sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-05-4244-01 10 101814119 101814119 G C CPN1 Missense_Mutation p.H366D 0.21 deleterious(0) probably_damaging(1) TCGA-05-4244-01 10 129902901 129902901 G A MKI67 Silent p.N2401N 0.04 TCGA-05-4244-01 10 21104601 21104606 TTACAC - NEBL In_Frame_Del p.S730_V731del 0.21 TCGA-05-4244-01 10 45652518 45652518 G A RP11-445N18.7 RNA 0.26 TCGA-05-4244-01 10 50667200 50667200 G A ERCC6 Silent p.S1381S 0.26 TCGA-05-4244-01 10 532472 532472 T A DIP2C Splice_Site p.X29_splice 0.21 TCGA-05-4244-01 10 93220277 93220277 C A HECTD2 Missense_Mutation p.P121Q 0.27 tolerated(0.24) benign(0.044) TCGA-05-4244-01 10 98188477 98188477 G T TLL2 Silent p.A183A 0.29 TCGA-05-4244-01 11 108199895 108199895 A C ATM Missense_Mutation p.K2413Q 0.11 deleterious(0.01) probably_damaging(0.97) TCGA-05-4244-01 11 113700072 113700072 G T USP28 Intron 0.24 TCGA-05-4244-01 11 123995132 123995132 C G VWA5A Intron 0.33 TCGA-05-4244-01 11 1977658 1977658 G C MRPL23 3'UTR 0.62 TCGA-05-4244-01 11 30926700 30926700 C T DCDC1 Silent p.S1372S 0.44 TCGA-05-4244-01 11 47463393 47463393 C A RAPSN Silent p.R257R 0.38 TCGA-05-4244-01 11 55419045 55419045 C A OR4S2 Silent p.S222S 0.69 TCGA-05-4244-01 11 55419046 55419046 C A OR4S2 Missense_Mutation p.L223M 0.68 deleterious(0) probably_damaging(0.992) TCGA-05-4244-01 11 57995561 57995561 C A OR10Q1 Missense_Mutation p.V263L 0.10 deleterious(0.02) probably_damaging(0.919) TCGA-05-4244-01 11 61124041 61124059 CTGGGTGCCAGTTGAACAT - CYB561A3 Frame_Shift_Del p.M60Cfs*40 0.45 TCGA-05-4244-01 11 617417 617417 C G CDHR5 Missense_Mutation p.E824D 0.46 tolerated(0.25) unknown(0) TCGA-05-4244-01 11 64037567 64037567 G C BAD 3'UTR 0.50 TCGA-05-4244-01 11 64821756 64821756 C T NAALADL1 Missense_Mutation p.G320S 0.10 deleterious(0) benign(0.276) TCGA-05-4244-01 11 65107996 65107996 A T DPF2 Missense_Mutation p.E58V 0.39 deleterious(0) possibly_damaging(0.525) TCGA-05-4244-01 11 92495049 92495049 C A FAT3 Missense_Mutation p.P1233T 0.11 possibly_damaging(0.456) TCGA-05-4244-01 12 109644622 109644622 G T ACACB Missense_Mutation p.M1007I 0.23 deleterious(0) possibly_damaging(0.588) TCGA-05-4244-01 12 110825555 110825555 G A ANAPC7 Silent p.I255I 0.19 TCGA-05-4244-01 12 113873352 113873352 A G SDSL Missense_Mutation p.D221G 0.19 tolerated(0.32) benign(0.001) TCGA-05-4244-01 12 114404165 114404165 C A RBM19 5'Flank 0.21 TCGA-05-4244-01 12 118577338 118577338 G T PEBP1 Missense_Mutation p.G110W 0.26 deleterious(0) probably_damaging(0.992) TCGA-05-4244-01 12 126004076 126004076 G T TMEM132B Missense_Mutation p.V395L 0.28 tolerated(0.12) benign(0.319) TCGA-05-4244-01 12 132490798 132490798 C T EP400 Missense_Mutation p.A1026V 0.10 unknown(0) TCGA-05-4244-01 12 133727658 133727658 G T CTD-2140B24.4 Missense_Mutation p.E26D 0.28 deleterious(0) benign(0.014) TCGA-05-4244-01 12 1943779 1943779 C T LRTM2 Silent p.Y335Y 0.34 TCGA-05-4244-01 12 21391919 21391919 C A SLCO1B1 Silent p.V624V 0.15 TCGA-05-4244-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.35 deleterious(0.04) probably_damaging(0.993) TCGA-05-4244-01 12 2800361 2800361 T C CACNA1C Missense_Mutation p.L2186P 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-05-4244-01 12 43860487 43860487 G A ADAMTS20 Silent p.N445N 0.35 TCGA-05-4244-01 12 53452954 53452954 G T TENC1 Missense_Mutation p.S520I 0.23 deleterious(0.04) probably_damaging(0.999) TCGA-05-4244-01 12 55025579 55025579 C A LACRT Missense_Mutation p.A100S 0.28 tolerated_low_confidence(0.46) possibly_damaging(0.567) TCGA-05-4244-01 12 75884265 75884265 A G GLIPR1 Missense_Mutation p.N167S 0.29 deleterious(0.01) benign(0.061) TCGA-05-4244-01 12 92818631 92818631 C A CLLU1 Silent p.R59R 0.25 TCGA-05-4244-01 13 101735223 101735223 C A NALCN Missense_Mutation p.E1234D 0.41 tolerated(0.57) benign(0.001) TCGA-05-4244-01 13 101735224 101735224 T A NALCN Missense_Mutation p.E1234V 0.40 tolerated(0.15) benign(0.024) TCGA-05-4244-01 13 25670895 25670895 G T PABPC3 Missense_Mutation p.A187S 0.35 tolerated(0.07) benign(0.044) TCGA-05-4244-01 14 102026666 102026666 C A DIO3 5'Flank 0.30 TCGA-05-4244-01 14 23019579 23019579 T A TRAC Missense_Mutation p.L133H 0.21 deleterious(0) probably_damaging(0.997) TCGA-05-4244-01 14 23885394 23885394 A T MYH7 Missense_Mutation p.L1591Q 0.20 tolerated(1) benign(0.038) TCGA-05-4244-01 14 47120353 47120353 C G RPL10L Missense_Mutation p.G196A 0.24 tolerated(0.23) benign(0.064) TCGA-05-4244-01 14 51475811 51475811 G T TRIM9 Missense_Mutation p.F431L 0.22 deleterious(0.04) possibly_damaging(0.831) TCGA-05-4244-01 14 59939767 59939767 T C L3HYPDH Silent p.V327V 0.30 TCGA-05-4244-01 14 60074059 60074059 G A RTN1 Silent p.R639R 0.22 TCGA-05-4244-01 14 63483638 63483638 C A KCNH5 Silent p.V36V 0.30 TCGA-05-4244-01 14 74416829 74416829 G T COQ6 5'Flank 0.35 TCGA-05-4244-01 14 95090004 95090004 C T SERPINA3 Silent p.A375A 0.25 TCGA-05-4244-01 15 22473191 22473191 C G IGHV4OR15-8 Missense_Mutation p.G27A 0.08 deleterious(0) possibly_damaging(0.779) TCGA-05-4244-01 15 25488821 25488821 C A SNORD115-40 RNA 0.30 TCGA-05-4244-01 15 31329913 31329913 C G TRPM1 Splice_Site p.X874_splice 0.28 TCGA-05-4244-01 15 34610759 34610759 C T SLC12A6 Intron 0.16 TCGA-05-4244-01 15 40915482 40915482 G T CASC5 Missense_Mutation p.R1033L 0.32 tolerated(0.12) benign(0.008) TCGA-05-4244-01 15 51017504 51017504 C A SPPL2A Missense_Mutation p.R388I 0.33 deleterious(0) benign(0.027) TCGA-05-4244-01 15 53992108 53992108 C A WDR72 Missense_Mutation p.G535V 0.12 deleterious(0) benign(0.183) TCGA-05-4244-01 15 62239393 62239393 A G VPS13C Silent p.H1625H 0.22 TCGA-05-4244-01 15 75641515 75641515 G T NEIL1 Missense_Mutation p.R90L 0.33 tolerated(0.28) benign(0.032) TCGA-05-4244-01 15 83215263 83215263 A T CPEB1 Silent p.I501I 0.41 TCGA-05-4244-01 15 89392926 89392926 G T ACAN Missense_Mutation p.D664Y 0.24 deleterious(0) unknown(0) TCGA-05-4244-01 16 18882139 18882139 C T SMG1 Missense_Mutation p.D792N 0.25 tolerated(0.51) benign(0.002) TCGA-05-4244-01 16 23669925 23669925 C T DCTN5 Missense_Mutation p.P72L 0.20 deleterious(0) possibly_damaging(0.703) TCGA-05-4244-01 16 23718140 23718140 C T ERN2 Missense_Mutation p.G189E 0.19 deleterious(0) probably_damaging(1) TCGA-05-4244-01 16 23718374 23718374 C T ERN2 Silent p.L159L 0.11 TCGA-05-4244-01 16 24788604 24788604 C G TNRC6A Missense_Mutation p.Q172E 0.17 tolerated(0.33) benign(0.054) TCGA-05-4244-01 16 32890601 32890601 C A SLC6A10P RNA 0.40 TCGA-05-4244-01 16 32890968 32890968 C T SLC6A10P RNA 0.24 TCGA-05-4244-01 16 3451893 3451893 C A ZNF174 5'UTR 0.17 TCGA-05-4244-01 16 4790184 4790184 G A C16orf71 Missense_Mutation p.E103K 0.03 deleterious(0.04) probably_damaging(0.981) TCGA-05-4244-01 16 49671383 49671383 C T ZNF423 Missense_Mutation p.M560I 0.21 tolerated(0.37) benign(0.017) TCGA-05-4244-01 16 55853504 55853504 C A CES1 Missense_Mutation p.M283I 0.14 tolerated(0.33) benign(0.019) TCGA-05-4244-01 16 8844285 8844285 G T ABAT Nonsense_Mutation p.E69* 0.13 TCGA-05-4244-01 16 8988972 8988972 C T USP7 Silent p.E985E 0.10 TCGA-05-4244-01 17 10451096 10451096 C A MYH2 Missense_Mutation p.V48F 0.43 deleterious(0) probably_damaging(0.948) TCGA-05-4244-01 17 10728733 10728733 T C PIRT Missense_Mutation p.Y77C 0.36 tolerated(0.23) probably_damaging(0.999) TCGA-05-4244-01 17 3119264 3119264 C T OR1A1 Missense_Mutation p.A117V 0.23 tolerated(1) benign(0.012) TCGA-05-4244-01 17 3324173 3324173 C T OR3A3 Silent p.D104D 0.39 TCGA-05-4244-01 17 36991511 36991511 G A C17orf98 Silent p.R132R 0.19 TCGA-05-4244-01 17 37618415 37618424 AACAGCAGAG - CDK12 Frame_Shift_Del p.N31Sfs*23 0.32 TCGA-05-4244-01 17 3819547 3819547 G A P2RX1 5'UTR 0.40 TCGA-05-4244-01 17 38644981 38644981 T A TNS4 Missense_Mutation p.N227I 0.43 tolerated(0.19) benign(0.035) TCGA-05-4244-01 17 42169750 42169750 C A HDAC5 Silent p.G307G 0.22 TCGA-05-4244-01 17 48823140 48823140 G T LUC7L3 Missense_Mutation p.K251N 0.50 deleterious(0.01) unknown(0) TCGA-05-4244-01 17 58506804 58506804 T C C17orf64 Missense_Mutation p.W171R 0.42 deleterious(0) probably_damaging(0.999) TCGA-05-4244-01 17 61619723 61619723 G T KCNH6 Missense_Mutation p.E692D 0.35 tolerated(0.18) benign(0.267) TCGA-05-4244-01 17 7093987 7093987 G T DLG4 3'UTR 0.07 TCGA-05-4244-01 17 7357633 7357633 T C CHRNB1 Missense_Mutation p.S280P 0.47 deleterious(0.01) probably_damaging(0.985) TCGA-05-4244-01 17 9791285 9791285 G T GLP2R Nonsense_Mutation p.G441* 0.42 TCGA-05-4244-01 18 13884609 13884609 C A MC2R 3'UTR 0.25 TCGA-05-4244-01 18 21660779 21660779 T A TTC39C Missense_Mutation p.S231T 0.24 deleterious(0) probably_damaging(1) TCGA-05-4244-01 18 50592527 50592527 C A DCC Missense_Mutation p.P418T 0.30 tolerated(0.64) benign(0.002) TCGA-05-4244-01 18 57363928 57363928 C T CCBE1 Missense_Mutation p.E49K 0.30 deleterious(0.03) probably_damaging(0.985) TCGA-05-4244-01 18 67801779 67801779 T A RTTN Splice_Site p.X962_splice 0.38 TCGA-05-4244-01 18 72999184 72999184 G T TSHZ1 Missense_Mutation p.G563C 0.25 deleterious(0) possibly_damaging(0.693) TCGA-05-4244-01 19 15061009 15061009 A T SLC1A6 Nonstop_Mutation p.*565Rext*? 0.24 TCGA-05-4244-01 19 15989716 15989716 C T CYP4F2 Silent p.A476A 0.28 TCGA-05-4244-01 19 1816518 1816518 C T REXO1 Missense_Mutation p.R1123H 0.16 deleterious(0) probably_damaging(0.993) TCGA-05-4244-01 19 18499574 18499574 C A GDF15 Missense_Mutation p.N252K 0.32 tolerated(0.06) possibly_damaging(0.716) TCGA-05-4244-01 19 19750925 19750925 G A GMIP Missense_Mutation p.T169I 0.30 deleterious(0.04) probably_damaging(0.928) TCGA-05-4244-01 19 21239980 21239980 A G ZNF430 Missense_Mutation p.Y289C 0.24 deleterious(0.02) possibly_damaging(0.758) TCGA-05-4244-01 19 22363671 22363671 C T ZNF676 Missense_Mutation p.C283Y 0.29 deleterious(0.05) benign(0.26) TCGA-05-4244-01 19 35631042 35631042 C T FXYD1 Missense_Mutation p.A20V 0.04 deleterious(0.02) benign(0.086) TCGA-05-4244-01 19 43258471 43258471 T G PSG8 Silent p.P419P 0.26 TCGA-05-4244-01 19 44222905 44222905 G A IRGC Silent p.A65A 0.47 TCGA-05-4244-01 19 48342701 48342701 G T CRX Missense_Mutation p.R126I 0.44 tolerated(0.16) benign(0.029) TCGA-05-4244-01 19 51483127 51483127 C A KLK7 Missense_Mutation p.D175Y 0.40 deleterious(0) possibly_damaging(0.821) TCGA-05-4244-01 19 53117543 53117543 T C ZNF83 Missense_Mutation p.H92R 0.61 deleterious(0.01) benign(0.3) TCGA-05-4244-01 19 5789413 5789413 G A DUS3L Silent p.F235F 0.27 TCGA-05-4244-01 19 9068625 9068625 C A MUC16 Missense_Mutation p.R6274L 0.31 unknown(0) TCGA-05-4244-01 1 111441857 111441857 C G CD53 3'UTR 0.14 TCGA-05-4244-01 1 120263891 120263891 T A PHGDH Silent p.G79G 0.11 TCGA-05-4244-01 1 145811985 145811985 C A GPR89A Missense_Mutation p.W75L 0.08 deleterious(0) probably_damaging(0.991) TCGA-05-4244-01 1 152058170 152058170 T C TCHHL1 Missense_Mutation p.E663G 0.07 deleterious(0.01) benign(0.322) TCGA-05-4244-01 1 154956053 154956053 C T FLAD1 5'UTR 0.49 TCGA-05-4244-01 1 158390272 158390272 G T OR10K2 Missense_Mutation p.P129T 0.09 deleterious(0) probably_damaging(0.999) TCGA-05-4244-01 1 158624529 158624529 C G SPTA1 Missense_Mutation p.A970P 0.12 tolerated(0.13) benign(0.059) TCGA-05-4244-01 1 174671252 174671252 A T RABGAP1L Missense_Mutation p.E676V 0.10 deleterious(0.02) possibly_damaging(0.783) TCGA-05-4244-01 1 17990971 17990971 C G ARHGEF10L Missense_Mutation p.P964A 0.08 tolerated(0.42) benign(0.235) TCGA-05-4244-01 1 190203536 190203536 C A BRINP3 Silent p.L230L 0.42 TCGA-05-4244-01 1 20005133 20005133 C G HTR6 Missense_Mutation p.A263G 0.20 deleterious(0.03) possibly_damaging(0.549) TCGA-05-4244-01 1 201028377 201028377 C A CACNA1S Silent p.V1155V 0.48 TCGA-05-4244-01 1 220267786 220267786 G - IARS2 Frame_Shift_Del p.G77Afs*29 0.35 TCGA-05-4244-01 1 226108231 226108231 G A PYCR2 Missense_Mutation p.T296I 0.08 tolerated_low_confidence(0.15) benign(0.04) TCGA-05-4244-01 1 228004983 228004983 T A PRSS38 Missense_Mutation p.W129R 0.63 tolerated(0.7) possibly_damaging(0.705) TCGA-05-4244-01 1 240070932 240070932 G T CHRM3 Nonsense_Mutation p.G61* 0.07 TCGA-05-4244-01 1 248202145 248202145 G T OR2L2 Missense_Mutation p.W192C 0.18 tolerated(0.18) probably_damaging(0.928) TCGA-05-4244-01 1 248512355 248512355 G C OR14C36 Silent p.A93A 0.27 TCGA-05-4244-01 1 27240194 27240194 G A NR0B2 Missense_Mutation p.P80S 0.29 deleterious(0) possibly_damaging(0.73) TCGA-05-4244-01 1 27874554 27874554 G A AHDC1 Missense_Mutation p.T1358I 0.27 deleterious(0.01) possibly_damaging(0.702) TCGA-05-4244-01 1 43888542 43888542 G T SZT2 Silent p.P675P 0.33 TCGA-05-4244-01 1 52878240 52878240 G T PRPF38A Nonsense_Mutation p.E185* 0.10 TCGA-05-4244-01 1 55279583 55279583 C G C1orf177 Missense_Mutation p.R287G 0.21 deleterious(0) probably_damaging(0.97) TCGA-05-4244-01 1 62941022 62941022 T A DOCK7 Missense_Mutation p.I1957F 0.23 tolerated(0.55) benign(0.005) TCGA-05-4244-01 1 63048887 63048887 C A DOCK7 Missense_Mutation p.K613N 0.11 tolerated(0.22) benign(0.008) TCGA-05-4244-01 1 70904862 70904862 G T CTH 3'UTR 0.28 TCGA-05-4244-01 1 89662952 89662953 - G GBP4 Frame_Shift_Ins p.I26Hfs*22 0.23 TCGA-05-4244-01 20 25187965 25187965 G T ENTPD6 Missense_Mutation p.G103V 0.18 deleterious(0) probably_damaging(0.998) TCGA-05-4244-01 20 2776024 2776024 C A CPXM1 Nonsense_Mutation p.E587* 0.20 TCGA-05-4244-01 20 3127954 3127954 G A FASTKD5 Missense_Mutation p.S588F 0.14 deleterious(0.02) probably_damaging(0.98) TCGA-05-4244-01 20 34572656 34572656 C A CNBD2 Missense_Mutation p.D224E 0.44 deleterious(0.02) benign(0.132) TCGA-05-4244-01 20 41101011 41101011 G T PTPRT Missense_Mutation p.L449M 0.22 deleterious(0) probably_damaging(0.996) TCGA-05-4244-01 20 41514452 41514452 G T PTPRT Missense_Mutation p.P70H 0.16 deleterious(0) probably_damaging(0.999) TCGA-05-4244-01 21 17443512 17443512 G - LINC00478 RNA 0.24 TCGA-05-4244-01 21 32119384 32119384 C A KRTAP21-2 Missense_Mutation p.G46V 0.23 tolerated_low_confidence(0.05) unknown(0) TCGA-05-4244-01 21 45826567 45826567 C A TRPM2 Missense_Mutation p.R961S 0.23 tolerated(0.98) benign(0.003) TCGA-05-4244-01 22 30144421 30144421 T C ZMAT5 Missense_Mutation p.Y38C 0.33 deleterious(0) probably_damaging(0.995) TCGA-05-4244-01 22 36123064 36123064 C T APOL5 Silent p.L317L 0.28 TCGA-05-4244-01 22 50280790 50280790 G A ZBED4 Silent p.L1160L 0.49 TCGA-05-4244-01 2 114709124 114709124 T A ACTR3 Silent p.I309I 0.11 TCGA-05-4244-01 2 120383238 120383238 G A PCDP1 Missense_Mutation p.G497D 0.23 tolerated(0.61) benign(0.002) TCGA-05-4244-01 2 125530480 125530480 G C CNTNAP5 Missense_Mutation p.A879P 0.23 deleterious(0) probably_damaging(0.988) TCGA-05-4244-01 2 131521154 131521154 C A AMER3 Silent p.A503A 0.20 TCGA-05-4244-01 2 143676236 143676236 T G KYNU Silent p.L76L 0.30 TCGA-05-4244-01 2 152426724 152426724 G T NEB Silent p.I5767I 0.18 TCGA-05-4244-01 2 153519649 153519649 T A PRPF40A Missense_Mutation p.E709V 0.26 tolerated(0.55) benign(0.403) TCGA-05-4244-01 2 163241275 163241275 G T KCNH7 Missense_Mutation p.A962E 0.23 tolerated(0.92) benign(0.017) TCGA-05-4244-01 2 166532856 166532856 C A CSRNP3 Missense_Mutation p.A148D 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-05-4244-01 2 167133845 167133845 C G SCN9A Missense_Mutation p.R830P 0.23 deleterious(0) probably_damaging(0.911) TCGA-05-4244-01 2 189871100 189871100 T A COL3A1 Silent p.G1041G 0.27 TCGA-05-4244-01 2 196671525 196671525 C A DNAH7 Missense_Mutation p.W3372L 0.30 tolerated(0.07) benign(0.168) TCGA-05-4244-01 2 219603497 219603497 C T TTLL4 Silent p.P366P 0.21 TCGA-05-4244-01 2 27375674 27375674 C A TCF23 Missense_Mutation p.P195H 0.37 deleterious(0.01) benign(0.051) TCGA-05-4244-01 2 48950635 48950635 C T LHCGR Missense_Mutation p.G166R 0.35 tolerated(0.52) benign(0.02) TCGA-05-4244-01 2 66798643 66798643 G T MEIS1 3'UTR 0.55 TCGA-05-4244-01 2 90139390 90139390 G C IGKV1D-16 Missense_Mutation p.W54S 0.23 tolerated(0.26) benign(0.001) TCGA-05-4244-01 3 118865094 118865094 G T C3orf30 Missense_Mutation p.A20S 0.31 tolerated(0.37) probably_damaging(0.984) TCGA-05-4244-01 3 119886829 119886829 G T GPR156 Missense_Mutation p.P499T 0.27 tolerated(0.72) benign(0.004) TCGA-05-4244-01 3 138738935 138738935 C T PRR23B Missense_Mutation p.R190Q 0.22 tolerated(0.34) benign(0.002) TCGA-05-4244-01 3 147114235 147114235 C T ZIC4 Missense_Mutation p.G81D 0.16 tolerated(0.09) probably_damaging(0.994) TCGA-05-4244-01 3 165547581 165547581 C G BCHE Missense_Mutation p.R414P 0.21 deleterious(0.02) probably_damaging(1) TCGA-05-4244-01 3 190347361 190347361 T C IL1RAP Intron 0.21 TCGA-05-4244-01 3 195798322 195798322 T G TFRC Missense_Mutation p.Y211S 0.27 tolerated(0.43) benign(0.001) TCGA-05-4244-01 3 20164279 20164279 G A KAT2B Missense_Mutation p.A466T 0.22 tolerated(0.27) benign(0.022) TCGA-05-4244-01 3 23960893 23960893 T A RPL15 Silent p.R172R 0.14 TCGA-05-4244-01 3 27759217 27759217 G A EOMES Missense_Mutation p.R469W 0.14 deleterious(0) probably_damaging(0.999) TCGA-05-4244-01 3 32031881 32031881 G A ZNF860 Missense_Mutation p.R437H 0.33 tolerated(0.46) benign(0) TCGA-05-4244-01 3 32933097 32933097 G T TRIM71 Missense_Mutation p.A801S 0.16 tolerated(0.06) possibly_damaging(0.714) TCGA-05-4244-01 3 52858333 52858333 T G ITIH4 Splice_Site p.X349_splice 0.16 TCGA-05-4244-01 3 58196650 58196650 C T DNASE1L3 5'UTR 0.36 TCGA-05-4244-01 3 77651390 77651390 G T ROBO2 Missense_Mutation p.D978Y 0.27 deleterious(0) possibly_damaging(0.861) TCGA-05-4244-01 4 114275531 114275531 C A ANK2 Silent p.S1919S 0.34 TCGA-05-4244-01 4 119217009 119217009 A G PRSS12 Missense_Mutation p.S614P 0.15 tolerated(0.31) benign(0.003) TCGA-05-4244-01 4 122789195 122789195 C A BBS7 Missense_Mutation p.V15L 0.39 tolerated(0.28) benign(0.005) TCGA-05-4244-01 4 122846200 122846200 T A TRPC3 Missense_Mutation p.K383N 0.29 deleterious(0.04) benign(0.172) TCGA-05-4244-01 4 13544075 13544075 C G NKX3-2 Missense_Mutation p.G182R 0.33 tolerated(0.48) benign(0.302) TCGA-05-4244-01 4 152624922 152624922 C A PET112 Intron 0.40 TCGA-05-4244-01 4 4204233 4204233 G T OTOP1 Missense_Mutation p.H224Q 0.21 deleterious(0) probably_damaging(0.983) TCGA-05-4244-01 4 57181002 57181002 C G KIAA1211 Missense_Mutation p.S445C 0.34 deleterious(0.02) unknown(0) TCGA-05-4244-01 4 62598758 62598758 C G LPHN3 Missense_Mutation p.N227K 0.27 deleterious(0.05) probably_damaging(0.999) TCGA-05-4244-01 4 70361226 70361226 T A UGT2B4 Silent p.T118T 0.21 TCGA-05-4244-01 4 73164047 73164047 G T ADAMTS3 Missense_Mutation p.T846N 0.31 deleterious(0.04) benign(0.23) TCGA-05-4244-01 4 8407759 8407759 C A ACOX3 Silent p.P233P 0.25 TCGA-05-4244-01 5 131647850 131647850 G A SLC22A4 Intron 0.34 TCGA-05-4244-01 5 140554050 140554050 C T PCDHB7 Missense_Mutation p.A545V 0.26 tolerated_low_confidence(0.06) benign(0.217) TCGA-05-4244-01 5 140579492 140579492 G T PCDHB11 Missense_Mutation p.A49S 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.531) TCGA-05-4244-01 5 140744543 140744543 G T PCDHGA5 Missense_Mutation p.D216Y 0.23 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-05-4244-01 5 148989214 148989214 G T ARHGEF37 Missense_Mutation p.E138D 0.38 tolerated(0.99) benign(0.009) TCGA-05-4244-01 5 150483150 150483150 G A ANXA6 Missense_Mutation p.S648F 0.16 deleterious(0) probably_damaging(1) TCGA-05-4244-01 5 172659670 172659670 C T NKX2-5 Missense_Mutation p.V293M 0.40 tolerated(1) possibly_damaging(0.868) TCGA-05-4244-01 5 174870043 174870043 G T DRD1 Missense_Mutation p.F20L 0.34 tolerated(0.92) benign(0) TCGA-05-4244-01 5 174936182 174936182 A T SFXN1 Silent p.T104T 0.22 TCGA-05-4244-01 5 176517431 176517431 G T FGFR4 Missense_Mutation p.E44D 0.43 tolerated(0.37) benign(0.055) TCGA-05-4244-01 5 178410147 178410147 C G GRM6 Missense_Mutation p.D734H 0.20 tolerated(0.22) benign(0.081) TCGA-05-4244-01 5 23527673 23527673 C A PRDM9 Missense_Mutation p.H826N 0.28 deleterious(0.02) probably_damaging(0.997) TCGA-05-4244-01 5 32229773 32229773 C A MTMR12 3'UTR 0.17 TCGA-05-4244-01 5 41160437 41160437 G T C6 Silent p.I497I 0.30 TCGA-05-4244-01 5 71501080 71501080 C A MAP1B 3'UTR 0.49 TCGA-05-4244-01 5 78426859 78426859 G T BHMT Nonsense_Mutation p.E381* 0.34 TCGA-05-4244-01 5 80021292 80021292 G T MSH3 Missense_Mutation p.R454L 0.18 deleterious(0) probably_damaging(0.987) TCGA-05-4244-01 5 89802489 89802489 G C POLR3G Missense_Mutation p.E195Q 0.15 tolerated(0.1) unknown(0) TCGA-05-4244-01 6 102124642 102124642 A T GRIK2 Missense_Mutation p.D229V 0.17 deleterious(0.01) probably_damaging(1) TCGA-05-4244-01 6 112452206 112452206 A T LAMA4 Missense_Mutation p.L1311Q 0.21 tolerated(0.41) benign(0.032) TCGA-05-4244-01 6 161152090 161152090 A T PLG Missense_Mutation p.T422S 0.28 tolerated(0.23) benign(0.026) TCGA-05-4244-01 6 166779514 166779514 C A MPC1 Missense_Mutation p.A85S 0.15 tolerated(0.46) benign(0.1) TCGA-05-4244-01 6 29054376 29054376 G T OR2B3 Missense_Mutation p.S217Y 0.27 deleterious(0) probably_damaging(1) TCGA-05-4244-01 6 31112700 31112700 C A CCHCR1 Missense_Mutation p.R676L 0.28 deleterious(0) probably_damaging(0.915) TCGA-05-4244-01 6 35445092 35445092 G T TEAD3 Silent p.L196L 0.14 TCGA-05-4244-01 6 52054119 52054119 G A IL17A 3'UTR 0.23 TCGA-05-4244-01 6 56358869 56358869 T A DST Missense_Mutation p.Q4155L 0.27 benign(0.279) TCGA-05-4244-01 6 6224937 6224937 C A F13A1 Missense_Mutation p.A319S 0.18 tolerated(0.2) probably_damaging(0.999) TCGA-05-4244-01 6 87795510 87795510 C T CGA Silent p.A105A 0.12 TCGA-05-4244-01 6 90039406 90039406 C A UBE2J1 Nonsense_Mutation p.E317* 0.31 TCGA-05-4244-01 7 117359591 117359591 C A CTTNBP2 Missense_Mutation p.M1537I 0.26 tolerated(0.11) benign(0.02) TCGA-05-4244-01 7 123599549 123599549 G T SPAM1 Missense_Mutation p.L352F 0.24 tolerated(0.15) benign(0.063) TCGA-05-4244-01 7 142119819 142119819 G T TRBV7-7 3'Flank 0.16 TCGA-05-4244-01 7 143053877 143053878 - C FAM131B Frame_Shift_Ins p.D284Rfs*3 0.26 TCGA-05-4244-01 7 143417066 143417066 C A FAM115C Missense_Mutation p.T305K 0.18 tolerated(0.78) benign(0.009) TCGA-05-4244-01 7 143748183 143748183 C A OR2A5 Missense_Mutation p.S230Y 0.28 deleterious(0) probably_damaging(0.995) TCGA-05-4244-01 7 143826247 143826247 G A OR2A14 Silent p.P14P 0.28 TCGA-05-4244-01 7 149519646 149519646 G C SSPO RNA 0.18 TCGA-05-4244-01 7 150171185 150171185 C T GIMAP8 Silent p.R256R 0.22 TCGA-05-4244-01 7 15651974 15651974 A T MEOX2 3'UTR 0.48 TCGA-05-4244-01 7 2748319 2748319 C A AMZ1 Missense_Mutation p.S190R 0.50 deleterious(0.02) benign(0.02) TCGA-05-4244-01 7 48443360 48443360 C T ABCA13 Missense_Mutation p.S3985F 0.44 probably_damaging(0.995) TCGA-05-4244-01 7 6803635 6803635 T C RSPH10B2 Missense_Mutation p.V159A 0.26 deleterious(0) probably_damaging(0.996) TCGA-05-4244-01 7 99696705 99696706 - T MCM7 Frame_Shift_Ins p.P175Tfs*11 0.29 TCGA-05-4244-01 8 124664403 124664403 G A KLHL38 Missense_Mutation p.A255V 0.16 tolerated(0.63) benign(0.12) TCGA-05-4244-01 8 2820770 2820770 C A CSMD1 Missense_Mutation p.W3143L 0.14 probably_damaging(0.999) TCGA-05-4244-01 8 30999265 30999265 G T WRN Missense_Mutation p.L1069F 0.20 deleterious(0.01) benign(0.273) TCGA-05-4244-01 8 41563717 41563717 C T ANK1 Missense_Mutation p.V714I 0.19 deleterious(0.05) benign(0.003) TCGA-05-4244-01 8 55541741 55541741 G T RP1 Missense_Mutation p.A1767S 0.26 tolerated(0.27) benign(0.367) TCGA-05-4244-01 8 55542007 55542007 G T RP1 Missense_Mutation p.K1855N 0.13 deleterious(0.02) possibly_damaging(0.599) TCGA-05-4244-01 8 68956798 68956798 G A PREX2 Missense_Mutation p.E306K 0.19 deleterious(0) probably_damaging(0.986) TCGA-05-4244-01 8 77763196 77763196 G T ZFHX4 Nonsense_Mutation p.E1347* 0.25 TCGA-05-4244-01 8 92033633 92033633 C G TMEM55A Splice_Site p.X36_splice 0.21 TCGA-05-4244-01 8 99440446 99440446 A G KCNS2 Missense_Mutation p.Y80C 0.47 tolerated(0.21) probably_damaging(0.998) TCGA-05-4244-01 9 107457252 107457252 G A OR13D1 Missense_Mutation p.G184S 0.14 deleterious(0.01) probably_damaging(1) TCGA-05-4244-01 9 112141905 112141905 G C PTPN3 Nonsense_Mutation p.Y891* 0.30 TCGA-05-4244-01 9 114176921 114176921 T A KIAA0368 Missense_Mutation p.Y770F 0.15 deleterious(0) probably_damaging(1) TCGA-05-4244-01 9 125563312 125563312 C T OR1K1 Missense_Mutation p.A304V 0.18 deleterious(0.01) benign(0.023) TCGA-05-4244-01 9 125613500 125613500 C A RC3H2 Missense_Mutation p.L1080F 0.21 deleterious_low_confidence(0.04) probably_damaging(0.916) TCGA-05-4244-01 9 37692711 37692711 C G FRMPD1 Missense_Mutation p.L25V 0.27 deleterious(0) probably_damaging(0.974) TCGA-05-4244-01 9 79910762 79910762 G T VPS13A Missense_Mutation p.R1271I 0.20 deleterious(0) probably_damaging(0.999) TCGA-05-4244-01 9 8518211 8518211 C T PTPRD Missense_Mutation p.V394I 0.04 tolerated(0.4) probably_damaging(0.989) TCGA-05-4244-01 9 95015732 95015732 T A IARS Missense_Mutation p.Y714F 0.06 deleterious(0.02) probably_damaging(0.936) TCGA-05-4244-01 X 129148736 129148736 C G BCORL1 Missense_Mutation p.S663C 0.28 probably_damaging(0.99) TCGA-05-4244-01 X 135432428 135432428 T C GPR112 Missense_Mutation p.V2188A 0.37 tolerated(1) benign(0.001) TCGA-05-4244-01 X 24844572 24844572 G A POLA1 Missense_Mutation p.R1191K 0.54 deleterious(0) probably_damaging(0.98) TCGA-05-4244-01 X 26211902 26211902 G T MAGEB6 Splice_Site 0.44 TCGA-05-4244-01 X 26211903 26211903 G T MAGEB6 Intron 0.44 TCGA-05-4244-01 X 47444781 47444781 C T TIMP1 Intron 0.28 TCGA-05-4244-01 X 53230770 53230770 G A KDM5C Nonsense_Mutation p.Q675* 0.47 TCGA-05-4244-01 X 84510681 84510681 A T ZNF711 Missense_Mutation p.N166Y 0.72 deleterious(0) possibly_damaging(0.845) TCGA-05-4244-01 X 85233802 85233802 T C CHM Missense_Mutation p.I95V 0.32 tolerated(0.11) probably_damaging(0.988) TCGA-05-4244-01 X 91134263 91134263 C G PCDH11X Missense_Mutation p.H1008Q 0.28 deleterious(0.04) possibly_damaging(0.517) TCGA-05-4249-01 10 101606844 101606844 G T ABCC2 Missense_Mutation p.G1425W 0.34 deleterious(0) probably_damaging(0.999) TCGA-05-4249-01 10 105330758 105330758 C T NEURL1 Missense_Mutation p.S72F 0.30 deleterious(0.01) probably_damaging(0.981) TCGA-05-4249-01 10 1151165 1151165 A C WDR37 Missense_Mutation p.D354A 0.19 tolerated(0.13) benign(0.043) TCGA-05-4249-01 10 13251196 13251196 A T MCM10 Intron 0.30 TCGA-05-4249-01 10 23270392 23270392 C A ARMC3 Nonsense_Mutation p.S347* 0.30 TCGA-05-4249-01 10 5955787 5955787 C T FBXO18 Missense_Mutation p.P481L 0.34 tolerated(0.14) benign(0.03) TCGA-05-4249-01 10 64239687 64239687 A C ZNF365 Intron 0.24 TCGA-05-4249-01 10 70048359 70048375 CCTGTGTTTTCAACTTG - PBLD Frame_Shift_Del p.Q186Efs*10 0.16 TCGA-05-4249-01 10 73579275 73579275 G T PSAP Missense_Mutation p.L433M 0.27 deleterious(0.05) probably_damaging(0.971) TCGA-05-4249-01 10 75258547 75258547 C T USP54 Missense_Mutation p.R1632Q 0.11 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-05-4249-01 10 7759743 7759743 C T ITIH2 Missense_Mutation p.H208Y 0.26 deleterious(0) possibly_damaging(0.806) TCGA-05-4249-01 10 91067141 91067141 G C IFIT2 3'UTR 0.33 TCGA-05-4249-01 10 95791385 95791385 C T PLCE1 Silent p.D194D 0.20 TCGA-05-4249-01 10 98273371 98273371 C A TLL2 Silent p.G24G 0.37 TCGA-05-4249-01 11 117395563 117395563 G A DSCAML1 Silent p.N358N 0.16 TCGA-05-4249-01 11 121403215 121403215 G A SORL1 Missense_Mutation p.G547R 0.05 deleterious(0) probably_damaging(1) TCGA-05-4249-01 11 12901386 12901386 G A TEAD1 Silent p.P154P 0.11 TCGA-05-4249-01 11 16838843 16838843 C A PLEKHA7 Missense_Mutation p.R457L 0.21 deleterious(0.02) benign(0.012) TCGA-05-4249-01 11 17449426 17449426 G A ABCC8 Missense_Mutation p.R702C 0.19 tolerated(0.09) benign(0.003) TCGA-05-4249-01 11 20982079 20982079 G A NELL1 Missense_Mutation p.V425I 0.26 tolerated(0.29) benign(0.001) TCGA-05-4249-01 11 27016285 27016285 A T FIBIN Missense_Mutation p.Q71L 0.33 deleterious_low_confidence(0.02) benign(0.025) TCGA-05-4249-01 11 4661752 4661752 G T OR51D1 Silent p.R244R 0.29 TCGA-05-4249-01 11 59190046 59190046 G C OR5A2 Missense_Mutation p.I127M 0.07 deleterious(0) benign(0.399) TCGA-05-4249-01 11 60064740 60064740 C T MS4A4A Missense_Mutation p.T91I 0.23 tolerated(0.41) benign(0.002) TCGA-05-4249-01 11 62346199 62346199 C T TUT1 Missense_Mutation p.E370K 0.15 tolerated(0.22) benign(0) TCGA-05-4249-01 11 62656234 62656234 C G SLC3A2 3'UTR 0.29 TCGA-05-4249-01 11 64331815 64331815 A T SLC22A11 Missense_Mutation p.K286M 0.25 tolerated(0.35) benign(0.017) TCGA-05-4249-01 11 65349621 65349621 G A EHBP1L1 Missense_Mutation p.G493D 0.26 tolerated(0.15) benign(0.007) TCGA-05-4249-01 11 6806427 6806427 C A OR2AG1 Silent p.A53A 0.32 TCGA-05-4249-01 11 6806428 6806428 C A OR2AG1 Silent p.R54R 0.32 TCGA-05-4249-01 11 69063518 69063518 G T MYEOV Missense_Mutation p.V201L 0.31 deleterious_low_confidence(0) possibly_damaging(0.621) TCGA-05-4249-01 11 76063505 76063505 C A PRKRIR Missense_Mutation p.C230F 0.26 tolerated(0.13) benign(0.038) TCGA-05-4249-01 11 92087733 92087733 A G FAT3 Missense_Mutation p.I819V 0.36 benign(0.008) TCGA-05-4249-01 12 101005791 101005791 G C GAS2L3 Missense_Mutation p.R106T 0.20 deleterious(0.01) benign(0.062) TCGA-05-4249-01 12 109841826 109841826 G T MYO1H Missense_Mutation p.D248Y 0.21 deleterious(0) probably_damaging(0.931) TCGA-05-4249-01 12 111356969 111356969 C A MYL2 Missense_Mutation p.G11V 0.19 tolerated(0.08) unknown(0) TCGA-05-4249-01 12 113303262 113303262 G - RPH3A Frame_Shift_Del p.G92Efs*4 0.32 TCGA-05-4249-01 12 116401214 116401214 T A MED13L Missense_Mutation p.L2166F 0.30 deleterious(0) probably_damaging(0.998) TCGA-05-4249-01 12 117696828 117696828 C T NOS1 Intron 0.27 TCGA-05-4249-01 12 122079563 122079563 G T ORAI1 3'UTR 0.23 TCGA-05-4249-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.33 deleterious(0.04) probably_damaging(0.993) TCGA-05-4249-01 12 30783692 30783692 G T IPO8 3'UTR 0.50 TCGA-05-4249-01 12 31249591 31249591 G T DDX11 Silent p.R514R 0.22 TCGA-05-4249-01 12 31249592 31249592 T A DDX11 Missense_Mutation p.Y515N 0.23 deleterious(0) possibly_damaging(0.704) TCGA-05-4249-01 12 46245320 46245320 G T ARID2 Silent p.G1138G 0.27 TCGA-05-4249-01 12 49422684 49422684 G A KMT2D Missense_Mutation p.P4770L 0.26 unknown(0) TCGA-05-4249-01 12 51065097 51065097 T G DIP2B Missense_Mutation p.S186A 0.28 tolerated(0.07) benign(0.311) TCGA-05-4249-01 12 69983267 69983267 C T CCT2 Missense_Mutation p.S150F 0.10 tolerated(0.11) benign(0.025) TCGA-05-4249-01 12 71978333 71978333 G T LGR5 Missense_Mutation p.S848I 0.23 deleterious(0.04) possibly_damaging(0.714) TCGA-05-4249-01 12 75442064 75442064 G A KCNC2 Missense_Mutation p.P550L 0.16 tolerated_low_confidence(0.12) benign(0) TCGA-05-4249-01 12 81101854 81101854 G A MYF6 Missense_Mutation p.R119Q 0.27 tolerated(0.19) probably_damaging(0.994) TCGA-05-4249-01 12 85460635 85460635 T A LRRIQ1 Missense_Mutation p.I885N 0.22 deleterious(0) probably_damaging(0.976) TCGA-05-4249-01 12 88374099 88374099 C A C12orf50 3'UTR 0.16 TCGA-05-4249-01 12 96374622 96374622 C A HAL Missense_Mutation p.G436V 0.24 deleterious(0.05) benign(0.062) TCGA-05-4249-01 13 101755543 101755543 C A NALCN Missense_Mutation p.G1013C 0.25 deleterious(0) probably_damaging(1) TCGA-05-4249-01 13 26148945 26148945 G C ATP8A2 Splice_Site p.X555_splice 0.34 TCGA-05-4249-01 13 38172804 38172804 G A POSTN Silent p.N20N 0.11 TCGA-05-4249-01 13 43181007 43181007 C T TNFSF11 Nonsense_Mutation p.Q303* 0.33 TCGA-05-4249-01 13 60582753 60582753 T A DIAPH3 Silent p.S313S 0.11 TCGA-05-4249-01 13 70413137 70413137 T C KLHL1 Missense_Mutation p.Y462C 0.33 deleterious(0) probably_damaging(0.994) TCGA-05-4249-01 13 84454289 84454289 G A SLITRK1 Silent p.L452L 0.27 TCGA-05-4249-01 13 88330366 88330366 A G SLITRK5 Missense_Mutation p.D908G 0.13 deleterious(0.03) benign(0.035) TCGA-05-4249-01 13 94482405 94482405 A T GPC6 Splice_Site p.X107_splice 0.35 TCGA-05-4249-01 14 21052268 21052268 G T RNASE11 Silent p.R122R 0.26 TCGA-05-4249-01 14 21558621 21558621 T C ZNF219 3'UTR 0.35 TCGA-05-4249-01 14 22409639 22409639 G C TRAV9-2 Silent p.T43T 0.23 TCGA-05-4249-01 14 23847613 23847613 C A CMTM5 Missense_Mutation p.A61D 0.36 deleterious(0.03) probably_damaging(0.992) TCGA-05-4249-01 14 24610337 24610337 C G EMC9 Missense_Mutation p.M59I 0.25 tolerated(0.15) possibly_damaging(0.542) TCGA-05-4249-01 14 24676508 24676508 T A TSSK4 Nonsense_Mutation p.C209* 0.31 TCGA-05-4249-01 14 31374709 31374709 T A STRN3 Silent p.V648V 0.17 TCGA-05-4249-01 14 45374763 45374763 G C C14orf28 3'UTR 0.25 TCGA-05-4249-01 14 47504503 47504503 T A MDGA2 Silent p.P510P 0.36 TCGA-05-4249-01 14 51131974 51131974 T C SAV1 Missense_Mutation p.H153R 0.26 tolerated(0.27) benign(0.039) TCGA-05-4249-01 14 65216089 65216089 G T SPTB Missense_Mutation p.P2308T 0.40 tolerated(0.57) benign(0.002) TCGA-05-4249-01 14 69256990 69256990 C A ZFP36L1 Nonsense_Mutation p.E93* 0.24 TCGA-05-4249-01 14 71514586 71514586 C G PCNX Missense_Mutation p.P1408R 0.25 deleterious(0) probably_damaging(0.987) TCGA-05-4249-01 14 74042272 74042272 C T ACOT2 3'UTR 0.31 TCGA-05-4249-01 14 75573382 75573382 C A NEK9 Nonsense_Mutation p.G451* 0.26 TCGA-05-4249-01 14 91779574 91779574 C G CCDC88C Silent p.L862L 0.16 TCGA-05-4249-01 14 94088409 94088409 A G UNC79 Silent p.L1433L 0.34 TCGA-05-4249-01 15 101170138 101170138 C T ASB7 Silent p.Y236Y 0.18 TCGA-05-4249-01 15 102358761 102358761 G A OR4F15 Missense_Mutation p.M124I 0.13 tolerated_low_confidence(0.16) benign(0.001) TCGA-05-4249-01 15 23811308 23811308 G T MKRN3 Missense_Mutation p.A127S 0.33 tolerated(0.09) benign(0.14) TCGA-05-4249-01 15 28414753 28414753 C A HERC2 Missense_Mutation p.G3369V 0.19 possibly_damaging(0.532) TCGA-05-4249-01 15 28414754 28414754 C A HERC2 Missense_Mutation p.G3369C 0.19 possibly_damaging(0.887) TCGA-05-4249-01 15 30010701 30010701 C A TJP1 Missense_Mutation p.E1215D 0.15 tolerated_low_confidence(0.28) benign(0.001) TCGA-05-4249-01 15 49030868 49030868 A G CEP152 Missense_Mutation p.C1571R 0.20 deleterious(0.04) benign(0.066) TCGA-05-4249-01 15 49431825 49431825 C G COPS2 Missense_Mutation p.R91T 0.15 tolerated(0.64) benign(0.007) TCGA-05-4249-01 15 59191867 59191867 C A SLTM Missense_Mutation p.A287S 0.10 tolerated(0.26) unknown(0) TCGA-05-4249-01 15 78211461 78211461 C A RP11-114H24.7 Intron 0.24 TCGA-05-4249-01 15 99673193 99673193 C T SYNM Missense_Mutation p.S1542L 0.12 deleterious(0) probably_damaging(0.982) TCGA-05-4249-01 16 1250434 1250434 G A CACNA1H Missense_Mutation p.E328K 0.33 tolerated(0.65) possibly_damaging(0.542) TCGA-05-4249-01 16 15820896 15820896 C T MYH11 Missense_Mutation p.D1230N 0.12 possibly_damaging(0.612) TCGA-05-4249-01 16 20084939 20084939 G T GPR139 5'UTR 0.48 TCGA-05-4249-01 16 31092791 31092791 C T ZNF646 Silent p.L1716L 0.12 TCGA-05-4249-01 16 31092914 31092914 C T ZNF646 Missense_Mutation p.R1757W 0.12 deleterious(0.03) possibly_damaging(0.656) TCGA-05-4249-01 16 31154786 31154786 C A PRSS36 Missense_Mutation p.G326V 0.32 deleterious(0) probably_damaging(0.995) TCGA-05-4249-01 16 31476156 31476156 T C ARMC5 Silent p.D604D 0.44 TCGA-05-4249-01 16 55806304 55806304 G A CES1P1 RNA 0.58 TCGA-05-4249-01 16 70712199 70712199 G A MTSS1L Missense_Mutation p.R194W 0.09 deleterious(0) probably_damaging(1) TCGA-05-4249-01 16 71512893 71512893 C G ZNF19 Missense_Mutation p.E17Q 0.12 tolerated(0.18) possibly_damaging(0.716) TCGA-05-4249-01 16 81320986 81320986 G A BCMO1 Silent p.A463A 0.36 TCGA-05-4249-01 16 81388292 81388292 G T GAN Missense_Mutation p.V189F 0.55 deleterious(0) probably_damaging(0.955) TCGA-05-4249-01 16 90160967 90160967 T A TUBB8P7 Intron 0.14 TCGA-05-4249-01 17 10403991 10403991 G A MYH1 Silent p.L1273L 0.30 TCGA-05-4249-01 17 10608454 10608454 C T ADPRM Nonsense_Mutation p.Q71* 0.37 TCGA-05-4249-01 17 15620368 15620368 G T ZNF286A Missense_Mutation p.G444W 0.20 deleterious(0) probably_damaging(1) TCGA-05-4249-01 17 18023558 18023558 C T MYO15A Nonsense_Mutation p.R482* 0.41 TCGA-05-4249-01 17 20217341 20217341 A T SPECC1 Missense_Mutation p.Q1057L 0.33 tolerated(0.62) possibly_damaging(0.864) TCGA-05-4249-01 17 21825463 21825463 C A FAM27L RNA 0.26 TCGA-05-4249-01 17 27011938 27011938 A T SUPT6H Nonsense_Mutation p.K816* 0.47 TCGA-05-4249-01 17 33448781 33448781 C A FNDC8 Missense_Mutation p.N23K 0.10 tolerated_low_confidence(0.14) benign(0.006) TCGA-05-4249-01 17 34340789 34340789 A C CCL23 Silent p.G99G 0.21 TCGA-05-4249-01 17 39197262 39197262 G - KRTAP1-1 Frame_Shift_Del p.L130Cfs*7 0.23 TCGA-05-4249-01 17 39521447 39521447 G T KRT33B Missense_Mutation p.L286M 0.20 deleterious(0.01) possibly_damaging(0.896) TCGA-05-4249-01 17 39594386 39594386 C A KRT38 Missense_Mutation p.E400D 0.09 deleterious(0) probably_damaging(0.999) TCGA-05-4249-01 17 40966604 40966604 A G BECN1 Silent p.A306A 0.23 TCGA-05-4249-01 17 41143406 41143406 G - RUNDC1 Frame_Shift_Del p.G506Efs*12 0.40 TCGA-05-4249-01 17 46655326 46655326 G T HOXB4 Missense_Mutation p.P119Q 0.16 deleterious(0.03) possibly_damaging(0.88) TCGA-05-4249-01 17 47041781 47041781 G A GIP Missense_Mutation p.P50S 0.10 tolerated(0.08) benign(0.175) TCGA-05-4249-01 17 47583901 47583901 C A NGFR Missense_Mutation p.P150H 0.11 deleterious(0.01) probably_damaging(0.98) TCGA-05-4249-01 17 48631634 48631634 C T SPATA20 Silent p.S660S 0.10 TCGA-05-4249-01 17 59445833 59445833 G T BCAS3 Silent p.R872R 0.21 TCGA-05-4249-01 17 62081303 62081303 A T ICAM2 Missense_Mutation p.L117Q 0.06 deleterious(0) probably_damaging(1) TCGA-05-4249-01 17 7150664 7150664 T A CTDNEP1 Splice_Site p.X35_splice 0.42 TCGA-05-4249-01 17 7317981 7317981 G T NLGN2 Splice_Site p.X220_splice 0.36 TCGA-05-4249-01 17 76567765 76567765 G T DNAH17 Silent p.A213A 0.15 TCGA-05-4249-01 17 80011904 80011904 G A GPS1 Missense_Mutation p.R136H 0.56 tolerated(0.12) benign(0.119) TCGA-05-4249-01 18 29446938 29446938 C A TRAPPC8 Missense_Mutation p.A822S 0.43 deleterious(0.04) possibly_damaging(0.908) TCGA-05-4249-01 18 63511297 63511297 G T CDH7 Missense_Mutation p.V411L 0.12 deleterious(0.04) benign(0.201) TCGA-05-4249-01 19 10080331 10080332 - T COL5A3 Frame_Shift_Ins p.G1340Rfs*9 0.26 TCGA-05-4249-01 19 12719994 12719994 C T ZNF490 Missense_Mutation p.G47E 0.30 tolerated(0.38) benign(0.278) TCGA-05-4249-01 19 22154366 22154366 C A ZNF208 Missense_Mutation p.S1157I 0.23 tolerated(0.54) benign(0.017) TCGA-05-4249-01 19 24010122 24010122 G C RPSAP58 Missense_Mutation p.R53S 0.11 deleterious(0) possibly_damaging(0.474) TCGA-05-4249-01 19 24010315 24010315 G A RPSAP58 Missense_Mutation p.E118K 0.15 deleterious(0.05) benign(0.383) TCGA-05-4249-01 19 30102776 30102776 C G POP4 Missense_Mutation p.L98V 0.26 tolerated(0.07) benign(0.378) TCGA-05-4249-01 19 30935349 30935350 - T ZNF536 Frame_Shift_Ins p.R294Lfs*79 0.31 TCGA-05-4249-01 19 36244981 36244981 G A LIN37 Missense_Mutation p.G170R 0.29 tolerated(0.62) benign(0.172) TCGA-05-4249-01 19 37853356 37853356 G T HKR1 Missense_Mutation p.S220I 0.32 tolerated(0.17) benign(0.125) TCGA-05-4249-01 19 37879423 37879423 A G ZNF527 Missense_Mutation p.T158A 0.45 tolerated(0.36) benign(0.005) TCGA-05-4249-01 19 39522510 39522510 C A FBXO27 Missense_Mutation p.G120C 0.25 deleterious(0.02) probably_damaging(0.996) TCGA-05-4249-01 19 40541960 40541960 C A ZNF780B Missense_Mutation p.S269I 0.18 deleterious(0.04) benign(0.173) TCGA-05-4249-01 19 43348706 43348706 G - PSG10P RNA 0.26 TCGA-05-4249-01 19 43430068 43430068 G T PSG7 Missense_Mutation p.T367K 0.28 tolerated(0.29) probably_damaging(0.962) TCGA-05-4249-01 19 44740634 44740634 G T ZNF227 Missense_Mutation p.G684V 0.25 deleterious(0) probably_damaging(1) TCGA-05-4249-01 19 4511380 4511380 G C PLIN4 Silent p.T850T 0.31 TCGA-05-4249-01 19 50334694 50334694 G T MED25 Missense_Mutation p.W402C 0.37 deleterious(0) probably_damaging(0.998) TCGA-05-4249-01 19 51189549 51189549 G T SHANK1 Missense_Mutation p.P841H 0.22 possibly_damaging(0.738) TCGA-05-4249-01 19 52034721 52034721 C A SIGLEC6 Silent p.T40T 0.11 TCGA-05-4249-01 19 53384141 53384141 T C ZNF320 Missense_Mutation p.Y413C 0.37 deleterious(0.01) probably_damaging(0.982) TCGA-05-4249-01 19 54818626 54818626 C A LILRA5 3'UTR 0.35 TCGA-05-4249-01 19 55086877 55086877 G T LILRA2 Missense_Mutation p.Q270H 0.32 deleterious(0) probably_damaging(0.997) TCGA-05-4249-01 19 55106723 55106723 C A LILRA1 Missense_Mutation p.R173S 0.27 tolerated(0.68) benign(0.017) TCGA-05-4249-01 19 55450745 55450745 G C NLRP7 Missense_Mutation p.A481G 0.35 deleterious(0) possibly_damaging(0.468) TCGA-05-4249-01 19 57802481 57802481 C T ZNF460 Missense_Mutation p.P191L 0.32 deleterious(0.01) benign(0.01) TCGA-05-4249-01 19 58084737 58084737 C A ZNF416 Missense_Mutation p.D179Y 0.29 deleterious(0) benign(0.197) TCGA-05-4249-01 19 58858921 58858921 G T A1BG Silent p.P426P 0.39 TCGA-05-4249-01 19 7805561 7805561 G T CD209 3'UTR 0.24 TCGA-05-4249-01 19 7830732 7830732 G A CLEC4M Silent p.R141R 0.20 TCGA-05-4249-01 19 9062932 9062932 G T MUC16 Missense_Mutation p.L8172I 0.27 unknown(0) TCGA-05-4249-01 1 101185437 101185437 G T VCAM1 Silent p.V7V 0.29 TCGA-05-4249-01 1 1192480 1192480 C A UBE2J2 Silent p.P118P 0.29 TCGA-05-4249-01 1 12908093 12908093 C A HNRNPCL1 Missense_Mutation p.R17L 0.08 deleterious(0) possibly_damaging(0.491) TCGA-05-4249-01 1 145115850 145115850 C A SEC22B RNA 0.14 TCGA-05-4249-01 1 148932875 148932875 G C RP11-14N7.2 RNA 0.18 TCGA-05-4249-01 1 152277110 152277110 C A FLG Missense_Mutation p.A3418S 0.13 unknown(0) TCGA-05-4249-01 1 154317977 154317977 A T ATP8B2 Missense_Mutation p.M917L 0.06 tolerated(1) possibly_damaging(0.867) TCGA-05-4249-01 1 155002563 155002563 G A DCST2 Missense_Mutation p.P392S 0.09 deleterious(0.03) possibly_damaging(0.789) TCGA-05-4249-01 1 157738300 157738300 G T FCRL2 Missense_Mutation p.P263T 0.40 tolerated(0.2) possibly_damaging(0.658) TCGA-05-4249-01 1 158615031 158615031 C A SPTA1 Nonsense_Mutation p.E1381* 0.51 TCGA-05-4249-01 1 159284169 159284169 G A OR10J3 Missense_Mutation p.A94V 0.05 deleterious(0.01) benign(0.015) TCGA-05-4249-01 1 159410018 159410018 T A OR10J1 Missense_Mutation p.L157Q 0.56 tolerated(0.29) benign(0.094) TCGA-05-4249-01 1 159888698 159888698 A G TAGLN2 Silent p.D164D 0.12 TCGA-05-4249-01 1 161654774 161654774 C A RPL31P11 RNA 0.16 TCGA-05-4249-01 1 162313767 162313767 G C NOS1AP Splice_Site p.X199_splice 0.59 TCGA-05-4249-01 1 171755174 171755174 A G METTL13 Missense_Mutation p.R357G 0.06 deleterious(0.03) benign(0.039) TCGA-05-4249-01 1 17257855 17257855 C T CROCC Missense_Mutation p.R307W 0.19 probably_damaging(0.999) TCGA-05-4249-01 1 175324739 175324739 C A TNR Missense_Mutation p.S1050I 0.62 deleterious(0) possibly_damaging(0.772) TCGA-05-4249-01 1 175372653 175372653 G A TNR Missense_Mutation p.S200L 0.11 deleterious(0) possibly_damaging(0.877) TCGA-05-4249-01 1 177226496 177226496 C A BRINP2 Silent p.I215I 0.58 TCGA-05-4249-01 1 186086738 186086738 A G HMCN1 Missense_Mutation p.Y3944C 0.62 probably_damaging(0.999) TCGA-05-4249-01 1 19062359 19062359 C A PAX7 Silent p.G463G 0.14 TCGA-05-4249-01 1 19181144 19181144 C T TAS1R2 Missense_Mutation p.V274M 0.07 deleterious(0) probably_damaging(0.932) TCGA-05-4249-01 1 197411255 197411255 C T CRB1 Intron 0.12 TCGA-05-4249-01 1 203148404 203148404 C A CHI3L1 3'UTR 0.67 TCGA-05-4249-01 1 214791961 214791961 A T CENPF Silent p.A135A 0.12 TCGA-05-4249-01 1 215848813 215848813 G T USH2A Missense_Mutation p.P4147H 0.14 benign(0.015) TCGA-05-4249-01 1 220178627 220178627 C T EPRS Missense_Mutation p.G676R 0.07 deleterious(0) probably_damaging(1) TCGA-05-4249-01 1 22083110 22083110 C T USP48 Missense_Mutation p.R114Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-05-4249-01 1 22150748 22150748 G C LDLRAD2 3'UTR 0.12 TCGA-05-4249-01 1 222761891 222761891 A T TAF1A Missense_Mutation p.S5R 0.08 deleterious(0.03) possibly_damaging(0.844) TCGA-05-4249-01 1 226183030 226183030 T C SDE2 Missense_Mutation p.S59G 0.08 tolerated(0.51) benign(0.003) TCGA-05-4249-01 1 228285785 228285785 G T ARF1 3'UTR 0.60 TCGA-05-4249-01 1 228558786 228558786 C - OBSCN Frame_Shift_Del p.P7727Hfs*9 0.56 TCGA-05-4249-01 1 232619633 232619633 G A SIPA1L2 Missense_Mutation p.T629M 0.09 tolerated(0.16) benign(0.14) TCGA-05-4249-01 1 237713886 237713886 C T RYR2 Missense_Mutation p.L1037F 0.52 probably_damaging(0.997) TCGA-05-4249-01 1 24201556 24201556 T A CNR2 Silent p.P184P 0.16 TCGA-05-4249-01 1 248436566 248436566 C A OR2T33 Missense_Mutation p.R184L 0.08 deleterious(0.02) probably_damaging(0.971) TCGA-05-4249-01 1 248722670 248722670 C G OR2T29 Missense_Mutation p.K41N 0.49 deleterious(0.01) benign(0.001) TCGA-05-4249-01 1 31189047 31189047 C T MATN1 Missense_Mutation p.D306N 0.28 deleterious(0.02) probably_damaging(0.986) TCGA-05-4249-01 1 35579110 35579110 A T ZMYM1 Missense_Mutation p.N560I 0.45 tolerated(0.37) probably_damaging(0.914) TCGA-05-4249-01 1 36181806 36181806 G C C1orf216 Silent p.A39A 0.18 TCGA-05-4249-01 1 44441472 44441472 G T ATP6V0B Missense_Mutation p.G23V 0.30 tolerated(0.54) benign(0.209) TCGA-05-4249-01 1 45508890 45508890 C - ZSWIM5 Splice_Site p.X537_splice 0.43 TCGA-05-4249-01 1 67241985 67241985 G T TCTEX1D1 Missense_Mutation p.V79F 0.35 deleterious(0.01) benign(0.192) TCGA-05-4249-01 1 82409048 82409048 G C LPHN2 Missense_Mutation p.D265H 0.33 deleterious(0.05) probably_damaging(0.998) TCGA-05-4249-01 1 905907 905907 A T PLEKHN1 Missense_Mutation p.S113C 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-05-4249-01 1 92789591 92789591 G C RPAP2 Missense_Mutation p.E372Q 0.16 tolerated(1) benign(0.025) TCGA-05-4249-01 1 9713992 9713992 G A C1orf200 Missense_Mutation p.R117C 0.36 tolerated_low_confidence(0.11) possibly_damaging(0.835) TCGA-05-4249-01 20 20031146 20031146 C A CRNKL1 Nonsense_Mutation p.E219* 0.27 TCGA-05-4249-01 20 2638609 2638609 A C NOP56 Missense_Mutation p.Q485P 0.38 deleterious(0.04) benign(0.153) TCGA-05-4249-01 20 36868046 36868046 G A KIAA1755 Missense_Mutation p.A544V 0.24 tolerated(0.12) benign(0.025) TCGA-05-4249-01 20 43048493 43048493 A C HNF4A Missense_Mutation p.K290T 0.24 deleterious(0) probably_damaging(1) TCGA-05-4249-01 20 61870735 61870735 G T BIRC7 Missense_Mutation p.Q225H 0.53 tolerated(0.11) benign(0.135) TCGA-05-4249-01 21 11038750 11038750 G T BAGE2 RNA 0.05 TCGA-05-4249-01 21 11049484 11049484 G C BAGE2 RNA 0.05 TCGA-05-4249-01 21 14983042 14983042 G T POTED Missense_Mutation p.D165Y 0.14 deleterious(0) probably_damaging(0.996) TCGA-05-4249-01 21 28296491 28296491 C G ADAMTS5 Missense_Mutation p.D892H 0.26 deleterious(0) probably_damaging(1) TCGA-05-4249-01 21 31798219 31798219 G T KRTAP13-3 Missense_Mutation p.N4K 0.17 deleterious(0.04) benign(0.248) TCGA-05-4249-01 21 32253670 32253670 C G KRTAP11-1 Missense_Mutation p.E58D 0.28 deleterious(0) possibly_damaging(0.656) TCGA-05-4249-01 21 34922564 34922564 C T SON Missense_Mutation p.P343S 0.28 possibly_damaging(0.641) TCGA-05-4249-01 21 34923302 34923302 G T SON Missense_Mutation p.V589L 0.20 benign(0.097) TCGA-05-4249-01 21 37618548 37618548 A T DOPEY2 Missense_Mutation p.I1424F 0.12 deleterious(0) probably_damaging(0.917) TCGA-05-4249-01 21 40191577 40191577 C T ETS2 Missense_Mutation p.S321F 0.18 tolerated(0.08) benign(0.406) TCGA-05-4249-01 21 47542430 47542430 C G COL6A2 Silent p.G531G 0.07 TCGA-05-4249-01 22 17072057 17072057 C G CCT8L2 Missense_Mutation p.D462H 0.26 tolerated(0.07) benign(0.01) TCGA-05-4249-01 22 17072155 17072155 C T CCT8L2 Missense_Mutation p.R429K 0.35 tolerated(1) benign(0.004) TCGA-05-4249-01 22 17072228 17072228 C G CCT8L2 Missense_Mutation p.D405H 0.35 deleterious(0) probably_damaging(1) TCGA-05-4249-01 22 17072351 17072351 C G CCT8L2 Missense_Mutation p.E364Q 0.23 deleterious(0.02) probably_damaging(0.989) TCGA-05-4249-01 22 17072376 17072376 C G CCT8L2 Silent p.L355L 0.25 TCGA-05-4249-01 22 17073279 17073279 G T CCT8L2 Missense_Mutation p.H54Q 0.24 tolerated(0.34) benign(0.019) TCGA-05-4249-01 22 17073380 17073380 C T CCT8L2 Missense_Mutation p.E21K 0.24 tolerated(0.82) benign(0.001) TCGA-05-4249-01 22 17073395 17073395 C T CCT8L2 Missense_Mutation p.A16T 0.25 tolerated_low_confidence(0.42) benign(0.026) TCGA-05-4249-01 22 18301671 18301671 C A MICAL3 Silent p.T1252T 0.47 TCGA-05-4249-01 22 39445556 39445556 C G APOBEC3F Silent p.V231V 0.14 TCGA-05-4249-01 22 41615532 41615532 A T L3MBTL2 Missense_Mutation p.Q237L 0.37 deleterious(0.01) possibly_damaging(0.449) TCGA-05-4249-01 22 44527413 44527413 C T PARVB Silent p.S174S 0.11 TCGA-05-4249-01 2 103095664 103095664 C T SLC9A4 Missense_Mutation p.P208L 0.25 deleterious(0.03) probably_damaging(0.959) TCGA-05-4249-01 2 107007489 107007489 C A PLGLA RNA 0.25 TCGA-05-4249-01 2 107007493 107007493 C A PLGLA RNA 0.25 TCGA-05-4249-01 2 108881745 108881745 T C SULT1C3 Missense_Mutation p.F285L 0.28 tolerated(0.05) probably_damaging(0.945) TCGA-05-4249-01 2 128088066 128088066 T C MAP3K2 Missense_Mutation p.T94A 0.15 tolerated(0.26) benign(0.006) TCGA-05-4249-01 2 141812830 141812830 T A LRP1B Splice_Site p.X470_splice 0.22 TCGA-05-4249-01 2 1426848 1426848 C A TPO Silent p.V42V 0.27 TCGA-05-4249-01 2 152522052 152522052 T A NEB Missense_Mutation p.N1678I 0.36 benign(0.298) TCGA-05-4249-01 2 165997321 165997321 C T SCN3A Missense_Mutation p.R620Q 0.25 tolerated(0.07) probably_damaging(0.997) TCGA-05-4249-01 2 175111467 175111467 C A OLA1 Missense_Mutation p.G26V 0.22 deleterious(0) probably_damaging(1) TCGA-05-4249-01 2 179415733 179415733 A T TTN Missense_Mutation p.S30509T 0.24 TCGA-05-4249-01 2 179422644 179422644 A T TTN Missense_Mutation p.V29146D 0.14 TCGA-05-4249-01 2 179474458 179474458 C A TTN Missense_Mutation p.S17231I 0.26 TCGA-05-4249-01 2 179610734 179610734 G T TTN Intron 0.28 TCGA-05-4249-01 2 207437900 207437900 G T ADAM23 Missense_Mutation p.C573F 0.27 deleterious(0) probably_damaging(1) TCGA-05-4249-01 2 21233375 21233375 G T APOB Missense_Mutation p.A2122D 0.46 benign(0.188) TCGA-05-4249-01 2 219503486 219503486 C A ZNF142 Missense_Mutation p.R1547L 0.28 deleterious(0) possibly_damaging(0.569) TCGA-05-4249-01 2 219562210 219562210 C T STK36 Missense_Mutation p.A929V 0.19 tolerated(0.07) probably_damaging(0.945) TCGA-05-4249-01 2 219563440 219563440 C T STK36 Missense_Mutation p.S1058F 0.29 tolerated(0.11) benign(0.019) TCGA-05-4249-01 2 220379514 220379514 C A ASIC4 Missense_Mutation p.A150E 0.23 tolerated(0.34) benign(0.007) TCGA-05-4249-01 2 225376300 225376300 C T CUL3 Splice_Site p.X219_splice 0.35 TCGA-05-4249-01 2 232141472 232141472 C G ARMC9 Silent p.L486L 0.08 TCGA-05-4249-01 2 233075098 233075098 G T DIS3L2 Missense_Mutation p.C396F 0.23 deleterious(0) probably_damaging(0.999) TCGA-05-4249-01 2 27590037 27590037 C A EIF2B4 Missense_Mutation p.R326L 0.28 tolerated(0.1) benign(0.017) TCGA-05-4249-01 2 50318616 50318616 C A NRXN1 Missense_Mutation p.G1228V 0.27 tolerated(0.39) possibly_damaging(0.562) TCGA-05-4249-01 2 68413773 68413773 T C PPP3R1 Missense_Mutation p.I98V 0.37 tolerated(0.6) benign(0.011) TCGA-05-4249-01 2 68607985 68607985 C A PLEK Missense_Mutation p.A110D 0.31 tolerated(0.32) benign(0.305) TCGA-05-4249-01 2 70314810 70314810 C T PCBP1 5'UTR 0.33 TCGA-05-4249-01 2 77745546 77745546 C A LRRTM4 Missense_Mutation p.E483D 0.10 deleterious(0.02) probably_damaging(0.99) TCGA-05-4249-01 2 90108952 90108952 C A IGKV6D-41 Missense_Mutation p.Q73K 0.26 tolerated(0.19) benign(0.006) TCGA-05-4249-01 3 100963143 100963143 C A IMPG2 Nonsense_Mutation p.E678* 0.40 TCGA-05-4249-01 3 108159970 108159970 C A MYH15 Missense_Mutation p.R951S 0.19 deleterious(0.04) possibly_damaging(0.521) TCGA-05-4249-01 3 119134364 119134364 G T ARHGAP31 Missense_Mutation p.Q1196H 0.13 deleterious(0) probably_damaging(0.998) TCGA-05-4249-01 3 121206886 121206886 C G POLQ Missense_Mutation p.W1631S 0.27 deleterious(0) probably_damaging(0.981) TCGA-05-4249-01 3 122420301 122420301 T A PARP14 Missense_Mutation p.V967D 0.18 deleterious(0) possibly_damaging(0.63) TCGA-05-4249-01 3 141327427 141327427 C T RASA2 Nonsense_Mutation p.R705* 0.19 TCGA-05-4249-01 3 167068302 167068302 A T ZBBX Missense_Mutation p.V145E 0.33 deleterious(0) possibly_damaging(0.854) TCGA-05-4249-01 3 167086333 167086333 A T ZBBX Missense_Mutation p.V33E 0.36 deleterious(0.02) benign(0.077) TCGA-05-4249-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.28 deleterious(0.02) probably_damaging(0.959) TCGA-05-4249-01 3 183432964 183432964 A T YEATS2 Missense_Mutation p.K5M 0.41 deleterious(0) probably_damaging(0.935) TCGA-05-4249-01 3 195953990 195953990 G A SLC51A Silent p.T96T 0.17 TCGA-05-4249-01 3 27498176 27498176 G A SLC4A7 5'UTR 0.44 TCGA-05-4249-01 3 49569641 49569641 A G DAG1 Missense_Mutation p.D566G 0.19 tolerated(0.11) possibly_damaging(0.872) TCGA-05-4249-01 3 51392314 51392314 A G DOCK3 Missense_Mutation p.N1370S 0.27 deleterious(0.03) benign(0.015) TCGA-05-4249-01 3 52553536 52553536 G A STAB1 Missense_Mutation p.A1731T 0.15 tolerated(0.08) benign(0.165) TCGA-05-4249-01 3 77595510 77595510 G A ROBO2 Missense_Mutation p.R335Q 0.19 tolerated(0.26) possibly_damaging(0.553) TCGA-05-4249-01 3 77612382 77612382 G T ROBO2 Silent p.P544P 0.26 TCGA-05-4249-01 4 110687980 110687980 C G CFI Missense_Mutation p.V20L 0.11 tolerated(0.61) benign(0.001) TCGA-05-4249-01 4 113356422 113356422 G T ALPK1 Missense_Mutation p.W1051C 0.35 deleterious(0) probably_damaging(1) TCGA-05-4249-01 4 126239750 126239750 A G FAT4 Missense_Mutation p.I728M 0.18 benign(0.175) TCGA-05-4249-01 4 151773298 151773298 T A LRBA Silent p.S1188S 0.29 TCGA-05-4249-01 4 153864685 153864685 C T FHDC1 Missense_Mutation p.S159F 0.17 deleterious(0) possibly_damaging(0.838) TCGA-05-4249-01 4 167656177 167656177 C T SPOCK3 Silent p.E402E 0.33 TCGA-05-4249-01 4 177190270 177190270 G T ASB5 5'UTR 0.30 TCGA-05-4249-01 4 17805366 17805366 C A DCAF16 Silent p.R133R 0.34 TCGA-05-4249-01 4 183676073 183676073 A C TENM3 Missense_Mutation p.D1518A 0.27 tolerated(0.21) benign(0.015) TCGA-05-4249-01 4 31144129 31144129 G T PCDH7 Silent p.G1142G 0.17 TCGA-05-4249-01 4 39408690 39408690 C A KLB Missense_Mutation p.L41M 0.23 deleterious(0.02) possibly_damaging(0.839) TCGA-05-4249-01 4 39408691 39408691 T A KLB Missense_Mutation p.L41Q 0.22 deleterious(0) probably_damaging(0.935) TCGA-05-4249-01 4 47556801 47556801 G T ATP10D Missense_Mutation p.R565L 0.20 tolerated(0.65) benign(0.004) TCGA-05-4249-01 4 647926 647926 C A PDE6B Missense_Mutation p.R304S 0.30 tolerated(0.13) probably_damaging(0.947) TCGA-05-4249-01 4 72631270 72631270 C A GC Nonsense_Mutation p.E137* 0.28 TCGA-05-4249-01 4 84348734 84348734 C A HELQ Missense_Mutation p.W886C 0.29 deleterious(0) probably_damaging(0.971) TCGA-05-4249-01 5 140176000 140176000 C A PCDHA2 Missense_Mutation p.A484E 0.27 deleterious_low_confidence(0.04) possibly_damaging(0.534) TCGA-05-4249-01 5 140256796 140256796 T A PCDHA12 Nonsense_Mutation p.L580* 0.31 TCGA-05-4249-01 5 140480154 140480154 G - PCDHB3 5'Flank 0.34 TCGA-05-4249-01 5 140564342 140564342 G T PCDHB16 Silent p.L736L 0.19 TCGA-05-4249-01 5 140793377 140793377 A G PCDHGA10 Missense_Mutation p.H212R 0.32 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-05-4249-01 5 140797646 140797646 C A PCDHGB7 Missense_Mutation p.H74N 0.29 deleterious(0.01) possibly_damaging(0.588) TCGA-05-4249-01 5 147796641 147796641 G T FBXO38 Missense_Mutation p.D498Y 0.22 deleterious(0.01) probably_damaging(0.966) TCGA-05-4249-01 5 149435795 149435795 A G CSF1R Missense_Mutation p.I810T 0.39 deleterious(0) possibly_damaging(0.849) TCGA-05-4249-01 5 167674480 167674480 A G TENM2 Missense_Mutation p.Y2179C 0.26 deleterious(0) probably_damaging(0.999) TCGA-05-4249-01 5 179149988 179149988 G T CANX Missense_Mutation p.G456C 0.14 deleterious(0.01) possibly_damaging(0.604) TCGA-05-4249-01 5 33577084 33577084 G T ADAMTS12 Missense_Mutation p.P1016Q 0.15 tolerated(0.65) benign(0.002) TCGA-05-4249-01 5 33683976 33683976 G T ADAMTS12 Silent p.T273T 0.29 TCGA-05-4249-01 5 41004553 41004553 A G MROH2B Silent p.C1363C 0.25 TCGA-05-4249-01 5 43704593 43704593 A T NNT 3'UTR 0.46 TCGA-05-4249-01 5 454086 454086 G T EXOC3 Silent p.R322R 0.15 TCGA-05-4249-01 5 52360751 52360751 G T ITGA2 Missense_Mutation p.G538C 0.29 tolerated(0.08) possibly_damaging(0.487) TCGA-05-4249-01 5 52778792 52778792 C A FST Nonsense_Mutation p.C56* 0.34 TCGA-05-4249-01 5 54654435 54654435 G C SKIV2L2 Missense_Mutation p.R523P 0.14 deleterious(0) probably_damaging(1) TCGA-05-4249-01 5 75427939 75427939 G T SV2C Nonsense_Mutation p.E122* 0.30 TCGA-05-4249-01 5 79375018 79375018 G A THBS4 Silent p.T816T 0.15 TCGA-05-4249-01 6 105609367 105609367 T G POPDC3 Missense_Mutation p.K140Q 0.27 tolerated(0.27) possibly_damaging(0.635) TCGA-05-4249-01 6 107019885 107019885 T A RTN4IP1 Missense_Mutation p.I393F 0.15 deleterious(0) possibly_damaging(0.724) TCGA-05-4249-01 6 116289825 116289827 TTC - FRK In_Frame_Del p.R181del 0.16 TCGA-05-4249-01 6 129649532 129649532 G T LAMA2 Missense_Mutation p.C1429F 0.33 deleterious(0) probably_damaging(1) TCGA-05-4249-01 6 132695975 132695975 A T MOXD1 Intron 0.25 TCGA-05-4249-01 6 144844318 144844318 G T UTRN Missense_Mutation p.R1967L 0.42 deleterious(0) benign(0.115) TCGA-05-4249-01 6 146276182 146276182 A - SHPRH Frame_Shift_Del p.S93Pfs*5 0.09 TCGA-05-4249-01 6 146720730 146720730 C A GRM1 Missense_Mutation p.T852N 0.24 deleterious(0) probably_damaging(1) TCGA-05-4249-01 6 161135878 161135878 C A PLG Silent p.T200T 0.38 TCGA-05-4249-01 6 167753913 167753913 C A TTLL2 Nonsense_Mutation p.Y175* 0.31 TCGA-05-4249-01 6 169648860 169648860 C A THBS2 Silent p.T87T 0.22 TCGA-05-4249-01 6 29574725 29574725 G A GABBR1 Silent p.V722V 0.27 TCGA-05-4249-01 6 31843659 31843659 G A SLC44A4 Missense_Mutation p.T71I 0.32 tolerated(0.17) possibly_damaging(0.862) TCGA-05-4249-01 6 39278775 39278775 G A KCNK17 Silent p.V82V 0.25 TCGA-05-4249-01 6 39330242 39330242 C A KIF6 Missense_Mutation p.K638N 0.17 tolerated(0.52) benign(0.006) TCGA-05-4249-01 6 46293311 46293311 G T RCAN2 Intron 0.50 TCGA-05-4249-01 6 54191689 54191689 T A TINAG Missense_Mutation p.M200K 0.37 tolerated(0.36) benign(0.001) TCGA-05-4249-01 6 69348714 69348714 T A BAI3 Silent p.P49P 0.44 TCGA-05-4249-01 6 75844451 75844451 C A COL12A1 Missense_Mutation p.G1839C 0.35 probably_damaging(1) TCGA-05-4249-01 6 90503894 90503894 C G MDN1 Missense_Mutation p.C196S 0.35 benign(0.002) TCGA-05-4249-01 7 100771819 100771819 G T SERPINE1 Missense_Mutation p.A49S 0.36 tolerated(0.93) benign(0.017) TCGA-05-4249-01 7 103126853 103126853 G T RELN Nonsense_Mutation p.C3258* 0.53 TCGA-05-4249-01 7 107115753 107115753 T A GPR22 Missense_Mutation p.F416L 0.58 tolerated(0.95) benign(0.066) TCGA-05-4249-01 7 140301877 140301877 C T DENND2A Silent p.E107E 0.50 TCGA-05-4249-01 7 140434413 140434413 G T BRAF Missense_Mutation p.A762E 0.48 tolerated(0.28) benign(0.001) TCGA-05-4249-01 7 142180669 142180669 G T TRBV6-5 Missense_Mutation p.L64M 0.33 deleterious(0) probably_damaging(0.992) TCGA-05-4249-01 7 142247218 142247218 G T TRBV7-3 Missense_Mutation p.P80T 0.49 TCGA-05-4249-01 7 144015683 144015683 C A OR2A1 Missense_Mutation p.L156M 0.26 tolerated(0.09) benign(0.417) TCGA-05-4249-01 7 150389570 150389570 G T GIMAP2 Nonsense_Mutation p.G66* 0.67 TCGA-05-4249-01 7 151962157 151962157 G C KMT2C Missense_Mutation p.Q384E 0.07 probably_damaging(0.989) TCGA-05-4249-01 7 36483457 36483457 G A ANLN Missense_Mutation p.D1022N 0.44 deleterious(0) probably_damaging(0.999) TCGA-05-4249-01 7 82764745 82764745 C T PCLO Silent p.V707V 0.16 TCGA-05-4249-01 7 92164123 92164123 A G RBM48 Missense_Mutation p.R286G 0.43 deleterious(0) probably_damaging(0.972) TCGA-05-4249-01 8 10470214 10470214 G T RP1L1 Nonsense_Mutation p.S465* 0.16 TCGA-05-4249-01 8 104955095 104955095 C A RIMS2 Missense_Mutation p.P881H 0.49 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-05-4249-01 8 10555360 10555360 G T C8orf74 Nonsense_Mutation p.E165* 0.34 TCGA-05-4249-01 8 108264099 108264099 C T ANGPT1 Missense_Mutation p.R494Q 0.14 deleterious(0) probably_damaging(1) TCGA-05-4249-01 8 113314033 113314033 G T CSMD3 Missense_Mutation p.T2810N 0.22 deleterious(0.05) possibly_damaging(0.772) TCGA-05-4249-01 8 113702259 113702259 C G CSMD3 Missense_Mutation p.G665R 0.37 deleterious(0) probably_damaging(1) TCGA-05-4249-01 8 113988072 113988072 G T CSMD3 Missense_Mutation p.H446N 0.34 tolerated(0.11) benign(0.02) TCGA-05-4249-01 8 120431528 120431528 G T NOV Missense_Mutation p.Q240H 0.25 deleterious(0) probably_damaging(0.963) TCGA-05-4249-01 8 1497520 1497520 G T DLGAP2 Missense_Mutation p.D221Y 0.37 deleterious(0) probably_damaging(1) TCGA-05-4249-01 8 30704102 30704102 T A TEX15 Missense_Mutation p.N811I 0.19 deleterious(0.01) possibly_damaging(0.847) TCGA-05-4249-01 8 38884248 38884248 G T ADAM9 Missense_Mutation p.G350V 0.31 deleterious(0) probably_damaging(1) TCGA-05-4249-01 8 39624713 39624713 C A ADAM2 Missense_Mutation p.G424C 0.28 deleterious(0) probably_damaging(0.984) TCGA-05-4249-01 8 70585057 70585057 C T SLCO5A1 3'UTR 0.42 TCGA-05-4249-01 8 72984007 72984007 A T TRPA1 Nonsense_Mutation p.Y69* 0.21 TCGA-05-4249-01 8 87498776 87498776 A T RMDN1 Nonsense_Mutation p.Y144* 0.45 TCGA-05-4249-01 8 97797349 97797349 G T CPQ Missense_Mutation p.G75V 0.15 deleterious(0) probably_damaging(0.998) TCGA-05-4249-01 8 99264759 99264759 C A NIPAL2 Missense_Mutation p.G103V 0.16 deleterious(0) probably_damaging(1) TCGA-05-4249-01 9 103348672 103348672 A T MURC Missense_Mutation p.K345I 0.44 deleterious_low_confidence(0.01) probably_damaging(0.962) TCGA-05-4249-01 9 104189921 104189921 A T ALDOB Missense_Mutation p.L128H 0.19 deleterious(0.02) possibly_damaging(0.856) TCGA-05-4249-01 9 107367202 107367202 T A OR13C2 Missense_Mutation p.K236I 0.35 deleterious(0) probably_damaging(1) TCGA-05-4249-01 9 114305028 114305028 A G ZNF483 Missense_Mutation p.K605E 0.39 deleterious(0) possibly_damaging(0.477) TCGA-05-4249-01 9 119770520 119770520 C T ASTN2 Missense_Mutation p.S430N 0.17 tolerated(0.96) unknown(0) TCGA-05-4249-01 9 13188859 13188859 C A MPDZ Missense_Mutation p.S763I 0.25 deleterious(0) possibly_damaging(0.847) TCGA-05-4249-01 9 134334625 134334625 G C PRRC2B Missense_Mutation p.R429P 0.27 tolerated(0.38) benign(0) TCGA-05-4249-01 9 138556120 138556120 G T LCN9 Missense_Mutation p.S70I 0.37 deleterious(0) probably_damaging(0.975) TCGA-05-4249-01 9 15784550 15784550 T G CCDC171 Missense_Mutation p.L1042R 0.13 deleterious(0) probably_damaging(1) TCGA-05-4249-01 9 16436214 16436214 G T BNC2 Missense_Mutation p.P660T 0.12 tolerated(0.1) benign(0) TCGA-05-4249-01 9 2101582 2101582 G C SMARCA2 Missense_Mutation p.E1031Q 0.14 benign(0.403) TCGA-05-4249-01 9 3263012 3263012 G C RFX3 Missense_Mutation p.R510G 0.38 deleterious(0) probably_damaging(0.989) TCGA-05-4249-01 9 33473885 33473885 T A NOL6 5'UTR 0.28 TCGA-05-4249-01 9 34627853 34627853 C A ARID3C Missense_Mutation p.E53D 0.45 tolerated_low_confidence(0.06) possibly_damaging(0.636) TCGA-05-4249-01 9 73151524 73151524 G T TRPM3 Missense_Mutation p.P1490H 0.41 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-05-4249-01 9 73218374 73218374 C A TRPM3 Nonsense_Mutation p.G882* 0.35 TCGA-05-4249-01 9 74313084 74313084 C A TMEM2 Missense_Mutation p.R1138S 0.38 deleterious(0) probably_damaging(0.96) TCGA-05-4249-01 9 79118029 79118029 G T GCNT1 Silent p.T244T 0.12 TCGA-05-4249-01 9 86571450 86571450 C A C9orf64 5'UTR 0.38 TCGA-05-4249-01 9 86593299 86593299 T C HNRNPK 5'UTR 0.39 TCGA-05-4249-01 9 88881102 88881103 - A ISCA1 Frame_Shift_Ins p.R83Qfs*21 0.18 TCGA-05-4249-01 X 107814662 107814662 G T COL4A5 Missense_Mutation p.G135V 0.64 unknown(0) TCGA-05-4249-01 X 110988103 110988103 G A ALG13 Missense_Mutation p.C968Y 0.73 tolerated(0.4) benign(0.007) TCGA-05-4249-01 X 111020010 111020010 G T TRPC5 Missense_Mutation p.P818Q 0.61 tolerated_low_confidence(0.39) benign(0.001) TCGA-05-4249-01 X 111874652 111874652 G T LHFPL1 Missense_Mutation p.P220H 0.50 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-05-4249-01 X 12938519 12938519 C T TLR8 Nonsense_Mutation p.R454* 0.60 TCGA-05-4249-01 X 152860006 152860006 T - FAM58A Frame_Shift_Del p.K141Sfs*14 0.46 TCGA-05-4249-01 X 31090140 31090140 G T FTHL17 5'UTR 0.63 TCGA-05-4249-01 X 48546470 48546470 C A WAS Silent p.P254P 0.24 TCGA-05-4250-01 10 118228809 118228809 G C PNLIPRP3 Missense_Mutation p.G347A 0.21 tolerated(0.08) possibly_damaging(0.77) TCGA-05-4250-01 10 118228810 118228810 G T PNLIPRP3 Silent p.G347G 0.23 TCGA-05-4250-01 10 120354273 120354273 C G PRLHR Missense_Mutation p.V162L 0.17 deleterious(0.03) possibly_damaging(0.677) TCGA-05-4250-01 10 124753980 124753980 G T IKZF5 Missense_Mutation p.S192R 0.18 tolerated(0.57) benign(0.07) TCGA-05-4250-01 10 128118366 128118366 G A C10orf90 Nonsense_Mutation p.R651* 0.17 TCGA-05-4250-01 10 129152931 129152931 A G DOCK1 Splice_Site p.X1054_splice 0.19 TCGA-05-4250-01 10 129902310 129902310 C A MKI67 Silent p.T2598T 0.33 TCGA-05-4250-01 10 18291988 18291988 C - SLC39A12 Intron 0.30 TCGA-05-4250-01 10 31809098 31809098 C T ZEB1 Missense_Mutation p.H280Y 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-05-4250-01 10 48387854 48387854 C A RBP3 Missense_Mutation p.K1008N 0.39 tolerated(0.14) benign(0.403) TCGA-05-4250-01 10 56128953 56128953 C T PCDH15 Missense_Mutation p.R134Q 0.23 tolerated(0.17) probably_damaging(0.963) TCGA-05-4250-01 10 72298908 72298908 T C PALD1 Missense_Mutation p.W544R 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-05-4250-01 10 73472617 73472617 G A C10orf105 3'UTR 0.30 TCGA-05-4250-01 10 95276915 95276916 AG - CEP55 Frame_Shift_Del p.K303Dfs*9 0.22 TCGA-05-4250-01 10 98363772 98363772 G A PIK3AP1 Silent p.L735L 0.16 TCGA-05-4250-01 11 102816471 102816471 C T MMP13 Missense_Mutation p.D407N 0.15 tolerated(0.21) possibly_damaging(0.566) TCGA-05-4250-01 11 1102476 1102476 C A MUC2 Silent p.A2620A 0.26 TCGA-05-4250-01 11 123597574 123597574 C T ZNF202 Missense_Mutation p.D360N 0.59 tolerated(0.36) benign(0.016) TCGA-05-4250-01 11 20070465 20070465 C T NAV2 Missense_Mutation p.S1388F 0.25 deleterious(0) probably_damaging(0.997) TCGA-05-4250-01 11 31531495 31531495 C T ELP4 Missense_Mutation p.S55L 0.14 deleterious(0) probably_damaging(0.993) TCGA-05-4250-01 11 3380968 3380968 C A ZNF195 Missense_Mutation p.D424Y 0.20 tolerated(0.43) probably_damaging(0.996) TCGA-05-4250-01 11 47364216 47364216 T C MYBPC3 Missense_Mutation p.I513V 0.61 tolerated(0.14) benign(0.07) TCGA-05-4250-01 11 5443760 5443760 C T OR51Q1 Silent p.S110S 0.58 TCGA-05-4250-01 11 55371295 55371295 A T OR4C11 Silent p.L185L 0.69 TCGA-05-4250-01 11 55595263 55595263 C A OR5L2 Missense_Mutation p.S190Y 0.57 deleterious(0.02) benign(0.056) TCGA-05-4250-01 11 56344619 56344619 A T OR5M10 Silent p.R193R 0.56 TCGA-05-4250-01 11 56409724 56409724 G - OR5AP2 Frame_Shift_Del p.M65Cfs*11 0.43 TCGA-05-4250-01 11 57258837 57258837 T A SLC43A1 Splice_Site p.X352_splice 0.11 TCGA-05-4250-01 11 60620811 60620811 G A PTGDR2 Missense_Mutation p.R129C 0.50 deleterious(0) probably_damaging(1) TCGA-05-4250-01 11 62444254 62444254 C G UBXN1 Missense_Mutation p.R292T 0.23 deleterious_low_confidence(0.02) benign(0) TCGA-05-4250-01 11 93778921 93778921 G C HEPHL1 Missense_Mutation p.G85R 0.16 tolerated(0.23) benign(0.006) TCGA-05-4250-01 12 10132026 10132026 G T CLEC12A Missense_Mutation p.M104I 0.67 tolerated(0.32) benign(0.026) TCGA-05-4250-01 12 101728221 101728221 G C UTP20 Missense_Mutation p.E1194Q 0.15 deleterious(0) possibly_damaging(0.878) TCGA-05-4250-01 12 107209055 107209055 G C RIC8B Silent p.T238T 0.36 TCGA-05-4250-01 12 108604018 108604018 G C WSCD2 Silent p.V206V 0.25 TCGA-05-4250-01 12 114837405 114837405 G T TBX5 Missense_Mutation p.T92K 0.19 deleterious(0) benign(0.22) TCGA-05-4250-01 12 115112623 115112623 C T TBX3 Missense_Mutation p.G373S 0.39 tolerated(0.47) benign(0.034) TCGA-05-4250-01 12 124885199 124885199 G A NCOR2 Missense_Mutation p.S554L 0.20 unknown(0) TCGA-05-4250-01 12 21196342 21196342 G A SLCO1B7 Missense_Mutation p.V221I 0.65 tolerated(0.67) benign(0.011) TCGA-05-4250-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.54 deleterious(0.04) probably_damaging(0.993) TCGA-05-4250-01 12 29659837 29659837 G T TMTC1 Missense_Mutation p.A864D 0.34 deleterious(0.02) possibly_damaging(0.844) TCGA-05-4250-01 12 4791405 4791405 T C NDUFA9 Missense_Mutation p.Y279H 0.24 deleterious(0) probably_damaging(0.928) TCGA-05-4250-01 12 52910540 52910540 C T KRT5 Silent p.Q440Q 0.14 TCGA-05-4250-01 12 52981431 52981431 C G KRT72 Missense_Mutation p.E432Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-05-4250-01 12 53722569 53722569 C G SP7 Silent p.G219G 0.16 TCGA-05-4250-01 12 57619152 57619152 G T NXPH4 Missense_Mutation p.E183D 0.36 tolerated(0.12) benign(0.064) TCGA-05-4250-01 12 57871282 57871282 C A ARHGAP9 Missense_Mutation p.C239F 0.33 deleterious(0.03) possibly_damaging(0.632) TCGA-05-4250-01 12 58020640 58020640 C T B4GALNT1 Missense_Mutation p.G497R 0.24 tolerated(0.52) benign(0.001) TCGA-05-4250-01 12 64485100 64485100 G T SRGAP1 Missense_Mutation p.R494M 0.19 deleterious(0.02) possibly_damaging(0.576) TCGA-05-4250-01 12 64895307 64895307 A T TBK1 3'UTR 0.18 TCGA-05-4250-01 12 71978710 71978710 A G LGR5 3'UTR 0.25 TCGA-05-4250-01 12 76739847 76739847 T A BBS10 Missense_Mutation p.I640F 0.14 deleterious(0) possibly_damaging(0.729) TCGA-05-4250-01 12 85255532 85255532 C G SLC6A15 Missense_Mutation p.G691A 0.19 tolerated_low_confidence(1) benign(0.04) TCGA-05-4250-01 12 86373286 86373286 C A MGAT4C Missense_Mutation p.L406F 0.28 deleterious(0) probably_damaging(0.946) TCGA-05-4250-01 12 95645844 95645844 A G VEZT Silent p.P55P 0.25 TCGA-05-4250-01 13 111973266 111973266 C A TEX29 Missense_Mutation p.S10Y 0.20 deleterious(0) possibly_damaging(0.781) TCGA-05-4250-01 13 113510353 113510353 G T ATP11A Missense_Mutation p.C791F 0.41 deleterious(0) probably_damaging(0.993) TCGA-05-4250-01 13 32698990 32698990 A C FRY Missense_Mutation p.I232L 0.46 deleterious(0.04) benign(0.107) TCGA-05-4250-01 13 36776079 36776079 A G SOHLH2 Missense_Mutation p.M144T 0.45 deleterious(0) benign(0.212) TCGA-05-4250-01 13 38266167 38266167 G T TRPC4 Silent p.I401I 0.57 TCGA-05-4250-01 13 41706687 41706687 C A KBTBD6 5'UTR 0.51 TCGA-05-4250-01 13 51957877 51957877 G A INTS6 Missense_Mutation p.P299S 0.04 deleterious(0.02) probably_damaging(0.997) TCGA-05-4250-01 13 53624885 53624885 T A OLFM4 Silent p.S504S 0.56 TCGA-05-4250-01 13 72440100 72440100 A G DACH1 Missense_Mutation p.S270P 0.23 probably_damaging(0.947) TCGA-05-4250-01 13 96438214 96438214 C T DNAJC3 Missense_Mutation p.A366V 0.26 deleterious(0) probably_damaging(0.994) TCGA-05-4250-01 14 105685542 105685542 C A BRF1 Missense_Mutation p.V469L 0.20 tolerated(0.15) benign(0.249) TCGA-05-4250-01 14 20850850 20850850 C A TEP1 Nonsense_Mutation p.E1358* 0.20 TCGA-05-4250-01 14 32563253 32563253 A G ARHGAP5 Silent p.V1126V 0.20 TCGA-05-4250-01 14 34419700 34419700 C A EGLN3 Missense_Mutation p.G87C 0.23 deleterious(0.01) benign(0.071) TCGA-05-4250-01 14 34419701 34419701 C A EGLN3 Missense_Mutation p.E86D 0.23 tolerated(0.08) benign(0.001) TCGA-05-4250-01 14 61264872 61264872 G - MNAT1 Frame_Shift_Del p.E104Kfs*6 0.12 TCGA-05-4250-01 14 63416870 63416870 C G KCNH5 Silent p.V450V 0.41 TCGA-05-4250-01 14 70634945 70634945 C A SLC8A3 Silent p.P65P 0.18 TCGA-05-4250-01 14 71542904 71542904 A T PCNX Splice_Site p.X1703_splice 0.37 TCGA-05-4250-01 14 75248655 75248655 G T YLPM1 Nonsense_Mutation p.G637* 0.22 TCGA-05-4250-01 14 88658611 88658611 C A KCNK10 Silent p.V275V 0.45 TCGA-05-4250-01 14 89087598 89087599 - C EML5 Frame_Shift_Ins p.E1688Rfs*7 0.12 TCGA-05-4250-01 14 92922951 92922951 G A SLC24A4 Silent p.P418P 0.20 TCGA-05-4250-01 14 92959832 92959832 C G SLC24A4 Missense_Mutation p.H577D 0.24 deleterious(0) probably_damaging(0.984) TCGA-05-4250-01 14 93962756 93962756 G A UNC79 Splice_Site p.X61_splice 0.16 TCGA-05-4250-01 15 25446491 25446491 T C SNORD115-17 RNA 0.22 TCGA-05-4250-01 15 28457617 28457617 T C HERC2 Missense_Mutation p.K2300R 0.38 possibly_damaging(0.452) TCGA-05-4250-01 15 31222754 31222754 C T FAN1 Silent p.V932V 0.18 TCGA-05-4250-01 15 33357125 33357125 C A FMN1 Intron 0.38 TCGA-05-4250-01 15 34102736 34102736 C G RYR3 Silent p.S3361S 0.41 TCGA-05-4250-01 15 34648156 34648156 C A NUTM1 Silent p.P621P 0.33 TCGA-05-4250-01 15 35746951 35746951 T A DPH6 Missense_Mutation p.N128I 0.23 deleterious(0) benign(0.371) TCGA-05-4250-01 15 42729559 42729559 T G ZNF106 Silent p.P1516P 0.33 TCGA-05-4250-01 15 45545435 45545435 C A SLC28A2 Missense_Mutation p.Q8K 0.38 tolerated(0.26) benign(0) TCGA-05-4250-01 15 52011673 52011673 C A SCG3 Missense_Mutation p.L453I 0.40 tolerated_low_confidence(0.28) probably_damaging(0.998) TCGA-05-4250-01 15 54786899 54786899 C T UNC13C Missense_Mutation p.P1676L 0.15 deleterious_low_confidence(0.03) benign(0.01) TCGA-05-4250-01 15 76994155 76994155 G A SCAPER Nonsense_Mutation p.Q818* 0.44 TCGA-05-4250-01 15 78635905 78635905 G T CRABP1 Missense_Mutation p.G105V 0.40 deleterious(0) probably_damaging(0.918) TCGA-05-4250-01 15 78921765 78921765 G A CHRNB4 Silent p.L294L 0.18 TCGA-05-4250-01 15 78921903 78921903 C A CHRNB4 Missense_Mutation p.L248F 0.16 tolerated(1) benign(0.442) TCGA-05-4250-01 15 82512058 82512058 C A EFTUD1 Missense_Mutation p.A516S 0.26 deleterious(0.01) possibly_damaging(0.471) TCGA-05-4250-01 15 85400144 85400144 G T ALPK3 Missense_Mutation p.E927D 0.20 deleterious_low_confidence(0.03) benign(0.009) TCGA-05-4250-01 15 88678594 88678594 C A NTRK3 Missense_Mutation p.E314D 0.23 tolerated(0.14) benign(0.131) TCGA-05-4250-01 15 91341467 91341468 - TT BLM Frame_Shift_Ins p.V1088Lfs*11 0.21 TCGA-05-4250-01 16 16345869 16345869 A G NOMO3 Missense_Mutation p.D262G 0.16 tolerated(0.43) benign(0.155) TCGA-05-4250-01 16 20944578 20944578 G A DNAH3 Silent p.G4083G 0.40 TCGA-05-4250-01 16 2258703 2258703 G T MLST8 Intron 0.34 TCGA-05-4250-01 16 239065 239065 G A LUC7L 3'UTR 0.19 TCGA-05-4250-01 16 30974843 30974843 A T SETD1A Nonsense_Mutation p.K203* 0.42 TCGA-05-4250-01 16 30974845 30974845 G T SETD1A Missense_Mutation p.K203N 0.45 possibly_damaging(0.603) TCGA-05-4250-01 16 31336931 31336931 G T ITGAM Silent p.P873P 0.31 TCGA-05-4250-01 16 31391695 31391695 C A ITGAX Missense_Mutation p.R1057S 0.43 tolerated(1) benign(0) TCGA-05-4250-01 16 3434572 3434572 G T ZSCAN32 Missense_Mutation p.T162K 0.18 tolerated(0.36) benign(0.031) TCGA-05-4250-01 16 3900576 3900576 C G CREBBP Missense_Mutation p.G174R 0.36 probably_damaging(0.973) TCGA-05-4250-01 16 53675021 53675021 C T RPGRIP1L Missense_Mutation p.R961K 0.11 tolerated(1) benign(0.001) TCGA-05-4250-01 16 65022079 65022079 C A CDH11 Missense_Mutation p.G327V 0.06 deleterious(0) possibly_damaging(0.783) TCGA-05-4250-01 16 67319226 67319226 G T PLEKHG4 Silent p.T743T 0.31 TCGA-05-4250-01 16 81187865 81187865 G T PKD1L2 RNA 0.21 TCGA-05-4250-01 16 81219212 81219212 G T PKD1L2 5'Flank 0.34 TCGA-05-4250-01 17 27041896 27041896 G C RAB34 Missense_Mutation p.F266L 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-05-4250-01 17 35993383 35993383 C G DDX52 Missense_Mutation p.D118H 0.12 tolerated(0.05) benign(0.149) TCGA-05-4250-01 17 38564376 38564376 C A TOP2A Missense_Mutation p.G448V 0.25 deleterious(0) probably_damaging(1) TCGA-05-4250-01 17 39521771 39521771 C T KRT33B Missense_Mutation p.R208H 0.12 deleterious(0.03) benign(0.262) TCGA-05-4250-01 17 3981186 3981186 T C ZZEF1 Missense_Mutation p.I994V 0.16 tolerated(0.07) benign(0.002) TCGA-05-4250-01 17 43005458 43005458 C A KIF18B Nonsense_Mutation p.E738* 0.09 TCGA-05-4250-01 17 4539076 4539076 G A ALOX15 Missense_Mutation p.P380L 0.32 deleterious(0) probably_damaging(1) TCGA-05-4250-01 17 56679776 56679776 C G TEX14 Silent p.L510L 0.13 TCGA-05-4250-01 17 60060325 60060325 C G MED13 Missense_Mutation p.R1013S 0.49 tolerated(0.69) probably_damaging(0.996) TCGA-05-4250-01 17 60348726 60348726 T - TBC1D3P2 RNA 0.31 TCGA-05-4250-01 17 61492904 61492904 G A TANC2 Missense_Mutation p.E1262K 0.05 deleterious(0) probably_damaging(0.992) TCGA-05-4250-01 17 63554793 63554793 C T AXIN2 5'UTR 0.22 TCGA-05-4250-01 17 66918397 66918397 A G ABCA8 Missense_Mutation p.I496T 0.22 tolerated(0.49) benign(0.009) TCGA-05-4250-01 17 72345451 72345451 G T KIF19 Silent p.R392R 0.58 TCGA-05-4250-01 17 72345452 72345452 G T KIF19 Missense_Mutation p.G393C 0.58 deleterious(0.03) possibly_damaging(0.469) TCGA-05-4250-01 17 72522108 72522108 C T CD300LB Missense_Mutation p.C87Y 0.49 deleterious(0) probably_damaging(0.999) TCGA-05-4250-01 17 72915586 72915586 C A USH1G Missense_Mutation p.A449S 0.49 deleterious(0.02) benign(0.05) TCGA-05-4250-01 17 73498744 73498744 G A CASKIN2 Missense_Mutation p.P804L 0.26 tolerated(0.58) possibly_damaging(0.768) TCGA-05-4250-01 17 78162253 78162253 G C CARD14 Silent p.L251L 0.11 TCGA-05-4250-01 17 79219674 79219674 C T SLC38A10 Silent p.Q1014Q 0.03 TCGA-05-4250-01 17 8048275 8048275 G C PER1 Missense_Mutation p.P752R 0.47 tolerated(0.16) benign(0.019) TCGA-05-4250-01 17 9760757 9760757 G T GLP2R Missense_Mutation p.R210L 0.37 deleterious(0) probably_damaging(1) TCGA-05-4250-01 18 13825793 13825793 T C MC5R Missense_Mutation p.L10S 0.45 tolerated(0.15) benign(0.009) TCGA-05-4250-01 18 19997171 19997171 A G CTAGE1 Missense_Mutation p.W202R 0.41 deleterious(0.05) benign(0.209) TCGA-05-4250-01 18 30806766 30806766 C A CCDC178 Missense_Mutation p.M549I 0.45 tolerated(0.37) benign(0.012) TCGA-05-4250-01 18 31323007 31323007 G T ASXL3 Silent p.R1065R 0.50 TCGA-05-4250-01 18 44036010 44036010 G T RNF165 Missense_Mutation p.C297F 0.70 deleterious(0) probably_damaging(0.999) TCGA-05-4250-01 18 61323207 61323207 C G SERPINB3 Missense_Mutation p.R286P 0.43 deleterious(0) probably_damaging(0.996) TCGA-05-4250-01 18 77894782 77894782 C T ADNP2 Missense_Mutation p.R496W 0.29 deleterious(0.02) possibly_damaging(0.862) TCGA-05-4250-01 19 14866492 14866492 G A EMR2 Missense_Mutation p.P464S 0.18 tolerated(0.05) benign(0.057) TCGA-05-4250-01 19 15839102 15839102 C T OR10H2 Silent p.A83A 0.16 TCGA-05-4250-01 19 15918599 15918599 G A OR10H1 Silent p.A83A 0.23 TCGA-05-4250-01 19 19338712 19338712 C T NCAN Silent p.F761F 0.48 TCGA-05-4250-01 19 30935348 30935348 C T ZNF536 Silent p.I293I 0.49 TCGA-05-4250-01 19 33078020 33078020 C T PDCD5 Intron 0.25 TCGA-05-4250-01 19 35231824 35231824 G - ZNF181 Frame_Shift_Del p.N181Ifs*8 0.44 TCGA-05-4250-01 19 35660493 35660493 G T FXYD5 Missense_Mutation p.R171L 0.57 deleterious(0.02) benign(0.075) TCGA-05-4250-01 19 36228979 36228979 C T KMT2B Nonsense_Mutation p.R2587* 0.13 TCGA-05-4250-01 19 39915830 39915830 A G PLEKHG2 Missense_Mutation p.K1353E 0.17 deleterious_low_confidence(0) possibly_damaging(0.773) TCGA-05-4250-01 19 40368402 40368402 C G FCGBP Missense_Mutation p.G4316R 0.06 probably_damaging(0.997) TCGA-05-4250-01 19 41019339 41019339 C T SPTBN4 Silent p.L881L 0.60 TCGA-05-4250-01 19 42930740 42930740 T C LIPE Missense_Mutation p.T188A 0.59 tolerated_low_confidence(0.17) benign(0.057) TCGA-05-4250-01 19 43026327 43026327 C A CEACAM1 Missense_Mutation p.S151I 0.13 tolerated(0.11) benign(0.097) TCGA-05-4250-01 19 43430163 43430163 G C PSG7 Silent p.P335P 0.54 TCGA-05-4250-01 19 43679379 43679379 C A PSG5 Missense_Mutation p.V318F 0.55 deleterious(0) probably_damaging(0.97) TCGA-05-4250-01 19 44636444 44636444 G C ZNF225 Missense_Mutation p.Q559H 0.09 tolerated(0.09) probably_damaging(0.998) TCGA-05-4250-01 19 49131871 49131871 C T SPHK2 Intron 0.16 TCGA-05-4250-01 19 50102993 50102993 C T PRR12 Silent p.S1381S 0.23 TCGA-05-4250-01 19 51582093 51582093 C A KLK14 Missense_Mutation p.Q210H 0.22 deleterious(0) possibly_damaging(0.796) TCGA-05-4250-01 19 52856949 52856949 C T ZNF610 Silent p.F26F 0.20 TCGA-05-4250-01 19 53792981 53792981 G T BIRC8 Missense_Mutation p.A216E 0.22 deleterious(0.02) benign(0.248) TCGA-05-4250-01 19 5456195 5456195 G T ZNRF4 Silent p.S231S 0.53 TCGA-05-4250-01 19 55237752 55237752 T A KIR3DL3 Missense_Mutation p.S102T 0.36 tolerated(0.12) benign(0.162) TCGA-05-4250-01 19 56539809 56539809 G T NLRP5 Missense_Mutation p.R737L 0.23 deleterious(0) probably_damaging(0.919) TCGA-05-4250-01 19 56565064 56565064 G A NLRP5 Silent p.R1063R 0.23 TCGA-05-4250-01 19 57647096 57647096 T C ZIM3 Silent p.A203A 0.22 TCGA-05-4250-01 19 58153284 58153284 G T ZNF211 Missense_Mutation p.G542V 0.17 deleterious(0) probably_damaging(0.985) TCGA-05-4250-01 19 58967524 58967524 G C ZNF324B Missense_Mutation p.A405P 0.21 deleterious(0) probably_damaging(0.998) TCGA-05-4250-01 19 6692982 6692982 C G C3 Missense_Mutation p.D1115H 0.52 deleterious(0) probably_damaging(0.973) TCGA-05-4250-01 19 8808680 8808680 G T ACTL9 Silent p.A124A 0.49 TCGA-05-4250-01 19 9056608 9056608 G C MUC16 Missense_Mutation p.P10280A 0.51 benign(0.003) TCGA-05-4250-01 1 101198093 101198093 C A VCAM1 Missense_Mutation p.Q549K 0.35 tolerated(0.6) benign(0.02) TCGA-05-4250-01 1 10364334 10364334 A T KIF1B Intron 0.25 TCGA-05-4250-01 1 11345877 11345877 G A UBIAD1 Missense_Mutation p.D236N 0.24 deleterious(0) probably_damaging(1) TCGA-05-4250-01 1 117504037 117504037 G T PTGFRN Missense_Mutation p.E462D 0.25 tolerated(0.12) possibly_damaging(0.822) TCGA-05-4250-01 1 12921641 12921641 C A PRAMEF2 3'UTR 0.17 TCGA-05-4250-01 1 146672938 146672938 T A FMO5 Missense_Mutation p.I327F 0.50 deleterious(0.03) benign(0.12) TCGA-05-4250-01 1 146680354 146680354 G A FMO5 Intron 0.11 TCGA-05-4250-01 1 151743591 151743591 G A OAZ3 Missense_Mutation p.V157M 0.33 tolerated(0.17) possibly_damaging(0.495) TCGA-05-4250-01 1 152192787 152192787 C A HRNR Missense_Mutation p.G440C 0.32 unknown(0) TCGA-05-4250-01 1 152382438 152382438 G T CRNN Missense_Mutation p.Q374K 0.14 tolerated(0.58) benign(0.017) TCGA-05-4250-01 1 152487955 152487955 G T CRCT1 Silent p.A32A 0.54 TCGA-05-4250-01 1 153789863 153789863 G A GATAD2B Silent p.A295A 0.17 TCGA-05-4250-01 1 156214029 156214029 T - PAQR6 Frame_Shift_Del p.T227Pfs*41 0.26 TCGA-05-4250-01 1 157660199 157660199 G C FCRL3 Missense_Mutation p.H512Q 0.41 tolerated(0.06) probably_damaging(0.985) TCGA-05-4250-01 1 158596791 158596791 G A SPTA1 Nonsense_Mutation p.Q1891* 0.27 TCGA-05-4250-01 1 161069916 161069916 C T KLHDC9 Missense_Mutation p.R318C 0.17 tolerated(0.06) probably_damaging(0.98) TCGA-05-4250-01 1 162372583 162372583 A G SH2D1B Silent p.N48N 0.15 TCGA-05-4250-01 1 167815391 167815391 G A ADCY10 Missense_Mutation p.P850S 0.14 deleterious(0) possibly_damaging(0.847) TCGA-05-4250-01 1 171250010 171250010 G C FMO1 Missense_Mutation p.R238P 0.45 deleterious(0) probably_damaging(0.998) TCGA-05-4250-01 1 175292368 175292368 C G TNR 3'UTR 0.21 TCGA-05-4250-01 1 177250490 177250490 G T BRINP2 Silent p.R726R 0.14 TCGA-05-4250-01 1 178442407 178442407 A G RASAL2 3'UTR 0.17 TCGA-05-4250-01 1 185267224 185267241 TTCCACCGTATTCAGAAA - IVNS1ABP In_Frame_Del p.F619_E624del 0.14 TCGA-05-4250-01 1 18809215 18809215 G T KLHDC7A Silent p.P580P 0.30 TCGA-05-4250-01 1 190067753 190067753 C A BRINP3 Nonsense_Mutation p.E566* 0.19 TCGA-05-4250-01 1 190067754 190067754 C A BRINP3 Missense_Mutation p.L565F 0.19 deleterious(0.04) probably_damaging(0.997) TCGA-05-4250-01 1 19505708 19505708 G C UBR4 Missense_Mutation p.L731V 0.23 probably_damaging(0.96) TCGA-05-4250-01 1 202287785 202287785 T A LGR6 Missense_Mutation p.L785H 0.56 deleterious(0) probably_damaging(1) TCGA-05-4250-01 1 204380143 204380143 C A PPP1R15B Missense_Mutation p.D133Y 0.26 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-05-4250-01 1 204403679 204403679 C A PIK3C2B Missense_Mutation p.G1192C 0.09 deleterious(0) probably_damaging(1) TCGA-05-4250-01 1 205033534 205033534 C A CNTN2 Missense_Mutation p.P442H 0.33 deleterious(0) probably_damaging(0.992) TCGA-05-4250-01 1 207287595 207287595 C A C4BPA Missense_Mutation p.S98Y 0.19 tolerated(0.09) benign(0.09) TCGA-05-4250-01 1 210637891 210637891 A T HHAT Missense_Mutation p.Y301F 0.12 deleterious(0) probably_damaging(0.996) TCGA-05-4250-01 1 211836943 211836943 C T NEK2 Missense_Mutation p.G388E 0.09 tolerated_low_confidence(0.1) benign(0.185) TCGA-05-4250-01 1 215847654 215847654 T C USH2A Silent p.S4533S 0.13 TCGA-05-4250-01 1 216219877 216219877 G C USH2A Missense_Mutation p.S2074C 0.10 possibly_damaging(0.765) TCGA-05-4250-01 1 216420112 216420112 G T USH2A Missense_Mutation p.T875K 0.25 possibly_damaging(0.507) TCGA-05-4250-01 1 22159808 22159808 T G HSPG2 Missense_Mutation p.Y3683S 0.22 probably_damaging(0.954) TCGA-05-4250-01 1 223396808 223396808 C G SUSD4 Missense_Mutation p.Q409H 0.26 deleterious(0.01) possibly_damaging(0.646) TCGA-05-4250-01 1 224927216 224927216 G T CNIH3 3'UTR 0.63 TCGA-05-4250-01 1 228462074 228462074 G A OBSCN Missense_Mutation p.R2246H 0.12 probably_damaging(0.998) TCGA-05-4250-01 1 229738448 229738448 G A TAF5L Nonsense_Mutation p.R156* 0.30 TCGA-05-4250-01 1 236176844 236176844 G T NID1 Silent p.R757R 0.34 TCGA-05-4250-01 1 236746143 236746143 T C HEATR1 Missense_Mutation p.K819E 0.50 tolerated(0.63) benign(0.001) TCGA-05-4250-01 1 236925911 236925911 G T ACTN2 Missense_Mutation p.D893Y 0.47 deleterious(0) probably_damaging(0.997) TCGA-05-4250-01 1 240656560 240656560 C G GREM2 Missense_Mutation p.W72C 0.16 deleterious(0) probably_damaging(1) TCGA-05-4250-01 1 241262063 241262063 C T RGS7 Splice_Site p.X27_splice 0.28 TCGA-05-4250-01 1 247063503 247063503 T A AHCTF1 Silent p.S441S 0.28 TCGA-05-4250-01 1 247769603 247769603 G T OR2G3 Missense_Mutation p.S239I 0.54 deleterious(0) possibly_damaging(0.74) TCGA-05-4250-01 1 247875300 247875300 C A OR6F1 Missense_Mutation p.G253V 0.27 deleterious(0.02) possibly_damaging(0.77) TCGA-05-4250-01 1 247875301 247875301 C A OR6F1 Missense_Mutation p.G253W 0.27 deleterious(0) probably_damaging(0.999) TCGA-05-4250-01 1 248224140 248224140 C A OR2L3 Missense_Mutation p.H53N 0.36 deleterious(0.01) benign(0.012) TCGA-05-4250-01 1 248366751 248366751 C G OR2M3 Missense_Mutation p.H128D 0.16 deleterious(0.01) benign(0.288) TCGA-05-4250-01 1 248636780 248636780 C A OR2T3 Silent p.A43A 0.29 TCGA-05-4250-01 1 26663852 26663852 C A AIM1L Missense_Mutation p.K347N 0.23 deleterious(0) probably_damaging(0.999) TCGA-05-4250-01 1 32163665 32163665 G T COL16A1 Missense_Mutation p.R167S 0.27 unknown(0) TCGA-05-4250-01 1 35260118 35260118 C A GJA4 Silent p.R102R 0.30 TCGA-05-4250-01 1 43908192 43908192 A T SZT2 Missense_Mutation p.Q2628L 0.21 tolerated(1) probably_damaging(0.99) TCGA-05-4250-01 1 47075248 47075248 A T MOB3C 3'UTR 0.08 TCGA-05-4250-01 1 53245579 53245579 G C ZYG11B Missense_Mutation p.E336Q 0.25 tolerated(0.09) possibly_damaging(0.698) TCGA-05-4250-01 1 55598341 55598341 G A USP24 Silent p.S1138S 0.28 TCGA-05-4250-01 1 67795269 67795269 G T IL12RB2 Splice_Site p.X222_splice 0.19 TCGA-05-4250-01 1 67861719 67861719 G C IL12RB2 Missense_Mutation p.D846H 0.25 deleterious(0.03) benign(0.401) TCGA-05-4250-01 1 70899568 70899568 G T CTH Missense_Mutation p.G312V 0.17 deleterious(0) probably_damaging(0.998) TCGA-05-4250-01 1 79358799 79358799 A C ELTD1 Missense_Mutation p.C609G 0.15 tolerated(0.66) probably_damaging(0.967) TCGA-05-4250-01 1 84610229 84610229 C G PRKACB Nonsense_Mutation p.S62* 0.15 TCGA-05-4250-01 1 957682 957682 C T AGRN Silent p.L101L 0.24 TCGA-05-4250-01 20 19665960 19665960 G A SLC24A3 Missense_Mutation p.D427N 0.60 tolerated(0.26) benign(0.063) TCGA-05-4250-01 20 23584184 23584184 G T CST9 Missense_Mutation p.A148E 0.66 deleterious_low_confidence(0.01) benign(0.035) TCGA-05-4250-01 20 257517 257517 T A C20orf96 Missense_Mutation p.T277S 0.56 tolerated(0.25) benign(0.161) TCGA-05-4250-01 20 32265061 32265061 T C E2F1 Missense_Mutation p.I306V 0.12 tolerated(0.13) benign(0.002) TCGA-05-4250-01 20 36322449 36322449 G T CTNNBL1 5'UTR 0.57 TCGA-05-4250-01 20 36611948 36611948 G C TTI1 Silent p.P1060P 0.43 TCGA-05-4250-01 20 36937430 36937430 G T BPI Missense_Mutation p.S119I 0.65 tolerated(0.06) benign(0.434) TCGA-05-4250-01 20 37076785 37076785 G C SNHG11 Intron 0.26 TCGA-05-4250-01 20 391276 391276 C T RBCK1 Intron 0.08 TCGA-05-4250-01 20 43150551 43150551 C T SERINC3 Intron 0.49 TCGA-05-4250-01 20 46318884 46318884 G T SULF2 Missense_Mutation p.N241K 0.60 deleterious(0) probably_damaging(0.96) TCGA-05-4250-01 20 53205280 53205280 G T DOK5 Missense_Mutation p.R115L 0.44 tolerated(0.06) benign(0.05) TCGA-05-4250-01 20 56138620 56138620 G T PCK1 Splice_Site p.X267_splice 0.34 TCGA-05-4250-01 20 57268829 57268829 C T NPEPL1 Missense_Mutation p.P63S 0.05 tolerated(0.15) benign(0.298) TCGA-05-4250-01 20 60791983 60791983 C A HRH3 Splice_Site p.X140_splice 0.65 TCGA-05-4250-01 20 60906119 60906119 T A LAMA5 Missense_Mutation p.I1207F 0.52 probably_damaging(0.943) TCGA-05-4250-01 20 62174736 62174736 C T SRMS Silent p.E192E 0.31 TCGA-05-4250-01 21 31797799 31797799 G T KRTAP13-3 Silent p.S144S 0.12 TCGA-05-4250-01 21 47412102 47412102 C T COL6A1 Missense_Mutation p.P403S 0.49 tolerated(0.33) unknown(0) TCGA-05-4250-01 21 47969892 47969892 G T DIP2A Intron 0.27 TCGA-05-4250-01 22 17308477 17308477 C T HSFY1P1 RNA 0.24 TCGA-05-4250-01 22 22890696 22890696 A G PRAME Silent p.Y441Y 0.49 TCGA-05-4250-01 22 24129426 24129426 G C SMARCB1 Missense_Mutation p.E24Q 0.21 deleterious(0.01) benign(0.141) TCGA-05-4250-01 22 25755958 25755958 G A LRP5L Silent p.N34N 0.18 TCGA-05-4250-01 22 30977532 30977532 G A PES1 Missense_Mutation p.L244F 0.55 deleterious(0) probably_damaging(0.995) TCGA-05-4250-01 22 35743195 35743195 C T TOM1 Missense_Mutation p.A492V 0.48 deleterious(0) possibly_damaging(0.831) TCGA-05-4250-01 22 38878654 38878654 T - KDELR3 3'Flank 0.58 TCGA-05-4250-01 22 39710735 39710735 C A RPL3 Missense_Mutation p.A269S 0.44 tolerated(0.07) benign(0.379) TCGA-05-4250-01 2 103353306 103353306 G A MFSD9 5'UTR 0.71 TCGA-05-4250-01 2 17696555 17696555 C A RAD51AP2 Missense_Mutation p.S1043I 0.74 tolerated(0.08) benign(0.178) TCGA-05-4250-01 2 179306402 179306402 T A PRKRA Missense_Mutation p.R182W 0.04 deleterious(0) probably_damaging(0.999) TCGA-05-4250-01 2 186671025 186671025 G T FSIP2 Silent p.T5753T 0.72 TCGA-05-4250-01 2 18770803 18770803 T G NT5C1B 5'UTR 0.10 TCGA-05-4250-01 2 220077768 220077768 C G ABCB6 Missense_Mutation p.V609L 0.45 tolerated(0.07) benign(0.056) TCGA-05-4250-01 2 234652186 234652186 G A UGT1A10 Intron 0.16 TCGA-05-4250-01 2 239056488 239056488 C T KLHL30 Silent p.D388D 0.10 TCGA-05-4250-01 2 241661247 241661247 A T KIF1A Missense_Mutation p.C1574S 0.79 tolerated(0.37) benign(0.042) TCGA-05-4250-01 2 26707430 26707430 C A OTOF Missense_Mutation p.V373L 0.59 tolerated(1) benign(0.092) TCGA-05-4250-01 2 27440873 27440873 G C CAD Missense_Mutation p.G71R 0.26 deleterious(0.01) probably_damaging(0.928) TCGA-05-4250-01 2 27822533 27822533 C A ZNF512 Missense_Mutation p.H121N 0.63 tolerated(0.1) probably_damaging(0.968) TCGA-05-4250-01 2 38542443 38542443 C T ATL2 Missense_Mutation p.D213N 0.26 deleterious(0.05) possibly_damaging(0.746) TCGA-05-4250-01 2 80782968 80782968 G T CTNNA2 Missense_Mutation p.G564V 0.61 deleterious(0) possibly_damaging(0.55) TCGA-05-4250-01 2 87073827 87073827 C A CD8B Missense_Mutation p.G188V 0.74 tolerated(0.22) probably_damaging(0.919) TCGA-05-4250-01 2 88387418 88387418 G T SMYD1 Missense_Mutation p.G118C 0.61 deleterious(0.01) probably_damaging(0.972) TCGA-05-4250-01 2 89513152 89513152 G A IGKV1-27 Missense_Mutation p.S36F 0.43 deleterious(0.02) possibly_damaging(0.628) TCGA-05-4250-01 2 89568034 89568034 C G IGKV1-33 Missense_Mutation p.Q25H 0.08 deleterious(0.05) possibly_damaging(0.84) TCGA-05-4250-01 2 9666321 9666321 C A ADAM17 Silent p.T224T 0.64 TCGA-05-4250-01 3 110852594 110852594 G A PVRL3 Silent p.L394L 0.25 TCGA-05-4250-01 3 112299982 112299982 A G SLC35A5 Missense_Mutation p.T340A 0.17 deleterious(0.01) probably_damaging(0.995) TCGA-05-4250-01 3 118865982 118865982 G A C3orf30 Missense_Mutation p.E316K 0.06 tolerated(0.93) benign(0.115) TCGA-05-4250-01 3 125694456 125694456 C A ROPN1B Missense_Mutation p.S56Y 0.15 tolerated(0.41) possibly_damaging(0.807) TCGA-05-4250-01 3 126751397 126751397 T A PLXNA1 Missense_Mutation p.L1800Q 0.41 deleterious(0) probably_damaging(1) TCGA-05-4250-01 3 128200779 128200779 G A GATA2 Silent p.A342A 0.16 TCGA-05-4250-01 3 139280150 139280150 T C NMNAT3 Missense_Mutation p.Q117R 0.15 tolerated(0.12) benign(0.05) TCGA-05-4250-01 3 14106924 14106924 C A TPRXL 3'UTR 0.56 TCGA-05-4250-01 3 147128524 147128524 G T ZIC1 Missense_Mutation p.G209C 0.11 deleterious(0) probably_damaging(0.996) TCGA-05-4250-01 3 149459216 149459216 C A COMMD2 3'UTR 0.38 TCGA-05-4250-01 3 154145355 154145355 A G GPR149 Missense_Mutation p.I375T 0.61 deleterious(0) benign(0.309) TCGA-05-4250-01 3 156009595 156009595 G C KCNAB1 Intron 0.15 TCGA-05-4250-01 3 184104849 184104849 T C CHRD Silent p.D767D 0.17 TCGA-05-4250-01 3 196281560 196281560 G T WDR53 Missense_Mutation p.A200D 0.33 deleterious(0.01) possibly_damaging(0.804) TCGA-05-4250-01 3 196612172 196612172 G T SENP5 Silent p.L40L 0.26 TCGA-05-4250-01 3 45943393 45943393 G A CCR9 3'UTR 0.16 TCGA-05-4250-01 3 46008032 46008032 C G FYCO1 Missense_Mutation p.E932Q 0.17 tolerated(0.07) possibly_damaging(0.642) TCGA-05-4250-01 3 48215895 48215895 C G CDC25A Missense_Mutation p.R270P 0.31 deleterious(0.01) benign(0.134) TCGA-05-4250-01 3 48699962 48699962 C T CELSR3 Missense_Mutation p.G36S 0.15 tolerated_low_confidence(0.14) benign(0.001) TCGA-05-4250-01 3 49160160 49160160 T G LAMB2 Missense_Mutation p.Q1517P 0.23 deleterious(0.01) possibly_damaging(0.63) TCGA-05-4250-01 3 49161963 49161963 C A LAMB2 Missense_Mutation p.Q1064H 0.28 deleterious(0.05) probably_damaging(1) TCGA-05-4250-01 3 56680580 56680580 T C FAM208A Missense_Mutation p.N729D 0.38 tolerated(0.68) benign(0.001) TCGA-05-4250-01 3 86114787 86114787 G C CADM2 Missense_Mutation p.D368H 0.18 deleterious(0) probably_damaging(0.994) TCGA-05-4250-01 3 98251438 98251438 G T GPR15 Missense_Mutation p.K187N 0.24 tolerated(0.49) benign(0.122) TCGA-05-4250-01 4 107956632 107956632 C A DKK2 Missense_Mutation p.K39N 0.30 deleterious(0.01) probably_damaging(0.95) TCGA-05-4250-01 4 119666152 119666152 C A SEC24D Missense_Mutation p.G591W 0.17 deleterious(0) probably_damaging(1) TCGA-05-4250-01 4 120107204 120107205 - A MYOZ2 Frame_Shift_Ins p.D216Rfs*18 0.15 TCGA-05-4250-01 4 144469215 144469215 T C SMARCA5 Silent p.V969V 0.15 TCGA-05-4250-01 4 146617753 146617753 G A C4orf51 Nonsense_Mutation p.W92* 0.37 TCGA-05-4250-01 4 159567946 159567946 C A RXFP1 Missense_Mutation p.A450D 0.18 deleterious(0) probably_damaging(0.998) TCGA-05-4250-01 4 169433085 169433085 G C PALLD Missense_Mutation p.G144R 0.41 tolerated(0.13) benign(0.209) TCGA-05-4250-01 4 169589482 169589482 C G PALLD Missense_Mutation p.S350R 0.12 tolerated(0.28) benign(0.361) TCGA-05-4250-01 4 1737014 1737014 G A TACC3 Missense_Mutation p.A536T 0.14 tolerated(0.09) benign(0.107) TCGA-05-4250-01 4 177609075 177609075 C A VEGFC Missense_Mutation p.Q237H 0.31 tolerated(0.73) benign(0.004) TCGA-05-4250-01 4 185705088 185705088 T C ACSL1 Missense_Mutation p.Y123C 0.40 deleterious(0) probably_damaging(1) TCGA-05-4250-01 4 190881940 190881940 A T FRG1 Missense_Mutation p.D192V 0.12 deleterious(0.04) benign(0.285) TCGA-05-4250-01 4 25334902 25334902 C A ZCCHC4 Missense_Mutation p.H143N 0.32 deleterious(0) benign(0.403) TCGA-05-4250-01 4 2934882 2934882 C A MFSD10 Missense_Mutation p.G108V 0.21 deleterious(0) probably_damaging(1) TCGA-05-4250-01 4 40127837 40127837 T G N4BP2 Missense_Mutation p.L1472V 0.14 tolerated(0.61) possibly_damaging(0.622) TCGA-05-4250-01 4 47453593 47453593 C T COMMD8 3'UTR 0.31 TCGA-05-4250-01 4 527726 527726 G T PIGG Silent p.L897L 0.35 TCGA-05-4250-01 4 59391 59391 C A ZNF595 Silent p.A24A 0.06 TCGA-05-4250-01 4 6042384 6042384 G A JAKMIP1 Silent p.A719A 0.25 TCGA-05-4250-01 4 68527971 68527971 C A UBA6 Missense_Mutation p.C347F 0.15 deleterious(0.03) benign(0.034) TCGA-05-4250-01 4 71024063 71024063 C - C4orf40 Frame_Shift_Del p.H32Tfs*7 0.22 TCGA-05-4250-01 4 74349697 74349697 T C AFM Missense_Mutation p.I43T 0.50 tolerated(0.5) benign(0.005) TCGA-05-4250-01 4 90743427 90743427 A T SNCA Silent p.T92T 0.21 TCGA-05-4250-01 5 102537262 102537262 C T PPIP5K2 Missense_Mutation p.S1199L 0.25 deleterious_low_confidence(0) benign(0.033) TCGA-05-4250-01 5 112878169 112878169 C G YTHDC2 Silent p.V488V 0.16 TCGA-05-4250-01 5 127627259 127627259 G - FBN2 Frame_Shift_Del p.P2085Lfs*164 0.17 TCGA-05-4250-01 5 127800414 127800414 C - FBN2 Intron 0.36 TCGA-05-4250-01 5 131545977 131545977 C A P4HA2 Missense_Mutation p.D237Y 0.39 tolerated(0.4) possibly_damaging(0.642) TCGA-05-4250-01 5 134223691 134223691 G A TXNDC15 Missense_Mutation p.G137E 0.24 tolerated(0.34) benign(0.02) TCGA-05-4250-01 5 140175812 140175812 T C PCDHA2 Silent p.Y421Y 0.17 TCGA-05-4250-01 5 140308810 140308810 C - PCDHAC1 Frame_Shift_Del p.D779Tfs*9 0.25 TCGA-05-4250-01 5 140744565 140744565 C A PCDHGA5 Missense_Mutation p.S223Y 0.17 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-05-4250-01 5 140865302 140865302 G A PCDHGC4 Missense_Mutation p.G188S 0.22 deleterious(0.01) possibly_damaging(0.903) TCGA-05-4250-01 5 142437235 142437235 T A ARHGAP26 Silent p.S487S 0.37 TCGA-05-4250-01 5 148406292 148406292 G A SH3TC2 Missense_Mutation p.L966F 0.40 deleterious(0.01) probably_damaging(0.984) TCGA-05-4250-01 5 149216513 149216513 C G PPARGC1B Missense_Mutation p.S832C 0.37 tolerated(0.21) benign(0.033) TCGA-05-4250-01 5 149449494 149449494 C T CSF1R Silent p.E484E 0.30 TCGA-05-4250-01 5 154191175 154191175 G A LARP1 Missense_Mutation p.R942Q 0.19 deleterious(0.03) benign(0.422) TCGA-05-4250-01 5 156186311 156186311 C G SGCD Missense_Mutation p.F261L 0.35 deleterious(0) benign(0.053) TCGA-05-4250-01 5 175530279 175530279 G A FAM153B Silent p.E161E 0.08 TCGA-05-4250-01 5 175530280 175530280 G T FAM153B Nonsense_Mutation p.E162* 0.08 TCGA-05-4250-01 5 33546268 33546268 C A ADAMTS12 Missense_Mutation p.V1448L 0.49 deleterious(0) possibly_damaging(0.658) TCGA-05-4250-01 5 35876564 35876564 G T IL7R Missense_Mutation p.M452I 0.45 deleterious(0) probably_damaging(0.999) TCGA-05-4250-01 5 36961594 36961594 A G NIPBL Missense_Mutation p.M123V 0.12 tolerated(0.67) benign(0.001) TCGA-05-4250-01 5 54429307 54429307 A G CDC20B Silent p.G210G 0.33 TCGA-05-4250-01 5 5463461 5463461 G A KIAA0947 Silent p.Q1338Q 0.27 TCGA-05-4250-01 5 56177585 56177585 G T MAP3K1 Missense_Mutation p.R853L 0.16 tolerated(0.06) benign(0.221) TCGA-05-4250-01 5 70759928 70759928 C G BDP1 Missense_Mutation p.P215A 0.22 tolerated(0.2) possibly_damaging(0.834) TCGA-05-4250-01 5 70931014 70931014 G T MCCC2 Missense_Mutation p.A314S 0.16 tolerated_low_confidence(0.35) benign(0.033) TCGA-05-4250-01 5 79950397 79950397 C G DHFR 5'UTR 0.25 TCGA-05-4250-01 5 93856111 93856111 A G KIAA0825 Missense_Mutation p.M271T 0.57 tolerated(1) benign(0) TCGA-05-4250-01 5 94903741 94903741 A T ARSK Missense_Mutation p.H135L 0.12 tolerated(0.08) possibly_damaging(0.719) TCGA-05-4250-01 6 158014043 158014043 G T ZDHHC14 Missense_Mutation p.G144W 0.32 deleterious(0.01) possibly_damaging(0.886) TCGA-05-4250-01 6 18399744 18399744 G A RNF144B 5'UTR 0.16 TCGA-05-4250-01 6 20113163 20113163 G A MBOAT1 Missense_Mutation p.P385S 0.13 deleterious(0) probably_damaging(0.99) TCGA-05-4250-01 6 27100922 27100922 C G HIST1H2AG Silent p.L24L 0.32 TCGA-05-4250-01 6 30072985 30072985 G C TRIM31 Missense_Mutation p.N306K 0.19 deleterious(0.01) benign(0.026) TCGA-05-4250-01 6 30860208 30860208 A G DDR1 Missense_Mutation p.R330G 0.33 deleterious(0.02) benign(0.205) TCGA-05-4250-01 6 32018012 32018012 C A TNXB 5'Flank 0.16 TCGA-05-4250-01 6 32178643 32178643 G T NOTCH4 Missense_Mutation p.H917Q 0.13 tolerated(0.55) benign(0.02) TCGA-05-4250-01 6 32188208 32188208 G C NOTCH4 Missense_Mutation p.S378C 0.22 deleterious(0.02) possibly_damaging(0.823) TCGA-05-4250-01 6 35773816 35773816 G T LHFPL5 Silent p.T123T 0.41 TCGA-05-4250-01 6 41162312 41162312 G T TREML2 Silent p.T212T 0.13 TCGA-05-4250-01 6 42211039 42211039 G A TRERF1 Missense_Mutation p.R936W 0.17 deleterious(0) possibly_damaging(0.689) TCGA-05-4250-01 6 44141031 44141031 C A CAPN11 Missense_Mutation p.Q247K 0.43 deleterious(0) benign(0.023) TCGA-05-4250-01 6 46644292 46644292 C G SLC25A27 3'UTR 0.30 TCGA-05-4250-01 6 53378980 53378980 C G GCLC Intron 0.29 TCGA-05-4250-01 6 57015521 57015521 A T ZNF451 Missense_Mutation p.E871D 0.39 tolerated_low_confidence(0.17) probably_damaging(0.99) TCGA-05-4250-01 6 96034364 96034364 C A MANEA Missense_Mutation p.L17I 0.46 deleterious(0.01) possibly_damaging(0.535) TCGA-05-4250-01 7 101267537 101267539 CTC - MYL10 In_Frame_Del p.R30del 0.23 TCGA-05-4250-01 7 104702637 104702637 T C KMT2E Missense_Mutation p.V33A 0.40 tolerated(0.28) unknown(0) TCGA-05-4250-01 7 112407532 112407532 C A TMEM168 Missense_Mutation p.W605L 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-05-4250-01 7 127251682 127251682 G A PAX4 Silent p.L266L 0.29 TCGA-05-4250-01 7 139611091 139611091 G A TBXAS1 Missense_Mutation p.E103K 0.14 tolerated(0.77) benign(0.023) TCGA-05-4250-01 7 142247339 142247339 C A TRBV7-3 Missense_Mutation p.E39D 0.21 TCGA-05-4250-01 7 142247527 142247527 G A TRBV7-3 Silent p.L13L 0.29 TCGA-05-4250-01 7 142494273 142494273 G T TRBJ2-2 Missense_Mutation p.G11C 0.27 unknown(0) TCGA-05-4250-01 7 142569271 142569271 G A TRPV6 3'UTR 0.44 TCGA-05-4250-01 7 142651458 142651458 A G KEL Missense_Mutation p.I246T 0.15 deleterious(0) possibly_damaging(0.466) TCGA-05-4250-01 7 143771552 143771552 G A OR2A25 Missense_Mutation p.M80I 0.31 deleterious(0.04) benign(0.291) TCGA-05-4250-01 7 143792957 143792957 A G OR2A12 Missense_Mutation p.S253G 0.10 tolerated(0.18) benign(0.114) TCGA-05-4250-01 7 148481087 148481087 A C CUL1 Missense_Mutation p.N406H 0.34 deleterious(0) probably_damaging(1) TCGA-05-4250-01 7 150553664 150553664 C A AOC1 Missense_Mutation p.L36I 0.25 deleterious(0) probably_damaging(1) TCGA-05-4250-01 7 151164231 151164231 C A RHEB Missense_Mutation p.G177C 0.12 deleterious(0.02) possibly_damaging(0.469) TCGA-05-4250-01 7 156742967 156742967 A G NOM1 Missense_Mutation p.N179S 0.24 deleterious(0) benign(0.027) TCGA-05-4250-01 7 158695181 158695181 G A WDR60 Missense_Mutation p.E418K 0.31 deleterious(0) possibly_damaging(0.636) TCGA-05-4250-01 7 16745717 16745717 G T BZW2 3'UTR 0.20 TCGA-05-4250-01 7 18869084 18869084 G T HDAC9 Missense_Mutation p.M793I 0.27 deleterious(0.04) probably_damaging(0.927) TCGA-05-4250-01 7 18869085 18869085 G T HDAC9 Missense_Mutation p.G794W 0.27 deleterious(0) probably_damaging(1) TCGA-05-4250-01 7 20782645 20782645 G C ABCB5 Missense_Mutation p.S1057T 0.32 deleterious(0) probably_damaging(0.959) TCGA-05-4250-01 7 2959040 2959040 C A CARD11 Missense_Mutation p.D826Y 0.34 deleterious(0) possibly_damaging(0.761) TCGA-05-4250-01 7 38288904 38288904 T A TRGC2 Nonsense_Mutation p.R91* 0.32 TCGA-05-4250-01 7 40900032 40900032 G T SUGCT Missense_Mutation p.G457V 0.28 tolerated(0.26) benign(0.043) TCGA-05-4250-01 7 42006017 42006017 C A GLI3 Missense_Mutation p.R885L 0.37 deleterious(0.03) possibly_damaging(0.906) TCGA-05-4250-01 7 4308337 4308337 G A SDK1 3'UTR 0.32 TCGA-05-4250-01 7 44323760 44323760 T C CAMK2B Missense_Mutation p.I44V 0.12 deleterious_low_confidence(0) benign(0.375) TCGA-05-4250-01 7 44560615 44560615 C A NPC1L1 Missense_Mutation p.R1019L 0.34 tolerated(0.82) benign(0.002) TCGA-05-4250-01 7 55752873 55752873 G T RNU6-389P 5'Flank 0.35 TCGA-05-4250-01 7 72662619 72662619 G T GTF2IRD2P1 RNA 0.29 TCGA-05-4250-01 7 86468581 86468581 C - GRM3 Frame_Shift_Del p.C585Vfs*11 0.28 TCGA-05-4250-01 7 88956742 88956742 C G ZNF804B Missense_Mutation p.L112V 0.20 deleterious(0) probably_damaging(0.996) TCGA-05-4250-01 7 92763290 92763290 T C SAMD9L Silent p.T665T 0.36 TCGA-05-4250-01 7 94181710 94181710 G A CASD1 Missense_Mutation p.E669K 0.18 tolerated(0.05) benign(0.355) TCGA-05-4250-01 7 97870217 97870217 G T TECPR1 Silent p.V293V 0.18 TCGA-05-4250-01 7 99490024 99490024 C A TRIM4 Missense_Mutation p.S422I 0.25 tolerated(0.1) probably_damaging(0.93) TCGA-05-4250-01 7 99905599 99905599 G A SPDYE3 Missense_Mutation p.V31M 0.38 tolerated(0.08) benign(0.145) TCGA-05-4250-01 8 10468624 10468624 C A RP1L1 Missense_Mutation p.G995V 0.23 possibly_damaging(0.605) TCGA-05-4250-01 8 105463529 105463529 G T DPYS Missense_Mutation p.P123H 0.26 deleterious(0.02) probably_damaging(0.91) TCGA-05-4250-01 8 119123195 119123195 A G EXT1 Missense_Mutation p.S31P 0.14 tolerated(0.29) benign(0.06) TCGA-05-4250-01 8 122641407 122641407 G C HAS2 Missense_Mutation p.I58M 0.31 tolerated(0.1) benign(0.089) TCGA-05-4250-01 8 142477633 142477635 GCT - MROH5 3'UTR 0.42 TCGA-05-4250-01 8 1808322 1808322 C T ARHGEF10 Silent p.I151I 0.12 TCGA-05-4250-01 8 18257533 18257533 T A NAT2 Missense_Mutation p.F7Y 0.30 deleterious(0.03) benign(0.24) TCGA-05-4250-01 8 23423746 23423746 G A SLC25A37 Missense_Mutation p.M112I 0.28 tolerated(0.34) benign(0.002) TCGA-05-4250-01 8 2830668 2830668 G T CSMD1 Nonsense_Mutation p.S2965* 0.37 TCGA-05-4250-01 8 35406908 35406908 A T UNC5D Missense_Mutation p.S68C 0.38 deleterious(0) probably_damaging(0.976) TCGA-05-4250-01 8 39666959 39666959 T G ADAM2 Silent p.I180I 0.28 TCGA-05-4250-01 8 48777168 48777168 G A PRKDC Silent p.F1839F 0.24 TCGA-05-4250-01 8 48826536 48826536 T A PRKDC Missense_Mutation p.K902N 0.30 probably_damaging(1) TCGA-05-4250-01 8 53045646 53045646 G T ST18 Silent p.T805T 0.31 TCGA-05-4250-01 8 6389879 6389879 G A ANGPT2 Missense_Mutation p.R140W 0.15 deleterious(0) probably_damaging(0.998) TCGA-05-4250-01 8 73849959 73849959 A C KCNB2 Missense_Mutation p.K790T 0.19 tolerated_low_confidence(0.25) benign(0.041) TCGA-05-4250-01 8 77618058 77618058 C A ZFHX4 Silent p.R579R 0.25 TCGA-05-4250-01 8 87242442 87242442 A G SLC7A13 Missense_Mutation p.L22S 0.23 deleterious(0) probably_damaging(0.958) TCGA-05-4250-01 8 98155450 98155450 G T CPQ 3'UTR 0.32 TCGA-05-4250-01 9 113169628 113169628 C A SVEP1 Missense_Mutation p.G2751V 0.46 probably_damaging(1) TCGA-05-4250-01 9 120476467 120476467 G A TLR4 Nonsense_Mutation p.W687* 0.44 TCGA-05-4250-01 9 130119519 130119519 C - GARNL3 Frame_Shift_Del p.M654Wfs*2 0.39 TCGA-05-4250-01 9 131454184 131454184 A G SET Missense_Mutation p.Y73C 0.47 deleterious(0.03) possibly_damaging(0.698) TCGA-05-4250-01 9 141070101 141070101 C T TUBBP5 RNA 0.36 TCGA-05-4250-01 9 5081748 5081748 G T JAK2 Missense_Mutation p.D820Y 0.48 deleterious(0) probably_damaging(0.982) TCGA-05-4250-01 9 94171718 94171718 C T NFIL3 Silent p.L433L 0.31 TCGA-05-4250-01 X 101615492 101615492 G A NXF2B 3'UTR 0.19 TCGA-05-4250-01 X 11316665 11316665 C A AMELX Intron 0.21 TCGA-05-4250-01 X 135439865 135439865 G T GPR112 Missense_Mutation p.L2310F 0.43 deleterious(0) probably_damaging(0.976) TCGA-05-4250-01 X 139866270 139866270 G A CDR1 Silent p.L88L 0.33 TCGA-05-4250-01 X 144905579 144905579 C A SLITRK2 Missense_Mutation p.H546N 0.42 tolerated(0.16) benign(0.017) TCGA-05-4250-01 X 150348572 150348572 C A GPR50 Missense_Mutation p.P173T 0.51 deleterious(0) possibly_damaging(0.893) TCGA-05-4250-01 X 151092768 151092768 C A MAGEA4 Missense_Mutation p.A211E 0.45 deleterious(0.01) possibly_damaging(0.809) TCGA-05-4250-01 X 24580290 24580290 G C PCYT1B 3'UTR 0.60 TCGA-05-4250-01 X 91873723 91873723 C A PCDH11X Silent p.V1276V 0.45 TCGA-05-4382-01 10 100182214 100182214 C A HPS1 Missense_Mutation p.G552V 0.18 deleterious(0) probably_damaging(1) TCGA-05-4382-01 10 102541090 102541090 G T PAX2 Missense_Mutation p.R195L 0.18 deleterious(0.03) benign(0.071) TCGA-05-4382-01 10 103899654 103899654 G T PPRC1 Missense_Mutation p.K463N 0.22 deleterious_low_confidence(0) possibly_damaging(0.691) TCGA-05-4382-01 10 104160161 104160161 G T NFKB2 Missense_Mutation p.G571C 0.20 deleterious(0.03) possibly_damaging(0.823) TCGA-05-4382-01 10 104488200 104488200 G T SFXN2 Silent p.A115A 0.05 TCGA-05-4382-01 10 105162908 105162908 G T PDCD11 Missense_Mutation p.V90L 0.23 deleterious(0) probably_damaging(0.933) TCGA-05-4382-01 10 106118310 106118310 A T CCDC147 Missense_Mutation p.N74I 0.27 deleterious(0) probably_damaging(0.984) TCGA-05-4382-01 10 108447959 108447959 G C SORCS1 Missense_Mutation p.H517Q 0.27 deleterious(0.05) possibly_damaging(0.755) TCGA-05-4382-01 10 112058482 112058482 T A SMNDC1 Missense_Mutation p.S63C 0.07 tolerated(0.06) possibly_damaging(0.552) TCGA-05-4382-01 10 115526214 115526214 G A PLEKHS1 Missense_Mutation p.D19N 0.05 tolerated(0.36) probably_damaging(0.963) TCGA-05-4382-01 10 1170222 1170222 G T WDR37 Missense_Mutation p.V390L 0.18 deleterious(0.05) probably_damaging(0.935) TCGA-05-4382-01 10 118196348 118196348 T C PNLIPRP3 Missense_Mutation p.Y59H 0.10 deleterious(0.01) possibly_damaging(0.9) TCGA-05-4382-01 10 118719682 118719682 T C KIAA1598 Missense_Mutation p.T78A 0.07 deleterious(0.01) possibly_damaging(0.811) TCGA-05-4382-01 10 119043130 119043130 G A PDZD8 Silent p.F1038F 0.23 TCGA-05-4382-01 10 124457441 124457441 C A C10orf120 Silent p.P272P 0.05 TCGA-05-4382-01 10 126091575 126091575 C T OAT Missense_Mutation p.R274K 0.04 tolerated(1) benign(0.004) TCGA-05-4382-01 10 129537068 129537068 C A FOXI2 Missense_Mutation p.L266M 0.43 tolerated(0.06) possibly_damaging(0.86) TCGA-05-4382-01 10 131755543 131755543 G C EBF3 Nonsense_Mutation p.S178* 0.18 TCGA-05-4382-01 10 134664758 134664758 C A TTC40 Missense_Mutation p.G1876C 0.18 tolerated(0.07) possibly_damaging(0.473) TCGA-05-4382-01 10 134664759 134664759 G A TTC40 Silent p.L1875L 0.20 TCGA-05-4382-01 10 134664760 134664760 A G TTC40 Missense_Mutation p.L1875P 0.19 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 10 135080912 135080912 T G ADAM8 Missense_Mutation p.T755P 0.08 tolerated(0.23) possibly_damaging(0.735) TCGA-05-4382-01 10 16859145 16859145 G C RSU1 5'UTR 0.08 TCGA-05-4382-01 10 18250693 18250693 A T SLC39A12 Missense_Mutation p.S149C 0.22 deleterious(0) possibly_damaging(0.873) TCGA-05-4382-01 10 20432250 20432250 C T PLXDC2 Missense_Mutation p.H190Y 0.07 deleterious(0) probably_damaging(0.985) TCGA-05-4382-01 10 21884352 21884352 C T MLLT10 Missense_Mutation p.H130Y 0.06 deleterious(0) possibly_damaging(0.646) TCGA-05-4382-01 10 23399200 23399200 G T MSRB2 Missense_Mutation p.K83N 0.13 deleterious(0.03) benign(0.019) TCGA-05-4382-01 10 24959289 24959289 G T ARHGAP21 Missense_Mutation p.T34N 0.17 tolerated(0.31) benign(0.444) TCGA-05-4382-01 10 25840010 25840010 C T GPR158 Missense_Mutation p.H504Y 0.10 tolerated(1) benign(0.012) TCGA-05-4382-01 10 26939489 26939489 T C LINC00202-2 RNA 0.14 TCGA-05-4382-01 10 27538024 27538024 C A RP11-85G18.6 Intron 0.14 TCGA-05-4382-01 10 29710241 29710241 G T PTCHD3P1 RNA 0.19 TCGA-05-4382-01 10 29775094 29775094 G A SVIL Missense_Mutation p.R1567C 0.13 deleterious(0.03) probably_damaging(0.959) TCGA-05-4382-01 10 29812654 29812654 C A SVIL Missense_Mutation p.M963I 0.16 tolerated_low_confidence(0.63) benign(0.001) TCGA-05-4382-01 10 30602883 30602883 T C MTPAP Silent p.K468K 0.12 TCGA-05-4382-01 10 30658258 30658258 C A AL161651.1 5'Flank 0.16 TCGA-05-4382-01 10 34690798 34690798 T C PARD3 Silent p.G254G 0.19 TCGA-05-4382-01 10 37508094 37508094 C A ANKRD30A Missense_Mutation p.L1096M 0.12 tolerated(0.13) benign(0.193) TCGA-05-4382-01 10 38345076 38345076 G T ZNF33A Missense_Mutation p.C675F 0.11 tolerated(0.24) benign(0.294) TCGA-05-4382-01 10 38403744 38403744 A G ZNF37A Missense_Mutation p.D26G 0.11 tolerated(0.11) possibly_damaging(0.554) TCGA-05-4382-01 10 38647418 38647418 C T HSD17B7P2 RNA 0.14 TCGA-05-4382-01 10 43288497 43288497 G T BMS1 Nonsense_Mutation p.E332* 0.05 TCGA-05-4382-01 10 45430239 45430239 C T TMEM72 Missense_Mutation p.S162F 0.06 deleterious(0.04) possibly_damaging(0.584) TCGA-05-4382-01 10 47000059 47000059 G T GPRIN2 Silent p.V393V 0.09 TCGA-05-4382-01 10 50532407 50532407 G T C10orf71 Missense_Mutation p.G606V 0.16 deleterious(0.01) probably_damaging(0.987) TCGA-05-4382-01 10 50594758 50594758 C A DRGX Silent p.R132R 0.06 TCGA-05-4382-01 10 50594759 50594759 C A DRGX Missense_Mutation p.R132L 0.06 tolerated(0.34) benign(0.024) TCGA-05-4382-01 10 50732741 50732741 C T ERCC6-PGBD3 Missense_Mutation p.M245I 0.06 deleterious_low_confidence(0) possibly_damaging(0.854) TCGA-05-4382-01 10 50736571 50736571 C A ERCC6-PGBD3 Nonsense_Mutation p.E182* 0.30 TCGA-05-4382-01 10 50818978 50818978 G C SLC18A3 Missense_Mutation p.M64I 0.19 tolerated(0.82) benign(0.01) TCGA-05-4382-01 10 52566492 52566492 G T A1CF Missense_Mutation p.F594L 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.508) TCGA-05-4382-01 10 55600113 55600113 G T PCDH15 Missense_Mutation p.T1317N 0.06 deleterious(0.04) probably_damaging(0.925) TCGA-05-4382-01 10 55626410 55626410 C A PCDH15 Missense_Mutation p.D1237Y 0.17 deleterious(0) probably_damaging(0.976) TCGA-05-4382-01 10 58117794 58117794 T A ZWINT 3'UTR 0.11 TCGA-05-4382-01 10 72285877 72285877 C A PALD1 Missense_Mutation p.A57D 0.20 deleterious(0) probably_damaging(0.959) TCGA-05-4382-01 10 72285878 72285878 C A PALD1 Silent p.A57A 0.21 TCGA-05-4382-01 10 73051452 73051452 C A UNC5B Missense_Mutation p.H520N 0.17 tolerated(0.54) benign(0) TCGA-05-4382-01 10 7786920 7786920 C T ITIH2 Silent p.L859L 0.16 TCGA-05-4382-01 10 78850213 78850213 C A KCNMA1 Missense_Mutation p.D427Y 0.21 deleterious(0) probably_damaging(1) TCGA-05-4382-01 10 78850214 78850214 C A KCNMA1 Missense_Mutation p.K426N 0.21 deleterious(0) probably_damaging(0.977) TCGA-05-4382-01 10 84733612 84733612 C A NRG3 Silent p.P451P 0.32 TCGA-05-4382-01 10 85985202 85985202 C A LRIT2 Silent p.L25L 0.24 TCGA-05-4382-01 10 86007432 86007432 G T RGR Silent p.V55V 0.07 TCGA-05-4382-01 10 87628918 87628918 A G GRID1 Missense_Mutation p.I267T 0.20 deleterious_low_confidence(0) benign(0.207) TCGA-05-4382-01 10 88705184 88705184 T A MMRN2 Missense_Mutation p.T115S 0.32 tolerated(0.68) benign(0.063) TCGA-05-4382-01 10 91144107 91144107 T A IFIT1B Missense_Mutation p.L346Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-05-4382-01 10 93716298 93716298 G T BTAF1 Missense_Mutation p.D239Y 0.31 deleterious(0.01) possibly_damaging(0.547) TCGA-05-4382-01 10 96081748 96081748 T A PLCE1 Missense_Mutation p.S2145T 0.18 deleterious(0) probably_damaging(0.98) TCGA-05-4382-01 10 96828972 96828972 G A CYP2C8 Intron 0.07 TCGA-05-4382-01 10 98165037 98165037 C A TLL2 Missense_Mutation p.D407Y 0.07 deleterious(0.02) probably_damaging(0.998) TCGA-05-4382-01 10 98819864 98819864 G T SLIT1 Silent p.P331P 0.05 TCGA-05-4382-01 10 98820417 98820417 C A SLIT1 Silent p.L307L 0.23 TCGA-05-4382-01 10 99968101 99968101 G T R3HCC1L Missense_Mutation p.R77I 0.26 deleterious(0) possibly_damaging(0.672) TCGA-05-4382-01 11 101353888 101353888 C A TRPC6 Missense_Mutation p.K434N 0.09 tolerated(0.06) benign(0.195) TCGA-05-4382-01 11 101374853 101374853 G T TRPC6 Missense_Mutation p.P283T 0.23 deleterious(0) probably_damaging(1) TCGA-05-4382-01 11 1017909 1017909 A T MUC6 Missense_Mutation p.V1631D 0.02 unknown(0) TCGA-05-4382-01 11 102743797 102743797 C A MMP12 RNA 0.10 TCGA-05-4382-01 11 102992159 102992159 A T DYNC2H1 Silent p.P473P 0.14 TCGA-05-4382-01 11 102992199 102992199 G T DYNC2H1 Missense_Mutation p.V487F 0.12 possibly_damaging(0.884) TCGA-05-4382-01 11 103270430 103270430 G T DYNC2H1 Missense_Mutation p.D4073Y 0.26 possibly_damaging(0.63) TCGA-05-4382-01 11 103908038 103908038 G T DDI1 Missense_Mutation p.R163L 0.19 deleterious(0.01) benign(0.314) TCGA-05-4382-01 11 104821732 104821732 C A CASP4 Missense_Mutation p.D156Y 0.19 deleterious(0.03) benign(0.048) TCGA-05-4382-01 11 108153533 108153533 C T ATM Nonsense_Mutation p.Q1225* 0.12 TCGA-05-4382-01 11 108383973 108383973 T C EXPH5 Missense_Mutation p.N754S 0.24 tolerated(0.24) benign(0.015) TCGA-05-4382-01 11 110128497 110128497 G T RDX Missense_Mutation p.D231E 0.12 tolerated(0.65) benign(0.001) TCGA-05-4382-01 11 112050133 112050134 GA T BCO2 Frame_Shift_Del p.G74Vfs*46 0.18 TCGA-05-4382-01 11 11314629 11314629 C A GALNT18 Nonsense_Mutation p.E542* 0.11 TCGA-05-4382-01 11 113287585 113287585 C A DRD2 Missense_Mutation p.D178Y 0.26 deleterious(0) possibly_damaging(0.472) TCGA-05-4382-01 11 113860404 113860404 G T HTR3A Silent p.L490L 0.12 TCGA-05-4382-01 11 117261501 117261501 G T CEP164 Missense_Mutation p.R648M 0.17 deleterious(0) benign(0.409) TCGA-05-4382-01 11 117309680 117309680 G C DSCAML1 Silent p.R1448R 0.11 TCGA-05-4382-01 11 119063892 119063892 C A CCDC153 Missense_Mutation p.E106D 0.11 deleterious(0.01) probably_damaging(0.962) TCGA-05-4382-01 11 11957904 11957904 G T USP47 Missense_Mutation p.D574Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-05-4382-01 11 120097704 120097704 A G OAF Silent p.Q182Q 0.13 TCGA-05-4382-01 11 121986441 121986441 C A BLID Missense_Mutation p.V64L 0.18 deleterious_low_confidence(0) possibly_damaging(0.621) TCGA-05-4382-01 11 123625061 123625061 G C OR6X1 Missense_Mutation p.P56A 0.15 deleterious(0.02) probably_damaging(1) TCGA-05-4382-01 11 123886909 123886909 T A OR10G4 Missense_Mutation p.F210I 0.12 deleterious(0) possibly_damaging(0.667) TCGA-05-4382-01 11 123901162 123901162 T C OR10G8 Missense_Mutation p.L278P 0.25 deleterious(0) probably_damaging(0.987) TCGA-05-4382-01 11 124120465 124120465 G T OR8G1 Missense_Mutation p.A15S 0.12 tolerated_low_confidence(0.11) benign(0.012) TCGA-05-4382-01 11 124180114 124180114 G T OR8D1 Silent p.P183P 0.08 TCGA-05-4382-01 11 124756387 124756387 G T ROBO4 Missense_Mutation p.P923T 0.07 deleterious(0.03) possibly_damaging(0.641) TCGA-05-4382-01 11 125873991 125873991 C A CDON Intron 0.18 TCGA-05-4382-01 11 128708958 128708958 A G KCNJ1 3'UTR 0.34 TCGA-05-4382-01 11 128709558 128709558 A G KCNJ1 Missense_Mutation p.V213A 0.10 deleterious(0) probably_damaging(0.998) TCGA-05-4382-01 11 128839671 128839671 C A ARHGAP32 Missense_Mutation p.G1799W 0.18 deleterious(0) probably_damaging(1) TCGA-05-4382-01 11 132184660 132184660 G T NTM Intron 0.12 TCGA-05-4382-01 11 14504598 14504598 C A COPB1 Missense_Mutation p.A313S 0.12 tolerated(1) benign(0.002) TCGA-05-4382-01 11 16117639 16117640 - T SOX6 Frame_Shift_Ins p.I335Nfs*2 0.10 TCGA-05-4382-01 11 16340125 16340125 T G SOX6 Missense_Mutation p.E104D 0.13 tolerated_low_confidence(0.11) benign(0.028) TCGA-05-4382-01 11 17172116 17172116 C A PIK3C2A Missense_Mutation p.G419V 0.09 deleterious(0.03) probably_damaging(0.969) TCGA-05-4382-01 11 17428936 17428936 C A ABCC8 Missense_Mutation p.R962M 0.12 deleterious(0) benign(0.109) TCGA-05-4382-01 11 18048061 18048061 G A TPH1 Missense_Mutation p.S260L 0.09 deleterious(0) possibly_damaging(0.471) TCGA-05-4382-01 11 18369250 18369250 G C GTF2H1 Missense_Mutation p.G318A 0.06 tolerated(0.3) benign(0.23) TCGA-05-4382-01 11 18436751 18436751 C G LDHC Silent p.A49A 0.12 TCGA-05-4382-01 11 197628 197628 C A ODF3 Silent p.L59L 0.16 TCGA-05-4382-01 11 20429516 20429516 G T PRMT3 Silent p.G277G 0.17 TCGA-05-4382-01 11 20673895 20673895 C A SLC6A5 Missense_Mutation p.P711T 0.15 deleterious(0) probably_damaging(0.969) TCGA-05-4382-01 11 20673896 20673896 C A SLC6A5 Missense_Mutation p.P711H 0.16 deleterious(0) probably_damaging(0.997) TCGA-05-4382-01 11 22363284 22363284 C G SLC17A6 Silent p.V99V 0.10 TCGA-05-4382-01 11 22397614 22397614 G T SLC17A6 Nonsense_Mutation p.G421* 0.12 TCGA-05-4382-01 11 26463539 26463539 G T ANO3 Missense_Mutation p.A41S 0.19 deleterious_low_confidence(0.01) benign(0.192) TCGA-05-4382-01 11 26552826 26552826 C G ANO3 Missense_Mutation p.P271R 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-05-4382-01 11 28058003 28058003 T A KIF18A Silent p.T719T 0.14 TCGA-05-4382-01 11 30433113 30433113 C A MPPED2 Missense_Mutation p.G263C 0.10 deleterious(0) probably_damaging(0.997) TCGA-05-4382-01 11 31327816 31327816 G A DCDC1 Missense_Mutation p.T185I 0.09 tolerated(0.07) possibly_damaging(0.499) TCGA-05-4382-01 11 31812322 31812322 G T PAX6 Silent p.T387T 0.11 TCGA-05-4382-01 11 31822341 31822341 C T PAX6 Missense_Mutation p.G155S 0.11 tolerated(0.92) benign(0.029) TCGA-05-4382-01 11 32413568 32413568 G A WT1 Missense_Mutation p.S461F 0.11 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-05-4382-01 11 33566867 33566867 G C KIAA1549L Missense_Mutation p.G813R 0.11 deleterious(0) probably_damaging(0.965) TCGA-05-4382-01 11 33792333 33792333 C A FBXO3 Missense_Mutation p.D50Y 0.11 deleterious(0.01) probably_damaging(0.985) TCGA-05-4382-01 11 33881003 33881003 G C LMO2 Missense_Mutation p.Q195E 0.07 tolerated(0.09) benign(0.003) TCGA-05-4382-01 11 36614951 36614951 G T RAG2 Silent p.I256I 0.13 TCGA-05-4382-01 11 3682645 3682645 T A ART1 Splice_Site p.X296_splice 0.09 TCGA-05-4382-01 11 43380493 43380493 C A TTC17 5'UTR 0.21 TCGA-05-4382-01 11 44286357 44286357 G T ALX4 3'UTR 0.16 TCGA-05-4382-01 11 4510987 4510987 C A OR52K1 Missense_Mutation p.P286Q 0.11 deleterious(0) probably_damaging(0.992) TCGA-05-4382-01 11 45671848 45671848 C A CHST1 Missense_Mutation p.R209L 0.11 deleterious(0) probably_damaging(1) TCGA-05-4382-01 11 46393118 46393118 C A DGKZ Missense_Mutation p.P430T 0.11 deleterious(0) probably_damaging(0.996) TCGA-05-4382-01 11 48285915 48285915 G T OR4X1 Missense_Mutation p.G168V 0.15 deleterious(0) probably_damaging(0.992) TCGA-05-4382-01 11 48510574 48510574 C A OR4A47 Missense_Mutation p.P77H 0.11 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-05-4382-01 11 4869790 4869790 C A OR51S1 Missense_Mutation p.D217Y 0.14 deleterious(0) probably_damaging(1) TCGA-05-4382-01 11 4903867 4903867 C A OR51T1 Missense_Mutation p.H273Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-05-4382-01 11 4928835 4928835 C A OR51A7 Missense_Mutation p.P79H 0.14 deleterious(0) probably_damaging(0.995) TCGA-05-4382-01 11 5013214 5013214 G A MMP26 Missense_Mutation p.A206T 0.10 deleterious(0) possibly_damaging(0.897) TCGA-05-4382-01 11 5021020 5021020 C T OR51L1 Silent p.L270L 0.16 TCGA-05-4382-01 11 51515980 51515980 A C OR4C46 Missense_Mutation p.K233N 0.05 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-05-4382-01 11 5290849 5290849 C A HBE1 Silent p.S50S 0.07 TCGA-05-4382-01 11 55110916 55110916 G T OR4A16 Missense_Mutation p.M80I 0.20 tolerated_low_confidence(1) benign(0) TCGA-05-4382-01 11 55136382 55136382 G A OR4A15 Silent p.L341L 0.15 TCGA-05-4382-01 11 55339919 55339919 G T OR4C16 Missense_Mutation p.G106C 0.21 deleterious(0.01) probably_damaging(1) TCGA-05-4382-01 11 55405850 55405850 A G OR4P4 Missense_Mutation p.N6S 0.07 deleterious(0.01) possibly_damaging(0.858) TCGA-05-4382-01 11 55406188 55406188 G T OR4P4 Missense_Mutation p.D119Y 0.19 deleterious(0) probably_damaging(1) TCGA-05-4382-01 11 55406302 55406302 C G OR4P4 Missense_Mutation p.Q157E 0.13 deleterious(0.01) possibly_damaging(0.861) TCGA-05-4382-01 11 55433201 55433201 T C OR4C6 Missense_Mutation p.C187R 0.20 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-05-4382-01 11 55433202 55433202 G T OR4C6 Missense_Mutation p.C187F 0.20 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-05-4382-01 11 55541279 55541279 T C OR5D13 Silent p.Y122Y 0.07 TCGA-05-4382-01 11 55563543 55563543 C A OR5D14 Missense_Mutation p.S171Y 0.20 tolerated(0.82) benign(0.022) TCGA-05-4382-01 11 55606961 55606961 C A OR5D16 Missense_Mutation p.S245Y 0.07 deleterious(0) probably_damaging(1) TCGA-05-4382-01 11 55653030 55653030 C A TRIM51 Missense_Mutation p.N42K 0.16 tolerated(0.13) benign(0.371) TCGA-05-4382-01 11 55659225 55659225 C A TRIM51 3'UTR 0.14 TCGA-05-4382-01 11 55681905 55681905 C A OR5W2 Missense_Mutation p.D52Y 0.23 deleterious(0.01) possibly_damaging(0.506) TCGA-05-4382-01 11 557581 557581 G A C11orf35 Silent p.P205P 0.07 TCGA-05-4382-01 11 55761452 55761452 G T OR5F1 Missense_Mutation p.S217Y 0.10 deleterious(0) probably_damaging(0.991) TCGA-05-4382-01 11 55861565 55861565 C A OR8I2 Missense_Mutation p.P261H 0.06 deleterious(0) probably_damaging(0.947) TCGA-05-4382-01 11 55904794 55904794 A G OR8J3 Missense_Mutation p.V134A 0.07 tolerated(0.09) benign(0.011) TCGA-05-4382-01 11 55926935 55926935 G T OR8K5 Missense_Mutation p.P287T 0.13 deleterious_low_confidence(0) possibly_damaging(0.849) TCGA-05-4382-01 11 55944330 55944330 C A OR5J2 Silent p.P79P 0.11 TCGA-05-4382-01 11 55944912 55944912 G T OR5J2 Silent p.V273V 0.18 TCGA-05-4382-01 11 56185507 56185507 A T OR5R1 Missense_Mutation p.F68I 0.15 tolerated(0.38) probably_damaging(0.996) TCGA-05-4382-01 11 5653697 5653697 G A TRIM34 Missense_Mutation p.A46T 0.12 tolerated(0.06) benign(0.013) TCGA-05-4382-01 11 57886814 57886814 A G OR9I1 Missense_Mutation p.Y35H 0.15 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 11 57970964 57970964 G T OR1S2 Silent p.S230S 0.15 TCGA-05-4382-01 11 57970965 57970965 G T OR1S2 Missense_Mutation p.S230Y 0.15 deleterious(0) probably_damaging(1) TCGA-05-4382-01 11 57970994 57970994 G C OR1S2 Missense_Mutation p.I220M 0.25 tolerated(0.36) probably_damaging(0.925) TCGA-05-4382-01 11 57971380 57971380 G T OR1S2 Missense_Mutation p.P92T 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-05-4382-01 11 5799384 5799384 C T OR52N5 Missense_Mutation p.G161S 0.16 tolerated(0.36) benign(0.1) TCGA-05-4382-01 11 58207340 58207340 A C OR5B12 Missense_Mutation p.C95W 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-05-4382-01 11 5906024 5906024 C A OR52E4 Missense_Mutation p.L168M 0.12 deleterious(0) probably_damaging(1) TCGA-05-4382-01 11 6023680 6023680 G C OR56A4 Missense_Mutation p.I233M 0.15 tolerated(0.07) possibly_damaging(0.822) TCGA-05-4382-01 11 607913 607913 C G PHRF1 Missense_Mutation p.I818M 0.12 deleterious(0.02) probably_damaging(0.965) TCGA-05-4382-01 11 608852 608852 C G PHRF1 Silent p.L1131L 0.20 TCGA-05-4382-01 11 60885946 60885946 T A CD5 Missense_Mutation p.C132S 0.24 deleterious(0) probably_damaging(1) TCGA-05-4382-01 11 62572875 62572875 G A NXF1 5'UTR 0.26 TCGA-05-4382-01 11 6292387 6292387 C T CCKBR Missense_Mutation p.P320S 0.16 tolerated(0.89) benign(0.003) TCGA-05-4382-01 11 64698956 64698956 G C PPP2R5B Missense_Mutation p.E314Q 0.17 deleterious(0.05) probably_damaging(0.966) TCGA-05-4382-01 11 64789247 64789247 G A ARL2 Missense_Mutation p.A159T 0.13 deleterious(0.02) benign(0.265) TCGA-05-4382-01 11 65270534 65270534 G T MALAT1 RNA 0.36 TCGA-05-4382-01 11 65358065 65358065 T A EHBP1L1 Splice_Site p.X1428_splice 0.20 TCGA-05-4382-01 11 65554911 65554911 C A OVOL1 Missense_Mutation p.P23T 0.26 deleterious(0) probably_damaging(0.994) TCGA-05-4382-01 11 65793261 65793261 G T CATSPER1 Missense_Mutation p.S197Y 0.17 tolerated(1) benign(0.025) TCGA-05-4382-01 11 66190662 66190662 C A NPAS4 Missense_Mutation p.P256H 0.11 deleterious(0) probably_damaging(1) TCGA-05-4382-01 11 6662548 6662548 C A DCHS1 Silent p.G99G 0.08 TCGA-05-4382-01 11 67226161 67226161 C A CABP4 3'UTR 0.30 TCGA-05-4382-01 11 67402363 67402363 T C TBX10 Missense_Mutation p.K101E 0.16 deleterious(0) possibly_damaging(0.594) TCGA-05-4382-01 11 6816982 6816982 G T OR6A2 5'UTR 0.12 TCGA-05-4382-01 11 6942258 6942258 C A OR2D3 Missense_Mutation p.T9K 0.15 tolerated_low_confidence(0.07) benign(0.017) TCGA-05-4382-01 11 702964 702964 A G TMEM80 Silent p.T107T 0.17 TCGA-05-4382-01 11 7064401 7064401 C A NLRP14 Missense_Mutation p.Q382K 0.12 deleterious(0.04) benign(0.062) TCGA-05-4382-01 11 71150017 71150017 C G DHCR7 Missense_Mutation p.A247P 0.10 deleterious(0) probably_damaging(0.971) TCGA-05-4382-01 11 73814209 73814209 C G C2CD3 Missense_Mutation p.W849C 0.19 deleterious(0) probably_damaging(1) TCGA-05-4382-01 11 74799863 74799863 T A OR2AT4 Missense_Mutation p.N299I 0.24 deleterious(0) probably_damaging(0.95) TCGA-05-4382-01 11 77671418 77671418 C A INTS4 Missense_Mutation p.G226V 0.10 deleterious(0) probably_damaging(0.982) TCGA-05-4382-01 11 77671419 77671419 C A INTS4 Nonsense_Mutation p.G226* 0.11 TCGA-05-4382-01 11 7818246 7818246 G - OR5P2 Frame_Shift_Del p.L82Wfs*61 0.09 TCGA-05-4382-01 11 78413441 78413441 A T TENM4 Missense_Mutation p.L1406Q 0.13 deleterious(0) possibly_damaging(0.814) TCGA-05-4382-01 11 78437147 78437147 T A TENM4 Missense_Mutation p.H1176L 0.20 deleterious(0) probably_damaging(0.975) TCGA-05-4382-01 11 7847496 7847496 A T OR5P3 Silent p.T8T 0.12 TCGA-05-4382-01 11 7982364 7982364 C A NLRP10 Missense_Mutation p.R265S 0.12 tolerated(0.16) benign(0.043) TCGA-05-4382-01 11 7982526 7982526 C A NLRP10 Silent p.V211V 0.10 TCGA-05-4382-01 11 799386 799386 C A PIDD Missense_Mutation p.R885L 0.08 tolerated(0.08) benign(0.005) TCGA-05-4382-01 11 86802403 86802403 G T TMEM135 Splice_Site p.X121_splice 0.30 TCGA-05-4382-01 11 88330421 88330421 T C GRM5 Silent p.E498E 0.21 TCGA-05-4382-01 11 89403612 89403612 G A FOLH1B RNA 0.08 TCGA-05-4382-01 11 89424067 89424067 C A FOLH1B RNA 0.17 TCGA-05-4382-01 11 8959435 8959435 G T ASCL3 Missense_Mutation p.P92T 0.13 deleterious(0.01) benign(0.165) TCGA-05-4382-01 11 89882210 89882210 G T NAALAD2 Missense_Mutation p.G140C 0.07 deleterious(0) probably_damaging(0.994) TCGA-05-4382-01 11 89907012 89907012 G T NAALAD2 Silent p.G477G 0.22 TCGA-05-4382-01 11 92258014 92258014 G T FAT3 Missense_Mutation p.Q1169H 0.08 benign(0.062) TCGA-05-4382-01 11 93844214 93844214 C A HEPHL1 Missense_Mutation p.T1064K 0.38 deleterious(0.02) probably_damaging(0.997) TCGA-05-4382-01 11 94129655 94129655 C A GPR83 Missense_Mutation p.K141N 0.21 deleterious(0.02) probably_damaging(0.985) TCGA-05-4382-01 11 94731346 94731346 G T KDM4D Missense_Mutation p.E270D 0.06 deleterious(0) probably_damaging(1) TCGA-05-4382-01 11 94731482 94731482 A T KDM4D Missense_Mutation p.R316W 0.10 deleterious(0.02) probably_damaging(0.966) TCGA-05-4382-01 11 99715818 99715818 G T CNTN5 Splice_Site p.X134_splice 0.20 TCGA-05-4382-01 12 100444090 100444090 C T UHRF1BP1L Missense_Mutation p.V1192I 0.16 tolerated(0.06) benign(0.047) TCGA-05-4382-01 12 100897267 100897267 C A NR1H4 Silent p.P34P 0.13 TCGA-05-4382-01 12 101336246 101336246 C A ANO4 Missense_Mutation p.P95H 0.06 tolerated(0.11) possibly_damaging(0.754) TCGA-05-4382-01 12 10226012 10226012 T A CLEC1A Splice_Site p.X182_splice 0.14 TCGA-05-4382-01 12 10321772 10321772 G T OLR1 Missense_Mutation p.L27I 0.15 tolerated(0.19) benign(0.148) TCGA-05-4382-01 12 103271254 103271254 C A PAH Missense_Mutation p.D143Y 0.07 deleterious(0) probably_damaging(0.987) TCGA-05-4382-01 12 10342590 10342590 C T TMEM52B Missense_Mutation p.L115F 0.21 tolerated(0.2) probably_damaging(0.975) TCGA-05-4382-01 12 105151598 105151598 G T CHST11 3'UTR 0.17 TCGA-05-4382-01 12 105467714 105467714 G T ALDH1L2 Missense_Mutation p.H40N 0.15 tolerated_low_confidence(0.51) benign(0.001) TCGA-05-4382-01 12 106480519 106480519 C A NUAK1 Missense_Mutation p.C169F 0.21 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 12 106763069 106763069 G T POLR3B Missense_Mutation p.V82F 0.11 deleterious(0) probably_damaging(0.914) TCGA-05-4382-01 12 106773888 106773888 G C POLR3B Missense_Mutation p.E232Q 0.06 deleterious(0.01) probably_damaging(0.965) TCGA-05-4382-01 12 107113822 107113822 G T RFX4 Missense_Mutation p.C417F 0.09 tolerated(0.24) possibly_damaging(0.519) TCGA-05-4382-01 12 108589794 108589794 C T WSCD2 Missense_Mutation p.A62V 0.11 tolerated(0.27) benign(0.079) TCGA-05-4382-01 12 108641840 108641840 A C WSCD2 Missense_Mutation p.K473T 0.14 deleterious(0) possibly_damaging(0.886) TCGA-05-4382-01 12 108985493 108985493 C A TMEM119 Missense_Mutation p.G223W 0.05 deleterious(0) probably_damaging(0.995) TCGA-05-4382-01 12 109306216 109306216 C A SVOP 3'UTR 0.08 TCGA-05-4382-01 12 109539805 109539805 G T UNG Splice_Site p.X178_splice 0.13 TCGA-05-4382-01 12 110976020 110976020 T C PPTC7 Missense_Mutation p.E262G 0.11 tolerated(0.33) benign(0.063) TCGA-05-4382-01 12 111748166 111748166 C A CUX2 Missense_Mutation p.P527H 0.14 deleterious(0.01) benign(0.332) TCGA-05-4382-01 12 111748242 111748242 G T CUX2 Missense_Mutation p.Q552H 0.20 tolerated(0.09) benign(0.011) TCGA-05-4382-01 12 113384680 113384680 G T OAS3 Missense_Mutation p.G257C 0.08 deleterious(0.02) possibly_damaging(0.868) TCGA-05-4382-01 12 1136942 1136942 G - ERC1 5'UTR 0.12 TCGA-05-4382-01 12 116428865 116428865 C A MED13L Silent p.L1298L 0.13 TCGA-05-4382-01 12 117593705 117593705 C A FBXO21 Missense_Mutation p.M529I 0.11 deleterious(0.02) probably_damaging(0.919) TCGA-05-4382-01 12 120146113 120146113 C A CIT Silent p.R1694R 0.19 TCGA-05-4382-01 12 120221783 120221783 C A CIT Nonsense_Mutation p.E492* 0.11 TCGA-05-4382-01 12 121004691 121004691 G C RNF10 Missense_Mutation p.C650S 0.17 tolerated(0.61) benign(0.001) TCGA-05-4382-01 12 122217461 122217461 G C RHOF Silent p.L193L 0.11 TCGA-05-4382-01 12 123105090 123105090 C T KNTC1 Missense_Mutation p.P2072S 0.17 tolerated(0.08) probably_damaging(0.999) TCGA-05-4382-01 12 123694639 123694639 G A MPHOSPH9 Silent p.F234F 0.08 TCGA-05-4382-01 12 123815810 123815810 A C SBNO1 Missense_Mutation p.L341W 0.10 deleterious(0.02) probably_damaging(0.995) TCGA-05-4382-01 12 124497156 124497156 C T ZNF664 Silent p.T155T 0.07 TCGA-05-4382-01 12 125834246 125834246 C A TMEM132B Missense_Mutation p.L101I 0.18 deleterious(0.04) possibly_damaging(0.661) TCGA-05-4382-01 12 126135350 126135350 G T TMEM132B Missense_Mutation p.G584W 0.06 deleterious(0.01) probably_damaging(0.992) TCGA-05-4382-01 12 126139132 126139132 G T TMEM132B Missense_Mutation p.G1038V 0.10 tolerated(0.46) probably_damaging(0.997) TCGA-05-4382-01 12 13243462 13243462 G A GSG1 Silent p.S113S 0.17 TCGA-05-4382-01 12 13719974 13719974 G T GRIN2B Silent p.V861V 0.09 TCGA-05-4382-01 12 14778850 14778850 C T GUCY2C Splice_Site p.X750_splice 0.17 TCGA-05-4382-01 12 16189280 16189280 G A DERA Missense_Mutation p.G289S 0.07 deleterious(0) probably_damaging(1) TCGA-05-4382-01 12 18891977 18891977 G T CAPZA3 Missense_Mutation p.D259Y 0.14 deleterious(0.02) probably_damaging(0.972) TCGA-05-4382-01 12 20766631 20766631 A T PDE3A Silent p.P422P 0.19 TCGA-05-4382-01 12 21391984 21391984 C A SLCO1B1 Missense_Mutation p.A646D 0.24 tolerated(0.08) possibly_damaging(0.541) TCGA-05-4382-01 12 22624354 22624354 C A C2CD5 Silent p.L779L 0.18 TCGA-05-4382-01 12 24736571 24736571 G T LINC00477 RNA 0.11 TCGA-05-4382-01 12 247571 247571 C A IQSEC3 Missense_Mutation p.P348T 0.14 tolerated(0.22) probably_damaging(0.989) TCGA-05-4382-01 12 247771 247771 C G IQSEC3 Missense_Mutation p.D414E 0.17 deleterious(0.01) possibly_damaging(0.594) TCGA-05-4382-01 12 25347895 25347895 C G CASC1 Intron 0.28 TCGA-05-4382-01 12 26835587 26835587 T - ITPR2 Frame_Shift_Del p.R390Gfs*9 0.29 TCGA-05-4382-01 12 27234183 27234183 G T C12orf71 Missense_Mutation p.A245E 0.22 tolerated(0.16) possibly_damaging(0.9) TCGA-05-4382-01 12 29624839 29624839 G T OVCH1 Missense_Mutation p.H584Q 0.29 deleterious(0.01) probably_damaging(0.982) TCGA-05-4382-01 12 29626011 29626011 C A OVCH1 Missense_Mutation p.K542N 0.16 tolerated(0.12) benign(0.015) TCGA-05-4382-01 12 29629149 29629149 C G OVCH1 Missense_Mutation p.K487N 0.06 tolerated(0.05) benign(0.049) TCGA-05-4382-01 12 29640733 29640733 C A OVCH1 Missense_Mutation p.C262F 0.30 tolerated(0.09) benign(0.225) TCGA-05-4382-01 12 29648356 29648356 C - OVCH1 Frame_Shift_Del p.E106Sfs*31 0.14 TCGA-05-4382-01 12 31566471 31566471 C T DENND5B Silent p.K860K 0.15 TCGA-05-4382-01 12 33030954 33030954 C A PKP2 Missense_Mutation p.R287M 0.08 deleterious(0.01) possibly_damaging(0.627) TCGA-05-4382-01 12 333247 333247 G T SLC6A13 Missense_Mutation p.H408N 0.09 tolerated(0.31) benign(0.001) TCGA-05-4382-01 12 39751055 39751055 C A KIF21A Missense_Mutation p.R467I 0.19 deleterious(0.02) possibly_damaging(0.739) TCGA-05-4382-01 12 41316138 41316138 C A CNTN1 Missense_Mutation p.P103H 0.19 deleterious(0) probably_damaging(1) TCGA-05-4382-01 12 42860072 42860072 C A PRICKLE1 Missense_Mutation p.K233N 0.07 deleterious(0) probably_damaging(0.994) TCGA-05-4382-01 12 44124506 44124506 C T PUS7L Splice_Site p.X594_splice 0.18 TCGA-05-4382-01 12 45771878 45771878 G T ANO6 Missense_Mutation p.V404L 0.14 tolerated(0.06) probably_damaging(0.946) TCGA-05-4382-01 12 45771893 45771893 T A ANO6 Missense_Mutation p.W409R 0.14 deleterious(0) probably_damaging(1) TCGA-05-4382-01 12 48134466 48134466 G C RAPGEF3 Silent p.P730P 0.19 TCGA-05-4382-01 12 49110580 49110580 C A CCNT1 5'UTR 0.09 TCGA-05-4382-01 12 49239371 49239371 G A DDX23 Silent p.S65S 0.17 TCGA-05-4382-01 12 49491726 49491726 C A LMBR1L Splice_Site p.X468_splice 0.13 TCGA-05-4382-01 12 49521755 49521755 C A TUBA1B Nonsense_Mutation p.G448* 0.13 TCGA-05-4382-01 12 49951180 49951180 T G KCNH3 Missense_Mutation p.L899R 0.17 deleterious(0) probably_damaging(0.99) TCGA-05-4382-01 12 49951281 49951281 G A KCNH3 Missense_Mutation p.G933R 0.22 tolerated_low_confidence(0.12) benign(0.008) TCGA-05-4382-01 12 5021978 5021978 C A KCNA1 Nonsense_Mutation p.C478* 0.09 TCGA-05-4382-01 12 5022022 5022022 C A KCNA1 Missense_Mutation p.T493N 0.21 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-05-4382-01 12 50529760 50529760 G A CERS5 Silent p.I243I 0.06 TCGA-05-4382-01 12 51385987 51385987 G A SLC11A2 Silent p.L474L 0.05 TCGA-05-4382-01 12 51390650 51390650 C A SLC11A2 Nonsense_Mutation p.G290* 0.20 TCGA-05-4382-01 12 5153695 5153695 G T KCNA5 Missense_Mutation p.G128W 0.07 deleterious(0) probably_damaging(1) TCGA-05-4382-01 12 52168053 52168053 C G SCN8A Missense_Mutation p.I1242M 0.06 deleterious(0.01) probably_damaging(0.985) TCGA-05-4382-01 12 52647092 52647092 G T KRT7 3'Flank 0.16 TCGA-05-4382-01 12 52840891 52840891 G T KRT6B 3'UTR 0.19 TCGA-05-4382-01 12 52845379 52845379 C A KRT6B Nonsense_Mutation p.E162* 0.08 TCGA-05-4382-01 12 52911461 52911461 C A KRT5 Silent p.L335L 0.17 TCGA-05-4382-01 12 52943891 52943891 T C KRT71 Missense_Mutation p.E193G 0.10 deleterious(0.02) possibly_damaging(0.72) TCGA-05-4382-01 12 52960871 52960871 C A KRT74 Missense_Mutation p.S491I 0.09 tolerated_low_confidence(0.33) benign(0.372) TCGA-05-4382-01 12 52992867 52992867 C A KRT72 Silent p.V152V 0.14 TCGA-05-4382-01 12 54963069 54963069 G T PDE1B Missense_Mutation p.R110L 0.12 tolerated(0.09) probably_damaging(0.92) TCGA-05-4382-01 12 54963070 54963070 G T PDE1B Silent p.R110R 0.12 TCGA-05-4382-01 12 55945598 55945598 G A OR6C4 Missense_Mutation p.M196I 0.07 tolerated_low_confidence(0.68) benign(0.001) TCGA-05-4382-01 12 56711296 56711296 G C PAN2 3'UTR 0.20 TCGA-05-4382-01 12 57106635 57106635 C G NACA Missense_Mutation p.V900L 0.06 deleterious_low_confidence(0) possibly_damaging(0.747) TCGA-05-4382-01 12 5724381 5724381 G T ANO2 Silent p.P633P 0.18 TCGA-05-4382-01 12 57317743 57317743 G T SDR9C7 Missense_Mutation p.S272R 0.18 deleterious(0.05) benign(0.101) TCGA-05-4382-01 12 57431662 57431662 C A MYO1A Missense_Mutation p.G651V 0.14 deleterious(0) probably_damaging(0.971) TCGA-05-4382-01 12 57496082 57496082 C A STAT6 Missense_Mutation p.Q501H 0.18 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 12 57559898 57559898 G T LRP1 Missense_Mutation p.K901N 0.13 probably_damaging(0.985) TCGA-05-4382-01 12 57861912 57861912 C G GLI1 Missense_Mutation p.R405G 0.15 tolerated(0.11) probably_damaging(0.996) TCGA-05-4382-01 12 57881835 57881835 G T MARS 5'UTR 0.17 TCGA-05-4382-01 12 57965898 57965898 C A KIF5A Missense_Mutation p.L473M 0.18 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 12 57987870 57987870 C A PIP4K2C Missense_Mutation p.S79R 0.10 tolerated(0.14) benign(0.056) TCGA-05-4382-01 12 58000747 58000747 C T DTX3 Missense_Mutation p.P34L 0.05 tolerated(0.15) possibly_damaging(0.652) TCGA-05-4382-01 12 6125812 6125812 G A VWF Silent p.L1727L 0.12 TCGA-05-4382-01 12 63543865 63543865 G T AVPR1A Missense_Mutation p.T251K 0.12 deleterious(0.01) benign(0.198) TCGA-05-4382-01 12 6710533 6710533 C A CHD4 Missense_Mutation p.V241L 0.11 tolerated_low_confidence(0.29) benign(0.417) TCGA-05-4382-01 12 6952808 6952808 G T GNB3 Missense_Mutation p.C148F 0.21 deleterious(0.02) possibly_damaging(0.493) TCGA-05-4382-01 12 69656271 69656271 A G CPSF6 Missense_Mutation p.R530G 0.08 tolerated_low_confidence(0.07) unknown(0) TCGA-05-4382-01 12 6969609 6969609 A T USP5 Missense_Mutation p.Q433L 0.06 deleterious(0) probably_damaging(1) TCGA-05-4382-01 12 70713103 70713103 G T CNOT2 Missense_Mutation p.G66V 0.07 deleterious_low_confidence(0.01) benign(0.155) TCGA-05-4382-01 12 70713110 70713110 G T CNOT2 Silent p.L68L 0.11 TCGA-05-4382-01 12 70953023 70953023 G T PTPRB Intron 0.10 TCGA-05-4382-01 12 71531812 71531812 T C TSPAN8 Missense_Mutation p.Y122C 0.13 tolerated(0.18) possibly_damaging(0.84) TCGA-05-4382-01 12 72094844 72094844 A C TMEM19 3'UTR 0.15 TCGA-05-4382-01 12 72680634 72680634 C T TRHDE Missense_Mutation p.T318M 0.12 deleterious(0.04) probably_damaging(0.997) TCGA-05-4382-01 12 7649500 7649500 C G CD163 Missense_Mutation p.Q336H 0.20 tolerated(0.3) benign(0.008) TCGA-05-4382-01 12 76742009 76742009 C A BBS10 Nonsense_Mutation p.E44* 0.09 TCGA-05-4382-01 12 78400265 78400265 G T NAV3 Missense_Mutation p.G316V 0.18 tolerated(0.09) probably_damaging(1) TCGA-05-4382-01 12 78510671 78510671 G T NAV3 Missense_Mutation p.R919M 0.12 deleterious(0) possibly_damaging(0.774) TCGA-05-4382-01 12 78511847 78511847 C A NAV3 Missense_Mutation p.T937N 0.05 tolerated(0.41) benign(0.004) TCGA-05-4382-01 12 78513204 78513204 T A NAV3 Silent p.S1076S 0.16 TCGA-05-4382-01 12 78542637 78542637 C G NAV3 Missense_Mutation p.R1575G 0.11 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 12 80771646 80771646 G T OTOGL Missense_Mutation p.D2285Y 0.11 deleterious(0) probably_damaging(0.958) TCGA-05-4382-01 12 81747008 81747008 T A PPFIA2 Missense_Mutation p.R628S 0.20 tolerated(0.36) benign(0.036) TCGA-05-4382-01 12 85285975 85285975 A G SLC6A15 5'UTR 0.12 TCGA-05-4382-01 12 85421778 85421778 G T TSPAN19 Missense_Mutation p.P55T 0.12 tolerated(0.14) benign(0) TCGA-05-4382-01 12 85677430 85677430 C A ALX1 Silent p.R103R 0.09 TCGA-05-4382-01 12 94618082 94618082 C T PLXNC1 Missense_Mutation p.S594L 0.15 tolerated(0.09) benign(0.007) TCGA-05-4382-01 12 94654449 94654449 C A PLXNC1 Missense_Mutation p.L1095M 0.17 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 12 95397411 95397411 C A NDUFA12 Missense_Mutation p.G16C 0.10 deleterious(0.03) possibly_damaging(0.799) TCGA-05-4382-01 12 994341 994341 A C WNK1 Silent p.S1457S 0.12 TCGA-05-4382-01 13 100543590 100543590 G A CLYBL Missense_Mutation p.G316R 0.17 deleterious(0) probably_damaging(0.993) TCGA-05-4382-01 13 101717915 101717915 T C NALCN Splice_Site p.X1483_splice 0.07 TCGA-05-4382-01 13 101736134 101736134 C A NALCN Missense_Mutation p.D1171Y 0.09 deleterious(0) probably_damaging(0.996) TCGA-05-4382-01 13 101763040 101763040 C A NALCN Splice_Site p.X765_splice 0.25 TCGA-05-4382-01 13 102029341 102029341 G T NALCN Missense_Mutation p.L148M 0.08 deleterious(0.03) possibly_damaging(0.619) TCGA-05-4382-01 13 102250614 102250614 G T ITGBL1 Missense_Mutation p.C327F 0.11 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 13 102344976 102344976 G T ITGBL1 Missense_Mutation p.D353Y 0.27 deleterious(0) possibly_damaging(0.823) TCGA-05-4382-01 13 102375185 102375185 G C FGF14 Missense_Mutation p.T252R 0.23 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-05-4382-01 13 103280200 103280200 G T TPP2 Missense_Mutation p.M314I 0.09 tolerated(0.22) benign(0.248) TCGA-05-4382-01 13 103338686 103338686 G A METTL21C Silent p.L164L 0.31 TCGA-05-4382-01 13 103514736 103514736 G T BIVM-ERCC5 Missense_Mutation p.G839W 0.37 deleterious_low_confidence(0.04) probably_damaging(0.96) TCGA-05-4382-01 13 108863343 108863343 G C LIG4 Missense_Mutation p.L92V 0.17 tolerated(0.09) possibly_damaging(0.524) TCGA-05-4382-01 13 111121563 111121563 G T COL4A2 Splice_Site p.X699_splice 0.30 TCGA-05-4382-01 13 115089271 115089271 A T CHAMP1 5'UTR 0.28 TCGA-05-4382-01 13 19753702 19753702 C A TUBA3C Missense_Mutation p.R2L 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-05-4382-01 13 20039416 20039416 G T TPTE2 Missense_Mutation p.L219I 0.09 deleterious(0) probably_damaging(0.941) TCGA-05-4382-01 13 20605470 20605470 G T ZMYM2 Missense_Mutation p.M621I 0.17 tolerated(0.5) benign(0.003) TCGA-05-4382-01 13 23915735 23915735 C A SACS Missense_Mutation p.L760F 0.07 benign(0.249) TCGA-05-4382-01 13 24380111 24380111 C A MIPEP Missense_Mutation p.G609V 0.15 tolerated(0.07) benign(0.213) TCGA-05-4382-01 13 24380112 24380112 C A MIPEP Missense_Mutation p.G609C 0.15 deleterious(0.05) benign(0.228) TCGA-05-4382-01 13 25266991 25266991 G T ATP12A Missense_Mutation p.R451L 0.15 deleterious(0) possibly_damaging(0.618) TCGA-05-4382-01 13 27847369 27847369 A T RASL11A Missense_Mutation p.Q156L 0.14 deleterious(0) probably_damaging(0.967) TCGA-05-4382-01 13 28959104 28959104 G T FLT1 Silent p.T678T 0.29 TCGA-05-4382-01 13 30110070 30110070 C A SLC7A1 Nonsense_Mutation p.E86* 0.26 TCGA-05-4382-01 13 31495227 31495227 C A MEDAG Silent p.V155V 0.11 TCGA-05-4382-01 13 31903674 31903674 C T B3GALTL Missense_Mutation p.H456Y 0.24 tolerated(0.12) possibly_damaging(0.688) TCGA-05-4382-01 13 32360555 32360555 C T RXFP2 Missense_Mutation p.P322L 0.26 deleterious(0.03) benign(0.02) TCGA-05-4382-01 13 32783213 32783213 G T FRY Silent p.L1414L 0.08 TCGA-05-4382-01 13 32805373 32805373 G T FRY Missense_Mutation p.K1821N 0.31 deleterious(0) possibly_damaging(0.898) TCGA-05-4382-01 13 32913803 32913803 G T BRCA2 Missense_Mutation p.G1771C 0.09 deleterious(0.01) benign(0.349) TCGA-05-4382-01 13 36241515 36241515 C - NBEA Frame_Shift_Del p.P2803Lfs*12 0.19 TCGA-05-4382-01 13 36888510 36888510 C A SPG20 Missense_Mutation p.G446V 0.11 deleterious(0) probably_damaging(0.974) TCGA-05-4382-01 13 39435606 39435606 G T FREM2 Nonsense_Mutation p.E2520* 0.18 TCGA-05-4382-01 13 42876961 42876961 G A AKAP11 Missense_Mutation p.S1360N 0.22 tolerated(0.37) benign(0.008) TCGA-05-4382-01 13 43462494 43462494 G T EPSTI1 Silent p.V375V 0.21 TCGA-05-4382-01 13 43930241 43930241 G T ENOX1 Missense_Mutation p.R213S 0.23 deleterious(0) benign(0.194) TCGA-05-4382-01 13 44464305 44464305 G T LACC1 Missense_Mutation p.D397Y 0.07 deleterious(0.01) possibly_damaging(0.793) TCGA-05-4382-01 13 49086998 49086998 T C RCBTB2 Missense_Mutation p.Y128C 0.28 deleterious(0.04) probably_damaging(1) TCGA-05-4382-01 13 52598371 52598371 C G ALG11 Missense_Mutation p.P169A 0.11 deleterious(0) probably_damaging(1) TCGA-05-4382-01 13 52863978 52863978 A G RP11-248G5.8 RNA 0.17 TCGA-05-4382-01 13 53030734 53030734 G T CKAP2 Missense_Mutation p.M49I 0.26 tolerated(1) benign(0) TCGA-05-4382-01 13 61985498 61985498 A T PCDH20 Missense_Mutation p.C912S 0.23 tolerated(0.1) probably_damaging(0.94) TCGA-05-4382-01 13 61985943 61985943 C A PCDH20 Silent p.P763P 0.21 TCGA-05-4382-01 13 67801880 67801880 C A PCDH9 Missense_Mutation p.Q231H 0.20 deleterious(0) probably_damaging(0.961) TCGA-05-4382-01 13 72049909 72049909 G A DACH1 Missense_Mutation p.T650M 0.29 possibly_damaging(0.897) TCGA-05-4382-01 13 77632489 77632489 C A MYCBP2 Missense_Mutation p.G4360V 0.07 probably_damaging(0.998) TCGA-05-4382-01 13 77669711 77669711 C A MYCBP2 Missense_Mutation p.M3289I 0.25 benign(0.004) TCGA-05-4382-01 13 78493460 78493460 G T EDNRB Intron 0.49 TCGA-05-4382-01 13 84453896 84453896 C A SLITRK1 Missense_Mutation p.A583S 0.25 tolerated(0.81) benign(0.031) TCGA-05-4382-01 13 95121216 95121216 G A DCT Missense_Mutation p.R127W 0.07 deleterious(0) probably_damaging(1) TCGA-05-4382-01 13 95364147 95364147 C A SOX21 Nonsense_Mutation p.E53* 0.08 TCGA-05-4382-01 13 99520503 99520503 G T DOCK9 Missense_Mutation p.S1024R 0.11 deleterious(0) possibly_damaging(0.885) TCGA-05-4382-01 14 100118791 100118791 G TT HHIPL1 Frame_Shift_Ins p.V163Cfs*85 0.11 TCGA-05-4382-01 14 101419737 101419737 C T SNORD114-3 RNA 0.06 TCGA-05-4382-01 14 102446176 102446176 C T DYNC1H1 Silent p.I213I 0.18 TCGA-05-4382-01 14 106452700 106452700 C T IGHV1-2 Missense_Mutation p.D108N 0.20 deleterious(0) benign(0.431) TCGA-05-4382-01 14 106452758 106452758 G T IGHV1-2 Silent p.T88T 0.24 TCGA-05-4382-01 14 106733399 106733399 C T IGHV1-24 Silent p.K32K 0.23 TCGA-05-4382-01 14 107078778 107078778 C A IGHV1-58 Missense_Mutation p.V11L 0.18 benign(0.105) TCGA-05-4382-01 14 19377634 19377634 T A OR11H12 Missense_Mutation p.V14D 0.05 tolerated(0.07) benign(0.067) TCGA-05-4382-01 14 20216346 20216346 C T OR4Q3 Missense_Mutation p.P254S 0.06 deleterious(0) probably_damaging(0.952) TCGA-05-4382-01 14 20248994 20248994 C A OR4M1 Silent p.P171P 0.08 TCGA-05-4382-01 14 20344996 20344996 G C OR4K2 Silent p.V190V 0.09 TCGA-05-4382-01 14 20404275 20404275 G A OR4K1 Silent p.A150A 0.10 TCGA-05-4382-01 14 20666364 20666364 C A OR11G2 Nonsense_Mutation p.Y290* 0.14 TCGA-05-4382-01 14 20979139 20979139 C - RNASE10 Frame_Shift_Del p.R171Dfs*5 0.08 TCGA-05-4382-01 14 21109500 21109500 C T OR6S1 Silent p.L117L 0.13 TCGA-05-4382-01 14 22363197 22363197 T C TRAV8-4 Missense_Mutation p.C110R 0.14 deleterious(0.02) probably_damaging(1) TCGA-05-4382-01 14 23512073 23512073 C A PSMB11 Silent p.T213T 0.11 TCGA-05-4382-01 14 23587909 23587909 C A CEBPE Missense_Mutation p.R131L 0.15 tolerated(0.24) probably_damaging(0.972) TCGA-05-4382-01 14 23887540 23887540 C A MYH7 Nonsense_Mutation p.E1350* 0.12 TCGA-05-4382-01 14 24551747 24551747 G T NRL Missense_Mutation p.P104Q 0.16 tolerated(0.14) benign(0.049) TCGA-05-4382-01 14 25101090 25101090 G C GZMB Missense_Mutation p.P192A 0.14 deleterious(0) benign(0.232) TCGA-05-4382-01 14 34263127 34263127 C A NPAS3 Missense_Mutation p.T393K 0.12 deleterious(0) possibly_damaging(0.684) TCGA-05-4382-01 14 35522515 35522515 A G FAM177A1 Missense_Mutation p.E66G 0.15 deleterious(0) probably_damaging(0.997) TCGA-05-4382-01 14 44975581 44975581 T A FSCB Missense_Mutation p.S204C 0.06 deleterious(0) probably_damaging(0.983) TCGA-05-4382-01 14 45495057 45495057 G T FAM179B Missense_Mutation p.V1104L 0.13 tolerated(0.06) possibly_damaging(0.882) TCGA-05-4382-01 14 45644869 45644869 G A FANCM Missense_Mutation p.R971K 0.08 tolerated(0.88) benign(0.001) TCGA-05-4382-01 14 50319518 50319518 G A NEMF 5'UTR 0.22 TCGA-05-4382-01 14 50550444 50550444 G A C14orf183 Silent p.S300S 0.20 TCGA-05-4382-01 14 52781257 52781257 G T PTGER2 5'UTR 0.09 TCGA-05-4382-01 14 53529766 53529766 C A DDHD1 Missense_Mutation p.R554L 0.24 deleterious(0.01) benign(0.021) TCGA-05-4382-01 14 53619576 53619576 C A DDHD1 Missense_Mutation p.D81Y 0.13 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-05-4382-01 14 54418875 54418875 G T BMP4 Missense_Mutation p.S22R 0.26 deleterious(0.03) benign(0.331) TCGA-05-4382-01 14 59114015 59114015 C T DACT1 3'Flank 0.33 TCGA-05-4382-01 14 60213004 60213004 G T RTN1 Missense_Mutation p.P146H 0.06 deleterious(0.03) possibly_damaging(0.625) TCGA-05-4382-01 14 60591258 60591258 A T PCNXL4 Missense_Mutation p.K556I 0.29 deleterious(0.05) benign(0.025) TCGA-05-4382-01 14 62233743 62233743 C A SNAPC1 Missense_Mutation p.P93Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 14 64408830 64408830 G T SYNE2 Missense_Mutation p.G126V 0.26 probably_damaging(1) TCGA-05-4382-01 14 64635688 64635688 A C SYNE2 Silent p.R5667R 0.39 TCGA-05-4382-01 14 64746747 64746747 C T ESR2 Missense_Mutation p.V163I 0.33 deleterious(0) probably_damaging(0.91) TCGA-05-4382-01 14 64916151 64916159 CTTCCTTTA - MTHFD1 Intron 0.33 TCGA-05-4382-01 14 65209851 65209851 G T PLEKHG3 Silent p.G974G 0.34 TCGA-05-4382-01 14 70714430 70714430 T A ADAM21P1 RNA 0.12 TCGA-05-4382-01 14 73219972 73219972 C A DPF3 Nonsense_Mutation p.E101* 0.18 TCGA-05-4382-01 14 74086095 74086095 C G ACOT6 Missense_Mutation p.P59R 0.36 deleterious(0.02) probably_damaging(0.982) TCGA-05-4382-01 14 74086096 74086096 T A ACOT6 Silent p.P59P 0.36 TCGA-05-4382-01 14 75330424 75330424 G T PROX2 Silent p.S38S 0.36 TCGA-05-4382-01 14 79270162 79270162 C T NRXN3 Silent p.N375N 0.34 TCGA-05-4382-01 14 80677676 80677676 G T DIO2 Missense_Mutation p.T47N 0.36 tolerated(0.18) benign(0.297) TCGA-05-4382-01 14 90263537 90263537 C A EFCAB11 3'UTR 0.31 TCGA-05-4382-01 14 92251689 92251689 C A TC2N Silent p.V393V 0.04 TCGA-05-4382-01 14 92480596 92480596 T A TRIP11 Silent p.S383S 0.20 TCGA-05-4382-01 14 94772489 94772489 C T SERPINA6 Silent p.E317E 0.06 TCGA-05-4382-01 14 94915071 94915071 A T SERPINA11 Missense_Mutation p.L14Q 0.10 tolerated(0.08) probably_damaging(0.96) TCGA-05-4382-01 14 96180471 96180471 G A TCL1A 5'UTR 0.18 TCGA-05-4382-01 14 96781496 96781496 C G ATG2B Missense_Mutation p.E1213Q 0.10 tolerated(0.05) probably_damaging(0.942) TCGA-05-4382-01 14 99183589 99183589 T C C14orf177 Missense_Mutation p.V119A 0.13 tolerated_low_confidence(0.31) benign(0.294) TCGA-05-4382-01 15 100332249 100332249 C A AC090825.1 5'Flank 0.18 TCGA-05-4382-01 15 102358680 102358680 T A OR4F15 Nonsense_Mutation p.C97* 0.19 TCGA-05-4382-01 15 23890547 23890547 C A MAGEL2 Missense_Mutation p.E178D 0.19 tolerated(0.09) benign(0.018) TCGA-05-4382-01 15 25307561 25307561 C A SNORD116-5 RNA 0.09 TCGA-05-4382-01 15 25324099 25324099 A T SNORD116-12 3'Flank 0.19 TCGA-05-4382-01 15 25429478 25429478 G T SNORD115-8 RNA 0.10 TCGA-05-4382-01 15 25438363 25438363 C A SNORD115-11 3'Flank 0.20 TCGA-05-4382-01 15 25463558 25463558 G A SNORD115-27 5'Flank 0.26 TCGA-05-4382-01 15 25585362 25585362 T A UBE3A Missense_Mutation p.I793F 0.17 deleterious(0) benign(0.094) TCGA-05-4382-01 15 25940272 25940272 C A ATP10A Missense_Mutation p.D928Y 0.11 deleterious(0.01) benign(0.059) TCGA-05-4382-01 15 26806283 26806283 G T GABRB3 Missense_Mutation p.H292Q 0.19 tolerated(0.14) probably_damaging(1) TCGA-05-4382-01 15 30659662 30659662 A G CHRFAM7A Missense_Mutation p.Y227H 0.06 deleterious(0.03) benign(0.208) TCGA-05-4382-01 15 31320594 31320594 C A TRPM1 Missense_Mutation p.M1095I 0.10 deleterious(0.02) possibly_damaging(0.833) TCGA-05-4382-01 15 31355409 31355409 C A TRPM1 Nonsense_Mutation p.E310* 0.29 TCGA-05-4382-01 15 31779707 31779707 C A OTUD7A Missense_Mutation p.G405C 0.09 deleterious(0) probably_damaging(1) TCGA-05-4382-01 15 33941313 33941313 C A RYR3 Missense_Mutation p.P1340Q 0.19 probably_damaging(1) TCGA-05-4382-01 15 34376541 34376541 C A EMC7 Missense_Mutation p.R241S 0.09 deleterious(0) unknown(0) TCGA-05-4382-01 15 38229100 38229100 G A TMCO5A Missense_Mutation p.E65K 0.35 tolerated(0.11) benign(0.082) TCGA-05-4382-01 15 40659862 40659862 C A DISP2 Missense_Mutation p.L517M 0.20 tolerated(0.71) benign(0.358) TCGA-05-4382-01 15 40751731 40751731 G T BAHD1 Silent p.P356P 0.16 TCGA-05-4382-01 15 41377597 41377597 C T INO80 Nonsense_Mutation p.W281* 0.07 TCGA-05-4382-01 15 41377598 41377598 C A INO80 Missense_Mutation p.W281L 0.07 deleterious(0) probably_damaging(0.99) TCGA-05-4382-01 15 41377614 41377614 G A INO80 Missense_Mutation p.R276C 0.08 deleterious(0) probably_damaging(0.996) TCGA-05-4382-01 15 42529730 42529730 C G TMEM87A Silent p.L256L 0.09 TCGA-05-4382-01 15 45386463 45386463 T A DUOX2 Missense_Mutation p.K1511M 0.15 deleterious(0) probably_damaging(1) TCGA-05-4382-01 15 45387703 45387703 G A DUOX2 Missense_Mutation p.P1391S 0.11 deleterious(0) possibly_damaging(0.825) TCGA-05-4382-01 15 45400285 45400285 G T DUOX2 Silent p.R512R 0.12 TCGA-05-4382-01 15 48056062 48056062 G T SEMA6D Missense_Mutation p.V255L 0.11 deleterious(0) probably_damaging(0.997) TCGA-05-4382-01 15 50546735 50546735 A T HDC Missense_Mutation p.S190T 0.08 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 15 51031986 51031986 C A SPPL2A Missense_Mutation p.M208I 0.12 tolerated(0.19) benign(0.002) TCGA-05-4382-01 15 54306042 54306042 T A UNC13C Missense_Mutation p.H314Q 0.20 tolerated_low_confidence(0.26) benign(0.006) TCGA-05-4382-01 15 54914548 54914548 G T UNC13C Missense_Mutation p.G2044C 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-05-4382-01 15 56032678 56032678 C A PRTG Missense_Mutation p.G100V 0.24 tolerated(0.1) benign(0.309) TCGA-05-4382-01 15 58257929 58257929 C A ALDH1A2 Missense_Mutation p.A299S 0.08 tolerated(0.06) probably_damaging(0.998) TCGA-05-4382-01 15 59470690 59470690 C T MYO1E Missense_Mutation p.E651K 0.11 tolerated(0.33) possibly_damaging(0.832) TCGA-05-4382-01 15 59494607 59494607 C A MYO1E Splice_Site p.X539_splice 0.10 TCGA-05-4382-01 15 62320619 62320619 C A VPS13C Missense_Mutation p.G129V 0.16 deleterious(0) possibly_damaging(0.806) TCGA-05-4382-01 15 62320620 62320620 C A VPS13C Splice_Site p.X129_splice 0.15 TCGA-05-4382-01 15 65041694 65041694 T A RBPMS2 Splice_Site p.X69_splice 0.15 TCGA-05-4382-01 15 65351719 65351719 C T RASL12 Silent p.Q66Q 0.13 TCGA-05-4382-01 15 65686760 65686760 A - IGDCC4 Frame_Shift_Del p.L568Wfs*21 0.09 TCGA-05-4382-01 15 65688242 65688242 C A IGDCC4 Silent p.S419S 0.10 TCGA-05-4382-01 15 65983385 65983385 C T DENND4A Missense_Mutation p.A1182T 0.10 tolerated(0.47) benign(0.001) TCGA-05-4382-01 15 65993515 65993515 T G DENND4A Missense_Mutation p.T859P 0.11 tolerated(0.41) benign(0.008) TCGA-05-4382-01 15 68643001 68643001 C G ITGA11 Missense_Mutation p.L338F 0.10 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 15 75116016 75116016 G A LMAN1L Missense_Mutation p.G439D 0.13 tolerated(0.25) benign(0.085) TCGA-05-4382-01 15 75648219 75648219 C T MAN2C1 3'UTR 0.10 TCGA-05-4382-01 15 76254245 76254245 T C NRG4 Missense_Mutation p.S59G 0.12 tolerated(0.37) benign(0.019) TCGA-05-4382-01 15 77907381 77907381 G T LINGO1 Missense_Mutation p.R290S 0.14 tolerated(0.3) possibly_damaging(0.455) TCGA-05-4382-01 15 78461455 78461455 A G IDH3A 3'UTR 0.14 TCGA-05-4382-01 15 78584957 78584957 C A WDR61 Splice_Site p.X107_splice 0.12 TCGA-05-4382-01 15 78764260 78764260 G T IREB2 Missense_Mutation p.G293W 0.11 deleterious(0) probably_damaging(1) TCGA-05-4382-01 15 78917435 78917435 C A CHRNB4 3'UTR 0.11 TCGA-05-4382-01 15 79067002 79067002 C G ADAMTS7 Missense_Mutation p.G614R 0.08 deleterious(0) probably_damaging(0.946) TCGA-05-4382-01 15 83931751 83931751 G T BNC1 Missense_Mutation p.T751K 0.18 deleterious(0) probably_damaging(0.938) TCGA-05-4382-01 15 86940755 86940755 C T AGBL1 Missense_Mutation p.P799S 0.11 deleterious(0) probably_damaging(1) TCGA-05-4382-01 15 87531247 87531247 A T AGBL1 Missense_Mutation p.H1038L 0.16 unknown(0) TCGA-05-4382-01 15 90347593 90347593 C T ANPEP Nonsense_Mutation p.W357* 0.14 TCGA-05-4382-01 15 90349243 90349243 G A ANPEP Missense_Mutation p.A191V 0.10 deleterious(0.03) benign(0.021) TCGA-05-4382-01 15 91423004 91423004 G T FURIN Missense_Mutation p.V420L 0.18 deleterious(0.01) possibly_damaging(0.83) TCGA-05-4382-01 15 92981651 92981651 G C ST8SIA2 Missense_Mutation p.G120A 0.10 probably_damaging(0.999) TCGA-05-4382-01 16 10574812 10574812 T C ATF7IP2 Silent p.N542N 0.16 TCGA-05-4382-01 16 17221697 17221697 T A XYLT1 Silent p.P683P 0.05 TCGA-05-4382-01 16 1748976 1748976 A T HN1L Nonsense_Mutation p.K184* 0.28 TCGA-05-4382-01 16 20043324 20043324 G T GPR139 Silent p.I265I 0.33 TCGA-05-4382-01 16 20352561 20352561 C T UMOD Missense_Mutation p.V477M 0.34 deleterious(0) probably_damaging(0.997) TCGA-05-4382-01 16 20362003 20362003 G A UMOD Silent p.I19I 0.28 TCGA-05-4382-01 16 20386220 20386220 G T PDILT Missense_Mutation p.T202K 0.05 deleterious(0.01) probably_damaging(0.986) TCGA-05-4382-01 16 20471598 20471598 G T ACSM2A Missense_Mutation p.W54C 0.16 deleterious(0) probably_damaging(1) TCGA-05-4382-01 16 20498058 20498058 G T ACSM2A 3'UTR 0.32 TCGA-05-4382-01 16 20559428 20559428 G T ACSM2B Missense_Mutation p.Q352K 0.30 tolerated(0.24) benign(0.011) TCGA-05-4382-01 16 20682925 20682925 C A ACSM1 Missense_Mutation p.S227I 0.11 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 16 20833145 20833145 G T AC004381.6 Missense_Mutation p.K179N 0.29 deleterious(0) probably_damaging(0.98) TCGA-05-4382-01 16 21038383 21038383 C T DNAH3 Missense_Mutation p.D1836N 0.16 deleterious(0.03) possibly_damaging(0.873) TCGA-05-4382-01 16 21217083 21217083 C T ZP2 Missense_Mutation p.R166Q 0.17 tolerated(0.53) benign(0.003) TCGA-05-4382-01 16 2122925 2122925 G T TSC2 Missense_Mutation p.V766L 0.11 deleterious(0) benign(0.228) TCGA-05-4382-01 16 21726422 21726422 C A OTOA Silent p.S479S 0.05 TCGA-05-4382-01 16 21747674 21747675 - A OTOA Frame_Shift_Ins p.S799Kfs*3 0.21 TCGA-05-4382-01 16 23197833 23197833 G T SCNN1G Missense_Mutation p.V81F 0.08 deleterious(0) possibly_damaging(0.853) TCGA-05-4382-01 16 24373044 24373044 G A CACNG3 Missense_Mutation p.D270N 0.19 deleterious(0.01) benign(0.437) TCGA-05-4382-01 16 24801619 24801619 G T TNRC6A Missense_Mutation p.Q552H 0.08 deleterious(0.02) possibly_damaging(0.847) TCGA-05-4382-01 16 24888676 24888676 C A SLC5A11 Missense_Mutation p.T192K 0.05 deleterious(0) probably_damaging(1) TCGA-05-4382-01 16 27373906 27373906 C T IL4R Silent p.F411F 0.12 TCGA-05-4382-01 16 27460382 27460382 G T IL21R Missense_Mutation p.W465C 0.33 deleterious(0.02) probably_damaging(0.986) TCGA-05-4382-01 16 27476638 27476638 G A GTF3C1 Silent p.F1766F 0.13 TCGA-05-4382-01 16 2812973 2812973 G T SRRM2 Missense_Mutation p.S815I 0.06 unknown(0) TCGA-05-4382-01 16 28603402 28603402 C T SULT1A2 Missense_Mutation p.D279N 0.23 tolerated(0.13) benign(0.179) TCGA-05-4382-01 16 29675184 29675184 C A SPN Nonsense_Mutation p.Y45* 0.21 TCGA-05-4382-01 16 29690494 29690494 C A QPRT 5'UTR 0.05 TCGA-05-4382-01 16 29884746 29884746 T A SEZ6L2 Missense_Mutation p.Y768F 0.28 tolerated(0.44) benign(0.074) TCGA-05-4382-01 16 29998855 29998855 G T TAOK2 Missense_Mutation p.V1088F 0.26 deleterious_low_confidence(0.03) benign(0.011) TCGA-05-4382-01 16 30021412 30021412 C T DOC2A Silent p.G44G 0.23 TCGA-05-4382-01 16 30507518 30507518 G T ITGAL Missense_Mutation p.G535V 0.26 deleterious(0.03) possibly_damaging(0.707) TCGA-05-4382-01 16 30510525 30510525 C A ITGAL Missense_Mutation p.Q655K 0.25 tolerated(0.06) benign(0.102) TCGA-05-4382-01 16 30724540 30724540 G A SRCAP Silent p.K714K 0.23 TCGA-05-4382-01 16 31157193 31157193 G A PRSS36 Missense_Mutation p.P213S 0.26 tolerated(0.07) possibly_damaging(0.908) TCGA-05-4382-01 16 31374570 31374570 G T ITGAX Missense_Mutation p.G529W 0.19 deleterious(0) probably_damaging(1) TCGA-05-4382-01 16 32077427 32077427 T A IGHV3OR16-9 Silent p.P14P 0.13 TCGA-05-4382-01 16 4165292 4165292 G A ADCY9 Missense_Mutation p.S51F 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-05-4382-01 16 48130772 48130772 A T ABCC12 Missense_Mutation p.L1027Q 0.09 deleterious(0) probably_damaging(0.967) TCGA-05-4382-01 16 48162380 48162380 A T ABCC12 Missense_Mutation p.V502E 0.16 tolerated(0.44) benign(0.002) TCGA-05-4382-01 16 48162469 48162469 G T ABCC12 Nonsense_Mutation p.Y472* 0.09 TCGA-05-4382-01 16 4933740 4933740 C T PPL Missense_Mutation p.R1639H 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-05-4382-01 16 49433192 49433192 A T C16orf78 3'UTR 0.12 TCGA-05-4382-01 16 49670420 49670420 C A ZNF423 Silent p.A881A 0.08 TCGA-05-4382-01 16 511444 511444 G T RAB11FIP3 Missense_Mutation p.G252V 0.07 deleterious(0.03) probably_damaging(0.967) TCGA-05-4382-01 16 53331002 53331002 G T CHD9 Missense_Mutation p.S1882I 0.08 probably_damaging(0.999) TCGA-05-4382-01 16 55525859 55525859 G T MMP2 Nonsense_Mutation p.E443* 0.10 TCGA-05-4382-01 16 55530859 55530859 G A MMP2 Silent p.T498T 0.13 TCGA-05-4382-01 16 55562356 55562356 G T LPCAT2 Missense_Mutation p.A127S 0.14 tolerated(0.37) benign(0.001) TCGA-05-4382-01 16 56388845 56388845 C A RP11-441F2.5 5'Flank 0.12 TCGA-05-4382-01 16 57695812 57695812 C G GPR56 Missense_Mutation p.S629C 0.08 deleterious(0) probably_damaging(0.994) TCGA-05-4382-01 16 57697456 57697456 C T GPR56 Missense_Mutation p.P682S 0.14 deleterious(0.01) probably_damaging(0.985) TCGA-05-4382-01 16 58148824 58148824 T C C16orf80 Missense_Mutation p.I156V 0.13 tolerated(0.7) benign(0.014) TCGA-05-4382-01 16 58541757 58541757 C A NDRG4 Silent p.A274A 0.11 TCGA-05-4382-01 16 58572800 58572800 C A CNOT1 Missense_Mutation p.D1671Y 0.12 tolerated(0.08) possibly_damaging(0.781) TCGA-05-4382-01 16 61851501 61851501 C G CDH8 Missense_Mutation p.E387Q 0.11 deleterious(0) possibly_damaging(0.761) TCGA-05-4382-01 16 62055384 62055384 C T CDH8 5'UTR 0.14 TCGA-05-4382-01 16 65005524 65005524 C T CDH11 Missense_Mutation p.E534K 0.10 deleterious(0.03) benign(0.265) TCGA-05-4382-01 16 67861260 67861260 C A TSNAXIP1 Nonsense_Mutation p.Y537* 0.10 TCGA-05-4382-01 16 68248276 68248276 G C NFATC3 Intron 0.10 TCGA-05-4382-01 16 70154618 70154618 G T PDPR Missense_Mutation p.G75C 0.12 deleterious(0) probably_damaging(1) TCGA-05-4382-01 16 70900088 70900088 G T HYDIN Missense_Mutation p.Q3819K 0.15 possibly_damaging(0.486) TCGA-05-4382-01 16 71015470 71015470 C A HYDIN Missense_Mutation p.G1445V 0.15 probably_damaging(0.998) TCGA-05-4382-01 16 71697944 71697944 C A PHLPP2 Nonsense_Mutation p.G615* 0.16 TCGA-05-4382-01 16 7382881 7382881 C T RBFOX1 5'UTR 0.24 TCGA-05-4382-01 16 74662537 74662537 C T RFWD3 Missense_Mutation p.M594I 0.08 tolerated(0.87) benign(0) TCGA-05-4382-01 16 74976635 74976635 C T WDR59 Splice_Site p.X178_splice 0.24 TCGA-05-4382-01 16 75282017 75282018 - AGA BCAR1 Intron 0.09 TCGA-05-4382-01 16 75576504 75576504 C A TMEM231 Missense_Mutation p.R249S 0.15 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 16 77359870 77359870 G T ADAMTS18 Missense_Mutation p.P642H 0.11 deleterious(0.02) possibly_damaging(0.895) TCGA-05-4382-01 16 77896678 77896678 C G VAT1L Missense_Mutation p.P205A 0.12 tolerated(0.12) possibly_damaging(0.495) TCGA-05-4382-01 16 80638384 80638384 C T CDYL2 Silent p.V474V 0.09 TCGA-05-4382-01 16 83992864 83992864 G T OSGIN1 Splice_Site p.X23_splice 0.08 TCGA-05-4382-01 16 84189346 84189346 C A DNAAF1 Missense_Mutation p.P245T 0.23 deleterious(0) possibly_damaging(0.677) TCGA-05-4382-01 16 85112585 85112585 C T KIAA0513 Missense_Mutation p.T293M 0.15 tolerated(0.39) benign(0.297) TCGA-05-4382-01 16 85133804 85133804 T A FAM92B Missense_Mutation p.T232S 0.12 tolerated(0.67) benign(0.007) TCGA-05-4382-01 16 85839263 85839263 G T COX4I1 Intron 0.12 TCGA-05-4382-01 16 87677997 87677997 C T JPH3 Silent p.T172T 0.14 TCGA-05-4382-01 16 87678562 87678562 G T JPH3 Nonsense_Mutation p.E361* 0.14 TCGA-05-4382-01 16 89246675 89246675 A T CDH15 Missense_Mutation p.E90V 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-05-4382-01 16 9004656 9004656 T A USP7 Silent p.A369A 0.18 TCGA-05-4382-01 16 9857738 9857738 C A GRIN2A Missense_Mutation p.M1221I 0.04 deleterious(0.02) benign(0.005) TCGA-05-4382-01 16 9857801 9857801 G T GRIN2A Missense_Mutation p.H1200Q 0.18 tolerated(0.31) benign(0.063) TCGA-05-4382-01 16 9858253 9858255 TAG AA GRIN2A Frame_Shift_Del p.P1049Lfs*58 0.16 TCGA-05-4382-01 17 10209868 10209868 G T MYH13 Missense_Mutation p.Q1792K 0.24 deleterious(0.05) benign(0.212) TCGA-05-4382-01 17 10409387 10409387 C A MYH1 Missense_Mutation p.L666F 0.23 deleterious(0) possibly_damaging(0.865) TCGA-05-4382-01 17 10411224 10411224 C G MYH1 Missense_Mutation p.Q649H 0.07 deleterious(0.01) possibly_damaging(0.749) TCGA-05-4382-01 17 10547773 10547773 C T MYH3 Silent p.K435K 0.25 TCGA-05-4382-01 17 11593083 11593083 G T DNAH9 Missense_Mutation p.S1315I 0.22 benign(0.098) TCGA-05-4382-01 17 11738156 11738157 CT A DNAH9 Frame_Shift_Del p.L3150Rfs*18 0.21 TCGA-05-4382-01 17 12846933 12846933 G T ARHGAP44 Missense_Mutation p.R227M 0.23 deleterious(0.01) possibly_damaging(0.771) TCGA-05-4382-01 17 12915089 12915089 C A ELAC2 Missense_Mutation p.R190S 0.08 tolerated(0.59) benign(0.002) TCGA-05-4382-01 17 15989745 15989745 C A NCOR1 Missense_Mutation p.A1010S 0.47 benign(0.064) TCGA-05-4382-01 17 16330853 16330853 G T TRPV2 Missense_Mutation p.V448L 0.51 tolerated(0.57) benign(0.005) TCGA-05-4382-01 17 18675739 18675739 C T FBXW10 Missense_Mutation p.T674I 0.29 deleterious(0) probably_damaging(0.931) TCGA-05-4382-01 17 21319454 21319454 C A KCNJ12 Missense_Mutation p.P267H 0.09 deleterious(0) probably_damaging(1) TCGA-05-4382-01 17 21477603 21477603 G C AC138710.1 5'Flank 0.31 TCGA-05-4382-01 17 2604050 2604050 C A CLUH Silent p.A327A 0.34 TCGA-05-4382-01 17 263129 263129 G A C17orf97 Silent p.R165R 0.16 TCGA-05-4382-01 17 28435016 28435016 C G EFCAB5 Missense_Mutation p.P1496A 0.30 deleterious_low_confidence(0.01) benign(0.384) TCGA-05-4382-01 17 30806346 30806346 A T PSMD11 Missense_Mutation p.L330F 0.10 deleterious(0) probably_damaging(0.99) TCGA-05-4382-01 17 31415952 31415952 G T ASIC2 Missense_Mutation p.P306T 0.34 deleterious(0.01) probably_damaging(1) TCGA-05-4382-01 17 32964379 32964379 G C TMEM132E Missense_Mutation p.A695P 0.20 deleterious(0) possibly_damaging(0.827) TCGA-05-4382-01 17 33289497 33289497 G T ZNF830 Missense_Mutation p.Q304H 0.06 deleterious(0) probably_damaging(0.995) TCGA-05-4382-01 17 33428230 33428230 G T RAD51L3-RFFL Missense_Mutation p.S139Y 0.19 deleterious(0) possibly_damaging(0.705) TCGA-05-4382-01 17 34263782 34263782 G A LYZL6 Silent p.S118S 0.41 TCGA-05-4382-01 17 34266291 34266291 G T LYZL6 Missense_Mutation p.R24S 0.40 deleterious(0) probably_damaging(0.95) TCGA-05-4382-01 17 38953456 38953456 C A KRT28 Silent p.A256A 0.25 TCGA-05-4382-01 17 39316800 39316800 G A KRTAP4-4 Silent p.P48P 0.37 TCGA-05-4382-01 17 39775829 39775829 C A KRT17 3'UTR 0.05 TCGA-05-4382-01 17 40766531 40766531 G C TUBG1 Missense_Mutation p.Q338H 0.29 tolerated(0.18) possibly_damaging(0.907) TCGA-05-4382-01 17 40997103 40997103 G T AOC2 Nonsense_Mutation p.E154* 0.34 TCGA-05-4382-01 17 41246314 41246314 C A BRCA1 Missense_Mutation p.V412L 0.05 deleterious(0.01) benign(0.016) TCGA-05-4382-01 17 41345412 41345412 G T NBR1 Missense_Mutation p.K427N 0.25 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 17 42837203 42837203 G T ADAM11 Missense_Mutation p.G59W 0.30 deleterious(0) possibly_damaging(0.906) TCGA-05-4382-01 17 42882703 42882703 C A GJC1 Missense_Mutation p.K161N 0.04 deleterious(0) probably_damaging(0.981) TCGA-05-4382-01 17 43910880 43910880 C A CRHR1 Silent p.T331T 0.25 TCGA-05-4382-01 17 4443107 4443107 G A MYBBP1A Missense_Mutation p.P1197L 0.31 deleterious(0) possibly_damaging(0.897) TCGA-05-4382-01 17 44950057 44950057 C G WNT9B Silent p.L84L 0.26 TCGA-05-4382-01 17 45206824 45206824 C A CDC27 Missense_Mutation p.D705Y 0.34 deleterious(0) probably_damaging(0.986) TCGA-05-4382-01 17 45993627 45993627 C A SP2 Missense_Mutation p.P64T 0.03 tolerated(0.12) benign(0.27) TCGA-05-4382-01 17 56357346 56357346 G C MPO Missense_Mutation p.A93G 0.35 tolerated(0.18) possibly_damaging(0.501) TCGA-05-4382-01 17 56729334 56729334 G T TEX14 Missense_Mutation p.P10H 0.43 deleterious(0) probably_damaging(1) TCGA-05-4382-01 17 59820497 59820497 T A BRIP1 Splice_Site p.X753_splice 0.30 TCGA-05-4382-01 17 60342471 60342471 G A TBC1D3P2 3'Flank 0.12 TCGA-05-4382-01 17 61558508 61558508 G A ACE Missense_Mutation p.D302N 0.09 tolerated(0.58) benign(0.012) TCGA-05-4382-01 17 61568643 61568643 C G ACE Missense_Mutation p.P938R 0.09 tolerated(0.09) benign(0.06) TCGA-05-4382-01 17 61621389 61621389 G T KCNH6 Silent p.L750L 0.21 TCGA-05-4382-01 17 61972372 61972372 A T CSH1 3'UTR 0.07 TCGA-05-4382-01 17 61994595 61994595 G T GH1 3'UTR 0.35 TCGA-05-4382-01 17 62025295 62025295 C A SCN4A Silent p.V1091V 0.34 TCGA-05-4382-01 17 6554904 6554904 C A MED31 5'UTR 0.15 TCGA-05-4382-01 17 65940369 65940369 A T BPTF Missense_Mutation p.Q2194L 0.36 probably_damaging(0.996) TCGA-05-4382-01 17 66267479 66267479 G T SLC16A6 Silent p.P274P 0.05 TCGA-05-4382-01 17 66980199 66980199 C A ABCA9 Silent p.L1499L 0.32 TCGA-05-4382-01 17 6929781 6929781 G T BCL6B Nonsense_Mutation p.E299* 0.24 TCGA-05-4382-01 17 70119859 70119859 G T SOX9 Missense_Mutation p.E287D 0.05 tolerated(0.33) benign(0.401) TCGA-05-4382-01 17 71281533 71281533 C A CDC42EP4 3'UTR 0.10 TCGA-05-4382-01 17 7158125 7158125 G A ELP5 Intron 0.14 TCGA-05-4382-01 17 72608712 72608712 G T CD300E 3'UTR 0.30 TCGA-05-4382-01 17 7348809 7348809 G T CHRNB1 Intron 0.19 TCGA-05-4382-01 17 73571096 73571096 G T LLGL2 3'UTR 0.35 TCGA-05-4382-01 17 7577123 7577123 A C TP53 Missense_Mutation p.V272G 0.21 deleterious(0) probably_damaging(1) TCGA-05-4382-01 17 76202119 76202119 C T AFMID Silent p.N296N 0.26 TCGA-05-4382-01 17 76506558 76506558 G T DNAH17 Missense_Mutation p.L1378M 0.06 probably_damaging(0.991) TCGA-05-4382-01 17 7722377 7722377 G C DNAH2 Missense_Mutation p.R3604P 0.22 probably_damaging(0.998) TCGA-05-4382-01 17 77768754 77768754 C A CBX8 Missense_Mutation p.V284L 0.24 tolerated(0.83) benign(0.097) TCGA-05-4382-01 17 78328162 78328162 G T RNF213 Intron 0.41 TCGA-05-4382-01 17 79166536 79166536 C T AZI1 Missense_Mutation p.R810K 0.11 tolerated(0.06) probably_damaging(0.998) TCGA-05-4382-01 17 79177294 79177294 T C AZI1 Missense_Mutation p.N210S 0.30 tolerated(0.06) benign(0.426) TCGA-05-4382-01 17 9604947 9604947 G T USP43 Silent p.P647P 0.10 TCGA-05-4382-01 17 9830018 9830018 G T GAS7 Nonsense_Mutation p.C318* 0.19 TCGA-05-4382-01 18 10548349 10548349 A G NAPG Silent p.A213A 0.13 TCGA-05-4382-01 18 14784345 14784345 G T ANKRD30B Missense_Mutation p.E527D 0.10 tolerated_low_confidence(0.23) benign(0.013) TCGA-05-4382-01 18 22806833 22806833 C A ZNF521 Missense_Mutation p.G350V 0.16 tolerated_low_confidence(0.2) probably_damaging(0.974) TCGA-05-4382-01 18 22807008 22807008 C A ZNF521 Nonsense_Mutation p.E292* 0.10 TCGA-05-4382-01 18 22807248 22807248 G T ZNF521 Missense_Mutation p.L212M 0.13 deleterious(0.04) probably_damaging(0.987) TCGA-05-4382-01 18 25532249 25532249 A T CDH2 Missense_Mutation p.S863R 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-05-4382-01 18 28662236 28662236 T A DSC2 Nonsense_Mutation p.K411* 0.19 TCGA-05-4382-01 18 2885108 2885108 G A EMILIN2 Missense_Mutation p.R135Q 0.06 tolerated(0.17) benign(0.037) TCGA-05-4382-01 18 28916564 28916564 C T DSG1 Missense_Mutation p.S418L 0.22 deleterious(0) benign(0.065) TCGA-05-4382-01 18 28918286 28918286 T C DSG1 Missense_Mutation p.M425T 0.15 tolerated(0.11) benign(0.046) TCGA-05-4382-01 18 29055792 29055792 G T DSG3 Missense_Mutation p.A857S 0.11 deleterious(0) probably_damaging(0.958) TCGA-05-4382-01 18 29125888 29125888 A T DSG2 Missense_Mutation p.I847L 0.16 tolerated(0.42) benign(0.001) TCGA-05-4382-01 18 29125986 29125986 G C DSG2 Missense_Mutation p.E879D 0.17 tolerated(0.06) benign(0.025) TCGA-05-4382-01 18 30926193 30926193 G A CCDC178 Missense_Mutation p.P214S 0.10 deleterious(0) probably_damaging(1) TCGA-05-4382-01 18 30928890 30928890 T A CCDC178 Missense_Mutation p.T141S 0.17 tolerated(0.83) benign(0.019) TCGA-05-4382-01 18 31318499 31318499 C A ASXL3 Missense_Mutation p.N377K 0.11 possibly_damaging(0.662) TCGA-05-4382-01 18 31325263 31325263 A T ASXL3 Silent p.P1817P 0.12 TCGA-05-4382-01 18 32459515 32459515 A T DTNA Missense_Mutation p.E578V 0.15 deleterious(0.01) benign(0.013) TCGA-05-4382-01 18 33724961 33724961 G T ELP2 Missense_Mutation p.V351L 0.14 deleterious(0) probably_damaging(0.941) TCGA-05-4382-01 18 40853820 40853820 G T SYT4 Missense_Mutation p.P192T 0.10 deleterious(0) probably_damaging(1) TCGA-05-4382-01 18 42643085 42643085 G C SETBP1 Missense_Mutation p.E1405Q 0.17 deleterious(0) probably_damaging(0.997) TCGA-05-4382-01 18 42643652 42643652 G T SETBP1 Missense_Mutation p.V1594F 0.20 tolerated_low_confidence(0.15) benign(0.073) TCGA-05-4382-01 18 43249357 43249357 T C SLC14A2 Missense_Mutation p.L708S 0.08 deleterious(0) probably_damaging(1) TCGA-05-4382-01 18 43698210 43698210 C T HAUS1 Missense_Mutation p.T90I 0.10 tolerated(0.18) benign(0.003) TCGA-05-4382-01 18 44260275 44260275 G T ST8SIA5 Silent p.R287R 0.20 TCGA-05-4382-01 18 45368312 45368312 C A SMAD2 Silent p.T430T 0.07 TCGA-05-4382-01 18 51904651 51904651 C A C18orf54 3'UTR 0.22 TCGA-05-4382-01 18 54385314 54385314 C G WDR7 Missense_Mutation p.I566M 0.12 deleterious(0) probably_damaging(0.933) TCGA-05-4382-01 18 59203752 59203752 C A CDH20 Missense_Mutation p.P433H 0.10 tolerated(0.16) benign(0.015) TCGA-05-4382-01 18 59206354 59206354 C A CDH20 Silent p.V502V 0.14 TCGA-05-4382-01 18 59483405 59483405 C A RNF152 Missense_Mutation p.G98W 0.23 deleterious(0.01) probably_damaging(1) TCGA-05-4382-01 18 60241759 60241759 A G ZCCHC2 Silent p.L815L 0.11 TCGA-05-4382-01 18 60506077 60506077 C T PHLPP1 Nonsense_Mutation p.Q612* 0.19 TCGA-05-4382-01 18 60609095 60609095 C - PHLPP1 Frame_Shift_Del p.H1037Ifs*2 0.17 TCGA-05-4382-01 18 61234147 61234147 C T SERPINB12 Missense_Mutation p.S374F 0.13 tolerated(0.49) benign(0.051) TCGA-05-4382-01 18 61471509 61471509 G C SERPINB7 Missense_Mutation p.W261C 0.10 deleterious(0.03) probably_damaging(1) TCGA-05-4382-01 18 63489376 63489378 GTC TGTT CDH7 Frame_Shift_Ins p.V229Cfs*26 0.19 TCGA-05-4382-01 18 6961756 6961756 G T LAMA1 Silent p.P2485P 0.13 TCGA-05-4382-01 18 6966160 6966160 C A LAMA1 Missense_Mutation p.G2346C 0.11 deleterious(0) possibly_damaging(0.811) TCGA-05-4382-01 18 7079972 7079972 A G LAMA1 Splice_Site p.X115_splice 0.25 TCGA-05-4382-01 18 74778254 74778254 C A MBP Nonsense_Mutation p.G47* 0.16 TCGA-05-4382-01 18 76753279 76753279 G T SALL3 Missense_Mutation p.G430C 0.07 deleterious(0) probably_damaging(1) TCGA-05-4382-01 18 76757283 76757283 G T SALL3 Silent p.T1288T 0.08 TCGA-05-4382-01 18 8824925 8824925 G T SOGA2 Silent p.G1139G 0.18 TCGA-05-4382-01 19 10197714 10197714 G T C19orf66 Missense_Mutation p.R44L 0.14 deleterious(0.04) probably_damaging(0.992) TCGA-05-4382-01 19 12060814 12060814 A G ZNF700 Missense_Mutation p.K659E 0.11 tolerated(0.27) benign(0.044) TCGA-05-4382-01 19 12087964 12087964 A T ZNF763 Missense_Mutation p.N42Y 0.16 deleterious(0) probably_damaging(0.955) TCGA-05-4382-01 19 14508601 14508601 G C CD97 Missense_Mutation p.D253H 0.09 deleterious(0.05) possibly_damaging(0.607) TCGA-05-4382-01 19 14765950 14765950 A T EMR3 Missense_Mutation p.S141T 0.06 tolerated(0.31) benign(0.394) TCGA-05-4382-01 19 15651462 15651462 C G CYP4F22 Silent p.A291A 0.07 TCGA-05-4382-01 19 15651463 15651463 G A CYP4F22 Missense_Mutation p.E292K 0.07 tolerated(0.13) benign(0.01) TCGA-05-4382-01 19 1599497 1599497 C A UQCR11 Missense_Mutation p.W38L 0.14 deleterious(0) probably_damaging(1) TCGA-05-4382-01 19 16338502 16338502 G T AP1M1 Splice_Site p.X284_splice 0.12 TCGA-05-4382-01 19 17003877 17003877 C A CPAMD8 3'UTR 0.14 TCGA-05-4382-01 19 17339818 17339818 C G OCEL1 3'UTR 0.14 TCGA-05-4382-01 19 17756803 17756803 G A UNC13A Missense_Mutation p.P721L 0.14 deleterious(0) probably_damaging(1) TCGA-05-4382-01 19 17922691 17922691 C A B3GNT3 Missense_Mutation p.F293L 0.05 tolerated(0.63) benign(0.036) TCGA-05-4382-01 19 17937597 17937597 G A JAK3 Silent p.F1110F 0.13 TCGA-05-4382-01 19 17973501 17973501 C T RPL18A Intron 0.09 TCGA-05-4382-01 19 18329183 18329183 G T PDE4C Silent p.A397A 0.21 TCGA-05-4382-01 19 18329184 18329184 G T PDE4C Missense_Mutation p.A397D 0.21 deleterious(0.01) possibly_damaging(0.862) TCGA-05-4382-01 19 18731227 18731227 C T TMEM59L Silent p.L304L 0.19 TCGA-05-4382-01 19 19655944 19655944 G T CILP2 Missense_Mutation p.A864S 0.22 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 19 19656806 19656806 G A CILP2 Missense_Mutation p.R1151Q 0.19 tolerated_low_confidence(0.33) benign(0.002) TCGA-05-4382-01 19 20308560 20308560 G A ZNF486 Silent p.E347E 0.11 TCGA-05-4382-01 19 21366002 21366002 G C ZNF431 Missense_Mutation p.R299P 0.10 tolerated(0.1) possibly_damaging(0.858) TCGA-05-4382-01 19 22363680 22363680 G C ZNF676 Missense_Mutation p.P280R 0.09 deleterious(0.04) benign(0.022) TCGA-05-4382-01 19 22847330 22847330 G - ZNF492 Frame_Shift_Del p.G287Afs*15 0.17 TCGA-05-4382-01 19 22939970 22939970 T A ZNF99 3'Flank 0.18 TCGA-05-4382-01 19 22940130 22940130 C G ZNF99 Missense_Mutation p.E861Q 0.09 tolerated(0.58) benign(0.002) TCGA-05-4382-01 19 30099608 30099608 G T POP4 Missense_Mutation p.D18Y 0.10 deleterious(0.02) possibly_damaging(0.674) TCGA-05-4382-01 19 30935448 30935448 G T ZNF536 Nonsense_Mutation p.E327* 0.17 TCGA-05-4382-01 19 31039574 31039574 G T ZNF536 Missense_Mutation p.M1016I 0.08 deleterious(0) probably_damaging(0.943) TCGA-05-4382-01 19 31039763 31039763 G T ZNF536 Missense_Mutation p.M1079I 0.11 tolerated_low_confidence(0.49) benign(0) TCGA-05-4382-01 19 31769068 31769068 C T TSHZ3 Nonsense_Mutation p.W544* 0.10 TCGA-05-4382-01 19 33098606 33098606 C T ANKRD27 Missense_Mutation p.A770T 0.18 tolerated(0.08) possibly_damaging(0.798) TCGA-05-4382-01 19 34884875 34884875 G T GPI Silent p.L333L 0.31 TCGA-05-4382-01 19 34951384 34951384 G T UBA2 Nonsense_Mutation p.E471* 0.36 TCGA-05-4382-01 19 34957912 34957912 C G UBA2 Silent p.T578T 0.08 TCGA-05-4382-01 19 35451811 35451811 C A ZNF792 Missense_Mutation p.D41Y 0.21 deleterious(0) probably_damaging(0.996) TCGA-05-4382-01 19 35451812 35451812 G A ZNF792 Silent p.C40C 0.20 TCGA-05-4382-01 19 36027810 36027810 C A GAPDHS Missense_Mutation p.P55T 0.10 deleterious_low_confidence(0.04) benign(0.001) TCGA-05-4382-01 19 36027811 36027811 C A GAPDHS Missense_Mutation p.P55Q 0.11 deleterious_low_confidence(0.01) benign(0.006) TCGA-05-4382-01 19 36050770 36050770 G A ATP4A Silent p.A331A 0.12 TCGA-05-4382-01 19 36350479 36350479 C A KIRREL2 Silent p.R207R 0.26 TCGA-05-4382-01 19 36352122 36352122 G T KIRREL2 Silent p.R385R 0.09 TCGA-05-4382-01 19 36394806 36394806 G T HCST Splice_Site p.X81_splice 0.15 TCGA-05-4382-01 19 36517911 36517911 C T CLIP3 Missense_Mutation p.G115R 0.15 deleterious(0.04) benign(0.236) TCGA-05-4382-01 19 38899416 38899416 G T FAM98C Missense_Mutation p.R315L 0.24 deleterious(0) probably_damaging(0.976) TCGA-05-4382-01 19 42221645 42221645 T G CEACAM5 Missense_Mutation p.N410K 0.16 tolerated(0.22) probably_damaging(0.964) TCGA-05-4382-01 19 43268410 43268410 G T PSG8 Missense_Mutation p.P30T 0.17 tolerated(0.17) benign(0.038) TCGA-05-4382-01 19 43269796 43269796 G T PSG8 5'UTR 0.10 TCGA-05-4382-01 19 43349343 43349343 G T PSG10P RNA 0.15 TCGA-05-4382-01 19 43757746 43757746 T A PSG9 3'UTR 0.09 TCGA-05-4382-01 19 44058904 44058904 G C XRCC1 Nonsense_Mutation p.S103* 0.09 TCGA-05-4382-01 19 44222873 44222873 C G IRGC Missense_Mutation p.L55V 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-05-4382-01 19 4433496 4433496 G T CHAF1A Missense_Mutation p.C878F 0.18 deleterious(0.04) possibly_damaging(0.885) TCGA-05-4382-01 19 44377026 44377026 G T ZNF404 Missense_Mutation p.T447N 0.30 deleterious(0.02) probably_damaging(0.994) TCGA-05-4382-01 19 44500732 44500732 C G ZNF155 Missense_Mutation p.F252L 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-05-4382-01 19 44661726 44661726 G T ZNF234 Missense_Mutation p.K519N 0.22 deleterious(0) probably_damaging(1) TCGA-05-4382-01 19 44936498 44936498 T G ZNF229 Missense_Mutation p.E46A 0.14 deleterious(0) possibly_damaging(0.797) TCGA-05-4382-01 19 48542528 48542528 G - CABP5 Frame_Shift_Del p.K96Nfs*9 0.21 TCGA-05-4382-01 19 49376908 49376908 G T PPP1R15A Missense_Mutation p.A140S 0.10 tolerated(0.07) probably_damaging(0.935) TCGA-05-4382-01 19 49535344 49535344 G C CGB2 5'UTR 0.15 TCGA-05-4382-01 19 49964950 49964950 G T ALDH16A1 Missense_Mutation p.G218C 0.21 deleterious(0) probably_damaging(0.998) TCGA-05-4382-01 19 50412420 50412420 G T NUP62 Silent p.T215T 0.26 TCGA-05-4382-01 19 51274316 51274316 C T GPR32 Silent p.R153R 0.25 TCGA-05-4382-01 19 51274424 51274424 G T GPR32 Silent p.T189T 0.09 TCGA-05-4382-01 19 52272029 52272029 G T FPR2 Missense_Mutation p.G40W 0.29 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 19 52272799 52272799 C A FPR2 Nonsense_Mutation p.C296* 0.25 TCGA-05-4382-01 19 52394293 52394293 T A ZNF649 Nonsense_Mutation p.R366* 0.36 TCGA-05-4382-01 19 52537917 52537917 G C ZNF432 Missense_Mutation p.H339D 0.18 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 19 52825630 52825630 G T ZNF480 Missense_Mutation p.C376F 0.31 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 19 53770647 53770647 C T VN1R4 Missense_Mutation p.R91K 0.14 deleterious(0.02) possibly_damaging(0.767) TCGA-05-4382-01 19 54875903 54875903 C A LAIR1 Missense_Mutation p.E23D 0.05 tolerated(0.34) possibly_damaging(0.899) TCGA-05-4382-01 19 55175709 55175709 T A LILRB4 Missense_Mutation p.L143Q 0.12 tolerated(0.08) possibly_damaging(0.639) TCGA-05-4382-01 19 55697269 55697269 C G PTPRH Silent p.V954V 0.22 TCGA-05-4382-01 19 55718275 55718275 G A PTPRH Missense_Mutation p.S45F 0.10 probably_damaging(0.997) TCGA-05-4382-01 19 56369120 56369120 C T NLRP4 Silent p.L121L 0.26 TCGA-05-4382-01 19 56369305 56369305 C A NLRP4 Missense_Mutation p.F182L 0.23 deleterious(0) probably_damaging(0.991) TCGA-05-4382-01 19 56443578 56443578 G T NLRP13 Missense_Mutation p.L34I 0.18 deleterious(0.02) probably_damaging(0.997) TCGA-05-4382-01 19 56473435 56473435 C T NLRP8 Missense_Mutation p.A682V 0.24 tolerated(0.65) benign(0.011) TCGA-05-4382-01 19 56701251 56701251 T A ZSCAN5B Missense_Mutation p.Q478L 0.36 deleterious(0.02) benign(0.145) TCGA-05-4382-01 19 56701293 56701293 T A ZSCAN5B Missense_Mutation p.E464V 0.09 tolerated(1) probably_damaging(0.998) TCGA-05-4382-01 19 56953439 56953439 G T ZNF667 Missense_Mutation p.P309T 0.36 tolerated(0.26) benign(0.004) TCGA-05-4382-01 19 57328676 57328676 A G PEG3 Silent p.N378N 0.28 TCGA-05-4382-01 19 57333091 57333091 C A PEG3 Silent p.V199V 0.08 TCGA-05-4382-01 19 57802137 57802137 C T ZNF460 Silent p.L76L 0.22 TCGA-05-4382-01 19 58549271 58549271 G T ZSCAN1 Missense_Mutation p.D23Y 0.29 deleterious(0) probably_damaging(0.996) TCGA-05-4382-01 19 58579104 58579104 G T ZNF135 Missense_Mutation p.A442S 0.23 tolerated(0.2) possibly_damaging(0.904) TCGA-05-4382-01 19 58718367 58718367 G T ZNF274 Missense_Mutation p.D179Y 0.41 deleterious(0.04) benign(0.189) TCGA-05-4382-01 19 8127168 8127168 C A CCL25 3'UTR 0.21 TCGA-05-4382-01 19 8196580 8196580 C A FBN3 Silent p.V616V 0.12 TCGA-05-4382-01 19 8807930 8807930 G T ACTL9 Silent p.P374P 0.13 TCGA-05-4382-01 19 9018138 9018138 C G MUC16 Missense_Mutation p.L12600F 0.19 possibly_damaging(0.829) TCGA-05-4382-01 19 9056877 9056877 G T MUC16 Missense_Mutation p.P10190H 0.16 benign(0.027) TCGA-05-4382-01 19 9065903 9065903 T A MUC16 Silent p.T7181T 0.12 TCGA-05-4382-01 19 9269576 9269576 G T ZNF317 Missense_Mutation p.V154L 0.13 tolerated(0.32) benign(0.001) TCGA-05-4382-01 19 9362498 9362498 G C OR7E24 Missense_Mutation p.G260A 0.16 tolerated(0.06) possibly_damaging(0.651) TCGA-05-4382-01 19 9643518 9643518 C G ZNF426 Intron 0.18 TCGA-05-4382-01 1 100183082 100183082 C A FRRS1 Splice_Site p.X374_splice 0.10 TCGA-05-4382-01 1 103453205 103453205 C A COL11A1 Missense_Mutation p.G829V 0.29 unknown(0) TCGA-05-4382-01 1 104115874 104115874 G T AMY2B Missense_Mutation p.A169S 0.05 tolerated(0.32) benign(0.013) TCGA-05-4382-01 1 108299900 108299900 C A VAV3 Missense_Mutation p.A357S 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-05-4382-01 1 109270513 109270513 G T FNDC7 Nonsense_Mutation p.E399* 0.06 TCGA-05-4382-01 1 109953731 109953731 G T PSMA5 Missense_Mutation p.H155N 0.18 deleterious(0.02) possibly_damaging(0.783) TCGA-05-4382-01 1 110996662 110996662 C A PROK1 Missense_Mutation p.T51N 0.11 deleterious(0) probably_damaging(0.987) TCGA-05-4382-01 1 111060306 111060306 C T KCNA10 Silent p.L368L 0.08 TCGA-05-4382-01 1 113265779 113265779 G A FAM19A3 Missense_Mutation p.C86Y 0.14 deleterious(0) possibly_damaging(0.733) TCGA-05-4382-01 1 114254368 114254368 C A PHTF1 Missense_Mutation p.Q349H 0.06 tolerated(0.07) possibly_damaging(0.873) TCGA-05-4382-01 1 114508811 114508812 - G HIPK1 Frame_Shift_Ins p.V768Gfs*25 0.19 TCGA-05-4382-01 1 114522082 114522082 G T OLFML3 5'UTR 0.10 TCGA-05-4382-01 1 114680353 114680353 A C SYT6 Missense_Mutation p.C194G 0.13 deleterious(0.01) benign(0.181) TCGA-05-4382-01 1 115220007 115220007 G T AMPD1 Silent p.P484P 0.08 TCGA-05-4382-01 1 115523985 115523985 C A SYCP1 Missense_Mutation p.P804H 0.21 deleterious(0.04) benign(0.027) TCGA-05-4382-01 1 117131682 117131682 C A IGSF3 Missense_Mutation p.V712L 0.08 tolerated(0.53) benign(0.02) TCGA-05-4382-01 1 117527322 117527322 T C PTGFRN Missense_Mutation p.S730P 0.12 tolerated(0.08) possibly_damaging(0.488) TCGA-05-4382-01 1 1190769 1190769 G A UBE2J2 Silent p.V214V 0.22 TCGA-05-4382-01 1 11918461 11918461 G A NPPB Silent p.P66P 0.06 TCGA-05-4382-01 1 120050035 120050035 G C HSD3B1 5'UTR 0.13 TCGA-05-4382-01 1 120478159 120478159 C T NOTCH2 Silent p.Q1197Q 0.21 TCGA-05-4382-01 1 1262354 1262354 G A GLTPD1 Missense_Mutation p.D22N 0.11 tolerated(0.79) benign(0) TCGA-05-4382-01 1 12785391 12785391 C T AADACL3 Nonsense_Mutation p.Q161* 0.15 TCGA-05-4382-01 1 12837328 12837328 T G PRAMEF12 Silent p.A346A 0.26 TCGA-05-4382-01 1 13718456 13718456 G C PRAMEF17 Missense_Mutation p.D307H 0.11 deleterious(0) possibly_damaging(0.907) TCGA-05-4382-01 1 145439780 145439780 C G TXNIP Missense_Mutation p.P109R 0.06 tolerated(0.1) benign(0.029) TCGA-05-4382-01 1 145539090 145539090 C T ITGA10 Silent p.N1010N 0.17 TCGA-05-4382-01 1 145563069 145563069 C A ANKRD35 Silent p.L919L 0.11 TCGA-05-4382-01 1 149916312 149916312 C A OTUD7B Missense_Mutation p.G659V 0.08 tolerated_low_confidence(0.13) benign(0.022) TCGA-05-4382-01 1 150040772 150040772 G A VPS45 Missense_Mutation p.R60Q 0.06 deleterious(0.02) benign(0.313) TCGA-05-4382-01 1 151149508 151149508 C A VPS72 Missense_Mutation p.R247I 0.06 tolerated(0.22) benign(0.063) TCGA-05-4382-01 1 151239025 151239025 G T PSMD4 Missense_Mutation p.D309Y 0.51 deleterious(0) benign(0.14) TCGA-05-4382-01 1 151867517 151867517 C T THEM4 Missense_Mutation p.E85K 0.06 tolerated(0.33) benign(0.003) TCGA-05-4382-01 1 152192277 152192277 G T HRNR Missense_Mutation p.H610N 0.08 unknown(0) TCGA-05-4382-01 1 152276776 152276776 G T FLG Missense_Mutation p.P3529H 0.37 unknown(0) TCGA-05-4382-01 1 152279055 152279055 C T FLG Silent p.Q2769Q 0.19 TCGA-05-4382-01 1 152282354 152282354 G T FLG Missense_Mutation p.Q1670K 0.42 benign(0.042) TCGA-05-4382-01 1 152283677 152283677 C A FLG Missense_Mutation p.G1229C 0.08 probably_damaging(0.995) TCGA-05-4382-01 1 152326453 152326453 G T FLG2 Missense_Mutation p.S1270Y 0.10 unknown(0) TCGA-05-4382-01 1 152659626 152659626 T A LCE2B Missense_Mutation p.C103S 0.31 tolerated_low_confidence(0.28) unknown(0) TCGA-05-4382-01 1 152732303 152732303 A T KPRP Missense_Mutation p.Q80L 0.05 deleterious(0.02) benign(0.034) TCGA-05-4382-01 1 152759971 152759971 G T LCE1E Missense_Mutation p.G66C 0.13 tolerated_low_confidence(0.15) unknown(0) TCGA-05-4382-01 1 152777761 152777761 C A LCE1C Missense_Mutation p.G65V 0.29 tolerated_low_confidence(0.24) unknown(0) TCGA-05-4382-01 1 154110713 154110713 T A NUP210L Missense_Mutation p.K240I 0.10 deleterious(0.02) probably_damaging(0.933) TCGA-05-4382-01 1 154919271 154919271 C G PBXIP1 Missense_Mutation p.K293N 0.06 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 1 155145212 155145212 A G KRTCAP2 Splice_Site p.X79_splice 0.20 TCGA-05-4382-01 1 155228631 155228631 T G SCAMP3 Missense_Mutation p.Y168S 0.25 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 1 156533420 156533420 A G IQGAP3 Missense_Mutation p.Y182H 0.11 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 1 156622600 156622600 C A BCAN Missense_Mutation p.P620T 0.24 tolerated(0.06) benign(0.366) TCGA-05-4382-01 1 156714928 156714928 C A HDGF Missense_Mutation p.G75C 0.26 deleterious(0) probably_damaging(1) TCGA-05-4382-01 1 157062580 157062580 G T ETV3L Missense_Mutation p.P316H 0.24 deleterious(0) possibly_damaging(0.541) TCGA-05-4382-01 1 157508921 157508921 C A FCRL5 Missense_Mutation p.G453C 0.10 deleterious(0) probably_damaging(1) TCGA-05-4382-01 1 157555977 157555977 C G FCRL4 Silent p.V372V 0.19 TCGA-05-4382-01 1 157737468 157737468 G C FCRL2 Intron 0.25 TCGA-05-4382-01 1 157803248 157803248 T A CD5L Missense_Mutation p.E258V 0.12 deleterious(0.02) benign(0.393) TCGA-05-4382-01 1 158262614 158262614 G T CD1C Missense_Mutation p.C280F 0.14 deleterious(0) probably_damaging(1) TCGA-05-4382-01 1 15831140 15831140 C A CASP9 Missense_Mutation p.K278N 0.20 deleterious(0) probably_damaging(0.989) TCGA-05-4382-01 1 158517593 158517593 G T OR6Y1 Silent p.G101G 0.10 TCGA-05-4382-01 1 158576967 158576967 G C OR10Z1 Missense_Mutation p.V247L 0.22 deleterious(0) possibly_damaging(0.469) TCGA-05-4382-01 1 158644206 158644206 A T SPTA1 Silent p.S421S 0.11 TCGA-05-4382-01 1 158644207 158644207 G T SPTA1 Missense_Mutation p.S421Y 0.11 deleterious(0) probably_damaging(0.972) TCGA-05-4382-01 1 158669885 158669885 C G OR6K2 Silent p.L186L 0.24 TCGA-05-4382-01 1 159283598 159283598 A G OR10J3 Silent p.P284P 0.07 TCGA-05-4382-01 1 160389247 160389247 G T VANGL2 Silent p.V216V 0.04 TCGA-05-4382-01 1 160719714 160719714 G T SLAMF7 Silent p.V160V 0.10 TCGA-05-4382-01 1 160849175 160849175 T A ITLN1 Missense_Mutation p.R239W 0.04 deleterious(0.02) benign(0.041) TCGA-05-4382-01 1 160968656 160968656 C T F11R 3'UTR 0.08 TCGA-05-4382-01 1 161987227 161987227 G T OLFML2B Missense_Mutation p.T170N 0.09 deleterious(0.01) probably_damaging(0.979) TCGA-05-4382-01 1 162724443 162724443 G T DDR2 Missense_Mutation p.W72L 0.26 deleterious(0) probably_damaging(0.997) TCGA-05-4382-01 1 163122409 163122409 G T RGS5 Silent p.S105S 0.30 TCGA-05-4382-01 1 165324856 165324856 C A LMX1A Intron 0.20 TCGA-05-4382-01 1 165380317 165380317 C G RXRG Missense_Mutation p.E218Q 0.10 deleterious(0.03) probably_damaging(0.968) TCGA-05-4382-01 1 165414138 165414138 C A RXRG 5'UTR 0.21 TCGA-05-4382-01 1 165532902 165532902 G T LRRC52 Silent p.V261V 0.09 TCGA-05-4382-01 1 167974027 167974027 G C DCAF6 Missense_Mutation p.Q458H 0.14 deleterious_low_confidence(0.01) probably_damaging(0.984) TCGA-05-4382-01 1 169526046 169526046 G T F5 Missense_Mutation p.P264T 0.15 deleterious(0) probably_damaging(1) TCGA-05-4382-01 1 171621555 171621555 T A MYOC Missense_Mutation p.Q66L 0.10 tolerated(0.07) benign(0.02) TCGA-05-4382-01 1 17257065 17257065 G T CROCC Missense_Mutation p.E275D 0.10 probably_damaging(0.999) TCGA-05-4382-01 1 17257066 17257066 G T CROCC Missense_Mutation p.A276S 0.10 benign(0.203) TCGA-05-4382-01 1 173702931 173702931 G A KLHL20 Missense_Mutation p.E35K 0.21 tolerated(0.32) benign(0.078) TCGA-05-4382-01 1 173883690 173883690 C A SERPINC1 Splice_Site p.X136_splice 0.12 TCGA-05-4382-01 1 17593246 17593246 C A PADI3 Silent p.G147G 0.08 TCGA-05-4382-01 1 176526098 176526098 G T PAPPA2 Missense_Mutation p.G214C 0.24 tolerated(0.05) benign(0.435) TCGA-05-4382-01 1 176526099 176526099 G C PAPPA2 Missense_Mutation p.G214A 0.23 tolerated(0.76) benign(0.014) TCGA-05-4382-01 1 176992707 176992707 C A ASTN1 Missense_Mutation p.G424V 0.20 deleterious(0) probably_damaging(1) TCGA-05-4382-01 1 177001826 177001826 C T ASTN1 Missense_Mutation p.G211R 0.28 tolerated_low_confidence(0.06) probably_damaging(1) TCGA-05-4382-01 1 177247804 177247804 A T BRINP2 Missense_Mutation p.Q373L 0.07 tolerated(0.07) benign(0.038) TCGA-05-4382-01 1 178846684 178846684 G T RALGPS2 Missense_Mutation p.G220V 0.21 deleterious(0) benign(0.011) TCGA-05-4382-01 1 179078178 179078178 C A ABL2 Missense_Mutation p.G742W 0.41 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-05-4382-01 1 179338107 179338107 G T AXDND1 Missense_Mutation p.K90N 0.35 deleterious(0.01) benign(0.002) TCGA-05-4382-01 1 179533830 179533830 C A NPHS2 Missense_Mutation p.V125L 0.07 deleterious(0.02) benign(0.001) TCGA-05-4382-01 1 179631268 179631268 G T TDRD5 Silent p.L784L 0.09 TCGA-05-4382-01 1 179659901 179659901 C A TDRD5 Missense_Mutation p.D977E 0.34 tolerated(0.27) benign(0.012) TCGA-05-4382-01 1 179660007 179660007 G T TDRD5 Missense_Mutation p.A1013S 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-05-4382-01 1 180885304 180885304 G T KIAA1614 Missense_Mutation p.G22V 0.07 tolerated(0.1) possibly_damaging(0.736) TCGA-05-4382-01 1 181705562 181705562 C T CACNA1E Silent p.T1138T 0.20 TCGA-05-4382-01 1 185069342 185069342 G T RNF2 Missense_Mutation p.G307V 0.23 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 1 185704050 185704050 G T HMCN1 Missense_Mutation p.D47Y 0.09 probably_damaging(0.988) TCGA-05-4382-01 1 186266034 186266034 C G PRG4 Nonsense_Mutation p.Y9* 0.08 TCGA-05-4382-01 1 19166909 19166909 A T TAS1R2 Silent p.A568A 0.09 TCGA-05-4382-01 1 1920390 1920390 C G C1orf222 Silent p.P21P 0.14 TCGA-05-4382-01 1 192150455 192150455 C T RGS18 Missense_Mutation p.T106I 0.08 deleterious(0) possibly_damaging(0.854) TCGA-05-4382-01 1 196398799 196398799 C A KCNT2 Missense_Mutation p.V243L 0.21 deleterious(0) probably_damaging(0.987) TCGA-05-4382-01 1 196654312 196654312 G T CFH Silent p.R303R 0.20 TCGA-05-4382-01 1 196977662 196977662 A G CFHR5 Missense_Mutation p.Q520R 0.23 tolerated(0.08) benign(0.012) TCGA-05-4382-01 1 197072368 197072368 T G ASPM Silent p.R2005R 0.21 TCGA-05-4382-01 1 197094181 197094181 T A ASPM Missense_Mutation p.E1026V 0.17 deleterious(0) probably_damaging(0.994) TCGA-05-4382-01 1 197115617 197115617 G A ASPM 5'UTR 0.09 TCGA-05-4382-01 1 197396583 197396583 G A CRB1 Splice_Site p.X710_splice 0.11 TCGA-05-4382-01 1 198701654 198701654 G T PTPRC Missense_Mutation p.G704V 0.10 deleterious(0) probably_damaging(1) TCGA-05-4382-01 1 201297978 201297978 A T PKP1 3'UTR 0.09 TCGA-05-4382-01 1 20246811 20246811 G T PLA2G2E Missense_Mutation p.P140T 0.23 deleterious(0) probably_damaging(0.997) TCGA-05-4382-01 1 202715449 202715449 T A KDM5B Silent p.G673G 0.21 TCGA-05-4382-01 1 203743105 203743105 G - LAX1 Frame_Shift_Del p.N166Tfs*41 0.10 TCGA-05-4382-01 1 204587229 204587229 A T LRRN2 Missense_Mutation p.L631H 0.26 tolerated(0.28) possibly_damaging(0.533) TCGA-05-4382-01 1 204588730 204588730 G - LRRN2 Frame_Shift_Del p.R131Gfs*47 0.08 TCGA-05-4382-01 1 204951081 204951081 C T NFASC Silent p.V801V 0.21 TCGA-05-4382-01 1 205031440 205031440 T A CNTN2 Intron 0.20 TCGA-05-4382-01 1 206821658 206821658 C G DYRK3 Missense_Mutation p.S372C 0.14 deleterious(0) probably_damaging(0.997) TCGA-05-4382-01 1 207111097 207111097 C A PIGR Splice_Site p.X130_splice 0.28 TCGA-05-4382-01 1 207782848 207782848 C T CR1 Missense_Mutation p.S2037F 0.11 tolerated(0.36) probably_damaging(0.945) TCGA-05-4382-01 1 208212308 208212308 C A PLXNA2 Missense_Mutation p.D1508Y 0.20 tolerated(0.08) probably_damaging(0.995) TCGA-05-4382-01 1 208390214 208390214 C A PLXNA2 Missense_Mutation p.D352Y 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-05-4382-01 1 210273453 210273453 G T SYT14 Missense_Mutation p.D316Y 0.15 deleterious(0) probably_damaging(0.951) TCGA-05-4382-01 1 215259913 215259913 G A KCNK2 Silent p.L83L 0.10 TCGA-05-4382-01 1 216370014 216370014 G C USH2A Missense_Mutation p.L1378V 0.10 possibly_damaging(0.665) TCGA-05-4382-01 1 217784288 217784288 C A GPATCH2 Missense_Mutation p.V321F 0.10 tolerated(0.09) probably_damaging(0.918) TCGA-05-4382-01 1 220198515 220198515 C G EPRS Missense_Mutation p.D237H 0.06 deleterious(0) probably_damaging(0.988) TCGA-05-4382-01 1 220791840 220791840 C T MARK1 Silent p.L247L 0.17 TCGA-05-4382-01 1 222757545 222757545 T A TAF1A Missense_Mutation p.Q72H 0.10 deleterious(0.01) possibly_damaging(0.652) TCGA-05-4382-01 1 22310312 22310312 G C CELA3B Missense_Mutation p.G163A 0.07 deleterious(0) probably_damaging(1) TCGA-05-4382-01 1 226566929 226566929 G T PARP1 Missense_Mutation p.F553L 0.13 tolerated(0.17) benign(0.05) TCGA-05-4382-01 1 228547770 228547770 G T OBSCN Intron 0.19 TCGA-05-4382-01 1 228602593 228602594 - T TRIM17 Frame_Shift_Ins p.P61Tfs*130 0.18 TCGA-05-4382-01 1 229588382 229588382 C A NUP133 Nonsense_Mutation p.E997* 0.15 TCGA-05-4382-01 1 229730411 229730411 C G TAF5L Missense_Mutation p.R468P 0.10 deleterious(0.02) probably_damaging(0.921) TCGA-05-4382-01 1 229771777 229771778 - T URB2 Frame_Shift_Ins p.L474Ffs*10 0.13 TCGA-05-4382-01 1 232596806 232596806 C A SIPA1L2 Silent p.V974V 0.04 TCGA-05-4382-01 1 232943628 232943628 G C MAP10 Missense_Mutation p.Q953H 0.07 tolerated(0.08) benign(0.058) TCGA-05-4382-01 1 236341796 236341796 G T GPR137B Nonsense_Mutation p.G183* 0.10 TCGA-05-4382-01 1 237774140 237774140 G T RYR2 Missense_Mutation p.V1588L 0.34 benign(0.028) TCGA-05-4382-01 1 237798224 237798224 G T RYR2 Missense_Mutation p.V2242L 0.32 probably_damaging(0.981) TCGA-05-4382-01 1 237802371 237802371 G A RYR2 Missense_Mutation p.E2329K 0.25 probably_damaging(0.955) TCGA-05-4382-01 1 237906912 237906912 C A RYR2 Intron 0.10 TCGA-05-4382-01 1 238050727 238050727 G T ZP4 Missense_Mutation p.Q230K 0.19 tolerated(0.29) benign(0.038) TCGA-05-4382-01 1 240497463 240497463 C T FMN2 Nonsense_Mutation p.Q1567* 0.04 TCGA-05-4382-01 1 240969465 240969465 C A RGS7 Missense_Mutation p.G415V 0.17 deleterious(0) probably_damaging(1) TCGA-05-4382-01 1 241752098 241752098 C G KMO Missense_Mutation p.A355G 0.13 deleterious(0) probably_damaging(0.996) TCGA-05-4382-01 1 242016740 242016740 G C EXO1 Missense_Mutation p.R121P 0.18 deleterious(0) probably_damaging(0.956) TCGA-05-4382-01 1 244218404 244218404 G T ZBTB18 Missense_Mutation p.G443V 0.07 deleterious(0.05) probably_damaging(0.988) TCGA-05-4382-01 1 245530532 245530532 G T KIF26B Missense_Mutation p.A288S 0.23 tolerated(0.34) unknown(0) TCGA-05-4382-01 1 246811284 246811284 C T CNST Missense_Mutation p.S594F 0.09 deleterious(0.04) probably_damaging(0.937) TCGA-05-4382-01 1 24700270 24700270 T A STPG1 Missense_Mutation p.N165Y 0.14 deleterious(0) possibly_damaging(0.471) TCGA-05-4382-01 1 247057967 247057967 T C AHCTF1 Missense_Mutation p.R609G 0.11 tolerated(0.12) benign(0.268) TCGA-05-4382-01 1 247464362 247464362 C A ZNF496 Missense_Mutation p.C408F 0.21 deleterious(0) probably_damaging(1) TCGA-05-4382-01 1 247588039 247588039 C A NLRP3 Missense_Mutation p.L432I 0.21 deleterious(0.01) possibly_damaging(0.852) TCGA-05-4382-01 1 247597508 247597508 G C NLRP3 Missense_Mutation p.G811R 0.10 tolerated(0.09) probably_damaging(0.939) TCGA-05-4382-01 1 247751880 247751880 C A OR2G2 Nonsense_Mutation p.Y73* 0.10 TCGA-05-4382-01 1 247835749 247835749 C A OR13G1 Missense_Mutation p.A199S 0.06 tolerated(0.07) possibly_damaging(0.802) TCGA-05-4382-01 1 247836020 247836020 C A OR13G1 Missense_Mutation p.E108D 0.09 deleterious(0.01) possibly_damaging(0.732) TCGA-05-4382-01 1 247836100 247836100 T A OR13G1 Missense_Mutation p.M82L 0.22 tolerated(1) benign(0.001) TCGA-05-4382-01 1 247836101 247836101 G T OR13G1 Silent p.T81T 0.22 TCGA-05-4382-01 1 247836345 247836345 C A OR13G1 5'UTR 0.21 TCGA-05-4382-01 1 247875377 247875377 C A OR6F1 Missense_Mutation p.R227S 0.10 deleterious(0.03) possibly_damaging(0.517) TCGA-05-4382-01 1 247902365 247902365 G T OR14K1 Missense_Mutation p.R150I 0.09 deleterious(0) benign(0.007) TCGA-05-4382-01 1 247921038 247921038 G T OR1C1 Missense_Mutation p.T224N 0.08 tolerated(0.15) possibly_damaging(0.798) TCGA-05-4382-01 1 248112310 248112310 G T OR2L8 Missense_Mutation p.D51Y 0.09 deleterious(0) probably_damaging(0.996) TCGA-05-4382-01 1 248129343 248129343 T G OR2AK2 Missense_Mutation p.L237R 0.06 deleterious(0) probably_damaging(0.992) TCGA-05-4382-01 1 248224093 248224093 C A OR2L3 Missense_Mutation p.A37D 0.23 deleterious(0) possibly_damaging(0.901) TCGA-05-4382-01 1 248224537 248224537 C A OR2L3 Missense_Mutation p.T185N 0.09 tolerated(0.15) benign(0.046) TCGA-05-4382-01 1 248343733 248343733 G T OR2M2 Missense_Mutation p.W149L 0.23 deleterious(0) probably_damaging(0.992) TCGA-05-4382-01 1 248366486 248366486 C A OR2M3 Missense_Mutation p.F39L 0.09 tolerated(1) benign(0.002) TCGA-05-4382-01 1 248436451 248436451 A T OR2T33 Silent p.A222A 0.15 TCGA-05-4382-01 1 248458331 248458331 G A OR2T12 Missense_Mutation p.R184C 0.22 deleterious(0.02) benign(0.26) TCGA-05-4382-01 1 248458840 248458840 C A OR2T12 Missense_Mutation p.G14V 0.06 deleterious(0) probably_damaging(1) TCGA-05-4382-01 1 248525336 248525336 T A OR2T4 Missense_Mutation p.Y152N 0.27 deleterious(0) probably_damaging(0.98) TCGA-05-4382-01 1 248569885 248569885 G T OR2T1 Missense_Mutation p.G197V 0.21 deleterious(0.04) benign(0.271) TCGA-05-4382-01 1 248756307 248756307 C T OR2T10 Missense_Mutation p.A255T 0.14 deleterious(0.03) possibly_damaging(0.483) TCGA-05-4382-01 1 248845057 248845057 C A OR14I1 Missense_Mutation p.L183F 0.19 deleterious(0) possibly_damaging(0.521) TCGA-05-4382-01 1 248845196 248845196 C A OR14I1 Missense_Mutation p.G137V 0.10 tolerated(0.19) benign(0.036) TCGA-05-4382-01 1 248845197 248845197 C A OR14I1 Nonsense_Mutation p.G137* 0.11 TCGA-05-4382-01 1 26370836 26370836 G C SLC30A2 Missense_Mutation p.S124C 0.14 deleterious(0) probably_damaging(0.938) TCGA-05-4382-01 1 26526438 26526438 C A CATSPER4 Silent p.T292T 0.14 TCGA-05-4382-01 1 27105667 27105667 G T ARID1A Nonsense_Mutation p.E1760* 0.19 TCGA-05-4382-01 1 27121068 27121068 G C PIGV Missense_Mutation p.M181I 0.07 deleterious(0.01) possibly_damaging(0.497) TCGA-05-4382-01 1 27332971 27332971 C T FAM46B Missense_Mutation p.E248K 0.10 deleterious(0.03) benign(0.025) TCGA-05-4382-01 1 27333053 27333053 C A FAM46B Missense_Mutation p.Q220H 0.16 deleterious(0.01) possibly_damaging(0.657) TCGA-05-4382-01 1 2939410 2939410 G A ACTRT2 3'UTR 0.07 TCGA-05-4382-01 1 32626214 32626214 A T KPNA6 Splice_Site p.X187_splice 0.16 TCGA-05-4382-01 1 33480187 33480187 T A AK2 Missense_Mutation p.H145L 0.22 deleterious(0) probably_damaging(1) TCGA-05-4382-01 1 34667733 34667733 G T C1orf94 Missense_Mutation p.G440V 0.07 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 1 35226986 35226986 G T GJB4 Missense_Mutation p.W44L 0.07 deleterious(0) probably_damaging(1) TCGA-05-4382-01 1 35250728 35250728 A G GJB3 Missense_Mutation p.K122R 0.05 tolerated(0.09) possibly_damaging(0.802) TCGA-05-4382-01 1 35370074 35370074 C A DLGAP3 Missense_Mutation p.R304L 0.08 tolerated(0.34) benign(0) TCGA-05-4382-01 1 36026317 36026317 G T NCDN Missense_Mutation p.G189C 0.12 deleterious(0.02) probably_damaging(0.954) TCGA-05-4382-01 1 36646030 36646030 G T MAP7D1 3'UTR 0.27 TCGA-05-4382-01 1 3669282 3669282 G T CCDC27 Silent p.R79R 0.21 TCGA-05-4382-01 1 37267485 37267485 G T GRIK3 Silent p.A909A 0.19 TCGA-05-4382-01 1 37291209 37291209 G A GRIK3 Silent p.I583I 0.18 TCGA-05-4382-01 1 38034454 38034454 G A GNL2 Silent p.V622V 0.09 TCGA-05-4382-01 1 3807396 3807396 G A C1orf174 Missense_Mutation p.L119F 0.09 tolerated(0.36) benign(0.077) TCGA-05-4382-01 1 39340852 39340852 G A GJA9 Nonsense_Mutation p.Q307* 0.05 TCGA-05-4382-01 1 39340853 39340853 G A GJA9 Silent p.F306F 0.06 TCGA-05-4382-01 1 39888557 39888557 G A MACF1 Silent p.Q3316Q 0.11 TCGA-05-4382-01 1 40747027 40747027 C T ZMPSTE24 Missense_Mutation p.S261F 0.05 deleterious(0) probably_damaging(0.967) TCGA-05-4382-01 1 43111812 43111812 A T CCDC30 Nonsense_Mutation p.K633* 0.18 TCGA-05-4382-01 1 43637203 43637203 G A EBNA1BP2 Silent p.N145N 0.19 TCGA-05-4382-01 1 43803815 43803815 C A MPL Missense_Mutation p.S42Y 0.08 deleterious(0) probably_damaging(0.998) TCGA-05-4382-01 1 44429990 44429990 A C IPO13 Silent p.A798A 0.14 TCGA-05-4382-01 1 46972667 46972667 G C DMBX1 5'Flank 0.06 TCGA-05-4382-01 1 53925146 53925146 G T DMRTB1 Missense_Mutation p.R7L 0.22 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 1 53932273 53932273 C A DMRTB1 Missense_Mutation p.Q323K 0.20 deleterious(0.01) benign(0.319) TCGA-05-4382-01 1 54610303 54610303 A T CDCP2 Missense_Mutation p.L88Q 0.07 deleterious(0) probably_damaging(0.996) TCGA-05-4382-01 1 55464866 55464866 G T BSND Missense_Mutation p.D3Y 0.10 deleterious(0) probably_damaging(0.982) TCGA-05-4382-01 1 57333353 57333353 G A C8A Missense_Mutation p.C50Y 0.10 deleterious(0) probably_damaging(0.986) TCGA-05-4382-01 1 57411562 57411562 G T C8B Missense_Mutation p.T346K 0.11 tolerated(0.06) benign(0.159) TCGA-05-4382-01 1 60328550 60328550 G T HOOK1 Splice_Site p.X542_splice 0.09 TCGA-05-4382-01 1 6147562 6147562 G T KCNAB2 Missense_Mutation p.W154L 0.22 deleterious(0) benign(0.126) TCGA-05-4382-01 1 6196657 6196657 C G CHD5 Silent p.L872L 0.14 TCGA-05-4382-01 1 62582842 62582842 C G INADL Silent p.L1614L 0.10 TCGA-05-4382-01 1 67816660 67816660 C T IL12RB2 Silent p.S382S 0.06 TCGA-05-4382-01 1 70339153 70339153 C A LRRC7 Intron 0.05 TCGA-05-4382-01 1 70505073 70505073 G T LRRC7 Missense_Mutation p.G1151V 0.07 tolerated(0.14) benign(0.151) TCGA-05-4382-01 1 70505074 70505074 G T LRRC7 Silent p.G1151G 0.07 TCGA-05-4382-01 1 72748123 72748123 C A NEGR1 Missense_Mutation p.A19S 0.07 tolerated(0.28) benign(0.396) TCGA-05-4382-01 1 74957895 74957895 C T TNNI3K Missense_Mutation p.R867C 0.08 tolerated_low_confidence(0.07) possibly_damaging(0.897) TCGA-05-4382-01 1 75114989 75114989 C A C1orf173 Missense_Mutation p.A12S 0.07 deleterious(0.01) possibly_damaging(0.768) TCGA-05-4382-01 1 76205759 76205759 A T ACADM Missense_Mutation p.Q192L 0.20 deleterious(0.03) benign(0.175) TCGA-05-4382-01 1 76254898 76254898 G A RABGGTB Missense_Mutation p.V56I 0.18 deleterious(0) benign(0.006) TCGA-05-4382-01 1 82436173 82436173 G T LPHN2 Missense_Mutation p.G953V 0.18 deleterious(0) probably_damaging(0.954) TCGA-05-4382-01 1 82456310 82456310 C G LPHN2 Silent p.V1231V 0.05 TCGA-05-4382-01 1 82456512 82456512 C A LPHN2 Missense_Mutation p.L1299M 0.10 deleterious_low_confidence(0.02) probably_damaging(0.926) TCGA-05-4382-01 1 8425871 8425871 C T RERE Splice_Site p.X483_splice 0.09 TCGA-05-4382-01 1 85656358 85656358 C A SYDE2 Missense_Mutation p.G275C 0.19 tolerated_low_confidence(0.1) benign(0.006) TCGA-05-4382-01 1 87101776 87101776 T A RP4-651E10.4 Intron 0.08 TCGA-05-4382-01 1 87101777 87101777 G T RP4-651E10.4 Intron 0.08 TCGA-05-4382-01 1 89654458 89654458 T G GBP4 Missense_Mutation p.K406T 0.07 deleterious(0.01) probably_damaging(0.934) TCGA-05-4382-01 1 89849270 89849270 G C GBP6 Missense_Mutation p.L475F 0.26 deleterious(0.01) benign(0.441) TCGA-05-4382-01 1 91818090 91818090 C T HFM1 Silent p.Q650Q 0.26 TCGA-05-4382-01 1 92479900 92479900 G T BRDT 3'UTR 0.29 TCGA-05-4382-01 1 93691946 93691946 G C CCDC18 Missense_Mutation p.L797F 0.14 deleterious(0) probably_damaging(0.976) TCGA-05-4382-01 1 99772061 99772061 C A LPPR4 Missense_Mutation p.T596N 0.06 tolerated(0.16) benign(0) TCGA-05-4382-01 1 99772270 99772270 C G LPPR4 Missense_Mutation p.L666V 0.10 tolerated(0.08) possibly_damaging(0.89) TCGA-05-4382-01 20 13260326 13260326 G A ISM1 Missense_Mutation p.D142N 0.14 deleterious(0.01) possibly_damaging(0.451) TCGA-05-4382-01 20 13260371 13260371 G A ISM1 Missense_Mutation p.D157N 0.10 tolerated(0.47) benign(0.006) TCGA-05-4382-01 20 23066263 23066263 C T CD93 Silent p.R189R 0.23 TCGA-05-4382-01 20 23066266 23066266 G T CD93 Nonsense_Mutation p.C188* 0.23 TCGA-05-4382-01 20 23549098 23549098 G T CST9L 5'UTR 0.29 TCGA-05-4382-01 20 2843379 2843379 G T VPS16 Intron 0.34 TCGA-05-4382-01 20 29847348 29847348 G T DEFB115 Silent p.G60G 0.22 TCGA-05-4382-01 20 30065698 30065698 G T REM1 Missense_Mutation p.W136C 0.23 deleterious(0.01) probably_damaging(0.951) TCGA-05-4382-01 20 30070104 30070104 C G REM1 Missense_Mutation p.S146R 0.11 tolerated(0.22) benign(0.064) TCGA-05-4382-01 20 30584558 30584558 G A XKR7 Silent p.G346G 0.18 TCGA-05-4382-01 20 30659585 30659585 G A HCK Silent p.P61P 0.18 TCGA-05-4382-01 20 31021302 31021302 G T ASXL1 Missense_Mutation p.G434V 0.23 tolerated(0.23) possibly_damaging(0.462) TCGA-05-4382-01 20 31611278 31611278 C T BPIFB2 3'UTR 0.15 TCGA-05-4382-01 20 33337364 33337364 C A NCOA6 Missense_Mutation p.K878N 0.11 probably_damaging(0.996) TCGA-05-4382-01 20 33867799 33867799 C A EIF6 Missense_Mutation p.K164N 0.22 tolerated(0.23) benign(0.008) TCGA-05-4382-01 20 34092529 34092529 T A CEP250 Missense_Mutation p.L2111Q 0.25 benign(0.152) TCGA-05-4382-01 20 35075217 35075217 C A DLGAP4 Missense_Mutation p.R509S 0.09 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 20 36560130 36560130 A G VSTM2L Missense_Mutation p.Y72C 0.31 deleterious(0.04) benign(0.377) TCGA-05-4382-01 20 36841717 36841717 A T KIAA1755 Silent p.P1110P 0.23 TCGA-05-4382-01 20 39990774 39990774 C A EMILIN3 Nonsense_Mutation p.E479* 0.06 TCGA-05-4382-01 20 40730835 40730835 C A PTPRT Missense_Mutation p.D1215Y 0.05 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 20 40757458 40757458 C A PTPRT Missense_Mutation p.R928L 0.22 deleterious(0) probably_damaging(1) TCGA-05-4382-01 20 40790177 40790177 C A PTPRT Missense_Mutation p.G833C 0.22 tolerated(0.1) benign(0.161) TCGA-05-4382-01 20 40790178 40790178 A T PTPRT Missense_Mutation p.D832E 0.22 tolerated(0.16) benign(0.001) TCGA-05-4382-01 20 43386739 43386739 C A RIMS4 Missense_Mutation p.R109L 0.10 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-05-4382-01 20 43629814 43629814 G A STK4 Missense_Mutation p.D323N 0.18 tolerated(0.07) benign(0.052) TCGA-05-4382-01 20 43941003 43941003 C G RBPJL Missense_Mutation p.S196W 0.13 deleterious(0) probably_damaging(0.992) TCGA-05-4382-01 20 44512223 44512223 A G ZSWIM1 Missense_Mutation p.N331S 0.08 tolerated(0.62) benign(0.003) TCGA-05-4382-01 20 44588902 44588902 G C ZNF335 Silent p.P655P 0.09 TCGA-05-4382-01 20 44642321 44642321 A T MMP9 Missense_Mutation p.R546W 0.21 tolerated(0.1) benign(0.4) TCGA-05-4382-01 20 44879819 44879819 C A CDH22 Missense_Mutation p.A39S 0.41 tolerated(0.75) possibly_damaging(0.739) TCGA-05-4382-01 20 47268094 47268094 C A PREX1 Missense_Mutation p.R832L 0.12 tolerated(0.14) benign(0.018) TCGA-05-4382-01 20 49366767 49366767 G T PARD6B Missense_Mutation p.E287D 0.08 tolerated(0.52) benign(0.003) TCGA-05-4382-01 20 49626465 49626465 C A KCNG1 Silent p.R137R 0.10 TCGA-05-4382-01 20 51870276 51870276 G T TSHZ2 Silent p.S93S 0.28 TCGA-05-4382-01 20 51871406 51871406 A T TSHZ2 Missense_Mutation p.E470V 0.06 tolerated(0.26) benign(0.359) TCGA-05-4382-01 20 5294854 5294854 G A PROKR2 Silent p.I54I 0.13 TCGA-05-4382-01 20 54823861 54823861 C A MC3R 5'UTR 0.25 TCGA-05-4382-01 20 57430252 57430252 G A GNAS Silent p.K644K 0.20 TCGA-05-4382-01 20 57769381 57769381 C T ZNF831 Silent p.L1103L 0.20 TCGA-05-4382-01 20 60892796 60892796 C A LAMA5 Silent p.L2426L 0.21 TCGA-05-4382-01 20 61943875 61943875 C G COL20A1 Missense_Mutation p.S636C 0.11 deleterious(0.03) probably_damaging(0.994) TCGA-05-4382-01 20 61951687 61951687 C A COL20A1 Silent p.A1040A 0.18 TCGA-05-4382-01 20 62194003 62194003 C A HELZ2 Missense_Mutation p.D2058Y 0.29 deleterious(0) possibly_damaging(0.885) TCGA-05-4382-01 20 62596021 62596021 C A ZNF512B Missense_Mutation p.R361S 0.25 deleterious(0.01) possibly_damaging(0.873) TCGA-05-4382-01 21 11098884 11098884 C A BAGE2 RNA 0.09 TCGA-05-4382-01 21 15013663 15013663 T A POTED Intron 0.17 TCGA-05-4382-01 21 17197314 17197314 G A USP25 Missense_Mutation p.R413K 0.14 deleterious(0.01) benign(0.22) TCGA-05-4382-01 21 22370902 22370902 C T NCAM2 Silent p.F7F 0.15 TCGA-05-4382-01 21 28216549 28216549 G T ADAMTS1 Missense_Mutation p.P242H 0.09 deleterious(0.02) benign(0.006) TCGA-05-4382-01 21 28296484 28296485 CC A ADAMTS5 Frame_Shift_Del p.G894Ffs*16 0.10 TCGA-05-4382-01 21 30303583 30303583 C A LTN1 Missense_Mutation p.G1757V 0.12 deleterious(0) probably_damaging(1) TCGA-05-4382-01 21 30353440 30353440 C A LTN1 Splice_Site p.X316_splice 0.17 TCGA-05-4382-01 21 31538373 31538373 C A CLDN17 Missense_Mutation p.C188F 0.06 tolerated(0.08) possibly_damaging(0.612) TCGA-05-4382-01 21 31798007 31798007 G A KRTAP13-3 Missense_Mutation p.P75L 0.13 deleterious(0) probably_damaging(0.997) TCGA-05-4382-01 21 31971073 31971073 C A KRTAP6-2 Missense_Mutation p.G41C 0.12 unknown(0) TCGA-05-4382-01 21 31988931 31988931 A T KRTAP20-1 Missense_Mutation p.Y53F 0.13 unknown(0) TCGA-05-4382-01 21 32119364 32119364 A T KRTAP21-2 Missense_Mutation p.Y53N 0.14 tolerated_low_confidence(0.24) unknown(0) TCGA-05-4382-01 21 32589888 32589888 C A TIAM1 Missense_Mutation p.G708V 0.10 deleterious(0.02) possibly_damaging(0.689) TCGA-05-4382-01 21 34922655 34922655 A G SON Missense_Mutation p.Q373R 0.09 benign(0.043) TCGA-05-4382-01 21 35183306 35183306 G T ITSN1 Missense_Mutation p.G783C 0.11 deleterious(0) probably_damaging(1) TCGA-05-4382-01 21 37747656 37747656 A C MORC3 3'UTR 0.16 TCGA-05-4382-01 21 43299465 43299465 G T PRDM15 Missense_Mutation p.P6T 0.12 deleterious_low_confidence(0) benign(0) TCGA-05-4382-01 21 45402211 45402211 G T AGPAT3 Nonsense_Mutation p.G357* 0.12 TCGA-05-4382-01 21 45960051 45960051 G T KRTAP10-1 5'UTR 0.12 TCGA-05-4382-01 21 46057504 46057504 G T KRTAP10-10 Missense_Mutation p.C57F 0.15 deleterious(0) possibly_damaging(0.831) TCGA-05-4382-01 21 46888412 46888412 G T COL18A1 Silent p.L301L 0.10 TCGA-05-4382-01 21 47532432 47532432 A T COL6A2 Missense_Mutation p.M219L 0.14 tolerated(0.75) benign(0.002) TCGA-05-4382-01 21 47754562 47754562 A T PCNT Silent p.T173T 0.08 TCGA-05-4382-01 21 47851463 47851463 G A PCNT Silent p.E2695E 0.15 TCGA-05-4382-01 21 47987386 47987386 G T DIP2A Nonsense_Mutation p.E1523* 0.18 TCGA-05-4382-01 22 18846051 18846051 G T BCRP7 RNA 0.07 TCGA-05-4382-01 22 20100126 20100126 T C TRMT2A Missense_Mutation p.D613G 0.23 tolerated_low_confidence(0.17) benign(0.002) TCGA-05-4382-01 22 21157610 21157610 T A PI4KA Splice_Site p.X488_splice 0.11 TCGA-05-4382-01 22 22890546 22890546 C A PRAME Silent p.G491G 0.10 TCGA-05-4382-01 22 22892504 22892504 C T PRAME Silent p.V199V 0.15 TCGA-05-4382-01 22 22899246 22899246 G A PRAME Nonsense_Mutation p.R3* 0.15 TCGA-05-4382-01 22 23213916 23213916 C T IGLV4-3 Nonsense_Mutation p.Q25* 0.14 TCGA-05-4382-01 22 23223370 23223371 - C IGLV3-1 Frame_Shift_Ins p.D48Gfs*2 0.09 TCGA-05-4382-01 22 23264906 23264906 C A IGLC7 Missense_Mutation p.P48T 0.13 deleterious_low_confidence(0.01) benign(0.001) TCGA-05-4382-01 22 24036526 24036526 C A RGL4 Intron 0.11 TCGA-05-4382-01 22 26688679 26688679 C G SEZ6L Silent p.P134P 0.15 TCGA-05-4382-01 22 26995455 26995455 C T CRYBB1 Silent p.%3D 0.10 TCGA-05-4382-01 22 27008146 27008146 G A CRYBB1 Silent p.V63V 0.07 TCGA-05-4382-01 22 29886346 29886346 C A NEFH Missense_Mutation p.P906Q 0.08 deleterious_low_confidence(0) unknown(0) TCGA-05-4382-01 22 30857304 30857304 G A SEC14L3 Silent p.A358A 0.14 TCGA-05-4382-01 22 30951365 30951365 C A GAL3ST1 Missense_Mutation p.D283Y 0.16 deleterious(0.01) possibly_damaging(0.88) TCGA-05-4382-01 22 31533822 31533822 G C PLA2G3 Missense_Mutation p.H314D 0.12 tolerated(0.16) benign(0) TCGA-05-4382-01 22 32546305 32546305 C A C22orf42 Splice_Site p.X218_splice 0.15 TCGA-05-4382-01 22 32909546 32909546 G T SYN3 3'UTR 0.11 TCGA-05-4382-01 22 35481642 35481642 C T ISX Missense_Mutation p.P232S 0.14 tolerated(0.2) benign(0.042) TCGA-05-4382-01 22 35679974 35679974 C T HMGXB4 Missense_Mutation p.S412L 0.12 deleterious(0) possibly_damaging(0.636) TCGA-05-4382-01 22 37578327 37578327 C A C1QTNF6 Silent p.V246V 0.19 TCGA-05-4382-01 22 39112749 39112749 G A GTPBP1 Missense_Mutation p.R193H 0.19 deleterious(0) probably_damaging(0.977) TCGA-05-4382-01 22 39813767 39813767 C A TAB1 Missense_Mutation p.L155I 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-05-4382-01 22 40037036 40037036 A T CACNA1I Missense_Mutation p.D302V 0.09 tolerated(0.26) possibly_damaging(0.782) TCGA-05-4382-01 22 41982110 41982110 T A PMM1 Missense_Mutation p.I59F 0.15 deleterious(0.01) possibly_damaging(0.887) TCGA-05-4382-01 22 42393004 42393004 C A SEPT3 3'UTR 0.20 TCGA-05-4382-01 22 42609766 42609766 C G TCF20 Missense_Mutation p.A516P 0.09 probably_damaging(0.999) TCGA-05-4382-01 22 44285403 44285403 C A PNPLA5 Missense_Mutation p.A170S 0.14 tolerated(0.11) benign(0.013) TCGA-05-4382-01 22 45943050 45943050 C A FBLN1 Nonsense_Mutation p.Y469* 0.12 TCGA-05-4382-01 22 50278436 50278436 C T ZBED4 Missense_Mutation p.P376S 0.09 deleterious(0) benign(0.232) TCGA-05-4382-01 2 101655070 101655070 G T TBC1D8 Silent p.P361P 0.17 TCGA-05-4382-01 2 103013214 103013214 G A IL18R1 Silent p.L498L 0.14 TCGA-05-4382-01 2 103353315 103353315 C A MFSD9 5'Flank 0.20 TCGA-05-4382-01 2 107422992 107422992 G A ST6GAL2 3'UTR 0.29 TCGA-05-4382-01 2 107450570 107450570 C A ST6GAL2 Missense_Mutation p.A326S 0.09 probably_damaging(0.999) TCGA-05-4382-01 2 108608567 108608567 T A SLC5A7 Missense_Mutation p.W62R 0.06 deleterious(0) probably_damaging(0.998) TCGA-05-4382-01 2 108618378 108618378 C A SLC5A7 Nonsense_Mutation p.S208* 0.19 TCGA-05-4382-01 2 10912016 10912016 C A ATP6V1C2 Missense_Mutation p.F174L 0.15 tolerated(0.19) benign(0.405) TCGA-05-4382-01 2 10929942 10929942 C T PDIA6 Missense_Mutation p.R258K 0.13 tolerated(0.24) benign(0.001) TCGA-05-4382-01 2 109352661 109352661 G T RANBP2 Silent p.T246T 0.19 TCGA-05-4382-01 2 110373544 110373544 A T SOWAHC Missense_Mutation p.Q493L 0.19 deleterious(0) benign(0.443) TCGA-05-4382-01 2 11053201 11053201 G T KCNF1 Missense_Mutation p.V217L 0.14 tolerated(0.39) benign(0.05) TCGA-05-4382-01 2 110881445 110881445 C T NPHP1 Missense_Mutation p.D709N 0.22 tolerated(0.14) benign(0.373) TCGA-05-4382-01 2 112832511 112832511 G T TMEM87B Missense_Mutation p.R158I 0.28 tolerated(0.07) benign(0.042) TCGA-05-4382-01 2 119731985 119731985 C T MARCO Silent p.A179A 0.10 TCGA-05-4382-01 2 119750717 119750717 G A MARCO Missense_Mutation p.V424I 0.14 tolerated(0.29) unknown(0) TCGA-05-4382-01 2 121744024 121744024 G C GLI2 Silent p.L709L 0.13 TCGA-05-4382-01 2 125504945 125504945 C A CNTNAP5 Missense_Mutation p.D738E 0.09 deleterious(0) possibly_damaging(0.754) TCGA-05-4382-01 2 128387322 128387322 G T MYO7B Missense_Mutation p.R1550M 0.14 deleterious(0) probably_damaging(1) TCGA-05-4382-01 2 128873837 128873837 A G UGGT1 Splice_Site p.X265_splice 0.10 TCGA-05-4382-01 2 128880772 128880772 A C UGGT1 Missense_Mutation p.K362N 0.10 tolerated(0.13) benign(0.196) TCGA-05-4382-01 2 131520421 131520421 C A AMER3 Nonsense_Mutation p.S259* 0.20 TCGA-05-4382-01 2 132021400 132021400 A G POTEE Missense_Mutation p.Y791C 0.16 deleterious_low_confidence(0) possibly_damaging(0.834) TCGA-05-4382-01 2 132021883 132021883 A G POTEE Missense_Mutation p.N952S 0.09 tolerated_low_confidence(0.1) benign(0.312) TCGA-05-4382-01 2 132287375 132287375 G T CCDC74A Intron 0.35 TCGA-05-4382-01 2 135119873 135119873 G T MGAT5 Missense_Mutation p.G425V 0.22 deleterious(0) probably_damaging(0.941) TCGA-05-4382-01 2 135628551 135628551 C G ACMSD Silent p.T199T 0.10 TCGA-05-4382-01 2 136566685 136566685 C - LCT Frame_Shift_Del p.E1078Nfs*6 0.12 TCGA-05-4382-01 2 141032110 141032110 C T LRP1B Missense_Mutation p.S4342N 0.15 benign(0.001) TCGA-05-4382-01 2 141283457 141283457 C A LRP1B Missense_Mutation p.G2661V 0.06 probably_damaging(0.988) TCGA-05-4382-01 2 141299535 141299535 T A LRP1B Silent p.I2400I 0.28 TCGA-05-4382-01 2 141597618 141597618 C A LRP1B Missense_Mutation p.M1717I 0.23 benign(0.019) TCGA-05-4382-01 2 141660594 141660594 G T LRP1B Missense_Mutation p.H1221N 0.13 benign(0.107) TCGA-05-4382-01 2 141812791 141812791 C G LRP1B Missense_Mutation p.M482I 0.10 benign(0) TCGA-05-4382-01 2 143959748 143959748 G T ARHGAP15 Missense_Mutation p.V71F 0.15 tolerated(0.69) benign(0.002) TCGA-05-4382-01 2 152311424 152311424 C T RIF1 Missense_Mutation p.S787L 0.14 tolerated(0.12) possibly_damaging(0.616) TCGA-05-4382-01 2 155115637 155115637 G A GALNT13 Missense_Mutation p.E321K 0.07 deleterious(0) probably_damaging(1) TCGA-05-4382-01 2 166226697 166226697 A T SCN2A Missense_Mutation p.D1246V 0.22 deleterious(0) probably_damaging(1) TCGA-05-4382-01 2 166536110 166536110 G C CSRNP3 Missense_Mutation p.L535F 0.09 tolerated_low_confidence(0.07) probably_damaging(0.997) TCGA-05-4382-01 2 166737205 166737205 C A TTC21B Silent p.R1263R 0.14 TCGA-05-4382-01 2 166786229 166786229 C A TTC21B Silent p.G372G 0.09 TCGA-05-4382-01 2 166788366 166788366 C A TTC21B Missense_Mutation p.A266S 0.23 tolerated(0.11) benign(0.333) TCGA-05-4382-01 2 167168062 167168062 C G SCN9A Missense_Mutation p.G69R 0.15 tolerated(0.14) benign(0.315) TCGA-05-4382-01 2 167760236 167760236 G T XIRP2 Missense_Mutation p.D82Y 0.12 possibly_damaging(0.807) TCGA-05-4382-01 2 168100460 168100460 T A XIRP2 Missense_Mutation p.L853Q 0.11 probably_damaging(1) TCGA-05-4382-01 2 168101337 168101337 A T XIRP2 Silent p.T1145T 0.17 TCGA-05-4382-01 2 168107012 168107012 C A XIRP2 Missense_Mutation p.S3037Y 0.16 possibly_damaging(0.861) TCGA-05-4382-01 2 168114871 168114871 G T XIRP2 3'UTR 0.10 TCGA-05-4382-01 2 170356090 170356090 C G BBS5 Missense_Mutation p.A259G 0.12 tolerated(0.19) probably_damaging(0.983) TCGA-05-4382-01 2 173916400 173916400 C G RAPGEF4 Missense_Mutation p.Q981E 0.10 tolerated(1) benign(0.02) TCGA-05-4382-01 2 175986270 175986270 T A ATF2 Splice_Site p.X35_splice 0.17 TCGA-05-4382-01 2 176945442 176945442 G T EVX2 Missense_Mutation p.P275H 0.10 deleterious(0) benign(0.314) TCGA-05-4382-01 2 176972316 176972316 G T HOXD11 Missense_Mutation p.G78V 0.15 deleterious(0) benign(0.006) TCGA-05-4382-01 2 177036982 177036982 C T HOXD3 Missense_Mutation p.P427S 0.08 deleterious(0.02) probably_damaging(0.96) TCGA-05-4382-01 2 178305762 178305762 G T AGPS Missense_Mutation p.G236V 0.15 deleterious(0) probably_damaging(1) TCGA-05-4382-01 2 179403316 179403316 C T TTN Silent p.G33080G 0.15 TCGA-05-4382-01 2 179435496 179435496 G T TTN Silent p.I25121I 0.07 TCGA-05-4382-01 2 179438584 179438584 G A TTN Missense_Mutation p.S24092L 0.06 TCGA-05-4382-01 2 179468758 179468758 G T TTN Missense_Mutation p.A18219E 0.08 TCGA-05-4382-01 2 179477887 179477887 C A TTN Splice_Site p.X16550_splice 0.07 TCGA-05-4382-01 2 179479056 179479056 A T TTN Silent p.A16356A 0.15 TCGA-05-4382-01 2 179590276 179590276 G T TTN Silent p.V6885V 0.11 TCGA-05-4382-01 2 179596304 179596304 G A TTN Missense_Mutation p.P5730L 0.16 TCGA-05-4382-01 2 179598427 179598427 A G TTN Missense_Mutation p.V5230A 0.15 TCGA-05-4382-01 2 179605626 179605626 G C TTN Missense_Mutation p.Q4112E 0.16 TCGA-05-4382-01 2 179615422 179615422 T A TTN Intron 0.16 TCGA-05-4382-01 2 179633572 179633572 G T TTN Silent p.I2997I 0.16 TCGA-05-4382-01 2 179648929 179648929 G T TTN Missense_Mutation p.F881L 0.16 TCGA-05-4382-01 2 17998056 17998056 G T MSGN1 Missense_Mutation p.V91L 0.17 tolerated(0.11) benign(0.022) TCGA-05-4382-01 2 180835545 180835545 C T CWC22 Missense_Mutation p.E327K 0.06 tolerated(0.32) benign(0.058) TCGA-05-4382-01 2 182389954 182389954 C A ITGA4 Missense_Mutation p.L759I 0.18 deleterious(0.05) benign(0.036) TCGA-05-4382-01 2 185800875 185800875 G T ZNF804A Missense_Mutation p.R251I 0.20 deleterious(0) probably_damaging(0.986) TCGA-05-4382-01 2 185803359 185803359 C A ZNF804A Missense_Mutation p.T1079K 0.08 deleterious(0.02) benign(0.14) TCGA-05-4382-01 2 186672758 186672758 C A FSIP2 Missense_Mutation p.P6331H 0.17 benign(0.283) TCGA-05-4382-01 2 186673634 186673634 C A FSIP2 Missense_Mutation p.P6623Q 0.20 probably_damaging(0.999) TCGA-05-4382-01 2 18745191 18745191 G A NT5C1B Silent p.A568A 0.16 TCGA-05-4382-01 2 187608278 187608278 G T FAM171B Missense_Mutation p.V181F 0.09 deleterious(0) possibly_damaging(0.724) TCGA-05-4382-01 2 187627476 187627476 C - FAM171B Frame_Shift_Del p.P803Hfs*2 0.10 TCGA-05-4382-01 2 187702135 187702135 G T ZSWIM2 Missense_Mutation p.S214Y 0.08 deleterious(0) possibly_damaging(0.866) TCGA-05-4382-01 2 189898877 189898877 G - COL5A2 Frame_Shift_Del p.I1474Sfs*2 0.20 TCGA-05-4382-01 2 190323581 190323581 T A WDR75 Missense_Mutation p.D224E 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-05-4382-01 2 190323582 190323582 G T WDR75 Missense_Mutation p.G225C 0.16 deleterious(0) probably_damaging(1) TCGA-05-4382-01 2 190554279 190554279 G T ANKAR Missense_Mutation p.D210Y 0.18 deleterious(0) possibly_damaging(0.779) TCGA-05-4382-01 2 190660675 190660675 G T PMS1 Nonsense_Mutation p.E105* 0.15 TCGA-05-4382-01 2 191941029 191941029 A G STAT4 Missense_Mutation p.M99T 0.09 tolerated(0.19) benign(0.015) TCGA-05-4382-01 2 192194697 192194697 A T MYO1B Silent p.R96R 0.08 TCGA-05-4382-01 2 1926489 1926489 G T MYT1L Missense_Mutation p.P351Q 0.14 tolerated_low_confidence(0.44) benign(0.005) TCGA-05-4382-01 2 1926757 1926757 C G MYT1L Missense_Mutation p.V262L 0.10 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-05-4382-01 2 197541345 197541345 G C CCDC150 Missense_Mutation p.V444L 0.18 tolerated(0.24) benign(0.002) TCGA-05-4382-01 2 198950911 198950911 G T PLCL1 Silent p.A890A 0.09 TCGA-05-4382-01 2 198950912 198950912 G T PLCL1 Missense_Mutation p.V891F 0.09 tolerated(0.72) benign(0.017) TCGA-05-4382-01 2 201448175 201448175 G A SGOL2 Silent p.K1262K 0.16 TCGA-05-4382-01 2 207008741 207008741 C A NDUFS1 Splice_Site p.X343_splice 0.14 TCGA-05-4382-01 2 207008742 207008742 C A NDUFS1 Missense_Mutation p.M343I 0.15 tolerated(0.1) benign(0.001) TCGA-05-4382-01 2 207176120 207176120 C G ZDBF2 Missense_Mutation p.P2290A 0.11 tolerated(0.82) possibly_damaging(0.539) TCGA-05-4382-01 2 207176151 207176151 G C ZDBF2 Missense_Mutation p.R2300P 0.08 tolerated(0.24) benign(0) TCGA-05-4382-01 2 209010557 209010557 C A CRYGB Missense_Mutation p.D65Y 0.06 deleterious(0) probably_damaging(0.978) TCGA-05-4382-01 2 209028143 209028143 G - CRYGA Frame_Shift_Del p.Q13Rfs*26 0.11 TCGA-05-4382-01 2 211464252 211464252 C A CPS1 Missense_Mutation p.L512M 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-05-4382-01 2 212288980 212288980 A T ERBB4 Missense_Mutation p.D922E 0.12 deleterious(0.04) benign(0.048) TCGA-05-4382-01 2 21231857 21231857 G A APOB Missense_Mutation p.S2628L 0.17 probably_damaging(0.991) TCGA-05-4382-01 2 21234088 21234088 G T APOB Missense_Mutation p.N1884K 0.15 benign(0.323) TCGA-05-4382-01 2 21235298 21235298 A T APOB Missense_Mutation p.V1481D 0.24 possibly_damaging(0.832) TCGA-05-4382-01 2 21238276 21238276 G T APOB Silent p.G1158G 0.20 TCGA-05-4382-01 2 215645935 215645935 C A BARD1 Missense_Mutation p.E221D 0.08 tolerated(0.13) benign(0.003) TCGA-05-4382-01 2 216914082 216914082 G A PECR Silent p.S206S 0.09 TCGA-05-4382-01 2 217124200 217124200 G T MARCH4 Silent p.A356A 0.10 TCGA-05-4382-01 2 218749786 218749786 C - TNS1 Frame_Shift_Del p.K282Rfs*80 0.15 TCGA-05-4382-01 2 219875349 219875349 C T CCDC108 Missense_Mutation p.M1409I 0.23 tolerated(0.71) benign(0) TCGA-05-4382-01 2 219893021 219893021 G T CCDC108 Silent p.R585R 0.17 TCGA-05-4382-01 2 219894146 219894146 C T CCDC108 Silent p.V543V 0.12 TCGA-05-4382-01 2 220046857 220046857 A T FAM134A Missense_Mutation p.R380W 0.17 deleterious(0.01) possibly_damaging(0.502) TCGA-05-4382-01 2 220046971 220046971 C T FAM134A Missense_Mutation p.P418S 0.09 tolerated(0.19) benign(0.014) TCGA-05-4382-01 2 220238938 220238938 T C DNPEP 3'UTR 0.20 TCGA-05-4382-01 2 220352934 220352934 A T SPEG Missense_Mutation p.H2587L 0.16 probably_damaging(0.998) TCGA-05-4382-01 2 220399952 220399952 C A ASIC4 Missense_Mutation p.R487S 0.09 deleterious(0.02) possibly_damaging(0.461) TCGA-05-4382-01 2 220413975 220413975 C A TMEM198 Missense_Mutation p.L282I 0.17 tolerated(0.39) benign(0) TCGA-05-4382-01 2 220418377 220418377 G T OBSL1 Missense_Mutation p.H1636Q 0.10 tolerated(1) benign(0.001) TCGA-05-4382-01 2 223096856 223096856 C A PAX3 Missense_Mutation p.D245Y 0.17 deleterious(0) probably_damaging(1) TCGA-05-4382-01 2 227663167 227663167 C A IRS1 Silent p.A96A 0.22 TCGA-05-4382-01 2 228883020 228883020 C A SPHKAP Missense_Mutation p.E850D 0.04 tolerated(0.25) benign(0.005) TCGA-05-4382-01 2 228973593 228973593 G T SPHKAP Silent p.P67P 0.11 TCGA-05-4382-01 2 230456378 230456378 C A DNER Missense_Mutation p.R168L 0.20 tolerated(0.39) benign(0.086) TCGA-05-4382-01 2 231193546 231193546 G T SP140L Missense_Mutation p.R36M 0.17 deleterious(0) benign(0.041) TCGA-05-4382-01 2 232390050 232390050 C A NMUR1 Missense_Mutation p.G329C 0.20 tolerated(0.14) benign(0.06) TCGA-05-4382-01 2 232577908 232577908 C T PTMA 3'UTR 0.14 TCGA-05-4382-01 2 233321725 233321725 G T ALPI Missense_Mutation p.Q139H 0.22 deleterious(0.03) benign(0.023) TCGA-05-4382-01 2 233898903 233898903 G T NEU2 Silent p.A93A 0.17 TCGA-05-4382-01 2 234394426 234394426 G T USP40 Missense_Mutation p.P1143Q 0.10 deleterious(0.04) benign(0.396) TCGA-05-4382-01 2 234835272 234835272 G T TRPM8 Silent p.R30R 0.20 TCGA-05-4382-01 2 235950023 235950023 G T SH3BP4 Nonsense_Mutation p.E204* 0.17 TCGA-05-4382-01 2 238249368 238249368 G T COL6A3 Missense_Mutation p.P2731T 0.21 unknown(0) TCGA-05-4382-01 2 238303368 238303368 C A COL6A3 Nonsense_Mutation p.E191* 0.10 TCGA-05-4382-01 2 238484048 238484048 C T RAB17 Missense_Mutation p.E171K 0.10 deleterious(0.01) possibly_damaging(0.796) TCGA-05-4382-01 2 240009282 240009282 C A HDAC4 Missense_Mutation p.G801V 0.09 deleterious(0) probably_damaging(1) TCGA-05-4382-01 2 240056263 240056263 G A HDAC4 Missense_Mutation p.P352L 0.07 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 2 241631300 241631300 G T AQP12A 5'UTR 0.19 TCGA-05-4382-01 2 242195624 242195624 C A HDLBP Missense_Mutation p.R283L 0.11 tolerated(0.22) benign(0.015) TCGA-05-4382-01 2 242707190 242707190 G T D2HGDH Nonsense_Mutation p.E458* 0.17 TCGA-05-4382-01 2 242757869 242757869 C T NEU4 Missense_Mutation p.P330L 0.20 tolerated(0.5) benign(0.003) TCGA-05-4382-01 2 24406434 24406434 C T FAM228A Silent p.F107F 0.21 TCGA-05-4382-01 2 26502894 26502894 C T HADHB Missense_Mutation p.R282C 0.22 deleterious(0) possibly_damaging(0.477) TCGA-05-4382-01 2 26680812 26680812 G T OTOF 3'UTR 0.18 TCGA-05-4382-01 2 27001138 27001138 G A SLC35F6 Missense_Mutation p.R292H 0.18 deleterious(0) possibly_damaging(0.863) TCGA-05-4382-01 2 27016114 27016114 G T CENPA Silent p.R130R 0.12 TCGA-05-4382-01 2 27322123 27322123 G C KHK Missense_Mutation p.L208F 0.15 deleterious(0) probably_damaging(0.951) TCGA-05-4382-01 2 27360383 27360383 G T C2orf53 Missense_Mutation p.P272H 0.07 deleterious(0) probably_damaging(0.997) TCGA-05-4382-01 2 27462299 27462299 G A CAD Missense_Mutation p.R1785H 0.10 deleterious(0) probably_damaging(0.986) TCGA-05-4382-01 2 27560391 27560391 C T GTF3C2 Missense_Mutation p.E329K 0.11 deleterious(0.01) benign(0.176) TCGA-05-4382-01 2 28761238 28761238 T A PLB1 Missense_Mutation p.L203Q 0.08 deleterious(0) benign(0.066) TCGA-05-4382-01 2 29293581 29293581 C T C2orf71 Missense_Mutation p.A1183T 0.21 tolerated(0.11) benign(0.357) TCGA-05-4382-01 2 29416585 29416585 G T ALK Silent p.P1456P 0.10 TCGA-05-4382-01 2 29754890 29754890 C A ALK Missense_Mutation p.V349F 0.06 tolerated(0.07) probably_damaging(0.999) TCGA-05-4382-01 2 30975918 30975918 C A CAPN13 Splice_Site p.X363_splice 0.13 TCGA-05-4382-01 2 31168704 31168704 A T GALNT14 Missense_Mutation p.D234E 0.11 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 2 31168710 31168710 C A GALNT14 Silent p.V232V 0.23 TCGA-05-4382-01 2 32640813 32640813 G T BIRC6 Missense_Mutation p.R818S 0.16 benign(0.016) TCGA-05-4382-01 2 32740258 32740258 A T BIRC6 Silent p.S3590S 0.12 TCGA-05-4382-01 2 3691447 3691447 C T COLEC11 Silent p.A199A 0.12 TCGA-05-4382-01 2 37599510 37599510 C T QPCT Missense_Mutation p.H279Y 0.20 deleterious(0.03) benign(0.02) TCGA-05-4382-01 2 40656897 40656897 G T SLC8A1 Missense_Mutation p.A175D 0.11 deleterious(0) probably_damaging(0.996) TCGA-05-4382-01 2 42671100 42671100 T A KCNG3 Missense_Mutation p.S429C 0.13 deleterious(0.01) possibly_damaging(0.885) TCGA-05-4382-01 2 44527217 44527217 G T SLC3A1 Missense_Mutation p.K333N 0.08 tolerated(0.27) benign(0.156) TCGA-05-4382-01 2 48059590 48059590 C A FBXO11 Silent p.A432A 0.10 TCGA-05-4382-01 2 48896865 48896865 C T STON1-GTF2A1L Missense_Mutation p.S1032F 0.05 deleterious(0.05) benign(0.418) TCGA-05-4382-01 2 49190600 49190600 C A FSHR Nonsense_Mutation p.E454* 0.10 TCGA-05-4382-01 2 50149359 50149359 G T NRXN1 Missense_Mutation p.P1456Q 0.08 tolerated_low_confidence(0.54) benign(0.068) TCGA-05-4382-01 2 50847255 50847255 C A NRXN1 Missense_Mutation p.G449W 0.16 deleterious(0) probably_damaging(1) TCGA-05-4382-01 2 54125016 54125016 T A PSME4 Silent p.V1199V 0.24 TCGA-05-4382-01 2 63401863 63401863 A T WDPCP Missense_Mutation p.S674T 0.09 tolerated(0.49) benign(0.002) TCGA-05-4382-01 2 66670112 66670112 G T MEIS1 Missense_Mutation p.D188Y 0.24 deleterious(0) possibly_damaging(0.873) TCGA-05-4382-01 2 68415748 68415748 C A PPP3R1 Missense_Mutation p.V40L 0.10 tolerated(0.58) benign(0.001) TCGA-05-4382-01 2 69706164 69706164 C A AAK1 Missense_Mutation p.D867Y 0.06 deleterious(0.03) probably_damaging(0.997) TCGA-05-4382-01 2 70315923 70315923 G C PCBP1 Missense_Mutation p.E350Q 0.11 tolerated(0.24) possibly_damaging(0.517) TCGA-05-4382-01 2 71190322 71190322 C A ATP6V1B1 Missense_Mutation p.R314S 0.16 deleterious(0.01) probably_damaging(0.943) TCGA-05-4382-01 2 71839869 71839869 C T DYSF Silent p.I1440I 0.14 TCGA-05-4382-01 2 72359460 72359460 C T CYP26B1 Missense_Mutation p.V479I 0.22 tolerated(0.88) benign(0.023) TCGA-05-4382-01 2 73799562 73799562 G T ALMS1 Missense_Mutation p.D3519Y 0.21 probably_damaging(0.994) TCGA-05-4382-01 2 73800051 73800051 G C ALMS1 Missense_Mutation p.E3682Q 0.13 probably_damaging(0.966) TCGA-05-4382-01 2 74140716 74140716 C A ACTG2 Missense_Mutation p.L186I 0.09 tolerated_low_confidence(0.06) possibly_damaging(0.821) TCGA-05-4382-01 2 74328907 74328907 C A TET3 Silent p.L1529L 0.09 TCGA-05-4382-01 2 75928379 75928379 C A GCFC2 Missense_Mutation p.Q218H 0.14 tolerated(0.08) benign(0.033) TCGA-05-4382-01 2 77746569 77746569 G T LRRTM4 Nonsense_Mutation p.Y142* 0.23 TCGA-05-4382-01 2 79363232 79363232 G T REG1P RNA 0.18 TCGA-05-4382-01 2 79364468 79364468 C A REG1P Intron 0.25 TCGA-05-4382-01 2 84784942 84784942 T G DNAH6 Silent p.A562A 0.10 TCGA-05-4382-01 2 84784945 84784945 C T DNAH6 Silent p.F563F 0.10 TCGA-05-4382-01 2 85590289 85590289 G T ELMOD3 Missense_Mutation p.V67F 0.26 tolerated_low_confidence(0.06) possibly_damaging(0.904) TCGA-05-4382-01 2 85590290 85590290 G T ELMOD3 Splice_Site p.X67_splice 0.26 TCGA-05-4382-01 2 87085311 87085311 G T CD8B Missense_Mutation p.A91D 0.12 deleterious(0.03) benign(0.108) TCGA-05-4382-01 2 88409926 88409926 C A SMYD1 Missense_Mutation p.F456L 0.09 tolerated(0.08) benign(0.082) TCGA-05-4382-01 2 89513367 89513367 G A IGKV1-27 Missense_Mutation p.P6S 0.18 tolerated(0.05) benign(0.256) TCGA-05-4382-01 2 89975731 89975731 C A IGKV2D-30 Missense_Mutation p.L10M 0.18 deleterious(0.02) possibly_damaging(0.724) TCGA-05-4382-01 2 90121688 90121688 G T IGKV1D-17 Missense_Mutation p.G11W 0.08 tolerated(0.07) benign(0.308) TCGA-05-4382-01 2 95774150 95774150 C A MRPS5 Missense_Mutation p.R136L 0.20 tolerated(0.07) possibly_damaging(0.547) TCGA-05-4382-01 2 9676905 9676905 T G ADAM17 Missense_Mutation p.K95Q 0.11 tolerated(0.27) benign(0.013) TCGA-05-4382-01 2 96781416 96781416 G T ADRA2B Missense_Mutation p.P158Q 0.18 tolerated(0.53) benign(0.208) TCGA-05-4382-01 2 97166207 97166207 C A NEURL3 RNA 0.21 TCGA-05-4382-01 2 98996642 98996642 T C CNGA3 Missense_Mutation p.S74P 0.19 tolerated(0.14) benign(0.013) TCGA-05-4382-01 2 99169339 99169339 C T INPP4A Silent p.T423T 0.08 TCGA-05-4382-01 2 99413910 99413910 C A KIAA1211L Missense_Mutation p.G836V 0.18 deleterious(0) probably_damaging(0.996) TCGA-05-4382-01 3 10391822 10391822 G A ATP2B2 Missense_Mutation p.P793L 0.23 deleterious(0) probably_damaging(1) TCGA-05-4382-01 3 105264032 105264032 G T ALCAM Intron 0.14 TCGA-05-4382-01 3 111312388 111312388 C A ZBED2 3'UTR 0.21 TCGA-05-4382-01 3 111780676 111780676 G T TMPRSS7 Silent p.V325V 0.11 TCGA-05-4382-01 3 112064005 112064005 C A CD200 Silent p.T122T 0.11 TCGA-05-4382-01 3 112643989 112643989 G T CD200R1 Missense_Mutation p.T274N 0.13 tolerated(0.32) benign(0.075) TCGA-05-4382-01 3 112989746 112989746 C A BOC Missense_Mutation p.Q208K 0.10 tolerated(0.11) possibly_damaging(0.507) TCGA-05-4382-01 3 112991432 112991432 G A BOC Silent p.L281L 0.10 TCGA-05-4382-01 3 113955660 113955660 C T ZNF80 Missense_Mutation p.E88K 0.11 tolerated(1) benign(0.439) TCGA-05-4382-01 3 115342539 115342539 G C GAP43 5'UTR 0.13 TCGA-05-4382-01 3 118865608 118865608 C A C3orf30 Missense_Mutation p.S191Y 0.16 tolerated(0.12) probably_damaging(0.983) TCGA-05-4382-01 3 118909901 118909901 C A UPK1B Missense_Mutation p.Q140K 0.14 tolerated(1) benign(0.001) TCGA-05-4382-01 3 122340333 122340333 G T PARP15 Missense_Mutation p.C369F 0.09 tolerated(0.7) benign(0) TCGA-05-4382-01 3 123452994 123452994 C A MYLK Silent p.S283S 0.22 TCGA-05-4382-01 3 123456333 123456333 G T MYLK Missense_Mutation p.Q216K 0.12 tolerated(0.3) benign(0.156) TCGA-05-4382-01 3 124237357 124237357 A T KALRN 3'UTR 0.14 TCGA-05-4382-01 3 124492670 124492670 G A ITGB5 Missense_Mutation p.R595W 0.15 deleterious(0.02) benign(0.001) TCGA-05-4382-01 3 12545147 12545147 G T TSEN2 Missense_Mutation p.R232L 0.24 tolerated(0.74) benign(0.019) TCGA-05-4382-01 3 125877313 125877313 C A ALDH1L1 Silent p.R109R 0.25 TCGA-05-4382-01 3 126735383 126735383 G T PLXNA1 Missense_Mutation p.C1013F 0.11 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 3 127336223 127336223 G C MCM2 Silent p.T625T 0.11 TCGA-05-4382-01 3 12854499 12854499 G C CAND2 Silent p.L256L 0.22 TCGA-05-4382-01 3 128598521 128598521 G C ACAD9 5'UTR 0.08 TCGA-05-4382-01 3 128813856 128813856 C A RAB43 Missense_Mutation p.G121C 0.10 deleterious(0) probably_damaging(0.975) TCGA-05-4382-01 3 128813857 128813857 C A RAB43 Silent p.A120A 0.08 TCGA-05-4382-01 3 130282042 130282042 T C COL6A6 Silent p.R65R 0.11 TCGA-05-4382-01 3 132360962 132360962 C T ACAD11 Missense_Mutation p.D131N 0.11 deleterious(0.04) possibly_damaging(0.861) TCGA-05-4382-01 3 134898709 134898709 A T EPHB1 Silent p.P589P 0.12 TCGA-05-4382-01 3 134920489 134920489 C G EPHB1 Nonsense_Mutation p.Y768* 0.10 TCGA-05-4382-01 3 13679550 13679550 G T FBLN2 3'UTR 0.18 TCGA-05-4382-01 3 138762812 138762812 C A PRR23C Silent p.L217L 0.12 TCGA-05-4382-01 3 13896298 13896298 T A WNT7A Missense_Mutation p.S101C 0.17 deleterious(0) probably_damaging(0.981) TCGA-05-4382-01 3 140284952 140284952 G A CLSTN2 Missense_Mutation p.A909T 0.18 tolerated(0.26) benign(0.028) TCGA-05-4382-01 3 140397271 140397271 G T TRIM42 Missense_Mutation p.C67F 0.14 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 3 140419874 140419874 C T TRIM42 3'UTR 0.19 TCGA-05-4382-01 3 14547155 14547155 C T GRIP2 RNA 0.22 TCGA-05-4382-01 3 148759310 148759310 T A HLTF Missense_Mutation p.K781N 0.14 deleterious(0) probably_damaging(0.998) TCGA-05-4382-01 3 148791089 148791089 T A HLTF Missense_Mutation p.S184C 0.06 deleterious(0.01) benign(0.443) TCGA-05-4382-01 3 151134202 151134202 C T MED12L Nonsense_Mutation p.Q2099* 0.12 TCGA-05-4382-01 3 151163172 151163172 T A IGSF10 Nonsense_Mutation p.K1533* 0.10 TCGA-05-4382-01 3 164730802 164730802 A G SI Missense_Mutation p.I1343T 0.21 deleterious(0.01) possibly_damaging(0.857) TCGA-05-4382-01 3 164739041 164739041 C A SI Missense_Mutation p.R1077L 0.21 tolerated(0.09) possibly_damaging(0.468) TCGA-05-4382-01 3 164792404 164792404 G A SI Missense_Mutation p.P57L 0.10 tolerated(0.12) benign(0.014) TCGA-05-4382-01 3 167045790 167045790 G T ZBBX Missense_Mutation p.Q268K 0.13 deleterious(0) possibly_damaging(0.557) TCGA-05-4382-01 3 170140990 170140990 C A CLDN11 Nonsense_Mutation p.S89* 0.10 TCGA-05-4382-01 3 170198101 170198101 C A SLC7A14 Missense_Mutation p.R657L 0.15 deleterious(0) probably_damaging(0.987) TCGA-05-4382-01 3 170716031 170716031 C A SLC2A2 Missense_Mutation p.S442I 0.13 deleterious(0.05) possibly_damaging(0.616) TCGA-05-4382-01 3 173997440 173997440 G C NLGN1 Missense_Mutation p.G550A 0.12 deleterious(0) probably_damaging(0.997) TCGA-05-4382-01 3 17447954 17447954 T A TBC1D5 Missense_Mutation p.N78Y 0.15 deleterious(0) benign(0.181) TCGA-05-4382-01 3 180366130 180366130 C A CCDC39 Silent p.L395L 0.20 TCGA-05-4382-01 3 182605388 182605388 C T ATP11B Silent p.S910S 0.10 TCGA-05-4382-01 3 183960709 183960709 C A ALG3 Missense_Mutation p.G349V 0.12 deleterious(0) probably_damaging(1) TCGA-05-4382-01 3 185798879 185798879 C A ETV5 Missense_Mutation p.Q106H 0.12 deleterious(0.04) possibly_damaging(0.837) TCGA-05-4382-01 3 186338719 186338719 G T AHSG Nonstop_Mutation p.*368Yext*70 0.15 TCGA-05-4382-01 3 186461659 186461659 G T KNG1 3'Flank 0.14 TCGA-05-4382-01 3 192516720 192516720 G C MB21D2 Missense_Mutation p.Q311E 0.11 tolerated(0.19) possibly_damaging(0.569) TCGA-05-4382-01 3 26751994 26751994 G T LRRC3B 3'UTR 0.44 TCGA-05-4382-01 3 35723372 35723372 G A ARPP21 Silent p.Q43Q 0.12 TCGA-05-4382-01 3 35731613 35731613 G T ARPP21 Missense_Mutation p.D176Y 0.11 deleterious(0) probably_damaging(0.973) TCGA-05-4382-01 3 36779327 36779327 C A DCLK3 Missense_Mutation p.W275L 0.22 deleterious(0) possibly_damaging(0.448) TCGA-05-4382-01 3 38519453 38519453 G T ACVR2B Missense_Mutation p.G121V 0.12 tolerated(0.34) benign(0.002) TCGA-05-4382-01 3 38627390 38627390 A G SCN5A Missense_Mutation p.L860P 0.13 deleterious(0) probably_damaging(1) TCGA-05-4382-01 3 39228545 39228545 C T XIRP1 Missense_Mutation p.G798R 0.13 tolerated(0.27) probably_damaging(0.999) TCGA-05-4382-01 3 45637310 45637310 A T LIMD1 Missense_Mutation p.R313S 0.06 tolerated(0.09) benign(0.045) TCGA-05-4382-01 3 45707201 45707201 G A LIMD1 Missense_Mutation p.D524N 0.11 deleterious(0) probably_damaging(0.998) TCGA-05-4382-01 3 46062476 46062476 G T XCR1 Missense_Mutation p.P322T 0.22 tolerated(0.21) benign(0.017) TCGA-05-4382-01 3 47543343 47543343 T A ELP6 Splice_Site p.X108_splice 0.19 TCGA-05-4382-01 3 48677941 48677941 G A CELSR3 Missense_Mutation p.A3026V 0.26 tolerated_low_confidence(0.47) benign(0.002) TCGA-05-4382-01 3 49049550 49049550 G C WDR6 Missense_Mutation p.D225H 0.10 deleterious(0.03) benign(0.009) TCGA-05-4382-01 3 49725033 49725033 G T MST1 Missense_Mutation p.T104K 0.14 deleterious(0.01) possibly_damaging(0.725) TCGA-05-4382-01 3 50685560 50685560 G T MAPKAPK3 3'UTR 0.25 TCGA-05-4382-01 3 51994299 51994299 G C PCBP4 Missense_Mutation p.S98C 0.18 deleterious(0.02) possibly_damaging(0.744) TCGA-05-4382-01 3 52643680 52643680 T C PBRM1 Missense_Mutation p.N739S 0.27 deleterious(0) benign(0.285) TCGA-05-4382-01 3 52816058 52816058 C A ITIH1 Silent p.R264R 0.11 TCGA-05-4382-01 3 53137994 53137994 T A RFT1 Silent p.G359G 0.28 TCGA-05-4382-01 3 56779328 56779328 G A ARHGEF3 Missense_Mutation p.P291S 0.25 deleterious(0) probably_damaging(0.998) TCGA-05-4382-01 3 62751548 62751548 C A CADPS Nonsense_Mutation p.E185* 0.15 TCGA-05-4382-01 3 64004980 64004980 C A PSMD6 Missense_Mutation p.K163N 0.09 deleterious(0) probably_damaging(0.978) TCGA-05-4382-01 3 64526878 64526878 T C ADAMTS9 Missense_Mutation p.Y1805C 0.08 deleterious(0.03) possibly_damaging(0.542) TCGA-05-4382-01 3 64601143 64601143 C A ADAMTS9 Missense_Mutation p.G1015C 0.27 deleterious(0) probably_damaging(0.988) TCGA-05-4382-01 3 7456833 7456833 C A GRM7 Missense_Mutation p.T386K 0.22 tolerated(0.91) benign(0.272) TCGA-05-4382-01 3 97167557 97167557 T A EPHA6 Missense_Mutation p.F626Y 0.25 tolerated(0.07) benign(0.02) TCGA-05-4382-01 3 97887789 97887789 G A OR5H15 Silent p.L82L 0.10 TCGA-05-4382-01 3 97984066 97984066 T C OR5H6 Missense_Mutation p.V313A 0.23 deleterious(0) probably_damaging(0.927) TCGA-05-4382-01 3 98530083 98530084 TG C DCBLD2 Frame_Shift_Del p.S511Vfs*9 0.16 TCGA-05-4382-01 4 100458876 100458876 T A C4orf17 Silent p.V199V 0.09 TCGA-05-4382-01 4 104061453 104061453 T G CENPE Missense_Mutation p.Q1958P 0.10 benign(0.013) TCGA-05-4382-01 4 108985506 108985506 T A LEF1 Missense_Mutation p.Q384L 0.08 deleterious(0) probably_damaging(0.983) TCGA-05-4382-01 4 109672096 109672096 C A ETNPPL Missense_Mutation p.A233S 0.10 tolerated(0.4) possibly_damaging(0.764) TCGA-05-4382-01 4 109740455 109740455 C - COL25A1 Frame_Shift_Del p.E626Sfs*42 0.09 TCGA-05-4382-01 4 110791322 110791322 G A LRIT3 Missense_Mutation p.A473T 0.09 tolerated(0.18) probably_damaging(0.95) TCGA-05-4382-01 4 113356453 113356453 G T ALPK1 Missense_Mutation p.G1062W 0.08 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 4 114244917 114244917 G T ANK2 Intron 0.21 TCGA-05-4382-01 4 114278434 114278434 C T ANK2 Missense_Mutation p.P2887L 0.13 benign(0.003) TCGA-05-4382-01 4 114279550 114279550 C A ANK2 Missense_Mutation p.S3259Y 0.11 probably_damaging(0.952) TCGA-05-4382-01 4 114279551 114279551 C A ANK2 Silent p.S3259S 0.11 TCGA-05-4382-01 4 126240586 126240586 A T FAT4 Missense_Mutation p.E1007V 0.13 probably_damaging(1) TCGA-05-4382-01 4 126411167 126411167 G T FAT4 Missense_Mutation p.G4397V 0.11 probably_damaging(1) TCGA-05-4382-01 4 134071190 134071190 C G PCDH10 5'UTR 0.16 TCGA-05-4382-01 4 134072236 134072236 G T PCDH10 Missense_Mutation p.G314V 0.12 deleterious(0) probably_damaging(0.954) TCGA-05-4382-01 4 134072870 134072870 G T PCDH10 Missense_Mutation p.L525F 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-05-4382-01 4 13603176 13603176 T C BOD1L1 Missense_Mutation p.D1783G 0.07 probably_damaging(0.999) TCGA-05-4382-01 4 13603372 13603372 C A BOD1L1 Missense_Mutation p.G1718C 0.19 benign(0.126) TCGA-05-4382-01 4 13606630 13606630 G A BOD1L1 Missense_Mutation p.R632W 0.25 probably_damaging(1) TCGA-05-4382-01 4 143003332 143003332 G T INPP4B Missense_Mutation p.R832S 0.10 deleterious(0) probably_damaging(1) TCGA-05-4382-01 4 143003333 143003333 G T INPP4B Nonsense_Mutation p.C831* 0.10 TCGA-05-4382-01 4 143235915 143235915 C T INPP4B Missense_Mutation p.V125I 0.08 tolerated(0.23) benign(0.005) TCGA-05-4382-01 4 145627701 145627701 C T HHIP Silent p.L284L 0.18 TCGA-05-4382-01 4 147561247 147561247 C T POU4F2 Missense_Mutation p.H173Y 0.11 deleterious(0.04) possibly_damaging(0.775) TCGA-05-4382-01 4 147830185 147830185 C G TTC29 Missense_Mutation p.E131D 0.11 deleterious(0.04) possibly_damaging(0.652) TCGA-05-4382-01 4 152629137 152629137 C T PET112 Intron 0.11 TCGA-05-4382-01 4 155256115 155256115 G T DCHS2 Missense_Mutation p.P374H 0.13 deleterious(0.04) probably_damaging(0.945) TCGA-05-4382-01 4 155487754 155487754 C T FGB Silent p.T140T 0.09 TCGA-05-4382-01 4 156634571 156634571 C A GUCY1A3 Missense_Mutation p.Q470K 0.10 tolerated(0.1) benign(0.01) TCGA-05-4382-01 4 156711063 156711063 G T GUCY1B3 Missense_Mutation p.K165N 0.15 deleterious(0.01) benign(0.027) TCGA-05-4382-01 4 156751142 156751142 C A ASIC5 Nonsense_Mutation p.E462* 0.12 TCGA-05-4382-01 4 159566095 159566095 C A RXFP1 Missense_Mutation p.P384T 0.11 deleterious(0.01) probably_damaging(0.978) TCGA-05-4382-01 4 160251586 160251586 C G RAPGEF2 Missense_Mutation p.S307C 0.16 deleterious(0.02) benign(0.02) TCGA-05-4382-01 4 162307027 162307027 A G FSTL5 Missense_Mutation p.F806L 0.12 deleterious(0) probably_damaging(0.914) TCGA-05-4382-01 4 164507011 164507012 AG T MARCH1 Frame_Shift_Del p.F105Lfs*11 0.09 TCGA-05-4382-01 4 16590406 16590406 A T LDB2 Missense_Mutation p.M153K 0.20 deleterious(0) probably_damaging(0.997) TCGA-05-4382-01 4 166976235 166976235 G C TLL1 Missense_Mutation p.R511T 0.11 tolerated(0.05) benign(0.149) TCGA-05-4382-01 4 166999115 166999115 A T TLL1 Missense_Mutation p.D792V 0.11 deleterious(0) probably_damaging(0.936) TCGA-05-4382-01 4 167833809 167833809 G C SPOCK3 Missense_Mutation p.P149A 0.12 tolerated(0.13) possibly_damaging(0.595) TCGA-05-4382-01 4 169432821 169432821 G A PALLD Missense_Mutation p.E56K 0.15 deleterious(0) benign(0.424) TCGA-05-4382-01 4 172735780 172735780 G T GALNTL6 Missense_Mutation p.V17L 0.19 tolerated(0.44) benign(0.019) TCGA-05-4382-01 4 177067216 177067216 C A WDR17 Missense_Mutation p.P558T 0.13 tolerated(0.07) possibly_damaging(0.845) TCGA-05-4382-01 4 177142614 177142614 C A ASB5 Missense_Mutation p.E174D 0.11 deleterious(0.04) probably_damaging(0.95) TCGA-05-4382-01 4 17805188 17805188 C G DCAF16 Missense_Mutation p.E193Q 0.16 tolerated_low_confidence(0.1) possibly_damaging(0.607) TCGA-05-4382-01 4 183714264 183714264 A T TENM3 Missense_Mutation p.I2147L 0.11 tolerated(0.55) benign(0.141) TCGA-05-4382-01 4 2010531 2010531 C T NELFA Silent p.V63V 0.10 TCGA-05-4382-01 4 20552452 20552452 C A SLIT2 Missense_Mutation p.S831Y 0.08 deleterious(0) probably_damaging(0.99) TCGA-05-4382-01 4 22390299 22390299 C - GPR125 Frame_Shift_Del p.A999Pfs*38 0.09 TCGA-05-4382-01 4 22436933 22436933 C A GPR125 Splice_Site p.X481_splice 0.13 TCGA-05-4382-01 4 23886328 23886328 C A PPARGC1A Intron 0.06 TCGA-05-4382-01 4 2883688 2883688 G T ADD1 Missense_Mutation p.G87C 0.10 deleterious(0) probably_damaging(0.99) TCGA-05-4382-01 4 2883689 2883689 G T ADD1 Missense_Mutation p.G87V 0.10 deleterious(0) probably_damaging(0.972) TCGA-05-4382-01 4 4304252 4304252 G T ZBTB49 Missense_Mutation p.G230V 0.12 tolerated(0.13) benign(0.017) TCGA-05-4382-01 4 46314638 46314638 C A GABRA2 Missense_Mutation p.M117I 0.06 deleterious(0.03) benign(0.403) TCGA-05-4382-01 4 47033587 47033587 C A GABRB1 5'UTR 0.21 TCGA-05-4382-01 4 47570974 47570974 G T ATP10D Missense_Mutation p.G992W 0.06 deleterious(0) probably_damaging(0.945) TCGA-05-4382-01 4 47667122 47667122 G T CORIN Missense_Mutation p.L506I 0.14 tolerated(0.05) probably_damaging(0.976) TCGA-05-4382-01 4 48621362 48621362 A G FRYL Missense_Mutation p.Y114H 0.12 deleterious(0) probably_damaging(0.969) TCGA-05-4382-01 4 49032885 49032885 C A CWH43 Silent p.P472P 0.12 TCGA-05-4382-01 4 52860889 52860889 T G LRRC66 Missense_Mutation p.K767Q 0.07 deleterious(0.02) benign(0.055) TCGA-05-4382-01 4 52861975 52861975 A G LRRC66 Missense_Mutation p.W405R 0.06 tolerated(0.23) possibly_damaging(0.463) TCGA-05-4382-01 4 5332984 5332984 G C STK32B Missense_Mutation p.V100L 0.16 deleterious(0.04) probably_damaging(0.997) TCGA-05-4382-01 4 55139722 55139722 C G PDGFRA Silent p.S461S 0.12 TCGA-05-4382-01 4 55140699 55140699 C T PDGFRA Silent p.T520T 0.15 TCGA-05-4382-01 4 55155037 55155037 G A PDGFRA Missense_Mutation p.A916T 0.12 tolerated(0.14) benign(0.01) TCGA-05-4382-01 4 55968157 55968157 G A KDR Missense_Mutation p.R725C 0.10 deleterious(0) probably_damaging(0.927) TCGA-05-4382-01 4 56865740 56865740 G A CEP135 Missense_Mutation p.D737N 0.11 deleterious(0.05) probably_damaging(1) TCGA-05-4382-01 4 57181607 57181607 G A KIAA1211 Missense_Mutation p.A647T 0.10 tolerated(0.51) possibly_damaging(0.682) TCGA-05-4382-01 4 57181608 57181608 C A KIAA1211 Missense_Mutation p.A647E 0.09 tolerated(0.36) possibly_damaging(0.858) TCGA-05-4382-01 4 57182643 57182643 G T KIAA1211 Missense_Mutation p.R992L 0.14 deleterious(0) benign(0.433) TCGA-05-4382-01 4 57194321 57194321 C A KIAA1211 3'UTR 0.14 TCGA-05-4382-01 4 57390053 57390053 G T ARL9 3'UTR 0.09 TCGA-05-4382-01 4 62812745 62812745 G T LPHN3 Missense_Mutation p.V777F 0.08 deleterious(0) probably_damaging(0.989) TCGA-05-4382-01 4 66280039 66280039 G T EPHA5 Silent p.V550V 0.09 TCGA-05-4382-01 4 68504786 68504786 C A UBA6 Missense_Mutation p.K537N 0.08 tolerated(0.35) benign(0.401) TCGA-05-4382-01 4 68934426 68934426 G C TMPRSS11F Missense_Mutation p.A222G 0.16 deleterious(0) possibly_damaging(0.486) TCGA-05-4382-01 4 69693259 69693259 G T UGT2B10 Missense_Mutation p.D434Y 0.09 deleterious(0) probably_damaging(0.993) TCGA-05-4382-01 4 69962824 69962824 G A UGT2B7 Missense_Mutation p.V196I 0.10 tolerated(0.47) benign(0.015) TCGA-05-4382-01 4 70513224 70513224 C A UGT2A1 Nonsense_Mutation p.E47* 0.15 TCGA-05-4382-01 4 70513225 70513225 C A UGT2A1 Missense_Mutation p.K46N 0.15 deleterious(0) possibly_damaging(0.635) TCGA-05-4382-01 4 70810635 70810635 A T CSN1S1 Missense_Mutation p.Q157L 0.13 deleterious(0) possibly_damaging(0.607) TCGA-05-4382-01 4 71027333 71027333 C A C4orf40 3'UTR 0.07 TCGA-05-4382-01 4 71346841 71346841 C G MUC7 Missense_Mutation p.P127R 0.12 deleterious(0.01) possibly_damaging(0.683) TCGA-05-4382-01 4 71347516 71347516 G T MUC7 Missense_Mutation p.G352V 0.11 tolerated_low_confidence(0.29) unknown(0) TCGA-05-4382-01 4 71384525 71384525 C T AMTN Silent p.L11L 0.13 TCGA-05-4382-01 4 71497577 71497577 C A ENAM Silent p.P45P 0.09 TCGA-05-4382-01 4 73149155 73149155 T A ADAMTS3 Missense_Mutation p.I1106F 0.11 tolerated_low_confidence(0.26) benign(0.001) TCGA-05-4382-01 4 74007528 74007528 C A ANKRD17 Missense_Mutation p.M754I 0.19 benign(0.084) TCGA-05-4382-01 4 74447533 74447533 C A RASSF6 Splice_Site p.X273_splice 0.11 TCGA-05-4382-01 4 76532502 76532502 T A CDKL2 Missense_Mutation p.Q136L 0.14 deleterious(0.04) benign(0.004) TCGA-05-4382-01 4 76787428 76787428 G A PPEF2 Missense_Mutation p.P612S 0.14 tolerated(0.63) benign(0.382) TCGA-05-4382-01 4 76793254 76793254 G T PPEF2 Missense_Mutation p.L525M 0.15 tolerated(0.14) probably_damaging(0.999) TCGA-05-4382-01 4 76857250 76857250 T C NAAA Intron 0.09 TCGA-05-4382-01 4 77817798 77817798 C G SOWAHB Missense_Mutation p.S402T 0.12 deleterious(0) benign(0.153) TCGA-05-4382-01 4 79522677 79522677 G T ANXA3 Missense_Mutation p.R248S 0.11 deleterious(0.02) benign(0.005) TCGA-05-4382-01 4 80246689 80246689 T A NAA11 Missense_Mutation p.N115Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 4 82090872 82090872 T A PRKG2 Missense_Mutation p.I265L 0.11 deleterious(0) probably_damaging(0.992) TCGA-05-4382-01 4 8307701 8307701 C A HTRA3 Silent p.G400G 0.10 TCGA-05-4382-01 4 8418141 8418141 C T ACOX3 Silent p.A36A 0.19 TCGA-05-4382-01 4 85609394 85609394 C A WDFY3 Missense_Mutation p.V3130F 0.09 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 4 8584301 8584301 C A GPR78 Missense_Mutation p.R238S 0.20 deleterious(0) probably_damaging(0.994) TCGA-05-4382-01 4 87679886 87679886 C T PTPN13 Silent p.I1123I 0.13 TCGA-05-4382-01 4 87770121 87770121 C A SLC10A6 Nonsense_Mutation p.G50* 0.12 TCGA-05-4382-01 4 88363024 88363024 G T NUDT9 Missense_Mutation p.G163W 0.26 deleterious(0) probably_damaging(1) TCGA-05-4382-01 4 88767462 88767462 G T MEPE Missense_Mutation p.R481L 0.11 tolerated(0.14) benign(0.198) TCGA-05-4382-01 4 89679943 89679943 G C FAM13A Missense_Mutation p.S563W 0.15 deleterious(0) benign(0.049) TCGA-05-4382-01 4 90743477 90743477 C A SNCA Missense_Mutation p.A76S 0.10 tolerated(0.23) probably_damaging(0.996) TCGA-05-4382-01 4 90844382 90844382 G T MMRN1 Missense_Mutation p.G305V 0.07 tolerated(0.12) benign(0.319) TCGA-05-4382-01 4 90856977 90856977 C A MMRN1 Missense_Mutation p.R716S 0.09 tolerated(0.06) benign(0.189) TCGA-05-4382-01 4 90857618 90857618 A G MMRN1 Silent p.T929T 0.11 TCGA-05-4382-01 4 945483 945483 C G TMEM175 Missense_Mutation p.T119S 0.06 deleterious(0.03) benign(0.057) TCGA-05-4382-01 4 95162122 95162122 G C SMARCAD1 Missense_Mutation p.D224H 0.13 deleterious(0.02) possibly_damaging(0.672) TCGA-05-4382-01 4 96051084 96051084 G T BMPR1B Missense_Mutation p.W249C 0.11 deleterious(0) probably_damaging(1) TCGA-05-4382-01 5 102361025 102361025 A C PAM Silent p.S892S 0.13 TCGA-05-4382-01 5 102364680 102364680 G T PAM Missense_Mutation p.G946C 0.08 deleterious(0) unknown(0) TCGA-05-4382-01 5 10423937 10423937 G T MARCH6 Splice_Site p.X791_splice 0.12 TCGA-05-4382-01 5 112175975 112175975 G A APC Missense_Mutation p.D1562N 0.09 probably_damaging(0.999) TCGA-05-4382-01 5 122734967 122734967 G C CEP120 Missense_Mutation p.L159V 0.23 tolerated(0.12) benign(0.027) TCGA-05-4382-01 5 1242871 1242871 T C SLC6A18 Missense_Mutation p.S342P 0.10 tolerated(0.05) benign(0.029) TCGA-05-4382-01 5 126674906 126674906 C A MEGF10 Silent p.R71R 0.28 TCGA-05-4382-01 5 127522368 127522368 C G SLC12A2 3'UTR 0.17 TCGA-05-4382-01 5 128302064 128302064 C T SLC27A6 Silent p.D78D 0.13 TCGA-05-4382-01 5 131398035 131398035 G T IL3 Missense_Mutation p.A79S 0.07 tolerated(0.12) possibly_damaging(0.723) TCGA-05-4382-01 5 133509665 133509665 C A SKP1 Missense_Mutation p.D17Y 0.08 deleterious(0) probably_damaging(0.96) TCGA-05-4382-01 5 134366998 134366998 C T PITX1 Missense_Mutation p.V124M 0.25 tolerated(0.35) possibly_damaging(0.736) TCGA-05-4382-01 5 139889656 139889656 G T ANKHD1 Missense_Mutation p.A1332S 0.17 possibly_damaging(0.694) TCGA-05-4382-01 5 140175321 140175321 G T PCDHA2 Missense_Mutation p.G258W 0.08 deleterious_low_confidence(0) benign(0.385) TCGA-05-4382-01 5 140177024 140177024 G T PCDHA2 Intron 0.22 TCGA-05-4382-01 5 140182121 140182121 G T PCDHA3 Missense_Mutation p.D447Y 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-05-4382-01 5 140222067 140222067 C A PCDHA8 Nonsense_Mutation p.C387* 0.20 TCGA-05-4382-01 5 140235754 140235754 G T PCDHA10 Missense_Mutation p.G41C 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-05-4382-01 5 140237564 140237564 A T PCDHA10 Missense_Mutation p.Q644L 0.23 deleterious_low_confidence(0.01) benign(0.062) TCGA-05-4382-01 5 140242421 140242421 C G AC005609.1 Missense_Mutation p.M185I 0.13 benign(0.043) TCGA-05-4382-01 5 140347671 140347671 A T PCDHAC2 Silent p.T440T 0.19 TCGA-05-4382-01 5 140590170 140590170 C A PCDHB12 Missense_Mutation p.P564Q 0.17 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-05-4382-01 5 140627195 140627195 C A PCDHB15 Silent p.A683A 0.16 TCGA-05-4382-01 5 140720200 140720200 C G PCDHGA2 Missense_Mutation p.D554E 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-05-4382-01 5 140737049 140737049 C A PCDHGA4 Missense_Mutation p.A761E 0.18 deleterious_low_confidence(0) possibly_damaging(0.869) TCGA-05-4382-01 5 140740131 140740131 C G PCDHGB2 Silent p.G143G 0.25 TCGA-05-4382-01 5 140753939 140753939 G T PCDHGA6 Missense_Mutation p.A97S 0.18 deleterious_low_confidence(0.02) benign(0.196) TCGA-05-4382-01 5 141041471 141041471 C A ARAP3 Intron 0.16 TCGA-05-4382-01 5 141059632 141059632 G A ARAP3 Missense_Mutation p.S141F 0.07 deleterious(0.01) benign(0.002) TCGA-05-4382-01 5 142273824 142273824 G C ARHGAP26 Missense_Mutation p.V170L 0.07 tolerated(0.29) benign(0.299) TCGA-05-4382-01 5 145499985 145499985 T A LARS Missense_Mutation p.N1092Y 0.21 tolerated(0.06) benign(0.002) TCGA-05-4382-01 5 146257616 146257616 T C PPP2R2B Intron 0.11 TCGA-05-4382-01 5 148406410 148406410 G T SH3TC2 Intron 0.11 TCGA-05-4382-01 5 148685935 148685935 C A AFAP1L1 Missense_Mutation p.A168E 0.11 tolerated(0.15) benign(0.04) TCGA-05-4382-01 5 149264109 149264109 G A PDE6A Nonsense_Mutation p.Q654* 0.17 TCGA-05-4382-01 5 150310650 150310650 T A ZNF300P1 RNA 0.17 TCGA-05-4382-01 5 151055721 151055721 C G SPARC Missense_Mutation p.C10S 0.12 tolerated_low_confidence(0.05) probably_damaging(0.996) TCGA-05-4382-01 5 152870273 152870273 G A GRIA1 5'Flank 0.19 TCGA-05-4382-01 5 153182038 153182038 C T GRIA1 Silent p.S846S 0.07 TCGA-05-4382-01 5 156991421 156991421 C G ADAM19 Missense_Mutation p.A71P 0.18 deleterious(0) probably_damaging(0.964) TCGA-05-4382-01 5 157214823 157214823 G A CLINT1 Missense_Mutation p.P588L 0.27 deleterious(0.03) benign(0.319) TCGA-05-4382-01 5 157233056 157233056 C A CLINT1 Nonsense_Mutation p.E254* 0.19 TCGA-05-4382-01 5 15936789 15936789 G T FBXL7 Missense_Mutation p.A324S 0.18 tolerated(0.83) benign(0) TCGA-05-4382-01 5 15936818 15936818 C A FBXL7 Missense_Mutation p.D333E 0.08 deleterious(0) probably_damaging(0.987) TCGA-05-4382-01 5 160763691 160763691 C A GABRB2 Missense_Mutation p.Q209H 0.20 deleterious(0) probably_damaging(1) TCGA-05-4382-01 5 169015427 169015427 G C SPDL1 Missense_Mutation p.A3P 0.16 deleterious(0.04) possibly_damaging(0.558) TCGA-05-4382-01 5 169535124 169535124 A G FOXI1 Missense_Mutation p.R216G 0.07 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 5 170145847 170145847 C T KCNIP1 Silent p.T60T 0.19 TCGA-05-4382-01 5 171509466 171509466 C T STK10 Missense_Mutation p.R618H 0.19 deleterious(0) possibly_damaging(0.9) TCGA-05-4382-01 5 172196762 172196763 - A DUSP1 Frame_Shift_Ins p.S185Qfs*31 0.08 TCGA-05-4382-01 5 175716848 175716848 G C SIMC1 Intron 0.21 TCGA-05-4382-01 5 176024932 176024932 C A GPRIN1 Missense_Mutation p.G635V 0.12 tolerated(0.12) possibly_damaging(0.836) TCGA-05-4382-01 5 176026853 176026853 C A GPRIN1 5'UTR 0.19 TCGA-05-4382-01 5 176315748 176315748 T A HK3 Missense_Mutation p.Q344H 0.09 tolerated(0.06) benign(0.008) TCGA-05-4382-01 5 177421183 177421183 C T PROP1 Missense_Mutation p.G89E 0.17 tolerated(0.12) probably_damaging(0.94) TCGA-05-4382-01 5 178634575 178634575 G A ADAMTS2 Missense_Mutation p.S277F 0.14 deleterious(0) probably_damaging(1) TCGA-05-4382-01 5 179696296 179696296 C A MAPK9 Missense_Mutation p.C79F 0.19 tolerated(0.7) possibly_damaging(0.864) TCGA-05-4382-01 5 180219359 180219359 C A MGAT1 Missense_Mutation p.A205S 0.18 benign(0.271) TCGA-05-4382-01 5 21765193 21765193 G T CDH12 Missense_Mutation p.T470N 0.11 tolerated(0.25) benign(0.317) TCGA-05-4382-01 5 21854814 21854814 C A CDH12 Missense_Mutation p.Q204H 0.18 tolerated(0.18) benign(0.133) TCGA-05-4382-01 5 23521227 23521227 G A PRDM9 Silent p.Q149Q 0.06 TCGA-05-4382-01 5 24491830 24491830 G C CDH10 Missense_Mutation p.S577R 0.14 deleterious(0) probably_damaging(0.985) TCGA-05-4382-01 5 26906170 26906170 G T CDH9 Missense_Mutation p.Q237K 0.10 tolerated(0.05) probably_damaging(0.984) TCGA-05-4382-01 5 32089569 32089569 C A PDZD2 Silent p.V2005V 0.09 TCGA-05-4382-01 5 32355983 32355983 C G ZFR Silent p.P1036P 0.07 TCGA-05-4382-01 5 32789343 32789343 G T NPR3 3'UTR 0.14 TCGA-05-4382-01 5 33453500 33453500 G T TARS Missense_Mutation p.D179Y 0.17 deleterious(0) benign(0.432) TCGA-05-4382-01 5 33576991 33576991 G T ADAMTS12 Missense_Mutation p.A1047E 0.17 tolerated(0.7) benign(0.014) TCGA-05-4382-01 5 33937208 33937208 C A RXFP3 Silent p.V121V 0.15 TCGA-05-4382-01 5 344053 344053 G A AHRR Silent p.R16R 0.11 TCGA-05-4382-01 5 3601189 3601189 G T IRX1 3'UTR 0.29 TCGA-05-4382-01 5 40775031 40775031 T C PRKAA1 Missense_Mutation p.E136G 0.10 tolerated_low_confidence(0.14) benign(0.001) TCGA-05-4382-01 5 40979846 40979846 G T C7 Missense_Mutation p.A729S 0.09 deleterious(0.03) possibly_damaging(0.612) TCGA-05-4382-01 5 41038867 41038867 C T MROH2B Missense_Mutation p.V729I 0.19 tolerated(0.6) benign(0.008) TCGA-05-4382-01 5 41181563 41181563 C A C6 Silent p.G275G 0.15 TCGA-05-4382-01 5 43174846 43174846 G T ZNF131 Missense_Mutation p.V461L 0.28 deleterious(0.05) benign(0.054) TCGA-05-4382-01 5 52097598 52097598 G T PELO Missense_Mutation p.G361V 0.13 deleterious(0) probably_damaging(1) TCGA-05-4382-01 5 52367778 52367778 A C ITGA2 Missense_Mutation p.D749A 0.09 deleterious(0) probably_damaging(0.981) TCGA-05-4382-01 5 64976515 64976515 C A SGTB Missense_Mutation p.A196S 0.09 deleterious(0) possibly_damaging(0.612) TCGA-05-4382-01 5 75954354 75954354 T A IQGAP2 Missense_Mutation p.D797E 0.17 deleterious(0.01) benign(0.106) TCGA-05-4382-01 5 76259265 76259265 G T CRHBP Missense_Mutation p.C264F 0.17 deleterious(0) probably_damaging(0.973) TCGA-05-4382-01 5 78324471 78324471 C G DMGDH Missense_Mutation p.W606S 0.06 deleterious(0) probably_damaging(1) TCGA-05-4382-01 5 78328593 78328593 C A DMGDH Silent p.L478L 0.06 TCGA-05-4382-01 5 78347268 78347268 T C DMGDH Missense_Mutation p.Y196C 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-05-4382-01 5 78350088 78350088 C A DMGDH Silent p.R153R 0.22 TCGA-05-4382-01 5 78573766 78573766 G T JMY Missense_Mutation p.V356L 0.18 deleterious(0.02) possibly_damaging(0.744) TCGA-05-4382-01 5 79454738 79454738 C A SERINC5 Missense_Mutation p.G303C 0.06 deleterious(0.02) probably_damaging(0.967) TCGA-05-4382-01 5 80655832 80655832 A G ACOT12 Missense_Mutation p.L129P 0.19 tolerated(0.2) possibly_damaging(0.866) TCGA-05-4382-01 5 82816053 82816053 C T VCAN Missense_Mutation p.T643I 0.07 tolerated(0.05) possibly_damaging(0.666) TCGA-05-4382-01 5 82832966 82832966 G C VCAN Missense_Mutation p.D1382H 0.19 deleterious(0.03) possibly_damaging(0.67) TCGA-05-4382-01 5 82835850 82835850 G C VCAN Missense_Mutation p.G2343A 0.07 tolerated(0.33) benign(0.019) TCGA-05-4382-01 5 82837427 82837427 C G VCAN Missense_Mutation p.H2869D 0.10 tolerated(0.1) benign(0.276) TCGA-05-4382-01 5 82937398 82937398 T C HAPLN1 Missense_Mutation p.T328A 0.22 tolerated(0.74) benign(0.01) TCGA-05-4382-01 5 82948412 82948412 C T HAPLN1 Missense_Mutation p.R111K 0.10 deleterious(0) probably_damaging(0.924) TCGA-05-4382-01 5 90012412 90012412 C A GPR98 Silent p.R3105R 0.16 TCGA-05-4382-01 5 94248658 94248658 T A MCTP1 Silent p.L458L 0.09 TCGA-05-4382-01 5 95748019 95748019 T C PCSK1 Intron 0.11 TCGA-05-4382-01 5 96430680 96430680 G T LIX1 Silent p.A207A 0.09 TCGA-05-4382-01 6 100911441 100911441 C A SIM1 5'UTR 0.09 TCGA-05-4382-01 6 102483357 102483357 G C GRIK2 Missense_Mutation p.E743Q 0.09 deleterious(0) possibly_damaging(0.896) TCGA-05-4382-01 6 10556854 10556854 C - GCNT2 Intron 0.08 TCGA-05-4382-01 6 10586723 10586723 C T GCNT2 Intron 0.23 TCGA-05-4382-01 6 107391138 107391138 G A BEND3 Silent p.F419F 0.10 TCGA-05-4382-01 6 112476088 112476088 T C LAMA4 Missense_Mutation p.N674S 0.19 tolerated(0.51) benign(0.001) TCGA-05-4382-01 6 117704587 117704587 C A ROS1 Missense_Mutation p.V797F 0.06 deleterious(0) possibly_damaging(0.646) TCGA-05-4382-01 6 118228986 118228986 G T SLC35F1 Missense_Mutation p.G33C 0.38 deleterious_low_confidence(0.03) benign(0.129) TCGA-05-4382-01 6 119301338 119301338 G A FAM184A Nonsense_Mutation p.Q756* 0.06 TCGA-05-4382-01 6 126203632 126203632 G A NCOA7 Missense_Mutation p.E212K 0.11 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 6 127611311 127611311 G C ECHDC1 Silent p.L209L 0.07 TCGA-05-4382-01 6 127898540 127898540 G C C6orf58 Missense_Mutation p.Q70H 0.22 tolerated(0.13) probably_damaging(0.927) TCGA-05-4382-01 6 130761606 130761606 C A TMEM200A Silent p.A13A 0.19 TCGA-05-4382-01 6 130762699 130762699 G T TMEM200A Missense_Mutation p.A378S 0.11 tolerated(0.24) possibly_damaging(0.73) TCGA-05-4382-01 6 131201331 131201331 C A EPB41L2 Missense_Mutation p.V617L 0.10 tolerated(0.58) benign(0.004) TCGA-05-4382-01 6 131917827 131917827 G C MED23 Missense_Mutation p.A870G 0.18 deleterious(0) probably_damaging(0.996) TCGA-05-4382-01 6 132874334 132874334 A T TAAR8 Missense_Mutation p.Y168F 0.08 tolerated(0.38) benign(0.181) TCGA-05-4382-01 6 143759805 143759805 T A ADAT2 Missense_Mutation p.E41D 0.09 deleterious(0) probably_damaging(1) TCGA-05-4382-01 6 144758883 144758883 G T UTRN Splice_Site p.X414_splice 0.07 TCGA-05-4382-01 6 150289779 150289779 C T ULBP1 Missense_Mutation p.P41L 0.15 tolerated(0.21) benign(0.139) TCGA-05-4382-01 6 151265679 151265679 G T MTHFD1L Missense_Mutation p.A500S 0.27 deleterious(0.01) probably_damaging(0.971) TCGA-05-4382-01 6 151694769 151694769 C A ZBTB2 Missense_Mutation p.D2Y 0.07 deleterious(0) possibly_damaging(0.819) TCGA-05-4382-01 6 155129838 155129838 G T SCAF8 Missense_Mutation p.G378W 0.07 deleterious_low_confidence(0) unknown(0) TCGA-05-4382-01 6 155129839 155129839 G T SCAF8 Missense_Mutation p.G378V 0.07 deleterious_low_confidence(0.02) unknown(0) TCGA-05-4382-01 6 155761165 155761165 G T NOX3 Missense_Mutation p.A198D 0.11 deleterious(0.01) benign(0.175) TCGA-05-4382-01 6 160968856 160968856 G T LPA Missense_Mutation p.P1757T 0.06 deleterious(0.01) benign(0.023) TCGA-05-4382-01 6 160998186 160998186 G T LPA Missense_Mutation p.P1538Q 0.06 deleterious(0) probably_damaging(0.998) TCGA-05-4382-01 6 161469311 161469311 C A MAP3K4 Intron 0.12 TCGA-05-4382-01 6 165711483 165711483 G T C6orf118 Silent p.A348A 0.13 TCGA-05-4382-01 6 165801829 165801829 G T PDE10A Silent p.T590T 0.11 TCGA-05-4382-01 6 166733691 166733691 C A SFT2D1 3'UTR 0.16 TCGA-05-4382-01 6 167711556 167711556 C A UNC93A Missense_Mutation p.T208N 0.21 tolerated(0.08) benign(0.104) TCGA-05-4382-01 6 168999530 168999530 C A SMOC2 Missense_Mutation p.L235M 0.05 deleterious(0.01) possibly_damaging(0.865) TCGA-05-4382-01 6 17799600 17799600 C G KIF13A Missense_Mutation p.W896S 0.09 deleterious(0) probably_damaging(0.998) TCGA-05-4382-01 6 18148127 18148127 C A TPMT Missense_Mutation p.D54Y 0.16 deleterious(0) probably_damaging(0.927) TCGA-05-4382-01 6 25777118 25777118 T A SLC17A4 Missense_Mutation p.V400E 0.27 deleterious(0.01) possibly_damaging(0.841) TCGA-05-4382-01 6 25819932 25819932 C A SLC17A1 Missense_Mutation p.R140L 0.14 deleterious(0) probably_damaging(0.996) TCGA-05-4382-01 6 26021048 26021048 T A HIST1H3A Missense_Mutation p.C111S 0.11 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-05-4382-01 6 26032069 26032069 C T HIST1H3B Missense_Mutation p.E74K 0.17 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-05-4382-01 6 26124779 26124779 G T HIST1H2AC Missense_Mutation p.G107C 0.23 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-05-4382-01 6 26157291 26157291 G T HIST1H1E 3'UTR 0.06 TCGA-05-4382-01 6 26199826 26199826 G T HIST1H2BF Missense_Mutation p.G14C 0.11 deleterious_low_confidence(0) unknown(0) TCGA-05-4382-01 6 26271483 26271483 G T HIST1H3G Missense_Mutation p.P44T 0.09 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-05-4382-01 6 26388252 26388252 A T BTN2A2 Nonsense_Mutation p.K152* 0.17 TCGA-05-4382-01 6 26388253 26388253 A T BTN2A2 Missense_Mutation p.K152M 0.18 deleterious(0.04) benign(0.285) TCGA-05-4382-01 6 26431801 26431801 G T BTN2A3P RNA 0.13 TCGA-05-4382-01 6 26431802 26431802 G T BTN2A3P RNA 0.13 TCGA-05-4382-01 6 2749382 2749382 A G MYLK4 Silent p.S49S 0.08 TCGA-05-4382-01 6 29079941 29079941 G T OR2J3 Nonsense_Mutation p.E92* 0.13 TCGA-05-4382-01 6 29364690 29364690 T C OR12D2 Missense_Mutation p.S72P 0.22 tolerated(0.08) probably_damaging(0.933) TCGA-05-4382-01 6 29599290 29599290 G A GABBR1 Missense_Mutation p.P58S 0.05 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-05-4382-01 6 29633942 29633942 G T MOG Missense_Mutation p.W150C 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-05-4382-01 6 29633943 29633943 G T MOG Missense_Mutation p.V151L 0.16 tolerated(0.31) benign(0.026) TCGA-05-4382-01 6 29637972 29637972 C A MOG Intron 0.10 TCGA-05-4382-01 6 30131749 30131749 C G TRIM15 Missense_Mutation p.N96K 0.09 tolerated(0.3) benign(0.012) TCGA-05-4382-01 6 30138348 30138348 C T TRIM15 Missense_Mutation p.H268Y 0.25 tolerated(0.82) benign(0.173) TCGA-05-4382-01 6 31599436 31599436 G T PRRC2A Nonsense_Mutation p.E996* 0.13 TCGA-05-4382-01 6 31657481 31657481 C A ABHD16A Missense_Mutation p.G320W 0.10 deleterious(0) probably_damaging(0.998) TCGA-05-4382-01 6 31657482 31657482 C A ABHD16A Splice_Site p.X320_splice 0.10 TCGA-05-4382-01 6 31675821 31675821 G T LY6G6F Missense_Mutation p.G186W 0.09 deleterious(0.01) probably_damaging(0.979) TCGA-05-4382-01 6 31777852 31777852 G A HSPA1L Missense_Mutation p.T633I 0.12 deleterious_low_confidence(0.03) benign(0.024) TCGA-05-4382-01 6 32135778 32135778 G A EGFL8 3'UTR 0.10 TCGA-05-4382-01 6 32811806 32811806 C G PSMB8 5'UTR 0.18 TCGA-05-4382-01 6 32811807 32811807 G T PSMB8 5'UTR 0.19 TCGA-05-4382-01 6 32942346 32942346 C T BRD2 Missense_Mutation p.P46L 0.10 deleterious(0.05) benign(0.168) TCGA-05-4382-01 6 33646533 33646533 G T ITPR3 Missense_Mutation p.V1297L 0.25 deleterious(0.01) benign(0.394) TCGA-05-4382-01 6 33648392 33648392 G T ITPR3 Missense_Mutation p.V1471F 0.26 tolerated(0.15) possibly_damaging(0.744) TCGA-05-4382-01 6 33996102 33996102 C G GRM4 Silent p.L828L 0.06 TCGA-05-4382-01 6 34392515 34392515 G C RPS10 Missense_Mutation p.L85V 0.08 deleterious(0.01) probably_damaging(0.979) TCGA-05-4382-01 6 35090037 35090037 G T TCP11 Silent p.L158L 0.10 TCGA-05-4382-01 6 36339228 36339228 C A ETV7 Missense_Mutation p.R181S 0.10 tolerated(0.38) benign(0.001) TCGA-05-4382-01 6 36442578 36442578 A C KCTD20 Missense_Mutation p.D58A 0.20 deleterious_low_confidence(0.02) benign(0.099) TCGA-05-4382-01 6 36712915 36712915 G T CPNE5 Silent p.A447A 0.12 TCGA-05-4382-01 6 37612388 37612388 G C MDGA1 Silent p.G762G 0.07 TCGA-05-4382-01 6 37620025 37620025 G A MDGA1 Silent p.H358H 0.19 TCGA-05-4382-01 6 38885138 38885138 C G DNAH8 Missense_Mutation p.P3205A 0.07 benign(0.248) TCGA-05-4382-01 6 38980322 38980322 T A DNAH8 Silent p.T4324T 0.08 TCGA-05-4382-01 6 39271732 39271732 C A KCNK17 Splice_Site p.X230_splice 0.06 TCGA-05-4382-01 6 41184896 41184896 C A TREML3P RNA 0.13 TCGA-05-4382-01 6 41533580 41533580 G A FOXP4 Missense_Mutation p.D28N 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.783) TCGA-05-4382-01 6 41652411 41652411 T A TFEB Missense_Mutation p.T453S 0.08 tolerated(1) probably_damaging(0.973) TCGA-05-4382-01 6 42582899 42582899 A T UBR2 Missense_Mutation p.D359V 0.11 deleterious(0) probably_damaging(0.986) TCGA-05-4382-01 6 43266099 43266099 G T SLC22A7 Translation_Start_Site p.M1? 0.18 deleterious(0) possibly_damaging(0.72) TCGA-05-4382-01 6 44081782 44081782 C G MRPL14 Missense_Mutation p.G79A 0.09 deleterious(0) probably_damaging(0.992) TCGA-05-4382-01 6 45870809 45870809 G T CLIC5 3'UTR 0.08 TCGA-05-4382-01 6 49415406 49415406 T G MUT Silent p.R513R 0.05 TCGA-05-4382-01 6 51497480 51497480 G A PKHD1 Missense_Mutation p.P3850S 0.08 deleterious(0) probably_damaging(1) TCGA-05-4382-01 6 51915060 51915060 C A PKHD1 Missense_Mutation p.G725V 0.15 deleterious(0) probably_damaging(0.998) TCGA-05-4382-01 6 54791332 54791332 G T FAM83B Missense_Mutation p.R203M 0.11 deleterious(0) probably_damaging(0.998) TCGA-05-4382-01 6 55113565 55113565 G C HCRTR2 Missense_Mutation p.E118Q 0.06 deleterious(0.03) probably_damaging(0.997) TCGA-05-4382-01 6 55145212 55145212 G T HCRTR2 Missense_Mutation p.A359S 0.05 deleterious(0.02) benign(0.219) TCGA-05-4382-01 6 55924961 55924961 C A COL21A1 Silent p.L821L 0.22 TCGA-05-4382-01 6 56468774 56468774 C A DST Intron 0.09 TCGA-05-4382-01 6 56504070 56504070 C A DST Missense_Mutation p.R447L 0.07 probably_damaging(0.999) TCGA-05-4382-01 6 57246880 57246880 G T PRIM2 Nonsense_Mutation p.E203* 0.10 TCGA-05-4382-01 6 57512670 57512670 G A PRIM2 3'UTR 0.06 TCGA-05-4382-01 6 66063494 66063494 C A EYS Missense_Mutation p.G439V 0.06 deleterious(0.05) benign(0.344) TCGA-05-4382-01 6 70049343 70049343 G T BAI3 Missense_Mutation p.D1136Y 0.07 deleterious(0) probably_damaging(0.946) TCGA-05-4382-01 6 70948970 70948970 C T COL9A1 Missense_Mutation p.G700D 0.18 probably_damaging(1) TCGA-05-4382-01 6 74116137 74116137 C A DDX43 Silent p.A286A 0.09 TCGA-05-4382-01 6 74520799 74520799 G T CD109 Missense_Mutation p.G1211W 0.07 deleterious(0) possibly_damaging(0.664) TCGA-05-4382-01 6 75892889 75892889 G A COL12A1 Missense_Mutation p.P590S 0.06 probably_damaging(0.993) TCGA-05-4382-01 6 76018597 76018597 G A FILIP1 Missense_Mutation p.S1151L 0.07 tolerated(0.65) benign(0.4) TCGA-05-4382-01 6 7727594 7727594 A T BMP6 Missense_Mutation p.M136L 0.09 tolerated(0.11) probably_damaging(0.99) TCGA-05-4382-01 6 7899820 7899820 C T TXNDC5 Missense_Mutation p.E170K 0.11 tolerated(0.1) benign(0.137) TCGA-05-4382-01 6 80197277 80197277 T A LCA5 Missense_Mutation p.E513V 0.06 deleterious(0) possibly_damaging(0.799) TCGA-05-4382-01 6 84799172 84799172 C - MRAP2 Frame_Shift_Del p.Q198Rfs*14 0.13 TCGA-05-4382-01 6 87725346 87725346 G A HTR1E Nonsense_Mutation p.W98* 0.09 TCGA-05-4382-01 6 87796106 87796106 C A CGA Silent p.P45P 0.19 TCGA-05-4382-01 6 87969756 87969756 G T ZNF292 Missense_Mutation p.A2137S 0.06 deleterious(0) probably_damaging(0.986) TCGA-05-4382-01 6 90661411 90661411 A G BACH2 Silent p.D138D 0.10 TCGA-05-4382-01 7 100075602 100075602 C A TSC22D4 Missense_Mutation p.E20D 0.26 deleterious_low_confidence(0) benign(0.015) TCGA-05-4382-01 7 100190547 100190547 C T FBXO24 Missense_Mutation p.R272W 0.08 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-05-4382-01 7 100349995 100349995 C A ZAN Missense_Mutation p.P756Q 0.17 benign(0.003) TCGA-05-4382-01 7 100675863 100675863 G C MUC17 Missense_Mutation p.S389T 0.11 benign(0.341) TCGA-05-4382-01 7 100807818 100807818 G T VGF Missense_Mutation p.Q103K 0.14 deleterious_low_confidence(0.03) benign(0.365) TCGA-05-4382-01 7 101256815 101256815 G A MYL10 Silent p.C207C 0.10 TCGA-05-4382-01 7 103004617 103004617 G A PSMC2 Missense_Mutation p.E207K 0.08 tolerated(0.16) benign(0.134) TCGA-05-4382-01 7 103138649 103138649 C T RELN Nonsense_Mutation p.W2906* 0.19 TCGA-05-4382-01 7 103162509 103162509 C A RELN Missense_Mutation p.C2543F 0.10 deleterious(0) probably_damaging(0.998) TCGA-05-4382-01 7 103252227 103252227 G T RELN Missense_Mutation p.A909D 0.08 tolerated(0.52) benign(0.294) TCGA-05-4382-01 7 103474106 103474106 G C RELN Missense_Mutation p.D117E 0.09 tolerated(0.41) benign(0.43) TCGA-05-4382-01 7 103969268 103969268 C A LHFPL3 Missense_Mutation p.A14E 0.10 tolerated(0.45) possibly_damaging(0.858) TCGA-05-4382-01 7 105098096 105098096 C A PUS7 3'UTR 0.12 TCGA-05-4382-01 7 106522623 106522623 A G PIK3CG Missense_Mutation p.Y867C 0.12 deleterious(0) probably_damaging(0.998) TCGA-05-4382-01 7 107114721 107114721 A T GPR22 Missense_Mutation p.L72F 0.12 tolerated(0.1) probably_damaging(0.999) TCGA-05-4382-01 7 107224400 107224400 A T BCAP29 Missense_Mutation p.I56F 0.13 tolerated(0.11) probably_damaging(0.999) TCGA-05-4382-01 7 107671272 107671272 G T LAMB4 Missense_Mutation p.H1657Q 0.12 tolerated(0.58) benign(0.001) TCGA-05-4382-01 7 107880434 107880434 C G NRCAM Missense_Mutation p.Q25H 0.04 tolerated(1) benign(0.003) TCGA-05-4382-01 7 110526731 110526731 C A IMMP2L Missense_Mutation p.R109L 0.18 tolerated(0.06) possibly_damaging(0.905) TCGA-05-4382-01 7 110764016 110764016 C G LRRN3 Missense_Mutation p.C396W 0.12 deleterious(0) probably_damaging(1) TCGA-05-4382-01 7 112723879 112723879 G T GPR85 Missense_Mutation p.P300T 0.16 deleterious(0) probably_damaging(1) TCGA-05-4382-01 7 11468710 11468710 C A THSD7A Missense_Mutation p.C1036F 0.29 deleterious(0) probably_damaging(0.998) TCGA-05-4382-01 7 115614261 115614261 T A TFEC Missense_Mutation p.E77V 0.12 deleterious(0.02) possibly_damaging(0.772) TCGA-05-4382-01 7 121650958 121650958 G C PTPRZ1 Missense_Mutation p.D620H 0.12 deleterious_low_confidence(0.04) benign(0.422) TCGA-05-4382-01 7 121651806 121651806 G T PTPRZ1 Silent p.T902T 0.17 TCGA-05-4382-01 7 121942191 121942191 C T FEZF1 Missense_Mutation p.A430T 0.06 tolerated(0.15) benign(0.003) TCGA-05-4382-01 7 122338605 122338605 C G RNF133 Missense_Mutation p.G123A 0.18 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 7 122635593 122635593 C A TAS2R16 Silent p.L32L 0.09 TCGA-05-4382-01 7 123150081 123150081 C A IQUB Missense_Mutation p.V136L 0.12 tolerated(0.18) benign(0.015) TCGA-05-4382-01 7 123302840 123302840 C A LMOD2 Silent p.S400S 0.08 TCGA-05-4382-01 7 123302841 123302841 C A LMOD2 Missense_Mutation p.P401T 0.09 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 7 124467351 124467351 T A POT1 Missense_Mutation p.I535F 0.12 deleterious(0) possibly_damaging(0.851) TCGA-05-4382-01 7 124532324 124532324 T A POT1 Silent p.G40G 0.08 TCGA-05-4382-01 7 128470853 128470853 C A FLNC Silent p.G54G 0.11 TCGA-05-4382-01 7 129855823 129855823 A T SSMEM1 Missense_Mutation p.E83V 0.14 deleterious(0) possibly_damaging(0.607) TCGA-05-4382-01 7 130418206 130418206 G T KLF14 Missense_Mutation p.H219N 0.31 tolerated(0.06) probably_damaging(0.995) TCGA-05-4382-01 7 131849037 131849037 C A PLXNA4 Missense_Mutation p.G1455V 0.11 deleterious(0) probably_damaging(1) TCGA-05-4382-01 7 131866287 131866287 G T PLXNA4 Silent p.P1115P 0.18 TCGA-05-4382-01 7 131866288 131866288 G T PLXNA4 Missense_Mutation p.P1115H 0.19 deleterious(0.01) probably_damaging(0.968) TCGA-05-4382-01 7 131913153 131913153 C A PLXNA4 Silent p.R560R 0.09 TCGA-05-4382-01 7 134928142 134928142 C A STRA8 Missense_Mutation p.S133R 0.12 tolerated(1) benign(0.004) TCGA-05-4382-01 7 137293720 137293720 C A DGKI Missense_Mutation p.G387C 0.10 deleterious(0) probably_damaging(1) TCGA-05-4382-01 7 138536986 138536986 C A KIAA1549 Silent p.P1759P 0.12 TCGA-05-4382-01 7 139416276 139416276 C G HIPK2 Silent p.L186L 0.12 TCGA-05-4382-01 7 140453096 140453096 C A BRAF Missense_Mutation p.L613F 0.08 deleterious(0.03) possibly_damaging(0.739) TCGA-05-4382-01 7 141955042 141955042 T A PRSS58 Missense_Mutation p.H90L 0.08 deleterious(0) probably_damaging(1) TCGA-05-4382-01 7 142045310 142045310 C A TRBV4-2 5'UTR 0.09 TCGA-05-4382-01 7 142231587 142231587 G T TRBV10-1 Nonsense_Mutation p.C110* 0.15 TCGA-05-4382-01 7 142749798 142749798 T A OR6V1 Missense_Mutation p.F121I 0.15 deleterious(0) possibly_damaging(0.781) TCGA-05-4382-01 7 142836648 142836648 G T PIP Silent p.R118R 0.16 TCGA-05-4382-01 7 142983814 142983814 G A TMEM139 Silent p.A181A 0.08 TCGA-05-4382-01 7 143092462 143092462 C A EPHA1 Missense_Mutation p.G678V 0.06 deleterious(0) probably_damaging(0.991) TCGA-05-4382-01 7 143748015 143748015 T A OR2A5 Missense_Mutation p.I174N 0.09 deleterious(0) probably_damaging(0.986) TCGA-05-4382-01 7 143771324 143771324 T A OR2A25 Missense_Mutation p.N4K 0.18 deleterious(0) possibly_damaging(0.804) TCGA-05-4382-01 7 143806779 143806779 C T OR2A2 Missense_Mutation p.T35I 0.13 tolerated(0.91) benign(0.005) TCGA-05-4382-01 7 144097361 144097361 G T NOBOX Missense_Mutation p.P297T 0.13 deleterious(0) probably_damaging(1) TCGA-05-4382-01 7 146741063 146741063 C - CNTNAP2 Frame_Shift_Del p.R157Afs*5 0.15 TCGA-05-4382-01 7 149557754 149557754 G T ZNF862 Missense_Mutation p.R502L 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-05-4382-01 7 150416163 150416163 G T GIMAP1 Nonsense_Mutation p.E10* 0.09 TCGA-05-4382-01 7 150647499 150647499 C A KCNH2 Missense_Mutation p.G719C 0.07 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 7 150779566 150779566 C A TMUB1 Missense_Mutation p.V29F 0.11 deleterious(0.02) possibly_damaging(0.855) TCGA-05-4382-01 7 15425104 15425104 C A AGMO Missense_Mutation p.L347F 0.14 deleterious(0.04) probably_damaging(0.924) TCGA-05-4382-01 7 154379755 154379755 C A DPP6 Intron 0.15 TCGA-05-4382-01 7 154379774 154379774 G T DPP6 Intron 0.11 TCGA-05-4382-01 7 154679411 154679411 G C DPP6 Missense_Mutation p.L757F 0.17 tolerated(0.18) probably_damaging(1) TCGA-05-4382-01 7 155596253 155596253 G A SHH Missense_Mutation p.R244C 0.16 deleterious(0) possibly_damaging(0.894) TCGA-05-4382-01 7 156518501 156518501 T C LMBR1 Missense_Mutation p.T342A 0.05 tolerated(0.68) benign(0.02) TCGA-05-4382-01 7 158482646 158482646 C T NCAPG2 Splice_Site p.X180_splice 0.20 TCGA-05-4382-01 7 158669353 158669353 G A WDR60 Missense_Mutation p.D182N 0.10 tolerated(0.06) benign(0.057) TCGA-05-4382-01 7 1608771 1608771 C A PSMG3 Missense_Mutation p.G69W 0.19 deleterious(0) probably_damaging(1) TCGA-05-4382-01 7 16502317 16502317 T A SOSTDC1 Silent p.V159V 0.24 TCGA-05-4382-01 7 16666731 16666731 C A ANKMY2 Nonsense_Mutation p.G69* 0.08 TCGA-05-4382-01 7 19761705 19761705 C A TMEM196 Missense_Mutation p.R171I 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.506) TCGA-05-4382-01 7 20784905 20784905 C A ABCB5 Silent p.S1091S 0.23 TCGA-05-4382-01 7 20784906 20784906 C A ABCB5 Missense_Mutation p.Q1092K 0.22 tolerated(0.21) possibly_damaging(0.664) TCGA-05-4382-01 7 21603922 21603922 C G DNAH11 Silent p.T367T 0.06 TCGA-05-4382-01 7 21628230 21628230 C A DNAH11 Nonsense_Mutation p.S650* 0.11 TCGA-05-4382-01 7 21726801 21726801 C T DNAH11 Silent p.T1909T 0.18 TCGA-05-4382-01 7 23180421 23180421 C A KLHL7 Missense_Mutation p.P159H 0.13 tolerated(0.09) probably_damaging(0.969) TCGA-05-4382-01 7 23180432 23180432 G A KLHL7 Missense_Mutation p.A163T 0.14 tolerated(0.62) benign(0.138) TCGA-05-4382-01 7 23205441 23205441 G C KLHL7 Missense_Mutation p.C354S 0.19 tolerated(0.32) possibly_damaging(0.893) TCGA-05-4382-01 7 24324910 24324910 C T NPY Silent p.S17S 0.15 TCGA-05-4382-01 7 2472659 2472659 C T CHST12 Missense_Mutation p.R129W 0.15 tolerated(0.06) possibly_damaging(0.776) TCGA-05-4382-01 7 24738646 24738646 C T DFNA5 Silent p.%3D 0.13 TCGA-05-4382-01 7 24870410 24870410 C T OSBPL3 Missense_Mutation p.G621S 0.07 deleterious(0.01) probably_damaging(0.967) TCGA-05-4382-01 7 27134253 27134253 G C HOXA1 Missense_Mutation p.Q272E 0.08 deleterious(0) possibly_damaging(0.764) TCGA-05-4382-01 7 27187267 27187267 C G HOXA6 Silent p.A34A 0.05 TCGA-05-4382-01 7 27827145 27827145 G T TAX1BP1 Nonsense_Mutation p.E321* 0.16 TCGA-05-4382-01 7 30092445 30092445 C T PLEKHA8 Silent p.S253S 0.08 TCGA-05-4382-01 7 30795470 30795470 C T INMT 3'UTR 0.16 TCGA-05-4382-01 7 31014634 31014634 G T GHRHR Silent p.G287G 0.15 TCGA-05-4382-01 7 31146224 31146224 C A ADCYAP1R1 Missense_Mutation p.Q473K 0.15 deleterious(0.04) benign(0.141) TCGA-05-4382-01 7 31592660 31592660 G T CCDC129 Nonsense_Mutation p.G34* 0.11 TCGA-05-4382-01 7 31617853 31617853 A G CCDC129 Silent p.L351L 0.17 TCGA-05-4382-01 7 31792857 31792857 T A PDE1C 3'UTR 0.10 TCGA-05-4382-01 7 33945247 33945247 G A BMPER Missense_Mutation p.G8R 0.26 tolerated_low_confidence(0.82) benign(0) TCGA-05-4382-01 7 34125411 34125411 G T BMPER Missense_Mutation p.M484I 0.12 tolerated(0.14) benign(0.124) TCGA-05-4382-01 7 34125412 34125412 G T BMPER Missense_Mutation p.A485S 0.12 tolerated(0.06) probably_damaging(0.967) TCGA-05-4382-01 7 34182962 34182962 G A BMPER Silent p.Q622Q 0.08 TCGA-05-4382-01 7 38500951 38500951 G T AMPH Missense_Mutation p.Q317K 0.12 deleterious(0.01) possibly_damaging(0.496) TCGA-05-4382-01 7 39610208 39610208 G T YAE1D1 Missense_Mutation p.R78L 0.14 tolerated(0.1) benign(0.003) TCGA-05-4382-01 7 4026893 4026893 G T SDK1 Missense_Mutation p.W690C 0.32 deleterious(0) probably_damaging(1) TCGA-05-4382-01 7 4116809 4116809 G T SDK1 Nonsense_Mutation p.G1064* 0.13 TCGA-05-4382-01 7 4116810 4116810 G T SDK1 Missense_Mutation p.G1064V 0.13 deleterious(0) possibly_damaging(0.869) TCGA-05-4382-01 7 43436462 43436462 G C HECW1 Missense_Mutation p.R202P 0.14 deleterious(0) possibly_damaging(0.897) TCGA-05-4382-01 7 43484004 43484004 G A HECW1 Silent p.E411E 0.10 TCGA-05-4382-01 7 43547716 43547716 T A HECW1 Missense_Mutation p.F1284L 0.10 deleterious(0) possibly_damaging(0.634) TCGA-05-4382-01 7 44150429 44150429 C T AEBP1 Intron 0.10 TCGA-05-4382-01 7 45930211 45930211 C G IGFBP1 Missense_Mutation p.F138L 0.06 deleterious(0.03) benign(0.313) TCGA-05-4382-01 7 45930212 45930212 C A IGFBP1 Missense_Mutation p.H139N 0.06 tolerated(0.11) possibly_damaging(0.756) TCGA-05-4382-01 7 47342932 47342932 C A TNS3 Missense_Mutation p.A1025S 0.21 tolerated(0.42) benign(0.016) TCGA-05-4382-01 7 47942094 47942094 G C PKD1L1 Missense_Mutation p.T649R 0.18 deleterious(0) possibly_damaging(0.453) TCGA-05-4382-01 7 4824630 4824630 G A AP5Z1 Silent p.R294R 0.21 TCGA-05-4382-01 7 4839071 4839071 G T RADIL Missense_Mutation p.L1056M 0.10 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 7 4874578 4874578 G C RADIL Missense_Mutation p.A359G 0.14 tolerated(0.22) benign(0.002) TCGA-05-4382-01 7 50444306 50444306 C A IKZF1 Missense_Mutation p.A79E 0.12 tolerated(0.52) benign(0.3) TCGA-05-4382-01 7 50514191 50514191 G A FIGNL1 Silent p.T265T 0.14 TCGA-05-4382-01 7 5239262 5239262 G T WIPI2 Missense_Mutation p.D62Y 0.22 deleterious(0) benign(0.211) TCGA-05-4382-01 7 53103526 53103526 C G POM121L12 Silent p.P54P 0.15 TCGA-05-4382-01 7 55220275 55220275 G T EGFR Missense_Mutation p.R222L 0.17 deleterious(0) probably_damaging(1) TCGA-05-4382-01 7 55231427 55231427 G C EGFR Missense_Mutation p.E545Q 0.08 tolerated(0.07) benign(0.166) TCGA-05-4382-01 7 591043 591043 C G PRKAR1B Missense_Mutation p.G319A 0.23 tolerated(0.09) benign(0.08) TCGA-05-4382-01 7 6006566 6006566 C A RSPH10B Missense_Mutation p.R61L 0.10 tolerated(0.3) benign(0) TCGA-05-4382-01 7 65157788 65157788 C T INTS4L2 RNA 0.08 TCGA-05-4382-01 7 65552346 65552346 G T ASL Missense_Mutation p.G210C 0.18 deleterious(0.02) possibly_damaging(0.811) TCGA-05-4382-01 7 6836427 6836427 C A RSPH10B2 Intron 0.23 TCGA-05-4382-01 7 72286021 72286021 C G TYW1B Missense_Mutation p.D59H 0.14 tolerated(0.07) benign(0.022) TCGA-05-4382-01 7 72744205 72744205 G C FKBP6 Missense_Mutation p.E106D 0.12 deleterious(0) probably_damaging(1) TCGA-05-4382-01 7 73245364 73245364 T A CLDN4 5'UTR 0.22 TCGA-05-4382-01 7 7413034 7413034 C A COL28A1 Missense_Mutation p.A835S 0.23 tolerated(0.21) benign(0.063) TCGA-05-4382-01 7 75203140 75203140 G A HIP1 Missense_Mutation p.P224L 0.19 deleterious(0) probably_damaging(1) TCGA-05-4382-01 7 75517556 75517556 G A RHBDD2 Silent p.L328L 0.10 TCGA-05-4382-01 7 76058691 76058691 A C ZP3 Intron 0.24 TCGA-05-4382-01 7 76254966 76254966 G T POMZP3 Missense_Mutation p.P34T 0.07 deleterious_low_confidence(0.03) unknown(0) TCGA-05-4382-01 7 77402527 77402527 C G RSBN1L Silent p.L563L 0.05 TCGA-05-4382-01 7 77756539 77756539 G T MAGI2 Missense_Mutation p.P1133H 0.21 deleterious(0) possibly_damaging(0.905) TCGA-05-4382-01 7 81335050 81335050 A C HGF Missense_Mutation p.F593V 0.07 tolerated(0.5) benign(0.137) TCGA-05-4382-01 7 81355333 81355333 C A HGF Missense_Mutation p.K347N 0.15 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 7 82474642 82474642 C A PCLO Missense_Mutation p.S4664I 0.13 unknown(0) TCGA-05-4382-01 7 82476482 82476482 C A PCLO Missense_Mutation p.S4579I 0.10 unknown(0) TCGA-05-4382-01 7 82579983 82579983 C A PCLO Silent p.L3307L 0.22 TCGA-05-4382-01 7 83689790 83689790 G T SEMA3A Missense_Mutation p.L180I 0.13 tolerated(0.23) benign(0.037) TCGA-05-4382-01 7 88424345 88424345 C G C7orf62 5'UTR 0.12 TCGA-05-4382-01 7 92027978 92027978 C T ANKIB1 Silent p.I995I 0.07 TCGA-05-4382-01 7 92083958 92083958 C G GATAD1 Missense_Mutation p.S193C 0.11 deleterious(0.01) benign(0.321) TCGA-05-4382-01 7 93067561 93067561 G T CALCR Missense_Mutation p.T309N 0.09 deleterious(0.04) possibly_damaging(0.897) TCGA-05-4382-01 7 94058582 94058582 C A COL1A2 Missense_Mutation p.S1265Y 0.13 unknown(0) TCGA-05-4382-01 7 94185070 94185070 G - CASD1 Frame_Shift_Del 0.11 TCGA-05-4382-01 7 96637038 96637038 C G DLX6 Silent p.S175S 0.22 TCGA-05-4382-01 7 97488585 97488585 G C ASNS Missense_Mutation p.H205D 0.06 deleterious(0.01) benign(0.33) TCGA-05-4382-01 7 98589832 98589832 C A TRRAP Silent p.R3281R 0.10 TCGA-05-4382-01 7 99764641 99764641 C T GAL3ST4 Missense_Mutation p.M26I 0.17 deleterious(0.03) benign(0.389) TCGA-05-4382-01 8 101075759 101075759 T C RGS22 Missense_Mutation p.K413E 0.08 deleterious(0.02) benign(0.342) TCGA-05-4382-01 8 103301722 103301722 C A UBR5 Missense_Mutation p.D1558Y 0.55 deleterious(0.01) probably_damaging(0.996) TCGA-05-4382-01 8 103317410 103317410 T C UBR5 Silent p.T910T 0.52 TCGA-05-4382-01 8 103327008 103327008 C A UBR5 Missense_Mutation p.A620S 0.59 tolerated(0.3) benign(0.015) TCGA-05-4382-01 8 104390389 104390389 T A CTHRC1 Silent p.P169P 0.07 TCGA-05-4382-01 8 104513164 104513164 C A RIMS2 Missense_Mutation p.A17D 0.06 deleterious_low_confidence(0) benign(0.156) TCGA-05-4382-01 8 104513165 104513165 C A RIMS2 Silent p.A17A 0.06 TCGA-05-4382-01 8 10465408 10465408 G T RP1L1 Missense_Mutation p.A2067D 0.32 unknown(0) TCGA-05-4382-01 8 10465814 10465814 C A RP1L1 Nonsense_Mutation p.E1932* 0.33 TCGA-05-4382-01 8 105441800 105441800 G T DPYS Missense_Mutation p.P308H 0.11 deleterious(0) probably_damaging(1) TCGA-05-4382-01 8 105503353 105503353 C A LRP12 Missense_Mutation p.D710Y 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.779) TCGA-05-4382-01 8 105510277 105510277 C A LRP12 Missense_Mutation p.C168F 0.09 tolerated(0.09) benign(0.387) TCGA-05-4382-01 8 110394763 110394763 G A PKHD1L1 Missense_Mutation p.C127Y 0.12 deleterious(0) probably_damaging(0.995) TCGA-05-4382-01 8 11058274 11058274 C A XKR6 Missense_Mutation p.G192V 0.24 deleterious(0.01) probably_damaging(0.99) TCGA-05-4382-01 8 113304930 113304930 C A CSMD3 Missense_Mutation p.C2875F 0.09 deleterious(0.01) possibly_damaging(0.631) TCGA-05-4382-01 8 113308147 113308147 A T CSMD3 Nonsense_Mutation p.C2843* 0.14 TCGA-05-4382-01 8 113317037 113317037 G T CSMD3 Missense_Mutation p.P2727T 0.09 tolerated(0.07) probably_damaging(0.973) TCGA-05-4382-01 8 113326690 113326690 T C CSMD3 Missense_Mutation p.E2506G 0.09 deleterious(0) probably_damaging(0.992) TCGA-05-4382-01 8 113933969 113933969 G T CSMD3 Missense_Mutation p.T507N 0.08 tolerated(0.24) possibly_damaging(0.493) TCGA-05-4382-01 8 121262964 121262964 C G COL14A1 Missense_Mutation p.A904G 0.13 tolerated(0.4) benign(0.011) TCGA-05-4382-01 8 121344966 121344966 G A COL14A1 Missense_Mutation p.G1593R 0.10 deleterious(0) probably_damaging(1) TCGA-05-4382-01 8 124232296 124232296 C T C8orf76 3'UTR 0.14 TCGA-05-4382-01 8 124449469 124449469 G T WDYHV1 Missense_Mutation p.A135S 0.18 deleterious(0.05) probably_damaging(0.961) TCGA-05-4382-01 8 125113558 125113558 C A FER1L6 Missense_Mutation p.L1702M 0.11 deleterious(0.03) probably_damaging(1) TCGA-05-4382-01 8 125555397 125555397 G A NDUFB9 Missense_Mutation p.M57I 0.12 tolerated(0.14) benign(0.058) TCGA-05-4382-01 8 131949374 131949374 G T ADCY8 Missense_Mutation p.Q476K 0.10 tolerated(0.74) benign(0.06) TCGA-05-4382-01 8 133644985 133644985 C A LRRC6 Splice_Site p.X218_splice 0.13 TCGA-05-4382-01 8 133826881 133826881 G T PHF20L1 Splice_Site p.X311_splice 0.13 TCGA-05-4382-01 8 134232923 134232923 C T WISP1 Missense_Mutation p.A150V 0.09 tolerated(0.06) benign(0.269) TCGA-05-4382-01 8 139163907 139163907 C A FAM135B Missense_Mutation p.L937F 0.10 tolerated_low_confidence(1) benign(0.001) TCGA-05-4382-01 8 139768047 139768047 G A COL22A1 Missense_Mutation p.P643L 0.10 unknown(0) TCGA-05-4382-01 8 144947335 144947335 C A EPPK1 Silent p.T29T 0.14 TCGA-05-4382-01 8 145012823 145012823 C A PLEC Missense_Mutation p.K187N 0.08 possibly_damaging(0.512) TCGA-05-4382-01 8 145095278 145095278 C A SPATC1 Missense_Mutation p.P227Q 0.08 deleterious_low_confidence(0.04) benign(0.023) TCGA-05-4382-01 8 145218704 145218704 G T MROH1 5'UTR 0.08 TCGA-05-4382-01 8 145218705 145218705 G T MROH1 5'UTR 0.10 TCGA-05-4382-01 8 145649195 145649195 T A VPS28 3'UTR 0.13 TCGA-05-4382-01 8 15967521 15967521 G T MSR1 3'UTR 0.18 TCGA-05-4382-01 8 18257576 18257576 G C NAT2 Missense_Mutation p.L21F 0.35 deleterious(0.02) possibly_damaging(0.494) TCGA-05-4382-01 8 21986489 21986489 G T HR Missense_Mutation p.F65L 0.14 tolerated_low_confidence(0.18) benign(0.011) TCGA-05-4382-01 8 22210598 22210598 C T PIWIL2 Nonsense_Mutation p.Q844* 0.04 TCGA-05-4382-01 8 26721659 26721659 G T ADRA1A Silent p.I276I 0.26 TCGA-05-4382-01 8 36793116 36793116 G T KCNU1 Missense_Mutation p.C1043F 0.20 tolerated(0.48) benign(0.006) TCGA-05-4382-01 8 39550197 39550197 G A ADAM18 Missense_Mutation p.G634R 0.09 deleterious(0) probably_damaging(1) TCGA-05-4382-01 8 41456634 41456634 G T AGPAT6 5'UTR 0.08 TCGA-05-4382-01 8 41543692 41543692 G T ANK1 Silent p.I1497I 0.16 TCGA-05-4382-01 8 42038086 42038086 G T PLAT Missense_Mutation p.P336H 0.10 tolerated(0.14) possibly_damaging(0.622) TCGA-05-4382-01 8 42038087 42038087 G T PLAT Missense_Mutation p.P336T 0.10 tolerated(0.18) benign(0.015) TCGA-05-4382-01 8 43037331 43037331 G T HGSNAT Missense_Mutation p.L352F 0.25 deleterious(0.05) benign(0.146) TCGA-05-4382-01 8 48711843 48711843 C A PRKDC Missense_Mutation p.V3408L 0.07 benign(0.012) TCGA-05-4382-01 8 52321213 52321213 G T PXDNL Missense_Mutation p.H991N 0.28 deleterious(0) probably_damaging(0.994) TCGA-05-4382-01 8 52387659 52387659 C T PXDNL Missense_Mutation p.M189I 0.12 tolerated(0.28) benign(0.001) TCGA-05-4382-01 8 53030987 53030987 C T ST18 Missense_Mutation p.E924K 0.15 deleterious(0) possibly_damaging(0.887) TCGA-05-4382-01 8 54163343 54163343 G T OPRK1 Silent p.I85I 0.15 TCGA-05-4382-01 8 56723472 56723472 G T TGS1 Missense_Mutation p.A726S 0.12 tolerated(0.54) benign(0.008) TCGA-05-4382-01 8 56866543 56866543 G A LYN Missense_Mutation p.G264S 0.12 deleterious(0.01) benign(0.083) TCGA-05-4382-01 8 59404216 59404216 G T CYP7A1 Missense_Mutation p.P445T 0.08 deleterious(0) probably_damaging(1) TCGA-05-4382-01 8 65537045 65537045 C A CYP7B1 Silent p.V58V 0.12 TCGA-05-4382-01 8 67592149 67592149 G T C8orf44 Missense_Mutation p.G147V 0.19 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-05-4382-01 8 70585465 70585465 T C SLCO5A1 Missense_Mutation p.Y729C 0.13 deleterious(0) probably_damaging(1) TCGA-05-4382-01 8 72184101 72184101 G T EYA1 Silent p.P286P 0.10 TCGA-05-4382-01 8 72958754 72958754 G T TRPA1 Silent p.A685A 0.11 TCGA-05-4382-01 8 77619978 77619978 C G ZFHX4 Missense_Mutation p.L930V 0.15 possibly_damaging(0.567) TCGA-05-4382-01 8 77763587 77763587 C G ZFHX4 Missense_Mutation p.S1477C 0.11 benign(0.005) TCGA-05-4382-01 8 77764096 77764096 C A ZFHX4 Missense_Mutation p.Q1647K 0.13 benign(0.092) TCGA-05-4382-01 8 77768512 77768512 C G ZFHX4 Missense_Mutation p.P3119A 0.15 possibly_damaging(0.492) TCGA-05-4382-01 8 85441701 85441701 G T RALYL Missense_Mutation p.V62F 0.13 deleterious(0) possibly_damaging(0.696) TCGA-05-4382-01 8 85799896 85799896 C A RALYL Nonsense_Mutation p.S261* 0.09 TCGA-05-4382-01 8 87076623 87076623 G T PSKH2 Silent p.T141T 0.12 TCGA-05-4382-01 8 87638259 87638259 G T CNGB3 Silent p.L510L 0.08 TCGA-05-4382-01 8 89180010 89180010 A T MMP16 Missense_Mutation p.F199L 0.17 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 8 91094979 91094979 G C CALB1 5'UTR 0.12 TCGA-05-4382-01 8 92008965 92008965 C A TMEM55A Missense_Mutation p.V183L 0.18 deleterious(0.01) probably_damaging(0.935) TCGA-05-4382-01 8 95508630 95508630 C A KIAA1429 Nonsense_Mutation p.E1437* 0.17 TCGA-05-4382-01 8 97156800 97156800 G T GDF6 Silent p.G453G 0.21 TCGA-05-4382-01 8 99019735 99019735 T A MATN2 Missense_Mutation p.H493Q 0.44 deleterious(0) possibly_damaging(0.797) TCGA-05-4382-01 9 100090327 100090327 A G CCDC180 Missense_Mutation p.T607A 0.10 tolerated(0.11) benign(0.357) TCGA-05-4382-01 9 101552507 101552507 C T ANKS6 Silent p.K247K 0.13 TCGA-05-4382-01 9 101832185 101832185 C T COL15A1 3'UTR 0.13 TCGA-05-4382-01 9 101980872 101980872 G A ALG2 Missense_Mutation p.L199F 0.07 deleterious(0) probably_damaging(0.994) TCGA-05-4382-01 9 103092305 103092305 T A TEX10 Missense_Mutation p.E466V 0.15 deleterious(0.01) benign(0.302) TCGA-05-4382-01 9 104238432 104238432 C A TMEM246 Nonsense_Mutation p.E315* 0.09 TCGA-05-4382-01 9 104357038 104357038 G T PPP3R2 Silent p.R59R 0.14 TCGA-05-4382-01 9 106889740 106889740 G T SMC2 Missense_Mutation p.E923D 0.10 tolerated(0.6) benign(0.02) TCGA-05-4382-01 9 107288831 107288831 G A OR13C4 Silent p.F220F 0.13 TCGA-05-4382-01 9 107360884 107360884 C A OR13C5 Missense_Mutation p.D271Y 0.13 deleterious(0.03) possibly_damaging(0.819) TCGA-05-4382-01 9 107367473 107367473 C T OR13C2 Missense_Mutation p.A146T 0.12 tolerated(0.15) benign(0.009) TCGA-05-4382-01 9 107591340 107591340 C G ABCA1 Missense_Mutation p.G658R 0.18 deleterious(0) possibly_damaging(0.451) TCGA-05-4382-01 9 113148238 113148238 G T SVEP1 Missense_Mutation p.H3393N 0.11 benign(0) TCGA-05-4382-01 9 113234499 113234499 G T SVEP1 Silent p.R902R 0.15 TCGA-05-4382-01 9 113562997 113562997 C T MUSK Missense_Mutation p.T780I 0.09 deleterious(0) probably_damaging(1) TCGA-05-4382-01 9 116191477 116191477 C A C9orf43 Silent p.P399P 0.13 TCGA-05-4382-01 9 116299126 116299126 G T RGS3 Missense_Mutation p.K655N 0.11 deleterious(0.01) probably_damaging(0.962) TCGA-05-4382-01 9 116931016 116931016 C G COL27A1 Missense_Mutation p.S394C 0.08 unknown(0) TCGA-05-4382-01 9 117138909 117138909 C A AKNA Missense_Mutation p.R393M 0.14 deleterious(0.02) possibly_damaging(0.885) TCGA-05-4382-01 9 117783521 117783521 C - TNC Frame_Shift_Del p.G2174Afs*11 0.14 TCGA-05-4382-01 9 119460463 119460463 G T TRIM32 Missense_Mutation p.D148Y 0.13 deleterious(0.03) benign(0.115) TCGA-05-4382-01 9 119770459 119770459 G T ASTN2 Nonsense_Mutation p.Y450* 0.14 TCGA-05-4382-01 9 120474737 120474737 G T TLR4 Nonsense_Mutation p.G111* 0.12 TCGA-05-4382-01 9 120476443 120476443 C A TLR4 Silent p.I679I 0.11 TCGA-05-4382-01 9 123526797 123526797 C A FBXW2 3'UTR 0.08 TCGA-05-4382-01 9 125273139 125273139 G T OR1J2 Missense_Mutation p.R20L 0.10 tolerated_low_confidence(0.17) benign(0.006) TCGA-05-4382-01 9 125377564 125377564 C T OR1Q1 Missense_Mutation p.A183V 0.11 deleterious(0.03) benign(0.237) TCGA-05-4382-01 9 125617621 125617621 C A RC3H2 Missense_Mutation p.R886M 0.09 deleterious(0) probably_damaging(0.982) TCGA-05-4382-01 9 126146038 126146038 G C DENND1A Missense_Mutation p.L578V 0.12 deleterious(0) benign(0.41) TCGA-05-4382-01 9 127660853 127660853 T A GOLGA1 Missense_Mutation p.H461L 0.15 tolerated(0.53) possibly_damaging(0.843) TCGA-05-4382-01 9 128061359 128061359 C A GAPVD1 Silent p.I53I 0.10 TCGA-05-4382-01 9 130478320 130478320 G A PTRH1 5'UTR 0.08 TCGA-05-4382-01 9 130478322 130478322 G T PTRH1 5'UTR 0.09 TCGA-05-4382-01 9 130648810 130648810 C T ST6GALNAC6 3'UTR 0.11 TCGA-05-4382-01 9 130941553 130941553 G A CIZ1 Silent p.F311F 0.10 TCGA-05-4382-01 9 131744890 131744890 G T NUP188 Missense_Mutation p.A527S 0.13 tolerated(0.53) benign(0.111) TCGA-05-4382-01 9 132400147 132400147 G C ASB6 Silent p.V396V 0.10 TCGA-05-4382-01 9 133342122 133342122 C G ASS1 Missense_Mutation p.P144R 0.12 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 9 133928036 133928036 G T LAMC3 Missense_Mutation p.A597S 0.12 tolerated(0.76) benign(0.014) TCGA-05-4382-01 9 134353267 134353267 G T PRRC2B Missense_Mutation p.A1515S 0.16 tolerated(0.79) benign(0.003) TCGA-05-4382-01 9 134394319 134394319 C T POMT1 Silent p.N509N 0.07 TCGA-05-4382-01 9 134889752 134889752 G A MED27 Nonsense_Mutation p.Q151* 0.10 TCGA-05-4382-01 9 135102294 135102294 G C NTNG2 Missense_Mutation p.E306Q 0.07 tolerated(0.12) benign(0.161) TCGA-05-4382-01 9 135763714 135763714 G T C9orf9 Nonsense_Mutation p.E129* 0.07 TCGA-05-4382-01 9 136260790 136260790 C A C9orf96 Missense_Mutation p.L256M 0.14 deleterious(0) probably_damaging(0.998) TCGA-05-4382-01 9 136501727 136501727 G T DBH Silent p.V78V 0.11 TCGA-05-4382-01 9 136523588 136523588 C A DBH 3'UTR 0.10 TCGA-05-4382-01 9 137619238 137619238 G T COL5A1 Nonsense_Mutation p.E261* 0.08 TCGA-05-4382-01 9 137664635 137664635 G A COL5A1 Splice_Site p.X763_splice 0.16 TCGA-05-4382-01 9 137708881 137708881 G T COL5A1 Missense_Mutation p.G1378C 0.11 unknown(0) TCGA-05-4382-01 9 137708882 137708882 G T COL5A1 Missense_Mutation p.G1378V 0.11 unknown(0) TCGA-05-4382-01 9 137801875 137801875 G T FCN1 Silent p.G250G 0.11 TCGA-05-4382-01 9 137804876 137804876 C A FCN1 Nonsense_Mutation p.G152* 0.11 TCGA-05-4382-01 9 137809691 137809691 G T FCN1 Silent p.A9A 0.08 TCGA-05-4382-01 9 137967559 137967559 G T OLFM1 Missense_Mutation p.G3C 0.11 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-05-4382-01 9 138439723 138439723 G T OBP2A Missense_Mutation p.G95V 0.09 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 9 138439794 138439794 C A OBP2A Missense_Mutation p.R119S 0.10 tolerated(0.25) benign(0.087) TCGA-05-4382-01 9 138669205 138669205 G A KCNT1 Missense_Mutation p.E791K 0.10 tolerated(0.24) benign(0.065) TCGA-05-4382-01 9 139694873 139694873 G C CCDC183 Missense_Mutation p.K157N 0.11 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 9 139873716 139873716 C A PTGDS Missense_Mutation p.A99E 0.09 tolerated(0.16) possibly_damaging(0.637) TCGA-05-4382-01 9 139906938 139906938 T A ABCA2 Missense_Mutation p.Q1729L 0.09 deleterious(0) possibly_damaging(0.848) TCGA-05-4382-01 9 139908809 139908809 C A ABCA2 Missense_Mutation p.A1351S 0.13 tolerated(0.64) benign(0.008) TCGA-05-4382-01 9 140811693 140811693 A T CACNA1B Missense_Mutation p.D259V 0.11 tolerated(0.16) benign(0.298) TCGA-05-4382-01 9 14851592 14851592 C A FREM1 Missense_Mutation p.W281L 0.28 deleterious(0) benign(0) TCGA-05-4382-01 9 19058167 19058167 C G HAUS6 Missense_Mutation p.L866F 0.35 tolerated(0.08) possibly_damaging(0.861) TCGA-05-4382-01 9 19516285 19516285 T A SLC24A2 Missense_Mutation p.I618F 0.17 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 9 21367820 21367820 G T IFNA13 Missense_Mutation p.Q64K 0.08 tolerated(0.14) benign(0.089) TCGA-05-4382-01 9 21971199 21971199 C G CDKN2A Missense_Mutation p.M53I 0.10 deleterious(0) probably_damaging(0.943) TCGA-05-4382-01 9 27185502 27185502 C A TEK Missense_Mutation p.T401K 0.28 tolerated(0.54) benign(0.007) TCGA-05-4382-01 9 35092199 35092199 G C PIGO Missense_Mutation p.S562C 0.06 deleterious(0) probably_damaging(0.999) TCGA-05-4382-01 9 35738836 35738836 C T GBA2 Silent p.L620L 0.10 TCGA-05-4382-01 9 40772948 40772948 C A ZNF658 Missense_Mutation p.G776V 0.34 deleterious(0) probably_damaging(1) TCGA-05-4382-01 9 43627457 43627457 C A SPATA31A6 Missense_Mutation p.K410N 0.48 deleterious(0.05) possibly_damaging(0.74) TCGA-05-4382-01 9 74865578 74865578 G T GDA Intron 0.19 TCGA-05-4382-01 9 8376609 8376609 T A PTPRD Nonsense_Mutation p.K1502* 0.46 TCGA-05-4382-01 9 84562689 84562689 G T RP11-383M4.6 Intron 0.19 TCGA-05-4382-01 9 8460523 8460523 G T PTPRD Missense_Mutation p.L1255M 0.34 tolerated(0.25) possibly_damaging(0.824) TCGA-05-4382-01 9 847035 847035 G T DMRT1 Nonsense_Mutation p.E144* 0.11 TCGA-05-4382-01 9 8524977 8524977 G T PTPRD Silent p.A209A 0.07 TCGA-05-4382-01 9 85622420 85622420 C A RASEF Missense_Mutation p.R320S 0.06 deleterious(0) probably_damaging(0.997) TCGA-05-4382-01 9 91943595 91943595 G T SECISBP2 Missense_Mutation p.D199Y 0.15 deleterious(0) probably_damaging(0.928) TCGA-05-4382-01 9 92006263 92006263 C A SEMA4D Missense_Mutation p.R230S 0.13 deleterious(0) possibly_damaging(0.455) TCGA-05-4382-01 9 92006264 92006264 C A SEMA4D Missense_Mutation p.R230M 0.13 deleterious(0) possibly_damaging(0.886) TCGA-05-4382-01 9 94487030 94487030 C A ROR2 Silent p.T582T 0.09 TCGA-05-4382-01 9 95004448 95004448 T A IARS Missense_Mutation p.Q1055H 0.15 deleterious(0.03) benign(0.009) TCGA-05-4382-01 9 95599567 95599567 C A ANKRD19P RNA 0.12 TCGA-05-4382-01 9 96055354 96055354 C G WNK2 Missense_Mutation p.S1906R 0.13 unknown(0) TCGA-05-4382-01 9 98220410 98220410 C A PTCH1 Missense_Mutation p.W1018L 0.08 deleterious(0) probably_damaging(1) TCGA-05-4382-01 9 98775122 98775122 G T ERCC6L2 Silent p.L402L 0.12 TCGA-05-4382-01 X 100417903 100417903 C T CENPI Missense_Mutation p.H740Y 0.16 deleterious(0.02) benign(0.133) TCGA-05-4382-01 X 100503543 100503543 G C DRP2 Missense_Mutation p.G499R 0.22 deleterious(0) probably_damaging(1) TCGA-05-4382-01 X 100515651 100515651 G T DRP2 3'UTR 0.23 TCGA-05-4382-01 X 100515652 100515652 G T DRP2 3'UTR 0.23 TCGA-05-4382-01 X 100613310 100613310 G T BTK Missense_Mutation p.H364N 0.12 deleterious(0) probably_damaging(0.991) TCGA-05-4382-01 X 103267882 103267882 G T H2BFWT Silent p.I117I 0.08 TCGA-05-4382-01 X 107977664 107977664 G T IRS4 Silent p.P637P 0.17 TCGA-05-4382-01 X 109507780 109507780 C A AMMECR1 Missense_Mutation p.G174V 0.11 deleterious(0) probably_damaging(1) TCGA-05-4382-01 X 118151596 118151596 G T LONRF3 Missense_Mutation p.K741N 0.18 deleterious(0) probably_damaging(1) TCGA-05-4382-01 X 124028144 124028144 C T TENM1 Splice_Site p.X179_splice 0.09 TCGA-05-4382-01 X 125685886 125685886 C A DCAF12L1 Nonsense_Mutation p.E236* 0.17 TCGA-05-4382-01 X 127185556 127185556 G T ACTRT1 Silent p.A210A 0.17 TCGA-05-4382-01 X 12939284 12939284 G A TLR8 Missense_Mutation p.D709N 0.08 tolerated(1) benign(0.002) TCGA-05-4382-01 X 130218249 130218249 C A ARHGAP36 Missense_Mutation p.L206M 0.38 deleterious(0) probably_damaging(0.912) TCGA-05-4382-01 X 134703357 134703357 G T DDX26B Splice_Site p.X429_splice 0.83 TCGA-05-4382-01 X 135112295 135112295 G T SLC9A6 Missense_Mutation p.G541C 0.65 deleterious(0.01) probably_damaging(0.952) TCGA-05-4382-01 X 135112301 135112301 G C SLC9A6 Missense_Mutation p.D543H 0.06 deleterious(0.01) probably_damaging(0.952) TCGA-05-4382-01 X 135427823 135427823 A T GPR112 Missense_Mutation p.E653V 0.13 deleterious(0) benign(0.084) TCGA-05-4382-01 X 135455194 135455194 C G GPR112 Missense_Mutation p.H2583D 0.40 tolerated(0.05) benign(0.05) TCGA-05-4382-01 X 137715148 137715148 C A FGF13 Splice_Site p.X211_splice 0.34 TCGA-05-4382-01 X 13785314 13785314 C T OFD1 Nonsense_Mutation p.R890* 0.14 TCGA-05-4382-01 X 140995493 140995493 A T MAGEC1 Missense_Mutation p.E768V 0.12 deleterious_low_confidence(0) benign(0.403) TCGA-05-4382-01 X 142717696 142717696 C A SLITRK4 Missense_Mutation p.S410I 0.19 deleterious(0) probably_damaging(0.991) TCGA-05-4382-01 X 142718102 142718102 G T SLITRK4 Missense_Mutation p.L275M 0.21 tolerated(0.24) benign(0.015) TCGA-05-4382-01 X 144904794 144904794 G T SLITRK2 Missense_Mutation p.R284M 0.06 tolerated(0.24) benign(0.264) TCGA-05-4382-01 X 1471274 1471274 G C IL3RA Missense_Mutation p.G164A 0.05 tolerated(0.51) possibly_damaging(0.901) TCGA-05-4382-01 X 148627288 148627288 A G CXorf40A Missense_Mutation p.T38A 0.09 deleterious(0.01) possibly_damaging(0.768) TCGA-05-4382-01 X 152083041 152083041 T G ZNF185 Missense_Mutation p.I3S 0.33 deleterious(0) possibly_damaging(0.493) TCGA-05-4382-01 X 153062964 153062964 G T SSR4 Missense_Mutation p.G80C 0.10 tolerated(0.07) probably_damaging(0.935) TCGA-05-4382-01 X 153130872 153130872 G T L1CAM Silent p.T877T 0.16 TCGA-05-4382-01 X 153297886 153297886 G C MECP2 Missense_Mutation p.A62G 0.10 tolerated(0.16) benign(0.186) TCGA-05-4382-01 X 15376214 15376214 G T FIGF Missense_Mutation p.P135T 0.26 deleterious(0) probably_damaging(0.993) TCGA-05-4382-01 X 153880722 153880722 C A CTAG2 Silent p.V151V 0.18 TCGA-05-4382-01 X 155004396 155004396 T A SPRY3 Missense_Mutation p.V288E 0.08 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-05-4382-01 X 155231119 155231119 G T IL9R Intron 0.08 TCGA-05-4382-01 X 17744755 17744755 G T NHS Missense_Mutation p.R822S 0.30 deleterious(0) benign(0.373) TCGA-05-4382-01 X 17745107 17745107 A G NHS Missense_Mutation p.R940G 0.11 tolerated(0.14) probably_damaging(0.996) TCGA-05-4382-01 X 19389161 19389161 G A MAP3K15 Missense_Mutation p.H1106Y 0.32 tolerated(0.05) benign(0.018) TCGA-05-4382-01 X 20062499 20062499 C A MAP7D2 Nonsense_Mutation p.G288* 0.39 TCGA-05-4382-01 X 22237202 22237202 C A PHEX Missense_Mutation p.H584N 0.26 deleterious(0) probably_damaging(0.995) TCGA-05-4382-01 X 26213127 26213127 A T MAGEB6 Silent p.P388P 0.38 TCGA-05-4382-01 X 2871199 2871199 C A ARSE Missense_Mutation p.A139S 0.12 tolerated(1) benign(0.11) TCGA-05-4382-01 X 3228223 3228223 G T MXRA5 Missense_Mutation p.P2674H 0.11 deleterious(0) probably_damaging(1) TCGA-05-4382-01 X 3238801 3238801 C A MXRA5 Missense_Mutation p.W1642L 0.12 tolerated(0.75) benign(0) TCGA-05-4382-01 X 32398633 32398633 C A DMD Missense_Mutation p.W1613C 0.20 possibly_damaging(0.878) TCGA-05-4382-01 X 36122805 36122805 A T CHDC2 Nonsense_Mutation p.K348* 0.33 TCGA-05-4382-01 X 37027144 37027144 C A FAM47C Missense_Mutation p.H221N 0.28 tolerated(0.09) possibly_damaging(0.546) TCGA-05-4382-01 X 37028190 37028190 T C FAM47C Silent p.S569S 0.18 TCGA-05-4382-01 X 41586498 41586498 C T GPR82 Silent p.I73I 0.16 TCGA-05-4382-01 X 44703497 44703497 A G DUSP21 Missense_Mutation p.K40R 0.42 tolerated(0.72) benign(0.016) TCGA-05-4382-01 X 45013396 45013396 G T CXorf36 Silent p.S240S 0.31 TCGA-05-4382-01 X 45013397 45013397 G T CXorf36 Missense_Mutation p.S240Y 0.31 deleterious(0) probably_damaging(0.973) TCGA-05-4382-01 X 45051245 45051245 C T CXorf36 Silent p.L83L 0.37 TCGA-05-4382-01 X 47103906 47103906 G T USP11 Silent p.V643V 0.16 TCGA-05-4382-01 X 48046184 48046184 G T SSX5 3'UTR 0.29 TCGA-05-4382-01 X 53111967 53111967 G T TSPYL2 Missense_Mutation p.G96V 0.26 deleterious(0.01) possibly_damaging(0.649) TCGA-05-4382-01 X 53574724 53574724 C A HUWE1 Missense_Mutation p.A3516S 0.40 unknown(0) TCGA-05-4382-01 X 53644083 53644083 C A HUWE1 Missense_Mutation p.G602V 0.30 probably_damaging(0.982) TCGA-05-4382-01 X 55479419 55479419 G C MAGEH1 Missense_Mutation p.E204D 0.27 deleterious_low_confidence(0.03) benign(0.008) TCGA-05-4382-01 X 63445161 63445161 C A ASB12 Missense_Mutation p.V124L 0.33 tolerated(0.3) benign(0.146) TCGA-05-4382-01 X 6995376 6995376 C A HDHD1 Missense_Mutation p.S155I 0.11 tolerated(0.06) possibly_damaging(0.738) TCGA-05-4382-01 X 70522270 70522271 - T ITGB1BP2 Frame_Shift_Ins p.M61Ifs*7 0.21 TCGA-05-4382-01 X 71359879 71359879 C A NHSL2 Missense_Mutation p.D827E 0.21 tolerated(0.13) probably_damaging(0.966) TCGA-05-4382-01 X 73066046 73066046 C A XIST RNA 0.23 TCGA-05-4382-01 X 79286474 79286474 G T TBX22 Missense_Mutation p.R476I 0.28 deleterious(0.02) possibly_damaging(0.577) TCGA-05-4382-01 X 79698553 79698553 G T FAM46D Missense_Mutation p.S172I 0.32 deleterious(0) possibly_damaging(0.864) TCGA-05-4382-01 X 84526809 84526809 G T ZNF711 Missense_Mutation p.R754M 0.12 deleterious(0) probably_damaging(0.984) TCGA-05-4382-01 X 91134268 91134268 G T PCDH11X Missense_Mutation p.R1010I 0.24 deleterious(0) possibly_damaging(0.707) TCGA-05-4382-01 X 92927735 92927735 C A NAP1L3 Missense_Mutation p.G190V 0.33 tolerated(0.06) probably_damaging(0.988) TCGA-05-4382-01 X 99921831 99921831 T C SRPX2 Missense_Mutation p.C288R 0.29 deleterious(0) probably_damaging(0.999) TCGA-05-4384-01 10 105166430 105166430 A G PDCD11 Silent p.G251G 0.26 TCGA-05-4384-01 10 32307277 32307277 G C KIF5B Silent p.L802L 0.10 TCGA-05-4384-01 10 34400444 34400444 G A PARD3 Nonsense_Mutation p.Q1242* 0.26 TCGA-05-4384-01 10 92680840 92680840 G C ANKRD1 5'UTR 0.25 TCGA-05-4384-01 10 93621874 93621874 C G TNKS2 Missense_Mutation p.L1134V 0.11 deleterious(0) probably_damaging(0.941) TCGA-05-4384-01 11 102743653 102743653 G T MMP12 RNA 0.24 TCGA-05-4384-01 11 103780477 103780477 T C PDGFD Missense_Mutation p.Q353R 0.17 tolerated(0.34) probably_damaging(0.999) TCGA-05-4384-01 11 1216417 1216417 C T MUC5AC RNA 0.44 TCGA-05-4384-01 11 55735567 55735567 G C OR10AG1 Missense_Mutation p.L125V 0.16 tolerated(0.16) benign(0.057) TCGA-05-4384-01 11 56057967 56057967 G T OR8H1 Missense_Mutation p.T191K 0.30 deleterious(0) possibly_damaging(0.905) TCGA-05-4384-01 11 5841596 5841596 C A OR52N2 Missense_Mutation p.P11T 0.24 deleterious(0.01) benign(0.049) TCGA-05-4384-01 11 59376080 59376080 T A OSBP Silent p.T233T 0.21 TCGA-05-4384-01 11 60531432 60531432 G T MS4A15 Splice_Site p.X75_splice 0.33 TCGA-05-4384-01 11 614252 614252 A G IRF7 Missense_Mutation p.W214R 0.33 tolerated(0.55) benign(0.022) TCGA-05-4384-01 11 72006575 72006575 C A CLPB Missense_Mutation p.A513S 0.28 tolerated(0.12) possibly_damaging(0.678) TCGA-05-4384-01 11 8933196 8933196 C G AKIP1 Missense_Mutation p.P67R 0.33 deleterious(0.02) possibly_damaging(0.846) TCGA-05-4384-01 11 92531077 92531077 C A FAT3 Missense_Mutation p.T1633K 0.21 benign(0.255) TCGA-05-4384-01 11 94731100 94731100 G C KDM4D Silent p.T188T 0.22 TCGA-05-4384-01 12 117726019 117726019 C A NOS1 Silent p.T329T 0.21 TCGA-05-4384-01 12 21069235 21069235 G T SLCO1B3 3'UTR 0.24 TCGA-05-4384-01 12 44148626 44148626 G A PUS7L Silent p.A141A 0.22 TCGA-05-4384-01 12 4479687 4479687 A T FGF23 Missense_Mutation p.L193Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-05-4384-01 12 5021401 5021401 C T KCNA1 Missense_Mutation p.T286I 0.25 deleterious(0.04) possibly_damaging(0.595) TCGA-05-4384-01 12 57003980 57003980 A T BAZ2A Missense_Mutation p.V602E 0.26 tolerated(0.13) possibly_damaging(0.896) TCGA-05-4384-01 12 57974844 57974844 G A KIF5A Missense_Mutation p.A882T 0.34 tolerated(0.1) benign(0.053) TCGA-05-4384-01 12 79689917 79689917 C A SYT1 Nonsense_Mutation p.Y181* 0.19 TCGA-05-4384-01 13 53418865 53418865 G T PCDH8 Missense_Mutation p.Q1015K 0.16 deleterious(0) probably_damaging(0.991) TCGA-05-4384-01 13 84454982 84454982 G C SLITRK1 Missense_Mutation p.L221V 0.16 tolerated(0.31) benign(0.02) TCGA-05-4384-01 14 106725216 106725216 T G IGHV3-23 Silent p.V112V 0.11 TCGA-05-4384-01 14 106993970 106993970 C A IGHV3-48 Missense_Mutation p.E65D 0.26 deleterious_low_confidence(0.01) benign(0.414) TCGA-05-4384-01 14 23517504 23517504 G C CDH24 Silent p.G715G 0.17 TCGA-05-4384-01 14 24114489 24114489 T A DHRS2 Missense_Mutation p.V294E 0.25 deleterious_low_confidence(0.01) unknown(0) TCGA-05-4384-01 14 25075882 25075882 C T GZMH Missense_Mutation p.G223E 0.21 deleterious(0.03) possibly_damaging(0.814) TCGA-05-4384-01 14 64066555 64066555 G A WDR89 Nonsense_Mutation p.Q36* 0.07 TCGA-05-4384-01 14 66975144 66975144 C T GPHN 5'UTR 0.33 TCGA-05-4384-01 14 76231102 76231102 G T TTLL5 Missense_Mutation p.R565S 0.21 deleterious(0) benign(0.184) TCGA-05-4384-01 15 102191956 102191956 G A TM2D3 Nonsense_Mutation p.Q38* 0.07 TCGA-05-4384-01 15 22332776 22332776 G C RP11-69H14.6 Intron 0.11 TCGA-05-4384-01 15 25472159 25472159 G C SNORD115-33 5'Flank 0.36 TCGA-05-4384-01 15 29390729 29390729 G T APBA2 Missense_Mutation p.D430Y 0.22 deleterious(0.01) probably_damaging(0.927) TCGA-05-4384-01 15 55611455 55611455 A C PIGB Silent p.R3R 0.16 TCGA-05-4384-01 15 55611459 55611459 C A PIGB Missense_Mutation p.P4H 0.12 deleterious_low_confidence(0) possibly_damaging(0.737) TCGA-05-4384-01 15 72698971 72698971 T C TMEM202 Silent p.F122F 0.25 TCGA-05-4384-01 15 76222283 76222283 G T FBXO22 Missense_Mutation p.K229N 0.19 deleterious(0.01) possibly_damaging(0.628) TCGA-05-4384-01 15 86266516 86266516 G A AKAP13 Missense_Mutation p.S2241N 0.07 tolerated(0.22) benign(0.077) TCGA-05-4384-01 15 89382102 89382102 C A ACAN Silent p.R93R 0.25 TCGA-05-4384-01 16 17211541 17211541 G T XYLT1 Missense_Mutation p.A840E 0.23 tolerated(0.06) possibly_damaging(0.851) TCGA-05-4384-01 16 19451966 19451966 G T TMC5 Silent p.L202L 0.27 TCGA-05-4384-01 16 19451967 19451967 G T TMC5 Nonsense_Mutation p.G203* 0.25 TCGA-05-4384-01 16 3107615 3107615 G A MMP25 Splice_Site p.X336_splice 0.06 TCGA-05-4384-01 16 31382711 31382711 C G ITGAX Missense_Mutation p.P633R 0.18 tolerated(0.1) possibly_damaging(0.59) TCGA-05-4384-01 16 33020938 33020938 G T IGHV3OR16-8 Missense_Mutation p.V116L 0.23 deleterious_low_confidence(0.04) benign(0.01) TCGA-05-4384-01 16 61687897 61687897 C T CDH8 Missense_Mutation p.G672E 0.18 deleterious(0) probably_damaging(1) TCGA-05-4384-01 16 89603223 89603223 G T SPG7 Intron 0.08 TCGA-05-4384-01 17 37876038 37876038 A T ERBB2 Splice_Site p.X633_splice 0.27 TCGA-05-4384-01 17 37944531 37944531 C A IKZF3 Missense_Mutation p.S230I 0.19 deleterious(0) benign(0.183) TCGA-05-4384-01 17 40010662 40010662 G A KLHL11 Missense_Mutation p.S486L 0.23 tolerated(0.09) possibly_damaging(0.908) TCGA-05-4384-01 17 43175845 43175845 G T NMT1 Missense_Mutation p.R270L 0.22 deleterious(0.01) probably_damaging(0.979) TCGA-05-4384-01 17 43175846 43175846 G T NMT1 Silent p.R270R 0.22 TCGA-05-4384-01 17 56083844 56083844 T C SRSF1 Missense_Mutation p.D80G 0.11 tolerated(0.21) benign(0.029) TCGA-05-4384-01 17 73702103 73702103 G T SAP30BP Missense_Mutation p.G226C 0.18 deleterious(0) probably_damaging(0.993) TCGA-05-4384-01 17 7578235 7578235 T C TP53 Missense_Mutation p.Y205C 0.06 deleterious(0) probably_damaging(0.99) TCGA-05-4384-01 18 28650692 28650692 C A DSC2 Silent p.V750V 0.25 TCGA-05-4384-01 18 34853003 34853003 C G CELF4 Missense_Mutation p.A309P 0.07 tolerated(0.08) possibly_damaging(0.866) TCGA-05-4384-01 18 74980579 74980579 A G GALR1 Silent p.G257G 0.14 TCGA-05-4384-01 18 74980858 74980858 A C GALR1 Nonstop_Mutation p.*350Cext*? 0.06 TCGA-05-4384-01 18 9886910 9886910 A T TXNDC2 Missense_Mutation p.K145I 0.27 deleterious(0) probably_damaging(0.988) TCGA-05-4384-01 19 10600006 10600006 C A KEAP1 Missense_Mutation p.G524C 0.28 deleterious(0) probably_damaging(1) TCGA-05-4384-01 19 2213544 2213544 A - DOT1L Frame_Shift_Del p.N522Tfs*35 0.25 TCGA-05-4384-01 19 35829190 35829190 A C CD22 Missense_Mutation p.N369H 0.25 deleterious(0.03) probably_damaging(0.926) TCGA-05-4384-01 19 41807447 41807447 G T HNRNPUL1 Missense_Mutation p.V509F 0.21 deleterious(0) unknown(0) TCGA-05-4384-01 19 44896581 44896581 A T ZNF285 Missense_Mutation p.L22Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-05-4384-01 19 55445884 55445884 C A NLRP7 Missense_Mutation p.R815L 0.21 deleterious(0.01) benign(0.044) TCGA-05-4384-01 19 55666180 55666180 G A TNNI3 Missense_Mutation p.H101Y 0.25 deleterious(0.04) possibly_damaging(0.864) TCGA-05-4384-01 19 7687539 7687539 C A XAB2 Silent p.T460T 0.28 TCGA-05-4384-01 1 11151600 11151600 G A EXOSC10 Missense_Mutation p.P143S 0.14 tolerated(0.13) possibly_damaging(0.486) TCGA-05-4384-01 1 114680333 114680333 C A SYT6 Silent p.V200V 0.34 TCGA-05-4384-01 1 12711299 12711299 C T AADACL4 Missense_Mutation p.S109F 0.28 tolerated(0.21) possibly_damaging(0.832) TCGA-05-4384-01 1 146639438 146639438 C T PRKAB2 Silent p.R77R 0.16 TCGA-05-4384-01 1 155874261 155874261 C A RIT1 Missense_Mutation p.M107I 0.31 tolerated(0.07) probably_damaging(0.956) TCGA-05-4384-01 1 161928472 161928472 G T ATF6 3'UTR 0.18 TCGA-05-4384-01 1 17668890 17668890 G A PADI4 Missense_Mutation p.A310T 0.23 deleterious(0.02) benign(0.196) TCGA-05-4384-01 1 176811543 176811543 C A PAPPA2 Missense_Mutation p.L1777M 0.36 tolerated(0.24) possibly_damaging(0.553) TCGA-05-4384-01 1 177249934 177249934 G A BRINP2 Nonsense_Mutation p.W541* 0.11 TCGA-05-4384-01 1 200969648 200969648 C A KIF21B Missense_Mutation p.A519S 0.19 tolerated(1) benign(0) TCGA-05-4384-01 1 203020922 203020922 G C PPFIA4 Missense_Mutation p.V7L 0.18 tolerated_low_confidence(1) benign(0.001) TCGA-05-4384-01 1 208216417 208216417 G A PLXNA2 Missense_Mutation p.R1336W 0.39 deleterious(0) possibly_damaging(0.832) TCGA-05-4384-01 1 237765338 237765338 C A RYR2 Missense_Mutation p.T1537K 0.21 probably_damaging(0.999) TCGA-05-4384-01 1 240255621 240255621 G A FMN2 Missense_Mutation p.R71K 0.17 unknown(0) TCGA-05-4384-01 1 241797243 241797243 G A CHML Missense_Mutation p.P609L 0.20 deleterious(0) possibly_damaging(0.887) TCGA-05-4384-01 1 243354382 243354382 C A CEP170 Missense_Mutation p.R349I 0.24 deleterious(0.05) benign(0.027) TCGA-05-4384-01 1 247615143 247615143 C T OR2B11 Missense_Mutation p.A48T 0.24 tolerated(1) benign(0.002) TCGA-05-4384-01 1 247695442 247695442 G A OR2C3 Silent p.Y124Y 0.10 TCGA-05-4384-01 1 247978952 247978952 A G OR14A16 Missense_Mutation p.I27T 0.21 tolerated(0.19) benign(0) TCGA-05-4384-01 1 248512808 248512808 G T OR14C36 Silent p.L244L 0.18 TCGA-05-4384-01 1 248550951 248550951 C T OR2T6 Silent p.L14L 0.14 TCGA-05-4384-01 1 34006261 34006261 C T CSMD2 Silent p.G3021G 0.22 TCGA-05-4384-01 1 34330081 34330081 C T HMGB4 Missense_Mutation p.P97S 0.16 deleterious(0.02) probably_damaging(0.995) TCGA-05-4384-01 1 41456895 41456895 G A CTPS1 Missense_Mutation p.R205K 0.21 deleterious(0) probably_damaging(0.936) TCGA-05-4384-01 1 52824928 52824928 T A CC2D1B Missense_Mutation p.T374S 0.26 tolerated(0.42) benign(0.003) TCGA-05-4384-01 1 78959135 78959135 A T PTGFR Missense_Mutation p.Q236L 0.26 tolerated(0.17) benign(0.213) TCGA-05-4384-01 20 51871865 51871865 C A TSHZ2 Missense_Mutation p.A623D 0.17 tolerated(0.35) benign(0.138) TCGA-05-4384-01 20 57576645 57576645 T A CTSZ Missense_Mutation p.Q121L 0.28 deleterious(0) probably_damaging(1) TCGA-05-4384-01 20 61982143 61982143 C T CHRNA4 Missense_Mutation p.G207D 0.22 deleterious(0) probably_damaging(1) TCGA-05-4384-01 20 61982144 61982144 C T CHRNA4 Missense_Mutation p.G207S 0.22 tolerated(0.14) probably_damaging(1) TCGA-05-4384-01 21 11049502 11049502 A C BAGE2 RNA 0.05 TCGA-05-4384-01 21 15889331 15889331 C A SAMSN1 Missense_Mutation p.G122V 0.12 deleterious(0.04) probably_damaging(0.913) TCGA-05-4384-01 21 31964831 31964831 G T KRTAP6-3 Missense_Mutation p.G16W 0.18 unknown(0) TCGA-05-4384-01 21 47642573 47642573 T A LSS Silent p.S133S 0.07 TCGA-05-4384-01 22 44328953 44328953 C T PNPLA3 Missense_Mutation p.P228S 0.31 deleterious(0.03) possibly_damaging(0.685) TCGA-05-4384-01 22 50302947 50302947 G A ALG12 Missense_Mutation p.P238L 0.04 probably_damaging(0.983) TCGA-05-4384-01 22 51020255 51020255 C A CHKB Missense_Mutation p.A124S 0.22 deleterious(0.02) probably_damaging(0.932) TCGA-05-4384-01 22 51021107 51021107 C T CHKB Missense_Mutation p.R35Q 0.28 tolerated_low_confidence(0.26) benign(0.002) TCGA-05-4384-01 2 128347795 128347795 G A MYO7B Silent p.K661K 0.21 TCGA-05-4384-01 2 185802719 185802719 G T ZNF804A Nonsense_Mutation p.E866* 0.26 TCGA-05-4384-01 2 203630353 203630353 C T FAM117B Silent p.L546L 0.21 TCGA-05-4384-01 2 217724644 217724644 C T TNP1 Silent p.L38L 0.16 TCGA-05-4384-01 2 219873855 219873855 T A CCDC108 Missense_Mutation p.R1530W 0.25 deleterious(0.02) possibly_damaging(0.753) TCGA-05-4384-01 2 220085073 220085073 G T ATG9A 3'UTR 0.11 TCGA-05-4384-01 2 32422894 32422894 A G SLC30A6 Missense_Mutation p.N262D 0.24 tolerated(0.16) benign(0.087) TCGA-05-4384-01 2 47233194 47233195 CG - TTC7A Frame_Shift_Del p.S400* 0.19 TCGA-05-4384-01 2 73676086 73676093 ACTCACAC - ALMS1 Frame_Shift_Del p.Y810* 0.26 TCGA-05-4384-01 3 121305205 121305205 C A ARGFX Missense_Mutation p.L236I 0.20 tolerated(0.06) benign(0.095) TCGA-05-4384-01 3 12458450 12458450 C A PPARG Missense_Mutation p.T356K 0.16 deleterious(0.02) possibly_damaging(0.752) TCGA-05-4384-01 3 142496497 142496497 G A TRPC1 Missense_Mutation p.C219Y 0.25 deleterious(0) possibly_damaging(0.567) TCGA-05-4384-01 3 157823827 157823827 C T SHOX2 5'UTR 0.27 TCGA-05-4384-01 3 196386667 196386667 G T NRROS Silent p.V51V 0.22 TCGA-05-4384-01 3 41280817 41280817 T C CTNNB1 Missense_Mutation p.F777S 0.21 deleterious_low_confidence(0) benign(0.334) TCGA-05-4384-01 4 122261661 122261661 G T QRFPR Missense_Mutation p.H149N 0.23 tolerated(0.06) benign(0.018) TCGA-05-4384-01 4 122774156 122774156 C T BBS7 Silent p.V268V 0.31 TCGA-05-4384-01 4 55156542 55156542 T A PDGFRA Silent p.R981R 0.23 TCGA-05-4384-01 4 55968660 55968660 G T KDR Missense_Mutation p.T668K 0.24 tolerated(0.11) benign(0.069) TCGA-05-4384-01 4 77675651 77675651 A T SHROOM3 Missense_Mutation p.T1339S 0.17 tolerated(0.88) benign(0.004) TCGA-05-4384-01 5 140725310 140725310 C A PCDHGA3 Missense_Mutation p.D570E 0.06 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-05-4384-01 5 140755360 140755360 C A PCDHGA6 Missense_Mutation p.D570E 0.20 deleterious_low_confidence(0) possibly_damaging(0.796) TCGA-05-4384-01 5 150722498 150722498 G T SLC36A2 Missense_Mutation p.L131I 0.23 deleterious(0.02) possibly_damaging(0.899) TCGA-05-4384-01 5 176023823 176023823 G T GPRIN1 Missense_Mutation p.P1005T 0.17 tolerated(0.06) probably_damaging(0.998) TCGA-05-4384-01 5 179260106 179260106 A G SQSTM1 Missense_Mutation p.S277G 0.20 tolerated(0.64) benign(0.001) TCGA-05-4384-01 5 32074612 32074612 G A PDZD2 Missense_Mutation p.E1134K 0.14 tolerated(0.16) benign(0.075) TCGA-05-4384-01 5 50683340 50683340 T A ISL1 Missense_Mutation p.C79S 0.33 deleterious(0.01) possibly_damaging(0.855) TCGA-05-4384-01 5 865601 865601 G A BRD9 Missense_Mutation p.R541C 0.19 deleterious(0.01) benign(0.03) TCGA-05-4384-01 5 865602 865602 C A BRD9 Missense_Mutation p.E540D 0.18 tolerated(0.26) benign(0.005) TCGA-05-4384-01 5 95152247 95152247 C A GLRX Silent p.T97T 0.31 TCGA-05-4384-01 6 102250223 102250223 C G GRIK2 Silent p.L371L 0.36 TCGA-05-4384-01 6 139135693 139135693 A G ECT2L Silent p.Q44Q 0.09 TCGA-05-4384-01 6 31930285 31930285 G C SKIV2L Silent p.G378G 0.19 TCGA-05-4384-01 6 43017790 43017790 A G CUL7 Missense_Mutation p.W578R 0.27 deleterious(0) probably_damaging(0.998) TCGA-05-4384-01 6 56418066 56418066 A G DST Missense_Mutation p.V2552A 0.08 benign(0.06) TCGA-05-4384-01 6 82461603 82461603 C G FAM46A Missense_Mutation p.G86R 0.09 deleterious(0) probably_damaging(0.997) TCGA-05-4384-01 7 100349509 100349509 C A ZAN Missense_Mutation p.P594H 0.20 probably_damaging(0.999) TCGA-05-4384-01 7 128371179 128371179 G A FAM71F1 3'UTR 0.04 TCGA-05-4384-01 7 128846405 128846405 T C SMO Missense_Mutation p.V414A 0.20 deleterious(0.04) benign(0.088) TCGA-05-4384-01 7 131887475 131887475 G T PLXNA4 Missense_Mutation p.P839H 0.20 tolerated(0.08) possibly_damaging(0.855) TCGA-05-4384-01 7 142630623 142630623 C G TRPV5 5'UTR 0.31 TCGA-05-4384-01 7 142641808 142641808 C A KEL Silent p.A445A 0.24 TCGA-05-4384-01 7 143029825 143029825 C A CLCN1 Silent p.P420P 0.20 TCGA-05-4384-01 7 149480000 149480000 C T SSPO RNA 0.12 TCGA-05-4384-01 7 151962175 151962175 A C KMT2C Missense_Mutation p.L378V 0.03 probably_damaging(0.997) TCGA-05-4384-01 7 88964342 88964342 C A ZNF804B Silent p.I682I 0.25 TCGA-05-4384-01 8 10465434 10465434 C T RP1L1 Silent p.P2058P 0.25 TCGA-05-4384-01 8 125047562 125047562 C A FER1L6 Silent p.V777V 0.19 TCGA-05-4384-01 8 145058247 145058247 A G PARP10 Missense_Mutation p.V569A 0.21 tolerated(0.49) benign(0.004) TCGA-05-4384-01 8 77763345 77763345 G A ZFHX4 Silent p.K1396K 0.18 TCGA-05-4384-01 8 77776174 77776174 C A ZFHX4 Nonsense_Mutation p.C3408* 0.29 TCGA-05-4384-01 9 133946977 133946977 G - LAMC3 Frame_Shift_Del p.D1061Tfs*20 0.19 TCGA-05-4384-01 X 3240769 3240769 G C MXRA5 Nonsense_Mutation p.S986* 0.06 TCGA-05-4384-01 X 3573373 3573373 C A PRKX Missense_Mutation p.R139L 0.62 deleterious(0) probably_damaging(0.996) TCGA-05-4384-01 X 37028496 37028496 C T FAM47C Silent p.P671P 0.21 TCGA-05-4389-01 10 104573073 104573073 C G WBP1L Missense_Mutation p.S359R 0.35 deleterious(0.01) unknown(0) TCGA-05-4389-01 10 121591603 121591603 C G MCMBP Missense_Mutation p.D575H 0.16 deleterious(0.01) possibly_damaging(0.738) TCGA-05-4389-01 10 28905133 28905133 C T WAC Missense_Mutation p.H530Y 0.09 tolerated(0.38) possibly_damaging(0.51) TCGA-05-4389-01 10 45496131 45496131 G T C10orf25 Nonsense_Mutation p.Y59* 0.14 TCGA-05-4389-01 10 68686790 68686790 G A LRRTM3 Missense_Mutation p.R39K 0.08 deleterious(0.03) possibly_damaging(0.836) TCGA-05-4389-01 10 7755192 7755192 G A ITIH2 Silent p.V137V 0.22 TCGA-05-4389-01 10 82126613 82126613 A T DYDC2 Missense_Mutation p.Q161L 0.29 tolerated(0.65) benign(0.002) TCGA-05-4389-01 10 90332672 90332672 C A RNLS Missense_Mutation p.D172Y 0.16 deleterious(0.03) possibly_damaging(0.882) TCGA-05-4389-01 10 93238018 93238018 A - HECTD2 Frame_Shift_Del p.G222Vfs*36 0.25 TCGA-05-4389-01 10 97174268 97174268 C A SORBS1 Nonsense_Mutation p.G265* 0.27 TCGA-05-4389-01 11 10821641 10821641 G C EIF4G2 Silent p.L705L 0.04 TCGA-05-4389-01 11 118279753 118279753 G T ATP5L Missense_Mutation p.L84F 0.44 tolerated(0.26) benign(0.005) TCGA-05-4389-01 11 120996139 120996139 C T TECTA Silent p.Y444Y 0.46 TCGA-05-4389-01 11 124007327 124007327 G C VWA5A Missense_Mutation p.G524A 0.49 deleterious(0) possibly_damaging(0.792) TCGA-05-4389-01 11 124740078 124740078 C T ROBO3 Missense_Mutation p.R262C 0.07 deleterious(0) probably_damaging(0.984) TCGA-05-4389-01 11 1265896 1265896 C T MUC5B Missense_Mutation p.P2596S 0.10 unknown(0) TCGA-05-4389-01 11 1273700 1273700 G A MUC5B Silent p.P4997P 0.33 TCGA-05-4389-01 11 18497989 18497989 T C LDHAL6A Silent p.D217D 0.12 TCGA-05-4389-01 11 27528274 27528274 C G LIN7C Missense_Mutation p.R9P 0.12 tolerated_low_confidence(0.21) benign(0.111) TCGA-05-4389-01 11 30352809 30352809 T C ARL14EP Missense_Mutation p.F105S 0.12 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-05-4389-01 11 3381328 3381328 C A ZNF195 Nonsense_Mutation p.E304* 0.15 TCGA-05-4389-01 11 3661475 3661475 C T ART5 Missense_Mutation p.A62T 0.31 tolerated(0.33) benign(0.023) TCGA-05-4389-01 11 43411267 43411267 G C TTC17 Missense_Mutation p.Q105H 0.04 deleterious(0) probably_damaging(0.993) TCGA-05-4389-01 11 43411289 43411289 G A TTC17 Missense_Mutation p.D113N 0.07 deleterious(0) probably_damaging(1) TCGA-05-4389-01 11 46799028 46799029 - T CKAP5 Frame_Shift_Ins p.N941Kfs*45 0.31 TCGA-05-4389-01 11 47364614 47364614 C T MYBPC3 Missense_Mutation p.V437M 0.16 deleterious(0.04) benign(0.409) TCGA-05-4389-01 11 55136023 55136023 G T OR4A15 Missense_Mutation p.V222F 0.12 tolerated_low_confidence(0.76) benign(0.058) TCGA-05-4389-01 11 56230488 56230488 A G OR5M9 Silent p.Y130Y 0.44 TCGA-05-4389-01 11 62300197 62300197 G A AHNAK Silent p.T564T 0.27 TCGA-05-4389-01 11 62532822 62532822 C T POLR2G Missense_Mutation p.S115L 0.15 tolerated(0.14) benign(0.032) TCGA-05-4389-01 11 64056845 64056845 G T GPR137 3'UTR 0.51 TCGA-05-4389-01 11 65732040 65732040 G C SART1 Missense_Mutation p.K142N 0.13 deleterious(0.02) possibly_damaging(0.635) TCGA-05-4389-01 11 6789999 6789999 C A OR2AG2 Missense_Mutation p.G64W 0.19 deleterious(0.02) benign(0.043) TCGA-05-4389-01 11 6898297 6898297 T A OR10A4 Missense_Mutation p.I140K 0.19 tolerated(0.65) benign(0) TCGA-05-4389-01 11 70184483 70184483 C G PPFIA1 Missense_Mutation p.Q499E 0.03 tolerated(0.21) benign(0.005) TCGA-05-4389-01 11 72290425 72290425 G A PDE2A Silent p.D753D 0.30 TCGA-05-4389-01 11 76507537 76507537 C G TSKU Missense_Mutation p.P293A 0.40 tolerated(0.71) benign(0.168) TCGA-05-4389-01 11 7982783 7982783 G C NLRP10 Missense_Mutation p.L126V 0.13 deleterious(0) possibly_damaging(0.591) TCGA-05-4389-01 11 7982784 7982784 G T NLRP10 Silent p.L125L 0.13 TCGA-05-4389-01 11 8159825 8159825 T C RIC3 Missense_Mutation p.K141E 0.22 deleterious(0.05) possibly_damaging(0.615) TCGA-05-4389-01 11 92534374 92534374 T C FAT3 Missense_Mutation p.I2732T 0.11 benign(0.007) TCGA-05-4389-01 12 111099152 111099152 G A HVCN1 Silent p.N41N 0.22 TCGA-05-4389-01 12 121098634 121098634 T A CABP1 Silent p.A310A 0.25 TCGA-05-4389-01 12 126138528 126138528 C T TMEM132B Missense_Mutation p.P837S 0.05 tolerated(1) benign(0.002) TCGA-05-4389-01 12 21614019 21614019 G A PYROXD1 Missense_Mutation p.E271K 0.11 tolerated(0.06) benign(0.191) TCGA-05-4389-01 12 2614019 2614019 C G CACNA1C Silent p.A375A 0.16 TCGA-05-4389-01 12 45169914 45169914 C T NELL2 Missense_Mutation p.R311Q 0.06 deleterious(0.03) benign(0.02) TCGA-05-4389-01 12 49231355 49231355 C T DDX23 Silent p.Q235Q 0.09 TCGA-05-4389-01 12 50829374 50829374 A G LARP4 Missense_Mutation p.T168A 0.32 deleterious(0.05) benign(0.26) TCGA-05-4389-01 12 53202129 53202129 G A KRT4 Silent p.L358L 0.30 TCGA-05-4389-01 12 55714574 55714574 T C OR6C1 Missense_Mutation p.F64S 0.26 deleterious_low_confidence(0.01) probably_damaging(0.955) TCGA-05-4389-01 12 6483545 6483545 G A SCNN1A Silent p.L194L 0.15 TCGA-05-4389-01 12 72036255 72036255 C T ZFC3H1 Missense_Mutation p.E530K 0.24 deleterious(0) probably_damaging(0.986) TCGA-05-4389-01 12 72050808 72050808 G A ZFC3H1 Missense_Mutation p.T291I 0.20 tolerated(0.2) benign(0.001) TCGA-05-4389-01 12 78562616 78562616 G T NAV3 Missense_Mutation p.A1651S 0.28 deleterious(0.03) benign(0.121) TCGA-05-4389-01 13 101257341 101257341 G C TMTC4 Missense_Mutation p.I730M 0.17 tolerated(0.1) benign(0.015) TCGA-05-4389-01 13 94482698 94482698 C A GPC6 Missense_Mutation p.P204H 0.18 deleterious(0) probably_damaging(0.994) TCGA-05-4389-01 13 95724037 95724037 C A ABCC4 Missense_Mutation p.R1030L 0.23 deleterious(0.01) benign(0.011) TCGA-05-4389-01 14 100820874 100820874 T G WARS Missense_Mutation p.E151A 0.13 deleterious(0.01) possibly_damaging(0.893) TCGA-05-4389-01 14 105415206 105415206 C T AHNAK2 Silent p.G2194G 0.36 TCGA-05-4389-01 14 105417681 105417681 C T AHNAK2 Silent p.G1369G 0.50 TCGA-05-4389-01 14 105517957 105517957 C T GPR132 Missense_Mutation p.V173I 0.16 tolerated(0.85) benign(0.053) TCGA-05-4389-01 14 106236312 106236312 G A IGHG3 Silent p.L165L 0.29 TCGA-05-4389-01 14 106866502 106866502 T A IGHV3-38 Missense_Mutation p.R84S 0.05 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-05-4389-01 14 107083489 107083489 G T IGHV4-59 Missense_Mutation p.L39I 0.12 deleterious_low_confidence(0.03) probably_damaging(0.964) TCGA-05-4389-01 14 20444056 20444057 - C OR4K15 Frame_Shift_Ins p.F127Sfs*9 0.18 TCGA-05-4389-01 14 23900998 23900998 C T MYH7 Missense_Mutation p.R204H 0.20 tolerated(0.05) possibly_damaging(0.505) TCGA-05-4389-01 14 36840725 36840725 C T DPPA3P2 RNA 0.15 TCGA-05-4389-01 14 42355929 42355929 C A LRFN5 Missense_Mutation p.A34E 0.18 deleterious(0) probably_damaging(0.937) TCGA-05-4389-01 14 50307515 50307515 C T NEMF Missense_Mutation p.D143N 0.07 deleterious(0) possibly_damaging(0.906) TCGA-05-4389-01 14 77599975 77599975 G C ZDHHC22 3'UTR 0.38 TCGA-05-4389-01 14 92249542 92249542 C T TC2N Missense_Mutation p.E459K 0.07 tolerated(0.32) benign(0.147) TCGA-05-4389-01 14 92249555 92249555 C T TC2N Splice_Site p.X455_splice 0.06 TCGA-05-4389-01 14 95034512 95034512 T G SERPINA4 Missense_Mutation p.S324A 0.12 deleterious(0.05) benign(0.38) TCGA-05-4389-01 14 96949491 96949491 G A AK7 Missense_Mutation p.E637K 0.20 tolerated(0.9) benign(0.012) TCGA-05-4389-01 15 22473002 22473002 G A IGHV4OR15-8 Missense_Mutation p.S90L 0.04 deleterious(0.01) benign(0.312) TCGA-05-4389-01 15 24922224 24922224 C A NPAP1 Missense_Mutation p.P404T 0.18 tolerated(0.07) possibly_damaging(0.72) TCGA-05-4389-01 15 25415905 25415905 G A SNORD115-1 RNA 0.10 TCGA-05-4389-01 15 31355390 31355390 A T TRPM1 Missense_Mutation p.V316E 0.40 deleterious(0) probably_damaging(0.997) TCGA-05-4389-01 15 45387213 45387213 T A DUOX2 Missense_Mutation p.N1439I 0.27 tolerated(0.08) possibly_damaging(0.806) TCGA-05-4389-01 15 58247323 58247323 G C ALDH1A2 3'UTR 0.06 TCGA-05-4389-01 15 76073178 76073178 C A RN7SL319P 5'Flank 0.25 TCGA-05-4389-01 15 79186452 79186452 A G MORF4L1 Missense_Mutation p.M267V 0.39 deleterious(0.02) benign(0.341) TCGA-05-4389-01 15 91172586 91172586 C T CRTC3 Missense_Mutation p.S363L 0.19 deleterious(0.01) benign(0.005) TCGA-05-4389-01 15 99478247 99478247 G T IGF1R Missense_Mutation p.A1051S 0.16 deleterious(0) probably_damaging(0.998) TCGA-05-4389-01 16 1470042 1470042 C G C16orf91 Missense_Mutation p.D325H 0.11 deleterious_low_confidence(0) unknown(0) TCGA-05-4389-01 16 23847552 23847552 G T PRKCB Missense_Mutation p.R19L 0.26 tolerated(0.06) probably_damaging(0.954) TCGA-05-4389-01 16 5075361 5075361 C A NAGPA 3'UTR 0.36 TCGA-05-4389-01 16 5075362 5075362 C A NAGPA 3'UTR 0.38 TCGA-05-4389-01 16 67314355 67314355 G A PLEKHG4 Silent p.A136A 0.04 TCGA-05-4389-01 16 708613 708613 A G WDR90 Missense_Mutation p.K952R 0.41 tolerated(0.19) benign(0.001) TCGA-05-4389-01 16 72158704 72158704 C A PMFBP1 Missense_Mutation p.A851S 0.33 tolerated(0.1) benign(0.039) TCGA-05-4389-01 16 78458910 78458910 C G WWOX Nonsense_Mutation p.S250* 0.08 TCGA-05-4389-01 17 10298621 10298621 C A MYH8 Silent p.V1597V 0.16 TCGA-05-4389-01 17 11597208 11597208 C T DNAH9 Silent p.I1546I 0.20 TCGA-05-4389-01 17 25950344 25950344 A C KSR1 3'UTR 0.16 TCGA-05-4389-01 17 27936421 27936421 G A ANKRD13B Silent p.V268V 0.06 TCGA-05-4389-01 17 29283319 29283319 G A ADAP2 Missense_Mutation p.E315K 0.05 tolerated(0.37) benign(0.201) TCGA-05-4389-01 17 3119530 3119530 T G OR1A1 Missense_Mutation p.F206V 0.24 tolerated(0.36) probably_damaging(1) TCGA-05-4389-01 17 33462471 33462471 C G NLE1 Splice_Site p.X338_splice 0.27 TCGA-05-4389-01 17 34077194 34077198 CCTCG T GAS2L2 Frame_Shift_Del p.E176Rfs*38 0.28 TCGA-05-4389-01 17 37239790 37239790 C G PLXDC1 Missense_Mutation p.C304S 0.33 deleterious(0) probably_damaging(1) TCGA-05-4389-01 17 38926018 38926018 G A KRT26 Silent p.S319S 0.04 TCGA-05-4389-01 17 39925303 39925303 G T JUP Missense_Mutation p.L209M 0.19 deleterious(0.01) probably_damaging(0.991) TCGA-05-4389-01 17 4689248 4689248 C G VMO1 Missense_Mutation p.E99Q 0.09 tolerated(0.1) benign(0.047) TCGA-05-4389-01 17 61559074 61559074 G C ACE Missense_Mutation p.D365H 0.04 deleterious(0) probably_damaging(0.998) TCGA-05-4389-01 17 66883575 66883575 C T ABCA8 Missense_Mutation p.D1033N 0.04 deleterious(0) probably_damaging(0.99) TCGA-05-4389-01 17 74570505 74570505 G C ST6GALNAC2 Silent p.L101L 0.22 TCGA-05-4389-01 17 7636522 7636522 C T DNAH2 Missense_Mutation p.R173W 0.24 possibly_damaging(0.677) TCGA-05-4389-01 17 7640477 7640477 C T DNAH2 Silent p.I357I 0.14 TCGA-05-4389-01 17 7644211 7644211 G A DNAH2 Silent p.R530R 0.15 TCGA-05-4389-01 17 7646444 7646444 G C DNAH2 Missense_Mutation p.D630H 0.12 probably_damaging(0.93) TCGA-05-4389-01 17 77073539 77073539 C G ENGASE Silent p.V58V 0.19 TCGA-05-4389-01 17 77984271 77984271 G C TBC1D16 Missense_Mutation p.P156R 0.16 tolerated(0.28) benign(0.187) TCGA-05-4389-01 17 9684874 9684874 C T DHRS7C Silent p.L64L 0.24 TCGA-05-4389-01 18 13049425 13049425 G A CEP192 Missense_Mutation p.V879M 0.28 tolerated(0.27) benign(0.045) TCGA-05-4389-01 18 29437671 29437671 C G TRAPPC8 Missense_Mutation p.G1007A 0.33 tolerated(0.69) benign(0.018) TCGA-05-4389-01 18 40850212 40850212 G A SYT4 3'UTR 0.34 TCGA-05-4389-01 18 44268875 44268875 G C ST8SIA5 Missense_Mutation p.L107V 0.26 probably_damaging(0.997) TCGA-05-4389-01 18 44555306 44555306 G T TCEB3C Missense_Mutation p.P303Q 0.02 deleterious(0.02) probably_damaging(0.996) TCGA-05-4389-01 18 46956785 46956785 T A DYM 5'UTR 0.28 TCGA-05-4389-01 18 67697257 67697257 C T RTTN Silent p.L1912L 0.10 TCGA-05-4389-01 18 72238504 72238504 C T CNDP1 Silent p.L280L 0.10 TCGA-05-4389-01 19 10602840 10602840 G C KEAP1 Missense_Mutation p.F246L 0.42 deleterious(0) possibly_damaging(0.52) TCGA-05-4389-01 19 11022908 11022908 G C CARM1 Missense_Mutation p.A203P 0.43 deleterious(0.01) probably_damaging(0.985) TCGA-05-4389-01 19 14024056 14024056 G A CC2D1A Missense_Mutation p.E152K 0.10 tolerated(0.24) benign(0.045) TCGA-05-4389-01 19 34868423 34868423 G T GPI Intron 0.21 TCGA-05-4389-01 19 34868425 34868425 C T GPI Intron 0.21 TCGA-05-4389-01 19 38817502 38817502 G A KCNK6 Missense_Mutation p.A198T 0.15 tolerated(0.5) benign(0.012) TCGA-05-4389-01 19 39023335 39023335 G A RYR1 Missense_Mutation p.E3740K 0.32 benign(0.032) TCGA-05-4389-01 19 44237005 44237005 C G SMG9 Intron 0.08 TCGA-05-4389-01 19 49116501 49116501 C T FAM83E Silent p.A43A 0.14 TCGA-05-4389-01 19 49564715 49564715 C G NTF4 Missense_Mutation p.L180F 0.06 deleterious(0.02) probably_damaging(1) TCGA-05-4389-01 19 58773673 58773673 G C ZNF544 Missense_Mutation p.Q567H 0.05 deleterious(0) possibly_damaging(0.815) TCGA-05-4389-01 19 58983439 58983439 C T ZNF324 Missense_Mutation p.S527L 0.10 tolerated_low_confidence(0.15) benign(0.002) TCGA-05-4389-01 19 9452759 9452759 G C ZNF559 Missense_Mutation p.R211T 0.45 deleterious(0.04) benign(0.023) TCGA-05-4389-01 1 10436630 10436630 C G KIF1B Missense_Mutation p.S1766R 0.48 tolerated_low_confidence(0.14) benign(0.021) TCGA-05-4389-01 1 110735252 110735252 A G SLC6A17 Missense_Mutation p.T411A 0.20 tolerated(0.54) benign(0.012) TCGA-05-4389-01 1 144902975 144902975 C T PDE4DIP Intron 0.16 TCGA-05-4389-01 1 145525061 145525061 C T ITGA10 5'UTR 0.05 TCGA-05-4389-01 1 149858806 149858806 G A HIST2H2AC Silent p.L94L 0.08 TCGA-05-4389-01 1 149885007 149885007 C A SV2A Missense_Mutation p.G129V 0.09 tolerated(0.31) benign(0) TCGA-05-4389-01 1 150464139 150464139 G A TARS2 Splice_Site p.X232_splice 0.17 TCGA-05-4389-01 1 151138584 151138584 G A SCNM1 5'UTR 0.36 TCGA-05-4389-01 1 152944717 152944717 C T SPRR4 3'UTR 0.17 TCGA-05-4389-01 1 153598847 153598847 G A S100A13 Silent p.S34S 0.09 TCGA-05-4389-01 1 154422396 154422396 A T IL6R Missense_Mutation p.T336S 0.12 tolerated(0.48) benign(0.345) TCGA-05-4389-01 1 157509129 157509129 G T FCRL5 Missense_Mutation p.N383K 0.13 deleterious(0.01) benign(0.099) TCGA-05-4389-01 1 158584068 158584068 G A SPTA1 Silent p.L2273L 0.17 TCGA-05-4389-01 1 175360440 175360440 C A TNR Silent p.S497S 0.35 TCGA-05-4389-01 1 183908081 183908081 C A COLGALT2 Missense_Mutation p.Q565H 0.25 deleterious(0) possibly_damaging(0.615) TCGA-05-4389-01 1 20073736 20073736 C T TMCO4 Missense_Mutation p.R178Q 0.07 deleterious(0.04) benign(0.003) TCGA-05-4389-01 1 204228701 204228701 T A PLEKHA6 Missense_Mutation p.E231V 0.15 deleterious(0.02) possibly_damaging(0.889) TCGA-05-4389-01 1 204228702 204228702 C A PLEKHA6 Nonsense_Mutation p.E231* 0.15 TCGA-05-4389-01 1 205689671 205689671 C T NUCKS1 Missense_Mutation p.E114K 0.07 tolerated(0.06) benign(0.023) TCGA-05-4389-01 1 205740776 205740776 C G RAB7L1 Missense_Mutation p.E68Q 0.22 deleterious(0) probably_damaging(1) TCGA-05-4389-01 1 207751391 207751391 G T CR1 Silent p.V1593V 0.12 TCGA-05-4389-01 1 227441855 227441855 A G CDC42BPA Silent p.A60A 0.11 TCGA-05-4389-01 1 233514864 233514864 G T MLK4 Missense_Mutation p.M704I 0.20 tolerated(0.36) benign(0.006) TCGA-05-4389-01 1 237774276 237774276 C A RYR2 Missense_Mutation p.P1633H 0.37 probably_damaging(0.976) TCGA-05-4389-01 1 247265290 247265290 T C ZNF669 Silent p.V129V 0.49 TCGA-05-4389-01 1 31769485 31769485 C A SNRNP40 Missense_Mutation p.Q38H 0.40 tolerated(0.15) benign(0.088) TCGA-05-4389-01 1 70541760 70541760 G T LRRC7 Missense_Mutation p.A1373S 0.33 tolerated(0.34) benign(0.106) TCGA-05-4389-01 1 78194222 78194222 C A USP33 Missense_Mutation p.R329I 0.33 deleterious(0.04) possibly_damaging(0.629) TCGA-05-4389-01 1 82409320 82409320 T G LPHN2 Missense_Mutation p.D355E 0.15 deleterious(0.03) benign(0.01) TCGA-05-4389-01 20 13053003 13053003 G T SPTLC3 Missense_Mutation p.G135W 0.15 deleterious(0) probably_damaging(0.952) TCGA-05-4389-01 20 32302524 32302524 C A PXMP4 Silent p.R44R 0.31 TCGA-05-4389-01 20 32302525 32302525 C A PXMP4 Missense_Mutation p.R44L 0.31 deleterious(0) probably_damaging(1) TCGA-05-4389-01 20 34240421 34240421 A C RBM12 3'UTR 0.35 TCGA-05-4389-01 20 36641892 36641892 G A TTI1 Silent p.S109S 0.34 TCGA-05-4389-01 20 3726567 3726567 G T HSPA12B Silent p.L188L 0.05 TCGA-05-4389-01 20 3845224 3845224 C T MAVS Missense_Mutation p.P316L 0.13 tolerated(0.05) benign(0.015) TCGA-05-4389-01 20 43752329 43752329 G T WFDC12 3'UTR 0.15 TCGA-05-4389-01 20 46319006 46319006 C T SULF2 Missense_Mutation p.V201M 0.09 tolerated(0.2) benign(0.097) TCGA-05-4389-01 20 48523254 48523254 C T SPATA2 Silent p.E155E 0.35 TCGA-05-4389-01 21 10951323 10951323 G A TPTE Missense_Mutation p.S130F 0.19 deleterious(0.04) possibly_damaging(0.904) TCGA-05-4389-01 21 19737487 19737487 T A TMPRSS15 Missense_Mutation p.E248V 0.27 deleterious(0.03) benign(0.158) TCGA-05-4389-01 21 31812989 31812989 T C KRTAP15-1 Missense_Mutation p.L115P 0.23 deleterious(0) benign(0.275) TCGA-05-4389-01 22 31486831 31486831 G T SMTN Silent p.S301S 0.14 TCGA-05-4389-01 22 31658126 31658126 C G LIMK2 Missense_Mutation p.N165K 0.14 tolerated(0.14) benign(0.05) TCGA-05-4389-01 22 33700318 33700318 C T LARGE Missense_Mutation p.V543M 0.19 deleterious(0) probably_damaging(0.979) TCGA-05-4389-01 22 35463277 35463277 G T ISX Missense_Mutation p.G66V 0.42 tolerated(0.37) benign(0.01) TCGA-05-4389-01 22 43933318 43933318 C G EFCAB6 Silent p.L1329L 0.05 TCGA-05-4389-01 22 44692714 44692714 C T KIAA1644 Missense_Mutation p.R40H 0.04 tolerated(0.1) benign(0.003) TCGA-05-4389-01 2 128018852 128018852 G A ERCC3 Silent p.Y672Y 0.04 TCGA-05-4389-01 2 130951907 130951907 C A TUBA3E Missense_Mutation p.A170S 0.17 tolerated_low_confidence(1) benign(0.015) TCGA-05-4389-01 2 132237774 132237774 G T TUBA3D Missense_Mutation p.A170S 0.04 tolerated_low_confidence(1) benign(0.015) TCGA-05-4389-01 2 140992396 140992396 T C LRP1B Missense_Mutation p.I4540V 0.28 benign(0.001) TCGA-05-4389-01 2 162735721 162735721 T A SLC4A10 Missense_Mutation p.D343E 0.18 tolerated(1) benign(0.004) TCGA-05-4389-01 2 1652006 1652006 T A PXDN Silent p.A1182A 0.21 TCGA-05-4389-01 2 175301048 175301048 C G GPR155 Silent p.V803V 0.03 TCGA-05-4389-01 2 179425729 179425729 A G TTN Missense_Mutation p.I28377T 0.40 TCGA-05-4389-01 2 179606566 179606566 A G TTN Silent p.L3798L 0.15 TCGA-05-4389-01 2 192700900 192700900 C T SDPR Missense_Mutation p.A343T 0.23 tolerated(1) benign(0.001) TCGA-05-4389-01 2 201718134 201718134 G C CLK1 Silent p.L492L 0.09 TCGA-05-4389-01 2 210557842 210557842 C T MAP2 Silent p.P316P 0.34 TCGA-05-4389-01 2 210570428 210570428 C T MAP2 Missense_Mutation p.S1570F 0.20 deleterious(0.01) probably_damaging(0.933) TCGA-05-4389-01 2 219896286 219896286 C T CCDC108 Missense_Mutation p.R247H 0.21 deleterious_low_confidence(0.02) unknown(0) TCGA-05-4389-01 2 241826542 241826542 G A C2orf54 Missense_Mutation p.S430F 0.22 deleterious(0) possibly_damaging(0.819) TCGA-05-4389-01 2 24260579 24260579 G C C2orf44 Missense_Mutation p.Q596E 0.06 tolerated(0.15) benign(0.013) TCGA-05-4389-01 2 277226 277226 G T ACP1 Splice_Site p.X134_splice 0.24 TCGA-05-4389-01 2 31489172 31489172 C T EHD3 Missense_Mutation p.R404W 0.19 deleterious(0.02) benign(0.339) TCGA-05-4389-01 2 70528037 70528037 C G FAM136A Missense_Mutation p.E55Q 0.14 tolerated(0.11) possibly_damaging(0.642) TCGA-05-4389-01 2 80101241 80101241 G A CTNNA2 Missense_Mutation p.A209T 0.21 deleterious(0) probably_damaging(1) TCGA-05-4389-01 2 96949642 96949642 T C SNRNP200 Missense_Mutation p.K1498R 0.39 tolerated(1) benign(0.107) TCGA-05-4389-01 3 127381120 127381120 A G PODXL2 Missense_Mutation p.Y391C 0.38 deleterious(0) probably_damaging(0.95) TCGA-05-4389-01 3 141006210 141006210 C T ACPL2 Silent p.S140S 0.27 TCGA-05-4389-01 3 14712462 14712462 G C CCDC174 Missense_Mutation p.E389Q 0.14 deleterious(0) possibly_damaging(0.727) TCGA-05-4389-01 3 189675648 189675648 C T LEPREL1 3'UTR 0.22 TCGA-05-4389-01 3 30842577 30842577 G T GADL1 Missense_Mutation p.L352I 0.47 tolerated(0.19) possibly_damaging(0.611) TCGA-05-4389-01 3 41266124 41266124 A G CTNNB1 Missense_Mutation p.T41A 0.42 deleterious(0) possibly_damaging(0.844) TCGA-05-4389-01 3 44635634 44635634 G A ZNF660 5'UTR 0.12 TCGA-05-4389-01 3 72866403 72866403 C T SHQ1 Missense_Mutation p.R287H 0.21 deleterious(0.02) probably_damaging(0.963) TCGA-05-4389-01 4 114278661 114278661 A - ANK2 Frame_Shift_Del p.T2963Pfs*10 0.12 TCGA-05-4389-01 4 126240611 126240611 C T FAT4 Silent p.F1015F 0.32 TCGA-05-4389-01 4 129925026 129925026 T C SCLT1 Missense_Mutation p.H99R 0.46 deleterious(0.01) probably_damaging(0.979) TCGA-05-4389-01 4 140270690 140270690 G A NAA15 Missense_Mutation p.E256K 0.24 deleterious(0) possibly_damaging(0.724) TCGA-05-4389-01 4 143081533 143081533 G A INPP4B Missense_Mutation p.S514L 0.18 tolerated(0.22) possibly_damaging(0.81) TCGA-05-4389-01 4 164534638 164534638 A T MARCH1 Intron 0.15 TCGA-05-4389-01 4 187627769 187627769 G A FAT1 Silent p.Y1071Y 0.25 TCGA-05-4389-01 4 25370866 25370866 A G ZCCHC4 3'UTR 0.28 TCGA-05-4389-01 4 62863911 62863911 G T LPHN3 Missense_Mutation p.G1040V 0.25 tolerated(0.77) possibly_damaging(0.739) TCGA-05-4389-01 4 73012878 73012878 C G NPFFR2 Nonsense_Mutation p.Y306* 0.10 TCGA-05-4389-01 4 77116918 77116918 C G SCARB2 Missense_Mutation p.E73Q 0.04 tolerated(0.58) benign(0.128) TCGA-05-4389-01 4 78652569 78652569 T G CNOT6L Missense_Mutation p.L332F 0.30 tolerated(0.08) benign(0.309) TCGA-05-4389-01 4 80329119 80329119 T C GK2 Missense_Mutation p.N79S 0.45 tolerated(0.14) benign(0.005) TCGA-05-4389-01 4 85716110 85716110 C A WDFY3 Missense_Mutation p.A1064S 0.33 deleterious(0.04) benign(0.296) TCGA-05-4389-01 4 85716111 85716111 C G WDFY3 Missense_Mutation p.L1063F 0.35 deleterious(0.01) possibly_damaging(0.846) TCGA-05-4389-01 4 89334306 89334306 C T HERC6 Silent p.F482F 0.12 TCGA-05-4389-01 4 93225765 93225765 T A GRID2 5'UTR 0.28 TCGA-05-4389-01 5 108133869 108133869 C T FER 5'UTR 0.43 TCGA-05-4389-01 5 140589829 140589829 C T PCDHB12 Silent p.A450A 0.48 TCGA-05-4389-01 5 15937008 15937008 C T FBXL7 Missense_Mutation p.L397F 0.18 deleterious(0) probably_damaging(0.999) TCGA-05-4389-01 5 24537720 24537720 C A CDH10 Missense_Mutation p.G99C 0.23 deleterious(0) probably_damaging(0.999) TCGA-05-4389-01 5 26906156 26906156 C A CDH9 Missense_Mutation p.M241I 0.23 deleterious(0.02) probably_damaging(0.941) TCGA-05-4389-01 5 34824141 34824141 G C RAI14 Missense_Mutation p.E735Q 0.05 deleterious(0.01) probably_damaging(0.991) TCGA-05-4389-01 5 40764982 40764982 G C PRKAA1 Missense_Mutation p.P409A 0.14 tolerated(0.15) benign(0.373) TCGA-05-4389-01 5 639206 639206 G A CEP72 Silent p.P403P 0.12 TCGA-05-4389-01 5 68670478 68670478 G A RAD17 Silent p.K108K 0.12 TCGA-05-4389-01 6 108041921 108041921 T A SCML4 Missense_Mutation p.E320V 0.15 tolerated(0.1) benign(0.028) TCGA-05-4389-01 6 129762061 129762061 C T LAMA2 Silent p.L2062L 0.06 TCGA-05-4389-01 6 135763829 135763829 G C AHI1 Missense_Mutation p.H601Q 0.30 tolerated(0.16) benign(0.043) TCGA-05-4389-01 6 150064778 150064778 T A NUP43 Missense_Mutation p.N106I 0.47 deleterious(0.01) benign(0.138) TCGA-05-4389-01 6 158924616 158924616 G A TULP4 Silent p.V1307V 0.12 TCGA-05-4389-01 6 25917311 25917311 G A SLC17A2 Silent p.S218S 0.09 TCGA-05-4389-01 6 29080183 29080183 T A OR2J3 Nonsense_Mutation p.C172* 0.09 TCGA-05-4389-01 6 32156269 32156269 C G PBX2 Missense_Mutation p.R103P 0.23 deleterious(0.01) probably_damaging(0.976) TCGA-05-4389-01 6 32156270 32156270 G A PBX2 Missense_Mutation p.R103W 0.24 deleterious(0) probably_damaging(0.985) TCGA-05-4389-01 6 39512386 39512386 T C KIF6 Silent p.K457K 0.08 TCGA-05-4389-01 6 41743230 41743230 G T FRS3 Silent p.L60L 0.12 TCGA-05-4389-01 6 44274243 44274243 C A AARS2 Missense_Mutation p.R392S 0.04 deleterious(0) benign(0.174) TCGA-05-4389-01 6 49753774 49753774 G T PGK2 Missense_Mutation p.T376N 0.23 deleterious(0) probably_damaging(1) TCGA-05-4389-01 6 7414615 7414615 G A RIOK1 Missense_Mutation p.D530N 0.15 deleterious(0.01) benign(0.094) TCGA-05-4389-01 6 90438775 90438775 C A MDN1 Missense_Mutation p.A1742S 0.09 probably_damaging(0.994) TCGA-05-4389-01 6 90503650 90503650 T A MDN1 Missense_Mutation p.Q229L 0.39 benign(0.004) TCGA-05-4389-01 7 102016729 102016729 G A PRKRIP1 5'UTR 0.14 TCGA-05-4389-01 7 106508499 106508499 G A PIK3CG Missense_Mutation p.V165I 0.14 tolerated(0.23) benign(0.001) TCGA-05-4389-01 7 111617307 111617307 G A DOCK4 Missense_Mutation p.P194L 0.21 tolerated(0.2) benign(0.048) TCGA-05-4389-01 7 111634226 111634226 T C DOCK4 Silent p.L93L 0.16 TCGA-05-4389-01 7 119915637 119915637 G A KCND2 Silent p.L317L 0.10 TCGA-05-4389-01 7 128457828 128457828 A G CCDC136 Missense_Mutation p.N1127S 0.17 tolerated(0.14) benign(0.008) TCGA-05-4389-01 7 129736765 129736765 G C KLHDC10 Missense_Mutation p.K57N 0.10 deleterious_low_confidence(0.01) benign(0.005) TCGA-05-4389-01 7 140481402 140481402 C A BRAF Missense_Mutation p.G469V 0.37 deleterious(0) probably_damaging(0.998) TCGA-05-4389-01 7 158555808 158555808 C T ESYT2 Missense_Mutation p.D432N 0.20 deleterious(0) probably_damaging(0.924) TCGA-05-4389-01 7 22259492 22259492 G A RAPGEF5 Missense_Mutation p.S177F 0.06 deleterious(0.02) benign(0.014) TCGA-05-4389-01 7 30963178 30963178 C T AQP1 Silent p.G248G 0.27 TCGA-05-4389-01 7 54823477 54823477 G A SEC61G Silent p.I64I 0.13 TCGA-05-4389-01 7 552037 552037 C G PDGFA Missense_Mutation p.K72N 0.06 tolerated(0.22) benign(0.012) TCGA-05-4389-01 7 57188723 57188723 A T ZNF479 Silent p.G133G 0.35 TCGA-05-4389-01 7 64852924 64852924 G A ZNF92 Missense_Mutation p.R38K 0.04 deleterious(0.03) probably_damaging(0.992) TCGA-05-4389-01 7 77538221 77538221 T - PHTF2 Frame_Shift_Del p.I152Mfs*11 0.32 TCGA-05-4389-01 7 91737903 91737903 C T AKAP9 Missense_Mutation p.T3881I 0.11 probably_damaging(0.982) TCGA-05-4389-01 8 101105679 101105679 A C RGS22 Missense_Mutation p.L38R 0.32 deleterious(0) possibly_damaging(0.851) TCGA-05-4389-01 8 101608886 101608886 C G SNX31 Missense_Mutation p.C320S 0.39 tolerated(0.23) benign(0.019) TCGA-05-4389-01 8 114290863 114290863 C A CSMD3 Missense_Mutation p.D158Y 0.23 deleterious(0) benign(0.21) TCGA-05-4389-01 8 146156370 146156370 G A ZNF16 Silent p.Y601Y 0.31 TCGA-05-4389-01 8 28654152 28654152 G C INTS9 Silent p.L255L 0.37 TCGA-05-4389-01 8 30924661 30924661 C T WRN Missense_Mutation p.T206I 0.07 deleterious(0) probably_damaging(0.953) TCGA-05-4389-01 8 42977285 42977285 A G POMK Silent p.A106A 0.69 TCGA-05-4389-01 8 88886032 88886032 C G DCAF4L2 Missense_Mutation p.R56S 0.27 deleterious(0.01) benign(0.259) TCGA-05-4389-01 8 95521993 95521993 G A KIAA1429 Missense_Mutation p.R1268W 0.06 tolerated(0.06) possibly_damaging(0.72) TCGA-05-4389-01 8 99440859 99440859 C A KCNS2 Missense_Mutation p.Q218K 0.31 tolerated(0.89) benign(0) TCGA-05-4389-01 9 129642401 129642401 G C ZBTB34 Missense_Mutation p.K237N 0.07 deleterious(0) probably_damaging(0.999) TCGA-05-4389-01 9 131262373 131262373 C A ODF2 Missense_Mutation p.Q777K 0.28 tolerated(0.1) benign(0.237) TCGA-05-4389-01 9 135203286 135203286 G C SETX Missense_Mutation p.I1233M 0.06 tolerated(0.1) benign(0.221) TCGA-05-4389-01 9 138837002 138837002 C T UBAC1 Missense_Mutation p.E250K 0.06 tolerated(0.44) benign(0.018) TCGA-05-4389-01 9 34339067 34339067 C G NUDT2 Missense_Mutation p.I10M 0.15 deleterious(0) probably_damaging(0.951) TCGA-05-4389-01 9 35607349 35607349 G C TESK1 Missense_Mutation p.R188P 0.05 tolerated(0.07) benign(0.3) TCGA-05-4389-01 9 84603711 84603711 C T SPATA31D1 5'UTR 0.07 TCGA-05-4389-01 9 8465635 8465635 T A PTPRD Missense_Mutation p.Y1182F 0.25 tolerated(0.7) benign(0.001) TCGA-05-4389-01 9 91660680 91660680 C A SHC3 Missense_Mutation p.Q394H 0.14 tolerated(0.29) benign(0.001) TCGA-05-4389-01 9 95481798 95481798 G A BICD2 Missense_Mutation p.R377W 0.26 deleterious(0.01) possibly_damaging(0.683) TCGA-05-4389-01 9 97555120 97555120 G C C9orf3 Missense_Mutation p.W346C 0.08 deleterious(0) probably_damaging(0.999) TCGA-05-4389-01 9 99581987 99581987 G A ZNF782 Silent p.F106F 0.09 TCGA-05-4389-01 X 101909099 101909099 A C GPRASP1 Silent p.S86S 0.05 TCGA-05-4389-01 X 125298632 125298632 C T DCAF12L2 Missense_Mutation p.E426K 0.04 tolerated(0.33) benign(0.24) TCGA-05-4389-01 X 125685831 125685831 G T DCAF12L1 Missense_Mutation p.P254H 0.21 deleterious(0.01) probably_damaging(0.966) TCGA-05-4389-01 X 149013194 149013194 C A MAGEA8 Missense_Mutation p.L50I 0.54 tolerated(0.23) possibly_damaging(0.686) TCGA-05-4389-01 X 2640679 2640679 G T CD99 Missense_Mutation p.D92Y 0.47 deleterious(0) probably_damaging(0.961) TCGA-05-4389-01 X 32563307 32563307 G T DMD Missense_Mutation p.Q713K 0.43 benign(0.34) TCGA-05-4389-01 X 68382049 68382049 T G PJA1 Missense_Mutation p.M345L 0.38 tolerated(0.68) benign(0.002) TCGA-05-4389-01 X 72667133 72667133 C A CDX4 Missense_Mutation p.P15Q 0.29 deleterious(0.02) possibly_damaging(0.657) TCGA-05-4389-01 X 79283520 79283520 C - TBX22 Frame_Shift_Del p.P299Hfs*27 0.32 TCGA-05-4390-01 10 103919024 103919024 G T NOLC1 Missense_Mutation p.D228Y 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.861) TCGA-05-4390-01 10 104157797 104157797 C T NFKB2 Missense_Mutation p.R241W 0.07 deleterious(0.04) possibly_damaging(0.591) TCGA-05-4390-01 10 106907476 106907476 G A SORCS3 Silent p.G468G 0.19 TCGA-05-4390-01 10 108923816 108923816 C G SORCS1 Missense_Mutation p.E157Q 0.20 tolerated(0.26) possibly_damaging(0.67) TCGA-05-4390-01 10 117704361 117704361 T A ATRNL1 3'UTR 0.41 TCGA-05-4390-01 10 119017345 119017345 G T SLC18A2 Silent p.L311L 0.33 TCGA-05-4390-01 10 119044378 119044378 C A PDZD8 Silent p.V622V 0.21 TCGA-05-4390-01 10 124909093 124909093 C A HMX2 Silent p.P92P 0.21 TCGA-05-4390-01 10 134006275 134006275 T A DPYSL4 Missense_Mutation p.L81Q 0.27 tolerated(0.22) possibly_damaging(0.47) TCGA-05-4390-01 10 134999589 134999589 C T KNDC1 Missense_Mutation p.P246L 0.23 tolerated(0.26) probably_damaging(0.913) TCGA-05-4390-01 10 135438789 135438789 C T FRG2B Silent p.L217L 0.12 TCGA-05-4390-01 10 15103797 15103797 G C OLAH Missense_Mutation p.D133H 0.33 deleterious(0) probably_damaging(0.998) TCGA-05-4390-01 10 17737165 17737165 T A STAM Missense_Mutation p.I218K 0.38 deleterious(0) possibly_damaging(0.555) TCGA-05-4390-01 10 17737166 17737166 A T STAM Silent p.I218I 0.39 TCGA-05-4390-01 10 21158739 21158739 T A NEBL Missense_Mutation p.H171L 0.24 tolerated(0.25) possibly_damaging(0.838) TCGA-05-4390-01 10 21805106 21805106 C A SKIDA1 Missense_Mutation p.R549M 0.26 tolerated(0.09) unknown(0) TCGA-05-4390-01 10 29813491 29813491 C A SVIL Silent p.A832A 0.36 TCGA-05-4390-01 10 31138643 31138643 G T ZNF438 Missense_Mutation p.Q231K 0.34 tolerated(0.57) benign(0.227) TCGA-05-4390-01 10 48428949 48428949 C A GDF10 Missense_Mutation p.A313S 0.50 tolerated(0.49) benign(0.002) TCGA-05-4390-01 10 50958893 50958893 C G OGDHL Missense_Mutation p.M296I 0.12 deleterious(0.01) possibly_damaging(0.835) TCGA-05-4390-01 10 53458690 53458690 G A CSTF2T Missense_Mutation p.S207F 0.45 deleterious(0) benign(0.143) TCGA-05-4390-01 10 69700696 69700696 C A HERC4 Missense_Mutation p.R843I 0.31 deleterious(0) possibly_damaging(0.84) TCGA-05-4390-01 10 72539382 72539382 G A TBATA Missense_Mutation p.P132S 0.13 deleterious(0.04) probably_damaging(1) TCGA-05-4390-01 10 7866336 7866336 G T TAF3 Silent p.G74G 0.28 TCGA-05-4390-01 10 93776187 93776187 A T BTAF1 Nonsense_Mutation p.K1559* 0.20 TCGA-05-4390-01 10 95169426 95169426 C - MYOF Frame_Shift_Del p.P169Qfs*17 0.33 TCGA-05-4390-01 10 96018635 96018635 C A PLCE1 Missense_Mutation p.S1211R 0.19 deleterious(0) possibly_damaging(0.873) TCGA-05-4390-01 11 108183154 108183154 G T ATM Nonsense_Mutation p.E1979* 0.19 TCGA-05-4390-01 11 108205768 108205768 G A ATM Missense_Mutation p.G2695S 0.43 deleterious(0) probably_damaging(1) TCGA-05-4390-01 11 1104231 1104231 C T MUC2 Missense_Mutation p.R2808W 0.19 unknown(0) TCGA-05-4390-01 11 110461533 110461533 C G ARHGAP20 Missense_Mutation p.D382H 0.47 deleterious(0.04) benign(0.327) TCGA-05-4390-01 11 113235676 113235676 G C TTC12 Missense_Mutation p.D646H 0.26 deleterious(0) probably_damaging(0.937) TCGA-05-4390-01 11 114320703 114320703 G T REXO2 3'UTR 0.17 TCGA-05-4390-01 11 119996462 119996462 C A TRIM29 Missense_Mutation p.V424F 0.35 deleterious(0) probably_damaging(0.922) TCGA-05-4390-01 11 124756669 124756669 C A ROBO4 Missense_Mutation p.G829W 0.21 deleterious(0) probably_damaging(0.965) TCGA-05-4390-01 11 125255501 125255501 C A PKNOX2 Silent p.T94T 0.17 TCGA-05-4390-01 11 1269245 1269245 C A MUC5B Missense_Mutation p.P3712Q 0.30 unknown(0) TCGA-05-4390-01 11 15197461 15197461 G T INSC Silent p.L124L 0.50 TCGA-05-4390-01 11 20668432 20668432 C A SLC6A5 Missense_Mutation p.N674K 0.45 tolerated(0.29) benign(0.016) TCGA-05-4390-01 11 20950015 20950015 G T NELL1 Missense_Mutation p.K329N 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-05-4390-01 11 21555993 21555993 C - NELL1 Frame_Shift_Del p.H574Tfs*29 0.27 TCGA-05-4390-01 11 24927594 24927594 G T LUZP2 Nonsense_Mutation p.E152* 0.34 TCGA-05-4390-01 11 33094290 33094290 T A TCP11L1 3'UTR 0.66 TCGA-05-4390-01 11 36597180 36597180 C A RAG1 Silent p.R776R 0.20 TCGA-05-4390-01 11 36614948 36614948 A G RAG2 Silent p.S257S 0.20 TCGA-05-4390-01 11 40136851 40136851 T C LRRC4C Missense_Mutation p.N331S 0.46 tolerated(0.1) benign(0) TCGA-05-4390-01 11 4471398 4471398 C A OR52K2 Missense_Mutation p.L277I 0.46 deleterious(0.04) possibly_damaging(0.787) TCGA-05-4390-01 11 4843368 4843368 C A OR51F2 Silent p.A251A 0.27 TCGA-05-4390-01 11 5142424 5142424 C A OR52A4 RNA 0.26 TCGA-05-4390-01 11 5153746 5153746 C T OR52A5 Missense_Mutation p.G43R 0.37 deleterious(0.01) probably_damaging(1) TCGA-05-4390-01 11 5444219 5444219 T A OR51Q1 Silent p.T263T 0.50 TCGA-05-4390-01 11 55038260 55038260 C A TRIM48 3'UTR 0.08 TCGA-05-4390-01 11 55065653 55065653 C - TRIM51HP RNA 0.20 TCGA-05-4390-01 11 55999938 55999938 C - OR5T2 Frame_Shift_Del p.V242Wfs*10 0.29 TCGA-05-4390-01 11 58206722 58206722 C A OR5B12 Missense_Mutation p.K301N 0.40 deleterious_low_confidence(0.02) benign(0.141) TCGA-05-4390-01 11 6048764 6048764 C A OR56A1 Missense_Mutation p.Q57H 0.54 tolerated(0.54) benign(0.078) TCGA-05-4390-01 11 61183865 61183865 T C CPSF7 Missense_Mutation p.N269S 0.40 tolerated(0.88) benign(0.003) TCGA-05-4390-01 11 64366303 64366303 G A SLC22A12 Silent p.E326E 0.18 TCGA-05-4390-01 11 64390268 64390268 G T NRXN2 Missense_Mutation p.T1377K 0.19 tolerated(0.06) benign(0.389) TCGA-05-4390-01 11 66472300 66472300 G T SPTBN2 Missense_Mutation p.T816K 0.41 tolerated(0.14) benign(0.023) TCGA-05-4390-01 11 67793485 67793485 G T ALDH3B1 Missense_Mutation p.K373N 0.29 tolerated(0.68) benign(0.003) TCGA-05-4390-01 11 7022736 7022736 C A ZNF214 Nonsense_Mutation p.E60* 0.21 TCGA-05-4390-01 11 7111241 7111241 G T RBMXL2 Missense_Mutation p.G297V 0.55 deleterious(0.01) benign(0.001) TCGA-05-4390-01 11 7111242 7111242 G T RBMXL2 Silent p.G297G 0.57 TCGA-05-4390-01 11 71146589 71146589 C A DHCR7 Silent p.L420L 0.30 TCGA-05-4390-01 11 71293805 71293805 C A KRTAP5-11 Missense_Mutation p.G27C 0.42 tolerated_low_confidence(0.06) unknown(0) TCGA-05-4390-01 11 7335047 7335047 G T SYT9 Missense_Mutation p.V307L 0.45 deleterious(0.01) possibly_damaging(0.521) TCGA-05-4390-01 11 7818288 7818288 C A OR5P2 Missense_Mutation p.A68S 0.48 tolerated(0.06) benign(0.002) TCGA-05-4390-01 11 82698724 82698724 T C RAB30 Missense_Mutation p.Y89C 0.40 deleterious(0) probably_damaging(0.999) TCGA-05-4390-01 11 92086050 92086050 C A FAT3 Missense_Mutation p.R258S 0.45 probably_damaging(0.999) TCGA-05-4390-01 12 100042084 100042084 C A FAM71C Silent p.P44P 0.11 TCGA-05-4390-01 12 100551393 100551393 C A AC010203.1 5'Flank 0.44 TCGA-05-4390-01 12 101689353 101689353 C A UTP20 Silent p.L449L 0.19 TCGA-05-4390-01 12 102131607 102131607 C G SYCP3 Missense_Mutation p.S36T 0.05 deleterious(0.03) benign(0.1) TCGA-05-4390-01 12 104480726 104480726 C A HCFC2 Missense_Mutation p.Q389K 0.04 deleterious(0) benign(0.027) TCGA-05-4390-01 12 108010922 108010922 C A BTBD11 Missense_Mutation p.N686K 0.26 tolerated(0.5) probably_damaging(0.962) TCGA-05-4390-01 12 111729244 111729244 G A CUX2 Silent p.A108A 0.10 TCGA-05-4390-01 12 112516017 112516017 C A NAA25 Missense_Mutation p.L213F 0.40 deleterious(0.01) possibly_damaging(0.526) TCGA-05-4390-01 12 112681285 112681285 C A HECTD4 Missense_Mutation p.R1464S 0.43 possibly_damaging(0.828) TCGA-05-4390-01 12 117681107 117681107 G T NOS1 Missense_Mutation p.T1020K 0.47 tolerated(0.61) benign(0.242) TCGA-05-4390-01 12 122018776 122018776 G A KDM2B Missense_Mutation p.P14L 0.46 deleterious_low_confidence(0) benign(0) TCGA-05-4390-01 12 122018777 122018777 G A KDM2B Missense_Mutation p.P14S 0.47 deleterious_low_confidence(0) benign(0) TCGA-05-4390-01 12 13724849 13724849 G T GRIN2B Missense_Mutation p.P687H 0.26 deleterious(0) probably_damaging(1) TCGA-05-4390-01 12 1895226 1895226 G T ADIPOR2 Missense_Mutation p.E383D 0.28 tolerated(1) benign(0.002) TCGA-05-4390-01 12 2016649 2016649 C T CACNA2D4 Nonsense_Mutation p.W246* 0.54 TCGA-05-4390-01 12 21032388 21032388 C G SLCO1B3 Missense_Mutation p.T385R 0.15 tolerated(0.11) possibly_damaging(0.793) TCGA-05-4390-01 12 21229503 21229503 G T SLCO1B7 Missense_Mutation p.G575V 0.38 tolerated(0.16) possibly_damaging(0.813) TCGA-05-4390-01 12 21919111 21919111 C T KCNJ8 Missense_Mutation p.R274H 0.22 tolerated(0.27) benign(0.342) TCGA-05-4390-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.44 deleterious(0) possibly_damaging(0.479) TCGA-05-4390-01 12 29669326 29669326 G T TMTC1 Missense_Mutation p.R755S 0.29 deleterious(0.02) possibly_damaging(0.895) TCGA-05-4390-01 12 29904683 29904683 C T TMTC1 Nonsense_Mutation p.W285* 0.27 TCGA-05-4390-01 12 30816432 30816432 G C IPO8 Missense_Mutation p.Q529E 0.08 deleterious(0.03) benign(0.443) TCGA-05-4390-01 12 31576610 31576610 C A DENND5B Splice_Site p.X798_splice 0.45 TCGA-05-4390-01 12 31944715 31944715 C A H3F3C Missense_Mutation p.R129L 0.49 deleterious_low_confidence(0.02) benign(0.018) TCGA-05-4390-01 12 39967542 39967542 G T ABCD2 Missense_Mutation p.S660Y 0.44 deleterious(0) probably_damaging(0.987) TCGA-05-4390-01 12 41337488 41337488 G T CNTN1 Missense_Mutation p.R490I 0.26 tolerated(0.34) possibly_damaging(0.836) TCGA-05-4390-01 12 41410654 41410654 G T CNTN1 Missense_Mutation p.K785N 0.25 deleterious(0.01) probably_damaging(0.975) TCGA-05-4390-01 12 4479725 4479725 G T FGF23 Missense_Mutation p.S180R 0.28 deleterious(0.04) probably_damaging(0.999) TCGA-05-4390-01 12 45429822 45429822 G T DBX2 Missense_Mutation p.A160E 0.47 deleterious(0.04) benign(0.132) TCGA-05-4390-01 12 52778922 52778922 G A KRT84 Missense_Mutation p.L150F 0.06 deleterious(0) probably_damaging(0.997) TCGA-05-4390-01 12 52908997 52908997 C A KRT5 Missense_Mutation p.G501V 0.21 deleterious(0.03) unknown(0) TCGA-05-4390-01 12 53514665 53514665 C A SOAT2 Silent p.R379R 0.40 TCGA-05-4390-01 12 54757386 54757386 G T GPR84 Missense_Mutation p.L84M 0.31 deleterious(0.03) probably_damaging(0.997) TCGA-05-4390-01 12 56495883 56495883 G T ERBB3 3'UTR 0.53 TCGA-05-4390-01 12 56814763 56814763 T A TIMELESS Missense_Mutation p.Q1008H 0.25 tolerated(0.26) benign(0.008) TCGA-05-4390-01 12 6702648 6702648 G C CHD4 Missense_Mutation p.I816M 0.36 deleterious(0) possibly_damaging(0.904) TCGA-05-4390-01 12 70974892 70974892 G A PTPRB Silent p.G834G 0.43 TCGA-05-4390-01 12 70983910 70983910 G T PTPRB Silent p.I628I 0.35 TCGA-05-4390-01 12 78579461 78579461 G T NAV3 Missense_Mutation p.G1903C 0.29 deleterious(0.03) probably_damaging(0.944) TCGA-05-4390-01 12 81102680 81102680 G T MYF6 Missense_Mutation p.D224Y 0.30 deleterious(0) probably_damaging(0.993) TCGA-05-4390-01 12 91502248 91502248 C A LUM Missense_Mutation p.R170L 0.20 tolerated(0.2) benign(0) TCGA-05-4390-01 12 9997030 9997030 G T KLRF1 Nonsense_Mutation p.G202* 0.23 TCGA-05-4390-01 13 115090570 115090570 A C CHAMP1 Missense_Mutation p.E418A 0.05 deleterious(0) possibly_damaging(0.848) TCGA-05-4390-01 13 25416251 25416251 G T RNF17 Missense_Mutation p.S852I 0.48 deleterious(0) probably_damaging(0.944) TCGA-05-4390-01 13 25671243 25671243 G A PABPC3 Missense_Mutation p.D303N 0.40 deleterious(0) probably_damaging(0.995) TCGA-05-4390-01 13 27255238 27255238 A G WASF3 Missense_Mutation p.N255S 0.17 tolerated(0.18) benign(0.005) TCGA-05-4390-01 13 27333098 27333098 G T GPR12 Silent p.P289P 0.50 TCGA-05-4390-01 13 28964084 28964084 C A FLT1 Missense_Mutation p.K606N 0.25 tolerated(0.34) possibly_damaging(0.9) TCGA-05-4390-01 13 32745165 32745165 G A FRY Missense_Mutation p.D637N 0.46 deleterious(0) probably_damaging(0.978) TCGA-05-4390-01 13 33635064 33635064 G A KL Silent p.L616L 0.17 TCGA-05-4390-01 13 36686012 36686012 C - DCLK1 Frame_Shift_Del p.K240Nfs*3 0.17 TCGA-05-4390-01 13 42869861 42869861 G T AKAP11 Missense_Mutation p.D67Y 0.43 deleterious(0.01) probably_damaging(0.978) TCGA-05-4390-01 13 46549613 46549616 CTCT - ZC3H13 Frame_Shift_Del p.E757Gfs*107 0.49 TCGA-05-4390-01 13 46559672 46559672 C T ZC3H13 Missense_Mutation p.D494N 0.49 probably_damaging(0.981) TCGA-05-4390-01 13 58207805 58207805 G T PCDH17 Silent p.R375R 0.21 TCGA-05-4390-01 13 67800609 67800609 C G PCDH9 Missense_Mutation p.R655P 0.12 deleterious(0.01) possibly_damaging(0.841) TCGA-05-4390-01 13 70456619 70456619 T A KLHL1 Silent p.I341I 0.13 TCGA-05-4390-01 13 84455264 84455264 G A SLITRK1 Silent p.L127L 0.15 TCGA-05-4390-01 13 94482692 94482704 ACGTGCCCCGGAA - GPC6 Frame_Shift_Del p.V203* 0.21 TCGA-05-4390-01 13 98658478 98658478 A T IPO5 Missense_Mutation p.Y549F 0.20 deleterious(0.03) possibly_damaging(0.894) TCGA-05-4390-01 13 99092992 99092992 C G FARP1 Missense_Mutation p.L900V 0.24 tolerated(0.1) possibly_damaging(0.597) TCGA-05-4390-01 14 106805449 106805449 G A IGHV4-31 Silent p.S38S 0.27 TCGA-05-4390-01 14 20020002 20020002 C A POTEM Missense_Mutation p.R73S 0.21 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-05-4390-01 14 20612049 20612049 A T OR4N5 Missense_Mutation p.D52V 0.23 deleterious(0) probably_damaging(0.999) TCGA-05-4390-01 14 20943064 20943064 G T PNP Missense_Mutation p.G140C 0.25 deleterious(0.01) probably_damaging(1) TCGA-05-4390-01 14 22409647 22409647 C A TRAV9-2 Missense_Mutation p.A46D 0.47 deleterious(0.01) benign(0.132) TCGA-05-4390-01 14 51087337 51087337 A T ATL1 Nonsense_Mutation p.K295* 0.07 TCGA-05-4390-01 14 55243227 55243227 C G SAMD4A Silent p.S671S 0.17 TCGA-05-4390-01 14 59112601 59112601 G A DACT1 Silent p.S420S 0.09 TCGA-05-4390-01 14 61915900 61915900 A G PRKCH Missense_Mutation p.H211R 0.24 deleterious(0) probably_damaging(0.932) TCGA-05-4390-01 14 62567160 62567160 C - SYT16 Frame_Shift_Del p.R559Vfs*33 0.56 TCGA-05-4390-01 14 79181120 79181120 G T NRXN3 Missense_Mutation p.R188M 0.24 tolerated(0.06) probably_damaging(0.935) TCGA-05-4390-01 14 94568239 94568239 A T IFI27L1 Silent p.A47A 0.60 TCGA-05-4390-01 14 95057199 95057199 G T SERPINA5 Missense_Mutation p.G335V 0.62 deleterious(0) probably_damaging(0.946) TCGA-05-4390-01 14 96178706 96178706 G A TCL1A Missense_Mutation p.L50F 0.10 deleterious(0.03) benign(0.41) TCGA-05-4390-01 15 22332708 22332708 C A RP11-69H14.6 RNA 0.10 TCGA-05-4390-01 15 25420006 25420006 C A SNORD115-3 5'Flank 0.35 TCGA-05-4390-01 15 34064146 34064146 C A RYR3 Missense_Mutation p.L2948M 0.50 possibly_damaging(0.713) TCGA-05-4390-01 15 34530465 34530465 T A SLC12A6 Missense_Mutation p.M924L 0.31 tolerated(0.19) probably_damaging(0.972) TCGA-05-4390-01 15 42168805 42168805 T A SPTBN5 Missense_Mutation p.R1298W 0.19 probably_damaging(0.995) TCGA-05-4390-01 15 43771675 43771675 C T TP53BP1 Silent p.Q236Q 0.43 TCGA-05-4390-01 15 43771676 43771676 T A TP53BP1 Missense_Mutation p.Q236L 0.43 tolerated(0.13) benign(0.004) TCGA-05-4390-01 15 45047534 45047534 A G TRIM69 Missense_Mutation p.K148R 0.26 tolerated(0.13) benign(0.002) TCGA-05-4390-01 15 48427124 48427124 C G SLC24A5 Missense_Mutation p.A178G 0.30 tolerated(0.09) possibly_damaging(0.629) TCGA-05-4390-01 15 51397328 51397328 A G TNFAIP8L3 Missense_Mutation p.C16R 0.41 deleterious_low_confidence(0.01) benign(0.099) TCGA-05-4390-01 15 54817797 54817797 T C UNC13C Silent p.S1836S 0.31 TCGA-05-4390-01 15 62160902 62160902 G A VPS13C Missense_Mutation p.R3607C 0.34 deleterious(0) probably_damaging(1) TCGA-05-4390-01 15 66639603 66639603 C A TIPIN Intron 0.37 TCGA-05-4390-01 15 66797595 66797595 G C ZWILCH 5'UTR 0.49 TCGA-05-4390-01 15 66811350 66811350 G T ZWILCH Nonsense_Mutation p.G152* 0.18 TCGA-05-4390-01 15 68657091 68657091 C A ITGA11 Missense_Mutation p.R104L 0.17 deleterious(0) probably_damaging(1) TCGA-05-4390-01 15 72190736 72190736 G A MYO9A Missense_Mutation p.R1370W 0.24 deleterious_low_confidence(0) benign(0.024) TCGA-05-4390-01 16 15818582 15818582 G T MYH11 Missense_Mutation p.N1353K 0.27 possibly_damaging(0.542) TCGA-05-4390-01 16 19873217 19873217 G C GPRC5B Missense_Mutation p.P370R 0.31 deleterious(0) probably_damaging(1) TCGA-05-4390-01 16 20563612 20563612 C A ACSM2B Missense_Mutation p.G250C 0.27 deleterious(0.01) probably_damaging(0.964) TCGA-05-4390-01 16 23540900 23540900 C A EARS2 Missense_Mutation p.W425C 0.18 deleterious(0) probably_damaging(1) TCGA-05-4390-01 16 23637683 23637683 G - PALB2 Frame_Shift_Del p.M875Cfs*14 0.09 TCGA-05-4390-01 16 27523148 27523148 C G GTF3C1 Missense_Mutation p.E350Q 0.37 deleterious(0.01) possibly_damaging(0.804) TCGA-05-4390-01 16 31230652 31230652 G T TRIM72 Missense_Mutation p.G177C 0.36 deleterious(0.01) probably_damaging(0.936) TCGA-05-4390-01 16 32893905 32893905 G C RP11-989E6.3 5'Flank 0.10 TCGA-05-4390-01 16 48248819 48248819 G T ABCC11 Silent p.S407S 0.35 TCGA-05-4390-01 16 49670060 49670060 C G ZNF423 Missense_Mutation p.E1001D 0.17 tolerated(0.11) possibly_damaging(0.667) TCGA-05-4390-01 16 53967990 53967990 C T FTO Missense_Mutation p.R445C 0.16 deleterious(0) probably_damaging(1) TCGA-05-4390-01 16 55519237 55519237 G C MMP2 Missense_Mutation p.G186R 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-05-4390-01 16 57111715 57111715 G T NLRC5 Splice_Site p.X1668_splice 0.44 TCGA-05-4390-01 16 66998348 66998348 G A CES3 Missense_Mutation p.G217R 0.19 deleterious(0.02) possibly_damaging(0.864) TCGA-05-4390-01 16 705382 705382 C T WDR90 Silent p.D544D 0.22 TCGA-05-4390-01 16 77317892 77317892 G T ADAMTS18 Nonsense_Mutation p.Y1209* 0.21 TCGA-05-4390-01 17 10397671 10397671 C T MYH1 Silent p.A1889A 0.33 TCGA-05-4390-01 17 10402323 10402323 C - MYH1 Frame_Shift_Del p.E1318Nfs*2 0.25 TCGA-05-4390-01 17 11837221 11837221 C T DNAH9 Silent p.L4108L 0.15 TCGA-05-4390-01 17 12656400 12656400 C A MYOCD Missense_Mutation p.P599T 0.24 tolerated(0.17) benign(0.004) TCGA-05-4390-01 17 19480964 19480964 G T SLC47A1 3'UTR 0.50 TCGA-05-4390-01 17 26883184 26883184 C A PIGS Missense_Mutation p.R394L 0.23 deleterious(0) possibly_damaging(0.544) TCGA-05-4390-01 17 27948283 27948283 C G CORO6 Missense_Mutation p.A53P 0.20 deleterious(0) possibly_damaging(0.907) TCGA-05-4390-01 17 3182152 3182152 T A OR3A2 Silent p.L26L 0.29 TCGA-05-4390-01 17 33520262 33520262 C A SLC35G3 3'UTR 0.27 TCGA-05-4390-01 17 33585721 33585721 G T SLFN5 Missense_Mutation p.R4S 0.20 tolerated(0.54) benign(0.004) TCGA-05-4390-01 17 38955966 38955966 G A KRT28 Silent p.S60S 0.60 TCGA-05-4390-01 17 40962758 40962758 C - BECN1 3'UTR 0.08 TCGA-05-4390-01 17 42232034 42232034 T A C17orf53 Splice_Site p.X521_splice 0.15 TCGA-05-4390-01 17 42274678 42274678 T C ATXN7L3 Missense_Mutation p.S92G 0.16 tolerated(0.24) possibly_damaging(0.511) TCGA-05-4390-01 17 43321390 43321390 C T FMNL1 Missense_Mutation p.P816S 0.06 deleterious(0.02) probably_damaging(0.966) TCGA-05-4390-01 17 46622233 46622233 C T HOXB2 Missense_Mutation p.S14N 0.16 deleterious(0) probably_damaging(0.997) TCGA-05-4390-01 17 47785174 47785174 C A SLC35B1 Missense_Mutation p.V8L 0.08 tolerated(0.65) benign(0) TCGA-05-4390-01 17 59760697 59760697 G A BRIP1 Missense_Mutation p.S1237F 0.22 deleterious_low_confidence(0) possibly_damaging(0.66) TCGA-05-4390-01 17 60348783 60348783 C G TBC1D3P2 RNA 0.21 TCGA-05-4390-01 17 6690699 6690699 G T FBXO39 Silent p.L427L 0.20 TCGA-05-4390-01 17 7246801 7246801 C G ACAP1 Missense_Mutation p.Q150E 0.18 tolerated(0.06) benign(0.05) TCGA-05-4390-01 17 7330846 7330846 G T C17orf74 3'UTR 0.21 TCGA-05-4390-01 17 7638002 7638002 T C DNAH2 Silent p.F318F 0.24 TCGA-05-4390-01 17 76831480 76831480 G A USP36 Silent p.R119R 0.44 TCGA-05-4390-01 18 13030600 13030600 A T CEP192 Missense_Mutation p.R509S 0.10 tolerated(0.1) possibly_damaging(0.549) TCGA-05-4390-01 18 13612659 13612659 G T LDLRAD4 Intron 0.25 TCGA-05-4390-01 18 13645402 13645402 A C LDLRAD4 Missense_Mutation p.M223L 0.08 tolerated_low_confidence(0.64) benign(0) TCGA-05-4390-01 18 13731472 13731484 TAGTGTTGGTTCA - RNMT Splice_Site 0.58 TCGA-05-4390-01 18 21508618 21508618 A C LAMA3 Silent p.G2775G 0.11 TCGA-05-4390-01 18 22805191 22805191 C A ZNF521 Missense_Mutation p.M897I 0.19 tolerated(0.09) probably_damaging(0.968) TCGA-05-4390-01 18 29099836 29099836 G T DSG2 Missense_Mutation p.W51L 0.69 deleterious(0) probably_damaging(0.999) TCGA-05-4390-01 18 31323007 31323007 G T ASXL3 Silent p.R1065R 0.14 TCGA-05-4390-01 18 33552791 33552791 G - C18orf21 Intron 0.08 TCGA-05-4390-01 18 43247835 43247835 C A SLC14A2 Silent p.L585L 0.74 TCGA-05-4390-01 18 47108730 47108730 A T LIPG Splice_Site p.X346_splice 0.62 TCGA-05-4390-01 18 47455928 47455928 C G MYO5B Missense_Mutation p.G682R 0.64 deleterious(0) probably_damaging(1) TCGA-05-4390-01 18 48256146 48256146 C T MAPK4 Silent p.G562G 0.60 TCGA-05-4390-01 18 48256147 48256147 G C MAPK4 Missense_Mutation p.D563H 0.60 deleterious_low_confidence(0.01) possibly_damaging(0.85) TCGA-05-4390-01 18 57103004 57103004 A C CCBE1 3'UTR 0.77 TCGA-05-4390-01 18 59195340 59195340 C A CDH20 Silent p.P386P 0.11 TCGA-05-4390-01 18 61460397 61460397 A T SERPINB7 Silent p.S74S 0.07 TCGA-05-4390-01 18 7008579 7008579 T A LAMA1 Nonsense_Mutation p.R1344* 0.17 TCGA-05-4390-01 18 7023336 7023336 C A LAMA1 Missense_Mutation p.G843V 0.21 deleterious(0) probably_damaging(0.999) TCGA-05-4390-01 18 70417782 70417782 G C NETO1 Missense_Mutation p.I352M 0.79 tolerated(0.07) possibly_damaging(0.823) TCGA-05-4390-01 19 12963015 12963015 C A MAST1 Silent p.P321P 0.64 TCGA-05-4390-01 19 20235986 20235986 G T CTC-260E6.2 RNA 0.71 TCGA-05-4390-01 19 20808333 20808333 C A ZNF626 Missense_Mutation p.C117F 0.61 deleterious(0.03) benign(0.276) TCGA-05-4390-01 19 21909726 21909726 C - ZNF100 Frame_Shift_Del p.G463Afs*10 0.30 TCGA-05-4390-01 19 336131 336131 G T MIER2 Missense_Mutation p.L18I 0.45 tolerated_low_confidence(0.12) possibly_damaging(0.676) TCGA-05-4390-01 19 36357499 36357499 A T KIRREL2 3'UTR 0.38 TCGA-05-4390-01 19 38126960 38126960 C A ZFP30 Missense_Mutation p.G161V 0.32 deleterious(0.03) benign(0.001) TCGA-05-4390-01 19 38995661 38995661 G A RYR1 Silent p.K2750K 0.13 TCGA-05-4390-01 19 40710446 40710446 C T MAP3K10 Silent p.I306I 0.38 TCGA-05-4390-01 19 41812558 41812558 C T HNRNPUL1 3'UTR 0.44 TCGA-05-4390-01 19 43348611 43348611 G A PSG10P RNA 0.28 TCGA-05-4390-01 19 43763045 43763045 C A PSG9 Missense_Mutation p.G318C 0.37 deleterious(0) probably_damaging(0.976) TCGA-05-4390-01 19 44171830 44171830 C A PLAUR Silent p.L23L 0.28 TCGA-05-4390-01 19 44570525 44570525 G T ZNF223 Nonsense_Mutation p.G182* 0.27 TCGA-05-4390-01 19 44662182 44662182 C A ZNF234 Missense_Mutation p.H671Q 0.35 tolerated(1) benign(0.016) TCGA-05-4390-01 19 44739572 44739572 G T ZNF227 Missense_Mutation p.G330V 0.33 deleterious(0.01) probably_damaging(1) TCGA-05-4390-01 19 46526132 46526132 G T PGLYRP1 Missense_Mutation p.L50M 0.29 tolerated(0.72) possibly_damaging(0.821) TCGA-05-4390-01 19 48956135 48956135 C T GRWD1 Silent p.P398P 0.46 TCGA-05-4390-01 19 49376608 49376608 G T PPP1R15A Nonsense_Mutation p.G40* 0.33 TCGA-05-4390-01 19 50473649 50473649 G C SIGLEC16 RNA 0.29 TCGA-05-4390-01 19 51323520 51323520 G C KLK1 Missense_Mutation p.P129R 0.32 tolerated(0.12) probably_damaging(0.989) TCGA-05-4390-01 19 52023450 52023450 G T SIGLEC6 Silent p.P416P 0.32 TCGA-05-4390-01 19 52031048 52031048 C A SIGLEC6 Missense_Mutation p.V381L 0.15 tolerated(0.12) benign(0.007) TCGA-05-4390-01 19 53762292 53762292 C G VN1R2 Missense_Mutation p.L222V 0.38 tolerated(0.1) possibly_damaging(0.863) TCGA-05-4390-01 19 54515480 54515480 C G CACNG6 3'UTR 0.40 TCGA-05-4390-01 19 54783311 54783311 C T LILRB2 Missense_Mutation p.V183M 0.09 tolerated(0.06) possibly_damaging(0.776) TCGA-05-4390-01 19 55014160 55014160 T C LAIR2 Missense_Mutation p.L9P 0.31 deleterious(0) probably_damaging(1) TCGA-05-4390-01 19 55340893 55340893 C A KIR3DL1 Missense_Mutation p.L360I 0.29 tolerated(0.45) benign(0.145) TCGA-05-4390-01 19 55753604 55753604 C A PPP6R1 Nonsense_Mutation p.E259* 0.34 TCGA-05-4390-01 19 56410252 56410252 G T NLRP13 Silent p.A947A 0.38 TCGA-05-4390-01 19 56424608 56424608 C T NLRP13 Nonsense_Mutation p.W192* 0.27 TCGA-05-4390-01 19 56424611 56424611 G T NLRP13 Missense_Mutation p.T191K 0.27 tolerated(0.23) benign(0) TCGA-05-4390-01 19 56459432 56459432 G A NLRP8 Missense_Mutation p.R55Q 0.24 tolerated(0.32) benign(0.01) TCGA-05-4390-01 19 56539728 56539728 T G NLRP5 Missense_Mutation p.V710G 0.37 deleterious(0) probably_damaging(0.937) TCGA-05-4390-01 19 56544988 56544988 A T NLRP5 Missense_Mutation p.N843I 0.41 deleterious(0) benign(0.114) TCGA-05-4390-01 19 57330040 57330040 G A PEG3 Missense_Mutation p.L234F 0.35 tolerated(0.12) benign(0.091) TCGA-05-4390-01 19 58849788 58849788 G T ZSCAN22 Missense_Mutation p.G191V 0.29 tolerated(0.07) benign(0.058) TCGA-05-4390-01 19 6380419 6380419 T G GTF2F1 Missense_Mutation p.K476T 0.05 deleterious(0) probably_damaging(0.998) TCGA-05-4390-01 19 8656874 8656875 - G ADAMTS10 Frame_Shift_Ins p.S568Vfs*4 0.46 TCGA-05-4390-01 19 8656875 8656875 A C ADAMTS10 Missense_Mutation p.V567G 0.45 deleterious(0) possibly_damaging(0.828) TCGA-05-4390-01 19 881589 881589 C A MED16 Missense_Mutation p.A371S 0.71 tolerated(0.25) possibly_damaging(0.694) TCGA-05-4390-01 1 101185341 101185341 C T VCAM1 5'UTR 0.56 TCGA-05-4390-01 1 109315285 109315285 A T STXBP3 Splice_Site p.X147_splice 0.23 TCGA-05-4390-01 1 110087022 110087022 G A GPR61 3'UTR 0.43 TCGA-05-4390-01 1 116287460 116287460 G T CASQ2 Missense_Mutation p.A103D 0.43 deleterious(0) probably_damaging(0.999) TCGA-05-4390-01 1 117605061 117605061 G T TTF2 Missense_Mutation p.G62C 0.06 tolerated(0.1) probably_damaging(0.993) TCGA-05-4390-01 1 118550797 118550797 C T SPAG17 Missense_Mutation p.R1486K 0.27 tolerated(0.36) possibly_damaging(0.646) TCGA-05-4390-01 1 120301895 120301895 T A HMGCS2 Silent p.G232G 0.61 TCGA-05-4390-01 1 12785996 12785996 G A AADACL3 3'Flank 0.48 TCGA-05-4390-01 1 147092304 147092304 C A BCL9 Silent p.P781P 0.32 TCGA-05-4390-01 1 150483881 150483881 G T ECM1 Intron 0.40 TCGA-05-4390-01 1 150483882 150483882 G T ECM1 Intron 0.40 TCGA-05-4390-01 1 152005093 152005093 C T S100A11 3'UTR 0.26 TCGA-05-4390-01 1 152278587 152278587 A C FLG Missense_Mutation p.D2925E 0.08 benign(0.095) TCGA-05-4390-01 1 152279170 152279170 G T FLG Missense_Mutation p.T2731K 0.23 benign(0.003) TCGA-05-4390-01 1 152384671 152384671 C G CRNN Missense_Mutation p.E13D 0.03 tolerated(0.17) benign(0.056) TCGA-05-4390-01 1 153085168 153085168 T C SPRR2F Silent p.P14P 0.08 TCGA-05-4390-01 1 155220391 155220391 G A FAM189B Missense_Mutation p.P396S 0.37 tolerated(0.19) benign(0.09) TCGA-05-4390-01 1 156622549 156622549 G T BCAN Missense_Mutation p.G603C 0.20 deleterious(0.01) possibly_damaging(0.866) TCGA-05-4390-01 1 158607998 158607998 C G SPTA1 Missense_Mutation p.D1672H 0.23 tolerated(0.09) benign(0.038) TCGA-05-4390-01 1 158644338 158644338 G A SPTA1 Nonsense_Mutation p.Q414* 0.04 TCGA-05-4390-01 1 158644339 158644339 C A SPTA1 Missense_Mutation p.Q413H 0.04 deleterious(0) possibly_damaging(0.866) TCGA-05-4390-01 1 158736290 158736290 G T OR6N1 Missense_Mutation p.H61Q 0.28 tolerated(0.27) benign(0.002) TCGA-05-4390-01 1 159558097 159558097 A T APCS Missense_Mutation p.S91C 0.51 deleterious(0.03) probably_damaging(0.996) TCGA-05-4390-01 1 160171205 160171205 C A CASQ1 3'UTR 0.21 TCGA-05-4390-01 1 160390211 160390211 G T VANGL2 Missense_Mutation p.V271L 0.35 deleterious(0.03) benign(0.023) TCGA-05-4390-01 1 160654604 160654604 T A CD48 Intron 0.28 TCGA-05-4390-01 1 160709145 160709145 A T SLAMF7 Silent p.T18T 0.42 TCGA-05-4390-01 1 161953809 161953809 C A OLFML2B Missense_Mutation p.D637Y 0.18 deleterious(0) probably_damaging(0.98) TCGA-05-4390-01 1 165876981 165876981 G T UCK2 Missense_Mutation p.R236L 0.39 tolerated(0.2) possibly_damaging(0.469) TCGA-05-4390-01 1 165876982 165876982 G T UCK2 Silent p.R236R 0.38 TCGA-05-4390-01 1 17330859 17330859 C A ATP13A2 Missense_Mutation p.W175C 0.18 deleterious(0) probably_damaging(1) TCGA-05-4390-01 1 175375584 175375584 C T TNR Silent p.Q89Q 0.48 TCGA-05-4390-01 1 176525976 176525976 C - PAPPA2 Frame_Shift_Del p.T174Pfs*7 0.27 TCGA-05-4390-01 1 176903321 176903321 G A ASTN1 Nonsense_Mutation p.R880* 0.06 TCGA-05-4390-01 1 181727186 181727186 C T CACNA1E Missense_Mutation p.P1478L 0.21 deleterious(0) possibly_damaging(0.726) TCGA-05-4390-01 1 186643683 186643683 T G PTGS2 Missense_Mutation p.E539D 0.43 tolerated(0.29) benign(0.001) TCGA-05-4390-01 1 190067374 190067374 G T BRINP3 Missense_Mutation p.T692N 0.23 deleterious(0) probably_damaging(0.994) TCGA-05-4390-01 1 197169211 197169211 T A ZBTB41 Silent p.V131V 0.35 TCGA-05-4390-01 1 200587437 200587437 C A KIF14 Missense_Mutation p.D139Y 0.35 deleterious(0) possibly_damaging(0.831) TCGA-05-4390-01 1 201061212 201061212 G C CACNA1S Missense_Mutation p.N143K 0.27 deleterious(0.04) benign(0.433) TCGA-05-4390-01 1 209935992 209935992 C A TRAF3IP3 Missense_Mutation p.P160T 0.44 tolerated(0.49) benign(0.047) TCGA-05-4390-01 1 211192199 211192199 C A KCNH1 Missense_Mutation p.A320S 0.33 tolerated(0.28) benign(0.001) TCGA-05-4390-01 1 216262470 216262470 C T USH2A Silent p.V1590V 0.19 TCGA-05-4390-01 1 216465702 216465702 C A USH2A Missense_Mutation p.C552F 0.24 probably_damaging(1) TCGA-05-4390-01 1 216538348 216538348 C - USH2A Frame_Shift_Del p.G244Vfs*13 0.27 TCGA-05-4390-01 1 228345729 228345729 C T GJC2 Silent p.P90P 0.38 TCGA-05-4390-01 1 228362629 228362629 G C IBA57 Missense_Mutation p.R193P 0.27 tolerated(0.28) possibly_damaging(0.506) TCGA-05-4390-01 1 238053432 238053432 C A ZP4 Missense_Mutation p.G74C 0.20 deleterious(0) probably_damaging(0.998) TCGA-05-4390-01 1 247614730 247614730 C A OR2B11 Silent p.V185V 0.33 TCGA-05-4390-01 1 248059435 248059435 G T OR2W3 Missense_Mutation p.A183S 0.35 deleterious(0.05) possibly_damaging(0.827) TCGA-05-4390-01 1 248128993 248128993 G T OR2AK2 Missense_Mutation p.L120F 0.21 deleterious(0.01) possibly_damaging(0.771) TCGA-05-4390-01 1 248129570 248129570 A T OR2AK2 Missense_Mutation p.T313S 0.43 tolerated(0.16) benign(0.028) TCGA-05-4390-01 1 248202292 248202292 C G OR2L2 Missense_Mutation p.S241R 0.42 deleterious(0) probably_damaging(0.954) TCGA-05-4390-01 1 27117369 27117369 G T PIGV Silent p.L21L 0.63 TCGA-05-4390-01 1 28864429 28864429 G T RCC1 Missense_Mutation p.M423I 0.48 tolerated(0.11) benign(0) TCGA-05-4390-01 1 34112407 34112407 G A CSMD2 Missense_Mutation p.L1499F 0.47 deleterious(0) probably_damaging(1) TCGA-05-4390-01 1 34112410 34112410 A C CSMD2 Missense_Mutation p.F1498V 0.47 deleterious(0.02) probably_damaging(1) TCGA-05-4390-01 1 35320621 35320621 C A SMIM12 3'UTR 0.24 TCGA-05-4390-01 1 41461722 41461722 G T CTPS1 Missense_Mutation p.W285L 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-05-4390-01 1 42047134 42047134 C G HIVEP3 Missense_Mutation p.G1112A 0.16 benign(0.04) TCGA-05-4390-01 1 47685389 47685389 C A TAL1 3'UTR 0.26 TCGA-05-4390-01 1 6214773 6214773 G A CHD5 Missense_Mutation p.P231L 0.21 tolerated_low_confidence(0.18) benign(0.001) TCGA-05-4390-01 1 67804386 67804386 G A IL12RB2 Silent p.K346K 0.26 TCGA-05-4390-01 1 75037360 75037360 C A C1orf173 Missense_Mutation p.G1345V 0.23 tolerated(0.23) benign(0.074) TCGA-05-4390-01 1 77094408 77094408 T G ST6GALNAC3 Missense_Mutation p.F279V 0.30 probably_damaging(0.999) TCGA-05-4390-01 1 79002220 79002220 G T PTGFR Missense_Mutation p.A310S 0.14 deleterious(0.04) possibly_damaging(0.804) TCGA-05-4390-01 1 85547062 85547062 A T WDR63 Silent p.A83A 0.26 TCGA-05-4390-01 1 86210400 86210400 G T COL24A1 Missense_Mutation p.P1541T 0.46 deleterious(0) probably_damaging(1) TCGA-05-4390-01 20 2321104 2321104 G T TGM3 Missense_Mutation p.E653D 0.18 deleterious(0.02) benign(0.057) TCGA-05-4390-01 20 25485607 25485607 C A NINL Missense_Mutation p.G209W 0.24 deleterious(0) probably_damaging(0.996) TCGA-05-4390-01 20 29845536 29845536 G T DEFB115 Missense_Mutation p.V24L 0.51 tolerated(0.07) possibly_damaging(0.866) TCGA-05-4390-01 20 33999771 33999771 C A UQCC1 5'UTR 0.26 TCGA-05-4390-01 20 35444016 35444016 T G SOGA1 Missense_Mutation p.Q610P 0.18 tolerated(0.11) possibly_damaging(0.786) TCGA-05-4390-01 20 42355414 42355414 G A GTSF1L 5'UTR 0.56 TCGA-05-4390-01 20 44684841 44684841 C T SLC12A5 Missense_Mutation p.A970V 0.36 tolerated(0.08) benign(0.15) TCGA-05-4390-01 20 47989700 47989700 G T KCNB1 Missense_Mutation p.S799R 0.29 tolerated_low_confidence(0.24) benign(0.023) TCGA-05-4390-01 20 48263586 48263586 T A B4GALT5 Missense_Mutation p.T94S 0.16 tolerated(0.45) benign(0.001) TCGA-05-4390-01 20 50139662 50139662 G T NFATC2 Missense_Mutation p.P373H 0.14 tolerated(0.53) probably_damaging(0.957) TCGA-05-4390-01 20 5283097 5283097 C A PROKR2 Silent p.R248R 0.38 TCGA-05-4390-01 20 56098871 56098871 G T CTCFL Missense_Mutation p.Q131K 0.12 tolerated(0.2) benign(0.079) TCGA-05-4390-01 20 57829372 57829372 G C ZNF831 Missense_Mutation p.E1536D 0.46 tolerated(0.15) possibly_damaging(0.453) TCGA-05-4390-01 20 60776117 60776117 A T MTG2 Missense_Mutation p.Q402L 0.21 tolerated_low_confidence(0.15) benign(0.001) TCGA-05-4390-01 20 62703650 62703650 A G TCEA2 3'UTR 0.23 TCGA-05-4390-01 20 9459601 9459601 G T PLCB4 Missense_Mutation p.S1177I 0.26 tolerated_low_confidence(0.05) possibly_damaging(0.566) TCGA-05-4390-01 20 9525048 9525048 C A PAK7 Nonsense_Mutation p.E613* 0.52 TCGA-05-4390-01 21 10862876 10862876 C A IGHV1OR21-1 Missense_Mutation p.Q58K 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-05-4390-01 21 11039181 11039181 G A BAGE2 RNA 0.08 TCGA-05-4390-01 21 22838976 22838976 G T NCAM2 Missense_Mutation p.R568S 0.25 tolerated(0.07) possibly_damaging(0.697) TCGA-05-4390-01 21 28306969 28306969 C A ADAMTS5 Missense_Mutation p.G502V 0.15 deleterious(0) probably_damaging(1) TCGA-05-4390-01 21 30343757 30343757 C A LTN1 Missense_Mutation p.A320S 0.12 tolerated(0.11) probably_damaging(0.999) TCGA-05-4390-01 21 32537342 32537342 G A TIAM1 Silent p.T976T 0.10 TCGA-05-4390-01 21 38114105 38114105 T C SIM2 Missense_Mutation p.V313A 0.40 deleterious(0) possibly_damaging(0.507) TCGA-05-4390-01 21 38459658 38459658 G T TTC3 Missense_Mutation p.S34I 0.25 deleterious(0.02) benign(0.056) TCGA-05-4390-01 21 43833217 43833217 C A UBASH3A Missense_Mutation p.P147T 0.21 tolerated(0.06) possibly_damaging(0.573) TCGA-05-4390-01 21 45106693 45106693 A G RRP1B Missense_Mutation p.I340V 0.40 tolerated(0.37) benign(0) TCGA-05-4390-01 21 45815319 45815319 C A TRPM2 Missense_Mutation p.S606Y 0.13 deleterious(0) probably_damaging(0.91) TCGA-05-4390-01 21 45815320 45815320 C A TRPM2 Silent p.S606S 0.13 TCGA-05-4390-01 21 45819256 45819256 A T TRPM2 Nonsense_Mutation p.K714* 0.24 TCGA-05-4390-01 22 16287715 16287715 G T POTEH Silent p.L57L 0.12 TCGA-05-4390-01 22 18301459 18301459 A C MICAL3 Missense_Mutation p.L1323R 0.25 probably_damaging(0.999) TCGA-05-4390-01 22 19318997 19318997 C A HIRA Missense_Mutation p.C1007F 0.19 tolerated(0.58) benign(0.02) TCGA-05-4390-01 22 20937232 20937232 A T MED15 Silent p.S505S 0.36 TCGA-05-4390-01 22 22891032 22891032 T A PRAME Silent p.I329I 0.44 TCGA-05-4390-01 22 23264983 23264983 C T IGLC7 Silent p.S73S 0.55 TCGA-05-4390-01 22 25627657 25627657 C A CRYBB2 Missense_Mutation p.A179D 0.38 deleterious(0) probably_damaging(0.995) TCGA-05-4390-01 22 30660280 30660281 - T OSM Frame_Shift_Ins p.K119Qfs*46 0.33 TCGA-05-4390-01 22 30738254 30738254 T C SF3A1 Missense_Mutation p.Y271C 0.33 deleterious(0) probably_damaging(0.996) TCGA-05-4390-01 22 32233048 32233048 C T DEPDC5 Missense_Mutation p.P745L 0.20 deleterious(0) probably_damaging(0.999) TCGA-05-4390-01 22 37462912 37462912 C A TMPRSS6 Missense_Mutation p.R744L 0.31 deleterious(0) probably_damaging(0.95) TCGA-05-4390-01 22 38884180 38884180 G A DDX17 Intron 0.24 TCGA-05-4390-01 2 10269234 10269234 A G RRM2 Missense_Mutation p.I384V 0.36 tolerated_low_confidence(0.07) possibly_damaging(0.511) TCGA-05-4390-01 2 107049613 107049613 A C RGPD3 Missense_Mutation p.H778Q 0.14 deleterious(0.01) benign(0.029) TCGA-05-4390-01 2 107459835 107459835 G A ST6GAL2 Missense_Mutation p.S200F 0.33 possibly_damaging(0.704) TCGA-05-4390-01 2 109545663 109545663 C T EDAR Missense_Mutation p.C116Y 0.26 deleterious(0) probably_damaging(0.994) TCGA-05-4390-01 2 118698795 118698795 G C CCDC93 Missense_Mutation p.Q498E 0.33 deleterious(0) probably_damaging(0.999) TCGA-05-4390-01 2 128252492 128252492 C A IWS1 Silent p.L585L 0.29 TCGA-05-4390-01 2 128322932 128322932 T C MYO7B Missense_Mutation p.L86P 0.32 deleterious(0) probably_damaging(0.992) TCGA-05-4390-01 2 128322933 128322933 G T MYO7B Silent p.L86L 0.32 TCGA-05-4390-01 2 131984447 131984447 G A POTEE Missense_Mutation p.V288M 0.19 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-05-4390-01 2 135745412 135745412 C A MAP3K19 Missense_Mutation p.V344F 0.42 tolerated(0.8) benign(0.003) TCGA-05-4390-01 2 160020007 160020007 A T TANC1 Missense_Mutation p.Y299F 0.32 tolerated(0.14) probably_damaging(0.935) TCGA-05-4390-01 2 160028721 160028721 G - TANC1 Frame_Shift_Del p.S482Lfs*14 0.29 TCGA-05-4390-01 2 160287467 160287467 G A BAZ2B Missense_Mutation p.P701S 0.31 benign(0.019) TCGA-05-4390-01 2 168101499 168101499 C A XIRP2 Missense_Mutation p.S1199R 0.40 benign(0.177) TCGA-05-4390-01 2 168996894 168996894 C A STK39 Missense_Mutation p.G249C 0.48 deleterious(0) probably_damaging(1) TCGA-05-4390-01 2 169938082 169938082 A T DHRS9 5'UTR 0.37 TCGA-05-4390-01 2 176982209 176982209 G A HOXD10 Silent p.V216V 0.10 TCGA-05-4390-01 2 179396978 179396978 G T TTN Missense_Mutation p.S34788R 0.14 TCGA-05-4390-01 2 179459155 179459155 C A TTN Nonsense_Mutation p.E19356* 0.17 TCGA-05-4390-01 2 179460446 179460446 C A TTN Missense_Mutation p.G19212V 0.43 TCGA-05-4390-01 2 179536845 179536845 C A TTN Missense_Mutation p.G11694C 0.28 TCGA-05-4390-01 2 179546142 179546142 C A TTN Missense_Mutation p.V11070L 0.31 TCGA-05-4390-01 2 196913024 196913024 G A DNAH7 Silent p.S82S 0.44 TCGA-05-4390-01 2 20180465 20180465 C A WDR35 Missense_Mutation p.W98C 0.31 deleterious(0) probably_damaging(0.999) TCGA-05-4390-01 2 203644316 203644316 C T ICA1L Silent p.L463L 0.43 TCGA-05-4390-01 2 204599581 204599581 C G CD28 Silent p.R203R 0.16 TCGA-05-4390-01 2 210558179 210558179 A T MAP2 Missense_Mutation p.S429C 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.778) TCGA-05-4390-01 2 210642131 210642131 C A UNC80 Missense_Mutation p.H150N 0.22 probably_damaging(0.922) TCGA-05-4390-01 2 21233989 21233989 G C APOB Silent p.L1917L 0.32 TCGA-05-4390-01 2 217070015 217070015 G T XRCC5 3'UTR 0.48 TCGA-05-4390-01 2 224828609 224828609 G A MRPL44 Missense_Mutation p.G262D 0.46 deleterious(0) probably_damaging(0.999) TCGA-05-4390-01 2 234370997 234370997 C A DGKD Silent p.I995I 0.12 TCGA-05-4390-01 2 240982289 240982289 G T PRR21 Missense_Mutation p.H37Q 0.38 tolerated_low_confidence(0.43) probably_damaging(0.944) TCGA-05-4390-01 2 241463637 241463637 C A ANKMY1 Missense_Mutation p.E410D 0.24 tolerated(0.36) benign(0.008) TCGA-05-4390-01 2 241530258 241530258 G T CAPN10 Missense_Mutation p.W100C 0.23 deleterious(0) possibly_damaging(0.612) TCGA-05-4390-01 2 242066563 242066563 C A PASK Silent p.G589G 0.39 TCGA-05-4390-01 2 26702462 26702462 C G OTOF Missense_Mutation p.E658Q 0.40 tolerated(0.13) benign(0.272) TCGA-05-4390-01 2 27456644 27456644 G T CAD Missense_Mutation p.V1123L 0.27 deleterious(0) probably_damaging(0.99) TCGA-05-4390-01 2 32724814 32724814 G T BIRC6 Missense_Mutation p.R2890L 0.35 probably_damaging(0.991) TCGA-05-4390-01 2 33585790 33585790 C A LTBP1 Nonsense_Mutation p.S1376* 0.39 TCGA-05-4390-01 2 39931220 39931220 G T TMEM178A Splice_Site p.X134_splice 0.34 TCGA-05-4390-01 2 45236176 45236176 C A SIX2 Missense_Mutation p.G25V 0.18 deleterious(0) possibly_damaging(0.781) TCGA-05-4390-01 2 71591170 71591170 G T ZNF638 Missense_Mutation p.S502I 0.26 deleterious(0.01) possibly_damaging(0.723) TCGA-05-4390-01 2 73675761 73675761 G T ALMS1 Missense_Mutation p.D702Y 0.35 probably_damaging(0.976) TCGA-05-4390-01 2 79253910 79253910 C A REG3G Missense_Mutation p.P50T 0.38 deleterious(0.02) benign(0.001) TCGA-05-4390-01 2 79878763 79878763 G T CTNNA2 Silent p.L27L 0.47 TCGA-05-4390-01 2 80816498 80816498 G C CTNNA2 Missense_Mutation p.E693Q 0.28 tolerated(0.29) benign(0.23) TCGA-05-4390-01 2 89459461 89459461 G A IGKV6-21 Missense_Mutation p.T39I 0.37 deleterious(0.03) possibly_damaging(0.871) TCGA-05-4390-01 2 96945230 96945230 C A SNRNP200 Missense_Mutation p.D1698Y 0.35 deleterious(0.01) possibly_damaging(0.818) TCGA-05-4390-01 3 100963380 100963380 C T IMPG2 Missense_Mutation p.G599S 0.19 tolerated(1) benign(0) TCGA-05-4390-01 3 10145908 10145908 G T FANCD2OS 3'UTR 0.25 TCGA-05-4390-01 3 102157407 102157407 T A ZPLD1 Missense_Mutation p.C42S 0.32 deleterious(0) probably_damaging(0.924) TCGA-05-4390-01 3 108698419 108698419 G T MORC1 Missense_Mutation p.A807E 0.32 tolerated(1) benign(0.001) TCGA-05-4390-01 3 112358661 112358661 C A CCDC80 Missense_Mutation p.G31V 0.26 tolerated_low_confidence(0.12) benign(0.044) TCGA-05-4390-01 3 113084979 113084979 C A WDR52 Silent p.V874V 0.21 TCGA-05-4390-01 3 113084981 113084981 C A WDR52 Missense_Mutation p.V874L 0.22 tolerated(0.74) benign(0.043) TCGA-05-4390-01 3 113724429 113724429 T A KIAA1407 Silent p.A598A 0.39 TCGA-05-4390-01 3 113890579 113890579 T A DRD3 Silent p.V87V 0.27 TCGA-05-4390-01 3 119462963 119462963 C T MAATS1 Missense_Mutation p.R608W 0.23 deleterious(0) probably_damaging(1) TCGA-05-4390-01 3 122446791 122446791 G T PARP14 Missense_Mutation p.V1692F 0.34 deleterious(0) probably_damaging(0.994) TCGA-05-4390-01 3 123634422 123634422 G T CCDC14 Missense_Mutation p.S648Y 0.32 deleterious(0) probably_damaging(0.919) TCGA-05-4390-01 3 129293305 129293305 G T PLXND1 Missense_Mutation p.S853R 0.32 tolerated(0.41) probably_damaging(0.944) TCGA-05-4390-01 3 140251280 140251280 C A CLSTN2 Missense_Mutation p.H487N 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-05-4390-01 3 140277558 140277558 C A CLSTN2 Silent p.R634R 0.24 TCGA-05-4390-01 3 140419870 140419870 C T TRIM42 3'UTR 0.29 TCGA-05-4390-01 3 142840944 142840944 T A CHST2 Missense_Mutation p.V429E 0.49 deleterious(0) probably_damaging(0.966) TCGA-05-4390-01 3 14861826 14861826 G A FGD5 Silent p.V416V 0.19 TCGA-05-4390-01 3 154055976 154055976 G A GPR149 Missense_Mutation p.L570F 0.43 deleterious(0) probably_damaging(0.999) TCGA-05-4390-01 3 155632279 155632279 C A GMPS Silent p.R320R 0.30 TCGA-05-4390-01 3 160783208 160783208 G T PPM1L Missense_Mutation p.A198S 0.23 deleterious(0) probably_damaging(0.992) TCGA-05-4390-01 3 164758880 164758880 A - SI Frame_Shift_Del p.Q670Rfs*20 0.19 TCGA-05-4390-01 3 164906717 164906717 C A SLITRK3 Silent p.G634G 0.26 TCGA-05-4390-01 3 169637321 169637321 A T SAMD7 Missense_Mutation p.Q12L 0.34 deleterious(0) possibly_damaging(0.617) TCGA-05-4390-01 3 169637322 169637322 G T SAMD7 Missense_Mutation p.Q12H 0.34 deleterious(0.04) benign(0.026) TCGA-05-4390-01 3 173322536 173322536 G T NLGN1 Missense_Mutation p.D50Y 0.36 deleterious(0.04) possibly_damaging(0.735) TCGA-05-4390-01 3 182947468 182947468 G T MCF2L2 Nonsense_Mutation p.Y677* 0.36 TCGA-05-4390-01 3 183754160 183754160 C A HTR3D Intron 0.33 TCGA-05-4390-01 3 184290644 184290644 G T EPHB3 Missense_Mutation p.R179L 0.37 tolerated(0.13) probably_damaging(1) TCGA-05-4390-01 3 186333559 186333559 G T AHSG Missense_Mutation p.C100F 0.14 deleterious(0) probably_damaging(0.998) TCGA-05-4390-01 3 194080235 194080235 T A LRRC15 Missense_Mutation p.E519V 0.34 tolerated(0.14) benign(0.054) TCGA-05-4390-01 3 194080236 194080236 C T LRRC15 Missense_Mutation p.E519K 0.32 tolerated(0.64) benign(0.002) TCGA-05-4390-01 3 195794416 195794416 G C TFRC Missense_Mutation p.S338C 0.19 deleterious(0) probably_damaging(0.994) TCGA-05-4390-01 3 38044020 38044022 TCT - VILL In_Frame_Del p.F539del 0.22 TCGA-05-4390-01 3 44541551 44541551 C A ZNF852 Nonsense_Mutation p.E240* 0.56 TCGA-05-4390-01 3 4695532 4695532 C T ITPR1 Intron 0.43 TCGA-05-4390-01 3 49343230 49343230 C A USP4 Missense_Mutation p.G349V 0.22 deleterious(0) probably_damaging(0.984) TCGA-05-4390-01 3 50225348 50225348 G A SEMA3F Missense_Mutation p.A720T 0.38 tolerated(0.49) benign(0.001) TCGA-05-4390-01 3 51679122 51679122 C T RAD54L2 Nonsense_Mutation p.Q845* 0.29 TCGA-05-4390-01 3 51897343 51897343 C T IQCF2 Missense_Mutation p.T151I 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-05-4390-01 3 53156537 53156537 G T RFT1 Silent p.I103I 0.43 TCGA-05-4390-01 3 54786654 54786654 G T CACNA2D3 Missense_Mutation p.R399L 0.37 deleterious(0) probably_damaging(0.995) TCGA-05-4390-01 3 64672544 64672544 C T ADAMTS9 Silent p.T72T 0.28 TCGA-05-4390-01 3 71748851 71748851 C A EIF4E3 Missense_Mutation p.W86C 0.24 deleterious(0) probably_damaging(1) TCGA-05-4390-01 3 88040284 88040284 G A HTR1F Missense_Mutation p.V129I 0.16 tolerated(0.5) benign(0.047) TCGA-05-4390-01 4 103911057 103911057 T A SLC9B1 Missense_Mutation p.K37N 0.19 tolerated(0.15) benign(0.147) TCGA-05-4390-01 4 1066813 1066813 G A RNF212 Missense_Mutation p.T248I 0.25 deleterious_low_confidence(0.01) benign(0.256) TCGA-05-4390-01 4 11401268 11401268 G A HS3ST1 Missense_Mutation p.P121L 0.24 deleterious(0) probably_damaging(1) TCGA-05-4390-01 4 114823441 114823441 T A ARSJ Missense_Mutation p.T597S 0.09 tolerated_low_confidence(0.24) benign(0.292) TCGA-05-4390-01 4 119686060 119686060 T C SEC24D Missense_Mutation p.Y398C 0.15 deleterious(0) probably_damaging(0.994) TCGA-05-4390-01 4 122853835 122853835 G A TRPC3 Missense_Mutation p.A193V 0.63 tolerated(0.44) possibly_damaging(0.824) TCGA-05-4390-01 4 129012285 129012285 G T LARP1B Missense_Mutation p.R163I 0.09 deleterious(0) probably_damaging(0.946) TCGA-05-4390-01 4 142640615 142640615 G T IL15 5'UTR 0.40 TCGA-05-4390-01 4 144359508 144359508 A G GAB1 Missense_Mutation p.Y317C 0.11 deleterious(0) probably_damaging(1) TCGA-05-4390-01 4 148589703 148589703 T C PRMT10 Missense_Mutation p.R314G 0.41 deleterious(0) probably_damaging(0.96) TCGA-05-4390-01 4 154548817 154548817 C T KIAA0922 Silent p.P1395P 0.25 TCGA-05-4390-01 4 159174649 159174649 A G TMEM144 Silent p.G336G 0.21 TCGA-05-4390-01 4 162380415 162380415 C A FSTL5 Missense_Mutation p.Q555H 0.62 deleterious(0) probably_damaging(0.976) TCGA-05-4390-01 4 16597466 16597466 T C LDB2 Missense_Mutation p.S90G 0.10 deleterious(0.02) possibly_damaging(0.464) TCGA-05-4390-01 4 169105768 169105768 A T ANXA10 Missense_Mutation p.D281V 0.44 deleterious(0) probably_damaging(1) TCGA-05-4390-01 4 169632955 169632955 C T PALLD Silent p.P615P 0.27 TCGA-05-4390-01 4 420484 420484 T C ABCA11P RNA 0.32 TCGA-05-4390-01 4 42145907 42145907 T A BEND4 Missense_Mutation p.I198F 0.41 deleterious_low_confidence(0.02) benign(0.284) TCGA-05-4390-01 4 47428053 47428053 C A GABRB1 3'UTR 0.38 TCGA-05-4390-01 4 57333788 57333788 T A SRP72 5'UTR 0.47 TCGA-05-4390-01 4 66535311 66535311 G T EPHA5 Silent p.L50L 0.47 TCGA-05-4390-01 4 68562390 68562390 G C UBA6 Missense_Mutation p.S36C 0.31 deleterious(0.01) benign(0.004) TCGA-05-4390-01 4 68938049 68938049 C G TMPRSS11F Missense_Mutation p.R169T 0.61 tolerated(0.72) benign(0) TCGA-05-4390-01 4 69513061 69513061 C T UGT2B15 Missense_Mutation p.D452N 0.22 deleterious(0.01) benign(0.391) TCGA-05-4390-01 4 70620409 70620409 G T SULT1B1 Missense_Mutation p.L86I 0.13 tolerated(0.47) benign(0.008) TCGA-05-4390-01 4 71255577 71255577 C A SMR3B 3'UTR 0.19 TCGA-05-4390-01 4 71347137 71347137 C - MUC7 Frame_Shift_Del p.P226Hfs*44 0.52 TCGA-05-4390-01 4 71532144 71532144 C G IGJ Missense_Mutation p.A22P 0.40 deleterious(0.03) possibly_damaging(0.735) TCGA-05-4390-01 4 74313357 74313357 A G AFP Missense_Mutation p.Q341R 0.38 tolerated(0.16) benign(0.037) TCGA-05-4390-01 4 85724621 85724621 C A WDFY3 Splice_Site p.X810_splice 0.36 TCGA-05-4390-01 4 96140382 96140382 G T UNC5C Missense_Mutation p.D461E 0.27 deleterious(0.03) benign(0.265) TCGA-05-4390-01 5 101834447 101834447 C A SLCO6A1 Missense_Mutation p.R34S 0.23 tolerated(0.65) benign(0.017) TCGA-05-4390-01 5 102895744 102895744 C A NUDT12 Missense_Mutation p.G69V 0.40 deleterious(0) probably_damaging(1) TCGA-05-4390-01 5 127666358 127666358 G A FBN2 Nonsense_Mutation p.Q1418* 0.47 TCGA-05-4390-01 5 127681204 127681204 C A FBN2 Missense_Mutation p.R1021L 0.30 tolerated(0.08) benign(0.23) TCGA-05-4390-01 5 128440707 128440707 A T ISOC1 Missense_Mutation p.Q123L 0.23 deleterious(0) probably_damaging(0.973) TCGA-05-4390-01 5 130799906 130799907 CT A RAPGEF6 Frame_Shift_Del p.K769Nfs*8 0.29 TCGA-05-4390-01 5 140552337 140552337 C A PCDHB7 5'UTR 0.25 TCGA-05-4390-01 5 140752309 140752309 A C PCDHGB3 Missense_Mutation p.D783A 0.45 tolerated(0.25) benign(0.205) TCGA-05-4390-01 5 140762984 140762984 G T PCDHGA7 Missense_Mutation p.S173I 0.25 deleterious_low_confidence(0) probably_damaging(0.925) TCGA-05-4390-01 5 140798154 140798154 G T PCDHGB7 Missense_Mutation p.S243I 0.33 deleterious(0.02) possibly_damaging(0.655) TCGA-05-4390-01 5 149515331 149515331 C A PDGFRB Missense_Mutation p.V51F 0.18 deleterious(0.02) benign(0.376) TCGA-05-4390-01 5 151231087 151231087 C A GLRA1 Missense_Mutation p.S259I 0.29 deleterious(0) probably_damaging(1) TCGA-05-4390-01 5 154395645 154395645 A T KIF4B Silent p.R742R 0.24 TCGA-05-4390-01 5 156589909 156589909 C A FAM71B Missense_Mutation p.R456I 0.17 tolerated(0.12) benign(0) TCGA-05-4390-01 5 15928457 15928457 T A FBXL7 Missense_Mutation p.C196S 0.29 tolerated(0.69) benign(0.026) TCGA-05-4390-01 5 160047932 160047932 G T ATP10B Missense_Mutation p.A613D 0.20 tolerated(0.26) benign(0.395) TCGA-05-4390-01 5 169267762 169267762 C A DOCK2 Missense_Mutation p.A902D 0.27 tolerated(0.05) benign(0.045) TCGA-05-4390-01 5 169469016 169469016 G A DOCK2 Splice_Site p.X1253_splice 0.36 TCGA-05-4390-01 5 169474591 169474591 C A DOCK2 Nonsense_Mutation p.Y1348* 0.36 TCGA-05-4390-01 5 174869090 174869090 C T DRD1 Missense_Mutation p.R338Q 0.39 deleterious(0.03) benign(0.031) TCGA-05-4390-01 5 176084785 176084785 G A TSPAN17 3'UTR 0.24 TCGA-05-4390-01 5 178391974 178391974 G T ZNF454 Missense_Mutation p.S190I 0.13 tolerated(0.13) benign(0.415) TCGA-05-4390-01 5 178555076 178555076 T A ADAMTS2 Missense_Mutation p.Y834F 0.48 deleterious(0.05) probably_damaging(0.999) TCGA-05-4390-01 5 26881466 26881466 G A CDH9 Missense_Mutation p.H717Y 0.38 tolerated(0.12) benign(0.396) TCGA-05-4390-01 5 33947361 33947361 C A SLC45A2 Silent p.L425L 0.39 TCGA-05-4390-01 5 36038112 36038112 G T UGT3A2 Missense_Mutation p.P361Q 0.18 deleterious(0) possibly_damaging(0.718) TCGA-05-4390-01 5 41019043 41019043 G T MROH2B Missense_Mutation p.P840Q 0.29 deleterious(0) probably_damaging(0.954) TCGA-05-4390-01 5 65346652 65346652 C T ERBB2IP Missense_Mutation p.H649Y 0.19 tolerated(0.1) possibly_damaging(0.783) TCGA-05-4390-01 5 66255082 66255082 G T MAST4 Intron 0.19 TCGA-05-4390-01 5 74130289 74130289 T G FAM169A Missense_Mutation p.K151T 0.26 tolerated(0.06) possibly_damaging(0.9) TCGA-05-4390-01 6 102074407 102074407 T A GRIK2 Missense_Mutation p.Y146N 0.39 tolerated(0.1) probably_damaging(0.976) TCGA-05-4390-01 6 129835715 129835715 C A LAMA2 Missense_Mutation p.D3062E 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-05-4390-01 6 130761637 130761637 C A TMEM200A Missense_Mutation p.Q24K 0.20 tolerated(0.08) benign(0.012) TCGA-05-4390-01 6 137245704 137245704 C T SLC35D3 Missense_Mutation p.A374V 0.31 tolerated_low_confidence(0.23) benign(0.001) TCGA-05-4390-01 6 137479601 137479602 - C IL22RA2 Frame_Shift_Ins p.E27Gfs*63 0.19 TCGA-05-4390-01 6 142725021 142725021 G C GPR126 Missense_Mutation p.A680P 0.37 deleterious(0) probably_damaging(1) TCGA-05-4390-01 6 146262953 146262953 C G SHPRH Missense_Mutation p.D766H 0.17 deleterious(0) probably_damaging(0.983) TCGA-05-4390-01 6 150690185 150690185 C T IYD Silent p.P6P 0.39 TCGA-05-4390-01 6 165715541 165715541 G T C6orf118 Silent p.R90R 0.40 TCGA-05-4390-01 6 166574359 166574359 C A T Missense_Mutation p.V334L 0.43 tolerated(0.24) benign(0.002) TCGA-05-4390-01 6 26468137 26468137 C T BTN2A1 Intron 0.09 TCGA-05-4390-01 6 29012657 29012657 A G OR2W1 Missense_Mutation p.I99T 0.70 tolerated(0.2) benign(0.004) TCGA-05-4390-01 6 29054921 29054921 G A OR2B3 Silent p.Y35Y 0.73 TCGA-05-4390-01 6 32011608 32011608 G A TNXB Silent p.I245I 0.05 TCGA-05-4390-01 6 32024666 32024666 T A TNXB Missense_Mutation p.T2614S 0.80 benign(0.001) TCGA-05-4390-01 6 32797760 32797760 T A TAP2 Missense_Mutation p.Q581L 0.73 deleterious(0.01) benign(0.216) TCGA-05-4390-01 6 33163824 33163824 C A RXRB Intron 0.71 TCGA-05-4390-01 6 70647991 70647991 C A COL19A1 Missense_Mutation p.P312Q 0.56 tolerated(0.47) unknown(0) TCGA-05-4390-01 6 84563492 84563492 G T RIPPLY2 Silent p.A58A 0.50 TCGA-05-4390-01 6 85446500 85446500 T A TBX18 Missense_Mutation p.H576L 0.74 deleterious_low_confidence(0.01) benign(0.261) TCGA-05-4390-01 6 90468063 90468063 C A MDN1 Silent p.L871L 0.92 TCGA-05-4390-01 7 100685329 100685329 C A MUC17 Silent p.S3544S 0.30 TCGA-05-4390-01 7 101916724 101916724 A T CUX1 Missense_Mutation p.D446V 0.57 deleterious(0) probably_damaging(1) TCGA-05-4390-01 7 103151432 103151432 G C RELN Missense_Mutation p.H2714D 0.21 deleterious(0.05) probably_damaging(0.956) TCGA-05-4390-01 7 103151433 103151433 G T RELN Missense_Mutation p.F2713L 0.22 deleterious(0.02) probably_damaging(0.93) TCGA-05-4390-01 7 105672970 105672970 G A CDHR3 Missense_Mutation p.G829R 0.38 deleterious(0.05) benign(0.009) TCGA-05-4390-01 7 106508039 106508039 G C PIK3CG Silent p.V11V 0.36 TCGA-05-4390-01 7 107674697 107674697 G T LAMB4 Missense_Mutation p.Q1592K 0.33 tolerated(0.66) benign(0.007) TCGA-05-4390-01 7 110763692 110763692 G A LRRN3 Silent p.E288E 0.15 TCGA-05-4390-01 7 11676130 11676130 G T THSD7A Silent p.R217R 0.18 TCGA-05-4390-01 7 120969762 120969762 G T WNT16 Missense_Mutation p.Q79H 0.45 tolerated(0.2) benign(0.002) TCGA-05-4390-01 7 123508325 123508325 A C HYAL4 5'UTR 0.15 TCGA-05-4390-01 7 128801519 128801519 G T TSPAN33 Splice_Site p.X35_splice 0.32 TCGA-05-4390-01 7 133812369 133812370 - T LRGUK Frame_Shift_Ins p.E84* 0.30 TCGA-05-4390-01 7 137341270 137341270 C A DGKI Missense_Mutation p.R208M 0.40 tolerated(0.26) probably_damaging(0.971) TCGA-05-4390-01 7 142008589 142008589 C A TRBV3-1 Missense_Mutation p.T21K 0.34 deleterious(0.01) possibly_damaging(0.833) TCGA-05-4390-01 7 142099597 142099597 G - TRBV7-8 Frame_Shift_Del p.Q69Rfs*6 0.31 TCGA-05-4390-01 7 142448616 142448616 C T TRBV29-1 Silent p.A70A 0.41 TCGA-05-4390-01 7 142637544 142637544 C A C7orf34 Missense_Mutation p.T105K 0.34 tolerated(0.06) probably_damaging(0.941) TCGA-05-4390-01 7 148978982 148978982 G T ZNF783 Missense_Mutation p.G397W 0.36 deleterious(0.01) probably_damaging(1) TCGA-05-4390-01 7 149561358 149561358 C T ZNF862 Silent p.A1165A 0.28 TCGA-05-4390-01 7 150094431 150094431 A C ZNF775 Missense_Mutation p.K288Q 0.09 deleterious(0) probably_damaging(0.998) TCGA-05-4390-01 7 150324760 150324760 G T GIMAP6 3'UTR 0.34 TCGA-05-4390-01 7 150324761 150324761 G T GIMAP6 3'UTR 0.35 TCGA-05-4390-01 7 150488658 150488658 C A TMEM176B Silent p.S258S 0.40 TCGA-05-4390-01 7 150553761 150553761 C G AOC1 Missense_Mutation p.T68S 0.42 tolerated(1) benign(0.002) TCGA-05-4390-01 7 158109546 158109546 C A PTPRN2 Missense_Mutation p.R81L 0.46 deleterious(0.01) benign(0.247) TCGA-05-4390-01 7 18767241 18767241 G T HDAC9 Silent p.V590V 0.18 TCGA-05-4390-01 7 20441685 20441685 G T ITGB8 Silent p.V541V 0.24 TCGA-05-4390-01 7 21788210 21788210 C T DNAH11 Silent p.S2848S 0.16 TCGA-05-4390-01 7 50607692 50607692 T A DDC Missense_Mutation p.Y79F 0.67 tolerated(0.08) probably_damaging(0.998) TCGA-05-4390-01 7 63982531 63982531 T C ZNF680 Missense_Mutation p.I201V 0.24 deleterious(0.01) benign(0) TCGA-05-4390-01 7 64166746 64166746 A G ZNF107 Missense_Mutation p.I22V 0.30 tolerated(0.21) benign(0.132) TCGA-05-4390-01 7 72281203 72281203 C A TYW1B Missense_Mutation p.G96C 0.19 deleterious(0) probably_damaging(1) TCGA-05-4390-01 7 82579765 82579765 C A PCLO Missense_Mutation p.G3380V 0.30 unknown(0) TCGA-05-4390-01 7 82582433 82582433 A G PCLO Silent p.D2612D 0.42 TCGA-05-4390-01 7 84751060 84751060 T A SEMA3D Nonsense_Mutation p.K50* 0.23 TCGA-05-4390-01 7 87135292 87135292 A G ABCB1 Missense_Mutation p.I1186T 0.32 deleterious(0) probably_damaging(0.999) TCGA-05-4390-01 7 87536810 87536810 C G DBF4 Missense_Mutation p.L453V 0.38 tolerated(0.57) benign(0.076) TCGA-05-4390-01 7 87536811 87536811 T A DBF4 Missense_Mutation p.L453Q 0.37 tolerated(0.3) benign(0.008) TCGA-05-4390-01 7 89900854 89900854 A T C7orf63 Missense_Mutation p.S183C 0.31 deleterious(0) benign(0.005) TCGA-05-4390-01 7 94054961 94054961 C T COL1A2 Nonsense_Mutation p.Q941* 0.35 TCGA-05-4390-01 7 94991730 94991730 G A PON3 Missense_Mutation p.H284Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-05-4390-01 7 96318269 96318269 T C SHFM1 Silent p.L60L 0.21 TCGA-05-4390-01 7 99956677 99956677 G T PILRB Missense_Mutation p.K143N 0.38 tolerated(0.41) benign(0.185) TCGA-05-4390-01 8 105393434 105393434 G T DPYS Missense_Mutation p.H518N 0.43 tolerated_low_confidence(0.6) benign(0.006) TCGA-05-4390-01 8 106801085 106801085 G C ZFPM2 Silent p.L224L 0.38 TCGA-05-4390-01 8 106814109 106814109 G T ZFPM2 Missense_Mutation p.G600V 0.52 deleterious(0) probably_damaging(0.911) TCGA-05-4390-01 8 113293448 113293448 A C CSMD3 Missense_Mutation p.C3155G 0.03 deleterious(0.01) probably_damaging(0.93) TCGA-05-4390-01 8 113293554 113293554 G A CSMD3 Silent p.T3119T 0.14 TCGA-05-4390-01 8 113694845 113694845 G T CSMD3 Missense_Mutation p.P835T 0.57 tolerated(0.06) probably_damaging(1) TCGA-05-4390-01 8 120602768 120602768 G T ENPP2 Missense_Mutation p.S447Y 0.65 deleterious(0) benign(0.313) TCGA-05-4390-01 8 13965682 13965682 G T SGCZ Missense_Mutation p.Q204K 0.45 tolerated(0.92) benign(0.287) TCGA-05-4390-01 8 143614706 143614706 G T BAI1 Missense_Mutation p.W1150L 0.28 deleterious(0.01) possibly_damaging(0.637) TCGA-05-4390-01 8 27466505 27466505 C T CLU Missense_Mutation p.E66K 0.04 deleterious(0.01) possibly_damaging(0.857) TCGA-05-4390-01 8 30695124 30695124 C T TEX15 Silent p.S2509S 0.23 TCGA-05-4390-01 8 35608282 35608282 C A UNC5D Nonsense_Mutation p.Y706* 0.43 TCGA-05-4390-01 8 51664619 51664619 G C SNTG1 Missense_Mutation p.S448T 0.10 tolerated(0.92) benign(0.034) TCGA-05-4390-01 8 62550537 62550537 A G ASPH Silent p.N286N 0.08 TCGA-05-4390-01 8 68131718 68131718 C A ARFGEF1 Missense_Mutation p.R1429I 0.09 deleterious(0.01) probably_damaging(0.961) TCGA-05-4390-01 8 75227183 75227183 T A JPH1 Missense_Mutation p.K351I 0.40 deleterious(0) probably_damaging(0.993) TCGA-05-4390-01 8 75227185 75227185 T G JPH1 Silent p.T350T 0.40 TCGA-05-4390-01 8 75227187 75227187 T A JPH1 Missense_Mutation p.T350S 0.41 tolerated(1) benign(0.024) TCGA-05-4390-01 8 77764871 77764871 G - ZFHX4 Frame_Shift_Del p.R1905Kfs*42 0.12 TCGA-05-4390-01 8 88218342 88218342 G C CNBD1 Missense_Mutation p.E185Q 0.60 deleterious(0.02) possibly_damaging(0.817) TCGA-05-4390-01 9 100057180 100057180 G T CCDC180 5'UTR 0.24 TCGA-05-4390-01 9 101797398 101797398 C A COL15A1 Missense_Mutation p.P728T 0.26 tolerated(0.09) probably_damaging(0.998) TCGA-05-4390-01 9 103310025 103310025 G T TMEFF1 Splice_Site p.X187_splice 0.32 TCGA-05-4390-01 9 104125073 104125073 A C BAAT Silent p.T298T 0.05 TCGA-05-4390-01 9 104238293 104238293 C - TMEM246 Frame_Shift_Del p.G361Afs*10 0.31 TCGA-05-4390-01 9 104433358 104433358 T C GRIN3A Missense_Mutation p.S446G 0.27 deleterious(0) possibly_damaging(0.872) TCGA-05-4390-01 9 105768052 105768052 A C CYLC2 3'UTR 0.24 TCGA-05-4390-01 9 108337293 108337293 C G FKTN 5'UTR 0.38 TCGA-05-4390-01 9 120476380 120476380 G T TLR4 Silent p.L658L 0.28 TCGA-05-4390-01 9 125796810 125796810 G T GPR21 5'UTR 0.35 TCGA-05-4390-01 9 125796811 125796811 G T GPR21 5'UTR 0.37 TCGA-05-4390-01 9 128434679 128434679 C A MAPKAP1 Missense_Mutation p.G59C 0.35 tolerated(0.06) possibly_damaging(0.778) TCGA-05-4390-01 9 131262412 131262412 A C ODF2 Missense_Mutation p.N790H 0.06 deleterious(0) possibly_damaging(0.878) TCGA-05-4390-01 9 131454171 131454171 G C SET Missense_Mutation p.V69L 0.12 deleterious(0.02) possibly_damaging(0.58) TCGA-05-4390-01 9 15971692 15971692 C A CCDC171 Missense_Mutation p.P1280Q 0.06 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-05-4390-01 9 27949528 27949528 A C LINGO2 Missense_Mutation p.M381R 0.57 tolerated(0.18) benign(0.006) TCGA-05-4390-01 9 35618283 35618283 G T CD72 Silent p.T6T 0.59 TCGA-05-4390-01 9 38396132 38396132 G T ALDH1B1 Missense_Mutation p.K129N 0.21 deleterious(0) probably_damaging(0.997) TCGA-05-4390-01 9 5968614 5968614 C T KIAA2026 Silent p.Q539Q 0.52 TCGA-05-4390-01 9 85619415 85619415 G A RASEF Silent p.D400D 0.37 TCGA-05-4390-01 9 87342645 87342645 C - NTRK2 Frame_Shift_Del p.K312Nfs*13 0.16 TCGA-05-4390-01 9 90588866 90588866 C A CDK20 Missense_Mutation p.A54S 0.76 tolerated(0.29) benign(0.047) TCGA-05-4390-01 9 91150599 91150599 C A NXNL2 Missense_Mutation p.R84S 0.77 tolerated(0.48) benign(0.138) TCGA-05-4390-01 9 94484942 94484942 G T ROR2 3'UTR 0.33 TCGA-05-4390-01 X 100626677 100626677 C A BTK Nonsense_Mutation p.E85* 0.05 TCGA-05-4390-01 X 100911043 100911043 G T ARMCX2 Missense_Mutation p.A511E 0.40 deleterious(0.01) probably_damaging(0.986) TCGA-05-4390-01 X 101822135 101822135 C G NXF4 RNA 0.25 TCGA-05-4390-01 X 102931676 102931676 C A MORF4L2 Missense_Mutation p.A94S 0.06 tolerated(0.29) benign(0.004) TCGA-05-4390-01 X 103495020 103495020 C G ESX1 Silent p.P370P 0.29 TCGA-05-4390-01 X 106171518 106171518 C A CLDN2 Silent p.G20G 0.39 TCGA-05-4390-01 X 107402768 107402768 A T COL4A6 Missense_Mutation p.V1580E 0.38 benign(0.061) TCGA-05-4390-01 X 107807133 107807133 C A COL4A5 Missense_Mutation p.P85T 0.31 unknown(0) TCGA-05-4390-01 X 107935990 107935990 G T COL4A5 Missense_Mutation p.S1514I 0.14 probably_damaging(1) TCGA-05-4390-01 X 107979482 107979482 G T IRS4 Silent p.T31T 0.25 TCGA-05-4390-01 X 111025234 111025234 A G TRPC5 Missense_Mutation p.F677L 0.06 tolerated(1) benign(0) TCGA-05-4390-01 X 114856611 114856611 G C PLS3 Missense_Mutation p.E43Q 0.37 tolerated(0.5) benign(0.023) TCGA-05-4390-01 X 118979170 118979170 T A UPF3B Missense_Mutation p.I154F 0.13 deleterious(0.01) probably_damaging(0.985) TCGA-05-4390-01 X 119004598 119004598 C A RNF113A Missense_Mutation p.G327C 0.35 deleterious(0.01) possibly_damaging(0.469) TCGA-05-4390-01 X 119694176 119694176 G T CUL4B Silent p.T124T 0.19 TCGA-05-4390-01 X 122840794 122840794 G T THOC2 Missense_Mutation p.Q46K 0.21 tolerated(0.39) benign(0.014) TCGA-05-4390-01 X 125686305 125686305 G C DCAF12L1 Missense_Mutation p.T96R 0.27 tolerated(0.28) possibly_damaging(0.895) TCGA-05-4390-01 X 128699806 128699806 G A OCRL Silent p.E434E 0.32 TCGA-05-4390-01 X 12905272 12905272 T A TLR7 Missense_Mutation p.F549I 0.35 tolerated(0.08) possibly_damaging(0.864) TCGA-05-4390-01 X 129318489 129318489 C A RAB33A Silent p.S163S 0.22 TCGA-05-4390-01 X 129518863 129518863 C A GPR119 Missense_Mutation p.D187Y 0.46 deleterious(0.04) possibly_damaging(0.565) TCGA-05-4390-01 X 129630111 129630111 C A RP1-274L7.1 Intron 0.42 TCGA-05-4390-01 X 129630227 129630227 C G RP1-274L7.1 Intron 0.23 TCGA-05-4390-01 X 132350996 132350996 T A TFDP3 3'UTR 0.33 TCGA-05-4390-01 X 133378823 133378823 C A CCDC160 5'UTR 0.38 TCGA-05-4390-01 X 134481012 134481012 C A ZNF449 5'UTR 0.48 TCGA-05-4390-01 X 135428831 135428831 C A GPR112 Missense_Mutation p.S989Y 0.39 deleterious(0.05) benign(0.024) TCGA-05-4390-01 X 135574143 135574143 C A BRS3 Missense_Mutation p.A270D 0.43 deleterious(0) probably_damaging(1) TCGA-05-4390-01 X 136112902 136112902 G T GPR101 Missense_Mutation p.T311K 0.40 tolerated_low_confidence(0.3) benign(0.002) TCGA-05-4390-01 X 136652125 136652125 G T ZIC3 Missense_Mutation p.A434S 0.36 tolerated(0.82) benign(0.001) TCGA-05-4390-01 X 137939714 137939714 C A FGF13 Silent p.P59P 0.32 TCGA-05-4390-01 X 137939775 137939775 G A FGF13 Missense_Mutation p.A39V 0.24 deleterious_low_confidence(0.02) benign(0.002) TCGA-05-4390-01 X 138908907 138908907 A T ATP11C Missense_Mutation p.Y38N 0.38 tolerated(0.08) possibly_damaging(0.786) TCGA-05-4390-01 X 142795404 142795404 C A SPANXN2 Missense_Mutation p.A92S 0.31 tolerated(0.44) benign(0.022) TCGA-05-4390-01 X 14627195 14627195 G T GLRA2 Silent p.L266L 0.29 TCGA-05-4390-01 X 148072807 148072807 T A AFF2 Missense_Mutation p.V1294D 0.40 deleterious(0) probably_damaging(0.999) TCGA-05-4390-01 X 149905222 149905222 G C MTMR1 Silent p.V404V 0.30 TCGA-05-4390-01 X 150156302 150156302 C A HMGB3 Missense_Mutation p.A173D 0.42 tolerated(0.1) benign(0.033) TCGA-05-4390-01 X 150817161 150817161 C A PASD1 Missense_Mutation p.A235D 0.38 tolerated(0.62) benign(0.028) TCGA-05-4390-01 X 151514097 151514097 C T GABRA3 Missense_Mutation p.R73H 0.17 tolerated(0.06) probably_damaging(0.993) TCGA-05-4390-01 X 151821209 151821209 C A GABRQ Missense_Mutation p.S455Y 0.39 deleterious(0) probably_damaging(0.992) TCGA-05-4390-01 X 151996243 151996243 A G CETN2 3'UTR 0.50 TCGA-05-4390-01 X 152825205 152825205 G T ATP2B3 Missense_Mutation p.V882L 0.30 deleterious(0.01) possibly_damaging(0.635) TCGA-05-4390-01 X 152914962 152914962 C A DUSP9 Silent p.R217R 0.33 TCGA-05-4390-01 X 153222985 153222985 C T HCFC1 Splice_Site p.X712_splice 0.48 TCGA-05-4390-01 X 153581773 153581773 G C FLNA Missense_Mutation p.I1971M 0.34 deleterious(0.04) benign(0.019) TCGA-05-4390-01 X 153780355 153780355 C A IKBKG Silent p.G114G 0.38 TCGA-05-4390-01 X 153927787 153927787 G T GAB3 Missense_Mutation p.P376Q 0.48 deleterious(0.04) probably_damaging(0.997) TCGA-05-4390-01 X 154065972 154065972 G C F8 Missense_Mutation p.P2319R 0.25 deleterious(0) probably_damaging(1) TCGA-05-4390-01 X 154225253 154225253 G A F8 Missense_Mutation p.S128F 0.37 deleterious(0) probably_damaging(1) TCGA-05-4390-01 X 16142118 16142118 C A GRPR Missense_Mutation p.D14E 0.32 tolerated_low_confidence(0.72) benign(0.001) TCGA-05-4390-01 X 27766660 27766660 C A DCAF8L2 Missense_Mutation p.L550I 0.29 deleterious(0.01) probably_damaging(0.976) TCGA-05-4390-01 X 27839829 27839829 G T MAGEB10 Missense_Mutation p.D136Y 0.33 deleterious(0.01) possibly_damaging(0.634) TCGA-05-4390-01 X 30237448 30237448 G - MAGEB2 Frame_Shift_Del p.D251Ifs*36 0.28 TCGA-05-4390-01 X 30254366 30254366 G T MAGEB3 Missense_Mutation p.D109Y 0.25 deleterious(0) possibly_damaging(0.872) TCGA-05-4390-01 X 31462617 31462617 G T DMD Missense_Mutation p.T3022N 0.43 possibly_damaging(0.607) TCGA-05-4390-01 X 3228241 3228241 C G MXRA5 Missense_Mutation p.R2668P 0.33 deleterious(0.02) probably_damaging(0.968) TCGA-05-4390-01 X 38271170 38271170 C A OTC Missense_Mutation p.P308Q 0.37 tolerated(0.24) benign(0.014) TCGA-05-4390-01 X 46713296 46713296 G T RP2 Missense_Mutation p.G163V 0.37 deleterious(0) probably_damaging(0.984) TCGA-05-4390-01 X 47272883 47272883 G T ZNF157 Nonsense_Mutation p.E471* 0.37 TCGA-05-4390-01 X 48386709 48386709 G A EBP Nonsense_Mutation p.W186* 0.12 TCGA-05-4390-01 X 48687822 48687822 G A ERAS Missense_Mutation p.A97T 0.25 deleterious(0.02) possibly_damaging(0.893) TCGA-05-4390-01 X 49142649 49142649 A T PPP1R3F Silent p.L499L 0.12 TCGA-05-4390-01 X 49773096 49773096 C A CLCN5 Intron 0.37 TCGA-05-4390-01 X 50053545 50053545 G A CCNB3 Silent p.A792A 0.15 TCGA-05-4390-01 X 50377002 50377002 G T SHROOM4 Missense_Mutation p.P691T 0.53 tolerated(0.06) benign(0.23) TCGA-05-4390-01 X 51641289 51641289 G T MAGED1 Missense_Mutation p.A636S 0.36 tolerated_low_confidence(0.06) probably_damaging(0.96) TCGA-05-4390-01 X 51641678 51641678 G T MAGED1 Missense_Mutation p.V651L 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.834) TCGA-05-4390-01 X 53114989 53114989 T G TSPYL2 Missense_Mutation p.I472S 0.35 deleterious_low_confidence(0) benign(0.256) TCGA-05-4390-01 X 53245063 53245063 C - KDM5C Frame_Shift_Del p.E293Rfs*6 0.26 TCGA-05-4390-01 X 54337611 54337611 T C WNK3 Silent p.L217L 0.51 TCGA-05-4390-01 X 54950180 54950180 C A TRO Silent p.T405T 0.33 TCGA-05-4390-01 X 55035570 55035570 A C ALAS2 3'UTR 0.30 TCGA-05-4390-01 X 57620426 57620426 C A ZXDB Missense_Mutation p.P649T 0.29 deleterious(0.01) probably_damaging(0.926) TCGA-05-4390-01 X 5811257 5811257 C T NLGN4X Silent p.S684S 0.23 TCGA-05-4390-01 X 63490885 63490885 A T MTMR8 Missense_Mutation p.L517H 0.19 deleterious(0) benign(0.119) TCGA-05-4390-01 X 68381543 68381543 G A PJA1 Silent p.L513L 0.17 TCGA-05-4390-01 X 68381584 68381584 C T PJA1 Missense_Mutation p.D500N 0.34 deleterious(0.03) probably_damaging(1) TCGA-05-4390-01 X 70345279 70345279 C A MED12 Missense_Mutation p.H769N 0.27 possibly_damaging(0.582) TCGA-05-4390-01 X 70389915 70389915 C A NLGN3 Missense_Mutation p.L839M 0.22 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-05-4390-01 X 73811157 73811157 G A RLIM 3'UTR 0.50 TCGA-05-4390-01 X 77912725 77912725 G T ZCCHC5 Missense_Mutation p.P398H 0.50 tolerated(0.06) possibly_damaging(0.781) TCGA-05-4390-01 X 78616925 78616925 C T ITM2A Missense_Mutation p.V202M 0.07 deleterious(0.05) benign(0.213) TCGA-05-4390-01 X 83599332 83599332 G C HDX Missense_Mutation p.A529G 0.19 tolerated(0.4) benign(0.09) TCGA-05-4390-01 X 8503631 8503631 C A KAL1 Splice_Site p.X614_splice 0.26 TCGA-05-4390-01 X 9001045 9001045 G T FAM9B 5'UTR 0.28 TCGA-05-4390-01 X 92927894 92927894 G T NAP1L3 Missense_Mutation p.A137D 0.34 tolerated(0.06) probably_damaging(0.998) TCGA-05-4390-01 X 99657617 99657617 G T PCDH19 Missense_Mutation p.R841S 0.37 tolerated(0.45) benign(0.13) TCGA-05-4395-01 10 101646282 101646282 G C DNMBP Missense_Mutation p.F1131L 0.49 tolerated(0.12) benign(0.119) TCGA-05-4395-01 10 105191887 105191887 G C PDCD11 Missense_Mutation p.E1124Q 0.39 deleterious(0.03) possibly_damaging(0.501) TCGA-05-4395-01 10 106970956 106970956 G T SORCS3 Missense_Mutation p.A775S 0.36 tolerated(1) benign(0.002) TCGA-05-4395-01 10 114192186 114192186 G T ZDHHC6 Missense_Mutation p.P347T 0.21 deleterious(0) possibly_damaging(0.838) TCGA-05-4395-01 10 115422452 115422452 C G NRAP Missense_Mutation p.E81Q 0.38 deleterious(0.04) benign(0.147) TCGA-05-4395-01 10 117704368 117704368 T A ATRNL1 3'UTR 0.23 TCGA-05-4395-01 10 118360714 118360714 G T PNLIPRP1 Splice_Site p.X355_splice 0.16 TCGA-05-4395-01 10 121275047 121275047 G A RGS10 Silent p.L125L 0.52 TCGA-05-4395-01 10 124043431 124043431 G T BTBD16 Missense_Mutation p.G78V 0.29 tolerated(0.36) benign(0.283) TCGA-05-4395-01 10 124395614 124395614 C T DMBT1 Missense_Mutation p.S2090F 0.19 deleterious(0) probably_damaging(0.944) TCGA-05-4395-01 10 126716241 126716241 C T CTBP2 Missense_Mutation p.E30K 0.16 tolerated_low_confidence(0.07) benign(0.211) TCGA-05-4395-01 10 127697946 127697946 T C FANK1 Missense_Mutation p.V326A 0.27 deleterious(0) benign(0.101) TCGA-05-4395-01 10 129536807 129536807 G A FOXI2 Missense_Mutation p.D179N 0.36 deleterious(0) probably_damaging(0.965) TCGA-05-4395-01 10 133958651 133958651 C T JAKMIP3 Missense_Mutation p.A548V 0.30 deleterious(0) possibly_damaging(0.793) TCGA-05-4395-01 10 15107658 15107658 G T OLAH Nonsense_Mutation p.G213* 0.33 TCGA-05-4395-01 10 55700697 55700697 A G PCDH15 Missense_Mutation p.M1054T 0.12 tolerated(0.34) benign(0.001) TCGA-05-4395-01 10 5955790 5955790 C T FBXO18 Missense_Mutation p.S482F 0.33 deleterious(0.01) possibly_damaging(0.601) TCGA-05-4395-01 10 60588570 60588570 C T BICC1 Silent p.T948T 0.26 TCGA-05-4395-01 10 62547906 62547906 T A CDK1 Missense_Mutation p.I136N 0.49 deleterious(0) probably_damaging(0.997) TCGA-05-4395-01 10 68280485 68280485 G A CTNNA3 Missense_Mutation p.A474V 0.42 tolerated(1) benign(0.001) TCGA-05-4395-01 10 73121984 73121984 C T SLC29A3 Silent p.L349L 0.42 TCGA-05-4395-01 10 97769676 97769676 C A CC2D2B Missense_Mutation p.S39Y 0.24 tolerated(1) possibly_damaging(0.865) TCGA-05-4395-01 11 114401171 114401171 C G NXPE1 Missense_Mutation p.E45Q 0.44 deleterious(0) probably_damaging(0.999) TCGA-05-4395-01 11 118250358 118250358 C T UBE4A Missense_Mutation p.S597F 0.49 deleterious(0) probably_damaging(0.969) TCGA-05-4395-01 11 123814374 123814374 G T OR6T1 Missense_Mutation p.Q58K 0.15 deleterious(0.01) possibly_damaging(0.497) TCGA-05-4395-01 11 124621476 124621476 C T VSIG2 Missense_Mutation p.G21E 0.18 deleterious(0.02) unknown(0) TCGA-05-4395-01 11 129814846 129814846 C G PRDM10 Silent p.P194P 0.44 TCGA-05-4395-01 11 292927 292927 C T ATHL1 Silent p.V400V 0.12 TCGA-05-4395-01 11 32990614 32990614 G T QSER1 Missense_Mutation p.M1581I 0.20 deleterious(0) probably_damaging(0.996) TCGA-05-4395-01 11 44286612 44286612 G A ALX4 Missense_Mutation p.A343V 0.22 tolerated(0.1) possibly_damaging(0.757) TCGA-05-4395-01 11 56230566 56230566 G T OR5M9 Silent p.A104A 0.43 TCGA-05-4395-01 11 5905694 5905694 C G OR52E4 Missense_Mutation p.H58D 0.38 deleterious(0) probably_damaging(0.998) TCGA-05-4395-01 11 59132388 59132388 G A OR5AN1 Missense_Mutation p.G153S 0.26 deleterious(0.01) probably_damaging(0.973) TCGA-05-4395-01 11 6048374 6048374 G T OR56A1 Silent p.A187A 0.41 TCGA-05-4395-01 11 60785317 60785317 C T CD6 Missense_Mutation p.H557Y 0.45 deleterious(0.01) possibly_damaging(0.616) TCGA-05-4395-01 11 64722102 64722102 T C C11orf85 Intron 0.37 TCGA-05-4395-01 11 65113779 65113779 G T DPF2 Missense_Mutation p.W322C 0.14 deleterious(0) probably_damaging(1) TCGA-05-4395-01 11 67191644 67191644 C T CARNS1 Missense_Mutation p.R809W 0.42 deleterious(0) possibly_damaging(0.863) TCGA-05-4395-01 11 6789756 6789756 C T OR2AG2 Missense_Mutation p.V145M 0.44 tolerated(0.05) possibly_damaging(0.517) TCGA-05-4395-01 11 68835056 68835056 C T TPCN2 Missense_Mutation p.T271M 0.53 deleterious(0) probably_damaging(0.992) TCGA-05-4395-01 11 7022088 7022088 C T ZNF214 Missense_Mutation p.G276R 0.42 tolerated(0.3) benign(0.002) TCGA-05-4395-01 11 74914095 74914095 G A SLCO2B1 Intron 0.45 TCGA-05-4395-01 11 78433860 78433860 G T TENM4 Missense_Mutation p.P1218H 0.25 deleterious(0.01) probably_damaging(0.98) TCGA-05-4395-01 11 85428555 85428555 T C SYTL2 Missense_Mutation p.K867R 0.39 tolerated(0.06) benign(0.009) TCGA-05-4395-01 11 92534618 92534618 C G FAT3 Silent p.V2813V 0.26 TCGA-05-4395-01 12 100451895 100451895 G A UHRF1BP1L Missense_Mutation p.P1054S 0.37 tolerated(0.36) benign(0.001) TCGA-05-4395-01 12 100660779 100660779 G A DEPDC4 Nonsense_Mutation p.Q26* 0.34 TCGA-05-4395-01 12 101702085 101702085 G A UTP20 Silent p.V706V 0.30 TCGA-05-4395-01 12 103700057 103700057 A T C12orf42 Missense_Mutation p.V109D 0.23 deleterious(0) possibly_damaging(0.566) TCGA-05-4395-01 12 10460674 10460674 C G KLRD1 5'UTR 0.13 TCGA-05-4395-01 12 105321916 105321916 T A SLC41A2 Missense_Mutation p.L130F 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-05-4395-01 12 10560232 10560232 T C KLRC4 3'UTR 0.10 TCGA-05-4395-01 12 108685534 108685534 G A CMKLR1 3'UTR 0.41 TCGA-05-4395-01 12 108959109 108959109 G A ISCU Missense_Mutation p.E81K 0.28 tolerated_low_confidence(0.06) benign(0.041) TCGA-05-4395-01 12 11061032 11061032 C G TAS2R13 Missense_Mutation p.R289T 0.10 deleterious(0.04) benign(0.223) TCGA-05-4395-01 12 112622801 112622801 G T HECTD4 Silent p.S3177S 0.38 TCGA-05-4395-01 12 116413452 116413452 G A MED13L Missense_Mutation p.A1819V 0.30 deleterious(0.04) benign(0.23) TCGA-05-4395-01 12 122625515 122625515 C G MLXIP Missense_Mutation p.I841M 0.43 deleterious(0) possibly_damaging(0.59) TCGA-05-4395-01 12 122657100 122657100 A T IL31 Missense_Mutation p.D118E 0.36 tolerated(0.71) benign(0.097) TCGA-05-4395-01 12 133237666 133237666 C G POLE Missense_Mutation p.K983N 0.35 deleterious(0) probably_damaging(0.977) TCGA-05-4395-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.62 deleterious(0) possibly_damaging(0.479) TCGA-05-4395-01 12 26749907 26749907 C T ITPR2 Missense_Mutation p.G1388E 0.72 deleterious(0) probably_damaging(0.998) TCGA-05-4395-01 12 2943997 2943997 C G NRIP2 Missense_Mutation p.M51I 0.08 deleterious(0.03) benign(0.007) TCGA-05-4395-01 12 3686040 3686040 G T PRMT8 Missense_Mutation p.W239L 0.74 deleterious(0) possibly_damaging(0.649) TCGA-05-4395-01 12 43846211 43846211 C A ADAMTS20 Missense_Mutation p.G649C 0.20 tolerated(0.08) benign(0.357) TCGA-05-4395-01 12 4648105 4648105 C T RAD51AP1 5'UTR 0.08 TCGA-05-4395-01 12 48596695 48596695 G A OR10AD1 Silent p.I127I 0.36 TCGA-05-4395-01 12 56230818 56230818 A T MMP19 3'UTR 0.43 TCGA-05-4395-01 12 56881845 56881845 G C GLS2 Missense_Mutation p.R20G 0.50 tolerated_low_confidence(0.11) benign(0) TCGA-05-4395-01 12 57037225 57037225 C T ATP5B Missense_Mutation p.E252K 0.28 deleterious_low_confidence(0) possibly_damaging(0.546) TCGA-05-4395-01 12 57863398 57863398 T G GLI1 Missense_Mutation p.L498R 0.24 deleterious(0) probably_damaging(0.998) TCGA-05-4395-01 12 6658970 6658970 G A IFFO1 Silent p.C341C 0.75 TCGA-05-4395-01 12 71016248 71016248 G A PTPRB Silent p.P210P 0.28 TCGA-05-4395-01 12 71016249 71016249 G T PTPRB Missense_Mutation p.P210H 0.28 tolerated_low_confidence(0.61) possibly_damaging(0.698) TCGA-05-4395-01 12 71978259 71978259 C T LGR5 Silent p.F823F 0.32 TCGA-05-4395-01 12 80717559 80717559 G T OTOGL Missense_Mutation p.A1371S 0.46 deleterious(0.04) possibly_damaging(0.553) TCGA-05-4395-01 12 82070623 82070623 C A PPFIA2 Missense_Mutation p.D84Y 0.32 deleterious(0.02) benign(0.26) TCGA-05-4395-01 13 73346338 73346338 C T DIS3 Missense_Mutation p.D488N 0.25 deleterious(0) probably_damaging(1) TCGA-05-4395-01 14 101341417 101341417 G T MIR665 RNA 0.40 TCGA-05-4395-01 14 20692096 20692096 C A OR11H6 Silent p.P76P 0.23 TCGA-05-4395-01 14 21058864 21058864 T C RNASE12 Missense_Mutation p.I7V 0.56 tolerated(0.2) unknown(0) TCGA-05-4395-01 14 21238647 21238647 G T EDDM3B Missense_Mutation p.S113I 0.44 tolerated(0.27) benign(0.003) TCGA-05-4395-01 14 22356394 22356394 G C TRAV12-2 Missense_Mutation p.V18L 0.18 tolerated(0.07) unknown(0) TCGA-05-4395-01 14 22592238 22592238 G A TRAV26-1 Missense_Mutation p.R108K 0.15 tolerated(0.07) benign(0.287) TCGA-05-4395-01 14 23883231 23883231 G C MYH7 Silent p.R1880R 0.21 TCGA-05-4395-01 14 24884150 24884150 G T NYNRIN Silent p.L1065L 0.39 TCGA-05-4395-01 14 25100341 25100341 G A GZMB Missense_Mutation p.P227L 0.26 deleterious(0.02) probably_damaging(0.97) TCGA-05-4395-01 14 39769164 39769164 C G CTAGE5 Missense_Mutation p.L262V 0.43 tolerated(0.13) benign(0.17) TCGA-05-4395-01 14 39796151 39796151 C T CTAGE5 Missense_Mutation p.H591Y 0.39 deleterious(0) possibly_damaging(0.888) TCGA-05-4395-01 14 42356779 42356779 A T LRFN5 Silent p.A317A 0.30 TCGA-05-4395-01 14 51561379 51561379 C T TRIM9 Silent p.Q93Q 0.24 TCGA-05-4395-01 14 52936818 52936818 T A TXNDC16 Nonsense_Mutation p.K519* 0.49 TCGA-05-4395-01 14 60759220 60759220 G T PPM1A 3'UTR 0.17 TCGA-05-4395-01 14 60938435 60938435 A G C14orf39 Missense_Mutation p.C116R 0.46 tolerated(0.14) benign(0) TCGA-05-4395-01 14 69908952 69908952 G A SLC39A9 Silent p.Q124Q 0.17 TCGA-05-4395-01 14 75142577 75142577 T C AREL1 Missense_Mutation p.Y302C 0.18 deleterious(0.02) possibly_damaging(0.707) TCGA-05-4395-01 14 81610058 81610058 C T TSHR Silent p.L552L 0.15 TCGA-05-4395-01 14 99879343 99879343 C A SETD3 Missense_Mutation p.R265L 0.35 tolerated(0.1) benign(0.294) TCGA-05-4395-01 15 20874802 20874802 C T NBEAP1 RNA 0.24 TCGA-05-4395-01 15 24922567 24922567 C A NPAP1 Missense_Mutation p.S518Y 0.59 deleterious(0) benign(0.362) TCGA-05-4395-01 15 25468258 25468258 C A SNORD115-27 3'Flank 0.56 TCGA-05-4395-01 15 41222082 41222082 A G DLL4 Missense_Mutation p.Q35R 0.53 tolerated(0.18) benign(0.005) TCGA-05-4395-01 15 65622919 65622919 T C IGDCC3 Silent p.G574G 0.46 TCGA-05-4395-01 15 75651770 75651770 G A MAN2C1 Missense_Mutation p.P653L 0.38 tolerated(0.19) benign(0.001) TCGA-05-4395-01 15 79606204 79606204 G T TMED3 Missense_Mutation p.A92S 0.43 deleterious(0.03) benign(0.396) TCGA-05-4395-01 15 85401093 85401093 G A ALPK3 Missense_Mutation p.G1244S 0.29 deleterious(0.04) possibly_damaging(0.799) TCGA-05-4395-01 15 88678610 88678610 C A NTRK3 Missense_Mutation p.S309I 0.27 tolerated(0.32) benign(0.028) TCGA-05-4395-01 15 89386649 89386649 G A ACAN Missense_Mutation p.R274Q 0.15 deleterious(0.01) unknown(0) TCGA-05-4395-01 15 91827441 91827441 C G SV2B Silent p.L566L 0.32 TCGA-05-4395-01 16 20380967 20380967 A T PDILT Silent p.R321R 0.31 TCGA-05-4395-01 16 20430688 20430688 C A ACSM5 Missense_Mutation p.S185Y 0.31 tolerated(0.8) possibly_damaging(0.46) TCGA-05-4395-01 16 20788795 20788795 A G ACSM3 Silent p.L177L 0.32 TCGA-05-4395-01 16 2347904 2347904 G A ABCA3 Nonsense_Mutation p.Q639* 0.49 TCGA-05-4395-01 16 30391340 30391340 C T SEPT1 Silent p.L196L 0.36 TCGA-05-4395-01 16 66918316 66918316 C T PDP2 Silent p.S43S 0.11 TCGA-05-4395-01 16 67645894 67645894 G C CTCF Silent p.T274T 0.07 TCGA-05-4395-01 16 67911274 67911274 C T EDC4 Silent p.F202F 0.63 TCGA-05-4395-01 16 70573038 70573038 C A SF3B3 Missense_Mutation p.T332N 0.13 deleterious(0) probably_damaging(0.982) TCGA-05-4395-01 16 70573039 70573039 T A SF3B3 Silent p.T332T 0.12 TCGA-05-4395-01 16 75563008 75563008 G A CHST5 3'UTR 0.60 TCGA-05-4395-01 16 75563474 75563474 C A CHST5 Missense_Mutation p.S270I 0.18 deleterious(0) probably_damaging(1) TCGA-05-4395-01 16 7703845 7703845 C A RBFOX1 Silent p.T282T 0.40 TCGA-05-4395-01 16 77401460 77401460 C A ADAMTS18 Missense_Mutation p.G219V 0.54 tolerated(0.38) benign(0.002) TCGA-05-4395-01 16 8993022 8993022 C A USP7 Missense_Mutation p.R829S 0.28 deleterious(0.04) possibly_damaging(0.565) TCGA-05-4395-01 17 10419599 10419599 C A MYH1 Nonsense_Mutation p.E89* 0.52 TCGA-05-4395-01 17 10419608 10419608 C A MYH1 Missense_Mutation p.D86Y 0.51 tolerated(0.05) probably_damaging(0.967) TCGA-05-4395-01 17 11725838 11725838 C A DNAH9 Silent p.I2978I 0.60 TCGA-05-4395-01 17 16527059 16527059 T C ZNF624 Missense_Mutation p.I381V 0.66 tolerated(0.18) benign(0.009) TCGA-05-4395-01 17 18023155 18023155 G A MYO15A Silent p.A347A 0.09 TCGA-05-4395-01 17 19232056 19232056 G T EPN2 Missense_Mutation p.G394W 0.22 deleterious(0) probably_damaging(0.977) TCGA-05-4395-01 17 38287837 38287837 G A MSL1 Missense_Mutation p.V212I 0.27 tolerated(1) benign(0.001) TCGA-05-4395-01 17 41958159 41958159 C A MPP2 Silent p.R350R 0.42 TCGA-05-4395-01 17 51901812 51901812 A G KIF2B Missense_Mutation p.K473R 0.23 tolerated(0.06) probably_damaging(0.993) TCGA-05-4395-01 17 54230835 54230835 C A ANKFN1 5'Flank 0.29 TCGA-05-4395-01 17 64299089 64299089 C A PRKCA Silent p.I40I 0.45 TCGA-05-4395-01 17 65850144 65850144 G T BPTF Missense_Mutation p.E234D 0.34 benign(0.159) TCGA-05-4395-01 17 7578403 7578403 C T TP53 Missense_Mutation p.C176Y 0.53 deleterious(0) probably_damaging(0.995) TCGA-05-4395-01 18 21474925 21474925 A C LAMA3 Missense_Mutation p.Q1839P 0.67 benign(0.334) TCGA-05-4395-01 18 31325019 31325019 C A ASXL3 Nonsense_Mutation p.S1736* 0.53 TCGA-05-4395-01 18 42532073 42532073 T A SETBP1 Missense_Mutation p.I923N 0.54 tolerated(0.24) possibly_damaging(0.526) TCGA-05-4395-01 19 10169634 10169634 G T C3P1 RNA 0.48 TCGA-05-4395-01 19 10600419 10600419 T C KEAP1 Missense_Mutation p.D479G 0.47 deleterious(0.02) probably_damaging(0.987) TCGA-05-4395-01 19 1207078 1207078 G T STK11 Missense_Mutation p.G56W 0.63 deleterious(0) probably_damaging(1) TCGA-05-4395-01 19 14710915 14710915 C T CLEC17A Missense_Mutation p.T272I 0.63 deleterious(0) probably_damaging(0.999) TCGA-05-4395-01 19 17476412 17476412 G T PLVAP Silent p.R288R 0.50 TCGA-05-4395-01 19 21132566 21132566 C A ZNF85 Missense_Mutation p.H416N 0.28 deleterious(0) probably_damaging(0.999) TCGA-05-4395-01 19 31768902 31768902 C T TSHZ3 Silent p.T599T 0.58 TCGA-05-4395-01 19 40419930 40419930 C A FCGBP Missense_Mutation p.A1022S 0.62 possibly_damaging(0.685) TCGA-05-4395-01 19 40581599 40581599 T A ZNF780A Missense_Mutation p.E251D 0.57 tolerated(0.07) probably_damaging(0.927) TCGA-05-4395-01 19 42600252 42600252 G C POU2F2 Missense_Mutation p.I215M 0.33 deleterious(0) possibly_damaging(0.893) TCGA-05-4395-01 19 43383759 43383759 T A PSG1 5'UTR 0.20 TCGA-05-4395-01 19 44605073 44605073 C T ZNF224 Silent p.L45L 0.23 TCGA-05-4395-01 19 46124826 46124826 C A EML2 Missense_Mutation p.R505L 0.16 deleterious(0) possibly_damaging(0.505) TCGA-05-4395-01 19 51986489 51986489 G T CEACAM18 Missense_Mutation p.V359L 0.53 tolerated(0.2) benign(0.145) TCGA-05-4395-01 19 54761086 54761087 - A LILRB5 5'UTR 0.25 TCGA-05-4395-01 19 56538866 56538867 - CC NLRP5 Frame_Shift_Ins p.P424Lfs*6 0.41 TCGA-05-4395-01 19 8550658 8550658 G T HNRNPM Missense_Mutation p.R449L 0.55 deleterious(0) benign(0.062) TCGA-05-4395-01 19 9086155 9086155 G C MUC16 Missense_Mutation p.S1887C 0.46 unknown(0) TCGA-05-4395-01 19 9361887 9361887 G A OR7E24 Silent p.T56T 0.64 TCGA-05-4395-01 1 103496801 103496801 C A COL11A1 Splice_Site p.X218_splice 0.26 TCGA-05-4395-01 1 110293406 110293406 C A EPS8L3 Missense_Mutation p.R550M 0.29 deleterious(0) possibly_damaging(0.878) TCGA-05-4395-01 1 110709673 110709673 C T SLC6A17 Missense_Mutation p.A41V 0.53 tolerated(0.35) benign(0.028) TCGA-05-4395-01 1 119427674 119427674 C A TBX15 Missense_Mutation p.G391V 0.17 tolerated(0.11) benign(0.444) TCGA-05-4395-01 1 149858184 149858184 C G HIST2H2BE Missense_Mutation p.E3Q 0.18 deleterious_low_confidence(0.05) unknown(0) TCGA-05-4395-01 1 152187998 152187998 G C HRNR Nonsense_Mutation p.S2036* 0.04 TCGA-05-4395-01 1 15420685 15420685 G T KAZN Missense_Mutation p.S411I 0.37 tolerated(0.13) benign(0.146) TCGA-05-4395-01 1 154923837 154923837 G A PBXIP1 Missense_Mutation p.P94S 0.25 tolerated(0.17) benign(0.028) TCGA-05-4395-01 1 155717651 155717651 A T GON4L 3'Flank 0.68 TCGA-05-4395-01 1 155870156 155870156 G C RIT1 3'UTR 0.80 TCGA-05-4395-01 1 156626175 156626175 G T BCAN Missense_Mutation p.D682Y 0.28 deleterious(0) probably_damaging(0.917) TCGA-05-4395-01 1 158389727 158389727 G A OR10K2 Silent p.S310S 0.34 TCGA-05-4395-01 1 158618419 158618419 C T SPTA1 Silent p.Q1198Q 0.15 TCGA-05-4395-01 1 159019219 159019219 T C IFI16 Intron 0.13 TCGA-05-4395-01 1 161207899 161207899 C A NR1I3 5'UTR 0.47 TCGA-05-4395-01 1 16261724 16261724 G A SPEN Missense_Mutation p.E2997K 0.18 benign(0.184) TCGA-05-4395-01 1 163317686 163317686 A T NUF2 Missense_Mutation p.K361M 0.49 deleterious(0) possibly_damaging(0.866) TCGA-05-4395-01 1 178490351 178490351 C A TEX35 Intron 0.16 TCGA-05-4395-01 1 182869054 182869054 G T SHCBP1L 3'UTR 0.45 TCGA-05-4395-01 1 184681006 184681006 C A EDEM3 Silent p.S514S 0.27 TCGA-05-4395-01 1 197021763 197021763 C T F13B Splice_Site p.X519_splice 0.26 TCGA-05-4395-01 1 197101454 197101454 C G ASPM Silent p.L816L 0.34 TCGA-05-4395-01 1 197446916 197446916 G A CRB1 Silent p.Q1376Q 0.84 TCGA-05-4395-01 1 200943165 200943165 G C KIF21B 3'UTR 0.43 TCGA-05-4395-01 1 210847693 210847693 C T HHAT Missense_Mutation p.A486V 0.38 deleterious(0.03) possibly_damaging(0.763) TCGA-05-4395-01 1 215802231 215802231 G A USH2A Silent p.L5148L 0.28 TCGA-05-4395-01 1 226110141 226110141 C T RP4-559A3.7 Intron 0.34 TCGA-05-4395-01 1 228289088 228289093 TCTTTG - C1orf35 In_Frame_Del p.D205_K206del 0.48 TCGA-05-4395-01 1 228333279 228333279 G A GUK1 Silent p.K43K 0.23 TCGA-05-4395-01 1 22853015 22853015 A T ZBTB40 3'UTR 0.40 TCGA-05-4395-01 1 234454683 234454683 T C SLC35F3 Silent p.L381L 0.26 TCGA-05-4395-01 1 248004695 248004695 G A OR11L1 Silent p.F168F 0.32 TCGA-05-4395-01 1 248525769 248525769 C T OR2T4 Missense_Mutation p.S296F 0.26 deleterious(0.01) possibly_damaging(0.521) TCGA-05-4395-01 1 27679907 27679907 G A SYTL1 Missense_Mutation p.E493K 0.19 deleterious(0) probably_damaging(1) TCGA-05-4395-01 1 33292039 33292039 C G S100PBP Silent p.L113L 0.46 TCGA-05-4395-01 1 33585818 33585818 G C ADC 3'UTR 0.22 TCGA-05-4395-01 1 34180202 34180202 G T CSMD2 Missense_Mutation p.L1091M 0.23 deleterious(0.02) probably_damaging(0.961) TCGA-05-4395-01 1 35227576 35227576 C A GJB4 Missense_Mutation p.Q241K 0.42 tolerated(0.22) benign(0) TCGA-05-4395-01 1 35477543 35477543 G C ZMYM6 Nonsense_Mutation p.S337* 0.20 TCGA-05-4395-01 1 37979055 37979075 GAATAATATTGCCATACATCT - MEAF6 In_Frame_Del p.Q52_I58del 0.33 TCGA-05-4395-01 1 39844179 39844179 A G MACF1 Silent p.G2358G 0.41 TCGA-05-4395-01 1 40363447 40363447 C A MYCL Missense_Mutation p.R261M 0.05 tolerated(0.08) benign(0.357) TCGA-05-4395-01 1 52901105 52901105 G A ZCCHC11 Nonsense_Mutation p.Q1399* 0.55 TCGA-05-4395-01 1 53535678 53535678 G T PODN Missense_Mutation p.V99L 0.32 tolerated(0.11) probably_damaging(0.949) TCGA-05-4395-01 1 64936557 64936557 G A CACHD1 5'UTR 0.53 TCGA-05-4395-01 1 71318476 71318476 G A PTGER3 3'UTR 0.22 TCGA-05-4395-01 1 82452662 82452662 G T LPHN2 Intron 0.46 TCGA-05-4395-01 1 89834209 89834209 G C GBP6 Missense_Mutation p.K33N 0.39 tolerated(0.23) benign(0.03) TCGA-05-4395-01 1 91841230 91841230 C T HFM1 Missense_Mutation p.E484K 0.19 deleterious(0) possibly_damaging(0.834) TCGA-05-4395-01 20 13280019 13280019 C A ISM1 Silent p.A436A 0.60 TCGA-05-4395-01 20 30193153 30193153 C T ID1 5'UTR 0.49 TCGA-05-4395-01 20 33122702 33122702 A G DYNLRB1 Intron 0.20 TCGA-05-4395-01 20 33330706 33330706 C T NCOA6 Silent p.P1118P 0.38 TCGA-05-4395-01 20 33891776 33891776 T G UQCC1 Missense_Mutation p.K288Q 0.42 deleterious_low_confidence(0.02) benign(0.236) TCGA-05-4395-01 20 39794177 39794177 G A PLCG1 Missense_Mutation p.E533K 0.25 tolerated(0.06) probably_damaging(0.998) TCGA-05-4395-01 20 42355398 42355398 G T GTSF1L 5'UTR 0.32 TCGA-05-4395-01 20 44578472 44578472 C T ZNF335 Silent p.Q1212Q 0.40 TCGA-05-4395-01 20 46254147 46254147 T C NCOA3 Silent p.D93D 0.22 TCGA-05-4395-01 20 48741560 48741560 G A TMEM189 Intron 0.36 TCGA-05-4395-01 20 57769595 57769595 T G ZNF831 Missense_Mutation p.F1174C 0.26 deleterious(0) probably_damaging(0.997) TCGA-05-4395-01 20 61929352 61929352 T A COL20A1 Missense_Mutation p.V58E 0.35 deleterious(0) probably_damaging(0.989) TCGA-05-4395-01 20 62187844 62187844 C A C20orf195 Missense_Mutation p.N276K 0.22 deleterious(0.02) benign(0.165) TCGA-05-4395-01 20 62871864 62871864 C T MYT1 3'UTR 0.40 TCGA-05-4395-01 21 10906860 10906860 G T TPTE 3'UTR 0.32 TCGA-05-4395-01 21 34918600 34918600 C T SON Silent p.A53A 0.57 TCGA-05-4395-01 21 42080523 42080523 C A DSCAM Missense_Mutation p.R73L 0.66 tolerated(0.07) probably_damaging(1) TCGA-05-4395-01 21 47545874 47545874 C G COL6A2 Missense_Mutation p.I715M 0.54 deleterious(0) probably_damaging(0.999) TCGA-05-4395-01 22 23161990 23161990 C G IGLV3-9 Nonsense_Mutation p.S28* 0.67 TCGA-05-4395-01 22 24584423 24584423 G C SUSD2 3'UTR 0.22 TCGA-05-4395-01 22 26995496 26995496 G A CRYBB1 Silent p.L239L 0.51 TCGA-05-4395-01 22 32302347 32302347 G T DEPDC5 Missense_Mutation p.R1550L 0.60 deleterious(0) probably_damaging(0.998) TCGA-05-4395-01 22 33265054 33265054 C A SYN3 Missense_Mutation p.G174W 0.50 deleterious(0) unknown(0) TCGA-05-4395-01 22 45580629 45580629 C G NUP50 3'UTR 0.44 TCGA-05-4395-01 22 50356707 50356707 G A PIM3 Missense_Mutation p.D305N 0.31 tolerated_low_confidence(0.18) benign(0.008) TCGA-05-4395-01 2 103317603 103317603 C G SLC9A2 Missense_Mutation p.S554C 0.28 deleterious(0.02) possibly_damaging(0.906) TCGA-05-4395-01 2 109547432 109547432 G T EDAR Silent p.L13L 0.12 TCGA-05-4395-01 2 120387532 120387532 G A PCDP1 Splice_Site p.X577_splice 0.23 TCGA-05-4395-01 2 131803548 131803548 C T ARHGEF4 Intron 0.27 TCGA-05-4395-01 2 136594656 136594656 G A LCT Silent p.F28F 0.12 TCGA-05-4395-01 2 141110564 141110564 C T LRP1B Missense_Mutation p.D3870N 0.16 possibly_damaging(0.822) TCGA-05-4395-01 2 141128318 141128318 C A LRP1B Missense_Mutation p.D3657Y 0.16 probably_damaging(0.961) TCGA-05-4395-01 2 15519895 15519895 T C NBAS Missense_Mutation p.M1141V 0.51 deleterious(0.01) benign(0.18) TCGA-05-4395-01 2 160031569 160031569 G T TANC1 Missense_Mutation p.A537S 0.58 tolerated(0.07) probably_damaging(0.999) TCGA-05-4395-01 2 166451720 166451720 A C CSRNP3 Missense_Mutation p.T49P 0.52 tolerated(0.18) benign(0) TCGA-05-4395-01 2 167141098 167141098 C T SCN9A Silent p.P613P 0.41 TCGA-05-4395-01 2 168105626 168105626 G A XIRP2 Missense_Mutation p.S2575N 0.15 benign(0.013) TCGA-05-4395-01 2 169547564 169547564 G C CERS6 Silent p.T162T 0.13 TCGA-05-4395-01 2 170151164 170151164 G C LRP2 Missense_Mutation p.Q162E 0.23 benign(0.076) TCGA-05-4395-01 2 170505760 170505760 C T CCDC173 Missense_Mutation p.E417K 0.11 deleterious(0.05) probably_damaging(0.966) TCGA-05-4395-01 2 189925458 189925458 G C COL5A2 Missense_Mutation p.Q695E 0.27 unknown(0) TCGA-05-4395-01 2 192275861 192275861 G C MYO1B Missense_Mutation p.E946Q 0.13 deleterious(0.04) possibly_damaging(0.794) TCGA-05-4395-01 2 202002426 202002426 A C CFLAR Intron 0.14 TCGA-05-4395-01 2 21235078 21235078 G T APOB Silent p.I1554I 0.16 TCGA-05-4395-01 2 219892544 219892544 G T CCDC108 Missense_Mutation p.T680N 0.26 deleterious(0) probably_damaging(0.999) TCGA-05-4395-01 2 230675910 230675910 G A TRIP12 Missense_Mutation p.S618L 0.27 deleterious(0.01) probably_damaging(0.913) TCGA-05-4395-01 2 233244592 233272673 2:233244592-233272673 - ALPP large deletion 0.28 TCGA-05-4395-01 2 242756197 242756197 G A NEU4 Missense_Mutation p.A117T 0.53 tolerated(0.42) possibly_damaging(0.901) TCGA-05-4395-01 2 36706813 36706813 G T CRIM1 Missense_Mutation p.G450W 0.18 deleterious(0) probably_damaging(1) TCGA-05-4395-01 2 38958889 38958889 T A GALM Silent p.A263A 0.18 TCGA-05-4395-01 2 71043249 71043249 G A CLEC4F Nonsense_Mutation p.Q422* 0.42 TCGA-05-4395-01 2 74763216 74763216 C T LOXL3 Silent p.K385K 0.49 TCGA-05-4395-01 2 79364398 79364398 G T REG1P RNA 0.58 TCGA-05-4395-01 2 88071754 88071754 G A RGPD2 Missense_Mutation p.P1724S 0.57 deleterious_low_confidence(0) benign(0) TCGA-05-4395-01 3 107799048 107799048 C G CD47 Missense_Mutation p.D64H 0.68 tolerated(0.22) benign(0.318) TCGA-05-4395-01 3 130290238 130290238 G T COL6A6 Splice_Site p.X993_splice 0.67 TCGA-05-4395-01 3 154861315 154861315 G A MME Silent p.G424G 0.20 TCGA-05-4395-01 3 164906989 164906989 C A SLITRK3 Missense_Mutation p.V544L 0.63 deleterious(0) possibly_damaging(0.647) TCGA-05-4395-01 3 190027981 190027981 G A CLDN1 Silent p.D150D 0.61 TCGA-05-4395-01 3 195610174 195610174 C A TNK2 Missense_Mutation p.V218L 0.69 deleterious(0) probably_damaging(0.912) TCGA-05-4395-01 3 31871646 31871646 C A OSBPL10 Missense_Mutation p.Q205H 0.72 deleterious(0.01) possibly_damaging(0.827) TCGA-05-4395-01 3 47957470 47957470 G C MAP4 Nonsense_Mutation p.S616* 0.66 TCGA-05-4395-01 3 48697690 48697690 A G CELSR3 Missense_Mutation p.I793T 0.15 deleterious(0) probably_damaging(0.999) TCGA-05-4395-01 3 52668615 52668615 T G PBRM1 Intron 0.68 TCGA-05-4395-01 3 7620469 7620469 C G GRM7 Missense_Mutation p.R626G 0.53 deleterious(0) probably_damaging(0.998) TCGA-05-4395-01 3 97887574 97887574 G T OR5H15 Nonsense_Mutation p.E11* 0.61 TCGA-05-4395-01 4 120221638 120221638 C T C4orf3 Missense_Mutation p.R151Q 0.52 deleterious_low_confidence(0.02) benign(0.417) TCGA-05-4395-01 4 144118998 144118998 C T USP38 Missense_Mutation p.P324L 0.58 deleterious(0) probably_damaging(0.999) TCGA-05-4395-01 4 164449921 164449921 G T MARCH1 Silent p.P283P 0.62 TCGA-05-4395-01 4 20568941 20568941 A T SLIT2 Nonsense_Mutation p.K928* 0.36 TCGA-05-4395-01 4 46981053 46981053 C T GABRA4 Missense_Mutation p.E90K 0.43 deleterious(0.02) probably_damaging(0.947) TCGA-05-4395-01 4 8220037 8220037 C T SH3TC1 Silent p.A293A 0.16 TCGA-05-4395-01 4 997367 997367 C T IDUA Nonsense_Mutation p.Q561* 0.27 TCGA-05-4395-01 5 108704449 108704449 T A PJA2 Splice_Site p.X428_splice 0.13 TCGA-05-4395-01 5 135272539 135272539 G A FBXL21 RNA 0.25 TCGA-05-4395-01 5 137475737 137475738 - A BRD8 3'UTR 0.26 TCGA-05-4395-01 5 149216087 149216087 G T PPARGC1B Missense_Mutation p.G690V 0.45 deleterious(0) probably_damaging(1) TCGA-05-4395-01 5 151266343 151266343 G A GLRA1 Missense_Mutation p.P64L 0.18 deleterious(0) probably_damaging(0.956) TCGA-05-4395-01 5 151784223 151784223 G C NMUR2 Missense_Mutation p.P151R 0.43 deleterious(0) probably_damaging(1) TCGA-05-4395-01 5 15928526 15928526 G T FBXL7 Missense_Mutation p.V219F 0.34 deleterious(0.01) probably_damaging(0.99) TCGA-05-4395-01 5 160039758 160039758 G T ATP10B Missense_Mutation p.T943K 0.50 deleterious(0.02) probably_damaging(0.998) TCGA-05-4395-01 5 176885526 176885526 C A DBN1 Nonsense_Mutation p.E439* 0.25 TCGA-05-4395-01 5 176894024 176894024 C T DBN1 Missense_Mutation p.A201T 0.17 deleterious(0) possibly_damaging(0.856) TCGA-05-4395-01 5 177421277 177421277 G A PROP1 Missense_Mutation p.P58S 0.19 tolerated(0.3) benign(0.03) TCGA-05-4395-01 5 178555091 178555091 G A ADAMTS2 Missense_Mutation p.S829L 0.38 deleterious(0.01) benign(0.02) TCGA-05-4395-01 5 179467544 179467544 C G RNF130 Missense_Mutation p.E117D 0.22 tolerated(0.55) benign(0.048) TCGA-05-4395-01 5 180625764 180625764 G C TRIM7 Missense_Mutation p.S305C 0.22 deleterious(0.05) probably_damaging(0.969) TCGA-05-4395-01 5 182248 182248 C T PLEKHG4B Missense_Mutation p.S1209L 0.48 tolerated(0.39) benign(0.07) TCGA-05-4395-01 5 19473316 19473316 G C CDH18 3'UTR 0.38 TCGA-05-4395-01 5 33947450 33947450 C A SLC45A2 Nonsense_Mutation p.G396* 0.30 TCGA-05-4395-01 5 35955676 35955676 C A UGT3A1 Intron 0.56 TCGA-05-4395-01 5 40979921 40979921 A T C7 Missense_Mutation p.N754Y 0.46 deleterious(0.01) possibly_damaging(0.683) TCGA-05-4395-01 5 70308281 70308281 C A NAIP Missense_Mutation p.M154I 0.05 tolerated(0.08) benign(0) TCGA-05-4395-01 5 82786237 82786237 G T VCAN Missense_Mutation p.D131Y 0.50 deleterious(0) probably_damaging(0.999) TCGA-05-4395-01 5 82833543 82833543 T A VCAN Missense_Mutation p.V1574E 0.32 tolerated(0.09) benign(0.001) TCGA-05-4395-01 6 100838959 100838959 G T SIM1 Missense_Mutation p.H527N 0.59 deleterious_low_confidence(0.01) possibly_damaging(0.877) TCGA-05-4395-01 6 110745950 110745970 AATTTTCTTACAAAATTTATT - SLC22A16 3'UTR 0.46 TCGA-05-4395-01 6 127768137 127768137 C T KIAA0408 Missense_Mutation p.D443N 0.58 deleterious(0) probably_damaging(1) TCGA-05-4395-01 6 155465909 155465909 C T TIAM2 Silent p.F600F 0.48 TCGA-05-4395-01 6 160953584 160953584 G A LPA Silent p.A1980A 0.62 TCGA-05-4395-01 6 165808736 165808736 C A PDE10A Missense_Mutation p.G480V 0.58 tolerated(0.6) benign(0.093) TCGA-05-4395-01 6 28540528 28540528 C A SCAND3 Missense_Mutation p.M1046I 0.59 tolerated(0.09) possibly_damaging(0.608) TCGA-05-4395-01 6 29364792 29364792 G T OR12D2 Missense_Mutation p.G106C 0.56 deleterious(0.02) probably_damaging(0.954) TCGA-05-4395-01 6 56471080 56471080 A G DST Intron 0.56 TCGA-05-4395-01 7 100490353 100490353 G A ACHE Silent p.I385I 0.31 TCGA-05-4395-01 7 102968127 102968127 C G DNAJC2 Missense_Mutation p.D136H 0.06 deleterious(0) probably_damaging(0.981) TCGA-05-4395-01 7 116937675 116937675 G T WNT2 Silent p.R282R 0.61 TCGA-05-4395-01 7 121943805 121943805 G T FEZF1 Nonsense_Mutation p.Y229* 0.62 TCGA-05-4395-01 7 133749316 133749316 C T EXOC4 3'UTR 0.13 TCGA-05-4395-01 7 134253052 134253052 G T AKR1B15 Missense_Mutation p.R98L 0.64 deleterious(0) probably_damaging(0.966) TCGA-05-4395-01 7 148497615 148497615 G C CUL1 Missense_Mutation p.E758Q 0.20 deleterious(0) probably_damaging(0.971) TCGA-05-4395-01 7 29070207 29070207 C A CPVL Missense_Mutation p.G436C 0.30 deleterious(0) probably_damaging(0.954) TCGA-05-4395-01 7 33397600 33397600 C A BBS9 Silent p.L562L 0.05 TCGA-05-4395-01 7 38279737 38279737 G A TRGC2 Missense_Mutation p.S153F 0.51 deleterious(0) probably_damaging(0.993) TCGA-05-4395-01 7 4153810 4153810 G A SDK1 Missense_Mutation p.E1243K 0.29 deleterious(0.02) possibly_damaging(0.476) TCGA-05-4395-01 7 48266982 48266982 G T ABCA13 Missense_Mutation p.G198C 0.40 possibly_damaging(0.781) TCGA-05-4395-01 7 55753014 55753014 C G RNU6-389P 5'Flank 0.10 TCGA-05-4395-01 7 99161786 99161786 C A ZNF655 Intron 0.91 TCGA-05-4395-01 8 113933972 113933972 G A CSMD3 Missense_Mutation p.S506L 0.29 tolerated(0.06) benign(0.099) TCGA-05-4395-01 8 126091004 126091004 C G KIAA0196 Silent p.L229L 0.57 TCGA-05-4395-01 8 12957250 12957250 G A DLC1 Missense_Mutation p.R866C 0.60 tolerated(0.1) benign(0.049) TCGA-05-4395-01 8 143747207 143747207 G A JRK RNA 0.54 TCGA-05-4395-01 8 144733027 144733027 A T ZNF623 Missense_Mutation p.I329F 0.20 tolerated(0.69) probably_damaging(0.954) TCGA-05-4395-01 8 25182907 25182907 A G DOCK5 Missense_Mutation p.K583E 0.60 tolerated(0.42) possibly_damaging(0.626) TCGA-05-4395-01 8 30705190 30705190 T A TEX15 Missense_Mutation p.E448D 0.55 tolerated(0.64) benign(0.006) TCGA-05-4395-01 8 38831817 38831817 G T HTRA4 Missense_Mutation p.G12V 0.50 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-05-4395-01 8 51449322 51449322 C T SNTG1 Missense_Mutation p.L212F 0.57 tolerated(0.71) benign(0.214) TCGA-05-4395-01 8 74903787 74903787 G T LY96 Missense_Mutation p.C37F 0.15 deleterious(0) probably_damaging(1) TCGA-05-4395-01 8 81426180 81426180 G C ZBTB10 Missense_Mutation p.D633H 0.20 deleterious(0.01) possibly_damaging(0.758) TCGA-05-4395-01 8 92983040 92983040 G T RUNX1T1 Missense_Mutation p.T473K 0.30 tolerated(0.11) benign(0.009) TCGA-05-4395-01 9 103213223 103213223 A G MSANTD3 Missense_Mutation p.N268S 0.77 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-05-4395-01 9 107550287 107550287 T G ABCA1 Missense_Mutation p.K2040Q 0.24 tolerated(0.5) probably_damaging(0.985) TCGA-05-4395-01 9 113194786 113194786 C A SVEP1 Missense_Mutation p.C1730F 0.70 probably_damaging(1) TCGA-05-4395-01 9 130428493 130428493 G C STXBP1 Missense_Mutation p.D238H 0.59 deleterious(0) probably_damaging(0.999) TCGA-05-4395-01 9 133995667 133995667 A T AIF1L Silent p.P163P 0.57 TCGA-05-4395-01 9 140611349 140611349 C G EHMT1 Silent p.V119V 0.66 TCGA-05-4395-01 9 37305697 37305697 G T ZCCHC7 Missense_Mutation p.G313C 0.52 deleterious(0) probably_damaging(1) TCGA-05-4395-01 9 990765 990765 C A DMRT3 Missense_Mutation p.N393K 0.45 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-05-4395-01 X 105167242 105167242 G A NRK Missense_Mutation p.E916K 0.54 deleterious(0.01) possibly_damaging(0.689) TCGA-05-4395-01 X 10535644 10535644 C T MID1 Splice_Site 0.17 TCGA-05-4395-01 X 131573492 131573492 G A MBNL3 Missense_Mutation p.R50C 0.17 deleterious(0) probably_damaging(0.961) TCGA-05-4395-01 X 30254710 30254710 C A MAGEB3 Silent p.I223I 0.43 TCGA-05-4395-01 X 30268769 30268769 T A MAGEB1 Silent p.P53P 0.40 TCGA-05-4395-01 X 3242083 3242083 G A MXRA5 Missense_Mutation p.S548F 0.54 deleterious(0) possibly_damaging(0.801) TCGA-05-4395-01 X 47044476 47044476 G A RBM10 Nonsense_Mutation p.W658* 0.55 TCGA-05-4395-01 X 47044477 47044477 G T RBM10 Missense_Mutation p.W658C 0.55 deleterious(0) probably_damaging(0.996) TCGA-05-4395-01 X 48629475 48629475 G C GLOD5 Missense_Mutation p.E112Q 0.62 tolerated(0.12) benign(0.016) TCGA-05-4396-01 10 118957090 118957090 G C KCNK18 Missense_Mutation p.V31L 0.42 deleterious(0) probably_damaging(0.994) TCGA-05-4396-01 10 119798562 119798562 G C RAB11FIP2 Missense_Mutation p.R396G 0.36 tolerated(0.38) benign(0.169) TCGA-05-4396-01 10 126517402 126517402 C T FAM175B Missense_Mutation p.P179L 0.33 deleterious(0.01) possibly_damaging(0.843) TCGA-05-4396-01 10 16528530 16528530 G A PTER Silent p.R204R 0.38 TCGA-05-4396-01 10 22021940 22021940 G T MLLT10 Missense_Mutation p.Q777H 0.31 deleterious(0) probably_damaging(0.997) TCGA-05-4396-01 10 43015604 43015604 C A ZNF37BP RNA 0.43 TCGA-05-4396-01 10 87614258 87614258 G T GRID1 Missense_Mutation p.R410S 0.39 tolerated(0.13) benign(0.14) TCGA-05-4396-01 11 102477386 102477386 C T MMP20 Missense_Mutation p.G278E 0.36 tolerated(0.91) benign(0.002) TCGA-05-4396-01 11 103027385 103027385 A T DYNC2H1 Missense_Mutation p.Y1338F 0.35 benign(0.029) TCGA-05-4396-01 11 111749916 111749916 A T FDXACB1 5'Flank 0.50 TCGA-05-4396-01 11 113651086 113651086 G T CLDN25 Missense_Mutation p.G190V 0.40 deleterious(0.02) possibly_damaging(0.604) TCGA-05-4396-01 11 113711322 113711322 G A USP28 Nonsense_Mutation p.Q178* 0.35 TCGA-05-4396-01 11 120008375 120008375 G T TRIM29 Missense_Mutation p.A122D 0.31 deleterious(0.01) benign(0.145) TCGA-05-4396-01 11 124618384 124618384 C A VSIG2 Silent p.L251L 0.38 TCGA-05-4396-01 11 125488319 125488319 G A STT3A Missense_Mutation p.G609D 0.31 tolerated(0.34) probably_damaging(0.988) TCGA-05-4396-01 11 1269300 1269300 C A MUC5B Silent p.T3730T 0.20 TCGA-05-4396-01 11 133715330 133715330 C A SPATA19 Silent p.T4T 0.29 TCGA-05-4396-01 11 1778748 1778748 G A CTSD Silent p.G170G 0.41 TCGA-05-4396-01 11 17793440 17793440 T G KCNC1 Missense_Mutation p.C267G 0.37 deleterious(0) probably_damaging(0.962) TCGA-05-4396-01 11 4702997 4702997 C A OR51E2 Missense_Mutation p.Q315H 0.42 deleterious(0.01) benign(0.131) TCGA-05-4396-01 11 55606864 55606864 C A OR5D16 Missense_Mutation p.L213I 0.41 tolerated(0.21) possibly_damaging(0.58) TCGA-05-4396-01 11 55761692 55761692 G A OR5F1 Missense_Mutation p.S137F 0.48 deleterious(0) probably_damaging(0.933) TCGA-05-4396-01 11 55872561 55872561 C A OR8H2 Missense_Mutation p.L15I 0.39 deleterious(0) possibly_damaging(0.899) TCGA-05-4396-01 11 55944491 55944491 C A OR5J2 Missense_Mutation p.T133N 0.39 tolerated(0.06) benign(0.009) TCGA-05-4396-01 11 58949675 58949675 A C DTX4 Silent p.G225G 0.32 TCGA-05-4396-01 11 6129007 6129007 C T OR56B4 5'UTR 0.41 TCGA-05-4396-01 11 65360547 65360547 C G KCNK7 Missense_Mutation p.G285R 0.19 tolerated(0.05) benign(0.235) TCGA-05-4396-01 11 67191717 67191717 A T CARNS1 Missense_Mutation p.D833V 0.47 deleterious(0) probably_damaging(1) TCGA-05-4396-01 11 77832145 77832145 T C ALG8 Silent p.L148L 0.34 TCGA-05-4396-01 11 7847399 7847399 C A OR5P3 Missense_Mutation p.G41C 0.32 deleterious(0) probably_damaging(0.988) TCGA-05-4396-01 11 89070632 89070632 G C NOX4 Missense_Mutation p.Q500E 0.32 deleterious(0.02) possibly_damaging(0.472) TCGA-05-4396-01 11 89531463 89531463 C A TRIM49 Missense_Mutation p.M398I 0.26 tolerated(0.68) benign(0.001) TCGA-05-4396-01 11 93118683 93118683 C A CCDC67 Nonsense_Mutation p.C303* 0.28 TCGA-05-4396-01 11 94599210 94599210 C T AMOTL1 Missense_Mutation p.R789C 0.37 deleterious(0) probably_damaging(0.999) TCGA-05-4396-01 12 111760381 111760381 C G CUX2 Missense_Mutation p.Q975E 0.08 tolerated(0.09) benign(0.056) TCGA-05-4396-01 12 114395815 114395815 C A RBM19 Missense_Mutation p.E204D 0.37 tolerated(0.53) benign(0.011) TCGA-05-4396-01 12 121442869 121442869 G A C12orf43 Missense_Mutation p.P130L 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-05-4396-01 12 122614649 122614649 C T MLXIP Silent p.P300P 0.41 TCGA-05-4396-01 12 123481914 123481914 G C PITPNM2 Missense_Mutation p.P477R 0.29 deleterious(0) probably_damaging(0.999) TCGA-05-4396-01 12 130647907 130647907 G T FZD10 Missense_Mutation p.K140N 0.34 tolerated(0.13) possibly_damaging(0.575) TCGA-05-4396-01 12 133220441 133220441 C A POLE Missense_Mutation p.E1424D 0.53 tolerated(0.11) benign(0.109) TCGA-05-4396-01 12 27933611 27933611 C T KLHL42 Silent p.S116S 0.25 TCGA-05-4396-01 12 29911698 29911698 C T TMTC1 Missense_Mutation p.V165I 0.39 deleterious(0) probably_damaging(0.979) TCGA-05-4396-01 12 46205235 46205235 G - ARID2 Frame_Shift_Del p.E108Rfs*107 0.27 TCGA-05-4396-01 12 46230610 46230610 C A ARID2 Missense_Mutation p.L287I 0.36 deleterious(0.03) probably_damaging(0.994) TCGA-05-4396-01 12 49445233 49445233 G A KMT2D Missense_Mutation p.P745S 0.30 unknown(0) TCGA-05-4396-01 12 49981528 49981528 C T FAM186B Missense_Mutation p.G848R 0.43 tolerated(0.15) benign(0.075) TCGA-05-4396-01 12 51888800 51888800 G C SLC4A8 Silent p.V947V 0.34 TCGA-05-4396-01 12 54333156 54333156 C A HOXC13 Missense_Mutation p.P156T 0.31 tolerated(1) benign(0.052) TCGA-05-4396-01 12 54970427 54970427 C G PDE1B Silent p.S483S 0.11 TCGA-05-4396-01 12 57440845 57440845 A T MYO1A Missense_Mutation p.F159L 0.33 deleterious(0) probably_damaging(0.985) TCGA-05-4396-01 12 58191674 58191674 C G AVIL Silent p.G817G 0.24 TCGA-05-4396-01 12 6650692 6650692 G C IFFO1 Silent p.T524T 0.39 TCGA-05-4396-01 12 79689968 79689968 C A SYT1 Silent p.V198V 0.33 TCGA-05-4396-01 12 8023633 8023633 C A SLC2A14 5'UTR 0.42 TCGA-05-4396-01 12 80672915 80672915 A T OTOGL Missense_Mutation p.Y957F 0.30 tolerated(0.72) benign(0.134) TCGA-05-4396-01 13 110437749 110437749 G C IRS2 Missense_Mutation p.R218G 0.12 deleterious(0) probably_damaging(1) TCGA-05-4396-01 13 111532028 111532028 C A ANKRD10 Missense_Mutation p.D407Y 0.27 deleterious(0.01) possibly_damaging(0.462) TCGA-05-4396-01 13 28623785 28623785 T G FLT3 Missense_Mutation p.K290T 0.35 tolerated(0.09) benign(0.096) TCGA-05-4396-01 13 32721512 32721512 G T FRY Missense_Mutation p.A425S 0.31 deleterious(0.02) benign(0.058) TCGA-05-4396-01 13 38153365 38153365 C G POSTN Splice_Site p.X597_splice 0.49 TCGA-05-4396-01 13 52676385 52676385 T A NEK5 Missense_Mutation p.Q218L 0.36 deleterious(0) probably_damaging(0.93) TCGA-05-4396-01 13 70314593 70314593 G T KLHL1 Missense_Mutation p.Q579K 0.41 tolerated(0.21) possibly_damaging(0.733) TCGA-05-4396-01 13 86368421 86368421 G T SLITRK6 Missense_Mutation p.N741K 0.38 tolerated(0.13) benign(0.008) TCGA-05-4396-01 14 20344567 20344567 C A OR4K2 Silent p.I47I 0.36 TCGA-05-4396-01 14 21467712 21467712 C A SLC39A2 Missense_Mutation p.A36E 0.62 tolerated(0.33) benign(0.056) TCGA-05-4396-01 14 22919113 22919113 C A TRDJ1 Missense_Mutation p.R12S 0.80 unknown(0) TCGA-05-4396-01 14 67589024 67589024 C T GPHN Missense_Mutation p.R560C 0.63 deleterious(0) probably_damaging(0.986) TCGA-05-4396-01 14 70633596 70633596 G T SLC8A3 Missense_Mutation p.S515Y 0.62 deleterious(0.04) benign(0.066) TCGA-05-4396-01 14 76964666 76964666 G C ESRRB Silent p.T389T 0.21 TCGA-05-4396-01 15 102264433 102264433 T A TARSL2 Missense_Mutation p.E53V 0.56 deleterious_low_confidence(0) possibly_damaging(0.623) TCGA-05-4396-01 15 23931903 23931903 G A NDN Silent p.H154H 0.46 TCGA-05-4396-01 15 24921131 24921131 C A NPAP1 Missense_Mutation p.H39Q 0.38 deleterious(0) benign(0.402) TCGA-05-4396-01 15 34537995 34537995 C A SLC12A6 Missense_Mutation p.G575C 0.09 deleterious(0) probably_damaging(1) TCGA-05-4396-01 15 42820530 42820530 A - SNAP23 Frame_Shift_Del p.N113Mfs*2 0.32 TCGA-05-4396-01 15 45408801 45408801 C A DUOXA2 Missense_Mutation p.A143E 0.30 tolerated(0.62) benign(0.015) TCGA-05-4396-01 15 45965969 45965969 C - SQRDL Frame_Shift_Del p.M209Cfs*78 0.32 TCGA-05-4396-01 15 83544130 83544130 C T HOMER2 Silent p.P63P 0.39 TCGA-05-4396-01 16 11002979 11002979 C T CIITA Silent p.I917I 0.57 TCGA-05-4396-01 16 20429419 20429419 C G ACSM5 Silent p.V81V 0.41 TCGA-05-4396-01 16 24196864 24196864 G A PRKCB Silent p.K566K 0.61 TCGA-05-4396-01 16 30365255 30365255 C A CD2BP2 Missense_Mutation p.Q114H 0.74 tolerated(0.07) benign(0.17) TCGA-05-4396-01 16 30732600 30732600 G T SRCAP Missense_Mutation p.R1115L 0.58 unknown(0) TCGA-05-4396-01 16 31485199 31485199 G T TGFB1I1 Missense_Mutation p.A76S 0.42 tolerated(0.45) benign(0.223) TCGA-05-4396-01 16 32264924 32264924 A T TP53TG3D Missense_Mutation p.T84S 0.24 tolerated_low_confidence(0.47) possibly_damaging(0.486) TCGA-05-4396-01 16 4700385 4700385 C G MGRN1 Missense_Mutation p.H36Q 0.69 deleterious(0) possibly_damaging(0.905) TCGA-05-4396-01 16 50733803 50733803 G A NOD2 Missense_Mutation p.G160S 0.31 deleterious(0.05) probably_damaging(0.994) TCGA-05-4396-01 16 68912103 68912103 C G TANGO6 Nonsense_Mutation p.S405* 0.37 TCGA-05-4396-01 16 70305819 70305819 C T AARS Missense_Mutation p.G179D 0.34 deleterious(0) probably_damaging(1) TCGA-05-4396-01 16 70954583 70954583 C A HYDIN Missense_Mutation p.V2566L 0.30 possibly_damaging(0.753) TCGA-05-4396-01 16 72142724 72142724 G T DHX38 Missense_Mutation p.R1094L 0.26 tolerated(0.05) probably_damaging(1) TCGA-05-4396-01 16 72142725 72142725 C T DHX38 Silent p.R1094R 0.29 TCGA-05-4396-01 16 72984701 72984701 C G ZFHX3 Silent p.L961L 0.08 TCGA-05-4396-01 17 11572723 11572723 C T DNAH9 Missense_Mutation p.R989W 0.57 probably_damaging(0.952) TCGA-05-4396-01 17 25969281 25969281 C A LGALS9 Silent p.I117I 0.59 TCGA-05-4396-01 17 37821714 37821714 C G TCAP Silent p.P34P 0.09 TCGA-05-4396-01 17 41052971 41052971 C T G6PC Silent p.S26S 0.58 TCGA-05-4396-01 17 42082136 42082136 G A NAGS Silent p.A35A 0.50 TCGA-05-4396-01 17 73975129 73975129 C A ACOX1 Missense_Mutation p.R9L 0.10 deleterious(0) probably_damaging(1) TCGA-05-4396-01 17 7578514 7578514 T - TP53 Frame_Shift_Del p.K139Rfs*31 0.48 TCGA-05-4396-01 17 79632502 79632502 C G OXLD1 Missense_Mutation p.G58A 0.11 tolerated(0.26) benign(0.023) TCGA-05-4396-01 18 22048811 22048811 G T HRH4 Nonsense_Mutation p.E85* 0.27 TCGA-05-4396-01 18 31319522 31319522 G A ASXL3 Silent p.P718P 0.38 TCGA-05-4396-01 18 31325208 31325208 C A ASXL3 Missense_Mutation p.P1799Q 0.41 probably_damaging(0.986) TCGA-05-4396-01 18 43459085 43459085 C A EPG5 Missense_Mutation p.S1921I 0.34 deleterious(0.04) benign(0.335) TCGA-05-4396-01 18 44030290 44030290 C G RNF165 Missense_Mutation p.P216R 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-05-4396-01 18 48450553 48450553 T C ME2 Missense_Mutation p.V381A 0.28 deleterious(0) probably_damaging(1) TCGA-05-4396-01 18 50734108 50734108 T A DCC Nonsense_Mutation p.Y594* 0.33 TCGA-05-4396-01 18 70209161 70209161 T A CBLN2 Missense_Mutation p.T79S 0.18 tolerated(0.4) benign(0.007) TCGA-05-4396-01 18 77659266 77659266 G A KCNG2 Missense_Mutation p.G284E 0.55 deleterious(0) probably_damaging(1) TCGA-05-4396-01 19 10083641 10083641 G C COL5A3 Missense_Mutation p.P1243R 0.13 unknown(0) TCGA-05-4396-01 19 14910187 14910187 C A OR7C1 Silent p.T254T 0.80 TCGA-05-4396-01 19 14938679 14938679 G A OR7A5 Silent p.A125A 0.79 TCGA-05-4396-01 19 16487937 16487937 G C EPS15L1 Silent p.P792P 0.08 TCGA-05-4396-01 19 19545880 19545880 G C GATAD2A Intron 0.17 TCGA-05-4396-01 19 20727897 20727897 C A ZNF737 Missense_Mutation p.C371F 0.52 deleterious(0) probably_damaging(0.997) TCGA-05-4396-01 19 33602681 33602681 G T GPATCH1 Missense_Mutation p.R546L 0.72 tolerated(0.05) benign(0.409) TCGA-05-4396-01 19 41622080 41622080 C A CYP2F1 Intron 0.59 TCGA-05-4396-01 19 43023270 43023270 C A CEACAM1 Missense_Mutation p.W359L 0.09 deleterious(0) probably_damaging(0.999) TCGA-05-4396-01 19 43709764 43709764 C T PSG4 5'UTR 0.62 TCGA-05-4396-01 19 46190836 46190836 C G SNRPD2 Missense_Mutation p.R111P 0.09 tolerated(0.06) benign(0.069) TCGA-05-4396-01 19 51140601 51140601 C G SYT3 Missense_Mutation p.R23P 0.10 deleterious(0.03) benign(0.127) TCGA-05-4396-01 19 55420752 55420752 C A NCR1 Nonsense_Mutation p.Y168* 0.44 TCGA-05-4396-01 19 56379135 56379135 C A NLRP4 Missense_Mutation p.N749K 0.58 tolerated(0.57) benign(0.004) TCGA-05-4396-01 19 9065289 9065289 A G MUC16 Missense_Mutation p.V7386A 0.61 unknown(0) TCGA-05-4396-01 19 9065940 9065940 G T MUC16 Missense_Mutation p.T7169N 0.62 unknown(0) TCGA-05-4396-01 19 9084758 9084758 C A MUC16 Missense_Mutation p.D2353Y 0.66 unknown(0) TCGA-05-4396-01 1 112524907 112524907 T A KCND3 Missense_Mutation p.M148L 0.36 tolerated(0.78) benign(0) TCGA-05-4396-01 1 113464670 113464670 A T SLC16A1 Silent p.I101I 0.41 TCGA-05-4396-01 1 149936055 149936055 C A OTUD7B Intron 0.68 TCGA-05-4396-01 1 152329769 152329769 G A FLG2 Nonsense_Mutation p.Q165* 0.79 TCGA-05-4396-01 1 156756632 156756632 A G PRCC Missense_Mutation p.K250R 0.62 deleterious(0.02) probably_damaging(0.997) TCGA-05-4396-01 1 169586367 169586367 T C SELP Missense_Mutation p.N127S 0.69 tolerated(0.68) benign(0.02) TCGA-05-4396-01 1 171227149 171227149 C A FMO1 5'UTR 0.64 TCGA-05-4396-01 1 175048794 175048794 G C TNN Silent p.T245T 0.20 TCGA-05-4396-01 1 175092647 175092647 C T TNN Missense_Mutation p.S921F 0.74 tolerated(0.1) probably_damaging(0.995) TCGA-05-4396-01 1 176918392 176918392 C T ASTN1 Silent p.E661E 0.67 TCGA-05-4396-01 1 177030282 177030282 C A ASTN1 Missense_Mutation p.D135Y 0.70 deleterious_low_confidence(0.02) possibly_damaging(0.518) TCGA-05-4396-01 1 177199204 177199204 C T BRINP2 Silent p.P64P 0.68 TCGA-05-4396-01 1 200534577 200534577 A G KIF14 Silent p.D1294D 0.75 TCGA-05-4396-01 1 201981142 201981142 A T ELF3 Missense_Mutation p.D74V 0.68 deleterious(0) probably_damaging(0.932) TCGA-05-4396-01 1 204587055 204587055 G T LRRN2 Missense_Mutation p.P689H 0.74 tolerated_low_confidence(0.17) benign(0.001) TCGA-05-4396-01 1 207074963 207074963 A C IL24 Missense_Mutation p.N144T 0.07 deleterious(0.02) probably_damaging(0.941) TCGA-05-4396-01 1 207076354 207076354 G A IL24 Missense_Mutation p.G192R 0.06 deleterious(0) probably_damaging(0.999) TCGA-05-4396-01 1 210273728 210273728 G A SYT14 Silent p.K407K 0.78 TCGA-05-4396-01 1 237791344 237791344 G T RYR2 Missense_Mutation p.G2135V 0.71 probably_damaging(1) TCGA-05-4396-01 1 237843766 237843766 C A RYR2 Missense_Mutation p.P2969H 0.75 probably_damaging(0.998) TCGA-05-4396-01 1 241946679 241946679 G C WDR64 Missense_Mutation p.V891L 0.08 tolerated(0.05) benign(0.075) TCGA-05-4396-01 1 247588607 247588607 T A NLRP3 Missense_Mutation p.L621Q 0.70 tolerated(0.38) probably_damaging(0.95) TCGA-05-4396-01 1 248224549 248224549 T A OR2L3 Missense_Mutation p.M189K 0.52 tolerated(0.66) benign(0.079) TCGA-05-4396-01 1 248224550 248224550 G T OR2L3 Missense_Mutation p.M189I 0.53 tolerated(0.24) benign(0.003) TCGA-05-4396-01 1 248525551 248525551 C A OR2T4 Missense_Mutation p.D223E 0.69 deleterious(0.01) possibly_damaging(0.764) TCGA-05-4396-01 1 25167381 25167381 G T CLIC4 Nonsense_Mutation p.E239* 0.61 TCGA-05-4396-01 1 32636463 32636463 C T KPNA6 Missense_Mutation p.P527S 0.47 tolerated(0.47) benign(0.001) TCGA-05-4396-01 1 41979091 41979091 T C HIVEP3 Missense_Mutation p.Q1934R 0.61 benign(0.001) TCGA-05-4396-01 1 43778157 43778157 T A TIE1 Silent p.T604T 0.28 TCGA-05-4396-01 1 45340362 45340362 G C EIF2B3 Missense_Mutation p.T397S 0.39 tolerated(0.11) benign(0.025) TCGA-05-4396-01 1 59787238 59787238 A T FGGY Missense_Mutation p.Q6L 0.25 tolerated_low_confidence(0.13) benign(0.005) TCGA-05-4396-01 1 67852300 67852300 T A IL12RB2 Missense_Mutation p.C632S 0.62 tolerated(0.09) benign(0.013) TCGA-05-4396-01 1 75684360 75684360 C T SLC44A5 Silent p.L448L 0.62 TCGA-05-4396-01 1 78383891 78383891 G A NEXN Missense_Mutation p.R127H 0.39 deleterious(0) probably_damaging(0.931) TCGA-05-4396-01 1 79404935 79404935 T C ELTD1 Missense_Mutation p.N112D 0.08 tolerated_low_confidence(0.38) benign(0) TCGA-05-4396-01 1 85124125 85124125 G A SSX2IP Silent p.A318A 0.61 TCGA-05-4396-01 1 87380690 87380690 G C HS2ST1 5'UTR 0.08 TCGA-05-4396-01 1 89273449 89273449 A T PKN2 Missense_Mutation p.E698V 0.53 deleterious(0) probably_damaging(0.993) TCGA-05-4396-01 1 94014920 94014920 G A FNBP1L Missense_Mutation p.E530K 0.75 deleterious(0.01) possibly_damaging(0.565) TCGA-05-4396-01 1 94933551 94933551 C T ABCD3 Missense_Mutation p.T108I 0.14 deleterious(0) probably_damaging(0.979) TCGA-05-4396-01 1 95005860 95005861 CA - F3 Frame_Shift_Del p.L55* 0.16 TCGA-05-4396-01 20 23016973 23016973 G A SSTR4 Missense_Mutation p.V285M 0.39 deleterious(0.04) benign(0.072) TCGA-05-4396-01 20 23549030 23549030 C A CST9L Missense_Mutation p.G20C 0.36 tolerated(0.06) probably_damaging(0.997) TCGA-05-4396-01 20 31021635 31021635 G C ASXL1 Missense_Mutation p.R545P 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-05-4396-01 20 33330374 33330374 G C NCOA6 Missense_Mutation p.P1229R 0.35 probably_damaging(0.999) TCGA-05-4396-01 20 36851966 36851966 T A KIAA1755 Nonsense_Mutation p.K748* 0.37 TCGA-05-4396-01 20 44453140 44453140 C T TNNC2 Missense_Mutation p.E65K 0.34 tolerated(0.23) possibly_damaging(0.539) TCGA-05-4396-01 20 44746974 44746974 C T CD40 5'UTR 0.33 TCGA-05-4396-01 20 48252857 48252857 C A B4GALT5 Nonsense_Mutation p.E387* 0.34 TCGA-05-4396-01 20 51872086 51872086 G A TSHZ2 Missense_Mutation p.A697T 0.48 deleterious(0) probably_damaging(0.998) TCGA-05-4396-01 21 11020832 11020832 G C BAGE2 3'Flank 0.05 TCGA-05-4396-01 21 11039215 11039215 T G BAGE2 RNA 0.06 TCGA-05-4396-01 21 38437858 38437858 G T PIGP 3'UTR 0.12 TCGA-05-4396-01 22 20921087 20921087 C A MED15 Missense_Mutation p.Q342K 0.10 tolerated_low_confidence(0.28) unknown(0) TCGA-05-4396-01 22 32650194 32650194 G T SLC5A4 Missense_Mutation p.L48M 0.68 tolerated(0.26) benign(0.303) TCGA-05-4396-01 2 102967993 102967993 T G IL1RL1 Intron 0.46 TCGA-05-4396-01 2 132277823 132277823 A T AC093838.4 RNA 0.44 TCGA-05-4396-01 2 140992354 140992354 C - LRP1B Splice_Site p.X4553_splice 0.26 TCGA-05-4396-01 2 141264383 141264383 C T LRP1B Missense_Mutation p.D2835N 0.35 possibly_damaging(0.822) TCGA-05-4396-01 2 141598583 141598583 G T LRP1B Missense_Mutation p.T1673K 0.38 possibly_damaging(0.557) TCGA-05-4396-01 2 145156296 145156296 A C ZEB2 Missense_Mutation p.L820V 0.43 deleterious(0.01) benign(0.002) TCGA-05-4396-01 2 149799276 149799276 T A KIF5C Splice_Site p.X197_splice 0.62 TCGA-05-4396-01 2 168100039 168100039 G T XIRP2 Missense_Mutation p.V713F 0.33 benign(0.069) TCGA-05-4396-01 2 185801408 185801408 C T ZNF804A Missense_Mutation p.L429F 0.41 deleterious(0.04) benign(0.012) TCGA-05-4396-01 2 186670278 186670278 C A FSIP2 Silent p.I5504I 0.29 TCGA-05-4396-01 2 191109623 191109623 T A HIBCH Missense_Mutation p.E294V 0.35 deleterious(0.01) benign(0.177) TCGA-05-4396-01 2 196746569 196746569 G T DNAH7 Missense_Mutation p.P1971T 0.37 deleterious(0) possibly_damaging(0.833) TCGA-05-4396-01 2 196912157 196912157 C A DNAH7 Missense_Mutation p.G106V 0.38 tolerated_low_confidence(0.16) benign(0.002) TCGA-05-4396-01 2 207169659 207169659 C T ZDBF2 Missense_Mutation p.S136L 0.21 deleterious(0) benign(0.307) TCGA-05-4396-01 2 209353827 209353827 C T PTH2R Silent p.L389L 0.34 TCGA-05-4396-01 2 21242677 21242677 G T APOB Missense_Mutation p.L973M 0.39 benign(0.133) TCGA-05-4396-01 2 225659777 225659777 G T DOCK10 Missense_Mutation p.T1658N 0.38 tolerated(0.07) probably_damaging(0.998) TCGA-05-4396-01 2 231775219 231775219 G T GPR55 Missense_Mutation p.S153R 0.34 deleterious(0.01) probably_damaging(0.972) TCGA-05-4396-01 2 234750475 234750475 C G HJURP Missense_Mutation p.Q317H 0.51 tolerated(0.17) benign(0.078) TCGA-05-4396-01 2 27353581 27353581 C A ABHD1 Missense_Mutation p.A396D 0.35 tolerated(0.33) benign(0.002) TCGA-05-4396-01 2 27375691 27375691 C A TCF23 Missense_Mutation p.L201I 0.42 tolerated_low_confidence(0.05) benign(0.004) TCGA-05-4396-01 2 27708286 27708286 G T IFT172 Missense_Mutation p.L42M 0.36 deleterious(0) probably_damaging(0.997) TCGA-05-4396-01 2 39262581 39262581 C A SOS1 Missense_Mutation p.D309Y 0.34 deleterious(0) possibly_damaging(0.893) TCGA-05-4396-01 2 44016823 44016823 G T DYNC2LI1 Missense_Mutation p.D95Y 0.36 deleterious(0) probably_damaging(0.95) TCGA-05-4396-01 2 46739871 46739871 G A ATP6V1E2 5'UTR 0.29 TCGA-05-4396-01 2 50149313 50149313 C G NRXN1 Silent p.T1471T 0.07 TCGA-05-4396-01 2 62132853 62132853 G C COMMD1 Missense_Mutation p.G14R 0.18 deleterious(0) probably_damaging(1) TCGA-05-4396-01 2 73303311 73303311 C A RAB11FIP5 Splice_Site p.X523_splice 0.42 TCGA-05-4396-01 2 99182490 99182490 A C INPP4A Splice_Site p.X765_splice 0.21 TCGA-05-4396-01 3 121212468 121212468 C A POLQ Silent p.L793L 0.41 TCGA-05-4396-01 3 123452795 123452795 C A MYLK Missense_Mutation p.A350S 0.32 tolerated(0.27) probably_damaging(0.962) TCGA-05-4396-01 3 124449388 124449388 G T UMPS Missense_Mutation p.G24W 0.29 deleterious(0) probably_damaging(1) TCGA-05-4396-01 3 130095223 130095223 C G COL6A5 Missense_Mutation p.L71V 0.08 tolerated(0.07) benign(0.224) TCGA-05-4396-01 3 130463450 130463450 C A PIK3R4 Missense_Mutation p.G205C 0.33 deleterious(0.01) possibly_damaging(0.855) TCGA-05-4396-01 3 135974715 135974715 G T PCCB Missense_Mutation p.R67S 0.44 deleterious_low_confidence(0) probably_damaging(1) TCGA-05-4396-01 3 151599205 151599205 C A SUCNR1 Missense_Mutation p.P292T 0.28 deleterious(0.02) probably_damaging(0.996) TCGA-05-4396-01 3 164741477 164741477 C A SI Missense_Mutation p.G994C 0.36 deleterious(0) probably_damaging(0.999) TCGA-05-4396-01 3 183818191 183818191 C A HTR3E Missense_Mutation p.P11T 0.39 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-05-4396-01 3 192994553 192994553 C A ATP13A5 Missense_Mutation p.A1128S 0.23 tolerated(1) benign(0.032) TCGA-05-4396-01 3 2928832 2928832 G T CNTN4 Missense_Mutation p.E288D 0.41 tolerated(0.19) benign(0.019) TCGA-05-4396-01 3 38521287 38521287 G T ACVR2B Missense_Mutation p.G310V 0.38 tolerated(0.11) benign(0.052) TCGA-05-4396-01 3 40574363 40574363 G T ZNF621 Missense_Mutation p.V368F 0.60 tolerated(0.43) benign(0.002) TCGA-05-4396-01 3 48725827 48725827 G A IP6K2 Missense_Mutation p.T387I 0.30 deleterious(0) probably_damaging(0.945) TCGA-05-4396-01 3 51937040 51937040 C T IQCF1 Missense_Mutation p.M23I 0.39 tolerated_low_confidence(0.17) benign(0) TCGA-05-4396-01 3 52537094 52537094 C G STAB1 Silent p.P221P 0.25 TCGA-05-4396-01 3 56468955 56468955 C A ERC2 Missense_Mutation p.L27F 0.08 deleterious(0.01) probably_damaging(0.986) TCGA-05-4396-01 3 74413646 74413646 A C CNTN3 Silent p.V395V 0.32 TCGA-05-4396-01 3 77693982 77693982 G C ROBO2 Missense_Mutation p.Q1370H 0.44 deleterious_low_confidence(0.01) benign(0.216) TCGA-05-4396-01 4 119059263 119059263 G A NDST3 Missense_Mutation p.V427I 0.33 deleterious(0.04) benign(0.32) TCGA-05-4396-01 4 122742166 122742166 C T CCNA2 Missense_Mutation p.E180K 0.28 tolerated(0.11) benign(0.023) TCGA-05-4396-01 4 129886409 129886409 T G SCLT1 Missense_Mutation p.Q281P 0.21 deleterious(0) probably_damaging(0.999) TCGA-05-4396-01 4 13605302 13605302 C T BOD1L1 Silent p.R1074R 0.33 TCGA-05-4396-01 4 1389294 1389294 G T CRIPAK Missense_Mutation p.C332F 0.40 tolerated(0.17) probably_damaging(0.983) TCGA-05-4396-01 4 141543675 141543675 C G TBC1D9 Missense_Mutation p.D1159H 0.41 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-05-4396-01 4 155468953 155468953 G T PLRG1 Missense_Mutation p.H57N 0.31 tolerated(0.43) benign(0.015) TCGA-05-4396-01 4 156715060 156715060 A T GUCY1B3 Missense_Mutation p.E183V 0.34 deleterious(0.02) benign(0.155) TCGA-05-4396-01 4 15937508 15937508 C T FGFBP1 3'UTR 0.36 TCGA-05-4396-01 4 1719959 1719959 C G TMEM129 Silent p.S200S 0.27 TCGA-05-4396-01 4 187209638 187209638 A T F11 Missense_Mutation p.H583L 0.37 deleterious(0.02) possibly_damaging(0.592) TCGA-05-4396-01 4 187630249 187630249 C T FAT1 Missense_Mutation p.V245M 0.38 probably_damaging(0.947) TCGA-05-4396-01 4 189012726 189012726 A T TRIML2 Missense_Mutation p.V322D 0.33 deleterious(0) probably_damaging(0.994) TCGA-05-4396-01 4 57514950 57514950 T A HOPX 3'UTR 0.49 TCGA-05-4396-01 4 5803796 5803796 A C EVC Missense_Mutation p.K808N 0.07 deleterious(0.03) benign(0.3) TCGA-05-4396-01 4 70898941 70898941 C T HTN3 3'UTR 0.23 TCGA-05-4396-01 5 127595291 127595291 G T FBN2 Silent p.P2865P 0.64 TCGA-05-4396-01 5 134303734 134303734 T C CATSPER3 Missense_Mutation p.V18A 0.66 tolerated(0.12) benign(0.024) TCGA-05-4396-01 5 140515006 140515006 G C PCDHB5 5'UTR 0.09 TCGA-05-4396-01 5 140516259 140516259 G T PCDHB5 Nonsense_Mutation p.E415* 0.58 TCGA-05-4396-01 5 140794435 140794435 G T PCDHGA10 Nonsense_Mutation p.E565* 0.65 TCGA-05-4396-01 5 169188557 169188557 C A DOCK2 Missense_Mutation p.P828T 0.73 tolerated(0.23) benign(0.067) TCGA-05-4396-01 5 170863159 170863159 G C FGF18 Silent p.R44R 0.09 TCGA-05-4396-01 5 178392340 178392340 G A ZNF454 Missense_Mutation p.R312K 0.76 tolerated(0.29) benign(0.025) TCGA-05-4396-01 5 26881223 26881223 T C CDH9 3'UTR 0.51 TCGA-05-4396-01 5 36608612 36608612 C A SLC1A3 Silent p.A29A 0.20 TCGA-05-4396-01 5 41313645 41313645 G - PLCXD3 3'UTR 0.08 TCGA-05-4396-01 5 41939605 41939605 T C FBXO4 Missense_Mutation p.S321P 0.65 tolerated(0.61) benign(0.001) TCGA-05-4396-01 5 5464767 5464767 C T KIAA0947 Nonsense_Mutation p.Q1774* 0.37 TCGA-05-4396-01 5 80409665 80409665 C A RASGRF2 Missense_Mutation p.P799Q 0.09 deleterious_low_confidence(0.01) benign(0.257) TCGA-05-4396-01 6 144033228 144033228 G A PHACTR2 Missense_Mutation p.R41K 0.39 deleterious(0) probably_damaging(0.992) TCGA-05-4396-01 6 147684611 147684611 C T STXBP5 Missense_Mutation p.R896W 0.32 deleterious(0) probably_damaging(0.978) TCGA-05-4396-01 6 169637803 169637803 C A THBS2 Missense_Mutation p.R406L 0.40 deleterious(0) probably_damaging(0.987) TCGA-05-4396-01 6 24843408 24843408 C T FAM65B Silent p.E534E 0.42 TCGA-05-4396-01 6 29395095 29395095 T A OR11A1 Silent p.L108L 0.47 TCGA-05-4396-01 6 33133723 33133723 G T COL11A2 Silent p.G1403G 0.32 TCGA-05-4396-01 6 36259267 36259267 C G PNPLA1 Missense_Mutation p.R126G 0.14 deleterious(0) probably_damaging(0.993) TCGA-05-4396-01 6 39285675 39285675 A G KCNK16 Missense_Mutation p.Y128H 0.35 deleterious(0) probably_damaging(1) TCGA-05-4396-01 6 49753693 49753693 A G PGK2 Missense_Mutation p.L403P 0.45 deleterious(0.02) probably_damaging(0.981) TCGA-05-4396-01 6 56373423 56373423 C G DST Missense_Mutation p.L3758F 0.35 probably_damaging(0.959) TCGA-05-4396-01 6 56516036 56516036 G T DST Missense_Mutation p.D196E 0.36 probably_damaging(0.994) TCGA-05-4396-01 6 7231086 7231086 C A RREB1 Silent p.S918S 0.53 TCGA-05-4396-01 6 88854765 88854765 T A CNR1 Missense_Mutation p.N77Y 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.907) TCGA-05-4396-01 7 114304371 114304371 G T FOXP2 Missense_Mutation p.G653V 0.40 deleterious(0.03) benign(0.003) TCGA-05-4396-01 7 116918172 116918172 T C WNT2 3'UTR 0.42 TCGA-05-4396-01 7 117267710 117267710 T A CFTR Missense_Mutation p.D1201E 0.35 tolerated(0.63) benign(0.001) TCGA-05-4396-01 7 117375073 117375073 G C CTTNBP2 Missense_Mutation p.S1257C 0.43 deleterious(0) possibly_damaging(0.841) TCGA-05-4396-01 7 128478663 128478663 G A FLNC Missense_Mutation p.G406D 0.35 deleterious(0) probably_damaging(1) TCGA-05-4396-01 7 131864552 131864552 C A PLXNA4 Silent p.V1256V 0.36 TCGA-05-4396-01 7 138603427 138603427 C G KIAA1549 Missense_Mutation p.W315C 0.34 deleterious(0.02) benign(0.332) TCGA-05-4396-01 7 141800678 141800678 G T MGAM Missense_Mutation p.G1755W 0.43 deleterious(0) probably_damaging(0.989) TCGA-05-4396-01 7 142459785 142459785 G A PRSS1 Missense_Mutation p.A121T 0.40 tolerated(0.11) benign(0.001) TCGA-05-4396-01 7 148112658 148112658 C T CNTNAP2 Missense_Mutation p.P1316S 0.34 tolerated(0.31) benign(0.01) TCGA-05-4396-01 7 149474054 149474054 C - ZNF467 5'Flank 0.28 TCGA-05-4396-01 7 150555928 150555928 G A AOC1 Missense_Mutation p.V550I 0.40 tolerated(0.1) benign(0.253) TCGA-05-4396-01 7 17843055 17843055 T A SNX13 Missense_Mutation p.Q738L 0.37 tolerated(0.07) benign(0.117) TCGA-05-4396-01 7 20824767 20824767 G A SP8 Silent p.A223A 0.71 TCGA-05-4396-01 7 27147548 27147548 G A HOXA3 Missense_Mutation p.L440F 0.37 deleterious(0) probably_damaging(0.961) TCGA-05-4396-01 7 2749348 2749348 G A AMZ1 Silent p.A282A 0.30 TCGA-05-4396-01 7 27827104 27827104 T A TAX1BP1 Nonsense_Mutation p.L307* 0.44 TCGA-05-4396-01 7 31378296 31378296 G T NEUROD6 Missense_Mutation p.A196D 0.43 tolerated(0.62) benign(0.011) TCGA-05-4396-01 7 50513930 50513930 C A FIGNL1 Missense_Mutation p.Q352H 0.38 tolerated(0.12) benign(0.003) TCGA-05-4396-01 7 80387660 80387660 G T SEMA3C Missense_Mutation p.P544T 0.39 deleterious(0.04) probably_damaging(0.998) TCGA-05-4396-01 7 81372699 81372699 G C HGF Missense_Mutation p.R279G 0.46 deleterious(0.02) benign(0.071) TCGA-05-4396-01 7 87082321 87082321 G A ABCB4 Nonsense_Mutation p.R159* 0.35 TCGA-05-4396-01 7 89929315 89929315 G T C7orf63 Missense_Mutation p.L664F 0.47 deleterious(0) probably_damaging(0.979) TCGA-05-4396-01 8 110592123 110592123 C T SYBU Silent p.L213L 0.38 TCGA-05-4396-01 8 127569573 127569573 G C FAM84B Missense_Mutation p.P21R 0.11 deleterious(0) probably_damaging(0.999) TCGA-05-4396-01 8 136561009 136561009 A C KHDRBS3 Silent p.R113R 0.34 TCGA-05-4396-01 8 139629183 139629183 C A COL22A1 Missense_Mutation p.G1282C 0.33 unknown(0) TCGA-05-4396-01 8 143623435 143623435 G T BAI1 Silent p.P1280P 0.39 TCGA-05-4396-01 8 144733268 144733268 G T ZNF623 Missense_Mutation p.G409V 0.28 deleterious(0) probably_damaging(0.998) TCGA-05-4396-01 8 145583398 145583398 G T SLC52A2 Silent p.R82R 0.53 TCGA-05-4396-01 8 2092878 2092878 C A MYOM2 Silent p.P1457P 0.41 TCGA-05-4396-01 8 22938829 22938829 G T RP11-875O11.2 RNA 0.39 TCGA-05-4396-01 8 48748977 48748977 G A PRKDC Missense_Mutation p.L2624F 0.35 benign(0.02) TCGA-05-4396-01 8 61496839 61496839 G T RAB2A Missense_Mutation p.D87Y 0.39 deleterious(0) probably_damaging(1) TCGA-05-4396-01 8 75929613 75929613 G T CRISPLD1 Missense_Mutation p.W352L 0.40 tolerated(1) probably_damaging(1) TCGA-05-4396-01 8 7721059 7721059 G T SPAG11A 3'UTR 0.12 TCGA-05-4396-01 8 77763160 77763160 G T ZFHX4 Nonsense_Mutation p.E1335* 0.29 TCGA-05-4396-01 8 7806690 7806690 C G ZNF705B Missense_Mutation p.Q18E 0.67 tolerated(0.05) benign(0.103) TCGA-05-4396-01 8 86574511 86574511 G A REXO1L1P Missense_Mutation p.P406S 0.11 tolerated(0.11) benign(0.082) TCGA-05-4396-01 9 108120644 108120644 G T SLC44A1 Missense_Mutation p.M230I 0.37 deleterious(0.05) benign(0.08) TCGA-05-4396-01 9 119770371 119770371 C A ASTN2 Nonsense_Mutation p.G480* 0.34 TCGA-05-4396-01 9 120475790 120475790 G C TLR4 Missense_Mutation p.A462P 0.42 tolerated(0.27) probably_damaging(0.928) TCGA-05-4396-01 9 130579387 130579387 C T ENG Intron 0.46 TCGA-05-4396-01 9 131039032 131039032 C G SWI5 Missense_Mutation p.P142A 0.37 deleterious(0) probably_damaging(0.956) TCGA-05-4396-01 9 131403138 131403138 C T WDR34 Silent p.T89T 0.36 TCGA-05-4396-01 9 132397750 132397750 G A NTMT1 3'UTR 0.38 TCGA-05-4396-01 9 137772704 137772704 G T FCN2 Missense_Mutation p.A13S 0.49 tolerated(0.4) benign(0.005) TCGA-05-4396-01 9 139960771 139960771 G C SAPCD2 Silent p.P209P 0.14 TCGA-05-4396-01 9 17464545 17464545 A G CNTLN Missense_Mutation p.D1152G 0.63 deleterious(0.01) probably_damaging(0.988) TCGA-05-4396-01 9 32634374 32634374 C T TAF1L Missense_Mutation p.E402K 0.40 tolerated(0.23) benign(0.001) TCGA-05-4396-01 9 43625677 43625677 C - SPATA31A6 Frame_Shift_Del p.E1004Rfs*111 0.19 TCGA-05-4396-01 9 5924840 5924840 C A KIAA2026 Missense_Mutation p.R835L 0.55 deleterious(0) probably_damaging(0.997) TCGA-05-4396-01 X 101623759 101623759 C A NXF2B Silent p.A201A 0.35 TCGA-05-4396-01 X 109764329 109764329 G T TDGF1P3 RNA 0.72 TCGA-05-4396-01 X 123217337 123217337 G C STAG2 Missense_Mutation p.L997F 0.75 deleterious(0) possibly_damaging(0.881) TCGA-05-4396-01 X 123554306 123554306 G C TENM1 Missense_Mutation p.Q1613E 0.88 deleterious(0.03) benign(0.186) TCGA-05-4396-01 X 123838919 123838919 G C TENM1 Missense_Mutation p.A320G 0.83 deleterious(0) probably_damaging(0.934) TCGA-05-4396-01 X 127185886 127185886 T G ACTRT1 Missense_Mutation p.K100N 0.61 tolerated(0.23) benign(0.001) TCGA-05-4396-01 X 133378844 133378844 G A CCDC160 Missense_Mutation p.R5K 0.95 tolerated(0.17) benign(0.14) TCGA-05-4396-01 X 134856855 134856855 G T CT45A1 3'UTR 0.12 TCGA-05-4396-01 X 151818273 151818273 G A GABRQ Missense_Mutation p.E227K 0.83 tolerated(0.66) benign(0.034) TCGA-05-4396-01 X 18194094 18194094 G T BEND2 Missense_Mutation p.P584T 0.78 tolerated(1) benign(0.001) TCGA-05-4396-01 X 27998808 27998808 C T DCAF8L1 Missense_Mutation p.G215D 0.87 deleterious(0) possibly_damaging(0.67) TCGA-05-4396-01 X 30269076 30269076 C G MAGEB1 Missense_Mutation p.R156G 0.17 tolerated(0.14) possibly_damaging(0.518) TCGA-05-4396-01 X 41025463 41025463 G T USP9X Missense_Mutation p.W775L 0.81 deleterious(0) probably_damaging(0.953) TCGA-05-4396-01 X 53227964 53227964 C A KDM5C Nonsense_Mutation p.E784* 0.75 TCGA-05-4396-01 X 5821843 5821843 C A NLGN4X Missense_Mutation p.Q292H 0.82 deleterious(0.01) probably_damaging(0.976) TCGA-05-4396-01 X 63411863 63411863 C A AMER1 Missense_Mutation p.G435V 0.76 tolerated(0.1) benign(0.102) TCGA-05-4396-01 X 73960673 73960673 C A KIAA2022 Missense_Mutation p.G1240V 0.73 tolerated(0.34) benign(0.086) TCGA-05-4396-01 X 73960674 73960674 C A KIAA2022 Missense_Mutation p.G1240C 0.73 deleterious(0.01) probably_damaging(0.931) TCGA-05-4397-01 10 102255201 102255201 C A SEC31B Missense_Mutation p.A805S 0.68 tolerated(0.16) benign(0.023) TCGA-05-4397-01 10 106075557 106075557 C A ITPRIP Missense_Mutation p.A85S 0.75 tolerated(0.55) benign(0.008) TCGA-05-4397-01 10 108431096 108431096 C A SORCS1 Missense_Mutation p.R696S 0.68 deleterious(0) benign(0.149) TCGA-05-4397-01 10 115356858 115356858 A G NRAP Missense_Mutation p.M1473T 0.76 tolerated(0.46) benign(0.005) TCGA-05-4397-01 10 118313238 118313238 G A PNLIP Splice_Site p.X154_splice 0.79 TCGA-05-4397-01 10 124909497 124909497 G T HMX2 Missense_Mutation p.S227I 0.94 deleterious(0.03) benign(0.002) TCGA-05-4397-01 10 125801930 125801930 C A CHST15 Missense_Mutation p.R307L 0.65 tolerated(0.06) benign(0.397) TCGA-05-4397-01 10 1279783 1279783 G - ADARB2 Frame_Shift_Del p.R456Gfs*13 0.38 TCGA-05-4397-01 10 13154609 13154609 G T OPTN Missense_Mutation p.D176Y 0.40 deleterious(0) possibly_damaging(0.711) TCGA-05-4397-01 10 135086366 135086366 T - ADAM8 Frame_Shift_Del p.Q214Rfs*17 0.60 TCGA-05-4397-01 10 21074756 21074756 C A NEBL Missense_Mutation p.D989Y 0.37 deleterious(0) probably_damaging(0.997) TCGA-05-4397-01 10 28905206 28905206 C G WAC Nonsense_Mutation p.S554* 0.44 TCGA-05-4397-01 10 38407837 38407837 C G ZNF37A 3'UTR 0.37 TCGA-05-4397-01 10 43650780 43650780 A T CSGALNACT2 Silent p.L61L 0.51 TCGA-05-4397-01 10 44874113 44874113 G A CXCL12 Nonsense_Mutation p.Q80* 0.15 TCGA-05-4397-01 10 46248088 46248088 G C FAM21C Silent p.S352S 0.37 TCGA-05-4397-01 10 48371464 48371464 A C ZNF488 Missense_Mutation p.K311T 0.38 deleterious(0.05) benign(0.007) TCGA-05-4397-01 10 48771317 48771317 G C PTPN20B Missense_Mutation p.P194R 0.67 deleterious(0) probably_damaging(0.999) TCGA-05-4397-01 10 49379103 49379103 C A FRMPD2 Silent p.G1124G 0.38 TCGA-05-4397-01 10 50690785 50690785 T A ERCC6 Missense_Mutation p.Q706L 0.34 deleterious(0) probably_damaging(0.917) TCGA-05-4397-01 10 50857656 50857656 A T CHAT Missense_Mutation p.L495F 0.35 tolerated(0.06) probably_damaging(0.974) TCGA-05-4397-01 10 52066816 52066816 T A SGMS1 3'UTR 0.26 TCGA-05-4397-01 10 58120979 58120979 C T ZWINT Missense_Mutation p.E7K 0.64 tolerated_low_confidence(0.52) unknown(0) TCGA-05-4397-01 10 62023774 62023774 C G ANK3 Missense_Mutation p.G173A 0.67 probably_damaging(0.999) TCGA-05-4397-01 10 64968029 64968029 G T JMJD1C Missense_Mutation p.Q1134K 0.74 tolerated(0.13) possibly_damaging(0.55) TCGA-05-4397-01 10 69793920 69793920 G A HERC4 Nonsense_Mutation p.Q163* 0.32 TCGA-05-4397-01 10 81373600 81373600 G A SFTPA1 Missense_Mutation p.G175S 0.60 deleterious(0) probably_damaging(0.996) TCGA-05-4397-01 10 858953 858961 CCTCTGGTC - LARP4B In_Frame_Del p.D708_R710del 0.46 TCGA-05-4397-01 10 92675309 92675309 G C ANKRD1 Missense_Mutation p.I280M 0.12 tolerated(0.14) benign(0.399) TCGA-05-4397-01 10 99126871 99126871 G C RRP12 Missense_Mutation p.L992V 0.75 tolerated(0.11) benign(0.032) TCGA-05-4397-01 11 102206810 102206810 G A BIRC3 Missense_Mutation p.D480N 0.48 tolerated(0.1) benign(0.026) TCGA-05-4397-01 11 102667841 102667841 C G MMP1 Missense_Mutation p.E135Q 0.42 tolerated(0.25) benign(0.055) TCGA-05-4397-01 11 110454334 110454334 G C ARHGAP20 Missense_Mutation p.P515A 0.12 deleterious(0.03) probably_damaging(0.916) TCGA-05-4397-01 11 115069138 115069138 G C CADM1 Intron 0.19 TCGA-05-4397-01 11 118243384 118243384 G T UBE4A Nonsense_Mutation p.E242* 0.48 TCGA-05-4397-01 11 118509945 118509945 G A PHLDB1 Silent p.P904P 0.45 TCGA-05-4397-01 11 118772871 118772871 G C BCL9L Nonsense_Mutation p.Y527* 0.37 TCGA-05-4397-01 11 119144584 119144584 A T CBL Silent p.I199I 0.30 TCGA-05-4397-01 11 120300499 120300499 C A ARHGEF12 Missense_Mutation p.Q248K 0.32 deleterious(0.02) possibly_damaging(0.582) TCGA-05-4397-01 11 123598298 123598298 G A ZNF202 Missense_Mutation p.P280S 0.17 tolerated(0.11) possibly_damaging(0.543) TCGA-05-4397-01 11 12376383 12376383 A G MICALCL Missense_Mutation p.R628G 0.32 deleterious(0) probably_damaging(0.971) TCGA-05-4397-01 11 123847636 123847636 A T OR10S1 Missense_Mutation p.C255S 0.38 deleterious(0) probably_damaging(0.999) TCGA-05-4397-01 11 124740583 124740583 G T ROBO3 Missense_Mutation p.S331I 0.50 deleterious(0.02) possibly_damaging(0.719) TCGA-05-4397-01 11 128786320 128786320 C A KCNJ5 Silent p.A318A 0.58 TCGA-05-4397-01 11 1467122 1467122 C - BRSK2 Frame_Shift_Del p.Q451Sfs*26 0.53 TCGA-05-4397-01 11 15134045 15134045 G T INSC Silent p.A10A 0.31 TCGA-05-4397-01 11 15197587 15197587 C T INSC Silent p.S166S 0.59 TCGA-05-4397-01 11 17491753 17491753 G A ABCC8 Missense_Mutation p.H103Y 0.20 deleterious(0) benign(0.041) TCGA-05-4397-01 11 1774740 1774740 C T CTSD Missense_Mutation p.R411H 0.39 tolerated(0.06) benign(0.35) TCGA-05-4397-01 11 18057531 18057531 T G TPH1 Silent p.P92P 0.45 TCGA-05-4397-01 11 18541090 18541090 G C TSG101 Missense_Mutation p.L35V 0.36 deleterious(0) probably_damaging(0.997) TCGA-05-4397-01 11 1861882 1861882 T A TNNI2 Missense_Mutation p.V61E 0.36 deleterious(0.01) possibly_damaging(0.555) TCGA-05-4397-01 11 26463463 26463463 A C ANO3 Splice_Site p.X16_splice 0.42 TCGA-05-4397-01 11 27078769 27078769 G A BBOX1 Missense_Mutation p.E81K 0.09 tolerated(0.45) benign(0) TCGA-05-4397-01 11 30034042 30034042 G T KCNA4 Missense_Mutation p.H62N 0.38 tolerated_low_confidence(1) unknown(0) TCGA-05-4397-01 11 31811521 31811521 A G PAX6 Silent p.S424S 0.39 TCGA-05-4397-01 11 35211479 35211479 G A CD44 Silent p.V178V 0.45 TCGA-05-4397-01 11 36595976 36595976 C G RAG1 Missense_Mutation p.H374Q 0.44 tolerated_low_confidence(0.68) benign(0.001) TCGA-05-4397-01 11 45245962 45245962 C G PRDM11 Missense_Mutation p.L313V 0.43 deleterious_low_confidence(0.02) possibly_damaging(0.668) TCGA-05-4397-01 11 45672310 45672310 T C CHST1 Missense_Mutation p.Y55C 0.48 tolerated(0.16) possibly_damaging(0.525) TCGA-05-4397-01 11 46896534 46896534 T C LRP4 Missense_Mutation p.D1349G 0.32 tolerated(0.12) benign(0.028) TCGA-05-4397-01 11 47330834 47330834 A C MADD Missense_Mutation p.K1312Q 0.41 deleterious(0) probably_damaging(0.998) TCGA-05-4397-01 11 48285662 48285662 T - OR4X1 Frame_Shift_Del p.F84Lfs*30 0.32 TCGA-05-4397-01 11 49227674 49227674 T A FOLH1 Missense_Mutation p.N57Y 0.44 tolerated(0.85) benign(0.059) TCGA-05-4397-01 11 5221647 5221647 C A OR51V1 Missense_Mutation p.W95L 0.52 tolerated(0.15) benign(0.084) TCGA-05-4397-01 11 55579396 55579396 G A OR5L1 Missense_Mutation p.G152R 0.37 deleterious(0) probably_damaging(0.976) TCGA-05-4397-01 11 55735206 55735206 G T OR10AG1 Missense_Mutation p.A245E 0.54 deleterious(0) benign(0.345) TCGA-05-4397-01 11 56310201 56310201 C G OR5M11 Missense_Mutation p.C178S 0.50 deleterious(0.02) possibly_damaging(0.777) TCGA-05-4397-01 11 57114659 57114659 G T P2RX3 Nonsense_Mutation p.E109* 0.52 TCGA-05-4397-01 11 57569422 57569422 C T CTNND1 Missense_Mutation p.H392Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-05-4397-01 11 5799839 5799839 C T OR52N5 Nonsense_Mutation p.W9* 0.29 TCGA-05-4397-01 11 58275014 58275014 C G OR5B21 Missense_Mutation p.D189H 0.19 deleterious_low_confidence(0) benign(0.373) TCGA-05-4397-01 11 5905755 5905755 C T OR52E4 Missense_Mutation p.S78F 0.45 deleterious(0) possibly_damaging(0.724) TCGA-05-4397-01 11 59190327 59190327 C G OR5A2 Missense_Mutation p.G34R 0.46 tolerated(0.35) possibly_damaging(0.873) TCGA-05-4397-01 11 59283042 59283042 G T OR4D9 Silent p.T219T 0.35 TCGA-05-4397-01 11 60543111 60543111 G T MS4A15 Missense_Mutation p.D216Y 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-05-4397-01 11 64662439 64662439 C A ATG2A 3'UTR 0.35 TCGA-05-4397-01 11 64764504 64764504 C G BATF2 5'UTR 0.40 TCGA-05-4397-01 11 65384435 65384435 G - PCNXL3 Frame_Shift_Del p.E100Sfs*21 0.42 TCGA-05-4397-01 11 67938611 67938611 G A SUV420H1 Missense_Mutation p.S283L 0.52 tolerated(0.06) possibly_damaging(0.655) TCGA-05-4397-01 11 6867641 6867641 C A OR10A5 Missense_Mutation p.S243Y 0.36 deleterious(0) probably_damaging(0.955) TCGA-05-4397-01 11 6977119 6977119 G T ZNF215 Missense_Mutation p.S304I 0.34 tolerated(0.13) benign(0.312) TCGA-05-4397-01 11 7091678 7091678 A T NLRP14 Missense_Mutation p.Q1046L 0.39 deleterious(0.01) possibly_damaging(0.451) TCGA-05-4397-01 11 75316665 75316665 C A MAP6 Intron 0.38 TCGA-05-4397-01 11 75428947 75428947 C T MOGAT2 Missense_Mutation p.A5V 0.16 deleterious(0.04) possibly_damaging(0.465) TCGA-05-4397-01 11 76709817 76709817 G C ACER3 Missense_Mutation p.G150A 0.33 tolerated(0.57) possibly_damaging(0.665) TCGA-05-4397-01 11 7949817 7949817 G A OR10A6 Silent p.N131N 0.44 TCGA-05-4397-01 11 8122429 8122429 G A TUB Silent p.E479E 0.42 TCGA-05-4397-01 11 84027970 84027971 - A DLG2 Intron 0.37 TCGA-05-4397-01 11 89537464 89537464 T A TRIM49 Silent p.S58S 0.27 TCGA-05-4397-01 11 89537465 89537465 G T TRIM49 Nonsense_Mutation p.S58* 0.27 TCGA-05-4397-01 11 92531208 92531208 C A FAT3 Missense_Mutation p.Q1677K 0.32 probably_damaging(0.966) TCGA-05-4397-01 11 92531578 92531578 C A FAT3 Missense_Mutation p.A1800D 0.45 probably_damaging(1) TCGA-05-4397-01 11 92616156 92616156 G T FAT3 Missense_Mutation p.K4178N 0.41 possibly_damaging(0.653) TCGA-05-4397-01 12 100042298 100042298 G C FAM71C Missense_Mutation p.E116Q 0.08 deleterious(0) probably_damaging(0.928) TCGA-05-4397-01 12 100926249 100926249 A T NR1H4 Missense_Mutation p.R163S 0.40 tolerated(0.06) probably_damaging(0.913) TCGA-05-4397-01 12 10339082 10339082 C T TMEM52B Silent p.C47C 0.13 TCGA-05-4397-01 12 107279815 107279815 C G RIC8B 3'UTR 0.45 TCGA-05-4397-01 12 108618519 108618519 G T WSCD2 Missense_Mutation p.G229V 0.44 tolerated(0.08) probably_damaging(0.998) TCGA-05-4397-01 12 108685692 108685692 G T CMKLR1 Missense_Mutation p.H350N 0.55 tolerated(0.16) benign(0.016) TCGA-05-4397-01 12 108686330 108686330 C A CMKLR1 Missense_Mutation p.R137L 0.37 deleterious(0) probably_damaging(1) TCGA-05-4397-01 12 110354442 110354442 A G TCHP 3'UTR 0.45 TCGA-05-4397-01 12 113357227 113357227 G A OAS1 Intron 0.41 TCGA-05-4397-01 12 1137189 1137189 G T ERC1 Silent p.G40G 0.16 TCGA-05-4397-01 12 114384275 114384275 C A RBM19 Missense_Mutation p.R471S 0.36 deleterious(0) probably_damaging(1) TCGA-05-4397-01 12 117657886 117657886 C A NOS1 Silent p.R1422R 0.46 TCGA-05-4397-01 12 120596319 120596319 C A GCN1L1 Silent p.A950A 0.30 TCGA-05-4397-01 12 121442169 121442169 C T C12orf43 Silent p.K192K 0.41 TCGA-05-4397-01 12 123341206 123341206 A G HIP1R Missense_Mutation p.K518R 0.36 tolerated(0.24) benign(0.007) TCGA-05-4397-01 12 124360011 124360011 T C DNAH10 Silent p.Y2606Y 0.40 TCGA-05-4397-01 12 126137174 126137174 A T TMEM132B Missense_Mutation p.Q696L 0.31 deleterious(0) benign(0.108) TCGA-05-4397-01 12 128899611 128899611 C A TMEM132C Silent p.V140V 0.17 TCGA-05-4397-01 12 130912820 130912820 G A RIMBP2 Silent p.D755D 0.31 TCGA-05-4397-01 12 130919333 130919333 C A RIMBP2 Missense_Mutation p.K716N 0.45 deleterious(0.02) benign(0.174) TCGA-05-4397-01 12 133779191 133779191 A T ZNF268 Missense_Mutation p.N307Y 0.56 deleterious(0.02) benign(0.054) TCGA-05-4397-01 12 14798242 14798242 A G GUCY2C Missense_Mutation p.L573S 0.22 deleterious(0) probably_damaging(0.999) TCGA-05-4397-01 12 14993793 14993793 G C ART4 Missense_Mutation p.P147A 0.18 tolerated(0.1) benign(0.169) TCGA-05-4397-01 12 15699587 15699587 A G PTPRO Missense_Mutation p.D750G 0.58 tolerated(0.13) possibly_damaging(0.524) TCGA-05-4397-01 12 20874895 20874895 C A SLCO1C1 Silent p.S311S 0.47 TCGA-05-4397-01 12 26714783 26714784 - A ITPR2 Frame_Shift_Ins p.W1578Lfs*12 0.40 TCGA-05-4397-01 12 26784866 26784866 C A ITPR2 Missense_Mutation p.G956V 0.44 tolerated(0.35) benign(0.002) TCGA-05-4397-01 12 32458910 32458910 G T BICD1 Missense_Mutation p.G287C 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-05-4397-01 12 33532835 33532835 G T SYT10 Silent p.R478R 0.36 TCGA-05-4397-01 12 34179903 34179903 A G ALG10 3'UTR 0.36 TCGA-05-4397-01 12 41418949 41418949 C A CNTN1 Intron 0.40 TCGA-05-4397-01 12 45744489 45744489 G T ANO6 Silent p.R286R 0.34 TCGA-05-4397-01 12 45797234 45797234 G - ANO6 Frame_Shift_Del p.G620Afs*6 0.34 TCGA-05-4397-01 12 46211516 46211516 T A ARID2 Nonsense_Mutation p.L161* 0.47 TCGA-05-4397-01 12 48391491 48391491 C A COL2A1 Splice_Site p.X144_splice 0.47 TCGA-05-4397-01 12 49495285 49495285 G C LMBR1L Missense_Mutation p.I326M 0.47 tolerated(0.06) possibly_damaging(0.825) TCGA-05-4397-01 12 52283238 52283238 G C ANKRD33 Silent p.A203A 0.37 TCGA-05-4397-01 12 52451017 52451017 G T NR4A1 Missense_Mutation p.E458D 0.28 deleterious(0) probably_damaging(0.985) TCGA-05-4397-01 12 53295812 53295812 C G KRT8 Missense_Mutation p.W151C 0.36 deleterious(0) probably_damaging(0.978) TCGA-05-4397-01 12 54379159 54379159 T C HOXC10 Missense_Mutation p.F39S 0.43 deleterious(0.02) benign(0.014) TCGA-05-4397-01 12 55715172 55715172 A G OR6C1 Silent p.K263K 0.43 TCGA-05-4397-01 12 55759747 55759747 C A OR6C75 Missense_Mutation p.P285T 0.37 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-05-4397-01 12 5603701 5603701 C A NTF3 Missense_Mutation p.S120R 0.48 deleterious(0) probably_damaging(0.969) TCGA-05-4397-01 12 56359817 56359817 C T PMEL 5'Flank 0.42 TCGA-05-4397-01 12 57859454 57859454 C G GLI1 Missense_Mutation p.S200C 0.46 deleterious(0.02) benign(0.007) TCGA-05-4397-01 12 69218142 69218142 G T MDM2 Splice_Site p.X120_splice 0.30 TCGA-05-4397-01 12 72266764 72266764 G A TBC1D15 Missense_Mutation p.S62N 0.40 tolerated(1) benign(0.014) TCGA-05-4397-01 12 7636212 7636212 C A CD163 Nonsense_Mutation p.G947* 0.19 TCGA-05-4397-01 12 76424431 76424431 G C PHLDA1 Missense_Mutation p.S364W 0.31 deleterious_low_confidence(0.02) unknown(0) TCGA-05-4397-01 12 76739974 76739974 A T BBS10 Silent p.G597G 0.47 TCGA-05-4397-01 12 81741530 81741530 C - PPFIA2 Frame_Shift_Del p.E672Nfs*17 0.23 TCGA-05-4397-01 12 81762625 81762625 C G PPFIA2 Missense_Mutation p.R454T 0.39 deleterious(0) probably_damaging(0.978) TCGA-05-4397-01 12 85450738 85450738 G A LRRIQ1 Missense_Mutation p.D723N 0.32 tolerated(0.25) benign(0.018) TCGA-05-4397-01 12 8628815 8628815 C A CLEC6A Missense_Mutation p.T155K 0.41 deleterious(0) possibly_damaging(0.76) TCGA-05-4397-01 12 97087505 97087505 G T C12orf55 Silent p.L2090L 0.28 TCGA-05-4397-01 12 98927517 98927517 C G TMPO Missense_Mutation p.F494L 0.22 tolerated_low_confidence(1) benign(0.002) TCGA-05-4397-01 13 101712240 101712240 G A NALCN Missense_Mutation p.P1612L 0.29 deleterious(0.04) benign(0.008) TCGA-05-4397-01 13 101833456 101833456 T C NALCN Intron 0.21 TCGA-05-4397-01 13 102375099 102375099 C A FGF14 3'UTR 0.61 TCGA-05-4397-01 13 103492110 103492110 C T BIVM-ERCC5 Silent p.F441F 0.16 TCGA-05-4397-01 13 108862284 108862284 C A LIG4 Nonsense_Mutation p.E445* 0.35 TCGA-05-4397-01 13 109445881 109445881 C A MYO16 Missense_Mutation p.L190M 0.53 tolerated(0.13) possibly_damaging(0.656) TCGA-05-4397-01 13 109535456 109535456 C A MYO16 Missense_Mutation p.P470H 0.33 deleterious(0.01) probably_damaging(1) TCGA-05-4397-01 13 110813651 110813651 C A COL4A1 Missense_Mutation p.V1510L 0.36 unknown(0) TCGA-05-4397-01 13 111009827 111009827 G A COL4A2 Silent p.K36K 0.13 TCGA-05-4397-01 13 115002123 115002123 C T CDC16 Nonsense_Mutation p.Q18* 0.52 TCGA-05-4397-01 13 29608211 29608211 C A MTUS2 Missense_Mutation p.P809T 0.64 tolerated(0.12) possibly_damaging(0.808) TCGA-05-4397-01 13 29855914 29855914 C T MTUS2 Silent p.A916A 0.93 TCGA-05-4397-01 13 32914679 32914679 G A BRCA2 Missense_Mutation p.G2063R 0.78 deleterious(0) probably_damaging(1) TCGA-05-4397-01 13 49033954 49033954 C G RB1 Missense_Mutation p.D697E 0.71 deleterious(0) probably_damaging(0.991) TCGA-05-4397-01 13 61987001 61987001 T A PCDH20 Missense_Mutation p.T411S 0.75 deleterious(0.01) possibly_damaging(0.685) TCGA-05-4397-01 13 70514361 70514361 C A KLHL1 Missense_Mutation p.L275F 0.32 deleterious(0.02) probably_damaging(0.992) TCGA-05-4397-01 13 77663032 77663032 C G MYCBP2 Missense_Mutation p.E3516Q 0.36 probably_damaging(0.979) TCGA-05-4397-01 13 78492680 78492680 C A EDNRB Missense_Mutation p.R100L 0.52 tolerated_low_confidence(0.22) benign(0.004) TCGA-05-4397-01 14 101200812 101200812 G T DLK1 Missense_Mutation p.C244F 0.49 deleterious(0) probably_damaging(0.997) TCGA-05-4397-01 14 101349375 101349375 G T RTL1 Missense_Mutation p.S584Y 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-05-4397-01 14 102900761 102900761 G T TECPR2 Missense_Mutation p.G536V 0.55 deleterious_low_confidence(0.01) benign(0.15) TCGA-05-4397-01 14 106092257 106092257 G T IGHG4 Silent p.G49G 0.21 TCGA-05-4397-01 14 106791255 106791255 C A IGHV3-30 Missense_Mutation p.G34V 0.19 deleterious_low_confidence(0.01) probably_damaging(0.972) TCGA-05-4397-01 14 20216413 20216413 A G OR4Q3 Missense_Mutation p.Y276C 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-05-4397-01 14 20612581 20612581 C A OR4N5 Silent p.S229S 0.43 TCGA-05-4397-01 14 21469627 21469627 C T SLC39A2 Silent p.T273T 0.35 TCGA-05-4397-01 14 21969067 21969067 G C METTL3 Silent p.L368L 0.33 TCGA-05-4397-01 14 22580304 22580304 T A TRAV25 5'UTR 0.48 TCGA-05-4397-01 14 22987821 22987821 G A TRAJ25 Silent p.G11G 0.39 TCGA-05-4397-01 14 23079849 23079849 G A ABHD4 Missense_Mutation p.D342N 0.06 tolerated(0.07) possibly_damaging(0.456) TCGA-05-4397-01 14 23504054 23504054 C A PSMB5 Missense_Mutation p.V13L 0.53 tolerated(0.77) benign(0.417) TCGA-05-4397-01 14 23872969 23872969 G A MYH6 Missense_Mutation p.H252Y 0.36 deleterious(0.02) probably_damaging(0.98) TCGA-05-4397-01 14 23872970 23872970 G T MYH6 Silent p.I251I 0.39 TCGA-05-4397-01 14 24567693 24567693 T C PCK2 Missense_Mutation p.M157T 0.47 deleterious(0) possibly_damaging(0.521) TCGA-05-4397-01 14 26917553 26917553 G A NOVA1 Missense_Mutation p.T379M 0.41 tolerated(0.14) benign(0.066) TCGA-05-4397-01 14 32562802 32562802 A G ARHGAP5 Missense_Mutation p.N976S 0.33 tolerated(0.48) benign(0.206) TCGA-05-4397-01 14 36147196 36147196 C G RALGAPA1 Missense_Mutation p.E1022D 0.43 tolerated(0.62) benign(0.02) TCGA-05-4397-01 14 47426604 47426604 C A MDGA2 Missense_Mutation p.A688S 0.48 tolerated(0.85) benign(0.019) TCGA-05-4397-01 14 52471094 52471094 G A C14orf166 Missense_Mutation p.E199K 0.18 tolerated(0.24) benign(0.257) TCGA-05-4397-01 14 52735298 52735298 C T PTGDR Nonsense_Mutation p.Q256* 0.44 TCGA-05-4397-01 14 57736068 57736068 A T AP5M1 Missense_Mutation p.E12D 0.32 tolerated(0.28) benign(0.002) TCGA-05-4397-01 14 58820404 58820404 G A ARID4A Missense_Mutation p.E562K 0.50 deleterious(0.04) benign(0.174) TCGA-05-4397-01 14 59112838 59112838 G A DACT1 Silent p.E499E 0.39 TCGA-05-4397-01 14 60903733 60903733 C A C14orf39 Missense_Mutation p.G532C 0.41 deleterious(0) benign(0.418) TCGA-05-4397-01 14 68159752 68159752 C T RDH11 Missense_Mutation p.G31E 0.26 deleterious(0.02) benign(0.079) TCGA-05-4397-01 14 69529104 69529104 G A DCAF5 Silent p.I357I 0.20 TCGA-05-4397-01 14 74969961 74969961 A T LTBP2 Missense_Mutation p.W1617R 0.40 deleterious(0) probably_damaging(1) TCGA-05-4397-01 14 75295991 75295991 A G YLPM1 Missense_Mutation p.Y2080C 0.33 probably_damaging(0.936) TCGA-05-4397-01 14 75360126 75360126 G - DLST Frame_Shift_Del 0.33 TCGA-05-4397-01 14 77605913 77605913 G T ZDHHC22 Missense_Mutation p.L57I 0.25 tolerated(0.34) possibly_damaging(0.631) TCGA-05-4397-01 14 89093342 89093342 G T EML5 Missense_Mutation p.A1527E 0.39 deleterious(0.01) probably_damaging(0.972) TCGA-05-4397-01 14 90429553 90429553 C T TDP1 Missense_Mutation p.S32F 0.46 tolerated_low_confidence(0.29) benign(0.004) TCGA-05-4397-01 14 93142837 93142837 G T RIN3 Missense_Mutation p.D785Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-05-4397-01 14 94464535 94464535 G A LINC00521 RNA 0.28 TCGA-05-4397-01 14 94464536 94464536 G T LINC00521 RNA 0.29 TCGA-05-4397-01 14 95662857 95662857 T A CLMN Missense_Mutation p.S896C 0.37 tolerated(0.19) benign(0.001) TCGA-05-4397-01 15 20489417 20489417 C T CHEK2P2 RNA 0.04 TCGA-05-4397-01 15 22369125 22369125 G T OR4M2 Missense_Mutation p.V184F 0.18 deleterious(0.03) probably_damaging(0.985) TCGA-05-4397-01 15 22955225 22955225 A G CYFIP1 Missense_Mutation p.K540R 0.36 tolerated(0.12) possibly_damaging(0.756) TCGA-05-4397-01 15 25486832 25486832 G C SNORD115-40 5'Flank 0.74 TCGA-05-4397-01 15 30010302 30010302 T G TJP1 Missense_Mutation p.K1299N 0.80 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-05-4397-01 15 34356223 34356223 C G CHRM5 Silent p.V435V 0.08 TCGA-05-4397-01 15 34396295 34396295 A G PGBD4 Silent p.G521G 0.92 TCGA-05-4397-01 15 40659748 40659748 G A DISP2 Missense_Mutation p.E479K 0.39 tolerated(0.83) benign(0.002) TCGA-05-4397-01 15 45454558 45454558 C G DUOX1 Missense_Mutation p.Q1411E 0.67 deleterious(0.03) benign(0.216) TCGA-05-4397-01 15 45559991 45559991 G T SLC28A2 Missense_Mutation p.R399L 0.64 tolerated(0.51) benign(0.134) TCGA-05-4397-01 15 59974604 59974604 C G BNIP2 Intron 0.36 TCGA-05-4397-01 15 62209737 62209737 C T VPS13C Missense_Mutation p.E2620K 0.20 tolerated(0.23) benign(0.143) TCGA-05-4397-01 15 64365103 64365103 A G FAM96A 3'UTR 0.48 TCGA-05-4397-01 15 65677328 65677328 C A IGDCC4 Silent p.T1102T 0.40 TCGA-05-4397-01 15 74425680 74425680 G T ISLR2 Missense_Mutation p.W195C 0.41 deleterious(0) probably_damaging(0.996) TCGA-05-4397-01 15 74467991 74467991 C A ISLR Silent p.A264A 0.43 TCGA-05-4397-01 15 74703902 74703902 G A SEMA7A Silent p.S524S 0.44 TCGA-05-4397-01 15 82422766 82422766 T A EFTUD1 Missense_Mutation p.E1104V 0.40 deleterious(0) probably_damaging(0.955) TCGA-05-4397-01 15 82575200 82575200 G A FAM154B Missense_Mutation p.E332K 0.22 tolerated(0.59) benign(0.02) TCGA-05-4397-01 15 90030080 90030080 C A RHCG Missense_Mutation p.Q107H 0.50 deleterious(0.01) possibly_damaging(0.906) TCGA-05-4397-01 15 90328733 90328733 C G ANPEP Splice_Site p.X918_splice 0.40 TCGA-05-4397-01 15 93492225 93492225 C G CHD2 Missense_Mutation p.P474R 0.49 deleterious(0) probably_damaging(1) TCGA-05-4397-01 16 11370155 11370155 C A PRM2 Nonsense_Mutation p.E25* 0.06 TCGA-05-4397-01 16 1394604 1394604 A G BAIAP3 Silent p.P589P 0.40 TCGA-05-4397-01 16 16130398 16130398 G A ABCC1 Silent p.T249T 0.35 TCGA-05-4397-01 16 18864947 18864947 T G SMG1 Missense_Mutation p.T1576P 0.38 tolerated(0.34) benign(0.001) TCGA-05-4397-01 16 20329700 20329700 G A GP2 Missense_Mutation p.L357F 0.40 deleterious(0) probably_damaging(0.998) TCGA-05-4397-01 16 2035896 2035896 C T GFER Missense_Mutation p.T162I 0.36 deleterious(0) possibly_damaging(0.9) TCGA-05-4397-01 16 20359605 20359605 C A UMOD Missense_Mutation p.D305Y 0.37 deleterious(0.02) possibly_damaging(0.907) TCGA-05-4397-01 16 21654460 21654460 G T IGSF6 Missense_Mutation p.R201S 0.31 deleterious(0.01) probably_damaging(0.912) TCGA-05-4397-01 16 2333253 2333253 G A ABCA3 Silent p.L1323L 0.48 TCGA-05-4397-01 16 24583448 24583448 A - RBBP6 Frame_Shift_Del p.S1688Afs*100 0.31 TCGA-05-4397-01 16 2815031 2815031 C T SRRM2 Missense_Mutation p.S1501L 0.41 benign(0.184) TCGA-05-4397-01 16 28515337 28515337 A G IL27 Silent p.V22V 0.44 TCGA-05-4397-01 16 28550293 28550293 G A NUPR1 5'UTR 0.38 TCGA-05-4397-01 16 2871586 2871586 C T PRSS21 Missense_Mutation p.P309S 0.39 tolerated(0.49) unknown(0) TCGA-05-4397-01 16 28883956 28883956 C T SH2B1 Silent p.I609I 0.45 TCGA-05-4397-01 16 30616690 30616690 C T ZNF689 Missense_Mutation p.R133Q 0.27 tolerated(0.3) benign(0.194) TCGA-05-4397-01 16 3108841 3108841 C G MMP25 Missense_Mutation p.F477L 0.50 deleterious(0) probably_damaging(0.999) TCGA-05-4397-01 16 31421741 31421741 G A ITGAD Missense_Mutation p.G370E 0.34 deleterious(0) probably_damaging(1) TCGA-05-4397-01 16 3406108 3406108 T A OR2C1 Missense_Mutation p.H56Q 0.41 tolerated(0.07) possibly_damaging(0.478) TCGA-05-4397-01 16 4164582 4164582 G A ADCY9 Missense_Mutation p.H288Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-05-4397-01 16 46781676 46781676 C T MYLK3 Missense_Mutation p.G144R 0.44 deleterious(0) probably_damaging(0.951) TCGA-05-4397-01 16 46992959 46992959 C A DNAJA2 Missense_Mutation p.V335L 0.46 deleterious(0.01) possibly_damaging(0.521) TCGA-05-4397-01 16 48119591 48119591 C A ABCC12 Missense_Mutation p.Q1247H 0.40 tolerated(0.23) benign(0.014) TCGA-05-4397-01 16 53513070 53513070 C A RBL2 Missense_Mutation p.T903K 0.10 deleterious(0) possibly_damaging(0.867) TCGA-05-4397-01 16 538915 538915 G T RAB11FIP3 Missense_Mutation p.G394C 0.32 deleterious(0.02) probably_damaging(1) TCGA-05-4397-01 16 57713163 57713163 G T GPR97 Missense_Mutation p.M189I 0.45 tolerated(0.32) benign(0.002) TCGA-05-4397-01 16 65032652 65032652 G T CDH11 Silent p.A112A 0.39 TCGA-05-4397-01 16 66880940 66880940 G T CA7 Silent p.S16S 0.33 TCGA-05-4397-01 16 69726378 69726378 G A NFAT5 Missense_Mutation p.E884K 0.24 benign(0.16) TCGA-05-4397-01 16 69833148 69833148 G T WWP2 Missense_Mutation p.G97V 0.39 deleterious(0) probably_damaging(0.999) TCGA-05-4397-01 16 70819711 70819711 T A VAC14 Missense_Mutation p.D106V 0.28 deleterious(0) probably_damaging(1) TCGA-05-4397-01 16 76555172 76555172 T A CNTNAP4 Nonsense_Mutation p.L761* 0.45 TCGA-05-4397-01 16 81198331 81198331 G C PKD1L2 RNA 0.46 TCGA-05-4397-01 16 81232343 81232343 G C PKD1L2 Silent p.L17L 0.48 TCGA-05-4397-01 16 82182933 82182933 C A MPHOSPH6 Missense_Mutation p.D111Y 0.40 deleterious(0) probably_damaging(0.983) TCGA-05-4397-01 16 84099360 84099360 G A MBTPS1 Missense_Mutation p.S789L 0.46 deleterious(0) probably_damaging(1) TCGA-05-4397-01 16 855729 855729 C G PRR25 Missense_Mutation p.T96R 0.21 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-05-4397-01 16 85721135 85721135 G T GINS2 Missense_Mutation p.L46M 0.39 deleterious(0.01) probably_damaging(0.952) TCGA-05-4397-01 16 87935551 87935551 C A CA5A Missense_Mutation p.R195S 0.39 deleterious(0) benign(0.145) TCGA-05-4397-01 16 89763699 89763699 G - SPATA2L 3'UTR 0.50 TCGA-05-4397-01 16 8988689 8988689 C A USP7 Missense_Mutation p.M1021I 0.32 deleterious(0) benign(0.245) TCGA-05-4397-01 17 10243657 10243657 C A MYH13 Silent p.S652S 0.50 TCGA-05-4397-01 17 1563786 1563786 C A PRPF8 Missense_Mutation p.Q1575H 0.80 deleterious(0) probably_damaging(0.981) TCGA-05-4397-01 17 16203251 16203251 A G PIGL Missense_Mutation p.R129G 0.69 tolerated(0.06) benign(0.002) TCGA-05-4397-01 17 17127348 17127348 C T FLCN Nonsense_Mutation p.W169* 0.79 TCGA-05-4397-01 17 17764829 17764829 A G TOM1L2 Silent p.L413L 0.64 TCGA-05-4397-01 17 21319012 21319012 C A KCNJ12 Missense_Mutation p.R120S 0.11 tolerated(0.42) benign(0.115) TCGA-05-4397-01 17 21477578 21477578 C A AC138710.1 5'Flank 0.28 TCGA-05-4397-01 17 25621264 25621264 G C WSB1 5'UTR 0.57 TCGA-05-4397-01 17 25758423 25758423 T C TBC1D3P5 RNA 0.50 TCGA-05-4397-01 17 29645376 29645376 C G EVI2A Missense_Mutation p.R242T 0.32 tolerated(0.1) possibly_damaging(0.663) TCGA-05-4397-01 17 36352517 36352517 C A RP11-1407O15.2 Missense_Mutation p.G424C 0.23 TCGA-05-4397-01 17 37657618 37657618 A C CDK12 Missense_Mutation p.E845D 0.44 probably_damaging(0.975) TCGA-05-4397-01 17 38990925 38990925 C G TMEM99 Missense_Mutation p.Q53E 0.75 deleterious_low_confidence(0) benign(0.092) TCGA-05-4397-01 17 39636931 39636931 A T KRT35 Missense_Mutation p.M140K 0.39 deleterious(0.03) benign(0.082) TCGA-05-4397-01 17 40142374 40142374 T C DNAJC7 Silent p.L169L 0.65 TCGA-05-4397-01 17 40491337 40491337 C T STAT3 Missense_Mutation p.V155M 0.25 deleterious(0.01) possibly_damaging(0.711) TCGA-05-4397-01 17 42635929 42635929 G T FZD2 Silent p.S291S 0.42 TCGA-05-4397-01 17 42971873 42971873 T C EFTUD2 Missense_Mutation p.Y6C 0.43 deleterious(0) probably_damaging(0.999) TCGA-05-4397-01 17 45891033 45891033 G C OSBPL7 Missense_Mutation p.L507V 0.18 deleterious(0) probably_damaging(0.999) TCGA-05-4397-01 17 45891105 45891105 G C OSBPL7 Missense_Mutation p.L483V 0.25 deleterious(0) probably_damaging(0.999) TCGA-05-4397-01 17 46474063 46474063 C A SKAP1 Missense_Mutation p.G44V 0.37 tolerated(0.06) probably_damaging(0.945) TCGA-05-4397-01 17 46474064 46474064 C G SKAP1 Missense_Mutation p.G44R 0.36 tolerated(0.65) probably_damaging(0.959) TCGA-05-4397-01 17 46685385 46685385 T C HOXB7 Missense_Mutation p.Y158C 0.49 deleterious(0) probably_damaging(0.95) TCGA-05-4397-01 17 51900958 51900958 G T KIF2B Missense_Mutation p.M188I 0.11 tolerated(0.07) benign(0.004) TCGA-05-4397-01 17 54893277 54893277 C T C17orf67 5'UTR 0.25 TCGA-05-4397-01 17 56247335 56247335 T G OR4D2 Missense_Mutation p.L107V 0.57 tolerated(0.29) benign(0.077) TCGA-05-4397-01 17 56435120 56435120 T C RNF43 Missense_Mutation p.T673A 0.35 tolerated_low_confidence(0.71) benign(0.004) TCGA-05-4397-01 17 57247240 57247240 A T PRR11 Nonsense_Mutation p.R43* 0.25 TCGA-05-4397-01 17 60130024 60130024 C T MED13 Missense_Mutation p.C115Y 0.45 deleterious(0) probably_damaging(0.975) TCGA-05-4397-01 17 61557706 61557706 G T ACE Missense_Mutation p.D222Y 0.47 deleterious(0) probably_damaging(1) TCGA-05-4397-01 17 61958249 61958249 C T GH2 Silent p.L113L 0.50 TCGA-05-4397-01 17 66928445 66928445 G T ABCA8 Silent p.R261R 0.51 TCGA-05-4397-01 17 66979867 66979867 C A ABCA9 Missense_Mutation p.Q1541H 0.17 tolerated(0.1) benign(0.033) TCGA-05-4397-01 17 67513012 67513012 G T MAP2K6 Missense_Mutation p.D34Y 0.47 deleterious(0) probably_damaging(0.971) TCGA-05-4397-01 17 71228443 71228443 C A FAM104A Translation_Start_Site p.M1? 0.31 deleterious_low_confidence(0) unknown(0) TCGA-05-4397-01 17 72285814 72285814 C A DNAI2 Silent p.S183S 0.39 TCGA-05-4397-01 17 7577537 7577537 C - TP53 Frame_Shift_Del p.R249Gfs*96 0.53 TCGA-05-4397-01 17 76522807 76522807 C G DNAH17 Missense_Mutation p.E1213Q 0.61 benign(0.016) TCGA-05-4397-01 17 7760052 7760052 G C LSMD1 Silent p.L173L 0.20 TCGA-05-4397-01 17 78175564 78175564 C - CARD14 Frame_Shift_Del p.L626Cfs*29 0.50 TCGA-05-4397-01 17 7830684 7830686 CGG AAA KCNAB3 Missense_Mutation p.TA127IS 0.12 TCGA-05-4397-01 17 79620334 79620334 A G PDE6G Translation_Start_Site p.M1? 0.94 deleterious_low_confidence(0) benign(0.007) TCGA-05-4397-01 17 80039971 80039971 C T FASN Missense_Mutation p.R2026H 0.85 deleterious(0.02) benign(0.251) TCGA-05-4397-01 18 21736412 21736412 T C CABYR Intron 0.46 TCGA-05-4397-01 18 22804911 22804911 G - ZNF521 Frame_Shift_Del p.R991Gfs*14 0.32 TCGA-05-4397-01 18 25532316 25532316 T A CDH2 Missense_Mutation p.K841I 0.30 deleterious(0) probably_damaging(0.966) TCGA-05-4397-01 18 31325273 31325273 A T ASXL3 Nonsense_Mutation p.R1821* 0.40 TCGA-05-4397-01 18 31432983 31432983 G A NOL4 Silent p.S580S 0.39 TCGA-05-4397-01 18 32400876 32400876 T C DTNA Missense_Mutation p.I333T 0.45 tolerated(0.05) benign(0.099) TCGA-05-4397-01 18 34753035 34753035 C A KIAA1328 Missense_Mutation p.T505N 0.39 tolerated(0.39) benign(0.002) TCGA-05-4397-01 18 43247870 43247870 C A SLC14A2 Missense_Mutation p.P597H 0.41 deleterious(0) probably_damaging(0.962) TCGA-05-4397-01 18 52546615 52546615 G C RAB27B Missense_Mutation p.G57R 0.42 deleterious(0.04) possibly_damaging(0.618) TCGA-05-4397-01 18 56205026 56205026 C G ALPK2 Missense_Mutation p.R798T 0.47 tolerated(0.16) benign(0.261) TCGA-05-4397-01 18 59739950 59739950 G A PIGN Silent p.F876F 0.33 TCGA-05-4397-01 18 59919955 59919955 G A KIAA1468 Missense_Mutation p.E598K 0.06 deleterious(0) probably_damaging(0.988) TCGA-05-4397-01 18 61390292 61390292 A T SERPINB11 Nonsense_Mutation p.R280* 0.18 TCGA-05-4397-01 18 67992312 67992312 G T SOCS6 Silent p.P136P 0.51 TCGA-05-4397-01 18 7009334 7009334 T A LAMA1 Missense_Mutation p.E1302V 0.85 deleterious(0.01) probably_damaging(0.974) TCGA-05-4397-01 18 7036007 7036008 - A LAMA1 Frame_Shift_Ins p.H607Afs*3 0.19 TCGA-05-4397-01 18 70417719 70417719 G C NETO1 Silent p.V373V 0.15 TCGA-05-4397-01 18 70526213 70526213 C A NETO1 Missense_Mutation p.G106V 0.46 deleterious(0) probably_damaging(1) TCGA-05-4397-01 18 74639891 74639891 G T ZNF236 Missense_Mutation p.D1473Y 0.44 deleterious(0) probably_damaging(0.996) TCGA-05-4397-01 18 7774262 7774262 G T PTPRM Missense_Mutation p.M63I 0.64 tolerated(0.18) benign(0.001) TCGA-05-4397-01 19 10169335 10169335 T A C3P1 Splice_Site 0.47 TCGA-05-4397-01 19 10668695 10668695 C T KRI1 Missense_Mutation p.G444R 0.36 tolerated(0.06) benign(0.031) TCGA-05-4397-01 19 11545887 11545887 T A CCDC151 5'UTR 0.16 TCGA-05-4397-01 19 11849696 11849696 G C ZNF823 5'UTR 0.54 TCGA-05-4397-01 19 12858371 12858371 G T ASNA1 Missense_Mutation p.A294S 0.27 tolerated(0.34) benign(0.074) TCGA-05-4397-01 19 13035003 13035003 C T FARSA Silent p.E450E 0.41 TCGA-05-4397-01 19 15083604 15083604 C T SLC1A6 Missense_Mutation p.R40H 0.13 tolerated(0.18) benign(0.203) TCGA-05-4397-01 19 15350202 15350202 C A BRD4 Splice_Site p.X1192_splice 0.35 TCGA-05-4397-01 19 15350203 15350203 C A BRD4 Missense_Mutation p.K1192N 0.35 benign(0.403) TCGA-05-4397-01 19 16204497 16204497 G C TPM4 Missense_Mutation p.E236Q 0.24 deleterious(0) probably_damaging(1) TCGA-05-4397-01 19 16238849 16238849 A G RAB8A Missense_Mutation p.Y143C 0.42 deleterious(0.01) probably_damaging(0.945) TCGA-05-4397-01 19 16628152 16628152 G T C19orf44 Intron 0.46 TCGA-05-4397-01 19 21300980 21300980 G T ZNF714 Missense_Mutation p.G504C 0.52 deleterious(0) probably_damaging(1) TCGA-05-4397-01 19 22271507 22271507 G A ZNF257 Missense_Mutation p.E319K 0.09 tolerated(0.12) possibly_damaging(0.461) TCGA-05-4397-01 19 30502071 30502071 G A URI1 Missense_Mutation p.R369Q 0.38 tolerated(0.06) possibly_damaging(0.556) TCGA-05-4397-01 19 30934685 30934685 G C ZNF536 Missense_Mutation p.M72I 0.35 tolerated_low_confidence(0.17) benign(0) TCGA-05-4397-01 19 30935922 30935922 A T ZNF536 Nonsense_Mutation p.K485* 0.41 TCGA-05-4397-01 19 30936282 30936282 C A ZNF536 Silent p.R605R 0.45 TCGA-05-4397-01 19 33716539 33716539 G A SLC7A10 Missense_Mutation p.P24L 0.52 tolerated(0.15) benign(0.025) TCGA-05-4397-01 19 35085417 35085417 C A SCGB2B2 Missense_Mutation p.V18F 0.44 deleterious_low_confidence(0) possibly_damaging(0.884) TCGA-05-4397-01 19 36014365 36014365 G T SBSN 3'UTR 0.32 TCGA-05-4397-01 19 39955488 39955488 C G SUPT5H Missense_Mutation p.I225M 0.37 deleterious(0) probably_damaging(0.997) TCGA-05-4397-01 19 40827997 40827997 T C C19orf47 Missense_Mutation p.K354R 0.64 tolerated(0.07) benign(0.1) TCGA-05-4397-01 19 4288274 4288274 G C SHD Missense_Mutation p.E251Q 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-05-4397-01 19 44834051 44834051 C A ZNF112 Missense_Mutation p.V93L 0.62 tolerated(0.68) benign(0.004) TCGA-05-4397-01 19 45667461 45667461 C TG TRAPPC6A Frame_Shift_Ins p.M120Nfs*32 0.59 TCGA-05-4397-01 19 474645 474645 A T ODF3L2 Missense_Mutation p.C35S 0.55 tolerated(0.55) benign(0.008) TCGA-05-4397-01 19 49518853 49518853 A G RUVBL2 Missense_Mutation p.I426V 0.77 tolerated(1) benign(0.002) TCGA-05-4397-01 19 49575581 49575581 C T KCNA7 Missense_Mutation p.V88I 0.36 tolerated(0.8) benign(0.018) TCGA-05-4397-01 19 49793479 49793479 G T SLC6A16 Silent p.P704P 0.72 TCGA-05-4397-01 19 51013625 51013625 C G JOSD2 Missense_Mutation p.E22Q 0.44 tolerated(0.18) probably_damaging(0.999) TCGA-05-4397-01 19 51219627 51219627 G T SHANK1 Missense_Mutation p.P122T 0.76 probably_damaging(0.986) TCGA-05-4397-01 19 52568469 52568469 C T ZNF841 Missense_Mutation p.R889H 0.28 tolerated(0.58) benign(0.021) TCGA-05-4397-01 19 53958024 53958024 A T ZNF761 RNA 0.55 TCGA-05-4397-01 19 53960363 53960363 G C ZNF761 RNA 0.71 TCGA-05-4397-01 19 55239117 55239117 C A KIR3DL3 Silent p.P132P 0.71 TCGA-05-4397-01 19 55239118 55239118 C T KIR3DL3 Silent p.L133L 0.72 TCGA-05-4397-01 19 57133862 57133862 G T ZNF71 Missense_Mutation p.V403L 0.81 tolerated(0.07) benign(0.16) TCGA-05-4397-01 19 57325536 57325536 G C PEG3 Missense_Mutation p.P1425R 0.77 deleterious(0.01) probably_damaging(0.982) TCGA-05-4397-01 19 57325537 57325537 G A PEG3 Missense_Mutation p.P1425S 0.74 deleterious(0.03) probably_damaging(0.965) TCGA-05-4397-01 19 57901428 57901428 G A AC003002.6 5'UTR 0.54 TCGA-05-4397-01 19 58189694 58189694 C T ZSCAN4 Silent p.Y241Y 0.83 TCGA-05-4397-01 19 58718164 58718164 G A ZNF274 Missense_Mutation p.E112K 0.38 tolerated(0.06) probably_damaging(0.986) TCGA-05-4397-01 19 6501606 6501606 C T TUBB4A Missense_Mutation p.G29D 0.53 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-05-4397-01 19 6908736 6908736 G T EMR1 Missense_Mutation p.V359F 0.20 deleterious(0.01) benign(0.05) TCGA-05-4397-01 19 6908779 6908779 T C EMR1 Missense_Mutation p.L373P 0.59 deleterious(0.05) benign(0.046) TCGA-05-4397-01 19 7585855 7585855 G T ZNF358 3'UTR 0.71 TCGA-05-4397-01 19 7589950 7589950 C G MCOLN1 Silent p.L45L 0.05 TCGA-05-4397-01 19 7963616 7963616 A C LRRC8E Missense_Mutation p.Q70P 0.22 tolerated(0.26) benign(0.038) TCGA-05-4397-01 19 8138167 8138167 C A FBN3 Missense_Mutation p.A2573S 0.53 tolerated(0.86) possibly_damaging(0.574) TCGA-05-4397-01 19 8148210 8148210 C T FBN3 Silent p.E2378E 0.48 TCGA-05-4397-01 19 830715 830715 G T AZU1 Missense_Mutation p.R123L 0.53 tolerated(0.07) probably_damaging(0.993) TCGA-05-4397-01 19 9047974 9047974 G T MUC16 Silent p.T11219T 0.35 TCGA-05-4397-01 19 9067439 9067439 G C MUC16 Missense_Mutation p.I6669M 0.36 unknown(0) TCGA-05-4397-01 1 100696436 100696436 C G DBT Missense_Mutation p.D96H 0.18 deleterious(0) probably_damaging(0.996) TCGA-05-4397-01 1 10197141 10197141 A G UBE4B Silent p.P747P 0.41 TCGA-05-4397-01 1 102302475 102302476 - G OLFM3 Frame_Shift_Ins p.R59Pfs*23 0.22 TCGA-05-4397-01 1 10240059 10240059 G A UBE4B 3'UTR 0.10 TCGA-05-4397-01 1 11008812 11008812 C A C1orf127 Missense_Mutation p.Q460H 0.36 tolerated(0.38) probably_damaging(0.977) TCGA-05-4397-01 1 110212186 110212186 C T GSTM2 Missense_Mutation p.P118L 0.68 deleterious(0.02) possibly_damaging(0.872) TCGA-05-4397-01 1 11577583 11577583 G T PTCHD2 Missense_Mutation p.V605L 0.39 deleterious(0.01) possibly_damaging(0.582) TCGA-05-4397-01 1 11734865 11734865 A G MAD2L2 Silent p.L201L 0.36 TCGA-05-4397-01 1 1233224 1233224 C A ACAP3 Missense_Mutation p.S369I 0.82 tolerated(0.13) benign(0.005) TCGA-05-4397-01 1 1431272 1431272 C T ATAD3B 3'UTR 0.20 TCGA-05-4397-01 1 145115775 145115775 G C SEC22B RNA 0.12 TCGA-05-4397-01 1 146758077 146758077 G A CHD1L Silent p.L707L 0.37 TCGA-05-4397-01 1 146758078 146758078 G T CHD1L Missense_Mutation p.D708Y 0.37 deleterious(0) possibly_damaging(0.541) TCGA-05-4397-01 1 148012569 148012569 G A NBPF14 Nonsense_Mutation p.Q470* 0.18 TCGA-05-4397-01 1 149857921 149857921 G T HIST2H2BE Silent p.I90I 0.43 TCGA-05-4397-01 1 149915923 149915923 C A OTUD7B Missense_Mutation p.A789S 0.34 tolerated_low_confidence(0.85) benign(0.001) TCGA-05-4397-01 1 150039852 150039852 G T VPS45 5'UTR 0.47 TCGA-05-4397-01 1 152057805 152057805 C A TCHHL1 Missense_Mutation p.D785Y 0.38 tolerated(0.06) possibly_damaging(0.62) TCGA-05-4397-01 1 152128437 152128437 C A RPTN Missense_Mutation p.G380C 0.38 deleterious(0) probably_damaging(0.976) TCGA-05-4397-01 1 152187577 152187577 C G HRNR Silent p.G2176G 0.06 TCGA-05-4397-01 1 152326311 152326311 C T FLG2 Silent p.Q1317Q 0.42 TCGA-05-4397-01 1 152329486 152329486 C G FLG2 Missense_Mutation p.R259T 0.11 unknown(0) TCGA-05-4397-01 1 154517340 154517340 C G TDRD10 Silent p.T289T 0.25 TCGA-05-4397-01 1 156100423 156100423 G A LMNA Silent p.E124E 0.32 TCGA-05-4397-01 1 156874598 156874598 C T PEAR1 Missense_Mutation p.P54S 0.30 tolerated(0.62) benign(0.019) TCGA-05-4397-01 1 157062682 157062682 T C ETV3L Missense_Mutation p.H282R 0.32 tolerated(0.06) benign(0.001) TCGA-05-4397-01 1 157801728 157801728 G A CD5L 3'UTR 0.26 TCGA-05-4397-01 1 157804200 157804200 C A CD5L Nonsense_Mutation p.E239* 0.62 TCGA-05-4397-01 1 158517172 158517172 C - OR6Y1 Frame_Shift_Del p.A242Hfs*9 0.23 TCGA-05-4397-01 1 158580966 158580966 T A SPTA1 3'UTR 0.24 TCGA-05-4397-01 1 158906820 158906820 A T PYHIN1 Missense_Mutation p.K40N 0.24 deleterious(0) benign(0.055) TCGA-05-4397-01 1 158913640 158913640 G C PYHIN1 Missense_Mutation p.V355L 0.51 deleterious(0.01) probably_damaging(0.979) TCGA-05-4397-01 1 158913661 158913661 C G PYHIN1 Missense_Mutation p.H362D 0.56 deleterious(0.01) probably_damaging(0.998) TCGA-05-4397-01 1 159277563 159277563 A G FCER1A Silent p.Q205Q 0.04 TCGA-05-4397-01 1 160783548 160783548 C A LY9 Missense_Mutation p.P193T 0.27 tolerated(0.29) possibly_damaging(0.674) TCGA-05-4397-01 1 161069200 161069200 C G KLHDC9 Missense_Mutation p.P198A 0.32 tolerated(0.3) benign(0.002) TCGA-05-4397-01 1 161160829 161160829 C A ADAMTS4 3'UTR 0.16 TCGA-05-4397-01 1 161160830 161160830 C A ADAMTS4 3'UTR 0.15 TCGA-05-4397-01 1 16342122 16342122 G C HSPB7 Missense_Mutation p.H156D 0.14 tolerated(0.59) benign(0.212) TCGA-05-4397-01 1 16462249 16462249 C A EPHA2 Missense_Mutation p.R443S 0.45 tolerated(0.55) benign(0.003) TCGA-05-4397-01 1 165651442 165651442 T C ALDH9A1 Missense_Mutation p.Y165C 0.06 deleterious(0) probably_damaging(0.996) TCGA-05-4397-01 1 165667628 165667628 G A ALDH9A1 Silent p.F56F 0.41 TCGA-05-4397-01 1 167780114 167780114 G T ADCY10 Missense_Mutation p.P1507T 0.32 deleterious(0.02) benign(0.259) TCGA-05-4397-01 1 169572376 169572376 A G SELP Silent p.S531S 0.55 TCGA-05-4397-01 1 17266430 17266430 C A CROCC Silent p.G550G 0.24 TCGA-05-4397-01 1 175334239 175334239 T A TNR Missense_Mutation p.M832L 0.67 tolerated(0.11) benign(0.001) TCGA-05-4397-01 1 176525345 176525345 A G PAPPA2 5'UTR 0.29 TCGA-05-4397-01 1 176564507 176564507 C A PAPPA2 Missense_Mutation p.S589R 0.51 deleterious(0) probably_damaging(0.979) TCGA-05-4397-01 1 176709119 176709119 C A PAPPA2 Missense_Mutation p.T1313N 0.26 deleterious(0.05) possibly_damaging(0.634) TCGA-05-4397-01 1 176709120 176709120 C T PAPPA2 Silent p.T1313T 0.26 TCGA-05-4397-01 1 177249996 177249996 G T BRINP2 Missense_Mutation p.G562W 0.17 deleterious(0) possibly_damaging(0.908) TCGA-05-4397-01 1 179815333 179815333 G A TOR1AIP2 Missense_Mutation p.S429F 0.30 deleterious(0) probably_damaging(0.965) TCGA-05-4397-01 1 181745256 181745256 C A CACNA1E Missense_Mutation p.A1720D 0.28 deleterious(0) possibly_damaging(0.887) TCGA-05-4397-01 1 182355522 182355522 T A GLUL Missense_Mutation p.H115L 0.24 tolerated(0.14) benign(0.002) TCGA-05-4397-01 1 182615882 182615882 C G RGS8 Missense_Mutation p.R195S 0.60 tolerated_low_confidence(0.11) unknown(0) TCGA-05-4397-01 1 183099634 183099634 G A LAMC1 Missense_Mutation p.E1146K 0.26 tolerated(0.41) benign(0.055) TCGA-05-4397-01 1 183259340 183259340 C A NMNAT2 Missense_Mutation p.V82L 0.56 deleterious(0.03) possibly_damaging(0.537) TCGA-05-4397-01 1 184688331 184688331 A C EDEM3 Missense_Mutation p.Y376D 0.20 deleterious(0.02) possibly_damaging(0.68) TCGA-05-4397-01 1 186306192 186306192 C A TPR Nonsense_Mutation p.E1487* 0.54 TCGA-05-4397-01 1 186901923 186901923 G T PLA2G4A Missense_Mutation p.G196V 0.32 deleterious(0) probably_damaging(0.998) TCGA-05-4397-01 1 18692014 18692014 A T IGSF21 Missense_Mutation p.S280C 0.39 deleterious(0.04) possibly_damaging(0.613) TCGA-05-4397-01 1 190067209 190067209 T G BRINP3 Missense_Mutation p.Q747P 0.29 deleterious(0.02) possibly_damaging(0.502) TCGA-05-4397-01 1 192153479 192153479 C A RGS18 Missense_Mutation p.P168H 0.25 deleterious(0) probably_damaging(1) TCGA-05-4397-01 1 193053901 193053901 G T TROVE2 3'UTR 0.30 TCGA-05-4397-01 1 196714946 196714946 G T CFH Splice_Site p.X1104_splice 0.28 TCGA-05-4397-01 1 196883639 196883639 C A CFHR4 Missense_Mutation p.P398T 0.47 deleterious(0) possibly_damaging(0.641) TCGA-05-4397-01 1 197030920 197030920 C T F13B Missense_Mutation p.E149K 0.30 tolerated(0.82) benign(0.049) TCGA-05-4397-01 1 197073145 197073145 T G ASPM Missense_Mutation p.K1746Q 0.61 deleterious(0.05) probably_damaging(0.998) TCGA-05-4397-01 1 197390239 197390239 C G CRB1 Missense_Mutation p.N427K 0.57 tolerated(0.31) benign(0.103) TCGA-05-4397-01 1 197704783 197704783 C T DENND1B Intron 0.07 TCGA-05-4397-01 1 19992205 19992205 C - HTR6 5'UTR 0.61 TCGA-05-4397-01 1 203472096 203472096 C A OPTC Missense_Mutation p.P263T 0.55 deleterious(0) probably_damaging(0.994) TCGA-05-4397-01 1 205884139 205884139 G T SLC26A9 Silent p.R849R 0.27 TCGA-05-4397-01 1 206225092 206225092 T C AVPR1B Missense_Mutation p.C218R 0.29 deleterious(0) probably_damaging(0.977) TCGA-05-4397-01 1 207930897 207930897 C T CD46 Missense_Mutation p.P100L 0.21 tolerated(0.06) benign(0.076) TCGA-05-4397-01 1 209933482 209933482 G A TRAF3IP3 Missense_Mutation p.R33H 0.36 deleterious(0.02) probably_damaging(0.984) TCGA-05-4397-01 1 212788434 212788434 C G ATF3 Missense_Mutation p.S24C 0.53 deleterious(0.03) probably_damaging(0.997) TCGA-05-4397-01 1 212798729 212798750 AATTTACCTCTTGCGGCCACCC - FAM71A Frame_Shift_Del p.I171Wfs*15 0.51 TCGA-05-4397-01 1 214814818 214814818 C T CENPF Missense_Mutation p.A1046V 0.17 benign(0.004) TCGA-05-4397-01 1 214815414 214815414 C T CENPF Missense_Mutation p.L1245F 0.16 possibly_damaging(0.731) TCGA-05-4397-01 1 214818275 214818275 C T CENPF Missense_Mutation p.H1788Y 0.15 possibly_damaging(0.544) TCGA-05-4397-01 1 214818772 214818772 C T CENPF Silent p.L1953L 0.14 TCGA-05-4397-01 1 214818774 214818774 C T CENPF Missense_Mutation p.S1954L 0.15 benign(0.011) TCGA-05-4397-01 1 214818975 214818975 C G CENPF Missense_Mutation p.S2021C 0.15 probably_damaging(0.996) TCGA-05-4397-01 1 214819658 214819658 C A CENPF Missense_Mutation p.Q2249K 0.17 benign(0.225) TCGA-05-4397-01 1 214825149 214825149 G C CENPF Missense_Mutation p.E2694Q 0.20 possibly_damaging(0.756) TCGA-05-4397-01 1 214826243 214826243 G A CENPF Missense_Mutation p.E2745K 0.13 probably_damaging(0.99) TCGA-05-4397-01 1 214830356 214830356 G A CENPF Missense_Mutation p.E2856K 0.19 probably_damaging(0.994) TCGA-05-4397-01 1 214830542 214830542 G A CENPF Missense_Mutation p.E2918K 0.22 probably_damaging(0.994) TCGA-05-4397-01 1 216062335 216062335 G T USH2A Silent p.T2552T 0.30 TCGA-05-4397-01 1 216062336 216062336 G T USH2A Missense_Mutation p.T2552N 0.30 possibly_damaging(0.673) TCGA-05-4397-01 1 22192207 22192207 C G HSPG2 Intron 0.30 TCGA-05-4397-01 1 226128626 226128626 C T LEFTY2 Missense_Mutation p.R72H 0.26 tolerated(0.09) benign(0.01) TCGA-05-4397-01 1 228481316 228481316 G C OBSCN Missense_Mutation p.R4139S 0.29 benign(0.245) TCGA-05-4397-01 1 228492083 228492083 G A OBSCN Silent p.L4694L 0.32 TCGA-05-4397-01 1 228547765 228547765 T G OBSCN Intron 0.33 TCGA-05-4397-01 1 230883330 230883330 G C CAPN9 Missense_Mutation p.E30Q 0.16 tolerated(0.06) benign(0.028) TCGA-05-4397-01 1 231488267 231488267 G C SPRTN Intron 0.11 TCGA-05-4397-01 1 233091308 233091308 G T NTPCR Nonsense_Mutation p.G14* 0.33 TCGA-05-4397-01 1 234041292 234041292 C T SLC35F3 Missense_Mutation p.P24L 0.61 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-05-4397-01 1 23650093 23650093 T C HNRNPR Missense_Mutation p.I211V 0.46 tolerated(1) benign(0.051) TCGA-05-4397-01 1 236719179 236719179 C T HEATR1 Missense_Mutation p.E1859K 0.26 tolerated(0.09) benign(0.155) TCGA-05-4397-01 1 236723047 236723047 C A HEATR1 Silent p.A1579A 0.63 TCGA-05-4397-01 1 23713895 23713895 T A TCEA3 Missense_Mutation p.E279D 0.38 deleterious(0) possibly_damaging(0.836) TCGA-05-4397-01 1 237732601 237732601 G A RYR2 Missense_Mutation p.D1194N 0.25 probably_damaging(0.999) TCGA-05-4397-01 1 237982348 237982348 C A RYR2 Missense_Mutation p.H4816N 0.52 possibly_damaging(0.728) TCGA-05-4397-01 1 238045820 238045820 C - ZP4 Frame_Shift_Del p.V509Wfs*8 0.27 TCGA-05-4397-01 1 245912968 245912968 T A SMYD3 Splice_Site p.X396_splice 0.37 TCGA-05-4397-01 1 247163260 247163260 C G ZNF695 Silent p.L40L 0.50 TCGA-05-4397-01 1 247263792 247263792 A T ZNF669 Missense_Mutation p.Y427N 0.21 deleterious(0) probably_damaging(0.977) TCGA-05-4397-01 1 247582246 247582246 C A NLRP3 Missense_Mutation p.D50E 0.63 deleterious(0.03) probably_damaging(0.994) TCGA-05-4397-01 1 247597474 247597474 G T NLRP3 Missense_Mutation p.K799N 0.63 tolerated(0.62) benign(0.062) TCGA-05-4397-01 1 247695456 247695456 A C OR2C3 Missense_Mutation p.S120A 0.46 tolerated(1) benign(0.007) TCGA-05-4397-01 1 248201677 248201677 G T OR2L2 Missense_Mutation p.M36I 0.32 tolerated(0.15) benign(0.005) TCGA-05-4397-01 1 248263048 248263048 C A OR2L13 Missense_Mutation p.A124D 0.57 deleterious(0) probably_damaging(0.969) TCGA-05-4397-01 1 248366960 248366960 G T OR2M3 Missense_Mutation p.K197N 0.57 tolerated(0.63) benign(0.004) TCGA-05-4397-01 1 248367211 248367211 T G OR2M3 Missense_Mutation p.L281R 0.49 deleterious(0) probably_damaging(0.965) TCGA-05-4397-01 1 248512220 248512220 C T OR14C36 Silent p.T48T 0.30 TCGA-05-4397-01 1 248551769 248551769 C A OR2T6 Missense_Mutation p.P287H 0.33 deleterious(0) probably_damaging(0.992) TCGA-05-4397-01 1 248790328 248790328 C A OR2T11 Silent p.G34G 0.89 TCGA-05-4397-01 1 248813331 248813331 G C OR2T27 Silent p.L285L 0.21 TCGA-05-4397-01 1 27943704 27943704 C A FGR Missense_Mutation p.G178C 0.43 deleterious(0) probably_damaging(1) TCGA-05-4397-01 1 28177047 28177047 T C PPP1R8 3'UTR 0.55 TCGA-05-4397-01 1 29606079 29606079 C T PTPRU Missense_Mutation p.P559S 0.39 deleterious(0) probably_damaging(1) TCGA-05-4397-01 1 33235819 33235819 C T KIAA1522 Nonsense_Mutation p.Q347* 0.46 TCGA-05-4397-01 1 34049279 34049279 G A CSMD2 Silent p.L2403L 0.34 TCGA-05-4397-01 1 34112374 34112374 G T CSMD2 Missense_Mutation p.P1510T 0.49 deleterious(0) probably_damaging(0.987) TCGA-05-4397-01 1 34684395 34684395 T A C1orf94 3'UTR 0.37 TCGA-05-4397-01 1 36752349 36752349 A T THRAP3 Missense_Mutation p.K173M 0.39 deleterious(0) unknown(0) TCGA-05-4397-01 1 38095426 38095426 C A RSPO1 5'UTR 0.27 TCGA-05-4397-01 1 38322977 38322977 A C MTF1 Missense_Mutation p.I118M 0.39 deleterious(0) probably_damaging(0.987) TCGA-05-4397-01 1 51875246 51875246 G T EPS15 Silent p.L412L 0.35 TCGA-05-4397-01 1 55253465 55253465 C A TTC22 Nonsense_Mutation p.E220* 0.32 TCGA-05-4397-01 1 55253466 55253466 C A TTC22 Missense_Mutation p.E219D 0.41 tolerated(0.45) benign(0.002) TCGA-05-4397-01 1 55277513 55277513 A T C1orf177 Missense_Mutation p.Y176F 0.42 tolerated(0.06) benign(0.258) TCGA-05-4397-01 1 57216826 57216826 G C C1orf168 Missense_Mutation p.H426Q 0.52 tolerated(0.18) benign(0.131) TCGA-05-4397-01 1 62550300 62550300 G C INADL Missense_Mutation p.G1453R 0.40 deleterious(0) probably_damaging(1) TCGA-05-4397-01 1 68895425 68895425 T A RPE65 3'UTR 0.55 TCGA-05-4397-01 1 74671550 74671550 G T FPGT 3'UTR 0.47 TCGA-05-4397-01 1 75038355 75038355 A T C1orf173 Silent p.P1013P 0.43 TCGA-05-4397-01 1 75038802 75038802 T C C1orf173 Silent p.A864A 0.43 TCGA-05-4397-01 1 75626524 75626524 G T LHX8 Nonsense_Mutation p.G339* 0.43 TCGA-05-4397-01 1 77629531 77629531 C A PIGK Missense_Mutation p.R195L 0.28 deleterious(0) probably_damaging(0.939) TCGA-05-4397-01 1 82456749 82456749 A T LPHN2 Missense_Mutation p.I1378L 0.35 tolerated_low_confidence(0.22) probably_damaging(0.99) TCGA-05-4397-01 1 92459667 92459667 T A BRDT Missense_Mutation p.S715T 0.39 tolerated(0.28) benign(0.011) TCGA-05-4397-01 20 13029632 13029632 G C SPTLC3 Missense_Mutation p.E53Q 0.26 deleterious(0.03) possibly_damaging(0.642) TCGA-05-4397-01 20 19665898 19665898 A T SLC24A3 Missense_Mutation p.E406V 0.42 tolerated(0.11) benign(0.01) TCGA-05-4397-01 20 23584171 23584171 G A CST9 Silent p.A152A 0.44 TCGA-05-4397-01 20 2474173 2474173 G T ZNF343 Missense_Mutation p.Q57K 0.53 tolerated(0.98) benign(0) TCGA-05-4397-01 20 30556135 30556135 G A XKR7 Missense_Mutation p.E53K 0.53 tolerated(0.07) benign(0.003) TCGA-05-4397-01 20 3180739 3180739 C A DDRGK1 Missense_Mutation p.A140S 0.45 tolerated(0.32) probably_damaging(0.996) TCGA-05-4397-01 20 3180740 3180740 C A DDRGK1 Missense_Mutation p.E139D 0.45 tolerated(0.07) probably_damaging(0.992) TCGA-05-4397-01 20 33533834 33533834 T C GSS Missense_Mutation p.Y66C 0.40 tolerated(0.16) probably_damaging(0.988) TCGA-05-4397-01 20 35060907 35060907 G T DLGAP4 Nonsense_Mutation p.E263* 0.38 TCGA-05-4397-01 20 35521455 35521455 T G SAMHD1 Silent p.I587I 0.50 TCGA-05-4397-01 20 3556573 3556573 A G ATRN Missense_Mutation p.N731S 0.41 tolerated(0.64) benign(0.004) TCGA-05-4397-01 20 3675341 3675341 G A SIGLEC1 Silent p.S971S 0.38 TCGA-05-4397-01 20 36888932 36888932 G T KIAA1755 5'UTR 0.57 TCGA-05-4397-01 20 36997738 36997738 T A LBP Missense_Mutation p.Y361N 0.49 tolerated(0.24) benign(0.001) TCGA-05-4397-01 20 37146248 37146248 G A RALGAPB Missense_Mutation p.R384Q 0.13 deleterious(0.01) possibly_damaging(0.546) TCGA-05-4397-01 20 39794392 39794392 G T PLCG1 Missense_Mutation p.E575D 0.44 deleterious(0.04) benign(0.446) TCGA-05-4397-01 20 44828182 44828182 C T CDH22 Missense_Mutation p.E435K 0.58 tolerated(0.92) benign(0.094) TCGA-05-4397-01 20 46276056 46276056 A T NCOA3 Silent p.T1164T 0.46 TCGA-05-4397-01 20 4705650 4705650 G A PRND Silent p.R151R 0.34 TCGA-05-4397-01 20 55111569 55111569 G A FAM209B 3'UTR 0.13 TCGA-05-4397-01 20 57242651 57242651 G A STX16 Missense_Mutation p.E84K 0.21 deleterious(0.05) benign(0.264) TCGA-05-4397-01 20 57768837 57768837 C T ZNF831 Silent p.T921T 0.36 TCGA-05-4397-01 20 61511984 61511984 C G DIDO1 Missense_Mutation p.R1775T 0.49 probably_damaging(0.997) TCGA-05-4397-01 20 61869766 61869766 G T BIRC7 Silent p.R156R 0.46 TCGA-05-4397-01 20 62275217 62275217 A C STMN3 Silent p.P61P 0.11 TCGA-05-4397-01 20 62859386 62859386 T A MYT1 Intron 0.38 TCGA-05-4397-01 20 746287 746287 G A SLC52A3 Silent p.L44L 0.31 TCGA-05-4397-01 20 853669 853669 G T ANGPT4 Missense_Mutation p.H482Q 0.41 tolerated(0.07) benign(0.14) TCGA-05-4397-01 20 8698346 8698346 C T PLCB1 Missense_Mutation p.P455L 0.35 deleterious(0.02) probably_damaging(0.996) TCGA-05-4397-01 20 870983 870983 C T ANGPT4 Missense_Mutation p.R113K 0.45 tolerated(1) benign(0.011) TCGA-05-4397-01 20 9382220 9382220 G T PLCB4 Missense_Mutation p.A532S 0.50 tolerated(0.99) benign(0.01) TCGA-05-4397-01 21 11038790 11038790 C A BAGE2 RNA 0.10 TCGA-05-4397-01 21 11049568 11049568 G T BAGE2 RNA 0.06 TCGA-05-4397-01 21 11058268 11058268 C A BAGE2 RNA 0.06 TCGA-05-4397-01 21 31538455 31538455 G C CLDN17 Missense_Mutation p.L161V 0.45 deleterious(0) probably_damaging(0.986) TCGA-05-4397-01 21 31654687 31654687 G T KRTAP24-1 Silent p.V188V 0.34 TCGA-05-4397-01 21 31797875 31797875 G A KRTAP13-3 Missense_Mutation p.S119L 0.39 deleterious(0.02) possibly_damaging(0.582) TCGA-05-4397-01 21 31964886 31964886 G C KRTAP6-3 Missense_Mutation p.C34S 0.44 unknown(0) TCGA-05-4397-01 21 38597727 38597727 G C DSCR3 3'UTR 0.54 TCGA-05-4397-01 21 43833623 43833623 C T UBASH3A Missense_Mutation p.L220F 0.38 tolerated(0.73) benign(0.321) TCGA-05-4397-01 21 45400903 45400903 A G AGPAT3 Missense_Mutation p.M293V 0.42 tolerated(0.58) benign(0) TCGA-05-4397-01 21 45738419 45738419 G A PFKL Missense_Mutation p.V335M 0.59 tolerated(0.09) benign(0.008) TCGA-05-4397-01 22 16287268 16287268 C A POTEH Missense_Mutation p.K206N 0.34 deleterious(0.01) benign(0.41) TCGA-05-4397-01 22 19171032 19171032 G A CLTCL1 Silent p.F1566F 0.33 TCGA-05-4397-01 22 19707146 19707146 G T SEPT5 Missense_Mutation p.G26C 0.42 deleterious(0) probably_damaging(0.989) TCGA-05-4397-01 22 20796476 20796476 G C KLHL22 Missense_Mutation p.L597V 0.15 tolerated(1) benign(0.001) TCGA-05-4397-01 22 29879485 29879485 G C NEFH Silent p.L335L 0.26 TCGA-05-4397-01 22 31522647 31522647 C G INPP5J Silent p.L110L 0.43 TCGA-05-4397-01 22 32270283 32270283 A G DEPDC5 Silent p.E1187E 0.18 TCGA-05-4397-01 22 32495224 32495224 G T SLC5A1 Missense_Mutation p.Q445H 0.39 deleterious(0) probably_damaging(0.997) TCGA-05-4397-01 22 35802719 35802719 G A MCM5 Splice_Site p.X199_splice 0.09 TCGA-05-4397-01 22 38470903 38470903 G C PICK1 Missense_Mutation p.V338L 0.27 tolerated(0.25) benign(0.131) TCGA-05-4397-01 22 40231877 40231877 G T ENTHD1 Missense_Mutation p.P227T 0.42 tolerated(0.11) possibly_damaging(0.548) TCGA-05-4397-01 22 41609955 41609955 G C L3MBTL2 Missense_Mutation p.K107N 0.41 deleterious(0) possibly_damaging(0.742) TCGA-05-4397-01 22 45944567 45944567 C T FBLN1 Nonsense_Mutation p.Q506* 0.42 TCGA-05-4397-01 22 46785372 46785372 T C CELSR1 Missense_Mutation p.T2124A 0.70 deleterious(0.03) possibly_damaging(0.728) TCGA-05-4397-01 22 50563913 50563913 G T MOV10L1 Missense_Mutation p.M554I 0.79 tolerated(0.27) benign(0.036) TCGA-05-4397-01 2 103057795 103057795 G T IL18RAP Missense_Mutation p.D252Y 0.38 deleterious(0) possibly_damaging(0.474) TCGA-05-4397-01 2 10560020 10560020 A C HPCAL1 Missense_Mutation p.D46A 0.13 tolerated(0.26) benign(0.278) TCGA-05-4397-01 2 109087635 109087635 G T GCC2 Missense_Mutation p.C617F 0.56 tolerated(0.36) benign(0.049) TCGA-05-4397-01 2 113675249 113675249 C T IL37 Silent p.A101A 0.38 TCGA-05-4397-01 2 11484214 11484214 C A ROCK2 Missense_Mutation p.A17S 0.58 tolerated_low_confidence(0.74) benign(0) TCGA-05-4397-01 2 116525913 116525913 T C DPP10 Missense_Mutation p.F389S 0.39 deleterious(0) possibly_damaging(0.84) TCGA-05-4397-01 2 118579625 118579625 G T DDX18 Silent p.L313L 0.35 TCGA-05-4397-01 2 118579626 118579626 G T DDX18 Missense_Mutation p.D314Y 0.35 deleterious(0) probably_damaging(0.962) TCGA-05-4397-01 2 128381781 128381781 C T MYO7B Silent p.F1285F 0.50 TCGA-05-4397-01 2 128628438 128628438 C G AMMECR1L Missense_Mutation p.V195L 0.34 deleterious(0.01) probably_damaging(0.986) TCGA-05-4397-01 2 131829459 131829459 C A FAM168B Missense_Mutation p.M41I 0.40 tolerated(0.4) benign(0) TCGA-05-4397-01 2 135677405 135677405 A G CCNT2 Missense_Mutation p.I62V 0.39 deleterious(0) probably_damaging(0.964) TCGA-05-4397-01 2 135960488 135960488 C A ZRANB3 Missense_Mutation p.V1019L 0.30 deleterious(0) probably_damaging(0.939) TCGA-05-4397-01 2 136594643 136594643 C T LCT Missense_Mutation p.G33S 0.41 deleterious_low_confidence(0.03) probably_damaging(0.989) TCGA-05-4397-01 2 141459344 141459344 C A LRP1B Missense_Mutation p.G2125C 0.36 probably_damaging(0.981) TCGA-05-4397-01 2 152423688 152423688 C T NEB Silent p.Q6050Q 0.33 TCGA-05-4397-01 2 15555687 15555687 G A NBAS Nonsense_Mutation p.Q974* 0.35 TCGA-05-4397-01 2 163072468 163072468 G C FAP Missense_Mutation p.T269S 0.05 tolerated(0.07) benign(0.003) TCGA-05-4397-01 2 165987863 165987863 T C SCN3A Missense_Mutation p.Y819C 0.44 deleterious(0) probably_damaging(0.976) TCGA-05-4397-01 2 166183487 166183487 C A SCN2A Silent p.T714T 0.05 TCGA-05-4397-01 2 166747500 166747500 T A TTC21B Splice_Site p.X984_splice 0.37 TCGA-05-4397-01 2 167318937 167318937 A C SCN7A Missense_Mutation p.L349V 0.60 tolerated(0.07) probably_damaging(0.999) TCGA-05-4397-01 2 168725434 168725434 G T B3GALT1 5'Flank 0.43 TCGA-05-4397-01 2 170002408 170002408 G A LRP2 Silent p.I4279I 0.41 TCGA-05-4397-01 2 170489708 170489708 G C PPIG Missense_Mutation p.R323P 0.51 deleterious(0.02) unknown(0) TCGA-05-4397-01 2 170557488 170557488 A G PHOSPHO2 Missense_Mutation p.I3V 0.50 tolerated(0.19) benign(0.005) TCGA-05-4397-01 2 171716263 171716263 C A GAD1 Silent p.T552T 0.33 TCGA-05-4397-01 2 176987605 176987605 C T HOXD9 Missense_Mutation p.R37C 0.47 deleterious(0.02) probably_damaging(0.998) TCGA-05-4397-01 2 176987735 176987735 C A HOXD9 Missense_Mutation p.S80Y 0.38 deleterious(0) probably_damaging(0.967) TCGA-05-4397-01 2 178378551 178378551 G T AGPS Missense_Mutation p.V538L 0.23 tolerated(1) benign(0.001) TCGA-05-4397-01 2 179343127 179343127 C T FKBP7 Missense_Mutation p.E34K 0.38 deleterious(0) benign(0.22) TCGA-05-4397-01 2 179422207 179422207 G T TTN Missense_Mutation p.P29261Q 0.43 TCGA-05-4397-01 2 179422208 179422208 G T TTN Missense_Mutation p.P29261T 0.42 TCGA-05-4397-01 2 179427123 179427123 G T TTN Silent p.T27912T 0.38 TCGA-05-4397-01 2 179431317 179431317 A G TTN Silent p.D26514D 0.40 TCGA-05-4397-01 2 179441840 179441840 G A TTN Silent p.S23074S 0.42 TCGA-05-4397-01 2 179456358 179456358 G C TTN Missense_Mutation p.T20063R 0.35 TCGA-05-4397-01 2 179577936 179577952 GGTGGTCTGGTATTTCC A TTN Frame_Shift_Del p.R8970Ifs*2 0.24 TCGA-05-4397-01 2 179577952 179577952 C A TTN Missense_Mutation p.R8970M 0.28 TCGA-05-4397-01 2 179583172 179583172 T C TTN Missense_Mutation p.M8221V 0.41 TCGA-05-4397-01 2 179598188 179598188 C A TTN Missense_Mutation p.A5278S 0.39 TCGA-05-4397-01 2 179604494 179604494 G T TTN Missense_Mutation p.T4489K 0.40 TCGA-05-4397-01 2 179606578 179606578 T C TTN Missense_Mutation p.I3794M 0.55 TCGA-05-4397-01 2 179640522 179640522 C A TTN Missense_Mutation p.K2023N 0.43 TCGA-05-4397-01 2 179732787 179732787 A G CCDC141 Missense_Mutation p.L847S 0.46 deleterious(0.03) possibly_damaging(0.749) TCGA-05-4397-01 2 185800564 185800564 C A ZNF804A Missense_Mutation p.N147K 0.34 deleterious(0.01) probably_damaging(0.979) TCGA-05-4397-01 2 189872840 189872840 G A COL3A1 Missense_Mutation p.R1166Q 0.52 unknown(0) TCGA-05-4397-01 2 189898702 189898702 A G COL5A2 3'UTR 0.44 TCGA-05-4397-01 2 189929300 189929300 C A COL5A2 Missense_Mutation p.G567W 0.25 probably_damaging(1) TCGA-05-4397-01 2 190315685 190315685 C T WDR75 Silent p.I91I 0.32 TCGA-05-4397-01 2 1926072 1926072 G T MYT1L Missense_Mutation p.P490Q 0.35 tolerated(0.1) possibly_damaging(0.726) TCGA-05-4397-01 2 1926073 1926073 G T MYT1L Missense_Mutation p.P490T 0.35 tolerated(0.27) benign(0.138) TCGA-05-4397-01 2 20113375 20113375 C A WDR35 Missense_Mutation p.A1164S 0.40 tolerated(0.55) benign(0.207) TCGA-05-4397-01 2 207169613 207169613 C A ZDBF2 Missense_Mutation p.P121T 0.44 deleterious(0.01) possibly_damaging(0.641) TCGA-05-4397-01 2 207652825 207652825 G T FASTKD2 Nonsense_Mutation p.G587* 0.42 TCGA-05-4397-01 2 207652826 207652826 G T FASTKD2 Missense_Mutation p.G587V 0.39 deleterious(0) benign(0.07) TCGA-05-4397-01 2 208993022 208993022 A G CRYGC Missense_Mutation p.Y144H 0.42 deleterious(0.04) possibly_damaging(0.77) TCGA-05-4397-01 2 210642194 210642194 G T UNC80 Nonsense_Mutation p.E171* 0.44 TCGA-05-4397-01 2 212288914 212288914 G T ERBB4 Silent p.I944I 0.35 TCGA-05-4397-01 2 219602866 219602866 G C TTLL4 Missense_Mutation p.S156T 0.49 tolerated(0.54) benign(0.073) TCGA-05-4397-01 2 220149663 220149663 G C DNAJB2 Missense_Mutation p.R310P 0.46 tolerated_low_confidence(0.48) benign(0) TCGA-05-4397-01 2 220368852 220368852 C G GMPPA Missense_Mutation p.I179M 0.28 deleterious(0) probably_damaging(0.954) TCGA-05-4397-01 2 228004926 228004926 C G COL4A4 Missense_Mutation p.G48A 0.32 probably_damaging(0.971) TCGA-05-4397-01 2 228173983 228173983 T C COL4A3 Silent p.P1568P 0.51 TCGA-05-4397-01 2 229890756 229890756 G A PID1 Silent p.V113V 0.37 TCGA-05-4397-01 2 234846051 234846051 G T TRPM8 Missense_Mutation p.Q82H 0.45 tolerated(0.27) probably_damaging(0.969) TCGA-05-4397-01 2 236957706 236957706 C T AGAP1 Missense_Mutation p.P632L 0.44 deleterious(0) probably_damaging(1) TCGA-05-4397-01 2 238280656 238280656 C A COL6A3 Missense_Mutation p.G1335V 0.46 probably_damaging(0.998) TCGA-05-4397-01 2 242097260 242097260 C G PPP1R7 Missense_Mutation p.L74V 0.57 tolerated(0.16) possibly_damaging(0.562) TCGA-05-4397-01 2 26806683 26806683 C T CIB4 Missense_Mutation p.D138N 0.42 tolerated(0.28) benign(0.077) TCGA-05-4397-01 2 27303608 27303608 G A EMILIN1 Missense_Mutation p.R100H 0.60 benign(0.339) TCGA-05-4397-01 2 27306454 27306454 G A EMILIN1 Missense_Mutation p.G672D 0.46 possibly_damaging(0.905) TCGA-05-4397-01 2 27886959 27886959 G A SLC4A1AP Missense_Mutation p.G114R 0.47 tolerated(0.33) benign(0.01) TCGA-05-4397-01 2 28855839 28855839 C T PLB1 Missense_Mutation p.S1344F 0.38 deleterious(0) probably_damaging(0.991) TCGA-05-4397-01 2 30143288 30143288 G T ALK Missense_Mutation p.L80M 0.37 tolerated_low_confidence(0.26) benign(0.001) TCGA-05-4397-01 2 31805958 31805958 C A SRD5A2 RNA 0.38 TCGA-05-4397-01 2 32897384 32897384 G C TTC27 Missense_Mutation p.A329P 0.34 deleterious(0.01) possibly_damaging(0.786) TCGA-05-4397-01 2 40656956 40656956 T C SLC8A1 Silent p.E155E 0.42 TCGA-05-4397-01 2 45170024 45170024 G T SIX3 Missense_Mutation p.D261Y 0.33 deleterious(0) probably_damaging(1) TCGA-05-4397-01 2 46846808 46846809 - A CRIPT Frame_Shift_Ins p.A45Sfs*4 0.29 TCGA-05-4397-01 2 60987327 60987327 A T PAPOLG Missense_Mutation p.S26C 0.49 deleterious(0.02) probably_damaging(0.951) TCGA-05-4397-01 2 61315512 61315512 C A KIAA1841 Missense_Mutation p.L333I 0.26 tolerated(0.25) benign(0.38) TCGA-05-4397-01 2 64794785 64794785 G A AFTPH Silent p.L675L 0.41 TCGA-05-4397-01 2 64863200 64863200 G C SERTAD2 Nonsense_Mutation p.S269* 0.11 TCGA-05-4397-01 2 69002401 69002401 C A ARHGAP25 Missense_Mutation p.P37Q 0.39 tolerated(0.33) benign(0.003) TCGA-05-4397-01 2 70408798 70408798 A G C2orf42 Missense_Mutation p.I107T 0.42 deleterious(0.01) benign(0.227) TCGA-05-4397-01 2 73679045 73679045 G T ALMS1 Silent p.G1796G 0.42 TCGA-05-4397-01 2 79385532 79385532 C T REG3A Missense_Mutation p.G85R 0.42 deleterious(0) probably_damaging(0.997) TCGA-05-4397-01 3 101283640 101283640 C G TRMT10C Silent p.L5L 0.04 TCGA-05-4397-01 3 107491895 107491895 G A BBX Missense_Mutation p.A443T 0.31 tolerated(0.48) benign(0.001) TCGA-05-4397-01 3 115805239 115805239 C A LSAMP Missense_Mutation p.G107V 0.68 deleterious(0) probably_damaging(1) TCGA-05-4397-01 3 118865123 118865123 C A C3orf30 Silent p.G29G 0.58 TCGA-05-4397-01 3 118905622 118905622 C A UPK1B Missense_Mutation p.Q12K 0.25 tolerated(0.1) possibly_damaging(0.843) TCGA-05-4397-01 3 119013842 119013842 G A ARHGAP31 Missense_Mutation p.G31R 0.27 deleterious(0) possibly_damaging(0.866) TCGA-05-4397-01 3 119133386 119133386 C T ARHGAP31 Silent p.I870I 0.25 TCGA-05-4397-01 3 119466715 119466715 C T MAATS1 Silent p.I703I 0.12 TCGA-05-4397-01 3 120320114 120320114 C G NDUFB4 Intron 0.26 TCGA-05-4397-01 3 121838334 121838334 A G CD86 Missense_Mutation p.K315E 0.42 tolerated(0.06) unknown(0) TCGA-05-4397-01 3 122354971 122354971 T C PARP15 3'UTR 0.56 TCGA-05-4397-01 3 122419622 122419622 A G PARP14 Missense_Mutation p.K741E 0.29 tolerated(0.17) benign(0.015) TCGA-05-4397-01 3 122437240 122437240 A T PARP14 Missense_Mutation p.K1414N 0.26 deleterious(0.03) benign(0.424) TCGA-05-4397-01 3 123038571 123038571 G A ADCY5 Missense_Mutation p.H736Y 0.24 deleterious(0.05) possibly_damaging(0.733) TCGA-05-4397-01 3 130694302 130694302 A C ATP2C1 Missense_Mutation p.K548Q 0.66 deleterious(0.04) benign(0.02) TCGA-05-4397-01 3 130852750 130852750 G A NEK11 Missense_Mutation p.M199I 0.31 deleterious(0) probably_damaging(0.98) TCGA-05-4397-01 3 133191318 133191318 C T BFSP2 Nonsense_Mutation p.Q385* 0.30 TCGA-05-4397-01 3 138191516 138191516 T G ESYT3 Missense_Mutation p.S684R 0.25 tolerated(0.16) benign(0.393) TCGA-05-4397-01 3 138461618 138461618 G T PIK3CB Missense_Mutation p.H135N 0.59 deleterious(0) benign(0.051) TCGA-05-4397-01 3 138724871 138724871 C T PRR23A Silent p.L80L 0.29 TCGA-05-4397-01 3 143271268 143271268 C A SLC9A9 Missense_Mutation p.G342V 0.27 deleterious(0) probably_damaging(1) TCGA-05-4397-01 3 145790448 145790448 C G PLOD2 Missense_Mutation p.C583S 0.21 deleterious(0) probably_damaging(1) TCGA-05-4397-01 3 148459408 148459408 G T AGTR1 Missense_Mutation p.G196C 0.48 deleterious(0.01) probably_damaging(0.975) TCGA-05-4397-01 3 150644726 150644726 G T CLRN1 3'Flank 0.34 TCGA-05-4397-01 3 156009858 156009858 G T KCNAB1 Intron 0.33 TCGA-05-4397-01 3 158399993 158399993 G T GFM1 Intron 0.50 TCGA-05-4397-01 3 167413436 167413436 T A PDCD10 Missense_Mutation p.S115C 0.42 deleterious(0) probably_damaging(0.994) TCGA-05-4397-01 3 170928949 170928949 C A TNIK Missense_Mutation p.A88S 0.07 deleterious(0.03) unknown(0) TCGA-05-4397-01 3 172835341 172835341 C G SPATA16 Missense_Mutation p.E61Q 0.11 tolerated_low_confidence(0.09) possibly_damaging(0.607) TCGA-05-4397-01 3 172835417 172835417 C G SPATA16 Silent p.A35A 0.18 TCGA-05-4397-01 3 173997326 173997326 T C NLGN1 Missense_Mutation p.V512A 0.39 deleterious(0.01) probably_damaging(0.993) TCGA-05-4397-01 3 175293949 175293949 G C NAALADL2 Missense_Mutation p.A592P 0.31 tolerated(0.12) possibly_damaging(0.765) TCGA-05-4397-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.37 deleterious(0.02) probably_damaging(0.959) TCGA-05-4397-01 3 180397253 180397253 C T CCDC39 5'UTR 0.13 TCGA-05-4397-01 3 182575779 182575779 A G ATP11B Missense_Mutation p.Y322C 0.18 deleterious(0) probably_damaging(0.983) TCGA-05-4397-01 3 183474351 183474351 C T YEATS2 Missense_Mutation p.P476S 0.52 deleterious_low_confidence(0.01) possibly_damaging(0.787) TCGA-05-4397-01 3 184714270 184714270 G A VPS8 Missense_Mutation p.D1273N 0.05 tolerated(0.22) possibly_damaging(0.638) TCGA-05-4397-01 3 188327238 188327238 C G LPP Nonsense_Mutation p.S240* 0.06 TCGA-05-4397-01 3 189349318 189349318 C T TP63 Missense_Mutation p.T5I 0.10 tolerated_low_confidence(0.13) benign(0) TCGA-05-4397-01 3 191179171 191179171 C A PYDC2 Missense_Mutation p.Q74K 0.54 tolerated(0.14) benign(0.192) TCGA-05-4397-01 3 195935386 195935386 G A ZDHHC19 Missense_Mutation p.R152C 0.34 deleterious(0.04) possibly_damaging(0.534) TCGA-05-4397-01 3 197518272 197518272 C G LRCH3 Silent p.G41G 0.18 TCGA-05-4397-01 3 197616237 197616237 C G IQCG 3'UTR 0.24 TCGA-05-4397-01 3 33614712 33614712 C A CLASP2 Missense_Mutation p.Q872H 0.69 tolerated(0.21) probably_damaging(0.999) TCGA-05-4397-01 3 37033806 37033806 C G EPM2AIP1 Missense_Mutation p.E255Q 0.44 tolerated(0.07) probably_damaging(0.961) TCGA-05-4397-01 3 42727898 42727898 G T KLHL40 Missense_Mutation p.G263V 0.80 deleterious(0) probably_damaging(0.992) TCGA-05-4397-01 3 4699805 4699805 C T ITPR1 Intron 0.35 TCGA-05-4397-01 3 48665887 48665887 C T SLC26A6 Missense_Mutation p.E594K 0.66 tolerated(0.64) benign(0.008) TCGA-05-4397-01 3 49866483 49866483 C A TRAIP 3'UTR 0.79 TCGA-05-4397-01 3 52472194 52472194 G A SEMA3G Missense_Mutation p.R511W 0.68 deleterious(0.02) possibly_damaging(0.462) TCGA-05-4397-01 3 56675595 56675595 T A FAM208A Missense_Mutation p.T801S 0.78 tolerated(0.42) benign(0.005) TCGA-05-4397-01 3 64619165 64619165 C G ADAMTS9 Missense_Mutation p.V720L 0.65 deleterious(0) probably_damaging(0.973) TCGA-05-4397-01 3 97596395 97596395 G A CRYBG3 Silent p.Q171Q 0.08 TCGA-05-4397-01 3 97983473 97983473 A T OR5H6 Silent p.V115V 0.30 TCGA-05-4397-01 3 98072866 98072866 A T OR5K4 Missense_Mutation p.T57S 0.26 deleterious(0.05) benign(0.142) TCGA-05-4397-01 3 98109951 98109951 G T OR5K3 Missense_Mutation p.A148S 0.38 tolerated(1) benign(0.035) TCGA-05-4397-01 4 106473981 106473981 C T ARHGEF38 Missense_Mutation p.A20V 0.44 tolerated(0.7) benign(0.034) TCGA-05-4397-01 4 110791278 110791278 G A LRIT3 Missense_Mutation p.G458E 0.45 deleterious(0.03) probably_damaging(0.995) TCGA-05-4397-01 4 113554393 113554393 T C C4orf21 5'UTR 0.30 TCGA-05-4397-01 4 115773903 115773903 T A NDST4 Silent p.L598L 0.28 TCGA-05-4397-01 4 122681466 122681466 T C TMEM155 Missense_Mutation p.I126V 0.43 tolerated_low_confidence(0.08) benign(0.004) TCGA-05-4397-01 4 122722599 122722599 C G EXOSC9 Nonsense_Mutation p.S7* 0.06 TCGA-05-4397-01 4 123175388 123175388 A G KIAA1109 Silent p.L1987L 0.30 TCGA-05-4397-01 4 13616150 13616150 C G BOD1L1 Missense_Mutation p.D282H 0.78 probably_damaging(0.986) TCGA-05-4397-01 4 152640682 152640682 G C PET112 Missense_Mutation p.N112K 0.40 deleterious(0) probably_damaging(1) TCGA-05-4397-01 4 153303398 153303398 C G FBXW7 Intron 0.25 TCGA-05-4397-01 4 156831336 156831336 G T TDO2 Missense_Mutation p.Q197H 0.36 tolerated(0.06) benign(0.049) TCGA-05-4397-01 4 156841118 156841118 C A TDO2 Nonsense_Mutation p.Y399* 0.53 TCGA-05-4397-01 4 159076790 159076790 C T FAM198B Silent p.K374K 0.39 TCGA-05-4397-01 4 15937647 15937647 C A FGFBP1 Missense_Mutation p.M203I 0.75 tolerated(0.21) benign(0.003) TCGA-05-4397-01 4 15937648 15937648 A T FGFBP1 Missense_Mutation p.M203K 0.75 deleterious(0) benign(0.018) TCGA-05-4397-01 4 169923276 169923276 C A CBR4 Missense_Mutation p.A161S 0.36 tolerated(1) benign(0.02) TCGA-05-4397-01 4 170652852 170652852 C G C4orf27 Intron 0.28 TCGA-05-4397-01 4 170652908 170652908 C G C4orf27 Missense_Mutation p.D286H 0.18 deleterious(0) probably_damaging(0.998) TCGA-05-4397-01 4 170652995 170652995 C G C4orf27 Missense_Mutation p.E257Q 0.29 deleterious(0.03) possibly_damaging(0.826) TCGA-05-4397-01 4 177049936 177049936 C A WDR17 Missense_Mutation p.P304T 0.14 deleterious(0) probably_damaging(0.999) TCGA-05-4397-01 4 177100852 177100852 G T WDR17 3'UTR 0.50 TCGA-05-4397-01 4 183635384 183635384 G T TENM3 Missense_Mutation p.G789V 0.36 deleterious(0) probably_damaging(0.972) TCGA-05-4397-01 4 187077213 187077213 G T FAM149A Missense_Mutation p.G148V 0.37 deleterious(0) probably_damaging(0.998) TCGA-05-4397-01 4 2935498 2935498 C G MFSD10 Missense_Mutation p.E51D 0.64 tolerated(0.89) probably_damaging(0.996) TCGA-05-4397-01 4 38907405 38907405 G T FAM114A1 Missense_Mutation p.A194S 0.74 tolerated(0.53) benign(0.042) TCGA-05-4397-01 4 48996751 48996751 C A CWH43 Silent p.T209T 0.76 TCGA-05-4397-01 4 55130019 55130019 G T PDGFRA Missense_Mutation p.G185W 0.51 deleterious(0.01) probably_damaging(1) TCGA-05-4397-01 4 59969 59969 C A ZNF595 Missense_Mutation p.P50Q 0.10 deleterious_low_confidence(0.03) possibly_damaging(0.809) TCGA-05-4397-01 4 62758560 62758560 C G LPHN3 Missense_Mutation p.S488W 0.42 deleterious(0) possibly_damaging(0.686) TCGA-05-4397-01 4 62845363 62845390 GCATCTTCACATTTTGCTTTTTCCGGGG - LPHN3 Frame_Shift_Del p.I896Sfs*18 0.20 TCGA-05-4397-01 4 66356361 66356361 G T EPHA5 Missense_Mutation p.P379Q 0.15 deleterious(0.03) possibly_damaging(0.65) TCGA-05-4397-01 4 67142539 67142539 C A MIR1269A 5'Flank 0.37 TCGA-05-4397-01 4 68500215 68500215 T C UBA6 Missense_Mutation p.I622V 0.21 tolerated(0.13) probably_damaging(0.923) TCGA-05-4397-01 4 68797731 68797731 C G TMPRSS11A Missense_Mutation p.K103N 0.29 tolerated(0.11) benign(0.033) TCGA-05-4397-01 4 69417582 69417582 A T UGT2B17 Missense_Mutation p.N351K 0.72 deleterious(0) probably_damaging(0.999) TCGA-05-4397-01 4 71201045 71201045 A G CABS1 Missense_Mutation p.T97A 0.45 tolerated(0.16) possibly_damaging(0.866) TCGA-05-4397-01 4 72623761 72623761 C A GC Nonsense_Mutation p.E296* 0.36 TCGA-05-4397-01 4 74043232 74043232 C A ANKRD17 Missense_Mutation p.D138Y 0.32 possibly_damaging(0.852) TCGA-05-4397-01 4 76439535 76439535 C A RCHY1 5'UTR 0.60 TCGA-05-4397-01 4 79403083 79403083 C T FRAS1 Missense_Mutation p.R2857W 0.39 possibly_damaging(0.832) TCGA-05-4397-01 4 83602054 83602054 G A SCD5 Silent p.F125F 0.29 TCGA-05-4397-01 4 8390969 8390969 C A ACOX3 Missense_Mutation p.D490Y 0.79 deleterious(0.01) benign(0.027) TCGA-05-4397-01 4 85701338 85701338 C A WDFY3 Missense_Mutation p.A1430S 0.30 tolerated(0.16) possibly_damaging(0.464) TCGA-05-4397-01 4 89192290 89192290 C A PPM1K Intron 0.45 TCGA-05-4397-01 4 89311943 89311943 C A HERC6 Missense_Mutation p.H192Q 0.09 deleterious(0) probably_damaging(1) TCGA-05-4397-01 4 89338598 89338598 A C HERC6 Missense_Mutation p.Q527P 0.36 tolerated(0.18) benign(0.01) TCGA-05-4397-01 4 90874329 90874329 C A MMRN1 Nonsense_Mutation p.Y1149* 0.23 TCGA-05-4397-01 4 94137997 94137997 C T GRID2 Missense_Mutation p.R300C 0.24 deleterious(0) probably_damaging(0.954) TCGA-05-4397-01 5 102432295 102432295 G A GIN1 Missense_Mutation p.P415L 0.68 deleterious(0) probably_damaging(0.993) TCGA-05-4397-01 5 110083920 110083920 A C SLC25A46 Silent p.T173T 0.64 TCGA-05-4397-01 5 112175225 112175225 G C APC Missense_Mutation p.G1312R 0.79 possibly_damaging(0.729) TCGA-05-4397-01 5 115361834 115361834 C T AQPEP 3'UTR 0.93 TCGA-05-4397-01 5 126783278 126783278 G A MEGF10 Missense_Mutation p.A920T 0.41 tolerated(0.35) benign(0.001) TCGA-05-4397-01 5 127626463 127626463 A T FBN2 Missense_Mutation p.W2136R 0.35 deleterious(0) probably_damaging(0.998) TCGA-05-4397-01 5 134785271 134785271 G A TIFAB Missense_Mutation p.T120I 0.35 tolerated(0.28) benign(0.003) TCGA-05-4397-01 5 13751251 13751251 A C DNAH5 Missense_Mutation p.F3716C 0.38 probably_damaging(0.926) TCGA-05-4397-01 5 137519015 137519015 G C KIF20A Silent p.R330R 0.33 TCGA-05-4397-01 5 13823414 13823414 G A DNAH5 Silent p.D2215D 0.46 TCGA-05-4397-01 5 140182821 140182821 C G PCDHA3 Missense_Mutation p.S680C 0.40 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-05-4397-01 5 140229828 140229828 G T PCDHA9 Missense_Mutation p.R583L 0.38 tolerated_low_confidence(0.08) possibly_damaging(0.564) TCGA-05-4397-01 5 140531911 140531911 G C PCDHB6 Silent p.A691A 0.38 TCGA-05-4397-01 5 140605336 140605336 G T PCDHB14 Silent p.V753V 0.40 TCGA-05-4397-01 5 140627001 140627002 GC - PCDHB15 Frame_Shift_Del p.H620Qfs*140 0.40 TCGA-05-4397-01 5 140719051 140719051 A T PCDHGA2 Silent p.A171A 0.34 TCGA-05-4397-01 5 140719959 140719959 T C PCDHGA2 Missense_Mutation p.V474A 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.82) TCGA-05-4397-01 5 140720708 140720708 C G PCDHGA2 Missense_Mutation p.L724V 0.41 tolerated_low_confidence(0.12) benign(0.008) TCGA-05-4397-01 5 140723873 140723873 C A PCDHGA3 Missense_Mutation p.D91E 0.41 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-05-4397-01 5 140750326 140750326 T A PCDHGB3 Missense_Mutation p.L122Q 0.41 tolerated(0.32) benign(0.171) TCGA-05-4397-01 5 140794977 140794977 G T PCDHGA10 Silent p.V745V 0.47 TCGA-05-4397-01 5 141303535 141303535 G A KIAA0141 Missense_Mutation p.R10Q 0.50 deleterious(0.01) unknown(0) TCGA-05-4397-01 5 142780341 142780341 C A NR3C1 Nonsense_Mutation p.E22* 0.32 TCGA-05-4397-01 5 143543672 143543672 T C YIPF5 Intron 0.24 TCGA-05-4397-01 5 145202688 145202688 G T PRELID2 Missense_Mutation p.P29T 0.13 deleterious(0.03) possibly_damaging(0.772) TCGA-05-4397-01 5 149515439 149515439 C A PDGFRB Nonsense_Mutation p.E15* 0.41 TCGA-05-4397-01 5 149631370 149631370 C A CAMK2A Silent p.P212P 0.25 TCGA-05-4397-01 5 150715005 150715005 G T SLC36A2 Missense_Mutation p.P210H 0.36 deleterious(0) probably_damaging(1) TCGA-05-4397-01 5 151043710 151043710 T G SPARC Missense_Mutation p.D274A 0.42 deleterious(0) possibly_damaging(0.873) TCGA-05-4397-01 5 154395249 154395249 T C KIF4B Silent p.A610A 0.49 TCGA-05-4397-01 5 154395250 154395250 G T KIF4B Missense_Mutation p.D611Y 0.50 deleterious(0) possibly_damaging(0.757) TCGA-05-4397-01 5 156476144 156476144 G A HAVCR1 Missense_Mutation p.P229L 0.34 deleterious(0.01) probably_damaging(0.958) TCGA-05-4397-01 5 156679624 156679624 A G ITK Missense_Mutation p.E600G 0.35 deleterious(0) possibly_damaging(0.64) TCGA-05-4397-01 5 160031019 160031019 G T ATP10B Missense_Mutation p.Q1064K 0.36 deleterious(0.01) possibly_damaging(0.794) TCGA-05-4397-01 5 160097559 160097559 G A ATP10B Missense_Mutation p.P196S 0.43 deleterious(0.03) probably_damaging(0.967) TCGA-05-4397-01 5 16067851 16067851 C - MARCH11 Frame_Shift_Del p.R313Qfs*3 0.34 TCGA-05-4397-01 5 16508688 16508688 T C FAM134B Intron 0.39 TCGA-05-4397-01 5 167553854 167553854 G T TENM2 Missense_Mutation p.V769L 0.45 tolerated(0.1) benign(0.009) TCGA-05-4397-01 5 167943903 167943903 G A RARS Missense_Mutation p.D525N 0.38 tolerated(0.3) probably_damaging(0.968) TCGA-05-4397-01 5 168187941 168187941 C T SLIT3 Silent p.L537L 0.34 TCGA-05-4397-01 5 168310299 168310299 C T SLIT3 Silent p.A152A 0.36 TCGA-05-4397-01 5 176765534 176765534 C A LMAN2 Nonsense_Mutation p.G130* 0.42 TCGA-05-4397-01 5 176831231 176831231 C T F12 Silent p.T328T 0.25 TCGA-05-4397-01 5 177474230 177474230 A T FAM153C Intron 0.45 TCGA-05-4397-01 5 177576618 177576618 G C NHP2 3'UTR 0.53 TCGA-05-4397-01 5 178552120 178552120 G T ADAMTS2 Missense_Mutation p.R938S 0.34 deleterious(0) probably_damaging(1) TCGA-05-4397-01 5 180048182 180048182 C A FLT4 Missense_Mutation p.M697I 0.54 deleterious(0.05) probably_damaging(0.999) TCGA-05-4397-01 5 23522995 23522995 G T PRDM9 Splice_Site p.X294_splice 0.46 TCGA-05-4397-01 5 24511577 24511577 G T CDH10 Silent p.A287A 0.32 TCGA-05-4397-01 5 26885756 26885756 C G CDH9 Missense_Mutation p.V617L 0.39 tolerated(0.13) benign(0.004) TCGA-05-4397-01 5 31538419 31538419 G T C5orf22 Missense_Mutation p.D144Y 0.32 deleterious(0) probably_damaging(0.964) TCGA-05-4397-01 5 31799670 31799670 G C PDZD2 Missense_Mutation p.K105N 0.40 deleterious(0) probably_damaging(0.999) TCGA-05-4397-01 5 33576960 33576960 G T ADAMTS12 Silent p.S1057S 0.31 TCGA-05-4397-01 5 37328457 37328457 T A NUP155 Intron 0.60 TCGA-05-4397-01 5 39288979 39288979 G A C9 Silent p.A497A 0.16 TCGA-05-4397-01 5 40937675 40937675 G T C7 Missense_Mutation p.Q150H 0.39 deleterious(0.01) possibly_damaging(0.519) TCGA-05-4397-01 5 44305241 44305241 G T FGF10 Nonsense_Mutation p.Y161* 0.42 TCGA-05-4397-01 5 45645362 45645362 C G HCN1 Missense_Mutation p.R258S 0.30 deleterious(0) probably_damaging(0.994) TCGA-05-4397-01 5 5146429 5146429 C A ADAMTS16 Missense_Mutation p.P121H 0.49 deleterious(0.01) probably_damaging(0.989) TCGA-05-4397-01 5 55056085 55056085 G T DDX4 Missense_Mutation p.G62V 0.76 deleterious_low_confidence(0) possibly_damaging(0.703) TCGA-05-4397-01 5 72851384 72851384 C T ANKRA2 Missense_Mutation p.E181K 0.39 tolerated(0.5) probably_damaging(0.987) TCGA-05-4397-01 5 7727279 7727279 C A ADCY2 Nonsense_Mutation p.Y592* 0.33 TCGA-05-4397-01 5 77385316 77385316 T A AP3B1 Silent p.P826P 0.38 TCGA-05-4397-01 5 82940463 82940463 G T HAPLN1 Missense_Mutation p.P165Q 0.38 deleterious(0) probably_damaging(0.978) TCGA-05-4397-01 5 90119264 90119264 T - GPR98 Frame_Shift_Del p.W5408Gfs*17 0.38 TCGA-05-4397-01 5 95067575 95067575 C T RHOBTB3 Silent p.I5I 0.06 TCGA-05-4397-01 6 10419782 10419782 T A TFAP2A 5'Flank 0.20 TCGA-05-4397-01 6 107391998 107391998 C A BEND3 Missense_Mutation p.G133C 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.9) TCGA-05-4397-01 6 118475757 118475757 A G SLC35F1 Missense_Mutation p.Y108C 0.41 deleterious(0) probably_damaging(0.992) TCGA-05-4397-01 6 118598709 118598709 G - SLC35F1 Frame_Shift_Del 0.30 TCGA-05-4397-01 6 125144577 125144577 T C NKAIN2 3'UTR 0.31 TCGA-05-4397-01 6 127765277 127765277 G C KIAA0408 Missense_Mutation p.R688G 0.45 tolerated(0.07) benign(0.019) TCGA-05-4397-01 6 128312508 128312508 G C PTPRK Missense_Mutation p.F976L 0.18 deleterious(0) probably_damaging(0.991) TCGA-05-4397-01 6 128411061 128411061 C A PTPRK Missense_Mutation p.L413F 0.33 tolerated(0.57) probably_damaging(0.994) TCGA-05-4397-01 6 129663545 129663545 G A LAMA2 Missense_Mutation p.G1457R 0.37 deleterious(0.01) probably_damaging(0.988) TCGA-05-4397-01 6 129950633 129950633 C A ARHGAP18 Silent p.L217L 0.48 TCGA-05-4397-01 6 133044201 133044201 A G VNN3 Intron 0.38 TCGA-05-4397-01 6 134496001 134496001 C G SGK1 Intron 0.45 TCGA-05-4397-01 6 13470560 13470560 C A AL583828.1 5'UTR 0.58 TCGA-05-4397-01 6 135522779 135522779 G - MYB Frame_Shift_Del p.E652Nfs*21 0.25 TCGA-05-4397-01 6 144508681 144508681 A C STX11 3'UTR 0.44 TCGA-05-4397-01 6 152737697 152737697 C A SYNE1 Missense_Mutation p.V1959L 0.40 benign(0.001) TCGA-05-4397-01 6 160679775 160679775 C A SLC22A2 Silent p.V5V 0.43 TCGA-05-4397-01 6 161027594 161027594 C T LPA Silent p.L900L 0.27 TCGA-05-4397-01 6 163736062 163736062 G T PACRG 3'UTR 0.47 TCGA-05-4397-01 6 163983080 163983080 A G QKI Missense_Mutation p.R205G 0.38 deleterious(0) benign(0) TCGA-05-4397-01 6 167753987 167753987 A G TTLL2 Missense_Mutation p.Q200R 0.39 tolerated(0.12) possibly_damaging(0.598) TCGA-05-4397-01 6 168431482 168431482 C T KIF25 Missense_Mutation p.A41V 0.41 tolerated(0.33) benign(0.021) TCGA-05-4397-01 6 170592416 170592416 C A DLL1 Missense_Mutation p.D651Y 0.46 deleterious(0.01) possibly_damaging(0.524) TCGA-05-4397-01 6 26285712 26285712 T C HIST1H4H Missense_Mutation p.K6E 0.40 deleterious_low_confidence(0.01) benign(0.033) TCGA-05-4397-01 6 26598745 26598745 C T ABT1 Missense_Mutation p.R231C 0.24 deleterious(0.01) possibly_damaging(0.62) TCGA-05-4397-01 6 28543098 28543098 C A SCAND3 Missense_Mutation p.G462W 0.47 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-05-4397-01 6 31592974 31592974 C A PRRC2A Silent p.R164R 0.48 TCGA-05-4397-01 6 31631770 31631770 G A GPANK1 Silent p.L162L 0.12 TCGA-05-4397-01 6 32029430 32029430 C A TNXB Silent p.P2412P 0.33 TCGA-05-4397-01 6 33244282 33244282 C T RPS18 3'UTR 0.47 TCGA-05-4397-01 6 33282996 33282996 C A ZBTB22 Silent p.R566R 0.41 TCGA-05-4397-01 6 38863991 38863991 T C DNAH8 Missense_Mutation p.I2760T 0.42 benign(0.167) TCGA-05-4397-01 6 39082790 39082790 G A SAYSD1 Nonsense_Mutation p.Q26* 0.28 TCGA-05-4397-01 6 41908796 41908796 C A CCND3 Intron 0.35 TCGA-05-4397-01 6 44200166 44200166 G A SLC29A1 Splice_Site p.X353_splice 0.43 TCGA-05-4397-01 6 46806815 46806815 G C MEP1A Missense_Mutation p.G728A 0.03 tolerated(0.4) benign(0.102) TCGA-05-4397-01 6 47846756 47846756 C A PTCHD4 Missense_Mutation p.L608F 0.35 tolerated(0.77) benign(0.077) TCGA-05-4397-01 6 4892563 4892563 C T CDYL Missense_Mutation p.P214L 0.39 tolerated(0.18) benign(0.02) TCGA-05-4397-01 6 51524215 51524215 G A PKHD1 Missense_Mutation p.S3570L 0.14 tolerated(0.08) benign(0.035) TCGA-05-4397-01 6 52871150 52871150 C T ICK Silent p.Q569Q 0.14 TCGA-05-4397-01 6 57512650 57512650 C A PRIM2 3'UTR 0.14 TCGA-05-4397-01 6 63990184 63990184 A T LGSN Silent p.V424V 0.47 TCGA-05-4397-01 6 70040437 70040437 T C BAI3 Silent p.F1025F 0.35 TCGA-05-4397-01 6 70926640 70926640 T G COL9A1 Missense_Mutation p.Q909P 0.32 probably_damaging(0.939) TCGA-05-4397-01 6 86176908 86176908 T C NT5E Missense_Mutation p.L157P 0.46 tolerated(0.06) probably_damaging(0.936) TCGA-05-4397-01 6 86223826 86223826 T A SNX14 Missense_Mutation p.Q840L 0.42 tolerated(0.09) probably_damaging(0.93) TCGA-05-4397-01 6 87725435 87725435 T C HTR1E Missense_Mutation p.I128T 0.40 deleterious(0) benign(0.142) TCGA-05-4397-01 6 89324034 89324034 C T RNGTT Silent p.Q529Q 0.43 TCGA-05-4397-01 6 89790770 89790770 C T PNRC1 Missense_Mutation p.P53S 0.42 tolerated_low_confidence(0.31) benign(0.104) TCGA-05-4397-01 6 89872060 89872060 G T PM20D2 3'UTR 0.45 TCGA-05-4397-01 6 96651667 96651667 C A FUT9 Missense_Mutation p.S212R 0.40 deleterious(0.01) benign(0.088) TCGA-05-4397-01 7 100033311 100033311 G T PPP1R35 Silent p.A177A 0.29 TCGA-05-4397-01 7 100730380 100730380 G T TRIM56 5'UTR 0.47 TCGA-05-4397-01 7 103276759 103276759 G T RELN Silent p.A742A 0.36 TCGA-05-4397-01 7 106526625 106526625 A G PIK3CG Missense_Mutation p.K973R 0.39 deleterious(0.01) benign(0.314) TCGA-05-4397-01 7 107398942 107398942 A G CBLL1 Silent p.A265A 0.44 TCGA-05-4397-01 7 112724477 112724477 C A GPR85 Silent p.L100L 0.34 TCGA-05-4397-01 7 11468641 11468641 G A THSD7A Missense_Mutation p.S1059F 0.36 deleterious(0) probably_damaging(0.954) TCGA-05-4397-01 7 11501698 11501698 C A THSD7A Missense_Mutation p.C814F 0.40 deleterious(0) probably_damaging(1) TCGA-05-4397-01 7 117067532 117067532 C A ASZ1 5'UTR 0.44 TCGA-05-4397-01 7 121942184 121942184 G T FEZF1 Missense_Mutation p.T432K 0.26 tolerated(0.14) unknown(0) TCGA-05-4397-01 7 122635274 122635274 C G TAS2R16 Missense_Mutation p.V139L 0.38 tolerated(0.6) benign(0.324) TCGA-05-4397-01 7 123302795 123302795 T A LMOD2 Silent p.P385P 0.41 TCGA-05-4397-01 7 126173425 126173425 T A GRM8 Missense_Mutation p.N671Y 0.43 deleterious(0) probably_damaging(1) TCGA-05-4397-01 7 134925343 134925343 C T STRA8 Nonsense_Mutation p.Q45* 0.34 TCGA-05-4397-01 7 135290909 135290909 T C NUP205 Missense_Mutation p.L947P 0.40 deleterious(0) probably_damaging(0.998) TCGA-05-4397-01 7 13935459 13935459 C A ETV1 3'UTR 0.31 TCGA-05-4397-01 7 140246714 140246714 C T DENND2A Missense_Mutation p.R688Q 0.31 deleterious(0) probably_damaging(1) TCGA-05-4397-01 7 14216479 14216479 C G DGKB Missense_Mutation p.M764I 0.41 deleterious(0.04) benign(0.024) TCGA-05-4397-01 7 143268923 143268923 G T CTAGE15 Missense_Mutation p.G5C 0.24 deleterious_low_confidence(0.02) probably_damaging(0.953) TCGA-05-4397-01 7 143657783 143657783 G T OR2F1 Silent p.T240T 0.38 TCGA-05-4397-01 7 143792896 143792896 C A OR2A12 Silent p.G232G 0.42 TCGA-05-4397-01 7 149508066 149508066 G T SSPO RNA 0.81 TCGA-05-4397-01 7 151962241 151962241 G T KMT2C Missense_Mutation p.Q356K 0.09 probably_damaging(0.983) TCGA-05-4397-01 7 151970897 151970897 C A KMT2C Missense_Mutation p.C302F 0.07 probably_damaging(0.999) TCGA-05-4397-01 7 15427053 15427053 C A AGMO Missense_Mutation p.G312V 0.34 deleterious(0) probably_damaging(1) TCGA-05-4397-01 7 158540942 158540942 C A ESYT2 Missense_Mutation p.W556C 0.88 deleterious(0) probably_damaging(0.999) TCGA-05-4397-01 7 21779201 21779201 G T DNAH11 Missense_Mutation p.Q2615H 0.48 benign(0.073) TCGA-05-4397-01 7 25194768 25194768 G A C7orf31 Missense_Mutation p.H153Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-05-4397-01 7 25264661 25264661 A T NPVF 3'UTR 0.37 TCGA-05-4397-01 7 27565754 27565754 A G HIBADH 3'UTR 0.26 TCGA-05-4397-01 7 31864497 31864497 C A PDE1C Nonsense_Mutation p.G524* 0.43 TCGA-05-4397-01 7 38424511 38424511 C A AMPH Missense_Mutation p.V666L 0.38 tolerated(0.06) benign(0.088) TCGA-05-4397-01 7 38791787 38791787 G A VPS41 Missense_Mutation p.P639S 0.38 tolerated(0.08) probably_damaging(0.981) TCGA-05-4397-01 7 41740080 41740080 G T INHBA 5'UTR 0.45 TCGA-05-4397-01 7 44190624 44190624 C A GCK Missense_Mutation p.Q139H 0.41 tolerated(0.08) benign(0.001) TCGA-05-4397-01 7 44282850 44282850 A T CAMK2B Nonsense_Mutation p.C200* 0.34 TCGA-05-4397-01 7 4780536 4780536 G T FOXK1 Missense_Mutation p.A210S 0.45 tolerated(0.12) benign(0.082) TCGA-05-4397-01 7 4950852 4950852 A G MMD2 Missense_Mutation p.W131R 0.40 deleterious(0.04) possibly_damaging(0.61) TCGA-05-4397-01 7 64453245 64453245 C G ERV3-1 Missense_Mutation p.A54P 0.40 tolerated(0.31) benign(0.332) TCGA-05-4397-01 7 72267537 72267537 C A TYW1B Nonsense_Mutation p.E242* 0.39 TCGA-05-4397-01 7 79818431 79818431 G T GNAI1 Nonsense_Mutation p.E63* 0.47 TCGA-05-4397-01 7 82544020 82544020 C A PCLO Missense_Mutation p.A4428S 0.43 unknown(0) TCGA-05-4397-01 7 82581186 82581186 C A PCLO Missense_Mutation p.G3028V 0.35 unknown(0) TCGA-05-4397-01 7 905691 905691 G A SUN1 Missense_Mutation p.R656H 0.51 deleterious(0) probably_damaging(0.991) TCGA-05-4397-01 7 92844989 92844989 G C HEPACAM2 Missense_Mutation p.T147R 0.22 deleterious(0) benign(0.003) TCGA-05-4397-01 7 96303020 96303020 C A SHFM1 3'UTR 0.47 TCGA-05-4397-01 7 99220250 99220250 C A ZSCAN25 Missense_Mutation p.T223N 0.50 tolerated(0.05) benign(0.074) TCGA-05-4397-01 7 99802356 99802356 C A STAG3 Missense_Mutation p.P970H 0.35 deleterious(0.01) benign(0.211) TCGA-05-4397-01 8 10177494 10177494 C T MSRA Nonsense_Mutation p.Q180* 0.24 TCGA-05-4397-01 8 107752601 107752601 G T OXR1 Missense_Mutation p.G733C 0.37 deleterious(0) probably_damaging(1) TCGA-05-4397-01 8 110576863 110576863 A T EBAG9 3'UTR 0.45 TCGA-05-4397-01 8 113668392 113668392 G T CSMD3 Missense_Mutation p.H999N 0.27 tolerated(0.15) possibly_damaging(0.877) TCGA-05-4397-01 8 120803609 120803609 C A TAF2 Silent p.V456V 0.32 TCGA-05-4397-01 8 124132407 124132407 G C TBC1D31 Missense_Mutation p.E517Q 0.43 deleterious(0) probably_damaging(0.996) TCGA-05-4397-01 8 124381404 124381404 G A ATAD2 Nonsense_Mutation p.Q315* 0.12 TCGA-05-4397-01 8 125603417 125603417 C A MTSS1 Nonsense_Mutation p.E90* 0.52 TCGA-05-4397-01 8 133771110 133771110 G C TMEM71 Missense_Mutation p.Q6E 0.25 deleterious(0.02) possibly_damaging(0.469) TCGA-05-4397-01 8 139144919 139144919 G T FAM135B Silent p.R1380R 0.45 TCGA-05-4397-01 8 139164452 139164452 C G FAM135B Missense_Mutation p.E756Q 0.45 deleterious(0) probably_damaging(0.998) TCGA-05-4397-01 8 139164698 139164698 C G FAM135B Missense_Mutation p.G674R 0.32 deleterious(0.03) benign(0.099) TCGA-05-4397-01 8 139629159 139629159 G - COL22A1 Frame_Shift_Del p.R1290Gfs*138 0.27 TCGA-05-4397-01 8 142432293 142432293 G T PTP4A3 5'UTR 0.37 TCGA-05-4397-01 8 143846019 143846019 G T LYNX1 3'UTR 0.42 TCGA-05-4397-01 8 144358399 144358399 G C GLI4 Missense_Mutation p.E186Q 0.67 deleterious(0.02) possibly_damaging(0.551) TCGA-05-4397-01 8 144733168 144733168 G C ZNF623 Missense_Mutation p.E376Q 0.08 tolerated(0.11) probably_damaging(0.982) TCGA-05-4397-01 8 144991960 144991961 GC - PLEC Frame_Shift_Del p.A4147Rfs*46 0.37 TCGA-05-4397-01 8 145113186 145113186 T C OPLAH Missense_Mutation p.Y302C 0.33 deleterious(0) benign(0.149) TCGA-05-4397-01 8 15480671 15480671 G T TUSC3 Missense_Mutation p.R74L 0.44 deleterious(0.01) possibly_damaging(0.811) TCGA-05-4397-01 8 15998538 15998538 A G MSR1 Intron 0.42 TCGA-05-4397-01 8 17228696 17228696 G A MTMR7 Nonsense_Mutation p.Q54* 0.38 TCGA-05-4397-01 8 20004895 20004895 G T SLC18A1 Silent p.S446S 0.38 TCGA-05-4397-01 8 25222219 25222219 A T DOCK5 Missense_Mutation p.Q1041L 0.55 deleterious(0) possibly_damaging(0.881) TCGA-05-4397-01 8 30703090 30703090 T A TEX15 Silent p.S1148S 0.42 TCGA-05-4397-01 8 30706080 30706080 G T TEX15 Missense_Mutation p.Q152K 0.37 tolerated(0.06) benign(0.249) TCGA-05-4397-01 8 30890181 30890181 G C PURG Missense_Mutation p.P40A 0.25 deleterious(0.04) benign(0.039) TCGA-05-4397-01 8 32620796 32620796 C A NRG1 Intron 0.38 TCGA-05-4397-01 8 41550662 41550662 G C ANK1 Missense_Mutation p.A1238G 0.12 deleterious(0) possibly_damaging(0.693) TCGA-05-4397-01 8 42620311 42620311 T C CHRNA6 Missense_Mutation p.H39R 0.45 tolerated(0.47) benign(0.009) TCGA-05-4397-01 8 43047444 43047444 T A HGSNAT Intron 0.33 TCGA-05-4397-01 8 48647874 48647874 C G SPIDR Nonsense_Mutation p.Y870* 0.42 TCGA-05-4397-01 8 48733455 48733455 T G PRKDC Missense_Mutation p.Q3053P 0.30 benign(0.306) TCGA-05-4397-01 8 52469407 52469407 C G PXDNL Missense_Mutation p.E125Q 0.22 deleterious(0) probably_damaging(0.951) TCGA-05-4397-01 8 57080660 57080660 T C PLAG1 Missense_Mutation p.T57A 0.57 tolerated(0.09) probably_damaging(0.973) TCGA-05-4397-01 8 59358602 59358602 A T UBXN2B Missense_Mutation p.I270L 0.40 tolerated(0.07) benign(0.331) TCGA-05-4397-01 8 59409478 59409478 T C CYP7A1 Missense_Mutation p.Q198R 0.34 tolerated(0.29) possibly_damaging(0.564) TCGA-05-4397-01 8 6389855 6389855 G T ANGPT2 Missense_Mutation p.Q148K 0.36 tolerated(0.07) possibly_damaging(0.496) TCGA-05-4397-01 8 67089174 67089174 A T CRH Nonsense_Mutation p.L180* 0.40 TCGA-05-4397-01 8 67488548 67488548 G C MYBL1 Missense_Mutation p.I388M 0.03 tolerated(0.12) benign(0.104) TCGA-05-4397-01 8 6794318 6794318 C A DEFA4 Missense_Mutation p.R35L 0.42 tolerated(0.24) benign(0.153) TCGA-05-4397-01 8 72975803 72975803 T C TRPA1 Missense_Mutation p.K186E 0.51 tolerated(0.9) benign(0.001) TCGA-05-4397-01 8 73849879 73849879 G T KCNB2 Missense_Mutation p.Q763H 0.44 tolerated_low_confidence(0.54) benign(0) TCGA-05-4397-01 8 77767525 77767525 G A ZFHX4 Missense_Mutation p.E2790K 0.34 benign(0.049) TCGA-05-4397-01 8 87229891 87229891 T A SLC7A13 Silent p.T329T 0.42 TCGA-05-4397-01 8 88296931 88296931 C G CNBD1 Missense_Mutation p.T266S 0.67 tolerated(0.42) benign(0.054) TCGA-05-4397-01 8 88885768 88885768 C G DCAF4L2 Silent p.L144L 0.44 TCGA-05-4397-01 8 95412520 95412520 T A RAD54B Missense_Mutation p.K372N 0.51 tolerated(0.09) probably_damaging(0.931) TCGA-05-4397-01 8 95539314 95539314 T A KIAA1429 Silent p.T386T 0.46 TCGA-05-4397-01 9 105767808 105767808 G T CYLC2 Missense_Mutation p.D299Y 0.44 deleterious(0.01) unknown(0) TCGA-05-4397-01 9 107618338 107618338 C G ABCA1 Intron 0.37 TCGA-05-4397-01 9 115337153 115337153 G A KIAA1958 Missense_Mutation p.D265N 0.41 tolerated(0.08) benign(0.023) TCGA-05-4397-01 9 117086000 117086000 T G ORM1 Missense_Mutation p.S58A 0.15 tolerated(0.9) benign(0.006) TCGA-05-4397-01 9 119187757 119187757 C T ASTN2 3'UTR 0.33 TCGA-05-4397-01 9 119737521 119737521 C A ASTN2 Missense_Mutation p.D568Y 0.35 deleterious(0) unknown(0) TCGA-05-4397-01 9 121929385 121929385 G T BRINP1 Missense_Mutation p.Q755K 0.42 tolerated(0.21) benign(0.007) TCGA-05-4397-01 9 123201727 123201727 G A CDK5RAP2 Silent p.F1224F 0.05 TCGA-05-4397-01 9 124103597 124103597 G T STOM Silent p.L250L 0.36 TCGA-05-4397-01 9 125377019 125377019 G A OR1Q1 Translation_Start_Site p.M1? 0.40 deleterious(0.01) probably_damaging(0.914) TCGA-05-4397-01 9 125377246 125377246 C A OR1Q1 Missense_Mutation p.T77K 0.39 deleterious(0) benign(0.129) TCGA-05-4397-01 9 126132933 126132933 G T CRB2 Missense_Mutation p.R534L 0.44 deleterious(0.01) possibly_damaging(0.569) TCGA-05-4397-01 9 128347858 128347858 C A MAPKAP1 Missense_Mutation p.S216I 0.43 tolerated(0.12) benign(0.071) TCGA-05-4397-01 9 130676970 130676970 G C ST6GALNAC4 Missense_Mutation p.H55D 0.14 benign(0.09) TCGA-05-4397-01 9 131009749 131009749 A T DNM1 Missense_Mutation p.Y626F 0.30 tolerated(0.13) benign(0.034) TCGA-05-4397-01 9 138515896 138515896 G T GLT6D1 3'UTR 0.43 TCGA-05-4397-01 9 138515897 138515897 G T GLT6D1 3'UTR 0.43 TCGA-05-4397-01 9 138713293 138713293 G A CAMSAP1 Missense_Mutation p.P1072S 0.42 tolerated(1) benign(0.002) TCGA-05-4397-01 9 139368707 139368707 T C SEC16A Missense_Mutation p.S1121G 0.46 tolerated(0.05) benign(0.43) TCGA-05-4397-01 9 21187458 21187458 C A IFNA4 Missense_Mutation p.D25Y 0.38 tolerated(0.05) possibly_damaging(0.745) TCGA-05-4397-01 9 21201973 21201973 C G IFNA7 Missense_Mutation p.E64D 0.43 deleterious(0.05) benign(0.035) TCGA-05-4397-01 9 2717919 2717919 C T KCNV2 Silent p.D60D 0.36 TCGA-05-4397-01 9 35450184 35450184 C T ATP8B5P RNA 0.40 TCGA-05-4397-01 9 38396249 38396249 C G ALDH1B1 Missense_Mutation p.F168L 0.12 tolerated(0.14) probably_damaging(0.981) TCGA-05-4397-01 9 75366861 75366861 A G TMC1 Missense_Mutation p.M211V 0.43 tolerated(1) benign(0.023) TCGA-05-4397-01 9 75420388 75420388 T C TMC1 Missense_Mutation p.C553R 0.41 deleterious(0) possibly_damaging(0.565) TCGA-05-4397-01 9 79635143 79635143 T C FOXB2 Silent p.P191P 0.24 TCGA-05-4397-01 9 84607206 84607206 T A SPATA31D1 Missense_Mutation p.H607Q 0.42 deleterious(0.04) possibly_damaging(0.834) TCGA-05-4397-01 9 8521381 8521381 C G PTPRD Missense_Mutation p.R286T 0.41 deleterious(0.01) probably_damaging(0.995) TCGA-05-4397-01 9 93637067 93637067 G T SYK Nonsense_Mutation p.E373* 0.36 TCGA-05-4397-01 9 94903903 94903903 G C snoU13 3'Flank 0.29 TCGA-05-4397-01 9 95003138 95003138 C T IARS Missense_Mutation p.G1095S 0.36 tolerated(0.26) benign(0.004) TCGA-05-4397-01 9 990207 990207 C T DMRT3 Silent p.V207V 0.48 TCGA-05-4397-01 X 102337054 102337054 A T NXF3 Intron 0.44 TCGA-05-4397-01 X 107976561 107976561 G T IRS4 Missense_Mutation p.T1005K 0.46 deleterious(0.04) unknown(0) TCGA-05-4397-01 X 110544770 110544770 A G DCX 3'UTR 1.00 TCGA-05-4397-01 X 110951500 110951502 ACT - ALG13 In_Frame_Del p.Y211del 0.28 TCGA-05-4397-01 X 110996020 110996020 A T ALG13 Missense_Mutation p.T979S 0.86 tolerated(0.08) benign(0.098) TCGA-05-4397-01 X 117043468 117043468 C T KLHL13 Missense_Mutation p.G391R 0.47 deleterious(0.01) probably_damaging(0.997) TCGA-05-4397-01 X 128649712 128649712 C T SMARCA1 Silent p.L194L 0.90 TCGA-05-4397-01 X 130419770 130419770 G T IGSF1 Missense_Mutation p.P117H 0.39 deleterious(0.04) probably_damaging(0.979) TCGA-05-4397-01 X 133559234 133559234 A G PHF6 Silent p.L324L 0.94 TCGA-05-4397-01 X 134425434 134425434 C A ZNF75D Missense_Mutation p.W220C 0.88 tolerated(0.06) benign(0.133) TCGA-05-4397-01 X 135433701 135433701 G T GPR112 Splice_Site p.X2274_splice 0.41 TCGA-05-4397-01 X 142795501 142795502 CT A SPANXN2 Frame_Shift_Del p.K59Ifs*5 0.33 TCGA-05-4397-01 X 144906017 144906017 G T SLITRK2 Missense_Mutation p.V692L 0.90 tolerated(0.54) benign(0.004) TCGA-05-4397-01 X 146280622 146280622 C A MIR513B RNA 0.96 TCGA-05-4397-01 X 155232673 155232673 G T IL9R Missense_Mutation p.G44V 0.36 tolerated(0.1) benign(0.094) TCGA-05-4397-01 X 32867855 32867855 C T DMD Missense_Mutation p.G59E 0.98 possibly_damaging(0.865) TCGA-05-4397-01 X 34148385 34148385 G A FAM47A Nonsense_Mutation p.Q671* 0.88 TCGA-05-4397-01 X 34148601 34148601 G A FAM47A Missense_Mutation p.L599F 0.81 tolerated(0.24) probably_damaging(0.986) TCGA-05-4397-01 X 51150737 51150737 G T CXorf67 Missense_Mutation p.R290L 0.92 tolerated(0.36) benign(0) TCGA-05-4397-01 X 5827225 5827225 C A NLGN4X Missense_Mutation p.Q227H 0.88 deleterious(0) probably_damaging(0.995) TCGA-05-4397-01 X 70345900 70345900 C T MED12 Nonsense_Mutation p.Q813* 0.78 TCGA-05-4397-01 X 71791953 71791953 T C HDAC8 Missense_Mutation p.M40V 1.00 tolerated(0.29) benign(0.035) TCGA-05-4397-01 X 73047154 73047154 G T XIST RNA 0.87 TCGA-05-4397-01 X 73959987 73959987 G T KIAA2022 Silent p.R1469R 0.84 TCGA-05-4397-01 X 91134002 91134002 G T PCDH11X Missense_Mutation p.W921C 0.47 tolerated(0.1) probably_damaging(0.999) TCGA-05-4397-01 X 91873567 91873567 T A PCDH11X Silent p.P1224P 0.89 TCGA-05-4397-01 X 91873596 91873596 G T PCDH11X Missense_Mutation p.S1234I 0.89 deleterious_low_confidence(0.01) benign(0.079) TCGA-05-4397-01 X 92965007 92965007 G A FAM133A Missense_Mutation p.E197K 0.96 deleterious_low_confidence(0) unknown(0) TCGA-05-4398-01 10 104593791 104593791 A G CYP17A1 Splice_Site p.X251_splice 0.31 TCGA-05-4398-01 10 106970900 106970900 A C SORCS3 Missense_Mutation p.Y756S 0.41 deleterious(0) probably_damaging(0.999) TCGA-05-4398-01 10 106970934 106970934 C T SORCS3 Silent p.V767V 0.14 TCGA-05-4398-01 10 108431126 108431126 C T SORCS1 Splice_Site p.X687_splice 0.32 TCGA-05-4398-01 10 112764372 112764372 A G SHOC2 Silent p.L327L 0.16 TCGA-05-4398-01 10 12206397 12206397 G A SEC61A2 Missense_Mutation p.E459K 0.11 deleterious(0.02) possibly_damaging(0.783) TCGA-05-4398-01 10 134940764 134940764 C T GPR123 Silent p.P143P 0.37 TCGA-05-4398-01 10 135106116 135106116 T G TUBGCP2 Silent p.T395T 0.38 TCGA-05-4398-01 10 14870270 14870274 TACTG AACTTT CDNF Splice_Site p.X39_splice 0.09 TCGA-05-4398-01 10 17373458 17373458 T C ST8SIA6 Silent p.E157E 0.07 TCGA-05-4398-01 10 18331687 18331687 G T SLC39A12 Silent p.L667L 0.26 TCGA-05-4398-01 10 25861766 25861766 T G GPR158 Missense_Mutation p.L568R 0.11 deleterious(0) possibly_damaging(0.665) TCGA-05-4398-01 10 27700774 27700774 T A PTCHD3 Missense_Mutation p.I392F 0.18 tolerated(0.63) benign(0.001) TCGA-05-4398-01 10 44871437 44871437 T C CXCL12 3'Flank 0.11 TCGA-05-4398-01 10 44873158 44873158 C A CXCL12 3'UTR 0.16 TCGA-05-4398-01 10 50315879 50315879 C A VSTM4 Missense_Mutation p.A73S 0.16 tolerated(0.4) benign(0.257) TCGA-05-4398-01 10 50863202 50863202 C A CHAT Missense_Mutation p.R566S 0.12 deleterious(0) probably_damaging(0.999) TCGA-05-4398-01 10 51465342 51465342 G T AGAP7 Missense_Mutation p.P372T 0.06 deleterious(0.01) possibly_damaging(0.9) TCGA-05-4398-01 10 51584632 51584632 G T NCOA4 Missense_Mutation p.C260F 0.16 tolerated(0.08) benign(0.056) TCGA-05-4398-01 10 54074333 54074333 C A DKK1 Missense_Mutation p.P47T 0.16 deleterious_low_confidence(0.01) benign(0.133) TCGA-05-4398-01 10 55839091 55839091 C A PCDH15 Silent p.G697G 0.13 TCGA-05-4398-01 10 60577385 60577385 G T BICC1 Missense_Mutation p.G866V 0.43 tolerated(0.05) probably_damaging(1) TCGA-05-4398-01 10 61844360 61844360 C A ANK3 Missense_Mutation p.E1358D 0.22 probably_damaging(0.992) TCGA-05-4398-01 10 71683578 71683578 C A COL13A1 Silent p.G406G 0.29 TCGA-05-4398-01 10 73050706 73050706 G T UNC5B Silent p.A378A 0.13 TCGA-05-4398-01 10 73330613 73330613 G T CDH23 Missense_Mutation p.D231Y 0.13 deleterious(0) possibly_damaging(0.862) TCGA-05-4398-01 10 75842254 75842254 A G VCL Missense_Mutation p.K276E 0.07 deleterious(0.02) possibly_damaging(0.676) TCGA-05-4398-01 10 81053264 81053264 G T ZMIZ1 Missense_Mutation p.G362C 0.19 probably_damaging(1) TCGA-05-4398-01 10 84738815 84738815 C T NRG3 Missense_Mutation p.P508S 0.44 deleterious(0.05) probably_damaging(0.948) TCGA-05-4398-01 10 91522499 91522499 A T KIF20B Silent p.P1592P 0.12 TCGA-05-4398-01 10 95791988 95791988 G T PLCE1 Silent p.L395L 0.26 TCGA-05-4398-01 10 98388154 98388154 C A PIK3AP1 Splice_Site p.X491_splice 0.22 TCGA-05-4398-01 10 98469379 98469379 G A PIK3AP1 Silent p.T125T 0.26 TCGA-05-4398-01 11 100141943 100141943 C G CNTN5 Missense_Mutation p.P762A 0.26 tolerated(0.07) probably_damaging(0.998) TCGA-05-4398-01 11 109294562 109294562 T C C11orf87 Missense_Mutation p.V68A 0.11 deleterious(0.02) probably_damaging(0.987) TCGA-05-4398-01 11 111420459 111420459 G A LAYN Missense_Mutation p.R175Q 0.12 deleterious(0.03) possibly_damaging(0.499) TCGA-05-4398-01 11 111420460 111420460 G T LAYN Silent p.R175R 0.12 TCGA-05-4398-01 11 111680426 111680426 A G ALG9 Silent p.Y387Y 0.19 TCGA-05-4398-01 11 113295192 113295192 C T DRD2 Missense_Mutation p.R61H 0.15 deleterious(0) probably_damaging(0.994) TCGA-05-4398-01 11 118983090 118983090 A T C2CD2L Missense_Mutation p.S358C 0.07 tolerated(0.05) benign(0.428) TCGA-05-4398-01 11 119998088 119998088 G T TRIM29 Silent p.R364R 0.24 TCGA-05-4398-01 11 120201131 120201131 A C TMEM136 Silent p.A237A 0.14 TCGA-05-4398-01 11 121477578 121477578 A T SORL1 Missense_Mutation p.Q1658L 0.09 tolerated(0.08) probably_damaging(0.999) TCGA-05-4398-01 11 123813850 123813850 A T OR6T1 Silent p.A232A 0.14 TCGA-05-4398-01 11 123894150 123894150 C A OR10G9 Missense_Mutation p.A144D 0.14 deleterious(0) probably_damaging(0.93) TCGA-05-4398-01 11 124765005 124765005 T C ROBO4 Missense_Mutation p.N374S 0.05 tolerated(0.75) benign(0.115) TCGA-05-4398-01 11 125325977 125325977 C A FEZ1 Missense_Mutation p.E231D 0.13 deleterious(0.02) possibly_damaging(0.519) TCGA-05-4398-01 11 12883843 12883843 G C TEAD1 Missense_Mutation p.K83N 0.42 deleterious(0) probably_damaging(0.962) TCGA-05-4398-01 11 131240574 131240574 G T NTM 5'UTR 0.44 TCGA-05-4398-01 11 132180009 132180009 C T NTM Missense_Mutation p.P222L 0.21 deleterious(0) probably_damaging(0.962) TCGA-05-4398-01 11 21592478 21592478 C A NELL1 Silent p.R717R 0.25 TCGA-05-4398-01 11 30033354 30033354 T - KCNA4 Frame_Shift_Del p.K291Sfs*19 0.11 TCGA-05-4398-01 11 34218874 34218874 T C ABTB2 Silent p.E414E 0.20 TCGA-05-4398-01 11 40136679 40136679 A G LRRC4C Silent p.T388T 0.25 TCGA-05-4398-01 11 4132861 4132861 A C RRM1 Missense_Mutation p.N160H 0.21 deleterious_low_confidence(0.04) benign(0.099) TCGA-05-4398-01 11 44640631 44640631 C A CD82 Nonsense_Mutation p.C253* 0.07 TCGA-05-4398-01 11 4511052 4511052 C A OR52K1 Missense_Mutation p.L308I 0.39 tolerated(0.3) benign(0.002) TCGA-05-4398-01 11 48185982 48185982 A G PTPRJ Missense_Mutation p.Y1257C 0.20 tolerated(0.16) probably_damaging(0.996) TCGA-05-4398-01 11 48511074 48511074 G T OR4A47 Missense_Mutation p.V244L 0.23 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-05-4398-01 11 5345399 5345399 G T OR51B2 Silent p.L43L 0.18 TCGA-05-4398-01 11 55065689 55065689 C A TRIM51HP RNA 0.44 TCGA-05-4398-01 11 55135624 55135624 T A OR4A15 Missense_Mutation p.F89I 0.11 deleterious_low_confidence(0.01) benign(0.286) TCGA-05-4398-01 11 5530285 5530285 C A UBQLN3 Silent p.V168V 0.30 TCGA-05-4398-01 11 55322128 55322128 T G OR4C15 Missense_Mutation p.L116V 0.08 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-05-4398-01 11 55653101 55653101 C A TRIM51 Missense_Mutation p.T66N 0.24 deleterious(0) possibly_damaging(0.781) TCGA-05-4398-01 11 55889871 55889871 C A OR8H3 Missense_Mutation p.T8K 0.09 deleterious(0) probably_damaging(0.931) TCGA-05-4398-01 11 56058272 56058272 G T OR8H1 Missense_Mutation p.N89K 0.17 tolerated(1) benign(0.005) TCGA-05-4398-01 11 56230358 56230358 G T OR5M9 Missense_Mutation p.H174N 0.37 deleterious(0) probably_damaging(0.997) TCGA-05-4398-01 11 56310500 56310500 G T OR5M11 Silent p.T78T 0.17 TCGA-05-4398-01 11 57193057 57193057 T C SLC43A3 Missense_Mutation p.I91V 0.09 tolerated(0.21) benign(0.03) TCGA-05-4398-01 11 5758106 5758106 G T OR56B1 Missense_Mutation p.E120D 0.22 deleterious(0) probably_damaging(0.999) TCGA-05-4398-01 11 57958655 57958655 T C OR9Q2 Silent p.A231A 0.08 TCGA-05-4398-01 11 58170853 58170853 G A OR5B3 Silent p.F10F 0.12 TCGA-05-4398-01 11 58715346 58715346 T C GLYATL1 Missense_Mutation p.Y63H 0.27 deleterious(0) probably_damaging(0.922) TCGA-05-4398-01 11 59271426 59271426 C T OR4D11 Silent p.I126I 0.20 TCGA-05-4398-01 11 59807826 59807826 C AG OOSP2 5'UTR 0.17 TCGA-05-4398-01 11 60152572 60152572 C A MS4A7 Silent p.I53I 0.21 TCGA-05-4398-01 11 61110055 61110055 G T DAK Missense_Mutation p.A234S 0.13 tolerated(0.07) possibly_damaging(0.712) TCGA-05-4398-01 11 64665575 64665575 C A ATG2A Missense_Mutation p.G1614V 0.09 tolerated(0.38) benign(0) TCGA-05-4398-01 11 64940262 64940262 C A SPDYC Silent p.G208G 0.32 TCGA-05-4398-01 11 65303778 65303778 G C SCYL1 Missense_Mutation p.E542Q 0.09 deleterious(0.02) benign(0.217) TCGA-05-4398-01 11 65304157 65304157 G C SCYL1 Silent p.L584L 0.06 TCGA-05-4398-01 11 66191476 66191476 G T NPAS4 Missense_Mutation p.S372I 0.18 deleterious(0.02) benign(0.241) TCGA-05-4398-01 11 66276615 66276615 C T DPP3 Missense_Mutation p.R703C 0.13 deleterious(0) probably_damaging(1) TCGA-05-4398-01 11 67161065 67161065 G T RAD9A Missense_Mutation p.Q111H 0.36 deleterious(0.01) probably_damaging(0.993) TCGA-05-4398-01 11 7063623 7063623 T C NLRP14 Silent p.D122D 0.44 TCGA-05-4398-01 11 72291955 72291955 G C PDE2A Missense_Mutation p.T703R 0.16 deleterious(0) probably_damaging(1) TCGA-05-4398-01 11 72295737 72295737 G A PDE2A Silent p.I465I 0.06 TCGA-05-4398-01 11 74913994 74913994 G T SLCO2B1 Missense_Mutation p.M604I 0.15 deleterious(0.01) possibly_damaging(0.699) TCGA-05-4398-01 11 89424270 89424270 C T FOLH1B RNA 0.14 TCGA-05-4398-01 11 89896172 89896172 G T NAALAD2 Missense_Mutation p.V349F 0.08 tolerated(0.09) benign(0.218) TCGA-05-4398-01 11 92714849 92714849 C T MTNR1B Missense_Mutation p.R154C 0.22 tolerated(0.18) benign(0.009) TCGA-05-4398-01 11 99715985 99715985 C T CNTN5 Nonsense_Mutation p.Q190* 0.12 TCGA-05-4398-01 12 100676756 100676756 C A SCYL2 Missense_Mutation p.S3Y 0.09 tolerated_low_confidence(0.15) benign(0.031) TCGA-05-4398-01 12 101437376 101437376 C A ANO4 Missense_Mutation p.P370Q 0.19 tolerated(0.14) benign(0.283) TCGA-05-4398-01 12 101581208 101581208 C A SLC5A8 Missense_Mutation p.D307Y 0.46 deleterious(0) possibly_damaging(0.81) TCGA-05-4398-01 12 101584289 101584289 C G SLC5A8 Missense_Mutation p.V264L 0.10 deleterious(0.02) probably_damaging(0.98) TCGA-05-4398-01 12 104125389 104125389 C T STAB2 Silent p.Y1753Y 0.33 TCGA-05-4398-01 12 109332670 109332671 - T SVOP Frame_Shift_Ins p.T212Nfs*8 0.20 TCGA-05-4398-01 12 11091741 11091741 T A TAS2R14 Missense_Mutation p.L22F 0.12 tolerated(0.12) possibly_damaging(0.461) TCGA-05-4398-01 12 111088015 111088015 C T HVCN1 Silent p.L238L 0.47 TCGA-05-4398-01 12 116420924 116420924 C A MED13L Missense_Mutation p.E1651D 0.56 deleterious(0.04) benign(0.101) TCGA-05-4398-01 12 122669147 122669147 G A LRRC43 Missense_Mutation p.E78K 0.14 deleterious(0) probably_damaging(0.939) TCGA-05-4398-01 12 125618604 125618604 C T AACS Silent p.V535V 0.18 TCGA-05-4398-01 12 129822241 129822241 A T TMEM132D Missense_Mutation p.L413M 0.08 tolerated(0.08) benign(0.01) TCGA-05-4398-01 12 130185164 130185164 G A TMEM132D Silent p.I53I 0.16 TCGA-05-4398-01 12 21015459 21015459 T G SLCO1B3 Missense_Mutation p.F199V 0.31 deleterious(0) probably_damaging(0.998) TCGA-05-4398-01 12 2566788 2566788 G A CACNA1C Missense_Mutation p.G225R 0.04 deleterious(0) benign(0.345) TCGA-05-4398-01 12 29648297 29648297 A T OVCH1 Silent p.I125I 0.61 TCGA-05-4398-01 12 29709830 29709830 G T TMTC1 Missense_Mutation p.Q546K 0.26 deleterious(0.05) benign(0.008) TCGA-05-4398-01 12 34175307 34175307 G C ALG10 5'UTR 0.33 TCGA-05-4398-01 12 40158324 40158324 C A SLC2A13 Missense_Mutation p.W553L 0.25 deleterious(0) probably_damaging(0.999) TCGA-05-4398-01 12 40651089 40651089 T C LRRK2 Missense_Mutation p.L443P 0.06 deleterious(0) benign(0.398) TCGA-05-4398-01 12 41967276 41967276 C G PDZRN4 Missense_Mutation p.R899G 0.17 deleterious(0) probably_damaging(0.998) TCGA-05-4398-01 12 44605102 44605102 C A TMEM117 Silent p.P180P 0.20 TCGA-05-4398-01 12 47629393 47629393 C A PCED1B Silent p.R183R 0.43 TCGA-05-4398-01 12 51500371 51500371 T A TFCP2 Missense_Mutation p.Y285F 0.17 tolerated(0.22) benign(0.013) TCGA-05-4398-01 12 52985302 52985302 G A KRT72 Silent p.Y303Y 0.09 TCGA-05-4398-01 12 54744395 54744395 C G COPZ1 3'UTR 0.19 TCGA-05-4398-01 12 5603588 5603588 C A NTF3 Silent p.R83R 0.12 TCGA-05-4398-01 12 57572789 57572789 A T LRP1 Missense_Mutation p.N1575Y 0.48 benign(0.188) TCGA-05-4398-01 12 58089584 58089584 G A OS9 Missense_Mutation p.E121K 0.21 deleterious(0) probably_damaging(0.924) TCGA-05-4398-01 12 6167018 6167018 T G VWF Missense_Mutation p.M576L 0.12 tolerated(0.45) benign(0) TCGA-05-4398-01 12 64456851 64456851 T C SRGAP1 Missense_Mutation p.M319T 0.50 deleterious(0) possibly_damaging(0.722) TCGA-05-4398-01 12 6861144 6861144 T A MLF2 Missense_Mutation p.I43F 0.08 deleterious(0) possibly_damaging(0.713) TCGA-05-4398-01 12 6939836 6939836 G T LEPREL2 Missense_Mutation p.R295L 0.25 deleterious(0.03) benign(0.362) TCGA-05-4398-01 12 70049505 70049505 G A BEST3 Missense_Mutation p.R397W 0.52 deleterious(0) probably_damaging(0.998) TCGA-05-4398-01 12 7586276 7586276 C G CD163L1 Missense_Mutation p.E47Q 0.14 tolerated(0.23) benign(0.109) TCGA-05-4398-01 12 7654058 7654058 C A CD163 Missense_Mutation p.G45V 0.12 deleterious(0) possibly_damaging(0.801) TCGA-05-4398-01 12 7654059 7654059 C A CD163 Splice_Site p.X45_splice 0.11 TCGA-05-4398-01 12 78400636 78400636 C - NAV3 Frame_Shift_Del p.V442Cfs*50 0.30 TCGA-05-4398-01 12 78531021 78531021 C - NAV3 Frame_Shift_Del p.P1503Qfs*97 0.22 TCGA-05-4398-01 12 8048236 8048236 C A NANOGP1 RNA 0.13 TCGA-05-4398-01 12 8289466 8289466 G T CLEC4A Missense_Mutation p.W178L 0.18 deleterious(0) probably_damaging(0.976) TCGA-05-4398-01 12 8813495 8813495 C A MFAP5 Splice_Site p.X20_splice 0.20 TCGA-05-4398-01 13 110831280 110831280 C A COL4A1 Silent p.P816P 0.27 TCGA-05-4398-01 13 111082234 111082234 G T COL4A2 Silent p.G160G 0.33 TCGA-05-4398-01 13 113803629 113803629 C T F10 Missense_Mutation p.P422L 0.31 deleterious(0) probably_damaging(1) TCGA-05-4398-01 13 25840328 25840328 T C MTMR6 Missense_Mutation p.Y134C 0.39 deleterious(0) probably_damaging(0.985) TCGA-05-4398-01 13 26535737 26535737 C T ATP8A2 Missense_Mutation p.H1070Y 0.23 tolerated(0.51) benign(0.002) TCGA-05-4398-01 13 32836597 32836597 T A FRY Silent p.I2588I 0.24 TCGA-05-4398-01 13 51854668 51854668 C T FAM124A Missense_Mutation p.P342L 0.11 deleterious(0.04) benign(0.048) TCGA-05-4398-01 13 58207106 58207106 G T PCDH17 Silent p.S142S 0.41 TCGA-05-4398-01 13 74289627 74289627 C T KLF12 Missense_Mutation p.R302H 0.16 deleterious(0.03) possibly_damaging(0.534) TCGA-05-4398-01 14 105420104 105420104 T C AHNAK2 Missense_Mutation p.R562G 0.08 benign(0.017) TCGA-05-4398-01 14 105420649 105420649 C G AHNAK2 Missense_Mutation p.R380T 0.06 benign(0.434) TCGA-05-4398-01 14 107178872 107178872 G T IGHV2-70 Missense_Mutation p.T102K 0.24 tolerated(1) benign(0.003) TCGA-05-4398-01 14 20389623 20389623 T G OR4K5 Missense_Mutation p.I286M 0.07 deleterious(0.01) probably_damaging(0.91) TCGA-05-4398-01 14 21058517 21058517 G C RNASE12 Missense_Mutation p.H122Q 0.06 tolerated(0.41) benign(0.009) TCGA-05-4398-01 14 24040242 24040242 G T JPH4 Silent p.P566P 0.18 TCGA-05-4398-01 14 24738353 24738353 C G RABGGTA Missense_Mutation p.Q216H 0.16 deleterious(0.02) benign(0.331) TCGA-05-4398-01 14 26917440 26917440 T C NOVA1 Missense_Mutation p.T417A 0.07 tolerated(0.97) benign(0.078) TCGA-05-4398-01 14 44975130 44975130 G A FSCB Missense_Mutation p.S354L 0.07 tolerated(0.65) benign(0.019) TCGA-05-4398-01 14 52186887 52186887 G T FRMD6 Missense_Mutation p.R380L 0.40 tolerated(0.12) possibly_damaging(0.796) TCGA-05-4398-01 14 70633906 70633906 C A SLC8A3 Missense_Mutation p.G412W 0.15 deleterious(0) probably_damaging(1) TCGA-05-4398-01 14 71524403 71524403 G C PCNX Missense_Mutation p.G1605A 0.12 deleterious(0) probably_damaging(0.999) TCGA-05-4398-01 14 74206175 74206175 C A ELMSAN1 Silent p.V179V 0.15 TCGA-05-4398-01 14 81227931 81227931 C G CEP128 Missense_Mutation p.E801D 0.28 tolerated(0.53) benign(0.014) TCGA-05-4398-01 14 93118589 93118589 G T RIN3 Missense_Mutation p.D399Y 0.10 deleterious(0) probably_damaging(0.948) TCGA-05-4398-01 15 28359782 28359782 T C HERC2 Missense_Mutation p.Y4630C 0.35 probably_damaging(1) TCGA-05-4398-01 15 31324994 31324994 C A TRPM1 Silent p.R967R 0.37 TCGA-05-4398-01 15 35168171 35168171 G T AQR Missense_Mutation p.L1068M 0.15 deleterious(0) probably_damaging(0.995) TCGA-05-4398-01 15 42042588 42042588 A G MGA Silent p.A2261A 0.18 TCGA-05-4398-01 15 44581416 44581416 G A CASC4 Silent p.L63L 0.16 TCGA-05-4398-01 15 45491056 45491056 C T SHF Missense_Mutation p.G73R 0.29 tolerated_low_confidence(0.06) benign(0) TCGA-05-4398-01 15 52646197 52646197 C T MYO5A Silent p.K1146K 0.15 TCGA-05-4398-01 15 58430752 58430752 G C AQP9 5'UTR 0.56 TCGA-05-4398-01 15 59323058 59323058 A G RNF111 Missense_Mutation p.T13A 0.07 deleterious_low_confidence(0) benign(0.007) TCGA-05-4398-01 15 65559014 65559014 G A PARP16 Silent p.N135N 0.30 TCGA-05-4398-01 15 65681620 65681620 A G IGDCC4 Splice_Site p.X846_splice 0.22 TCGA-05-4398-01 15 71124814 71124814 C T LARP6 Silent p.A351A 0.20 TCGA-05-4398-01 15 75968002 75968002 G T CSPG4 Silent p.L2286L 0.14 TCGA-05-4398-01 15 75968734 75968734 A T CSPG4 Silent p.T2042T 0.09 TCGA-05-4398-01 15 79748634 79748634 G C KIAA1024 Missense_Mutation p.V49L 0.12 tolerated(1) benign(0.002) TCGA-05-4398-01 15 89399982 89399982 A T ACAN Missense_Mutation p.E1389V 0.12 tolerated(0.54) possibly_damaging(0.877) TCGA-05-4398-01 15 89736526 89736526 C G ABHD2 Missense_Mutation p.L353V 0.16 deleterious(0.02) probably_damaging(0.95) TCGA-05-4398-01 15 90349374 90349374 G T ANPEP Silent p.P147P 0.23 TCGA-05-4398-01 16 1245923 1245923 C A CACNA1H Intron 0.10 TCGA-05-4398-01 16 1308351 1308351 C T TPSD1 Silent p.L235L 0.14 TCGA-05-4398-01 16 14355355 14355355 A G MKL2 3'UTR 0.25 TCGA-05-4398-01 16 15165037 15165037 C A RRN3 Missense_Mutation p.R400S 0.10 deleterious(0) benign(0.067) TCGA-05-4398-01 16 1826131 1826131 G T EME2 Silent p.P344P 0.20 TCGA-05-4398-01 16 19070736 19070736 A T TMC7 Splice_Site p.X676_splice 0.19 TCGA-05-4398-01 16 20043477 20043477 G T GPR139 Missense_Mutation p.S214R 0.12 tolerated(0.5) possibly_damaging(0.583) TCGA-05-4398-01 16 21053462 21053462 G C DNAH3 Missense_Mutation p.L1509V 0.36 tolerated(0.23) benign(0.034) TCGA-05-4398-01 16 23695312 23695312 G A PLK1 Missense_Mutation p.R313H 0.09 deleterious(0.04) benign(0.013) TCGA-05-4398-01 16 24196453 24196453 G - PRKCB Frame_Shift_Del p.K520Sfs*39 0.10 TCGA-05-4398-01 16 28498850 28498850 G A CLN3 Silent p.L129L 0.26 TCGA-05-4398-01 16 28513325 28513325 C T IL27 Missense_Mutation p.R145H 0.07 deleterious(0.03) benign(0.027) TCGA-05-4398-01 16 3025738 3025738 C A PKMYT1 Missense_Mutation p.A152S 0.21 tolerated(0.74) benign(0.014) TCGA-05-4398-01 16 30392730 30392730 G C SEPT1 Missense_Mutation p.L129V 0.14 benign(0.007) TCGA-05-4398-01 16 30544384 30544384 C G ZNF747 Missense_Mutation p.G191A 0.11 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-05-4398-01 16 30794693 30794693 C T ZNF629 Missense_Mutation p.R319H 0.22 tolerated(0.06) probably_damaging(1) TCGA-05-4398-01 16 31371127 31371127 C A ITGAX Missense_Mutation p.S179R 0.17 tolerated(0.38) benign(0.007) TCGA-05-4398-01 16 31374572 31374572 G T ITGAX Silent p.G529G 0.23 TCGA-05-4398-01 16 31408979 31408979 C T ITGAD Missense_Mutation p.R102W 0.15 tolerated(0.34) benign(0) TCGA-05-4398-01 16 31422758 31422758 C A ITGAD Missense_Mutation p.P543T 0.17 deleterious(0) probably_damaging(0.971) TCGA-05-4398-01 16 33647258 33647258 G T RP11-812E19.9 Nonsense_Mutation p.Y114* 0.08 TCGA-05-4398-01 16 50744652 50744652 G T NOD2 Missense_Mutation p.G277V 0.31 deleterious(0) possibly_damaging(0.774) TCGA-05-4398-01 16 50811793 50811793 G T CYLD Missense_Mutation p.G360V 0.07 deleterious(0.03) possibly_damaging(0.806) TCGA-05-4398-01 16 51174165 51174165 G T SALL1 Silent p.T656T 0.12 TCGA-05-4398-01 16 51174492 51174492 G T SALL1 Silent p.V547V 0.28 TCGA-05-4398-01 16 55536706 55536706 G T MMP2 Missense_Mutation p.K595N 0.09 tolerated(0.1) benign(0.391) TCGA-05-4398-01 16 56906304 56906304 C A SLC12A3 Silent p.A298A 0.09 TCGA-05-4398-01 16 71061506 71061506 C A HYDIN Missense_Mutation p.R1014M 0.11 probably_damaging(0.983) TCGA-05-4398-01 16 80584462 80584462 G C DYNLRB2 3'UTR 0.18 TCGA-05-4398-01 16 814999 814999 A T MSLN Missense_Mutation p.E158V 0.30 deleterious(0.01) benign(0.354) TCGA-05-4398-01 16 81960704 81960704 G T PLCG2 Missense_Mutation p.G812V 0.15 deleterious(0) probably_damaging(1) TCGA-05-4398-01 16 8889820 8889820 T A TMEM186 Missense_Mutation p.M211L 0.37 deleterious_low_confidence(0.05) benign(0.001) TCGA-05-4398-01 17 10309716 10309716 T A MYH8 Splice_Site p.X724_splice 0.23 TCGA-05-4398-01 17 10360870 10360870 G T MYH4 Silent p.T588T 0.07 TCGA-05-4398-01 17 10399727 10399727 T A MYH1 Missense_Mutation p.E1599V 0.10 deleterious(0) probably_damaging(0.919) TCGA-05-4398-01 17 10424587 10424587 C G MYH2 3'UTR 0.18 TCGA-05-4398-01 17 10440587 10440587 T A MYH2 Silent p.L620L 0.24 TCGA-05-4398-01 17 10555781 10555781 C T MYH3 Missense_Mutation p.V102M 0.29 deleterious(0.01) possibly_damaging(0.767) TCGA-05-4398-01 17 11522936 11522936 G T DNAH9 Silent p.V396V 0.07 TCGA-05-4398-01 17 11522937 11522937 G T DNAH9 Missense_Mutation p.V397F 0.07 possibly_damaging(0.516) TCGA-05-4398-01 17 11532817 11532817 G T DNAH9 Missense_Mutation p.Q478H 0.22 benign(0.021) TCGA-05-4398-01 17 11651011 11651011 C A DNAH9 Missense_Mutation p.L2180I 0.37 possibly_damaging(0.458) TCGA-05-4398-01 17 12642536 12642536 C T MYOCD Missense_Mutation p.S203L 0.16 deleterious(0.05) possibly_damaging(0.53) TCGA-05-4398-01 17 13503879 13503879 G C HS3ST3A1 Missense_Mutation p.R190G 0.33 deleterious(0) probably_damaging(0.93) TCGA-05-4398-01 17 15881310 15881310 C T ZSWIM7 3'UTR 0.10 TCGA-05-4398-01 17 21826180 21826180 G T FAM27L RNA 0.10 TCGA-05-4398-01 17 21826202 21826202 G T FAM27L RNA 0.19 TCGA-05-4398-01 17 27401235 27401235 G A TIAF1 5'UTR 0.21 TCGA-05-4398-01 17 27493336 27493336 G A MYO18A Missense_Mutation p.P208L 0.14 deleterious(0) possibly_damaging(0.842) TCGA-05-4398-01 17 28656342 28656342 G C TMIGD1 Missense_Mutation p.D96E 0.14 deleterious(0) probably_damaging(1) TCGA-05-4398-01 17 3195613 3195613 G T OR3A1 Silent p.L88L 0.23 TCGA-05-4398-01 17 32964723 32964723 C A TMEM132E Nonsense_Mutation p.C809* 0.16 TCGA-05-4398-01 17 33520879 33520879 C A SLC35G3 Nonsense_Mutation p.E150* 0.23 TCGA-05-4398-01 17 3386869 3386869 T C ASPA Missense_Mutation p.I170T 0.21 deleterious(0) benign(0.407) TCGA-05-4398-01 17 37903227 37903227 G T GRB7 3'UTR 0.38 TCGA-05-4398-01 17 38252783 38252783 C - NR1D1 Frame_Shift_Del p.E173Rfs*52 0.20 TCGA-05-4398-01 17 38910148 38910148 A T KRT25 Missense_Mutation p.S211R 0.20 tolerated(0.12) possibly_damaging(0.827) TCGA-05-4398-01 17 39118699 39118699 G T KRT39 Silent p.I275I 0.21 TCGA-05-4398-01 17 39334263 39334263 G T KRTAP4-2 Missense_Mutation p.Q52K 0.22 tolerated(0.2) probably_damaging(0.991) TCGA-05-4398-01 17 40959840 40959840 T A CNTD1 Silent p.I260I 0.18 TCGA-05-4398-01 17 42477130 42477130 C A GPATCH8 Missense_Mutation p.G772V 0.08 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-05-4398-01 17 46673903 46673903 G - HOXB6 Frame_Shift_Del p.L183Cfs*3 0.23 TCGA-05-4398-01 17 47376242 47376242 T A ZNF652 Missense_Mutation p.S452C 0.18 deleterious(0.02) possibly_damaging(0.828) TCGA-05-4398-01 17 48649379 48649379 C T CACNA1G Silent p.L243L 0.06 TCGA-05-4398-01 17 51900791 51900791 G A KIF2B Missense_Mutation p.V133M 0.10 tolerated(0.16) benign(0.043) TCGA-05-4398-01 17 51902231 51902231 G T KIF2B Missense_Mutation p.G613W 0.07 tolerated(0.19) benign(0) TCGA-05-4398-01 17 55709162 55709162 G T MSI2 Intron 0.17 TCGA-05-4398-01 17 56290356 56290356 C G MKS1 Missense_Mutation p.R282P 0.36 deleterious(0.02) possibly_damaging(0.663) TCGA-05-4398-01 17 57728627 57728627 G A CLTC Missense_Mutation p.D249N 0.14 deleterious(0.04) possibly_damaging(0.906) TCGA-05-4398-01 17 65340847 65340847 G T PSMD12 Missense_Mutation p.L320I 0.19 tolerated(0.63) benign(0.284) TCGA-05-4398-01 17 66873755 66873755 G A ABCA8 Silent p.N1328N 0.07 TCGA-05-4398-01 17 67111003 67111003 C A ABCA6 Missense_Mutation p.C561F 0.11 deleterious(0) probably_damaging(1) TCGA-05-4398-01 17 72348399 72348399 G T KIF19 Nonsense_Mutation p.E634* 0.44 TCGA-05-4398-01 17 72920736 72920736 G C OTOP2 Missense_Mutation p.E3D 0.15 tolerated_low_confidence(0.16) benign(0.195) TCGA-05-4398-01 17 7330141 7330141 C A C17orf74 Silent p.A277A 0.21 TCGA-05-4398-01 17 73503731 73503731 C A CASKIN2 Missense_Mutation p.G60C 0.32 deleterious(0) probably_damaging(0.999) TCGA-05-4398-01 17 74382929 74382929 G A SPHK1 Silent p.T225T 0.06 TCGA-05-4398-01 17 74473340 74473340 G A RHBDF2 Missense_Mutation p.P310L 0.16 deleterious(0) probably_damaging(1) TCGA-05-4398-01 17 7579373 7579373 C T TP53 Missense_Mutation p.G105D 0.32 deleterious(0) probably_damaging(1) TCGA-05-4398-01 17 77705138 77705138 C A ENPP7 Missense_Mutation p.H79Q 0.12 deleterious(0) probably_damaging(0.997) TCGA-05-4398-01 17 79163449 79163449 T A AZI1 3'UTR 0.27 TCGA-05-4398-01 17 8415964 8415964 C G MYH10 Missense_Mutation p.E919D 0.14 possibly_damaging(0.822) TCGA-05-4398-01 18 13885377 13885377 C T MC2R Silent p.L47L 0.21 TCGA-05-4398-01 18 14537826 14537826 C A POTEC Missense_Mutation p.G262C 0.11 deleterious(0) probably_damaging(0.993) TCGA-05-4398-01 18 14799120 14799120 C A ANKRD30B Missense_Mutation p.L684I 0.16 tolerated(0.33) benign(0) TCGA-05-4398-01 18 21513790 21513790 T G LAMA3 Missense_Mutation p.L2918R 0.22 benign(0) TCGA-05-4398-01 18 29709131 29709131 C G RNF138 Missense_Mutation p.S240C 0.12 deleterious(0) probably_damaging(0.956) TCGA-05-4398-01 18 31324221 31324221 C A ASXL3 Missense_Mutation p.P1470Q 0.25 probably_damaging(1) TCGA-05-4398-01 18 33706788 33706788 G A SLC39A6 Silent p.F61F 0.28 TCGA-05-4398-01 18 42618459 42618459 G T SETBP1 Missense_Mutation p.S1337I 0.18 deleterious(0) probably_damaging(0.913) TCGA-05-4398-01 18 43314340 43314340 T C SLC14A1 Missense_Mutation p.L204P 0.30 tolerated(0.07) benign(0.114) TCGA-05-4398-01 18 61264336 61264336 G T SERPINB13 Missense_Mutation p.M305I 0.13 tolerated(0.1) benign(0.002) TCGA-05-4398-01 18 61323236 61323236 T A SERPINB3 Missense_Mutation p.R276S 0.54 tolerated(0.48) benign(0.01) TCGA-05-4398-01 18 61390485 61390485 C G SERPINB11 Missense_Mutation p.T344R 0.53 deleterious(0) probably_damaging(0.999) TCGA-05-4398-01 18 61570585 61570585 G A SERPINB2 3'UTR 0.24 TCGA-05-4398-01 18 64178899 64178899 C A CDH19 Silent p.V494V 0.22 TCGA-05-4398-01 18 67718785 67718785 C A RTTN Splice_Site p.X1729_splice 0.60 TCGA-05-4398-01 18 70451078 70451078 C A NETO1 Missense_Mutation p.A235S 0.47 tolerated(0.12) benign(0.134) TCGA-05-4398-01 18 72353080 72353080 T C ZNF407 Splice_Site p.X1601_splice 0.29 TCGA-05-4398-01 18 77221367 77221367 G T NFATC1 Splice_Site p.X640_splice 0.22 TCGA-05-4398-01 19 12923894 12923894 C T RNASEH2A Intron 0.21 TCGA-05-4398-01 19 13883024 13883024 G T MRI1 Nonsense_Mutation p.E347* 0.28 TCGA-05-4398-01 19 14024011 14024011 G T CC2D1A Nonsense_Mutation p.E137* 0.39 TCGA-05-4398-01 19 14740861 14740861 A T EMR3 Missense_Mutation p.L601H 0.50 deleterious(0) probably_damaging(0.985) TCGA-05-4398-01 19 14829857 14829857 A T ZNF333 Missense_Mutation p.E573V 0.19 deleterious(0.05) possibly_damaging(0.728) TCGA-05-4398-01 19 15082552 15082552 T A SLC1A6 Missense_Mutation p.T114S 0.43 tolerated(0.59) benign(0.29) TCGA-05-4398-01 19 19655881 19655881 G A CILP2 Missense_Mutation p.G843R 0.54 deleterious(0.04) benign(0.02) TCGA-05-4398-01 19 19990929 19990929 G T ZNF253 Missense_Mutation p.R67I 0.19 tolerated(0.09) possibly_damaging(0.68) TCGA-05-4398-01 19 21909902 21909902 T C ZNF100 Silent p.E404E 0.09 TCGA-05-4398-01 19 22272135 22272135 C T ZNF257 Missense_Mutation p.S528L 0.14 deleterious(0.01) benign(0.38) TCGA-05-4398-01 19 30935936 30935936 G T ZNF536 Silent p.L489L 0.18 TCGA-05-4398-01 19 31768572 31768572 G T TSHZ3 Silent p.I709I 0.11 TCGA-05-4398-01 19 31770202 31770202 T C TSHZ3 Missense_Mutation p.D166G 0.20 deleterious(0) probably_damaging(0.998) TCGA-05-4398-01 19 35828663 35828663 C A CD22 Missense_Mutation p.P242T 0.34 deleterious(0) probably_damaging(1) TCGA-05-4398-01 19 36018397 36018397 C G SBSN Missense_Mutation p.G263R 0.46 deleterious(0) probably_damaging(0.991) TCGA-05-4398-01 19 3735930 3735930 G A TJP3 Missense_Mutation p.R384H 0.11 tolerated(0.16) benign(0.005) TCGA-05-4398-01 19 38126484 38126484 G A ZFP30 Missense_Mutation p.H320Y 0.17 deleterious(0) probably_damaging(0.995) TCGA-05-4398-01 19 41349862 41349862 C G CYP2A6 Missense_Mutation p.E442Q 0.12 possibly_damaging(0.767) TCGA-05-4398-01 19 43233356 43233356 G A PSG3 Missense_Mutation p.H388Y 0.48 tolerated(0.07) benign(0.313) TCGA-05-4398-01 19 43259311 43259311 A T PSG8 Missense_Mutation p.W273R 0.44 deleterious(0) probably_damaging(0.996) TCGA-05-4398-01 19 46543514 46543514 C T IGFL4 Silent p.L77L 0.25 TCGA-05-4398-01 19 50411471 50411471 C T NUP62 3'UTR 0.22 TCGA-05-4398-01 19 51628974 51628974 T C SIGLEC9 Missense_Mutation p.I181T 0.53 tolerated(1) benign(0.004) TCGA-05-4398-01 19 51729250 51729250 C T CD33 Nonsense_Mutation p.Q204* 0.24 TCGA-05-4398-01 19 52272376 52272376 C A FPR2 Silent p.V155V 0.08 TCGA-05-4398-01 19 52327946 52327946 C A FPR3 Silent p.R315R 0.38 TCGA-05-4398-01 19 52729033 52729033 C T PPP2R1A Silent p.V575V 0.10 TCGA-05-4398-01 19 53208717 53208717 C G ZNF611 Missense_Mutation p.G531R 0.46 deleterious(0.05) benign(0) TCGA-05-4398-01 19 54327411 54327411 G C NLRP12 Silent p.G6G 0.21 TCGA-05-4398-01 19 55295269 55295269 C A KIR2DL1 3'UTR 0.33 TCGA-05-4398-01 19 55301642 55301642 G A CTB-61M7.1 RNA 0.21 TCGA-05-4398-01 19 55341634 55341634 C A KIR3DL1 Silent p.R413R 0.26 TCGA-05-4398-01 19 58565273 58565273 G A ZSCAN1 Missense_Mutation p.V361I 0.21 tolerated(0.18) benign(0.005) TCGA-05-4398-01 19 59028649 59028649 G A ZBTB45 Missense_Mutation p.S131F 0.13 tolerated(0.06) benign(0.188) TCGA-05-4398-01 19 7625548 7625548 G T PNPLA6 Missense_Mutation p.Q1248H 0.33 tolerated(0.09) benign(0.192) TCGA-05-4398-01 19 8130912 8130912 C A FBN3 Missense_Mutation p.R2774L 0.31 tolerated(0.65) benign(0.001) TCGA-05-4398-01 19 8194190 8194190 G T FBN3 Silent p.R702R 0.29 TCGA-05-4398-01 19 9012535 9012535 G T MUC16 Missense_Mutation p.L12891I 0.44 probably_damaging(0.999) TCGA-05-4398-01 19 9046404 9046404 C T MUC16 Missense_Mutation p.V11743M 0.53 possibly_damaging(0.593) TCGA-05-4398-01 19 9046491 9046491 C T MUC16 Missense_Mutation p.D11714N 0.19 benign(0.007) TCGA-05-4398-01 19 9048898 9048898 G T MUC16 Silent p.T10911T 0.19 TCGA-05-4398-01 19 9048899 9048899 G T MUC16 Missense_Mutation p.T10911N 0.19 possibly_damaging(0.506) TCGA-05-4398-01 19 9072226 9072226 A T MUC16 Missense_Mutation p.S5074T 0.16 unknown(0) TCGA-05-4398-01 1 10211596 10211596 C T UBE4B Missense_Mutation p.P968L 0.21 deleterious(0) benign(0.179) TCGA-05-4398-01 1 109465136 109465136 A - GPSM2 Frame_Shift_Del p.K514Rfs*17 0.10 TCGA-05-4398-01 1 112318702 112318702 C A KCND3 Missense_Mutation p.L655F 0.11 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-05-4398-01 1 114524191 114524191 A T OLFML3 Missense_Mutation p.S341C 0.10 deleterious(0.03) probably_damaging(0.99) TCGA-05-4398-01 1 115220534 115220534 G C AMPD1 Missense_Mutation p.I440M 0.22 deleterious(0.02) probably_damaging(1) TCGA-05-4398-01 1 119427872 119427872 G T TBX15 Missense_Mutation p.A325D 0.13 tolerated(0.06) benign(0.036) TCGA-05-4398-01 1 12061527 12061527 C T MFN2 Nonsense_Mutation p.Q296* 0.17 TCGA-05-4398-01 1 12251948 12251948 A T TNFRSF1B Missense_Mutation p.K142M 0.15 deleterious(0) possibly_damaging(0.836) TCGA-05-4398-01 1 12919018 12919018 C A PRAMEF2 Missense_Mutation p.L52M 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-05-4398-01 1 145561457 145561457 C T ANKRD35 Missense_Mutation p.T382I 0.31 tolerated(1) benign(0) TCGA-05-4398-01 1 150689710 150689710 C A HORMAD1 Missense_Mutation p.V28L 0.06 tolerated(0.06) benign(0.279) TCGA-05-4398-01 1 150689711 150689711 C A HORMAD1 Missense_Mutation p.L27F 0.07 deleterious(0) probably_damaging(1) TCGA-05-4398-01 1 151298722 151298722 C T PI4KB 5'UTR 0.07 TCGA-05-4398-01 1 151537034 151537034 A G TUFT1 Missense_Mutation p.I120V 0.12 deleterious(0.02) possibly_damaging(0.607) TCGA-05-4398-01 1 152193135 152193135 G A HRNR Nonsense_Mutation p.Q324* 0.06 TCGA-05-4398-01 1 152282982 152282982 G T FLG Silent p.P1460P 0.13 TCGA-05-4398-01 1 152283359 152283359 C A FLG Nonsense_Mutation p.E1335* 0.06 TCGA-05-4398-01 1 152733252 152733252 G A KPRP Silent p.L396L 0.22 TCGA-05-4398-01 1 153312856 153312856 C A PGLYRP4 Splice_Site p.X275_splice 0.43 TCGA-05-4398-01 1 153655054 153655054 G T NPR1 Missense_Mutation p.G418C 0.07 deleterious(0) possibly_damaging(0.806) TCGA-05-4398-01 1 153745702 153745702 C T INTS3 Missense_Mutation p.R1029W 0.09 deleterious(0) probably_damaging(0.988) TCGA-05-4398-01 1 154544111 154544111 C A CHRNB2 Nonsense_Mutation p.S271* 0.13 TCGA-05-4398-01 1 154571062 154571062 C A ADAR Splice_Site p.X534_splice 0.10 TCGA-05-4398-01 1 155161953 155161953 T C MUC1 Silent p.V60V 0.13 TCGA-05-4398-01 1 155931973 155931973 T A ARHGEF2 Missense_Mutation p.Q381L 0.13 tolerated(0.06) probably_damaging(0.967) TCGA-05-4398-01 1 156565192 156565192 C T GPATCH4 Missense_Mutation p.G314E 0.09 tolerated_low_confidence(0.43) benign(0.001) TCGA-05-4398-01 1 156617860 156617860 G T BCAN Missense_Mutation p.D243Y 0.41 deleterious(0) possibly_damaging(0.761) TCGA-05-4398-01 1 156845387 156845387 C A NTRK1 Missense_Mutation p.S477Y 0.09 deleterious(0) possibly_damaging(0.613) TCGA-05-4398-01 1 156849069 156849069 G A NTRK1 Missense_Mutation p.R654H 0.08 deleterious(0) probably_damaging(0.995) TCGA-05-4398-01 1 15789916 15789916 T A CELA2A Missense_Mutation p.V131D 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-05-4398-01 1 15789989 15789989 C - CELA2A Frame_Shift_Del p.Y156Tfs*41 0.12 TCGA-05-4398-01 1 158548798 158548798 G T OR10X1 Missense_Mutation p.L298I 0.15 deleterious(0) probably_damaging(0.998) TCGA-05-4398-01 1 158644338 158644338 G T SPTA1 Missense_Mutation p.Q414K 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-05-4398-01 1 158725187 158725187 G T OR6K6 Missense_Mutation p.L194F 0.07 deleterious(0.02) possibly_damaging(0.867) TCGA-05-4398-01 1 159272177 159272177 C A FCER1A Missense_Mutation p.P8H 0.07 deleterious(0) possibly_damaging(0.862) TCGA-05-4398-01 1 160535278 160535278 C A CD84 Nonsense_Mutation p.E102* 0.06 TCGA-05-4398-01 1 160535279 160535279 C A CD84 Missense_Mutation p.M101I 0.07 tolerated(0.07) benign(0.018) TCGA-05-4398-01 1 161953963 161953963 G T OLFML2B Silent p.I585I 0.13 TCGA-05-4398-01 1 162535877 162535877 A G UAP1 Missense_Mutation p.K7E 0.05 tolerated(0.15) benign(0.008) TCGA-05-4398-01 1 16261133 16261133 G C SPEN Missense_Mutation p.A2800P 0.06 benign(0.031) TCGA-05-4398-01 1 16352635 16352635 G C CLCNKA Missense_Mutation p.A131P 0.20 deleterious(0.04) benign(0.427) TCGA-05-4398-01 1 167096014 167096014 T - DUSP27 Frame_Shift_Del p.I549Tfs*28 0.13 TCGA-05-4398-01 1 170964579 170964579 C T MROH9 Missense_Mutation p.A415V 0.12 tolerated(0.29) possibly_damaging(0.477) TCGA-05-4398-01 1 17570704 17570704 C A PADI1 Missense_Mutation p.P653H 0.24 deleterious(0) probably_damaging(1) TCGA-05-4398-01 1 17668497 17668497 C T PADI4 Silent p.L238L 0.23 TCGA-05-4398-01 1 181452842 181452842 G A CACNA1E 5'Flank 0.19 TCGA-05-4398-01 1 183190027 183190027 G A LAMC2 Missense_Mutation p.G191R 0.19 deleterious(0) probably_damaging(1) TCGA-05-4398-01 1 18691926 18691926 G T IGSF21 Silent p.L250L 0.21 TCGA-05-4398-01 1 186946793 186946794 - T PLA2G4A Frame_Shift_Ins p.D613* 0.16 TCGA-05-4398-01 1 200017512 200017512 A T NR5A2 Missense_Mutation p.N226Y 0.06 tolerated(0.1) benign(0.019) TCGA-05-4398-01 1 203693068 203693068 G T ATP2B4 Missense_Mutation p.Q1028H 0.42 deleterious(0.02) probably_damaging(0.93) TCGA-05-4398-01 1 204586854 204586854 C T LRRN2 3'UTR 0.16 TCGA-05-4398-01 1 205027166 205027166 C T CNTN2 Missense_Mutation p.A63V 0.10 tolerated(0.08) probably_damaging(1) TCGA-05-4398-01 1 207074989 207074989 C A IL24 Missense_Mutation p.Q153K 0.16 tolerated(0.11) benign(0.136) TCGA-05-4398-01 1 207871002 207871002 C G CR1L Missense_Mutation p.S339R 0.11 tolerated(0.05) benign(0.225) TCGA-05-4398-01 1 215259917 215259917 C A KCNK2 Missense_Mutation p.Q85K 0.37 tolerated(0.25) possibly_damaging(0.816) TCGA-05-4398-01 1 215960159 215960159 C T USH2A Missense_Mutation p.G3414S 0.36 possibly_damaging(0.721) TCGA-05-4398-01 1 216373152 216373152 G A USH2A Silent p.L1210L 0.17 TCGA-05-4398-01 1 22157584 22157584 C G HSPG2 Splice_Site p.X3855_splice 0.25 TCGA-05-4398-01 1 226576435 226576435 C T PARP1 Silent p.V213V 0.05 TCGA-05-4398-01 1 228210557 228210557 C G WNT3A Missense_Mutation p.N87K 0.11 deleterious(0) probably_damaging(0.996) TCGA-05-4398-01 1 228486332 228486332 A G OBSCN Missense_Mutation p.Q4375R 0.26 benign(0.416) TCGA-05-4398-01 1 22913015 22913015 T G EPHA8 Missense_Mutation p.L289R 0.13 tolerated(0.55) benign(0.005) TCGA-05-4398-01 1 22924292 22924292 C G EPHA8 Missense_Mutation p.A685G 0.06 deleterious(0) probably_damaging(0.999) TCGA-05-4398-01 1 232144735 232144735 G T DISC1 Missense_Mutation p.L749F 0.12 tolerated(0.71) benign(0.001) TCGA-05-4398-01 1 23417697 23417697 G A LUZP1 Missense_Mutation p.H1020Y 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.713) TCGA-05-4398-01 1 236881170 236881170 T A ACTN2 Missense_Mutation p.W47R 0.22 deleterious(0) probably_damaging(1) TCGA-05-4398-01 1 236890981 236890981 G T ACTN2 Missense_Mutation p.W180C 0.10 deleterious(0) probably_damaging(1) TCGA-05-4398-01 1 237167695 237167695 G T MT1HL1 5'UTR 0.26 TCGA-05-4398-01 1 23769112 23769112 C T ASAP3 Intron 0.22 TCGA-05-4398-01 1 237791358 237791358 A T RYR2 Nonsense_Mutation p.K2140* 0.20 TCGA-05-4398-01 1 237893570 237893570 G C RYR2 Missense_Mutation p.V3617L 0.17 benign(0.065) TCGA-05-4398-01 1 237947412 237947412 G T RYR2 Missense_Mutation p.G4134C 0.24 probably_damaging(1) TCGA-05-4398-01 1 237947550 237947550 G T RYR2 Missense_Mutation p.G4180C 0.10 probably_damaging(1) TCGA-05-4398-01 1 247587214 247587214 C T NLRP3 Missense_Mutation p.R157C 0.09 tolerated(0.07) probably_damaging(0.999) TCGA-05-4398-01 1 249211025 249211025 G T PGBD2 Missense_Mutation p.C81F 0.20 tolerated(0.08) benign(0) TCGA-05-4398-01 1 26784343 26784343 A T DHDDS Missense_Mutation p.I202F 0.23 deleterious(0) benign(0.139) TCGA-05-4398-01 1 2938328 2938328 T A ACTRT2 Silent p.S26S 0.17 TCGA-05-4398-01 1 29476680 29476680 G T SRSF4 Silent p.S201S 0.12 TCGA-05-4398-01 1 32566053 32566053 G A TMEM39B Missense_Mutation p.E376K 0.13 tolerated(0.79) probably_damaging(0.998) TCGA-05-4398-01 1 37271748 37271748 C A GRIK3 Silent p.G757G 0.08 TCGA-05-4398-01 1 37324781 37324781 G T GRIK3 Silent p.T344T 0.10 TCGA-05-4398-01 1 38019721 38019721 T A SNIP1 Missense_Mutation p.E37V 0.26 tolerated_low_confidence(0.11) possibly_damaging(0.478) TCGA-05-4398-01 1 39880114 39880114 C A MACF1 Intron 0.16 TCGA-05-4398-01 1 45232525 45232525 G T KIF2C Nonsense_Mutation p.E667* 0.44 TCGA-05-4398-01 1 45797911 45797911 G T MUTYH Missense_Mutation p.A284D 0.19 deleterious(0) probably_damaging(0.998) TCGA-05-4398-01 1 46159475 46159475 G A TMEM69 Silent p.L214L 0.08 TCGA-05-4398-01 1 46206734 46206734 C T IPP Missense_Mutation p.R188Q 0.10 tolerated(0.39) benign(0.028) TCGA-05-4398-01 1 46727024 46727024 G A RAD54L Silent p.Q286Q 0.09 TCGA-05-4398-01 1 47582406 47582406 T A CYP4Z1 Splice_Site p.X450_splice 0.12 TCGA-05-4398-01 1 4832465 4832465 C A AJAP1 Missense_Mutation p.T348K 0.22 deleterious(0) possibly_damaging(0.742) TCGA-05-4398-01 1 48708153 48708153 C T SLC5A9 Missense_Mutation p.R593W 0.17 deleterious(0.02) probably_damaging(1) TCGA-05-4398-01 1 57349153 57349153 G T C8A Splice_Site p.X219_splice 0.22 TCGA-05-4398-01 1 57420396 57420396 T G C8B Missense_Mutation p.M166L 0.17 tolerated(0.14) benign(0.012) TCGA-05-4398-01 1 62979532 62979532 C A DOCK7 Missense_Mutation p.S1294I 0.09 deleterious(0) probably_damaging(0.937) TCGA-05-4398-01 1 70488916 70488916 G C LRRC7 Missense_Mutation p.Q513H 0.12 tolerated_low_confidence(0.07) benign(0.101) TCGA-05-4398-01 1 70505055 70505055 G T LRRC7 Missense_Mutation p.R1145I 0.09 tolerated(0.08) probably_damaging(0.996) TCGA-05-4398-01 1 71318473 71318473 A C PTGER3 3'UTR 0.12 TCGA-05-4398-01 1 71418573 71418573 T C PTGER3 3'UTR 0.08 TCGA-05-4398-01 1 75037434 75037434 C A C1orf173 Missense_Mutation p.M1320I 0.26 tolerated(0.4) benign(0.003) TCGA-05-4398-01 1 75684224 75684224 C A SLC44A5 Missense_Mutation p.D494Y 0.10 deleterious(0.01) possibly_damaging(0.903) TCGA-05-4398-01 1 76363740 76363740 A T MSH4 Missense_Mutation p.K835M 0.11 deleterious(0) possibly_damaging(0.823) TCGA-05-4398-01 1 76397818 76397818 T A ASB17 Missense_Mutation p.K53N 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.788) TCGA-05-4398-01 1 77752625 77752625 G T AK5 Splice_Site p.X21_splice 0.17 TCGA-05-4398-01 1 79120848 79120848 C G IFI44 Missense_Mutation p.T215R 0.27 deleterious(0) probably_damaging(0.959) TCGA-05-4398-01 1 82409232 82409232 C A LPHN2 Nonsense_Mutation p.S326* 0.10 TCGA-05-4398-01 1 85787122 85787122 G A DDAH1 3'UTR 0.15 TCGA-05-4398-01 1 91728125 91728125 C A HFM1 Silent p.S1333S 0.20 TCGA-05-4398-01 1 91781705 91781705 T C HFM1 Missense_Mutation p.K979E 0.12 deleterious(0.02) possibly_damaging(0.867) TCGA-05-4398-01 1 92941703 92941703 G A GFI1 Silent p.I384I 0.25 TCGA-05-4398-01 1 99470110 99470110 C T LPPR5 Missense_Mutation p.V40M 0.15 tolerated(0.08) possibly_damaging(0.858) TCGA-05-4398-01 20 1616967 1616967 G T SIRPG Nonsense_Mutation p.Y205* 0.32 TCGA-05-4398-01 20 18123564 18123564 G T CSRP2BP Splice_Site p.X87_splice 0.19 TCGA-05-4398-01 20 23350848 23350848 G C GZF1 Missense_Mutation p.D636H 0.12 deleterious(0.01) possibly_damaging(0.546) TCGA-05-4398-01 20 25481599 25481599 C G NINL Silent p.V303V 0.38 TCGA-05-4398-01 20 2592925 2592925 G T TMC2 Missense_Mutation p.R561L 0.10 tolerated(0.82) benign(0.024) TCGA-05-4398-01 20 30676371 30676371 G A HCK Missense_Mutation p.G339E 0.07 deleterious(0) probably_damaging(0.992) TCGA-05-4398-01 20 36936026 36936026 A G BPI Missense_Mutation p.D67G 0.09 deleterious(0) probably_damaging(0.947) TCGA-05-4398-01 20 43383069 43383069 G T RIMS4 3'Flank 0.19 TCGA-05-4398-01 20 44637694 44637694 G C MMP9 Missense_Mutation p.Q43H 0.18 deleterious(0) possibly_damaging(0.623) TCGA-05-4398-01 20 44664168 44664168 G T SLC12A5 Silent p.P114P 0.52 TCGA-05-4398-01 20 44815276 44815276 C T CDH22 Silent p.L538L 0.06 TCGA-05-4398-01 20 48140741 48140741 G - PTGIS Frame_Shift_Del p.L237Cfs*99 0.16 TCGA-05-4398-01 20 57599398 57599398 C G TUBB1 Missense_Mutation p.R306G 0.13 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-05-4398-01 20 57769383 57769383 G T ZNF831 Silent p.L1103L 0.12 TCGA-05-4398-01 20 5903186 5903186 G A CHGB Silent p.E132E 0.71 TCGA-05-4398-01 20 62836921 62836921 C A MYT1 Silent p.P55P 0.29 TCGA-05-4398-01 20 8630054 8630054 A T PLCB1 Silent p.R184R 0.05 TCGA-05-4398-01 20 9546647 9546647 A T PAK7 Missense_Mutation p.S459T 0.32 deleterious(0) probably_damaging(0.933) TCGA-05-4398-01 21 10862956 10862956 G A IGHV1OR21-1 Silent p.Q84Q 0.17 TCGA-05-4398-01 21 10998311 10998311 C A TPTE RNA 0.11 TCGA-05-4398-01 21 11039057 11039057 C A BAGE2 RNA 0.03 TCGA-05-4398-01 21 27141328 27141328 G T GABPA Missense_Mutation p.G384W 0.12 deleterious(0) probably_damaging(1) TCGA-05-4398-01 21 27354704 27354704 T C APP Missense_Mutation p.K393E 0.06 deleterious(0) probably_damaging(0.923) TCGA-05-4398-01 21 28302316 28302316 C A ADAMTS5 Missense_Mutation p.R705I 0.07 deleterious(0) benign(0.372) TCGA-05-4398-01 21 32253398 32253398 C T KRTAP11-1 Missense_Mutation p.R149K 0.12 deleterious(0.05) possibly_damaging(0.566) TCGA-05-4398-01 21 34923708 34923708 A G SON Missense_Mutation p.H724R 0.07 benign(0.227) TCGA-05-4398-01 21 35514856 35514856 C T MRPS6 Missense_Mutation p.P112S 0.07 tolerated(0.28) benign(0.004) TCGA-05-4398-01 22 16287898 16287898 G T POTEH 5'UTR 0.28 TCGA-05-4398-01 22 17073111 17073111 C T CCT8L2 Silent p.L110L 0.17 TCGA-05-4398-01 22 20040998 20040998 A T TANGO2 Missense_Mutation p.S102C 0.07 tolerated(0.18) benign(0.443) TCGA-05-4398-01 22 22039174 22039176 AGA - PPIL2 In_Frame_Del p.K232del 0.30 TCGA-05-4398-01 22 23011092 23011092 G T IGLV3-27 Missense_Mutation p.R52L 0.54 tolerated(0.07) benign(0.027) TCGA-05-4398-01 22 23011113 23011113 G A IGLV3-27 Missense_Mutation p.G59D 0.52 deleterious(0.03) benign(0.397) TCGA-05-4398-01 22 31013404 31013407 ACAG - TCN2 Frame_Shift_Del p.R344Sfs*15 0.21 TCGA-05-4398-01 22 31484540 31484540 G T SMTN Missense_Mutation p.R81L 0.16 tolerated(0.78) benign(0.319) TCGA-05-4398-01 22 32841622 32841622 C A BPIFC Missense_Mutation p.M198I 0.06 tolerated(0.23) benign(0.009) TCGA-05-4398-01 22 35783020 35783020 G C HMOX1 Missense_Mutation p.G163R 0.08 deleterious(0) probably_damaging(1) TCGA-05-4398-01 22 36177704 36177704 C G RBFOX2 Silent p.L184L 0.24 TCGA-05-4398-01 22 36691697 36691697 G T MYH9 Silent p.I1113I 0.21 TCGA-05-4398-01 22 41923336 41923336 C A ACO2 Silent p.G666G 0.08 TCGA-05-4398-01 22 44392410 44392410 C T SAMM50 3'UTR 0.23 TCGA-05-4398-01 2 100052327 100052327 T A REV1 Silent p.S430S 0.24 TCGA-05-4398-01 2 105859086 105859086 G T GPR45 Silent p.V257V 0.13 TCGA-05-4398-01 2 113742535 113742535 T A IL36G Missense_Mutation p.I140N 0.39 deleterious(0) probably_damaging(0.995) TCGA-05-4398-01 2 118577319 118577319 T C DDX18 Silent p.D155D 0.12 TCGA-05-4398-01 2 120723086 120723086 G A PTPN4 Missense_Mutation p.R808H 0.09 tolerated(0.29) benign(0.187) TCGA-05-4398-01 2 128338352 128338352 C A MYO7B Missense_Mutation p.D345E 0.33 tolerated(1) benign(0.103) TCGA-05-4398-01 2 128408648 128408648 C T GPR17 Silent p.L141L 0.07 TCGA-05-4398-01 2 128477639 128477639 C G WDR33 Missense_Mutation p.G654R 0.23 tolerated_low_confidence(0.1) unknown(0) TCGA-05-4398-01 2 141113955 141113955 C A LRP1B Missense_Mutation p.C3829F 0.36 benign(0.308) TCGA-05-4398-01 2 141680576 141680576 G T LRP1B Silent p.R1093R 0.27 TCGA-05-4398-01 2 141777508 141777508 C A LRP1B Silent p.V651V 0.32 TCGA-05-4398-01 2 145156310 145156310 G T ZEB2 Missense_Mutation p.P815H 0.31 deleterious(0) probably_damaging(0.936) TCGA-05-4398-01 2 145156311 145156311 G T ZEB2 Missense_Mutation p.P815T 0.32 deleterious(0) possibly_damaging(0.879) TCGA-05-4398-01 2 152322272 152322272 A T RIF1 Missense_Mutation p.I2080F 0.11 tolerated_low_confidence(0.11) benign(0.02) TCGA-05-4398-01 2 152410462 152410462 G T NEB Silent p.A6502A 0.26 TCGA-05-4398-01 2 152534675 152534675 C A NEB Missense_Mutation p.K1094N 0.09 benign(0.405) TCGA-05-4398-01 2 155711814 155711814 C G KCNJ3 Missense_Mutation p.R499G 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.645) TCGA-05-4398-01 2 160728993 160728993 C A LY75-CD302 Nonsense_Mutation p.E696* 0.08 TCGA-05-4398-01 2 162272897 162272897 G T TBR1 5'UTR 0.06 TCGA-05-4398-01 2 163070536 163070536 C A FAP Missense_Mutation p.C305F 0.24 deleterious(0.02) probably_damaging(0.983) TCGA-05-4398-01 2 165948857 165948857 C T SCN3A Missense_Mutation p.E1572K 0.09 deleterious(0) probably_damaging(0.997) TCGA-05-4398-01 2 166168555 166168555 G T SCN2A Missense_Mutation p.G331W 0.07 deleterious(0) probably_damaging(0.94) TCGA-05-4398-01 2 166210846 166210846 C A SCN2A Missense_Mutation p.R1022S 0.14 tolerated(0.39) benign(0.313) TCGA-05-4398-01 2 166903468 166903468 T A SCN1A Nonsense_Mutation p.K397* 0.20 TCGA-05-4398-01 2 168106557 168106557 A T XIRP2 Missense_Mutation p.K2885N 0.19 benign(0.045) TCGA-05-4398-01 2 169791861 169791861 A C ABCB11 Silent p.L963L 0.11 TCGA-05-4398-01 2 170048350 170048350 C G LRP2 Missense_Mutation p.K3008N 0.08 benign(0) TCGA-05-4398-01 2 170592412 170592412 A T KLHL23 Silent p.T296T 0.31 TCGA-05-4398-01 2 171822343 171822343 C T GORASP2 Silent p.G354G 0.07 TCGA-05-4398-01 2 175440024 175440024 C T WIPF1 Missense_Mutation p.G89D 0.06 tolerated_low_confidence(0.08) benign(0.05) TCGA-05-4398-01 2 178326701 178326701 C T AGPS Silent p.R317R 0.08 TCGA-05-4398-01 2 178981037 178981037 G A RBM45 Missense_Mutation p.D117N 0.09 tolerated(0.14) probably_damaging(0.984) TCGA-05-4398-01 2 179416962 179416962 A T TTN Missense_Mutation p.L30222H 0.08 TCGA-05-4398-01 2 179438511 179438511 A G TTN Silent p.N24116N 0.07 TCGA-05-4398-01 2 179455772 179455772 C A TTN Missense_Mutation p.S20227I 0.06 TCGA-05-4398-01 2 179489195 179489195 C A TTN Missense_Mutation p.V14938L 0.09 TCGA-05-4398-01 2 179544998 179544998 A T TTN Missense_Mutation p.V11134E 0.05 TCGA-05-4398-01 2 182347350 182347350 G T ITGA4 Missense_Mutation p.R338I 0.18 deleterious(0) probably_damaging(1) TCGA-05-4398-01 2 186671509 186671509 G A FSIP2 Missense_Mutation p.D5915N 0.15 benign(0.087) TCGA-05-4398-01 2 186672480 186672480 C A FSIP2 Silent p.I6238I 0.30 TCGA-05-4398-01 2 187698691 187698691 G A ZSWIM2 Silent p.H270H 0.10 TCGA-05-4398-01 2 189868724 189868724 C T COL3A1 Missense_Mutation p.P893L 0.07 unknown(0) TCGA-05-4398-01 2 189870139 189870139 G T COL3A1 Missense_Mutation p.G999C 0.11 probably_damaging(1) TCGA-05-4398-01 2 191353516 191353516 G A MFSD6 Missense_Mutation p.M588I 0.42 tolerated(0.29) benign(0.032) TCGA-05-4398-01 2 196821991 196821991 G A DNAH7 Silent p.V1024V 0.07 TCGA-05-4398-01 2 200245120 200245120 C A SATB2 Missense_Mutation p.Q188H 0.12 deleterious(0.03) probably_damaging(0.984) TCGA-05-4398-01 2 202625565 202625565 C A ALS2 Intron 0.16 TCGA-05-4398-01 2 204001388 204001388 G A NBEAL1 Missense_Mutation p.E1457K 0.05 tolerated(0.07) possibly_damaging(0.593) TCGA-05-4398-01 2 20402564 20402564 T A SDC1 Missense_Mutation p.Y299F 0.43 deleterious(0) probably_damaging(0.999) TCGA-05-4398-01 2 204116833 204116833 G C CYP20A1 Splice_Site p.X144_splice 0.06 TCGA-05-4398-01 2 208795744 208795744 G A PLEKHM3 Silent p.L598L 0.28 TCGA-05-4398-01 2 209271772 209271772 G C PTH2R Missense_Mutation p.A2P 0.26 deleterious_low_confidence(0.01) benign(0) TCGA-05-4398-01 2 209345847 209345847 G T PTH2R Missense_Mutation p.W345L 0.18 tolerated(0.19) possibly_damaging(0.9) TCGA-05-4398-01 2 211476856 211476856 C A CPS1 Missense_Mutation p.R809S 0.13 deleterious(0) probably_damaging(1) TCGA-05-4398-01 2 211518747 211518747 A T CPS1 Splice_Site p.X1167_splice 0.07 TCGA-05-4398-01 2 218713154 218713154 G A TNS1 Missense_Mutation p.H571Y 0.38 tolerated(0.12) benign(0.136) TCGA-05-4398-01 2 227779021 227779021 A T RHBDD1 Missense_Mutation p.E270D 0.39 tolerated(0.05) benign(0.335) TCGA-05-4398-01 2 233272591 233272591 A C ALPPL2 Missense_Mutation p.Q171P 0.10 deleterious(0.01) probably_damaging(0.994) TCGA-05-4398-01 2 233759415 233759415 C A NGEF Intron 0.41 TCGA-05-4398-01 2 234627526 234627526 C T UGT1A4 Silent p.L20L 0.15 TCGA-05-4398-01 2 242066278 242066278 C A PASK Silent p.P684P 0.11 TCGA-05-4398-01 2 242607954 242607954 G C ATG4B Splice_Site p.X271_splice 0.47 TCGA-05-4398-01 2 242607955 242607955 G T ATG4B Missense_Mutation p.G271V 0.47 deleterious(0) probably_damaging(0.978) TCGA-05-4398-01 2 24533500 24533500 T A ITSN2 Silent p.T138T 0.11 TCGA-05-4398-01 2 26502085 26502085 G C HADHB Missense_Mutation p.R238P 0.15 deleterious(0) probably_damaging(0.99) TCGA-05-4398-01 2 31472333 31472333 G T EHD3 Silent p.R167R 0.38 TCGA-05-4398-01 2 3341899 3341899 C A TSSC1 Missense_Mutation p.D50Y 0.33 deleterious(0) probably_damaging(0.983) TCGA-05-4398-01 2 37428995 37428995 C G CEBPZ Missense_Mutation p.R1026T 0.09 deleterious(0.01) possibly_damaging(0.48) TCGA-05-4398-01 2 37429980 37429980 C G CEBPZ Missense_Mutation p.G991A 0.12 tolerated(0.07) possibly_damaging(0.802) TCGA-05-4398-01 2 39993217 39993217 C A THUMPD2 Silent p.V261V 0.38 TCGA-05-4398-01 2 40655643 40655643 C G SLC8A1 Missense_Mutation p.G593A 0.37 deleterious(0.02) probably_damaging(0.998) TCGA-05-4398-01 2 43926908 43926908 A T PLEKHH2 Missense_Mutation p.T271S 0.08 tolerated(0.82) benign(0.001) TCGA-05-4398-01 2 50733708 50733708 C G NRXN1 Missense_Mutation p.E848Q 0.38 tolerated(0.1) probably_damaging(0.978) TCGA-05-4398-01 2 51254924 51254924 C T NRXN1 Missense_Mutation p.R163H 0.17 tolerated(0.1) benign(0.002) TCGA-05-4398-01 2 54852019 54852019 G T SPTBN1 Nonsense_Mutation p.E421* 0.39 TCGA-05-4398-01 2 54852032 54852032 G T SPTBN1 Missense_Mutation p.R425L 0.42 tolerated(0.06) benign(0.258) TCGA-05-4398-01 2 64863326 64863326 C G SERTAD2 Missense_Mutation p.G227A 0.13 tolerated(0.11) benign(0.316) TCGA-05-4398-01 2 71043307 71043307 G A CLEC4F Silent p.A402A 0.08 TCGA-05-4398-01 2 75118049 75118049 G T HK2 Missense_Mutation p.R912L 0.47 deleterious(0.03) benign(0.114) TCGA-05-4398-01 2 79255422 79255422 G T REG3G 3'UTR 0.14 TCGA-05-4398-01 2 84800703 84800703 A T DNAH6 Missense_Mutation p.Q639L 0.09 tolerated(0.19) benign(0.001) TCGA-05-4398-01 2 89156827 89156827 G T IGKC 3'UTR 0.13 TCGA-05-4398-01 2 89247247 89247247 C A IGKV1-5 Missense_Mutation p.W16C 0.29 tolerated(0.08) benign(0.016) TCGA-05-4398-01 2 8930077 8930077 G A KIDINS220 Silent p.F518F 0.08 TCGA-05-4398-01 2 89442617 89442617 A T IGKV3-20 5'UTR 0.11 TCGA-05-4398-01 2 98263846 98263846 A T COX5B Missense_Mutation p.T73S 0.10 tolerated(0.12) probably_damaging(0.991) TCGA-05-4398-01 2 99980853 99980853 C A EIF5B Silent p.A419A 0.08 TCGA-05-4398-01 3 10417183 10417183 C A ATP2B2 Silent p.T449T 0.22 TCGA-05-4398-01 3 105290786 105290786 G C ALCAM 3'UTR 0.11 TCGA-05-4398-01 3 108278872 108278872 T G KIAA1524 Missense_Mutation p.K611Q 0.11 tolerated(0.49) possibly_damaging(0.821) TCGA-05-4398-01 3 108474748 108474748 C A RETNLB Missense_Mutation p.M71I 0.19 tolerated(0.15) benign(0.043) TCGA-05-4398-01 3 119134833 119134833 C G ARHGAP31 Missense_Mutation p.P1353A 0.06 deleterious(0) probably_damaging(0.997) TCGA-05-4398-01 3 119720926 119720926 G A GSK3B Silent p.A83A 0.21 TCGA-05-4398-01 3 120389380 120389380 C T HGD Splice_Site p.X59_splice 0.07 TCGA-05-4398-01 3 122264292 122264292 C G PARP9 Missense_Mutation p.L492F 0.10 tolerated(0.53) benign(0.008) TCGA-05-4398-01 3 123633788 123633788 A G CCDC14 Silent p.D859D 0.10 TCGA-05-4398-01 3 128849008 128849008 C T ISY1 Silent p.R280R 0.11 TCGA-05-4398-01 3 131418774 131418774 T G CPNE4 Silent p.T137T 0.38 TCGA-05-4398-01 3 13427867 13427867 T G NUP210 Missense_Mutation p.N242T 0.07 deleterious(0.01) probably_damaging(0.971) TCGA-05-4398-01 3 134825363 134825363 C T EPHB1 Silent p.S293S 0.26 TCGA-05-4398-01 3 138738769 138738769 G T PRR23B Missense_Mutation p.H245Q 0.15 tolerated(0.41) benign(0.047) TCGA-05-4398-01 3 139181102 139181102 A T RBP2 Missense_Mutation p.V35E 0.19 tolerated(1) benign(0.116) TCGA-05-4398-01 3 142253921 142253921 C A ATR Splice_Site p.X1315_splice 0.27 TCGA-05-4398-01 3 1445042 1445042 C A CNTN6 Silent p.T1009T 0.19 TCGA-05-4398-01 3 14564532 14564532 C T GRIP2 RNA 0.07 TCGA-05-4398-01 3 145806427 145806427 T C PLOD2 Missense_Mutation p.I317M 0.46 deleterious(0.01) benign(0.041) TCGA-05-4398-01 3 147106587 147106587 G A ZIC4 3'UTR 0.10 TCGA-05-4398-01 3 155571806 155571806 C A SLC33A1 5'UTR 0.29 TCGA-05-4398-01 3 160951236 160951236 G T NMD3 Missense_Mutation p.R109I 0.28 deleterious(0) probably_damaging(1) TCGA-05-4398-01 3 16358231 16358231 G A RFTN1 3'UTR 0.09 TCGA-05-4398-01 3 184082795 184082795 C G POLR2H Missense_Mutation p.L39V 0.13 deleterious(0.03) probably_damaging(0.981) TCGA-05-4398-01 3 19975080 19975080 C A EFHB Missense_Mutation p.R144I 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.553) TCGA-05-4398-01 3 3078979 3078979 C A CNTN4 Missense_Mutation p.R687S 0.11 tolerated(0.72) benign(0.018) TCGA-05-4398-01 3 30891521 30891521 A C GADL1 Silent p.G206G 0.11 TCGA-05-4398-01 3 37458897 37458897 G T C3orf35 Missense_Mutation p.R47I 0.20 deleterious_low_confidence(0.03) benign(0.068) TCGA-05-4398-01 3 38766748 38766748 C A SCN10A Missense_Mutation p.G1049C 0.17 deleterious(0.02) benign(0.02) TCGA-05-4398-01 3 40352459 40352459 A T EIF1B Missense_Mutation p.Q36L 0.14 deleterious(0) benign(0.123) TCGA-05-4398-01 3 44943063 44943063 G T TGM4 Silent p.G235G 0.12 TCGA-05-4398-01 3 46415173 46415173 C - CCR5 Frame_Shift_Del p.Q261Rfs*6 0.14 TCGA-05-4398-01 3 48603953 48603953 G T COL7A1 Missense_Mutation p.A2783D 0.07 probably_damaging(0.99) TCGA-05-4398-01 3 48613683 48613683 G T COL7A1 Missense_Mutation p.P1940Q 0.07 unknown(0) TCGA-05-4398-01 3 49694957 49694957 C T BSN Silent p.A2656A 0.25 TCGA-05-4398-01 3 52324424 52324424 G T GLYCTK Silent p.R22R 0.15 TCGA-05-4398-01 3 53766839 53766839 A C CACNA1D Intron 0.10 TCGA-05-4398-01 3 54958983 54958983 C A LRTM1 Silent p.L89L 0.10 TCGA-05-4398-01 3 62358243 62358243 C - FEZF2 Frame_Shift_Del p.A101Rfs*146 0.50 TCGA-05-4398-01 3 74420485 74420485 C T CNTN3 Missense_Mutation p.V174I 0.07 tolerated(0.7) benign(0.059) TCGA-05-4398-01 3 74535768 74535768 C A CNTN3 Missense_Mutation p.G66V 0.14 deleterious(0) probably_damaging(1) TCGA-05-4398-01 3 88039932 88039932 G A HTR1F Silent p.L11L 0.12 TCGA-05-4398-01 3 89498500 89498500 A T EPHA3 Silent p.P824P 0.12 TCGA-05-4398-01 3 98217148 98217148 C A OR5K2 Silent p.V208V 0.16 TCGA-05-4398-01 4 10502976 10502976 C A CLNK Missense_Mutation p.L348F 0.10 deleterious(0) probably_damaging(1) TCGA-05-4398-01 4 1073450 1073450 G C RNF212 Missense_Mutation p.S164C 0.14 deleterious(0.01) possibly_damaging(0.904) TCGA-05-4398-01 4 108866742 108866742 G T CYP2U1 Silent p.S369S 0.10 TCGA-05-4398-01 4 113353610 113353610 C G ALPK1 Missense_Mutation p.I969M 0.19 tolerated(0.08) possibly_damaging(0.71) TCGA-05-4398-01 4 113541196 113541196 G A C4orf21 Missense_Mutation p.L105F 0.13 deleterious(0.01) possibly_damaging(0.899) TCGA-05-4398-01 4 124322828 124322828 G A SPRY1 Missense_Mutation p.D28N 0.13 tolerated(0.18) benign(0.439) TCGA-05-4398-01 4 128816214 128816214 C G PLK4 Missense_Mutation p.S890C 0.09 deleterious(0) probably_damaging(0.968) TCGA-05-4398-01 4 134071803 134071803 G C PCDH10 Missense_Mutation p.D170H 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-05-4398-01 4 143129581 143129581 T A INPP4B Nonsense_Mutation p.K357* 0.11 TCGA-05-4398-01 4 143191873 143191873 C A INPP4B Missense_Mutation p.M186I 0.10 tolerated(0.08) possibly_damaging(0.729) TCGA-05-4398-01 4 146067520 146067520 C A OTUD4 Missense_Mutation p.G376C 0.11 deleterious(0) probably_damaging(0.996) TCGA-05-4398-01 4 153244298 153244298 G C FBXW7 Missense_Mutation p.P620R 0.16 deleterious(0.04) possibly_damaging(0.48) TCGA-05-4398-01 4 153896824 153896824 G C FHDC1 Missense_Mutation p.R794T 0.13 tolerated(0.55) benign(0.001) TCGA-05-4398-01 4 154624696 154624696 C T TLR2 Silent p.L213L 0.14 TCGA-05-4398-01 4 156135639 156135639 T A NPY2R Missense_Mutation p.L183Q 0.08 deleterious(0.03) probably_damaging(0.941) TCGA-05-4398-01 4 158257770 158257770 G A GRIA2 Nonsense_Mutation p.W572* 0.11 TCGA-05-4398-01 4 162459330 162459330 C A FSTL5 Missense_Mutation p.A434S 0.11 deleterious(0.03) probably_damaging(0.97) TCGA-05-4398-01 4 169632897 169632897 G A PALLD Missense_Mutation p.R596K 0.38 tolerated(1) benign(0.004) TCGA-05-4398-01 4 173803979 173803979 G A GALNTL6 Missense_Mutation p.R321Q 0.17 tolerated(0.09) probably_damaging(0.963) TCGA-05-4398-01 4 187540161 187540161 C A FAT1 Missense_Mutation p.V2527F 0.13 possibly_damaging(0.519) TCGA-05-4398-01 4 22390301 22390301 C A GPR125 Missense_Mutation p.G998V 0.22 tolerated(0.23) probably_damaging(0.987) TCGA-05-4398-01 4 46060556 46060556 G A GABRG1 Nonsense_Mutation p.Q237* 0.10 TCGA-05-4398-01 4 46125848 46125848 A G GABRG1 Missense_Mutation p.L28P 0.08 deleterious(0.03) probably_damaging(0.979) TCGA-05-4398-01 4 46314713 46314713 G T GABRA2 Missense_Mutation p.F92L 0.18 deleterious(0) probably_damaging(1) TCGA-05-4398-01 4 47939841 47939841 G C CNGA1 Missense_Mutation p.L293V 0.25 deleterious(0.02) possibly_damaging(0.615) TCGA-05-4398-01 4 52945942 52945942 G T SPATA18 Missense_Mutation p.K404N 0.10 deleterious(0) probably_damaging(0.978) TCGA-05-4398-01 4 54347885 54347885 A G LNX1 Splice_Site p.X495_splice 0.11 TCGA-05-4398-01 4 5624341 5624341 C G EVC2 Missense_Mutation p.Q808H 0.11 deleterious(0) possibly_damaging(0.907) TCGA-05-4398-01 4 57182816 57182817 - A KIAA1211 Frame_Shift_Ins p.E1051Rfs*114 0.16 TCGA-05-4398-01 4 6349667 6349667 C T PPP2R2C Silent p.P232P 0.25 TCGA-05-4398-01 4 68374577 68374577 C A CENPC Missense_Mutation p.S620I 0.21 tolerated(0.11) benign(0.396) TCGA-05-4398-01 4 68488607 68488607 C G UBA6 Missense_Mutation p.G989R 0.11 deleterious(0) probably_damaging(0.997) TCGA-05-4398-01 4 69313209 69313209 G T TMPRSS11E 5'UTR 0.13 TCGA-05-4398-01 4 71232741 71232741 C A SMR3A 3'UTR 0.25 TCGA-05-4398-01 4 75178861 75178861 T A EPGN Silent p.V127V 0.11 TCGA-05-4398-01 4 77817832 77817832 G T SOWAHB Missense_Mutation p.L391I 0.10 deleterious(0) benign(0.364) TCGA-05-4398-01 4 79393416 79393416 C G FRAS1 Missense_Mutation p.T2485R 0.22 benign(0.05) TCGA-05-4398-01 4 85678286 85678286 C A WDFY3 Silent p.G1739G 0.22 TCGA-05-4398-01 4 96761513 96761513 G A PDHA2 Missense_Mutation p.R71H 0.10 deleterious(0.04) benign(0.129) TCGA-05-4398-01 5 110820197 110820197 G A CAMK4 3'UTR 0.15 TCGA-05-4398-01 5 11199641 11199641 G T CTNND2 Missense_Mutation p.L632M 0.49 tolerated(0.41) possibly_damaging(0.903) TCGA-05-4398-01 5 11236895 11236895 G T CTNND2 Missense_Mutation p.Q557K 0.06 tolerated(0.09) benign(0.312) TCGA-05-4398-01 5 115335573 115335573 C G AQPEP Missense_Mutation p.L497V 0.28 tolerated(0.07) benign(0.35) TCGA-05-4398-01 5 127800495 127800495 G T FBN2 Missense_Mutation p.P250T 0.23 deleterious(0) probably_damaging(0.975) TCGA-05-4398-01 5 130970735 130970735 G A RAPGEF6 5'UTR 0.30 TCGA-05-4398-01 5 132100012 132100012 C A SEPT8 Missense_Mutation p.R84L 0.19 tolerated(0.06) benign(0.034) TCGA-05-4398-01 5 134126186 134126186 A T DDX46 Missense_Mutation p.T524S 0.22 deleterious(0.03) possibly_damaging(0.773) TCGA-05-4398-01 5 139908217 139908217 G T ANKHD1 Missense_Mutation p.V1896L 0.22 probably_damaging(0.978) TCGA-05-4398-01 5 140168129 140168129 C T PCDHA1 Nonsense_Mutation p.Q752* 0.25 TCGA-05-4398-01 5 140237095 140237095 C A PCDHA10 Missense_Mutation p.L488M 0.51 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-05-4398-01 5 140256759 140256759 A G PCDHA12 Missense_Mutation p.T568A 0.09 deleterious_low_confidence(0.03) benign(0.009) TCGA-05-4398-01 5 140262802 140262802 G A PCDHA13 Missense_Mutation p.E317K 0.26 tolerated_low_confidence(0.33) possibly_damaging(0.473) TCGA-05-4398-01 5 140432667 140432667 G T PCDHB1 Missense_Mutation p.G538C 0.23 deleterious(0) probably_damaging(1) TCGA-05-4398-01 5 140502399 140502399 C A PCDHB4 Missense_Mutation p.F273L 0.24 tolerated(0.48) benign(0.199) TCGA-05-4398-01 5 140530549 140530549 C A PCDHB6 Missense_Mutation p.N237K 0.15 deleterious(0) probably_damaging(0.994) TCGA-05-4398-01 5 140559495 140559495 C T PCDHB8 Missense_Mutation p.T627I 0.24 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-05-4398-01 5 140605057 140605057 G T PCDHB14 Silent p.V660V 0.09 TCGA-05-4398-01 5 140615835 140615835 C T PCDHB18 RNA 0.23 TCGA-05-4398-01 5 140625580 140625580 C G PCDHB15 Missense_Mutation p.T145S 0.17 tolerated_low_confidence(1) benign(0) TCGA-05-4398-01 5 140625593 140625593 G C PCDHB15 Silent p.G149G 0.14 TCGA-05-4398-01 5 140626431 140626431 C A PCDHB15 Missense_Mutation p.P429T 0.20 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-05-4398-01 5 140626432 140626432 C A PCDHB15 Missense_Mutation p.P429Q 0.21 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-05-4398-01 5 140856219 140856219 A G PCDHGC3 Missense_Mutation p.Y179C 0.06 deleterious(0) possibly_damaging(0.907) TCGA-05-4398-01 5 143586702 143586702 C A KCTD16 Missense_Mutation p.A142D 0.27 tolerated(0.63) benign(0.008) TCGA-05-4398-01 5 151046061 151046061 T C SPARC Missense_Mutation p.I199V 0.19 deleterious(0.01) benign(0.249) TCGA-05-4398-01 5 151784176 151784176 G T NMUR2 Missense_Mutation p.L167I 0.25 tolerated(1) benign(0.058) TCGA-05-4398-01 5 153413916 153413916 G T FAM114A2 Missense_Mutation p.P78T 0.25 tolerated(0.27) benign(0.013) TCGA-05-4398-01 5 15500716 15500716 G T FBXL7 5'UTR 0.15 TCGA-05-4398-01 5 158523984 158523984 T A EBF1 Nonsense_Mutation p.K97* 0.32 TCGA-05-4398-01 5 160029594 160029594 T C ATP10B Missense_Mutation p.Y1118C 0.09 deleterious(0) probably_damaging(0.992) TCGA-05-4398-01 5 16091000 16091000 A G MARCH11 Missense_Mutation p.I295T 0.27 deleterious(0.02) probably_damaging(0.933) TCGA-05-4398-01 5 167674040 167674040 C - TENM2 Frame_Shift_Del p.Y2033Tfs*17 0.28 TCGA-05-4398-01 5 179023586 179023586 G A RUFY1 Missense_Mutation p.R512K 0.09 tolerated(0.16) benign(0.006) TCGA-05-4398-01 5 179193482 179193482 A T MAML1 Missense_Mutation p.S491C 0.32 deleterious(0.01) possibly_damaging(0.67) TCGA-05-4398-01 5 179691800 179691800 G C MAPK9 Missense_Mutation p.L98V 0.30 deleterious(0.04) benign(0.043) TCGA-05-4398-01 5 180057260 180057260 C A FLT4 Missense_Mutation p.V160L 0.18 tolerated(0.09) possibly_damaging(0.491) TCGA-05-4398-01 5 22078828 22078828 C G CDH12 5'UTR 0.11 TCGA-05-4398-01 5 23527537 23527537 G T PRDM9 Missense_Mutation p.E780D 0.36 tolerated(0.19) unknown(0) TCGA-05-4398-01 5 24488132 24488132 G T CDH10 Silent p.A669A 0.61 TCGA-05-4398-01 5 24537495 24537495 C G CDH10 Missense_Mutation p.V174L 0.14 tolerated(0.14) benign(0.001) TCGA-05-4398-01 5 32789467 32789467 G - NPR3 3'UTR 0.11 TCGA-05-4398-01 5 33535001 33535001 C A ADAMTS12 Missense_Mutation p.D1515Y 0.09 deleterious(0) probably_damaging(0.958) TCGA-05-4398-01 5 35795874 35795874 A T SPEF2 Missense_Mutation p.N1603Y 0.08 deleterious(0) possibly_damaging(0.456) TCGA-05-4398-01 5 38523600 38523600 C T LIFR Missense_Mutation p.G161D 0.09 deleterious(0.01) probably_damaging(0.994) TCGA-05-4398-01 5 40692538 40692538 G C PTGER4 3'UTR 0.22 TCGA-05-4398-01 5 42718755 42718755 C A GHR Silent p.G382G 0.11 TCGA-05-4398-01 5 44815242 44815242 C T MRPS30 Nonsense_Mutation p.Q420* 0.11 TCGA-05-4398-01 5 55455694 55455694 G T ANKRD55 Nonsense_Mutation p.S150* 0.04 TCGA-05-4398-01 5 6620303 6620303 G A NSUN2 Missense_Mutation p.S244F 0.11 deleterious(0) probably_damaging(0.958) TCGA-05-4398-01 5 74130338 74130338 G T FAM169A Missense_Mutation p.P135T 0.36 deleterious(0) probably_damaging(0.966) TCGA-05-4398-01 5 75885525 75885525 C G IQGAP2 Silent p.A204A 0.18 TCGA-05-4398-01 5 82815951 82815966 TAATTATGCCTGATAA - VCAN Frame_Shift_Del p.I610Mfs*17 0.19 TCGA-05-4398-01 5 9629177 9629177 G T TAS2R1 3'UTR 0.34 TCGA-05-4398-01 6 105581345 105581345 G C BVES Missense_Mutation p.N36K 0.09 tolerated(0.53) benign(0.101) TCGA-05-4398-01 6 105581378 105581378 T A BVES Silent p.I25I 0.10 TCGA-05-4398-01 6 111695285 111695285 T A REV3L Missense_Mutation p.S1425C 0.10 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-05-4398-01 6 112462651 112462651 A G LAMA4 Missense_Mutation p.Y908H 0.05 deleterious(0) probably_damaging(1) TCGA-05-4398-01 6 117121902 117121902 C T GPRC6A Missense_Mutation p.D465N 0.17 tolerated(0.18) benign(0.311) TCGA-05-4398-01 6 117864321 117864321 G T DCBLD1 Silent p.V464V 0.12 TCGA-05-4398-01 6 117896421 117896422 CG A GOPC Frame_Shift_Del p.R190Lfs*4 0.11 TCGA-05-4398-01 6 129637025 129637025 G T LAMA2 Missense_Mutation p.R1285I 0.23 tolerated(0.41) benign(0.085) TCGA-05-4398-01 6 129777622 129777622 C A LAMA2 Missense_Mutation p.L2284M 0.08 tolerated(0.06) possibly_damaging(0.474) TCGA-05-4398-01 6 130465632 130465632 G A SAMD3 3'UTR 0.18 TCGA-05-4398-01 6 130465809 130465809 A T SAMD3 Missense_Mutation p.F473L 0.29 deleterious(0.01) possibly_damaging(0.538) TCGA-05-4398-01 6 130762082 130762082 C A TMEM200A Missense_Mutation p.T172K 0.09 tolerated(0.11) benign(0.018) TCGA-05-4398-01 6 131894469 131894469 C G ARG1 Nonsense_Mutation p.S16* 0.07 TCGA-05-4398-01 6 132619061 132619061 T A MOXD1 Missense_Mutation p.Q514H 0.12 tolerated(0.1) probably_damaging(0.962) TCGA-05-4398-01 6 133834083 133834083 G T EYA4 Missense_Mutation p.G470C 0.31 deleterious(0) possibly_damaging(0.781) TCGA-05-4398-01 6 139094657 139094657 G A CCDC28A 5'UTR 0.24 TCGA-05-4398-01 6 139100986 139100986 G T CCDC28A Missense_Mutation p.Q152H 0.21 tolerated(0.06) possibly_damaging(0.838) TCGA-05-4398-01 6 151413614 151413614 G T MTHFD1L Missense_Mutation p.M953I 0.24 tolerated(0.46) benign(0.052) TCGA-05-4398-01 6 152599233 152599233 G A SYNE1 Silent p.L6188L 0.07 TCGA-05-4398-01 6 152686025 152686025 C A SYNE1 Missense_Mutation p.D3368Y 0.23 possibly_damaging(0.759) TCGA-05-4398-01 6 152809592 152809592 T A SYNE1 Missense_Mutation p.Q329L 0.13 benign(0.24) TCGA-05-4398-01 6 155145395 155145395 G T SCAF8 Missense_Mutation p.V652F 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-05-4398-01 6 158571537 158571537 C - SERAC1 Frame_Shift_Del p.M71Ifs*12 0.13 TCGA-05-4398-01 6 160677683 160677683 A G SLC22A2 Missense_Mutation p.F161L 0.25 tolerated(0.89) benign(0.168) TCGA-05-4398-01 6 161139844 161139844 T A PLG Missense_Mutation p.V357E 0.06 tolerated(1) benign(0.045) TCGA-05-4398-01 6 168352255 168352255 G T MLLT4 Silent p.P1400P 0.25 TCGA-05-4398-01 6 168445706 168445706 G T KIF25 3'UTR 0.24 TCGA-05-4398-01 6 168910593 168910593 A C SMOC2 Splice_Site p.X29_splice 0.08 TCGA-05-4398-01 6 168999541 168999541 C A SMOC2 Silent p.A238A 0.18 TCGA-05-4398-01 6 170889182 170889182 C T PDCD2 Missense_Mutation p.E224K 0.07 deleterious(0.03) possibly_damaging(0.589) TCGA-05-4398-01 6 28876835 28876835 C A TRIM27 Missense_Mutation p.W267C 0.11 tolerated(0.1) possibly_damaging(0.893) TCGA-05-4398-01 6 29555777 29555777 C A OR2H2 Missense_Mutation p.P19Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-05-4398-01 6 29599302 29599302 T C GABBR1 Missense_Mutation p.I54V 0.08 tolerated_low_confidence(1) benign(0.003) TCGA-05-4398-01 6 30630700 30630700 C T DHX16 Silent p.K472K 0.07 TCGA-05-4398-01 6 31783633 31783633 G A HSPA1A Missense_Mutation p.G34S 0.09 deleterious_low_confidence(0) probably_damaging(1) TCGA-05-4398-01 6 31916238 31916238 A T CFB Missense_Mutation p.S831C 0.11 deleterious(0) probably_damaging(0.999) TCGA-05-4398-01 6 32052440 32052440 C A TNXB Silent p.L1065L 0.09 TCGA-05-4398-01 6 32168733 32168733 G A NOTCH4 Missense_Mutation p.P1397L 0.13 deleterious(0.04) possibly_damaging(0.815) TCGA-05-4398-01 6 41658482 41658482 G A TFEB Silent p.H129H 0.22 TCGA-05-4398-01 6 43023909 43023909 C A MRPL2 Missense_Mutation p.G144W 0.17 deleterious(0.01) probably_damaging(1) TCGA-05-4398-01 6 44270894 44270894 G A AARS2 Missense_Mutation p.R722W 0.17 deleterious(0) probably_damaging(0.994) TCGA-05-4398-01 6 46826211 46826211 C A GPR116 Silent p.S1143S 0.24 TCGA-05-4398-01 6 49754060 49754060 T A PGK2 Missense_Mutation p.T281S 0.10 tolerated(0.4) benign(0.201) TCGA-05-4398-01 6 51751937 51751937 C A PKHD1 Missense_Mutation p.C2368F 0.08 deleterious(0) probably_damaging(1) TCGA-05-4398-01 6 54025355 54025355 C G MLIP Silent p.L264L 0.18 TCGA-05-4398-01 6 55113470 55113470 G T HCRTR2 Missense_Mutation p.R86M 0.08 deleterious(0) probably_damaging(0.999) TCGA-05-4398-01 6 56470661 56470661 G T DST Intron 0.14 TCGA-05-4398-01 6 62611152 62611152 G A KHDRBS2 Missense_Mutation p.S203L 0.10 tolerated(0.3) benign(0.057) TCGA-05-4398-01 6 6589040 6589040 A G LY86 Missense_Mutation p.K25E 0.14 tolerated(1) benign(0) TCGA-05-4398-01 6 71571616 71571616 G A B3GAT2 Nonsense_Mutation p.Q268* 0.10 TCGA-05-4398-01 6 80745021 80745021 G T TTK Missense_Mutation p.C604F 0.12 deleterious(0) benign(0.171) TCGA-05-4398-01 6 82461348 82461348 C T FAM46A Missense_Mutation p.E171K 0.09 tolerated(0.39) benign(0.015) TCGA-05-4398-01 6 85446331 85446331 C A TBX18 3'UTR 0.23 TCGA-05-4398-01 7 100345219 100345219 C A ZAN Missense_Mutation p.N326K 0.09 possibly_damaging(0.801) TCGA-05-4398-01 7 100395410 100395410 A G ZAN 3'UTR 0.24 TCGA-05-4398-01 7 100681105 100681105 T A MUC17 Silent p.S2136S 0.22 TCGA-05-4398-01 7 100683741 100683741 G T MUC17 Missense_Mutation p.S3015I 0.04 probably_damaging(0.981) TCGA-05-4398-01 7 100732027 100732027 G C TRIM56 Silent p.L478L 0.25 TCGA-05-4398-01 7 100841620 100841620 G T MOGAT3 Missense_Mutation p.L174M 0.23 deleterious(0.02) probably_damaging(1) TCGA-05-4398-01 7 101091001 101091001 C G COL26A1 Silent p.S106S 0.16 TCGA-05-4398-01 7 102614193 102614193 A G FBXL13 Intron 0.14 TCGA-05-4398-01 7 103130329 103130329 C A RELN Missense_Mutation p.W3208L 0.21 deleterious(0) benign(0.098) TCGA-05-4398-01 7 107204325 107204325 C - COG5 Frame_Shift_Del p.G37Afs*5 0.14 TCGA-05-4398-01 7 107323753 107323753 G T SLC26A4 Missense_Mutation p.R291L 0.12 deleterious(0.01) probably_damaging(0.949) TCGA-05-4398-01 7 107408247 107408247 C T SLC26A3 Silent p.K723K 0.05 TCGA-05-4398-01 7 111638539 111638539 T A DOCK4 Missense_Mutation p.Y61F 0.33 tolerated(0.07) benign(0.084) TCGA-05-4398-01 7 120781037 120781037 A T CPED1 Missense_Mutation p.K619M 0.18 deleterious(0.01) possibly_damaging(0.87) TCGA-05-4398-01 7 120876814 120876814 C A CPED1 Missense_Mutation p.P701H 0.11 deleterious(0.01) probably_damaging(0.909) TCGA-05-4398-01 7 121637934 121637934 G T PTPRZ1 Missense_Mutation p.G372C 0.09 deleterious(0) probably_damaging(1) TCGA-05-4398-01 7 123267198 123267198 G T ASB15 Silent p.A244A 0.29 TCGA-05-4398-01 7 126173711 126173711 G T GRM8 Silent p.I575I 0.16 TCGA-05-4398-01 7 127253575 127253575 C A PAX4 Missense_Mutation p.G184W 0.36 deleterious(0.02) possibly_damaging(0.455) TCGA-05-4398-01 7 128477232 128477232 A T FLNC Missense_Mutation p.E207V 0.18 deleterious(0.01) benign(0.002) TCGA-05-4398-01 7 129067072 129067072 G T AHCYL2 3'UTR 0.40 TCGA-05-4398-01 7 129067073 129067073 G T AHCYL2 3'UTR 0.40 TCGA-05-4398-01 7 129853326 129853326 G A SSMEM1 Missense_Mutation p.E64K 0.11 tolerated(0.24) benign(0) TCGA-05-4398-01 7 130364188 130364188 A G TSGA13 Silent p.P64P 0.15 TCGA-05-4398-01 7 131870132 131870132 G C PLXNA4 Missense_Mutation p.I1028M 0.16 tolerated(0.07) possibly_damaging(0.526) TCGA-05-4398-01 7 134617840 134617840 G T CALD1 Missense_Mutation p.R107L 0.14 deleterious(0) unknown(0) TCGA-05-4398-01 7 137080403 137080403 G T DGKI Silent p.R1008R 0.18 TCGA-05-4398-01 7 137776546 137776546 C A AKR1D1 Silent p.V98V 0.31 TCGA-05-4398-01 7 141424063 141424063 G A WEE2 Silent p.E403E 0.07 TCGA-05-4398-01 7 141672473 141672473 A T TAS2R38 3'UTR 0.13 TCGA-05-4398-01 7 141805626 141805626 G C MGAM Missense_Mutation p.D1837H 0.11 tolerated(0.16) benign(0.02) TCGA-05-4398-01 7 142021194 142021194 A G TRBV5-1 Silent p.P58P 0.16 TCGA-05-4398-01 7 142045769 142045769 C A TRBV4-2 Silent p.T99T 0.09 TCGA-05-4398-01 7 142045770 142045770 C A TRBV4-2 Missense_Mutation p.L100M 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-05-4398-01 7 142206614 142206614 C T TRBV10-2 Missense_Mutation p.D81N 0.26 tolerated(0.23) benign(0.093) TCGA-05-4398-01 7 142460317 142460317 C T PRSS1 Missense_Mutation p.P164S 0.06 deleterious(0.02) benign(0.026) TCGA-05-4398-01 7 142460411 142460411 C T PRSS1 Missense_Mutation p.S195L 0.04 deleterious(0) probably_damaging(0.987) TCGA-05-4398-01 7 142829235 142829235 G T PIP Missense_Mutation p.R9M 0.13 deleterious(0.04) probably_damaging(0.98) TCGA-05-4398-01 7 143556123 143556123 C A FAM115A Nonsense_Mutation p.E767* 0.19 TCGA-05-4398-01 7 144245652 144245652 C A TPK1 Missense_Mutation p.W182L 0.12 deleterious(0) probably_damaging(0.987) TCGA-05-4398-01 7 147092811 147092811 G C CNTNAP2 Missense_Mutation p.A537P 0.11 deleterious(0) benign(0.112) TCGA-05-4398-01 7 149488389 149488389 G - SSPO Splice_Site 0.35 TCGA-05-4398-01 7 150270151 150270151 T G GIMAP4 3'UTR 0.33 TCGA-05-4398-01 7 150389421 150389421 A C GIMAP2 Missense_Mutation p.Q16P 0.13 deleterious(0.04) benign(0.03) TCGA-05-4398-01 7 150417236 150417236 G A GIMAP1 Silent p.L48L 0.32 TCGA-05-4398-01 7 154379709 154379709 G T DPP6 Intron 0.09 TCGA-05-4398-01 7 157341681 157341681 C T PTPRN2 Missense_Mutation p.E979K 0.09 deleterious(0) probably_damaging(0.98) TCGA-05-4398-01 7 157414103 157414103 G A PTPRN2 Silent p.A765A 0.15 TCGA-05-4398-01 7 157691364 157691364 C A PTPRN2 Splice_Site p.X596_splice 0.29 TCGA-05-4398-01 7 157985049 157985049 G C PTPRN2 Silent p.T173T 0.34 TCGA-05-4398-01 7 158716322 158716322 G C WDR60 Missense_Mutation p.G719R 0.33 deleterious(0) benign(0.103) TCGA-05-4398-01 7 158716323 158716323 G T WDR60 Missense_Mutation p.G719V 0.32 deleterious(0) benign(0.058) TCGA-05-4398-01 7 20666195 20666195 G T ABCB5 Missense_Mutation p.Q23H 0.15 tolerated(0.11) benign(0.005) TCGA-05-4398-01 7 20698714 20698714 C A ABCB5 Intron 0.12 TCGA-05-4398-01 7 21750234 21750234 G A DNAH11 Silent p.K2256K 0.11 TCGA-05-4398-01 7 23390963 23390963 C A IGF2BP3 Missense_Mutation p.G215V 0.27 deleterious(0.04) probably_damaging(1) TCGA-05-4398-01 7 23775440 23775440 A G STK31 Missense_Mutation p.K256R 0.09 tolerated(0.38) benign(0.225) TCGA-05-4398-01 7 2402301 2402301 G A EIF3B Silent p.A238A 0.09 TCGA-05-4398-01 7 31378156 31378156 A C NEUROD6 Missense_Mutation p.F243V 0.05 tolerated(0.16) possibly_damaging(0.849) TCGA-05-4398-01 7 31867988 31867988 C G PDE1C Splice_Site p.X462_splice 0.10 TCGA-05-4398-01 7 33384214 33384214 G A BBS9 Missense_Mutation p.G433R 0.25 tolerated(0.21) probably_damaging(0.92) TCGA-05-4398-01 7 33545228 33545228 C T BBS9 Silent p.L757L 0.06 TCGA-05-4398-01 7 34867094 34867094 A G NPSR1 Missense_Mutation p.K187R 0.05 tolerated(0.14) probably_damaging(0.917) TCGA-05-4398-01 7 36571916 36571916 C G AOAH Missense_Mutation p.L447F 0.15 tolerated(0.75) benign(0.02) TCGA-05-4398-01 7 38393411 38393411 C T TRGV4 Missense_Mutation p.D87N 0.05 tolerated(0.35) benign(0.001) TCGA-05-4398-01 7 41739824 41739824 G T INHBA Missense_Mutation p.S50Y 0.07 tolerated(0.16) benign(0.353) TCGA-05-4398-01 7 41740001 41740001 T C INHBA 5'UTR 0.30 TCGA-05-4398-01 7 44579392 44579392 A G NPC1L1 Missense_Mutation p.W202R 0.07 deleterious(0) probably_damaging(1) TCGA-05-4398-01 7 47867068 47867068 T A PKD1L1 Splice_Site p.X2246_splice 0.12 TCGA-05-4398-01 7 48563921 48563921 A C ABCA13 Missense_Mutation p.E4710A 0.09 benign(0.02) TCGA-05-4398-01 7 4917651 4917651 G A RADIL Silent p.D40D 0.21 TCGA-05-4398-01 7 590070 590070 G C PRKAR1B Silent p.V381V 0.13 TCGA-05-4398-01 7 624175 624175 C T PRKAR1B Missense_Mutation p.E247K 0.19 tolerated(0.15) benign(0.084) TCGA-05-4398-01 7 63720657 63720657 T A ZNF679 Missense_Mutation p.L33Q 0.06 deleterious(0) probably_damaging(1) TCGA-05-4398-01 7 63720698 63720698 G C ZNF679 Missense_Mutation p.E47Q 0.06 deleterious(0) probably_damaging(0.998) TCGA-05-4398-01 7 65228337 65228337 A T SNORA15 3'Flank 0.07 TCGA-05-4398-01 7 65579910 65579910 C G CRCP 5'UTR 0.09 TCGA-05-4398-01 7 66240233 66240233 G C KCTD7 Missense_Mutation p.E67Q 0.07 tolerated(0.24) benign(0.265) TCGA-05-4398-01 7 66760680 66760680 C A Y_RNA 3'Flank 0.17 TCGA-05-4398-01 7 7420475 7420475 C A COL28A1 Missense_Mutation p.G742C 0.12 deleterious(0) probably_damaging(0.987) TCGA-05-4398-01 7 76019533 76019533 C G SRCRB4D Missense_Mutation p.G524A 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-05-4398-01 7 82474669 82474669 G T PCLO Missense_Mutation p.T4655K 0.06 unknown(0) TCGA-05-4398-01 7 83036465 83036465 T A SEMA3E Missense_Mutation p.E254V 0.30 deleterious(0) probably_damaging(0.947) TCGA-05-4398-01 7 8475303 8475303 C A NXPH1 5'UTR 0.08 TCGA-05-4398-01 7 86416434 86416434 T G GRM3 Splice_Site p.X442_splice 0.06 TCGA-05-4398-01 7 87195392 87195392 C A ABCB1 Missense_Mutation p.W232C 0.08 tolerated(0.32) possibly_damaging(0.731) TCGA-05-4398-01 7 91641910 91641910 G T AKAP9 Missense_Mutation p.Q1162H 0.13 benign(0.014) TCGA-05-4398-01 7 91667800 91667800 A G AKAP9 Missense_Mutation p.E1469G 0.07 benign(0.001) TCGA-05-4398-01 7 92118631 92118631 T C PEX1 Missense_Mutation p.D1248G 0.08 deleterious(0.01) possibly_damaging(0.69) TCGA-05-4398-01 7 92732395 92732395 G T SAMD9 Missense_Mutation p.Q1006K 0.08 tolerated(0.22) benign(0.001) TCGA-05-4398-01 7 92732470 92732470 C A SAMD9 Missense_Mutation p.V981L 0.22 tolerated(0.33) benign(0.065) TCGA-05-4398-01 7 94539978 94539978 A G PPP1R9A Missense_Mutation p.T185A 0.05 deleterious(0) possibly_damaging(0.511) TCGA-05-4398-01 7 99332708 99332708 G A CYP3A7 Silent p.L3L 0.05 TCGA-05-4398-01 8 101178126 101178126 G A SPAG1 Silent p.L75L 0.11 TCGA-05-4398-01 8 104225192 104225192 C A BAALC Missense_Mutation p.T69K 0.18 tolerated(0.07) benign(0.116) TCGA-05-4398-01 8 10473975 10473975 C A RP1L1 Silent p.L244L 0.22 TCGA-05-4398-01 8 10473976 10473976 A G RP1L1 Missense_Mutation p.L244P 0.22 benign(0.132) TCGA-05-4398-01 8 105507492 105507492 C T LRP12 Intron 0.13 TCGA-05-4398-01 8 105510050 105510051 - A LRP12 Frame_Shift_Ins p.D244* 0.11 TCGA-05-4398-01 8 106801053 106801053 C T ZFPM2 Missense_Mutation p.L214F 0.11 tolerated(0.27) benign(0.019) TCGA-05-4398-01 8 108972928 108972928 G T RSPO2 Missense_Mutation p.P134Q 0.35 deleterious(0.01) possibly_damaging(0.757) TCGA-05-4398-01 8 110432808 110432808 G C PKHD1L1 Missense_Mutation p.Q862H 0.10 tolerated(0.09) benign(0.428) TCGA-05-4398-01 8 110476838 110476838 G C PKHD1L1 Missense_Mutation p.D2593H 0.10 deleterious(0) probably_damaging(0.997) TCGA-05-4398-01 8 110984554 110984554 C A KCNV1 Silent p.G308G 0.58 TCGA-05-4398-01 8 113420618 113420618 C A CSMD3 Missense_Mutation p.G1845V 0.13 deleterious(0.01) probably_damaging(0.944) TCGA-05-4398-01 8 11995480 11995480 A T USP17L2 Missense_Mutation p.S264T 0.06 tolerated(0.27) benign(0.248) TCGA-05-4398-01 8 120631544 120631544 C T ENPP2 Missense_Mutation p.G140E 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-05-4398-01 8 121209165 121209165 G T COL14A1 Missense_Mutation p.G191V 0.27 tolerated(0.06) possibly_damaging(0.904) TCGA-05-4398-01 8 121216051 121216051 G T COL14A1 Silent p.V327V 0.34 TCGA-05-4398-01 8 124132400 124132400 C T TBC1D31 Silent p.I514I 0.40 TCGA-05-4398-01 8 125463762 125463762 G T TRMT12 Missense_Mutation p.W198C 0.18 deleterious(0) probably_damaging(0.998) TCGA-05-4398-01 8 131792968 131792968 C A ADCY8 Missense_Mutation p.D1142Y 0.06 deleterious(0.01) benign(0.011) TCGA-05-4398-01 8 132958799 132958799 A G EFR3A Silent p.P95P 0.21 TCGA-05-4398-01 8 133823337 133823337 G T PHF20L1 Missense_Mutation p.K298N 0.06 deleterious_low_confidence(0) possibly_damaging(0.799) TCGA-05-4398-01 8 135669873 135669874 - A ZFAT Frame_Shift_Ins p.D43* 0.11 TCGA-05-4398-01 8 139151289 139151289 T A FAM135B Missense_Mutation p.T1281S 0.09 deleterious(0.02) possibly_damaging(0.475) TCGA-05-4398-01 8 143782017 143782017 A T LY6K Missense_Mutation p.R24S 0.41 tolerated(0.28) benign(0.065) TCGA-05-4398-01 8 143994820 143994820 G T CYP11B2 Silent p.P334P 0.54 TCGA-05-4398-01 8 143995724 143995724 T A CYP11B2 Missense_Mutation p.I304F 0.33 deleterious(0) possibly_damaging(0.904) TCGA-05-4398-01 8 143995725 143995725 G T CYP11B2 Silent p.A303A 0.33 TCGA-05-4398-01 8 145095317 145095317 C A SPATC1 Missense_Mutation p.T240N 0.67 tolerated(0.07) benign(0.001) TCGA-05-4398-01 8 22429318 22429318 C T SORBS3 Nonsense_Mutation p.Q611* 0.11 TCGA-05-4398-01 8 24193068 24193068 G T ADAM28 Missense_Mutation p.G494V 0.28 deleterious(0) probably_damaging(1) TCGA-05-4398-01 8 26212038 26212038 A G PPP2R2A Missense_Mutation p.S89G 0.13 deleterious(0) possibly_damaging(0.576) TCGA-05-4398-01 8 28654167 28654167 C T INTS9 Missense_Mutation p.M250I 0.12 tolerated(0.49) benign(0.001) TCGA-05-4398-01 8 37728847 37728856 GTCTCCGAGG - RAB11FIP1 Frame_Shift_Del p.P1155Hfs*22 0.17 TCGA-05-4398-01 8 38272335 38272335 C T FGFR1 Missense_Mutation p.D678N 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-05-4398-01 8 39624743 39624743 A T ADAM2 Missense_Mutation p.C414S 0.22 deleterious(0) probably_damaging(0.996) TCGA-05-4398-01 8 52384753 52384753 T G PXDNL Missense_Mutation p.H269P 0.13 deleterious(0.03) probably_damaging(0.961) TCGA-05-4398-01 8 6360598 6360598 A T ANGPT2 3'UTR 0.14 TCGA-05-4398-01 8 66989047 66989047 C A DNAJC5B Missense_Mutation p.A91D 0.22 deleterious(0.01) probably_damaging(0.918) TCGA-05-4398-01 8 66989048 66989048 C A DNAJC5B Silent p.A91A 0.22 TCGA-05-4398-01 8 68346330 68346330 C A CPA6 Missense_Mutation p.Q328H 0.07 deleterious(0) probably_damaging(1) TCGA-05-4398-01 8 77764324 77764324 C A ZFHX4 Missense_Mutation p.P1723T 0.16 possibly_damaging(0.803) TCGA-05-4398-01 8 80976781 80976781 C A TPD52 Missense_Mutation p.A63S 0.07 tolerated(0.15) possibly_damaging(0.648) TCGA-05-4398-01 8 86171659 86171659 G T CA13 Missense_Mutation p.G82V 0.07 deleterious(0) probably_damaging(0.986) TCGA-05-4398-01 8 87229801 87229801 C A SLC7A13 Missense_Mutation p.L359F 0.24 deleterious(0) probably_damaging(0.999) TCGA-05-4398-01 8 88365868 88365868 G T CNBD1 Missense_Mutation p.R386I 0.10 deleterious(0) benign(0.379) TCGA-05-4398-01 8 89180030 89180030 G T MMP16 Missense_Mutation p.H193N 0.08 deleterious(0) probably_damaging(1) TCGA-05-4398-01 8 89198828 89198828 C T MMP16 Splice_Site p.X94_splice 0.19 TCGA-05-4398-01 8 94811942 94811942 T C TMEM67 Missense_Mutation p.Y733H 0.07 deleterious(0) probably_damaging(0.972) TCGA-05-4398-01 8 95164334 95164334 C G CDH17 Missense_Mutation p.D520H 0.09 deleterious(0) probably_damaging(1) TCGA-05-4398-01 8 95189928 95189928 C G CDH17 Missense_Mutation p.V58L 0.26 deleterious(0.02) benign(0.052) TCGA-05-4398-01 9 104432860 104432860 G T GRIN3A Missense_Mutation p.H612N 0.51 deleterious(0.01) benign(0.293) TCGA-05-4398-01 9 105765459 105765459 C T CYLC2 Missense_Mutation p.H32Y 0.16 tolerated(0.4) possibly_damaging(0.58) TCGA-05-4398-01 9 111701527 111701527 G C FAM206A Missense_Mutation p.D105H 0.29 deleterious(0) probably_damaging(0.988) TCGA-05-4398-01 9 120476798 120476798 G T TLR4 Nonsense_Mutation p.E798* 0.15 TCGA-05-4398-01 9 125141116 125141116 G T PTGS1 Nonsense_Mutation p.E139* 0.53 TCGA-05-4398-01 9 131020133 131020133 C G GOLGA2 Silent p.L822L 0.09 TCGA-05-4398-01 9 131479051 131479051 G C PKN3 Missense_Mutation p.E612Q 0.10 tolerated(0.06) benign(0.061) TCGA-05-4398-01 9 133967067 133967067 C A LAMC3 Missense_Mutation p.L1541M 0.65 tolerated(0.1) possibly_damaging(0.73) TCGA-05-4398-01 9 135940545 135940545 C T CEL Silent p.R156R 0.18 TCGA-05-4398-01 9 136198874 136198874 C T SURF6 Missense_Mutation p.R306Q 0.30 tolerated(0.95) possibly_damaging(0.553) TCGA-05-4398-01 9 137801797 137801797 T A FCN1 Silent p.G276G 0.11 TCGA-05-4398-01 9 140075363 140075363 C A ANAPC2 Missense_Mutation p.R496L 0.62 deleterious(0) possibly_damaging(0.862) TCGA-05-4398-01 9 140075364 140075364 G A ANAPC2 Missense_Mutation p.R496W 0.63 deleterious(0) probably_damaging(0.985) TCGA-05-4398-01 9 14797585 14797585 T A FREM1 Silent p.T1250T 0.51 TCGA-05-4398-01 9 16419108 16419108 C T BNC2 Missense_Mutation p.R1060K 0.10 tolerated(0.21) probably_damaging(0.97) TCGA-05-4398-01 9 21077760 21077760 G T IFNB1 Missense_Mutation p.Q37K 0.57 tolerated(0.62) benign(0.009) TCGA-05-4398-01 9 33468330 33468330 T A NOL6 Missense_Mutation p.T433S 0.12 tolerated(0.08) possibly_damaging(0.714) TCGA-05-4398-01 9 33927878 33927878 T C UBAP2 Missense_Mutation p.N763S 0.09 tolerated(1) unknown(0) TCGA-05-4398-01 9 43625488 43625488 C A SPATA31A6 Nonsense_Mutation p.E1067* 0.46 TCGA-05-4398-01 9 69205514 69205514 C T CBWD6 Missense_Mutation p.E342K 0.22 deleterious(0.01) possibly_damaging(0.845) TCGA-05-4398-01 9 72965329 72965329 T G SMC5 Missense_Mutation p.M1036R 0.09 deleterious(0) probably_damaging(0.943) TCGA-05-4398-01 9 77257434 77257434 G T RORB Nonsense_Mutation p.E114* 0.46 TCGA-05-4398-01 9 77376931 77376931 C T TRPM6 Silent p.K1552K 0.21 TCGA-05-4398-01 9 79118035 79118035 G A GCNT1 Silent p.R246R 0.12 TCGA-05-4398-01 9 79465437 79465437 G C PRUNE2 Missense_Mutation p.Q96E 0.55 tolerated(0.06) benign(0.015) TCGA-05-4398-01 9 84531559 84531559 G T SPATA31D5P RNA 0.50 TCGA-05-4398-01 9 84607685 84607685 A G SPATA31D1 Missense_Mutation p.E767G 0.49 deleterious(0) benign(0.261) TCGA-05-4398-01 9 86912205 86912205 C T SLC28A3 Silent p.L264L 0.12 TCGA-05-4398-01 9 89771610 89771610 T C C9orf170 Silent p.T97T 0.18 TCGA-05-4398-01 9 95841860 95841860 C T SUSD3 Missense_Mutation p.A178V 0.27 tolerated(0.1) benign(0.081) TCGA-05-4398-01 X 100656609 100656609 T C RPL36A-HNRNPH2 Intron 0.23 TCGA-05-4398-01 X 100699055 100699055 A G RP1-164F3.8 RNA 0.12 TCGA-05-4398-01 X 101969999 101969999 G C GPRASP2 Missense_Mutation p.A68P 0.36 deleterious(0.03) benign(0.053) TCGA-05-4398-01 X 109695410 109695410 C A RGAG1 Missense_Mutation p.T522K 0.09 tolerated(0.06) benign(0.133) TCGA-05-4398-01 X 118716549 118716549 A T UBE2A Splice_Site p.X81_splice 0.33 TCGA-05-4398-01 X 123517813 123517813 G A TENM1 Missense_Mutation p.A2323V 0.28 tolerated(0.06) possibly_damaging(0.667) TCGA-05-4398-01 X 12904107 12904107 C T TLR7 Silent p.I160I 0.24 TCGA-05-4398-01 X 13061929 13061929 C T FAM9C 5'UTR 0.33 TCGA-05-4398-01 X 135084373 135084373 G T SLC9A6 Splice_Site p.X300_splice 0.30 TCGA-05-4398-01 X 135825841 135825841 G T ARHGEF6 Nonsense_Mutation p.Y188* 0.33 TCGA-05-4398-01 X 138612921 138612921 G T F9 5'UTR 0.42 TCGA-05-4398-01 X 142718399 142718399 G A SLITRK4 Nonsense_Mutation p.R176* 0.17 TCGA-05-4398-01 X 147919180 147919180 C A AFF2 Missense_Mutation p.H366N 0.18 deleterious(0.02) benign(0.162) TCGA-05-4398-01 X 153039513 153039513 G T PLXNB3 Missense_Mutation p.R1183L 0.30 tolerated(0.15) benign(0.246) TCGA-05-4398-01 X 16170416 16170416 T A GRPR Missense_Mutation p.V268E 0.28 deleterious(0) probably_damaging(1) TCGA-05-4398-01 X 18192350 18192350 G A BEND2 Missense_Mutation p.T594I 0.11 tolerated(0.07) benign(0.103) TCGA-05-4398-01 X 3248372 3248372 C A MXRA5 Silent p.L132L 0.22 TCGA-05-4398-01 X 32662374 32662374 C A DMD Missense_Mutation p.L402F 0.25 probably_damaging(0.943) TCGA-05-4398-01 X 34961437 34961437 G T FAM47B Missense_Mutation p.W163C 0.15 tolerated(0.12) benign(0.004) TCGA-05-4398-01 X 36163104 36163104 G A CHDC2 3'UTR 0.38 TCGA-05-4398-01 X 37027551 37027551 G A FAM47C Silent p.P356P 0.17 TCGA-05-4398-01 X 38280369 38280369 C T OTC 3'UTR 0.21 TCGA-05-4398-01 X 48458941 48458941 G T WDR13 Missense_Mutation p.R253L 0.36 deleterious(0) possibly_damaging(0.741) TCGA-05-4398-01 X 49035627 49035627 C T PRICKLE3 Silent p.V179V 0.26 TCGA-05-4398-01 X 49957633 49957633 A G AKAP4 Silent p.Y577Y 0.36 TCGA-05-4398-01 X 53576030 53576030 G A HUWE1 Missense_Mutation p.R3309C 0.14 possibly_damaging(0.689) TCGA-05-4398-01 X 54954144 54954144 A G TRO Missense_Mutation p.Y603C 0.30 deleterious(0) unknown(0) TCGA-05-4398-01 X 55514858 55514858 C A USP51 Missense_Mutation p.G172V 0.14 tolerated_low_confidence(0.28) benign(0.005) TCGA-05-4398-01 X 5821357 5821357 C G NLGN4X Silent p.V454V 0.31 TCGA-05-4398-01 X 63406053 63406053 T C AMER1 3'UTR 0.30 TCGA-05-4398-01 X 65409587 65409587 G T HEPH Silent p.V344V 0.26 TCGA-05-4398-01 X 65423337 65423337 A G HEPH Missense_Mutation p.I791V 0.10 tolerated(0.07) benign(0.019) TCGA-05-4398-01 X 69502146 69502146 C A RAB41 Missense_Mutation p.Q27K 0.20 tolerated(0.67) benign(0.01) TCGA-05-4398-01 X 75649135 75649135 C T MAGEE1 Missense_Mutation p.S271F 0.23 tolerated_low_confidence(0.12) probably_damaging(0.99) TCGA-05-4398-01 X 84563165 84563165 G T POF1B Silent p.R339R 0.15 TCGA-05-4398-01 X 89177383 89177383 G - TGIF2LX Frame_Shift_Del p.W100Cfs*87 0.12 TCGA-05-4402-01 10 105796299 105796299 C T COL17A1 Silent p.L1123L 0.20 TCGA-05-4402-01 10 105926410 105926410 C T WDR96 Missense_Mutation p.D959N 0.04 tolerated(0.09) possibly_damaging(0.568) TCGA-05-4402-01 10 112724821 112724821 T A SHOC2 Splice_Site p.X235_splice 0.40 TCGA-05-4402-01 10 131973145 131973145 C T GLRX3 Missense_Mutation p.T280I 0.10 deleterious(0.04) benign(0.319) TCGA-05-4402-01 10 135233655 135233655 G C MTG1 Missense_Mutation p.E331Q 0.09 tolerated_low_confidence(0.07) benign(0.075) TCGA-05-4402-01 10 94828109 94828109 G A CYP26C1 Missense_Mutation p.M408I 0.08 tolerated(0.35) possibly_damaging(0.881) TCGA-05-4402-01 11 120322385 120322385 G C ARHGEF12 Missense_Mutation p.A670P 0.12 tolerated(0.15) benign(0.158) TCGA-05-4402-01 11 130011390 130011390 C G APLP2 Intron 0.28 TCGA-05-4402-01 11 18048086 18048086 A G TPH1 Missense_Mutation p.C252R 0.07 deleterious(0) probably_damaging(0.999) TCGA-05-4402-01 11 18354719 18354719 G A GTF2H1 Nonsense_Mutation p.W33* 0.04 TCGA-05-4402-01 11 1862710 1862710 G T TNNI2 Missense_Mutation p.D160Y 0.05 deleterious(0) probably_damaging(0.998) TCGA-05-4402-01 11 27016133 27016133 C T FIBIN Silent p.F20F 0.11 TCGA-05-4402-01 11 4661548 4661548 C G OR51D1 Silent p.L176L 0.07 TCGA-05-4402-01 11 47362583 47362583 T C MYBPC3 Missense_Mutation p.E633G 0.20 tolerated(0.08) probably_damaging(0.983) TCGA-05-4402-01 11 57144338 57144338 G T PRG3 Missense_Mutation p.F221L 0.06 deleterious(0) probably_damaging(1) TCGA-05-4402-01 11 57156549 57156549 G A PRG2 Silent p.G100G 0.07 TCGA-05-4402-01 11 62760896 62760896 C T SLC22A8 Nonsense_Mutation p.W510* 0.08 TCGA-05-4402-01 11 65272006 65272006 G T MALAT1 RNA 0.06 TCGA-05-4402-01 11 6623441 6623441 G C RRP8 Missense_Mutation p.S35C 0.04 deleterious_low_confidence(0.01) possibly_damaging(0.625) TCGA-05-4402-01 11 88911903 88911903 A C TYR Missense_Mutation p.N261T 0.14 tolerated(0.36) possibly_damaging(0.595) TCGA-05-4402-01 12 109680251 109680251 C A ACACB Missense_Mutation p.H1678N 0.06 tolerated(0.12) benign(0.008) TCGA-05-4402-01 12 112230500 112230500 G A ALDH2 Missense_Mutation p.D333N 0.13 tolerated(0.06) benign(0.01) TCGA-05-4402-01 12 12037505 12037506 TG - ETV6 Frame_Shift_Del p.W380Gfs*4 0.08 TCGA-05-4402-01 12 126138200 126138200 C T TMEM132B Silent p.V727V 0.28 TCGA-05-4402-01 12 55945365 55945365 G C OR6C4 Missense_Mutation p.D119H 0.04 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-05-4402-01 12 56862988 56862988 C G SPRYD4 Missense_Mutation p.T84S 0.05 tolerated(0.87) benign(0.002) TCGA-05-4402-01 12 57594926 57594926 G A LRP1 Silent p.E3445E 0.06 TCGA-05-4402-01 12 57927771 57927771 G A DCTN2 Missense_Mutation p.R217W 0.08 deleterious(0) probably_damaging(0.999) TCGA-05-4402-01 12 57928219 57928219 G A DCTN2 Missense_Mutation p.S132L 0.10 deleterious(0.04) benign(0.156) TCGA-05-4402-01 12 6424195 6424195 G A PLEKHG6 Missense_Mutation p.E107K 0.05 tolerated(0.06) benign(0.009) TCGA-05-4402-01 12 68642540 68642540 G T IL22 3'UTR 0.12 TCGA-05-4402-01 12 9232408 9232408 T C A2M Missense_Mutation p.D953G 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-05-4402-01 12 98941397 98941397 G A TMPO Missense_Mutation p.E267K 0.09 tolerated(0.69) probably_damaging(0.952) TCGA-05-4402-01 13 24200845 24200845 G C TNFRSF19 Splice_Site p.X120_splice 0.12 TCGA-05-4402-01 13 25284699 25284699 G C ATP12A Silent p.R961R 0.10 TCGA-05-4402-01 13 38357157 38357157 C G TRPC4 Missense_Mutation p.R105T 0.08 tolerated(0.06) possibly_damaging(0.885) TCGA-05-4402-01 14 31602521 31602521 C T HECTD1 Missense_Mutation p.R1282K 0.13 deleterious(0) probably_damaging(0.996) TCGA-05-4402-01 14 55312565 55312565 C G GCH1 Missense_Mutation p.E183Q 0.06 deleterious(0.03) probably_damaging(1) TCGA-05-4402-01 14 69697274 69697274 C G EXD2 Missense_Mutation p.R226G 0.09 deleterious(0.04) probably_damaging(0.998) TCGA-05-4402-01 14 95058516 95058516 C A SERPINA5 Silent p.P387P 0.14 TCGA-05-4402-01 15 28260068 28260068 C A OCA2 Missense_Mutation p.V300L 0.30 tolerated(0.14) benign(0.003) TCGA-05-4402-01 15 52645805 52645805 G C MYO5A Silent p.L1206L 0.05 TCGA-05-4402-01 16 18555015 18555015 G C NOMO2 Missense_Mutation p.S220C 0.09 deleterious(0.03) possibly_damaging(0.598) TCGA-05-4402-01 16 71713353 71713353 C T PHLPP2 Missense_Mutation p.E326K 0.09 deleterious(0) probably_damaging(0.998) TCGA-05-4402-01 17 17948480 17948480 C G GID4 Missense_Mutation p.S153C 0.07 deleterious(0.01) benign(0.289) TCGA-05-4402-01 17 19641686 19641686 G C ALDH3A1 Missense_Mutation p.L433V 0.16 deleterious(0.04) possibly_damaging(0.474) TCGA-05-4402-01 17 61843460 61843460 C A CCDC47 Nonsense_Mutation p.E26* 0.08 TCGA-05-4402-01 17 7578397 7578412 TGGGGGCAGCGCCTCA - TP53 Frame_Shift_Del p.V173Afs*69 0.26 TCGA-05-4402-01 17 79168681 79168681 A G AZI1 Missense_Mutation p.V703A 0.08 tolerated(0.07) benign(0.001) TCGA-05-4402-01 18 28712647 28712647 G A DSC1 Silent p.L708L 0.18 TCGA-05-4402-01 18 33775270 33775270 C T MOCOS Missense_Mutation p.L65F 0.10 deleterious(0) probably_damaging(0.968) TCGA-05-4402-01 18 59483267 59483267 C T RNF152 Missense_Mutation p.G144S 0.05 tolerated(0.91) benign(0.023) TCGA-05-4402-01 19 22941400 22941400 G A ZNF99 Silent p.F437F 0.12 TCGA-05-4402-01 19 30936293 30936293 G A ZNF536 Silent p.L608L 0.13 TCGA-05-4402-01 19 36501474 36501474 C T ALKBH6 Missense_Mutation p.E178K 0.07 tolerated(0.36) benign(0.311) TCGA-05-4402-01 19 56424091 56424091 C G NLRP13 Missense_Mutation p.K364N 0.12 deleterious(0.01) possibly_damaging(0.551) TCGA-05-4402-01 19 9057667 9057667 G A MUC16 Nonsense_Mutation p.Q9927* 0.05 TCGA-05-4402-01 1 111434033 111434033 G A CD53 Translation_Start_Site p.M1? 0.05 deleterious(0) probably_damaging(0.998) TCGA-05-4402-01 1 114483059 114483059 C G HIPK1 Missense_Mutation p.F18L 0.06 deleterious(0.02) unknown(0) TCGA-05-4402-01 1 115273174 115273174 C T CSDE1 Silent p.G428G 0.05 TCGA-05-4402-01 1 153745528 153745528 G A INTS3 Missense_Mutation p.E1008K 0.12 tolerated(0.43) probably_damaging(0.956) TCGA-05-4402-01 1 155029447 155029447 C T ADAM15 Silent p.L340L 0.10 TCGA-05-4402-01 1 155207965 155207965 C T GBA Missense_Mutation p.G241R 0.09 deleterious(0.04) benign(0.122) TCGA-05-4402-01 1 158587342 158587342 C A SPTA1 Missense_Mutation p.Q2195H 0.14 deleterious(0) probably_damaging(0.946) TCGA-05-4402-01 1 159683874 159683874 G A CRP Missense_Mutation p.S39F 0.05 tolerated(0.09) benign(0.135) TCGA-05-4402-01 1 162381712 162381712 T C SH2D1B Missense_Mutation p.D32G 0.11 deleterious(0) probably_damaging(0.926) TCGA-05-4402-01 1 171511180 171511180 A G PRRC2C Silent p.T1523T 0.11 TCGA-05-4402-01 1 183208591 183208591 G C LAMC2 Missense_Mutation p.D988H 0.11 deleterious(0.01) possibly_damaging(0.738) TCGA-05-4402-01 1 19401370 19401370 C A UBR4 Missense_Mutation p.D5170Y 0.11 possibly_damaging(0.599) TCGA-05-4402-01 1 200972738 200972738 C T KIF21B Silent p.Q396Q 0.13 TCGA-05-4402-01 1 214568247 214568247 G A PTPN14 Missense_Mutation p.H281Y 0.05 deleterious(0) probably_damaging(0.919) TCGA-05-4402-01 1 214568286 214568286 G A PTPN14 Silent p.L268L 0.06 TCGA-05-4402-01 1 236647288 236647288 G C EDARADD 3'Flank 0.14 TCGA-05-4402-01 1 38048524 38048524 G C GNL2 Nonsense_Mutation p.S217* 0.06 TCGA-05-4402-01 1 42744180 42744180 C G FOXJ3 Missense_Mutation p.E70Q 0.06 deleterious(0.01) probably_damaging(0.973) TCGA-05-4402-01 1 43215957 43215957 G A LEPRE1 Silent p.N540N 0.09 TCGA-05-4402-01 1 53676597 53676597 C T CPT2 Silent p.F417F 0.09 TCGA-05-4402-01 1 82456080 82456080 T C LPHN2 Missense_Mutation p.S1155P 0.05 tolerated(0.21) benign(0.056) TCGA-05-4402-01 1 94639514 94639514 G C ARHGAP29 Missense_Mutation p.P1233A 0.05 tolerated_low_confidence(0.22) probably_damaging(0.997) TCGA-05-4402-01 20 33722746 33722746 T A EDEM2 Missense_Mutation p.Q166L 0.22 deleterious(0) benign(0.216) TCGA-05-4402-01 22 35802587 35802587 C T MCM5 Silent p.I155I 0.08 TCGA-05-4402-01 22 36737460 36737460 G C MYH9 Missense_Mutation p.H149D 0.07 probably_damaging(1) TCGA-05-4402-01 22 47274580 47274580 C G TBC1D22A Missense_Mutation p.I223M 0.03 deleterious(0) possibly_damaging(0.69) TCGA-05-4402-01 2 143642955 143642955 G C KYNU Missense_Mutation p.E7Q 0.08 tolerated_low_confidence(0.2) benign(0.015) TCGA-05-4402-01 2 175268854 175268854 C T SCRN3 Nonsense_Mutation p.Q189* 0.06 TCGA-05-4402-01 2 193059202 193059202 C T TMEFF2 Missense_Mutation p.E17K 0.11 tolerated_low_confidence(0.64) benign(0.006) TCGA-05-4402-01 2 197106927 197106927 A G HECW2 Silent p.G1177G 0.19 TCGA-05-4402-01 2 197531497 197531497 C G CCDC150 Missense_Mutation p.Q273E 0.16 deleterious(0.01) possibly_damaging(0.868) TCGA-05-4402-01 2 20403660 20403660 C G SDC1 Missense_Mutation p.E181Q 0.20 tolerated(0.19) benign(0.302) TCGA-05-4402-01 2 239170885 239170885 G A PER2 Silent p.I418I 0.05 TCGA-05-4402-01 2 27352658 27352658 G C ABHD1 Missense_Mutation p.Q218H 0.18 tolerated(0.18) benign(0.035) TCGA-05-4402-01 2 96956196 96956196 G A SNRNP200 Silent p.I870I 0.08 TCGA-05-4402-01 2 96956427 96956427 G A SNRNP200 Silent p.L850L 0.07 TCGA-05-4402-01 3 113378190 113378190 G A KIAA2018 Missense_Mutation p.S780L 0.08 benign(0.002) TCGA-05-4402-01 3 142255000 142255000 C G ATR Missense_Mutation p.D1257H 0.09 deleterious(0) probably_damaging(0.919) TCGA-05-4402-01 3 155571730 155571730 G A SLC33A1 Silent p.F19F 0.13 TCGA-05-4402-01 3 167510457 167510457 G T SERPINI1 Missense_Mutation p.K187N 0.04 deleterious(0) probably_damaging(0.984) TCGA-05-4402-01 3 169485492 169485492 C T ACTRT3 Missense_Mutation p.D283N 0.06 deleterious(0.01) benign(0.038) TCGA-05-4402-01 3 197581296 197581296 G A LRCH3 Missense_Mutation p.D542N 0.17 tolerated(0.13) probably_damaging(0.967) TCGA-05-4402-01 3 38151719 38151719 C G DLEC1 Silent p.L1130L 0.08 TCGA-05-4402-01 3 53785859 53785859 C G CACNA1D Nonsense_Mutation p.Y1220* 0.08 TCGA-05-4402-01 4 102839186 102839186 G T BANK1 Missense_Mutation p.C349F 0.27 tolerated(0.06) probably_damaging(0.997) TCGA-05-4402-01 4 42457409 42457409 G C ATP8A1 Missense_Mutation p.L908V 0.05 deleterious(0.03) benign(0.003) TCGA-05-4402-01 4 68484822 68484822 C - UBA6 Frame_Shift_Del p.E1018Kfs*26 0.08 TCGA-05-4402-01 4 68812269 68812269 C T TMPRSS11A Missense_Mutation p.R11Q 0.09 tolerated(0.22) benign(0.002) TCGA-05-4402-01 5 101595922 101595922 G C SLCO4C1 Missense_Mutation p.L375V 0.17 tolerated(0.41) benign(0.12) TCGA-05-4402-01 5 101755593 101755593 A T SLCO6A1 Missense_Mutation p.V470E 0.17 tolerated(0.11) possibly_damaging(0.485) TCGA-05-4402-01 5 112175532 112175533 - A APC Frame_Shift_Ins p.S1415Kfs*8 0.18 TCGA-05-4402-01 5 140012043 140012043 T G CD14 Missense_Mutation p.S176R 0.18 tolerated(0.32) benign(0.011) TCGA-05-4402-01 5 140022504 140022504 C G TMCO6 Intron 0.08 TCGA-05-4402-01 5 140890710 140890710 G C PCDHGB6 Missense_Mutation p.K921N 0.09 deleterious_low_confidence(0) benign(0.007) TCGA-05-4402-01 5 16701570 16701570 C T MYO10 Silent p.E978E 0.09 TCGA-05-4402-01 5 173531304 173531304 C G NSG2 Missense_Mutation p.T96S 0.19 tolerated(0.14) possibly_damaging(0.526) TCGA-05-4402-01 5 176026184 176026184 C G GPRIN1 Missense_Mutation p.D218H 0.08 deleterious(0) probably_damaging(0.925) TCGA-05-4402-01 5 178359365 178359365 G A ZFP2 Missense_Mutation p.E351K 0.08 deleterious(0.01) probably_damaging(0.996) TCGA-05-4402-01 5 251536 251536 G C SDHA Missense_Mutation p.E583Q 0.05 deleterious_low_confidence(0.05) benign(0.315) TCGA-05-4402-01 5 31317488 31317488 C G CDH6 Missense_Mutation p.Q507E 0.11 tolerated(0.06) benign(0.098) TCGA-05-4402-01 5 57753340 57753340 C T PLK2 Missense_Mutation p.D262N 0.10 deleterious(0) probably_damaging(0.998) TCGA-05-4402-01 5 64867882 64867882 G A PPWD1 Missense_Mutation p.M246I 0.04 tolerated(0.3) benign(0.017) TCGA-05-4402-01 5 65288649 65288649 G C ERBB2IP Missense_Mutation p.E35Q 0.05 tolerated(0.64) probably_damaging(0.998) TCGA-05-4402-01 5 66460707 66460707 G A MAST4 Silent p.R1900R 0.09 TCGA-05-4402-01 5 66480332 66480332 C G CD180 Silent p.L113L 0.09 TCGA-05-4402-01 5 73931322 73931322 C G ENC1 Missense_Mutation p.R330T 0.03 deleterious(0.05) probably_damaging(0.991) TCGA-05-4402-01 5 76028674 76028674 G A F2R Missense_Mutation p.M208I 0.12 tolerated(0.88) benign(0.003) TCGA-05-4402-01 6 10707679 10707679 G C PAK1IP1 Missense_Mutation p.E258Q 0.05 tolerated(0.17) possibly_damaging(0.648) TCGA-05-4402-01 6 27805723 27805723 C T HIST1H2AK 3'UTR 0.09 TCGA-05-4402-01 6 51720762 51720762 T C PKHD1 Missense_Mutation p.M2614V 0.15 deleterious(0.04) probably_damaging(0.995) TCGA-05-4402-01 6 62688017 62688017 G A KHDRBS2 Missense_Mutation p.S146L 0.09 tolerated(0.32) possibly_damaging(0.906) TCGA-05-4402-01 7 100682517 100682517 C T MUC17 Missense_Mutation p.T2607I 0.16 benign(0.031) TCGA-05-4402-01 7 100877591 100877591 G A CLDN15 Missense_Mutation p.A117V 0.27 deleterious(0.02) benign(0.382) TCGA-05-4402-01 7 1197891 1197891 C T ZFAND2A Intron 0.03 TCGA-05-4402-01 7 122338652 122338652 C A RNF133 Silent p.R107R 0.08 TCGA-05-4402-01 7 130143804 130143804 T G MEST Missense_Mutation p.V286G 0.08 deleterious(0) probably_damaging(0.961) TCGA-05-4402-01 7 135098287 135098287 G A CNOT4 Missense_Mutation p.L213F 0.05 deleterious(0) probably_damaging(0.997) TCGA-05-4402-01 7 138602619 138602619 C G KIAA1549 Missense_Mutation p.D585H 0.15 tolerated(0.4) benign(0.01) TCGA-05-4402-01 7 143027907 143027907 T G CLCN1 Missense_Mutation p.V299G 0.29 deleterious(0) probably_damaging(0.998) TCGA-05-4402-01 7 2108903 2108903 C T MAD1L1 Missense_Mutation p.E382K 0.07 tolerated(0.28) benign(0.303) TCGA-05-4402-01 7 43548608 43548608 C T HECW1 Silent p.L1303L 0.05 TCGA-05-4402-01 7 55242482 55242506 CATCTCCGAAAGCCAACAAGGAAAT A EGFR In_Frame_Del p.T751_I759delinsN 0.36 TCGA-05-4402-01 7 55242506 55242506 T A EGFR Missense_Mutation p.I759N 0.33 deleterious(0) probably_damaging(1) TCGA-05-4402-01 7 94059741 94059741 G C COL1A2 3'UTR 0.09 TCGA-05-4402-01 7 96810322 96810322 A G ACN9 Splice_Site p.X59_splice 0.22 TCGA-05-4402-01 8 103291157 103291157 C G UBR5 Missense_Mutation p.R2062T 0.06 tolerated(0.23) possibly_damaging(0.769) TCGA-05-4402-01 8 113694818 113694818 G A CSMD3 Missense_Mutation p.R844W 0.13 deleterious(0.01) probably_damaging(1) TCGA-05-4402-01 8 124089411 124089411 G C TBC1D31 Missense_Mutation p.L46F 0.06 deleterious(0) possibly_damaging(0.893) TCGA-05-4402-01 8 144689207 144689207 G C PYCRL Silent p.V96V 0.09 TCGA-05-4402-01 8 27287917 27287917 G A PTK2B Silent p.Q217Q 0.10 TCGA-05-4402-01 8 63978592 63978592 C G TTPA Missense_Mutation p.E141D 0.44 deleterious(0) possibly_damaging(0.628) TCGA-05-4402-01 8 90937445 90937445 G - OSGIN2 Frame_Shift_Del p.I447Yfs*8 0.10 TCGA-05-4402-01 9 100258036 100258036 C T TDRD7 Silent p.V1056V 0.12 TCGA-05-4402-01 9 134003067 134003067 C T NUP214 Missense_Mutation p.L68F 0.04 unknown(0) TCGA-05-4402-01 X 101909157 101909157 T A GPRASP1 Missense_Mutation p.S106T 0.28 tolerated(0.33) benign(0.334) TCGA-05-4402-01 X 106391025 106391025 G T NUP62CL Missense_Mutation p.A182E 0.22 deleterious_low_confidence(0.01) benign(0) TCGA-05-4402-01 X 110494845 110494845 C T CAPN6 Silent p.E275E 0.08 TCGA-05-4402-01 X 12905246 12905246 C A TLR7 Missense_Mutation p.P540H 0.29 tolerated(0.55) benign(0.008) TCGA-05-4402-01 X 12937571 12937571 C T TLR8 Missense_Mutation p.P138S 0.20 tolerated(0.88) benign(0.002) TCGA-05-4402-01 X 153539356 153539356 C G TKTL1 Missense_Mutation p.Q174E 0.09 tolerated(0.28) benign(0.033) TCGA-05-4402-01 X 153944516 153944516 C T GAB3 Missense_Mutation p.S54N 0.04 tolerated(0.05) benign(0.033) TCGA-05-4402-01 X 2658900 2658900 T C CD99 3'UTR 0.11 TCGA-05-4402-01 X 49068406 49068406 C T CACNA1F Missense_Mutation p.R1362Q 0.13 deleterious(0.02) benign(0.394) TCGA-05-4402-01 X 73811243 73811267 ATCAGCTACATAGCTGAGAGTTCAG - RLIM 3'UTR 0.34 TCGA-05-4402-01 X 75003459 75003459 G C MAGEE2 Missense_Mutation p.I476M 0.07 deleterious(0) benign(0.006) TCGA-05-4403-01 10 105169541 105169541 G T PDCD11 Missense_Mutation p.G319V 0.21 tolerated(0.07) benign(0.14) TCGA-05-4403-01 10 125769566 125769566 T A CHST15 3'UTR 0.30 TCGA-05-4403-01 10 49634457 49634457 G T MAPK8 Silent p.L302L 0.20 TCGA-05-4403-01 10 6054742 6054742 C T IL2RA 3'UTR 0.22 TCGA-05-4403-01 10 88819956 88819956 C G GLUD1 Missense_Mutation p.D414H 0.15 tolerated(0.21) possibly_damaging(0.55) TCGA-05-4403-01 11 119547916 119547916 T C PVRL1 Silent p.V249V 0.16 TCGA-05-4403-01 11 12281439 12281439 C T MICAL2 Missense_Mutation p.P1110L 0.12 deleterious_low_confidence(0) possibly_damaging(0.754) TCGA-05-4403-01 11 134062761 134062761 C A NCAPD3 Missense_Mutation p.G623V 0.26 deleterious(0) probably_damaging(0.997) TCGA-05-4403-01 11 18637496 18637496 G A SPTY2D1 Nonsense_Mutation p.Q109* 0.21 TCGA-05-4403-01 11 22363306 22363306 G T SLC17A6 Missense_Mutation p.G107W 0.19 deleterious(0) possibly_damaging(0.906) TCGA-05-4403-01 11 27148881 27148881 C A BBOX1 Silent p.R349R 0.14 TCGA-05-4403-01 11 57319895 57319895 G A UBE2L6 Missense_Mutation p.P133L 0.24 tolerated(0.47) possibly_damaging(0.668) TCGA-05-4403-01 11 65351973 65351973 G A EHBP1L1 Missense_Mutation p.D1090N 0.28 tolerated(0.12) benign(0.071) TCGA-05-4403-01 11 73662017 73662017 G A DNAJB13 5'UTR 0.27 TCGA-05-4403-01 11 73950294 73950294 A G PPME1 Missense_Mutation p.D276G 0.21 tolerated(0.24) benign(0.079) TCGA-05-4403-01 11 77412022 77412022 T A RSF1 Missense_Mutation p.K751I 0.24 deleterious(0) benign(0.157) TCGA-05-4403-01 11 99715850 99715850 G A CNTN5 Missense_Mutation p.E145K 0.19 tolerated(0.74) benign(0.055) TCGA-05-4403-01 12 10573032 10573032 G A KLRC3 Nonsense_Mutation p.Q40* 0.20 TCGA-05-4403-01 12 10573045 10573045 T C KLRC3 Silent p.E35E 0.18 TCGA-05-4403-01 12 10588481 10588481 T C KLRC2 Silent p.E35E 0.08 TCGA-05-4403-01 12 11034986 11034986 G A PRH1 Missense_Mutation p.H117Y 0.26 tolerated_low_confidence(0.2) unknown(0) TCGA-05-4403-01 12 124298433 124298433 C T DNAH10 Missense_Mutation p.R1134C 0.26 probably_damaging(0.972) TCGA-05-4403-01 12 129563191 129563191 A T TMEM132D Missense_Mutation p.L668H 0.16 deleterious(0) probably_damaging(0.999) TCGA-05-4403-01 12 130912881 130912881 G - RIMBP2 Frame_Shift_Del p.P735Rfs*55 0.24 TCGA-05-4403-01 12 28459852 28459852 G T CCDC91 Nonsense_Mutation p.E149* 0.47 TCGA-05-4403-01 12 41387065 41387065 G T CNTN1 Missense_Mutation p.G703C 0.17 deleterious(0) probably_damaging(0.947) TCGA-05-4403-01 12 49438031 49438031 G A KMT2D Missense_Mutation p.P1714S 0.34 benign(0.243) TCGA-05-4403-01 12 58000753 58000753 G T DTX3 Missense_Mutation p.R36L 0.20 tolerated(0.14) benign(0.014) TCGA-05-4403-01 12 72332679 72332679 G T TPH2 5'UTR 0.43 TCGA-05-4403-01 13 26116057 26116057 G A ATP8A2 Missense_Mutation p.G218S 0.15 tolerated(0.07) benign(0.046) TCGA-05-4403-01 13 29001963 29001963 C T FLT1 Missense_Mutation p.G401E 0.16 deleterious(0) probably_damaging(1) TCGA-05-4403-01 13 46718649 46718649 G T LCP1 Missense_Mutation p.T394K 0.24 deleterious(0) possibly_damaging(0.545) TCGA-05-4403-01 13 58207613 58207613 T C PCDH17 Silent p.Y311Y 0.19 TCGA-05-4403-01 14 103932328 103932328 T G MARK3 Nonsense_Mutation p.L266* 0.39 TCGA-05-4403-01 14 105860917 105860917 G T PACS2 Missense_Mutation p.D875Y 0.48 deleterious(0) probably_damaging(1) TCGA-05-4403-01 14 20345046 20345046 C A OR4K2 Missense_Mutation p.A207E 0.10 deleterious(0) probably_damaging(0.996) TCGA-05-4403-01 14 23892851 23892851 C T MYH7 Missense_Mutation p.A1002T 0.27 deleterious(0.02) benign(0.139) TCGA-05-4403-01 14 24687414 24687414 C T NEDD8-MDP1 Missense_Mutation p.R25Q 0.26 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-05-4403-01 14 39530984 39530984 G A SEC23A Missense_Mutation p.T497I 0.17 deleterious(0.03) possibly_damaging(0.764) TCGA-05-4403-01 14 57268910 57268910 G T OTX2 Nonsense_Mutation p.S146* 0.36 TCGA-05-4403-01 15 22382965 22382965 C A OR4N4 Missense_Mutation p.R165S 0.05 tolerated(0.15) benign(0.341) TCGA-05-4403-01 15 51988120 51988120 T A SCG3 Missense_Mutation p.L306Q 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-05-4403-01 15 68695330 68695330 G A ITGA11 Missense_Mutation p.R31W 0.21 deleterious(0.03) benign(0.012) TCGA-05-4403-01 16 2481129 2481129 A T CCNF Splice_Site p.X6_splice 0.20 TCGA-05-4403-01 16 28877776 28877776 G T SH2B1 Missense_Mutation p.G121C 0.28 deleterious(0) probably_damaging(0.994) TCGA-05-4403-01 16 30505572 30505572 C T ITGAL Missense_Mutation p.S418L 0.15 tolerated(0.21) benign(0.002) TCGA-05-4403-01 16 3187321 3187321 G A ZNF213 Missense_Mutation p.E14K 0.24 deleterious(0) possibly_damaging(0.761) TCGA-05-4403-01 16 58550115 58550115 C T SETD6 Missense_Mutation p.A115V 0.15 deleterious(0.05) benign(0.035) TCGA-05-4403-01 16 66919297 66919297 C G PDP2 Silent p.T370T 0.23 TCGA-05-4403-01 16 72050929 72050931 ATT - DHODH In_Frame_Del p.F148del 0.28 TCGA-05-4403-01 16 84164817 84164818 - T HSDL1 Frame_Shift_Ins p.S37Kfs*7 0.27 TCGA-05-4403-01 16 87446014 87446014 A G ZCCHC14 Silent p.R634R 0.13 TCGA-05-4403-01 17 37564483 37564483 C A MED1 Missense_Mutation p.V1331L 0.21 tolerated_low_confidence(0.1) unknown(0) TCGA-05-4403-01 17 42745037 42745037 T C C17orf104 Silent p.N586N 0.30 TCGA-05-4403-01 17 4648196 4648196 G A ZMYND15 Silent p.T631T 0.17 TCGA-05-4403-01 17 5042700 5042700 G A USP6 Missense_Mutation p.R410H 0.19 deleterious_low_confidence(0.01) benign(0.019) TCGA-05-4403-01 17 54554984 54554984 G C ANKFN1 Missense_Mutation p.V640L 0.19 tolerated(0.08) benign(0.32) TCGA-05-4403-01 17 60348763 60348763 G A TBC1D3P2 RNA 0.22 TCGA-05-4403-01 17 74733003 74733003 C G SRSF2 Silent p.L80L 0.17 TCGA-05-4403-01 18 28714691 28714691 C A DSC1 Missense_Mutation p.A574S 0.35 tolerated(0.71) benign(0.005) TCGA-05-4403-01 18 29171841 29171841 C A TTR 5'UTR 0.25 TCGA-05-4403-01 18 7036072 7036072 C T LAMA1 Missense_Mutation p.G585R 0.20 deleterious(0.03) probably_damaging(0.911) TCGA-05-4403-01 19 12491138 12491138 C A CTD-3105H18.14 3'UTR 0.25 TCGA-05-4403-01 19 15338369 15338369 C T EPHX3 Missense_Mutation p.R321H 0.27 tolerated(0.59) benign(0.022) TCGA-05-4403-01 19 18096157 18096157 G A KCNN1 Silent p.L318L 0.20 TCGA-05-4403-01 19 37854370 37854370 G T HKR1 Missense_Mutation p.C558F 0.21 deleterious(0) probably_damaging(1) TCGA-05-4403-01 19 38985136 38985136 G T RYR1 Missense_Mutation p.R2140L 0.19 benign(0.001) TCGA-05-4403-01 19 40317399 40317399 C A DYRK1B Missense_Mutation p.G442C 0.31 deleterious(0.04) probably_damaging(0.99) TCGA-05-4403-01 19 53857024 53857024 G T ZNF845 3'UTR 0.19 TCGA-05-4403-01 19 54314312 54314312 C T NLRP12 Missense_Mutation p.E201K 0.27 tolerated(0.18) possibly_damaging(0.804) TCGA-05-4403-01 19 55814152 55814152 G A BRSK1 Silent p.L315L 0.25 TCGA-05-4403-01 19 58190033 58190033 C A ZSCAN4 Missense_Mutation p.D354E 0.24 tolerated(0.23) benign(0.127) TCGA-05-4403-01 19 9045932 9045932 G A MUC16 Missense_Mutation p.S11900F 0.17 possibly_damaging(0.469) TCGA-05-4403-01 19 9088208 9088208 G C MUC16 Missense_Mutation p.P1203A 0.25 unknown(0) TCGA-05-4403-01 1 101196962 101196962 C A VCAM1 Silent p.I471I 0.18 TCGA-05-4403-01 1 10209284 10209284 A T UBE4B Silent p.A878A 0.20 TCGA-05-4403-01 1 120539844 120539844 C A NOTCH2 Missense_Mutation p.G176V 0.17 deleterious(0) probably_damaging(1) TCGA-05-4403-01 1 152279982 152279982 G T FLG Missense_Mutation p.D2460E 0.18 possibly_damaging(0.84) TCGA-05-4403-01 1 152281324 152281324 G C FLG Nonsense_Mutation p.S2013* 0.20 TCGA-05-4403-01 1 152573497 152573497 G T LCE3C 3'UTR 0.18 TCGA-05-4403-01 1 193099332 193099332 C G CDC73 Missense_Mutation p.P89R 0.20 deleterious(0) probably_damaging(0.996) TCGA-05-4403-01 1 216737685 216737685 C T ESRRG Silent p.P258P 0.23 TCGA-05-4403-01 1 224424241 224424241 G A NVL Missense_Mutation p.A778V 0.16 tolerated(0.21) benign(0.002) TCGA-05-4403-01 1 237052596 237052596 G C MTR Silent p.P989P 0.17 TCGA-05-4403-01 1 247587992 247587992 G C NLRP3 Missense_Mutation p.W416S 0.15 deleterious(0) probably_damaging(0.999) TCGA-05-4403-01 1 248343317 248343317 C A OR2M2 Silent p.S10S 0.18 TCGA-05-4403-01 1 46867858 46867858 C T FAAH Silent p.L97L 0.22 TCGA-05-4403-01 1 97278882 97278882 A C PTBP2 Missense_Mutation p.Q506P 0.25 tolerated(0.07) probably_damaging(0.995) TCGA-05-4403-01 20 42265860 42265860 G T IFT52 Nonsense_Mutation p.E363* 0.26 TCGA-05-4403-01 20 42574596 42574596 G T TOX2 Intron 0.32 TCGA-05-4403-01 20 56090656 56090656 C A CTCFL Intron 0.20 TCGA-05-4403-01 20 57766823 57766823 C - ZNF831 Frame_Shift_Del p.H251Tfs*11 0.28 TCGA-05-4403-01 20 60861678 60861678 G A OSBPL2 Missense_Mutation p.D346N 0.19 tolerated(0.14) benign(0.009) TCGA-05-4403-01 20 61150822 61150822 C A C20orf166 5'UTR 0.21 TCGA-05-4403-01 21 31655088 31655088 G T KRTAP24-1 Missense_Mutation p.L55I 0.28 tolerated(0.07) possibly_damaging(0.874) TCGA-05-4403-01 21 45713696 45713696 G A AIRE Missense_Mutation p.G435R 0.28 deleterious(0.02) probably_damaging(0.922) TCGA-05-4403-01 21 48068529 48068529 G A PRMT2 Missense_Mutation p.A163T 0.18 tolerated(0.22) possibly_damaging(0.861) TCGA-05-4403-01 22 23495307 23495307 C T RAB36 Silent p.P171P 0.20 TCGA-05-4403-01 22 24122621 24122621 C T MMP11 Silent p.S138S 0.24 TCGA-05-4403-01 22 26423541 26423541 C T MYO18B Missense_Mutation p.A2534V 0.28 deleterious(0.02) benign(0.215) TCGA-05-4403-01 22 31501067 31501067 C G SELM Silent p.V109V 0.23 TCGA-05-4403-01 2 108488912 108488912 C A RGPD4 Silent p.P1484P 0.06 TCGA-05-4403-01 2 116593780 116593780 G C DPP10 Missense_Mutation p.K670N 0.11 tolerated(0.15) benign(0) TCGA-05-4403-01 2 120097480 120097480 C T C2orf76 Missense_Mutation p.R19H 0.11 tolerated(0.06) possibly_damaging(0.711) TCGA-05-4403-01 2 125555898 125555898 G T CNTNAP5 Splice_Site p.X1072_splice 0.22 TCGA-05-4403-01 2 159196812 159196812 T C CCDC148 Missense_Mutation p.H143R 0.21 tolerated(0.12) possibly_damaging(0.702) TCGA-05-4403-01 2 219536740 219536740 C A RNF25 5'UTR 0.25 TCGA-05-4403-01 2 225266048 225266048 A T FAM124B Missense_Mutation p.F146L 0.22 deleterious(0.03) possibly_damaging(0.884) TCGA-05-4403-01 2 231266463 231266463 G T SP140L Missense_Mutation p.V529L 0.17 deleterious(0) probably_damaging(0.982) TCGA-05-4403-01 2 44565618 44565618 T C PREPL Missense_Mutation p.M343V 0.23 tolerated(1) benign(0.012) TCGA-05-4403-01 2 56420011 56420011 A T CCDC85A Nonsense_Mutation p.K226* 0.22 TCGA-05-4403-01 2 74492357 74492357 C T SLC4A5 Missense_Mutation p.G146S 0.17 deleterious(0) probably_damaging(0.974) TCGA-05-4403-01 2 89309947 89309947 A C IGKV1-9 Missense_Mutation p.M3R 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.553) TCGA-05-4403-01 2 89309948 89309948 T G IGKV1-9 Missense_Mutation p.M3L 0.23 deleterious_low_confidence(0.02) benign(0.029) TCGA-05-4403-01 2 90458413 90458413 C A CH17-132F21.1 Missense_Mutation p.S30Y 0.07 TCGA-05-4403-01 3 133362940 133362940 G A TOPBP1 Missense_Mutation p.A591V 0.14 deleterious(0.02) benign(0.324) TCGA-05-4403-01 3 152553711 152553711 C T P2RY1 Missense_Mutation p.T47M 0.16 deleterious(0.01) probably_damaging(0.994) TCGA-05-4403-01 3 36898996 36898996 C A TRANK1 Missense_Mutation p.L695F 0.14 deleterious(0) probably_damaging(0.915) TCGA-05-4403-01 3 47451187 47451187 C T PTPN23 Silent p.A664A 0.24 TCGA-05-4403-01 3 49927404 49927404 C T MST1R Silent p.L1300L 0.26 TCGA-05-4403-01 3 54958983 54958983 C A LRTM1 Silent p.L89L 0.18 TCGA-05-4403-01 3 72495721 72495721 G C RYBP Missense_Mutation p.S117R 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-05-4403-01 3 77666743 77666743 G T ROBO2 Missense_Mutation p.D1141Y 0.24 deleterious(0) possibly_damaging(0.861) TCGA-05-4403-01 4 119059262 119059262 C T NDST3 Silent p.G426G 0.12 TCGA-05-4403-01 4 152023255 152023255 T C RPS3A Intron 0.22 TCGA-05-4403-01 4 15444288 15444288 C A C1QTNF7 Silent p.V252V 0.37 TCGA-05-4403-01 4 155241865 155241865 G T DCHS2 Silent p.I1107I 0.05 TCGA-05-4403-01 4 15938263 15938263 G T FGFBP1 5'UTR 0.37 TCGA-05-4403-01 4 160259617 160259617 C G RAPGEF2 Missense_Mutation p.P603A 0.17 tolerated(0.37) benign(0.002) TCGA-05-4403-01 4 166996110 166996110 C T TLL1 Missense_Mutation p.R757C 0.17 deleterious(0) probably_damaging(0.931) TCGA-05-4403-01 4 25674865 25674865 C A SLC34A2 Missense_Mutation p.T402N 0.32 tolerated(0.06) possibly_damaging(0.842) TCGA-05-4403-01 4 8470028 8470028 A T TRMT44 Missense_Mutation p.T628S 0.04 tolerated(0.58) benign(0.016) TCGA-05-4403-01 5 154396120 154396120 A T KIF4B Missense_Mutation p.M901L 0.21 tolerated(0.22) benign(0.001) TCGA-05-4403-01 5 161128622 161128622 T C GABRA6 Missense_Mutation p.V402A 0.26 tolerated(0.68) benign(0) TCGA-05-4403-01 5 41045927 41045927 C A MROH2B Missense_Mutation p.S586I 0.24 deleterious(0.01) benign(0.393) TCGA-05-4403-01 5 70898367 70898367 G A MCCC2 Missense_Mutation p.V140I 0.23 deleterious_low_confidence(0.05) benign(0.36) TCGA-05-4403-01 5 79378185 79378185 C T THBS4 Intron 0.18 TCGA-05-4403-01 6 114379073 114379075 TCA - HS3ST5 In_Frame_Del p.D129del 0.18 TCGA-05-4403-01 6 116757636 116757636 A G DSE Missense_Mutation p.I669V 0.22 tolerated(1) benign(0) TCGA-05-4403-01 6 118556737 118556737 G A SLC35F1 Missense_Mutation p.D139N 0.22 deleterious(0) probably_damaging(0.987) TCGA-05-4403-01 6 132006597 132006597 G T ENPP3 Missense_Mutation p.R405L 0.23 deleterious(0) probably_damaging(1) TCGA-05-4403-01 6 132910150 132910151 - A TAAR5 Frame_Shift_Ins p.A226Cfs*22 0.18 TCGA-05-4403-01 6 13978178 13978178 T G RNF182 3'UTR 0.20 TCGA-05-4403-01 6 152557353 152557353 C - SYNE1 Frame_Shift_Del p.C6762Sfs*4 0.25 TCGA-05-4403-01 6 16254908 16254908 A T GMPR Missense_Mutation p.E136V 0.21 deleterious(0.01) probably_damaging(0.921) TCGA-05-4403-01 6 53380938 53380938 C A GCLC Missense_Mutation p.D177Y 0.23 deleterious(0) probably_damaging(0.978) TCGA-05-4403-01 6 54735197 54735197 A T FAM83B Silent p.R51R 0.20 TCGA-05-4403-01 6 87726137 87726137 G A HTR1E Missense_Mutation p.R362Q 0.22 deleterious(0.01) benign(0.018) TCGA-05-4403-01 6 89907932 89907932 A G GABRR1 Missense_Mutation p.Y127H 0.22 deleterious(0) probably_damaging(0.991) TCGA-05-4403-01 7 112424368 112424368 A G TMEM168 Silent p.T171T 0.31 TCGA-05-4403-01 7 116380037 116380037 C T MET Missense_Mutation p.H476Y 0.17 tolerated(0.16) probably_damaging(0.993) TCGA-05-4403-01 7 142836664 142836664 C A PIP Missense_Mutation p.P124T 0.20 deleterious(0.04) probably_damaging(0.997) TCGA-05-4403-01 7 17885294 17885294 T A SNX13 Silent p.A363A 0.36 TCGA-05-4403-01 7 45614391 45614391 G C ADCY1 Silent p.A83A 0.24 TCGA-05-4403-01 7 70254903 70254903 C T AUTS2 Missense_Mutation p.R901C 0.17 tolerated(0.08) probably_damaging(0.931) TCGA-05-4403-01 7 931971 931971 A T GET4 Missense_Mutation p.Q221L 0.24 tolerated(0.14) benign(0.009) TCGA-05-4403-01 8 117783936 117783936 C T UTP23 Missense_Mutation p.P202L 0.24 deleterious(0) probably_damaging(0.978) TCGA-05-4403-01 8 125464025 125464025 G A TRMT12 Missense_Mutation p.R286Q 0.22 deleterious(0.02) possibly_damaging(0.684) TCGA-05-4403-01 8 13948039 13948039 G A SGCZ Silent p.C284C 0.20 TCGA-05-4403-01 8 33361291 33361291 T C TTI2 Missense_Mutation p.R364G 0.20 tolerated(0.1) benign(0.174) TCGA-05-4403-01 8 42196548 42196548 A G POLB Missense_Mutation p.K27R 0.27 tolerated(0.35) benign(0.004) TCGA-05-4403-01 8 42612132 42612132 T G CHRNA6 Missense_Mutation p.I105L 0.18 tolerated(0.13) probably_damaging(0.995) TCGA-05-4403-01 8 6378821 6378821 A T ANGPT2 Missense_Mutation p.I226N 0.22 tolerated(0.07) possibly_damaging(0.555) TCGA-05-4403-01 8 87076326 87076326 G A PSKH2 Silent p.T240T 0.20 TCGA-05-4403-01 9 104356823 104356823 C T PPP3R2 Nonsense_Mutation p.W130* 0.24 TCGA-05-4403-01 9 3257077 3257077 C A RFX3 Silent p.V576V 0.38 TCGA-05-4403-01 9 6013371 6013371 C T RANBP6 Missense_Mutation p.G746D 0.52 deleterious(0.01) possibly_damaging(0.768) TCGA-05-4403-01 9 73225623 73225623 C T TRPM3 Missense_Mutation p.D845N 0.16 tolerated(0.2) benign(0.02) TCGA-05-4403-01 X 109693957 109693957 G C RGAG1 Missense_Mutation p.D38H 0.42 deleterious_low_confidence(0) probably_damaging(0.922) TCGA-05-4403-01 X 109696066 109696066 G T RGAG1 Missense_Mutation p.A741S 0.30 tolerated(1) benign(0.009) TCGA-05-4403-01 X 138687138 138687138 A C MCF2 Nonsense_Mutation p.Y597* 0.49 TCGA-05-4403-01 X 34961502 34961502 G C FAM47B Missense_Mutation p.G185A 0.27 tolerated(0.22) possibly_damaging(0.742) TCGA-05-4403-01 X 35974187 35974187 A G CXorf22 Silent p.E428E 0.31 TCGA-05-4403-01 X 47032557 47032557 C T RBM10 Nonsense_Mutation p.Q155* 0.21 TCGA-05-4403-01 Y 15467250 15467250 C G UTY Missense_Mutation p.R468P 0.23 deleterious_low_confidence(0) benign(0.002) TCGA-05-4405-01 10 101964958 101964958 T A CHUK Splice_Site p.X411_splice 0.04 TCGA-05-4405-01 10 106214201 106214201 G T CCDC147 Missense_Mutation p.M844I 0.17 tolerated(0.25) benign(0.003) TCGA-05-4405-01 10 108380225 108380225 G A SORCS1 Silent p.G919G 0.08 TCGA-05-4405-01 10 128821561 128821561 G T DOCK1 Silent p.V454V 0.04 TCGA-05-4405-01 10 129903152 129903152 C A MKI67 Missense_Mutation p.G2318C 0.25 deleterious(0) probably_damaging(1) TCGA-05-4405-01 10 13152401 13152401 G A OPTN Missense_Mutation p.M98I 0.09 tolerated(0.19) benign(0.002) TCGA-05-4405-01 10 14894416 14894416 T G HSPA14 Missense_Mutation p.V207G 0.22 deleterious(0) benign(0.121) TCGA-05-4405-01 10 15255798 15255798 C T FAM171A1 Missense_Mutation p.V597I 0.29 tolerated(0.19) benign(0.058) TCGA-05-4405-01 10 44112635 44112635 T C ZNF485 Missense_Mutation p.Y382H 0.04 deleterious(0.01) probably_damaging(0.955) TCGA-05-4405-01 10 45941036 45941036 C A ALOX5 Silent p.L642L 0.27 TCGA-05-4405-01 10 52595854 52595854 G A A1CF Missense_Mutation p.A203V 0.05 deleterious(0) possibly_damaging(0.887) TCGA-05-4405-01 10 6498720 6498720 C A PRKCQ Silent p.A521A 0.34 TCGA-05-4405-01 10 73053217 73053217 A T UNC5B Missense_Mutation p.T610S 0.25 tolerated(0.19) benign(0.018) TCGA-05-4405-01 10 88769657 88769657 G T RP11-96C23.10 RNA 0.15 TCGA-05-4405-01 10 99361691 99361691 G A HOGA1 Missense_Mutation p.G260R 0.15 deleterious(0) probably_damaging(0.985) TCGA-05-4405-01 11 10822111 10822111 G A EIF4G2 Silent p.H576H 0.47 TCGA-05-4405-01 11 111959712 111959712 A T SDHD Silent p.A97A 0.53 TCGA-05-4405-01 11 116691784 116691784 G A APOA4 Silent p.G330G 0.47 TCGA-05-4405-01 11 133789980 133789980 C A IGSF9B Missense_Mutation p.G1214C 0.42 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-05-4405-01 11 17741219 17741219 T G MYOD1 5'UTR 0.41 TCGA-05-4405-01 11 34680205 34680205 G T EHF Missense_Mutation p.V267L 0.40 tolerated(0.06) probably_damaging(0.996) TCGA-05-4405-01 11 45226314 45226314 A C PRDM11 Missense_Mutation p.K180T 0.15 tolerated(0.28) benign(0.005) TCGA-05-4405-01 11 56000616 56000616 G C OR5T2 Missense_Mutation p.H16D 0.16 tolerated_low_confidence(0.32) benign(0.01) TCGA-05-4405-01 11 60231748 60231748 C T MS4A1 Intron 0.50 TCGA-05-4405-01 11 61250221 61250221 C T PPP1R32 Missense_Mutation p.R108C 0.50 deleterious(0.01) benign(0.398) TCGA-05-4405-01 11 65714870 65714870 T A TSGA10IP RNA 0.62 TCGA-05-4405-01 11 66105334 66105334 C A BRMS1 Intron 0.47 TCGA-05-4405-01 12 101017690 101017690 C A GAS2L3 Silent p.V369V 0.25 TCGA-05-4405-01 12 10233927 10233927 C A CLEC1A Missense_Mutation p.L100F 0.33 deleterious(0.04) benign(0.015) TCGA-05-4405-01 12 102433651 102433651 G C CCDC53 Missense_Mutation p.Q144E 0.11 deleterious(0.02) possibly_damaging(0.595) TCGA-05-4405-01 12 130647951 130647951 C G FZD10 Missense_Mutation p.S155W 0.05 deleterious(0.01) possibly_damaging(0.849) TCGA-05-4405-01 12 132401562 132401562 G T ULK1 Missense_Mutation p.D713Y 0.29 tolerated(0.14) possibly_damaging(0.798) TCGA-05-4405-01 12 21331534 21331534 A G SLCO1B1 Missense_Mutation p.Y169C 0.30 tolerated(0.06) probably_damaging(0.964) TCGA-05-4405-01 12 247477 247478 GC - IQSEC3 Frame_Shift_Del p.A318Rfs*148 0.21 TCGA-05-4405-01 12 3763466 3763466 C A EFCAB4B Nonsense_Mutation p.E320* 0.38 TCGA-05-4405-01 12 41323638 41323638 A G CNTN1 Silent p.V179V 0.15 TCGA-05-4405-01 12 49391858 49391858 C T DDN Silent p.G267G 0.14 TCGA-05-4405-01 12 52967091 52967091 C A KRT74 Missense_Mutation p.K157N 0.10 deleterious(0) probably_damaging(0.994) TCGA-05-4405-01 12 80658807 80658807 A T OTOGL Missense_Mutation p.I672F 0.33 deleterious(0) probably_damaging(0.935) TCGA-05-4405-01 12 80729818 80729818 T C OTOGL Missense_Mutation p.S1491P 0.15 deleterious(0) probably_damaging(0.999) TCGA-05-4405-01 12 91449623 91449623 G A KERA Nonsense_Mutation p.Q146* 0.09 TCGA-05-4405-01 12 91449625 91449625 T C KERA Missense_Mutation p.E145G 0.09 deleterious(0) probably_damaging(0.988) TCGA-05-4405-01 12 9243913 9243913 A G A2M Missense_Mutation p.S785P 0.15 deleterious(0.02) benign(0.288) TCGA-05-4405-01 12 9317851 9317851 A G PZP Missense_Mutation p.S791P 0.23 deleterious(0.02) possibly_damaging(0.8) TCGA-05-4405-01 12 94794689 94794689 A C CCDC41 Missense_Mutation p.F162L 0.10 tolerated(0.13) probably_damaging(0.994) TCGA-05-4405-01 13 35630253 35630253 T G NBEA Missense_Mutation p.V360G 0.25 deleterious(0) probably_damaging(1) TCGA-05-4405-01 13 50038170 50038170 A C SETDB2 Missense_Mutation p.K74N 0.35 tolerated(0.49) benign(0.007) TCGA-05-4405-01 13 70681538 70681538 T A KLHL1 Silent p.P98P 0.27 TCGA-05-4405-01 14 101201115 101201115 A C DLK1 Missense_Mutation p.K345T 0.07 deleterious(0) possibly_damaging(0.735) TCGA-05-4405-01 14 102452390 102452390 C T DYNC1H1 Nonsense_Mutation p.Q610* 0.09 TCGA-05-4405-01 14 29237565 29237565 C A FOXG1 Missense_Mutation p.N360K 0.10 deleterious(0.02) benign(0.3) TCGA-05-4405-01 14 29237715 29237715 C T FOXG1 Silent p.L410L 0.09 TCGA-05-4405-01 14 63175029 63175029 G T KCNH5 Missense_Mutation p.Q722K 0.10 tolerated(0.93) benign(0.037) TCGA-05-4405-01 15 30024944 30024944 G A TJP1 Silent p.F604F 0.37 TCGA-05-4405-01 15 32450697 32450697 G T CHRNA7 Missense_Mutation p.R257L 0.25 deleterious(0) probably_damaging(0.998) TCGA-05-4405-01 15 37184485 37184485 G T MEIS2 Missense_Mutation p.H441Q 0.32 tolerated_low_confidence(0.13) benign(0.145) TCGA-05-4405-01 15 37184493 37184493 T G MEIS2 Missense_Mutation p.M439L 0.32 tolerated_low_confidence(0.82) benign(0.001) TCGA-05-4405-01 15 42028569 42028569 G - MGA Frame_Shift_Del p.G1370Afs*26 0.26 TCGA-05-4405-01 15 43821703 43821703 C G MAP1A Missense_Mutation p.P2678A 0.10 benign(0.008) TCGA-05-4405-01 15 48053382 48053382 G A SEMA6D Missense_Mutation p.D104N 0.16 deleterious(0.01) probably_damaging(1) TCGA-05-4405-01 15 75715034 75715034 G - SIN3A Frame_Shift_Del p.P107Hfs*15 0.27 TCGA-05-4405-01 15 75902273 75902273 G A SNUPN Silent p.V122V 0.08 TCGA-05-4405-01 15 77471865 77471865 C A PEAK1 Missense_Mutation p.D802Y 0.15 deleterious(0) possibly_damaging(0.759) TCGA-05-4405-01 15 79051780 79051780 G C ADAMTS7 Missense_Mutation p.R1682G 0.22 deleterious(0) probably_damaging(0.967) TCGA-05-4405-01 15 90019991 90019991 A G RHCG Missense_Mutation p.W436R 0.17 deleterious(0) probably_damaging(0.999) TCGA-05-4405-01 15 90348375 90348375 C G ANPEP Silent p.T277T 0.14 TCGA-05-4405-01 15 97326876 97326876 G T SPATA8 5'UTR 0.22 TCGA-05-4405-01 15 97326877 97326877 G T SPATA8 5'UTR 0.21 TCGA-05-4405-01 16 15155638 15155638 G A RRN3 Missense_Mutation p.S640F 0.15 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-05-4405-01 16 2159381 2159381 C A PKD1 Missense_Mutation p.E1929D 0.21 benign(0.348) TCGA-05-4405-01 16 2159382 2159382 T A PKD1 Missense_Mutation p.E1929V 0.21 benign(0.017) TCGA-05-4405-01 16 2164306 2164306 C A PKD1 Missense_Mutation p.E906D 0.20 benign(0.003) TCGA-05-4405-01 16 2225515 2225515 G C TRAF7 Silent p.V506V 0.11 TCGA-05-4405-01 16 23573999 23573999 A T UBFD1 Missense_Mutation p.K228N 0.31 deleterious(0.03) probably_damaging(0.941) TCGA-05-4405-01 16 24202456 24202456 G T PRKCB Missense_Mutation p.G590C 0.10 deleterious(0) probably_damaging(0.997) TCGA-05-4405-01 16 28856776 28856776 C T TUFM Silent p.K91K 0.12 TCGA-05-4405-01 16 4057537 4057537 C A ADCY9 Silent p.S572S 0.17 TCGA-05-4405-01 16 50816329 50816329 G A CYLD Missense_Mutation p.G593D 0.24 deleterious(0) probably_damaging(1) TCGA-05-4405-01 16 50830431 50830431 G C CYLD 3'UTR 0.16 TCGA-05-4405-01 16 50830433 50830433 G T CYLD 3'UTR 0.17 TCGA-05-4405-01 16 51174774 51174774 G A SALL1 Silent p.F453F 0.12 TCGA-05-4405-01 16 55862795 55862795 C A CES1 Silent p.V48V 0.20 TCGA-05-4405-01 16 71418734 71418734 G T CALB2 Missense_Mutation p.D208Y 0.04 deleterious(0) probably_damaging(1) TCGA-05-4405-01 17 10358324 10358324 G A MYH4 Missense_Mutation p.T790M 0.07 deleterious(0.01) probably_damaging(0.947) TCGA-05-4405-01 17 10533474 10533474 T G MYH3 Missense_Mutation p.K1833Q 0.06 tolerated(0.09) benign(0.001) TCGA-05-4405-01 17 18002385 18002385 G A DRG2 Missense_Mutation p.A124T 0.05 tolerated(0.07) possibly_damaging(0.626) TCGA-05-4405-01 17 18566444 18566444 T G ZNF286B Silent p.S125S 0.05 TCGA-05-4405-01 17 19283155 19283155 G A MAPK7 Missense_Mutation p.R98Q 0.06 deleterious(0) possibly_damaging(0.602) TCGA-05-4405-01 17 26715397 26715397 G T SARM1 Missense_Mutation p.G554C 0.21 deleterious(0) probably_damaging(0.998) TCGA-05-4405-01 17 27009765 27009765 G T SUPT6H Missense_Mutation p.G540W 0.26 deleterious(0) probably_damaging(1) TCGA-05-4405-01 17 27009766 27009766 G C SUPT6H Missense_Mutation p.G540A 0.25 deleterious(0) probably_damaging(0.978) TCGA-05-4405-01 17 27401671 27401671 G T TIAF1 5'UTR 0.38 TCGA-05-4405-01 17 34432750 34432750 G T CCL4 3'UTR 0.30 TCGA-05-4405-01 17 3663536 3663536 G T ITGAE Missense_Mutation p.P215H 0.18 deleterious(0) probably_damaging(0.995) TCGA-05-4405-01 17 44374805 44374805 T A LRRC37A Missense_Mutation p.L769Q 0.22 deleterious(0.04) possibly_damaging(0.732) TCGA-05-4405-01 17 48245884 48245884 T A SGCA Missense_Mutation p.L179M 0.40 deleterious(0) probably_damaging(0.999) TCGA-05-4405-01 17 4884585 4884585 A G CAMTA2 Missense_Mutation p.I235T 0.11 deleterious(0.03) possibly_damaging(0.684) TCGA-05-4405-01 17 48917075 48917075 C A WFIKKN2 Silent p.P142P 0.20 TCGA-05-4405-01 17 48917076 48917076 A G WFIKKN2 Missense_Mutation p.S143G 0.19 tolerated(0.18) benign(0.01) TCGA-05-4405-01 17 56598633 56598633 G A SEPT4 Missense_Mutation p.P381S 0.24 tolerated(0.05) probably_damaging(1) TCGA-05-4405-01 17 56620571 56620571 C A C17orf47 Missense_Mutation p.R326L 0.25 deleterious(0.01) possibly_damaging(0.858) TCGA-05-4405-01 17 56688569 56688569 G T TEX14 Silent p.I385I 0.20 TCGA-05-4405-01 17 56774181 56774181 C T RAD51C Nonsense_Mutation p.Q178* 0.10 TCGA-05-4405-01 17 64728940 64728940 A G PRKCA Silent p.G351G 0.21 TCGA-05-4405-01 17 71394502 71394502 G T SDK2 Missense_Mutation p.R1054S 0.22 tolerated(0.28) probably_damaging(0.981) TCGA-05-4405-01 17 72859251 72859251 G A FDXR Missense_Mutation p.P474L 0.22 tolerated(0.2) benign(0.021) TCGA-05-4405-01 17 73910944 73910944 C A FBF1 Nonsense_Mutation p.E885* 0.15 TCGA-05-4405-01 17 75208256 75208256 G T SEC14L1 Silent p.L612L 0.26 TCGA-05-4405-01 17 7577108 7577108 C A TP53 Missense_Mutation p.C277F 0.26 deleterious(0) probably_damaging(0.949) TCGA-05-4405-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.16 tolerated(0.11) benign(0.308) TCGA-05-4405-01 17 80445829 80445829 C A NARF Missense_Mutation p.D389E 0.05 tolerated(0.4) benign(0.009) TCGA-05-4405-01 17 9538752 9538752 C T WDR16 Nonsense_Mutation p.Q451* 0.07 TCGA-05-4405-01 18 32887072 32887072 G C ZNF271 RNA 0.13 TCGA-05-4405-01 18 34298456 34298456 G T FHOD3 Missense_Mutation p.Q890H 0.18 tolerated(0.08) probably_damaging(0.976) TCGA-05-4405-01 18 34324019 34324019 C A FHOD3 Missense_Mutation p.L1127I 0.33 deleterious(0) probably_damaging(0.999) TCGA-05-4405-01 18 59483224 59483224 C T RNF152 Missense_Mutation p.R158Q 0.37 tolerated(0.51) benign(0.342) TCGA-05-4405-01 18 61160414 61160414 C A SERPINB5 Intron 0.32 TCGA-05-4405-01 19 13041475 13041475 C A FARSA Missense_Mutation p.R79L 0.36 tolerated(0.33) benign(0.005) TCGA-05-4405-01 19 17057956 17057956 C A CPAMD8 Missense_Mutation p.V911L 0.21 tolerated(0.26) benign(0.075) TCGA-05-4405-01 19 19030529 19030529 G T DDX49 5'UTR 0.12 TCGA-05-4405-01 19 19654969 19654969 C T CILP2 Missense_Mutation p.P539S 0.22 deleterious(0.02) probably_damaging(0.987) TCGA-05-4405-01 19 22154156 22154156 C A ZNF208 Missense_Mutation p.C1227F 0.05 deleterious(0.02) probably_damaging(0.997) TCGA-05-4405-01 19 22155846 22155846 G T ZNF208 Missense_Mutation p.P664T 0.09 deleterious(0.02) probably_damaging(0.921) TCGA-05-4405-01 19 22255608 22255608 C A ZNF257 Intron 0.22 TCGA-05-4405-01 19 22574230 22574230 A G ZNF98 3'UTR 0.33 TCGA-05-4405-01 19 2762622 2762622 T C SGTA Missense_Mutation p.N173S 0.12 tolerated(0.08) benign(0.008) TCGA-05-4405-01 19 2877918 2877918 G A ZNF556 Missense_Mutation p.G321E 0.20 deleterious(0) probably_damaging(0.99) TCGA-05-4405-01 19 33355102 33355103 - C SLC7A9 Frame_Shift_Ins p.I127Hfs*82 0.14 TCGA-05-4405-01 19 38948237 38948237 T A RYR1 Missense_Mutation p.L631Q 0.33 probably_damaging(1) TCGA-05-4405-01 19 38991553 38991553 G C RYR1 Missense_Mutation p.E2513Q 0.29 benign(0.034) TCGA-05-4405-01 19 44981270 44981270 C G ZNF180 Missense_Mutation p.Q476H 0.07 tolerated(0.15) probably_damaging(0.968) TCGA-05-4405-01 19 47223906 47223906 G T STRN4 Missense_Mutation p.L746I 0.09 deleterious(0) probably_damaging(0.99) TCGA-05-4405-01 19 49100065 49100065 T G SULT2B1 Missense_Mutation p.S239A 0.11 tolerated(0.31) possibly_damaging(0.709) TCGA-05-4405-01 19 51274893 51274893 T C GPR32 Missense_Mutation p.S346P 0.10 tolerated(0.08) benign(0.01) TCGA-05-4405-01 19 53014138 53014138 C G ZNF578 Missense_Mutation p.H168Q 0.04 tolerated(1) possibly_damaging(0.466) TCGA-05-4405-01 19 53643854 53643854 C G ZNF347 Missense_Mutation p.G744R 0.20 deleterious(0) probably_damaging(0.998) TCGA-05-4405-01 19 53668345 53668345 G C ZNF665 Silent p.V466V 0.05 TCGA-05-4405-01 19 55177363 55177363 G T LILRB4 Missense_Mutation p.Q285H 0.07 tolerated(0.1) benign(0.005) TCGA-05-4405-01 19 55179179 55179179 C T LILRB4 Silent p.L379L 0.37 TCGA-05-4405-01 19 55401199 55401199 C T FCAR Silent p.T278T 0.09 TCGA-05-4405-01 19 56538820 56538820 C A NLRP5 Silent p.V407V 0.27 TCGA-05-4405-01 19 57286803 57286804 - A ZIM2 Frame_Shift_Ins p.E280Gfs*7 0.20 TCGA-05-4405-01 19 57641161 57641161 C A USP29 Missense_Mutation p.A373D 0.16 deleterious(0) probably_damaging(0.996) TCGA-05-4405-01 19 57641213 57641213 A C USP29 Missense_Mutation p.K390N 0.18 tolerated(0.17) benign(0.011) TCGA-05-4405-01 19 57931586 57931586 A T ZNF17 Silent p.G242G 0.32 TCGA-05-4405-01 19 58564911 58564911 G T ZSCAN1 Missense_Mutation p.G240V 0.33 tolerated(0.12) benign(0.005) TCGA-05-4405-01 19 5918634 5918634 C T RANBP3 Missense_Mutation p.G449E 0.11 deleterious(0) probably_damaging(0.999) TCGA-05-4405-01 19 6825072 6825072 G C VAV1 Missense_Mutation p.L221F 0.24 deleterious(0.01) benign(0.229) TCGA-05-4405-01 19 9047244 9047244 G T MUC16 Missense_Mutation p.L11463M 0.27 benign(0.003) TCGA-05-4405-01 19 9091786 9091786 G T MUC16 Nonsense_Mutation p.S10* 0.09 TCGA-05-4405-01 1 10363641 10363641 G A KIF1B Intron 0.05 TCGA-05-4405-01 1 114437980 114437980 G C AP4B1 Missense_Mutation p.Q643E 0.04 tolerated(0.58) benign(0.005) TCGA-05-4405-01 1 1148430 1148430 G A TNFRSF4 Silent p.D104D 0.19 TCGA-05-4405-01 1 115487071 115487071 G T SYCP1 Nonsense_Mutation p.E680* 0.21 TCGA-05-4405-01 1 1178014 1178014 C A FAM132A Missense_Mutation p.A275S 0.27 deleterious(0.01) possibly_damaging(0.682) TCGA-05-4405-01 1 152329152 152329152 C A FLG2 Missense_Mutation p.W370C 0.30 unknown(0) TCGA-05-4405-01 1 153012642 153012642 G T SPRR2D Missense_Mutation p.P61T 0.29 tolerated_low_confidence(0.12) unknown(0) TCGA-05-4405-01 1 155226464 155226464 C G SCAMP3 Splice_Site p.X299_splice 0.10 TCGA-05-4405-01 1 156020953 156020953 C A UBQLN4 Silent p.G142G 0.35 TCGA-05-4405-01 1 156617416 156617416 G A BCAN Missense_Mutation p.A195T 0.06 deleterious(0) probably_damaging(0.993) TCGA-05-4405-01 1 157738381 157738381 T A FCRL2 Missense_Mutation p.T236S 0.30 deleterious(0.01) probably_damaging(0.966) TCGA-05-4405-01 1 158300661 158300661 C G CD1B Missense_Mutation p.E85Q 0.10 tolerated(0.42) benign(0.006) TCGA-05-4405-01 1 158647525 158647525 G T SPTA1 Missense_Mutation p.H304Q 0.06 deleterious(0.04) probably_damaging(1) TCGA-05-4405-01 1 158735770 158735770 T G OR6N1 Silent p.R235R 0.06 TCGA-05-4405-01 1 159002405 159002405 G A IFI16 Missense_Mutation p.S418N 0.31 tolerated(0.2) benign(0.035) TCGA-05-4405-01 1 159163316 159163316 G T CADM3 Silent p.R196R 0.31 TCGA-05-4405-01 1 161138874 161138874 G A PPOX Silent p.L236L 0.35 TCGA-05-4405-01 1 161138875 161138875 C T PPOX Missense_Mutation p.P237S 0.35 tolerated(0.14) benign(0.39) TCGA-05-4405-01 1 16265829 16265829 C T SPEN Silent p.F3634F 0.34 TCGA-05-4405-01 1 16945715 16945715 C A RP5-1182A14.5 3'Flank 0.06 TCGA-05-4405-01 1 175334328 175334328 T A TNR Missense_Mutation p.D802V 0.23 deleterious(0) probably_damaging(0.996) TCGA-05-4405-01 1 180047644 180047644 A G CEP350 Silent p.L1938L 0.16 TCGA-05-4405-01 1 181701955 181701955 G C CACNA1E Silent p.R911R 0.06 TCGA-05-4405-01 1 181745260 181745260 C A CACNA1E Silent p.V1721V 0.06 TCGA-05-4405-01 1 181745334 181745334 G A CACNA1E Missense_Mutation p.R1746H 0.07 deleterious(0) possibly_damaging(0.522) TCGA-05-4405-01 1 185159774 185159774 C T SWT1 Missense_Mutation p.T508M 0.34 deleterious(0) probably_damaging(1) TCGA-05-4405-01 1 19186147 19186147 G T TAS1R2 Missense_Mutation p.P3H 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.907) TCGA-05-4405-01 1 197032176 197032176 C G F13B Missense_Mutation p.G26R 0.24 deleterious(0.01) possibly_damaging(0.616) TCGA-05-4405-01 1 205039560 205039560 G T CNTN2 Missense_Mutation p.R813M 0.36 tolerated(0.1) possibly_damaging(0.541) TCGA-05-4405-01 1 205133027 205133027 T A DSTYK Missense_Mutation p.I461F 0.06 deleterious(0.01) possibly_damaging(0.56) TCGA-05-4405-01 1 207679324 207679324 G T CR1 Missense_Mutation p.G66V 0.30 deleterious(0.01) probably_damaging(1) TCGA-05-4405-01 1 207751547 207751547 G T CR1 Missense_Mutation p.R1645S 0.07 deleterious(0.01) possibly_damaging(0.562) TCGA-05-4405-01 1 216850615 216850615 C - ESRRG Frame_Shift_Del p.G97Efs*38 0.24 TCGA-05-4405-01 1 229779310 229779310 A T URB2 Missense_Mutation p.D1222V 0.04 deleterious(0.01) benign(0.178) TCGA-05-4405-01 1 232581492 232581492 T C SIPA1L2 Missense_Mutation p.K1046E 0.26 deleterious(0) probably_damaging(0.995) TCGA-05-4405-01 1 235628937 235628937 C T B3GALNT2 Intron 0.04 TCGA-05-4405-01 1 235922575 235922575 C - LYST Frame_Shift_Del p.G2193Efs*38 0.22 TCGA-05-4405-01 1 237167616 237167616 G T MT1HL1 Nonsense_Mutation p.C19* 0.29 TCGA-05-4405-01 1 237167617 237167617 C T MT1HL1 Missense_Mutation p.C19Y 0.28 deleterious(0.03) unknown(0) TCGA-05-4405-01 1 237656311 237656311 C A RYR2 Missense_Mutation p.Q629K 0.29 possibly_damaging(0.455) TCGA-05-4405-01 1 237951363 237951363 C A RYR2 Missense_Mutation p.H4468Q 0.33 benign(0.001) TCGA-05-4405-01 1 242511434 242511434 T A PLD5 Silent p.S100S 0.07 TCGA-05-4405-01 1 244643077 244643077 A G C1orf101 Missense_Mutation p.Y106C 0.09 tolerated(0.05) benign(0.052) TCGA-05-4405-01 1 247769209 247769209 G T OR2G3 Missense_Mutation p.G108C 0.30 deleterious(0) probably_damaging(1) TCGA-05-4405-01 1 247875457 247875457 C G OR6F1 Missense_Mutation p.V201L 0.14 tolerated(0.72) benign(0.006) TCGA-05-4405-01 1 248436320 248436320 G T OR2T33 Missense_Mutation p.T266N 0.29 deleterious(0) benign(0.405) TCGA-05-4405-01 1 25627475 25627475 C A RHD Missense_Mutation p.F175L 0.14 deleterious(0.02) probably_damaging(1) TCGA-05-4405-01 1 2938683 2938683 G A ACTRT2 Missense_Mutation p.A145T 0.11 tolerated(0.06) possibly_damaging(0.654) TCGA-05-4405-01 1 34258067 34258067 C T CSMD2 Missense_Mutation p.G463S 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-05-4405-01 1 46658031 46658031 C T POMGNT1 Silent p.R454R 0.11 TCGA-05-4405-01 1 54417792 54417792 G T LRRC42 Missense_Mutation p.K40N 0.30 tolerated(0.25) benign(0.003) TCGA-05-4405-01 1 57257990 57257990 C A C1orf168 Missense_Mutation p.A166S 0.05 tolerated(0.15) benign(0.048) TCGA-05-4405-01 1 6631143 6631143 A T TAS1R1 Silent p.P122P 0.08 TCGA-05-4405-01 1 66713283 66713283 A T PDE4B Missense_Mutation p.D141V 0.15 deleterious(0) probably_damaging(0.999) TCGA-05-4405-01 1 78098198 78098198 T C ZZZ3 Missense_Mutation p.K281R 0.37 tolerated_low_confidence(0.35) benign(0.002) TCGA-05-4405-01 1 89846073 89846073 G A GBP6 Missense_Mutation p.V252M 0.11 tolerated(0.2) benign(0.257) TCGA-05-4405-01 1 93131509 93131509 T A EVI5 Missense_Mutation p.E444V 0.13 deleterious(0) benign(0.053) TCGA-05-4405-01 1 9416498 9416499 - G SPSB1 Frame_Shift_Ins p.D184Gfs*38 0.11 TCGA-05-4405-01 1 97981448 97981448 T C DPYD Missense_Mutation p.Y525C 0.35 tolerated(0.06) benign(0.007) TCGA-05-4405-01 20 1903223 1903223 C T SIRPA Missense_Mutation p.A340V 0.26 tolerated(0.11) benign(0.011) TCGA-05-4405-01 20 20563737 20563737 A C RALGAPA2 Silent p.R888R 0.08 TCGA-05-4405-01 20 3215504 3215504 G T SLC4A11 Missense_Mutation p.A85D 0.32 tolerated(0.44) benign(0.211) TCGA-05-4405-01 20 33516594 33516594 T C GSS 3'UTR 0.15 TCGA-05-4405-01 20 43836993 43836993 G A SEMG1 Missense_Mutation p.S352N 0.12 tolerated(0.09) probably_damaging(0.994) TCGA-05-4405-01 20 44506100 44506100 C T ZSWIM3 Silent p.A301A 0.12 TCGA-05-4405-01 20 4776594 4776594 C A RASSF2 Missense_Mutation p.V52L 0.23 tolerated(0.23) benign(0.104) TCGA-05-4405-01 20 55208437 55208437 G T TFAP2C Silent p.L205L 0.13 TCGA-05-4405-01 20 60499428 60499428 C T CDH4 Silent p.H555H 0.08 TCGA-05-4405-01 20 61834123 61834123 C G YTHDF1 Missense_Mutation p.R390P 0.30 deleterious(0) probably_damaging(0.998) TCGA-05-4405-01 20 8719992 8719992 C A PLCB1 Missense_Mutation p.Q765K 0.06 tolerated(0.14) benign(0.001) TCGA-05-4405-01 20 9546642 9546642 G T PAK7 Silent p.T460T 0.04 TCGA-05-4405-01 21 11039132 11039132 C A BAGE2 RNA 0.03 TCGA-05-4405-01 21 27071084 27071084 C A JAM2 Missense_Mutation p.P164T 0.38 tolerated(0.09) benign(0.23) TCGA-05-4405-01 21 31986019 31986019 A T KRTAP6-1 Missense_Mutation p.Y69N 0.14 unknown(0) TCGA-05-4405-01 21 32253732 32253732 C A KRTAP11-1 Missense_Mutation p.G38C 0.36 deleterious(0.01) possibly_damaging(0.701) TCGA-05-4405-01 21 32639219 32639219 T G TIAM1 Missense_Mutation p.K24Q 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-05-4405-01 21 34136681 34136681 A C PAXBP1 Silent p.S209S 0.16 TCGA-05-4405-01 22 21174084 21174084 T C PI4KA Missense_Mutation p.I212V 0.30 tolerated(0.32) benign(0.001) TCGA-05-4405-01 22 38962738 38962738 C T DMC1 Missense_Mutation p.V34M 0.08 tolerated(0.13) benign(0.014) TCGA-05-4405-01 22 39811578 39811578 C G TAB1 Missense_Mutation p.Q82E 0.34 deleterious(0.04) benign(0.01) TCGA-05-4405-01 22 41790242 41790242 C G TEF Missense_Mutation p.H206Q 0.13 tolerated(0.11) benign(0.036) TCGA-05-4405-01 2 100623335 100623335 T G AFF3 Missense_Mutation p.H236P 0.03 deleterious(0.04) probably_damaging(0.999) TCGA-05-4405-01 2 105859317 105859317 C A GPR45 Silent p.A334A 0.10 TCGA-05-4405-01 2 107460416 107460416 C A ST6GAL2 Missense_Mutation p.K6N 0.36 probably_damaging(0.974) TCGA-05-4405-01 2 108489238 108489238 C G RGPD4 Missense_Mutation p.S1593C 0.03 deleterious_low_confidence(0.01) benign(0.009) TCGA-05-4405-01 2 132235910 132235910 C A TUBA3D Silent p.G59G 0.44 TCGA-05-4405-01 2 139429037 139429037 G T NXPH2 Missense_Mutation p.L84M 0.51 deleterious(0.02) probably_damaging(0.99) TCGA-05-4405-01 2 141274503 141274503 C T LRP1B Missense_Mutation p.D2702N 0.07 possibly_damaging(0.831) TCGA-05-4405-01 2 141707905 141707905 C G LRP1B Missense_Mutation p.R1012T 0.17 possibly_damaging(0.899) TCGA-05-4405-01 2 1499813 1499813 G T TPO Nonsense_Mutation p.E687* 0.33 TCGA-05-4405-01 2 15417165 15417165 C A NBAS Missense_Mutation p.K1733N 0.06 tolerated(0.11) benign(0.303) TCGA-05-4405-01 2 15567913 15567913 T C NBAS Missense_Mutation p.N782S 0.10 tolerated(0.71) benign(0.003) TCGA-05-4405-01 2 167142874 167142874 T G SCN9A Missense_Mutation p.H525P 0.04 tolerated(0.18) benign(0.265) TCGA-05-4405-01 2 167760365 167760365 A G XIRP2 Missense_Mutation p.K125E 0.08 benign(0.167) TCGA-05-4405-01 2 172952820 172952820 C T DLX1 Silent p.N201N 0.16 TCGA-05-4405-01 2 179441915 179441915 G A TTN Silent p.I23049I 0.15 TCGA-05-4405-01 2 179567252 179567252 T C TTN Missense_Mutation p.Q10121R 0.03 TCGA-05-4405-01 2 189910587 189910587 C A COL5A2 Missense_Mutation p.G1083V 0.34 unknown(0) TCGA-05-4405-01 2 206614460 206614460 A G NRP2 Missense_Mutation p.T600A 0.12 tolerated(0.57) probably_damaging(0.993) TCGA-05-4405-01 2 207171353 207171353 T G ZDBF2 Missense_Mutation p.S701A 0.07 deleterious(0.03) benign(0.355) TCGA-05-4405-01 2 211456608 211456608 C A CPS1 Missense_Mutation p.A340D 0.10 deleterious(0) possibly_damaging(0.502) TCGA-05-4405-01 2 220397160 220397160 G A ASIC4 Missense_Mutation p.V454M 0.10 deleterious(0) probably_damaging(0.965) TCGA-05-4405-01 2 233103338 233103338 G T DIS3L2 Missense_Mutation p.V434F 0.38 deleterious(0) probably_damaging(0.982) TCGA-05-4405-01 2 233323382 233323382 G T ALPI Silent p.T408T 0.45 TCGA-05-4405-01 2 234526902 234526902 C T UGT1A8 Silent p.C183C 0.10 TCGA-05-4405-01 2 234581299 234581299 C G UGT1A9 Missense_Mutation p.T240R 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-05-4405-01 2 234652434 234652434 C A UGT1A10 Intron 0.08 TCGA-05-4405-01 2 238285946 238285946 T C COL6A3 Missense_Mutation p.N847D 0.48 probably_damaging(1) TCGA-05-4405-01 2 241622288 241622288 G A AQP12B 5'UTR 0.25 TCGA-05-4405-01 2 24933898 24933898 G A NCOA1 Silent p.A839A 0.35 TCGA-05-4405-01 2 26798827 26798827 C A C2orf70 Silent p.T44T 0.13 TCGA-05-4405-01 2 27600625 27600625 G A ZNF513 Silent p.P471P 0.32 TCGA-05-4405-01 2 29092772 29092772 C A TRMT61B Missense_Mutation p.M124I 0.34 tolerated(0.23) benign(0.006) TCGA-05-4405-01 2 33525618 33525618 G A LTBP1 Silent p.S1112S 0.12 TCGA-05-4405-01 2 47251456 47251456 G T TTC7A Missense_Mutation p.Q533H 0.30 tolerated(0.05) benign(0.248) TCGA-05-4405-01 2 75117984 75117984 C T HK2 Silent p.F890F 0.14 TCGA-05-4405-01 2 89265930 89265930 G T IGKV1-6 Missense_Mutation p.L68I 0.15 deleterious(0.01) benign(0.178) TCGA-05-4405-01 2 89513367 89513367 G A IGKV1-27 Missense_Mutation p.P6S 0.14 tolerated(0.05) benign(0.256) TCGA-05-4405-01 2 89952919 89952919 G T IGKV1D-33 Silent p.L13L 0.34 TCGA-05-4405-01 2 96860740 96860740 C G STARD7 Missense_Mutation p.G169R 0.33 deleterious(0) probably_damaging(0.999) TCGA-05-4405-01 3 126220156 126220156 C A UROC1 Splice_Site p.X351_splice 0.12 TCGA-05-4405-01 3 131388541 131388541 C A CPNE4 Missense_Mutation p.G220V 0.31 deleterious(0.02) benign(0.185) TCGA-05-4405-01 3 131388542 131388542 C A CPNE4 Nonsense_Mutation p.G220* 0.31 TCGA-05-4405-01 3 140401341 140401341 C A TRIM42 Missense_Mutation p.Q127K 0.27 tolerated(0.62) benign(0.021) TCGA-05-4405-01 3 17208305 17208305 C A TBC1D5 Missense_Mutation p.G705V 0.27 tolerated_low_confidence(0.25) benign(0.001) TCGA-05-4405-01 3 17299997 17299997 C A TBC1D5 Splice_Site p.X444_splice 0.22 TCGA-05-4405-01 3 180377471 180377471 G T CCDC39 Missense_Mutation p.S201R 0.07 deleterious(0.01) probably_damaging(0.911) TCGA-05-4405-01 3 19575253 19575253 T A KCNH8 Missense_Mutation p.S996T 0.05 tolerated_low_confidence(0.19) benign(0.02) TCGA-05-4405-01 3 19938246 19938246 T C EFHB Missense_Mutation p.H553R 0.23 tolerated(0.05) benign(0.027) TCGA-05-4405-01 3 33134917 33134917 C T TMPPE Silent p.T257T 0.05 TCGA-05-4405-01 3 44496938 44496938 T C ZNF445 Missense_Mutation p.Y35C 0.25 tolerated_low_confidence(0.08) possibly_damaging(0.759) TCGA-05-4405-01 3 447225 447225 G T CHL1 Missense_Mutation p.R1169M 0.15 tolerated(0.06) benign(0.328) TCGA-05-4405-01 3 447226 447226 G T CHL1 Missense_Mutation p.R1169S 0.14 tolerated(0.36) possibly_damaging(0.713) TCGA-05-4405-01 3 48459666 48459666 C A PLXNB1 Silent p.V1052V 0.18 TCGA-05-4405-01 3 49161443 49161443 C A LAMB2 Missense_Mutation p.R1172L 0.16 deleterious(0) probably_damaging(1) TCGA-05-4405-01 3 51475837 51475837 C A VPRBP Missense_Mutation p.S197I 0.24 tolerated(0.06) benign(0.116) TCGA-05-4405-01 3 52236729 52236729 G T ALAS1 Nonsense_Mutation p.E136* 0.22 TCGA-05-4405-01 3 57311911 57311911 A T ASB14 Missense_Mutation p.L490H 0.17 deleterious(0.01) possibly_damaging(0.495) TCGA-05-4405-01 3 66502041 66502041 C A LRIG1 Nonsense_Mutation p.E103* 0.18 TCGA-05-4405-01 3 71015118 71015118 T C FOXP1 Silent p.E606E 0.06 TCGA-05-4405-01 3 73432636 73432636 C A PDZRN3 Missense_Mutation p.K1027N 0.24 deleterious(0) probably_damaging(0.992) TCGA-05-4405-01 3 77147283 77147283 C T ROBO2 Silent p.P76P 0.24 TCGA-05-4405-01 3 77542523 77542523 C G ROBO2 Missense_Mutation p.P282A 0.13 deleterious(0.01) possibly_damaging(0.822) TCGA-05-4405-01 3 98072805 98072805 G T OR5K4 Silent p.L36L 0.05 TCGA-05-4405-01 3 98188738 98188738 T A OR5K1 Silent p.T106T 0.09 TCGA-05-4405-01 4 114176923 114176923 G T ANK2 Missense_Mutation p.Q341H 0.15 possibly_damaging(0.906) TCGA-05-4405-01 4 123274259 123274259 G C KIAA1109 Missense_Mutation p.E4684Q 0.26 probably_damaging(0.995) TCGA-05-4405-01 4 123275152 123275152 T C KIAA1109 Missense_Mutation p.V4762A 0.15 benign(0.094) TCGA-05-4405-01 4 126241342 126241342 C G FAT4 Missense_Mutation p.A1259G 0.14 benign(0.155) TCGA-05-4405-01 4 13605874 13605874 C A BOD1L1 Missense_Mutation p.D884Y 0.13 probably_damaging(0.982) TCGA-05-4405-01 4 154523459 154523459 G T KIAA0922 Missense_Mutation p.D808Y 0.16 deleterious(0.01) possibly_damaging(0.69) TCGA-05-4405-01 4 155219801 155219801 G T DCHS2 Missense_Mutation p.R1434S 0.05 deleterious(0.02) benign(0.344) TCGA-05-4405-01 4 155527940 155527940 T A FGG Missense_Mutation p.E349V 0.13 deleterious(0.03) possibly_damaging(0.64) TCGA-05-4405-01 4 158238855 158238855 G A GRIA2 Missense_Mutation p.A238T 0.23 tolerated(0.13) probably_damaging(0.972) TCGA-05-4405-01 4 167675580 167675580 C G SPOCK3 Intron 0.24 TCGA-05-4405-01 4 169837113 169837113 C T PALLD Missense_Mutation p.H929Y 0.23 tolerated(0.21) probably_damaging(0.986) TCGA-05-4405-01 4 186231802 186231802 G T SNX25 Silent p.A228A 0.16 TCGA-05-4405-01 4 187524791 187524791 T C FAT1 Missense_Mutation p.H3630R 0.25 benign(0.025) TCGA-05-4405-01 4 187557736 187557736 C G FAT1 Intron 0.13 TCGA-05-4405-01 4 22389516 22389516 T C GPR125 Missense_Mutation p.T1260A 0.15 tolerated(0.25) benign(0) TCGA-05-4405-01 4 23814457 23814457 C G PPARGC1A Missense_Mutation p.R644S 0.15 deleterious(0.01) unknown(0) TCGA-05-4405-01 4 25125605 25125605 G C SEPSECS Missense_Mutation p.A485G 0.20 tolerated_low_confidence(0.19) benign(0) TCGA-05-4405-01 4 39207199 39207199 A T WDR19 Missense_Mutation p.I245F 0.16 deleterious(0) possibly_damaging(0.899) TCGA-05-4405-01 4 46979500 46979500 C T GABRA4 Missense_Mutation p.V141I 0.14 tolerated(1) benign(0.074) TCGA-05-4405-01 4 619514 619514 C A PDE6B Silent p.A33A 0.22 TCGA-05-4405-01 4 62845477 62845477 G A LPHN3 Missense_Mutation p.R933Q 0.10 tolerated(0.47) benign(0.31) TCGA-05-4405-01 4 66189812 66189812 G A EPHA5 3'UTR 0.11 TCGA-05-4405-01 4 66467644 66467644 C A EPHA5 Nonsense_Mutation p.G209* 0.06 TCGA-05-4405-01 4 66467645 66467645 C G EPHA5 Missense_Mutation p.K208N 0.06 tolerated(0.25) possibly_damaging(0.783) TCGA-05-4405-01 4 69107500 69107500 A T TMPRSS11B Missense_Mutation p.S11T 0.04 deleterious(0.05) benign(0.272) TCGA-05-4405-01 4 69362415 69362415 G T TMPRSS11E Missense_Mutation p.A389S 0.14 deleterious(0) possibly_damaging(0.846) TCGA-05-4405-01 4 7435591 7435591 A T PSAPL1 Nonsense_Mutation p.L339* 0.29 TCGA-05-4405-01 4 78081897 78081897 C T CCNG2 Silent p.C100C 0.04 TCGA-05-4405-01 4 79512740 79512740 C G ANXA3 Missense_Mutation p.S149C 0.13 deleterious(0) probably_damaging(0.955) TCGA-05-4405-01 4 83799966 83799966 T A SEC31A Missense_Mutation p.I107L 0.17 tolerated(1) benign(0.001) TCGA-05-4405-01 4 94690490 94690490 C A GRID2 Missense_Mutation p.S830R 0.26 deleterious(0) probably_damaging(0.995) TCGA-05-4405-01 5 1037955 1037955 G T NKD2 Missense_Mutation p.G275C 0.28 deleterious(0.04) probably_damaging(0.973) TCGA-05-4405-01 5 126887380 126887380 C G PRRC1 Intron 0.07 TCGA-05-4405-01 5 127681130 127681130 T C FBN2 Missense_Mutation p.K1046E 0.09 tolerated(0.3) benign(0.012) TCGA-05-4405-01 5 13820510 13820510 C G DNAH5 Silent p.G2262G 0.30 TCGA-05-4405-01 5 140531776 140531776 C A PCDHB6 Silent p.G646G 0.22 TCGA-05-4405-01 5 140562573 140562573 C A PCDHB16 Missense_Mutation p.P147T 0.32 tolerated_low_confidence(0.52) possibly_damaging(0.904) TCGA-05-4405-01 5 140589769 140589769 G T PCDHB12 Missense_Mutation p.R430S 0.10 deleterious_low_confidence(0.04) possibly_damaging(0.718) TCGA-05-4405-01 5 140711266 140711266 G A PCDHGA1 Missense_Mutation p.D339N 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-05-4405-01 5 140730903 140730903 G T PCDHGB1 Missense_Mutation p.G359V 0.47 deleterious(0) probably_damaging(0.993) TCGA-05-4405-01 5 14482705 14482705 C T TRIO Silent p.A2160A 0.36 TCGA-05-4405-01 5 147493975 147493975 C A SPINK5 Nonsense_Mutation p.C646* 0.10 TCGA-05-4405-01 5 150311160 150311160 C A ZNF300P1 RNA 0.18 TCGA-05-4405-01 5 151051154 151051154 G T SPARC Missense_Mutation p.P104T 0.04 tolerated(0.58) benign(0.002) TCGA-05-4405-01 5 169141163 169141163 G T DOCK2 Silent p.R597R 0.23 TCGA-05-4405-01 5 169509853 169509853 G A DOCK2 Silent p.T1828T 0.21 TCGA-05-4405-01 5 23510114 23510114 A T PRDM9 Missense_Mutation p.E93D 0.17 tolerated_low_confidence(0.08) benign(0.018) TCGA-05-4405-01 5 24487878 24487878 C A CDH10 Missense_Mutation p.G754V 0.22 tolerated(0.84) benign(0.002) TCGA-05-4405-01 5 31299613 31299613 G A CDH6 Missense_Mutation p.R229K 0.17 tolerated(1) benign(0.001) TCGA-05-4405-01 5 33658393 33658393 G T ADAMTS12 Silent p.G362G 0.16 TCGA-05-4405-01 5 33937505 33937505 G C RXFP3 Missense_Mutation p.W220C 0.16 deleterious(0.02) benign(0) TCGA-05-4405-01 5 33964062 33964062 C A SLC45A2 Nonsense_Mutation p.G208* 0.21 TCGA-05-4405-01 5 36251594 36251594 G T RANBP3L Missense_Mutation p.A417D 0.20 deleterious(0) probably_damaging(0.918) TCGA-05-4405-01 5 71491553 71491553 G T MAP1B Missense_Mutation p.A791S 0.09 unknown(0) TCGA-05-4405-01 5 75597285 75597285 A T SV2C Missense_Mutation p.M639L 0.05 tolerated(1) benign(0.027) TCGA-05-4405-01 5 98128880 98128880 G A RGMB Missense_Mutation p.G287D 0.07 deleterious(0) probably_damaging(1) TCGA-05-4405-01 6 116988239 116988239 C G ZUFSP Silent p.V39V 0.33 TCGA-05-4405-01 6 117861841 117861841 G T DCBLD1 Missense_Mutation p.G371V 0.10 deleterious(0) probably_damaging(0.979) TCGA-05-4405-01 6 132211593 132211593 C T ENPP1 Missense_Mutation p.P907L 0.32 deleterious(0.01) possibly_damaging(0.616) TCGA-05-4405-01 6 138199923 138199923 G T TNFAIP3 Silent p.A447A 0.33 TCGA-05-4405-01 6 139167715 139167715 A G ECT2L Silent p.S268S 0.06 TCGA-05-4405-01 6 160494947 160494947 C T IGF2R Silent p.H1702H 0.15 TCGA-05-4405-01 6 165827065 165827065 C G PDE10A Missense_Mutation p.S401T 0.29 tolerated(0.36) benign(0.047) TCGA-05-4405-01 6 17837141 17837141 C T KIF13A Missense_Mutation p.E375K 0.08 deleterious(0.02) probably_damaging(0.995) TCGA-05-4405-01 6 27791994 27791994 C A HIST1H4J Missense_Mutation p.T31N 0.34 deleterious(0) possibly_damaging(0.869) TCGA-05-4405-01 6 35260373 35260373 G A ZNF76 Missense_Mutation p.R325H 0.17 deleterious(0.01) possibly_damaging(0.863) TCGA-05-4405-01 6 40399507 40399507 A C LRFN2 Missense_Mutation p.V449G 0.31 deleterious(0) benign(0.143) TCGA-05-4405-01 6 46794188 46794188 G A MEP1A Silent p.Q292Q 0.18 TCGA-05-4405-01 6 50718973 50718973 C A TFAP2D Missense_Mutation p.L359M 0.44 deleterious(0) probably_damaging(0.968) TCGA-05-4405-01 6 75898142 75898142 C A COL12A1 Missense_Mutation p.E311D 0.28 probably_damaging(0.996) TCGA-05-4405-01 6 83748197 83748197 T A UBE3D Missense_Mutation p.K202M 0.24 deleterious(0) probably_damaging(0.928) TCGA-05-4405-01 6 90039587 90039587 C A UBE2J1 Silent p.R256R 0.42 TCGA-05-4405-01 7 100364781 100364781 C T ZAN Silent p.N1587N 0.06 TCGA-05-4405-01 7 100773778 100773779 CA - SERPINE1 Frame_Shift_Del p.T117Rfs*44 0.28 TCGA-05-4405-01 7 105662683 105662683 G T CDHR3 Missense_Mutation p.G622V 0.23 deleterious(0) probably_damaging(1) TCGA-05-4405-01 7 107752392 107752392 C A LAMB4 Splice_Site p.X65_splice 0.20 TCGA-05-4405-01 7 107756565 107756565 C A LAMB4 Missense_Mutation p.G26C 0.18 deleterious(0) possibly_damaging(0.794) TCGA-05-4405-01 7 120704291 120704291 G T CPED1 Splice_Site p.X181_splice 0.24 TCGA-05-4405-01 7 14188795 14188795 G T DGKB Nonsense_Mutation p.C792* 0.30 TCGA-05-4405-01 7 142168637 142168637 T A TRBV5-4 Missense_Mutation p.H29L 0.23 deleterious(0) benign(0.343) TCGA-05-4405-01 7 143080351 143080351 G T ZYX Missense_Mutation p.R320M 0.28 tolerated(0.1) possibly_damaging(0.784) TCGA-05-4405-01 7 143080397 143080397 G C ZYX Silent p.P335P 0.21 TCGA-05-4405-01 7 143792543 143792543 G T OR2A12 Missense_Mutation p.V115L 0.30 tolerated(0.08) benign(0.013) TCGA-05-4405-01 7 143826593 143826593 C T OR2A14 Missense_Mutation p.R130C 0.04 deleterious(0) possibly_damaging(0.807) TCGA-05-4405-01 7 150163825 150163825 C A GIMAP8 Silent p.L13L 0.30 TCGA-05-4405-01 7 158468339 158468339 C A NCAPG2 Nonsense_Mutation p.E386* 0.22 TCGA-05-4405-01 7 35271187 35271187 C T TBX20 Silent p.T273T 0.25 TCGA-05-4405-01 7 43590144 43590144 G A HECW1 Missense_Mutation p.R1450H 0.28 deleterious(0.01) possibly_damaging(0.779) TCGA-05-4405-01 7 43594285 43594285 G A HECW1 Silent p.T1535T 0.34 TCGA-05-4405-01 7 70231185 70231185 C G AUTS2 Silent p.P518P 0.24 TCGA-05-4405-01 7 75052311 75052311 G A POM121C Silent p.A408A 0.24 TCGA-05-4405-01 7 87011309 87011309 G T CROT Missense_Mutation p.K382N 0.23 deleterious(0.05) benign(0.417) TCGA-05-4405-01 7 94054501 94054501 G T COL1A2 Nonsense_Mutation p.G916* 0.24 TCGA-05-4405-01 7 94057055 94057055 C A COL1A2 Silent p.L1128L 0.20 TCGA-05-4405-01 7 97481664 97481664 G A ASNS Silent p.D531D 0.22 TCGA-05-4405-01 7 97800896 97800896 G - LMTK2 Frame_Shift_Del p.D236Tfs*31 0.22 TCGA-05-4405-01 7 98602013 98602013 A T TRRAP Missense_Mutation p.T3490S 0.21 benign(0) TCGA-05-4405-01 7 99956683 99956683 C T PILRB Silent p.T145T 0.29 TCGA-05-4405-01 8 101196189 101196189 A T SPAG1 Missense_Mutation p.D165V 0.29 deleterious(0) probably_damaging(0.992) TCGA-05-4405-01 8 101612589 101612589 G T SNX31 Missense_Mutation p.D254E 0.04 tolerated(1) benign(0.002) TCGA-05-4405-01 8 105025733 105025733 C A RIMS2 Silent p.L1036L 0.38 TCGA-05-4405-01 8 105025734 105025734 C A RIMS2 Missense_Mutation p.L1037I 0.36 tolerated_low_confidence(0.26) possibly_damaging(0.561) TCGA-05-4405-01 8 110431379 110431379 G T PKHD1L1 Missense_Mutation p.G805V 0.14 deleterious(0.01) probably_damaging(0.972) TCGA-05-4405-01 8 113668560 113668560 C A CSMD3 Nonsense_Mutation p.E943* 0.12 TCGA-05-4405-01 8 11606502 11606502 G T GATA4 Missense_Mutation p.D231Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-05-4405-01 8 125076699 125076699 C A FER1L6 Missense_Mutation p.P1147H 0.39 deleterious(0.02) benign(0.176) TCGA-05-4405-01 8 130891660 130891660 C A FAM49B Silent p.G16G 0.11 TCGA-05-4405-01 8 131848677 131848677 C - ADCY8 Frame_Shift_Del p.V841Cfs*5 0.09 TCGA-05-4405-01 8 133650267 133650267 G A LRRC6 Silent p.L115L 0.29 TCGA-05-4405-01 8 144811484 144811484 C T FAM83H Missense_Mutation p.V153M 0.07 deleterious(0) probably_damaging(0.936) TCGA-05-4405-01 8 1497404 1497404 G C DLGAP2 Missense_Mutation p.R182P 0.13 deleterious(0.05) possibly_damaging(0.744) TCGA-05-4405-01 8 1616686 1616686 G T DLGAP2 Missense_Mutation p.D588Y 0.58 deleterious(0) probably_damaging(0.954) TCGA-05-4405-01 8 195623 195623 C A ZNF596 Missense_Mutation p.A259D 0.11 deleterious(0.02) probably_damaging(0.939) TCGA-05-4405-01 8 2026987 2026987 G C MYOM2 Missense_Mutation p.D479H 0.04 deleterious(0) probably_damaging(0.977) TCGA-05-4405-01 8 27922222 27922222 G A NUGGC Silent p.D246D 0.47 TCGA-05-4405-01 8 30669865 30669865 C G PPP2CB Missense_Mutation p.E25Q 0.13 deleterious(0) possibly_damaging(0.727) TCGA-05-4405-01 8 30706087 30706087 A T TEX15 Nonsense_Mutation p.C149* 0.35 TCGA-05-4405-01 8 33451145 33451145 C G DUSP26 Silent p.L114L 0.33 TCGA-05-4405-01 8 35631950 35631950 A G UNC5D Missense_Mutation p.K871R 0.12 tolerated(1) probably_damaging(0.959) TCGA-05-4405-01 8 70971045 70971045 C A PRDM14 Missense_Mutation p.G406W 0.16 deleterious(0) probably_damaging(0.998) TCGA-05-4405-01 8 77765759 77765759 C T ZFHX4 Missense_Mutation p.T2201M 0.04 probably_damaging(0.995) TCGA-05-4405-01 8 77776250 77776250 G T ZFHX4 Missense_Mutation p.D3434Y 0.23 probably_damaging(0.998) TCGA-05-4405-01 8 82606414 82606414 C A SLC10A5 Missense_Mutation p.G265V 0.17 tolerated(0.23) possibly_damaging(0.767) TCGA-05-4405-01 8 82606415 82606415 C A SLC10A5 Missense_Mutation p.G265C 0.17 tolerated(0.1) benign(0.096) TCGA-05-4405-01 8 95653542 95653542 T C ESRP1 5'UTR 0.37 TCGA-05-4405-01 9 100056343 100056343 C T CCDC180 5'UTR 0.05 TCGA-05-4405-01 9 101148007 101148007 C T GABBR2 Missense_Mutation p.G526E 0.07 deleterious(0) probably_damaging(1) TCGA-05-4405-01 9 101907147 101907147 A G TGFBR1 Silent p.P369P 0.08 TCGA-05-4405-01 9 104189909 104189909 G C ALDOB Nonsense_Mutation p.S132* 0.19 TCGA-05-4405-01 9 107589339 107589339 C T ABCA1 Missense_Mutation p.A743T 0.19 deleterious(0) possibly_damaging(0.525) TCGA-05-4405-01 9 125315473 125315473 T A OR1N2 Missense_Mutation p.S9T 0.27 tolerated_low_confidence(0.21) benign(0.004) TCGA-05-4405-01 9 133799190 133799190 G T FIBCD1 Missense_Mutation p.H264N 0.20 tolerated(0.15) possibly_damaging(0.604) TCGA-05-4405-01 9 133962991 133962991 G C LAMC3 Missense_Mutation p.E1453D 0.23 tolerated(0.44) benign(0.009) TCGA-05-4405-01 9 135357700 135357700 G T C9orf171 Missense_Mutation p.A67S 0.22 tolerated_low_confidence(0.84) benign(0) TCGA-05-4405-01 9 135374112 135374112 T A C9orf171 Missense_Mutation p.Y112N 0.24 tolerated(0.22) benign(0.148) TCGA-05-4405-01 9 136582532 136582532 C A SARDH Missense_Mutation p.V356L 0.15 tolerated(0.06) possibly_damaging(0.86) TCGA-05-4405-01 9 140638453 140638453 G T EHMT1 Missense_Mutation p.G361C 0.19 tolerated_low_confidence(0.05) possibly_damaging(0.648) TCGA-05-4405-01 9 140870356 140870356 T C CACNA1B Intron 0.19 TCGA-05-4405-01 9 33386153 33386153 G A AQP7 Silent p.T149T 0.12 TCGA-05-4405-01 9 34627776 34627776 C A ARID3C Missense_Mutation p.G79V 0.38 deleterious(0.02) benign(0.186) TCGA-05-4405-01 9 43627706 43627706 G A SPATA31A6 Silent p.V327V 0.05 TCGA-05-4405-01 9 77377953 77377953 G A TRPM6 Nonsense_Mutation p.Q1212* 0.18 TCGA-05-4405-01 9 84605870 84605870 C T SPATA31D1 Missense_Mutation p.S162L 0.19 deleterious(0) benign(0.051) TCGA-05-4405-01 9 84609108 84609108 C A SPATA31D1 Silent p.S1241S 0.17 TCGA-05-4405-01 X 101152922 101152922 C T ZMAT1 Missense_Mutation p.G142R 0.18 deleterious(0.03) possibly_damaging(0.867) TCGA-05-4405-01 X 101912716 101912716 C A GPRASP1 Missense_Mutation p.T1292K 0.06 deleterious(0) probably_damaging(0.999) TCGA-05-4405-01 X 106171887 106171887 C A CLDN2 Silent p.I143I 0.13 TCGA-05-4405-01 X 107976663 107976663 G A IRS4 Missense_Mutation p.P971L 0.10 deleterious(0) unknown(0) TCGA-05-4405-01 X 110987964 110987964 C A ALG13 Missense_Mutation p.P922T 0.27 tolerated(0.68) benign(0.002) TCGA-05-4405-01 X 11316980 11316980 C G AMELX Missense_Mutation p.P167A 0.22 tolerated(0.83) unknown(0) TCGA-05-4405-01 X 114422812 114422812 C T LRCH2 Silent p.Q157Q 0.20 TCGA-05-4405-01 X 117677516 117677516 A T DOCK11 Nonsense_Mutation p.K118* 0.17 TCGA-05-4405-01 X 117742200 117742200 T A DOCK11 Missense_Mutation p.F920I 0.07 deleterious(0.01) benign(0.227) TCGA-05-4405-01 X 123615651 123615651 G A TENM1 Missense_Mutation p.L1294F 0.06 tolerated(0.05) probably_damaging(0.975) TCGA-05-4405-01 X 124097540 124097540 T C TENM1 Silent p.L21L 0.11 TCGA-05-4405-01 X 125298847 125298847 C A DCAF12L2 Missense_Mutation p.R354L 0.35 deleterious(0.01) benign(0.424) TCGA-05-4405-01 X 125686610 125686610 G T DCAF12L1 5'UTR 0.18 TCGA-05-4405-01 X 129054695 129054695 G A UTP14A Silent p.K307K 0.07 TCGA-05-4405-01 X 129771317 129771317 G T ENOX2 Nonsense_Mutation p.Y428* 0.11 TCGA-05-4405-01 X 132162134 132162134 C A USP26 Missense_Mutation p.V39L 0.11 tolerated(0.05) benign(0.039) TCGA-05-4405-01 X 132548853 132548853 G A GPC4 Silent p.A47A 0.06 TCGA-05-4405-01 X 135430448 135430448 T A GPR112 Missense_Mutation p.V1528D 0.05 deleterious(0) possibly_damaging(0.691) TCGA-05-4405-01 X 135445641 135445641 T A GPR112 Missense_Mutation p.I2428N 0.11 deleterious(0) possibly_damaging(0.628) TCGA-05-4405-01 X 144904509 144904509 G - SLITRK2 Frame_Shift_Del p.N191Ifs*3 0.10 TCGA-05-4405-01 X 152734677 152734677 G T HAUS7 Missense_Mutation p.P61T 0.10 deleterious(0.01) probably_damaging(1) TCGA-05-4405-01 X 152770113 152770113 G T BGN Silent p.V8V 0.37 TCGA-05-4405-01 X 152770114 152770114 T A BGN Missense_Mutation p.S9T 0.38 tolerated(0.43) benign(0.007) TCGA-05-4405-01 X 152806953 152806953 G T ATP2B3 Missense_Mutation p.E115D 0.32 tolerated(0.14) probably_damaging(0.985) TCGA-05-4405-01 X 153051701 153051701 C A IDH3G Missense_Mutation p.R349L 0.10 tolerated(0.07) possibly_damaging(0.719) TCGA-05-4405-01 X 153128312 153128312 A T L1CAM Missense_Mutation p.S1194T 0.14 deleterious(0) probably_damaging(0.976) TCGA-05-4405-01 X 153130448 153130448 C A L1CAM Silent p.L958L 0.05 TCGA-05-4405-01 X 153132929 153132929 G T L1CAM Silent p.T673T 0.08 TCGA-05-4405-01 X 153136381 153136381 C A L1CAM Silent p.T186T 0.11 TCGA-05-4405-01 X 153420135 153420135 T A OPN1LW Missense_Mutation p.V222D 0.05 deleterious(0.02) possibly_damaging(0.826) TCGA-05-4405-01 X 153678642 153678642 C A FAM50A Missense_Mutation p.P329H 0.11 deleterious(0) probably_damaging(0.999) TCGA-05-4405-01 X 153735087 153735087 C A FAM3A 3'UTR 0.13 TCGA-05-4405-01 X 154157322 154157322 C A F8 Missense_Mutation p.L1581F 0.39 tolerated(0.12) possibly_damaging(0.774) TCGA-05-4405-01 X 154493532 154493532 G T RAB39B Silent p.I14I 0.06 TCGA-05-4405-01 X 154493561 154493561 A T RAB39B Missense_Mutation p.W5R 0.05 deleterious(0) probably_damaging(0.999) TCGA-05-4405-01 X 21887655 21887655 G A MBTPS2 Missense_Mutation p.D277N 0.05 deleterious(0.02) probably_damaging(0.951) TCGA-05-4405-01 X 3235264 3235264 G T MXRA5 Missense_Mutation p.P2153Q 0.11 deleterious(0) probably_damaging(0.99) TCGA-05-4405-01 X 32834589 32834589 G T DMD Missense_Mutation p.H176N 0.15 possibly_damaging(0.812) TCGA-05-4405-01 X 34149137 34149137 T A FAM47A Missense_Mutation p.Q420L 0.06 tolerated(0.19) benign(0.027) TCGA-05-4405-01 X 36163029 36163030 - T CHDC2 3'UTR 0.21 TCGA-05-4405-01 X 37028233 37028233 C A FAM47C Missense_Mutation p.P584T 0.13 tolerated(0.09) possibly_damaging(0.803) TCGA-05-4405-01 X 37028467 37028467 C A FAM47C Silent p.R662R 0.19 TCGA-05-4405-01 X 47107228 47107228 G A USP11 Missense_Mutation p.D931N 0.13 tolerated(0.07) probably_damaging(0.995) TCGA-05-4405-01 X 48682427 48682427 T A HDAC6 Nonsense_Mutation p.C1133* 0.14 TCGA-05-4405-01 X 48759733 48759733 G C PQBP1 Missense_Mutation p.E172D 0.32 tolerated(0.18) benign(0.001) TCGA-05-4405-01 X 50053795 50053795 C G CCNB3 Missense_Mutation p.R876G 0.12 tolerated(0.2) benign(0) TCGA-05-4405-01 X 53115108 53115108 G A TSPYL2 Missense_Mutation p.D512N 0.16 tolerated_low_confidence(0.18) benign(0.001) TCGA-05-4405-01 X 54012298 54012298 G T PHF8 Missense_Mutation p.L730M 0.13 deleterious(0.01) probably_damaging(0.93) TCGA-05-4405-01 X 67417059 67417059 A C OPHN1 Missense_Mutation p.L358R 0.15 deleterious(0.01) probably_damaging(0.932) TCGA-05-4405-01 X 73962484 73962484 G T KIAA2022 Missense_Mutation p.H636Q 0.12 deleterious(0.03) probably_damaging(0.988) TCGA-05-4405-01 X 77912693 77912693 C A ZCCHC5 Nonsense_Mutation p.G409* 0.12 TCGA-05-4405-01 X 77913149 77913149 G T ZCCHC5 Missense_Mutation p.Q257K 0.35 deleterious(0) possibly_damaging(0.532) TCGA-05-4405-01 X 78426624 78426624 C A GPR174 Silent p.A40A 0.21 TCGA-05-4405-01 X 78426925 78426925 G T GPR174 Missense_Mutation p.G141C 0.08 deleterious(0.01) probably_damaging(1) TCGA-05-4405-01 X 86888896 86888896 T A KLHL4 Missense_Mutation p.V566D 0.37 deleterious(0) benign(0.197) TCGA-05-4405-01 X 91873455 91873455 C A PCDH11X Missense_Mutation p.P1187Q 0.33 deleterious_low_confidence(0) possibly_damaging(0.849) TCGA-05-4410-01 10 101090517 101090517 G T CNNM1 Missense_Mutation p.R458L 0.24 deleterious(0) possibly_damaging(0.809) TCGA-05-4410-01 10 104170620 104170620 G T PSD Missense_Mutation p.L696I 0.15 deleterious(0) probably_damaging(0.998) TCGA-05-4410-01 10 105209507 105209507 G A CALHM2 Silent p.P64P 0.22 TCGA-05-4410-01 10 106960943 106960943 C T SORCS3 Silent p.A731A 0.22 TCGA-05-4410-01 10 106974285 106974285 C T SORCS3 Missense_Mutation p.P821S 0.21 deleterious(0.01) possibly_damaging(0.725) TCGA-05-4410-01 10 108337101 108337101 C A SORCS1 Intron 0.10 TCGA-05-4410-01 10 108447971 108447971 C T SORCS1 Silent p.G513G 0.18 TCGA-05-4410-01 10 11371046 11371046 T G CELF2 3'UTR 0.18 TCGA-05-4410-01 10 118969189 118969189 C T KCNK18 Silent p.S178S 0.20 TCGA-05-4410-01 10 121086101 121086101 T A GRK5 Nonsense_Mutation p.C42* 0.17 TCGA-05-4410-01 10 121671606 121671606 G T SEC23IP Silent p.T414T 0.22 TCGA-05-4410-01 10 1229175 1229175 C T ADARB2 Silent p.V726V 0.21 TCGA-05-4410-01 10 124697465 124697465 T A C10orf88 Missense_Mutation p.N287Y 0.31 deleterious(0) possibly_damaging(0.657) TCGA-05-4410-01 10 127782644 127782644 T C ADAM12 Missense_Mutation p.N355S 0.23 deleterious(0.03) probably_damaging(1) TCGA-05-4410-01 10 134463936 134463936 G T INPP5A Missense_Mutation p.S78I 0.21 deleterious(0) probably_damaging(0.928) TCGA-05-4410-01 10 134595383 134595383 C T INPP5A Nonsense_Mutation p.R393* 0.13 TCGA-05-4410-01 10 14816390 14816390 C A FAM107B Silent p.R91R 0.15 TCGA-05-4410-01 10 14974866 14974866 C A DCLRE1C Missense_Mutation p.C256F 0.28 deleterious(0) probably_damaging(0.998) TCGA-05-4410-01 10 16990513 16990513 C T CUBN Missense_Mutation p.G1725R 0.14 tolerated(0.67) benign(0.004) TCGA-05-4410-01 10 17369028 17369028 G T ST8SIA6 Missense_Mutation p.S207Y 0.23 deleterious(0) possibly_damaging(0.836) TCGA-05-4410-01 10 17908596 17908596 G T MRC1L1 Missense_Mutation p.M603I 0.25 possibly_damaging(0.828) TCGA-05-4410-01 10 18242230 18242230 G T SLC39A12 Missense_Mutation p.V9L 0.29 tolerated_low_confidence(0.23) benign(0.003) TCGA-05-4410-01 10 18439905 18439905 G T CACNB2 Splice_Site p.X71_splice 0.21 TCGA-05-4410-01 10 22680766 22680766 C A SPAG6 Silent p.R372R 0.24 TCGA-05-4410-01 10 24910126 24910126 C A ARHGAP21 Missense_Mutation p.S233I 0.06 tolerated(0.09) possibly_damaging(0.564) TCGA-05-4410-01 10 25887045 25887045 G T GPR158 Missense_Mutation p.E830D 0.21 tolerated(0.48) benign(0.003) TCGA-05-4410-01 10 26457663 26457663 T A MYO3A Missense_Mutation p.V1045E 0.07 deleterious(0) possibly_damaging(0.67) TCGA-05-4410-01 10 26518625 26518625 C A GAD2 Silent p.I253I 0.16 TCGA-05-4410-01 10 29784046 29784046 G A SVIL Silent p.T1243T 0.19 TCGA-05-4410-01 10 29812503 29812503 C T SVIL Missense_Mutation p.E1014K 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.493) TCGA-05-4410-01 10 30984967 30984967 G T SVILP1 RNA 0.31 TCGA-05-4410-01 10 31750000 31750000 A G ZEB1 Silent p.S31S 0.33 TCGA-05-4410-01 10 37486372 37486372 G A ANKRD30A Missense_Mutation p.A838T 0.15 tolerated(0.19) probably_damaging(0.956) TCGA-05-4410-01 10 37508538 37508538 C A ANKRD30A Missense_Mutation p.H1244N 0.24 deleterious(0.05) benign(0.043) TCGA-05-4410-01 10 38353108 38353108 A T ZNF33A 3'Flank 0.29 TCGA-05-4410-01 10 38647334 38647334 G T HSD17B7P2 RNA 0.12 TCGA-05-4410-01 10 43287086 43287086 G T BMS1 Silent p.L216L 0.17 TCGA-05-4410-01 10 43650913 43650913 G T CSGALNACT2 Missense_Mutation p.G106C 0.11 deleterious(0.04) possibly_damaging(0.834) TCGA-05-4410-01 10 44871442 44871442 A G CXCL12 3'Flank 0.05 TCGA-05-4410-01 10 50531576 50531576 C A C10orf71 Missense_Mutation p.A329D 0.22 tolerated(0.07) possibly_damaging(0.894) TCGA-05-4410-01 10 56138610 56138610 A T PCDH15 Missense_Mutation p.W84R 0.22 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-05-4410-01 10 60577388 60577388 G A BICC1 Missense_Mutation p.C867Y 0.25 deleterious(0.03) probably_damaging(0.998) TCGA-05-4410-01 10 6498661 6498661 C A PRKCQ Missense_Mutation p.G541V 0.19 deleterious(0) probably_damaging(1) TCGA-05-4410-01 10 69881444 69881444 C G MYPN Missense_Mutation p.I83M 0.20 deleterious(0.02) probably_damaging(0.949) TCGA-05-4410-01 10 70332962 70332962 C A TET1 Silent p.P289P 0.15 TCGA-05-4410-01 10 71025520 71025520 A T HKDC1 Missense_Mutation p.E851V 0.18 deleterious(0.03) benign(0.224) TCGA-05-4410-01 10 8100776 8100776 G A GATA3 Silent p.K250K 0.30 TCGA-05-4410-01 10 81371568 81371568 C G SFTPA1 Missense_Mutation p.T11S 0.19 tolerated_low_confidence(0.41) benign(0) TCGA-05-4410-01 10 84118550 84118550 G T NRG3 Missense_Mutation p.K293N 0.21 deleterious(0) probably_damaging(0.996) TCGA-05-4410-01 10 84498377 84498377 C A NRG3 Missense_Mutation p.P333Q 0.23 deleterious(0.02) probably_damaging(0.979) TCGA-05-4410-01 10 90537778 90537778 A T LIPN Missense_Mutation p.I326L 0.13 tolerated(1) benign(0.001) TCGA-05-4410-01 10 90672775 90672775 G T STAMBPL1 Intron 0.12 TCGA-05-4410-01 10 93011157 93011157 G A PCGF5 Missense_Mutation p.C145Y 0.16 deleterious(0) possibly_damaging(0.755) TCGA-05-4410-01 11 103039571 103039571 A T DYNC2H1 Missense_Mutation p.Q1617L 0.09 benign(0.062) TCGA-05-4410-01 11 103182692 103182692 G C DYNC2H1 Missense_Mutation p.R3867P 0.15 benign(0.432) TCGA-05-4410-01 11 103182715 103182715 G T DYNC2H1 Missense_Mutation p.A3875S 0.18 possibly_damaging(0.679) TCGA-05-4410-01 11 103270477 103270477 T G DYNC2H1 Missense_Mutation p.F4088L 0.26 benign(0.039) TCGA-05-4410-01 11 103780531 103780531 G T PDGFD Missense_Mutation p.P335H 0.23 tolerated(0.07) probably_damaging(0.972) TCGA-05-4410-01 11 107224348 107224348 C A CWF19L2 Missense_Mutation p.A663S 0.35 tolerated(0.53) benign(0.06) TCGA-05-4410-01 11 107299594 107299594 T A CWF19L2 Missense_Mutation p.Q455L 0.09 tolerated(0.23) benign(0.066) TCGA-05-4410-01 11 1088725 1088725 C G MUC2 Missense_Mutation p.D1170E 0.25 benign(0.057) TCGA-05-4410-01 11 112084521 112084521 G T BCO2 Missense_Mutation p.E423D 0.28 tolerated(0.27) benign(0.155) TCGA-05-4410-01 11 113195353 113195353 G T TTC12 Missense_Mutation p.D91Y 0.12 deleterious(0) probably_damaging(0.996) TCGA-05-4410-01 11 113608401 113608401 C A ZW10 Nonsense_Mutation p.G637* 0.18 TCGA-05-4410-01 11 113803681 113803681 C T HTR3B Silent p.L188L 0.21 TCGA-05-4410-01 11 116701533 116701533 G T APOC3 Missense_Mutation p.G34C 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-05-4410-01 11 117058097 117058097 A T SIDT2 Missense_Mutation p.H340L 0.05 tolerated(0.52) benign(0.016) TCGA-05-4410-01 11 119998125 119998125 A C TRIM29 Missense_Mutation p.D351E 0.07 tolerated(1) benign(0.008) TCGA-05-4410-01 11 121495847 121495847 G T SORL1 Silent p.G2075G 0.24 TCGA-05-4410-01 11 123900553 123900553 C T OR10G8 Missense_Mutation p.T75M 0.18 deleterious(0) probably_damaging(0.993) TCGA-05-4410-01 11 123901089 123901089 G C OR10G8 Missense_Mutation p.G254R 0.22 deleterious(0.01) possibly_damaging(0.739) TCGA-05-4410-01 11 124266395 124266395 T A OR8B3 Missense_Mutation p.N285Y 0.20 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-05-4410-01 11 124310761 124310761 G T OR8B8 Missense_Mutation p.S74Y 0.28 deleterious_low_confidence(0) possibly_damaging(0.796) TCGA-05-4410-01 11 124742353 124742353 C A ROBO3 Missense_Mutation p.T412N 0.13 deleterious(0.04) possibly_damaging(0.688) TCGA-05-4410-01 11 124857934 124857934 G T CCDC15 Missense_Mutation p.Q604H 0.15 tolerated(0.09) benign(0.435) TCGA-05-4410-01 11 125864222 125864222 T A CDON Silent p.T869T 0.12 TCGA-05-4410-01 11 126081500 126081500 A T RPUSD4 Missense_Mutation p.W12R 0.32 tolerated_low_confidence(0.9) benign(0.004) TCGA-05-4410-01 11 126110847 126110847 G A FAM118B Missense_Mutation p.E83K 0.10 tolerated(0.09) probably_damaging(0.993) TCGA-05-4410-01 11 126139201 126139201 G A FOXRED1 Intron 0.17 TCGA-05-4410-01 11 132016316 132016316 A G NTM Missense_Mutation p.Q103R 0.10 deleterious(0.05) benign(0.008) TCGA-05-4410-01 11 134073739 134073739 C T NCAPD3 Silent p.E426E 0.21 TCGA-05-4410-01 11 1904748 1904748 G C LSP1 Missense_Mutation p.Q280H 0.18 deleterious_low_confidence(0.02) probably_damaging(0.948) TCGA-05-4410-01 11 20636271 20636271 G T SLC6A5 Silent p.S344S 0.28 TCGA-05-4410-01 11 21250989 21250989 C A NELL1 Missense_Mutation p.T513N 0.48 deleterious(0.03) probably_damaging(0.999) TCGA-05-4410-01 11 21581833 21581833 T C NELL1 Missense_Mutation p.S629P 0.30 tolerated(0.07) possibly_damaging(0.616) TCGA-05-4410-01 11 2432703 2432703 G A TRPM5 Silent p.Y887Y 0.32 TCGA-05-4410-01 11 30516971 30516971 G A MPPED2 Silent p.Y136Y 0.08 TCGA-05-4410-01 11 33065296 33065296 G T TCP11L1 Intron 0.21 TCGA-05-4410-01 11 36596039 36596039 C A RAG1 Silent p.P395P 0.33 TCGA-05-4410-01 11 40137206 40137206 G T LRRC4C Missense_Mutation p.P213T 0.33 deleterious(0) probably_damaging(1) TCGA-05-4410-01 11 46105753 46105753 T A PHF21A Silent p.L6L 0.27 TCGA-05-4410-01 11 47360129 47360129 C A MYBPC3 Silent p.T750T 0.35 TCGA-05-4410-01 11 4869754 4869754 C T OR51S1 Missense_Mutation p.G229S 0.24 deleterious(0) possibly_damaging(0.825) TCGA-05-4410-01 11 49186290 49186290 C G FOLH1 Silent p.L469L 0.50 TCGA-05-4410-01 11 49229960 49229960 A T FOLH1 Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-05-4410-01 11 55063006 55063006 C A TRIM51HP RNA 0.19 TCGA-05-4410-01 11 55579417 55579417 C A OR5L1 Missense_Mutation p.H159N 0.23 deleterious(0.04) probably_damaging(1) TCGA-05-4410-01 11 55579652 55579652 C A OR5L1 Missense_Mutation p.A237D 0.21 deleterious(0) probably_damaging(0.969) TCGA-05-4410-01 11 55761205 55761205 C A OR5F1 Missense_Mutation p.K299N 0.25 tolerated(0.68) benign(0.104) TCGA-05-4410-01 11 55761253 55761253 G C OR5F1 Silent p.P283P 0.26 TCGA-05-4410-01 11 55798679 55798679 C A OR5AS1 Missense_Mutation p.P262H 0.20 deleterious(0) probably_damaging(1) TCGA-05-4410-01 11 55873273 55873273 A G OR8H2 Missense_Mutation p.Y252C 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-05-4410-01 11 55873419 55873419 G T OR8H2 Missense_Mutation p.V301F 0.06 tolerated(0.42) benign(0.001) TCGA-05-4410-01 11 55890240 55890240 A T OR8H3 Missense_Mutation p.H131L 0.24 tolerated(1) benign(0.003) TCGA-05-4410-01 11 55904371 55904371 G T OR8J3 Missense_Mutation p.S275Y 0.15 deleterious(0) probably_damaging(1) TCGA-05-4410-01 11 55905109 55905109 A T OR8J3 Missense_Mutation p.L29Q 0.08 tolerated(0.29) possibly_damaging(0.541) TCGA-05-4410-01 11 56043987 56043987 C A OR5T1 Silent p.T291T 0.20 TCGA-05-4410-01 11 56127765 56127765 A T OR8J1 Missense_Mutation p.T15S 0.08 deleterious(0.04) benign(0.018) TCGA-05-4410-01 11 56127775 56127775 C T OR8J1 Missense_Mutation p.S18F 0.19 deleterious(0) probably_damaging(0.933) TCGA-05-4410-01 11 56143193 56143193 T C OR8U1 Silent p.L32L 0.07 TCGA-05-4410-01 11 56380835 56380835 C A OR5M1 Silent p.L48L 0.14 TCGA-05-4410-01 11 57004333 57004333 A T APLNR Missense_Mutation p.V49E 0.24 deleterious(0) probably_damaging(1) TCGA-05-4410-01 11 57886367 57886367 G T OR9I1 Missense_Mutation p.L184M 0.18 deleterious(0.02) probably_damaging(1) TCGA-05-4410-01 11 57958771 57958771 G T OR9Q2 Missense_Mutation p.G270V 0.21 tolerated(0.07) benign(0.219) TCGA-05-4410-01 11 58126446 58126446 A T OR5B17 Missense_Mutation p.Y33N 0.22 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-05-4410-01 11 5842333 5842333 T A OR52N2 Silent p.A256A 0.08 TCGA-05-4410-01 11 59245584 59245584 C G OR4D10 Missense_Mutation p.Q228E 0.10 deleterious(0) benign(0.232) TCGA-05-4410-01 11 60164178 60164178 A T MS4A14 Nonsense_Mutation p.R43* 0.19 TCGA-05-4410-01 11 62159785 62159785 A G ASRGL1 3'UTR 0.27 TCGA-05-4410-01 11 6232933 6232933 G A FAM160A2 Missense_Mutation p.R922W 0.15 deleterious(0) possibly_damaging(0.595) TCGA-05-4410-01 11 62380969 62380969 G A ROM1 Silent p.V72V 0.13 TCGA-05-4410-01 11 62655812 62655812 G A SLC3A2 Missense_Mutation p.E515K 0.14 tolerated(0.51) benign(0.01) TCGA-05-4410-01 11 65811101 65811101 G T GAL3ST3 Missense_Mutation p.P58Q 0.30 deleterious(0.03) possibly_damaging(0.583) TCGA-05-4410-01 11 66084211 66084211 C A CD248 Silent p.L96L 0.21 TCGA-05-4410-01 11 66101539 66101539 C A RIN1 Missense_Mutation p.G481V 0.43 deleterious(0) possibly_damaging(0.747) TCGA-05-4410-01 11 66335115 66335115 G C CTSF Missense_Mutation p.L111V 0.11 tolerated(0.14) benign(0.345) TCGA-05-4410-01 11 67077689 67077689 C T SSH3 Missense_Mutation p.A521V 0.19 tolerated(0.11) benign(0.014) TCGA-05-4410-01 11 72290403 72290403 T A PDE2A Missense_Mutation p.M761L 0.26 tolerated(0.52) benign(0.031) TCGA-05-4410-01 11 73584501 73584501 G A COA4 Intron 0.38 TCGA-05-4410-01 11 7441797 7441797 C A SYT9 Silent p.G466G 0.43 TCGA-05-4410-01 11 82643033 82643033 A G C11orf82 Missense_Mutation p.Y218C 0.20 tolerated(0.2) benign(0.001) TCGA-05-4410-01 11 83641482 83641482 T A DLG2 Missense_Mutation p.K462M 0.15 tolerated(0.08) probably_damaging(0.997) TCGA-05-4410-01 11 84245776 84245776 T C DLG2 Splice_Site p.X120_splice 0.07 TCGA-05-4410-01 11 85979601 85979601 A G EED Missense_Mutation p.K322E 0.18 deleterious(0) probably_damaging(0.995) TCGA-05-4410-01 11 86519409 86519409 G T PRSS23 Missense_Mutation p.G242C 0.19 deleterious(0) probably_damaging(0.997) TCGA-05-4410-01 11 89018021 89018021 G T TYR Missense_Mutation p.R422L 0.22 tolerated(0.16) possibly_damaging(0.762) TCGA-05-4410-01 11 89774530 89774530 C G TRIM49C Missense_Mutation p.L391V 0.07 deleterious(0.03) possibly_damaging(0.883) TCGA-05-4410-01 11 90602343 90602343 C A MIR1261 RNA 0.17 TCGA-05-4410-01 11 92534273 92534273 C A FAT3 Silent p.V2698V 0.22 TCGA-05-4410-01 11 94134282 94134282 C A GPR83 Missense_Mutation p.W44C 0.13 deleterious(0) possibly_damaging(0.572) TCGA-05-4410-01 11 94731487 94731487 G T KDM4D Silent p.V317V 0.16 TCGA-05-4410-01 11 94759373 94759373 C G KDM4E Missense_Mutation p.Q218E 0.23 deleterious(0.01) benign(0.047) TCGA-05-4410-01 12 101505439 101505439 T A ANO4 Missense_Mutation p.Y766N 0.15 deleterious(0) probably_damaging(1) TCGA-05-4410-01 12 103249050 103249050 C G PAH Silent p.V190V 0.33 TCGA-05-4410-01 12 103695875 103695875 C A C12orf42 3'UTR 0.12 TCGA-05-4410-01 12 108686144 108686144 C A CMKLR1 Missense_Mutation p.G199V 0.34 tolerated(0.55) benign(0.005) TCGA-05-4410-01 12 109316512 109316512 C G SVOP Missense_Mutation p.E305D 0.50 tolerated(0.38) benign(0.03) TCGA-05-4410-01 12 111330915 111330915 G C CCDC63 Missense_Mutation p.L370F 0.38 tolerated(0.65) benign(0.002) TCGA-05-4410-01 12 114374902 114374902 C T RBM19 Missense_Mutation p.G660S 0.15 tolerated(0.08) benign(0.011) TCGA-05-4410-01 12 114823367 114823367 C A TBX5 Silent p.T223T 0.14 TCGA-05-4410-01 12 116972455 116972455 G A LINC00173 RNA 0.09 TCGA-05-4410-01 12 117681140 117681140 C T NOS1 Missense_Mutation p.R1009H 0.12 deleterious(0.01) benign(0.018) TCGA-05-4410-01 12 118671561 118671561 T C TAOK3 Silent p.P187P 0.38 TCGA-05-4410-01 12 121773445 121773445 G A ANAPC5 Silent p.L281L 0.09 TCGA-05-4410-01 12 123679134 123679134 T A MPHOSPH9 Missense_Mutation p.E528D 0.35 tolerated(0.06) benign(0.255) TCGA-05-4410-01 12 129294610 129294610 C G SLC15A4 Missense_Mutation p.D297H 0.08 deleterious(0.01) possibly_damaging(0.904) TCGA-05-4410-01 12 131605422 131605422 C T GPR133 Silent p.I713I 0.11 TCGA-05-4410-01 12 133768558 133768558 G T ZNF268 Silent p.V142V 0.32 TCGA-05-4410-01 12 21971084 21971084 C A ABCC9 Silent p.T1257T 0.29 TCGA-05-4410-01 12 22012543 22012543 G A ABCC9 Nonsense_Mutation p.Q828* 0.08 TCGA-05-4410-01 12 27129254 27129254 C G TM7SF3 Missense_Mutation p.W409S 0.16 tolerated(0.09) probably_damaging(1) TCGA-05-4410-01 12 29604465 29604465 G A OVCH1 Silent p.G856G 0.31 TCGA-05-4410-01 12 2997093 2997093 A T RHNO1 Missense_Mutation p.D62V 0.30 deleterious(0) possibly_damaging(0.733) TCGA-05-4410-01 12 32491768 32491768 G T BICD1 Silent p.G873G 0.37 TCGA-05-4410-01 12 40153759 40153759 T A SLC2A13 3'UTR 0.44 TCGA-05-4410-01 12 4919230 4919230 C T KCNA6 Missense_Mutation p.T8M 0.17 tolerated_low_confidence(0.06) benign(0.013) TCGA-05-4410-01 12 50152023 50152023 C T TMBIM6 Silent p.G158G 0.36 TCGA-05-4410-01 12 51100372 51100372 G T DIP2B Missense_Mutation p.G820C 0.36 deleterious(0) probably_damaging(0.996) TCGA-05-4410-01 12 51717914 51717914 C A BIN2 5'UTR 0.38 TCGA-05-4410-01 12 52369262 52369262 A G ACVR1B Missense_Mutation p.N102S 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-05-4410-01 12 52799789 52799789 G A KRT82 Silent p.C91C 0.38 TCGA-05-4410-01 12 52964617 52964617 C G KRT74 Missense_Mutation p.E282Q 0.32 deleterious(0) probably_damaging(0.995) TCGA-05-4410-01 12 53001921 53001921 A G KRT73 3'UTR 0.43 TCGA-05-4410-01 12 54333267 54333267 G T HOXC13 Missense_Mutation p.V193L 0.37 deleterious(0) benign(0.134) TCGA-05-4410-01 12 5603685 5603685 C A NTF3 Missense_Mutation p.P115Q 0.38 deleterious(0) possibly_damaging(0.857) TCGA-05-4410-01 12 56823998 56823998 C T TIMELESS Missense_Mutation p.R326Q 0.13 tolerated(0.79) benign(0.001) TCGA-05-4410-01 12 57970090 57970090 C A KIF5A Silent p.A709A 0.35 TCGA-05-4410-01 12 60168526 60168526 C T SLC16A7 Silent p.A150A 0.35 TCGA-05-4410-01 12 6669388 6669388 T A NOP2 Silent p.R588R 0.14 TCGA-05-4410-01 12 69968531 69968531 G T FRS2 Missense_Mutation p.L441F 0.35 deleterious(0.01) possibly_damaging(0.564) TCGA-05-4410-01 12 70004436 70004436 G T LRRC10 Missense_Mutation p.D61E 0.37 tolerated(0.05) probably_damaging(0.943) TCGA-05-4410-01 12 71094917 71094917 C T PTPRR Missense_Mutation p.M398I 0.27 tolerated(0.37) benign(0.102) TCGA-05-4410-01 12 80722873 80722873 C A OTOGL Missense_Mutation p.A1432D 0.47 tolerated(0.29) benign(0.001) TCGA-05-4410-01 12 82824732 82824732 G T METTL25 Missense_Mutation p.C447F 0.05 tolerated(0.8) benign(0.025) TCGA-05-4410-01 12 85626515 85626515 G A LRRIQ1 Missense_Mutation p.G1666D 0.14 deleterious(0.01) probably_damaging(1) TCGA-05-4410-01 12 93804897 93804897 C A UBE2N Missense_Mutation p.R70L 0.40 tolerated(0.11) benign(0.344) TCGA-05-4410-01 12 95660204 95660204 G T VEZT Missense_Mutation p.W169L 0.42 tolerated(0.16) probably_damaging(1) TCGA-05-4410-01 12 95660205 95660205 G T VEZT Missense_Mutation p.W169C 0.42 deleterious(0.05) probably_damaging(1) TCGA-05-4410-01 13 101714351 101714351 C A NALCN Missense_Mutation p.W1575L 0.29 deleterious(0) probably_damaging(1) TCGA-05-4410-01 13 102375181 102375181 C A FGF14 Nonstop_Mutation p.*253Yext*17 0.23 TCGA-05-4410-01 13 111371668 111371668 G T ING1 Missense_Mutation p.A220S 0.25 tolerated(0.05) possibly_damaging(0.555) TCGA-05-4410-01 13 113729424 113729424 G T MCF2L Missense_Mutation p.C410F 0.14 deleterious(0) probably_damaging(0.935) TCGA-05-4410-01 13 113897369 113897369 G A CUL4A Missense_Mutation p.V375M 0.21 deleterious(0.04) possibly_damaging(0.538) TCGA-05-4410-01 13 19752452 19752452 G T TUBA3C Nonsense_Mutation p.Y103* 0.10 TCGA-05-4410-01 13 21742417 21742417 C A SKA3 Missense_Mutation p.K151N 0.12 tolerated(0.15) benign(0.022) TCGA-05-4410-01 13 23906719 23906719 C A SACS Missense_Mutation p.V3766L 0.17 probably_damaging(0.978) TCGA-05-4410-01 13 25671349 25671349 T A PABPC3 Missense_Mutation p.V338E 0.22 deleterious(0) probably_damaging(0.993) TCGA-05-4410-01 13 36049377 36049377 A G MAB21L1 Missense_Mutation p.L300P 0.15 deleterious(0) probably_damaging(0.953) TCGA-05-4410-01 13 37012875 37012875 G T CCNA1 Missense_Mutation p.G255V 0.12 tolerated(0.1) probably_damaging(0.958) TCGA-05-4410-01 13 38154834 38154834 C A POSTN Missense_Mutation p.A465S 0.22 tolerated(0.23) benign(0.047) TCGA-05-4410-01 13 40174972 40174972 C A LHFP Missense_Mutation p.G128W 0.21 deleterious(0) probably_damaging(0.922) TCGA-05-4410-01 13 41705439 41705439 T C KBTBD6 Silent p.T403T 0.04 TCGA-05-4410-01 13 49777385 49777385 C T FNDC3A Nonsense_Mutation p.Q1083* 0.08 TCGA-05-4410-01 13 49951249 49951249 T C CAB39L Missense_Mutation p.K44E 0.17 deleterious(0) possibly_damaging(0.878) TCGA-05-4410-01 13 52520526 52520526 C A ATP7B Missense_Mutation p.C985F 0.17 deleterious(0) probably_damaging(0.998) TCGA-05-4410-01 13 52693477 52693477 T A NEK5 Silent p.V64V 0.12 TCGA-05-4410-01 13 53608516 53608516 C T OLFM4 Missense_Mutation p.R80C 0.08 deleterious(0.04) possibly_damaging(0.676) TCGA-05-4410-01 13 58208014 58208014 G - PCDH17 Frame_Shift_Del p.D446Tfs*18 0.28 TCGA-05-4410-01 13 58240910 58240910 G A PCDH17 Missense_Mutation p.V914I 0.17 tolerated(0.13) benign(0.15) TCGA-05-4410-01 13 72133996 72133996 A T DACH1 Missense_Mutation p.V466E 0.13 benign(0.395) TCGA-05-4410-01 13 72255995 72255995 G - DACH1 Frame_Shift_Del p.P301Qfs*19 0.14 TCGA-05-4410-01 13 79929484 79929484 G A RBM26 Silent p.I575I 0.07 TCGA-05-4410-01 13 80911103 80911103 C A SPRY2 Missense_Mutation p.Q246H 0.22 tolerated(0.07) possibly_damaging(0.776) TCGA-05-4410-01 13 80911650 80911650 C A SPRY2 Missense_Mutation p.R64I 0.14 deleterious(0.05) probably_damaging(0.991) TCGA-05-4410-01 13 84454950 84454950 G C SLITRK1 Silent p.P231P 0.16 TCGA-05-4410-01 13 84454951 84454951 G T SLITRK1 Missense_Mutation p.P231H 0.17 deleterious(0) probably_damaging(0.984) TCGA-05-4410-01 13 86368425 86368425 G T SLITRK6 Missense_Mutation p.T740K 0.16 tolerated(0.24) benign(0.003) TCGA-05-4410-01 13 88329046 88329046 G T SLITRK5 Missense_Mutation p.R468M 0.17 tolerated(0.22) benign(0.032) TCGA-05-4410-01 13 94958244 94958244 G A GPC6 Missense_Mutation p.G340E 0.08 tolerated(0.06) benign(0.208) TCGA-05-4410-01 13 95235491 95235491 C G TGDS Splice_Site p.X105_splice 0.23 TCGA-05-4410-01 13 96230256 96230256 T A CLDN10 Missense_Mutation p.N225K 0.16 deleterious(0.03) possibly_damaging(0.77) TCGA-05-4410-01 13 96264337 96264337 T A DZIP1 Missense_Mutation p.Q423L 0.16 deleterious(0.03) benign(0.055) TCGA-05-4410-01 13 96272140 96272140 C G DZIP1 Missense_Mutation p.R391P 0.11 tolerated(0.1) possibly_damaging(0.693) TCGA-05-4410-01 13 97484870 97484870 A G HS6ST3 Silent p.P278P 0.17 TCGA-05-4410-01 13 99364135 99364135 T A SLC15A1 Silent p.P291P 0.21 TCGA-05-4410-01 14 102964478 102964478 G T TECPR2 Missense_Mutation p.G1374C 0.32 deleterious(0) probably_damaging(1) TCGA-05-4410-01 14 105477708 105477708 G C CDCA4 Missense_Mutation p.P187A 0.08 tolerated(0.3) benign(0.004) TCGA-05-4410-01 14 106667683 106667683 C T IGHV3-20 Silent p.V83V 0.07 TCGA-05-4410-01 14 107012987 107012987 T A IGHV3-49 Missense_Mutation p.Q103L 0.37 deleterious_low_confidence(0) possibly_damaging(0.555) TCGA-05-4410-01 14 107048872 107048872 T A IGHV3-53 Missense_Mutation p.S50C 0.20 deleterious_low_confidence(0) possibly_damaging(0.761) TCGA-05-4410-01 14 20345226 20345226 C G OR4K2 Missense_Mutation p.T267R 0.16 deleterious(0.01) benign(0.251) TCGA-05-4410-01 14 20482658 20482658 C A OR4K14 Missense_Mutation p.G232V 0.46 tolerated(0.18) benign(0.009) TCGA-05-4410-01 14 20528892 20528892 C T OR4L1 Missense_Mutation p.S230L 0.37 deleterious(0.02) benign(0.098) TCGA-05-4410-01 14 20845891 20845891 G A TEP1 Silent p.L1915L 0.44 TCGA-05-4410-01 14 20917122 20917122 C A OSGEP Splice_Site p.X186_splice 0.07 TCGA-05-4410-01 14 23867979 23867979 G A MYH6 Missense_Mutation p.L617F 0.05 tolerated(0.06) possibly_damaging(0.698) TCGA-05-4410-01 14 24601569 24601569 G T FITM1 Missense_Mutation p.G139V 0.38 tolerated(0.19) benign(0.157) TCGA-05-4410-01 14 24976618 24976618 A G CMA1 Silent p.C51C 0.36 TCGA-05-4410-01 14 26917470 26917470 C A NOVA1 Missense_Mutation p.A407S 0.34 tolerated(0.15) benign(0.107) TCGA-05-4410-01 14 47530601 47530601 T A MDGA2 Missense_Mutation p.Q459L 0.12 tolerated(0.26) possibly_damaging(0.466) TCGA-05-4410-01 14 53570567 53570567 A C DDHD1 Missense_Mutation p.D282E 0.14 tolerated(0.62) benign(0.008) TCGA-05-4410-01 14 54416766 54416766 C A BMP4 Missense_Mutation p.G404V 0.36 deleterious(0) probably_damaging(0.993) TCGA-05-4410-01 14 64653253 64653253 C T SYNE2 Nonsense_Mutation p.Q5890* 0.09 TCGA-05-4410-01 14 70713178 70713178 C T ADAM21P1 RNA 0.35 TCGA-05-4410-01 14 74125629 74125629 A - DNAL1 Frame_Shift_Del p.D41Vfs*26 0.27 TCGA-05-4410-01 14 75269332 75269332 C G YLPM1 Missense_Mutation p.Q1492E 0.09 benign(0.354) TCGA-05-4410-01 14 88477441 88477441 C T GPR65 Missense_Mutation p.P84S 0.34 tolerated(0.43) benign(0.044) TCGA-05-4410-01 14 94914523 94914523 G T SERPINA11 Missense_Mutation p.P197T 0.36 deleterious(0.04) benign(0.346) TCGA-05-4410-01 14 95910916 95910916 T A SYNE3 Missense_Mutation p.Q561L 0.12 tolerated(0.13) benign(0.15) TCGA-05-4410-01 14 96807883 96807883 C T ATG2B Silent p.Q300Q 0.36 TCGA-05-4410-01 15 25429526 25429526 C A SNORD115-8 RNA 0.28 TCGA-05-4410-01 15 25451253 25451253 C A SNORD115-22 5'Flank 0.29 TCGA-05-4410-01 15 34536239 34536239 C A SLC12A6 Missense_Mutation p.A660S 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-05-4410-01 15 41797642 41797642 C G LTK Missense_Mutation p.G595A 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-05-4410-01 15 42436333 42436333 G T PLA2G4F Missense_Mutation p.P662Q 0.16 tolerated(0.45) benign(0.018) TCGA-05-4410-01 15 48062872 48062872 C A SEMA6D Silent p.A704A 0.28 TCGA-05-4410-01 15 49284854 49284854 C T SECISBP2L Missense_Mutation p.D965N 0.44 tolerated(0.17) probably_damaging(0.999) TCGA-05-4410-01 15 49935624 49935624 A T DTWD1 Missense_Mutation p.Y255F 0.31 deleterious(0) probably_damaging(1) TCGA-05-4410-01 15 50534698 50534698 C A HDC Missense_Mutation p.R583L 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-05-4410-01 15 59752207 59752207 G T FAM81A Missense_Mutation p.Q32H 0.42 tolerated(0.49) possibly_damaging(0.859) TCGA-05-4410-01 15 62325678 62325678 G A VPS13C Missense_Mutation p.S116F 0.11 deleterious(0.03) possibly_damaging(0.675) TCGA-05-4410-01 15 63363340 63363340 A T TPM1 Missense_Mutation p.D275V 0.26 deleterious(0.02) possibly_damaging(0.693) TCGA-05-4410-01 15 65888105 65888105 G C VWA9 Silent p.S212S 0.25 TCGA-05-4410-01 15 67473677 67473677 C T SMAD3 Missense_Mutation p.P253S 0.10 tolerated(0.11) possibly_damaging(0.558) TCGA-05-4410-01 15 71124586 71124586 G T LARP6 Silent p.P427P 0.22 TCGA-05-4410-01 15 77471194 77471194 T C PEAK1 Silent p.L1025L 0.13 TCGA-05-4410-01 15 85360091 85360091 G T ALPK3 Missense_Mutation p.W5L 0.32 tolerated_low_confidence(0.2) benign(0) TCGA-05-4410-01 15 87089343 87089343 C A AGBL1 Silent p.I886I 0.29 TCGA-05-4410-01 15 90172699 90172699 G T KIF7 Missense_Mutation p.L1142M 0.28 deleterious(0.01) probably_damaging(0.917) TCGA-05-4410-01 15 91172586 91172586 C T CRTC3 Missense_Mutation p.S363L 0.07 deleterious(0.01) benign(0.005) TCGA-05-4410-01 16 12875245 12875245 C A CPPED1 Missense_Mutation p.W29L 0.14 deleterious(0) possibly_damaging(0.885) TCGA-05-4410-01 16 15222081 15222081 T A RP11-1186N24.5 Intron 0.19 TCGA-05-4410-01 16 16162136 16162136 A G ABCC1 Missense_Mutation p.M601V 0.07 deleterious(0.04) benign(0.008) TCGA-05-4410-01 16 19548650 19548650 A T CCP110 Missense_Mutation p.L553F 0.27 deleterious(0.02) benign(0.012) TCGA-05-4410-01 16 20043588 20043588 G T GPR139 Silent p.T177T 0.22 TCGA-05-4410-01 16 20554314 20554314 C A ACSM2B Missense_Mutation p.E477D 0.14 deleterious(0.01) possibly_damaging(0.768) TCGA-05-4410-01 16 21073886 21073886 C T DNAH3 Missense_Mutation p.D1213N 0.13 tolerated(0.08) benign(0.033) TCGA-05-4410-01 16 21328462 21328462 T C CRYM-AS1 RNA 0.13 TCGA-05-4410-01 16 22152985 22152985 G C VWA3A Silent p.L822L 0.22 TCGA-05-4410-01 16 2511049 2511049 C A C16orf59 Silent p.R143R 0.16 TCGA-05-4410-01 16 27374420 27374420 G A IL4R Missense_Mutation p.E583K 0.18 tolerated(1) benign(0) TCGA-05-4410-01 16 27517400 27517401 - T GTF3C1 Frame_Shift_Ins p.Q531Afs*10 0.15 TCGA-05-4410-01 16 28905841 28905841 G T ATP2A1 Missense_Mutation p.K400N 0.21 tolerated(0.12) benign(0.075) TCGA-05-4410-01 16 30392511 30392511 G T SEPT1 Silent p.I170I 0.13 TCGA-05-4410-01 16 30495236 30495236 G A ITGAL Missense_Mutation p.G271S 0.15 tolerated(0.11) benign(0.008) TCGA-05-4410-01 16 30723384 30723384 G T SRCAP Missense_Mutation p.G574V 0.24 unknown(0) TCGA-05-4410-01 16 30748500 30748500 G T SRCAP Missense_Mutation p.R2380L 0.15 probably_damaging(0.931) TCGA-05-4410-01 16 30748501 30748501 G T SRCAP Silent p.R2380R 0.15 TCGA-05-4410-01 16 31046343 31046343 A C STX4 Silent p.T120T 0.07 TCGA-05-4410-01 16 31388578 31388578 G - ITGAX Frame_Shift_Del p.V928Lfs*50 0.16 TCGA-05-4410-01 16 31485036 31485036 G A TGFB1I1 Missense_Mutation p.D55N 0.07 tolerated(0.2) benign(0.01) TCGA-05-4410-01 16 32077466 32077466 C T IGHV3OR16-9 Silent p.F27F 0.11 TCGA-05-4410-01 16 47117419 47117419 C T NETO2 Missense_Mutation p.A431T 0.21 tolerated_low_confidence(0.33) benign(0.003) TCGA-05-4410-01 16 48117856 48117856 G T ABCC12 Silent p.L1319L 0.23 TCGA-05-4410-01 16 48576960 48576960 C A N4BP1 Missense_Mutation p.R849I 0.10 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 16 49407973 49407973 G T C16orf78 Missense_Mutation p.R41S 0.16 deleterious(0) probably_damaging(0.991) TCGA-05-4410-01 16 50338319 50338319 G C ADCY7 Missense_Mutation p.D473H 0.12 deleterious(0.04) possibly_damaging(0.717) TCGA-05-4410-01 16 56936384 56936384 G C SLC12A3 Missense_Mutation p.K949N 0.25 deleterious(0.03) probably_damaging(0.937) TCGA-05-4410-01 16 57486813 57486813 G T COQ9 Missense_Mutation p.G115W 0.22 deleterious(0) probably_damaging(1) TCGA-05-4410-01 16 57712138 57712138 C A GPR97 Silent p.P134P 0.15 TCGA-05-4410-01 16 61858985 61858985 G T CDH8 Missense_Mutation p.L256M 0.16 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 16 64982668 64982668 G T CDH11 Intron 0.31 TCGA-05-4410-01 16 64984694 64984694 G T CDH11 Missense_Mutation p.L624I 0.12 deleterious(0.03) probably_damaging(0.991) TCGA-05-4410-01 16 66975441 66975441 G T CES2 Silent p.G380G 0.11 TCGA-05-4410-01 16 68156594 68156594 C T NFATC3 Missense_Mutation p.P270S 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-05-4410-01 16 68597462 68597462 G T ZFP90 Missense_Mutation p.D258Y 0.16 deleterious(0.04) probably_damaging(0.924) TCGA-05-4410-01 16 68867467 68867467 G T CDH1 3'UTR 0.17 TCGA-05-4410-01 16 71779116 71779116 C T AP1G1 Missense_Mutation p.A647T 0.17 tolerated(0.4) benign(0.003) TCGA-05-4410-01 16 71961559 71961559 G T IST1 Missense_Mutation p.R328I 0.16 tolerated(0.19) benign(0.212) TCGA-05-4410-01 16 76350378 76350378 A T CNTNAP4 Missense_Mutation p.S27C 0.14 deleterious(0.01) probably_damaging(0.987) TCGA-05-4410-01 16 76482812 76482812 A G CNTNAP4 Silent p.A272A 0.12 TCGA-05-4410-01 16 76569506 76569506 G T CNTNAP4 Missense_Mutation p.M867I 0.14 tolerated(0.41) benign(0.001) TCGA-05-4410-01 16 78064691 78064691 T C CLEC3A Missense_Mutation p.C192R 0.12 deleterious(0) probably_damaging(1) TCGA-05-4410-01 16 80583453 80583453 T C DYNLRB2 Missense_Mutation p.M51T 0.08 tolerated(0.64) benign(0.004) TCGA-05-4410-01 16 81097426 81097426 G A C16orf46 Silent p.L45L 0.16 TCGA-05-4410-01 16 84070307 84070307 G T SLC38A8 Missense_Mutation p.L130M 0.14 deleterious(0.01) possibly_damaging(0.665) TCGA-05-4410-01 16 85109450 85109450 G T KIAA0513 Missense_Mutation p.E168D 0.14 deleterious(0.03) possibly_damaging(0.859) TCGA-05-4410-01 16 90160912 90160912 G T TUBB8P7 RNA 0.22 TCGA-05-4410-01 17 10352302 10352302 C A MYH4 Missense_Mutation p.C1415F 0.18 deleterious(0) probably_damaging(0.925) TCGA-05-4410-01 17 10441144 10441144 G T MYH2 Missense_Mutation p.S475R 0.26 deleterious(0.01) possibly_damaging(0.657) TCGA-05-4410-01 17 11556077 11556077 G C DNAH9 Splice_Site p.X785_splice 0.20 TCGA-05-4410-01 17 11726227 11726227 C A DNAH9 Missense_Mutation p.P3041H 0.35 probably_damaging(0.999) TCGA-05-4410-01 17 15516139 15516139 T G RP11-385D13.1 Splice_Site p.X644_splice 0.31 TCGA-05-4410-01 17 15641674 15641674 C A TBC1D26 Silent p.I120I 0.14 TCGA-05-4410-01 17 1578503 1578503 C A PRPF8 Silent p.V1001V 0.27 TCGA-05-4410-01 17 18881367 18881367 C A FAM83G Missense_Mutation p.G538W 0.34 deleterious(0.02) possibly_damaging(0.77) TCGA-05-4410-01 17 21477582 21477582 G A AC138710.1 5'Flank 0.29 TCGA-05-4410-01 17 25746826 25746826 G T TBC1D3P5 RNA 0.17 TCGA-05-4410-01 17 26116678 26116678 G A NOS2 Silent p.L49L 0.25 TCGA-05-4410-01 17 27085451 27085451 C - FAM222B Frame_Shift_Del p.S509Tfs*2 0.10 TCGA-05-4410-01 17 27306826 27306826 A C SEZ6 Missense_Mutation p.C244G 0.20 deleterious(0) possibly_damaging(0.611) TCGA-05-4410-01 17 27957793 27957793 C T SSH2 3'UTR 0.05 TCGA-05-4410-01 17 3195709 3195709 G - OR3A1 Frame_Shift_Del p.K57Nfs*29 0.23 TCGA-05-4410-01 17 32956077 32956077 G A TMEM132E Missense_Mutation p.E308K 0.20 tolerated(0.05) possibly_damaging(0.889) TCGA-05-4410-01 17 34325363 34325363 C T CCL15 Missense_Mutation p.M67I 0.32 tolerated(0.08) benign(0.392) TCGA-05-4410-01 17 38510598 38510598 G A RARA Missense_Mutation p.M284I 0.10 tolerated(0.06) benign(0.434) TCGA-05-4410-01 17 39394620 39394620 A G KRTAP9-8 Missense_Mutation p.Y106C 0.15 tolerated(0.61) probably_damaging(0.999) TCGA-05-4410-01 17 39919432 39919432 C A JUP Missense_Mutation p.G434C 0.34 deleterious(0) probably_damaging(1) TCGA-05-4410-01 17 4008083 4008083 C A ZZEF1 Nonsense_Mutation p.E473* 0.14 TCGA-05-4410-01 17 40695601 40695601 A G NAGLU Missense_Mutation p.N526S 0.21 tolerated(1) benign(0.014) TCGA-05-4410-01 17 41934478 41934478 A T CD300LG Missense_Mutation p.Q280L 0.09 tolerated(1) benign(0.001) TCGA-05-4410-01 17 43333282 43333282 C T SPATA32 Silent p.T89T 0.27 TCGA-05-4410-01 17 45376866 45376866 C A ITGB3 Missense_Mutation p.P628H 0.17 deleterious(0) probably_damaging(0.972) TCGA-05-4410-01 17 45376867 45376867 C A ITGB3 Silent p.P628P 0.16 TCGA-05-4410-01 17 45993740 45993740 G C SP2 Silent p.L101L 0.10 TCGA-05-4410-01 17 46111234 46111234 G T COPZ2 Missense_Mutation p.T86N 0.14 deleterious(0.02) benign(0.053) TCGA-05-4410-01 17 48263689 48263689 C T COL1A1 Missense_Mutation p.D1332N 0.05 unknown(0) TCGA-05-4410-01 17 48474597 48474597 T A LRRC59 Missense_Mutation p.N28Y 0.10 deleterious(0.02) possibly_damaging(0.447) TCGA-05-4410-01 17 4856127 4856127 G T ENO3 Silent p.T41T 0.26 TCGA-05-4410-01 17 48600956 48600956 A T MYCBPAP Splice_Site p.X526_splice 0.33 TCGA-05-4410-01 17 48684342 48684342 G T CACNA1G Missense_Mutation p.D1502Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 17 51901776 51901776 G C KIF2B Missense_Mutation p.S461T 0.17 deleterious(0.04) benign(0.012) TCGA-05-4410-01 17 56247902 56247902 G A OR4D2 Missense_Mutation p.A296T 0.11 tolerated(0.26) benign(0.046) TCGA-05-4410-01 17 56557394 56557394 G A HSF5 Missense_Mutation p.P262L 0.06 tolerated(0.09) probably_damaging(0.987) TCGA-05-4410-01 17 60342173 60342173 G T TBC1D3P2 3'Flank 0.32 TCGA-05-4410-01 17 61623234 61623234 C T KCNH6 Missense_Mutation p.P986S 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-05-4410-01 17 62025346 62025346 G T SCN4A Nonsense_Mutation p.Y1074* 0.47 TCGA-05-4410-01 17 65962715 65962715 G C BPTF Missense_Mutation p.E2828Q 0.07 probably_damaging(0.961) TCGA-05-4410-01 17 66352843 66352851 TCCCTCTTT - ARSG In_Frame_Del p.L201_Y204delinsH 0.31 TCGA-05-4410-01 17 67103890 67103890 G C ABCA6 Nonsense_Mutation p.S779* 0.07 TCGA-05-4410-01 17 68128375 68128375 C A KCNJ16 Missense_Mutation p.H49Q 0.07 tolerated(0.12) probably_damaging(0.935) TCGA-05-4410-01 17 74729846 74729846 C T METTL23 3'UTR 0.13 TCGA-05-4410-01 17 7577096 7577096 T A TP53 Missense_Mutation p.D281V 0.26 deleterious(0) probably_damaging(0.99) TCGA-05-4410-01 17 76116639 76116639 G A TMC6 Intron 0.09 TCGA-05-4410-01 17 7796813 7796813 C T CHD3 Missense_Mutation p.P299L 0.35 possibly_damaging(0.713) TCGA-05-4410-01 17 78319272 78319272 G T RNF213 Silent p.L2379L 0.14 TCGA-05-4410-01 17 79573732 79573732 G C NPLOC4 Missense_Mutation p.I213M 0.14 deleterious(0) possibly_damaging(0.746) TCGA-05-4410-01 17 79662893 79662893 C T HGS Silent p.F419F 0.10 TCGA-05-4410-01 17 8249255 8249255 C T ODF4 3'UTR 0.43 TCGA-05-4410-01 17 9546502 9546502 C A WDR16 Missense_Mutation p.P617Q 0.22 deleterious(0) probably_damaging(1) TCGA-05-4410-01 18 13885213 13885213 G A MC2R Missense_Mutation p.A102V 0.20 tolerated(0.17) possibly_damaging(0.574) TCGA-05-4410-01 18 15323297 15323297 A T RNU6-721P 5'Flank 0.20 TCGA-05-4410-01 18 21735704 21735704 T A CABYR Nonsense_Mutation p.L80* 0.22 TCGA-05-4410-01 18 22806254 22806254 C A ZNF521 Missense_Mutation p.R543L 0.13 tolerated(0.2) possibly_damaging(0.677) TCGA-05-4410-01 18 22807073 22807073 G T ZNF521 Missense_Mutation p.P270H 0.09 tolerated(0.13) probably_damaging(0.999) TCGA-05-4410-01 18 22807426 22807426 A C ZNF521 Missense_Mutation p.S152R 0.21 deleterious(0) probably_damaging(0.993) TCGA-05-4410-01 18 28914145 28914145 G T DSG1 Nonsense_Mutation p.G329* 0.14 TCGA-05-4410-01 18 30992007 30992007 G T CCDC178 Missense_Mutation p.Q16K 0.22 tolerated(0.49) benign(0.002) TCGA-05-4410-01 18 32459649 32459649 A T DTNA Missense_Mutation p.S623C 0.16 deleterious_low_confidence(0.04) benign(0.394) TCGA-05-4410-01 18 32682021 32682021 G T MAPRE2 Missense_Mutation p.V170L 0.16 tolerated(0.7) benign(0.005) TCGA-05-4410-01 18 34539372 34539372 G A KIAA1328 Missense_Mutation p.G184S 0.32 tolerated(0.75) benign(0.061) TCGA-05-4410-01 18 40853935 40853935 C T SYT4 Silent p.K153K 0.11 TCGA-05-4410-01 18 43493755 43493755 G C EPG5 Missense_Mutation p.I1244M 0.12 tolerated(0.11) probably_damaging(0.965) TCGA-05-4410-01 18 44560607 44560607 G C TCEB3B Missense_Mutation p.D343E 0.19 tolerated(0.18) benign(0.009) TCGA-05-4410-01 18 44560667 44560667 C T TCEB3B Silent p.R323R 0.26 TCGA-05-4410-01 18 50994380 50994380 G T DCC Missense_Mutation p.A1246S 0.26 tolerated(0.45) benign(0.009) TCGA-05-4410-01 18 52258503 52258503 G T DYNAP Missense_Mutation p.G23V 0.28 tolerated(0.06) probably_damaging(0.988) TCGA-05-4410-01 18 64178885 64178885 G T CDH19 Missense_Mutation p.S499Y 0.25 deleterious(0.01) probably_damaging(0.921) TCGA-05-4410-01 18 67741202 67741202 C A RTTN Missense_Mutation p.R1531S 0.39 tolerated(0.13) benign(0.021) TCGA-05-4410-01 18 6896572 6896572 C T ARHGAP28 Silent p.L500L 0.13 TCGA-05-4410-01 18 72247446 72247446 C A CNDP1 Missense_Mutation p.H416Q 0.29 tolerated(0.18) benign(0.001) TCGA-05-4410-01 18 77893726 77893726 G A ADNP2 Missense_Mutation p.E144K 0.10 tolerated(0.33) possibly_damaging(0.703) TCGA-05-4410-01 19 10249218 10249218 C G DNMT1 Missense_Mutation p.E1338Q 0.10 tolerated(0.1) benign(0.251) TCGA-05-4410-01 19 12875625 12875625 C T HOOK2 Intron 0.16 TCGA-05-4410-01 19 13004356 13004356 C G GCDH Missense_Mutation p.R132G 0.18 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-05-4410-01 19 14071859 14071859 G A DCAF15 3'UTR 0.17 TCGA-05-4410-01 19 14875407 14875407 G A EMR2 Silent p.L308L 0.36 TCGA-05-4410-01 19 15757873 15757873 C A CYP4F3 Missense_Mutation p.P119T 0.14 deleterious(0.01) possibly_damaging(0.853) TCGA-05-4410-01 19 15784338 15784338 G A CYP4F12 Splice_Site 0.08 TCGA-05-4410-01 19 16222769 16222769 G T RAB8A Missense_Mutation p.G20W 0.29 deleterious(0) probably_damaging(1) TCGA-05-4410-01 19 17571646 17571646 G T NXNL1 Silent p.I11I 0.29 TCGA-05-4410-01 19 18170764 18170764 G A IL12RB1 Silent p.A641A 0.40 TCGA-05-4410-01 19 1881444 1881444 G A ABHD17A Missense_Mutation p.P41L 0.11 tolerated(0.17) benign(0.012) TCGA-05-4410-01 19 22154744 22154744 C A ZNF208 Missense_Mutation p.C1031F 0.32 deleterious(0) probably_damaging(1) TCGA-05-4410-01 19 22155075 22155075 C G ZNF208 Missense_Mutation p.E921Q 0.12 tolerated(0.08) unknown(0) TCGA-05-4410-01 19 22155565 22155565 G T ZNF208 Silent p.A757A 0.36 TCGA-05-4410-01 19 2220147 2220147 C T DOT1L Missense_Mutation p.S911L 0.13 tolerated_low_confidence(0.18) benign(0.236) TCGA-05-4410-01 19 22847748 22847748 G T ZNF492 Missense_Mutation p.C426F 0.17 deleterious(0) probably_damaging(0.985) TCGA-05-4410-01 19 23159339 23159339 C A ZNF728 Missense_Mutation p.R267L 0.30 tolerated(0.54) benign(0.009) TCGA-05-4410-01 19 2444466 2444466 C G LMNB2 Missense_Mutation p.E113Q 0.11 deleterious(0.02) possibly_damaging(0.874) TCGA-05-4410-01 19 288086 288086 G A PPAP2C Silent p.P67P 0.07 TCGA-05-4410-01 19 30303884 30303884 G A CCNE1 Silent p.Q40Q 0.40 TCGA-05-4410-01 19 3381731 3381731 G C NFIC Missense_Mutation p.E18Q 0.32 deleterious(0) probably_damaging(1) TCGA-05-4410-01 19 3381733 3381733 G T NFIC Missense_Mutation p.E18D 0.32 deleterious(0) probably_damaging(0.997) TCGA-05-4410-01 19 34302440 34302440 C G KCTD15 Missense_Mutation p.R226G 0.46 tolerated(0.07) benign(0.006) TCGA-05-4410-01 19 37005747 37005747 C T ZNF260 Missense_Mutation p.G132R 0.45 deleterious(0) possibly_damaging(0.892) TCGA-05-4410-01 19 3785124 3785124 G T MATK Intron 0.20 TCGA-05-4410-01 19 39103297 39103297 C A MAP4K1 Nonsense_Mutation p.E207* 0.59 TCGA-05-4410-01 19 39214592 39214592 C T ACTN4 Silent p.L523L 0.45 TCGA-05-4410-01 19 40480540 40480540 G C PSMC4 Missense_Mutation p.Q193H 0.55 deleterious(0) probably_damaging(0.91) TCGA-05-4410-01 19 40554637 40554637 C A ZNF780B Missense_Mutation p.D26Y 0.47 tolerated(0.2) benign(0.108) TCGA-05-4410-01 19 43268342 43268342 A C PSG8 Silent p.L52L 0.06 TCGA-05-4410-01 19 43699272 43699272 C - PSG4 Frame_Shift_Del p.R288Hfs*39 0.40 TCGA-05-4410-01 19 45496195 45496195 C G CLPTM1 3'UTR 0.61 TCGA-05-4410-01 19 46287940 46287940 C T AC011530.4 Missense_Mutation p.E52K 0.22 tolerated_low_confidence(0.74) possibly_damaging(0.726) TCGA-05-4410-01 19 47151918 47151918 C A DACT3 Missense_Mutation p.G571C 0.34 deleterious(0) probably_damaging(0.992) TCGA-05-4410-01 19 47195022 47195022 C A PRKD2 Missense_Mutation p.G558C 0.19 deleterious(0) probably_damaging(0.989) TCGA-05-4410-01 19 47844849 47844849 C A C5AR2 Missense_Mutation p.L265I 0.27 tolerated(0.25) probably_damaging(0.949) TCGA-05-4410-01 19 49376588 49376588 G T PPP1R15A Missense_Mutation p.W33L 0.28 deleterious(0) possibly_damaging(0.901) TCGA-05-4410-01 19 51961666 51961666 C A SIGLEC8 5'UTR 0.25 TCGA-05-4410-01 19 52942160 52942160 C T ZNF534 Nonsense_Mutation p.R496* 0.24 TCGA-05-4410-01 19 53761993 53761993 G T VN1R2 Missense_Mutation p.R122I 0.29 deleterious(0) probably_damaging(0.985) TCGA-05-4410-01 19 53793907 53793907 C A BIRC8 5'UTR 0.35 TCGA-05-4410-01 19 53886837 53886837 C G ZNF525 3'UTR 0.16 TCGA-05-4410-01 19 54314336 54314336 G A NLRP12 Missense_Mutation p.P193S 0.07 tolerated(0.86) benign(0.046) TCGA-05-4410-01 19 54502988 54502988 C A CACNG6 Missense_Mutation p.F169L 0.33 tolerated(0.05) possibly_damaging(0.747) TCGA-05-4410-01 19 55098788 55098788 G T LILRA2 Missense_Mutation p.S476I 0.40 deleterious(0.04) possibly_damaging(0.797) TCGA-05-4410-01 19 55255328 55255328 G T KIR2DL3 Silent p.R152R 0.39 TCGA-05-4410-01 19 55282321 55282321 G T KIR2DL1 Missense_Mutation p.A19S 0.38 tolerated(0.45) probably_damaging(0.986) TCGA-05-4410-01 19 55325168 55325168 C A KIR2DL4 Missense_Mutation p.P244T 0.38 tolerated(0.09) possibly_damaging(0.73) TCGA-05-4410-01 19 55331374 55331374 G T KIR3DL1 Missense_Mutation p.A188S 0.31 tolerated(0.22) benign(0.135) TCGA-05-4410-01 19 55670618 55670618 C A DNAAF3 Missense_Mutation p.A547S 0.28 tolerated_low_confidence(0.22) benign(0.184) TCGA-05-4410-01 19 56370569 56370569 T C NLRP4 Missense_Mutation p.F604L 0.20 tolerated(0.63) benign(0.002) TCGA-05-4410-01 19 56424587 56424587 T A NLRP13 Missense_Mutation p.K199I 0.33 deleterious(0) benign(0.202) TCGA-05-4410-01 19 57744004 57744004 G A AURKC Missense_Mutation p.E131K 0.08 tolerated(0.09) benign(0.373) TCGA-05-4410-01 19 58370797 58370797 C T ZNF587 Silent p.L339L 0.30 TCGA-05-4410-01 19 58384403 58384403 G A ZNF814 Silent p.S785S 0.31 TCGA-05-4410-01 19 6732044 6732044 G C GPR108 Silent p.P416P 0.12 TCGA-05-4410-01 19 694911 694911 A T PRSS57 Missense_Mutation p.Y47N 0.27 deleterious(0) probably_damaging(0.998) TCGA-05-4410-01 19 9058698 9058698 G T MUC16 Missense_Mutation p.P9583H 0.18 unknown(0) TCGA-05-4410-01 19 9059073 9059073 G T MUC16 Missense_Mutation p.S9458Y 0.26 unknown(0) TCGA-05-4410-01 19 9075173 9075173 C G MUC16 Missense_Mutation p.M4091I 0.29 unknown(0) TCGA-05-4410-01 19 9082767 9082767 G T MUC16 Silent p.L3016L 0.20 TCGA-05-4410-01 19 9226195 9226195 A G OR7G1 Missense_Mutation p.L82P 0.28 deleterious(0.01) probably_damaging(0.977) TCGA-05-4410-01 1 10035810 10035810 G T NMNAT1 Missense_Mutation p.W92C 0.18 deleterious(0) probably_damaging(0.959) TCGA-05-4410-01 1 100515506 100515506 C A HIAT1 Silent p.I42I 0.15 TCGA-05-4410-01 1 100752704 100752704 G T RTCA Missense_Mutation p.G328V 0.20 deleterious(0) probably_damaging(0.988) TCGA-05-4410-01 1 100889851 100889851 C T CDC14A Missense_Mutation p.P128L 0.18 deleterious(0) possibly_damaging(0.9) TCGA-05-4410-01 1 100960421 100960421 G C CDC14A Missense_Mutation p.Q395H 0.07 deleterious(0) probably_damaging(0.997) TCGA-05-4410-01 1 100960422 100960422 G T CDC14A Nonsense_Mutation p.G396* 0.07 TCGA-05-4410-01 1 103377724 103377724 A T COL11A1 Silent p.P1359P 0.14 TCGA-05-4410-01 1 103428282 103428282 C A COL11A1 Missense_Mutation p.R984L 0.10 unknown(0) TCGA-05-4410-01 1 103444661 103444661 C G COL11A1 Splice_Site p.X871_splice 0.11 TCGA-05-4410-01 1 10394657 10394657 G A KIF1B Missense_Mutation p.V956M 0.26 deleterious(0) probably_damaging(0.976) TCGA-05-4410-01 1 104234119 104234119 C T AMY1B Nonsense_Mutation p.W331* 0.18 TCGA-05-4410-01 1 107979327 107979327 T A NTNG1 Nonsense_Mutation p.C432* 0.13 TCGA-05-4410-01 1 108315437 108315437 G C VAV3 Missense_Mutation p.L159V 0.17 tolerated(0.06) benign(0.125) TCGA-05-4410-01 1 110768631 110768631 G A KCNC4 Silent p.L550L 0.14 TCGA-05-4410-01 1 110768730 110768730 C T KCNC4 Silent p.N583N 0.22 TCGA-05-4410-01 1 11333506 11333506 G T UBIAD1 5'UTR 0.21 TCGA-05-4410-01 1 118045579 118045579 G T MAN1A2 Missense_Mutation p.A594S 0.13 tolerated(0.07) probably_damaging(0.964) TCGA-05-4410-01 1 120461117 120461117 G A NOTCH2 Silent p.P1947P 0.17 TCGA-05-4410-01 1 12414217 12414217 G T VPS13D Silent p.T3206T 0.22 TCGA-05-4410-01 1 1268139 1268139 T A TAS1R3 Missense_Mutation p.C410S 0.08 deleterious(0) probably_damaging(1) TCGA-05-4410-01 1 1387814 1387814 G T ATAD3C Silent p.T74T 0.22 TCGA-05-4410-01 1 1420477 1420477 C T ATAD3B Missense_Mutation p.R278W 0.22 deleterious(0) probably_damaging(0.996) TCGA-05-4410-01 1 145558896 145558896 T A ANKRD35 Missense_Mutation p.L172Q 0.17 deleterious(0) probably_damaging(0.973) TCGA-05-4410-01 1 147380368 147380368 G T GJA8 Missense_Mutation p.A96S 0.47 deleterious(0.01) probably_damaging(0.93) TCGA-05-4410-01 1 150469316 150469316 A T TARS2 Missense_Mutation p.S318C 0.08 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 1 152326249 152326249 C A FLG2 Missense_Mutation p.R1338I 0.04 benign(0.183) TCGA-05-4410-01 1 152382339 152382339 C A CRNN Missense_Mutation p.G407W 0.44 deleterious(0.01) probably_damaging(0.982) TCGA-05-4410-01 1 152538380 152538380 C T LCE3E 3'UTR 0.30 TCGA-05-4410-01 1 152636662 152636662 G A LCE2D Silent p.K27K 0.38 TCGA-05-4410-01 1 153177398 153177398 A T LELP1 Missense_Mutation p.Q72L 0.51 tolerated_low_confidence(0.21) unknown(0) TCGA-05-4410-01 1 153274952 153274952 G T PGLYRP3 Missense_Mutation p.Q221K 0.13 tolerated(0.45) benign(0.008) TCGA-05-4410-01 1 155165670 155165670 C G THBS3 Missense_Mutation p.E945Q 0.06 tolerated(1) benign(0) TCGA-05-4410-01 1 155233067 155233067 C A CLK2 Missense_Mutation p.R480L 0.50 tolerated(0.42) benign(0) TCGA-05-4410-01 1 155699058 155699058 G A DAP3 Silent p.K248K 0.35 TCGA-05-4410-01 1 155891679 155891679 G C KIAA0907 Missense_Mutation p.Q329E 0.06 deleterious(0.01) probably_damaging(0.957) TCGA-05-4410-01 1 156846197 156846197 G A NTRK1 Silent p.L546L 0.26 TCGA-05-4410-01 1 157805936 157805936 G T CD5L Missense_Mutation p.S22Y 0.09 tolerated(1) benign(0.007) TCGA-05-4410-01 1 158064101 158064101 A G KIRREL Splice_Site p.X574_splice 0.15 TCGA-05-4410-01 1 158262102 158262102 C A CD1C Missense_Mutation p.P186H 0.30 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 1 158516969 158516969 G - OR6Y1 Frame_Shift_Del p.I310Yfs*? 0.30 TCGA-05-4410-01 1 158596725 158596725 G A SPTA1 Silent p.L1913L 0.07 TCGA-05-4410-01 1 158647625 158647625 C A SPTA1 Splice_Site p.X271_splice 0.33 TCGA-05-4410-01 1 158746535 158746535 G A OR6N2 Silent p.I297I 0.08 TCGA-05-4410-01 1 159557685 159557685 C T APCS 5'UTR 0.36 TCGA-05-4410-01 1 160165750 160165750 C A CASQ1 Missense_Mutation p.P239T 0.31 deleterious(0) probably_damaging(0.991) TCGA-05-4410-01 1 160326401 160326401 C T NCSTN Missense_Mutation p.L551F 0.34 tolerated(0.35) benign(0.059) TCGA-05-4410-01 1 161138212 161138212 C G PPOX Intron 0.08 TCGA-05-4410-01 1 161205726 161205726 G T NR1I3 Missense_Mutation p.A50D 0.13 tolerated(0.19) benign(0.013) TCGA-05-4410-01 1 161479793 161479793 G T FCGR2A Missense_Mutation p.G183V 0.20 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 1 162337164 162337164 C A NOS1AP Silent p.R476R 0.32 TCGA-05-4410-01 1 165173231 165173231 G A LMX1A Silent p.L345L 0.06 TCGA-05-4410-01 1 166892009 166892009 C A ILDR2 Missense_Mutation p.E344D 0.36 tolerated(0.51) benign(0.012) TCGA-05-4410-01 1 167956802 167956802 G A DCAF6 Missense_Mutation p.D170N 0.12 deleterious(0) probably_damaging(0.995) TCGA-05-4410-01 1 172628540 172628540 C A FASLG Missense_Mutation p.P67T 0.19 tolerated(0.17) possibly_damaging(0.603) TCGA-05-4410-01 1 173594012 173594012 G C ANKRD45 Missense_Mutation p.T215R 0.07 tolerated(0.52) benign(0.008) TCGA-05-4410-01 1 17396687 17396687 T A PADI2 Missense_Mutation p.I554F 0.24 deleterious(0) possibly_damaging(0.799) TCGA-05-4410-01 1 175372526 175372526 C A TNR Silent p.R242R 0.45 TCGA-05-4410-01 1 176105681 176105681 T C RFWD2 Silent p.Q278Q 0.29 TCGA-05-4410-01 1 176668331 176668331 A G PAPPA2 Missense_Mutation p.T948A 0.05 tolerated(0.81) benign(0.001) TCGA-05-4410-01 1 176679225 176679225 G C PAPPA2 Missense_Mutation p.L1188F 0.29 deleterious(0.04) possibly_damaging(0.653) TCGA-05-4410-01 1 17674519 17674519 G A PADI4 Silent p.K377K 0.14 TCGA-05-4410-01 1 176769207 176769207 G T PAPPA2 Missense_Mutation p.C1714F 0.06 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 1 177250431 177250431 C A BRINP2 Missense_Mutation p.P707T 0.26 deleterious(0.02) probably_damaging(0.997) TCGA-05-4410-01 1 177250432 177250432 C G BRINP2 Missense_Mutation p.P707R 0.26 deleterious(0) probably_damaging(0.998) TCGA-05-4410-01 1 179054768 179054768 G A TOR3A Missense_Mutation p.E127K 0.05 tolerated(0.46) benign(0.097) TCGA-05-4410-01 1 179339140 179339140 T C AXDND1 Missense_Mutation p.W101R 0.12 deleterious(0) possibly_damaging(0.861) TCGA-05-4410-01 1 180159623 180159623 A G QSOX1 Missense_Mutation p.H399R 0.36 tolerated(0.09) benign(0.35) TCGA-05-4410-01 1 180885948 180885948 A T KIAA1614 Missense_Mutation p.R237W 0.33 deleterious(0) probably_damaging(0.937) TCGA-05-4410-01 1 182026091 182026091 T A ZNF648 Missense_Mutation p.K352I 0.18 deleterious(0.02) possibly_damaging(0.712) TCGA-05-4410-01 1 184692959 184692960 - A EDEM3 Frame_Shift_Ins p.W260Lfs*8 0.21 TCGA-05-4410-01 1 186031015 186031015 A G HMCN1 Missense_Mutation p.M2449V 0.14 benign(0.001) TCGA-05-4410-01 1 190067407 190067407 C A BRINP3 Missense_Mutation p.R681L 0.41 deleterious(0) benign(0.41) TCGA-05-4410-01 1 190067891 190067891 G T BRINP3 Missense_Mutation p.R520S 0.08 deleterious(0) probably_damaging(0.995) TCGA-05-4410-01 1 190250803 190250803 G C BRINP3 Missense_Mutation p.P105R 0.17 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 1 19478261 19478261 C A UBR4 Silent p.R2363R 0.23 TCGA-05-4410-01 1 196448362 196448362 C G KCNT2 Missense_Mutation p.V111L 0.23 tolerated(0.45) benign(0.052) TCGA-05-4410-01 1 197026157 197026157 G C F13B Missense_Mutation p.P386R 0.09 deleterious(0.04) possibly_damaging(0.877) TCGA-05-4410-01 1 197026458 197026458 G T F13B Missense_Mutation p.R315S 0.17 deleterious(0.02) possibly_damaging(0.796) TCGA-05-4410-01 1 197446847 197446847 C T CRB1 Silent p.V1353V 0.07 TCGA-05-4410-01 1 198668730 198668730 C G PTPRC Missense_Mutation p.H112Q 0.07 tolerated(0.14) benign(0.049) TCGA-05-4410-01 1 201763728 201763728 G C NAV1 Intron 0.07 TCGA-05-4410-01 1 202288240 202288240 C G LGR6 Missense_Mutation p.L937V 0.22 deleterious_low_confidence(0.04) benign(0.05) TCGA-05-4410-01 1 203008326 203008326 G T PPFIA4 Nonsense_Mutation p.E64* 0.31 TCGA-05-4410-01 1 20304510 20304510 C A PLA2G2A Missense_Mutation p.C97F 0.16 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 1 204379011 204379011 G A PPP1R15B Missense_Mutation p.S510L 0.09 deleterious(0.04) benign(0.081) TCGA-05-4410-01 1 204379097 204379097 G C PPP1R15B Missense_Mutation p.F481L 0.07 tolerated(0.14) possibly_damaging(0.866) TCGA-05-4410-01 1 205688745 205688745 T G NUCKS1 Missense_Mutation p.S148R 0.42 tolerated(0.71) possibly_damaging(0.883) TCGA-05-4410-01 1 206224651 206224651 C A AVPR1B Missense_Mutation p.L71M 0.41 deleterious(0.01) probably_damaging(0.962) TCGA-05-4410-01 1 209799050 209799050 C G LAMB3 Missense_Mutation p.S640T 0.39 tolerated(0.64) benign(0.004) TCGA-05-4410-01 1 211192227 211192227 G A KCNH1 Silent p.N310N 0.17 TCGA-05-4410-01 1 215953232 215953232 C A USH2A Missense_Mutation p.G3631V 0.26 probably_damaging(0.994) TCGA-05-4410-01 1 216040371 216040371 G A USH2A Silent p.I2941I 0.09 TCGA-05-4410-01 1 216420110 216420110 C A USH2A Missense_Mutation p.G876C 0.14 probably_damaging(1) TCGA-05-4410-01 1 22176624 22176624 C G HSPG2 Missense_Mutation p.Q2452H 0.09 probably_damaging(0.999) TCGA-05-4410-01 1 22222419 22222419 C T HSPG2 Silent p.Q80Q 0.14 TCGA-05-4410-01 1 227348290 227348290 C G CDC42BPA Missense_Mutation p.R216P 0.11 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 1 228109636 228109636 C A WNT9A Silent p.R227R 0.32 TCGA-05-4410-01 1 228481254 228481254 G T OBSCN Missense_Mutation p.D4119Y 0.36 probably_damaging(0.999) TCGA-05-4410-01 1 230415090 230415090 G T GALNT2 Silent p.V534V 0.27 TCGA-05-4410-01 1 231344888 231344888 G T TRIM67 Missense_Mutation p.R672M 0.15 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 1 233296137 233296137 C A PCNXL2 Missense_Mutation p.G1137W 0.20 deleterious(0) probably_damaging(1) TCGA-05-4410-01 1 233296138 233296138 C A PCNXL2 Silent p.V1136V 0.19 TCGA-05-4410-01 1 234510050 234510050 G - COA6 Frame_Shift_Del p.W66* 0.22 TCGA-05-4410-01 1 235945360 235945360 C A LYST Missense_Mutation p.M1630I 0.31 tolerated(0.39) benign(0) TCGA-05-4410-01 1 237550647 237550647 G T RYR2 Missense_Mutation p.A215S 0.31 benign(0.032) TCGA-05-4410-01 1 237732489 237732489 G T RYR2 Missense_Mutation p.W1156C 0.09 probably_damaging(1) TCGA-05-4410-01 1 237758850 237758850 G - RYR2 Frame_Shift_Del p.Q1498Kfs*30 0.20 TCGA-05-4410-01 1 237777418 237777418 G C RYR2 Missense_Mutation p.V1664L 0.35 benign(0.009) TCGA-05-4410-01 1 237944872 237944872 G T RYR2 Missense_Mutation p.S3963I 0.53 probably_damaging(0.987) TCGA-05-4410-01 1 237947327 237947327 C A RYR2 Silent p.L4105L 0.15 TCGA-05-4410-01 1 240494014 240494014 G A FMN2 Missense_Mutation p.D1517N 0.06 probably_damaging(0.942) TCGA-05-4410-01 1 241798993 241798993 C A CHML Missense_Mutation p.A26S 0.15 deleterious(0) probably_damaging(0.986) TCGA-05-4410-01 1 247587916 247587916 C A NLRP3 Missense_Mutation p.Q391K 0.35 tolerated(0.08) possibly_damaging(0.688) TCGA-05-4410-01 1 247902365 247902365 G T OR14K1 Missense_Mutation p.R150I 0.13 deleterious(0) benign(0.007) TCGA-05-4410-01 1 247978156 247978156 C A OR14A16 Missense_Mutation p.K292N 0.26 deleterious(0.03) possibly_damaging(0.77) TCGA-05-4410-01 1 247978337 247978337 T A OR14A16 Missense_Mutation p.Q232L 0.13 deleterious(0) benign(0.388) TCGA-05-4410-01 1 248128744 248128744 G C OR2AK2 Missense_Mutation p.W37C 0.07 tolerated(0.05) benign(0) TCGA-05-4410-01 1 248344254 248344254 T C OR2M2 Missense_Mutation p.F323L 0.07 tolerated_low_confidence(0.55) unknown(0) TCGA-05-4410-01 1 248487667 248487667 G C OR2M7 Silent p.L68L 0.12 TCGA-05-4410-01 1 248525501 248525501 C T OR2T4 Missense_Mutation p.H207Y 0.09 tolerated(0.14) benign(0.02) TCGA-05-4410-01 1 248525656 248525656 C G OR2T4 Missense_Mutation p.H258Q 0.12 tolerated(0.3) probably_damaging(0.947) TCGA-05-4410-01 1 248551682 248551682 C T OR2T6 Missense_Mutation p.T258M 0.20 deleterious(0.03) possibly_damaging(0.647) TCGA-05-4410-01 1 25824928 25824928 G C TMEM57 Missense_Mutation p.A656P 0.26 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 1 2938660 2938660 A G ACTRT2 Missense_Mutation p.Y137C 0.16 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 1 32259395 32259395 T C SPOCD1 Silent p.P829P 0.07 TCGA-05-4410-01 1 32842006 32842006 G A BSDC1 Missense_Mutation p.T355M 0.08 deleterious(0.02) benign(0.092) TCGA-05-4410-01 1 34204909 34204909 G C CSMD2 Missense_Mutation p.P694A 0.21 deleterious(0) probably_damaging(1) TCGA-05-4410-01 1 35365744 35365744 G T DLGAP3 Missense_Mutation p.P413H 0.13 deleterious(0) possibly_damaging(0.536) TCGA-05-4410-01 1 39816610 39816610 G A MACF1 Missense_Mutation p.A1645T 0.14 benign(0.004) TCGA-05-4410-01 1 39826501 39826501 G T MACF1 Missense_Mutation p.S2032I 0.15 benign(0.381) TCGA-05-4410-01 1 40128985 40128985 C A NT5C1A Missense_Mutation p.E185D 0.18 tolerated(0.06) possibly_damaging(0.785) TCGA-05-4410-01 1 40776820 40776820 T A COL9A2 Splice_Site p.X193_splice 0.26 TCGA-05-4410-01 1 40929215 40929215 G T ZFP69B Missense_Mutation p.R520I 0.09 deleterious(0.01) probably_damaging(0.979) TCGA-05-4410-01 1 41236592 41236592 G T NFYC 3'UTR 0.17 TCGA-05-4410-01 1 44432190 44432190 G T IPO13 Intron 0.26 TCGA-05-4410-01 1 46725742 46725742 G T RAD54L Silent p.L126L 0.14 TCGA-05-4410-01 1 47279690 47279690 G T CYP4B1 Missense_Mutation p.G244C 0.23 deleterious(0) probably_damaging(1) TCGA-05-4410-01 1 53237336 53237336 G T ZYG11B Missense_Mutation p.D281Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 1 53541610 53541610 A G PODN Missense_Mutation p.Y231C 0.25 deleterious(0.02) probably_damaging(0.947) TCGA-05-4410-01 1 54520164 54520164 G T TCEANC2 Missense_Mutation p.K23N 0.15 deleterious(0.01) possibly_damaging(0.489) TCGA-05-4410-01 1 54520165 54520165 G T TCEANC2 Missense_Mutation p.V24F 0.16 tolerated(0.06) benign(0.1) TCGA-05-4410-01 1 55145645 55145645 G T MROH7 Missense_Mutation p.V770F 0.18 deleterious(0) possibly_damaging(0.825) TCGA-05-4410-01 1 60287598 60287598 A T HOOK1 Silent p.A44A 0.20 TCGA-05-4410-01 1 62675725 62675725 G T L1TD1 Missense_Mutation p.D427Y 0.24 deleterious(0.02) unknown(0) TCGA-05-4410-01 1 62740301 62740301 G C KANK4 Missense_Mutation p.L159V 0.14 deleterious(0) probably_damaging(0.985) TCGA-05-4410-01 1 6639186 6639186 C A TAS1R1 Missense_Mutation p.Q690K 0.14 tolerated(0.06) probably_damaging(0.93) TCGA-05-4410-01 1 67292659 67292659 C A WDR78 Missense_Mutation p.G728V 0.13 deleterious(0.03) probably_damaging(0.958) TCGA-05-4410-01 1 75037751 75037751 C A C1orf173 Missense_Mutation p.A1215S 0.22 tolerated(0.28) benign(0.053) TCGA-05-4410-01 1 75038549 75038549 C A C1orf173 Missense_Mutation p.A949S 0.12 deleterious(0.01) possibly_damaging(0.643) TCGA-05-4410-01 1 78958396 78958396 T A PTGFR 5'UTR 0.21 TCGA-05-4410-01 1 78958528 78958528 G C PTGFR Missense_Mutation p.V34L 0.17 tolerated(0.17) benign(0.008) TCGA-05-4410-01 1 82433803 82433803 G T LPHN2 Missense_Mutation p.D798Y 0.17 deleterious(0.03) possibly_damaging(0.583) TCGA-05-4410-01 1 85592309 85592309 G A WDR63 Nonsense_Mutation p.W743* 0.08 TCGA-05-4410-01 1 89573837 89573837 C A GBP2 3'UTR 0.18 TCGA-05-4410-01 1 91178042 91178042 C A BARHL2 Missense_Mutation p.A331S 0.19 tolerated(0.06) unknown(0) TCGA-05-4410-01 1 91790257 91790257 C T HFM1 Missense_Mutation p.S801N 0.09 tolerated(0.27) benign(0.008) TCGA-05-4410-01 1 94342676 94342676 C A DNTTIP2 Missense_Mutation p.R272I 0.14 tolerated(0.23) benign(0.003) TCGA-05-4410-01 20 10393358 10393358 C T MKKS Missense_Mutation p.E269K 0.12 deleterious(0) possibly_damaging(0.823) TCGA-05-4410-01 20 13971225 13971225 A T SEL1L2 5'UTR 0.25 TCGA-05-4410-01 20 14306824 14306824 C G FLRT3 Silent p.L443L 0.23 TCGA-05-4410-01 20 1903195 1903195 T A SIRPA Missense_Mutation p.C331S 0.12 deleterious(0) probably_damaging(0.975) TCGA-05-4410-01 20 20079314 20079314 G C C20orf26 Missense_Mutation p.V239L 0.29 deleterious(0.01) benign(0.056) TCGA-05-4410-01 20 23017238 23017238 C A SSTR4 Missense_Mutation p.P373Q 0.09 tolerated(0.08) benign(0.143) TCGA-05-4410-01 20 32210976 32210976 A T CBFA2T2 Missense_Mutation p.Q198L 0.06 tolerated(0.05) possibly_damaging(0.727) TCGA-05-4410-01 20 34797802 34797802 G T EPB41L1 Silent p.P687P 0.27 TCGA-05-4410-01 20 35661274 35661274 C T RBL1 Missense_Mutation p.A726T 0.23 tolerated(0.14) benign(0.013) TCGA-05-4410-01 20 35802514 35802514 C T MROH8 Missense_Mutation p.C115Y 0.26 tolerated_low_confidence(0.06) possibly_damaging(0.509) TCGA-05-4410-01 20 3673254 3673254 G T SIGLEC1 Missense_Mutation p.T1315K 0.20 tolerated(0.11) benign(0.101) TCGA-05-4410-01 20 3804637 3804637 G T AP5S1 Missense_Mutation p.R99L 0.24 deleterious(0.04) benign(0.087) TCGA-05-4410-01 20 39984671 39984671 G A LPIN3 Silent p.Q600Q 0.07 TCGA-05-4410-01 20 43052943 43052943 G C HNF4A Intron 0.23 TCGA-05-4410-01 20 43058194 43058194 A T HNF4A Silent p.P438P 0.26 TCGA-05-4410-01 20 43385559 43385559 G T RIMS4 Missense_Mutation p.P192T 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-05-4410-01 20 46281260 46281260 G T NCOA3 Missense_Mutation p.A1353S 0.37 tolerated(0.19) benign(0.001) TCGA-05-4410-01 20 51870809 51870809 C A TSHZ2 Missense_Mutation p.A271D 0.28 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 20 56138753 56138753 G A PCK1 Missense_Mutation p.D311N 0.28 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 20 56191346 56191346 A T ZBP1 Silent p.T71T 0.12 TCGA-05-4410-01 20 60348144 60348144 C G CDH4 Missense_Mutation p.A161G 0.14 tolerated(0.34) benign(0.001) TCGA-05-4410-01 20 61537159 61537159 C T DIDO1 Intron 0.08 TCGA-05-4410-01 20 62199965 62199965 C A HELZ2 Missense_Mutation p.Q492H 0.11 tolerated(0.24) benign(0.001) TCGA-05-4410-01 20 7875833 7875833 C A HAO1 Missense_Mutation p.G254W 0.21 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 20 9561532 9561532 C A PAK7 Missense_Mutation p.G84C 0.20 tolerated(0.06) probably_damaging(1) TCGA-05-4410-01 21 10941907 10941907 C T TPTE Splice_Site p.X265_splice 0.04 TCGA-05-4410-01 21 19698799 19698799 C T TMPRSS15 Missense_Mutation p.R624K 0.12 tolerated(1) benign(0.004) TCGA-05-4410-01 21 22881254 22881254 C T NCAM2 Silent p.D720D 0.27 TCGA-05-4410-01 21 28210911 28210911 C A ADAMTS1 Missense_Mutation p.S684I 0.19 deleterious(0.01) probably_damaging(0.973) TCGA-05-4410-01 21 28337778 28337778 G C ADAMTS5 Missense_Mutation p.I311M 0.20 deleterious(0) probably_damaging(0.966) TCGA-05-4410-01 21 31023525 31023525 G A GRIK1 Silent p.H289H 0.09 TCGA-05-4410-01 21 31914007 31914007 C T KRTAP19-6 Missense_Mutation p.R49H 0.08 tolerated_low_confidence(0.59) unknown(0) TCGA-05-4410-01 21 31933543 31933543 G A KRTAP19-7 Silent p.G22G 0.09 TCGA-05-4410-01 21 32119316 32119316 C T KRTAP21-2 Missense_Mutation p.G69S 0.09 tolerated_low_confidence(0.88) unknown(0) TCGA-05-4410-01 21 32119317 32119317 A C KRTAP21-2 Missense_Mutation p.C68W 0.09 deleterious_low_confidence(0) unknown(0) TCGA-05-4410-01 21 43223078 43223078 C A PRDM15 Nonsense_Mutation p.E1279* 0.11 TCGA-05-4410-01 21 46689913 46689913 C A POFUT2 Missense_Mutation p.G285W 0.13 deleterious(0) possibly_damaging(0.875) TCGA-05-4410-01 21 46875463 46875463 G A COL18A1 Missense_Mutation p.G7S 0.11 unknown(0) TCGA-05-4410-01 21 47611049 47611049 T A LSS Missense_Mutation p.Y723F 0.11 tolerated(0.24) possibly_damaging(0.861) TCGA-05-4410-01 21 47768970 47768970 A T PCNT Missense_Mutation p.E359D 0.31 benign(0.062) TCGA-05-4410-01 21 47977571 47977571 G A DIP2A Missense_Mutation p.A1235T 0.24 tolerated(0.59) benign(0.126) TCGA-05-4410-01 22 16449184 16449184 G T OR11H1 Silent p.A207A 0.27 TCGA-05-4410-01 22 17072298 17072298 G T CCT8L2 Silent p.T381T 0.14 TCGA-05-4410-01 22 18138476 18138476 C G BCL2L13 5'UTR 0.05 TCGA-05-4410-01 22 18226769 18226769 C T BID Missense_Mutation p.G54D 0.09 deleterious(0) probably_damaging(0.994) TCGA-05-4410-01 22 19864759 19864759 T A TXNRD2 Splice_Site p.X482_splice 0.18 TCGA-05-4410-01 22 21152932 21152932 C A PI4KA Missense_Mutation p.S683I 0.17 deleterious(0) possibly_damaging(0.735) TCGA-05-4410-01 22 21343120 21343120 T C LZTR1 Silent p.S184S 0.05 TCGA-05-4410-01 22 22764469 22764469 G T IGLV1-40 Missense_Mutation p.G71C 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.679) TCGA-05-4410-01 22 22868570 22868570 G A ZNF280A Missense_Mutation p.T462M 0.07 deleterious(0) probably_damaging(0.987) TCGA-05-4410-01 22 23055496 23055496 G C IGLV3-21 Missense_Mutation p.W53C 0.23 deleterious(0) probably_damaging(1) TCGA-05-4410-01 22 25334188 25334188 A G TMEM211 Missense_Mutation p.W19R 0.21 deleterious(0) probably_damaging(1) TCGA-05-4410-01 22 26688935 26688935 G T SEZ6L Nonsense_Mutation p.E220* 0.20 TCGA-05-4410-01 22 26839173 26839173 G C ASPHD2 3'UTR 0.10 TCGA-05-4410-01 22 26902740 26902740 C T TFIP11 Splice_Site p.X121_splice 0.16 TCGA-05-4410-01 22 27012132 27012132 G C CRYBB1 Missense_Mutation p.A51G 0.23 tolerated(0.62) benign(0.004) TCGA-05-4410-01 22 30974931 30974931 G A PES1 Nonsense_Mutation p.Q526* 0.10 TCGA-05-4410-01 22 31342403 31342403 C A MORC2 Silent p.L55L 0.20 TCGA-05-4410-01 22 31533819 31533819 G C PLA2G3 Missense_Mutation p.Q315E 0.06 tolerated(0.57) benign(0.114) TCGA-05-4410-01 22 31688260 31688260 C T PIK3IP1 Splice_Site p.X24_splice 0.09 TCGA-05-4410-01 22 35789515 35789515 A T HMOX1 Missense_Mutation p.Q264L 0.20 tolerated(0.26) benign(0.027) TCGA-05-4410-01 22 38121726 38121726 G T TRIOBP Nonsense_Mutation p.E1055* 0.17 TCGA-05-4410-01 22 38822693 38822693 G C KCNJ4 3'UTR 0.19 TCGA-05-4410-01 22 38882078 38882078 C - DDX17 Frame_Shift_Del p.S687Lfs*8 0.08 TCGA-05-4410-01 22 39385550 39385550 G T APOBEC3B Missense_Mutation p.V220L 0.13 deleterious(0.01) possibly_damaging(0.886) TCGA-05-4410-01 22 39822857 39822857 C A TAB1 Missense_Mutation p.D357E 0.09 deleterious(0) probably_damaging(0.994) TCGA-05-4410-01 22 40367056 40367056 C G GRAP2 Missense_Mutation p.P321A 0.13 deleterious(0) probably_damaging(1) TCGA-05-4410-01 22 40417379 40417379 C T FAM83F Missense_Mutation p.R289W 0.07 deleterious(0) probably_damaging(1) TCGA-05-4410-01 22 40814545 40814545 C G MKL1 Missense_Mutation p.E633Q 0.07 tolerated(0.82) benign(0.222) TCGA-05-4410-01 22 41645438 41645438 C A RANGAP1 Missense_Mutation p.K530N 0.13 deleterious(0.01) benign(0.096) TCGA-05-4410-01 22 41745200 41745200 G T ZC3H7B Missense_Mutation p.D615Y 0.14 deleterious(0) probably_damaging(0.992) TCGA-05-4410-01 22 44237718 44237718 G T SULT4A1 Silent p.V88V 0.19 TCGA-05-4410-01 22 44237804 44237804 A T SULT4A1 Missense_Mutation p.L60M 0.15 tolerated(0.13) benign(0.14) TCGA-05-4410-01 22 45960905 45960905 C A FBLN1 Intron 0.16 TCGA-05-4410-01 22 45996263 45996263 G T FBLN1 Silent p.G683G 0.04 TCGA-05-4410-01 22 46655703 46655703 G C PKDREJ Missense_Mutation p.R1173G 0.23 tolerated(0.26) benign(0.046) TCGA-05-4410-01 22 49103622 49103622 G T FAM19A5 Missense_Mutation p.C119F 0.18 deleterious(0) probably_damaging(1) TCGA-05-4410-01 22 50719226 50719226 G A PLXNB2 Nonsense_Mutation p.Q1314* 0.12 TCGA-05-4410-01 22 50968942 50968942 G A ODF3B Silent p.Y243Y 0.12 TCGA-05-4410-01 2 103300762 103300762 C T SLC9A2 Silent p.A464A 0.24 TCGA-05-4410-01 2 10729817 10729817 G A NOL10 Nonsense_Mutation p.Q495* 0.31 TCGA-05-4410-01 2 107459973 107459973 C A ST6GAL2 Missense_Mutation p.G154V 0.39 benign(0.1) TCGA-05-4410-01 2 108488015 108488015 T A RGPD4 Silent p.T1185T 0.44 TCGA-05-4410-01 2 108488503 108488503 C G RGPD4 Missense_Mutation p.S1348C 0.07 tolerated(0.07) probably_damaging(0.99) TCGA-05-4410-01 2 113146970 113146970 A T RGPD8 Silent p.T1184T 0.19 TCGA-05-4410-01 2 121107469 121107469 C A INHBB 3'UTR 0.39 TCGA-05-4410-01 2 125204404 125204404 C A CNTNAP5 Missense_Mutation p.H270N 0.36 deleterious(0) possibly_damaging(0.679) TCGA-05-4410-01 2 125405454 125405454 G C CNTNAP5 Missense_Mutation p.E665Q 0.20 tolerated(0.97) benign(0.041) TCGA-05-4410-01 2 127808384 127808384 C A BIN1 Missense_Mutation p.M522I 0.38 deleterious(0.04) benign(0.024) TCGA-05-4410-01 2 128351140 128351140 A T MYO7B Missense_Mutation p.Q722L 0.30 tolerated(0.28) benign(0.014) TCGA-05-4410-01 2 128775444 128775444 T A SAP130 Missense_Mutation p.H79L 0.16 tolerated_low_confidence(0.12) benign(0.07) TCGA-05-4410-01 2 130738230 130738230 A T RAB6C Missense_Mutation p.Q181L 0.37 tolerated_low_confidence(0.08) benign(0.003) TCGA-05-4410-01 2 130738285 130738285 A T RAB6C Missense_Mutation p.Q199H 0.24 deleterious_low_confidence(0.04) benign(0.212) TCGA-05-4410-01 2 130832240 130832240 G T POTEF Silent p.S935S 0.26 TCGA-05-4410-01 2 131102988 131102988 G T IMP4 Missense_Mutation p.G79V 0.13 deleterious(0) probably_damaging(0.943) TCGA-05-4410-01 2 131521368 131521368 A T AMER3 Missense_Mutation p.T575S 0.38 tolerated(0.13) benign(0.021) TCGA-05-4410-01 2 132238109 132238109 C A TUBA3D Silent p.A281A 0.37 TCGA-05-4410-01 2 133539711 133539711 G C NCKAP5 Missense_Mutation p.P1558R 0.07 tolerated(0.05) possibly_damaging(0.684) TCGA-05-4410-01 2 136873041 136873041 C T CXCR4 Missense_Mutation p.E157K 0.18 tolerated(0.25) benign(0.223) TCGA-05-4410-01 2 141079550 141079550 T A LRP1B Missense_Mutation p.N4208Y 0.10 possibly_damaging(0.703) TCGA-05-4410-01 2 141747099 141747099 A T LRP1B Splice_Site p.X924_splice 0.31 TCGA-05-4410-01 2 1459997 1459997 G T TPO Silent p.G254G 0.11 TCGA-05-4410-01 2 152132019 152132019 T C NMI Missense_Mutation p.I205V 0.06 tolerated(0.16) benign(0.312) TCGA-05-4410-01 2 155711841 155711841 G T KCNJ3 3'UTR 0.30 TCGA-05-4410-01 2 15615813 15615813 C A NBAS Nonsense_Mutation p.E447* 0.12 TCGA-05-4410-01 2 158115854 158115854 G T GALNT5 Silent p.T420T 0.17 TCGA-05-4410-01 2 158178131 158178131 G A ERMN Silent p.D182D 0.29 TCGA-05-4410-01 2 160798647 160798647 G C PLA2R1 Missense_Mutation p.P1390A 0.36 tolerated(0.06) benign(0.001) TCGA-05-4410-01 2 162821590 162821590 G A SLC4A10 Silent p.L1022L 0.08 TCGA-05-4410-01 2 166172032 166172032 G T SCN2A Missense_Mutation p.G479W 0.07 deleterious(0.01) probably_damaging(1) TCGA-05-4410-01 2 16745340 16745340 A G FAM49A Missense_Mutation p.I72T 0.10 tolerated(0.47) benign(0.065) TCGA-05-4410-01 2 168099305 168099305 C A XIRP2 Missense_Mutation p.A468E 0.27 benign(0.133) TCGA-05-4410-01 2 169764700 169764700 C A G6PC2 3'Flank 0.34 TCGA-05-4410-01 2 170012818 170012818 C T LRP2 Missense_Mutation p.M4039I 0.07 benign(0.014) TCGA-05-4410-01 2 170163811 170163811 C G LRP2 Missense_Mutation p.G136A 0.06 possibly_damaging(0.685) TCGA-05-4410-01 2 171715317 171715317 G C GAD1 Missense_Mutation p.E509Q 0.25 tolerated(0.32) benign(0.07) TCGA-05-4410-01 2 173825890 173825890 G C RAPGEF4 Missense_Mutation p.R211P 0.04 deleterious(0.02) probably_damaging(0.995) TCGA-05-4410-01 2 176958400 176958400 G T HOXD13 Splice_Site p.X261_splice 0.20 TCGA-05-4410-01 2 179315274 179315274 G A PRKRA Intron 0.20 TCGA-05-4410-01 2 179398288 179398288 G T TTN Missense_Mutation p.L34352I 0.37 TCGA-05-4410-01 2 179411856 179411856 A T TTN Missense_Mutation p.C31466S 0.09 TCGA-05-4410-01 2 179431857 179431857 C T TTN Nonsense_Mutation p.W26334* 0.42 TCGA-05-4410-01 2 179473146 179473146 T A TTN Silent p.L17488L 0.24 TCGA-05-4410-01 2 179494983 179494983 G T TTN Missense_Mutation p.H14756N 0.34 TCGA-05-4410-01 2 179516903 179516903 G T TTN Missense_Mutation p.P13072Q 0.36 TCGA-05-4410-01 2 179583950 179583950 G T TTN Missense_Mutation p.T8056K 0.46 TCGA-05-4410-01 2 179602947 179602947 T A TTN Nonsense_Mutation p.K4745* 0.29 TCGA-05-4410-01 2 179611108 179611108 T C TTN Intron 0.40 TCGA-05-4410-01 2 179613326 179613326 C G TTN Intron 0.18 TCGA-05-4410-01 2 179664422 179664422 T C TTN Missense_Mutation p.T236A 0.16 TCGA-05-4410-01 2 182542478 182542478 G T NEUROD1 3'UTR 0.34 TCGA-05-4410-01 2 183993024 183993024 C T NUP35 Missense_Mutation p.P17L 0.07 deleterious(0) possibly_damaging(0.907) TCGA-05-4410-01 2 186670134 186670134 T C FSIP2 Silent p.D5456D 0.09 TCGA-05-4410-01 2 186670606 186670606 G T FSIP2 Missense_Mutation p.V5614L 0.25 benign(0.002) TCGA-05-4410-01 2 187626951 187626951 C A FAM171B Missense_Mutation p.L628M 0.35 tolerated(0.18) probably_damaging(1) TCGA-05-4410-01 2 187627260 187627260 C A FAM171B Missense_Mutation p.H731N 0.32 tolerated(0.18) possibly_damaging(0.601) TCGA-05-4410-01 2 188250312 188250312 T C CALCRL Missense_Mutation p.K4R 0.07 tolerated(0.66) benign(0.001) TCGA-05-4410-01 2 201437779 201437779 A T SGOL2 Missense_Mutation p.N904Y 0.06 deleterious(0.01) probably_damaging(0.967) TCGA-05-4410-01 2 201474029 201474029 C T AOX1 Intron 0.08 TCGA-05-4410-01 2 202494490 202494490 G A TMEM237 Silent p.T213T 0.41 TCGA-05-4410-01 2 208988977 208988977 G T CRYGD Silent p.R37R 0.32 TCGA-05-4410-01 2 210558918 210558918 G T MAP2 Missense_Mutation p.S675I 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-05-4410-01 2 21246498 21246498 C G APOB Missense_Mutation p.A835P 0.18 possibly_damaging(0.773) TCGA-05-4410-01 2 219000010 219000010 C T CXCR2 Silent p.V162V 0.35 TCGA-05-4410-01 2 219299256 219299256 C A VIL1 Missense_Mutation p.T503N 0.28 deleterious(0.01) benign(0.147) TCGA-05-4410-01 2 219527605 219527605 G A BCS1L Splice_Site p.X297_splice 0.08 TCGA-05-4410-01 2 219566748 219566748 G T STK36 3'UTR 0.37 TCGA-05-4410-01 2 225368392 225368392 T C CUL3 Missense_Mutation p.K452E 0.09 deleterious(0) probably_damaging(0.992) TCGA-05-4410-01 2 228004920 228004920 C A COL4A4 Missense_Mutation p.R50I 0.34 probably_damaging(0.992) TCGA-05-4410-01 2 234878910 234878910 C A TRPM8 Missense_Mutation p.T732N 0.12 tolerated(0.29) probably_damaging(0.996) TCGA-05-4410-01 2 237489326 237489326 A T ACKR3 Missense_Mutation p.K73M 0.37 deleterious(0.05) probably_damaging(0.962) TCGA-05-4410-01 2 238275663 238275663 G T COL6A3 Missense_Mutation p.L1723I 0.11 benign(0.08) TCGA-05-4410-01 2 239140941 239140941 G C AC016757.3 5'Flank 0.13 TCGA-05-4410-01 2 239990288 239990288 C G HDAC4 Silent p.P917P 0.23 TCGA-05-4410-01 2 240969557 240969557 C A OR6B2 Missense_Mutation p.C97F 0.28 deleterious(0) probably_damaging(1) TCGA-05-4410-01 2 241500849 241500849 G A DUSP28 Missense_Mutation p.E166K 0.14 tolerated(0.22) benign(0.009) TCGA-05-4410-01 2 24205850 24205850 G T UBXN2A Missense_Mutation p.L124F 0.13 deleterious(0.01) benign(0.231) TCGA-05-4410-01 2 242407622 242407622 G - FARP2 Frame_Shift_Del p.C654Lfs*26 0.32 TCGA-05-4410-01 2 27607565 27607565 G A PPM1G Missense_Mutation p.A267V 0.12 tolerated(0.37) benign(0) TCGA-05-4410-01 2 27857779 27857779 C A GPN1 Silent p.I153I 0.19 TCGA-05-4410-01 2 29446262 29446262 G A ALK Missense_Mutation p.T1102I 0.15 tolerated(0.09) benign(0.003) TCGA-05-4410-01 2 29519836 29519836 T G ALK Silent p.R579R 0.22 TCGA-05-4410-01 2 3341795 3341795 G A TSSC1 Silent p.Y84Y 0.08 TCGA-05-4410-01 2 33567972 33567972 C A LTBP1 Silent p.S1266S 0.15 TCGA-05-4410-01 2 3504654 3504654 G A ADI1 Silent p.I117I 0.17 TCGA-05-4410-01 2 40655707 40655707 C A SLC8A1 Missense_Mutation p.V572F 0.20 deleterious(0) possibly_damaging(0.866) TCGA-05-4410-01 2 40656124 40656124 C A SLC8A1 Missense_Mutation p.G433C 0.20 deleterious(0) probably_damaging(1) TCGA-05-4410-01 2 48925784 48925784 C A LHCGR Missense_Mutation p.C279F 0.11 deleterious(0) probably_damaging(0.997) TCGA-05-4410-01 2 50463973 50463973 C A NRXN1 Missense_Mutation p.R1207L 0.30 deleterious(0.03) probably_damaging(0.998) TCGA-05-4410-01 2 61010339 61010339 A G PAPOLG Silent p.L387L 0.22 TCGA-05-4410-01 2 61605508 61605508 C G USP34 Missense_Mutation p.D356H 0.09 deleterious(0.01) benign(0.157) TCGA-05-4410-01 2 62066780 62066780 C A FAM161A Silent p.V453V 0.22 TCGA-05-4410-01 2 69093692 69093692 G T BMP10 Missense_Mutation p.Q116K 0.21 tolerated(0.33) benign(0.003) TCGA-05-4410-01 2 74720290 74720290 C T TTC31 Missense_Mutation p.S502L 0.22 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-05-4410-01 2 77745707 77745707 C A LRRTM4 Missense_Mutation p.V430L 0.26 deleterious(0.01) possibly_damaging(0.496) TCGA-05-4410-01 2 79386508 79386508 G - REG3A Frame_Shift_Del p.S9Vfs*84 0.13 TCGA-05-4410-01 2 80530201 80530201 C G LRRTM1 Silent p.V248V 0.24 TCGA-05-4410-01 2 80646707 80646707 A C CTNNA2 Missense_Mutation p.H424P 0.13 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 2 80773070 80773070 G T CTNNA2 Missense_Mutation p.Q474H 0.15 tolerated(0.13) benign(0.001) TCGA-05-4410-01 2 80874769 80874769 C A CTNNA2 Silent p.L830L 0.15 TCGA-05-4410-01 2 85554096 85554096 A C TGOLN2 Silent p.V253V 0.09 TCGA-05-4410-01 2 88056426 88056426 G T PLGLB2 3'UTR 0.11 TCGA-05-4410-01 2 88390656 88390656 T C SMYD1 Silent p.N218N 0.11 TCGA-05-4410-01 2 88409967 88409967 C A SMYD1 Missense_Mutation p.P470H 0.29 deleterious_low_confidence(0.05) possibly_damaging(0.548) TCGA-05-4410-01 2 88828655 88828655 C A TEX37 Missense_Mutation p.P69H 0.11 deleterious_low_confidence(0) benign(0.086) TCGA-05-4410-01 2 89197011 89197011 G T IGKV5-2 Missense_Mutation p.R19M 0.27 deleterious(0.03) benign(0.025) TCGA-05-4410-01 2 89475967 89475967 G T IGKV2-24 Missense_Mutation p.P69T 0.27 deleterious(0.01) possibly_damaging(0.7) TCGA-05-4410-01 2 90139527 90139527 C A IGKV1D-16 Missense_Mutation p.L100M 0.22 deleterious(0.05) probably_damaging(0.927) TCGA-05-4410-01 2 90249175 90249175 C A IGKV1D-43 Missense_Mutation p.T44N 0.09 tolerated(0.19) benign(0.119) TCGA-05-4410-01 2 96652499 96652499 C T ANKRD36C Silent p.E162E 0.38 TCGA-05-4410-01 2 98349797 98349797 G T ZAP70 Silent p.T276T 0.20 TCGA-05-4410-01 3 101443556 101443556 C T CEP97 Silent p.P12P 0.18 TCGA-05-4410-01 3 101447769 101447769 G T CEP97 Missense_Mutation p.L145F 0.14 deleterious(0) probably_damaging(0.989) TCGA-05-4410-01 3 101574011 101574011 C G NFKBIZ Missense_Mutation p.L517V 0.05 deleterious(0.05) possibly_damaging(0.654) TCGA-05-4410-01 3 10291003 10291003 A T TATDN2 Missense_Mutation p.Q40L 0.19 tolerated_low_confidence(0.41) benign(0.001) TCGA-05-4410-01 3 108095392 108095392 C G HHLA2 Silent p.G404G 0.21 TCGA-05-4410-01 3 108189605 108189605 G T MYH15 Silent p.A461A 0.18 TCGA-05-4410-01 3 111342670 111342670 G T CD96 Splice_Site p.X433_splice 0.14 TCGA-05-4410-01 3 112358703 112358703 A G CCDC80 Missense_Mutation p.L17P 0.13 deleterious_low_confidence(0) benign(0.008) TCGA-05-4410-01 3 112648058 112648058 C A CD200R1 Nonsense_Mutation p.G167* 0.16 TCGA-05-4410-01 3 113737532 113737532 C G KIAA1407 Missense_Mutation p.E386Q 0.07 tolerated(1) benign(0.087) TCGA-05-4410-01 3 115560789 115560789 G T LSAMP Silent p.S274S 0.12 TCGA-05-4410-01 3 116163786 116163786 G T LSAMP Missense_Mutation p.S31R 0.22 tolerated(0.06) possibly_damaging(0.737) TCGA-05-4410-01 3 119466073 119466073 G T MAATS1 Nonsense_Mutation p.E672* 0.22 TCGA-05-4410-01 3 119887165 119887165 T A GPR156 Missense_Mutation p.M387L 0.32 deleterious(0.01) benign(0.111) TCGA-05-4410-01 3 121126217 121126217 G T STXBP5L Missense_Mutation p.W929C 0.28 tolerated(0.09) possibly_damaging(0.656) TCGA-05-4410-01 3 121417022 121417022 C G GOLGB1 Missense_Mutation p.R783T 0.25 benign(0.008) TCGA-05-4410-01 3 122278545 122278545 G A PARP9 5'UTR 0.29 TCGA-05-4410-01 3 125824755 125824755 C A ALDH1L1 Missense_Mutation p.V833L 0.08 tolerated(0.12) probably_damaging(0.991) TCGA-05-4410-01 3 12777078 12777078 G A TMEM40 Missense_Mutation p.L220F 0.11 deleterious(0.04) benign(0.244) TCGA-05-4410-01 3 127983561 127983561 G T EEFSEC Missense_Mutation p.M241I 0.25 tolerated(0.05) benign(0.057) TCGA-05-4410-01 3 130678149 130678149 G T ATP2C1 Missense_Mutation p.G322V 0.20 deleterious(0) probably_damaging(0.929) TCGA-05-4410-01 3 133478117 133478117 G C TF Missense_Mutation p.G383R 0.18 deleterious(0.04) probably_damaging(1) TCGA-05-4410-01 3 134670882 134670882 G T EPHB1 Missense_Mutation p.V265L 0.19 tolerated(0.39) benign(0.035) TCGA-05-4410-01 3 137850009 137850009 G T A4GNT Silent p.L30L 0.32 TCGA-05-4410-01 3 140397213 140397213 C A TRIM42 Silent p.R48R 0.09 TCGA-05-4410-01 3 143214218 143214218 G T SLC9A9 Missense_Mutation p.Q388K 0.25 tolerated(0.12) probably_damaging(0.91) TCGA-05-4410-01 3 145809634 145809634 C A PLOD2 Missense_Mutation p.G278C 0.18 deleterious(0) probably_damaging(0.995) TCGA-05-4410-01 3 145912942 145912942 T A PLSCR4 Missense_Mutation p.K305I 0.24 deleterious(0) probably_damaging(1) TCGA-05-4410-01 3 147114196 147114196 G A ZIC4 Missense_Mutation p.P94L 0.16 deleterious(0) benign(0.002) TCGA-05-4410-01 3 148459392 148459392 C T AGTR1 Silent p.T190T 0.10 TCGA-05-4410-01 3 14861919 14861919 G T FGD5 Missense_Mutation p.Q447H 0.35 deleterious(0.02) possibly_damaging(0.694) TCGA-05-4410-01 3 148847543 148847543 G T HPS3 Silent p.G11G 0.26 TCGA-05-4410-01 3 151083776 151083776 A G MED12L Silent p.V1073V 0.11 TCGA-05-4410-01 3 152553901 152553901 C G P2RY1 Nonsense_Mutation p.Y110* 0.19 TCGA-05-4410-01 3 154147120 154147120 G A GPR149 Silent p.N95N 0.22 TCGA-05-4410-01 3 156170725 156170725 G T KCNAB1 Missense_Mutation p.E119D 0.21 tolerated(0.35) benign(0.059) TCGA-05-4410-01 3 15686657 15686657 A G BTD Missense_Mutation p.T432A 0.10 tolerated(0.4) benign(0.002) TCGA-05-4410-01 3 158983078 158983078 T A IQCJ Silent p.P122P 0.18 TCGA-05-4410-01 3 164709192 164709192 C T SI Missense_Mutation p.R1686H 0.14 deleterious(0) probably_damaging(0.99) TCGA-05-4410-01 3 164906357 164906357 G T SLITRK3 Silent p.P754P 0.16 TCGA-05-4410-01 3 170244607 170244607 C G SLC7A14 Missense_Mutation p.G40A 0.32 tolerated(0.87) benign(0.001) TCGA-05-4410-01 3 172474945 172474945 A G ECT2 Missense_Mutation p.Q159R 0.06 tolerated(0.27) benign(0.005) TCGA-05-4410-01 3 173322611 173322611 G T NLGN1 Missense_Mutation p.G75W 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-05-4410-01 3 183907380 183907380 C A ABCF3 Missense_Mutation p.D383E 0.10 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 3 184045208 184045208 G T EIF4G1 Silent p.T1218T 0.23 TCGA-05-4410-01 3 184046479 184046479 C T EIF4G1 Silent p.L1345L 0.24 TCGA-05-4410-01 3 184052538 184052538 G T EIF4G1 Missense_Mutation p.A1555S 0.06 tolerated(0.05) possibly_damaging(0.512) TCGA-05-4410-01 3 184102866 184102866 G T CHRD Missense_Mutation p.G553V 0.25 deleterious(0) probably_damaging(1) TCGA-05-4410-01 3 186002472 186002472 C T DGKG Missense_Mutation p.E191K 0.23 deleterious(0.01) possibly_damaging(0.72) TCGA-05-4410-01 3 186515344 186515344 T A RFC4 Silent p.A90A 0.13 TCGA-05-4410-01 3 189587113 189587115 CGT GG TP63 Frame_Shift_Del p.P377Rfs*11 0.22 TCGA-05-4410-01 3 191075856 191075856 A G CCDC50 Missense_Mutation p.Q61R 0.12 tolerated(0.16) benign(0.331) TCGA-05-4410-01 3 193029655 193029655 C A ATP13A5 Missense_Mutation p.G799W 0.19 deleterious(0) probably_damaging(1) TCGA-05-4410-01 3 194081494 194081494 C A LRRC15 Silent p.T99T 0.23 TCGA-05-4410-01 3 21606120 21606120 G A ZNF385D Silent p.H74H 0.23 TCGA-05-4410-01 3 25832986 25832986 G T OXSM Missense_Mutation p.V159F 0.07 deleterious(0.03) benign(0.083) TCGA-05-4410-01 3 35724358 35724358 A C ARPP21 Missense_Mutation p.N50H 0.27 deleterious(0.03) possibly_damaging(0.674) TCGA-05-4410-01 3 35778812 35778812 C A ARPP21 Silent p.V500V 0.25 TCGA-05-4410-01 3 369946 369946 G T CHL1 Silent p.G98G 0.08 TCGA-05-4410-01 3 37458935 37458935 G T C3orf35 Missense_Mutation p.G60C 0.21 deleterious_low_confidence(0.01) probably_damaging(0.937) TCGA-05-4410-01 3 38768446 38768446 G T SCN10A Missense_Mutation p.A913D 0.23 deleterious(0) probably_damaging(1) TCGA-05-4410-01 3 38781150 38781150 C A SCN10A Missense_Mutation p.M712I 0.20 deleterious(0) possibly_damaging(0.808) TCGA-05-4410-01 3 38888221 38888221 G C SCN11A Missense_Mutation p.S1780R 0.15 deleterious_low_confidence(0.03) benign(0.005) TCGA-05-4410-01 3 38888709 38888709 A C SCN11A Missense_Mutation p.L1618V 0.19 deleterious(0.01) probably_damaging(0.99) TCGA-05-4410-01 3 38888711 38888711 G A SCN11A Missense_Mutation p.P1617L 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-05-4410-01 3 39170265 39170265 G T TTC21A Missense_Mutation p.D587Y 0.26 deleterious(0) probably_damaging(0.981) TCGA-05-4410-01 3 39226647 39226647 G T XIRP1 Silent p.A1430A 0.06 TCGA-05-4410-01 3 39308000 39308000 T C CX3CR1 Missense_Mutation p.M33V 0.28 tolerated(0.19) benign(0.005) TCGA-05-4410-01 3 42956151 42956151 G T ZNF662 Nonsense_Mutation p.E222* 0.32 TCGA-05-4410-01 3 48563006 48563006 T C PFKFB4 Missense_Mutation p.K362E 0.10 probably_damaging(0.985) TCGA-05-4410-01 3 48605544 48605544 G C COL7A1 Missense_Mutation p.F2618L 0.09 benign(0.22) TCGA-05-4410-01 3 48697224 48697224 C A CELSR3 Missense_Mutation p.E948D 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-05-4410-01 3 48697225 48697225 T A CELSR3 Missense_Mutation p.E948V 0.23 deleterious(0) probably_damaging(1) TCGA-05-4410-01 3 48929495 48929495 T G SLC25A20 Missense_Mutation p.Q39P 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-05-4410-01 3 49044234 49044234 C A P4HTM Missense_Mutation p.A529E 0.12 tolerated(0.1) probably_damaging(0.918) TCGA-05-4410-01 3 5025075 5025075 G T BHLHE40 Missense_Mutation p.G313C 0.12 deleterious(0) probably_damaging(0.927) TCGA-05-4410-01 3 51370646 51370646 C G DOCK3 Silent p.T1191T 0.08 TCGA-05-4410-01 3 56468700 56468700 T A ERC2 Silent p.T112T 0.10 TCGA-05-4410-01 3 58124020 58124020 G A FLNB Missense_Mutation p.A1656T 0.17 tolerated(0.06) possibly_damaging(0.616) TCGA-05-4410-01 3 61975455 61975455 G A PTPRG Nonsense_Mutation p.W116* 0.11 TCGA-05-4410-01 3 61975456 61975456 G T PTPRG Missense_Mutation p.W116C 0.10 tolerated(0.18) probably_damaging(0.935) TCGA-05-4410-01 3 62478012 62478012 T A CADPS Missense_Mutation p.D946V 0.28 deleterious(0) possibly_damaging(0.804) TCGA-05-4410-01 3 62478014 62478014 C A CADPS Missense_Mutation p.W945C 0.28 deleterious(0) possibly_damaging(0.759) TCGA-05-4410-01 3 73433421 73433421 T A PDZRN3 Missense_Mutation p.S766C 0.13 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 3 7621006 7621006 A G GRM7 Missense_Mutation p.I805V 0.09 tolerated(0.73) benign(0.235) TCGA-05-4410-01 3 88039965 88039965 C G HTR1F Silent p.S22S 0.11 TCGA-05-4410-01 3 89259220 89259220 C A EPHA3 Missense_Mutation p.L122M 0.09 tolerated(0.07) probably_damaging(0.997) TCGA-05-4410-01 3 89390124 89390124 G T EPHA3 Silent p.P291P 0.07 TCGA-05-4410-01 3 93605239 93605239 C A PROS1 Nonsense_Mutation p.E422* 0.16 TCGA-05-4410-01 3 93605240 93605240 C T PROS1 Silent p.L421L 0.17 TCGA-05-4410-01 3 93722539 93722539 C T ARL13B Missense_Mutation p.S56L 0.08 deleterious(0.03) possibly_damaging(0.649) TCGA-05-4410-01 3 95374413 95374413 G T MTHFD2P1 RNA 0.24 TCGA-05-4410-01 3 98073305 98073305 C A OR5K4 Nonsense_Mutation p.S203* 0.19 TCGA-05-4410-01 3 98188929 98188929 G C OR5K1 Missense_Mutation p.G170A 0.07 tolerated(0.2) benign(0.067) TCGA-05-4410-01 3 98189049 98189049 C A OR5K1 Missense_Mutation p.T210N 0.22 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 3 98216531 98216531 G A OR5K2 Missense_Mutation p.E3K 0.10 tolerated(0.55) benign(0.005) TCGA-05-4410-01 3 9839447 9839447 G A ARPC4 Silent p.P55P 0.11 TCGA-05-4410-01 4 100134761 100134761 A G ADH6 Splice_Site p.X88_splice 0.15 TCGA-05-4410-01 4 100264205 100264205 G A ADH1C Missense_Mutation p.P192L 0.17 benign(0.311) TCGA-05-4410-01 4 10027569 10027569 G T SLC2A9 5'Flank 0.30 TCGA-05-4410-01 4 100470252 100470252 G C TRMT10A Missense_Mutation p.P338R 0.16 deleterious_low_confidence(0.05) benign(0.209) TCGA-05-4410-01 4 100532334 100532334 G T MTTP Missense_Mutation p.A602S 0.14 tolerated(0.3) benign(0.02) TCGA-05-4410-01 4 103595107 103595107 C A MANBA Missense_Mutation p.D361Y 0.19 deleterious(0) probably_damaging(0.994) TCGA-05-4410-01 4 109738569 109738569 G C COL25A1 Missense_Mutation p.P649R 0.07 tolerated(0.43) probably_damaging(0.994) TCGA-05-4410-01 4 111441486 111441486 C A ENPEP Missense_Mutation p.P564Q 0.13 tolerated(0.07) benign(0.323) TCGA-05-4410-01 4 111554147 111554147 G T PITX2 Missense_Mutation p.T3N 0.08 tolerated_low_confidence(0.17) benign(0.011) TCGA-05-4410-01 4 114277294 114277294 C G ANK2 Missense_Mutation p.S2507C 0.23 probably_damaging(0.978) TCGA-05-4410-01 4 115767068 115767068 C A NDST4 Missense_Mutation p.A676S 0.20 deleterious(0.03) possibly_damaging(0.473) TCGA-05-4410-01 4 115997603 115997603 G A NDST4 Missense_Mutation p.P197L 0.21 deleterious(0) benign(0.091) TCGA-05-4410-01 4 118006189 118006189 C G TRAM1L1 Missense_Mutation p.E121Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 4 126336493 126336493 G T FAT4 Silent p.V2125V 0.17 TCGA-05-4410-01 4 126372972 126372972 C T FAT4 Missense_Mutation p.H3601Y 0.11 possibly_damaging(0.723) TCGA-05-4410-01 4 126412741 126412741 G T FAT4 Missense_Mutation p.G4922W 0.15 probably_damaging(0.971) TCGA-05-4410-01 4 128694753 128694753 C T SLC25A31 3'UTR 0.12 TCGA-05-4410-01 4 13370268 13370268 C A RAB28 Missense_Mutation p.V194L 0.21 tolerated(0.11) benign(0.355) TCGA-05-4410-01 4 134073017 134073017 C A PCDH10 Silent p.I574I 0.12 TCGA-05-4410-01 4 13610219 13610219 G A BOD1L1 Silent p.V559V 0.19 TCGA-05-4410-01 4 138449939 138449939 C A PCDH18 Silent p.G841G 0.17 TCGA-05-4410-01 4 138451090 138451090 A G PCDH18 Missense_Mutation p.V718A 0.12 tolerated(0.28) benign(0.217) TCGA-05-4410-01 4 159568212 159568212 G A RXFP1 Missense_Mutation p.G539S 0.15 deleterious(0) probably_damaging(0.98) TCGA-05-4410-01 4 163032464 163032464 C A FSTL5 Missense_Mutation p.G29C 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.641) TCGA-05-4410-01 4 166385731 166385731 C A CPE Missense_Mutation p.A166E 0.27 tolerated(0.07) probably_damaging(0.991) TCGA-05-4410-01 4 169322029 169322029 C T DDX60L Missense_Mutation p.V1147I 0.13 tolerated(0.45) benign(0.001) TCGA-05-4410-01 4 174448523 174448523 C T HAND2 Missense_Mutation p.E187K 0.06 tolerated(0.06) benign(0.019) TCGA-05-4410-01 4 177142722 177142722 A T ASB5 Silent p.T138T 0.29 TCGA-05-4410-01 4 17819644 17819644 G T NCAPG Missense_Mutation p.D351Y 0.30 deleterious(0) possibly_damaging(0.75) TCGA-05-4410-01 4 183522166 183522166 A T TENM3 Missense_Mutation p.T201S 0.09 tolerated_low_confidence(0.27) possibly_damaging(0.621) TCGA-05-4410-01 4 183676381 183676381 A G TENM3 Missense_Mutation p.S1621G 0.08 tolerated(0.08) benign(0.004) TCGA-05-4410-01 4 184930348 184930348 G C STOX2 Silent p.T119T 0.17 TCGA-05-4410-01 4 187527368 187527368 C G FAT1 Splice_Site p.X3403_splice 0.11 TCGA-05-4410-01 4 189012860 189012860 C G TRIML2 Silent p.A277A 0.10 TCGA-05-4410-01 4 189068295 189068295 G T TRIML1 Silent p.S392S 0.23 TCGA-05-4410-01 4 189068532 189068532 G T TRIML1 3'UTR 0.16 TCGA-05-4410-01 4 20543209 20543209 G A SLIT2 Missense_Mutation p.D704N 0.11 deleterious(0) probably_damaging(0.998) TCGA-05-4410-01 4 2306871 2306871 C T ZFYVE28 Missense_Mutation p.R399H 0.31 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-05-4410-01 4 24838915 24838915 C A CCDC149 Silent p.L199L 0.23 TCGA-05-4410-01 4 25780789 25780789 C A SEL1L3 Missense_Mutation p.G832C 0.12 tolerated(0.18) probably_damaging(1) TCGA-05-4410-01 4 26483736 26483736 G T CCKAR Missense_Mutation p.L271M 0.39 deleterious(0.02) benign(0.292) TCGA-05-4410-01 4 3201610 3201610 G A HTT Silent p.L1840L 0.27 TCGA-05-4410-01 4 3769780 3769780 G T ADRA2C 3'UTR 0.42 TCGA-05-4410-01 4 38774993 38774993 G T TLR10 Missense_Mutation p.T740N 0.42 tolerated(0.3) benign(0.041) TCGA-05-4410-01 4 47405711 47405711 C A GABRB1 Missense_Mutation p.A273E 0.10 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 4 47663854 47663854 T C CORIN Missense_Mutation p.K537E 0.12 deleterious(0.01) probably_damaging(0.992) TCGA-05-4410-01 4 53494232 53494232 C A USP46 Missense_Mutation p.K72N 0.24 tolerated(0.12) benign(0.005) TCGA-05-4410-01 4 56726659 56726659 A G EXOC1 Silent p.A69A 0.18 TCGA-05-4410-01 4 57193889 57193889 C T KIAA1211 Silent p.P1207P 0.18 TCGA-05-4410-01 4 62679563 62679563 C T LPHN3 Missense_Mutation p.P411L 0.10 deleterious(0.05) benign(0.173) TCGA-05-4410-01 4 68829211 68829211 C A TMPRSS11A 5'UTR 0.27 TCGA-05-4410-01 4 70156342 70156342 G T UGT2B28 Missense_Mutation p.G375C 0.23 tolerated(0.07) probably_damaging(0.94) TCGA-05-4410-01 4 70346427 70346427 C A UGT2B4 Silent p.V504V 0.24 TCGA-05-4410-01 4 70346556 70346556 G T UGT2B4 Silent p.V461V 0.19 TCGA-05-4410-01 4 70465104 70465104 T C UGT2A1 Missense_Mutation p.T452A 0.16 deleterious(0.03) benign(0.283) TCGA-05-4410-01 4 71066320 71066320 T C ODAM Splice_Site p.X176_splice 0.28 TCGA-05-4410-01 4 72897709 72897709 C A NPFFR2 Missense_Mutation p.R31S 0.28 tolerated_low_confidence(0.12) benign(0.353) TCGA-05-4410-01 4 72994430 72994430 A T NPFFR2 Missense_Mutation p.Q143L 0.16 deleterious(0.04) possibly_damaging(0.517) TCGA-05-4410-01 4 73956695 73956695 G A ANKRD17 Missense_Mutation p.S2217F 0.08 benign(0.099) TCGA-05-4410-01 4 75937772 75937772 C T PARM1 Missense_Mutation p.H61Y 0.09 tolerated(0.95) benign(0.439) TCGA-05-4410-01 4 76927368 76927368 G T CXCL9 Missense_Mutation p.H42N 0.15 tolerated(0.86) benign(0.065) TCGA-05-4410-01 4 79204011 79204011 G T FRAS1 Missense_Mutation p.C382F 0.12 possibly_damaging(0.84) TCGA-05-4410-01 4 80246593 80246593 T A NAA11 Missense_Mutation p.M147L 0.13 deleterious(0.02) benign(0.224) TCGA-05-4410-01 4 81188290 81188290 C A FGF5 Nonsense_Mutation p.Y104* 0.16 TCGA-05-4410-01 4 83347646 83347646 C A HNRNPDL Nonsense_Mutation p.G388* 0.08 TCGA-05-4410-01 4 83748691 83748691 G A SEC31A Missense_Mutation p.S1041L 0.07 tolerated(0.14) benign(0.001) TCGA-05-4410-01 4 87643512 87643512 G T PTPN13 Silent p.A511A 0.18 TCGA-05-4410-01 4 88583892 88583892 G T DMP1 Missense_Mutation p.S321I 0.10 deleterious(0) probably_damaging(0.958) TCGA-05-4410-01 4 88584284 88584284 G T DMP1 Missense_Mutation p.D452Y 0.16 deleterious(0) unknown(0) TCGA-05-4410-01 4 88989119 88989119 G A PKD2 Missense_Mutation p.D810N 0.11 tolerated(0.11) possibly_damaging(0.905) TCGA-05-4410-01 4 90856532 90856532 G A MMRN1 Silent p.L567L 0.14 TCGA-05-4410-01 4 96762029 96762029 G T PDHA2 Missense_Mutation p.R243M 0.26 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 5 102469323 102469323 G A PPIP5K2 Missense_Mutation p.C94Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 5 10258573 10258573 G T CCT5 Missense_Mutation p.D267Y 0.09 deleterious(0.03) benign(0.085) TCGA-05-4410-01 5 11236895 11236895 G C CTNND2 Missense_Mutation p.Q557E 0.30 tolerated(0.22) benign(0.047) TCGA-05-4410-01 5 112437459 112437459 C A MCC Nonsense_Mutation p.E459* 0.30 TCGA-05-4410-01 5 126156789 126156789 G C LMNB1 Missense_Mutation p.D450H 0.20 deleterious(0) probably_damaging(0.956) TCGA-05-4410-01 5 127487036 127487036 A T SLC12A2 Silent p.L737L 0.21 TCGA-05-4410-01 5 127622515 127622515 G T FBN2 Missense_Mutation p.H2303N 0.20 tolerated(0.56) benign(0.439) TCGA-05-4410-01 5 130828276 130828276 T A RAPGEF6 Missense_Mutation p.Q577L 0.33 deleterious(0) probably_damaging(0.998) TCGA-05-4410-01 5 131895051 131895051 G T RAD50 Missense_Mutation p.D69Y 0.26 deleterious(0) probably_damaging(1) TCGA-05-4410-01 5 136964068 136964068 C A KLHL3 Silent p.V503V 0.08 TCGA-05-4410-01 5 139231342 139231342 G A NRG2 Missense_Mutation p.S540L 0.11 deleterious(0.01) probably_damaging(0.99) TCGA-05-4410-01 5 140180780 140180780 G T PCDHA1 Intron 0.30 TCGA-05-4410-01 5 140476226 140476226 G T PCDHB2 Missense_Mutation p.G618C 0.21 deleterious_low_confidence(0.01) benign(0.193) TCGA-05-4410-01 5 140552728 140552728 G C PCDHB7 Silent p.L104L 0.27 TCGA-05-4410-01 5 140745190 140745190 C A PCDHGA5 Silent p.P431P 0.33 TCGA-05-4410-01 5 140763276 140763276 C A PCDHGA7 Missense_Mutation p.D270E 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-05-4410-01 5 140764644 140764644 G T PCDHGA7 Missense_Mutation p.Q726H 0.21 deleterious_low_confidence(0.04) benign(0.039) TCGA-05-4410-01 5 140773763 140773763 C G PCDHGA8 Missense_Mutation p.I461M 0.32 deleterious_low_confidence(0) possibly_damaging(0.633) TCGA-05-4410-01 5 140799740 140799740 G C PCDHGB7 Missense_Mutation p.D772H 0.14 tolerated(0.14) benign(0.061) TCGA-05-4410-01 5 141236969 141236969 T A PCDH1 Missense_Mutation p.H1056L 0.25 deleterious(0.02) possibly_damaging(0.677) TCGA-05-4410-01 5 150858948 150858948 G T SLC36A1 Missense_Mutation p.V353F 0.26 deleterious(0) probably_damaging(0.996) TCGA-05-4410-01 5 151054176 151054176 A T SPARC Silent p.T39T 0.31 TCGA-05-4410-01 5 151784225 151784225 G A NMUR2 Silent p.H150H 0.17 TCGA-05-4410-01 5 153077700 153077700 G T GRIA1 Missense_Mutation p.V421F 0.31 deleterious(0) probably_damaging(0.995) TCGA-05-4410-01 5 154181811 154181811 G T LARP1 Missense_Mutation p.R577L 0.26 deleterious(0) probably_damaging(0.94) TCGA-05-4410-01 5 156964958 156964958 G A ADAM19 Missense_Mutation p.S98L 0.06 tolerated(0.27) benign(0.002) TCGA-05-4410-01 5 168151447 168151447 C G SLIT3 Silent p.L771L 0.08 TCGA-05-4410-01 5 169672990 169672990 A G C5orf58 Missense_Mutation p.D61G 0.08 deleterious(0.01) possibly_damaging(0.908) TCGA-05-4410-01 5 170883614 170883614 G A FGF18 Silent p.S143S 0.12 TCGA-05-4410-01 5 172753012 172753012 C T STC2 Silent p.A51A 0.29 TCGA-05-4410-01 5 174869611 174869611 G T DRD1 Missense_Mutation p.H164Q 0.28 deleterious(0) probably_damaging(1) TCGA-05-4410-01 5 174870123 174870123 C A DRD1 5'UTR 0.37 TCGA-05-4410-01 5 175306929 175306929 C G CPLX2 Missense_Mutation p.R96G 0.34 tolerated(0.17) probably_damaging(0.993) TCGA-05-4410-01 5 175751758 175751758 G C SIMC1 Missense_Mutation p.Q289H 0.33 tolerated(0.24) probably_damaging(0.981) TCGA-05-4410-01 5 177019267 177019267 C T TMED9 Silent p.L18L 0.31 TCGA-05-4410-01 5 179050070 179050070 C T HNRNPH1 Missense_Mutation p.C22Y 0.28 deleterious(0) probably_damaging(0.986) TCGA-05-4410-01 5 180048740 180048740 G A FLT4 Missense_Mutation p.L608F 0.27 tolerated(0.11) probably_damaging(1) TCGA-05-4410-01 5 180051011 180051011 G T FLT4 Missense_Mutation p.A491E 0.26 tolerated(0.78) benign(0.001) TCGA-05-4410-01 5 19747068 19747068 G T CDH18 Missense_Mutation p.P169H 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-05-4410-01 5 21854810 21854810 G T CDH12 Missense_Mutation p.Q206K 0.31 deleterious(0.03) probably_damaging(0.99) TCGA-05-4410-01 5 21975201 21975201 C A CDH12 Silent p.V175V 0.33 TCGA-05-4410-01 5 23526486 23526486 C A PRDM9 Missense_Mutation p.P430H 0.27 tolerated(0.16) possibly_damaging(0.737) TCGA-05-4410-01 5 23527325 23527325 C A PRDM9 Missense_Mutation p.H710N 0.19 deleterious(0.01) probably_damaging(0.994) TCGA-05-4410-01 5 24491822 24491822 C G CDH10 Missense_Mutation p.G580A 0.14 tolerated(0.3) benign(0.405) TCGA-05-4410-01 5 24537761 24537761 C A CDH10 Missense_Mutation p.G85V 0.15 deleterious(0) probably_damaging(0.998) TCGA-05-4410-01 5 32712561 32712561 G T NPR3 Nonsense_Mutation p.E227* 0.08 TCGA-05-4410-01 5 33658332 33658332 C A ADAMTS12 Nonsense_Mutation p.G383* 0.22 TCGA-05-4410-01 5 35876290 35876290 T A IL7R Missense_Mutation p.F361Y 0.19 tolerated(0.66) benign(0.081) TCGA-05-4410-01 5 37162576 37162576 T C C5orf42 Missense_Mutation p.T2561A 0.26 deleterious(0) probably_damaging(1) TCGA-05-4410-01 5 39202684 39202684 G T FYB Missense_Mutation p.P137T 0.07 deleterious(0.02) possibly_damaging(0.804) TCGA-05-4410-01 5 39364588 39364588 C A C9 5'UTR 0.39 TCGA-05-4410-01 5 41010120 41010120 C T MROH2B Missense_Mutation p.S1066N 0.20 tolerated(0.39) benign(0.021) TCGA-05-4410-01 5 41018522 41018523 - T MROH2B Frame_Shift_Ins p.M895Nfs*25 0.24 TCGA-05-4410-01 5 41045869 41045869 G C MROH2B Nonsense_Mutation p.Y605* 0.21 TCGA-05-4410-01 5 52397233 52397233 C A MOCS2 Missense_Mutation p.R111S 0.24 deleterious(0) possibly_damaging(0.876) TCGA-05-4410-01 5 60053392 60053392 C A ELOVL7 Missense_Mutation p.G194W 0.29 deleterious(0) probably_damaging(1) TCGA-05-4410-01 5 60195463 60195463 C A ERCC8 Missense_Mutation p.V237F 0.28 tolerated(0.43) benign(0.001) TCGA-05-4410-01 5 63256918 63256918 A T HTR1A Missense_Mutation p.L210H 0.35 deleterious(0) probably_damaging(1) TCGA-05-4410-01 5 64082413 64082413 A C CWC27 Missense_Mutation p.K186N 0.15 tolerated(0.07) benign(0.424) TCGA-05-4410-01 5 65084126 65084126 C G NLN Silent p.L380L 0.20 TCGA-05-4410-01 5 66479590 66479590 G A CD180 Missense_Mutation p.L361F 0.28 tolerated(0.16) benign(0.254) TCGA-05-4410-01 5 6742603 6742603 G T PAPD7 Missense_Mutation p.V87L 0.33 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 5 68843832 68843832 C G OCLN Nonsense_Mutation p.Y443* 0.40 TCGA-05-4410-01 5 74807074 74807074 C T COL4A3BP Missense_Mutation p.E115K 0.27 tolerated_low_confidence(0.06) benign(0.079) TCGA-05-4410-01 5 7520898 7520898 C T ADCY2 Silent p.P152P 0.04 TCGA-05-4410-01 5 76721722 76721722 G T PDE8B Splice_Site p.X850_splice 0.10 TCGA-05-4410-01 5 79030273 79030273 G T CMYA5 Missense_Mutation p.M1895I 0.44 benign(0.001) TCGA-05-4410-01 5 82815315 82815315 C G VCAN Missense_Mutation p.P397R 0.24 deleterious(0.01) possibly_damaging(0.864) TCGA-05-4410-01 5 89756990 89756990 C A MBLAC2 Silent p.S278S 0.44 TCGA-05-4410-01 5 9066613 9066613 G T SEMA5A Missense_Mutation p.P740Q 0.24 deleterious(0) probably_damaging(0.936) TCGA-05-4410-01 5 916038 916038 G T TRIP13 Missense_Mutation p.G385C 0.04 deleterious(0.01) probably_damaging(0.993) TCGA-05-4410-01 6 100395638 100395638 C T MCHR2 Missense_Mutation p.R131K 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-05-4410-01 6 100403903 100403903 T C MCHR2 Missense_Mutation p.I41V 0.28 tolerated(0.48) benign(0.003) TCGA-05-4410-01 6 107824904 107824904 G T SOBP Missense_Mutation p.G47V 0.10 deleterious(0) probably_damaging(1) TCGA-05-4410-01 6 109190162 109190162 G T ARMC2 Missense_Mutation p.A143S 0.27 tolerated(0.76) benign(0.003) TCGA-05-4410-01 6 110300858 110300858 C A GPR6 Silent p.T181T 0.12 TCGA-05-4410-01 6 112496655 112496655 C A LAMA4 Missense_Mutation p.G406V 0.28 deleterious(0.02) possibly_damaging(0.697) TCGA-05-4410-01 6 114181761 114181761 C G MARCKS 3'UTR 0.07 TCGA-05-4410-01 6 117706999 117706999 G C ROS1 Silent p.L717L 0.11 TCGA-05-4410-01 6 117841007 117841007 C T DCBLD1 Silent p.P118P 0.10 TCGA-05-4410-01 6 125139561 125139561 T C NKAIN2 Silent p.Y188Y 0.06 TCGA-05-4410-01 6 128040881 128040881 C A THEMIS Missense_Mutation p.V655L 0.10 tolerated_low_confidence(0.14) benign(0.002) TCGA-05-4410-01 6 129468102 129468102 A T LAMA2 Splice_Site p.X274_splice 0.25 TCGA-05-4410-01 6 139564124 139564124 C A TXLNB Nonsense_Mutation p.E532* 0.09 TCGA-05-4410-01 6 145069549 145069549 C T UTRN Silent p.L2703L 0.10 TCGA-05-4410-01 6 150210584 150210584 G C RAET1E Missense_Mutation p.D174E 0.07 deleterious(0.05) possibly_damaging(0.627) TCGA-05-4410-01 6 153332638 153332638 A G RGS17 3'UTR 0.50 TCGA-05-4410-01 6 157505488 157505488 G A ARID1B Missense_Mutation p.E1157K 0.09 probably_damaging(0.99) TCGA-05-4410-01 6 160523695 160523695 G C IGF2R Missense_Mutation p.K2329N 0.46 deleterious(0) probably_damaging(0.969) TCGA-05-4410-01 6 160858107 160858107 C T SLC22A3 Silent p.F384F 0.07 TCGA-05-4410-01 6 161969909 161969909 C G PARK2 Missense_Mutation p.G354R 0.21 tolerated(0.4) benign(0.023) TCGA-05-4410-01 6 162394430 162394430 C A PARK2 Missense_Mutation p.G213V 0.23 deleterious(0.01) probably_damaging(0.935) TCGA-05-4410-01 6 169629714 169629714 C T THBS2 Missense_Mutation p.D738N 0.09 deleterious(0.04) benign(0.398) TCGA-05-4410-01 6 170033053 170033053 C A WDR27 Missense_Mutation p.C738F 0.19 deleterious(0) probably_damaging(0.987) TCGA-05-4410-01 6 170627006 170627006 G T FAM120B Silent p.L176L 0.27 TCGA-05-4410-01 6 17292055 17292055 C A RBM24 Missense_Mutation p.P139Q 0.24 tolerated(0.09) benign(0.052) TCGA-05-4410-01 6 17421832 17421832 A G CAP2 Missense_Mutation p.S16G 0.10 tolerated(0.7) benign(0) TCGA-05-4410-01 6 26217275 26217275 C T HIST1H2AE Nonsense_Mutation p.Q25* 0.11 TCGA-05-4410-01 6 26250535 26250535 T A HIST1H3F Missense_Mutation p.Y100F 0.09 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-05-4410-01 6 26252083 26252083 G C HIST1H2BH Missense_Mutation p.D69H 0.34 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-05-4410-01 6 26428229 26428229 G C BTN2A3P RNA 0.31 TCGA-05-4410-01 6 27222785 27222785 G C PRSS16 Missense_Mutation p.V451L 0.21 tolerated(0.06) benign(0.149) TCGA-05-4410-01 6 28217492 28217492 G C ZKSCAN4 Missense_Mutation p.L182V 0.09 tolerated(0.5) benign(0.014) TCGA-05-4410-01 6 28227250 28227250 G C NKAPL Missense_Mutation p.C34S 0.27 tolerated(0.67) unknown(0) TCGA-05-4410-01 6 28297162 28297162 C G ZSCAN31 Missense_Mutation p.R100P 0.38 deleterious(0.01) possibly_damaging(0.658) TCGA-05-4410-01 6 2900746 2900746 T C SERPINB9 Missense_Mutation p.S34G 0.34 deleterious(0.01) probably_damaging(0.975) TCGA-05-4410-01 6 29054080 29054080 C A OR2B3 3'UTR 0.24 TCGA-05-4410-01 6 32163899 32163899 C T NOTCH4 Missense_Mutation p.R1776Q 0.29 deleterious(0) probably_damaging(0.994) TCGA-05-4410-01 6 33052926 33052926 G T HLA-DPB1 Silent p.L188L 0.40 TCGA-05-4410-01 6 33287597 33287597 T C DAXX Silent p.L500L 0.33 TCGA-05-4410-01 6 34826039 34826039 C T UHRF1BP1 Missense_Mutation p.R636W 0.37 deleterious(0) possibly_damaging(0.762) TCGA-05-4410-01 6 39053883 39053883 T C GLP1R 3'UTR 0.36 TCGA-05-4410-01 6 39507930 39507930 C A KIF6 Missense_Mutation p.M498I 0.05 tolerated(0.4) benign(0.001) TCGA-05-4410-01 6 41704543 41704543 T C PGC 3'UTR 0.05 TCGA-05-4410-01 6 43109784 43109784 G C PTK7 Missense_Mutation p.K636N 0.35 tolerated(0.14) probably_damaging(0.981) TCGA-05-4410-01 6 43970830 43970830 G T C6orf223 Silent p.A232A 0.25 TCGA-05-4410-01 6 47682493 47682493 C T GPR115 Silent p.V504V 0.09 TCGA-05-4410-01 6 49986799 49986799 C A DEFB110 Missense_Mutation p.R32M 0.14 deleterious(0.02) possibly_damaging(0.506) TCGA-05-4410-01 6 50803856 50803856 G C TFAP2B Missense_Mutation p.E228D 0.06 tolerated(0.49) benign(0.042) TCGA-05-4410-01 6 53379289 53379289 T A GCLC Missense_Mutation p.L189F 0.07 deleterious(0.01) possibly_damaging(0.621) TCGA-05-4410-01 6 55145222 55145222 T A HCRTR2 Missense_Mutation p.I362N 0.33 deleterious(0) probably_damaging(0.989) TCGA-05-4410-01 6 55364081 55364081 G T HMGCLL1 Missense_Mutation p.L217M 0.24 deleterious(0.03) probably_damaging(0.997) TCGA-05-4410-01 6 572554 572554 C T EXOC2 Nonsense_Mutation p.W470* 0.23 TCGA-05-4410-01 6 62604730 62604730 C A KHDRBS2 Missense_Mutation p.G207V 0.31 deleterious(0.02) probably_damaging(0.946) TCGA-05-4410-01 6 66063486 66063486 T G EYS Missense_Mutation p.K442Q 0.10 tolerated(0.48) benign(0.007) TCGA-05-4410-01 6 66115103 66115103 T A EYS Silent p.P340P 0.27 TCGA-05-4410-01 6 66115229 66115229 A G EYS Silent p.C298C 0.11 TCGA-05-4410-01 6 70944628 70944628 C A COL9A1 Nonsense_Mutation p.E710* 0.40 TCGA-05-4410-01 6 73904298 73904298 A G KCNQ5 Missense_Mutation p.T673A 0.06 tolerated(0.43) possibly_damaging(0.777) TCGA-05-4410-01 6 75827165 75827165 G T COL12A1 Missense_Mutation p.D2484E 0.07 probably_damaging(0.999) TCGA-05-4410-01 6 75875431 75875431 C A COL12A1 Missense_Mutation p.W925C 0.11 probably_damaging(0.999) TCGA-05-4410-01 6 80878646 80878646 G T BCKDHB Nonsense_Mutation p.G178* 0.35 TCGA-05-4410-01 6 84233730 84233730 G C PRSS35 Missense_Mutation p.K190N 0.37 deleterious(0) probably_damaging(0.979) TCGA-05-4410-01 6 85446572 85446572 C A TBX18 Missense_Mutation p.G552V 0.12 tolerated(0.15) probably_damaging(0.998) TCGA-05-4410-01 6 87725964 87725964 G T HTR1E Missense_Mutation p.W304C 0.08 deleterious(0) probably_damaging(1) TCGA-05-4410-01 6 88768433 88768433 G - SPACA1 Splice_Site p.X124_splice 0.29 TCGA-05-4410-01 6 88773879 88773879 A G SPACA1 Missense_Mutation p.I225V 0.06 tolerated(0.38) benign(0.005) TCGA-05-4410-01 6 93956568 93956568 G C EPHA7 Missense_Mutation p.L890V 0.16 deleterious(0.02) benign(0.276) TCGA-05-4410-01 6 93967841 93967841 G T EPHA7 Missense_Mutation p.H696N 0.16 deleterious(0) possibly_damaging(0.488) TCGA-05-4410-01 6 97247514 97247514 G T GPR63 Missense_Mutation p.P32T 0.10 tolerated_low_confidence(0.49) benign(0.01) TCGA-05-4410-01 6 97562151 97562151 C G KLHL32 Missense_Mutation p.R374G 0.35 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 7 100085977 100085977 G A NYAP1 Silent p.Q211Q 0.06 TCGA-05-4410-01 7 100395326 100395326 C A ZAN Intron 0.24 TCGA-05-4410-01 7 100676223 100676223 G A MUC17 Missense_Mutation p.G509E 0.06 possibly_damaging(0.546) TCGA-05-4410-01 7 100679089 100679089 C A MUC17 Missense_Mutation p.N1464K 0.06 unknown(0) TCGA-05-4410-01 7 100679784 100679784 C A MUC17 Missense_Mutation p.T1696N 0.30 benign(0.027) TCGA-05-4410-01 7 100680500 100680500 A T MUC17 Missense_Mutation p.T1935S 0.06 unknown(0) TCGA-05-4410-01 7 100683216 100683216 C T MUC17 Missense_Mutation p.P2840L 0.21 unknown(0) TCGA-05-4410-01 7 100683456 100683456 T A MUC17 Missense_Mutation p.I2920N 0.05 possibly_damaging(0.621) TCGA-05-4410-01 7 103205894 103205894 T A RELN Missense_Mutation p.S1681C 0.25 deleterious(0.03) benign(0.443) TCGA-05-4410-01 7 107053032 107053032 T C COG5 Missense_Mutation p.E226G 0.22 deleterious(0.01) possibly_damaging(0.889) TCGA-05-4410-01 7 107432339 107432339 C A SLC26A3 Missense_Mutation p.L106F 0.22 deleterious(0) probably_damaging(1) TCGA-05-4410-01 7 107605093 107605093 G T LAMB1 Missense_Mutation p.H534Q 0.24 deleterious(0) possibly_damaging(0.691) TCGA-05-4410-01 7 113519998 113519998 G C PPP1R3A Silent p.S383S 0.26 TCGA-05-4410-01 7 119915076 119915076 C T KCND2 Silent p.G130G 0.10 TCGA-05-4410-01 7 120911417 120911417 C A CPED1 Missense_Mutation p.T934K 0.22 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 7 121608163 121608163 A C PTPRZ1 Missense_Mutation p.I95L 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-05-4410-01 7 126173818 126173818 G T GRM8 Missense_Mutation p.R540S 0.23 tolerated(0.75) benign(0.12) TCGA-05-4410-01 7 127013541 127013541 G C ZNF800 Missense_Mutation p.L617V 0.14 tolerated(0.07) possibly_damaging(0.592) TCGA-05-4410-01 7 127238614 127238614 C T FSCN3 Silent p.P362P 0.21 TCGA-05-4410-01 7 128446346 128446346 A T CCDC136 Missense_Mutation p.Q382L 0.40 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 7 128493676 128493676 G T FLNC Splice_Site p.X2121_splice 0.30 TCGA-05-4410-01 7 128496863 128496863 C T FLNC Silent p.N2483N 0.09 TCGA-05-4410-01 7 129847928 129847928 G T SSMEM1 Missense_Mutation p.V60F 0.24 tolerated(0.13) possibly_damaging(0.607) TCGA-05-4410-01 7 129906792 129906792 G T CPA2 Missense_Mutation p.G24V 0.05 deleterious(0) probably_damaging(0.958) TCGA-05-4410-01 7 131865426 131865426 C A PLXNA4 Silent p.G1186G 0.30 TCGA-05-4410-01 7 134260654 134260654 C A AKR1B15 Missense_Mutation p.P240T 0.10 deleterious(0) probably_damaging(0.978) TCGA-05-4410-01 7 134613570 134613570 G T CALD1 Missense_Mutation p.R46L 0.10 deleterious(0) unknown(0) TCGA-05-4410-01 7 135106985 135106985 T A CNOT4 Nonsense_Mutation p.K98* 0.26 TCGA-05-4410-01 7 135392916 135392916 A T SLC13A4 Missense_Mutation p.L104Q 0.06 deleterious(0) benign(0.362) TCGA-05-4410-01 7 137075975 137075975 A G DGKI Silent p.T1063T 0.22 TCGA-05-4410-01 7 137590467 137590467 C A CREB3L2 Missense_Mutation p.R299L 0.04 deleterious(0) probably_damaging(0.995) TCGA-05-4410-01 7 138944042 138944042 G T UBN2 Missense_Mutation p.E277D 0.32 tolerated(0.36) probably_damaging(0.952) TCGA-05-4410-01 7 140481411 140481411 C A BRAF Missense_Mutation p.G466V 0.22 deleterious(0) probably_damaging(0.936) TCGA-05-4410-01 7 141672757 141672757 C T TAS2R38 Missense_Mutation p.A245T 0.25 deleterious(0) probably_damaging(0.961) TCGA-05-4410-01 7 142000998 142000998 G T TRBV2 5'UTR 0.17 TCGA-05-4410-01 7 142460405 142460405 A T PRSS1 Missense_Mutation p.K193M 0.06 deleterious(0) possibly_damaging(0.897) TCGA-05-4410-01 7 142568025 142568025 G T EPHB6 Missense_Mutation p.G889V 0.14 tolerated(0.34) benign(0.062) TCGA-05-4410-01 7 142626598 142626598 T G TRPV5 Missense_Mutation p.T138P 0.21 tolerated(0.09) benign(0.005) TCGA-05-4410-01 7 142881157 142881157 G A TAS2R39 Missense_Mutation p.G216R 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-05-4410-01 7 143454063 143454063 T A CTAGE6 Missense_Mutation p.E230V 0.20 deleterious(0) probably_damaging(0.959) TCGA-05-4410-01 7 147336213 147336213 C T CNTNAP2 Missense_Mutation p.T638I 0.09 deleterious(0.02) possibly_damaging(0.782) TCGA-05-4410-01 7 149172163 149172163 T A ZNF746 Missense_Mutation p.Q417L 0.18 tolerated(0.06) possibly_damaging(0.888) TCGA-05-4410-01 7 149467542 149467542 C A ZNF467 Silent p.L46L 0.22 TCGA-05-4410-01 7 149483249 149483249 G T SSPO RNA 0.21 TCGA-05-4410-01 7 149500790 149500790 G T SSPO RNA 0.16 TCGA-05-4410-01 7 149509187 149509187 C G SSPO RNA 0.06 TCGA-05-4410-01 7 150164204 150164204 G T GIMAP8 Missense_Mutation p.G140W 0.23 deleterious(0.01) probably_damaging(0.983) TCGA-05-4410-01 7 150490383 150490383 G A TMEM176B Silent p.L131L 0.33 TCGA-05-4410-01 7 151932901 151932901 C A KMT2C Splice_Site p.X923_splice 0.10 TCGA-05-4410-01 7 151945260 151945260 T C KMT2C Silent p.S753S 0.04 TCGA-05-4410-01 7 1538688 1538688 G A INTS1 Missense_Mutation p.L354F 0.36 deleterious(0) probably_damaging(0.998) TCGA-05-4410-01 7 154862664 154862664 G C HTR5A Missense_Mutation p.E19Q 0.15 tolerated(0.49) benign(0.069) TCGA-05-4410-01 7 154862942 154862942 G C HTR5A-AS1 Silent p.L24L 0.20 TCGA-05-4410-01 7 154876005 154876005 C A HTR5A Missense_Mutation p.F294L 0.23 deleterious(0) probably_damaging(0.994) TCGA-05-4410-01 7 154876017 154876017 G T HTR5A Missense_Mutation p.W298C 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-05-4410-01 7 1589783 1589783 G T TMEM184A Silent p.I176I 0.45 TCGA-05-4410-01 7 18832988 18832988 G A HDAC9 Nonsense_Mutation p.W745* 0.25 TCGA-05-4410-01 7 20691247 20691247 G T ABCB5 Splice_Site p.X512_splice 0.31 TCGA-05-4410-01 7 20721145 20721145 T C ABCB5 Silent p.T575T 0.08 TCGA-05-4410-01 7 21640486 21640486 G T DNAH11 Missense_Mutation p.D1065Y 0.25 possibly_damaging(0.873) TCGA-05-4410-01 7 26251814 26251814 G T CBX3 Missense_Mutation p.D180Y 0.13 deleterious(0) probably_damaging(0.969) TCGA-05-4410-01 7 27213050 27213050 C A HOXA10 Silent p.A292A 0.17 TCGA-05-4410-01 7 30490920 30490920 G T NOD1 Silent p.R705R 0.19 TCGA-05-4410-01 7 31592719 31592719 C G CCDC129 Silent p.T53T 0.28 TCGA-05-4410-01 7 31877505 31877505 G A PDE1C Missense_Mutation p.T414I 0.19 deleterious(0.01) benign(0.009) TCGA-05-4410-01 7 33014286 33014286 G C FKBP9 Silent p.G93G 0.29 TCGA-05-4410-01 7 34014337 34014337 T C BMPER Missense_Mutation p.Y173H 0.13 deleterious(0.02) benign(0.069) TCGA-05-4410-01 7 34889208 34889208 T A NPSR1 Intron 0.36 TCGA-05-4410-01 7 36446030 36446030 G C ANLN Missense_Mutation p.G243A 0.29 tolerated(0.3) benign(0.006) TCGA-05-4410-01 7 36895239 36895239 G T ELMO1 Missense_Mutation p.L701M 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-05-4410-01 7 36959002 36959002 G C ELMO1 Intron 0.06 TCGA-05-4410-01 7 37960403 37960403 G A EPDR1 5'UTR 0.26 TCGA-05-4410-01 7 38295980 38295980 T A TRGJP2 Nonsense_Mutation p.K7* 0.18 TCGA-05-4410-01 7 39500316 39500316 T A POU6F2 Splice_Site p.X524_splice 0.44 TCGA-05-4410-01 7 4007027 4007027 G T SDK1 Missense_Mutation p.V503L 0.14 tolerated(0.1) possibly_damaging(0.542) TCGA-05-4410-01 7 43484130 43484130 C G HECW1 Silent p.P453P 0.35 TCGA-05-4410-01 7 43548638 43548638 G T HECW1 Nonsense_Mutation p.G1313* 0.20 TCGA-05-4410-01 7 43581559 43581559 G C HECW1 Missense_Mutation p.D1404H 0.07 deleterious(0) probably_damaging(0.958) TCGA-05-4410-01 7 44924058 44924058 C A PURB Missense_Mutation p.G297V 0.06 tolerated_low_confidence(0.18) unknown(0) TCGA-05-4410-01 7 45753510 45753510 G T ADCY1 Missense_Mutation p.M1092I 0.30 tolerated_low_confidence(0.33) benign(0) TCGA-05-4410-01 7 47944149 47944149 C A PKD1L1 Missense_Mutation p.R586M 0.12 deleterious(0.04) possibly_damaging(0.854) TCGA-05-4410-01 7 4796696 4796696 G T FOXK1 Silent p.G374G 0.34 TCGA-05-4410-01 7 48046855 48046855 C A SUN3 Silent p.L133L 0.15 TCGA-05-4410-01 7 48315597 48315597 T A ABCA13 Missense_Mutation p.S2112T 0.38 possibly_damaging(0.66) TCGA-05-4410-01 7 4874576 4874576 G T RADIL Missense_Mutation p.Q360K 0.29 tolerated(1) benign(0.018) TCGA-05-4410-01 7 50514655 50514655 T A FIGNL1 Nonsense_Mutation p.K111* 0.11 TCGA-05-4410-01 7 53104242 53104242 C A POM121L12 Missense_Mutation p.P293H 0.24 deleterious_low_confidence(0) benign(0.192) TCGA-05-4410-01 7 5410699 5410699 C A TNRC18 Nonsense_Mutation p.E1176* 0.09 TCGA-05-4410-01 7 550517 550517 G A PDGFA Missense_Mutation p.R128C 0.30 deleterious(0) probably_damaging(1) TCGA-05-4410-01 7 55224350 55224350 G T EGFR Missense_Mutation p.R377S 0.31 tolerated(0.47) benign(0.074) TCGA-05-4410-01 7 56146138 56146138 G T SUMF2 Intron 0.23 TCGA-05-4410-01 7 5680851 5680851 T A RNF216 Missense_Mutation p.Q772H 0.35 deleterious(0) probably_damaging(0.997) TCGA-05-4410-01 7 65429376 65429376 G A GUSB Nonsense_Mutation p.Q575* 0.11 TCGA-05-4410-01 7 72743399 72743399 C A FKBP6 Missense_Mutation p.P71H 0.20 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 7 81350104 81350104 G T HGF Missense_Mutation p.L410I 0.26 tolerated(0.86) possibly_damaging(0.498) TCGA-05-4410-01 7 8183563 8183563 C T ICA1 Missense_Mutation p.E282K 0.32 tolerated(0.46) benign(0.038) TCGA-05-4410-01 7 82580348 82580348 T - PCLO Frame_Shift_Del p.T3186Qfs*17 0.17 TCGA-05-4410-01 7 82585749 82585749 C T PCLO Missense_Mutation p.R1507K 0.06 unknown(0) TCGA-05-4410-01 7 84685079 84685079 C A SEMA3D Missense_Mutation p.S272I 0.15 tolerated(0.11) possibly_damaging(0.701) TCGA-05-4410-01 7 84697561 84697561 C T SEMA3D Missense_Mutation p.G179S 0.09 deleterious(0) probably_damaging(1) TCGA-05-4410-01 7 87483519 87483519 C A SLC25A40 Missense_Mutation p.L88F 0.20 tolerated(0.09) possibly_damaging(0.609) TCGA-05-4410-01 7 88423497 88423497 A T C7orf62 Nonstop_Mutation p.*254Kext*2 0.25 TCGA-05-4410-01 7 88965846 88965846 G T ZNF804B Missense_Mutation p.A1184S 0.22 tolerated(0.49) benign(0.043) TCGA-05-4410-01 7 88966076 88966076 C T ZNF804B Silent p.P1260P 0.06 TCGA-05-4410-01 7 90377056 90377056 G T CDK14 Nonsense_Mutation p.G126* 0.07 TCGA-05-4410-01 7 90895699 90895699 G T FZD1 Missense_Mutation p.G502C 0.06 deleterious(0) probably_damaging(1) TCGA-05-4410-01 7 91672051 91672051 G A AKAP9 Missense_Mutation p.E1710K 0.09 benign(0.184) TCGA-05-4410-01 7 92164096 92164096 A G RBM48 Missense_Mutation p.R277G 0.16 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 7 92731987 92731987 C T SAMD9 Missense_Mutation p.G1142R 0.07 tolerated(0.75) benign(0.001) TCGA-05-4410-01 7 92733814 92733814 T A SAMD9 Missense_Mutation p.I533L 0.05 tolerated(0.23) benign(0.117) TCGA-05-4410-01 7 92734749 92734749 C A SAMD9 Missense_Mutation p.R221L 0.26 deleterious(0) possibly_damaging(0.785) TCGA-05-4410-01 7 92837962 92837962 A - HEPACAM2 Frame_Shift_Del p.C315Afs*7 0.16 TCGA-05-4410-01 7 94750039 94750039 G T PPP1R9A Missense_Mutation p.G515V 0.17 deleterious(0) probably_damaging(1) TCGA-05-4410-01 7 95125234 95125234 G T ASB4 Missense_Mutation p.A118S 0.21 tolerated(0.56) benign(0.067) TCGA-05-4410-01 7 96747046 96747046 G A ACN9 Missense_Mutation p.R4Q 0.29 tolerated(0.61) benign(0.077) TCGA-05-4410-01 7 99447310 99447310 C T CYP3A43 Silent p.L221L 0.24 TCGA-05-4410-01 7 99463537 99463537 G T CYP3A43 Silent p.L476L 0.10 TCGA-05-4410-01 8 100994230 100994230 C G RGS22 Missense_Mutation p.E1099Q 0.17 deleterious(0.02) probably_damaging(0.982) TCGA-05-4410-01 8 102705114 102705114 T C NCALD Missense_Mutation p.K130R 0.22 tolerated(0.13) benign(0.072) TCGA-05-4410-01 8 10467868 10467868 G A RP1L1 Missense_Mutation p.P1247L 0.19 benign(0.216) TCGA-05-4410-01 8 110448582 110448582 C T PKHD1L1 Missense_Mutation p.T1174I 0.23 deleterious(0.01) probably_damaging(0.932) TCGA-05-4410-01 8 110464485 110464485 C A PKHD1L1 Silent p.I2161I 0.35 TCGA-05-4410-01 8 110497320 110497320 G C PKHD1L1 Missense_Mutation p.Q3208H 0.33 tolerated(0.26) benign(0.085) TCGA-05-4410-01 8 113301627 113301627 C A CSMD3 Missense_Mutation p.G3039C 0.39 deleterious(0) probably_damaging(1) TCGA-05-4410-01 8 113668414 113668414 A T CSMD3 Silent p.R991R 0.18 TCGA-05-4410-01 8 124664765 124664765 G T KLHL38 Missense_Mutation p.S134R 0.43 tolerated(0.2) benign(0.197) TCGA-05-4410-01 8 131414157 131414157 A T ASAP1 Missense_Mutation p.F11L 0.34 tolerated_low_confidence(0.5) unknown(0) TCGA-05-4410-01 8 133885314 133885314 G C TG Missense_Mutation p.R162S 0.33 tolerated(0.4) benign(0.052) TCGA-05-4410-01 8 135524846 135524846 T C ZFAT Splice_Site p.X1079_splice 0.05 TCGA-05-4410-01 8 139158255 139158255 C A FAM135B Nonsense_Mutation p.E1163* 0.08 TCGA-05-4410-01 8 140631039 140631039 G T KCNK9 Missense_Mutation p.T196K 0.43 deleterious(0) probably_damaging(0.997) TCGA-05-4410-01 8 143994039 143994039 G T CYP11B2 Silent p.G435G 0.33 TCGA-05-4410-01 8 144332450 144332450 G T ZFP41 Missense_Mutation p.G146V 0.29 deleterious(0) benign(0.343) TCGA-05-4410-01 8 144810181 144810181 C G FAM83H Missense_Mutation p.A484P 0.38 tolerated(0.28) benign(0.003) TCGA-05-4410-01 8 22058733 22058733 C A BMP1 Intron 0.06 TCGA-05-4410-01 8 25168016 25168016 G T DOCK5 Missense_Mutation p.R429L 0.12 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 8 27295394 27295394 A C PTK2B Missense_Mutation p.H547P 0.17 deleterious(0) probably_damaging(1) TCGA-05-4410-01 8 30705979 30705979 G T TEX15 Silent p.S185S 0.06 TCGA-05-4410-01 8 30977913 30977913 G T WRN Missense_Mutation p.W868L 0.12 deleterious(0) probably_damaging(1) TCGA-05-4410-01 8 35541233 35541233 G A UNC5D Missense_Mutation p.V247I 0.19 tolerated(0.19) benign(0.304) TCGA-05-4410-01 8 36671868 36671868 C T KCNU1 Silent p.F292F 0.29 TCGA-05-4410-01 8 36766906 36766906 G A KCNU1 Silent p.P728P 0.13 TCGA-05-4410-01 8 39646227 39646227 G T ADAM2 Silent p.V201V 0.14 TCGA-05-4410-01 8 41542077 41542077 G T ANK1 Missense_Mutation p.P1549T 0.14 deleterious(0.03) probably_damaging(1) TCGA-05-4410-01 8 43211972 43211972 C A POTEA RNA 0.13 TCGA-05-4410-01 8 52232456 52232456 G T PXDNL Missense_Mutation p.R1463S 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.726) TCGA-05-4410-01 8 61484660 61484660 G T RAB2A Missense_Mutation p.Q58H 0.33 deleterious(0.02) possibly_damaging(0.604) TCGA-05-4410-01 8 67958151 67958151 C A COPS5 Missense_Mutation p.K272N 0.24 deleterious(0) probably_damaging(1) TCGA-05-4410-01 8 70744859 70744859 G T SLCO5A1 Missense_Mutation p.A17E 0.26 tolerated_low_confidence(0.27) benign(0.082) TCGA-05-4410-01 8 73848595 73848595 G T KCNB2 Missense_Mutation p.L335F 0.26 deleterious(0) probably_damaging(0.994) TCGA-05-4410-01 8 75932315 75932315 G T CRISPLD1 Splice_Site p.X415_splice 0.40 TCGA-05-4410-01 8 77690640 77690640 T A ZFHX4 Missense_Mutation p.I1097N 0.10 benign(0.04) TCGA-05-4410-01 8 77763548 77763548 C A ZFHX4 Missense_Mutation p.P1464H 0.25 probably_damaging(0.95) TCGA-05-4410-01 8 77767649 77767649 G T ZFHX4 Missense_Mutation p.G2831V 0.23 benign(0.099) TCGA-05-4410-01 8 89086857 89086857 C A MMP16 Missense_Mutation p.D400Y 0.14 deleterious(0) possibly_damaging(0.758) TCGA-05-4410-01 8 91063968 91063968 G T DECR1 Splice_Site p.X316_splice 0.31 TCGA-05-4410-01 8 96281413 96281413 G A C8orf37 Missense_Mutation p.A2V 0.09 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 8 99042728 99042728 G C MATN2 Missense_Mutation p.E799Q 0.31 deleterious(0.05) benign(0.261) TCGA-05-4410-01 8 99169910 99169910 G A POP1 Missense_Mutation p.G829D 0.32 tolerated(0.45) benign(0.001) TCGA-05-4410-01 9 102607124 102607124 C A NR4A3 Missense_Mutation p.S494Y 0.18 deleterious(0) possibly_damaging(0.891) TCGA-05-4410-01 9 103084051 103084051 G A TEX10 Missense_Mutation p.S661L 0.07 deleterious(0) probably_damaging(0.945) TCGA-05-4410-01 9 104319843 104319843 G C RNF20 Missense_Mutation p.E783Q 0.10 deleterious(0.05) possibly_damaging(0.573) TCGA-05-4410-01 9 107331853 107331853 C T OR13C8 Silent p.I135I 0.19 TCGA-05-4410-01 9 107361006 107361006 G T OR13C5 Missense_Mutation p.S230Y 0.25 deleterious(0.01) probably_damaging(0.941) TCGA-05-4410-01 9 108363572 108363572 C G FKTN Missense_Mutation p.F104L 0.07 tolerated(1) benign(0.001) TCGA-05-4410-01 9 109686588 109686589 - AGCTCA ZNF462 In_Frame_Ins p.Q134_A135dup 0.11 TCGA-05-4410-01 9 112705122 112705122 G T PALM2 Missense_Mutation p.G218V 0.19 deleterious(0) probably_damaging(0.943) TCGA-05-4410-01 9 113132270 113132270 C G SVEP1 Missense_Mutation p.G3543R 0.08 probably_damaging(0.994) TCGA-05-4410-01 9 113169032 113169032 C A SVEP1 Nonsense_Mutation p.G2950* 0.14 TCGA-05-4410-01 9 114359635 114359635 T G PTGR1 Missense_Mutation p.E23A 0.09 deleterious(0.04) benign(0.058) TCGA-05-4410-01 9 115600941 115600941 G C SNX30 Silent p.V326V 0.14 TCGA-05-4410-01 9 115806314 115806314 C A ZFP37 Missense_Mutation p.R195I 0.16 deleterious(0.05) benign(0.007) TCGA-05-4410-01 9 116956729 116956729 G T COL27A1 Missense_Mutation p.G688W 0.14 unknown(0) TCGA-05-4410-01 9 117838396 117838396 C T TNC Silent p.L955L 0.17 TCGA-05-4410-01 9 12704606 12704606 G T TYRP1 Missense_Mutation p.G388W 0.28 deleterious(0.03) probably_damaging(1) TCGA-05-4410-01 9 13150681 13150681 T A MPDZ Missense_Mutation p.E1153D 0.12 tolerated(0.06) benign(0.33) TCGA-05-4410-01 9 131597919 131597919 C T CCBL1 Missense_Mutation p.E295K 0.11 deleterious(0) probably_damaging(0.996) TCGA-05-4410-01 9 131670448 131670448 C G LRRC8A Missense_Mutation p.I335M 0.05 tolerated(0.14) benign(0.206) TCGA-05-4410-01 9 133962940 133962940 G C LAMC3 Silent p.T1436T 0.22 TCGA-05-4410-01 9 134039265 134039265 G T NUP214 Missense_Mutation p.S911I 0.20 benign(0.268) TCGA-05-4410-01 9 135204107 135204107 T A SETX Nonsense_Mutation p.R960* 0.08 TCGA-05-4410-01 9 135447814 135447814 C G C9orf171 Missense_Mutation p.R294G 0.07 deleterious(0.03) benign(0.169) TCGA-05-4410-01 9 137703228 137703228 C T COL5A1 Missense_Mutation p.P1191L 0.16 unknown(0) TCGA-05-4410-01 9 138589372 138589372 C A SOHLH1 Silent p.T149T 0.21 TCGA-05-4410-01 9 139905706 139905706 T A ABCA2 Missense_Mutation p.Y1952F 0.25 tolerated(1) probably_damaging(0.999) TCGA-05-4410-01 9 14720334 14720334 G T CER1 Nonsense_Mutation p.C186* 0.15 TCGA-05-4410-01 9 19078172 19078172 A C HAUS6 Splice_Site p.X397_splice 0.30 TCGA-05-4410-01 9 19352178 19352178 G T DENND4C Nonsense_Mutation p.E1486* 0.28 TCGA-05-4410-01 9 20881987 20881987 G C FOCAD Missense_Mutation p.G812A 0.05 tolerated(0.08) benign(0.215) TCGA-05-4410-01 9 20907241 20907241 G T FOCAD Missense_Mutation p.Q906H 0.24 deleterious(0) probably_damaging(0.979) TCGA-05-4410-01 9 20953055 20953055 G C FOCAD Missense_Mutation p.G1375R 0.18 deleterious(0) probably_damaging(1) TCGA-05-4410-01 9 2110342 2110342 A T SMARCA2 Missense_Mutation p.R1127S 0.25 possibly_damaging(0.537) TCGA-05-4410-01 9 21186874 21186874 A T IFNA4 3'UTR 0.08 TCGA-05-4410-01 9 21206650 21206650 T A IFNA10 Missense_Mutation p.R149S 0.07 tolerated(0.25) probably_damaging(0.917) TCGA-05-4410-01 9 21409265 21409265 C A IFNA8 Missense_Mutation p.H30Q 0.06 tolerated(0.05) probably_damaging(0.978) TCGA-05-4410-01 9 32634689 32634689 C A TAF1L Missense_Mutation p.V297L 0.28 tolerated(0.3) benign(0.001) TCGA-05-4410-01 9 33113437 33113437 C A B4GALT1 3'UTR 0.33 TCGA-05-4410-01 9 34249796 34249796 C G UBAP1 Nonsense_Mutation p.S432* 0.07 TCGA-05-4410-01 9 34521483 34521483 T C ENHO Missense_Mutation p.S71G 0.23 deleterious_low_confidence(0) benign(0.294) TCGA-05-4410-01 9 36117030 36117030 A T RECK Silent p.G703G 0.21 TCGA-05-4410-01 9 36882089 36882089 C A PAX5 Silent p.A308A 0.18 TCGA-05-4410-01 9 39118158 39118158 C T CNTNAP3 Missense_Mutation p.E727K 0.16 deleterious(0.03) benign(0.434) TCGA-05-4410-01 9 39171531 39171531 C A CNTNAP3 Missense_Mutation p.D390Y 0.19 deleterious(0) possibly_damaging(0.897) TCGA-05-4410-01 9 39178249 39178249 T G CNTNAP3 Missense_Mutation p.Q216P 0.06 deleterious(0) probably_damaging(0.953) TCGA-05-4410-01 9 40702747 40702747 C A SPATA31A3 Missense_Mutation p.S135Y 0.10 tolerated(1) probably_damaging(0.919) TCGA-05-4410-01 9 40704246 40704246 C A SPATA31A3 Missense_Mutation p.Q635K 0.09 deleterious(0.02) possibly_damaging(0.828) TCGA-05-4410-01 9 40705716 40705716 C A SPATA31A3 Missense_Mutation p.L1125I 0.10 tolerated(0.16) benign(0.058) TCGA-05-4410-01 9 40705718 40705718 T G SPATA31A3 Silent p.L1125L 0.10 TCGA-05-4410-01 9 40716166 40716166 G T FAM74A3 RNA 0.19 TCGA-05-4410-01 9 40774548 40774548 A G ZNF658 Missense_Mutation p.C243R 0.05 tolerated(0.1) possibly_damaging(0.466) TCGA-05-4410-01 9 74840612 74840612 G T GDA Missense_Mutation p.R245L 0.13 tolerated(0.33) benign(0.001) TCGA-05-4410-01 9 77411735 77411735 A T TRPM6 Silent p.V771V 0.16 TCGA-05-4410-01 9 77442833 77442833 G T TRPM6 Silent p.P234P 0.07 TCGA-05-4410-01 9 79117415 79117415 T A GCNT1 Missense_Mutation p.F40I 0.11 tolerated(0.08) benign(0.107) TCGA-05-4410-01 9 79325636 79325636 T G PRUNE2 Silent p.A518A 0.28 TCGA-05-4410-01 9 79931245 79931245 A T VPS13A Missense_Mutation p.M1596L 0.09 deleterious(0) benign(0.017) TCGA-05-4410-01 9 91994133 91994133 G C SEMA4D Missense_Mutation p.S692C 0.05 deleterious(0.05) benign(0.086) TCGA-05-4410-01 9 94493208 94493208 A C ROR2 Missense_Mutation p.C389W 0.18 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 9 95375392 95375392 A G CENPP Silent p.E276E 0.08 TCGA-05-4410-01 9 97325681 97325681 G T FBP2 Silent p.T256T 0.10 TCGA-05-4410-01 9 99006653 99006653 C T HSD17B3 Silent p.K210K 0.09 TCGA-05-4410-01 X 106890894 106890894 G T PRPS1 Missense_Mutation p.G255C 0.28 deleterious(0) probably_damaging(0.988) TCGA-05-4410-01 X 107814669 107814669 C G COL4A5 Silent p.P137P 0.27 TCGA-05-4410-01 X 111155894 111155894 G T TRPC5 Silent p.R175R 0.42 TCGA-05-4410-01 X 11316996 11316996 T A AMELX Missense_Mutation p.L172Q 0.75 tolerated(0.32) unknown(0) TCGA-05-4410-01 X 118544216 118544216 G T SLC25A43 Missense_Mutation p.G194V 0.48 tolerated(0.27) benign(0.142) TCGA-05-4410-01 X 129492640 129492640 G A SLC25A14 Silent p.L175L 0.41 TCGA-05-4410-01 X 130215686 130215686 C A ARHGAP36 Missense_Mutation p.P16H 0.41 deleterious_low_confidence(0) benign(0.371) TCGA-05-4410-01 X 133087218 133087218 G T GPC3 Missense_Mutation p.L66I 0.45 tolerated(0.88) benign(0.01) TCGA-05-4410-01 X 135487937 135487937 G T GPR112 Missense_Mutation p.C2914F 0.49 deleterious(0.02) benign(0.312) TCGA-05-4410-01 X 135741286 135741286 A C CD40LG Missense_Mutation p.Q166H 0.39 deleterious(0.05) benign(0.335) TCGA-05-4410-01 X 136113092 136113092 C G GPR101 Missense_Mutation p.E248Q 0.10 tolerated(0.6) benign(0.012) TCGA-05-4410-01 X 140995906 140995906 T A MAGEC1 Missense_Mutation p.Y906N 0.17 tolerated(0.06) unknown(0) TCGA-05-4410-01 X 142718172 142718172 C G SLITRK4 Missense_Mutation p.R251S 0.38 tolerated(0.06) probably_damaging(0.977) TCGA-05-4410-01 X 142803913 142803913 T A SPANXN2 5'UTR 0.50 TCGA-05-4410-01 X 149901077 149901077 G T MTMR1 Missense_Mutation p.G311C 0.38 deleterious(0) probably_damaging(1) TCGA-05-4410-01 X 150912786 150912786 T A CNGA2 Missense_Mutation p.L604Q 0.31 deleterious(0) probably_damaging(0.94) TCGA-05-4410-01 X 151820193 151820193 G A GABRQ Missense_Mutation p.R369Q 0.15 tolerated(0.28) benign(0.159) TCGA-05-4410-01 X 151935453 151935453 G T MAGEA3 Silent p.I238I 0.40 TCGA-05-4410-01 X 153137770 153137770 C A L1CAM Missense_Mutation p.K79N 0.39 tolerated(0.51) benign(0.001) TCGA-05-4410-01 X 153688868 153688868 C T PLXNA3 Silent p.I115I 0.28 TCGA-05-4410-01 X 21674113 21674113 G A KLHL34 Silent p.D598D 0.28 TCGA-05-4410-01 X 23020012 23020012 G T DDX53 Missense_Mutation p.R613I 0.32 tolerated(0.2) benign(0.001) TCGA-05-4410-01 X 30327199 30327199 C G NR0B1 Silent p.P94P 0.08 TCGA-05-4410-01 X 30726207 30726207 G A GK Missense_Mutation p.A305T 0.15 deleterious(0) probably_damaging(0.961) TCGA-05-4410-01 X 3235987 3235987 G T MXRA5 Missense_Mutation p.T1912N 0.43 deleterious(0) probably_damaging(0.999) TCGA-05-4410-01 X 37028486 37028486 C A FAM47C Missense_Mutation p.P668Q 0.41 tolerated(0.1) benign(0.43) TCGA-05-4410-01 X 41201812 41201812 G - DDX3X Frame_Shift_Del p.G117Afs*104 0.24 TCGA-05-4410-01 X 52677375 52677375 G A SSX7 Silent p.N134N 0.36 TCGA-05-4410-01 X 54956381 54956381 C A TRO Missense_Mutation p.T1075N 0.35 deleterious(0) benign(0.168) TCGA-05-4410-01 X 55651049 55651049 C A FOXR2 Missense_Mutation p.P302Q 0.32 deleterious(0) probably_damaging(1) TCGA-05-4410-01 X 67937280 67937280 C A STARD8 Missense_Mutation p.P175Q 0.38 tolerated(0.26) benign(0.442) TCGA-05-4410-01 X 72674320 72674320 T - CDX4 Frame_Shift_Del p.S252Pfs*30 0.56 TCGA-05-4410-01 X 73064219 73064219 G T XIST RNA 0.42 TCGA-05-4410-01 X 73812542 73812542 G A RLIM Missense_Mutation p.P203L 0.36 deleterious(0) unknown(0) TCGA-05-4410-01 X 78216452 78216452 G C P2RY10 Missense_Mutation p.K145N 0.25 deleterious(0.01) probably_damaging(0.954) TCGA-05-4410-01 X 86773015 86773015 G T KLHL4 Missense_Mutation p.G40V 0.30 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-05-4410-01 X 88008656 88008656 C T CPXCR1 Nonsense_Mutation p.R81* 0.27 TCGA-05-4410-01 X 91131875 91131875 G T PCDH11X Missense_Mutation p.K212N 0.49 deleterious(0) probably_damaging(0.978) TCGA-05-4410-01 X 96328001 96328001 A C DIAPH2 Missense_Mutation p.K704N 0.15 deleterious(0.01) probably_damaging(0.979) TCGA-05-4415-01 10 117185778 117185778 C T ATRNL1 Silent p.R1096R 0.39 TCGA-05-4415-01 10 124336238 124336238 G A DMBT1 Missense_Mutation p.A203T 0.37 tolerated(0.08) benign(0.1) TCGA-05-4415-01 10 24832238 24832238 C G KIAA1217 Missense_Mutation p.Q1347E 0.37 tolerated(0.14) probably_damaging(0.985) TCGA-05-4415-01 10 55755478 55755478 C A PCDH15 Silent p.G933G 0.46 TCGA-05-4415-01 10 78771774 78771774 A G KCNMA1 Silent p.H681H 0.34 TCGA-05-4415-01 10 85961609 85961609 G C CDHR1 Missense_Mutation p.R191P 0.31 deleterious(0) probably_damaging(0.947) TCGA-05-4415-01 11 103091378 103091378 A T DYNC2H1 Silent p.A2991A 0.40 TCGA-05-4415-01 11 104879698 104879698 C T CASP5 Missense_Mutation p.G19D 0.27 tolerated_low_confidence(0.19) benign(0) TCGA-05-4415-01 11 121986432 121986432 G T BLID Missense_Mutation p.L67I 0.55 tolerated_low_confidence(0.09) possibly_damaging(0.801) TCGA-05-4415-01 11 13514029 13514029 C A PTH Missense_Mutation p.V91F 0.21 tolerated(0.5) possibly_damaging(0.794) TCGA-05-4415-01 11 18195827 18195827 C T MRGPRX4 3'UTR 0.19 TCGA-05-4415-01 11 36669581 36669581 C G C11orf74 Missense_Mutation p.P125R 0.26 deleterious(0) probably_damaging(1) TCGA-05-4415-01 11 36669586 36669586 G A C11orf74 Missense_Mutation p.E127K 0.27 deleterious(0.02) probably_damaging(0.939) TCGA-05-4415-01 11 46388906 46388906 G T DGKZ Missense_Mutation p.C265F 0.33 tolerated(0.08) benign(0.096) TCGA-05-4415-01 11 4703755 4703755 A C OR51E2 Missense_Mutation p.C63G 0.30 deleterious(0.04) benign(0.048) TCGA-05-4415-01 11 4936863 4936863 T A OR51G2 Missense_Mutation p.S11C 0.27 deleterious(0.03) unknown(0) TCGA-05-4415-01 11 55595361 55595361 A G OR5L2 Missense_Mutation p.T223A 0.36 tolerated(0.15) benign(0.123) TCGA-05-4415-01 11 55653690 55653690 G T TRIM51 Missense_Mutation p.W168L 0.43 tolerated(0.09) benign(0.157) TCGA-05-4415-01 11 55681357 55681357 C A OR5W2 Missense_Mutation p.R234S 0.39 deleterious(0.02) possibly_damaging(0.517) TCGA-05-4415-01 11 5968810 5968810 C A OR56A3 Nonsense_Mutation p.C78* 0.37 TCGA-05-4415-01 11 62384573 62384573 G T B3GAT3 Silent p.L168L 0.39 TCGA-05-4415-01 11 64806226 64806226 G A SNX15 Missense_Mutation p.E283K 0.50 deleterious(0) probably_damaging(1) TCGA-05-4415-01 11 68514791 68514791 G T MTL5 Missense_Mutation p.P172Q 0.06 tolerated(0.92) benign(0.008) TCGA-05-4415-01 11 71847143 71847143 C A FOLR3 Missense_Mutation p.P49T 0.35 deleterious(0) benign(0.066) TCGA-05-4415-01 11 73950231 73950231 T A PPME1 Missense_Mutation p.I255K 0.33 tolerated(0.09) benign(0.228) TCGA-05-4415-01 11 94861876 94861876 A T ENDOD1 Missense_Mutation p.K212N 0.39 deleterious(0) possibly_damaging(0.688) TCGA-05-4415-01 12 100957284 100957284 G - NR1H4 3'Flank 0.43 TCGA-05-4415-01 12 104030904 104030904 C T STAB2 Missense_Mutation p.A200V 0.77 tolerated(0.07) benign(0.438) TCGA-05-4415-01 12 106477704 106477704 C A NUAK1 Missense_Mutation p.G173C 0.81 deleterious(0) probably_damaging(0.995) TCGA-05-4415-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.58 deleterious(0.04) probably_damaging(0.993) TCGA-05-4415-01 12 2721098 2721098 C A CACNA1C Silent p.I1269I 0.48 TCGA-05-4415-01 12 29908673 29908673 G T TMTC1 Missense_Mutation p.L234I 0.77 tolerated(0.1) benign(0.41) TCGA-05-4415-01 12 52756686 52756686 G A KRT85 Silent p.N343N 0.72 TCGA-05-4415-01 12 58174037 58174037 G - METTL21B Splice_Site p.X99_splice 0.49 TCGA-05-4415-01 12 6085306 6085306 G A VWF Nonsense_Mutation p.Q2470* 0.17 TCGA-05-4415-01 12 6085325 6085325 G A VWF Silent p.L2463L 0.17 TCGA-05-4415-01 12 66765685 66765685 G T GRIP1 Missense_Mutation p.T882K 0.74 tolerated(0.07) benign(0.109) TCGA-05-4415-01 12 78574707 78574707 C A NAV3 Missense_Mutation p.N1836K 0.84 tolerated(0.08) benign(0.381) TCGA-05-4415-01 12 7984358 7984358 G T SLC2A14 Silent p.I61I 0.21 TCGA-05-4415-01 12 80660260 80660260 C T OTOGL Missense_Mutation p.H743Y 0.83 tolerated(0.14) probably_damaging(0.944) TCGA-05-4415-01 13 37678663 37678663 G T CSNK1A1L Missense_Mutation p.P244H 0.60 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-05-4415-01 13 43930154 43930154 G T ENOX1 Silent p.R242R 0.70 TCGA-05-4415-01 13 49039189 49039189 A G RB1 Missense_Mutation p.Y756C 0.30 deleterious(0) probably_damaging(1) TCGA-05-4415-01 13 58207946 58207946 C A PCDH17 Nonsense_Mutation p.Y422* 0.12 TCGA-05-4415-01 13 77631213 77631213 T C MYCBP2 Missense_Mutation p.I4411V 0.31 benign(0.001) TCGA-05-4415-01 14 106967177 106967177 C A IGHV1-46 Missense_Mutation p.G75C 0.39 deleterious(0) possibly_damaging(0.894) TCGA-05-4415-01 14 24045665 24045665 C T JPH4 Missense_Mutation p.G127D 0.30 deleterious(0) probably_damaging(0.972) TCGA-05-4415-01 14 24785218 24785218 C A LTB4R Missense_Mutation p.R121S 0.30 tolerated(0.15) benign(0.078) TCGA-05-4415-01 14 38724679 38724679 G A CLEC14A Silent p.R183R 0.44 TCGA-05-4415-01 14 39717248 39717248 T C MIA2 Silent p.N490N 0.39 TCGA-05-4415-01 14 55907125 55907125 A T TBPL2 Missense_Mutation p.C47S 0.36 tolerated_low_confidence(0.18) benign(0.151) TCGA-05-4415-01 14 62547784 62547784 G T SYT16 Missense_Mutation p.G409V 0.49 deleterious(0) probably_damaging(0.966) TCGA-05-4415-01 14 70990220 70990220 C A ADAM20 Nonsense_Mutation p.E469* 0.33 TCGA-05-4415-01 14 74824273 74824273 C A VRTN Missense_Mutation p.P263T 0.40 deleterious(0.02) benign(0.004) TCGA-05-4415-01 14 90870237 90870237 G T CALM1 Missense_Mutation p.L70F 0.31 deleterious_low_confidence(0.01) probably_damaging(0.975) TCGA-05-4415-01 14 95030231 95030231 C G SERPINA4 Missense_Mutation p.R138G 0.35 tolerated(0.3) benign(0.365) TCGA-05-4415-01 15 20657645 20657645 C A HERC2P3 RNA 0.21 TCGA-05-4415-01 15 21071314 21071314 A T POTEB2 Silent p.R99R 0.11 TCGA-05-4415-01 15 33091096 33091096 T A FMN1 Missense_Mutation p.T1124S 0.34 tolerated(0.4) possibly_damaging(0.554) TCGA-05-4415-01 15 40594168 40594168 G A PLCB2 Missense_Mutation p.P191L 0.37 deleterious(0.03) possibly_damaging(0.493) TCGA-05-4415-01 15 54305977 54305977 A T UNC13C Missense_Mutation p.T293S 0.32 tolerated_low_confidence(0.52) benign(0.11) TCGA-05-4415-01 15 83926424 83926424 G T BNC1 Missense_Mutation p.L919I 0.30 tolerated(0.21) benign(0.242) TCGA-05-4415-01 16 17211799 17211799 C T XYLT1 Missense_Mutation p.R754H 0.43 deleterious(0) probably_damaging(1) TCGA-05-4415-01 16 18812850 18812850 A T ARL6IP1 5'UTR 0.18 TCGA-05-4415-01 16 24942256 24942256 C T ARHGAP17 Silent p.Q788Q 0.20 TCGA-05-4415-01 16 29998953 29998953 G A TAOK2 Silent p.K1120K 0.22 TCGA-05-4415-01 16 31284711 31284711 G A ITGAM Missense_Mutation p.G244R 0.43 deleterious(0.01) probably_damaging(1) TCGA-05-4415-01 16 31388320 31388320 G T ITGAX Splice_Site p.X876_splice 0.16 TCGA-05-4415-01 16 48210987 48210987 G A ABCC11 Missense_Mutation p.T1129I 0.59 tolerated(0.11) benign(0.01) TCGA-05-4415-01 16 51174869 51174869 A G SALL1 Silent p.L422L 0.50 TCGA-05-4415-01 16 66942271 66942271 C - CDH16 3'UTR 0.42 TCGA-05-4415-01 16 67698948 67698948 C T ENKD1 Missense_Mutation p.R135H 0.24 tolerated(0.11) benign(0.003) TCGA-05-4415-01 16 72141383 72141383 C T DHX38 Silent p.P915P 0.44 TCGA-05-4415-01 16 75563159 75563159 A G CHST5 Missense_Mutation p.L375P 0.52 deleterious(0) probably_damaging(0.981) TCGA-05-4415-01 16 81228608 81228608 C A PKD1L2 Silent p.L50L 0.19 TCGA-05-4415-01 16 81253859 81253859 G A PKD1L2 Silent p.C39C 0.54 TCGA-05-4415-01 16 84199428 84199428 T A DNAAF1 Silent p.A301A 0.44 TCGA-05-4415-01 16 86545096 86545096 C T FOXF1 Silent p.H307H 0.40 TCGA-05-4415-01 16 89592826 89592826 G T SPG7 Missense_Mutation p.E236D 0.44 tolerated(1) benign(0.006) TCGA-05-4415-01 17 10258398 10258398 C T MYH13 Intron 0.22 TCGA-05-4415-01 17 10363568 10363568 T A MYH4 Missense_Mutation p.R406S 0.54 deleterious(0.01) probably_damaging(0.999) TCGA-05-4415-01 17 38560655 38560655 T A TOP2A Missense_Mutation p.E712V 0.34 tolerated(0.2) benign(0.348) TCGA-05-4415-01 17 38859882 38859882 C A KRT24 Missense_Mutation p.A22S 0.47 tolerated_low_confidence(0.43) unknown(0) TCGA-05-4415-01 17 39778674 39778674 G T KRT17 Missense_Mutation p.A202D 0.33 deleterious(0) possibly_damaging(0.836) TCGA-05-4415-01 17 4713204 4713204 A G PLD2 Missense_Mutation p.Y247C 0.63 deleterious(0) probably_damaging(0.999) TCGA-05-4415-01 17 47284772 47284772 G T GNGT2 Missense_Mutation p.L5I 0.39 tolerated(0.05) possibly_damaging(0.762) TCGA-05-4415-01 17 48552029 48552029 G A ACSF2 3'UTR 0.29 TCGA-05-4415-01 17 56277675 56277675 C A EPX Silent p.R543R 0.39 TCGA-05-4415-01 17 59560748 59560748 G A TBX4 Silent p.R503R 0.40 TCGA-05-4415-01 17 59937249 59937249 C A BRIP1 Missense_Mutation p.S38I 0.36 tolerated(0.06) possibly_damaging(0.465) TCGA-05-4415-01 17 61767648 61767648 G T MAP3K3 Missense_Mutation p.R394L 0.36 deleterious(0) possibly_damaging(0.889) TCGA-05-4415-01 17 74392671 74392671 C A UBE2O Missense_Mutation p.A783S 0.38 tolerated(0.73) benign(0.057) TCGA-05-4415-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.64 TCGA-05-4415-01 17 78681705 78681705 G T RPTOR Missense_Mutation p.R138L 0.42 deleterious(0) benign(0.011) TCGA-05-4415-01 17 8215575 8215576 - T ARHGEF15 Frame_Shift_Ins p.A74Cfs*9 0.38 TCGA-05-4415-01 18 18629083 18629083 C A ROCK1 Missense_Mutation p.M128I 0.41 deleterious(0) probably_damaging(0.999) TCGA-05-4415-01 18 23598156 23598156 C A SS18 3'UTR 0.45 TCGA-05-4415-01 18 28598198 28598198 C T DSC3 Missense_Mutation p.A368T 0.36 tolerated(0.98) benign(0.003) TCGA-05-4415-01 18 33048628 33048628 C A INO80C Missense_Mutation p.D212Y 0.33 deleterious(0) probably_damaging(0.947) TCGA-05-4415-01 18 67614136 67614136 C - CD226 Frame_Shift_Del p.K73Sfs*10 0.32 TCGA-05-4415-01 19 1220663 1220676 CCTGGACACCTTCT - STK11 Frame_Shift_Del p.L228Rfs*33 0.78 TCGA-05-4415-01 19 14736374 14736374 A T EMR3 Missense_Mutation p.V617E 0.60 tolerated(0.58) benign(0.099) TCGA-05-4415-01 19 18174812 18174812 C T IL12RB1 Missense_Mutation p.V498M 0.75 deleterious(0) probably_damaging(0.995) TCGA-05-4415-01 19 20235970 20235970 G T CTC-260E6.2 RNA 0.57 TCGA-05-4415-01 19 20235972 20235972 G T CTC-260E6.2 RNA 0.54 TCGA-05-4415-01 19 43579616 43579616 C A PSG2 Missense_Mutation p.R200M 0.41 deleterious(0.03) probably_damaging(0.999) TCGA-05-4415-01 19 44791609 44791609 C T ZNF235 Missense_Mutation p.C660Y 0.39 deleterious(0) probably_damaging(1) TCGA-05-4415-01 19 50434063 50434063 C A ATF5 5'UTR 0.46 TCGA-05-4415-01 19 50735303 50735303 G T MYH14 Nonsense_Mutation p.G364* 0.40 TCGA-05-4415-01 19 54850356 54850356 G T LILRA4 Silent p.L3L 0.28 TCGA-05-4415-01 19 57328066 57328066 G T PEG3 Missense_Mutation p.Q582K 0.26 deleterious(0.03) benign(0.005) TCGA-05-4415-01 1 145075718 145075718 G A PDE4DIP Missense_Mutation p.R49W 0.23 deleterious_low_confidence(0.01) probably_damaging(0.963) TCGA-05-4415-01 1 14925597 14925597 G A KAZN Missense_Mutation p.R35Q 0.05 tolerated(0.43) possibly_damaging(0.602) TCGA-05-4415-01 1 152187539 152187539 C A HRNR Missense_Mutation p.G2189V 0.04 unknown(0) TCGA-05-4415-01 1 152187540 152187540 C T HRNR Missense_Mutation p.G2189R 0.04 unknown(0) TCGA-05-4415-01 1 155449990 155449990 C T ASH1L Missense_Mutation p.G891S 0.63 deleterious_low_confidence(0) probably_damaging(1) TCGA-05-4415-01 1 158549146 158549146 C A OR10X1 Missense_Mutation p.D182Y 0.57 deleterious(0.03) benign(0.389) TCGA-05-4415-01 1 159283997 159283997 C A OR10J3 Silent p.G151G 0.60 TCGA-05-4415-01 1 160124868 160124868 A T ATP1A4 Missense_Mutation p.T81S 0.12 tolerated(0.48) benign(0.004) TCGA-05-4415-01 1 175092666 175092666 G T TNN Missense_Mutation p.R927S 0.69 tolerated(0.15) benign(0.232) TCGA-05-4415-01 1 176564316 176564316 C T PAPPA2 Missense_Mutation p.R526C 0.18 deleterious(0) probably_damaging(0.912) TCGA-05-4415-01 1 181620507 181620507 C A CACNA1E Missense_Mutation p.L329M 0.64 tolerated(0.19) possibly_damaging(0.887) TCGA-05-4415-01 1 186026523 186026523 G T HMCN1 Missense_Mutation p.R2434S 0.57 probably_damaging(0.993) TCGA-05-4415-01 1 190067405 190067405 C G BRINP3 Missense_Mutation p.D682H 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-05-4415-01 1 193051691 193051691 G C TROVE2 Splice_Site p.X440_splice 0.64 TCGA-05-4415-01 1 197396716 197396716 C A CRB1 Missense_Mutation p.A754D 0.16 deleterious(0.01) probably_damaging(0.943) TCGA-05-4415-01 1 19992913 19992913 G T HTR6 Missense_Mutation p.A223S 0.31 tolerated(0.33) possibly_damaging(0.781) TCGA-05-4415-01 1 214171394 214171394 G - PROX1 Frame_Shift_Del p.G506Efs*10 0.40 TCGA-05-4415-01 1 238048146 238048146 A T ZP4 Missense_Mutation p.V438E 0.11 deleterious(0) probably_damaging(0.995) TCGA-05-4415-01 1 247694784 247694784 C A OR2C3 3'UTR 0.17 TCGA-05-4415-01 1 247769300 247769300 C T OR2G3 Missense_Mutation p.P138L 0.60 deleterious(0.02) benign(0.008) TCGA-05-4415-01 1 248436974 248436974 T G OR2T33 Missense_Mutation p.H48P 0.59 deleterious(0.01) possibly_damaging(0.616) TCGA-05-4415-01 1 248436975 248436975 G A OR2T33 Missense_Mutation p.H48Y 0.59 tolerated(0.74) benign(0.013) TCGA-05-4415-01 1 5925161 5925161 C A NPHP4 Splice_Site p.X1272_splice 0.13 TCGA-05-4415-01 1 86590968 86590968 C A COL24A1 Missense_Mutation p.V351L 0.49 tolerated(0.85) benign(0.002) TCGA-05-4415-01 1 89658733 89658733 G T GBP4 Missense_Mutation p.P175H 0.23 tolerated(0.13) benign(0.021) TCGA-05-4415-01 20 17462466 17462466 C A PCSK2 Silent p.T556T 0.25 TCGA-05-4415-01 20 47273634 47273634 G T PREX1 Missense_Mutation p.N689K 0.47 tolerated(0.75) benign(0.046) TCGA-05-4415-01 20 47626850 47626850 G T ARFGEF2 Missense_Mutation p.W1222C 0.59 deleterious(0) probably_damaging(1) TCGA-05-4415-01 20 61468487 61468487 C T COL9A3 Silent p.S552S 0.07 TCGA-05-4415-01 21 30422410 30422410 T C USP16 Intron 0.34 TCGA-05-4415-01 22 22712446 22712446 C A IGLV1-47 Silent p.A63A 0.45 TCGA-05-4415-01 22 26688836 26688836 G T SEZ6L Missense_Mutation p.D187Y 0.44 deleterious(0.01) benign(0.11) TCGA-05-4415-01 22 31583195 31583195 T A RNF185 Missense_Mutation p.C39S 0.30 deleterious(0) probably_damaging(0.999) TCGA-05-4415-01 22 46508727 46508727 G T FLJ27365 3'UTR 0.17 TCGA-05-4415-01 2 11738806 11738806 G A GREB1 Missense_Mutation p.G718E 0.35 deleterious(0) possibly_damaging(0.69) TCGA-05-4415-01 2 128347777 128347777 C A MYO7B Silent p.I655I 0.42 TCGA-05-4415-01 2 128477085 128477085 C A WDR33 Silent p.G838G 0.43 TCGA-05-4415-01 2 131521635 131521635 G C AMER3 Missense_Mutation p.G664R 0.28 tolerated(0.37) benign(0.006) TCGA-05-4415-01 2 136107556 136107556 C T ZRANB3 Missense_Mutation p.E197K 0.42 deleterious(0) probably_damaging(1) TCGA-05-4415-01 2 137928486 137928486 G T THSD7B Missense_Mutation p.K567N 0.33 tolerated(0.53) possibly_damaging(0.607) TCGA-05-4415-01 2 145156362 145156362 T A ZEB2 Missense_Mutation p.S798C 0.36 tolerated(0.1) possibly_damaging(0.751) TCGA-05-4415-01 2 159992709 159992709 C G TANC1 Silent p.P88P 0.34 TCGA-05-4415-01 2 162224311 162224311 G A PSMD14 Missense_Mutation p.R46H 0.38 deleterious(0) probably_damaging(1) TCGA-05-4415-01 2 163693240 163693240 G T KCNH7 Missense_Mutation p.N38K 0.44 deleterious(0.02) probably_damaging(0.916) TCGA-05-4415-01 2 171867901 171867901 G T TLK1 Silent p.G466G 0.19 TCGA-05-4415-01 2 172666787 172666787 C A SLC25A12 Splice_Site p.X391_splice 0.41 TCGA-05-4415-01 2 176812337 176812337 C A KIAA1715 Missense_Mutation p.V193L 0.33 tolerated(0.43) benign(0.002) TCGA-05-4415-01 2 17697597 17697597 C A RAD51AP2 Missense_Mutation p.D696Y 0.35 deleterious(0) probably_damaging(0.995) TCGA-05-4415-01 2 179477551 179477551 C A TTN Nonsense_Mutation p.E16633* 0.27 TCGA-05-4415-01 2 179742647 179742647 G A CCDC141 Intron 0.39 TCGA-05-4415-01 2 201438669 201438669 A T SGOL2 Missense_Mutation p.K1200N 0.41 deleterious(0.03) benign(0.059) TCGA-05-4415-01 2 215820017 215820017 G T ABCA12 Missense_Mutation p.T2101N 0.34 deleterious(0.01) probably_damaging(0.955) TCGA-05-4415-01 2 27458430 27458430 G T CAD Silent p.V1332V 0.36 TCGA-05-4415-01 2 49216164 49216164 G T FSHR Missense_Mutation p.T159K 0.46 tolerated(0.34) benign(0.001) TCGA-05-4415-01 2 71654429 71654429 G C ZNF638 Missense_Mutation p.K1810N 0.30 deleterious(0.03) probably_damaging(0.962) TCGA-05-4415-01 2 74043317 74043317 T A C2orf78 Missense_Mutation p.L656Q 0.25 deleterious(0.02) possibly_damaging(0.887) TCGA-05-4415-01 2 74128468 74128468 G T ACTG2 Silent p.V10V 0.33 TCGA-05-4415-01 2 95514953 95514953 G T RNU6-1320P 5'Flank 0.27 TCGA-05-4415-01 3 108836920 108836920 A C MORC1 5'UTR 0.33 TCGA-05-4415-01 3 116163754 116163754 G A LSAMP Missense_Mutation p.T42I 0.19 deleterious(0.04) benign(0.213) TCGA-05-4415-01 3 13678060 13678060 C A FBLN2 Silent p.V1110V 0.62 TCGA-05-4415-01 3 14712602 14712603 - A CCDC174 Frame_Shift_Ins p.T436Nfs*23 0.45 TCGA-05-4415-01 3 155649570 155649570 A G GMPS Missense_Mutation p.Y526C 0.35 deleterious(0) probably_damaging(1) TCGA-05-4415-01 3 47043987 47043987 G T NBEAL2 Missense_Mutation p.A1760S 0.62 tolerated(0.19) benign(0.001) TCGA-05-4415-01 3 48610962 48610962 C A COL7A1 Missense_Mutation p.G2201V 0.62 probably_damaging(0.988) TCGA-05-4415-01 3 52255676 52255676 A C TLR9 Missense_Mutation p.W1040G 0.33 deleterious(0) probably_damaging(0.999) TCGA-05-4415-01 3 93619674 93619674 T C PROS1 Missense_Mutation p.Y234C 0.38 deleterious(0) probably_damaging(0.981) TCGA-05-4415-01 4 114117535 114117535 C A ANK2 Missense_Mutation p.N66K 0.28 probably_damaging(0.94) TCGA-05-4415-01 4 141074131 141074131 G A MAML3 Silent p.T117T 0.57 TCGA-05-4415-01 4 183713606 183713606 C T TENM3 Silent p.D1927D 0.41 TCGA-05-4415-01 4 46307719 46307719 G T GABRA2 Missense_Mutation p.T190K 0.51 deleterious(0) probably_damaging(0.948) TCGA-05-4415-01 4 68619639 68619639 G T GNRHR Missense_Mutation p.R139S 0.36 deleterious(0) probably_damaging(1) TCGA-05-4415-01 4 70596333 70596333 C T SULT1B1 Missense_Mutation p.D222N 0.47 tolerated(0.31) benign(0.01) TCGA-05-4415-01 4 76781857 76781857 G A PPEF2 Missense_Mutation p.A742V 0.38 tolerated_low_confidence(0.26) benign(0.002) TCGA-05-4415-01 4 85642649 85642649 T C WDFY3 Silent p.Q2506Q 0.31 TCGA-05-4415-01 4 99342456 99342456 G T RAP1GDS1 Missense_Mutation p.V452L 0.41 deleterious(0.01) probably_damaging(0.917) TCGA-05-4415-01 4 99342458 99342458 G T RAP1GDS1 Silent p.V452V 0.42 TCGA-05-4415-01 5 10973545 10973545 G C CTNND2 3'UTR 0.39 TCGA-05-4415-01 5 123982754 123982762 TACTTCTCA - ZNF608 In_Frame_Del p.E1106_Y1108del 0.34 TCGA-05-4415-01 5 128862046 128862046 C A ADAMTS19 Missense_Mutation p.P322H 0.10 tolerated(0.17) benign(0.007) TCGA-05-4415-01 5 140215250 140215250 C T PCDHA7 Missense_Mutation p.R428W 0.37 deleterious_low_confidence(0.04) benign(0.06) TCGA-05-4415-01 5 140516961 140516961 C T PCDHB5 Missense_Mutation p.P649S 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.795) TCGA-05-4415-01 5 140529963 140529963 C A PCDHB6 Missense_Mutation p.T42K 0.38 deleterious(0.01) benign(0.398) TCGA-05-4415-01 5 140710439 140710439 G T PCDHGA1 Missense_Mutation p.G63V 0.40 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-05-4415-01 5 140801564 140801564 G T PCDHGA11 Missense_Mutation p.S257I 0.32 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-05-4415-01 5 150657178 150657178 G A SLC36A3 Silent p.L438L 0.39 TCGA-05-4415-01 5 154395153 154395153 G T KIF4B Missense_Mutation p.L578F 0.28 deleterious(0) probably_damaging(0.994) TCGA-05-4415-01 5 154396937 154396937 G T KIF4B Missense_Mutation p.C1173F 0.26 tolerated(0.64) benign(0.001) TCGA-05-4415-01 5 172755182 172755182 C A STC2 Silent p.R5R 0.34 TCGA-05-4415-01 5 24537633 24537633 G T CDH10 Missense_Mutation p.R128S 0.32 tolerated(0.05) probably_damaging(0.984) TCGA-05-4415-01 5 31323074 31323074 A G CDH6 Missense_Mutation p.R678G 0.05 deleterious(0.01) probably_damaging(0.991) TCGA-05-4415-01 5 33614470 33614470 C A ADAMTS12 Missense_Mutation p.Q800H 0.36 deleterious(0) probably_damaging(0.988) TCGA-05-4415-01 5 45262155 45262155 C A HCN1 Silent p.S847S 0.32 TCGA-05-4415-01 5 45267293 45267293 G T HCN1 Missense_Mutation p.L561I 0.32 deleterious(0) probably_damaging(0.995) TCGA-05-4415-01 5 53751521 53751521 G T HSPB3 5'UTR 0.36 TCGA-05-4415-01 5 53751522 53751522 G T HSPB3 5'UTR 0.36 TCGA-05-4415-01 6 123318960 123318960 T A CLVS2 Missense_Mutation p.L13Q 0.25 tolerated(0.15) benign(0.099) TCGA-05-4415-01 6 135239695 135239695 C A ALDH8A1 Missense_Mutation p.G441V 0.33 deleterious(0) probably_damaging(0.999) TCGA-05-4415-01 6 24843714 24843714 G T FAM65B Missense_Mutation p.S432R 0.80 deleterious(0.03) probably_damaging(0.913) TCGA-05-4415-01 6 30297471 30297471 G C TRIM39 Missense_Mutation p.C126S 0.70 deleterious(0) probably_damaging(0.999) TCGA-05-4415-01 6 30545863 30545863 A G ABCF1 Missense_Mutation p.K76R 0.25 tolerated_low_confidence(0.34) possibly_damaging(0.874) TCGA-05-4415-01 6 35090040 35090040 C A TCP11 Missense_Mutation p.L157F 0.65 tolerated(0.13) benign(0.4) TCGA-05-4415-01 6 36976674 36976674 C A FGD2 Missense_Mutation p.P45T 0.62 tolerated_low_confidence(0.1) benign(0.075) TCGA-05-4415-01 6 37605236 37605236 C A MDGA1 Splice_Site p.X926_splice 0.67 TCGA-05-4415-01 6 46658781 46658781 A T TDRD6 Silent p.L972L 0.69 TCGA-05-4415-01 6 4716036 4716036 G T CDYL Missense_Mutation p.R8S 0.70 tolerated_low_confidence(0.51) benign(0) TCGA-05-4415-01 6 52143587 52143587 C T MCM3 Missense_Mutation p.A323T 0.68 tolerated(0.26) benign(0.027) TCGA-05-4415-01 6 57183296 57183296 G T PRIM2 Missense_Mutation p.R18M 0.38 deleterious(0.03) possibly_damaging(0.601) TCGA-05-4415-01 6 79697925 79697925 C T PHIP Splice_Site p.X820_splice 0.14 TCGA-05-4415-01 6 88138502 88138502 G A C6ORF165 Silent p.A373A 0.44 TCGA-05-4415-01 7 100205337 100205337 T C PCOLCE Missense_Mutation p.Y364H 0.21 deleterious(0.01) probably_damaging(1) TCGA-05-4415-01 7 127334986 127334986 G T SND1 Missense_Mutation p.M111I 0.20 tolerated(0.4) benign(0.002) TCGA-05-4415-01 7 135418891 135418891 G T FAM180A Silent p.L118L 0.50 TCGA-05-4415-01 7 140301269 140301269 G C DENND2A Missense_Mutation p.S310C 0.40 tolerated(0.09) benign(0.062) TCGA-05-4415-01 7 141952343 141952343 C T PRSS58 Silent p.T175T 0.20 TCGA-05-4415-01 7 149174757 149174757 C A ZNF746 Missense_Mutation p.V204L 0.35 tolerated(0.11) probably_damaging(0.959) TCGA-05-4415-01 7 149461930 149461930 C A ZNF467 Missense_Mutation p.R554L 0.52 deleterious(0.01) probably_damaging(0.999) TCGA-05-4415-01 7 23163444 23163444 G T KLHL7 Missense_Mutation p.A57S 0.27 deleterious(0.01) probably_damaging(0.983) TCGA-05-4415-01 7 23387344 23387344 G T IGF2BP3 Silent p.V231V 0.18 TCGA-05-4415-01 7 33573735 33573735 G T BBS9 Missense_Mutation p.G823V 0.38 deleterious(0) probably_damaging(0.991) TCGA-05-4415-01 7 35144371 35144371 G T DPY19L2P1 RNA 0.25 TCGA-05-4415-01 7 36194118 36194118 G T EEPD1 Missense_Mutation p.R62L 0.77 deleterious(0.04) benign(0.396) TCGA-05-4415-01 7 47906168 47906168 C T PKD1L1 Missense_Mutation p.G1314E 0.24 tolerated(0.08) probably_damaging(0.999) TCGA-05-4415-01 7 48411995 48411995 G T ABCA13 Silent p.A3678A 0.23 TCGA-05-4415-01 7 5256250 5256250 G A WIPI2 Silent p.K146K 0.25 TCGA-05-4415-01 7 72419892 72419892 C T POM121 3'UTR 0.31 TCGA-05-4415-01 7 7622753 7622753 G C MIOS Missense_Mutation p.M466I 0.18 tolerated(0.19) benign(0.018) TCGA-05-4415-01 7 82387975 82387975 G T PCLO Silent p.A5115A 0.51 TCGA-05-4415-01 7 88966128 88966128 C A ZNF804B Missense_Mutation p.P1278T 0.24 deleterious(0.02) benign(0.209) TCGA-05-4415-01 8 10470400 10470400 G T RP1L1 Missense_Mutation p.P403H 0.35 probably_damaging(0.988) TCGA-05-4415-01 8 104898392 104898392 C A RIMS2 Missense_Mutation p.T522K 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-05-4415-01 8 105503016 105503016 C A LRP12 Missense_Mutation p.R822L 0.19 deleterious_low_confidence(0) benign(0.209) TCGA-05-4415-01 8 110516570 110516570 G T PKHD1L1 Nonsense_Mutation p.G3615* 0.08 TCGA-05-4415-01 8 11177238 11177238 C T MTMR9 Silent p.S459S 0.38 TCGA-05-4415-01 8 125025722 125025722 C A FER1L6 Missense_Mutation p.P625T 0.35 tolerated(0.11) benign(0.017) TCGA-05-4415-01 8 125025723 125025723 C A FER1L6 Missense_Mutation p.P625H 0.36 deleterious(0) possibly_damaging(0.572) TCGA-05-4415-01 8 144947001 144947001 C T EPPK1 Missense_Mutation p.V141I 0.21 benign(0.004) TCGA-05-4415-01 8 22872259 22872259 G - RHOBTB2 Frame_Shift_Del p.D633Tfs*40 0.22 TCGA-05-4415-01 8 40532360 40532360 C A ZMAT4 Missense_Mutation p.C147F 0.35 deleterious(0) probably_damaging(0.999) TCGA-05-4415-01 8 6782269 6782269 A G DEFA6 3'UTR 0.43 TCGA-05-4415-01 8 75898471 75898471 G A CRISPLD1 Missense_Mutation p.M83I 0.52 deleterious(0) probably_damaging(0.976) TCGA-05-4415-01 9 111663784 111663784 T A IKBKAP Silent p.A645A 0.29 TCGA-05-4415-01 9 131347078 131347078 G A SPTAN1 Missense_Mutation p.R839H 0.41 tolerated(0.12) possibly_damaging(0.535) TCGA-05-4415-01 9 131745599 131745599 G A NUP188 Silent p.V608V 0.27 TCGA-05-4415-01 9 8636710 8636710 G C PTPRD Missense_Mutation p.Q67E 0.25 deleterious(0) possibly_damaging(0.757) TCGA-05-4415-01 9 99799533 99799533 C A CTSV Splice_Site p.X132_splice 0.36 TCGA-05-4415-01 X 110496280 110496280 G T CAPN6 Silent p.S154S 0.74 TCGA-05-4415-01 X 129837188 129837188 C A ENOX2 Missense_Mutation p.M30I 0.82 tolerated_low_confidence(0.24) benign(0.003) TCGA-05-4415-01 X 18278317 18278317 C A SCML2 Missense_Mutation p.G348V 0.65 tolerated(0.29) benign(0.206) TCGA-05-4417-01 10 104816716 104816716 C - CNNM2 Frame_Shift_Del p.L690Cfs*14 0.28 TCGA-05-4417-01 10 106039228 106039228 A T GSTO2 Missense_Mutation p.E156V 0.10 deleterious(0) possibly_damaging(0.833) TCGA-05-4417-01 10 111987959 111987959 G T MXI1 Missense_Mutation p.G96V 0.25 deleterious(0) probably_damaging(0.995) TCGA-05-4417-01 10 121184541 121184541 C T GRK5 Silent p.H159H 0.10 TCGA-05-4417-01 10 121199253 121199253 C T GRK5 Missense_Mutation p.P314S 0.12 deleterious(0) possibly_damaging(0.744) TCGA-05-4417-01 10 133058582 133058582 G T TCERG1L Missense_Mutation p.P266T 0.17 tolerated(0.08) probably_damaging(0.972) TCGA-05-4417-01 10 30604933 30604934 - A MTPAP Frame_Shift_Ins p.G449Wfs*7 0.31 TCGA-05-4417-01 10 38403681 38403681 A G ZNF37A Splice_Site p.X6_splice 0.17 TCGA-05-4417-01 10 48429290 48429290 C A GDF10 Missense_Mutation p.G199V 0.15 deleterious(0.01) probably_damaging(0.965) TCGA-05-4417-01 10 49447647 49447647 C A FRMPD2 Splice_Site p.X263_splice 0.32 TCGA-05-4417-01 10 51847032 51847032 A G FAM21A Intron 0.16 TCGA-05-4417-01 10 52103484 52103484 C A SGMS1 Nonsense_Mutation p.E131* 0.30 TCGA-05-4417-01 10 52595888 52595888 C A A1CF Missense_Mutation p.V192L 0.09 tolerated(0.2) probably_damaging(0.993) TCGA-05-4417-01 10 69909840 69909840 C G MYPN Missense_Mutation p.P430R 0.28 deleterious(0) probably_damaging(0.999) TCGA-05-4417-01 10 73579616 73579616 C A PSAP Silent p.L349L 0.30 TCGA-05-4417-01 10 7820806 7820806 C T KIN Missense_Mutation p.E185K 0.27 tolerated(0.18) benign(0.008) TCGA-05-4417-01 10 93786944 93786944 A T BTAF1 Missense_Mutation p.M1765L 0.18 deleterious(0) possibly_damaging(0.728) TCGA-05-4417-01 11 108218090 108218090 T G ATM Missense_Mutation p.L2890R 0.43 deleterious(0) probably_damaging(1) TCGA-05-4417-01 11 110454436 110454436 T G ARHGAP20 Missense_Mutation p.N481H 0.52 deleterious(0.02) probably_damaging(0.999) TCGA-05-4417-01 11 1272644 1272644 C A MUC5B Missense_Mutation p.T4845N 0.29 unknown(0) TCGA-05-4417-01 11 1272646 1272646 T C MUC5B Missense_Mutation p.W4846R 0.28 unknown(0) TCGA-05-4417-01 11 133801993 133801993 C G IGSF9B Missense_Mutation p.K361N 0.50 deleterious(0) probably_damaging(0.987) TCGA-05-4417-01 11 20948922 20948922 T C NELL1 Silent p.S276S 0.17 TCGA-05-4417-01 11 24759796 24759796 T C LUZP2 Missense_Mutation p.L94P 0.31 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-05-4417-01 11 40137252 40137252 G C LRRC4C Silent p.S197S 0.12 TCGA-05-4417-01 11 43436154 43436154 G A TTC17 Silent p.L693L 0.14 TCGA-05-4417-01 11 47464332 47464332 G A RAPSN Missense_Mutation p.A189V 0.24 deleterious(0) probably_damaging(0.969) TCGA-05-4417-01 11 50003113 50003113 C A OR4C12 Missense_Mutation p.D309Y 0.26 deleterious_low_confidence(0) benign(0.34) TCGA-05-4417-01 11 51515616 51515616 T A OR4C46 Missense_Mutation p.L112Q 0.25 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-05-4417-01 11 5248282 5248282 G T HBB 5'UTR 0.22 TCGA-05-4417-01 11 55406518 55406518 G A OR4P4 Missense_Mutation p.E229K 0.65 tolerated(0.08) benign(0.098) TCGA-05-4417-01 11 55904484 55904484 G T OR8J3 Silent p.A237A 0.25 TCGA-05-4417-01 11 55904892 55904892 C A OR8J3 Silent p.L101L 0.35 TCGA-05-4417-01 11 56237227 56237227 G T OR5M3 Missense_Mutation p.F249L 0.26 deleterious(0.01) possibly_damaging(0.866) TCGA-05-4417-01 11 61913164 61913164 G T INCENP Nonsense_Mutation p.E634* 0.33 TCGA-05-4417-01 11 64026145 64026145 C G PLCB3 Missense_Mutation p.P405A 0.22 deleterious(0.02) probably_damaging(0.996) TCGA-05-4417-01 11 65268388 65268388 T C MALAT1 RNA 0.25 TCGA-05-4417-01 11 65268419 65268419 C T MALAT1 RNA 0.08 TCGA-05-4417-01 11 65620114 65620114 G A SNX32 Missense_Mutation p.R309Q 0.25 deleterious(0.02) possibly_damaging(0.806) TCGA-05-4417-01 11 66258798 66258798 C A DPP3 Silent p.R248R 0.24 TCGA-05-4417-01 11 6637657 6637657 T C TPP1 Missense_Mutation p.T322A 0.28 deleterious(0.01) possibly_damaging(0.467) TCGA-05-4417-01 11 6662431 6662431 G T DCHS1 Missense_Mutation p.D138E 0.32 deleterious(0) probably_damaging(0.999) TCGA-05-4417-01 11 76750717 76750717 G T B3GNT6 Missense_Mutation p.R41M 0.62 tolerated(0.23) possibly_damaging(0.507) TCGA-05-4417-01 12 104379502 104379502 G A TDG Silent p.G362G 0.23 TCGA-05-4417-01 12 113313513 113313513 G A RPH3A Missense_Mutation p.G305R 0.28 tolerated(0.16) benign(0.265) TCGA-05-4417-01 12 114374917 114374917 C A RBM19 Nonsense_Mutation p.E655* 0.16 TCGA-05-4417-01 12 124826522 124826522 G A NCOR2 Silent p.L1679L 0.26 TCGA-05-4417-01 12 21358830 21358830 G T SLCO1B1 Missense_Mutation p.V454L 0.09 tolerated(0.11) benign(0.012) TCGA-05-4417-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.48 deleterious(0.04) probably_damaging(0.993) TCGA-05-4417-01 12 49177055 49177055 G C ADCY6 Missense_Mutation p.P55A 0.15 tolerated(0.5) benign(0.002) TCGA-05-4417-01 12 50835427 50835427 G T LARP4 Splice_Site p.X268_splice 0.16 TCGA-05-4417-01 12 54110043 54110043 C T CALCOCO1 Splice_Site p.X335_splice 0.28 TCGA-05-4417-01 12 55524042 55524042 C G OR9K2 Missense_Mutation p.R164G 0.29 tolerated(0.08) benign(0.025) TCGA-05-4417-01 12 73012670 73012670 G T TRHDE Splice_Site p.X729_splice 0.23 TCGA-05-4417-01 12 73057028 73057028 G T TRHDE 3'UTR 0.29 TCGA-05-4417-01 12 80647288 80647288 G T OTOGL Missense_Mutation p.C434F 0.30 deleterious(0) probably_damaging(0.999) TCGA-05-4417-01 12 85531673 85531673 C A LRRIQ1 Missense_Mutation p.L1419I 0.29 deleterious(0.04) benign(0.388) TCGA-05-4417-01 13 100622784 100622784 C A ZIC5 Silent p.G382G 0.19 TCGA-05-4417-01 13 25399823 25399823 G C RNF17 Missense_Mutation p.E720Q 0.15 tolerated(0.18) probably_damaging(0.982) TCGA-05-4417-01 13 28519480 28519480 G C ATP5EP2 Missense_Mutation p.K28N 0.30 deleterious(0) probably_damaging(0.939) TCGA-05-4417-01 13 33635564 33635565 - T KL Frame_Shift_Ins p.L785Sfs*7 0.27 TCGA-05-4417-01 13 38164532 38164532 C G POSTN Missense_Mutation p.E140Q 0.25 deleterious(0.03) possibly_damaging(0.819) TCGA-05-4417-01 13 38357466 38357466 G T TRPC4 Missense_Mutation p.A2D 0.19 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-05-4417-01 13 44443475 44443475 G A CCDC122 Missense_Mutation p.P13L 0.08 tolerated_low_confidence(0.13) benign(0.016) TCGA-05-4417-01 13 70293636 70293636 C G KLHL1 Missense_Mutation p.W627S 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-05-4417-01 13 84453902 84453902 G T SLITRK1 Missense_Mutation p.L581M 0.33 tolerated(0.07) benign(0.185) TCGA-05-4417-01 13 88330080 88330080 C A SLITRK5 Missense_Mutation p.L813M 0.32 tolerated(0.18) benign(0.047) TCGA-05-4417-01 13 99337125 99337125 A G SLC15A1 Silent p.C660C 0.12 TCGA-05-4417-01 14 101348403 101348403 C A RTL1 Missense_Mutation p.R908L 0.36 deleterious(0) probably_damaging(0.998) TCGA-05-4417-01 14 20295950 20295950 C T OR4N2 Missense_Mutation p.L115F 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-05-4417-01 14 22293994 22293994 T A TRAV10 Missense_Mutation p.I33N 0.18 tolerated(0.5) benign(0.015) TCGA-05-4417-01 14 24619313 24619313 C T RNF31 Silent p.L285L 0.19 TCGA-05-4417-01 14 25044579 25044579 C A CTSG Missense_Mutation p.R32L 0.23 deleterious(0.01) benign(0.054) TCGA-05-4417-01 14 31626111 31626111 T C HECTD1 Missense_Mutation p.K623E 0.11 deleterious(0) possibly_damaging(0.886) TCGA-05-4417-01 14 73029202 73029202 G T RGS6 3'Flank 0.33 TCGA-05-4417-01 14 78399674 78399674 G T ADCK1 Silent p.G504G 0.31 TCGA-05-4417-01 14 80164043 80164043 C A NRXN3 Missense_Mutation p.F856L 0.25 deleterious(0.05) benign(0.177) TCGA-05-4417-01 14 91356896 91356896 G A RPS6KA5 Missense_Mutation p.P591S 0.14 deleterious(0) probably_damaging(1) TCGA-05-4417-01 15 24921606 24921606 G T NPAP1 Missense_Mutation p.V198L 0.25 tolerated(1) benign(0.001) TCGA-05-4417-01 15 64496651 64496654 CAAC AAT CSNK1G1 Frame_Shift_Del p.V329Ifs*9 0.17 TCGA-05-4417-01 15 65499179 65499179 C G CILP Missense_Mutation p.R122T 0.34 deleterious(0.03) benign(0.312) TCGA-05-4417-01 15 74032550 74032550 A G C15orf59 Missense_Mutation p.L197P 0.25 deleterious(0) probably_damaging(0.939) TCGA-05-4417-01 15 86813215 86813215 T C AGBL1 Missense_Mutation p.F589S 0.50 deleterious(0) probably_damaging(0.999) TCGA-05-4417-01 15 97326791 97326791 C A SPATA8 5'UTR 0.26 TCGA-05-4417-01 16 20410442 20410442 G T PDILT Missense_Mutation p.R61S 0.27 tolerated(0.07) probably_damaging(0.99) TCGA-05-4417-01 16 20748497 20748497 T G THUMPD1 Missense_Mutation p.Y256S 0.14 deleterious(0) probably_damaging(0.99) TCGA-05-4417-01 16 2296886 2296886 T A ECI1 Missense_Mutation p.S90C 0.08 tolerated(0.1) possibly_damaging(0.829) TCGA-05-4417-01 16 239997 239997 C A LUC7L Missense_Mutation p.R315L 0.18 deleterious_low_confidence(0.01) unknown(0) TCGA-05-4417-01 16 26147079 26147079 C A HS3ST4 Missense_Mutation p.A294D 0.19 deleterious(0) probably_damaging(1) TCGA-05-4417-01 16 3107056 3107056 T G MMP25 Missense_Mutation p.F228L 0.15 deleterious(0.04) benign(0.372) TCGA-05-4417-01 16 31539817 31539817 G C AHSP Silent p.V38V 0.18 TCGA-05-4417-01 16 33647451 33647451 T G RP11-812E19.9 Missense_Mutation p.N50T 0.17 tolerated_low_confidence(0.07) benign(0.01) TCGA-05-4417-01 16 50349373 50349373 T C ADCY7 Missense_Mutation p.V1067A 0.05 deleterious(0) probably_damaging(1) TCGA-05-4417-01 16 56374870 56374870 C A GNAO1 Missense_Mutation p.P283Q 0.13 deleterious(0.02) possibly_damaging(0.854) TCGA-05-4417-01 16 68598006 68598006 A T ZFP90 Missense_Mutation p.Q439L 0.06 tolerated(0.37) benign(0.142) TCGA-05-4417-01 16 72984794 72984794 C G ZFHX3 Silent p.L930L 0.28 TCGA-05-4417-01 16 9934526 9934526 G A GRIN2A Silent p.T543T 0.14 TCGA-05-4417-01 17 27401083 27401083 C T TIAF1 Silent p.E45E 0.22 TCGA-05-4417-01 17 29663769 29663769 G C NF1 Silent p.L2088L 0.16 TCGA-05-4417-01 17 34864956 34864956 T C MYO19 Silent p.V392V 0.25 TCGA-05-4417-01 17 39871829 39871829 G - GAST Frame_Shift_Del p.E48Sfs*? 0.30 TCGA-05-4417-01 17 4642104 4642104 G A CXCL16 Missense_Mutation p.A83V 0.20 tolerated(0.28) benign(0.005) TCGA-05-4417-01 17 48680482 48680482 C T CACNA1G Missense_Mutation p.S1364F 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-05-4417-01 17 61987647 61987647 A T CSHL1 Missense_Mutation p.S116T 0.17 deleterious(0.01) possibly_damaging(0.869) TCGA-05-4417-01 17 62006601 62006601 G T CD79B Missense_Mutation p.H226Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-05-4417-01 17 6526310 6526310 C A KIAA0753 Silent p.R332R 0.33 TCGA-05-4417-01 17 66982325 66982325 G A ABCA9 Silent p.D1396D 0.14 TCGA-05-4417-01 17 72310295 72310295 G T DNAI2 Missense_Mutation p.E586D 0.19 tolerated(0.4) unknown(0) TCGA-05-4417-01 17 73747115 73747122 GCTGGGCT - ITGB4 Frame_Shift_Del p.S1239Rfs*4 0.15 TCGA-05-4417-01 17 74307611 74307611 C A PRPSAP1 3'UTR 0.30 TCGA-05-4417-01 18 2884959 2884959 C A EMILIN2 Intron 0.27 TCGA-05-4417-01 18 44424712 44424712 G A PIAS2 Missense_Mutation p.H318Y 0.08 tolerated(0.21) benign(0.002) TCGA-05-4417-01 18 61260167 61260167 G T SERPINB13 Missense_Mutation p.R145L 0.16 deleterious(0.01) probably_damaging(1) TCGA-05-4417-01 18 61305167 61305167 C T SERPINB4 Missense_Mutation p.S320N 0.14 tolerated(0.5) benign(0.002) TCGA-05-4417-01 19 1220410 1220410 A G STK11 Missense_Mutation p.H168R 0.38 deleterious(0) probably_damaging(0.997) TCGA-05-4417-01 19 12902575 12902575 G T JUNB 5'UTR 0.20 TCGA-05-4417-01 19 15295220 15295220 C A NOTCH3 Missense_Mutation p.A818S 0.16 tolerated(1) benign(0.007) TCGA-05-4417-01 19 17405099 17405099 C A ABHD8 Nonsense_Mutation p.E383* 0.16 TCGA-05-4417-01 19 22362761 22362761 C A ZNF676 Missense_Mutation p.E586D 0.20 tolerated(0.05) possibly_damaging(0.75) TCGA-05-4417-01 19 22939511 22939511 G T ZNF99 3'Flank 0.16 TCGA-05-4417-01 19 23557440 23557440 C A ZNF91 Missense_Mutation p.G53C 0.11 deleterious(0) possibly_damaging(0.889) TCGA-05-4417-01 19 30934718 30934718 C A ZNF536 Silent p.L83L 0.24 TCGA-05-4417-01 19 31768669 31768669 C A TSHZ3 Missense_Mutation p.G677V 0.17 tolerated(0.24) benign(0.147) TCGA-05-4417-01 19 35850660 35850660 C A FFAR3 Missense_Mutation p.L290M 0.16 tolerated(0.14) benign(0.017) TCGA-05-4417-01 19 41383145 41383145 C A CYP2A7 Missense_Mutation p.A371S 0.27 deleterious(0.05) benign(0.326) TCGA-05-4417-01 19 43382204 43382204 T A PSG1 Silent p.G97G 0.15 TCGA-05-4417-01 19 45971807 45971807 C T FOSB 5'UTR 0.24 TCGA-05-4417-01 19 48789178 48789178 C A ZNF114 Missense_Mutation p.H99Q 0.23 tolerated(0.45) benign(0.227) TCGA-05-4417-01 19 54314284 54314284 G C NLRP12 Missense_Mutation p.P210R 0.24 deleterious(0.03) probably_damaging(1) TCGA-05-4417-01 19 55672123 55672123 T C DNAAF3 Silent p.Q379Q 0.08 TCGA-05-4417-01 19 57175225 57175225 A T ZNF835 Missense_Mutation p.C448S 0.44 deleterious(0) probably_damaging(1) TCGA-05-4417-01 19 58574842 58574842 C A ZNF135 Silent p.I75I 0.39 TCGA-05-4417-01 19 8996403 8996403 C A MUC16 Silent p.L13723L 0.20 TCGA-05-4417-01 19 9070212 9070212 G T MUC16 Missense_Mutation p.A5745D 0.14 unknown(0) TCGA-05-4417-01 19 9090058 9090058 G T MUC16 Missense_Mutation p.S586Y 0.37 unknown(0) TCGA-05-4417-01 19 9490795 9490795 A T ZNF177 Missense_Mutation p.T106S 0.26 tolerated(0.69) benign(0.352) TCGA-05-4417-01 1 11561596 11561596 C A PTCHD2 Missense_Mutation p.P183T 0.30 tolerated_low_confidence(0.37) benign(0.01) TCGA-05-4417-01 1 11769501 11769501 C G DRAXIN Silent p.P207P 0.33 TCGA-05-4417-01 1 152192644 152192644 G T HRNR Missense_Mutation p.H487Q 0.27 unknown(0) TCGA-05-4417-01 1 155327141 155327141 G C ASH1L Missense_Mutation p.Q2341E 0.08 tolerated_low_confidence(0.08) possibly_damaging(0.85) TCGA-05-4417-01 1 156314480 156314480 G T TSACC Missense_Mutation p.Q48H 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.466) TCGA-05-4417-01 1 158226720 158226720 G T CD1A Missense_Mutation p.G250V 0.26 deleterious(0) probably_damaging(1) TCGA-05-4417-01 1 158324199 158324199 G T CD1E Missense_Mutation p.A31S 0.24 tolerated(0.5) benign(0.093) TCGA-05-4417-01 1 158324240 158324240 C A CD1E Silent p.S44S 0.22 TCGA-05-4417-01 1 158548798 158548798 G T OR10X1 Missense_Mutation p.L298I 0.26 deleterious(0) probably_damaging(0.998) TCGA-05-4417-01 1 158582642 158582642 C A SPTA1 Missense_Mutation p.G2367C 0.31 deleterious(0) probably_damaging(0.988) TCGA-05-4417-01 1 159558144 159558144 G T APCS Missense_Mutation p.K106N 0.18 tolerated(0.6) benign(0.003) TCGA-05-4417-01 1 160156112 160156112 G T ATP1A4 Missense_Mutation p.V1006F 0.24 deleterious(0.04) benign(0.159) TCGA-05-4417-01 1 169346053 169346053 C T BLZF1 Silent p.L102L 0.25 TCGA-05-4417-01 1 17272844 17272844 G A CROCC Missense_Mutation p.A743T 0.16 benign(0.178) TCGA-05-4417-01 1 175086266 175086266 G T TNN Missense_Mutation p.V771L 0.28 tolerated(0.14) benign(0.02) TCGA-05-4417-01 1 176811562 176811562 G - PAPPA2 Frame_Shift_Del p.D1784Tfs*23 0.21 TCGA-05-4417-01 1 192153501 192153501 T A RGS18 Silent p.A175A 0.37 TCGA-05-4417-01 1 197073015 197073015 T G ASPM Missense_Mutation p.K1789T 0.34 deleterious(0) possibly_damaging(0.71) TCGA-05-4417-01 1 215747143 215747143 G T KCTD3 Missense_Mutation p.R33I 0.23 deleterious(0.01) possibly_damaging(0.745) TCGA-05-4417-01 1 216373189 216373189 G T USH2A Silent p.S1197S 0.19 TCGA-05-4417-01 1 227946813 227946813 G T SNAP47 Silent p.G250G 0.25 TCGA-05-4417-01 1 228238405 228238405 C A WNT3A Missense_Mutation p.A121D 0.28 deleterious(0) probably_damaging(0.968) TCGA-05-4417-01 1 231004224 231004224 C A C1orf198 Missense_Mutation p.R12L 0.20 tolerated(0.11) unknown(0) TCGA-05-4417-01 1 237774250 237774250 T A RYR2 Silent p.P1624P 0.21 TCGA-05-4417-01 1 247150209 247150209 G T ZNF695 3'UTR 0.29 TCGA-05-4417-01 1 247654685 247654685 G T OR2W5 RNA 0.36 TCGA-05-4417-01 1 248458178 248458178 C A OR2T12 Missense_Mutation p.A235S 0.25 deleterious(0.01) probably_damaging(0.938) TCGA-05-4417-01 1 248637213 248637213 G T OR2T3 Missense_Mutation p.A188S 0.46 tolerated(0.11) possibly_damaging(0.698) TCGA-05-4417-01 1 34082549 34082549 G A CSMD2 Silent p.P1951P 0.26 TCGA-05-4417-01 1 45470021 45470021 T A HECTD3 Missense_Mutation p.K724M 0.30 deleterious(0) probably_damaging(0.971) TCGA-05-4417-01 1 70339351 70339351 G T LRRC7 Intron 0.42 TCGA-05-4417-01 1 77093237 77093237 T G ST6GALNAC3 Missense_Mutation p.Y242D 0.17 probably_damaging(0.977) TCGA-05-4417-01 1 87045796 87045796 T A CLCA4 Missense_Mutation p.I843N 0.29 deleterious(0) probably_damaging(0.95) TCGA-05-4417-01 1 94335424 94335424 T C DNTTIP2 Missense_Mutation p.K752E 0.31 deleterious_low_confidence(0.01) unknown(0) TCGA-05-4417-01 20 10286783 10286783 T A SNAP25 Missense_Mutation p.S187T 0.28 tolerated(0.69) benign(0.245) TCGA-05-4417-01 20 23017003 23017003 G T SSTR4 Missense_Mutation p.V295L 0.33 tolerated(0.78) benign(0.025) TCGA-05-4417-01 20 2413145 2413145 C G TGM6 Silent p.T659T 0.23 TCGA-05-4417-01 20 36634758 36634758 C A TTI1 Nonsense_Mutation p.E782* 0.17 TCGA-05-4417-01 20 40770554 40770554 C A PTPRT Splice_Site p.X924_splice 0.20 TCGA-05-4417-01 20 4167988 4167988 G C SMOX Silent p.L534L 0.22 TCGA-05-4417-01 20 43029926 43029926 G C HNF4A 5'UTR 0.30 TCGA-05-4417-01 20 44815504 44815504 G A CDH22 Silent p.P502P 0.17 TCGA-05-4417-01 20 57599371 57599371 C A TUBB1 Missense_Mutation p.R297S 0.13 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-05-4417-01 20 57768614 57768614 C A ZNF831 Missense_Mutation p.P847H 0.37 tolerated(0.22) possibly_damaging(0.808) TCGA-05-4417-01 20 58349509 58349509 C A PHACTR3 Missense_Mutation p.Q380K 0.20 tolerated(0.67) benign(0.374) TCGA-05-4417-01 20 61150822 61150822 C A C20orf166 5'UTR 0.22 TCGA-05-4417-01 20 62839282 62839282 A G MYT1 Missense_Mutation p.S245G 0.18 possibly_damaging(0.519) TCGA-05-4417-01 20 8722135 8722135 C G PLCB1 Missense_Mutation p.P813R 0.14 deleterious(0) probably_damaging(1) TCGA-05-4417-01 21 15561682 15561682 A G LIPI Silent p.D56D 0.38 TCGA-05-4417-01 21 47783483 47783483 A T PCNT Missense_Mutation p.K748I 0.22 possibly_damaging(0.902) TCGA-05-4417-01 22 16279214 16279214 C A POTEH Missense_Mutation p.A337S 0.05 deleterious(0.01) possibly_damaging(0.896) TCGA-05-4417-01 22 16287480 16287480 C A POTEH Missense_Mutation p.G136C 0.12 deleterious_low_confidence(0.02) possibly_damaging(0.897) TCGA-05-4417-01 22 17662792 17662792 C A CECR1 Missense_Mutation p.D454Y 0.27 deleterious(0) probably_damaging(1) TCGA-05-4417-01 22 24487629 24487629 G T CABIN1 Missense_Mutation p.W1206C 0.17 deleterious(0) probably_damaging(0.997) TCGA-05-4417-01 22 30735151 30735151 C A SF3A1 Missense_Mutation p.G489C 0.29 deleterious(0) probably_damaging(0.998) TCGA-05-4417-01 22 40066959 40066959 G C CACNA1I Silent p.T1513T 0.24 TCGA-05-4417-01 2 116525943 116525943 G T DPP10 Missense_Mutation p.R399L 0.11 deleterious(0) possibly_damaging(0.583) TCGA-05-4417-01 2 125555740 125555740 C A CNTNAP5 Silent p.T1019T 0.29 TCGA-05-4417-01 2 127451442 127451442 C A GYPC Missense_Mutation p.P37T 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-05-4417-01 2 136570154 136570154 C A LCT Missense_Mutation p.A694S 0.20 tolerated(0.57) benign(0.012) TCGA-05-4417-01 2 1497701 1497701 C G TPO Missense_Mutation p.I632M 0.44 deleterious(0) probably_damaging(0.997) TCGA-05-4417-01 2 155265538 155265538 C A GALNT13 Missense_Mutation p.R447S 0.30 tolerated(0.12) possibly_damaging(0.721) TCGA-05-4417-01 2 155711609 155711609 G T KCNJ3 Missense_Mutation p.L430F 0.18 tolerated_low_confidence(0.06) benign(0.002) TCGA-05-4417-01 2 167322380 167322380 C - SCN7A Frame_Shift_Del p.G261Afs*3 0.09 TCGA-05-4417-01 2 169792745 169792745 C G ABCB11 Missense_Mutation p.G937R 0.14 deleterious(0) probably_damaging(0.983) TCGA-05-4417-01 2 179397295 179397295 G T TTN Missense_Mutation p.L34683I 0.13 TCGA-05-4417-01 2 179482722 179482722 C A TTN Nonsense_Mutation p.G15786* 0.09 TCGA-05-4417-01 2 179567381 179567381 A G TTN Missense_Mutation p.I10078T 0.15 TCGA-05-4417-01 2 179648941 179648941 G T TTN Silent p.P877P 0.09 TCGA-05-4417-01 2 179648942 179648942 G T TTN Missense_Mutation p.P877H 0.09 TCGA-05-4417-01 2 183850951 183850952 - ATA NCKAP1 In_Frame_Ins p.Y323dup 0.18 TCGA-05-4417-01 2 207516601 207516601 G A DYTN Nonsense_Mutation p.R560* 0.14 TCGA-05-4417-01 2 207528023 207528023 C - DYTN Frame_Shift_Del p.D413Ifs*75 0.14 TCGA-05-4417-01 2 211515108 211515108 A T CPS1 Silent p.V1148V 0.11 TCGA-05-4417-01 2 21226018 21226018 G T APOB Missense_Mutation p.H4092Q 0.13 benign(0.14) TCGA-05-4417-01 2 215798856 215798856 G T ABCA12 Missense_Mutation p.N2542K 0.19 deleterious(0) possibly_damaging(0.721) TCGA-05-4417-01 2 234916722 234916722 A T TRPM8 Missense_Mutation p.H1080L 0.09 tolerated(0.05) benign(0) TCGA-05-4417-01 2 242815319 242815319 G T CXXC11 Missense_Mutation p.A538S 0.17 tolerated(0.58) benign(0.012) TCGA-05-4417-01 2 27799474 27799475 - A C2orf16 Frame_Shift_Ins p.N13Kfs*23 0.12 TCGA-05-4417-01 2 31489306 31489306 C T EHD3 Silent p.Y448Y 0.11 TCGA-05-4417-01 2 39088243 39088243 C A DHX57 Missense_Mutation p.V437L 0.34 tolerated(0.41) benign(0.002) TCGA-05-4417-01 2 44051104 44051104 G T ABCG5 Nonsense_Mutation p.Y424* 0.37 TCGA-05-4417-01 2 47690292 47690292 T C MSH2 Silent p.L503L 0.23 TCGA-05-4417-01 2 63380691 63380691 C G WDPCP Missense_Mutation p.R699S 0.37 tolerated(0.48) benign(0.004) TCGA-05-4417-01 2 68765342 68765342 T A APLF Nonsense_Mutation p.Y381* 0.35 TCGA-05-4417-01 2 68765343 68765343 G T APLF Missense_Mutation p.G382W 0.35 deleterious(0) probably_damaging(1) TCGA-05-4417-01 2 73677380 73677380 A T ALMS1 Silent p.T1241T 0.34 TCGA-05-4417-01 2 77746050 77746050 G A LRRTM4 Silent p.C315C 0.14 TCGA-05-4417-01 2 77748824 77748824 C A LRRTM4 5'UTR 0.10 TCGA-05-4417-01 2 79313600 79313600 G T REG1B Missense_Mutation p.L72M 0.25 deleterious(0) probably_damaging(0.941) TCGA-05-4417-01 3 10387773 10387773 G A ATP2B2 Missense_Mutation p.T818M 0.13 deleterious(0.01) probably_damaging(1) TCGA-05-4417-01 3 108107873 108107873 C A MYH15 Nonsense_Mutation p.E1847* 0.27 TCGA-05-4417-01 3 112969439 112969439 C T BOC Silent p.T45T 0.10 TCGA-05-4417-01 3 14220343 14220343 G T LSM3 5'UTR 0.17 TCGA-05-4417-01 3 155199127 155199127 G T PLCH1 Missense_Mutation p.P1571H 0.26 deleterious(0) probably_damaging(1) TCGA-05-4417-01 3 164710112 164710112 C A SI Missense_Mutation p.V1639L 0.30 deleterious(0) possibly_damaging(0.637) TCGA-05-4417-01 3 169953139 169953139 G T PRKCI Nonsense_Mutation p.G75* 0.26 TCGA-05-4417-01 3 172165766 172165766 G A GHSR Silent p.C146C 0.10 TCGA-05-4417-01 3 179069732 179069732 G T MFN1 Missense_Mutation p.D53Y 0.30 deleterious(0.02) benign(0.396) TCGA-05-4417-01 3 195997349 195997349 C G PCYT1A Silent p.A18A 0.35 TCGA-05-4417-01 3 25654005 25654005 C A TOP2B Splice_Site p.X1257_splice 0.21 TCGA-05-4417-01 3 40573561 40573561 G T ZNF621 Missense_Mutation p.K100N 0.23 deleterious(0.01) benign(0.058) TCGA-05-4417-01 3 47703821 47703821 T A SMARCC1 Intron 0.11 TCGA-05-4417-01 3 48603991 48603991 C A COL7A1 Silent p.R2770R 0.14 TCGA-05-4417-01 3 52088145 52088145 C A DUSP7 Missense_Mutation p.G255C 0.15 deleterious(0) probably_damaging(0.995) TCGA-05-4417-01 3 52945171 52945172 - C SFMBT1 Frame_Shift_Ins p.A585Gfs*4 0.16 TCGA-05-4417-01 3 54603989 54603989 A T CACNA2D3 Missense_Mutation p.Q249L 0.15 deleterious(0) probably_damaging(0.962) TCGA-05-4417-01 3 97983970 97983970 C T OR5H6 Missense_Mutation p.P281L 0.22 tolerated(0.4) benign(0.009) TCGA-05-4417-01 4 103964603 103964603 C T SLC9B2 Splice_Site p.X333_splice 0.13 TCGA-05-4417-01 4 119951485 119951485 A T SYNPO2 Missense_Mutation p.S519C 0.13 tolerated(0.18) possibly_damaging(0.649) TCGA-05-4417-01 4 122250567 122250567 A G QRFPR Silent p.L400L 0.18 TCGA-05-4417-01 4 141483349 141483349 C T UCP1 Silent p.K269K 0.21 TCGA-05-4417-01 4 142653921 142653921 G C IL15 Missense_Mutation p.E137Q 0.32 deleterious(0) probably_damaging(1) TCGA-05-4417-01 4 156831356 156831356 T A TDO2 Nonsense_Mutation p.L204* 0.15 TCGA-05-4417-01 4 164271731 164271731 C A NPY5R Silent p.V102V 0.31 TCGA-05-4417-01 4 16900063 16900063 G C LDB2 Missense_Mutation p.P16A 0.06 deleterious(0.02) benign(0.079) TCGA-05-4417-01 4 1803633 1803633 G A FGFR3 Missense_Mutation p.V271M 0.33 deleterious(0) probably_damaging(0.964) TCGA-05-4417-01 4 187455689 187455689 T G MTNR1A Missense_Mutation p.L69F 0.30 deleterious(0) probably_damaging(1) TCGA-05-4417-01 4 46099357 46099357 C A GABRG1 Missense_Mutation p.K38N 0.21 tolerated(0.07) benign(0.383) TCGA-05-4417-01 4 66356169 66356169 G T EPHA5 Missense_Mutation p.A443E 0.20 deleterious(0) probably_damaging(0.996) TCGA-05-4417-01 4 73149142 73149142 C A ADAMTS3 Missense_Mutation p.G1110V 0.15 tolerated_low_confidence(0.18) benign(0.007) TCGA-05-4417-01 4 76452177 76452177 G T THAP6 Missense_Mutation p.S141I 0.35 tolerated(0.31) benign(0.442) TCGA-05-4417-01 4 81188269 81188269 C A FGF5 Silent p.I97I 0.26 TCGA-05-4417-01 4 88996742 88996742 C A PKD2 Missense_Mutation p.L935I 0.04 tolerated_low_confidence(0.13) benign(0.075) TCGA-05-4417-01 5 123980214 123980214 G A ZNF608 Silent p.P1282P 0.15 TCGA-05-4417-01 5 131302125 131302125 A T ACSL6 Missense_Mutation p.I566N 0.24 deleterious(0.01) probably_damaging(0.93) TCGA-05-4417-01 5 140203112 140203112 G A PCDHA5 Silent p.V584V 0.13 TCGA-05-4417-01 5 140228509 140228509 G A PCDHA9 Silent p.A143A 0.03 TCGA-05-4417-01 5 140503357 140503357 G T PCDHB4 Missense_Mutation p.G593C 0.27 deleterious_low_confidence(0.01) benign(0.087) TCGA-05-4417-01 5 140594394 140594394 C A PCDHB13 Silent p.V233V 0.17 TCGA-05-4417-01 5 140730539 140730539 G A PCDHGB1 Missense_Mutation p.V238M 0.23 tolerated(0.07) benign(0.206) TCGA-05-4417-01 5 140755906 140755906 C A PCDHGA6 Silent p.T752T 0.13 TCGA-05-4417-01 5 141248409 141248409 C A PCDH1 Missense_Mutation p.G210W 0.11 deleterious(0) probably_damaging(1) TCGA-05-4417-01 5 150922135 150922135 G T FAT2 Missense_Mutation p.D2851E 0.25 possibly_damaging(0.785) TCGA-05-4417-01 5 161292724 161292724 C A GABRA1 Intron 0.17 TCGA-05-4417-01 5 167182132 167182132 G T TENM2 Intron 0.14 TCGA-05-4417-01 5 170819773 170819773 A G NPM1 Missense_Mutation p.I138V 0.22 tolerated(0.18) benign(0.011) TCGA-05-4417-01 5 176765495 176765495 C A LMAN2 Missense_Mutation p.V143L 0.20 tolerated(0.42) benign(0.002) TCGA-05-4417-01 5 23522959 23522959 G T PRDM9 Missense_Mutation p.D283Y 0.22 deleterious(0) possibly_damaging(0.862) TCGA-05-4417-01 5 37183193 37183193 A G C5orf42 Missense_Mutation p.L1697P 0.30 tolerated(0.11) benign(0.015) TCGA-05-4417-01 5 41009403 41009403 G C MROH2B Missense_Mutation p.I1133M 0.27 deleterious(0.05) benign(0.029) TCGA-05-4417-01 5 41019088 41019088 T A MROH2B Missense_Mutation p.H825L 0.28 tolerated(0.43) benign(0.001) TCGA-05-4417-01 6 10415182 10415182 C A TFAP2A Missense_Mutation p.D13Y 0.10 deleterious(0) possibly_damaging(0.466) TCGA-05-4417-01 6 10415183 10415183 C G TFAP2A Missense_Mutation p.E12D 0.10 deleterious(0.02) benign(0.028) TCGA-05-4417-01 6 117149993 117149993 C A GPRC6A Nonsense_Mutation p.E62* 0.22 TCGA-05-4417-01 6 129371197 129371197 T G LAMA2 Missense_Mutation p.C83G 0.24 deleterious(0) probably_damaging(1) TCGA-05-4417-01 6 130530639 130530639 C A SAMD3 Splice_Site p.X128_splice 0.24 TCGA-05-4417-01 6 130530640 130530640 C A SAMD3 Missense_Mutation p.R128I 0.25 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-05-4417-01 6 132874344 132874344 C T TAAR8 Silent p.V171V 0.12 TCGA-05-4417-01 6 133047925 133047925 C T VNN3 Intron 0.28 TCGA-05-4417-01 6 137323275 137323275 C T IL20RA Missense_Mutation p.G361E 0.29 tolerated(0.66) benign(0.132) TCGA-05-4417-01 6 152647561 152647561 G A SYNE1 Silent p.L5055L 0.32 TCGA-05-4417-01 6 160978463 160978463 G A LPA Missense_Mutation p.T1591I 0.11 tolerated(0.08) probably_damaging(0.988) TCGA-05-4417-01 6 32130370 32130370 G T PPT2 Nonsense_Mutation p.E252* 0.13 TCGA-05-4417-01 6 39580974 39580974 C T KIF6 Missense_Mutation p.M210I 0.16 deleterious(0.02) benign(0.329) TCGA-05-4417-01 6 55196632 55196632 G T GFRAL Missense_Mutation p.A48S 0.44 tolerated(0.07) benign(0.072) TCGA-05-4417-01 6 70991127 70991127 C A COL9A1 Missense_Mutation p.G281V 0.25 unknown(0) TCGA-05-4417-01 6 74351499 74351499 G A SLC17A5 Missense_Mutation p.A147V 0.29 tolerated(0.2) benign(0.177) TCGA-05-4417-01 6 75898156 75898156 C A COL12A1 Missense_Mutation p.D307Y 0.11 probably_damaging(0.989) TCGA-05-4417-01 6 80626442 80626442 T C ELOVL4 Silent p.P276P 0.20 TCGA-05-4417-01 7 100866000 100866000 G T ZNHIT1 Silent p.A46A 0.20 TCGA-05-4417-01 7 106513371 106513371 G A PIK3CG Missense_Mutation p.V759I 0.21 tolerated(0.56) benign(0.009) TCGA-05-4417-01 7 143043264 143043264 C A CLCN1 Missense_Mutation p.T735N 0.26 tolerated(0.55) benign(0.028) TCGA-05-4417-01 7 157926489 157926489 C A PTPRN2 Missense_Mutation p.G479V 0.20 tolerated(0.07) benign(0.243) TCGA-05-4417-01 7 157926490 157926490 C A PTPRN2 Missense_Mutation p.G479W 0.20 deleterious(0.02) benign(0.017) TCGA-05-4417-01 7 2959089 2959089 C T CARD11 Silent p.Q809Q 0.26 TCGA-05-4417-01 7 36655990 36655990 G A AOAH Missense_Mutation p.S281F 0.20 deleterious(0) probably_damaging(0.997) TCGA-05-4417-01 7 42088216 42088216 C A GLI3 Missense_Mutation p.A185S 0.29 tolerated(0.28) benign(0.345) TCGA-05-4417-01 7 64442493 64442493 C G ZNF117 Intron 0.11 TCGA-05-4417-01 7 82585225 82585225 C A PCLO Missense_Mutation p.A1682S 0.19 unknown(0) TCGA-05-4417-01 7 84697506 84697506 C G SEMA3D Splice_Site p.X197_splice 0.12 TCGA-05-4417-01 7 95499231 95499231 C T DYNC1I1 Silent p.T154T 0.23 TCGA-05-4417-01 8 101011627 101011627 A G RGS22 Missense_Mutation p.W938R 0.22 tolerated(0.08) probably_damaging(0.998) TCGA-05-4417-01 8 101065029 101065029 C A RGS22 Splice_Site p.X563_splice 0.36 TCGA-05-4417-01 8 101065030 101065030 C A RGS22 Missense_Mutation p.Q563H 0.36 tolerated(0.21) benign(0.02) TCGA-05-4417-01 8 113518953 113518953 T C CSMD3 Missense_Mutation p.N1621S 0.31 tolerated(0.85) possibly_damaging(0.88) TCGA-05-4417-01 8 121262899 121262899 C A COL14A1 Missense_Mutation p.N882K 0.41 deleterious(0.02) possibly_damaging(0.472) TCGA-05-4417-01 8 122627237 122627237 A C HAS2 Missense_Mutation p.S257R 0.20 deleterious(0) probably_damaging(0.985) TCGA-05-4417-01 8 131955633 131955633 G T ADCY8 Silent p.L439L 0.28 TCGA-05-4417-01 8 133584708 133584708 A G LRRC6 Missense_Mutation p.L416P 0.31 deleterious(0.02) probably_damaging(0.996) TCGA-05-4417-01 8 139163840 139163840 G A FAM135B Missense_Mutation p.P960S 0.22 tolerated_low_confidence(0.22) benign(0.007) TCGA-05-4417-01 8 139255226 139255226 A G FAM135B Silent p.L210L 0.11 TCGA-05-4417-01 8 13947822 13947822 C A SGCZ 3'UTR 0.16 TCGA-05-4417-01 8 139691879 139691879 A T COL22A1 Missense_Mutation p.L1018Q 0.31 unknown(0) TCGA-05-4417-01 8 145318037 145318037 G A KM-PA-2 Missense_Mutation p.T426M 0.23 tolerated(0.05) benign(0.069) TCGA-05-4417-01 8 30407059 30407059 G T RBPMS 3'Flank 0.21 TCGA-05-4417-01 8 39009054 39009054 T C ADAM32 Missense_Mutation p.F171S 0.24 tolerated(0.32) benign(0.007) TCGA-05-4417-01 8 52232511 52232511 T A PXDNL Silent p.G1444G 0.13 TCGA-05-4417-01 8 66539450 66539450 C A ARMC1 Splice_Site p.X61_splice 0.20 TCGA-05-4417-01 8 85097216 85097216 C A RALYL 5'UTR 0.29 TCGA-05-4417-01 8 89053741 89053741 C A MMP16 Missense_Mutation p.G591V 0.20 deleterious(0) probably_damaging(0.959) TCGA-05-4417-01 8 92988184 92988184 G T RUNX1T1 Missense_Mutation p.L444I 0.22 tolerated(0.23) benign(0.022) TCGA-05-4417-01 9 112900028 112900028 G C PALM2-AKAP2 Missense_Mutation p.G735A 0.13 deleterious(0) probably_damaging(0.976) TCGA-05-4417-01 9 113173903 113173903 C G SVEP1 Missense_Mutation p.A2030P 0.26 probably_damaging(1) TCGA-05-4417-01 9 125148974 125148974 C A PTGS1 Missense_Mutation p.A420D 0.39 tolerated(0.36) benign(0.131) TCGA-05-4417-01 9 126214567 126214567 A C DENND1A Silent p.T429T 0.09 TCGA-05-4417-01 9 21077501 21077501 A G IFNB1 Missense_Mutation p.L123P 0.29 deleterious(0) probably_damaging(0.998) TCGA-05-4417-01 9 34689810 34689810 C T CCL19 3'UTR 0.08 TCGA-05-4417-01 9 37711392 37711392 G C FRMPD1 Silent p.S136S 0.27 TCGA-05-4417-01 9 6587241 6587241 G T GLDC Missense_Mutation p.P584T 0.36 deleterious(0) probably_damaging(1) TCGA-05-4417-01 9 8504367 8504367 C G PTPRD Silent p.L572L 0.25 TCGA-05-4417-01 9 88292350 88292350 C A AGTPBP1 Splice_Site p.X146_splice 0.27 TCGA-05-4417-01 X 107457416 107457416 C A COL4A6 Missense_Mutation p.D124Y 0.23 unknown(0) TCGA-05-4417-01 X 109695218 109695218 C A RGAG1 Missense_Mutation p.T458K 0.13 tolerated(0.05) benign(0.022) TCGA-05-4417-01 X 109696443 109696443 A T RGAG1 Silent p.P866P 0.27 TCGA-05-4417-01 X 110489966 110489966 A T CAPN6 Missense_Mutation p.C589S 0.29 tolerated(0.41) benign(0.015) TCGA-05-4417-01 X 118123383 118123383 C A LONRF3 Missense_Mutation p.L358I 0.12 tolerated(0.07) benign(0.021) TCGA-05-4417-01 X 125686593 125686593 G A DCAF12L1 5'UTR 0.27 TCGA-05-4417-01 X 129149209 129149209 G T BCORL1 Missense_Mutation p.G821W 0.14 probably_damaging(0.999) TCGA-05-4417-01 X 134156366 134156366 C G FAM127C Missense_Mutation p.E42Q 0.17 deleterious(0.02) possibly_damaging(0.865) TCGA-05-4417-01 X 136112793 136112793 G T GPR101 Missense_Mutation p.D347E 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.842) TCGA-05-4417-01 X 138612946 138612946 T C F9 Missense_Mutation p.M8T 0.21 deleterious(0) probably_damaging(0.959) TCGA-05-4417-01 X 144904084 144904084 G T SLITRK2 Missense_Mutation p.E47D 0.25 tolerated(0.6) probably_damaging(0.997) TCGA-05-4417-01 X 149013595 149013595 C A MAGEA8 Silent p.T183T 0.11 TCGA-05-4417-01 X 150573589 150573589 G T VMA21 3'UTR 0.19 TCGA-05-4417-01 X 152721766 152721766 T A HAUS7 Missense_Mutation p.Q231L 0.14 deleterious(0.01) possibly_damaging(0.888) TCGA-05-4417-01 X 153880487 153880487 G T CTAG2 3'UTR 0.12 TCGA-05-4417-01 X 154508497 154508497 C A CLIC2 Missense_Mutation p.D175Y 0.10 deleterious(0) probably_damaging(1) TCGA-05-4417-01 X 155003662 155003662 C G SPRY3 Silent p.S43S 0.21 TCGA-05-4417-01 X 3228256 3228256 C G MXRA5 Missense_Mutation p.G2663A 0.30 tolerated(0.33) benign(0.029) TCGA-05-4417-01 X 3242605 3242605 T C MXRA5 Missense_Mutation p.Y374C 0.43 deleterious(0) probably_damaging(0.999) TCGA-05-4417-01 X 54817333 54817333 C A ITIH6 Missense_Mutation p.G185C 0.42 deleterious(0) probably_damaging(0.999) TCGA-05-4417-01 X 6069589 6069589 A C NLGN4X 5'UTR 0.40 TCGA-05-4417-01 X 63490911 63490911 C A MTMR8 Missense_Mutation p.Q508H 0.33 tolerated(1) benign(0.017) TCGA-05-4417-01 X 70080747 70080747 G T TEX11 Missense_Mutation p.A110D 0.20 tolerated(0.45) benign(0.002) TCGA-05-4417-01 X 72667475 72667475 C T CDX4 Missense_Mutation p.P129L 0.46 deleterious(0.01) possibly_damaging(0.478) TCGA-05-4417-01 X 74742811 74742811 G A ZDHHC15 Missense_Mutation p.R17C 0.23 tolerated(0.21) possibly_damaging(0.676) TCGA-05-4417-01 X 90691248 90691248 A T PABPC5 Silent p.P224P 0.40 TCGA-05-4417-01 X 99551618 99551620 CCT AA PCDH19 Frame_Shift_Del p.K1034Nfs*8 0.49 TCGA-05-4418-01 10 108371774 108371774 G T SORCS1 Missense_Mutation p.F976L 0.16 deleterious(0.02) benign(0.262) TCGA-05-4418-01 10 118355764 118355764 T A PNLIPRP1 Silent p.I168I 0.43 TCGA-05-4418-01 10 134188652 134188652 G A LRRC27 Missense_Mutation p.G500E 0.07 deleterious(0) probably_damaging(0.972) TCGA-05-4418-01 10 15326063 15326063 G T FAM171A1 Missense_Mutation p.Q47K 0.21 tolerated(0.11) probably_damaging(0.954) TCGA-05-4418-01 10 15573137 15573137 G A ITGA8 Missense_Mutation p.P965L 0.22 tolerated(0.22) benign(0.003) TCGA-05-4418-01 10 25886829 25886829 T C GPR158 Silent p.I758I 0.16 TCGA-05-4418-01 10 38120804 38120804 T C ZNF248 Missense_Mutation p.I493M 0.22 tolerated(0.08) benign(0.11) TCGA-05-4418-01 10 43090009 43090020 ACGTCCATGTTA - ZNF33B In_Frame_Del p.F126_V130delinsL 0.12 TCGA-05-4418-01 10 50818982 50818982 G T SLC18A3 Missense_Mutation p.G66W 0.26 deleterious(0.01) possibly_damaging(0.836) TCGA-05-4418-01 10 50818983 50818983 G T SLC18A3 Missense_Mutation p.G66V 0.27 tolerated(0.08) benign(0.129) TCGA-05-4418-01 10 70666761 70666761 G T DDX50 Nonsense_Mutation p.E128* 0.17 TCGA-05-4418-01 10 72360447 72360447 C A PRF1 Missense_Mutation p.G71V 0.34 deleterious(0) possibly_damaging(0.905) TCGA-05-4418-01 10 85961589 85961589 C A CDHR1 Missense_Mutation p.D184E 0.25 deleterious(0.01) benign(0.25) TCGA-05-4418-01 10 93695424 93695424 C T BTAF1 Missense_Mutation p.L9F 0.21 deleterious(0) probably_damaging(0.938) TCGA-05-4418-01 11 1080962 1080962 T A MUC2 Missense_Mutation p.L449Q 0.40 probably_damaging(0.997) TCGA-05-4418-01 11 111594606 111594606 C - SIK2 Frame_Shift_Del p.Y846Ifs*32 0.22 TCGA-05-4418-01 11 124744018 124744018 A G ROBO3 Missense_Mutation p.T613A 0.16 tolerated(0.11) benign(0.33) TCGA-05-4418-01 11 28106288 28106288 C A KIF18A Missense_Mutation p.G322V 0.17 deleterious(0) probably_damaging(1) TCGA-05-4418-01 11 31669325 31669325 G T ELP4 Missense_Mutation p.D322Y 0.24 deleterious(0) probably_damaging(1) TCGA-05-4418-01 11 33112197 33112197 G T CSTF3 Silent p.R508R 0.18 TCGA-05-4418-01 11 3845193 3845193 C T PGAP2 Silent p.G143G 0.12 TCGA-05-4418-01 11 4661687 4661687 G T OR51D1 Missense_Mutation p.D223Y 0.21 deleterious(0) probably_damaging(1) TCGA-05-4418-01 11 55703060 55703060 C T OR5I1 Missense_Mutation p.D273N 0.24 deleterious(0.03) benign(0.009) TCGA-05-4418-01 11 55904471 55904471 C T OR8J3 Missense_Mutation p.A242T 0.28 deleterious(0.03) benign(0.127) TCGA-05-4418-01 11 56143647 56143647 C T OR8U1 Missense_Mutation p.P183L 0.07 deleterious(0.01) probably_damaging(1) TCGA-05-4418-01 11 59857910 59857910 T G MS4A2 Missense_Mutation p.F96L 0.21 deleterious(0.01) possibly_damaging(0.837) TCGA-05-4418-01 11 6340270 6340270 G A PRKCDBP 3'UTR 0.31 TCGA-05-4418-01 11 63964764 63964764 G A STIP1 Missense_Mutation p.G232R 0.33 deleterious(0) probably_damaging(1) TCGA-05-4418-01 11 64402833 64402833 C A NRXN2 Silent p.L1165L 0.24 TCGA-05-4418-01 11 64884413 64884413 G A ZNHIT2 Missense_Mutation p.S238F 0.23 tolerated(0.14) benign(0.28) TCGA-05-4418-01 11 6500372 6500372 T A ARFIP2 Nonsense_Mutation p.K105* 0.21 TCGA-05-4418-01 11 68455487 68455487 G A GAL Missense_Mutation p.V48I 0.29 tolerated(1) benign(0.005) TCGA-05-4418-01 11 70221071 70221071 A C PPFIA1 Missense_Mutation p.I1063L 0.13 tolerated(0.17) benign(0.352) TCGA-05-4418-01 11 72028186 72028186 T C CLPB Missense_Mutation p.I348V 0.26 tolerated(0.79) benign(0.016) TCGA-05-4418-01 11 8161742 8161742 T A RIC3 Splice_Site p.X42_splice 0.11 TCGA-05-4418-01 12 104851171 104851171 C T CHST11 5'UTR 0.32 TCGA-05-4418-01 12 109332689 109332689 G T SVOP Missense_Mutation p.Q206K 0.47 tolerated(0.98) benign(0.03) TCGA-05-4418-01 12 112654685 112654685 C A HECTD4 Missense_Mutation p.G2280V 0.20 probably_damaging(0.975) TCGA-05-4418-01 12 120613618 120613618 G C GCN1L1 Missense_Mutation p.L325V 0.40 probably_damaging(0.994) TCGA-05-4418-01 12 124496938 124496938 G T ZNF664 Missense_Mutation p.V83L 0.45 deleterious(0) benign(0.186) TCGA-05-4418-01 12 125834059 125834059 C T TMEM132B Silent p.L38L 0.15 TCGA-05-4418-01 12 129559341 129559341 G T TMEM132D Silent p.I793I 0.39 TCGA-05-4418-01 12 131590398 131590398 C G GPR133 Silent p.L625L 0.38 TCGA-05-4418-01 12 13715944 13715944 T G GRIN2B Missense_Mutation p.T1410P 0.45 tolerated(0.14) benign(0.044) TCGA-05-4418-01 12 21457403 21457403 T C SLCO1A2 Missense_Mutation p.I183V 0.42 tolerated(0.19) benign(0.075) TCGA-05-4418-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.41 deleterious(0.04) probably_damaging(0.993) TCGA-05-4418-01 12 45795743 45795743 A G ANO6 Missense_Mutation p.I539V 0.10 tolerated(0.71) benign(0.012) TCGA-05-4418-01 12 48888730 48888730 A G C12orf54 3'UTR 0.16 TCGA-05-4418-01 12 53722173 53722173 C T SP7 Silent p.E351E 0.38 TCGA-05-4418-01 12 53875772 53875772 C T MAP3K12 Missense_Mutation p.E845K 0.38 tolerated_low_confidence(0.06) benign(0.006) TCGA-05-4418-01 12 53876414 53876414 G T MAP3K12 Silent p.R725R 0.39 TCGA-05-4418-01 12 63042381 63042381 G T PPM1H Missense_Mutation p.A478D 0.23 deleterious(0) probably_damaging(1) TCGA-05-4418-01 12 66786504 66786504 T G GRIP1 Missense_Mutation p.Q689P 0.14 deleterious(0) possibly_damaging(0.607) TCGA-05-4418-01 12 71978097 71978097 C T LGR5 Silent p.A769A 0.43 TCGA-05-4418-01 12 95927916 95927916 C A USP44 Missense_Mutation p.W39C 0.14 deleterious(0) probably_damaging(1) TCGA-05-4418-01 13 102105283 102105286 GTAA - ITGBL1 Splice_Site p.X33_splice 0.30 TCGA-05-4418-01 13 31513891 31513891 C T TEX26 Missense_Mutation p.T41I 0.19 tolerated(0.07) possibly_damaging(0.718) TCGA-05-4418-01 13 33344830 33344830 A T PDS5B Missense_Mutation p.Q1368L 0.22 deleterious_low_confidence(0.02) benign(0.025) TCGA-05-4418-01 13 39261752 39261752 C T FREM2 Missense_Mutation p.P91S 0.50 deleterious(0.03) benign(0.1) TCGA-05-4418-01 13 77656020 77656020 T G MYCBP2 Missense_Mutation p.E3677D 0.23 probably_damaging(0.968) TCGA-05-4418-01 13 99127205 99127205 C T STK24 Missense_Mutation p.G168D 0.14 deleterious(0) probably_damaging(0.999) TCGA-05-4418-01 14 102028496 102028496 C A DIO3 Missense_Mutation p.S221R 0.19 deleterious(0.04) probably_damaging(0.93) TCGA-05-4418-01 14 102028497 102028497 C A DIO3 Missense_Mutation p.L222M 0.19 deleterious(0.04) probably_damaging(0.997) TCGA-05-4418-01 14 20216428 20216428 C A OR4Q3 Missense_Mutation p.P281H 0.09 deleterious(0) probably_damaging(1) TCGA-05-4418-01 14 20612554 20612554 C T OR4N5 Silent p.V220V 0.20 TCGA-05-4418-01 14 23746238 23746238 T A HOMEZ Missense_Mutation p.N67Y 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-05-4418-01 14 24620512 24620512 C G RNF31 Missense_Mutation p.A554G 0.28 deleterious(0.01) possibly_damaging(0.905) TCGA-05-4418-01 14 24620762 24620762 A T RNF31 Silent p.G602G 0.16 TCGA-05-4418-01 14 36004201 36004201 C A INSM2 Missense_Mutation p.A248E 0.35 tolerated(0.18) benign(0.035) TCGA-05-4418-01 14 50649236 50649236 G A SOS2 Missense_Mutation p.T268I 0.27 deleterious(0) possibly_damaging(0.871) TCGA-05-4418-01 14 52186866 52186866 C T FRMD6 Missense_Mutation p.A373V 0.21 tolerated(0.15) benign(0.006) TCGA-05-4418-01 14 58471506 58471506 C T C14orf37 Missense_Mutation p.S758N 0.18 deleterious(0) benign(0.383) TCGA-05-4418-01 14 68272236 68272236 C A ZFYVE26 Missense_Mutation p.G373C 0.30 deleterious(0) probably_damaging(1) TCGA-05-4418-01 14 69259708 69259708 C A ZFP36L1 5'UTR 0.25 TCGA-05-4418-01 14 73220047 73220047 C G DPF3 Missense_Mutation p.A76P 0.17 deleterious(0.01) probably_damaging(0.958) TCGA-05-4418-01 14 79175581 79175581 A T NRXN3 Missense_Mutation p.I42F 0.25 tolerated(0.95) probably_damaging(0.956) TCGA-05-4418-01 14 88652442 88652442 G T KCNK10 Silent p.R357R 0.26 TCGA-05-4418-01 14 88729728 88729728 A G KCNK10 Missense_Mutation p.W74R 0.21 tolerated(0.07) possibly_damaging(0.502) TCGA-05-4418-01 14 99724120 99724120 C T BCL11B Missense_Mutation p.E39K 0.26 tolerated(0.38) benign(0) TCGA-05-4418-01 15 102312716 102312716 G A RN7SL209P 3'Flank 0.23 TCGA-05-4418-01 15 22925774 22925774 C T CYFIP1 Intron 0.22 TCGA-05-4418-01 15 27185181 27185181 C A GABRA5 Silent p.S278S 0.24 TCGA-05-4418-01 15 42041781 42041781 G T MGA Missense_Mutation p.K1992N 0.32 tolerated_low_confidence(0.12) benign(0.097) TCGA-05-4418-01 15 45391598 45391598 G T DUOX2 Missense_Mutation p.N1166K 0.28 tolerated(0.58) benign(0.029) TCGA-05-4418-01 15 48063266 48063266 G T SEMA6D Missense_Mutation p.D836Y 0.29 deleterious(0.04) probably_damaging(0.91) TCGA-05-4418-01 15 49030735 49030735 C A CEP152 Missense_Mutation p.G1615V 0.22 tolerated(0.21) benign(0.047) TCGA-05-4418-01 15 49030736 49030736 C A CEP152 Missense_Mutation p.G1615C 0.22 tolerated(0.17) benign(0.004) TCGA-05-4418-01 15 56657645 56657645 G T TEX9 5'UTR 0.27 TCGA-05-4418-01 15 63362066 63362066 C T TPM1 Intron 0.26 TCGA-05-4418-01 15 72146723 72146723 T C MYO9A Missense_Mutation p.D2114G 0.26 deleterious(0) probably_damaging(1) TCGA-05-4418-01 15 75652055 75652055 C T MAN2C1 Silent p.E618E 0.23 TCGA-05-4418-01 15 75975009 75975009 C G CSPG4 Silent p.V1574V 0.24 TCGA-05-4418-01 15 89070888 89070888 C T DET1 Missense_Mutation p.E416K 0.30 tolerated(0.83) benign(0.049) TCGA-05-4418-01 16 24373225 24373225 G A CACNG3 3'UTR 0.15 TCGA-05-4418-01 16 24802953 24802953 G T TNRC6A Missense_Mutation p.R997L 0.16 deleterious(0) probably_damaging(0.998) TCGA-05-4418-01 16 27772805 27772805 G T KIAA0556 Missense_Mutation p.G1235C 0.16 deleterious(0) probably_damaging(0.994) TCGA-05-4418-01 16 30991099 30991099 C T SETD1A Missense_Mutation p.P1331L 0.33 unknown(0) TCGA-05-4418-01 16 31374568 31374568 T A ITGAX Missense_Mutation p.L528Q 0.24 deleterious(0) probably_damaging(0.997) TCGA-05-4418-01 16 31484820 31484820 C A TGFB1I1 Silent p.P24P 0.14 TCGA-05-4418-01 16 34739716 34739716 G T RP11-80F22.15 RNA 0.21 TCGA-05-4418-01 16 46962902 46962902 A G GPT2 Missense_Mutation p.Y522C 0.23 deleterious(0) probably_damaging(0.931) TCGA-05-4418-01 16 72830619 72830619 A T ZFHX3 Missense_Mutation p.C1988S 0.23 probably_damaging(0.942) TCGA-05-4418-01 16 823017 823017 T G MSLNL Missense_Mutation p.Q723P 0.10 probably_damaging(0.997) TCGA-05-4418-01 16 85945192 85945192 A T IRF8 Silent p.A125A 0.19 TCGA-05-4418-01 17 10210316 10210316 C A MYH13 Silent p.V1745V 0.26 TCGA-05-4418-01 17 10314198 10314198 G T MYH8 Missense_Mutation p.H495N 0.23 deleterious(0.01) possibly_damaging(0.578) TCGA-05-4418-01 17 18058480 18058480 G A MYO15A Missense_Mutation p.V2761M 0.34 unknown(0) TCGA-05-4418-01 17 26114745 26114745 T C NOS2 Silent p.Q142Q 0.25 TCGA-05-4418-01 17 26114747 26114747 G C NOS2 Missense_Mutation p.Q142E 0.25 tolerated(0.42) possibly_damaging(0.757) TCGA-05-4418-01 17 28791816 28791816 A G CPD Missense_Mutation p.Y1376C 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-05-4418-01 17 2966252 2966252 G T OR1D5 Missense_Mutation p.S217Y 0.19 deleterious(0) probably_damaging(1) TCGA-05-4418-01 17 38636951 38636951 C A TNS4 Splice_Site p.X581_splice 0.15 TCGA-05-4418-01 17 39334304 39334304 G A KRTAP4-2 Missense_Mutation p.P38L 0.24 deleterious(0) unknown(0) TCGA-05-4418-01 17 43907550 43907550 C A CRHR1 Silent p.T204T 0.34 TCGA-05-4418-01 17 48148712 48148713 - A ITGA3 Frame_Shift_Ins p.N265Kfs*55 0.38 TCGA-05-4418-01 17 600720 600720 G T VPS53 Missense_Mutation p.L75M 0.32 tolerated(0.06) probably_damaging(0.951) TCGA-05-4418-01 17 600722 600722 C T VPS53 Missense_Mutation p.R74K 0.31 tolerated(0.95) benign(0.003) TCGA-05-4418-01 17 63534419 63534419 C G AXIN2 Missense_Mutation p.A368P 0.20 tolerated(0.18) probably_damaging(0.951) TCGA-05-4418-01 17 64770156 64770156 G A PRKCA Missense_Mutation p.V526I 0.06 deleterious(0.04) benign(0.325) TCGA-05-4418-01 17 7405880 7405880 G A POLR2A Missense_Mutation p.M872I 0.24 probably_damaging(0.959) TCGA-05-4418-01 17 7405883 7405883 G A POLR2A Silent p.V873V 0.23 TCGA-05-4418-01 17 79182788 79182788 T C AZI1 Missense_Mutation p.N71S 0.29 deleterious(0.02) benign(0.223) TCGA-05-4418-01 17 9820602 9820602 C G GAS7 Missense_Mutation p.E458D 0.27 deleterious(0.01) probably_damaging(0.982) TCGA-05-4418-01 18 23713903 23713903 G C PSMA8 5'UTR 0.29 TCGA-05-4418-01 18 67993064 67993064 G A SOCS6 Missense_Mutation p.G387E 0.24 deleterious(0) probably_damaging(1) TCGA-05-4418-01 18 724522 724522 C A YES1 Missense_Mutation p.D512Y 0.29 deleterious(0.01) probably_damaging(0.952) TCGA-05-4418-01 18 8406167 8406167 A G PTPRM 3'UTR 0.21 TCGA-05-4418-01 19 10600477 10600477 T C KEAP1 Missense_Mutation p.R460G 0.35 deleterious(0) probably_damaging(1) TCGA-05-4418-01 19 22363270 22363270 C A ZNF676 Nonsense_Mutation p.G417* 0.38 TCGA-05-4418-01 19 30934586 30934586 C A ZNF536 Silent p.I39I 0.23 TCGA-05-4418-01 19 34922808 34922808 A G UBA2 Missense_Mutation p.I89V 0.27 tolerated(0.06) probably_damaging(0.923) TCGA-05-4418-01 19 3664855 3664855 C A PIP5K1C Missense_Mutation p.G62C 0.34 deleterious(0.01) possibly_damaging(0.836) TCGA-05-4418-01 19 41081361 41081361 G A SPTBN4 Silent p.A2527A 0.29 TCGA-05-4418-01 19 41937300 41937300 A C ATP5SL 3'Flank 0.21 TCGA-05-4418-01 19 43358133 43358133 C A PSG10P RNA 0.29 TCGA-05-4418-01 19 44470819 44470819 A T ZNF221 Missense_Mutation p.T389S 0.28 tolerated(0.08) possibly_damaging(0.769) TCGA-05-4418-01 19 45762388 45762388 A T MARK4 Missense_Mutation p.I65F 0.23 deleterious(0) benign(0.055) TCGA-05-4418-01 19 4685763 4685763 G A DPP9 Missense_Mutation p.P636S 0.27 deleterious(0.03) probably_damaging(0.91) TCGA-05-4418-01 19 49526347 49526347 G A CGB Silent p.P98P 0.16 TCGA-05-4418-01 19 51446843 51446843 C A KLK5 3'UTR 0.24 TCGA-05-4418-01 19 51483646 51483646 G T KLK7 Missense_Mutation p.Q107K 0.31 tolerated(1) benign(0.003) TCGA-05-4418-01 19 53302177 53302177 C G ZNF28 3'UTR 0.32 TCGA-05-4418-01 19 53762540 53762540 C A VN1R2 Nonsense_Mutation p.Y304* 0.27 TCGA-05-4418-01 19 53952872 53952872 T C ZNF761 RNA 0.33 TCGA-05-4418-01 19 54544178 54544178 G T VSTM1 3'UTR 0.32 TCGA-05-4418-01 19 55340905 55340905 T A KIR3DL1 Missense_Mutation p.C364S 0.47 deleterious(0.01) benign(0.094) TCGA-05-4418-01 19 58579319 58579319 A G ZNF135 Silent p.T513T 0.15 TCGA-05-4418-01 19 58579321 58579321 G T ZNF135 Missense_Mutation p.G514V 0.16 deleterious(0) probably_damaging(1) TCGA-05-4418-01 19 9077163 9077163 G T MUC16 Missense_Mutation p.S3428Y 0.41 unknown(0) TCGA-05-4418-01 1 10155625 10155625 G A UBE4B Missense_Mutation p.M106I 0.32 tolerated(0.08) benign(0.019) TCGA-05-4418-01 1 10407885 10407885 G A KIF1B Silent p.Q1242Q 0.23 TCGA-05-4418-01 1 10407886 10407886 G T KIF1B Splice_Site p.X1242_splice 0.23 TCGA-05-4418-01 1 109241810 109241810 G C PRPF38B Missense_Mutation p.R270P 0.31 tolerated(0.08) unknown(0) TCGA-05-4418-01 1 11008316 11008316 G A C1orf127 Missense_Mutation p.R626C 0.15 tolerated(0.07) possibly_damaging(0.55) TCGA-05-4418-01 1 1118337 1118337 C T TTLL10 Missense_Mutation p.A333V 0.17 tolerated(0.08) possibly_damaging(0.507) TCGA-05-4418-01 1 12776245 12776245 G A AADACL3 5'UTR 0.13 TCGA-05-4418-01 1 144931038 144931038 G C PDE4DIP Intron 0.08 TCGA-05-4418-01 1 151110269 151110269 T A SEMA6C Missense_Mutation p.H225L 0.22 deleterious(0) benign(0.402) TCGA-05-4418-01 1 152191540 152191540 G T HRNR Silent p.G855G 0.41 TCGA-05-4418-01 1 152882670 152882670 C A IVL Missense_Mutation p.Q133K 0.22 tolerated_low_confidence(0.07) benign(0.035) TCGA-05-4418-01 1 155207330 155207330 C A GBA Missense_Mutation p.W267C 0.13 deleterious(0) probably_damaging(0.994) TCGA-05-4418-01 1 155708099 155708099 G A DAP3 3'UTR 0.18 TCGA-05-4418-01 1 156914841 156914841 C A ARHGEF11 Missense_Mutation p.R987S 0.26 deleterious(0) benign(0.245) TCGA-05-4418-01 1 160063683 160063683 C T IGSF8 Missense_Mutation p.G241R 0.34 tolerated(0.09) probably_damaging(1) TCGA-05-4418-01 1 161970075 161970075 G T OLFML2B Silent p.I259I 0.28 TCGA-05-4418-01 1 186278009 186278009 G T PRG4 Missense_Mutation p.R1053L 0.18 unknown(0) TCGA-05-4418-01 1 192985378 192985378 C A UCHL5 3'UTR 0.21 TCGA-05-4418-01 1 19443790 19443790 C A UBR4 Missense_Mutation p.R3583L 0.34 probably_damaging(0.931) TCGA-05-4418-01 1 197390532 197390532 T C CRB1 Missense_Mutation p.F525S 0.36 tolerated(0.24) possibly_damaging(0.756) TCGA-05-4418-01 1 201044702 201044702 C A CACNA1S Silent p.G623G 0.28 TCGA-05-4418-01 1 204587527 204587527 G T LRRN2 Silent p.R532R 0.32 TCGA-05-4418-01 1 209801421 209801421 C A LAMB3 Missense_Mutation p.G416V 0.20 deleterious(0) probably_damaging(0.973) TCGA-05-4418-01 1 214818476 214818476 G T CENPF Nonsense_Mutation p.E1855* 0.11 TCGA-05-4418-01 1 220091866 220091866 G C SLC30A10 Intron 0.14 TCGA-05-4418-01 1 229588306 229588306 G A NUP133 Missense_Mutation p.A1022V 0.23 tolerated(0.3) benign(0.335) TCGA-05-4418-01 1 237656365 237656365 C A RYR2 Missense_Mutation p.R647S 0.21 benign(0.305) TCGA-05-4418-01 1 238048738 238048738 G T ZP4 Silent p.P371P 0.16 TCGA-05-4418-01 1 247694786 247694786 C A OR2C3 3'UTR 0.33 TCGA-05-4418-01 1 247768887 247768887 G A OR2G3 5'UTR 0.29 TCGA-05-4418-01 1 248263535 248263535 C A OR2L13 Silent p.P286P 0.13 TCGA-05-4418-01 1 248308920 248308920 C T OR2M5 Silent p.I157I 0.21 TCGA-05-4418-01 1 248457981 248457981 T A OR2T12 Missense_Mutation p.K300N 0.08 deleterious(0.03) benign(0.008) TCGA-05-4418-01 1 25880433 25880433 G T LDLRAP1 Missense_Mutation p.D37Y 0.19 deleterious(0) probably_damaging(0.92) TCGA-05-4418-01 1 42922700 42922700 A G PPCS Missense_Mutation p.Y155C 0.30 deleterious(0) probably_damaging(1) TCGA-05-4418-01 1 44474186 44474186 G C SLC6A9 Silent p.P216P 0.23 TCGA-05-4418-01 1 47030775 47030775 C T MKNK1 Missense_Mutation p.G236S 0.17 tolerated(0.05) benign(0.305) TCGA-05-4418-01 1 52343944 52343944 C A NRD1 Intron 0.22 TCGA-05-4418-01 1 62740193 62740193 C A KANK4 Missense_Mutation p.G195C 0.21 deleterious(0.01) benign(0.112) TCGA-05-4418-01 1 75037769 75037769 G T C1orf173 Missense_Mutation p.R1209S 0.34 tolerated(0.75) benign(0.003) TCGA-05-4418-01 1 75608973 75608973 G A LHX8 Missense_Mutation p.R187K 0.21 tolerated(0.34) possibly_damaging(0.818) TCGA-05-4418-01 1 82408764 82408764 T C LPHN2 Missense_Mutation p.I170T 0.12 deleterious(0.03) possibly_damaging(0.562) TCGA-05-4418-01 1 85648290 85648290 A G SYDE2 Missense_Mutation p.S679P 0.39 deleterious(0) probably_damaging(0.999) TCGA-05-4418-01 1 86900337 86900337 C A CLCA2 Missense_Mutation p.T294N 0.14 deleterious(0.03) benign(0.157) TCGA-05-4418-01 1 90179493 90179493 A T LRRC8C Missense_Mutation p.K455M 0.23 deleterious(0.02) benign(0.299) TCGA-05-4418-01 20 1161882 1161882 G A TMEM74B Silent p.L127L 0.30 TCGA-05-4418-01 20 23586393 23586393 C A CST9 Missense_Mutation p.G37C 0.19 tolerated(0.21) benign(0.077) TCGA-05-4418-01 20 2846896 2846898 CGA ATT VPS16 Nonsense_Mutation p.YE770*L 0.08 TCGA-05-4418-01 20 31587901 31587901 T C SUN5 Missense_Mutation p.I107V 0.33 tolerated(1) benign(0.002) TCGA-05-4418-01 20 58322818 58322818 G C PHACTR3 Missense_Mutation p.E96Q 0.21 deleterious(0.01) possibly_damaging(0.719) TCGA-05-4418-01 20 61143804 61143804 G T C20orf166 5'Flank 0.22 TCGA-05-4418-01 20 61542643 61542643 C A DIDO1 Nonsense_Mutation p.E108* 0.16 TCGA-05-4418-01 20 62038665 62038665 G A KCNQ2 Missense_Mutation p.P651S 0.20 tolerated(0.53) possibly_damaging(0.472) TCGA-05-4418-01 21 28296423 28296423 A T ADAMTS5 Silent p.P914P 0.24 TCGA-05-4418-01 21 43161537 43161537 T C RIPK4 Missense_Mutation p.T606A 0.22 deleterious(0.04) possibly_damaging(0.764) TCGA-05-4418-01 22 43936185 43936185 T G EFCAB6 Missense_Mutation p.Y1234S 0.30 deleterious(0) probably_damaging(0.93) TCGA-05-4418-01 22 47058939 47058939 C T GRAMD4 Missense_Mutation p.R157C 0.41 deleterious(0) possibly_damaging(0.677) TCGA-05-4418-01 2 109399221 109399221 G T RANBP2 Missense_Mutation p.R3091L 0.23 tolerated(0.06) benign(0.066) TCGA-05-4418-01 2 111556667 111556667 G A ACOXL Missense_Mutation p.M179I 0.34 tolerated(0.09) benign(0.031) TCGA-05-4418-01 2 128389269 128389269 G T MYO7B Silent p.P1704P 0.11 TCGA-05-4418-01 2 142004803 142004803 G A LRP1B Missense_Mutation p.A195V 0.22 possibly_damaging(0.483) TCGA-05-4418-01 2 1667444 1667444 G A PXDN Silent p.Y500Y 0.08 TCGA-05-4418-01 2 170871812 170871812 G T UBR3 Missense_Mutation p.L1463F 0.25 deleterious(0.01) probably_damaging(0.93) TCGA-05-4418-01 2 173340413 173340413 G A ITGA6 Silent p.Q423Q 0.29 TCGA-05-4418-01 2 179421984 179421984 A T TTN Silent p.A29335A 0.27 TCGA-05-4418-01 2 207631989 207631989 T C FASTKD2 Missense_Mutation p.I191T 0.28 tolerated(0.2) possibly_damaging(0.629) TCGA-05-4418-01 2 21230206 21230206 C G APOB Missense_Mutation p.K3178N 0.28 probably_damaging(0.989) TCGA-05-4418-01 2 21246397 21246397 G T APOB Missense_Mutation p.N868K 0.24 benign(0.017) TCGA-05-4418-01 2 21260849 21260849 G T APOB Missense_Mutation p.A173D 0.21 benign(0.001) TCGA-05-4418-01 2 219295487 219295487 G T VIL1 Missense_Mutation p.V330L 0.19 deleterious(0.03) benign(0.337) TCGA-05-4418-01 2 233398943 233398943 C A CHRND Missense_Mutation p.P421Q 0.28 tolerated(0.29) probably_damaging(0.948) TCGA-05-4418-01 2 242194509 242194509 T - HDLBP Frame_Shift_Del p.K382Rfs*43 0.28 TCGA-05-4418-01 2 26691312 26691312 C A OTOF Missense_Mutation p.D1352Y 0.20 deleterious(0.02) possibly_damaging(0.886) TCGA-05-4418-01 2 27731038 27731038 C A GCKR Missense_Mutation p.P448T 0.17 tolerated(0.37) benign(0.001) TCGA-05-4418-01 2 27731039 27731039 C A GCKR Missense_Mutation p.P448H 0.18 tolerated(0.19) benign(0.296) TCGA-05-4418-01 2 32289089 32289089 G T SPAST Silent p.L63L 0.21 TCGA-05-4418-01 2 37474741 37474742 - A NDUFAF7 Frame_Shift_Ins p.N362Kfs*5 0.31 TCGA-05-4418-01 2 44051409 44051409 A G ABCG5 Missense_Mutation p.F356S 0.22 tolerated(0.07) probably_damaging(0.964) TCGA-05-4418-01 2 48027856 48027856 T C MSH6 Missense_Mutation p.W912R 0.29 deleterious(0) probably_damaging(0.999) TCGA-05-4418-01 2 69204898 69204898 T A GKN1 Missense_Mutation p.Y80N 0.35 deleterious(0) probably_damaging(0.999) TCGA-05-4418-01 2 85924772 85924772 G A GNLY Silent p.E133E 0.33 TCGA-05-4418-01 3 108634993 108634993 C G GUCA1C Missense_Mutation p.K141N 0.22 deleterious(0.04) possibly_damaging(0.555) TCGA-05-4418-01 3 11060301 11060301 G C SLC6A1 Missense_Mutation p.A130P 0.28 tolerated(0.1) probably_damaging(0.932) TCGA-05-4418-01 3 132218040 132218040 C A DNAJC13 Missense_Mutation p.D1409E 0.22 tolerated(0.75) benign(0.002) TCGA-05-4418-01 3 154884701 154884701 C A MME Silent p.A557A 0.20 TCGA-05-4418-01 3 185363402 185363402 G A IGF2BP2 Missense_Mutation p.R573C 0.09 deleterious(0.01) probably_damaging(0.977) TCGA-05-4418-01 3 32860298 32860298 G T TRIM71 Silent p.P242P 0.29 TCGA-05-4418-01 3 424293 424293 G T CHL1 Silent p.V705V 0.27 TCGA-05-4418-01 3 42906917 42906917 C T ACKR2 Missense_Mutation p.S308F 0.16 deleterious(0.01) possibly_damaging(0.663) TCGA-05-4418-01 3 44916184 44916184 C T TGM4 Missense_Mutation p.S5L 0.17 tolerated(0.29) benign(0.012) TCGA-05-4418-01 3 46758935 46758935 G T PRSS50 Missense_Mutation p.P100Q 0.25 tolerated(0.59) benign(0.004) TCGA-05-4418-01 3 47852151 47852151 C T DHX30 5'UTR 0.15 TCGA-05-4418-01 3 49165960 49165960 G C LAMB2 Missense_Mutation p.A650G 0.18 deleterious(0.04) benign(0.097) TCGA-05-4418-01 3 49165961 49165961 C A LAMB2 Missense_Mutation p.A650S 0.18 tolerated(0.37) benign(0.008) TCGA-05-4418-01 3 50256083 50256083 G T SLC38A3 RNA 0.15 TCGA-05-4418-01 3 51431352 51431353 - G RBM15B Frame_Shift_Ins p.S844Vfs*121 0.32 TCGA-05-4418-01 3 51743114 51743114 C T GRM2 Missense_Mutation p.P39S 0.29 deleterious(0) probably_damaging(1) TCGA-05-4418-01 3 7620718 7620718 T A GRM7 Missense_Mutation p.L709I 0.09 tolerated(0.07) probably_damaging(0.996) TCGA-05-4418-01 3 8667996 8667996 C A SSUH2 Missense_Mutation p.C229F 0.28 deleterious(0) probably_damaging(0.994) TCGA-05-4418-01 4 110454835 110454836 - A SEC24B Frame_Shift_Ins p.M1196Nfs*23 0.14 TCGA-05-4418-01 4 119745843 119745843 A G SEC24D Silent p.G60G 0.24 TCGA-05-4418-01 4 122853479 122853479 G T TRPC3 Missense_Mutation p.L312I 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-05-4418-01 4 128814717 128814717 G A PLK4 Missense_Mutation p.R791K 0.24 tolerated(1) benign(0) TCGA-05-4418-01 4 155278377 155278377 T G DCHS2 Missense_Mutation p.H265P 0.25 tolerated(0.27) benign(0.002) TCGA-05-4418-01 4 155375 155375 A T ZNF718 RNA 0.18 TCGA-05-4418-01 4 162376242 162376242 C A FSTL5 Silent p.T585T 0.21 TCGA-05-4418-01 4 183959141 183959141 G A FAM92A1P2 RNA 0.29 TCGA-05-4418-01 4 2242588 2242591 CAGT - HAUS3 Frame_Shift_Del p.D28Gfs*12 0.23 TCGA-05-4418-01 4 48106930 48106930 T C TXK Silent p.L163L 0.20 TCGA-05-4418-01 4 514917 514919 AGC - PIGG In_Frame_Del p.K396_H397delinsN 0.26 TCGA-05-4418-01 4 57179457 57179457 C T KIAA1211 Missense_Mutation p.A150V 0.29 deleterious(0.04) probably_damaging(0.995) TCGA-05-4418-01 4 71390668 71390668 T G AMTN Missense_Mutation p.L95R 0.30 deleterious(0) probably_damaging(0.999) TCGA-05-4418-01 4 75065547 75065547 C T MTHFD2L Missense_Mutation p.A163V 0.06 tolerated(0.19) benign(0.212) TCGA-05-4418-01 4 79522696 79522696 G A ANXA3 Missense_Mutation p.A255T 0.38 deleterious(0) probably_damaging(0.957) TCGA-05-4418-01 4 83674509 83674509 C T SCD5 Intron 0.17 TCGA-05-4418-01 4 89574037 89574038 - G HERC3 Frame_Shift_Ins p.N164Efs*55 0.19 TCGA-05-4418-01 5 101748746 101748746 A T SLCO6A1 Missense_Mutation p.F525Y 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-05-4418-01 5 131308464 131308464 T C ACSL6 Missense_Mutation p.I431V 0.30 tolerated(0.58) benign(0.007) TCGA-05-4418-01 5 135188390 135188390 C A SLC25A48 Missense_Mutation p.R101S 0.19 tolerated(0.99) benign(0.198) TCGA-05-4418-01 5 137089549 137089549 G A HNRNPA0 Silent p.P69P 0.22 TCGA-05-4418-01 5 140207895 140207895 C A PCDHA6 Missense_Mutation p.D73E 0.26 tolerated_low_confidence(0.07) benign(0.138) TCGA-05-4418-01 5 140255747 140255747 A G PCDHA12 Missense_Mutation p.I230M 0.35 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-05-4418-01 5 140502904 140502904 G T PCDHB4 Missense_Mutation p.D442Y 0.18 deleterious(0.01) possibly_damaging(0.859) TCGA-05-4418-01 5 140517152 140517152 G A PCDHB5 Silent p.L712L 0.20 TCGA-05-4418-01 5 140553013 140553013 G T PCDHB7 Silent p.V199V 0.24 TCGA-05-4418-01 5 140736243 140736243 C A PCDHGA4 Silent p.A492A 0.19 TCGA-05-4418-01 5 140784669 140784669 G A PCDHGA9 Missense_Mutation p.R717K 0.16 deleterious_low_confidence(0.05) benign(0.135) TCGA-05-4418-01 5 141335023 141335023 C T PCDH12 Silent p.V798V 0.38 TCGA-05-4418-01 5 150407000 150407000 C G GPX3 Missense_Mutation p.R123G 0.22 deleterious(0) probably_damaging(1) TCGA-05-4418-01 5 157078599 157078599 G A SOX30 Missense_Mutation p.S163F 0.43 deleterious_low_confidence(0) possibly_damaging(0.828) TCGA-05-4418-01 5 157181018 157181018 A G LSM11 Missense_Mutation p.T199A 0.28 tolerated(0.25) benign(0.015) TCGA-05-4418-01 5 15936997 15936997 G T FBXL7 Missense_Mutation p.G393V 0.24 deleterious(0.01) probably_damaging(1) TCGA-05-4418-01 5 161324188 161324188 T C GABRA1 Silent p.P377P 0.24 TCGA-05-4418-01 5 17275921 17275921 C T BASP1 Missense_Mutation p.A199V 0.16 tolerated(0.17) probably_damaging(0.989) TCGA-05-4418-01 5 176308305 176308305 C G HK3 Silent p.P875P 0.24 TCGA-05-4418-01 5 179666965 179666965 G A MAPK9 Missense_Mutation p.A340V 0.26 tolerated(0.18) benign(0.001) TCGA-05-4418-01 5 180001285 180001285 A T CNOT6 3'UTR 0.30 TCGA-05-4418-01 5 31323229 31323229 C A CDH6 Silent p.A729A 0.25 TCGA-05-4418-01 5 35700681 35700681 C T SPEF2 Missense_Mutation p.T742I 0.25 tolerated(0.05) benign(0.307) TCGA-05-4418-01 5 35968187 35968187 G C UGT3A1 Missense_Mutation p.P82R 0.18 deleterious(0.01) benign(0.443) TCGA-05-4418-01 5 43656049 43656049 A G NNT Missense_Mutation p.I723V 0.31 tolerated(0.12) benign(0.02) TCGA-05-4418-01 5 54618257 54618257 G T SKIV2L2 Missense_Mutation p.K79N 0.21 tolerated(0.08) benign(0.199) TCGA-05-4418-01 5 56527069 56527069 A T GPBP1 Missense_Mutation p.H118L 0.29 tolerated(0.06) possibly_damaging(0.653) TCGA-05-4418-01 5 75505590 75505590 C A SV2C Nonsense_Mutation p.S264* 0.27 TCGA-05-4418-01 5 80376481 80376481 A G RASGRF2 Missense_Mutation p.Y345C 0.21 deleterious(0) probably_damaging(0.988) TCGA-05-4418-01 5 80503114 80503114 T C RASGRF2 Missense_Mutation p.L1006P 0.06 deleterious(0) probably_damaging(0.962) TCGA-05-4418-01 5 81608494 81608494 A G ATP6AP1L Missense_Mutation p.I66V 0.28 tolerated(0.17) benign(0.046) TCGA-05-4418-01 6 10556946 10556946 A G GCNT2 Intron 0.49 TCGA-05-4418-01 6 108985039 108985039 G A FOXO3 Missense_Mutation p.E335K 0.38 deleterious(0.01) benign(0.066) TCGA-05-4418-01 6 111214177 111214177 A T AMD1 Missense_Mutation p.N258I 0.49 deleterious(0) probably_damaging(1) TCGA-05-4418-01 6 117121759 117121759 G T GPRC6A Missense_Mutation p.F512L 0.51 tolerated(0.3) benign(0.002) TCGA-05-4418-01 6 128134393 128134393 C A THEMIS Missense_Mutation p.D465Y 0.37 deleterious(0) probably_damaging(1) TCGA-05-4418-01 6 136888870 136888870 G A MAP3K5 Silent p.T1220T 0.31 TCGA-05-4418-01 6 97053871 97053871 T A FHL5 Missense_Mutation p.I143N 0.05 deleterious(0) probably_damaging(0.992) TCGA-05-4418-01 7 101267507 101267507 G T MYL10 Missense_Mutation p.A39D 0.32 deleterious(0) probably_damaging(0.951) TCGA-05-4418-01 7 105903983 105903983 G T NAMPT Missense_Mutation p.S275Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-05-4418-01 7 117417645 117417645 C A CTTNBP2 Missense_Mutation p.V900F 0.21 deleterious(0.03) benign(0.019) TCGA-05-4418-01 7 127638065 127638065 G C SND1 Intron 0.20 TCGA-05-4418-01 7 148709033 148709033 T A PDIA4 Missense_Mutation p.Q295L 0.24 tolerated(0.06) benign(0.035) TCGA-05-4418-01 7 149522402 149522402 G T SSPO RNA 0.17 TCGA-05-4418-01 7 154172027 154172027 A C DPP6 Missense_Mutation p.E121A 0.31 deleterious(0.01) possibly_damaging(0.899) TCGA-05-4418-01 7 156518480 156518480 C G LMBR1 Missense_Mutation p.A349P 0.15 tolerated(0.09) possibly_damaging(0.873) TCGA-05-4418-01 7 26248069 26248069 C T CBX3 Missense_Mutation p.A75V 0.19 tolerated(0.12) benign(0.092) TCGA-05-4418-01 7 41730009 41730009 G T INHBA Missense_Mutation p.R174S 0.25 deleterious(0) benign(0.21) TCGA-05-4418-01 7 5327485 5327485 G T SLC29A4 Missense_Mutation p.S13I 0.29 deleterious_low_confidence(0) benign(0.361) TCGA-05-4418-01 7 57188666 57188666 G T ZNF479 Silent p.T152T 0.16 TCGA-05-4418-01 7 5800722 5800722 T C RNF216 5'UTR 0.28 TCGA-05-4418-01 7 83610721 83610721 G C SEMA3A Missense_Mutation p.A523G 0.37 deleterious(0.04) possibly_damaging(0.737) TCGA-05-4418-01 8 100454673 100454673 G T VPS13B Silent p.L1085L 0.33 TCGA-05-4418-01 8 139164306 139164306 C G FAM135B Missense_Mutation p.K804N 0.22 tolerated(0.23) benign(0.034) TCGA-05-4418-01 8 139890410 139890410 G A COL22A1 Missense_Mutation p.R81C 0.31 unknown(0) TCGA-05-4418-01 8 144297309 144297309 C T GPIHBP1 Silent p.P157P 0.33 TCGA-05-4418-01 8 30999102 30999102 G C WRN Missense_Mutation p.A1042P 0.24 tolerated(0.12) benign(0.027) TCGA-05-4418-01 8 3889486 3889486 G A CSMD1 Missense_Mutation p.T184I 0.19 probably_damaging(0.999) TCGA-05-4418-01 8 41554022 41554022 G T ANK1 Missense_Mutation p.P981Q 0.29 deleterious(0) probably_damaging(0.954) TCGA-05-4418-01 8 53079434 53079434 G T ST18 Missense_Mutation p.H394Q 0.25 deleterious(0) probably_damaging(1) TCGA-05-4418-01 9 125239348 125239348 G T OR1J1 Missense_Mutation p.N286K 0.30 deleterious_low_confidence(0.01) benign(0.024) TCGA-05-4418-01 9 137704349 137704349 G C COL5A1 Splice_Site p.X1248_splice 0.43 TCGA-05-4418-01 9 19126429 19126429 C A PLIN2 5'UTR 0.29 TCGA-05-4418-01 9 69420407 69420407 C T ANKRD20A4 Silent p.L433L 0.05 TCGA-05-4418-01 9 84530750 84530750 C A SPATA31D5P RNA 0.33 TCGA-05-4418-01 9 94060310 94060310 C A AUH Missense_Mutation p.G185V 0.30 deleterious(0.02) probably_damaging(1) TCGA-05-4418-01 9 96860223 96860223 C T PTPDC1 Silent p.L457L 0.36 TCGA-05-4418-01 X 11162223 11162223 G T ARHGAP6 Missense_Mutation p.Q685K 0.44 tolerated(0.27) benign(0.165) TCGA-05-4418-01 X 11308583 11308583 G A ARHGAP6 Intron 0.55 TCGA-05-4418-01 X 135592243 135592243 G A HTATSF1 Silent p.R309R 0.15 TCGA-05-4418-01 X 14550471 14550471 C G GLRA2 Missense_Mutation p.A60G 0.62 tolerated(0.11) possibly_damaging(0.868) TCGA-05-4418-01 X 148037652 148037652 G T AFF2 Nonsense_Mutation p.E693* 0.52 TCGA-05-4418-01 X 152710691 152710691 C A TREX2 Silent p.P66P 0.60 TCGA-05-4418-01 X 152826288 152826288 C T ATP2B3 Silent p.D998D 0.56 TCGA-05-4418-01 X 19650023 19650023 A G SH3KBP1 Silent p.L286L 0.56 TCGA-05-4418-01 X 35820818 35820818 G T MAGEB16 Missense_Mutation p.D169Y 0.54 deleterious(0.01) benign(0.286) TCGA-05-4418-01 X 47041247 47041247 G T RBM10 Nonsense_Mutation p.E559* 0.44 TCGA-05-4418-01 X 47046078 47046078 G T RBM10 3'UTR 0.54 TCGA-05-4418-01 X 72434120 72434120 C A NAP1L2 Missense_Mutation p.G70V 0.60 tolerated(0.25) benign(0.007) TCGA-05-4418-01 X 73065721 73065721 T G XIST RNA 0.51 TCGA-05-4418-01 X 9862711 9862711 G T SHROOM2 Missense_Mutation p.A255S 0.69 tolerated(0.47) benign(0.001) TCGA-05-4420-01 10 103560073 103560073 T C MGEA5 Missense_Mutation p.Y374C 0.29 deleterious(0) probably_damaging(0.999) TCGA-05-4420-01 10 119013909 119013909 T A SLC18A2 Intron 0.25 TCGA-05-4420-01 10 135140380 135140380 A G CALY Splice_Site p.X120_splice 0.21 TCGA-05-4420-01 10 15254716 15254716 C A FAM171A1 3'UTR 0.33 TCGA-05-4420-01 10 18254567 18254567 T C SLC39A12 Silent p.F233F 0.24 TCGA-05-4420-01 10 225956 225956 G A ZMYND11 Missense_Mutation p.A2T 0.63 tolerated(0.71) benign(0.1) TCGA-05-4420-01 10 25313947 25313947 C T THNSL1 Missense_Mutation p.H599Y 0.09 tolerated(0.76) benign(0.093) TCGA-05-4420-01 10 44052539 44052539 T C ZNF239 Missense_Mutation p.Q330R 0.32 tolerated(0.21) probably_damaging(0.998) TCGA-05-4420-01 10 48389941 48389941 G A RBP3 Silent p.L313L 0.28 TCGA-05-4420-01 10 60124575 60124575 T C UBE2D1 Silent p.N81N 0.55 TCGA-05-4420-01 10 70951419 70951419 A T SUPV3L1 Silent p.P250P 0.17 TCGA-05-4420-01 10 8115980 8115980 G T GATA3 Missense_Mutation p.M443I 0.11 tolerated(0.09) probably_damaging(0.981) TCGA-05-4420-01 10 87406923 87406923 T C GRID1 Intron 0.27 TCGA-05-4420-01 11 108043482 108043482 G A NPAT Silent p.I743I 0.36 TCGA-05-4420-01 11 120352136 120352136 C A ARHGEF12 Missense_Mutation p.P1469T 0.20 deleterious_low_confidence(0.01) benign(0.19) TCGA-05-4420-01 11 1213453 1213453 T A MUC5AC RNA 0.10 TCGA-05-4420-01 11 123847563 123847563 C A OR10S1 Missense_Mutation p.S279I 0.11 tolerated(0.07) possibly_damaging(0.643) TCGA-05-4420-01 11 128680825 128680825 C G FLI1 Missense_Mutation p.P434R 0.35 deleterious(0.01) possibly_damaging(0.526) TCGA-05-4420-01 11 132307139 132307139 C G OPCML Missense_Mutation p.R214P 0.36 deleterious(0) probably_damaging(0.986) TCGA-05-4420-01 11 133789866 133789866 T C IGSF9B Missense_Mutation p.T1252A 0.28 tolerated_low_confidence(0.13) benign(0.151) TCGA-05-4420-01 11 20648251 20648251 T A SLC6A5 Intron 0.34 TCGA-05-4420-01 11 26692557 26692557 C A SLC5A12 3'UTR 0.38 TCGA-05-4420-01 11 280839 280839 G C NLRP6 Missense_Mutation p.E369Q 0.31 tolerated(0.09) possibly_damaging(0.769) TCGA-05-4420-01 11 4703243 4703243 C A OR51E2 Silent p.R233R 0.24 TCGA-05-4420-01 11 50003265 50003265 C T OR4C12 Missense_Mutation p.R258H 0.14 deleterious_low_confidence(0.01) benign(0.141) TCGA-05-4420-01 11 500626 500626 G T RNH1 Silent p.R44R 0.14 TCGA-05-4420-01 11 533874 533874 T A HRAS Missense_Mutation p.Q61L 0.37 deleterious(0) possibly_damaging(0.476) TCGA-05-4420-01 11 55321872 55321872 G C OR4C15 Missense_Mutation p.K30N 0.36 deleterious_low_confidence(0) benign(0.052) TCGA-05-4420-01 11 55563657 55563657 A T OR5D14 Missense_Mutation p.E209V 0.33 deleterious(0.03) possibly_damaging(0.787) TCGA-05-4420-01 11 56043831 56043831 G T OR5T1 Missense_Mutation p.K239N 0.31 deleterious(0.03) benign(0.098) TCGA-05-4420-01 11 56143268 56143268 A C OR8U1 Missense_Mutation p.T57P 0.30 deleterious(0) probably_damaging(0.955) TCGA-05-4420-01 11 57068012 57068012 T A TNKS1BP1 3'UTR 0.31 TCGA-05-4420-01 11 57996185 57996185 T G OR10Q1 Missense_Mutation p.T55P 0.37 deleterious(0.03) possibly_damaging(0.714) TCGA-05-4420-01 11 60268654 60268654 C A MS4A12 Missense_Mutation p.S138Y 0.21 tolerated(0.29) possibly_damaging(0.786) TCGA-05-4420-01 11 67021866 67021866 C G KDM2A Missense_Mutation p.S1095C 0.13 deleterious(0) possibly_damaging(0.894) TCGA-05-4420-01 11 67058967 67058967 G C ANKRD13D Missense_Mutation p.E124D 0.17 deleterious(0.01) probably_damaging(0.925) TCGA-05-4420-01 11 68506070 68506070 T C MTL5 Intron 0.28 TCGA-05-4420-01 11 6891431 6891431 G T OR10A2 Missense_Mutation p.W149L 0.32 tolerated(0.21) probably_damaging(1) TCGA-05-4420-01 11 70263174 70263174 G T CTTN Missense_Mutation p.K171N 0.30 deleterious(0) possibly_damaging(0.816) TCGA-05-4420-01 11 72410139 72410139 A T ARAP1 Missense_Mutation p.F818I 0.14 deleterious(0) probably_damaging(0.996) TCGA-05-4420-01 11 72554622 72554622 A C FCHSD2 Intron 0.49 TCGA-05-4420-01 11 73638539 73638539 C T PAAF1 3'UTR 0.40 TCGA-05-4420-01 11 82938904 82938904 T C ANKRD42 Silent p.P273P 0.42 TCGA-05-4420-01 11 84028205 84028205 C A DLG2 Intron 0.18 TCGA-05-4420-01 11 94759362 94759362 C A KDM4E Missense_Mutation p.P214Q 0.44 deleterious(0) probably_damaging(0.996) TCGA-05-4420-01 12 10587093 10587093 G A KLRC2 Missense_Mutation p.T108M 0.11 deleterious(0.03) benign(0.375) TCGA-05-4420-01 12 113382446 113382446 G T OAS3 Missense_Mutation p.W209L 0.35 deleterious(0) probably_damaging(0.989) TCGA-05-4420-01 12 122369737 122369737 G T WDR66 Missense_Mutation p.C278F 0.44 deleterious(0) possibly_damaging(0.56) TCGA-05-4420-01 12 12870888 12870888 G C CDKN1B Missense_Mutation p.E39Q 0.37 deleterious(0.02) benign(0.33) TCGA-05-4420-01 12 130184930 130184930 G T TMEM132D Silent p.A131A 0.31 TCGA-05-4420-01 12 29423409 29423409 C A FAR2 Silent p.G9G 0.36 TCGA-05-4420-01 12 29423423 29423423 T C FAR2 Missense_Mutation p.L14P 0.45 deleterious(0) probably_damaging(0.999) TCGA-05-4420-01 12 29670472 29670472 A C TMTC1 Missense_Mutation p.L686W 0.32 deleterious(0) probably_damaging(0.999) TCGA-05-4420-01 12 31435625 31435625 C A FAM60A 3'UTR 0.27 TCGA-05-4420-01 12 31435626 31435626 C A FAM60A 3'UTR 0.27 TCGA-05-4420-01 12 43846183 43846183 C A ADAMTS20 Missense_Mutation p.C658F 0.35 deleterious(0) probably_damaging(0.991) TCGA-05-4420-01 12 48188624 48188624 C G HDAC7 Silent p.V459V 0.20 TCGA-05-4420-01 12 498227 498227 C G KDM5A Missense_Mutation p.A11P 0.41 tolerated(0.22) probably_damaging(0.954) TCGA-05-4420-01 12 50384012 50384012 T C RACGAP1 3'UTR 0.21 TCGA-05-4420-01 12 53038773 53038773 G C KRT2 3'UTR 0.33 TCGA-05-4420-01 12 53691907 53691907 C T PFDN5 Missense_Mutation p.L121F 0.37 tolerated(0.18) probably_damaging(0.993) TCGA-05-4420-01 12 54394171 54394171 G A HOXC9 Missense_Mutation p.A67T 0.12 tolerated(0.15) benign(0.222) TCGA-05-4420-01 12 66698906 66698906 A C HELB Missense_Mutation p.M195L 0.45 tolerated(0.29) benign(0.001) TCGA-05-4420-01 12 68549249 68549249 G T IFNG Missense_Mutation p.Q129K 0.28 deleterious(0) probably_damaging(0.986) TCGA-05-4420-01 12 71960644 71960644 C A LGR5 Nonsense_Mutation p.S341* 0.30 TCGA-05-4420-01 12 73056896 73056896 C G TRHDE Missense_Mutation p.T999S 0.10 tolerated(0.11) possibly_damaging(0.608) TCGA-05-4420-01 12 80707373 80707373 G T OTOGL Nonsense_Mutation p.E1181* 0.31 TCGA-05-4420-01 12 8074110 8074110 C A SLC2A3 Missense_Mutation p.A464S 0.26 tolerated(0.71) benign(0.201) TCGA-05-4420-01 12 8994049 8994049 C A A2ML1 Missense_Mutation p.Q389K 0.36 tolerated(0.53) benign(0.011) TCGA-05-4420-01 13 20346557 20346557 C T PSPC1 Missense_Mutation p.V167I 0.41 deleterious(0.05) possibly_damaging(0.506) TCGA-05-4420-01 13 27829569 27829569 T C RPL21 Intron 0.21 TCGA-05-4420-01 13 27830439 27830439 G T RPL21 Nonsense_Mutation p.E121* 0.35 TCGA-05-4420-01 13 38138664 38138664 T A POSTN Missense_Mutation p.K822I 0.40 tolerated_low_confidence(0.11) possibly_damaging(0.474) TCGA-05-4420-01 13 53241004 53241004 C T SUGT1 Missense_Mutation p.L225F 0.34 tolerated(0.06) benign(0.029) TCGA-05-4420-01 13 67802047 67802047 C A PCDH9 Missense_Mutation p.V176L 0.40 deleterious(0.01) possibly_damaging(0.734) TCGA-05-4420-01 13 72147097 72147097 T A DACH1 Missense_Mutation p.S394C 0.25 probably_damaging(0.917) TCGA-05-4420-01 14 19563597 19563597 T A POTEG Intron 0.12 TCGA-05-4420-01 14 21109399 21109399 C A OR6S1 Missense_Mutation p.W151L 0.32 deleterious(0) probably_damaging(0.999) TCGA-05-4420-01 14 22471872 22471872 C A TRAV18 Missense_Mutation p.Q99K 0.17 deleterious(0.01) possibly_damaging(0.782) TCGA-05-4420-01 14 39870751 39870751 T A FBXO33 Missense_Mutation p.H342L 0.40 deleterious(0) possibly_damaging(0.637) TCGA-05-4420-01 14 47426714 47426714 A T MDGA2 Nonsense_Mutation p.L651* 0.19 TCGA-05-4420-01 14 50053060 50053060 C T RPS29 Missense_Mutation p.G2D 0.48 deleterious(0) probably_damaging(0.979) TCGA-05-4420-01 14 52534674 52534674 G A NID2 Missense_Mutation p.R146C 0.24 tolerated(0.08) possibly_damaging(0.586) TCGA-05-4420-01 14 55493428 55493428 C A WDHD1 Splice_Site p.X26_splice 0.16 TCGA-05-4420-01 14 69256985 69256985 C T ZFP36L1 Silent p.G94G 0.49 TCGA-05-4420-01 14 78174335 78174335 C A ALKBH1 Missense_Mutation p.A5S 0.64 tolerated_low_confidence(0.05) benign(0.018) TCGA-05-4420-01 14 95108209 95108209 G A SERPINA13P RNA 0.23 TCGA-05-4420-01 15 101447433 101447433 T C ALDH1A3 Silent p.N447N 0.34 TCGA-05-4420-01 15 20490523 20490526 GTTG TTT CHEK2P2 RNA 0.23 TCGA-05-4420-01 15 45983411 45983411 G T SQRDL 3'UTR 0.44 TCGA-05-4420-01 15 45983413 45983413 G T SQRDL 3'UTR 0.40 TCGA-05-4420-01 15 48063502 48063502 G A SEMA6D Silent p.S914S 0.19 TCGA-05-4420-01 15 50769167 50769167 A G USP8 Missense_Mutation p.Q324R 0.27 tolerated(0.34) benign(0) TCGA-05-4420-01 15 54015097 54015097 C T WDR72 Silent p.A54A 0.16 TCGA-05-4420-01 15 63536975 63536975 A C RAB8B Missense_Mutation p.T49P 0.11 deleterious(0) probably_damaging(0.999) TCGA-05-4420-01 15 64966541 64966541 C T ZNF609 Silent p.D496D 0.42 TCGA-05-4420-01 15 81295659 81295659 G T MESDC1 Silent p.S349S 0.07 TCGA-05-4420-01 15 83350261 83350261 G T AP3B2 Silent p.P144P 0.13 TCGA-05-4420-01 15 85342390 85342390 G T ZNF592 Missense_Mutation p.R1029L 0.30 deleterious(0.04) probably_damaging(0.999) TCGA-05-4420-01 16 1797083 1797083 C T MAPK8IP3 Silent p.P266P 0.29 TCGA-05-4420-01 16 20410503 20410503 C A PDILT Silent p.L40L 0.53 TCGA-05-4420-01 16 27356218 27356218 G T IL4R Nonsense_Mutation p.G80* 0.50 TCGA-05-4420-01 16 29000895 29000895 G T LAT Missense_Mutation p.A217S 0.45 tolerated_low_confidence(0.07) possibly_damaging(0.599) TCGA-05-4420-01 16 29115346 29115346 C T CTB-134H23.3 RNA 0.09 TCGA-05-4420-01 16 30723216 30723216 G T SRCAP Missense_Mutation p.S518I 0.56 unknown(0) TCGA-05-4420-01 16 4408437 4408437 C A CORO7 Missense_Mutation p.E796D 0.53 deleterious(0.02) probably_damaging(0.998) TCGA-05-4420-01 16 58712724 58712724 G A SLC38A7 Silent p.Y115Y 0.52 TCGA-05-4420-01 16 71319391 71319391 C A CMTR2 Nonsense_Mutation p.E145* 0.65 TCGA-05-4420-01 17 16323552 16323552 G A TRPV2 Silent p.S108S 0.03 TCGA-05-4420-01 17 18087755 18087755 C T ALKBH5 Silent p.P66P 0.12 TCGA-05-4420-01 17 18133340 18133340 G T LLGL1 Missense_Mutation p.G56V 0.41 deleterious(0) probably_damaging(1) TCGA-05-4420-01 17 41004468 41004468 G T AOC3 Missense_Mutation p.A370S 0.25 tolerated(0.95) benign(0.109) TCGA-05-4420-01 17 46052626 46052626 A T CDK5RAP3 Nonsense_Mutation p.K146* 0.41 TCGA-05-4420-01 17 4842201 4842201 A T SLC25A11 Missense_Mutation p.F106L 0.41 tolerated(0.65) benign(0.006) TCGA-05-4420-01 17 5040419 5040419 A C USP6 Missense_Mutation p.K255Q 0.25 tolerated_low_confidence(0.06) benign(0.055) TCGA-05-4420-01 17 67302912 67302912 T A ABCA5 Missense_Mutation p.I248L 0.62 tolerated(1) benign(0.001) TCGA-05-4420-01 17 7134075 7134075 G A DVL2 Missense_Mutation p.P79L 0.25 deleterious(0.01) probably_damaging(1) TCGA-05-4420-01 17 74394977 74394977 G A UBE2O Missense_Mutation p.P575L 0.19 deleterious(0) probably_damaging(0.997) TCGA-05-4420-01 17 7577099 7577099 C A TP53 Missense_Mutation p.R280I 0.38 deleterious(0) probably_damaging(0.977) TCGA-05-4420-01 17 9083206 9083206 G T NTN1 Silent p.T430T 0.47 TCGA-05-4420-01 18 10468528 10468528 A C APCDD1 Missense_Mutation p.K41Q 0.06 deleterious(0.03) possibly_damaging(0.809) TCGA-05-4420-01 18 12955608 12955608 G T SEH1L Missense_Mutation p.W103C 0.23 deleterious(0) probably_damaging(0.998) TCGA-05-4420-01 18 25572694 25572694 A C CDH2 Missense_Mutation p.S423R 0.12 tolerated(0.09) possibly_damaging(0.499) TCGA-05-4420-01 18 39537617 39537617 C G PIK3C3 Missense_Mutation p.Q51E 0.41 tolerated(0.28) benign(0.013) TCGA-05-4420-01 18 42618463 42618463 C A SETBP1 Silent p.P1338P 0.37 TCGA-05-4420-01 18 43319551 43319551 C T SLC14A1 Silent p.S346S 0.32 TCGA-05-4420-01 18 43796093 43796093 C A C18orf25 Silent p.R83R 0.35 TCGA-05-4420-01 18 59483460 59483460 G A RNF152 Silent p.I79I 0.21 TCGA-05-4420-01 18 61459667 61459667 C A SERPINB7 Missense_Mutation p.S70Y 0.29 deleterious(0.02) possibly_damaging(0.786) TCGA-05-4420-01 18 63492010 63492010 C A CDH7 Silent p.G308G 0.12 TCGA-05-4420-01 18 6971968 6971968 C A LAMA1 Missense_Mutation p.V2263L 0.38 tolerated(0.1) benign(0.173) TCGA-05-4420-01 18 74583760 74583760 C T ZNF236 Nonsense_Mutation p.R214* 0.37 TCGA-05-4420-01 19 10102485 10102485 C A COL5A3 Missense_Mutation p.Q642H 0.74 unknown(0) TCGA-05-4420-01 19 13410132 13410132 G T CACNA1A Missense_Mutation p.S772Y 0.60 probably_damaging(0.919) TCGA-05-4420-01 19 14952563 14952563 G A OR7A10 Silent p.L43L 0.61 TCGA-05-4420-01 19 15726466 15726466 G T AD000091.2 5'Flank 0.58 TCGA-05-4420-01 19 19823805 19823805 T C ZNF14 Silent p.E95E 0.04 TCGA-05-4420-01 19 2438179 2438179 C T LMNB2 Silent p.R222R 0.13 TCGA-05-4420-01 19 2796159 2796159 G T THOP1 Silent p.G153G 0.70 TCGA-05-4420-01 19 33703293 33703293 C A SLC7A10 Silent p.V231V 0.23 TCGA-05-4420-01 19 35761990 35761990 A G USF2 Missense_Mutation p.I225V 0.20 tolerated(0.88) benign(0.002) TCGA-05-4420-01 19 3641807 3641807 C A PIP5K1C Missense_Mutation p.R561S 0.77 tolerated_low_confidence(0.12) benign(0.437) TCGA-05-4420-01 19 41510205 41510205 T A CYP2B6 Missense_Mutation p.V113E 0.27 deleterious(0.02) probably_damaging(0.924) TCGA-05-4420-01 19 41600880 41600880 C T CYP2A13 Missense_Mutation p.P393L 0.26 deleterious(0.01) probably_damaging(1) TCGA-05-4420-01 19 43228127 43228127 A G PSG3 3'UTR 0.24 TCGA-05-4420-01 19 4552480 4552480 C A SEMA6B Missense_Mutation p.G315W 0.50 deleterious(0) probably_damaging(0.999) TCGA-05-4420-01 19 52519539 52519539 T C ZNF614 Missense_Mutation p.T438A 0.32 tolerated(0.52) probably_damaging(0.93) TCGA-05-4420-01 19 53484168 53484168 C A ZNF702P RNA 0.38 TCGA-05-4420-01 19 53669109 53669109 C A ZNF665 Missense_Mutation p.G212C 0.32 deleterious(0.01) probably_damaging(0.99) TCGA-05-4420-01 19 55377868 55377868 G T KIR3DL2 Silent p.V383V 0.25 TCGA-05-4420-01 19 55666160 55666160 C A TNNI3 Silent p.V107V 0.29 TCGA-05-4420-01 19 58058519 58058519 G A ZNF550 Missense_Mutation p.H324Y 0.27 deleterious(0) probably_damaging(0.988) TCGA-05-4420-01 19 8841574 8841574 C T OR2Z1 Silent p.L62L 0.80 TCGA-05-4420-01 19 9067228 9067228 C A MUC16 Missense_Mutation p.G6740C 0.76 unknown(0) TCGA-05-4420-01 19 9073450 9073450 G T MUC16 Missense_Mutation p.L4666I 0.07 unknown(0) TCGA-05-4420-01 1 10690005 10690005 G A PEX14 Silent p.R365R 0.23 TCGA-05-4420-01 1 111060705 111060705 C T KCNA10 Silent p.L235L 0.38 TCGA-05-4420-01 1 115829306 115829306 C A NGF Missense_Mutation p.W37C 0.33 tolerated(0.23) possibly_damaging(0.847) TCGA-05-4420-01 1 118527328 118527328 A C SPAG17 Missense_Mutation p.L1916W 0.16 deleterious(0) benign(0.332) TCGA-05-4420-01 1 118609425 118609425 C T SPAG17 Missense_Mutation p.R828K 0.24 tolerated(0.94) benign(0.001) TCGA-05-4420-01 1 12836257 12836257 C T PRAMEF12 Missense_Mutation p.L287F 0.10 deleterious(0.03) probably_damaging(0.986) TCGA-05-4420-01 1 12939691 12939691 C T PRAMEF4 Missense_Mutation p.A371T 0.17 tolerated(0.14) benign(0.007) TCGA-05-4420-01 1 152186144 152186144 C T HRNR Missense_Mutation p.S2654N 0.18 unknown(0) TCGA-05-4420-01 1 152275261 152275286 TTATTAATATACGTTGCATAATACCT - FLG Frame_Shift_Del p.R4026Gfs*9 0.30 TCGA-05-4420-01 1 158596753 158596753 T A SPTA1 Silent p.I1903I 0.22 TCGA-05-4420-01 1 159283979 159283979 G T OR10J3 Silent p.A157A 0.49 TCGA-05-4420-01 1 159283980 159283980 G T OR10J3 Missense_Mutation p.A157D 0.50 deleterious(0) probably_damaging(0.995) TCGA-05-4420-01 1 16464843 16464843 C T EPHA2 Silent p.E302E 0.15 TCGA-05-4420-01 1 176918355 176918355 C A ASTN1 Missense_Mutation p.D674Y 0.42 deleterious(0) probably_damaging(0.966) TCGA-05-4420-01 1 21071463 21071463 T A HP1BP3 Nonsense_Mutation p.K497* 0.18 TCGA-05-4420-01 1 238090507 238090507 C A RP11-193H5.1 RNA 0.25 TCGA-05-4420-01 1 240072434 240072434 C A CHRM3 Nonsense_Mutation p.C561* 0.32 TCGA-05-4420-01 1 247695135 247695135 A T OR2C3 Missense_Mutation p.L227M 0.17 tolerated(0.08) benign(0.109) TCGA-05-4420-01 1 29601961 29601961 G T PTPRU Missense_Mutation p.E382D 0.54 tolerated(0.64) possibly_damaging(0.814) TCGA-05-4420-01 1 32557579 32557579 C A TMEM39B Nonsense_Mutation p.Y298* 0.31 TCGA-05-4420-01 1 33985220 33985220 C A CSMD2 Silent p.R3454R 0.15 TCGA-05-4420-01 1 35365726 35365726 G A DLGAP3 Missense_Mutation p.A419V 0.22 tolerated(0.63) benign(0.136) TCGA-05-4420-01 1 39878353 39878353 C G KIAA0754 Missense_Mutation p.L670V 0.53 possibly_damaging(0.567) TCGA-05-4420-01 1 40627278 40627278 A T RLF Silent p.S69S 0.36 TCGA-05-4420-01 1 41236556 41236556 A T NFYC 3'UTR 0.61 TCGA-05-4420-01 1 42619102 42619102 G T GUCA2B 5'UTR 0.61 TCGA-05-4420-01 1 47282729 47282729 G T CYP4B1 Silent p.L361L 0.13 TCGA-05-4420-01 1 47282730 47282730 G T CYP4B1 Missense_Mutation p.G362C 0.14 deleterious(0.01) possibly_damaging(0.889) TCGA-05-4420-01 1 55119167 55119167 G T MROH7 Missense_Mutation p.G190C 0.63 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-05-4420-01 1 57489264 57489264 G C DAB1 Missense_Mutation p.L279V 0.39 tolerated(0.51) benign(0.004) TCGA-05-4420-01 1 67442326 67442326 A - MIER1 Frame_Shift_Del p.K385Nfs*25 0.15 TCGA-05-4420-01 1 78340618 78340618 C A FAM73A Missense_Mutation p.Q590K 0.43 tolerated(0.22) benign(0.016) TCGA-05-4420-01 1 89735060 89735060 C A GBP5 Missense_Mutation p.G60V 0.42 deleterious(0) probably_damaging(0.964) TCGA-05-4420-01 1 935138 935138 G C HES4 Silent p.R72R 0.23 TCGA-05-4420-01 1 9658630 9658630 C T TMEM201 Silent p.L185L 0.28 TCGA-05-4420-01 20 30436639 30436639 C T FOXS1 5'Flank 0.14 TCGA-05-4420-01 20 33703271 33703271 C A EDEM2 Missense_Mutation p.A568S 0.39 tolerated_low_confidence(0.72) benign(0.003) TCGA-05-4420-01 20 33711807 33711807 T A EDEM2 Missense_Mutation p.R334W 0.41 deleterious(0) probably_damaging(0.996) TCGA-05-4420-01 20 44639923 44639923 C A MMP9 Missense_Mutation p.T264N 0.40 tolerated(0.31) benign(0.002) TCGA-05-4420-01 20 58514323 58514323 G A PPP1R3D Missense_Mutation p.R222W 0.11 tolerated(0.18) probably_damaging(0.964) TCGA-05-4420-01 20 62192981 62192981 C T HELZ2 Missense_Mutation p.R2270Q 0.32 tolerated(0.19) benign(0.159) TCGA-05-4420-01 20 9510440 9510440 C A LAMP5 Missense_Mutation p.D272E 0.48 deleterious(0.01) possibly_damaging(0.76) TCGA-05-4420-01 20 9520105 9520105 C A PAK7 3'UTR 0.48 TCGA-05-4420-01 21 41648050 41648050 C T DSCAM Missense_Mutation p.S777N 0.23 deleterious(0) possibly_damaging(0.799) TCGA-05-4420-01 21 43505485 43505485 C G UMODL1 Missense_Mutation p.P189R 0.19 deleterious(0) possibly_damaging(0.904) TCGA-05-4420-01 22 17072655 17072655 A G CCT8L2 Silent p.S262S 0.05 TCGA-05-4420-01 22 21384144 21384144 G C SLC7A4 Silent p.G493G 0.39 TCGA-05-4420-01 22 27021578 27021578 G T CRYBA4 Missense_Mutation p.A98S 0.15 tolerated(0.42) benign(0.005) TCGA-05-4420-01 22 40417816 40417816 C A FAM83F Silent p.P434P 0.34 TCGA-05-4420-01 22 44553945 44553945 G A PARVB Silent p.P342P 0.29 TCGA-05-4420-01 2 11273671 11273671 C T C2orf50 Silent p.L71L 0.19 TCGA-05-4420-01 2 125367481 125367481 G T CNTNAP5 Silent p.V619V 0.05 TCGA-05-4420-01 2 132021859 132021859 A T POTEE Missense_Mutation p.D944V 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-05-4420-01 2 133721313 133721313 C A NCKAP5 Nonsense_Mutation p.E187* 0.42 TCGA-05-4420-01 2 1497723 1497723 G C TPO Missense_Mutation p.A640P 0.10 deleterious(0.02) probably_damaging(0.936) TCGA-05-4420-01 2 160663639 160663639 C A LY75-CD302 Missense_Mutation p.S1612I 0.44 tolerated(0.16) benign(0.045) TCGA-05-4420-01 2 1652348 1652348 C A PXDN Silent p.A1068A 0.10 TCGA-05-4420-01 2 165364995 165364995 C T GRB14 Silent p.T331T 0.14 TCGA-05-4420-01 2 168107680 168107680 G T XIRP2 Nonsense_Mutation p.E3260* 0.24 TCGA-05-4420-01 2 170101331 170101331 C A LRP2 Missense_Mutation p.C1101F 0.25 probably_damaging(1) TCGA-05-4420-01 2 179616220 179616220 C A TTN Intron 0.19 TCGA-05-4420-01 2 189914102 189914102 T A COL5A2 Missense_Mutation p.N1040Y 0.57 unknown(0) TCGA-05-4420-01 2 196578275 196578275 C T SLC39A10 Missense_Mutation p.A565V 0.05 tolerated(0.08) benign(0.446) TCGA-05-4420-01 2 196834820 196834820 T A DNAH7 Splice_Site p.X687_splice 0.48 TCGA-05-4420-01 2 200213530 200213530 G T SATB2 Missense_Mutation p.S356Y 0.21 deleterious(0.01) probably_damaging(0.979) TCGA-05-4420-01 2 210561775 210561775 G T MAP2 Missense_Mutation p.A1508S 0.54 tolerated(0.06) benign(0.325) TCGA-05-4420-01 2 214215278 214215278 A T SPAG16 Missense_Mutation p.E224V 0.39 deleterious(0) possibly_damaging(0.707) TCGA-05-4420-01 2 231264881 231264881 G T SP140L Missense_Mutation p.G413W 0.43 deleterious(0) probably_damaging(0.997) TCGA-05-4420-01 2 233244348 233244348 G A ALPP Silent p.T145T 0.18 TCGA-05-4420-01 2 241079494 241079494 C A OTOS Missense_Mutation p.V24L 0.42 tolerated(0.18) benign(0.004) TCGA-05-4420-01 2 241700155 241700155 G T KIF1A Missense_Mutation p.R791S 0.50 tolerated(0.06) benign(0.013) TCGA-05-4420-01 2 242757908 242757908 C A NEU4 Missense_Mutation p.P343H 0.44 deleterious(0.05) possibly_damaging(0.62) TCGA-05-4420-01 2 24920627 24920627 G T NCOA1 Missense_Mutation p.Q303H 0.27 tolerated(0.21) benign(0.116) TCGA-05-4420-01 2 31360856 31360856 C A GALNT14 Missense_Mutation p.V33L 0.16 tolerated_low_confidence(0.09) benign(0.006) TCGA-05-4420-01 2 31588955 31588955 C T XDH Silent p.L781L 0.11 TCGA-05-4420-01 2 39050219 39050219 G T DHX57 Silent p.G1069G 0.15 TCGA-05-4420-01 2 40656143 40656143 G T SLC8A1 Silent p.A426A 0.20 TCGA-05-4420-01 2 50724853 50724853 C A NRXN1 Splice_Site p.X873_splice 0.11 TCGA-05-4420-01 2 50765556 50765556 C A NRXN1 Missense_Mutation p.A700S 0.16 deleterious(0.01) probably_damaging(0.942) TCGA-05-4420-01 2 65299464 65299470 GAGCGCA - CEP68 Frame_Shift_Del p.R413Sfs*4 0.14 TCGA-05-4420-01 2 66796217 66796217 G A MEIS1 Missense_Mutation p.E384K 0.12 deleterious(0.01) benign(0.297) TCGA-05-4420-01 2 88484982 88484982 G T THNSL2 Missense_Mutation p.D405Y 0.27 deleterious(0) possibly_damaging(0.492) TCGA-05-4420-01 3 107097226 107097226 T G CCDC54 Missense_Mutation p.S264R 0.41 tolerated(0.25) benign(0.039) TCGA-05-4420-01 3 108557802 108557802 G T TRAT1 Missense_Mutation p.S47I 0.45 deleterious(0) benign(0.108) TCGA-05-4420-01 3 113563429 113563429 A G GRAMD1C Missense_Mutation p.E36G 0.24 deleterious_low_confidence(0) benign(0.018) TCGA-05-4420-01 3 119344001 119344001 A T PLA1A Missense_Mutation p.K348M 0.19 deleterious(0.02) benign(0.2) TCGA-05-4420-01 3 127337904 127337904 A G MCM2 Missense_Mutation p.H683R 0.45 deleterious(0) probably_damaging(1) TCGA-05-4420-01 3 137717810 137717810 G A CLDN18 Missense_Mutation p.D34N 0.14 deleterious(0.03) possibly_damaging(0.635) TCGA-05-4420-01 3 140285094 140285094 A G CLSTN2 Nonstop_Mutation p.*956Wext*14 0.50 TCGA-05-4420-01 3 142567166 142567166 G A PCOLCE2 Missense_Mutation p.A114V 0.27 tolerated(0.06) benign(0.151) TCGA-05-4420-01 3 147108911 147108911 A T ZIC4 Missense_Mutation p.C321S 0.47 deleterious(0) probably_damaging(0.917) TCGA-05-4420-01 3 155649598 155649598 A T GMPS Missense_Mutation p.K535N 0.37 tolerated(0.39) benign(0.005) TCGA-05-4420-01 3 16254188 16254188 G A GALNT15 Missense_Mutation p.R437K 0.47 tolerated(1) benign(0) TCGA-05-4420-01 3 167761282 167761282 G A GOLIM4 Silent p.D134D 0.16 TCGA-05-4420-01 3 178984520 178984520 T C KCNMB3 5'UTR 0.38 TCGA-05-4420-01 3 182870212 182870212 T A LAMP3 Missense_Mutation p.N280I 0.40 deleterious(0) possibly_damaging(0.451) TCGA-05-4420-01 3 183669353 183669353 C T ABCC5 Silent p.T940T 0.15 TCGA-05-4420-01 3 19575003 19575003 C T KCNH8 Silent p.S912S 0.51 TCGA-05-4420-01 3 197598238 197598238 G T LRCH3 Nonsense_Mutation p.G679* 0.18 TCGA-05-4420-01 3 42265231 42265231 G T TRAK1 3'UTR 0.41 TCGA-05-4420-01 3 44636480 44636480 G C ZNF660 Missense_Mutation p.Q265H 0.19 deleterious(0.03) possibly_damaging(0.551) TCGA-05-4420-01 3 46757060 46757060 G A PRSS50 Silent p.S145S 0.20 TCGA-05-4420-01 3 47305841 47305841 C G KIF9 Splice_Site p.X306_splice 0.25 TCGA-05-4420-01 3 49151718 49151718 C A USP19 Splice_Site p.X763_splice 0.22 TCGA-05-4420-01 3 49200414 49200414 G - CCDC71 Frame_Shift_Del p.R410Dfs*7 0.40 TCGA-05-4420-01 3 97167440 97167440 C A EPHA6 Missense_Mutation p.T587K 0.34 deleterious(0.02) possibly_damaging(0.72) TCGA-05-4420-01 3 9854722 9854722 A T TTLL3 Silent p.S191S 0.15 TCGA-05-4420-01 4 103722680 103722681 - A UBE2D3 Frame_Shift_Ins p.N81* 0.20 TCGA-05-4420-01 4 103870474 103870474 C A SLC9B1 Missense_Mutation p.G108W 0.08 deleterious(0) probably_damaging(1) TCGA-05-4420-01 4 138451033 138451033 C A PCDH18 Missense_Mutation p.R737M 0.37 tolerated(0.07) probably_damaging(0.993) TCGA-05-4420-01 4 153750861 153750861 G T ARFIP1 Nonsense_Mutation p.E26* 0.26 TCGA-05-4420-01 4 155161691 155161691 G A DCHS2 Nonsense_Mutation p.Q1998* 0.25 TCGA-05-4420-01 4 155226292 155226292 G T DCHS2 Silent p.T1329T 0.27 TCGA-05-4420-01 4 155226293 155226293 G T DCHS2 Missense_Mutation p.T1329N 0.27 tolerated(0.09) benign(0.126) TCGA-05-4420-01 4 170077704 170077704 C T SH3RF1 Missense_Mutation p.G174R 0.23 deleterious(0) probably_damaging(1) TCGA-05-4420-01 4 174312327 174312327 G T SCRG1 Missense_Mutation p.P80Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-05-4420-01 4 175899297 175899297 C A ADAM29 3'UTR 0.24 TCGA-05-4420-01 4 3432320 3432320 G T RGS12 Missense_Mutation p.R1251L 0.58 tolerated(0.34) benign(0.024) TCGA-05-4420-01 4 57377383 57377383 G T ARL9 5'UTR 0.45 TCGA-05-4420-01 4 57377384 57377384 G T ARL9 5'UTR 0.47 TCGA-05-4420-01 4 70804920 70804920 G A CSN1S1 Silent p.S90S 0.11 TCGA-05-4420-01 4 90169061 90169061 G T GPRIN3 Missense_Mutation p.S734Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-05-4420-01 5 101735314 101735314 A G SLCO6A1 Missense_Mutation p.S587P 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-05-4420-01 5 154393371 154393371 G T KIF4B 5'UTR 0.71 TCGA-05-4420-01 5 156920037 156920037 C A ADAM19 Missense_Mutation p.G618C 0.39 deleterious(0) probably_damaging(0.914) TCGA-05-4420-01 5 167545349 167545349 C T TENM2 Silent p.C622C 0.07 TCGA-05-4420-01 5 194952 194952 G A LRRC14B Silent p.L343L 0.30 TCGA-05-4420-01 5 32048790 32048790 G A PDZD2 Silent p.Q555Q 0.45 TCGA-05-4420-01 5 34043079 34043079 C A C1QTNF3 Missense_Mutation p.G51V 0.54 deleterious_low_confidence(0) benign(0.086) TCGA-05-4420-01 5 36152994 36152994 G C SKP2 Missense_Mutation p.E44Q 0.46 tolerated(0.07) probably_damaging(0.911) TCGA-05-4420-01 5 5235286 5235286 C A ADAMTS16 Nonsense_Mutation p.Y670* 0.33 TCGA-05-4420-01 5 68531237 68531237 A G CDK7 Missense_Mutation p.K28R 0.13 tolerated(0.17) possibly_damaging(0.573) TCGA-05-4420-01 5 70812006 70812006 C G BDP1 Missense_Mutation p.Q1590E 0.21 tolerated(0.12) benign(0.419) TCGA-05-4420-01 5 79029481 79029481 G T CMYA5 Silent p.P1631P 0.18 TCGA-05-4420-01 6 130762171 130762171 G T TMEM200A Missense_Mutation p.A202S 0.33 tolerated(0.1) benign(0.049) TCGA-05-4420-01 6 160176630 160176630 G T WTAP Missense_Mutation p.G393V 0.25 deleterious_low_confidence(0) possibly_damaging(0.531) TCGA-05-4420-01 6 25776840 25776840 C T SLC17A4 Silent p.A335A 0.38 TCGA-05-4420-01 6 25861926 25861926 C T SLC17A3 Missense_Mutation p.G184E 0.23 tolerated(0.08) possibly_damaging(0.857) TCGA-05-4420-01 6 29142178 29142178 G T OR2J2 Missense_Mutation p.V256F 0.28 deleterious(0.01) benign(0.272) TCGA-05-4420-01 6 30617664 30617664 C G C6orf136 Silent p.S315S 0.42 TCGA-05-4420-01 6 31079232 31079232 G T C6orf15 Missense_Mutation p.R302S 0.15 tolerated(0.08) benign(0.023) TCGA-05-4420-01 6 31477729 31477729 C G MICB 3'UTR 0.26 TCGA-05-4420-01 6 32190540 32190540 G T NOTCH4 Missense_Mutation p.P67T 0.35 deleterious(0.04) possibly_damaging(0.791) TCGA-05-4420-01 6 35210036 35210036 A G SCUBE3 Silent p.K491K 0.16 TCGA-05-4420-01 6 38976690 38976690 T C DNAH8 Missense_Mutation p.Y4222H 0.29 benign(0.179) TCGA-05-4420-01 6 47567080 47567080 G A CD2AP Missense_Mutation p.E440K 0.11 deleterious(0.03) probably_damaging(0.99) TCGA-05-4420-01 6 47976507 47976507 C G PTCHD4 Missense_Mutation p.C257S 0.36 deleterious(0.05) probably_damaging(0.985) TCGA-05-4420-01 6 49412454 49412454 C A MUT Missense_Mutation p.R525M 0.32 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-05-4420-01 6 49425722 49425722 G A MUT Silent p.G145G 0.34 TCGA-05-4420-01 6 52344532 52344532 G T EFHC1 Silent p.A529A 0.13 TCGA-05-4420-01 6 56328479 56328479 G C DST Missense_Mutation p.R4968G 0.32 probably_damaging(0.933) TCGA-05-4420-01 6 56507224 56507224 C T DST Missense_Mutation p.G82E 0.35 benign(0.087) TCGA-05-4420-01 6 57512590 57512590 C A PRIM2 3'UTR 0.07 TCGA-05-4420-01 6 69759195 69759195 G T BAI3 Missense_Mutation p.A764S 0.26 tolerated(0.08) benign(0.23) TCGA-05-4420-01 6 80383467 80383467 A C SH3BGRL2 Missense_Mutation p.Q61P 0.30 tolerated(0.32) possibly_damaging(0.88) TCGA-05-4420-01 6 90088977 90088977 G A RRAGD Missense_Mutation p.P242L 0.10 deleterious(0.01) possibly_damaging(0.864) TCGA-05-4420-01 7 100549831 100549831 A G MUC3A Missense_Mutation p.I138V 0.12 tolerated(0.36) unknown(0) TCGA-05-4420-01 7 107878195 107878195 C A NRCAM Splice_Site p.X42_splice 0.29 TCGA-05-4420-01 7 128478674 128478674 G T FLNC Missense_Mutation p.V410F 0.30 deleterious(0) probably_damaging(0.952) TCGA-05-4420-01 7 137269996 137269996 G T DGKI Missense_Mutation p.P508T 0.34 tolerated(0.1) benign(0.032) TCGA-05-4420-01 7 138954223 138954223 A G UBN2 Missense_Mutation p.K517R 0.16 tolerated(0.09) benign(0.015) TCGA-05-4420-01 7 140273808 140273808 G T DENND2A Missense_Mutation p.Q416K 0.43 tolerated(0.78) benign(0.012) TCGA-05-4420-01 7 141957559 141957559 C G PRSS58 5'UTR 0.08 TCGA-05-4420-01 7 142499625 142499625 C A TRBC2 Intron 0.15 TCGA-05-4420-01 7 142568375 142568375 A T EPHB6 Missense_Mutation p.Y965F 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-05-4420-01 7 142627208 142627208 C A TRPV5 Silent p.L98L 0.42 TCGA-05-4420-01 7 142988654 142988654 G T CASP2 Missense_Mutation p.M32I 0.34 deleterious(0) probably_damaging(0.998) TCGA-05-4420-01 7 143039535 143039535 G T CLCN1 Missense_Mutation p.G623W 0.13 deleterious(0) probably_damaging(0.945) TCGA-05-4420-01 7 143039586 143039586 G T CLCN1 Missense_Mutation p.V640F 0.35 deleterious(0) probably_damaging(0.998) TCGA-05-4420-01 7 143053910 143053910 G A FAM131B Silent p.Y272Y 0.15 TCGA-05-4420-01 7 143056061 143056061 G C FAM131B Missense_Mutation p.R109G 0.46 deleterious(0) possibly_damaging(0.712) TCGA-05-4420-01 7 143573331 143573331 A G FAM115A Missense_Mutation p.V124A 0.33 tolerated(0.1) possibly_damaging(0.467) TCGA-05-4420-01 7 21788230 21788230 A T DNAH11 Missense_Mutation p.Q2855L 0.36 benign(0.096) TCGA-05-4420-01 7 21789974 21789974 C A DNAH11 Missense_Mutation p.Q2985K 0.29 possibly_damaging(0.492) TCGA-05-4420-01 7 42007443 42007443 G C GLI3 Missense_Mutation p.L728V 0.08 tolerated(1) benign(0.015) TCGA-05-4420-01 7 4281522 4281522 C T SDK1 Silent p.T2076T 0.23 TCGA-05-4420-01 7 50444256 50444256 G A IKZF1 Silent p.Q62Q 0.16 TCGA-05-4420-01 7 57529498 57529498 C A ZNF716 Missense_Mutation p.A444D 0.43 deleterious(0.01) benign(0.284) TCGA-05-4420-01 7 6182611 6182611 C G USP42 Missense_Mutation p.Q282E 0.27 deleterious(0.03) probably_damaging(0.991) TCGA-05-4420-01 7 80276105 80276105 G T CD36 Missense_Mutation p.A17S 0.25 tolerated(0.05) probably_damaging(0.96) TCGA-05-4420-01 7 81346644 81346644 C G HGF Missense_Mutation p.E437Q 0.30 tolerated(0.22) benign(0.008) TCGA-05-4420-01 7 89856415 89856415 T A STEAP2 Missense_Mutation p.L208H 0.34 deleterious(0) probably_damaging(0.994) TCGA-05-4420-01 7 92098789 92098789 G T ERVW-1 Missense_Mutation p.Q303K 0.46 tolerated(0.71) benign(0.351) TCGA-05-4420-01 7 98254413 98254413 C A NPTX2 Missense_Mutation p.Q275K 0.14 deleterious(0.03) probably_damaging(1) TCGA-05-4420-01 7 98478714 98478714 C T TRRAP Intron 0.28 TCGA-05-4420-01 8 139263164 139263164 G T FAM135B Silent p.V154V 0.12 TCGA-05-4420-01 8 42213036 42213036 C T POLB Missense_Mutation p.L125F 0.40 deleterious(0.01) possibly_damaging(0.796) TCGA-05-4420-01 8 48309166 48309166 A T SPIDR Silent p.S252S 0.15 TCGA-05-4420-01 8 52320781 52320782 CG A PXDNL Frame_Shift_Del p.V1135Wfs*28 0.25 TCGA-05-4420-01 8 59412672 59412672 C A CYP7A1 5'UTR 0.21 TCGA-05-4420-01 8 61769148 61769148 G T CHD7 Nonsense_Mutation p.G2437* 0.60 TCGA-05-4420-01 8 61769149 61769149 G T CHD7 Missense_Mutation p.G2437V 0.61 probably_damaging(0.946) TCGA-05-4420-01 8 77776623 77776624 TG - ZFHX4 Frame_Shift_Del p.C3559Qfs*17 0.12 TCGA-05-4420-01 8 87111177 87111177 T G ATP6V0D2 5'UTR 0.04 TCGA-05-4420-01 8 91937876 91937876 G A NECAB1 Missense_Mutation p.S203N 0.50 tolerated(0.35) benign(0) TCGA-05-4420-01 8 97172982 97172982 C T GDF6 5'UTR 0.30 TCGA-05-4420-01 9 100839261 100839261 C T NANS Missense_Mutation p.T137I 0.17 deleterious(0.01) possibly_damaging(0.598) TCGA-05-4420-01 9 113261349 113261349 A T SVEP1 Missense_Mutation p.N551K 0.20 benign(0.01) TCGA-05-4420-01 9 116152888 116152888 C A ALAD Missense_Mutation p.A156S 0.17 tolerated(0.74) benign(0.114) TCGA-05-4420-01 9 116267776 116267776 C G RGS3 Missense_Mutation p.P318A 0.17 deleterious(0) probably_damaging(1) TCGA-05-4420-01 9 119188076 119188076 A G ASTN2 3'UTR 0.28 TCGA-05-4420-01 9 125437724 125437724 G A OR1L3 Missense_Mutation p.V106I 0.23 tolerated(0.25) benign(0.009) TCGA-05-4420-01 9 19086742 19086742 T A HAUS6 Missense_Mutation p.K230I 0.22 deleterious(0) probably_damaging(0.917) TCGA-05-4420-01 9 21216810 21216810 C A IFNA16 Missense_Mutation p.E165D 0.38 deleterious(0.01) probably_damaging(0.989) TCGA-05-4420-01 9 71002378 71002378 G A PGM5 Splice_Site p.X191_splice 0.18 TCGA-05-4420-01 9 71869204 71869204 G T TJP2 Nonsense_Mutation p.E1194* 0.21 TCGA-05-4420-01 9 91616344 91616344 T C S1PR3 Missense_Mutation p.F77L 0.25 tolerated(0.38) benign(0.405) TCGA-05-4420-01 9 99114336 99114336 C T SLC35D2 Missense_Mutation p.E135K 0.39 deleterious(0) probably_damaging(0.999) TCGA-05-4420-01 9 99711865 99711865 G A HIATL2 Missense_Mutation p.P123S 0.14 deleterious(0) probably_damaging(1) TCGA-05-4420-01 X 106845905 106845905 G C FRMPD3 Missense_Mutation p.D1579H 0.46 deleterious(0.02) probably_damaging(0.997) TCGA-05-4420-01 X 135430553 135430553 C A GPR112 Missense_Mutation p.S1563Y 0.73 deleterious(0) possibly_damaging(0.556) TCGA-05-4420-01 X 144904510 144904510 G C SLITRK2 Missense_Mutation p.R189S 0.38 deleterious(0) probably_damaging(1) TCGA-05-4420-01 X 144906366 144906366 G T SLITRK2 Missense_Mutation p.R808M 0.68 deleterious(0.03) possibly_damaging(0.702) TCGA-05-4420-01 X 147106432 147106432 G T FMR1NB Missense_Mutation p.G227V 0.70 tolerated(0.47) probably_damaging(0.979) TCGA-05-4420-01 X 149783137 149783137 G T MTM1 Nonsense_Mutation p.G103* 0.67 TCGA-05-4420-01 X 150891346 150891346 G A FATE1 3'UTR 0.43 TCGA-05-4420-01 X 150908126 150908126 G T CNGA2 Missense_Mutation p.R99L 0.74 deleterious(0.02) benign(0.131) TCGA-05-4420-01 X 151424261 151424261 G T GABRA3 Silent p.L180L 0.69 TCGA-05-4420-01 X 153069678 153069678 G A PDZD4 Silent p.T480T 0.80 TCGA-05-4420-01 X 18668587 18668587 G A CDKL5 Missense_Mutation p.R952Q 0.09 deleterious_low_confidence(0) benign(0.238) TCGA-05-4420-01 X 34961142 34961142 C A FAM47B Missense_Mutation p.P65H 0.77 tolerated(0.07) probably_damaging(0.999) TCGA-05-4420-01 X 53239923 53239923 C A KDM5C Missense_Mutation p.M506I 0.74 deleterious(0.02) probably_damaging(0.997) TCGA-05-4420-01 X 73066515 73066515 G T XIST RNA 0.72 TCGA-05-4420-01 Y 16941629 16941629 C T NLGN4Y Silent p.I277I 0.50 TCGA-05-4422-01 10 1089975 1089975 T A IDI1 Nonsense_Mutation p.K93* 0.05 TCGA-05-4422-01 10 70450634 70450634 C G TET1 Nonsense_Mutation p.S1825* 0.05 TCGA-05-4422-01 10 95113621 95113621 C G MYOF Missense_Mutation p.C1143S 0.41 deleterious(0) possibly_damaging(0.854) TCGA-05-4422-01 11 64535055 64535055 G A SF1 Missense_Mutation p.P569S 0.37 tolerated_low_confidence(0.07) possibly_damaging(0.803) TCGA-05-4422-01 12 62785065 62785065 G A USP15 Missense_Mutation p.E697K 0.33 tolerated(0.48) benign(0.009) TCGA-05-4422-01 14 105395177 105395177 C G PLD4 Missense_Mutation p.L126V 0.16 deleterious(0.01) probably_damaging(0.927) TCGA-05-4422-01 14 24798609 24798609 G A ADCY4 Missense_Mutation p.R450W 0.31 deleterious(0.04) benign(0) TCGA-05-4422-01 14 65264536 65264536 G C SPTB Missense_Mutation p.L365V 0.26 deleterious(0) probably_damaging(0.999) TCGA-05-4422-01 15 25429470 25429470 C G SNORD115-8 RNA 0.09 TCGA-05-4422-01 15 32460235 32460235 G A CHRNA7 Missense_Mutation p.R391Q 0.11 tolerated(0.24) benign(0.028) TCGA-05-4422-01 15 41194859 41194859 G T VPS18 Missense_Mutation p.D748Y 0.27 deleterious(0) probably_damaging(0.994) TCGA-05-4422-01 15 92459366 92459366 G A SLCO3A1 Silent p.L108L 0.25 TCGA-05-4422-01 16 23200956 23200956 G C SCNN1G Missense_Mutation p.M194I 0.22 tolerated(0.53) benign(0.11) TCGA-05-4422-01 16 30768826 30768826 G A C16orf93 Missense_Mutation p.P323S 0.25 tolerated(0.1) benign(0.023) TCGA-05-4422-01 16 71025246 71025246 G T HYDIN Missense_Mutation p.T1280K 0.30 benign(0.068) TCGA-05-4422-01 17 11696840 11696840 G T DNAH9 Silent p.V2694V 0.27 TCGA-05-4422-01 17 42254862 42254862 G A ASB16 Intron 0.62 TCGA-05-4422-01 19 30936284 30936284 G C ZNF536 Silent p.R605R 0.28 TCGA-05-4422-01 19 362332 362332 G A THEG Silent p.I336I 0.35 TCGA-05-4422-01 1 150529665 150529665 G A ADAMTSL4 Missense_Mutation p.R634H 0.22 deleterious(0.02) probably_damaging(0.98) TCGA-05-4422-01 1 153907304 153907306 TGT - DENND4B In_Frame_Del p.Q910del 0.60 TCGA-05-4422-01 1 183104244 183104244 G T LAMC1 Missense_Mutation p.G1356V 0.29 deleterious(0) possibly_damaging(0.851) TCGA-05-4422-01 1 237791246 237791246 G T RYR2 Silent p.L2102L 0.28 TCGA-05-4422-01 1 62739326 62739326 C T KANK4 Missense_Mutation p.E484K 0.44 tolerated(0.28) benign(0) TCGA-05-4422-01 20 58547105 58547105 C T CDH26 Missense_Mutation p.S107F 0.27 deleterious(0) probably_damaging(1) TCGA-05-4422-01 21 34927023 34927023 C A SON Missense_Mutation p.S1829Y 0.43 unknown(0) TCGA-05-4422-01 22 26351204 26351204 G A MYO18B Silent p.A2010A 0.25 TCGA-05-4422-01 22 50962600 50962600 C T SCO2 Missense_Mutation p.E81K 0.27 tolerated(0.05) benign(0.143) TCGA-05-4422-01 2 178098919 178098942 TCGCTGACTGAAGTCAAATACTTC - NFE2L2 In_Frame_Del p.E35_R42del 0.25 TCGA-05-4422-01 2 219132260 219132260 G A AAMP Silent p.F117F 0.28 TCGA-05-4422-01 2 50282123 50282123 G A NRXN1 Nonsense_Mutation p.R1300* 0.57 TCGA-05-4422-01 3 183773963 183773963 A T HTR3C Splice_Site p.X94_splice 0.46 TCGA-05-4422-01 3 32932170 32932170 G A TRIM71 Missense_Mutation p.D492N 0.32 deleterious(0.01) benign(0.352) TCGA-05-4422-01 3 41266113 41266113 C T CTNNB1 Missense_Mutation p.S37F 0.27 deleterious(0) probably_damaging(0.962) TCGA-05-4422-01 3 49038963 49038963 G A P4HTM Missense_Mutation p.E177K 0.06 tolerated(0.08) probably_damaging(0.917) TCGA-05-4422-01 3 50211518 50211518 G T SEMA3F Nonsense_Mutation p.E103* 0.29 TCGA-05-4422-01 4 187003653 187003653 A G TLR3 Silent p.L271L 0.37 TCGA-05-4422-01 4 24534645 24534649 AGTTG - DHX15 Frame_Shift_Del p.N647Hfs*2 0.17 TCGA-05-4422-01 5 149511607 149511607 T G PDGFRB Missense_Mutation p.H393P 0.23 tolerated(0.2) benign(0.251) TCGA-05-4422-01 5 154396899 154396899 C G KIF4B Silent p.V1160V 0.29 TCGA-05-4422-01 5 180662120 180662120 C T TRIM41 3'UTR 0.50 TCGA-05-4422-01 6 112671585 112671585 T A RFPL4B Missense_Mutation p.N225K 0.21 tolerated(0.09) benign(0.052) TCGA-05-4422-01 7 121717989 121717989 C T AASS Silent p.T855T 0.28 TCGA-05-4422-01 7 81332027 81332027 A G HGF Missense_Mutation p.M686T 0.27 deleterious(0) benign(0.403) TCGA-05-4422-01 7 99711918 99711918 G C TAF6 Intron 0.12 TCGA-05-4422-01 8 125464156 125464156 G T TRMT12 Nonsense_Mutation p.G330* 0.10 TCGA-05-4422-01 8 125464490 125464490 G C TRMT12 Missense_Mutation p.C441S 0.09 deleterious(0) probably_damaging(0.994) TCGA-05-4422-01 8 133051064 133051064 C T OC90 Missense_Mutation p.E201K 0.29 tolerated(1) benign(0.004) TCGA-05-4422-01 8 133051249 133051249 C T OC90 Silent p.Q193Q 0.24 TCGA-05-4422-01 8 133051317 133051317 C T OC90 Missense_Mutation p.E171K 0.28 deleterious(0) possibly_damaging(0.641) TCGA-05-4422-01 8 142487879 142487879 C T MROH5 3'UTR 0.29 TCGA-05-4422-01 8 22173812 22173812 C T PIWIL2 Missense_Mutation p.R755C 0.06 deleterious(0) benign(0.329) TCGA-05-4422-01 8 61178489 61178489 T C CA8 Missense_Mutation p.M138V 0.32 tolerated(0.17) possibly_damaging(0.556) TCGA-05-4422-01 9 74481838 74481838 G C ABHD17B Silent p.L244L 0.29 TCGA-05-4422-01 9 97522333 97522333 T - C9orf3 Frame_Shift_Del p.F90Sfs*55 0.30 TCGA-05-4422-01 X 135827450 135827450 A T ARHGEF6 Missense_Mutation p.S131T 0.55 tolerated_low_confidence(0.46) benign(0.002) TCGA-05-4422-01 X 144904729 144904729 C A SLITRK2 Silent p.L262L 0.60 TCGA-05-4422-01 X 155252782 155252782 A G WASH6P RNA 0.24 TCGA-05-4424-01 10 103906712 103906712 G C PPRC1 Missense_Mutation p.W1321C 0.11 deleterious(0) probably_damaging(0.999) TCGA-05-4424-01 10 104129046 104129046 C T GBF1 Missense_Mutation p.H1017Y 0.12 deleterious(0) probably_damaging(0.979) TCGA-05-4424-01 10 104233400 104233400 G T TMEM180 Silent p.A333A 0.10 TCGA-05-4424-01 10 105642415 105642415 C A OBFC1 3'UTR 0.10 TCGA-05-4424-01 10 12198911 12198911 G C SEC61A2 Missense_Mutation p.E208Q 0.09 tolerated(0.06) possibly_damaging(0.686) TCGA-05-4424-01 10 122263398 122263398 C A PPAPDC1A Missense_Mutation p.P42H 0.16 tolerated(0.08) possibly_damaging(0.803) TCGA-05-4424-01 10 123596233 123596233 C T ATE1 Silent p.K419K 0.15 TCGA-05-4424-01 10 124399744 124399744 C A DMBT1 Silent p.V2248V 0.20 TCGA-05-4424-01 10 12867623 12867623 G C CAMK1D Missense_Mutation p.G325R 0.12 deleterious(0) possibly_damaging(0.753) TCGA-05-4424-01 10 129906292 129906292 C T MKI67 Missense_Mutation p.R1271K 0.06 tolerated(0.63) possibly_damaging(0.647) TCGA-05-4424-01 10 15290733 15290733 A C FAM171A1 Missense_Mutation p.V220G 0.11 deleterious(0) benign(0.445) TCGA-05-4424-01 10 18292251 18292251 T A SLC39A12 Silent p.T637T 0.14 TCGA-05-4424-01 10 26457774 26457774 G T MYO3A Missense_Mutation p.R1082M 0.16 deleterious(0.03) benign(0.066) TCGA-05-4424-01 10 27306526 27306526 C T ANKRD26 Missense_Mutation p.E1471K 0.07 deleterious(0.01) benign(0.306) TCGA-05-4424-01 10 31809433 31809433 G T ZEB1 Missense_Mutation p.M391I 0.07 tolerated(0.21) benign(0) TCGA-05-4424-01 10 31810851 31810851 C G ZEB1 Missense_Mutation p.P864R 0.23 tolerated(0.57) possibly_damaging(0.714) TCGA-05-4424-01 10 33093962 33093962 G C C10ORF68 Missense_Mutation p.L282F 0.07 tolerated(0.06) probably_damaging(0.986) TCGA-05-4424-01 10 37508354 37508354 T A ANKRD30A Missense_Mutation p.D1182E 0.26 tolerated(0.23) possibly_damaging(0.739) TCGA-05-4424-01 10 44053404 44053404 T C ZNF239 Missense_Mutation p.R42G 0.24 tolerated(0.43) benign(0.077) TCGA-05-4424-01 10 48387913 48387913 G T RBP3 Missense_Mutation p.L989M 0.08 deleterious(0.01) possibly_damaging(0.665) TCGA-05-4424-01 10 50724809 50724809 C T ERCC6-PGBD3 Missense_Mutation p.D586N 0.10 tolerated_low_confidence(0.18) unknown(0) TCGA-05-4424-01 10 50820453 50820453 G T SLC18A3 3'UTR 0.22 TCGA-05-4424-01 10 5242256 5242256 G C AKR1C4 Missense_Mutation p.R66P 0.08 deleterious(0) probably_damaging(0.982) TCGA-05-4424-01 10 5693200 5693200 G A ASB13 Missense_Mutation p.P120S 0.27 deleterious(0) probably_damaging(0.99) TCGA-05-4424-01 10 61014171 61014171 C A FAM13C Silent p.P423P 0.17 TCGA-05-4424-01 10 68979401 68979401 C A CTNNA3 Missense_Mutation p.Q269H 0.08 tolerated(0.18) benign(0.385) TCGA-05-4424-01 10 70333271 70333271 C A TET1 Silent p.T392T 0.21 TCGA-05-4424-01 10 70695825 70695825 G T DDX50 Missense_Mutation p.D529Y 0.17 deleterious(0) probably_damaging(0.984) TCGA-05-4424-01 10 72300921 72300921 G A PALD1 Missense_Mutation p.V658M 0.12 deleterious(0) benign(0.363) TCGA-05-4424-01 10 7269847 7269847 C A SFMBT2 Silent p.A391A 0.32 TCGA-05-4424-01 10 73464725 73464725 G T CDH23 Missense_Mutation p.V523L 0.09 tolerated(0.25) benign(0.061) TCGA-05-4424-01 10 75533499 75533499 C G FUT11 Silent p.A420A 0.11 TCGA-05-4424-01 10 76789167 76789167 G A KAT6B Missense_Mutation p.E1529K 0.17 benign(0.031) TCGA-05-4424-01 10 7684001 7684001 C A ITIH5 Missense_Mutation p.R63L 0.22 deleterious(0) probably_damaging(0.997) TCGA-05-4424-01 10 7830195 7830195 G T ATP5C1 Missense_Mutation p.G9W 0.25 tolerated(0.18) possibly_damaging(0.533) TCGA-05-4424-01 10 83635474 83635474 G T NRG3 Missense_Mutation p.E126D 0.36 tolerated(0.57) probably_damaging(0.98) TCGA-05-4424-01 10 91144225 91144225 C A IFIT1B Silent p.G385G 0.25 TCGA-05-4424-01 10 94593 94593 G A TUBB8 Missense_Mutation p.P80L 0.26 deleterious_low_confidence(0.01) benign(0.028) TCGA-05-4424-01 10 95552545 95552545 G T LGI1 Missense_Mutation p.W183C 0.08 deleterious(0) probably_damaging(0.999) TCGA-05-4424-01 10 97776052 97776052 T A CC2D2B Nonsense_Mutation p.L168* 0.14 TCGA-05-4424-01 11 102820906 102820906 A G MMP13 Missense_Mutation p.C284R 0.06 deleterious(0) probably_damaging(0.999) TCGA-05-4424-01 11 104905838 104905838 C A CASP1 Translation_Start_Site p.M1? 0.12 deleterious(0.01) possibly_damaging(0.878) TCGA-05-4424-01 11 108380887 108380887 G A EXPH5 Silent p.L1783L 0.04 TCGA-05-4424-01 11 113133594 113133594 T A NCAM1 Intron 0.24 TCGA-05-4424-01 11 113133596 113133596 C A NCAM1 Intron 0.25 TCGA-05-4424-01 11 117163902 117163902 G C BACE1 Missense_Mutation p.I236M 0.04 deleterious(0.01) possibly_damaging(0.879) TCGA-05-4424-01 11 118959797 118959797 A G HMBS Missense_Mutation p.M56V 0.24 deleterious(0) possibly_damaging(0.612) TCGA-05-4424-01 11 11985969 11985969 T A DKK3 3'UTR 0.09 TCGA-05-4424-01 11 12265624 12265624 C G MICAL2 Missense_Mutation p.P917A 0.15 deleterious(0.05) benign(0.188) TCGA-05-4424-01 11 122805659 122805659 G T C11orf63 Missense_Mutation p.V504L 0.22 tolerated(0.21) benign(0.245) TCGA-05-4424-01 11 12315660 12315660 C T MICALCL Missense_Mutation p.R228C 0.06 tolerated(0.34) benign(0.001) TCGA-05-4424-01 11 123887059 123887059 A G OR10G4 Missense_Mutation p.R260G 0.09 deleterious(0) probably_damaging(0.952) TCGA-05-4424-01 11 123893753 123893753 C A OR10G9 Missense_Mutation p.L12I 0.13 deleterious(0.01) possibly_damaging(0.69) TCGA-05-4424-01 11 128642833 128642833 T G FLI1 Missense_Mutation p.L181R 0.24 tolerated(0.52) benign(0.023) TCGA-05-4424-01 11 17097027 17097027 G A RPS13 Nonsense_Mutation p.R99* 0.20 TCGA-05-4424-01 11 18750419 18750419 C A PTPN5 3'UTR 0.36 TCGA-05-4424-01 11 18762209 18762209 G T PTPN5 Missense_Mutation p.Q286K 0.07 tolerated(0.06) benign(0.004) TCGA-05-4424-01 11 26702709 26702709 G T SLC5A12 Silent p.A456A 0.27 TCGA-05-4424-01 11 30433061 30433061 G T MPPED2 Missense_Mutation p.T280N 0.24 tolerated(0.46) possibly_damaging(0.83) TCGA-05-4424-01 11 35454105 35454105 G T PAMR1 Silent p.P671P 0.16 TCGA-05-4424-01 11 4389127 4389127 C A OR52B4 Missense_Mutation p.R133S 0.19 deleterious(0) possibly_damaging(0.78) TCGA-05-4424-01 11 44105128 44105128 G T ACCS Splice_Site p.X470_splice 0.08 TCGA-05-4424-01 11 44959781 44959781 C A TP53I11 Missense_Mutation p.D36Y 0.21 deleterious(0) probably_damaging(0.986) TCGA-05-4424-01 11 47746181 47746181 C T FNBP4 Missense_Mutation p.E720K 0.07 deleterious(0.05) benign(0.176) TCGA-05-4424-01 11 4825053 4825053 A T OR52R1 Silent p.A186A 0.07 TCGA-05-4424-01 11 49597847 49597847 G T RP11-707M1.1 RNA 0.28 TCGA-05-4424-01 11 5153245 5153245 G A OR52A5 Silent p.L210L 0.23 TCGA-05-4424-01 11 5153246 5153246 G T OR52A5 Silent p.I209I 0.23 TCGA-05-4424-01 11 5220986 5220986 G C OR51V1 Silent p.L315L 0.09 TCGA-05-4424-01 11 5221848 5221848 C A OR51V1 Missense_Mutation p.G28V 0.23 deleterious(0) probably_damaging(0.988) TCGA-05-4424-01 11 5322428 5322428 A T OR51B4 Missense_Mutation p.I250N 0.18 deleterious(0) possibly_damaging(0.824) TCGA-05-4424-01 11 55111056 55111056 C A OR4A16 Missense_Mutation p.P127Q 0.12 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-05-4424-01 11 55703186 55703186 G T OR5I1 Missense_Mutation p.R231S 0.38 tolerated(0.11) benign(0.282) TCGA-05-4424-01 11 5776426 5776426 G C OR52N4 Silent p.L152L 0.21 TCGA-05-4424-01 11 57799360 57799360 C G OR6Q1 Missense_Mutation p.N312K 0.07 tolerated(1) benign(0) TCGA-05-4424-01 11 5809676 5809676 T A OR52N1 Missense_Mutation p.H124L 0.05 deleterious(0.01) benign(0.001) TCGA-05-4424-01 11 58275424 58275424 T C OR5B21 Missense_Mutation p.H52R 0.14 tolerated_low_confidence(1) benign(0.002) TCGA-05-4424-01 11 5862468 5862468 G T OR52E6 Silent p.I220I 0.08 TCGA-05-4424-01 11 5905568 5905568 C T OR52E4 Silent p.L16L 0.21 TCGA-05-4424-01 11 59224956 59224956 G A OR4D6 Missense_Mutation p.D175N 0.17 deleterious(0.03) possibly_damaging(0.82) TCGA-05-4424-01 11 59814578 59814579 - TT OOSP2 3'UTR 0.10 TCGA-05-4424-01 11 59997483 59997483 G T MS4A4E Missense_Mutation p.P16T 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.803) TCGA-05-4424-01 11 60165337 60165337 C A MS4A14 Missense_Mutation p.L51M 0.17 deleterious(0) probably_damaging(0.997) TCGA-05-4424-01 11 6024334 6024334 G A OR56A4 Silent p.G15G 0.19 TCGA-05-4424-01 11 607393 607393 C T PHRF1 Missense_Mutation p.A645V 0.09 tolerated(0.06) benign(0.348) TCGA-05-4424-01 11 62288697 62288697 T A AHNAK Nonsense_Mutation p.K4398* 0.13 TCGA-05-4424-01 11 62346149 62346149 G A TUT1 Silent p.L386L 0.08 TCGA-05-4424-01 11 62348608 62348608 G A TUT1 Silent p.F258F 0.04 TCGA-05-4424-01 11 62519813 62519813 T C ZBTB3 Missense_Mutation p.T492A 0.12 tolerated(0.12) possibly_damaging(0.855) TCGA-05-4424-01 11 62603205 62603205 G C WDR74 Missense_Mutation p.L160V 0.09 deleterious(0.04) possibly_damaging(0.831) TCGA-05-4424-01 11 62606600 62606600 G A WDR74 Silent p.L93L 0.06 TCGA-05-4424-01 11 6291464 6291464 C A CCKBR Missense_Mutation p.L184I 0.09 tolerated(0.38) benign(0.401) TCGA-05-4424-01 11 65721189 65721189 C G TSGA10IP RNA 0.21 TCGA-05-4424-01 11 66235598 66235598 G A PELI3 Splice_Site 0.07 TCGA-05-4424-01 11 6816949 6816949 C A OR6A2 5'UTR 0.15 TCGA-05-4424-01 11 6891129 6891129 C T OR10A2 Silent p.F48F 0.06 TCGA-05-4424-01 11 6913519 6913519 G A OR2D2 Silent p.L71L 0.21 TCGA-05-4424-01 11 70319477 70319477 C A SHANK2 Missense_Mutation p.G1684C 0.10 deleterious(0) probably_damaging(0.981) TCGA-05-4424-01 11 70507709 70507709 C A SHANK2 Missense_Mutation p.G644V 0.16 deleterious(0) probably_damaging(0.997) TCGA-05-4424-01 11 74053997 74053997 C T PGM2L1 Missense_Mutation p.E459K 0.08 deleterious(0.01) benign(0.304) TCGA-05-4424-01 11 76372213 76372213 C A LRRC32 Nonsense_Mutation p.E142* 0.21 TCGA-05-4424-01 11 78412999 78412999 G T TENM4 Silent p.A1553A 0.13 TCGA-05-4424-01 11 82571045 82571045 C A PRCP Missense_Mutation p.D116Y 0.12 deleterious(0.02) probably_damaging(0.994) TCGA-05-4424-01 11 82880813 82880813 C G PCF11 Missense_Mutation p.P1146A 0.18 tolerated(0.06) possibly_damaging(0.888) TCGA-05-4424-01 11 84027986 84027986 C A DLG2 Intron 0.13 TCGA-05-4424-01 11 89537597 89537597 A T TRIM49 Missense_Mutation p.I14N 0.10 deleterious(0.03) benign(0.007) TCGA-05-4424-01 11 89885563 89885563 G T NAALAD2 Missense_Mutation p.W236L 0.19 deleterious(0) probably_damaging(1) TCGA-05-4424-01 11 9005043 9005043 C T NRIP3 3'UTR 0.24 TCGA-05-4424-01 11 92495149 92495149 G A FAT3 Missense_Mutation p.R1266H 0.12 probably_damaging(1) TCGA-05-4424-01 12 101520766 101520766 A G ANO4 Missense_Mutation p.Y894C 0.27 deleterious(0) probably_damaging(0.998) TCGA-05-4424-01 12 104397019 104397019 C A GLT8D2 Missense_Mutation p.G60W 0.15 deleterious(0.01) probably_damaging(0.97) TCGA-05-4424-01 12 108010866 108010866 C A BTBD11 Missense_Mutation p.L668I 0.12 tolerated(0.14) possibly_damaging(0.869) TCGA-05-4424-01 12 108685637 108685637 C A CMKLR1 Missense_Mutation p.R368M 0.20 deleterious(0.01) possibly_damaging(0.45) TCGA-05-4424-01 12 109294182 109294182 C A DAO Silent p.V305V 0.20 TCGA-05-4424-01 12 112369362 112369362 A T TMEM116 3'UTR 0.22 TCGA-05-4424-01 12 114397086 114397086 C A RBM19 Missense_Mutation p.D168Y 0.23 deleterious(0) probably_damaging(0.996) TCGA-05-4424-01 12 116420396 116420396 C A MED13L Missense_Mutation p.R1656S 0.15 tolerated(0.06) possibly_damaging(0.535) TCGA-05-4424-01 12 116675300 116675300 C G MED13L Missense_Mutation p.V95L 0.28 tolerated(0.16) unknown(0) TCGA-05-4424-01 12 118020147 118020147 G A KSR2 Missense_Mutation p.R397C 0.06 deleterious(0.02) probably_damaging(0.982) TCGA-05-4424-01 12 121878685 121878685 A T KDM2B Missense_Mutation p.W1182R 0.08 deleterious(0) probably_damaging(0.999) TCGA-05-4424-01 12 124496642 124496642 G T ZNF664 5'UTR 0.14 TCGA-05-4424-01 12 130907029 130907029 C G RIMBP2 Missense_Mutation p.Q813H 0.11 tolerated(0.16) benign(0.005) TCGA-05-4424-01 12 131466440 131466448 TCTTTTTTC - GPR133 In_Frame_Del p.S108_F110del 0.45 TCGA-05-4424-01 12 132400970 132400970 A G ULK1 Missense_Mutation p.T636A 0.15 tolerated(0.06) benign(0.002) TCGA-05-4424-01 12 133196907 133196907 C A P2RX2 Silent p.I203I 0.25 TCGA-05-4424-01 12 15130908 15130908 G T PDE6H Intron 0.37 TCGA-05-4424-01 12 15130909 15130909 G T PDE6H 5'UTR 0.38 TCGA-05-4424-01 12 24102629 24102629 G T SOX5 5'UTR 0.24 TCGA-05-4424-01 12 32884849 32884849 G T DNM1L Missense_Mutation p.R473L 0.17 deleterious(0) probably_damaging(0.991) TCGA-05-4424-01 12 34176900 34176900 G A ALG10 Missense_Mutation p.D59N 0.29 deleterious(0) probably_damaging(0.979) TCGA-05-4424-01 12 34179422 34179422 G A ALG10 Missense_Mutation p.V332I 0.16 tolerated(0.78) benign(0.006) TCGA-05-4424-01 12 3701483 3701483 G - PRMT8 Frame_Shift_Del p.T357Pfs*4 0.30 TCGA-05-4424-01 12 40709081 40709081 G T LRRK2 Missense_Mutation p.W1602C 0.27 deleterious(0) probably_damaging(0.999) TCGA-05-4424-01 12 4737560 4737560 T - AKAP3 Frame_Shift_Del p.S170Afs*5 0.25 TCGA-05-4424-01 12 48371152 48371152 G T COL2A1 Missense_Mutation p.S1075Y 0.08 unknown(0) TCGA-05-4424-01 12 50571335 50571335 G C LIMA1 Missense_Mutation p.Q599E 0.11 tolerated(0.1) benign(0.011) TCGA-05-4424-01 12 50571584 50571584 G C LIMA1 Missense_Mutation p.Q516E 0.14 tolerated(0.31) benign(0.004) TCGA-05-4424-01 12 51695872 51695872 C T BIN2 Missense_Mutation p.E114K 0.12 deleterious(0) probably_damaging(0.934) TCGA-05-4424-01 12 53041528 53041528 G A KRT2 Missense_Mutation p.H412Y 0.15 deleterious(0) probably_damaging(0.955) TCGA-05-4424-01 12 53202170 53202170 C A KRT4 Missense_Mutation p.G345C 0.18 deleterious(0) probably_damaging(1) TCGA-05-4424-01 12 53431372 53431372 C G EIF4B Missense_Mutation p.Q496E 0.09 tolerated(0.59) benign(0.304) TCGA-05-4424-01 12 6709529 6709529 C G CHD4 Missense_Mutation p.E366Q 0.07 deleterious(0.02) benign(0.024) TCGA-05-4424-01 12 70928675 70928675 G T PTPRB Missense_Mutation p.L2048M 0.23 deleterious(0) probably_damaging(0.925) TCGA-05-4424-01 12 72335436 72335436 G C TPH2 Missense_Mutation p.E60Q 0.12 tolerated(0.15) benign(0.401) TCGA-05-4424-01 12 7361763 7361763 C T PEX5 Silent p.P534P 0.39 TCGA-05-4424-01 12 78513135 78513135 C T NAV3 Silent p.P1053P 0.23 TCGA-05-4424-01 12 81112769 81112769 C A MYF5 Missense_Mutation p.T236N 0.11 tolerated(0.38) benign(0.022) TCGA-05-4424-01 12 8245640 8245640 G T NECAP1 Missense_Mutation p.G222V 0.16 tolerated(0.37) benign(0.116) TCGA-05-4424-01 12 8374849 8374849 C T FAM90A1 Missense_Mutation p.G322R 0.17 tolerated(0.45) benign(0.202) TCGA-05-4424-01 12 91348087 91348087 G A CCER1 Missense_Mutation p.R145C 0.11 deleterious(0) probably_damaging(0.942) TCGA-05-4424-01 12 96292380 96292380 C A CCDC38 Nonsense_Mutation p.E167* 0.18 TCGA-05-4424-01 12 96292419 96292419 G T CCDC38 Missense_Mutation p.L154I 0.27 deleterious(0) probably_damaging(1) TCGA-05-4424-01 12 99898273 99898273 C A ANKS1B Missense_Mutation p.R473S 0.23 tolerated(0.09) benign(0.175) TCGA-05-4424-01 13 101726892 101726892 G T NALCN Missense_Mutation p.T1359N 0.10 tolerated(0.13) benign(0.147) TCGA-05-4424-01 13 101756713 101756713 C A NALCN Missense_Mutation p.G941V 0.11 deleterious(0) probably_damaging(1) TCGA-05-4424-01 13 102030993 102030993 G T NALCN Silent p.S101S 0.15 TCGA-05-4424-01 13 103698485 103698485 A C SLC10A2 Nonstop_Mutation p.*349Eext*17 0.15 TCGA-05-4424-01 13 107164970 107164970 C A EFNB2 Missense_Mutation p.D105Y 0.10 tolerated(0.06) benign(0.441) TCGA-05-4424-01 13 20246068 20246068 T A MPHOSPH8 3'UTR 0.28 TCGA-05-4424-01 13 21563266 21563266 C A LATS2 Missense_Mutation p.G218V 0.20 tolerated_low_confidence(0.17) benign(0.258) TCGA-05-4424-01 13 31233061 31233061 C T USPL1 Silent p.A949A 0.17 TCGA-05-4424-01 13 33703295 33703295 C G STARD13 Missense_Mutation p.V507L 0.07 tolerated(0.39) benign(0.004) TCGA-05-4424-01 13 78474043 78474043 T A EDNRB Missense_Mutation p.N472I 0.12 deleterious(0) probably_damaging(1) TCGA-05-4424-01 13 86369524 86369524 T A SLITRK6 Missense_Mutation p.I374F 0.11 tolerated(0.23) possibly_damaging(0.704) TCGA-05-4424-01 13 95117945 95117945 C G DCT Missense_Mutation p.D269H 0.08 deleterious(0) probably_damaging(0.985) TCGA-05-4424-01 14 102472507 102472507 G C DYNC1H1 Missense_Mutation p.G1906R 0.28 probably_damaging(1) TCGA-05-4424-01 14 104220583 104220583 T A PPP1R13B Splice_Site p.X153_splice 0.13 TCGA-05-4424-01 14 105395186 105395186 G A PLD4 Missense_Mutation p.A129T 0.13 deleterious(0.04) benign(0.267) TCGA-05-4424-01 14 19553761 19553761 C A POTEG Missense_Mutation p.S115R 0.13 tolerated(0.11) possibly_damaging(0.811) TCGA-05-4424-01 14 20444601 20444601 T C OR4K15 Silent p.P308P 0.09 TCGA-05-4424-01 14 20502628 20502628 C G OR4K13 Missense_Mutation p.C97S 0.30 deleterious(0) probably_damaging(0.999) TCGA-05-4424-01 14 21424061 21424061 A T RNASE2 Missense_Mutation p.N44I 0.15 deleterious(0.03) benign(0.378) TCGA-05-4424-01 14 21992261 21992261 G A SALL2 Missense_Mutation p.S534L 0.05 tolerated(0.12) probably_damaging(0.989) TCGA-05-4424-01 14 22509139 22509139 C T TRAV20 Missense_Mutation p.T26M 0.27 tolerated(0.07) benign(0.009) TCGA-05-4424-01 14 23902894 23902894 C A MYH7 Silent p.L16L 0.10 TCGA-05-4424-01 14 39716921 39716921 T - MIA2 Frame_Shift_Del p.F382Lfs*4 0.09 TCGA-05-4424-01 14 63269127 63269127 C A KCNH5 Missense_Mutation p.G581V 0.25 deleterious(0) probably_damaging(0.992) TCGA-05-4424-01 14 64066267 64066267 C A WDR89 Missense_Mutation p.A132S 0.07 deleterious(0.01) possibly_damaging(0.529) TCGA-05-4424-01 14 65419249 65419249 G A RAB15 Silent p.I55I 0.13 TCGA-05-4424-01 14 72176331 72176331 G T SIPA1L1 Silent p.L1407L 0.27 TCGA-05-4424-01 14 73554749 73554749 C T RBM25 Silent p.L141L 0.06 TCGA-05-4424-01 14 81251424 81251424 C A CEP128 Missense_Mutation p.D676Y 0.11 deleterious(0.02) possibly_damaging(0.696) TCGA-05-4424-01 14 81609827 81609827 C A TSHR Silent p.L475L 0.25 TCGA-05-4424-01 14 81670426 81670426 T A GTF2A1 Missense_Mutation p.Q52L 0.24 deleterious(0) probably_damaging(0.983) TCGA-05-4424-01 14 88940125 88940125 C G PTPN21 Missense_Mutation p.D845H 0.05 deleterious(0) possibly_damaging(0.779) TCGA-05-4424-01 14 90651011 90651011 G C KCNK13 Silent p.G297G 0.06 TCGA-05-4424-01 14 90764712 90764712 C A NRDE2 Nonsense_Mutation p.E520* 0.28 TCGA-05-4424-01 14 91059911 91059911 C A TTC7B Missense_Mutation p.A676S 0.12 tolerated(0.42) benign(0.021) TCGA-05-4424-01 14 93685569 93685569 G T UBR7 Missense_Mutation p.K274N 0.12 tolerated(0.18) benign(0.002) TCGA-05-4424-01 14 94640768 94640768 G T PPP4R4 5'UTR 0.43 TCGA-05-4424-01 14 94780726 94780726 G T SERPINA6 Missense_Mutation p.A87D 0.31 deleterious(0.01) benign(0.099) TCGA-05-4424-01 15 25310255 25310255 C A SNORD116-6 RNA 0.15 TCGA-05-4424-01 15 27777961 27777961 G T GABRG3 Silent p.R446R 0.11 TCGA-05-4424-01 15 34146975 34146975 C A RYR3 Silent p.L4623L 0.15 TCGA-05-4424-01 15 41870231 41870231 T C TYRO3 Silent p.A810A 0.15 TCGA-05-4424-01 15 43621794 43621794 C G LCMT2 Missense_Mutation p.E298D 0.14 deleterious(0) probably_damaging(0.998) TCGA-05-4424-01 15 48756162 48756162 C A FBN1 Missense_Mutation p.V1667F 0.09 benign(0.373) TCGA-05-4424-01 15 50791203 50791203 C G USP8 Missense_Mutation p.S1092C 0.08 deleterious(0) benign(0.375) TCGA-05-4424-01 15 53908074 53908074 T C WDR72 Missense_Mutation p.K777E 0.12 tolerated(0.09) possibly_damaging(0.786) TCGA-05-4424-01 15 54786898 54786898 C A UNC13C Missense_Mutation p.P1676T 0.09 deleterious_low_confidence(0.01) benign(0.052) TCGA-05-4424-01 15 54786899 54786899 C A UNC13C Missense_Mutation p.P1676H 0.09 deleterious_low_confidence(0.01) benign(0.024) TCGA-05-4424-01 15 69011757 69011757 G T CORO2B Missense_Mutation p.V393L 0.04 tolerated(0.31) benign(0.014) TCGA-05-4424-01 15 69320705 69320705 G T NOX5 Missense_Mutation p.V109L 0.15 tolerated_low_confidence(0.32) benign(0.01) TCGA-05-4424-01 15 69339750 69339750 C T NOX5 Intron 0.09 TCGA-05-4424-01 15 72191281 72191281 C G MYO9A Missense_Mutation p.G1188A 0.09 deleterious_low_confidence(0.03) probably_damaging(0.974) TCGA-05-4424-01 15 72191292 72191292 C A MYO9A Silent p.L1184L 0.10 TCGA-05-4424-01 15 72533888 72533888 C A PARP6 Missense_Mutation p.G601C 0.11 deleterious(0) probably_damaging(1) TCGA-05-4424-01 15 83328316 83328316 T A AP3B2 Missense_Mutation p.Q1082L 0.17 deleterious(0) benign(0.069) TCGA-05-4424-01 15 85165222 85165222 C A ZSCAN2 Missense_Mutation p.S599Y 0.14 deleterious(0) probably_damaging(0.991) TCGA-05-4424-01 15 93016280 93016280 C T C15orf32 Missense_Mutation p.L158F 0.11 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-05-4424-01 16 14540932 14540932 T A PARN Silent p.T559T 0.13 TCGA-05-4424-01 16 17211722 17211722 C T XYLT1 Missense_Mutation p.V780M 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-05-4424-01 16 17232324 17232324 C A XYLT1 Missense_Mutation p.R551L 0.15 deleterious(0) benign(0.359) TCGA-05-4424-01 16 17294420 17294420 G T XYLT1 Missense_Mutation p.H335Q 0.18 deleterious(0) probably_damaging(1) TCGA-05-4424-01 16 1826213 1826213 G C EME2 Missense_Mutation p.D372H 0.23 deleterious(0.01) benign(0.377) TCGA-05-4424-01 16 20329602 20329602 C A GP2 Silent p.G389G 0.09 TCGA-05-4424-01 16 20373850 20373850 C T PDILT Missense_Mutation p.G431D 0.11 deleterious(0) probably_damaging(1) TCGA-05-4424-01 16 2110757 2110757 G T TSC2 Missense_Mutation p.Q354H 0.19 deleterious(0.01) possibly_damaging(0.8) TCGA-05-4424-01 16 21636437 21636437 G T METTL9 Splice_Site p.X251_splice 0.15 TCGA-05-4424-01 16 2312759 2312759 G A RNPS1 Silent p.L168L 0.08 TCGA-05-4424-01 16 27078357 27078357 G T C16orf82 RNA 0.15 TCGA-05-4424-01 16 2766520 2766520 C T PRSS27 Silent p.Q18Q 0.22 TCGA-05-4424-01 16 29872528 29872528 C T CDIPT Missense_Mutation p.M77I 0.08 deleterious(0.03) possibly_damaging(0.771) TCGA-05-4424-01 16 30486668 30486668 G - ITGAL Frame_Shift_Del p.S69Tfs*17 0.08 TCGA-05-4424-01 16 3100498 3100498 C T MMP25 Silent p.S204S 0.05 TCGA-05-4424-01 16 31427872 31427872 G T ITGAD Missense_Mutation p.V802L 0.20 tolerated(0.15) possibly_damaging(0.763) TCGA-05-4424-01 16 34739704 34739704 T C RP11-80F22.15 RNA 0.07 TCGA-05-4424-01 16 4310163 4310163 G A TFAP4 Silent p.V250V 0.11 TCGA-05-4424-01 16 4934045 4934045 C T PPL Silent p.V1537V 0.05 TCGA-05-4424-01 16 50118121 50118121 G T HEATR3 Missense_Mutation p.E403D 0.23 tolerated(0.37) benign(0.002) TCGA-05-4424-01 16 50813643 50813643 C G CYLD Silent p.L402L 0.07 TCGA-05-4424-01 16 55803950 55803950 A G CES1P1 RNA 0.37 TCGA-05-4424-01 16 56642595 56642595 G T MT2A Missense_Mutation p.G10C 0.15 deleterious(0) probably_damaging(0.995) TCGA-05-4424-01 16 61854915 61854915 T A CDH8 Missense_Mutation p.Y313F 0.11 tolerated(0.07) benign(0.04) TCGA-05-4424-01 16 70796856 70796856 C A VAC14 Silent p.T411T 0.15 TCGA-05-4424-01 16 7383019 7383019 G C RBFOX1 Missense_Mutation p.G6A 0.10 tolerated_low_confidence(0.24) probably_damaging(0.997) TCGA-05-4424-01 16 7721569 7721569 C A RBFOX1 Missense_Mutation p.Q321K 0.21 deleterious(0) possibly_damaging(0.839) TCGA-05-4424-01 16 86601202 86601202 C A FOXC2 Missense_Mutation p.N87K 0.06 deleterious(0) possibly_damaging(0.719) TCGA-05-4424-01 16 89958629 89958629 A T TCF25 Nonsense_Mutation p.K215* 0.17 TCGA-05-4424-01 16 90001147 90001147 G C TUBB3 Silent p.G96G 0.29 TCGA-05-4424-01 17 10433220 10433220 T A MYH2 Nonsense_Mutation p.K957* 0.31 TCGA-05-4424-01 17 16004785 16004785 G A NCOR1 Silent p.D823D 0.08 TCGA-05-4424-01 17 16855818 16855818 G A TNFRSF13B Silent p.C47C 0.16 TCGA-05-4424-01 17 17106395 17106395 C T PLD6 Missense_Mutation p.D149N 0.10 tolerated(0.17) benign(0.121) TCGA-05-4424-01 17 21318835 21318835 G A KCNJ12 Missense_Mutation p.D61N 0.16 tolerated(0.22) benign(0.003) TCGA-05-4424-01 17 27308745 27308745 G A SEZ6 Missense_Mutation p.T123I 0.22 deleterious(0.01) possibly_damaging(0.623) TCGA-05-4424-01 17 27493181 27493181 C A MYO18A Missense_Mutation p.G260C 0.34 deleterious(0) probably_damaging(1) TCGA-05-4424-01 17 27945929 27945929 T A CORO6 Missense_Mutation p.D171V 0.33 deleterious(0.03) possibly_damaging(0.662) TCGA-05-4424-01 17 29670033 29670033 G T NF1 Nonsense_Mutation p.E2357* 0.24 TCGA-05-4424-01 17 33288465 33288465 C G CCT6B 5'UTR 0.06 TCGA-05-4424-01 17 33687322 33687322 G T SLFN11 Missense_Mutation p.P380T 0.23 tolerated(0.4) probably_damaging(0.972) TCGA-05-4424-01 17 34234038 34234038 T A AC015849.16 RNA 0.11 TCGA-05-4424-01 17 34935847 34935847 G C GGNBP2 Missense_Mutation p.E340Q 0.04 tolerated(0.09) benign(0.181) TCGA-05-4424-01 17 35980934 35980934 T A DDX52 Nonsense_Mutation p.K521* 0.18 TCGA-05-4424-01 17 37595433 37595433 A G MED1 Missense_Mutation p.L138P 0.15 deleterious(0) probably_damaging(0.999) TCGA-05-4424-01 17 39389067 39389067 G C KRTAP9-3 Missense_Mutation p.C105S 0.08 deleterious(0.03) probably_damaging(0.997) TCGA-05-4424-01 17 39503334 39503334 C A KRT33A Silent p.V243V 0.17 TCGA-05-4424-01 17 39596834 39596834 G C KRT38 Missense_Mutation p.R114G 0.26 deleterious(0) probably_damaging(0.913) TCGA-05-4424-01 17 40452733 40452733 G A STAT5A Nonsense_Mutation p.W278* 0.11 TCGA-05-4424-01 17 41243499 41243499 C G BRCA1 Missense_Mutation p.G1350A 0.26 tolerated(0.16) benign(0.028) TCGA-05-4424-01 17 41832830 41832830 G T SOST Missense_Mutation p.H174Q 0.09 deleterious(0.03) probably_damaging(0.98) TCGA-05-4424-01 17 42855137 42855137 T C ADAM11 Missense_Mutation p.M659T 0.15 deleterious(0) possibly_damaging(0.581) TCGA-05-4424-01 17 42855212 42855212 G A ADAM11 Missense_Mutation p.R684Q 0.17 tolerated(0.55) benign(0.006) TCGA-05-4424-01 17 43013481 43013481 C A KIF18B Nonsense_Mutation p.E78* 0.16 TCGA-05-4424-01 17 43227518 43227518 C T HEXIM1 Missense_Mutation p.R321C 0.24 deleterious(0) probably_damaging(0.989) TCGA-05-4424-01 17 4349344 4349344 A T SPNS3 Missense_Mutation p.Y135F 0.25 tolerated(0.09) benign(0.063) TCGA-05-4424-01 17 45691032 45691032 T A NPEPPS Intron 0.18 TCGA-05-4424-01 17 45915787 45915787 A G SCRN2 Missense_Mutation p.M323T 0.06 tolerated(0.27) benign(0) TCGA-05-4424-01 17 46703206 46703206 C A HOXB9 Silent p.A142A 0.11 TCGA-05-4424-01 17 47794983 47794983 C A FAM117A Missense_Mutation p.A268S 0.27 tolerated(1) benign(0.007) TCGA-05-4424-01 17 5051907 5051907 C A USP6 Missense_Mutation p.L830I 0.32 tolerated_low_confidence(0.37) benign(0.085) TCGA-05-4424-01 17 51901063 51901063 C G KIF2B Silent p.L223L 0.21 TCGA-05-4424-01 17 52990037 52990038 TG - TOM1L1 Frame_Shift_Del p.V80Afs*18 0.17 TCGA-05-4424-01 17 56350859 56350859 C - MPO Frame_Shift_Del p.D513Tfs*45 0.15 TCGA-05-4424-01 17 56602523 56602523 A G SEPT4 Missense_Mutation p.V208A 0.11 tolerated(0.13) possibly_damaging(0.652) TCGA-05-4424-01 17 56676440 56676440 C G TEX14 Missense_Mutation p.D762H 0.30 deleterious(0.02) possibly_damaging(0.808) TCGA-05-4424-01 17 58512569 58512569 C G C17orf64 3'Flank 0.11 TCGA-05-4424-01 17 58512642 58512642 G A C17orf64 3'Flank 0.13 TCGA-05-4424-01 17 58539393 58539393 C A APPBP2 Missense_Mutation p.K264N 0.12 deleterious(0.02) benign(0.216) TCGA-05-4424-01 17 59556126 59556126 T G TBX4 Missense_Mutation p.Y230D 0.10 deleterious(0) probably_damaging(0.912) TCGA-05-4424-01 17 64875131 64875131 C T CACNG5 Missense_Mutation p.P80S 0.24 deleterious(0) benign(0.403) TCGA-05-4424-01 17 66871472 66871472 C G ABCA8 Missense_Mutation p.K1480N 0.10 tolerated(0.09) probably_damaging(0.918) TCGA-05-4424-01 17 67189378 67189378 T C ABCA10 Silent p.L551L 0.04 TCGA-05-4424-01 17 67303002 67303002 G - ABCA5 Frame_Shift_Del p.R218Efs*3 0.14 TCGA-05-4424-01 17 68129006 68129006 G C KCNJ16 Missense_Mutation p.E260Q 0.04 tolerated(0.09) possibly_damaging(0.46) TCGA-05-4424-01 17 6978507 6978507 C G CLEC10A Missense_Mutation p.G273R 0.29 deleterious(0.02) probably_damaging(0.997) TCGA-05-4424-01 17 72739292 72739292 C T RAB37 Missense_Mutation p.R96W 0.04 deleterious(0) probably_damaging(0.999) TCGA-05-4424-01 17 73106466 73106466 A T ARMC7 Missense_Mutation p.Q28L 0.17 tolerated(0.09) benign(0.028) TCGA-05-4424-01 17 73238543 73238543 C T GGA3 Silent p.R207R 0.09 TCGA-05-4424-01 17 73627074 73627074 A T RECQL5 Missense_Mutation p.I522K 0.22 tolerated(1) benign(0.002) TCGA-05-4424-01 17 73663513 73663513 G C SAP30BP Missense_Mutation p.E21Q 0.08 tolerated_low_confidence(0.11) benign(0.109) TCGA-05-4424-01 17 73851355 73851355 C T WBP2 Silent p.S8S 0.09 TCGA-05-4424-01 17 7578268 7578268 A C TP53 Missense_Mutation p.L194R 0.45 deleterious(0) probably_damaging(1) TCGA-05-4424-01 17 8222414 8222414 G T ARHGEF15 Missense_Mutation p.R708L 0.36 tolerated(0.31) benign(0.064) TCGA-05-4424-01 17 8731893 8731893 T C PIK3R6 Missense_Mutation p.H435R 0.19 deleterious(0.02) benign(0.009) TCGA-05-4424-01 17 9501631 9501631 G C WDR16 Missense_Mutation p.R206T 0.09 deleterious(0) possibly_damaging(0.696) TCGA-05-4424-01 18 10671680 10671680 A G PIEZO2 Silent p.L2701L 0.13 TCGA-05-4424-01 18 21441740 21441740 G T LAMA3 Missense_Mutation p.W1518L 0.23 probably_damaging(1) TCGA-05-4424-01 18 22020507 22020507 G A IMPACT Missense_Mutation p.D139N 0.23 tolerated(0.09) benign(0.013) TCGA-05-4424-01 18 22806338 22806338 C A ZNF521 Missense_Mutation p.C515F 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-05-4424-01 18 23845200 23845200 G T TAF4B Missense_Mutation p.R137I 0.24 deleterious(0.02) benign(0.288) TCGA-05-4424-01 18 2674057 2674057 A G SMCHD1 Missense_Mutation p.D184G 0.12 deleterious(0) probably_damaging(1) TCGA-05-4424-01 18 28737517 28737517 G C DSC1 Silent p.L56L 0.08 TCGA-05-4424-01 18 2922155 2922155 G T LPIN2 Silent p.G739G 0.18 TCGA-05-4424-01 18 48331607 48331607 C T MRO Missense_Mutation p.V130I 0.11 tolerated(0.5) benign(0.004) TCGA-05-4424-01 18 59195204 59195204 T C CDH20 Missense_Mutation p.L341P 0.36 deleterious(0) probably_damaging(0.986) TCGA-05-4424-01 18 60506065 60506065 G T PHLPP1 Nonsense_Mutation p.G608* 0.35 TCGA-05-4424-01 18 61326698 61326698 T C SERPINB3 Missense_Mutation p.T96A 0.33 deleterious(0.02) benign(0.032) TCGA-05-4424-01 18 61562575 61562575 G T SERPINB2 Missense_Mutation p.M82I 0.27 tolerated(0.23) benign(0.02) TCGA-05-4424-01 18 76754668 76754668 A T SALL3 Missense_Mutation p.S893C 0.17 deleterious(0) probably_damaging(0.986) TCGA-05-4424-01 18 9775294 9775294 C T RAB31 Missense_Mutation p.S20L 0.05 deleterious(0) probably_damaging(0.989) TCGA-05-4424-01 19 11660685 11660685 C A CNN1 3'UTR 0.15 TCGA-05-4424-01 19 12298356 12298356 G T ZNF136 Missense_Mutation p.G388V 0.10 deleterious(0.02) probably_damaging(0.987) TCGA-05-4424-01 19 14034556 14034556 G T CC2D1A Missense_Mutation p.K624N 0.19 deleterious(0) possibly_damaging(0.887) TCGA-05-4424-01 19 14513455 14513455 G T CD97 Missense_Mutation p.L410F 0.39 tolerated(0.05) probably_damaging(0.931) TCGA-05-4424-01 19 14952214 14952214 T A OR7A10 Missense_Mutation p.Q159L 0.30 deleterious_low_confidence(0.01) benign(0.345) TCGA-05-4424-01 19 15734867 15734867 G T CYP4F8 RNA 0.20 TCGA-05-4424-01 19 15784533 15784533 G T CYP4F12 Missense_Mutation p.G65V 0.07 deleterious(0.02) benign(0.285) TCGA-05-4424-01 19 1599507 1599507 C T UQCR11 Missense_Mutation p.A35T 0.09 tolerated(0.31) benign(0.152) TCGA-05-4424-01 19 16060501 16060501 G C OR10H4 Missense_Mutation p.L228F 0.04 deleterious(0.03) probably_damaging(0.991) TCGA-05-4424-01 19 16799110 16799110 G A TMEM38A Silent p.S276S 0.10 TCGA-05-4424-01 19 16910855 16910855 G A NWD1 Silent p.R1206R 0.09 TCGA-05-4424-01 19 17160601 17160601 C G HAUS8 3'UTR 0.13 TCGA-05-4424-01 19 19645921 19645921 G T YJEFN3 Missense_Mutation p.G133W 0.11 deleterious(0) probably_damaging(1) TCGA-05-4424-01 19 22364202 22364202 G A ZNF676 Missense_Mutation p.T106I 0.43 tolerated(0.19) benign(0.024) TCGA-05-4424-01 19 2873608 2873608 C A ZNF556 Missense_Mutation p.L40M 0.20 deleterious(0) probably_damaging(1) TCGA-05-4424-01 19 30934628 30934628 G T ZNF536 Silent p.R53R 0.14 TCGA-05-4424-01 19 30936268 30936268 C A ZNF536 Missense_Mutation p.P600H 0.40 deleterious(0.05) probably_damaging(0.935) TCGA-05-4424-01 19 31040277 31040277 C A ZNF536 Missense_Mutation p.P1251T 0.13 tolerated_low_confidence(0.1) benign(0.046) TCGA-05-4424-01 19 36033824 36033824 C A GAPDHS Intron 0.17 TCGA-05-4424-01 19 3641745 3641757 GCAGGCTCCACCT - PIP5K1C Frame_Shift_Del p.Q578Rfs*29 0.22 TCGA-05-4424-01 19 36562587 36562587 G T WDR62 Missense_Mutation p.G338W 0.09 deleterious(0) probably_damaging(0.998) TCGA-05-4424-01 19 37006026 37006026 T A ZNF260 Nonsense_Mutation p.K39* 0.09 TCGA-05-4424-01 19 37399297 37399297 G T ZNF829 Missense_Mutation p.A135D 0.17 tolerated(0.07) benign(0.006) TCGA-05-4424-01 19 38056663 38056663 A G ZNF571 Missense_Mutation p.Y223H 0.08 deleterious(0.02) probably_damaging(0.986) TCGA-05-4424-01 19 38160023 38160023 C A ZNF781 3'UTR 0.21 TCGA-05-4424-01 19 38190116 38190116 C A ZNF607 Nonsense_Mutation p.E306* 0.15 TCGA-05-4424-01 19 39421872 39421872 G T MRPS12 5'UTR 0.24 TCGA-05-4424-01 19 39694555 39694555 A T SYCN Missense_Mutation p.Y114N 0.26 tolerated(0.05) possibly_damaging(0.851) TCGA-05-4424-01 19 41622361 41622361 T A CYP2F1 Missense_Mutation p.L58Q 0.11 deleterious(0) probably_damaging(0.988) TCGA-05-4424-01 19 42489545 42489545 C A ATP1A3 Nonsense_Mutation p.E226* 0.28 TCGA-05-4424-01 19 42510926 42510926 C T GRIK5 Silent p.T636T 0.18 TCGA-05-4424-01 19 43414865 43414865 C G PSG6 Missense_Mutation p.R191S 0.08 tolerated(0.05) benign(0.012) TCGA-05-4424-01 19 43576039 43576039 C A PSG2 Missense_Mutation p.L259F 0.21 tolerated(0.06) probably_damaging(1) TCGA-05-4424-01 19 43763273 43763273 G T PSG9 Missense_Mutation p.P242T 0.11 tolerated(0.07) probably_damaging(0.987) TCGA-05-4424-01 19 44273909 44273909 C A KCNN4 Missense_Mutation p.V298L 0.15 deleterious(0) possibly_damaging(0.862) TCGA-05-4424-01 19 44585189 44585189 G A ZNF284 Missense_Mutation p.V13M 0.11 deleterious(0) probably_damaging(0.998) TCGA-05-4424-01 19 44590804 44590804 G T ZNF284 Silent p.R391R 0.25 TCGA-05-4424-01 19 44680896 44680897 AG - ZNF226 Frame_Shift_Del p.R495Sfs*12 0.08 TCGA-05-4424-01 19 44791690 44791690 C G ZNF235 Missense_Mutation p.G633A 0.04 deleterious(0) probably_damaging(0.985) TCGA-05-4424-01 19 45818777 45818777 G T CKM Missense_Mutation p.P143T 0.11 deleterious(0.04) possibly_damaging(0.817) TCGA-05-4424-01 19 46287458 46287458 G C DMWD 3'UTR 0.10 TCGA-05-4424-01 19 49378083 49378083 G T PPP1R15A Silent p.L531L 0.17 TCGA-05-4424-01 19 51274412 51274412 G T GPR32 Missense_Mutation p.W185C 0.15 tolerated(0.18) benign(0.295) TCGA-05-4424-01 19 51960729 51960729 C A SIGLEC8 Missense_Mutation p.R240L 0.31 tolerated(0.14) benign(0.009) TCGA-05-4424-01 19 5206810 5206810 C T PTPRS Missense_Mutation p.G1941E 0.12 deleterious(0) possibly_damaging(0.666) TCGA-05-4424-01 19 52147104 52147104 C A SIGLEC14 Nonsense_Mutation p.G314* 0.11 TCGA-05-4424-01 19 5244311 5244311 C A PTPRS Missense_Mutation p.G391C 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-05-4424-01 19 53303365 53303365 G A ZNF28 Missense_Mutation p.P578L 0.21 tolerated(0.09) probably_damaging(0.999) TCGA-05-4424-01 19 53311326 53311326 C T ZNF28 Missense_Mutation p.D26N 0.11 tolerated(0.11) benign(0.193) TCGA-05-4424-01 19 53572675 53572675 C A ZNF160 Missense_Mutation p.C371F 0.20 deleterious(0) probably_damaging(0.998) TCGA-05-4424-01 19 53611692 53611692 G A ZNF415 Missense_Mutation p.R536C 0.17 tolerated(0.23) benign(0.33) TCGA-05-4424-01 19 53668214 53668214 C G ZNF665 Missense_Mutation p.G510A 0.04 deleterious(0.01) probably_damaging(0.994) TCGA-05-4424-01 19 53762734 53762734 G T VN1R2 Missense_Mutation p.C369F 0.17 tolerated(0.06) benign(0.011) TCGA-05-4424-01 19 53885745 53885745 A G ZNF525 3'UTR 0.27 TCGA-05-4424-01 19 53889506 53889506 C G ZNF525 3'Flank 0.11 TCGA-05-4424-01 19 53911608 53911608 G T ZNF765 Missense_Mutation p.G267V 0.26 deleterious(0.01) possibly_damaging(0.735) TCGA-05-4424-01 19 54177546 54177546 C A MIR498 RNA 0.15 TCGA-05-4424-01 19 54191737 54191737 C G MIR1283-1 RNA 0.05 TCGA-05-4424-01 19 54803140 54803140 C A LILRA3 Silent p.R179R 0.15 TCGA-05-4424-01 19 55087569 55087569 G T LILRA2 Silent p.V416V 0.13 TCGA-05-4424-01 19 55715354 55715354 A T PTPRH Missense_Mutation p.W228R 0.13 unknown(0) TCGA-05-4424-01 19 56320398 56320398 C T NLRP11 Silent p.V526V 0.17 TCGA-05-4424-01 19 56382348 56382348 G T NLRP4 Missense_Mutation p.C837F 0.19 tolerated(0.7) benign(0) TCGA-05-4424-01 19 56539670 56539670 C G NLRP5 Missense_Mutation p.L691V 0.09 deleterious(0) possibly_damaging(0.904) TCGA-05-4424-01 19 56701607 56701607 C A ZSCAN5B Silent p.V359V 0.18 TCGA-05-4424-01 19 57132765 57132765 G C ZNF71 Missense_Mutation p.G37A 0.17 tolerated(0.53) benign(0.002) TCGA-05-4424-01 19 57133628 57133628 C T ZNF71 Missense_Mutation p.P325S 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-05-4424-01 19 57326145 57326145 C A PEG3 Missense_Mutation p.G1222V 0.25 tolerated(0.06) possibly_damaging(0.864) TCGA-05-4424-01 19 57327947 57327947 A G PEG3 Silent p.Y621Y 0.21 TCGA-05-4424-01 19 57862888 57862888 G C ZNF304 5'UTR 0.14 TCGA-05-4424-01 19 58187554 58187554 C T ZSCAN4 Missense_Mutation p.S14F 0.15 deleterious(0.02) benign(0.071) TCGA-05-4424-01 19 58367546 58367546 G C CTD-2583A14.10 Missense_Mutation p.Q36H 0.03 deleterious(0.01) probably_damaging(0.995) TCGA-05-4424-01 19 58369964 58369964 G C CTD-2583A14.10 Missense_Mutation p.D62H 0.05 tolerated(0.05) probably_damaging(0.952) TCGA-05-4424-01 19 58864328 58864328 G T A1BG Silent p.T102T 0.13 TCGA-05-4424-01 19 6921873 6921873 C T EMR1 Silent p.I590I 0.07 TCGA-05-4424-01 19 8601438 8601438 T G MYO1F Silent p.R615R 0.17 TCGA-05-4424-01 19 9049864 9049864 A G MUC16 Silent p.S10589S 0.17 TCGA-05-4424-01 19 9059267 9059267 T A MUC16 Silent p.P9393P 0.21 TCGA-05-4424-01 19 9071588 9071589 - A MUC16 Frame_Shift_Ins p.L5286Ffs*116 0.16 TCGA-05-4424-01 1 100568609 100568609 C A SASS6 Missense_Mutation p.G526W 0.32 deleterious(0) probably_damaging(0.936) TCGA-05-4424-01 1 104114861 104114861 A G AMY2B Missense_Mutation p.R100G 0.12 deleterious(0) probably_damaging(0.999) TCGA-05-4424-01 1 109191437 109191437 G T HENMT1 Silent p.V311V 0.15 TCGA-05-4424-01 1 111663261 111663261 C A DRAM2 Missense_Mutation p.G132C 0.22 deleterious(0) probably_damaging(1) TCGA-05-4424-01 1 111861169 111861169 G A CHIA Missense_Mutation p.V262I 0.09 tolerated(0.12) benign(0.263) TCGA-05-4424-01 1 11855339 11855339 C T MTHFR Missense_Mutation p.V283M 0.09 tolerated(0.08) benign(0.418) TCGA-05-4424-01 1 119925580 119925580 G T HAO2 Silent p.V58V 0.17 TCGA-05-4424-01 1 120459031 120459031 C A NOTCH2 Missense_Mutation p.R2105L 0.19 deleterious(0) benign(0.441) TCGA-05-4424-01 1 1231132 1231132 C A ACAP3 Silent p.V563V 0.19 TCGA-05-4424-01 1 12853569 12853569 C A PRAMEF1 Missense_Mutation p.P65T 0.14 deleterious(0) probably_damaging(0.999) TCGA-05-4424-01 1 145273425 145273425 C T NOTCH2NL Silent p.T93T 0.06 TCGA-05-4424-01 1 146684991 146684991 C A FMO5 Missense_Mutation p.G124V 0.03 deleterious(0) probably_damaging(0.999) TCGA-05-4424-01 1 149902485 149902485 C A MTMR11 Intron 0.13 TCGA-05-4424-01 1 149903316 149903316 G T MTMR11 Missense_Mutation p.R376S 0.24 tolerated(0.79) benign(0.053) TCGA-05-4424-01 1 151314798 151314798 C T RFX5 Missense_Mutation p.R572K 0.04 tolerated_low_confidence(0.13) benign(0.01) TCGA-05-4424-01 1 151314850 151314850 C T RFX5 Missense_Mutation p.E555K 0.06 deleterious_low_confidence(0.01) benign(0.383) TCGA-05-4424-01 1 151991244 151991244 C G NBPF18P RNA 0.13 TCGA-05-4424-01 1 152057310 152057310 A G TCHHL1 3'UTR 0.23 TCGA-05-4424-01 1 152280610 152280611 - A FLG Frame_Shift_Ins p.G2251Vfs*7 0.09 TCGA-05-4424-01 1 152280761 152280761 C A FLG Missense_Mutation p.D2201Y 0.10 probably_damaging(0.961) TCGA-05-4424-01 1 152285119 152285119 G C FLG Missense_Mutation p.T748S 0.14 benign(0.055) TCGA-05-4424-01 1 152324299 152324299 G T FLG2 Missense_Mutation p.S1988Y 0.27 possibly_damaging(0.831) TCGA-05-4424-01 1 152382233 152382233 C A CRNN Missense_Mutation p.W442L 0.26 deleterious(0) probably_damaging(0.985) TCGA-05-4424-01 1 152733726 152733726 G C KPRP Silent p.R554R 0.09 TCGA-05-4424-01 1 153004868 153004868 T C SPRR1B Missense_Mutation p.L16P 0.16 tolerated(0.38) unknown(0) TCGA-05-4424-01 1 153043118 153043118 C A SPRR2B Missense_Mutation p.K66N 0.27 deleterious_low_confidence(0) unknown(0) TCGA-05-4424-01 1 153177535 153177535 C A LELP1 3'UTR 0.54 TCGA-05-4424-01 1 154544067 154544067 C T CHRNB2 Silent p.F256F 0.16 TCGA-05-4424-01 1 155851088 155851088 C A SYT11 Missense_Mutation p.S362Y 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-05-4424-01 1 156846229 156846229 T A NTRK1 Missense_Mutation p.F557Y 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-05-4424-01 1 156846230 156846230 C T NTRK1 Silent p.F557F 0.10 TCGA-05-4424-01 1 158153982 158153982 G T CD1D 3'UTR 0.21 TCGA-05-4424-01 1 158368994 158368994 G T OR10T2 Nonsense_Mutation p.S88* 0.27 TCGA-05-4424-01 1 158612641 158612641 G A SPTA1 Missense_Mutation p.A1523V 0.05 deleterious(0) probably_damaging(1) TCGA-05-4424-01 1 158618322 158618322 C - SPTA1 Frame_Shift_Del p.D1231Tfs*9 0.22 TCGA-05-4424-01 1 158637767 158637767 A G SPTA1 Missense_Mutation p.I640T 0.13 deleterious(0) possibly_damaging(0.45) TCGA-05-4424-01 1 158687521 158687521 G T OR6K3 Missense_Mutation p.P129T 0.09 deleterious(0) possibly_damaging(0.824) TCGA-05-4424-01 1 159175730 159175730 G T DARC Silent p.L169L 0.24 TCGA-05-4424-01 1 160011198 160011198 G T KCNJ10 Silent p.R375R 0.23 TCGA-05-4424-01 1 160209744 160209744 G A DCAF8 Missense_Mutation p.P156S 0.22 tolerated(0.52) benign(0.001) TCGA-05-4424-01 1 160784514 160784514 C G LY9 Missense_Mutation p.S345R 0.17 tolerated(1) benign(0.001) TCGA-05-4424-01 1 161198067 161198067 G T TOMM40L Silent p.G192G 0.17 TCGA-05-4424-01 1 161519571 161519571 C A FCGR3A Missense_Mutation p.G22W 0.13 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-05-4424-01 1 161596073 161596073 C G FCGR3B Missense_Mutation p.D183H 0.10 tolerated(0.09) benign(0.016) TCGA-05-4424-01 1 171076937 171076937 G T FMO3 Missense_Mutation p.G148V 0.25 deleterious(0) probably_damaging(0.999) TCGA-05-4424-01 1 171759628 171759628 G T METTL13 Missense_Mutation p.R449L 0.24 tolerated(0.21) benign(0.049) TCGA-05-4424-01 1 172376984 172376984 G A DNM3 3'UTR 0.06 TCGA-05-4424-01 1 174244990 174244990 A G RABGAP1L Missense_Mutation p.Y358C 0.04 tolerated(0.22) benign(0.001) TCGA-05-4424-01 1 174274250 174274250 G A RABGAP1L Missense_Mutation p.D484N 0.06 tolerated(0.08) possibly_damaging(0.638) TCGA-05-4424-01 1 176525883 176525883 G C PAPPA2 Missense_Mutation p.G142A 0.22 tolerated_low_confidence(0.12) benign(0.197) TCGA-05-4424-01 1 176679222 176679222 C A PAPPA2 Nonsense_Mutation p.Y1187* 0.23 TCGA-05-4424-01 1 176845691 176845691 C A ASTN1 Missense_Mutation p.D1149Y 0.17 deleterious(0) probably_damaging(0.996) TCGA-05-4424-01 1 179087719 179087719 C G ABL2 Intron 0.28 TCGA-05-4424-01 1 180832881 180832881 G T XPR1 Silent p.L513L 0.27 TCGA-05-4424-01 1 181765848 181765848 C G CACNA1E Missense_Mutation p.R2085G 0.21 deleterious(0.01) possibly_damaging(0.63) TCGA-05-4424-01 1 184681671 184681671 C G EDEM3 Missense_Mutation p.E478Q 0.07 tolerated(0.14) benign(0.213) TCGA-05-4424-01 1 186643804 186643804 C A PTGS2 Missense_Mutation p.R499L 0.15 tolerated(0.26) benign(0.068) TCGA-05-4424-01 1 186646911 186646911 C G PTGS2 Missense_Mutation p.R170T 0.06 deleterious(0) probably_damaging(1) TCGA-05-4424-01 1 190067232 190067232 C A BRINP3 Silent p.V739V 0.27 TCGA-05-4424-01 1 190203503 190203503 T A BRINP3 Missense_Mutation p.Q241H 0.07 tolerated(0.07) benign(0.003) TCGA-05-4424-01 1 193029186 193029186 C T TROVE2 5'UTR 0.36 TCGA-05-4424-01 1 19571464 19571464 C T EMC1 Silent p.K52K 0.08 TCGA-05-4424-01 1 196227521 196227521 G T KCNT2 Nonsense_Mutation p.S1005* 0.23 TCGA-05-4424-01 1 196285133 196285133 C A KCNT2 Missense_Mutation p.G791V 0.11 deleterious(0) probably_damaging(1) TCGA-05-4424-01 1 196654293 196654293 G T CFH Missense_Mutation p.G297V 0.30 deleterious(0) probably_damaging(0.997) TCGA-05-4424-01 1 197091598 197091598 T G ASPM Missense_Mutation p.Q1173P 0.24 deleterious(0) probably_damaging(0.968) TCGA-05-4424-01 1 200817728 200817728 G T CAMSAP2 Nonsense_Mutation p.G611* 0.22 TCGA-05-4424-01 1 200959110 200959110 C A KIF21B Missense_Mutation p.R1031L 0.11 deleterious(0) probably_damaging(0.991) TCGA-05-4424-01 1 201437670 201437670 T C PHLDA3 Missense_Mutation p.E82G 0.05 deleterious(0) probably_damaging(0.994) TCGA-05-4424-01 1 202777823 202777823 G T KDM5B 5'UTR 0.17 TCGA-05-4424-01 1 203138136 203138136 G T MYBPH Missense_Mutation p.L439I 0.10 deleterious(0) probably_damaging(0.999) TCGA-05-4424-01 1 203816441 203816441 C T ZC3H11A Missense_Mutation p.S391F 0.10 tolerated(0.12) benign(0.018) TCGA-05-4424-01 1 206667311 206667311 C T IKBKE Missense_Mutation p.R702C 0.11 tolerated(0.19) benign(0.004) TCGA-05-4424-01 1 207697102 207697102 T A CR1 Missense_Mutation p.S212T 0.27 tolerated(0.65) possibly_damaging(0.759) TCGA-05-4424-01 1 207896969 207896969 A C CR1L Missense_Mutation p.H550P 0.13 tolerated(0.26) benign(0) TCGA-05-4424-01 1 215848726 215848726 G T USH2A Missense_Mutation p.S4176Y 0.19 possibly_damaging(0.905) TCGA-05-4424-01 1 215960039 215960039 C A USH2A Missense_Mutation p.G3454W 0.24 probably_damaging(0.992) TCGA-05-4424-01 1 216251676 216251676 A T USH2A Missense_Mutation p.F1776Y 0.03 benign(0.213) TCGA-05-4424-01 1 216258133 216258133 C G USH2A Missense_Mutation p.D1692H 0.06 possibly_damaging(0.738) TCGA-05-4424-01 1 216371752 216371752 A T USH2A Nonsense_Mutation p.L1329* 0.05 TCGA-05-4424-01 1 228003815 228003815 G T PRSS38 Missense_Mutation p.G58V 0.16 deleterious(0) probably_damaging(0.999) TCGA-05-4424-01 1 228003884 228003884 G T PRSS38 Missense_Mutation p.G81V 0.20 deleterious(0) probably_damaging(0.994) TCGA-05-4424-01 1 228495862 228495862 G T OBSCN Missense_Mutation p.D5130Y 0.34 possibly_damaging(0.683) TCGA-05-4424-01 1 228595873 228595873 G A TRIM17 3'UTR 0.05 TCGA-05-4424-01 1 231406679 231406679 G T GNPAT Silent p.L485L 0.25 TCGA-05-4424-01 1 23191473 23191473 C G EPHB2 Silent p.V357V 0.09 TCGA-05-4424-01 1 23191648 23191648 G T EPHB2 Missense_Mutation p.D416Y 0.19 deleterious(0.03) possibly_damaging(0.689) TCGA-05-4424-01 1 234743041 234743041 G T IRF2BP2 Missense_Mutation p.Q536K 0.14 tolerated(0.1) possibly_damaging(0.678) TCGA-05-4424-01 1 235976294 235976294 G A LYST Missense_Mutation p.P87L 0.17 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-05-4424-01 1 238049056 238049056 C G ZP4 Missense_Mutation p.D324H 0.22 deleterious(0) probably_damaging(1) TCGA-05-4424-01 1 241094014 241094014 G T RGS7 Intron 0.16 TCGA-05-4424-01 1 241099998 241099998 G T RGS7 Missense_Mutation p.L79I 0.15 tolerated(0.36) probably_damaging(0.979) TCGA-05-4424-01 1 241731862 241731862 C A KMO Missense_Mutation p.S291Y 0.10 tolerated(0.08) possibly_damaging(0.596) TCGA-05-4424-01 1 242264009 242264009 G C PLD5 Missense_Mutation p.R439G 0.06 deleterious(0.01) possibly_damaging(0.762) TCGA-05-4424-01 1 243419402 243419402 G T SDCCAG8 5'UTR 0.19 TCGA-05-4424-01 1 244716057 244716057 G T C1orf101 Missense_Mutation p.D324Y 0.09 deleterious(0) possibly_damaging(0.839) TCGA-05-4424-01 1 245848964 245848964 G A KIF26B Silent p.V893V 0.18 TCGA-05-4424-01 1 247902274 247902274 C T OR14K1 Missense_Mutation p.R120C 0.06 deleterious(0.02) benign(0.258) TCGA-05-4424-01 1 248436683 248436683 G T OR2T33 Nonsense_Mutation p.S145* 0.12 TCGA-05-4424-01 1 248487751 248487751 C A OR2M7 Missense_Mutation p.M40I 0.23 tolerated(0.39) benign(0.001) TCGA-05-4424-01 1 248738024 248738024 G A OR2T34 Missense_Mutation p.T12I 0.05 deleterious(0.01) benign(0.178) TCGA-05-4424-01 1 248789921 248789921 C A OR2T11 Missense_Mutation p.S170I 0.19 deleterious(0.02) benign(0.01) TCGA-05-4424-01 1 33272110 33272110 C T YARS Silent p.L161L 0.07 TCGA-05-4424-01 1 34401436 34401436 C A CSMD2 Missense_Mutation p.G173C 0.20 deleterious(0) probably_damaging(0.999) TCGA-05-4424-01 1 43308638 43308638 C T ERMAP Missense_Mutation p.S388F 0.05 tolerated(0.08) benign(0.443) TCGA-05-4424-01 1 54606877 54606877 G T CDCP2 Silent p.G219G 0.18 TCGA-05-4424-01 1 65851517 65851517 G T DNAJC6 Missense_Mutation p.C308F 0.13 deleterious(0) probably_damaging(1) TCGA-05-4424-01 1 66458629 66458629 G A PDE4B Intron 0.07 TCGA-05-4424-01 1 67303405 67303405 T A WDR78 Silent p.I523I 0.15 TCGA-05-4424-01 1 67816592 67816592 T C IL12RB2 Missense_Mutation p.Y360H 0.14 deleterious(0) probably_damaging(0.992) TCGA-05-4424-01 1 71534972 71534972 C A ZRANB2 Missense_Mutation p.G253W 0.26 deleterious_low_confidence(0) unknown(0) TCGA-05-4424-01 1 76398013 76398013 G A ASB17 5'UTR 0.08 TCGA-05-4424-01 1 78479070 78479070 C G DNAJB4 Missense_Mutation p.R183G 0.26 deleterious(0) possibly_damaging(0.861) TCGA-05-4424-01 1 84385411 84385411 C G TTLL7 Missense_Mutation p.E491Q 0.13 tolerated(0.16) probably_damaging(0.968) TCGA-05-4424-01 1 85666082 85666082 G A SYDE2 Silent p.L200L 0.07 TCGA-05-4424-01 1 89849314 89849314 G A GBP6 Splice_Site p.X490_splice 0.08 TCGA-05-4424-01 1 9009428 9009428 C A CA6 Silent p.S62S 0.30 TCGA-05-4424-01 1 91405710 91405710 T A ZNF644 Missense_Mutation p.T401S 0.24 tolerated(0.41) benign(0.081) TCGA-05-4424-01 20 10286857 10286857 C A SNAP25 3'UTR 0.33 TCGA-05-4424-01 20 16316589 16316589 C T KIF16B Silent p.L416L 0.19 TCGA-05-4424-01 20 1961039 1961039 C A PDYN Missense_Mutation p.R232L 0.09 deleterious(0) probably_damaging(0.95) TCGA-05-4424-01 20 23065301 23065301 G T CD93 Missense_Mutation p.P510H 0.22 tolerated(0.23) benign(0.179) TCGA-05-4424-01 20 2841893 2841893 G A VPS16 Missense_Mutation p.C259Y 0.20 deleterious(0) possibly_damaging(0.558) TCGA-05-4424-01 20 31671171 31671171 A T BPIFB4 Splice_Site p.X57_splice 0.11 TCGA-05-4424-01 20 32298426 32298426 C T PXMP4 Missense_Mutation p.A104T 0.08 tolerated(0.25) benign(0.228) TCGA-05-4424-01 20 3652837 3652837 C G ADAM33 Missense_Mutation p.C514S 0.48 deleterious(0) probably_damaging(1) TCGA-05-4424-01 20 37357066 37357066 G T SLC32A1 Silent p.A454A 0.34 TCGA-05-4424-01 20 37580398 37580398 G C FAM83D Silent p.R361R 0.23 TCGA-05-4424-01 20 3781942 3781942 C T CDC25B Silent p.S249S 0.05 TCGA-05-4424-01 20 42744380 42744380 C G JPH2 Silent p.L645L 0.21 TCGA-05-4424-01 20 43927056 43927056 G A MATN4 Missense_Mutation p.R394C 0.18 probably_damaging(1) TCGA-05-4424-01 20 47364366 47364366 G T PREX1 Missense_Mutation p.L91I 0.28 tolerated(1) benign(0.032) TCGA-05-4424-01 20 47888037 47888037 C T ZNFX1 Silent p.R104R 0.15 TCGA-05-4424-01 20 52193386 52193386 G C ZNF217 Silent p.L639L 0.04 TCGA-05-4424-01 20 56735845 56735845 A T C20orf85 Silent p.R127R 0.08 TCGA-05-4424-01 20 57767923 57767923 C A ZNF831 Missense_Mutation p.Q617K 0.29 deleterious(0) probably_damaging(0.989) TCGA-05-4424-01 20 58519045 58519045 C G FAM217B Missense_Mutation p.S16C 0.08 deleterious(0.03) possibly_damaging(0.885) TCGA-05-4424-01 20 58559697 58559697 A T CDH26 Missense_Mutation p.Q182L 0.07 tolerated(0.11) benign(0.117) TCGA-05-4424-01 20 61513083 61513083 C A DIDO1 Nonsense_Mutation p.E1409* 0.09 TCGA-05-4424-01 20 9352970 9352970 A T PLCB4 Silent p.T202T 0.06 TCGA-05-4424-01 20 9368109 9368109 G T PLCB4 Splice_Site p.X355_splice 0.44 TCGA-05-4424-01 20 9546931 9546931 G A PAK7 Missense_Mutation p.S364L 0.04 tolerated(0.37) benign(0) TCGA-05-4424-01 21 41450679 41450679 C A DSCAM Missense_Mutation p.R1549L 0.26 deleterious(0) probably_damaging(0.937) TCGA-05-4424-01 21 41719760 41719760 G T DSCAM Silent p.R349R 0.34 TCGA-05-4424-01 21 42718992 42718992 G T FAM3B Silent p.L150L 0.37 TCGA-05-4424-01 21 43838595 43838595 C T UBASH3A Missense_Mutation p.T308M 0.10 tolerated(0.15) probably_damaging(0.951) TCGA-05-4424-01 21 45978250 45978250 G T KRTAP10-3 Missense_Mutation p.P117T 0.35 tolerated(0.06) unknown(0) TCGA-05-4424-01 21 46086610 46086610 C G KRTAP12-2 Missense_Mutation p.C65S 0.35 tolerated(0.1) benign(0.415) TCGA-05-4424-01 21 47773118 47773118 G A PCNT Silent p.L519L 0.09 TCGA-05-4424-01 21 47819700 47819700 G T PCNT Missense_Mutation p.G1594V 0.06 benign(0) TCGA-05-4424-01 22 19376025 19376025 G C HIRA Missense_Mutation p.S330C 0.07 deleterious(0) probably_damaging(0.991) TCGA-05-4424-01 22 25597356 25597356 C T CRYBB3 5'UTR 0.17 TCGA-05-4424-01 22 32792114 32792114 C T RTCB Missense_Mutation p.A313T 0.29 deleterious(0) probably_damaging(0.999) TCGA-05-4424-01 22 37770693 37770693 C A ELFN2 Silent p.S294S 0.30 TCGA-05-4424-01 2 103414427 103414427 A T TMEM182 Missense_Mutation p.Y146F 0.10 deleterious(0.03) probably_damaging(0.973) TCGA-05-4424-01 2 119752128 119752128 G T MARCO 3'UTR 0.44 TCGA-05-4424-01 2 122106166 122106166 C A CLASP1 Missense_Mutation p.M1445I 0.08 deleterious(0.05) probably_damaging(0.989) TCGA-05-4424-01 2 128936041 128936041 G - UGGT1 Splice_Site p.X1239_splice 0.13 TCGA-05-4424-01 2 132021922 132021922 G T POTEE Missense_Mutation p.C965F 0.17 tolerated_low_confidence(0.05) possibly_damaging(0.533) TCGA-05-4424-01 2 132235960 132235960 G A TUBA3D Splice_Site p.X76_splice 0.20 TCGA-05-4424-01 2 135965138 135965138 C G ZRANB3 Missense_Mutation p.E959Q 0.07 tolerated(0.09) benign(0.373) TCGA-05-4424-01 2 141215131 141215131 G T LRP1B Missense_Mutation p.R3239S 0.07 benign(0.353) TCGA-05-4424-01 2 141609221 141609221 C A LRP1B Nonsense_Mutation p.E1571* 0.09 TCGA-05-4424-01 2 141762977 141762977 C A LRP1B Missense_Mutation p.L810F 0.17 possibly_damaging(0.587) TCGA-05-4424-01 2 141816619 141816619 C T LRP1B Missense_Mutation p.R414K 0.05 benign(0) TCGA-05-4424-01 2 143718265 143718265 C T KYNU Silent p.L219L 0.06 TCGA-05-4424-01 2 144714812 144714812 C A GTDC1 Missense_Mutation p.M360I 0.10 tolerated(0.18) benign(0.403) TCGA-05-4424-01 2 154996906 154996906 C T GALNT13 Missense_Mutation p.P67S 0.24 tolerated(0.09) benign(0.009) TCGA-05-4424-01 2 155098649 155098649 A T GALNT13 Missense_Mutation p.N140Y 0.23 deleterious(0) possibly_damaging(0.467) TCGA-05-4424-01 2 159519520 159519520 G C PKP4 Missense_Mutation p.E775Q 0.30 tolerated(0.22) possibly_damaging(0.782) TCGA-05-4424-01 2 166767876 166767876 C T TTC21B Missense_Mutation p.A808T 0.06 deleterious(0) probably_damaging(0.938) TCGA-05-4424-01 2 168100183 168100183 G A XIRP2 Missense_Mutation p.D761N 0.11 probably_damaging(1) TCGA-05-4424-01 2 170092556 170092556 C A LRP2 Missense_Mutation p.D1572Y 0.16 probably_damaging(0.996) TCGA-05-4424-01 2 172016919 172016919 C G TLK1 Missense_Mutation p.S7T 0.12 deleterious_low_confidence(0) benign(0.027) TCGA-05-4424-01 2 172334560 172334560 G T DCAF17 Missense_Mutation p.D416Y 0.32 tolerated(0.07) probably_damaging(1) TCGA-05-4424-01 2 172644379 172644379 G A SLC25A12 Missense_Mutation p.T555M 0.11 deleterious(0) probably_damaging(0.984) TCGA-05-4424-01 2 177036321 177036321 G T HOXD3 Silent p.L206L 0.13 TCGA-05-4424-01 2 179411926 179411926 G T TTN Silent p.G31442G 0.13 TCGA-05-4424-01 2 179584928 179584928 A G TTN Missense_Mutation p.L7814S 0.05 TCGA-05-4424-01 2 179594626 179594626 C A TTN Missense_Mutation p.R6118S 0.20 TCGA-05-4424-01 2 179597036 179597036 G T TTN Missense_Mutation p.L5554M 0.10 TCGA-05-4424-01 2 179611894 179611894 C G TTN Intron 0.29 TCGA-05-4424-01 2 179615813 179615813 T A TTN Intron 0.17 TCGA-05-4424-01 2 179986599 179986599 T A SESTD1 Missense_Mutation p.N447I 0.14 tolerated(0.19) benign(0.06) TCGA-05-4424-01 2 185801785 185801785 G T ZNF804A Missense_Mutation p.K554N 0.09 deleterious(0.01) benign(0.037) TCGA-05-4424-01 2 186672931 186672931 C A FSIP2 Missense_Mutation p.P6389T 0.08 probably_damaging(0.97) TCGA-05-4424-01 2 187366001 187366001 T G ZC3H15 Silent p.G97G 0.28 TCGA-05-4424-01 2 188225374 188225374 G T CALCRL Silent p.A244A 0.11 TCGA-05-4424-01 2 188245443 188245443 G T CALCRL Missense_Mutation p.Q86K 0.06 tolerated(0.06) benign(0.233) TCGA-05-4424-01 2 189599405 189599405 C T DIRC1 Silent p.L81L 0.04 TCGA-05-4424-01 2 191792198 191792198 T G GLS Missense_Mutation p.F472C 0.18 deleterious(0) probably_damaging(0.998) TCGA-05-4424-01 2 1926362 1926362 C T MYT1L Silent p.S393S 0.17 TCGA-05-4424-01 2 1926736 1926736 C A MYT1L Missense_Mutation p.A269S 0.11 tolerated_low_confidence(0.1) probably_damaging(0.999) TCGA-05-4424-01 2 196740521 196740521 C A DNAH7 Missense_Mutation p.G2055V 0.25 deleterious(0) probably_damaging(1) TCGA-05-4424-01 2 198436887 198436887 G T RFTN2 Missense_Mutation p.R451S 0.11 tolerated(0.64) benign(0.003) TCGA-05-4424-01 2 202050751 202050751 A G CASP10 Missense_Mutation p.Y84C 0.20 deleterious(0.04) benign(0.415) TCGA-05-4424-01 2 202074230 202074230 G C CASP10 Missense_Mutation p.E454Q 0.11 tolerated(0.66) benign(0.059) TCGA-05-4424-01 2 204736146 204736146 C A CTLA4 Missense_Mutation p.A168E 0.04 deleterious(0.02) benign(0.19) TCGA-05-4424-01 2 209188940 209188940 A T PIKFYVE Silent p.T755T 0.04 TCGA-05-4424-01 2 209307110 209307110 T A PTH2R Missense_Mutation p.Y145N 0.23 tolerated(0.15) possibly_damaging(0.71) TCGA-05-4424-01 2 211457611 211457611 G - CPS1 Frame_Shift_Del p.M371Ifs*21 0.18 TCGA-05-4424-01 2 21234901 21234901 G T APOB Missense_Mutation p.S1613R 0.19 benign(0.143) TCGA-05-4424-01 2 215890417 215890417 G T ABCA12 Missense_Mutation p.P423T 0.15 tolerated(0.09) benign(0.06) TCGA-05-4424-01 2 216272028 216272028 A G FN1 Silent p.Y845Y 0.09 TCGA-05-4424-01 2 216861126 216861126 C G MREG Missense_Mutation p.W53S 0.06 deleterious(0) probably_damaging(0.999) TCGA-05-4424-01 2 216960771 216960771 C T TMEM169 Silent p.L29L 0.26 TCGA-05-4424-01 2 218695090 218695090 C T TNS1 Missense_Mutation p.E1008K 0.25 tolerated(0.24) benign(0.092) TCGA-05-4424-01 2 219754887 219754887 G T WNT10A Missense_Mutation p.K186N 0.11 tolerated(0.12) possibly_damaging(0.864) TCGA-05-4424-01 2 220164863 220164863 G T PTPRN Missense_Mutation p.P427H 0.15 tolerated(0.06) benign(0.289) TCGA-05-4424-01 2 220473845 220473845 C T STK11IP Silent p.P623P 0.64 TCGA-05-4424-01 2 220477938 220477938 G T STK11IP Missense_Mutation p.G854V 0.32 deleterious(0) possibly_damaging(0.714) TCGA-05-4424-01 2 223158868 223158868 C G PAX3 Intron 0.09 TCGA-05-4424-01 2 228846568 228846568 A T SPHKAP Missense_Mutation p.D1656E 0.26 tolerated(0.14) benign(0.168) TCGA-05-4424-01 2 234581233 234581233 T G UGT1A9 Nonsense_Mutation p.L218* 0.13 TCGA-05-4424-01 2 234591242 234591242 G T UGT1A7 Missense_Mutation p.C220F 0.31 tolerated(0.06) probably_damaging(1) TCGA-05-4424-01 2 234669362 234669362 C A UGT1A8 Intron 0.09 TCGA-05-4424-01 2 238275710 238275710 T C COL6A3 Missense_Mutation p.N1707S 0.11 benign(0.173) TCGA-05-4424-01 2 238726120 238726120 G T RBM44 Missense_Mutation p.Q187H 0.33 deleterious(0.02) probably_damaging(0.996) TCGA-05-4424-01 2 239237850 239237850 G C TRAF3IP1 Missense_Mutation p.R261T 0.13 deleterious(0.04) possibly_damaging(0.537) TCGA-05-4424-01 2 240969526 240969526 C G OR6B2 Silent p.L107L 0.18 TCGA-05-4424-01 2 26203366 26203369 GCTG A KIF3C In_Frame_Del p.A473_A474delinsV 0.13 TCGA-05-4424-01 2 27446822 27446822 G T CAD Missense_Mutation p.D345Y 0.22 deleterious(0) probably_damaging(1) TCGA-05-4424-01 2 27803250 27803250 C G C2orf16 Missense_Mutation p.Q1271E 0.10 deleterious(0.01) benign(0.013) TCGA-05-4424-01 2 27805001 27805001 C G C2orf16 Silent p.L1854L 0.14 TCGA-05-4424-01 2 31605971 31605971 G T XDH Missense_Mutation p.L312M 0.10 deleterious(0.03) possibly_damaging(0.777) TCGA-05-4424-01 2 36744595 36744595 G A CRIM1 Missense_Mutation p.G706R 0.05 deleterious(0) probably_damaging(1) TCGA-05-4424-01 2 39414835 39414835 C A CDKL4 Missense_Mutation p.R223I 0.29 deleterious(0) probably_damaging(0.977) TCGA-05-4424-01 2 54122796 54122796 T C PSME4 Missense_Mutation p.I1256V 0.13 tolerated(0.47) benign(0.001) TCGA-05-4424-01 2 61304276 61304276 G - KIAA1841 Frame_Shift_Del p.C218Lfs*6 0.23 TCGA-05-4424-01 2 61441511 61441511 T A USP34 Missense_Mutation p.E2789V 0.13 deleterious(0) probably_damaging(0.999) TCGA-05-4424-01 2 64778627 64778627 C T AFTPH Nonsense_Mutation p.R7* 0.04 TCGA-05-4424-01 2 68607891 68607891 C A PLEK Missense_Mutation p.H79N 0.18 deleterious(0.02) possibly_damaging(0.719) TCGA-05-4424-01 2 6990087 6990087 T A CMPK2 Missense_Mutation p.Q415L 0.27 tolerated(0.07) benign(0.01) TCGA-05-4424-01 2 7154848 7154848 G T RNF144A Missense_Mutation p.E82D 0.24 tolerated(0.21) benign(0.06) TCGA-05-4424-01 2 71829926 71829926 C T DYSF Silent p.I1316I 0.21 TCGA-05-4424-01 2 73315269 73315269 C - RAB11FIP5 Frame_Shift_Del p.A493Pfs*20 0.28 TCGA-05-4424-01 2 74699773 74699773 C A MRPL53 Missense_Mutation p.L5F 0.19 tolerated(0.18) benign(0.169) TCGA-05-4424-01 2 74750592 74750592 C T DQX1 Missense_Mutation p.V297I 0.22 tolerated(0.31) benign(0.008) TCGA-05-4424-01 2 79255376 79255376 C T REG3G Missense_Mutation p.P168S 0.04 tolerated(0.11) probably_damaging(0.991) TCGA-05-4424-01 2 84518273 84518273 C G FUNDC2P2 RNA 0.33 TCGA-05-4424-01 2 8822264 8822264 C T ID2 5'UTR 0.38 TCGA-05-4424-01 2 8928836 8928836 T - KIDINS220 Frame_Shift_Del p.K576Nfs*2 0.12 TCGA-05-4424-01 2 89399788 89399788 G A IGKV1-16 Silent p.L14L 0.11 TCGA-05-4424-01 2 89976296 89976296 C G IGKV2D-30 Missense_Mutation p.T56S 0.29 tolerated(0.25) benign(0.063) TCGA-05-4424-01 2 90139511 90139511 T G IGKV1D-16 Silent p.T94T 0.11 TCGA-05-4424-01 3 100976422 100976422 C G IMPG2 Silent p.L368L 0.22 TCGA-05-4424-01 3 111603652 111603652 G T PHLDB2 Missense_Mutation p.S243I 0.22 deleterious(0) benign(0.017) TCGA-05-4424-01 3 111686524 111686524 G T PHLDB2 Splice_Site p.X1057_splice 0.10 TCGA-05-4424-01 3 111860042 111860042 G T SLC9C1 3'UTR 0.12 TCGA-05-4424-01 3 121417301 121417301 T A GOLGB1 Missense_Mutation p.E690V 0.11 probably_damaging(0.997) TCGA-05-4424-01 3 12560662 12560662 G T TSEN2 Silent p.V355V 0.22 TCGA-05-4424-01 3 12950781 12950781 C A IQSEC1 Missense_Mutation p.R871M 0.17 deleterious(0) probably_damaging(0.995) TCGA-05-4424-01 3 130284269 130284269 C A COL6A6 Missense_Mutation p.L365M 0.11 tolerated(1) benign(0.029) TCGA-05-4424-01 3 134251670 134251670 G T CEP63 Missense_Mutation p.R123S 0.17 deleterious(0) benign(0.287) TCGA-05-4424-01 3 134884855 134884855 G T EPHB1 Missense_Mutation p.G544V 0.12 tolerated(0.6) possibly_damaging(0.555) TCGA-05-4424-01 3 142188288 142188288 C T ATR Missense_Mutation p.R2148Q 0.06 deleterious(0) probably_damaging(0.989) TCGA-05-4424-01 3 1424739 1424739 G C CNTN6 Missense_Mutation p.R760S 0.23 deleterious(0) benign(0.14) TCGA-05-4424-01 3 148545844 148545844 G C CPB1 Missense_Mutation p.E43Q 0.10 tolerated(0.09) benign(0.013) TCGA-05-4424-01 3 150840592 150840592 T C MED12L Missense_Mutation p.I76T 0.17 deleterious(0) probably_damaging(0.977) TCGA-05-4424-01 3 151105804 151105804 G T MED12L Silent p.L1730L 0.33 TCGA-05-4424-01 3 153840368 153840368 A T ARHGEF26 Missense_Mutation p.K196M 0.18 deleterious_low_confidence(0.01) benign(0.261) TCGA-05-4424-01 3 155628515 155628515 A C GMPS Silent p.A187A 0.14 TCGA-05-4424-01 3 160783209 160783209 C A PPM1L Missense_Mutation p.A198D 0.13 deleterious(0) probably_damaging(0.995) TCGA-05-4424-01 3 164710115 164710115 G T SI Missense_Mutation p.P1638T 0.22 deleterious(0) probably_damaging(0.954) TCGA-05-4424-01 3 164786924 164786924 C A SI Missense_Mutation p.W105C 0.30 deleterious(0) benign(0.205) TCGA-05-4424-01 3 169539777 169539777 T A LRRIQ4 Missense_Mutation p.V23D 0.07 deleterious(0) benign(0.023) TCGA-05-4424-01 3 170002369 170002369 C A PRKCI Missense_Mutation p.D396E 0.19 deleterious(0) benign(0.042) TCGA-05-4424-01 3 186953804 186953804 A G MASP1 Missense_Mutation p.Y619H 0.11 deleterious(0) benign(0.426) TCGA-05-4424-01 3 19554549 19554549 G T KCNH8 Nonsense_Mutation p.E723* 0.23 TCGA-05-4424-01 3 195968943 195968943 T C PCYT1A Missense_Mutation p.Q195R 0.28 deleterious(0) possibly_damaging(0.899) TCGA-05-4424-01 3 196288274 196288274 C A WDR53 Missense_Mutation p.A25S 0.50 tolerated(0.09) benign(0.123) TCGA-05-4424-01 3 35785456 35785456 A T ARPP21 Silent p.A678A 0.06 TCGA-05-4424-01 3 36485037 36485037 G T STAC Missense_Mutation p.R98M 0.22 deleterious(0.02) possibly_damaging(0.867) TCGA-05-4424-01 3 41953149 41953149 C A ULK4 Missense_Mutation p.R300I 0.18 deleterious(0.04) benign(0.14) TCGA-05-4424-01 3 440829 440829 C G CHL1 Nonsense_Mutation p.S1128* 0.14 TCGA-05-4424-01 3 49049969 49049969 A C WDR6 Silent p.G364G 0.05 TCGA-05-4424-01 3 78717633 78717633 C A ROBO1 Splice_Site p.X544_splice 0.21 TCGA-05-4424-01 3 8673789 8673789 G T SSUH2 Missense_Mutation p.L116M 0.18 deleterious(0) possibly_damaging(0.845) TCGA-05-4424-01 3 93619732 93619732 C T PROS1 Missense_Mutation p.A215T 0.27 deleterious(0.01) probably_damaging(0.954) TCGA-05-4424-01 3 93802949 93802949 A T NSUN3 Splice_Site p.X41_splice 0.23 TCGA-05-4424-01 3 97311551 97311551 G T EPHA6 Nonsense_Mutation p.G828* 0.24 TCGA-05-4424-01 3 97887750 97887750 G A OR5H15 Silent p.V69V 0.15 TCGA-05-4424-01 3 98072782 98072782 G T OR5K4 Missense_Mutation p.V29L 0.13 tolerated(1) benign(0.005) TCGA-05-4424-01 4 100208120 100208120 G T ADH1A Missense_Mutation p.T49K 0.26 deleterious(0) benign(0.15) TCGA-05-4424-01 4 103557061 103557061 A G MANBA Silent p.G706G 0.15 TCGA-05-4424-01 4 120107118 120107118 C A MYOZ2 Intron 0.25 TCGA-05-4424-01 4 123664621 123664621 G A BBS12 Missense_Mutation p.R525H 0.10 deleterious(0.01) probably_damaging(1) TCGA-05-4424-01 4 138451465 138451465 C A PCDH18 Missense_Mutation p.G593V 0.07 tolerated(0.4) possibly_damaging(0.456) TCGA-05-4424-01 4 141543672 141543672 T A TBC1D9 Missense_Mutation p.S1160C 0.07 deleterious_low_confidence(0.02) possibly_damaging(0.789) TCGA-05-4424-01 4 146813424 146813424 G C ZNF827 Missense_Mutation p.R413G 0.24 deleterious(0) probably_damaging(0.993) TCGA-05-4424-01 4 155490450 155490450 G T FGB Missense_Mutation p.G317C 0.24 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-05-4424-01 4 15818249 15818249 G A CD38 Missense_Mutation p.V117I 0.04 tolerated(0.5) benign(0.055) TCGA-05-4424-01 4 159158747 159158747 G T TMEM144 Missense_Mutation p.D212Y 0.07 deleterious(0.05) benign(0.41) TCGA-05-4424-01 4 164272464 164272464 G T NPY5R Missense_Mutation p.V347F 0.32 tolerated(0.38) benign(0.073) TCGA-05-4424-01 4 165961467 165961467 C A TRIM60 Silent p.L81L 0.05 TCGA-05-4424-01 4 166924717 166924717 G T TLL1 Missense_Mutation p.Q269H 0.18 deleterious(0.03) benign(0.125) TCGA-05-4424-01 4 172735864 172735864 C A GALNTL6 Missense_Mutation p.Q45K 0.10 tolerated(0.93) benign(0) TCGA-05-4424-01 4 177058693 177058693 G T WDR17 Silent p.G454G 0.17 TCGA-05-4424-01 4 185038113 185038113 T C ENPP6 Missense_Mutation p.K251E 0.22 tolerated(0.22) possibly_damaging(0.559) TCGA-05-4424-01 4 25005757 25005757 T C LGI2 Missense_Mutation p.I318M 0.09 deleterious(0.04) possibly_damaging(0.819) TCGA-05-4424-01 4 37848688 37848688 A T PGM2 Nonsense_Mutation p.K382* 0.07 TCGA-05-4424-01 4 49032935 49032935 T C CWH43 Missense_Mutation p.F489S 0.14 deleterious(0.01) possibly_damaging(0.617) TCGA-05-4424-01 4 52861976 52861976 C G LRRC66 Silent p.L404L 0.24 TCGA-05-4424-01 4 55948769 55948769 C - KDR Frame_Shift_Del p.P1233Lfs*2 0.12 TCGA-05-4424-01 4 6878407 6878407 G A KIAA0232 Missense_Mutation p.G1311R 0.10 deleterious_low_confidence(0.05) benign(0.089) TCGA-05-4424-01 4 69692215 69692215 G T UGT2B10 Missense_Mutation p.G363C 0.30 deleterious(0) probably_damaging(1) TCGA-05-4424-01 4 7062639 7062639 G T GRPEL1 Missense_Mutation p.H202N 0.24 deleterious(0) possibly_damaging(0.53) TCGA-05-4424-01 4 71347134 71347134 C A MUC7 Missense_Mutation p.P225T 0.06 deleterious(0) unknown(0) TCGA-05-4424-01 4 75250497 75250497 C T EREG Missense_Mutation p.S161L 0.13 tolerated(0.19) benign(0.013) TCGA-05-4424-01 4 77065569 77065569 G C NUP54 Missense_Mutation p.S42C 0.11 deleterious(0.04) unknown(0) TCGA-05-4424-01 4 83795890 83795890 G T SEC31A Silent p.I171I 0.06 TCGA-05-4424-01 4 85771119 85771119 G A WDFY3 Silent p.F80F 0.08 TCGA-05-4424-01 4 90857896 90857896 C A MMRN1 Missense_Mutation p.T1022N 0.11 deleterious(0) possibly_damaging(0.873) TCGA-05-4424-01 4 95195932 95195932 G T SMARCAD1 Missense_Mutation p.K572N 0.27 tolerated(0.59) benign(0.003) TCGA-05-4424-01 4 96140288 96140288 C T UNC5C Missense_Mutation p.D493N 0.14 tolerated(0.12) benign(0.027) TCGA-05-4424-01 4 99300218 99300218 G A RAP1GDS1 Missense_Mutation p.D139N 0.22 tolerated(0.14) benign(0.005) TCGA-05-4424-01 4 99341260 99341260 T G RAP1GDS1 Missense_Mutation p.L423R 0.16 deleterious(0) probably_damaging(0.988) TCGA-05-4424-01 5 10288614 10288614 C T CMBL Silent p.G81G 0.33 TCGA-05-4424-01 5 1212464 1212464 G A SLC6A19 Nonsense_Mutation p.W176* 0.16 TCGA-05-4424-01 5 13841843 13841843 T G DNAH5 Silent p.T1814T 0.35 TCGA-05-4424-01 5 139060297 139060297 T C CXXC5 Silent p.G63G 0.19 TCGA-05-4424-01 5 140237074 140237074 G T PCDHA10 Missense_Mutation p.A481S 0.36 tolerated_low_confidence(0.08) possibly_damaging(0.57) TCGA-05-4424-01 5 140250183 140250183 G T PCDHA11 Missense_Mutation p.G499C 0.30 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-05-4424-01 5 140256515 140256515 G C PCDHA12 Missense_Mutation p.K486N 0.07 deleterious_low_confidence(0) benign(0.345) TCGA-05-4424-01 5 140574115 140574115 G A PCDHB10 Missense_Mutation p.D664N 0.45 deleterious_low_confidence(0.01) benign(0.354) TCGA-05-4424-01 5 140574131 140574131 C T PCDHB10 Missense_Mutation p.P669L 0.43 deleterious_low_confidence(0.01) benign(0.286) TCGA-05-4424-01 5 140579376 140579376 A T PCDHB11 Missense_Mutation p.Q10L 0.25 deleterious_low_confidence(0.04) benign(0.022) TCGA-05-4424-01 5 140750198 140750198 C A PCDHGB3 Silent p.P79P 0.30 TCGA-05-4424-01 5 147807061 147807061 G T FBXO38 Missense_Mutation p.G735V 0.35 tolerated_low_confidence(0.15) benign(0.37) TCGA-05-4424-01 5 148709278 148709278 G T AFAP1L1 Silent p.R620R 0.19 TCGA-05-4424-01 5 15935336 15935336 G T FBXL7 Intron 0.05 TCGA-05-4424-01 5 161530945 161530945 G T GABRG2 Nonsense_Mutation p.E268* 0.21 TCGA-05-4424-01 5 169111246 169111246 C A DOCK2 Missense_Mutation p.S218Y 0.33 tolerated(0.49) benign(0.41) TCGA-05-4424-01 5 169116294 169116294 C G DOCK2 Missense_Mutation p.P267R 0.21 deleterious(0) probably_damaging(0.97) TCGA-05-4424-01 5 171488231 171488231 C G STK10 Silent p.L708L 0.29 TCGA-05-4424-01 5 174870079 174870079 G T DRD1 Silent p.A8A 0.30 TCGA-05-4424-01 5 178293996 178293996 A T ZNF354B Silent p.P60P 0.08 TCGA-05-4424-01 5 179201511 179201511 C T MAML1 Missense_Mutation p.S895L 0.10 deleterious(0.04) benign(0.118) TCGA-05-4424-01 5 180056964 180056964 G T FLT4 Missense_Mutation p.P219T 0.19 tolerated(0.39) benign(0.004) TCGA-05-4424-01 5 180419860 180419860 G A BTNL3 Missense_Mutation p.G33R 0.52 deleterious(0) probably_damaging(1) TCGA-05-4424-01 5 19473682 19473682 A T CDH18 Missense_Mutation p.L676M 0.09 tolerated(0.09) probably_damaging(0.999) TCGA-05-4424-01 5 21783481 21783481 A G CDH12 Missense_Mutation p.I460T 0.17 tolerated(0.7) benign(0.074) TCGA-05-4424-01 5 24487964 24487964 G - CDH10 Frame_Shift_Del p.T726Pfs*23 0.08 TCGA-05-4424-01 5 24491727 24491727 C A CDH10 Missense_Mutation p.G612W 0.18 deleterious(0) probably_damaging(0.996) TCGA-05-4424-01 5 24498610 24498610 G T CDH10 Missense_Mutation p.T471K 0.16 deleterious(0.03) probably_damaging(0.991) TCGA-05-4424-01 5 26881634 26881634 C A CDH9 Missense_Mutation p.D661Y 0.17 deleterious(0) probably_damaging(1) TCGA-05-4424-01 5 26885733 26885733 G T CDH9 Silent p.L624L 0.39 TCGA-05-4424-01 5 31317988 31317988 G T CDH6 Silent p.T613T 0.20 TCGA-05-4424-01 5 33751438 33751438 C A ADAMTS12 Intron 0.22 TCGA-05-4424-01 5 33947283 33947283 G A SLC45A2 Silent p.R451R 0.25 TCGA-05-4424-01 5 36677263 36677263 G T SLC1A3 Missense_Mutation p.M279I 0.08 deleterious(0) possibly_damaging(0.803) TCGA-05-4424-01 5 39383025 39383025 G T DAB2 Missense_Mutation p.Q346K 0.04 deleterious(0.04) possibly_damaging(0.624) TCGA-05-4424-01 5 42719541 42719541 C A GHR 3'UTR 0.19 TCGA-05-4424-01 5 68396736 68396736 C T SLC30A5 Silent p.F62F 0.05 TCGA-05-4424-01 5 71495673 71495673 C A MAP1B Missense_Mutation p.P2164Q 0.27 probably_damaging(0.98) TCGA-05-4424-01 5 74646642 74646642 A T HMGCR Missense_Mutation p.H270L 0.28 tolerated(0.06) probably_damaging(0.98) TCGA-05-4424-01 5 7520894 7520894 T A ADCY2 Missense_Mutation p.L151Q 0.23 deleterious(0) probably_damaging(0.98) TCGA-05-4424-01 5 79616044 79616044 T A SPZ1 Missense_Mutation p.S4T 0.32 tolerated(0.65) benign(0.306) TCGA-05-4424-01 5 80604800 80604800 G C ZCCHC9 Missense_Mutation p.E191Q 0.25 tolerated(0.24) possibly_damaging(0.836) TCGA-05-4424-01 5 814880 814881 GT - ZDHHC11 Frame_Shift_Del p.L393Wfs*13 0.31 TCGA-05-4424-01 5 82554470 82554470 G T XRCC4 Missense_Mutation p.Q289H 0.32 tolerated(0.53) probably_damaging(0.986) TCGA-05-4424-01 5 83402632 83402632 C A EDIL3 Silent p.L162L 0.31 TCGA-05-4424-01 5 9108268 9108268 C A SEMA5A Missense_Mutation p.C686F 0.26 deleterious(0) probably_damaging(0.999) TCGA-05-4424-01 6 100838170 100838170 G A SIM1 3'UTR 0.18 TCGA-05-4424-01 6 105406060 105406060 C A LIN28B Missense_Mutation p.H33N 0.19 tolerated(0.33) benign(0.065) TCGA-05-4424-01 6 107956574 107956574 G C SOBP Silent p.P842P 0.11 TCGA-05-4424-01 6 108502825 108502825 A T NR2E1 Missense_Mutation p.Q322L 0.15 deleterious(0) probably_damaging(0.946) TCGA-05-4424-01 6 109471397 109471397 G T CEP57L1 Missense_Mutation p.M139I 0.04 deleterious(0.01) probably_damaging(0.998) TCGA-05-4424-01 6 109484117 109484117 C T CEP57L1 Nonsense_Mutation p.R443* 0.07 TCGA-05-4424-01 6 109954510 109954510 G A AK9 Missense_Mutation p.T317I 0.16 tolerated(0.27) benign(0.015) TCGA-05-4424-01 6 131186758 131186758 C A EPB41L2 Missense_Mutation p.G916V 0.11 deleterious(0.05) benign(0.38) TCGA-05-4424-01 6 131186759 131186759 C A EPB41L2 Missense_Mutation p.G916C 0.11 deleterious(0) possibly_damaging(0.769) TCGA-05-4424-01 6 150004813 150004813 T C LATS1 Missense_Mutation p.N471S 0.22 tolerated_low_confidence(1) benign(0) TCGA-05-4424-01 6 152545687 152545687 C A SYNE1 Missense_Mutation p.R7155L 0.24 possibly_damaging(0.838) TCGA-05-4424-01 6 152640026 152640026 T G SYNE1 Missense_Mutation p.N5454T 0.30 benign(0.366) TCGA-05-4424-01 6 157528151 157528152 - T ARID1B Frame_Shift_Ins p.G1960Wfs*3 0.15 TCGA-05-4424-01 6 162475170 162475170 G T PARK2 Silent p.R191R 0.17 TCGA-05-4424-01 6 165746507 165746507 C G PDE10A 3'UTR 0.26 TCGA-05-4424-01 6 165801929 165801929 A T PDE10A Missense_Mutation p.L557Q 0.16 deleterious(0) probably_damaging(0.984) TCGA-05-4424-01 6 170160823 170160823 A G ERMARD Silent p.E276E 0.17 TCGA-05-4424-01 6 25921630 25921630 T C SLC17A2 Missense_Mutation p.Y84C 0.16 deleterious(0.02) probably_damaging(1) TCGA-05-4424-01 6 28539729 28539729 C G SCAND3 Missense_Mutation p.D1313H 0.20 deleterious_low_confidence(0.02) probably_damaging(0.99) TCGA-05-4424-01 6 28872184 28872184 G C TRIM27 Missense_Mutation p.P402R 0.16 deleterious(0) probably_damaging(0.987) TCGA-05-4424-01 6 29408120 29408120 G T OR10C1 Nonsense_Mutation p.E110* 0.23 TCGA-05-4424-01 6 29429580 29429580 C A OR2H1 Missense_Mutation p.L12I 0.06 deleterious(0) possibly_damaging(0.459) TCGA-05-4424-01 6 29429884 29429884 T A OR2H1 Missense_Mutation p.L113Q 0.21 deleterious(0.02) possibly_damaging(0.46) TCGA-05-4424-01 6 30105048 30105048 T A TRIM40 Missense_Mutation p.C79S 0.14 tolerated(0.48) benign(0.007) TCGA-05-4424-01 6 36930959 36930959 C T PI16 Missense_Mutation p.P281S 0.16 tolerated(0.12) benign(0.06) TCGA-05-4424-01 6 42613255 42613255 A G UBR2 Missense_Mutation p.K779R 0.23 tolerated(0.7) benign(0.016) TCGA-05-4424-01 6 42625764 42625764 C T UBR2 Missense_Mutation p.P959S 0.23 tolerated(0.38) benign(0.002) TCGA-05-4424-01 6 4735052 4735052 G C CDYL Missense_Mutation p.G54R 0.29 deleterious_low_confidence(0.02) benign(0) TCGA-05-4424-01 6 54735190 54735190 A T FAM83B Missense_Mutation p.Q49L 0.06 deleterious(0.02) benign(0.004) TCGA-05-4424-01 6 54792420 54792420 G T FAM83B Missense_Mutation p.G242C 0.23 deleterious(0) probably_damaging(1) TCGA-05-4424-01 6 55192317 55192317 C G GFRAL 5'UTR 0.29 TCGA-05-4424-01 6 56006587 56006587 T C COL21A1 Missense_Mutation p.D513G 0.07 tolerated(0.46) benign(0.004) TCGA-05-4424-01 6 56391360 56391360 C T DST Silent p.L3353L 0.19 TCGA-05-4424-01 6 56481202 56481202 C A DST Intron 0.18 TCGA-05-4424-01 6 70647965 70647965 T A COL19A1 Silent p.P303P 0.07 TCGA-05-4424-01 6 72806789 72806789 G A RIMS1 Missense_Mutation p.C128Y 0.19 deleterious(0) probably_damaging(0.992) TCGA-05-4424-01 6 74475751 74475751 G T CD109 Missense_Mutation p.W402C 0.26 tolerated(0.12) possibly_damaging(0.497) TCGA-05-4424-01 6 85446986 85446986 G T TBX18 Missense_Mutation p.P414H 0.22 deleterious(0.04) probably_damaging(0.997) TCGA-05-4424-01 6 85446987 85446987 G T TBX18 Missense_Mutation p.P414T 0.22 tolerated(0.24) probably_damaging(0.994) TCGA-05-4424-01 6 93964513 93964513 C A EPHA7 Missense_Mutation p.G795V 0.12 deleterious(0) probably_damaging(0.976) TCGA-05-4424-01 6 93974360 93974360 C A EPHA7 Missense_Mutation p.G565V 0.29 tolerated(0.17) benign(0.126) TCGA-05-4424-01 7 100549774 100549774 G T MUC3A Missense_Mutation p.V119L 0.14 tolerated(0.21) unknown(0) TCGA-05-4424-01 7 100552975 100552975 G A MUC3A Silent p.Q540Q 0.04 TCGA-05-4424-01 7 102108635 102108635 G C LRWD1 Splice_Site p.X268_splice 0.13 TCGA-05-4424-01 7 107418628 107418628 C A SLC26A3 Missense_Mutation p.R502S 0.11 deleterious(0) probably_damaging(0.971) TCGA-05-4424-01 7 110303633 110303633 C A IMMP2L 3'UTR 0.24 TCGA-05-4424-01 7 113517986 113517986 A G PPP1R3A Missense_Mutation p.L1054P 0.13 tolerated(0.2) benign(0.048) TCGA-05-4424-01 7 114655879 114655879 G A MDFIC Missense_Mutation p.D320N 0.05 deleterious(0.01) probably_damaging(0.983) TCGA-05-4424-01 7 117243607 117243607 G T CFTR Silent p.G893G 0.21 TCGA-05-4424-01 7 117874821 117874821 A T ANKRD7 Missense_Mutation p.R121W 0.09 deleterious(0.05) possibly_damaging(0.738) TCGA-05-4424-01 7 117874823 117874823 G T ANKRD7 Missense_Mutation p.R121S 0.09 tolerated(0.12) benign(0.032) TCGA-05-4424-01 7 119915484 119915484 C A KCND2 Missense_Mutation p.D266E 0.13 deleterious(0) probably_damaging(1) TCGA-05-4424-01 7 123302675 123302675 G A LMOD2 Silent p.T345T 0.04 TCGA-05-4424-01 7 127223074 127223074 C A GCC1 Missense_Mutation p.R441M 0.21 deleterious(0) benign(0.229) TCGA-05-4424-01 7 133821833 133821833 G T LRGUK Missense_Mutation p.G119W 0.28 deleterious(0) probably_damaging(0.998) TCGA-05-4424-01 7 138413517 138413517 G A ATP6V0A4 Missense_Mutation p.R667W 0.04 deleterious(0.02) possibly_damaging(0.846) TCGA-05-4424-01 7 138417828 138417828 T C ATP6V0A4 Missense_Mutation p.R568G 0.21 deleterious(0) benign(0.155) TCGA-05-4424-01 7 141352626 141352626 G A AGK Missense_Mutation p.E391K 0.09 deleterious(0) probably_damaging(0.987) TCGA-05-4424-01 7 142001015 142001015 A T TRBV2 Missense_Mutation p.Q3L 0.21 TCGA-05-4424-01 7 142162369 142162369 G T TRBV6-6 5'UTR 0.27 TCGA-05-4424-01 7 142176364 142176364 C T TRBV7-4 Silent p.G104G 0.09 TCGA-05-4424-01 7 142180539 142180539 A G TRBV6-5 Missense_Mutation p.V107A 0.18 deleterious(0.01) probably_damaging(0.936) TCGA-05-4424-01 7 142428720 142428720 C A TRBV28 Nonsense_Mutation p.S27* 0.28 TCGA-05-4424-01 7 142498757 142498757 G T TRBC2 Missense_Mutation p.A12S 0.10 tolerated(0.13) benign(0.072) TCGA-05-4424-01 7 148311163 148311163 G T C7orf33 Silent p.R78R 0.15 TCGA-05-4424-01 7 149174083 149174083 G A ZNF746 Silent p.L256L 0.13 TCGA-05-4424-01 7 150501975 150501975 T C TMEM176A 3'UTR 0.15 TCGA-05-4424-01 7 151878797 151878797 G A KMT2C Missense_Mutation p.P2050S 0.10 possibly_damaging(0.493) TCGA-05-4424-01 7 19184867 19184867 C A FERD3L Missense_Mutation p.G40V 0.16 deleterious(0.01) benign(0.398) TCGA-05-4424-01 7 20721275 20721275 C T ABCB5 Missense_Mutation p.L619F 0.13 deleterious(0.01) probably_damaging(0.978) TCGA-05-4424-01 7 23509789 23509789 A T IGF2BP3 5'UTR 0.26 TCGA-05-4424-01 7 36429683 36429683 T A KIAA0895 Translation_Start_Site p.M1? 0.11 deleterious_low_confidence(0.05) benign(0.008) TCGA-05-4424-01 7 36895151 36895151 C A ELMO1 3'UTR 0.14 TCGA-05-4424-01 7 50513772 50513772 C A FIGNL1 Missense_Mutation p.G405V 0.20 deleterious(0) probably_damaging(0.999) TCGA-05-4424-01 7 53104302 53104302 C T POM121L12 3'UTR 0.07 TCGA-05-4424-01 7 57522834 57522834 C A ZNF716 Silent p.P74P 0.14 TCGA-05-4424-01 7 76019342 76019342 C A SRCRB4D 3'UTR 0.09 TCGA-05-4424-01 7 82595231 82595231 T A PCLO Silent p.P1291P 0.21 TCGA-05-4424-01 7 90896045 90896045 C T FZD1 Missense_Mutation p.S617L 0.12 deleterious(0) possibly_damaging(0.581) TCGA-05-4424-01 7 99219026 99219026 G A ZSCAN25 Missense_Mutation p.E140K 0.05 tolerated(0.12) benign(0.004) TCGA-05-4424-01 7 99474611 99474611 C A OR2AE1 Missense_Mutation p.G16W 0.13 deleterious(0) probably_damaging(0.997) TCGA-05-4424-01 8 101174537 101174537 G T SPAG1 Missense_Mutation p.W10L 0.42 tolerated(0.55) benign(0.001) TCGA-05-4424-01 8 10468347 10468347 C A RP1L1 Missense_Mutation p.R1087S 0.14 benign(0.064) TCGA-05-4424-01 8 10470559 10470559 G T RP1L1 Missense_Mutation p.T350K 0.29 possibly_damaging(0.906) TCGA-05-4424-01 8 10480731 10480731 C A RP1L1 Splice_Site 0.24 TCGA-05-4424-01 8 106431453 106431453 C A ZFPM2 Missense_Mutation p.P41Q 0.06 tolerated(0.11) possibly_damaging(0.764) TCGA-05-4424-01 8 10755642 10755642 C - XKR6 Frame_Shift_Del p.L584Sfs*19 0.20 TCGA-05-4424-01 8 11163743 11163743 G T MTMR9 Missense_Mutation p.R212S 0.11 deleterious(0) possibly_damaging(0.598) TCGA-05-4424-01 8 113585804 113585804 G T CSMD3 Missense_Mutation p.T1323N 0.38 deleterious(0.03) probably_damaging(0.994) TCGA-05-4424-01 8 124413410 124413410 G C ATAD2 5'Flank 0.05 TCGA-05-4424-01 8 133898771 133898771 A T TG Missense_Mutation p.Q385L 0.05 deleterious(0.04) benign(0.075) TCGA-05-4424-01 8 133898772 133898772 G A TG Silent p.Q385Q 0.07 TCGA-05-4424-01 8 134472025 134472025 C A ST3GAL1 Silent p.R335R 0.07 TCGA-05-4424-01 8 141262976 141262976 C A TRAPPC9 Missense_Mutation p.Q875H 0.37 tolerated(0.12) probably_damaging(0.989) TCGA-05-4424-01 8 20004891 20004891 C A SLC18A1 Missense_Mutation p.G448C 0.22 deleterious(0) probably_damaging(0.996) TCGA-05-4424-01 8 22019268 22019268 C G SFTPC 5'UTR 0.42 TCGA-05-4424-01 8 28573535 28573554 GAGTGACCCGACGTGATCTG - EXTL3 5'UTR 0.28 TCGA-05-4424-01 8 42611846 42611846 G A CHRNA6 Missense_Mutation p.P166S 0.12 deleterious(0) probably_damaging(1) TCGA-05-4424-01 8 48883377 48883377 G A MCM4 Missense_Mutation p.E581K 0.11 deleterious(0) possibly_damaging(0.864) TCGA-05-4424-01 8 54764607 54764607 G T RGS20 Missense_Mutation p.A50S 0.09 deleterious_low_confidence(0) benign(0.321) TCGA-05-4424-01 8 55541512 55541512 A T RP1 Silent p.S1690S 0.46 TCGA-05-4424-01 8 75941685 75941685 G A CRISPLD1 Missense_Mutation p.D462N 0.08 deleterious(0) probably_damaging(0.967) TCGA-05-4424-01 8 77616325 77616325 T A ZFHX4 Translation_Start_Site p.M1? 0.12 benign(0.092) TCGA-05-4424-01 8 77764826 77764826 C A ZFHX4 Missense_Mutation p.S1890Y 0.32 possibly_damaging(0.781) TCGA-05-4424-01 8 77775789 77775789 G T ZFHX4 Missense_Mutation p.G3280V 0.30 probably_damaging(0.999) TCGA-05-4424-01 8 87641203 87641203 A T CNGB3 Missense_Mutation p.V475E 0.12 deleterious(0) probably_damaging(0.944) TCGA-05-4424-01 8 87656858 87656858 A G CNGB3 Silent p.Y349Y 0.33 TCGA-05-4424-01 8 92352651 92352651 C G SLC26A7 Missense_Mutation p.P300A 0.24 deleterious(0) probably_damaging(0.999) TCGA-05-4424-01 8 92998350 92998350 A T RUNX1T1 Splice_Site p.X438_splice 0.03 TCGA-05-4424-01 8 93023247 93023247 C A RUNX1T1 Missense_Mutation p.V192F 0.43 deleterious(0) probably_damaging(0.978) TCGA-05-4424-01 9 101807016 101807016 G T COL15A1 Splice_Site p.X882_splice 0.08 TCGA-05-4424-01 9 107457137 107457137 C A OR13D1 Silent p.V145V 0.07 TCGA-05-4424-01 9 108126844 108126844 G T SLC44A1 Missense_Mutation p.V366F 0.05 tolerated(0.7) benign(0.006) TCGA-05-4424-01 9 115648836 115648836 A G SLC46A2 Missense_Mutation p.L425S 0.23 tolerated(0.06) benign(0.034) TCGA-05-4424-01 9 120474743 120474743 C A TLR4 Missense_Mutation p.P113T 0.07 deleterious(0) probably_damaging(0.999) TCGA-05-4424-01 9 124910549 124910549 T A NDUFA8 Nonsense_Mutation p.K75* 0.08 TCGA-05-4424-01 9 124910550 124910550 T G NDUFA8 Silent p.I74I 0.08 TCGA-05-4424-01 9 130479240 130479240 T A PTRH1 Splice_Site 0.07 TCGA-05-4424-01 9 131873298 131873298 C T PPP2R4 5'Flank 0.14 TCGA-05-4424-01 9 132982036 132982036 G T NCS1 Missense_Mutation p.Q87H 0.15 tolerated(0.42) possibly_damaging(0.448) TCGA-05-4424-01 9 135553434 135553434 A C GTF3C4 Missense_Mutation p.Q143P 0.08 deleterious(0.02) probably_damaging(0.995) TCGA-05-4424-01 9 137772709 137772709 C A FCN2 Silent p.T14T 0.16 TCGA-05-4424-01 9 138440492 138440492 C G OBP2A Intron 0.16 TCGA-05-4424-01 9 140880947 140880947 C A CACNA1B Missense_Mutation p.L618M 0.23 tolerated(0.11) probably_damaging(0.961) TCGA-05-4424-01 9 14823206 14823206 C A FREM1 Silent p.G763G 0.34 TCGA-05-4424-01 9 20413979 20413979 C A MLLT3 Missense_Mutation p.D289Y 0.26 deleterious(0) possibly_damaging(0.879) TCGA-05-4424-01 9 21077762 21077762 A G IFNB1 Missense_Mutation p.F36S 0.09 tolerated(0.54) benign(0.001) TCGA-05-4424-01 9 21202097 21202097 C A IFNA7 Missense_Mutation p.G23V 0.07 deleterious(0) possibly_damaging(0.781) TCGA-05-4424-01 9 22823399 22823399 C T RP11-399D6.2 RNA 0.51 TCGA-05-4424-01 9 33676715 33676715 C G PTENP1 RNA 0.30 TCGA-05-4424-01 9 34614163 34614163 T C DCTN3 Intron 0.07 TCGA-05-4424-01 9 37126589 37126589 A G ZCCHC7 Missense_Mutation p.D87G 0.16 deleterious(0) probably_damaging(0.998) TCGA-05-4424-01 9 37746358 37746358 A C FRMPD1 Silent p.G1443G 0.53 TCGA-05-4424-01 9 71006459 71006459 C A PGM5 Missense_Mutation p.P236H 0.15 deleterious(0) probably_damaging(1) TCGA-05-4424-01 9 77275585 77275585 C T RORB Silent p.T230T 0.09 TCGA-05-4424-01 9 84608624 84608624 G T SPATA31D1 Missense_Mutation p.R1080L 0.09 tolerated(0.11) benign(0.132) TCGA-05-4424-01 9 87366928 87366928 G A NTRK2 Missense_Mutation p.V442M 0.06 tolerated(0.07) possibly_damaging(0.586) TCGA-05-4424-01 9 88925683 88925683 T C ZCCHC6 Missense_Mutation p.I1106V 0.11 deleterious(0.05) probably_damaging(0.983) TCGA-05-4424-01 9 91943726 91943726 G T SECISBP2 Missense_Mutation p.W242C 0.20 deleterious(0) probably_damaging(0.977) TCGA-05-4424-01 9 968030 968030 C T DMRT1 Missense_Mutation p.S338L 0.11 tolerated(0.09) possibly_damaging(0.647) TCGA-05-4424-01 9 990652 990652 G T DMRT3 Missense_Mutation p.G356W 0.15 deleterious_low_confidence(0) benign(0.004) TCGA-05-4424-01 X 101576761 101576761 C A NXF2 Silent p.A419A 0.16 TCGA-05-4424-01 X 101818366 101818366 G C NXF4 RNA 0.40 TCGA-05-4424-01 X 106459949 106459949 C A PIH1D3 Missense_Mutation p.P68T 0.12 deleterious(0) probably_damaging(0.994) TCGA-05-4424-01 X 109694214 109694214 T A RGAG1 Silent p.S123S 0.42 TCGA-05-4424-01 X 111698882 111698882 A C ZCCHC16 Missense_Mutation p.H309P 0.17 deleterious(0.03) possibly_damaging(0.804) TCGA-05-4424-01 X 111698884 111698884 C T ZCCHC16 Nonsense_Mutation p.Q310* 0.14 TCGA-05-4424-01 X 118145781 118145781 T C LONRF3 Silent p.L552L 0.13 TCGA-05-4424-01 X 134947984 134947984 G T CT45A5 Missense_Mutation p.S114Y 0.07 tolerated(0.39) benign(0.24) TCGA-05-4424-01 X 135430790 135430790 C A GPR112 Missense_Mutation p.P1642H 0.14 deleterious(0) possibly_damaging(0.808) TCGA-05-4424-01 X 135572294 135572294 A G BRS3 Missense_Mutation p.Y146C 0.29 deleterious(0) probably_damaging(1) TCGA-05-4424-01 X 136113649 136113649 A T GPR101 Missense_Mutation p.L62Q 0.32 deleterious(0) probably_damaging(0.962) TCGA-05-4424-01 X 139038425 139038425 G A CXorf66 Missense_Mutation p.P239L 0.09 tolerated(0.23) probably_damaging(0.958) TCGA-05-4424-01 X 148664881 148664881 G T MAGEA9B 5'UTR 0.23 TCGA-05-4424-01 X 151336822 151336822 T G GABRA3 Missense_Mutation p.S453R 0.11 deleterious(0.02) probably_damaging(1) TCGA-05-4424-01 X 15266879 15266879 G A ASB9 Silent p.F249F 0.19 TCGA-05-4424-01 X 153171941 153171941 C A AVPR2 Intron 0.30 TCGA-05-4424-01 X 19375768 19375768 A T PDHA1 Splice_Site p.X316_splice 0.49 TCGA-05-4424-01 X 22065243 22065243 G A PHEX Nonsense_Mutation p.W88* 0.10 TCGA-05-4424-01 X 27997831 27997831 C A DCAF8L1 Missense_Mutation p.D541Y 0.49 deleterious(0.04) benign(0.015) TCGA-05-4424-01 X 30577698 30577698 C A CXorf21 Nonsense_Mutation p.E259* 0.50 TCGA-05-4424-01 X 31089806 31089806 G T FTHL17 Missense_Mutation p.P89T 0.07 deleterious(0.01) possibly_damaging(0.854) TCGA-05-4424-01 X 3235434 3235434 G T MXRA5 Missense_Mutation p.H2096Q 0.71 tolerated(0.1) possibly_damaging(0.526) TCGA-05-4424-01 X 37027667 37027667 C A FAM47C Missense_Mutation p.P395H 0.46 deleterious(0) probably_damaging(0.937) TCGA-05-4424-01 X 44703540 44703540 C A DUSP21 Silent p.A54A 0.44 TCGA-05-4424-01 X 46845161 46845161 A G JADE3 Missense_Mutation p.K32E 0.37 tolerated(0.48) benign(0.403) TCGA-05-4424-01 X 47034444 47034444 G T RBM10 Nonsense_Mutation p.E177* 0.48 TCGA-05-4424-01 X 53453249 53453249 G C RIBC1 Missense_Mutation p.D9H 0.07 deleterious(0.02) probably_damaging(1) TCGA-05-4424-01 X 63557210 63557210 G C MTMR8 Missense_Mutation p.Q347E 0.28 deleterious(0.02) probably_damaging(0.954) TCGA-05-4424-01 X 73064159 73064159 C A XIST RNA 0.17 TCGA-05-4424-01 X 79973080 79973080 C A BRWD3 Silent p.G741G 0.06 TCGA-05-4424-01 X 82764135 82764135 G C POU3F4 Missense_Mutation p.S268T 0.20 deleterious(0.04) possibly_damaging(0.765) TCGA-05-4424-01 X 84362524 84362524 G T SATL1 Missense_Mutation p.P484Q 0.14 tolerated(0.12) possibly_damaging(0.808) TCGA-05-4424-01 X 91090850 91090850 C A PCDH11X Missense_Mutation p.P116Q 0.30 tolerated(0.11) probably_damaging(0.995) TCGA-05-4425-01 11 119045824 119045825 - T NLRX1 Frame_Shift_Ins p.Y505Lfs*20 0.25 TCGA-05-4425-01 11 67770551 67770551 C A UNC93B1 Missense_Mutation p.M111I 0.26 tolerated(0.23) benign(0.149) TCGA-05-4425-01 12 29670381 29670381 C G TMTC1 Missense_Mutation p.Q716H 0.25 tolerated(0.19) benign(0.014) TCGA-05-4425-01 12 45105123 45105123 C A NELL2 Nonsense_Mutation p.E431* 0.31 TCGA-05-4425-01 12 57572723 57572723 T G LRP1 Missense_Mutation p.C1553G 0.23 probably_damaging(0.996) TCGA-05-4425-01 14 67746041 67746041 C G MPP5 Missense_Mutation p.R52G 0.18 tolerated(0.07) benign(0.194) TCGA-05-4425-01 14 91691087 91691087 C T C14orf159 Silent p.I592I 0.09 TCGA-05-4425-01 15 39880808 39880808 T G THBS1 Missense_Mutation p.L518R 0.23 tolerated(0.18) possibly_damaging(0.783) TCGA-05-4425-01 16 10274214 10274214 G A GRIN2A Missense_Mutation p.R19C 0.18 tolerated_low_confidence(0.11) benign(0.2) TCGA-05-4425-01 16 12662416 12662416 G T SNX29 Missense_Mutation p.R791L 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-05-4425-01 16 12798545 12798545 G A CPPED1 Silent p.D217D 0.32 TCGA-05-4425-01 16 20996705 20996705 G A DNAH3 Silent p.Y2453Y 0.26 TCGA-05-4425-01 16 23716365 23716365 G T ERN2 Silent p.G279G 0.36 TCGA-05-4425-01 16 30078933 30078933 G A ALDOA Missense_Mutation p.R146H 0.33 tolerated(0.1) benign(0.005) TCGA-05-4425-01 16 84035515 84035515 G A NECAB2 Missense_Mutation p.V376M 0.31 deleterious(0) probably_damaging(0.919) TCGA-05-4425-01 17 37785471 37785471 C T PPP1R1B Missense_Mutation p.H44Y 0.37 tolerated(0.06) probably_damaging(0.955) TCGA-05-4425-01 17 40257096 40257096 G A DHX58 Silent p.I447I 0.10 TCGA-05-4425-01 19 10080323 10080323 C T COL5A3 Silent p.T1342T 0.17 TCGA-05-4425-01 19 43922333 43922333 G A TEX101 Silent p.S196S 0.28 TCGA-05-4425-01 19 50391047 50391047 G A TBC1D17 Missense_Mutation p.D539N 0.37 tolerated(0.58) possibly_damaging(0.777) TCGA-05-4425-01 1 148004489 148004489 T C NBPF14 3'UTR 0.04 TCGA-05-4425-01 1 197396917 197396917 C A CRB1 Missense_Mutation p.T821K 0.38 tolerated(0.37) benign(0.141) TCGA-05-4425-01 1 27056307 27056307 C T ARID1A Nonsense_Mutation p.Q435* 0.40 TCGA-05-4425-01 20 45808545 45808545 A G EYA2 Missense_Mutation p.N433S 0.24 tolerated(1) benign(0.007) TCGA-05-4425-01 20 56137755 56137755 G A PCK1 Missense_Mutation p.R137H 0.38 deleterious(0) probably_damaging(0.986) TCGA-05-4425-01 2 174774563 174774563 C T SP3 3'UTR 0.27 TCGA-05-4425-01 2 179437059 179437059 G A TTN Silent p.G24600G 0.24 TCGA-05-4425-01 2 238289959 238289959 A G COL6A3 Missense_Mutation p.F499S 0.32 probably_damaging(0.985) TCGA-05-4425-01 2 24103532 24103532 T A ATAD2B Missense_Mutation p.D293V 0.37 tolerated(0.07) benign(0.009) TCGA-05-4425-01 2 49195904 49195904 C T FSHR Missense_Mutation p.A263T 0.23 tolerated(0.24) benign(0.003) TCGA-05-4425-01 2 68882446 68882446 G A PROKR1 Missense_Mutation p.R307H 0.34 deleterious(0) probably_damaging(0.997) TCGA-05-4425-01 2 73518784 73518784 C T EGR4 Missense_Mutation p.R524H 0.21 deleterious(0) probably_damaging(0.998) TCGA-05-4425-01 2 89459411 89459411 G A IGKV6-21 Nonsense_Mutation p.Q56* 0.33 TCGA-05-4425-01 3 112998136 112998136 C T BOC Silent p.S618S 0.33 TCGA-05-4425-01 3 11302362 11302362 C T HRH1 3'UTR 0.21 TCGA-05-4425-01 3 123021953 123021953 G A ADCY5 Silent p.G891G 0.31 TCGA-05-4425-01 3 157213089 157213089 G C VEPH1 Missense_Mutation p.A17G 0.28 deleterious(0) probably_damaging(0.999) TCGA-05-4425-01 3 183515839 183515839 G C YEATS2 Missense_Mutation p.V1076L 0.22 deleterious(0) possibly_damaging(0.53) TCGA-05-4425-01 3 38791573 38791573 C T SCN10A Missense_Mutation p.V620I 0.43 deleterious(0.05) benign(0.032) TCGA-05-4425-01 3 41266137 41266137 C T CTNNB1 Missense_Mutation p.S45F 0.26 deleterious(0) probably_damaging(0.954) TCGA-05-4425-01 3 43381980 43381980 C T SNRK Silent p.D311D 0.31 TCGA-05-4425-01 3 47143009 47143010 - A SETD2 Frame_Shift_Ins p.T1652Yfs*14 0.22 TCGA-05-4425-01 3 49693126 49693126 G A BSN Missense_Mutation p.R2046H 0.15 unknown(0) TCGA-05-4425-01 3 9801424 9801424 G T CAMK1 Missense_Mutation p.F252L 0.26 tolerated(0.16) probably_damaging(0.997) TCGA-05-4425-01 4 119059263 119059263 G A NDST3 Missense_Mutation p.V427I 0.32 deleterious(0.04) benign(0.32) TCGA-05-4425-01 6 159190399 159190399 G A EZR Missense_Mutation p.R435W 0.09 deleterious(0.01) possibly_damaging(0.849) TCGA-05-4425-01 6 56376110 56376110 T C DST Missense_Mutation p.E3599G 0.20 probably_damaging(0.999) TCGA-05-4425-01 7 44797075 44797075 C T ZMIZ2 Missense_Mutation p.A156V 0.10 deleterious(0.02) benign(0.409) TCGA-05-4425-01 8 100523686 100523686 A G VPS13B Missense_Mutation p.S1552G 0.46 tolerated(0.18) benign(0.027) TCGA-05-4425-01 8 38314896 38314896 C T FGFR1 Silent p.P56P 0.36 TCGA-05-4425-01 8 61765656 61765656 C T CHD7 Silent p.F2124F 0.25 TCGA-05-4425-01 9 119976967 119976967 C T ASTN2 Missense_Mutation p.A229T 0.31 tolerated_low_confidence(1) unknown(0) TCGA-05-4425-01 9 132084686 132084686 T C C9orf106 RNA 0.26 TCGA-05-4425-01 9 132637634 132637634 C T USP20 Silent p.S698S 0.33 TCGA-05-4425-01 9 140136447 140136447 T A TUBB4B Missense_Mutation p.I84N 0.37 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-05-4425-01 X 152858167 152858167 G - FAM58A Frame_Shift_Del p.L150Sfs*5 0.38 TCGA-05-4426-01 10 124459311 124459311 C T C10orf120 5'UTR 0.27 TCGA-05-4426-01 10 3178698 3178698 T C PFKP Missense_Mutation p.L761P 0.34 deleterious(0) probably_damaging(0.998) TCGA-05-4426-01 11 108384669 108384669 C T EXPH5 Missense_Mutation p.G522D 0.41 tolerated(0.07) benign(0.143) TCGA-05-4426-01 11 48238768 48238768 G A OR4B1 Missense_Mutation p.R136H 0.31 tolerated(0.12) benign(0.006) TCGA-05-4426-01 11 55110931 55110931 T C OR4A16 Silent p.C85C 0.07 TCGA-05-4426-01 13 25671090 25671090 A G PABPC3 Missense_Mutation p.N252D 0.47 deleterious(0.02) possibly_damaging(0.699) TCGA-05-4426-01 13 58208287 58208287 C A PCDH17 Missense_Mutation p.A536D 0.21 deleterious(0) probably_damaging(0.995) TCGA-05-4426-01 14 77895357 77895357 C T VIPAS39 Missense_Mutation p.V450I 0.28 tolerated(0.14) benign(0.202) TCGA-05-4426-01 15 55652008 55652008 C T CCPG1 Missense_Mutation p.E655K 0.08 deleterious(0) probably_damaging(0.944) TCGA-05-4426-01 16 3779782 3779782 G A CREBBP Nonsense_Mutation p.Q1756* 0.36 TCGA-05-4426-01 16 85699584 85699584 C T GSE1 Missense_Mutation p.P921S 0.24 tolerated(0.26) benign(0.109) TCGA-05-4426-01 16 9009171 9009171 G A USP7 Missense_Mutation p.R340W 0.29 deleterious(0.02) possibly_damaging(0.527) TCGA-05-4426-01 17 18043881 18043915 CCTGGGCAAGAGCAGCTCCGTCACTCGGCTCTACA - MYO15A Frame_Shift_Del p.L1755Gfs*42 0.49 TCGA-05-4426-01 17 39383064 39383064 G A KRTAP9-2 Missense_Mutation p.R53H 0.16 tolerated(0.28) unknown(0) TCGA-05-4426-01 17 4621224 4621224 C T ARRB2 Missense_Mutation p.P197L 0.48 deleterious(0) possibly_damaging(0.85) TCGA-05-4426-01 17 65688807 65688807 G A PITPNC1 Missense_Mutation p.V268I 0.32 tolerated(0.28) benign(0.001) TCGA-05-4426-01 17 7578466 7578466 G A TP53 Missense_Mutation p.T155I 0.06 deleterious(0.01) possibly_damaging(0.856) TCGA-05-4426-01 17 8701497 8701497 C A MFSD6L Missense_Mutation p.M314I 0.53 tolerated(0.2) benign(0.013) TCGA-05-4426-01 18 197634 197634 A C USP14 Missense_Mutation p.I205L 0.19 tolerated(0.17) benign(0.001) TCGA-05-4426-01 19 15730354 15730354 G T AD000091.2 5'Flank 0.30 TCGA-05-4426-01 1 101705711 101705711 C T S1PR1 3'UTR 0.33 TCGA-05-4426-01 1 145473962 145473962 G T ANKRD34A Missense_Mutation p.D212Y 0.34 deleterious(0.03) possibly_damaging(0.496) TCGA-05-4426-01 1 156823801 156823801 G A INSRR Missense_Mutation p.A127V 0.33 deleterious(0) benign(0.078) TCGA-05-4426-01 1 158627413 158627413 G A SPTA1 Nonsense_Mutation p.R887* 0.25 TCGA-05-4426-01 1 165380300 165380300 C A RXRG Missense_Mutation p.E223D 0.42 tolerated(0.19) possibly_damaging(0.509) TCGA-05-4426-01 1 171083304 171083304 A G FMO3 Missense_Mutation p.T329A 0.34 deleterious(0) probably_damaging(0.986) TCGA-05-4426-01 20 2097560 2097560 G T STK35 Missense_Mutation p.D381Y 0.41 deleterious(0) probably_damaging(1) TCGA-05-4426-01 20 47682732 47682732 G A CSE1L Missense_Mutation p.E78K 0.34 deleterious(0.04) possibly_damaging(0.777) TCGA-05-4426-01 20 62373320 62373320 G A SLC2A4RG Missense_Mutation p.D164N 0.17 deleterious(0.01) probably_damaging(0.957) TCGA-05-4426-01 22 30951309 30951309 G C GAL3ST1 Missense_Mutation p.N301K 0.37 deleterious(0) probably_damaging(1) TCGA-05-4426-01 22 42988085 42988085 A C POLDIP3 Silent p.L299L 0.23 TCGA-05-4426-01 2 10914974 10914974 T A ATP6V1C2 Silent p.I233I 0.10 TCGA-05-4426-01 2 149228015 149228015 A G MBD5 Missense_Mutation p.T835A 0.25 tolerated(0.1) benign(0.388) TCGA-05-4426-01 2 74597184 74597184 G C DCTN1 Missense_Mutation p.L434V 0.29 deleterious(0.01) probably_damaging(0.967) TCGA-05-4426-01 3 14974723 14974723 A C FGD5 3'UTR 0.47 TCGA-05-4426-01 3 169540678 169540678 T A LRRIQ4 Nonsense_Mutation p.C323* 0.33 TCGA-05-4426-01 3 50330118 50330118 C A IFRD2 5'Flank 0.42 TCGA-05-4426-01 3 9950949 9950949 C T IL17RE Nonsense_Mutation p.Q262* 0.33 TCGA-05-4426-01 4 122741887 122741887 T A CCNA2 Nonsense_Mutation p.K202* 0.39 TCGA-05-4426-01 4 184182392 184182392 C A WWC2 Missense_Mutation p.A539D 0.22 deleterious(0.02) benign(0.011) TCGA-05-4426-01 4 22389442 22389442 G A GPR125 Silent p.N1284N 0.21 TCGA-05-4426-01 5 140734993 140734993 G A PCDHGA4 Missense_Mutation p.A76T 0.23 deleterious_low_confidence(0.04) benign(0.358) TCGA-05-4426-01 5 148407707 148407707 G C SH3TC2 Missense_Mutation p.L530V 0.25 tolerated(0.26) possibly_damaging(0.665) TCGA-05-4426-01 5 15936591 15936591 C T FBXL7 Missense_Mutation p.R258W 0.69 deleterious(0.02) possibly_damaging(0.566) TCGA-05-4426-01 5 169533097 169533097 C T FOXI1 Missense_Mutation p.R46W 0.06 deleterious(0) probably_damaging(0.999) TCGA-05-4426-01 5 170736693 170736693 A T TLX3 Silent p.L108L 0.18 TCGA-05-4426-01 5 72196889 72196889 G A TNPO1 Missense_Mutation p.G835S 0.31 deleterious(0) possibly_damaging(0.839) TCGA-05-4426-01 6 108508779 108508779 A T NR2E1 3'UTR 0.33 TCGA-05-4426-01 6 146720225 146720225 C T GRM1 Missense_Mutation p.R684C 0.52 deleterious(0) probably_damaging(1) TCGA-05-4426-01 6 26225700 26225700 G A HIST1H3E Silent p.E106E 0.07 TCGA-05-4426-01 7 31617968 31617968 G C CCDC129 Missense_Mutation p.E390Q 0.23 deleterious(0.02) probably_damaging(0.957) TCGA-05-4426-01 7 65554160 65554160 C T ASL Missense_Mutation p.R306W 0.20 deleterious(0) benign(0.019) TCGA-05-4426-01 8 142176386 142176386 G A DENND3 Missense_Mutation p.V471I 0.30 tolerated(0.28) benign(0.05) TCGA-05-4426-01 9 21971209 21971209 T A CDKN2A Splice_Site p.X51_splice 0.59 TCGA-05-4426-01 X 135958803 135958803 A G RBMX Missense_Mutation p.Y134H 0.09 deleterious(0.04) benign(0.048) TCGA-05-4426-01 X 70517741 70517741 A C NONO Missense_Mutation p.M362L 0.11 tolerated(0.57) benign(0.017) TCGA-05-4427-01 10 102053073 102053073 T A PKD2L1 Nonsense_Mutation p.K575* 0.62 TCGA-05-4427-01 10 103298106 103298106 C T BTRC Missense_Mutation p.T545I 0.55 deleterious(0.02) benign(0.237) TCGA-05-4427-01 10 106075105 106075105 C A ITPRIP Silent p.L235L 0.29 TCGA-05-4427-01 10 106974204 106974204 C A SORCS3 Silent p.R794R 0.07 TCGA-05-4427-01 10 107023105 107023105 G - SORCS3 Frame_Shift_Del p.E1215Rfs*20 0.12 TCGA-05-4427-01 10 108380238 108380238 G T SORCS1 Missense_Mutation p.P915H 0.54 deleterious(0.01) probably_damaging(0.987) TCGA-05-4427-01 10 108439016 108439016 G C SORCS1 Missense_Mutation p.Q580E 0.30 tolerated(0.08) benign(0.051) TCGA-05-4427-01 10 108536424 108536424 A G SORCS1 Silent p.I251I 0.09 TCGA-05-4427-01 10 11299746 11299746 G T CELF2 Missense_Mutation p.C150F 0.47 tolerated(0.34) possibly_damaging(0.839) TCGA-05-4427-01 10 116930951 116930951 C T ATRNL1 Missense_Mutation p.H417Y 0.13 deleterious(0) probably_damaging(0.993) TCGA-05-4427-01 10 118666150 118666150 C A KIAA1598 Missense_Mutation p.A490S 0.57 tolerated(0.49) benign(0.066) TCGA-05-4427-01 10 12206455 12206455 T C SEC61A2 3'UTR 0.08 TCGA-05-4427-01 10 12228244 12228244 T C NUDT5 Missense_Mutation p.Y16C 0.14 tolerated(0.18) benign(0) TCGA-05-4427-01 10 123246893 123246893 T C FGFR2 Missense_Mutation p.R679G 0.53 deleterious(0.01) benign(0.074) TCGA-05-4427-01 10 123846949 123846949 A T TACC2 Missense_Mutation p.E1645V 0.49 possibly_damaging(0.489) TCGA-05-4427-01 10 124595771 124595771 C T CUZD1 Missense_Mutation p.D305N 0.57 tolerated(0.11) probably_damaging(1) TCGA-05-4427-01 10 128147646 128147646 G T C10orf90 Silent p.T620T 0.57 TCGA-05-4427-01 10 134015467 134015467 C A DPYSL4 Missense_Mutation p.D376E 0.55 deleterious(0) possibly_damaging(0.703) TCGA-05-4427-01 10 134752117 134752117 T C TTC40 Missense_Mutation p.K171R 0.08 tolerated(0.23) benign(0.191) TCGA-05-4427-01 10 134896297 134896297 G C GPR123-AS1 3'Flank 0.46 TCGA-05-4427-01 10 135103475 135103475 T A TUBGCP2 Splice_Site p.X433_splice 0.25 TCGA-05-4427-01 10 21074853 21074853 C T NEBL Splice_Site p.X957_splice 0.05 TCGA-05-4427-01 10 21804537 21804537 C A SKIDA1 Missense_Mutation p.A739S 0.19 deleterious(0.03) unknown(0) TCGA-05-4427-01 10 23295898 23295898 G T ARMC3 Missense_Mutation p.S606I 0.27 deleterious(0.01) benign(0.347) TCGA-05-4427-01 10 24833392 24833392 A C KIAA1217 Silent p.I1731I 0.17 TCGA-05-4427-01 10 25886710 25886710 A - GPR158 Frame_Shift_Del p.K720Nfs*14 0.09 TCGA-05-4427-01 10 26939550 26939550 T A LINC00202-2 RNA 0.09 TCGA-05-4427-01 10 27539347 27539347 C G RP11-85G18.6 RNA 0.16 TCGA-05-4427-01 10 28284091 28284091 C A ARMC4 5'UTR 0.19 TCGA-05-4427-01 10 29821015 29821015 T C SVIL Missense_Mutation p.Y642C 0.54 deleterious(0) probably_damaging(0.982) TCGA-05-4427-01 10 31810711 31810711 C T ZEB1 Silent p.A817A 0.47 TCGA-05-4427-01 10 43089497 43089497 A G ZNF33B Missense_Mutation p.Y301H 0.35 tolerated(0.24) benign(0.008) TCGA-05-4427-01 10 45940969 45940969 T A ALOX5 Missense_Mutation p.M620K 0.05 tolerated(0.34) benign(0.034) TCGA-05-4427-01 10 46280112 46280112 G C FAM21C Missense_Mutation p.D860H 0.15 deleterious(0) probably_damaging(1) TCGA-05-4427-01 10 48370425 48370425 G A ZNF488 Intron 0.20 TCGA-05-4427-01 10 49654495 49654495 T C ARHGAP22 Missense_Mutation p.E695G 0.04 deleterious(0) probably_damaging(0.944) TCGA-05-4427-01 10 50723611 50723611 C A ERCC6-PGBD3 Missense_Mutation p.R985L 0.25 tolerated_low_confidence(0.46) unknown(0) TCGA-05-4427-01 10 58119778 58119778 C A ZWINT Splice_Site p.X86_splice 0.54 TCGA-05-4427-01 10 69934412 69934412 A T MYPN Missense_Mutation p.M855L 0.10 tolerated(0.31) benign(0) TCGA-05-4427-01 10 73558956 73558956 C A CDH23 Silent p.P141P 0.37 TCGA-05-4427-01 10 81065336 81065336 G T ZMIZ1 Nonsense_Mutation p.G801* 0.55 TCGA-05-4427-01 10 82331222 82331222 G T SH2D4B Missense_Mutation p.R128L 0.21 deleterious(0.02) probably_damaging(0.954) TCGA-05-4427-01 10 84745048 84745048 C A NRG3 Missense_Mutation p.S593Y 0.31 deleterious(0) probably_damaging(0.977) TCGA-05-4427-01 10 87406931 87406931 A C GRID1 Intron 0.21 TCGA-05-4427-01 10 93390350 93390350 A T PPP1R3C Silent p.T96T 0.10 TCGA-05-4427-01 10 97413148 97413148 C A ALDH18A1 5'UTR 0.12 TCGA-05-4427-01 11 103907482 103907482 C T DDI1 5'UTR 0.23 TCGA-05-4427-01 11 111636056 111636056 A G PPP2R1B Missense_Mutation p.V56A 0.39 tolerated(0.39) benign(0.013) TCGA-05-4427-01 11 113285144 113285144 C A DRD2 Missense_Mutation p.V255F 0.12 tolerated(0.17) benign(0.069) TCGA-05-4427-01 11 113816739 113816739 G A HTR3B Silent p.E402E 0.17 TCGA-05-4427-01 11 114453580 114453580 G T NXPE4 Missense_Mutation p.P87H 0.16 deleterious(0.02) probably_damaging(0.989) TCGA-05-4427-01 11 120702643 120702643 G T GRIK4 Silent p.R198R 0.34 TCGA-05-4427-01 11 123777895 123777895 G T OR8D4 Missense_Mutation p.G253W 0.13 deleterious(0) probably_damaging(1) TCGA-05-4427-01 11 123886590 123886590 C A OR10G4 Missense_Mutation p.F103L 0.15 tolerated(0.15) possibly_damaging(0.685) TCGA-05-4427-01 11 123894254 123894254 G A OR10G9 Missense_Mutation p.D179N 0.13 deleterious(0.01) probably_damaging(1) TCGA-05-4427-01 11 124857874 124857874 T G CCDC15 Missense_Mutation p.D584E 0.16 tolerated(0.43) benign(0.002) TCGA-05-4427-01 11 126073362 126073362 T C RPUSD4 Missense_Mutation p.N362S 0.45 tolerated(1) benign(0.002) TCGA-05-4427-01 11 130343343 130343343 G T ADAMTS15 Missense_Mutation p.S827I 0.19 tolerated(0.05) benign(0.025) TCGA-05-4427-01 11 131781455 131781455 C A NTM Missense_Mutation p.T27K 0.19 tolerated(0.17) benign(0.287) TCGA-05-4427-01 11 132204969 132204969 G T NTM Missense_Mutation p.G333C 0.15 deleterious(0.03) benign(0.3) TCGA-05-4427-01 11 14880790 14880790 A T PDE3B Nonsense_Mutation p.K908* 0.22 TCGA-05-4427-01 11 18436798 18436798 T G LDHC Missense_Mutation p.L65R 0.15 deleterious(0) probably_damaging(1) TCGA-05-4427-01 11 18759424 18759424 C A PTPN5 Intron 0.10 TCGA-05-4427-01 11 21592381 21592381 A G NELL1 Silent p.P684P 0.14 TCGA-05-4427-01 11 22397598 22397598 C A SLC17A6 Missense_Mutation p.F415L 0.16 tolerated(0.25) benign(0.074) TCGA-05-4427-01 11 28134865 28134865 A G METTL15 Intron 0.16 TCGA-05-4427-01 11 30033267 30033267 G T KCNA4 Missense_Mutation p.S320Y 0.36 deleterious(0) probably_damaging(0.998) TCGA-05-4427-01 11 30033321 30033321 C A KCNA4 Missense_Mutation p.S302I 0.40 deleterious(0) probably_damaging(0.993) TCGA-05-4427-01 11 31312225 31312225 T C DCDC1 Missense_Mutation p.E310G 0.11 deleterious(0.01) possibly_damaging(0.661) TCGA-05-4427-01 11 3249691 3249691 G T MRGPRE Silent p.L112L 0.65 TCGA-05-4427-01 11 35219769 35219769 G T CD44 Missense_Mutation p.D300Y 0.23 deleterious(0) probably_damaging(0.986) TCGA-05-4427-01 11 35308338 35308338 C G SLC1A2 Missense_Mutation p.V418L 0.18 tolerated(0.38) benign(0.014) TCGA-05-4427-01 11 36057708 36057708 C G LDLRAD3 Missense_Mutation p.N34K 0.16 deleterious(0.02) benign(0.166) TCGA-05-4427-01 11 4103450 4103450 G T STIM1 Nonsense_Mutation p.E336* 0.15 TCGA-05-4427-01 11 44101139 44101139 G T ACCS Missense_Mutation p.V298F 0.12 deleterious(0.01) benign(0.392) TCGA-05-4427-01 11 4471181 4471181 G T OR52K2 Silent p.V204V 0.37 TCGA-05-4427-01 11 4790663 4790663 A C OR51F1 Missense_Mutation p.L162R 0.08 tolerated(0.12) probably_damaging(0.928) TCGA-05-4427-01 11 4843196 4843196 A G OR51F2 Missense_Mutation p.Y194C 0.14 deleterious(0.04) probably_damaging(1) TCGA-05-4427-01 11 4843569 4843569 C T OR51F2 Silent p.I318I 0.11 TCGA-05-4427-01 11 5247887 5247887 G T HBB Missense_Mutation p.L79M 0.16 tolerated(0.57) possibly_damaging(0.631) TCGA-05-4427-01 11 5269692 5269692 A T HBG1 Missense_Mutation p.V114D 0.12 deleterious(0) probably_damaging(0.991) TCGA-05-4427-01 11 5274610 5274610 A T HBG2 Missense_Mutation p.V114D 0.34 deleterious(0) probably_damaging(0.991) TCGA-05-4427-01 11 5462407 5462407 T C OR51I1 Missense_Mutation p.E113G 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-05-4427-01 11 55135949 55135949 G T OR4A15 Missense_Mutation p.C197F 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-05-4427-01 11 55433215 55433215 C A OR4C6 Missense_Mutation p.H191Q 0.14 tolerated_low_confidence(0.07) benign(0.034) TCGA-05-4427-01 11 55587576 55587576 C T OR5D18 Silent p.S157S 0.20 TCGA-05-4427-01 11 55595192 55595192 C A OR5L2 Silent p.I166I 0.44 TCGA-05-4427-01 11 55595308 55595308 T G OR5L2 Missense_Mutation p.L205W 0.16 deleterious(0) possibly_damaging(0.494) TCGA-05-4427-01 11 55606301 55606301 T A OR5D16 Missense_Mutation p.L25Q 0.20 deleterious(0) probably_damaging(0.954) TCGA-05-4427-01 11 55761719 55761719 C T OR5F1 Missense_Mutation p.R128H 0.22 deleterious(0.03) benign(0.001) TCGA-05-4427-01 11 55761971 55761971 C A OR5F1 Missense_Mutation p.G44V 0.23 deleterious(0.02) benign(0.194) TCGA-05-4427-01 11 55861488 55861488 G T OR8I2 Missense_Mutation p.K235N 0.18 deleterious(0) possibly_damaging(0.812) TCGA-05-4427-01 11 55861600 55861600 G T OR8I2 Missense_Mutation p.A273S 0.21 deleterious(0.05) probably_damaging(0.999) TCGA-05-4427-01 11 55872600 55872600 C A OR8H2 Missense_Mutation p.L28M 0.15 deleterious(0.01) possibly_damaging(0.696) TCGA-05-4427-01 11 56113544 56113544 G C OR8K1 Silent p.T10T 0.13 TCGA-05-4427-01 11 57004350 57004350 G A APLNR Silent p.T43T 0.37 TCGA-05-4427-01 11 57971444 57971444 G A OR1S2 Silent p.T70T 0.15 TCGA-05-4427-01 11 58206760 58206760 T A OR5B12 Missense_Mutation p.S289C 0.15 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-05-4427-01 11 587399 587399 G C PHRF1 Missense_Mutation p.A119P 0.09 deleterious(0.02) benign(0.113) TCGA-05-4427-01 11 62458593 62458593 G C BSCL2 Missense_Mutation p.D342E 0.16 tolerated(0.27) benign(0.007) TCGA-05-4427-01 11 62569425 62569425 C A NXF1 Nonsense_Mutation p.E183* 0.16 TCGA-05-4427-01 11 62933577 62933577 G A SLC22A25 Silent p.S408S 0.21 TCGA-05-4427-01 11 66099706 66099706 C A RIN1 3'UTR 0.50 TCGA-05-4427-01 11 6816387 6816387 C A OR6A2 Missense_Mutation p.D185Y 0.14 deleterious(0) probably_damaging(1) TCGA-05-4427-01 11 6891205 6891205 G T OR10A2 Missense_Mutation p.A74S 0.38 tolerated(0.91) benign(0.002) TCGA-05-4427-01 11 6977658 6977658 C G ZNF215 Missense_Mutation p.H484D 0.11 deleterious(0) probably_damaging(0.997) TCGA-05-4427-01 11 6977683 6977683 G A ZNF215 Missense_Mutation p.C492Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-05-4427-01 11 71946456 71946456 G A INPPL1 Missense_Mutation p.V874M 0.17 deleterious(0) probably_damaging(0.986) TCGA-05-4427-01 11 7982455 7982455 G T NLRP10 Missense_Mutation p.T235K 0.42 tolerated(0.72) benign(0.027) TCGA-05-4427-01 11 88742218 88742218 A T GRM5 Intron 0.33 TCGA-05-4427-01 11 89883659 89883659 G T NAALAD2 Missense_Mutation p.V165L 0.17 deleterious(0.01) benign(0.017) TCGA-05-4427-01 11 92087844 92087844 A G FAT3 Missense_Mutation p.R856G 0.24 benign(0.099) TCGA-05-4427-01 11 92533467 92533467 G T FAT3 Nonsense_Mutation p.E2430* 0.13 TCGA-05-4427-01 11 9466700 9466700 A T IPO7 Missense_Mutation p.S1026C 0.11 deleterious(0) possibly_damaging(0.664) TCGA-05-4427-01 11 9598729 9598729 G T WEE1 Nonsense_Mutation p.G354* 0.15 TCGA-05-4427-01 11 99932087 99932087 G A CNTN5 Missense_Mutation p.R375H 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-05-4427-01 12 100042480 100042480 A G FAM71C Silent p.P176P 0.17 TCGA-05-4427-01 12 101880362 101880362 G - SPIC Frame_Shift_Del p.K188Sfs*2 0.37 TCGA-05-4427-01 12 103984672 103984672 C T STAB2 Intron 0.09 TCGA-05-4427-01 12 109292563 109292563 C A DAO Silent p.P268P 0.35 TCGA-05-4427-01 12 109306390 109306390 C T SVOP Missense_Mutation p.R458Q 0.29 tolerated(0.3) benign(0.052) TCGA-05-4427-01 12 110628820 110628820 G C IFT81 Missense_Mutation p.M478I 0.16 tolerated(0.25) benign(0) TCGA-05-4427-01 12 111801145 111801145 C T FAM109A Silent p.G42G 0.69 TCGA-05-4427-01 12 112650355 112650355 C A HECTD4 Missense_Mutation p.R2376L 0.35 possibly_damaging(0.869) TCGA-05-4427-01 12 113537595 113537595 C G RASAL1 3'UTR 0.17 TCGA-05-4427-01 12 115117764 115117764 G - TBX3 Frame_Shift_Del p.P224Qfs*19 0.30 TCGA-05-4427-01 12 120576189 120576189 C A GCN1L1 Missense_Mutation p.D2063Y 0.14 probably_damaging(0.969) TCGA-05-4427-01 12 120586150 120586150 C A GCN1L1 Missense_Mutation p.G1516V 0.57 probably_damaging(0.999) TCGA-05-4427-01 12 122199630 122199630 C T TMEM120B Silent p.I179I 0.09 TCGA-05-4427-01 12 124155736 124155736 G C TCTN2 5'UTR 0.36 TCGA-05-4427-01 12 125449018 125449018 C T DHX37 Missense_Mutation p.R656H 0.13 tolerated(0.23) benign(0.052) TCGA-05-4427-01 12 126137136 126137136 C G TMEM132B Silent p.V683V 0.09 TCGA-05-4427-01 12 126138765 126138765 T C TMEM132B Silent p.L916L 0.08 TCGA-05-4427-01 12 132466997 132466997 G T EP400 Missense_Mutation p.A635S 0.17 unknown(0) TCGA-05-4427-01 12 133218912 133218912 C T POLE Missense_Mutation p.R1675H 0.53 deleterious(0) probably_damaging(1) TCGA-05-4427-01 12 133331553 133331553 C A ANKLE2 Missense_Mutation p.R116S 0.10 tolerated(0.77) benign(0.001) TCGA-05-4427-01 12 133732389 133732389 A T ZNF10 Missense_Mutation p.H186L 0.11 tolerated(0.17) benign(0.011) TCGA-05-4427-01 12 13715993 13715993 G C GRIN2B Missense_Mutation p.D1393E 0.38 tolerated(0.09) probably_damaging(0.999) TCGA-05-4427-01 12 18747456 18747456 C A PIK3C2G Missense_Mutation p.S1306Y 0.30 deleterious(0.02) probably_damaging(0.936) TCGA-05-4427-01 12 1949933 1949933 G T CACNA2D4 Silent p.T841T 0.55 TCGA-05-4427-01 12 21652495 21652495 C A RECQL Missense_Mutation p.V4F 0.08 tolerated(0.09) benign(0.007) TCGA-05-4427-01 12 24365400 24365400 C A MIR920 RNA 0.11 TCGA-05-4427-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.37 deleterious(0) possibly_damaging(0.479) TCGA-05-4427-01 12 2791141 2791141 G T CACNA1C Intron 0.65 TCGA-05-4427-01 12 29911649 29911649 A G TMTC1 Missense_Mutation p.L181P 0.11 deleterious(0) probably_damaging(0.998) TCGA-05-4427-01 12 3126676 3126676 G T TEAD4 Missense_Mutation p.R156L 0.73 tolerated(0.66) benign(0) TCGA-05-4427-01 12 31632706 31632706 G C DENND5B Missense_Mutation p.P241A 0.50 tolerated(0.11) benign(0.042) TCGA-05-4427-01 12 3923203 3923203 C A PARP11 Nonsense_Mutation p.G234* 0.16 TCGA-05-4427-01 12 39994472 39994472 C T ABCD2 Missense_Mutation p.G516E 0.53 deleterious(0) probably_damaging(0.938) TCGA-05-4427-01 12 42499723 42499723 C A GXYLT1 Missense_Mutation p.G254V 0.54 deleterious(0) probably_damaging(0.989) TCGA-05-4427-01 12 42499724 42499724 C T GXYLT1 Missense_Mutation p.G254R 0.54 deleterious(0) probably_damaging(0.997) TCGA-05-4427-01 12 43822102 43822102 T C ADAMTS20 Missense_Mutation p.N1296S 0.25 tolerated(0.16) benign(0.281) TCGA-05-4427-01 12 45784253 45784253 C A ANO6 Missense_Mutation p.T474N 0.25 tolerated(0.17) possibly_damaging(0.456) TCGA-05-4427-01 12 46760912 46760912 C T SLC38A2 Missense_Mutation p.G143E 0.10 deleterious(0) probably_damaging(0.999) TCGA-05-4427-01 12 49950228 49950228 G A KCNH3 Silent p.P848P 0.09 TCGA-05-4427-01 12 49993982 49993982 C G FAM186B Missense_Mutation p.E481Q 0.44 tolerated(0.19) probably_damaging(0.973) TCGA-05-4427-01 12 55641405 55641405 C A OR6C74 Missense_Mutation p.L112I 0.12 deleterious_low_confidence(0.03) probably_damaging(0.994) TCGA-05-4427-01 12 57588382 57588382 T C LRP1 Silent p.P2697P 0.47 TCGA-05-4427-01 12 58128445 58128445 G A AGAP2 Silent p.A415A 0.55 TCGA-05-4427-01 12 62708623 62708623 C T USP15 Missense_Mutation p.T134I 0.12 tolerated(0.28) benign(0.168) TCGA-05-4427-01 12 69264028 69264028 C G CPM Missense_Mutation p.V195L 0.06 tolerated(0.06) benign(0.301) TCGA-05-4427-01 12 7805093 7805093 C T APOBEC1 Missense_Mutation p.R128Q 0.72 deleterious(0.02) possibly_damaging(0.745) TCGA-05-4427-01 12 9355209 9355209 G A PZP Silent p.F113F 0.09 TCGA-05-4427-01 12 93968706 93968706 T G SOCS2 Silent p.L116L 0.47 TCGA-05-4427-01 13 101710363 101710363 C T NALCN Missense_Mutation p.G1651R 0.29 tolerated(0.06) benign(0.055) TCGA-05-4427-01 13 103528219 103528219 T C ERCC5 Missense_Mutation p.L1176P 0.27 tolerated(0.26) unknown(0) TCGA-05-4427-01 13 103718394 103718394 C T SLC10A2 Missense_Mutation p.C69Y 0.16 tolerated(1) benign(0.029) TCGA-05-4427-01 13 110822946 110822946 G C COL4A1 Silent p.A1230A 0.25 TCGA-05-4427-01 13 23915308 23915308 G A SACS Silent p.L903L 0.32 TCGA-05-4427-01 13 25268600 25268600 G A ATP12A Missense_Mutation p.A472T 0.36 deleterious(0) probably_damaging(0.999) TCGA-05-4427-01 13 25672221 25672221 C A PABPC3 Missense_Mutation p.P629T 0.26 tolerated_low_confidence(0.11) benign(0.012) TCGA-05-4427-01 13 31231663 31231663 G A USPL1 Silent p.K483K 0.05 TCGA-05-4427-01 13 31495871 31495871 A T MEDAG Silent p.S225S 0.37 TCGA-05-4427-01 13 31543049 31543049 G T TEX26 Missense_Mutation p.R225M 0.19 deleterious(0.02) benign(0.2) TCGA-05-4427-01 13 32914849 32914849 C T BRCA2 Silent p.N2119N 0.26 TCGA-05-4427-01 13 32944679 32944679 A T BRCA2 Missense_Mutation p.R2824S 0.25 deleterious(0) probably_damaging(1) TCGA-05-4427-01 13 39425876 39425876 C - FREM2 Frame_Shift_Del p.P2266Lfs*7 0.25 TCGA-05-4427-01 13 39540831 39540831 G T STOML3 3'UTR 0.50 TCGA-05-4427-01 13 39587831 39587831 C G PROSER1 Missense_Mutation p.A520P 0.35 tolerated_low_confidence(0.12) benign(0.006) TCGA-05-4427-01 13 39587866 39587866 G C PROSER1 Missense_Mutation p.S508C 0.32 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-05-4427-01 13 41134699 41134699 C A FOXO1 Missense_Mutation p.W310L 0.30 deleterious(0) probably_damaging(0.986) TCGA-05-4427-01 13 42769083 42769083 G C DGKH Missense_Mutation p.V700L 0.29 tolerated(0.82) benign(0.001) TCGA-05-4427-01 13 43918814 43918814 G T ENOX1 Missense_Mutation p.S299Y 0.20 deleterious(0) possibly_damaging(0.459) TCGA-05-4427-01 13 46658366 46658366 C T CPB2 Missense_Mutation p.G88E 0.13 tolerated(1) benign(0.163) TCGA-05-4427-01 13 47011991 47011991 G A PPP1R2P4 RNA 0.30 TCGA-05-4427-01 13 52542619 52542619 C A ATP7B Missense_Mutation p.M556I 0.39 tolerated(0.84) benign(0.004) TCGA-05-4427-01 13 52542620 52542620 A T ATP7B Missense_Mutation p.M556K 0.38 deleterious(0) benign(0.298) TCGA-05-4427-01 13 75884279 75884279 C A TBC1D4 Missense_Mutation p.D798Y 0.57 deleterious(0) possibly_damaging(0.832) TCGA-05-4427-01 13 75884280 75884280 C A TBC1D4 Missense_Mutation p.L797F 0.55 tolerated(0.71) benign(0.008) TCGA-05-4427-01 13 86369000 86369000 G T SLITRK6 Silent p.S548S 0.39 TCGA-05-4427-01 13 86369001 86369001 G T SLITRK6 Missense_Mutation p.S548Y 0.38 deleterious(0) possibly_damaging(0.878) TCGA-05-4427-01 13 94482694 94482694 G T GPC6 Missense_Mutation p.V203L 0.38 deleterious(0.05) possibly_damaging(0.61) TCGA-05-4427-01 14 105170250 105170250 C T INF2 Intron 0.34 TCGA-05-4427-01 14 105410706 105410706 G A AHNAK2 Silent p.D3694D 0.17 TCGA-05-4427-01 14 19571374 19571374 G T POTEG Nonsense_Mutation p.E385* 0.15 TCGA-05-4427-01 14 20248529 20248529 C A OR4M1 Silent p.G16G 0.21 TCGA-05-4427-01 14 20248530 20248530 C G OR4M1 Missense_Mutation p.L17V 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-05-4427-01 14 20502482 20502482 A C OR4K13 Missense_Mutation p.L146V 0.05 tolerated(1) benign(0.032) TCGA-05-4427-01 14 20612634 20612634 T C OR4N5 Missense_Mutation p.I247T 0.12 deleterious(0) benign(0.347) TCGA-05-4427-01 14 21992359 21992359 C T SALL2 Silent p.T501T 0.13 TCGA-05-4427-01 14 22038868 22038868 C G OR10G3 Missense_Mutation p.R3T 0.10 tolerated(0.67) benign(0.001) TCGA-05-4427-01 14 22180802 22180802 G A TRAV2 Missense_Mutation p.S25N 0.09 tolerated(0.24) benign(0.246) TCGA-05-4427-01 14 22574056 22574056 G T TRAV24 Missense_Mutation p.E92D 0.56 tolerated(0.26) benign(0.085) TCGA-05-4427-01 14 22631734 22631734 G T TRAV29DV5 Missense_Mutation p.G109V 0.13 deleterious(0) possibly_damaging(0.904) TCGA-05-4427-01 14 23567325 23567325 A T C14orf119 3'UTR 0.39 TCGA-05-4427-01 14 23596443 23596443 G A SLC7A8 Silent p.P517P 0.29 TCGA-05-4427-01 14 23886822 23886822 C G MYH7 Missense_Mutation p.E1415Q 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-05-4427-01 14 24040527 24040527 C T JPH4 Nonsense_Mutation p.W471* 0.49 TCGA-05-4427-01 14 24566274 24566274 C G PCK2 Missense_Mutation p.A68G 0.10 tolerated(0.07) benign(0.13) TCGA-05-4427-01 14 24608594 24608594 G A EMC9 Missense_Mutation p.R139C 0.07 deleterious(0.04) benign(0.005) TCGA-05-4427-01 14 31099691 31099691 T G SCFD1 Missense_Mutation p.I47M 0.13 deleterious(0) probably_damaging(0.963) TCGA-05-4427-01 14 34269137 34269137 G A NPAS3 Missense_Mutation p.A542T 0.16 tolerated(0.07) possibly_damaging(0.811) TCGA-05-4427-01 14 34419597 34419597 C A EGLN3 Intron 0.49 TCGA-05-4427-01 14 39818034 39818034 G T CTAGE5 Missense_Mutation p.G706C 0.34 deleterious(0) probably_damaging(0.924) TCGA-05-4427-01 14 42357003 42357003 C A LRFN5 Missense_Mutation p.P392H 0.16 deleterious(0) possibly_damaging(0.897) TCGA-05-4427-01 14 47120772 47120772 T G RPL10L Missense_Mutation p.E56D 0.10 deleterious(0.03) benign(0.172) TCGA-05-4427-01 14 50074788 50074788 A G LRR1 Missense_Mutation p.Q318R 0.26 tolerated(0.22) benign(0.027) TCGA-05-4427-01 14 51080040 51080040 G C ATL1 Missense_Mutation p.G232R 0.09 deleterious(0) probably_damaging(1) TCGA-05-4427-01 14 52507389 52507389 A T NID2 Missense_Mutation p.L669Q 0.35 deleterious(0) probably_damaging(0.948) TCGA-05-4427-01 14 52526869 52526869 G T NID2 Missense_Mutation p.T247N 0.15 tolerated(0.4) benign(0.259) TCGA-05-4427-01 14 52781861 52781861 C A PTGER2 Missense_Mutation p.L199M 0.30 tolerated(0.07) possibly_damaging(0.855) TCGA-05-4427-01 14 56763321 56763321 G T PELI2 Nonsense_Mutation p.E234* 0.21 TCGA-05-4427-01 14 58730469 58730469 C T PSMA3 Missense_Mutation p.T175M 0.08 deleterious(0) probably_damaging(0.939) TCGA-05-4427-01 14 58955345 58955345 G A KIAA0586 Missense_Mutation p.M1231I 0.25 deleterious(0.02) probably_damaging(0.993) TCGA-05-4427-01 14 59112833 59112833 C A DACT1 Missense_Mutation p.Q498K 0.21 tolerated(1) benign(0.002) TCGA-05-4427-01 14 59113737 59113737 C A DACT1 Missense_Mutation p.P799Q 0.27 tolerated(0.14) benign(0.046) TCGA-05-4427-01 14 61201479 61201479 A G MNAT1 5'Flank 0.67 TCGA-05-4427-01 14 62547824 62547824 G T SYT16 Missense_Mutation p.K422N 0.44 deleterious(0.01) benign(0.217) TCGA-05-4427-01 14 63174404 63174404 G T KCNH5 Missense_Mutation p.A930D 0.24 tolerated_low_confidence(0.63) benign(0.063) TCGA-05-4427-01 14 65543306 65543306 G A MAX Missense_Mutation p.T124I 0.10 deleterious(0.02) benign(0.313) TCGA-05-4427-01 14 71206862 71206862 C A MAP3K9 Silent p.T529T 0.35 TCGA-05-4427-01 14 73459868 73459868 T A ZFYVE1 Missense_Mutation p.I396F 0.12 deleterious(0) possibly_damaging(0.714) TCGA-05-4427-01 14 76241935 76241935 G T TTLL5 Missense_Mutation p.A749S 0.31 tolerated(0.31) possibly_damaging(0.852) TCGA-05-4427-01 14 76905865 76905865 G T ESRRB Missense_Mutation p.D57Y 0.31 deleterious(0) probably_damaging(0.971) TCGA-05-4427-01 14 77796651 77796651 A T GSTZ1 Splice_Site p.X159_splice 0.25 TCGA-05-4427-01 14 79175831 79175831 G A NRXN3 Missense_Mutation p.R125Q 0.12 tolerated(0.13) probably_damaging(0.959) TCGA-05-4427-01 14 79434533 79434533 G T NRXN3 Missense_Mutation p.G623C 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-05-4427-01 14 81554321 81554321 T A TSHR Nonsense_Mutation p.L114* 0.22 TCGA-05-4427-01 14 81744066 81744066 A T STON2 Missense_Mutation p.L530Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-05-4427-01 14 88729806 88729806 G A KCNK10 Silent p.L48L 0.20 TCGA-05-4427-01 14 88729829 88729829 G C KCNK10 Missense_Mutation p.P40R 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.884) TCGA-05-4427-01 14 91772188 91772188 T G CCDC88C Missense_Mutation p.Q1093P 0.17 deleterious(0) probably_damaging(0.998) TCGA-05-4427-01 14 94103593 94103593 C A UNC79 Missense_Mutation p.N1778K 0.15 deleterious_low_confidence(0.04) benign(0.082) TCGA-05-4427-01 14 94160683 94160683 G T UNC79 Missense_Mutation p.M2353I 0.17 deleterious(0.01) benign(0.009) TCGA-05-4427-01 14 94772431 94772431 C G SERPINA6 Missense_Mutation p.D337H 0.27 tolerated(0.09) possibly_damaging(0.706) TCGA-05-4427-01 14 95030062 95030062 C A SERPINA4 Missense_Mutation p.S81R 0.13 deleterious(0) probably_damaging(1) TCGA-05-4427-01 14 95053825 95053825 C A SERPINA5 Silent p.P42P 0.32 TCGA-05-4427-01 14 95058540 95058540 C A SERPINA5 Missense_Mutation p.N395K 0.30 tolerated(0.42) benign(0.42) TCGA-05-4427-01 14 95571475 95571475 C T DICER1 Missense_Mutation p.E1068K 0.13 deleterious(0.02) probably_damaging(0.997) TCGA-05-4427-01 15 100173355 100173355 A G MEF2A Missense_Mutation p.I11V 0.33 deleterious(0.02) benign(0.271) TCGA-05-4427-01 15 101972301 101972301 T C PCSK6 Missense_Mutation p.K135R 0.12 tolerated(0.37) benign(0.005) TCGA-05-4427-01 15 102346731 102346731 T G OR4F6 Missense_Mutation p.F270C 0.04 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-05-4427-01 15 20874904 20874904 G T NBEAP1 RNA 0.24 TCGA-05-4427-01 15 23300072 23300072 C T HERC2P2 RNA 0.36 TCGA-05-4427-01 15 25417790 25417790 G C SNORD115-2 RNA 0.40 TCGA-05-4427-01 15 25436420 25436420 C A SNORD115-11 3'Flank 0.18 TCGA-05-4427-01 15 27185194 27185194 C G GABRA5 Missense_Mutation p.R283G 0.30 deleterious(0) probably_damaging(0.939) TCGA-05-4427-01 15 27777962 27777962 G T GABRG3 Missense_Mutation p.V447F 0.21 deleterious(0) probably_damaging(0.999) TCGA-05-4427-01 15 28000606 28000606 T A OCA2 Silent p.P815P 0.21 TCGA-05-4427-01 15 28326902 28326902 C T OCA2 Missense_Mutation p.R40Q 0.11 tolerated_low_confidence(1) benign(0.001) TCGA-05-4427-01 15 30654970 30654970 C G CHRFAM7A Missense_Mutation p.M255I 0.24 deleterious(0.02) possibly_damaging(0.672) TCGA-05-4427-01 15 31202973 31202973 C A FAN1 Missense_Mutation p.T511N 0.36 tolerated(0.07) possibly_damaging(0.901) TCGA-05-4427-01 15 34015011 34015011 G T RYR3 Missense_Mutation p.G2239W 0.39 probably_damaging(1) TCGA-05-4427-01 15 40751681 40751681 C T BAHD1 Nonsense_Mutation p.Q340* 0.32 TCGA-05-4427-01 15 43891507 43891507 G A CKMT1B 3'UTR 0.06 TCGA-05-4427-01 15 48414122 48414122 C A SLC24A5 Missense_Mutation p.R64S 0.24 deleterious(0.04) benign(0.389) TCGA-05-4427-01 15 48766841 48766841 T A FBN1 Missense_Mutation p.N1324I 0.18 benign(0.125) TCGA-05-4427-01 15 54007479 54007479 T C WDR72 Missense_Mutation p.K142R 0.14 tolerated(0.24) benign(0.043) TCGA-05-4427-01 15 54305853 54305853 G T UNC13C Missense_Mutation p.Q251H 0.23 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-05-4427-01 15 57976837 57976837 C G GCOM1 Intron 0.12 TCGA-05-4427-01 15 58855785 58855785 G C LIPC Missense_Mutation p.K417N 0.53 tolerated(0.07) benign(0.084) TCGA-05-4427-01 15 60970879 60970879 G C RP11-219B17.2 5'Flank 0.19 TCGA-05-4427-01 15 60970880 60970880 A T RP11-219B17.2 5'Flank 0.18 TCGA-05-4427-01 15 62276213 62276213 T C VPS13C Splice_Site p.X574_splice 0.28 TCGA-05-4427-01 15 64045285 64045285 C A HERC1 Splice_Site p.X592_splice 0.20 TCGA-05-4427-01 15 66795622 66795622 G A RPL4 Intron 0.39 TCGA-05-4427-01 15 67692483 67692483 A G IQCH Missense_Mutation p.D646G 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-05-4427-01 15 73995330 73995330 G A CD276 Silent p.L212L 0.13 TCGA-05-4427-01 15 74315475 74315475 G T PML Silent p.A303A 0.37 TCGA-05-4427-01 15 74327366 74327366 G A PML Intron 0.38 TCGA-05-4427-01 15 75500971 75500971 C T C15orf39 Missense_Mutation p.S861F 0.21 tolerated(0.06) benign(0.213) TCGA-05-4427-01 15 78398247 78398247 C - CIB2 Frame_Shift_Del p.E126Rfs*5 0.29 TCGA-05-4427-01 15 78838104 78838104 G T PSMA4 Missense_Mutation p.A169S 0.27 tolerated(0.79) benign(0.016) TCGA-05-4427-01 15 78917515 78917515 T A CHRNB4 Missense_Mutation p.H486L 0.40 tolerated(0.33) benign(0.193) TCGA-05-4427-01 15 80750291 80750291 T C ARNT2 Silent p.D56D 0.09 TCGA-05-4427-01 15 80884026 80884026 G T ARNT2 Missense_Mutation p.G679V 0.18 deleterious_low_confidence(0.03) possibly_damaging(0.584) TCGA-05-4427-01 15 81630234 81630234 G C TMC3 Missense_Mutation p.R705G 0.44 deleterious(0.05) possibly_damaging(0.688) TCGA-05-4427-01 15 83332643 83332643 G T AP3B2 Silent p.G763G 0.45 TCGA-05-4427-01 15 84651759 84651759 G T ADAMTSL3 Nonsense_Mutation p.E1127* 0.24 TCGA-05-4427-01 15 85345528 85345528 G - ZNF592 Frame_Shift_Del p.G1237Afs*73 0.26 TCGA-05-4427-01 15 89807159 89807159 G T FANCI Missense_Mutation p.V191L 0.42 tolerated(1) benign(0.001) TCGA-05-4427-01 15 90023572 90023572 C A RHCG Missense_Mutation p.R197L 0.38 tolerated(0.67) benign(0.025) TCGA-05-4427-01 15 91423351 91423351 G T FURIN Silent p.R468R 0.20 TCGA-05-4427-01 15 93487673 93487673 G C CHD2 Missense_Mutation p.E361Q 0.05 deleterious(0) probably_damaging(0.965) TCGA-05-4427-01 15 99442824 99442824 C T IGF1R Silent p.L407L 0.14 TCGA-05-4427-01 16 15222118 15222118 G T RP11-1186N24.5 RNA 0.32 TCGA-05-4427-01 16 1573703 1573703 T A IFT140 Splice_Site p.X1091_splice 0.28 TCGA-05-4427-01 16 1608043 1608043 C A IFT140 Silent p.G764G 0.29 TCGA-05-4427-01 16 18853097 18853097 C T SMG1 Silent p.L2162L 0.32 TCGA-05-4427-01 16 20370825 20370825 G A PDILT Missense_Mutation p.P524L 0.27 tolerated_low_confidence(0.07) benign(0.076) TCGA-05-4427-01 16 20548512 20548512 G T ACSM2B 3'UTR 0.27 TCGA-05-4427-01 16 20548589 20548589 A T ACSM2B Silent p.R575R 0.35 TCGA-05-4427-01 16 20702562 20702562 C A ACSM1 5'UTR 0.39 TCGA-05-4427-01 16 21328200 21328200 T - CRYM-AS1 RNA 0.13 TCGA-05-4427-01 16 22144268 22144268 C A VWA3A Silent p.L640L 0.22 TCGA-05-4427-01 16 22558209 22558209 G T RP11-368J21.3 RNA 0.30 TCGA-05-4427-01 16 28883539 28883539 G T SH2B1 Missense_Mutation p.E514D 0.23 tolerated(0.26) benign(0.002) TCGA-05-4427-01 16 31371152 31371152 G T ITGAX Splice_Site p.X187_splice 0.18 TCGA-05-4427-01 16 3304165 3304165 C A MEFV Silent p.S301S 0.32 TCGA-05-4427-01 16 48242392 48242392 C A ABCC11 Missense_Mutation p.V542F 0.08 deleterious(0) possibly_damaging(0.756) TCGA-05-4427-01 16 48258303 48258303 C T ABCC11 Missense_Mutation p.G145R 0.13 deleterious(0.01) probably_damaging(1) TCGA-05-4427-01 16 4927035 4927035 C T UBN1 Missense_Mutation p.S1063F 0.13 deleterious(0.01) benign(0.429) TCGA-05-4427-01 16 55539339 55539339 C A MMP2 Missense_Mutation p.D656E 0.12 deleterious(0.01) benign(0.145) TCGA-05-4427-01 16 55600831 55600831 C A CAPNS2 Missense_Mutation p.Q55K 0.19 tolerated(0.15) benign(0.005) TCGA-05-4427-01 16 55903522 55903522 C G CES5A Splice_Site p.X213_splice 0.17 TCGA-05-4427-01 16 56226147 56226147 C A GNAO1 5'UTR 0.19 TCGA-05-4427-01 16 68156554 68156554 C T NFATC3 Silent p.S256S 0.31 TCGA-05-4427-01 16 77356301 77356301 C T ADAMTS18 Missense_Mutation p.G699S 0.19 tolerated(0.74) benign(0.003) TCGA-05-4427-01 16 81208465 81208465 C A PKD1L2 Nonsense_Mutation p.E136* 0.23 TCGA-05-4427-01 16 83250957 83250957 A T CDH13 Missense_Mutation p.D211V 0.41 deleterious(0.02) benign(0.02) TCGA-05-4427-01 16 84188285 84188285 G T DNAAF1 Missense_Mutation p.E152D 0.15 tolerated(0.14) benign(0.315) TCGA-05-4427-01 17 10304708 10304708 C G MYH8 Missense_Mutation p.E998Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-05-4427-01 17 10358081 10358081 C A MYH4 Missense_Mutation p.V828L 0.08 tolerated(0.14) probably_damaging(0.989) TCGA-05-4427-01 17 10399606 10399606 C A MYH1 Missense_Mutation p.M1639I 0.17 tolerated(0.08) benign(0.005) TCGA-05-4427-01 17 10535202 10535202 C A MYH3 Silent p.T1696T 0.21 TCGA-05-4427-01 17 11513788 11513788 G A DNAH9 Silent p.V230V 0.12 TCGA-05-4427-01 17 11593607 11593609 TTC - DNAH9 In_Frame_Del p.F1491del 0.28 TCGA-05-4427-01 17 11687034 11687034 C A DNAH9 Missense_Mutation p.A2597E 0.39 possibly_damaging(0.839) TCGA-05-4427-01 17 11725916 11725916 G T DNAH9 Missense_Mutation p.E3004D 0.18 benign(0.013) TCGA-05-4427-01 17 11865225 11865225 T A DNAH9 Missense_Mutation p.N4295K 0.08 benign(0.141) TCGA-05-4427-01 17 12883544 12883544 C T ARHGAP44 Missense_Mutation p.R645W 0.14 deleterious(0) possibly_damaging(0.84) TCGA-05-4427-01 17 19287945 19287945 C T MFAP4 Missense_Mutation p.A224T 0.12 deleterious(0) probably_damaging(0.991) TCGA-05-4427-01 17 20108353 20108353 T G SPECC1 Missense_Mutation p.F331V 0.03 deleterious(0.01) probably_damaging(0.998) TCGA-05-4427-01 17 21101848 21101848 C T TMEM11 Missense_Mutation p.G123E 0.29 tolerated(0.08) possibly_damaging(0.479) TCGA-05-4427-01 17 26094750 26094750 C G NOS2 Missense_Mutation p.Q716H 0.15 deleterious(0.03) benign(0.019) TCGA-05-4427-01 17 26912943 26912943 A C SPAG5 Missense_Mutation p.L560R 0.19 tolerated(0.13) probably_damaging(0.986) TCGA-05-4427-01 17 30551723 30551723 A G RHOT1 Missense_Mutation p.M683V 0.24 tolerated_low_confidence(0.29) benign(0.013) TCGA-05-4427-01 17 3195448 3195448 G T OR3A1 Silent p.V143V 0.48 TCGA-05-4427-01 17 32964910 32964910 C G TMEM132E Missense_Mutation p.P872A 0.30 tolerated(0.52) benign(0.311) TCGA-05-4427-01 17 33482441 33482441 G T UNC45B Missense_Mutation p.D256Y 0.40 tolerated(0.06) possibly_damaging(0.707) TCGA-05-4427-01 17 33520375 33520375 C A SLC35G3 Missense_Mutation p.G318C 0.16 deleterious(0.05) probably_damaging(0.993) TCGA-05-4427-01 17 33679960 33679960 G T SLFN11 Silent p.T707T 0.04 TCGA-05-4427-01 17 34263800 34263800 G - LYZL6 Frame_Shift_Del p.C112Wfs*12 0.19 TCGA-05-4427-01 17 34883451 34883451 G A MYO19 Silent p.P77P 0.11 TCGA-05-4427-01 17 35298037 35298037 G T LHX1 Silent p.L176L 0.22 TCGA-05-4427-01 17 37457329 37457329 C A FBXL20 Splice_Site p.X54_splice 0.46 TCGA-05-4427-01 17 37566333 37566333 G A MED1 Missense_Mutation p.S714L 0.32 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-05-4427-01 17 37817323 37817323 C T STARD3 Missense_Mutation p.T375M 0.15 tolerated(0.23) benign(0.053) TCGA-05-4427-01 17 38144947 38144947 C T PSMD3 Silent p.I187I 0.09 TCGA-05-4427-01 17 3840845 3840845 G A ATP2A3 Missense_Mutation p.S729L 0.41 tolerated(0.77) possibly_damaging(0.626) TCGA-05-4427-01 17 38976659 38976659 C T KRT10 Missense_Mutation p.R295Q 0.08 tolerated(1) benign(0.045) TCGA-05-4427-01 17 40459420 40459420 G T STAT5A Nonsense_Mutation p.E561* 0.53 TCGA-05-4427-01 17 42335508 42335508 G T SLC4A1 Silent p.G376G 0.39 TCGA-05-4427-01 17 45419355 45419355 G T EFCAB13 Missense_Mutation p.G87V 0.35 tolerated(0.05) benign(0.058) TCGA-05-4427-01 17 45821847 45821847 G T TBX21 Splice_Site p.X310_splice 0.33 TCGA-05-4427-01 17 4726030 4726030 G T PLD2 Missense_Mutation p.L891F 0.45 tolerated(0.13) benign(0.027) TCGA-05-4427-01 17 4937880 4937880 G T SLC52A1 Missense_Mutation p.R8S 0.51 tolerated(0.15) benign(0.349) TCGA-05-4427-01 17 5012905 5012905 C A ZNF232 Silent p.R94R 0.58 TCGA-05-4427-01 17 52991148 52991148 G T TOM1L1 Nonsense_Mutation p.E138* 0.27 TCGA-05-4427-01 17 5463315 5463315 C T NLRP1 Nonsense_Mutation p.W234* 0.26 TCGA-05-4427-01 17 56540405 56540405 C A HSF5 Missense_Mutation p.S427I 0.44 deleterious(0) probably_damaging(0.926) TCGA-05-4427-01 17 58236674 58236674 G T CA4 Silent p.L276L 0.33 TCGA-05-4427-01 17 58236675 58236675 G T CA4 Missense_Mutation p.G277W 0.33 deleterious(0) probably_damaging(0.999) TCGA-05-4427-01 17 61951015 61951015 G T CSH2 5'UTR 0.31 TCGA-05-4427-01 17 62270972 62270972 G C TEX2 Missense_Mutation p.S708C 0.28 deleterious(0.01) possibly_damaging(0.495) TCGA-05-4427-01 17 68128937 68128937 G T KCNJ16 Missense_Mutation p.D237Y 0.30 deleterious(0) probably_damaging(1) TCGA-05-4427-01 17 68172385 68172385 C G KCNJ2 Missense_Mutation p.T402R 0.05 tolerated(0.48) benign(0.011) TCGA-05-4427-01 17 72301377 72301377 G A DNAI2 Missense_Mutation p.G336E 0.19 deleterious(0) probably_damaging(0.977) TCGA-05-4427-01 17 7405315 7405315 G T POLR2A Missense_Mutation p.G816W 0.67 probably_damaging(1) TCGA-05-4427-01 17 74942515 74942515 G T MGAT5B Missense_Mutation p.A645S 0.12 tolerated(0.11) probably_damaging(0.918) TCGA-05-4427-01 17 7577097 7577097 C T TP53 Missense_Mutation p.D281N 0.53 deleterious(0.01) probably_damaging(0.996) TCGA-05-4427-01 17 76079138 76079138 A T TNRC6C Missense_Mutation p.Q1120L 0.37 deleterious(0.01) possibly_damaging(0.81) TCGA-05-4427-01 17 77078168 77078168 G T ENGASE Intron 0.34 TCGA-05-4427-01 17 7736826 7736826 C A DNAH2 Missense_Mutation p.A4420D 0.23 probably_damaging(1) TCGA-05-4427-01 17 78327389 78327389 G C RNF213 Missense_Mutation p.E3501Q 0.09 benign(0.017) TCGA-05-4427-01 17 80478022 80478022 G T FOXK2 Silent p.P86P 0.31 TCGA-05-4427-01 18 14780020 14780020 G T ANKRD30B Silent p.G494G 0.21 TCGA-05-4427-01 18 19192364 19192364 G T SNRPD1 5'UTR 0.15 TCGA-05-4427-01 18 30350257 30350257 G T KLHL14 Missense_Mutation p.P100T 0.42 tolerated_low_confidence(0.62) benign(0) TCGA-05-4427-01 18 31324687 31324687 G T ASXL3 Silent p.S1625S 0.36 TCGA-05-4427-01 18 31537451 31537451 A G NOL4 Silent p.L423L 0.13 TCGA-05-4427-01 18 33606995 33606995 C G RPRD1A Silent p.A219A 0.30 TCGA-05-4427-01 18 3879293 3879293 C T DLGAP1 Missense_Mutation p.C259Y 0.18 tolerated(0.08) benign(0.012) TCGA-05-4427-01 18 40323655 40323655 G T RIT2 Missense_Mutation p.Q153K 0.40 tolerated(0.53) benign(0.038) TCGA-05-4427-01 18 42533228 42533228 C A SETBP1 Missense_Mutation p.T1308K 0.26 deleterious(0) probably_damaging(0.944) TCGA-05-4427-01 18 43204687 43204687 C G SLC14A2 Missense_Mutation p.L20V 0.60 deleterious_low_confidence(0.03) benign(0.013) TCGA-05-4427-01 18 43438646 43438646 T A EPG5 Missense_Mutation p.S2371C 0.10 deleterious(0) probably_damaging(0.947) TCGA-05-4427-01 18 50432464 50432464 G A DCC Missense_Mutation p.D155N 0.47 tolerated(0.19) benign(0.259) TCGA-05-4427-01 18 5410567 5410567 C G EPB41L3 Missense_Mutation p.E707Q 0.28 deleterious(0) possibly_damaging(0.739) TCGA-05-4427-01 18 56274666 56274666 G T ALPK2 Missense_Mutation p.P39T 0.46 deleterious(0) probably_damaging(1) TCGA-05-4427-01 18 59483517 59483517 C A RNF152 Silent p.L60L 0.58 TCGA-05-4427-01 18 61570574 61570574 A T SERPINB2 3'UTR 0.51 TCGA-05-4427-01 18 61602339 61602339 G C SERPINB10 Missense_Mutation p.A353P 0.07 deleterious(0.01) probably_damaging(0.993) TCGA-05-4427-01 18 66365210 66365210 G A TMX3 Missense_Mutation p.R151C 0.12 deleterious(0.04) possibly_damaging(0.676) TCGA-05-4427-01 18 70205360 70205360 G T CBLN2 3'UTR 0.28 TCGA-05-4427-01 18 70532852 70532852 C A NETO1 Intron 0.55 TCGA-05-4427-01 18 9216825 9216825 G C ANKRD12 Missense_Mutation p.G241A 0.20 deleterious(0) probably_damaging(1) TCGA-05-4427-01 18 9936982 9936982 G T VAPA Splice_Site p.X113_splice 0.31 TCGA-05-4427-01 19 10132406 10132406 C A RDH8 Missense_Mutation p.T326K 0.44 tolerated_low_confidence(0.94) benign(0.007) TCGA-05-4427-01 19 1057026 1057026 G A ABCA7 Silent p.Q1569Q 0.11 TCGA-05-4427-01 19 11565622 11565622 G A ELAVL3 Silent p.L275L 0.38 TCGA-05-4427-01 19 13340978 13340978 G C CACNA1A Missense_Mutation p.L1816V 0.09 possibly_damaging(0.567) TCGA-05-4427-01 19 14269997 14269997 C - LPHN1 Frame_Shift_Del p.G690Afs*56 0.29 TCGA-05-4427-01 19 15579522 15579522 G T PGLYRP2 Silent p.S561S 0.20 TCGA-05-4427-01 19 15579523 15579523 G T PGLYRP2 Missense_Mutation p.S561Y 0.21 tolerated_low_confidence(0.32) benign(0.243) TCGA-05-4427-01 19 17068695 17068695 G - CPAMD8 Frame_Shift_Del p.E796Kfs*21 0.20 TCGA-05-4427-01 19 19261565 19261565 G C MEF2BNB-MEF2B 5'UTR 0.29 TCGA-05-4427-01 19 22940339 22940339 C A ZNF99 Missense_Mutation p.C791F 0.11 deleterious(0) probably_damaging(1) TCGA-05-4427-01 19 23845011 23845011 C A ZNF675 Missense_Mutation p.G44V 0.46 deleterious(0.01) probably_damaging(0.993) TCGA-05-4427-01 19 31039467 31039467 C A ZNF536 Silent p.R981R 0.17 TCGA-05-4427-01 19 31040234 31040234 G T ZNF536 Missense_Mutation p.Q1236H 0.25 tolerated_low_confidence(0.07) benign(0.213) TCGA-05-4427-01 19 31767546 31767546 G A TSHZ3 Silent p.A1051A 0.54 TCGA-05-4427-01 19 34291379 34291379 G T KCTD15 Missense_Mutation p.R7L 0.25 tolerated_low_confidence(0.16) benign(0.25) TCGA-05-4427-01 19 35832311 35832311 G T CD22 Missense_Mutation p.V525F 0.50 deleterious(0.03) possibly_damaging(0.68) TCGA-05-4427-01 19 36223688 36223688 G T KMT2B Missense_Mutation p.G2080C 0.53 probably_damaging(0.996) TCGA-05-4427-01 19 362382 362382 G A THEG Missense_Mutation p.R320C 0.21 deleterious(0.03) probably_damaging(0.949) TCGA-05-4427-01 19 36339975 36339975 G T NPHS1 Silent p.T305T 0.16 TCGA-05-4427-01 19 37680982 37680982 T A ZNF585B Missense_Mutation p.Q48L 0.25 deleterious(0) probably_damaging(0.994) TCGA-05-4427-01 19 37721334 37721334 A C ZNF383 5'UTR 0.05 TCGA-05-4427-01 19 3783219 3783219 T C MATK Splice_Site p.X196_splice 0.18 TCGA-05-4427-01 19 38934437 38934437 G C RYR1 Splice_Site p.X142_splice 0.13 TCGA-05-4427-01 19 41007852 41007852 A G SPTBN4 Missense_Mutation p.E270G 0.10 deleterious(0) possibly_damaging(0.517) TCGA-05-4427-01 19 42085939 42085939 G A CEACAM21 Missense_Mutation p.V220I 0.53 tolerated(0.1) possibly_damaging(0.854) TCGA-05-4427-01 19 43348634 43348634 G C PSG10P RNA 0.39 TCGA-05-4427-01 19 43528843 43528843 G T PSG11 Missense_Mutation p.L144M 0.52 tolerated(0.17) benign(0.072) TCGA-05-4427-01 19 43528992 43528992 G C PSG11 Missense_Mutation p.A94G 0.46 deleterious(0) probably_damaging(0.969) TCGA-05-4427-01 19 4529849 4529849 C A PLIN5 Missense_Mutation p.G96C 0.21 deleterious(0) probably_damaging(0.999) TCGA-05-4427-01 19 47824025 47824026 GA - C5AR1 Frame_Shift_Del p.S332Qfs*54 0.39 TCGA-05-4427-01 19 49652395 49652395 G C PPFIA3 Missense_Mutation p.L1085F 0.69 deleterious(0) probably_damaging(0.983) TCGA-05-4427-01 19 49692259 49692259 C T TRPM4 Missense_Mutation p.R644C 0.31 deleterious(0) probably_damaging(0.983) TCGA-05-4427-01 19 49838763 49838763 T G CD37 5'UTR 0.62 TCGA-05-4427-01 19 49858629 49858629 G A TEAD2 Silent p.S140S 0.71 TCGA-05-4427-01 19 50002824 50002824 A G RPS11 Missense_Mutation p.T137A 0.20 deleterious(0) possibly_damaging(0.807) TCGA-05-4427-01 19 50473421 50473421 C G SIGLEC16 RNA 0.29 TCGA-05-4427-01 19 50475328 50475328 C T VRK3 3'Flank 0.27 TCGA-05-4427-01 19 51647777 51647777 C G SIGLEC7 Missense_Mutation p.S183C 0.24 deleterious(0) probably_damaging(0.955) TCGA-05-4427-01 19 51918113 51918113 T A SIGLEC10 Missense_Mutation p.H527L 0.13 tolerated(0.08) possibly_damaging(0.582) TCGA-05-4427-01 19 53740167 53740167 A - ZNF677 3'UTR 0.20 TCGA-05-4427-01 19 53950458 53950458 C G ZNF761 RNA 0.05 TCGA-05-4427-01 19 55253716 55253716 G T KIR2DL3 Missense_Mutation p.V121F 0.55 deleterious(0.03) probably_damaging(0.993) TCGA-05-4427-01 19 55450622 55450622 A G NLRP7 Missense_Mutation p.L522S 0.15 tolerated(0.08) possibly_damaging(0.632) TCGA-05-4427-01 19 56424253 56424253 A G NLRP13 Silent p.I310I 0.68 TCGA-05-4427-01 19 57803158 57803158 G T ZNF460 Nonsense_Mutation p.E417* 0.56 TCGA-05-4427-01 19 57867973 57867973 G C ZNF304 Missense_Mutation p.A246P 0.61 tolerated(0.09) benign(0.002) TCGA-05-4427-01 19 58189945 58189945 G C ZSCAN4 Missense_Mutation p.C325S 0.68 tolerated(1) benign(0) TCGA-05-4427-01 19 58438039 58438039 G T ZNF418 Missense_Mutation p.H504N 0.49 deleterious(0) probably_damaging(0.941) TCGA-05-4427-01 19 58564975 58564975 C G ZSCAN1 Missense_Mutation p.H261Q 0.60 tolerated(0.33) benign(0.001) TCGA-05-4427-01 19 58565079 58565079 A T ZSCAN1 Missense_Mutation p.D296V 0.63 deleterious(0) benign(0.291) TCGA-05-4427-01 19 58868093 58868093 G A ZNF497 Silent p.P303P 0.75 TCGA-05-4427-01 19 9047205 9047205 G T MUC16 Missense_Mutation p.P11476T 0.17 benign(0) TCGA-05-4427-01 19 9068673 9068673 G T MUC16 Missense_Mutation p.T6258K 0.11 unknown(0) TCGA-05-4427-01 19 9089859 9089859 A G MUC16 Silent p.S652S 0.13 TCGA-05-4427-01 19 9325365 9325365 C T OR7D4 Missense_Mutation p.S50N 0.15 tolerated(0.08) possibly_damaging(0.467) TCGA-05-4427-01 19 9452555 9452555 G T ZNF559 Missense_Mutation p.G143V 0.40 tolerated(0.08) probably_damaging(0.988) TCGA-05-4427-01 1 100174799 100174799 A T FRRS1 Missense_Mutation p.M538K 0.20 tolerated(0.07) benign(0.005) TCGA-05-4427-01 1 102270165 102270165 G T OLFM3 Missense_Mutation p.L336M 0.24 deleterious(0.04) benign(0.076) TCGA-05-4427-01 1 102270432 102270432 G T OLFM3 Missense_Mutation p.R247S 0.08 tolerated(0.12) benign(0.313) TCGA-05-4427-01 1 103354296 103354296 C A COL11A1 Missense_Mutation p.G1513C 0.43 unknown(0) TCGA-05-4427-01 1 103379962 103379962 C T COL11A1 Splice_Site p.X1309_splice 0.12 TCGA-05-4427-01 1 103412446 103412446 G C COL11A1 Missense_Mutation p.P1079A 0.44 unknown(0) TCGA-05-4427-01 1 104113049 104113049 T C AMY2B Intron 0.09 TCGA-05-4427-01 1 107937777 107937777 T A NTNG1 Missense_Mutation p.C297S 0.41 tolerated(0.06) possibly_damaging(0.689) TCGA-05-4427-01 1 109801502 109801502 G T CELSR2 Silent p.A1253A 0.31 TCGA-05-4427-01 1 110294767 110294767 C T EPS8L3 Silent p.K429K 0.10 TCGA-05-4427-01 1 110300460 110300460 G A EPS8L3 Silent p.D287D 0.11 TCGA-05-4427-01 1 115487077 115487077 G A SYCP1 Splice_Site p.X681_splice 0.38 TCGA-05-4427-01 1 117948254 117948254 C T MAN1A2 Silent p.S214S 0.19 TCGA-05-4427-01 1 11889329 11889329 C T CLCN6 Nonsense_Mutation p.R400* 0.54 TCGA-05-4427-01 1 119441696 119441696 G T TBX15 Missense_Mutation p.R221S 0.15 tolerated(0.05) benign(0.009) TCGA-05-4427-01 1 144868162 144868162 A T PDE4DIP Silent p.T1759T 0.19 TCGA-05-4427-01 1 144879316 144879316 C A PDE4DIP Silent p.R1378R 0.22 TCGA-05-4427-01 1 151315112 151315112 C - RFX5 Frame_Shift_Del p.R468Afs*98 0.13 TCGA-05-4427-01 1 152059644 152059644 C T TCHHL1 Missense_Mutation p.A172T 0.20 tolerated(0.33) benign(0.064) TCGA-05-4427-01 1 152190660 152190660 C A HRNR Missense_Mutation p.G1149C 0.12 unknown(0) TCGA-05-4427-01 1 152192040 152192040 C A HRNR Missense_Mutation p.G689C 0.51 unknown(0) TCGA-05-4427-01 1 152659670 152659670 T C LCE2B 3'UTR 0.08 TCGA-05-4427-01 1 152857053 152857053 C A SMCP Missense_Mutation p.P52Q 0.06 tolerated(0.51) possibly_damaging(0.904) TCGA-05-4427-01 1 153066193 153066193 C G SPRR2E Missense_Mutation p.C12S 0.16 deleterious_low_confidence(0) unknown(0) TCGA-05-4427-01 1 154401785 154401785 G T IL6R Missense_Mutation p.A67S 0.18 tolerated(0.89) benign(0) TCGA-05-4427-01 1 154919131 154919131 C A PBXIP1 Missense_Mutation p.G340V 0.12 deleterious(0.03) possibly_damaging(0.804) TCGA-05-4427-01 1 154987854 154987854 G T ZBTB7B Missense_Mutation p.G274C 0.12 deleterious(0.01) probably_damaging(0.984) TCGA-05-4427-01 1 156814347 156814347 G A INSRR Missense_Mutation p.P882S 0.07 tolerated(0.93) benign(0.044) TCGA-05-4427-01 1 157014186 157014186 C A ARHGEF11 5'UTR 0.08 TCGA-05-4427-01 1 157068577 157068577 G T ETV3L Missense_Mutation p.A136E 0.57 deleterious(0.01) benign(0.21) TCGA-05-4427-01 1 157737207 157737207 C A FCRL2 Missense_Mutation p.G326C 0.34 deleterious(0) probably_damaging(1) TCGA-05-4427-01 1 158436129 158436129 T A OR10K1 Missense_Mutation p.L260I 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-05-4427-01 1 158450221 158450221 G T OR10R2 Missense_Mutation p.S185I 0.14 tolerated(0.13) benign(0.071) TCGA-05-4427-01 1 158576401 158576401 C A OR10Z1 Missense_Mutation p.P58H 0.11 deleterious(0) probably_damaging(0.998) TCGA-05-4427-01 1 158636228 158636228 G T SPTA1 Missense_Mutation p.Q700K 0.26 tolerated(0.45) benign(0.004) TCGA-05-4427-01 1 158686969 158686969 G T OR6K3 Missense_Mutation p.P313T 0.07 tolerated(0.58) benign(0.001) TCGA-05-4427-01 1 158735965 158735965 C A OR6N1 Missense_Mutation p.G170C 0.23 deleterious(0.01) probably_damaging(0.987) TCGA-05-4427-01 1 159176165 159176165 C T DARC Silent p.T314T 0.12 TCGA-05-4427-01 1 159505255 159505255 G T OR10J5 Nonsense_Mutation p.Y181* 0.19 TCGA-05-4427-01 1 160209920 160209920 T G DCAF8 Missense_Mutation p.D97A 0.36 tolerated(0.57) benign(0.001) TCGA-05-4427-01 1 160209950 160209950 T A DCAF8 Missense_Mutation p.Y87F 0.44 tolerated(0.57) benign(0.002) TCGA-05-4427-01 1 161094006 161094006 G A DEDD Missense_Mutation p.R83C 0.14 deleterious(0.02) probably_damaging(0.971) TCGA-05-4427-01 1 161183230 161183230 C T NDUFS2 Missense_Mutation p.P393S 0.22 tolerated(0.07) possibly_damaging(0.856) TCGA-05-4427-01 1 16356507 16356507 C A CLCNKA Missense_Mutation p.P449T 0.51 deleterious(0.02) possibly_damaging(0.512) TCGA-05-4427-01 1 165697284 165697284 T G TMCO1 Silent p.P232P 0.19 TCGA-05-4427-01 1 16577152 16577152 G A FBXO42 3'UTR 0.34 TCGA-05-4427-01 1 167095143 167095143 C A DUSP27 Silent p.R259R 0.20 TCGA-05-4427-01 1 17371269 17371269 C T SDHB Missense_Mutation p.V63I 0.10 tolerated(0.63) benign(0.029) TCGA-05-4427-01 1 175299314 175299314 A T TNR Missense_Mutation p.M1230K 0.12 deleterious(0) probably_damaging(0.999) TCGA-05-4427-01 1 175304848 175304848 C A TNR Silent p.L1210L 0.15 TCGA-05-4427-01 1 176668590 176668590 C A PAPPA2 Missense_Mutation p.A1034E 0.12 deleterious(0.02) possibly_damaging(0.854) TCGA-05-4427-01 1 177247898 177247898 T A BRINP2 Silent p.P404P 0.51 TCGA-05-4427-01 1 178863068 178863068 A T RALGPS2 Missense_Mutation p.E447V 0.16 tolerated(0.15) benign(0.003) TCGA-05-4427-01 1 179815899 179815900 GG A TOR1AIP2 Frame_Shift_Del p.S240Ffs*69 0.30 TCGA-05-4427-01 1 186277184 186277184 C T PRG4 Missense_Mutation p.P778L 0.11 unknown(0) TCGA-05-4427-01 1 186648545 186648545 A G PTGS2 Silent p.C26C 0.20 TCGA-05-4427-01 1 186862165 186862165 G T PLA2G4A Silent p.V46V 0.14 TCGA-05-4427-01 1 193205393 193205393 G T CDC73 Missense_Mutation p.V442F 0.15 deleterious(0) probably_damaging(1) TCGA-05-4427-01 1 19518771 19518771 C G UBR4 Missense_Mutation p.E435D 0.07 possibly_damaging(0.615) TCGA-05-4427-01 1 196250051 196250051 G - KCNT2 Frame_Shift_Del p.S950Lfs*28 0.36 TCGA-05-4427-01 1 197070690 197070690 T C ASPM Missense_Mutation p.Y2564C 0.12 deleterious(0.05) probably_damaging(1) TCGA-05-4427-01 1 200817577 200817577 G T CAMSAP2 Missense_Mutation p.Q560H 0.23 tolerated(0.12) benign(0.178) TCGA-05-4427-01 1 201196129 201196129 G T IGFN1 Missense_Mutation p.A3636S 0.16 probably_damaging(0.999) TCGA-05-4427-01 1 204006249 204006249 G T LINC00303 Intron 0.33 TCGA-05-4427-01 1 206650076 206650076 G T IKBKE Missense_Mutation p.G199V 0.45 deleterious(0) probably_damaging(1) TCGA-05-4427-01 1 207107960 207107960 G A PIGR Nonsense_Mutation p.Q504* 0.17 TCGA-05-4427-01 1 207758216 207758216 G A CR1 Missense_Mutation p.R1842H 0.16 tolerated(0.2) possibly_damaging(0.814) TCGA-05-4427-01 1 209965773 209965773 C A IRF6 Splice_Site p.X170_splice 0.46 TCGA-05-4427-01 1 216243506 216243506 T G USH2A Missense_Mutation p.S1996R 0.14 benign(0.005) TCGA-05-4427-01 1 216372967 216372967 A T USH2A Splice_Site p.X1271_splice 0.16 TCGA-05-4427-01 1 216595681 216595681 T C USH2A 5'UTR 0.13 TCGA-05-4427-01 1 219352503 219352503 G A LYPLAL1 Missense_Mutation p.G36R 0.19 deleterious(0.04) possibly_damaging(0.463) TCGA-05-4427-01 1 220236169 220236169 T C BPNT1 Missense_Mutation p.K201R 0.17 tolerated(0.3) benign(0.008) TCGA-05-4427-01 1 220935067 220935067 T A MARC2 Missense_Mutation p.L172M 0.16 deleterious(0) probably_damaging(1) TCGA-05-4427-01 1 227076648 227076648 C A PSEN2 Missense_Mutation p.Q229K 0.32 deleterious(0) probably_damaging(0.98) TCGA-05-4427-01 1 228288678 228288678 G A C1orf35 3'UTR 0.40 TCGA-05-4427-01 1 228645071 228645071 G T HIST3H2A 3'UTR 0.23 TCGA-05-4427-01 1 23191386 23191386 C A EPHB2 Silent p.P328P 0.56 TCGA-05-4427-01 1 233802492 233802492 C T KCNK1 Silent p.H169H 0.09 TCGA-05-4427-01 1 23520676 23520676 G A HTR1D Nonsense_Mutation p.Q13* 0.10 TCGA-05-4427-01 1 235840794 235840794 T A LYST Silent p.I3642I 0.36 TCGA-05-4427-01 1 235973040 235973040 C A LYST Missense_Mutation p.A360S 0.39 tolerated(0.07) possibly_damaging(0.825) TCGA-05-4427-01 1 237947745 237947745 C A RYR2 Missense_Mutation p.L4245M 0.12 possibly_damaging(0.85) TCGA-05-4427-01 1 237947932 237947932 G T RYR2 Missense_Mutation p.R4307L 0.38 benign(0.052) TCGA-05-4427-01 1 240070921 240070921 A C CHRM3 Missense_Mutation p.D57A 0.10 tolerated(0.62) benign(0.002) TCGA-05-4427-01 1 240256749 240256749 C A FMN2 Missense_Mutation p.P447Q 0.13 unknown(0) TCGA-05-4427-01 1 240555840 240555840 T G FMN2 Missense_Mutation p.S1630A 0.13 benign(0.246) TCGA-05-4427-01 1 244217638 244217638 G T ZBTB18 Nonsense_Mutation p.E188* 0.49 TCGA-05-4427-01 1 247835538 247835538 T G OR13G1 Missense_Mutation p.K269T 0.10 deleterious(0) probably_damaging(0.999) TCGA-05-4427-01 1 247835734 247835734 C A OR13G1 Missense_Mutation p.A204S 0.14 tolerated(0.12) probably_damaging(0.975) TCGA-05-4427-01 1 247921131 247921131 G C OR1C1 Missense_Mutation p.S193C 0.27 tolerated(0.18) probably_damaging(0.922) TCGA-05-4427-01 1 248113076 248113076 G T OR2L8 Missense_Mutation p.R306I 0.26 deleterious(0.05) benign(0.019) TCGA-05-4427-01 1 248224642 248224642 T G OR2L3 Missense_Mutation p.V220G 0.11 deleterious(0) probably_damaging(0.972) TCGA-05-4427-01 1 248366706 248366706 T A OR2M3 Missense_Mutation p.F113I 0.11 deleterious(0.02) probably_damaging(0.984) TCGA-05-4427-01 1 248367104 248367104 C A OR2M3 Silent p.L245L 0.41 TCGA-05-4427-01 1 248436797 248436797 C A OR2T33 Missense_Mutation p.G107V 0.15 deleterious(0.03) probably_damaging(1) TCGA-05-4427-01 1 248685897 248685897 A G OR2G6 Nonstop_Mutation p.*317Wext*? 0.24 TCGA-05-4427-01 1 248737322 248737322 C A OR2T34 Missense_Mutation p.C246F 0.26 deleterious(0) probably_damaging(0.999) TCGA-05-4427-01 1 249152402 249152402 T C ZNF692 Missense_Mutation p.E41G 0.37 deleterious(0) possibly_damaging(0.881) TCGA-05-4427-01 1 25256084 25256084 G T RUNX3 Silent p.A106A 0.57 TCGA-05-4427-01 1 26516098 26516122 CTGACGTGTCCAGGACAGAGCATCC - CNKSR1 3'UTR 0.47 TCGA-05-4427-01 1 27056169 27056169 A C ARID1A Missense_Mutation p.K389Q 0.06 possibly_damaging(0.885) TCGA-05-4427-01 1 27877829 27877829 T C AHDC1 Silent p.P266P 0.14 TCGA-05-4427-01 1 3669111 3669111 G T CCDC27 Silent p.P22P 0.62 TCGA-05-4427-01 1 3679923 3679923 C A CCDC27 Silent p.S402S 0.60 TCGA-05-4427-01 1 38079564 38079564 G T RSPO1 Missense_Mutation p.A146E 0.14 tolerated(0.29) benign(0.018) TCGA-05-4427-01 1 41249968 41249968 C A KCNQ4 Missense_Mutation p.A68D 0.33 tolerated(0.14) benign(0.247) TCGA-05-4427-01 1 42923009 42923009 G A PPCS Silent p.G200G 0.06 TCGA-05-4427-01 1 43828709 43828709 G A CDC20 Nonsense_Mutation p.W470* 0.10 TCGA-05-4427-01 1 44437304 44437304 G T DPH2 Missense_Mutation p.G244C 0.08 tolerated(0.5) benign(0.021) TCGA-05-4427-01 1 45474044 45474044 C - HECTD3 Intron 0.09 TCGA-05-4427-01 1 45981335 45981335 T G PRDX1 Missense_Mutation p.H84P 0.15 deleterious(0) probably_damaging(0.941) TCGA-05-4427-01 1 47685464 47685464 G T TAL1 Silent p.P308P 0.11 TCGA-05-4427-01 1 50610800 50610800 G T ELAVL4 Nonsense_Mutation p.E78* 0.13 TCGA-05-4427-01 1 57481056 57481056 G T DAB1 Missense_Mutation p.P315H 0.26 deleterious(0) possibly_damaging(0.823) TCGA-05-4427-01 1 58971854 58971854 C A OMA1 Missense_Mutation p.V415L 0.21 deleterious(0.02) possibly_damaging(0.884) TCGA-05-4427-01 1 62739519 62739519 G T KANK4 Silent p.V419V 0.20 TCGA-05-4427-01 1 65691779 65691779 G C AK4 Silent p.T197T 0.14 TCGA-05-4427-01 1 65831778 65831778 G A DNAJC6 Missense_Mutation p.V148I 0.34 tolerated(1) benign(0.001) TCGA-05-4427-01 1 65897500 65897500 C T LEPROT Silent p.A98A 0.08 TCGA-05-4427-01 1 70339276 70339276 G T LRRC7 Intron 0.25 TCGA-05-4427-01 1 70504590 70504590 G T LRRC7 Missense_Mutation p.G990V 0.19 deleterious(0.02) probably_damaging(0.953) TCGA-05-4427-01 1 72400927 72400927 C A NEGR1 Missense_Mutation p.G82C 0.21 deleterious(0) possibly_damaging(0.72) TCGA-05-4427-01 1 74492516 74492516 G T LRRIQ3 Missense_Mutation p.P619H 0.13 deleterious(0) possibly_damaging(0.819) TCGA-05-4427-01 1 74575175 74575175 C A LRRIQ3 Missense_Mutation p.W257L 0.12 tolerated(0.13) benign(0.086) TCGA-05-4427-01 1 74957781 74957781 C G TNNI3K Missense_Mutation p.L829V 0.18 tolerated_low_confidence(0.13) benign(0.046) TCGA-05-4427-01 1 75037552 75037552 A G C1orf173 Missense_Mutation p.M1281T 0.24 tolerated(0.3) benign(0.001) TCGA-05-4427-01 1 75038387 75038387 C T C1orf173 Missense_Mutation p.A1003T 0.10 tolerated(0.08) possibly_damaging(0.453) TCGA-05-4427-01 1 75596247 75596247 G T LHX8 5'UTR 0.22 TCGA-05-4427-01 1 76398059 76398059 A T ASB17 5'UTR 0.18 TCGA-05-4427-01 1 77510143 77510143 C A ST6GALNAC5 Silent p.G172G 0.16 TCGA-05-4427-01 1 79107285 79107285 G C IFI44L Missense_Mutation p.E439Q 0.10 deleterious(0.05) probably_damaging(0.935) TCGA-05-4427-01 1 79403913 79403913 A T ELTD1 Missense_Mutation p.S150T 0.09 tolerated(1) benign(0.058) TCGA-05-4427-01 1 82447620 82447620 G C LPHN2 Missense_Mutation p.G1064A 0.07 tolerated(0.1) probably_damaging(1) TCGA-05-4427-01 1 84399389 84399389 A G TTLL7 Missense_Mutation p.C317R 0.30 deleterious(0) probably_damaging(0.989) TCGA-05-4427-01 1 86250028 86250028 G A COL24A1 Nonsense_Mutation p.Q1361* 0.45 TCGA-05-4427-01 1 89523879 89523879 G T GBP1 Missense_Mutation p.L224I 0.25 tolerated(0.17) benign(0.154) TCGA-05-4427-01 1 89889968 89889968 G T GBP1P1 RNA 0.22 TCGA-05-4427-01 1 93672778 93672778 G A CCDC18 Silent p.E398E 0.09 TCGA-05-4427-01 1 95448590 95448590 T C ALG14 3'UTR 0.18 TCGA-05-4427-01 1 981164 981164 C T AGRN Missense_Mutation p.T863M 0.12 deleterious(0) probably_damaging(0.938) TCGA-05-4427-01 20 1552524 1552524 T C SIRPB1 Missense_Mutation p.D198G 0.25 tolerated(0.22) benign(0.113) TCGA-05-4427-01 20 16359504 16359504 C A KIF16B Missense_Mutation p.G1048V 0.08 deleterious_low_confidence(0) possibly_damaging(0.771) TCGA-05-4427-01 20 2843727 2843727 A T VPS16 Missense_Mutation p.I450F 0.15 tolerated(0.27) benign(0.205) TCGA-05-4427-01 20 2847154 2847154 G T VPS16 Silent p.T818T 0.12 TCGA-05-4427-01 20 30436654 30436654 G T FOXS1 5'Flank 0.32 TCGA-05-4427-01 20 30919105 30919105 G T KIF3B Missense_Mutation p.G743W 0.15 deleterious(0) probably_damaging(0.965) TCGA-05-4427-01 20 33440304 33440304 C A GGT7 Missense_Mutation p.D453Y 0.50 tolerated(0.11) possibly_damaging(0.677) TCGA-05-4427-01 20 34220814 34220814 G C CPNE1 Missense_Mutation p.S16C 0.08 deleterious(0.04) probably_damaging(0.992) TCGA-05-4427-01 20 3651959 3651959 G C ADAM33 Missense_Mutation p.P673A 0.34 tolerated(1) benign(0.012) TCGA-05-4427-01 20 3655281 3655281 C T ADAM33 Missense_Mutation p.G157D 0.26 tolerated(1) benign(0.001) TCGA-05-4427-01 20 36851985 36851985 A T KIAA1755 Silent p.A741A 0.15 TCGA-05-4427-01 20 36854101 36854101 G T KIAA1755 Missense_Mutation p.P712H 0.41 deleterious(0) probably_damaging(0.997) TCGA-05-4427-01 20 3735083 3735083 C A C20orf27 Missense_Mutation p.G154C 0.22 deleterious(0.02) possibly_damaging(0.605) TCGA-05-4427-01 20 42343885 42343885 G T MYBL2 Missense_Mutation p.A646S 0.08 tolerated(0.43) benign(0.004) TCGA-05-4427-01 20 42695416 42695416 C A TOX2 Nonsense_Mutation p.S468* 0.30 TCGA-05-4427-01 20 42969841 42969841 G T R3HDML Missense_Mutation p.W89C 0.33 deleterious(0) probably_damaging(1) TCGA-05-4427-01 20 44673755 44673755 G T SLC12A5 Missense_Mutation p.R538S 0.19 tolerated(0.18) possibly_damaging(0.491) TCGA-05-4427-01 20 44828105 44828105 C T CDH22 Silent p.E460E 0.15 TCGA-05-4427-01 20 45129994 45129994 C G ZNF334 Missense_Mutation p.E662Q 0.14 tolerated(0.1) benign(0.108) TCGA-05-4427-01 20 45358063 45358063 T A SLC2A10 Missense_Mutation p.L495I 0.24 tolerated(0.09) benign(0.009) TCGA-05-4427-01 20 46365538 46365538 G T SULF2 Silent p.T108T 0.12 TCGA-05-4427-01 20 49562404 49562404 C T DPM1 Missense_Mutation p.D118N 0.10 deleterious(0) probably_damaging(0.998) TCGA-05-4427-01 20 62729228 62729228 A T OPRL1 Missense_Mutation p.T103S 0.15 tolerated(0.4) probably_damaging(0.998) TCGA-05-4427-01 20 9404403 9404403 G T PLCB4 Silent p.L764L 0.20 TCGA-05-4427-01 20 9440414 9440414 G T PLCB4 Missense_Mutation p.A1057S 0.22 tolerated(0.25) benign(0.068) TCGA-05-4427-01 20 9546566 9546566 G T PAK7 Missense_Mutation p.Q486K 0.30 deleterious(0) probably_damaging(0.965) TCGA-05-4427-01 21 10959797 10959797 C G TPTE Silent p.V59V 0.22 TCGA-05-4427-01 21 15753637 15753637 C A HSPA13 Missense_Mutation p.V85L 0.64 tolerated(0.43) benign(0.001) TCGA-05-4427-01 21 30699390 30699390 G T BACH1 Missense_Mutation p.Q415H 0.37 tolerated(0.4) possibly_damaging(0.62) TCGA-05-4427-01 21 31538561 31538561 G A CLDN17 Silent p.L125L 0.28 TCGA-05-4427-01 21 31743941 31743941 G T KRTAP13-2 3'UTR 0.58 TCGA-05-4427-01 21 31797728 31797728 C A KRTAP13-3 Missense_Mutation p.R168I 0.38 tolerated(0.06) benign(0.125) TCGA-05-4427-01 21 31964926 31964926 G T KRTAP6-3 Silent p.L47L 0.71 TCGA-05-4427-01 21 32127674 32127674 T C KRTAP21-1 Missense_Mutation p.N8S 0.12 deleterious_low_confidence(0) unknown(0) TCGA-05-4427-01 21 32525394 32525394 G T TIAM1 Missense_Mutation p.T1077N 0.53 deleterious(0) benign(0.219) TCGA-05-4427-01 21 34923100 34923100 G T SON Silent p.T521T 0.29 TCGA-05-4427-01 21 35229040 35229040 G T ITSN1 Missense_Mutation p.W1221L 0.30 deleterious(0.04) benign(0.1) TCGA-05-4427-01 21 42774003 42774003 G T MX2 Missense_Mutation p.Q507H 0.61 deleterious(0.04) benign(0.066) TCGA-05-4427-01 21 43523974 43523974 C A C21orf128 Missense_Mutation p.A87S 0.11 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-05-4427-01 21 44108030 44108030 C T PDE9A Silent p.N48N 0.12 TCGA-05-4427-01 21 44949598 44949598 C A HSF2BP 3'UTR 0.19 TCGA-05-4427-01 21 45802661 45802661 C G TRPM2 Missense_Mutation p.Q426E 0.10 deleterious(0.03) possibly_damaging(0.648) TCGA-05-4427-01 21 45837909 45837909 C A TRPM2 Silent p.P1082P 0.21 TCGA-05-4427-01 22 17072830 17072830 C A CCT8L2 Missense_Mutation p.G204V 0.19 tolerated(0.26) benign(0.261) TCGA-05-4427-01 22 17264941 17264941 G C XKR3 Silent p.A316A 0.61 TCGA-05-4427-01 22 18844930 18844930 G T BCRP7 RNA 0.21 TCGA-05-4427-01 22 20127060 20127060 G T ZDHHC8 Missense_Mutation p.V96L 0.16 deleterious(0.03) probably_damaging(0.994) TCGA-05-4427-01 22 22318677 22318677 C A TOP3B Silent p.P318P 0.44 TCGA-05-4427-01 22 24724886 24724886 G T SPECC1L Missense_Mutation p.R740L 0.52 deleterious(0) probably_damaging(0.998) TCGA-05-4427-01 22 26164762 26164762 G T MYO18B Silent p.V293V 0.70 TCGA-05-4427-01 22 29537988 29537988 C T KREMEN1 Missense_Mutation p.S439L 0.09 deleterious_low_confidence(0.01) benign(0.294) TCGA-05-4427-01 22 39358627 39358627 A T APOBEC3A 3'UTR 0.47 TCGA-05-4427-01 22 39414514 39414515 - A APOBEC3C 3'UTR 0.35 TCGA-05-4427-01 22 39817889 39817889 G T TAB1 Silent p.L278L 0.43 TCGA-05-4427-01 22 50904684 50904684 G T SBF1 Missense_Mutation p.F264L 0.53 tolerated(0.09) possibly_damaging(0.672) TCGA-05-4427-01 2 100628032 100628032 C A AFF3 Missense_Mutation p.G19C 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-05-4427-01 2 102968097 102968097 G T IL1RL1 Nonsense_Mutation p.E463* 0.24 TCGA-05-4427-01 2 105883796 105883796 C A TGFBRAP1 3'UTR 0.35 TCGA-05-4427-01 2 106710472 106710472 A C UXS1 3'UTR 0.16 TCGA-05-4427-01 2 108476182 108476182 G A RGPD4 Missense_Mutation p.G547R 0.05 deleterious(0) probably_damaging(0.979) TCGA-05-4427-01 2 116101469 116101469 A G DPP10 Silent p.P88P 0.25 TCGA-05-4427-01 2 11696629 11696629 G T GREB1 5'UTR 0.55 TCGA-05-4427-01 2 121708923 121708923 C A GLI2 Missense_Mutation p.P120Q 0.15 deleterious(0.01) possibly_damaging(0.829) TCGA-05-4427-01 2 125671721 125671721 C A CNTNAP5 Silent p.T1259T 0.10 TCGA-05-4427-01 2 127821174 127821174 C T BIN1 Silent p.E249E 0.33 TCGA-05-4427-01 2 130832437 130832437 C T POTEF Missense_Mutation p.A870T 0.14 deleterious_low_confidence(0.04) probably_damaging(0.942) TCGA-05-4427-01 2 130929999 130929999 C A SMPD4 Missense_Mutation p.W233C 0.07 tolerated(0.07) probably_damaging(0.95) TCGA-05-4427-01 2 131688652 131688652 G C ARHGEF4 Missense_Mutation p.C41S 0.23 tolerated_low_confidence(0.83) benign(0) TCGA-05-4427-01 2 132508254 132508254 C T C2orf27A 5'UTR 0.15 TCGA-05-4427-01 2 135743912 135743912 G A MAP3K19 Missense_Mutation p.H844Y 0.44 tolerated(0.19) benign(0.022) TCGA-05-4427-01 2 136626369 136626369 G A MCM6 Missense_Mutation p.R143W 0.20 deleterious(0) probably_damaging(0.997) TCGA-05-4427-01 2 138414507 138414507 C A THSD7B Missense_Mutation p.P1419H 0.30 deleterious(0) unknown(0) TCGA-05-4427-01 2 141027843 141027843 C G LRP1B Missense_Mutation p.Q4405H 0.17 benign(0.216) TCGA-05-4427-01 2 141122277 141122277 C A LRP1B Missense_Mutation p.G3695V 0.11 probably_damaging(0.988) TCGA-05-4427-01 2 141130580 141130580 G T LRP1B Missense_Mutation p.P3589T 0.08 possibly_damaging(0.641) TCGA-05-4427-01 2 143799613 143799613 C A KYNU Intron 0.18 TCGA-05-4427-01 2 144966223 144966223 G T GTDC1 Silent p.A42A 0.08 TCGA-05-4427-01 2 144966234 144966234 G C GTDC1 Missense_Mutation p.H39D 0.10 deleterious(0) probably_damaging(0.999) TCGA-05-4427-01 2 1488564 1488564 C A TPO Missense_Mutation p.P512H 0.13 deleterious(0) probably_damaging(0.967) TCGA-05-4427-01 2 151326542 151326542 C A RND3 Missense_Mutation p.D232Y 0.24 deleterious(0.03) benign(0.126) TCGA-05-4427-01 2 151326543 151326543 C A RND3 Silent p.T231T 0.25 TCGA-05-4427-01 2 15557783 15557783 A C NBAS Silent p.G877G 0.32 TCGA-05-4427-01 2 157369881 157369881 G C GPD2 Missense_Mutation p.K178N 0.30 deleterious(0) probably_damaging(1) TCGA-05-4427-01 2 160623873 160623873 A T MARCH7 3'UTR 0.24 TCGA-05-4427-01 2 166026944 166026944 G A SCN3A Missense_Mutation p.H127Y 0.27 deleterious(0.02) benign(0.045) TCGA-05-4427-01 2 166771854 166771854 T C TTC21B Silent p.L665L 0.15 TCGA-05-4427-01 2 168067243 168067243 A T XIRP2 Splice_Site p.X188_splice 0.38 TCGA-05-4427-01 2 168101659 168101659 G T XIRP2 Nonsense_Mutation p.E1253* 0.23 TCGA-05-4427-01 2 168101938 168101938 G T XIRP2 Missense_Mutation p.D1346Y 0.36 probably_damaging(0.999) TCGA-05-4427-01 2 168102125 168102125 C A XIRP2 Missense_Mutation p.P1408H 0.44 benign(0.063) TCGA-05-4427-01 2 168102604 168102604 C A XIRP2 Missense_Mutation p.P1568T 0.34 probably_damaging(0.972) TCGA-05-4427-01 2 170090060 170090060 G A LRP2 Silent p.D1653D 0.35 TCGA-05-4427-01 2 170101325 170101325 G T LRP2 Missense_Mutation p.T1103N 0.17 possibly_damaging(0.796) TCGA-05-4427-01 2 179414788 179414788 G T TTN Missense_Mutation p.H30593N 0.21 TCGA-05-4427-01 2 179554016 179554016 C A TTN Splice_Site p.X10671_splice 0.19 TCGA-05-4427-01 2 179580223 179580223 T G TTN Missense_Mutation p.K8640Q 0.15 TCGA-05-4427-01 2 179597060 179597060 C - TTN Frame_Shift_Del p.V5546Lfs*4 0.14 TCGA-05-4427-01 2 179605493 179605493 T A TTN Missense_Mutation p.Q4156L 0.10 TCGA-05-4427-01 2 183707257 183707257 T A FRZB Nonsense_Mutation p.K181* 0.41 TCGA-05-4427-01 2 185802585 185802585 C A ZNF804A Missense_Mutation p.P821H 0.24 tolerated(0.19) benign(0.135) TCGA-05-4427-01 2 187533638 187533638 G A ITGAV Silent p.L861L 0.20 TCGA-05-4427-01 2 187693111 187693111 G T ZSWIM2 Missense_Mutation p.P501H 0.09 deleterious(0.05) benign(0.006) TCGA-05-4427-01 2 187703818 187703818 G T ZSWIM2 Missense_Mutation p.P121Q 0.32 tolerated(0.45) benign(0.003) TCGA-05-4427-01 2 189874906 189874906 G A COL3A1 Missense_Mutation p.E1276K 0.10 unknown(0) TCGA-05-4427-01 2 191224995 191224995 T A INPP1 Missense_Mutation p.L56Q 0.08 deleterious(0) probably_damaging(1) TCGA-05-4427-01 2 192701131 192701131 C T SDPR Missense_Mutation p.E266K 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-05-4427-01 2 197187323 197187323 G A HECW2 Missense_Mutation p.L255F 0.25 tolerated(0.06) possibly_damaging(0.824) TCGA-05-4427-01 2 206023603 206023603 C A PARD3B Intron 0.07 TCGA-05-4427-01 2 207170027 207170027 A G ZDBF2 Missense_Mutation p.R259G 0.08 tolerated(0.09) benign(0.152) TCGA-05-4427-01 2 207509200 207509200 G T AC010731.4 RNA 0.28 TCGA-05-4427-01 2 21225048 21225048 C G APOB Missense_Mutation p.V4416L 0.18 benign(0.001) TCGA-05-4427-01 2 212589838 212589838 G A ERBB4 Missense_Mutation p.A235V 0.32 deleterious(0) probably_damaging(0.969) TCGA-05-4427-01 2 212812268 212812268 C A ERBB4 Missense_Mutation p.R103L 0.20 deleterious(0.02) probably_damaging(0.998) TCGA-05-4427-01 2 216284006 216284006 C A FN1 Missense_Mutation p.G593V 0.24 deleterious(0) probably_damaging(1) TCGA-05-4427-01 2 216284007 216284007 C A FN1 Missense_Mutation p.G593C 0.25 deleterious(0) probably_damaging(1) TCGA-05-4427-01 2 219292998 219292998 G A VIL1 Missense_Mutation p.D169N 0.14 deleterious(0) probably_damaging(0.997) TCGA-05-4427-01 2 220166876 220166876 G C PTPRN Missense_Mutation p.S326C 0.38 deleterious(0.01) possibly_damaging(0.469) TCGA-05-4427-01 2 222428959 222428960 - A EPHA4 Frame_Shift_Ins p.L105Ffs*6 0.26 TCGA-05-4427-01 2 223559869 223559869 C A MOGAT1 Missense_Mutation p.P239T 0.39 deleterious(0.04) possibly_damaging(0.589) TCGA-05-4427-01 2 223917758 223917758 G T KCNE4 Silent p.L70L 0.09 TCGA-05-4427-01 2 234526371 234526371 G T UGT1A8 Missense_Mutation p.W6C 0.28 tolerated(0.19) benign(0.001) TCGA-05-4427-01 2 234855735 234855735 C A TRPM8 Missense_Mutation p.S293Y 0.20 deleterious(0) possibly_damaging(0.907) TCGA-05-4427-01 2 234975910 234975910 G A SPP2 Missense_Mutation p.R181Q 0.34 tolerated(0.07) benign(0.06) TCGA-05-4427-01 2 239974810 239974810 C A HDAC4 Nonsense_Mutation p.E1080* 0.38 TCGA-05-4427-01 2 240946746 240946746 T C NDUFA10 Missense_Mutation p.Q264R 0.09 tolerated(0.35) benign(0.014) TCGA-05-4427-01 2 240961674 240961674 C A NDUFA10 Silent p.L53L 0.35 TCGA-05-4427-01 2 241656803 241656803 C A KIF1A Missense_Mutation p.R1785M 0.36 deleterious_low_confidence(0.01) probably_damaging(0.94) TCGA-05-4427-01 2 241814543 241814543 G T AGXT Missense_Mutation p.R233L 0.32 deleterious(0) probably_damaging(0.997) TCGA-05-4427-01 2 25383997 25383997 G C POMC Missense_Mutation p.L253V 0.30 deleterious(0) probably_damaging(0.999) TCGA-05-4427-01 2 26687776 26687776 G T OTOF Missense_Mutation p.R1641S 0.16 deleterious(0) benign(0.396) TCGA-05-4427-01 2 26702453 26702453 C A OTOF Missense_Mutation p.D661Y 0.17 deleterious(0) possibly_damaging(0.75) TCGA-05-4427-01 2 27001208 27001208 C A SLC35F6 Missense_Mutation p.F315L 0.13 deleterious(0.02) probably_damaging(0.993) TCGA-05-4427-01 2 27360750 27360750 C A C2orf53 Nonsense_Mutation p.E150* 0.42 TCGA-05-4427-01 2 28772895 28772895 A T PLB1 Missense_Mutation p.S343C 0.20 deleterious(0) benign(0.007) TCGA-05-4427-01 2 30143133 30143133 G A ALK Silent p.S131S 0.28 TCGA-05-4427-01 2 32715149 32715149 A T BIRC6 Missense_Mutation p.N2713Y 0.27 possibly_damaging(0.506) TCGA-05-4427-01 2 32983498 32983498 G A TTC27 Missense_Mutation p.R531H 0.17 deleterious(0) probably_damaging(0.993) TCGA-05-4427-01 2 33487838 33487838 C A LTBP1 Missense_Mutation p.P823H 0.19 deleterious(0) probably_damaging(0.95) TCGA-05-4427-01 2 3593432 3593432 T C RNASEH1 Missense_Mutation p.I268M 0.20 tolerated(0.27) benign(0.009) TCGA-05-4427-01 2 36737268 36737268 T A CRIM1 Nonsense_Mutation p.C548* 0.15 TCGA-05-4427-01 2 38570580 38570580 G A ATL2 Missense_Mutation p.L65F 0.11 deleterious(0.02) benign(0.243) TCGA-05-4427-01 2 39216412 39216412 T A SOS1 Silent p.P1130P 0.14 TCGA-05-4427-01 2 39499673 39499673 C A MAP4K3 Missense_Mutation p.R602L 0.35 deleterious(0.01) probably_damaging(0.932) TCGA-05-4427-01 2 42472648 42472648 A G EML4 Missense_Mutation p.D10G 0.52 deleterious(0) probably_damaging(0.999) TCGA-05-4427-01 2 44502681 44502681 G C SLC3A1 Missense_Mutation p.E3Q 0.22 deleterious_low_confidence(0.02) benign(0.393) TCGA-05-4427-01 2 47378505 47378506 - A C2orf61 Frame_Shift_Ins p.Q98Afs*6 0.17 TCGA-05-4427-01 2 47702164 47702164 G A MSH2 Missense_Mutation p.G587D 0.11 deleterious(0) probably_damaging(1) TCGA-05-4427-01 2 54125136 54125136 C A PSME4 Silent p.L1159L 0.39 TCGA-05-4427-01 2 63182783 63182783 G T EHBP1 Missense_Mutation p.R851S 0.28 tolerated_low_confidence(0.14) benign(0) TCGA-05-4427-01 2 69093488 69093488 G T BMP10 Missense_Mutation p.L184M 0.30 tolerated(0.26) benign(0.141) TCGA-05-4427-01 2 71058202 71058202 G C CD207 Silent p.P322P 0.26 TCGA-05-4427-01 2 71351404 71351404 G T MCEE Missense_Mutation p.R104S 0.21 tolerated(0.37) benign(0) TCGA-05-4427-01 2 7137104 7137104 C T RNF144A Missense_Mutation p.P16L 0.32 deleterious(0.03) possibly_damaging(0.791) TCGA-05-4427-01 2 71788954 71788954 C A DYSF Silent p.T763T 0.33 TCGA-05-4427-01 2 73249655 73249655 C T SFXN5 Missense_Mutation p.M109I 0.29 deleterious(0.01) probably_damaging(0.934) TCGA-05-4427-01 2 79313967 79313967 C A REG1B Nonsense_Mutation p.E52* 0.33 TCGA-05-4427-01 2 80136922 80136922 A T CTNNA2 Missense_Mutation p.N352I 0.40 deleterious(0) benign(0.438) TCGA-05-4427-01 2 86705065 86705096 ATCTTCAACCTGCACTGGGTGTGTCCTCGGTG - KDM3A Frame_Shift_Del p.I669Wfs*37 0.29 TCGA-05-4427-01 2 89160436 89160436 C A IGKC 5'Flank 0.18 TCGA-05-4427-01 2 95601068 95601068 G T AC097374.2 RNA 0.11 TCGA-05-4427-01 2 98377313 98377313 C A TMEM131 Missense_Mutation p.G1652C 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-05-4427-01 2 99999328 99999328 G A EIF5B Missense_Mutation p.E739K 0.17 probably_damaging(1) TCGA-05-4427-01 3 100013984 100013987 GGAT - TBC1D23 Frame_Shift_Del p.G220Ifs*13 0.09 TCGA-05-4427-01 3 100566448 100566448 G T ABI3BP Missense_Mutation p.P507Q 0.14 tolerated(0.41) benign(0.004) TCGA-05-4427-01 3 111799777 111799777 C A TMPRSS7 Missense_Mutation p.P667H 0.34 deleterious(0) probably_damaging(0.998) TCGA-05-4427-01 3 112992038 112992038 C - BOC Frame_Shift_Del p.L363Sfs*41 0.13 TCGA-05-4427-01 3 113850212 113850212 C G DRD3 Missense_Mutation p.K253N 0.12 tolerated(0.47) benign(0.088) TCGA-05-4427-01 3 118865705 118865705 T C C3orf30 Silent p.S223S 0.21 TCGA-05-4427-01 3 118865774 118865774 G A C3orf30 Silent p.S246S 0.16 TCGA-05-4427-01 3 121976017 121976017 C T CASR Missense_Mutation p.T92M 0.18 deleterious(0) probably_damaging(0.991) TCGA-05-4427-01 3 122849376 122849376 G T PDIA5 Missense_Mutation p.G275C 0.11 deleterious(0.04) probably_damaging(0.927) TCGA-05-4427-01 3 125648220 125648220 G T ALG1L Nonsense_Mutation p.S180* 0.20 TCGA-05-4427-01 3 12645699 12645699 G C RAF1 Missense_Mutation p.S257W 0.33 deleterious(0) probably_damaging(0.995) TCGA-05-4427-01 3 127318305 127318305 G C MCM2 Missense_Mutation p.D51H 0.33 deleterious(0) probably_damaging(0.996) TCGA-05-4427-01 3 128875701 128875701 T G ISY1 Silent p.R47R 0.28 TCGA-05-4427-01 3 129275046 129275046 C A PLXND1 3'UTR 0.50 TCGA-05-4427-01 3 129810213 129810213 C A RP11-93K22.13 Intron 0.29 TCGA-05-4427-01 3 130287008 130287008 T G COL6A6 Missense_Mutation p.I654S 0.07 deleterious(0) probably_damaging(0.984) TCGA-05-4427-01 3 130293335 130293335 C G COL6A6 Missense_Mutation p.I1171M 0.32 tolerated(0.75) possibly_damaging(0.878) TCGA-05-4427-01 3 134967314 134967314 C G EPHB1 Missense_Mutation p.P885A 0.09 tolerated(0.09) benign(0.006) TCGA-05-4427-01 3 13669343 13669343 T A FBLN2 Missense_Mutation p.C815S 0.12 deleterious(0) possibly_damaging(0.46) TCGA-05-4427-01 3 136699173 136699173 G T IL20RB Intron 0.13 TCGA-05-4427-01 3 136699284 136699284 C - IL20RB Intron 0.09 TCGA-05-4427-01 3 14489310 14489310 C T SLC6A6 Silent p.V195V 0.08 TCGA-05-4427-01 3 146177842 146177842 C T PLSCR2 Silent p.K23K 0.31 TCGA-05-4427-01 3 148766766 148766766 T A HLTF Missense_Mutation p.H547L 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-05-4427-01 3 14939048 14939048 T A FGD5 Missense_Mutation p.D927E 0.36 tolerated(0.58) benign(0.002) TCGA-05-4427-01 3 150916837 150916837 A T GPR171 Missense_Mutation p.C113S 0.33 tolerated(0.22) benign(0.02) TCGA-05-4427-01 3 151078344 151078344 C A MED12L Missense_Mutation p.L935I 0.39 deleterious(0.03) possibly_damaging(0.695) TCGA-05-4427-01 3 154139069 154139069 G A GPR149 Missense_Mutation p.S461F 0.25 tolerated(0.11) possibly_damaging(0.653) TCGA-05-4427-01 3 15643552 15643552 T A BTD Intron 0.50 TCGA-05-4427-01 3 158983083 158983083 G T IQCJ Missense_Mutation p.G124V 0.39 tolerated_low_confidence(0.09) benign(0.26) TCGA-05-4427-01 3 161214687 161214687 T G OTOL1 Missense_Mutation p.F31C 0.13 deleterious(0.01) unknown(0) TCGA-05-4427-01 3 161221532 161221532 G T OTOL1 Missense_Mutation p.Q412H 0.14 tolerated(0.12) benign(0.285) TCGA-05-4427-01 3 164760918 164760918 G A SI Missense_Mutation p.L645F 0.13 deleterious(0) probably_damaging(1) TCGA-05-4427-01 3 164785251 164785251 T C SI Missense_Mutation p.E171G 0.12 deleterious(0) possibly_damaging(0.905) TCGA-05-4427-01 3 164907748 164907748 C G SLITRK3 Missense_Mutation p.A291P 0.24 tolerated(0.18) benign(0.276) TCGA-05-4427-01 3 164908349 164908349 C G SLITRK3 Missense_Mutation p.R90S 0.12 tolerated(0.35) probably_damaging(0.996) TCGA-05-4427-01 3 170198912 170198912 C A SLC7A14 Missense_Mutation p.A387S 0.35 deleterious(0) probably_damaging(1) TCGA-05-4427-01 3 170727834 170727834 C A SLC2A2 Missense_Mutation p.V137F 0.32 deleterious(0.04) possibly_damaging(0.493) TCGA-05-4427-01 3 182597421 182597421 C G ATP11B Missense_Mutation p.P797R 0.11 deleterious(0) probably_damaging(1) TCGA-05-4427-01 3 182987453 182987453 A T B3GNT5 5'UTR 0.23 TCGA-05-4427-01 3 186256439 186256439 C A CRYGS 3'UTR 0.33 TCGA-05-4427-01 3 186282067 186282067 C T TBCCD1 Missense_Mutation p.G18S 0.20 deleterious(0) probably_damaging(0.991) TCGA-05-4427-01 3 186937956 186937956 C A MASP1 Missense_Mutation p.W668L 0.32 deleterious(0) probably_damaging(1) TCGA-05-4427-01 3 187419860 187419860 C A RTP2 Missense_Mutation p.E19D 0.34 tolerated(0.09) benign(0.222) TCGA-05-4427-01 3 191078943 191078943 G A CCDC50 Missense_Mutation p.D109N 0.32 deleterious(0) probably_damaging(0.972) TCGA-05-4427-01 3 193377302 193377302 A T OPA1 Silent p.P806P 0.20 TCGA-05-4427-01 3 194062503 194062503 G T CPN2 Missense_Mutation p.A310D 0.53 deleterious(0.01) probably_damaging(0.932) TCGA-05-4427-01 3 195012484 195012484 C G ACAP2 Missense_Mutation p.V672L 0.29 tolerated(0.36) benign(0.002) TCGA-05-4427-01 3 195936325 195936325 G T ZDHHC19 Silent p.R110R 0.29 TCGA-05-4427-01 3 197619552 197619552 G C IQCG Missense_Mutation p.L348V 0.21 deleterious(0) possibly_damaging(0.831) TCGA-05-4427-01 3 197670690 197670690 T C IQCG Missense_Mutation p.I81V 0.37 deleterious(0.05) benign(0.333) TCGA-05-4427-01 3 21478591 21478591 T C ZNF385D Missense_Mutation p.T182A 0.04 tolerated(0.75) possibly_damaging(0.899) TCGA-05-4427-01 3 32201069 32201069 G C GPD1L Missense_Mutation p.E288Q 0.08 tolerated(0.34) benign(0.029) TCGA-05-4427-01 3 33135177 33135177 C T TMPPE Missense_Mutation p.G171R 0.16 deleterious(0.04) benign(0.04) TCGA-05-4427-01 3 35723355 35723356 GA - ARPP21 Frame_Shift_Del p.K39Tfs*25 0.46 TCGA-05-4427-01 3 39110337 39110337 G T WDR48 Missense_Mutation p.G186V 0.39 deleterious(0) probably_damaging(1) TCGA-05-4427-01 3 42448757 42448757 C A LYZL4 5'UTR 0.30 TCGA-05-4427-01 3 44932143 44932143 C A TGM4 Missense_Mutation p.Q117K 0.30 tolerated(0.31) benign(0) TCGA-05-4427-01 3 47162473 47162473 T G SETD2 Missense_Mutation p.Q1218P 0.13 deleterious(0.04) possibly_damaging(0.791) TCGA-05-4427-01 3 49044257 49044257 C A P4HTM Missense_Mutation p.R537S 0.29 tolerated(0.11) possibly_damaging(0.718) TCGA-05-4427-01 3 49568631 49568631 G A DAG1 Silent p.P229P 0.09 TCGA-05-4427-01 3 49736441 49736441 G A RNF123 Missense_Mutation p.E223K 0.07 tolerated(0.4) benign(0.257) TCGA-05-4427-01 3 52427383 52427383 G T DNAH1 Missense_Mutation p.R3503L 0.14 benign(0.051) TCGA-05-4427-01 3 52864568 52864568 C G ITIH4 Splice_Site p.X30_splice 0.16 TCGA-05-4427-01 3 52941692 52941692 C T SFMBT1 Missense_Mutation p.S655N 0.47 tolerated(0.29) benign(0.051) TCGA-05-4427-01 3 58380797 58380797 G T PXK Nonsense_Mutation p.E230* 0.16 TCGA-05-4427-01 3 62636564 62636564 G T CADPS Missense_Mutation p.N387K 0.42 tolerated(0.93) benign(0.403) TCGA-05-4427-01 3 65349168 65349168 C A MAGI1 Missense_Mutation p.G1156V 0.37 deleterious(0.03) probably_damaging(1) TCGA-05-4427-01 3 65416486 65416486 G C MAGI1 Missense_Mutation p.S478R 0.10 deleterious(0) probably_damaging(0.993) TCGA-05-4427-01 3 7188146 7188146 A T GRM7 Missense_Mutation p.Q176L 0.11 deleterious(0) probably_damaging(0.988) TCGA-05-4427-01 3 72890352 72890352 T C SHQ1 Splice_Site p.X111_splice 0.35 TCGA-05-4427-01 3 78666912 78666912 G A ROBO1 Silent p.S1385S 0.12 TCGA-05-4427-01 3 88205744 88205744 G T C3orf38 Missense_Mutation p.V317L 0.32 tolerated_low_confidence(0.29) benign(0.072) TCGA-05-4427-01 3 89176389 89176389 G T EPHA3 Missense_Mutation p.G40V 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-05-4427-01 3 89259253 89259253 G T EPHA3 Missense_Mutation p.V133L 0.30 tolerated(0.21) benign(0.119) TCGA-05-4427-01 3 89390098 89390098 G A EPHA3 Missense_Mutation p.G283S 0.28 tolerated(0.28) possibly_damaging(0.686) TCGA-05-4427-01 3 9055012 9055012 C A SRGAP3 Missense_Mutation p.M709I 0.29 deleterious(0.04) probably_damaging(0.921) TCGA-05-4427-01 3 9166584 9166584 C A SRGAP3 Missense_Mutation p.V29L 0.38 tolerated(0.15) probably_damaging(0.992) TCGA-05-4427-01 3 93605208 93605208 C A PROS1 Missense_Mutation p.R432L 0.32 tolerated(0.57) benign(0.128) TCGA-05-4427-01 3 93605209 93605209 G A PROS1 Missense_Mutation p.R432W 0.32 tolerated(0.11) probably_damaging(0.954) TCGA-05-4427-01 3 9594110 9594110 C G LHFPL4 Missense_Mutation p.S85T 0.33 tolerated(0.12) benign(0.219) TCGA-05-4427-01 3 9710414 9710414 G T MTMR14 Missense_Mutation p.R143S 0.32 deleterious(0) probably_damaging(0.942) TCGA-05-4427-01 3 97806152 97806152 G T OR5AC2 Nonsense_Mutation p.G46* 0.38 TCGA-05-4427-01 3 98240144 98240144 T C CLDND1 Missense_Mutation p.N65S 0.28 tolerated(0.17) possibly_damaging(0.877) TCGA-05-4427-01 4 100340266 100340266 C G ADH7 Missense_Mutation p.A300P 0.25 tolerated(0.09) possibly_damaging(0.658) TCGA-05-4427-01 4 100349701 100349701 C T ADH7 Silent p.E89E 0.04 TCGA-05-4427-01 4 101331438 101331438 C T EMCN Splice_Site 0.11 TCGA-05-4427-01 4 103531829 103531829 G A NFKB1 Silent p.T775T 0.20 TCGA-05-4427-01 4 109681047 109681047 C A ETNPPL Nonsense_Mutation p.G65* 0.21 TCGA-05-4427-01 4 110681705 110681705 T A CFI Missense_Mutation p.D249V 0.11 deleterious(0) probably_damaging(1) TCGA-05-4427-01 4 123264729 123264729 G T KIAA1109 Missense_Mutation p.A4173S 0.45 benign(0.003) TCGA-05-4427-01 4 123377449 123377449 A T IL2 Missense_Mutation p.N49K 0.24 tolerated(0.57) benign(0.055) TCGA-05-4427-01 4 126320037 126320037 G A FAT4 Silent p.K1758K 0.39 TCGA-05-4427-01 4 126402752 126402752 G T FAT4 Silent p.R4225R 0.14 TCGA-05-4427-01 4 134071523 134071523 C A PCDH10 Missense_Mutation p.N76K 0.53 tolerated(0.33) benign(0.037) TCGA-05-4427-01 4 134075490 134075490 A T PCDH10 Missense_Mutation p.Y887F 0.23 tolerated(0.17) benign(0.164) TCGA-05-4427-01 4 13603728 13603728 C T BOD1L1 Missense_Mutation p.G1599E 0.20 probably_damaging(1) TCGA-05-4427-01 4 13606445 13606445 C T BOD1L1 Silent p.Q693Q 0.11 TCGA-05-4427-01 4 13612688 13612688 T C BOD1L1 Missense_Mutation p.Q454R 0.12 possibly_damaging(0.642) TCGA-05-4427-01 4 154216897 154216897 G T TRIM2 Nonsense_Mutation p.E407* 0.32 TCGA-05-4427-01 4 164394640 164394640 G T TKTL2 Missense_Mutation p.L83I 0.40 deleterious(0.01) possibly_damaging(0.76) TCGA-05-4427-01 4 164436533 164436533 G A TMA16 Missense_Mutation p.G103E 0.08 deleterious(0) probably_damaging(0.955) TCGA-05-4427-01 4 16504244 16504244 G T LDB2 3'UTR 0.42 TCGA-05-4427-01 4 16899977 16899977 C T LDB2 Silent p.E44E 0.44 TCGA-05-4427-01 4 169337907 169337907 C T DDX60L Silent p.E884E 0.17 TCGA-05-4427-01 4 177604990 177604991 - A VEGFC 3'UTR 0.31 TCGA-05-4427-01 4 178272695 178272695 G T NEIL3 Missense_Mutation p.R344M 0.30 deleterious(0) probably_damaging(0.991) TCGA-05-4427-01 4 183652154 183652154 C A TENM3 Silent p.V943V 0.12 TCGA-05-4427-01 4 190947568 190947568 C T FRG2 Missense_Mutation p.S101N 0.14 tolerated(0.7) benign(0.037) TCGA-05-4427-01 4 2757801 2757801 C G TNIP2 Silent p.A72A 0.33 TCGA-05-4427-01 4 3174698 3174698 A T HTT Missense_Mutation p.S1336C 0.58 benign(0.005) TCGA-05-4427-01 4 39780016 39780016 G A UBE2K Missense_Mutation p.D189N 0.38 tolerated(0.23) benign(0.011) TCGA-05-4427-01 4 40104082 40104082 C G N4BP2 Missense_Mutation p.S206C 0.48 tolerated(0.23) probably_damaging(0.959) TCGA-05-4427-01 4 40104131 40104131 C T N4BP2 Silent p.N222N 0.46 TCGA-05-4427-01 4 44693729 44693729 G C GUF1 Missense_Mutation p.R509T 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-05-4427-01 4 5664911 5664911 C G EVC2 Missense_Mutation p.E356D 0.50 deleterious(0.02) possibly_damaging(0.856) TCGA-05-4427-01 4 56858234 56858234 A G CEP135 Silent p.T664T 0.12 TCGA-05-4427-01 4 57189609 57189609 C T KIAA1211 Missense_Mutation p.A1085V 0.47 deleterious(0) possibly_damaging(0.682) TCGA-05-4427-01 4 5721080 5721080 A T EVC Nonsense_Mutation p.K94* 0.11 TCGA-05-4427-01 4 57839404 57839404 G C NOA1 Missense_Mutation p.H475Q 0.55 tolerated(0.58) benign(0.011) TCGA-05-4427-01 4 5843073 5843073 T C CRMP1 Missense_Mutation p.K372R 0.50 tolerated(0.19) benign(0.086) TCGA-05-4427-01 4 6325266 6325266 G A PPP2R2C Silent p.T369T 0.26 TCGA-05-4427-01 4 65274936 65274936 G T TECRL Missense_Mutation p.P45H 0.12 tolerated(0.31) benign(0.007) TCGA-05-4427-01 4 66213885 66213885 C T EPHA5 Missense_Mutation p.A849T 0.10 deleterious(0) probably_damaging(0.993) TCGA-05-4427-01 4 69107491 69107491 G T TMPRSS11B Missense_Mutation p.L14I 0.36 tolerated(0.15) benign(0.006) TCGA-05-4427-01 4 71232510 71232510 T C SMR3A Silent p.S68S 0.11 TCGA-05-4427-01 4 71654661 71654661 C A RUFY3 Missense_Mutation p.L404I 0.49 tolerated(1) benign(0.084) TCGA-05-4427-01 4 73923758 73923758 C A COX18 3'UTR 0.44 TCGA-05-4427-01 4 73957800 73957800 C A ANKRD17 Missense_Mutation p.A1849S 0.13 benign(0) TCGA-05-4427-01 4 74277834 74277834 G T ALB Missense_Mutation p.D279Y 0.43 deleterious(0) probably_damaging(0.957) TCGA-05-4427-01 4 74353498 74353498 G - AFM Frame_Shift_Del p.A226Hfs*3 0.15 TCGA-05-4427-01 4 74450995 74450995 C G RASSF6 Missense_Mutation p.A189P 0.16 deleterious(0) probably_damaging(0.993) TCGA-05-4427-01 4 82348914 82348914 C A RASGEF1B 3'UTR 0.11 TCGA-05-4427-01 4 845702 845702 C A GAK Missense_Mutation p.G1115V 0.17 tolerated(0.11) benign(0.006) TCGA-05-4427-01 4 94344030 94344030 T A GRID2 Missense_Mutation p.Y486N 0.13 deleterious(0) probably_damaging(0.998) TCGA-05-4427-01 4 9783983 9783983 A T DRD5 Silent p.G110G 0.09 TCGA-05-4427-01 5 101755679 101755679 A T SLCO6A1 Silent p.G441G 0.58 TCGA-05-4427-01 5 11117571 11117571 G T CTNND2 Silent p.I756I 0.27 TCGA-05-4427-01 5 126667056 126667056 G T MEGF10 Missense_Mutation p.W19L 0.50 tolerated(1) benign(0.001) TCGA-05-4427-01 5 126770409 126770409 G C MEGF10 Missense_Mutation p.C624S 0.63 deleterious(0) probably_damaging(0.999) TCGA-05-4427-01 5 128302151 128302151 G T SLC27A6 Silent p.T107T 0.39 TCGA-05-4427-01 5 131931411 131931411 C G RAD50 Missense_Mutation p.R706G 0.62 deleterious(0.01) probably_damaging(0.933) TCGA-05-4427-01 5 133496754 133496754 T C SKP1 Missense_Mutation p.K80R 0.26 tolerated(0.27) benign(0.006) TCGA-05-4427-01 5 140166920 140166920 G T PCDHA1 Nonsense_Mutation p.E349* 0.58 TCGA-05-4427-01 5 140181571 140181571 C A PCDHA3 Silent p.T263T 0.61 TCGA-05-4427-01 5 140182007 140182007 C A PCDHA3 Missense_Mutation p.L409M 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-05-4427-01 5 140188758 140188758 G T PCDHA4 Silent p.T662T 0.67 TCGA-05-4427-01 5 140250429 140250429 C A PCDHA11 Missense_Mutation p.P581T 0.18 tolerated_low_confidence(0.26) possibly_damaging(0.783) TCGA-05-4427-01 5 140474955 140474955 C A PCDHB2 Missense_Mutation p.P194Q 0.58 deleterious_low_confidence(0) probably_damaging(1) TCGA-05-4427-01 5 140593773 140593773 G T PCDHB13 Silent p.A26A 0.09 TCGA-05-4427-01 5 140729929 140729929 G A PCDHGB1 Silent p.T34T 0.39 TCGA-05-4427-01 5 140730620 140730620 G C PCDHGB1 Missense_Mutation p.D265H 0.51 deleterious(0) probably_damaging(1) TCGA-05-4427-01 5 140750336 140750336 T A PCDHGB3 Missense_Mutation p.D125E 0.47 deleterious(0) probably_damaging(1) TCGA-05-4427-01 5 143241 143241 G T PLEKHG4B Silent p.V163V 0.29 TCGA-05-4427-01 5 1474090 1474090 C T LPCAT1 Missense_Mutation p.M387I 0.19 tolerated(0.06) benign(0.021) TCGA-05-4427-01 5 149434825 149434825 G T CSF1R Missense_Mutation p.Q877K 0.56 tolerated(0.06) benign(0.388) TCGA-05-4427-01 5 150138538 150138538 C T DCTN4 Silent p.Q6Q 0.15 TCGA-05-4427-01 5 151271897 151271897 A G GLRA1 Silent p.D53D 0.20 TCGA-05-4427-01 5 154393713 154393713 G - KIF4B Frame_Shift_Del p.G99Efs*20 0.33 TCGA-05-4427-01 5 156482498 156482498 A T HAVCR1 Silent p.S31S 0.59 TCGA-05-4427-01 5 156890271 156890271 C G NIPAL4 Silent p.L131L 0.57 TCGA-05-4427-01 5 157065668 157065668 G T SOX30 Missense_Mutation p.L484I 0.30 tolerated(0.07) benign(0.23) TCGA-05-4427-01 5 159854761 159854761 C G PTTG1 Missense_Mutation p.A137G 0.19 deleterious(0.02) probably_damaging(0.92) TCGA-05-4427-01 5 160114961 160114961 T C ATP10B Missense_Mutation p.N41D 0.40 tolerated(0.33) benign(0.169) TCGA-05-4427-01 5 162015 162015 G T PLEKHG4B Nonsense_Mutation p.G513* 0.31 TCGA-05-4427-01 5 16685846 16685846 C A MYO10 Splice_Site p.X1330_splice 0.18 TCGA-05-4427-01 5 171544485 171544485 C A STK10 Missense_Mutation p.A174S 0.83 deleterious(0) probably_damaging(0.992) TCGA-05-4427-01 5 171765892 171765892 C A SH3PXD2B Silent p.V739V 0.64 TCGA-05-4427-01 5 176301474 176301474 C G UNC5A Missense_Mutation p.Q429E 0.60 tolerated(0.16) benign(0.05) TCGA-05-4427-01 5 178391974 178391974 G T ZNF454 Missense_Mutation p.S190I 0.55 tolerated(0.13) benign(0.415) TCGA-05-4427-01 5 178552069 178552069 G T ADAMTS2 Missense_Mutation p.H955N 0.46 tolerated(0.2) benign(0.267) TCGA-05-4427-01 5 179251054 179251054 C T SQSTM1 Silent p.L166L 0.15 TCGA-05-4427-01 5 19473540 19473540 G T CDH18 Missense_Mutation p.A723E 0.12 deleterious(0.02) possibly_damaging(0.76) TCGA-05-4427-01 5 24537756 24537756 C A CDH10 Nonsense_Mutation p.G87* 0.24 TCGA-05-4427-01 5 24593590 24593590 G T CDH10 Missense_Mutation p.H4N 0.31 tolerated(0.56) benign(0.002) TCGA-05-4427-01 5 26988225 26988225 T C CDH9 Silent p.Q72Q 0.22 TCGA-05-4427-01 5 31294153 31294153 G T CDH6 Nonsense_Mutation p.E105* 0.10 TCGA-05-4427-01 5 31322999 31322999 A T CDH6 Nonsense_Mutation p.R653* 0.39 TCGA-05-4427-01 5 33457487 33457487 A T TARS Silent p.R354R 0.21 TCGA-05-4427-01 5 33457488 33457488 G T TARS Missense_Mutation p.D355Y 0.22 deleterious(0) probably_damaging(0.998) TCGA-05-4427-01 5 33989210 33989210 T - AMACR Intron 0.11 TCGA-05-4427-01 5 35697879 35697879 A G SPEF2 Missense_Mutation p.I709V 0.38 tolerated(0.06) benign(0) TCGA-05-4427-01 5 36117869 36117869 C A LMBRD2 Missense_Mutation p.A424S 0.12 deleterious(0.03) probably_damaging(0.998) TCGA-05-4427-01 5 39377209 39377209 G A DAB2 Silent p.P560P 0.10 TCGA-05-4427-01 5 41042216 41042216 T C MROH2B Missense_Mutation p.N644S 0.17 tolerated(0.63) benign(0.005) TCGA-05-4427-01 5 41201792 41201792 G T C6 Nonsense_Mutation p.Y56* 0.24 TCGA-05-4427-01 5 45267278 45267278 C A HCN1 Missense_Mutation p.V566L 0.17 deleterious(0) probably_damaging(0.977) TCGA-05-4427-01 5 52370967 52370967 G A ITGA2 Missense_Mutation p.S914N 0.27 deleterious(0) probably_damaging(0.999) TCGA-05-4427-01 5 66462834 66462834 G T MAST4 Silent p.R2609R 0.16 TCGA-05-4427-01 5 71495211 71495211 C A MAP1B Missense_Mutation p.T2010N 0.40 possibly_damaging(0.785) TCGA-05-4427-01 5 75914019 75914019 G A F2RL2 Silent p.V171V 0.11 TCGA-05-4427-01 5 75954415 75954415 A G IQGAP2 Missense_Mutation p.N818D 0.10 deleterious(0) probably_damaging(0.915) TCGA-05-4427-01 5 82373273 82373273 G T TMEM167A 5'UTR 0.39 TCGA-05-4427-01 5 89924545 89924545 C T GPR98 Missense_Mutation p.L469F 0.53 possibly_damaging(0.86) TCGA-05-4427-01 5 89938559 89938559 A G GPR98 Missense_Mutation p.R783G 0.65 benign(0.012) TCGA-05-4427-01 6 101037629 101037629 C A ASCC3 Nonsense_Mutation p.E1811* 0.10 TCGA-05-4427-01 6 108843692 108843692 G T LACE1 3'UTR 0.56 TCGA-05-4427-01 6 110778046 110778046 G T SLC22A16 Silent p.A76A 0.44 TCGA-05-4427-01 6 119327671 119327671 C T FAM184A Missense_Mutation p.E586K 0.10 deleterious(0) probably_damaging(0.994) TCGA-05-4427-01 6 123319273 123319273 G A CLVS2 Silent p.K117K 0.45 TCGA-05-4427-01 6 126319437 126319437 A G TRMT11 Silent p.Q121Q 0.19 TCGA-05-4427-01 6 130762771 130762771 C G TMEM200A Missense_Mutation p.R402G 0.18 tolerated(0.76) possibly_damaging(0.855) TCGA-05-4427-01 6 136597158 136597158 G A BCLAF1 Missense_Mutation p.S502F 0.12 deleterious(0.02) possibly_damaging(0.683) TCGA-05-4427-01 6 136600943 136600943 G T BCLAF1 Missense_Mutation p.S21Y 0.21 deleterious_low_confidence(0) unknown(0) TCGA-05-4427-01 6 139694840 139694840 C A CITED2 Missense_Mutation p.G81V 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-05-4427-01 6 150114744 150114744 A C PCMT1 Silent p.S177S 0.10 TCGA-05-4427-01 6 152826529 152826529 C A SYNE1 Missense_Mutation p.Q195H 0.22 benign(0.008) TCGA-05-4427-01 6 158502332 158502332 G T SYNJ2 Missense_Mutation p.G920V 0.19 tolerated(0.07) benign(0.219) TCGA-05-4427-01 6 160482939 160482939 G T IGF2R Silent p.T1187T 0.20 TCGA-05-4427-01 6 160903769 160903769 G A LPAL2 RNA 0.14 TCGA-05-4427-01 6 161022112 161022112 G A LPA Silent p.Y988Y 0.38 TCGA-05-4427-01 6 166844023 166844023 C T RPS6KA2 Missense_Mutation p.R508Q 0.28 tolerated(0.16) benign(0.006) TCGA-05-4427-01 6 170697491 170697491 G T FAM120B Missense_Mutation p.M800I 0.39 deleterious(0) probably_damaging(0.984) TCGA-05-4427-01 6 17764426 17764426 T G KIF13A Missense_Mutation p.H1778P 0.16 tolerated_low_confidence(0.31) benign(0) TCGA-05-4427-01 6 17799501 17799501 C A KIF13A Missense_Mutation p.C929F 0.16 tolerated(0.07) possibly_damaging(0.498) TCGA-05-4427-01 6 26377086 26377086 G T BTN3A2 3'UTR 0.11 TCGA-05-4427-01 6 29364671 29364671 C A OR12D2 Silent p.S65S 0.24 TCGA-05-4427-01 6 31116273 31116273 G T CCHCR1 Missense_Mutation p.L497M 0.26 deleterious(0.03) probably_damaging(0.973) TCGA-05-4427-01 6 32135410 32135410 T A EGFL8 Missense_Mutation p.L271Q 0.63 deleterious(0) probably_damaging(0.998) TCGA-05-4427-01 6 33236392 33236392 A T VPS52 Missense_Mutation p.F195I 0.12 deleterious(0) probably_damaging(0.998) TCGA-05-4427-01 6 36653568 36653568 G T CDKN1A Missense_Mutation p.R162S 0.70 tolerated(0.15) possibly_damaging(0.558) TCGA-05-4427-01 6 36711516 36711516 C T CPNE5 Missense_Mutation p.D505N 0.16 tolerated(0.25) probably_damaging(0.964) TCGA-05-4427-01 6 4037797 4037797 C G PRPF4B Missense_Mutation p.R469G 0.11 tolerated(0.12) benign(0.25) TCGA-05-4427-01 6 44145116 44145116 C A CAPN11 Missense_Mutation p.Q459K 0.14 tolerated(0.19) benign(0.008) TCGA-05-4427-01 6 44201300 44201300 C G SLC29A1 3'UTR 0.73 TCGA-05-4427-01 6 49696492 49696492 A G CRISP3 Missense_Mutation p.V253A 0.12 deleterious(0.01) benign(0.381) TCGA-05-4427-01 6 54122140 54122140 A T MLIP Missense_Mutation p.E451V 0.17 deleterious(0) benign(0.359) TCGA-05-4427-01 6 55145149 55145149 G C HCRTR2 Missense_Mutation p.D338H 0.20 deleterious(0.01) possibly_damaging(0.642) TCGA-05-4427-01 6 56328462 56328462 C T DST Silent p.R4973R 0.72 TCGA-05-4427-01 6 56472827 56472827 A T DST Intron 0.14 TCGA-05-4427-01 6 57512650 57512650 C G PRIM2 3'UTR 0.09 TCGA-05-4427-01 6 63990433 63990433 C T LGSN Silent p.G341G 0.44 TCGA-05-4427-01 6 64286797 64286797 G A PTP4A1 Missense_Mutation p.M4I 0.14 deleterious(0.02) benign(0.007) TCGA-05-4427-01 6 66054071 66054071 C A EYS Splice_Site p.X487_splice 0.21 TCGA-05-4427-01 6 6654824 6654824 C A LY86 Silent p.T151T 0.81 TCGA-05-4427-01 6 70048873 70048873 C T BAI3 Missense_Mutation p.T1085I 0.48 deleterious(0.02) probably_damaging(0.995) TCGA-05-4427-01 6 70778330 70778330 C A COL19A1 Missense_Mutation p.Q396K 0.20 tolerated(0.55) unknown(0) TCGA-05-4427-01 6 76385184 76385184 G T SENP6 Nonsense_Mutation p.E476* 0.08 TCGA-05-4427-01 6 83602681 83602681 C A UBE3D 3'UTR 0.20 TCGA-05-4427-01 6 84563488 84563488 A T RIPPLY2 Missense_Mutation p.E57V 0.45 deleterious(0.02) possibly_damaging(0.759) TCGA-05-4427-01 6 86324916 86324916 T A SYNCRIP Missense_Mutation p.Y477F 0.24 tolerated(0.23) unknown(0) TCGA-05-4427-01 6 89790745 89790745 G A PNRC1 Silent p.R44R 0.18 TCGA-05-4427-01 6 93956565 93956565 C A EPHA7 Missense_Mutation p.D891Y 0.27 deleterious(0) possibly_damaging(0.683) TCGA-05-4427-01 6 93964499 93964499 C A EPHA7 Missense_Mutation p.V800L 0.27 deleterious(0) probably_damaging(0.981) TCGA-05-4427-01 6 96651104 96651104 T A FUT9 Missense_Mutation p.C25S 0.25 deleterious(0.03) benign(0.007) TCGA-05-4427-01 6 99322095 99322095 C A FBXL4 3'UTR 0.39 TCGA-05-4427-01 7 100205094 100205094 G T PCOLCE Missense_Mutation p.K320N 0.05 deleterious(0.04) probably_damaging(0.946) TCGA-05-4427-01 7 100459533 100459533 G T SLC12A9 Missense_Mutation p.D571Y 0.35 deleterious(0) possibly_damaging(0.684) TCGA-05-4427-01 7 100468219 100468219 G T TRIP6 Missense_Mutation p.D285Y 0.30 deleterious(0.02) probably_damaging(0.996) TCGA-05-4427-01 7 100552062 100552062 T A MUC3A Missense_Mutation p.S271R 0.11 tolerated(0.19) possibly_damaging(0.599) TCGA-05-4427-01 7 100675478 100675478 G T MUC17 Nonsense_Mutation p.E261* 0.13 TCGA-05-4427-01 7 100685708 100685708 C A MUC17 Missense_Mutation p.Q3671K 0.52 benign(0.001) TCGA-05-4427-01 7 100686002 100686002 C A MUC17 Missense_Mutation p.P3769T 0.19 benign(0) TCGA-05-4427-01 7 103008535 103008535 G T PSMC2 3'UTR 0.17 TCGA-05-4427-01 7 103185752 103185752 G A RELN Silent p.A2114A 0.17 TCGA-05-4427-01 7 105664968 105664968 A G CDHR3 Missense_Mutation p.R740G 0.09 tolerated(0.14) benign(0.367) TCGA-05-4427-01 7 107600208 107600208 G C LAMB1 Missense_Mutation p.P796A 0.24 tolerated(0.13) possibly_damaging(0.861) TCGA-05-4427-01 7 110526649 110526649 C A IMMP2L Silent p.P136P 0.11 TCGA-05-4427-01 7 110764558 110764558 T A LRRN3 Missense_Mutation p.V577E 0.10 tolerated(1) benign(0.015) TCGA-05-4427-01 7 114302190 114302190 G A FOXP2 Nonsense_Mutation p.W598* 0.11 TCGA-05-4427-01 7 11521554 11521554 G T THSD7A Silent p.A626A 0.18 TCGA-05-4427-01 7 117432814 117432814 G T CTTNBP2 Missense_Mutation p.L146I 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-05-4427-01 7 120767242 120767242 C T CPED1 Silent p.F411F 0.26 TCGA-05-4427-01 7 121011399 121011399 C G FAM3C Missense_Mutation p.G76A 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-05-4427-01 7 122635151 122635151 C G TAS2R16 Missense_Mutation p.A180P 0.41 tolerated(0.22) benign(0.003) TCGA-05-4427-01 7 132192628 132192628 C - PLXNA4 Frame_Shift_Del p.Y276Ifs*6 0.22 TCGA-05-4427-01 7 134879797 134879797 T A WDR91 Silent p.V428V 0.11 TCGA-05-4427-01 7 136699793 136699793 T C CHRM2 Missense_Mutation p.F61L 0.29 deleterious(0) probably_damaging(1) TCGA-05-4427-01 7 136700022 136700022 C G CHRM2 Missense_Mutation p.T137R 0.13 deleterious(0.04) possibly_damaging(0.649) TCGA-05-4427-01 7 136700794 136700794 G T CHRM2 Missense_Mutation p.L394F 0.23 tolerated(0.15) probably_damaging(0.99) TCGA-05-4427-01 7 136700962 136700962 C A CHRM2 Silent p.T450T 0.23 TCGA-05-4427-01 7 137172361 137172361 G C DGKI Missense_Mutation p.Q793E 0.22 tolerated(0.09) benign(0.012) TCGA-05-4427-01 7 137263044 137263044 C T DGKI Missense_Mutation p.R557H 0.09 deleterious(0.02) possibly_damaging(0.58) TCGA-05-4427-01 7 139791672 139791672 G T KDM7A Nonsense_Mutation p.S888* 0.21 TCGA-05-4427-01 7 141423010 141423010 C A WEE2 Silent p.I319I 0.22 TCGA-05-4427-01 7 141631528 141631528 G - CLEC5A Frame_Shift_Del p.F148Lfs*19 0.15 TCGA-05-4427-01 7 141957548 141957548 T G PRSS58 5'UTR 0.15 TCGA-05-4427-01 7 142028318 142028318 C A TRBV6-1 Missense_Mutation p.P18T 0.11 tolerated(0.49) benign(0.006) TCGA-05-4427-01 7 142099936 142099936 C A TRBV7-8 Translation_Start_Site p.M1? 0.21 deleterious(0) possibly_damaging(0.903) TCGA-05-4427-01 7 142479944 142479944 G - PRSS3P2 RNA 0.23 TCGA-05-4427-01 7 142630652 142630652 G T TRPV5 5'UTR 0.32 TCGA-05-4427-01 7 142749623 142749623 C A OR6V1 Silent p.G62G 0.10 TCGA-05-4427-01 7 142989412 142989412 G T CASP2 Missense_Mutation p.S82I 0.22 deleterious(0.05) possibly_damaging(0.609) TCGA-05-4427-01 7 146471471 146471471 G A CNTNAP2 Missense_Mutation p.G69E 0.30 tolerated(0.44) benign(0.017) TCGA-05-4427-01 7 148875854 148875854 C G ZNF398 Missense_Mutation p.A297G 0.25 tolerated(0.35) benign(0.063) TCGA-05-4427-01 7 149490435 149490435 G T SSPO RNA 0.15 TCGA-05-4427-01 7 150269586 150269586 A G GIMAP4 Missense_Mutation p.E143G 0.11 tolerated(0.26) benign(0.038) TCGA-05-4427-01 7 150558147 150558147 C - AOC1 Frame_Shift_Del p.P703Qfs*12 0.16 TCGA-05-4427-01 7 151871326 151871326 A C KMT2C Missense_Mutation p.D3088E 0.09 probably_damaging(0.997) TCGA-05-4427-01 7 155255288 155255288 C T EN2 Missense_Mutation p.T303M 0.10 deleterious(0) possibly_damaging(0.65) TCGA-05-4427-01 7 157364164 157364164 C A PTPRN2 Missense_Mutation p.R935S 0.20 deleterious(0) probably_damaging(0.91) TCGA-05-4427-01 7 157364165 157364165 C A PTPRN2 Missense_Mutation p.R935M 0.20 deleterious(0) probably_damaging(0.945) TCGA-05-4427-01 7 157985171 157985171 C A PTPRN2 Missense_Mutation p.V133F 0.21 deleterious(0.01) benign(0.27) TCGA-05-4427-01 7 22259521 22259521 C G RAPGEF5 Missense_Mutation p.L167F 0.24 deleterious(0) probably_damaging(0.988) TCGA-05-4427-01 7 31682505 31682505 G T CCDC129 Silent p.L533L 0.27 TCGA-05-4427-01 7 31682811 31682811 C A CCDC129 Missense_Mutation p.F635L 0.28 tolerated(0.36) benign(0.023) TCGA-05-4427-01 7 34889356 34889356 C A NPSR1 Intron 0.33 TCGA-05-4427-01 7 37780395 37780395 G A GPR141 Missense_Mutation p.A134T 0.28 deleterious(0.01) probably_damaging(0.971) TCGA-05-4427-01 7 38768139 38768139 T A VPS41 Intron 0.16 TCGA-05-4427-01 7 42004503 42004503 C A GLI3 Missense_Mutation p.G1390W 0.38 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-05-4427-01 7 45145229 45145229 C T TBRG4 Silent p.K182K 0.34 TCGA-05-4427-01 7 48046873 48046873 G A SUN3 Silent p.I127I 0.24 TCGA-05-4427-01 7 50514648 50514648 C A FIGNL1 Missense_Mutation p.S113I 0.31 tolerated(0.14) benign(0.11) TCGA-05-4427-01 7 57187958 57187958 T G ZNF479 Missense_Mutation p.Q388H 0.14 deleterious(0) possibly_damaging(0.722) TCGA-05-4427-01 7 57188160 57188160 C A ZNF479 Missense_Mutation p.G321V 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-05-4427-01 7 57188767 57188767 C A ZNF479 Nonsense_Mutation p.G119* 0.23 TCGA-05-4427-01 7 75398949 75398949 C T CCL26 3'UTR 0.17 TCGA-05-4427-01 7 75517545 75517545 G T RHBDD2 Missense_Mutation p.G325C 0.26 tolerated_low_confidence(0.1) benign(0.062) TCGA-05-4427-01 7 76033639 76033639 G C SRCRB4D Missense_Mutation p.L40V 0.21 tolerated(0.16) benign(0.008) TCGA-05-4427-01 7 81355281 81355281 A T HGF Missense_Mutation p.C365S 0.11 deleterious(0) probably_damaging(0.999) TCGA-05-4427-01 7 82579536 82579536 G C PCLO Missense_Mutation p.S3456R 0.05 unknown(0) TCGA-05-4427-01 7 86394889 86394889 C A GRM3 Missense_Mutation p.A143E 0.23 deleterious(0.02) probably_damaging(0.977) TCGA-05-4427-01 7 87190635 87190635 G T ABCB1 Silent p.V257V 0.29 TCGA-05-4427-01 7 88423952 88423952 G A C7orf62 Missense_Mutation p.S102F 0.20 deleterious(0) probably_damaging(0.969) TCGA-05-4427-01 7 88965810 88965810 C A ZNF804B Missense_Mutation p.Q1172K 0.11 deleterious(0) probably_damaging(0.997) TCGA-05-4427-01 7 91736614 91736614 A T AKAP9 Missense_Mutation p.E3808D 0.29 benign(0.014) TCGA-05-4427-01 7 92099434 92099434 T A ERVW-1 Missense_Mutation p.T88S 0.33 deleterious(0.04) benign(0.295) TCGA-05-4427-01 7 92761288 92761288 C T SAMD9L Missense_Mutation p.E1333K 0.30 deleterious(0.03) benign(0.17) TCGA-05-4427-01 7 93098112 93098112 A G CALCR Missense_Mutation p.Y164H 0.39 deleterious(0.04) probably_damaging(0.964) TCGA-05-4427-01 7 94028386 94028386 G T COL1A2 Missense_Mutation p.R41L 0.25 unknown(0) TCGA-05-4427-01 7 94040229 94040229 G T COL1A2 Missense_Mutation p.G409V 0.36 probably_damaging(0.999) TCGA-05-4427-01 7 94293376 94293376 A T PEG10 Nonsense_Mutation p.K170* 0.11 TCGA-05-4427-01 7 95657491 95657491 C A DYNC1I1 Missense_Mutation p.S342Y 0.30 deleterious(0.01) possibly_damaging(0.707) TCGA-05-4427-01 7 98515286 98515286 G T TRRAP Missense_Mutation p.R869L 0.25 probably_damaging(0.96) TCGA-05-4427-01 8 10470762 10470762 G T RP1L1 Missense_Mutation p.N282K 0.10 benign(0.064) TCGA-05-4427-01 8 105361064 105361064 G T DCSTAMP Missense_Mutation p.R95M 0.24 deleterious(0) probably_damaging(0.986) TCGA-05-4427-01 8 105405087 105405087 C G DPYS Silent p.T456T 0.15 TCGA-05-4427-01 8 105502807 105502807 C A LRP12 3'UTR 0.17 TCGA-05-4427-01 8 105503499 105503499 C A LRP12 Missense_Mutation p.R661I 0.45 deleterious(0.02) probably_damaging(0.997) TCGA-05-4427-01 8 106813843 106813843 T C ZFPM2 Silent p.P511P 0.11 TCGA-05-4427-01 8 106814156 106814156 C G ZFPM2 Missense_Mutation p.P616A 0.08 tolerated(0.4) benign(0.001) TCGA-05-4427-01 8 110980547 110980547 C G KCNV1 Missense_Mutation p.A425P 0.44 tolerated(1) probably_damaging(0.999) TCGA-05-4427-01 8 113364743 113364743 G A CSMD3 Missense_Mutation p.P2053S 0.15 tolerated(0.08) possibly_damaging(0.85) TCGA-05-4427-01 8 113504786 113504786 G A CSMD3 Missense_Mutation p.S1737L 0.08 deleterious(0.01) possibly_damaging(0.619) TCGA-05-4427-01 8 113662513 113662513 G T CSMD3 Missense_Mutation p.H1024N 0.13 tolerated(1) benign(0.023) TCGA-05-4427-01 8 116631897 116631897 C A TRPS1 Missense_Mutation p.R143I 0.16 deleterious_low_confidence(0) possibly_damaging(0.724) TCGA-05-4427-01 8 124448786 124448786 A T WDYHV1 Missense_Mutation p.T110S 0.29 tolerated(0.71) benign(0.002) TCGA-05-4427-01 8 126379083 126379083 G T NSMCE2 Missense_Mutation p.A234S 0.10 tolerated(0.3) possibly_damaging(0.78) TCGA-05-4427-01 8 131193083 131193083 C A ASAP1 Missense_Mutation p.G192W 0.09 deleterious(0) probably_damaging(0.996) TCGA-05-4427-01 8 133984896 133984896 G A TG Missense_Mutation p.E2037K 0.09 deleterious(0) possibly_damaging(0.637) TCGA-05-4427-01 8 140630624 140630624 G T KCNK9 Silent p.I334I 0.12 TCGA-05-4427-01 8 144652142 144652142 C T MROH6 Silent p.T379T 0.07 TCGA-05-4427-01 8 145689627 145689627 C A CYHR1 Intron 0.19 TCGA-05-4427-01 8 145737889 145737889 C G RECQL4 Missense_Mutation p.G981R 0.21 tolerated(0.21) benign(0.099) TCGA-05-4427-01 8 145830920 145830920 C T ARHGAP39 Missense_Mutation p.R27Q 0.55 deleterious(0.01) probably_damaging(0.981) TCGA-05-4427-01 8 18079725 18079725 G T NAT1 Missense_Mutation p.D119Y 0.13 deleterious(0.01) possibly_damaging(0.653) TCGA-05-4427-01 8 23708865 23708865 C G STC1 Missense_Mutation p.E147D 0.21 tolerated(0.07) benign(0.064) TCGA-05-4427-01 8 30657089 30657089 C G PPP2CB Missense_Mutation p.E95D 0.17 deleterious(0.01) possibly_damaging(0.769) TCGA-05-4427-01 8 30702577 30702577 C A TEX15 Missense_Mutation p.M1319I 0.38 tolerated(0.16) benign(0.011) TCGA-05-4427-01 8 30954341 30954341 G T WRN Silent p.L652L 0.31 TCGA-05-4427-01 8 31004915 31004915 G T WRN Missense_Mutation p.Q1165H 0.16 deleterious(0) probably_damaging(1) TCGA-05-4427-01 8 35647902 35647902 A C UNC5D Missense_Mutation p.S895R 0.09 tolerated(0.24) benign(0.003) TCGA-05-4427-01 8 42852763 42852763 G T HOOK3 Missense_Mutation p.G535C 0.21 deleterious(0.01) probably_damaging(0.983) TCGA-05-4427-01 8 52233380 52233380 G C PXDNL Silent p.R1408R 0.22 TCGA-05-4427-01 8 53045816 53045816 G A ST18 Silent p.N782N 0.49 TCGA-05-4427-01 8 55540660 55540660 A G RP1 Silent p.K1406K 0.06 TCGA-05-4427-01 8 67925301 67925301 T C PPP1R42 Missense_Mutation p.I109M 0.09 deleterious(0) possibly_damaging(0.564) TCGA-05-4427-01 8 73848476 73848476 G T KCNB2 Missense_Mutation p.V296L 0.10 deleterious(0) probably_damaging(0.961) TCGA-05-4427-01 8 75757373 75757373 A T PI15 Missense_Mutation p.I135F 0.29 tolerated(0.08) probably_damaging(0.998) TCGA-05-4427-01 8 77620045 77620045 C A ZFHX4 Missense_Mutation p.T952N 0.11 possibly_damaging(0.607) TCGA-05-4427-01 8 79513982 79513982 G T PKIA Nonsense_Mutation p.E53* 0.62 TCGA-05-4427-01 8 81897386 81897386 C G PAG1 Missense_Mutation p.K167N 0.06 deleterious(0) probably_damaging(0.999) TCGA-05-4427-01 8 86573738 86573738 G T REXO1L1P Silent p.R663R 0.14 TCGA-05-4427-01 8 87076237 87076237 A T PSKH2 Missense_Mutation p.L270H 0.14 deleterious(0) probably_damaging(1) TCGA-05-4427-01 8 87917399 87917399 A C CNBD1 Missense_Mutation p.K83N 0.17 tolerated(0.16) possibly_damaging(0.522) TCGA-05-4427-01 8 89180170 89180170 G T MMP16 Missense_Mutation p.P146H 0.11 tolerated(0.38) benign(0.223) TCGA-05-4427-01 8 91081256 91081256 G C CALB1 Missense_Mutation p.H114Q 0.10 tolerated(0.26) probably_damaging(0.979) TCGA-05-4427-01 8 92406486 92406486 C A SLC26A7 Missense_Mutation p.T659K 0.11 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-05-4427-01 8 96275920 96275921 - T C8orf37 Frame_Shift_Ins p.P80Tfs*3 0.14 TCGA-05-4427-01 9 100892076 100892076 C A CORO2A Missense_Mutation p.G323C 0.40 deleterious(0.04) probably_damaging(1) TCGA-05-4427-01 9 103064539 103064539 A C TEX10 Missense_Mutation p.H908Q 0.05 tolerated(0.12) benign(0.093) TCGA-05-4427-01 9 103204332 103204332 G A MSANTD3 Missense_Mutation p.D38N 0.09 deleterious(0.04) possibly_damaging(0.782) TCGA-05-4427-01 9 105767254 105767254 T C CYLC2 Missense_Mutation p.I114T 0.14 tolerated(0.61) possibly_damaging(0.542) TCGA-05-4427-01 9 107361235 107361235 C A OR13C5 Missense_Mutation p.V154F 0.29 tolerated(0.12) benign(0.024) TCGA-05-4427-01 9 107568678 107568678 C T ABCA1 Nonsense_Mutation p.W1436* 0.32 TCGA-05-4427-01 9 112151516 112151516 C A PTPN3 Silent p.G750G 0.36 TCGA-05-4427-01 9 116154500 116154500 G A ALAD Intron 0.10 TCGA-05-4427-01 9 117808850 117808850 C A TNC Missense_Mutation p.R1655I 0.34 tolerated(0.16) possibly_damaging(0.833) TCGA-05-4427-01 9 118950205 118950205 C A PAPPA Missense_Mutation p.D396E 0.15 tolerated(0.34) benign(0) TCGA-05-4427-01 9 118989776 118989776 T A PAPPA Silent p.A726A 0.31 TCGA-05-4427-01 9 118997687 118997687 T A PAPPA Missense_Mutation p.C835S 0.37 deleterious(0) benign(0.152) TCGA-05-4427-01 9 119114996 119114996 C A PAPPA Missense_Mutation p.L1326I 0.15 tolerated(0.38) benign(0.013) TCGA-05-4427-01 9 119202992 119202992 C A ASTN2 Missense_Mutation p.M1175I 0.35 deleterious(0.01) unknown(0) TCGA-05-4427-01 9 120476556 120476556 C A TLR4 Missense_Mutation p.A717D 0.28 deleterious(0.01) probably_damaging(1) TCGA-05-4427-01 9 120476557 120476557 C T TLR4 Silent p.A717A 0.28 TCGA-05-4427-01 9 123367492 123367492 C T MEGF9 Silent p.T595T 0.07 TCGA-05-4427-01 9 124526082 124526082 G A DAB2IP Missense_Mutation p.A434T 0.26 deleterious(0) benign(0.165) TCGA-05-4427-01 9 125642884 125642884 T C RC3H2 Missense_Mutation p.I317V 0.14 deleterious(0) possibly_damaging(0.558) TCGA-05-4427-01 9 125682049 125682049 G A ZBTB26 Silent p.S55S 0.42 TCGA-05-4427-01 9 127563737 127563737 T G OLFML2A Missense_Mutation p.S238R 0.15 tolerated(0.09) benign(0.133) TCGA-05-4427-01 9 130197409 130197409 A C ZNF79 Missense_Mutation p.Q49P 0.19 tolerated(0.08) benign(0.205) TCGA-05-4427-01 9 135073437 135073437 G T NTNG2 Nonsense_Mutation p.E100* 0.11 TCGA-05-4427-01 9 135942025 135942025 G C CEL Missense_Mutation p.G219A 0.05 deleterious(0) probably_damaging(0.994) TCGA-05-4427-01 9 138378181 138378181 A G PPP1R26 Missense_Mutation p.K609E 0.16 tolerated(0.05) possibly_damaging(0.801) TCGA-05-4427-01 9 139411824 139411824 C T NOTCH1 Silent p.V485V 0.21 TCGA-05-4427-01 9 139686191 139686191 C T TMEM141 Missense_Mutation p.S28L 0.12 deleterious(0) probably_damaging(0.998) TCGA-05-4427-01 9 139745268 139745268 A T PHPT1 Missense_Mutation p.Y116F 0.18 deleterious(0) probably_damaging(0.967) TCGA-05-4427-01 9 140059565 140059565 C T GRIN1 Intron 0.34 TCGA-05-4427-01 9 140059821 140059821 A T GRIN1 Intron 0.16 TCGA-05-4427-01 9 15469012 15469012 A C PSIP1 Silent p.L383L 0.14 TCGA-05-4427-01 9 16436690 16436690 A G BNC2 Missense_Mutation p.M501T 0.21 deleterious(0) probably_damaging(0.985) TCGA-05-4427-01 9 21166573 21166573 C A IFNA21 Silent p.V13V 0.18 TCGA-05-4427-01 9 21304697 21304697 T C IFNA5 Missense_Mutation p.R187G 0.25 tolerated(0.12) benign(0.41) TCGA-05-4427-01 9 22447651 22447651 T A DMRTA1 Missense_Mutation p.L196Q 0.25 tolerated(0.16) possibly_damaging(0.548) TCGA-05-4427-01 9 22451687 22451687 G C DMRTA1 Missense_Mutation p.R431T 0.15 deleterious(0) probably_damaging(0.979) TCGA-05-4427-01 9 22451693 22451693 G C DMRTA1 Missense_Mutation p.G433A 0.37 tolerated(0.15) benign(0.006) TCGA-05-4427-01 9 23692662 23692662 T A ELAVL2 Missense_Mutation p.T325S 0.24 tolerated(0.18) possibly_damaging(0.474) TCGA-05-4427-01 9 37745322 37745322 T A FRMPD1 Missense_Mutation p.I1098N 0.25 tolerated_low_confidence(0.17) benign(0.035) TCGA-05-4427-01 9 37784955 37784955 G A EXOSC3 Silent p.L29L 0.10 TCGA-05-4427-01 9 43627804 43627804 A C SPATA31A6 Missense_Mutation p.S295A 0.07 tolerated(0.42) possibly_damaging(0.469) TCGA-05-4427-01 9 6413470 6413470 G A UHRF2 5'UTR 0.44 TCGA-05-4427-01 9 6477747 6477747 G A UHRF2 Missense_Mutation p.V367M 0.34 tolerated(1) benign(0) TCGA-05-4427-01 9 6610298 6610298 G T GLDC Missense_Mutation p.L177I 0.18 tolerated(0.05) benign(0.21) TCGA-05-4427-01 9 77347647 77347647 C T TRPM6 Missense_Mutation p.G1928R 0.16 deleterious(0) probably_damaging(1) TCGA-05-4427-01 9 77436694 77436694 G A TRPM6 Silent p.L301L 0.35 TCGA-05-4427-01 9 79320124 79320124 C A PRUNE2 Missense_Mutation p.V2356L 0.18 tolerated(0.21) benign(0.035) TCGA-05-4427-01 9 79323268 79323268 C A PRUNE2 Missense_Mutation p.G1308W 0.35 deleterious(0.01) probably_damaging(0.988) TCGA-05-4427-01 9 79325448 79325448 G T PRUNE2 Missense_Mutation p.S581Y 0.24 tolerated(0.25) possibly_damaging(0.885) TCGA-05-4427-01 9 82319742 82319742 G T TLE4 Missense_Mutation p.K218N 0.29 deleterious(0.04) probably_damaging(0.999) TCGA-05-4427-01 9 8341911 8341911 T C PTPRD Missense_Mutation p.K1577E 0.05 tolerated(0.06) probably_damaging(0.984) TCGA-05-4427-01 9 8449761 8449761 G A PTPRD Missense_Mutation p.P1318S 0.17 deleterious(0) probably_damaging(0.995) TCGA-05-4427-01 9 84528438 84528438 A T SPATA31D5P RNA 0.15 TCGA-05-4427-01 9 84564728 84564728 G T RP11-383M4.6 Intron 0.12 TCGA-05-4427-01 9 84606380 84606380 G T SPATA31D1 Missense_Mutation p.G332V 0.11 deleterious(0.01) benign(0.247) TCGA-05-4427-01 9 8499800 8499800 G T PTPRD Silent p.V723V 0.16 TCGA-05-4427-01 9 8525032 8525032 G T PTPRD Missense_Mutation p.A191D 0.11 deleterious(0) probably_damaging(1) TCGA-05-4427-01 9 8633452 8633452 C G PTPRD Missense_Mutation p.E73Q 0.20 deleterious(0.02) probably_damaging(0.968) TCGA-05-4427-01 9 90263694 90263694 A T DAPK1 Splice_Site p.X444_splice 0.20 TCGA-05-4427-01 9 91653039 91653039 C T SHC3 Missense_Mutation p.A509T 0.05 deleterious(0) probably_damaging(1) TCGA-05-4427-01 9 93657852 93657852 G A SYK Silent p.L626L 0.13 TCGA-05-4427-01 9 95285118 95285118 G A ECM2 Silent p.L11L 0.06 TCGA-05-4427-01 9 97355924 97355924 C A FBP2 Missense_Mutation p.G29W 0.24 deleterious(0) probably_damaging(1) TCGA-05-4427-01 X 100402979 100402979 T A CENPI Missense_Mutation p.N641K 0.15 deleterious(0) probably_damaging(1) TCGA-05-4427-01 X 101092565 101092565 T A NXF5 Silent p.A327A 0.43 TCGA-05-4427-01 X 101576955 101576955 G T NXF2 Missense_Mutation p.S444I 0.33 deleterious(0.02) possibly_damaging(0.497) TCGA-05-4427-01 X 10174600 10174600 G T CLCN4 Missense_Mutation p.R253L 0.45 deleterious(0) possibly_damaging(0.902) TCGA-05-4427-01 X 102334758 102334758 G T NXF3 Missense_Mutation p.L365I 0.47 deleterious(0.01) probably_damaging(0.97) TCGA-05-4427-01 X 105075047 105075047 G T NRK Missense_Mutation p.D20Y 0.28 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-05-4427-01 X 10535287 10535287 G T MID1 Missense_Mutation p.R101S 0.14 deleterious(0.02) benign(0.011) TCGA-05-4427-01 X 106310851 106310851 T C RBM41 Missense_Mutation p.E383G 0.15 deleterious(0) benign(0.359) TCGA-05-4427-01 X 107418907 107418907 C A COL4A6 Missense_Mutation p.R937L 0.54 possibly_damaging(0.494) TCGA-05-4427-01 X 107911595 107911595 C A COL4A5 Silent p.G1217G 0.18 TCGA-05-4427-01 X 112058719 112058719 T A AMOT Missense_Mutation p.Y420F 0.11 unknown(0) TCGA-05-4427-01 X 114398286 114398286 A G LRCH2 Silent p.D472D 0.12 TCGA-05-4427-01 X 117033335 117033335 G T KLHL13 Missense_Mutation p.Q505K 0.12 tolerated(0.43) benign(0.043) TCGA-05-4427-01 X 117577637 117577637 G A WDR44 Nonsense_Mutation p.W833* 0.13 TCGA-05-4427-01 X 117712558 117712558 G C DOCK11 Missense_Mutation p.G487A 0.12 deleterious(0) benign(0.199) TCGA-05-4427-01 X 118147002 118147002 G T LONRF3 Silent p.G604G 0.15 TCGA-05-4427-01 X 118717129 118717129 A T UBE2A Missense_Mutation p.S124C 0.14 tolerated(0.09) possibly_damaging(0.854) TCGA-05-4427-01 X 119053906 119053906 C T AKAP14 Silent p.D158D 0.14 TCGA-05-4427-01 X 119678060 119678060 T A CUL4B Splice_Site p.X380_splice 0.39 TCGA-05-4427-01 X 119738031 119738031 C G MCTS1 5'Flank 0.24 TCGA-05-4427-01 X 123020298 123020298 G T XIAP Missense_Mutation p.M262I 0.12 deleterious(0) possibly_damaging(0.802) TCGA-05-4427-01 X 123040876 123040876 G T XIAP Nonsense_Mutation p.E447* 0.18 TCGA-05-4427-01 X 123514787 123514787 C T TENM1 Missense_Mutation p.G2600R 0.15 deleterious(0) possibly_damaging(0.774) TCGA-05-4427-01 X 123539001 123539001 G T TENM1 Missense_Mutation p.N1757K 0.51 deleterious(0.04) benign(0.066) TCGA-05-4427-01 X 123680902 123680902 G T TENM1 Missense_Mutation p.Q825K 0.18 deleterious(0.01) benign(0.165) TCGA-05-4427-01 X 124097465 124097465 C A TENM1 Silent p.L46L 0.10 TCGA-05-4427-01 X 125298568 125298568 C A DCAF12L2 Missense_Mutation p.G447V 0.14 deleterious(0) probably_damaging(1) TCGA-05-4427-01 X 125298619 125298619 G T DCAF12L2 Missense_Mutation p.A430E 0.14 deleterious(0) probably_damaging(0.923) TCGA-05-4427-01 X 125299290 125299290 G C DCAF12L2 Silent p.T206T 0.45 TCGA-05-4427-01 X 128722861 128722861 A T OCRL Splice_Site p.X781_splice 0.16 TCGA-05-4427-01 X 128886270 128886270 C G XPNPEP2 Missense_Mutation p.I322M 0.16 deleterious(0.01) possibly_damaging(0.595) TCGA-05-4427-01 X 128896679 128896679 A C XPNPEP2 Missense_Mutation p.Y558S 0.11 deleterious(0) probably_damaging(0.992) TCGA-05-4427-01 X 129629533 129629533 T C RP1-274L7.1 Intron 0.43 TCGA-05-4427-01 X 135431527 135431527 G A GPR112 Missense_Mutation p.A1888T 0.50 tolerated(0.17) benign(0.008) TCGA-05-4427-01 X 135432390 135432390 G C GPR112 Silent p.L2175L 0.44 TCGA-05-4427-01 X 135487954 135487954 C A GPR112 Missense_Mutation p.L2920M 0.13 deleterious(0.01) probably_damaging(0.96) TCGA-05-4427-01 X 136113727 136113727 G A GPR101 Missense_Mutation p.T36I 0.12 tolerated(0.52) benign(0.004) TCGA-05-4427-01 X 13636140 13636140 T A EGFL6 Missense_Mutation p.I357K 0.37 tolerated(0.05) benign(0.222) TCGA-05-4427-01 X 136652400 136652400 G T ZIC3 3'UTR 0.25 TCGA-05-4427-01 X 138667243 138667243 T G MCF2 Missense_Mutation p.E985D 0.05 tolerated(0.09) probably_damaging(0.992) TCGA-05-4427-01 X 140994911 140994911 C A MAGEC1 Missense_Mutation p.S574Y 0.17 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-05-4427-01 X 141291236 141291236 C A MAGEC2 Missense_Mutation p.V180L 0.13 tolerated(0.13) benign(0.288) TCGA-05-4427-01 X 142795257 142795257 G T SPANXN2 Missense_Mutation p.L141M 0.14 deleterious(0.05) unknown(0) TCGA-05-4427-01 X 142795437 142795437 C A SPANXN2 Missense_Mutation p.V81F 0.42 deleterious(0.02) probably_damaging(0.966) TCGA-05-4427-01 X 14599449 14599449 G A GLRA2 Missense_Mutation p.G139S 0.41 tolerated(0.34) probably_damaging(1) TCGA-05-4427-01 X 148690313 148690313 C A TMEM185A Splice_Site p.X141_splice 0.35 TCGA-05-4427-01 X 14883071 14883071 C G FANCB Missense_Mutation p.E188Q 0.20 tolerated(0.27) possibly_damaging(0.509) TCGA-05-4427-01 X 14932624 14932624 G T MOSPD2 Splice_Site p.X331_splice 0.13 TCGA-05-4427-01 X 150912360 150912360 T A CNGA2 Missense_Mutation p.L462Q 0.48 deleterious(0) probably_damaging(0.999) TCGA-05-4427-01 X 151820151 151820151 G T GABRQ Missense_Mutation p.S355I 0.12 deleterious(0.04) possibly_damaging(0.851) TCGA-05-4427-01 X 151896673 151896673 C A MAGEA12 3'Flank 0.14 TCGA-05-4427-01 X 152159024 152159024 A C PNMA5 Silent p.S373S 0.08 TCGA-05-4427-01 X 15276996 15276996 T A ASB9 Missense_Mutation p.I56F 0.42 deleterious(0.02) benign(0.272) TCGA-05-4427-01 X 153134360 153134360 C G L1CAM Missense_Mutation p.V439L 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-05-4427-01 X 153609423 153609423 C T EMD Missense_Mutation p.R211C 0.11 deleterious(0) benign(0.224) TCGA-05-4427-01 X 153628874 153628874 A G RPL10 Silent p.Q133Q 0.06 TCGA-05-4427-01 X 153694059 153694059 C A PLXNA3 Missense_Mutation p.P801T 0.11 tolerated(0.12) benign(0.124) TCGA-05-4427-01 X 154007498 154007498 T G MPP1 Missense_Mutation p.Q452P 0.15 tolerated(0.07) possibly_damaging(0.471) TCGA-05-4427-01 X 17705957 17705957 C A NHS Missense_Mutation p.P221T 0.13 deleterious(0) benign(0.341) TCGA-05-4427-01 X 17818874 17818874 G T RAI2 Missense_Mutation p.S419R 0.09 tolerated(0.31) unknown(0) TCGA-05-4427-01 X 18956834 18956834 G T PHKA2 Missense_Mutation p.L318I 0.15 deleterious(0) possibly_damaging(0.856) TCGA-05-4427-01 X 20173624 20173624 A T RPS6KA3 Silent p.A705A 0.19 TCGA-05-4427-01 X 21675317 21675317 A C KLHL34 Missense_Mutation p.L197R 0.29 deleterious(0) probably_damaging(0.996) TCGA-05-4427-01 X 27997759 27997759 T A DCAF8L1 Nonsense_Mutation p.R565* 0.10 TCGA-05-4427-01 X 30269744 30269744 C A MAGEB1 3'UTR 0.20 TCGA-05-4427-01 X 30322836 30322836 T A NR0B1 Nonsense_Mutation p.R425* 0.12 TCGA-05-4427-01 X 30577701 30577701 T A CXorf21 Nonsense_Mutation p.R258* 0.38 TCGA-05-4427-01 X 32235069 32235069 C A DMD Missense_Mutation p.E2134D 0.34 benign(0.388) TCGA-05-4427-01 X 3242456 3242456 G C MXRA5 Missense_Mutation p.Q424E 0.62 deleterious(0.04) benign(0.112) TCGA-05-4427-01 X 3261746 3261746 G T MXRA5 Missense_Mutation p.F43L 0.60 deleterious(0) probably_damaging(0.996) TCGA-05-4427-01 X 35966465 35966465 C A CXorf22 Silent p.P184P 0.14 TCGA-05-4427-01 X 37027370 37027370 G - FAM47C Frame_Shift_Del p.E297Sfs*528 0.36 TCGA-05-4427-01 X 37664301 37664301 G T CYBB Silent p.V398V 0.35 TCGA-05-4427-01 X 38226591 38226591 T A OTC Missense_Mutation p.L42H 0.18 deleterious(0) possibly_damaging(0.842) TCGA-05-4427-01 X 38229080 38229080 G T OTC Missense_Mutation p.G83V 0.42 deleterious(0) possibly_damaging(0.812) TCGA-05-4427-01 X 39934315 39934315 C A BCOR Missense_Mutation p.G95V 0.18 deleterious(0.01) probably_damaging(1) TCGA-05-4427-01 X 41075817 41075817 G A USP9X Missense_Mutation p.M1999I 0.51 deleterious(0.02) benign(0.01) TCGA-05-4427-01 X 48649678 48649678 C T GATA1 Silent p.T54T 0.19 TCGA-05-4427-01 X 52681930 52681930 C T SSX7 Missense_Mutation p.M58I 0.16 deleterious(0) probably_damaging(0.993) TCGA-05-4427-01 X 54783879 54783879 G A ITIH6 Silent p.T876T 0.07 TCGA-05-4427-01 X 55513992 55513992 G T USP51 Missense_Mutation p.L461I 0.08 tolerated(0.31) probably_damaging(0.973) TCGA-05-4427-01 X 55777611 55777611 G T RRAGB Missense_Mutation p.W226C 0.65 deleterious(0) probably_damaging(0.997) TCGA-05-4427-01 X 56291841 56291841 C A KLF8 Missense_Mutation p.L104I 0.36 tolerated(0.06) probably_damaging(0.994) TCGA-05-4427-01 X 57935045 57935045 C A ZXDA Missense_Mutation p.V604L 0.09 tolerated(0.09) probably_damaging(0.986) TCGA-05-4427-01 X 66941689 66941689 A C AR Missense_Mutation p.K778T 0.08 tolerated(0.19) probably_damaging(0.992) TCGA-05-4427-01 X 70280928 70280928 G A SNX12 Missense_Mutation p.H143Y 0.14 tolerated(0.79) probably_damaging(0.997) TCGA-05-4427-01 X 70321310 70321310 G T FOXO4 Silent p.T410T 0.13 TCGA-05-4427-01 X 70775075 70775075 G T OGT Missense_Mutation p.S255I 0.51 tolerated(0.06) probably_damaging(0.932) TCGA-05-4427-01 X 72433698 72433698 C A NAP1L2 Missense_Mutation p.A211S 0.14 tolerated(0.69) benign(0.142) TCGA-05-4427-01 X 73812090 73812090 C A RLIM Missense_Mutation p.V354F 0.17 tolerated(0.25) unknown(0) TCGA-05-4427-01 X 73961080 73961080 T A KIAA2022 Silent p.G1104G 0.51 TCGA-05-4427-01 X 73962119 73962119 T G KIAA2022 Missense_Mutation p.N758T 0.05 tolerated(0.55) benign(0.002) TCGA-05-4427-01 X 76875947 76875947 C T ATRX Missense_Mutation p.A1730T 0.19 probably_damaging(0.983) TCGA-05-4427-01 X 77302208 77302208 G T ATP7A 3'UTR 0.17 TCGA-05-4427-01 X 7811752 7811752 C A VCX Missense_Mutation p.Q106K 0.48 deleterious(0.04) unknown(0) TCGA-05-4427-01 X 8761700 8761700 T C FAM9A Missense_Mutation p.K310R 0.14 deleterious_low_confidence(0) unknown(0) TCGA-05-4427-01 X 88008723 88008723 A G CPXCR1 Missense_Mutation p.H103R 0.15 tolerated(0.54) benign(0.002) TCGA-05-4427-01 X 91132636 91132636 T A PCDH11X Missense_Mutation p.F466Y 0.12 deleterious(0) probably_damaging(0.998) TCGA-05-4427-01 X 99944921 99944921 C A SYTL4 Missense_Mutation p.D282Y 0.20 tolerated(1) probably_damaging(0.959) TCGA-05-4430-01 10 118434844 118434844 C A HSPA12A Missense_Mutation p.Q492H 0.19 tolerated(1) benign(0.006) TCGA-05-4430-01 10 17024512 17024512 C A CUBN Missense_Mutation p.D1556Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-05-4430-01 10 49687630 49687630 C A ARHGAP22 Splice_Site p.X167_splice 0.19 TCGA-05-4430-01 10 51464739 51464739 C G AGAP7 Missense_Mutation p.A573P 0.09 tolerated(0.09) benign(0.205) TCGA-05-4430-01 10 61112108 61112108 G C FAM13C Silent p.P82P 0.11 TCGA-05-4430-01 10 70404986 70404986 T G TET1 Missense_Mutation p.S834A 0.07 tolerated(0.13) benign(0.035) TCGA-05-4430-01 10 71265915 71265915 C A TSPAN15 Silent p.G218G 0.07 TCGA-05-4430-01 10 75532609 75532609 G A FUT11 Missense_Mutation p.R173H 0.28 deleterious(0) probably_damaging(0.992) TCGA-05-4430-01 10 76781967 76781967 A T KAT6B Missense_Mutation p.Q1117L 0.15 possibly_damaging(0.766) TCGA-05-4430-01 10 85973997 85973997 C A CDHR1 Missense_Mutation p.L734M 0.13 tolerated_low_confidence(0.46) benign(0.025) TCGA-05-4430-01 10 87373323 87373323 G T GRID1 Silent p.T814T 0.17 TCGA-05-4430-01 10 93749274 93749274 C G BTAF1 Missense_Mutation p.P931A 0.06 tolerated(0.16) benign(0.026) TCGA-05-4430-01 10 96534881 96534881 G T CYP2C19 Nonsense_Mutation p.G79* 0.17 TCGA-05-4430-01 11 124180365 124180365 G T OR8D1 Missense_Mutation p.Q100K 0.12 deleterious(0) probably_damaging(0.991) TCGA-05-4430-01 11 129801996 129801996 C A PRDM10 Splice_Site p.X429_splice 0.15 TCGA-05-4430-01 11 17419905 17419905 C G ABCC8 Missense_Mutation p.R1245T 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-05-4430-01 11 4510393 4510393 G T OR52K1 Missense_Mutation p.W88L 0.11 deleterious(0.03) benign(0.317) TCGA-05-4430-01 11 4843600 4843600 A T OR51F2 Missense_Mutation p.N329Y 0.15 deleterious(0.02) possibly_damaging(0.703) TCGA-05-4430-01 11 5020470 5020470 G T OR51L1 Silent p.V86V 0.04 TCGA-05-4430-01 11 5153561 5153561 C A OR52A5 Missense_Mutation p.W104C 0.18 deleterious(0.02) benign(0.021) TCGA-05-4430-01 11 5221508 5221508 A G OR51V1 Silent p.Y141Y 0.11 TCGA-05-4430-01 11 5345297 5345297 A T OR51B2 Silent p.P77P 0.27 TCGA-05-4430-01 11 55322475 55322475 G C OR4C15 Missense_Mutation p.M231I 0.20 tolerated_low_confidence(0.4) benign(0.004) TCGA-05-4430-01 11 55860901 55860901 T C OR8I2 Silent p.L40L 0.13 TCGA-05-4430-01 11 59132051 59132051 G T OR5AN1 Silent p.L40L 0.06 TCGA-05-4430-01 11 59245669 59245669 A G OR4D10 Missense_Mutation p.Y256C 0.11 deleterious(0.03) probably_damaging(0.992) TCGA-05-4430-01 11 62290909 62290909 C A AHNAK Missense_Mutation p.K3660N 0.10 probably_damaging(0.999) TCGA-05-4430-01 11 69062910 69062910 C T MYEOV Missense_Mutation p.S30F 0.18 deleterious_low_confidence(0.01) benign(0.1) TCGA-05-4430-01 11 8118969 8118969 G T TUB Missense_Mutation p.K349N 0.12 deleterious(0) probably_damaging(0.997) TCGA-05-4430-01 11 92525961 92525961 G T FAT3 Missense_Mutation p.R1547I 0.05 probably_damaging(0.985) TCGA-05-4430-01 11 92535011 92535011 C A FAT3 Silent p.A2944A 0.09 TCGA-05-4430-01 12 110348913 110348913 G T TCHP Nonsense_Mutation p.E309* 0.18 TCGA-05-4430-01 12 121600296 121600296 C G P2RX7 Missense_Mutation p.P169R 0.07 deleterious(0) probably_damaging(1) TCGA-05-4430-01 12 1299084 1299084 C A ERC1 Missense_Mutation p.H739Q 0.16 tolerated(0.66) benign(0.001) TCGA-05-4430-01 12 130912844 130912844 G T RIMBP2 Missense_Mutation p.S747R 0.12 deleterious(0) probably_damaging(0.999) TCGA-05-4430-01 12 29911688 29911688 G T TMTC1 Missense_Mutation p.A168E 0.15 deleterious(0) probably_damaging(0.998) TCGA-05-4430-01 12 45269392 45269392 C A NELL2 Intron 0.14 TCGA-05-4430-01 12 49435239 49435239 C T KMT2D Missense_Mutation p.R2105H 0.07 probably_damaging(0.967) TCGA-05-4430-01 12 54975870 54975870 C A PPP1R1A Missense_Mutation p.G98V 0.22 deleterious(0) probably_damaging(0.991) TCGA-05-4430-01 12 56510423 56510423 G C RPL41 5'UTR 0.41 TCGA-05-4430-01 12 56629470 56629470 C T SLC39A5 Nonsense_Mutation p.R311* 0.07 TCGA-05-4430-01 12 5687595 5687595 G T ANO2 Missense_Mutation p.L775I 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-05-4430-01 12 80771682 80771682 A G OTOGL Missense_Mutation p.N2297D 0.31 deleterious(0) probably_damaging(0.973) TCGA-05-4430-01 12 83358817 83358817 A T TMTC2 Missense_Mutation p.Q538L 0.29 deleterious(0) probably_damaging(0.983) TCGA-05-4430-01 13 28589815 28589815 C A FLT3 Missense_Mutation p.M855I 0.14 deleterious(0) probably_damaging(1) TCGA-05-4430-01 14 105201358 105201358 G T ADSSL1 Missense_Mutation p.G108V 0.18 deleterious(0) probably_damaging(1) TCGA-05-4430-01 14 19553724 19553724 G T POTEG Missense_Mutation p.C103F 0.06 deleterious_low_confidence(0.03) benign(0.011) TCGA-05-4430-01 14 23842381 23842381 A T IL25 Silent p.L18L 0.26 TCGA-05-4430-01 14 61519223 61519223 G C SLC38A6 Intron 0.27 TCGA-05-4430-01 14 62462844 62462844 C A SYT16 Missense_Mutation p.S36Y 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-05-4430-01 14 93649642 93649642 C G MOAP1 Missense_Mutation p.D316H 0.26 tolerated(0.1) possibly_damaging(0.504) TCGA-05-4430-01 15 25415785 25415785 G C SNORD115-3 5'Flank 0.09 TCGA-05-4430-01 15 31360169 31360169 G T TRPM1 Missense_Mutation p.P153T 0.09 deleterious(0.01) possibly_damaging(0.611) TCGA-05-4430-01 15 34640216 34640216 C T NUTM1 Silent p.A21A 0.09 TCGA-05-4430-01 15 40912855 40912855 T C CASC5 Silent p.H157H 0.11 TCGA-05-4430-01 15 44119233 44119233 G T WDR76 Translation_Start_Site p.M1? 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.878) TCGA-05-4430-01 15 75013022 75013022 G - CYP1A1 Frame_Shift_Del p.F450Lfs*37 0.12 TCGA-05-4430-01 15 75119191 75119191 G A CPLX3 Silent p.K49K 0.11 TCGA-05-4430-01 15 75134424 75134424 T A ULK3 Missense_Mutation p.Q119L 0.08 deleterious(0) probably_damaging(0.978) TCGA-05-4430-01 15 78211193 78211193 G T RP11-114H24.7 Intron 0.09 TCGA-05-4430-01 16 14989555 14989555 C A NOMO1 3'UTR 0.10 TCGA-05-4430-01 16 15839064 15839064 G T MYH11 Silent p.T821T 0.15 TCGA-05-4430-01 16 23080502 23080502 C T USP31 Missense_Mutation p.R975H 0.10 tolerated_low_confidence(0.16) benign(0.001) TCGA-05-4430-01 16 31391640 31391640 C G ITGAX Missense_Mutation p.S1038R 0.08 deleterious(0.03) benign(0.212) TCGA-05-4430-01 16 3490906 3490906 C G ZNF597 Missense_Mutation p.V21L 0.13 deleterious(0.01) possibly_damaging(0.802) TCGA-05-4430-01 16 51173271 51173271 G A SALL1 Silent p.S954S 0.13 TCGA-05-4430-01 16 55728015 55728015 A T SLC6A2 Missense_Mutation p.N338Y 0.16 deleterious(0) probably_damaging(0.992) TCGA-05-4430-01 16 56377812 56377812 G T GNAO1 Missense_Mutation p.V339L 0.11 deleterious(0) probably_damaging(0.992) TCGA-05-4430-01 16 68894053 68894053 C T TANGO6 Missense_Mutation p.P121S 0.14 tolerated(0.08) benign(0.027) TCGA-05-4430-01 16 71601980 71601980 G A TAT 3'UTR 0.08 TCGA-05-4430-01 16 76461392 76461392 G T CNTNAP4 Missense_Mutation p.R120I 0.18 deleterious(0) probably_damaging(0.913) TCGA-05-4430-01 16 77317955 77317955 G T ADAMTS18 Nonsense_Mutation p.C1188* 0.06 TCGA-05-4430-01 16 90038268 90038268 C G CENPBD1 Silent p.A21A 0.18 TCGA-05-4430-01 16 9857275 9857275 G T GRIN2A Missense_Mutation p.R1376S 0.15 tolerated(0.16) possibly_damaging(0.599) TCGA-05-4430-01 17 10298575 10298575 C G MYH8 Missense_Mutation p.D1613H 0.10 deleterious(0.01) probably_damaging(0.918) TCGA-05-4430-01 17 10301785 10301785 C A MYH8 Missense_Mutation p.R1385L 0.18 deleterious(0.01) probably_damaging(0.992) TCGA-05-4430-01 17 11757701 11757701 A T DNAH9 Missense_Mutation p.T3297S 0.17 benign(0.002) TCGA-05-4430-01 17 19285382 19285382 C G MAPK7 Missense_Mutation p.P589R 0.31 tolerated(0.46) unknown(0) TCGA-05-4430-01 17 27050936 27050936 T C RPL23A 3'UTR 0.22 TCGA-05-4430-01 17 28754530 28754530 C T CPD Silent p.S657S 0.10 TCGA-05-4430-01 17 31075963 31075963 C A MYO1D Missense_Mutation p.G510V 0.13 deleterious(0) probably_damaging(0.999) TCGA-05-4430-01 17 31075976 31075976 G A MYO1D Nonsense_Mutation p.R506* 0.13 TCGA-05-4430-01 17 40958759 40958759 C T CNTD1 Silent p.V216V 0.09 TCGA-05-4430-01 17 41477386 41477386 G T ARL4D Missense_Mutation p.G96C 0.16 deleterious(0) probably_damaging(1) TCGA-05-4430-01 17 43332762 43332762 G A SPATA32 Missense_Mutation p.H263Y 0.07 deleterious(0) benign(0.192) TCGA-05-4430-01 17 47656499 47656499 G T NXPH3 Missense_Mutation p.C199F 0.13 deleterious(0) probably_damaging(1) TCGA-05-4430-01 17 4804399 4804399 C A CHRNE Missense_Mutation p.V230F 0.12 deleterious(0) probably_damaging(0.936) TCGA-05-4430-01 17 48462617 48462617 T C LRRC59 Missense_Mutation p.K180E 0.13 tolerated(0.23) benign(0.194) TCGA-05-4430-01 17 49710858 49710858 C A CA10 Missense_Mutation p.A315S 0.06 tolerated(0.31) benign(0.318) TCGA-05-4430-01 17 61498459 61498459 C T TANC2 Nonsense_Mutation p.R1706* 0.06 TCGA-05-4430-01 17 66986013 66986013 C A ABCA9 Missense_Mutation p.C1299F 0.10 tolerated(0.06) benign(0.111) TCGA-05-4430-01 17 67243691 67243691 C T ABCA5 Missense_Mutation p.R1639K 0.08 deleterious(0.03) possibly_damaging(0.558) TCGA-05-4430-01 17 67309240 67309240 T C ABCA5 Silent p.L100L 0.06 TCGA-05-4430-01 17 7577535 7577535 C A TP53 Missense_Mutation p.R249M 0.24 deleterious(0) probably_damaging(0.993) TCGA-05-4430-01 17 79813036 79813036 C A P4HB Silent p.G202G 0.14 TCGA-05-4430-01 18 10680359 10680359 G T PIEZO2 Missense_Mutation p.Q2484K 0.06 deleterious(0.01) benign(0.22) TCGA-05-4430-01 18 13095519 13095519 G T CEP192 Missense_Mutation p.G2091V 0.28 tolerated(0.21) probably_damaging(0.968) TCGA-05-4430-01 18 29054280 29054280 G T DSG3 Missense_Mutation p.M766I 0.16 tolerated(0.18) benign(0.009) TCGA-05-4430-01 18 46783444 46783444 C T DYM Missense_Mutation p.A466T 0.06 deleterious(0.04) possibly_damaging(0.896) TCGA-05-4430-01 18 48325705 48325705 G A MRO 3'UTR 0.19 TCGA-05-4430-01 18 72998565 72998565 C G TSHZ1 Silent p.G356G 0.10 TCGA-05-4430-01 19 13223573 13223573 C A TRMT1 Silent p.T272T 0.12 TCGA-05-4430-01 19 17599848 17599848 C T SLC27A1 Silent p.I306I 0.14 TCGA-05-4430-01 19 22847799 22847799 A G ZNF492 Missense_Mutation p.H443R 0.14 deleterious(0) possibly_damaging(0.51) TCGA-05-4430-01 19 2989238 2989238 G T TLE6 Missense_Mutation p.R307I 0.08 deleterious(0.01) benign(0.367) TCGA-05-4430-01 19 313534 313534 C G MIER2 Silent p.G255G 0.07 TCGA-05-4430-01 19 31768256 31768256 G T TSHZ3 Missense_Mutation p.P815T 0.22 tolerated(0.18) benign(0.001) TCGA-05-4430-01 19 34859562 34859562 G T GPI Missense_Mutation p.M158I 0.14 deleterious_low_confidence(0.04) benign(0.02) TCGA-05-4430-01 19 42480646 42480646 C T ATP1A3 Silent p.L685L 0.17 TCGA-05-4430-01 19 43683099 43683099 G T PSG5 Intron 0.15 TCGA-05-4430-01 19 44471333 44471333 G T ZNF221 Missense_Mutation p.R560L 0.20 deleterious(0) possibly_damaging(0.695) TCGA-05-4430-01 19 50957526 50957526 C - MYBPC2 Frame_Shift_Del p.P639Qfs*37 0.18 TCGA-05-4430-01 19 51220030 51220030 A G SHANK1 Silent p.G49G 0.29 TCGA-05-4430-01 19 53473734 53473734 G C ZNF702P RNA 0.10 TCGA-05-4430-01 19 54396639 54396639 G T PRKCG Missense_Mutation p.L311F 0.14 tolerated(0.33) benign(0.014) TCGA-05-4430-01 19 54760185 54760185 G T LILRB5 Missense_Mutation p.L126I 0.21 deleterious(0) probably_damaging(0.979) TCGA-05-4430-01 19 54801976 54801976 G A LILRA3 Silent p.N404N 0.11 TCGA-05-4430-01 19 55501959 55501959 C A NLRP2 Missense_Mutation p.A876D 0.08 deleterious(0) probably_damaging(0.999) TCGA-05-4430-01 19 7684528 7684528 G T XAB2 Silent p.R838R 0.10 TCGA-05-4430-01 19 9064463 9064463 C T MUC16 Silent p.E7661E 0.09 TCGA-05-4430-01 19 9073402 9073402 G T MUC16 Missense_Mutation p.Q4682K 0.15 unknown(0) TCGA-05-4430-01 1 107937773 107937773 C T NTNG1 Intron 0.14 TCGA-05-4430-01 1 119576771 119576771 T A WARS2 Missense_Mutation p.Q194L 0.11 deleterious(0.02) benign(0.122) TCGA-05-4430-01 1 152326733 152326733 T C FLG2 Missense_Mutation p.T1177A 0.11 unknown(0) TCGA-05-4430-01 1 158261156 158261156 G A CD1C Silent p.E98E 0.22 TCGA-05-4430-01 1 158325701 158325701 C A CD1E Missense_Mutation p.P237Q 0.22 deleterious(0) probably_damaging(1) TCGA-05-4430-01 1 158450421 158450421 G T OR10R2 Nonsense_Mutation p.E252* 0.17 TCGA-05-4430-01 1 163138072 163138072 G T RGS5 Missense_Mutation p.P44Q 0.16 tolerated(0.36) benign(0.013) TCGA-05-4430-01 1 163138073 163138073 G T RGS5 Missense_Mutation p.P44T 0.17 tolerated(0.5) benign(0.005) TCGA-05-4430-01 1 166905836 166905836 G T ILDR2 Missense_Mutation p.P232H 0.13 deleterious(0) probably_damaging(1) TCGA-05-4430-01 1 167025041 167025041 G T GPA33 Nonsense_Mutation p.S206* 0.20 TCGA-05-4430-01 1 176668684 176668684 G T PAPPA2 Missense_Mutation p.L1065F 0.23 tolerated(0.7) possibly_damaging(0.653) TCGA-05-4430-01 1 197898182 197898182 G T LHX9 Missense_Mutation p.Q329H 0.28 tolerated(0.05) benign(0.433) TCGA-05-4430-01 1 216019167 216019167 C A USH2A Silent p.G3018G 0.14 TCGA-05-4430-01 1 222717100 222717100 C G HHIPL2 Silent p.L251L 0.16 TCGA-05-4430-01 1 226836376 226836376 C T ITPKB Missense_Mutation p.A677T 0.07 tolerated(0.07) probably_damaging(0.989) TCGA-05-4430-01 1 228033666 228033666 G C PRSS38 Silent p.G246G 0.20 TCGA-05-4430-01 1 23648100 23648100 T A HNRNPR Silent p.A244A 0.18 TCGA-05-4430-01 1 23743829 23743829 T A TCEA3 Missense_Mutation p.K98M 0.07 deleterious(0.01) possibly_damaging(0.711) TCGA-05-4430-01 1 237948095 237948095 G T RYR2 Missense_Mutation p.E4361D 0.16 possibly_damaging(0.675) TCGA-05-4430-01 1 24201701 24201701 C T CNR2 Missense_Mutation p.R136H 0.17 tolerated(1) benign(0.002) TCGA-05-4430-01 1 247921322 247921322 G A OR1C1 Silent p.P129P 0.15 TCGA-05-4430-01 1 248309050 248309050 A T OR2M5 Missense_Mutation p.I201F 0.03 tolerated(0.09) benign(0.049) TCGA-05-4430-01 1 248458642 248458642 G C OR2T12 Missense_Mutation p.A80G 0.15 deleterious(0) possibly_damaging(0.815) TCGA-05-4430-01 1 248616687 248616687 G A OR2T2 Missense_Mutation p.E197K 0.17 tolerated(0.1) benign(0.063) TCGA-05-4430-01 1 248685264 248685264 G T OR2G6 Missense_Mutation p.G106V 0.05 tolerated(0.09) benign(0.206) TCGA-05-4430-01 1 249110823 249110823 C A SH3BP5L Silent p.S95S 0.05 TCGA-05-4430-01 1 26566285 26566285 A T CEP85 Missense_Mutation p.Q4L 0.17 tolerated_low_confidence(1) benign(0.01) TCGA-05-4430-01 1 27627736 27627736 G T WDTC1 Missense_Mutation p.A417S 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-05-4430-01 1 46746874 46746874 G T LRRC41 Missense_Mutation p.P560Q 0.10 tolerated(0.32) possibly_damaging(0.904) TCGA-05-4430-01 1 75708683 75708683 T A SLC44A5 Missense_Mutation p.K120M 0.20 deleterious(0) probably_damaging(0.95) TCGA-05-4430-01 20 16025241 16025241 G T MACROD2 Intron 0.33 TCGA-05-4430-01 20 16360585 16360585 G T KIF16B Missense_Mutation p.Q688K 0.09 tolerated(0.1) possibly_damaging(0.64) TCGA-05-4430-01 20 1896081 1896081 G A SIRPA Missense_Mutation p.G139D 0.15 deleterious(0) probably_damaging(1) TCGA-05-4430-01 20 23016906 23016906 G T SSTR4 Silent p.L262L 0.31 TCGA-05-4430-01 20 2411621 2411621 T A TGM6 Missense_Mutation p.C639S 0.30 deleterious(0.01) possibly_damaging(0.861) TCGA-05-4430-01 20 2779518 2779518 C A CPXM1 Missense_Mutation p.R65L 0.30 deleterious_low_confidence(0.01) benign(0.131) TCGA-05-4430-01 20 31973519 31973519 C A CDK5RAP1 Silent p.R271R 0.14 TCGA-05-4430-01 20 55100858 55100882 AGGAGCAGAGTCCTCCTGGCCTTCG - FAM209A Splice_Site p.X84_splice 0.10 TCGA-05-4430-01 20 55108453 55108461 CCTTTATGT - FAM209B In_Frame_Del p.A19_F22delinsV 0.11 TCGA-05-4430-01 20 57766620 57766620 G T ZNF831 Missense_Mutation p.K182N 0.38 deleterious(0) probably_damaging(0.999) TCGA-05-4430-01 21 43414063 43414063 A C ZBTB21 Missense_Mutation p.L48V 0.12 deleterious(0) probably_damaging(0.999) TCGA-05-4430-01 22 18020342 18020342 C T CECR2 Silent p.P558P 0.13 TCGA-05-4430-01 22 19365417 19365417 C G HIRA Missense_Mutation p.A530P 0.05 tolerated(0.25) benign(0.002) TCGA-05-4430-01 22 26868863 26868863 G A HPS4 Missense_Mutation p.R107W 0.07 deleterious(0) probably_damaging(0.921) TCGA-05-4430-01 22 31032843 31032843 G C SLC35E4 Missense_Mutation p.A136P 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-05-4430-01 22 40859299 40859299 C A MKL1 Intron 0.06 TCGA-05-4430-01 22 43460246 43460246 G T TTLL1 Missense_Mutation p.D196E 0.08 deleterious(0) probably_damaging(0.988) TCGA-05-4430-01 2 127453785 127453785 C A GYPC 3'UTR 0.23 TCGA-05-4430-01 2 130786009 130786009 C A FAR2P1 RNA 0.21 TCGA-05-4430-01 2 140992421 140992421 G T LRP1B Missense_Mutation p.F4531L 0.23 benign(0) TCGA-05-4430-01 2 152527689 152527689 T C NEB Missense_Mutation p.I1452V 0.20 benign(0.105) TCGA-05-4430-01 2 162274750 162274750 G A TBR1 Missense_Mutation p.G296R 0.19 deleterious(0) probably_damaging(1) TCGA-05-4430-01 2 163374483 163374483 T C KCNH7 Missense_Mutation p.K217E 0.12 tolerated(0.66) benign(0.002) TCGA-05-4430-01 2 168102744 168102744 C A XIRP2 Silent p.S1614S 0.12 TCGA-05-4430-01 2 179397726 179397726 G T TTN Missense_Mutation p.P34539H 0.17 TCGA-05-4430-01 2 179412988 179412988 A T TTN Missense_Mutation p.V31122D 0.06 TCGA-05-4430-01 2 182359483 182359483 G C ITGA4 Missense_Mutation p.S428T 0.21 tolerated(0.14) possibly_damaging(0.574) TCGA-05-4430-01 2 189868184 189868184 T C COL3A1 Silent p.G867G 0.16 TCGA-05-4430-01 2 206869874 206869874 T A INO80D Missense_Mutation p.T768S 0.07 tolerated_low_confidence(0.72) benign(0.016) TCGA-05-4430-01 2 21235206 21235206 C A APOB Missense_Mutation p.G1512C 0.13 probably_damaging(0.962) TCGA-05-4430-01 2 215279062 215279062 C A VWC2L Silent p.R49R 0.18 TCGA-05-4430-01 2 219674425 219674425 G T CYP27A1 Silent p.R127R 0.10 TCGA-05-4430-01 2 241078631 241078631 G A OTOS Silent p.L76L 0.21 TCGA-05-4430-01 2 242757727 242757727 C A NEU4 Missense_Mutation p.P283T 0.23 tolerated(0.26) benign(0.01) TCGA-05-4430-01 2 242814448 242814448 C A CXXC11 Missense_Mutation p.F247L 0.19 tolerated(0.59) benign(0) TCGA-05-4430-01 2 25967101 25967101 C T ASXL2 Missense_Mutation p.G702E 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.792) TCGA-05-4430-01 2 31806000 31806000 C A SRD5A2 RNA 0.18 TCGA-05-4430-01 2 33747045 33747045 G A RASGRP3 Missense_Mutation p.R131K 0.10 tolerated(1) benign(0.003) TCGA-05-4430-01 2 44204192 44204192 C T LRPPRC Splice_Site p.X198_splice 0.10 TCGA-05-4430-01 2 64779295 64779295 G T AFTPH Missense_Mutation p.E229D 0.28 tolerated(0.15) benign(0.106) TCGA-05-4430-01 2 74688860 74688860 C T MOGS Missense_Mutation p.V686I 0.12 deleterious(0.04) probably_damaging(0.951) TCGA-05-4430-01 2 80530299 80530299 G T LRRTM1 Missense_Mutation p.L216I 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-05-4430-01 3 10381973 10381973 A T ATP2B2 Missense_Mutation p.W1064R 0.20 deleterious(0) probably_damaging(0.999) TCGA-05-4430-01 3 112357838 112357838 G T CCDC80 Missense_Mutation p.S305R 0.17 tolerated(0.41) benign(0.029) TCGA-05-4430-01 3 113890615 113890615 G T DRD3 Missense_Mutation p.D75E 0.09 deleterious(0) probably_damaging(0.999) TCGA-05-4430-01 3 113955452 113955452 C T ZNF80 Missense_Mutation p.G157E 0.07 deleterious(0) probably_damaging(0.948) TCGA-05-4430-01 3 119133448 119133448 A T ARHGAP31 Missense_Mutation p.D891V 0.18 deleterious(0) probably_damaging(0.999) TCGA-05-4430-01 3 150881712 150881712 G T MED12L Silent p.V380V 0.08 TCGA-05-4430-01 3 155200774 155200774 T A PLCH1 Missense_Mutation p.N1022I 0.08 deleterious_low_confidence(0.03) benign(0.24) TCGA-05-4430-01 3 16254176 16254176 C - GALNT15 Frame_Shift_Del p.L434* 0.21 TCGA-05-4430-01 3 194062704 194062704 A T CPN2 Missense_Mutation p.L243Q 0.13 deleterious(0) probably_damaging(0.973) TCGA-05-4430-01 3 20216127 20216127 T C SGOL1 Missense_Mutation p.N299S 0.07 tolerated(0.28) benign(0.018) TCGA-05-4430-01 3 3136995 3136995 A G IL5RA Silent p.N281N 0.20 TCGA-05-4430-01 3 36779774 36779774 C T DCLK3 Missense_Mutation p.G126E 0.12 tolerated(0.6) benign(0.027) TCGA-05-4430-01 3 41265541 41265541 T G CTNNB1 5'UTR 0.10 TCGA-05-4430-01 3 46621261 46621261 G T TDGF1 Missense_Mutation p.G86W 0.11 deleterious(0) probably_damaging(0.999) TCGA-05-4430-01 3 62478119 62478119 G T CADPS Silent p.A910A 0.05 TCGA-05-4430-01 3 66413339 66413339 G A SLC25A26 Missense_Mutation p.C185Y 0.24 deleterious(0) possibly_damaging(0.848) TCGA-05-4430-01 3 74315728 74315728 G T CNTN3 Missense_Mutation p.L964M 0.10 deleterious(0) probably_damaging(0.999) TCGA-05-4430-01 3 8590464 8590464 G A LMCD1 Missense_Mutation p.A200T 0.15 tolerated(0.07) probably_damaging(0.972) TCGA-05-4430-01 3 93605343 93605343 G A PROS1 Missense_Mutation p.S387F 0.18 deleterious(0.02) probably_damaging(0.992) TCGA-05-4430-01 4 107249400 107249400 G C AIMP1 Missense_Mutation p.G155R 0.19 tolerated(0.43) benign(0.209) TCGA-05-4430-01 4 113540185 113540185 A T C4orf21 Missense_Mutation p.I338K 0.09 tolerated(0.11) benign(0.035) TCGA-05-4430-01 4 114278877 114278877 A G ANK2 Missense_Mutation p.I3035V 0.11 probably_damaging(0.997) TCGA-05-4430-01 4 114279344 114279344 A T ANK2 Silent p.V3190V 0.13 TCGA-05-4430-01 4 126411519 126411519 C A FAT4 Silent p.T4514T 0.17 TCGA-05-4430-01 4 173269702 173269702 C T GALNTL6 Silent p.L139L 0.17 TCGA-05-4430-01 4 41748277 41748277 C A PHOX2B Silent p.A164A 0.14 TCGA-05-4430-01 4 53468216 53468216 T A USP46 Missense_Mutation p.R243W 0.11 deleterious(0) possibly_damaging(0.823) TCGA-05-4430-01 4 70361472 70361472 C A UGT2B4 Missense_Mutation p.W36C 0.06 deleterious(0) probably_damaging(0.999) TCGA-05-4430-01 4 83905676 83905676 C A LIN54 Missense_Mutation p.V108L 0.06 tolerated_low_confidence(0.19) benign(0.076) TCGA-05-4430-01 4 88535090 88535090 C A DSPP Missense_Mutation p.P426T 0.22 probably_damaging(0.961) TCGA-05-4430-01 4 98893504 98893504 C G STPG2 Missense_Mutation p.G287A 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-05-4430-01 5 110407675 110407675 C A TSLP Nonsense_Mutation p.Y29* 0.12 TCGA-05-4430-01 5 132232314 132232314 C T AFF4 Missense_Mutation p.E670K 0.11 tolerated(0.34) benign(0.116) TCGA-05-4430-01 5 145838723 145838723 G T TCERG1 Missense_Mutation p.A239S 0.20 tolerated(0.93) unknown(0) TCGA-05-4430-01 5 161580458 161580458 C G GABRG2 3'UTR 0.11 TCGA-05-4430-01 5 168180932 168180932 G A SLIT3 Missense_Mutation p.T589I 0.25 deleterious(0) probably_damaging(1) TCGA-05-4430-01 5 169533452 169533452 A T FOXI1 Missense_Mutation p.K164M 0.21 deleterious(0) probably_damaging(1) TCGA-05-4430-01 5 176721186 176721186 T G NSD1 Missense_Mutation p.C2273G 0.12 tolerated_low_confidence(0.05) benign(0.003) TCGA-05-4430-01 5 177171969 177171969 C A FAM153A Splice_Site p.X10_splice 0.09 TCGA-05-4430-01 5 179302952 179302952 A T TBC1D9B Missense_Mutation p.M623K 0.22 deleterious(0) possibly_damaging(0.904) TCGA-05-4430-01 5 33662100 33662100 A T ADAMTS12 Missense_Mutation p.F321I 0.34 deleterious(0) probably_damaging(1) TCGA-05-4430-01 5 72863231 72863231 A T UTP15 Missense_Mutation p.Q21L 0.19 tolerated(0.15) benign(0.347) TCGA-05-4430-01 5 7866922 7866922 G T FASTKD3 Silent p.A425A 0.07 TCGA-05-4430-01 5 79026350 79026350 G T CMYA5 Missense_Mutation p.V588F 0.14 benign(0.021) TCGA-05-4430-01 5 95761538 95761538 G A PCSK1 Nonsense_Mutation p.Q128* 0.12 TCGA-05-4430-01 6 123892215 123892215 C T TRDN Missense_Mutation p.G29R 0.09 deleterious_low_confidence(0.03) unknown(0) TCGA-05-4430-01 6 169626329 169626329 A T THBS2 Silent p.G828G 0.17 TCGA-05-4430-01 6 18399839 18399839 C - RNF144B Frame_Shift_Del p.L27Sfs*16 0.15 TCGA-05-4430-01 6 22569972 22569972 G C HDGFL1 Silent p.L56L 0.11 TCGA-05-4430-01 6 25799037 25799037 T C SLC17A1 Silent p.K460K 0.12 TCGA-05-4430-01 6 28227314 28227314 G T NKAPL Missense_Mutation p.W55C 0.14 tolerated(0.13) unknown(0) TCGA-05-4430-01 6 28294239 28294239 C A ZSCAN31 Missense_Mutation p.G309C 0.15 deleterious(0.01) probably_damaging(0.924) TCGA-05-4430-01 6 29079836 29079836 C A OR2J3 Missense_Mutation p.H57N 0.14 tolerated(0.08) benign(0.012) TCGA-05-4430-01 6 29640787 29640787 C T ZFP57 Silent p.Q367Q 0.17 TCGA-05-4430-01 6 31777930 31777930 G A HSPA1L Missense_Mutation p.P607L 0.05 deleterious_low_confidence(0) probably_damaging(1) TCGA-05-4430-01 6 43221047 43221047 G T TTBK1 Missense_Mutation p.R92M 0.06 probably_damaging(0.994) TCGA-05-4430-01 6 46658183 46658183 C T TDRD6 Missense_Mutation p.T773I 0.53 deleterious(0.02) possibly_damaging(0.708) TCGA-05-4430-01 6 49754747 49754747 C T PGK2 Missense_Mutation p.D52N 0.29 tolerated(0.08) benign(0.044) TCGA-05-4430-01 6 55214930 55214930 A C GFRAL Silent p.T119T 0.16 TCGA-05-4430-01 6 56480626 56480626 T C DST Intron 0.10 TCGA-05-4430-01 6 74078997 74078997 C A OOEP Missense_Mutation p.R101L 0.17 tolerated(0.65) benign(0.018) TCGA-05-4430-01 7 101265451 101265451 C A MYL10 Nonsense_Mutation p.E127* 0.18 TCGA-05-4430-01 7 121651440 121651440 C A PTPRZ1 Silent p.I780I 0.06 TCGA-05-4430-01 7 142498843 142498843 C G TRBC2 Missense_Mutation p.H40Q 0.09 deleterious(0) probably_damaging(0.985) TCGA-05-4430-01 7 143013364 143013364 C A CLCN1 Missense_Mutation p.P20H 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-05-4430-01 7 150732736 150732736 G C ABCB8 Silent p.T278T 0.11 TCGA-05-4430-01 7 150915920 150915920 C A ABCF2 Missense_Mutation p.A353S 0.15 deleterious(0.04) possibly_damaging(0.835) TCGA-05-4430-01 7 154862977 154862977 T C HTR5A-AS1 Missense_Mutation p.S13G 0.23 deleterious_low_confidence(0) benign(0.294) TCGA-05-4430-01 7 157929352 157929352 G T PTPRN2 Missense_Mutation p.Q390K 0.18 tolerated(0.66) benign(0.001) TCGA-05-4430-01 7 57529005 57529005 C A ZNF716 Missense_Mutation p.R280S 0.24 tolerated(0.38) benign(0.035) TCGA-05-4430-01 7 92080020 92080020 C G GATAD1 Missense_Mutation p.I127M 0.11 tolerated(0.09) possibly_damaging(0.809) TCGA-05-4430-01 7 92762064 92762064 C A SAMD9L Missense_Mutation p.G1074V 0.14 deleterious(0) possibly_damaging(0.644) TCGA-05-4430-01 7 93555509 93555509 G T GNG11 Missense_Mutation p.G68V 0.07 deleterious(0) probably_damaging(0.992) TCGA-05-4430-01 7 94791228 94791228 G C PPP1R9A Missense_Mutation p.G567R 0.11 deleterious(0) probably_damaging(1) TCGA-05-4430-01 7 98495465 98495465 G C TRRAP Missense_Mutation p.E203D 0.17 benign(0.217) TCGA-05-4430-01 7 99262907 99262907 A G CYP3A5 Silent p.I184I 0.16 TCGA-05-4430-01 7 99918570 99918570 T C SPDYE3 3'UTR 0.06 TCGA-05-4430-01 8 121706136 121706136 C A SNTB1 Missense_Mutation p.R195L 0.15 deleterious(0) probably_damaging(0.937) TCGA-05-4430-01 8 12878877 12878877 C A KIAA1456 Missense_Mutation p.S230Y 0.09 deleterious(0.01) benign(0.408) TCGA-05-4430-01 8 133953768 133953768 C A TG Silent p.V1738V 0.13 TCGA-05-4430-01 8 139180236 139180236 C A FAM135B Missense_Mutation p.S387I 0.16 deleterious(0.01) benign(0.273) TCGA-05-4430-01 8 145095635 145095635 T A SPATC1 Missense_Mutation p.S311R 0.15 tolerated(0.07) benign(0.002) TCGA-05-4430-01 8 145235188 145235188 G T MROH1 Silent p.G136G 0.11 TCGA-05-4430-01 8 17090038 17090038 T A CNOT7 Missense_Mutation p.L209F 0.08 deleterious(0) probably_damaging(1) TCGA-05-4430-01 8 17090042 17090042 C A CNOT7 Missense_Mutation p.G208V 0.07 deleterious(0) probably_damaging(0.999) TCGA-05-4430-01 8 2949091 2949091 C T CSMD1 Missense_Mutation p.R2411H 0.27 probably_damaging(0.999) TCGA-05-4430-01 8 41476485 41476485 G A AGPAT6 Silent p.V417V 0.13 TCGA-05-4430-01 8 51362272 51362272 C G SNTG1 Silent p.S88S 0.09 TCGA-05-4430-01 8 72942164 72942164 T A TRPA1 Missense_Mutation p.H970L 0.15 tolerated(0.07) benign(0.295) TCGA-05-4430-01 8 77764254 77764254 G T ZFHX4 Missense_Mutation p.Q1699H 0.09 benign(0.387) TCGA-05-4430-01 8 86158002 86158002 C T CA13 5'UTR 0.19 TCGA-05-4430-01 8 87242421 87242421 G T SLC7A13 Missense_Mutation p.A29E 0.06 deleterious(0) probably_damaging(0.965) TCGA-05-4430-01 9 103279049 103279049 G T TMEFF1 Missense_Mutation p.V186F 0.13 deleterious(0) possibly_damaging(0.809) TCGA-05-4430-01 9 112898590 112898590 C A PALM2-AKAP2 Missense_Mutation p.H256N 0.17 tolerated(0.41) possibly_damaging(0.64) TCGA-05-4430-01 9 140356755 140356755 C A PNPLA7 Missense_Mutation p.R1174L 0.09 deleterious(0) probably_damaging(0.942) TCGA-05-4430-01 9 20926351 20926351 A T FOCAD Missense_Mutation p.T1005S 0.09 deleterious(0.01) probably_damaging(0.992) TCGA-05-4430-01 9 21187224 21187224 T C IFNA4 Missense_Mutation p.S103G 0.12 deleterious(0.02) benign(0.024) TCGA-05-4430-01 9 33676082 33676082 G A PTENP1 RNA 0.08 TCGA-05-4430-01 9 36170205 36170205 G T CCIN Missense_Mutation p.A236S 0.22 tolerated(0.13) benign(0.048) TCGA-05-4430-01 9 39888226 39888226 C A SPATA31A2 Missense_Mutation p.Q405K 0.16 tolerated(0.59) benign(0.316) TCGA-05-4430-01 9 43625124 43625125 - T SPATA31A6 Frame_Shift_Ins p.T1188Nfs*14 0.18 TCGA-05-4430-01 9 65506644 65506644 G T SPATA31A7 Missense_Mutation p.P306T 0.16 tolerated(0.11) benign(0.38) TCGA-05-4430-01 9 84606311 84606311 G T SPATA31D1 Missense_Mutation p.C309F 0.08 tolerated(0.15) possibly_damaging(0.899) TCGA-05-4430-01 9 84608122 84608122 A T SPATA31D1 Missense_Mutation p.R913W 0.18 deleterious(0) probably_damaging(0.99) TCGA-05-4430-01 9 86503486 86503486 A C KIF27 Missense_Mutation p.I667M 0.08 tolerated(0.11) benign(0.322) TCGA-05-4430-01 9 87636230 87636230 T A NTRK2 Missense_Mutation p.Y799N 0.11 deleterious(0) probably_damaging(0.999) TCGA-05-4430-01 X 100086550 100086550 T A CSTF2 Silent p.P312P 0.06 TCGA-05-4430-01 X 101818324 101818324 T A NXF4 RNA 0.09 TCGA-05-4430-01 X 101858804 101858804 A T ARMCX5 3'UTR 0.14 TCGA-05-4430-01 X 102004639 102004639 C T BHLHB9 Missense_Mutation p.S239F 0.10 tolerated(0.62) benign(0.007) TCGA-05-4430-01 X 106846206 106846206 C A FRMPD3 Missense_Mutation p.A1679D 0.10 deleterious(0) probably_damaging(0.999) TCGA-05-4430-01 X 107381398 107381398 C A ATG4A Missense_Mutation p.A264E 0.13 deleterious(0) possibly_damaging(0.908) TCGA-05-4430-01 X 107821581 107821581 C A COL4A5 Missense_Mutation p.P250T 0.08 unknown(0) TCGA-05-4430-01 X 108708514 108708514 C A GUCY2F Missense_Mutation p.V297F 0.17 tolerated(0.28) probably_damaging(0.977) TCGA-05-4430-01 X 111090471 111090471 T A TRPC5 Missense_Mutation p.Y524F 0.12 deleterious(0.04) probably_damaging(0.988) TCGA-05-4430-01 X 111698312 111698312 G C ZCCHC16 Missense_Mutation p.S119T 0.09 tolerated(0.09) benign(0.007) TCGA-05-4430-01 X 114250291 114250291 T A IL13RA2 Missense_Mutation p.K63M 0.18 deleterious(0.02) possibly_damaging(0.827) TCGA-05-4430-01 X 118975155 118975155 C A UPF3B Nonsense_Mutation p.E231* 0.14 TCGA-05-4430-01 X 122765624 122765624 G T THOC2 Nonsense_Mutation p.S799* 0.08 TCGA-05-4430-01 X 123515111 123515111 G T TENM1 Missense_Mutation p.Q2492K 0.12 deleterious(0.05) benign(0.076) TCGA-05-4430-01 X 125298776 125298776 G A DCAF12L2 Missense_Mutation p.R378C 0.09 deleterious(0) probably_damaging(1) TCGA-05-4430-01 X 129318306 129318306 G T RAB33A Missense_Mutation p.M102I 0.15 tolerated(0.34) benign(0.245) TCGA-05-4430-01 X 133527957 133527957 C A PHF6 Missense_Mutation p.H131Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-05-4430-01 X 134681099 134681099 T A DDX26B Missense_Mutation p.N217K 0.14 deleterious(0.04) possibly_damaging(0.908) TCGA-05-4430-01 X 140993253 140993253 T A MAGEC1 Missense_Mutation p.S21R 0.11 tolerated_low_confidence(0.13) benign(0.307) TCGA-05-4430-01 X 142717965 142717965 G T SLITRK4 Silent p.A320A 0.13 TCGA-05-4430-01 X 144906317 144906317 C G SLITRK2 Missense_Mutation p.R792G 0.18 tolerated(0.09) possibly_damaging(0.483) TCGA-05-4430-01 X 14934407 14934407 G A MOSPD2 Silent p.Q425Q 0.16 TCGA-05-4430-01 X 149638184 149638184 G C MAMLD1 Missense_Mutation p.L88F 0.08 tolerated(0.57) benign(0.16) TCGA-05-4430-01 X 149638523 149638523 G C MAMLD1 Missense_Mutation p.Q201H 0.07 tolerated(0.09) benign(0.162) TCGA-05-4430-01 X 149638601 149638601 G A MAMLD1 Silent p.Q227Q 0.07 TCGA-05-4430-01 X 149638622 149638622 G A MAMLD1 Silent p.G234G 0.07 TCGA-05-4430-01 X 149638634 149638634 G A MAMLD1 Silent p.S238S 0.08 TCGA-05-4430-01 X 149639226 149639226 G C MAMLD1 Missense_Mutation p.E436Q 0.09 deleterious(0) probably_damaging(0.988) TCGA-05-4430-01 X 150912053 150912053 G T CNGA2 Missense_Mutation p.G360C 0.10 deleterious(0) probably_damaging(1) TCGA-05-4430-01 X 151899893 151899893 G T MAGEA12 Missense_Mutation p.P303H 0.07 tolerated(0.54) benign(0.007) TCGA-05-4430-01 X 153048470 153048470 C A SRPK3 Silent p.P215P 0.10 TCGA-05-4430-01 X 153069157 153069157 C A PDZD4 Missense_Mutation p.R654L 0.12 deleterious(0) possibly_damaging(0.588) TCGA-05-4430-01 X 153171897 153171897 C A AVPR2 Intron 0.17 TCGA-05-4430-01 X 154007556 154007556 A T MPP1 Missense_Mutation p.S433T 0.13 tolerated(1) benign(0.001) TCGA-05-4430-01 X 17744628 17744628 T C NHS Missense_Mutation p.V780A 0.10 tolerated(0.13) benign(0.011) TCGA-05-4430-01 X 3235287 3235287 G T MXRA5 Missense_Mutation p.N2145K 0.11 tolerated(0.05) benign(0.057) TCGA-05-4430-01 X 34149308 34149309 - A FAM47A Frame_Shift_Ins p.R363Lfs*33 0.12 TCGA-05-4430-01 X 36122683 36122683 C A CHDC2 Missense_Mutation p.T307K 0.06 tolerated(0.09) benign(0.037) TCGA-05-4430-01 X 36163017 36163017 G T CHDC2 3'UTR 0.13 TCGA-05-4430-01 X 37658247 37658247 G T CYBB Silent p.V238V 0.08 TCGA-05-4430-01 X 41012324 41012324 A G USP9X Silent p.L629L 0.17 TCGA-05-4430-01 X 46387869 46387869 C A ZNF674 Missense_Mutation p.G52W 0.12 tolerated(0.07) benign(0.015) TCGA-05-4430-01 X 47774732 47774732 G C ZNF81 Missense_Mutation p.Q229H 0.09 tolerated(1) benign(0.002) TCGA-05-4430-01 X 48754088 48754088 C A TIMM17B Missense_Mutation p.G27V 0.10 deleterious(0) probably_damaging(0.992) TCGA-05-4430-01 X 50119912 50119912 A G DGKK RNA 0.25 TCGA-05-4430-01 X 70342990 70342990 G T MED12 Missense_Mutation p.A511S 0.15 probably_damaging(0.98) TCGA-05-4430-01 X 73963899 73963899 G C KIAA2022 Missense_Mutation p.L165V 0.09 tolerated(0.23) possibly_damaging(0.671) TCGA-05-4430-01 X 75649077 75649077 C A MAGEE1 Missense_Mutation p.R252S 0.23 tolerated_low_confidence(0.63) benign(0) TCGA-05-4430-01 X 77086363 77086363 C A MAGT1 Missense_Mutation p.V343L 0.18 tolerated(0.19) benign(0.087) TCGA-05-4430-01 X 77913592 77913592 G A ZCCHC5 Missense_Mutation p.P109L 0.14 tolerated_low_confidence(0.19) benign(0.003) TCGA-05-4432-01 10 105763286 105763286 G A SLK Splice_Site p.X783_splice 0.11 TCGA-05-4432-01 10 111893481 111893481 G A ADD3 3'UTR 0.22 TCGA-05-4432-01 10 115977387 115977387 G A TDRD1 Missense_Mutation p.G766R 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-05-4432-01 10 118215342 118215342 G T PNLIPRP3 Missense_Mutation p.G189W 0.21 deleterious(0) probably_damaging(1) TCGA-05-4432-01 10 118314780 118314780 C A PNLIP Missense_Mutation p.T221K 0.10 deleterious(0) probably_damaging(0.985) TCGA-05-4432-01 10 118318690 118318690 G A PNLIP Missense_Mutation p.G319R 0.21 tolerated(0.1) benign(0.018) TCGA-05-4432-01 10 118350659 118350659 A T PNLIPRP1 Silent p.T6T 0.13 TCGA-05-4432-01 10 118383456 118383456 G T PNLIPRP2 Intron 0.15 TCGA-05-4432-01 10 118423607 118423607 C A C10orf82 3'UTR 0.12 TCGA-05-4432-01 10 119027241 119027241 G C SLC18A2 Missense_Mutation p.A394P 0.10 deleterious(0) possibly_damaging(0.908) TCGA-05-4432-01 10 121571426 121571426 G T INPP5F Missense_Mutation p.E615D 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-05-4432-01 10 129350781 129350781 G C NPS Missense_Mutation p.D50H 0.03 deleterious(0.05) benign(0.037) TCGA-05-4432-01 10 15296879 15296879 C A FAM171A1 Splice_Site p.X140_splice 0.12 TCGA-05-4432-01 10 15821093 15821093 G A FAM188A Silent p.P412P 0.27 TCGA-05-4432-01 10 16878336 16878336 C A CUBN Missense_Mutation p.A3360S 0.10 tolerated(0.48) benign(0.057) TCGA-05-4432-01 10 16878337 16878337 C A CUBN Silent p.S3359S 0.10 TCGA-05-4432-01 10 17275676 17275676 G A VIM Missense_Mutation p.E239K 0.14 deleterious(0) benign(0.081) TCGA-05-4432-01 10 23235133 23235133 C G ARMC3 Missense_Mutation p.P37A 0.28 deleterious(0.01) possibly_damaging(0.682) TCGA-05-4432-01 10 23235134 23235134 C A ARMC3 Missense_Mutation p.P37Q 0.28 deleterious(0.05) probably_damaging(0.933) TCGA-05-4432-01 10 25887875 25887875 C A GPR158 Missense_Mutation p.P1107H 0.13 tolerated(0.91) benign(0) TCGA-05-4432-01 10 26463295 26463295 A - MYO3A Frame_Shift_Del p.K1368Rfs*19 0.29 TCGA-05-4432-01 10 29782203 29782203 G A SVIL Missense_Mutation p.P1320L 0.24 tolerated(0.09) benign(0.001) TCGA-05-4432-01 10 30317933 30317933 C A KIAA1462 Missense_Mutation p.A382S 0.30 tolerated(0.12) benign(0.409) TCGA-05-4432-01 10 38343873 38343873 A G ZNF33A Missense_Mutation p.H274R 0.27 tolerated(0.35) benign(0.002) TCGA-05-4432-01 10 38407520 38407520 G T ZNF37A Missense_Mutation p.A481S 0.14 tolerated(0.76) probably_damaging(0.995) TCGA-05-4432-01 10 43596063 43596063 G T RET Missense_Mutation p.R77L 0.32 tolerated_low_confidence(0.3) benign(0.153) TCGA-05-4432-01 10 5566982 5566982 C A CALML3 5'UTR 0.42 TCGA-05-4432-01 10 5566983 5566983 G T CALML3 5'UTR 0.42 TCGA-05-4432-01 10 56077052 56077052 G A PCDH15 Silent p.A285A 0.12 TCGA-05-4432-01 10 58117948 58117948 T A ZWINT Splice_Site 0.27 TCGA-05-4432-01 10 5979127 5979127 C A FBXO18 Missense_Mutation p.R1057S 0.08 deleterious(0.01) probably_damaging(0.989) TCGA-05-4432-01 10 61011385 61011385 C T FAM13C Silent p.L528L 0.22 TCGA-05-4432-01 10 62038579 62038579 C A ANK3 Missense_Mutation p.V123L 0.07 probably_damaging(0.948) TCGA-05-4432-01 10 62634766 62634766 G A RHOBTB1 Silent p.A587A 0.12 TCGA-05-4432-01 10 68526032 68526032 C A CTNNA3 Missense_Mutation p.R424M 0.11 deleterious(0.01) possibly_damaging(0.803) TCGA-05-4432-01 10 72539460 72539460 G A TBATA Missense_Mutation p.P106S 0.09 tolerated(0.74) benign(0.138) TCGA-05-4432-01 10 73269950 73269950 T A CDH23-AS1 Intron 0.24 TCGA-05-4432-01 10 79571774 79571774 C T DLG5 Silent p.A1410A 0.11 TCGA-05-4432-01 10 84745279 84745279 T C NRG3 Missense_Mutation p.L670P 0.15 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-05-4432-01 10 91371758 91371758 C A PANK1 Missense_Mutation p.V251L 0.12 deleterious(0) probably_damaging(0.993) TCGA-05-4432-01 10 96748684 96748684 C T CYP2C9 Silent p.L458L 0.13 TCGA-05-4432-01 11 105781249 105781249 C A GRIA4 Missense_Mutation p.T416K 0.08 deleterious(0) possibly_damaging(0.825) TCGA-05-4432-01 11 108352829 108352829 T C KDELC2 Missense_Mutation p.R269G 0.06 tolerated(0.09) benign(0.02) TCGA-05-4432-01 11 110023681 110023681 A T ZC3H12C Nonsense_Mutation p.K271* 0.23 TCGA-05-4432-01 11 110106875 110106875 T A RDX Silent p.L431L 0.08 TCGA-05-4432-01 11 1101128 1101128 G T MUC2 Silent p.T2509T 0.14 TCGA-05-4432-01 11 114401032 114401032 T C NXPE1 Missense_Mutation p.Y91C 0.04 deleterious(0) probably_damaging(0.998) TCGA-05-4432-01 11 119599300 119599300 C A PVRL1 5'UTR 0.35 TCGA-05-4432-01 11 123886304 123886304 C T OR10G4 Missense_Mutation p.T8I 0.13 deleterious(0.02) possibly_damaging(0.824) TCGA-05-4432-01 11 123894032 123894032 T A OR10G9 Missense_Mutation p.F105I 0.06 deleterious(0.01) benign(0.005) TCGA-05-4432-01 11 124253151 124253151 A T OR8B2 Missense_Mutation p.L30Q 0.15 deleterious_low_confidence(0) possibly_damaging(0.779) TCGA-05-4432-01 11 125499354 125499354 G T CHEK1 Missense_Mutation p.R141S 0.48 tolerated(0.15) benign(0.279) TCGA-05-4432-01 11 128781127 128781127 C A KCNJ5 Intron 0.26 TCGA-05-4432-01 11 129785714 129785714 C G PRDM10 Missense_Mutation p.K793N 0.08 deleterious(0) probably_damaging(0.996) TCGA-05-4432-01 11 132306555 132306555 G T OPCML Silent p.T261T 0.10 TCGA-05-4432-01 11 30034035 30034035 T C KCNA4 Missense_Mutation p.H64R 0.17 tolerated_low_confidence(0.79) unknown(0) TCGA-05-4432-01 11 36596940 36596940 G T RAG1 Missense_Mutation p.G696C 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-05-4432-01 11 373108 373108 C A B4GALNT4 Missense_Mutation p.A176E 0.25 deleterious(0.01) probably_damaging(0.944) TCGA-05-4432-01 11 43427092 43427092 G T TTC17 Missense_Mutation p.R503I 0.45 deleterious(0) possibly_damaging(0.871) TCGA-05-4432-01 11 44074297 44074297 C A ACCSL Missense_Mutation p.H286Q 0.51 deleterious(0.02) probably_damaging(0.95) TCGA-05-4432-01 11 4702914 4702914 G T OR51E2 3'UTR 0.11 TCGA-05-4432-01 11 47307001 47307001 G T MADD Splice_Site p.X804_splice 0.12 TCGA-05-4432-01 11 4790262 4790262 C A OR51F1 Missense_Mutation p.V296L 0.29 tolerated(0.16) benign(0.053) TCGA-05-4432-01 11 5345488 5345488 C G OR51B2 Missense_Mutation p.G14R 0.15 deleterious(0) probably_damaging(0.988) TCGA-05-4432-01 11 55065640 55065640 G A TRIM51HP RNA 0.43 TCGA-05-4432-01 11 55111106 55111106 G T OR4A16 Missense_Mutation p.V144L 0.17 tolerated_low_confidence(0.62) benign(0.06) TCGA-05-4432-01 11 55563765 55563765 C T OR5D14 Missense_Mutation p.S245F 0.13 deleterious(0) probably_damaging(0.999) TCGA-05-4432-01 11 55579237 55579237 G A OR5L1 Missense_Mutation p.V99M 0.13 tolerated(0.18) benign(0.126) TCGA-05-4432-01 11 55587852 55587852 C T OR5D18 Silent p.I249I 0.17 TCGA-05-4432-01 11 55657475 55657475 G T TRIM51 Silent p.G273G 0.10 TCGA-05-4432-01 11 55890117 55890117 A G OR8H3 Missense_Mutation p.N90S 0.03 tolerated(0.11) benign(0.001) TCGA-05-4432-01 11 5602329 5602329 C A OR52B6 Missense_Mutation p.L75M 0.35 deleterious(0) probably_damaging(0.997) TCGA-05-4432-01 11 56143809 56143809 C T OR8U1 Missense_Mutation p.A237V 0.10 tolerated(0.05) possibly_damaging(0.79) TCGA-05-4432-01 11 57996204 57996204 G T OR10Q1 Silent p.A48A 0.15 TCGA-05-4432-01 11 59945759 59945759 T A MS4A6A Missense_Mutation p.T133S 0.08 tolerated(0.27) possibly_damaging(0.719) TCGA-05-4432-01 11 60703933 60703933 C G TMEM132A Missense_Mutation p.Q877E 0.04 deleterious(0.01) probably_damaging(0.96) TCGA-05-4432-01 11 62063821 62063821 C A SCGB1D4 3'UTR 0.20 TCGA-05-4432-01 11 63586320 63586320 C A C11orf84 Silent p.A260A 0.36 TCGA-05-4432-01 11 64323733 64323733 T A SLC22A11 Missense_Mutation p.F88I 0.15 deleterious(0) probably_damaging(0.959) TCGA-05-4432-01 11 6458851 6458851 C A HPX Silent p.T174T 0.15 TCGA-05-4432-01 11 65266460 65266460 T C MALAT1 RNA 0.13 TCGA-05-4432-01 11 65810715 65810715 G T GAL3ST3 Missense_Mutation p.P187T 0.41 deleterious(0) probably_damaging(0.999) TCGA-05-4432-01 11 65819818 65819818 C A SF3B2 5'UTR 0.14 TCGA-05-4432-01 11 66109713 66109713 C T BRMS1 Splice_Site 0.11 TCGA-05-4432-01 11 66204347 66204347 C A MRPL11 Intron 0.09 TCGA-05-4432-01 11 66837915 66837915 A G RHOD Missense_Mutation p.H117R 0.33 deleterious(0) probably_damaging(0.997) TCGA-05-4432-01 11 67219375 67219375 C A GPR152 Missense_Mutation p.W274L 0.23 tolerated(0.39) probably_damaging(1) TCGA-05-4432-01 11 67925826 67925826 C A SUV420H1 Missense_Mutation p.V663L 0.07 tolerated(0.79) benign(0.001) TCGA-05-4432-01 11 68171004 68171004 G A LRP5 Silent p.P546P 0.11 TCGA-05-4432-01 11 6891892 6891892 C A OR10A2 Missense_Mutation p.P303T 0.33 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-05-4432-01 11 7064041 7064041 G A NLRP14 Missense_Mutation p.D262N 0.22 tolerated(0.06) probably_damaging(1) TCGA-05-4432-01 11 7079669 7079669 T G NLRP14 Missense_Mutation p.L874R 0.05 deleterious(0) probably_damaging(0.999) TCGA-05-4432-01 11 71293440 71293440 G A KRTAP5-11 Silent p.V148V 0.09 TCGA-05-4432-01 11 73103419 73103419 G T RELT Silent p.L177L 0.20 TCGA-05-4432-01 11 82625869 82625869 C G C11orf82 Missense_Mutation p.S30C 0.18 deleterious(0) probably_damaging(1) TCGA-05-4432-01 11 842516 842516 G T POLR2L 5'UTR 0.23 TCGA-05-4432-01 11 89537367 89537367 G T TRIM49 Missense_Mutation p.Q91K 0.23 deleterious(0.03) benign(0.229) TCGA-05-4432-01 12 100774686 100774686 G A SLC17A8 Missense_Mutation p.M103I 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-05-4432-01 12 100928738 100928738 C A NR1H4 Silent p.T233T 0.41 TCGA-05-4432-01 12 106890686 106890686 G A POLR3B Missense_Mutation p.G992S 0.13 deleterious(0) probably_damaging(0.998) TCGA-05-4432-01 12 107393382 107393382 C A CRY1 Missense_Mutation p.A362S 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-05-4432-01 12 11214459 11214459 A C TAS2R46 Missense_Mutation p.F145L 0.05 tolerated(0.46) benign(0.004) TCGA-05-4432-01 12 112665893 112665893 C A HECTD4 Missense_Mutation p.R2139I 0.34 benign(0.116) TCGA-05-4432-01 12 124862883 124862883 C A NCOR2 Silent p.A689A 0.18 TCGA-05-4432-01 12 129559152 129559152 C G TMEM132D Silent p.T856T 0.11 TCGA-05-4432-01 12 133447364 133447364 C A CHFR Missense_Mutation p.A117S 0.10 tolerated(0.06) probably_damaging(0.991) TCGA-05-4432-01 12 21970121 21970121 C A ABCC9 Missense_Mutation p.D1298Y 0.32 tolerated(0.11) benign(0.269) TCGA-05-4432-01 12 25243005 25243005 A T LRMP Missense_Mutation p.R160S 0.14 deleterious(0) probably_damaging(0.974) TCGA-05-4432-01 12 266787 266787 C A IQSEC3 Missense_Mutation p.N790K 0.05 deleterious(0) probably_damaging(0.982) TCGA-05-4432-01 12 27835424 27835424 G T PPFIBP1 Missense_Mutation p.W723C 0.27 deleterious(0) probably_damaging(1) TCGA-05-4432-01 12 34175352 34175352 C T ALG10 5'UTR 0.09 TCGA-05-4432-01 12 39087640 39087640 C - CPNE8 Frame_Shift_Del p.G321Afs*12 0.28 TCGA-05-4432-01 12 39752118 39752118 T A KIF21A Missense_Mutation p.L359F 0.12 deleterious(0) probably_damaging(1) TCGA-05-4432-01 12 43826240 43826240 G T ADAMTS20 Missense_Mutation p.S988Y 0.15 tolerated(0.51) probably_damaging(0.926) TCGA-05-4432-01 12 49315194 49315194 C A CCDC65 Missense_Mutation p.H475N 0.05 tolerated(0.38) benign(0.002) TCGA-05-4432-01 12 49315195 49315195 A T CCDC65 Missense_Mutation p.H475L 0.05 tolerated(0.28) benign(0) TCGA-05-4432-01 12 5020837 5020837 C T KCNA1 Missense_Mutation p.S98F 0.11 deleterious(0) probably_damaging(1) TCGA-05-4432-01 12 52822519 52822519 C G KRT75 Missense_Mutation p.E348D 0.04 deleterious(0) probably_damaging(0.981) TCGA-05-4432-01 12 55524459 55524459 C T OR9K2 Silent p.L303L 0.28 TCGA-05-4432-01 12 55715313 55715313 A C OR6C1 Silent p.T310T 0.11 TCGA-05-4432-01 12 56075950 56075950 A G METTL7B Missense_Mutation p.M138V 0.15 tolerated(1) benign(0.012) TCGA-05-4432-01 12 56221691 56221699 CCTGCCTGT - DNAJC14 In_Frame_Del p.Q249_G251del 0.16 TCGA-05-4432-01 12 56355437 56355437 C A PMEL Missense_Mutation p.W52C 0.12 deleterious(0) probably_damaging(1) TCGA-05-4432-01 12 56498385 56498385 C T PA2G4 5'UTR 0.24 TCGA-05-4432-01 12 64814133 64814133 G T XPOT Missense_Mutation p.R225S 0.32 deleterious(0) possibly_damaging(0.529) TCGA-05-4432-01 12 66814542 66814542 G T GRIP1 Missense_Mutation p.P547H 0.31 deleterious(0) possibly_damaging(0.557) TCGA-05-4432-01 12 72667204 72667204 G T TRHDE Missense_Mutation p.V216F 0.08 tolerated(0.28) benign(0.052) TCGA-05-4432-01 12 75692486 75692486 C A CAPS2 Missense_Mutation p.R361L 0.46 tolerated(0.3) benign(0.031) TCGA-05-4432-01 12 78444710 78444710 G C NAV3 Missense_Mutation p.G767R 0.11 deleterious(0.01) possibly_damaging(0.717) TCGA-05-4432-01 12 8085705 8085705 C A SLC2A3 Missense_Mutation p.K49N 0.30 deleterious(0.03) benign(0.014) TCGA-05-4432-01 12 83359552 83359552 C T TMTC2 Intron 0.31 TCGA-05-4432-01 12 96641401 96641401 G T ELK3 Missense_Mutation p.L297F 0.11 deleterious(0) probably_damaging(0.999) TCGA-05-4432-01 12 99074148 99074148 A G APAF1 Missense_Mutation p.I672V 0.24 tolerated(0.39) benign(0.016) TCGA-05-4432-01 13 101710333 101710333 C A NALCN Missense_Mutation p.G1661W 0.21 deleterious(0) possibly_damaging(0.832) TCGA-05-4432-01 13 106142150 106142150 C T DAOA Intron 0.38 TCGA-05-4432-01 13 107822751 107822751 C T FAM155A 3'UTR 0.31 TCGA-05-4432-01 13 26620787 26620787 G A SHISA2 Missense_Mutation p.T251M 0.50 deleterious(0.02) possibly_damaging(0.579) TCGA-05-4432-01 13 52709865 52709865 C A NEK3 Missense_Mutation p.G420C 0.19 deleterious(0.02) probably_damaging(0.928) TCGA-05-4432-01 13 58207531 58207531 G T PCDH17 Missense_Mutation p.S284I 0.12 deleterious(0) possibly_damaging(0.58) TCGA-05-4432-01 13 95829973 95829973 T A ABCC4 Missense_Mutation p.H572L 0.26 deleterious(0.04) possibly_damaging(0.852) TCGA-05-4432-01 13 96293708 96293708 C T DZIP1 Silent p.E146E 0.27 TCGA-05-4432-01 14 102718263 102718263 T A MOK Missense_Mutation p.H118L 0.26 deleterious(0) probably_damaging(0.993) TCGA-05-4432-01 14 105818726 105818726 A G PACS2 Silent p.R73R 0.08 TCGA-05-4432-01 14 20216093 20216094 - T OR4Q3 Frame_Shift_Ins p.C170Lfs*5 0.14 TCGA-05-4432-01 14 20216282 20216282 G A OR4Q3 Silent p.Q232Q 0.08 TCGA-05-4432-01 14 20403987 20403987 T C OR4K1 Silent p.H54H 0.08 TCGA-05-4432-01 14 20612039 20612039 A T OR4N5 Missense_Mutation p.I49L 0.28 deleterious(0) benign(0.213) TCGA-05-4432-01 14 20612550 20612550 C A OR4N5 Missense_Mutation p.A219E 0.04 deleterious(0.01) possibly_damaging(0.744) TCGA-05-4432-01 14 20665955 20665955 C A OR11G2 Missense_Mutation p.A154E 0.18 deleterious(0.03) benign(0.053) TCGA-05-4432-01 14 21051954 21051954 T A RNASE11 3'UTR 0.22 TCGA-05-4432-01 14 21052309 21052309 C G RNASE11 Missense_Mutation p.E109Q 0.14 deleterious(0.02) probably_damaging(0.987) TCGA-05-4432-01 14 21052324 21052324 A T RNASE11 Missense_Mutation p.W104R 0.14 tolerated(0.12) probably_damaging(0.995) TCGA-05-4432-01 14 23586879 23586879 G T CEBPE Missense_Mutation p.S221R 0.13 deleterious(0) probably_damaging(0.992) TCGA-05-4432-01 14 23900116 23900116 G T MYH7 Missense_Mutation p.L297M 0.12 deleterious(0.02) probably_damaging(0.996) TCGA-05-4432-01 14 38277948 38277948 T C TTC6 Missense_Mutation p.L1489P 0.04 tolerated(0.16) probably_damaging(1) TCGA-05-4432-01 14 44974853 44974853 C T FSCB Missense_Mutation p.M446I 0.26 tolerated(0.19) benign(0.006) TCGA-05-4432-01 14 58869474 58869474 C A TOMM20L Missense_Mutation p.S86Y 0.19 deleterious(0) possibly_damaging(0.844) TCGA-05-4432-01 14 68042641 68042641 G A PLEKHH1 Silent p.L757L 0.11 TCGA-05-4432-01 14 75469819 75469819 G C EIF2B2 Silent p.L42L 0.08 TCGA-05-4432-01 14 88401002 88401002 C A GALC 3'UTR 0.09 TCGA-05-4432-01 14 95906001 95906001 C G SYNE3 Missense_Mutation p.E732Q 0.21 tolerated(0.59) benign(0.091) TCGA-05-4432-01 14 96922763 96922763 T C AK7 Missense_Mutation p.L393P 0.12 deleterious(0) probably_damaging(0.995) TCGA-05-4432-01 14 99183529 99183529 C G C14orf177 Missense_Mutation p.A99G 0.09 tolerated_low_confidence(0.49) possibly_damaging(0.567) TCGA-05-4432-01 15 100942989 100942989 C A CERS3 Nonsense_Mutation p.E361* 0.12 TCGA-05-4432-01 15 25422001 25422001 A G SNORD115-4 RNA 0.23 TCGA-05-4432-01 15 27777780 27777780 C T GABRG3 Missense_Mutation p.T386I 0.17 tolerated(0.25) benign(0.097) TCGA-05-4432-01 15 29346679 29346679 C A APBA2 Missense_Mutation p.P198T 0.22 deleterious_low_confidence(0.01) benign(0.15) TCGA-05-4432-01 15 44905680 44905680 G C SPG11 Missense_Mutation p.H1031Q 0.12 tolerated(0.22) possibly_damaging(0.767) TCGA-05-4432-01 15 45660383 45660383 C A GATM Missense_Mutation p.R187L 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-05-4432-01 15 48057206 48057206 G T SEMA6D Missense_Mutation p.L460F 0.06 deleterious(0.02) probably_damaging(1) TCGA-05-4432-01 15 48413344 48413344 C A SLC24A5 Missense_Mutation p.R35S 0.20 deleterious(0.01) benign(0.003) TCGA-05-4432-01 15 48537080 48537080 C A SLC12A1 Nonsense_Mutation p.Y477* 0.26 TCGA-05-4432-01 15 50519376 50519376 G A SLC27A2 Splice_Site p.X486_splice 0.05 TCGA-05-4432-01 15 54003555 54003555 A T WDR72 Missense_Mutation p.Y279N 0.17 deleterious(0.01) benign(0.078) TCGA-05-4432-01 15 60297128 60297128 C T FOXB1 5'UTR 0.21 TCGA-05-4432-01 15 72638745 72638745 C T HEXA Intron 0.31 TCGA-05-4432-01 15 74178875 74178875 G T TBC1D21 Silent p.V233V 0.12 TCGA-05-4432-01 15 75310808 75310808 G T SCAMP5 Missense_Mutation p.V149L 0.09 tolerated(0.08) benign(0.005) TCGA-05-4432-01 15 75982722 75982722 A T CSPG4 Missense_Mutation p.F228L 0.40 tolerated(0.22) possibly_damaging(0.562) TCGA-05-4432-01 15 99512842 99512842 C A PGPEP1L Silent p.A61A 0.14 TCGA-05-4432-01 15 99512843 99512843 G A PGPEP1L Missense_Mutation p.A61V 0.15 tolerated(0.14) benign(0.044) TCGA-05-4432-01 16 1291632 1291632 C A TPSAB1 Missense_Mutation p.P144H 0.20 deleterious(0.02) probably_damaging(0.932) TCGA-05-4432-01 16 14989374 14989374 A T NOMO1 Missense_Mutation p.I1181F 0.21 tolerated(0.07) benign(0.005) TCGA-05-4432-01 16 15222123 15222123 T G RP11-1186N24.5 RNA 0.07 TCGA-05-4432-01 16 17353089 17353089 G T XYLT1 Silent p.A223A 0.16 TCGA-05-4432-01 16 18882704 18882704 T C SMG1 Missense_Mutation p.K762E 0.32 deleterious(0.05) benign(0.152) TCGA-05-4432-01 16 24909338 24909338 C A SLC5A11 Missense_Mutation p.A305D 0.04 deleterious(0) probably_damaging(0.999) TCGA-05-4432-01 16 28488912 28488912 G T CLN3 Silent p.I414I 0.34 TCGA-05-4432-01 16 30041747 30041747 G A FAM57B Silent p.A34A 0.11 TCGA-05-4432-01 16 3493189 3493189 A T ZNF597 5'UTR 0.15 TCGA-05-4432-01 16 48304127 48304127 G T LONP2 Nonsense_Mutation p.E395* 0.17 TCGA-05-4432-01 16 51174718 51174718 G T SALL1 Missense_Mutation p.T472N 0.19 deleterious(0) probably_damaging(1) TCGA-05-4432-01 16 51175401 51175401 C G SALL1 Silent p.L244L 0.25 TCGA-05-4432-01 16 53338272 53338272 T G CHD9 Silent p.S2118S 0.23 TCGA-05-4432-01 16 55360341 55360341 C T IRX6 Missense_Mutation p.L47F 0.20 tolerated(0.22) possibly_damaging(0.779) TCGA-05-4432-01 16 55883641 55883641 G T CES5A Missense_Mutation p.Q469K 0.21 deleterious(0.01) benign(0.338) TCGA-05-4432-01 16 64984878 64984878 C - CDH11 Frame_Shift_Del p.Q563Rfs*10 0.27 TCGA-05-4432-01 16 72110394 72110394 C A HPR Missense_Mutation p.A154E 0.33 tolerated(0.1) benign(0.271) TCGA-05-4432-01 16 87678356 87678356 G - JPH3 Frame_Shift_Del p.W292* 0.28 TCGA-05-4432-01 16 89764600 89764600 C A SPATA2L Silent p.V139V 0.24 TCGA-05-4432-01 17 10243518 10243518 T A MYH13 Missense_Mutation p.T669S 0.15 deleterious(0.01) benign(0.146) TCGA-05-4432-01 17 10558331 10558331 G A MYH3 Silent p.L17L 0.08 TCGA-05-4432-01 17 12666523 12666523 G T MYOCD Missense_Mutation p.Q841H 0.31 tolerated(0.1) benign(0.03) TCGA-05-4432-01 17 15406280 15406280 G A TVP23C Silent p.L243L 0.08 TCGA-05-4432-01 17 1557163 1557163 G A PRPF8 Silent p.R2045R 0.25 TCGA-05-4432-01 17 16326837 16326837 A G TRPV2 Missense_Mutation p.Y227C 0.08 deleterious(0) probably_damaging(0.998) TCGA-05-4432-01 17 18682202 18682202 G T FBXW10 Missense_Mutation p.R917M 0.25 deleterious(0) probably_damaging(0.95) TCGA-05-4432-01 17 21731297 21731297 G A UBBP4 Intron 0.24 TCGA-05-4432-01 17 3366057 3366057 C A SPATA22 Missense_Mutation p.W59C 0.34 deleterious(0) probably_damaging(0.994) TCGA-05-4432-01 17 34079564 34079564 G - GAS2L2 Frame_Shift_Del p.A103Pfs*29 0.25 TCGA-05-4432-01 17 35615290 35615290 G - ACACA Frame_Shift_Del p.M503Wfs*13 0.23 TCGA-05-4432-01 17 36499029 36499029 G T GPR179 Missense_Mutation p.P215Q 0.30 deleterious(0.01) benign(0.44) TCGA-05-4432-01 17 40063719 40063719 G A ACLY Silent p.P241P 0.24 TCGA-05-4432-01 17 42828116 42828116 C A DBF4B Missense_Mutation p.P448Q 0.27 deleterious_low_confidence(0.01) benign(0.006) TCGA-05-4432-01 17 46628126 46628126 G - HOXB3 Frame_Shift_Del p.P289Rfs*140 0.33 TCGA-05-4432-01 17 47075138 47075138 G A IGF2BP1 Missense_Mutation p.E11K 0.26 tolerated(0.15) benign(0.037) TCGA-05-4432-01 17 49072464 49072464 C G SPAG9 Missense_Mutation p.R727P 0.32 tolerated(0.2) benign(0.125) TCGA-05-4432-01 17 60768328 60768328 A T MRC2 Missense_Mutation p.Q1344L 0.30 tolerated(0.77) benign(0.088) TCGA-05-4432-01 17 61566371 61566371 G C ACE Missense_Mutation p.R840P 0.27 tolerated(0.1) possibly_damaging(0.83) TCGA-05-4432-01 17 63049634 63049634 G A GNA13 Nonsense_Mutation p.R166* 0.17 TCGA-05-4432-01 17 63554271 63554271 G T AXIN2 Nonsense_Mutation p.Y156* 0.36 TCGA-05-4432-01 17 64684432 64684432 T C PRKCA Silent p.P233P 0.10 TCGA-05-4432-01 17 67178860 67178860 C A ABCA10 Missense_Mutation p.D863Y 0.14 deleterious(0) probably_damaging(0.971) TCGA-05-4432-01 17 7097767 7097767 T A DLG4 Missense_Mutation p.Q493L 0.40 deleterious(0) probably_damaging(1) TCGA-05-4432-01 17 72700714 72700714 C T CD300LF Missense_Mutation p.M95I 0.17 tolerated(0.08) possibly_damaging(0.677) TCGA-05-4432-01 17 73317748 73317748 C A GRB2 Missense_Mutation p.V154L 0.11 tolerated(0.74) benign(0) TCGA-05-4432-01 17 74071267 74071267 G T GALR2 Silent p.V101V 0.40 TCGA-05-4432-01 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.21 TCGA-05-4432-01 17 7577095 7577095 G T TP53 Missense_Mutation p.D281E 0.29 deleterious(0.01) probably_damaging(0.971) TCGA-05-4432-01 17 79817264 79817264 C A P4HB Splice_Site p.X49_splice 0.17 TCGA-05-4432-01 17 9820477 9820477 G T GAS7 3'UTR 0.26 TCGA-05-4432-01 17 9862589 9862589 G - GAS7 Intron 0.16 TCGA-05-4432-01 18 20716572 20716572 G T CABLES1 Splice_Site p.X282_splice 0.20 TCGA-05-4432-01 18 43619913 43619913 C A PSTPIP2 Missense_Mutation p.R45M 0.12 deleterious(0) probably_damaging(0.999) TCGA-05-4432-01 18 50705378 50705378 G T DCC Missense_Mutation p.V489L 0.19 tolerated(0.05) possibly_damaging(0.607) TCGA-05-4432-01 18 5397266 5397266 C A EPB41L3 Missense_Mutation p.G878W 0.15 tolerated_low_confidence(0.19) benign(0.001) TCGA-05-4432-01 18 54547264 54547264 G C WDR7 Missense_Mutation p.V1132L 0.16 deleterious(0) probably_damaging(0.98) TCGA-05-4432-01 18 5489113 5489113 C A EPB41L3 Missense_Mutation p.G24W 0.36 deleterious(0) possibly_damaging(0.839) TCGA-05-4432-01 18 56204617 56204617 G - ALPK2 Frame_Shift_Del p.S935Afs*19 0.20 TCGA-05-4432-01 18 61077680 61077680 C G VPS4B Splice_Site p.X47_splice 0.05 TCGA-05-4432-01 18 61587111 61587111 C T SERPINB10 Silent p.I154I 0.13 TCGA-05-4432-01 19 11138617 11138617 A G SMARCA4 Missense_Mutation p.R1125G 0.21 possibly_damaging(0.882) TCGA-05-4432-01 19 11144113 11144113 G A SMARCA4 Missense_Mutation p.G1232S 0.15 possibly_damaging(0.797) TCGA-05-4432-01 19 14492287 14492287 C T CD97 5'UTR 0.14 TCGA-05-4432-01 19 14952213 14952213 T C OR7A10 Silent p.Q159Q 0.40 TCGA-05-4432-01 19 16503150 16503150 C A EPS15L1 Missense_Mutation p.D690Y 0.22 deleterious(0) probably_damaging(0.967) TCGA-05-4432-01 19 16535930 16535930 C A EPS15L1 Silent p.G252G 0.47 TCGA-05-4432-01 19 16973310 16973310 G T SIN3B Silent p.R402R 0.15 TCGA-05-4432-01 19 18245766 18245766 A T MAST3 Missense_Mutation p.E586V 0.11 deleterious(0) probably_damaging(0.988) TCGA-05-4432-01 19 18649233 18649233 T C FKBP8 Missense_Mutation p.I189V 0.11 tolerated(0.34) possibly_damaging(0.548) TCGA-05-4432-01 19 19389590 19389590 A G SUGP1 Missense_Mutation p.L515P 0.36 deleterious(0) probably_damaging(0.995) TCGA-05-4432-01 19 20003499 20003499 A C ZNF253 Silent p.I481I 0.05 TCGA-05-4432-01 19 20736525 20736525 C A ZNF737 Silent p.L40L 0.15 TCGA-05-4432-01 19 21116875 21116875 G T ZNF85 Nonsense_Mutation p.E17* 0.15 TCGA-05-4432-01 19 22155159 22155159 C A ZNF208 Nonsense_Mutation p.E893* 0.08 TCGA-05-4432-01 19 31770490 31770490 T A TSHZ3 Missense_Mutation p.H70L 0.13 tolerated(0.09) benign(0.396) TCGA-05-4432-01 19 34821190 34821190 C T KIAA0355 Missense_Mutation p.P401S 0.12 tolerated(0.13) probably_damaging(0.986) TCGA-05-4432-01 19 35775840 35775840 G T HAMP Splice_Site p.X51_splice 0.10 TCGA-05-4432-01 19 36347997 36347997 A C KIRREL2 5'UTR 0.08 TCGA-05-4432-01 19 36831785 36831785 T C ZFP14 Missense_Mutation p.K315E 0.05 deleterious(0.02) probably_damaging(0.998) TCGA-05-4432-01 19 36884792 36884792 A G ZFP82 Silent p.S150S 0.23 TCGA-05-4432-01 19 37643891 37643891 C A ZNF585A Missense_Mutation p.G249C 0.11 deleterious(0) probably_damaging(0.978) TCGA-05-4432-01 19 38190487 38190487 G C ZNF607 Missense_Mutation p.P182R 0.09 tolerated(0.75) benign(0) TCGA-05-4432-01 19 39914084 39914084 G A PLEKHG2 Missense_Mutation p.G797D 0.17 deleterious_low_confidence(0.04) possibly_damaging(0.548) TCGA-05-4432-01 19 39978750 39978750 G T TIMM50 Missense_Mutation p.C352F 0.15 tolerated(0.1) benign(0.237) TCGA-05-4432-01 19 40957343 40957343 C T BLVRB Missense_Mutation p.D131N 0.12 deleterious(0) probably_damaging(1) TCGA-05-4432-01 19 41847787 41847787 C A TGFB1 Splice_Site p.X287_splice 0.08 TCGA-05-4432-01 19 43763022 43763022 G T PSG9 Silent p.I325I 0.12 TCGA-05-4432-01 19 44273613 44273613 G A KCNN4 Silent p.L344L 0.05 TCGA-05-4432-01 19 45029229 45029229 A T CEACAM20 RNA 0.09 TCGA-05-4432-01 19 47909680 47909680 G C MEIS3 Intron 0.13 TCGA-05-4432-01 19 47920559 47920559 G T MEIS3 Missense_Mutation p.L21M 0.13 tolerated(0.48) possibly_damaging(0.905) TCGA-05-4432-01 19 48558262 48558262 G C PLA2G4C Silent p.P444P 0.43 TCGA-05-4432-01 19 49224084 49224084 G A RASIP1 Missense_Mutation p.H955Y 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.628) TCGA-05-4432-01 19 49671273 49671273 G A TRPM4 Missense_Mutation p.G123R 0.12 deleterious(0) probably_damaging(0.996) TCGA-05-4432-01 19 51217450 51217450 G T SHANK1 Nonsense_Mutation p.S210* 0.09 TCGA-05-4432-01 19 51226833 51226833 C T CLEC11A Silent p.G17G 0.04 TCGA-05-4432-01 19 51983903 51983903 C A CEACAM18 Silent p.T184T 0.17 TCGA-05-4432-01 19 52376333 52376333 C A ZNF577 Nonsense_Mutation p.G304* 0.16 TCGA-05-4432-01 19 52394116 52394116 T C ZNF649 Missense_Mutation p.T425A 0.13 deleterious(0) probably_damaging(0.998) TCGA-05-4432-01 19 52520455 52520455 C A ZNF614 Missense_Mutation p.L132F 0.12 tolerated(0.22) benign(0.019) TCGA-05-4432-01 19 53612346 53612346 G T ZNF415 Missense_Mutation p.H318N 0.10 deleterious(0.01) probably_damaging(0.909) TCGA-05-4432-01 19 53770147 53770147 G T VN1R4 Missense_Mutation p.L258I 0.35 tolerated(0.08) benign(0.16) TCGA-05-4432-01 19 54444824 54444824 C T CACNG7 Silent p.Y175Y 0.14 TCGA-05-4432-01 19 55687098 55687098 A T SYT5 Missense_Mutation p.F173L 0.11 deleterious(0.01) probably_damaging(0.992) TCGA-05-4432-01 19 55689649 55689649 C T SYT5 Missense_Mutation p.R56Q 0.48 tolerated(0.68) benign(0.004) TCGA-05-4432-01 19 55817686 55817686 G T BRSK1 Missense_Mutation p.G653C 0.45 deleterious(0) probably_damaging(0.998) TCGA-05-4432-01 19 56303674 56303674 C A NLRP11 Nonsense_Mutation p.E836* 0.43 TCGA-05-4432-01 19 57132930 57132930 G T ZNF71 Missense_Mutation p.R92L 0.35 deleterious(0) benign(0.028) TCGA-05-4432-01 19 57326770 57326770 C A PEG3 Missense_Mutation p.D1014Y 0.12 deleterious(0) probably_damaging(0.971) TCGA-05-4432-01 19 57640419 57640419 C A USP29 Missense_Mutation p.L126M 0.11 deleterious(0.01) benign(0.135) TCGA-05-4432-01 19 57839579 57839579 C A ZNF543 Missense_Mutation p.T250N 0.15 deleterious(0) probably_damaging(0.996) TCGA-05-4432-01 19 58231742 58231742 G T ZNF671 3'UTR 0.10 TCGA-05-4432-01 19 58805952 58805952 A G ZNF8 Missense_Mutation p.T260A 0.22 tolerated(0.57) benign(0.008) TCGA-05-4432-01 19 59021298 59021298 T C SLC27A5 Missense_Mutation p.T325A 0.48 deleterious(0.03) benign(0.422) TCGA-05-4432-01 19 6755233 6755233 C T SH2D3A Missense_Mutation p.S197N 0.19 tolerated(0.08) benign(0.014) TCGA-05-4432-01 19 8038675 8038675 C G ELAVL1 Missense_Mutation p.V122L 0.16 tolerated(1) benign(0.013) TCGA-05-4432-01 1 10342421 10342421 G C KIF1B Intron 0.07 TCGA-05-4432-01 1 104297220 104297220 T C AMY1C Silent p.S326S 0.04 TCGA-05-4432-01 1 108303496 108303496 A T VAV3 Nonsense_Mutation p.C309* 0.14 TCGA-05-4432-01 1 109735309 109735309 A G KIAA1324 Missense_Mutation p.Y587C 0.15 tolerated(0.15) probably_damaging(0.917) TCGA-05-4432-01 1 109740147 109740147 G T KIAA1324 Nonsense_Mutation p.E725* 0.08 TCGA-05-4432-01 1 110085968 110085968 C A GPR61 Silent p.A108A 0.14 TCGA-05-4432-01 1 110883749 110883749 A T RBM15 Missense_Mutation p.R574S 0.19 tolerated(0.58) possibly_damaging(0.681) TCGA-05-4432-01 1 113232654 113232654 A T MOV10 Missense_Mutation p.K257M 0.33 deleterious(0) possibly_damaging(0.495) TCGA-05-4432-01 1 113242307 113242307 G C MOV10 Missense_Mutation p.V862L 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-05-4432-01 1 114189213 114189213 T G MAGI3 Missense_Mutation p.L702V 0.15 tolerated(0.12) possibly_damaging(0.855) TCGA-05-4432-01 1 116243770 116243770 G T CASQ2 3'UTR 0.11 TCGA-05-4432-01 1 117120124 117120124 T A IGSF3 Missense_Mutation p.Y1152F 0.16 deleterious(0) probably_damaging(0.918) TCGA-05-4432-01 1 120166657 120166657 G A ZNF697 Silent p.F103F 0.21 TCGA-05-4432-01 1 14107413 14107413 G A PRDM2 Missense_Mutation p.M1041I 0.18 unknown(0) TCGA-05-4432-01 1 149881030 149881030 A G SV2A Silent p.L425L 0.58 TCGA-05-4432-01 1 153749049 153749049 C G SLC27A3 Missense_Mutation p.H288Q 0.04 tolerated(0.51) benign(0.016) TCGA-05-4432-01 1 154317940 154317940 T A ATP8B2 Missense_Mutation p.F904L 0.04 deleterious(0.02) probably_damaging(0.984) TCGA-05-4432-01 1 155223710 155223710 C T FAM189B Silent p.S151S 0.48 TCGA-05-4432-01 1 155298032 155298032 G C RUSC1 Missense_Mutation p.E836Q 0.07 tolerated(0.15) benign(0.185) TCGA-05-4432-01 1 155701746 155701746 C G DAP3 Silent p.A305A 0.19 TCGA-05-4432-01 1 156351938 156351938 C - RHBG Frame_Shift_Del p.L354Sfs*26 0.20 TCGA-05-4432-01 1 156501027 156501027 C A IQGAP3 Silent p.L1372L 0.13 TCGA-05-4432-01 1 157485511 157485511 G T FCRL5 Missense_Mutation p.P963Q 0.09 deleterious(0.03) possibly_damaging(0.854) TCGA-05-4432-01 1 157485512 157485512 G T FCRL5 Missense_Mutation p.P963T 0.09 tolerated(0.3) benign(0.074) TCGA-05-4432-01 1 158326777 158326777 G T CD1E 3'Flank 0.57 TCGA-05-4432-01 1 158368475 158368475 C A OR10T2 Missense_Mutation p.R261L 0.09 deleterious(0) possibly_damaging(0.767) TCGA-05-4432-01 1 15888820 15888820 G A DNAJC16 Silent p.A446A 0.24 TCGA-05-4432-01 1 159166690 159166690 G T CADM3 Missense_Mutation p.Q298H 0.08 tolerated(0.08) benign(0.016) TCGA-05-4432-01 1 159175860 159175860 A T DARC Missense_Mutation p.T213S 0.04 tolerated(0.17) benign(0.01) TCGA-05-4432-01 1 160340530 160340530 C T NHLH1 Silent p.L3L 0.50 TCGA-05-4432-01 1 160523869 160523869 T A CD84 Silent p.T152T 0.04 TCGA-05-4432-01 1 161967727 161967727 G A OLFML2B Silent p.P454P 0.08 TCGA-05-4432-01 1 166991137 166991137 T A MAEL 3'UTR 0.51 TCGA-05-4432-01 1 167095983 167095983 G T DUSP27 Missense_Mutation p.D539Y 0.10 deleterious(0) probably_damaging(0.94) TCGA-05-4432-01 1 169484771 169484771 C G F5 Missense_Mutation p.E2147Q 0.09 deleterious(0) probably_damaging(0.977) TCGA-05-4432-01 1 169515796 169515796 G A F5 Missense_Mutation p.A549V 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-05-4432-01 1 171561144 171561144 C T PRRC2C 3'UTR 0.59 TCGA-05-4432-01 1 17279852 17279852 A G CROCC Missense_Mutation p.Q1021R 0.60 benign(0.018) TCGA-05-4432-01 1 175375870 175375870 G C TNR 5'UTR 0.52 TCGA-05-4432-01 1 176661380 176661380 T C PAPPA2 Silent p.P850P 0.16 TCGA-05-4432-01 1 17714922 17714922 C G PADI6 RNA 0.14 TCGA-05-4432-01 1 178426890 178426890 G T RASAL2 Silent p.L821L 0.08 TCGA-05-4432-01 1 179887338 179887338 A T TOR1AIP1 Missense_Mutation p.Q572H 0.10 tolerated(0.09) probably_damaging(0.998) TCGA-05-4432-01 1 180243566 180243566 C G LHX4 Missense_Mutation p.A342G 0.15 tolerated(0.62) benign(0.002) TCGA-05-4432-01 1 181741231 181741231 T C CACNA1E Missense_Mutation p.I1668T 0.47 deleterious(0) benign(0.415) TCGA-05-4432-01 1 186270816 186270816 C G PRG4 Missense_Mutation p.P98A 0.16 probably_damaging(0.933) TCGA-05-4432-01 1 186909161 186909161 A C PLA2G4A Missense_Mutation p.Q323P 0.11 deleterious(0.02) benign(0.125) TCGA-05-4432-01 1 190233997 190233997 T C BRINP3 Missense_Mutation p.K206E 0.32 deleterious(0) benign(0.081) TCGA-05-4432-01 1 1919949 1919949 A T C1orf222 Splice_Site p.X90_splice 0.25 TCGA-05-4432-01 1 197072642 197072642 G A ASPM Silent p.A1913A 0.16 TCGA-05-4432-01 1 200817337 200817337 A G CAMSAP2 Silent p.E480E 0.11 TCGA-05-4432-01 1 202920271 202920271 G A ADIPOR1 5'UTR 0.41 TCGA-05-4432-01 1 203185976 203185976 G T CHIT1 3'UTR 0.09 TCGA-05-4432-01 1 20474888 20474888 T A PLA2G2F Silent p.P210P 0.12 TCGA-05-4432-01 1 205589269 205589269 T A ELK4 Missense_Mutation p.D302V 0.05 tolerated(0.14) benign(0.091) TCGA-05-4432-01 1 206566979 206566979 C T SRGAP2 Silent p.T174T 0.10 TCGA-05-4432-01 1 209878314 209878314 C A HSD11B1 Silent p.L9L 0.11 TCGA-05-4432-01 1 209974608 209974608 C T IRF6 Missense_Mutation p.E51K 0.05 deleterious(0.01) probably_damaging(0.965) TCGA-05-4432-01 1 21009182 21009182 C A KIF17 Silent p.R809R 0.35 TCGA-05-4432-01 1 21071530 21071530 C A HP1BP3 Missense_Mutation p.Q474H 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.735) TCGA-05-4432-01 1 214819878 214819878 A C CENPF Missense_Mutation p.Q2322P 0.05 benign(0.001) TCGA-05-4432-01 1 215256635 215256635 C A KCNK2 5'UTR 0.41 TCGA-05-4432-01 1 216166438 216166438 G A USH2A Silent p.G2243G 0.11 TCGA-05-4432-01 1 220345290 220345290 A T RAB3GAP2 Missense_Mutation p.S840T 0.45 deleterious(0.01) benign(0.138) TCGA-05-4432-01 1 227073239 227073239 C T PSEN2 Silent p.L119L 0.38 TCGA-05-4432-01 1 227922419 227922419 C A JMJD4 Nonsense_Mutation p.E167* 0.07 TCGA-05-4432-01 1 22915542 22915542 G T EPHA8 Silent p.V386V 0.14 TCGA-05-4432-01 1 232607141 232607141 G T SIPA1L2 Missense_Mutation p.P740Q 0.16 deleterious(0) probably_damaging(0.995) TCGA-05-4432-01 1 232626781 232626781 C G SIPA1L2 Missense_Mutation p.E549Q 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-05-4432-01 1 236631557 236631557 C T EDARADD Silent p.S82S 0.22 TCGA-05-4432-01 1 237942011 237942011 T A RYR2 Missense_Mutation p.W3941R 0.07 probably_damaging(0.996) TCGA-05-4432-01 1 237965182 237965182 A T RYR2 Missense_Mutation p.Q4706L 0.08 possibly_damaging(0.728) TCGA-05-4432-01 1 237982399 237982399 G C RYR2 Missense_Mutation p.D4833H 0.17 probably_damaging(0.988) TCGA-05-4432-01 1 245912930 245912930 G T SMYD3 Missense_Mutation p.H408N 0.14 tolerated(0.07) benign(0.362) TCGA-05-4432-01 1 247654812 247654812 G T OR2W5 RNA 0.49 TCGA-05-4432-01 1 247752015 247752015 G T OR2G2 Silent p.P118P 0.12 TCGA-05-4432-01 1 247752598 247752598 G C OR2G2 Missense_Mutation p.G313R 0.25 tolerated(0.22) unknown(0) TCGA-05-4432-01 1 247921241 247921241 G T OR1C1 Silent p.A156A 0.12 TCGA-05-4432-01 1 248129413 248129413 G A OR2AK2 Silent p.L260L 0.34 TCGA-05-4432-01 1 248129470 248129470 C T OR2AK2 Silent p.S279S 0.40 TCGA-05-4432-01 1 248224139 248224139 C T OR2L3 Silent p.T52T 0.06 TCGA-05-4432-01 1 248263030 248263030 C A OR2L13 Missense_Mutation p.A118D 0.11 deleterious(0) possibly_damaging(0.842) TCGA-05-4432-01 1 248263031 248263031 C A OR2L13 Silent p.A118A 0.11 TCGA-05-4432-01 1 248308564 248308564 T A OR2M5 Missense_Mutation p.F39I 0.21 tolerated(0.15) benign(0.005) TCGA-05-4432-01 1 248402946 248402946 C A OR2M4 Missense_Mutation p.T239N 0.16 deleterious(0) possibly_damaging(0.71) TCGA-05-4432-01 1 248637034 248637034 A G OR2T3 Missense_Mutation p.Y128C 0.12 deleterious(0) probably_damaging(0.998) TCGA-05-4432-01 1 26371545 26371545 G A SLC30A2 Missense_Mutation p.R72C 0.04 deleterious(0.03) benign(0.063) TCGA-05-4432-01 1 26509068 26509068 G T CNKSR1 Missense_Mutation p.S206I 0.34 deleterious(0.02) benign(0.052) TCGA-05-4432-01 1 29618378 29618378 C T PTPRU Intron 0.35 TCGA-05-4432-01 1 35227242 35227242 G A GJB4 Nonsense_Mutation p.W129* 0.26 TCGA-05-4432-01 1 37356618 37356619 - A GRIK3 Frame_Shift_Ins p.I66Hfs*17 0.15 TCGA-05-4432-01 1 41978593 41978593 C A HIVEP3 Missense_Mutation p.G2100V 0.32 benign(0.202) TCGA-05-4432-01 1 47279694 47279694 G T CYP4B1 Missense_Mutation p.R245L 0.28 tolerated(0.08) possibly_damaging(0.545) TCGA-05-4432-01 1 67591503 67591503 A T C1orf141 Silent p.A55A 0.13 TCGA-05-4432-01 1 74648512 74648512 C G LRRIQ3 Missense_Mutation p.G95R 0.12 tolerated(0.07) benign(0.208) TCGA-05-4432-01 1 75107077 75107077 G T C1orf173 Missense_Mutation p.P128T 0.17 deleterious(0) possibly_damaging(0.842) TCGA-05-4432-01 1 75608902 75608902 C A LHX8 Silent p.A163A 0.25 TCGA-05-4432-01 1 75681537 75681537 G C SLC44A5 Missense_Mutation p.Q544E 0.17 tolerated(0.4) benign(0.029) TCGA-05-4432-01 1 75693506 75693506 T G SLC44A5 Missense_Mutation p.Q297P 0.09 deleterious(0.01) possibly_damaging(0.514) TCGA-05-4432-01 1 76355032 76355032 C T MSH4 Missense_Mutation p.T735I 0.14 deleterious(0) probably_damaging(0.98) TCGA-05-4432-01 1 78098720 78098720 C T ZZZ3 Missense_Mutation p.R107K 0.13 tolerated(0.41) benign(0.003) TCGA-05-4432-01 1 90484244 90484244 G T ZNF326 Nonsense_Mutation p.E359* 0.17 TCGA-05-4432-01 1 91740287 91740287 C G HFM1 Missense_Mutation p.R1223T 0.12 deleterious(0) possibly_damaging(0.726) TCGA-05-4432-01 1 91742226 91742226 T A HFM1 Missense_Mutation p.R1183W 0.15 deleterious(0) probably_damaging(0.999) TCGA-05-4432-01 20 2375141 2375141 C G TGM6 Silent p.G17G 0.09 TCGA-05-4432-01 20 30784356 30784356 C G PLAGL2 Missense_Mutation p.G464R 0.07 tolerated(0.51) possibly_damaging(0.543) TCGA-05-4432-01 20 34060658 34060658 T A CEP250 Splice_Site p.X403_splice 0.15 TCGA-05-4432-01 20 34241207 34241207 A G RBM12 Missense_Mutation p.S680P 0.31 tolerated_low_confidence(0.3) benign(0.064) TCGA-05-4432-01 20 34242230 34242230 C A RBM12 Missense_Mutation p.V339L 0.11 tolerated(0.67) benign(0.009) TCGA-05-4432-01 20 35236149 35236149 G T C20orf24 Missense_Mutation p.R49L 0.12 deleterious(0) probably_damaging(0.999) TCGA-05-4432-01 20 35783522 35783522 C G MROH8 Missense_Mutation p.A367P 0.06 deleterious(0.01) probably_damaging(0.963) TCGA-05-4432-01 20 3652889 3652889 G T ADAM33 Missense_Mutation p.P497T 0.13 tolerated(0.34) benign(0.219) TCGA-05-4432-01 20 4202311 4202311 C G ADRA1D Silent p.A526A 0.19 TCGA-05-4432-01 20 42747215 42747215 C T JPH2 Silent p.L406L 0.09 TCGA-05-4432-01 20 45358027 45358027 G C SLC2A10 Missense_Mutation p.G483R 0.07 deleterious(0) probably_damaging(1) TCGA-05-4432-01 20 46305851 46305851 G T SULF2 Silent p.V407V 0.29 TCGA-05-4432-01 20 4770302 4770302 G T RASSF2 Silent p.V193V 0.22 TCGA-05-4432-01 20 4837573 4837573 C T SLC23A2 3'UTR 0.38 TCGA-05-4432-01 20 5081562 5081562 C A TMEM230 Missense_Mutation p.V143F 0.38 tolerated(0.72) benign(0.033) TCGA-05-4432-01 20 57766576 57766576 G T ZNF831 Missense_Mutation p.G168C 0.08 deleterious(0) probably_damaging(1) TCGA-05-4432-01 20 61542867 61542867 G A DIDO1 Missense_Mutation p.T33I 0.12 probably_damaging(0.999) TCGA-05-4432-01 20 61990962 61990962 C A CHRNA4 Missense_Mutation p.A56S 0.13 tolerated(0.41) possibly_damaging(0.704) TCGA-05-4432-01 20 61991018 61991018 T A CHRNA4 Missense_Mutation p.E37V 0.12 deleterious(0) possibly_damaging(0.555) TCGA-05-4432-01 20 62421331 62421331 A T ZBTB46 Silent p.A260A 0.09 TCGA-05-4432-01 20 629553 629553 T A RP5-850E9.3 Nonsense_Mutation p.R78* 0.08 TCGA-05-4432-01 20 7963259 7963259 C T TMX4 Missense_Mutation p.R230Q 0.11 tolerated(0.83) benign(0.001) TCGA-05-4432-01 21 19685299 19685299 G T TMPRSS15 Missense_Mutation p.Q710K 0.24 tolerated(0.12) benign(0.021) TCGA-05-4432-01 21 31655228 31655228 G T KRTAP24-1 Missense_Mutation p.T8N 0.27 deleterious(0.02) benign(0.38) TCGA-05-4432-01 21 31813044 31813044 G T KRTAP15-1 Missense_Mutation p.Q133H 0.29 tolerated(0.11) benign(0.4) TCGA-05-4432-01 21 32253873 32253873 G C KRTAP11-1 5'UTR 0.20 TCGA-05-4432-01 21 34640770 34640770 G T AP000295.9 Nonsense_Mutation p.E169* 0.17 TCGA-05-4432-01 21 38853123 38853123 G T DYRK1A Nonsense_Mutation p.G171* 0.27 TCGA-05-4432-01 21 45833845 45833845 G T TRPM2 Missense_Mutation p.D1012Y 0.12 deleterious(0.01) probably_damaging(0.981) TCGA-05-4432-01 21 47421898 47421898 G A COL6A1 Silent p.A660A 0.21 TCGA-05-4432-01 22 17662300 17662300 G A CECR1 3'UTR 0.25 TCGA-05-4432-01 22 20819222 20819222 C A KLHL22 Silent p.A345A 0.20 TCGA-05-4432-01 22 22724195 22724195 G A IGLV7-46 Missense_Mutation p.V31M 0.21 TCGA-05-4432-01 22 31484883 31484883 C T SMTN Silent p.Y133Y 0.19 TCGA-05-4432-01 22 33260911 33260911 A G SYN3 Silent p.H234H 0.18 TCGA-05-4432-01 22 35779116 35779116 C A HMOX1 Nonsense_Mutation p.S14* 0.13 TCGA-05-4432-01 22 37326508 37326508 C A CSF2RB Missense_Mutation p.S270R 0.04 tolerated(0.17) benign(0.063) TCGA-05-4432-01 22 46656286 46656286 C T PKDREJ Silent p.L978L 0.24 TCGA-05-4432-01 22 46708079 46708079 C T GTSE1 Silent p.I268I 0.20 TCGA-05-4432-01 2 107032375 107032375 A C RGPD3 Missense_Mutation p.S1665R 0.15 deleterious_low_confidence(0) benign(0.005) TCGA-05-4432-01 2 108489115 108489115 G T RGPD4 Missense_Mutation p.S1552I 0.16 deleterious(0) probably_damaging(0.973) TCGA-05-4432-01 2 110310790 110310790 T C SEPT10 Silent p.Q345Q 0.15 TCGA-05-4432-01 2 113513676 113513676 C A CKAP2L Missense_Mutation p.K424N 0.15 tolerated(0.11) benign(0.134) TCGA-05-4432-01 2 118588360 118588360 G T DDX18 3'UTR 0.06 TCGA-05-4432-01 2 125175123 125175123 G A CNTNAP5 Missense_Mutation p.S162N 0.29 tolerated(0.93) benign(0.007) TCGA-05-4432-01 2 125284984 125284984 C A CNTNAP5 Missense_Mutation p.L533M 0.31 tolerated(0.07) benign(0.303) TCGA-05-4432-01 2 130897872 130897872 C T CCDC74B Missense_Mutation p.M252I 0.35 tolerated(0.52) benign(0.023) TCGA-05-4432-01 2 135738353 135738353 G C MAP3K19 Intron 0.21 TCGA-05-4432-01 2 136633884 136633884 C T MCM6 Missense_Mutation p.V18I 0.10 tolerated(0.08) benign(0.021) TCGA-05-4432-01 2 141108580 141108580 G T LRP1B Missense_Mutation p.A3893D 0.32 possibly_damaging(0.665) TCGA-05-4432-01 2 141528458 141528458 G T LRP1B Nonsense_Mutation p.S1873* 0.26 TCGA-05-4432-01 2 143913162 143913162 C G ARHGAP15 Missense_Mutation p.H35D 0.10 tolerated(0.41) benign(0.013) TCGA-05-4432-01 2 150061878 150061878 C A LYPD6B Silent p.A63A 0.31 TCGA-05-4432-01 2 160862202 160862202 C A PLA2R1 Nonsense_Mutation p.E599* 0.36 TCGA-05-4432-01 2 162274732 162274732 C A TBR1 Missense_Mutation p.P290T 0.18 deleterious(0) probably_damaging(0.991) TCGA-05-4432-01 2 163292062 163292062 G T KCNH7 Missense_Mutation p.L534I 0.09 deleterious(0) probably_damaging(0.973) TCGA-05-4432-01 2 163361078 163361078 G C KCNH7 Missense_Mutation p.L335V 0.32 tolerated(0.34) benign(0.024) TCGA-05-4432-01 2 170009461 170009461 G A LRP2 Silent p.Y4103Y 0.26 TCGA-05-4432-01 2 170403036 170403036 C A FASTKD1 Missense_Mutation p.D465Y 0.12 deleterious(0) probably_damaging(0.959) TCGA-05-4432-01 2 179429980 179429980 G C TTN Missense_Mutation p.T26960R 0.19 TCGA-05-4432-01 2 179432976 179432976 G A TTN Silent p.Y25961Y 0.12 TCGA-05-4432-01 2 179440938 179440938 C A TTN Missense_Mutation p.Q23307H 0.11 TCGA-05-4432-01 2 179468621 179468621 C A TTN Missense_Mutation p.V18265F 0.22 TCGA-05-4432-01 2 179584410 179584410 T C TTN Missense_Mutation p.I7937V 0.09 TCGA-05-4432-01 2 179616645 179616645 A C TTN Intron 0.04 TCGA-05-4432-01 2 179659835 179659835 G A TTN Silent p.S353S 0.11 TCGA-05-4432-01 2 18112296 18112296 C T KCNS3 Silent p.F7F 0.33 TCGA-05-4432-01 2 182339715 182339715 G T ITGA4 Missense_Mutation p.K116N 0.24 deleterious(0.04) possibly_damaging(0.856) TCGA-05-4432-01 2 185803479 185803479 C A ZNF804A Missense_Mutation p.A1119E 0.41 deleterious(0) probably_damaging(0.986) TCGA-05-4432-01 2 189862452 189862452 A G COL3A1 Silent p.T632T 0.08 TCGA-05-4432-01 2 198949581 198949581 G T PLCL1 Missense_Mutation p.S447I 0.05 deleterious(0.02) benign(0.288) TCGA-05-4432-01 2 207173670 207173670 A T ZDBF2 Missense_Mutation p.Y1473F 0.10 tolerated(0.14) benign(0.153) TCGA-05-4432-01 2 211421526 211421526 G T CPS1 Silent p.V29V 0.18 TCGA-05-4432-01 2 211504752 211504752 G A CPS1 Missense_Mutation p.M982I 0.10 tolerated(0.37) benign(0.001) TCGA-05-4432-01 2 212248650 212248650 G A ERBB4 Missense_Mutation p.P1206L 0.11 deleterious(0) benign(0.046) TCGA-05-4432-01 2 21227177 21227177 G A APOB Silent p.D4017D 0.24 TCGA-05-4432-01 2 214794784 214794784 G T SPAG16 Missense_Mutation p.V439L 0.12 deleterious(0.01) probably_damaging(0.957) TCGA-05-4432-01 2 217123992 217123992 G T MARCH4 3'UTR 0.09 TCGA-05-4432-01 2 219692035 219692035 G A PRKAG3 Missense_Mutation p.P313S 0.10 tolerated(0.08) probably_damaging(0.911) TCGA-05-4432-01 2 220379622 220379622 G T ASIC4 Missense_Mutation p.G186V 0.27 tolerated(0.53) benign(0.1) TCGA-05-4432-01 2 222291250 222291250 C A EPHA4 Missense_Mutation p.R927L 0.07 deleterious(0) probably_damaging(0.982) TCGA-05-4432-01 2 224462854 224462854 G A SCG2 Missense_Mutation p.R383W 0.24 deleterious(0) possibly_damaging(0.72) TCGA-05-4432-01 2 227660130 227660130 T A IRS1 Missense_Mutation p.S1109C 0.19 deleterious(0) benign(0.28) TCGA-05-4432-01 2 227983373 227983373 T A COL4A4 Silent p.P159P 0.06 TCGA-05-4432-01 2 229890500 229890500 C A PID1 Nonsense_Mutation p.E199* 0.10 TCGA-05-4432-01 2 231036855 231036855 C A SP110 Missense_Mutation p.R581M 0.35 deleterious(0) possibly_damaging(0.702) TCGA-05-4432-01 2 231177387 231177387 T A SP140 Missense_Mutation p.N864K 0.11 deleterious(0) probably_damaging(0.993) TCGA-05-4432-01 2 233399022 233399022 C A CHRND Missense_Mutation p.N447K 0.23 tolerated(0.79) benign(0.004) TCGA-05-4432-01 2 235951690 235951690 G T SH3BP4 Missense_Mutation p.R759S 0.23 tolerated(0.08) possibly_damaging(0.78) TCGA-05-4432-01 2 238672084 238672084 C T LRRFIP1 Silent p.N576N 0.15 TCGA-05-4432-01 2 239974820 239974820 C A HDAC4 Missense_Mutation p.E1076D 0.17 deleterious(0) unknown(0) TCGA-05-4432-01 2 241727624 241727624 C A KIF1A Silent p.S69S 0.32 TCGA-05-4432-01 2 242035205 242035205 G C MTERFD2 3'UTR 0.46 TCGA-05-4432-01 2 242142826 242142826 C A ANO7 Missense_Mutation p.R322S 0.50 tolerated(0.07) benign(0.409) TCGA-05-4432-01 2 27608704 27608704 T A PPM1G Missense_Mutation p.T107S 0.15 tolerated(0.58) possibly_damaging(0.621) TCGA-05-4432-01 2 29917880 29917880 C A ALK Missense_Mutation p.G263V 0.25 tolerated(0.09) benign(0.01) TCGA-05-4432-01 2 29917881 29917881 C T ALK Splice_Site p.X263_splice 0.24 TCGA-05-4432-01 2 33359867 33359867 C A LTBP1 Missense_Mutation p.N347K 0.12 deleterious(0) probably_damaging(0.991) TCGA-05-4432-01 2 33359868 33359868 C A LTBP1 Missense_Mutation p.H348N 0.12 tolerated(0.24) possibly_damaging(0.889) TCGA-05-4432-01 2 40657101 40657101 G A SLC8A1 Missense_Mutation p.T107I 0.13 deleterious(0) probably_damaging(0.999) TCGA-05-4432-01 2 48872251 48872251 T C STON1-GTF2A1L Missense_Mutation p.V832A 0.04 tolerated(1) benign(0) TCGA-05-4432-01 2 50765619 50765619 C T NRXN1 Missense_Mutation p.G679S 0.15 deleterious(0) probably_damaging(1) TCGA-05-4432-01 2 60687791 60687791 C T BCL11A Silent p.K752K 0.35 TCGA-05-4432-01 2 69207975 69207975 A G GKN1 3'UTR 0.22 TCGA-05-4432-01 2 71766288 71766288 G T DYSF Missense_Mutation p.D499Y 0.08 deleterious(0) probably_damaging(0.985) TCGA-05-4432-01 2 73449044 73449044 G T SMYD5 Nonsense_Mutation p.G210* 0.11 TCGA-05-4432-01 2 76975799 76975799 C A LRRTM4 3'UTR 0.26 TCGA-05-4432-01 2 77746271 77746271 G T LRRTM4 Missense_Mutation p.R242S 0.10 tolerated(0.58) possibly_damaging(0.842) TCGA-05-4432-01 2 79254299 79254299 T A REG3G Splice_Site p.X111_splice 0.08 TCGA-05-4432-01 2 79384785 79384785 T A REG3A Missense_Mutation p.S125C 0.05 deleterious(0.04) possibly_damaging(0.654) TCGA-05-4432-01 2 80136743 80136743 G C CTNNA2 Missense_Mutation p.M292I 0.13 tolerated(0.21) benign(0.003) TCGA-05-4432-01 2 90108837 90108837 T A IGKV6D-41 Silent p.T34T 0.07 TCGA-05-4432-01 2 90212103 90212103 G T IGKV3D-11 Missense_Mutation p.R65S 0.29 deleterious(0) possibly_damaging(0.793) TCGA-05-4432-01 2 96799710 96799710 T C ASTL Missense_Mutation p.K111E 0.38 tolerated(0.34) benign(0.071) TCGA-05-4432-01 2 96993504 96993504 C T ITPRIPL1 Silent p.L387L 0.11 TCGA-05-4432-01 2 97427550 97427550 G T CNNM4 Missense_Mutation p.V272L 0.07 deleterious(0.04) probably_damaging(0.934) TCGA-05-4432-01 3 100058049 100058049 G T NIT2 Silent p.P42P 0.13 TCGA-05-4432-01 3 101446312 101446312 G A CEP97 Missense_Mutation p.S91N 0.10 deleterious(0.02) possibly_damaging(0.686) TCGA-05-4432-01 3 105464841 105464841 C A CBLB Silent p.V255V 0.12 TCGA-05-4432-01 3 108778676 108778676 T C MORC1 Silent p.Q336Q 0.25 TCGA-05-4432-01 3 112719871 112719871 C G GTPBP8 3'UTR 0.13 TCGA-05-4432-01 3 114070473 114070473 A C ZBTB20 Missense_Mutation p.V151G 0.10 deleterious(0) probably_damaging(0.981) TCGA-05-4432-01 3 119886498 119886498 C A GPR156 Missense_Mutation p.R609L 0.35 tolerated(0.1) benign(0.174) TCGA-05-4432-01 3 121980969 121980969 G T CASR Missense_Mutation p.G363C 0.36 deleterious(0) possibly_damaging(0.612) TCGA-05-4432-01 3 123066664 123066664 G C ADCY5 Missense_Mutation p.F457L 0.11 deleterious(0.02) benign(0.417) TCGA-05-4432-01 3 13545601 13545601 C G HDAC11 Missense_Mutation p.I219M 0.12 deleterious(0.04) probably_damaging(1) TCGA-05-4432-01 3 143704422 143704422 A G C3orf58 Missense_Mutation p.Y232C 0.04 deleterious(0) probably_damaging(0.983) TCGA-05-4432-01 3 164767613 164767613 A T SI Missense_Mutation p.N521K 0.15 tolerated(0.7) benign(0.004) TCGA-05-4432-01 3 167322097 167322097 T C WDR49 Missense_Mutation p.N32S 0.25 deleterious(0) probably_damaging(0.977) TCGA-05-4432-01 3 167401998 167401998 G A PDCD10 3'UTR 0.45 TCGA-05-4432-01 3 167728076 167728076 T A GOLIM4 Missense_Mutation p.H691L 0.28 deleterious_low_confidence(0.01) benign(0.343) TCGA-05-4432-01 3 183682981 183682981 G A ABCC5 Silent p.L675L 0.23 TCGA-05-4432-01 3 186961390 186961390 T A MASP1 Silent p.P370P 0.06 TCGA-05-4432-01 3 36763072 36763072 A G DCLK3 Missense_Mutation p.F511L 0.04 deleterious(0.01) possibly_damaging(0.512) TCGA-05-4432-01 3 39374243 39374243 G A CCR8 Missense_Mutation p.A141T 0.14 deleterious(0.01) possibly_damaging(0.85) TCGA-05-4432-01 3 39374244 39374244 C A CCR8 Missense_Mutation p.A141D 0.14 deleterious(0) probably_damaging(0.952) TCGA-05-4432-01 3 44776034 44776034 C T ZNF501 Nonsense_Mutation p.Q41* 0.11 TCGA-05-4432-01 3 44794741 44794741 A C KIAA1143 3'UTR 0.21 TCGA-05-4432-01 3 44951615 44951615 C T TGM4 Missense_Mutation p.A454V 0.15 deleterious(0) probably_damaging(0.989) TCGA-05-4432-01 3 46945140 46945140 C A PTH1R Silent p.V592V 0.18 TCGA-05-4432-01 3 52505828 52505828 A G NISCH Splice_Site p.X137_splice 0.28 TCGA-05-4432-01 3 58383335 58383335 T - PXK Frame_Shift_Del p.L330Wfs*16 0.15 TCGA-05-4432-01 3 69168667 69168667 T C LMOD3 Missense_Mutation p.K280R 0.16 tolerated(0.07) possibly_damaging(0.831) TCGA-05-4432-01 3 87325585 87325585 C A POU1F1 Missense_Mutation p.D10Y 0.15 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-05-4432-01 3 88202561 88202561 G A C3orf38 Silent p.L105L 0.41 TCGA-05-4432-01 3 95374256 95374256 G A MTHFD2P1 RNA 0.13 TCGA-05-4432-01 3 96963115 96963115 G T EPHA6 Silent p.V530V 0.08 TCGA-05-4432-01 3 97868307 97868307 C A OR5H14 Silent p.P26P 0.12 TCGA-05-4432-01 3 97868308 97868308 C T OR5H14 Silent p.L27L 0.12 TCGA-05-4432-01 3 9788023 9788023 C T BRPF1 Missense_Mutation p.H1122Y 0.20 deleterious(0) benign(0.276) TCGA-05-4432-01 3 97887756 97887756 T C OR5H15 Silent p.A71A 0.19 TCGA-05-4432-01 4 100237263 100237263 G T ADH1B Missense_Mutation p.P120H 0.39 tolerated(0.26) benign(0.004) TCGA-05-4432-01 4 106861316 106861316 G C NPNT Missense_Mutation p.C227S 0.15 deleterious(0) probably_damaging(1) TCGA-05-4432-01 4 108552980 108552980 C A PAPSS1 Missense_Mutation p.A515S 0.15 deleterious(0.03) probably_damaging(0.961) TCGA-05-4432-01 4 109672168 109672168 C A ETNPPL Missense_Mutation p.A209S 0.35 deleterious(0.02) probably_damaging(0.962) TCGA-05-4432-01 4 115760594 115760594 T C NDST4 Silent p.L742L 0.06 TCGA-05-4432-01 4 126412916 126412916 A G FAT4 Missense_Mutation p.Y4980C 0.12 benign(0.01) TCGA-05-4432-01 4 13338961 13338961 C T HSP90AB2P RNA 0.28 TCGA-05-4432-01 4 134072018 134072018 G T PCDH10 Silent p.L241L 0.10 TCGA-05-4432-01 4 134072783 134072783 C A PCDH10 Silent p.A496A 0.15 TCGA-05-4432-01 4 134073068 134073068 C A PCDH10 Silent p.P591P 0.46 TCGA-05-4432-01 4 139981626 139981626 C A ELF2 Missense_Mutation p.V325F 0.16 deleterious(0.02) possibly_damaging(0.522) TCGA-05-4432-01 4 146059084 146059085 - T OTUD4 Frame_Shift_Ins p.T883Nfs*31 0.21 TCGA-05-4432-01 4 151504393 151504393 C A MAB21L2 Missense_Mutation p.P71H 0.39 deleterious(0) probably_damaging(0.976) TCGA-05-4432-01 4 155670387 155670387 G T LRAT 3'UTR 0.11 TCGA-05-4432-01 4 156135336 156135336 G C NPY2R Missense_Mutation p.R82P 0.10 deleterious(0) probably_damaging(0.945) TCGA-05-4432-01 4 164534637 164534637 C T MARCH1 Intron 0.43 TCGA-05-4432-01 4 164534642 164534642 G T MARCH1 Intron 0.41 TCGA-05-4432-01 4 177241368 177241368 G C SPCS3 Missense_Mutation p.M47I 0.26 tolerated(0.62) benign(0.002) TCGA-05-4432-01 4 186320857 186320857 T A ANKRD37 Missense_Mutation p.C136S 0.12 tolerated(0.28) benign(0.015) TCGA-05-4432-01 4 265785 265785 A T ZNF732 Silent p.I287I 0.12 TCGA-05-4432-01 4 46067560 46067560 G A GABRG1 Silent p.D121D 0.28 TCGA-05-4432-01 4 46252443 46252443 C A GABRA2 Missense_Mutation p.S413I 0.11 deleterious(0) probably_damaging(0.991) TCGA-05-4432-01 4 47570994 47570994 T A ATP10D Silent p.I998I 0.16 TCGA-05-4432-01 4 47663813 47663813 C A CORIN Missense_Mutation p.Q550H 0.23 deleterious(0) probably_damaging(0.997) TCGA-05-4432-01 4 48073614 48073616 TAG AT TXK Frame_Shift_Del p.A478Dfs*80 0.20 TCGA-05-4432-01 4 48158716 48158716 T A TEC Missense_Mutation p.E258V 0.06 deleterious(0) possibly_damaging(0.794) TCGA-05-4432-01 4 54231430 54231430 A C SCFD2 Missense_Mutation p.C227G 0.12 deleterious(0.01) possibly_damaging(0.649) TCGA-05-4432-01 4 62775373 62775373 G T LPHN3 Silent p.R593R 0.47 TCGA-05-4432-01 4 65146765 65146765 G T TECRL Missense_Mutation p.L320M 0.36 deleterious(0) probably_damaging(0.998) TCGA-05-4432-01 4 68499973 68499973 T G UBA6 Missense_Mutation p.E667A 0.22 deleterious(0.01) benign(0.001) TCGA-05-4432-01 4 69796477 69796477 G T UGT2A3 Missense_Mutation p.P364H 0.20 deleterious(0) probably_damaging(0.996) TCGA-05-4432-01 4 70066153 70066153 C T UGT2B11 3'UTR 0.09 TCGA-05-4432-01 4 70160485 70160485 C T UGT2B28 Silent p.F516F 0.05 TCGA-05-4432-01 4 70460881 70460881 A G UGT2A1 Silent p.L527L 0.24 TCGA-05-4432-01 4 74008402 74008402 C G ANKRD17 Silent p.V680V 0.04 TCGA-05-4432-01 4 74735400 74735400 A G CXCL1 Missense_Mutation p.T39A 0.10 tolerated(0.3) benign(0.062) TCGA-05-4432-01 4 81967195 81967195 G T BMP3 Missense_Mutation p.R207M 0.09 deleterious(0.01) possibly_damaging(0.886) TCGA-05-4432-01 4 84391519 84391519 G C FAM175A Missense_Mutation p.H105D 0.04 deleterious(0.04) benign(0.281) TCGA-05-4432-01 4 94343933 94343933 T C GRID2 Silent p.F453F 0.32 TCGA-05-4432-01 4 96762021 96762021 C G PDHA2 Nonsense_Mutation p.Y240* 0.14 TCGA-05-4432-01 5 10442407 10442408 - G ROPN1L Frame_Shift_Ins 0.11 TCGA-05-4432-01 5 110459821 110459822 - T WDR36 Frame_Shift_Ins p.G819Wfs*14 0.13 TCGA-05-4432-01 5 131606626 131606626 A T PDLIM4 Missense_Mutation p.S116C 0.21 tolerated(0.09) possibly_damaging(0.88) TCGA-05-4432-01 5 13824339 13824339 C A DNAH5 Missense_Mutation p.R2183L 0.21 benign(0.25) TCGA-05-4432-01 5 139216500 139216500 T C PSD2 Missense_Mutation p.L503P 0.20 deleterious(0) probably_damaging(0.99) TCGA-05-4432-01 5 140181570 140181570 C T PCDHA3 Missense_Mutation p.T263I 0.21 deleterious_low_confidence(0.05) benign(0.016) TCGA-05-4432-01 5 140207847 140207847 G T PCDHA6 Silent p.A57A 0.09 TCGA-05-4432-01 5 140215062 140215062 C A PCDHA7 Missense_Mutation p.P365Q 0.15 tolerated_low_confidence(0.28) benign(0.023) TCGA-05-4432-01 5 140503432 140503432 G C PCDHB4 Missense_Mutation p.A618P 0.11 tolerated_low_confidence(0.09) benign(0.098) TCGA-05-4432-01 5 140552708 140552708 C A PCDHB7 Missense_Mutation p.P98T 0.07 tolerated_low_confidence(0.13) benign(0.005) TCGA-05-4432-01 5 140557913 140557913 A G PCDHB8 Missense_Mutation p.T100A 0.07 tolerated_low_confidence(0.1) benign(0.005) TCGA-05-4432-01 5 140710430 140710430 C A PCDHGA1 Missense_Mutation p.A60E 0.12 tolerated_low_confidence(0.09) benign(0.049) TCGA-05-4432-01 5 140725293 140725293 C T PCDHGA3 Missense_Mutation p.P565S 0.14 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-05-4432-01 5 140740422 140740422 A C PCDHGB2 Silent p.P240P 0.23 TCGA-05-4432-01 5 140745978 140745978 T C PCDHGA5 Missense_Mutation p.V694A 0.04 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-05-4432-01 5 147818033 147818033 G A FBXO38 Missense_Mutation p.R924H 0.24 deleterious(0) probably_damaging(0.978) TCGA-05-4432-01 5 150947284 150947284 A G FAT2 Silent p.N403N 0.14 TCGA-05-4432-01 5 151173720 151173720 G T G3BP1 Missense_Mutation p.G118W 0.06 deleterious(0) probably_damaging(0.985) TCGA-05-4432-01 5 156186354 156186354 G T SGCD Missense_Mutation p.A276S 0.14 tolerated(0.07) possibly_damaging(0.829) TCGA-05-4432-01 5 15928063 15928063 C A FBXL7 Silent p.L64L 0.09 TCGA-05-4432-01 5 173376573 173376573 G T CPEB4 Nonsense_Mutation p.E507* 0.06 TCGA-05-4432-01 5 36985213 36985213 T C NIPBL Missense_Mutation p.V644A 0.17 tolerated_low_confidence(0.53) benign(0.001) TCGA-05-4432-01 5 38370435 38370435 C T EGFLAM Missense_Mutation p.R195W 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.846) TCGA-05-4432-01 5 38445800 38445800 C G EGFLAM Silent p.L828L 0.13 TCGA-05-4432-01 5 482784 482784 C T SLC9A3 Missense_Mutation p.G412E 0.20 deleterious(0) probably_damaging(1) TCGA-05-4432-01 5 5190192 5190192 C A ADAMTS16 Missense_Mutation p.L386M 0.16 deleterious(0) probably_damaging(1) TCGA-05-4432-01 5 76326695 76326695 A T AGGF1 Missense_Mutation p.E35V 0.09 deleterious(0) possibly_damaging(0.879) TCGA-05-4432-01 5 870664 870664 G A BRD9 Silent p.S483S 0.29 TCGA-05-4432-01 5 9122842 9122842 G A SEMA5A Silent p.S569S 0.17 TCGA-05-4432-01 5 94727200 94727200 C A FAM81B Missense_Mutation p.A36E 0.13 deleterious_low_confidence(0.02) benign(0.027) TCGA-05-4432-01 6 101053528 101053528 T A ASCC3 Missense_Mutation p.Q1698L 0.12 tolerated(0.06) benign(0.313) TCGA-05-4432-01 6 10398916 10398916 C A TFAP2A Missense_Mutation p.D350Y 0.16 deleterious(0) probably_damaging(0.994) TCGA-05-4432-01 6 114378677 114378677 G T HS3ST5 Missense_Mutation p.P262H 0.26 deleterious(0) probably_damaging(1) TCGA-05-4432-01 6 117114013 117114013 A T GPRC6A Missense_Mutation p.D691E 0.25 tolerated(0.06) benign(0.139) TCGA-05-4432-01 6 118475609 118475609 G T SLC35F1 Nonsense_Mutation p.E59* 0.07 TCGA-05-4432-01 6 127775032 127775032 C A KIAA0408 Missense_Mutation p.W32L 0.09 deleterious(0) probably_damaging(0.999) TCGA-05-4432-01 6 127775126 127775126 T G KIAA0408 Translation_Start_Site p.M1? 0.09 deleterious(0.01) possibly_damaging(0.73) TCGA-05-4432-01 6 129571288 129571288 C A LAMA2 Missense_Mutation p.T605N 0.36 deleterious(0) benign(0.145) TCGA-05-4432-01 6 129571289 129571289 C A LAMA2 Silent p.T605T 0.36 TCGA-05-4432-01 6 129833584 129833584 G A LAMA2 Silent p.L2978L 0.09 TCGA-05-4432-01 6 13206311 13206311 G A PHACTR1 Missense_Mutation p.C310Y 0.14 deleterious(0.02) benign(0.35) TCGA-05-4432-01 6 132891677 132891677 T C TAAR6 Missense_Mutation p.S73P 0.22 deleterious(0) probably_damaging(0.991) TCGA-05-4432-01 6 136597009 136597009 C A BCLAF1 Missense_Mutation p.A552S 0.07 tolerated(0.73) possibly_damaging(0.567) TCGA-05-4432-01 6 143091689 143091689 C A HIVEP2 Missense_Mutation p.G1396V 0.10 deleterious(0) probably_damaging(1) TCGA-05-4432-01 6 143091690 143091690 C A HIVEP2 Missense_Mutation p.G1396W 0.11 deleterious(0) probably_damaging(1) TCGA-05-4432-01 6 144863971 144863971 A T UTRN Missense_Mutation p.Q2187L 0.07 tolerated(0.13) benign(0.001) TCGA-05-4432-01 6 148855994 148855994 A C SASH1 Missense_Mutation p.R684S 0.24 deleterious(0) probably_damaging(0.964) TCGA-05-4432-01 6 149700627 149700627 G T TAB2 Nonsense_Mutation p.G526* 0.29 TCGA-05-4432-01 6 15524604 15524604 C A DTNBP1 Intron 0.11 TCGA-05-4432-01 6 167754801 167754801 G A TTLL2 Silent p.V471V 0.13 TCGA-05-4432-01 6 18166609 18166609 G T KDM1B Missense_Mutation p.W139C 0.16 deleterious(0) probably_damaging(0.999) TCGA-05-4432-01 6 24357729 24357729 C A DCDC2 Missense_Mutation p.G84C 0.18 tolerated(0.13) probably_damaging(0.951) TCGA-05-4432-01 6 29643264 29643264 G A ZFP57 Missense_Mutation p.A84V 0.10 tolerated(0.1) benign(0.047) TCGA-05-4432-01 6 30571379 30571379 G T PPP1R10 Missense_Mutation p.P546H 0.12 deleterious(0) probably_damaging(0.997) TCGA-05-4432-01 6 32169153 32169153 C G NOTCH4 Missense_Mutation p.G1294R 0.31 tolerated(0.28) benign(0.093) TCGA-05-4432-01 6 36285159 36285159 T A C6orf222 Missense_Mutation p.S645C 0.05 deleterious(0) probably_damaging(0.938) TCGA-05-4432-01 6 38775449 38775449 C T DNAH8 Missense_Mutation p.R855W 0.16 possibly_damaging(0.893) TCGA-05-4432-01 6 38850818 38850818 A G DNAH8 Missense_Mutation p.K2447R 0.04 possibly_damaging(0.656) TCGA-05-4432-01 6 41184894 41184894 C A TREML3P RNA 0.16 TCGA-05-4432-01 6 44221076 44221076 C T HSP90AB1 Missense_Mutation p.H676Y 0.14 tolerated(0.3) benign(0.065) TCGA-05-4432-01 6 44255481 44255481 C A TCTE1 Nonsense_Mutation p.G28* 0.16 TCGA-05-4432-01 6 47676002 47676002 G A GPR115 Missense_Mutation p.G46R 0.26 tolerated(0.13) benign(0.006) TCGA-05-4432-01 6 54185441 54185441 G T TINAG Splice_Site p.X140_splice 0.36 TCGA-05-4432-01 6 56468159 56468159 T C DST Intron 0.12 TCGA-05-4432-01 6 66112422 66112422 G - EYS Frame_Shift_Del p.P378Lfs*2 0.14 TCGA-05-4432-01 6 74407145 74407145 C A CD109 Missense_Mutation p.P33T 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-05-4432-01 6 75969072 75969072 G A TMEM30A Nonsense_Mutation p.R226* 0.23 TCGA-05-4432-01 6 76751728 76751728 G T IMPG1 Missense_Mutation p.F61L 0.38 tolerated(0.1) benign(0.085) TCGA-05-4432-01 6 7904925 7904925 A T TXNDC5 Missense_Mutation p.W99R 0.19 deleterious(0) probably_damaging(0.934) TCGA-05-4432-01 6 88773939 88773939 T A SPACA1 Splice_Site p.X244_splice 0.11 TCGA-05-4432-01 6 90577282 90577282 G T CASP8AP2 RNA 0.31 TCGA-05-4432-01 6 96652195 96652195 A G FUT9 3'UTR 0.26 TCGA-05-4432-01 6 97058635 97058635 G T FHL5 Splice_Site p.X231_splice 0.17 TCGA-05-4432-01 7 102738918 102738918 G A ARMC10 Missense_Mutation p.C317Y 0.11 tolerated(0.06) possibly_damaging(0.501) TCGA-05-4432-01 7 107431513 107431513 C A SLC26A3 Missense_Mutation p.V184L 0.10 tolerated(0.62) benign(0.003) TCGA-05-4432-01 7 119914622 119914622 T C KCND2 5'UTR 0.39 TCGA-05-4432-01 7 121668644 121668644 G T PTPRZ1 Missense_Mutation p.S1676I 0.24 deleterious(0) possibly_damaging(0.52) TCGA-05-4432-01 7 121738539 121738539 C T AASS Silent p.L540L 0.07 TCGA-05-4432-01 7 123346396 123346396 T C WASL Missense_Mutation p.E124G 0.15 deleterious(0) unknown(0) TCGA-05-4432-01 7 123594227 123594227 A G SPAM1 Silent p.V201V 0.11 TCGA-05-4432-01 7 127225205 127225205 C T GCC1 Missense_Mutation p.G11D 0.12 deleterious(0) probably_damaging(0.997) TCGA-05-4432-01 7 127236391 127236391 T A FSCN3 Missense_Mutation p.V284E 0.12 deleterious(0) probably_damaging(0.943) TCGA-05-4432-01 7 127670726 127670726 G A LRRC4 5'UTR 0.26 TCGA-05-4432-01 7 132174174 132174174 G T PLXNA4 Silent p.S416S 0.34 TCGA-05-4432-01 7 134252977 134252977 G C AKR1B15 Missense_Mutation p.C73S 0.09 tolerated(0.05) probably_damaging(0.984) TCGA-05-4432-01 7 139655295 139655295 G C TBXAS1 Missense_Mutation p.V240L 0.20 deleterious(0.05) benign(0.076) TCGA-05-4432-01 7 13971169 13971169 G A ETV1 Silent p.L254L 0.10 TCGA-05-4432-01 7 140154936 140154936 C G MKRN1 Missense_Mutation p.E399Q 0.15 tolerated(0.2) probably_damaging(0.96) TCGA-05-4432-01 7 141619029 141619029 G T OR9A4 Missense_Mutation p.M118I 0.32 deleterious(0) probably_damaging(0.993) TCGA-05-4432-01 7 142180730 142180730 G T TRBV6-5 Silent p.A43A 0.05 TCGA-05-4432-01 7 143096454 143096454 C T EPHA1 Silent p.T296T 0.08 TCGA-05-4432-01 7 143747932 143747932 C T OR2A5 Silent p.V146V 0.04 TCGA-05-4432-01 7 158683963 158683963 A G WDR60 Missense_Mutation p.H333R 0.32 tolerated(0.87) possibly_damaging(0.507) TCGA-05-4432-01 7 27284799 27284799 G T EVX1 Missense_Mutation p.R187L 0.20 deleterious(0.01) probably_damaging(0.986) TCGA-05-4432-01 7 4153888 4153888 G T SDK1 Missense_Mutation p.G1269C 0.22 deleterious(0.02) benign(0.185) TCGA-05-4432-01 7 43484383 43484383 C A HECW1 Missense_Mutation p.P538T 0.19 deleterious_low_confidence(0) possibly_damaging(0.611) TCGA-05-4432-01 7 48142902 48142902 G T UPP1 Missense_Mutation p.M110I 0.12 tolerated(0.16) benign(0.055) TCGA-05-4432-01 7 48390351 48390351 T A ABCA13 Missense_Mutation p.L3439Q 0.19 possibly_damaging(0.661) TCGA-05-4432-01 7 62752120 62752120 G A ZNF733P RNA 0.22 TCGA-05-4432-01 7 63726941 63726941 C T ZNF679 Silent p.S310S 0.12 TCGA-05-4432-01 7 63727025 63727027 CCT GA ZNF679 Frame_Shift_Del p.L339Ifs*6 0.21 TCGA-05-4432-01 7 87022321 87022321 G T CROT Missense_Mutation p.Q580H 0.20 tolerated(0.54) benign(0.008) TCGA-05-4432-01 7 87032462 87032462 C T ABCB4 Missense_Mutation p.E1215K 0.16 deleterious(0) benign(0.27) TCGA-05-4432-01 7 87179872 87179872 G T ABCB1 Nonsense_Mutation p.S379* 0.14 TCGA-05-4432-01 7 87459369 87459369 C A RUNDC3B 3'UTR 0.23 TCGA-05-4432-01 7 88962744 88962744 A T ZNF804B Missense_Mutation p.I150F 0.24 deleterious(0.01) possibly_damaging(0.856) TCGA-05-4432-01 7 89790136 89790136 G C STEAP1 Missense_Mutation p.E34D 0.11 tolerated_low_confidence(0.41) benign(0.006) TCGA-05-4432-01 7 92733059 92733059 C A SAMD9 Silent p.G784G 0.18 TCGA-05-4432-01 7 98574387 98574387 G T TRRAP Silent p.P2740P 0.11 TCGA-05-4432-01 8 100832227 100832227 G T VPS13B Missense_Mutation p.L2982F 0.12 deleterious(0) possibly_damaging(0.587) TCGA-05-4432-01 8 105456612 105456612 C G DPYS Silent p.L219L 0.13 TCGA-05-4432-01 8 113323244 113323244 C A CSMD3 Silent p.G2616G 0.30 TCGA-05-4432-01 8 113516125 113516125 T C CSMD3 Silent p.Q1659Q 0.25 TCGA-05-4432-01 8 113988189 113988189 C A CSMD3 Missense_Mutation p.D407Y 0.06 tolerated_low_confidence(0.22) benign(0) TCGA-05-4432-01 8 114111174 114111174 C T CSMD3 Missense_Mutation p.G243E 0.15 deleterious(0) possibly_damaging(0.864) TCGA-05-4432-01 8 14181709 14181709 C A SGCZ Missense_Mutation p.G80V 0.08 deleterious(0) probably_damaging(0.993) TCGA-05-4432-01 8 14181710 14181710 C A SGCZ Missense_Mutation p.G80C 0.08 deleterious(0) probably_damaging(0.995) TCGA-05-4432-01 8 145138042 145138042 G T GPAA1 Silent p.V30V 0.13 TCGA-05-4432-01 8 1857512 1857512 G T ARHGEF10 Missense_Mutation p.W673C 0.15 deleterious(0) probably_damaging(0.986) TCGA-05-4432-01 8 22414373 22414373 G A SORBS3 Silent p.E122E 0.10 TCGA-05-4432-01 8 24324541 24324541 C T ADAM7 Intron 0.41 TCGA-05-4432-01 8 27517030 27517030 T C SCARA3 Missense_Mutation p.I448T 0.28 tolerated(0.16) benign(0.012) TCGA-05-4432-01 8 27898648 27898648 C T NUGGC Missense_Mutation p.A511T 0.33 tolerated(0.2) benign(0.04) TCGA-05-4432-01 8 2820078 2820078 G T CSMD1 Missense_Mutation p.Q3180K 0.11 possibly_damaging(0.511) TCGA-05-4432-01 8 2965290 2965290 G T CSMD1 Missense_Mutation p.P2262Q 0.07 possibly_damaging(0.9) TCGA-05-4432-01 8 3008972 3008972 G T CSMD1 Missense_Mutation p.S1993Y 0.18 possibly_damaging(0.596) TCGA-05-4432-01 8 30695247 30695247 T C TEX15 Silent p.T2468T 0.04 TCGA-05-4432-01 8 3253859 3253859 C A CSMD1 Missense_Mutation p.G817V 0.15 probably_damaging(0.987) TCGA-05-4432-01 8 3265427 3265427 A C CSMD1 Missense_Mutation p.Y689D 0.16 possibly_damaging(0.876) TCGA-05-4432-01 8 35583678 35583678 C T UNC5D Silent p.L438L 0.19 TCGA-05-4432-01 8 42044933 42044933 C T PLAT Silent p.G174G 0.15 TCGA-05-4432-01 8 42725241 42725241 G A RNF170 Silent p.A76A 0.13 TCGA-05-4432-01 8 51621445 51621445 G T SNTG1 Splice_Site p.X398_splice 0.31 TCGA-05-4432-01 8 52321066 52321066 C A PXDNL Missense_Mutation p.V1040L 0.08 tolerated(0.24) possibly_damaging(0.496) TCGA-05-4432-01 8 53084677 53084677 G C ST18 Missense_Mutation p.N248K 0.15 tolerated(0.23) benign(0.001) TCGA-05-4432-01 8 77765002 77765002 G T ZFHX4 Nonsense_Mutation p.G1949* 0.23 TCGA-05-4432-01 8 77768314 77768314 A T ZFHX4 Missense_Mutation p.T3053S 0.36 possibly_damaging(0.535) TCGA-05-4432-01 8 86240888 86240888 G T CA1 Missense_Mutation p.S229R 0.12 tolerated(0.09) benign(0.017) TCGA-05-4432-01 8 89053712 89053712 G A MMP16 Missense_Mutation p.R601C 0.31 deleterious(0) probably_damaging(1) TCGA-05-4432-01 8 96167117 96167117 A T PLEKHF2 3'UTR 0.11 TCGA-05-4432-01 8 98973692 98973692 C T MATN2 Missense_Mutation p.P298S 0.30 tolerated(0.1) possibly_damaging(0.555) TCGA-05-4432-01 9 102595811 102595811 T A NR4A3 Intron 0.18 TCGA-05-4432-01 9 113151817 113151817 C T SVEP1 Silent p.V3291V 0.35 TCGA-05-4432-01 9 131669876 131669876 A T LRRC8A Nonsense_Mutation p.K145* 0.39 TCGA-05-4432-01 9 138715101 138715101 G A CAMSAP1 Missense_Mutation p.A469V 0.14 tolerated(0.9) benign(0.001) TCGA-05-4432-01 9 139749013 139749013 T A MAMDC4 Missense_Mutation p.F273L 0.53 deleterious(0) probably_damaging(0.994) TCGA-05-4432-01 9 16435569 16435569 G A BNC2 Missense_Mutation p.R875C 0.11 deleterious(0) probably_damaging(0.998) TCGA-05-4432-01 9 16552765 16552765 T A BNC2 Splice_Site p.X145_splice 0.23 TCGA-05-4432-01 9 34564690 34564690 G T CNTFR Missense_Mutation p.L76I 0.15 tolerated(0.05) possibly_damaging(0.73) TCGA-05-4432-01 9 34623453 34623453 G T ARID3C Nonsense_Mutation p.C278* 0.21 TCGA-05-4432-01 9 34623454 34623454 C T ARID3C Missense_Mutation p.C278Y 0.21 tolerated(0.07) possibly_damaging(0.898) TCGA-05-4432-01 9 71006565 71006565 G C PGM5 Silent p.L271L 0.18 TCGA-05-4432-01 9 8485784 8485784 G A PTPRD Silent p.F1011F 0.32 TCGA-05-4432-01 9 95080959 95080959 C G NOL8 Missense_Mutation p.V143L 0.14 deleterious(0) probably_damaging(0.977) TCGA-05-4432-01 X 100630242 100630242 G C BTK Missense_Mutation p.L11V 0.27 tolerated(0.09) benign(0.419) TCGA-05-4432-01 X 101138621 101138621 A C ZMAT1 Missense_Mutation p.L593R 0.06 tolerated(0.06) probably_damaging(0.927) TCGA-05-4432-01 X 107938500 107938500 A T COL4A5 Missense_Mutation p.T1609S 0.22 possibly_damaging(0.548) TCGA-05-4432-01 X 109931883 109931883 G A CHRDL1 Silent p.C309C 0.25 TCGA-05-4432-01 X 119575734 119575734 T A LAMP2 Missense_Mutation p.N315I 0.23 deleterious(0) probably_damaging(0.989) TCGA-05-4432-01 X 130409258 130409258 A C IGSF1 Missense_Mutation p.L1068V 0.05 tolerated(0.69) probably_damaging(0.997) TCGA-05-4432-01 X 135427278 135427278 T A GPR112 Silent p.P471P 0.07 TCGA-05-4432-01 X 140996176 140996176 C A MAGEC1 Missense_Mutation p.Q996K 0.31 tolerated(0.35) unknown(0) TCGA-05-4432-01 X 153069795 153069795 G A PDZD4 Silent p.Y441Y 0.12 TCGA-05-4432-01 X 215875 215875 C T PLCXD1 Missense_Mutation p.A282V 0.42 tolerated(0.28) benign(0.029) TCGA-05-4432-01 X 23412154 23412154 C A PTCHD1 Missense_Mutation p.A840D 0.05 deleterious(0) probably_damaging(0.999) TCGA-05-4432-01 X 32305789 32305789 T A DMD Silent p.S2049S 0.17 TCGA-05-4432-01 X 34961456 34961456 G T FAM47B Nonsense_Mutation p.E170* 0.53 TCGA-05-4432-01 X 35993266 35993266 C A CXorf22 Missense_Mutation p.P753T 0.25 deleterious(0) probably_damaging(1) TCGA-05-4432-01 X 37026518 37026518 C A FAM47C Missense_Mutation p.S12Y 0.20 tolerated(0.21) benign(0.348) TCGA-05-4432-01 X 37984667 37984667 T A SYTL5 Missense_Mutation p.I675K 0.30 deleterious(0) possibly_damaging(0.906) TCGA-05-4432-01 X 38033550 38033550 G A SRPX Missense_Mutation p.A71V 0.59 deleterious(0) possibly_damaging(0.622) TCGA-05-4432-01 X 48832429 48832429 C A GRIPAP1 Splice_Site p.X760_splice 0.22 TCGA-05-4432-01 X 50133404 50133404 C A DGKK RNA 0.26 TCGA-05-4432-01 X 50133405 50133405 C A DGKK Intron 0.26 TCGA-05-4432-01 X 53675171 53675171 G A HUWE1 Missense_Mutation p.T43I 0.54 benign(0.332) TCGA-05-4432-01 X 68060320 68060320 C T EFNB1 Silent p.P288P 0.18 TCGA-05-4432-01 X 73045838 73045838 C G XIST RNA 0.20 TCGA-05-4432-01 X 73960665 73960665 G A KIAA2022 Missense_Mutation p.R1243C 0.55 tolerated_low_confidence(0.07) benign(0.006) TCGA-05-4432-01 X 78216969 78216969 C T P2RY10 Missense_Mutation p.R318C 0.57 deleterious(0) possibly_damaging(0.677) TCGA-05-4432-01 X 90691098 90691098 G A PABPC5 Silent p.Q174Q 0.28 TCGA-05-4432-01 Y 2712266 2712266 G T RPS4Y1 Missense_Mutation p.R77L 0.40 deleterious(0) probably_damaging(0.926) TCGA-05-4433-01 10 11973641 11973641 T A UPF2 Missense_Mutation p.Q1229H 0.32 deleterious(0) probably_damaging(0.948) TCGA-05-4433-01 10 124907981 124907981 C T HMX2 Silent p.G29G 0.37 TCGA-05-4433-01 10 21784478 21784478 G C CASC10 3'UTR 0.25 TCGA-05-4433-01 10 75550806 75550807 - T ZSWIM8 Frame_Shift_Ins p.R340Efs*4 0.30 TCGA-05-4433-01 11 111591374 111591374 A T SIK2 Missense_Mutation p.R556S 0.32 deleterious(0.01) probably_damaging(0.948) TCGA-05-4433-01 11 56058356 56058356 A G OR8H1 Silent p.F61F 0.37 TCGA-05-4433-01 11 67378532 67378532 G A NDUFV1 Missense_Mutation p.R256H 0.21 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-05-4433-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.44 deleterious(0) possibly_damaging(0.479) TCGA-05-4433-01 12 43837660 43837660 C T ADAMTS20 Missense_Mutation p.A742T 0.28 tolerated(0.18) benign(0.031) TCGA-05-4433-01 13 111154090 111154090 C T COL4A2 Missense_Mutation p.A1279V 0.26 possibly_damaging(0.787) TCGA-05-4433-01 13 84453707 84453707 G T SLITRK1 Silent p.R646R 0.28 TCGA-05-4433-01 13 98896791 98896791 C T FARP1 Intron 0.25 TCGA-05-4433-01 14 24687421 24687421 C T NEDD8-MDP1 Missense_Mutation p.V23M 0.27 deleterious_low_confidence(0.01) probably_damaging(0.961) TCGA-05-4433-01 15 101971641 101971641 G A PCSK6 Missense_Mutation p.R180W 0.37 deleterious(0) probably_damaging(0.968) TCGA-05-4433-01 15 45405197 45405197 G A DUOX2 Missense_Mutation p.R50C 0.25 tolerated(0.14) possibly_damaging(0.79) TCGA-05-4433-01 15 65208038 65208038 A G ANKDD1A Missense_Mutation p.N26S 0.20 deleterious(0) possibly_damaging(0.874) TCGA-05-4433-01 15 82336228 82336228 G A MEX3B Missense_Mutation p.A328V 0.28 tolerated(0.1) benign(0.028) TCGA-05-4433-01 16 23569456 23569456 G A UBFD1 Missense_Mutation p.V71I 0.39 tolerated(0.22) benign(0.007) TCGA-05-4433-01 16 3304666 3304666 C T MEFV Silent p.P134P 0.26 TCGA-05-4433-01 16 68389759 68389759 G A PRMT7 Missense_Mutation p.C595Y 0.23 tolerated(0.07) benign(0.003) TCGA-05-4433-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.29 TCGA-05-4433-01 19 30935693 30935693 C A ZNF536 Missense_Mutation p.D408E 0.19 tolerated(0.6) benign(0.006) TCGA-05-4433-01 19 41351918 41351918 C T CYP2A6 Missense_Mutation p.V306I 0.30 benign(0.167) TCGA-05-4433-01 1 155108457 155108457 T G SLC50A1 Missense_Mutation p.S24A 0.20 tolerated(0.32) benign(0.31) TCGA-05-4433-01 1 202699065 202699065 G C KDM5B Missense_Mutation p.R1423G 0.25 tolerated(0.21) benign(0.054) TCGA-05-4433-01 1 215823979 215823979 A G USH2A Silent p.S4766S 0.26 TCGA-05-4433-01 1 47685806 47685806 G A TAL1 Silent p.S194S 0.41 TCGA-05-4433-01 20 31374365 31374365 C T DNMT3B Missense_Mutation p.R122C 0.22 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-05-4433-01 20 33570262 33570262 C T MYH7B Silent p.T218T 0.22 TCGA-05-4433-01 21 37741350 37741350 C G MORC3 Missense_Mutation p.Q562E 0.07 tolerated(1) benign(0.044) TCGA-05-4433-01 2 105859409 105859409 G A GPR45 Missense_Mutation p.C365Y 0.25 tolerated(0.1) benign(0.024) TCGA-05-4433-01 2 121107519 121107519 C T INHBB 3'UTR 0.40 TCGA-05-4433-01 2 198950357 198950357 T G PLCL1 Missense_Mutation p.Y706D 0.34 deleterious(0) probably_damaging(0.992) TCGA-05-4433-01 3 142137373 142137373 G A XRN1 Missense_Mutation p.T440M 0.21 deleterious(0) benign(0.17) TCGA-05-4433-01 4 107846995 107846995 G A DKK2 Nonsense_Mutation p.R112* 0.04 TCGA-05-4433-01 4 119626806 119626806 G T METTL14 Missense_Mutation p.S299I 0.18 deleterious(0) probably_damaging(0.996) TCGA-05-4433-01 4 80246366 80246366 T C NAA11 Silent p.S222S 0.16 TCGA-05-4433-01 5 132736615 132736615 C T FSTL4 Missense_Mutation p.R75Q 0.24 tolerated(0.6) benign(0.006) TCGA-05-4433-01 6 150057671 150057671 C A NUP43 Missense_Mutation p.L242F 0.24 deleterious(0.03) benign(0.236) TCGA-05-4433-01 6 6006965 6006965 G A NRN1 Silent p.N6N 0.21 TCGA-05-4433-01 8 62371045 62371045 C T CLVS1 Silent p.H307H 0.21 TCGA-05-4433-01 9 21971111 21971111 G A CDKN2A Missense_Mutation p.H83Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-05-4433-01 9 37541372 37541372 C G FBXO10 Missense_Mutation p.D132H 0.23 deleterious(0) probably_damaging(0.995) TCGA-05-4433-01 9 39361018 39361018 G A SPATA31A1 Missense_Mutation p.E1086K 0.18 tolerated(0.31) benign(0.001) TCGA-05-4433-01 9 39890269 39890269 G A SPATA31A2 Missense_Mutation p.E1086K 0.18 tolerated(0.32) benign(0) TCGA-05-4433-01 X 86087200 86087200 T C DACH2 3'UTR 0.62 TCGA-05-4434-01 10 127429728 127429728 C T EDRF1 Nonsense_Mutation p.Q777* 0.12 TCGA-05-4434-01 10 87898745 87898745 G A GRID1 Missense_Mutation p.S186L 0.04 tolerated(0.07) probably_damaging(0.994) TCGA-05-4434-01 11 61976175 61976175 G A SCGB2A1 5'UTR 0.09 TCGA-05-4434-01 11 62752036 62752036 C T SLC22A6 Missense_Mutation p.A43T 0.08 tolerated(0.2) probably_damaging(0.98) TCGA-05-4434-01 11 67166623 67166623 C - PPP1CA Frame_Shift_Del p.D190Tfs*73 0.19 TCGA-05-4434-01 12 56489568 56489568 G A ERBB3 Missense_Mutation p.R678K 0.10 deleterious(0) probably_damaging(0.997) TCGA-05-4434-01 12 57641974 57641974 C A STAC3 Missense_Mutation p.G147V 0.30 deleterious(0) probably_damaging(0.999) TCGA-05-4434-01 12 6925422 6925422 C T CD4 Missense_Mutation p.P270S 0.34 tolerated(0.45) benign(0.159) TCGA-05-4434-01 14 91389482 91389482 C G RPS6KA5 Missense_Mutation p.R226T 0.05 deleterious(0.01) benign(0.285) TCGA-05-4434-01 15 101433167 101433167 T A ALDH1A3 Missense_Mutation p.F165I 0.24 deleterious(0.04) benign(0.102) TCGA-05-4434-01 15 35274487 35274487 T C ZNF770 Silent p.R383R 0.08 TCGA-05-4434-01 16 48244898 48244898 C T ABCC11 Silent p.L523L 0.35 TCGA-05-4434-01 16 69724870 69724870 A G NFAT5 Missense_Mutation p.D601G 0.19 benign(0.176) TCGA-05-4434-01 16 72174328 72174328 C T PMFBP1 Missense_Mutation p.A264T 0.10 deleterious(0.04) possibly_damaging(0.895) TCGA-05-4434-01 17 10412921 10412921 G A MYH1 Nonsense_Mutation p.Q490* 0.12 TCGA-05-4434-01 17 37034383 37034383 A G LASP1 Silent p.T38T 0.18 TCGA-05-4434-01 17 37880997 37880998 - TAT ERBB2 In_Frame_Ins p.G776delinsVC 0.30 TCGA-05-4434-01 17 5324728 5324728 T A RPAIN Missense_Mutation p.M65K 0.09 deleterious(0) probably_damaging(0.979) TCGA-05-4434-01 17 62230409 62230409 C T TEX2 Silent p.K1019K 0.10 TCGA-05-4434-01 17 9460847 9460847 T A STX8 Splice_Site p.X40_splice 0.23 TCGA-05-4434-01 18 6980611 6980611 C G LAMA1 Missense_Mutation p.L1972F 0.07 deleterious(0.01) possibly_damaging(0.824) TCGA-05-4434-01 19 1063563 1063563 G A ABCA7 Silent p.A1911A 0.08 TCGA-05-4434-01 19 17780382 17780382 G A UNC13A Missense_Mutation p.T125M 0.20 deleterious_low_confidence(0) possibly_damaging(0.535) TCGA-05-4434-01 19 53913791 53913791 G A ZNF765 3'UTR 0.13 TCGA-05-4434-01 19 56572808 56572808 G A NLRP5 Missense_Mutation p.E1173K 0.22 tolerated(0.19) benign(0.043) TCGA-05-4434-01 19 56572884 56572884 G A NLRP5 Nonsense_Mutation p.W1198* 0.21 TCGA-05-4434-01 1 224477242 224477242 G A NVL Missense_Mutation p.P507S 0.05 tolerated(0.32) benign(0.001) TCGA-05-4434-01 1 233160989 233160989 T G PCNXL2 Missense_Mutation p.Q1503P 0.14 deleterious(0) benign(0.085) TCGA-05-4434-01 1 24484026 24484026 G A IFNLR1 Missense_Mutation p.S386L 0.07 deleterious(0) probably_damaging(0.999) TCGA-05-4434-01 22 21988400 21988400 C T CCDC116 Silent p.S54S 0.14 TCGA-05-4434-01 22 30035169 30035169 C T NF2 Nonsense_Mutation p.Q111* 0.06 TCGA-05-4434-01 22 30197042 30197042 A G ASCC2 Silent p.N542N 0.16 TCGA-05-4434-01 22 32445957 32445957 G C SLC5A1 Missense_Mutation p.V55L 0.22 tolerated(0.05) benign(0.032) TCGA-05-4434-01 22 36708237 36708237 C A MYH9 Missense_Mutation p.D529Y 0.11 probably_damaging(0.999) TCGA-05-4434-01 2 175742790 175742790 G A CHN1 Silent p.R109R 0.09 TCGA-05-4434-01 2 27462316 27462316 G A CAD Missense_Mutation p.E1791K 0.07 tolerated(0.27) possibly_damaging(0.87) TCGA-05-4434-01 2 77745685 77745685 G A LRRTM4 Missense_Mutation p.A437V 0.22 tolerated(1) benign(0.016) TCGA-05-4434-01 3 112727277 112727277 C T C3orf17 Missense_Mutation p.E326K 0.16 tolerated(0.2) benign(0.033) TCGA-05-4434-01 3 122274901 122274901 T A PARP9 Missense_Mutation p.L74F 0.07 tolerated(0.13) benign(0.102) TCGA-05-4434-01 3 122418783 122418783 A G PARP14 Missense_Mutation p.K461R 0.18 tolerated(0.41) benign(0.015) TCGA-05-4434-01 3 195295724 195295724 G A APOD 3'UTR 0.33 TCGA-05-4434-01 3 8809556 8809556 G A OXTR Silent p.Y106Y 0.15 TCGA-05-4434-01 4 158142087 158142087 G C GRIA2 5'UTR 0.14 TCGA-05-4434-01 4 70620398 70620398 T A SULT1B1 Missense_Mutation p.L89F 0.06 tolerated(0.62) benign(0.255) TCGA-05-4434-01 5 140554534 140554534 C T PCDHB7 Silent p.F706F 0.03 TCGA-05-4434-01 5 140755505 140755505 G A PCDHGA6 Missense_Mutation p.V619M 0.14 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-05-4434-01 6 107390628 107390628 C T BEND3 Silent p.E589E 0.15 TCGA-05-4434-01 6 1390684 1390684 C A FOXF2 Missense_Mutation p.P168T 0.05 deleterious(0.02) possibly_damaging(0.888) TCGA-05-4434-01 6 152751686 152751686 T C SYNE1 Silent p.A1540A 0.03 TCGA-05-4434-01 6 160679700 160679700 C T SLC22A2 Silent p.S30S 0.06 TCGA-05-4434-01 6 160831831 160831831 C T SLC22A3 Missense_Mutation p.R310C 0.09 deleterious(0.01) benign(0.436) TCGA-05-4434-01 6 31605327 31605328 - G PRRC2A Frame_Shift_Ins p.D2148Gfs*25 0.17 TCGA-05-4434-01 6 76728564 76728564 T A IMPG1 Silent p.T226T 0.44 TCGA-05-4434-01 7 151896444 151896445 TT - KMT2C Frame_Shift_Del p.N1398Hfs*15 0.18 TCGA-05-4434-01 7 152497649 152497649 A C ACTR3B Missense_Mutation p.D45A 0.10 tolerated(0.43) benign(0.008) TCGA-05-4434-01 7 84644482 84644482 G A SEMA3D Silent p.H532H 0.13 TCGA-05-4434-01 8 101146122 101146122 C G FBXO43 Missense_Mutation p.E679Q 0.44 deleterious(0.03) possibly_damaging(0.857) TCGA-05-4434-01 8 101154000 101154000 G C FBXO43 Missense_Mutation p.S161C 0.06 deleterious(0.01) benign(0.086) TCGA-05-4434-01 8 71126235 71126235 A - NCOA2 Frame_Shift_Del p.F54Lfs*7 0.13 TCGA-05-4434-01 9 115580031 115580031 G T SNX30 Missense_Mutation p.R132I 0.24 deleterious(0) probably_damaging(0.999) TCGA-05-4434-01 9 130162258 130162258 G A SLC2A8 Missense_Mutation p.V167I 0.15 tolerated(0.87) benign(0.001) TCGA-05-4434-01 9 35616193 35616193 G C CD72 Silent p.L145L 0.10 TCGA-05-4434-01 X 152915088 152915088 G A DUSP9 Missense_Mutation p.D259N 0.03 deleterious(0) probably_damaging(0.998) TCGA-05-4434-01 X 53225159 53225159 T - KDM5C Frame_Shift_Del p.Q1020Rfs*35 0.29 TCGA-05-4434-01 X 76711920 76711920 T C FGF16 Silent p.T86T 0.15 TCGA-05-5420-01 10 102678196 102678196 C T FAM178A Missense_Mutation p.S324L 0.11 deleterious(0.04) possibly_damaging(0.607) TCGA-05-5420-01 10 135053498 135053498 G A VENTX Silent p.L155L 0.15 TCGA-05-5420-01 10 23408331 23408331 G T MSRB2 Missense_Mutation p.R132L 0.10 deleterious(0.01) possibly_damaging(0.882) TCGA-05-5420-01 10 25886922 25886922 G C GPR158 Missense_Mutation p.R789S 0.15 deleterious(0.02) benign(0.041) TCGA-05-5420-01 10 43315759 43315759 G A BMS1 Missense_Mutation p.V886I 0.15 tolerated(0.12) benign(0.04) TCGA-05-5420-01 10 68687143 68687143 C A LRRTM3 Silent p.R157R 0.12 TCGA-05-5420-01 10 7618423 7618423 C T ITIH5 Silent p.T657T 0.18 TCGA-05-5420-01 11 113702712 113702712 C T USP28 Missense_Mutation p.D255N 0.13 deleterious(0) probably_damaging(0.999) TCGA-05-5420-01 11 27742963 27742963 G T RP11-587D21.4 Intron 0.20 TCGA-05-5420-01 11 4824855 4824855 C A OR52R1 Missense_Mutation p.L252F 0.15 deleterious(0.01) probably_damaging(1) TCGA-05-5420-01 11 55110891 55110891 C A OR4A16 Missense_Mutation p.S72Y 0.22 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-05-5420-01 11 57971611 57971611 G T OR1S2 Missense_Mutation p.H15N 0.15 tolerated(0.21) benign(0.003) TCGA-05-5420-01 11 5809322 5809322 G T OR52N1 Missense_Mutation p.T242N 0.10 deleterious(0) probably_damaging(1) TCGA-05-5420-01 11 60070111 60070111 C T MS4A4A Missense_Mutation p.A156V 0.07 tolerated(0.35) benign(0.015) TCGA-05-5420-01 11 63999376 63999376 G A DNAJC4 Silent p.G40G 0.11 TCGA-05-5420-01 11 65810949 65810949 G - GAL3ST3 Frame_Shift_Del p.R109Afs*131 0.19 TCGA-05-5420-01 11 76829343 76829343 A G CAPN5 Missense_Mutation p.Q371R 0.14 tolerated(0.55) benign(0.002) TCGA-05-5420-01 11 8751902 8751902 C T ST5 Missense_Mutation p.R312Q 0.21 tolerated(0.59) benign(0.001) TCGA-05-5420-01 12 100928726 100928726 T C NR1H4 Silent p.H229H 0.17 TCGA-05-5420-01 12 10312420 10312420 A C OLR1 3'UTR 0.16 TCGA-05-5420-01 12 125397791 125397791 T G UBC Missense_Mutation p.E176A 0.06 tolerated(0.21) benign(0.002) TCGA-05-5420-01 12 125834457 125834457 C A TMEM132B Missense_Mutation p.A171E 0.06 deleterious(0.05) possibly_damaging(0.479) TCGA-05-5420-01 12 133727632 133727632 G T CTD-2140B24.4 Missense_Mutation p.D18Y 0.14 deleterious(0) unknown(0) TCGA-05-5420-01 12 62938755 62938755 A T MON2 Silent p.T848T 0.19 TCGA-05-5420-01 12 72091178 72091178 C A TMEM19 Nonsense_Mutation p.Y167* 0.19 TCGA-05-5420-01 12 8211605 8211605 A G C3AR1 Missense_Mutation p.Y393H 0.12 deleterious(0) probably_damaging(0.999) TCGA-05-5420-01 13 110822018 110822018 A G COL4A1 Silent p.G1278G 0.15 TCGA-05-5420-01 13 32972945 32972945 C T BRCA2 3'UTR 0.15 TCGA-05-5420-01 14 24600930 24600930 G C RP11-468E2.6 Missense_Mutation p.R241P 0.08 deleterious_low_confidence(0) possibly_damaging(0.655) TCGA-05-5420-01 14 24808294 24808294 T A RIPK3 Missense_Mutation p.D133V 0.09 deleterious(0) benign(0.004) TCGA-05-5420-01 14 58831476 58831476 T C ARID4A Missense_Mutation p.I890T 0.07 tolerated_low_confidence(0.57) benign(0) TCGA-05-5420-01 15 44955626 44955626 C A SPG11 Missense_Mutation p.G74C 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-05-5420-01 15 44955627 44955627 C A SPG11 Silent p.R73R 0.21 TCGA-05-5420-01 15 89811675 89811675 G C FANCI Silent p.V267V 0.11 TCGA-05-5420-01 15 89811676 89811676 G T FANCI Nonsense_Mutation p.E268* 0.11 TCGA-05-5420-01 15 97327418 97327418 G T SPATA8 Missense_Mutation p.C42F 0.13 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-05-5420-01 16 1798647 1798647 A G MAPK8IP3 Missense_Mutation p.D380G 0.12 deleterious(0.03) possibly_damaging(0.873) TCGA-05-5420-01 16 2906186 2906186 C A PRSS22 Nonsense_Mutation p.E60* 0.15 TCGA-05-5420-01 17 21146727 21146727 C T C17orf103 Missense_Mutation p.V80M 0.09 tolerated(0.12) possibly_damaging(0.742) TCGA-05-5420-01 17 39552755 39552755 G C KRT31 Missense_Mutation p.L169V 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-05-5420-01 17 39636983 39636983 C A KRT35 Missense_Mutation p.A123S 0.06 tolerated(0.05) benign(0.065) TCGA-05-5420-01 17 41245544 41245544 G A BRCA1 Silent p.L668L 0.12 TCGA-05-5420-01 17 65021068 65021068 C A CACNG4 Missense_Mutation p.R133S 0.05 tolerated(1) benign(0.001) TCGA-05-5420-01 17 7809897 7809897 A G CHD3 Missense_Mutation p.H1521R 0.12 possibly_damaging(0.537) TCGA-05-5420-01 17 79682037 79682037 C T SLC25A10 Missense_Mutation p.R50W 0.18 deleterious(0) possibly_damaging(0.655) TCGA-05-5420-01 18 33694106 33694106 C A SLC39A6 Silent p.V599V 0.07 TCGA-05-5420-01 19 10334757 10334757 G A S1PR2 Silent p.A275A 0.14 TCGA-05-5420-01 19 11100015 11100015 C T SMARCA4 Nonsense_Mutation p.R381* 0.18 TCGA-05-5420-01 19 17058020 17058020 C T CPAMD8 Silent p.S889S 0.08 TCGA-05-5420-01 19 20308637 20308637 C T ZNF486 Missense_Mutation p.T373I 0.14 deleterious(0) probably_damaging(0.996) TCGA-05-5420-01 19 30312666 30312666 T A CCNE1 Missense_Mutation p.V216E 0.09 deleterious(0) probably_damaging(0.968) TCGA-05-5420-01 19 31025842 31025842 C G ZNF536 Missense_Mutation p.C753W 0.06 deleterious(0) probably_damaging(0.997) TCGA-05-5420-01 19 40408275 40408275 A T FCGBP Missense_Mutation p.W1522R 0.42 probably_damaging(1) TCGA-05-5420-01 19 44495759 44495759 G A ZNF155 Silent p.L36L 0.24 TCGA-05-5420-01 19 44495760 44495760 G A ZNF155 Missense_Mutation p.D37N 0.24 tolerated(0.1) probably_damaging(0.913) TCGA-05-5420-01 19 47823129 47823129 C T C5AR1 Missense_Mutation p.T32M 0.17 tolerated(0.16) benign(0.143) TCGA-05-5420-01 19 51022162 51022162 G A LRRC4B Missense_Mutation p.R270C 0.21 deleterious(0) probably_damaging(0.998) TCGA-05-5420-01 19 52148735 52148735 C A SIGLEC14 Missense_Mutation p.G250V 0.22 tolerated(0.18) benign(0.009) TCGA-05-5420-01 19 54937858 54937858 C T TTYH1 Missense_Mutation p.A216V 0.10 deleterious(0.01) benign(0.046) TCGA-05-5420-01 1 176564566 176564566 G A PAPPA2 Missense_Mutation p.G609E 0.08 deleterious(0) probably_damaging(1) TCGA-05-5420-01 1 19545844 19545844 T A EMC1 Missense_Mutation p.T979S 0.18 tolerated(0.3) benign(0.383) TCGA-05-5420-01 1 206325297 206325297 G A CTSE Silent p.Q174Q 0.05 TCGA-05-5420-01 1 248790184 248790184 C G OR2T11 Missense_Mutation p.M82I 0.27 tolerated(0.38) benign(0.008) TCGA-05-5420-01 1 32682936 32682936 C A TMEM234 Silent p.V84V 0.09 TCGA-05-5420-01 1 52867116 52867116 G A ORC1 Silent p.I47I 0.14 TCGA-05-5420-01 20 1456807 1456807 A T SIRPB2 3'UTR 0.11 TCGA-05-5420-01 20 23065344 23065344 G T CD93 Missense_Mutation p.R496S 0.17 tolerated(1) benign(0) TCGA-05-5420-01 20 3686514 3686514 C T SIGLEC1 Missense_Mutation p.G195S 0.11 deleterious(0.05) possibly_damaging(0.586) TCGA-05-5420-01 21 19653418 19653418 A T TMPRSS15 Missense_Mutation p.N869K 0.08 deleterious(0.01) benign(0.354) TCGA-05-5420-01 2 130725928 130725928 T A RAB6C-AS1 RNA 0.06 TCGA-05-5420-01 2 163291819 163291819 C A KCNH7 Missense_Mutation p.V615F 0.11 deleterious(0) probably_damaging(0.995) TCGA-05-5420-01 2 165561011 165561011 C A COBLL1 Nonsense_Mutation p.G390* 0.10 TCGA-05-5420-01 2 197298051 197298051 C T HECW2 Missense_Mutation p.A33T 0.15 tolerated_low_confidence(0.64) benign(0.023) TCGA-05-5420-01 2 220476447 220476447 C T STK11IP Silent p.A753A 0.07 TCGA-05-5420-01 2 74755588 74755588 C T AUP1 Missense_Mutation p.V185I 0.17 tolerated(0.38) benign(0.021) TCGA-05-5420-01 3 134197311 134197311 A - ANAPC13 3'UTR 0.18 TCGA-05-5420-01 3 169587618 169587618 C T LRRC31 5'UTR 0.21 TCGA-05-5420-01 3 169587661 169587661 C T LRRC31 5'Flank 0.29 TCGA-05-5420-01 3 45134848 45134848 G T CDCP1 Silent p.T516T 0.05 TCGA-05-5420-01 4 119736190 119736190 G C SEC24D Missense_Mutation p.P265R 0.09 deleterious(0) probably_damaging(1) TCGA-05-5420-01 4 158238861 158238861 C G GRIA2 Missense_Mutation p.L240V 0.10 deleterious(0) benign(0.314) TCGA-05-5420-01 4 77816907 77816912 ACATTT - SOWAHB In_Frame_Del p.N698_V699del 0.11 TCGA-05-5420-01 4 88106793 88106793 G A KLHL8 Silent p.V125V 0.09 TCGA-05-5420-01 5 140725167 140725167 G A PCDHGA3 Missense_Mutation p.E523K 0.12 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-05-5420-01 5 142264928 142264928 T G ARHGAP26 Missense_Mutation p.N150K 0.20 deleterious(0.03) possibly_damaging(0.728) TCGA-05-5420-01 5 145883476 145883476 C A TCERG1 Silent p.A879A 0.09 TCGA-05-5420-01 5 156535979 156535979 G A HAVCR2 Missense_Mutation p.P6S 0.14 tolerated(1) benign(0.002) TCGA-05-5420-01 5 33891898 33891898 C A ADAMTS12 Missense_Mutation p.G22W 0.11 tolerated_low_confidence(0.09) benign(0.01) TCGA-05-5420-01 5 9629646 9629646 G T TAS2R1 Missense_Mutation p.Q167K 0.08 tolerated(0.87) benign(0.348) TCGA-05-5420-01 6 18457500 18457500 A G RNF144B Missense_Mutation p.H149R 0.08 tolerated(0.62) benign(0.003) TCGA-05-5420-01 6 30128630 30128630 G T TRIM10 Silent p.A2A 0.19 TCGA-05-5420-01 6 47846983 47846983 T G PTCHD4 Missense_Mutation p.S533R 0.10 deleterious(0) benign(0.137) TCGA-05-5420-01 6 80746194 80746194 A C TTK Missense_Mutation p.I643L 0.12 deleterious(0.02) probably_damaging(0.981) TCGA-05-5420-01 7 100679976 100679976 C A MUC17 Missense_Mutation p.P1760Q 0.07 benign(0.199) TCGA-05-5420-01 7 100685846 100685846 C T MUC17 Missense_Mutation p.P3717S 0.06 possibly_damaging(0.641) TCGA-05-5420-01 7 107115089 107115089 T A GPR22 Missense_Mutation p.L195H 0.05 tolerated(0.15) possibly_damaging(0.669) TCGA-05-5420-01 7 120704319 120704319 C G CPED1 Missense_Mutation p.P190A 0.09 tolerated(0.67) benign(0.001) TCGA-05-5420-01 7 129125534 129125534 T C STRIP2 Missense_Mutation p.V790A 0.16 tolerated(0.05) probably_damaging(0.998) TCGA-05-5420-01 7 140110849 140110849 G T RAB19 Intron 0.15 TCGA-05-5420-01 7 142378624 142378624 C T MTRNR2L6 3'Flank 0.27 TCGA-05-5420-01 7 143141101 143141101 C A TAS2R60 Silent p.R186R 0.14 TCGA-05-5420-01 7 23793962 23793962 A T STK31 Nonsense_Mutation p.K388* 0.06 TCGA-05-5420-01 7 38725520 38725520 C T FAM183B Missense_Mutation p.R29Q 0.10 tolerated(0.1) possibly_damaging(0.816) TCGA-05-5420-01 7 56172005 56172005 C T CHCHD2 Missense_Mutation p.V72M 0.11 deleterious(0.04) probably_damaging(0.927) TCGA-05-5420-01 7 6505922 6505922 G A KDELR2 Silent p.S128S 0.13 TCGA-05-5420-01 7 72732960 72732960 C A TRIM50 Missense_Mutation p.G196V 0.06 tolerated(0.18) possibly_damaging(0.603) TCGA-05-5420-01 7 87080995 87080995 G A ABCB4 Missense_Mutation p.L218F 0.09 deleterious(0) possibly_damaging(0.866) TCGA-05-5420-01 8 110455939 110455939 G T PKHD1L1 Silent p.V1533V 0.22 TCGA-05-5420-01 8 110631185 110631185 G A SYBU Missense_Mutation p.P105S 0.03 tolerated(0.1) possibly_damaging(0.544) TCGA-05-5420-01 8 33455066 33455066 G T DUSP26 5'UTR 0.40 TCGA-05-5420-01 9 125289309 125289309 G A OR1N1 Silent p.H88H 0.10 TCGA-05-5420-01 9 127302372 127302372 G C NR6A1 Missense_Mutation p.S179C 0.15 tolerated(0.06) probably_damaging(0.979) TCGA-05-5420-01 9 127619095 127619095 T A WDR38 Missense_Mutation p.W235R 0.19 deleterious(0.02) probably_damaging(1) TCGA-05-5420-01 9 74838084 74838084 T A GDA Missense_Mutation p.S219T 0.14 tolerated(0.85) benign(0.001) TCGA-05-5420-01 9 75435847 75435847 G T TMC1 Missense_Mutation p.C618F 0.07 deleterious(0) probably_damaging(0.953) TCGA-05-5420-01 9 94487168 94487168 G A ROR2 Silent p.V536V 0.13 TCGA-05-5420-01 9 99798905 99798905 C - CTSV Frame_Shift_Del p.G174Afs*32 0.14 TCGA-05-5420-01 X 154128189 154128189 G A F8 Silent p.S2075S 0.12 TCGA-05-5420-01 X 36103615 36103615 C A CHDC2 Missense_Mutation p.Q201K 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-05-5420-01 X 591835 591835 T A SHOX Missense_Mutation p.V68E 0.09 deleterious(0) benign(0.287) TCGA-05-5423-01 10 127426555 127426555 A T EDRF1 Silent p.L609L 0.53 TCGA-05-5423-01 10 22680767 22680767 G T SPAG6 Missense_Mutation p.R372L 0.45 tolerated(0.2) benign(0.166) TCGA-05-5423-01 10 32098161 32098161 G A ARHGAP12 Missense_Mutation p.H709Y 0.22 deleterious(0) probably_damaging(0.916) TCGA-05-5423-01 10 45799763 45799763 C A OR13A1 Silent p.S36S 0.59 TCGA-05-5423-01 10 46968638 46968638 G C SYT15 Missense_Mutation p.P100A 0.50 tolerated(0.21) benign(0.013) TCGA-05-5423-01 10 88476273 88476273 C A LDB3 Nonsense_Mutation p.S479* 0.64 TCGA-05-5423-01 10 98129870 98129870 G A TLL2 Silent p.D955D 0.51 TCGA-05-5423-01 11 102709964 102709964 G A MMP3 Missense_Mutation p.R316C 0.47 deleterious(0) probably_damaging(1) TCGA-05-5423-01 11 111225164 111225164 G T POU2AF1 Missense_Mutation p.P198Q 0.25 deleterious(0.01) probably_damaging(0.98) TCGA-05-5423-01 11 1718520 1718520 G T KRTAP5-6 Silent p.G15G 0.21 TCGA-05-5423-01 11 32674751 32674751 T C CCDC73 Missense_Mutation p.H286R 0.40 tolerated(0.92) benign(0.013) TCGA-05-5423-01 11 47345883 47345883 A T MADD Missense_Mutation p.K1537I 0.15 tolerated(0.49) probably_damaging(0.999) TCGA-05-5423-01 11 47374196 47374196 C T MYBPC3 Translation_Start_Site p.M1? 0.36 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-05-5423-01 11 49974040 49974040 G T OR4C13 Missense_Mutation p.Q22H 0.16 deleterious_low_confidence(0.01) benign(0.234) TCGA-05-5423-01 11 55371129 55371129 G A OR4C11 Missense_Mutation p.H241Y 0.50 deleterious(0) benign(0.314) TCGA-05-5423-01 11 55418437 55418437 G T OR4S2 Nonsense_Mutation p.E20* 0.35 TCGA-05-5423-01 11 56127726 56127726 G A OR8J1 Missense_Mutation p.A2T 0.49 tolerated(0.1) benign(0.02) TCGA-05-5423-01 11 65375749 65375749 C T MAP3K11 Missense_Mutation p.D304N 0.17 deleterious(0) possibly_damaging(0.616) TCGA-05-5423-01 11 74617397 74617397 C A XRRA1 Missense_Mutation p.S289I 0.17 deleterious(0.01) possibly_damaging(0.526) TCGA-05-5423-01 11 92086077 92086077 C A FAT3 Missense_Mutation p.H267N 0.39 benign(0) TCGA-05-5423-01 12 101757487 101757487 A G UTP20 Missense_Mutation p.D1975G 0.49 tolerated(0.15) benign(0.002) TCGA-05-5423-01 12 120106160 120106160 G A PRKAB1 Silent p.L37L 0.17 TCGA-05-5423-01 12 28702079 28702079 A T CCDC91 Silent p.I433I 0.61 TCGA-05-5423-01 12 4768321 4768321 C G NDUFA9 Missense_Mutation p.S177C 0.20 deleterious(0.03) benign(0.003) TCGA-05-5423-01 12 77438543 77438543 T A E2F7 Nonsense_Mutation p.R288* 0.65 TCGA-05-5423-01 12 80762088 80762088 C T OTOGL Missense_Mutation p.A2196V 0.44 tolerated(0.1) benign(0.012) TCGA-05-5423-01 13 28602427 28602427 T A FLT3 Splice_Site p.X648_splice 0.32 TCGA-05-5423-01 13 49794774 49794774 T C MLNR Missense_Mutation p.S101P 0.70 tolerated(0.1) benign(0.144) TCGA-05-5423-01 13 76397902 76397902 C T LMO7 Nonsense_Mutation p.Q715* 0.23 TCGA-05-5423-01 14 102906821 102906821 G T TECPR2 Missense_Mutation p.C876F 0.22 deleterious(0) probably_damaging(0.92) TCGA-05-5423-01 14 105408258 105408258 G T AHNAK2 Missense_Mutation p.D4510E 0.29 benign(0.155) TCGA-05-5423-01 14 50667801 50667801 T C SOS2 Missense_Mutation p.E72G 0.26 deleterious(0.04) benign(0.32) TCGA-05-5423-01 14 70245197 70245197 A C SLC10A1 Missense_Mutation p.C266G 0.22 deleterious(0.01) probably_damaging(1) TCGA-05-5423-01 14 91356980 91356980 T C RPS6KA5 Missense_Mutation p.I563V 0.46 tolerated(0.44) benign(0.012) TCGA-05-5423-01 15 25486758 25486758 T C SNORD115-40 5'Flank 0.70 TCGA-05-5423-01 15 34032030 34032030 C A RYR3 Intron 0.47 TCGA-05-5423-01 15 40581051 40581051 C T PLCB2 Silent p.S1141S 0.13 TCGA-05-5423-01 15 44789291 44789291 G T CTDSPL2 Silent p.P279P 0.49 TCGA-05-5423-01 15 99465655 99465655 C A IGF1R Missense_Mutation p.P827H 0.52 deleterious(0) probably_damaging(0.992) TCGA-05-5423-01 16 1261168 1261168 G T CACNA1H Missense_Mutation p.R1408S 0.32 deleterious(0) probably_damaging(0.997) TCGA-05-5423-01 16 22237269 22237269 G T EEF2K Silent p.G73G 0.32 TCGA-05-5423-01 16 2229900 2229900 G T CASKIN1 Silent p.R1157R 0.29 TCGA-05-5423-01 16 25258612 25258612 C A ZKSCAN2 Missense_Mutation p.R302L 0.44 tolerated(0.07) benign(0.307) TCGA-05-5423-01 16 3255025 3255025 T G OR1F1 Missense_Mutation p.F260C 0.37 deleterious(0) probably_damaging(0.996) TCGA-05-5423-01 16 46633812 46633812 A T SHCBP1 Missense_Mutation p.C426S 0.30 tolerated(0.62) probably_damaging(0.933) TCGA-05-5423-01 16 46781866 46781866 C A MYLK3 Silent p.G80G 0.23 TCGA-05-5423-01 16 51173150 51173150 G A SALL1 Missense_Mutation p.R995W 0.13 deleterious(0) probably_damaging(0.99) TCGA-05-5423-01 16 51174200 51174200 G A SALL1 Missense_Mutation p.P645S 0.18 tolerated(0.57) benign(0.001) TCGA-05-5423-01 16 51175394 51175394 T A SALL1 Missense_Mutation p.I247F 0.15 deleterious(0) probably_damaging(0.996) TCGA-05-5423-01 16 52472881 52472881 G A TOX3 3'UTR 0.29 TCGA-05-5423-01 16 53272307 53272307 A G CHD9 Missense_Mutation p.I896V 0.22 benign(0.397) TCGA-05-5423-01 16 67686373 67686373 A G RLTPR Splice_Site p.X940_splice 0.62 TCGA-05-5423-01 16 69458735 69458735 A G CYB5B Missense_Mutation p.Y50C 0.46 deleterious(0) probably_damaging(0.999) TCGA-05-5423-01 16 83520147 83520147 C T CDH13 Missense_Mutation p.R330W 0.20 deleterious(0) probably_damaging(1) TCGA-05-5423-01 16 9916122 9916122 C A GRIN2A Missense_Mutation p.G723W 0.45 deleterious(0) probably_damaging(1) TCGA-05-5423-01 17 29855757 29855757 C A RAB11FIP4 Silent p.R538R 0.44 TCGA-05-5423-01 17 40453374 40453374 C T STAT5A Silent p.G357G 0.59 TCGA-05-5423-01 17 56679786 56679786 C T TEX14 Missense_Mutation p.R507Q 0.12 tolerated(1) benign(0.021) TCGA-05-5423-01 17 61771187 61771187 G T MAP3K3 3'UTR 0.50 TCGA-05-5423-01 17 67003946 67003946 C T ABCA9 Missense_Mutation p.R1130H 0.24 tolerated(0.12) benign(0.344) TCGA-05-5423-01 17 73484840 73484840 G A KIAA0195 Missense_Mutation p.D205N 0.20 tolerated(0.12) probably_damaging(0.928) TCGA-05-5423-01 17 7577535 7577535 C A TP53 Missense_Mutation p.R249M 0.52 deleterious(0) probably_damaging(0.993) TCGA-05-5423-01 17 7578264 7578264 G C TP53 Missense_Mutation p.I195M 0.52 deleterious(0.03) probably_damaging(1) TCGA-05-5423-01 17 7708677 7708677 C T DNAH2 Silent p.N3136N 0.22 TCGA-05-5423-01 18 42643114 42643114 G T SETBP1 Missense_Mutation p.M1414I 0.47 deleterious(0.01) probably_damaging(0.946) TCGA-05-5423-01 18 43462448 43462448 T A EPG5 Missense_Mutation p.D1770V 0.23 deleterious(0.02) probably_damaging(0.994) TCGA-05-5423-01 18 61160254 61160254 G A SERPINB5 Missense_Mutation p.A165T 0.36 tolerated(0.08) possibly_damaging(0.63) TCGA-05-5423-01 19 10469871 10469871 C A TYK2 Missense_Mutation p.A719S 0.58 deleterious(0.02) probably_damaging(0.967) TCGA-05-5423-01 19 17487843 17487843 G A PLVAP Silent p.T85T 0.62 TCGA-05-5423-01 19 2138643 2138643 G A AP3D1 Missense_Mutation p.A56V 0.32 deleterious(0) possibly_damaging(0.638) TCGA-05-5423-01 19 3053807 3053807 C A AES 3'UTR 0.67 TCGA-05-5423-01 19 38709662 38709662 G T DPF1 Missense_Mutation p.P139Q 0.48 tolerated(0.07) benign(0.365) TCGA-05-5423-01 19 41306994 41306994 G T EGLN2 Missense_Mutation p.A173S 0.56 tolerated(0.23) benign(0.006) TCGA-05-5423-01 19 41944255 41944255 G A ATP5SL Missense_Mutation p.A34V 0.30 tolerated(0.34) benign(0.009) TCGA-05-5423-01 19 43258594 43258594 C A PSG8 Missense_Mutation p.K378N 0.21 tolerated(0.41) benign(0.019) TCGA-05-5423-01 19 5245847 5245847 T A PTPRS Missense_Mutation p.T310S 0.62 deleterious(0.04) probably_damaging(0.981) TCGA-05-5423-01 19 54377805 54377805 C T MYADM 3'UTR 0.46 TCGA-05-5423-01 19 58083957 58083957 C A ZNF416 Nonsense_Mutation p.E439* 0.52 TCGA-05-5423-01 19 9452452 9452452 C T ZNF559 Missense_Mutation p.H109Y 0.60 tolerated(0.11) possibly_damaging(0.727) TCGA-05-5423-01 1 112999135 112999135 C A CTTNBP2NL Missense_Mutation p.P341T 0.27 deleterious(0.02) benign(0.016) TCGA-05-5423-01 1 115273024 115273024 C A CSDE1 Missense_Mutation p.R450I 0.22 deleterious(0) probably_damaging(0.998) TCGA-05-5423-01 1 1159282 1159282 C A SDF4 Silent p.T131T 0.37 TCGA-05-5423-01 1 150266784 150266784 G T MRPS21 5'UTR 0.44 TCGA-05-5423-01 1 152059800 152059800 G A TCHHL1 Nonsense_Mutation p.Q120* 0.14 TCGA-05-5423-01 1 156222815 156222815 T A SMG5 Missense_Mutation p.M853L 0.33 tolerated(1) benign(0.244) TCGA-05-5423-01 1 156268936 156268936 C A VHLL Silent p.A15A 0.13 TCGA-05-5423-01 1 157514257 157514257 G T FCRL5 Silent p.T213T 0.20 TCGA-05-5423-01 1 159284274 159284274 G C OR10J3 Missense_Mutation p.P59R 0.47 deleterious(0) probably_damaging(0.988) TCGA-05-5423-01 1 162381856 162381856 C T SH2D1B 5'UTR 0.38 TCGA-05-5423-01 1 167798572 167798572 T C ADCY10 Missense_Mutation p.K1228R 0.21 tolerated(0.41) possibly_damaging(0.844) TCGA-05-5423-01 1 168510283 168510283 C A XCL2 Missense_Mutation p.M84I 0.47 tolerated(0.5) benign(0.003) TCGA-05-5423-01 1 17280755 17280755 C G CROCC Nonsense_Mutation p.S1075* 0.12 TCGA-05-5423-01 1 181706779 181706779 G C CACNA1E Missense_Mutation p.E1181Q 0.40 deleterious(0.01) possibly_damaging(0.775) TCGA-05-5423-01 1 215813937 215813937 C A USH2A Missense_Mutation p.L4977F 0.46 benign(0.002) TCGA-05-5423-01 1 220307776 220307776 G T IARS2 Nonsense_Mutation p.G624* 0.48 TCGA-05-5423-01 1 223990466 223990466 C T TP53BP2 Silent p.K321K 0.14 TCGA-05-5423-01 1 229781606 229781606 G T URB2 Missense_Mutation p.A1266S 0.43 tolerated(0.24) benign(0.058) TCGA-05-5423-01 1 232650286 232650286 G A SIPA1L2 Missense_Mutation p.A267V 0.40 tolerated(0.39) benign(0.06) TCGA-05-5423-01 1 238048740 238048740 G T ZP4 Missense_Mutation p.P371T 0.56 deleterious(0.03) possibly_damaging(0.831) TCGA-05-5423-01 1 245861603 245861603 C T KIF26B Missense_Mutation p.A2007V 0.52 tolerated(0.33) unknown(0) TCGA-05-5423-01 1 248525370 248525370 G A OR2T4 Missense_Mutation p.R163H 0.44 tolerated(0.3) benign(0.003) TCGA-05-5423-01 1 248652078 248652078 G C OR2T5 Missense_Mutation p.M63I 0.31 deleterious(0) possibly_damaging(0.792) TCGA-05-5423-01 1 248684959 248684959 C A OR2G6 Silent p.T4T 0.11 TCGA-05-5423-01 1 51829698 51829698 G C EPS15 Silent p.V733V 0.07 TCGA-05-5423-01 1 6194240 6194240 T A CHD5 Missense_Mutation p.K1031M 0.30 deleterious(0) probably_damaging(0.984) TCGA-05-5423-01 1 67147734 67147734 G T SGIP1 Missense_Mutation p.V333L 0.30 tolerated_low_confidence(0.26) benign(0) TCGA-05-5423-01 1 97839179 97839179 C A DPYD Nonsense_Mutation p.E666* 0.23 TCGA-05-5423-01 20 49510018 49510018 G A ADNP Silent p.S411S 0.08 TCGA-05-5423-01 20 49510304 49510304 G A ADNP Missense_Mutation p.S316F 0.06 deleterious(0) probably_damaging(0.969) TCGA-05-5423-01 21 15538748 15538748 C T LIPI Missense_Mutation p.G244E 0.42 deleterious(0) probably_damaging(1) TCGA-05-5423-01 21 17199412 17199412 C T USP25 Missense_Mutation p.P528L 0.37 deleterious(0.05) possibly_damaging(0.482) TCGA-05-5423-01 22 50555597 50555597 G A MOV10L1 Missense_Mutation p.R424H 0.61 tolerated(0.43) benign(0.023) TCGA-05-5423-01 2 107423368 107423368 G T ST6GAL2 Missense_Mutation p.H452Q 0.75 probably_damaging(0.998) TCGA-05-5423-01 2 189906364 189906364 C G COL5A2 Missense_Mutation p.G1194A 0.55 unknown(0) TCGA-05-5423-01 2 198358878 198358878 T C HSPD1 Intron 0.23 TCGA-05-5423-01 2 231774828 231774828 C A GPR55 Missense_Mutation p.D284Y 0.60 deleterious(0) probably_damaging(1) TCGA-05-5423-01 2 231774829 231774829 C A GPR55 Silent p.L283L 0.60 TCGA-05-5423-01 2 238462217 238462217 G T MLPH Silent p.V595V 0.58 TCGA-05-5423-01 2 27805334 27805334 C A C2orf16 Silent p.L1965L 0.55 TCGA-05-5423-01 2 32658718 32658719 - T BIRC6 Frame_Shift_Ins p.W1086Lfs*3 0.47 TCGA-05-5423-01 3 146311746 146311746 C T PLSCR5 Silent p.L138L 0.22 TCGA-05-5423-01 3 149205451 149205451 G T TM4SF4 Nonsense_Mutation p.G104* 0.68 TCGA-05-5423-01 3 170929013 170929013 G C TNIK Missense_Mutation p.I66M 0.15 deleterious(0) unknown(0) TCGA-05-5423-01 3 9034680 9034680 G T SRGAP3 Missense_Mutation p.P823Q 0.19 deleterious(0.01) possibly_damaging(0.467) TCGA-05-5423-01 4 164271827 164271827 A T NPY5R Silent p.S134S 0.26 TCGA-05-5423-01 4 20618729 20618729 C T SLIT2 Silent p.P1348P 0.46 TCGA-05-5423-01 4 2958508 2958508 G C NOP14 Missense_Mutation p.L121V 0.14 deleterious(0) probably_damaging(0.986) TCGA-05-5423-01 4 52861716 52861716 C A LRRC66 Missense_Mutation p.C491F 0.21 tolerated(0.7) benign(0.002) TCGA-05-5423-01 4 62845485 62845485 C A LPHN3 Missense_Mutation p.Q936K 0.16 tolerated(0.41) probably_damaging(0.93) TCGA-05-5423-01 4 68490853 68490853 T A UBA6 Silent p.G857G 0.27 TCGA-05-5423-01 4 77817883 77817883 C A SOWAHB Missense_Mutation p.A374S 0.18 tolerated(0.26) benign(0) TCGA-05-5423-01 4 81884833 81884833 G A C4orf22 3'Flank 0.36 TCGA-05-5423-01 4 95162158 95162158 G T SMARCAD1 Splice_Site p.X235_splice 0.17 TCGA-05-5423-01 4 96256587 96256587 A G UNC5C Missense_Mutation p.V107A 0.17 tolerated(0.14) benign(0.23) TCGA-05-5423-01 5 118484728 118484728 G T DMXL1 Missense_Mutation p.R1069I 0.20 tolerated(0.41) benign(0.121) TCGA-05-5423-01 5 134056703 134056703 G C SEC24A Missense_Mutation p.V996L 0.14 tolerated(0.07) benign(0.006) TCGA-05-5423-01 5 140724004 140724004 C A PCDHGA3 Missense_Mutation p.T135K 0.25 tolerated_low_confidence(0.61) benign(0.004) TCGA-05-5423-01 5 140753772 140753772 A T PCDHGA6 Missense_Mutation p.K41I 0.14 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-05-5423-01 5 140772574 140772574 G T PCDHGA8 Missense_Mutation p.R65L 0.24 deleterious_low_confidence(0) probably_damaging(0.909) TCGA-05-5423-01 5 160034041 160034041 C T ATP10B Missense_Mutation p.R964H 0.19 tolerated(0.61) benign(0.001) TCGA-05-5423-01 5 169810738 169810738 G T KCNMB1 Missense_Mutation p.A84D 0.17 deleterious(0.03) benign(0.175) TCGA-05-5423-01 5 178418906 178418906 C G GRM6 Missense_Mutation p.S228T 0.24 tolerated(0.54) possibly_damaging(0.593) TCGA-05-5423-01 5 26906151 26906151 C T CDH9 Missense_Mutation p.G243D 0.28 deleterious(0) probably_damaging(1) TCGA-05-5423-01 5 35991432 35991432 G T UGT3A1 5'UTR 0.63 TCGA-05-5423-01 5 59893544 59893544 C G DEPDC1B 3'UTR 0.48 TCGA-05-5423-01 5 75913949 75913949 T C F2RL2 Missense_Mutation p.I195V 0.31 tolerated(0.22) benign(0.036) TCGA-05-5423-01 5 7866983 7866983 G C FASTKD3 Missense_Mutation p.P405R 0.25 deleterious(0.01) probably_damaging(0.944) TCGA-05-5423-01 5 9629408 9629408 A T TAS2R1 Missense_Mutation p.F246Y 0.46 deleterious(0.01) possibly_damaging(0.803) TCGA-05-5423-01 6 128319937 128319937 C A PTPRK Missense_Mutation p.R869S 0.57 deleterious(0) probably_damaging(0.955) TCGA-05-5423-01 6 165806181 165806181 A T PDE10A Missense_Mutation p.M537K 0.23 deleterious(0) benign(0.401) TCGA-05-5423-01 6 84603269 84603269 G T CYB5R4 Missense_Mutation p.M86I 0.54 tolerated(0.07) benign(0.204) TCGA-05-5423-01 7 107710286 107710286 G C LAMB4 Missense_Mutation p.S723R 0.43 tolerated(0.1) benign(0.025) TCGA-05-5423-01 7 127255388 127255388 G T PAX4 Intron 0.19 TCGA-05-5423-01 7 142649603 142649603 G T KEL Missense_Mutation p.P399Q 0.29 tolerated(0.12) possibly_damaging(0.734) TCGA-05-5423-01 7 143001797 143001797 G T CASP2 Missense_Mutation p.G383V 0.44 deleterious(0) probably_damaging(1) TCGA-05-5423-01 7 143826473 143826473 A G OR2A14 Missense_Mutation p.T90A 0.21 tolerated(0.17) benign(0.01) TCGA-05-5423-01 7 149482801 149482801 G C SSPO RNA 0.45 TCGA-05-5423-01 7 150739111 150739111 G A ABCB8 Missense_Mutation p.D561N 0.06 tolerated(0.07) possibly_damaging(0.721) TCGA-05-5423-01 7 18625111 18625111 G T HDAC9 Missense_Mutation p.R77L 0.47 tolerated(0.11) probably_damaging(0.999) TCGA-05-5423-01 7 28997377 28997377 G T AC005013.5 RNA 0.15 TCGA-05-5423-01 7 42949192 42949192 G A C7orf25 3'UTR 0.29 TCGA-05-5423-01 7 47976473 47976473 G T PKD1L1 Missense_Mutation p.A123E 0.25 deleterious_low_confidence(0.01) benign(0.018) TCGA-05-5423-01 7 4949568 4949568 C T MMD2 Missense_Mutation p.E185K 0.49 deleterious(0) probably_damaging(0.986) TCGA-05-5423-01 7 55259441 55259441 G T EGFR Missense_Mutation p.L833F 0.23 deleterious(0) probably_damaging(0.998) TCGA-05-5423-01 7 55259524 55259524 T A EGFR Missense_Mutation p.L861Q 0.22 deleterious(0) possibly_damaging(0.831) TCGA-05-5423-01 7 69364318 69364318 C T AUTS2 Missense_Mutation p.T119M 0.29 deleterious(0.02) benign(0.312) TCGA-05-5423-01 7 82579138 82579138 T A PCLO Missense_Mutation p.D3589V 0.55 unknown(0) TCGA-05-5423-01 8 124824817 124824817 A G FAM91A1 Missense_Mutation p.Q797R 0.66 tolerated(0.37) benign(0.007) TCGA-05-5423-01 8 143560728 143560728 G C BAI1 Missense_Mutation p.V536L 0.81 tolerated(0.13) benign(0.442) TCGA-05-5423-01 8 17434764 17434764 G C PDGFRL Translation_Start_Site p.M1? 0.31 deleterious(0.01) benign(0.01) TCGA-05-5423-01 8 23429084 23429084 G T SLC25A37 Missense_Mutation p.G245W 0.47 deleterious(0) probably_damaging(1) TCGA-05-5423-01 8 24775338 24775338 C T NEFM Missense_Mutation p.P657L 0.59 deleterious(0.01) benign(0.047) TCGA-05-5423-01 8 48711844 48711844 C G PRKDC Silent p.G3407G 0.57 TCGA-05-5423-01 8 74585457 74585457 C A STAU2 Nonsense_Mutation p.E99* 0.74 TCGA-05-5423-01 8 74585458 74585458 C A STAU2 Silent p.V98V 0.74 TCGA-05-5423-01 9 100353718 100353718 G T TMOD1 Splice_Site p.X339_splice 0.30 TCGA-05-5423-01 9 101798476 101798476 C T COL15A1 Missense_Mutation p.R772W 0.27 tolerated(0.07) benign(0.18) TCGA-05-5423-01 9 35712916 35712916 C G TLN1 Silent p.L1159L 0.50 TCGA-05-5423-01 9 84228380 84228380 G A TLE1 Silent p.D325D 0.24 TCGA-05-5423-01 X 129629590 129629590 C A RP1-274L7.1 Intron 0.66 TCGA-05-5423-01 X 134988657 134988657 G A SAGE1 Missense_Mutation p.R228Q 0.41 tolerated(0.18) benign(0) TCGA-05-5423-01 X 24537108 24537108 G T PDK3 Silent p.L218L 0.75 TCGA-05-5423-01 X 3229355 3229355 G A MXRA5 Missense_Mutation p.R2297C 0.21 deleterious(0) probably_damaging(1) TCGA-05-5423-01 X 45051168 45051168 C A CXorf36 Missense_Mutation p.R109L 0.67 deleterious(0) probably_damaging(0.99) TCGA-05-5423-01 X 67937333 67937333 C A STARD8 Missense_Mutation p.Q193K 0.85 tolerated(0.27) benign(0.006) TCGA-05-5423-01 X 77912915 77912915 C A ZCCHC5 Missense_Mutation p.G335W 0.75 tolerated(0.09) benign(0.071) TCGA-05-5423-01 X 83723704 83723704 G A HDX Missense_Mutation p.P343S 0.06 tolerated(0.54) benign(0.001) TCGA-05-5423-01 X 86877364 86877364 A T KLHL4 Missense_Mutation p.R360W 0.75 deleterious(0) probably_damaging(1) TCGA-05-5425-01 10 101122151 101122151 C T CNNM1 Nonsense_Mutation p.Q676* 0.14 TCGA-05-5425-01 10 102046009 102046009 C A BLOC1S2 Intron 0.19 TCGA-05-5425-01 10 106937822 106937823 - G SORCS3 Splice_Site p.X635_splice 0.33 TCGA-05-5425-01 10 113933594 113933594 C A GPAM Missense_Mutation p.E141D 0.17 tolerated(0.35) benign(0.001) TCGA-05-5425-01 10 118101714 118101714 G T CCDC172 Splice_Site p.X150_splice 0.32 TCGA-05-5425-01 10 118231325 118231325 C A PNLIPRP3 Missense_Mutation p.T369N 0.39 tolerated(0.08) benign(0.1) TCGA-05-5425-01 10 118355831 118355831 A T PNLIPRP1 Missense_Mutation p.T191S 0.18 deleterious(0.05) possibly_damaging(0.697) TCGA-05-5425-01 10 118460560 118460560 T A HSPA12A Missense_Mutation p.H112L 0.10 deleterious(0) benign(0.138) TCGA-05-5425-01 10 120353579 120353579 C A PRLHR 3'UTR 0.18 TCGA-05-5425-01 10 124268261 124268261 G - HTRA1 Frame_Shift_Del p.E366Sfs*22 0.13 TCGA-05-5425-01 10 124358499 124358499 G T DMBT1 Missense_Mutation p.V1056F 0.15 tolerated(0.36) unknown(0) TCGA-05-5425-01 10 127755283 127755283 C A ADAM12 Intron 0.42 TCGA-05-5425-01 10 14572509 14572510 GG A FAM107B Frame_Shift_Del p.P159Hfs*24 0.12 TCGA-05-5425-01 10 15648340 15648340 C A ITGA8 Missense_Mutation p.G616C 0.09 deleterious(0.01) probably_damaging(0.954) TCGA-05-5425-01 10 25887454 25887454 C A GPR158 Missense_Mutation p.P967T 0.20 tolerated(0.74) benign(0.002) TCGA-05-5425-01 10 28970376 28970376 C T BAMBI Missense_Mutation p.S89F 0.06 deleterious(0.03) benign(0.446) TCGA-05-5425-01 10 43325851 43325851 G T BMS1 Missense_Mutation p.R1200L 0.19 tolerated(0.16) benign(0.027) TCGA-05-5425-01 10 48370539 48370539 G C ZNF488 Missense_Mutation p.E3Q 0.16 tolerated_low_confidence(0.38) benign(0.021) TCGA-05-5425-01 10 48388176 48388176 G A RBP3 Missense_Mutation p.A901V 0.16 deleterious(0.02) benign(0.001) TCGA-05-5425-01 10 50872957 50872957 T C CHAT Silent p.S704S 0.20 TCGA-05-5425-01 10 60573865 60573865 C A BICC1 Intron 0.33 TCGA-05-5425-01 10 63850762 63850762 C A ARID5B Missense_Mutation p.P514T 0.22 tolerated(0.46) possibly_damaging(0.604) TCGA-05-5425-01 10 70139235 70139235 C A RUFY2 Missense_Mutation p.R419L 0.24 deleterious(0.01) benign(0.313) TCGA-05-5425-01 10 73055624 73055624 G T UNC5B Silent p.P744P 0.16 TCGA-05-5425-01 10 73544070 73544070 G A CDH23 Missense_Mutation p.G1804R 0.17 deleterious(0) probably_damaging(0.991) TCGA-05-5425-01 10 7774354 7774354 T A ITIH2 Missense_Mutation p.D567E 0.26 tolerated(0.59) benign(0.002) TCGA-05-5425-01 10 7776944 7776944 C A ITIH2 Missense_Mutation p.S616Y 0.12 deleterious(0) probably_damaging(0.971) TCGA-05-5425-01 10 84738801 84738801 G T NRG3 Missense_Mutation p.G503V 0.15 deleterious(0.01) possibly_damaging(0.799) TCGA-05-5425-01 10 86008764 86008764 C A RGR Missense_Mutation p.A112D 0.09 deleterious(0) probably_damaging(0.994) TCGA-05-5425-01 10 88419107 88419107 T A OPN4 Missense_Mutation p.F239I 0.14 deleterious(0.01) probably_damaging(1) TCGA-05-5425-01 10 94452278 94452278 A T HHEX Missense_Mutation p.K172M 0.21 deleterious(0) probably_damaging(0.979) TCGA-05-5425-01 10 96495289 96495289 G T CYP2C18 3'UTR 0.25 TCGA-05-5425-01 10 99130006 99130006 C A RRP12 Silent p.L905L 0.33 TCGA-05-5425-01 11 100226948 100226948 G A CNTN5 Nonsense_Mutation p.W1100* 0.68 TCGA-05-5425-01 11 1024936 1024936 C G MUC6 Missense_Mutation p.D1045H 0.10 unknown(0) TCGA-05-5425-01 11 102649993 102649993 G T MMP10 Silent p.S149S 0.21 TCGA-05-5425-01 11 108383784 108383784 C T EXPH5 Missense_Mutation p.R817K 0.07 tolerated(0.16) benign(0.038) TCGA-05-5425-01 11 114392937 114392937 A G NXPE1 Missense_Mutation p.L324P 0.45 deleterious(0.03) benign(0.412) TCGA-05-5425-01 11 117332232 117332232 G T DSCAML1 Missense_Mutation p.R1176S 0.33 deleterious(0.04) possibly_damaging(0.548) TCGA-05-5425-01 11 118261406 118261406 G T UBE4A Missense_Mutation p.D942Y 0.35 deleterious(0) probably_damaging(1) TCGA-05-5425-01 11 126142964 126142964 G T FOXRED1 Missense_Mutation p.R136L 0.40 deleterious(0) probably_damaging(0.983) TCGA-05-5425-01 11 20070532 20070532 C T NAV2 Silent p.N1410N 0.11 TCGA-05-5425-01 11 22397560 22397560 G C SLC17A6 Missense_Mutation p.V403L 0.21 deleterious(0.04) benign(0.042) TCGA-05-5425-01 11 26552836 26552836 G A ANO3 Silent p.E274E 0.11 TCGA-05-5425-01 11 30033147 30033147 T A KCNA4 Missense_Mutation p.E360V 0.09 tolerated(0.28) benign(0.011) TCGA-05-5425-01 11 31784994 31784994 C T ELP4 Intron 0.10 TCGA-05-5425-01 11 32456435 32456435 C T WT1 Missense_Mutation p.E153K 0.25 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-05-5425-01 11 44069626 44069626 C G ACCSL Missense_Mutation p.Q14E 0.25 deleterious(0) probably_damaging(0.985) TCGA-05-5425-01 11 5221650 5221650 A T OR51V1 Missense_Mutation p.L94Q 0.27 deleterious(0) probably_damaging(0.988) TCGA-05-5425-01 11 55433258 55433258 G T OR4C6 Missense_Mutation p.V206L 0.42 tolerated_low_confidence(1) benign(0.015) TCGA-05-5425-01 11 55579239 55579239 G A OR5L1 Silent p.V99V 0.07 TCGA-05-5425-01 11 55594749 55594749 G T OR5L2 Missense_Mutation p.D19Y 0.05 deleterious(0) possibly_damaging(0.707) TCGA-05-5425-01 11 55607068 55607068 A G OR5D16 Missense_Mutation p.T281A 0.17 tolerated(0.07) possibly_damaging(0.651) TCGA-05-5425-01 11 55658995 55658995 G C TRIM51 Missense_Mutation p.E416Q 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-05-5425-01 11 55861360 55861360 G - OR8I2 Frame_Shift_Del p.G193Afs*5 0.31 TCGA-05-5425-01 11 55861580 55861580 C A OR8I2 Nonsense_Mutation p.S266* 0.42 TCGA-05-5425-01 11 55904780 55904780 G T OR8J3 Silent p.R139R 0.47 TCGA-05-5425-01 11 55999894 55999894 G C OR5T2 Silent p.S256S 0.31 TCGA-05-5425-01 11 56113723 56113723 G T OR8K1 Missense_Mutation p.R70I 0.15 deleterious_low_confidence(0.01) benign(0.396) TCGA-05-5425-01 11 56128118 56128118 C T OR8J1 Silent p.Y132Y 0.30 TCGA-05-5425-01 11 56143770 56143770 C T OR8U1 Missense_Mutation p.A224V 0.09 deleterious(0.02) possibly_damaging(0.692) TCGA-05-5425-01 11 56432009 56432009 C A OR5AR1 Missense_Mutation p.P283H 0.27 deleterious(0) probably_damaging(0.968) TCGA-05-5425-01 11 60183159 60183159 T A MS4A14 Missense_Mutation p.S273T 0.43 tolerated(1) benign(0.035) TCGA-05-5425-01 11 60641165 60641165 C T ZP1 Missense_Mutation p.P497S 0.23 tolerated(0.14) benign(0.422) TCGA-05-5425-01 11 61496420 61496420 G C DAGLA Missense_Mutation p.L263F 0.12 tolerated(0.19) possibly_damaging(0.599) TCGA-05-5425-01 11 6221384 6221384 G A OR52W1 Missense_Mutation p.E311K 0.10 tolerated(0.68) benign(0.001) TCGA-05-5425-01 11 62290506 62290506 C A AHNAK Missense_Mutation p.V3795F 0.42 probably_damaging(0.991) TCGA-05-5425-01 11 64789251 64789251 T C ARL2 Missense_Mutation p.V160A 0.33 tolerated(0.1) benign(0.234) TCGA-05-5425-01 11 65269314 65269314 G T MALAT1 RNA 0.31 TCGA-05-5425-01 11 65819889 65819889 G T SF3B2 Nonsense_Mutation p.E12* 0.14 TCGA-05-5425-01 11 66108315 66108315 C A BRMS1 Silent p.T155T 0.39 TCGA-05-5425-01 11 6640051 6640052 GA - TPP1 Frame_Shift_Del p.S62Gfs*25 0.17 TCGA-05-5425-01 11 67018137 67018137 A G KDM2A Missense_Mutation p.N879S 0.28 tolerated(0.82) benign(0.003) TCGA-05-5425-01 11 71277090 71277090 G A KRTAP5-10 Missense_Mutation p.G153S 0.05 unknown(0) TCGA-05-5425-01 11 75155473 75155473 G A GDPD5 Missense_Mutation p.A261V 0.08 deleterious(0.03) possibly_damaging(0.58) TCGA-05-5425-01 11 83585503 83585503 G T DLG2 Missense_Mutation p.Q509K 0.20 tolerated(0.9) benign(0.047) TCGA-05-5425-01 11 88780650 88780650 C T GRM5 Missense_Mutation p.D131N 0.12 tolerated(0.15) possibly_damaging(0.893) TCGA-05-5425-01 11 92538430 92538430 C A FAT3 Missense_Mutation p.T3003N 0.40 probably_damaging(0.969) TCGA-05-5425-01 11 92538488 92538488 G C FAT3 Silent p.V3022V 0.43 TCGA-05-5425-01 11 94759390 94759390 G A KDM4E Silent p.L223L 0.30 TCGA-05-5425-01 11 99942542 99942542 G T CNTN5 Missense_Mutation p.A469S 0.17 tolerated(1) benign(0.109) TCGA-05-5425-01 12 10277985 10277985 T A CLEC7A Missense_Mutation p.S135C 0.23 deleterious(0.01) possibly_damaging(0.907) TCGA-05-5425-01 12 103700025 103700025 C A C12orf42 Missense_Mutation p.D120Y 0.23 deleterious(0) possibly_damaging(0.731) TCGA-05-5425-01 12 108010913 108010913 C A BTBD11 Silent p.G683G 0.37 TCGA-05-5425-01 12 108912393 108912393 A T FICD Missense_Mutation p.H173L 0.40 deleterious(0.02) benign(0.082) TCGA-05-5425-01 12 109862553 109862553 G T MYO1H Missense_Mutation p.V533L 0.19 tolerated(0.21) benign(0.384) TCGA-05-5425-01 12 110905973 110905974 - G GPN3 Intron 0.11 TCGA-05-5425-01 12 122612480 122612480 G T MLXIP Missense_Mutation p.G191C 0.07 deleterious(0) probably_damaging(1) TCGA-05-5425-01 12 124232159 124232159 G T ATP6V0A2 Missense_Mutation p.W537C 0.32 deleterious(0) probably_damaging(1) TCGA-05-5425-01 12 131439195 131439195 G T GPR133 Missense_Mutation p.Q31H 0.11 tolerated_low_confidence(0.14) benign(0.004) TCGA-05-5425-01 12 132426239 132426239 G T PUS1 Missense_Mutation p.R316L 0.27 tolerated(0.07) benign(0.312) TCGA-05-5425-01 12 18234319 18234319 C A RERGL Missense_Mutation p.A142S 0.44 deleterious(0.02) benign(0.186) TCGA-05-5425-01 12 20890125 20890125 C A SLCO1C1 Silent p.P489P 0.42 TCGA-05-5425-01 12 25672876 25672876 G A IFLTD1 Missense_Mutation p.A311V 0.14 tolerated(0.17) benign(0.007) TCGA-05-5425-01 12 26775287 26775287 T C ITPR2 Silent p.L1058L 0.23 TCGA-05-5425-01 12 29614865 29614865 A G OVCH1-AS1 Intron 0.05 TCGA-05-5425-01 12 30863316 30863316 A T CAPRIN2 Silent p.R918R 0.35 TCGA-05-5425-01 12 32908772 32908772 G A YARS2 Missense_Mutation p.R13W 0.16 tolerated_low_confidence(0.1) benign(0.001) TCGA-05-5425-01 12 32974458 32974458 G C PKP2 Nonsense_Mutation p.Y659* 0.09 TCGA-05-5425-01 12 33532808 33532808 A T SYT10 Missense_Mutation p.Y487N 0.11 tolerated(0.47) benign(0.426) TCGA-05-5425-01 12 41312565 41312565 G A CNTN1 Silent p.P73P 0.16 TCGA-05-5425-01 12 41374864 41374864 A T CNTN1 Missense_Mutation p.K653M 0.33 tolerated(0.06) probably_damaging(0.958) TCGA-05-5425-01 12 43944935 43944935 C A ADAMTS20 Missense_Mutation p.R77L 0.23 deleterious(0.02) benign(0.363) TCGA-05-5425-01 12 44139883 44139883 C T PUS7L Missense_Mutation p.R410K 0.08 tolerated(0.89) benign(0.006) TCGA-05-5425-01 12 4736765 4736765 A T AKAP3 Missense_Mutation p.Y435N 0.06 tolerated(0.3) possibly_damaging(0.632) TCGA-05-5425-01 12 48533133 48533133 G A PFKM Splice_Site p.X447_splice 0.08 TCGA-05-5425-01 12 49220592 49220592 G T CACNB3 Silent p.L315L 0.38 TCGA-05-5425-01 12 49416430 49416430 A C KMT2D Missense_Mutation p.I5427M 0.05 unknown(0) TCGA-05-5425-01 12 49722798 49722798 G T TROAP Missense_Mutation p.G327V 0.14 deleterious(0) probably_damaging(1) TCGA-05-5425-01 12 51495754 51495754 G T TFCP2 Missense_Mutation p.A372E 0.17 deleterious(0.01) probably_damaging(0.976) TCGA-05-5425-01 12 52912730 52912730 T A KRT5 Missense_Mutation p.K257M 0.13 deleterious(0) probably_damaging(0.995) TCGA-05-5425-01 12 53680397 53680397 G T ESPL1 Missense_Mutation p.G1293C 0.25 deleterious(0.01) possibly_damaging(0.832) TCGA-05-5425-01 12 55759166 55759166 C A OR6C75 Missense_Mutation p.S91Y 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.721) TCGA-05-5425-01 12 56092167 56092167 C A ITGA7 Missense_Mutation p.D402Y 0.22 deleterious(0) probably_damaging(0.994) TCGA-05-5425-01 12 57396984 57396984 C T ZBTB39 Missense_Mutation p.G573E 0.17 tolerated(0.11) probably_damaging(0.999) TCGA-05-5425-01 12 57431656 57431657 TC - MYO1A Frame_Shift_Del p.D653Pfs*5 0.26 TCGA-05-5425-01 12 57556762 57556762 C T LRP1 Silent p.C842C 0.16 TCGA-05-5425-01 12 58124650 58124650 G C AGAP2 Missense_Mutation p.I744M 0.23 tolerated(0.15) benign(0.216) TCGA-05-5425-01 12 59266403 59266403 A G LRIG3 Missense_Mutation p.L1104S 0.17 tolerated_low_confidence(0.1) benign(0.004) TCGA-05-5425-01 12 64588415 64588415 G T C12orf66 Missense_Mutation p.P182H 0.28 deleterious(0.01) probably_damaging(0.988) TCGA-05-5425-01 12 64615957 64615957 A T C12orf66 Missense_Mutation p.F21I 0.12 deleterious(0) probably_damaging(0.976) TCGA-05-5425-01 12 78574791 78574791 A T NAV3 Silent p.L1864L 0.07 TCGA-05-5425-01 12 8201376 8201376 G C FOXJ2 Missense_Mutation p.E437Q 0.17 deleterious(0.01) probably_damaging(0.985) TCGA-05-5425-01 12 85255538 85255538 T G SLC6A15 Missense_Mutation p.N689T 0.37 tolerated_low_confidence(0.59) benign(0.002) TCGA-05-5425-01 12 85264451 85264451 T A SLC6A15 Splice_Site p.X435_splice 0.42 TCGA-05-5425-01 12 91371911 91371911 G T EPYC Silent p.P98P 0.23 TCGA-05-5425-01 12 91449431 91449431 T C KERA Missense_Mutation p.R210G 0.09 tolerated(1) benign(0.001) TCGA-05-5425-01 12 91502155 91502155 G C LUM Missense_Mutation p.S201C 0.06 deleterious(0.02) benign(0.353) TCGA-05-5425-01 12 9316324 9316324 C T PZP Silent p.E892E 0.13 TCGA-05-5425-01 12 94976065 94976065 G T TMCC3 Missense_Mutation p.R110S 0.30 deleterious(0) probably_damaging(0.996) TCGA-05-5425-01 12 97885685 97885685 A G MIR1251 RNA 0.11 TCGA-05-5425-01 13 101710344 101710344 G T NALCN Missense_Mutation p.A1657E 0.39 tolerated(0.82) benign(0.007) TCGA-05-5425-01 13 110804758 110804758 G T COL4A1 Missense_Mutation p.H1617Q 0.26 unknown(0) TCGA-05-5425-01 13 110866325 110866325 C A COL4A1 Missense_Mutation p.G61V 0.30 unknown(0) TCGA-05-5425-01 13 113210435 113210435 T C TUBGCP3 Missense_Mutation p.T218A 0.46 tolerated(0.31) benign(0.001) TCGA-05-5425-01 13 38161989 38161989 C A POSTN Missense_Mutation p.L192F 0.13 tolerated(0.6) probably_damaging(0.968) TCGA-05-5425-01 13 39542642 39542642 C A STOML3 Missense_Mutation p.W182C 0.22 deleterious(0) probably_damaging(0.983) TCGA-05-5425-01 13 47354121 47354121 C G ESD Missense_Mutation p.W183C 0.36 deleterious(0) probably_damaging(0.995) TCGA-05-5425-01 13 47466575 47466575 G T HTR2A Missense_Mutation p.S188Y 0.17 deleterious(0) probably_damaging(1) TCGA-05-5425-01 13 52534376 52534376 C T ATP7B Missense_Mutation p.E677K 0.26 tolerated(0.47) benign(0.002) TCGA-05-5425-01 13 75900386 75900386 C A TBC1D4 Missense_Mutation p.R660S 0.32 tolerated(1) benign(0.004) TCGA-05-5425-01 13 75900391 75900391 C T TBC1D4 Missense_Mutation p.G659R 0.18 tolerated(0.1) benign(0.128) TCGA-05-5425-01 13 96230177 96230177 C A CLDN10 Missense_Mutation p.S199Y 0.34 tolerated(0.12) benign(0.318) TCGA-05-5425-01 13 99948054 99948054 A T GPR183 Missense_Mutation p.Y116N 0.52 deleterious(0) probably_damaging(1) TCGA-05-5425-01 14 105416670 105416670 G T AHNAK2 Silent p.L1706L 0.14 TCGA-05-5425-01 14 105416671 105416671 A T AHNAK2 Missense_Mutation p.L1706H 0.16 probably_damaging(0.992) TCGA-05-5425-01 14 107078391 107078391 G T IGHV1-58 Silent p.A111A 0.04 TCGA-05-5425-01 14 19378090 19378090 G T OR11H12 Missense_Mutation p.C166F 0.04 tolerated(0.51) benign(0.004) TCGA-05-5425-01 14 20404494 20404494 C A OR4K1 Silent p.I223I 0.10 TCGA-05-5425-01 14 24838594 24838594 G A NFATC4 Intron 0.08 TCGA-05-5425-01 14 25101073 25101073 A C GZMB Silent p.T197T 0.06 TCGA-05-5425-01 14 31570180 31570180 G A HECTD1 Missense_Mutation p.R2597C 0.09 deleterious(0) probably_damaging(0.995) TCGA-05-5425-01 14 39639334 39639334 T A TRAPPC6B 5'UTR 0.26 TCGA-05-5425-01 14 42360558 42360558 C A LRFN5 Silent p.L497L 0.28 TCGA-05-5425-01 14 45605533 45605533 G T FANCM Missense_Mutation p.R100L 0.17 deleterious(0.01) benign(0.111) TCGA-05-5425-01 14 47121024 47121024 C A RPL10L 5'UTR 0.17 TCGA-05-5425-01 14 52433382 52433382 A - GNG2 Frame_Shift_Del p.K65Sfs*14 0.08 TCGA-05-5425-01 14 55650349 55650349 C G DLGAP5 Missense_Mutation p.G121R 0.31 deleterious(0) probably_damaging(0.998) TCGA-05-5425-01 14 63269193 63269193 A C KCNH5 Missense_Mutation p.L559R 0.12 tolerated(0.06) probably_damaging(0.951) TCGA-05-5425-01 14 64735616 64735616 A G ESR2 Silent p.Y183Y 0.20 TCGA-05-5425-01 14 70714022 70714022 G T ADAM21P1 RNA 0.28 TCGA-05-5425-01 14 76211925 76211925 G T TTLL5 Splice_Site p.X496_splice 0.19 TCGA-05-5425-01 14 79432593 79432593 C T NRXN3 Missense_Mutation p.T501I 0.12 deleterious(0.01) probably_damaging(0.983) TCGA-05-5425-01 14 88407756 88407756 C T GALC Missense_Mutation p.R606K 0.07 tolerated(0.83) benign(0) TCGA-05-5425-01 14 91360853 91360853 G A RPS6KA5 Silent p.F516F 0.07 TCGA-05-5425-01 14 94155059 94155059 G A UNC79 Missense_Mutation p.G2182R 0.10 deleterious(0) probably_damaging(1) TCGA-05-5425-01 15 102358610 102358610 G T OR4F15 Missense_Mutation p.C74F 0.07 deleterious_low_confidence(0) benign(0.019) TCGA-05-5425-01 15 20649622 20649622 G T HERC2P3 RNA 0.10 TCGA-05-5425-01 15 26806155 26806155 C A GABRB3 Missense_Mutation p.G335V 0.15 deleterious(0.02) probably_damaging(0.978) TCGA-05-5425-01 15 34023790 34023790 C T RYR3 Missense_Mutation p.S2440F 0.18 benign(0.24) TCGA-05-5425-01 15 34157385 34157385 C A RYR3 Silent p.A4857A 0.28 TCGA-05-5425-01 15 65489641 65489641 C T CILP Missense_Mutation p.D995N 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-05-5425-01 15 65491332 65491332 C A CILP Missense_Mutation p.R431L 0.25 tolerated(0.51) benign(0.131) TCGA-05-5425-01 15 65682492 65682492 C A IGDCC4 Splice_Site p.X803_splice 0.13 TCGA-05-5425-01 15 66729175 66729175 G T MAP2K1 Missense_Mutation p.G128V 0.19 deleterious(0) probably_damaging(0.999) TCGA-05-5425-01 15 72190946 72190946 G A MYO9A Missense_Mutation p.P1300S 0.36 deleterious_low_confidence(0.04) possibly_damaging(0.829) TCGA-05-5425-01 15 81637141 81637141 G A TMC3 Missense_Mutation p.P495L 0.14 tolerated(0.18) benign(0.001) TCGA-05-5425-01 15 84286922 84286922 G A SH3GL3 Silent p.G309G 0.32 TCGA-05-5425-01 15 87531233 87531233 T - AGBL1 Frame_Shift_Del p.F1034Sfs*21 0.08 TCGA-05-5425-01 15 88472601 88472601 C G NTRK3 Missense_Mutation p.G652R 0.17 tolerated(0.08) probably_damaging(0.954) TCGA-05-5425-01 15 88524502 88524502 C G NTRK3 Intron 0.38 TCGA-05-5425-01 15 92988137 92988137 C A ST8SIA2 Missense_Mutation p.R274S 0.12 possibly_damaging(0.715) TCGA-05-5425-01 16 14687236 14687236 C A PARN Splice_Site p.X281_splice 0.15 TCGA-05-5425-01 16 17202798 17202798 G T XYLT1 Silent p.V878V 0.24 TCGA-05-5425-01 16 17292209 17292209 G T XYLT1 Silent p.V383V 0.13 TCGA-05-5425-01 16 21213478 21213478 G A ZP2 Nonsense_Mutation p.Q412* 0.12 TCGA-05-5425-01 16 223544 223544 C T HBA2 Missense_Mutation p.S125F 0.14 deleterious(0) probably_damaging(0.997) TCGA-05-5425-01 16 2239498 2239498 C G CASKIN1 Silent p.A104A 0.17 TCGA-05-5425-01 16 23540889 23540889 G A EARS2 Missense_Mutation p.A429V 0.12 deleterious(0.03) benign(0.005) TCGA-05-5425-01 16 23712312 23712312 G A ERN2 Silent p.L491L 0.11 TCGA-05-5425-01 16 23713533 23713533 C A ERN2 Silent p.G429G 0.24 TCGA-05-5425-01 16 25235883 25235883 G T AQP8 Silent p.V196V 0.09 TCGA-05-5425-01 16 31371363 31371363 G T ITGAX Silent p.T228T 0.20 TCGA-05-5425-01 16 3406339 3406339 C T OR2C1 Silent p.T133T 0.12 TCGA-05-5425-01 16 3640110 3640110 C A SLX4 Nonsense_Mutation p.E1177* 0.19 TCGA-05-5425-01 16 421926 421926 C A TMEM8A 3'UTR 0.20 TCGA-05-5425-01 16 46743503 46743503 C A MYLK3 Missense_Mutation p.R783L 0.34 deleterious(0.01) possibly_damaging(0.701) TCGA-05-5425-01 16 46781731 46781731 G A MYLK3 Silent p.I125I 0.16 TCGA-05-5425-01 16 47622890 47622890 G T PHKB Missense_Mutation p.Q315H 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-05-5425-01 16 55613023 55613023 G C LPCAT2 Silent p.L439L 0.05 TCGA-05-5425-01 16 64981687 64981687 T C CDH11 Missense_Mutation p.Y737C 0.22 deleterious(0) probably_damaging(0.999) TCGA-05-5425-01 16 66842457 66842457 C G NAE1 Missense_Mutation p.D433H 0.08 deleterious(0) probably_damaging(0.952) TCGA-05-5425-01 16 66918897 66918897 G T PDP2 Missense_Mutation p.R237I 0.36 deleterious(0) probably_damaging(0.999) TCGA-05-5425-01 16 67179530 67179530 A T C16orf70 Missense_Mutation p.R370W 0.22 deleterious(0) probably_damaging(1) TCGA-05-5425-01 16 68598220 68598220 A T ZFP90 Silent p.T510T 0.37 TCGA-05-5425-01 16 74526856 74526856 T C GLG1 Silent p.R411R 0.09 TCGA-05-5425-01 16 75665353 75665353 C A KARS Missense_Mutation p.G433W 0.23 deleterious(0) probably_damaging(0.986) TCGA-05-5425-01 16 76569483 76569483 C A CNTNAP4 Silent p.R860R 0.24 TCGA-05-5425-01 16 86612497 86612497 G A FOXL1 Silent p.A56A 0.19 TCGA-05-5425-01 17 10206554 10206554 G T MYH13 Missense_Mutation p.Q1876K 0.07 deleterious(0) probably_damaging(0.973) TCGA-05-5425-01 17 10222286 10222286 G T MYH13 Missense_Mutation p.L1187M 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-05-5425-01 17 10222287 10222287 G T MYH13 Silent p.T1186T 0.10 TCGA-05-5425-01 17 10309708 10309708 C A MYH8 Missense_Mutation p.K726N 0.11 deleterious(0.02) benign(0.261) TCGA-05-5425-01 17 10323468 10323468 C T MYH8 Missense_Mutation p.R26Q 0.05 tolerated(0.09) probably_damaging(0.999) TCGA-05-5425-01 17 11659961 11659961 G T DNAH9 Missense_Mutation p.R2272L 0.07 benign(0.142) TCGA-05-5425-01 17 14140027 14140027 T C CDRT15 Missense_Mutation p.I42V 0.12 tolerated_low_confidence(0.12) benign(0.001) TCGA-05-5425-01 17 18141833 18141833 G T LLGL1 Missense_Mutation p.V706L 0.16 deleterious(0) possibly_damaging(0.545) TCGA-05-5425-01 17 19284391 19284391 G T MAPK7 Missense_Mutation p.G290V 0.09 tolerated(0.07) unknown(0) TCGA-05-5425-01 17 28811679 28811679 A G GOSR1 Splice_Site p.X81_splice 0.16 TCGA-05-5425-01 17 32906077 32906078 - G C17orf102 Frame_Shift_Ins p.T75Hfs*64 0.33 TCGA-05-5425-01 17 3301242 3301242 G A OR1E1 Missense_Mutation p.H155Y 0.18 tolerated(0.44) benign(0.02) TCGA-05-5425-01 17 34261816 34261816 C T LYZL6 Missense_Mutation p.G144E 0.19 deleterious(0) probably_damaging(1) TCGA-05-5425-01 17 38345529 38345529 A G RAPGEFL1 Missense_Mutation p.Q133R 0.04 tolerated(0.56) benign(0.116) TCGA-05-5425-01 17 38856534 38856534 C A KRT24 Silent p.A319A 0.11 TCGA-05-5425-01 17 39394429 39394429 C T KRTAP9-8 Silent p.C42C 0.20 TCGA-05-5425-01 17 46148849 46148849 G T CBX1 Missense_Mutation p.T169K 0.15 deleterious(0) probably_damaging(0.945) TCGA-05-5425-01 17 46628343 46628343 G C HOXB3 Missense_Mutation p.R217G 0.09 deleterious(0) probably_damaging(0.922) TCGA-05-5425-01 17 48445530 48445530 C A MRPL27 Missense_Mutation p.A124S 0.44 tolerated(0.14) benign(0.098) TCGA-05-5425-01 17 51901748 51901748 G C KIF2B Missense_Mutation p.E452Q 0.10 deleterious(0) probably_damaging(1) TCGA-05-5425-01 17 51902449 51902449 G T KIF2B 3'UTR 0.25 TCGA-05-5425-01 17 60813518 60813518 A G MARCH10 Missense_Mutation p.S571P 0.04 tolerated(0.09) benign(0.025) TCGA-05-5425-01 17 62291581 62291581 C A TEX2 5'UTR 0.15 TCGA-05-5425-01 17 63206645 63206645 C A RGS9 Missense_Mutation p.S443R 0.18 deleterious(0) probably_damaging(0.996) TCGA-05-5425-01 17 66268785 66268785 G A SLC16A6 Missense_Mutation p.A167V 0.09 deleterious(0) probably_damaging(1) TCGA-05-5425-01 17 70845807 70845807 C A SLC39A11 Silent p.L196L 0.07 TCGA-05-5425-01 17 7330220 7330220 G T C17orf74 Missense_Mutation p.G304C 0.19 deleterious(0) possibly_damaging(0.876) TCGA-05-5425-01 17 74019390 74019390 C A EVPL Missense_Mutation p.V155L 0.29 tolerated(0.25) benign(0.022) TCGA-05-5425-01 17 7579485 7579485 C A TP53 Nonsense_Mutation p.E68* 0.34 TCGA-05-5425-01 17 78272184 78272184 G T RNF213 Silent p.L692L 0.15 TCGA-05-5425-01 17 79873370 79873370 C T SIRT7 Silent p.E142E 0.15 TCGA-05-5425-01 17 9760870 9760870 G T GLP2R Missense_Mutation p.G248W 0.31 deleterious(0) probably_damaging(0.995) TCGA-05-5425-01 17 9801495 9801495 C T RCVRN Missense_Mutation p.E174K 0.17 tolerated(0.16) benign(0.177) TCGA-05-5425-01 17 9885145 9885145 G A GAS7 Missense_Mutation p.H121Y 0.07 deleterious(0.04) benign(0.003) TCGA-05-5425-01 18 18624092 18624092 C A ROCK1 Missense_Mutation p.D216Y 0.57 deleterious(0) probably_damaging(1) TCGA-05-5425-01 18 24604097 24604097 C G CHST9 Missense_Mutation p.R62P 0.33 tolerated_low_confidence(0.18) benign(0) TCGA-05-5425-01 18 29054110 29054110 G T DSG3 Missense_Mutation p.G710C 0.12 deleterious(0) probably_damaging(0.998) TCGA-05-5425-01 18 33694177 33694177 G A SLC39A6 Missense_Mutation p.H576Y 0.19 deleterious(0) probably_damaging(1) TCGA-05-5425-01 18 43705725 43705725 C G HAUS1 Missense_Mutation p.Q252E 0.42 deleterious(0.01) benign(0.297) TCGA-05-5425-01 18 44013278 44013278 G T RNF165 Missense_Mutation p.G63C 0.31 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-05-5425-01 18 44260416 44260416 C A ST8SIA5 Missense_Mutation p.E240D 0.37 possibly_damaging(0.723) TCGA-05-5425-01 18 59483232 59483232 C A RNF152 Missense_Mutation p.Q155H 0.06 tolerated(0.13) benign(0) TCGA-05-5425-01 18 61170715 61170715 C A SERPINB5 Silent p.I296I 0.14 TCGA-05-5425-01 18 61323003 61323003 G T SERPINB3 Nonsense_Mutation p.S354* 0.29 TCGA-05-5425-01 18 63511294 63511294 C T CDH7 Missense_Mutation p.P410S 0.09 tolerated(0.13) benign(0.088) TCGA-05-5425-01 18 8784569 8784569 G T SOGA2 Missense_Mutation p.G487C 0.47 tolerated(0.28) benign(0.005) TCGA-05-5425-01 19 11453485 11453485 C A TMEM205 3'UTR 0.31 TCGA-05-5425-01 19 1221340 1221340 G T STK11 Splice_Site p.X288_splice 0.25 TCGA-05-5425-01 19 15061096 15061096 G T SLC1A6 Missense_Mutation p.L536I 0.34 tolerated(0.31) probably_damaging(0.952) TCGA-05-5425-01 19 16344406 16344406 T A AP1M1 Missense_Mutation p.Y396N 0.38 deleterious(0) probably_damaging(0.995) TCGA-05-5425-01 19 18727909 18727909 G T TMEM59L Missense_Mutation p.V221L 0.44 tolerated(0.46) benign(0.157) TCGA-05-5425-01 19 21216262 21216262 G T ZNF430 Missense_Mutation p.G33W 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-05-5425-01 19 22847720 22847720 G T ZNF492 Nonsense_Mutation p.G417* 0.12 TCGA-05-5425-01 19 30935040 30935040 C A ZNF536 Missense_Mutation p.R191S 0.75 deleterious(0) probably_damaging(0.994) TCGA-05-5425-01 19 31769178 31769178 C A TSHZ3 Missense_Mutation p.L507F 0.64 deleterious(0) probably_damaging(0.999) TCGA-05-5425-01 19 34884931 34884931 A G GPI Missense_Mutation p.Y352C 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-05-5425-01 19 35556239 35556239 G T HPN Silent p.T299T 0.59 TCGA-05-5425-01 19 40331137 40331137 C A FBL Missense_Mutation p.G67V 0.24 tolerated(0.21) unknown(0) TCGA-05-5425-01 19 40478061 40478061 C T PSMC4 Silent p.I15I 0.17 TCGA-05-5425-01 19 40540490 40540490 C A ZNF780B Missense_Mutation p.G759V 0.31 deleterious(0) probably_damaging(0.995) TCGA-05-5425-01 19 41822700 41822700 G A CCDC97 Missense_Mutation p.R153H 0.09 deleterious(0.04) probably_damaging(0.964) TCGA-05-5425-01 19 43421904 43421904 G T PSG6 Missense_Mutation p.T14N 0.12 tolerated(0.12) possibly_damaging(0.48) TCGA-05-5425-01 19 43683247 43683247 C A PSG5 Intron 0.04 TCGA-05-5425-01 19 43688994 43688994 T A PSG5 Missense_Mutation p.I124F 0.58 deleterious(0.01) probably_damaging(0.989) TCGA-05-5425-01 19 44352416 44352416 G T ZNF283 Missense_Mutation p.G555C 0.57 tolerated(0.14) probably_damaging(1) TCGA-05-5425-01 19 44384237 44384237 C - ZNF404 Frame_Shift_Del p.E21Nfs*3 0.36 TCGA-05-5425-01 19 45855483 45855483 G A ERCC2 Missense_Mutation p.A725V 0.24 deleterious(0) probably_damaging(0.968) TCGA-05-5425-01 19 48848507 48848507 C A TMEM143 Missense_Mutation p.E158D 0.20 tolerated(0.08) benign(0.017) TCGA-05-5425-01 19 52034136 52034136 G T SIGLEC6 Missense_Mutation p.P169T 0.11 deleterious(0) probably_damaging(0.98) TCGA-05-5425-01 19 54849216 54849216 G T LILRA4 Missense_Mutation p.L216M 0.09 deleterious(0.01) possibly_damaging(0.5) TCGA-05-5425-01 19 54849819 54849819 G T LILRA4 Nonsense_Mutation p.S68* 0.17 TCGA-05-5425-01 19 54969154 54969154 G T LENG8 Missense_Mutation p.E625D 0.16 deleterious(0) probably_damaging(0.972) TCGA-05-5425-01 19 55253683 55253683 C A KIR2DL3 Missense_Mutation p.Q110K 0.17 tolerated(0.2) possibly_damaging(0.545) TCGA-05-5425-01 19 56435333 56435333 G A NLRP13 Missense_Mutation p.A157V 0.21 tolerated(0.08) benign(0.001) TCGA-05-5425-01 19 58152079 58152079 G T ZNF211 Missense_Mutation p.W140C 0.15 tolerated(0.48) benign(0.01) TCGA-05-5425-01 19 8592263 8592263 C T MYO1F Silent p.K811K 0.18 TCGA-05-5425-01 19 9024902 9024902 C T MUC16 Nonsense_Mutation p.W12320* 0.11 TCGA-05-5425-01 19 9065439 9065439 G A MUC16 Missense_Mutation p.T7336I 0.33 unknown(0) TCGA-05-5425-01 19 9084779 9084779 C G MUC16 Missense_Mutation p.E2346Q 0.39 unknown(0) TCGA-05-5425-01 19 9088216 9088216 G T MUC16 Missense_Mutation p.S1200Y 0.36 unknown(0) TCGA-05-5425-01 19 9237033 9237033 C A OR7G3 Silent p.L198L 0.37 TCGA-05-5425-01 1 101203887 101203887 C G VCAM1 3'UTR 0.09 TCGA-05-5425-01 1 101339551 101339551 T C EXTL2 Missense_Mutation p.I314V 0.16 tolerated_low_confidence(0.08) benign(0.24) TCGA-05-5425-01 1 109439559 109439559 G A GPSM2 Missense_Mutation p.V44M 0.15 deleterious(0) probably_damaging(0.999) TCGA-05-5425-01 1 111216190 111216190 G A KCNA3 Silent p.S414S 0.18 TCGA-05-5425-01 1 111957412 111957412 G A OVGP1 Missense_Mutation p.R571C 0.20 tolerated_low_confidence(0.17) benign(0.185) TCGA-05-5425-01 1 120351347 120351347 C A REG4 Missense_Mutation p.A16S 0.19 tolerated(0.13) unknown(0) TCGA-05-5425-01 1 12387806 12387806 G T VPS13D Missense_Mutation p.A2698S 0.11 benign(0.037) TCGA-05-5425-01 1 147380415 147380415 G A GJA8 Silent p.A111A 0.10 TCGA-05-5425-01 1 152191868 152191868 G C HRNR Nonsense_Mutation p.S746* 0.23 TCGA-05-5425-01 1 152192829 152192829 G T HRNR Missense_Mutation p.H426N 0.12 unknown(0) TCGA-05-5425-01 1 152276932 152276932 C T FLG Missense_Mutation p.R3477H 0.22 unknown(0) TCGA-05-5425-01 1 152281950 152281950 T G FLG Silent p.S1804S 0.05 TCGA-05-5425-01 1 152552192 152552192 C - LCE3D Frame_Shift_Del p.G74Afs*47 0.09 TCGA-05-5425-01 1 152882412 152882434 GTGCCTGTCGAGCTCCCAGTGGA - IVL Frame_Shift_Del p.V47Gfs*18 0.19 TCGA-05-5425-01 1 153520866 153520866 C A S100A3 Silent p.A32A 0.20 TCGA-05-5425-01 1 156131247 156131247 G T SEMA4A Silent p.A307A 0.11 TCGA-05-5425-01 1 156639325 156639325 C T NES Missense_Mutation p.G1552E 0.05 tolerated(0.22) benign(0.037) TCGA-05-5425-01 1 156814510 156814510 G T INSRR Missense_Mutation p.R855S 0.44 tolerated(0.08) possibly_damaging(0.889) TCGA-05-5425-01 1 157567786 157567786 A G FCRL4 5'UTR 0.42 TCGA-05-5425-01 1 158300743 158300743 G T CD1B Silent p.G57G 0.14 TCGA-05-5425-01 1 158325757 158325757 C A CD1E Silent p.R256R 0.28 TCGA-05-5425-01 1 158390370 158390370 C A OR10K2 Missense_Mutation p.G96V 0.27 deleterious(0) probably_damaging(0.959) TCGA-05-5425-01 1 158390586 158390586 T C OR10K2 Missense_Mutation p.Q24R 0.34 tolerated(0.14) probably_damaging(0.995) TCGA-05-5425-01 1 158450540 158450540 C A OR10R2 Missense_Mutation p.D291E 0.11 deleterious(0.01) probably_damaging(0.952) TCGA-05-5425-01 1 158549500 158549500 G T OR10X1 Missense_Mutation p.L64I 0.20 tolerated(1) benign(0.181) TCGA-05-5425-01 1 158576496 158576496 C A OR10Z1 Missense_Mutation p.Q90K 0.07 tolerated(0.71) benign(0.002) TCGA-05-5425-01 1 158607877 158607877 G T SPTA1 Missense_Mutation p.A1712D 0.19 tolerated(0.1) benign(0.002) TCGA-05-5425-01 1 158654908 158654908 G T SPTA1 Missense_Mutation p.T85N 0.23 deleterious(0.01) possibly_damaging(0.493) TCGA-05-5425-01 1 158655041 158655041 G C SPTA1 Missense_Mutation p.R41G 0.30 tolerated(0.5) benign(0.292) TCGA-05-5425-01 1 158687357 158687357 A G OR6K3 Silent p.P183P 0.21 TCGA-05-5425-01 1 158747203 158747204 - A OR6N2 Frame_Shift_Ins p.A75Cfs*6 0.18 TCGA-05-5425-01 1 158914793 158914793 G T PYHIN1 Missense_Mutation p.Q440H 0.07 tolerated(0.13) benign(0.046) TCGA-05-5425-01 1 159036095 159036095 G T AIM2 Missense_Mutation p.Q141K 0.22 tolerated(0.36) benign(0.002) TCGA-05-5425-01 1 159036096 159036096 G T AIM2 Silent p.A140A 0.22 TCGA-05-5425-01 1 160099947 160099947 G T ATP1A2 Missense_Mutation p.G506V 0.40 deleterious(0) probably_damaging(1) TCGA-05-5425-01 1 160326918 160326918 G T NCSTN Missense_Mutation p.A628S 0.21 tolerated(1) benign(0.001) TCGA-05-5425-01 1 162492234 162492234 C T UHMK1 Missense_Mutation p.A385V 0.26 deleterious(0) probably_damaging(0.999) TCGA-05-5425-01 1 165324756 165324756 G T LMX1A Missense_Mutation p.A14E 0.11 tolerated_low_confidence(0.09) benign(0.097) TCGA-05-5425-01 1 176153825 176153825 G A RFWD2 Silent p.P137P 0.14 TCGA-05-5425-01 1 182555440 182555440 C A RNASEL Missense_Mutation p.G168W 0.28 deleterious(0) probably_damaging(1) TCGA-05-5425-01 1 183247712 183247712 G A NMNAT2 Silent p.I209I 0.17 TCGA-05-5425-01 1 190203594 190203594 C A BRINP3 Missense_Mutation p.R211L 0.33 deleterious(0.03) possibly_damaging(0.683) TCGA-05-5425-01 1 196648885 196648885 G C CFH Missense_Mutation p.C251S 0.50 deleterious(0) probably_damaging(0.993) TCGA-05-5425-01 1 197403855 197403855 T G CRB1 Missense_Mutation p.F954L 0.04 tolerated(0.07) benign(0.024) TCGA-05-5425-01 1 197404648 197404648 C A CRB1 Missense_Mutation p.Q1219K 0.28 tolerated(0.46) benign(0.002) TCGA-05-5425-01 1 201330434 201330434 C A TNNT2 Missense_Mutation p.Q251H 0.13 tolerated(0.55) possibly_damaging(0.822) TCGA-05-5425-01 1 203191396 203191396 G T CHIT1 Silent p.V221V 0.14 TCGA-05-5425-01 1 203819698 203819698 A G ZC3H11A Silent p.K665K 0.15 TCGA-05-5425-01 1 206821364 206821364 T C DYRK3 Missense_Mutation p.M274T 0.13 deleterious(0) benign(0.123) TCGA-05-5425-01 1 207679247 207679247 A T CR1 Splice_Site p.X41_splice 0.33 TCGA-05-5425-01 1 215256619 215256619 C A KCNK2 5'UTR 0.08 TCGA-05-5425-01 1 215848654 215848654 C G USH2A Missense_Mutation p.W4200S 0.35 benign(0.006) TCGA-05-5425-01 1 218610705 218610705 G A TGFB2 Missense_Mutation p.C346Y 0.13 deleterious(0) probably_damaging(1) TCGA-05-5425-01 1 226075248 226075248 C A RP4-559A3.7 Missense_Mutation p.A305S 0.21 unknown(0) TCGA-05-5425-01 1 227152832 227152832 G A ADCK3 Silent p.A103A 0.14 TCGA-05-5425-01 1 227171546 227171546 G A ADCK3 Missense_Mutation p.R416H 0.18 deleterious(0.01) possibly_damaging(0.697) TCGA-05-5425-01 1 229567510 229567510 C G ACTA1 Missense_Mutation p.Q316H 0.05 tolerated_low_confidence(0.07) possibly_damaging(0.881) TCGA-05-5425-01 1 229568535 229568535 C T ACTA1 Silent p.E74E 0.05 TCGA-05-5425-01 1 231829612 231829612 G A DISC1 Silent p.R36R 0.11 TCGA-05-5425-01 1 233497909 233497909 G T MLK4 Silent p.V474V 0.44 TCGA-05-5425-01 1 235301475 235301475 G C RBM34 Missense_Mutation p.P239R 0.09 deleterious(0) probably_damaging(0.993) TCGA-05-5425-01 1 235894397 235894397 C A LYST Missense_Mutation p.R2961L 0.44 deleterious(0) probably_damaging(0.991) TCGA-05-5425-01 1 236889314 236889314 A G ACTN2 Missense_Mutation p.H177R 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-05-5425-01 1 236988699 236988699 G T MTR Missense_Mutation p.K309N 0.11 tolerated(0.12) possibly_damaging(0.694) TCGA-05-5425-01 1 237948092 237948092 C A RYR2 Silent p.S4360S 0.18 TCGA-05-5425-01 1 243329225 243329225 C A CEP170 Missense_Mutation p.E679D 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-05-5425-01 1 248128787 248128787 G T OR2AK2 Missense_Mutation p.V52F 0.36 deleterious(0) possibly_damaging(0.852) TCGA-05-5425-01 1 248223986 248223986 G T OR2L3 Translation_Start_Site p.M1? 0.36 deleterious(0) benign(0.12) TCGA-05-5425-01 1 248436634 248436634 G T OR2T33 Silent p.T161T 0.32 TCGA-05-5425-01 1 248551394 248551394 T C OR2T6 Missense_Mutation p.I162T 0.22 tolerated(0.06) possibly_damaging(0.515) TCGA-05-5425-01 1 248789739 248789740 - A OR2T11 Frame_Shift_Ins p.R231Sfs*16 0.31 TCGA-05-5425-01 1 26360245 26360245 C T EXTL1 Missense_Mutation p.T526M 0.22 tolerated(0.06) probably_damaging(0.99) TCGA-05-5425-01 1 28858388 28858388 G T RCC1 Silent p.G80G 0.42 TCGA-05-5425-01 1 32712982 32712982 C T FAM167B 5'UTR 0.26 TCGA-05-5425-01 1 3564093 3564093 C A WRAP73 Missense_Mutation p.R34L 0.17 deleterious(0) possibly_damaging(0.741) TCGA-05-5425-01 1 3599737 3599737 C G TP73 Missense_Mutation p.S60C 0.14 deleterious(0.02) possibly_damaging(0.566) TCGA-05-5425-01 1 37337920 37337920 G A GRIK3 Missense_Mutation p.R201C 0.28 deleterious(0) possibly_damaging(0.866) TCGA-05-5425-01 1 38455751 38455751 G A SF3A3 5'UTR 0.14 TCGA-05-5425-01 1 53074153 53074153 A C GPX7 3'UTR 0.35 TCGA-05-5425-01 1 53480680 53480680 A C SCP2 Silent p.V400V 0.14 TCGA-05-5425-01 1 6194275 6194275 C A CHD5 Silent p.L1019L 0.33 TCGA-05-5425-01 1 75038046 75038046 T A C1orf173 Missense_Mutation p.K1116N 0.16 tolerated(0.25) benign(0.007) TCGA-05-5425-01 1 76384715 76384715 G T ASB17 Silent p.T270T 0.19 TCGA-05-5425-01 1 76384716 76384716 G T ASB17 Missense_Mutation p.T270N 0.20 deleterious(0.02) benign(0.009) TCGA-05-5425-01 1 78193990 78193990 G A USP33 Silent p.S406S 0.19 TCGA-05-5425-01 1 82452992 82452992 G T LPHN2 Intron 0.17 TCGA-05-5425-01 1 86891068 86891068 G T CLCA2 Missense_Mutation p.R78I 0.23 deleterious(0) probably_damaging(0.963) TCGA-05-5425-01 1 89650993 89650993 G T GBP4 Missense_Mutation p.P623T 0.43 deleterious(0.02) benign(0.013) TCGA-05-5425-01 1 89848331 89848331 A G GBP6 Missense_Mutation p.I421V 0.20 tolerated(0.67) benign(0.252) TCGA-05-5425-01 1 99225619 99225619 A G SNX7 Missense_Mutation p.T430A 0.09 tolerated(1) benign(0.007) TCGA-05-5425-01 1 99358627 99358627 A T LPPR5 3'UTR 0.38 TCGA-05-5425-01 20 10653548 10653559 TCTCCCGGGTTC GCT JAG1 In_Frame_Del p.N60_D63delinsA 0.09 TCGA-05-5425-01 20 23476503 23476503 C T CST8 Silent p.P127P 0.18 TCGA-05-5425-01 20 23731387 23731387 G T CST1 Silent p.L39L 0.33 TCGA-05-5425-01 20 2411674 2411674 G T TGM6 Splice_Site p.X656_splice 0.45 TCGA-05-5425-01 20 2575512 2575512 C A TMC2 Missense_Mutation p.N325K 0.14 deleterious(0.02) probably_damaging(0.96) TCGA-05-5425-01 20 30037939 30037939 C - DEFB123 Frame_Shift_Del p.K57Sfs*17 0.31 TCGA-05-5425-01 20 31390197 31390197 C T DNMT3B Missense_Mutation p.P718S 0.18 deleterious(0) probably_damaging(0.999) TCGA-05-5425-01 20 3214740 3214740 A G SLC4A11 Missense_Mutation p.M214T 0.20 tolerated(0.5) benign(0.004) TCGA-05-5425-01 20 3214910 3214910 T G SLC4A11 Silent p.L157L 0.13 TCGA-05-5425-01 20 33608995 33608995 G A TRPC4AP Nonsense_Mutation p.Q406* 0.23 TCGA-05-5425-01 20 33874320 33874320 C T FAM83C 3'UTR 0.49 TCGA-05-5425-01 20 35509141 35509141 C A TLDC2 Silent p.S142S 0.19 TCGA-05-5425-01 20 35509142 35509142 C A TLDC2 Missense_Mutation p.P143T 0.18 deleterious(0) probably_damaging(1) TCGA-05-5425-01 20 36869726 36869726 C T KIAA1755 Silent p.Q269Q 0.31 TCGA-05-5425-01 20 37546983 37546983 C T PPP1R16B Missense_Mutation p.P460S 0.29 tolerated(0.56) possibly_damaging(0.859) TCGA-05-5425-01 20 40709396 40709396 C A PTPRT 3'UTR 0.33 TCGA-05-5425-01 20 44665907 44665907 C A SLC12A5 Nonsense_Mutation p.Y188* 0.32 TCGA-05-5425-01 20 55027543 55027543 G T CASS4 Silent p.L437L 0.10 TCGA-05-5425-01 20 56137929 56137929 C A PCK1 Missense_Mutation p.S195Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-05-5425-01 20 57415902 57415902 G T RP4-806M20.3 5'Flank 0.08 TCGA-05-5425-01 20 9520259 9520259 A C PAK7 Silent p.S670S 0.05 TCGA-05-5425-01 21 10933933 10933933 C A TPTE Missense_Mutation p.V316L 0.11 tolerated(1) benign(0.023) TCGA-05-5425-01 21 10933934 10933934 C T TPTE Missense_Mutation p.M315I 0.11 tolerated(0.06) possibly_damaging(0.679) TCGA-05-5425-01 21 11026813 11026813 C A BAGE2 RNA 0.21 TCGA-05-5425-01 21 31692093 31692093 G T KRTAP26-1 Nonsense_Mutation p.Y87* 0.34 TCGA-05-5425-01 21 38536435 38536435 G T TTC3 Missense_Mutation p.D1085Y 0.06 deleterious(0.02) possibly_damaging(0.547) TCGA-05-5425-01 21 39817490 39817490 T A ERG Missense_Mutation p.T32S 0.27 tolerated(0.37) benign(0) TCGA-05-5425-01 21 47410685 47410685 A T COL6A1 Splice_Site p.X335_splice 0.33 TCGA-05-5425-01 22 16287396 16287396 C A POTEH Missense_Mutation p.A164S 0.10 deleterious(0.03) probably_damaging(0.964) TCGA-05-5425-01 22 22599636 22599636 G T VPREB1 Missense_Mutation p.D109Y 0.31 deleterious(0) probably_damaging(1) TCGA-05-5425-01 22 32586793 32586793 G T RFPL2 Missense_Mutation p.T368N 0.35 tolerated(0.21) possibly_damaging(0.63) TCGA-05-5425-01 22 36708174 36708174 G A MYH9 Nonsense_Mutation p.Q550* 0.10 TCGA-05-5425-01 22 44332968 44332968 C T PNPLA3 Silent p.S265S 0.27 TCGA-05-5425-01 2 101012006 101012006 C T CHST10 Silent p.R166R 0.23 TCGA-05-5425-01 2 105859262 105859262 A T GPR45 Missense_Mutation p.K316M 0.11 deleterious(0) probably_damaging(0.976) TCGA-05-5425-01 2 108487634 108487634 A C RGPD4 Missense_Mutation p.K1058N 0.03 deleterious(0.01) probably_damaging(0.94) TCGA-05-5425-01 2 112740486 112740486 A T MERTK Missense_Mutation p.R404S 0.09 tolerated(0.14) benign(0.004) TCGA-05-5425-01 2 114256780 114256780 C T FOXD4L1 5'UTR 0.12 TCGA-05-5425-01 2 11798797 11798797 G C NTSR2 Missense_Mutation p.F347L 0.32 deleterious(0.03) probably_damaging(0.997) TCGA-05-5425-01 2 125504849 125504849 G T CNTNAP5 Missense_Mutation p.R706S 0.14 tolerated(0.39) benign(0.04) TCGA-05-5425-01 2 125521593 125521593 C G CNTNAP5 Missense_Mutation p.S800C 0.16 deleterious(0) probably_damaging(0.933) TCGA-05-5425-01 2 125521627 125521627 C G CNTNAP5 Missense_Mutation p.F811L 0.11 tolerated(1) benign(0.011) TCGA-05-5425-01 2 125521645 125521645 C G CNTNAP5 Missense_Mutation p.F817L 0.14 tolerated(0.06) benign(0.02) TCGA-05-5425-01 2 125521699 125521699 A T CNTNAP5 Missense_Mutation p.K835N 0.20 deleterious(0.02) possibly_damaging(0.9) TCGA-05-5425-01 2 132290238 132290238 G T CCDC74A Missense_Mutation p.A254S 0.14 tolerated(0.18) benign(0.033) TCGA-05-5425-01 2 133175302 133175302 G T GPR39 Silent p.V229V 0.20 TCGA-05-5425-01 2 141819697 141819697 C T LRP1B Missense_Mutation p.V387I 0.16 benign(0.299) TCGA-05-5425-01 2 1426887 1426887 C A TPO Nonsense_Mutation p.Y55* 0.20 TCGA-05-5425-01 2 154800932 154800932 G C GALNT13 5'UTR 0.11 TCGA-05-5425-01 2 167151151 167151151 C G SCN9A Missense_Mutation p.G308A 0.45 deleterious(0) probably_damaging(0.948) TCGA-05-5425-01 2 168099781 168099781 G A XIRP2 Missense_Mutation p.D627N 0.29 probably_damaging(0.974) TCGA-05-5425-01 2 168100426 168100426 T C XIRP2 Missense_Mutation p.C842R 0.08 probably_damaging(1) TCGA-05-5425-01 2 170428515 170428515 C A FASTKD1 Nonsense_Mutation p.E9* 0.09 TCGA-05-5425-01 2 179397931 179397931 G A TTN Nonsense_Mutation p.R34471* 0.05 TCGA-05-5425-01 2 179454471 179454471 G A TTN Silent p.L20661L 0.06 TCGA-05-5425-01 2 179484999 179484999 C T TTN Missense_Mutation p.E15417K 0.06 TCGA-05-5425-01 2 179648807 179648807 C A TTN Missense_Mutation p.R922L 0.11 TCGA-05-5425-01 2 179718292 179718292 T C CCDC141 Silent p.T1040T 0.09 TCGA-05-5425-01 2 182360581 182360581 G C ITGA4 Missense_Mutation p.C486S 0.10 deleterious(0) probably_damaging(1) TCGA-05-5425-01 2 182850885 182850885 C A PPP1R1C Missense_Mutation p.F16L 0.10 tolerated(1) benign(0.005) TCGA-05-5425-01 2 187703837 187703837 G A ZSWIM2 Nonsense_Mutation p.R115* 0.05 TCGA-05-5425-01 2 196753131 196753131 C A DNAH7 Nonsense_Mutation p.E1753* 0.10 TCGA-05-5425-01 2 207429762 207429762 C A ADAM23 Missense_Mutation p.S455Y 0.08 deleterious(0.02) benign(0.023) TCGA-05-5425-01 2 210543380 210543380 A G MAP2 Missense_Mutation p.H116R 0.13 deleterious_low_confidence(0.04) benign(0.002) TCGA-05-5425-01 2 211455616 211455616 G A CPS1 Missense_Mutation p.M317I 0.12 deleterious(0) benign(0.068) TCGA-05-5425-01 2 215884140 215884140 A T ABCA12 Nonsense_Mutation p.L526* 0.07 TCGA-05-5425-01 2 219423437 219423437 G T USP37 Intron 0.24 TCGA-05-5425-01 2 220346034 220346034 G C SPEG Missense_Mutation p.G1793A 0.14 probably_damaging(1) TCGA-05-5425-01 2 228681090 228681090 C G CCL20 Missense_Mutation p.R87G 0.06 tolerated(0.15) benign(0.339) TCGA-05-5425-01 2 230723713 230723713 T C TRIP12 Missense_Mutation p.K226E 0.09 tolerated_low_confidence(0.21) probably_damaging(0.952) TCGA-05-5425-01 2 232390093 232390093 G T NMUR1 Missense_Mutation p.H314Q 0.12 deleterious(0) probably_damaging(1) TCGA-05-5425-01 2 233344908 233344908 G T ECEL1 Silent p.P761P 0.29 TCGA-05-5425-01 2 235951092 235951092 G T SH3BP4 Missense_Mutation p.R560L 0.30 deleterious(0) possibly_damaging(0.895) TCGA-05-5425-01 2 238419635 238419635 C A MLPH Silent p.V112V 0.18 TCGA-05-5425-01 2 24255711 24255711 C A C2orf44 Nonsense_Mutation p.E642* 0.15 TCGA-05-5425-01 2 27669194 27669194 G C IFT172 Nonsense_Mutation p.S1563* 0.06 TCGA-05-5425-01 2 29295578 29295578 G C C2orf71 Nonsense_Mutation p.S517* 0.12 TCGA-05-5425-01 2 37028518 37028518 T A VIT Missense_Mutation p.I378N 0.11 deleterious(0) possibly_damaging(0.888) TCGA-05-5425-01 2 37028519 37028519 T A VIT Silent p.I378I 0.11 TCGA-05-5425-01 2 43969890 43969890 G T PLEKHH2 Nonsense_Mutation p.G1078* 0.17 TCGA-05-5425-01 2 44502977 44502977 C A SLC3A1 Silent p.I101I 0.24 TCGA-05-5425-01 2 48809304 48809304 G A STON1-GTF2A1L Missense_Mutation p.R511Q 0.06 deleterious(0.01) possibly_damaging(0.63) TCGA-05-5425-01 2 48872253 48872253 T C STON1-GTF2A1L Missense_Mutation p.S833P 0.12 deleterious(0.05) probably_damaging(0.998) TCGA-05-5425-01 2 50765556 50765556 C A NRXN1 Missense_Mutation p.A700S 0.22 deleterious(0.01) probably_damaging(0.942) TCGA-05-5425-01 2 50765686 50765686 C T NRXN1 Silent p.G656G 0.08 TCGA-05-5425-01 2 51255041 51255041 C A NRXN1 Missense_Mutation p.R124L 0.27 tolerated(0.51) benign(0.364) TCGA-05-5425-01 2 61720116 61720116 C T XPO1 Missense_Mutation p.V440I 0.10 tolerated(1) benign(0.162) TCGA-05-5425-01 2 61720117 61720117 T A XPO1 Missense_Mutation p.E439D 0.10 tolerated(0.06) benign(0.089) TCGA-05-5425-01 2 71036357 71036357 G T CLEC4F 3'UTR 0.36 TCGA-05-5425-01 2 71043523 71043523 T A CLEC4F Missense_Mutation p.E330D 0.23 tolerated(0.16) benign(0.016) TCGA-05-5425-01 2 71780983 71780983 G T DYSF Silent p.V677V 0.19 TCGA-05-5425-01 2 79878745 79878745 G C CTNNA2 Silent p.T21T 0.20 TCGA-05-5425-01 2 89247278 89247278 G T IGKV1-5 Missense_Mutation p.P6H 0.23 tolerated(0.07) benign(0.292) TCGA-05-5425-01 2 89513335 89513335 C A IGKV1-27 Missense_Mutation p.W16C 0.22 tolerated(0.09) benign(0.109) TCGA-05-5425-01 2 9098626 9098626 C A MBOAT2 Missense_Mutation p.W74L 0.14 deleterious(0) probably_damaging(0.99) TCGA-05-5425-01 2 95847560 95847560 G T ZNF2 Silent p.L329L 0.19 TCGA-05-5425-01 3 101390880 101390880 G A ZBTB11 Missense_Mutation p.P163L 0.08 tolerated_low_confidence(0.23) benign(0.001) TCGA-05-5425-01 3 101477085 101477085 T C CEP97 Silent p.S545S 0.32 TCGA-05-5425-01 3 111603084 111603084 G T PHLDB2 Missense_Mutation p.D54Y 0.16 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-05-5425-01 3 111672842 111672842 G T PHLDB2 Missense_Mutation p.M946I 0.29 tolerated(0.42) benign(0.001) TCGA-05-5425-01 3 111672843 111672843 G T PHLDB2 Missense_Mutation p.A947S 0.30 tolerated(0.81) benign(0.001) TCGA-05-5425-01 3 113850048 113850048 G A DRD3 Missense_Mutation p.T308I 0.14 deleterious(0.05) probably_damaging(0.98) TCGA-05-5425-01 3 118866368 118866368 C A C3orf30 Silent p.P444P 0.08 TCGA-05-5425-01 3 119306668 119306668 G A ADPRH Silent p.E339E 0.32 TCGA-05-5425-01 3 123019029 123019029 G T ADCY5 Silent p.I946I 0.14 TCGA-05-5425-01 3 123633773 123633773 A C CCDC14 Silent p.T864T 0.14 TCGA-05-5425-01 3 124211594 124211594 A G KALRN Missense_Mutation p.N1564S 0.14 tolerated(1) benign(0.002) TCGA-05-5425-01 3 127379946 127379946 C A PODXL2 Missense_Mutation p.L359I 0.25 tolerated(0.31) benign(0.147) TCGA-05-5425-01 3 133368224 133368224 T G TOPBP1 Intron 0.12 TCGA-05-5425-01 3 1367631 1367631 C T CNTN6 Missense_Mutation p.P360L 0.15 tolerated(0.57) benign(0.012) TCGA-05-5425-01 3 138188971 138188971 G T ESYT3 Nonsense_Mutation p.E525* 0.14 TCGA-05-5425-01 3 140785432 140785432 G T SPSB4 Silent p.P162P 0.38 TCGA-05-5425-01 3 148601591 148601591 C T CPA3 Missense_Mutation p.H324Y 0.17 tolerated(0.38) benign(0.009) TCGA-05-5425-01 3 14861776 14861776 C G FGD5 Missense_Mutation p.L400V 0.17 tolerated_low_confidence(0.31) benign(0) TCGA-05-5425-01 3 151164986 151164986 A T IGSF10 Missense_Mutation p.I928N 0.03 tolerated(0.07) benign(0.08) TCGA-05-5425-01 3 160474394 160474394 G T PPM1L Missense_Mutation p.G100C 0.23 deleterious(0) probably_damaging(1) TCGA-05-5425-01 3 164714404 164714404 T C SI Silent p.S1537S 0.10 TCGA-05-5425-01 3 167086304 167086304 C A ZBBX Nonsense_Mutation p.E43* 0.25 TCGA-05-5425-01 3 169644533 169644533 G - SAMD7 Frame_Shift_Del p.G162Efs*5 0.23 TCGA-05-5425-01 3 171330158 171330158 C G PLD1 Silent p.V931V 0.16 TCGA-05-5425-01 3 171377053 171377053 C A PLD1 Silent p.V793V 0.17 TCGA-05-5425-01 3 179605466 179605466 G T PEX5L Missense_Mutation p.T102K 0.21 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-05-5425-01 3 183217606 183217606 C A KLHL6 Nonsense_Mutation p.E307* 0.44 TCGA-05-5425-01 3 184009934 184009934 G T ECE2 Missense_Mutation p.G854C 0.09 deleterious(0) probably_damaging(1) TCGA-05-5425-01 3 184009935 184009935 G T ECE2 Missense_Mutation p.G854V 0.09 deleterious(0) probably_damaging(1) TCGA-05-5425-01 3 188406576 188406576 G T LPP Intron 0.20 TCGA-05-5425-01 3 25781255 25781255 C A NGLY1 Nonsense_Mutation p.E232* 0.12 TCGA-05-5425-01 3 36875088 36875094 CGGCCCC - TRANK1 Frame_Shift_Del p.G1950Pfs*11 0.31 TCGA-05-5425-01 3 37365626 37365626 C T GOLGA4 Missense_Mutation p.T772I 0.37 benign(0.099) TCGA-05-5425-01 3 48621050 48621050 T A COL7A1 Splice_Site p.X1448_splice 0.10 TCGA-05-5425-01 3 48688359 48688359 A T CELSR3 Missense_Mutation p.S2112R 0.23 deleterious(0) possibly_damaging(0.875) TCGA-05-5425-01 3 49212227 49212227 G C KLHDC8B Missense_Mutation p.E198D 0.27 tolerated(0.05) probably_damaging(0.994) TCGA-05-5425-01 3 49691858 49691858 A T BSN Silent p.A1623A 0.36 TCGA-05-5425-01 3 50153390 50153390 G C RBM5 Missense_Mutation p.A691P 0.16 tolerated(0.19) probably_damaging(0.927) TCGA-05-5425-01 3 5025131 5025131 A T BHLHE40 Silent p.S331S 0.19 TCGA-05-5425-01 3 51431139 51431139 G C RBM15B Missense_Mutation p.R770P 0.12 deleterious(0.02) benign(0.187) TCGA-05-5425-01 3 66023765 66023765 C A MAGI1 Silent p.V73V 0.23 TCGA-05-5425-01 3 72799761 72799761 C G SHQ1 Missense_Mutation p.D470H 0.24 tolerated_low_confidence(0.13) benign(0.144) TCGA-05-5425-01 3 73432630 73432630 C A PDZRN3 Missense_Mutation p.R1029S 0.06 deleterious(0) probably_damaging(0.999) TCGA-05-5425-01 3 73432631 73432631 C G PDZRN3 Missense_Mutation p.R1029T 0.07 deleterious(0) probably_damaging(0.999) TCGA-05-5425-01 3 96706829 96706829 C A EPHA6 Missense_Mutation p.S369Y 0.19 tolerated(0.18) benign(0.004) TCGA-05-5425-01 3 97329697 97329697 G T EPHA6 Missense_Mutation p.R858L 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-05-5425-01 3 97888035 97888035 C G OR5H15 Missense_Mutation p.F164L 0.04 tolerated(0.29) benign(0.042) TCGA-05-5425-01 4 100239212 100239212 C A ADH1B Missense_Mutation p.V84F 0.20 tolerated(0.33) benign(0.097) TCGA-05-5425-01 4 100349720 100349720 G T ADH7 Missense_Mutation p.P83Q 0.20 deleterious(0) probably_damaging(0.936) TCGA-05-5425-01 4 108991841 108991841 C A LEF1 Missense_Mutation p.G365V 0.27 deleterious(0) probably_damaging(1) TCGA-05-5425-01 4 115997901 115997901 T C NDST4 Missense_Mutation p.I98V 0.12 tolerated(0.05) possibly_damaging(0.833) TCGA-05-5425-01 4 120419774 120419774 G T PDE5A Silent p.G870G 0.22 TCGA-05-5425-01 4 129809853 129809853 G A SCLT1 Missense_Mutation p.A662V 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-05-5425-01 4 146807039 146807039 C A ZNF827 Missense_Mutation p.G513V 0.17 tolerated(0.36) benign(0.019) TCGA-05-5425-01 4 151505111 151505111 C A MAB21L2 Nonsense_Mutation p.C310* 0.16 TCGA-05-5425-01 4 154249741 154249741 G A TRIM2 Silent p.G694G 0.16 TCGA-05-5425-01 4 155156668 155156668 C T DCHS2 Missense_Mutation p.A2591T 0.17 tolerated(0.34) benign(0.003) TCGA-05-5425-01 4 175564770 175564770 C G GLRA3 3'UTR 0.31 TCGA-05-5425-01 4 177095826 177095826 A G WDR17 Missense_Mutation p.R1175G 0.10 deleterious(0) benign(0.184) TCGA-05-5425-01 4 186544296 186544296 G A SORBS2 Missense_Mutation p.R859C 0.13 deleterious(0) probably_damaging(0.999) TCGA-05-5425-01 4 188924555 188924555 G T ZFP42 Missense_Mutation p.K198N 0.14 tolerated(0.24) benign(0.211) TCGA-05-5425-01 4 38776878 38776878 T A TLR10 Missense_Mutation p.T112S 0.20 tolerated(1) benign(0.006) TCGA-05-5425-01 4 39839704 39839704 C A PDS5A Missense_Mutation p.G1261V 0.29 tolerated_low_confidence(0.31) benign(0.109) TCGA-05-5425-01 4 46060519 46060519 A G GABRG1 Missense_Mutation p.I249T 0.13 tolerated(0.67) benign(0.173) TCGA-05-5425-01 4 46930369 46930369 G T GABRA4 Missense_Mutation p.S513Y 0.15 deleterious_low_confidence(0.01) probably_damaging(0.968) TCGA-05-5425-01 4 47663870 47663870 T A CORIN Silent p.A531A 0.26 TCGA-05-5425-01 4 57856922 57856922 T G POLR2B Missense_Mutation p.F34C 0.06 deleterious(0) probably_damaging(0.999) TCGA-05-5425-01 4 62812713 62812713 C T LPHN3 Missense_Mutation p.T766M 0.09 tolerated(0.14) possibly_damaging(0.671) TCGA-05-5425-01 4 66356306 66356306 C G EPHA5 Missense_Mutation p.K397N 0.22 deleterious(0.03) possibly_damaging(0.516) TCGA-05-5425-01 4 66509116 66509116 C T EPHA5 Missense_Mutation p.G71R 0.16 deleterious(0) probably_damaging(1) TCGA-05-5425-01 4 69179973 69179973 A T YTHDC1 Missense_Mutation p.S676R 0.17 tolerated_low_confidence(0.54) unknown(0) TCGA-05-5425-01 4 70079862 70079862 G T UGT2B11 Nonsense_Mutation p.Y193* 0.26 TCGA-05-5425-01 4 70723311 70723311 G T SULT1E1 Missense_Mutation p.L18I 0.24 tolerated(0.31) benign(0.043) TCGA-05-5425-01 4 71346709 71346709 A G MUC7 Missense_Mutation p.K83R 0.08 tolerated(0.54) possibly_damaging(0.801) TCGA-05-5425-01 4 71840984 71840984 G T MOB1B Silent p.T135T 0.12 TCGA-05-5425-01 4 73013266 73013266 G A NPFFR2 Missense_Mutation p.G436S 0.23 deleterious(0.04) probably_damaging(1) TCGA-05-5425-01 4 76523301 76523301 T C CDKL2 Missense_Mutation p.D327G 0.11 tolerated(0.08) benign(0.002) TCGA-05-5425-01 4 89608371 89608371 T A HERC3 Missense_Mutation p.C860S 0.12 tolerated(0.37) benign(0.438) TCGA-05-5425-01 4 94751134 94751134 G A ATOH1 Missense_Mutation p.A353T 0.19 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-05-5425-01 5 127466874 127466874 A T SLC12A2 Silent p.A388A 0.20 TCGA-05-5425-01 5 127645078 127645078 G T FBN2 Missense_Mutation p.S1738R 0.32 deleterious(0.04) probably_damaging(0.944) TCGA-05-5425-01 5 134077087 134077087 G T CAMLG Silent p.L169L 0.31 TCGA-05-5425-01 5 139201498 139201498 C A PSD2 Missense_Mutation p.P373Q 0.46 deleterious(0.01) probably_damaging(0.953) TCGA-05-5425-01 5 140209440 140209440 C A PCDHA6 Silent p.G588G 0.27 TCGA-05-5425-01 5 140221019 140221019 A T PCDHA8 Missense_Mutation p.E38V 0.36 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-05-5425-01 5 140307607 140307607 G T PCDHAC1 Missense_Mutation p.C377F 0.12 deleterious(0.01) probably_damaging(0.973) TCGA-05-5425-01 5 140768680 140768680 G T PCDHGB4 Missense_Mutation p.R410L 0.12 deleterious(0) probably_damaging(0.998) TCGA-05-5425-01 5 140784118 140784118 G A PCDHGA9 Silent p.T533T 0.51 TCGA-05-5425-01 5 140869287 140869287 G A PCDHGC5 Silent p.P160P 0.08 TCGA-05-5425-01 5 148406797 148406797 G T SH3TC2 Missense_Mutation p.T833N 0.38 deleterious(0.05) possibly_damaging(0.756) TCGA-05-5425-01 5 148407947 148407947 G A SH3TC2 Missense_Mutation p.P450S 0.43 deleterious(0) probably_damaging(1) TCGA-05-5425-01 5 148422262 148422262 T A SH3TC2 Missense_Mutation p.Q175L 0.42 deleterious(0) benign(0.213) TCGA-05-5425-01 5 150911281 150911281 C G FAT2 Missense_Mutation p.Q3226H 0.08 possibly_damaging(0.722) TCGA-05-5425-01 5 153413357 153413357 C T FAM114A2 Missense_Mutation p.V133I 0.49 tolerated(0.07) benign(0.043) TCGA-05-5425-01 5 161112988 161112988 A G GABRA6 5'UTR 0.22 TCGA-05-5425-01 5 16565890 16565890 C A FAM134B Missense_Mutation p.W147L 0.36 tolerated(0.06) possibly_damaging(0.846) TCGA-05-5425-01 5 172659600 172659600 G T NKX2-5 Missense_Mutation p.S316Y 0.13 deleterious(0) possibly_damaging(0.831) TCGA-05-5425-01 5 179397486 179397486 C A RNF130 Missense_Mutation p.C290F 0.18 deleterious(0) possibly_damaging(0.852) TCGA-05-5425-01 5 179538539 179538539 G C RASGEF1C Silent p.T407T 0.07 TCGA-05-5425-01 5 21752203 21752203 C A CDH12 Silent p.G676G 0.14 TCGA-05-5425-01 5 21752206 21752206 G C CDH12 Missense_Mutation p.I675M 0.14 tolerated(0.34) possibly_damaging(0.859) TCGA-05-5425-01 5 24488151 24488151 C A CDH10 Missense_Mutation p.G663V 0.12 deleterious(0) probably_damaging(0.999) TCGA-05-5425-01 5 31294306 31294306 G T CDH6 Nonsense_Mutation p.E156* 0.08 TCGA-05-5425-01 5 33576789 33576789 G T ADAMTS12 Silent p.T1114T 0.20 TCGA-05-5425-01 5 33637846 33637846 T G ADAMTS12 Missense_Mutation p.K575T 0.06 deleterious(0) possibly_damaging(0.906) TCGA-05-5425-01 5 33881337 33881337 G A ADAMTS12 Missense_Mutation p.L126F 0.46 tolerated(0.14) possibly_damaging(0.869) TCGA-05-5425-01 5 36671316 36671316 G A SLC1A3 Missense_Mutation p.A169T 0.32 tolerated(0.06) probably_damaging(1) TCGA-05-5425-01 5 38968050 38968050 C A RICTOR Missense_Mutation p.S352I 0.05 deleterious(0) possibly_damaging(0.879) TCGA-05-5425-01 5 40852903 40852903 A T CARD6 Missense_Mutation p.D490V 0.30 deleterious(0) possibly_damaging(0.836) TCGA-05-5425-01 5 41012739 41012739 A T MROH2B Nonsense_Mutation p.C1027* 0.04 TCGA-05-5425-01 5 41064640 41064640 G T MROH2B Missense_Mutation p.L132M 0.17 deleterious(0) probably_damaging(0.984) TCGA-05-5425-01 5 52779975 52779975 C T FST Silent p.T191T 0.06 TCGA-05-5425-01 5 5447972 5447972 C A KIAA0947 Missense_Mutation p.T189K 0.44 deleterious(0) probably_damaging(0.999) TCGA-05-5425-01 5 64084801 64084801 G T CWC27 Missense_Mutation p.G208V 0.21 deleterious(0) probably_damaging(0.954) TCGA-05-5425-01 5 6600335 6600335 C A NSUN2 Missense_Mutation p.A670S 0.23 tolerated(0.76) benign(0.003) TCGA-05-5425-01 5 75998366 75998366 G C IQGAP2 Missense_Mutation p.R1522T 0.09 deleterious(0.04) benign(0.004) TCGA-05-5425-01 6 100056667 100056667 G T PRDM13 Silent p.L65L 0.19 TCGA-05-5425-01 6 100390939 100390939 C A MCHR2 Missense_Mutation p.W158L 0.06 deleterious(0) probably_damaging(0.999) TCGA-05-5425-01 6 130762738 130762738 C A TMEM200A Missense_Mutation p.L391I 0.27 deleterious(0.02) probably_damaging(0.991) TCGA-05-5425-01 6 131914180 131914180 C A MED23 Missense_Mutation p.V1122F 0.15 deleterious(0) probably_damaging(0.992) TCGA-05-5425-01 6 136599731 136599731 G T BCLAF1 Silent p.V96V 0.09 TCGA-05-5425-01 6 155569292 155569292 G C TIAM2 Missense_Mutation p.E1271Q 0.21 deleterious(0) possibly_damaging(0.655) TCGA-05-5425-01 6 160645737 160645737 C A SLC22A2 Missense_Mutation p.R534I 0.18 deleterious(0.01) benign(0.25) TCGA-05-5425-01 6 161027644 161027644 G T LPA Missense_Mutation p.P884T 0.18 deleterious(0) probably_damaging(0.996) TCGA-05-5425-01 6 165715488 165715488 G A C6orf118 Missense_Mutation p.A108V 0.29 tolerated(0.08) probably_damaging(1) TCGA-05-5425-01 6 170155445 170155445 A T ERMARD Missense_Mutation p.H81L 0.34 deleterious(0) possibly_damaging(0.743) TCGA-05-5425-01 6 26091585 26091585 A C HFE Missense_Mutation p.E128D 0.06 deleterious(0.01) possibly_damaging(0.672) TCGA-05-5425-01 6 26189205 26189205 C T HIST1H4D Missense_Mutation p.A34T 0.06 tolerated(0.06) possibly_damaging(0.599) TCGA-05-5425-01 6 29054663 29054663 G T OR2B3 Missense_Mutation p.D121E 0.13 deleterious(0) probably_damaging(0.999) TCGA-05-5425-01 6 29640149 29640149 A G MOG 3'Flank 0.25 TCGA-05-5425-01 6 30131365 30131365 T G TRIM15 5'UTR 0.20 TCGA-05-5425-01 6 33996086 33996086 G T GRM4 Missense_Mutation p.L834M 0.14 deleterious(0) probably_damaging(0.912) TCGA-05-5425-01 6 34101253 34101253 C G GRM4 Missense_Mutation p.L7F 0.08 tolerated_low_confidence(0.71) benign(0.007) TCGA-05-5425-01 6 34499478 34499478 C A PACSIN1 Missense_Mutation p.P380H 0.48 deleterious(0) probably_damaging(0.914) TCGA-05-5425-01 6 35444099 35444099 C T TEAD3 Missense_Mutation p.V236M 0.06 tolerated(0.22) possibly_damaging(0.674) TCGA-05-5425-01 6 35773416 35773416 G C LHFPL5 5'UTR 0.11 TCGA-05-5425-01 6 39328218 39328218 G A KIF6 Nonsense_Mutation p.Q679* 0.08 TCGA-05-5425-01 6 39880040 39880040 G A MOCS1 Missense_Mutation p.R317C 0.11 deleterious(0) probably_damaging(1) TCGA-05-5425-01 6 43267366 43267366 T A SLC22A7 Missense_Mutation p.F169I 0.08 deleterious(0) probably_damaging(0.999) TCGA-05-5425-01 6 45882217 45882217 G C CLIC5 Intron 0.19 TCGA-05-5425-01 6 47763200 47763200 C A OPN5 Nonsense_Mutation p.Y219* 0.16 TCGA-05-5425-01 6 49578805 49578805 G T RHAG Silent p.L333L 0.14 TCGA-05-5425-01 6 49989610 49989610 C A DEFB110 Missense_Mutation p.W13C 0.10 tolerated(0.16) benign(0) TCGA-05-5425-01 6 5002426 5002426 C T RPP40 Silent p.L59L 0.05 TCGA-05-5425-01 6 56471269 56471269 C A DST Intron 0.11 TCGA-05-5425-01 6 56484516 56484516 C A DST Intron 0.11 TCGA-05-5425-01 6 56857295 56857295 A G BEND6 Silent p.K80K 0.15 TCGA-05-5425-01 6 57512673 57512673 C A PRIM2 3'UTR 0.06 TCGA-05-5425-01 6 6266798 6266798 C A F13A1 Missense_Mutation p.W188C 0.07 deleterious(0) probably_damaging(1) TCGA-05-5425-01 6 71569988 71569988 G C SMAP1 Missense_Mutation p.W452S 0.39 tolerated(0.18) unknown(0) TCGA-05-5425-01 6 80197179 80197179 C A LCA5 Missense_Mutation p.A546S 0.31 tolerated(0.72) benign(0.234) TCGA-05-5425-01 6 97720756 97720756 A G MMS22L Missense_Mutation p.Y144H 0.08 tolerated(0.1) benign(0.444) TCGA-05-5425-01 7 100189522 100189522 G T FBXO24 Missense_Mutation p.K223N 0.18 deleterious_low_confidence(0.01) benign(0.403) TCGA-05-5425-01 7 100373109 100373109 A T ZAN Missense_Mutation p.E1979V 0.11 unknown(0) TCGA-05-5425-01 7 100386844 100386844 A G ZAN Missense_Mutation p.N2410S 0.10 unknown(0) TCGA-05-5425-01 7 100552664 100552664 C A MUC3A Missense_Mutation p.T472N 0.09 deleterious(0.01) possibly_damaging(0.845) TCGA-05-5425-01 7 100853845 100853845 C G PLOD3 Missense_Mutation p.D490H 0.08 deleterious(0) possibly_damaging(0.902) TCGA-05-5425-01 7 100853846 100853846 C A PLOD3 Silent p.P489P 0.08 TCGA-05-5425-01 7 106508431 106508431 C A PIK3CG Missense_Mutation p.P142Q 0.17 tolerated(0.63) benign(0) TCGA-05-5425-01 7 108113021 108113021 C A PNPLA8 Nonsense_Mutation p.E725* 0.24 TCGA-05-5425-01 7 113558551 113558551 C G PPP1R3A Missense_Mutation p.Q167H 0.22 tolerated(0.17) benign(0.309) TCGA-05-5425-01 7 114268643 114268643 C A FOXP2 Missense_Mutation p.Q128K 0.21 deleterious(0) unknown(0) TCGA-05-5425-01 7 11871399 11871399 G A THSD7A Silent p.L58L 0.21 TCGA-05-5425-01 7 121652004 121652004 T G PTPRZ1 Missense_Mutation p.H968Q 0.22 tolerated_low_confidence(0.21) benign(0.007) TCGA-05-5425-01 7 122809329 122809329 C A SLC13A1 Silent p.S142S 0.19 TCGA-05-5425-01 7 127222944 127222944 C T GCC1 Silent p.E484E 0.15 TCGA-05-5425-01 7 127251669 127251669 C G PAX4 Missense_Mutation p.C270S 0.08 tolerated(0.27) benign(0.015) TCGA-05-5425-01 7 128491313 128491313 C A FLNC Missense_Mutation p.A1856D 0.11 tolerated(0.29) probably_damaging(0.982) TCGA-05-5425-01 7 129986367 129986367 C G CPA5 Missense_Mutation p.S14C 0.29 tolerated_low_confidence(0.19) unknown(0) TCGA-05-5425-01 7 130022004 130022004 T C CPA1 Missense_Mutation p.I146T 0.26 tolerated(0.06) benign(0.405) TCGA-05-5425-01 7 138341202 138341202 G A SVOPL Silent p.P175P 0.10 TCGA-05-5425-01 7 150439478 150439478 C A GIMAP5 Missense_Mutation p.P84H 0.25 deleterious(0.02) probably_damaging(0.974) TCGA-05-5425-01 7 150439479 150439479 C A GIMAP5 Silent p.P84P 0.25 TCGA-05-5425-01 7 154379600 154379600 C A DPP6 Intron 0.17 TCGA-05-5425-01 7 19156451 19156451 C G TWIST1 Missense_Mutation p.S165T 0.13 tolerated(0.11) benign(0.032) TCGA-05-5425-01 7 20418723 20418723 T G ITGB8 Silent p.P146P 0.08 TCGA-05-5425-01 7 2565073 2565073 A T LFNG Missense_Mutation p.N203Y 0.33 deleterious(0) probably_damaging(0.998) TCGA-05-5425-01 7 27169145 27169145 G T HOXA4 Missense_Mutation p.A221D 0.31 deleterious(0) probably_damaging(0.975) TCGA-05-5425-01 7 2740085 2740085 C T AMZ1 5'UTR 0.13 TCGA-05-5425-01 7 2974224 2974224 C A CARD11 Missense_Mutation p.D461Y 0.12 deleterious(0.03) benign(0.035) TCGA-05-5425-01 7 30655527 30655527 A T GARS Silent p.A349A 0.16 TCGA-05-5425-01 7 36561649 36561649 T A AOAH Missense_Mutation p.N532I 0.38 deleterious(0) probably_damaging(0.949) TCGA-05-5425-01 7 38424435 38424435 G T AMPH Missense_Mutation p.T691N 0.26 deleterious(0) probably_damaging(0.989) TCGA-05-5425-01 7 43508597 43508597 G T HECW1 Nonsense_Mutation p.E998* 0.13 TCGA-05-5425-01 7 48311759 48311759 C A ABCA13 Silent p.P832P 0.11 TCGA-05-5425-01 7 54612373 54612373 G T VSTM2A Missense_Mutation p.M46I 0.12 deleterious(0.01) possibly_damaging(0.892) TCGA-05-5425-01 7 57522778 57522778 G A ZNF716 Splice_Site p.X56_splice 0.07 TCGA-05-5425-01 7 62752272 62752272 G T ZNF733P RNA 0.15 TCGA-05-5425-01 7 73664086 73664086 G C RFC2 Missense_Mutation p.P70A 0.13 deleterious(0) probably_damaging(0.977) TCGA-05-5425-01 7 81336644 81336644 C A HGF Missense_Mutation p.E526D 0.21 tolerated(0.07) benign(0.022) TCGA-05-5425-01 7 82579889 82579889 C G PCLO Missense_Mutation p.G3339R 0.31 unknown(0) TCGA-05-5425-01 7 91714919 91714919 A G AKAP9 Silent p.L2981L 0.38 TCGA-05-5425-01 7 92146692 92146692 C A PEX1 Missense_Mutation p.E379D 0.23 tolerated(0.51) benign(0.001) TCGA-05-5425-01 7 97481671 97481671 C A ASNS Missense_Mutation p.R529L 0.33 tolerated(0.27) benign(0.201) TCGA-05-5425-01 8 102555568 102555568 G T GRHL2 Missense_Mutation p.L40F 0.11 deleterious(0) probably_damaging(0.999) TCGA-05-5425-01 8 108276559 108276559 G T ANGPT1 Missense_Mutation p.T409N 0.17 deleterious(0.04) benign(0.062) TCGA-05-5425-01 8 110293353 110293353 A G NUDCD1 Missense_Mutation p.I291T 0.20 tolerated(0.12) benign(0.003) TCGA-05-5425-01 8 110455957 110455957 A G PKHD1L1 Silent p.T1539T 0.38 TCGA-05-5425-01 8 110455958 110455958 G T PKHD1L1 Nonsense_Mutation p.E1540* 0.39 TCGA-05-5425-01 8 113301729 113301729 C A CSMD3 Missense_Mutation p.V3005F 0.47 deleterious(0.03) possibly_damaging(0.467) TCGA-05-5425-01 8 113349926 113349926 C A CSMD3 Silent p.P2229P 0.20 TCGA-05-5425-01 8 114110984 114110984 C T CSMD3 Splice_Site p.X306_splice 0.07 TCGA-05-5425-01 8 11412861 11412861 C T BLK Nonsense_Mutation p.Q214* 0.18 TCGA-05-5425-01 8 114389076 114389076 C A CSMD3 Intron 0.08 TCGA-05-5425-01 8 12943439 12943439 C G DLC1 Missense_Mutation p.G1490R 0.21 deleterious(0) probably_damaging(1) TCGA-05-5425-01 8 133920554 133920554 A T TG Missense_Mutation p.E1324V 0.08 deleterious(0.01) possibly_damaging(0.545) TCGA-05-5425-01 8 134232832 134232832 G T WISP1 Missense_Mutation p.G120C 0.12 deleterious(0) probably_damaging(0.983) TCGA-05-5425-01 8 139163465 139163465 C A FAM135B Missense_Mutation p.D1085Y 0.21 deleterious(0.02) possibly_damaging(0.492) TCGA-05-5425-01 8 144810850 144810850 C A FAM83H Missense_Mutation p.V261L 0.29 tolerated(0.74) probably_damaging(0.925) TCGA-05-5425-01 8 21900426 21900426 G T FGF17 5'UTR 0.29 TCGA-05-5425-01 8 30560645 30560645 C A GSR Missense_Mutation p.G202V 0.30 deleterious(0) probably_damaging(0.999) TCGA-05-5425-01 8 30703989 30703989 C A TEX15 Missense_Mutation p.V849L 0.24 tolerated(0.1) benign(0.003) TCGA-05-5425-01 8 3081280 3081280 C A CSMD1 Silent p.P1485P 0.22 TCGA-05-5425-01 8 3081281 3081281 G A CSMD1 Missense_Mutation p.P1485L 0.22 possibly_damaging(0.574) TCGA-05-5425-01 8 41906565 41906565 G T KAT6A 5'UTR 0.10 TCGA-05-5425-01 8 42162703 42162703 A T IKBKB Splice_Site p.X130_splice 0.15 TCGA-05-5425-01 8 51362231 51362231 G A SNTG1 Missense_Mutation p.G75R 0.11 deleterious(0) probably_damaging(0.995) TCGA-05-5425-01 8 51362232 51362232 G T SNTG1 Missense_Mutation p.G75V 0.10 deleterious(0) probably_damaging(0.986) TCGA-05-5425-01 8 53079509 53079509 C A ST18 Silent p.P369P 0.10 TCGA-05-5425-01 8 53454952 53454952 C T FAM150A Missense_Mutation p.G82R 0.28 deleterious(0) probably_damaging(1) TCGA-05-5425-01 8 57026314 57026314 C T MOS Silent p.K76K 0.14 TCGA-05-5425-01 8 68131673 68131673 T G ARFGEF1 Missense_Mutation p.Q1444P 0.33 tolerated(0.08) possibly_damaging(0.904) TCGA-05-5425-01 8 6873527 6873527 C A DEFA3 Missense_Mutation p.W90C 0.31 tolerated(0.07) probably_damaging(0.994) TCGA-05-5425-01 8 74941229 74941229 C A LY96 Missense_Mutation p.S141R 0.06 deleterious(0.01) benign(0.29) TCGA-05-5425-01 8 88885799 88885799 G T DCAF4L2 Nonsense_Mutation p.S134* 0.11 TCGA-05-5425-01 8 95188891 95188891 G A CDH17 Missense_Mutation p.A101V 0.40 tolerated(0.18) benign(0.013) TCGA-05-5425-01 9 1053751 1053751 T A DMRT2 Missense_Mutation p.N185K 0.23 tolerated(0.21) benign(0.029) TCGA-05-5425-01 9 111945062 111945062 C G EPB41L4B Missense_Mutation p.V812L 0.27 deleterious_low_confidence(0) benign(0.009) TCGA-05-5425-01 9 112145729 112145729 G C PTPN3 Missense_Mutation p.R786G 0.32 deleterious(0) probably_damaging(1) TCGA-05-5425-01 9 116931472 116931472 G A COL27A1 Missense_Mutation p.G546E 0.19 unknown(0) TCGA-05-5425-01 9 135470484 135470484 C T DDX31 Silent p.K775K 0.07 TCGA-05-5425-01 9 136501520 136501520 C A DBH Missense_Mutation p.S9R 0.10 tolerated_low_confidence(0.06) benign(0.054) TCGA-05-5425-01 9 139945771 139945771 T C ENTPD2 Silent p.T146T 0.21 TCGA-05-5425-01 9 140938242 140938242 G - CACNA1B Frame_Shift_Del p.E1102Kfs*15 0.29 TCGA-05-5425-01 9 17789439 17789439 A T SH3GL2 Missense_Mutation p.K172M 0.12 deleterious(0) probably_damaging(1) TCGA-05-5425-01 9 43828172 43828172 G T CNTNAP3B Missense_Mutation p.Q476H 0.20 tolerated(0.93) benign(0.004) TCGA-05-5425-01 9 6015239 6015239 C G RANBP6 Silent p.V123V 0.07 TCGA-05-5425-01 9 70490083 70490083 C A CBWD5 5'UTR 0.11 TCGA-05-5425-01 9 74489639 74489639 A T ABHD17B Missense_Mutation p.C120S 0.10 deleterious(0) probably_damaging(0.978) TCGA-05-5425-01 9 77377884 77377884 C A TRPM6 Nonsense_Mutation p.E1235* 0.27 TCGA-05-5425-01 9 84609053 84609053 C A SPATA31D1 Missense_Mutation p.T1223N 0.32 deleterious(0) probably_damaging(0.909) TCGA-05-5425-01 9 8486071 8486071 C T PTPRD Missense_Mutation p.E916K 0.27 deleterious(0.03) benign(0.036) TCGA-05-5425-01 9 8486172 8486172 G T PTPRD Missense_Mutation p.A882D 0.15 deleterious(0.04) probably_damaging(0.998) TCGA-05-5425-01 X 104463698 104463698 C G TEX13A Missense_Mutation p.R393T 0.35 deleterious(0.04) possibly_damaging(0.849) TCGA-05-5425-01 X 105277677 105277677 C G SERPINA7 Silent p.V354V 0.26 TCGA-05-5425-01 X 119048729 119048729 G A AKAP14 Missense_Mutation p.S110N 0.22 deleterious(0.01) probably_damaging(0.991) TCGA-05-5425-01 X 120009185 120009185 G T CT47B1 Silent p.R114R 0.33 TCGA-05-5425-01 X 135289240 135289240 C A FHL1 Silent p.P74P 0.31 TCGA-05-5425-01 X 144904080 144904080 G C SLITRK2 Missense_Mutation p.C46S 0.24 deleterious(0) probably_damaging(0.999) TCGA-05-5425-01 X 152813361 152813361 G T ATP2B3 Nonsense_Mutation p.E343* 0.24 TCGA-05-5425-01 X 16141997 16141997 T C GRPR 5'UTR 0.32 TCGA-05-5425-01 X 26157194 26157194 C A MAGEB18 Missense_Mutation p.T31N 0.20 deleterious(0.01) benign(0.445) TCGA-05-5425-01 X 27998072 27998072 C A DCAF8L1 Silent p.G460G 0.28 TCGA-05-5425-01 X 32632455 32632455 G T DMD Missense_Mutation p.L483I 0.43 benign(0.002) TCGA-05-5425-01 X 32663190 32663190 G T DMD Missense_Mutation p.A347D 0.41 probably_damaging(0.959) TCGA-05-5425-01 X 41519762 41519762 C A CASK Missense_Mutation p.R254L 0.15 tolerated(0.68) benign(0.003) TCGA-05-5425-01 X 41519769 41519769 G C CASK Missense_Mutation p.L252V 0.16 deleterious(0.02) possibly_damaging(0.49) TCGA-05-5425-01 X 47315817 47315817 T C ZNF41 Intron 0.22 TCGA-05-5425-01 X 53172301 53172301 A G LINC01155 RNA 0.45 TCGA-05-5425-01 X 65423352 65423352 G A HEPH Missense_Mutation p.V796I 0.19 tolerated(0.27) benign(0.007) TCGA-05-5425-01 X 73067089 73067089 A T XIST RNA 0.47 TCGA-05-5425-01 X 83724066 83724066 A G HDX Missense_Mutation p.I222T 0.24 tolerated(0.54) benign(0.004) TCGA-05-5428-01 10 106152064 106152064 C A CCDC147 Nonsense_Mutation p.S480* 0.15 TCGA-05-5428-01 10 117040882 117040882 C A ATRNL1 Silent p.T706T 0.22 TCGA-05-5428-01 10 15255941 15255941 T A FAM171A1 Missense_Mutation p.E549V 0.23 deleterious(0.03) probably_damaging(0.993) TCGA-05-5428-01 10 16942702 16942702 G A CUBN Nonsense_Mutation p.Q2778* 0.16 TCGA-05-5428-01 10 16949593 16949593 C T CUBN Missense_Mutation p.G2540E 0.20 deleterious(0.01) probably_damaging(1) TCGA-05-5428-01 10 28023610 28023610 C G MKX Missense_Mutation p.E205Q 0.47 tolerated(0.2) possibly_damaging(0.541) TCGA-05-5428-01 10 45798999 45798999 A T OR13A1 Nonsense_Mutation p.L291* 0.16 TCGA-05-5428-01 10 48390446 48390446 C A RBP3 Silent p.L144L 0.11 TCGA-05-5428-01 10 5040898 5040898 G C AKR1C2 Missense_Mutation p.I163M 0.04 deleterious(0) probably_damaging(1) TCGA-05-5428-01 10 50723384 50723384 C T ERCC6-PGBD3 Missense_Mutation p.E1061K 0.22 tolerated_low_confidence(0.89) unknown(0) TCGA-05-5428-01 10 58118196 58118196 C T ZWINT Missense_Mutation p.D273N 0.37 tolerated_low_confidence(0.08) possibly_damaging(0.523) TCGA-05-5428-01 10 61424037 61424037 C A SLC16A9 Silent p.T128T 0.18 TCGA-05-5428-01 10 72292514 72292514 C A PALD1 Silent p.P257P 0.44 TCGA-05-5428-01 10 72300942 72300942 C T PALD1 Nonsense_Mutation p.Q665* 0.42 TCGA-05-5428-01 10 79590564 79590564 C T DLG5 Missense_Mutation p.D606N 0.22 deleterious(0) probably_damaging(0.995) TCGA-05-5428-01 10 87615902 87615902 C A GRID1 Missense_Mutation p.A333S 0.35 tolerated(0.1) probably_damaging(0.999) TCGA-05-5428-01 10 98105779 98105779 C A OPALIN Silent p.V115V 0.22 TCGA-05-5428-01 10 99531423 99531423 G A SFRP5 Silent p.I56I 0.10 TCGA-05-5428-01 11 111864406 111864406 G T DIXDC1 Missense_Mutation p.R459L 0.34 deleterious(0.03) benign(0.138) TCGA-05-5428-01 11 113848528 113848528 C T HTR3A Silent p.L41L 0.12 TCGA-05-5428-01 11 124551353 124551353 G C SPA17 Missense_Mutation p.E75Q 0.15 tolerated(0.45) benign(0.004) TCGA-05-5428-01 11 124551354 124551354 A C SPA17 Missense_Mutation p.E75A 0.16 deleterious(0.03) benign(0.055) TCGA-05-5428-01 11 134180979 134180979 C A GLB1L3 Missense_Mutation p.P401H 0.22 deleterious(0) probably_damaging(0.993) TCGA-05-5428-01 11 15098972 15098972 G T CALCB Missense_Mutation p.R122L 0.32 deleterious(0) probably_damaging(0.955) TCGA-05-5428-01 11 30925143 30925143 G C DCDC1 Missense_Mutation p.R1466G 0.23 tolerated(0.38) benign(0) TCGA-05-5428-01 11 31115714 31115714 G A DCDC1 Silent p.V667V 0.29 TCGA-05-5428-01 11 31815103 31815103 T A PAX6 Splice_Site p.X320_splice 0.14 TCGA-05-5428-01 11 4608963 4608963 A T OR52I2 Silent p.L307L 0.27 TCGA-05-5428-01 11 47296127 47296127 G A MADD Missense_Mutation p.D26N 0.23 tolerated(0.42) benign(0.235) TCGA-05-5428-01 11 48328531 48328531 A G OR4S1 Missense_Mutation p.M253V 0.26 tolerated(0.12) benign(0.005) TCGA-05-5428-01 11 4967800 4967800 G A OR51A4 Silent p.S177S 0.11 TCGA-05-5428-01 11 51515622 51515622 C A OR4C46 Missense_Mutation p.T114N 0.30 deleterious_low_confidence(0.02) possibly_damaging(0.781) TCGA-05-5428-01 11 55322326 55322326 C G OR4C15 Missense_Mutation p.P182A 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-05-5428-01 11 55433434 55433434 C T OR4C6 Silent p.P264P 0.26 TCGA-05-5428-01 11 55579618 55579618 C A OR5L1 Missense_Mutation p.L226M 0.22 tolerated(0.11) possibly_damaging(0.782) TCGA-05-5428-01 11 55703699 55703699 G C OR5I1 Missense_Mutation p.P60A 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-05-5428-01 11 55872708 55872708 C T OR8H2 Missense_Mutation p.L64F 0.19 deleterious(0.01) probably_damaging(0.962) TCGA-05-5428-01 11 55890038 55890038 C T OR8H3 Missense_Mutation p.L64F 0.07 deleterious(0.01) probably_damaging(0.984) TCGA-05-5428-01 11 55904959 55904959 G T OR8J3 Missense_Mutation p.P79H 0.34 deleterious(0) probably_damaging(0.999) TCGA-05-5428-01 11 55904960 55904960 G T OR8J3 Missense_Mutation p.P79T 0.32 deleterious(0) probably_damaging(0.999) TCGA-05-5428-01 11 56468369 56468369 G T OR9G1 Missense_Mutation p.R169L 0.10 deleterious(0.01) benign(0.152) TCGA-05-5428-01 11 60268517 60268517 G T MS4A12 Splice_Site p.X93_splice 0.24 TCGA-05-5428-01 11 617536 617536 C G CDHR5 Missense_Mutation p.E785Q 0.20 deleterious(0) possibly_damaging(0.466) TCGA-05-5428-01 11 6231697 6231697 C T C11orf42 Silent p.L230L 0.24 TCGA-05-5428-01 11 64604410 64604410 C T CDC42BPG Silent p.L429L 0.12 TCGA-05-5428-01 11 65386199 65386199 G A PCNXL3 Missense_Mutation p.E456K 0.10 deleterious(0.04) benign(0.127) TCGA-05-5428-01 11 66049783 66049783 G C CNIH2 Silent p.G45G 0.11 TCGA-05-5428-01 11 66325509 66325509 C A CTD-3074O7.2 3'Flank 0.48 TCGA-05-5428-01 11 67209219 67209219 C T CORO1B Missense_Mutation p.V147M 0.19 deleterious(0) possibly_damaging(0.767) TCGA-05-5428-01 11 73814377 73814377 C G C2CD3 Missense_Mutation p.Q793H 0.25 deleterious(0.03) benign(0.047) TCGA-05-5428-01 11 75146592 75146592 C T GDPD5 Missense_Mutation p.G593D 0.66 deleterious_low_confidence(0.02) benign(0.046) TCGA-05-5428-01 11 88386426 88386426 G T GRM5 Missense_Mutation p.P353T 0.37 deleterious(0) probably_damaging(0.999) TCGA-05-5428-01 11 89896592 89896592 G T NAALAD2 Missense_Mutation p.S397I 0.20 deleterious(0.01) benign(0.062) TCGA-05-5428-01 11 92564916 92564916 A T FAT3 Missense_Mutation p.S3204C 0.41 possibly_damaging(0.759) TCGA-05-5428-01 12 112622620 112622620 C T HECTD4 Missense_Mutation p.D3238N 0.49 probably_damaging(0.996) TCGA-05-5428-01 12 114385258 114385258 C T RBM19 Missense_Mutation p.E430K 0.30 deleterious(0) probably_damaging(0.994) TCGA-05-5428-01 12 12022455 12022455 G C ETV6 Silent p.T187T 0.27 TCGA-05-5428-01 12 121712118 121712118 T G CAMKK2 Missense_Mutation p.D71A 0.74 tolerated_low_confidence(0.13) benign(0.007) TCGA-05-5428-01 12 125618592 125618592 C T AACS Silent p.T531T 0.64 TCGA-05-5428-01 12 133291502 133291502 G C PGAM5 Missense_Mutation p.E84Q 0.15 tolerated(0.06) benign(0.017) TCGA-05-5428-01 12 21422397 21422397 A G SLCO1A2 3'UTR 0.40 TCGA-05-5428-01 12 23999001 23999001 C T SOX5 Missense_Mutation p.E133K 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-05-5428-01 12 44148624 44148624 C A PUS7L Missense_Mutation p.C142F 0.75 tolerated(0.52) benign(0.002) TCGA-05-5428-01 12 493250 493250 G C KDM5A Missense_Mutation p.L105V 0.26 deleterious(0) possibly_damaging(0.6) TCGA-05-5428-01 12 56552228 56552228 G C MYL6 Intron 0.36 TCGA-05-5428-01 12 57619575 57619575 T A NXPH4 3'UTR 0.64 TCGA-05-5428-01 12 58121198 58121198 G T AGAP2 Missense_Mutation p.R1009S 0.38 tolerated(1) benign(0.004) TCGA-05-5428-01 12 62783402 62783402 A T USP15 Silent p.I525I 0.44 TCGA-05-5428-01 12 6707449 6707449 T G CHD4 Missense_Mutation p.Q542P 0.34 deleterious(0) benign(0.061) TCGA-05-5428-01 12 94975550 94975550 C A TMCC3 Silent p.L281L 0.52 TCGA-05-5428-01 13 109562458 109562458 G A MYO16 Missense_Mutation p.E607K 0.26 tolerated(0.19) benign(0.17) TCGA-05-5428-01 13 109610051 109610051 C A MYO16 Silent p.T625T 0.07 TCGA-05-5428-01 13 110434431 110434431 C A IRS2 Missense_Mutation p.D1324Y 0.40 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-05-5428-01 13 111896599 111896599 C T ARHGEF7 Missense_Mutation p.S324F 0.17 deleterious(0) possibly_damaging(0.585) TCGA-05-5428-01 13 113508590 113508590 C G ATP11A Intron 0.19 TCGA-05-5428-01 13 23910525 23910525 C A SACS Missense_Mutation p.G2497V 0.36 probably_damaging(1) TCGA-05-5428-01 13 31898026 31898026 C T B3GALTL Silent p.F441F 0.38 TCGA-05-5428-01 13 53616044 53616044 G T OLFM4 Splice_Site p.X120_splice 0.23 TCGA-05-5428-01 13 61084791 61084791 G T TDRD3 Missense_Mutation p.R348I 0.34 deleterious(0) probably_damaging(1) TCGA-05-5428-01 13 96485250 96485250 C G UGGT2 Missense_Mutation p.E1487Q 0.17 deleterious(0) probably_damaging(0.997) TCGA-05-5428-01 13 98829362 98829362 G T RNF113B Missense_Mutation p.H43Q 0.48 tolerated(0.56) benign(0.004) TCGA-05-5428-01 14 105643016 105643016 C A NUDT14 Missense_Mutation p.G95C 0.20 deleterious(0) probably_damaging(0.998) TCGA-05-5428-01 14 20296313 20296313 G T OR4N2 Missense_Mutation p.A236S 0.36 deleterious(0) probably_damaging(0.99) TCGA-05-5428-01 14 20443737 20443737 C A OR4K15 Silent p.S20S 0.23 TCGA-05-5428-01 14 20443738 20443738 C A OR4K15 Missense_Mutation p.L21I 0.22 tolerated_low_confidence(0.36) benign(0.006) TCGA-05-5428-01 14 21511199 21511199 G T RNASE7 Silent p.L16L 0.33 TCGA-05-5428-01 14 22038045 22038045 G A OR10G3 Silent p.P277P 0.28 TCGA-05-5428-01 14 22592001 22592001 G T TRAV26-1 Missense_Mutation p.C29F 0.44 tolerated(0.37) benign(0.007) TCGA-05-5428-01 14 22631687 22631687 C A TRAV29DV5 Missense_Mutation p.N93K 0.22 deleterious(0.03) benign(0.34) TCGA-05-5428-01 14 23944783 23944783 G A NGDN Missense_Mutation p.R100H 0.43 deleterious(0.05) benign(0.28) TCGA-05-5428-01 14 24912021 24912021 C T SDR39U1 5'Flank 0.15 TCGA-05-5428-01 14 30095757 30095757 G A PRKD1 Silent p.I577I 0.26 TCGA-05-5428-01 14 30396585 30396585 G A PRKD1 Missense_Mutation p.P45L 0.40 deleterious(0.03) unknown(0) TCGA-05-5428-01 14 52188726 52188726 G T FRMD6 Nonsense_Mutation p.E474* 0.25 TCGA-05-5428-01 14 57268855 57268855 G A OTX2 Silent p.S164S 0.11 TCGA-05-5428-01 14 59108331 59108331 G T DACT1 Missense_Mutation p.G167V 0.19 deleterious(0) probably_damaging(0.996) TCGA-05-5428-01 14 70991507 70991507 G C ADAM20 Missense_Mutation p.L40V 0.42 tolerated_low_confidence(0.09) benign(0.242) TCGA-05-5428-01 14 71518646 71518646 T C PCNX Silent p.S1498S 0.46 TCGA-05-5428-01 14 74008311 74008311 A G ACOT1 Missense_Mutation p.Y191C 0.52 deleterious(0.01) benign(0.016) TCGA-05-5428-01 14 92353592 92353592 G A FBLN5 Silent p.F228F 0.05 TCGA-05-5428-01 14 94156556 94156556 C T UNC79 Silent p.A2255A 0.29 TCGA-05-5428-01 14 94754747 94754747 G T SERPINA10 Missense_Mutation p.L290M 0.41 deleterious(0) probably_damaging(1) TCGA-05-5428-01 15 22473173 22473173 G T IGHV4OR15-8 Missense_Mutation p.P33H 0.11 deleterious(0) probably_damaging(0.998) TCGA-05-5428-01 15 27159959 27159959 C T GABRA5 Silent p.I169I 0.39 TCGA-05-5428-01 15 27778114 27778114 G A GABRG3 3'UTR 0.67 TCGA-05-5428-01 15 41796253 41796253 G T LTK Missense_Mutation p.P846T 0.67 tolerated_low_confidence(0.19) benign(0.007) TCGA-05-5428-01 15 41991273 41991273 A T MGA Nonsense_Mutation p.R702* 0.46 TCGA-05-5428-01 15 48624438 48624438 C T DUT Intron 0.40 TCGA-05-5428-01 15 75705247 75705247 G C SIN3A Missense_Mutation p.P205A 0.17 deleterious(0.03) probably_damaging(0.993) TCGA-05-5428-01 15 83926181 83926181 G T BNC1 3'UTR 0.61 TCGA-05-5428-01 15 88472301 88472301 G T NTRK3 Intron 0.75 TCGA-05-5428-01 16 15771799 15771799 G T NDE1 Missense_Mutation p.A127S 0.40 deleterious(0.04) benign(0.284) TCGA-05-5428-01 16 20352544 20352544 C T UMOD Silent p.E482E 0.18 TCGA-05-5428-01 16 2042716 2042716 G A SYNGR3 Silent p.T139T 0.62 TCGA-05-5428-01 16 20432712 20432712 G T ACSM5 Silent p.V252V 0.48 TCGA-05-5428-01 16 2048280 2048280 C G ZNF598 Missense_Mutation p.D890H 0.45 probably_damaging(0.979) TCGA-05-5428-01 16 2231382 2231382 C A CASKIN1 Missense_Mutation p.A663S 0.50 benign(0.04) TCGA-05-5428-01 16 24166083 24166083 G A PRKCB Missense_Mutation p.D382N 0.14 deleterious(0) possibly_damaging(0.574) TCGA-05-5428-01 16 27374394 27374394 G T IL4R Missense_Mutation p.G574V 0.21 deleterious(0) probably_damaging(0.996) TCGA-05-5428-01 16 2813861 2813861 G A SRRM2 Missense_Mutation p.R1111K 0.63 unknown(0) TCGA-05-5428-01 16 30732519 30732519 C T SRCAP Missense_Mutation p.S1088F 0.34 unknown(0) TCGA-05-5428-01 16 3076108 3076108 C G THOC6 Missense_Mutation p.L89V 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-05-5428-01 16 68862125 68862125 A G CDH1 Missense_Mutation p.K738R 0.51 deleterious(0.03) probably_damaging(1) TCGA-05-5428-01 16 72110531 72110531 G T HPR Missense_Mutation p.V200F 0.36 tolerated(0.05) benign(0.05) TCGA-05-5428-01 16 77325355 77325355 C G ADAMTS18 Missense_Mutation p.L1070F 0.27 tolerated(0.05) benign(0.126) TCGA-05-5428-01 17 10310251 10310251 G A MYH8 Missense_Mutation p.H671Y 0.16 deleterious(0) probably_damaging(0.919) TCGA-05-5428-01 17 10450921 10450921 C A MYH2 Missense_Mutation p.K73N 0.59 deleterious(0.04) benign(0.022) TCGA-05-5428-01 17 19316938 19316938 A T RNF112 Missense_Mutation p.S257C 0.47 deleterious(0.04) possibly_damaging(0.531) TCGA-05-5428-01 17 25932628 25932628 G T KSR1 Nonsense_Mutation p.E480* 0.33 TCGA-05-5428-01 17 33510550 33510550 G - UNC45B Frame_Shift_Del p.A829Pfs*3 0.47 TCGA-05-5428-01 17 37071325 37071325 G T LASP1 Missense_Mutation p.A180S 0.16 tolerated(1) benign(0.002) TCGA-05-5428-01 17 39538048 39538048 C T KRT34 Splice_Site p.X159_splice 0.35 TCGA-05-5428-01 17 40996835 40996835 G C AOC2 Missense_Mutation p.L64F 0.22 deleterious(0) probably_damaging(0.989) TCGA-05-5428-01 17 44626163 44626163 C T LRRC37A2 Nonsense_Mutation p.Q1220* 0.12 TCGA-05-5428-01 17 4576080 4576080 C T PELP1 Missense_Mutation p.E736K 0.36 benign(0.292) TCGA-05-5428-01 17 60484419 60484419 C A EFCAB3 Nonsense_Mutation p.S290* 0.17 TCGA-05-5428-01 17 61744398 61744398 C T MAP3K3 Silent p.P191P 0.21 TCGA-05-5428-01 17 62748024 62748024 T A hsa-mir-6080 RNA 0.17 TCGA-05-5428-01 17 66928614 66928614 A T ABCA8 Silent p.V204V 0.20 TCGA-05-5428-01 17 71427796 71427796 A T SDK2 Nonsense_Mutation p.L442* 0.15 TCGA-05-5428-01 17 72209803 72209803 G C TTYH2 Missense_Mutation p.R26P 0.18 tolerated(0.08) possibly_damaging(0.669) TCGA-05-5428-01 17 74865078 74865078 C A MGAT5B 5'Flank 0.25 TCGA-05-5428-01 17 75196674 75196674 G C SEC14L1 Missense_Mutation p.V310L 0.46 deleterious(0.03) possibly_damaging(0.527) TCGA-05-5428-01 17 7577568 7577568 C T TP53 Missense_Mutation p.C238Y 0.47 deleterious(0) probably_damaging(1) TCGA-05-5428-01 17 80015086 80015086 T C GPS1 3'UTR 0.46 TCGA-05-5428-01 17 8012568 8012568 G A ALOXE3 Missense_Mutation p.R628W 0.55 deleterious(0.01) possibly_damaging(0.766) TCGA-05-5428-01 18 30260371 30260371 C A KLHL14 Splice_Site p.X477_splice 0.50 TCGA-05-5428-01 18 30806759 30806759 G A CCDC178 Nonsense_Mutation p.Q552* 0.20 TCGA-05-5428-01 18 30873253 30873253 C A CCDC178 Missense_Mutation p.S349I 0.38 tolerated(0.15) benign(0.02) TCGA-05-5428-01 18 31314323 31314323 G C ASXL3 Missense_Mutation p.K342N 0.32 probably_damaging(1) TCGA-05-5428-01 18 31314324 31314324 G T ASXL3 Nonsense_Mutation p.E343* 0.31 TCGA-05-5428-01 18 31323015 31323015 G T ASXL3 Missense_Mutation p.R1068L 0.44 probably_damaging(0.998) TCGA-05-5428-01 18 31324969 31324969 T A ASXL3 Silent p.A1719A 0.21 TCGA-05-5428-01 18 44561102 44561102 G T TCEB3B Silent p.L178L 0.41 TCGA-05-5428-01 18 48439200 48439200 G C ME2 Missense_Mutation p.R91T 0.19 tolerated(0.05) probably_damaging(1) TCGA-05-5428-01 18 5489094 5489094 C A EPB41L3 Missense_Mutation p.G30V 0.47 tolerated(0.26) benign(0.06) TCGA-05-5428-01 18 60985525 60985525 G A BCL2 Silent p.T125T 0.15 TCGA-05-5428-01 18 64178894 64178894 C T CDH19 Missense_Mutation p.R496K 0.20 tolerated(1) benign(0.058) TCGA-05-5428-01 18 70209225 70209225 G A CBLN2 Silent p.P57P 0.21 TCGA-05-5428-01 18 76753481 76753481 T G SALL3 Missense_Mutation p.I497S 0.59 deleterious(0) probably_damaging(0.998) TCGA-05-5428-01 18 77455253 77455253 A T CTDP1 Missense_Mutation p.S115C 0.44 deleterious(0.03) benign(0.077) TCGA-05-5428-01 19 10402220 10402220 G A ICAM5 Silent p.E136E 0.22 TCGA-05-5428-01 19 1061853 1061853 G C ABCA7 Missense_Mutation p.A1846P 0.19 tolerated(0.48) benign(0.001) TCGA-05-5428-01 19 11036359 11036359 C T YIPF2 Intron 0.33 TCGA-05-5428-01 19 11833307 11833307 G A ZNF823 Nonsense_Mutation p.R348* 0.29 TCGA-05-5428-01 19 16025572 16025572 C A CYP4F11 Missense_Mutation p.G417C 0.76 deleterious(0) probably_damaging(0.999) TCGA-05-5428-01 19 31769592 31769592 C T TSHZ3 Silent p.Q369Q 0.07 TCGA-05-5428-01 19 3611929 3611929 G A CACTIN Missense_Mutation p.R757W 0.32 deleterious(0) probably_damaging(1) TCGA-05-5428-01 19 36350469 36350469 C T KIRREL2 Silent p.V203V 0.22 TCGA-05-5428-01 19 40383965 40383965 G T FCGBP Silent p.T3215T 0.29 TCGA-05-5428-01 19 4207248 4207248 G T ANKRD24 Missense_Mutation p.G159V 0.58 deleterious(0) probably_damaging(0.972) TCGA-05-5428-01 19 43680272 43680272 G T PSG5 Silent p.I153I 0.66 TCGA-05-5428-01 19 44661190 44661190 G C ZNF234 Missense_Mutation p.E341Q 0.24 deleterious(0) probably_damaging(0.984) TCGA-05-5428-01 19 44681648 44681648 C G ZNF226 Missense_Mutation p.H745D 0.05 deleterious(0) probably_damaging(1) TCGA-05-5428-01 19 50309968 50309968 G C AP2A1 Missense_Mutation p.E963Q 0.08 deleterious(0.02) probably_damaging(0.913) TCGA-05-5428-01 19 51563277 51563277 G T KLK13 Missense_Mutation p.H105N 0.62 deleterious(0.01) benign(0.079) TCGA-05-5428-01 19 52497585 52497585 C T ZNF615 Missense_Mutation p.M259I 0.04 tolerated(0.74) benign(0) TCGA-05-5428-01 19 55179523 55179523 C A LILRB4 3'UTR 0.64 TCGA-05-5428-01 19 55365491 55365491 C T KIR3DL2 Silent p.I215I 0.79 TCGA-05-5428-01 19 56163807 56163807 G T CCDC106 Missense_Mutation p.D180Y 0.62 deleterious(0.01) probably_damaging(0.981) TCGA-05-5428-01 19 58101828 58101828 G - ZIK1 Frame_Shift_Del p.K218Rfs*65 0.45 TCGA-05-5428-01 19 7806658 7806658 G T CD209 3'UTR 0.55 TCGA-05-5428-01 19 9090220 9090220 T A MUC16 Missense_Mutation p.Q532L 0.67 unknown(0) TCGA-05-5428-01 19 9204055 9204055 C T OR1M1 Silent p.I45I 0.22 TCGA-05-5428-01 1 109815340 109815340 C A CELSR2 Missense_Mutation p.D2711E 0.22 tolerated(0.82) benign(0.001) TCGA-05-5428-01 1 110766518 110766518 G T KCNC4 Silent p.R537R 0.38 TCGA-05-5428-01 1 114499818 114499818 C G HIPK1 Missense_Mutation p.I555M 0.13 deleterious(0.02) possibly_damaging(0.629) TCGA-05-5428-01 1 11867212 11867212 G A CLCN6 Missense_Mutation p.E38K 0.21 tolerated(0.14) benign(0.05) TCGA-05-5428-01 1 12331089 12331089 G A VPS13D Missense_Mutation p.E671K 0.09 possibly_damaging(0.548) TCGA-05-5428-01 1 152282032 152282032 G T FLG Missense_Mutation p.S1777Y 0.32 possibly_damaging(0.608) TCGA-05-5428-01 1 156214604 156214604 G C PAQR6 Silent p.L130L 0.12 TCGA-05-5428-01 1 156622224 156622224 T A BCAN Silent p.S494S 0.43 TCGA-05-5428-01 1 157557276 157557276 C G FCRL4 Missense_Mutation p.E213Q 0.15 tolerated(0.09) benign(0.133) TCGA-05-5428-01 1 157666120 157666120 G T FCRL3 Intron 0.42 TCGA-05-5428-01 1 157666121 157666121 G T FCRL3 Intron 0.42 TCGA-05-5428-01 1 158059508 158059508 G T KIRREL Missense_Mutation p.G391V 0.43 deleterious(0) possibly_damaging(0.86) TCGA-05-5428-01 1 158450321 158450321 G C OR10R2 Silent p.V218V 0.14 TCGA-05-5428-01 1 158627313 158627313 G A SPTA1 Missense_Mutation p.P920L 0.14 deleterious(0.01) benign(0.255) TCGA-05-5428-01 1 159170655 159170655 C T CADM3 Silent p.I414I 0.13 TCGA-05-5428-01 1 160106720 160106720 C T ATP1A2 Silent p.F913F 0.16 TCGA-05-5428-01 1 161130616 161130616 G T USP21 Silent p.R62R 0.38 TCGA-05-5428-01 1 165737916 165737916 C T TMCO1 Intron 0.05 TCGA-05-5428-01 1 169099285 169099286 - G ATP1B1 Frame_Shift_Ins p.K203Efs*3 0.31 TCGA-05-5428-01 1 172425554 172425554 G T C1orf105 Splice_Site p.X67_splice 0.41 TCGA-05-5428-01 1 175372452 175372452 G A TNR Missense_Mutation p.P267L 0.34 tolerated(0.89) benign(0.013) TCGA-05-5428-01 1 176762727 176762727 C G PAPPA2 Silent p.P1684P 0.37 TCGA-05-5428-01 1 190068088 190068088 G T BRINP3 Missense_Mutation p.P454Q 0.27 tolerated(0.58) benign(0.002) TCGA-05-5428-01 1 203026012 203026012 C G PPFIA4 Missense_Mutation p.R275G 0.55 deleterious(0) probably_damaging(0.951) TCGA-05-5428-01 1 214171068 214171068 G T PROX1 Missense_Mutation p.G397V 0.28 tolerated(0.14) probably_damaging(0.981) TCGA-05-5428-01 1 21944462 21944462 C G RAP1GAP Missense_Mutation p.E88Q 0.19 tolerated(0.05) benign(0.12) TCGA-05-5428-01 1 226923450 226923450 G T ITPKB Silent p.I570I 0.08 TCGA-05-5428-01 1 228566574 228566574 A G OBSCN 3'UTR 0.38 TCGA-05-5428-01 1 234529116 234529116 G C TARBP1 Missense_Mutation p.L1518V 0.22 tolerated(0.11) benign(0.412) TCGA-05-5428-01 1 235377133 235377133 C A ARID4B Nonsense_Mutation p.E598* 0.36 TCGA-05-5428-01 1 235418974 235418974 C A ARID4B Splice_Site p.X92_splice 0.52 TCGA-05-5428-01 1 235418975 235418975 C A ARID4B Missense_Mutation p.V92F 0.53 deleterious(0) probably_damaging(0.997) TCGA-05-5428-01 1 235969806 235969806 C A LYST Missense_Mutation p.G877V 0.30 deleterious_low_confidence(0) benign(0.063) TCGA-05-5428-01 1 23688970 23688970 C A ZNF436 Missense_Mutation p.G302V 0.54 deleterious(0) possibly_damaging(0.768) TCGA-05-5428-01 1 2419131 2419131 C T PLCH2 Silent p.I376I 0.34 TCGA-05-5428-01 1 247769413 247769413 C A OR2G3 Missense_Mutation p.H176N 0.37 tolerated(0.11) probably_damaging(1) TCGA-05-5428-01 1 248308469 248308469 C A OR2M5 Missense_Mutation p.T7N 0.34 tolerated(0.19) benign(0.049) TCGA-05-5428-01 1 248550931 248550931 T A OR2T6 Missense_Mutation p.L8M 0.34 tolerated(0.26) benign(0.007) TCGA-05-5428-01 1 248637272 248637272 C A OR2T3 Nonsense_Mutation p.C207* 0.38 TCGA-05-5428-01 1 248814013 248814013 G T OR2T27 Missense_Mutation p.P58H 0.23 deleterious(0) probably_damaging(1) TCGA-05-5428-01 1 26110248 26110248 G A MAN1C1 Missense_Mutation p.D621N 0.21 tolerated(0.53) benign(0.001) TCGA-05-5428-01 1 27609887 27609887 A C WDTC1 Missense_Mutation p.K80Q 0.41 deleterious(0.02) possibly_damaging(0.782) TCGA-05-5428-01 1 34180307 34180307 C T CSMD2 Missense_Mutation p.G1056S 0.23 tolerated(0.06) possibly_damaging(0.838) TCGA-05-5428-01 1 37356600 37356600 C T GRIK3 Silent p.R71R 0.21 TCGA-05-5428-01 1 39853098 39853098 C G MACF1 Missense_Mutation p.L2800V 0.23 benign(0.155) TCGA-05-5428-01 1 43825017 43825017 G T CDC20 Missense_Mutation p.R44L 0.41 tolerated(0.31) benign(0.018) TCGA-05-5428-01 1 57351623 57351623 C T C8A Silent p.F293F 0.09 TCGA-05-5428-01 1 65855119 65855119 G A DNAJC6 Silent p.T458T 0.19 TCGA-05-5428-01 1 66067113 66067113 G T LEPR Missense_Mutation p.G345W 0.39 deleterious(0) probably_damaging(0.999) TCGA-05-5428-01 1 67787401 67787401 C G IL12RB2 Missense_Mutation p.R65G 0.24 tolerated(0.28) benign(0.009) TCGA-05-5428-01 1 70503915 70503915 C A LRRC7 Missense_Mutation p.T765N 0.23 deleterious_low_confidence(0.03) benign(0.046) TCGA-05-5428-01 1 75009675 75009675 G A TNNI3K 3'UTR 0.22 TCGA-05-5428-01 1 75596466 75596466 C A LHX8 Intron 0.47 TCGA-05-5428-01 1 7912986 7912986 G A UTS2 Intron 0.19 TCGA-05-5428-01 1 9780180 9780180 C T PIK3CD Silent p.G450G 0.33 TCGA-05-5428-01 1 99156718 99156718 G C SNX7 Missense_Mutation p.A151P 0.31 deleterious(0.02) possibly_damaging(0.658) TCGA-05-5428-01 20 17446099 17446099 A G PCSK2 Missense_Mutation p.Y444C 0.36 deleterious(0) probably_damaging(0.99) TCGA-05-5428-01 20 30584765 30584765 C T XKR7 Silent p.L415L 0.19 TCGA-05-5428-01 20 44676138 44676138 C T SLC12A5 Silent p.F634F 0.06 TCGA-05-5428-01 20 51872733 51872733 G T TSHZ2 Silent p.G912G 0.20 TCGA-05-5428-01 20 52561526 52561526 G A BCAS1 Missense_Mutation p.R564W 0.15 deleterious(0) probably_damaging(0.999) TCGA-05-5428-01 20 54823834 54823834 G C MC3R 5'UTR 0.20 TCGA-05-5428-01 20 61461022 61461022 C A COL9A3 Missense_Mutation p.P366T 0.50 deleterious(0.01) probably_damaging(0.934) TCGA-05-5428-01 20 61461023 61461023 C A COL9A3 Missense_Mutation p.P366Q 0.56 deleterious(0) probably_damaging(0.989) TCGA-05-5428-01 20 61907553 61907553 G T ARFGAP1 Splice_Site p.X57_splice 0.49 TCGA-05-5428-01 20 62046380 62046380 G T KCNQ2 Silent p.P467P 0.62 TCGA-05-5428-01 20 7920967 7920967 C A HAO1 Nonsense_Mutation p.E35* 0.62 TCGA-05-5428-01 21 26966223 26966223 C G MRPL39 Missense_Mutation p.R250T 0.08 tolerated(0.16) possibly_damaging(0.738) TCGA-05-5428-01 21 30445969 30445969 G A CCT8 5'UTR 0.19 TCGA-05-5428-01 21 31986171 31986171 C A KRTAP6-1 Missense_Mutation p.C18F 0.24 unknown(0) TCGA-05-5428-01 21 32253335 32253335 C A KRTAP11-1 3'UTR 0.52 TCGA-05-5428-01 21 32526612 32526612 G T TIAM1 Missense_Mutation p.R1042S 0.40 deleterious(0.01) probably_damaging(0.976) TCGA-05-5428-01 21 34932301 34932301 G T SON Intron 0.47 TCGA-05-5428-01 21 41560998 41560998 C A DSCAM Missense_Mutation p.V842L 0.46 tolerated(0.34) benign(0.065) TCGA-05-5428-01 21 45710773 45710773 G C AIRE Intron 0.27 TCGA-05-5428-01 21 47648438 47648438 C G LSS Missense_Mutation p.E30D 0.13 tolerated(1) benign(0.001) TCGA-05-5428-01 22 17072901 17072901 C A CCT8L2 Missense_Mutation p.L180F 0.12 deleterious(0.02) probably_damaging(1) TCGA-05-5428-01 22 23135376 23135376 C A IGLV2-11 Missense_Mutation p.P80T 0.25 deleterious_low_confidence(0) possibly_damaging(0.754) TCGA-05-5428-01 22 23214060 23214060 G T IGLV4-3 Missense_Mutation p.G73C 0.17 deleterious(0) probably_damaging(0.994) TCGA-05-5428-01 22 23243366 23243366 A T IGLC2 Missense_Mutation p.Y71F 0.25 benign(0.374) TCGA-05-5428-01 22 47069627 47069627 G A GRAMD4 Missense_Mutation p.E434K 0.18 tolerated(0.18) benign(0.437) TCGA-05-5428-01 2 101622875 101622875 A T RPL31 Intron 0.16 TCGA-05-5428-01 2 108488020 108488020 G A RGPD4 Missense_Mutation p.R1187K 0.13 tolerated(0.19) benign(0.159) TCGA-05-5428-01 2 132010529 132010529 C A POTEE Missense_Mutation p.H545Q 0.33 tolerated_low_confidence(0.1) benign(0.353) TCGA-05-5428-01 2 155555206 155555206 C G KCNJ3 5'UTR 0.41 TCGA-05-5428-01 2 167262631 167262631 G C SCN7A Missense_Mutation p.S1503C 0.21 deleterious(0) possibly_damaging(0.885) TCGA-05-5428-01 2 168106534 168106534 G A XIRP2 Missense_Mutation p.E2878K 0.04 benign(0.031) TCGA-05-5428-01 2 185803401 185803401 C A ZNF804A Missense_Mutation p.T1093N 0.24 deleterious(0) probably_damaging(0.981) TCGA-05-5428-01 2 188245253 188245253 T A CALCRL Missense_Mutation p.S117C 0.51 deleterious(0) possibly_damaging(0.871) TCGA-05-5428-01 2 211512694 211512694 C A CPS1 Silent p.I1089I 0.42 TCGA-05-5428-01 2 217525440 217525440 G C IGFBP2 Missense_Mutation p.Q201H 0.18 deleterious(0.04) benign(0.037) TCGA-05-5428-01 2 219529494 219529494 C A RNF25 Nonsense_Mutation p.E257* 0.52 TCGA-05-5428-01 2 219614060 219614060 G T TTLL4 Missense_Mutation p.M895I 0.46 deleterious(0.05) possibly_damaging(0.549) TCGA-05-5428-01 2 219870197 219870197 C T CCDC108 Silent p.Q1670Q 0.22 TCGA-05-5428-01 2 220333758 220333758 C A SPEG Missense_Mutation p.A1160D 0.28 possibly_damaging(0.638) TCGA-05-5428-01 2 224462309 224462309 C T SCG2 Silent p.P564P 0.38 TCGA-05-5428-01 2 232389976 232389976 G T NMUR1 Silent p.P353P 0.16 TCGA-05-5428-01 2 241421603 241421603 C A ANKMY1 Missense_Mutation p.G872V 0.34 tolerated(0.29) benign(0.006) TCGA-05-5428-01 2 242142823 242142824 GC - ANO7 Frame_Shift_Del p.R322Lfs*134 0.30 TCGA-05-5428-01 2 242757466 242757466 C A NEU4 Missense_Mutation p.R196S 0.24 tolerated(0.4) possibly_damaging(0.89) TCGA-05-5428-01 2 27800697 27800697 C T C2orf16 Missense_Mutation p.P420S 0.48 tolerated(0.9) benign(0.132) TCGA-05-5428-01 2 29390370 29390370 G T CLIP4 Nonsense_Mutation p.E563* 0.24 TCGA-05-5428-01 2 29390371 29390371 A T CLIP4 Missense_Mutation p.E563V 0.24 deleterious(0) possibly_damaging(0.517) TCGA-05-5428-01 2 53999058 53999058 G A CHAC2 Silent p.V50V 0.12 TCGA-05-5428-01 2 60688324 60688324 G T BCL11A Missense_Mutation p.L575M 0.50 tolerated(0.26) possibly_damaging(0.608) TCGA-05-5428-01 2 61014693 61014693 T C PAPOLG Missense_Mutation p.V445A 0.20 tolerated(0.42) benign(0.006) TCGA-05-5428-01 2 65561824 65561824 C G SPRED2 Missense_Mutation p.R96S 0.04 tolerated(0.1) probably_damaging(0.922) TCGA-05-5428-01 2 68873233 68873233 C T PROKR1 Missense_Mutation p.R94C 0.20 deleterious(0) probably_damaging(1) TCGA-05-5428-01 2 6991699 6991699 C G CMPK2 Missense_Mutation p.D370H 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-05-5428-01 2 73492453 73492453 G T FBXO41 Silent p.P507P 0.34 TCGA-05-5428-01 2 79253889 79253889 G A REG3G Missense_Mutation p.G43S 0.49 deleterious(0.01) benign(0.193) TCGA-05-5428-01 2 79385454 79385454 G T REG3A Missense_Mutation p.Q111K 0.42 tolerated(1) benign(0.023) TCGA-05-5428-01 2 80085218 80085218 G - CTNNA2 Frame_Shift_Del p.A127Qfs*8 0.29 TCGA-05-5428-01 2 9666271 9666271 C T ADAM17 Missense_Mutation p.R241K 0.05 tolerated(0.25) possibly_damaging(0.577) TCGA-05-5428-01 2 97506548 97506548 T G ANKRD23 Silent p.G134G 0.17 TCGA-05-5428-01 3 115439809 115439809 C A GAP43 3'UTR 0.35 TCGA-05-5428-01 3 121200641 121200641 C A POLQ Missense_Mutation p.D1997Y 0.27 deleterious(0) probably_damaging(0.974) TCGA-05-5428-01 3 121207931 121207931 C A POLQ Nonsense_Mutation p.E1283* 0.29 TCGA-05-5428-01 3 122003967 122003967 G A CASR Missense_Mutation p.V1066M 0.31 tolerated_low_confidence(0.34) benign(0.004) TCGA-05-5428-01 3 124196146 124196146 C T KALRN Nonsense_Mutation p.Q1384* 0.32 TCGA-05-5428-01 3 124731608 124731608 G T HEG1 Missense_Mutation p.P939T 0.38 tolerated(0.12) benign(0.063) TCGA-05-5428-01 3 1269653 1269653 C T CNTN6 Missense_Mutation p.R112W 0.19 deleterious(0) probably_damaging(0.913) TCGA-05-5428-01 3 130095204 130095204 C T COL6A5 Silent p.A64A 0.17 TCGA-05-5428-01 3 132294687 132294687 C T ACAD11 Missense_Mutation p.E644K 0.15 deleterious(0) probably_damaging(0.994) TCGA-05-5428-01 3 134329079 134329079 C T KY Missense_Mutation p.G286D 0.29 deleterious(0) probably_damaging(1) TCGA-05-5428-01 3 145917794 145917794 C A PLSCR4 Missense_Mutation p.D144Y 0.17 deleterious(0) probably_damaging(0.995) TCGA-05-5428-01 3 150264620 150264620 G A EIF2A Intron 0.29 TCGA-05-5428-01 3 184648312 184648312 G A VPS8 Missense_Mutation p.E952K 0.15 tolerated(0.28) benign(0.009) TCGA-05-5428-01 3 188426208 188426208 G A LPP Intron 0.29 TCGA-05-5428-01 3 19436748 19436748 G T KCNH8 Missense_Mutation p.W374C 0.33 deleterious(0) probably_damaging(1) TCGA-05-5428-01 3 196733536 196733536 G A MFI2 Nonsense_Mutation p.R608* 0.47 TCGA-05-5428-01 3 20225228 20225228 C T SGOL1 Missense_Mutation p.E71K 0.14 deleterious(0) probably_damaging(0.997) TCGA-05-5428-01 3 3085352 3085352 G C CNTN4 Missense_Mutation p.K925N 0.17 deleterious(0.01) benign(0.104) TCGA-05-5428-01 3 36779860 36779860 C A DCLK3 Missense_Mutation p.R97S 0.38 deleterious(0) benign(0.218) TCGA-05-5428-01 3 37089041 37089041 T G MLH1 Missense_Mutation p.L588R 0.37 deleterious(0) probably_damaging(0.922) TCGA-05-5428-01 3 38950598 38950598 C G SCN11A Missense_Mutation p.A397P 0.33 deleterious(0) probably_damaging(1) TCGA-05-5428-01 3 42299711 42299711 C T CCK Missense_Mutation p.R76Q 0.18 deleterious(0.01) probably_damaging(0.935) TCGA-05-5428-01 3 46874472 46874472 C A PRSS42 Missense_Mutation p.R199M 0.45 deleterious(0.05) probably_damaging(0.927) TCGA-05-5428-01 3 47044777 47044777 G A NBEAL2 Missense_Mutation p.E1900K 0.09 deleterious(0.01) benign(0.102) TCGA-05-5428-01 3 48207330 48207330 A T CDC25A Silent p.S361S 0.38 TCGA-05-5428-01 3 53321515 53321515 C T DCP1A 3'UTR 0.14 TCGA-05-5428-01 3 65349172 65349172 C A MAGI1 Missense_Mutation p.D1155Y 0.40 deleterious(0) probably_damaging(0.992) TCGA-05-5428-01 3 98001900 98001900 G A OR5H2 Missense_Mutation p.D57N 0.31 deleterious(0.03) benign(0.018) TCGA-05-5428-01 4 100445681 100445681 C A C4orf17 Missense_Mutation p.P114H 0.27 deleterious(0) probably_damaging(0.999) TCGA-05-5428-01 4 103723778 103723778 T G UBE2D3 Missense_Mutation p.Q48H 0.49 deleterious_low_confidence(0.04) benign(0.011) TCGA-05-5428-01 4 123336679 123336679 G A ADAD1 Missense_Mutation p.M465I 0.19 tolerated(0.41) benign(0.001) TCGA-05-5428-01 4 134084251 134084251 C T PCDH10 Silent p.L973L 0.32 TCGA-05-5428-01 4 143352393 143352393 C A INPP4B Missense_Mutation p.G7V 0.24 tolerated_low_confidence(0.08) benign(0.347) TCGA-05-5428-01 4 164247106 164247106 G A NPY1R Nonsense_Mutation p.Q201* 0.35 TCGA-05-5428-01 4 164393186 164393186 G T TKTL2 Nonsense_Mutation p.Y567* 0.25 TCGA-05-5428-01 4 167021921 167021921 G T TLL1 Missense_Mutation p.D979Y 0.24 deleterious(0) probably_damaging(0.949) TCGA-05-5428-01 4 1730169 1730169 C T TACC3 Missense_Mutation p.T347I 0.24 deleterious(0.03) benign(0.133) TCGA-05-5428-01 4 17597048 17597048 C T LAP3 Silent p.I293I 0.24 TCGA-05-5428-01 4 2307056 2307056 G T ZFYVE28 Nonsense_Mutation p.Y337* 0.46 TCGA-05-5428-01 4 25013978 25013978 G A LGI2 Missense_Mutation p.R267W 0.24 deleterious(0.01) probably_damaging(0.939) TCGA-05-5428-01 4 47887581 47887581 C AA NFXL1 Frame_Shift_Ins p.L586Ffs*2 0.19 TCGA-05-5428-01 4 57221506 57221506 T A AASDH Missense_Mutation p.L315F 0.23 deleterious(0) probably_damaging(0.999) TCGA-05-5428-01 4 6066733 6066733 C A JAKMIP1 Missense_Mutation p.K435N 0.38 tolerated(0.08) benign(0.009) TCGA-05-5428-01 4 70080278 70080278 C G UGT2B11 Missense_Mutation p.V55L 0.28 deleterious(0) possibly_damaging(0.644) TCGA-05-5428-01 4 72332251 72332251 G T SLC4A4 Nonsense_Mutation p.G530* 0.16 TCGA-05-5428-01 4 8621162 8621162 C T CPZ Missense_Mutation p.H593Y 0.21 tolerated(1) benign(0.017) TCGA-05-5428-01 4 88996731 88996731 C T PKD2 Missense_Mutation p.T931M 0.48 deleterious(0.01) benign(0.188) TCGA-05-5428-01 4 89349840 89349840 G T HERC6 Missense_Mutation p.V682F 0.42 deleterious(0) possibly_damaging(0.86) TCGA-05-5428-01 5 112720857 112720857 C T MCC Missense_Mutation p.E75K 0.07 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-05-5428-01 5 114566676 114566676 G A PGGT1B Missense_Mutation p.H219Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-05-5428-01 5 115782751 115782751 C T SEMA6A Missense_Mutation p.R884Q 0.53 deleterious(0.03) probably_damaging(0.997) TCGA-05-5428-01 5 115782852 115782852 C A SEMA6A Silent p.L850L 0.51 TCGA-05-5428-01 5 118525409 118525409 C T DMXL1 Missense_Mutation p.S2381L 0.32 tolerated(0.06) benign(0.04) TCGA-05-5428-01 5 127613569 127613569 T C FBN2 Intron 0.70 TCGA-05-5428-01 5 13866016 13866016 C A DNAH5 Splice_Site p.X1373_splice 0.57 TCGA-05-5428-01 5 140503177 140503177 T A PCDHB4 Missense_Mutation p.S533T 0.60 tolerated_low_confidence(1) benign(0) TCGA-05-5428-01 5 140531513 140531513 G A PCDHB6 Missense_Mutation p.V559M 0.47 deleterious(0) probably_damaging(0.969) TCGA-05-5428-01 5 140552772 140552772 C T PCDHB7 Missense_Mutation p.A119V 0.35 tolerated_low_confidence(0.09) benign(0.002) TCGA-05-5428-01 5 140559034 140559034 C A PCDHB8 Missense_Mutation p.S473R 0.09 deleterious_low_confidence(0.03) benign(0.05) TCGA-05-5428-01 5 1443098 1443098 G A SLC6A3 Missense_Mutation p.S72F 0.11 deleterious(0) probably_damaging(0.998) TCGA-05-5428-01 5 14751287 14751287 G A ANKH Missense_Mutation p.P193L 0.07 deleterious(0) probably_damaging(0.999) TCGA-05-5428-01 5 148418026 148418026 C T SH3TC2 Missense_Mutation p.G278D 0.57 tolerated(1) benign(0.001) TCGA-05-5428-01 5 151777633 151777633 T G NMUR2 Missense_Mutation p.N267H 0.50 deleterious(0.01) benign(0.369) TCGA-05-5428-01 5 156186318 156186318 T A SGCD Missense_Mutation p.C264S 0.63 deleterious(0) probably_damaging(0.998) TCGA-05-5428-01 5 156915450 156915450 G T ADAM19 Silent p.P791P 0.44 TCGA-05-5428-01 5 161302569 161302569 G A GABRA1 Silent p.L160L 0.57 TCGA-05-5428-01 5 16465718 16465718 C A ZNF622 Missense_Mutation p.Q19H 0.55 deleterious(0) benign(0.047) TCGA-05-5428-01 5 167654946 167654946 G A TENM2 Silent p.R1777R 0.50 TCGA-05-5428-01 5 175394224 175394234 AGCTGGTCCAC - THOC3 Frame_Shift_Del p.V102Lfs*6 0.31 TCGA-05-5428-01 5 176832080 176832080 G A F12 Silent p.A168A 0.36 TCGA-05-5428-01 5 177571094 177571094 C T RMND5B Missense_Mutation p.R227W 0.09 deleterious(0.03) benign(0.246) TCGA-05-5428-01 5 19483608 19483608 C A CDH18 Missense_Mutation p.D562Y 0.18 deleterious(0.02) possibly_damaging(0.876) TCGA-05-5428-01 5 194966 194966 C A LRRC14B Missense_Mutation p.P348H 0.78 deleterious(0) probably_damaging(0.986) TCGA-05-5428-01 5 23522857 23522857 G T PRDM9 Missense_Mutation p.G249W 0.59 deleterious(0) possibly_damaging(0.546) TCGA-05-5428-01 5 24491686 24491686 C A CDH10 Silent p.L625L 0.18 TCGA-05-5428-01 5 33455797 33455797 G T TARS Silent p.L260L 0.57 TCGA-05-5428-01 5 33937116 33937116 G T RXFP3 Missense_Mutation p.V91L 0.64 tolerated(0.06) possibly_damaging(0.831) TCGA-05-5428-01 5 3600222 3600222 A G IRX1 Missense_Mutation p.N387S 0.16 tolerated(0.06) benign(0.099) TCGA-05-5428-01 5 39383364 39383364 C G DAB2 Missense_Mutation p.D233H 0.07 deleterious(0) probably_damaging(0.971) TCGA-05-5428-01 5 71491552 71491552 G T MAP1B Missense_Mutation p.K790N 0.67 unknown(0) TCGA-05-5428-01 5 78416224 78416224 G A BHMT Missense_Mutation p.E113K 0.26 tolerated(0.21) benign(0.069) TCGA-05-5428-01 5 9044623 9044623 G C SEMA5A Silent p.V989V 0.07 TCGA-05-5428-01 6 102266270 102266270 G T GRIK2 Missense_Mutation p.G410V 0.50 deleterious(0) probably_damaging(1) TCGA-05-5428-01 6 105526436 105526436 G T LIN28B Missense_Mutation p.Q177H 0.54 deleterious(0) probably_damaging(0.976) TCGA-05-5428-01 6 10906288 10906288 G C SYCP2L Splice_Site p.X226_splice 0.04 TCGA-05-5428-01 6 110424697 110424697 C A WASF1 Missense_Mutation p.Q259H 0.68 tolerated(0.12) unknown(0) TCGA-05-5428-01 6 14135350 14135350 G T CD83 Silent p.R167R 0.10 TCGA-05-5428-01 6 150240366 150240366 G A RAET1G Silent p.F148F 0.06 TCGA-05-5428-01 6 25777090 25777090 A T SLC17A4 Missense_Mutation p.S391C 0.07 deleterious(0) probably_damaging(0.989) TCGA-05-5428-01 6 27216634 27216634 G A PRSS16 Nonsense_Mutation p.W82* 0.69 TCGA-05-5428-01 6 27925077 27925077 G T OR2B6 Missense_Mutation p.R20L 0.49 tolerated(0.1) benign(0.01) TCGA-05-5428-01 6 30121975 30121975 C T TRIM10 Missense_Mutation p.R406K 0.53 tolerated(0.13) probably_damaging(0.996) TCGA-05-5428-01 6 32797239 32797239 C T TAP2 Missense_Mutation p.D624N 0.29 tolerated(0.47) benign(0.02) TCGA-05-5428-01 6 41121752 41121752 G A TREML1 Silent p.Y40Y 0.48 TCGA-05-5428-01 6 43304967 43304967 G C ZNF318 Missense_Mutation p.Q2257E 0.31 benign(0.009) TCGA-05-5428-01 6 46849193 46849193 G A GPR116 Silent p.I271I 0.15 TCGA-05-5428-01 6 52878687 52878687 C T ICK Missense_Mutation p.E309K 0.12 tolerated(0.46) benign(0.007) TCGA-05-5428-01 6 57011930 57011930 G C ZNF451 Missense_Mutation p.K349N 0.20 deleterious(0.02) probably_damaging(0.998) TCGA-05-5428-01 6 62757846 62757846 T A KHDRBS2 Silent p.L91L 0.12 TCGA-05-5428-01 6 66115113 66115113 G A EYS Missense_Mutation p.S337L 0.25 tolerated(0.27) possibly_damaging(0.765) TCGA-05-5428-01 6 7211137 7211137 C G RREB1 Missense_Mutation p.H176D 0.10 tolerated(0.15) benign(0.287) TCGA-05-5428-01 6 75799844 75799844 C A COL12A1 Nonsense_Mutation p.G2975* 0.24 TCGA-05-5428-01 6 87964599 87964599 G A ZNF292 Missense_Mutation p.D418N 0.26 deleterious(0) probably_damaging(0.987) TCGA-05-5428-01 6 89862832 89862832 G C PM20D2 Missense_Mutation p.D229H 0.69 deleterious(0) probably_damaging(1) TCGA-05-5428-01 6 90573971 90573971 A G CASP8AP2 RNA 0.52 TCGA-05-5428-01 7 100334234 100334234 G A ZAN Missense_Mutation p.G79R 0.42 probably_damaging(0.999) TCGA-05-5428-01 7 100349638 100349638 C T ZAN Missense_Mutation p.S637L 0.15 benign(0.309) TCGA-05-5428-01 7 100459433 100459433 G T SLC12A9 Silent p.L537L 0.10 TCGA-05-5428-01 7 101870761 101870761 A G CUX1 Missense_Mutation p.E1093G 0.39 deleterious(0) unknown(0) TCGA-05-5428-01 7 1027006 1027006 C T CYP2W1 Missense_Mutation p.R328C 0.54 deleterious(0.01) benign(0.082) TCGA-05-5428-01 7 102916010 102916010 C T DPY19L2P2 RNA 0.29 TCGA-05-5428-01 7 107732801 107732801 C T LAMB4 Missense_Mutation p.G511R 0.37 deleterious(0.03) probably_damaging(0.977) TCGA-05-5428-01 7 11415466 11415466 T A THSD7A Silent p.R1643R 0.36 TCGA-05-5428-01 7 11676463 11676463 T A THSD7A Missense_Mutation p.N106Y 0.28 deleterious(0.03) benign(0.212) TCGA-05-5428-01 7 121681017 121681017 G C PTPRZ1 Missense_Mutation p.V1929L 0.59 deleterious(0.05) benign(0.108) TCGA-05-5428-01 7 131831322 131831322 G - PLXNA4 Frame_Shift_Del p.R1668Gfs*11 0.43 TCGA-05-5428-01 7 135433360 135433360 C G FAM180A 5'UTR 0.04 TCGA-05-5428-01 7 140453155 140453155 C T BRAF Missense_Mutation p.D594N 0.34 deleterious(0) possibly_damaging(0.803) TCGA-05-5428-01 7 142247107 142247107 T G TRBV5-3 5'Flank 0.54 TCGA-05-5428-01 7 142565423 142565423 C G EPHB6 Missense_Mutation p.A603G 0.59 tolerated(0.9) benign(0.006) TCGA-05-5428-01 7 142565468 142565468 T G EPHB6 Missense_Mutation p.V618G 0.44 tolerated(0.14) benign(0.161) TCGA-05-5428-01 7 143047543 143047543 C A CLCN1 Missense_Mutation p.L828M 0.58 deleterious(0) probably_damaging(0.999) TCGA-05-5428-01 7 148979215 148979215 C T ZNF783 Silent p.A474A 0.22 TCGA-05-5428-01 7 149419891 149419891 A C KRBA1 Missense_Mutation p.S206R 0.16 deleterious(0) probably_damaging(0.975) TCGA-05-5428-01 7 150554886 150554886 C A AOC1 Missense_Mutation p.A443E 0.65 tolerated(0.05) possibly_damaging(0.546) TCGA-05-5428-01 7 19738102 19738102 T C TWISTNB Missense_Mutation p.Q285R 0.30 tolerated(0.33) benign(0.001) TCGA-05-5428-01 7 2279093 2279093 C T FTSJ2 Nonsense_Mutation p.W86* 0.36 TCGA-05-5428-01 7 27148281 27148282 GC - HOXA3 Frame_Shift_Del p.R195Hfs*37 0.31 TCGA-05-5428-01 7 2949749 2949749 G C CARD11 Missense_Mutation p.I1065M 0.41 deleterious(0) possibly_damaging(0.825) TCGA-05-5428-01 7 2984041 2984041 C G CARD11 Missense_Mutation p.K163N 0.08 deleterious(0.01) benign(0.305) TCGA-05-5428-01 7 34118549 34118549 C A BMPER Missense_Mutation p.Q387K 0.38 tolerated(0.5) benign(0.004) TCGA-05-5428-01 7 36561669 36561669 G T AOAH Silent p.P525P 0.32 TCGA-05-5428-01 7 43484721 43484721 G T HECW1 Silent p.T650T 0.36 TCGA-05-5428-01 7 50673020 50673020 C A GRB10 Missense_Mutation p.Q452H 0.42 tolerated(0.6) possibly_damaging(0.895) TCGA-05-5428-01 7 53103542 53103542 C A POM121L12 Missense_Mutation p.Q60K 0.35 tolerated(0.35) possibly_damaging(0.486) TCGA-05-5428-01 7 55863778 55863778 T A SEPT14 Missense_Mutation p.D376V 0.50 tolerated(0.22) benign(0.221) TCGA-05-5428-01 7 6502740 6502740 G A KDELR2 3'UTR 0.16 TCGA-05-5428-01 7 80427497 80427497 C A SEMA3C Missense_Mutation p.V348L 0.34 deleterious(0) benign(0.262) TCGA-05-5428-01 7 81346567 81346567 A T HGF Missense_Mutation p.D462E 0.29 deleterious(0) probably_damaging(0.999) TCGA-05-5428-01 7 83590774 83590774 G T SEMA3A Missense_Mutation p.N743K 0.37 tolerated(1) benign(0.021) TCGA-05-5428-01 7 83636694 83636694 C T SEMA3A Missense_Mutation p.R372K 0.11 tolerated(0.66) possibly_damaging(0.766) TCGA-05-5428-01 7 87011402 87011402 G T CROT Missense_Mutation p.V387L 0.30 tolerated(0.08) benign(0.046) TCGA-05-5428-01 8 110477365 110477365 G A PKHD1L1 Silent p.G2768G 0.61 TCGA-05-5428-01 8 114326822 114326822 G T CSMD3 Missense_Mutation p.H127N 0.10 tolerated(0.79) benign(0.109) TCGA-05-5428-01 8 121706015 121706015 G A SNTB1 Silent p.F235F 0.07 TCGA-05-5428-01 8 132051897 132051897 G A ADCY8 Missense_Mutation p.A228V 0.14 tolerated(1) benign(0.078) TCGA-05-5428-01 8 139824060 139824060 G T COL22A1 Silent p.S477S 0.08 TCGA-05-5428-01 8 1574992 1574992 C A DLGAP2 Missense_Mutation p.S430Y 0.62 deleterious(0) probably_damaging(0.95) TCGA-05-5428-01 8 25136098 25136098 G T DOCK5 Missense_Mutation p.V80L 0.48 deleterious(0.02) benign(0.019) TCGA-05-5428-01 8 36788633 36788633 C A KCNU1 Silent p.S967S 0.12 TCGA-05-5428-01 8 38369847 38369847 C A C8orf86 3'UTR 0.23 TCGA-05-5428-01 8 48839832 48839832 C A PRKDC Missense_Mutation p.D781Y 0.08 benign(0.041) TCGA-05-5428-01 8 52322075 52322075 G C PXDNL Missense_Mutation p.I703M 0.63 deleterious(0.04) probably_damaging(0.989) TCGA-05-5428-01 8 54792025 54792025 G T RGS20 Missense_Mutation p.G125C 0.70 deleterious_low_confidence(0) probably_damaging(1) TCGA-05-5428-01 8 74231418 74231418 G T RDH10 Missense_Mutation p.A205S 0.15 tolerated(0.75) possibly_damaging(0.615) TCGA-05-5428-01 8 95390564 95390564 C A RAD54B Missense_Mutation p.G787C 0.54 deleterious(0) probably_damaging(0.968) TCGA-05-5428-01 8 97312032 97312032 C T PTDSS1 Silent p.C237C 0.61 TCGA-05-5428-01 9 107361215 107361215 T G OR13C5 Silent p.T160T 0.27 TCGA-05-5428-01 9 108380278 108380278 G C FKTN Missense_Mutation p.D317H 0.21 deleterious(0) probably_damaging(1) TCGA-05-5428-01 9 120475528 120475528 C A TLR4 Missense_Mutation p.S374R 0.24 tolerated(0.08) benign(0.091) TCGA-05-5428-01 9 123007264 123007264 C A MIR147A RNA 0.31 TCGA-05-5428-01 9 125797349 125797349 G T GPR21 Missense_Mutation p.W168C 0.31 deleterious(0) probably_damaging(1) TCGA-05-5428-01 9 133945149 133945149 G C LAMC3 Missense_Mutation p.C994S 0.38 deleterious(0) probably_damaging(1) TCGA-05-5428-01 9 140400120 140400120 C A PNPLA7 Silent p.S473S 0.45 TCGA-05-5428-01 9 39361081 39361081 A T SPATA31A1 Missense_Mutation p.I1107F 0.43 deleterious(0.01) benign(0.074) TCGA-05-5428-01 9 446549 446549 C A DOCK8 Silent p.T1920T 0.25 TCGA-05-5428-01 9 65508190 65508190 G T SPATA31A7 Missense_Mutation p.P65T 0.20 tolerated(0.44) benign(0.006) TCGA-05-5428-01 9 71098793 71098793 G T PGM5 Missense_Mutation p.E436D 0.15 deleterious(0.03) benign(0.02) TCGA-05-5428-01 9 84607486 84607486 G T SPATA31D1 Missense_Mutation p.G701C 0.17 tolerated(0.12) probably_damaging(1) TCGA-05-5428-01 9 94486054 94486072 TGCTCTGGGCCCCATCTTC - ROR2 Frame_Shift_Del p.E902Pfs*82 0.20 TCGA-05-5428-01 9 95076672 95076672 C A NOL8 Silent p.S745S 0.29 TCGA-05-5428-01 9 96061494 96061494 G T WNK2 Silent p.S2059S 0.26 TCGA-05-5428-01 X 100117173 100117173 C T NOX1 Missense_Mutation p.G264E 0.53 deleterious(0) probably_damaging(0.931) TCGA-05-5428-01 X 107422489 107422489 G T COL4A6 Missense_Mutation p.H772N 0.43 benign(0.089) TCGA-05-5428-01 X 107422492 107422492 C T COL4A6 Missense_Mutation p.G771R 0.45 probably_damaging(1) TCGA-05-5428-01 X 111698292 111698292 C A ZCCHC16 Silent p.I112I 0.47 TCGA-05-5428-01 X 12939284 12939284 G T TLR8 Missense_Mutation p.D709Y 0.63 deleterious(0) benign(0.171) TCGA-05-5428-01 X 134426361 134426361 C A ZNF75D Missense_Mutation p.L150F 0.30 tolerated(0.09) benign(0.441) TCGA-05-5428-01 X 148770567 148770567 T G MAGEA11 5'UTR 0.39 TCGA-05-5428-01 X 150912097 150912097 G A CNGA2 Missense_Mutation p.M374I 0.31 deleterious(0.02) probably_damaging(0.985) TCGA-05-5428-01 X 151908930 151908930 C T CSAG1 Splice_Site p.X56_splice 0.30 TCGA-05-5428-01 X 16696555 16696555 G C CTPS2 Missense_Mutation p.L342V 0.20 deleterious(0) probably_damaging(0.997) TCGA-05-5428-01 X 29417357 29417357 G T IL1RAPL1 Missense_Mutation p.G212V 0.52 deleterious(0) probably_damaging(1) TCGA-05-5428-01 X 54020195 54020195 C T PHF8 Missense_Mutation p.G525S 0.66 tolerated(0.74) benign(0.001) TCGA-05-5428-01 X 73066916 73066916 C G XIST RNA 0.50 TCGA-05-5428-01 X 77301004 77301004 G A ATP7A Nonsense_Mutation p.W1387* 0.56 TCGA-05-5429-01 10 37430990 37430990 G T ANKRD30A Nonsense_Mutation p.E333* 0.31 TCGA-05-5429-01 10 87487669 87487669 G A GRID1 Silent p.Y492Y 0.31 TCGA-05-5429-01 10 87487760 87487760 C T GRID1 Missense_Mutation p.R462H 0.09 tolerated(0.18) possibly_damaging(0.577) TCGA-05-5429-01 11 34153690 34153690 T C NAT10 Silent p.D513D 0.14 TCGA-05-5429-01 11 34668230 34668230 C G EHF Missense_Mutation p.N136K 0.20 tolerated(0.47) probably_damaging(0.999) TCGA-05-5429-01 11 44297153 44297153 C A ALX4 Silent p.G174G 0.39 TCGA-05-5429-01 11 57480103 57480103 G C TMX2 Missense_Mutation p.A5P 0.22 deleterious_low_confidence(0.03) possibly_damaging(0.623) TCGA-05-5429-01 12 102569349 102569349 G A PARPBP Missense_Mutation p.E304K 0.38 deleterious(0.02) benign(0.191) TCGA-05-5429-01 12 52639248 52639248 C T KRT7 Missense_Mutation p.A346V 0.19 deleterious(0.03) benign(0.362) TCGA-05-5429-01 12 7526177 7526177 C G CD163L1 Missense_Mutation p.E1157Q 0.14 deleterious(0) probably_damaging(1) TCGA-05-5429-01 14 106320511 106320511 G A IGHM Silent p.T433T 0.10 TCGA-05-5429-01 14 95932465 95932465 G A SYNE3 Silent p.L144L 0.43 TCGA-05-5429-01 16 47549445 47549445 C T PHKB Missense_Mutation p.S176L 0.24 deleterious(0) possibly_damaging(0.697) TCGA-05-5429-01 16 81056432 81056432 G T CENPN Intron 0.06 TCGA-05-5429-01 17 56440903 56440904 - AT RNF43 Frame_Shift_Ins p.R145Hfs*14 0.11 TCGA-05-5429-01 17 74921106 74921106 G A MGAT5B Missense_Mutation p.D373N 0.20 tolerated(0.09) probably_damaging(0.927) TCGA-05-5429-01 18 48604655 48604655 G A SMAD4 Missense_Mutation p.D493N 0.36 deleterious(0) probably_damaging(0.978) TCGA-05-5429-01 19 1270962 1270962 T G CIRBP Silent p.V10V 0.08 TCGA-05-5429-01 19 38951104 38951104 G A RYR1 Missense_Mutation p.R817Q 0.25 benign(0.338) TCGA-05-5429-01 19 43358219 43358219 A C PSG10P RNA 0.21 TCGA-05-5429-01 19 52249869 52249869 C T FPR1 Missense_Mutation p.V127I 0.33 tolerated(0.05) possibly_damaging(0.858) TCGA-05-5429-01 1 196706690 196706690 G C CFH Silent p.G894G 0.44 TCGA-05-5429-01 1 248039632 248039632 C G TRIM58 Nonsense_Mutation p.Y434* 0.41 TCGA-05-5429-01 1 36932904 36932904 T C CSF3R Missense_Mutation p.N656S 0.45 tolerated(0.08) benign(0.373) TCGA-05-5429-01 1 6655560 6655561 - A KLHL21 Frame_Shift_Ins p.S497Vfs*29 0.36 TCGA-05-5429-01 20 30522516 30522516 C T TTLL9 Missense_Mutation p.R277C 0.24 tolerated(0.09) benign(0.015) TCGA-05-5429-01 20 5283319 5283319 G A PROKR2 Silent p.I174I 0.06 TCGA-05-5429-01 20 60889674 60889674 G A LAMA5 Silent p.G2768G 0.17 TCGA-05-5429-01 21 33073368 33073368 T C SCAF4 Silent p.T239T 0.23 TCGA-05-5429-01 22 38964290 38964290 C A DMC1 5'UTR 0.16 TCGA-05-5429-01 2 119752091 119752091 G A MARCO Missense_Mutation p.V520I 0.25 tolerated_low_confidence(0.84) unknown(0) TCGA-05-5429-01 2 1653369 1653369 C T PXDN Missense_Mutation p.R728H 0.06 tolerated(0.19) benign(0.035) TCGA-05-5429-01 2 191873763 191873763 G A STAT1 Nonsense_Mutation p.Q67* 0.28 TCGA-05-5429-01 2 238280738 238280738 G A COL6A3 Missense_Mutation p.R1308W 0.08 probably_damaging(0.987) TCGA-05-5429-01 2 69173459 69173459 T G GKN2 Missense_Mutation p.K150T 0.28 deleterious(0.01) possibly_damaging(0.841) TCGA-05-5429-01 3 132182659 132182662 TAGG - DNAJC13 Splice_Site p.X631_splice 0.14 TCGA-05-5429-01 3 56807778 56807778 C T ARHGEF3 Missense_Mutation p.V87M 0.22 deleterious(0.02) benign(0.433) TCGA-05-5429-01 4 110914495 110914495 C T EGF Missense_Mutation p.R943C 0.20 tolerated(0.06) benign(0.015) TCGA-05-5429-01 4 91549259 91549259 C A CCSER1 Missense_Mutation p.A603E 0.07 tolerated(0.36) benign(0.096) TCGA-05-5429-01 5 139751848 139751848 C T SLC4A9 Nonsense_Mutation p.R922* 0.36 TCGA-05-5429-01 5 140503027 140503027 G A PCDHB4 Missense_Mutation p.A483T 0.18 deleterious(0) probably_damaging(0.991) TCGA-05-5429-01 5 140723793 140723793 C T PCDHGA3 Missense_Mutation p.R65C 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-05-5429-01 7 114282647 114282647 C A FOXP2 Missense_Mutation p.Q345K 0.09 deleterious(0.03) unknown(0) TCGA-05-5429-01 7 123594255 123594255 C T SPAM1 Missense_Mutation p.R211W 0.09 deleterious(0) probably_damaging(1) TCGA-05-5429-01 8 22058878 22058878 C T BMP1 Intron 0.35 TCGA-05-5429-01 9 130027251 130027251 G A GARNL3 Missense_Mutation p.G32D 0.14 tolerated(0.07) probably_damaging(0.995) TCGA-05-5429-01 X 50659038 50659038 C T BMP15 Nonsense_Mutation p.R204* 0.39 TCGA-05-5715-01 10 123670659 123670659 G A ATE1 Silent p.P115P 0.58 TCGA-05-5715-01 10 7759700 7759700 C A ITIH2 Silent p.S193S 0.05 TCGA-05-5715-01 10 7860740 7860740 G T TAF3 Missense_Mutation p.W23L 0.78 deleterious(0) possibly_damaging(0.888) TCGA-05-5715-01 10 88213467 88213467 C G WAPAL Missense_Mutation p.E927Q 0.49 tolerated(0.08) benign(0.212) TCGA-05-5715-01 10 88677025 88677025 C T BMPR1A Silent p.S270S 0.42 TCGA-05-5715-01 11 118363894 118363894 A - KMT2A Frame_Shift_Del p.D1710Ifs*2 0.30 TCGA-05-5715-01 11 120298837 120298837 C T ARHGEF12 Missense_Mutation p.L156F 0.33 deleterious(0) probably_damaging(0.994) TCGA-05-5715-01 11 124619682 124619682 C T VSIG2 Missense_Mutation p.E170K 0.23 tolerated(0.56) benign(0.016) TCGA-05-5715-01 11 26725075 26725076 - A SLC5A12 Intron 0.26 TCGA-05-5715-01 11 47431696 47431696 C G SLC39A13 Silent p.L17L 0.28 TCGA-05-5715-01 11 48346598 48346598 G C OR4C3 Missense_Mutation p.E36Q 0.24 deleterious(0.01) possibly_damaging(0.882) TCGA-05-5715-01 11 5536678 5536678 T G UBQLNL Missense_Mutation p.I332L 0.33 tolerated(0.12) benign(0.262) TCGA-05-5715-01 11 59224646 59224646 C T OR4D6 Silent p.I71I 0.24 TCGA-05-5715-01 11 62435266 62435266 C G METTL12 3'UTR 0.48 TCGA-05-5715-01 11 85626533 85626533 C T CCDC83 Missense_Mutation p.T320I 0.26 tolerated(0.43) benign(0.013) TCGA-05-5715-01 11 9861153 9861153 C G SBF2 Missense_Mutation p.R1116T 0.04 deleterious(0) possibly_damaging(0.821) TCGA-05-5715-01 12 129558864 129558864 G C TMEM132D Missense_Mutation p.F952L 0.35 tolerated(0.9) benign(0.001) TCGA-05-5715-01 12 41967475 41967475 G A PDZRN4 Missense_Mutation p.R965Q 0.27 tolerated(1) probably_damaging(0.996) TCGA-05-5715-01 12 44124206 44124206 C T PUS7L Silent p.L693L 0.29 TCGA-05-5715-01 12 56398128 56398128 G C SUOX Missense_Mutation p.E319Q 0.44 deleterious(0) benign(0.336) TCGA-05-5715-01 12 67699360 67699360 T C CAND1 Missense_Mutation p.S638P 0.26 deleterious(0) probably_damaging(0.987) TCGA-05-5715-01 12 7188187 7188187 C G C1R Missense_Mutation p.L537F 0.26 tolerated(0.69) benign(0.016) TCGA-05-5715-01 12 89743067 89743067 C G DUSP6 Missense_Mutation p.Q370H 0.33 tolerated_low_confidence(1) benign(0) TCGA-05-5715-01 14 20216038 20216038 G A OR4Q3 Missense_Mutation p.C151Y 0.22 deleterious(0.05) benign(0.239) TCGA-05-5715-01 14 20502887 20502887 C T OR4K13 Missense_Mutation p.E11K 0.20 deleterious(0.01) benign(0.176) TCGA-05-5715-01 14 35739633 35739633 A G KIAA0391 Missense_Mutation p.Y484C 0.27 deleterious(0) probably_damaging(0.993) TCGA-05-5715-01 14 36988447 36988447 G A NKX2-1 Missense_Mutation p.A69V 0.25 tolerated(0.09) benign(0.254) TCGA-05-5715-01 14 58599890 58599890 C A C14orf37 Silent p.L513L 0.27 TCGA-05-5715-01 14 67807182 67807182 C T ATP6V1D Missense_Mutation p.E193K 0.33 deleterious(0) probably_damaging(0.998) TCGA-05-5715-01 14 72139160 72139160 G A SIPA1L1 Silent p.A975A 0.42 TCGA-05-5715-01 14 96858464 96858464 C T AK7 5'UTR 0.36 TCGA-05-5715-01 14 99927677 99927677 C A SETD3 Missense_Mutation p.G66V 0.21 tolerated(0.16) probably_damaging(0.98) TCGA-05-5715-01 15 24924444 24924444 G C NPAP1 Missense_Mutation p.E1144Q 0.31 tolerated_low_confidence(0.47) benign(0.003) TCGA-05-5715-01 15 25958906 25958906 G A ATP10A Silent p.I753I 0.20 TCGA-05-5715-01 15 27182355 27182355 G A GABRA5 Missense_Mutation p.V202I 0.33 tolerated(0.88) benign(0.021) TCGA-05-5715-01 15 30930957 30930957 A T ARHGAP11B 3'UTR 0.19 TCGA-05-5715-01 15 41961679 41961679 C G MGA Missense_Mutation p.S196C 0.35 deleterious(0) probably_damaging(1) TCGA-05-5715-01 15 42040834 42040834 G A MGA Splice_Site p.X1738_splice 0.31 TCGA-05-5715-01 15 59064389 59064389 C T FAM63B Silent p.P265P 0.31 TCGA-05-5715-01 15 59323235 59323235 C G RNF111 Missense_Mutation p.Q72E 0.38 deleterious_low_confidence(0.05) benign(0.043) TCGA-05-5715-01 16 30770954 30770954 G C C16orf93 Intron 0.21 TCGA-05-5715-01 16 55905608 55905608 C T CES5A Missense_Mutation p.G145R 0.32 tolerated(0.46) benign(0.016) TCGA-05-5715-01 16 56436943 56436943 G A AMFR Missense_Mutation p.R310C 0.33 deleterious(0) possibly_damaging(0.618) TCGA-05-5715-01 16 70284909 70284909 C A EXOSC6 3'UTR 0.15 TCGA-05-5715-01 16 777579 777579 G A HAGHL Missense_Mutation p.E24K 0.19 tolerated(0.11) benign(0.286) TCGA-05-5715-01 16 88872241 88872241 G C CDT1 Missense_Mutation p.D266H 0.40 deleterious(0) probably_damaging(0.951) TCGA-05-5715-01 17 27613864 27613864 G C NUFIP2 Missense_Mutation p.S383C 0.03 tolerated_low_confidence(0.15) probably_damaging(0.995) TCGA-05-5715-01 17 29664477 29664477 T G NF1 Silent p.A2173A 0.19 TCGA-05-5715-01 17 30781559 30781559 C G PSMD11 Missense_Mutation p.I80M 0.25 deleterious(0.04) benign(0.037) TCGA-05-5715-01 17 36486375 36486375 C T GPR179 Missense_Mutation p.R1026Q 0.22 tolerated(0.07) possibly_damaging(0.9) TCGA-05-5715-01 17 37880981 37880982 - GCATACGTGATG ERBB2 In_Frame_Ins p.Y772_A775dup 0.19 TCGA-05-5715-01 17 40729545 40729545 C G PSMC3IP Missense_Mutation p.Q23H 0.30 deleterious(0) probably_damaging(0.995) TCGA-05-5715-01 17 42248104 42248104 C T ASB16 5'UTR 0.25 TCGA-05-5715-01 17 60655841 60655841 G A TLK2 Missense_Mutation p.E398K 0.17 deleterious(0.01) probably_damaging(0.976) TCGA-05-5715-01 17 8192632 8192661 CTGTTCAGCCTCTCAGTTTGGAGAACCTGG - RANGRF In_Frame_Del p.V85_A94del 0.33 TCGA-05-5715-01 18 28602410 28602410 C T DSC3 Silent p.T278T 0.07 TCGA-05-5715-01 18 48584552 48584552 C G SMAD4 Nonsense_Mutation p.S242* 0.65 TCGA-05-5715-01 19 1785556 1785556 C T ATP8B3 Missense_Mutation p.R1102H 0.41 tolerated(0.71) benign(0.001) TCGA-05-5715-01 19 3381997 3381997 C G NFIC Silent p.L106L 0.44 TCGA-05-5715-01 19 44980651 44980651 G C ZNF180 Missense_Mutation p.H683D 0.31 deleterious(0) probably_damaging(0.995) TCGA-05-5715-01 19 49464213 49464213 C G BAX Silent p.L172L 0.39 TCGA-05-5715-01 19 49469553 49469553 G C FTL Missense_Mutation p.E89Q 0.31 deleterious(0.01) possibly_damaging(0.696) TCGA-05-5715-01 19 49469609 49469609 G T FTL Silent p.L107L 0.37 TCGA-05-5715-01 19 50926966 50926966 G A SPIB Silent p.S148S 0.19 TCGA-05-5715-01 19 52658555 52658555 G A ZNF836 Missense_Mutation p.A794V 0.38 tolerated(0.41) benign(0.001) TCGA-05-5715-01 19 54225506 54225506 G T MIR520G RNA 0.32 TCGA-05-5715-01 19 59028392 59028392 C T ZBTB45 Missense_Mutation p.E217K 0.03 tolerated(0.43) benign(0.129) TCGA-05-5715-01 19 6707234 6707234 C G C3 Missense_Mutation p.E700Q 0.36 deleterious(0.04) benign(0.41) TCGA-05-5715-01 1 109358674 109358674 C T AKNAD1 3'UTR 0.31 TCGA-05-5715-01 1 109358772 109358772 C G AKNAD1 3'UTR 0.46 TCGA-05-5715-01 1 109358811 109358811 C G AKNAD1 Missense_Mutation p.R831S 0.40 deleterious(0) probably_damaging(0.98) TCGA-05-5715-01 1 11008388 11008388 C T C1orf127 Missense_Mutation p.E602K 0.32 tolerated(0.15) benign(0.156) TCGA-05-5715-01 1 150789333 150789333 G - ARNT Frame_Shift_Del p.P578Lfs*28 0.28 TCGA-05-5715-01 1 152285020 152285020 T C FLG Missense_Mutation p.D781G 0.22 benign(0.005) TCGA-05-5715-01 1 154543728 154543728 C T CHRNB2 Silent p.I143I 0.20 TCGA-05-5715-01 1 170003513 170003513 C G KIFAP3 Missense_Mutation p.V248L 0.21 tolerated(0.67) benign(0.001) TCGA-05-5715-01 1 172633495 172633495 A - FASLG Frame_Shift_Del p.K141Rfs*3 0.24 TCGA-05-5715-01 1 177133601 177133601 C A ASTN1 Missense_Mutation p.R71L 0.39 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-05-5715-01 1 180166487 180166487 C T QSOX1 3'UTR 0.25 TCGA-05-5715-01 1 182026921 182026921 G T ZNF648 Silent p.G75G 0.27 TCGA-05-5715-01 1 182555637 182555637 G A RNASEL Missense_Mutation p.A102V 0.17 tolerated(0.75) benign(0.002) TCGA-05-5715-01 1 182571203 182571203 C T RGS16 Nonsense_Mutation p.W95* 0.26 TCGA-05-5715-01 1 186023068 186023068 C T HMCN1 Missense_Mutation p.A2271V 0.17 possibly_damaging(0.716) TCGA-05-5715-01 1 197036345 197036345 C T F13B Silent p.L3L 0.16 TCGA-05-5715-01 1 197411420 197411420 G A CRB1 Missense_Mutation p.D1335N 0.46 deleterious(0.02) possibly_damaging(0.616) TCGA-05-5715-01 1 201868453 201868453 C G LMOD1 Missense_Mutation p.G563A 0.50 benign(0.033) TCGA-05-5715-01 1 212792564 212792564 C T ATF3 Intron 0.18 TCGA-05-5715-01 1 214788288 214788288 C G CENPF Silent p.V92V 0.22 TCGA-05-5715-01 1 22166366 22166366 C T HSPG2 Missense_Mutation p.E3220K 0.31 possibly_damaging(0.739) TCGA-05-5715-01 1 241767856 241767856 G A OPN3 Silent p.T133T 0.18 TCGA-05-5715-01 1 27088651 27088651 C T ARID1A Nonsense_Mutation p.Q754* 0.05 TCGA-05-5715-01 1 43826219 43826219 C T CDC20 Missense_Mutation p.S268F 0.39 deleterious(0) benign(0.059) TCGA-05-5715-01 1 54497767 54497767 C G TMEM59 3'UTR 0.17 TCGA-05-5715-01 20 25263896 25263896 G A PYGB Missense_Mutation p.V535M 0.50 tolerated(0.13) benign(0.427) TCGA-05-5715-01 20 42984468 42984468 C T R3HDML 3'Flank 0.68 TCGA-05-5715-01 20 61596969 61596969 G T SLC17A9 Missense_Mutation p.G318V 0.27 deleterious(0) probably_damaging(0.983) TCGA-05-5715-01 20 62168655 62168655 C A PTK6 Missense_Mutation p.D5Y 0.69 deleterious(0.02) possibly_damaging(0.459) TCGA-05-5715-01 21 32185280 32185280 G A KRTAP8-1 3'UTR 0.23 TCGA-05-5715-01 21 34649001 34649001 G A IL10RB Missense_Mutation p.E92K 0.37 deleterious(0) probably_damaging(0.991) TCGA-05-5715-01 22 29668239 29668239 G A EWSR1 Silent p.Q16Q 0.38 TCGA-05-5715-01 22 38274173 38274173 G A EIF3L Missense_Mutation p.D524N 0.35 tolerated(0.07) possibly_damaging(0.859) TCGA-05-5715-01 2 105859054 105859054 C T GPR45 Missense_Mutation p.R247W 0.35 tolerated(0.06) possibly_damaging(0.846) TCGA-05-5715-01 2 145161555 145161555 G C ZEB2 Silent p.L245L 0.32 TCGA-05-5715-01 2 163134108 163134108 C G IFIH1 Missense_Mutation p.D621H 0.35 deleterious(0) possibly_damaging(0.637) TCGA-05-5715-01 2 165584560 165584560 G A COBLL1 Nonsense_Mutation p.Q194* 0.39 TCGA-05-5715-01 2 180014079 180014079 C T SESTD1 Missense_Mutation p.E176K 0.32 deleterious(0.01) benign(0.121) TCGA-05-5715-01 2 217012854 217012854 C T XRCC5 Nonsense_Mutation p.Q509* 0.35 TCGA-05-5715-01 2 231135347 231135347 G A SP140 Silent p.R497R 0.18 TCGA-05-5715-01 2 55439826 55439826 G C CLHC1 Missense_Mutation p.P161R 0.26 deleterious(0.01) possibly_damaging(0.781) TCGA-05-5715-01 2 63280140 63280140 C T OTX1 Silent p.L5L 0.16 TCGA-05-5715-01 2 71901354 71901354 G A DYSF Missense_Mutation p.E1938K 0.40 deleterious(0.03) probably_damaging(0.966) TCGA-05-5715-01 2 80101245 80101245 G A CTNNA2 Missense_Mutation p.R210Q 0.25 deleterious(0) probably_damaging(1) TCGA-05-5715-01 3 101571949 101571950 - C NFKBIZ Frame_Shift_Ins p.T195Nfs*13 0.42 TCGA-05-5715-01 3 121591540 121591540 C A EAF2 Nonsense_Mutation p.S214* 0.05 TCGA-05-5715-01 3 133647206 133647206 C A C3orf36 Missense_Mutation p.V148L 0.14 tolerated_low_confidence(0.33) benign(0.198) TCGA-05-5715-01 3 170216672 170216672 C A SLC7A14 Silent p.G181G 0.50 TCGA-05-5715-01 3 196199040 196199040 C G RNF168 Missense_Mutation p.E456Q 0.55 tolerated(0.47) benign(0.259) TCGA-05-5715-01 3 19940970 19940970 C A EFHB Missense_Mutation p.D486Y 0.61 deleterious(0) possibly_damaging(0.882) TCGA-05-5715-01 3 38938482 38938482 C A SCN11A Missense_Mutation p.D753Y 0.52 deleterious(0) probably_damaging(0.995) TCGA-05-5715-01 3 39159580 39159580 G A TTC21A Missense_Mutation p.S246N 0.60 tolerated(0.97) benign(0.003) TCGA-05-5715-01 3 39307728 39307728 C T CX3CR1 Silent p.L123L 0.36 TCGA-05-5715-01 3 48956243 48956243 C G ARIH2OS Missense_Mutation p.D114H 0.62 deleterious_low_confidence(0.05) probably_damaging(0.934) TCGA-05-5715-01 4 109784503 109784503 C T COL25A1 Missense_Mutation p.R375Q 0.36 tolerated(0.07) probably_damaging(0.997) TCGA-05-5715-01 4 1389587 1389587 C T CRIPAK Missense_Mutation p.R430C 0.13 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-05-5715-01 4 174253151 174253151 G A HMGB2 3'UTR 0.31 TCGA-05-5715-01 4 26675489 26675489 G C TBC1D19 Missense_Mutation p.L265F 0.23 deleterious(0) possibly_damaging(0.886) TCGA-05-5715-01 4 3156082 3156082 G A HTT Silent p.E1187E 0.29 TCGA-05-5715-01 4 53728649 53728649 C G RASL11B 5'UTR 0.38 TCGA-05-5715-01 4 6580191 6580191 G C MAN2B2 Silent p.V119V 0.27 TCGA-05-5715-01 5 1394836 1394836 C T SLC6A3 3'UTR 0.04 TCGA-05-5715-01 5 150311305 150311305 C G ZNF300P1 RNA 0.33 TCGA-05-5715-01 6 146351273 146351273 C G GRM1 Missense_Mutation p.S207C 0.23 deleterious(0) probably_damaging(0.987) TCGA-05-5715-01 6 151089832 151089832 C T PLEKHG1 Missense_Mutation p.S157L 0.12 tolerated(0.08) benign(0.022) TCGA-05-5715-01 6 26123793 26123793 C G HIST1H2BC Missense_Mutation p.E114Q 0.27 deleterious_low_confidence(0.02) benign(0.113) TCGA-05-5715-01 6 41118012 41118012 C G TREML1 Missense_Mutation p.R203T 0.36 tolerated(0.42) benign(0.295) TCGA-05-5715-01 6 7581355 7581355 G A DSP Silent p.L1644L 0.68 TCGA-05-5715-01 7 100457570 100457570 G C SLC12A9 Missense_Mutation p.L347F 0.31 tolerated(0.05) benign(0.261) TCGA-05-5715-01 7 143633081 143633081 C T OR2F2 Silent p.Y252Y 0.35 TCGA-05-5715-01 7 27134880 27134880 C A HOXA1 Missense_Mutation p.G218W 0.34 deleterious(0) probably_damaging(0.98) TCGA-05-5715-01 7 51096213 51096213 C G COBL Missense_Mutation p.Q860H 0.45 tolerated(0.43) benign(0.055) TCGA-05-5715-01 7 51096593 51096593 C T COBL Missense_Mutation p.D734N 0.32 deleterious(0.03) probably_damaging(1) TCGA-05-5715-01 7 92763767 92763767 G A SAMD9L Silent p.S506S 0.34 TCGA-05-5715-01 8 143958264 143958264 C G CYP11B1 Silent p.L211L 0.39 TCGA-05-5715-01 8 21890671 21890671 C T NPM2 Missense_Mutation p.P101S 0.13 deleterious(0.03) possibly_damaging(0.558) TCGA-05-5715-01 8 22019333 22019333 T A SFTPC 5'UTR 0.28 TCGA-05-5715-01 8 95406084 95406084 C G RAD54B Missense_Mutation p.E469Q 0.34 deleterious(0) probably_damaging(0.997) TCGA-05-5715-01 9 13126722 13126722 C G MPDZ Missense_Mutation p.G1505A 0.23 tolerated(0.06) probably_damaging(0.974) TCGA-05-5715-01 9 86279969 86279970 - T UBQLN1 Frame_Shift_Ins p.T475Nfs*27 0.50 TCGA-05-5715-01 X 105167115 105167115 A T NRK Silent p.P873P 0.35 TCGA-05-5715-01 X 117788871 117788871 C T DOCK11 Missense_Mutation p.A1639V 0.35 deleterious(0) probably_damaging(0.997) TCGA-05-5715-01 X 135115594 135115594 A G SLC9A6 Missense_Mutation p.R557G 0.36 tolerated(0.16) benign(0.109) TCGA-05-5715-01 X 149944650 149944650 G A CD99L2 Nonsense_Mutation p.Q218* 0.31 TCGA-05-5715-01 X 151303180 151303180 C T MAGEA10 Missense_Mutation p.E305K 0.04 deleterious(0) probably_damaging(0.998) TCGA-05-5715-01 X 31279101 31279101 G T DMD Missense_Mutation p.P3086H 0.39 probably_damaging(0.971) TCGA-05-5715-01 X 32536068 32536068 C T DMD Intron 0.11 TCGA-05-5715-01 X 48681322 48681322 A G HDAC6 Missense_Mutation p.K838R 0.10 tolerated(0.2) benign(0.007) TCGA-05-5715-01 X 54950106 54950106 C G TRO Missense_Mutation p.Q381E 0.27 deleterious(0.03) unknown(0) TCGA-05-5715-01 X 57935303 57935303 A T ZXDA Missense_Mutation p.C518S 0.38 tolerated(0.32) benign(0.37) TCGA-05-5715-01 X 73069127 73069127 G C XIST RNA 0.21 TCGA-35-3615-01 10 104594740 104594740 C A CYP17A1 Missense_Mutation p.M156I 0.24 tolerated(0.41) benign(0.02) TCGA-35-3615-01 10 15902236 15902236 G A FAM188A Silent p.L21L 0.15 TCGA-35-3615-01 10 37430689 37430689 G T ANKRD30A Silent p.A232A 0.22 TCGA-35-3615-01 10 45429161 45429161 T A TMEM72 Missense_Mutation p.Y96N 0.21 deleterious(0) probably_damaging(1) TCGA-35-3615-01 10 55996691 55996691 C A PCDH15 Nonsense_Mutation p.E293* 0.29 TCGA-35-3615-01 10 61844435 61844435 C T ANK3 Missense_Mutation p.M1333I 0.05 possibly_damaging(0.495) TCGA-35-3615-01 10 82126540 82126540 C G DYDC2 Missense_Mutation p.P137A 0.27 deleterious(0.01) probably_damaging(0.913) TCGA-35-3615-01 11 110007729 110007729 C T ZC3H12C Silent p.C121C 0.27 TCGA-35-3615-01 11 119024780 119024780 C A ABCG4 Silent p.R95R 0.27 TCGA-35-3615-01 11 123894107 123894107 A T OR10G9 Missense_Mutation p.R130W 0.34 deleterious(0.01) probably_damaging(0.952) TCGA-35-3615-01 11 3041474 3041474 C A CARS Silent p.P414P 0.21 TCGA-35-3615-01 11 4615507 4615507 C T OR52I1 Missense_Mutation p.S80F 0.27 deleterious(0) possibly_damaging(0.883) TCGA-35-3615-01 11 5776193 5776193 A T OR52N4 Missense_Mutation p.M75L 0.35 tolerated(1) benign(0.002) TCGA-35-3615-01 11 58170746 58170746 A T OR5B3 Nonsense_Mutation p.L46* 0.31 TCGA-35-3615-01 11 65268293 65268296 TTTA - MALAT1 RNA 0.14 TCGA-35-3615-01 11 67353976 67353977 - CC GSTP1 Frame_Shift_Ins p.K189Pfs*13 0.29 TCGA-35-3615-01 11 7064233 7064233 G C NLRP14 Missense_Mutation p.E326Q 0.19 tolerated(0.24) benign(0.063) TCGA-35-3615-01 11 96124962 96124962 A C JRKL Missense_Mutation p.R383S 0.04 deleterious(0.03) benign(0.237) TCGA-35-3615-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.24 deleterious(0.04) probably_damaging(0.993) TCGA-35-3615-01 12 43777759 43777759 C T ADAMTS20 Missense_Mutation p.G1492R 0.29 deleterious(0.01) possibly_damaging(0.767) TCGA-35-3615-01 12 46244361 46244361 C T ARID2 Nonsense_Mutation p.Q819* 0.38 TCGA-35-3615-01 12 54109766 54109766 C T CALCOCO1 Silent p.Q357Q 0.50 TCGA-35-3615-01 12 54789949 54789949 C G ITGA5 3'UTR 0.36 TCGA-35-3615-01 12 57178691 57178691 C G HSD17B6 Missense_Mutation p.F209L 0.33 deleterious(0) benign(0.32) TCGA-35-3615-01 12 66152248 66152248 C A RPSAP52 RNA 0.21 TCGA-35-3615-01 13 109777480 109777480 C A MYO16 Missense_Mutation p.R1164S 0.20 deleterious(0.04) probably_damaging(1) TCGA-35-3615-01 13 114107634 114107634 G A ADPRHL1 Missense_Mutation p.S40F 0.17 tolerated(0.1) benign(0.005) TCGA-35-3615-01 13 24444289 24444289 T C MIPEP Missense_Mutation p.S217G 0.33 tolerated(0.25) benign(0.008) TCGA-35-3615-01 13 26129181 26129181 C A ATP8A2 Nonsense_Mutation p.S413* 0.33 TCGA-35-3615-01 13 42876365 42876365 G T AKAP11 Missense_Mutation p.E1161D 0.30 tolerated(0.12) probably_damaging(0.999) TCGA-35-3615-01 13 67799512 67799512 T C PCDH9 Intron 0.37 TCGA-35-3615-01 13 95114416 95114416 G T DCT Silent p.T297T 0.16 TCGA-35-3615-01 14 104642378 104642378 G T KIF26A Missense_Mutation p.A1085S 0.28 tolerated(0.09) probably_damaging(0.995) TCGA-35-3615-01 15 25422019 25422019 G A SNORD115-4 RNA 0.22 TCGA-35-3615-01 15 25652310 25652310 A G UBE3A Intron 0.28 TCGA-35-3615-01 15 35274098 35274098 C T ZNF770 Missense_Mutation p.R513K 0.27 deleterious(0) probably_damaging(0.994) TCGA-35-3615-01 15 35274816 35274816 C T ZNF770 Missense_Mutation p.E274K 0.16 tolerated(0.18) benign(0.035) TCGA-35-3615-01 15 40917230 40917230 G T CASC5 Nonsense_Mutation p.G1616* 0.19 TCGA-35-3615-01 15 40917231 40917231 G T CASC5 Missense_Mutation p.G1616V 0.19 tolerated(0.3) benign(0.013) TCGA-35-3615-01 15 44865727 44865727 C A SPG11 Intron 0.24 TCGA-35-3615-01 15 51032016 51032016 C T SPPL2A Silent p.L198L 0.22 TCGA-35-3615-01 15 63044512 63044512 T - TLN2 Frame_Shift_Del p.E1407Nfs*32 0.14 TCGA-35-3615-01 15 83932641 83932641 G A BNC1 Silent p.P454P 0.27 TCGA-35-3615-01 16 17202725 17202725 C G XYLT1 Missense_Mutation p.E903Q 0.20 tolerated(0.08) possibly_damaging(0.597) TCGA-35-3615-01 16 20548519 20548519 G T ACSM2B 3'UTR 0.33 TCGA-35-3615-01 16 2293439 2293439 C T ECI1 Missense_Mutation p.G148E 0.20 deleterious(0) probably_damaging(1) TCGA-35-3615-01 16 29997963 29997963 C T TAOK2 Silent p.G790G 0.28 TCGA-35-3615-01 16 3544576 3544576 G A C16orf90 Silent p.L116L 0.25 TCGA-35-3615-01 16 51173710 51173710 G T SALL1 Missense_Mutation p.S808Y 0.25 tolerated(0.08) probably_damaging(0.947) TCGA-35-3615-01 16 85838571 85838571 G A COX4I1 Silent p.S34S 0.35 TCGA-35-3615-01 17 33749265 33749265 T A SLFN12 Missense_Mutation p.E261D 0.29 tolerated(0.33) benign(0.038) TCGA-35-3615-01 17 37564758 37564758 G A MED1 Missense_Mutation p.S1239L 0.31 deleterious_low_confidence(0) unknown(0) TCGA-35-3615-01 17 38991095 38991095 C T TMEM99 Silent p.F109F 0.32 TCGA-35-3615-01 17 534814 534814 T A VPS53 Missense_Mutation p.E221D 0.30 tolerated(0.1) benign(0.049) TCGA-35-3615-01 17 53485149 53485149 C G MMD Missense_Mutation p.R101T 0.08 deleterious(0) probably_damaging(0.986) TCGA-35-3615-01 17 79517503 79517503 C T C17orf70 Silent p.R339R 0.31 TCGA-35-3615-01 18 47801967 47801967 C G MBD1 Intron 0.28 TCGA-35-3615-01 18 48513152 48513152 A - ELAC1 Frame_Shift_Del p.K264Nfs*9 0.22 TCGA-35-3615-01 18 9814045 9814045 G A RAB31 Missense_Mutation p.R77Q 0.45 deleterious(0) possibly_damaging(0.887) TCGA-35-3615-01 19 10600510 10600510 C A KEAP1 Nonsense_Mutation p.E449* 0.58 TCGA-35-3615-01 19 10624671 10624671 C T S1PR5 Silent p.A339A 0.68 TCGA-35-3615-01 19 1220717 1220717 G T STK11 Splice_Site p.X245_splice 0.56 TCGA-35-3615-01 19 43236960 43236960 C T PSG3 Missense_Mutation p.D229N 0.18 deleterious(0.01) possibly_damaging(0.861) TCGA-35-3615-01 19 4512261 4512261 C G PLIN4 Missense_Mutation p.G557R 0.31 deleterious(0.05) possibly_damaging(0.908) TCGA-35-3615-01 19 53886133 53886133 C T ZNF525 3'UTR 0.30 TCGA-35-3615-01 19 56539676 56539676 G A NLRP5 Missense_Mutation p.E693K 0.32 deleterious(0) probably_damaging(0.999) TCGA-35-3615-01 19 57868090 57868090 G T ZNF304 Nonsense_Mutation p.G285* 0.25 TCGA-35-3615-01 19 9203982 9203982 C A OR1M1 Missense_Mutation p.P21Q 0.71 deleterious(0.01) benign(0.188) TCGA-35-3615-01 1 154931673 154931673 G A PYGO2 Missense_Mutation p.S268F 0.17 deleterious(0.01) benign(0.001) TCGA-35-3615-01 1 156779054 156779054 C T SH2D2A Missense_Mutation p.A325T 0.21 tolerated(0.45) benign(0.009) TCGA-35-3615-01 1 158590009 158590009 G T SPTA1 Missense_Mutation p.T2123K 0.45 deleterious(0) probably_damaging(0.92) TCGA-35-3615-01 1 161166644 161166644 C T ADAMTS4 Silent p.V220V 0.44 TCGA-35-3615-01 1 169580746 169580746 G T SELP Silent p.P377P 0.17 TCGA-35-3615-01 1 176526072 176526072 G C PAPPA2 Missense_Mutation p.R205P 0.46 tolerated(0.16) benign(0) TCGA-35-3615-01 1 181708376 181708376 G T CACNA1E Missense_Mutation p.A1236S 0.45 tolerated(0.09) probably_damaging(0.92) TCGA-35-3615-01 1 186643668 186643668 G A PTGS2 Silent p.I544I 0.23 TCGA-35-3615-01 1 204589053 204589053 A G LRRN2 Missense_Mutation p.V23A 0.37 tolerated(0.06) unknown(0) TCGA-35-3615-01 1 207200842 207200842 T A C1orf116 Silent p.G34G 0.19 TCGA-35-3615-01 1 215807951 215807951 C T USH2A Missense_Mutation p.M5049I 0.19 benign(0) TCGA-35-3615-01 1 221055574 221055574 G T HLX Missense_Mutation p.A281S 0.33 deleterious(0.01) probably_damaging(1) TCGA-35-3615-01 1 236849947 236849947 C A ACTN2 5'UTR 0.63 TCGA-35-3615-01 1 240421306 240421306 A G FMN2 Missense_Mutation p.H1376R 0.15 possibly_damaging(0.803) TCGA-35-3615-01 1 248059823 248059823 G T OR2W3 Missense_Mutation p.G312V 0.47 deleterious(0.01) unknown(0) TCGA-35-3615-01 1 248525231 248525231 C A OR2T4 Missense_Mutation p.Q117K 0.49 tolerated(0.26) benign(0.033) TCGA-35-3615-01 1 39957981 39957981 G C BMP8A Missense_Mutation p.M106I 0.26 deleterious(0) possibly_damaging(0.465) TCGA-35-3615-01 1 57349288 57349288 G T C8A Silent p.V263V 0.26 TCGA-35-3615-01 1 68895402 68895402 G T RPE65 3'UTR 0.43 TCGA-35-3615-01 1 92187533 92187533 G A TGFBR3 Missense_Mutation p.H352Y 0.09 deleterious(0.05) possibly_damaging(0.772) TCGA-35-3615-01 20 29891023 29891023 G T DEFB116 Missense_Mutation p.H101N 0.24 tolerated_low_confidence(0.14) benign(0.107) TCGA-35-3615-01 20 37356981 37356981 G T SLC32A1 Missense_Mutation p.G426V 0.31 deleterious(0.01) possibly_damaging(0.475) TCGA-35-3615-01 20 3804594 3804594 G A AP5S1 Missense_Mutation p.D85N 0.33 deleterious(0.01) possibly_damaging(0.876) TCGA-35-3615-01 20 5283318 5283318 C A PROKR2 Missense_Mutation p.A175S 0.23 tolerated(0.28) benign(0.159) TCGA-35-3615-01 20 61460132 61460132 A T COL9A3 Missense_Mutation p.D306V 0.29 deleterious(0) possibly_damaging(0.66) TCGA-35-3615-01 20 62121879 62121879 C T EEF1A2 Missense_Mutation p.D328N 0.30 tolerated_low_confidence(0.14) probably_damaging(0.998) TCGA-35-3615-01 22 17983959 17983959 C T CECR2 Missense_Mutation p.R220C 0.22 deleterious(0.01) probably_damaging(0.935) TCGA-35-3615-01 22 51018161 51018161 G A CHKB Silent p.V342V 0.27 TCGA-35-3615-01 2 102641036 102641036 G A IL1R2 Missense_Mutation p.G265S 0.32 tolerated(0.6) benign(0.368) TCGA-35-3615-01 2 108881397 108881397 G T SULT1C3 Missense_Mutation p.M246I 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-35-3615-01 2 116497337 116497337 C G DPP10 Missense_Mutation p.I244M 0.30 deleterious(0.01) possibly_damaging(0.704) TCGA-35-3615-01 2 11720872 11720872 C T GREB1 Missense_Mutation p.P272L 0.32 tolerated(0.12) benign(0.003) TCGA-35-3615-01 2 131519842 131519842 C A AMER3 Missense_Mutation p.P66H 0.30 deleterious(0.02) possibly_damaging(0.847) TCGA-35-3615-01 2 141055419 141055419 A T LRP1B Missense_Mutation p.C4309S 0.26 benign(0.152) TCGA-35-3615-01 2 141946049 141946049 G T LRP1B Silent p.V318V 0.35 TCGA-35-3615-01 2 163200646 163200646 C T GCA 5'UTR 0.16 TCGA-35-3615-01 2 179407873 179407873 C T TTN Missense_Mutation p.R32276K 0.20 TCGA-35-3615-01 2 223489197 223489197 C G FARSB Missense_Mutation p.E322Q 0.34 tolerated(0.3) benign(0.115) TCGA-35-3615-01 2 233897387 233897387 G A NEU2 Silent p.A2A 0.30 TCGA-35-3615-01 2 242141661 242141661 T C ANO7 Missense_Mutation p.L276P 0.28 deleterious(0.01) benign(0.396) TCGA-35-3615-01 2 25459873 25459873 G A DNMT3A Missense_Mutation p.P804S 0.30 deleterious(0.03) probably_damaging(0.993) TCGA-35-3615-01 2 79314691 79314691 G C REG1B Missense_Mutation p.F16L 0.21 tolerated(0.84) benign(0) TCGA-35-3615-01 3 132075715 132075715 C T ACPP Intron 0.31 TCGA-35-3615-01 3 134322838 134322838 C T KY Silent p.L523L 0.23 TCGA-35-3615-01 3 38454427 38454427 G T XYLB Missense_Mutation p.V512F 0.27 deleterious(0.01) possibly_damaging(0.578) TCGA-35-3615-01 3 40433722 40433722 G C ENTPD3 Intron 0.15 TCGA-35-3615-01 3 69101202 69101202 G A TMF1 Silent p.F12F 0.08 TCGA-35-3615-01 4 159894386 159894386 C G C4orf45 Missense_Mutation p.E48Q 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-35-3615-01 4 38051323 38051323 G A TBC1D1 Missense_Mutation p.D572N 0.23 tolerated(0.19) benign(0.223) TCGA-35-3615-01 4 56236046 56236046 G A SRD5A3 Missense_Mutation p.E249K 0.18 deleterious(0.01) benign(0.31) TCGA-35-3615-01 4 68688033 68688033 C T TMPRSS11D 3'UTR 0.27 TCGA-35-3615-01 4 69343128 69343128 C T TMPRSS11E Missense_Mutation p.T250I 0.34 tolerated(0.06) probably_damaging(0.943) TCGA-35-3615-01 4 73013156 73013156 C T NPFFR2 Missense_Mutation p.S399L 0.24 tolerated(0.05) probably_damaging(0.986) TCGA-35-3615-01 4 76898821 76898821 C A SDAD1 Missense_Mutation p.C128F 0.18 deleterious(0) probably_damaging(0.943) TCGA-35-3615-01 5 114466398 114466398 A C TRIM36 Missense_Mutation p.F575V 0.20 deleterious(0) probably_damaging(0.936) TCGA-35-3615-01 5 134235280 134235280 T G TXNDC15 Missense_Mutation p.L330V 0.42 tolerated(0.48) possibly_damaging(0.571) TCGA-35-3615-01 5 140741992 140741992 G T PCDHGB2 Nonsense_Mutation p.E764* 0.41 TCGA-35-3615-01 5 154320812 154320812 A G MRPL22 Missense_Mutation p.K22E 0.10 tolerated(0.92) benign(0.015) TCGA-35-3615-01 5 156589711 156589711 G T FAM71B Missense_Mutation p.S522Y 0.47 deleterious(0) benign(0.434) TCGA-35-3615-01 5 50683505 50683505 G A ISL1 Missense_Mutation p.D134N 0.16 tolerated(0.16) benign(0.005) TCGA-35-3615-01 6 10398887 10398887 C T TFAP2A Silent p.L359L 0.06 TCGA-35-3615-01 6 159065728 159065728 G C DYNLT1 Missense_Mutation p.Q5E 0.26 tolerated(0.47) benign(0.002) TCGA-35-3615-01 6 32097522 32097522 C A FKBPL Missense_Mutation p.K12N 0.64 tolerated_low_confidence(0.05) benign(0.002) TCGA-35-3615-01 7 100172651 100172651 C T LRCH4 3'UTR 0.20 TCGA-35-3615-01 7 107558381 107558381 A G DLD Missense_Mutation p.K417E 0.34 deleterious(0.01) possibly_damaging(0.86) TCGA-35-3615-01 7 12668762 12668762 G A SCIN Missense_Mutation p.D412N 0.21 tolerated(0.12) benign(0.007) TCGA-35-3615-01 7 42012056 42012056 C G GLI3 Missense_Mutation p.Q661H 0.29 tolerated(0.08) benign(0.005) TCGA-35-3615-01 7 5105125 5105125 G T RBAK Nonsense_Mutation p.E680* 0.30 TCGA-35-3615-01 7 6732203 6732203 C G ZNF12 Missense_Mutation p.E124Q 0.30 tolerated(0.46) benign(0.007) TCGA-35-3615-01 8 105509951 105509951 C G LRP12 Missense_Mutation p.D277H 0.16 tolerated(0.13) probably_damaging(0.941) TCGA-35-3615-01 8 20110503 20110503 G A LZTS1 Silent p.G313G 0.29 TCGA-35-3615-01 9 136290667 136290667 G A ADAMTS13 Missense_Mutation p.D117N 0.17 deleterious(0.04) possibly_damaging(0.651) TCGA-35-3615-01 9 136291428 136291428 G C ADAMTS13 Missense_Mutation p.D217H 0.23 deleterious(0) probably_damaging(1) TCGA-35-3615-01 9 17466001 17466001 G T CNTLN Missense_Mutation p.C1185F 0.25 deleterious(0) probably_damaging(0.971) TCGA-35-3615-01 9 39085591 39085591 C A CNTNAP3 Intron 0.21 TCGA-35-3615-01 9 77598666 77598666 G A C9orf41 3'UTR 0.17 TCGA-35-3615-01 9 98218671 98218671 C A PTCH1 Missense_Mutation p.V1065F 0.31 deleterious(0) possibly_damaging(0.685) TCGA-35-3615-01 X 109764617 109764617 G A TDGF1P3 RNA 0.11 TCGA-35-3615-01 X 152027454 152027454 G T NSDHL Silent p.G136G 0.47 TCGA-35-3615-01 X 47034469 47034470 - A RBM10 Frame_Shift_Ins p.R186Tfs*23 0.53 TCGA-35-3615-01 X 49031943 49031943 C T PRICKLE3 3'UTR 0.62 TCGA-35-3615-01 X 88009330 88009330 G T CPXCR1 3'UTR 0.45 TCGA-35-3615-01 X 88009331 88009331 G T CPXCR1 3'UTR 0.50 TCGA-35-4122-01 10 101716274 101716274 C A DNMBP Missense_Mutation p.R319S 0.15 tolerated_low_confidence(0.41) benign(0.001) TCGA-35-4122-01 10 103908224 103908224 C T PPRC1 Missense_Mutation p.S1499F 0.10 deleterious_low_confidence(0.05) possibly_damaging(0.485) TCGA-35-4122-01 10 105811939 105811939 C A COL17A1 Missense_Mutation p.G659V 0.14 unknown(0) TCGA-35-4122-01 10 124378843 124378843 G T DMBT1 Silent p.T1616T 0.14 TCGA-35-4122-01 10 124378844 124378844 C T DMBT1 Missense_Mutation p.P1617S 0.14 tolerated(0.35) possibly_damaging(0.519) TCGA-35-4122-01 10 126477687 126477687 C T METTL10 Missense_Mutation p.M72I 0.09 tolerated(0.72) benign(0.002) TCGA-35-4122-01 10 129350835 129350835 A T NPS Nonsense_Mutation p.K68* 0.08 TCGA-35-4122-01 10 135020282 135020282 G T KNDC1 Missense_Mutation p.G1161C 0.07 deleterious(0) probably_damaging(0.999) TCGA-35-4122-01 10 135020832 135020832 G A KNDC1 Silent p.G1257G 0.28 TCGA-35-4122-01 10 16556392 16556392 G T C1QL3 3'UTR 0.30 TCGA-35-4122-01 10 17373541 17373541 C A ST8SIA6 Missense_Mutation p.A130S 0.13 tolerated(0.41) benign(0.007) TCGA-35-4122-01 10 17737234 17737234 A G STAM Missense_Mutation p.D241G 0.11 deleterious(0) probably_damaging(1) TCGA-35-4122-01 10 26377216 26377216 G T MYO3A Missense_Mutation p.D482Y 0.16 deleterious(0) probably_damaging(0.938) TCGA-35-4122-01 10 26562572 26562572 G - GAD2 Frame_Shift_Del p.G368Vfs*5 0.14 TCGA-35-4122-01 10 53227490 53227490 G T PRKG1 Missense_Mutation p.K162N 0.14 tolerated(0.28) benign(0.061) TCGA-35-4122-01 10 53227491 53227491 G T PRKG1 Missense_Mutation p.V163F 0.14 tolerated(0.22) benign(0.076) TCGA-35-4122-01 10 54527775 54527775 T C MBL2 3'UTR 0.15 TCGA-35-4122-01 10 61832818 61832818 C A ANK3 Missense_Mutation p.Q2607H 0.05 probably_damaging(0.969) TCGA-35-4122-01 10 70931060 70931060 C A VPS26A 3'UTR 0.19 TCGA-35-4122-01 10 72633154 72633154 A G SGPL1 Missense_Mutation p.K369R 0.23 deleterious(0.02) benign(0.098) TCGA-35-4122-01 10 7786869 7786869 C G ITIH2 Missense_Mutation p.L842V 0.13 deleterious(0) probably_damaging(1) TCGA-35-4122-01 10 87898668 87898668 T A GRID1 Missense_Mutation p.M212L 0.21 tolerated(0.18) possibly_damaging(0.881) TCGA-35-4122-01 10 96443609 96443609 C A CYP2C18 Silent p.L11L 0.10 TCGA-35-4122-01 10 96541656 96541656 G A CYP2C19 Missense_Mutation p.E241K 0.10 tolerated(1) benign(0.001) TCGA-35-4122-01 10 97969624 97969624 G C BLNK Missense_Mutation p.P239R 0.11 deleterious(0.02) probably_damaging(0.917) TCGA-35-4122-01 11 102709892 102709892 C T MMP3 Missense_Mutation p.V340M 0.07 tolerated(0.11) benign(0.06) TCGA-35-4122-01 11 108057298 108057298 T A NPAT Splice_Site p.X213_splice 0.06 TCGA-35-4122-01 11 116657265 116657265 C A ZNF259 Missense_Mutation p.A153S 0.14 tolerated(0.2) possibly_damaging(0.778) TCGA-35-4122-01 11 118344632 118344632 G T KMT2A Missense_Mutation p.D920Y 0.09 possibly_damaging(0.643) TCGA-35-4122-01 11 118771514 118771514 C A BCL9L Missense_Mutation p.G980C 0.09 possibly_damaging(0.748) TCGA-35-4122-01 11 123624563 123624563 C A OR6X1 Missense_Mutation p.A222S 0.09 deleterious(0.03) benign(0.077) TCGA-35-4122-01 11 123813616 123813616 G T OR6T1 Silent p.L310L 0.13 TCGA-35-4122-01 11 123900648 123900648 G - OR10G8 Frame_Shift_Del p.G108Afs*27 0.11 TCGA-35-4122-01 11 1247870 1247870 G A MUC5B Silent p.R75R 0.16 TCGA-35-4122-01 11 134252846 134252846 G T B3GAT1 Silent p.R226R 0.27 TCGA-35-4122-01 11 18330609 18330609 C A HPS5 Silent p.V165V 0.16 TCGA-35-4122-01 11 55541338 55541338 T C OR5D13 Missense_Mutation p.L142P 0.11 deleterious(0) probably_damaging(0.981) TCGA-35-4122-01 11 55761554 55761554 G - OR5F1 Frame_Shift_Del p.P183Hfs*12 0.14 TCGA-35-4122-01 11 55873453 55873453 G A OR8H2 Missense_Mutation p.R312K 0.10 tolerated_low_confidence(0.21) benign(0.029) TCGA-35-4122-01 11 59282669 59282669 G A OR4D9 Missense_Mutation p.S95N 0.15 tolerated(1) benign(0) TCGA-35-4122-01 11 60070118 60070118 T C MS4A4A Silent p.Y158Y 0.06 TCGA-35-4122-01 11 65385568 65385568 C T PCNXL3 Silent p.L245L 0.20 TCGA-35-4122-01 11 65385575 65385575 G T PCNXL3 Nonsense_Mutation p.E248* 0.15 TCGA-35-4122-01 11 65402863 65402863 G A PCNXL3 Missense_Mutation p.D1710N 0.10 tolerated(0.34) benign(0.131) TCGA-35-4122-01 11 67259578 67259578 G C PITPNM1 Missense_Mutation p.P1221A 0.17 tolerated_low_confidence(0.15) benign(0.001) TCGA-35-4122-01 11 75115888 75115888 C T RPS3 Silent p.P253P 0.20 TCGA-35-4122-01 11 78399145 78399145 T G TENM4 Silent p.I1738I 0.08 TCGA-35-4122-01 11 93464220 93464220 C T KIAA1731 3'Flank 0.11 TCGA-35-4122-01 11 9983593 9983593 C - SBF2 Frame_Shift_Del p.E591Nfs*13 0.10 TCGA-35-4122-01 12 10374401 10374401 G T GABARAPL1 Missense_Mutation p.D102Y 0.12 deleterious(0) probably_damaging(1) TCGA-35-4122-01 12 104123896 104123896 C G STAB2 Missense_Mutation p.S1695R 0.16 deleterious(0.01) benign(0.008) TCGA-35-4122-01 12 114832619 114832619 T C TBX5 Missense_Mutation p.K197R 0.08 tolerated(0.13) benign(0.003) TCGA-35-4122-01 12 117962721 117962721 G T KSR2 Missense_Mutation p.H719N 0.10 deleterious(0) probably_damaging(1) TCGA-35-4122-01 12 124832795 124832795 T A NCOR2 Missense_Mutation p.T1304S 0.17 benign(0.406) TCGA-35-4122-01 12 131439012 131439012 T A GPR133 Translation_Start_Site p.M1? 0.13 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-35-4122-01 12 132322635 132322635 G A MMP17 Intron 0.16 TCGA-35-4122-01 12 133245323 133245323 G C POLE Missense_Mutation p.P642A 0.13 deleterious(0) probably_damaging(1) TCGA-35-4122-01 12 13716171 13716171 C T GRIN2B Missense_Mutation p.S1334N 0.13 tolerated(0.22) probably_damaging(0.996) TCGA-35-4122-01 12 18890379 18890379 A C PLCZ1 5'UTR 0.21 TCGA-35-4122-01 12 1940308 1940308 C T LRTM2 Missense_Mutation p.S92F 0.17 deleterious(0) probably_damaging(0.995) TCGA-35-4122-01 12 23893822 23893822 C A SOX5 Silent p.L240L 0.13 TCGA-35-4122-01 12 23893823 23893823 A G SOX5 Missense_Mutation p.L240P 0.12 deleterious(0) probably_damaging(0.999) TCGA-35-4122-01 12 24736571 24736571 G T LINC00477 RNA 0.16 TCGA-35-4122-01 12 49437167 49437167 C A KMT2D Nonsense_Mutation p.E1838* 0.12 TCGA-35-4122-01 12 5154911 5154911 C T KCNA5 Missense_Mutation p.A533V 0.22 tolerated(0.15) benign(0.002) TCGA-35-4122-01 12 52845781 52845781 C T KRT6B Missense_Mutation p.V28I 0.13 tolerated(0.42) unknown(0) TCGA-35-4122-01 12 52863627 52863627 C A KRT6C Missense_Mutation p.E417D 0.29 tolerated(0.16) probably_damaging(0.983) TCGA-35-4122-01 12 53090181 53090181 G A KRT77 Silent p.S264S 0.06 TCGA-35-4122-01 12 53468892 53468892 C A SPRYD3 Missense_Mutation p.A120S 0.06 deleterious(0.03) probably_damaging(0.967) TCGA-35-4122-01 12 53563881 53563881 C T CSAD Missense_Mutation p.R253K 0.09 tolerated(0.89) benign(0) TCGA-35-4122-01 12 54448708 54448708 G C HOXC4 Missense_Mutation p.E172Q 0.17 deleterious(0) probably_damaging(1) TCGA-35-4122-01 12 6959654 6959654 G T CDCA3 Missense_Mutation p.T76K 0.18 deleterious(0) probably_damaging(0.99) TCGA-35-4122-01 12 78415581 78415581 T A NAV3 Missense_Mutation p.S654R 0.07 tolerated(0.11) probably_damaging(0.999) TCGA-35-4122-01 12 79679736 79679736 G A SYT1 Silent p.K112K 0.18 TCGA-35-4122-01 12 8048203 8048203 G A NANOGP1 RNA 0.17 TCGA-35-4122-01 13 19751266 19751266 A T TUBA3C Missense_Mutation p.L286Q 0.09 deleterious_low_confidence(0) benign(0.118) TCGA-35-4122-01 13 19751284 19751284 T A TUBA3C Missense_Mutation p.K280M 0.22 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-35-4122-01 13 20012237 20012237 C A TPTE2 Missense_Mutation p.A344S 0.23 deleterious(0.03) possibly_damaging(0.898) TCGA-35-4122-01 13 24449047 24449047 G T MIPEP Silent p.R181R 0.10 TCGA-35-4122-01 13 42784849 42784849 G T DGKH Nonsense_Mutation p.E988* 0.07 TCGA-35-4122-01 13 77570114 77570114 C A CLN5 Missense_Mutation p.F188L 0.19 deleterious(0.05) probably_damaging(0.994) TCGA-35-4122-01 14 106307427 106307427 C T IGHD Nonsense_Mutation p.W204* 0.25 TCGA-35-4122-01 14 20404336 20404336 C T OR4K1 Missense_Mutation p.P171S 0.23 deleterious(0.03) probably_damaging(1) TCGA-35-4122-01 14 28734444 28734444 G T BNIP3P1 RNA 0.19 TCGA-35-4122-01 14 58941426 58941426 G T KIAA0586 Silent p.P965P 0.27 TCGA-35-4122-01 14 73945385 73945385 C T HEATR4 Missense_Mutation p.G1003S 0.32 tolerated_low_confidence(0.37) benign(0.003) TCGA-35-4122-01 14 75230867 75230867 G A YLPM1 Silent p.L225L 0.34 TCGA-35-4122-01 14 81609452 81609452 T A TSHR Silent p.A350A 0.31 TCGA-35-4122-01 14 81609453 81609453 C T TSHR Missense_Mutation p.H351Y 0.30 tolerated(0.46) benign(0.139) TCGA-35-4122-01 14 93412788 93412788 C A ITPK1 Silent p.R263R 0.13 TCGA-35-4122-01 14 94568260 94568260 A G IFI27L1 Silent p.A54A 0.07 TCGA-35-4122-01 15 22368951 22368951 A T OR4M2 Missense_Mutation p.I126F 0.25 deleterious(0) possibly_damaging(0.776) TCGA-35-4122-01 15 25438301 25438301 T C SNORD115-11 3'Flank 0.20 TCGA-35-4122-01 15 25472319 25472319 T C SNORD115-31 RNA 0.10 TCGA-35-4122-01 15 43486931 43486931 T A CCNDBP1 Missense_Mutation p.S325R 0.12 deleterious(0.02) benign(0.092) TCGA-35-4122-01 15 48541816 48541816 G A SLC12A1 Missense_Mutation p.A577T 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-35-4122-01 15 57838327 57838327 A T CGNL1 Missense_Mutation p.E1221D 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-35-4122-01 15 60795017 60795017 C A RORA Missense_Mutation p.Q408H 0.13 tolerated(0.12) benign(0.014) TCGA-35-4122-01 15 63829318 63829318 A C USP3 Missense_Mutation p.T83P 0.07 tolerated(0.12) benign(0.209) TCGA-35-4122-01 15 65678177 65678177 T C IGDCC4 Missense_Mutation p.K1058E 0.14 tolerated(0.23) benign(0.025) TCGA-35-4122-01 15 68583378 68583378 A C FEM1B Missense_Mutation p.E561A 0.28 deleterious(0.01) benign(0.3) TCGA-35-4122-01 15 72499545 72499545 C A PKM Nonsense_Mutation p.E304* 0.09 TCGA-35-4122-01 16 109338 109338 T G RHBDF1 Missense_Mutation p.M635L 0.19 tolerated(1) benign(0.001) TCGA-35-4122-01 16 20043226 20043226 G T GPR139 Missense_Mutation p.A298D 0.13 tolerated(0.35) benign(0.022) TCGA-35-4122-01 16 27802749 27802749 G C GSG1L Missense_Mutation p.S313C 0.36 deleterious_low_confidence(0.03) possibly_damaging(0.712) TCGA-35-4122-01 16 28509248 28509248 A G APOBR Silent p.S962S 0.12 TCGA-35-4122-01 16 28845407 28845407 A G ATXN2L Missense_Mutation p.T683A 0.10 tolerated(0.05) probably_damaging(0.98) TCGA-35-4122-01 16 55900000 55900000 A T CES5A Missense_Mutation p.W223R 0.12 deleterious(0) probably_damaging(1) TCGA-35-4122-01 16 617995 617995 C T NHLRC4 5'UTR 0.57 TCGA-35-4122-01 16 67575922 67575922 C A FAM65A Silent p.P431P 0.23 TCGA-35-4122-01 17 10356616 10356616 A T MYH4 Silent p.G988G 0.07 TCGA-35-4122-01 17 10608747 10608747 G C ADPRM Missense_Mutation p.L168F 0.07 tolerated(0.14) possibly_damaging(0.82) TCGA-35-4122-01 17 11608469 11608469 C T DNAH9 Missense_Mutation p.T1840I 0.06 probably_damaging(0.93) TCGA-35-4122-01 17 12656522 12656522 G T MYOCD Silent p.P639P 0.12 TCGA-35-4122-01 17 2996027 2996027 A C OR1D2 Missense_Mutation p.H88Q 0.07 tolerated(1) benign(0) TCGA-35-4122-01 17 33475291 33475291 G A UNC45B Silent p.E3E 0.09 TCGA-35-4122-01 17 33507682 33507682 T A UNC45B Missense_Mutation p.V789E 0.10 deleterious(0) possibly_damaging(0.71) TCGA-35-4122-01 17 35766360 35766360 C G ACACA Missense_Mutation p.L10F 0.11 deleterious_low_confidence(0) unknown(0) TCGA-35-4122-01 17 37646907 37646907 G T CDK12 Missense_Mutation p.G677C 0.30 probably_damaging(0.979) TCGA-35-4122-01 17 37646908 37646908 G A CDK12 Missense_Mutation p.G677D 0.31 possibly_damaging(0.78) TCGA-35-4122-01 17 38859775 38859775 G A KRT24 Silent p.S57S 0.28 TCGA-35-4122-01 17 41166314 41166314 T A IFI35 Nonstop_Mutation p.*289Kext*? 0.10 TCGA-35-4122-01 17 45811197 45811197 C T TBX21 Missense_Mutation p.A126V 0.18 deleterious(0.01) benign(0.001) TCGA-35-4122-01 17 45811198 45811198 G T TBX21 Silent p.A126A 0.23 TCGA-35-4122-01 17 47875785 47875785 C T KAT7 Missense_Mutation p.H149Y 0.07 deleterious(0.02) benign(0.081) TCGA-35-4122-01 17 61623123 61623123 C A KCNH6 Missense_Mutation p.L949I 0.20 tolerated_low_confidence(0.09) benign(0.064) TCGA-35-4122-01 17 6683889 6683889 C T FBXO39 Silent p.N234N 0.06 TCGA-35-4122-01 17 7317997 7317997 G T NLGN2 Missense_Mutation p.G225V 0.06 deleterious(0.01) probably_damaging(1) TCGA-35-4122-01 17 7577535 7577535 C A TP53 Missense_Mutation p.R249M 0.08 deleterious(0) probably_damaging(0.993) TCGA-35-4122-01 17 7578175 7578175 A G TP53 Splice_Site p.X224_splice 0.09 TCGA-35-4122-01 18 12340269 12340269 G A AFG3L2 Silent p.I637I 0.03 TCGA-35-4122-01 18 2752505 2752505 A G SMCHD1 Missense_Mutation p.N1434S 0.10 tolerated(1) benign(0.002) TCGA-35-4122-01 18 35145565 35145565 C A CELF4 Missense_Mutation p.D14Y 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-35-4122-01 18 67563198 67563198 T C CD226 Missense_Mutation p.M156V 0.14 tolerated(0.39) benign(0.011) TCGA-35-4122-01 18 74606978 74606978 G A ZNF236 Missense_Mutation p.R474H 0.12 deleterious(0) probably_damaging(0.999) TCGA-35-4122-01 18 9550049 9550049 C A PPP4R1 Splice_Site p.X849_splice 0.11 TCGA-35-4122-01 19 10445249 10445249 C A ICAM3 Missense_Mutation p.G383C 0.17 deleterious(0) probably_damaging(0.995) TCGA-35-4122-01 19 2249448 2249448 C T AMH Silent p.F39F 0.28 TCGA-35-4122-01 19 31769680 31769680 G T TSHZ3 Missense_Mutation p.T340N 0.06 deleterious(0.02) probably_damaging(0.997) TCGA-35-4122-01 19 3180007 3180007 G C S1PR4 3'UTR 0.25 TCGA-35-4122-01 19 3180008 3180008 G T S1PR4 3'UTR 0.26 TCGA-35-4122-01 19 35231797 35231797 T C ZNF181 Missense_Mutation p.S171P 0.59 tolerated(0.2) benign(0.237) TCGA-35-4122-01 19 36003604 36003604 C A DMKN Missense_Mutation p.W172L 0.07 deleterious(0.01) probably_damaging(0.979) TCGA-35-4122-01 19 38056034 38056034 T A ZNF571 Missense_Mutation p.K432N 0.08 deleterious(0.04) probably_damaging(0.95) TCGA-35-4122-01 19 38954167 38954167 G C RYR1 Silent p.P894P 0.70 TCGA-35-4122-01 19 40900895 40900895 G A PRX Nonsense_Mutation p.Q1122* 0.05 TCGA-35-4122-01 19 41220467 41220467 C G ADCK4 Missense_Mutation p.C24S 0.04 tolerated_low_confidence(0.4) benign(0.103) TCGA-35-4122-01 19 42866259 42866259 C T MEGF8 Missense_Mutation p.S1846F 0.21 tolerated(0.06) benign(0.03) TCGA-35-4122-01 19 48735020 48735020 T C CARD8 Missense_Mutation p.K147E 0.25 tolerated(0.26) benign(0.008) TCGA-35-4122-01 19 51656446 51656446 C A SIGLEC7 Missense_Mutation p.L450I 0.25 tolerated(0.41) benign(0.254) TCGA-35-4122-01 19 53057748 53057748 G T ZNF808 Missense_Mutation p.V527L 0.21 tolerated(0.38) benign(0.001) TCGA-35-4122-01 19 53208178 53208178 T A ZNF611 3'UTR 0.10 TCGA-35-4122-01 19 54080224 54080224 G A ZNF331 Missense_Mutation p.G137E 0.21 tolerated(0.1) probably_damaging(0.998) TCGA-35-4122-01 19 54139992 54139992 G T DPRX Missense_Mutation p.R109I 0.19 tolerated(0.13) possibly_damaging(0.855) TCGA-35-4122-01 19 54754668 54754668 G A LILRB5 Silent p.A586A 0.09 TCGA-35-4122-01 19 55222023 55222023 C T AC098784.2 3'Flank 0.12 TCGA-35-4122-01 19 55452324 55452324 T C NLRP7 Silent p.E109E 0.15 TCGA-35-4122-01 19 56042603 56042603 C T SBK2 Silent p.T121T 0.09 TCGA-35-4122-01 19 58152630 58152630 G T ZNF211 Missense_Mutation p.C324F 0.17 deleterious(0) probably_damaging(0.999) TCGA-35-4122-01 19 58152631 58152631 C T ZNF211 Silent p.C324C 0.17 TCGA-35-4122-01 19 58437834 58437834 C A ZNF418 Missense_Mutation p.G572V 0.18 deleterious(0) probably_damaging(0.989) TCGA-35-4122-01 19 9046507 9046507 A G MUC16 Silent p.F11708F 0.23 TCGA-35-4122-01 1 10412785 10412785 A G KIF1B Missense_Mutation p.N1303S 0.16 tolerated(0.18) benign(0.001) TCGA-35-4122-01 1 11116146 11116146 C T SRM Missense_Mutation p.A181T 0.18 deleterious(0) probably_damaging(0.991) TCGA-35-4122-01 1 111216208 111216208 C T KCNA3 Silent p.G408G 0.09 TCGA-35-4122-01 1 112043035 112043035 G C ADORA3 Intron 0.09 TCGA-35-4122-01 1 12884889 12884889 G T PRAMEF11 Missense_Mutation p.P408T 0.05 tolerated(0.05) probably_damaging(0.983) TCGA-35-4122-01 1 14108797 14108797 G T PRDM2 Missense_Mutation p.A1503S 0.11 unknown(0) TCGA-35-4122-01 1 146747843 146747843 G A CHD1L Silent p.L487L 0.10 TCGA-35-4122-01 1 149898396 149898396 C G SF3B4 Missense_Mutation p.R193P 0.20 deleterious(0) probably_damaging(0.999) TCGA-35-4122-01 1 152188299 152188299 G A HRNR Missense_Mutation p.H1936Y 0.03 unknown(0) TCGA-35-4122-01 1 152191001 152191001 G T HRNR Nonsense_Mutation p.S1035* 0.05 TCGA-35-4122-01 1 152191909 152191909 C T HRNR Silent p.R732R 0.08 TCGA-35-4122-01 1 153066017 153066017 T C SPRR2E Missense_Mutation p.S71G 0.08 tolerated_low_confidence(0.21) unknown(0) TCGA-35-4122-01 1 156697502 156697502 A G ISG20L2 5'UTR 0.08 TCGA-35-4122-01 1 158326285 158326285 C A CD1E Intron 0.28 TCGA-35-4122-01 1 160001425 160001425 A G PIGM Silent p.Y35Y 0.35 TCGA-35-4122-01 1 160275308 160275308 T C COPA Missense_Mutation p.I537V 0.07 tolerated(0.25) benign(0.005) TCGA-35-4122-01 1 163295923 163295923 G A NUF2 Missense_Mutation p.G28S 0.21 tolerated(0.11) probably_damaging(0.981) TCGA-35-4122-01 1 16375653 16375653 T C CLCNKB Missense_Mutation p.S232P 0.08 deleterious(0) benign(0.151) TCGA-35-4122-01 1 165378824 165378824 G A RXRG Silent p.H339H 0.56 TCGA-35-4122-01 1 170521505 170521505 G A GORAB Missense_Mutation p.V363I 0.08 tolerated_low_confidence(0.45) benign(0.006) TCGA-35-4122-01 1 176762792 176762792 C A PAPPA2 Missense_Mutation p.P1706H 0.07 deleterious(0) probably_damaging(1) TCGA-35-4122-01 1 179659996 179659996 C T TDRD5 Missense_Mutation p.A1009V 0.08 tolerated(0.21) probably_damaging(0.999) TCGA-35-4122-01 1 181725177 181725177 A T CACNA1E Missense_Mutation p.I1359F 0.11 deleterious(0.01) benign(0.175) TCGA-35-4122-01 1 182026889 182026889 C A ZNF648 Missense_Mutation p.S86I 0.16 deleterious(0.02) benign(0.246) TCGA-35-4122-01 1 185834871 185834871 A C HMCN1 Splice_Site p.X167_splice 0.07 TCGA-35-4122-01 1 185984418 185984418 G C HMCN1 Missense_Mutation p.Q1586H 0.08 possibly_damaging(0.866) TCGA-35-4122-01 1 186064444 186064444 T C HMCN1 Missense_Mutation p.M3455T 0.06 probably_damaging(0.966) TCGA-35-4122-01 1 206327587 206327587 C T CTSE Missense_Mutation p.A259V 0.06 tolerated(0.12) benign(0.083) TCGA-35-4122-01 1 21560098 21560098 T C ECE1 Silent p.S541S 0.19 TCGA-35-4122-01 1 215953238 215953238 C T USH2A Missense_Mutation p.G3629E 0.05 probably_damaging(0.993) TCGA-35-4122-01 1 216052334 216052334 C G USH2A Missense_Mutation p.S2777T 0.04 benign(0.098) TCGA-35-4122-01 1 22021556 22021556 C T USP48 Intron 0.10 TCGA-35-4122-01 1 22902781 22902781 C T EPHA8 Silent p.S77S 0.09 TCGA-35-4122-01 1 233190059 233190059 C A PCNXL2 Nonsense_Mutation p.G1436* 0.20 TCGA-35-4122-01 1 23688996 23688996 G A ZNF436 Silent p.L293L 0.23 TCGA-35-4122-01 1 238048467 238048467 G T ZP4 Missense_Mutation p.P437T 0.11 tolerated(0.09) possibly_damaging(0.783) TCGA-35-4122-01 1 240492752 240492752 T A FMN2 Missense_Mutation p.L1474Q 0.09 probably_damaging(0.998) TCGA-35-4122-01 1 247875404 247875404 A G OR6F1 Silent p.Y218Y 0.12 TCGA-35-4122-01 1 247901919 247901919 G T OR14K1 Translation_Start_Site p.M1? 0.14 deleterious(0.03) possibly_damaging(0.75) TCGA-35-4122-01 1 248403108 248403108 G A OR2M4 Missense_Mutation p.R293H 0.10 deleterious(0.01) benign(0.009) TCGA-35-4122-01 1 248436738 248436738 G C OR2T33 Missense_Mutation p.P127A 0.08 deleterious(0) probably_damaging(0.999) TCGA-35-4122-01 1 248789557 248789557 G A OR2T11 Silent p.N291N 0.10 TCGA-35-4122-01 1 28598891 28598891 C T SESN2 Missense_Mutation p.R151W 0.15 tolerated(0.14) benign(0.443) TCGA-35-4122-01 1 3328888 3328888 G T PRDM16 Missense_Mutation p.M709I 0.18 tolerated(0.48) benign(0.005) TCGA-35-4122-01 1 35496222 35496222 C A ZMYM6 Missense_Mutation p.G7C 0.14 deleterious(0) probably_damaging(0.974) TCGA-35-4122-01 1 39798844 39798844 A T MACF1 Intron 0.10 TCGA-35-4122-01 1 39929350 39929350 A G MACF1 Missense_Mutation p.K5190E 0.08 probably_damaging(0.974) TCGA-35-4122-01 1 47279668 47279668 C A CYP4B1 Missense_Mutation p.F236L 0.16 tolerated(0.96) benign(0.027) TCGA-35-4122-01 1 4832529 4832529 C A AJAP1 Silent p.T369T 0.12 TCGA-35-4122-01 1 66713197 66713197 C A PDE4B Silent p.A112A 0.10 TCGA-35-4122-01 1 75139260 75139260 C T C1orf173 5'UTR 0.12 TCGA-35-4122-01 1 981920 981920 C T AGRN Missense_Mutation p.P1019S 0.17 tolerated(0.79) possibly_damaging(0.641) TCGA-35-4122-01 1 99771306 99771306 C A LPPR4 Silent p.L344L 0.12 TCGA-35-4122-01 20 2819264 2819264 G A PCED1A Missense_Mutation p.T191I 0.12 tolerated(0.06) benign(0.411) TCGA-35-4122-01 20 30602764 30602764 T G CCM2L Missense_Mutation p.C30G 0.15 tolerated(0.46) benign(0) TCGA-35-4122-01 20 36640042 36640042 G C TTI1 Nonsense_Mutation p.S726* 0.09 TCGA-35-4122-01 20 37154091 37154091 G C RALGAPB Missense_Mutation p.R611P 0.08 deleterious(0) probably_damaging(0.999) TCGA-35-4122-01 20 42974015 42974015 T C R3HDML Missense_Mutation p.I209T 0.13 tolerated(0.44) benign(0.005) TCGA-35-4122-01 20 44108308 44108308 C G WFDC2 Intron 0.12 TCGA-35-4122-01 20 44674597 44674597 C A SLC12A5 Silent p.L573L 0.07 TCGA-35-4122-01 20 45242166 45242166 C T SLC13A3 Missense_Mutation p.E104K 0.09 deleterious(0) probably_damaging(1) TCGA-35-4122-01 20 48604461 48604461 C T SNAI1 Silent p.S221S 0.15 TCGA-35-4122-01 20 49576222 49576222 G A MOCS3 Silent p.L281L 0.19 TCGA-35-4122-01 20 50235517 50235517 C G ATP9A Silent p.L727L 0.12 TCGA-35-4122-01 20 5096118 5096118 C T PCNA Missense_Mutation p.S228N 0.12 tolerated(0.14) benign(0.031) TCGA-35-4122-01 20 52192873 52192873 A G ZNF217 Silent p.S810S 0.15 TCGA-35-4122-01 20 57829393 57829393 G C ZNF831 Missense_Mutation p.L1543F 0.12 deleterious(0.02) possibly_damaging(0.678) TCGA-35-4122-01 21 42769609 42769609 G T MX2 Missense_Mutation p.M380I 0.11 tolerated(0.42) benign(0.001) TCGA-35-4122-01 21 43412010 43412010 G C ZBTB21 Missense_Mutation p.S732C 0.18 deleterious(0) probably_damaging(0.935) TCGA-35-4122-01 22 42609585 42609585 G C TCF20 Missense_Mutation p.A576G 0.17 benign(0) TCGA-35-4122-01 2 101192998 101192998 A C PDCL3 3'UTR 0.20 TCGA-35-4122-01 2 108622628 108622628 A G SLC5A7 Missense_Mutation p.I289V 0.16 tolerated(1) benign(0.003) TCGA-35-4122-01 2 120776812 120776812 A T EPB41L5 Missense_Mutation p.D51V 0.09 deleterious(0) probably_damaging(1) TCGA-35-4122-01 2 130900723 130900723 C A CCDC74B Intron 0.33 TCGA-35-4122-01 2 135743482 135743482 G C MAP3K19 Missense_Mutation p.S987C 0.17 deleterious(0.01) benign(0.188) TCGA-35-4122-01 2 139322350 139322350 G A SPOPL Missense_Mutation p.D304N 0.07 tolerated(0.08) benign(0.119) TCGA-35-4122-01 2 152226549 152226549 G T TNFAIP6 Missense_Mutation p.G137V 0.20 deleterious(0) probably_damaging(0.998) TCGA-35-4122-01 2 152273319 152273319 A G RIF1 Splice_Site p.X137_splice 0.22 TCGA-35-4122-01 2 155555401 155555401 G T KCNJ3 Silent p.V38V 0.14 TCGA-35-4122-01 2 163000563 163000563 C A GCG Missense_Mutation p.W170C 0.29 deleterious(0) probably_damaging(1) TCGA-35-4122-01 2 169020319 169020319 T C STK39 Missense_Mutation p.I168V 0.11 tolerated(0.77) benign(0.01) TCGA-35-4122-01 2 170007412 170007412 G T LRP2 Missense_Mutation p.L4196I 0.23 possibly_damaging(0.864) TCGA-35-4122-01 2 170359635 170359635 C T BBS5 Nonsense_Mutation p.Q283* 0.35 TCGA-35-4122-01 2 172966302 172966302 A C DLX2 Missense_Mutation p.I158S 0.07 deleterious(0) probably_damaging(0.998) TCGA-35-4122-01 2 176794913 176794913 C A KIAA1715 Missense_Mutation p.D357Y 0.07 deleterious(0) possibly_damaging(0.462) TCGA-35-4122-01 2 179453980 179453980 A T TTN Silent p.A20824A 0.09 TCGA-35-4122-01 2 197028050 197028050 G C STK17B Missense_Mutation p.Q20E 0.06 tolerated(0.16) benign(0.137) TCGA-35-4122-01 2 201950245 201950245 T C NDUFB3 Silent p.F68F 0.23 TCGA-35-4122-01 2 209309587 209309587 G A PTH2R Silent p.L276L 0.09 TCGA-35-4122-01 2 211447431 211447431 A G CPS1 Missense_Mutation p.K213E 0.16 deleterious(0.01) possibly_damaging(0.481) TCGA-35-4122-01 2 216284104 216284104 T A FN1 Missense_Mutation p.Q560H 0.06 deleterious(0.01) possibly_damaging(0.6) TCGA-35-4122-01 2 227659915 227659915 T C IRS1 Missense_Mutation p.I1180M 0.11 deleterious(0) probably_damaging(0.991) TCGA-35-4122-01 2 242054368 242054368 G C PASK Intron 0.05 TCGA-35-4122-01 2 24222558 24222558 G C UBXN2A Missense_Mutation p.D201H 0.10 tolerated(0.06) probably_damaging(0.996) TCGA-35-4122-01 2 27855515 27855515 G A GPN1 Missense_Mutation p.E124K 0.07 deleterious(0.02) benign(0.1) TCGA-35-4122-01 2 29295088 29295088 C T C2orf71 Silent p.Q680Q 0.36 TCGA-35-4122-01 2 48026387 48026387 A G MSH6 Missense_Mutation p.D422G 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-35-4122-01 2 48915895 48915895 T C LHCGR Silent p.P347P 0.14 TCGA-35-4122-01 2 61705820 61705820 A C XPO1 3'UTR 0.23 TCGA-35-4122-01 2 74441241 74441241 C A MTHFD2 Missense_Mutation p.P309T 0.06 deleterious(0) probably_damaging(1) TCGA-35-4122-01 2 74682700 74682700 G A INO80B Missense_Mutation p.G76R 0.07 deleterious(0) probably_damaging(0.999) TCGA-35-4122-01 2 79313951 79313951 C A REG1B Missense_Mutation p.W57L 0.09 deleterious(0) possibly_damaging(0.888) TCGA-35-4122-01 2 86378641 86378641 C G IMMT Missense_Mutation p.D394H 0.06 deleterious(0.02) possibly_damaging(0.617) TCGA-35-4122-01 3 105400605 105400605 C T CBLB Silent p.K753K 0.12 TCGA-35-4122-01 3 119013825 119013825 A G ARHGAP31 Missense_Mutation p.E25G 0.13 deleterious(0) possibly_damaging(0.606) TCGA-35-4122-01 3 128696922 128696922 T C KIAA1257 Silent p.Q258Q 0.08 TCGA-35-4122-01 3 131100998 131100998 G A NUDT16 Missense_Mutation p.E83K 0.10 tolerated_low_confidence(0.27) benign(0.206) TCGA-35-4122-01 3 132056351 132056351 G C ACPP Missense_Mutation p.E170Q 0.16 deleterious(0) probably_damaging(0.918) TCGA-35-4122-01 3 151166370 151166370 G T IGSF10 Missense_Mutation p.P467T 0.14 tolerated(0.15) benign(0.291) TCGA-35-4122-01 3 164906248 164906248 G T SLITRK3 Missense_Mutation p.L791I 0.22 tolerated(0.26) benign(0.007) TCGA-35-4122-01 3 183493769 183493769 G C YEATS2 Missense_Mutation p.G812A 0.16 tolerated_low_confidence(1) benign(0.002) TCGA-35-4122-01 3 184910072 184910072 C - EHHADH Frame_Shift_Del p.G705Efs*5 0.31 TCGA-35-4122-01 3 3084066 3084066 C T CNTN4 Missense_Mutation p.S824F 0.22 deleterious(0.05) possibly_damaging(0.454) TCGA-35-4122-01 3 44951740 44951740 A T TGM4 Missense_Mutation p.R496W 0.09 deleterious(0.01) probably_damaging(0.945) TCGA-35-4122-01 3 52546905 52546905 C T STAB1 Missense_Mutation p.A1030V 0.18 deleterious(0) probably_damaging(1) TCGA-35-4122-01 3 52816082 52816082 G T ITIH1 Splice_Site p.X271_splice 0.23 TCGA-35-4122-01 3 54959111 54959111 G T LRTM1 Missense_Mutation p.H47N 0.12 tolerated(0.56) benign(0.001) TCGA-35-4122-01 3 63981400 63981400 G A ATXN7 Silent p.A634A 0.35 TCGA-35-4122-01 3 69124610 69124610 C T UBA3 Missense_Mutation p.G79S 0.26 deleterious(0) probably_damaging(0.998) TCGA-35-4122-01 3 77666811 77666811 G T ROBO2 Missense_Mutation p.Q1163H 0.16 tolerated(0.45) benign(0.216) TCGA-35-4122-01 3 9785450 9785450 G C BRPF1 Missense_Mutation p.E834Q 0.20 tolerated(0.21) benign(0.173) TCGA-35-4122-01 4 138452918 138452918 C A PCDH18 Missense_Mutation p.D109Y 0.11 deleterious(0) probably_damaging(1) TCGA-35-4122-01 4 144116948 144116948 G T USP38 Missense_Mutation p.V300F 0.17 deleterious(0) possibly_damaging(0.813) TCGA-35-4122-01 4 164085484 164085484 G C NAF1 Missense_Mutation p.S142C 0.40 deleterious(0) probably_damaging(0.984) TCGA-35-4122-01 4 169336592 169336592 A T DDX60L Missense_Mutation p.H982Q 0.17 deleterious(0) possibly_damaging(0.835) TCGA-35-4122-01 4 170613432 170613432 C G CLCN3 Silent p.L299L 0.09 TCGA-35-4122-01 4 175899307 175899307 T A ADAM29 3'UTR 0.15 TCGA-35-4122-01 4 189012520 189012520 C G TRIML2 3'UTR 0.08 TCGA-35-4122-01 4 189065212 189065212 T C TRIML1 Missense_Mutation p.C261R 0.16 tolerated(0.21) possibly_damaging(0.634) TCGA-35-4122-01 4 20570537 20570537 G A SLIT2 Missense_Mutation p.D1000N 0.09 tolerated(0.08) probably_damaging(0.995) TCGA-35-4122-01 4 25831720 25831720 C G SEL1L3 Missense_Mutation p.S386T 0.12 tolerated(0.58) benign(0.004) TCGA-35-4122-01 4 30732466 30732466 C G PCDH7 Intron 0.17 TCGA-35-4122-01 4 38776144 38776144 G T TLR10 Silent p.A356A 0.10 TCGA-35-4122-01 4 48566058 48566058 T A FRYL Missense_Mutation p.N1168I 0.13 deleterious(0.03) benign(0.016) TCGA-35-4122-01 4 53751949 53751949 T C SCFD2 Missense_Mutation p.K643E 0.06 deleterious(0.01) possibly_damaging(0.876) TCGA-35-4122-01 4 62849254 62849254 G T LPHN3 Missense_Mutation p.G989W 0.11 deleterious(0.04) probably_damaging(1) TCGA-35-4122-01 4 76894544 76894544 T C SDAD1 Missense_Mutation p.I213V 0.08 tolerated(1) benign(0.012) TCGA-35-4122-01 4 79360062 79360062 A T FRAS1 Silent p.S1791S 0.15 TCGA-35-4122-01 4 79455668 79455668 C T FRAS1 Missense_Mutation p.T3664I 0.11 probably_damaging(0.999) TCGA-35-4122-01 5 13894780 13894780 C A DNAH5 Nonsense_Mutation p.E804* 0.18 TCGA-35-4122-01 5 140557774 140557774 G A PCDHB8 Silent p.L53L 0.09 TCGA-35-4122-01 5 140627391 140627391 T C PCDHB15 Missense_Mutation p.Y749H 0.04 deleterious_low_confidence(0.01) possibly_damaging(0.491) TCGA-35-4122-01 5 140812327 140812327 C G PCDHGA12 Missense_Mutation p.S667R 0.10 tolerated_low_confidence(0.07) benign(0.167) TCGA-35-4122-01 5 141020095 141020095 C - FCHSD1 3'UTR 0.11 TCGA-35-4122-01 5 15936565 15936565 C G FBXL7 Missense_Mutation p.S249C 0.10 tolerated(0.06) possibly_damaging(0.75) TCGA-35-4122-01 5 161580443 161580443 C A GABRG2 3'UTR 0.14 TCGA-35-4122-01 5 179228997 179228997 G - MGAT4B Frame_Shift_Del p.L39Sfs*2 0.10 TCGA-35-4122-01 5 179393914 179393914 C A RNF130 Missense_Mutation p.G348C 0.17 deleterious(0.01) benign(0.263) TCGA-35-4122-01 5 180377285 180377285 G C BTNL8 Missense_Mutation p.C415S 0.34 tolerated(0.12) benign(0.056) TCGA-35-4122-01 5 23518003 23518003 G T PRDM9 Missense_Mutation p.W105C 0.06 tolerated_low_confidence(0.19) benign(0) TCGA-35-4122-01 5 34867061 34867061 G T TTC23L Missense_Mutation p.V243F 0.30 deleterious(0) possibly_damaging(0.84) TCGA-35-4122-01 5 34867062 34867062 T A TTC23L Missense_Mutation p.V243D 0.30 deleterious(0) probably_damaging(0.936) TCGA-35-4122-01 5 40730417 40730417 C T TTC33 Missense_Mutation p.E84K 0.19 deleterious(0.01) benign(0.384) TCGA-35-4122-01 5 45645554 45645554 A G HCN1 Silent p.F194F 0.14 TCGA-35-4122-01 5 55412547 55412547 A C ANKRD55 Missense_Mutation p.L287W 0.16 deleterious(0.02) probably_damaging(1) TCGA-35-4122-01 5 59064319 59064319 C A PDE4D Intron 0.14 TCGA-35-4122-01 5 70308489 70308489 C A NAIP Missense_Mutation p.G85V 0.11 deleterious(0) probably_damaging(1) TCGA-35-4122-01 6 10410284 10410284 C G TFAP2A Silent p.T110T 0.10 TCGA-35-4122-01 6 108985209 108985209 G A FOXO3 Silent p.L391L 0.19 TCGA-35-4122-01 6 111697523 111697523 T C REV3L Missense_Mutation p.T679A 0.10 tolerated(0.06) benign(0.04) TCGA-35-4122-01 6 111737651 111737651 T C REV3L Missense_Mutation p.H55R 0.16 deleterious(0) probably_damaging(0.999) TCGA-35-4122-01 6 118596768 118596768 G T SLC35F1 Nonsense_Mutation p.G262* 0.14 TCGA-35-4122-01 6 12122960 12122960 A T HIVEP1 Nonsense_Mutation p.K978* 0.13 TCGA-35-4122-01 6 121605039 121605039 C A TBC1D32 Missense_Mutation p.D464Y 0.13 deleterious(0) possibly_damaging(0.905) TCGA-35-4122-01 6 136904872 136904872 C T MAP3K5 Missense_Mutation p.E1078K 0.09 deleterious(0.04) benign(0.325) TCGA-35-4122-01 6 137018361 137018361 A G MAP3K5 Missense_Mutation p.I324T 0.07 deleterious(0) probably_damaging(0.998) TCGA-35-4122-01 6 144812236 144812236 A G UTRN Missense_Mutation p.M1479V 0.07 tolerated(0.1) probably_damaging(0.968) TCGA-35-4122-01 6 150001145 150001145 T C LATS1 Missense_Mutation p.H820R 0.09 deleterious(0) probably_damaging(1) TCGA-35-4122-01 6 160932075 160932075 C T LPAL2 5'Flank 0.06 TCGA-35-4122-01 6 160968971 160968971 T C LPA Splice_Site p.X1719_splice 0.22 TCGA-35-4122-01 6 27925333 27925333 G T OR2B6 Silent p.L105L 0.11 TCGA-35-4122-01 6 3085519 3085519 A G RIPK1 Missense_Mutation p.M239V 0.09 tolerated(0.41) benign(0.004) TCGA-35-4122-01 6 33156855 33156855 C G COL11A2 Missense_Mutation p.E115Q 0.07 probably_damaging(0.981) TCGA-35-4122-01 6 33272134 33272134 T G TAPBP Missense_Mutation p.I384L 0.07 deleterious(0.03) benign(0.024) TCGA-35-4122-01 6 38120333 38120333 G T ZFAND3 3'UTR 0.20 TCGA-35-4122-01 6 42638433 42638433 G T UBR2 Missense_Mutation p.G1356C 0.18 deleterious(0) benign(0.15) TCGA-35-4122-01 6 42974720 42974720 G A PPP2R5D Missense_Mutation p.V132M 0.10 tolerated(0.39) benign(0.313) TCGA-35-4122-01 6 46661230 46661230 G A TDRD6 Missense_Mutation p.D1789N 0.10 tolerated(0.08) benign(0.045) TCGA-35-4122-01 6 66115212 66115212 C T EYS Nonsense_Mutation p.W304* 0.12 TCGA-35-4122-01 6 71298356 71298356 G T C6orf57 Missense_Mutation p.G86C 0.12 deleterious(0) probably_damaging(1) TCGA-35-4122-01 6 71298357 71298357 G T C6orf57 Missense_Mutation p.G86V 0.12 deleterious(0) probably_damaging(1) TCGA-35-4122-01 6 84269834 84269834 G T SNAP91 Missense_Mutation p.P874T 0.11 tolerated(0.06) probably_damaging(0.991) TCGA-35-4122-01 6 90572233 90572233 G T CASP8AP2 RNA 0.08 TCGA-35-4122-01 6 90572234 90572234 G T CASP8AP2 RNA 0.08 TCGA-35-4122-01 6 97677084 97677084 C A MMS22L Missense_Mutation p.M575I 0.08 tolerated(0.09) benign(0.006) TCGA-35-4122-01 7 111368372 111368372 G T DOCK4 Silent p.G1953G 0.18 TCGA-35-4122-01 7 111846828 111846828 G C ZNF277 Silent p.G19G 0.30 TCGA-35-4122-01 7 113558626 113558626 G T PPP1R3A Silent p.I142I 0.12 TCGA-35-4122-01 7 127235632 127235632 G T FSCN3 Missense_Mutation p.R139L 0.33 deleterious(0.03) benign(0.198) TCGA-35-4122-01 7 136938296 136938296 C G PTN Missense_Mutation p.E68D 0.11 deleterious(0.02) possibly_damaging(0.866) TCGA-35-4122-01 7 137308271 137308271 A G DGKI Silent p.S278S 0.28 TCGA-35-4122-01 7 137567363 137567363 T C CREB3L2 Missense_Mutation p.N428D 0.14 deleterious(0.03) probably_damaging(0.971) TCGA-35-4122-01 7 137792171 137792171 T A AKR1D1 Missense_Mutation p.S234T 0.11 tolerated(0.09) benign(0.002) TCGA-35-4122-01 7 137792172 137792172 C G AKR1D1 Missense_Mutation p.S234C 0.12 deleterious(0) possibly_damaging(0.648) TCGA-35-4122-01 7 140402688 140402688 G C NDUFB2 Missense_Mutation p.E41Q 0.13 tolerated(0.14) benign(0.039) TCGA-35-4122-01 7 141408408 141408408 G A WEE2 5'UTR 0.18 TCGA-35-4122-01 7 142881086 142881086 C T TAS2R39 Missense_Mutation p.S192F 0.07 tolerated(0.8) benign(0.049) TCGA-35-4122-01 7 15652162 15652162 C A MEOX2 Silent p.R255R 0.17 TCGA-35-4122-01 7 19738178 19738178 C A TWISTNB Missense_Mutation p.A260S 0.17 tolerated(0.2) benign(0.009) TCGA-35-4122-01 7 20685435 20685435 G T ABCB5 Silent p.V245V 0.20 TCGA-35-4122-01 7 23509712 23509712 G T IGF2BP3 Silent p.I6I 0.19 TCGA-35-4122-01 7 38725603 38725603 C T FAM183B Translation_Start_Site p.M1? 0.09 deleterious(0.01) benign(0.246) TCGA-35-4122-01 7 4965101 4965101 G A MMD2 Missense_Mutation p.A37V 0.09 deleterious(0) probably_damaging(0.982) TCGA-35-4122-01 7 55863471 55863471 A C SEPT14 3'UTR 0.25 TCGA-35-4122-01 7 70236556 70236556 G T AUTS2 Missense_Mutation p.A586S 0.13 tolerated(0.21) possibly_damaging(0.802) TCGA-35-4122-01 7 7612858 7612858 G - MIOS Frame_Shift_Del p.D252Ifs*10 0.23 TCGA-35-4122-01 7 99705159 99705159 C T TAF6 Missense_Mutation p.V619I 0.06 tolerated_low_confidence(0.1) probably_damaging(0.939) TCGA-35-4122-01 8 13356859 13356859 G T DLC1 Missense_Mutation p.P241H 0.13 deleterious_low_confidence(0.02) possibly_damaging(0.759) TCGA-35-4122-01 8 144890968 144890968 G C SCRIB Silent p.P642P 0.26 TCGA-35-4122-01 8 145742036 145742036 C T RECQL4 Missense_Mutation p.S156N 0.11 tolerated(0.29) benign(0.009) TCGA-35-4122-01 8 25902344 25902344 C T EBF2 Missense_Mutation p.G11E 0.11 deleterious_low_confidence(0.03) benign(0.038) TCGA-35-4122-01 8 36641964 36641964 A G KCNU1 Silent p.E12E 0.09 TCGA-35-4122-01 8 36766921 36766921 C A KCNU1 Missense_Mutation p.N733K 0.08 deleterious(0) probably_damaging(0.989) TCGA-35-4122-01 8 42693223 42693223 C T THAP1 Missense_Mutation p.R175Q 0.16 tolerated(0.07) possibly_damaging(0.57) TCGA-35-4122-01 8 54714430 54714430 G A ATP6V1H Silent p.A202A 0.07 TCGA-35-4122-01 8 56879313 56879313 T C LYN Missense_Mutation p.L277P 0.19 deleterious(0) probably_damaging(1) TCGA-35-4122-01 8 61121321 61121321 A G CA8 3'UTR 0.17 TCGA-35-4122-01 8 72987658 72987658 G A TRPA1 5'UTR 0.17 TCGA-35-4122-01 8 77764222 77764222 C G ZFHX4 Missense_Mutation p.Q1689E 0.24 benign(0.001) TCGA-35-4122-01 8 77766190 77766190 G A ZFHX4 Missense_Mutation p.D2345N 0.07 benign(0.335) TCGA-35-4122-01 8 82439309 82439309 C A FABP12 Missense_Mutation p.W98C 0.14 deleterious(0) probably_damaging(1) TCGA-35-4122-01 8 87060752 87060752 C A PSKH2 Missense_Mutation p.R366M 0.14 deleterious(0) possibly_damaging(0.533) TCGA-35-4122-01 9 117849201 117849201 C T TNC Missense_Mutation p.C270Y 0.13 deleterious(0) probably_damaging(1) TCGA-35-4122-01 9 124116915 124116915 A G STOM Silent p.L68L 0.04 TCGA-35-4122-01 9 125004274 125004274 C G RBM18 Silent p.A154A 0.25 TCGA-35-4122-01 9 126641232 126641232 G A DENND1A Missense_Mutation p.S29L 0.16 deleterious(0.05) benign(0.044) TCGA-35-4122-01 9 128697856 128697856 G C PBX3 Silent p.L271L 0.27 TCGA-35-4122-01 9 130507147 130507147 T G SH2D3C Missense_Mutation p.Q499P 0.11 tolerated(0.22) benign(0.224) TCGA-35-4122-01 9 137774413 137774413 A G FCN2 Missense_Mutation p.I48V 0.22 tolerated(0.23) benign(0.361) TCGA-35-4122-01 9 15177755 15177755 C A TTC39B Missense_Mutation p.C594F 0.16 deleterious(0) probably_damaging(1) TCGA-35-4122-01 9 18941806 18941806 C G FAM154A Missense_Mutation p.V84L 0.09 tolerated(1) benign(0.052) TCGA-35-4122-01 9 19380082 19380082 C G RPS6 Intron 0.10 TCGA-35-4122-01 9 2635500 2635500 C T VLDLR Missense_Mutation p.R44C 0.27 deleterious(0) probably_damaging(0.992) TCGA-35-4122-01 9 32630923 32630923 T C TAF1L Missense_Mutation p.N1552S 0.16 tolerated(0.08) benign(0.313) TCGA-35-4122-01 9 34255868 34255868 C G KIF24 Missense_Mutation p.C1246S 0.12 tolerated(0.34) benign(0.055) TCGA-35-4122-01 9 34256307 34256307 C G KIF24 Missense_Mutation p.E1100Q 0.18 deleterious(0.02) benign(0.393) TCGA-35-4122-01 9 35752769 35752769 A G RGP1 Silent p.V358V 0.20 TCGA-35-4122-01 9 79320297 79320297 G A PRUNE2 Missense_Mutation p.A2298V 0.22 tolerated(0.07) benign(0.426) TCGA-35-4122-01 9 79634737 79634737 G A FOXB2 Missense_Mutation p.R56H 0.19 deleterious(0) unknown(0) TCGA-35-4122-01 9 84608828 84608828 C T SPATA31D1 Missense_Mutation p.P1148L 0.12 tolerated(0.39) possibly_damaging(0.899) TCGA-35-4122-01 X 100531506 100531506 C T TAF7L Missense_Mutation p.M320I 0.31 tolerated(0.4) benign(0.01) TCGA-35-4122-01 X 100807894 100807894 A G ARMCX1 5'UTR 0.09 TCGA-35-4122-01 X 105153552 105153552 T C NRK Missense_Mutation p.I641T 0.42 deleterious(0) benign(0.116) TCGA-35-4122-01 X 106221360 106221360 G A MORC4 Missense_Mutation p.H336Y 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-35-4122-01 X 128694569 128694569 T A OCRL Missense_Mutation p.D255E 0.24 tolerated(0.29) probably_damaging(0.92) TCGA-35-4122-01 X 130412660 130412660 T G IGSF1 Missense_Mutation p.K611Q 0.17 tolerated(0.19) possibly_damaging(0.543) TCGA-35-4122-01 X 1325341 1325341 A G CRLF2 Missense_Mutation p.W112R 0.04 tolerated(0.11) benign(0.331) TCGA-35-4122-01 X 1325460 1325460 G C CRLF2 Missense_Mutation p.T72S 0.05 tolerated(0.91) benign(0.047) TCGA-35-4122-01 X 135638770 135638770 T C VGLL1 3'UTR 0.17 TCGA-35-4122-01 X 155004005 155004005 T A SPRY3 Missense_Mutation p.C158S 0.13 deleterious(0) probably_damaging(1) TCGA-35-4122-01 X 155227421 155227421 T C IL9R 5'UTR 0.08 TCGA-35-4122-01 X 51151406 51151406 C T CXorf67 3'UTR 0.39 TCGA-35-4122-01 X 53585707 53585707 C A HUWE1 Missense_Mutation p.R2690L 0.34 benign(0.25) TCGA-35-4122-01 X 57318978 57318978 C T FAAH2 Silent p.D80D 0.35 TCGA-35-4122-01 X 70462880 70462880 T A ZMYM3 Missense_Mutation p.T1163S 0.16 tolerated(0.07) probably_damaging(0.97) TCGA-35-4122-01 X 76763965 76763965 G T ATRX Missense_Mutation p.P2448H 0.16 probably_damaging(0.989) TCGA-35-4122-01 X 89177451 89177451 G T TGIF2LX Missense_Mutation p.G123C 0.19 tolerated(0.21) possibly_damaging(0.615) TCGA-35-4122-01 Y 4925348 4925348 G T PCDH11Y Nonsense_Mutation p.E162* 0.29 TCGA-35-4123-01 10 101982738 101982738 C A CHUK Splice_Site p.X67_splice 0.22 TCGA-35-4123-01 10 108459106 108459106 C - SORCS1 Frame_Shift_Del p.V427Sfs*40 0.19 TCGA-35-4123-01 10 121691670 121691670 G C SEC23IP Missense_Mutation p.M866I 0.12 deleterious(0.01) benign(0.141) TCGA-35-4123-01 10 121691671 121691671 G T SEC23IP Nonsense_Mutation p.G867* 0.13 TCGA-35-4123-01 10 16867009 16867009 G T CUBN Missense_Mutation p.R3613S 0.25 tolerated(0.47) benign(0.03) TCGA-35-4123-01 10 31809806 31809806 A C ZEB1 Missense_Mutation p.K516Q 0.24 tolerated(0.23) possibly_damaging(0.893) TCGA-35-4123-01 10 35333791 35333791 C A CUL2 Missense_Mutation p.R190L 0.14 deleterious(0) benign(0.365) TCGA-35-4123-01 10 35333797 35333797 C A CUL2 Splice_Site p.X188_splice 0.13 TCGA-35-4123-01 10 53458658 53458658 C A CSTF2T Missense_Mutation p.G218C 0.18 deleterious(0.01) possibly_damaging(0.536) TCGA-35-4123-01 10 53822338 53822338 C A PRKG1 Silent p.V294V 0.14 TCGA-35-4123-01 10 64945331 64945331 C A JMJD1C Missense_Mutation p.M2274I 0.15 deleterious(0.01) probably_damaging(0.989) TCGA-35-4123-01 10 64952769 64952769 G A JMJD1C Missense_Mutation p.P2002L 0.16 deleterious(0.01) probably_damaging(0.928) TCGA-35-4123-01 10 72291088 72291088 C A PALD1 Missense_Mutation p.L171M 0.19 deleterious(0) probably_damaging(0.993) TCGA-35-4123-01 10 7759586 7759586 T C ITIH2 Intron 0.19 TCGA-35-4123-01 10 84498364 84498364 G A NRG3 Missense_Mutation p.D329N 0.18 tolerated(0.06) probably_damaging(0.91) TCGA-35-4123-01 10 95380423 95380423 C A PDE6C Missense_Mutation p.T172N 0.13 deleterious(0) probably_damaging(1) TCGA-35-4123-01 10 95394518 95394518 G T PDE6C Nonsense_Mutation p.G375* 0.16 TCGA-35-4123-01 10 99991416 99991416 G T R3HCC1L Missense_Mutation p.D645Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-35-4123-01 11 101353723 101353723 G T TRPC6 Silent p.S489S 0.18 TCGA-35-4123-01 11 102576439 102576439 G T MMP27 Missense_Mutation p.R3S 0.18 tolerated(1) benign(0) TCGA-35-4123-01 11 102818698 102818698 T C MMP13 Missense_Mutation p.E378G 0.07 tolerated(0.11) benign(0.01) TCGA-35-4123-01 11 106810239 106810239 G A GUCY1A2 Missense_Mutation p.P385S 0.12 tolerated(0.37) possibly_damaging(0.544) TCGA-35-4123-01 11 110108242 110108242 T A RDX Missense_Mutation p.D409V 0.24 deleterious(0.04) possibly_damaging(0.589) TCGA-35-4123-01 11 113803683 113803683 G T HTR3B Silent p.L188L 0.20 TCGA-35-4123-01 11 117864126 117864126 G C IL10RA Splice_Site p.X179_splice 0.22 TCGA-35-4123-01 11 124310583 124310583 C A OR8B8 Missense_Mutation p.M133I 0.11 deleterious_low_confidence(0.02) benign(0.001) TCGA-35-4123-01 11 133790344 133790344 C A IGSF9B Silent p.P1092P 0.27 TCGA-35-4123-01 11 134022833 134022833 C T NCAPD3 3'UTR 0.14 TCGA-35-4123-01 11 15198682 15198682 G C INSC Missense_Mutation p.C190S 0.11 deleterious(0.01) possibly_damaging(0.609) TCGA-35-4123-01 11 22696347 22696347 G C GAS2 Intron 0.13 TCGA-35-4123-01 11 24998134 24998134 C A LUZP2 Intron 0.26 TCGA-35-4123-01 11 299433 299433 C A IFITM5 Missense_Mutation p.A20S 0.18 tolerated(0.62) benign(0.016) TCGA-35-4123-01 11 4103493 4103493 G T STIM1 Missense_Mutation p.W350L 0.25 deleterious(0.01) probably_damaging(0.994) TCGA-35-4123-01 11 4608223 4608223 C A OR52I2 Missense_Mutation p.L61M 0.17 deleterious(0) benign(0.213) TCGA-35-4123-01 11 55111191 55111191 T C OR4A16 Missense_Mutation p.I172T 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.461) TCGA-35-4123-01 11 5566115 5566115 C A OR52H1 Missense_Mutation p.M213I 0.17 deleterious(0.05) benign(0.363) TCGA-35-4123-01 11 55798258 55798258 C T OR5AS1 Missense_Mutation p.R122C 0.13 deleterious(0.02) benign(0.091) TCGA-35-4123-01 11 56086598 56086598 G T OR8K3 Silent p.V272V 0.11 TCGA-35-4123-01 11 56468505 56468505 G T OR9G1 Silent p.L214L 0.12 TCGA-35-4123-01 11 57080697 57080697 C A TNKS1BP1 Missense_Mutation p.V489L 0.24 tolerated(0.06) benign(0.017) TCGA-35-4123-01 11 5776387 5776387 C A OR52N4 Silent p.T139T 0.18 TCGA-35-4123-01 11 58391556 58391556 G T CNTF Missense_Mutation p.G55V 0.20 deleterious(0) probably_damaging(1) TCGA-35-4123-01 11 59224871 59224871 G A OR4D6 Silent p.V146V 0.12 TCGA-35-4123-01 11 5969347 5969347 C A OR56A3 Silent p.T257T 0.20 TCGA-35-4123-01 11 59814626 59814626 T C OOSP2 3'UTR 0.22 TCGA-35-4123-01 11 6239874 6239874 T A FAM160A2 Missense_Mutation p.H464L 0.16 tolerated(0.49) benign(0.006) TCGA-35-4123-01 11 64390552 64390552 T A NRXN2 Splice_Site p.X1283_splice 0.20 TCGA-35-4123-01 11 64418893 64418893 C A NRXN2 Missense_Mutation p.D918Y 0.13 deleterious(0) probably_damaging(0.984) TCGA-35-4123-01 11 6806979 6806979 C A OR2AG1 Silent p.A237A 0.21 TCGA-35-4123-01 11 69063537 69063537 G T MYEOV Missense_Mutation p.G207V 0.18 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-35-4123-01 11 70118299 70118299 G T PPFIA1 Silent p.P7P 0.17 TCGA-35-4123-01 11 86106346 86106346 A G CCDC81 Intron 0.22 TCGA-35-4123-01 11 88583262 88583262 G T GRM5 Nonsense_Mutation p.C241* 0.17 TCGA-35-4123-01 11 92086706 92086706 G T FAT3 Silent p.L476L 0.26 TCGA-35-4123-01 11 92616483 92616483 C G FAT3 Silent p.P4287P 0.10 TCGA-35-4123-01 11 9534020 9534020 G T ZNF143 Silent p.G467G 0.20 TCGA-35-4123-01 12 101436171 101436171 T A ANO4 Missense_Mutation p.M325K 0.22 deleterious(0) possibly_damaging(0.804) TCGA-35-4123-01 12 102512147 102512147 C A NUP37 Silent p.T50T 0.19 TCGA-35-4123-01 12 103238194 103238194 C A PAH Missense_Mutation p.V329L 0.23 deleterious(0) possibly_damaging(0.785) TCGA-35-4123-01 12 107075814 107075814 G T RFX4 Missense_Mutation p.G129V 0.13 deleterious(0) probably_damaging(0.944) TCGA-35-4123-01 12 107914368 107914368 G T BTBD11 Nonsense_Mutation p.E414* 0.18 TCGA-35-4123-01 12 11174543 11174543 G A TAS2R19 Missense_Mutation p.R210W 0.22 deleterious(0) possibly_damaging(0.846) TCGA-35-4123-01 12 129566310 129566310 G T TMEM132D Silent p.T639T 0.13 TCGA-35-4123-01 12 13232874 13232874 C G KIAA1467 Silent p.T598T 0.15 TCGA-35-4123-01 12 21370190 21370190 A C SLCO1B1 Missense_Mutation p.L545F 0.21 tolerated(0.65) benign(0.008) TCGA-35-4123-01 12 32949210 32949210 C G PKP2 Missense_Mutation p.L774F 0.13 deleterious(0) probably_damaging(0.937) TCGA-35-4123-01 12 33592511 33592511 C A SYT10 5'UTR 0.15 TCGA-35-4123-01 12 3677879 3677879 C A PRMT8 Silent p.T163T 0.15 TCGA-35-4123-01 12 40076706 40076706 T A C12orf40 Missense_Mutation p.M327K 0.11 deleterious(0.03) possibly_damaging(0.466) TCGA-35-4123-01 12 40076707 40076707 G T C12orf40 Missense_Mutation p.M327I 0.11 tolerated(0.13) benign(0.023) TCGA-35-4123-01 12 43862482 43862482 C A ADAMTS20 Missense_Mutation p.D382Y 0.12 deleterious(0) probably_damaging(0.998) TCGA-35-4123-01 12 48920047 48920047 C T OR8S1 Silent p.F211F 0.21 TCGA-35-4123-01 12 50472281 50472281 C T ASIC1 Silent p.Y305Y 0.03 TCGA-35-4123-01 12 51382191 51382191 T C SLC11A2 Missense_Mutation p.M564V 0.22 tolerated(0.67) benign(0.002) TCGA-35-4123-01 12 52793777 52793777 G T KRT82 Missense_Mutation p.Q312K 0.18 deleterious(0.05) benign(0.259) TCGA-35-4123-01 12 53069297 53069297 A T KRT1 Missense_Mutation p.Y539N 0.30 tolerated(0.16) unknown(0) TCGA-35-4123-01 12 53494882 53494882 C A IGFBP6 Silent p.R180R 0.18 TCGA-35-4123-01 12 55615132 55615132 C A OR10A7 Silent p.G108G 0.12 TCGA-35-4123-01 12 5603704 5603704 C A NTF3 Missense_Mutation p.D121E 0.18 tolerated(0.66) benign(0.017) TCGA-35-4123-01 12 58165850 58165856 CGAGTCT - METTL1 Frame_Shift_Del p.E4Gfs*34 0.39 TCGA-35-4123-01 12 70004184 70004184 G T LRRC10 Silent p.L145L 0.14 TCGA-35-4123-01 12 70087526 70087526 G T BEST3 Missense_Mutation p.L137M 0.15 deleterious(0.01) probably_damaging(0.957) TCGA-35-4123-01 12 7531644 7531644 C A CD163L1 Missense_Mutation p.W767C 0.17 deleterious(0) probably_damaging(1) TCGA-35-4123-01 12 85521630 85521630 A T LRRIQ1 Missense_Mutation p.Q1343L 0.31 deleterious(0) probably_damaging(1) TCGA-35-4123-01 12 96387882 96387882 G A HAL Missense_Mutation p.R133C 0.22 tolerated(0.09) possibly_damaging(0.65) TCGA-35-4123-01 13 29005449 29005449 T C FLT1 Splice_Site p.X272_splice 0.14 TCGA-35-4123-01 13 41654797 41654797 A C WBP4 Missense_Mutation p.S258R 0.09 tolerated(0.13) benign(0) TCGA-35-4123-01 13 58207776 58207776 C T PCDH17 Missense_Mutation p.P366S 0.12 deleterious(0.04) probably_damaging(0.938) TCGA-35-4123-01 13 76427505 76427505 G T LMO7 Missense_Mutation p.G1315C 0.21 deleterious(0.05) probably_damaging(0.966) TCGA-35-4123-01 13 84454311 84454311 C A SLITRK1 Silent p.A444A 0.22 TCGA-35-4123-01 13 84455094 84455094 G C SLITRK1 Missense_Mutation p.D183E 0.17 deleterious(0) probably_damaging(1) TCGA-35-4123-01 14 100182493 100182493 C T CYP46A1 Silent p.D288D 0.16 TCGA-35-4123-01 14 105692627 105692627 G A BRF1 Missense_Mutation p.L306F 0.29 deleterious(0.04) benign(0.03) TCGA-35-4123-01 14 106110951 106110951 G T IGHG2 Silent p.S59S 0.09 TCGA-35-4123-01 14 106110952 106110952 G T IGHG2 Missense_Mutation p.S59Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-35-4123-01 14 20586080 20586080 G A OR4K17 Missense_Mutation p.C172Y 0.13 deleterious(0) probably_damaging(1) TCGA-35-4123-01 14 21269741 21269741 T ATACC RNASE1 3'UTR 0.21 TCGA-35-4123-01 14 21458132 21458132 T A METTL17 5'Flank 0.13 TCGA-35-4123-01 14 21790024 21790024 G A RPGRIP1 Silent p.E541E 0.13 TCGA-35-4123-01 14 23794376 23794376 G T PABPN1 Intron 0.15 TCGA-35-4123-01 14 63246542 63246542 G T KCNH5 Silent p.I641I 0.30 TCGA-35-4123-01 14 77709294 77709294 A T TMEM63C Silent p.A412A 0.15 TCGA-35-4123-01 14 88729781 88729781 A T KCNK10 Missense_Mutation p.V56E 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.584) TCGA-35-4123-01 14 95090210 95090210 T A SERPINA3 3'UTR 0.30 TCGA-35-4123-01 15 28171326 28171326 T C OCA2 Missense_Mutation p.R676G 0.23 deleterious(0) probably_damaging(0.995) TCGA-35-4123-01 15 43027805 43027805 C G CDAN1 Silent p.R282R 0.23 TCGA-35-4123-01 15 60641388 60641388 C T ANXA2 Silent p.G300G 0.25 TCGA-35-4123-01 15 62174899 62174899 G T VPS13C Missense_Mutation p.P3174T 0.28 deleterious(0) probably_damaging(1) TCGA-35-4123-01 15 65621153 65621153 G A IGDCC3 3'UTR 0.28 TCGA-35-4123-01 16 10031897 10031897 T G GRIN2A Missense_Mutation p.K309T 0.10 tolerated(0.05) benign(0.018) TCGA-35-4123-01 16 11016071 11016071 G T CIITA Missense_Mutation p.R1066L 0.17 tolerated(0.14) benign(0.012) TCGA-35-4123-01 16 20370695 20370695 C A PDILT Missense_Mutation p.K567N 0.25 tolerated_low_confidence(0.06) unknown(0) TCGA-35-4123-01 16 32894028 32894028 G A RP11-989E6.3 5'Flank 0.18 TCGA-35-4123-01 16 71007834 71007834 G T HYDIN Silent p.A1709A 0.14 TCGA-35-4123-01 16 76573654 76573654 G T CNTNAP4 Nonsense_Mutation p.E1014* 0.30 TCGA-35-4123-01 16 77331205 77331205 C A ADAMTS18 Missense_Mutation p.A928S 0.17 tolerated(0.12) benign(0.007) TCGA-35-4123-01 17 10253943 10253943 C T MYH13 Silent p.V358V 0.27 TCGA-35-4123-01 17 10408603 10408603 G T MYH1 Missense_Mutation p.A771D 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-35-4123-01 17 1936926 1936926 G T DPH1 Missense_Mutation p.R68S 0.15 deleterious(0) probably_damaging(0.997) TCGA-35-4123-01 17 26851543 26851543 C T FOXN1 Missense_Mutation p.S49L 0.04 deleterious_low_confidence(0.03) benign(0.088) TCGA-35-4123-01 17 33319679 33319679 G T LIG3 Missense_Mutation p.A475S 0.18 tolerated(0.07) possibly_damaging(0.719) TCGA-35-4123-01 17 34859855 34859855 C A MYO19 Silent p.L637L 0.24 TCGA-35-4123-01 17 35742976 35742976 G C C17orf78 Missense_Mutation p.V141L 0.16 deleterious(0.02) benign(0.164) TCGA-35-4123-01 17 39974501 39974501 C A FKBP10 Silent p.T184T 0.17 TCGA-35-4123-01 17 4701416 4701416 C A PSMB6 Missense_Mutation p.T182N 0.09 tolerated(0.2) benign(0.008) TCGA-35-4123-01 17 48680470 48680470 A G CACNA1G Missense_Mutation p.D1360G 0.06 deleterious(0.01) probably_damaging(0.985) TCGA-35-4123-01 17 56283513 56283513 C A MKS1 Missense_Mutation p.R536L 0.22 deleterious(0) probably_damaging(0.971) TCGA-35-4123-01 17 70120440 70120440 C G SOX9 Missense_Mutation p.A481G 0.12 tolerated(0.26) probably_damaging(0.969) TCGA-35-4123-01 17 7578492 7578492 C T TP53 Nonsense_Mutation p.W146* 0.28 TCGA-35-4123-01 17 8350154 8350154 A G NDEL1 Missense_Mutation p.K108R 0.28 tolerated(0.36) probably_damaging(0.98) TCGA-35-4123-01 17 9674801 9674801 G A DHRS7C 3'UTR 0.20 TCGA-35-4123-01 17 9674802 9674802 C G DHRS7C 3'UTR 0.20 TCGA-35-4123-01 18 14763929 14763929 A G ANKRD30B Silent p.K355K 0.16 TCGA-35-4123-01 18 21441624 21441624 G A LAMA3 Silent p.L1479L 0.15 TCGA-35-4123-01 18 28979469 28979469 A G DSG4 Missense_Mutation p.I414V 0.16 tolerated(0.25) benign(0.006) TCGA-35-4123-01 18 29340603 29340603 C A SLC25A52 Nonsense_Mutation p.E18* 0.14 TCGA-35-4123-01 18 42530189 42530189 G T SETBP1 Missense_Mutation p.S295I 0.21 tolerated(0.19) benign(0.326) TCGA-35-4123-01 18 61323052 61323052 C G SERPINB3 Missense_Mutation p.E338Q 0.18 deleterious(0) probably_damaging(0.998) TCGA-35-4123-01 18 72346333 72346333 A T ZNF407 Nonsense_Mutation p.K1120* 0.14 TCGA-35-4123-01 19 10132321 10132321 G T RDH8 Missense_Mutation p.V298L 0.31 tolerated(0.13) benign(0.03) TCGA-35-4123-01 19 15769365 15769365 G A CYP4F3 Silent p.E438E 0.18 TCGA-35-4123-01 19 18507413 18507413 C G LRRC25 Missense_Mutation p.E121Q 0.22 tolerated(0.45) benign(0.004) TCGA-35-4123-01 19 19334856 19334856 C A NCAN Silent p.R168R 0.17 TCGA-35-4123-01 19 22157392 22157392 G T ZNF208 Silent p.G148G 0.23 TCGA-35-4123-01 19 31040159 31040159 C T ZNF536 Silent p.P1211P 0.11 TCGA-35-4123-01 19 31767880 31767880 C A TSHZ3 Missense_Mutation p.G940V 0.14 deleterious(0) probably_damaging(0.989) TCGA-35-4123-01 19 38939038 38939038 C T RYR1 Missense_Mutation p.R282W 0.16 probably_damaging(0.997) TCGA-35-4123-01 19 3985437 3985437 G A EEF2 5'UTR 0.20 TCGA-35-4123-01 19 40097972 40097972 G T LGALS13 Missense_Mutation p.C138F 0.28 deleterious(0.03) benign(0.15) TCGA-35-4123-01 19 43763160 43763160 G T PSG9 Missense_Mutation p.S279R 0.21 tolerated(0.38) benign(0.188) TCGA-35-4123-01 19 44732552 44732552 G C ZNF227 Intron 0.23 TCGA-35-4123-01 19 45206812 45206812 T A CEACAM16 Silent p.P77P 0.21 TCGA-35-4123-01 19 53855116 53855116 A T ZNF845 Silent p.S396S 0.06 TCGA-35-4123-01 19 55512301 55512301 C T NLRP2 3'UTR 0.29 TCGA-35-4123-01 19 57876262 57876262 G C TRAPPC2P1 Missense_Mutation p.E21Q 0.07 deleterious(0.01) probably_damaging(0.933) TCGA-35-4123-01 19 9048356 9048356 G T MUC16 Missense_Mutation p.P11092H 0.19 benign(0.027) TCGA-35-4123-01 19 9225999 9225999 G T OR7G1 Silent p.L147L 0.33 TCGA-35-4123-01 1 100533603 100533603 G A HIAT1 Missense_Mutation p.G186E 0.12 deleterious(0) possibly_damaging(0.881) TCGA-35-4123-01 1 100964529 100964529 A G CDC14A Missense_Mutation p.N489S 0.06 tolerated_low_confidence(0.5) benign(0.004) TCGA-35-4123-01 1 110293311 110293311 G A EPS8L3 Missense_Mutation p.R582W 0.26 deleterious(0) probably_damaging(0.993) TCGA-35-4123-01 1 110882449 110882449 G T RBM15 Missense_Mutation p.R141L 0.26 tolerated_low_confidence(0.82) benign(0.012) TCGA-35-4123-01 1 11270888 11270888 T C MTOR Missense_Mutation p.I1213V 0.20 tolerated(1) benign(0.001) TCGA-35-4123-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.32 deleterious(0.01) benign(0.045) TCGA-35-4123-01 1 117561104 117561104 A C CD101 Silent p.R647R 0.33 TCGA-35-4123-01 1 12919588 12919588 G T PRAMEF2 Nonsense_Mutation p.E110* 0.20 TCGA-35-4123-01 1 150601933 150601933 T C ENSA Missense_Mutation p.Q5R 0.12 tolerated_low_confidence(0.05) benign(0.332) TCGA-35-4123-01 1 152284188 152284188 G T FLG Silent p.V1058V 0.33 TCGA-35-4123-01 1 158517140 158517140 G C OR6Y1 Silent p.V252V 0.09 TCGA-35-4123-01 1 158636191 158636191 G C SPTA1 Missense_Mutation p.S712C 0.28 deleterious(0) probably_damaging(0.988) TCGA-35-4123-01 1 158656379 158656379 G T SPTA1 5'UTR 0.27 TCGA-35-4123-01 1 158656380 158656380 G C SPTA1 5'UTR 0.27 TCGA-35-4123-01 1 158746816 158746816 C T OR6N2 Missense_Mutation p.A204T 0.10 tolerated(0.05) possibly_damaging(0.515) TCGA-35-4123-01 1 161123809 161123809 C T UFC1 Missense_Mutation p.R8C 0.16 deleterious(0.01) possibly_damaging(0.907) TCGA-35-4123-01 1 162748381 162748381 T A DDR2 Silent p.T765T 0.14 TCGA-35-4123-01 1 167038228 167038228 C T GPA33 Missense_Mutation p.E116K 0.35 tolerated(0.13) probably_damaging(0.983) TCGA-35-4123-01 1 169660891 169660891 A T SELL 3'UTR 0.47 TCGA-35-4123-01 1 170508612 170508612 A G GORAB Missense_Mutation p.K133R 0.29 tolerated(1) benign(0.002) TCGA-35-4123-01 1 170513848 170513848 C T GORAB Missense_Mutation p.S200F 0.09 deleterious(0) probably_damaging(0.995) TCGA-35-4123-01 1 17723578 17723578 A G PADI6 RNA 0.12 TCGA-35-4123-01 1 17723626 17723626 G C PADI6 RNA 0.21 TCGA-35-4123-01 1 17983154 17983154 G A ARHGEF10L Silent p.L937L 0.15 TCGA-35-4123-01 1 19444381 19444381 A C UBR4 Missense_Mutation p.F3522C 0.21 probably_damaging(0.971) TCGA-35-4123-01 1 198225496 198225496 G C NEK7 Intron 0.14 TCGA-35-4123-01 1 198665956 198665956 C A PTPRC Silent p.T72T 0.19 TCGA-35-4123-01 1 201043678 201043678 G T CACNA1S Silent p.A673A 0.13 TCGA-35-4123-01 1 204588373 204588373 C A LRRN2 Missense_Mutation p.A250S 0.15 tolerated(0.78) benign(0.029) TCGA-35-4123-01 1 21902329 21902329 C A ALPL Silent p.S367S 0.18 TCGA-35-4123-01 1 228482094 228482094 C T OBSCN Silent p.T4220T 0.17 TCGA-35-4123-01 1 231052046 231052046 C A TTC13 Missense_Mutation p.Q662H 0.15 tolerated(0.05) possibly_damaging(0.736) TCGA-35-4123-01 1 236645937 236645937 C T EDARADD Silent p.S212S 0.16 TCGA-35-4123-01 1 236646542 236646542 C A EDARADD 3'Flank 0.11 TCGA-35-4123-01 1 237895400 237895400 C T RYR2 Silent p.L3664L 0.13 TCGA-35-4123-01 1 242161853 242161853 G A MAP1LC3C Nonsense_Mutation p.Q62* 0.09 TCGA-35-4123-01 1 247588096 247588096 C T NLRP3 Silent p.L451L 0.20 TCGA-35-4123-01 1 248112520 248112520 C T OR2L8 Missense_Mutation p.R121C 0.18 deleterious(0.01) benign(0.211) TCGA-35-4123-01 1 248436623 248436623 G T OR2T33 Missense_Mutation p.P165Q 0.12 deleterious(0.03) benign(0.219) TCGA-35-4123-01 1 33992844 33992844 C A CSMD2 Missense_Mutation p.G3252W 0.15 deleterious(0) possibly_damaging(0.447) TCGA-35-4123-01 1 34663245 34663245 C A C1orf94 Missense_Mutation p.S247Y 0.18 tolerated(1) possibly_damaging(0.689) TCGA-35-4123-01 1 3542012 3542012 G C TPRG1L Missense_Mutation p.E76Q 0.18 tolerated(0.12) benign(0.122) TCGA-35-4123-01 1 46081054 46081054 C G NASP Missense_Mutation p.L645V 0.16 deleterious(0.02) possibly_damaging(0.837) TCGA-35-4123-01 1 46159007 46159007 G C TMEM69 Missense_Mutation p.M58I 0.18 tolerated(0.35) benign(0.003) TCGA-35-4123-01 1 46978111 46978111 G T DMBX1 Missense_Mutation p.R360L 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-35-4123-01 1 46978112 46978112 G T DMBX1 Silent p.R360R 0.12 TCGA-35-4123-01 1 75065534 75065534 T C C1orf173 Missense_Mutation p.N524S 0.16 tolerated(0.29) benign(0.333) TCGA-35-4123-01 1 95360466 95360466 C T SLC44A3 Silent p.A650A 0.10 TCGA-35-4123-01 20 1617103 1617103 G T SIRPG Missense_Mutation p.P160H 0.23 deleterious(0) probably_damaging(0.986) TCGA-35-4123-01 20 20177420 20177420 G T C20orf26 Missense_Mutation p.K599N 0.16 tolerated(0.11) possibly_damaging(0.881) TCGA-35-4123-01 20 31608184 31608184 G T BPIFB2 Silent p.G377G 0.17 TCGA-35-4123-01 20 33001615 33001615 G T ITCH Missense_Mutation p.L135F 0.17 deleterious(0.01) probably_damaging(0.986) TCGA-35-4123-01 20 3655230 3655230 G T ADAM33 Missense_Mutation p.T174N 0.20 tolerated(0.33) benign(0.206) TCGA-35-4123-01 20 46311847 46311847 C G SULF2 Missense_Mutation p.G319R 0.26 deleterious(0) probably_damaging(1) TCGA-35-4123-01 20 47292735 47292735 G A PREX1 Missense_Mutation p.A554V 0.13 tolerated(0.1) benign(0.158) TCGA-35-4123-01 20 47990014 47990014 G T KCNB1 Missense_Mutation p.L695I 0.16 tolerated_low_confidence(0.43) benign(0.237) TCGA-35-4123-01 21 37518591 37518591 G C CBR3 Silent p.S205S 0.17 TCGA-35-4123-01 21 37617641 37617641 C T DOPEY2 Silent p.D1121D 0.20 TCGA-35-4123-01 21 45825878 45825878 C A TRPM2 Silent p.I916I 0.20 TCGA-35-4123-01 21 47570097 47570097 G A FTCD Missense_Mutation p.A281V 0.15 tolerated(0.11) benign(0.269) TCGA-35-4123-01 22 17072677 17072677 G T CCT8L2 Missense_Mutation p.A255E 0.23 deleterious(0.01) possibly_damaging(0.824) TCGA-35-4123-01 22 17669245 17669245 G T CECR1 Missense_Mutation p.F355L 0.19 tolerated(0.09) possibly_damaging(0.447) TCGA-35-4123-01 22 31534744 31534744 G T PLA2G3 Missense_Mutation p.R186S 0.23 deleterious(0.04) benign(0.138) TCGA-35-4123-01 22 38229004 38229004 A G ANKRD54 Silent p.H227H 0.26 TCGA-35-4123-01 2 101010245 101010245 C A CHST10 Splice_Site p.X178_splice 0.28 TCGA-35-4123-01 2 103274287 103274287 G T SLC9A2 Missense_Mutation p.G185V 0.13 deleterious(0) probably_damaging(1) TCGA-35-4123-01 2 125281898 125281898 G T CNTNAP5 Missense_Mutation p.G448V 0.32 deleterious(0) probably_damaging(1) TCGA-35-4123-01 2 129025701 129025701 C T HS6ST1 3'UTR 0.40 TCGA-35-4123-01 2 131519727 131519727 G T AMER3 Missense_Mutation p.A28S 0.17 tolerated(0.21) benign(0.017) TCGA-35-4123-01 2 132021567 132021567 C A POTEE Missense_Mutation p.R847S 0.28 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-35-4123-01 2 136261918 136261918 C A ZRANB3 Missense_Mutation p.A48S 0.07 deleterious(0.01) probably_damaging(1) TCGA-35-4123-01 2 141643727 141643727 C T LRP1B Missense_Mutation p.G1315E 0.11 probably_damaging(0.931) TCGA-35-4123-01 2 149542282 149542282 G T EPC2 Missense_Mutation p.S688I 0.16 tolerated(0.07) benign(0.172) TCGA-35-4123-01 2 165986747 165986747 A T SCN3A Silent p.I875I 0.20 TCGA-35-4123-01 2 168115433 168115433 G C XIRP2 3'UTR 0.20 TCGA-35-4123-01 2 172945218 172945218 G A METAP1D 3'UTR 0.20 TCGA-35-4123-01 2 172945222 172945222 A T METAP1D 3'UTR 0.17 TCGA-35-4123-01 2 174820756 174820756 T C SP3 Missense_Mutation p.N162D 0.23 tolerated(0.43) probably_damaging(0.931) TCGA-35-4123-01 2 179429587 179429587 A G TTN Missense_Mutation p.V27091A 0.19 TCGA-35-4123-01 2 179449825 179449825 G T TTN Missense_Mutation p.T21549N 0.17 TCGA-35-4123-01 2 185801222 185801222 A T ZNF804A Missense_Mutation p.N367Y 0.14 deleterious(0.02) benign(0.234) TCGA-35-4123-01 2 187626438 187626438 C A FAM171B Silent p.R457R 0.09 TCGA-35-4123-01 2 190719014 190719014 C T PMS1 Missense_Mutation p.P339L 0.12 tolerated(0.06) benign(0.016) TCGA-35-4123-01 2 1926245 1926245 G T MYT1L Silent p.T432T 0.20 TCGA-35-4123-01 2 220251413 220251413 C T DNPEP Missense_Mutation p.A103T 0.13 deleterious(0.02) possibly_damaging(0.859) TCGA-35-4123-01 2 220354241 220354241 C A SPEG Nonsense_Mutation p.S2834* 0.20 TCGA-35-4123-01 2 228243815 228243815 C G TM4SF20 Missense_Mutation p.G57A 0.16 deleterious(0) probably_damaging(1) TCGA-35-4123-01 2 230861624 230861624 A T FBXO36 Silent p.S121S 0.15 TCGA-35-4123-01 2 233834989 233834989 G T NGEF Silent p.I106I 0.15 TCGA-35-4123-01 2 241079774 241079774 G T OTOS 5'UTR 0.40 TCGA-35-4123-01 2 27465587 27465587 A C CAD Missense_Mutation p.S2108R 0.12 tolerated(0.06) benign(0.392) TCGA-35-4123-01 2 33590483 33590483 G C LTBP1 Missense_Mutation p.G1542R 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-35-4123-01 2 40656817 40656817 G T SLC8A1 Missense_Mutation p.R202S 0.24 tolerated(0.06) possibly_damaging(0.797) TCGA-35-4123-01 2 44079961 44079961 C A ABCG8 Silent p.A306A 0.03 TCGA-35-4123-01 2 46986062 46986062 G T SOCS5 Missense_Mutation p.K131N 0.22 tolerated(0.07) possibly_damaging(0.598) TCGA-35-4123-01 2 48032810 48032810 G C MSH6 Missense_Mutation p.A1204P 0.23 deleterious(0) probably_damaging(0.999) TCGA-35-4123-01 2 71206297 71206297 G A ANKRD53 Missense_Mutation p.A81T 0.08 tolerated(0.21) benign(0.004) TCGA-35-4123-01 2 74452074 74452074 G T SLC4A5 Missense_Mutation p.Q1063K 0.14 tolerated(0.6) possibly_damaging(0.688) TCGA-35-4123-01 2 86271325 86271325 C T POLR1A Silent p.L1024L 0.16 TCGA-35-4123-01 3 10140745 10140745 C G FANCD2 3'UTR 0.11 TCGA-35-4123-01 3 121411082 121411082 T A GOLGB1 Missense_Mutation p.R2377W 0.19 probably_damaging(0.926) TCGA-35-4123-01 3 122060408 122060408 C T CSTA Silent p.G97G 0.20 TCGA-35-4123-01 3 131293942 131293942 G C CPNE4 Missense_Mutation p.I300M 0.25 deleterious(0) benign(0.015) TCGA-35-4123-01 3 157815836 157815836 C T SHOX2 Missense_Mutation p.A350T 0.05 tolerated(0.1) unknown(0) TCGA-35-4123-01 3 167183287 167183287 G T SERPINI2 Missense_Mutation p.A218D 0.19 tolerated(0.21) benign(0.424) TCGA-35-4123-01 3 186953530 186953530 C A MASP1 Missense_Mutation p.W710L 0.06 deleterious(0) probably_damaging(0.998) TCGA-35-4123-01 3 21552501 21552501 G T ZNF385D Silent p.A97A 0.18 TCGA-35-4123-01 3 383704 383704 T A CHL1 Silent p.A206A 0.15 TCGA-35-4123-01 3 46400068 46400068 C A CCR2 Intron 0.39 TCGA-35-4123-01 3 53531424 53531424 G A CACNA1D Missense_Mutation p.A105T 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-35-4123-01 3 72890283 72890283 G C SHQ1 Silent p.P133P 0.20 TCGA-35-4123-01 3 73433091 73433091 G T PDZRN3 Missense_Mutation p.H876N 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-35-4123-01 3 7620535 7620535 G A GRM7 Missense_Mutation p.A648T 0.06 deleterious(0.04) probably_damaging(0.998) TCGA-35-4123-01 3 9055137 9055137 C T SRGAP3 Missense_Mutation p.D668N 0.19 tolerated(0.13) probably_damaging(0.998) TCGA-35-4123-01 3 98002178 98002178 G T OR5H2 Silent p.L149L 0.20 TCGA-35-4123-01 4 113541279 113541279 C A C4orf21 Missense_Mutation p.G77V 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-35-4123-01 4 123850195 123850195 G T SPATA5 Missense_Mutation p.V97L 0.21 deleterious(0) benign(0.373) TCGA-35-4123-01 4 128637582 128637582 A T INTU Missense_Mutation p.L940F 0.23 deleterious(0.01) probably_damaging(0.984) TCGA-35-4123-01 4 134073607 134073607 G C PCDH10 Missense_Mutation p.C771S 0.09 tolerated(0.53) benign(0.021) TCGA-35-4123-01 4 165961743 165961743 A G TRIM60 Silent p.K173K 0.13 TCGA-35-4123-01 4 39439587 39439587 C A KLB Missense_Mutation p.S526Y 0.18 deleterious(0.02) probably_damaging(0.962) TCGA-35-4123-01 4 46390663 46390663 C A GABRA2 Missense_Mutation p.D21Y 0.10 tolerated_low_confidence(0.69) benign(0.006) TCGA-35-4123-01 4 56878095 56878095 A T CEP135 Missense_Mutation p.T916S 0.12 tolerated(0.59) possibly_damaging(0.47) TCGA-35-4123-01 4 6086641 6086641 C A JAKMIP1 Nonsense_Mutation p.E296* 0.20 TCGA-35-4123-01 4 68699042 68699042 G T TMPRSS11D Missense_Mutation p.T191N 0.11 deleterious(0.03) benign(0.02) TCGA-35-4123-01 4 70156378 70156378 G T UGT2B28 Missense_Mutation p.G387W 0.11 deleterious(0) probably_damaging(1) TCGA-35-4123-01 4 75246765 75246765 G A EREG Silent p.V63V 0.22 TCGA-35-4123-01 4 79343066 79343066 G A FRAS1 Silent p.T1530T 0.14 TCGA-35-4123-01 4 88767696 88767696 G T MEPE 3'UTR 0.33 TCGA-35-4123-01 5 113822748 113822749 - A KCNN2 Frame_Shift_Ins p.N421Kfs*54 0.13 TCGA-35-4123-01 5 121413408 121413408 G A LOX Silent p.I91I 0.19 TCGA-35-4123-01 5 13885124 13885124 T A DNAH5 Missense_Mutation p.H986L 0.11 benign(0.227) TCGA-35-4123-01 5 140581684 140581684 T C PCDHB11 Silent p.L779L 0.24 TCGA-35-4123-01 5 140590616 140590616 C A PCDHB12 Missense_Mutation p.L713M 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.476) TCGA-35-4123-01 5 147261642 147261642 G T SCGB3A2 3'UTR 0.13 TCGA-35-4123-01 5 150946774 150946774 G A FAT2 Silent p.I573I 0.29 TCGA-35-4123-01 5 155935668 155935668 G T SGCD Nonsense_Mutation p.E84* 0.29 TCGA-35-4123-01 5 156469690 156469690 C A HAVCR1 Missense_Mutation p.G262V 0.26 deleterious(0) probably_damaging(0.988) TCGA-35-4123-01 5 175933972 175933972 C T FAF2 3'UTR 0.26 TCGA-35-4123-01 5 32739117 32739117 G T NPR3 Missense_Mutation p.G347V 0.15 deleterious(0.02) probably_damaging(0.982) TCGA-35-4123-01 5 33936760 33936760 C A RXFP3 5'UTR 0.17 TCGA-35-4123-01 5 43509410 43509410 T C C5orf34 Missense_Mutation p.E11G 0.17 tolerated(0.22) benign(0.126) TCGA-35-4123-01 5 458042 458042 G C EXOC3 Missense_Mutation p.A398P 0.19 deleterious(0.02) benign(0.113) TCGA-35-4123-01 5 7709407 7709407 C A ADCY2 Silent p.T495T 0.10 TCGA-35-4123-01 6 10430114 10430114 T G LINC00518 RNA 0.22 TCGA-35-4123-01 6 110714106 110714106 C A DDO Missense_Mutation p.V328L 0.18 tolerated(0.07) benign(0.163) TCGA-35-4123-01 6 128134714 128134714 C A THEMIS Missense_Mutation p.A358S 0.19 tolerated(0.06) benign(0.316) TCGA-35-4123-01 6 132910429 132910429 G T TAAR5 Missense_Mutation p.H133N 0.30 deleterious(0) possibly_damaging(0.806) TCGA-35-4123-01 6 165715670 165715670 C A C6orf118 Silent p.R47R 0.27 TCGA-35-4123-01 6 165808673 165808673 G C PDE10A Missense_Mutation p.S501C 0.15 tolerated(0.18) benign(0) TCGA-35-4123-01 6 17817465 17817465 C A KIF13A Splice_Site p.X596_splice 0.20 TCGA-35-4123-01 6 394900 394900 G A IRF4 Missense_Mutation p.C99Y 0.13 deleterious(0) probably_damaging(0.99) TCGA-35-4123-01 6 47846409 47846409 A T PTCHD4 Missense_Mutation p.F724Y 0.27 tolerated(0.49) probably_damaging(0.966) TCGA-35-4123-01 6 656684 656684 C G HUS1B Silent p.L87L 0.20 TCGA-35-4123-01 6 66205086 66205086 G T EYS Missense_Mutation p.A73D 0.23 deleterious_low_confidence(0.02) benign(0.017) TCGA-35-4123-01 7 100464250 100464250 T A SLC12A9 3'UTR 0.25 TCGA-35-4123-01 7 100551966 100551967 - A MUC3A Frame_Shift_Ins p.T240Nfs*46 0.16 TCGA-35-4123-01 7 103193923 103193923 G A RELN Silent p.T2019T 0.25 TCGA-35-4123-01 7 104767464 104767464 C A SRPK2 Missense_Mutation p.G600W 0.11 deleterious(0) probably_damaging(0.993) TCGA-35-4123-01 7 110764808 110764808 C A LRRN3 Missense_Mutation p.S660R 0.29 tolerated(0.55) benign(0.001) TCGA-35-4123-01 7 128116783 128116783 G C METTL2B 5'UTR 0.42 TCGA-35-4123-01 7 131908295 131908295 C A PLXNA4 Missense_Mutation p.K696N 0.18 tolerated(1) benign(0.022) TCGA-35-4123-01 7 136700630 136700630 A C CHRM2 Missense_Mutation p.T340P 0.07 tolerated(0.31) benign(0.295) TCGA-35-4123-01 7 14216296 14216296 T A DGKB Intron 0.23 TCGA-35-4123-01 7 142510407 142510407 A T TRBV30 Missense_Mutation p.S67T 0.15 deleterious(0) possibly_damaging(0.88) TCGA-35-4123-01 7 142563342 142563342 C G EPHB6 Silent p.G353G 0.09 TCGA-35-4123-01 7 149475980 149475980 T A SSPO RNA 0.16 TCGA-35-4123-01 7 155100178 155100178 G C INSIG1 3'UTR 0.20 TCGA-35-4123-01 7 16900155 16900155 C A AGR3 Missense_Mutation p.L140F 0.12 tolerated(0.08) possibly_damaging(0.783) TCGA-35-4123-01 7 18705968 18705968 A T HDAC9 Missense_Mutation p.S534C 0.12 deleterious(0.02) benign(0.071) TCGA-35-4123-01 7 18868809 18868810 - T HDAC9 Frame_Shift_Ins p.G784Wfs*5 0.14 TCGA-35-4123-01 7 21470206 21470206 C A SP4 Missense_Mutation p.Q475K 0.10 deleterious(0.02) possibly_damaging(0.535) TCGA-35-4123-01 7 44156543 44156543 A C POLD2 Missense_Mutation p.L218R 0.14 deleterious(0) probably_damaging(0.971) TCGA-35-4123-01 7 45005450 45005450 C A MYO1G Missense_Mutation p.G723C 0.23 deleterious(0) probably_damaging(0.936) TCGA-35-4123-01 7 5360180 5360180 G A TNRC18 Nonsense_Mutation p.Q2207* 0.21 TCGA-35-4123-01 7 70853322 70853322 C A WBSCR17 Missense_Mutation p.A175D 0.26 deleterious(0) probably_damaging(0.93) TCGA-35-4123-01 7 76112259 76112259 G T DTX2 Missense_Mutation p.A235S 0.07 tolerated(0.3) benign(0.319) TCGA-35-4123-01 7 76610372 76610372 G T UPK3B Intron 0.37 TCGA-35-4123-01 7 83016314 83016314 C T SEMA3E Missense_Mutation p.G574R 0.13 deleterious(0.02) probably_damaging(1) TCGA-35-4123-01 7 90895971 90895971 G T FZD1 Silent p.P592P 0.42 TCGA-35-4123-01 7 92921085 92921085 G T CCDC132 Missense_Mutation p.S338I 0.21 deleterious(0) probably_damaging(0.989) TCGA-35-4123-01 7 97821047 97821047 C T LMTK2 Nonsense_Mutation p.Q424* 0.34 TCGA-35-4123-01 7 99110112 99110112 G T ZKSCAN5 Missense_Mutation p.A151S 0.12 tolerated(0.39) benign(0.013) TCGA-35-4123-01 7 99773222 99773222 C G GPC2 Silent p.G207G 0.15 TCGA-35-4123-01 8 110457421 110457421 G C PKHD1L1 Missense_Mutation p.V1775L 0.08 tolerated(0.7) benign(0.005) TCGA-35-4123-01 8 116427219 116427219 C G TRPS1 Missense_Mutation p.A973P 0.33 tolerated_low_confidence(0.26) benign(0.008) TCGA-35-4123-01 8 124998416 124998416 G T FER1L6 Missense_Mutation p.G507C 0.14 deleterious(0) probably_damaging(1) TCGA-35-4123-01 8 145690322 145690322 G T CYHR1 5'UTR 0.55 TCGA-35-4123-01 8 2057240 2057240 G A MYOM2 Missense_Mutation p.R1033H 0.39 deleterious(0) probably_damaging(0.999) TCGA-35-4123-01 8 43211932 43211932 C A POTEA RNA 0.10 TCGA-35-4123-01 8 77765131 77765131 C T ZFHX4 Missense_Mutation p.L1992F 0.25 possibly_damaging(0.765) TCGA-35-4123-01 8 77766327 77766327 C A ZFHX4 Silent p.P2390P 0.20 TCGA-35-4123-01 8 89053848 89053848 C A MMP16 Silent p.L555L 0.38 TCGA-35-4123-01 8 94935757 94935757 C T PDP1 Silent p.N515N 0.28 TCGA-35-4123-01 8 94935758 94935758 G T PDP1 Nonsense_Mutation p.E516* 0.28 TCGA-35-4123-01 8 95188777 95188777 G T CDH17 Missense_Mutation p.S139Y 0.26 deleterious(0.04) possibly_damaging(0.873) TCGA-35-4123-01 9 101807041 101807041 C T COL15A1 Missense_Mutation p.P890S 0.13 tolerated(0.13) probably_damaging(0.998) TCGA-35-4123-01 9 107367587 107367587 C T OR13C2 Missense_Mutation p.G108R 0.09 deleterious(0.01) probably_damaging(1) TCGA-35-4123-01 9 117139109 117139109 C G AKNA Silent p.R326R 0.18 TCGA-35-4123-01 9 129851286 129851286 G A ANGPTL2 Nonsense_Mutation p.R472* 0.23 TCGA-35-4123-01 9 136501597 136501597 C A DBH Missense_Mutation p.A35D 0.08 deleterious(0.01) probably_damaging(0.945) TCGA-35-4123-01 9 138714662 138714662 C G CAMSAP1 Silent p.R615R 0.05 TCGA-35-4123-01 9 14859286 14859286 C A FREM1 Missense_Mutation p.D176Y 0.15 tolerated(0.22) benign(0.01) TCGA-35-4123-01 9 14859287 14859287 C A FREM1 Silent p.L175L 0.15 TCGA-35-4123-01 9 33073725 33073725 C G SMU1 Missense_Mutation p.V36L 0.12 deleterious(0.05) benign(0.048) TCGA-35-4123-01 9 37516063 37516063 T A FBXO10 Missense_Mutation p.H845L 0.22 deleterious(0.01) benign(0.416) TCGA-35-4123-01 9 37733495 37733495 A G FRMPD1 Missense_Mutation p.I341V 0.09 tolerated(0.23) possibly_damaging(0.68) TCGA-35-4123-01 9 7049120 7049120 G C KDM4C Missense_Mutation p.V782L 0.16 tolerated(0.25) benign(0.023) TCGA-35-4123-01 X 115582710 115582710 C G SLC6A14 Missense_Mutation p.S345C 0.20 deleterious(0.03) possibly_damaging(0.838) TCGA-35-4123-01 X 122319800 122319800 G C GRIA3 Missense_Mutation p.D76H 0.15 tolerated(0.06) probably_damaging(1) TCGA-35-4123-01 X 150348520 150348520 G T GPR50 Missense_Mutation p.M155I 0.44 tolerated(0.07) benign(0.056) TCGA-35-4123-01 X 151997692 151997692 C A CETN2 Splice_Site p.X97_splice 0.35 TCGA-35-4123-01 X 151997693 151997693 C A CETN2 Missense_Mutation p.M97I 0.35 tolerated(0.38) benign(0.048) TCGA-35-4123-01 X 2947341 2947341 C A ARSH Missense_Mutation p.S418Y 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-35-4123-01 X 3002330 3002330 C A ARSF Nonsense_Mutation p.C151* 0.37 TCGA-35-4123-01 X 39933726 39933726 C T BCOR Missense_Mutation p.M291I 0.13 deleterious(0.02) probably_damaging(0.956) TCGA-35-4123-01 X 64139199 64139199 C A ZC4H2 Intron 0.47 TCGA-35-4123-01 X 77254174 77254174 G T ATP7A Silent p.R512R 0.23 TCGA-35-5375-01 10 100015439 100015439 G A LOXL4 Missense_Mutation p.R496C 0.29 deleterious(0) possibly_damaging(0.849) TCGA-35-5375-01 10 102748989 102748989 G T C10orf2 Missense_Mutation p.R341L 0.73 tolerated(0.62) benign(0.106) TCGA-35-5375-01 10 102781973 102781973 C A PDZD7 Missense_Mutation p.V238L 0.50 deleterious(0) probably_damaging(0.98) TCGA-35-5375-01 10 103567562 103567562 G A MGEA5 Missense_Mutation p.H193Y 0.65 deleterious(0) benign(0.088) TCGA-35-5375-01 10 125521440 125521440 G T CPXM2 Missense_Mutation p.F575L 0.76 deleterious(0.02) possibly_damaging(0.676) TCGA-35-5375-01 10 17199442 17199442 T A TRDMT1 Missense_Mutation p.K295N 0.63 deleterious(0) probably_damaging(0.997) TCGA-35-5375-01 10 23481565 23481565 C G PTF1A Missense_Mutation p.L36V 0.70 deleterious_low_confidence(0.01) possibly_damaging(0.522) TCGA-35-5375-01 10 24762579 24762579 A G KIAA1217 Silent p.A423A 0.66 TCGA-35-5375-01 10 26501001 26501001 C T MYO3A 3'UTR 0.56 TCGA-35-5375-01 10 49365353 49365353 C A FRMPD2 3'UTR 0.21 TCGA-35-5375-01 10 56287633 56287633 G A PCDH15 Silent p.C32C 0.57 TCGA-35-5375-01 10 59997554 59997554 C A IPMK Missense_Mutation p.G71V 0.53 deleterious(0) possibly_damaging(0.896) TCGA-35-5375-01 10 59997555 59997555 C A IPMK Missense_Mutation p.G71C 0.54 deleterious(0) possibly_damaging(0.687) TCGA-35-5375-01 10 61013993 61013993 C A FAM13C Intron 0.77 TCGA-35-5375-01 10 61112135 61112135 G A FAM13C Silent p.T73T 0.81 TCGA-35-5375-01 10 64974642 64974642 T A JMJD1C Missense_Mutation p.N429Y 0.43 deleterious_low_confidence(0.01) benign(0.166) TCGA-35-5375-01 10 70645895 70645896 - T STOX1 Frame_Shift_Ins p.Y782Lfs*9 0.24 TCGA-35-5375-01 10 73111446 73111446 T C SLC29A3 Missense_Mutation p.C171R 0.80 deleterious(0.02) probably_damaging(0.936) TCGA-35-5375-01 10 73567303 73567303 A T CDH23 Missense_Mutation p.Q540L 0.17 tolerated(0.12) benign(0.003) TCGA-35-5375-01 10 75276381 75276381 C A USP54 Missense_Mutation p.R1268M 0.60 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-35-5375-01 10 88277334 88277334 T G WAPAL Missense_Mutation p.T165P 0.26 tolerated_low_confidence(0.26) benign(0.026) TCGA-35-5375-01 10 98744545 98744545 G C C10orf12 Missense_Mutation p.S1133T 0.53 tolerated(1) benign(0.01) TCGA-35-5375-01 10 99625320 99625320 G A CRTAC1 Silent p.C657C 0.28 TCGA-35-5375-01 11 114167428 114167428 C T NNMT Silent p.C50C 0.16 TCGA-35-5375-01 11 16340103 16340103 T A SOX6 Missense_Mutation p.M112L 0.59 tolerated_low_confidence(1) benign(0.001) TCGA-35-5375-01 11 17522677 17522677 G T USH1C Silent p.A767A 0.47 TCGA-35-5375-01 11 22281220 22281220 G A ANO5 Silent p.L521L 0.71 TCGA-35-5375-01 11 33112133 33112133 T C CSTF3 Missense_Mutation p.K529R 0.19 tolerated(0.56) benign(0.034) TCGA-35-5375-01 11 33689482 33689482 A T KIAA1549L Missense_Mutation p.R1778W 0.21 deleterious(0) probably_damaging(0.999) TCGA-35-5375-01 11 36596365 36596365 A C RAG1 Missense_Mutation p.H504P 0.41 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-35-5375-01 11 36597145 36597145 G T RAG1 Missense_Mutation p.R764L 0.50 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-35-5375-01 11 40136099 40136099 C A LRRC4C Nonsense_Mutation p.E582* 0.14 TCGA-35-5375-01 11 40136100 40136100 C A LRRC4C Missense_Mutation p.M581I 0.16 tolerated_low_confidence(0.2) benign(0) TCGA-35-5375-01 11 40136282 40136282 C T LRRC4C Missense_Mutation p.E521K 0.19 deleterious(0.01) probably_damaging(0.928) TCGA-35-5375-01 11 46677781 46677781 A G ATG13 Splice_Site p.X153_splice 0.39 TCGA-35-5375-01 11 51411896 51411896 C A OR4A5 Missense_Mutation p.G167V 0.56 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-35-5375-01 11 5142720 5142721 - A OR52A4 RNA 0.39 TCGA-35-5375-01 11 55064961 55064961 G T TRIM51HP RNA 0.33 TCGA-35-5375-01 11 55322792 55322792 C A OR4C15 Missense_Mutation p.P337H 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-35-5375-01 11 56510794 56510794 A G OR9G4 Missense_Mutation p.I165T 0.55 tolerated(0.18) benign(0.012) TCGA-35-5375-01 11 5757979 5757979 T C OR56B1 Missense_Mutation p.V78A 0.62 tolerated(0.1) benign(0.049) TCGA-35-5375-01 11 57970940 57970940 G A OR1S2 Silent p.V238V 0.28 TCGA-35-5375-01 11 59481123 59481123 G T OR10V1 Missense_Mutation p.L66M 0.40 deleterious(0) probably_damaging(0.999) TCGA-35-5375-01 11 7059854 7059854 T C NLRP14 Missense_Mutation p.F13L 0.23 deleterious(0.02) probably_damaging(0.989) TCGA-35-5375-01 11 88059549 88059549 C T CTSC Intron 0.72 TCGA-35-5375-01 12 101442127 101442127 C A ANO4 Missense_Mutation p.H385Q 0.13 deleterious(0.04) possibly_damaging(0.66) TCGA-35-5375-01 12 103984725 103984725 A C STAB2 Silent p.R44R 0.16 TCGA-35-5375-01 12 10600141 10600141 A C KLRC1 Missense_Mutation p.F194V 0.23 deleterious(0.03) possibly_damaging(0.569) TCGA-35-5375-01 12 107080751 107080751 C A RFX4 Missense_Mutation p.T165K 0.15 tolerated(0.07) benign(0.076) TCGA-35-5375-01 12 109182837 109182837 G A SSH1 Missense_Mutation p.H693Y 0.18 tolerated_low_confidence(0.07) benign(0.007) TCGA-35-5375-01 12 109306364 109306364 G - SVOP Frame_Shift_Del p.R467Efs*65 0.17 TCGA-35-5375-01 12 11091748 11091748 C G TAS2R14 Missense_Mutation p.G20A 0.63 deleterious(0.02) probably_damaging(0.956) TCGA-35-5375-01 12 119961558 119961558 C T CCDC60 Silent p.A388A 0.70 TCGA-35-5375-01 12 122396983 122396983 C T WDR66 Nonsense_Mutation p.Q706* 0.12 TCGA-35-5375-01 12 123983237 123983237 C A RILPL1 Missense_Mutation p.G219W 0.61 deleterious(0) probably_damaging(0.998) TCGA-35-5375-01 12 124106443 124106443 C A EIF2B1 Missense_Mutation p.A260S 0.11 tolerated(0.8) benign(0.004) TCGA-35-5375-01 12 125621357 125621357 G T AACS Missense_Mutation p.G610C 0.11 deleterious(0.04) possibly_damaging(0.474) TCGA-35-5375-01 12 18435367 18435367 C T PIK3C2G Nonsense_Mutation p.Q118* 0.14 TCGA-35-5375-01 12 23716278 23716278 C A SOX5 Nonsense_Mutation p.E468* 0.11 TCGA-35-5375-01 12 27081679 27081679 C G ASUN Missense_Mutation p.V154L 0.17 tolerated(0.44) benign(0.208) TCGA-35-5375-01 12 42499835 42499835 C G GXYLT1 Missense_Mutation p.D217H 0.15 deleterious(0) probably_damaging(1) TCGA-35-5375-01 12 53201035 53201035 C A KRT4 Splice_Site p.X461_splice 0.49 TCGA-35-5375-01 12 55688394 55688394 G T OR6C6 Missense_Mutation p.T208K 0.65 deleterious_low_confidence(0) probably_damaging(1) TCGA-35-5375-01 12 57627019 57627019 G T SHMT2 Missense_Mutation p.R305L 0.16 deleterious(0.02) benign(0.112) TCGA-35-5375-01 12 62148764 62148764 G A FAM19A2 Missense_Mutation p.H50Y 0.45 deleterious(0) probably_damaging(0.993) TCGA-35-5375-01 12 67698483 67698483 A T CAND1 Silent p.V464V 0.17 TCGA-35-5375-01 12 72338118 72338118 G T TPH2 Silent p.R100R 0.49 TCGA-35-5375-01 12 88487599 88487599 G A CEP290 Missense_Mutation p.S1086L 0.14 possibly_damaging(0.726) TCGA-35-5375-01 12 9305864 9305864 C A PZP Missense_Mutation p.V1284F 0.15 deleterious(0) probably_damaging(0.991) TCGA-35-5375-01 12 97158003 97158003 G T C12orf55 Missense_Mutation p.W2705C 0.59 deleterious(0) benign(0) TCGA-35-5375-01 12 99793432 99793432 T G ANKS1B Missense_Mutation p.K578T 0.10 tolerated(0.36) benign(0.055) TCGA-35-5375-01 13 111134904 111134904 C A COL4A2 Missense_Mutation p.P934T 0.59 benign(0.444) TCGA-35-5375-01 13 23914212 23914212 T A SACS Missense_Mutation p.D1268V 0.48 benign(0.312) TCGA-35-5375-01 13 29287437 29287437 A G SLC46A3 Missense_Mutation p.F147S 0.17 deleterious(0) probably_damaging(0.921) TCGA-35-5375-01 13 37678436 37678436 G T CSNK1A1L Missense_Mutation p.Q320K 0.55 tolerated_low_confidence(0.23) possibly_damaging(0.867) TCGA-35-5375-01 13 48954377 48954377 A T RB1 Nonsense_Mutation p.R500* 0.67 TCGA-35-5375-01 13 58206676 58206676 C T PCDH17 5'UTR 0.44 TCGA-35-5375-01 14 100172838 100172838 C G CYP46A1 Intron 0.50 TCGA-35-5375-01 14 102510613 102510613 C T DYNC1H1 Silent p.G4229G 0.09 TCGA-35-5375-01 14 103805183 103805183 G A EIF5 Missense_Mutation p.E233K 0.11 tolerated(0.06) possibly_damaging(0.891) TCGA-35-5375-01 14 105418113 105418113 G T AHNAK2 Silent p.G1225G 0.17 TCGA-35-5375-01 14 105916508 105916508 G A MTA1 Missense_Mutation p.A119T 0.24 deleterious(0) possibly_damaging(0.752) TCGA-35-5375-01 14 106054051 106054051 G T IGHA2 Missense_Mutation p.S156R 0.38 tolerated(0.45) benign(0.012) TCGA-35-5375-01 14 19553809 19553809 G A POTEG Silent p.P131P 0.08 TCGA-35-5375-01 14 20502513 20502513 G T OR4K13 Silent p.I135I 0.07 TCGA-35-5375-01 14 22386725 22386725 A G TRAV13-2 Missense_Mutation p.Y45C 0.15 deleterious(0) probably_damaging(0.999) TCGA-35-5375-01 14 22459088 22459088 T G TRAV16 Silent p.A80A 0.30 TCGA-35-5375-01 14 37838830 37838830 G C MIPOL1 Splice_Site p.X312_splice 0.22 TCGA-35-5375-01 14 45633758 45633758 G C FANCM Missense_Mutation p.R593P 0.48 deleterious(0.03) possibly_damaging(0.505) TCGA-35-5375-01 14 59946027 59946027 T C L3HYPDH Missense_Mutation p.D184G 0.37 deleterious(0.02) probably_damaging(1) TCGA-35-5375-01 14 65479032 65479032 C T FNTB Intron 0.10 TCGA-35-5375-01 14 68275994 68275994 C G ZFYVE26 Missense_Mutation p.V96L 0.36 tolerated(0.32) benign(0.009) TCGA-35-5375-01 14 71444699 71444699 G A PCNX Missense_Mutation p.V549I 0.22 deleterious_low_confidence(0.04) benign(0.003) TCGA-35-5375-01 14 89647120 89647120 C A FOXN3 Missense_Mutation p.R281L 0.38 tolerated(0.07) probably_damaging(0.998) TCGA-35-5375-01 14 95088688 95088688 G A SERPINA3 Missense_Mutation p.E310K 0.47 tolerated(0.16) benign(0.097) TCGA-35-5375-01 15 28230271 28230271 C G OCA2 Missense_Mutation p.V435L 0.56 tolerated(0.17) benign(0.392) TCGA-35-5375-01 15 30926395 30926395 G C ARHGAP11B Missense_Mutation p.G107A 0.50 tolerated(0.6) benign(0.006) TCGA-35-5375-01 15 42041756 42041756 T G MGA Missense_Mutation p.I1984R 0.31 tolerated_low_confidence(0.11) benign(0.24) TCGA-35-5375-01 15 51741321 51741321 G A DMXL2 Nonsense_Mutation p.R2992* 0.24 TCGA-35-5375-01 15 51741341 51741341 T A DMXL2 Missense_Mutation p.H2985L 0.43 deleterious(0) probably_damaging(0.999) TCGA-35-5375-01 15 60297294 60297294 G C FOXB1 Missense_Mutation p.M44I 0.48 deleterious(0.01) benign(0.349) TCGA-35-5375-01 15 65108869 65108869 G A PIF1 Silent p.G590G 0.43 TCGA-35-5375-01 15 75108976 75108976 A T LMAN1L Missense_Mutation p.S148C 0.32 deleterious(0) probably_damaging(0.968) TCGA-35-5375-01 15 86807971 86807971 T C AGBL1 Silent p.S477S 0.39 TCGA-35-5375-01 16 11846653 11846655 GCA - ZC3H7A In_Frame_Del p.C866del 0.31 TCGA-35-5375-01 16 15811192 15811192 C T MYH11 Missense_Mutation p.S1777N 0.63 benign(0.001) TCGA-35-5375-01 16 20548599 20548599 C A ACSM2B Missense_Mutation p.G572V 0.47 deleterious(0.03) benign(0.343) TCGA-35-5375-01 16 22358637 22358637 C T CDR2 Silent p.V338V 0.10 TCGA-35-5375-01 16 23721868 23721868 G T ERN2 Missense_Mutation p.P116T 0.45 deleterious(0) possibly_damaging(0.888) TCGA-35-5375-01 16 30376830 30376830 G A TBC1D10B Missense_Mutation p.R348W 0.12 deleterious(0.01) benign(0.125) TCGA-35-5375-01 16 30712111 30712111 T G SRCAP 5'UTR 0.30 TCGA-35-5375-01 16 31371771 31371771 G A ITGAX Missense_Mutation p.R283H 0.24 deleterious(0) probably_damaging(1) TCGA-35-5375-01 16 49856567 49856581 CCTCCCCTGCTCACC - ZNF423 Splice_Site p.X6_splice 0.49 TCGA-35-5375-01 16 51174340 51174340 G T SALL1 Missense_Mutation p.P598H 0.41 deleterious(0.01) benign(0.012) TCGA-35-5375-01 16 58621300 58621300 G T CNOT1 Silent p.P109P 0.12 TCGA-35-5375-01 16 64981542 64981542 C G CDH11 Missense_Mutation p.L785F 0.50 deleterious(0) probably_damaging(0.999) TCGA-35-5375-01 16 67660607 67660607 G A CTCF Missense_Mutation p.A503T 0.74 tolerated(0.1) benign(0.27) TCGA-35-5375-01 16 81953109 81953109 A G PLCG2 Missense_Mutation p.H692R 0.14 deleterious(0) probably_damaging(0.945) TCGA-35-5375-01 16 844112 844112 G A CHTF18 Missense_Mutation p.D621N 0.83 tolerated(0.19) benign(0.118) TCGA-35-5375-01 16 88694395 88694395 C G ZC3H18 Silent p.P779P 0.25 TCGA-35-5375-01 17 10366498 10366498 T C MYH4 Silent p.L271L 0.75 TCGA-35-5375-01 17 11881705 11881705 G C ZNF18 Missense_Mutation p.L407V 0.75 tolerated(0.17) benign(0.01) TCGA-35-5375-01 17 16525829 16525829 T C ZNF624 Missense_Mutation p.T791A 0.68 tolerated(0.91) probably_damaging(0.992) TCGA-35-5375-01 17 19213203 19213203 T A EPN2 Missense_Mutation p.S258T 0.21 tolerated(0.06) benign(0.018) TCGA-35-5375-01 17 25758281 25758281 G C TBC1D3P5 RNA 0.18 TCGA-35-5375-01 17 31323984 31323984 C T SPACA3 Missense_Mutation p.P156L 0.30 tolerated(0.31) benign(0.03) TCGA-35-5375-01 17 34311470 34311470 G A CCL14 Missense_Mutation p.S49L 0.39 deleterious(0.03) benign(0.015) TCGA-35-5375-01 17 34958194 34958194 C T MRM1 5'UTR 0.25 TCGA-35-5375-01 17 38710799 38710799 T C CCR7 3'UTR 0.36 TCGA-35-5375-01 17 38787077 38787077 C G SMARCE1 Missense_Mutation p.E306Q 0.30 tolerated(0.14) possibly_damaging(0.727) TCGA-35-5375-01 17 38855764 38855764 C G KRT24 Missense_Mutation p.L431F 0.30 deleterious(0) probably_damaging(1) TCGA-35-5375-01 17 41004383 41004383 C T AOC3 Silent p.L341L 0.14 TCGA-35-5375-01 17 43552468 43552468 T A PLEKHM1 Missense_Mutation p.Q307H 0.48 deleterious(0) benign(0.399) TCGA-35-5375-01 17 46239860 46239860 G T SKAP1 Silent p.R317R 0.35 TCGA-35-5375-01 17 46607742 46607742 G C HOXB1 Silent p.P175P 0.38 TCGA-35-5375-01 17 47696724 47696724 C A SPOP Missense_Mutation p.G75V 0.22 deleterious(0) probably_damaging(1) TCGA-35-5375-01 17 47696725 47696725 C A SPOP Missense_Mutation p.G75W 0.26 deleterious(0.01) probably_damaging(1) TCGA-35-5375-01 17 54555015 54555015 G T ANKFN1 Missense_Mutation p.R650I 0.30 deleterious(0) benign(0.186) TCGA-35-5375-01 17 62856473 62856473 G A LRRC37A3 Missense_Mutation p.A1264V 0.32 deleterious(0.01) probably_damaging(0.933) TCGA-35-5375-01 17 65362551 65362551 G T PSMD12 Missense_Mutation p.P29T 0.24 deleterious(0.01) probably_damaging(0.915) TCGA-35-5375-01 17 67114072 67114072 T G ABCA6 Missense_Mutation p.K488Q 0.10 deleterious(0.01) possibly_damaging(0.822) TCGA-35-5375-01 17 71412116 71412116 C T SDK2 Silent p.G734G 0.33 TCGA-35-5375-01 17 7402375 7402375 T C POLR2A Silent p.C451C 0.72 TCGA-35-5375-01 17 7577559 7577559 G A TP53 Missense_Mutation p.S241F 0.72 deleterious(0) probably_damaging(1) TCGA-35-5375-01 17 76968265 76968265 T A LGALS3BP Missense_Mutation p.H384L 0.55 deleterious(0) probably_damaging(0.999) TCGA-35-5375-01 17 7752487 7752487 G A KDM6B Missense_Mutation p.E961K 0.48 benign(0.096) TCGA-35-5375-01 17 7752588 7752588 G C KDM6B Silent p.V994V 0.60 TCGA-35-5375-01 17 7752684 7752684 G A KDM6B Silent p.E1026E 0.53 TCGA-35-5375-01 17 7752915 7752915 G C KDM6B Silent p.L1103L 0.46 TCGA-35-5375-01 17 7753196 7753196 G A KDM6B Silent p.V1166V 0.44 TCGA-35-5375-01 17 7753205 7753205 G T KDM6B Missense_Mutation p.K1169N 0.44 benign(0.054) TCGA-35-5375-01 17 7753218 7753218 G C KDM6B Missense_Mutation p.E1174Q 0.45 benign(0.234) TCGA-35-5375-01 17 77705081 77705081 C T ENPP7 Silent p.D60D 0.19 TCGA-35-5375-01 17 78293272 78293272 G A RNF213 Intron 0.21 TCGA-35-5375-01 18 12254358 12254358 C A CIDEA 5'UTR 0.53 TCGA-35-5375-01 18 28993162 28993162 G C DSG4 Missense_Mutation p.E928D 0.18 deleterious(0.02) probably_damaging(0.933) TCGA-35-5375-01 18 30992034 30992034 C A CCDC178 Missense_Mutation p.V7F 0.24 tolerated_low_confidence(0.12) benign(0.088) TCGA-35-5375-01 18 32391994 32391994 G T DTNA Missense_Mutation p.V174F 0.43 deleterious(0) probably_damaging(0.981) TCGA-35-5375-01 18 44559841 44559841 G C TCEB3B Missense_Mutation p.Q599E 0.35 tolerated(1) possibly_damaging(0.82) TCGA-35-5375-01 18 51025876 51025876 G A DCC Silent p.Q1369Q 0.20 TCGA-35-5375-01 18 51820115 51820115 G T POLI Nonsense_Mutation p.E501* 0.50 TCGA-35-5375-01 18 61223420 61223420 A G SERPINB12 Missense_Mutation p.K10E 0.21 tolerated(0.81) benign(0.292) TCGA-35-5375-01 18 77693994 77693994 C A PQLC1 Missense_Mutation p.K122N 0.29 tolerated(0.1) benign(0.091) TCGA-35-5375-01 18 8784597 8784597 A T SOGA2 Missense_Mutation p.Q496L 0.24 tolerated(0.3) benign(0.005) TCGA-35-5375-01 19 10433905 10433905 G A RAVER1 Nonsense_Mutation p.Q349* 0.47 TCGA-35-5375-01 19 10597426 10597426 C - KEAP1 Frame_Shift_Del p.E593Rfs*2 0.47 TCGA-35-5375-01 19 1095300 1095300 C T POLR2E Silent p.E5E 0.33 TCGA-35-5375-01 19 11170531 11170531 G T SMARCA4 Nonsense_Mutation p.E1580* 0.56 TCGA-35-5375-01 19 11200278 11200278 G C LDLR Silent p.A18A 0.33 TCGA-35-5375-01 19 11200279 11200279 G C LDLR Missense_Mutation p.A19P 0.33 tolerated(0.07) benign(0.372) TCGA-35-5375-01 19 15760829 15760829 G T CYP4F3 Missense_Mutation p.D252Y 0.59 deleterious(0.02) benign(0.049) TCGA-35-5375-01 19 17949156 17949156 G A JAK3 Silent p.P495P 0.69 TCGA-35-5375-01 19 19646177 19646177 G A YJEFN3 Missense_Mutation p.R154H 0.32 deleterious(0.01) benign(0.11) TCGA-35-5375-01 19 19655656 19655656 G T CILP2 Missense_Mutation p.A768S 0.45 tolerated(0.65) benign(0.194) TCGA-35-5375-01 19 22154536 22154536 A T ZNF208 Silent p.L1100L 0.66 TCGA-35-5375-01 19 37117262 37117262 A G ZNF382 Missense_Mutation p.S155G 0.16 tolerated(0.11) benign(0.036) TCGA-35-5375-01 19 38230451 38230451 C G ZNF573 Missense_Mutation p.G314R 0.44 tolerated(0.76) benign(0.008) TCGA-35-5375-01 19 39967129 39967129 G T SUPT5H 3'UTR 0.29 TCGA-35-5375-01 19 44223928 44223928 T A IRGC Missense_Mutation p.D406E 0.56 tolerated(1) benign(0) TCGA-35-5375-01 19 44792868 44792868 A G ZNF235 Silent p.D240D 0.41 TCGA-35-5375-01 19 45303666 45303666 C G CBLC Missense_Mutation p.A464G 0.43 deleterious_low_confidence(0.01) benign(0.121) TCGA-35-5375-01 19 45381862 45381862 G A PVRL2 Intron 0.41 TCGA-35-5375-01 19 49118663 49118663 C G RPL18 Missense_Mutation p.R178T 0.15 deleterious(0) probably_damaging(0.991) TCGA-35-5375-01 19 50099342 50099342 G T PRR12 Nonsense_Mutation p.G584* 0.30 TCGA-35-5375-01 19 50397696 50397696 C A IL4I1 Silent p.G154G 0.30 TCGA-35-5375-01 19 51499412 51499412 C G KLK8 Missense_Mutation p.G274A 0.42 deleterious(0) probably_damaging(0.999) TCGA-35-5375-01 19 51984864 51984864 A T CEACAM18 Silent p.I267I 0.32 TCGA-35-5375-01 19 52272196 52272196 G T FPR2 Missense_Mutation p.W95C 0.39 deleterious(0.02) benign(0.397) TCGA-35-5375-01 19 52327526 52327526 C T FPR3 Silent p.Y175Y 0.31 TCGA-35-5375-01 19 54313990 54313990 C A NLRP12 Missense_Mutation p.G308V 0.39 tolerated(0.06) probably_damaging(0.973) TCGA-35-5375-01 19 54401741 54401741 G T PRKCG Missense_Mutation p.K380N 0.39 deleterious(0) probably_damaging(0.996) TCGA-35-5375-01 19 55106301 55106301 G A LILRA1 Missense_Mutation p.G81D 0.49 deleterious(0.01) benign(0.413) TCGA-35-5375-01 19 56544081 56544081 C T NLRP5 Missense_Mutation p.T794I 0.41 deleterious(0.01) benign(0.177) TCGA-35-5375-01 19 57286693 57286693 G C ZIM2 Missense_Mutation p.T316R 0.14 tolerated(0.2) possibly_damaging(0.694) TCGA-35-5375-01 19 58806789 58806789 G A ZNF8 Missense_Mutation p.A539T 0.28 tolerated(0.24) possibly_damaging(0.763) TCGA-35-5375-01 19 8121327 8121327 T A CCL25 Missense_Mutation p.L90Q 0.39 deleterious(0) probably_damaging(0.969) TCGA-35-5375-01 1 103449747 103449747 C A COL11A1 Nonsense_Mutation p.G835* 0.27 TCGA-35-5375-01 1 109774338 109774338 C T SARS Missense_Mutation p.P226L 0.57 deleterious(0) probably_damaging(1) TCGA-35-5375-01 1 111743052 111743052 G A DENND2D Silent p.F10F 0.44 TCGA-35-5375-01 1 114680557 114680557 G T SYT6 Missense_Mutation p.L126I 0.24 deleterious(0) probably_damaging(0.998) TCGA-35-5375-01 1 117057431 117057431 C G CD58 3'UTR 0.29 TCGA-35-5375-01 1 117209030 117209030 T C IGSF3 5'UTR 0.46 TCGA-35-5375-01 1 118609489 118609489 C A SPAG17 Missense_Mutation p.V807F 0.21 deleterious(0) possibly_damaging(0.678) TCGA-35-5375-01 1 1500234 1500234 G T SSU72 Missense_Mutation p.A48D 0.45 deleterious(0.01) benign(0.441) TCGA-35-5375-01 1 150933451 150933451 T G SETDB1 Silent p.P971P 0.10 TCGA-35-5375-01 1 152671721 152671721 C A LCE2A 3'UTR 0.13 TCGA-35-5375-01 1 153789997 153789997 C A GATAD2B Missense_Mutation p.A251S 0.39 tolerated(0.27) possibly_damaging(0.695) TCGA-35-5375-01 1 153949472 153949472 A T JTB Missense_Mutation p.V34E 0.07 tolerated(0.14) benign(0.016) TCGA-35-5375-01 1 157660129 157660129 T A FCRL3 Missense_Mutation p.T536S 0.47 tolerated(0.17) possibly_damaging(0.622) TCGA-35-5375-01 1 157739907 157739907 G T FCRL2 Missense_Mutation p.S115Y 0.30 deleterious(0) benign(0.271) TCGA-35-5375-01 1 157773709 157773709 C A FCRL1 Missense_Mutation p.G82V 0.10 deleterious(0.02) possibly_damaging(0.903) TCGA-35-5375-01 1 158450117 158450117 G T OR10R2 Silent p.L150L 0.28 TCGA-35-5375-01 1 158612648 158612648 G A SPTA1 Missense_Mutation p.P1521S 0.12 tolerated(0.05) probably_damaging(1) TCGA-35-5375-01 1 158624419 158624419 C G SPTA1 Silent p.L1006L 0.42 TCGA-35-5375-01 1 158636289 158636289 T C SPTA1 Splice_Site p.X680_splice 0.27 TCGA-35-5375-01 1 15986853 15986853 G A RSC1A1 Missense_Mutation p.D164N 0.16 tolerated(0.09) benign(0.027) TCGA-35-5375-01 1 162124198 162124198 G T NOS1AP Missense_Mutation p.V37L 0.25 deleterious(0) benign(0.134) TCGA-35-5375-01 1 162729653 162729653 G T DDR2 Nonsense_Mutation p.E247* 0.52 TCGA-35-5375-01 1 167825402 167825402 C T ADCY10 Splice_Site p.X724_splice 0.44 TCGA-35-5375-01 1 1687735 1687735 C T NADK Missense_Mutation p.G328R 0.17 deleterious(0) probably_damaging(1) TCGA-35-5375-01 1 173486708 173486708 C A SLC9C2 Nonsense_Mutation p.E959* 0.25 TCGA-35-5375-01 1 173516881 173516881 T A SLC9C2 Missense_Mutation p.T502S 0.35 tolerated(0.06) possibly_damaging(0.656) TCGA-35-5375-01 1 175331943 175331943 C A TNR Nonsense_Mutation p.G904* 0.24 TCGA-35-5375-01 1 175331944 175331944 C A TNR Silent p.V903V 0.24 TCGA-35-5375-01 1 176564366 176564366 G T PAPPA2 Silent p.V542V 0.46 TCGA-35-5375-01 1 178489836 178489836 C G TEX35 Missense_Mutation p.Q124E 0.46 tolerated(0.13) possibly_damaging(0.764) TCGA-35-5375-01 1 179533922 179533922 T G NPHS2 Missense_Mutation p.K94T 0.09 deleterious(0.04) benign(0.317) TCGA-35-5375-01 1 179587773 179587773 C A TDRD5 Missense_Mutation p.P291T 0.32 deleterious(0.01) possibly_damaging(0.772) TCGA-35-5375-01 1 181549852 181549852 T A CACNA1E Missense_Mutation p.F297L 0.50 deleterious(0) benign(0.418) TCGA-35-5375-01 1 182357841 182357841 T C GLUL Missense_Mutation p.K11R 0.16 tolerated(0.08) benign(0.095) TCGA-35-5375-01 1 182615840 182615840 C A RGS8 3'UTR 0.51 TCGA-35-5375-01 1 186277271 186277271 C A PRG4 Missense_Mutation p.T807N 0.20 unknown(0) TCGA-35-5375-01 1 192127743 192127743 G T RGS18 5'UTR 0.45 TCGA-35-5375-01 1 19525042 19525042 T C UBR4 Missense_Mutation p.Q214R 0.33 benign(0.006) TCGA-35-5375-01 1 196871560 196871560 G T CFHR4 Missense_Mutation p.C23F 0.54 deleterious(0) probably_damaging(1) TCGA-35-5375-01 1 198711119 198711119 G T PTPRC Missense_Mutation p.S842I 0.40 deleterious(0) probably_damaging(0.995) TCGA-35-5375-01 1 19992706 19992706 G T HTR6 Missense_Mutation p.A154S 0.38 tolerated(0.44) probably_damaging(0.928) TCGA-35-5375-01 1 20009765 20009765 T A TMCO4 Missense_Mutation p.Q558L 0.40 tolerated_low_confidence(0.1) benign(0.002) TCGA-35-5375-01 1 201355596 201355596 G T LAD1 Missense_Mutation p.S298Y 0.17 deleterious(0.04) benign(0.087) TCGA-35-5375-01 1 201358337 201358337 C A LAD1 Missense_Mutation p.A45S 0.49 tolerated(0.46) benign(0.032) TCGA-35-5375-01 1 201844051 201844051 T G IPO9 Silent p.A975A 0.09 TCGA-35-5375-01 1 202565790 202565790 A T SYT2 3'UTR 0.36 TCGA-35-5375-01 1 203192741 203192741 T A CHIT1 Missense_Mutation p.N121I 0.45 tolerated(0.07) possibly_damaging(0.694) TCGA-35-5375-01 1 203467947 203467947 C A OPTC Missense_Mutation p.A170D 0.46 deleterious(0.03) benign(0.314) TCGA-35-5375-01 1 214818865 214818865 G A CENPF Missense_Mutation p.M1984I 0.41 benign(0.173) TCGA-35-5375-01 1 222696210 222696210 T C HHIPL2 Silent p.L636L 0.35 TCGA-35-5375-01 1 228612717 228612717 G A HIST3H3 Silent p.L104L 0.36 TCGA-35-5375-01 1 230795245 230795245 T C COG2 Silent p.C36C 0.40 TCGA-35-5375-01 1 23191570 23191570 G T EPHB2 Nonsense_Mutation p.E390* 0.32 TCGA-35-5375-01 1 236212142 236212142 C A NID1 Missense_Mutation p.D125Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-35-5375-01 1 237551449 237551449 G T RYR2 Missense_Mutation p.V247F 0.24 possibly_damaging(0.761) TCGA-35-5375-01 1 237789019 237789019 G T RYR2 Silent p.G2027G 0.43 TCGA-35-5375-01 1 237972319 237972319 G A RYR2 Missense_Mutation p.C4806Y 0.18 probably_damaging(0.951) TCGA-35-5375-01 1 238048522 238048522 G A ZP4 Silent p.S418S 0.35 TCGA-35-5375-01 1 238090465 238090465 C A RP11-193H5.1 RNA 0.43 TCGA-35-5375-01 1 241661252 241661252 T C FH Missense_Mutation p.K470R 0.12 deleterious(0.04) benign(0.045) TCGA-35-5375-01 1 247737764 247737764 G A GCSAML 3'UTR 0.28 TCGA-35-5375-01 1 248224182 248224182 C A OR2L3 Missense_Mutation p.L67I 0.29 tolerated(0.16) benign(0.048) TCGA-35-5375-01 1 248309310 248309310 C A OR2M5 Silent p.P287P 0.39 TCGA-35-5375-01 1 248525191 248525191 G T OR2T4 Missense_Mutation p.M103I 0.12 tolerated(0.41) benign(0.008) TCGA-35-5375-01 1 248814155 248814155 C A OR2T27 Missense_Mutation p.D11Y 0.15 deleterious(0.02) benign(0.11) TCGA-35-5375-01 1 248844994 248844994 C T OR14I1 Silent p.L204L 0.32 TCGA-35-5375-01 1 27874644 27874644 G C AHDC1 Nonsense_Mutation p.S1328* 0.15 TCGA-35-5375-01 1 39801748 39801748 C A MACF1 Intron 0.13 TCGA-35-5375-01 1 40307580 40307580 T C TRIT1 Missense_Mutation p.I414V 0.12 tolerated(0.12) benign(0.008) TCGA-35-5375-01 1 43831285 43831285 G C ELOVL1 5'UTR 0.47 TCGA-35-5375-01 1 43855444 43855444 C A MED8 5'UTR 0.37 TCGA-35-5375-01 1 54605588 54605588 G T CDCP2 Missense_Mutation p.L319M 0.13 deleterious(0) probably_damaging(0.995) TCGA-35-5375-01 1 6215697 6215697 G A CHD5 Silent p.H156H 0.18 TCGA-35-5375-01 1 6313779 6313779 A G GPR153 Missense_Mutation p.L262P 0.27 deleterious(0) probably_damaging(1) TCGA-35-5375-01 1 67243186 67243186 T A TCTEX1D1 3'UTR 0.58 TCGA-35-5375-01 1 70478698 70478698 C A LRRC7 Silent p.S354S 0.09 TCGA-35-5375-01 1 75037223 75037223 C A C1orf173 Missense_Mutation p.D1391Y 0.15 deleterious(0.03) benign(0.096) TCGA-35-5375-01 1 94014930 94014930 A C FNBP1L Missense_Mutation p.D533A 0.42 deleterious(0) probably_damaging(0.995) TCGA-35-5375-01 1 9714378 9714378 T C C1orf200 Silent p.A39A 0.34 TCGA-35-5375-01 20 23967133 23967133 T A GGTLC1 Missense_Mutation p.H39L 0.44 deleterious(0) probably_damaging(0.998) TCGA-35-5375-01 20 2411636 2411636 G A TGM6 Missense_Mutation p.E644K 0.41 deleterious(0.02) possibly_damaging(0.759) TCGA-35-5375-01 20 30584572 30584572 G T XKR7 Missense_Mutation p.C351F 0.38 deleterious(0) probably_damaging(1) TCGA-35-5375-01 20 40790092 40790092 G T PTPRT Missense_Mutation p.P861H 0.39 tolerated(0.59) possibly_damaging(0.541) TCGA-35-5375-01 20 43138621 43138621 T A SERINC3 Missense_Mutation p.Q175L 0.31 deleterious(0) probably_damaging(1) TCGA-35-5375-01 20 47273727 47273727 C T PREX1 Splice_Site p.X659_splice 0.30 TCGA-35-5375-01 20 47361594 47361594 G C PREX1 Missense_Mutation p.Q128E 0.19 tolerated(0.33) possibly_damaging(0.507) TCGA-35-5375-01 20 47739709 47739709 G C STAU1 Missense_Mutation p.Q296E 0.07 deleterious(0) probably_damaging(0.996) TCGA-35-5375-01 20 48129765 48129765 G T PTGIS Missense_Mutation p.A353D 0.13 deleterious(0) probably_damaging(0.997) TCGA-35-5375-01 20 48525018 48525018 G C SPATA2 Missense_Mutation p.P4A 0.45 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-35-5375-01 20 49366995 49366997 AGA - PARD6B In_Frame_Del p.E365del 0.20 TCGA-35-5375-01 20 52193535 52193535 C T ZNF217 Missense_Mutation p.A590T 0.29 tolerated(0.76) benign(0.003) TCGA-35-5375-01 20 58461889 58461889 T C SYCP2 Missense_Mutation p.R789G 0.16 deleterious(0.01) possibly_damaging(0.849) TCGA-35-5375-01 20 61542492 61542492 C A DIDO1 Missense_Mutation p.G158V 0.71 probably_damaging(1) TCGA-35-5375-01 20 61950436 61950436 C A COL20A1 Missense_Mutation p.P897Q 0.43 deleterious(0.02) possibly_damaging(0.66) TCGA-35-5375-01 20 62608630 62608630 G A SAMD10 Missense_Mutation p.A74V 0.39 tolerated(0.06) benign(0.001) TCGA-35-5375-01 21 11021203 11021203 A T BAGE2 RNA 0.07 TCGA-35-5375-01 21 11039103 11039103 G C BAGE2 RNA 0.04 TCGA-35-5375-01 21 17202921 17202921 G A USP25 Splice_Site p.X588_splice 0.50 TCGA-35-5375-01 21 30308959 30308959 G C LTN1 Missense_Mutation p.H1561D 0.12 deleterious(0.01) benign(0.064) TCGA-35-5375-01 21 37416253 37416263 ACCTAGAAAGA - SETD4 Splice_Site p.X243_splice 0.31 TCGA-35-5375-01 21 37833476 37833476 A T CLDN14 Missense_Mutation p.L173H 0.80 deleterious(0) probably_damaging(0.99) TCGA-35-5375-01 21 38380502 38380502 G T RIPPLY3 Missense_Mutation p.E50D 0.81 tolerated(0.06) possibly_damaging(0.866) TCGA-35-5375-01 21 45563153 45563153 C G C21orf33 Missense_Mutation p.H196Q 0.18 tolerated(0.42) benign(0.153) TCGA-35-5375-01 22 17444635 17444635 G T GAB4 Missense_Mutation p.L521M 0.82 deleterious(0) benign(0.125) TCGA-35-5375-01 22 30221692 30221692 C A ASCC2 Missense_Mutation p.E53D 0.51 deleterious(0.05) benign(0.029) TCGA-35-5375-01 22 36629211 36629211 T A APOL2 5'UTR 0.63 TCGA-35-5375-01 22 37273714 37273714 C T NCF4 3'UTR 0.77 TCGA-35-5375-01 22 50646965 50646965 G T SELO Missense_Mutation p.R253S 0.32 deleterious(0) probably_damaging(1) TCGA-35-5375-01 2 1251177 1251177 C A SNTG2 Missense_Mutation p.L323M 0.12 deleterious(0) probably_damaging(0.987) TCGA-35-5375-01 2 125281892 125281892 A T CNTNAP5 Missense_Mutation p.N446I 0.57 deleterious(0) possibly_damaging(0.878) TCGA-35-5375-01 2 128855128 128855128 T G UGGT1 Missense_Mutation p.L62V 0.38 deleterious(0) benign(0.033) TCGA-35-5375-01 2 132235885 132235885 C A TUBA3D Missense_Mutation p.T51K 0.26 deleterious_low_confidence(0) possibly_damaging(0.736) TCGA-35-5375-01 2 132238318 132238318 T A TUBA3D Missense_Mutation p.F351Y 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-35-5375-01 2 141032006 141032006 C A LRP1B Missense_Mutation p.D4377Y 0.14 possibly_damaging(0.861) TCGA-35-5375-01 2 141108485 141108485 C A LRP1B Missense_Mutation p.G3925W 0.24 probably_damaging(0.965) TCGA-35-5375-01 2 141294231 141294231 C A LRP1B Missense_Mutation p.G2521C 0.31 probably_damaging(0.991) TCGA-35-5375-01 2 141707803 141707803 C T LRP1B Splice_Site p.X1046_splice 0.29 TCGA-35-5375-01 2 157184934 157184934 C A NR4A2 Missense_Mutation p.V326F 0.33 deleterious(0) probably_damaging(1) TCGA-35-5375-01 2 163075642 163075642 G T FAP Missense_Mutation p.P180T 0.47 tolerated(0.1) benign(0.094) TCGA-35-5375-01 2 163361085 163361085 A T KCNH7 Silent p.I332I 0.44 TCGA-35-5375-01 2 167145088 167145088 A G SCN9A Silent p.F391F 0.40 TCGA-35-5375-01 2 175622695 175622695 C T CHRNA1 Silent p.L96L 0.44 TCGA-35-5375-01 2 175742647 175742647 T C CHN1 Missense_Mutation p.Y157C 0.45 tolerated(0.2) benign(0.315) TCGA-35-5375-01 2 179423169 179423169 C T TTN Missense_Mutation p.R29006K 0.40 TCGA-35-5375-01 2 179553472 179553472 T C TTN Missense_Mutation p.K10710R 0.39 TCGA-35-5375-01 2 179579124 179579124 T C TTN Missense_Mutation p.T8793A 0.17 TCGA-35-5375-01 2 196698983 196698983 C G DNAH7 Missense_Mutation p.S3016T 0.40 tolerated(0.69) benign(0.015) TCGA-35-5375-01 2 197708759 197708759 T C PGAP1 Missense_Mutation p.H793R 0.35 tolerated(0.54) benign(0.001) TCGA-35-5375-01 2 201683039 201683039 C T BZW1 Nonsense_Mutation p.Q280* 0.41 TCGA-35-5375-01 2 202582933 202582933 C A ALS2 Nonsense_Mutation p.G1235* 0.31 TCGA-35-5375-01 2 20818972 20818972 C A HS1BP3 Silent p.L318L 0.52 TCGA-35-5375-01 2 218924975 218924975 C A CXCR2P1 RNA 0.40 TCGA-35-5375-01 2 218924976 218924976 C A CXCR2P1 RNA 0.40 TCGA-35-5375-01 2 219507623 219507623 C G ZNF142 Missense_Mutation p.D1206H 0.06 deleterious(0.01) probably_damaging(0.961) TCGA-35-5375-01 2 225635348 225635348 T A DOCK10 Silent p.P2073P 0.35 TCGA-35-5375-01 2 227924926 227924926 G T COL4A4 Missense_Mutation p.P697H 0.35 probably_damaging(0.988) TCGA-35-5375-01 2 228235653 228235653 G A TM4SF20 Missense_Mutation p.A76V 0.33 deleterious(0.01) benign(0.394) TCGA-35-5375-01 2 229890308 229890308 C A PID1 3'UTR 0.36 TCGA-35-5375-01 2 233320856 233320856 C T ALPI 5'UTR 0.60 TCGA-35-5375-01 2 241697805 241697805 G T KIF1A Missense_Mutation p.R852S 0.43 deleterious(0) probably_damaging(0.981) TCGA-35-5375-01 2 24260629 24260630 - T C2orf44 Frame_Shift_Ins p.T579Nfs*6 0.18 TCGA-35-5375-01 2 24261821 24261821 A C C2orf44 Missense_Mutation p.Y182D 0.24 deleterious(0) probably_damaging(0.975) TCGA-35-5375-01 2 3196338 3196338 C A TSSC1 Missense_Mutation p.R279L 0.33 deleterious(0.01) probably_damaging(0.982) TCGA-35-5375-01 2 32640830 32640830 A G BIRC6 Missense_Mutation p.Y824C 0.52 probably_damaging(0.996) TCGA-35-5375-01 2 37513418 37513418 G T PRKD3 Missense_Mutation p.P271Q 0.20 deleterious(0) probably_damaging(0.997) TCGA-35-5375-01 2 44053560 44053560 C A ABCG5 Silent p.V245V 0.34 TCGA-35-5375-01 2 44428593 44428593 T C PPM1B Silent p.F85F 0.04 TCGA-35-5375-01 2 68607461 68607461 G C PLEK Missense_Mutation p.G15A 0.47 deleterious(0) probably_damaging(0.921) TCGA-35-5375-01 2 71043795 71043795 C A CLEC4F Missense_Mutation p.A240S 0.62 tolerated(0.27) possibly_damaging(0.574) TCGA-35-5375-01 2 71043796 71043796 C G CLEC4F Missense_Mutation p.Q239H 0.60 deleterious(0.01) probably_damaging(0.966) TCGA-35-5375-01 2 71590292 71590292 T C ZNF638 Silent p.D463D 0.39 TCGA-35-5375-01 2 71741006 71741006 G T DYSF Silent p.A238A 0.44 TCGA-35-5375-01 2 72360229 72360229 C T CYP26B1 Missense_Mutation p.V357I 0.14 tolerated(0.06) possibly_damaging(0.771) TCGA-35-5375-01 2 74491340 74491340 G A SLC4A5 Missense_Mutation p.R217C 0.17 deleterious(0.03) probably_damaging(1) TCGA-35-5375-01 2 74902162 74902162 G T SEMA4F Missense_Mutation p.E383D 0.51 tolerated(0.25) possibly_damaging(0.728) TCGA-35-5375-01 2 79313628 79313628 G T REG1B Silent p.L62L 0.38 TCGA-35-5375-01 2 79313955 79313955 T A REG1B Missense_Mutation p.T56S 0.06 tolerated(0.63) benign(0.407) TCGA-35-5375-01 2 88828634 88828634 C A TEX37 Missense_Mutation p.P62H 0.18 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-35-5375-01 2 89247082 89247082 G T IGKV1-5 Missense_Mutation p.P30T 0.22 deleterious(0.02) possibly_damaging(0.806) TCGA-35-5375-01 2 96943347 96943347 C T SNRNP200 Nonsense_Mutation p.W1954* 0.36 TCGA-35-5375-01 3 10146346 10146346 C G FANCD2OS Missense_Mutation p.C38S 0.67 tolerated(0.5) benign(0) TCGA-35-5375-01 3 107491504 107491504 G T BBX Missense_Mutation p.M312I 0.37 tolerated(0.35) benign(0.002) TCGA-35-5375-01 3 108355508 108355508 A C DZIP3 Missense_Mutation p.M322L 0.07 deleterious(0.04) benign(0.003) TCGA-35-5375-01 3 111927123 111927123 T A SLC9C1 Missense_Mutation p.I630F 0.43 deleterious(0) possibly_damaging(0.689) TCGA-35-5375-01 3 112356904 112356904 C A CCDC80 Missense_Mutation p.G617W 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-35-5375-01 3 122928165 122928165 G C SEC22A Missense_Mutation p.R34T 0.13 deleterious(0.03) possibly_damaging(0.517) TCGA-35-5375-01 3 123003553 123003553 C T ADCY5 Missense_Mutation p.A1230T 0.11 tolerated(0.23) benign(0.06) TCGA-35-5375-01 3 123699399 123699399 A T ROPN1 5'UTR 0.31 TCGA-35-5375-01 3 126915923 126915923 T C C3orf56 Missense_Mutation p.M132T 0.27 tolerated(0.48) benign(0) TCGA-35-5375-01 3 129185898 129185898 G T IFT122 Missense_Mutation p.R294S 0.27 tolerated(0.57) benign(0.004) TCGA-35-5375-01 3 130992400 130992400 A T NEK11 Missense_Mutation p.K567M 0.64 deleterious(0) probably_damaging(0.94) TCGA-35-5375-01 3 132169588 132169588 A C DNAJC13 Missense_Mutation p.N145T 0.56 tolerated(0.17) benign(0.053) TCGA-35-5375-01 3 136240070 136240070 T C STAG1 Missense_Mutation p.T221A 0.18 deleterious(0) probably_damaging(0.99) TCGA-35-5375-01 3 140282871 140282871 G T CLSTN2 Missense_Mutation p.G851C 0.18 deleterious(0) probably_damaging(1) TCGA-35-5375-01 3 147131424 147131424 T A ZIC1 3'UTR 0.31 TCGA-35-5375-01 3 151105632 151105632 C T MED12L Missense_Mutation p.P1673L 0.52 deleterious(0.01) benign(0.311) TCGA-35-5375-01 3 151105633 151105633 G T MED12L Silent p.P1673P 0.51 TCGA-35-5375-01 3 157213148 157213148 G C VEPH1 5'UTR 0.08 TCGA-35-5375-01 3 164906953 164906953 G A SLITRK3 Nonsense_Mutation p.Q556* 0.63 TCGA-35-5375-01 3 169644740 169644740 A T SAMD7 Missense_Mutation p.E230D 0.21 tolerated(0.09) benign(0.036) TCGA-35-5375-01 3 17051999 17051999 A G PLCL2 Silent p.K261K 0.52 TCGA-35-5375-01 3 173993119 173993119 G A NLGN1 Missense_Mutation p.G221S 0.58 tolerated(0.06) probably_damaging(0.993) TCGA-35-5375-01 3 190930341 190930341 C G OSTN Missense_Mutation p.A7G 0.47 tolerated(0.23) benign(0.239) TCGA-35-5375-01 3 193023452 193023452 C G ATP13A5 Missense_Mutation p.L858F 0.20 deleterious(0) probably_damaging(0.997) TCGA-35-5375-01 3 3097913 3097913 A T CNTN4 3'UTR 0.60 TCGA-35-5375-01 3 38908896 38908896 T A SCN11A Silent p.V1289V 0.63 TCGA-35-5375-01 3 39167012 39167012 T C TTC21A Missense_Mutation p.C469R 0.52 deleterious(0) probably_damaging(0.954) TCGA-35-5375-01 3 49321528 49321528 T - USP4 Frame_Shift_Del p.K811Sfs*32 0.52 TCGA-35-5375-01 3 8787303 8787303 A T CAV3 Missense_Mutation p.K69M 0.63 deleterious(0) probably_damaging(0.999) TCGA-35-5375-01 4 10099383 10099383 G A WDR1 Silent p.C170C 0.70 TCGA-35-5375-01 4 109002741 109002741 C A LEF1 Splice_Site p.X241_splice 0.59 TCGA-35-5375-01 4 156289877 156289877 T C MAP9 Missense_Mutation p.E190G 0.69 deleterious(0.02) benign(0.077) TCGA-35-5375-01 4 184233492 184233492 A T WWC2 Splice_Site p.X1129_splice 0.57 TCGA-35-5375-01 4 2129883 2129883 C G POLN Missense_Mutation p.E647Q 0.71 deleterious(0.02) possibly_damaging(0.823) TCGA-35-5375-01 4 27010119 27010119 G T STIM2 Missense_Mutation p.D415Y 0.52 deleterious(0) probably_damaging(0.999) TCGA-35-5375-01 4 66467388 66467388 C G EPHA5 Missense_Mutation p.G294A 0.46 deleterious(0) probably_damaging(0.991) TCGA-35-5375-01 4 69097043 69097043 T G TMPRSS11B Silent p.G188G 0.50 TCGA-35-5375-01 4 71347098 71347098 G T MUC7 Missense_Mutation p.A213S 0.48 tolerated(0.16) unknown(0) TCGA-35-5375-01 5 101834600 101834600 C A SLCO6A1 5'UTR 0.65 TCGA-35-5375-01 5 110407453 110407453 G T TSLP 5'UTR 0.56 TCGA-35-5375-01 5 110407454 110407454 G T TSLP 5'UTR 0.56 TCGA-35-5375-01 5 110428264 110428264 A T WDR36 Missense_Mutation p.K93M 0.66 deleterious(0.01) benign(0.372) TCGA-35-5375-01 5 112770281 112770281 C A TSSK1B Missense_Mutation p.V86F 0.65 deleterious(0) possibly_damaging(0.77) TCGA-35-5375-01 5 115350132 115350132 A C AQPEP Missense_Mutation p.K786N 0.38 tolerated(0.17) benign(0.145) TCGA-35-5375-01 5 11732322 11732322 C T CTNND2 Missense_Mutation p.G34S 0.07 tolerated(0.49) benign(0.007) TCGA-35-5375-01 5 13830206 13830206 T A DNAH5 Nonsense_Mutation p.K2060* 0.38 TCGA-35-5375-01 5 139060874 139060874 G A CXXC5 Missense_Mutation p.G256S 0.73 deleterious(0.02) probably_damaging(0.921) TCGA-35-5375-01 5 140603219 140603219 C G PCDHB14 Missense_Mutation p.L48V 0.11 tolerated_low_confidence(0.23) benign(0.015) TCGA-35-5375-01 5 140774305 140774305 T A PCDHGA8 Missense_Mutation p.L642H 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-35-5375-01 5 147863923 147863923 T C HTR4 Missense_Mutation p.R366G 0.61 tolerated_low_confidence(0.16) benign(0) TCGA-35-5375-01 5 150856278 150856278 A T SLC36A1 Missense_Mutation p.N317I 0.68 deleterious(0.02) benign(0.192) TCGA-35-5375-01 5 150885377 150885378 - G FAT2 Frame_Shift_Ins p.C4267Lfs*4 0.32 TCGA-35-5375-01 5 150945342 150945342 C T FAT2 Missense_Mutation p.V1051M 0.14 probably_damaging(1) TCGA-35-5375-01 5 161116290 161116290 G A GABRA6 Silent p.R159R 0.69 TCGA-35-5375-01 5 19473547 19473547 C A CDH18 Missense_Mutation p.A721S 0.57 tolerated(0.55) benign(0.207) TCGA-35-5375-01 5 31316316 31316316 T G CDH6 Missense_Mutation p.N464K 0.11 tolerated(0.16) benign(0.038) TCGA-35-5375-01 5 33457373 33457373 G C TARS Silent p.T316T 0.27 TCGA-35-5375-01 5 33588881 33588881 C T ADAMTS12 Silent p.A896A 0.10 TCGA-35-5375-01 5 35991414 35991414 C T UGT3A1 5'UTR 0.09 TCGA-35-5375-01 5 37183179 37183179 A C C5orf42 Missense_Mutation p.S1702A 0.09 tolerated(0.25) benign(0.311) TCGA-35-5375-01 5 40764924 40764924 C G PRKAA1 Missense_Mutation p.S428T 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-35-5375-01 5 54401361 54401361 G T GZMA Missense_Mutation p.V44F 0.32 deleterious(0) probably_damaging(0.98) TCGA-35-5375-01 5 5473822 5473822 G T KIAA0947 Missense_Mutation p.C2125F 0.53 deleterious(0) probably_damaging(0.982) TCGA-35-5375-01 5 70813227 70813227 C G BDP1 Missense_Mutation p.Q1647E 0.69 tolerated(0.1) benign(0.073) TCGA-35-5375-01 5 76028843 76028843 G T F2R Missense_Mutation p.G265C 0.64 deleterious(0) probably_damaging(0.928) TCGA-35-5375-01 5 7869242 7869242 C G MTRR 5'UTR 0.26 TCGA-35-5375-01 5 96315308 96315308 A T LNPEP Silent p.P162P 0.73 TCGA-35-5375-01 6 100838549 100838549 C T SIM1 Silent p.S663S 0.23 TCGA-35-5375-01 6 10586809 10586809 C T GCNT2 Intron 0.16 TCGA-35-5375-01 6 107113910 107113910 T C QRSL1 3'UTR 0.32 TCGA-35-5375-01 6 107113911 107113911 G T QRSL1 3'UTR 0.33 TCGA-35-5375-01 6 107533454 107533454 C G PDSS2 Silent p.S245S 0.21 TCGA-35-5375-01 6 117128030 117128030 G A GPRC6A Nonsense_Mutation p.Q280* 0.38 TCGA-35-5375-01 6 123039058 123039062 ACGGA - PKIB Frame_Shift_Del p.G48Lfs*21 0.14 TCGA-35-5375-01 6 1313599 1313599 G T FOXQ1 Silent p.A220A 0.26 TCGA-35-5375-01 6 132785215 132785215 C A STX7 Splice_Site p.X204_splice 0.35 TCGA-35-5375-01 6 132909899 132909899 G T TAAR5 Nonsense_Mutation p.Y309* 0.40 TCGA-35-5375-01 6 135239557 135239557 T A ALDH8A1 Missense_Mutation p.H487L 0.40 deleterious(0) benign(0.185) TCGA-35-5375-01 6 135521439 135521439 C T MYB Silent p.P612P 0.36 TCGA-35-5375-01 6 137191109 137191109 C G PEX7 Missense_Mutation p.L239V 0.13 tolerated(0.29) benign(0.009) TCGA-35-5375-01 6 144999682 144999682 G T UTRN Missense_Mutation p.W2540C 0.62 deleterious(0) probably_damaging(1) TCGA-35-5375-01 6 145051568 145051568 G A UTRN Missense_Mutation p.D2629N 0.28 deleterious(0) benign(0.049) TCGA-35-5375-01 6 146350535 146350535 G T GRM1 5'UTR 0.13 TCGA-35-5375-01 6 146755937 146755937 G C GRM1 3'UTR 0.41 TCGA-35-5375-01 6 147588262 147588262 C A STXBP5 Missense_Mutation p.L225I 0.34 deleterious(0.02) benign(0.078) TCGA-35-5375-01 6 150343322 150343322 C A RAET1L Missense_Mutation p.R48L 0.36 tolerated(0.22) benign(0.026) TCGA-35-5375-01 6 151674269 151674269 C T AKAP12 Silent p.H1581H 0.17 TCGA-35-5375-01 6 152419965 152419965 C A ESR1 Missense_Mutation p.A551E 0.33 tolerated(0.29) benign(0.001) TCGA-35-5375-01 6 152647436 152647436 C G SYNE1 Missense_Mutation p.L5096F 0.06 probably_damaging(0.999) TCGA-35-5375-01 6 160328457 160328457 G T MAS1 Missense_Mutation p.W157L 0.33 deleterious(0) probably_damaging(0.989) TCGA-35-5375-01 6 161135923 161135923 C G PLG Missense_Mutation p.H215Q 0.20 deleterious(0.04) possibly_damaging(0.856) TCGA-35-5375-01 6 17688767 17688767 A T NUP153 Missense_Mutation p.V65E 0.22 tolerated(1) benign(0.002) TCGA-35-5375-01 6 2623651 2623651 G C C6orf195 3'UTR 0.22 TCGA-35-5375-01 6 28056916 28056916 G A ZNF165 Missense_Mutation p.E376K 0.31 deleterious(0) possibly_damaging(0.67) TCGA-35-5375-01 6 28269749 28269749 A T PGBD1 Silent p.P706P 0.34 TCGA-35-5375-01 6 29141566 29141566 G T OR2J2 Missense_Mutation p.V52L 0.17 tolerated(1) benign(0.001) TCGA-35-5375-01 6 29640292 29640292 G C ZFP57 Missense_Mutation p.I532M 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.466) TCGA-35-5375-01 6 30955259 30955259 C G MUC21 Missense_Mutation p.T436S 0.07 tolerated(0.58) unknown(0) TCGA-35-5375-01 6 31827407 31827407 T A NEU1 3'UTR 0.17 TCGA-35-5375-01 6 3225666 3225666 G A TUBB2B Silent p.T219T 0.16 TCGA-35-5375-01 6 32976019 32976019 G T HLA-DOA Nonsense_Mutation p.Y34* 0.43 TCGA-35-5375-01 6 33156809 33156809 C A COL11A2 Missense_Mutation p.R130L 0.18 probably_damaging(0.931) TCGA-35-5375-01 6 33286531 33286531 C G DAXX Missense_Mutation p.D738H 0.07 deleterious(0) probably_damaging(0.998) TCGA-35-5375-01 6 35842080 35842080 A C SRPK1 Missense_Mutation p.L172R 0.22 deleterious(0) probably_damaging(1) TCGA-35-5375-01 6 38758183 38758183 T C DNAH8 Splice_Site p.X710_splice 0.20 TCGA-35-5375-01 6 40399544 40399544 G A LRFN2 Silent p.L437L 0.16 TCGA-35-5375-01 6 41708341 41708341 C A PGC Missense_Mutation p.G219C 0.48 deleterious(0.03) possibly_damaging(0.64) TCGA-35-5375-01 6 42689590 42689590 G T PRPH2 Silent p.I161I 0.59 TCGA-35-5375-01 6 43226967 43226967 C T TTBK1 Missense_Mutation p.T403I 0.09 probably_damaging(0.987) TCGA-35-5375-01 6 44150872 44150872 C G CAPN11 Missense_Mutation p.N678K 0.28 tolerated(0.17) probably_damaging(1) TCGA-35-5375-01 6 44371573 44371573 A G CDC5L Silent p.R189R 0.25 TCGA-35-5375-01 6 54735153 54735153 G A FAM83B Missense_Mutation p.E37K 0.56 tolerated(0.27) benign(0.297) TCGA-35-5375-01 6 55147091 55147091 G T HCRTR2 Missense_Mutation p.D392Y 0.33 deleterious(0.03) benign(0.113) TCGA-35-5375-01 6 55198734 55198734 A G GFRAL Missense_Mutation p.N103S 0.17 tolerated(0.41) benign(0.009) TCGA-35-5375-01 6 70608846 70608846 C T COL19A1 Missense_Mutation p.S33L 0.21 tolerated(0.45) unknown(0) TCGA-35-5375-01 6 75884799 75884799 A T COL12A1 Missense_Mutation p.S889T 0.20 probably_damaging(0.994) TCGA-35-5375-01 6 80724274 80724274 C A TTK Missense_Mutation p.T360K 0.32 tolerated(0.21) benign(0.217) TCGA-35-5375-01 6 80749412 80749412 G C TTK Splice_Site p.X711_splice 0.13 TCGA-35-5375-01 6 90402561 90402561 G A MDN1 Silent p.A3396A 0.56 TCGA-35-5375-01 7 141750533 141750533 A T MGAM Nonsense_Mutation p.K892* 0.32 TCGA-35-5375-01 7 142013344 142013344 G T TRBV4-1 Missense_Mutation p.V67F 0.42 tolerated(0.66) benign(0.006) TCGA-35-5375-01 7 142161992 142161992 G A TRBV6-6 Missense_Mutation p.L95F 0.41 deleterious(0.02) possibly_damaging(0.901) TCGA-35-5375-01 7 142481339 142481339 A T PRSS3P2 RNA 0.36 TCGA-35-5375-01 7 150325196 150325196 G T GIMAP6 Silent p.R164R 0.36 TCGA-35-5375-01 7 15458244 15458244 G A AGMO Missense_Mutation p.P183L 0.76 deleterious(0) probably_damaging(0.997) TCGA-35-5375-01 7 157023909 157023909 G A UBE3C Missense_Mutation p.G790E 0.44 deleterious(0) probably_damaging(0.986) TCGA-35-5375-01 7 77016752 77016752 C G GSAP Missense_Mutation p.L127F 0.14 deleterious(0) probably_damaging(0.993) TCGA-35-5375-01 7 82585020 82585020 C T PCLO Missense_Mutation p.G1750E 0.29 unknown(0) TCGA-35-5375-01 7 92300778 92300778 C A CDK6 Missense_Mutation p.W203C 0.24 deleterious(0) probably_damaging(1) TCGA-35-5375-01 7 92300779 92300779 C G CDK6 Missense_Mutation p.W203S 0.24 deleterious(0) probably_damaging(0.999) TCGA-35-5375-01 7 94039086 94039086 C A COL1A2 Missense_Mutation p.P330T 0.25 unknown(0) TCGA-35-5375-01 7 99097796 99097796 T A ZNF394 5'UTR 0.56 TCGA-35-5375-01 7 99786109 99786109 C T STAG3 Missense_Mutation p.S156F 0.51 tolerated(0.07) possibly_damaging(0.57) TCGA-35-5375-01 8 101153863 101153863 C G FBXO43 Missense_Mutation p.V207L 0.10 deleterious(0.04) benign(0.049) TCGA-35-5375-01 8 101276385 101276385 C T RNF19A Missense_Mutation p.V449I 0.23 deleterious(0.04) probably_damaging(0.992) TCGA-35-5375-01 8 131199494 131199494 T C ASAP1 Missense_Mutation p.Y173C 0.29 deleterious(0) probably_damaging(0.984) TCGA-35-5375-01 8 132968101 132968102 - G EFR3A Frame_Shift_Ins p.R244Sfs*9 0.29 TCGA-35-5375-01 8 134203380 134203380 G A WISP1 5'UTR 0.25 TCGA-35-5375-01 8 139153548 139153548 A T FAM135B Missense_Mutation p.L1228H 0.18 deleterious(0) probably_damaging(0.998) TCGA-35-5375-01 8 144732128 144732138 ACTCACATAGG - ZNF623 Frame_Shift_Del p.S30Dfs*16 0.29 TCGA-35-5375-01 8 145742150 145742150 T G RECQL4 Splice_Site p.X119_splice 0.19 TCGA-35-5375-01 8 2017597 2017597 G T MYOM2 Silent p.S258S 0.24 TCGA-35-5375-01 8 22548806 22548806 G - EGR3 Frame_Shift_Del p.P115Rfs*76 0.11 TCGA-35-5375-01 8 24298540 24298540 T C ADAM7 5'UTR 0.16 TCGA-35-5375-01 8 30464658 30464658 C - GTF2E2 Frame_Shift_Del p.D187Tfs*6 0.31 TCGA-35-5375-01 8 32621438 32621438 G T NRG1 Missense_Mutation p.V486L 0.33 tolerated(0.7) probably_damaging(0.948) TCGA-35-5375-01 8 35583900 35583900 C A UNC5D Missense_Mutation p.H512N 0.25 tolerated(0.36) benign(0.048) TCGA-35-5375-01 8 39840251 39840251 C A IDO2 Missense_Mutation p.D145E 0.45 deleterious(0) probably_damaging(0.994) TCGA-35-5375-01 8 52321964 52321964 G A PXDNL Silent p.P740P 0.54 TCGA-35-5375-01 8 57876473 57876473 C A IMPAD1 Missense_Mutation p.G320V 0.18 deleterious(0) probably_damaging(1) TCGA-35-5375-01 8 61778121 61778121 G T CHD7 Missense_Mutation p.G2875C 0.63 possibly_damaging(0.628) TCGA-35-5375-01 8 67813464 67813464 G T MCMDC2 Missense_Mutation p.L550F 0.11 deleterious(0.01) possibly_damaging(0.815) TCGA-35-5375-01 8 71510383 71510383 C G TRAM1 Missense_Mutation p.E99Q 0.12 deleterious(0) probably_damaging(0.998) TCGA-35-5375-01 8 71553275 71553275 T G LACTB2 Silent p.P201P 0.54 TCGA-35-5375-01 8 73849991 73849991 A T KCNB2 Missense_Mutation p.R801W 0.64 deleterious_low_confidence(0.05) possibly_damaging(0.874) TCGA-35-5375-01 8 86163066 86163066 C T CA13 Silent p.L45L 0.34 TCGA-35-5375-01 8 86388024 86388024 T C CA2 Intron 0.28 TCGA-35-5375-01 9 104357257 104357257 C T PPP3R2 5'UTR 0.77 TCGA-35-5375-01 9 104449372 104449372 G C GRIN3A Missense_Mutation p.C270W 0.50 deleterious(0) probably_damaging(0.999) TCGA-35-5375-01 9 123206000 123206000 C A CDK5RAP2 Missense_Mutation p.A1016S 0.58 tolerated(0.42) possibly_damaging(0.739) TCGA-35-5375-01 9 125273352 125273352 C T OR1J2 Missense_Mutation p.S91L 0.63 deleterious_low_confidence(0.01) benign(0.032) TCGA-35-5375-01 9 134003738 134003738 G T NUP214 Missense_Mutation p.L87F 0.63 unknown(0) TCGA-35-5375-01 9 135206681 135206681 T C SETX Missense_Mutation p.I331M 0.52 deleterious(0) possibly_damaging(0.836) TCGA-35-5375-01 9 139395153 139395153 C A NOTCH1 Nonsense_Mutation p.E1929* 0.51 TCGA-35-5375-01 9 18777726 18777726 C T ADAMTSL1 Silent p.L1167L 0.31 TCGA-35-5375-01 9 19369895 19369895 A C DENND4C Missense_Mutation p.E1813A 0.29 deleterious(0.02) benign(0.272) TCGA-35-5375-01 9 34249927 34249927 G A UBAP1 Missense_Mutation p.A476T 0.16 deleterious(0.01) probably_damaging(0.988) TCGA-35-5375-01 9 84532864 84532864 C A SPATA31D5P RNA 0.21 TCGA-35-5375-01 9 90321569 90321569 G C DAPK1 Missense_Mutation p.E1195Q 0.12 deleterious(0.01) probably_damaging(0.992) TCGA-35-5375-01 9 96324522 96324522 T G FAM120A Missense_Mutation p.I994S 0.63 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-35-5375-01 X 101581408 101581408 G C NXF2 Missense_Mutation p.A621P 0.70 deleterious(0.03) probably_damaging(0.995) TCGA-35-5375-01 X 108718455 108718455 G T GUCY2F Missense_Mutation p.H237Q 0.79 tolerated(0.62) benign(0.023) TCGA-35-5375-01 X 120094450 120094450 G T CT47A6 Silent p.P211P 0.84 TCGA-35-5375-01 X 127185207 127185207 G C ACTRT1 Missense_Mutation p.P327A 0.32 tolerated(0.32) benign(0.029) TCGA-35-5375-01 X 129479160 129479160 A T SLC25A14 Missense_Mutation p.Q27L 0.30 deleterious(0.05) benign(0) TCGA-35-5375-01 X 134713798 134713798 A T DDX26B Silent p.P698P 0.87 TCGA-35-5375-01 X 135487998 135487998 G T GPR112 Missense_Mutation p.M2934I 0.74 tolerated(0.12) benign(0.036) TCGA-35-5375-01 X 140270799 140270799 G T LDOC1 Missense_Mutation p.D136E 0.24 tolerated_low_confidence(0.26) unknown(0) TCGA-35-5375-01 X 153927568 153927568 C A GAB3 Splice_Site p.X449_splice 0.42 TCGA-35-5375-01 X 21900704 21900704 C T MBTPS2 Silent p.I497I 0.18 TCGA-35-5375-01 X 35820657 35820657 A T MAGEB16 Missense_Mutation p.Q115L 0.60 deleterious(0.01) benign(0.031) TCGA-35-5375-01 X 36122632 36122632 G T CHDC2 Missense_Mutation p.R290L 0.51 deleterious(0) probably_damaging(0.979) TCGA-35-5375-01 X 44949010 44949010 G T KDM6A Missense_Mutation p.G1191C 0.53 deleterious(0) probably_damaging(0.995) TCGA-38-4625-01 10 103783277 103783277 G C C10orf76 Missense_Mutation p.A209G 0.33 deleterious(0) possibly_damaging(0.616) TCGA-38-4625-01 10 118313347 118313347 A G PNLIP Missense_Mutation p.T190A 0.49 deleterious(0) possibly_damaging(0.845) TCGA-38-4625-01 10 118368610 118368610 C T PNLIPRP1 Silent p.L462L 0.09 TCGA-38-4625-01 10 123845207 123845207 G A TACC2 Silent p.A1064A 0.14 TCGA-38-4625-01 10 128202476 128202476 G C C10orf90 Missense_Mutation p.Q19E 0.45 deleterious(0.02) benign(0.154) TCGA-38-4625-01 10 135012104 135012104 G T KNDC1 Nonsense_Mutation p.E698* 0.55 TCGA-38-4625-01 10 135352538 135352538 C G CYP2E1 3'UTR 0.12 TCGA-38-4625-01 10 14816766 14816766 G C FAM107B 5'UTR 0.29 TCGA-38-4625-01 10 15646309 15646309 G A ITGA8 Silent p.L672L 0.12 TCGA-38-4625-01 10 22700044 22700044 G A SPAG6 Missense_Mutation p.G467S 0.23 tolerated(0.05) probably_damaging(0.968) TCGA-38-4625-01 10 22700045 22700045 G T SPAG6 Missense_Mutation p.G467V 0.23 deleterious(0.03) probably_damaging(0.992) TCGA-38-4625-01 10 25887278 25887278 G T GPR158 Missense_Mutation p.S908I 0.20 deleterious(0) probably_damaging(0.977) TCGA-38-4625-01 10 25887972 25887972 C A GPR158 Missense_Mutation p.H1139Q 0.30 tolerated(0.46) benign(0.002) TCGA-38-4625-01 10 27456180 27456180 C T MASTL Missense_Mutation p.P321S 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-38-4625-01 10 38120853 38120853 G C ZNF248 Nonsense_Mutation p.S477* 0.34 TCGA-38-4625-01 10 50827905 50827905 C A CHAT Silent p.G174G 0.46 TCGA-38-4625-01 10 50827906 50827906 C A CHAT Missense_Mutation p.L175I 0.46 tolerated(0.32) benign(0.113) TCGA-38-4625-01 10 5956140 5956140 G T FBXO18 Splice_Site p.X486_splice 0.24 TCGA-38-4625-01 10 60994099 60994099 G T PHYHIPL Nonsense_Mutation p.E48* 0.26 TCGA-38-4625-01 10 74882005 74882005 C G NUDT13 Missense_Mutation p.S99C 0.21 deleterious(0) probably_damaging(0.988) TCGA-38-4625-01 10 78316967 78316967 G T C10orf11 Missense_Mutation p.G173V 0.46 deleterious(0.02) probably_damaging(0.909) TCGA-38-4625-01 10 88911171 88911171 C T FAM35A Silent p.I20I 0.11 TCGA-38-4625-01 11 101786111 101786111 G C KIAA1377 Missense_Mutation p.E32D 0.18 tolerated(0.61) benign(0.004) TCGA-38-4625-01 11 1026437 1026437 G T MUC6 Silent p.G812G 0.28 TCGA-38-4625-01 11 102742386 102742386 C G MMP12 RNA 0.29 TCGA-38-4625-01 11 107832669 107832669 C T RAB39A Intron 0.21 TCGA-38-4625-01 11 108709290 108709290 G T DDX10 Nonsense_Mutation p.E695* 0.14 TCGA-38-4625-01 11 108811239 108811239 G C DDX10 3'UTR 0.29 TCGA-38-4625-01 11 112065407 112065407 G T BCO2 Missense_Mutation p.G222V 0.15 tolerated(0.13) possibly_damaging(0.651) TCGA-38-4625-01 11 113675615 113675615 C A USP28 Missense_Mutation p.D852Y 0.22 deleterious(0.05) probably_damaging(0.999) TCGA-38-4625-01 11 114569276 114569276 C A NXPE2 Silent p.I214I 0.15 TCGA-38-4625-01 11 118376994 118376994 G C KMT2A Missense_Mutation p.A3463P 0.19 possibly_damaging(0.748) TCGA-38-4625-01 11 118769541 118769541 G A BCL9L Silent p.N1361N 0.16 TCGA-38-4625-01 11 119020801 119020801 C A ABCG4 Missense_Mutation p.N42K 0.27 deleterious(0.02) benign(0.045) TCGA-38-4625-01 11 121391515 121391515 A T SORL1 Missense_Mutation p.Q454L 0.24 tolerated(0.13) benign(0.016) TCGA-38-4625-01 11 124440496 124440496 G T OR8A1 Missense_Mutation p.G178C 0.10 deleterious(0.01) probably_damaging(0.93) TCGA-38-4625-01 11 125891246 125891246 C A CDON Silent p.L82L 0.21 TCGA-38-4625-01 11 1262982 1262982 C A MUC5B Silent p.T1624T 0.47 TCGA-38-4625-01 11 1272848 1272848 T A MUC5B Missense_Mutation p.L4913Q 0.30 unknown(0) TCGA-38-4625-01 11 1279598 1279598 G T MUC5B Splice_Site p.X5531_splice 0.13 TCGA-38-4625-01 11 132184465 132184465 G T NTM Missense_Mutation p.G268W 0.15 deleterious(0) probably_damaging(0.99) TCGA-38-4625-01 11 18194960 18194960 G C MRGPRX4 Missense_Mutation p.G53R 0.43 deleterious(0) probably_damaging(0.96) TCGA-38-4625-01 11 20112467 20112467 T C NAV2 Missense_Mutation p.L1911S 0.10 deleterious(0) probably_damaging(0.998) TCGA-38-4625-01 11 20178654 20178654 G T DBX1 Missense_Mutation p.Q201K 0.11 deleterious(0.01) possibly_damaging(0.709) TCGA-38-4625-01 11 20178655 20178655 G T DBX1 Missense_Mutation p.F200L 0.11 deleterious(0) benign(0.105) TCGA-38-4625-01 11 20414491 20414491 G T PRMT3 Nonsense_Mutation p.E116* 0.35 TCGA-38-4625-01 11 22296152 22296152 G T ANO5 Missense_Mutation p.R758L 0.36 deleterious(0) probably_damaging(0.99) TCGA-38-4625-01 11 26568988 26568988 C T ANO3 Silent p.L394L 0.03 TCGA-38-4625-01 11 294668 294668 C G ATHL1 Missense_Mutation p.D711E 0.14 tolerated_low_confidence(0.55) benign(0) TCGA-38-4625-01 11 30439175 30439175 G T MPPED2 Missense_Mutation p.P181Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-38-4625-01 11 31531344 31531344 G T ELP4 Missense_Mutation p.A5S 0.23 tolerated_low_confidence(0.12) benign(0.003) TCGA-38-4625-01 11 32634980 32634980 C T CCDC73 Missense_Mutation p.D962N 0.38 tolerated(0.37) benign(0.014) TCGA-38-4625-01 11 36596358 36596358 C T RAG1 Missense_Mutation p.P502S 0.38 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-38-4625-01 11 36615026 36615026 G T RAG2 Silent p.A231A 0.14 TCGA-38-4625-01 11 43465039 43465039 G C TTC17 Missense_Mutation p.G806R 0.29 deleterious(0) probably_damaging(1) TCGA-38-4625-01 11 4592738 4592738 G T C11orf40 Missense_Mutation p.A190E 0.41 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-38-4625-01 11 45950418 45950418 C T GYLTL1B 3'UTR 0.20 TCGA-38-4625-01 11 5221702 5221702 G C OR51V1 Missense_Mutation p.L77V 0.41 tolerated(0.36) benign(0.02) TCGA-38-4625-01 11 5274632 5274632 G T HBG2 Missense_Mutation p.L107M 0.31 deleterious(0) probably_damaging(0.987) TCGA-38-4625-01 11 5274633 5274633 G T HBG2 Silent p.L106L 0.31 TCGA-38-4625-01 11 55135609 55135609 G T OR4A15 Missense_Mutation p.G84C 0.31 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-38-4625-01 11 55735551 55735551 T A OR10AG1 Missense_Mutation p.K130I 0.34 deleterious(0.01) possibly_damaging(0.478) TCGA-38-4625-01 11 55904311 55904311 T C OR8J3 Missense_Mutation p.N295S 0.18 deleterious(0) benign(0.012) TCGA-38-4625-01 11 56237377 56237377 T A OR5M3 Silent p.I199I 0.17 TCGA-38-4625-01 11 56258337 56258337 G T OR5M8 Silent p.P170P 0.14 TCGA-38-4625-01 11 56344905 56344905 A T OR5M10 Missense_Mutation p.F98Y 0.14 tolerated(0.07) possibly_damaging(0.808) TCGA-38-4625-01 11 56431719 56431719 C A OR5AR1 Silent p.A186A 0.27 TCGA-38-4625-01 11 56468595 56468595 G T OR9G1 Silent p.L244L 0.04 TCGA-38-4625-01 11 57382045 57382045 C T SERPING1 Silent p.P498P 0.10 TCGA-38-4625-01 11 59814583 59814583 G T OOSP2 3'UTR 0.15 TCGA-38-4625-01 11 64331817 64331817 G T SLC22A11 Missense_Mutation p.G287C 0.19 deleterious(0.02) probably_damaging(1) TCGA-38-4625-01 11 64536732 64536732 C T SF1 Missense_Mutation p.A373T 0.19 deleterious(0) probably_damaging(1) TCGA-38-4625-01 11 64597439 64597439 G A CDC42BPG Silent p.L1157L 0.12 TCGA-38-4625-01 11 65048471 65048471 C T POLA2 Silent p.V251V 0.25 TCGA-38-4625-01 11 66333189 66333189 C A CTSF Missense_Mutation p.C333F 0.17 deleterious(0) probably_damaging(0.999) TCGA-38-4625-01 11 6651357 6651357 C T DCHS1 Silent p.E1556E 0.64 TCGA-38-4625-01 11 6662213 6662213 C A DCHS1 Missense_Mutation p.G211V 0.19 tolerated(0.07) possibly_damaging(0.781) TCGA-38-4625-01 11 67051244 67051244 G T ADRBK1 Missense_Mutation p.K465N 0.21 deleterious(0.03) possibly_damaging(0.905) TCGA-38-4625-01 11 6806724 6806724 A G OR2AG1 Silent p.A152A 0.08 TCGA-38-4625-01 11 68747704 68747704 G T MRGPRD Missense_Mutation p.P251H 0.14 tolerated(0.15) possibly_damaging(0.838) TCGA-38-4625-01 11 70052581 70052581 G T FADD 3'UTR 0.18 TCGA-38-4625-01 11 71208569 71208569 G T NADSYN1 Missense_Mutation p.G602V 0.15 deleterious(0) probably_damaging(1) TCGA-38-4625-01 11 76376990 76376990 G T LRRC32 Silent p.P3P 0.19 TCGA-38-4625-01 11 76870504 76870504 G C MYO7A Missense_Mutation p.E339Q 0.22 tolerated(0.07) benign(0.006) TCGA-38-4625-01 11 82643734 82643734 G C C11orf82 Missense_Mutation p.D452H 0.14 deleterious(0.01) possibly_damaging(0.728) TCGA-38-4625-01 11 92620196 92620196 C T FAT3 Missense_Mutation p.T4323I 0.32 benign(0.01) TCGA-38-4625-01 12 100042354 100042354 A - FAM71C Frame_Shift_Del p.K136Nfs*5 0.34 TCGA-38-4625-01 12 108589971 108589971 G T WSCD2 Missense_Mutation p.R121L 0.24 deleterious(0.03) benign(0.198) TCGA-38-4625-01 12 11286554 11286554 C T TAS2R30 Nonsense_Mutation p.W97* 0.43 TCGA-38-4625-01 12 120636414 120636414 G C RPLP0 Missense_Mutation p.I198M 0.19 tolerated(0.08) benign(0.206) TCGA-38-4625-01 12 124293409 124293409 T A DNAH10 Missense_Mutation p.L900Q 0.17 benign(0.234) TCGA-38-4625-01 12 133357453 133357453 C T GOLGA3 Silent p.K1171K 0.11 TCGA-38-4625-01 12 26839527 26839527 C A ITPR2 Missense_Mutation p.Q345H 0.30 tolerated(0.08) possibly_damaging(0.722) TCGA-38-4625-01 12 2760919 2760919 C A CACNA1C Missense_Mutation p.F1401L 0.46 deleterious(0.04) possibly_damaging(0.807) TCGA-38-4625-01 12 27869349 27869349 G - MRPS35 Frame_Shift_Del p.G94Afs*10 0.31 TCGA-38-4625-01 12 29592260 29592260 C A OVCH1 Splice_Site p.X1088_splice 0.12 TCGA-38-4625-01 12 29665010 29665010 G T TMTC1 Missense_Mutation p.A825D 0.13 deleterious(0) probably_damaging(0.999) TCGA-38-4625-01 12 29736464 29736464 A T TMTC1 Missense_Mutation p.C432S 0.39 tolerated(0.24) benign(0.014) TCGA-38-4625-01 12 33529782 33529782 G T SYT10 Missense_Mutation p.P519T 0.11 tolerated(0.37) benign(0.113) TCGA-38-4625-01 12 368910 368910 C A SLC6A13 Intron 0.43 TCGA-38-4625-01 12 45001031 45001031 G T NELL2 Silent p.G578G 0.25 TCGA-38-4625-01 12 49952452 49952452 C G MCRS1 Missense_Mutation p.E468Q 0.07 tolerated(0.06) possibly_damaging(0.891) TCGA-38-4625-01 12 49959936 49959936 C G MCRS1 Missense_Mutation p.E38Q 0.35 tolerated_low_confidence(0.07) probably_damaging(0.997) TCGA-38-4625-01 12 50037148 50037148 G T PRPF40B Missense_Mutation p.R783L 0.12 deleterious_low_confidence(0.05) benign(0.049) TCGA-38-4625-01 12 50490683 50490683 C T SMARCD1 Silent p.F440F 0.31 TCGA-38-4625-01 12 51034617 51034617 G T DIP2B Missense_Mutation p.D95Y 0.09 deleterious(0) possibly_damaging(0.859) TCGA-38-4625-01 12 53009975 53009975 C A KRT73 Nonsense_Mutation p.E213* 0.17 TCGA-38-4625-01 12 55820133 55820133 G T OR6C76 Silent p.T32T 0.26 TCGA-38-4625-01 12 57650263 57650263 T A R3HDM2 Silent p.P813P 0.18 TCGA-38-4625-01 12 58126629 58126629 C T AGAP2 Silent p.E561E 0.15 TCGA-38-4625-01 12 66856730 66856730 C A GRIP1 Missense_Mutation p.R339L 0.08 tolerated(0.07) probably_damaging(0.972) TCGA-38-4625-01 12 6707148 6707148 C A CHD4 Missense_Mutation p.D602Y 0.41 deleterious(0) probably_damaging(0.953) TCGA-38-4625-01 12 70989842 70989842 G A PTPRB Silent p.T415T 0.23 TCGA-38-4625-01 12 71054789 71054789 T A PTPRR Missense_Mutation p.Q566L 0.23 deleterious(0.02) benign(0.399) TCGA-38-4625-01 12 73046866 73046866 G T TRHDE Missense_Mutation p.A927S 0.18 deleterious(0.05) benign(0.177) TCGA-38-4625-01 12 7585988 7585988 C A CD163L1 Missense_Mutation p.V143F 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-38-4625-01 12 80733009 80733009 G T OTOGL Missense_Mutation p.R1663L 0.27 tolerated(0.31) benign(0.039) TCGA-38-4625-01 12 92814926 92814926 G A CLLU1OS Missense_Mutation p.P56S 0.13 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-38-4625-01 12 93213135 93213135 C A EEA1 Missense_Mutation p.E559D 0.12 tolerated(0.18) probably_damaging(0.997) TCGA-38-4625-01 12 97093849 97093849 A C C12orf55 Missense_Mutation p.Y2151S 0.10 tolerated(0.29) benign(0.094) TCGA-38-4625-01 12 99097167 99097167 A T APAF1 Missense_Mutation p.S829C 0.16 tolerated(0.21) benign(0.002) TCGA-38-4625-01 13 110434665 110434665 C A IRS2 Missense_Mutation p.G1246C 0.56 deleterious(0) probably_damaging(0.999) TCGA-38-4625-01 13 111119407 111119407 G C COL4A2 Missense_Mutation p.G687R 0.23 possibly_damaging(0.546) TCGA-38-4625-01 13 26927935 26927935 G T CDK8 Missense_Mutation p.R125L 0.33 tolerated(0.08) benign(0.007) TCGA-38-4625-01 13 27255391 27255391 C T WASF3 Missense_Mutation p.P306L 0.42 tolerated(0.32) benign(0.105) TCGA-38-4625-01 13 29008254 29008254 G T FLT1 Missense_Mutation p.T206N 0.41 tolerated(0.31) benign(0.013) TCGA-38-4625-01 13 32783856 32783856 T A FRY Silent p.V1470V 0.46 TCGA-38-4625-01 13 42869852 42869852 G T AKAP11 Nonsense_Mutation p.E64* 0.30 TCGA-38-4625-01 13 46952048 46952048 G T KIAA0226L 5'UTR 0.29 TCGA-38-4625-01 13 53307452 53307452 G A LECT1 Nonsense_Mutation p.Q86* 0.34 TCGA-38-4625-01 13 53313872 53313872 C A LECT1 5'UTR 0.38 TCGA-38-4625-01 13 86369960 86369960 C G SLITRK6 Missense_Mutation p.Q228H 0.43 tolerated(0.2) benign(0.001) TCGA-38-4625-01 13 99452598 99452598 C G DOCK9 Missense_Mutation p.A1968P 0.30 tolerated(0.36) benign(0.283) TCGA-38-4625-01 13 99461650 99461650 G T DOCK9 Missense_Mutation p.R1775S 0.25 deleterious(0) benign(0.151) TCGA-38-4625-01 14 103986586 103986586 G A CKB Silent p.I280I 0.10 TCGA-38-4625-01 14 106321244 106321244 G C IGHM Missense_Mutation p.L249V 0.05 deleterious(0.01) possibly_damaging(0.859) TCGA-38-4625-01 14 106322151 106322151 G C IGHM Nonsense_Mutation p.S58* 0.16 TCGA-38-4625-01 14 20248811 20248811 G C OR4M1 Silent p.S110S 0.11 TCGA-38-4625-01 14 20389218 20389218 G C OR4K5 Silent p.V151V 0.12 TCGA-38-4625-01 14 20404218 20404218 C A OR4K1 Missense_Mutation p.H131Q 0.14 deleterious(0.02) benign(0.273) TCGA-38-4625-01 14 20711254 20711254 A T OR11H4 Missense_Mutation p.I102F 0.26 deleterious(0) possibly_damaging(0.846) TCGA-38-4625-01 14 22090691 22090691 C G TRAV1-1 Missense_Mutation p.D99E 0.16 deleterious(0) probably_damaging(0.999) TCGA-38-4625-01 14 22466152 22466152 C A TRAV17 Missense_Mutation p.P28T 0.24 tolerated(0.4) benign(0.086) TCGA-38-4625-01 14 23564591 23564591 G C C14orf119 5'UTR 0.10 TCGA-38-4625-01 14 23884924 23884924 C A MYH7 Missense_Mutation p.V1691L 0.15 tolerated(0.44) benign(0.003) TCGA-38-4625-01 14 23889329 23889329 C T MYH7 Missense_Mutation p.E1151K 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-38-4625-01 14 25444047 25444047 C A STXBP6 5'UTR 0.45 TCGA-38-4625-01 14 33684503 33684503 A T NPAS3 Missense_Mutation p.S86C 0.34 deleterious(0.01) possibly_damaging(0.7) TCGA-38-4625-01 14 42360763 42360763 G T LRFN5 Missense_Mutation p.V566F 0.19 tolerated(0.05) possibly_damaging(0.56) TCGA-38-4625-01 14 50713738 50713738 C G L2HGDH 3'UTR 0.28 TCGA-38-4625-01 14 63246455 63246455 C G KCNH5 Silent p.L670L 0.12 TCGA-38-4625-01 14 68222716 68222716 T C ZFYVE26 Silent p.L2245L 0.36 TCGA-38-4625-01 14 75515236 75515236 C T MLH3 Missense_Mutation p.D375N 0.15 tolerated(1) benign(0) TCGA-38-4625-01 14 88792823 88792823 G T KCNK10 5'Flank 0.40 TCGA-38-4625-01 14 90650778 90650778 G A KCNK13 Missense_Mutation p.E220K 0.05 deleterious(0) probably_damaging(1) TCGA-38-4625-01 14 92484063 92484063 T A TRIP11 Missense_Mutation p.D207V 0.27 deleterious(0) possibly_damaging(0.566) TCGA-38-4625-01 15 102291945 102291945 G T DNM1P47 RNA 0.21 TCGA-38-4625-01 15 20642659 20642659 G T HERC2P3 RNA 0.19 TCGA-38-4625-01 15 23890035 23890035 G T MAGEL2 Missense_Mutation p.S349Y 0.37 deleterious(0) probably_damaging(0.997) TCGA-38-4625-01 15 23931360 23931360 G A NDN 3'UTR 0.41 TCGA-38-4625-01 15 23932116 23932116 C A NDN Silent p.P83P 0.52 TCGA-38-4625-01 15 24921181 24921181 G T NPAP1 Missense_Mutation p.R56L 0.42 tolerated(0.49) benign(0.433) TCGA-38-4625-01 15 30020222 30020222 C A TJP1 Missense_Mutation p.K673N 0.36 deleterious(0) possibly_damaging(0.754) TCGA-38-4625-01 15 31320613 31320613 C A TRPM1 Missense_Mutation p.W1089L 0.35 deleterious(0) probably_damaging(0.975) TCGA-38-4625-01 15 35084612 35084612 T A ACTC1 Missense_Mutation p.T205S 0.18 tolerated_low_confidence(0.39) benign(0.009) TCGA-38-4625-01 15 43638088 43638088 A TT ADAL Frame_Shift_Ins p.L154Ffs*18 0.32 TCGA-38-4625-01 15 43820739 43820739 T A MAP1A Missense_Mutation p.D2356E 0.17 possibly_damaging(0.548) TCGA-38-4625-01 15 48444134 48444134 C A MYEF2 Missense_Mutation p.G382W 0.10 deleterious(0) probably_damaging(0.933) TCGA-38-4625-01 15 52664516 52664516 C A MYO5A Silent p.R874R 0.36 TCGA-38-4625-01 15 54592569 54592569 G A UNC13C Missense_Mutation p.M1422I 0.23 deleterious_low_confidence(0) possibly_damaging(0.717) TCGA-38-4625-01 15 54919052 54919052 G T UNC13C Missense_Mutation p.G2129V 0.21 deleterious_low_confidence(0.01) benign(0.401) TCGA-38-4625-01 15 56142862 56142862 C A NEDD4 Missense_Mutation p.G756C 0.44 deleterious(0.03) benign(0.019) TCGA-38-4625-01 15 66727454 66727454 A C MAP2K1 Missense_Mutation p.K57T 0.36 deleterious(0) probably_damaging(0.994) TCGA-38-4625-01 15 74032524 74032524 C A C15orf59 Missense_Mutation p.G206C 0.38 tolerated(0.07) possibly_damaging(0.624) TCGA-38-4625-01 15 77907657 77907657 G A LINGO1 Silent p.L198L 0.36 TCGA-38-4625-01 15 83820030 83820030 C A HDGFRP3 Missense_Mutation p.E181D 0.41 tolerated(0.17) benign(0.001) TCGA-38-4625-01 15 85657227 85657227 G A PDE8A Missense_Mutation p.D437N 0.32 tolerated(0.06) possibly_damaging(0.479) TCGA-38-4625-01 15 86807844 86807844 C T AGBL1 Missense_Mutation p.S435F 0.20 tolerated(0.15) benign(0.004) TCGA-38-4625-01 15 88476242 88476242 C A NTRK3 Splice_Site p.X630_splice 0.47 TCGA-38-4625-01 15 88576096 88576096 G T NTRK3 Missense_Mutation p.P526Q 0.19 deleterious(0.01) probably_damaging(0.936) TCGA-38-4625-01 15 90177050 90177050 C T KIF7 Missense_Mutation p.R820Q 0.27 tolerated(0.1) probably_damaging(0.999) TCGA-38-4625-01 16 2130310 2130310 C T TSC2 Missense_Mutation p.T1181M 0.14 tolerated(0.22) benign(0.016) TCGA-38-4625-01 16 2158369 2158369 C A PKD1 Missense_Mutation p.V2267L 0.29 possibly_damaging(0.546) TCGA-38-4625-01 16 2285496 2285496 G A E4F1 Missense_Mutation p.E760K 0.21 deleterious(0) probably_damaging(0.998) TCGA-38-4625-01 16 22926287 22926287 G C HS3ST2 Missense_Mutation p.E170Q 0.11 deleterious(0.03) possibly_damaging(0.723) TCGA-38-4625-01 16 23695377 23695377 A T PLK1 Missense_Mutation p.S335C 0.12 tolerated(0.08) benign(0.021) TCGA-38-4625-01 16 23768979 23768979 G T CHP2 3'UTR 0.17 TCGA-38-4625-01 16 27375238 27375238 G T IL4R 3'UTR 0.24 TCGA-38-4625-01 16 2854924 2854924 G T PRSS41 RNA 0.56 TCGA-38-4625-01 16 28912103 28912103 C A ATP2A1 Silent p.R656R 0.10 TCGA-38-4625-01 16 29857194 29857194 C G MVP Missense_Mutation p.Q678E 0.11 tolerated(1) possibly_damaging(0.9) TCGA-38-4625-01 16 30129407 30129407 C A MAPK3 Silent p.T207T 0.27 TCGA-38-4625-01 16 30937210 30937210 C T FBXL19 Silent p.P65P 0.30 TCGA-38-4625-01 16 31105880 31105880 G T VKORC1 Silent p.S57S 0.38 TCGA-38-4625-01 16 31332582 31332582 C T ITGAM Silent p.L577L 0.31 TCGA-38-4625-01 16 31485912 31485912 C T TGFB1I1 Missense_Mutation p.P183L 0.23 deleterious(0.04) benign(0.202) TCGA-38-4625-01 16 32893977 32893977 G T RP11-989E6.3 5'Flank 0.23 TCGA-38-4625-01 16 47252779 47252779 C G ITFG1 Missense_Mutation p.A485P 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-38-4625-01 16 48177929 48177929 G T ABCC12 Missense_Mutation p.T56K 0.26 deleterious(0) possibly_damaging(0.821) TCGA-38-4625-01 16 70070441 70070441 C A PDXDC2P RNA 0.40 TCGA-38-4625-01 16 70070442 70070442 C A PDXDC2P RNA 0.39 TCGA-38-4625-01 16 71318668 71318668 C A CMTR2 Nonsense_Mutation p.G386* 0.41 TCGA-38-4625-01 16 816888 816888 G T MSLN Silent p.A467A 0.15 TCGA-38-4625-01 16 87367539 87367539 C A FBXO31 Silent p.V450V 0.32 TCGA-38-4625-01 17 12666814 12666814 G T MYOCD Missense_Mutation p.M938I 0.43 deleterious(0) probably_damaging(0.986) TCGA-38-4625-01 17 13399534 13399534 C T HS3ST3A1 Missense_Mutation p.D401N 0.15 tolerated(0.27) benign(0.003) TCGA-38-4625-01 17 18194199 18194199 C T TOP3A Missense_Mutation p.R475Q 0.38 deleterious(0.01) probably_damaging(0.938) TCGA-38-4625-01 17 25909923 25909923 G A KSR1 Missense_Mutation p.G121S 0.33 tolerated(0.6) possibly_damaging(0.759) TCGA-38-4625-01 17 27069038 27069038 A G NEK8 3'UTR 0.26 TCGA-38-4625-01 17 28506276 28506276 G A NSRP1 Missense_Mutation p.E157K 0.17 tolerated(0.16) benign(0.369) TCGA-38-4625-01 17 33289356 33289356 T C ZNF830 Silent p.D257D 0.32 TCGA-38-4625-01 17 33738843 33738843 G A SLFN12 Silent p.V417V 0.20 TCGA-38-4625-01 17 38926035 38926035 C G KRT26 Missense_Mutation p.E314Q 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-38-4625-01 17 39580153 39580153 C A KRT37 Intron 0.12 TCGA-38-4625-01 17 39580154 39580154 C A KRT37 Intron 0.14 TCGA-38-4625-01 17 41019706 41019706 G C AOC4P RNA 0.17 TCGA-38-4625-01 17 41477680 41477680 G T ARL4D Missense_Mutation p.A194S 0.32 tolerated(0.35) unknown(0) TCGA-38-4625-01 17 44049287 44049287 G T MAPT Missense_Mutation p.A66S 0.33 deleterious(0) possibly_damaging(0.671) TCGA-38-4625-01 17 44248468 44248468 G C KANSL1 Missense_Mutation p.R348G 0.10 deleterious(0) probably_damaging(0.995) TCGA-38-4625-01 17 46608020 46608020 C A HOXB1 Missense_Mutation p.G83W 0.14 deleterious(0) probably_damaging(1) TCGA-38-4625-01 17 47123622 47123622 G T IGF2BP1 Missense_Mutation p.V510L 0.07 deleterious(0) probably_damaging(0.949) TCGA-38-4625-01 17 49353256 49353256 A T UTP18 Missense_Mutation p.E247D 0.13 tolerated(0.13) benign(0.051) TCGA-38-4625-01 17 51901221 51901221 A G KIF2B Missense_Mutation p.N276S 0.17 deleterious(0) probably_damaging(0.999) TCGA-38-4625-01 17 60342471 60342471 G T TBC1D3P2 3'Flank 0.10 TCGA-38-4625-01 17 60351469 60351469 A G TBC1D3P2 RNA 0.15 TCGA-38-4625-01 17 60744814 60744814 G A MRC2 Nonsense_Mutation p.W346* 0.29 TCGA-38-4625-01 17 66982438 66982438 C T ABCA9 Missense_Mutation p.E1359K 0.12 tolerated(0.12) benign(0.009) TCGA-38-4625-01 17 71282454 71282454 G A CDC42EP4 Silent p.G62G 0.17 TCGA-38-4625-01 17 7226812 7226812 C A NEURL4 Missense_Mutation p.W803C 0.46 deleterious(0) probably_damaging(0.993) TCGA-38-4625-01 17 7226813 7226813 C A NEURL4 Missense_Mutation p.W803L 0.47 deleterious(0.03) probably_damaging(0.949) TCGA-38-4625-01 17 73736056 73736056 C T ITGB4 Missense_Mutation p.L784F 0.22 tolerated(0.08) benign(0.109) TCGA-38-4625-01 17 76433798 76433798 G A DNAH17 Silent p.N3980N 0.23 TCGA-38-4625-01 17 7667583 7667583 G A DNAH2 Missense_Mutation p.E1110K 0.16 benign(0.029) TCGA-38-4625-01 17 79225013 79225013 T - SLC38A10 Intron 0.12 TCGA-38-4625-01 17 79246366 79246366 G A SLC38A10 Missense_Mutation p.T325I 0.29 deleterious(0) probably_damaging(1) TCGA-38-4625-01 17 7983194 7983194 G T ALOX12B Missense_Mutation p.P274T 0.21 deleterious(0) probably_damaging(0.986) TCGA-38-4625-01 18 10672837 10672837 G T PIEZO2 Missense_Mutation p.S2619Y 0.33 tolerated(0.14) benign(0.027) TCGA-38-4625-01 18 10696195 10696195 G C PIEZO2 Missense_Mutation p.T2243S 0.18 deleterious(0) benign(0.305) TCGA-38-4625-01 18 28935179 28935179 G T DSG1 Missense_Mutation p.G1007V 0.44 deleterious(0.01) probably_damaging(0.972) TCGA-38-4625-01 18 32431873 32431873 G A DTNA Missense_Mutation p.E418K 0.40 tolerated(0.21) benign(0.327) TCGA-38-4625-01 18 43497741 43497741 G A EPG5 Silent p.L1048L 0.48 TCGA-38-4625-01 18 48591909 48591909 G T SMAD4 Nonsense_Mutation p.G358* 0.49 TCGA-38-4625-01 18 54694412 54694412 G T WDR7 Missense_Mutation p.G1483W 0.71 deleterious(0) probably_damaging(1) TCGA-38-4625-01 18 63489400 63489400 G T CDH7 Missense_Mutation p.G237C 0.45 deleterious(0) probably_damaging(1) TCGA-38-4625-01 18 7007241 7007241 G T LAMA1 Missense_Mutation p.P1386Q 0.27 tolerated(0.17) benign(0.056) TCGA-38-4625-01 18 77107846 77107846 A C ATP9B Missense_Mutation p.H920P 0.41 deleterious(0) probably_damaging(0.988) TCGA-38-4625-01 19 13264219 13264219 G T IER2 Silent p.P73P 0.56 TCGA-38-4625-01 19 1388534 1388534 G T NDUFS7 Missense_Mutation p.G22C 0.18 tolerated_low_confidence(0.06) possibly_damaging(0.503) TCGA-38-4625-01 19 15796003 15796003 G A CYP4F12 Missense_Mutation p.E371K 0.42 deleterious(0.03) benign(0.367) TCGA-38-4625-01 19 17838467 17838467 G T MAP1S Silent p.A758A 0.39 TCGA-38-4625-01 19 19334879 19334879 C G NCAN Missense_Mutation p.F175L 0.35 deleterious(0) probably_damaging(0.992) TCGA-38-4625-01 19 22271585 22271585 C G ZNF257 Missense_Mutation p.Q345E 0.36 deleterious(0.03) benign(0.001) TCGA-38-4625-01 19 22847441 22847441 C A ZNF492 Missense_Mutation p.L324I 0.46 deleterious(0.02) probably_damaging(0.986) TCGA-38-4625-01 19 23329182 23329182 C A ZNF730 Missense_Mutation p.H446N 0.37 deleterious(0) probably_damaging(0.943) TCGA-38-4625-01 19 23927877 23927877 C A ZNF681 Nonsense_Mutation p.G159* 0.39 TCGA-38-4625-01 19 31039771 31039771 G T ZNF536 Missense_Mutation p.G1082V 0.53 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-38-4625-01 19 3638995 3638995 C A PIP5K1C Missense_Mutation p.G603C 0.26 tolerated_low_confidence(0.35) benign(0.001) TCGA-38-4625-01 19 37314698 37314698 G A ZNF790 Intron 0.47 TCGA-38-4625-01 19 375777 375777 G A THEG Missense_Mutation p.P65L 0.30 tolerated(0.42) benign(0.024) TCGA-38-4625-01 19 3979399 3979399 C A EEF2 Silent p.A547A 0.23 TCGA-38-4625-01 19 43586697 43586697 A G PSG2 Missense_Mutation p.C9R 0.26 tolerated(0.36) benign(0.055) TCGA-38-4625-01 19 43773541 43773541 A T PSG9 Missense_Mutation p.W15R 0.27 deleterious(0.05) probably_damaging(0.99) TCGA-38-4625-01 19 48733784 48733785 TG GTA CARD8 Frame_Shift_Ins p.S317Ffs*15 0.40 TCGA-38-4625-01 19 50249744 50249744 G C TSKS Silent p.T325T 0.32 TCGA-38-4625-01 19 51051826 51051826 G C LRRC4B Nonsense_Mutation p.Y90* 0.21 TCGA-38-4625-01 19 51483660 51483660 G T KLK7 Missense_Mutation p.P102H 0.37 deleterious(0.02) probably_damaging(0.986) TCGA-38-4625-01 19 51501051 51501051 C A KLK8 Missense_Mutation p.G240C 0.37 deleterious(0.02) probably_damaging(0.997) TCGA-38-4625-01 19 51581198 51581198 C A KLK14 3'UTR 0.44 TCGA-38-4625-01 19 53085491 53085491 C T ZNF701 Missense_Mutation p.S126L 0.17 tolerated(0.22) probably_damaging(0.99) TCGA-38-4625-01 19 54240145 54240145 G C MIR516B1 RNA 0.35 TCGA-38-4625-01 19 54515405 54515405 G T CACNG6 Missense_Mutation p.G249W 0.26 deleterious(0.02) possibly_damaging(0.874) TCGA-38-4625-01 19 55239105 55239105 C A KIR3DL3 Silent p.A128A 0.42 TCGA-38-4625-01 19 56413553 56413553 C A NLRP13 Silent p.L879L 0.26 TCGA-38-4625-01 19 57642902 57642902 G A USP29 3'UTR 0.38 TCGA-38-4625-01 19 7267399 7267399 C A INSR Silent p.G203G 0.19 TCGA-38-4625-01 19 7516153 7516153 G T ARHGEF18 Splice_Site p.X431_splice 0.14 TCGA-38-4625-01 19 7976183 7976183 C T MAP2K7 Missense_Mutation p.R302W 0.14 deleterious(0) probably_damaging(0.999) TCGA-38-4625-01 19 9033633 9033633 T G MUC16 Missense_Mutation p.T12102P 0.26 possibly_damaging(0.679) TCGA-38-4625-01 19 9046284 9046284 T A MUC16 Missense_Mutation p.S11783C 0.19 possibly_damaging(0.827) TCGA-38-4625-01 19 9077693 9077693 G T MUC16 Silent p.A3251A 0.21 TCGA-38-4625-01 19 9086151 9086151 C A MUC16 Missense_Mutation p.M1888I 0.34 unknown(0) TCGA-38-4625-01 19 9226295 9226295 C T OR7G1 Missense_Mutation p.V49I 0.18 tolerated(0.38) benign(0.022) TCGA-38-4625-01 1 100316544 100316544 G C AGL 5'UTR 0.23 TCGA-38-4625-01 1 100340791 100340791 C G AGL Silent p.L388L 0.22 TCGA-38-4625-01 1 101190386 101190386 G A VCAM1 Missense_Mutation p.V290M 0.21 deleterious(0.03) benign(0.394) TCGA-38-4625-01 1 104297131 104297131 G T AMY1C Nonsense_Mutation p.E297* 0.09 TCGA-38-4625-01 1 108138841 108138841 G T VAV3 Silent p.G781G 0.28 TCGA-38-4625-01 1 109235396 109235396 G C PRPF38B Missense_Mutation p.M61I 0.19 tolerated(0.07) possibly_damaging(0.674) TCGA-38-4625-01 1 109238948 109238948 G A PRPF38B Missense_Mutation p.D183N 0.10 tolerated(0.06) benign(0.32) TCGA-38-4625-01 1 110034140 110034140 G C ATXN7L2 Missense_Mutation p.G652A 0.17 tolerated_low_confidence(1) possibly_damaging(0.472) TCGA-38-4625-01 1 110607491 110607491 G A ALX3 Silent p.P104P 0.27 TCGA-38-4625-01 1 113616016 113616016 G T LRIG2 5'UTR 0.15 TCGA-38-4625-01 1 116206455 116206455 C T VANGL1 Silent p.T126T 0.17 TCGA-38-4625-01 1 117626717 117626717 G T TTF2 Nonsense_Mutation p.E661* 0.18 TCGA-38-4625-01 1 120337200 120337200 G T REG4 3'UTR 0.29 TCGA-38-4625-01 1 12144555 12144555 C A TNFRSF8 Missense_Mutation p.P33H 0.34 deleterious(0) probably_damaging(0.975) TCGA-38-4625-01 1 12144556 12144556 C A TNFRSF8 Silent p.P33P 0.33 TCGA-38-4625-01 1 12267131 12267131 G A TNFRSF1B 3'UTR 0.24 TCGA-38-4625-01 1 12941779 12941779 C A PRAMEF4 Missense_Mutation p.E257D 0.26 tolerated(0.07) benign(0.204) TCGA-38-4625-01 1 13001077 13001077 C G PRAMEF6 Silent p.V202V 0.17 TCGA-38-4625-01 1 150980988 150980988 G A PRUNE 5'UTR 0.14 TCGA-38-4625-01 1 151039792 151039792 G A MLLT11 Missense_Mutation p.G31D 0.14 tolerated(0.06) probably_damaging(1) TCGA-38-4625-01 1 151316173 151316173 C T RFX5 Silent p.K247K 0.38 TCGA-38-4625-01 1 152324370 152324370 G T FLG2 Silent p.P1964P 0.17 TCGA-38-4625-01 1 152770267 152770267 C A LCE1D 5'UTR 0.23 TCGA-38-4625-01 1 153233489 153233489 G A LOR Missense_Mutation p.G22S 0.25 unknown(0) TCGA-38-4625-01 1 153665941 153665941 A G NPR1 3'UTR 0.26 TCGA-38-4625-01 1 154245987 154245987 G A HAX1 Missense_Mutation p.D77N 0.07 tolerated(0.11) possibly_damaging(0.796) TCGA-38-4625-01 1 154293724 154293724 G A AQP10 Silent p.V31V 0.24 TCGA-38-4625-01 1 154558793 154558793 C A ADAR Missense_Mutation p.W1022C 0.28 deleterious(0) probably_damaging(0.999) TCGA-38-4625-01 1 154940998 154940998 G A SHC1 Silent p.L241L 0.26 TCGA-38-4625-01 1 155254545 155254545 G A HCN3 Silent p.E362E 0.31 TCGA-38-4625-01 1 158517680 158517680 G T OR6Y1 Silent p.S72S 0.24 TCGA-38-4625-01 1 159032508 159032508 C A AIM2 Missense_Mutation p.V336F 0.15 deleterious(0) benign(0.36) TCGA-38-4625-01 1 159684363 159684363 C A CRP 5'UTR 0.44 TCGA-38-4625-01 1 160062751 160062751 G A IGSF8 Silent p.A425A 0.22 TCGA-38-4625-01 1 160192443 160192443 C T DCAF8 Missense_Mutation p.V480M 0.07 deleterious(0.01) probably_damaging(0.934) TCGA-38-4625-01 1 16451705 16451705 G A EPHA2 3'UTR 0.22 TCGA-38-4625-01 1 167815034 167815034 C A ADCY10 Missense_Mutation p.R925M 0.32 deleterious(0.02) benign(0.084) TCGA-38-4625-01 1 171061893 171061893 G A FMO3 Missense_Mutation p.E32K 0.26 deleterious(0.01) probably_damaging(0.982) TCGA-38-4625-01 1 171673540 171673540 G C VAMP4 3'UTR 0.27 TCGA-38-4625-01 1 17292345 17292345 C T CROCC Silent p.L1511L 0.34 TCGA-38-4625-01 1 174652687 174652687 G T RABGAP1L Missense_Mutation p.G618W 0.25 deleterious(0) probably_damaging(1) TCGA-38-4625-01 1 175332952 175332952 G T TNR Missense_Mutation p.P867T 0.16 deleterious(0) probably_damaging(0.997) TCGA-38-4625-01 1 176525551 176525551 G C PAPPA2 Missense_Mutation p.K31N 0.26 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-38-4625-01 1 176563697 176563697 A T PAPPA2 Missense_Mutation p.K319N 0.27 deleterious(0) probably_damaging(0.99) TCGA-38-4625-01 1 176563851 176563851 T A PAPPA2 Missense_Mutation p.Y371N 0.26 deleterious(0) probably_damaging(1) TCGA-38-4625-01 1 178425834 178425834 G T RASAL2 Intron 0.23 TCGA-38-4625-01 1 192544966 192544966 C T RGS1 Missense_Mutation p.P15L 0.17 tolerated(0.06) probably_damaging(0.953) TCGA-38-4625-01 1 193219878 193219878 C T CDC73 3'UTR 0.33 TCGA-38-4625-01 1 198691572 198691572 G T PTPRC Nonsense_Mutation p.G563* 0.19 TCGA-38-4625-01 1 200143263 200143263 C T NR5A2 Silent p.L517L 0.25 TCGA-38-4625-01 1 207760745 207760745 C A CR1 Missense_Mutation p.P1849T 0.22 deleterious(0) probably_damaging(0.935) TCGA-38-4625-01 1 207760746 207760746 C A CR1 Missense_Mutation p.P1849Q 0.21 deleterious(0) probably_damaging(0.991) TCGA-38-4625-01 1 211192527 211192527 G - KCNH1 Frame_Shift_Del p.L211Yfs*15 0.21 TCGA-38-4625-01 1 216256822 216256822 G A USH2A Silent p.N1758N 0.25 TCGA-38-4625-01 1 22032301 22032301 G A USP48 Missense_Mutation p.S768L 0.22 tolerated(0.21) benign(0.334) TCGA-38-4625-01 1 228401911 228401911 T G OBSCN Missense_Mutation p.V432G 0.21 benign(0.191) TCGA-38-4625-01 1 228401912 228401912 G T OBSCN Silent p.V432V 0.17 TCGA-38-4625-01 1 228475809 228475809 G A OBSCN Missense_Mutation p.E3716K 0.11 probably_damaging(0.987) TCGA-38-4625-01 1 228646048 228646048 G T HIST3H2BB Missense_Mutation p.R73L 0.28 deleterious_low_confidence(0.01) benign(0.351) TCGA-38-4625-01 1 229773791 229773791 A T URB2 Missense_Mutation p.D1144V 0.21 tolerated(0.13) possibly_damaging(0.603) TCGA-38-4625-01 1 229773793 229773793 A T URB2 Missense_Mutation p.R1145W 0.21 deleterious(0.01) benign(0.145) TCGA-38-4625-01 1 235993715 235993715 C T LYST Translation_Start_Site p.M1? 0.30 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-38-4625-01 1 236645629 236645629 C A EDARADD Missense_Mutation p.P110T 0.23 deleterious(0) probably_damaging(0.999) TCGA-38-4625-01 1 237656366 237656366 G T RYR2 Missense_Mutation p.R647L 0.14 probably_damaging(0.945) TCGA-38-4625-01 1 237777472 237777472 G T RYR2 Nonsense_Mutation p.E1682* 0.29 TCGA-38-4625-01 1 237780736 237780736 G T RYR2 Missense_Mutation p.A1956S 0.24 probably_damaging(0.999) TCGA-38-4625-01 1 241669315 241669315 C A FH Missense_Mutation p.A298S 0.20 tolerated(0.49) benign(0.14) TCGA-38-4625-01 1 245020932 245020932 G A HNRNPU Missense_Mutation p.L528F 0.10 deleterious(0) unknown(0) TCGA-38-4625-01 1 247835530 247835530 C A OR13G1 Missense_Mutation p.A272S 0.25 tolerated(0.55) possibly_damaging(0.61) TCGA-38-4625-01 1 248616110 248616110 G T OR2T2 Missense_Mutation p.E4D 0.13 tolerated(0.16) benign(0.101) TCGA-38-4625-01 1 248789984 248789984 C - OR2T11 Frame_Shift_Del p.G149Afs*13 0.24 TCGA-38-4625-01 1 28906908 28906908 G A TRNAU1AP 3'Flank 0.45 TCGA-38-4625-01 1 34035054 34035054 G T CSMD2 Missense_Mutation p.S2686Y 0.27 tolerated(0.34) possibly_damaging(0.694) TCGA-38-4625-01 1 35223275 35223275 G T GJB5 Missense_Mutation p.R115L 0.31 tolerated(0.09) benign(0.011) TCGA-38-4625-01 1 36553831 36553831 G A TEKT2 3'UTR 0.33 TCGA-38-4625-01 1 39341359 39341359 G A GJA9 Nonsense_Mutation p.Q138* 0.11 TCGA-38-4625-01 1 43773124 43773124 G A TIE1 Missense_Mutation p.G265E 0.18 deleterious(0) probably_damaging(1) TCGA-38-4625-01 1 53715182 53715182 C A LRP8 Missense_Mutation p.G908V 0.37 deleterious_low_confidence(0.01) benign(0.118) TCGA-38-4625-01 1 57480786 57480786 T A DAB1 Missense_Mutation p.K405M 0.10 deleterious(0.02) benign(0.357) TCGA-38-4625-01 1 6206463 6206463 C A CHD5 Silent p.V537V 0.47 TCGA-38-4625-01 1 65332725 65332725 C A JAK1 Missense_Mutation p.A272S 0.14 tolerated(0.5) benign(0.011) TCGA-38-4625-01 1 67263727 67263727 C A INSL5 Missense_Mutation p.C126F 0.10 deleterious(0.04) probably_damaging(1) TCGA-38-4625-01 1 67787288 67787288 C G IL12RB2 Missense_Mutation p.A27G 0.31 deleterious(0.03) benign(0.152) TCGA-38-4625-01 1 68903886 68903886 G T RPE65 Missense_Mutation p.P371H 0.10 deleterious(0) probably_damaging(1) TCGA-38-4625-01 1 70225969 70225969 G C LRRC7 Missense_Mutation p.D28H 0.11 deleterious(0) probably_damaging(0.999) TCGA-38-4625-01 1 7811344 7811344 A G CAMTA1 Missense_Mutation p.Q1592R 0.38 deleterious(0.04) probably_damaging(0.978) TCGA-38-4625-01 1 78399075 78399075 G A NEXN Missense_Mutation p.E388K 0.15 tolerated(0.14) possibly_damaging(0.735) TCGA-38-4625-01 1 86934763 86934763 G T CLCA1 Missense_Mutation p.V37F 0.12 deleterious(0.04) benign(0.19) TCGA-38-4625-01 20 17445902 17445902 T C PCSK2 Intron 0.25 TCGA-38-4625-01 20 21686967 21686967 C A PAX1 Intron 0.14 TCGA-38-4625-01 20 23669590 23669590 C G CST4 Missense_Mutation p.C6S 0.18 tolerated(0.4) benign(0.043) TCGA-38-4625-01 20 34776397 34776397 C G EPB41L1 Missense_Mutation p.F334L 0.13 deleterious(0) probably_damaging(1) TCGA-38-4625-01 20 40709434 40709434 C G PTPRT 3'UTR 0.13 TCGA-38-4625-01 20 40733211 40733211 G T PTPRT Missense_Mutation p.Q1180K 0.24 tolerated(0.09) probably_damaging(0.93) TCGA-38-4625-01 20 41076865 41076865 A T PTPRT Missense_Mutation p.Y519N 0.28 deleterious(0) probably_damaging(0.998) TCGA-38-4625-01 20 41076866 41076866 G T PTPRT Silent p.L518L 0.27 TCGA-38-4625-01 20 41101120 41101120 G T PTPRT Nonsense_Mutation p.Y412* 0.33 TCGA-38-4625-01 20 44806720 44806720 T A CDH22 Missense_Mutation p.T594S 0.27 deleterious(0) probably_damaging(0.996) TCGA-38-4625-01 20 45315857 45315857 T A TP53RK Silent p.P99P 0.28 TCGA-38-4625-01 20 48130834 48130834 C - PTGIS Frame_Shift_Del p.W318Cfs*18 0.26 TCGA-38-4625-01 20 52779269 52779269 G T CYP24A1 Missense_Mutation p.A326D 0.26 deleterious(0) possibly_damaging(0.855) TCGA-38-4625-01 20 55748170 55748170 G C BMP7 Intron 0.35 TCGA-38-4625-01 20 56099141 56099141 G T CTCFL Missense_Mutation p.H41N 0.25 tolerated(0.34) benign(0.093) TCGA-38-4625-01 20 57269554 57269554 C A NPEPL1 Nonsense_Mutation p.S138* 0.27 TCGA-38-4625-01 20 57599325 57599325 C A TUBB1 Nonsense_Mutation p.Y281* 0.26 TCGA-38-4625-01 20 5903918 5903918 G C CHGB Missense_Mutation p.Q376H 0.11 tolerated(0.61) benign(0.004) TCGA-38-4625-01 20 60713265 60713265 C A PSMA7 Missense_Mutation p.D185Y 0.23 deleterious(0.01) benign(0.022) TCGA-38-4625-01 20 61340877 61340877 C A NTSR1 Silent p.G106G 0.29 TCGA-38-4625-01 20 9364988 9364988 C T PLCB4 Missense_Mutation p.L332F 0.27 deleterious(0) probably_damaging(0.999) TCGA-38-4625-01 20 9546888 9546888 G T PAK7 Missense_Mutation p.H378Q 0.28 tolerated(0.19) probably_damaging(0.986) TCGA-38-4625-01 21 10934954 10934954 C A TPTE Missense_Mutation p.R280L 0.20 deleterious(0.04) benign(0.115) TCGA-38-4625-01 21 11039159 11039159 G C BAGE2 RNA 0.10 TCGA-38-4625-01 21 28214865 28214865 G T ADAMTS1 Silent p.A290A 0.43 TCGA-38-4625-01 21 28214866 28214866 G T ADAMTS1 Missense_Mutation p.A290D 0.44 deleterious(0) probably_damaging(0.928) TCGA-38-4625-01 21 32127565 32127565 G T KRTAP21-1 Silent p.S44S 0.05 TCGA-38-4625-01 21 32410539 32410539 G T KRTAP19-8 3'UTR 0.48 TCGA-38-4625-01 21 34635794 34635796 ATA - IFNAR2 In_Frame_Del p.I513del 0.11 TCGA-38-4625-01 21 37775118 37775118 C T CHAF1B Silent p.F242F 0.42 TCGA-38-4625-01 21 41667981 41667981 C A DSCAM Splice_Site p.X728_splice 0.36 TCGA-38-4625-01 21 42861483 42861483 C G TMPRSS2 Silent p.G129G 0.39 TCGA-38-4625-01 21 44838254 44838254 C A SIK1 Missense_Mutation p.G544W 0.37 deleterious(0) probably_damaging(1) TCGA-38-4625-01 22 17489065 17489065 G T GAB4 5'UTR 0.33 TCGA-38-4625-01 22 22724453 22724453 C A IGLV7-46 Silent p.%3D 0.40 TCGA-38-4625-01 22 22843071 22843071 G A ZNF280B Missense_Mutation p.P218L 0.09 tolerated(0.15) benign(0.05) TCGA-38-4625-01 22 23265035 23265035 C A IGLC7 Missense_Mutation p.H91N 0.32 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-38-4625-01 22 26892178 26892178 G A TFIP11 Silent p.I570I 0.12 TCGA-38-4625-01 22 31597539 31597539 G T RNF185 Missense_Mutation p.G140V 0.44 deleterious(0) probably_damaging(0.999) TCGA-38-4625-01 22 42377700 42377700 C A SEPT3 Missense_Mutation p.P21H 0.45 deleterious(0.01) benign(0.339) TCGA-38-4625-01 22 46684477 46684477 C T TTC38 Silent p.D358D 0.24 TCGA-38-4625-01 22 50656678 50656678 A G TUBGCP6 Missense_Mutation p.V1703A 0.41 tolerated(0.25) possibly_damaging(0.801) TCGA-38-4625-01 22 50943086 50943086 C A LMF2 Missense_Mutation p.R503L 0.33 deleterious(0) probably_damaging(1) TCGA-38-4625-01 2 109086647 109086647 G A GCC2 Missense_Mutation p.E288K 0.23 tolerated(0.05) benign(0.396) TCGA-38-4625-01 2 113832767 113832767 G A IL1F10 Silent p.E95E 0.15 TCGA-38-4625-01 2 116447469 116447469 C T DPP10 Missense_Mutation p.A187V 0.04 deleterious(0) possibly_damaging(0.649) TCGA-38-4625-01 2 120069237 120069237 G A C2orf76 Silent p.L89L 0.06 TCGA-38-4625-01 2 128608189 128608189 C T POLR2D Missense_Mutation p.E109K 0.07 deleterious(0) benign(0.336) TCGA-38-4625-01 2 128870688 128870688 C T UGGT1 Silent p.H184H 0.09 TCGA-38-4625-01 2 130877729 130877729 C A POTEF Missense_Mutation p.W120C 0.17 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-38-4625-01 2 133174633 133174633 C T GPR39 Silent p.L6L 0.18 TCGA-38-4625-01 2 133427484 133427484 C T LYPD1 Missense_Mutation p.A8T 0.11 tolerated_low_confidence(0.62) possibly_damaging(0.763) TCGA-38-4625-01 2 135076304 135076304 C T MGAT5 Silent p.L189L 0.20 TCGA-38-4625-01 2 135744679 135744679 G T MAP3K19 Missense_Mutation p.P588H 0.21 deleterious(0.02) possibly_damaging(0.906) TCGA-38-4625-01 2 136633878 136633878 C A MCM6 Missense_Mutation p.D20Y 0.30 deleterious(0) probably_damaging(1) TCGA-38-4625-01 2 141665495 141665495 G T LRP1B Nonsense_Mutation p.C1157* 0.12 TCGA-38-4625-01 2 144714835 144714835 C A GTDC1 Missense_Mutation p.D353Y 0.16 deleterious(0) probably_damaging(0.981) TCGA-38-4625-01 2 149542268 149542268 G C EPC2 Missense_Mutation p.M683I 0.09 tolerated(0.28) benign(0.018) TCGA-38-4625-01 2 152317652 152317652 C G RIF1 Missense_Mutation p.L1026V 0.12 tolerated(0.22) benign(0.031) TCGA-38-4625-01 2 159196804 159196804 G T CCDC148 Missense_Mutation p.Q146K 0.17 tolerated(0.23) possibly_damaging(0.486) TCGA-38-4625-01 2 162279909 162279909 T A TBR1 Missense_Mutation p.L407Q 0.16 deleterious(0) benign(0.125) TCGA-38-4625-01 2 165952085 165952085 G T SCN3A Nonsense_Mutation p.S1456* 0.15 TCGA-38-4625-01 2 168099835 168099835 G A XIRP2 Missense_Mutation p.E645K 0.25 probably_damaging(0.944) TCGA-38-4625-01 2 1691403 1691403 C A PXDN Splice_Site p.X139_splice 0.48 TCGA-38-4625-01 2 171700608 171700608 A T GAD1 Missense_Mutation p.K231M 0.23 deleterious(0) benign(0.221) TCGA-38-4625-01 2 175939289 175939289 T C ATF2 3'UTR 0.14 TCGA-38-4625-01 2 179428592 179428592 C T TTN Missense_Mutation p.E27423K 0.16 TCGA-38-4625-01 2 179435906 179435906 C A TTN Missense_Mutation p.A24985S 0.15 TCGA-38-4625-01 2 17998016 17998016 G T MSGN1 Silent p.G77G 0.14 TCGA-38-4625-01 2 182794337 182794337 G T SSFA2 3'UTR 0.14 TCGA-38-4625-01 2 185803511 185803511 C A ZNF804A Missense_Mutation p.Q1130K 0.17 deleterious(0.03) benign(0.023) TCGA-38-4625-01 2 187506203 187506203 A G ITGAV Silent p.L349L 0.15 TCGA-38-4625-01 2 198949706 198949706 C T PLCL1 Missense_Mutation p.L489F 0.13 deleterious(0) probably_damaging(0.991) TCGA-38-4625-01 2 202074065 202074065 C T CASP10 Nonsense_Mutation p.Q399* 0.26 TCGA-38-4625-01 2 207172542 207172542 G T ZDBF2 Missense_Mutation p.W1097L 0.18 tolerated(0.05) benign(0.307) TCGA-38-4625-01 2 210558138 210558138 T A MAP2 Missense_Mutation p.I415K 0.17 deleterious_low_confidence(0.01) benign(0.014) TCGA-38-4625-01 2 21234718 21234718 C G APOB Missense_Mutation p.E1674D 0.18 benign(0.007) TCGA-38-4625-01 2 215301400 215301400 C A VWC2L Missense_Mutation p.H146Q 0.18 tolerated(0.27) possibly_damaging(0.792) TCGA-38-4625-01 2 217340026 217340026 C T SMARCAL1 Missense_Mutation p.S760L 0.18 tolerated(0.06) benign(0.033) TCGA-38-4625-01 2 219029412 219029412 G A CXCR1 Missense_Mutation p.R175C 0.19 deleterious(0) benign(0.428) TCGA-38-4625-01 2 220147942 220147942 G A DNAJB2 Missense_Mutation p.R178H 0.06 deleterious(0) benign(0.256) TCGA-38-4625-01 2 225695309 225695309 T A DOCK10 Silent p.A995A 0.22 TCGA-38-4625-01 2 231076245 231076245 G - SP110 Frame_Shift_Del p.Q231Kfs*2 0.13 TCGA-38-4625-01 2 231331929 231331929 G T SP100 Missense_Mutation p.K430N 0.15 tolerated(0.29) possibly_damaging(0.607) TCGA-38-4625-01 2 234676909 234676909 T A UGT1A10 Missense_Mutation p.H373Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-38-4625-01 2 239234561 239234561 G A TRAF3IP1 Missense_Mutation p.E102K 0.28 deleterious(0) possibly_damaging(0.745) TCGA-38-4625-01 2 26502035 26502035 G T HADHB Missense_Mutation p.E221D 0.13 deleterious(0) probably_damaging(0.989) TCGA-38-4625-01 2 272282 272282 C T ACP1 Missense_Mutation p.H70Y 0.33 tolerated(0.05) benign(0.06) TCGA-38-4625-01 2 32626377 32626377 G A BIRC6 Missense_Mutation p.G394E 0.16 probably_damaging(0.999) TCGA-38-4625-01 2 33500061 33500061 C A LTBP1 Missense_Mutation p.L925I 0.25 tolerated(0.24) possibly_damaging(0.893) TCGA-38-4625-01 2 44428764 44428764 G C PPM1B Missense_Mutation p.K142N 0.30 tolerated(0.41) benign(0.003) TCGA-38-4625-01 2 44547563 44547563 C T SLC3A1 Missense_Mutation p.P615S 0.32 tolerated(0.08) benign(0.403) TCGA-38-4625-01 2 64778576 64778576 G A AFTPH Splice_Site 0.23 TCGA-38-4625-01 2 64778577 64778577 G T AFTPH Intron 0.23 TCGA-38-4625-01 2 71043138 71043138 G C CLEC4F Missense_Mutation p.Q459E 0.13 deleterious(0) possibly_damaging(0.659) TCGA-38-4625-01 2 71376433 71376433 A T MPHOSPH10 Missense_Mutation p.K582N 0.34 deleterious(0) probably_damaging(0.999) TCGA-38-4625-01 2 71650950 71650950 G A ZNF638 Missense_Mutation p.E1436K 0.06 deleterious(0) possibly_damaging(0.81) TCGA-38-4625-01 2 71801371 71801371 C A DYSF Missense_Mutation p.S1091Y 0.12 deleterious(0) possibly_damaging(0.905) TCGA-38-4625-01 2 74041303 74041303 G T C2orf78 Missense_Mutation p.G266V 0.13 deleterious(0.03) probably_damaging(0.988) TCGA-38-4625-01 2 80816440 80816440 G T CTNNA2 Silent p.A673A 0.27 TCGA-38-4625-01 2 85875930 85875930 G C USP39 Nonstop_Mutation p.*566Sext*71 0.27 TCGA-38-4625-01 2 88422681 88422681 A T FABP1 Intron 0.28 TCGA-38-4625-01 2 90122050 90122050 G T IGKV1D-17 Missense_Mutation p.G90W 0.19 deleterious(0) possibly_damaging(0.856) TCGA-38-4625-01 2 90122051 90122051 G T IGKV1D-17 Missense_Mutation p.G90V 0.19 deleterious(0) probably_damaging(0.977) TCGA-38-4625-01 2 90212229 90212229 C A IGKV3D-11 Nonsense_Mutation p.Y107* 0.08 TCGA-38-4625-01 2 90229254 90229254 A T IGKV1D-42 Missense_Mutation p.Q25L 0.13 tolerated(0.1) probably_damaging(0.999) TCGA-38-4625-01 2 90260163 90260163 C A IGKV1D-8 Missense_Mutation p.S89Y 0.18 deleterious(0.03) benign(0.324) TCGA-38-4625-01 3 101520220 101520220 G T NXPE3 Missense_Mutation p.D79Y 0.33 tolerated(0.06) possibly_damaging(0.575) TCGA-38-4625-01 3 108407548 108407548 C A DZIP3 Missense_Mutation p.Q1127K 0.20 tolerated(0.13) benign(0.007) TCGA-38-4625-01 3 111849175 111849175 G T GCSAM Intron 0.27 TCGA-38-4625-01 3 111950283 111950283 A G SLC9C1 Silent p.C499C 0.25 TCGA-38-4625-01 3 112326064 112326064 C A CCDC80 Missense_Mutation p.G822V 0.16 deleterious(0.03) probably_damaging(1) TCGA-38-4625-01 3 120449566 120449566 C A RABL3 Missense_Mutation p.V39L 0.28 deleterious(0.01) possibly_damaging(0.487) TCGA-38-4625-01 3 123444857 123444857 G T MYLK Missense_Mutation p.Q529K 0.24 deleterious(0.03) benign(0.156) TCGA-38-4625-01 3 123699363 123699363 C A ROPN1 5'UTR 0.32 TCGA-38-4625-01 3 123813744 123813744 G A KALRN Silent p.L20L 0.11 TCGA-38-4625-01 3 123987731 123987731 G T KALRN Missense_Mutation p.V198L 0.39 tolerated(0.61) benign(0.032) TCGA-38-4625-01 3 128984617 128984617 C A COPG1 Missense_Mutation p.H484N 0.14 tolerated(1) benign(0.001) TCGA-38-4625-01 3 12949849 12949849 C A IQSEC1 Missense_Mutation p.G933W 0.26 deleterious(0) probably_damaging(1) TCGA-38-4625-01 3 134920428 134920428 G A EPHB1 Missense_Mutation p.R748K 0.17 deleterious(0) benign(0.42) TCGA-38-4625-01 3 135720271 135720271 C T PPP2R3A 5'UTR 0.19 TCGA-38-4625-01 3 13679441 13679441 C A FBLN2 3'UTR 0.18 TCGA-38-4625-01 3 140282979 140282979 C T CLSTN2 Missense_Mutation p.P887S 0.25 deleterious(0.01) probably_damaging(1) TCGA-38-4625-01 3 140285095 140285095 G T CLSTN2 Nonstop_Mutation p.*956Yext*14 0.40 TCGA-38-4625-01 3 141497180 141497180 G T GRK7 Missense_Mutation p.Q18H 0.30 deleterious(0.01) benign(0.016) TCGA-38-4625-01 3 147114214 147114214 G T ZIC4 Missense_Mutation p.S88Y 0.14 deleterious(0.01) possibly_damaging(0.548) TCGA-38-4625-01 3 150840700 150840700 C A MED12L Missense_Mutation p.A112E 0.18 deleterious(0.02) possibly_damaging(0.684) TCGA-38-4625-01 3 154146868 154146868 G A GPR149 Silent p.P179P 0.17 TCGA-38-4625-01 3 15468019 15468019 C A METTL6 5'UTR 0.21 TCGA-38-4625-01 3 155655474 155655474 G T GMPS Missense_Mutation p.W692L 0.37 deleterious(0) probably_damaging(1) TCGA-38-4625-01 3 160395109 160395109 A T ARL14 5'UTR 0.12 TCGA-38-4625-01 3 164748524 164748524 T A SI Silent p.T956T 0.24 TCGA-38-4625-01 3 16475526 16475526 G A RFTN1 Missense_Mutation p.S55L 0.15 deleterious(0) probably_damaging(0.999) TCGA-38-4625-01 3 167745577 167745577 C A GOLIM4 Missense_Mutation p.G521V 0.28 tolerated(0.18) benign(0.025) TCGA-38-4625-01 3 167745622 167745622 T C GOLIM4 Missense_Mutation p.Y506C 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-38-4625-01 3 171426594 171426594 C G PLD1 Missense_Mutation p.A366P 0.19 deleterious(0) probably_damaging(0.996) TCGA-38-4625-01 3 180322691 180322691 G C TTC14 Missense_Mutation p.M251I 0.28 tolerated(0.05) benign(0.04) TCGA-38-4625-01 3 184298540 184298540 G T EPHB3 Missense_Mutation p.W804C 0.36 deleterious(0) probably_damaging(1) TCGA-38-4625-01 3 194407680 194407680 G T FAM43A Missense_Mutation p.C42F 0.21 deleterious(0) probably_damaging(0.996) TCGA-38-4625-01 3 21478546 21478546 C A ZNF385D Nonsense_Mutation p.E197* 0.32 TCGA-38-4625-01 3 36779850 36779850 C A DCLK3 Nonsense_Mutation p.E101* 0.25 TCGA-38-4625-01 3 37107382 37107382 G A LRRFIP2 Missense_Mutation p.H540Y 0.14 deleterious(0.02) possibly_damaging(0.609) TCGA-38-4625-01 3 38591730 38591730 C G SCN5A 3'UTR 0.20 TCGA-38-4625-01 3 38835299 38835299 C A SCN10A Missense_Mutation p.G68V 0.23 deleterious(0) probably_damaging(1) TCGA-38-4625-01 3 38951598 38951598 G T SCN11A Silent p.R354R 0.28 TCGA-38-4625-01 3 40192632 40192632 C A MYRIP Nonsense_Mutation p.Y142* 0.15 TCGA-38-4625-01 3 44611518 44611518 C T ZKSCAN7 Missense_Mutation p.P306S 0.20 tolerated(0.31) benign(0.01) TCGA-38-4625-01 3 46904801 46904801 G - MYL3 Frame_Shift_Del p.P27Lfs*43 0.33 TCGA-38-4625-01 3 48630049 48630049 G A COL7A1 Silent p.L310L 0.18 TCGA-38-4625-01 3 51978185 51978185 C A PARP3 Silent p.L95L 0.31 TCGA-38-4625-01 3 52536690 52536690 G T STAB1 Missense_Mutation p.G177V 0.23 deleterious(0) probably_damaging(1) TCGA-38-4625-01 3 52731871 52731873 CTC - GLT8D1 In_Frame_Del p.E65del 0.18 TCGA-38-4625-01 3 58154384 58154384 A T FLNB Silent p.T2503T 0.23 TCGA-38-4625-01 3 58368428 58368428 G T PXK Splice_Site p.X130_splice 0.16 TCGA-38-4625-01 3 78763638 78763638 C A ROBO1 Missense_Mutation p.R318S 0.17 tolerated(0.48) probably_damaging(0.989) TCGA-38-4625-01 3 88041057 88041057 T A HTR1F 3'UTR 0.23 TCGA-38-4625-01 3 95374332 95374332 G T MTHFD2P1 RNA 0.26 TCGA-38-4625-01 3 97887954 97887954 C A OR5H15 Silent p.T137T 0.10 TCGA-38-4625-01 4 10076965 10076965 C A WDR1 3'UTR 0.30 TCGA-38-4625-01 4 11400898 11400898 C T HS3ST1 Silent p.S244S 0.12 TCGA-38-4625-01 4 115997446 115997446 G T NDST4 Missense_Mutation p.S249R 0.45 tolerated(0.52) benign(0.001) TCGA-38-4625-01 4 123167293 123167309 TACGATCTTTTTAGTTA - KIAA1109 Splice_Site p.X1680_splice 0.39 TCGA-38-4625-01 4 146806894 146806894 C A ZNF827 Silent p.A561A 0.48 TCGA-38-4625-01 4 147438205 147438205 T A SLC10A7 Silent p.L56L 0.42 TCGA-38-4625-01 4 153803943 153803943 C A ARFIP1 Silent p.A234A 0.50 TCGA-38-4625-01 4 155665772 155665772 C A LRAT Silent p.I98I 0.09 TCGA-38-4625-01 4 156841131 156841131 G T TDO2 Nonsense_Mutation p.E404* 0.09 TCGA-38-4625-01 4 164394038 164394038 C A TKTL2 Missense_Mutation p.Q283H 0.42 tolerated(0.1) benign(0.012) TCGA-38-4625-01 4 164534479 164534479 G T MARCH1 Missense_Mutation p.Q77K 0.49 tolerated(0.29) benign(0.022) TCGA-38-4625-01 4 170634343 170634343 C G CLCN3 Missense_Mutation p.L755V 0.13 tolerated(0.29) probably_damaging(0.979) TCGA-38-4625-01 4 175564774 175564774 C G GLRA3 3'UTR 0.14 TCGA-38-4625-01 4 189061773 189061773 G T TRIML1 Missense_Mutation p.C167F 0.37 tolerated(0.16) probably_damaging(0.997) TCGA-38-4625-01 4 189064958 189064958 G C TRIML1 Intron 0.43 TCGA-38-4625-01 4 47428037 47428037 G T GABRB1 3'UTR 0.30 TCGA-38-4625-01 4 55133523 55133523 C T PDGFRA Missense_Mutation p.T276M 0.27 tolerated(0.24) benign(0.125) TCGA-38-4625-01 4 70599131 70599131 C A SULT1B1 Missense_Mutation p.E199D 0.31 deleterious(0) benign(0.094) TCGA-38-4625-01 4 85701425 85701425 C G WDFY3 Missense_Mutation p.V1401L 0.33 deleterious(0) possibly_damaging(0.77) TCGA-38-4625-01 4 88767740 88767740 G T MEPE 3'UTR 0.38 TCGA-38-4625-01 4 9982270 9982270 G C SLC2A9 Missense_Mutation p.I209M 0.24 deleterious(0) possibly_damaging(0.633) TCGA-38-4625-01 5 118824886 118824886 G T HSD17B4 Splice_Site p.X233_splice 0.17 TCGA-38-4625-01 5 121488479 121488479 A C ZNF474 Missense_Mutation p.K265T 0.17 deleterious(0) probably_damaging(0.999) TCGA-38-4625-01 5 1221988 1221988 C T SLC6A19 Missense_Mutation p.T625I 0.24 deleterious(0.02) benign(0.006) TCGA-38-4625-01 5 122950203 122950203 A C CSNK1G3 3'UTR 0.19 TCGA-38-4625-01 5 131544999 131544999 C G P4HA2 Silent p.G245G 0.13 TCGA-38-4625-01 5 138661340 138661340 A G MATR3 Missense_Mutation p.N787S 0.18 tolerated(0.07) benign(0.098) TCGA-38-4625-01 5 140230312 140230312 G C PCDHA9 Silent p.A744A 0.17 TCGA-38-4625-01 5 140248772 140248772 C A PCDHA11 Missense_Mutation p.S28R 0.19 tolerated_low_confidence(0.06) benign(0.135) TCGA-38-4625-01 5 140250061 140250061 A T PCDHA11 Missense_Mutation p.E458V 0.18 tolerated_low_confidence(0.19) benign(0.044) TCGA-38-4625-01 5 140559862 140559862 C A PCDHB8 Missense_Mutation p.N749K 0.14 deleterious_low_confidence(0.01) benign(0.007) TCGA-38-4625-01 5 140580418 140580418 A T PCDHB11 Silent p.P357P 0.16 TCGA-38-4625-01 5 140594856 140594856 G T PCDHB13 Missense_Mutation p.Q387H 0.24 deleterious_low_confidence(0.01) benign(0.01) TCGA-38-4625-01 5 140720932 140720932 C A PCDHGA2 Silent p.L798L 0.17 TCGA-38-4625-01 5 140730944 140730944 G T PCDHGB1 Missense_Mutation p.G373W 0.15 deleterious(0) probably_damaging(0.999) TCGA-38-4625-01 5 140740261 140740261 G T PCDHGB2 Missense_Mutation p.D187Y 0.10 deleterious(0) probably_damaging(0.992) TCGA-38-4625-01 5 140764549 140764549 G T PCDHGA7 Missense_Mutation p.V695L 0.09 deleterious_low_confidence(0) possibly_damaging(0.696) TCGA-38-4625-01 5 141059692 141059692 C A ARAP3 Missense_Mutation p.G121V 0.16 tolerated(0.55) benign(0.021) TCGA-38-4625-01 5 14369489 14369489 A T TRIO Missense_Mutation p.S1025C 0.07 probably_damaging(0.926) TCGA-38-4625-01 5 146070760 146070760 C T PPP2R2B Silent p.R129R 0.23 TCGA-38-4625-01 5 149206292 149206292 C - PPARGC1B Frame_Shift_Del p.P104Lfs*102 0.18 TCGA-38-4625-01 5 156381592 156381592 T A TIMD4 Silent p.S78S 0.15 TCGA-38-4625-01 5 156589540 156589540 C T FAM71B Missense_Mutation p.G579D 0.18 tolerated(0.73) benign(0.004) TCGA-38-4625-01 5 168135053 168135053 C T SLIT3 Silent p.P924P 0.09 TCGA-38-4625-01 5 168180939 168180939 T G SLIT3 Missense_Mutation p.M587L 0.22 tolerated(1) benign(0.002) TCGA-38-4625-01 5 19473730 19473730 C A CDH18 Missense_Mutation p.D660Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-38-4625-01 5 36986345 36986345 G T NIPBL Missense_Mutation p.E1021D 0.13 tolerated_low_confidence(0.27) benign(0.002) TCGA-38-4625-01 5 43446488 43446488 G A C5orf28 Missense_Mutation p.R162C 0.10 deleterious(0) probably_damaging(1) TCGA-38-4625-01 5 6668412 6668412 G C SRD5A1 3'UTR 0.14 TCGA-38-4625-01 5 70800487 70800487 G C BDP1 Missense_Mutation p.E761Q 0.17 tolerated(0.19) benign(0.045) TCGA-38-4625-01 5 71490888 71490888 C A MAP1B Missense_Mutation p.T569K 0.17 benign(0.184) TCGA-38-4625-01 5 78697767 78697767 C T HOMER1 Silent p.Q213Q 0.17 TCGA-38-4625-01 5 82816655 82816655 C A VCAN Missense_Mutation p.P844T 0.20 tolerated(0.11) possibly_damaging(0.835) TCGA-38-4625-01 5 82832691 82832691 G T VCAN Intron 0.40 TCGA-38-4625-01 5 88100465 88100465 T G MEF2C Missense_Mutation p.T70P 0.24 deleterious(0) probably_damaging(0.998) TCGA-38-4625-01 5 9066560 9066560 C G SEMA5A Missense_Mutation p.D758H 0.17 deleterious(0) probably_damaging(1) TCGA-38-4625-01 6 101075586 101075586 T G ASCC3 Missense_Mutation p.M1508L 0.23 tolerated(0.1) benign(0.001) TCGA-38-4625-01 6 110763979 110763979 C A SLC22A16 Splice_Site p.X218_splice 0.38 TCGA-38-4625-01 6 112493878 112493878 G T LAMA4 Missense_Mutation p.L496I 0.10 tolerated(0.26) benign(0.199) TCGA-38-4625-01 6 116757588 116757588 C T DSE Missense_Mutation p.L653F 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-38-4625-01 6 119252870 119252870 T C MCM9 Missense_Mutation p.T7A 0.40 tolerated(0.95) benign(0.004) TCGA-38-4625-01 6 123376978 123376978 A C CLVS2 Missense_Mutation p.S235R 0.19 tolerated(0.08) benign(0.068) TCGA-38-4625-01 6 128403663 128403663 T A PTPRK Missense_Mutation p.T566S 0.38 deleterious(0.03) benign(0.138) TCGA-38-4625-01 6 132029840 132029840 G T CTAGE9 Missense_Mutation p.P773H 0.34 deleterious(0) probably_damaging(0.985) TCGA-38-4625-01 6 132860409 132860409 C A TAAR9 Missense_Mutation p.S327R 0.08 deleterious(0.01) possibly_damaging(0.907) TCGA-38-4625-01 6 132910326 132910326 G T TAAR5 Nonsense_Mutation p.S167* 0.07 TCGA-38-4625-01 6 132967082 132967082 C A TAAR1 Missense_Mutation p.D21Y 0.36 tolerated(1) benign(0.142) TCGA-38-4625-01 6 136599348 136599348 C A BCLAF1 Missense_Mutation p.R224I 0.11 deleterious(0) possibly_damaging(0.506) TCGA-38-4625-01 6 136913701 136913701 C A MAP3K5 Missense_Mutation p.S977I 0.13 deleterious(0.03) probably_damaging(0.996) TCGA-38-4625-01 6 143074281 143074281 C A HIVEP2 Missense_Mutation p.S2435I 0.10 deleterious_low_confidence(0.03) benign(0.058) TCGA-38-4625-01 6 152651069 152651069 C A SYNE1 Silent p.L4917L 0.19 TCGA-38-4625-01 6 152722272 152722272 C A SYNE1 Splice_Site p.X2343_splice 0.17 TCGA-38-4625-01 6 155451515 155451515 G T TIAM2 Missense_Mutation p.W386C 0.16 deleterious(0.01) benign(0.142) TCGA-38-4625-01 6 155532366 155532366 A T TIAM2 Silent p.T1031T 0.12 TCGA-38-4625-01 6 167708042 167708042 C A UNC93A Missense_Mutation p.A42E 0.21 deleterious(0) possibly_damaging(0.657) TCGA-38-4625-01 6 169626293 169626293 C A THBS2 Silent p.L840L 0.18 TCGA-38-4625-01 6 24403396 24403396 G C MRS2 Missense_Mutation p.R41P 0.26 tolerated_low_confidence(0.28) possibly_damaging(0.504) TCGA-38-4625-01 6 27835210 27835210 G T HIST1H1B Missense_Mutation p.A33D 0.08 deleterious(0.04) unknown(0) TCGA-38-4625-01 6 29974692 29974692 C A ZNRD1-AS1 Intron 0.47 TCGA-38-4625-01 6 31713049 31713049 C T MSH5 Missense_Mutation p.S240L 0.10 deleterious(0.02) possibly_damaging(0.856) TCGA-38-4625-01 6 32170317 32170317 G T NOTCH4 Missense_Mutation p.H1097Q 0.64 tolerated(0.4) probably_damaging(0.997) TCGA-38-4625-01 6 33144976 33144976 G A COL11A2 Silent p.I580I 0.39 TCGA-38-4625-01 6 34003554 34003554 G T GRM4 Missense_Mutation p.P778H 0.47 deleterious(0.01) probably_damaging(1) TCGA-38-4625-01 6 35773736 35773736 G T LHFPL5 Missense_Mutation p.A97S 0.45 deleterious(0.04) possibly_damaging(0.669) TCGA-38-4625-01 6 35773737 35773737 C T LHFPL5 Missense_Mutation p.A97V 0.45 tolerated(0.09) possibly_damaging(0.755) TCGA-38-4625-01 6 36455032 36455032 C G KCTD20 3'UTR 0.10 TCGA-38-4625-01 6 41556419 41556419 A G FOXP4 Missense_Mutation p.T339A 0.37 deleterious(0.02) possibly_damaging(0.905) TCGA-38-4625-01 6 41888678 41888678 C G MED20 Intron 0.46 TCGA-38-4625-01 6 43127622 43127622 G T PTK7 Missense_Mutation p.W998C 0.42 deleterious(0) probably_damaging(1) TCGA-38-4625-01 6 51612663 51612663 C A PKHD1 Nonsense_Mutation p.E3251* 0.42 TCGA-38-4625-01 6 52054023 52054023 G T IL17A Missense_Mutation p.R134L 0.43 deleterious(0) possibly_damaging(0.676) TCGA-38-4625-01 6 52103574 52103574 T A IL17F Missense_Mutation p.M70L 0.16 tolerated(0.68) benign(0) TCGA-38-4625-01 6 52103575 52103575 G T IL17F Silent p.S69S 0.16 TCGA-38-4625-01 6 6305703 6305703 G T F13A1 Missense_Mutation p.T67N 0.31 deleterious(0) probably_damaging(1) TCGA-38-4625-01 6 69646450 69646450 G A BAI3 Missense_Mutation p.C303Y 0.10 deleterious(0) probably_damaging(0.998) TCGA-38-4625-01 6 70647993 70647993 G T COL19A1 Splice_Site p.X312_splice 0.11 TCGA-38-4625-01 6 71298475 71298475 G T C6orf57 3'UTR 0.58 TCGA-38-4625-01 6 7229930 7229930 C T RREB1 Missense_Mutation p.A533V 0.16 deleterious(0) probably_damaging(0.973) TCGA-38-4625-01 6 7585772 7585772 C A DSP Silent p.R2759R 0.14 TCGA-38-4625-01 6 75875472 75875472 C A COL12A1 Missense_Mutation p.V912F 0.13 benign(0.007) TCGA-38-4625-01 6 80741183 80741183 G T TTK Splice_Site p.X508_splice 0.12 TCGA-38-4625-01 6 83845498 83845498 G T DOPEY1 Missense_Mutation p.V1011L 0.40 deleterious(0.04) benign(0.196) TCGA-38-4625-01 6 97424052 97424052 G T KLHL32 Missense_Mutation p.R68L 0.38 deleterious(0) possibly_damaging(0.746) TCGA-38-4625-01 6 99857222 99857222 T A PNISR Splice_Site p.X168_splice 0.40 TCGA-38-4625-01 7 100460369 100460369 A G SLC12A9 Missense_Mutation p.Q593R 0.35 tolerated(0.32) benign(0.003) TCGA-38-4625-01 7 100465727 100465727 C T TRIP6 Intron 0.46 TCGA-38-4625-01 7 100696350 100696350 G T MUC17 Missense_Mutation p.G4396V 0.30 benign(0.184) TCGA-38-4625-01 7 102760290 102760290 C G NAPEPLD Missense_Mutation p.E225D 0.16 tolerated(0.17) benign(0.013) TCGA-38-4625-01 7 107569637 107569637 C G LAMB1 Missense_Mutation p.D1587H 0.14 deleterious(0.01) possibly_damaging(0.548) TCGA-38-4625-01 7 111398842 111398842 C A DOCK4 Missense_Mutation p.L1380F 0.16 tolerated(0.08) possibly_damaging(0.566) TCGA-38-4625-01 7 114268856 114268856 A G FOXP2 Intron 0.39 TCGA-38-4625-01 7 119915472 119915472 G C KCND2 Missense_Mutation p.M262I 0.11 deleterious(0) probably_damaging(0.999) TCGA-38-4625-01 7 120496858 120496858 T G TSPAN12 5'UTR 0.11 TCGA-38-4625-01 7 122635158 122635158 C A TAS2R16 Missense_Mutation p.Q177H 0.33 tolerated(0.35) benign(0.006) TCGA-38-4625-01 7 127950789 127950789 G T RBM28 3'UTR 0.15 TCGA-38-4625-01 7 133932305 133932305 T A LRGUK Intron 0.11 TCGA-38-4625-01 7 136848928 136848928 C A hsa-mir-490 Intron 0.11 TCGA-38-4625-01 7 141537763 141537763 G T PRSS37 Silent p.A109A 0.38 TCGA-38-4625-01 7 142104227 142104227 G C TRBV6-9 Missense_Mutation p.P80A 0.37 tolerated(0.16) benign(0.071) TCGA-38-4625-01 7 142104318 142104318 T C TRBV6-9 Silent p.G49G 0.34 TCGA-38-4625-01 7 142627249 142627249 T C TRPV5 Missense_Mutation p.I85V 0.07 tolerated(1) benign(0.014) TCGA-38-4625-01 7 143771977 143771977 G T OR2A25 Missense_Mutation p.C222F 0.13 tolerated(0.72) possibly_damaging(0.515) TCGA-38-4625-01 7 150696413 150696413 G A NOS3 Silent p.T364T 0.10 TCGA-38-4625-01 7 154429579 154429579 C A DPP6 Missense_Mutation p.H226N 0.16 tolerated(0.25) benign(0.003) TCGA-38-4625-01 7 154598762 154598762 T A DPP6 Missense_Mutation p.C536S 0.34 deleterious(0.02) probably_damaging(1) TCGA-38-4625-01 7 21521652 21521652 G T SP4 Missense_Mutation p.G673V 0.34 deleterious(0) probably_damaging(1) TCGA-38-4625-01 7 21603895 21603895 C A DNAH11 Silent p.R358R 0.31 TCGA-38-4625-01 7 23313759 23313759 C T GPNMB Silent p.L545L 0.31 TCGA-38-4625-01 7 25266430 25266430 C T NPVF Silent p.V118V 0.13 TCGA-38-4625-01 7 27181683 27181683 C A HOXA5 Missense_Mutation p.G195V 0.41 deleterious(0) probably_damaging(0.997) TCGA-38-4625-01 7 27183101 27183101 G T HOXA5 Silent p.S42S 0.19 TCGA-38-4625-01 7 27183102 27183102 G T HOXA5 Missense_Mutation p.S42Y 0.20 deleterious(0) possibly_damaging(0.896) TCGA-38-4625-01 7 33217115 33217115 G T BBS9 Silent p.G118G 0.07 TCGA-38-4625-01 7 33423310 33423310 G C BBS9 Missense_Mutation p.D608H 0.22 deleterious(0.02) probably_damaging(0.973) TCGA-38-4625-01 7 37951860 37951860 C T SFRP4 Missense_Mutation p.V218M 0.18 deleterious(0) probably_damaging(0.999) TCGA-38-4625-01 7 45699649 45699649 A G ADCY1 Missense_Mutation p.H439R 0.33 deleterious(0) probably_damaging(0.999) TCGA-38-4625-01 7 56174054 56174054 C G CHCHD2 Intron 0.14 TCGA-38-4625-01 7 57194386 57194386 G T ZNF479 Missense_Mutation p.L27M 0.27 deleterious(0.04) probably_damaging(0.929) TCGA-38-4625-01 7 72727232 72727232 G A TRIM50 Silent p.G383G 0.60 TCGA-38-4625-01 7 7412815 7412815 C T COL28A1 Missense_Mutation p.D908N 0.19 deleterious(0.02) probably_damaging(0.954) TCGA-38-4625-01 7 7571510 7571510 G C COL28A1 Silent p.V50V 0.09 TCGA-38-4625-01 7 77885848 77885848 C G MAGI2 Missense_Mutation p.A487P 0.10 tolerated(0.07) probably_damaging(0.977) TCGA-38-4625-01 7 80108232 80108232 C T GNAT3 Missense_Mutation p.R129Q 0.38 tolerated(0.15) benign(0.021) TCGA-38-4625-01 7 888109 888109 C T SUN1 Intron 0.25 TCGA-38-4625-01 7 92734591 92734591 C T SAMD9 Missense_Mutation p.D274N 0.08 tolerated(0.09) benign(0.052) TCGA-38-4625-01 7 96651649 96651649 C A DLX5 Missense_Mutation p.V130L 0.09 deleterious(0.01) benign(0.007) TCGA-38-4625-01 7 96651650 96651650 C A DLX5 Missense_Mutation p.M129I 0.09 tolerated(0.32) benign(0.001) TCGA-38-4625-01 7 99802969 99802969 C T STAG3 Missense_Mutation p.P1067L 0.42 tolerated(0.05) benign(0.001) TCGA-38-4625-01 8 104388028 104388028 C T CTHRC1 Silent p.A71A 0.18 TCGA-38-4625-01 8 10473996 10473996 C A RP1L1 Missense_Mutation p.E237D 0.20 possibly_damaging(0.504) TCGA-38-4625-01 8 10622935 10622935 C A PINX1 Missense_Mutation p.K321N 0.21 deleterious_low_confidence(0) benign(0) TCGA-38-4625-01 8 106815565 106815565 T A ZFPM2 Silent p.A1085A 0.09 TCGA-38-4625-01 8 113349007 113349007 C A CSMD3 Missense_Mutation p.G2298V 0.12 deleterious(0) probably_damaging(0.995) TCGA-38-4625-01 8 113871477 113871477 T G CSMD3 Missense_Mutation p.N551T 0.09 tolerated(0.14) possibly_damaging(0.673) TCGA-38-4625-01 8 11412873 11412873 C G BLK Missense_Mutation p.L218V 0.14 tolerated(0.71) benign(0.001) TCGA-38-4625-01 8 116632061 116632061 C A TRPS1 Missense_Mutation p.L88F 0.50 deleterious_low_confidence(0) possibly_damaging(0.51) TCGA-38-4625-01 8 120608213 120608213 C A ENPP2 Silent p.P334P 0.47 TCGA-38-4625-01 8 120638941 120638941 C A ENPP2 Missense_Mutation p.W52C 0.08 deleterious(0.01) possibly_damaging(0.736) TCGA-38-4625-01 8 121210169 121210169 G A COL14A1 Missense_Mutation p.G238S 0.10 deleterious(0) probably_damaging(1) TCGA-38-4625-01 8 133650261 133650261 C A LRRC6 Nonsense_Mutation p.E117* 0.48 TCGA-38-4625-01 8 133947998 133947998 C A TG Intron 0.15 TCGA-38-4625-01 8 139160791 139160791 G A FAM135B Silent p.H1140H 0.20 TCGA-38-4625-01 8 141294041 141294041 T A TRAPPC9 Silent p.T785T 0.57 TCGA-38-4625-01 8 143856771 143856771 G A LYNX1 Intron 0.07 TCGA-38-4625-01 8 143960508 143960508 C A CYP11B1 Missense_Mutation p.S112I 0.34 tolerated(0.41) benign(0.001) TCGA-38-4625-01 8 143960555 143960555 G A CYP11B1 Silent p.D96D 0.45 TCGA-38-4625-01 8 144332657 144332657 G C ZFP41 3'UTR 0.16 TCGA-38-4625-01 8 144803920 144803920 A T MAPK15 Splice_Site p.X444_splice 0.10 TCGA-38-4625-01 8 145095304 145095304 C T SPATC1 Missense_Mutation p.R236C 0.25 deleterious(0) possibly_damaging(0.855) TCGA-38-4625-01 8 3038656 3038656 C G CSMD1 Missense_Mutation p.A1901P 0.28 probably_damaging(0.974) TCGA-38-4625-01 8 30701942 30701942 G T TEX15 Missense_Mutation p.T1531K 0.25 deleterious(0.02) possibly_damaging(0.663) TCGA-38-4625-01 8 3216805 3216805 C A CSMD1 Missense_Mutation p.G1058V 0.22 probably_damaging(1) TCGA-38-4625-01 8 41530361 41530361 C A ANK1 Missense_Mutation p.R1577L 0.58 deleterious(0.02) benign(0.313) TCGA-38-4625-01 8 41550651 41550651 C A ANK1 Missense_Mutation p.A1242S 0.49 deleterious(0.01) probably_damaging(0.984) TCGA-38-4625-01 8 49641660 49641660 C A EFCAB1 Missense_Mutation p.A173S 0.11 tolerated(0.36) benign(0.029) TCGA-38-4625-01 8 49987876 49987876 C A C8orf22 3'UTR 0.08 TCGA-38-4625-01 8 52258433 52258433 G T PXDNL Missense_Mutation p.P1326T 0.04 tolerated(0.15) benign(0.15) TCGA-38-4625-01 8 53126806 53126806 C T ST18 Silent p.E4E 0.44 TCGA-38-4625-01 8 54866724 54866724 G A RGS20 Missense_Mutation p.E278K 0.50 deleterious(0.01) possibly_damaging(0.844) TCGA-38-4625-01 8 69445253 69445253 A T C8orf34 Missense_Mutation p.Q325L 0.40 deleterious(0.01) possibly_damaging(0.755) TCGA-38-4625-01 8 89209476 89209476 G A MMP16 Silent p.R64R 0.45 TCGA-38-4625-01 8 98288650 98288650 C A TSPYL5 3'UTR 0.46 TCGA-38-4625-01 9 103338820 103338820 G T TMEFF1 Nonsense_Mutation p.G361* 0.10 TCGA-38-4625-01 9 116968563 116968563 C T COL27A1 Missense_Mutation p.P752L 0.13 unknown(0) TCGA-38-4625-01 9 117020842 117020842 C A COL27A1 Missense_Mutation p.P1055T 0.31 unknown(0) TCGA-38-4625-01 9 117185751 117185751 C T DFNB31 Missense_Mutation p.R490H 0.13 tolerated(0.12) benign(0.004) TCGA-38-4625-01 9 117810677 117810677 G T TNC Missense_Mutation p.P1572T 0.18 tolerated(0.09) benign(0.12) TCGA-38-4625-01 9 119976664 119976664 C A ASTN2 Nonsense_Mutation p.E330* 0.14 TCGA-38-4625-01 9 121929324 121929324 T A BRINP1 3'UTR 0.18 TCGA-38-4625-01 9 121929679 121929679 C A BRINP1 Missense_Mutation p.V657L 0.18 tolerated(0.33) benign(0.001) TCGA-38-4625-01 9 124751595 124751595 T C TTLL11 Missense_Mutation p.K473R 0.19 tolerated(0.08) benign(0.142) TCGA-38-4625-01 9 125281954 125281954 T A OR1J4 Missense_Mutation p.C179S 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-38-4625-01 9 130985090 130985090 G T DNM1 Nonsense_Mutation p.E383* 0.13 TCGA-38-4625-01 9 133780732 133780732 C T FIBCD1 Missense_Mutation p.E339K 0.16 deleterious(0.01) benign(0.015) TCGA-38-4625-01 9 134319603 134319603 C G PRRC2B Missense_Mutation p.F167L 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-38-4625-01 9 134360104 134360104 G T PRRC2B Missense_Mutation p.R1831L 0.23 deleterious(0) probably_damaging(0.999) TCGA-38-4625-01 9 138376528 138376528 G T PPP1R26 Missense_Mutation p.G58W 0.25 deleterious(0.01) possibly_damaging(0.899) TCGA-38-4625-01 9 139299578 139299578 C A SDCCAG3 Missense_Mutation p.V324F 0.21 deleterious(0) probably_damaging(0.946) TCGA-38-4625-01 9 140001223 140001223 G T MAN1B1 Missense_Mutation p.V510L 0.10 deleterious(0.03) possibly_damaging(0.518) TCGA-38-4625-01 9 17135167 17135167 G C CNTLN Missense_Mutation p.R35P 0.33 tolerated_low_confidence(0.13) benign(0.007) TCGA-38-4625-01 9 18681848 18681848 G C ADAMTSL1 Silent p.V460V 0.15 TCGA-38-4625-01 9 20944668 20944668 G C FOCAD Missense_Mutation p.M1150I 0.08 deleterious(0.01) benign(0.214) TCGA-38-4625-01 9 21166379 21166379 G A IFNA21 Missense_Mutation p.S78F 0.28 tolerated(0.1) benign(0.013) TCGA-38-4625-01 9 21971107 21971107 T A CDKN2A Missense_Mutation p.D84V 0.36 deleterious(0) probably_damaging(1) TCGA-38-4625-01 9 23692846 23692846 C A ELAVL2 Missense_Mutation p.L263F 0.24 tolerated(0.12) benign(0.022) TCGA-38-4625-01 9 27561471 27561471 C A C9orf72 Intron 0.26 TCGA-38-4625-01 9 286497 286497 G C DOCK8 Missense_Mutation p.E65Q 0.18 deleterious(0) possibly_damaging(0.886) TCGA-38-4625-01 9 33370040 33370040 A T NFX1 3'UTR 0.35 TCGA-38-4625-01 9 340166 340166 A G DOCK8 Silent p.L508L 0.14 TCGA-38-4625-01 9 34623960 34623960 C A ARID3C Missense_Mutation p.G159V 0.31 deleterious(0) probably_damaging(1) TCGA-38-4625-01 9 35061054 35061054 G A VCP Silent p.A439A 0.12 TCGA-38-4625-01 9 43627280 43627280 G T SPATA31A6 Silent p.A469A 0.26 TCGA-38-4625-01 9 43627756 43627756 G C SPATA31A6 Missense_Mutation p.Q311E 0.31 tolerated(0.17) benign(0.28) TCGA-38-4625-01 9 6486881 6486881 G T UHRF2 Missense_Mutation p.G485W 0.19 deleterious(0) probably_damaging(1) TCGA-38-4625-01 9 6554779 6554779 C A GLDC Silent p.V735V 0.30 TCGA-38-4625-01 9 71532569 71532569 G T PIP5K1B Missense_Mutation p.D293Y 0.20 deleterious(0.01) possibly_damaging(0.452) TCGA-38-4625-01 9 73151445 73151445 G T TRPM3 Silent p.P1516P 0.19 TCGA-38-4625-01 9 8465465 8465465 C A PTPRD Splice_Site p.X1238_splice 0.10 TCGA-38-4625-01 9 8486068 8486068 C T PTPRD Missense_Mutation p.V917I 0.30 tolerated(0.28) benign(0) TCGA-38-4625-01 9 91653014 91653014 C A SHC3 Missense_Mutation p.G517V 0.18 deleterious(0) probably_damaging(1) TCGA-38-4625-01 9 94486620 94486620 G A ROR2 Missense_Mutation p.A719V 0.17 tolerated(0.05) benign(0.128) TCGA-38-4625-01 9 95285068 95285068 C T ECM2 Silent p.R27R 0.18 TCGA-38-4625-01 X 105280957 105280957 A T SERPINA7 Missense_Mutation p.H31Q 0.32 tolerated(0.33) benign(0.296) TCGA-38-4625-01 X 107084577 107084577 C T MID2 Nonsense_Mutation p.Q228* 0.14 TCGA-38-4625-01 X 107802372 107802372 C T COL4A5 Missense_Mutation p.R74W 0.18 unknown(0) TCGA-38-4625-01 X 111097033 111097033 G T TRPC5 Missense_Mutation p.T401N 0.32 tolerated(0.05) benign(0.196) TCGA-38-4625-01 X 115590106 115590106 C T SLC6A14 Silent p.S638S 0.35 TCGA-38-4625-01 X 117532434 117532434 G C WDR44 Splice_Site p.X425_splice 0.36 TCGA-38-4625-01 X 122747510 122747510 C A THOC2 Missense_Mutation p.R1500L 0.32 deleterious(0.03) possibly_damaging(0.796) TCGA-38-4625-01 X 131261870 131261870 C T FRMD7 Translation_Start_Site p.M1? 0.38 deleterious(0.02) benign(0.001) TCGA-38-4625-01 X 134993770 134993770 G T SAGE1 Nonsense_Mutation p.E727* 0.31 TCGA-38-4625-01 X 142605295 142605295 C A SPANXN3 5'UTR 0.34 TCGA-38-4625-01 X 142716612 142716612 G T SLITRK4 Missense_Mutation p.S771R 0.34 deleterious(0.04) possibly_damaging(0.518) TCGA-38-4625-01 X 148664739 148664739 C T MAGEA9B Missense_Mutation p.G33S 0.13 tolerated(0.14) benign(0.017) TCGA-38-4625-01 X 150869017 150869017 G C PRRG3 Missense_Mutation p.V70L 0.35 tolerated(0.19) possibly_damaging(0.634) TCGA-38-4625-01 X 153590122 153590122 C A FLNA Missense_Mutation p.D954Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-38-4625-01 X 18234842 18234842 T C BEND2 Missense_Mutation p.I13V 0.33 tolerated_low_confidence(1) benign(0) TCGA-38-4625-01 X 18276282 18276282 C A SCML2 Silent p.P385P 0.37 TCGA-38-4625-01 X 30254106 30254106 C G MAGEB3 Missense_Mutation p.T22S 0.21 tolerated(0.23) benign(0.016) TCGA-38-4625-01 X 30269287 30269287 T G MAGEB1 Missense_Mutation p.V226G 0.35 deleterious(0.02) benign(0.033) TCGA-38-4625-01 X 3240858 3240858 T A MXRA5 Silent p.T956T 0.32 TCGA-38-4625-01 X 34149849 34149849 G T FAM47A Missense_Mutation p.P183T 0.36 tolerated(0.3) probably_damaging(0.994) TCGA-38-4625-01 X 45013320 45013320 C T CXorf36 Missense_Mutation p.D266N 0.13 deleterious(0.04) probably_damaging(0.95) TCGA-38-4625-01 X 50052963 50052963 G T CCNB3 Missense_Mutation p.M598I 0.23 tolerated(0.45) benign(0.004) TCGA-38-4625-01 X 50134575 50134575 C G DGKK Splice_Site 0.21 TCGA-38-4625-01 X 50350458 50350458 C T SHROOM4 Silent p.E1228E 0.31 TCGA-38-4625-01 X 51150411 51150411 C A CXorf67 Silent p.P181P 0.62 TCGA-38-4625-01 X 53280025 53280025 C A IQSEC2 Missense_Mutation p.C578F 0.59 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-38-4625-01 X 78010479 78010479 A C LPAR4 Missense_Mutation p.K38T 0.20 deleterious(0.01) probably_damaging(0.984) TCGA-38-4625-01 X 85950086 85950086 C A DACH2 Missense_Mutation p.Q279K 0.27 tolerated(0.05) possibly_damaging(0.571) TCGA-38-4625-01 X 86068172 86068172 G T DACH2 Nonsense_Mutation p.E477* 0.38 TCGA-38-4626-01 10 100995383 100995383 G A HPSE2 Silent p.T59T 0.07 TCGA-38-4626-01 10 105198508 105198508 A - PDCD11 Frame_Shift_Del p.Q1325Sfs*3 0.11 TCGA-38-4626-01 10 116203832 116203832 C A ABLIM1 Missense_Mutation p.R630M 0.05 deleterious(0) benign(0.058) TCGA-38-4626-01 10 118355742 118355742 C A PNLIPRP1 Missense_Mutation p.P161H 0.04 deleterious(0.01) possibly_damaging(0.566) TCGA-38-4626-01 10 119043973 119043973 C A PDZD8 Silent p.L757L 0.18 TCGA-38-4626-01 10 124922239 124922239 C G BUB3 Missense_Mutation p.T289S 0.03 tolerated(1) benign(0.001) TCGA-38-4626-01 10 126523082 126523082 G T FAM175B Missense_Mutation p.A264S 0.22 tolerated(0.11) benign(0.065) TCGA-38-4626-01 10 134059441 134059441 T A STK32C Missense_Mutation p.Q94L 0.24 tolerated(0.16) benign(0.105) TCGA-38-4626-01 10 23481584 23481584 T A PTF1A Missense_Mutation p.L42Q 0.09 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-38-4626-01 10 27048010 27048010 T A ABI1 Silent p.P353P 0.04 TCGA-38-4626-01 10 43016213 43016213 T A ZNF37BP RNA 0.09 TCGA-38-4626-01 10 48389044 48389044 C G RBP3 Missense_Mutation p.V612L 0.07 tolerated(0.31) benign(0.07) TCGA-38-4626-01 10 5567336 5567336 C A CALML3 Missense_Mutation p.D96E 0.14 deleterious_low_confidence(0.04) possibly_damaging(0.454) TCGA-38-4626-01 10 55996679 55996679 G T PCDH15 Missense_Mutation p.P297T 0.07 deleterious(0.04) possibly_damaging(0.833) TCGA-38-4626-01 10 62632019 62632019 C A RHOBTB1 Missense_Mutation p.W615C 0.08 deleterious(0.01) benign(0.159) TCGA-38-4626-01 10 69565369 69565369 T C DNAJC12 Silent p.S158S 0.08 TCGA-38-4626-01 10 72614534 72614534 G C SGPL1 Missense_Mutation p.E111Q 0.07 tolerated(0.49) benign(0.036) TCGA-38-4626-01 10 96099536 96099536 G T NOC3L Nonsense_Mutation p.S641* 0.05 TCGA-38-4626-01 11 111636081 111636081 A G PPP2R1B Missense_Mutation p.S48P 0.07 tolerated(0.08) benign(0.006) TCGA-38-4626-01 11 117302317 117302317 C A DSCAML1 Silent p.V1829V 0.10 TCGA-38-4626-01 11 119027327 119027327 G T ABCG4 Silent p.L288L 0.13 TCGA-38-4626-01 11 126110730 126110730 G T FAM118B Missense_Mutation p.V44L 0.09 tolerated(0.67) probably_damaging(0.99) TCGA-38-4626-01 11 132306643 132306643 G A OPCML Missense_Mutation p.T232I 0.06 tolerated(0.18) benign(0.158) TCGA-38-4626-01 11 18424404 18424404 G T LDHA Missense_Mutation p.V175L 0.04 deleterious(0.01) probably_damaging(0.97) TCGA-38-4626-01 11 2979700 2979700 C A NAP1L4 Missense_Mutation p.R274L 0.08 deleterious(0.01) probably_damaging(1) TCGA-38-4626-01 11 36484285 36484285 G T PRR5L Nonstop_Mutation p.*369Lext*25 0.07 TCGA-38-4626-01 11 45671882 45671882 G T CHST1 Missense_Mutation p.R198S 0.15 tolerated(0.19) benign(0.206) TCGA-38-4626-01 11 4842727 4842727 C A OR51F2 Missense_Mutation p.Q38K 0.06 deleterious(0.01) benign(0.004) TCGA-38-4626-01 11 49805625 49805625 G T RP11-707M1.1 Splice_Site 0.10 TCGA-38-4626-01 11 5020793 5020793 C A OR51L1 Missense_Mutation p.A194D 0.06 deleterious(0.03) probably_damaging(0.992) TCGA-38-4626-01 11 5020889 5020889 C A OR51L1 Missense_Mutation p.T226N 0.11 deleterious(0.01) benign(0.291) TCGA-38-4626-01 11 55037993 55037993 G T TRIM48 3'UTR 0.10 TCGA-38-4626-01 11 55579402 55579402 G T OR5L1 Missense_Mutation p.V154L 0.11 tolerated(0.17) benign(0.084) TCGA-38-4626-01 11 55579854 55579854 G C OR5L1 Silent p.V304V 0.05 TCGA-38-4626-01 11 55659052 55659052 C A TRIM51 Missense_Mutation p.P435T 0.06 tolerated(0.48) benign(0.119) TCGA-38-4626-01 11 55890175 55890175 T C OR8H3 Silent p.T109T 0.04 TCGA-38-4626-01 11 6261622 6261622 G T CNGA4 Missense_Mutation p.A200S 0.07 tolerated(0.99) benign(0.055) TCGA-38-4626-01 11 72297215 72297215 C A PDE2A Nonsense_Mutation p.E361* 0.09 TCGA-38-4626-01 11 8008847 8008847 T C EIF3F 5'UTR 0.06 TCGA-38-4626-01 11 84245668 84245668 G A DLG2 Missense_Mutation p.S155F 0.09 deleterious(0.02) probably_damaging(0.989) TCGA-38-4626-01 12 10149523 10149523 G T CLEC1B Missense_Mutation p.N120K 0.11 deleterious(0) probably_damaging(0.999) TCGA-38-4626-01 12 130648340 130648340 G T FZD10 Missense_Mutation p.A285S 0.06 tolerated(0.11) probably_damaging(0.981) TCGA-38-4626-01 12 18237551 18237551 C A RERGL Missense_Mutation p.G79W 0.09 deleterious(0) probably_damaging(0.999) TCGA-38-4626-01 12 21918603 21918603 C A KCNJ8 3'UTR 0.06 TCGA-38-4626-01 12 30879010 30879010 C A CAPRIN2 Missense_Mutation p.V599L 0.09 tolerated(0.18) benign(0.002) TCGA-38-4626-01 12 32447000 32447000 C A BICD1 Silent p.R167R 0.09 TCGA-38-4626-01 12 4662313 4662313 G T RAD51AP1 Missense_Mutation p.V258L 0.12 deleterious(0.02) benign(0.008) TCGA-38-4626-01 12 6078534 6078535 - G VWF Frame_Shift_Ins p.E2525Gfs*8 0.12 TCGA-38-4626-01 12 77449706 77449706 C A E2F7 Missense_Mutation p.D100Y 0.06 deleterious(0) probably_damaging(1) TCGA-38-4626-01 12 85450741 85450741 A T LRRIQ1 Missense_Mutation p.S724C 0.04 deleterious(0.01) possibly_damaging(0.784) TCGA-38-4626-01 12 8610547 8610547 G C CLEC6A Missense_Mutation p.A29P 0.12 tolerated(0.22) possibly_damaging(0.462) TCGA-38-4626-01 12 94641809 94641809 A T PLXNC1 Missense_Mutation p.Y840F 0.04 deleterious(0) probably_damaging(0.999) TCGA-38-4626-01 12 97114182 97114182 G T C12orf55 Splice_Site p.X2269_splice 0.09 TCGA-38-4626-01 13 75936627 75936627 C A TBC1D4 Silent p.L205L 0.11 TCGA-38-4626-01 13 79190730 79190730 G C RNF219 Missense_Mutation p.P389R 0.09 deleterious(0) possibly_damaging(0.611) TCGA-38-4626-01 14 105412404 105412404 G T AHNAK2 Missense_Mutation p.D3128E 0.07 benign(0.103) TCGA-38-4626-01 14 106757757 106757757 G T IGHV2-26 Missense_Mutation p.L84M 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-38-4626-01 14 20215964 20215964 C A OR4Q3 Silent p.A126A 0.04 TCGA-38-4626-01 14 20612538 20612538 T A OR4N5 Missense_Mutation p.L215Q 0.15 deleterious(0) probably_damaging(1) TCGA-38-4626-01 14 22315231 22315231 C G TRAV8-2 Missense_Mutation p.Q57E 0.04 deleterious(0) probably_damaging(0.913) TCGA-38-4626-01 14 28734072 28734072 G T BNIP3P1 RNA 0.08 TCGA-38-4626-01 14 63416780 63416780 T C KCNH5 Intron 0.09 TCGA-38-4626-01 15 101717776 101717776 T G CHSY1 Silent p.V742V 0.05 TCGA-38-4626-01 15 23811793 23811793 C T MKRN3 Silent p.A288A 0.11 TCGA-38-4626-01 15 25334042 25334042 C G SNORD116-20 RNA 0.05 TCGA-38-4626-01 15 30024963 30024963 C A TJP1 Missense_Mutation p.R598L 0.07 deleterious(0) probably_damaging(0.997) TCGA-38-4626-01 15 31294304 31294304 G T TRPM1 Silent p.V1550V 0.07 TCGA-38-4626-01 15 33926871 33926871 C A RYR3 Silent p.R1038R 0.06 TCGA-38-4626-01 15 93496623 93496623 A T CHD2 Silent p.L513L 0.05 TCGA-38-4626-01 16 27492447 27492447 C T GTF3C1 Silent p.R1383R 0.05 TCGA-38-4626-01 16 33020847 33020847 C A IGHV3OR16-8 Silent p.G85G 0.10 TCGA-38-4626-01 16 33647419 33647419 C T RP11-812E19.9 Missense_Mutation p.G61R 0.04 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-38-4626-01 16 71482488 71482488 C A ZNF23 Missense_Mutation p.E480D 0.07 tolerated(0.06) possibly_damaging(0.844) TCGA-38-4626-01 16 89967042 89967042 G T TCF25 Splice_Site p.X408_splice 0.06 TCGA-38-4626-01 17 1579293 1579293 C A PRPF8 Missense_Mutation p.A870S 0.10 deleterious(0.05) possibly_damaging(0.45) TCGA-38-4626-01 17 16326965 16326965 T C TRPV2 Missense_Mutation p.Y270H 0.09 deleterious(0) probably_damaging(0.999) TCGA-38-4626-01 17 18397699 18397699 G A LGALS9C 3'UTR 0.13 TCGA-38-4626-01 17 33288403 33288403 T C CCT6B Missense_Mutation p.I4V 0.16 tolerated(0.73) benign(0.002) TCGA-38-4626-01 17 38416822 38416822 G T WIPF2 Missense_Mutation p.E33D 0.06 tolerated(0.18) benign(0.068) TCGA-38-4626-01 17 40914767 40914768 CA T RAMP2 Frame_Shift_Del p.P142Lfs*8 0.09 TCGA-38-4626-01 17 44249162 44249162 C A KANSL1 Missense_Mutation p.Q116H 0.04 tolerated(0.12) possibly_damaging(0.785) TCGA-38-4626-01 17 45752095 45752095 G C KPNB1 Missense_Mutation p.G620A 0.06 tolerated(0.15) benign(0.014) TCGA-38-4626-01 17 61958049 61958049 A C GH2 Missense_Mutation p.F180C 0.06 tolerated_low_confidence(0.05) benign(0) TCGA-38-4626-01 17 63822325 63822325 G - CEP112 Intron 0.11 TCGA-38-4626-01 17 68128403 68128403 G T KCNJ16 Missense_Mutation p.V59F 0.05 deleterious(0.03) possibly_damaging(0.802) TCGA-38-4626-01 18 14851650 14851650 A T ANKRD30B Missense_Mutation p.K1117M 0.07 deleterious(0) probably_damaging(0.993) TCGA-38-4626-01 18 28737519 28737519 G T DSC1 Missense_Mutation p.L56I 0.09 deleterious(0.02) benign(0.403) TCGA-38-4626-01 18 5428374 5428374 G T EPB41L3 Missense_Mutation p.P335T 0.05 deleterious(0) probably_damaging(1) TCGA-38-4626-01 18 59777144 59777144 C G PIGN Silent p.L499L 0.07 TCGA-38-4626-01 18 61264592 61264592 C A SERPINB13 Missense_Mutation p.P391T 0.05 deleterious(0) probably_damaging(1) TCGA-38-4626-01 18 61306540 61306540 T A SERPINB4 Missense_Mutation p.Y216F 0.04 tolerated(0.21) benign(0.053) TCGA-38-4626-01 19 10157824 10157824 T A C3P1 RNA 0.07 TCGA-38-4626-01 19 14512216 14512216 G A CD97 Missense_Mutation p.D306N 0.10 deleterious(0.04) probably_damaging(0.992) TCGA-38-4626-01 19 22940448 22940448 G C ZNF99 Missense_Mutation p.H755D 0.08 deleterious(0) possibly_damaging(0.848) TCGA-38-4626-01 19 43414968 43414968 G T PSG6 Missense_Mutation p.P157H 0.06 deleterious(0) probably_damaging(0.996) TCGA-38-4626-01 19 53207840 53207840 C T ZNF611 3'UTR 0.11 TCGA-38-4626-01 19 54299180 54299180 C T NLRP12 Missense_Mutation p.G1011R 0.12 deleterious(0.04) unknown(0) TCGA-38-4626-01 19 9058299 9058299 G A MUC16 Missense_Mutation p.T9716M 0.11 unknown(0) TCGA-38-4626-01 19 9073838 9073838 G C MUC16 Missense_Mutation p.N4536K 0.05 unknown(0) TCGA-38-4626-01 19 9213200 9213200 G T OR7G2 Silent p.T261T 0.05 TCGA-38-4626-01 1 119469162 119469162 G A TBX15 Silent p.D58D 0.06 TCGA-38-4626-01 1 12089847 12089847 G T MIIP Silent p.R247R 0.09 TCGA-38-4626-01 1 12837707 12837707 C A PRAMEF12 Missense_Mutation p.L473M 0.10 tolerated(0.38) probably_damaging(0.986) TCGA-38-4626-01 1 13448266 13448266 C A PRAMEF13 Silent p.G403G 0.05 TCGA-38-4626-01 1 143767862 143767862 G T PPIAL4G 5'UTR 0.09 TCGA-38-4626-01 1 145474697 145474697 G T ANKRD34A Missense_Mutation p.G457W 0.12 deleterious(0) probably_damaging(0.963) TCGA-38-4626-01 1 150129601 150129601 A C PLEKHO1 Missense_Mutation p.Y149S 0.09 tolerated(0.4) benign(0.034) TCGA-38-4626-01 1 152278647 152278647 C A FLG Missense_Mutation p.E2905D 0.03 benign(0) TCGA-38-4626-01 1 152484167 152484167 G - LCE5A Frame_Shift_Del p.G53Vfs*17 0.18 TCGA-38-4626-01 1 152748887 152748887 C A LCE1F Missense_Mutation p.P14T 0.09 deleterious_low_confidence(0) unknown(0) TCGA-38-4626-01 1 153800615 153800615 C A GATAD2B Missense_Mutation p.S70I 0.05 deleterious(0.02) benign(0.009) TCGA-38-4626-01 1 154112395 154112395 G A NUP210L Silent p.P200P 0.05 TCGA-38-4626-01 1 154296832 154296832 A T AQP10 Missense_Mutation p.Q261L 0.10 tolerated(0.43) benign(0.009) TCGA-38-4626-01 1 156883518 156883518 C A PEAR1 Missense_Mutation p.S893R 0.18 tolerated(0.16) benign(0.221) TCGA-38-4626-01 1 157556006 157556006 T G FCRL4 Missense_Mutation p.N363H 0.09 deleterious(0) probably_damaging(0.998) TCGA-38-4626-01 1 158299700 158299700 G T CD1B Silent p.T183T 0.04 TCGA-38-4626-01 1 158943507 158943507 C A PYHIN1 Missense_Mutation p.P477H 0.06 tolerated_low_confidence(0.16) benign(0.129) TCGA-38-4626-01 1 167745338 167745338 G T MPZL1 Missense_Mutation p.A215S 0.07 tolerated(0.05) benign(0.305) TCGA-38-4626-01 1 168262493 168262493 G T TBX19 Missense_Mutation p.V194L 0.06 deleterious(0) probably_damaging(0.999) TCGA-38-4626-01 1 171227132 171227132 C A FMO1 5'UTR 0.12 TCGA-38-4626-01 1 185959439 185959439 C T HMCN1 Silent p.L1081L 0.15 TCGA-38-4626-01 1 18960878 18960878 G A PAX7 Missense_Mutation p.R56H 0.11 deleterious(0) probably_damaging(1) TCGA-38-4626-01 1 203743207 203743207 G T LAX1 Missense_Mutation p.A199S 0.09 deleterious(0.01) possibly_damaging(0.48) TCGA-38-4626-01 1 220100447 220100447 C A SLC30A10 Missense_Mutation p.G214V 0.13 deleterious(0) probably_damaging(0.958) TCGA-38-4626-01 1 220100448 220100448 C A SLC30A10 Splice_Site p.X214_splice 0.13 TCGA-38-4626-01 1 232577115 232577115 G A SIPA1L2 Silent p.S1188S 0.06 TCGA-38-4626-01 1 234565957 234565957 G A TARBP1 Nonsense_Mutation p.Q829* 0.12 TCGA-38-4626-01 1 237666679 237666680 AG T RYR2 Frame_Shift_Del p.K829Nfs*4 0.20 TCGA-38-4626-01 1 237947042 237947042 G C RYR2 Silent p.V4010V 0.07 TCGA-38-4626-01 1 242042514 242042514 A T EXO1 Missense_Mutation p.S660C 0.05 tolerated(0.1) benign(0.004) TCGA-38-4626-01 1 243354347 243354347 C A CEP170 Missense_Mutation p.V361F 0.19 deleterious(0) possibly_damaging(0.797) TCGA-38-4626-01 1 243579109 243579109 G T SDCCAG8 Missense_Mutation p.M574I 0.17 deleterious(0.01) possibly_damaging(0.707) TCGA-38-4626-01 1 247921475 247921475 G T OR1C1 Silent p.V78V 0.13 TCGA-38-4626-01 1 248039832 248039832 C A TRIM58 3'UTR 0.15 TCGA-38-4626-01 1 248112412 248112412 C G OR2L8 Missense_Mutation p.L85V 0.12 deleterious(0.03) benign(0.144) TCGA-38-4626-01 1 248263130 248263130 G T OR2L13 Silent p.G151G 0.13 TCGA-38-4626-01 1 248551546 248551546 G T OR2T6 Missense_Mutation p.V213L 0.11 tolerated(0.28) benign(0.246) TCGA-38-4626-01 1 34083158 34083158 C A CSMD2 Nonsense_Mutation p.E1923* 0.08 TCGA-38-4626-01 1 34663388 34663388 C A C1orf94 Silent p.R295R 0.05 TCGA-38-4626-01 1 38435025 38435025 C A SF3A3 Splice_Site p.X427_splice 0.07 TCGA-38-4626-01 1 45101855 45101855 G T RNF220 Intron 0.10 TCGA-38-4626-01 1 56989949 56989949 C A PPAP2B Missense_Mutation p.R192M 0.08 deleterious(0) probably_damaging(0.973) TCGA-38-4626-01 20 16355030 16355030 C A KIF16B Silent p.L1074L 0.05 TCGA-38-4626-01 20 30584922 30584922 G T XKR7 Missense_Mutation p.A468S 0.07 tolerated(0.19) benign(0.177) TCGA-38-4626-01 20 39992319 39992319 G T EMILIN3 Missense_Mutation p.P158H 0.06 tolerated(0.08) benign(0.098) TCGA-38-4626-01 20 42331360 42331360 C T MYBL2 Silent p.P394P 0.10 TCGA-38-4626-01 20 42331361 42331361 A T MYBL2 Missense_Mutation p.S395C 0.10 tolerated(0.09) benign(0.013) TCGA-38-4626-01 20 55803312 55803312 T C BMP7 Missense_Mutation p.Y195C 0.04 deleterious(0.01) probably_damaging(0.99) TCGA-38-4626-01 20 61445049 61445049 G T OGFR 3'UTR 0.07 TCGA-38-4626-01 20 9404423 9404423 G T PLCB4 Missense_Mutation p.R771I 0.11 deleterious(0) probably_damaging(1) TCGA-38-4626-01 21 15537620 15537620 A T LIPI Nonsense_Mutation p.C296* 0.10 TCGA-38-4626-01 21 28306829 28306829 G T ADAMTS5 Missense_Mutation p.L549M 0.05 tolerated(0.14) possibly_damaging(0.731) TCGA-38-4626-01 21 31692128 31692128 G T KRTAP26-1 Missense_Mutation p.L76I 0.09 tolerated(0.34) benign(0.121) TCGA-38-4626-01 21 31864089 31864089 C A KRTAP19-3 Nonsense_Mutation p.G63* 0.06 TCGA-38-4626-01 21 37741309 37741309 G T MORC3 Missense_Mutation p.R548L 0.12 tolerated(0.32) benign(0.079) TCGA-38-4626-01 21 46057462 46057462 C A KRTAP10-10 Missense_Mutation p.T43N 0.08 deleterious(0) benign(0.011) TCGA-38-4626-01 22 22035675 22035675 A G PPIL2 Missense_Mutation p.Y128C 0.06 deleterious(0) possibly_damaging(0.873) TCGA-38-4626-01 22 25123956 25123956 A G PIWIL3 Missense_Mutation p.I666T 0.10 deleterious(0) probably_damaging(0.971) TCGA-38-4626-01 22 32108284 32108284 G T PRR14L Silent p.T1847T 0.07 TCGA-38-4626-01 2 108488728 108488728 C G RGPD4 Missense_Mutation p.T1423R 0.08 deleterious(0) probably_damaging(0.986) TCGA-38-4626-01 2 109371430 109371430 G A RANBP2 Missense_Mutation p.E758K 0.05 deleterious(0) benign(0.001) TCGA-38-4626-01 2 111398671 111398671 C A BUB1 Missense_Mutation p.K965N 0.10 deleterious(0.02) benign(0.233) TCGA-38-4626-01 2 116525883 116525883 C A DPP10 Missense_Mutation p.P379H 0.11 deleterious(0) probably_damaging(0.923) TCGA-38-4626-01 2 121743871 121743871 C T GLI2 Silent p.P658P 0.11 TCGA-38-4626-01 2 1251123 1251123 G C SNTG2 Missense_Mutation p.E305Q 0.08 deleterious(0) probably_damaging(0.964) TCGA-38-4626-01 2 133542273 133542273 C A NCKAP5 Missense_Mutation p.G704V 0.05 tolerated(0.12) probably_damaging(0.951) TCGA-38-4626-01 2 141135856 141135856 C G LRP1B Splice_Site p.X3511_splice 0.13 TCGA-38-4626-01 2 158272583 158272583 C A CYTIP Missense_Mutation p.G229V 0.05 deleterious(0.04) benign(0.013) TCGA-38-4626-01 2 159166148 159166148 C A CCDC148 Nonsense_Mutation p.E303* 0.08 TCGA-38-4626-01 2 168102024 168102024 C A XIRP2 Silent p.V1374V 0.07 TCGA-38-4626-01 2 185803228 185803228 G T ZNF804A Missense_Mutation p.L1035F 0.06 deleterious(0.01) probably_damaging(0.986) TCGA-38-4626-01 2 189904125 189904125 T A COL5A2 Silent p.P1266P 0.07 TCGA-38-4626-01 2 207041255 207041255 C A GPR1 Silent p.L239L 0.08 TCGA-38-4626-01 2 207564941 207564941 C A DYTN Splice_Site p.X162_splice 0.07 TCGA-38-4626-01 2 21229397 21229397 G T APOB Missense_Mutation p.T3448N 0.07 possibly_damaging(0.772) TCGA-38-4626-01 2 21233785 21233785 G A APOB Silent p.T1985T 0.06 TCGA-38-4626-01 2 219695055 219695055 G A PRKAG3 Silent p.F93F 0.11 TCGA-38-4626-01 2 220333380 220333380 G T SPEG Missense_Mutation p.V1075L 0.05 probably_damaging(0.988) TCGA-38-4626-01 2 228882479 228882479 C A SPHKAP Missense_Mutation p.V1031F 0.06 deleterious(0.04) possibly_damaging(0.56) TCGA-38-4626-01 2 234227423 234227423 C A SAG Missense_Mutation p.L55I 0.08 tolerated(0.12) benign(0.02) TCGA-38-4626-01 2 234652078 234652078 G T UGT1A10 Intron 0.24 TCGA-38-4626-01 2 234652384 234652384 T C UGT1A10 Intron 0.06 TCGA-38-4626-01 2 239976512 239976512 T A HDAC4 Missense_Mutation p.E1002D 0.08 tolerated(0.11) benign(0.001) TCGA-38-4626-01 2 29136535 29136535 G T WDR43 Intron 0.06 TCGA-38-4626-01 2 29551252 29551252 C A ALK Missense_Mutation p.D460Y 0.09 deleterious(0) possibly_damaging(0.905) TCGA-38-4626-01 2 37076763 37076763 C T STRN Missense_Mutation p.D727N 0.05 deleterious(0) probably_damaging(0.998) TCGA-38-4626-01 2 42515415 42515415 C G EML4 Missense_Mutation p.L391V 0.03 deleterious(0) benign(0.234) TCGA-38-4626-01 2 54159167 54159167 T C PSME4 Missense_Mutation p.K374R 0.11 tolerated(0.4) benign(0.002) TCGA-38-4626-01 2 54365795 54365795 G C ACYP2 Missense_Mutation p.R32T 0.09 tolerated(0.14) benign(0.005) TCGA-38-4626-01 2 54839363 54839363 C T SPTBN1 Silent p.F122F 0.04 TCGA-38-4626-01 2 61484357 61484357 T A USP34 Missense_Mutation p.E1991D 0.09 deleterious(0.01) probably_damaging(0.99) TCGA-38-4626-01 2 61566728 61566728 C G USP34 Missense_Mutation p.L863F 0.06 deleterious(0) probably_damaging(0.998) TCGA-38-4626-01 2 69304562 69304562 A C ANTXR1 Missense_Mutation p.K195T 0.06 tolerated(0.22) benign(0.148) TCGA-38-4626-01 2 74593020 74593020 C T DCTN1 Silent p.K962K 0.06 TCGA-38-4626-01 2 86433312 86433312 A C MRPL35 Missense_Mutation p.T43P 0.09 tolerated(0.14) benign(0.006) TCGA-38-4626-01 2 89459447 89459447 C A IGKV6-21 Missense_Mutation p.A44S 0.12 tolerated(0.13) probably_damaging(0.951) TCGA-38-4626-01 3 108102463 108102463 T - MYH15 Frame_Shift_Del p.A1936Qfs*81 0.09 TCGA-38-4626-01 3 118623644 118623644 G A IGSF11 Silent p.P235P 0.08 TCGA-38-4626-01 3 120347143 120347143 C A HGD 3'UTR 0.08 TCGA-38-4626-01 3 121126216 121126216 G - STXBP5L Frame_Shift_Del p.W929* 0.19 TCGA-38-4626-01 3 122274537 122274537 C A PARP9 Missense_Mutation p.A196S 0.06 deleterious(0.01) probably_damaging(0.977) TCGA-38-4626-01 3 129251250 129251250 C A RHO Silent p.T229T 0.09 TCGA-38-4626-01 3 150690263 150690263 G C CLRN1 Missense_Mutation p.A78G 0.05 tolerated(1) benign(0.002) TCGA-38-4626-01 3 160474182 160474182 T C PPM1L Missense_Mutation p.L29P 0.16 tolerated(0.14) probably_damaging(0.942) TCGA-38-4626-01 3 164709251 164709251 G T SI Silent p.G1666G 0.11 TCGA-38-4626-01 3 183822012 183822012 G A HTR3E Missense_Mutation p.E108K 0.09 tolerated(0.76) benign(0.043) TCGA-38-4626-01 3 47289507 47289507 C A KIF9 Splice_Site p.X376_splice 0.09 TCGA-38-4626-01 3 98188903 98188903 G T OR5K1 Silent p.G161G 0.03 TCGA-38-4626-01 4 103910990 103910990 G C SLC9B1 Missense_Mutation p.L60V 0.16 tolerated(0.07) benign(0.01) TCGA-38-4626-01 4 159162701 159162701 T G TMEM144 Missense_Mutation p.C281W 0.09 deleterious(0.01) possibly_damaging(0.687) TCGA-38-4626-01 4 169300609 169300609 G A DDX60L Missense_Mutation p.A1423V 0.13 tolerated(1) benign(0) TCGA-38-4626-01 4 170912688 170912688 T A MFAP3L Silent p.A357A 0.06 TCGA-38-4626-01 4 175220265 175220265 G T CEP44 5'UTR 0.09 TCGA-38-4626-01 4 187195502 187195502 C T F11 Intron 0.11 TCGA-38-4626-01 4 2321937 2321937 C G ZFYVE28 Missense_Mutation p.E255Q 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-38-4626-01 4 55953774 55953774 C A KDR Missense_Mutation p.S1221I 0.09 tolerated(0.1) benign(0.439) TCGA-38-4626-01 4 76797517 76797517 C A PPEF2 Nonsense_Mutation p.E415* 0.14 TCGA-38-4626-01 4 78830509 78830509 C T MRPL1 Nonsense_Mutation p.Q254* 0.05 TCGA-38-4626-01 5 10410252 10410252 G A MARCH6 Missense_Mutation p.D519N 0.21 tolerated(0.09) probably_damaging(0.928) TCGA-38-4626-01 5 126754829 126754829 C G MEGF10 Silent p.T441T 0.06 TCGA-38-4626-01 5 126792950 126792950 C T MEGF10 Silent p.S1121S 0.12 TCGA-38-4626-01 5 134002584 134002584 C T SEC24A Missense_Mutation p.P213S 0.10 tolerated(0.13) probably_damaging(0.999) TCGA-38-4626-01 5 140181956 140181956 C A PCDHA3 Missense_Mutation p.H392N 0.04 tolerated_low_confidence(0.21) benign(0.039) TCGA-38-4626-01 5 140229828 140229828 G A PCDHA9 Missense_Mutation p.R583Q 0.08 tolerated_low_confidence(0.13) possibly_damaging(0.708) TCGA-38-4626-01 5 140249814 140249814 C A PCDHA11 Missense_Mutation p.R376S 0.12 deleterious_low_confidence(0.04) benign(0.215) TCGA-38-4626-01 5 170640697 170640697 G T RANBP17 Missense_Mutation p.C765F 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-38-4626-01 5 180166174 180166174 G A OR2Y1 Silent p.D295D 0.03 TCGA-38-4626-01 5 23522766 23522766 C G PRDM9 Silent p.A218A 0.19 TCGA-38-4626-01 5 26906121 26906121 G T CDH9 Missense_Mutation p.T253K 0.05 deleterious(0.03) possibly_damaging(0.656) TCGA-38-4626-01 5 32786366 32786366 G T NPR3 Missense_Mutation p.R514M 0.32 deleterious(0) probably_damaging(0.987) TCGA-38-4626-01 5 33445440 33445440 G T TARS Missense_Mutation p.G23V 0.19 tolerated_low_confidence(0.24) benign(0.18) TCGA-38-4626-01 5 33546167 33546167 G T ADAMTS12 Missense_Mutation p.D1481E 0.07 tolerated(0.23) benign(0.015) TCGA-38-4626-01 5 34823639 34823639 G T RAI14 Missense_Mutation p.E567D 0.07 tolerated(0.08) benign(0.046) TCGA-38-4626-01 5 36955648 36955648 G C NIPBL Missense_Mutation p.A47P 0.25 deleterious(0) possibly_damaging(0.893) TCGA-38-4626-01 5 37049220 37049220 A T NIPBL Missense_Mutation p.K2257N 0.09 tolerated(0.13) benign(0.065) TCGA-38-4626-01 5 39134975 39134975 T G FYB Silent p.R563R 0.11 TCGA-38-4626-01 5 71756814 71756814 C A ZNF366 Silent p.L170L 0.10 TCGA-38-4626-01 5 74100403 74100403 G T FAM169A Missense_Mutation p.P276H 0.07 tolerated(0.14) benign(0.413) TCGA-38-4626-01 5 75964638 75964638 C - IQGAP2 Frame_Shift_Del p.L938Ffs*10 0.10 TCGA-38-4626-01 6 136597201 136597201 T A BCLAF1 Missense_Mutation p.I488L 0.05 tolerated(0.51) benign(0.068) TCGA-38-4626-01 6 139097279 139097279 A G CCDC28A Missense_Mutation p.R98G 0.18 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-38-4626-01 6 152725441 152725441 A C SYNE1 Silent p.V2244V 0.06 TCGA-38-4626-01 6 161508882 161508882 G T MAP3K4 Missense_Mutation p.G907C 0.17 tolerated(0.18) benign(0.024) TCGA-38-4626-01 6 165792703 165792703 G T PDE10A Missense_Mutation p.N655K 0.07 deleterious(0.02) benign(0.325) TCGA-38-4626-01 6 51890920 51890920 C - PKHD1 Frame_Shift_Del p.V1230Yfs*11 0.13 TCGA-38-4626-01 6 53519984 53519984 T C KLHL31 Silent p.K29K 0.06 TCGA-38-4626-01 6 56418454 56418454 C G DST Splice_Site p.X2423_splice 0.09 TCGA-38-4626-01 6 90604267 90604267 C A GJA10 Missense_Mutation p.T27N 0.10 deleterious(0) probably_damaging(0.982) TCGA-38-4626-01 7 100677757 100677757 C A MUC17 Silent p.A1020A 0.04 TCGA-38-4626-01 7 101952177 101952177 C T SH2B2 Silent p.C347C 0.07 TCGA-38-4626-01 7 127255550 127255550 C A PAX4 Missense_Mutation p.V9L 0.05 deleterious(0.01) probably_damaging(0.985) TCGA-38-4626-01 7 127892140 127892140 C T LEP Silent p.P23P 0.08 TCGA-38-4626-01 7 128493588 128493588 G T FLNC Nonsense_Mutation p.E2092* 0.09 TCGA-38-4626-01 7 141758016 141758016 C T MGAM Missense_Mutation p.P1236L 0.07 deleterious(0) probably_damaging(0.999) TCGA-38-4626-01 7 141955355 141955355 G C PRSS58 Missense_Mutation p.P60R 0.07 tolerated(0.08) probably_damaging(0.99) TCGA-38-4626-01 7 142574936 142574936 C A TRPV6 Missense_Mutation p.G149V 0.09 deleterious(0) probably_damaging(1) TCGA-38-4626-01 7 150164216 150164216 C A GIMAP8 Missense_Mutation p.L144M 0.07 tolerated(0.07) probably_damaging(0.923) TCGA-38-4626-01 7 15430503 15430503 T A AGMO Missense_Mutation p.N235I 0.20 deleterious(0) probably_damaging(1) TCGA-38-4626-01 7 19184745 19184745 C A FERD3L Nonsense_Mutation p.E81* 0.19 TCGA-38-4626-01 7 27141063 27141063 C A HOXA2 Missense_Mutation p.G138V 0.09 tolerated(0.12) benign(0.066) TCGA-38-4626-01 7 39247049 39247049 C A POU6F2 Missense_Mutation p.P114H 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.898) TCGA-38-4626-01 7 43531769 43531769 A G HECW1 Silent p.S1110S 0.12 TCGA-38-4626-01 7 57188064 57188064 T C ZNF479 Missense_Mutation p.Y353C 0.14 deleterious(0.01) benign(0.342) TCGA-38-4626-01 7 82583786 82583786 C A PCLO Silent p.S2161S 0.05 TCGA-38-4626-01 7 87179543 87179543 C T ABCB1 Missense_Mutation p.G432R 0.11 deleterious(0.01) probably_damaging(1) TCGA-38-4626-01 7 92731291 92731291 C A SAMD9 Nonsense_Mutation p.E1374* 0.08 TCGA-38-4626-01 7 95616384 95616384 G T DYNC1I1 Missense_Mutation p.A271S 0.04 tolerated(0.4) benign(0.002) TCGA-38-4626-01 7 97822649 97822649 G T LMTK2 Missense_Mutation p.A958S 0.06 tolerated(0.25) benign(0.031) TCGA-38-4626-01 7 99445237 99445237 G A CYP3A43 Intron 0.08 TCGA-38-4626-01 8 101601166 101601166 G T SNX31 Missense_Mutation p.N340K 0.07 tolerated(0.17) benign(0.169) TCGA-38-4626-01 8 10583456 10583456 T A SOX7 Missense_Mutation p.Q372L 0.12 deleterious(0.03) probably_damaging(0.991) TCGA-38-4626-01 8 116617157 116617157 G C TRPS1 Missense_Mutation p.R347G 0.05 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-38-4626-01 8 124266616 124266616 C A ZHX1 Missense_Mutation p.S524I 0.07 deleterious(0.01) benign(0.067) TCGA-38-4626-01 8 144994569 144994569 C A PLEC Silent p.T3277T 0.20 TCGA-38-4626-01 8 25716008 25716008 T C EBF2 Missense_Mutation p.N452S 0.11 tolerated(0.35) probably_damaging(0.931) TCGA-38-4626-01 8 28573840 28573840 G T EXTL3 Silent p.S88S 0.12 TCGA-38-4626-01 8 36768544 36768544 C A KCNU1 Missense_Mutation p.Q810K 0.14 tolerated(0.07) benign(0.298) TCGA-38-4626-01 8 37704488 37704488 C A BRF2 Silent p.T140T 0.04 TCGA-38-4626-01 8 39468320 39468320 G T ADAM18 Intron 0.14 TCGA-38-4626-01 8 49987813 49987814 - A C8orf22 3'UTR 0.08 TCGA-38-4626-01 8 67492485 67492485 C T MYBL1 Silent p.Q328Q 0.16 TCGA-38-4626-01 8 9623218 9623218 A T TNKS Missense_Mutation p.N1155I 0.07 deleterious(0) probably_damaging(1) TCGA-38-4626-01 9 101797630 101797630 A T COL15A1 Splice_Site p.X741_splice 0.09 TCGA-38-4626-01 9 112898635 112898635 G T PALM2-AKAP2 Missense_Mutation p.D271Y 0.04 deleterious(0.01) possibly_damaging(0.847) TCGA-38-4626-01 9 120475650 120475650 G T TLR4 Missense_Mutation p.S415I 0.07 deleterious(0.02) benign(0.434) TCGA-38-4626-01 9 137803106 137803106 G T FCN1 Missense_Mutation p.S202R 0.12 tolerated(0.33) probably_damaging(0.917) TCGA-38-4626-01 9 32543811 32543811 T A TOPORS Missense_Mutation p.R238W 0.03 deleterious(0) probably_damaging(0.975) TCGA-38-4626-01 9 35403960 35403960 G T UNC13B Missense_Mutation p.S1569I 0.06 deleterious(0.03) benign(0.059) TCGA-38-4626-01 9 94486066 94486066 C A ROR2 Missense_Mutation p.G904W 0.08 deleterious_low_confidence(0.02) benign(0.267) TCGA-38-4626-01 9 95163438 95163438 C T OGN Silent p.E68E 0.04 TCGA-38-4626-01 9 98678023 98678023 A T ERCC6L2 Missense_Mutation p.M299L 0.10 tolerated(0.24) benign(0.044) TCGA-38-4626-01 X 100291990 100291990 C A TRMT2B Missense_Mutation p.V171L 0.04 deleterious(0.01) benign(0.252) TCGA-38-4626-01 X 100662735 100662735 T A GLA Missense_Mutation p.N53Y 0.05 deleterious(0) probably_damaging(0.975) TCGA-38-4626-01 X 101096045 101096045 C A NXF5 Silent p.L141L 0.03 TCGA-38-4626-01 X 101911404 101911404 G T GPRASP1 Nonsense_Mutation p.E855* 0.04 TCGA-38-4626-01 X 102338133 102338133 C A NXF3 Silent p.V203V 0.07 TCGA-38-4626-01 X 106117037 106117037 T A TBC1D8B Missense_Mutation p.F1069I 0.03 tolerated(0.43) benign(0) TCGA-38-4626-01 X 107377577 107377577 G T ATG4A Missense_Mutation p.G135C 0.09 deleterious(0.03) probably_damaging(1) TCGA-38-4626-01 X 109695829 109695831 GCC AT RGAG1 Frame_Shift_Del p.A662Ifs*9 0.13 TCGA-38-4626-01 X 110925492 110925492 C T ALG13 Nonsense_Mutation p.Q72* 0.03 TCGA-38-4626-01 X 114141513 114141513 C A HTR2C Missense_Mutation p.N304K 0.08 tolerated(0.29) benign(0.115) TCGA-38-4626-01 X 114141543 114141543 G A HTR2C Silent p.G314G 0.07 TCGA-38-4626-01 X 117079444 117079444 G T KLHL13 Missense_Mutation p.P68T 0.05 tolerated(0.61) benign(0.005) TCGA-38-4626-01 X 123019764 123019764 G T XIAP Missense_Mutation p.R84S 0.04 deleterious(0) possibly_damaging(0.881) TCGA-38-4626-01 X 125298618 125298618 C A DCAF12L2 Silent p.A430A 0.09 TCGA-38-4626-01 X 125298934 125298934 G C DCAF12L2 Missense_Mutation p.S325C 0.05 tolerated(0.2) benign(0.111) TCGA-38-4626-01 X 128890485 128890485 C A XPNPEP2 Missense_Mutation p.L441M 0.06 deleterious(0) probably_damaging(0.997) TCGA-38-4626-01 X 128975899 128975899 T A ZDHHC9 Missense_Mutation p.K8M 0.04 deleterious(0.01) possibly_damaging(0.707) TCGA-38-4626-01 X 129147341 129147341 C A BCORL1 Missense_Mutation p.P198H 0.04 unknown(0) TCGA-38-4626-01 X 130408104 130408104 C A IGSF1 Silent p.G1281G 0.05 TCGA-38-4626-01 X 132159958 132159958 C A USP26 Missense_Mutation p.G764V 0.03 tolerated(0.26) benign(0.028) TCGA-38-4626-01 X 132438835 132438835 G T GPC4 Missense_Mutation p.P404T 0.07 deleterious(0) possibly_damaging(0.649) TCGA-38-4626-01 X 135482265 135482265 A T GPR112 Silent p.L2855L 0.06 TCGA-38-4626-01 X 140993218 140993218 G T MAGEC1 Missense_Mutation p.G10W 0.03 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-38-4626-01 X 142717341 142717341 C A SLITRK4 Missense_Mutation p.L528F 0.04 deleterious(0) probably_damaging(0.994) TCGA-38-4626-01 X 144904119 144904119 C A SLITRK2 Missense_Mutation p.P59H 0.08 tolerated(0.11) probably_damaging(0.986) TCGA-38-4626-01 X 148568624 148568624 C A IDS Missense_Mutation p.A127S 0.06 tolerated(1) benign(0.02) TCGA-38-4626-01 X 149013858 149013858 G A MAGEA8 Missense_Mutation p.R271H 0.05 tolerated(0.16) benign(0.02) TCGA-38-4626-01 X 152807850 152807850 C G ATP2B3 Missense_Mutation p.T245R 0.09 deleterious(0) probably_damaging(1) TCGA-38-4626-01 X 153141232 153141232 G A L1CAM Silent p.I20I 0.05 TCGA-38-4626-01 X 153496193 153496193 G T OPN1MW2 Silent p.P307P 0.11 TCGA-38-4626-01 X 153551614 153551614 G T TKTL1 Missense_Mutation p.K416N 0.06 tolerated(0.6) benign(0) TCGA-38-4626-01 X 18972504 18972504 G T PHKA2 Silent p.A35A 0.07 TCGA-38-4626-01 X 23412216 23412216 A T PTCHD1 Missense_Mutation p.N861Y 0.05 tolerated(0.07) benign(0.259) TCGA-38-4626-01 X 32382758 32382758 C T DMD Missense_Mutation p.D1699N 0.04 benign(0.015) TCGA-38-4626-01 X 3240239 3240239 G A MXRA5 Missense_Mutation p.R1163C 0.07 deleterious(0) possibly_damaging(0.828) TCGA-38-4626-01 X 37965979 37965979 G T SYTL5 Missense_Mutation p.C452F 0.06 deleterious(0) probably_damaging(1) TCGA-38-4626-01 X 38132700 38132700 G C TM4SF2 Intron 0.06 TCGA-38-4626-01 X 38169932 38169932 C A RPGR Silent p.V238V 0.10 TCGA-38-4626-01 X 39931720 39931720 G T BCOR Missense_Mutation p.S960Y 0.10 deleterious(0) probably_damaging(0.997) TCGA-38-4626-01 X 44703492 44703492 C G DUSP21 Missense_Mutation p.N38K 0.07 tolerated(0.19) benign(0.357) TCGA-38-4626-01 X 69397412 69397412 C A DGAT2L6 5'UTR 0.04 TCGA-38-4626-01 X 77912683 77912683 G T ZCCHC5 Missense_Mutation p.P412H 0.08 deleterious(0.02) possibly_damaging(0.525) TCGA-38-4626-01 X 78426662 78426662 G T GPR174 Missense_Mutation p.R53L 0.09 deleterious(0) possibly_damaging(0.767) TCGA-38-4626-01 X 83128563 83128563 T A CYLC1 Missense_Mutation p.Y283N 0.09 tolerated(0.68) unknown(0) TCGA-38-4626-01 X 83372409 83372409 G T RPS6KA6 Silent p.T281T 0.12 TCGA-38-4626-01 X 84363147 84363147 C A SATL1 Missense_Mutation p.M276I 0.08 tolerated(0.12) possibly_damaging(0.758) TCGA-38-4627-01 11 55563607 55563607 T A OR5D14 Silent p.S192S 0.08 TCGA-38-4627-01 11 55563608 55563608 G T OR5D14 Missense_Mutation p.D193Y 0.08 deleterious(0) probably_damaging(0.992) TCGA-38-4627-01 12 85677431 85677431 G A ALX1 Missense_Mutation p.R103Q 0.12 deleterious(0.03) benign(0.247) TCGA-38-4627-01 13 70314633 70314633 G T KLHL1 Missense_Mutation p.S565R 0.07 deleterious(0) probably_damaging(0.998) TCGA-38-4627-01 14 20586121 20586121 C T OR4K17 Missense_Mutation p.H186Y 0.10 deleterious(0) probably_damaging(1) TCGA-38-4627-01 14 94780977 94780977 G A SERPINA6 Silent p.L3L 0.07 TCGA-38-4627-01 16 53326814 53326814 G A CHD9 Missense_Mutation p.R1787H 0.15 probably_damaging(1) TCGA-38-4627-01 17 10542739 10542739 A - MYH3 Frame_Shift_Del p.L993* 0.09 TCGA-38-4627-01 17 3638115 3638115 T A ITGAE Missense_Mutation p.Q884L 0.10 deleterious(0.04) probably_damaging(0.932) TCGA-38-4627-01 17 42155733 42155733 G A HDAC5 3'UTR 0.19 TCGA-38-4627-01 17 56606477 56606477 C A SEPT4 Intron 0.05 TCGA-38-4627-01 17 59024579 59024579 G T BCAS3 Splice_Site p.X363_splice 0.09 TCGA-38-4627-01 17 7416688 7416688 C T POLR2A Missense_Mutation p.T1702I 0.20 unknown(0) TCGA-38-4627-01 19 56173908 56173908 G A U2AF2 Missense_Mutation p.G176E 0.04 tolerated(0.8) benign(0.068) TCGA-38-4627-01 1 208073342 208073342 C T CD34 Missense_Mutation p.G29E 0.14 tolerated(0.24) possibly_damaging(0.617) TCGA-38-4627-01 1 34071024 34071024 G A CSMD2 Silent p.G2132G 0.09 TCGA-38-4627-01 20 25485627 25485627 C A NINL Missense_Mutation p.R202L 0.06 deleterious(0.01) benign(0.081) TCGA-38-4627-01 22 19398295 19398295 G A HIRA Missense_Mutation p.P15L 0.10 deleterious(0) probably_damaging(1) TCGA-38-4627-01 22 32833811 32833811 A T BPIFC Missense_Mutation p.L228Q 0.09 tolerated(0.13) possibly_damaging(0.855) TCGA-38-4627-01 2 179440815 179440815 G A TTN Silent p.A23348A 0.08 TCGA-38-4627-01 2 190742066 190742066 C G PMS1 Missense_Mutation p.I901M 0.09 tolerated(0.15) benign(0.081) TCGA-38-4627-01 3 141295935 141295935 G A RASA2 Missense_Mutation p.R526Q 0.10 deleterious(0.03) probably_damaging(0.998) TCGA-38-4627-01 3 143550932 143550932 C A SLC9A9 Nonsense_Mutation p.E103* 0.10 TCGA-38-4627-01 5 137527959 137527959 G A CDC23 Nonsense_Mutation p.R429* 0.14 TCGA-38-4627-01 5 141233671 141233671 G A PCDH1 Missense_Mutation p.S1217L 0.22 tolerated(0.06) benign(0.027) TCGA-38-4627-01 6 20758841 20758841 C T CDKAL1 Missense_Mutation p.R162C 0.10 deleterious(0.02) possibly_damaging(0.67) TCGA-38-4627-01 6 25813423 25813423 A G SLC17A1 Missense_Mutation p.V212A 0.12 tolerated(0.11) benign(0.077) TCGA-38-4627-01 6 33380553 33380553 G A PHF1 Missense_Mutation p.C107Y 0.06 deleterious(0) probably_damaging(1) TCGA-38-4627-01 6 37450921 37450921 G A CCDC167 3'UTR 0.07 TCGA-38-4627-01 7 12270022 12270022 A G TMEM106B Missense_Mutation p.Y197C 0.06 deleterious(0) probably_damaging(0.979) TCGA-38-4627-01 7 148800831 148800831 G A ZNF425 Missense_Mutation p.A711V 0.19 tolerated(0.23) benign(0.043) TCGA-38-4627-01 7 55210075 55210075 T G EGFR Missense_Mutation p.L62R 0.15 deleterious(0.01) probably_damaging(0.962) TCGA-38-4627-01 7 55259515 55259515 T G EGFR Missense_Mutation p.L858R 0.12 deleterious(0) probably_damaging(1) TCGA-38-4627-01 8 88885731 88885731 C T DCAF4L2 Missense_Mutation p.V157M 0.06 tolerated(0.07) possibly_damaging(0.715) TCGA-38-4627-01 X 153764207 153764207 G A G6PD Missense_Mutation p.A101V 0.06 deleterious(0) probably_damaging(0.929) TCGA-38-4627-01 X 31496381 31496381 T A DMD Nonsense_Mutation p.R2927* 0.07 TCGA-38-4627-01 X 3235707 3235707 G A MXRA5 Silent p.H2005H 0.12 TCGA-38-4628-01 10 105657388 105657388 A C OBFC1 Missense_Mutation p.F224C 0.67 deleterious(0) probably_damaging(1) TCGA-38-4628-01 10 25887829 25887829 A G GPR158 Missense_Mutation p.T1092A 0.60 tolerated(0.24) benign(0.01) TCGA-38-4628-01 10 7262456 7262456 G T SFMBT2 Missense_Mutation p.A416D 0.57 deleterious(0) probably_damaging(0.972) TCGA-38-4628-01 10 82180281 82180281 G A FAM213A Missense_Mutation p.G20R 0.04 deleterious(0) probably_damaging(1) TCGA-38-4628-01 11 118971518 118971518 G A DPAGT1 Silent p.C106C 0.18 TCGA-38-4628-01 11 22281108 22281108 G A ANO5 Missense_Mutation p.R484H 0.13 deleterious(0) probably_damaging(1) TCGA-38-4628-01 11 36520069 36520069 A G TRAF6 Silent p.L140L 0.25 TCGA-38-4628-01 11 4566720 4566720 G T OR52M1 Missense_Mutation p.L100F 0.10 deleterious(0.02) benign(0.076) TCGA-38-4628-01 11 45926281 45926281 C T MAPK8IP1 Missense_Mutation p.R597C 0.20 deleterious(0) probably_damaging(0.991) TCGA-38-4628-01 11 48510483 48510483 G A OR4A47 Missense_Mutation p.V47I 0.61 tolerated_low_confidence(0.65) benign(0.013) TCGA-38-4628-01 11 49831543 49831543 A C RP11-707M1.1 RNA 0.65 TCGA-38-4628-01 11 58723260 58723260 G T GLYATL1 Missense_Mutation p.M254I 0.25 deleterious(0.01) possibly_damaging(0.614) TCGA-38-4628-01 11 58892054 58892054 C G FAM111B Missense_Mutation p.Q162E 0.07 tolerated(0.27) benign(0.003) TCGA-38-4628-01 11 66189606 66189606 G T NPAS4 Missense_Mutation p.G64V 0.14 tolerated(0.06) benign(0.075) TCGA-38-4628-01 11 66359594 66359594 G A CCDC87 Missense_Mutation p.S298F 0.20 tolerated(0.14) benign(0.003) TCGA-38-4628-01 11 7079029 7079030 CT G NLRP14 Frame_Shift_Del p.L805Vfs*6 0.13 TCGA-38-4628-01 11 71719881 71719881 G C NUMA1 Missense_Mutation p.A1690G 0.08 probably_damaging(0.999) TCGA-38-4628-01 12 120580382 120580383 - C GCN1L1 Frame_Shift_Ins p.R1920Afs*2 0.31 TCGA-38-4628-01 12 41587896 41587896 G A PDZRN4 Missense_Mutation p.G250E 0.12 tolerated_low_confidence(0.17) benign(0) TCGA-38-4628-01 12 49666727 49666727 A G TUBA1C Missense_Mutation p.N356S 0.09 deleterious_low_confidence(0.01) probably_damaging(0.963) TCGA-38-4628-01 12 53412608 53412608 G A EIF4B Missense_Mutation p.D60N 0.31 deleterious(0.04) possibly_damaging(0.539) TCGA-38-4628-01 12 55421372 55421372 C A NEUROD4 3'UTR 0.16 TCGA-38-4628-01 12 64055199 64055199 C A DPY19L2 Missense_Mutation p.W171C 0.05 tolerated(0.06) benign(0.082) TCGA-38-4628-01 12 7060825 7060825 G T PTPN6 Missense_Mutation p.R21L 0.12 deleterious(0.01) benign(0.164) TCGA-38-4628-01 12 85450634 85450634 G A LRRIQ1 Missense_Mutation p.S688N 0.20 tolerated(0.1) benign(0.108) TCGA-38-4628-01 13 26343230 26343230 C A ATP8A2 Silent p.R811R 0.36 TCGA-38-4628-01 13 41507961 41507961 T A ELF1 Missense_Mutation p.Q487L 0.25 tolerated(0.05) benign(0.21) TCGA-38-4628-01 13 73333994 73333994 G C DIS3 Missense_Mutation p.T939S 0.27 tolerated(0.84) benign(0) TCGA-38-4628-01 13 77755944 77755944 A G MYCBP2 Silent p.D1573D 0.29 TCGA-38-4628-01 14 20389573 20389573 T C OR4K5 Missense_Mutation p.F270L 0.05 tolerated(0.16) benign(0.001) TCGA-38-4628-01 14 21543035 21543035 G C ARHGEF40 Missense_Mutation p.K382N 0.18 deleterious(0) probably_damaging(0.977) TCGA-38-4628-01 14 21681149 21681161 CACTCTTAGAATT - HNRNPC Frame_Shift_Del p.N174Dfs*11 0.14 TCGA-38-4628-01 14 32030658 32030658 C T NUBPL Nonsense_Mutation p.Q5* 0.11 TCGA-38-4628-01 14 36217939 36217939 G C RALGAPA1 Missense_Mutation p.S368C 0.57 deleterious(0) probably_damaging(0.999) TCGA-38-4628-01 14 50088220 50088220 G T MGAT2 Silent p.A78A 0.25 TCGA-38-4628-01 14 68274475 68274475 G T ZFYVE26 Missense_Mutation p.L176I 0.15 tolerated(0.34) possibly_damaging(0.477) TCGA-38-4628-01 14 90499508 90499508 C G TDP1 Missense_Mutation p.A568G 0.46 tolerated(0.27) benign(0.001) TCGA-38-4628-01 14 94914835 94914835 C A SERPINA11 Missense_Mutation p.A93S 0.13 tolerated(1) benign(0.418) TCGA-38-4628-01 15 41988517 41988517 G T MGA Nonsense_Mutation p.E437* 0.48 TCGA-38-4628-01 15 45723236 45723236 G A C15orf48 Missense_Mutation p.G25D 0.19 tolerated(0.22) benign(0.178) TCGA-38-4628-01 15 58001463 58001463 C T POLR2M Missense_Mutation p.S222F 0.17 tolerated(0.7) benign(0.149) TCGA-38-4628-01 15 66792408 66792408 G A RPL4 Missense_Mutation p.R342C 0.07 tolerated(0.1) benign(0.022) TCGA-38-4628-01 15 74883593 74883593 G A ARID3B Missense_Mutation p.R328Q 0.12 deleterious(0) probably_damaging(0.997) TCGA-38-4628-01 16 1825151 1825151 G A EME2 Intron 0.11 TCGA-38-4628-01 16 1825152 1825152 C A EME2 Intron 0.12 TCGA-38-4628-01 16 19702685 19702685 C T C16orf62 Silent p.N935N 0.19 TCGA-38-4628-01 16 25175965 25175965 C G LCMT1 Missense_Mutation p.P206A 0.04 tolerated(0.2) benign(0.002) TCGA-38-4628-01 16 29825755 29825755 C A PRRT2 Silent p.I327I 0.07 TCGA-38-4628-01 16 30133363 30133363 T G MAPK3 Intron 0.10 TCGA-38-4628-01 16 51174943 51174943 G T SALL1 Missense_Mutation p.S397Y 0.08 deleterious(0.01) benign(0.278) TCGA-38-4628-01 16 51175382 51175382 G A SALL1 Missense_Mutation p.R251C 0.08 tolerated(0.06) probably_damaging(0.912) TCGA-38-4628-01 16 81009986 81009986 C A CMC2 3'UTR 0.24 TCGA-38-4628-01 16 85695049 85695049 G T GSE1 Silent p.L646L 0.24 TCGA-38-4628-01 17 26818601 26818601 G C SLC13A2 Missense_Mutation p.A290P 0.15 tolerated(0.12) possibly_damaging(0.502) TCGA-38-4628-01 17 29325909 29325909 G A RNF135 Silent p.E333E 0.18 TCGA-38-4628-01 17 3343538 3343538 C A SPATA22 Missense_Mutation p.R332I 0.05 deleterious(0) probably_damaging(0.961) TCGA-38-4628-01 17 33690840 33690840 C A SLFN11 5'UTR 0.35 TCGA-38-4628-01 17 37627359 37627359 T C CDK12 Missense_Mutation p.V425A 0.15 benign(0.037) TCGA-38-4628-01 17 44061120 44061120 A C MAPT Missense_Mutation p.H317P 0.09 tolerated(0.25) benign(0.001) TCGA-38-4628-01 17 45822618 45822618 G C TBX21 Missense_Mutation p.K498N 0.10 deleterious(0) probably_damaging(0.991) TCGA-38-4628-01 17 48918350 48918350 C T WFIKKN2 Silent p.D567D 0.08 TCGA-38-4628-01 18 12546780 12546780 C G SPIRE1 Missense_Mutation p.A166P 0.13 tolerated(0.15) benign(0.098) TCGA-38-4628-01 18 30913186 30913186 C A CCDC178 Missense_Mutation p.Q277H 0.30 tolerated(0.14) benign(0.001) TCGA-38-4628-01 18 670729 670729 C G TYMS Silent p.L198L 0.17 TCGA-38-4628-01 19 30935455 30935455 C A ZNF536 Missense_Mutation p.A329D 0.07 tolerated(0.14) probably_damaging(0.914) TCGA-38-4628-01 19 33503585 33503585 C G RHPN2 Missense_Mutation p.D146H 0.11 deleterious(0.04) probably_damaging(0.961) TCGA-38-4628-01 19 36054337 36054337 C A ATP4A Silent p.G35G 0.07 TCGA-38-4628-01 19 36333449 36333451 CTC - NPHS1 In_Frame_Del p.G779del 0.12 TCGA-38-4628-01 19 39025446 39025446 C T RYR1 Silent p.I3782I 0.11 TCGA-38-4628-01 19 45885837 45885837 C T PPP1R13L Nonsense_Mutation p.W799* 0.19 TCGA-38-4628-01 19 52380585 52380585 C G ZNF577 Missense_Mutation p.G78A 0.06 deleterious(0.04) probably_damaging(0.992) TCGA-38-4628-01 19 55253461 55253461 G T KIR2DL3 Missense_Mutation p.G36C 0.18 deleterious(0) probably_damaging(1) TCGA-38-4628-01 19 55378197 55378197 G T KIR3DL2 3'UTR 0.61 TCGA-38-4628-01 1 152323784 152323784 A T FLG2 Missense_Mutation p.S2160T 0.19 benign(0.203) TCGA-38-4628-01 1 152573217 152573217 C A LCE3C Missense_Mutation p.Q4K 0.08 deleterious_low_confidence(0) unknown(0) TCGA-38-4628-01 1 153927404 153927404 C T CRTC2 Missense_Mutation p.R106Q 0.13 deleterious(0.04) benign(0.195) TCGA-38-4628-01 1 157666998 157666998 C T FCRL3 Nonsense_Mutation p.W259* 0.12 TCGA-38-4628-01 1 171293296 171293296 C T FMO4 Missense_Mutation p.T114M 0.20 deleterious(0.01) benign(0.249) TCGA-38-4628-01 1 192778178 192778178 C A RGS2 5'UTR 0.21 TCGA-38-4628-01 1 1961436 1961436 C T GABRD Silent p.N358N 0.13 TCGA-38-4628-01 1 196977743 196977743 C A CFHR5 Missense_Mutation p.A547E 0.07 tolerated(0.72) benign(0.123) TCGA-38-4628-01 1 203316507 203316507 G T FMOD Missense_Mutation p.L298I 0.29 deleterious(0) probably_damaging(0.999) TCGA-38-4628-01 1 215259842 215259842 A T KCNK2 Nonsense_Mutation p.K60* 0.56 TCGA-38-4628-01 1 240371640 240371640 G A FMN2 Silent p.P1176P 0.39 TCGA-38-4628-01 1 32667694 32667694 T C CCDC28B Missense_Mutation p.F53S 0.20 tolerated(0.38) benign(0.038) TCGA-38-4628-01 1 38082223 38082223 G A RSPO1 Silent p.G73G 0.09 TCGA-38-4628-01 1 94342445 94342445 G A DNTTIP2 Missense_Mutation p.S349L 0.15 tolerated(0.25) benign(0.063) TCGA-38-4628-01 20 32440005 32440005 A G CHMP4B Silent p.K202K 0.18 TCGA-38-4628-01 20 57768042 57768042 G T ZNF831 Silent p.L656L 0.10 TCGA-38-4628-01 20 61990970 61990970 C T CHRNA4 Missense_Mutation p.R53Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-38-4628-01 21 27852642 27852642 G A CYYR1 Missense_Mutation p.R95C 0.19 deleterious(0) probably_damaging(0.995) TCGA-38-4628-01 21 30378852 30378852 G T RWDD2B Missense_Mutation p.F282L 0.11 deleterious(0.03) possibly_damaging(0.464) TCGA-38-4628-01 21 45821603 45821603 C T TRPM2 Silent p.R787R 0.08 TCGA-38-4628-01 21 47610986 47610986 G A LSS 3'UTR 0.22 TCGA-38-4628-01 22 36678579 36678579 G C MYH9 3'UTR 0.43 TCGA-38-4628-01 22 38824024 38824024 C T KCNJ4 Silent p.K38K 0.41 TCGA-38-4628-01 22 50875986 50875986 T G PPP6R2 Missense_Mutation p.F553V 0.29 deleterious(0.01) probably_damaging(1) TCGA-38-4628-01 2 179592019 179592019 T A TTN Silent p.I6691I 0.21 TCGA-38-4628-01 2 180307910 180307910 T C ZNF385B 3'UTR 0.17 TCGA-38-4628-01 2 217285083 217285083 C G SMARCAL1 Missense_Mutation p.S308R 0.08 tolerated(0.47) benign(0.006) TCGA-38-4628-01 2 233757737 233757737 C T NGEF Missense_Mutation p.R338Q 0.26 deleterious(0) probably_damaging(0.987) TCGA-38-4628-01 2 28531273 28531273 C G BRE Intron 0.16 TCGA-38-4628-01 2 71036905 71036905 C G CLEC4F Missense_Mutation p.D542H 0.33 deleterious(0) probably_damaging(0.989) TCGA-38-4628-01 2 89512978 89512978 G T IGKV1-27 Missense_Mutation p.T94N 0.12 deleterious(0) probably_damaging(0.927) TCGA-38-4628-01 3 112068659 112068659 G C CD200 Missense_Mutation p.Q290H 0.24 deleterious(0) probably_damaging(0.999) TCGA-38-4628-01 3 122446793 122446793 C T PARP14 Silent p.V1692V 0.69 TCGA-38-4628-01 3 148903209 148903209 G A CP Missense_Mutation p.T701I 0.37 deleterious(0) possibly_damaging(0.892) TCGA-38-4628-01 3 151155695 151155695 G A IGSF10 Silent p.P2218P 0.29 TCGA-38-4628-01 3 183476724 183476724 G A YEATS2 Missense_Mutation p.G543R 0.27 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-38-4628-01 3 52492774 52492774 C A NISCH Missense_Mutation p.L92M 0.10 deleterious(0) probably_damaging(0.997) TCGA-38-4628-01 3 53222799 53222799 G A PRKCD Silent p.G493G 0.07 TCGA-38-4628-01 3 96706597 96706597 G A EPHA6 Missense_Mutation p.V292I 0.07 tolerated(0.29) probably_damaging(0.995) TCGA-38-4628-01 4 38829252 38829252 G C TLR6 Missense_Mutation p.L615V 0.09 tolerated(0.18) benign(0.071) TCGA-38-4628-01 4 57889908 57889908 T C POLR2B Silent p.Y949Y 0.35 TCGA-38-4628-01 5 126676236 126676236 C A MEGF10 Missense_Mutation p.T78K 0.16 deleterious(0.03) possibly_damaging(0.833) TCGA-38-4628-01 5 13776694 13776694 C A DNAH5 Missense_Mutation p.S3076I 0.19 possibly_damaging(0.727) TCGA-38-4628-01 5 140214302 140214302 A T PCDHA7 Missense_Mutation p.R112W 0.11 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-38-4628-01 5 140346470 140346470 C A PCDHAC2 Missense_Mutation p.A40E 0.33 deleterious(0.03) benign(0.002) TCGA-38-4628-01 5 147782066 147782066 A G FBXO38 Silent p.L194L 0.29 TCGA-38-4628-01 5 15928521 15928521 T G FBXL7 Missense_Mutation p.L217R 0.21 deleterious(0) probably_damaging(0.996) TCGA-38-4628-01 5 170319516 170319516 G A RANBP17 Missense_Mutation p.V128I 0.28 tolerated(0.46) benign(0.001) TCGA-38-4628-01 6 160218467 160218467 C T MRPL18 Nonsense_Mutation p.R130* 0.21 TCGA-38-4628-01 6 25665258 25665258 C G SCGN Missense_Mutation p.Q112E 0.09 tolerated(0.59) benign(0.01) TCGA-38-4628-01 6 26027259 26027267 CGTGTAGGT - HIST1H4B In_Frame_Del p.T72_T74del 0.17 TCGA-38-4628-01 6 31612875 31612875 G C BAG6 Missense_Mutation p.S412C 0.11 deleterious(0.02) benign(0.299) TCGA-38-4628-01 6 99848691 99848691 G A PNISR Nonsense_Mutation p.R715* 0.09 TCGA-38-4628-01 7 107615484 107615484 C T LAMB1 Missense_Mutation p.G477S 0.46 deleterious(0) probably_damaging(1) TCGA-38-4628-01 7 122342609 122342609 A T RNF148 Missense_Mutation p.S66T 0.13 deleterious(0) probably_damaging(0.932) TCGA-38-4628-01 7 138957090 138957090 T C UBN2 Missense_Mutation p.L540P 0.17 deleterious(0) probably_damaging(0.998) TCGA-38-4628-01 7 21784217 21784217 A T DNAH11 Missense_Mutation p.E2779D 0.11 possibly_damaging(0.61) TCGA-38-4628-01 7 38370452 38370452 G A TRGV8 5'UTR 0.19 TCGA-38-4628-01 7 47917203 47917203 C G PKD1L1 Missense_Mutation p.A1183P 0.07 deleterious(0) probably_damaging(0.977) TCGA-38-4628-01 7 55242465 55242479 GGAATTAAGAGAAGC - EGFR In_Frame_Del p.E746_A750del 0.37 TCGA-38-4628-01 7 76026893 76026893 G A SRCRB4D Silent p.S270S 0.39 TCGA-38-4628-01 7 84702345 84702345 A C SEMA3D Missense_Mutation p.I143R 0.24 deleterious(0) benign(0.15) TCGA-38-4628-01 7 88966114 88966114 C T ZNF804B Missense_Mutation p.A1273V 0.24 deleterious(0) possibly_damaging(0.798) TCGA-38-4628-01 7 901102 901102 G A SUN1 Splice_Site p.X622_splice 0.42 TCGA-38-4628-01 8 105263321 105263321 G T RIMS2 Missense_Mutation p.R1254I 0.80 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-38-4628-01 8 62212353 62212353 G A CLVS1 5'UTR 0.09 TCGA-38-4628-01 8 62289222 62289222 G T CLVS1 Missense_Mutation p.D172Y 0.12 deleterious(0) probably_damaging(0.992) TCGA-38-4628-01 9 122000956 122000956 G A BRINP1 Missense_Mutation p.T221M 0.33 deleterious(0.04) benign(0.002) TCGA-38-4628-01 9 139571071 139571073 TTA AT AGPAT2 Frame_Shift_Del p.F184Lfs*2 0.23 TCGA-38-4628-01 9 79324375 79324375 C A PRUNE2 Missense_Mutation p.D939Y 0.36 deleterious(0) probably_damaging(0.996) TCGA-38-4628-01 X 105011610 105011610 C A IL1RAPL2 Missense_Mutation p.P673T 0.11 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-38-4628-01 X 123019496 123019496 C G XIAP 5'UTR 0.06 TCGA-38-4628-01 X 138708867 138708867 G T MCF2 Missense_Mutation p.L223M 0.10 deleterious(0.03) possibly_damaging(0.644) TCGA-38-4628-01 X 153668809 153668809 A T GDI1 Missense_Mutation p.L225F 0.20 deleterious(0) probably_damaging(0.998) TCGA-38-4628-01 X 21861374 21861374 T A MBTPS2 Silent p.T54T 0.15 TCGA-38-4628-01 X 37651312 37651312 G C CYBB Missense_Mutation p.A113P 0.11 deleterious(0.01) possibly_damaging(0.721) TCGA-38-4628-01 X 47919181 47919181 G T ZNF630 Missense_Mutation p.A217D 0.08 tolerated(0.28) benign(0.003) TCGA-38-4628-01 X 63488494 63488494 C T MTMR8 Missense_Mutation p.G680R 0.31 deleterious_low_confidence(0) benign(0.011) TCGA-38-4628-01 X 69563564 69563564 G A KIF4A Silent p.A426A 0.12 TCGA-38-4628-01 X 70288110 70288110 G A SNX12 Missense_Mutation p.P16L 0.12 deleterious(0.02) benign(0.267) TCGA-38-4628-01 X 79286464 79286464 G A TBX22 Missense_Mutation p.D473N 0.09 tolerated(0.11) benign(0.035) TCGA-38-4628-01 X 84526697 84526697 T A ZNF711 Missense_Mutation p.S717T 0.12 deleterious(0) probably_damaging(0.993) TCGA-38-4628-01 X 99942191 99942191 T A SYTL4 Missense_Mutation p.N353Y 0.13 deleterious(0) probably_damaging(0.935) TCGA-38-4629-01 10 103826164 103826164 G C HPS6 Silent p.P311P 0.31 TCGA-38-4629-01 10 103826182 103826182 A G HPS6 Silent p.L317L 0.30 TCGA-38-4629-01 10 119307833 119307833 C T EMX2 3'UTR 0.21 TCGA-38-4629-01 10 11978664 11978664 A C UPF2 Missense_Mutation p.I1142M 0.30 deleterious(0) probably_damaging(0.98) TCGA-38-4629-01 10 20290768 20290768 C A PLXDC2 Missense_Mutation p.H59Q 0.10 tolerated_low_confidence(0.17) benign(0.002) TCGA-38-4629-01 10 25886786 25886786 G A GPR158 Missense_Mutation p.R744Q 0.11 deleterious(0) probably_damaging(0.921) TCGA-38-4629-01 10 3821782 3821782 C T KLF6 Silent p.R267R 0.16 TCGA-38-4629-01 10 48381910 48381910 G A RBP3 Silent p.L1247L 0.24 TCGA-38-4629-01 10 50863273 50863273 T A CHAT Silent p.A589A 0.29 TCGA-38-4629-01 10 50964932 50964932 G T OGDHL Silent p.R89R 0.24 TCGA-38-4629-01 10 51768999 51768999 G A AGAP6 Missense_Mutation p.G372S 0.31 tolerated(0.17) benign(0.173) TCGA-38-4629-01 10 52390540 52390540 C A RP11-50E11.3 RNA 0.35 TCGA-38-4629-01 10 6262674 6262674 G T PFKFB3 Missense_Mutation p.R226L 0.25 possibly_damaging(0.512) TCGA-38-4629-01 10 79773475 79773475 C A POLR3A Missense_Mutation p.G502V 0.15 deleterious(0) probably_damaging(0.984) TCGA-38-4629-01 10 88769446 88769446 G A RP11-96C23.10 3'Flank 0.31 TCGA-38-4629-01 10 98146791 98146791 G T TLL2 Missense_Mutation p.R591S 0.35 tolerated(0.17) benign(0.248) TCGA-38-4629-01 10 98766421 98766421 C A SLIT1 Missense_Mutation p.G1133V 0.49 tolerated(0.43) benign(0.012) TCGA-38-4629-01 11 103814199 103814199 G A PDGFD Silent p.Y251Y 0.12 TCGA-38-4629-01 11 105732855 105732855 T C GRIA4 Missense_Mutation p.L198P 0.28 deleterious(0) probably_damaging(0.982) TCGA-38-4629-01 11 113266799 113266799 G T ANKK1 Missense_Mutation p.M231I 0.19 tolerated(0.14) benign(0.082) TCGA-38-4629-01 11 114441716 114441716 G T NXPE4 Missense_Mutation p.P527T 0.20 deleterious(0.02) probably_damaging(0.984) TCGA-38-4629-01 11 119996524 119996524 T A TRIM29 Missense_Mutation p.E403V 0.16 deleterious(0) possibly_damaging(0.461) TCGA-38-4629-01 11 121008270 121008270 A T TECTA Missense_Mutation p.S1028C 0.27 deleterious(0.02) possibly_damaging(0.612) TCGA-38-4629-01 11 122680631 122680631 G T UBASH3B 3'UTR 0.16 TCGA-38-4629-01 11 124742335 124742335 G T ROBO3 Missense_Mutation p.R406I 0.40 deleterious(0.02) possibly_damaging(0.702) TCGA-38-4629-01 11 134095109 134095109 C T VPS26B Silent p.D31D 0.16 TCGA-38-4629-01 11 134131236 134131236 G C ACAD8 Missense_Mutation p.K303N 0.10 deleterious(0.04) possibly_damaging(0.547) TCGA-38-4629-01 11 134217327 134217327 G A GLB1L2 Silent p.Q186Q 0.06 TCGA-38-4629-01 11 33047270 33047270 C G DEPDC7 Missense_Mutation p.Q47E 0.37 deleterious(0.02) benign(0.066) TCGA-38-4629-01 11 4869784 4869784 G - OR51S1 Frame_Shift_Del p.L219Cfs*9 0.24 TCGA-38-4629-01 11 49974153 49974153 T C OR4C13 Missense_Mutation p.F60S 0.13 deleterious_low_confidence(0.01) benign(0.244) TCGA-38-4629-01 11 5290732 5290732 C T HBE1 Silent p.L89L 0.26 TCGA-38-4629-01 11 55036743 55036743 C A TRIM48 Missense_Mutation p.P202T 0.15 tolerated(0.06) possibly_damaging(0.74) TCGA-38-4629-01 11 5530631 5530631 C T UBQLN3 Missense_Mutation p.R53H 0.33 deleterious(0.03) probably_damaging(1) TCGA-38-4629-01 11 55418741 55418741 A T OR4S2 Missense_Mutation p.Y121F 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-38-4629-01 11 55579095 55579095 C A OR5L1 Silent p.V51V 0.27 TCGA-38-4629-01 11 55872729 55872729 G T OR8H2 Missense_Mutation p.D71Y 0.21 deleterious(0) probably_damaging(0.948) TCGA-38-4629-01 11 55873168 55873168 C A OR8H2 Missense_Mutation p.S217Y 0.26 deleterious(0.01) probably_damaging(1) TCGA-38-4629-01 11 55890059 55890059 G T OR8H3 Missense_Mutation p.D71Y 0.08 deleterious(0) probably_damaging(0.948) TCGA-38-4629-01 11 57971146 57971146 G T OR1S2 Missense_Mutation p.L170I 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-38-4629-01 11 58169967 58169967 C A OR5B3 Missense_Mutation p.A306S 0.13 tolerated_low_confidence(0.15) benign(0.031) TCGA-38-4629-01 11 59189984 59189984 C G OR5A2 Missense_Mutation p.G148A 0.26 tolerated(0.09) benign(0.381) TCGA-38-4629-01 11 62297219 62297219 G C AHNAK Missense_Mutation p.A1557G 0.25 benign(0.002) TCGA-38-4629-01 11 64111949 64111949 C T CCDC88B Missense_Mutation p.P646S 0.25 tolerated_low_confidence(0.07) benign(0.043) TCGA-38-4629-01 11 64428366 64428366 C T NRXN2 Missense_Mutation p.V682I 0.24 tolerated(0.4) benign(0.007) TCGA-38-4629-01 11 64519396 64519396 G T PYGM Missense_Mutation p.R590S 0.18 deleterious(0.03) possibly_damaging(0.463) TCGA-38-4629-01 11 6640644 6640644 C A TPP1 5'UTR 0.32 TCGA-38-4629-01 11 66475714 66475714 C T SPTBN2 Silent p.E416E 0.25 TCGA-38-4629-01 11 70282477 70282477 G T CTTN Missense_Mutation p.W623L 0.32 deleterious_low_confidence(0) benign(0.001) TCGA-38-4629-01 11 76834862 76834862 G A CAPN5 Silent p.L623L 0.22 TCGA-38-4629-01 11 76900500 76900500 C T MYO7A Silent p.S1205S 0.05 TCGA-38-4629-01 11 7960723 7960723 C T OR10A3 Silent p.L115L 0.38 TCGA-38-4629-01 12 104099502 104099502 C T STAB2 Silent p.V1331V 0.31 TCGA-38-4629-01 12 105589110 105589110 C G APPL2 Missense_Mutation p.L396F 0.40 deleterious(0.01) probably_damaging(0.935) TCGA-38-4629-01 12 107114570 107114570 G A RFX4 Missense_Mutation p.V432M 0.42 tolerated(0.1) possibly_damaging(0.693) TCGA-38-4629-01 12 108603914 108603914 G - WSCD2 Frame_Shift_Del p.L173Wfs*18 0.32 TCGA-38-4629-01 12 115120648 115120648 C A TBX3 Missense_Mutation p.G120C 0.17 deleterious(0) probably_damaging(1) TCGA-38-4629-01 12 123089424 123089424 G T KNTC1 Missense_Mutation p.D1726Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-38-4629-01 12 132636667 132636667 C T NOC4L Silent p.A452A 0.36 TCGA-38-4629-01 12 132636668 132636668 G T NOC4L Missense_Mutation p.A453S 0.36 tolerated(0.08) possibly_damaging(0.889) TCGA-38-4629-01 12 2666138 2666138 G T CACNA1C Missense_Mutation p.K501N 0.36 deleterious(0.04) benign(0.219) TCGA-38-4629-01 12 2788840 2788840 C A CACNA1C Silent p.A1822A 0.35 TCGA-38-4629-01 12 40618848 40618848 G A LRRK2 5'Flank 0.43 TCGA-38-4629-01 12 51685752 51685776 GCTGCCCTGAAGGGCTCAGGGCTCC - BIN2 Frame_Shift_Del p.G372Lfs*8 0.38 TCGA-38-4629-01 12 56563453 56563453 T G SMARCC2 Missense_Mutation p.K828Q 0.33 tolerated(0.13) benign(0.403) TCGA-38-4629-01 12 72008410 72008410 C T ZFC3H1 Missense_Mutation p.D1811N 0.40 deleterious(0.03) probably_damaging(0.996) TCGA-38-4629-01 12 80752460 80752460 C G OTOGL Missense_Mutation p.P2035R 0.29 tolerated(0.4) benign(0.145) TCGA-38-4629-01 12 81545819 81545819 C A ACSS3 Missense_Mutation p.H348N 0.41 deleterious(0) probably_damaging(0.927) TCGA-38-4629-01 12 89997942 89997942 C A ATP2B1 Missense_Mutation p.C875F 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-38-4629-01 12 9906180 9906180 T C CD69 Missense_Mutation p.N166S 0.06 tolerated(0.53) benign(0.037) TCGA-38-4629-01 13 101936320 101936320 G C NALCN Silent p.V366V 0.21 TCGA-38-4629-01 13 111274657 111274657 T A CARKD Silent p.S65S 0.20 TCGA-38-4629-01 13 25265298 25265298 G T ATP12A Silent p.V332V 0.25 TCGA-38-4629-01 13 25285542 25285542 C A ATP12A Missense_Mutation p.P1035H 0.21 deleterious(0.01) probably_damaging(0.983) TCGA-38-4629-01 13 27333929 27333929 C A GPR12 Silent p.L12L 0.23 TCGA-38-4629-01 13 29598882 29598882 G A MTUS2 Missense_Mutation p.R26Q 0.31 tolerated(1) benign(0.016) TCGA-38-4629-01 13 38320578 38320578 G T TRPC4 Silent p.L131L 0.27 TCGA-38-4629-01 13 39455020 39455020 T A FREM2 3'UTR 0.45 TCGA-38-4629-01 13 39455021 39455021 G T FREM2 3'UTR 0.45 TCGA-38-4629-01 13 46946499 46946499 G A KIAA0226L Missense_Mutation p.P38S 0.23 tolerated(0.39) benign(0.015) TCGA-38-4629-01 13 67801090 67801090 C T PCDH9 Missense_Mutation p.D495N 0.10 deleterious(0) probably_damaging(1) TCGA-38-4629-01 13 84455614 84455614 G T SLITRK1 Missense_Mutation p.T10K 0.21 tolerated(0.1) benign(0.021) TCGA-38-4629-01 14 106757685 106757685 G T IGHV2-26 Missense_Mutation p.P108T 0.23 tolerated(1) benign(0.026) TCGA-38-4629-01 14 107170344 107170344 G A IGHV1-69 Silent p.L8L 0.19 TCGA-38-4629-01 14 20248603 20248603 G C OR4M1 Missense_Mutation p.G41A 0.17 deleterious(0.04) benign(0.046) TCGA-38-4629-01 14 20859920 20859920 C T TEP1 Nonsense_Mutation p.W645* 0.28 TCGA-38-4629-01 14 20944820 20944820 G A PNP 3'UTR 0.24 TCGA-38-4629-01 14 23858607 23858607 C T MYH6 Missense_Mutation p.G1325S 0.21 tolerated(0.83) benign(0.002) TCGA-38-4629-01 14 24839463 24839463 C A NFATC4 Missense_Mutation p.R350S 0.30 deleterious(0.04) probably_damaging(0.999) TCGA-38-4629-01 14 36217805 36217805 C A RALGAPA1 Nonsense_Mutation p.E413* 0.32 TCGA-38-4629-01 14 39716257 39716257 A G MIA2 Missense_Mutation p.Q160R 0.23 tolerated(0.1) possibly_damaging(0.903) TCGA-38-4629-01 14 52493964 52493964 A C NID2 Missense_Mutation p.C877G 0.19 deleterious(0.02) probably_damaging(0.99) TCGA-38-4629-01 14 63863343 63863343 C A PPP2R5E Missense_Mutation p.R214I 0.24 deleterious(0) probably_damaging(0.993) TCGA-38-4629-01 14 72200383 72200383 G C SIPA1L1 Missense_Mutation p.G1642A 0.17 tolerated(0.13) possibly_damaging(0.506) TCGA-38-4629-01 14 77297578 77297578 G C C14orf166B Missense_Mutation p.E84Q 0.17 deleterious(0.02) benign(0.285) TCGA-38-4629-01 14 77808117 77808117 G C TMED8 Missense_Mutation p.S325R 0.07 deleterious(0) probably_damaging(0.999) TCGA-38-4629-01 14 89061323 89061323 G T ZC3H14 Intron 0.15 TCGA-38-4629-01 14 96137713 96137713 C T TCL6 RNA 0.10 TCGA-38-4629-01 15 23931842 23931842 C G NDN Missense_Mutation p.E175Q 0.42 deleterious(0.04) probably_damaging(0.914) TCGA-38-4629-01 15 28459892 28459892 C A HERC2 Missense_Mutation p.R2089S 0.27 benign(0.164) TCGA-38-4629-01 15 31294908 31294908 T C TRPM1 Missense_Mutation p.K1349R 0.37 tolerated(0.28) benign(0.004) TCGA-38-4629-01 15 31354818 31354818 A C TRPM1 Missense_Mutation p.F368L 0.19 tolerated(0.21) benign(0.001) TCGA-38-4629-01 15 35240533 35240533 T C AQR Missense_Mutation p.K88E 0.37 tolerated(1) benign(0.007) TCGA-38-4629-01 15 49304865 49304865 G A SECISBP2L Nonsense_Mutation p.R571* 0.07 TCGA-38-4629-01 15 62989999 62989999 G T TLN2 Missense_Mutation p.G469C 0.34 deleterious(0) probably_damaging(0.971) TCGA-38-4629-01 15 62990000 62990000 G T TLN2 Missense_Mutation p.G469V 0.34 deleterious(0.03) possibly_damaging(0.54) TCGA-38-4629-01 15 67713788 67713788 C T IQCH Missense_Mutation p.S793L 0.38 deleterious(0) probably_damaging(0.999) TCGA-38-4629-01 15 73617717 73617717 G T HCN4 Missense_Mutation p.D553E 0.37 tolerated(0.25) unknown(0) TCGA-38-4629-01 15 83791516 83791516 T A TM6SF1 Nonsense_Mutation p.Y163* 0.31 TCGA-38-4629-01 15 99459900 99459900 G T IGF1R Splice_Site p.X666_splice 0.42 TCGA-38-4629-01 16 11362767 11362768 - T TNP2 Frame_Shift_Ins p.M118Nfs*43 0.08 TCGA-38-4629-01 16 1394115 1394115 C A BAIAP3 Missense_Mutation p.S528R 0.16 tolerated(0.28) benign(0.323) TCGA-38-4629-01 16 2278460 2278460 G T E4F1 Missense_Mutation p.C82F 0.29 deleterious(0) probably_damaging(1) TCGA-38-4629-01 16 3071600 3071600 C T TNFRSF12A Missense_Mutation p.L82F 0.13 tolerated(0.06) probably_damaging(1) TCGA-38-4629-01 16 31476451 31476451 A T ARMC5 Intron 0.21 TCGA-38-4629-01 16 3299678 3299678 A C MEFV Missense_Mutation p.V338G 0.32 tolerated(0.44) benign(0.001) TCGA-38-4629-01 16 3339736 3339736 C T ZNF263 Silent p.D410D 0.25 TCGA-38-4629-01 16 3544801 3544801 G A C16orf90 Silent p.S41S 0.19 TCGA-38-4629-01 16 4855202 4855202 G A GLYR1 3'UTR 0.44 TCGA-38-4629-01 16 49670145 49670145 G A ZNF423 Missense_Mutation p.T973M 0.16 deleterious(0.02) probably_damaging(0.981) TCGA-38-4629-01 16 55539369 55539369 C T MMP2 3'UTR 0.16 TCGA-38-4629-01 16 55907857 55907857 C A CES5A Missense_Mutation p.V85L 0.19 deleterious(0) possibly_damaging(0.69) TCGA-38-4629-01 16 65022153 65022153 T A CDH11 Missense_Mutation p.L302F 0.30 deleterious(0) possibly_damaging(0.544) TCGA-38-4629-01 16 66432427 66432427 G A CDH5 Silent p.L518L 0.10 TCGA-38-4629-01 16 67913844 67913844 G A EDC4 Missense_Mutation p.S638N 0.22 tolerated(0.13) benign(0.043) TCGA-38-4629-01 16 70172802 70172802 G T PDPR Missense_Mutation p.K397N 0.11 tolerated(0.06) benign(0.036) TCGA-38-4629-01 16 74972108 74972108 C A WDR59 Silent p.L197L 0.28 TCGA-38-4629-01 16 76528859 76528859 C A CNTNAP4 Nonsense_Mutation p.Y638* 0.37 TCGA-38-4629-01 17 10358324 10358324 G A MYH4 Missense_Mutation p.T790M 0.43 deleterious(0.01) probably_damaging(0.947) TCGA-38-4629-01 17 12639576 12639576 C A MYOCD Missense_Mutation p.P172T 0.31 tolerated(0.1) benign(0.138) TCGA-38-4629-01 17 16527049 16527049 C T ZNF624 Missense_Mutation p.G384E 0.30 deleterious(0) possibly_damaging(0.746) TCGA-38-4629-01 17 17701269 17701269 G A RAI1 Silent p.T1669T 0.12 TCGA-38-4629-01 17 18022483 18022483 C T MYO15A Silent p.R123R 0.24 TCGA-38-4629-01 17 29560147 29560147 G T NF1 Missense_Mutation p.L1208F 0.22 deleterious(0) probably_damaging(0.986) TCGA-38-4629-01 17 37868201 37868201 G A ERBB2 Missense_Mutation p.V308M 0.06 tolerated(0.22) possibly_damaging(0.825) TCGA-38-4629-01 17 39742587 39742587 T C KRT14 Missense_Mutation p.K167R 0.26 tolerated(0.37) benign(0.02) TCGA-38-4629-01 17 40312060 40312060 A T KCNH4 Nonstop_Mutation p.*1018Rext*53 0.22 TCGA-38-4629-01 17 41958710 41958710 T C MPP2 Missense_Mutation p.H274R 0.27 tolerated(0.21) benign(0.132) TCGA-38-4629-01 17 47122386 47122386 C G IGF2BP1 Missense_Mutation p.R452G 0.29 deleterious(0.02) probably_damaging(0.987) TCGA-38-4629-01 17 50212395 50212395 C T CA10 Intron 0.24 TCGA-38-4629-01 17 5085737 5085737 G A ZNF594 Silent p.F605F 0.32 TCGA-38-4629-01 17 53237247 53237247 G C STXBP4 Missense_Mutation p.R546T 0.07 tolerated(0.1) possibly_damaging(0.632) TCGA-38-4629-01 17 56270748 56270748 C T EPX Missense_Mutation p.R63C 0.10 deleterious(0) possibly_damaging(0.587) TCGA-38-4629-01 17 56439904 56439904 C G RNF43 Splice_Site p.X229_splice 0.21 TCGA-38-4629-01 17 57992021 57992021 G C RPS6KB1 Missense_Mutation p.G113A 0.25 deleterious(0) possibly_damaging(0.524) TCGA-38-4629-01 17 60346360 60346360 G C TBC1D3P2 RNA 0.28 TCGA-38-4629-01 17 64873625 64873625 T A CACNG5 Missense_Mutation p.W59R 0.28 deleterious(0) probably_damaging(0.998) TCGA-38-4629-01 17 7416687 7416687 A T POLR2A Missense_Mutation p.T1702S 0.44 unknown(0) TCGA-38-4629-01 17 7578246 7578247 - A TP53 Frame_Shift_Ins p.L201Ffs*8 0.33 TCGA-38-4629-01 17 80046702 80046702 C T FASN Missense_Mutation p.M785I 0.19 deleterious(0) possibly_damaging(0.72) TCGA-38-4629-01 17 9801290 9801290 C T RCVRN 3'UTR 0.36 TCGA-38-4629-01 18 10672737 10672737 G C PIEZO2 Silent p.V2652V 0.24 TCGA-38-4629-01 18 22807089 22807089 T A ZNF521 Missense_Mutation p.I265F 0.31 deleterious(0.01) probably_damaging(0.96) TCGA-38-4629-01 18 23873416 23873416 C T TAF4B Missense_Mutation p.P585S 0.25 deleterious(0.02) possibly_damaging(0.619) TCGA-38-4629-01 18 43405605 43405605 G A SIGLEC15 5'UTR 0.24 TCGA-38-4629-01 18 70502465 70502465 C T NETO1 Intron 0.47 TCGA-38-4629-01 19 11169547 11169547 C T SMARCA4 Silent p.F1539F 0.35 TCGA-38-4629-01 19 12502033 12502033 G A ZNF799 Silent p.H393H 0.37 TCGA-38-4629-01 19 14876595 14876595 C G EMR2 Missense_Mutation p.G219A 0.23 deleterious(0.02) possibly_damaging(0.66) TCGA-38-4629-01 19 16631280 16631280 C T CHERP Missense_Mutation p.G747E 0.09 tolerated(0.22) benign(0) TCGA-38-4629-01 19 46095096 46095096 T G GPR4 Missense_Mutation p.H10P 0.38 tolerated(0.32) benign(0.184) TCGA-38-4629-01 19 46506741 46506741 G T CCDC61 Silent p.L71L 0.30 TCGA-38-4629-01 19 49223990 49223990 G A RASIP1 3'UTR 0.37 TCGA-38-4629-01 19 51021452 51021452 C T LRRC4B Silent p.P506P 0.53 TCGA-38-4629-01 19 53007912 53007912 G T ZNF578 Missense_Mutation p.R23L 0.26 tolerated(0.75) benign(0.34) TCGA-38-4629-01 19 55341916 55341916 T A KIR3DL1 3'UTR 0.42 TCGA-38-4629-01 19 57325767 57325767 G A PEG3 Missense_Mutation p.T1348I 0.26 tolerated(0.07) benign(0.314) TCGA-38-4629-01 19 57640928 57640928 C A USP29 Nonsense_Mutation p.Y295* 0.31 TCGA-38-4629-01 19 57932863 57932863 A G ZNF17 3'UTR 0.41 TCGA-38-4629-01 19 8807981 8807981 C G ACTL9 Missense_Mutation p.E357D 0.40 tolerated(0.05) benign(0.064) TCGA-38-4629-01 1 103481273 103481273 G T COL11A1 Missense_Mutation p.P480Q 0.50 probably_damaging(1) TCGA-38-4629-01 1 114309076 114309076 C T RSBN1 Splice_Site p.X646_splice 0.44 TCGA-38-4629-01 1 119575582 119575582 T C WARS2 Silent p.L345L 0.28 TCGA-38-4629-01 1 1247190 1247190 C T CPSF3L 3'UTR 0.14 TCGA-38-4629-01 1 145533105 145533105 G A ITGA10 Silent p.V400V 0.26 TCGA-38-4629-01 1 145609339 145609339 T C POLR3C 5'UTR 0.25 TCGA-38-4629-01 1 149857805 149857805 G T HIST2H2BE 3'UTR 0.36 TCGA-38-4629-01 1 149881043 149881043 C A SV2A Missense_Mutation p.W420C 0.29 tolerated(0.4) probably_damaging(0.967) TCGA-38-4629-01 1 149919162 149919162 G A OTUD7B Missense_Mutation p.S438F 0.23 deleterious(0.02) benign(0.002) TCGA-38-4629-01 1 150321643 150321643 G T PRPF3 Missense_Mutation p.E618D 0.19 tolerated(0.54) benign(0.009) TCGA-38-4629-01 1 152192637 152192637 C T HRNR Missense_Mutation p.G490S 0.16 unknown(0) TCGA-38-4629-01 1 152944454 152944454 C - SPRR4 Frame_Shift_Del p.P31Lfs*79 0.37 TCGA-38-4629-01 1 154155629 154155629 C G TPM3 Intron 0.10 TCGA-38-4629-01 1 158725087 158725087 C A OR6K6 Missense_Mutation p.P161Q 0.20 tolerated(0.13) benign(0.052) TCGA-38-4629-01 1 176837984 176837984 G T ASTN1 Missense_Mutation p.P1215T 0.17 deleterious(0) probably_damaging(0.982) TCGA-38-4629-01 1 183099666 183099666 A C LAMC1 Missense_Mutation p.K1156N 0.18 tolerated(0.24) benign(0.294) TCGA-38-4629-01 1 196309547 196309547 C T KCNT2 Silent p.Q569Q 0.18 TCGA-38-4629-01 1 201969089 201969089 G T RNPEP Missense_Mutation p.D384Y 0.18 deleterious(0) probably_damaging(0.926) TCGA-38-4629-01 1 215781360 215781374 CTGTGCAGATAATAA - KCTD3 In_Frame_Del p.C438_N442del 0.15 TCGA-38-4629-01 1 227920042 227920042 G A JMJD4 3'UTR 0.23 TCGA-38-4629-01 1 236732404 236732404 G C HEATR1 Missense_Mutation p.I1323M 0.12 deleterious(0) possibly_damaging(0.86) TCGA-38-4629-01 1 240255649 240255649 C G FMN2 Missense_Mutation p.I80M 0.33 unknown(0) TCGA-38-4629-01 1 24400733 24400733 C A MYOM3 Missense_Mutation p.G962V 0.32 deleterious(0.01) benign(0.131) TCGA-38-4629-01 1 247267335 247267335 C T ZNF669 Missense_Mutation p.G56E 0.17 tolerated_low_confidence(0.14) benign(0.025) TCGA-38-4629-01 1 248084397 248084397 C A OR2T8 Missense_Mutation p.F26L 0.26 deleterious(0.02) possibly_damaging(0.86) TCGA-38-4629-01 1 248112550 248112550 T A OR2L8 Missense_Mutation p.Y131N 0.16 deleterious(0.01) possibly_damaging(0.888) TCGA-38-4629-01 1 248436673 248436673 G A OR2T33 Silent p.L148L 0.16 TCGA-38-4629-01 1 248637546 248637546 A C OR2T3 Missense_Mutation p.N299H 0.15 deleterious(0) possibly_damaging(0.641) TCGA-38-4629-01 1 248813907 248813907 G T OR2T27 Silent p.S93S 0.13 TCGA-38-4629-01 1 249118957 249118957 T A SH3BP5L Missense_Mutation p.I60L 0.19 deleterious(0.02) probably_damaging(0.994) TCGA-38-4629-01 1 3390029 3390029 G A ARHGEF16 Missense_Mutation p.M416I 0.34 deleterious(0.02) possibly_damaging(0.734) TCGA-38-4629-01 1 44596259 44596259 T A KLF17 Missense_Mutation p.M334K 0.38 tolerated(0.58) benign(0.309) TCGA-38-4629-01 1 57489281 57489281 G T DAB1 Missense_Mutation p.P273Q 0.21 deleterious(0) benign(0.421) TCGA-38-4629-01 20 23472293 23472293 G A CST8 5'UTR 0.30 TCGA-38-4629-01 20 33330872 33330872 G A NCOA6 Missense_Mutation p.P1063L 0.26 benign(0.027) TCGA-38-4629-01 20 3672024 3672024 C A SIGLEC1 Silent p.G1518G 0.27 TCGA-38-4629-01 20 44313498 44313498 A T WFDC10B Missense_Mutation p.C81S 0.30 deleterious(0) probably_damaging(0.958) TCGA-38-4629-01 20 49575710 49575710 C G MOCS3 Missense_Mutation p.L111V 0.16 tolerated(0.1) possibly_damaging(0.679) TCGA-38-4629-01 20 50769377 50769377 C T ZFP64 Missense_Mutation p.E452K 0.10 tolerated(0.67) benign(0.011) TCGA-38-4629-01 20 62202177 62202177 G T HELZ2 Nonsense_Mutation p.S108* 0.21 TCGA-38-4629-01 20 8769149 8769149 G A PLCB1 Silent p.K1055K 0.26 TCGA-38-4629-01 21 27852651 27852651 T A CYYR1 Missense_Mutation p.R92W 0.19 deleterious(0.03) probably_damaging(0.995) TCGA-38-4629-01 21 31744152 31744152 A T KRTAP13-2 Missense_Mutation p.V127D 0.10 deleterious(0) benign(0.088) TCGA-38-4629-01 21 31914169 31914169 G A KRTAP19-6 5'UTR 0.17 TCGA-38-4629-01 21 38884551 38884551 C - DYRK1A Frame_Shift_Del p.S671Lfs*32 0.16 TCGA-38-4629-01 21 40186898 40186898 G A ETS2 Missense_Mutation p.M166I 0.22 deleterious(0.02) benign(0.11) TCGA-38-4629-01 21 45655295 45655295 T C ICOSLG Missense_Mutation p.N186S 0.06 deleterious(0.02) possibly_damaging(0.888) TCGA-38-4629-01 21 46021524 46021524 G A KRTAP10-7 Missense_Mutation p.A335T 0.06 deleterious(0.02) unknown(0) TCGA-38-4629-01 21 46067109 46067109 G C KRTAP10-11 Missense_Mutation p.C245S 0.17 deleterious(0) benign(0.415) TCGA-38-4629-01 21 46228916 46228916 C T SUMO3 Intron 0.22 TCGA-38-4629-01 22 18063888 18063888 C A SLC25A18 Missense_Mutation p.L36M 0.77 deleterious(0.03) probably_damaging(1) TCGA-38-4629-01 22 19136549 19136549 C T GSC2 Silent p.A191A 0.33 TCGA-38-4629-01 22 22453478 22453478 A G IGLV8-61 Missense_Mutation p.Y75C 0.44 deleterious(0.03) benign(0.229) TCGA-38-4629-01 22 26299684 26299684 G - MYO18B Frame_Shift_Del p.E1680Kfs*7 0.35 TCGA-38-4629-01 22 32334088 32334088 C T C22orf24 5'UTR 0.32 TCGA-38-4629-01 22 37771193 37771193 G - ELFN2 Frame_Shift_Del p.R128Afs*15 0.30 TCGA-38-4629-01 22 50956587 50956587 C T NCAPH2 Missense_Mutation p.R176W 0.29 deleterious(0) probably_damaging(0.996) TCGA-38-4629-01 2 100050907 100050907 T A REV1 Missense_Mutation p.K442I 0.43 deleterious(0) probably_damaging(0.988) TCGA-38-4629-01 2 108487260 108487260 G T RGPD4 Nonsense_Mutation p.E934* 0.04 TCGA-38-4629-01 2 11716647 11716647 G A GREB1 Missense_Mutation p.C208Y 0.06 deleterious(0) possibly_damaging(0.684) TCGA-38-4629-01 2 131520566 131520566 C T AMER3 Silent p.T307T 0.46 TCGA-38-4629-01 2 131521626 131521626 G A AMER3 Missense_Mutation p.G661S 0.39 tolerated(0.05) benign(0.4) TCGA-38-4629-01 2 166245809 166245809 A T SCN2A Silent p.I1831I 0.39 TCGA-38-4629-01 2 166245810 166245810 G T SCN2A Missense_Mutation p.A1832S 0.39 deleterious(0.01) possibly_damaging(0.542) TCGA-38-4629-01 2 169780250 169780250 G A ABCB11 Missense_Mutation p.A1283V 0.36 deleterious(0) possibly_damaging(0.471) TCGA-38-4629-01 2 179501461 179501462 - A TTN Frame_Shift_Ins p.G13665Wfs*6 0.22 TCGA-38-4629-01 2 200173488 200173488 C A SATB2 Missense_Mutation p.V579L 0.26 tolerated(1) benign(0.009) TCGA-38-4629-01 2 20131061 20131061 T A WDR35 Missense_Mutation p.Q989L 0.38 deleterious(0.04) probably_damaging(0.978) TCGA-38-4629-01 2 20647421 20647421 C T RHOB Silent p.D65D 0.38 TCGA-38-4629-01 2 214794784 214794784 G T SPAG16 Missense_Mutation p.V439L 0.11 deleterious(0.01) probably_damaging(0.957) TCGA-38-4629-01 2 220371440 220371440 G C GMPPA Missense_Mutation p.A395P 0.34 tolerated(0.38) benign(0.011) TCGA-38-4629-01 2 27259358 27259358 C G TMEM214 Missense_Mutation p.L242V 0.33 deleterious(0) possibly_damaging(0.874) TCGA-38-4629-01 2 27306318 27306318 G A EMILIN1 Missense_Mutation p.D627N 0.20 probably_damaging(0.998) TCGA-38-4629-01 2 44065024 44065024 C T ABCG5 Missense_Mutation p.V72I 0.35 tolerated(0.19) benign(0.115) TCGA-38-4629-01 2 86255764 86255764 G A POLR1A Missense_Mutation p.A1617V 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-38-4629-01 2 86459766 86459766 C G REEP1 Missense_Mutation p.E200Q 0.29 tolerated_low_confidence(0.06) benign(0.403) TCGA-38-4629-01 2 95941810 95941810 G A PROM2 Missense_Mutation p.E143K 0.09 tolerated(0.06) probably_damaging(0.942) TCGA-38-4629-01 3 101080669 101080669 C A SENP7 Nonsense_Mutation p.E505* 0.21 TCGA-38-4629-01 3 108353817 108353817 C T DZIP3 Nonsense_Mutation p.Q306* 0.30 TCGA-38-4629-01 3 157131778 157131778 T A VEPH1 Silent p.P266P 0.35 TCGA-38-4629-01 3 48719041 48719041 T C NCKIPSD Silent p.Q257Q 0.35 TCGA-38-4629-01 3 49329950 49329950 G T USP4 Missense_Mutation p.S655R 0.50 tolerated(0.48) benign(0.278) TCGA-38-4629-01 3 49692179 49692179 C G BSN Silent p.T1730T 0.36 TCGA-38-4629-01 3 52651531 52651531 C A PBRM1 Missense_Mutation p.R522L 0.32 deleterious(0.03) possibly_damaging(0.888) TCGA-38-4629-01 3 93593251 93593251 T A PROS1 Splice_Site p.X624_splice 0.30 TCGA-38-4629-01 4 106621161 106621161 A G INTS12 Translation_Start_Site p.M1? 0.31 deleterious_low_confidence(0) possibly_damaging(0.629) TCGA-38-4629-01 4 110739126 110739126 C G GAR1 Missense_Mutation p.D83E 0.24 tolerated(1) possibly_damaging(0.836) TCGA-38-4629-01 4 111539234 111539234 T A PITX2 3'UTR 0.24 TCGA-38-4629-01 4 114278296 114278296 G T ANK2 Missense_Mutation p.S2841I 0.24 benign(0.272) TCGA-38-4629-01 4 114279468 114279468 G C ANK2 Missense_Mutation p.D3232H 0.23 possibly_damaging(0.689) TCGA-38-4629-01 4 115998178 115998178 C T NDST4 Silent p.V5V 0.30 TCGA-38-4629-01 4 121961148 121961148 C A NDNF Missense_Mutation p.A84S 0.23 deleterious(0.02) benign(0.07) TCGA-38-4629-01 4 126373678 126373678 T A FAT4 Missense_Mutation p.I3836N 0.18 benign(0.299) TCGA-38-4629-01 4 134073342 134073342 G C PCDH10 Missense_Mutation p.V683L 0.09 tolerated(0.28) benign(0.082) TCGA-38-4629-01 4 155180838 155180838 T A DCHS2 Missense_Mutation p.L1761F 0.22 tolerated(0.08) benign(0.132) TCGA-38-4629-01 4 158284035 158284035 G A GRIA2 Missense_Mutation p.A831T 0.26 deleterious(0) probably_damaging(0.999) TCGA-38-4629-01 4 164271983 164271983 A T NPY5R Silent p.T186T 0.26 TCGA-38-4629-01 4 164393680 164393680 G T TKTL2 Missense_Mutation p.Q403K 0.36 tolerated(0.65) probably_damaging(0.997) TCGA-38-4629-01 4 167012328 167012328 C A TLL1 Missense_Mutation p.H831N 0.28 tolerated(0.1) benign(0.03) TCGA-38-4629-01 4 170610350 170610353 CATG AAT CLCN3 Frame_Shift_Del p.T192Kfs*5 0.14 TCGA-38-4629-01 4 20529935 20529935 A C SLIT2 Intron 0.22 TCGA-38-4629-01 4 30725202 30725202 C T PCDH7 Missense_Mutation p.P720S 0.22 deleterious(0.01) probably_damaging(0.91) TCGA-38-4629-01 4 3388075 3388075 G C RGS12 Intron 0.23 TCGA-38-4629-01 4 54294193 54294193 G T FIP1L1 Splice_Site p.X340_splice 0.20 TCGA-38-4629-01 4 5564436 5564436 G A EVC2 3'UTR 0.37 TCGA-38-4629-01 4 57873091 57873091 G T POLR2B Missense_Mutation p.G443C 0.18 deleterious(0) probably_damaging(1) TCGA-38-4629-01 4 62758579 62758579 C T LPHN3 Silent p.L494L 0.21 TCGA-38-4629-01 4 70066085 70066085 C A UGT2B11 3'UTR 0.33 TCGA-38-4629-01 4 73931122 73931122 T A COX18 Missense_Mutation p.Y148F 0.23 tolerated(0.76) benign(0.09) TCGA-38-4629-01 5 140167783 140167783 C G PCDHA1 Silent p.V636V 0.35 TCGA-38-4629-01 5 140712593 140712593 G T PCDHGA1 Missense_Mutation p.S781I 0.11 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-38-4629-01 5 140773060 140773060 G A PCDHGA8 Missense_Mutation p.R227H 0.39 tolerated_low_confidence(0.56) benign(0.028) TCGA-38-4629-01 5 143541875 143541875 G A YIPF5 Missense_Mutation p.T173I 0.37 tolerated(0.06) possibly_damaging(0.507) TCGA-38-4629-01 5 147491409 147491409 C G SPINK5 Missense_Mutation p.L591V 0.33 tolerated(0.26) benign(0.366) TCGA-38-4629-01 5 149360432 149360434 ATC - SLC26A2 In_Frame_Del p.I427del 0.24 TCGA-38-4629-01 5 151784306 151784306 C G NMUR2 Silent p.T123T 0.36 TCGA-38-4629-01 5 160757916 160757916 C T GABRB2 Missense_Mutation p.E351K 0.32 tolerated(0.18) benign(0.021) TCGA-38-4629-01 5 160763740 160763740 C A GABRB2 Missense_Mutation p.R193L 0.25 tolerated(0.34) benign(0.165) TCGA-38-4629-01 5 169535247 169535247 C A FOXI1 Missense_Mutation p.P257T 0.36 deleterious(0.04) benign(0.004) TCGA-38-4629-01 5 180582227 180582228 TG - OR2V2 Frame_Shift_Del p.V96Gfs*16 0.30 TCGA-38-4629-01 5 31401639 31401639 C A DROSHA Missense_Mutation p.R1342L 0.09 deleterious(0.01) possibly_damaging(0.809) TCGA-38-4629-01 5 31421442 31421442 C T DROSHA Missense_Mutation p.M1154I 0.22 deleterious(0.05) benign(0.055) TCGA-38-4629-01 5 37107805 37107805 T G C5orf42 Missense_Mutation p.T3165P 0.48 deleterious(0) probably_damaging(1) TCGA-38-4629-01 5 37183222 37183222 T A C5orf42 Missense_Mutation p.K1687N 0.07 deleterious(0.01) benign(0.066) TCGA-38-4629-01 5 41004585 41004585 G T MROH2B Missense_Mutation p.L1353M 0.17 tolerated(0.16) possibly_damaging(0.755) TCGA-38-4629-01 5 41186284 41186284 C A C6 Missense_Mutation p.R205I 0.19 deleterious(0) probably_damaging(0.94) TCGA-38-4629-01 5 61922992 61922992 G A IPO11 Silent p.K965K 0.37 TCGA-38-4629-01 5 6337389 6337389 T A CTD-2324F15.2 RNA 0.42 TCGA-38-4629-01 5 66406002 66406002 G T MAST4 Missense_Mutation p.R478L 0.39 probably_damaging(1) TCGA-38-4629-01 6 133044935 133044935 G T VNN3 3'UTR 0.39 TCGA-38-4629-01 6 146720582 146720582 C T GRM1 Missense_Mutation p.P803S 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-38-4629-01 6 157502244 157502244 G C ARID1B Missense_Mutation p.V1093L 0.39 probably_damaging(0.995) TCGA-38-4629-01 6 160905137 160905137 G A LPAL2 RNA 0.33 TCGA-38-4629-01 6 169648695 169648695 G T THBS2 Silent p.V142V 0.29 TCGA-38-4629-01 6 29408140 29408140 C T OR10C1 Silent p.A116A 0.41 TCGA-38-4629-01 6 30113788 30113788 G A TRIM40 Silent p.R121R 0.33 TCGA-38-4629-01 6 32188210 32188210 G T NOTCH4 Missense_Mutation p.F377L 0.37 deleterious(0) probably_damaging(0.989) TCGA-38-4629-01 6 43538674 43538674 C T XPO5 Missense_Mutation p.V120I 0.32 tolerated(0.27) benign(0.126) TCGA-38-4629-01 6 51612586 51612586 T A PKHD1 Missense_Mutation p.Q3276H 0.45 deleterious(0.01) possibly_damaging(0.823) TCGA-38-4629-01 6 51921691 51921691 A T PKHD1 Missense_Mutation p.H533Q 0.34 tolerated(0.44) benign(0.007) TCGA-38-4629-01 6 64421087 64421087 C A PHF3 Missense_Mutation p.P1276T 0.39 deleterious(0) probably_damaging(1) TCGA-38-4629-01 6 72678738 72678738 G C RIMS1 Missense_Mutation p.A73P 0.09 tolerated(0.25) benign(0.268) TCGA-38-4629-01 6 84650320 84650320 G T CYB5R4 Missense_Mutation p.R449I 0.48 deleterious(0) probably_damaging(1) TCGA-38-4629-01 6 96034410 96034410 A G MANEA Missense_Mutation p.N32S 0.10 tolerated(0.79) benign(0.108) TCGA-38-4629-01 7 100190489 100190489 T - FBXO24 Frame_Shift_Del p.T253Pfs*24 0.45 TCGA-38-4629-01 7 100675680 100675681 - T MUC17 Frame_Shift_Ins p.Y329Lfs*3 0.10 TCGA-38-4629-01 7 123101441 123101441 T - IQUB Frame_Shift_Del p.D660Mfs*8 0.08 TCGA-38-4629-01 7 124503667 124503667 C A POT1 Missense_Mutation p.G95C 0.17 tolerated(0.07) probably_damaging(0.963) TCGA-38-4629-01 7 133059653 133059654 - G EXOC4 Frame_Shift_Ins p.Y362Ifs*20 0.40 TCGA-38-4629-01 7 135418863 135418863 G A FAM180A Silent p.L128L 0.15 TCGA-38-4629-01 7 143421909 143421909 C T FAM115C 3'UTR 0.30 TCGA-38-4629-01 7 20782586 20782586 C A ABCB5 Silent p.S1037S 0.12 TCGA-38-4629-01 7 20784894 20784894 T C ABCB5 Missense_Mutation p.W1088R 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-38-4629-01 7 21775402 21775402 G T DNAH11 Nonsense_Mutation p.E2536* 0.17 TCGA-38-4629-01 7 26235526 26235526 C G HNRNPA2B1 Missense_Mutation p.G233A 0.14 tolerated(0.06) unknown(0) TCGA-38-4629-01 7 27147988 27147988 G T HOXA3 Nonsense_Mutation p.S293* 0.11 TCGA-38-4629-01 7 27181467 27181467 G T HOXA5 Missense_Mutation p.A267D 0.07 deleterious(0) possibly_damaging(0.71) TCGA-38-4629-01 7 38514960 38514960 T C AMPH Silent p.L187L 0.15 TCGA-38-4629-01 7 48335346 48335346 T G ABCA13 Missense_Mutation p.L3002R 0.08 possibly_damaging(0.878) TCGA-38-4629-01 7 55227926 55227926 G A EGFR Missense_Mutation p.G465R 0.26 tolerated(0.54) benign(0.023) TCGA-38-4629-01 7 57187793 57187793 G T ZNF479 Silent p.G443G 0.24 TCGA-38-4629-01 7 91708472 91708472 A G AKAP9 Missense_Mutation p.K2342R 0.73 benign(0.088) TCGA-38-4629-01 7 97619394 97619394 C A OCM2 Missense_Mutation p.S8I 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-38-4629-01 8 10102620 10102620 G T MSRA Missense_Mutation p.G73V 0.25 deleterious(0) probably_damaging(1) TCGA-38-4629-01 8 117657218 117657218 A G EIF3H 3'UTR 0.42 TCGA-38-4629-01 8 124138862 124138862 G A TBC1D31 Missense_Mutation p.V607I 0.13 tolerated(0.08) possibly_damaging(0.842) TCGA-38-4629-01 8 144997574 144997574 C T PLEC Missense_Mutation p.E2312K 0.11 probably_damaging(0.993) TCGA-38-4629-01 8 2820157 2820157 C A CSMD1 Silent p.V3153V 0.42 TCGA-38-4629-01 8 38162187 38162187 G A WHSC1L1 Silent p.Y843Y 0.19 TCGA-38-4629-01 8 39604102 39604102 G A ADAM2 Missense_Mutation p.P688L 0.25 tolerated(0.21) possibly_damaging(0.466) TCGA-38-4629-01 8 42329791 42329791 C A SLC20A2 Missense_Mutation p.G40C 0.18 deleterious(0) probably_damaging(1) TCGA-38-4629-01 8 59851894 59851894 C A TOX Missense_Mutation p.Q126H 0.15 deleterious(0) benign(0.365) TCGA-38-4629-01 8 91962079 91962079 A G NECAB1 Missense_Mutation p.Y302C 0.36 deleterious(0) probably_damaging(0.999) TCGA-38-4629-01 9 100190940 100190940 A T TDRD7 Missense_Mutation p.S65C 0.24 deleterious(0.01) probably_damaging(0.985) TCGA-38-4629-01 9 105767708 105767708 G C CYLC2 Missense_Mutation p.K265N 0.12 deleterious(0.01) unknown(0) TCGA-38-4629-01 9 107618201 107618201 G C ABCA1 Intron 0.09 TCGA-38-4629-01 9 116269565 116269565 A G RGS3 Splice_Site p.X362_splice 0.20 TCGA-38-4629-01 9 122075668 122075668 T A BRINP1 5'UTR 0.13 TCGA-38-4629-01 9 135932240 135932240 G T GTF3C5 Missense_Mutation p.E453D 0.18 tolerated(0.81) benign(0.001) TCGA-38-4629-01 9 2719074 2719074 C A KCNV2 Silent p.P445P 0.15 TCGA-38-4629-01 9 34402419 34402419 C T FAM219A Missense_Mutation p.D104N 0.23 deleterious(0.01) benign(0.011) TCGA-38-4629-01 9 3932421 3932421 G A GLIS3 Missense_Mutation p.P641L 0.21 deleterious(0) probably_damaging(0.999) TCGA-38-4629-01 9 43626819 43626819 C T SPATA31A6 Missense_Mutation p.R623Q 0.13 tolerated(1) benign(0) TCGA-38-4629-01 9 5185499 5185499 C A INSL6 Missense_Mutation p.R35M 0.31 deleterious(0) probably_damaging(0.951) TCGA-38-4629-01 9 6602206 6602206 C A GLDC Splice_Site p.X353_splice 0.37 TCGA-38-4629-01 9 79947017 79947017 T C VPS13A Missense_Mutation p.L2028S 0.19 deleterious(0) possibly_damaging(0.883) TCGA-38-4629-01 9 8518298 8518298 C A PTPRD Nonsense_Mutation p.E365* 0.36 TCGA-38-4629-01 9 8518299 8518299 C A PTPRD Missense_Mutation p.E364D 0.36 tolerated(0.86) probably_damaging(0.996) TCGA-38-4629-01 9 90534188 90534188 C A SPATA31C1 Intron 0.06 TCGA-38-4629-01 9 96860849 96860849 A T PTPDC1 Silent p.V665V 0.23 TCGA-38-4629-01 X 107977956 107977956 G T IRS4 Nonsense_Mutation p.S540* 0.43 TCGA-38-4629-01 X 129349794 129349795 - T ZNF280C Frame_Shift_Ins p.N603Kfs*2 0.10 TCGA-38-4629-01 X 147919249 147919249 C T AFF2 Missense_Mutation p.P389S 0.50 deleterious(0.04) benign(0.095) TCGA-38-4629-01 X 32827695 32827695 G A DMD Silent p.C188C 0.44 TCGA-38-4629-01 X 3530236 3530236 T A PRKX 3'UTR 0.40 TCGA-38-4629-01 X 38132728 38132728 A G TM4SF2 Intron 0.18 TCGA-38-4629-01 X 46913645 46913645 G T JADE3 Missense_Mutation p.G353V 0.38 deleterious(0.04) probably_damaging(0.961) TCGA-38-4629-01 X 86868947 86868947 C A KLHL4 Missense_Mutation p.H164N 0.51 deleterious(0) probably_damaging(0.998) TCGA-38-4629-01 Y 21869168 21869168 C T KDM5D Silent p.V1288V 0.25 TCGA-38-4630-01 10 104850489 104850489 C T NT5C2 Missense_Mutation p.S443N 0.35 deleterious(0.03) possibly_damaging(0.656) TCGA-38-4630-01 10 128114599 128114599 G A C10orf90 Silent p.I674I 0.31 TCGA-38-4630-01 10 49440183 49440183 G C FRMPD2 Silent p.T381T 0.39 TCGA-38-4630-01 10 70644771 70644771 C G STOX1 Missense_Mutation p.P407A 0.37 tolerated(0.41) benign(0.164) TCGA-38-4630-01 10 70645178 70645178 C G STOX1 Missense_Mutation p.I542M 0.41 tolerated(0.06) benign(0.071) TCGA-38-4630-01 10 74804763 74804763 G A P4HA1 Missense_Mutation p.T375M 0.35 tolerated(0.07) probably_damaging(0.937) TCGA-38-4630-01 11 113700169 113700169 G C USP28 Intron 0.38 TCGA-38-4630-01 11 114167355 114167355 A G NNMT Missense_Mutation p.K26R 0.32 tolerated(0.13) benign(0.004) TCGA-38-4630-01 11 123894435 123894435 C A OR10G9 Missense_Mutation p.T239N 0.40 deleterious(0.01) probably_damaging(0.988) TCGA-38-4630-01 11 130319634 130319634 C T ADAMTS15 Missense_Mutation p.P256S 0.33 deleterious(0) probably_damaging(0.994) TCGA-38-4630-01 11 132306577 132306577 A G OPCML Missense_Mutation p.F254S 0.28 deleterious(0) probably_damaging(0.998) TCGA-38-4630-01 11 18195626 18195626 G A MRGPRX4 Missense_Mutation p.V275M 0.41 deleterious(0.03) possibly_damaging(0.666) TCGA-38-4630-01 11 24518651 24518651 C T LUZP2 5'Flank 0.15 TCGA-38-4630-01 11 34113552 34113552 C T CAPRIN1 Nonsense_Mutation p.Q552* 0.30 TCGA-38-4630-01 11 55655667 55655667 A C TRIM51 Silent p.R223R 0.29 TCGA-38-4630-01 11 58317464 58317464 G A LPXN Silent p.C219C 0.35 TCGA-38-4630-01 11 63967504 63967504 G A STIP1 Silent p.Q372Q 0.13 TCGA-38-4630-01 11 63971036 63971036 G A STIP1 Missense_Mutation p.D501N 0.15 deleterious(0) probably_damaging(0.998) TCGA-38-4630-01 11 64010672 64010678 GGAAGCT - FKBP2 Frame_Shift_Del p.L60Mfs*44 0.10 TCGA-38-4630-01 11 76062227 76062228 - T PRKRIR Frame_Shift_Ins p.I656Nfs*9 0.28 TCGA-38-4630-01 12 113559367 113559367 C G RASAL1 Missense_Mutation p.Q125H 0.35 deleterious(0.02) benign(0.031) TCGA-38-4630-01 12 121605384 121605384 G A P2RX7 Missense_Mutation p.D280N 0.38 tolerated(0.22) benign(0.126) TCGA-38-4630-01 12 24736455 24736455 G A LINC00477 RNA 0.37 TCGA-38-4630-01 12 26775203 26775203 C T ITPR2 Silent p.Q1086Q 0.48 TCGA-38-4630-01 12 27070632 27070632 G T ASUN Silent p.G308G 0.06 TCGA-38-4630-01 12 30818182 30818184 AAT - IPO8 In_Frame_Del p.L467del 0.40 TCGA-38-4630-01 12 54858851 54858851 C A GTSF1 Missense_Mutation p.K39N 0.40 deleterious(0) probably_damaging(0.998) TCGA-38-4630-01 12 55420633 55420633 G A NEUROD4 Nonsense_Mutation p.W137* 0.31 TCGA-38-4630-01 12 55524128 55524128 T G OR9K2 Silent p.S192S 0.42 TCGA-38-4630-01 12 57111976 57111976 G A NACA Intron 0.44 TCGA-38-4630-01 12 7649601 7649601 C T CD163 Missense_Mutation p.A303T 0.39 tolerated(0.13) benign(0.034) TCGA-38-4630-01 12 89743225 89743225 C G DUSP6 Missense_Mutation p.D318H 0.34 deleterious(0) probably_damaging(0.996) TCGA-38-4630-01 13 21562678 21562678 G A LATS2 Missense_Mutation p.P414L 0.44 tolerated_low_confidence(0.23) benign(0.015) TCGA-38-4630-01 13 49712888 49712888 G C FNDC3A Missense_Mutation p.D256H 0.43 deleterious(0.01) benign(0.001) TCGA-38-4630-01 13 58299337 58299337 G C PCDH17 Missense_Mutation p.R1130T 0.32 deleterious_low_confidence(0.03) benign(0.344) TCGA-38-4630-01 13 84455675 84455675 C T SLITRK1 5'UTR 0.28 TCGA-38-4630-01 13 95050858 95050858 C T GPC6 Silent p.N476N 0.41 TCGA-38-4630-01 13 95364316 95364316 C T SOX21 5'UTR 0.31 TCGA-38-4630-01 13 99092214 99092214 G A FARP1 Splice_Site p.X812_splice 0.04 TCGA-38-4630-01 14 105418953 105418953 C G AHNAK2 Silent p.L945L 0.23 TCGA-38-4630-01 14 105419198 105419198 C G AHNAK2 Missense_Mutation p.E864Q 0.17 benign(0.382) TCGA-38-4630-01 14 22266023 22266023 G A TRAV8-1 Nonsense_Mutation p.W102* 0.42 TCGA-38-4630-01 14 24843028 24843028 G A NFATC4 Missense_Mutation p.G626R 0.26 deleterious(0) probably_damaging(0.999) TCGA-38-4630-01 14 39717345 39717345 G C MIA2 Missense_Mutation p.D523H 0.25 deleterious(0.01) probably_damaging(0.973) TCGA-38-4630-01 14 70714092 70714092 G A ADAM21P1 RNA 0.19 TCGA-38-4630-01 14 70924502 70924502 C T ADAM21 Missense_Mutation p.R96C 0.10 deleterious(0.01) possibly_damaging(0.849) TCGA-38-4630-01 14 80677711 80677712 - TCAA DIO2 Nonsense_Mutation p.K35Nfs*2 0.48 TCGA-38-4630-01 15 25349763 25349763 T A SNORD116-30 5'Flank 0.61 TCGA-38-4630-01 16 20043946 20043946 C A GPR139 Missense_Mutation p.R58I 0.31 tolerated(0.12) probably_damaging(0.913) TCGA-38-4630-01 16 2578344 2578346 CGC GG AMDHD2 Frame_Shift_Del p.A277Pfs*42 0.41 TCGA-38-4630-01 16 424341 424341 C G TMEM8A Missense_Mutation p.R545S 0.42 tolerated(0.25) benign(0.232) TCGA-38-4630-01 16 67220984 67220984 C G EXOC3L1 Missense_Mutation p.E366D 0.34 tolerated(0.36) benign(0.038) TCGA-38-4630-01 17 18208473 18208473 C G TOP3A Missense_Mutation p.R151T 0.20 deleterious(0) probably_damaging(1) TCGA-38-4630-01 17 2232642 2232642 G C TSR1 Missense_Mutation p.T633S 0.51 tolerated(0.07) benign(0.189) TCGA-38-4630-01 17 25758260 25758260 C T TBC1D3P5 RNA 0.38 TCGA-38-4630-01 17 33343556 33343556 G C RFFL Missense_Mutation p.S240C 0.34 deleterious(0) probably_damaging(0.999) TCGA-38-4630-01 17 39998143 39998143 A T KLHL10 Missense_Mutation p.D88V 0.51 deleterious(0.05) benign(0.04) TCGA-38-4630-01 17 43213400 43213400 C T ACBD4 Intron 0.13 TCGA-38-4630-01 17 43481669 43481669 C T ARHGAP27 Nonsense_Mutation p.W141* 0.28 TCGA-38-4630-01 17 43522871 43522871 C A PLEKHM1 Silent p.L934L 0.23 TCGA-38-4630-01 17 56345211 56345213 CTT - LPO In_Frame_Del p.F666del 0.41 TCGA-38-4630-01 17 64961111 64961111 C T CACNG4 Silent p.I28I 0.41 TCGA-38-4630-01 17 65190134 65190134 C T HELZ Missense_Mutation p.R169H 0.36 deleterious(0) probably_damaging(0.983) TCGA-38-4630-01 17 7578535 7578535 T C TP53 Missense_Mutation p.K132R 0.58 deleterious(0.01) probably_damaging(1) TCGA-38-4630-01 17 80545103 80545103 C T FOXK2 Missense_Mutation p.H581Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-38-4630-01 18 33694258 33694258 C T SLC39A6 Missense_Mutation p.G549S 0.49 deleterious(0.01) probably_damaging(1) TCGA-38-4630-01 18 47808911 47808911 G A CXXC1 3'UTR 0.06 TCGA-38-4630-01 19 1800443 1800443 G A ATP8B3 Silent p.F386F 0.52 TCGA-38-4630-01 19 19612198 19612198 C T GATAD2A Silent p.T491T 0.30 TCGA-38-4630-01 19 2877779 2877779 C T ZNF556 Nonsense_Mutation p.R275* 0.53 TCGA-38-4630-01 19 38877262 38877262 C T GGN Missense_Mutation p.G214S 0.10 tolerated_low_confidence(0.28) unknown(0) TCGA-38-4630-01 19 42314009 42314009 C G CEACAM3 Missense_Mutation p.S183R 0.03 tolerated(0.07) benign(0.255) TCGA-38-4630-01 19 6454687 6454687 G A SLC25A23 Silent p.F175F 0.65 TCGA-38-4630-01 1 119467373 119467373 A T TBX15 Missense_Mutation p.Y91N 0.04 deleterious(0) probably_damaging(0.986) TCGA-38-4630-01 1 12064925 12064925 C G MFN2 Missense_Mutation p.S479C 0.34 deleterious(0.05) probably_damaging(0.995) TCGA-38-4630-01 1 12939676 12939676 G T PRAMEF4 Missense_Mutation p.L376M 0.26 deleterious(0) probably_damaging(0.998) TCGA-38-4630-01 1 153509702 153509702 G C S100A5 3'UTR 0.22 TCGA-38-4630-01 1 155270024 155270024 C T PKLR Missense_Mutation p.E50K 0.48 deleterious_low_confidence(0.01) benign(0.146) TCGA-38-4630-01 1 155886524 155886524 C T KIAA0907 Missense_Mutation p.G482E 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-38-4630-01 1 16111175 16111175 G A FBLIM1 3'UTR 0.20 TCGA-38-4630-01 1 16258747 16258747 G A SPEN Silent p.P2004P 0.22 TCGA-38-4630-01 1 180003196 180003196 G C CEP350 Missense_Mutation p.E1309Q 0.05 benign(0.041) TCGA-38-4630-01 1 197074232 197074232 C T ASPM Missense_Mutation p.M1383I 0.12 deleterious(0) probably_damaging(0.98) TCGA-38-4630-01 1 201926494 201926494 C T TIMM17A Missense_Mutation p.R38C 0.06 deleterious(0) possibly_damaging(0.837) TCGA-38-4630-01 1 202931531 202931531 G C CYB5R1 3'UTR 0.45 TCGA-38-4630-01 1 220870013 220870013 C T C1orf115 Silent p.F123F 0.35 TCGA-38-4630-01 1 237936919 237936919 G T RYR2 Missense_Mutation p.V3916F 0.37 probably_damaging(0.985) TCGA-38-4630-01 1 40928346 40928346 A G ZFP69B Silent p.K230K 0.28 TCGA-38-4630-01 1 45297996 45297996 G T PTCH2 Missense_Mutation p.Q95K 0.38 tolerated(0.43) benign(0.004) TCGA-38-4630-01 1 53236866 53236866 T G ZYG11B Missense_Mutation p.I124S 0.44 deleterious(0) possibly_damaging(0.776) TCGA-38-4630-01 1 62738935 62738935 T A KANK4 Missense_Mutation p.Y614F 0.24 deleterious(0.04) benign(0.031) TCGA-38-4630-01 20 10394084 10394084 A C MKKS Missense_Mutation p.S27A 0.50 tolerated(0.16) benign(0.003) TCGA-38-4630-01 20 24994617 24994617 G A ACSS1 Missense_Mutation p.P478S 0.23 deleterious(0.01) probably_damaging(0.943) TCGA-38-4630-01 20 5170850 5170850 G C CDS2 Silent p.G436G 0.18 TCGA-38-4630-01 20 58519680 58519680 G T FAM217B Missense_Mutation p.A228S 0.38 tolerated(0.11) possibly_damaging(0.801) TCGA-38-4630-01 20 5921732 5921732 G A TRMT6 Silent p.L423L 0.39 TCGA-38-4630-01 21 11047544 11047544 C A BAGE2 RNA 0.08 TCGA-38-4630-01 22 16449007 16449007 G T OR11H1 Nonsense_Mutation p.C266* 0.30 TCGA-38-4630-01 22 24451495 24451495 C A CABIN1 Silent p.I322I 0.34 TCGA-38-4630-01 22 26118409 26118409 G T ADRBK2 Missense_Mutation p.G687C 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-38-4630-01 22 26887611 26887611 G C SRRD Missense_Mutation p.K331N 0.31 deleterious(0.03) benign(0.201) TCGA-38-4630-01 22 29837831 29837831 G A RFPL1 Missense_Mutation p.R225H 0.24 tolerated(0.53) benign(0.005) TCGA-38-4630-01 22 39917921 39917922 - C ATF4 Frame_Shift_Ins p.L126Pfs*6 0.22 TCGA-38-4630-01 22 41322589 41322589 T G XPNPEP3 3'UTR 0.40 TCGA-38-4630-01 22 42099416 42099416 C T MEI1 Nonsense_Mutation p.Q86* 0.33 TCGA-38-4630-01 2 135710263 135710263 G T CCNT2 Missense_Mutation p.K252N 0.21 deleterious(0) probably_damaging(0.993) TCGA-38-4630-01 2 168100783 168100783 G A XIRP2 Missense_Mutation p.D961N 0.33 possibly_damaging(0.449) TCGA-38-4630-01 2 188343416 188343416 G A TFPI Intron 0.27 TCGA-38-4630-01 2 192711260 192711260 C T SDPR Missense_Mutation p.R131H 0.26 deleterious(0.01) probably_damaging(0.941) TCGA-38-4630-01 2 223786028 223786028 C G ACSL3 Nonsense_Mutation p.S279* 0.40 TCGA-38-4630-01 2 231978590 231978590 C A HTR2B Missense_Mutation p.V136F 0.06 deleterious(0) probably_damaging(1) TCGA-38-4630-01 2 32715142 32715142 G C BIRC6 Missense_Mutation p.W2710C 0.27 probably_damaging(0.997) TCGA-38-4630-01 2 86831831 86831831 T G RNF103 Missense_Mutation p.N398T 0.45 tolerated(0.05) possibly_damaging(0.678) TCGA-38-4630-01 3 122353866 122353866 G A PARP15 Splice_Site p.X525_splice 0.28 TCGA-38-4630-01 3 128621404 128621404 G C ACAD9 Missense_Mutation p.M297I 0.16 deleterious(0) possibly_damaging(0.619) TCGA-38-4630-01 3 138291785 138291785 A T CEP70 Intron 0.08 TCGA-38-4630-01 3 143550916 143550916 C T SLC9A9 Missense_Mutation p.R108K 0.29 tolerated(0.11) possibly_damaging(0.726) TCGA-38-4630-01 3 148858845 148858845 G C HPS3 Missense_Mutation p.V252L 0.18 tolerated(0.27) possibly_damaging(0.893) TCGA-38-4630-01 3 148858854 148858854 C A HPS3 Missense_Mutation p.Q255K 0.19 tolerated(0.83) benign(0.056) TCGA-38-4630-01 3 150344870 150344870 T A SELT Missense_Mutation p.N179K 0.31 deleterious(0) possibly_damaging(0.475) TCGA-38-4630-01 3 164908075 164908075 C A SLITRK3 Missense_Mutation p.D182Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-38-4630-01 3 17550017 17550017 C T TBC1D5 Missense_Mutation p.E16K 0.33 deleterious_low_confidence(0.01) benign(0.15) TCGA-38-4630-01 3 194063201 194063201 C T CPN2 Silent p.K77K 0.18 TCGA-38-4630-01 3 44684351 44684351 C T ZNF197 Nonsense_Mutation p.R577* 0.35 TCGA-38-4630-01 3 46009262 46009262 G A FYCO1 Silent p.L522L 0.31 TCGA-38-4630-01 3 49940859 49940859 C T MST1R Missense_Mutation p.E62K 0.56 tolerated(0.08) benign(0.067) TCGA-38-4630-01 3 5251931 5251931 C G EDEM1 Silent p.V527V 0.66 TCGA-38-4630-01 3 66502017 66502017 C T LRIG1 Missense_Mutation p.G111S 0.29 deleterious(0.02) benign(0.265) TCGA-38-4630-01 4 126239448 126239448 G A FAT4 Missense_Mutation p.D628N 0.31 benign(0.139) TCGA-38-4630-01 4 146467854 146467854 G C SMAD1 Splice_Site p.X259_splice 0.33 TCGA-38-4630-01 4 1725529 1725529 G T TACC3 Missense_Mutation p.E79D 0.12 tolerated(0.06) benign(0.416) TCGA-38-4630-01 4 1730435 1730435 G T TACC3 Nonsense_Mutation p.E436* 0.23 TCGA-38-4630-01 4 39482024 39482024 G A LIAS 3'Flank 0.40 TCGA-38-4630-01 5 10442326 10442326 C T ROPN1L Missense_Mutation p.P16L 0.33 deleterious(0.02) probably_damaging(1) TCGA-38-4630-01 5 10442327 10442327 C T ROPN1L Silent p.P16P 0.33 TCGA-38-4630-01 5 139820670 139820670 G A ANKHD1 Missense_Mutation p.D286N 0.58 unknown(0) TCGA-38-4630-01 5 140167773 140167773 C T PCDHA1 Missense_Mutation p.T633M 0.55 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-38-4630-01 5 148207101 148207101 C A ADRB2 Missense_Mutation p.S236Y 0.58 tolerated(0.28) benign(0.101) TCGA-38-4630-01 5 15928576 15928576 C A FBXL7 Silent p.S235S 0.33 TCGA-38-4630-01 5 176887701 176887701 C T DBN1 Missense_Mutation p.D261N 0.71 deleterious(0.05) possibly_damaging(0.55) TCGA-38-4630-01 5 37480018 37480018 G C WDR70 Missense_Mutation p.D257H 0.10 deleterious(0) probably_damaging(0.998) TCGA-38-4630-01 6 132054832 132054832 G T ENPP3 Missense_Mutation p.K686N 0.05 tolerated(0.49) benign(0.022) TCGA-38-4630-01 6 138656212 138656212 C T KIAA1244 Missense_Mutation p.R2077W 0.31 deleterious(0) probably_damaging(0.999) TCGA-38-4630-01 6 169051407 169051407 C T SMOC2 Silent p.D329D 0.44 TCGA-38-4630-01 6 29141890 29141890 C G OR2J2 Missense_Mutation p.H160D 0.23 deleterious(0.01) possibly_damaging(0.462) TCGA-38-4630-01 6 29142165 29142165 C G OR2J2 Silent p.L251L 0.32 TCGA-38-4630-01 6 30657883 30657883 G A NRM Missense_Mutation p.R91W 0.35 deleterious(0.05) probably_damaging(0.939) TCGA-38-4630-01 6 3287315 3287315 A C SLC22A23 Missense_Mutation p.Y442D 0.21 tolerated(0.1) possibly_damaging(0.756) TCGA-38-4630-01 6 33239329 33239329 G A VPS52 Intron 0.40 TCGA-38-4630-01 6 74468721 74468721 C G CD109 Missense_Mutation p.S243C 0.41 deleterious(0.01) possibly_damaging(0.474) TCGA-38-4630-01 6 90052103 90052103 G A UBE2J1 Silent p.H59H 0.45 TCGA-38-4630-01 7 100685800 100685800 C G MUC17 Silent p.V3701V 0.52 TCGA-38-4630-01 7 148288208 148288208 C T C7orf33 Missense_Mutation p.T64M 0.56 deleterious_low_confidence(0.01) possibly_damaging(0.897) TCGA-38-4630-01 7 35009108 35009108 G A DPY19L1 Silent p.L244L 0.59 TCGA-38-4630-01 7 63726886 63726886 G T ZNF679 Missense_Mutation p.G292V 0.42 deleterious(0.01) probably_damaging(1) TCGA-38-4630-01 7 70255994 70255994 G A AUTS2 3'UTR 0.17 TCGA-38-4630-01 7 88964043 88964043 T G ZNF804B Missense_Mutation p.Y583D 0.57 deleterious(0) probably_damaging(0.921) TCGA-38-4630-01 8 105105725 105105725 A T RIMS2 Intron 0.38 TCGA-38-4630-01 8 121531009 121531009 C T MTBP Silent p.F854F 0.33 TCGA-38-4630-01 8 143845996 143845996 G C LYNX1 3'UTR 0.34 TCGA-38-4630-01 8 145010069 145010069 G A PLEC Silent p.F320F 0.35 TCGA-38-4630-01 8 19809451 19809451 T C LPL Missense_Mutation p.W141R 0.30 deleterious(0) probably_damaging(0.967) TCGA-38-4630-01 8 42233236 42233236 C T DKK4 Missense_Mutation p.R75Q 0.36 deleterious(0.02) probably_damaging(0.952) TCGA-38-4630-01 8 69104734 69104734 C T PREX2 Silent p.I1526I 0.31 TCGA-38-4630-01 8 70533431 70533431 C G SULF1 Silent p.A513A 0.38 TCGA-38-4630-01 9 131678377 131678377 C T LRRC8A Silent p.I720I 0.55 TCGA-38-4630-01 9 131784697 131784697 C A SH3GLB2 Silent p.T23T 0.49 TCGA-38-4630-01 9 140137954 140137954 C A TUBB4B Silent p.A428A 0.49 TCGA-38-4630-01 9 21333798 21333798 C G KLHL9 Missense_Mutation p.G354A 0.27 deleterious(0) probably_damaging(1) TCGA-38-4630-01 9 96323398 96323403 ACCTAT - FAM120A In_Frame_Del p.I940_P941del 0.40 TCGA-38-4630-01 X 25033723 25033723 C A ARX Silent p.L44L 0.52 TCGA-38-4630-01 X 41025388 41025388 G A USP9X Missense_Mutation p.R750Q 0.54 deleterious(0.02) possibly_damaging(0.46) TCGA-38-4630-01 X 5827179 5827179 C T NLGN4X Missense_Mutation p.G243R 0.52 deleterious(0) probably_damaging(0.999) TCGA-38-4631-01 10 101122153 101122153 G T CNNM1 Missense_Mutation p.Q676H 0.27 deleterious(0) probably_damaging(0.998) TCGA-38-4631-01 10 102783789 102783789 C A PDZD7 Missense_Mutation p.R88L 0.25 tolerated(0.14) benign(0.022) TCGA-38-4631-01 10 105197799 105197799 C T PDCD11 Silent p.N1291N 0.28 TCGA-38-4631-01 10 106737195 106737195 C A SORCS3 Missense_Mutation p.L300M 0.28 deleterious(0.03) possibly_damaging(0.799) TCGA-38-4631-01 10 11299787 11299787 C A CELF2 Missense_Mutation p.Q164K 0.35 tolerated(0.49) probably_damaging(0.993) TCGA-38-4631-01 10 118957067 118957067 G T KCNK18 Missense_Mutation p.G23V 0.14 tolerated(0.16) benign(0.28) TCGA-38-4631-01 10 119044326 119044326 C A PDZD8 Missense_Mutation p.D640Y 0.13 deleterious(0) possibly_damaging(0.905) TCGA-38-4631-01 10 121203194 121203194 G T GRK5 Missense_Mutation p.R399L 0.22 deleterious(0.02) possibly_damaging(0.458) TCGA-38-4631-01 10 12131102 12131102 C T DHTKD1 Missense_Mutation p.L279F 0.25 tolerated(0.09) benign(0.261) TCGA-38-4631-01 10 124672365 124672365 C A FAM24A Silent p.T71T 0.35 TCGA-38-4631-01 10 135204895 135204895 G T RP11-108K14.8 Missense_Mutation p.E30D 0.16 tolerated_low_confidence(0.64) benign(0) TCGA-38-4631-01 10 16957942 16957942 C A CUBN Missense_Mutation p.C2363F 0.26 deleterious(0) probably_damaging(1) TCGA-38-4631-01 10 17152917 17152917 C A CUBN Splice_Site p.X339_splice 0.28 TCGA-38-4631-01 10 17363209 17363209 C A ST8SIA6 Nonsense_Mutation p.E289* 0.28 TCGA-38-4631-01 10 17365138 17365138 G T ST8SIA6 Silent p.T218T 0.15 TCGA-38-4631-01 10 18242435 18242435 G A SLC39A12 Missense_Mutation p.R77K 0.23 tolerated(0.08) benign(0.027) TCGA-38-4631-01 10 18280107 18280107 C A SLC39A12 Missense_Mutation p.P433T 0.27 tolerated(0.46) benign(0.049) TCGA-38-4631-01 10 25886831 25886831 C A GPR158 Missense_Mutation p.T759K 0.35 deleterious(0) probably_damaging(0.954) TCGA-38-4631-01 10 27437936 27437936 A T YME1L1 Missense_Mutation p.F23I 0.05 deleterious_low_confidence(0.04) benign(0.407) TCGA-38-4631-01 10 31138374 31138374 T A ZNF438 Silent p.P320P 0.30 TCGA-38-4631-01 10 38344464 38344464 G A ZNF33A Missense_Mutation p.C471Y 0.12 deleterious(0) probably_damaging(1) TCGA-38-4631-01 10 48387881 48387881 C A RBP3 Missense_Mutation p.K999N 0.30 deleterious(0.02) benign(0.403) TCGA-38-4631-01 10 55570366 55570366 C A PCDH15 Nonsense_Mutation p.E1485* 0.06 TCGA-38-4631-01 10 56138550 56138550 C G PCDH15 Missense_Mutation p.D104H 0.08 deleterious(0) probably_damaging(1) TCGA-38-4631-01 10 70154087 70154087 G C RUFY2 Missense_Mutation p.Q209E 0.38 deleterious(0.03) benign(0.222) TCGA-38-4631-01 10 70332883 70332883 A G TET1 Missense_Mutation p.Q263R 0.12 deleterious(0.01) benign(0.118) TCGA-38-4631-01 10 73406454 73406454 G T CDH23 Missense_Mutation p.R510M 0.47 deleterious_low_confidence(0) benign(0.032) TCGA-38-4631-01 10 73468918 73468918 G A C10orf105 3'Flank 0.06 TCGA-38-4631-01 10 74628615 74628615 G C MCU Silent p.L217L 0.09 TCGA-38-4631-01 10 79603414 79603414 C A DLG5 Silent p.T305T 0.12 TCGA-38-4631-01 10 85982287 85982287 G T LRIT2 Missense_Mutation p.Q348K 0.16 tolerated(0.46) benign(0.008) TCGA-38-4631-01 10 87966366 87966366 G C GRID1 Missense_Mutation p.T92R 0.24 deleterious(0) probably_damaging(0.922) TCGA-38-4631-01 10 90497489 90497489 G T LIPK Missense_Mutation p.S256I 0.31 tolerated(0.07) benign(0.399) TCGA-38-4631-01 11 101375480 101375480 C A TRPC6 Nonsense_Mutation p.E74* 0.58 TCGA-38-4631-01 11 107219763 107219763 G A CWF19L2 Missense_Mutation p.P701L 0.17 deleterious(0) probably_damaging(0.999) TCGA-38-4631-01 11 10820818 10820818 T C EIF4G2 Silent p.L826L 0.36 TCGA-38-4631-01 11 110450210 110450210 G A ARHGAP20 Silent p.L1154L 0.44 TCGA-38-4631-01 11 113267990 113267990 C A ANKK1 Missense_Mutation p.R295S 0.46 tolerated(0.44) benign(0) TCGA-38-4631-01 11 117209310 117209310 G C CEP164 Missense_Mutation p.G3A 0.22 tolerated(0.06) benign(0.22) TCGA-38-4631-01 11 118498933 118498933 C T PHLDB1 Missense_Mutation p.S465F 0.06 deleterious(0) possibly_damaging(0.756) TCGA-38-4631-01 11 124618406 124618406 C T VSIG2 Missense_Mutation p.G244E 0.50 deleterious(0) probably_damaging(1) TCGA-38-4631-01 11 1246915 1246915 C T MUC5B Silent p.T25T 0.33 TCGA-38-4631-01 11 124789651 124789651 G A HEPN1 Missense_Mutation p.G2D 0.45 tolerated_low_confidence(0.08) benign(0.155) TCGA-38-4631-01 11 13378644 13378644 G T ARNTL Splice_Site p.X74_splice 0.26 TCGA-38-4631-01 11 15222397 15222397 G T INSC Missense_Mutation p.V288F 0.21 deleterious(0.01) possibly_damaging(0.487) TCGA-38-4631-01 11 18159298 18159298 G T MRGPRX3 Missense_Mutation p.W183C 0.05 tolerated(0.12) possibly_damaging(0.464) TCGA-38-4631-01 11 18485532 18485532 G T LDHAL6A Missense_Mutation p.V51L 0.24 deleterious(0.01) possibly_damaging(0.603) TCGA-38-4631-01 11 2427906 2427906 C G TRPM5 Missense_Mutation p.R1079P 0.14 deleterious(0) possibly_damaging(0.887) TCGA-38-4631-01 11 30033943 30033943 C T KCNA4 Missense_Mutation p.A95T 0.37 tolerated_low_confidence(0.59) benign(0.001) TCGA-38-4631-01 11 30914467 30914467 C A DCDC1 Silent p.P1657P 0.23 TCGA-38-4631-01 11 30925158 30925158 G T DCDC1 Missense_Mutation p.P1461T 0.14 tolerated(0.81) benign(0) TCGA-38-4631-01 11 30942459 30942459 C G DCDC1 Missense_Mutation p.D1053H 0.20 deleterious(0.05) probably_damaging(0.934) TCGA-38-4631-01 11 45117403 45117403 G T PRDM11 Missense_Mutation p.C16F 0.14 deleterious_low_confidence(0.03) benign(0) TCGA-38-4631-01 11 45671409 45671409 G T CHST1 Silent p.A355A 0.64 TCGA-38-4631-01 11 45672154 45672154 C - CHST1 Frame_Shift_Del p.G107Afs*11 0.12 TCGA-38-4631-01 11 45928102 45928102 C T C11orf94 3'UTR 0.10 TCGA-38-4631-01 11 46784048 46784048 C A CKAP5 Intron 0.21 TCGA-38-4631-01 11 47345865 47345865 C T MADD Missense_Mutation p.A1531V 0.33 deleterious(0.02) benign(0.125) TCGA-38-4631-01 11 48510487 48510487 C T OR4A47 Missense_Mutation p.T48I 0.10 tolerated_low_confidence(1) benign(0.013) TCGA-38-4631-01 11 51411781 51411781 C A OR4A5 Missense_Mutation p.M205I 0.20 tolerated_low_confidence(0.45) benign(0.02) TCGA-38-4631-01 11 5246896 5246896 G T HBB Missense_Mutation p.P126T 0.28 tolerated(0.08) benign(0) TCGA-38-4631-01 11 5443936 5443936 C A OR51Q1 Missense_Mutation p.P169H 0.31 tolerated(0.13) probably_damaging(1) TCGA-38-4631-01 11 55136162 55136162 G T OR4A15 Missense_Mutation p.C268F 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-38-4631-01 11 55432949 55432949 C A OR4C6 Missense_Mutation p.H103N 0.20 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-38-4631-01 11 55563911 55563911 C A OR5D14 Missense_Mutation p.L294I 0.23 deleterious(0) possibly_damaging(0.899) TCGA-38-4631-01 11 55594726 55594726 A T OR5L2 Missense_Mutation p.E11V 0.39 deleterious(0.03) possibly_damaging(0.475) TCGA-38-4631-01 11 56258455 56258455 T A OR5M8 Missense_Mutation p.Y131F 0.18 deleterious(0) probably_damaging(0.973) TCGA-38-4631-01 11 5757967 5757967 T - OR56B1 Frame_Shift_Del p.I74Tfs*5 0.20 TCGA-38-4631-01 11 57995501 57995501 A T OR10Q1 Missense_Mutation p.Y283N 0.13 deleterious(0) probably_damaging(0.997) TCGA-38-4631-01 11 58169980 58169980 T A OR5B3 Missense_Mutation p.K301N 0.09 deleterious_low_confidence(0.02) benign(0.167) TCGA-38-4631-01 11 58207585 58207585 C A OR5B12 Missense_Mutation p.G14W 0.39 deleterious_low_confidence(0) probably_damaging(1) TCGA-38-4631-01 11 5878090 5878090 T A OR52E8 Missense_Mutation p.L281F 0.25 tolerated(0.08) probably_damaging(0.983) TCGA-38-4631-01 11 60714008 60714008 C G SLC15A3 Missense_Mutation p.A282P 0.22 tolerated(0.19) possibly_damaging(0.588) TCGA-38-4631-01 11 6262914 6262914 G T CNGA4 Missense_Mutation p.G391C 0.28 deleterious(0) probably_damaging(1) TCGA-38-4631-01 11 63487648 63487648 G T RTN3 Missense_Mutation p.L558F 0.53 tolerated(0.41) benign(0.001) TCGA-38-4631-01 11 63487649 63487649 G T RTN3 Missense_Mutation p.V559F 0.52 deleterious(0) possibly_damaging(0.671) TCGA-38-4631-01 11 63666130 63666130 G T MARK2 Nonsense_Mutation p.E130* 0.48 TCGA-38-4631-01 11 64537758 64537758 T C SF1 Missense_Mutation p.N245S 0.57 tolerated(0.12) possibly_damaging(0.674) TCGA-38-4631-01 11 65270747 65270747 T A MALAT1 RNA 0.35 TCGA-38-4631-01 11 65338163 65338163 G A SSSCA1 Silent p.R36R 0.53 TCGA-38-4631-01 11 6651268 6651268 G A DCHS1 Missense_Mutation p.S1586F 0.16 deleterious(0) possibly_damaging(0.547) TCGA-38-4631-01 11 6943155 6943155 T G OR2D3 Missense_Mutation p.L308W 0.32 deleterious(0) probably_damaging(0.995) TCGA-38-4631-01 11 7065106 7065106 G T NLRP14 Missense_Mutation p.V617L 0.28 tolerated(0.08) benign(0.036) TCGA-38-4631-01 11 7488057 7488057 C A SYT9 3'UTR 0.31 TCGA-38-4631-01 11 85396024 85396024 C A CCDC89 3'UTR 0.47 TCGA-38-4631-01 11 92616381 92616381 G T FAT3 Silent p.V4253V 0.50 TCGA-38-4631-01 11 94040669 94040669 G T FOLR4 Missense_Mutation p.K181N 0.23 tolerated(0.16) probably_damaging(0.928) TCGA-38-4631-01 12 101748667 101748667 A G UTP20 Missense_Mutation p.D1722G 0.50 tolerated(0.2) benign(0.001) TCGA-38-4631-01 12 104126897 104126897 C A STAB2 Missense_Mutation p.F1799L 0.47 deleterious(0) possibly_damaging(0.86) TCGA-38-4631-01 12 109605836 109605836 G T ACACB Missense_Mutation p.A308S 0.11 deleterious(0.05) probably_damaging(0.985) TCGA-38-4631-01 12 111748370 111748370 C A CUX2 Missense_Mutation p.P595H 0.38 deleterious(0) probably_damaging(1) TCGA-38-4631-01 12 120159163 120159163 A G CIT Missense_Mutation p.L1228P 0.18 deleterious(0.04) probably_damaging(0.959) TCGA-38-4631-01 12 12037475 12037475 G T ETV6 Missense_Mutation p.R369L 0.65 deleterious(0) probably_damaging(1) TCGA-38-4631-01 12 121001251 121001251 G A RNF10 Silent p.E452E 0.25 TCGA-38-4631-01 12 122284813 122284813 A T HPD Silent p.A262A 0.29 TCGA-38-4631-01 12 124268652 124268652 C A DNAH10 Silent p.T325T 0.37 TCGA-38-4631-01 12 124824595 124824595 C A NCOR2 Missense_Mutation p.G1882C 0.42 probably_damaging(0.987) TCGA-38-4631-01 12 130184920 130184920 G T TMEM132D Silent p.R135R 0.39 TCGA-38-4631-01 12 16510579 16510579 G T MGST1 Missense_Mutation p.G56V 0.33 deleterious(0.04) benign(0.117) TCGA-38-4631-01 12 25347860 25347860 G A CASC1 Intron 0.46 TCGA-38-4631-01 12 3702357 3702357 G T PRMT8 3'UTR 0.48 TCGA-38-4631-01 12 46233111 46233111 G T ARID2 Splice_Site p.X444_splice 0.22 TCGA-38-4631-01 12 46592512 46592512 C A SLC38A1 Missense_Mutation p.D340Y 0.40 deleterious(0) probably_damaging(0.951) TCGA-38-4631-01 12 46592513 46592513 G A SLC38A1 Silent p.S339S 0.40 TCGA-38-4631-01 12 4700362 4700362 C A DYRK4 Missense_Mutation p.L6I 0.57 tolerated(0.3) benign(0.003) TCGA-38-4631-01 12 49444341 49444341 C T KMT2D Silent p.G1010G 0.49 TCGA-38-4631-01 12 51737560 51737560 C A CELA1 Missense_Mutation p.M59I 0.20 deleterious(0.03) possibly_damaging(0.464) TCGA-38-4631-01 12 52282598 52282598 G T ANKRD33 Missense_Mutation p.G131V 0.17 deleterious(0) probably_damaging(0.99) TCGA-38-4631-01 12 52818493 52818493 G T KRT75 Missense_Mutation p.S488R 0.57 tolerated(0.33) unknown(0) TCGA-38-4631-01 12 52843562 52843562 G T KRT6B Missense_Mutation p.L298M 0.32 deleterious(0.05) possibly_damaging(0.516) TCGA-38-4631-01 12 52843563 52843563 G T KRT6B Missense_Mutation p.F297L 0.31 deleterious(0) possibly_damaging(0.534) TCGA-38-4631-01 12 52913777 52913777 C T KRT5 Missense_Mutation p.G102S 0.07 tolerated(0.27) benign(0.016) TCGA-38-4631-01 12 55357547 55357548 CT A TESPA1 Frame_Shift_Del p.E211Dfs*109 0.42 TCGA-38-4631-01 12 57572802 57572802 A G LRP1 Missense_Mutation p.Y1579C 0.33 possibly_damaging(0.619) TCGA-38-4631-01 12 57606328 57606328 C T LRP1 Missense_Mutation p.P4542L 0.24 benign(0.002) TCGA-38-4631-01 12 57864471 57864471 G T GLI1 Missense_Mutation p.A650S 0.19 tolerated(0.37) benign(0.144) TCGA-38-4631-01 12 57943921 57943921 C A KIF5A 5'UTR 0.50 TCGA-38-4631-01 12 64815186 64815186 G C XPOT Missense_Mutation p.E339Q 0.27 deleterious(0.03) probably_damaging(0.959) TCGA-38-4631-01 12 71966695 71966695 G T LGR5 Missense_Mutation p.R401L 0.24 deleterious(0) probably_damaging(0.974) TCGA-38-4631-01 12 75434841 75434841 G T KCNC2 3'UTR 0.44 TCGA-38-4631-01 12 78583961 78583961 G T NAV3 Missense_Mutation p.A2063S 0.45 tolerated(0.93) benign(0.358) TCGA-38-4631-01 12 81101537 81101537 C A MYF6 Missense_Mutation p.F13L 0.09 deleterious(0) probably_damaging(0.982) TCGA-38-4631-01 12 81734915 81734915 G T PPFIA2 Missense_Mutation p.P779T 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-38-4631-01 12 81751860 81751860 C G PPFIA2 Splice_Site p.X591_splice 0.13 TCGA-38-4631-01 12 85260837 85260837 A T SLC6A15 Missense_Mutation p.V544E 0.26 deleterious(0) possibly_damaging(0.751) TCGA-38-4631-01 12 85623409 85623409 G C LRRIQ1 Missense_Mutation p.S1646T 0.19 deleterious(0.05) benign(0.146) TCGA-38-4631-01 13 101890223 101890223 A T NALCN Nonsense_Mutation p.C439* 0.52 TCGA-38-4631-01 13 103446052 103446052 C A KDELC1 Missense_Mutation p.A165S 0.46 tolerated(0.57) benign(0.003) TCGA-38-4631-01 13 25266922 25266922 C A ATP12A Intron 0.09 TCGA-38-4631-01 13 26621089 26621089 C A SHISA2 Missense_Mutation p.Q150H 0.26 deleterious(0) possibly_damaging(0.837) TCGA-38-4631-01 13 28877397 28877397 G T FLT1 Silent p.T1308T 0.09 TCGA-38-4631-01 13 32783010 32783010 A T FRY Missense_Mutation p.T1347S 0.11 tolerated(0.14) possibly_damaging(0.741) TCGA-38-4631-01 13 32937491 32937491 A G BRCA2 Missense_Mutation p.I2718V 0.15 tolerated(1) benign(0.01) TCGA-38-4631-01 13 33591005 33591005 G - KL Frame_Shift_Del p.V144Sfs*155 0.39 TCGA-38-4631-01 13 41636824 41636824 G A WBP4 Missense_Mutation p.C16Y 0.05 deleterious(0) probably_damaging(0.995) TCGA-38-4631-01 13 46559724 46559724 C A ZC3H13 Missense_Mutation p.M476I 0.03 unknown(0) TCGA-38-4631-01 13 53420300 53420300 C A PCDH8 Missense_Mutation p.G758W 0.56 deleterious(0) probably_damaging(0.999) TCGA-38-4631-01 13 53420511 53420511 C A PCDH8 Missense_Mutation p.R687S 0.80 tolerated(0.32) benign(0.015) TCGA-38-4631-01 13 84455480 84455480 C A SLITRK1 Missense_Mutation p.A55S 0.48 deleterious(0.02) benign(0.072) TCGA-38-4631-01 13 93518679 93518679 C A GPC5 Missense_Mutation p.P569H 0.40 tolerated_low_confidence(0.17) benign(0.003) TCGA-38-4631-01 13 95095718 95095718 A G DCT Silent p.L484L 0.59 TCGA-38-4631-01 14 101201093 101201093 C A DLK1 Missense_Mutation p.R338S 0.25 deleterious(0) probably_damaging(0.927) TCGA-38-4631-01 14 20502863 20502863 T A OR4K13 Nonsense_Mutation p.K19* 0.37 TCGA-38-4631-01 14 20876106 20876106 C A TEP1 Nonsense_Mutation p.G165* 0.28 TCGA-38-4631-01 14 22090018 22090018 C T TRAV1-1 5'UTR 0.14 TCGA-38-4631-01 14 23530581 23530581 C A ACIN1 Missense_Mutation p.R1175L 0.22 probably_damaging(0.987) TCGA-38-4631-01 14 23531687 23531687 T A ACIN1 Missense_Mutation p.T1035S 0.18 benign(0.316) TCGA-38-4631-01 14 23893161 23893161 C G MYH7 Silent p.L959L 0.19 TCGA-38-4631-01 14 24538064 24538064 C A LRRC16B Missense_Mutation p.Q1291K 0.30 tolerated_low_confidence(0.9) unknown(0) TCGA-38-4631-01 14 24655132 24655132 C T IPO4 Silent p.Q368Q 0.11 TCGA-38-4631-01 14 26918152 26918152 G - NOVA1 Frame_Shift_Del p.N180Tfs*6 0.15 TCGA-38-4631-01 14 47120870 47120870 G - RPL10L Frame_Shift_Del p.R24Efs*54 0.21 TCGA-38-4631-01 14 47566251 47566251 A T MDGA2 Missense_Mutation p.V334D 0.09 tolerated(0.64) benign(0.156) TCGA-38-4631-01 14 50626482 50626482 C T SOS2 Missense_Mutation p.E507K 0.19 deleterious(0) possibly_damaging(0.826) TCGA-38-4631-01 14 52433353 52433353 C T GNG2 Missense_Mutation p.P55L 0.27 deleterious(0.02) probably_damaging(1) TCGA-38-4631-01 14 55902569 55902569 G - TBPL2 Frame_Shift_Del p.P231Qfs*8 0.11 TCGA-38-4631-01 14 56645093 56645093 A G PELI2 Missense_Mutation p.K40E 0.17 deleterious(0.02) benign(0.065) TCGA-38-4631-01 14 64953726 64953726 C A ZBTB25 Missense_Mutation p.R408L 0.38 tolerated(0.07) benign(0.06) TCGA-38-4631-01 14 78397954 78397954 A G ADCK1 Missense_Mutation p.T434A 0.27 deleterious(0) probably_damaging(0.976) TCGA-38-4631-01 14 91007748 91007748 G T TTC7B Silent p.P832P 0.50 TCGA-38-4631-01 14 94933527 94933527 G A SERPINA9 Missense_Mutation p.P292L 0.32 deleterious(0) probably_damaging(1) TCGA-38-4631-01 15 101112154 101112154 C A LINS Missense_Mutation p.D447Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-38-4631-01 15 101434374 101434374 G T ALDH1A3 Intron 0.18 TCGA-38-4631-01 15 24923730 24923730 G T NPAP1 Missense_Mutation p.G906W 0.40 deleterious(0.03) probably_damaging(0.943) TCGA-38-4631-01 15 25470426 25470426 A C SNORD115-30 RNA 0.06 TCGA-38-4631-01 15 26812800 26812800 T C GABRB3 Missense_Mutation p.I255V 0.50 tolerated(0.15) probably_damaging(0.998) TCGA-38-4631-01 15 28000591 28000591 G T OCA2 Silent p.S820S 0.20 TCGA-38-4631-01 15 29409379 29409379 C T APBA2 3'UTR 0.41 TCGA-38-4631-01 15 33999197 33999197 G T RYR3 Missense_Mutation p.W2187C 0.33 probably_damaging(0.986) TCGA-38-4631-01 15 34015043 34015043 G C RYR3 Missense_Mutation p.K2249N 0.43 benign(0.016) TCGA-38-4631-01 15 38591588 38591588 G T SPRED1 Missense_Mutation p.R16L 0.07 deleterious(0) possibly_damaging(0.882) TCGA-38-4631-01 15 43430790 43430790 G - TMEM62 Frame_Shift_Del p.S150Ifs*37 0.28 TCGA-38-4631-01 15 43658617 43658617 G C ZSCAN29 Missense_Mutation p.L305V 0.10 deleterious(0) probably_damaging(0.999) TCGA-38-4631-01 15 48052531 48052531 G A SEMA6D Missense_Mutation p.R47H 0.31 tolerated(0.13) probably_damaging(0.994) TCGA-38-4631-01 15 48063041 48063041 C G SEMA6D Missense_Mutation p.H761D 0.26 tolerated(0.68) benign(0.001) TCGA-38-4631-01 15 48063050 48063050 C A SEMA6D Missense_Mutation p.Q764K 0.37 deleterious(0.04) probably_damaging(0.909) TCGA-38-4631-01 15 50515330 50515330 G T SLC27A2 Missense_Mutation p.V381F 0.09 deleterious(0) possibly_damaging(0.848) TCGA-38-4631-01 15 50838794 50838794 G C USP50 5'UTR 0.48 TCGA-38-4631-01 15 54305103 54305103 G T UNC13C Translation_Start_Site p.M1? 0.18 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-38-4631-01 15 56142806 56142806 C A NEDD4 Missense_Mutation p.W774C 0.32 deleterious(0) probably_damaging(0.997) TCGA-38-4631-01 15 56142807 56142807 C A NEDD4 Missense_Mutation p.W774L 0.31 deleterious(0) probably_damaging(0.983) TCGA-38-4631-01 15 63004131 63004131 G T TLN2 Missense_Mutation p.R830L 0.31 deleterious(0) possibly_damaging(0.566) TCGA-38-4631-01 15 65702613 65702613 C A IGDCC4 Nonsense_Mutation p.E156* 0.18 TCGA-38-4631-01 15 65702614 65702614 C A IGDCC4 Missense_Mutation p.E155D 0.16 tolerated(0.27) possibly_damaging(0.762) TCGA-38-4631-01 15 67457257 67457257 G T SMAD3 Silent p.V77V 0.07 TCGA-38-4631-01 15 68628073 68628073 G T ITGA11 Silent p.R463R 0.20 TCGA-38-4631-01 15 72691081 72691081 C T TMEM202 Nonsense_Mutation p.R57* 0.15 TCGA-38-4631-01 15 81181089 81181089 G C KIAA1199 Missense_Mutation p.E306Q 0.08 tolerated(0.29) possibly_damaging(0.881) TCGA-38-4631-01 15 81584983 81584983 G T IL16 Missense_Mutation p.A503S 0.28 tolerated(0.38) benign(0.114) TCGA-38-4631-01 15 84237419 84237419 C - SH3GL3 Frame_Shift_Del p.F110Lfs*5 0.29 TCGA-38-4631-01 15 86801251 86801251 G - AGBL1 Frame_Shift_Del p.V276Wfs*10 0.16 TCGA-38-4631-01 15 86807756 86807756 T A AGBL1 Missense_Mutation p.S406T 0.27 tolerated(0.29) benign(0.014) TCGA-38-4631-01 15 86807757 86807757 C A AGBL1 Missense_Mutation p.S406Y 0.28 deleterious(0.02) possibly_damaging(0.45) TCGA-38-4631-01 15 89398308 89398308 C T ACAN Missense_Mutation p.P831L 0.38 tolerated(0.19) possibly_damaging(0.713) TCGA-38-4631-01 15 90021158 90021158 G T RHCG Silent p.T295T 0.21 TCGA-38-4631-01 15 95001411 95001411 G C MCTP2 Missense_Mutation p.D766H 0.24 deleterious(0) possibly_damaging(0.731) TCGA-38-4631-01 15 98995130 98995130 C G FAM169B Silent p.R98R 0.25 TCGA-38-4631-01 15 99465614 99465614 G C IGF1R Silent p.L813L 0.22 TCGA-38-4631-01 16 12145987 12145987 C T SNX29 Silent p.S344S 0.12 TCGA-38-4631-01 16 20576096 20576096 G A ACSM2B Silent p.Y24Y 0.26 TCGA-38-4631-01 16 24979672 24979672 C A ARHGAP17 Missense_Mutation p.R154M 0.28 deleterious(0) probably_damaging(0.996) TCGA-38-4631-01 16 27455957 27455957 G - IL21R Frame_Shift_Del p.A202Qfs*29 0.26 TCGA-38-4631-01 16 27460516 27460516 C A IL21R Missense_Mutation p.P510H 0.11 tolerated(0.13) probably_damaging(0.955) TCGA-38-4631-01 16 27544624 27544624 C T GTF3C1 Silent p.L279L 0.17 TCGA-38-4631-01 16 3074228 3074228 C T THOC6 5'UTR 0.73 TCGA-38-4631-01 16 31419214 31419214 A T ITGAD Missense_Mutation p.Q329L 0.35 deleterious(0) possibly_damaging(0.545) TCGA-38-4631-01 16 31422636 31422636 A T ITGAD Missense_Mutation p.Q502L 0.14 tolerated(0.1) benign(0.003) TCGA-38-4631-01 16 32077590 32077590 A T IGHV3OR16-9 Missense_Mutation p.T69S 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.57) TCGA-38-4631-01 16 48138053 48138053 C G ABCC12 Missense_Mutation p.R967P 0.43 tolerated(0.2) possibly_damaging(0.589) TCGA-38-4631-01 16 49669980 49669980 G T ZNF423 Missense_Mutation p.T1028K 0.25 deleterious(0) probably_damaging(0.951) TCGA-38-4631-01 16 49670412 49670412 G T ZNF423 Missense_Mutation p.P884H 0.22 deleterious(0.01) probably_damaging(0.98) TCGA-38-4631-01 16 61823358 61823358 C A CDH8 Nonsense_Mutation p.E436* 0.41 TCGA-38-4631-01 16 65005902 65005902 G A CDH11 Missense_Mutation p.P486S 0.61 deleterious(0) probably_damaging(0.996) TCGA-38-4631-01 16 71392788 71392788 C G CALB2 Missense_Mutation p.D31E 0.54 deleterious(0.01) benign(0.073) TCGA-38-4631-01 16 727795 727795 G T RHBDL1 Missense_Mutation p.G354C 0.33 deleterious(0) probably_damaging(1) TCGA-38-4631-01 16 72834018 72834018 G C ZFHX3 Missense_Mutation p.P1292R 0.27 possibly_damaging(0.802) TCGA-38-4631-01 16 823010 823010 C A MSLNL Silent p.R725R 0.43 TCGA-38-4631-01 16 89977673 89977673 G A TCF25 3'UTR 0.27 TCGA-38-4631-01 17 10430338 10430338 G C MYH2 Missense_Mutation p.L1303V 0.23 tolerated(0.05) benign(0.371) TCGA-38-4631-01 17 11865393 11865393 C A DNAH9 Missense_Mutation p.N4351K 0.40 probably_damaging(0.923) TCGA-38-4631-01 17 1494602 1494602 T A SLC43A2 Missense_Mutation p.T298S 0.40 tolerated(0.59) benign(0.304) TCGA-38-4631-01 17 15406305 15406305 T G TVP23C Missense_Mutation p.Q235P 0.23 tolerated_low_confidence(0.1) benign(0.04) TCGA-38-4631-01 17 16456684 16456684 T C ZNF287 Missense_Mutation p.K258E 0.49 tolerated(0.6) benign(0.013) TCGA-38-4631-01 17 21318872 21318872 C A KCNJ12 Missense_Mutation p.T73N 0.15 deleterious(0) probably_damaging(0.973) TCGA-38-4631-01 17 26800700 26800700 G C SLC13A2 5'UTR 0.36 TCGA-38-4631-01 17 26955577 26955577 C A KIAA0100 Nonsense_Mutation p.E1434* 0.35 TCGA-38-4631-01 17 28539837 28539837 C T SLC6A4 Silent p.S375S 0.25 TCGA-38-4631-01 17 28772927 28772927 G T CPD Missense_Mutation p.R921L 0.15 tolerated(0.26) benign(0.032) TCGA-38-4631-01 17 29654692 29654692 A T NF1 Missense_Mutation p.Q1815L 0.33 tolerated(0.13) possibly_damaging(0.663) TCGA-38-4631-01 17 30207728 30207728 C A UTP6 Silent p.V277V 0.12 TCGA-38-4631-01 17 3182149 3182149 C A OR3A2 Silent p.V27V 0.37 TCGA-38-4631-01 17 33802074 33802074 T C SLFN12L Silent p.T545T 0.31 TCGA-38-4631-01 17 33806457 33806457 C G SLFN12L Missense_Mutation p.G258R 0.19 deleterious(0) probably_damaging(0.999) TCGA-38-4631-01 17 39274398 39274398 G T KRTAP4-11 Missense_Mutation p.S57Y 0.42 deleterious(0.01) unknown(0) TCGA-38-4631-01 17 39316477 39316477 T C KRTAP4-4 Missense_Mutation p.Y156C 0.27 unknown(0) TCGA-38-4631-01 17 40342359 40342359 C G GHDC Intron 0.18 TCGA-38-4631-01 17 40468916 40468916 C G STAT3 Silent p.T716T 0.11 TCGA-38-4631-01 17 40872313 40872313 C G EZH1 Missense_Mutation p.K214N 0.19 tolerated(0.06) probably_damaging(0.991) TCGA-38-4631-01 17 43906640 43906640 C T CRHR1 Silent p.I129I 0.25 TCGA-38-4631-01 17 45299788 45299788 G T MYL4 Missense_Mutation p.G177V 0.11 deleterious(0) probably_damaging(0.972) TCGA-38-4631-01 17 48272811 48272811 C A COL1A1 Missense_Mutation p.G395V 0.17 unknown(0) TCGA-38-4631-01 17 51900651 51900651 C A KIF2B Missense_Mutation p.A86D 0.11 tolerated(0.61) benign(0.404) TCGA-38-4631-01 17 6364785 6364785 T A PITPNM3 Missense_Mutation p.N800Y 0.40 deleterious(0) probably_damaging(0.992) TCGA-38-4631-01 17 67130881 67130881 G T ABCA6 Missense_Mutation p.H155N 0.26 tolerated(0.09) probably_damaging(0.948) TCGA-38-4631-01 17 71204463 71204464 - G COG1 Frame_Shift_Ins p.A940Gfs*7 0.38 TCGA-38-4631-01 17 72240154 72240154 G T TTYH2 Missense_Mutation p.W257L 0.13 deleterious(0) probably_damaging(0.995) TCGA-38-4631-01 17 72368433 72368433 C G GPR142 Silent p.G361G 0.47 TCGA-38-4631-01 17 72921751 72921751 G T OTOP2 Silent p.L138L 0.42 TCGA-38-4631-01 17 73262985 73262985 G T MIF4GD Missense_Mutation p.R210S 0.33 deleterious(0.01) possibly_damaging(0.791) TCGA-38-4631-01 17 73263869 73263869 G T MIF4GD Silent p.V143V 0.18 TCGA-38-4631-01 17 7358600 7358600 C G CHRNB1 Intron 0.08 TCGA-38-4631-01 17 73836587 73836587 C T UNC13D Splice_Site p.X251_splice 0.41 TCGA-38-4631-01 17 7836274 7836274 G A CNTROB 5'UTR 0.50 TCGA-38-4631-01 17 79994492 79994492 C A DCXR Nonsense_Mutation p.G126* 0.26 TCGA-38-4631-01 17 8135134 8135134 C A CTC1 Splice_Site p.X796_splice 0.08 TCGA-38-4631-01 17 8809052 8809052 G T PIK3R5 Silent p.V69V 0.50 TCGA-38-4631-01 18 12496079 12496079 C A SPIRE1 Missense_Mutation p.R332L 0.15 deleterious(0) possibly_damaging(0.462) TCGA-38-4631-01 18 2847926 2847926 T A EMILIN2 Missense_Mutation p.L85Q 0.26 tolerated(0.1) probably_damaging(0.966) TCGA-38-4631-01 18 29111028 29111028 A T DSG2 Missense_Mutation p.R365W 0.31 deleterious(0.03) benign(0.025) TCGA-38-4631-01 18 29867399 29867399 C A GAREM Silent p.S387S 0.22 TCGA-38-4631-01 18 31599524 31599524 C A NOL4 Missense_Mutation p.G272W 0.15 deleterious(0.01) probably_damaging(1) TCGA-38-4631-01 18 32407638 32407638 G T DTNA Missense_Mutation p.R361S 0.18 tolerated(0.17) benign(0.149) TCGA-38-4631-01 18 346494 346494 G T COLEC12 Silent p.T376T 0.26 TCGA-38-4631-01 18 3845282 3845282 T C DLGAP1 Intron 0.43 TCGA-38-4631-01 18 43204724 43204724 C A SLC14A2 Nonsense_Mutation p.S32* 0.18 TCGA-38-4631-01 18 48255621 48255621 G C MAPK4 Silent p.A387A 0.33 TCGA-38-4631-01 18 50432650 50432650 C A DCC Missense_Mutation p.P217T 0.19 tolerated(0.35) benign(0.162) TCGA-38-4631-01 18 51025665 51025665 C A DCC Intron 0.16 TCGA-38-4631-01 18 51025666 51025666 A G DCC Splice_Site p.X1300_splice 0.16 TCGA-38-4631-01 18 54444111 54444111 G T WDR7 Missense_Mutation p.G983C 0.20 deleterious(0) probably_damaging(1) TCGA-38-4631-01 18 60563197 60563197 G C PHLPP1 Missense_Mutation p.R799S 0.20 tolerated(0.76) benign(0.01) TCGA-38-4631-01 18 61234152 61234152 G T SERPINB12 Missense_Mutation p.V376L 0.34 tolerated(0.62) benign(0.022) TCGA-38-4631-01 18 63526277 63526277 G A CDH7 Missense_Mutation p.G497R 0.24 deleterious(0) probably_damaging(0.936) TCGA-38-4631-01 18 64211979 64211979 C T CDH19 Missense_Mutation p.E313K 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-38-4631-01 18 7231772 7231772 G C LRRC30 Missense_Mutation p.Q212H 0.43 deleterious(0.01) probably_damaging(0.979) TCGA-38-4631-01 18 7231799 7231799 C A LRRC30 Silent p.I221I 0.39 TCGA-38-4631-01 18 74154222 74154222 C A ZNF516 Silent p.L263L 0.19 TCGA-38-4631-01 18 74154223 74154223 A G ZNF516 Missense_Mutation p.L263P 0.19 deleterious(0) probably_damaging(1) TCGA-38-4631-01 18 74624286 74624286 G T ZNF236 Missense_Mutation p.Q962H 0.21 tolerated(0.07) benign(0.005) TCGA-38-4631-01 18 8783929 8783929 G T SOGA2 Missense_Mutation p.E273D 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-38-4631-01 19 10091370 10091370 T C COL5A3 Splice_Site p.X854_splice 0.26 TCGA-38-4631-01 19 10610293 10610293 G T KEAP1 Missense_Mutation p.F139L 0.38 deleterious(0) probably_damaging(0.999) TCGA-38-4631-01 19 11138491 11138491 G T SMARCA4 Nonsense_Mutation p.E1083* 0.52 TCGA-38-4631-01 19 17283219 17283219 G C MYO9B Missense_Mutation p.G623R 0.45 tolerated(0.09) probably_damaging(0.936) TCGA-38-4631-01 19 17758111 17758111 G A UNC13A Silent p.D669D 0.38 TCGA-38-4631-01 19 19339042 19339042 G T NCAN Silent p.T871T 0.44 TCGA-38-4631-01 19 21476272 21476272 G T ZNF708 Missense_Mutation p.T499N 0.36 deleterious(0) probably_damaging(0.982) TCGA-38-4631-01 19 22156742 22156742 C A ZNF208 Missense_Mutation p.G365V 0.46 deleterious(0) probably_damaging(1) TCGA-38-4631-01 19 22363512 22363512 G T ZNF676 Missense_Mutation p.P336H 0.28 deleterious(0.02) possibly_damaging(0.757) TCGA-38-4631-01 19 22586234 22586234 T A ZNF98 Missense_Mutation p.L37F 0.10 deleterious(0) probably_damaging(0.996) TCGA-38-4631-01 19 30935025 30935025 G T ZNF536 Missense_Mutation p.G186C 0.41 deleterious(0.02) probably_damaging(1) TCGA-38-4631-01 19 36159571 36159571 G T UPK1A Intron 0.45 TCGA-38-4631-01 19 36245208 36245208 G C LIN37 Missense_Mutation p.R216P 0.43 deleterious(0.05) benign(0.395) TCGA-38-4631-01 19 36832249 36832249 G T ZFP14 Missense_Mutation p.T160N 0.09 tolerated(0.07) benign(0.063) TCGA-38-4631-01 19 37129923 37129923 C A ZNF461 Nonsense_Mutation p.E442* 0.34 TCGA-38-4631-01 19 37677515 37677515 A T ZNF585B Silent p.I308I 0.19 TCGA-38-4631-01 19 40504258 40504258 G T ZNF546 Missense_Mutation p.G9W 0.25 deleterious_low_confidence(0.04) probably_damaging(0.981) TCGA-38-4631-01 19 40704286 40704286 G T MAP3K10 Silent p.L229L 0.18 TCGA-38-4631-01 19 41206254 41206254 C A ADCK4 Silent p.L332L 0.07 TCGA-38-4631-01 19 41454958 41454958 G C AC092071.1 3'Flank 0.50 TCGA-38-4631-01 19 41522649 41522649 C T CYP2B6 Missense_Mutation p.P465S 0.24 deleterious(0.02) benign(0.07) TCGA-38-4631-01 19 4292732 4292732 G T TMIGD2 Nonsense_Mutation p.S238* 0.51 TCGA-38-4631-01 19 44417580 44417580 C G ZNF45 Missense_Mutation p.D670H 0.24 tolerated(0.08) benign(0.003) TCGA-38-4631-01 19 44501580 44501580 G C ZNF155 Missense_Mutation p.R535P 0.47 tolerated(0.06) probably_damaging(0.935) TCGA-38-4631-01 19 44679240 44679240 G T ZNF226 Intron 0.53 TCGA-38-4631-01 19 46299364 46299364 T C RSPH6A Silent p.K639K 0.21 TCGA-38-4631-01 19 48343139 48343139 C A CRX Missense_Mutation p.P272H 0.24 tolerated(0.11) probably_damaging(0.923) TCGA-38-4631-01 19 48919405 48919406 CT A GRIN2D Frame_Shift_Del p.F577Sfs*11 0.20 TCGA-38-4631-01 19 49610944 49610944 G T SNRNP70 Missense_Mutation p.D214Y 0.30 deleterious(0.01) probably_damaging(0.921) TCGA-38-4631-01 19 51220046 51220046 C A SHANK1 Missense_Mutation p.G44V 0.15 probably_damaging(0.972) TCGA-38-4631-01 19 51411735 51411735 C A KLK4 Silent p.V164V 0.42 TCGA-38-4631-01 19 51532473 51532473 G A KLK12 Intron 0.46 TCGA-38-4631-01 19 53454041 53454041 T A ZNF816 Missense_Mutation p.R329S 0.25 tolerated(0.51) benign(0.001) TCGA-38-4631-01 19 53484207 53484207 G T ZNF702P RNA 0.19 TCGA-38-4631-01 19 53855101 53855101 C G ZNF845 Silent p.T391T 0.43 TCGA-38-4631-01 19 53952873 53952873 A T ZNF761 RNA 0.20 TCGA-38-4631-01 19 54401818 54401818 G T PRKCG Missense_Mutation p.G406V 0.46 tolerated(0.05) probably_damaging(0.946) TCGA-38-4631-01 19 54758731 54758731 A T LILRB5 Nonsense_Mutation p.Y374* 0.45 TCGA-38-4631-01 19 55014075 55014075 G - LAIR2 5'UTR 0.22 TCGA-38-4631-01 19 55748126 55748126 C A PPP6R1 Nonsense_Mutation p.E625* 0.23 TCGA-38-4631-01 19 56424392 56424392 T A NLRP13 Missense_Mutation p.Y264F 0.12 tolerated(0.06) possibly_damaging(0.545) TCGA-38-4631-01 19 56572782 56572782 C A NLRP5 Missense_Mutation p.P1164H 0.22 tolerated(0.12) benign(0.098) TCGA-38-4631-01 19 57640595 57640595 G T USP29 Silent p.L184L 0.26 TCGA-38-4631-01 19 57839611 57839611 G T ZNF543 Missense_Mutation p.G261W 0.15 deleterious(0) probably_damaging(1) TCGA-38-4631-01 19 58490843 58490843 T A ZNF606 Missense_Mutation p.Y402F 0.46 tolerated(0.36) benign(0.002) TCGA-38-4631-01 19 58572990 58572990 G T ZNF135 Nonsense_Mutation p.E38* 0.41 TCGA-38-4631-01 19 58724291 58724291 C T ZNF274 Silent p.L581L 0.15 TCGA-38-4631-01 19 58864391 58864391 G C A1BG Missense_Mutation p.F81L 0.17 deleterious(0.01) probably_damaging(1) TCGA-38-4631-01 19 5933469 5933469 C T RANBP3 Missense_Mutation p.R143Q 0.08 deleterious(0) probably_damaging(0.96) TCGA-38-4631-01 19 7083876 7083876 G A ZNF557 3'UTR 0.59 TCGA-38-4631-01 19 8808271 8808271 C A ACTL9 Missense_Mutation p.V261L 0.36 deleterious(0.02) benign(0.05) TCGA-38-4631-01 19 9060278 9060278 G T MUC16 Missense_Mutation p.D9056E 0.45 unknown(0) TCGA-38-4631-01 19 9072943 9072943 C A MUC16 Missense_Mutation p.V4835L 0.45 unknown(0) TCGA-38-4631-01 1 100588014 100588014 A C SASS6 Missense_Mutation p.V78G 0.09 deleterious(0) probably_damaging(0.965) TCGA-38-4631-01 1 102462382 102462382 G T OLFM3 5'UTR 0.28 TCGA-38-4631-01 1 103343713 103343713 T A COL11A1 Missense_Mutation p.K1761N 0.17 unknown(0) TCGA-38-4631-01 1 103412437 103412437 G T COL11A1 Missense_Mutation p.P1082T 0.17 unknown(0) TCGA-38-4631-01 1 103544219 103544219 G T COL11A1 Missense_Mutation p.D161E 0.14 probably_damaging(1) TCGA-38-4631-01 1 10431226 10431226 G T KIF1B Missense_Mutation p.D1572Y 0.40 deleterious(0.04) possibly_damaging(0.628) TCGA-38-4631-01 1 107973450 107973450 A T NTNG1 Missense_Mutation p.H389L 0.10 tolerated(0.06) benign(0.055) TCGA-38-4631-01 1 108303503 108303503 T A VAV3 Splice_Site p.X308_splice 0.21 TCGA-38-4631-01 1 108681711 108681711 C T SLC25A24 Silent p.L406L 0.34 TCGA-38-4631-01 1 110134684 110134684 G T GNAI3 Missense_Mutation p.E298D 0.18 tolerated(0.59) benign(0.02) TCGA-38-4631-01 1 110134687 110134687 A T GNAI3 Silent p.A299A 0.18 TCGA-38-4631-01 1 11272478 11272478 T C MTOR Missense_Mutation p.Y1151C 0.18 deleterious(0) possibly_damaging(0.72) TCGA-38-4631-01 1 11591678 11591678 G T PTCHD2 Nonsense_Mutation p.E1096* 0.34 TCGA-38-4631-01 1 11596643 11596643 T C PTCHD2 Missense_Mutation p.L1360P 0.30 tolerated(0.07) possibly_damaging(0.878) TCGA-38-4631-01 1 11596647 11596647 T G PTCHD2 Silent p.G1361G 0.31 TCGA-38-4631-01 1 117122426 117122426 A G IGSF3 Silent p.C994C 0.31 TCGA-38-4631-01 1 12328835 12328835 G C VPS13D Missense_Mutation p.R625P 0.31 probably_damaging(0.981) TCGA-38-4631-01 1 12907903 12907903 T C HNRNPCL1 Silent p.V80V 0.06 TCGA-38-4631-01 1 13936946 13936946 C G PDPN Missense_Mutation p.T165R 0.15 deleterious(0.01) possibly_damaging(0.891) TCGA-38-4631-01 1 153512581 153512581 C G S100A5 Silent p.L29L 0.12 TCGA-38-4631-01 1 15541749 15541749 G C TMEM51 Missense_Mutation p.G56R 0.30 deleterious(0) possibly_damaging(0.884) TCGA-38-4631-01 1 156812857 156812857 C T INSRR Missense_Mutation p.R1022Q 0.44 deleterious(0) probably_damaging(0.975) TCGA-38-4631-01 1 158592982 158592982 C - SPTA1 Frame_Shift_Del p.D1971Tfs*21 0.35 TCGA-38-4631-01 1 159277583 159277583 T C FCER1A Missense_Mutation p.V212A 0.17 deleterious(0.03) possibly_damaging(0.614) TCGA-38-4631-01 1 16464386 16464386 C A EPHA2 Missense_Mutation p.R425L 0.30 tolerated(0.12) benign(0.001) TCGA-38-4631-01 1 165532835 165532835 A T LRRC52 Missense_Mutation p.H239L 0.31 tolerated(0.22) benign(0.15) TCGA-38-4631-01 1 169080727 169080727 G T ATP1B1 Missense_Mutation p.A73S 0.37 tolerated(0.17) benign(0.239) TCGA-38-4631-01 1 16945464 16945464 C A RP5-1182A14.5 3'Flank 0.07 TCGA-38-4631-01 1 171306562 171306562 A G FMO4 Silent p.K416K 0.30 TCGA-38-4631-01 1 174417343 174417343 G T GPR52 Missense_Mutation p.G32C 0.16 deleterious(0) possibly_damaging(0.886) TCGA-38-4631-01 1 175956124 175956124 T A RFWD2 Silent p.T696T 0.36 TCGA-38-4631-01 1 177250308 177250308 C A BRINP2 Missense_Mutation p.L666M 0.12 tolerated(0.06) probably_damaging(0.997) TCGA-38-4631-01 1 180905361 180905361 C T KIAA1614 Silent p.S772S 0.36 TCGA-38-4631-01 1 185060780 185060780 A T RNF2 Missense_Mutation p.I53F 0.35 deleterious(0) possibly_damaging(0.692) TCGA-38-4631-01 1 186862291 186862291 G - PLA2G4A Frame_Shift_Del 0.12 TCGA-38-4631-01 1 190067568 190067568 G T BRINP3 Silent p.I627I 0.37 TCGA-38-4631-01 1 196706738 196706738 A C CFH Missense_Mutation p.E910D 0.16 tolerated(0.24) benign(0.022) TCGA-38-4631-01 1 196796100 196796100 G C CFHR1 Missense_Mutation p.R132P 0.31 tolerated(0.22) possibly_damaging(0.796) TCGA-38-4631-01 1 196876504 196876504 C T CFHR4 Silent p.F224F 0.16 TCGA-38-4631-01 1 196928028 196928028 C A CFHR2 Missense_Mutation p.Q211K 0.40 tolerated(0.16) benign(0.01) TCGA-38-4631-01 1 20302256 20302256 A T PLA2G2A Missense_Mutation p.Y125N 0.19 deleterious(0) probably_damaging(1) TCGA-38-4631-01 1 204198174 204198174 C A PLEKHA6 Missense_Mutation p.R881L 0.13 deleterious(0) possibly_damaging(0.682) TCGA-38-4631-01 1 205809437 205809437 G A PM20D1 Silent p.P353P 0.38 TCGA-38-4631-01 1 206653244 206653244 A G IKBKE Silent p.K405K 0.13 TCGA-38-4631-01 1 209974728 209974728 T A IRF6 Nonsense_Mutation p.K11* 0.37 TCGA-38-4631-01 1 215256727 215256727 T A KCNK2 5'UTR 0.15 TCGA-38-4631-01 1 216062061 216062061 A T USH2A Missense_Mutation p.W2644R 0.17 probably_damaging(1) TCGA-38-4631-01 1 216219923 216219923 C A USH2A Missense_Mutation p.V2059F 0.18 probably_damaging(0.985) TCGA-38-4631-01 1 21902372 21902372 G A ALPL Missense_Mutation p.V382I 0.06 deleterious(0.01) possibly_damaging(0.449) TCGA-38-4631-01 1 220232157 220232157 C A BPNT1 3'UTR 0.39 TCGA-38-4631-01 1 22333450 22333450 G A CELA3A Missense_Mutation p.G148S 0.32 deleterious(0.01) possibly_damaging(0.738) TCGA-38-4631-01 1 226923458 226923458 C G ITPKB Missense_Mutation p.A568P 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-38-4631-01 1 228596162 228596162 G C TRIM17 Missense_Mutation p.Q392E 0.22 tolerated(0.29) possibly_damaging(0.9) TCGA-38-4631-01 1 232943500 232943500 G T MAP10 Missense_Mutation p.G911W 0.19 deleterious(0) probably_damaging(1) TCGA-38-4631-01 1 233394783 233394783 C A PCNXL2 Silent p.P275P 0.60 TCGA-38-4631-01 1 237881823 237881823 T A RYR2 Splice_Site p.X3518_splice 0.12 TCGA-38-4631-01 1 237936818 237936818 A T RYR2 Splice_Site p.X3883_splice 0.37 TCGA-38-4631-01 1 240969437 240969437 C A RGS7 Intron 0.33 TCGA-38-4631-01 1 245582977 245582977 G A KIF26B Missense_Mutation p.A366T 0.17 tolerated(0.25) unknown(0) TCGA-38-4631-01 1 247150365 247150365 T A ZNF695 Silent p.T484T 0.38 TCGA-38-4631-01 1 247588321 247588321 C A NLRP3 Missense_Mutation p.Q526K 0.39 deleterious(0) probably_damaging(0.993) TCGA-38-4631-01 1 247695185 247695185 A T OR2C3 Missense_Mutation p.L210Q 0.24 deleterious(0) probably_damaging(0.919) TCGA-38-4631-01 1 247978138 247978138 C T OR14A16 Silent p.L298L 0.36 TCGA-38-4631-01 1 248308449 248308449 C A OR2M5 5'Flank 0.14 TCGA-38-4631-01 1 248366414 248366414 G T OR2M3 Silent p.L15L 0.14 TCGA-38-4631-01 1 248436676 248436676 C A OR2T33 Missense_Mutation p.W147C 0.19 deleterious(0) probably_damaging(1) TCGA-38-4631-01 1 248436752 248436752 G T OR2T33 Missense_Mutation p.A122E 0.06 deleterious(0) benign(0.307) TCGA-38-4631-01 1 248551620 248551621 - T OR2T6 Frame_Shift_Ins p.A239Cfs*34 0.16 TCGA-38-4631-01 1 248845177 248845177 T A OR14I1 Silent p.A143A 0.15 TCGA-38-4631-01 1 249144510 249144510 C A ZNF692 Nonsense_Mutation p.E492* 0.12 TCGA-38-4631-01 1 26371649 26371649 C A SLC30A2 Missense_Mutation p.G37V 0.24 tolerated(0.07) benign(0.012) TCGA-38-4631-01 1 26887237 26887237 G T RPS6KA1 Silent p.L421L 0.39 TCGA-38-4631-01 1 27100358 27100358 A T ARID1A Missense_Mutation p.Q1357L 0.30 unknown(0) TCGA-38-4631-01 1 31194360 31194360 G T MATN1 Silent p.I111I 0.22 TCGA-38-4631-01 1 3440803 3440803 G C MEGF6 Missense_Mutation p.D163E 0.29 deleterious(0.01) probably_damaging(0.987) TCGA-38-4631-01 1 36217085 36217085 T A CLSPN Missense_Mutation p.K598N 0.27 deleterious(0) probably_damaging(0.994) TCGA-38-4631-01 1 41304035 41304035 G T KCNQ4 Missense_Mutation p.C643F 0.25 tolerated(0.72) possibly_damaging(0.514) TCGA-38-4631-01 1 43108212 43108212 G T CCDC30 Missense_Mutation p.Q569H 0.29 deleterious(0) benign(0.409) TCGA-38-4631-01 1 55317863 55317863 C T DHCR24 3'UTR 0.24 TCGA-38-4631-01 1 6184629 6184629 G C CHD5 Missense_Mutation p.S1496C 0.12 deleterious(0.05) possibly_damaging(0.617) TCGA-38-4631-01 1 66833714 66833714 T A PDE4B Missense_Mutation p.V543D 0.12 deleterious(0) probably_damaging(1) TCGA-38-4631-01 1 70505179 70505179 G A LRRC7 Silent p.A1186A 0.18 TCGA-38-4631-01 1 70505385 70505385 C A LRRC7 Missense_Mutation p.T1255N 0.15 tolerated(0.66) benign(0.004) TCGA-38-4631-01 1 71418563 71418563 A T PTGER3 3'UTR 0.15 TCGA-38-4631-01 1 880905 880905 C A NOC2L Silent p.S682S 0.42 TCGA-38-4631-01 1 889421 889421 C A NOC2L Missense_Mutation p.R247L 0.33 deleterious(0.04) benign(0.015) TCGA-38-4631-01 1 89847391 89847391 A T GBP6 Missense_Mutation p.Q337L 0.13 tolerated(0.06) possibly_damaging(0.5) TCGA-38-4631-01 1 99418782 99418782 A T LPPR5 Nonsense_Mutation p.C155* 0.29 TCGA-38-4631-01 1 99772039 99772039 C A LPPR4 Missense_Mutation p.L589I 0.34 tolerated(0.2) benign(0.113) TCGA-38-4631-01 20 13858199 13858199 G T SEL1L2 Silent p.A331A 0.18 TCGA-38-4631-01 20 1629708 1629708 C A SIRPG Missense_Mutation p.M140I 0.21 deleterious(0.01) benign(0.046) TCGA-38-4631-01 20 17932182 17932182 C A SNX5 Missense_Mutation p.V191L 0.31 tolerated(0.36) benign(0.277) TCGA-38-4631-01 20 18297168 18297168 G T ZNF133 Missense_Mutation p.G557V 0.25 deleterious(0) probably_damaging(1) TCGA-38-4631-01 20 20582347 20582347 T C RALGAPA2 Missense_Mutation p.I728V 0.05 tolerated(0.53) benign(0.001) TCGA-38-4631-01 20 29976907 29976907 A T DEFB119 Missense_Mutation p.I63N 0.37 deleterious(0) probably_damaging(0.955) TCGA-38-4631-01 20 3127960 3127960 C A FASTKD5 Missense_Mutation p.R586L 0.28 deleterious(0) probably_damaging(0.999) TCGA-38-4631-01 20 3129681 3129681 T C FASTKD5 Silent p.R12R 0.45 TCGA-38-4631-01 20 31627309 31627309 C T BPIFB6 Missense_Mutation p.L353F 0.42 deleterious(0.02) probably_damaging(0.932) TCGA-38-4631-01 20 35128633 35128633 C T DLGAP4 Nonsense_Mutation p.R708* 0.38 TCGA-38-4631-01 20 35390863 35390863 C T DSN1 Splice_Site p.X197_splice 0.42 TCGA-38-4631-01 20 4202212 4202212 G C ADRA1D Nonsense_Mutation p.Y559* 0.16 TCGA-38-4631-01 20 42788285 42788285 C A JPH2 Missense_Mutation p.R381L 0.39 deleterious(0.01) possibly_damaging(0.821) TCGA-38-4631-01 20 43034844 43034844 G T HNF4A Missense_Mutation p.V88L 0.32 deleterious(0.05) benign(0.026) TCGA-38-4631-01 20 44170794 44170794 C T EPPIN Intron 0.29 TCGA-38-4631-01 20 44680367 44680367 G T SLC12A5 Silent p.V768V 0.16 TCGA-38-4631-01 20 50346457 50346457 C A ATP9A Silent p.L43L 0.26 TCGA-38-4631-01 20 51870965 51870965 G T TSHZ2 Missense_Mutation p.R323L 0.17 deleterious(0) probably_damaging(0.998) TCGA-38-4631-01 20 52193350 52193350 C A ZNF217 Silent p.P651P 0.49 TCGA-38-4631-01 20 54578972 54578972 T C CBLN4 Missense_Mutation p.M86V 0.15 deleterious(0.01) benign(0.058) TCGA-38-4631-01 20 56087660 56087660 A T CTCFL Nonsense_Mutation p.Y493* 0.20 TCGA-38-4631-01 20 56140911 56140911 G A PCK1 3'UTR 0.64 TCGA-38-4631-01 20 57485075 57485075 T C GNAS Silent p.A946A 0.14 TCGA-38-4631-01 20 57565975 57565975 G C NELFCD Missense_Mutation p.A285P 0.44 deleterious(0.04) probably_damaging(0.915) TCGA-38-4631-01 20 61512318 61512318 G A DIDO1 Missense_Mutation p.P1664S 0.17 possibly_damaging(0.754) TCGA-38-4631-01 20 62730101 62730101 G T OPRL1 Missense_Mutation p.K354N 0.40 deleterious(0.04) benign(0.384) TCGA-38-4631-01 21 10916476 10916476 C A TPTE Splice_Site p.X391_splice 0.11 TCGA-38-4631-01 21 10996093 10996093 C - TPTE RNA 0.11 TCGA-38-4631-01 21 15753637 15753637 C A HSPA13 Missense_Mutation p.V85L 0.30 tolerated(0.43) benign(0.001) TCGA-38-4631-01 21 28296446 28296446 G T ADAMTS5 Silent p.R907R 0.29 TCGA-38-4631-01 21 31655173 31655173 G T KRTAP24-1 Silent p.I26I 0.22 TCGA-38-4631-01 21 31691968 31691968 A T KRTAP26-1 Missense_Mutation p.L129H 0.15 tolerated(0.08) possibly_damaging(0.754) TCGA-38-4631-01 21 33651133 33651133 C A MIS18A Nonsense_Mutation p.E65* 0.50 TCGA-38-4631-01 21 34117882 34117882 T C PAXBP1 Intron 0.17 TCGA-38-4631-01 21 41239372 41239372 C A PCP4 5'UTR 0.26 TCGA-38-4631-01 21 42080435 42080435 G T DSCAM Nonsense_Mutation p.C102* 0.27 TCGA-38-4631-01 21 43863444 43863444 C A UBASH3A Missense_Mutation p.L552I 0.29 deleterious(0) probably_damaging(0.999) TCGA-38-4631-01 21 45522796 45522796 G A TRAPPC10 Missense_Mutation p.V1162I 0.30 tolerated(0.28) benign(0.16) TCGA-38-4631-01 21 45713743 45713743 C G AIRE Silent p.A450A 0.17 TCGA-38-4631-01 21 46330268 46330268 C T ITGB2 Silent p.T26T 0.10 TCGA-38-4631-01 22 17072821 17072821 G C CCT8L2 Missense_Mutation p.A207G 0.34 tolerated(0.33) benign(0.107) TCGA-38-4631-01 22 17073466 17073466 C T CCT8L2 5'UTR 0.26 TCGA-38-4631-01 22 19130301 19130301 C A DGCR14 Missense_Mutation p.R81L 0.19 deleterious(0) probably_damaging(0.999) TCGA-38-4631-01 22 20127706 20127706 T G ZDHHC8 Missense_Mutation p.V209G 0.03 deleterious(0.01) probably_damaging(0.998) TCGA-38-4631-01 22 21349315 21349315 G T LZTR1 Missense_Mutation p.G648C 0.90 deleterious(0.01) possibly_damaging(0.789) TCGA-38-4631-01 22 21380577 21380577 G T P2RX6 Missense_Mutation p.D363Y 0.07 tolerated(0.07) probably_damaging(0.999) TCGA-38-4631-01 22 22599662 22599662 G T VPREB1 Missense_Mutation p.M117I 0.36 tolerated(0.9) benign(0.143) TCGA-38-4631-01 22 24582315 24582315 G T SUSD2 Missense_Mutation p.G525V 0.26 tolerated(0.3) benign(0.219) TCGA-38-4631-01 22 24939994 24939994 C A GUCD1 Silent p.V148V 0.26 TCGA-38-4631-01 22 28192956 28192956 C - MN1 Frame_Shift_Del p.Q1193Rfs*19 0.38 TCGA-38-4631-01 22 31661989 31661989 G C LIMK2 Silent p.L283L 0.26 TCGA-38-4631-01 22 32909545 32909545 G T SYN3 3'UTR 0.52 TCGA-38-4631-01 22 35478514 35478514 G A ISX Missense_Mutation p.G78E 0.20 tolerated(1) benign(0.002) TCGA-38-4631-01 22 36055359 36055359 G T APOL6 Missense_Mutation p.A250S 0.19 tolerated(0.38) benign(0.14) TCGA-38-4631-01 22 38468617 38468617 G A PICK1 Silent p.P230P 0.24 TCGA-38-4631-01 22 38823948 38823948 C A KCNJ4 Missense_Mutation p.A64S 0.41 tolerated(0.05) benign(0.107) TCGA-38-4631-01 22 43576790 43576790 C T TTLL12 Silent p.E168E 0.34 TCGA-38-4631-01 22 46795763 46795763 C A CELSR1 Missense_Mutation p.G1755C 0.26 deleterious(0) probably_damaging(0.996) TCGA-38-4631-01 22 46931390 46931390 C A CELSR1 Missense_Mutation p.D560Y 0.20 deleterious(0) probably_damaging(1) TCGA-38-4631-01 22 50197939 50197939 G A BRD1 Silent p.Y479Y 0.25 TCGA-38-4631-01 2 101967402 101967402 C A CREG2 Missense_Mutation p.V286F 0.21 deleterious(0) possibly_damaging(0.736) TCGA-38-4631-01 2 103090302 103090302 T A SLC9A4 Silent p.S28S 0.23 TCGA-38-4631-01 2 109067569 109067569 G C GCC2 Splice_Site p.X50_splice 0.22 TCGA-38-4631-01 2 109380142 109380142 A G RANBP2 Silent p.P1049P 0.12 TCGA-38-4631-01 2 109408185 109408185 A G CCDC138 Silent p.E107E 0.22 TCGA-38-4631-01 2 109415040 109415040 G T CCDC138 Nonsense_Mutation p.E245* 0.22 TCGA-38-4631-01 2 118753904 118753904 T A CCDC93 Missense_Mutation p.E133V 0.26 deleterious(0) probably_damaging(0.927) TCGA-38-4631-01 2 122004483 122004483 G A TFCP2L1 Nonsense_Mutation p.R190* 0.22 TCGA-38-4631-01 2 125261947 125261947 C A CNTNAP5 Missense_Mutation p.L380M 0.38 deleterious(0.01) benign(0.373) TCGA-38-4631-01 2 125281974 125281974 G A CNTNAP5 Silent p.P473P 0.39 TCGA-38-4631-01 2 128075837 128075837 C G MAP3K2 Missense_Mutation p.G368R 0.12 deleterious(0) probably_damaging(0.93) TCGA-38-4631-01 2 128367543 128367543 G T MYO7B Silent p.L1048L 0.44 TCGA-38-4631-01 2 130737817 130737817 G T RAB6C Missense_Mutation p.Q43H 0.31 deleterious_low_confidence(0.04) benign(0.318) TCGA-38-4631-01 2 138169367 138169367 G - THSD7B Frame_Shift_Del p.G962Afs*7 0.20 TCGA-38-4631-01 2 141291702 141291702 T A LRP1B Missense_Mutation p.R2550S 0.30 possibly_damaging(0.537) TCGA-38-4631-01 2 145187456 145187456 A G ZEB2 Missense_Mutation p.S71P 0.19 tolerated(0.11) benign(0.001) TCGA-38-4631-01 2 152432208 152432208 C T NEB Splice_Site p.X5671_splice 0.29 TCGA-38-4631-01 2 157426037 157426037 G C GPD2 Missense_Mutation p.G488A 0.13 deleterious(0.02) possibly_damaging(0.899) TCGA-38-4631-01 2 158142619 158142619 A T GALNT5 Missense_Mutation p.R572W 0.23 deleterious(0) probably_damaging(1) TCGA-38-4631-01 2 160194283 160194283 C A BAZ2B Missense_Mutation p.G1819C 0.22 probably_damaging(0.996) TCGA-38-4631-01 2 16085778 16085778 G T MYCN Silent p.L318L 0.38 TCGA-38-4631-01 2 162895493 162895493 T A DPP4 Missense_Mutation p.Q153L 0.33 deleterious(0) probably_damaging(1) TCGA-38-4631-01 2 166901690 166901690 G A SCN1A Nonsense_Mutation p.Q509* 0.20 TCGA-38-4631-01 2 167060953 167060953 T A SCN9A Missense_Mutation p.M1463L 0.16 deleterious(0.04) benign(0.031) TCGA-38-4631-01 2 167168061 167168061 C A SCN9A Missense_Mutation p.G69V 0.30 tolerated(0.06) probably_damaging(0.932) TCGA-38-4631-01 2 168107344 168107344 G A XIRP2 Missense_Mutation p.D3148N 0.24 benign(0.013) TCGA-38-4631-01 2 170042416 170042416 G T LRP2 Silent p.R3148R 0.34 TCGA-38-4631-01 2 172952919 172952919 C A DLX1 Silent p.I234I 0.26 TCGA-38-4631-01 2 17830709 17830709 C A VSNL1 Silent p.A65A 0.22 TCGA-38-4631-01 2 179408023 179408023 G T TTN Missense_Mutation p.P32226Q 0.13 TCGA-38-4631-01 2 179413591 179413591 G C TTN Missense_Mutation p.T30921R 0.19 TCGA-38-4631-01 2 179432942 179432942 G T TTN Missense_Mutation p.Q25973K 0.26 TCGA-38-4631-01 2 179434396 179434396 C A TTN Missense_Mutation p.G25488V 0.24 TCGA-38-4631-01 2 179529215 179529215 G T TTN Silent p.P12084P 0.27 TCGA-38-4631-01 2 179529216 179529216 G T TTN Missense_Mutation p.P12084H 0.27 TCGA-38-4631-01 2 179594234 179594234 C A TTN Nonsense_Mutation p.E6217* 0.29 TCGA-38-4631-01 2 179610535 179610535 G T TTN Intron 0.15 TCGA-38-4631-01 2 179614934 179614934 G T TTN Intron 0.30 TCGA-38-4631-01 2 182344887 182344887 A T ITGA4 Silent p.P216P 0.30 TCGA-38-4631-01 2 183586760 183586760 G A DNAJC10 Missense_Mutation p.D126N 0.17 deleterious(0) probably_damaging(1) TCGA-38-4631-01 2 186673098 186673098 C T FSIP2 Silent p.F6444F 0.26 TCGA-38-4631-01 2 187371499 187371499 A G ZC3H15 Silent p.V342V 0.36 TCGA-38-4631-01 2 189599535 189599535 G C DIRC1 Missense_Mutation p.P38R 0.21 tolerated_low_confidence(0.36) possibly_damaging(0.904) TCGA-38-4631-01 2 189868867 189868867 C A COL3A1 Missense_Mutation p.P941T 0.24 probably_damaging(0.966) TCGA-38-4631-01 2 189917528 189917528 C G COL5A2 Missense_Mutation p.G888R 0.12 unknown(0) TCGA-38-4631-01 2 197002295 197002295 C T STK17B Missense_Mutation p.G332E 0.27 deleterious(0.05) probably_damaging(0.968) TCGA-38-4631-01 2 197298149 197298149 C G HECW2 5'UTR 0.33 TCGA-38-4631-01 2 197629201 197629201 T A GTF3C3 3'UTR 0.20 TCGA-38-4631-01 2 197943539 197943539 C T ANKRD44 Splice_Site p.X488_splice 0.27 TCGA-38-4631-01 2 197943540 197943540 T G ANKRD44 Splice_Site p.X488_splice 0.26 TCGA-38-4631-01 2 212248511 212248511 G A ERBB4 Silent p.T1252T 0.26 TCGA-38-4631-01 2 21235326 21235326 C A APOB Missense_Mutation p.D1472Y 0.45 probably_damaging(0.998) TCGA-38-4631-01 2 212530091 212530091 G T ERBB4 Missense_Mutation p.P610T 0.24 tolerated(0.23) benign(0) TCGA-38-4631-01 2 213914437 213914437 C A IKZF2 Missense_Mutation p.V192L 0.28 deleterious(0.01) possibly_damaging(0.586) TCGA-38-4631-01 2 219204767 219204767 C G PNKD Missense_Mutation p.P123R 0.32 tolerated(0.09) probably_damaging(0.994) TCGA-38-4631-01 2 220098546 220098546 A C ANKZF1 Missense_Mutation p.K310T 0.23 deleterious(0.01) benign(0.142) TCGA-38-4631-01 2 226446931 226446931 C T NYAP2 Silent p.A266A 0.29 TCGA-38-4631-01 2 228119376 228119376 T A COL4A3 Missense_Mutation p.L278Q 0.27 probably_damaging(0.929) TCGA-38-4631-01 2 228882763 228882763 G C SPHKAP Missense_Mutation p.T936R 0.14 deleterious(0) probably_damaging(0.985) TCGA-38-4631-01 2 234746241 234746242 - A HJURP Frame_Shift_Ins p.L743Ffs*4 0.16 TCGA-38-4631-01 2 238287867 238287867 T C COL6A3 Missense_Mutation p.K637E 0.10 possibly_damaging(0.718) TCGA-38-4631-01 2 240985276 240985276 A T OR6B3 Missense_Mutation p.W72R 0.23 deleterious(0) possibly_damaging(0.635) TCGA-38-4631-01 2 241622087 241622087 C G AQP12B Silent p.T56T 0.12 TCGA-38-4631-01 2 25190085 25190085 G T DNAJC27 Silent p.V55V 0.39 TCGA-38-4631-01 2 31484546 31484546 A T EHD3 Silent p.S349S 0.21 TCGA-38-4631-01 2 32613998 32613998 C T BIRC6 Missense_Mutation p.R276C 0.19 benign(0.425) TCGA-38-4631-01 2 33484662 33484662 T A LTBP1 Silent p.T801T 0.26 TCGA-38-4631-01 2 36669769 36669769 G T CRIM1 Missense_Mutation p.D254Y 0.39 deleterious(0) probably_damaging(0.996) TCGA-38-4631-01 2 43797577 43797577 C A THADA Nonsense_Mutation p.E713* 0.44 TCGA-38-4631-01 2 44586880 44586880 C A PREPL 5'UTR 0.34 TCGA-38-4631-01 2 46574200 46574200 C T EPAS1 Missense_Mutation p.S72L 0.17 deleterious(0) benign(0.059) TCGA-38-4631-01 2 48809666 48809666 G T STON1-GTF2A1L Missense_Mutation p.V632L 0.18 deleterious(0.03) possibly_damaging(0.566) TCGA-38-4631-01 2 48915276 48915276 G A LHCGR Nonsense_Mutation p.R554* 0.16 TCGA-38-4631-01 2 49189750 49189750 G A FSHR 3'UTR 0.70 TCGA-38-4631-01 2 50733715 50733715 A T NRXN1 Missense_Mutation p.N845K 0.50 deleterious(0) probably_damaging(0.995) TCGA-38-4631-01 2 51254933 51254933 G A NRXN1 Missense_Mutation p.P160L 0.50 tolerated(0.17) benign(0.09) TCGA-38-4631-01 2 51254934 51254934 G T NRXN1 Missense_Mutation p.P160T 0.50 tolerated(0.16) benign(0.054) TCGA-38-4631-01 2 54872432 54872432 C T SPTBN1 Silent p.L1446L 0.18 TCGA-38-4631-01 2 69736519 69736519 C A AAK1 Missense_Mutation p.G617V 0.33 tolerated(0.06) probably_damaging(0.997) TCGA-38-4631-01 2 70096905 70096905 A G GMCL1 Missense_Mutation p.T425A 0.36 tolerated(0.07) benign(0.119) TCGA-38-4631-01 2 71148364 71148364 G T VAX2 Silent p.V128V 0.20 TCGA-38-4631-01 2 73678725 73678725 G T ALMS1 Missense_Mutation p.V1690F 0.14 benign(0.118) TCGA-38-4631-01 2 77745528 77745528 C - LRRTM4 Frame_Shift_Del p.K489Nfs*34 0.28 TCGA-38-4631-01 2 85049050 85049050 G T TRABD2A Silent p.P454P 0.36 TCGA-38-4631-01 2 85894864 85894864 G A SFTPB Nonsense_Mutation p.Q57* 0.39 TCGA-38-4631-01 2 89417278 89417278 C A IGKV1-17 Missense_Mutation p.G11W 0.21 tolerated(0.08) benign(0.409) TCGA-38-4631-01 2 90108923 90108923 C A IGKV6D-41 Missense_Mutation p.A63D 0.34 deleterious(0.02) benign(0.195) TCGA-38-4631-01 2 96936996 96936996 G T CIAO1 Silent p.V309V 0.34 TCGA-38-4631-01 2 96950178 96950178 C A SNRNP200 Missense_Mutation p.R1437L 0.37 deleterious(0) probably_damaging(0.996) TCGA-38-4631-01 2 98736075 98736075 C T VWA3B Missense_Mutation p.R131W 0.09 deleterious(0) probably_damaging(0.999) TCGA-38-4631-01 2 99242232 99242232 C A MGAT4A Missense_Mutation p.R512L 0.16 deleterious(0) possibly_damaging(0.856) TCGA-38-4631-01 2 99342815 99342815 G A MGAT4A 5'UTR 0.35 TCGA-38-4631-01 3 100645145 100645145 C - ABI3BP Splice_Site p.X94_splice 0.32 TCGA-38-4631-01 3 119533825 119533825 G T NR1I2 Splice_Site p.X304_splice 0.24 TCGA-38-4631-01 3 119900182 119900182 G T GPR156 Nonsense_Mutation p.Y241* 0.20 TCGA-38-4631-01 3 122629686 122629686 C G SEMA5B Splice_Site p.X1153_splice 0.56 TCGA-38-4631-01 3 123166346 123166346 G T ADCY5 Silent p.A349A 0.28 TCGA-38-4631-01 3 126114802 126114802 A G CCDC37 5'UTR 0.22 TCGA-38-4631-01 3 126270897 126270897 G T C3orf22 Missense_Mutation p.T53K 0.14 tolerated(1) benign(0.087) TCGA-38-4631-01 3 129239079 129239079 C T IFT122 Missense_Mutation p.R1284C 0.38 deleterious(0) probably_damaging(1) TCGA-38-4631-01 3 130188091 130188091 G T COL6A5 Missense_Mutation p.A2415S 0.25 deleterious(0.01) probably_damaging(0.945) TCGA-38-4631-01 3 130290119 130290119 C G COL6A6 Silent p.P953P 0.34 TCGA-38-4631-01 3 130427168 130427168 C A PIK3R4 Missense_Mutation p.V834F 0.08 tolerated(0.42) benign(0.19) TCGA-38-4631-01 3 130435261 130435261 A C PIK3R4 Silent p.L770L 0.53 TCGA-38-4631-01 3 132075604 132075604 G T ACPP Missense_Mutation p.S348I 0.05 tolerated(0.06) benign(0.017) TCGA-38-4631-01 3 132407565 132407565 A T NPHP3 Silent p.A1018A 0.09 TCGA-38-4631-01 3 13360750 13360750 C A NUP210 Missense_Mutation p.G1820V 0.56 deleterious(0.01) benign(0.12) TCGA-38-4631-01 3 136701172 136701172 A G IL20RB Missense_Mutation p.H129R 0.24 tolerated(0.55) benign(0.002) TCGA-38-4631-01 3 140265370 140265370 C A CLSTN2 Silent p.T507T 0.29 TCGA-38-4631-01 3 1444003 1444003 T A CNTN6 Missense_Mutation p.I940N 0.32 deleterious(0) probably_damaging(0.954) TCGA-38-4631-01 3 147128064 147128064 G C ZIC1 Missense_Mutation p.E55D 0.09 tolerated(1) benign(0.002) TCGA-38-4631-01 3 147128846 147128846 C G ZIC1 Missense_Mutation p.S316C 0.42 deleterious(0) possibly_damaging(0.905) TCGA-38-4631-01 3 14799156 14799156 G T C3orf20 Missense_Mutation p.R740L 0.48 tolerated(0.13) benign(0.438) TCGA-38-4631-01 3 148614351 148614351 A T CPA3 Missense_Mutation p.I371F 0.21 deleterious(0) probably_damaging(0.996) TCGA-38-4631-01 3 151156246 151156246 G A IGSF10 Silent p.L2035L 0.18 TCGA-38-4631-01 3 151162958 151162958 G T IGSF10 Missense_Mutation p.T1604N 0.18 tolerated(0.08) benign(0.014) TCGA-38-4631-01 3 151162966 151162966 G T IGSF10 Silent p.S1601S 0.17 TCGA-38-4631-01 3 154802043 154802043 C A MME Silent p.I29I 0.28 TCGA-38-4631-01 3 154802044 154802044 A G MME Missense_Mutation p.S30G 0.29 tolerated(1) benign(0.001) TCGA-38-4631-01 3 158522150 158522150 A T MFSD1 Missense_Mutation p.Q118L 0.32 tolerated(0.17) benign(0.011) TCGA-38-4631-01 3 164737500 164737500 G A SI Missense_Mutation p.R1105C 0.07 deleterious(0) probably_damaging(0.976) TCGA-38-4631-01 3 172065095 172065095 A C FNDC3B Missense_Mutation p.T820P 0.28 tolerated(0.09) benign(0.001) TCGA-38-4631-01 3 172065099 172065099 G T FNDC3B Missense_Mutation p.R821L 0.27 tolerated(0.2) benign(0.001) TCGA-38-4631-01 3 179291164 179291164 C A ACTL6A Missense_Mutation p.D95E 0.07 tolerated(0.07) possibly_damaging(0.734) TCGA-38-4631-01 3 33906811 33906811 C T PDCD6IP Missense_Mutation p.P779L 0.29 deleterious(0.01) possibly_damaging(0.908) TCGA-38-4631-01 3 39942313 39942313 G C MYRIP Silent p.G2G 0.54 TCGA-38-4631-01 3 40529172 40529172 C A ZNF619 Missense_Mutation p.Q431K 0.57 tolerated(0.05) benign(0) TCGA-38-4631-01 3 46723032 46723032 C G ALS2CL Missense_Mutation p.C411S 0.64 tolerated(0.24) possibly_damaging(0.633) TCGA-38-4631-01 3 47158147 47158147 C A SETD2 Nonsense_Mutation p.E1518* 0.42 TCGA-38-4631-01 3 47870539 47870539 C T DHX30 Missense_Mutation p.P94L 0.42 deleterious(0) probably_damaging(0.999) TCGA-38-4631-01 3 52432999 52432999 T A DNAH1 Missense_Mutation p.W4075R 0.36 probably_damaging(1) TCGA-38-4631-01 3 53321478 53321478 C T DCP1A 3'UTR 0.67 TCGA-38-4631-01 3 53925857 53925857 C A SELK 5'UTR 0.38 TCGA-38-4631-01 3 62467524 62467524 G T CADPS Missense_Mutation p.P1016H 0.48 deleterious(0.04) possibly_damaging(0.893) TCGA-38-4631-01 3 62535709 62535709 C A CADPS Missense_Mutation p.R612L 0.54 tolerated(0.08) benign(0.404) TCGA-38-4631-01 3 74334493 74334493 A G CNTN3 Silent p.P889P 0.24 TCGA-38-4631-01 3 74411127 74411127 C G CNTN3 Silent p.L426L 0.48 TCGA-38-4631-01 3 74413689 74413689 G T CNTN3 Missense_Mutation p.S381Y 0.24 deleterious(0.05) probably_damaging(0.987) TCGA-38-4631-01 3 97852271 97852272 - A OR5H1 Frame_Shift_Ins p.H244Qfs*26 0.28 TCGA-38-4631-01 3 98073296 98073296 A G OR5K4 Missense_Mutation p.Y200C 0.18 deleterious(0.02) benign(0.049) TCGA-38-4631-01 3 98188804 98188804 C A OR5K1 Missense_Mutation p.N128K 0.52 tolerated(0.54) benign(0.001) TCGA-38-4631-01 4 109895542 109895542 T A COL25A1 Missense_Mutation p.Q158L 0.33 tolerated(0.36) unknown(0) TCGA-38-4631-01 4 110223216 110223216 T C COL25A1 5'UTR 0.22 TCGA-38-4631-01 4 110452656 110452656 G T SEC24B Missense_Mutation p.R1123M 0.17 deleterious(0) probably_damaging(0.999) TCGA-38-4631-01 4 113332985 113332985 G C ALPK1 Silent p.A93A 0.20 TCGA-38-4631-01 4 121774658 121774658 T A PRDM5 Missense_Mutation p.D72V 0.05 deleterious(0) possibly_damaging(0.807) TCGA-38-4631-01 4 126336650 126336650 G C FAT4 Missense_Mutation p.A2178P 0.14 probably_damaging(0.994) TCGA-38-4631-01 4 126369620 126369620 C T FAT4 Silent p.S2483S 0.10 TCGA-38-4631-01 4 126370085 126370085 G T FAT4 Missense_Mutation p.W2638C 0.42 probably_damaging(1) TCGA-38-4631-01 4 126373104 126373104 G A FAT4 Missense_Mutation p.D3645N 0.41 probably_damaging(0.998) TCGA-38-4631-01 4 144135716 144135716 A T USP38 Missense_Mutation p.R863W 0.31 deleterious(0) probably_damaging(0.999) TCGA-38-4631-01 4 160264211 160264211 A T RAPGEF2 Missense_Mutation p.D839V 0.12 deleterious(0) probably_damaging(0.999) TCGA-38-4631-01 4 164271759 164271759 G T NPY5R Missense_Mutation p.V112F 0.11 deleterious(0.01) benign(0.105) TCGA-38-4631-01 4 174169425 174169425 G C GALNT7 Missense_Mutation p.E141Q 0.35 tolerated(0.1) benign(0.258) TCGA-38-4631-01 4 175898483 175898483 G T ADAM29 Nonsense_Mutation p.E603* 0.16 TCGA-38-4631-01 4 183601430 183601430 C A TENM3 Missense_Mutation p.H523N 0.46 tolerated(0.5) benign(0.403) TCGA-38-4631-01 4 185552920 185552920 T A CASP3 Missense_Mutation p.Q161L 0.08 deleterious(0) possibly_damaging(0.843) TCGA-38-4631-01 4 187454826 187454826 C A MTNR1A 3'UTR 0.12 TCGA-38-4631-01 4 189068508 189068508 A C TRIML1 Silent p.S463S 0.33 TCGA-38-4631-01 4 22749027 22749027 G T GBA3 Missense_Mutation p.G132V 0.36 deleterious(0) probably_damaging(1) TCGA-38-4631-01 4 25675965 25675965 G T SLC34A2 Missense_Mutation p.V422F 0.34 deleterious(0.02) possibly_damaging(0.873) TCGA-38-4631-01 4 26483736 26483736 G T CCKAR Missense_Mutation p.L271M 0.22 deleterious(0.02) benign(0.292) TCGA-38-4631-01 4 2826407 2826407 A C SH3BP2 Missense_Mutation p.K160Q 0.39 deleterious(0.01) possibly_damaging(0.535) TCGA-38-4631-01 4 42895638 42895638 C T GRXCR1 Silent p.L119L 0.44 TCGA-38-4631-01 4 46252268 46252268 G C GABRA2 3'UTR 0.53 TCGA-38-4631-01 4 46252334 46252334 G T GABRA2 Silent p.V449V 0.11 TCGA-38-4631-01 4 47556860 47556860 A G ATP10D Missense_Mutation p.I585V 0.04 tolerated(0.66) benign(0.002) TCGA-38-4631-01 4 47559954 47559954 G C ATP10D Missense_Mutation p.G700R 0.46 tolerated(0.56) benign(0.004) TCGA-38-4631-01 4 5016865 5016865 G T CYTL1 3'UTR 0.22 TCGA-38-4631-01 4 54439849 54439849 G C LNX1 Missense_Mutation p.F107L 0.42 tolerated(0.14) probably_damaging(0.993) TCGA-38-4631-01 4 55981512 55981512 T C KDR Missense_Mutation p.K142R 0.41 tolerated(0.7) possibly_damaging(0.451) TCGA-38-4631-01 4 59439 59439 G T ZNF595 Silent p.L40L 0.06 TCGA-38-4631-01 4 68964603 68964603 A G TMPRSS11F Splice_Site p.X55_splice 0.38 TCGA-38-4631-01 4 70156417 70156417 C A UGT2B28 Missense_Mutation p.P400T 0.23 tolerated(0.11) benign(0.321) TCGA-38-4631-01 4 70156418 70156418 C A UGT2B28 Missense_Mutation p.P400H 0.23 tolerated(0.42) benign(0.06) TCGA-38-4631-01 4 71200971 71200971 A T CABS1 Missense_Mutation p.K72M 0.44 deleterious(0) probably_damaging(0.979) TCGA-38-4631-01 4 77817998 77817998 G T SOWAHB Missense_Mutation p.F335L 0.24 deleterious(0.01) benign(0.153) TCGA-38-4631-01 4 79399131 79399131 G C FRAS1 Missense_Mutation p.D2672H 0.45 probably_damaging(0.995) TCGA-38-4631-01 4 79503387 79503387 G T ANXA3 Silent p.V85V 0.11 TCGA-38-4631-01 4 80328582 80328582 C T GK2 Missense_Mutation p.G258E 0.13 deleterious(0) probably_damaging(1) TCGA-38-4631-01 4 8467229 8467229 G T TRMT44 Missense_Mutation p.G479C 0.41 deleterious(0) benign(0.222) TCGA-38-4631-01 4 8589163 8589163 T A GPR78 3'UTR 0.20 TCGA-38-4631-01 4 86844845 86844845 C T ARHGAP24 Missense_Mutation p.L105F 0.12 deleterious(0) probably_damaging(0.998) TCGA-38-4631-01 4 87028474 87028474 C A MAPK10 Missense_Mutation p.V90L 0.12 deleterious(0.03) benign(0.065) TCGA-38-4631-01 4 88533716 88533716 G T DSPP Silent p.G126G 0.16 TCGA-38-4631-01 4 88766498 88766498 G T MEPE Missense_Mutation p.A160S 0.11 tolerated(0.21) benign(0.307) TCGA-38-4631-01 5 102260668 102260668 G T PAM Missense_Mutation p.D122Y 0.49 deleterious(0.02) probably_damaging(0.995) TCGA-38-4631-01 5 10227695 10227695 C G FAM173B Missense_Mutation p.R187P 0.21 deleterious(0) probably_damaging(0.998) TCGA-38-4631-01 5 110407739 110407739 C A TSLP Missense_Mutation p.L51M 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-38-4631-01 5 112178228 112178228 G T APC Missense_Mutation p.A2313S 0.42 benign(0.002) TCGA-38-4631-01 5 11384964 11384964 G T CTNND2 Silent p.R330R 0.41 TCGA-38-4631-01 5 115838024 115838024 C A SEMA6A Splice_Site p.X34_splice 0.43 TCGA-38-4631-01 5 126732373 126732373 G - MEGF10 Frame_Shift_Del p.G188Vfs*148 0.26 TCGA-38-4631-01 5 126734443 126734443 G T MEGF10 Silent p.V245V 0.37 TCGA-38-4631-01 5 126771052 126771052 G A MEGF10 Splice_Site p.X659_splice 0.39 TCGA-38-4631-01 5 127648464 127648464 G T FBN2 Missense_Mutation p.L1581M 0.45 tolerated(0.06) probably_damaging(0.992) TCGA-38-4631-01 5 127712525 127712525 G C FBN2 Missense_Mutation p.T624S 0.42 tolerated(0.3) benign(0.241) TCGA-38-4631-01 5 128844829 128844829 G T ADAMTS19 Missense_Mutation p.M263I 0.49 tolerated(0.19) benign(0.004) TCGA-38-4631-01 5 129520233 129520233 G C CHSY3 Missense_Mutation p.W466C 0.41 deleterious(0) probably_damaging(1) TCGA-38-4631-01 5 140181958 140181958 C T PCDHA3 Silent p.H392H 0.46 TCGA-38-4631-01 5 140745167 140745167 G C PCDHGA5 Missense_Mutation p.V424L 0.47 deleterious_low_confidence(0) possibly_damaging(0.557) TCGA-38-4631-01 5 140746231 140746231 G T PCDHGA5 Silent p.T778T 0.13 TCGA-38-4631-01 5 140754620 140754620 G T PCDHGA6 Missense_Mutation p.G324W 0.42 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-38-4631-01 5 15616169 15616169 G C FBXL7 Missense_Mutation p.A39P 0.27 tolerated(0.3) probably_damaging(0.99) TCGA-38-4631-01 5 156751011 156751011 G T CYFIP2 Missense_Mutation p.G559V 0.48 tolerated(0.1) benign(0.035) TCGA-38-4631-01 5 161117360 161117360 G T GABRA6 Splice_Site p.X276_splice 0.17 TCGA-38-4631-01 5 167850650 167850650 A G WWC1 Missense_Mutation p.T463A 0.47 deleterious(0) possibly_damaging(0.899) TCGA-38-4631-01 5 170235647 170235647 T C GABRP Silent p.N241N 0.13 TCGA-38-4631-01 5 175959138 175959138 G A RNF44 Missense_Mutation p.S55F 0.57 tolerated_low_confidence(0.69) possibly_damaging(0.541) TCGA-38-4631-01 5 179290820 179290820 C G TBC1D9B Silent p.V1127V 0.43 TCGA-38-4631-01 5 180338529 180338529 C A BTNL8 Silent p.T196T 0.49 TCGA-38-4631-01 5 180377625 180377625 G A BTNL8 3'UTR 0.27 TCGA-38-4631-01 5 19473591 19473591 G T CDH18 Missense_Mutation p.T706N 0.27 tolerated(0.52) benign(0.037) TCGA-38-4631-01 5 21459682 21459682 G T GUSBP1 RNA 0.09 TCGA-38-4631-01 5 34998786 34998786 A C AGXT2 3'UTR 0.21 TCGA-38-4631-01 5 38493779 38493779 G T LIFR Missense_Mutation p.S665Y 0.17 tolerated(0.06) probably_damaging(0.968) TCGA-38-4631-01 5 40950059 40950059 G T C7 Missense_Mutation p.V346F 0.43 tolerated(0.95) benign(0.001) TCGA-38-4631-01 5 457103 457103 G T EXOC3 Silent p.T382T 0.49 TCGA-38-4631-01 5 50111265 50111265 G T PARP8 Splice_Site p.X526_splice 0.38 TCGA-38-4631-01 5 52781807 52781807 G T FST Nonsense_Mutation p.E327* 0.35 TCGA-38-4631-01 5 54567931 54567931 T A DHX29 Nonsense_Mutation p.R950* 0.62 TCGA-38-4631-01 5 5461256 5461256 T C KIAA0947 Silent p.T603T 0.32 TCGA-38-4631-01 5 58273027 58273027 G T PDE4D Silent p.V566V 0.34 TCGA-38-4631-01 6 100395640 100395640 G A MCHR2 Silent p.D130D 0.37 TCGA-38-4631-01 6 111695587 111695587 C G REV3L Missense_Mutation p.C1324S 0.09 tolerated_low_confidence(1) benign(0.001) TCGA-38-4631-01 6 114279812 114279812 C A HDAC2 Splice_Site p.X95_splice 0.28 TCGA-38-4631-01 6 117609599 117609599 C A ROS1 3'UTR 0.30 TCGA-38-4631-01 6 121769099 121769099 G A GJA1 Missense_Mutation p.S369N 0.24 tolerated(0.21) possibly_damaging(0.785) TCGA-38-4631-01 6 126319418 126319418 T C TRMT11 Missense_Mutation p.F115S 0.13 deleterious(0) possibly_damaging(0.855) TCGA-38-4631-01 6 131247753 131247753 C A EPB41L2 Nonsense_Mutation p.E268* 0.14 TCGA-38-4631-01 6 133004338 133004338 G T VNN1 Missense_Mutation p.Q495K 0.20 tolerated_low_confidence(0.53) benign(0.08) TCGA-38-4631-01 6 133044911 133044911 G C VNN3 3'UTR 0.28 TCGA-38-4631-01 6 135250221 135250221 C A ALDH8A1 Missense_Mutation p.A328S 0.15 deleterious(0.02) probably_damaging(0.986) TCGA-38-4631-01 6 138584671 138584671 T A KIAA1244 Missense_Mutation p.L684H 0.11 deleterious(0) probably_damaging(0.999) TCGA-38-4631-01 6 139569031 139569031 C A TXLNB Nonsense_Mutation p.G365* 0.35 TCGA-38-4631-01 6 143605319 143605319 G T AIG1 Nonsense_Mutation p.G158* 0.26 TCGA-38-4631-01 6 144416564 144416564 G A SF3B5 Missense_Mutation p.A24V 0.08 deleterious(0) possibly_damaging(0.82) TCGA-38-4631-01 6 151939299 151939299 G A CCDC170 3'UTR 0.11 TCGA-38-4631-01 6 154410984 154410984 C A OPRM1 Missense_Mutation p.T198N 0.38 deleterious(0) probably_damaging(0.997) TCGA-38-4631-01 6 157222534 157222534 G T ARID1B Missense_Mutation p.G601C 0.08 probably_damaging(0.952) TCGA-38-4631-01 6 170627610 170627610 C A FAM120B Missense_Mutation p.P378T 0.34 tolerated(0.27) possibly_damaging(0.574) TCGA-38-4631-01 6 17688816 17688816 T C NUP153 Missense_Mutation p.N49D 0.09 deleterious(0.01) possibly_damaging(0.65) TCGA-38-4631-01 6 25652562 25652562 C A SCGN 5'UTR 0.41 TCGA-38-4631-01 6 29012594 29012594 T A OR2W1 Missense_Mutation p.Y120F 0.41 tolerated(0.25) possibly_damaging(0.824) TCGA-38-4631-01 6 31696949 31696949 C A DDAH2 5'UTR 0.36 TCGA-38-4631-01 6 31735274 31735274 C G VWA7 Missense_Mutation p.E552Q 0.26 tolerated(0.39) benign(0.206) TCGA-38-4631-01 6 32155933 32155933 C A PBX2 Missense_Mutation p.A182S 0.31 deleterious(0.01) probably_damaging(0.967) TCGA-38-4631-01 6 32155934 32155934 C A PBX2 Splice_Site p.X182_splice 0.30 TCGA-38-4631-01 6 32188606 32188606 G T NOTCH4 Missense_Mutation p.H283Q 0.32 tolerated(0.12) possibly_damaging(0.891) TCGA-38-4631-01 6 33163925 33163925 C A RXRB Intron 0.32 TCGA-38-4631-01 6 33168967 33168967 G A SLC39A7 5'UTR 0.07 TCGA-38-4631-01 6 35588009 35588009 T C FKBP5 Missense_Mutation p.K98R 0.49 tolerated(0.07) benign(0.082) TCGA-38-4631-01 6 38835952 38835952 G A DNAH8 Missense_Mutation p.D2053N 0.61 probably_damaging(0.992) TCGA-38-4631-01 6 42832695 42832695 G T GLTSCR1L Silent p.T917T 0.65 TCGA-38-4631-01 6 51890625 51890625 A T PKHD1 Missense_Mutation p.V1328D 0.39 deleterious(0) possibly_damaging(0.563) TCGA-38-4631-01 6 51944753 51944753 C A PKHD1 Missense_Mutation p.G112V 0.46 deleterious(0.01) possibly_damaging(0.851) TCGA-38-4631-01 6 56473996 56473996 T C DST Intron 0.54 TCGA-38-4631-01 6 57512833 57512833 C A PRIM2 3'UTR 0.50 TCGA-38-4631-01 6 66063473 66063473 C A EYS Missense_Mutation p.W446L 0.16 tolerated(0.7) benign(0.017) TCGA-38-4631-01 6 70065732 70065732 T C BAI3 Missense_Mutation p.V1192A 0.45 tolerated(0.05) probably_damaging(0.97) TCGA-38-4631-01 6 7230553 7230553 G C RREB1 Missense_Mutation p.A741P 0.29 deleterious(0.04) possibly_damaging(0.876) TCGA-38-4631-01 6 79650327 79650327 G C PHIP 3'UTR 0.14 TCGA-38-4631-01 6 87726233 87726233 A T HTR1E 3'UTR 0.32 TCGA-38-4631-01 6 90382348 90382348 G C MDN1 Silent p.L4516L 0.17 TCGA-38-4631-01 7 104377165 104377165 G A LHFPL3 Nonsense_Mutation p.W163* 0.47 TCGA-38-4631-01 7 105662892 105662892 A T CDHR3 Missense_Mutation p.R692W 0.74 tolerated(0.06) benign(0.006) TCGA-38-4631-01 7 117431569 117431569 G T CTTNBP2 Missense_Mutation p.P561T 0.27 deleterious(0) probably_damaging(1) TCGA-38-4631-01 7 11871417 11871417 C A THSD7A Missense_Mutation p.E52D 0.44 tolerated(0.37) benign(0.003) TCGA-38-4631-01 7 119915119 119915119 G T KCND2 Missense_Mutation p.A145S 0.79 tolerated(0.74) benign(0.029) TCGA-38-4631-01 7 120704314 120704314 A C CPED1 Missense_Mutation p.Q188P 0.11 deleterious(0.02) possibly_damaging(0.852) TCGA-38-4631-01 7 121755132 121755132 G T AASS Missense_Mutation p.H347N 0.24 deleterious(0.04) probably_damaging(0.944) TCGA-38-4631-01 7 127253908 127253908 G A PAX4 Missense_Mutation p.P147L 0.09 tolerated(0.13) benign(0.023) TCGA-38-4631-01 7 128116825 128116825 C T METTL2B Silent p.A2A 0.69 TCGA-38-4631-01 7 130025175 130025175 C A CPA1 Missense_Mutation p.Q326K 0.60 tolerated(0.31) benign(0.002) TCGA-38-4631-01 7 131830040 131830040 A C PLXNA4 Missense_Mutation p.L1688R 0.17 deleterious(0) probably_damaging(1) TCGA-38-4631-01 7 131913111 131913111 G T PLXNA4 Missense_Mutation p.N574K 0.20 tolerated(0.7) benign(0.008) TCGA-38-4631-01 7 135310997 135310997 A T NUP205 Missense_Mutation p.T1561S 0.04 tolerated(0.11) probably_damaging(0.965) TCGA-38-4631-01 7 135376426 135376426 G C SLC13A4 Intron 0.22 TCGA-38-4631-01 7 136700192 136700192 G T CHRM2 Missense_Mutation p.A194S 0.41 deleterious(0) possibly_damaging(0.714) TCGA-38-4631-01 7 137363342 137363342 G T DGKI Silent p.L189L 0.22 TCGA-38-4631-01 7 137612987 137612987 G A CREB3L2 Silent p.L76L 0.28 TCGA-38-4631-01 7 141536247 141536247 G T PRSS37 Missense_Mutation p.T219N 0.32 deleterious(0) probably_damaging(0.984) TCGA-38-4631-01 7 141750516 141750516 T C MGAM Missense_Mutation p.I886T 0.38 deleterious(0.05) benign(0.018) TCGA-38-4631-01 7 142104307 142104307 C G TRBV6-9 Missense_Mutation p.W53S 0.21 deleterious(0) probably_damaging(0.977) TCGA-38-4631-01 7 143956202 143956202 A T OR2A7 Missense_Mutation p.Y174N 0.11 tolerated(1) benign(0.001) TCGA-38-4631-01 7 144070359 144070359 G C ARHGEF5 Missense_Mutation p.K1374N 0.28 deleterious(0.01) possibly_damaging(0.686) TCGA-38-4631-01 7 144320281 144320281 T A TPK1 Missense_Mutation p.K111M 0.20 deleterious(0.01) possibly_damaging(0.896) TCGA-38-4631-01 7 148508784 148508784 G T EZH2 Missense_Mutation p.A627E 0.17 deleterious(0.03) probably_damaging(0.991) TCGA-38-4631-01 7 148851299 148851299 G T ZNF398 Missense_Mutation p.W96L 0.31 deleterious(0) probably_damaging(0.997) TCGA-38-4631-01 7 151174501 151174501 C G RHEB Missense_Mutation p.D65H 0.23 deleterious(0) probably_damaging(1) TCGA-38-4631-01 7 151174502 151174502 C A RHEB Splice_Site p.X65_splice 0.23 TCGA-38-4631-01 7 154143394 154143394 G T DPP6 Silent p.S113S 0.27 TCGA-38-4631-01 7 154684101 154684101 C A DPP6 Silent p.R837R 0.25 TCGA-38-4631-01 7 155504087 155504087 A G RBM33 Missense_Mutation p.Q380R 0.35 deleterious(0.03) benign(0.145) TCGA-38-4631-01 7 22534440 22534440 T C STEAP1B Missense_Mutation p.E12G 0.39 deleterious_low_confidence(0) benign(0.276) TCGA-38-4631-01 7 22999980 22999980 C T FAM126A Missense_Mutation p.E296K 0.24 deleterious(0.03) possibly_damaging(0.676) TCGA-38-4631-01 7 23729051 23729051 G A FAM221A Missense_Mutation p.A135T 0.06 tolerated(0.31) benign(0.425) TCGA-38-4631-01 7 2593983 2593983 C A BRAT1 Missense_Mutation p.C28F 0.23 deleterious(0.05) probably_damaging(0.999) TCGA-38-4631-01 7 30795407 30795407 C A INMT Silent p.V244V 0.24 TCGA-38-4631-01 7 35733802 35733802 T C HERPUD2 Missense_Mutation p.S47G 0.18 tolerated(0.08) benign(0.346) TCGA-38-4631-01 7 47852796 47852796 C T PKD1L1 Silent p.E2423E 0.45 TCGA-38-4631-01 7 48237881 48237881 G T ABCA13 Missense_Mutation p.V71F 0.35 probably_damaging(0.943) TCGA-38-4631-01 7 48314899 48314899 G T ABCA13 Missense_Mutation p.R1879L 0.53 benign(0.009) TCGA-38-4631-01 7 4947150 4947150 C A MMD2 Silent p.G230G 0.49 TCGA-38-4631-01 7 53104043 53104043 G T POM121L12 Missense_Mutation p.A227S 0.25 deleterious(0.05) possibly_damaging(0.866) TCGA-38-4631-01 7 64292490 64292490 G T ZNF138 Missense_Mutation p.Q264H 0.25 tolerated(0.63) benign(0.026) TCGA-38-4631-01 7 71275385 71275385 G T CALN1 Silent p.I198I 0.35 TCGA-38-4631-01 7 82544891 82544891 C A PCLO Missense_Mutation p.E4137D 0.13 unknown(0) TCGA-38-4631-01 7 83029344 83029345 - T SEMA3E Frame_Shift_Ins p.D456Rfs*2 0.26 TCGA-38-4631-01 7 883154 883154 A T SUN1 Nonsense_Mutation p.K219* 0.06 TCGA-38-4631-01 7 93065291 93065291 G T CALCR Nonsense_Mutation p.Y408* 0.12 TCGA-38-4631-01 7 94024365 94024365 C A COL1A2 Silent p.R8R 0.32 TCGA-38-4631-01 7 99821629 99821629 C A GATS Missense_Mutation p.G96V 0.76 tolerated(0.07) probably_damaging(0.971) TCGA-38-4631-01 8 103359295 103359295 C A UBR5 Nonsense_Mutation p.G138* 0.41 TCGA-38-4631-01 8 10465982 10465982 C A RP1L1 Missense_Mutation p.A1876S 0.26 unknown(0) TCGA-38-4631-01 8 10467184 10467184 G A RP1L1 Missense_Mutation p.P1475L 0.15 unknown(0) TCGA-38-4631-01 8 10468596 10468596 C A RP1L1 Silent p.G1004G 0.34 TCGA-38-4631-01 8 10468597 10468597 C A RP1L1 Missense_Mutation p.G1004V 0.34 probably_damaging(0.988) TCGA-38-4631-01 8 110408305 110408305 G T PKHD1L1 Silent p.T287T 0.20 TCGA-38-4631-01 8 110432916 110432916 G T PKHD1L1 Silent p.G898G 0.22 TCGA-38-4631-01 8 110453508 110453508 C A PKHD1L1 Silent p.S1368S 0.20 TCGA-38-4631-01 8 113326281 113326281 C A CSMD3 Missense_Mutation p.G2517V 0.37 deleterious(0.01) probably_damaging(0.944) TCGA-38-4631-01 8 113516078 113516078 T A CSMD3 Missense_Mutation p.H1675L 0.10 tolerated(0.06) benign(0.05) TCGA-38-4631-01 8 113563004 113563004 C A CSMD3 Missense_Mutation p.G1487V 0.47 deleterious(0.01) probably_damaging(0.994) TCGA-38-4631-01 8 116599310 116599310 C A TRPS1 Missense_Mutation p.G873V 0.13 deleterious_low_confidence(0) benign(0.35) TCGA-38-4631-01 8 11832107 11832107 A T DEFB136 Translation_Start_Site p.M1? 0.26 deleterious_low_confidence(0) unknown(0) TCGA-38-4631-01 8 120118127 120118127 G A COLEC10 Silent p.R177R 0.48 TCGA-38-4631-01 8 125989981 125989981 G T ZNF572 Missense_Mutation p.V491L 0.48 tolerated(0.11) benign(0.001) TCGA-38-4631-01 8 13072130 13072130 C G DLC1 Intron 0.15 TCGA-38-4631-01 8 131130876 131130876 C A ASAP1 Missense_Mutation p.R551S 0.09 deleterious(0) benign(0.106) TCGA-38-4631-01 8 139606332 139606332 C A COL22A1 Missense_Mutation p.G1515C 0.12 unknown(0) TCGA-38-4631-01 8 139833475 139833475 C A COL22A1 Silent p.A383A 0.14 TCGA-38-4631-01 8 144997654 144997654 C T PLEC Missense_Mutation p.R2285Q 0.38 unknown(0) TCGA-38-4631-01 8 145113227 145113227 C G OPLAH Silent p.S288S 0.50 TCGA-38-4631-01 8 17157479 17157479 G C MTMR7 Silent p.S625S 0.25 TCGA-38-4631-01 8 19221651 19221651 A T SH2D4A Missense_Mutation p.R259W 0.22 deleterious(0) probably_damaging(0.997) TCGA-38-4631-01 8 30921859 30921859 A T WRN Missense_Mutation p.L88F 0.24 deleterious(0.05) benign(0.059) TCGA-38-4631-01 8 3443692 3443692 G C CSMD1 Silent p.L396L 0.43 TCGA-38-4631-01 8 3565937 3565937 G T CSMD1 Silent p.V336V 0.16 TCGA-38-4631-01 8 39607214 39607214 C A ADAM2 Missense_Mutation p.C616F 0.26 deleterious(0) probably_damaging(0.913) TCGA-38-4631-01 8 42012412 42012412 G T AP3M2 Silent p.V69V 0.16 TCGA-38-4631-01 8 48878870 48878870 G T MCM4 Missense_Mutation p.R319L 0.17 deleterious(0) probably_damaging(0.979) TCGA-38-4631-01 8 49832627 49832627 G C SNAI2 Missense_Mutation p.C151W 0.12 deleterious(0.02) benign(0.427) TCGA-38-4631-01 8 49987884 49987884 G A C8orf22 3'UTR 0.54 TCGA-38-4631-01 8 52370125 52370125 G T PXDNL Nonsense_Mutation p.C305* 0.18 TCGA-38-4631-01 8 55534687 55534687 T G RP1 Missense_Mutation p.L209R 0.21 deleterious(0) probably_damaging(0.996) TCGA-38-4631-01 8 66963823 66963823 C A DNAJC5B Nonsense_Mutation p.S14* 0.22 TCGA-38-4631-01 8 68024301 68024301 G T CSPP1 Splice_Site p.X405_splice 0.29 TCGA-38-4631-01 8 77768313 77768313 G T ZFHX4 Silent p.P3052P 0.17 TCGA-38-4631-01 8 82627319 82627319 C A ZFAND1 Missense_Mutation p.D57Y 0.21 deleterious(0.01) possibly_damaging(0.781) TCGA-38-4631-01 8 91963412 91963412 C T NECAB1 Missense_Mutation p.T337I 0.17 tolerated(0.44) benign(0.001) TCGA-38-4631-01 8 95158253 95158253 A G CDH17 Silent p.A690A 0.18 TCGA-38-4631-01 8 96259924 96259924 T A C8orf37 Missense_Mutation p.Q182L 0.15 deleterious(0) probably_damaging(0.999) TCGA-38-4631-01 8 97156857 97156857 G T GDF6 Missense_Mutation p.D434E 0.30 deleterious(0) probably_damaging(1) TCGA-38-4631-01 8 99054345 99054345 A T RPL30 Intron 0.53 TCGA-38-4631-01 9 101788185 101788185 G A COL15A1 Splice_Site p.X661_splice 0.40 TCGA-38-4631-01 9 106901507 106901507 G T SMC2 Missense_Mutation p.A1169S 0.43 tolerated(0.56) benign(0) TCGA-38-4631-01 9 107267268 107267268 C T OR13F1 Missense_Mutation p.T242I 0.40 deleterious(0) benign(0.119) TCGA-38-4631-01 9 107267269 107267269 A G OR13F1 Silent p.T242T 0.41 TCGA-38-4631-01 9 107331656 107331656 G T OR13C8 Missense_Mutation p.D70Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-38-4631-01 9 107331807 107331807 T A OR13C8 Missense_Mutation p.L120Q 0.44 deleterious(0) possibly_damaging(0.907) TCGA-38-4631-01 9 112542647 112542647 C T PALM2-AKAP2 5'UTR 0.50 TCGA-38-4631-01 9 116259626 116259626 G T RGS3 Missense_Mutation p.E261D 0.10 deleterious(0) benign(0.156) TCGA-38-4631-01 9 116279846 116279846 G A RGS3 Missense_Mutation p.R567Q 0.05 deleterious(0) probably_damaging(0.934) TCGA-38-4631-01 9 119488128 119488128 A G ASTN2 Missense_Mutation p.Y859H 0.12 deleterious(0) unknown(0) TCGA-38-4631-01 9 119625959 119625959 G C ASTN2 Missense_Mutation p.S597C 0.52 deleterious(0) unknown(0) TCGA-38-4631-01 9 124936922 124936922 C G MORN5 Intron 0.34 TCGA-38-4631-01 9 125377093 125377093 C T OR1Q1 Missense_Mutation p.P26L 0.44 tolerated(1) benign(0.019) TCGA-38-4631-01 9 130569352 130569352 C A FPGS Missense_Mutation p.L163M 0.12 deleterious(0) probably_damaging(0.986) TCGA-38-4631-01 9 130825873 130825873 T A NAIF1 Missense_Mutation p.Q273L 0.40 tolerated_low_confidence(0.11) probably_damaging(0.932) TCGA-38-4631-01 9 131398630 131398630 C T WDR34 Silent p.S211S 0.31 TCGA-38-4631-01 9 135797337 135797337 C G TSC1 Missense_Mutation p.V178L 0.45 deleterious(0.01) possibly_damaging(0.531) TCGA-38-4631-01 9 135864468 135864468 G T GFI1B Silent p.G177G 0.28 TCGA-38-4631-01 9 140126579 140126579 C A SLC34A3 Silent p.L47L 0.40 TCGA-38-4631-01 9 17789527 17789527 G T SH3GL2 Missense_Mutation p.M201I 0.47 deleterious(0.03) probably_damaging(0.993) TCGA-38-4631-01 9 2054677 2054677 C T SMARCA2 Missense_Mutation p.A376V 0.34 possibly_damaging(0.483) TCGA-38-4631-01 9 32634278 32634278 T C TAF1L Missense_Mutation p.I434V 0.20 tolerated(0.4) benign(0.338) TCGA-38-4631-01 9 33071822 33071822 G A SMU1 Silent p.P102P 0.53 TCGA-38-4631-01 9 35792526 35792526 G A NPR2 Missense_Mutation p.A41T 0.55 deleterious(0.02) benign(0.094) TCGA-38-4631-01 9 43627176 43627176 G T SPATA31A6 Missense_Mutation p.P504Q 0.38 deleterious(0.02) probably_damaging(0.992) TCGA-38-4631-01 9 77282816 77282816 A G RORB Silent p.P370P 0.07 TCGA-38-4631-01 9 84609573 84609573 T A SPATA31D1 Missense_Mutation p.F1396L 0.47 tolerated(0.59) benign(0.046) TCGA-38-4631-01 9 95263280 95263280 G T ECM2 Missense_Mutation p.L554I 0.45 deleterious(0) probably_damaging(0.998) TCGA-38-4631-01 9 977258 977258 T G DMRT3 Missense_Mutation p.L86R 0.35 tolerated(0.2) possibly_damaging(0.822) TCGA-38-4631-01 X 100912509 100912509 G T ARMCX2 Nonsense_Mutation p.Y22* 0.20 TCGA-38-4631-01 X 101623501 101623501 G A NXF2B Silent p.Y225Y 0.11 TCGA-38-4631-01 X 102612943 102612943 A T WBP5 3'UTR 0.29 TCGA-38-4631-01 X 105011394 105011394 G A IL1RAPL2 Missense_Mutation p.A601T 0.13 tolerated_low_confidence(0.65) benign(0.009) TCGA-38-4631-01 X 107331000 107331000 G T PSMD10 Missense_Mutation p.A148D 0.25 deleterious(0) possibly_damaging(0.891) TCGA-38-4631-01 X 107334817 107334817 C A PSMD10 5'UTR 0.19 TCGA-38-4631-01 X 107417735 107417735 G T COL4A6 Silent p.R1026R 0.15 TCGA-38-4631-01 X 107911660 107911660 C A COL4A5 Missense_Mutation p.P1239H 0.13 unknown(0) TCGA-38-4631-01 X 108625421 108625421 G T GUCY2F Missense_Mutation p.L1026I 0.16 tolerated(0.43) benign(0.055) TCGA-38-4631-01 X 108684682 108684682 C A GUCY2F Missense_Mutation p.Q533H 0.29 tolerated(0.2) benign(0.172) TCGA-38-4631-01 X 108785910 108785910 G T NXT2 Missense_Mutation p.S196I 0.15 deleterious_low_confidence(0) possibly_damaging(0.515) TCGA-38-4631-01 X 108867952 108867952 C T KCNE1L Missense_Mutation p.E100K 0.20 tolerated(0.29) benign(0.043) TCGA-38-4631-01 X 120181573 120181573 C A GLUD2 Missense_Mutation p.S12Y 0.31 tolerated_low_confidence(0.35) benign(0.014) TCGA-38-4631-01 X 122318470 122318470 G A GRIA3 Missense_Mutation p.G28E 0.18 deleterious(0.03) probably_damaging(0.931) TCGA-38-4631-01 X 123220443 123220443 A T STAG2 Nonsense_Mutation p.R1034* 0.22 TCGA-38-4631-01 X 128650469 128650469 G T SMARCA1 Silent p.A89A 0.15 TCGA-38-4631-01 X 129147051 129147051 C T BCORL1 Silent p.Y101Y 0.23 TCGA-38-4631-01 X 129148882 129148882 A T BCORL1 Missense_Mutation p.T712S 0.15 possibly_damaging(0.625) TCGA-38-4631-01 X 129272583 129272583 C A AIFM1 Missense_Mutation p.A318S 0.16 tolerated(0.25) possibly_damaging(0.682) TCGA-38-4631-01 X 12937852 12937852 C G TLR8 Missense_Mutation p.N231K 0.15 deleterious(0.01) benign(0.285) TCGA-38-4631-01 X 129837135 129837135 C G ENOX2 Missense_Mutation p.G48A 0.21 deleterious(0) possibly_damaging(0.538) TCGA-38-4631-01 X 130409602 130409602 G A IGSF1 Nonsense_Mutation p.Q1017* 0.19 TCGA-38-4631-01 X 132473343 132473343 C A GPC4 Missense_Mutation p.G63C 0.58 deleterious(0) possibly_damaging(0.879) TCGA-38-4631-01 X 132548911 132548911 T C GPC4 Missense_Mutation p.K28R 0.13 tolerated(1) benign(0.032) TCGA-38-4631-01 X 135106567 135106567 C A SLC9A6 Missense_Mutation p.T514K 0.13 deleterious(0.02) possibly_damaging(0.758) TCGA-38-4631-01 X 135443691 135443691 G C GPR112 Missense_Mutation p.E2408Q 0.18 deleterious(0.02) possibly_damaging(0.627) TCGA-38-4631-01 X 135570363 135570363 T C BRS3 Silent p.D30D 0.51 TCGA-38-4631-01 X 138850587 138850587 C A ATP11C Missense_Mutation p.W744C 0.48 tolerated(0.16) probably_damaging(0.996) TCGA-38-4631-01 X 140985492 140985492 C G MAGEC3 Silent p.S602S 0.20 TCGA-38-4631-01 X 140994985 140994985 C A MAGEC1 Missense_Mutation p.P599T 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.641) TCGA-38-4631-01 X 140996472 140996472 C A MAGEC1 Silent p.T1094T 0.12 TCGA-38-4631-01 X 147011477 147011477 G T FMR1 Nonsense_Mutation p.E144* 0.12 TCGA-38-4631-01 X 148798268 148798268 G T MAGEA11 Silent p.V374V 0.51 TCGA-38-4631-01 X 150832785 150832785 T A PASD1 Missense_Mutation p.S346T 0.11 tolerated(0.11) possibly_damaging(0.641) TCGA-38-4631-01 X 151092781 151092781 C A MAGEA4 Missense_Mutation p.D215E 0.10 deleterious(0) benign(0.037) TCGA-38-4631-01 X 153137773 153137773 G T L1CAM Silent p.P78P 0.62 TCGA-38-4631-01 X 153220719 153220719 G T HCFC1 Missense_Mutation p.T1044N 0.09 tolerated_low_confidence(0.08) benign(0.001) TCGA-38-4631-01 X 153581377 153581377 C G FLNA Missense_Mutation p.R2073P 0.13 deleterious(0) probably_damaging(0.943) TCGA-38-4631-01 X 154293943 154293943 C A MTCP1 Missense_Mutation p.R76L 0.10 deleterious(0.01) benign(0.166) TCGA-38-4631-01 X 154507270 154507270 A G CLIC2 Silent p.R222R 0.10 TCGA-38-4631-01 X 15554498 15554498 C A BMX Missense_Mutation p.H390Q 0.19 deleterious(0) possibly_damaging(0.655) TCGA-38-4631-01 X 16870709 16870709 G - RBBP7 Frame_Shift_Del p.H354Ifs*32 0.12 TCGA-38-4631-01 X 19031889 19031889 T A GPR64 Silent p.P338P 0.16 TCGA-38-4631-01 X 21534736 21534736 C A CNKSR2 Missense_Mutation p.P315H 0.22 deleterious(0) probably_damaging(0.999) TCGA-38-4631-01 X 21667055 21667055 G T CNKSR2 Missense_Mutation p.M933I 0.16 deleterious(0.04) benign(0.002) TCGA-38-4631-01 X 23412273 23412273 C A PTCHD1 Missense_Mutation p.R880S 0.27 deleterious_low_confidence(0.02) probably_damaging(0.987) TCGA-38-4631-01 X 30260998 30260998 T A MAGEB4 Missense_Mutation p.L249Q 0.18 deleterious(0) probably_damaging(0.998) TCGA-38-4631-01 X 30269673 30269673 C A MAGEB1 3'UTR 0.32 TCGA-38-4631-01 X 3228004 3228004 G T MXRA5 Missense_Mutation p.P2747H 0.33 deleterious(0) probably_damaging(0.95) TCGA-38-4631-01 X 3240048 3240048 G T MXRA5 Silent p.S1226S 0.24 TCGA-38-4631-01 X 3240386 3240386 C A MXRA5 Nonsense_Mutation p.E1114* 0.39 TCGA-38-4631-01 X 32591656 32591656 T C DMD Silent p.Q601Q 0.36 TCGA-38-4631-01 X 32591898 32591898 G A DMD Silent p.D556D 0.15 TCGA-38-4631-01 X 34150342 34150342 C T FAM47A Silent p.K18K 0.31 TCGA-38-4631-01 X 347161 347161 G C PPP2R3B Missense_Mutation p.S89C 0.41 tolerated(0.11) benign(0.002) TCGA-38-4631-01 X 34961712 34961712 G T FAM47B Missense_Mutation p.G255V 0.23 tolerated(0.09) possibly_damaging(0.572) TCGA-38-4631-01 X 37028757 37028757 C G FAM47C Silent p.R758R 0.44 TCGA-38-4631-01 X 37653016 37653016 G T CYBB Missense_Mutation p.D146Y 0.18 deleterious(0.01) possibly_damaging(0.863) TCGA-38-4631-01 X 40464916 40464916 T G ATP6AP2 Missense_Mutation p.V321G 0.09 deleterious(0) probably_damaging(0.937) TCGA-38-4631-01 X 41333566 41333566 G C NYX Missense_Mutation p.R287P 0.20 deleterious(0.01) probably_damaging(1) TCGA-38-4631-01 X 41495914 41495914 C A CASK Nonsense_Mutation p.E278* 0.21 TCGA-38-4631-01 X 45023392 45023392 A T CXorf36 Intron 0.45 TCGA-38-4631-01 X 47106710 47106710 G T USP11 Missense_Mutation p.D853Y 0.45 deleterious(0) probably_damaging(0.995) TCGA-38-4631-01 X 47485815 47485815 C A CFP Missense_Mutation p.R348S 0.21 deleterious(0) probably_damaging(1) TCGA-38-4631-01 X 48663850 48663850 C G HDAC6 Missense_Mutation p.P106R 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-38-4631-01 X 49063081 49063081 C A CACNA1F Missense_Mutation p.R1799L 0.16 deleterious(0) benign(0.004) TCGA-38-4631-01 X 49063213 49063213 G A CACNA1F Missense_Mutation p.R1790C 0.44 deleterious(0.02) benign(0.072) TCGA-38-4631-01 X 54949780 54949780 C A TRO Missense_Mutation p.T272N 0.23 deleterious(0) unknown(0) TCGA-38-4631-01 X 56310868 56310868 C A KLF8 Missense_Mutation p.R341S 0.11 deleterious(0) unknown(0) TCGA-38-4631-01 X 5821809 5821809 C T NLGN4X Missense_Mutation p.V304I 0.21 tolerated(0.11) possibly_damaging(0.86) TCGA-38-4631-01 X 65413471 65413471 G T HEPH Nonsense_Mutation p.G508* 0.31 TCGA-38-4631-01 X 65428009 65428009 T C HEPH Silent p.N882N 0.44 TCGA-38-4631-01 X 68836384 68836384 C T EDA Missense_Mutation p.L78F 0.18 tolerated_low_confidence(0.15) unknown(0) TCGA-38-4631-01 X 70521649 70521649 A T ITGB1BP2 5'UTR 0.40 TCGA-38-4631-01 X 70811981 70811981 T A ACRC Silent p.L23L 0.15 TCGA-38-4631-01 X 73046712 73046712 C A XIST RNA 0.35 TCGA-38-4631-01 X 73048820 73048820 C A TSIX RNA 0.56 TCGA-38-4631-01 X 73506941 73506941 T A MIR545 RNA 0.18 TCGA-38-4631-01 X 76889201 76889201 C A ATRX Splice_Site p.X1604_splice 0.16 TCGA-38-4631-01 X 76953071 76953071 C A ATRX Missense_Mutation p.R81M 0.13 probably_damaging(0.997) TCGA-38-4631-01 X 80377161 80377161 T A HMGN5 5'UTR 0.36 TCGA-38-4631-01 X 83616487 83616487 C A HDX Missense_Mutation p.C480F 0.15 deleterious(0) probably_damaging(0.972) TCGA-38-4631-01 X 8433438 8433438 G T VCX3B 5'UTR 0.06 TCGA-38-4631-01 X 84362769 84362769 G T SATL1 Missense_Mutation p.S402R 0.15 tolerated(0.43) benign(0.06) TCGA-38-4631-01 X 89177645 89177645 C A TGIF2LX Silent p.A187A 0.15 TCGA-38-4631-01 X 90691663 90691663 G T PABPC5 Missense_Mutation p.G363C 0.19 deleterious(0) probably_damaging(1) TCGA-38-4631-01 X 91873299 91873299 C A PCDH11X Missense_Mutation p.A1135D 0.70 deleterious(0) possibly_damaging(0.897) TCGA-38-4631-01 X 99854595 99854595 G A TNMD Missense_Mutation p.V279I 0.11 tolerated(1) probably_damaging(0.969) TCGA-38-4632-01 10 105331369 105331369 G C NEURL1 Missense_Mutation p.V147L 0.10 deleterious(0) probably_damaging(0.975) TCGA-38-4632-01 10 108337086 108337086 C A SORCS1 Intron 0.18 TCGA-38-4632-01 10 108466382 108466382 C A SORCS1 Missense_Mutation p.G385V 0.11 deleterious(0.03) possibly_damaging(0.905) TCGA-38-4632-01 10 108489872 108489872 C T SORCS1 Nonsense_Mutation p.W320* 0.33 TCGA-38-4632-01 10 111633124 111633124 C T XPNPEP1 Splice_Site p.X484_splice 0.08 TCGA-38-4632-01 10 123279674 123279674 G A FGFR2 Missense_Mutation p.P253L 0.18 deleterious(0.01) benign(0.024) TCGA-38-4632-01 10 129172391 129172391 G A DOCK1 Silent p.V1175V 0.19 TCGA-38-4632-01 10 13239666 13239666 C A MCM10 Missense_Mutation p.T674K 0.12 tolerated(0.65) benign(0.026) TCGA-38-4632-01 10 18789826 18789850 ACATGAGGCTGCAGCATGAACAGAG - CACNB2 Frame_Shift_Del p.N181Kfs*23 0.31 TCGA-38-4632-01 10 18964192 18964192 A G ARL5B 3'UTR 0.14 TCGA-38-4632-01 10 25886839 25886839 C A GPR158 Missense_Mutation p.P762T 0.12 deleterious(0) probably_damaging(0.983) TCGA-38-4632-01 10 3124618 3124618 A G PFKP Missense_Mutation p.I51V 0.12 deleterious(0.01) benign(0.004) TCGA-38-4632-01 10 37486390 37486390 G C ANKRD30A Missense_Mutation p.E844Q 0.06 tolerated(0.57) probably_damaging(0.932) TCGA-38-4632-01 10 38305840 38305840 G T ZNF33A Silent p.V17V 0.22 TCGA-38-4632-01 10 43292409 43292409 G T BMS1 Missense_Mutation p.A573S 0.33 tolerated(0.19) benign(0.031) TCGA-38-4632-01 10 48429174 48429174 T A GDF10 Missense_Mutation p.S238C 0.20 deleterious(0.01) possibly_damaging(0.708) TCGA-38-4632-01 10 50530859 50530859 C - C10orf71 Frame_Shift_Del p.T90Rfs*44 0.17 TCGA-38-4632-01 10 69299427 69299427 C A CTNNA3 Missense_Mutation p.S98I 0.33 deleterious(0) possibly_damaging(0.727) TCGA-38-4632-01 10 99504558 99504558 G A ZFYVE27 Missense_Mutation p.R114Q 0.07 tolerated(0.33) benign(0.005) TCGA-38-4632-01 11 102562551 102562551 G A MMP27 Silent p.S496S 0.33 TCGA-38-4632-01 11 104897650 104897650 C A CASP1 Missense_Mutation p.M345I 0.29 tolerated(0.15) benign(0.001) TCGA-38-4632-01 11 105881245 105881245 C A MSANTD4 Missense_Mutation p.A134S 0.56 tolerated(0.19) benign(0.03) TCGA-38-4632-01 11 114441811 114441811 T A NXPE4 Missense_Mutation p.Q495L 0.24 deleterious(0) probably_damaging(0.932) TCGA-38-4632-01 11 117985987 117985987 A T TMPRSS4 Missense_Mutation p.T382S 0.10 tolerated(0.07) benign(0.26) TCGA-38-4632-01 11 118463522 118463522 G T ARCN1 Silent p.V361V 0.64 TCGA-38-4632-01 11 119029413 119029413 C A ABCG4 Silent p.A438A 0.64 TCGA-38-4632-01 11 120175760 120175760 C T POU2F3 Missense_Mutation p.P158S 0.35 tolerated(0.08) benign(0.132) TCGA-38-4632-01 11 122775073 122775074 - T C11orf63 Frame_Shift_Ins p.L263Ffs*17 0.17 TCGA-38-4632-01 11 123893726 123893726 A T OR10G9 Nonsense_Mutation p.K3* 0.14 TCGA-38-4632-01 11 124310801 124310801 A T OR8B8 Missense_Mutation p.F61I 0.21 deleterious_low_confidence(0) possibly_damaging(0.604) TCGA-38-4632-01 11 124742360 124742360 G T ROBO3 Silent p.V414V 0.09 TCGA-38-4632-01 11 18113861 18113861 A G SAAL1 Missense_Mutation p.V115A 0.26 deleterious(0) possibly_damaging(0.791) TCGA-38-4632-01 11 20949926 20949926 G A NELL1 Missense_Mutation p.G300S 0.31 deleterious(0) probably_damaging(0.998) TCGA-38-4632-01 11 43776422 43776422 G - HSD17B12 Intron 0.10 TCGA-38-4632-01 11 5080000 5080000 T A OR52E2 Silent p.P286P 0.29 TCGA-38-4632-01 11 5275539 5275539 C A HBG2 Missense_Mutation p.D100Y 0.28 deleterious(0) probably_damaging(1) TCGA-38-4632-01 11 55136012 55136012 C A OR4A15 Missense_Mutation p.T218N 0.29 deleterious_low_confidence(0.01) benign(0.396) TCGA-38-4632-01 11 55927530 55927530 A T OR8K5 Missense_Mutation p.D88E 0.15 tolerated_low_confidence(0.25) benign(0.004) TCGA-38-4632-01 11 55944383 55944383 G - OR5J2 Frame_Shift_Del p.C97Sfs*21 0.31 TCGA-38-4632-01 11 56114132 56114132 G T OR8K1 Missense_Mutation p.L206F 0.18 tolerated_low_confidence(0.13) benign(0.177) TCGA-38-4632-01 11 57070017 57070017 G A TNKS1BP1 Silent p.S1533S 0.23 TCGA-38-4632-01 11 57970677 57970677 C G OR1S2 Nonstop_Mutation p.*326Sext*? 0.18 TCGA-38-4632-01 11 58949516 58949516 G T DTX4 Missense_Mutation p.Q172H 0.13 tolerated(0.18) benign(0.013) TCGA-38-4632-01 11 58978321 58978321 G A MPEG1 Missense_Mutation p.T673I 0.30 tolerated(0.15) benign(0.033) TCGA-38-4632-01 11 58980169 58980169 A G MPEG1 Missense_Mutation p.V57A 0.15 deleterious(0.01) benign(0.08) TCGA-38-4632-01 11 60785469 60785469 C A CD6 Silent p.T607T 0.17 TCGA-38-4632-01 11 61511175 61511175 G T DAGLA Missense_Mutation p.E781D 0.23 deleterious_low_confidence(0.01) probably_damaging(0.97) TCGA-38-4632-01 11 64536578 64536578 G A SF1 Missense_Mutation p.S393L 0.19 deleterious(0.02) possibly_damaging(0.62) TCGA-38-4632-01 11 64899785 64899785 G A SYVN1 Silent p.F155F 0.26 TCGA-38-4632-01 11 65268496 65268496 G T MALAT1 RNA 0.07 TCGA-38-4632-01 11 66102525 66102525 C T RIN1 Missense_Mutation p.V249M 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-38-4632-01 11 66461658 66461658 C A SPTBN2 Missense_Mutation p.Q1485H 0.18 tolerated(0.2) possibly_damaging(0.575) TCGA-38-4632-01 11 68777376 68777376 G T MRGPRF 5'UTR 0.09 TCGA-38-4632-01 11 68777421 68777421 C T MRGPRF 5'UTR 0.27 TCGA-38-4632-01 11 76750737 76750737 C A B3GNT6 Missense_Mutation p.P48T 0.26 tolerated(0.61) benign(0.001) TCGA-38-4632-01 11 92495238 92495238 G T FAT3 Missense_Mutation p.V1296L 0.13 benign(0.191) TCGA-38-4632-01 11 94554901 94554901 C A AMOTL1 Missense_Mutation p.Q443K 0.15 deleterious(0.03) probably_damaging(0.966) TCGA-38-4632-01 12 100564722 100564722 T A RP11-175P13.3 3'Flank 0.18 TCGA-38-4632-01 12 101577997 101577997 T A SLC5A8 Missense_Mutation p.M323L 0.15 tolerated(0.12) benign(0.032) TCGA-38-4632-01 12 10194175 10194175 G - CLEC9A 5'UTR 0.20 TCGA-38-4632-01 12 112326315 112326315 G A MAPKAPK5 Silent p.Q331Q 0.10 TCGA-38-4632-01 12 112708216 112708216 C T HECTD4 Missense_Mutation p.V520I 0.09 possibly_damaging(0.89) TCGA-38-4632-01 12 114260999 114260999 C A RBM19 Intron 0.21 TCGA-38-4632-01 12 117768467 117768467 G C NOS1 Silent p.S136S 0.34 TCGA-38-4632-01 12 120741852 120741852 G T SIRT4 Missense_Mutation p.C163F 0.05 deleterious(0) possibly_damaging(0.797) TCGA-38-4632-01 12 19615515 19615515 G A AEBP2 Missense_Mutation p.G248E 0.51 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-38-4632-01 12 22354362 22354362 G T ST8SIA1 3'UTR 0.15 TCGA-38-4632-01 12 2778097 2778097 A T CACNA1C Splice_Site p.X1590_splice 0.13 TCGA-38-4632-01 12 29474839 29474839 G A FAR2 Silent p.L413L 0.18 TCGA-38-4632-01 12 30784831 30784831 G A IPO8 Missense_Mutation p.A1005V 0.10 tolerated(0.16) benign(0.04) TCGA-38-4632-01 12 31135488 31135488 A T TSPAN11 Missense_Mutation p.S160C 0.08 deleterious(0) probably_damaging(0.943) TCGA-38-4632-01 12 33559996 33559996 G C SYT10 Missense_Mutation p.P269A 0.13 deleterious(0) probably_damaging(0.998) TCGA-38-4632-01 12 44926385 44926385 G T NELL2 Missense_Mutation p.P645T 0.17 tolerated(0.54) possibly_damaging(0.899) TCGA-38-4632-01 12 48482982 48482982 C A SENP1 Intron 0.09 TCGA-38-4632-01 12 49742618 49742618 G A DNAJC22 5'UTR 0.10 TCGA-38-4632-01 12 49937199 49937199 A G KCNH3 Missense_Mutation p.T241A 0.33 deleterious(0.04) benign(0.298) TCGA-38-4632-01 12 50282944 50282944 G A FAIM2 Silent p.L231L 0.21 TCGA-38-4632-01 12 52282384 52282384 C A ANKRD33 Missense_Mutation p.L60M 0.07 deleterious_low_confidence(0.01) benign(0.102) TCGA-38-4632-01 12 54379623 54379623 G T HOXC10 Missense_Mutation p.G194C 0.32 tolerated(0.05) possibly_damaging(0.525) TCGA-38-4632-01 12 56078798 56078798 G T ITGA7 3'UTR 0.21 TCGA-38-4632-01 12 56495852 56495852 G T ERBB3 3'UTR 0.14 TCGA-38-4632-01 12 56848062 56848062 G T MIP Silent p.V112V 0.11 TCGA-38-4632-01 12 57396914 57396914 C T ZBTB39 Silent p.L596L 0.15 TCGA-38-4632-01 12 6948210 6948210 G A LEPREL2 Missense_Mutation p.G650D 0.42 deleterious(0) probably_damaging(1) TCGA-38-4632-01 12 7050624 7050624 A C ATN1 Missense_Mutation p.E1149A 0.49 probably_damaging(0.991) TCGA-38-4632-01 12 75601598 75601598 G C KCNC2 Missense_Mutation p.P56A 0.20 tolerated_low_confidence(0.71) benign(0) TCGA-38-4632-01 12 78334186 78334186 G T NAV3 Missense_Mutation p.V111L 0.42 deleterious(0) probably_damaging(0.966) TCGA-38-4632-01 12 9225370 9225370 G A A2M Missense_Mutation p.T1285I 0.05 deleterious(0.03) benign(0.021) TCGA-38-4632-01 12 96692734 96692734 T C CDK17 Missense_Mutation p.R210G 0.22 deleterious(0.03) possibly_damaging(0.893) TCGA-38-4632-01 13 101833673 101833673 G C NALCN Intron 0.24 TCGA-38-4632-01 13 102051499 102051499 C A NALCN 5'UTR 0.32 TCGA-38-4632-01 13 114773056 114773056 C A RASA3 Silent p.G565G 0.17 TCGA-38-4632-01 13 31309770 31309770 G - ALOX5AP Frame_Shift_Del p.V10Sfs*52 0.11 TCGA-38-4632-01 13 33628269 33628269 G C KL Missense_Mutation p.R395S 0.16 deleterious(0) probably_damaging(0.998) TCGA-38-4632-01 13 47409209 47409209 C A HTR2A Silent p.R393R 0.21 TCGA-38-4632-01 13 47466626 47466626 A T HTR2A Missense_Mutation p.L171Q 0.22 deleterious(0) probably_damaging(1) TCGA-38-4632-01 13 77569228 77569228 T G CLN5 Silent p.P117P 0.07 TCGA-38-4632-01 13 77569333 77569333 A G CLN5 Silent p.E152E 0.05 TCGA-38-4632-01 13 84453480 84453480 A T SLITRK1 3'UTR 0.27 TCGA-38-4632-01 13 95092211 95092211 C A DCT Nonsense_Mutation p.G534* 0.16 TCGA-38-4632-01 14 106174436 106174436 G C IGHA1 Missense_Mutation p.P118R 0.27 tolerated(0.52) benign(0.107) TCGA-38-4632-01 14 107170326 107170326 A T IGHV1-69 Silent p.A14A 0.16 TCGA-38-4632-01 14 20216191 20216191 C A OR4Q3 Missense_Mutation p.A202D 0.30 deleterious(0) benign(0.24) TCGA-38-4632-01 14 21990402 21990402 C T SALL2 3'UTR 0.44 TCGA-38-4632-01 14 24727494 24727494 T A TGM1 Missense_Mutation p.S467C 0.09 deleterious(0.01) probably_damaging(0.962) TCGA-38-4632-01 14 24884816 24884816 C T NYNRIN Silent p.P1287P 0.08 TCGA-38-4632-01 14 30135337 30135337 C T PRKD1 Missense_Mutation p.D161N 0.13 deleterious(0) probably_damaging(0.987) TCGA-38-4632-01 14 31774347 31774347 T A RP11-596D21.1 3'Flank 0.25 TCGA-38-4632-01 14 39543704 39543704 T C SEC23A Missense_Mutation p.T340A 0.53 tolerated(0.86) benign(0.003) TCGA-38-4632-01 14 65008744 65008744 G T HSPA2 Missense_Mutation p.D393Y 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-38-4632-01 14 73440837 73440837 G A ZFYVE1 Silent p.A684A 0.12 TCGA-38-4632-01 14 74125618 74125618 A G DNAL1 Missense_Mutation p.I37M 0.21 deleterious(0.03) possibly_damaging(0.855) TCGA-38-4632-01 14 89647103 89647103 G C FOXN3 Missense_Mutation p.L287V 0.42 tolerated(0.15) benign(0.007) TCGA-38-4632-01 14 92555130 92555130 G - ATXN3 Frame_Shift_Del p.P140Qfs*3 0.13 TCGA-38-4632-01 14 93709128 93709128 T G BTBD7 Missense_Mutation p.T964P 0.39 tolerated_low_confidence(0.11) benign(0) TCGA-38-4632-01 15 26866615 26866615 G T GABRB3 Missense_Mutation p.P103T 0.24 tolerated(0.14) probably_damaging(1) TCGA-38-4632-01 15 27182439 27182439 C A GABRA5 Missense_Mutation p.Q230K 0.12 tolerated(0.08) benign(0.174) TCGA-38-4632-01 15 28474639 28474639 C A HERC2 Missense_Mutation p.W1696L 0.14 benign(0.003) TCGA-38-4632-01 15 37184257 37184257 G T MEIS2 3'UTR 0.21 TCGA-38-4632-01 15 48551398 48551398 C A SLC12A1 Missense_Mutation p.P682T 0.09 deleterious(0) possibly_damaging(0.697) TCGA-38-4632-01 15 48551399 48551399 C A SLC12A1 Missense_Mutation p.P682H 0.09 deleterious(0) possibly_damaging(0.905) TCGA-38-4632-01 15 49036530 49036530 C A CEP152 Missense_Mutation p.A1248S 0.15 deleterious(0.01) benign(0.075) TCGA-38-4632-01 15 58253451 58253451 C A ALDH1A2 Missense_Mutation p.M431I 0.08 tolerated(1) benign(0.001) TCGA-38-4632-01 15 73541487 73541487 G A NEO1 Missense_Mutation p.G565S 0.13 tolerated(0.17) probably_damaging(0.96) TCGA-38-4632-01 15 75595021 75595021 C T DNM1P34 RNA 0.23 TCGA-38-4632-01 15 76496577 76496577 C A C15orf27 Missense_Mutation p.P506H 0.15 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-38-4632-01 15 78390402 78390402 C A SH2D7 Missense_Mutation p.P133H 0.14 deleterious(0) possibly_damaging(0.855) TCGA-38-4632-01 15 78390403 78390403 C A SH2D7 Silent p.P133P 0.14 TCGA-38-4632-01 15 83926469 83926469 C T BNC1 Missense_Mutation p.D904N 0.14 tolerated(0.06) benign(0.017) TCGA-38-4632-01 15 84611461 84611461 G T ADAMTSL3 Missense_Mutation p.R744L 0.28 tolerated(0.14) benign(0.112) TCGA-38-4632-01 15 88678345 88678345 C A NTRK3 Missense_Mutation p.K397N 0.15 tolerated(0.07) benign(0.017) TCGA-38-4632-01 15 88678354 88678354 G T NTRK3 Missense_Mutation p.H394Q 0.16 tolerated(0.32) benign(0.097) TCGA-38-4632-01 15 90447054 90447054 C A C15orf38-AP3S2 Missense_Mutation p.G155W 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-38-4632-01 16 1292330 1292330 C T TPSAB1 3'UTR 0.32 TCGA-38-4632-01 16 14028125 14028125 A T ERCC4 Silent p.A393A 0.25 TCGA-38-4632-01 16 19883228 19883228 T A GPRC5B Missense_Mutation p.R314W 0.45 tolerated(0.06) probably_damaging(0.999) TCGA-38-4632-01 16 21737885 21737885 C A OTOA Missense_Mutation p.P641H 0.15 deleterious(0.02) benign(0.114) TCGA-38-4632-01 16 24366154 24366154 G A CACNG3 Missense_Mutation p.R99Q 0.17 deleterious(0.01) possibly_damaging(0.871) TCGA-38-4632-01 16 27802775 27802775 G T GSG1L Missense_Mutation p.H304Q 0.29 tolerated_low_confidence(0.17) benign(0.076) TCGA-38-4632-01 16 2813458 2813464 ACCAAAG CCCAAT SRRM2 Frame_Shift_Del p.T977Pfs*3 0.14 TCGA-38-4632-01 16 28856035 28856035 G A TUFM Missense_Mutation p.A223V 0.06 deleterious(0) probably_damaging(0.998) TCGA-38-4632-01 16 30199766 30199766 G A CORO1A Missense_Mutation p.D384N 0.13 tolerated(1) benign(0.002) TCGA-38-4632-01 16 49670063 49670063 C A ZNF423 Missense_Mutation p.E1000D 0.11 deleterious(0) probably_damaging(0.99) TCGA-38-4632-01 16 53686885 53686885 T G RPGRIP1L Missense_Mutation p.I572L 0.07 deleterious(0) benign(0.348) TCGA-38-4632-01 16 54966343 54966343 T G IRX5 Intron 0.39 TCGA-38-4632-01 16 58437222 58437222 A T GINS3 Missense_Mutation p.Q175L 0.19 deleterious(0.01) benign(0.044) TCGA-38-4632-01 16 68104916 68104916 G T DUS2 Missense_Mutation p.V239L 0.20 deleterious(0) possibly_damaging(0.854) TCGA-38-4632-01 16 70975570 70975570 C A HYDIN Missense_Mutation p.K2274N 0.12 probably_damaging(0.978) TCGA-38-4632-01 16 71007878 71007878 T A HYDIN Missense_Mutation p.T1695S 0.12 benign(0.125) TCGA-38-4632-01 16 77389879 77389879 G A ADAMTS18 Missense_Mutation p.S473L 0.21 deleterious(0) possibly_damaging(0.904) TCGA-38-4632-01 16 83813620 83813620 G A CDH13 Missense_Mutation p.D624N 0.23 deleterious(0) probably_damaging(0.999) TCGA-38-4632-01 16 84215065 84215065 G A TAF1C Missense_Mutation p.R371W 0.26 deleterious(0) possibly_damaging(0.529) TCGA-38-4632-01 16 84914128 84914128 G C CRISPLD2 Missense_Mutation p.A415P 0.20 tolerated(0.32) benign(0.12) TCGA-38-4632-01 16 86601062 86601062 T C FOXC2 Missense_Mutation p.Y41H 0.37 deleterious(0) probably_damaging(0.994) TCGA-38-4632-01 16 929612 929612 C A LMF1 Silent p.R285R 0.17 TCGA-38-4632-01 17 11584038 11584038 A G DNAH9 Splice_Site p.X1193_splice 0.15 TCGA-38-4632-01 17 1518296 1518296 G A SLC43A2 Missense_Mutation p.A134V 0.20 deleterious(0) probably_damaging(0.934) TCGA-38-4632-01 17 16875341 16875341 G A TNFRSF13B Nonsense_Mutation p.Q17* 0.45 TCGA-38-4632-01 17 21730961 21730961 C A UBBP4 Missense_Mutation p.T88N 0.09 deleterious(0.02) possibly_damaging(0.669) TCGA-38-4632-01 17 26109073 26109073 G T NOS2 Missense_Mutation p.H230Q 0.21 deleterious(0) probably_damaging(1) TCGA-38-4632-01 17 28599584 28599585 CA TTT BLMH Frame_Shift_Ins p.M341Kfs*5 0.22 TCGA-38-4632-01 17 36707475 36707475 G A SRCIN1 Missense_Mutation p.P960S 0.09 tolerated(0.31) benign(0.007) TCGA-38-4632-01 17 37566045 37566045 G T MED1 Missense_Mutation p.S810Y 0.10 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-38-4632-01 17 39553533 39553533 G T KRT31 Missense_Mutation p.L87I 0.15 deleterious(0) benign(0.088) TCGA-38-4632-01 17 43323889 43323889 T G FMNL1 Missense_Mutation p.F1077V 0.08 deleterious(0.01) possibly_damaging(0.694) TCGA-38-4632-01 17 45748181 45748181 C T KPNB1 Silent p.L510L 0.09 TCGA-38-4632-01 17 48166490 48166490 G T ITGA3 Missense_Mutation p.R1021L 0.16 deleterious(0) possibly_damaging(0.905) TCGA-38-4632-01 17 56355387 56355387 G A MPO Silent p.S335S 0.12 TCGA-38-4632-01 17 57289749 57289749 A C SMG8 Missense_Mutation p.S603R 0.25 deleterious(0) probably_damaging(0.999) TCGA-38-4632-01 17 61890703 61890703 G T DDX42 Silent p.V597V 0.06 TCGA-38-4632-01 17 62049725 62049725 C A SCN4A Missense_Mutation p.V127L 0.21 deleterious(0.03) benign(0.005) TCGA-38-4632-01 17 72537713 72537713 G A CD300C 3'UTR 0.11 TCGA-38-4632-01 17 74729667 74729667 G T METTL23 Nonsense_Mutation p.E158* 0.23 TCGA-38-4632-01 17 7578455 7578455 C G TP53 Missense_Mutation p.A159P 0.47 deleterious(0) probably_damaging(0.991) TCGA-38-4632-01 17 76794540 76794540 G C USP36 Missense_Mutation p.H1112D 0.20 deleterious(0) probably_damaging(0.999) TCGA-38-4632-01 17 77079624 77079624 C T ENGASE Silent p.V401V 0.13 TCGA-38-4632-01 18 13825819 13825819 G T MC5R Missense_Mutation p.G19C 0.41 deleterious(0.01) possibly_damaging(0.721) TCGA-38-4632-01 18 14542897 14542897 A G POTEC Silent p.S83S 0.28 TCGA-38-4632-01 18 18622550 18622550 C - ROCK1 Frame_Shift_Del p.V266Yfs*8 0.15 TCGA-38-4632-01 18 30093391 30093391 C G WBP11P1 RNA 0.33 TCGA-38-4632-01 18 34298531 34298531 G A FHOD3 Nonsense_Mutation p.W915* 0.20 TCGA-38-4632-01 18 46385872 46385872 C G CTIF Missense_Mutation p.P582R 0.20 deleterious(0) probably_damaging(0.999) TCGA-38-4632-01 18 47329193 47329193 G C ACAA2 Missense_Mutation p.P16R 0.18 deleterious(0) probably_damaging(0.961) TCGA-38-4632-01 18 5290937 5290937 G C ZBTB14 Missense_Mutation p.Q424E 0.32 tolerated_low_confidence(0.09) benign(0.262) TCGA-38-4632-01 18 66504245 66504245 A T CCDC102B Missense_Mutation p.K82M 0.26 deleterious(0) probably_damaging(0.996) TCGA-38-4632-01 19 12691647 12691647 G C ZNF490 Silent p.G414G 0.13 TCGA-38-4632-01 19 12774515 12774515 A - MAN2B1 Splice_Site p.X255_splice 0.31 TCGA-38-4632-01 19 15052430 15052430 C A OR7C2 Missense_Mutation p.L44I 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.611) TCGA-38-4632-01 19 15083520 15083520 A T SLC1A6 Missense_Mutation p.I68N 0.16 deleterious(0) possibly_damaging(0.773) TCGA-38-4632-01 19 1785468 1785468 C A ATP8B3 Missense_Mutation p.E1131D 0.14 deleterious(0.01) probably_damaging(0.983) TCGA-38-4632-01 19 19749277 19749277 T C GMIP Silent p.K184K 0.18 TCGA-38-4632-01 19 2109914 2109914 T A AP3D1 Missense_Mutation p.H1103L 0.08 tolerated(0.72) benign(0.036) TCGA-38-4632-01 19 30106349 30106349 C T POP4 3'UTR 0.42 TCGA-38-4632-01 19 37382996 37382996 T A ZNF829 Missense_Mutation p.I314F 0.05 deleterious(0) possibly_damaging(0.719) TCGA-38-4632-01 19 38960040 38960040 C A RYR1 Missense_Mutation p.L1218I 0.13 probably_damaging(0.968) TCGA-38-4632-01 19 39591613 39591613 C A PAPL Silent p.R278R 0.34 TCGA-38-4632-01 19 40412002 40412002 C G FCGBP Missense_Mutation p.G1209A 0.35 probably_damaging(0.963) TCGA-38-4632-01 19 41113371 41113371 C G LTBP4 Missense_Mutation p.C431W 0.47 deleterious(0) probably_damaging(0.999) TCGA-38-4632-01 19 4157097 4157097 G A CREB3L3 Missense_Mutation p.G88S 0.12 deleterious(0.03) benign(0.223) TCGA-38-4632-01 19 4325419 4325419 G A STAP2 Missense_Mutation p.P318L 0.15 deleterious(0.02) benign(0.188) TCGA-38-4632-01 19 43411745 43411745 A G PSG6 Missense_Mutation p.V323A 0.25 deleterious(0.03) possibly_damaging(0.626) TCGA-38-4632-01 19 43430607 43430607 A G PSG7 Missense_Mutation p.V324A 0.08 deleterious(0.04) benign(0.421) TCGA-38-4632-01 19 44933335 44933335 C A ZNF229 Nonsense_Mutation p.G541* 0.05 TCGA-38-4632-01 19 45976290 45976290 C G FOSB 3'UTR 0.18 TCGA-38-4632-01 19 50661573 50661573 G T IZUMO2 Missense_Mutation p.H150N 0.18 tolerated(0.24) benign(0.216) TCGA-38-4632-01 19 50804968 50804968 G A MYH14 Silent p.K1840K 0.16 TCGA-38-4632-01 19 54544207 54544207 T C VSTM1 3'UTR 0.17 TCGA-38-4632-01 19 55447801 55447801 T C NLRP7 Splice_Site p.X710_splice 0.31 TCGA-38-4632-01 19 57327451 57327451 C T PEG3 Missense_Mutation p.A787T 0.24 tolerated(0.24) benign(0.032) TCGA-38-4632-01 19 57867648 57867648 G T ZNF304 Missense_Mutation p.K137N 0.17 tolerated(0.09) benign(0.345) TCGA-38-4632-01 19 57888789 57888789 G T ZNF547 Missense_Mutation p.V149F 0.31 tolerated(0.98) possibly_damaging(0.77) TCGA-38-4632-01 19 58089425 58089425 C A ZNF416 Missense_Mutation p.Q25H 0.21 deleterious(0) benign(0.091) TCGA-38-4632-01 19 58145268 58145268 G A ZNF211 Intron 0.35 TCGA-38-4632-01 19 59027778 59027778 G T ZBTB45 Missense_Mutation p.H421Q 0.21 deleterious(0) probably_damaging(1) TCGA-38-4632-01 19 59059178 59059178 G A TRIM28 Missense_Mutation p.V287I 0.18 tolerated(0.11) benign(0.177) TCGA-38-4632-01 19 59067459 59067459 T A UBE2M Missense_Mutation p.K183N 0.15 deleterious(0) possibly_damaging(0.766) TCGA-38-4632-01 19 6921732 6921732 G T EMR1 Missense_Mutation p.Q543H 0.15 deleterious(0.02) benign(0.019) TCGA-38-4632-01 19 7809059 7809059 A G CD209 Missense_Mutation p.M316T 0.16 deleterious(0) probably_damaging(0.919) TCGA-38-4632-01 19 8527445 8527445 G A HNRNPM Missense_Mutation p.D106N 0.26 deleterious(0) possibly_damaging(0.883) TCGA-38-4632-01 19 9038377 9038377 C G MUC16 Intron 0.18 TCGA-38-4632-01 19 9324917 9324917 C T OR7D4 Silent p.L199L 0.28 TCGA-38-4632-01 19 9677032 9677032 C A ZNF121 Nonsense_Mutation p.E253* 0.11 TCGA-38-4632-01 1 10207112 10207112 A T UBE4B Missense_Mutation p.Q852L 0.27 deleterious(0) possibly_damaging(0.636) TCGA-38-4632-01 1 10355764 10355764 G T KIF1B Missense_Mutation p.G527W 0.17 deleterious(0) probably_damaging(1) TCGA-38-4632-01 1 103573670 103573670 A T COL11A1 Missense_Mutation p.L22H 0.15 probably_damaging(0.959) TCGA-38-4632-01 1 109643075 109643075 G T TMEM167B 3'Flank 0.14 TCGA-38-4632-01 1 111998816 111998816 A G ATP5F1 Missense_Mutation p.Y111C 0.05 deleterious(0) probably_damaging(0.969) TCGA-38-4632-01 1 115256529 115256529 T A NRAS Missense_Mutation p.Q61L 0.52 deleterious(0) benign(0.109) TCGA-38-4632-01 1 119467342 119467342 T A TBX15 Missense_Mutation p.D101V 0.23 deleterious(0) possibly_damaging(0.896) TCGA-38-4632-01 1 145561885 145561885 C G ANKRD35 Missense_Mutation p.P525A 0.07 tolerated(0.11) benign(0.001) TCGA-38-4632-01 1 148024890 148024890 T C NBPF14 Missense_Mutation p.E42G 0.22 deleterious(0) possibly_damaging(0.888) TCGA-38-4632-01 1 150199078 150199078 C G ANP32E Silent p.P181P 0.25 TCGA-38-4632-01 1 152326607 152326607 C A FLG2 Missense_Mutation p.G1219C 0.25 unknown(0) TCGA-38-4632-01 1 152326608 152326608 C A FLG2 Missense_Mutation p.L1218F 0.26 unknown(0) TCGA-38-4632-01 1 15844850 15844850 A C CASP9 Missense_Mutation p.L58R 0.21 deleterious(0) probably_damaging(1) TCGA-38-4632-01 1 158592846 158592846 C T SPTA1 Missense_Mutation p.R2016H 0.27 tolerated(0.05) benign(0.069) TCGA-38-4632-01 1 158595971 158595971 C G SPTA1 Missense_Mutation p.D1959H 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-38-4632-01 1 158617448 158617448 G A SPTA1 Silent p.D1259D 0.05 TCGA-38-4632-01 1 158724939 158724939 T A OR6K6 Missense_Mutation p.C112S 0.04 tolerated(0.23) benign(0) TCGA-38-4632-01 1 158736121 158736121 T C OR6N1 Missense_Mutation p.M118V 0.11 deleterious(0) possibly_damaging(0.542) TCGA-38-4632-01 1 159799686 159799686 A T SLAMF8 Missense_Mutation p.Q24L 0.35 deleterious(0.01) benign(0.031) TCGA-38-4632-01 1 161518430 161518430 A G FCGR3A Missense_Mutation p.W70R 0.23 deleterious(0) probably_damaging(0.999) TCGA-38-4632-01 1 161600996 161600996 T A FCGR3B 5'UTR 0.46 TCGA-38-4632-01 1 167032937 167032937 C A GPA33 Missense_Mutation p.E151D 0.07 tolerated(0.2) possibly_damaging(0.565) TCGA-38-4632-01 1 169586542 169586542 C T SELP Missense_Mutation p.A69T 0.30 deleterious(0) probably_damaging(1) TCGA-38-4632-01 1 169798428 169798428 C G C1orf112 Missense_Mutation p.F384L 0.06 deleterious(0.04) probably_damaging(0.999) TCGA-38-4632-01 1 17023377 17023377 G T ESPNP RNA 0.30 TCGA-38-4632-01 1 175372466 175372466 C T TNR Silent p.R262R 0.26 TCGA-38-4632-01 1 176525310 176525310 G A PAPPA2 5'UTR 0.24 TCGA-38-4632-01 1 176525707 176525707 C A PAPPA2 Silent p.P83P 0.33 TCGA-38-4632-01 1 176564446 176564446 T A PAPPA2 Missense_Mutation p.V569D 0.14 deleterious(0) possibly_damaging(0.653) TCGA-38-4632-01 1 176915133 176915133 C A ASTN1 Silent p.G726G 0.19 TCGA-38-4632-01 1 179820017 179820017 C A TOR1AIP2 Missense_Mutation p.E172D 0.29 tolerated(0.09) benign(0.013) TCGA-38-4632-01 1 180158700 180158700 G T QSOX1 Missense_Mutation p.R344L 0.04 deleterious(0) possibly_damaging(0.636) TCGA-38-4632-01 1 181763998 181763998 A T CACNA1E Splice_Site p.X2010_splice 0.12 TCGA-38-4632-01 1 196227561 196227561 G C KCNT2 Missense_Mutation p.H992D 0.23 tolerated(0.22) benign(0.013) TCGA-38-4632-01 1 196303087 196303087 A - KCNT2 Frame_Shift_Del p.I629Mfs*5 0.20 TCGA-38-4632-01 1 196395074 196395074 C A KCNT2 Missense_Mutation p.Q343H 0.25 deleterious(0.02) benign(0.166) TCGA-38-4632-01 1 197237509 197237509 G T CRB1 5'UTR 0.18 TCGA-38-4632-01 1 198725263 198725263 C A PTPRC Missense_Mutation p.H1292N 0.46 tolerated(0.62) benign(0.005) TCGA-38-4632-01 1 19983389 19983389 G A MINOS1-NBL1 Missense_Mutation p.V105M 0.32 tolerated(0.2) benign(0.005) TCGA-38-4632-01 1 201081551 201081551 G A CACNA1S 5'UTR 0.17 TCGA-38-4632-01 1 201860534 201860534 G T SHISA4 Nonsense_Mutation p.E129* 0.38 TCGA-38-4632-01 1 205042200 205042200 T C CNTN2 Missense_Mutation p.L950P 0.16 deleterious(0) probably_damaging(0.999) TCGA-38-4632-01 1 205042201 205042201 G T CNTN2 Silent p.L950L 0.16 TCGA-38-4632-01 1 207867945 207867945 T C CR1L Silent p.N237N 0.21 TCGA-38-4632-01 1 22902862 22902870 CCTGCGCGA - EPHA8 In_Frame_Del p.L105_D107del 0.44 TCGA-38-4632-01 1 229772435 229772435 G T URB2 Missense_Mutation p.R692L 0.33 tolerated(0.7) benign(0.001) TCGA-38-4632-01 1 235505515 235505515 G T GGPS1 Missense_Mutation p.A111S 0.17 deleterious(0.03) possibly_damaging(0.463) TCGA-38-4632-01 1 237711773 237711773 G A RYR2 Silent p.L983L 0.44 TCGA-38-4632-01 1 237875121 237875121 A T RYR2 Missense_Mutation p.K3436M 0.29 probably_damaging(0.954) TCGA-38-4632-01 1 240371074 240371074 C A FMN2 Missense_Mutation p.P988T 0.20 unknown(0) TCGA-38-4632-01 1 247587738 247587738 C T NLRP3 Silent p.L331L 0.24 TCGA-38-4632-01 1 247614592 247614592 C A OR2B11 Missense_Mutation p.R231S 0.21 deleterious(0.03) benign(0.089) TCGA-38-4632-01 1 247614655 247614655 G A OR2B11 Silent p.F210F 0.20 TCGA-38-4632-01 1 247875162 247875162 T A OR6F1 Missense_Mutation p.E299V 0.23 deleterious(0.03) benign(0.382) TCGA-38-4632-01 1 247978434 247978434 T A OR14A16 Missense_Mutation p.I200F 0.14 tolerated(1) benign(0.048) TCGA-38-4632-01 1 248058993 248058993 C A OR2W3 Nonsense_Mutation p.Y35* 0.33 TCGA-38-4632-01 1 248512748 248512748 C A OR14C36 Silent p.L224L 0.15 TCGA-38-4632-01 1 248636741 248636741 C A OR2T3 Silent p.A30A 0.12 TCGA-38-4632-01 1 28920492 28920492 G A RAB42 Missense_Mutation p.A61T 0.25 tolerated(1) benign(0.038) TCGA-38-4632-01 1 34033332 34033332 G T CSMD2 Missense_Mutation p.N2724K 0.36 deleterious(0) probably_damaging(0.992) TCGA-38-4632-01 1 35652807 35652807 C A SFPQ Nonsense_Mutation p.G621* 0.06 TCGA-38-4632-01 1 38274837 38274837 C T C1orf122 3'UTR 0.49 TCGA-38-4632-01 1 40701600 40701600 G A RLF Missense_Mutation p.R409K 0.13 tolerated(0.39) possibly_damaging(0.889) TCGA-38-4632-01 1 40758147 40758147 C T ZMPSTE24 Missense_Mutation p.R412C 0.09 deleterious(0) probably_damaging(1) TCGA-38-4632-01 1 62175007 62175007 C T TM2D1 Missense_Mutation p.R176Q 0.11 tolerated(0.06) possibly_damaging(0.56) TCGA-38-4632-01 1 67559010 67559010 T A C1orf141 Missense_Mutation p.D294V 0.48 deleterious(0.03) benign(0.013) TCGA-38-4632-01 1 67724401 67724401 G A IL23R Missense_Mutation p.E494K 0.47 tolerated(0.78) benign(0.006) TCGA-38-4632-01 1 70385469 70385469 G T LRRC7 Intron 0.60 TCGA-38-4632-01 1 75102097 75102097 G C C1orf173 Missense_Mutation p.P157R 0.06 deleterious(0) probably_damaging(1) TCGA-38-4632-01 1 78189129 78189129 C A USP33 Splice_Site p.X457_splice 0.14 TCGA-38-4632-01 1 84417625 84417625 T A TTLL7 Silent p.T20T 0.23 TCGA-38-4632-01 1 90178352 90178352 G T LRRC8C Missense_Mutation p.V75F 0.41 tolerated(0.72) benign(0.021) TCGA-38-4632-01 1 90399291 90399291 G T LRRC8D Nonsense_Mutation p.E222* 0.39 TCGA-38-4632-01 1 93812179 93812179 G T DR1 5'UTR 0.29 TCGA-38-4632-01 1 98058934 98058934 G T DPYD Missense_Mutation p.A323D 0.21 tolerated(0.1) benign(0.028) TCGA-38-4632-01 20 23425464 23425464 C A CSTL1 Silent p.L129L 0.35 TCGA-38-4632-01 20 2844701 2844701 G T VPS16 Missense_Mutation p.G528V 0.13 deleterious(0.01) possibly_damaging(0.58) TCGA-38-4632-01 20 31577467 31577467 C - SUN5 Frame_Shift_Del p.G191Efs*11 0.14 TCGA-38-4632-01 20 3214271 3214271 C A SLC4A11 Missense_Mutation p.K249N 0.09 tolerated(0.28) probably_damaging(0.979) TCGA-38-4632-01 20 35060432 35060432 C A DLGAP4 Silent p.L104L 0.09 TCGA-38-4632-01 20 35060433 35060433 C A DLGAP4 Missense_Mutation p.L105M 0.10 deleterious(0) probably_damaging(0.999) TCGA-38-4632-01 20 3653196 3653196 G C ADAM33 Missense_Mutation p.C463W 0.12 deleterious(0) probably_damaging(0.999) TCGA-38-4632-01 20 37356308 37356308 G A SLC32A1 Missense_Mutation p.G202S 0.18 deleterious(0) probably_damaging(0.996) TCGA-38-4632-01 20 37384668 37384668 G C ACTR5 Missense_Mutation p.D388H 0.17 tolerated(0.08) probably_damaging(0.984) TCGA-38-4632-01 20 41101140 41101140 G T PTPRT Missense_Mutation p.Q406K 0.11 deleterious(0.02) probably_damaging(0.93) TCGA-38-4632-01 20 50781293 50781293 C T ZFP64 Missense_Mutation p.C151Y 0.18 deleterious(0) probably_damaging(0.993) TCGA-38-4632-01 20 56139650 56139650 T A PCK1 Missense_Mutation p.F433L 0.13 deleterious(0.02) possibly_damaging(0.775) TCGA-38-4632-01 20 58349510 58349510 A T PHACTR3 Missense_Mutation p.Q380L 0.10 tolerated(0.11) possibly_damaging(0.632) TCGA-38-4632-01 20 61150803 61150803 C A C20orf166 5'UTR 0.10 TCGA-38-4632-01 20 61150804 61150804 C A C20orf166 5'UTR 0.10 TCGA-38-4632-01 21 19775907 19775907 A T TMPRSS15 Missense_Mutation p.H11Q 0.13 tolerated(0.09) benign(0.14) TCGA-38-4632-01 21 32410763 32410763 G A KRTAP19-8 5'UTR 0.05 TCGA-38-4632-01 21 41384892 41384893 - A DSCAM 3'UTR 0.28 TCGA-38-4632-01 21 45971197 45971197 G C KRTAP10-2 Missense_Mutation p.P49A 0.08 deleterious(0) possibly_damaging(0.857) TCGA-38-4632-01 22 21158629 21158629 C G PI4KA Missense_Mutation p.V474L 0.13 tolerated(1) benign(0.004) TCGA-38-4632-01 22 23627343 23627343 G C BCR Missense_Mutation p.L787F 0.26 deleterious(0.01) benign(0.154) TCGA-38-4632-01 22 26343716 26343716 G T MYO18B Silent p.A1890A 0.14 TCGA-38-4632-01 22 36737461 36737462 - G MYH9 Frame_Shift_Ins p.H149Sfs*27 0.11 TCGA-38-4632-01 22 37771374 37771374 G C ELFN2 Silent p.L67L 0.13 TCGA-38-4632-01 22 50716360 50716360 A T PLXNB2 Missense_Mutation p.F1657Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-38-4632-01 2 100038094 100038094 A G REV1 Silent p.A566A 0.08 TCGA-38-4632-01 2 10282453 10282453 G C C2orf48 Missense_Mutation p.R48S 0.11 tolerated_low_confidence(0.6) benign(0.402) TCGA-38-4632-01 2 103068613 103068613 G A IL18RAP Missense_Mutation p.G591E 0.13 tolerated(0.29) benign(0.021) TCGA-38-4632-01 2 103300683 103300683 G T SLC9A2 Missense_Mutation p.R438L 0.14 deleterious(0) probably_damaging(0.999) TCGA-38-4632-01 2 108626708 108626708 T A SLC5A7 Silent p.V378V 0.14 TCGA-38-4632-01 2 119750829 119750829 G T MARCO Missense_Mutation p.R461L 0.16 deleterious(0) unknown(0) TCGA-38-4632-01 2 119752155 119752155 G A MARCO 3'UTR 0.21 TCGA-38-4632-01 2 125367443 125367443 G C CNTNAP5 Missense_Mutation p.D607H 0.15 deleterious(0.01) probably_damaging(0.97) TCGA-38-4632-01 2 125671823 125671823 G T CNTNAP5 Missense_Mutation p.L1293F 0.13 tolerated(0.31) possibly_damaging(0.796) TCGA-38-4632-01 2 128324254 128324254 T A MYO7B Missense_Mutation p.F108I 0.25 deleterious(0) possibly_damaging(0.872) TCGA-38-4632-01 2 12858618 12858618 G A TRIB2 Missense_Mutation p.G62E 0.15 deleterious(0) probably_damaging(0.978) TCGA-38-4632-01 2 131356293 131356293 G T CFC1 Missense_Mutation p.H57N 0.22 tolerated(1) benign(0.002) TCGA-38-4632-01 2 131704278 131704278 G C ARHGEF4 Intron 0.27 TCGA-38-4632-01 2 136570111 136570111 C A LCT Missense_Mutation p.G708V 0.12 deleterious(0.01) probably_damaging(0.985) TCGA-38-4632-01 2 137872775 137872775 G A THSD7B Silent p.T427T 0.12 TCGA-38-4632-01 2 141607774 141607774 G A LRP1B Silent p.D1612D 0.06 TCGA-38-4632-01 2 141641558 141641558 C T LRP1B Missense_Mutation p.G1333S 0.11 benign(0.013) TCGA-38-4632-01 2 143799619 143799619 G T KYNU Missense_Mutation p.D426Y 0.12 deleterious(0) probably_damaging(0.988) TCGA-38-4632-01 2 148602690 148602690 A T ACVR2A 5'UTR 0.24 TCGA-38-4632-01 2 152318785 152318785 T G RIF1 Missense_Mutation p.L1086R 0.12 deleterious(0) probably_damaging(1) TCGA-38-4632-01 2 166170433 166170433 A G SCN2A Missense_Mutation p.T400A 0.24 deleterious(0.05) probably_damaging(0.998) TCGA-38-4632-01 2 166847946 166847946 T C SCN1A Missense_Mutation p.I1947V 0.35 tolerated(0.52) benign(0) TCGA-38-4632-01 2 166848161 166848161 A G SCN1A Missense_Mutation p.V1875A 0.08 deleterious(0) probably_damaging(0.999) TCGA-38-4632-01 2 166894432 166894432 T C SCN1A Missense_Mutation p.M934V 0.15 deleterious(0) possibly_damaging(0.832) TCGA-38-4632-01 2 168104362 168104362 A G XIRP2 Missense_Mutation p.T2154A 0.14 benign(0.02) TCGA-38-4632-01 2 169985301 169985301 G A LRP2 Missense_Mutation p.P4614S 0.22 benign(0.002) TCGA-38-4632-01 2 173451116 173451116 G A PDK1 Silent p.L352L 0.08 TCGA-38-4632-01 2 177033942 177033942 T G HOXD3 Missense_Mutation p.Y34D 0.07 deleterious(0.01) probably_damaging(0.979) TCGA-38-4632-01 2 179434299 179434299 T A TTN Silent p.I25520I 0.14 TCGA-38-4632-01 2 179434300 179434300 A T TTN Missense_Mutation p.I25520K 0.14 TCGA-38-4632-01 2 179530103 179530103 C A TTN Splice_Site p.X12015_splice 0.16 TCGA-38-4632-01 2 179593801 179593801 A G TTN Missense_Mutation p.S6322P 0.26 TCGA-38-4632-01 2 179597013 179597015 GGT AG TTN Frame_Shift_Del p.T5561Lfs*3 0.09 TCGA-38-4632-01 2 183605029 183605029 C G DNAJC10 Missense_Mutation p.L331V 0.14 deleterious(0.03) benign(0.035) TCGA-38-4632-01 2 183699582 183699582 G T FRZB Silent p.R324R 0.30 TCGA-38-4632-01 2 197873684 197873684 T A ANKRD44 Nonsense_Mutation p.K641* 0.25 TCGA-38-4632-01 2 21228933 21228933 G T APOB Missense_Mutation p.H3603N 0.26 benign(0.011) TCGA-38-4632-01 2 233345169 233345169 C G ECEL1 Missense_Mutation p.R723P 0.17 tolerated(0.1) probably_damaging(0.992) TCGA-38-4632-01 2 233396061 233396061 G A CHRND Splice_Site p.X274_splice 0.06 TCGA-38-4632-01 2 238274647 238274647 A G COL6A3 Silent p.D1844D 0.20 TCGA-38-4632-01 2 241808615 241808615 A T AGXT Missense_Mutation p.Q65L 0.21 deleterious(0) probably_damaging(0.939) TCGA-38-4632-01 2 242429445 242429445 C G FARP2 Missense_Mutation p.I830M 0.26 deleterious(0.04) possibly_damaging(0.515) TCGA-38-4632-01 2 24929492 24929492 C A NCOA1 Silent p.R385R 0.14 TCGA-38-4632-01 2 27016122 27016122 G T CENPA Missense_Mutation p.R133L 0.31 deleterious(0) probably_damaging(0.996) TCGA-38-4632-01 2 27375715 27375715 C A TCF23 Missense_Mutation p.P209T 0.34 deleterious_low_confidence(0) possibly_damaging(0.554) TCGA-38-4632-01 2 27730148 27730148 G T GCKR Missense_Mutation p.M371I 0.09 tolerated(0.17) benign(0.001) TCGA-38-4632-01 2 32689617 32689617 C T BIRC6 Missense_Mutation p.A1661V 0.43 benign(0.411) TCGA-38-4632-01 2 32726951 32726951 G T BIRC6 Missense_Mutation p.R3068I 0.29 probably_damaging(0.951) TCGA-38-4632-01 2 32768471 32768471 C G BIRC6 Missense_Mutation p.P4152R 0.08 probably_damaging(0.951) TCGA-38-4632-01 2 32768555 32768555 A T BIRC6 Missense_Mutation p.H4180L 0.33 benign(0.047) TCGA-38-4632-01 2 33505174 33505174 C T LTBP1 Nonsense_Mutation p.Q1021* 0.35 TCGA-38-4632-01 2 33774801 33774801 G T RASGRP3 Nonsense_Mutation p.E509* 0.43 TCGA-38-4632-01 2 37289111 37289111 C T HEATR5B Nonsense_Mutation p.W556* 0.07 TCGA-38-4632-01 2 39982476 39982476 C A THUMPD2 Missense_Mutation p.G346V 0.23 deleterious(0) probably_damaging(0.995) TCGA-38-4632-01 2 40342676 40342676 A T SLC8A1 Missense_Mutation p.L880Q 0.18 deleterious(0) probably_damaging(1) TCGA-38-4632-01 2 50280416 50280416 A T NRXN1 Missense_Mutation p.I1414N 0.07 tolerated(0.06) benign(0.033) TCGA-38-4632-01 2 50280420 50280420 G T NRXN1 Missense_Mutation p.P1413T 0.07 tolerated_low_confidence(0.33) benign(0.012) TCGA-38-4632-01 2 50850508 50850508 C A NRXN1 Nonsense_Mutation p.G393* 0.12 TCGA-38-4632-01 2 7164598 7164598 G T RNF144A Missense_Mutation p.C203F 0.10 deleterious(0) probably_damaging(1) TCGA-38-4632-01 2 71743361 71743361 A G DYSF Missense_Mutation p.I314V 0.18 tolerated(0.15) benign(0.009) TCGA-38-4632-01 2 72359733 72359733 T C CYP26B1 Missense_Mutation p.K388E 0.33 deleterious(0.03) probably_damaging(0.914) TCGA-38-4632-01 2 73868332 73868332 G C NAT8 Missense_Mutation p.L142V 0.04 deleterious(0) probably_damaging(0.98) TCGA-38-4632-01 2 77746069 77746071 GAC CA LRRTM4 Frame_Shift_Del p.L308Ffs*30 0.21 TCGA-38-4632-01 2 79255038 79255038 G T REG3G Missense_Mutation p.G147W 0.09 deleterious(0) probably_damaging(0.997) TCGA-38-4632-01 2 86832183 86832183 C T RNF103 Missense_Mutation p.G281S 0.34 deleterious(0.01) possibly_damaging(0.737) TCGA-38-4632-01 2 89265778 89265778 G T IGKV1-6 3'Flank 0.11 TCGA-38-4632-01 2 89266063 89266063 G T IGKV1-6 Silent p.A23A 0.23 TCGA-38-4632-01 2 89416835 89416835 G T IGKV1-17 Missense_Mutation p.P117T 0.08 deleterious(0) probably_damaging(1) TCGA-38-4632-01 2 89544279 89544279 T G IGKV2-30 Missense_Mutation p.Q115H 0.09 deleterious(0.02) benign(0.204) TCGA-38-4632-01 2 95514947 95514947 G T RNU6-1320P 5'Flank 0.12 TCGA-38-4632-01 2 95815661 95815661 C A ZNF514 Missense_Mutation p.G190V 0.12 tolerated(0.29) benign(0.011) TCGA-38-4632-01 2 96781457 96781457 C A ADRA2B Silent p.S144S 0.33 TCGA-38-4632-01 2 96798292 96798292 G T ASTL Missense_Mutation p.N208K 0.34 tolerated(0.14) benign(0.233) TCGA-38-4632-01 2 98354099 98354099 G T ZAP70 Missense_Mutation p.A485S 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-38-4632-01 3 101390764 101390764 C A ZBTB11 Intron 0.28 TCGA-38-4632-01 3 119501603 119501603 G T NR1I2 5'UTR 0.37 TCGA-38-4632-01 3 120320105 120320105 G A NDUFB4 Splice_Site p.X109_splice 0.07 TCGA-38-4632-01 3 124720857 124720857 C A HEG1 Splice_Site p.X1119_splice 0.20 TCGA-38-4632-01 3 125876315 125876315 G T ALDH1L1 Silent p.S143S 0.12 TCGA-38-4632-01 3 128181837 128181837 G T DNAJB8 Missense_Mutation p.H84Q 0.17 tolerated(0.19) benign(0.005) TCGA-38-4632-01 3 128758690 128758690 G A EFCC1 Silent p.%3D 0.14 TCGA-38-4632-01 3 130292971 130292971 C A COL6A6 Missense_Mutation p.P1050Q 0.13 tolerated(0.09) benign(0.017) TCGA-38-4632-01 3 13361423 13361423 C A NUP210 Missense_Mutation p.W1741C 0.08 tolerated(0.06) benign(0.232) TCGA-38-4632-01 3 140281150 140281150 G T CLSTN2 Missense_Mutation p.G738C 0.14 deleterious(0.01) probably_damaging(1) TCGA-38-4632-01 3 142841065 142841065 C A CHST2 Missense_Mutation p.F469L 0.23 deleterious(0) probably_damaging(0.987) TCGA-38-4632-01 3 142985603 142985603 C A SLC9A9 Missense_Mutation p.G627C 0.20 deleterious(0) probably_damaging(0.964) TCGA-38-4632-01 3 147120537 147120537 G T ZIC4 Nonsense_Mutation p.Y66* 0.12 TCGA-38-4632-01 3 14862143 14862143 C A FGD5 Missense_Mutation p.T522K 0.22 tolerated(0.27) benign(0.26) TCGA-38-4632-01 3 161221370 161221370 C T OTOL1 Silent p.I358I 0.21 TCGA-38-4632-01 3 161221371 161221371 C T OTOL1 Missense_Mutation p.P359S 0.21 deleterious(0) probably_damaging(0.999) TCGA-38-4632-01 3 167045743 167045743 A T ZBBX Missense_Mutation p.H283Q 0.14 tolerated(0.43) benign(0.002) TCGA-38-4632-01 3 183645220 183645220 T A ABCC5 Silent p.L1315L 0.38 TCGA-38-4632-01 3 184039223 184039223 C G EIF4G1 Missense_Mutation p.S291C 0.13 deleterious(0.01) probably_damaging(0.991) TCGA-38-4632-01 3 184039251 184039251 A G EIF4G1 Missense_Mutation p.I300M 0.18 tolerated(0.17) benign(0.107) TCGA-38-4632-01 3 21706377 21706377 C A ZNF385D Splice_Site p.X55_splice 0.21 TCGA-38-4632-01 3 25622075 25622075 C G RARB Silent p.G216G 0.12 TCGA-38-4632-01 3 31617899 31617899 G C STT3B Missense_Mutation p.R109T 0.18 deleterious(0) probably_damaging(1) TCGA-38-4632-01 3 32207310 32207310 C T GPD1L Missense_Mutation p.P322S 0.23 deleterious(0) probably_damaging(1) TCGA-38-4632-01 3 42730470 42730470 C T KLHL40 Missense_Mutation p.R511C 0.16 tolerated(0.07) possibly_damaging(0.901) TCGA-38-4632-01 3 49168500 49168500 G C LAMB2 Missense_Mutation p.I266M 0.07 deleterious(0.01) probably_damaging(0.994) TCGA-38-4632-01 3 49308858 49308858 T C C3orf62 Missense_Mutation p.I187V 0.08 tolerated(0.11) probably_damaging(0.993) TCGA-38-4632-01 3 62739249 62739249 C G CADPS Missense_Mutation p.R252P 0.26 tolerated(0.09) possibly_damaging(0.453) TCGA-38-4632-01 3 63601172 63601172 C A SYNPR 3'UTR 0.19 TCGA-38-4632-01 3 68055731 68055731 C T FAM19A1 Intron 0.07 TCGA-38-4632-01 3 72799747 72799747 A T SHQ1 Missense_Mutation p.D474E 0.27 tolerated_low_confidence(0.13) benign(0.006) TCGA-38-4632-01 3 78656193 78656193 T A ROBO1 Splice_Site p.X1479_splice 0.09 TCGA-38-4632-01 3 85932594 85932594 G T CADM2 Splice_Site p.X124_splice 0.20 TCGA-38-4632-01 3 88040364 88040364 T A HTR1F Silent p.S155S 0.26 TCGA-38-4632-01 3 89259557 89259557 C A EPHA3 Missense_Mutation p.S234Y 0.20 deleterious(0) probably_damaging(0.987) TCGA-38-4632-01 4 100052734 100052734 G T ADH4 Missense_Mutation p.P255Q 0.30 deleterious(0) probably_damaging(1) TCGA-38-4632-01 4 103822347 103822347 C A SLC9B1 Missense_Mutation p.G492V 0.04 deleterious(0) probably_damaging(0.996) TCGA-38-4632-01 4 104004086 104004086 C A BDH2 Missense_Mutation p.G178V 0.37 deleterious(0) probably_damaging(0.985) TCGA-38-4632-01 4 114208779 114208779 C T ANK2 Missense_Mutation p.H700Y 0.22 probably_damaging(1) TCGA-38-4632-01 4 115544547 115544547 C T UGT8 Missense_Mutation p.P171S 0.17 deleterious(0.01) possibly_damaging(0.793) TCGA-38-4632-01 4 115749058 115749058 G T NDST4 Missense_Mutation p.H845N 0.17 deleterious(0.04) probably_damaging(0.972) TCGA-38-4632-01 4 126240578 126240578 C T FAT4 Silent p.T1004T 0.06 TCGA-38-4632-01 4 134071449 134071449 G T PCDH10 Missense_Mutation p.G52W 0.25 deleterious(0) possibly_damaging(0.868) TCGA-38-4632-01 4 155295093 155295093 C A DCHS2 Missense_Mutation p.M147I 0.22 tolerated(0.55) benign(0) TCGA-38-4632-01 4 15964478 15964478 C T FGFBP2 Nonsense_Mutation p.W92* 0.20 TCGA-38-4632-01 4 173804035 173804035 G T GALNTL6 Nonsense_Mutation p.E340* 0.20 TCGA-38-4632-01 4 176622815 176622815 A C GPM6A Silent p.G47G 0.14 TCGA-38-4632-01 4 177136756 177136756 G A ASB5 Nonsense_Mutation p.R329* 0.11 TCGA-38-4632-01 4 187115681 187115681 C G CYP4V2 Missense_Mutation p.T81R 0.23 tolerated(0.3) benign(0.125) TCGA-38-4632-01 4 187557842 187557842 C A FAT1 Missense_Mutation p.S1290I 0.15 probably_damaging(0.988) TCGA-38-4632-01 4 25382048 25382048 A G ANAPC4 Missense_Mutation p.N61S 0.19 tolerated(0.6) benign(0.01) TCGA-38-4632-01 4 39512309 39512309 G A UGDH Missense_Mutation p.A146V 0.26 deleterious(0.02) possibly_damaging(0.519) TCGA-38-4632-01 4 44638050 44638050 G T YIPF7 Missense_Mutation p.L81I 0.28 tolerated(0.2) benign(0.037) TCGA-38-4632-01 4 47034433 47034433 G T GABRB1 Splice_Site p.X58_splice 0.17 TCGA-38-4632-01 4 47408916 47408916 G T GABRB1 Missense_Mutation p.K351N 0.35 tolerated(0.18) benign(0.012) TCGA-38-4632-01 4 55127576 55127576 C A PDGFRA Missense_Mutation p.P122T 0.28 deleterious(0.02) benign(0.186) TCGA-38-4632-01 4 62897253 62897253 G A LPHN3 Missense_Mutation p.M1104I 0.15 deleterious(0.01) benign(0.03) TCGA-38-4632-01 4 70361447 70361447 C T UGT2B4 Missense_Mutation p.E45K 0.23 deleterious(0.04) benign(0.424) TCGA-38-4632-01 4 70361573 70361573 T A UGT2B4 Missense_Mutation p.M3L 0.15 tolerated(0.4) benign(0.001) TCGA-38-4632-01 4 72332163 72332163 C A SLC4A4 Silent p.G500G 0.11 TCGA-38-4632-01 4 76841001 76841001 T A NAAA Intron 0.14 TCGA-38-4632-01 4 85560132 85560132 T A CDS1 Missense_Mutation p.V289E 0.29 deleterious(0) possibly_damaging(0.812) TCGA-38-4632-01 4 88996906 88996906 G T PKD2 3'UTR 0.31 TCGA-38-4632-01 4 96762200 96762200 G T PDHA2 Missense_Mutation p.R300L 0.17 deleterious(0) probably_damaging(0.945) TCGA-38-4632-01 5 110843034 110843034 T A STARD4 Missense_Mutation p.K33M 0.13 deleterious(0) probably_damaging(0.97) TCGA-38-4632-01 5 115335492 115335492 A G AQPEP Missense_Mutation p.I470V 0.11 tolerated(1) benign(0.006) TCGA-38-4632-01 5 131007483 131007483 C A FNIP1 Missense_Mutation p.C885F 0.08 deleterious(0.05) probably_damaging(0.999) TCGA-38-4632-01 5 131312363 131312363 G C ACSL6 Nonsense_Mutation p.S323* 0.12 TCGA-38-4632-01 5 133914622 133914622 A - JADE2 Frame_Shift_Del p.D663Afs*5 0.14 TCGA-38-4632-01 5 135692748 135692748 G T TRPC7 Missense_Mutation p.L110M 0.23 deleterious(0) probably_damaging(1) TCGA-38-4632-01 5 137542338 137542338 G A CDC23 Silent p.A90A 0.10 TCGA-38-4632-01 5 140208228 140208228 A G PCDHA6 Missense_Mutation p.I184M 0.34 deleterious_low_confidence(0.01) benign(0.073) TCGA-38-4632-01 5 140475997 140475997 G A PCDHB2 Silent p.P541P 0.20 TCGA-38-4632-01 5 140536820 140536820 G T PCDHB17 Missense_Mutation p.R415M 0.19 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-38-4632-01 5 140574584 140574584 G A PCDHB10 3'UTR 0.38 TCGA-38-4632-01 5 140744720 140744720 G A PCDHGA5 Missense_Mutation p.G275R 0.12 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-38-4632-01 5 140755658 140755658 G T PCDHGA6 Missense_Mutation p.D670Y 0.15 deleterious_low_confidence(0) possibly_damaging(0.568) TCGA-38-4632-01 5 140811758 140811758 G C PCDHGA12 Missense_Mutation p.D478H 0.09 deleterious_low_confidence(0) probably_damaging(1) TCGA-38-4632-01 5 142779852 142779852 T A NR3C1 Missense_Mutation p.T185S 0.08 tolerated(1) benign(0.002) TCGA-38-4632-01 5 14462918 14462918 G T TRIO Missense_Mutation p.G1851W 0.50 possibly_damaging(0.836) TCGA-38-4632-01 5 146070805 146070805 T A PPP2R2B Splice_Site p.X115_splice 0.15 TCGA-38-4632-01 5 1474683 1474683 C A LPCAT1 Silent p.R339R 0.24 TCGA-38-4632-01 5 150276158 150276158 T C ZNF300 Missense_Mutation p.S231G 0.11 tolerated(0.4) benign(0.165) TCGA-38-4632-01 5 150905491 150905491 C T FAT2 Silent p.L3448L 0.17 TCGA-38-4632-01 5 153065836 153065836 C A GRIA1 Silent p.R371R 0.29 TCGA-38-4632-01 5 161524813 161524813 C A GABRG2 Missense_Mutation p.P166H 0.22 deleterious(0.03) probably_damaging(0.967) TCGA-38-4632-01 5 162918138 162918138 G T HMMR Missense_Mutation p.A716S 0.23 tolerated_low_confidence(0.79) benign(0) TCGA-38-4632-01 5 163534 163534 C A PLEKHG4B Missense_Mutation p.T760N 0.48 tolerated(0.45) benign(0.032) TCGA-38-4632-01 5 169714976 169714976 C G LCP2 Silent p.V62V 0.06 TCGA-38-4632-01 5 170235643 170235643 G A GABRP Missense_Mutation p.R240K 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-38-4632-01 5 175111326 175111326 C A HRH2 Intron 0.24 TCGA-38-4632-01 5 180048007 180048007 C T FLT4 Missense_Mutation p.G723E 0.21 deleterious(0) probably_damaging(1) TCGA-38-4632-01 5 23527331 23527331 A T PRDM9 Missense_Mutation p.R712W 0.14 deleterious(0.01) probably_damaging(0.984) TCGA-38-4632-01 5 32037441 32037441 C G PDZD2 Silent p.R504R 0.52 TCGA-38-4632-01 5 32789921 32789921 C G NPR3 3'UTR 0.15 TCGA-38-4632-01 5 35965971 35965971 T A UGT3A1 Missense_Mutation p.Q120H 0.12 tolerated(0.05) benign(0.071) TCGA-38-4632-01 5 36684013 36684013 C A SLC1A3 Missense_Mutation p.A446E 0.22 deleterious(0) probably_damaging(1) TCGA-38-4632-01 5 40964941 40964941 T G C7 Missense_Mutation p.D616E 0.10 tolerated(0.05) benign(0.182) TCGA-38-4632-01 5 5232586 5232586 G A ADAMTS16 Missense_Mutation p.G603R 0.41 deleterious(0) probably_damaging(0.996) TCGA-38-4632-01 5 5454709 5454709 A T KIAA0947 Missense_Mutation p.T217S 0.15 tolerated(0.51) benign(0.106) TCGA-38-4632-01 5 55059044 55059044 G T DDX4 Missense_Mutation p.G83C 0.08 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-38-4632-01 5 68695997 68695997 G A RAD17 Splice_Site p.X576_splice 0.17 TCGA-38-4632-01 5 71757220 71757220 C A ZNF366 Missense_Mutation p.R35L 0.20 tolerated_low_confidence(0.11) benign(0.089) TCGA-38-4632-01 5 75581080 75581080 C A SV2C Missense_Mutation p.A336D 0.16 deleterious(0.01) possibly_damaging(0.784) TCGA-38-4632-01 5 80369242 80369242 C T RASGRF2 Silent p.H286H 0.08 TCGA-38-4632-01 5 95748052 95748052 G T PCSK1 Silent p.A284A 0.14 TCGA-38-4632-01 6 101103674 101103674 A G ASCC3 Silent p.T908T 0.27 TCGA-38-4632-01 6 107533374 107533374 T G PDSS2 Missense_Mutation p.H272P 0.17 deleterious(0) probably_damaging(0.999) TCGA-38-4632-01 6 109954214 109954214 C A AK9 Missense_Mutation p.G389V 0.50 tolerated(0.42) benign(0) TCGA-38-4632-01 6 110522870 110522870 G T CDC40 Missense_Mutation p.R129M 0.11 tolerated(0.1) possibly_damaging(0.861) TCGA-38-4632-01 6 126080786 126080786 G T HEY2 Silent p.G284G 0.35 TCGA-38-4632-01 6 132054860 132054860 C T ENPP3 Missense_Mutation p.P696S 0.05 deleterious(0) probably_damaging(0.995) TCGA-38-4632-01 6 133802682 133802682 C A EYA4 Missense_Mutation p.S351Y 0.07 tolerated(0.38) benign(0.012) TCGA-38-4632-01 6 144803498 144803498 A G UTRN Missense_Mutation p.I1221V 0.09 deleterious(0.02) benign(0.163) TCGA-38-4632-01 6 160241522 160241522 G A PNLDC1 Silent p.A512A 0.19 TCGA-38-4632-01 6 2117778 2117778 C A GMDS Missense_Mutation p.V54L 0.26 tolerated_low_confidence(0.45) benign(0.001) TCGA-38-4632-01 6 25652524 25652524 C T SCGN 5'UTR 0.14 TCGA-38-4632-01 6 25777132 25777132 A G SLC17A4 Missense_Mutation p.I405V 0.06 tolerated(0.25) benign(0.034) TCGA-38-4632-01 6 26413399 26413399 G T BTN3A1 Missense_Mutation p.D341Y 0.21 deleterious(0) probably_damaging(0.976) TCGA-38-4632-01 6 26468861 26468861 G A BTN2A1 3'UTR 0.28 TCGA-38-4632-01 6 29408414 29408414 T C OR10C1 Missense_Mutation p.C208R 0.27 deleterious(0.04) possibly_damaging(0.721) TCGA-38-4632-01 6 30955046 30955046 C A MUC21 Missense_Mutation p.S365Y 0.25 deleterious(0.01) unknown(0) TCGA-38-4632-01 6 30955047 30955047 C A MUC21 Silent p.S365S 0.25 TCGA-38-4632-01 6 31903837 31903837 A G C2 Silent p.K329K 0.14 TCGA-38-4632-01 6 33367932 33367932 C T KIFC1 Intron 0.21 TCGA-38-4632-01 6 350824 350824 G T DUSP22 Missense_Mutation p.A171S 0.12 tolerated(0.3) benign(0.018) TCGA-38-4632-01 6 37620084 37620084 C A MDGA1 Missense_Mutation p.D339Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-38-4632-01 6 43306991 43306991 T A ZNF318 Missense_Mutation p.E1582V 0.12 unknown(0) TCGA-38-4632-01 6 44081627 44081627 C T MRPL14 Missense_Mutation p.E131K 0.12 tolerated(0.65) benign(0.328) TCGA-38-4632-01 6 56035886 56035886 A T COL21A1 Missense_Mutation p.D227E 0.32 deleterious(0.04) possibly_damaging(0.751) TCGA-38-4632-01 6 70034899 70034899 T C BAI3 Silent p.L984L 0.15 TCGA-38-4632-01 6 74063858 74063858 G T DPPA5 Silent p.R31R 0.32 TCGA-38-4632-01 6 74123509 74123509 G T DDX43 Splice_Site p.X499_splice 0.50 TCGA-38-4632-01 6 84872875 84872875 C G KIAA1009 Missense_Mutation p.A834P 0.32 deleterious(0.01) probably_damaging(0.943) TCGA-38-4632-01 7 100473278 100473278 T A SRRT Missense_Mutation p.Y23N 0.12 tolerated(1) unknown(0) TCGA-38-4632-01 7 100856219 100856219 C A PLOD3 Missense_Mutation p.Q261H 0.15 tolerated(0.61) benign(0.003) TCGA-38-4632-01 7 107557757 107557757 G A DLD Silent p.L362L 0.24 TCGA-38-4632-01 7 107642135 107642135 G T LAMB1 Missense_Mutation p.S27R 0.17 tolerated(0.42) possibly_damaging(0.536) TCGA-38-4632-01 7 108213544 108213544 A G DNAJB9 Missense_Mutation p.H140R 0.26 deleterious(0.01) possibly_damaging(0.894) TCGA-38-4632-01 7 11441426 11441426 A G THSD7A Silent p.C1469C 0.10 TCGA-38-4632-01 7 128848686 128848686 C A SMO Missense_Mutation p.R451S 0.44 deleterious(0) probably_damaging(0.999) TCGA-38-4632-01 7 137792057 137792057 G C AKR1D1 Intron 0.19 TCGA-38-4632-01 7 141767216 141767216 C T MGAM Intron 0.23 TCGA-38-4632-01 7 142637531 142637531 C A C7orf34 Missense_Mutation p.Q101K 0.42 tolerated(0.92) benign(0) TCGA-38-4632-01 7 142919937 142919937 T C TAS2R40 Missense_Mutation p.Y256H 0.08 deleterious(0) probably_damaging(0.999) TCGA-38-4632-01 7 143056027 143056027 C A FAM131B Missense_Mutation p.G120V 0.28 tolerated(0.06) possibly_damaging(0.795) TCGA-38-4632-01 7 143657496 143657496 G T OR2F1 Missense_Mutation p.A145S 0.09 deleterious(0.04) benign(0.394) TCGA-38-4632-01 7 143826981 143826981 T A OR2A14 Missense_Mutation p.M259K 0.09 deleterious(0) possibly_damaging(0.876) TCGA-38-4632-01 7 143827000 143827000 T C OR2A14 Silent p.H265H 0.47 TCGA-38-4632-01 7 144060384 144060384 G A ARHGEF5 Missense_Mutation p.E208K 0.10 tolerated(0.41) benign(0.018) TCGA-38-4632-01 7 146805426 146805426 C A CNTNAP2 Silent p.V246V 0.24 TCGA-38-4632-01 7 149481971 149481971 G T SSPO RNA 0.09 TCGA-38-4632-01 7 149492318 149492318 G T SSPO RNA 0.22 TCGA-38-4632-01 7 150839629 150839630 GG TTT AGAP3 Frame_Shift_Ins p.A728Ffs*28 0.17 TCGA-38-4632-01 7 151874238 151874238 C A KMT2C Missense_Mutation p.G2767V 0.12 probably_damaging(0.946) TCGA-38-4632-01 7 154379836 154379836 C A DPP6 Intron 0.22 TCGA-38-4632-01 7 18705919 18705919 G T HDAC9 Silent p.A517A 0.21 TCGA-38-4632-01 7 20687653 20687653 G T ABCB5 Silent p.V386V 0.35 TCGA-38-4632-01 7 20698250 20698250 C A ABCB5 Missense_Mutation p.S553Y 0.32 deleterious(0) probably_damaging(1) TCGA-38-4632-01 7 22532984 22532984 G A STEAP1B Nonsense_Mutation p.R186* 0.28 TCGA-38-4632-01 7 29440373 29440373 A G CHN2 Missense_Mutation p.R169G 0.24 deleterious(0.02) benign(0.063) TCGA-38-4632-01 7 31378648 31378648 G T NEUROD6 Missense_Mutation p.L79I 0.04 deleterious(0.03) benign(0.014) TCGA-38-4632-01 7 31617894 31617894 G A CCDC129 Missense_Mutation p.C365Y 0.11 tolerated(1) benign(0.015) TCGA-38-4632-01 7 34118560 34118560 G A BMPER Silent p.L390L 0.06 TCGA-38-4632-01 7 36396649 36396649 T A KIAA0895 Missense_Mutation p.K243N 0.14 deleterious(0) probably_damaging(0.998) TCGA-38-4632-01 7 36464304 36464304 A G ANLN Missense_Mutation p.K888E 0.25 deleterious(0.01) probably_damaging(0.987) TCGA-38-4632-01 7 37927904 37927904 A G NME8 Missense_Mutation p.S425G 0.07 tolerated(0.21) benign(0.044) TCGA-38-4632-01 7 38462040 38462040 T A AMPH Missense_Mutation p.Q418L 0.03 deleterious(0.02) benign(0.005) TCGA-38-4632-01 7 38725088 38725088 C A FAM183B 3'UTR 0.07 TCGA-38-4632-01 7 44259817 44259817 G T CAMK2B Silent p.A615A 0.08 TCGA-38-4632-01 7 47937647 47937647 T A PKD1L1 Nonsense_Mutation p.R737* 0.08 TCGA-38-4632-01 7 53103526 53103526 C A POM121L12 Silent p.P54P 0.09 TCGA-38-4632-01 7 78150963 78150963 C A MAGI2 Splice_Site p.X180_splice 0.16 TCGA-38-4632-01 7 81374416 81374416 C A HGF Missense_Mutation p.G216W 0.45 deleterious(0) probably_damaging(0.999) TCGA-38-4632-01 7 82582364 82582364 T C PCLO Silent p.S2635S 0.13 TCGA-38-4632-01 7 87459223 87459223 C A RUNDC3B Missense_Mutation p.L434I 0.14 tolerated(0.2) benign(0.03) TCGA-38-4632-01 7 88966205 88966205 C A ZNF804B Silent p.A1303A 0.22 TCGA-38-4632-01 7 92098120 92098120 C T ERVW-1 Missense_Mutation p.A526T 0.26 deleterious_low_confidence(0) possibly_damaging(0.494) TCGA-38-4632-01 7 99031016 99031017 TC AAA ATP5J2-PTCD1 Frame_Shift_Ins p.E209Ffs*105 0.37 TCGA-38-4632-01 8 102586052 102586052 G T GRHL2 Missense_Mutation p.R297S 0.36 deleterious(0) possibly_damaging(0.597) TCGA-38-4632-01 8 10387192 10387192 A G PRSS55 Silent p.L110L 0.28 TCGA-38-4632-01 8 10466378 10466378 C A RP1L1 Nonsense_Mutation p.E1744* 0.23 TCGA-38-4632-01 8 10469396 10469396 C A RP1L1 Missense_Mutation p.A738S 0.32 possibly_damaging(0.813) TCGA-38-4632-01 8 104778725 104778725 G T RIMS2 Missense_Mutation p.G220C 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.754) TCGA-38-4632-01 8 104897822 104897822 G T RIMS2 Missense_Mutation p.R332L 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-38-4632-01 8 104898100 104898100 G A RIMS2 Missense_Mutation p.A425T 0.24 tolerated_low_confidence(0.47) benign(0.082) TCGA-38-4632-01 8 105261776 105261776 C G RIMS2 Silent p.A1217A 0.09 TCGA-38-4632-01 8 105360857 105360857 G A DCSTAMP Nonsense_Mutation p.W26* 0.19 TCGA-38-4632-01 8 105360858 105360858 G T DCSTAMP Missense_Mutation p.W26C 0.19 deleterious(0) probably_damaging(0.94) TCGA-38-4632-01 8 10584169 10584169 C T SOX7 Silent p.S134S 0.12 TCGA-38-4632-01 8 106813908 106813908 G C ZFPM2 Missense_Mutation p.S533T 0.19 tolerated(0.38) benign(0.156) TCGA-38-4632-01 8 10756197 10756197 C A XKR6 Missense_Mutation p.M397I 0.21 deleterious(0) probably_damaging(0.993) TCGA-38-4632-01 8 113649205 113649205 C A CSMD3 Missense_Mutation p.G1186C 0.12 deleterious(0.01) probably_damaging(1) TCGA-38-4632-01 8 113678590 113678590 C A CSMD3 Missense_Mutation p.W911L 0.24 deleterious(0) probably_damaging(1) TCGA-38-4632-01 8 113812445 113812445 G T CSMD3 Missense_Mutation p.H640N 0.27 tolerated(0.27) probably_damaging(0.95) TCGA-38-4632-01 8 116426738 116426738 G C TRPS1 Missense_Mutation p.S1133C 0.09 deleterious_low_confidence(0) probably_damaging(0.922) TCGA-38-4632-01 8 118159363 118159363 G T SLC30A8 Missense_Mutation p.C81F 0.29 deleterious(0) probably_damaging(1) TCGA-38-4632-01 8 118540906 118540906 C G MED30 Missense_Mutation p.T65S 0.33 tolerated(0.31) benign(0.01) TCGA-38-4632-01 8 125072897 125072897 C T FER1L6 Nonsense_Mutation p.Q1032* 0.09 TCGA-38-4632-01 8 139165270 139165270 C A FAM135B Missense_Mutation p.G483V 0.31 tolerated(0.13) benign(0.016) TCGA-38-4632-01 8 139635992 139635992 C G COL22A1 Missense_Mutation p.G1252R 0.29 unknown(0) TCGA-38-4632-01 8 143927822 143927822 C T GML Missense_Mutation p.R65C 0.29 deleterious(0) probably_damaging(0.998) TCGA-38-4632-01 8 143994258 143994258 C A CYP11B2 Missense_Mutation p.D389Y 0.24 deleterious(0) probably_damaging(0.987) TCGA-38-4632-01 8 144522481 144522481 G A ZC3H3 Missense_Mutation p.L849F 0.15 deleterious_low_confidence(0.02) benign(0.163) TCGA-38-4632-01 8 145641555 145641555 G A SLC39A4 Intron 0.52 TCGA-38-4632-01 8 16948092 16948092 G T MICU3 Missense_Mutation p.S296I 0.16 tolerated(0.06) benign(0.115) TCGA-38-4632-01 8 20003354 20003354 G T SLC18A1 Silent p.R500R 0.17 TCGA-38-4632-01 8 22210612 22210612 G T PIWIL2 Silent p.V848V 0.29 TCGA-38-4632-01 8 26627597 26627597 C A ADRA1A Intron 0.35 TCGA-38-4632-01 8 2949081 2949081 A T CSMD1 Silent p.T2414T 0.21 TCGA-38-4632-01 8 30701975 30701975 T - TEX15 Frame_Shift_Del p.N1520Ifs*9 0.19 TCGA-38-4632-01 8 39645695 39645695 T C ADAM2 Missense_Mutation p.T240A 0.29 tolerated(0.17) benign(0.058) TCGA-38-4632-01 8 40532226 40532226 T A ZMAT4 Nonsense_Mutation p.R192* 0.27 TCGA-38-4632-01 8 51449349 51449349 C A SNTG1 Missense_Mutation p.P221T 0.13 tolerated(0.5) benign(0.003) TCGA-38-4632-01 8 56436157 56436157 A T XKR4 Missense_Mutation p.I442F 0.40 deleterious(0) probably_damaging(0.995) TCGA-38-4632-01 8 59347001 59347001 T A UBXN2B Missense_Mutation p.D157E 0.08 tolerated(0.09) probably_damaging(0.999) TCGA-38-4632-01 8 59410881 59410881 G A CYP7A1 Silent p.V76V 0.05 TCGA-38-4632-01 8 63976792 63976792 T C TTPA Silent p.P212P 0.15 TCGA-38-4632-01 8 68956759 68956759 C A PREX2 Silent p.R293R 0.09 TCGA-38-4632-01 8 70585498 70585498 T A SLCO5A1 Missense_Mutation p.Q718L 0.20 deleterious(0.02) benign(0.063) TCGA-38-4632-01 8 70964509 70964509 G A PRDM14 Missense_Mutation p.H507Y 0.06 deleterious(0.02) benign(0.047) TCGA-38-4632-01 8 7717882 7717882 C G SPAG11A Intron 0.57 TCGA-38-4632-01 8 77764453 77764453 G A ZFHX4 Missense_Mutation p.G1766S 0.10 probably_damaging(0.931) TCGA-38-4632-01 8 77768373 77768373 C A ZFHX4 Missense_Mutation p.D3072E 0.12 possibly_damaging(0.839) TCGA-38-4632-01 8 77776592 77776592 C A ZFHX4 Missense_Mutation p.L3548I 0.09 possibly_damaging(0.848) TCGA-38-4632-01 8 77776730 77776730 G T ZFHX4 Missense_Mutation p.V3594L 0.15 probably_damaging(0.961) TCGA-38-4632-01 8 85799925 85799925 C A RALYL Missense_Mutation p.P271T 0.28 tolerated(0.15) benign(0.217) TCGA-38-4632-01 8 85799926 85799926 C G RALYL Missense_Mutation p.P271R 0.27 tolerated(0.18) benign(0.297) TCGA-38-4632-01 8 88249304 88249304 A G CNBD1 Silent p.T245T 0.14 TCGA-38-4632-01 8 88885437 88885437 A T DCAF4L2 Missense_Mutation p.C255S 0.11 tolerated(0.89) benign(0.002) TCGA-38-4632-01 8 97243177 97243177 C A UQCRB 3'UTR 0.41 TCGA-38-4632-01 8 99264812 99264812 G A NIPAL2 Silent p.F85F 0.05 TCGA-38-4632-01 9 103261150 103261150 A G TMEFF1 Silent p.Q100Q 0.41 TCGA-38-4632-01 9 104124972 104124972 T C BAAT Missense_Mutation p.N332S 0.09 tolerated(0.16) possibly_damaging(0.457) TCGA-38-4632-01 9 113168525 113168525 G A SVEP1 Missense_Mutation p.P3119S 0.34 benign(0.434) TCGA-38-4632-01 9 113261339 113261339 G A SVEP1 Nonsense_Mutation p.Q555* 0.15 TCGA-38-4632-01 9 117172 117172 C A FOXD4 Silent p.A316A 0.21 TCGA-38-4632-01 9 120475965 120475965 C A TLR4 Missense_Mutation p.S520Y 0.31 tolerated(1) benign(0.003) TCGA-38-4632-01 9 128678003 128678003 G T PBX3 Missense_Mutation p.D105Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-38-4632-01 9 136321309 136321309 C T ADAMTS13 Silent p.V1229V 0.17 TCGA-38-4632-01 9 139250962 139250962 A G GPSM1 Missense_Mutation p.E594G 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-38-4632-01 9 140611370 140611370 C G EHMT1 Missense_Mutation p.I126M 0.17 deleterious_low_confidence(0.01) benign(0.248) TCGA-38-4632-01 9 18941835 18941835 C A FAM154A Missense_Mutation p.R74I 0.23 deleterious(0) probably_damaging(0.962) TCGA-38-4632-01 9 21227612 21227612 C A IFNA17 Missense_Mutation p.R187S 0.21 tolerated(0.78) benign(0.004) TCGA-38-4632-01 9 32973624 32973624 C G APTX Missense_Mutation p.G301R 0.13 deleterious(0) probably_damaging(0.999) TCGA-38-4632-01 9 34126444 34126444 C T DCAF12 5'UTR 0.26 TCGA-38-4632-01 9 35689925 35689925 G T TPM2 5'UTR 0.41 TCGA-38-4632-01 9 43625036 43625036 C A SPATA31A6 Missense_Mutation p.M1217I 0.25 tolerated(0.34) benign(0.013) TCGA-38-4632-01 9 6814718 6814718 A T KDM4C Silent p.A136A 0.10 TCGA-38-4632-01 9 84564680 84564680 C A RP11-383M4.6 Intron 0.15 TCGA-38-4632-01 9 84607070 84607070 C G SPATA31D1 Missense_Mutation p.P562R 0.10 deleterious(0.02) probably_damaging(0.979) TCGA-38-4632-01 9 8528593 8528593 G T PTPRD Nonsense_Mutation p.S180* 0.11 TCGA-38-4632-01 9 8528594 8528594 A T PTPRD Missense_Mutation p.S180T 0.11 tolerated(0.23) probably_damaging(0.955) TCGA-38-4632-01 9 91616365 91616365 T C S1PR3 Missense_Mutation p.C84R 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-38-4632-01 X 101139127 101139127 T G ZMAT1 Silent p.T424T 0.42 TCGA-38-4632-01 X 107930773 107930773 T A COL4A5 Silent p.P1459P 0.32 TCGA-38-4632-01 X 112054522 112054522 C A AMOT Nonsense_Mutation p.E498* 0.46 TCGA-38-4632-01 X 114540964 114540964 G T LUZP4 Missense_Mutation p.Q179H 0.42 tolerated(0.15) benign(0.003) TCGA-38-4632-01 X 12736249 12736249 G A FRMPD4 Missense_Mutation p.A1102T 0.30 deleterious_low_confidence(0.03) benign(0.005) TCGA-38-4632-01 X 132351100 132351100 G A TFDP3 Silent p.D396D 0.16 TCGA-38-4632-01 X 135303096 135303096 T A MAP7D3 Missense_Mutation p.T772S 0.52 tolerated(0.31) benign(0.003) TCGA-38-4632-01 X 135429849 135429849 G A GPR112 Silent p.L1328L 0.64 TCGA-38-4632-01 X 13825814 13825814 G A GPM6B Missense_Mutation p.P46S 0.10 tolerated_low_confidence(0.17) benign(0.224) TCGA-38-4632-01 X 138827926 138827926 C - ATP11C Frame_Shift_Del p.T977Lfs*10 0.26 TCGA-38-4632-01 X 140994298 140994298 C A MAGEC1 Missense_Mutation p.Q370K 0.28 deleterious_low_confidence(0) benign(0.042) TCGA-38-4632-01 X 142113811 142113811 C A SPANXN4 Missense_Mutation p.P4Q 0.29 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-38-4632-01 X 147743642 147743642 C A AFF2 Missense_Mutation p.P132T 0.27 tolerated(0.43) benign(0.089) TCGA-38-4632-01 X 151302988 151302988 C A MAGEA10 Nonsense_Mutation p.E369* 0.23 TCGA-38-4632-01 X 152814197 152814197 C T ATP2B3 Missense_Mutation p.P408L 0.56 deleterious(0.04) benign(0.168) TCGA-38-4632-01 X 154299836 154299836 G T BRCC3 Missense_Mutation p.V12F 0.80 deleterious(0) unknown(0) TCGA-38-4632-01 X 27765055 27765055 G A DCAF8L2 Missense_Mutation p.G15R 0.63 tolerated_low_confidence(0.52) benign(0.008) TCGA-38-4632-01 X 29938104 29938104 T A IL1RAPL1 Missense_Mutation p.I317N 0.24 deleterious(0.03) probably_damaging(0.929) TCGA-38-4632-01 X 2998960 2998960 C A ARSF Silent p.V104V 0.54 TCGA-38-4632-01 X 30577751 30577751 G T CXorf21 Missense_Mutation p.A241E 0.38 deleterious(0) probably_damaging(0.915) TCGA-38-4632-01 X 32430021 32430021 T A DMD Missense_Mutation p.R1361W 0.42 probably_damaging(0.961) TCGA-38-4632-01 X 34961437 34961437 G T FAM47B Missense_Mutation p.W163C 0.48 tolerated(0.12) benign(0.004) TCGA-38-4632-01 X 47775135 47775135 G T ZNF81 Missense_Mutation p.G364W 0.30 deleterious(0) probably_damaging(0.993) TCGA-38-4632-01 X 55117812 55117812 G T PAGE2 Nonsense_Mutation p.E81* 0.58 TCGA-38-4632-01 X 5827164 5827164 C A NLGN4X Missense_Mutation p.V248L 0.50 deleterious(0.01) possibly_damaging(0.887) TCGA-38-4632-01 X 64719040 64719040 C T ZC3H12B Missense_Mutation p.L304F 0.54 deleterious(0) probably_damaging(1) TCGA-38-4632-01 X 65413396 65413396 T A HEPH Missense_Mutation p.W483R 0.57 tolerated(0.5) probably_damaging(0.993) TCGA-38-4632-01 X 70148047 70148047 T G SLC7A3 Silent p.G256G 0.26 TCGA-38-4632-01 Y 6736316 6736316 G T AMELY Missense_Mutation p.P112Q 0.48 tolerated(0.06) probably_damaging(1) TCGA-38-6178-01 10 35495854 35495854 C T CREM Silent p.I210I 0.05 TCGA-38-6178-01 11 108010912 108010912 G T ACAT1 Nonsense_Mutation p.E234* 0.05 TCGA-38-6178-01 11 123508984 123508984 A G SCN3B Missense_Mutation p.L165P 0.05 deleterious(0.04) probably_damaging(0.945) TCGA-38-6178-01 11 65375118 65375118 C G MAP3K11 Missense_Mutation p.K413N 0.44 deleterious(0) probably_damaging(0.981) TCGA-38-6178-01 11 8942930 8942930 C T C11orf16 Missense_Mutation p.G446E 0.06 tolerated_low_confidence(1) benign(0) TCGA-38-6178-01 12 121881874 121881874 C T KDM2B Missense_Mutation p.V798M 0.28 tolerated(0.09) possibly_damaging(0.563) TCGA-38-6178-01 12 44180500 44180500 A G IRAK4 Silent p.Q455Q 0.04 TCGA-38-6178-01 12 5685180 5685180 G C ANO2 Missense_Mutation p.A814G 0.22 deleterious(0) probably_damaging(0.998) TCGA-38-6178-01 12 60168962 60168962 G - SLC16A7 Frame_Shift_Del p.A296Lfs*5 0.08 TCGA-38-6178-01 14 24108557 24108557 G T DHRS2 Missense_Mutation p.V104L 0.14 tolerated(0.08) benign(0.196) TCGA-38-6178-01 14 34398322 34398322 G A EGLN3 Missense_Mutation p.R192C 0.08 deleterious(0) possibly_damaging(0.535) TCGA-38-6178-01 14 93393922 93393922 A T CHGA Missense_Mutation p.H72L 0.03 deleterious(0) possibly_damaging(0.8) TCGA-38-6178-01 16 31234266 31234266 G C TRIM72 Missense_Mutation p.A287P 0.05 deleterious(0.01) benign(0.077) TCGA-38-6178-01 17 10248922 10248922 C T MYH13 Silent p.S425S 0.07 TCGA-38-6178-01 17 18834028 18834028 A C PRPSAP2 3'UTR 0.16 TCGA-38-6178-01 17 36958457 36958457 C T CWC25 Missense_Mutation p.R389H 0.08 tolerated(0.18) benign(0.001) TCGA-38-6178-01 17 7577090 7577090 C G TP53 Missense_Mutation p.R283P 0.42 deleterious(0.01) probably_damaging(0.978) TCGA-38-6178-01 18 12699187 12699187 G T CEP76 Missense_Mutation p.T104K 0.08 tolerated(0.23) benign(0.075) TCGA-38-6178-01 18 19153993 19153993 T A ESCO1 Missense_Mutation p.N271I 0.07 deleterious(0.03) benign(0.01) TCGA-38-6178-01 18 21399897 21399897 G C LAMA3 Missense_Mutation p.G747A 0.11 probably_damaging(0.999) TCGA-38-6178-01 18 21399920 21399920 G A LAMA3 Missense_Mutation p.E755K 0.13 benign(0.004) TCGA-38-6178-01 18 21402219 21402219 G A LAMA3 Missense_Mutation p.D770N 0.12 benign(0.098) TCGA-38-6178-01 18 21402226 21402226 G A LAMA3 Missense_Mutation p.R772K 0.11 benign(0.005) TCGA-38-6178-01 18 21402295 21402295 G A LAMA3 Missense_Mutation p.G795E 0.09 benign(0.053) TCGA-38-6178-01 18 21404467 21404467 G A LAMA3 Missense_Mutation p.D837N 0.14 benign(0.341) TCGA-38-6178-01 19 46202151 46202151 G A QPCTL Silent p.R293R 0.06 TCGA-38-6178-01 19 54722715 54722715 A T LILRB3 Intron 0.30 TCGA-38-6178-01 19 57328566 57328566 G C PEG3 Missense_Mutation p.P415R 0.15 deleterious(0) probably_damaging(1) TCGA-38-6178-01 19 58048682 58048682 C T ZNF549 Missense_Mutation p.H104Y 0.43 tolerated(0.12) benign(0.014) TCGA-38-6178-01 1 108185292 108185292 G C VAV3 Silent p.A621A 0.38 TCGA-38-6178-01 1 109635561 109635561 C G TMEM167B Silent p.T20T 0.19 TCGA-38-6178-01 1 118584635 118584635 C T SPAG17 Missense_Mutation p.E949K 0.06 tolerated(0.07) possibly_damaging(0.641) TCGA-38-6178-01 1 152084547 152084547 C T TCHH Silent p.Q382Q 0.25 TCGA-38-6178-01 1 165370602 165370602 G T RXRG Silent p.G430G 0.04 TCGA-38-6178-01 1 17405776 17405776 G A PADI2 Silent p.I431I 0.06 TCGA-38-6178-01 1 186322931 186322931 T G TPR Silent p.S741S 0.06 TCGA-38-6178-01 1 200377927 200377927 G T ZNF281 Missense_Mutation p.L303I 0.04 deleterious(0.01) probably_damaging(0.99) TCGA-38-6178-01 1 205739407 205739407 C A RAB7L1 3'UTR 0.16 TCGA-38-6178-01 1 214815962 214815962 G A CENPF Silent p.Q1427Q 0.09 TCGA-38-6178-01 1 22148734 22148734 C T LDLRAD2 3'UTR 0.42 TCGA-38-6178-01 1 247615003 247615003 C A OR2B11 Missense_Mutation p.K94N 0.06 deleterious(0.01) probably_damaging(0.991) TCGA-38-6178-01 1 248551128 248551128 C A OR2T6 Nonsense_Mutation p.Y73* 0.20 TCGA-38-6178-01 1 36937240 36937240 G A CSF3R Missense_Mutation p.P360L 0.06 tolerated(0.2) benign(0.019) TCGA-38-6178-01 1 37271784 37271784 G A GRIK3 Silent p.Y745Y 0.11 TCGA-38-6178-01 1 37324731 37324731 C T GRIK3 Missense_Mutation p.R361H 0.23 deleterious(0.02) possibly_damaging(0.687) TCGA-38-6178-01 1 43775179 43775179 C T TIE1 Missense_Mutation p.R437W 0.19 deleterious(0) possibly_damaging(0.888) TCGA-38-6178-01 1 55604671 55604671 A T USP24 Silent p.L921L 0.28 TCGA-38-6178-01 20 33345399 33345399 T C NCOA6 Silent p.S384S 0.09 TCGA-38-6178-01 20 36768038 36768038 G C TGM2 Missense_Mutation p.P373R 0.10 deleterious(0) probably_damaging(1) TCGA-38-6178-01 20 60770918 60770918 G T MTG2 Missense_Mutation p.A89S 0.37 tolerated(0.36) benign(0.1) TCGA-38-6178-01 20 62701744 62701744 C T TCEA2 Nonsense_Mutation p.Q217* 0.07 TCGA-38-6178-01 22 26423044 26423044 G T MYO18B Silent p.P2368P 0.11 TCGA-38-6178-01 2 110904346 110904346 C A NPHP1 Missense_Mutation p.V502F 0.07 tolerated(0.09) possibly_damaging(0.568) TCGA-38-6178-01 2 124783277 124783277 G T CNTNAP5 Missense_Mutation p.G17V 0.09 tolerated(0.22) benign(0.008) TCGA-38-6178-01 2 1499824 1499824 C A TPO Silent p.S690S 0.19 TCGA-38-6178-01 2 172691271 172691271 T C SLC25A12 Silent p.L239L 0.04 TCGA-38-6178-01 2 179532416 179532416 C T TTN Missense_Mutation p.E11860K 0.04 TCGA-38-6178-01 2 179577963 179577963 G T TTN Silent p.I8966I 0.09 TCGA-38-6178-01 2 18113204 18113208 TTCGG - KCNS3 Frame_Shift_Del p.R311Sfs*11 0.26 TCGA-38-6178-01 2 238285691 238285691 C A COL6A3 Missense_Mutation p.A932S 0.15 benign(0.31) TCGA-38-6178-01 2 39025509 39025509 C G DHX57 Missense_Mutation p.D1365H 0.04 deleterious(0.01) probably_damaging(1) TCGA-38-6178-01 2 98354270 98354270 C A ZAP70 Silent p.I511I 0.13 TCGA-38-6178-01 3 180349366 180349366 T C CCDC39 Missense_Mutation p.E630G 0.63 deleterious(0) possibly_damaging(0.735) TCGA-38-6178-01 3 89390135 89390135 C A EPHA3 Missense_Mutation p.S295Y 0.04 tolerated(1) benign(0.013) TCGA-38-6178-01 4 108831634 108831634 T G SGMS2 Silent p.P341P 0.15 TCGA-38-6178-01 4 162307279 162307279 T C FSTL5 Missense_Mutation p.T722A 0.27 deleterious(0.01) benign(0.018) TCGA-38-6178-01 4 162307290 162307290 A T FSTL5 Missense_Mutation p.V718D 0.27 deleterious(0) possibly_damaging(0.48) TCGA-38-6178-01 4 176733292 176733292 A G GPM6A Intron 0.26 TCGA-38-6178-01 4 187519168 187519168 C A FAT1 Missense_Mutation p.G4072V 0.15 benign(0.273) TCGA-38-6178-01 4 37847254 37847254 A T PGM2 Missense_Mutation p.T304S 0.06 tolerated(0.21) benign(0.016) TCGA-38-6178-01 4 46966989 46966989 G T GABRA4 Missense_Mutation p.Q378K 0.15 tolerated(0.14) benign(0.314) TCGA-38-6178-01 4 47559751 47559751 G A ATP10D Nonsense_Mutation p.W632* 0.26 TCGA-38-6178-01 4 69433758 69433758 G A UGT2B17 Missense_Mutation p.L149F 0.12 deleterious(0.03) benign(0.032) TCGA-38-6178-01 4 85605244 85605244 T C WDFY3 Missense_Mutation p.H3193R 0.33 deleterious(0.01) benign(0.04) TCGA-38-6178-01 4 87696609 87696609 G T PTPN13 Nonsense_Mutation p.G1904* 0.15 TCGA-38-6178-01 5 141049581 141049581 T C ARAP3 Silent p.A719A 0.16 TCGA-38-6178-01 5 175819715 175819715 A C CLTB 3'UTR 0.06 TCGA-38-6178-01 5 36671141 36671141 G A SLC1A3 Silent p.A110A 0.09 TCGA-38-6178-01 5 68558042 68558042 G A CDK7 Missense_Mutation p.A180T 0.07 deleterious(0.02) benign(0.202) TCGA-38-6178-01 6 145124171 145124171 G T UTRN Splice_Site p.X3082_splice 0.50 TCGA-38-6178-01 6 28227351 28227351 C T NKAPL Missense_Mutation p.R68C 0.07 tolerated(0.12) unknown(0) TCGA-38-6178-01 6 76623792 76623792 C T MYO6 Missense_Mutation p.P1151L 0.22 tolerated(0.12) benign(0.234) TCGA-38-6178-01 6 8419843 8419843 C T SLC35B3 Missense_Mutation p.M250I 0.06 deleterious(0.03) probably_damaging(0.911) TCGA-38-6178-01 7 37953843 37953843 T A SFRP4 Silent p.A188A 0.06 TCGA-38-6178-01 7 43360276 43360276 G A HECW1 Missense_Mutation p.G132E 0.13 deleterious(0) probably_damaging(1) TCGA-38-6178-01 7 43360301 43360301 G A HECW1 Silent p.Q140Q 0.15 TCGA-38-6178-01 7 55242465 55242479 GGAATTAAGAGAAGC - EGFR In_Frame_Del p.E746_A750del 0.55 TCGA-38-6178-01 7 87011405 87011405 C T CROT Nonsense_Mutation p.R388* 0.18 TCGA-38-6178-01 8 3224649 3224649 G A CSMD1 Missense_Mutation p.T1007M 0.17 possibly_damaging(0.873) TCGA-38-6178-01 8 48689545 48689545 C G PRKDC Splice_Site p.X4014_splice 0.30 TCGA-38-6178-01 9 130588861 130588861 C G ENG Missense_Mutation p.A151P 0.08 tolerated(0.16) possibly_damaging(0.514) TCGA-38-6178-01 9 79955320 79955320 G T VPS13A Missense_Mutation p.V2294F 0.10 deleterious(0) probably_damaging(1) TCGA-38-6178-01 X 105010969 105010969 A T IL1RAPL2 Missense_Mutation p.D459V 0.11 deleterious(0.01) probably_damaging(1) TCGA-38-6178-01 X 23933856 23933856 C G CXorf58 Missense_Mutation p.P86A 0.05 deleterious(0) probably_damaging(1) TCGA-38-7271-01 10 13779848 13779848 C T FRMD4A Missense_Mutation p.R252K 0.08 tolerated(0.14) probably_damaging(0.995) TCGA-38-7271-01 10 55996638 55996638 G T PCDH15 Missense_Mutation p.D310E 0.07 deleterious(0) possibly_damaging(0.493) TCGA-38-7271-01 10 61815535 61815535 C G ANK3 Missense_Mutation p.E4316Q 0.04 benign(0.068) TCGA-38-7271-01 10 7423801 7423801 C A SFMBT2 Missense_Mutation p.K20N 0.08 tolerated_low_confidence(0.06) benign(0.347) TCGA-38-7271-01 11 10327981 10327981 G T ADM Silent p.V117V 0.11 TCGA-38-7271-01 11 117152669 117152669 C T RNF214 Silent p.F465F 0.03 TCGA-38-7271-01 11 28119517 28119517 C G KIF18A 5'UTR 0.06 TCGA-38-7271-01 11 45671711 45671711 G T CHST1 Silent p.R255R 0.08 TCGA-38-7271-01 11 58979778 58979778 C A MPEG1 Silent p.T187T 0.10 TCGA-38-7271-01 11 68514699 68514699 G C MTL5 Missense_Mutation p.L203V 0.06 tolerated(0.33) benign(0.002) TCGA-38-7271-01 11 770826 770826 C T PDDC1 3'UTR 0.06 TCGA-38-7271-01 12 108641878 108641878 G T WSCD2 Missense_Mutation p.D486Y 0.05 deleterious(0.01) probably_damaging(0.956) TCGA-38-7271-01 12 56558473 56558473 A G SMARCC2 Missense_Mutation p.M1061T 0.16 tolerated(0.17) unknown(0) TCGA-38-7271-01 12 9000230 9000230 C T A2ML1 Missense_Mutation p.A590V 0.04 deleterious(0) probably_damaging(0.977) TCGA-38-7271-01 14 101521027 101521027 G A MIR134 RNA 0.07 TCGA-38-7271-01 14 105405048 105405048 G A AHNAK2 Silent p.S5580S 0.12 TCGA-38-7271-01 14 105847427 105847427 C A PACS2 Missense_Mutation p.P420H 0.20 deleterious(0.03) benign(0.011) TCGA-38-7271-01 14 20824565 20824565 G C PARP2 Missense_Mutation p.E414Q 0.04 tolerated(0.09) benign(0.066) TCGA-38-7271-01 14 21833093 21833093 C A SUPT16H Missense_Mutation p.V376F 0.12 deleterious(0) probably_damaging(0.993) TCGA-38-7271-01 14 21833094 21833094 C A SUPT16H Missense_Mutation p.M375I 0.12 deleterious(0.02) benign(0.35) TCGA-38-7271-01 14 23899833 23899833 A T MYH7 Missense_Mutation p.F312Y 0.12 tolerated(0.2) benign(0.062) TCGA-38-7271-01 14 38723755 38723755 C A CLEC14A Nonstop_Mutation p.*491Yext*45 0.10 TCGA-38-7271-01 14 69256498 69256498 C A ZFP36L1 Nonsense_Mutation p.E257* 0.07 TCGA-38-7271-01 15 63946372 63946372 C A HERC1 Missense_Mutation p.M3412I 0.10 benign(0) TCGA-38-7271-01 15 73879894 73879894 G A NPTN Missense_Mutation p.P226L 0.06 deleterious(0.02) benign(0.31) TCGA-38-7271-01 16 67912493 67912493 G C EDC4 Missense_Mutation p.K381N 0.04 deleterious(0) probably_damaging(0.997) TCGA-38-7271-01 17 12655842 12655842 C A MYOCD Missense_Mutation p.P413T 0.09 tolerated(0.06) possibly_damaging(0.856) TCGA-38-7271-01 17 1378132 1378132 C A MYO1C Missense_Mutation p.D564Y 0.13 deleterious(0) possibly_damaging(0.724) TCGA-38-7271-01 17 19235181 19235181 C G EPN2 Missense_Mutation p.S476C 0.04 tolerated(0.05) possibly_damaging(0.572) TCGA-38-7271-01 17 34192362 34192362 C T C17orf66 Nonsense_Mutation p.W59* 0.08 TCGA-38-7271-01 17 40843218 40843218 C G CNTNAP1 Missense_Mutation p.S708C 0.04 deleterious(0) probably_damaging(0.922) TCGA-38-7271-01 17 61869830 61869830 G C DDX42 Missense_Mutation p.E94Q 0.04 tolerated(0.15) possibly_damaging(0.715) TCGA-38-7271-01 17 73813472 73813472 C T UNK Silent p.I390I 0.07 TCGA-38-7271-01 19 11728364 11728364 C T ZNF627 Missense_Mutation p.S349L 0.09 tolerated(0.11) benign(0.412) TCGA-38-7271-01 19 12127013 12127013 C T ZNF433 Silent p.E223E 0.09 TCGA-38-7271-01 19 35232973 35232973 G C ZNF181 Missense_Mutation p.E563Q 0.05 tolerated(0.21) possibly_damaging(0.583) TCGA-38-7271-01 19 37880228 37880228 G C ZNF527 Missense_Mutation p.R426P 0.16 tolerated(0.19) probably_damaging(0.976) TCGA-38-7271-01 19 39322385 39322385 T A ECH1 Nonsense_Mutation p.R10* 0.12 TCGA-38-7271-01 19 42814725 42814725 G A PRR19 Missense_Mutation p.G302R 0.04 deleterious_low_confidence(0.04) possibly_damaging(0.565) TCGA-38-7271-01 19 44352229 44352229 C T ZNF283 Silent p.C492C 0.06 TCGA-38-7271-01 19 45883343 45883343 C A PPP1R13L 3'UTR 0.11 TCGA-38-7271-01 19 53321220 53321220 C A ZNF28 5'UTR 0.07 TCGA-38-7271-01 19 55450792 55450792 G A NLRP7 Silent p.S465S 0.12 TCGA-38-7271-01 19 58596482 58596482 C - ZSCAN18 Frame_Shift_Del p.G424Efs*61 0.31 TCGA-38-7271-01 19 7992608 7992608 G A TIMM44 Silent p.I391I 0.05 TCGA-38-7271-01 19 9048429 9048429 C G MUC16 Missense_Mutation p.E11068Q 0.07 benign(0.016) TCGA-38-7271-01 1 109740164 109740164 C T KIAA1324 Silent p.F730F 0.07 TCGA-38-7271-01 1 114505025 114505025 C G HIPK1 Missense_Mutation p.Q690E 0.05 deleterious(0) probably_damaging(0.926) TCGA-38-7271-01 1 144923778 144923778 T C PDE4DIP Missense_Mutation p.H227R 0.04 tolerated(0.28) benign(0.062) TCGA-38-7271-01 1 155289624 155289624 G C FDPS Missense_Mutation p.G322R 0.04 deleterious(0.02) probably_damaging(0.947) TCGA-38-7271-01 1 155638451 155638451 G A YY1AP1 Silent p.L420L 0.05 TCGA-38-7271-01 1 157667192 157667192 C A FCRL3 Silent p.L194L 0.08 TCGA-38-7271-01 1 16073511 16073511 G A TMEM82 Missense_Mutation p.V303M 0.07 tolerated(0.07) benign(0.157) TCGA-38-7271-01 1 169511400 169511400 C G F5 Missense_Mutation p.Q976H 0.04 deleterious(0.02) probably_damaging(0.937) TCGA-38-7271-01 1 181701970 181701970 G C CACNA1E Missense_Mutation p.Q916H 0.06 tolerated(0.25) benign(0.216) TCGA-38-7271-01 1 201052309 201052309 G A CACNA1S Silent p.L458L 0.07 TCGA-38-7271-01 1 209800834 209800834 G A LAMB3 Missense_Mutation p.P460L 0.18 tolerated(0.29) benign(0.026) TCGA-38-7271-01 1 236205429 236205429 C A NID1 Nonsense_Mutation p.E306* 0.06 TCGA-38-7271-01 1 237656322 237656322 C A RYR2 Silent p.I632I 0.33 TCGA-38-7271-01 1 237758927 237758927 C A RYR2 Silent p.A1522A 0.06 TCGA-38-7271-01 1 247875507 247875507 C A OR6F1 Missense_Mutation p.W184L 0.05 tolerated(1) benign(0.03) TCGA-38-7271-01 1 9307143 9307143 G T H6PD Splice_Site p.X249_splice 0.05 TCGA-38-7271-01 1 95357836 95357836 G T SLC44A3 Splice_Site p.X541_splice 0.05 TCGA-38-7271-01 20 45801474 45801474 G T EYA2 Missense_Mutation p.R386L 0.11 deleterious(0) probably_damaging(0.996) TCGA-38-7271-01 21 19704408 19704408 C A TMPRSS15 Silent p.L549L 0.10 TCGA-38-7271-01 21 28338228 28338228 C A ADAMTS5 Silent p.A161A 0.11 TCGA-38-7271-01 21 31869328 31869328 C G KRTAP19-4 Missense_Mutation p.R34T 0.05 deleterious_low_confidence(0.03) unknown(0) TCGA-38-7271-01 2 141215176 141215176 C A LRP1B Nonsense_Mutation p.E3224* 0.05 TCGA-38-7271-01 2 179641214 179641214 T C TTN Missense_Mutation p.I1793V 0.11 TCGA-38-7271-01 2 219499329 219499329 C G PLCD4 Missense_Mutation p.F624L 0.06 tolerated(0.67) benign(0.002) TCGA-38-7271-01 2 240036977 240036977 C T HDAC4 Silent p.R516R 0.09 TCGA-38-7271-01 2 30863132 30863132 G T LCLAT1 Nonsense_Mutation p.E298* 0.09 TCGA-38-7271-01 2 32836581 32836581 G T BIRC6 Missense_Mutation p.D4776Y 0.10 probably_damaging(0.995) TCGA-38-7271-01 2 74752246 74752246 T C DQX1 Silent p.A107A 0.12 TCGA-38-7271-01 3 138188931 138188931 G A ESYT3 Nonsense_Mutation p.W511* 0.09 TCGA-38-7271-01 3 160231870 160231870 C T KPNA4 Missense_Mutation p.D378N 0.14 tolerated(0.48) benign(0.005) TCGA-38-7271-01 3 184046426 184046426 G A EIF4G1 Missense_Mutation p.E1328K 0.05 deleterious(0.01) possibly_damaging(0.754) TCGA-38-7271-01 3 49094711 49094711 T A QRICH1 Missense_Mutation p.T308S 0.10 tolerated(0.23) benign(0.064) TCGA-38-7271-01 3 63645444 63645444 T A SNTN Silent p.T63T 0.10 TCGA-38-7271-01 4 153249469 153249469 C A FBXW7 Nonsense_Mutation p.G437* 0.09 TCGA-38-7271-01 5 37020711 37020711 G T NIPBL Nonsense_Mutation p.E1721* 0.06 TCGA-38-7271-01 5 37479982 37479982 C G WDR70 Missense_Mutation p.L245V 0.04 deleterious(0) probably_damaging(0.927) TCGA-38-7271-01 5 58146996 58146996 G C RAB3C Missense_Mutation p.E168Q 0.05 tolerated(0.25) benign(0.001) TCGA-38-7271-01 5 75427582 75427582 G T SV2C Missense_Mutation p.D3Y 0.07 deleterious_low_confidence(0) possibly_damaging(0.526) TCGA-38-7271-01 5 82833291 82833291 C A VCAN Nonsense_Mutation p.S1490* 0.12 TCGA-38-7271-01 5 90074814 90074814 G C GPR98 Missense_Mutation p.E4328Q 0.06 benign(0.002) TCGA-38-7271-01 6 42974779 42974779 G C PPP2R5D Missense_Mutation p.E151D 0.07 deleterious(0.03) benign(0.096) TCGA-38-7271-01 6 71190694 71190694 C A FAM135A Silent p.V211V 0.10 TCGA-38-7271-01 6 71567625 71567625 G T SMAP1 Missense_Mutation p.G321V 0.06 deleterious(0) probably_damaging(0.984) TCGA-38-7271-01 7 142499857 142499857 T C TRBC2 Missense_Mutation p.Y159H 0.07 deleterious(0) probably_damaging(1) TCGA-38-7271-01 7 28610044 28610044 G T CREB5 Missense_Mutation p.S118I 0.10 tolerated(0.18) benign(0.265) TCGA-38-7271-01 7 44575483 44575483 T A NPC1L1 Missense_Mutation p.I647F 0.08 deleterious(0) possibly_damaging(0.891) TCGA-38-7271-01 7 45719306 45719306 A C ADCY1 Splice_Site p.X633_splice 0.07 TCGA-38-7271-01 7 45719307 45719307 G A ADCY1 Splice_Site p.X633_splice 0.06 TCGA-38-7271-01 8 145638202 145638202 C T SLC39A4 Missense_Mutation p.E586K 0.11 tolerated(0.41) benign(0.038) TCGA-38-7271-01 8 33451072 33451072 G C DUSP26 Missense_Mutation p.R139G 0.10 tolerated(0.09) benign(0.406) TCGA-38-7271-01 8 97157676 97157676 C A GDF6 Silent p.L161L 0.17 TCGA-38-7271-01 9 103340492 103340492 G C MURC Missense_Mutation p.E23Q 0.07 deleterious(0.03) possibly_damaging(0.636) TCGA-38-7271-01 9 130912526 130912526 A T LCN2 Nonsense_Mutation p.K50* 0.08 TCGA-38-7271-01 9 131028097 131028097 G A GOLGA2 Missense_Mutation p.H239Y 0.08 tolerated(0.28) benign(0.132) TCGA-38-7271-01 9 43625405 43625405 C G SPATA31A6 Missense_Mutation p.K1094N 0.11 tolerated(0.06) benign(0.221) TCGA-38-7271-01 9 6620296 6620296 G C GLDC Missense_Mutation p.L120V 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-38-7271-01 X 107924145 107924145 C T COL4A5 Missense_Mutation p.S1349L 0.04 benign(0.19) TCGA-38-7271-01 X 111874629 111874629 T C LHFPL1 3'UTR 0.07 TCGA-38-7271-01 X 118968899 118968899 G T UPF3B Missense_Mutation p.A465E 0.06 deleterious(0.05) benign(0.011) TCGA-38-7271-01 X 119070590 119070590 C G NKAP Missense_Mutation p.A175P 0.09 deleterious(0.04) unknown(0) TCGA-38-7271-01 X 142596947 142596947 C G SPANXN3 Missense_Mutation p.L41F 0.12 tolerated(0.07) possibly_damaging(0.452) TCGA-38-7271-01 X 149639245 149639245 G T MAMLD1 Missense_Mutation p.G442V 0.09 deleterious(0) probably_damaging(0.984) TCGA-38-7271-01 X 151815583 151815583 C G GABRQ Missense_Mutation p.R161G 0.10 deleterious(0) probably_damaging(0.959) TCGA-38-7271-01 X 18275119 18275119 C G SCML2 Missense_Mutation p.Q435H 0.06 tolerated(0.12) benign(0.056) TCGA-38-7271-01 X 37670072 37670072 C A CYBB Missense_Mutation p.P539T 0.09 deleterious(0) probably_damaging(0.995) TCGA-38-7271-01 X 48687656 48687656 G T ERAS Missense_Mutation p.E41D 0.19 deleterious(0.01) benign(0.057) TCGA-38-7271-01 X 53459279 53459279 A C HSD17B10 Missense_Mutation p.C91W 0.09 deleterious(0) probably_damaging(1) TCGA-38-7271-01 X 54987318 54987318 C A PFKFB1 Missense_Mutation p.V86L 0.10 benign(0.008) TCGA-38-7271-01 X 55514884 55514884 C A USP51 Silent p.R163R 0.14 TCGA-38-7271-01 X 69645308 69645308 G T GDPD2 Splice_Site p.X70_splice 0.06 TCGA-38-7271-01 X 70467344 70467344 G T ZMYM3 Missense_Mutation p.A722E 0.09 tolerated(0.06) probably_damaging(0.933) TCGA-38-A44F-01 11 1718512 1718512 G A KRTAP5-6 Missense_Mutation p.G13S 0.08 unknown(0) TCGA-38-A44F-01 11 62417108 62417108 G A INTS5 Silent p.S148S 0.07 TCGA-38-A44F-01 12 29469919 29469919 T C FAR2 Silent p.Y367Y 0.13 TCGA-38-A44F-01 12 49443497 49443497 G A KMT2D Missense_Mutation p.R1292C 0.06 probably_damaging(0.989) TCGA-38-A44F-01 13 39596496 39596496 G A PROSER1 Missense_Mutation p.P233S 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-38-A44F-01 15 89386860 89386860 C T ACAN Silent p.Y344Y 0.04 TCGA-38-A44F-01 17 78163584 78163584 C T CARD14 Silent p.D292D 0.10 TCGA-38-A44F-01 19 14627610 14627610 C A DNAJB1 Nonsense_Mutation p.E154* 0.07 TCGA-38-A44F-01 19 18054500 18054500 C T CCDC124 Silent p.A216A 0.14 TCGA-38-A44F-01 1 155109396 155109396 T G SLC50A1 Missense_Mutation p.I84S 0.10 deleterious(0) possibly_damaging(0.906) TCGA-38-A44F-01 1 9324040 9324040 G A H6PD Silent p.K496K 0.07 TCGA-38-A44F-01 22 39917589 39917589 C T ATF4 Missense_Mutation p.H47Y 0.10 tolerated(0.08) benign(0.011) TCGA-38-A44F-01 2 235951088 235951088 G A SH3BP4 Missense_Mutation p.V559M 0.07 deleterious(0.02) probably_damaging(0.91) TCGA-38-A44F-01 4 126241326 126241326 G T FAT4 Nonsense_Mutation p.E1254* 0.10 TCGA-38-A44F-01 4 3318367 3318367 G T RGS12 Missense_Mutation p.C157F 0.09 tolerated(0.28) benign(0.352) TCGA-38-A44F-01 4 57797944 57797944 C T REST Missense_Mutation p.L974F 0.07 deleterious(0.03) possibly_damaging(0.601) TCGA-38-A44F-01 8 142202483 142202483 T C DENND3 Silent p.L1065L 0.06 TCGA-38-A44F-01 X 101096474 101096474 C A NXF5 Missense_Mutation p.K99N 0.10 tolerated(0.07) benign(0.007) TCGA-44-2655-01 10 105791909 105791909 C T COL17A1 3'UTR 0.20 TCGA-44-2655-01 10 128936079 128936079 G T FAM196A 3'UTR 0.13 TCGA-44-2655-01 10 128973999 128973999 C A FAM196A Missense_Mutation p.D221Y 0.11 deleterious(0.01) benign(0.344) TCGA-44-2655-01 10 13655795 13655795 C T PRPF18 Missense_Mutation p.R212C 0.15 tolerated(0.11) benign(0.025) TCGA-44-2655-01 10 27538888 27538888 G A RP11-85G18.6 Intron 0.12 TCGA-44-2655-01 11 117038323 117038323 G T PAFAH1B2 Missense_Mutation p.G200W 0.12 deleterious(0.02) possibly_damaging(0.808) TCGA-44-2655-01 11 123508905 123508905 G T SCN3B Silent p.A191A 0.15 TCGA-44-2655-01 11 15994629 15994629 C A SOX6 Missense_Mutation p.G718V 0.10 deleterious(0.03) benign(0.209) TCGA-44-2655-01 11 30930520 30930520 C A DCDC1 Silent p.V1297V 0.11 TCGA-44-2655-01 11 36250716 36250716 G T LDLRAD3 Silent p.A269A 0.12 TCGA-44-2655-01 11 40136265 40136265 G T LRRC4C Silent p.T526T 0.11 TCGA-44-2655-01 11 48510590 48510590 C A OR4A47 Silent p.G82G 0.13 TCGA-44-2655-01 11 56409316 56409316 G T OR5AP2 Missense_Mutation p.F200L 0.13 tolerated(0.19) benign(0) TCGA-44-2655-01 11 58035114 58035114 G T OR10W1 Missense_Mutation p.L73M 0.16 deleterious(0.03) benign(0.436) TCGA-44-2655-01 11 5841641 5841641 C A OR52N2 Missense_Mutation p.H26N 0.11 deleterious(0.01) benign(0.03) TCGA-44-2655-01 11 62287633 62287633 G A AHNAK Silent p.G4752G 0.10 TCGA-44-2655-01 11 65270829 65270830 - GA MALAT1 RNA 0.13 TCGA-44-2655-01 11 65685409 65685409 C A C11orf68 Missense_Mutation p.V135L 0.12 tolerated(0.18) benign(0.042) TCGA-44-2655-01 11 73712393 73712393 A T UCP3 3'UTR 0.13 TCGA-44-2655-01 11 9463643 9463643 A G IPO7 Missense_Mutation p.N973S 0.15 tolerated(0.05) benign(0.04) TCGA-44-2655-01 12 100787146 100787146 G A SLC17A8 Splice_Site p.X158_splice 0.12 TCGA-44-2655-01 12 100787197 100787197 C T SLC17A8 Missense_Mutation p.P175L 0.07 deleterious(0) probably_damaging(1) TCGA-44-2655-01 12 106821053 106821053 A T POLR3B Nonsense_Mutation p.K394* 0.08 TCGA-44-2655-01 12 110224614 110224614 C A TRPV4 Missense_Mutation p.R746L 0.11 deleterious(0) possibly_damaging(0.734) TCGA-44-2655-01 12 114804095 114804095 T A TBX5 Missense_Mutation p.N286I 0.15 tolerated(0.09) benign(0.014) TCGA-44-2655-01 12 126137133 126137133 C A TMEM132B Silent p.I682I 0.19 TCGA-44-2655-01 12 130648791 130648791 A - FZD10 Frame_Shift_Del p.D435Afs*24 0.12 TCGA-44-2655-01 12 31249876 31249876 G T DDX11 Missense_Mutation p.A572S 0.10 tolerated(0.26) possibly_damaging(0.844) TCGA-44-2655-01 12 44180315 44180315 T C IRAK4 Silent p.S434S 0.10 TCGA-44-2655-01 12 56720127 56720127 C T PAN2 Silent p.A443A 0.17 TCGA-44-2655-01 12 56963712 56963712 T C RBMS2 Missense_Mutation p.S108P 0.12 deleterious(0.03) possibly_damaging(0.685) TCGA-44-2655-01 12 57114346 57114346 A - NACA Frame_Shift_Del p.L323* 0.22 TCGA-44-2655-01 12 57843212 57843212 G T INHBC Missense_Mutation p.G156C 0.18 deleterious(0.02) possibly_damaging(0.841) TCGA-44-2655-01 12 99640640 99640640 C A ANKS1B Missense_Mutation p.D587Y 0.13 deleterious(0.01) benign(0.003) TCGA-44-2655-01 13 101755531 101755531 T A NALCN Missense_Mutation p.I1017F 0.09 deleterious(0) probably_damaging(0.999) TCGA-44-2655-01 13 23915491 23915491 C A SACS Missense_Mutation p.D842Y 0.18 probably_damaging(0.998) TCGA-44-2655-01 13 49281203 49281203 G C CYSLTR2 Missense_Mutation p.D84H 0.11 deleterious(0) probably_damaging(1) TCGA-44-2655-01 13 86369995 86369995 C T SLITRK6 Missense_Mutation p.D217N 0.23 deleterious(0) probably_damaging(0.998) TCGA-44-2655-01 13 96274626 96274626 G A DZIP1 Missense_Mutation p.H361Y 0.11 tolerated(0.18) benign(0.008) TCGA-44-2655-01 14 105414735 105414735 G T AHNAK2 Missense_Mutation p.D2351E 0.17 benign(0.019) TCGA-44-2655-01 14 106235600 106235600 T A IGHG3 Missense_Mutation p.S370C 0.09 deleterious(0) possibly_damaging(0.859) TCGA-44-2655-01 14 22181052 22181054 CTG A TRAV2 Nonsense_Mutation p.Y108* 0.10 TCGA-44-2655-01 14 24885288 24885288 G T NYNRIN Missense_Mutation p.A1445S 0.14 deleterious(0) probably_damaging(0.996) TCGA-44-2655-01 14 73725989 73725989 A G PAPLN Missense_Mutation p.Q547R 0.05 tolerated(0.12) possibly_damaging(0.875) TCGA-44-2655-01 14 86089492 86089492 G T FLRT2 Missense_Mutation p.G545V 0.11 deleterious(0) probably_damaging(0.988) TCGA-44-2655-01 14 94964180 94964180 G T SERPINA12 Silent p.T185T 0.14 TCGA-44-2655-01 14 95034546 95034546 G T SERPINA4 Missense_Mutation p.R335M 0.19 tolerated(0.07) benign(0.019) TCGA-44-2655-01 15 23811566 23811566 C G MKRN3 Missense_Mutation p.R213G 0.12 tolerated(0.33) possibly_damaging(0.551) TCGA-44-2655-01 15 25486828 25486828 C A SNORD115-40 5'Flank 0.16 TCGA-44-2655-01 15 31362381 31362381 A T TRPM1 Missense_Mutation p.S61R 0.11 deleterious(0.04) benign(0.16) TCGA-44-2655-01 15 33945030 33945030 C A RYR3 Silent p.A1418A 0.12 TCGA-44-2655-01 15 42042472 42042472 G T MGA Missense_Mutation p.D2223Y 0.12 deleterious_low_confidence(0) possibly_damaging(0.691) TCGA-44-2655-01 15 78921890 78921890 C A CHRNB4 Missense_Mutation p.V253F 0.16 deleterious(0) probably_damaging(1) TCGA-44-2655-01 15 79750731 79750731 G A KIAA1024 Missense_Mutation p.E748K 0.14 tolerated(0.13) benign(0.176) TCGA-44-2655-01 15 81592014 81592014 C A IL16 Missense_Mutation p.P783T 0.08 deleterious(0) probably_damaging(1) TCGA-44-2655-01 15 81592015 81592015 C A IL16 Missense_Mutation p.P783H 0.07 deleterious(0) probably_damaging(1) TCGA-44-2655-01 15 83826167 83826167 C A HDGFRP3 Missense_Mutation p.K153N 0.10 tolerated(0.07) possibly_damaging(0.908) TCGA-44-2655-01 16 14982998 14982998 G T NOMO1 Missense_Mutation p.D1124Y 0.11 deleterious(0) possibly_damaging(0.526) TCGA-44-2655-01 16 18881188 18881188 G C SMG1 Missense_Mutation p.S874C 0.13 tolerated(0.14) benign(0) TCGA-44-2655-01 16 20352502 20352502 C G UMOD Silent p.L496L 0.07 TCGA-44-2655-01 16 20873933 20873933 T A DCUN1D3 5'UTR 0.18 TCGA-44-2655-01 16 24834793 24834793 A T TNRC6A Missense_Mutation p.S1852C 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-44-2655-01 16 67662413 67662413 G T CTCF Silent p.A553A 0.12 TCGA-44-2655-01 16 67663408 67663408 C T CTCF Silent p.R603R 0.05 TCGA-44-2655-01 17 11656186 11656186 T A DNAH9 Missense_Mutation p.I2216N 0.16 benign(0.128) TCGA-44-2655-01 17 27209238 27209238 C T FLOT2 Silent p.K199K 0.11 TCGA-44-2655-01 17 49357467 49357467 G T UTP18 Splice_Site p.X371_splice 0.08 TCGA-44-2655-01 17 60002319 60002319 C A INTS2 Intron 0.17 TCGA-44-2655-01 17 79857813 79857813 G T ANAPC11 Missense_Mutation p.R143L 0.10 tolerated_low_confidence(0.16) benign(0.079) TCGA-44-2655-01 18 13826463 13826463 C A MC5R Missense_Mutation p.S233R 0.17 tolerated(0.07) benign(0.021) TCGA-44-2655-01 18 32446130 32446130 C A DTNA Intron 0.13 TCGA-44-2655-01 18 70417550 70417550 C G NETO1 Missense_Mutation p.D430H 0.16 deleterious(0) possibly_damaging(0.873) TCGA-44-2655-01 19 10610279 10610279 G A KEAP1 Missense_Mutation p.S144F 0.16 deleterious(0.01) probably_damaging(0.961) TCGA-44-2655-01 19 22817160 22817160 A G ZNF492 5'UTR 0.11 TCGA-44-2655-01 19 42191008 42191008 C A CEACAM7 Missense_Mutation p.G70V 0.11 deleterious(0) probably_damaging(0.997) TCGA-44-2655-01 19 52794388 52794388 T C ZNF766 Silent p.F448F 0.03 TCGA-44-2655-01 19 55014926 55014926 G T LAIR2 Silent p.L15L 0.06 TCGA-44-2655-01 19 56467169 56467169 G T NLRP8 Missense_Mutation p.G582V 0.19 tolerated(0.16) benign(0.03) TCGA-44-2655-01 19 57176423 57176423 C A ZNF835 Silent p.G48G 0.15 TCGA-44-2655-01 19 9046706 9046706 G T MUC16 Missense_Mutation p.T11642N 0.14 benign(0.402) TCGA-44-2655-01 19 9061615 9061615 G T MUC16 Missense_Mutation p.P8611T 0.11 unknown(0) TCGA-44-2655-01 19 9089295 9089295 G T MUC16 Silent p.L840L 0.11 TCGA-44-2655-01 1 101186128 101186128 C - VCAM1 Frame_Shift_Del p.P55Hfs*9 0.17 TCGA-44-2655-01 1 11562047 11562047 G T PTCHD2 Missense_Mutation p.C333F 0.08 deleterious(0) probably_damaging(0.997) TCGA-44-2655-01 1 120438759 120438759 C A ADAM30 Missense_Mutation p.Q67H 0.15 tolerated(0.11) benign(0.093) TCGA-44-2655-01 1 156126349 156126349 C G SEMA4A Missense_Mutation p.P95R 0.23 tolerated(0.39) possibly_damaging(0.507) TCGA-44-2655-01 1 157771827 157771827 G A FCRL1 Missense_Mutation p.P255L 0.23 tolerated(0.13) benign(0.346) TCGA-44-2655-01 1 158152847 158152847 C A CD1D Missense_Mutation p.L263I 0.18 deleterious(0) probably_damaging(0.987) TCGA-44-2655-01 1 158724748 158724748 C A OR6K6 Missense_Mutation p.A48E 0.11 tolerated(0.1) benign(0.002) TCGA-44-2655-01 1 161088936 161088936 G T NIT1 Missense_Mutation p.M37I 0.20 deleterious(0.02) benign(0.017) TCGA-44-2655-01 1 161088937 161088937 G T NIT1 Missense_Mutation p.A38S 0.20 tolerated(0.34) benign(0.029) TCGA-44-2655-01 1 167096659 167096659 G T DUSP27 Missense_Mutation p.G764V 0.13 tolerated(0.06) possibly_damaging(0.779) TCGA-44-2655-01 1 175325510 175325510 C A TNR Missense_Mutation p.M1021I 0.15 tolerated(0.33) benign(0.056) TCGA-44-2655-01 1 178834573 178834573 C G ANGPTL1 Silent p.V113V 0.04 TCGA-44-2655-01 1 179562935 179562935 C A TDRD5 Silent p.T191T 0.31 TCGA-44-2655-01 1 190423996 190423996 C A BRINP3 Missense_Mutation p.A9S 0.24 tolerated_low_confidence(0.1) benign(0.021) TCGA-44-2655-01 1 197057403 197057403 T A ASPM Missense_Mutation p.T3382S 0.09 tolerated(0.88) benign(0.141) TCGA-44-2655-01 1 204375279 204375279 T C PPP1R15B Missense_Mutation p.M695V 0.28 tolerated(0.59) benign(0.009) TCGA-44-2655-01 1 20517245 20517245 C T UBXN10 Missense_Mutation p.P64L 0.11 deleterious(0.02) benign(0.01) TCGA-44-2655-01 1 205897047 205897047 C T SLC26A9 Missense_Mutation p.D362N 0.10 tolerated(0.4) benign(0.044) TCGA-44-2655-01 1 21212859 21212859 C A EIF4G3 Missense_Mutation p.L703F 0.03 tolerated(0.35) probably_damaging(0.969) TCGA-44-2655-01 1 228584677 228584677 C A TRIM11 Missense_Mutation p.G277V 0.12 deleterious(0.04) possibly_damaging(0.721) TCGA-44-2655-01 1 232574993 232574993 C A SIPA1L2 Missense_Mutation p.A1298S 0.24 tolerated(0.81) benign(0.003) TCGA-44-2655-01 1 237819276 237819276 T A RYR2 Missense_Mutation p.D2707E 0.25 benign(0.015) TCGA-44-2655-01 1 240370817 240370817 T G FMN2 Missense_Mutation p.L902R 0.14 unknown(0) TCGA-44-2655-01 1 247875730 247875730 T A OR6F1 Missense_Mutation p.T110S 0.23 tolerated(0.1) possibly_damaging(0.725) TCGA-44-2655-01 1 248551067 248551067 C A OR2T6 Missense_Mutation p.P53H 0.30 tolerated(0.3) possibly_damaging(0.474) TCGA-44-2655-01 1 248551409 248551409 C A OR2T6 Missense_Mutation p.P167Q 0.18 deleterious(0.02) probably_damaging(0.987) TCGA-44-2655-01 1 248616371 248616371 G T OR2T2 Missense_Mutation p.K91N 0.13 tolerated(0.5) possibly_damaging(0.603) TCGA-44-2655-01 1 34677938 34677938 C A C1orf94 Missense_Mutation p.S551Y 0.09 deleterious(0.01) possibly_damaging(0.904) TCGA-44-2655-01 1 64088954 64088954 A C PGM1 5'UTR 0.50 TCGA-44-2655-01 1 78430042 78430042 C A FUBP1 Splice_Site p.X280_splice 0.11 TCGA-44-2655-01 1 86512537 86512537 G T COL24A1 Missense_Mutation p.R641S 0.08 tolerated(0.15) benign(0.049) TCGA-44-2655-01 20 10030593 10030593 A G ANKEF1 Missense_Mutation p.Y459C 0.11 tolerated(0.05) probably_damaging(0.931) TCGA-44-2655-01 20 21695369 21695369 C A PAX1 Silent p.P511P 0.13 TCGA-44-2655-01 20 56137217 56137217 C - PCK1 Frame_Shift_Del p.T108Qfs*27 0.12 TCGA-44-2655-01 20 58342383 58342383 C A PHACTR3 Silent p.L228L 0.19 TCGA-44-2655-01 20 58342384 58342384 C A PHACTR3 Missense_Mutation p.P229T 0.19 tolerated(0.12) probably_damaging(0.999) TCGA-44-2655-01 20 60575248 60575248 G A TAF4 Nonsense_Mutation p.Q907* 0.15 TCGA-44-2655-01 20 60990964 60990964 C T RBBP8NL Missense_Mutation p.D142N 0.21 deleterious(0.02) possibly_damaging(0.717) TCGA-44-2655-01 20 8862361 8862361 G T PLCB1 Missense_Mutation p.K1172N 0.14 tolerated(0.28) possibly_damaging(0.86) TCGA-44-2655-01 20 9496207 9496207 C A LAMP5 Missense_Mutation p.L58I 0.14 tolerated(0.26) probably_damaging(0.999) TCGA-44-2655-01 20 9561009 9561009 C A PAK7 Missense_Mutation p.G258V 0.08 deleterious_low_confidence(0.03) benign(0.074) TCGA-44-2655-01 22 26690378 26690378 G T SEZ6L Missense_Mutation p.G319V 0.13 deleterious(0) probably_damaging(1) TCGA-44-2655-01 22 26769422 26769422 C T SEZ6L Nonsense_Mutation p.Q934* 0.07 TCGA-44-2655-01 22 44028081 44028081 C T EFCAB6 Silent p.Q712Q 0.10 TCGA-44-2655-01 22 46319087 46319087 G C WNT7B Missense_Mutation p.N233K 0.17 tolerated(0.32) benign(0.069) TCGA-44-2655-01 2 107004078 107004078 C A PLGLA RNA 0.10 TCGA-44-2655-01 2 135740865 135740865 G T MAP3K19 Intron 0.14 TCGA-44-2655-01 2 155306968 155306968 C A GALNT13 Missense_Mutation p.P526T 0.13 tolerated(0.3) benign(0.003) TCGA-44-2655-01 2 165969467 165969467 G T SCN3A Silent p.L1257L 0.15 TCGA-44-2655-01 2 219922285 219922285 G A IHH Silent p.R149R 0.16 TCGA-44-2655-01 2 26667141 26667141 G T DRC1 Missense_Mutation p.K360N 0.09 deleterious(0) possibly_damaging(0.887) TCGA-44-2655-01 2 33488394 33488394 T A LTBP1 Missense_Mutation p.V851D 0.11 deleterious(0) probably_damaging(0.98) TCGA-44-2655-01 2 55563913 55563913 A G CCDC88A Silent p.S520S 0.14 TCGA-44-2655-01 2 73898278 73898278 G T ALMS1P Splice_Site 0.12 TCGA-44-2655-01 2 79363870 79363870 C T REG1P RNA 0.19 TCGA-44-2655-01 2 96954407 96954407 G A SNRNP200 Silent p.V1084V 0.12 TCGA-44-2655-01 3 112993283 112993283 C A BOC Silent p.P432P 0.08 TCGA-44-2655-01 3 121207151 121207151 C G POLQ Missense_Mutation p.D1543H 0.04 deleterious(0.04) benign(0.372) TCGA-44-2655-01 3 122002991 122002991 C A CASR Silent p.L740L 0.11 TCGA-44-2655-01 3 130285781 130285781 C A COL6A6 Silent p.I506I 0.18 TCGA-44-2655-01 3 130881250 130881250 A T NEK11 Splice_Site p.X321_splice 0.15 TCGA-44-2655-01 3 13427851 13427851 C A NUP210 Silent p.P247P 0.13 TCGA-44-2655-01 3 141900397 141900397 T C GK5 Silent p.P318P 0.12 TCGA-44-2655-01 3 142985602 142985602 C A SLC9A9 Missense_Mutation p.G627V 0.16 deleterious(0.02) benign(0.079) TCGA-44-2655-01 3 1445202 1445202 G T CNTN6 3'UTR 0.18 TCGA-44-2655-01 3 167164213 167164213 G T SERPINI2 Missense_Mutation p.P370T 0.09 deleterious(0) probably_damaging(1) TCGA-44-2655-01 3 168812877 168812877 A T MECOM Missense_Mutation p.N879K 0.12 tolerated(0.06) benign(0.341) TCGA-44-2655-01 3 35835224 35835224 C A ARPP21 Missense_Mutation p.P739H 0.12 deleterious(0) probably_damaging(0.959) TCGA-44-2655-01 3 42739015 42739015 G T HHATL Missense_Mutation p.P284T 0.10 tolerated(0.15) benign(0.008) TCGA-44-2655-01 3 47288896 47288896 C T KIF9 Silent p.R400R 0.10 TCGA-44-2655-01 3 48457786 48457786 C A PLXNB1 Missense_Mutation p.R1150L 0.17 tolerated(0.73) possibly_damaging(0.515) TCGA-44-2655-01 3 58110122 58110122 G T FLNB Missense_Mutation p.G1263V 0.16 deleterious(0) probably_damaging(1) TCGA-44-2655-01 4 106863785 106863785 G C NPNT Missense_Mutation p.S392T 0.07 tolerated(1) benign(0.001) TCGA-44-2655-01 4 126240206 126240206 C A FAT4 Missense_Mutation p.N880K 0.15 probably_damaging(0.997) TCGA-44-2655-01 4 141888839 141888839 C A RNF150 Missense_Mutation p.A225S 0.13 deleterious(0) probably_damaging(0.996) TCGA-44-2655-01 4 147796051 147796051 C T TTC29 Missense_Mutation p.E206K 0.14 deleterious(0) probably_damaging(0.997) TCGA-44-2655-01 4 185310048 185310048 C A IRF2 Missense_Mutation p.W305L 0.12 deleterious(0) possibly_damaging(0.477) TCGA-44-2655-01 4 42127651 42127651 C T BEND4 Silent p.L365L 0.14 TCGA-44-2655-01 4 70823356 70823356 G C CSN2 Missense_Mutation p.A104G 0.12 deleterious(0.02) possibly_damaging(0.739) TCGA-44-2655-01 5 101834578 101834578 G T SLCO6A1 5'UTR 0.14 TCGA-44-2655-01 5 140531692 140531692 C A PCDHB6 Missense_Mutation p.H618Q 0.13 deleterious(0.01) possibly_damaging(0.626) TCGA-44-2655-01 5 140719632 140719632 T C PCDHGA2 Missense_Mutation p.I365T 0.13 deleterious_low_confidence(0.03) benign(0.242) TCGA-44-2655-01 5 149449602 149449602 C A CSF1R Missense_Mutation p.Q448H 0.14 tolerated(0.57) benign(0.012) TCGA-44-2655-01 5 150656993 150656993 G T SLC36A3 Silent p.I499I 0.08 TCGA-44-2655-01 5 22078833 22078833 C A CDH12 5'UTR 0.07 TCGA-44-2655-01 5 35072726 35072726 G T PRLR Missense_Mutation p.T165K 0.10 deleterious(0) benign(0.374) TCGA-44-2655-01 5 53814755 53814755 G T SNX18 Nonsense_Mutation p.E325* 0.17 TCGA-44-2655-01 5 55412488 55412488 A T ANKRD55 Missense_Mutation p.Y307N 0.16 tolerated(0.07) probably_damaging(0.985) TCGA-44-2655-01 5 55439661 55439661 T A ANKRD55 Missense_Mutation p.K193N 0.13 tolerated(0.16) possibly_damaging(0.802) TCGA-44-2655-01 5 75989204 75989204 G T IQGAP2 Silent p.V1310V 0.15 TCGA-44-2655-01 5 86672763 86672763 A T RASA1 Silent p.T750T 0.14 TCGA-44-2655-01 6 111913163 111913163 C A TRAF3IP2 Missense_Mutation p.A43S 0.12 deleterious(0.03) benign(0.317) TCGA-44-2655-01 6 137519214 137519214 G A IFNGR1 Missense_Mutation p.S475F 0.09 deleterious(0) probably_damaging(0.99) TCGA-44-2655-01 6 152949423 152949423 G T SYNE1 Missense_Mutation p.A15D 0.12 benign(0.118) TCGA-44-2655-01 6 160103667 160103667 A C SOD2 Missense_Mutation p.L176R 0.07 deleterious(0) probably_damaging(0.989) TCGA-44-2655-01 6 161022092 161022092 A G LPA Missense_Mutation p.V995A 0.11 tolerated(0.19) possibly_damaging(0.601) TCGA-44-2655-01 6 24503644 24503644 G C ALDH5A1 Missense_Mutation p.A198P 0.09 deleterious(0.02) probably_damaging(0.94) TCGA-44-2655-01 6 28056964 28056964 C T ZNF165 Nonsense_Mutation p.R392* 0.05 TCGA-44-2655-01 6 29364990 29364990 A C OR12D2 Missense_Mutation p.I172L 0.05 tolerated(0.24) benign(0.075) TCGA-44-2655-01 6 3105762 3105762 G T RIPK1 Missense_Mutation p.M351I 0.10 tolerated(0.49) benign(0) TCGA-44-2655-01 6 32052275 32052275 C A TNXB Silent p.L1120L 0.17 TCGA-44-2655-01 6 32187987 32187987 G A NOTCH4 Missense_Mutation p.L412F 0.09 deleterious(0.01) probably_damaging(0.917) TCGA-44-2655-01 6 43152465 43152465 G A CUL9 Silent p.T139T 0.10 TCGA-44-2655-01 6 88228554 88228554 T A RARS2 Silent p.A431A 0.10 TCGA-44-2655-01 6 89891759 89891759 A T GABRR1 Missense_Mutation p.Y272N 0.08 deleterious(0.03) probably_damaging(1) TCGA-44-2655-01 7 107808728 107808728 C A NRCAM Missense_Mutation p.A1103S 0.10 tolerated(0.71) benign(0.055) TCGA-44-2655-01 7 117232483 117232483 G A CFTR Silent p.V754V 0.19 TCGA-44-2655-01 7 142641424 142641424 G T KEL Missense_Mutation p.Q493K 0.09 tolerated(0.26) benign(0.06) TCGA-44-2655-01 7 143748277 143748277 C A OR2A5 Silent p.A261A 0.11 TCGA-44-2655-01 7 149153030 149153030 G A ZNF777 Silent p.P28P 0.13 TCGA-44-2655-01 7 154379590 154379590 G T DPP6 Intron 0.12 TCGA-44-2655-01 7 157475536 157475536 C A PTPRN2 Missense_Mutation p.G628C 0.09 deleterious(0) probably_damaging(0.982) TCGA-44-2655-01 7 30693085 30693085 G A CRHR2 Silent p.A436A 0.13 TCGA-44-2655-01 7 39730128 39730128 G T RALA Missense_Mutation p.G88W 0.15 deleterious(0) probably_damaging(1) TCGA-44-2655-01 7 5338634 5338634 G T SLC29A4 Missense_Mutation p.A300S 0.09 tolerated(0.71) benign(0.009) TCGA-44-2655-01 7 75573147 75573147 A T POR Intron 0.12 TCGA-44-2655-01 7 75573160 75573160 C G POR Intron 0.11 TCGA-44-2655-01 7 75573193 75573193 G T POR Intron 0.09 TCGA-44-2655-01 7 87031499 87031499 C G ABCB4 Missense_Mutation p.K1258N 0.09 tolerated(0.06) benign(0.197) TCGA-44-2655-01 8 103266711 103266711 G A UBR5 Missense_Mutation p.P2740L 0.13 deleterious(0) probably_damaging(0.991) TCGA-44-2655-01 8 118812003 118812004 - G EXT1 Frame_Shift_Ins p.K730Tfs*15 0.08 TCGA-44-2655-01 8 133823374 133823374 G T PHF20L1 Splice_Site p.X310_splice 0.11 TCGA-44-2655-01 8 139737684 139737684 C A COL22A1 Splice_Site p.X714_splice 0.16 TCGA-44-2655-01 8 144689140 144689140 G A PYCRL Silent p.L119L 0.12 TCGA-44-2655-01 8 145948533 145948533 C A ZNF251 Missense_Mutation p.G171V 0.15 tolerated(0.53) benign(0) TCGA-44-2655-01 8 1581080 1581080 G T DLGAP2 Missense_Mutation p.D480Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-44-2655-01 8 17722223 17722223 C A FGL1 Missense_Mutation p.G273C 0.09 deleterious(0) probably_damaging(1) TCGA-44-2655-01 8 28385432 28385432 T A FZD3 Silent p.V385V 0.16 TCGA-44-2655-01 8 29035078 29035078 C A KIF13B Silent p.V246V 0.10 TCGA-44-2655-01 8 35608274 35608274 C G UNC5D Missense_Mutation p.L704V 0.14 deleterious(0) possibly_damaging(0.556) TCGA-44-2655-01 8 42287590 42287590 C A SLC20A2 Silent p.T567T 0.13 TCGA-44-2655-01 8 66635829 66635829 C A PDE7A Missense_Mutation p.G397V 0.08 deleterious(0.03) benign(0.201) TCGA-44-2655-01 8 77618186 77618186 G T ZFHX4 Silent p.V621V 0.14 TCGA-44-2655-01 8 77690667 77690667 A T ZFHX4 Missense_Mutation p.N1106I 0.12 possibly_damaging(0.844) TCGA-44-2655-01 9 111618088 111618088 C T ACTL7B Missense_Mutation p.M41I 0.14 tolerated(0.2) benign(0.004) TCGA-44-2655-01 9 117803262 117803262 C T TNC Missense_Mutation p.G1784S 0.24 tolerated(0.08) probably_damaging(0.984) TCGA-44-2655-01 9 123920082 123920082 G T CNTRL Nonsense_Mutation p.E1521* 0.15 TCGA-44-2655-01 9 130911883 130911883 C A LCN2 Missense_Mutation p.L27M 0.26 tolerated(0.17) benign(0.061) TCGA-44-2655-01 9 36162380 36162380 G T GLIPR2 Missense_Mutation p.W109L 0.14 deleterious(0) probably_damaging(1) TCGA-44-2655-01 9 91617197 91617197 C A S1PR3 Nonsense_Mutation p.S361* 0.17 TCGA-44-2655-01 X 100125759 100125763 GAAGG T NOX1 Frame_Shift_Del p.A29Dfs*2 0.10 TCGA-44-2655-01 X 114141816 114141816 T A HTR2C Silent p.A405A 0.14 TCGA-44-2655-01 X 118220652 118220652 C A KIAA1210 Missense_Mutation p.R1514M 0.17 deleterious(0) possibly_damaging(0.713) TCGA-44-2655-01 X 125298619 125298619 G C DCAF12L2 Missense_Mutation p.A430G 0.14 deleterious(0.03) benign(0.06) TCGA-44-2655-01 X 136649500 136649500 C G ZIC3 Missense_Mutation p.P217R 0.09 tolerated(0.05) benign(0.01) TCGA-44-2655-01 X 39932097 39932097 G A BCOR Silent p.S834S 0.15 TCGA-44-2655-01 X 46918161 46918161 G T JADE3 Missense_Mutation p.E718D 0.13 tolerated_low_confidence(0.09) benign(0.287) TCGA-44-2655-01 X 49108150 49108150 A T FOXP3 Missense_Mutation p.F374Y 0.15 deleterious(0) probably_damaging(0.998) TCGA-44-2655-01 X 54964098 54964098 C A PFKFB1 Missense_Mutation p.E386D 0.08 benign(0.061) TCGA-44-2655-01 X 62926160 62926160 T A ARHGEF9 Missense_Mutation p.K120M 0.11 deleterious(0) probably_damaging(0.91) TCGA-44-2655-01 X 75650121 75650121 G T MAGEE1 Nonsense_Mutation p.E600* 0.13 TCGA-44-2655-01 X 79978240 79978240 C A BRWD3 Missense_Mutation p.R566L 0.10 deleterious(0.04) benign(0.12) TCGA-44-2655-01 X 84606415 84606415 C T POF1B Missense_Mutation p.G161R 0.08 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-44-2655-01 X 91132563 91132563 G T PCDH11X Missense_Mutation p.G442C 0.19 deleterious(0) probably_damaging(1) TCGA-44-2656-01 10 100017495 100017495 G T LOXL4 Missense_Mutation p.P391H 0.46 tolerated(0.28) benign(0.021) TCGA-44-2656-01 10 102763886 102763886 G T LZTS2 Missense_Mutation p.R344L 0.26 deleterious(0) benign(0.366) TCGA-44-2656-01 10 103988649 103988649 A T ELOVL3 Silent p.T151T 0.40 TCGA-44-2656-01 10 104173662 104173662 C G PSD Missense_Mutation p.A473P 0.37 deleterious(0.01) benign(0.122) TCGA-44-2656-01 10 105209690 105209690 G T CALHM2 Silent p.A3A 0.46 TCGA-44-2656-01 10 106802840 106802840 C G SORCS3 Missense_Mutation p.R328G 0.43 deleterious(0.01) possibly_damaging(0.591) TCGA-44-2656-01 10 114918424 114918424 A T TCF7L2 Intron 0.14 TCGA-44-2656-01 10 118425181 118425181 G T C10orf82 Missense_Mutation p.S71Y 0.43 tolerated(0.17) probably_damaging(0.931) TCGA-44-2656-01 10 118960761 118960761 C T KCNK18 Silent p.S105S 0.42 TCGA-44-2656-01 10 126150440 126150440 G C LHPP Silent p.P3P 0.27 TCGA-44-2656-01 10 127753557 127753557 C A ADAM12 Missense_Mutation p.G479V 0.15 deleterious(0) probably_damaging(0.986) TCGA-44-2656-01 10 131958334 131958334 G T GLRX3 Splice_Site p.X92_splice 0.33 TCGA-44-2656-01 10 13264144 13264144 C A UCMA Missense_Mutation p.G126C 0.20 deleterious(0) probably_damaging(1) TCGA-44-2656-01 10 134040418 134040418 G T STK32C Silent p.G175G 0.41 TCGA-44-2656-01 10 16873350 16873350 G T CUBN Missense_Mutation p.P3477T 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-44-2656-01 10 294355 294355 T C ZMYND11 Missense_Mutation p.V436A 0.31 tolerated(0.16) possibly_damaging(0.547) TCGA-44-2656-01 10 31810643 31810643 C T ZEB1 Missense_Mutation p.P795S 0.24 deleterious(0.04) possibly_damaging(0.507) TCGA-44-2656-01 10 409175 409175 C T DIP2C Missense_Mutation p.E852K 0.26 deleterious(0) probably_damaging(0.98) TCGA-44-2656-01 10 43015267 43015267 C A ZNF37BP RNA 0.11 TCGA-44-2656-01 10 45644305 45644305 T G RP11-445N18.7 RNA 0.21 TCGA-44-2656-01 10 45907644 45907644 T A ALOX5 Missense_Mutation p.M146K 0.11 tolerated(1) benign(0) TCGA-44-2656-01 10 47087209 47087209 C T NPY4R Silent p.L142L 0.11 TCGA-44-2656-01 10 49444598 49444598 T A FRMPD2 Splice_Site p.X308_splice 0.15 TCGA-44-2656-01 10 50943220 50943220 C G OGDHL 3'UTR 0.11 TCGA-44-2656-01 10 70446412 70446412 G T TET1 Missense_Mutation p.K1784N 0.08 deleterious(0.03) possibly_damaging(0.641) TCGA-44-2656-01 10 70450858 70450858 G T TET1 Missense_Mutation p.G1900C 0.07 deleterious(0) probably_damaging(0.994) TCGA-44-2656-01 10 72293678 72293678 G T PALD1 Nonsense_Mutation p.E291* 0.15 TCGA-44-2656-01 10 73047403 73047403 G T UNC5B Missense_Mutation p.R261L 0.12 tolerated(0.06) probably_damaging(0.971) TCGA-44-2656-01 10 75290091 75290091 C T USP54 Silent p.R546R 0.12 TCGA-44-2656-01 10 76736089 76736089 G T KAT6B Splice_Site p.X665_splice 0.18 TCGA-44-2656-01 10 7763676 7763676 C T ITIH2 Missense_Mutation p.A268V 0.08 tolerated(0.47) benign(0.194) TCGA-44-2656-01 10 7773794 7773794 C A ITIH2 Silent p.S494S 0.11 TCGA-44-2656-01 10 85982088 85982088 C A LRIT2 Missense_Mutation p.G414V 0.46 deleterious(0) probably_damaging(1) TCGA-44-2656-01 10 85982089 85982089 C A LRIT2 Nonsense_Mutation p.G414* 0.45 TCGA-44-2656-01 10 87628799 87628799 C A GRID1 Missense_Mutation p.D307Y 0.45 deleterious(0.01) possibly_damaging(0.9) TCGA-44-2656-01 10 90486557 90486557 G C LIPK Missense_Mutation p.Q37H 0.38 deleterious(0) probably_damaging(0.967) TCGA-44-2656-01 10 90499787 90499787 C T LIPK Missense_Mutation p.A284V 0.34 deleterious(0.01) possibly_damaging(0.484) TCGA-44-2656-01 10 94834763 94834764 CG TCA CYP26A1 Frame_Shift_Ins p.E215Qfs*119 0.17 TCGA-44-2656-01 10 95425130 95425130 A T PDE6C Silent p.S844S 0.25 TCGA-44-2656-01 10 96005857 96005857 C A PLCE1 Missense_Mutation p.Q859K 0.43 deleterious(0.02) benign(0.045) TCGA-44-2656-01 10 96005858 96005858 A G PLCE1 Missense_Mutation p.Q859R 0.42 deleterious(0.02) benign(0.434) TCGA-44-2656-01 10 98188503 98188504 - C TLL2 Frame_Shift_Ins p.S175Efs*7 0.17 TCGA-44-2656-01 10 98802742 98802742 C T SLIT1 Missense_Mutation p.G694R 0.23 deleterious(0) probably_damaging(0.999) TCGA-44-2656-01 11 1009345 1009345 A T AP2A2 Missense_Mutation p.Q852L 0.20 deleterious(0.01) benign(0.097) TCGA-44-2656-01 11 101786030 101786030 G T KIAA1377 Missense_Mutation p.R5S 0.45 tolerated(0.05) benign(0.341) TCGA-44-2656-01 11 102643716 102643716 C A MMP10 Missense_Mutation p.R363I 0.12 deleterious(0) probably_damaging(0.974) TCGA-44-2656-01 11 105804494 105804494 C A GRIA4 Nonsense_Mutation p.S698* 0.12 TCGA-44-2656-01 11 1077683 1077683 C A MUC2 Missense_Mutation p.L145I 0.12 probably_damaging(0.997) TCGA-44-2656-01 11 113661623 113661623 G T ATF4P4 RNA 0.37 TCGA-44-2656-01 11 114183054 114183054 G T NNMT Missense_Mutation p.G217V 0.08 tolerated(0.11) possibly_damaging(0.855) TCGA-44-2656-01 11 114276519 114276519 G T RBM7 Missense_Mutation p.V146L 0.35 deleterious(0.02) benign(0.098) TCGA-44-2656-01 11 117387251 117387251 C A DSCAML1 Nonsense_Mutation p.E632* 0.37 TCGA-44-2656-01 11 117800087 117800087 T A TMPRSS13 5'Flank 0.35 TCGA-44-2656-01 11 118213394 118213394 C T CD3D 5'UTR 0.10 TCGA-44-2656-01 11 119061008 119061008 A G CCDC153 3'UTR 0.44 TCGA-44-2656-01 11 123810656 123810656 G T OR4D5 Missense_Mutation p.K111N 0.37 deleterious(0.02) probably_damaging(0.991) TCGA-44-2656-01 11 123848123 123848123 G T OR10S1 Silent p.P92P 0.10 TCGA-44-2656-01 11 124007382 124007382 G C VWA5A Splice_Site p.X542_splice 0.11 TCGA-44-2656-01 11 124413479 124413479 G T OR8B12 Silent p.I24I 0.42 TCGA-44-2656-01 11 125299921 125299921 C A PKNOX2 Missense_Mutation p.A359D 0.13 deleterious(0.03) possibly_damaging(0.76) TCGA-44-2656-01 11 126306857 126306857 G A KIRREL3 Silent p.R467R 0.38 TCGA-44-2656-01 11 1268153 1272023 11:1268153-1272023 - MUC5B large deletion p.S3350Pfs*13 0.08 TCGA-44-2656-01 11 130340820 130340820 G A ADAMTS15 Missense_Mutation p.G576R 0.06 deleterious(0) possibly_damaging(0.569) TCGA-44-2656-01 11 134239735 134239735 C T GLB1L2 Missense_Mutation p.T355M 0.04 deleterious(0) probably_damaging(0.999) TCGA-44-2656-01 11 14793554 14793554 T C PDE3B Intron 0.23 TCGA-44-2656-01 11 15243085 15243085 G T INSC Silent p.R341R 0.26 TCGA-44-2656-01 11 1651332 1651332 G T KRTAP5-5 Missense_Mutation p.G88C 0.12 deleterious_low_confidence(0) unknown(0) TCGA-44-2656-01 11 18159297 18159297 G A MRGPRX3 Nonsense_Mutation p.W183* 0.13 TCGA-44-2656-01 11 18754824 18754824 C A PTPN5 Silent p.T392T 0.26 TCGA-44-2656-01 11 20628585 20628585 G T SLC6A5 Missense_Mutation p.A238S 0.21 tolerated(0.09) possibly_damaging(0.67) TCGA-44-2656-01 11 2185532 2185532 C A TH Silent p.V506V 0.29 TCGA-44-2656-01 11 22707259 22707259 G T GAS2 Missense_Mutation p.G64V 0.15 deleterious(0) probably_damaging(1) TCGA-44-2656-01 11 30032330 30032330 C A KCNA4 Missense_Mutation p.K632N 0.18 tolerated_low_confidence(0.16) benign(0.15) TCGA-44-2656-01 11 32456264 32456264 G C WT1 Missense_Mutation p.P210A 0.07 deleterious_low_confidence(0.01) benign(0.228) TCGA-44-2656-01 11 33054339 33054339 G A DEPDC7 Silent p.K421K 0.27 TCGA-44-2656-01 11 33565835 33565835 C A KIAA1549L Missense_Mutation p.T612N 0.11 tolerated_low_confidence(0.09) benign(0.038) TCGA-44-2656-01 11 34937775 34937775 C A APIP Missense_Mutation p.Q19H 0.28 tolerated(0.12) benign(0.009) TCGA-44-2656-01 11 36597537 36597537 G T RAG1 Missense_Mutation p.V895L 0.09 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-44-2656-01 11 4104157 4104157 C T STIM1 Missense_Mutation p.H395Y 0.23 deleterious(0.01) probably_damaging(0.986) TCGA-44-2656-01 11 4389399 4389399 C A OR52B4 Missense_Mutation p.G43W 0.14 deleterious(0) probably_damaging(0.999) TCGA-44-2656-01 11 44228501 44228501 G T EXT2 Missense_Mutation p.G585C 0.20 deleterious(0) probably_damaging(0.999) TCGA-44-2656-01 11 44228502 44228502 G T EXT2 Missense_Mutation p.G585V 0.21 deleterious(0) probably_damaging(0.993) TCGA-44-2656-01 11 4510989 4510989 C G OR52K1 Missense_Mutation p.P287A 0.20 deleterious(0) possibly_damaging(0.79) TCGA-44-2656-01 11 4661635 4661635 C G OR51D1 Silent p.T205T 0.20 TCGA-44-2656-01 11 47776187 47776187 C - FNBP4 Frame_Shift_Del p.D115Tfs*13 0.23 TCGA-44-2656-01 11 5444315 5444315 T A OR51Q1 Missense_Mutation p.S295R 0.10 deleterious(0.01) benign(0.111) TCGA-44-2656-01 11 55135664 55135664 C A OR4A15 Missense_Mutation p.S102Y 0.28 deleterious_low_confidence(0) possibly_damaging(0.487) TCGA-44-2656-01 11 55563649 55563649 C T OR5D14 Silent p.T206T 0.08 TCGA-44-2656-01 11 56128272 56128272 C A OR8J1 Missense_Mutation p.L184M 0.27 deleterious(0.01) probably_damaging(0.989) TCGA-44-2656-01 11 56510307 56510307 T C OR9G4 Silent p.T327T 0.12 TCGA-44-2656-01 11 58034387 58034387 C A OR10W1 3'UTR 0.08 TCGA-44-2656-01 11 59224639 59224639 T C OR4D6 Missense_Mutation p.L69P 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-44-2656-01 11 59282792 59282792 T C OR4D9 Missense_Mutation p.M136T 0.09 deleterious(0) possibly_damaging(0.842) TCGA-44-2656-01 11 60636728 60636728 G T ZP1 Missense_Mutation p.V103L 0.24 deleterious(0.02) benign(0.238) TCGA-44-2656-01 11 60781463 60781463 T C CD6 Missense_Mutation p.V455A 0.10 tolerated(0.17) benign(0.037) TCGA-44-2656-01 11 61121427 61121427 C G CYB561A3 Silent p.G91G 0.25 TCGA-44-2656-01 11 62398602 62398602 C A GANAB Missense_Mutation p.Q372H 0.21 tolerated(0.1) benign(0.251) TCGA-44-2656-01 11 62415826 62415826 G A INTS5 Missense_Mutation p.R576C 0.08 tolerated(0.05) possibly_damaging(0.747) TCGA-44-2656-01 11 62569274 62569274 G A NXF1 Silent p.N192N 0.30 TCGA-44-2656-01 11 62749428 62749428 T A SLC22A6 Missense_Mutation p.Y228F 0.24 tolerated(0.34) benign(0.101) TCGA-44-2656-01 11 63884429 63884429 C T FLRT1 Silent p.D230D 0.14 TCGA-44-2656-01 11 64684617 64684617 C A ATG2A 5'UTR 0.13 TCGA-44-2656-01 11 65294550 65294550 C T SCYL1 Missense_Mutation p.R271C 0.07 deleterious(0.05) benign(0.006) TCGA-44-2656-01 11 65315462 65315462 G A LTBP3 Missense_Mutation p.P592L 0.12 tolerated(0.11) benign(0.018) TCGA-44-2656-01 11 66001697 66001697 G A PACS1 Silent p.S696S 0.14 TCGA-44-2656-01 11 66478225 66478225 T A SPTBN2 Missense_Mutation p.M301L 0.11 tolerated(0.33) benign(0) TCGA-44-2656-01 11 67049774 67049774 C G ADRBK1 Missense_Mutation p.H330Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-44-2656-01 11 67559807 67559807 T A FAM86C2P RNA 0.08 TCGA-44-2656-01 11 6977816 6977816 T A ZNF215 3'UTR 0.10 TCGA-44-2656-01 11 7092508 7092508 A T NLRP14 Missense_Mutation p.E1084V 0.15 deleterious(0.02) benign(0.201) TCGA-44-2656-01 11 74899193 74899193 C A SLCO2B1 Missense_Mutation p.P329T 0.32 tolerated(0.4) benign(0.018) TCGA-44-2656-01 11 78468036 78468036 C A TENM4 Missense_Mutation p.C857F 0.25 deleterious(0) probably_damaging(0.999) TCGA-44-2656-01 11 8009070 8009070 G T EIF3F Silent p.A57A 0.16 TCGA-44-2656-01 11 85459316 85459316 T A SYTL2 Silent p.A84A 0.33 TCGA-44-2656-01 11 92531039 92531039 A T FAT3 Silent p.L1620L 0.38 TCGA-44-2656-01 12 104126791 104126792 - T STAB2 Frame_Shift_Ins p.L1765Ffs*29 0.31 TCGA-44-2656-01 12 111336809 111336809 G T CCDC63 Missense_Mutation p.D408Y 0.39 deleterious(0.02) possibly_damaging(0.878) TCGA-44-2656-01 12 111758230 111758230 C T CUX2 Missense_Mutation p.S806L 0.19 tolerated(0.13) benign(0.197) TCGA-44-2656-01 12 114804114 114804114 C T TBX5 Missense_Mutation p.A280T 0.08 tolerated(0.63) benign(0.003) TCGA-44-2656-01 12 115114148 115114148 C A TBX3 Missense_Mutation p.A357S 0.39 tolerated(0.76) benign(0.169) TCGA-44-2656-01 12 120263085 120263085 C A CIT Missense_Mutation p.G281C 0.43 deleterious(0) probably_damaging(1) TCGA-44-2656-01 12 122617836 122617836 G T MLXIP Intron 0.13 TCGA-44-2656-01 12 133779409 133779409 G T ZNF268 Missense_Mutation p.Q379H 0.27 deleterious(0.02) probably_damaging(0.988) TCGA-44-2656-01 12 133779410 133779410 A T ZNF268 Nonsense_Mutation p.K380* 0.27 TCGA-44-2656-01 12 22089557 22089557 C G ABCC9 Missense_Mutation p.G18R 0.22 deleterious(0.02) probably_damaging(0.959) TCGA-44-2656-01 12 30783888 30783888 G T IPO8 Missense_Mutation p.A1007E 0.36 tolerated(0.05) benign(0) TCGA-44-2656-01 12 30837234 30837234 C A IPO8 Splice_Site p.X108_splice 0.30 TCGA-44-2656-01 12 32260458 32260458 G C BICD1 Missense_Mutation p.E65Q 0.56 deleterious(0) probably_damaging(0.997) TCGA-44-2656-01 12 32908775 32908775 C A YARS2 Missense_Mutation p.G12C 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.579) TCGA-44-2656-01 12 45810526 45810526 C T ANO6 Silent p.L707L 0.36 TCGA-44-2656-01 12 46320773 46320773 C A SCAF11 Missense_Mutation p.G904V 0.46 deleterious(0) benign(0.035) TCGA-44-2656-01 12 4722693 4722693 A G DYRK4 Missense_Mutation p.K446R 0.23 tolerated(0.27) benign(0.003) TCGA-44-2656-01 12 48143570 48143570 C A RAPGEF3 Missense_Mutation p.W283L 0.34 deleterious(0) probably_damaging(1) TCGA-44-2656-01 12 49170251 49170251 C A ADCY6 Missense_Mutation p.V499L 0.38 deleterious(0) probably_damaging(0.934) TCGA-44-2656-01 12 50344589 50344589 G T AQP2 5'UTR 0.43 TCGA-44-2656-01 12 51442900 51442900 G T LETMD1 Missense_Mutation p.G69V 0.39 tolerated(0.16) benign(0.104) TCGA-44-2656-01 12 51689596 51689596 C G BIN2 Missense_Mutation p.V249L 0.37 deleterious(0.03) possibly_damaging(0.474) TCGA-44-2656-01 12 52885477 52885477 C A KRT6A Missense_Mutation p.W195L 0.39 deleterious(0.01) possibly_damaging(0.534) TCGA-44-2656-01 12 52910579 52910579 A G KRT5 Silent p.D427D 0.41 TCGA-44-2656-01 12 53400188 53400188 C A EIF4B 5'UTR 0.48 TCGA-44-2656-01 12 54767848 54767848 G C ZNF385A Silent p.T110T 0.38 TCGA-44-2656-01 12 55356793 55356793 G A TESPA1 Nonsense_Mutation p.R297* 0.43 TCGA-44-2656-01 12 55714510 55714510 C A OR6C1 Missense_Mutation p.L43I 0.45 tolerated_low_confidence(1) benign(0) TCGA-44-2656-01 12 56811918 56811918 C A TIMELESS Nonsense_Mutation p.E1152* 0.41 TCGA-44-2656-01 12 57345827 57345827 C A RDH16 Missense_Mutation p.A314S 0.48 tolerated(0.08) benign(0.046) TCGA-44-2656-01 12 6135206 6135206 C A VWF Missense_Mutation p.V992L 0.19 deleterious(0) probably_damaging(0.935) TCGA-44-2656-01 12 6887608 6887608 C A LAG3 3'UTR 0.04 TCGA-44-2656-01 12 7636091 7636091 C A CD163 Missense_Mutation p.G987V 0.20 deleterious(0) probably_damaging(1) TCGA-44-2656-01 12 7636092 7636092 C A CD163 Missense_Mutation p.G987W 0.20 deleterious(0) probably_damaging(1) TCGA-44-2656-01 12 76424788 76424788 C A PHLDA1 Missense_Mutation p.R245L 0.45 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-44-2656-01 12 91358003 91358003 G T EPYC Missense_Mutation p.P300H 0.40 deleterious(0) probably_damaging(0.993) TCGA-44-2656-01 12 95228171 95228171 C A MIR492 5'Flank 0.33 TCGA-44-2656-01 13 103718254 103718254 C A SLC10A2 Missense_Mutation p.A116S 0.10 tolerated(0.19) benign(0.129) TCGA-44-2656-01 13 108861585 108861585 G A LIG4 Silent p.L678L 0.18 TCGA-44-2656-01 13 109793613 109793613 C A MYO16 Missense_Mutation p.P1663T 0.16 tolerated_low_confidence(0.2) benign(0.021) TCGA-44-2656-01 13 111132683 111132683 G T COL4A2 Nonsense_Mutation p.G902* 0.18 TCGA-44-2656-01 13 111158944 111158944 C A COL4A2 Missense_Mutation p.Q1529K 0.16 unknown(0) TCGA-44-2656-01 13 113798162 113798162 C A F10 Intron 0.12 TCGA-44-2656-01 13 114107681 114107681 C T ADPRHL1 Silent p.K24K 0.19 TCGA-44-2656-01 13 25356050 25356050 G A RNF17 Silent p.Q193Q 0.17 TCGA-44-2656-01 13 25745640 25745640 C A AMER2 Missense_Mutation p.A40S 0.10 tolerated_low_confidence(0.26) benign(0.19) TCGA-44-2656-01 13 30801606 30801606 T C KATNAL1 Missense_Mutation p.I364V 0.19 deleterious(0.01) probably_damaging(0.91) TCGA-44-2656-01 13 31713001 31713001 C T HSPH1 Missense_Mutation p.A709T 0.08 tolerated(0.39) possibly_damaging(0.851) TCGA-44-2656-01 13 32811626 32811626 A T FRY Missense_Mutation p.E1974V 0.10 tolerated(0.16) benign(0.196) TCGA-44-2656-01 13 33320130 33320130 A T PDS5B Silent p.S876S 0.11 TCGA-44-2656-01 13 33703975 33703975 C A STARD13 Missense_Mutation p.R280L 0.14 tolerated(0.08) benign(0.314) TCGA-44-2656-01 13 33704350 33704350 C A STARD13 Missense_Mutation p.R155L 0.19 deleterious(0.02) possibly_damaging(0.862) TCGA-44-2656-01 13 34404943 34404943 A T RFC3 Nonsense_Mutation p.R221* 0.20 TCGA-44-2656-01 13 35733541 35733541 C A NBEA Missense_Mutation p.P1078Q 0.16 deleterious_low_confidence(0.04) benign(0.164) TCGA-44-2656-01 13 41507884 41507884 G C ELF1 Missense_Mutation p.Q513E 0.12 tolerated(0.09) benign(0.173) TCGA-44-2656-01 13 58209184 58209184 G C PCDH17 Missense_Mutation p.S835T 0.14 tolerated(0.58) benign(0.074) TCGA-44-2656-01 13 60545246 60545246 C A DIAPH3 Nonsense_Mutation p.E567* 0.23 TCGA-44-2656-01 13 70314575 70314575 T A KLHL1 Missense_Mutation p.S585C 0.15 deleterious(0.01) probably_damaging(0.971) TCGA-44-2656-01 13 73319235 73319235 T A BORA Missense_Mutation p.S210T 0.19 tolerated(0.43) benign(0.237) TCGA-44-2656-01 13 86369289 86369289 G T SLITRK6 Missense_Mutation p.P452Q 0.07 deleterious(0.01) probably_damaging(0.988) TCGA-44-2656-01 13 92101100 92101100 G T GPC5 Missense_Mutation p.Q83H 0.16 tolerated(0.11) benign(0.046) TCGA-44-2656-01 14 101515025 101515025 G T MIR544A RNA 0.28 TCGA-44-2656-01 14 102476788 102476788 G T DYNC1H1 Nonsense_Mutation p.E2133* 0.15 TCGA-44-2656-01 14 105405564 105405564 G - AHNAK2 Frame_Shift_Del p.T5409Lfs*2 0.24 TCGA-44-2656-01 14 105407714 105407714 C T AHNAK2 Missense_Mutation p.E4692K 0.09 benign(0.032) TCGA-44-2656-01 14 105416636 105416636 G - AHNAK2 Frame_Shift_Del p.Q1718Rfs*5 0.11 TCGA-44-2656-01 14 105418949 105418949 C A AHNAK2 Missense_Mutation p.G947C 0.14 probably_damaging(0.996) TCGA-44-2656-01 14 105518393 105518393 G T GPR132 Silent p.G27G 0.16 TCGA-44-2656-01 14 106208131 106208131 C G IGHG1 Silent p.G224G 0.44 TCGA-44-2656-01 14 20528425 20528425 C T OR4L1 Silent p.S74S 0.16 TCGA-44-2656-01 14 21424254 21424254 C A RNASE2 Silent p.I108I 0.13 TCGA-44-2656-01 14 21486634 21486634 G T NDRG2 Silent p.T281T 0.15 TCGA-44-2656-01 14 22205254 22205254 C A TRAV4 Silent p.L106L 0.25 TCGA-44-2656-01 14 22337510 22337510 C A TRAV13-1 Missense_Mutation p.P101T 0.27 tolerated(0.08) benign(0.23) TCGA-44-2656-01 14 22356183 22356183 G C TRAV12-2 Missense_Mutation p.Q14H 0.23 tolerated(0.12) unknown(0) TCGA-44-2656-01 14 22459119 22459119 C T TRAV16 Silent p.L91L 0.36 TCGA-44-2656-01 14 22539228 22539228 G T TRAV22 Missense_Mutation p.D30Y 0.28 tolerated(0.14) benign(0.022) TCGA-44-2656-01 14 22555000 22555000 G A TRAV23DV6 Silent p.Q42Q 0.23 TCGA-44-2656-01 14 22951283 22951283 G T TRAJ54 Missense_Mutation p.Q3H 0.27 unknown(0) TCGA-44-2656-01 14 23517500 23517500 G A CDH24 Missense_Mutation p.P717S 0.15 tolerated(0.12) benign(0.119) TCGA-44-2656-01 14 23842476 23842476 A G IL25 Missense_Mutation p.E50G 0.08 deleterious(0) possibly_damaging(0.867) TCGA-44-2656-01 14 24785583 24785583 G A LTB4R Silent p.L242L 0.19 TCGA-44-2656-01 14 24877306 24877306 G T NYNRIN Missense_Mutation p.G144C 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-2656-01 14 25075914 25075914 G T GZMH Silent p.A212A 0.18 TCGA-44-2656-01 14 30133065 30133065 C A PRKD1 Missense_Mutation p.G179V 0.25 deleterious(0) probably_damaging(0.994) TCGA-44-2656-01 14 31778370 31778370 G T AL136418.1 5'Flank 0.30 TCGA-44-2656-01 14 47601038 47601038 C T MDGA2 Silent p.K268K 0.15 TCGA-44-2656-01 14 57684713 57684713 T G EXOC5 Missense_Mutation p.T534P 0.09 tolerated(0.07) possibly_damaging(0.701) TCGA-44-2656-01 14 63671738 63671738 G A RHOJ Missense_Mutation p.V51M 0.10 deleterious(0) possibly_damaging(0.886) TCGA-44-2656-01 14 65208508 65208508 A G PLEKHG3 Missense_Mutation p.N702S 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-44-2656-01 14 66135974 66135974 G C FUT8 Missense_Mutation p.C204S 0.20 deleterious(0) possibly_damaging(0.823) TCGA-44-2656-01 14 67675062 67675062 C T FAM71D Silent p.T352T 0.29 TCGA-44-2656-01 14 70490078 70490078 G T SMOC1 Missense_Mutation p.R402L 0.16 deleterious(0) probably_damaging(0.999) TCGA-44-2656-01 14 70714185 70714185 G T ADAM21P1 RNA 0.11 TCGA-44-2656-01 14 70924409 70924409 C A ADAM21 Missense_Mutation p.L65M 0.05 tolerated(0.11) possibly_damaging(0.856) TCGA-44-2656-01 14 70991190 70991190 C A ADAM20 Missense_Mutation p.Q145H 0.10 deleterious(0.01) benign(0.338) TCGA-44-2656-01 14 73637737 73637737 C T PSEN1 Missense_Mutation p.T107I 0.06 deleterious(0) probably_damaging(0.998) TCGA-44-2656-01 14 73718501 73718501 G C PAPLN Missense_Mutation p.R240P 0.11 tolerated(0.24) probably_damaging(0.976) TCGA-44-2656-01 14 75376671 75376671 C A RPS6KL1 Missense_Mutation p.R282M 0.27 tolerated(0.22) possibly_damaging(0.524) TCGA-44-2656-01 14 77791214 77791214 C T GSTZ1 Missense_Mutation p.P6L 0.12 deleterious(0.01) probably_damaging(0.987) TCGA-44-2656-01 14 80669342 80669342 G T DIO2 Missense_Mutation p.A207E 0.21 deleterious(0.03) probably_damaging(0.94) TCGA-44-2656-01 14 88407816 88407816 C A GALC Missense_Mutation p.G586V 0.11 deleterious(0) probably_damaging(0.999) TCGA-44-2656-01 14 91927780 91927780 C A SMEK1 Missense_Mutation p.G766V 0.15 tolerated(0.36) benign(0.095) TCGA-44-2656-01 14 93653197 93653197 G A TMEM251 3'UTR 0.33 TCGA-44-2656-01 14 94731788 94731788 C T PPP4R4 Silent p.P754P 0.07 TCGA-44-2656-01 14 94750231 94750231 G T SERPINA10 3'UTR 0.16 TCGA-44-2656-01 14 94914953 94914953 G T SERPINA11 Silent p.T53T 0.24 TCGA-44-2656-01 14 94936027 94936027 A T SERPINA9 Missense_Mutation p.F69I 0.21 deleterious(0) probably_damaging(0.999) TCGA-44-2656-01 14 94936140 94936140 C G SERPINA9 Missense_Mutation p.G31A 0.20 tolerated(0.09) possibly_damaging(0.646) TCGA-44-2656-01 14 99641151 99641151 C G BCL11B Silent p.A674A 0.24 TCGA-44-2656-01 15 102197168 102197168 C T TARSL2 Silent p.K739K 0.22 TCGA-44-2656-01 15 25448271 25448271 T C SNORD115-20 5'Flank 0.31 TCGA-44-2656-01 15 40468681 40468681 C T BUB1B Missense_Mutation p.R130C 0.17 deleterious(0.03) benign(0.011) TCGA-44-2656-01 15 40628796 40628796 C T C15orf52 Missense_Mutation p.R333K 0.16 deleterious(0) probably_damaging(0.998) TCGA-44-2656-01 15 43585794 43585794 T A TGM7 Missense_Mutation p.S16C 0.35 tolerated(0.15) probably_damaging(0.936) TCGA-44-2656-01 15 45444142 45444142 C A DUOX1 Missense_Mutation p.Q1029K 0.38 tolerated(0.12) benign(0.016) TCGA-44-2656-01 15 48500307 48500307 C A SLC12A1 Missense_Mutation p.L131M 0.29 deleterious(0) probably_damaging(1) TCGA-44-2656-01 15 50741619 50741619 G T USP8 Missense_Mutation p.G91V 0.21 deleterious(0) probably_damaging(1) TCGA-44-2656-01 15 54307745 54307745 T A UNC13C Missense_Mutation p.M882K 0.29 deleterious_low_confidence(0) benign(0.216) TCGA-44-2656-01 15 56140724 56140724 T C NEDD4 Missense_Mutation p.N840S 0.29 deleterious(0) probably_damaging(0.98) TCGA-44-2656-01 15 59961504 59961504 T A BNIP2 Silent p.T376T 0.31 TCGA-44-2656-01 15 62264919 62264919 T C VPS13C Missense_Mutation p.T888A 0.34 tolerated(0.76) benign(0.001) TCGA-44-2656-01 15 73852136 73852136 C A C15orf60 Missense_Mutation p.S227Y 0.26 deleterious(0) probably_damaging(0.957) TCGA-44-2656-01 15 74467708 74467708 C T ISLR Missense_Mutation p.T170I 0.29 tolerated(0.37) benign(0.046) TCGA-44-2656-01 15 74627454 74627454 C - CCDC33 Intron 0.19 TCGA-44-2656-01 15 75650895 75650895 C T MAN2C1 Missense_Mutation p.A788T 0.23 tolerated(0.12) benign(0.015) TCGA-44-2656-01 15 83215961 83215961 G A CPEB1 Nonsense_Mutation p.Q476* 0.33 TCGA-44-2656-01 15 84237394 84237394 G T SH3GL3 Missense_Mutation p.G101W 0.27 deleterious(0) probably_damaging(1) TCGA-44-2656-01 15 85326477 85326477 G C ZNF592 Missense_Mutation p.V191L 0.31 tolerated(0.28) possibly_damaging(0.45) TCGA-44-2656-01 15 86838537 86838537 C A AGBL1 Silent p.R712R 0.36 TCGA-44-2656-01 15 98514435 98514435 C T ARRDC4 3'UTR 0.39 TCGA-44-2656-01 16 1706003 1706003 G T CRAMP1L Silent p.V415V 0.12 TCGA-44-2656-01 16 20043655 20043655 G T GPR139 Missense_Mutation p.T155N 0.09 tolerated(0.11) benign(0.081) TCGA-44-2656-01 16 2018677 2018677 G T RNF151 Missense_Mutation p.E163D 0.33 tolerated(0.15) benign(0.014) TCGA-44-2656-01 16 20360484 20360484 C A UMOD Missense_Mutation p.V47F 0.11 deleterious(0.01) possibly_damaging(0.66) TCGA-44-2656-01 16 20380897 20380897 C A PDILT Missense_Mutation p.A345S 0.14 deleterious(0.03) possibly_damaging(0.599) TCGA-44-2656-01 16 21328321 21328321 C T CRYM-AS1 RNA 0.04 TCGA-44-2656-01 16 21737980 21737980 G T OTOA Splice_Site p.X672_splice 0.09 TCGA-44-2656-01 16 21817525 21817525 C T RRN3P1 RNA 0.17 TCGA-44-2656-01 16 21999929 21999929 A C PDZD9 Missense_Mutation p.V72G 0.18 deleterious(0) probably_damaging(0.961) TCGA-44-2656-01 16 22237038 22237038 G A EEF2K 5'UTR 0.05 TCGA-44-2656-01 16 2228522 2228522 C T CASKIN1 3'UTR 0.21 TCGA-44-2656-01 16 23634330 23634330 C A PALB2 Missense_Mutation p.D986Y 0.25 deleterious(0) possibly_damaging(0.829) TCGA-44-2656-01 16 23713521 23713521 T C ERN2 Silent p.A433A 0.17 TCGA-44-2656-01 16 24046867 24046867 C A PRKCB Silent p.L176L 0.18 TCGA-44-2656-01 16 24578506 24578506 G C RBBP6 Missense_Mutation p.R544S 0.18 deleterious_low_confidence(0.04) probably_damaging(0.977) TCGA-44-2656-01 16 24895432 24895432 C T SLC5A11 Missense_Mutation p.A215V 0.12 deleterious(0) probably_damaging(0.969) TCGA-44-2656-01 16 2732501 2732501 A T KCTD5 5'UTR 0.21 TCGA-44-2656-01 16 2814828 2814828 A G SRRM2 Silent p.R1433R 0.04 TCGA-44-2656-01 16 28509228 28509228 G T APOBR Missense_Mutation p.A956S 0.31 tolerated(0.19) benign(0.024) TCGA-44-2656-01 16 28878264 28878264 G T SH2B1 Silent p.G283G 0.17 TCGA-44-2656-01 16 28898990 28898990 C T ATP2A1 Missense_Mutation p.A292V 0.10 deleterious(0) probably_damaging(0.995) TCGA-44-2656-01 16 29675148 29675148 G T SPN Missense_Mutation p.L33F 0.23 tolerated(0.42) benign(0.061) TCGA-44-2656-01 16 29897071 29897071 C T SEZ6L2 Splice_Site p.X403_splice 0.19 TCGA-44-2656-01 16 31228129 31228129 C T PYDC1 Missense_Mutation p.R74H 0.10 tolerated(0.1) possibly_damaging(0.803) TCGA-44-2656-01 16 31471201 31471201 C T ARMC5 Missense_Mutation p.P119L 0.19 tolerated_low_confidence(0.09) unknown(0) TCGA-44-2656-01 16 31473953 31473953 G C ARMC5 Missense_Mutation p.R362P 0.20 deleterious(0) probably_damaging(0.997) TCGA-44-2656-01 16 333356 333356 C A PDIA2 Missense_Mutation p.L63M 0.25 deleterious(0.05) possibly_damaging(0.891) TCGA-44-2656-01 16 46715307 46715307 C G VPS35 Missense_Mutation p.G102A 0.17 deleterious(0.04) probably_damaging(0.913) TCGA-44-2656-01 16 5078049 5078049 C A NAGPA Missense_Mutation p.R353L 0.16 benign(0.013) TCGA-44-2656-01 16 58616700 58616700 T A CNOT1 Missense_Mutation p.E347D 0.16 tolerated(0.22) benign(0.024) TCGA-44-2656-01 16 67680671 67680671 G A RLTPR Missense_Mutation p.R174Q 0.07 deleterious(0.01) benign(0.023) TCGA-44-2656-01 16 67680809 67680809 G T RLTPR Missense_Mutation p.D182Y 0.24 deleterious(0) probably_damaging(0.991) TCGA-44-2656-01 16 68849475 68849475 G T CDH1 Missense_Mutation p.V460L 0.26 tolerated(0.09) benign(0.011) TCGA-44-2656-01 16 69660388 69660388 C T NFAT5 Silent p.S70S 0.08 TCGA-44-2656-01 16 70897063 70897063 G T HYDIN Missense_Mutation p.R3832S 0.12 benign(0) TCGA-44-2656-01 16 70908208 70908208 C A HYDIN Missense_Mutation p.A3650S 0.14 possibly_damaging(0.866) TCGA-44-2656-01 16 74657793 74657793 C G RFWD3 3'UTR 0.20 TCGA-44-2656-01 16 76486483 76486483 C A CNTNAP4 Missense_Mutation p.P311T 0.16 deleterious(0.04) benign(0.016) TCGA-44-2656-01 16 76486484 76486484 C G CNTNAP4 Missense_Mutation p.P311R 0.16 deleterious(0.05) benign(0.027) TCGA-44-2656-01 16 815525 815525 A T MSLN Splice_Site p.X235_splice 0.14 TCGA-44-2656-01 16 83933047 83933047 G T MLYCD Missense_Mutation p.G100C 0.30 deleterious(0.03) possibly_damaging(0.504) TCGA-44-2656-01 16 84906614 84906614 G C CRISPLD2 Missense_Mutation p.R333P 0.20 deleterious(0) probably_damaging(0.999) TCGA-44-2656-01 16 86602482 86602482 G T FOXC2 3'UTR 0.09 TCGA-44-2656-01 16 90095676 90095676 C T C16orf3 Silent p.K25K 0.09 TCGA-44-2656-01 17 10399714 10399714 G T MYH1 Missense_Mutation p.S1603R 0.32 deleterious(0.04) benign(0.006) TCGA-44-2656-01 17 10448802 10448802 G A MYH2 Silent p.F122F 0.33 TCGA-44-2656-01 17 11726350 11726350 A T DNAH9 Missense_Mutation p.Q3082L 0.41 probably_damaging(0.916) TCGA-44-2656-01 17 1478904 1478904 G T SLC43A2 Missense_Mutation p.F568L 0.09 deleterious_low_confidence(0.04) benign(0.031) TCGA-44-2656-01 17 21201787 21201787 C A MAP2K3 Missense_Mutation p.P38T 0.10 tolerated(0.2) benign(0) TCGA-44-2656-01 17 21318931 21318931 G T KCNJ12 Missense_Mutation p.A93S 0.13 tolerated(0.06) benign(0.155) TCGA-44-2656-01 17 25967657 25967657 C T LGALS9 Missense_Mutation p.P64L 0.32 deleterious(0.04) probably_damaging(0.93) TCGA-44-2656-01 17 31105502 31105502 C A MYO1D Nonsense_Mutation p.E132* 0.28 TCGA-44-2656-01 17 3324705 3324705 G T OR3A3 Missense_Mutation p.G282W 0.28 deleterious(0.02) benign(0.114) TCGA-44-2656-01 17 33513590 33513590 C A UNC45B 3'UTR 0.24 TCGA-44-2656-01 17 36935738 36935738 C T PIP4K2B Silent p.L184L 0.33 TCGA-44-2656-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.29 deleterious(0) probably_damaging(0.994) TCGA-44-2656-01 17 39578550 39578550 T G KRT37 Missense_Mutation p.D290A 0.06 deleterious(0.01) probably_damaging(1) TCGA-44-2656-01 17 39728253 39728253 T A KRT9 5'UTR 0.50 TCGA-44-2656-01 17 40175884 40175884 C T NKIRAS2 Silent p.N183N 0.36 TCGA-44-2656-01 17 42455747 42455747 C A ITGA2B Missense_Mutation p.A693S 0.44 tolerated(0.12) probably_damaging(0.934) TCGA-44-2656-01 17 5045714 5045714 G A USP6 Missense_Mutation p.G579R 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-2656-01 17 56270730 56270730 A T EPX Splice_Site p.X57_splice 0.17 TCGA-44-2656-01 17 57043137 57043137 C A PPM1E Silent p.L222L 0.04 TCGA-44-2656-01 17 59533847 59533847 A T TBX4 5'UTR 0.25 TCGA-44-2656-01 17 59760806 59760806 T C BRIP1 Missense_Mutation p.I1201V 0.28 tolerated_low_confidence(0.27) benign(0.002) TCGA-44-2656-01 17 59962347 59962347 G A INTS2 Silent p.P676P 0.17 TCGA-44-2656-01 17 60754633 60754633 A G MRC2 Missense_Mutation p.Y613C 0.21 tolerated(0.11) possibly_damaging(0.838) TCGA-44-2656-01 17 61950021 61950021 G C CSH2 Silent p.A124A 0.16 TCGA-44-2656-01 17 62018710 62018710 C G SCN4A Silent p.V1644V 0.09 TCGA-44-2656-01 17 62272302 62272302 C A TEX2 Nonsense_Mutation p.E600* 0.32 TCGA-44-2656-01 17 67039769 67039769 C A ABCA9 Missense_Mutation p.V221F 0.16 tolerated(0.35) benign(0.013) TCGA-44-2656-01 17 67151277 67151277 C A ABCA10 Nonsense_Mutation p.E1193* 0.14 TCGA-44-2656-01 17 7462318 7462318 C T TNFSF13 5'UTR 0.10 TCGA-44-2656-01 17 7579470 7579472 CGG GC TP53 Frame_Shift_Del p.P72Rfs*51 0.26 TCGA-44-2656-01 17 76113395 76113395 C A TMC6 Silent p.R744R 0.23 TCGA-44-2656-01 17 79479156 79479156 C A ACTG1 Missense_Mutation p.G46C 0.32 deleterious_low_confidence(0) possibly_damaging(0.557) TCGA-44-2656-01 18 13671873 13671873 A G FAM210A Silent p.Y191Y 0.12 TCGA-44-2656-01 18 14478264 14478264 G T CXADRP3 RNA 0.19 TCGA-44-2656-01 18 2566948 2566948 G A METTL4 Missense_Mutation p.P90S 0.16 tolerated(0.69) benign(0.001) TCGA-44-2656-01 18 2891215 2891215 G T EMILIN2 Nonsense_Mutation p.G364* 0.22 TCGA-44-2656-01 18 29046538 29046538 C A DSG3 Missense_Mutation p.P486H 0.10 deleterious(0.01) probably_damaging(1) TCGA-44-2656-01 18 30091995 30091995 T A WBP11P1 RNA 0.09 TCGA-44-2656-01 18 30091997 30091997 A G WBP11P1 RNA 0.09 TCGA-44-2656-01 18 31323228 31323228 C A ASXL3 Missense_Mutation p.P1139H 0.14 benign(0.01) TCGA-44-2656-01 18 42533086 42533086 A G SETBP1 Missense_Mutation p.K1261E 0.10 deleterious(0.02) probably_damaging(0.994) TCGA-44-2656-01 18 42533120 42533120 G C SETBP1 Missense_Mutation p.S1272T 0.21 tolerated(0.11) benign(0.067) TCGA-44-2656-01 18 48190638 48190638 G A MAPK4 Missense_Mutation p.V104I 0.11 tolerated(0.13) benign(0.004) TCGA-44-2656-01 18 50683801 50683801 G A DCC Missense_Mutation p.R446H 0.04 deleterious(0.01) benign(0.335) TCGA-44-2656-01 18 56203934 56203934 G T ALPK2 Missense_Mutation p.A1162D 0.27 deleterious(0.01) benign(0.142) TCGA-44-2656-01 18 56247124 56247124 G C ALPK2 Missense_Mutation p.P295R 0.20 tolerated(0.35) benign(0.291) TCGA-44-2656-01 18 59942667 59942667 T A KIAA1468 Silent p.T976T 0.17 TCGA-44-2656-01 18 61231212 61231212 T A SERPINB12 Silent p.G168G 0.12 TCGA-44-2656-01 18 65178391 65178391 G A DSEL Missense_Mutation p.A1162V 0.11 deleterious(0.02) probably_damaging(0.972) TCGA-44-2656-01 18 66564585 66564585 G C CCDC102B Missense_Mutation p.D395H 0.12 tolerated(0.12) benign(0.077) TCGA-44-2656-01 18 67718658 67718658 G A RTTN Missense_Mutation p.T1771I 0.05 tolerated(0.13) benign(0.045) TCGA-44-2656-01 18 70423369 70423369 G T NETO1 Silent p.G294G 0.15 TCGA-44-2656-01 18 74617253 74617253 G T ZNF236 Missense_Mutation p.G725C 0.10 deleterious(0) probably_damaging(0.968) TCGA-44-2656-01 18 74672732 74672732 C G ZNF236 Nonsense_Mutation p.Y1778* 0.15 TCGA-44-2656-01 19 10793909 10793909 G C ILF3 Missense_Mutation p.G553R 0.20 tolerated(0.07) possibly_damaging(0.693) TCGA-44-2656-01 19 10822872 10822872 G C QTRT1 Missense_Mutation p.G228R 0.30 deleterious(0) probably_damaging(1) TCGA-44-2656-01 19 11145653 11145653 G T SMARCA4 Nonsense_Mutation p.E1339* 0.28 TCGA-44-2656-01 19 11891055 11891055 A T ZNF441 Missense_Mutation p.K139M 0.08 deleterious(0) probably_damaging(0.984) TCGA-44-2656-01 19 11959650 11959650 T C ZNF439 5'UTR 0.18 TCGA-44-2656-01 19 14153294 14153294 G T IL27RA Silent p.L188L 0.26 TCGA-44-2656-01 19 15759996 15759996 G T CYP4F3 Missense_Mutation p.E184D 0.33 tolerated(0.15) benign(0.008) TCGA-44-2656-01 19 15794437 15794437 G A CYP4F12 Missense_Mutation p.R261H 0.09 tolerated(0.08) benign(0.056) TCGA-44-2656-01 19 1581088 1581088 T A MBD3 Intron 0.22 TCGA-44-2656-01 19 17373540 17373540 C T USHBP1 Missense_Mutation p.G155R 0.26 tolerated(0.09) possibly_damaging(0.73) TCGA-44-2656-01 19 17448878 17448878 C G GTPBP3 Missense_Mutation p.L39V 0.22 tolerated(0.05) probably_damaging(1) TCGA-44-2656-01 19 19337514 19337514 C A NCAN Missense_Mutation p.P431H 0.23 tolerated(0.12) benign(0.338) TCGA-44-2656-01 19 31039347 31039347 C A ZNF536 Missense_Mutation p.L941M 0.04 tolerated(0.29) benign(0.013) TCGA-44-2656-01 19 35836516 35836516 C A CD22 Silent p.A740A 0.38 TCGA-44-2656-01 19 3600658 3600658 C A TBXA2R 5'UTR 0.54 TCGA-44-2656-01 19 36044671 36044671 G T ATP4A Missense_Mutation p.R848S 0.44 deleterious(0) probably_damaging(0.998) TCGA-44-2656-01 19 36276183 36276183 G A ARHGAP33 Missense_Mutation p.R605Q 0.24 deleterious_low_confidence(0.01) benign(0.417) TCGA-44-2656-01 19 38817394 38817394 G T KCNK6 Missense_Mutation p.G162C 0.09 deleterious(0) probably_damaging(0.999) TCGA-44-2656-01 19 3939950 3939950 G T NMRK2 Nonsense_Mutation p.E126* 0.45 TCGA-44-2656-01 19 3960090 3960090 G C DAPK3 Silent p.T265T 0.05 TCGA-44-2656-01 19 39989617 39989617 G T DLL3 Translation_Start_Site p.M1? 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.885) TCGA-44-2656-01 19 40433455 40433455 G T FCGBP Missense_Mutation p.Q272K 0.28 benign(0.027) TCGA-44-2656-01 19 42471882 42471882 C A ATP1A3 Missense_Mutation p.E964D 0.19 deleterious(0.01) probably_damaging(0.986) TCGA-44-2656-01 19 42794026 42794026 A G CIC Missense_Mutation p.I463V 0.28 probably_damaging(0.933) TCGA-44-2656-01 19 43421981 43421981 G A PSG6 5'UTR 0.29 TCGA-44-2656-01 19 43430713 43430713 G A PSG7 Missense_Mutation p.R289C 0.14 deleterious(0.01) possibly_damaging(0.594) TCGA-44-2656-01 19 44891467 44891467 T A ZNF285 Nonsense_Mutation p.K314* 0.11 TCGA-44-2656-01 19 45562609 45562609 G C CLASRP Missense_Mutation p.G233R 0.36 deleterious(0.01) possibly_damaging(0.815) TCGA-44-2656-01 19 48377943 48377943 A T SULT2A1 Missense_Mutation p.V239E 0.33 deleterious(0.03) possibly_damaging(0.771) TCGA-44-2656-01 19 48945446 48945446 T A GRIN2D Missense_Mutation p.I827N 0.28 deleterious(0) probably_damaging(0.951) TCGA-44-2656-01 19 49704042 49704042 G T TRPM4 Missense_Mutation p.V985L 0.40 tolerated(0.14) benign(0.004) TCGA-44-2656-01 19 50099833 50099833 C T PRR12 Silent p.V747V 0.41 TCGA-44-2656-01 19 51327020 51327020 C T KLK1 5'UTR 0.20 TCGA-44-2656-01 19 51412025 51412025 C A KLK4 Missense_Mutation p.Q95H 0.26 deleterious(0.03) benign(0) TCGA-44-2656-01 19 51630332 51630332 G T SIGLEC9 Missense_Mutation p.G265V 0.31 deleterious(0) probably_damaging(0.999) TCGA-44-2656-01 19 51828677 51828677 G T IGLON5 Missense_Mutation p.V157L 0.27 tolerated(0.27) benign(0.061) TCGA-44-2656-01 19 51914385 51914385 G A SIGLEC10 Nonsense_Mutation p.Q688* 0.26 TCGA-44-2656-01 19 51961521 51961521 G T SIGLEC8 Missense_Mutation p.L41M 0.23 deleterious(0.01) probably_damaging(0.915) TCGA-44-2656-01 19 51986279 51986279 G C CEACAM18 Missense_Mutation p.D289H 0.34 deleterious(0.01) probably_damaging(0.965) TCGA-44-2656-01 19 52719903 52719903 A T PPP2R1A Missense_Mutation p.Q372L 0.23 tolerated(1) benign(0.005) TCGA-44-2656-01 19 54219926 54219926 C A MIR521-2 RNA 0.24 TCGA-44-2656-01 19 54618637 54618637 G C TFPT Missense_Mutation p.Q5E 0.10 deleterious_low_confidence(0.01) benign(0.373) TCGA-44-2656-01 19 55146212 55146212 C A LILRB1 Nonsense_Mutation p.S495* 0.28 TCGA-44-2656-01 19 55497607 55497607 G T NLRP2 Missense_Mutation p.G764C 0.23 deleterious(0) probably_damaging(0.994) TCGA-44-2656-01 19 56369376 56369376 C A NLRP4 Missense_Mutation p.S206Y 0.34 deleterious(0) probably_damaging(0.967) TCGA-44-2656-01 19 56370026 56370026 G T NLRP4 Missense_Mutation p.G423W 0.33 deleterious(0) probably_damaging(1) TCGA-44-2656-01 19 58600081 58600081 C A ZSCAN18 Missense_Mutation p.G232V 0.21 tolerated(0.32) benign(0.014) TCGA-44-2656-01 19 9047921 9047921 G T MUC16 Nonsense_Mutation p.S11237* 0.29 TCGA-44-2656-01 1 100336081 100336081 G T AGL Missense_Mutation p.G264W 0.17 deleterious(0) probably_damaging(1) TCGA-44-2656-01 1 103347308 103347308 G T COL11A1 Nonsense_Mutation p.S1662* 0.15 TCGA-44-2656-01 1 109241225 109241225 G T PRPF38B Splice_Site p.X187_splice 0.37 TCGA-44-2656-01 1 110168960 110168960 G T AMPD2 Nonsense_Mutation p.E202* 0.12 TCGA-44-2656-01 1 110257934 110257934 C A GSTM5 Intron 0.18 TCGA-44-2656-01 1 111770280 111770280 G T CHI3L2 Splice_Site 0.17 TCGA-44-2656-01 1 113266601 113266601 C T FAM19A3 Silent p.D100D 0.09 TCGA-44-2656-01 1 11574545 11574545 G A PTCHD2 Missense_Mutation p.C472Y 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-44-2656-01 1 11594437 11594437 G T PTCHD2 Splice_Site p.X1126_splice 0.25 TCGA-44-2656-01 1 117509740 117509740 T C PTGFRN Missense_Mutation p.L616P 0.16 tolerated(0.05) probably_damaging(1) TCGA-44-2656-01 1 119619185 119619185 T C WARS2 Missense_Mutation p.I46V 0.14 tolerated(0.38) benign(0.014) TCGA-44-2656-01 1 12157231 12157231 G T TNFRSF8 Silent p.L75L 0.30 TCGA-44-2656-01 1 13474988 13474988 T C PRAMEF18 Missense_Mutation p.T381A 0.19 deleterious(0.04) possibly_damaging(0.874) TCGA-44-2656-01 1 142713689 142713689 C A RP11-417J8.6 RNA 0.11 TCGA-44-2656-01 1 149858222 149858222 A G HIST2H2BE 5'UTR 0.17 TCGA-44-2656-01 1 149877220 149877220 C T SV2A Intron 0.24 TCGA-44-2656-01 1 151204252 151204252 G T PIP5K1A Missense_Mutation p.V115L 0.22 deleterious(0.01) benign(0.027) TCGA-44-2656-01 1 151288658 151288658 C A PI4KB Missense_Mutation p.E112D 0.21 tolerated_low_confidence(0.27) benign(0.039) TCGA-44-2656-01 1 152285480 152285480 G C FLG Missense_Mutation p.Q628E 0.32 benign(0.125) TCGA-44-2656-01 1 152552354 152552354 T A LCE3D Missense_Mutation p.K20M 0.23 deleterious_low_confidence(0) unknown(0) TCGA-44-2656-01 1 152552359 152552359 T G LCE3D Silent p.S18S 0.23 TCGA-44-2656-01 1 152552407 152552407 G T LCE3D Silent p.S2S 0.18 TCGA-44-2656-01 1 152681629 152681629 C T LCE4A Silent p.P26P 0.18 TCGA-44-2656-01 1 153005016 153005016 C A SPRR1B Nonsense_Mutation p.C65* 0.20 TCGA-44-2656-01 1 153066043 153066043 G T SPRR2E Missense_Mutation p.P62H 0.21 tolerated_low_confidence(0.27) unknown(0) TCGA-44-2656-01 1 153177368 153177368 C A LELP1 Missense_Mutation p.P62H 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-44-2656-01 1 156721086 156721086 G A HDGF Intron 0.18 TCGA-44-2656-01 1 156810842 156810842 G T INSRR Missense_Mutation p.F1239L 0.29 deleterious(0) probably_damaging(0.998) TCGA-44-2656-01 1 157556176 157556176 A T FCRL4 Missense_Mutation p.L306Q 0.25 deleterious(0) probably_damaging(1) TCGA-44-2656-01 1 157803126 157803126 T A CD5L Nonsense_Mutation p.K299* 0.30 TCGA-44-2656-01 1 158323730 158323730 T A CD1E 5'UTR 0.27 TCGA-44-2656-01 1 158670253 158670253 T A OR6K2 Missense_Mutation p.S64C 0.29 tolerated(0.06) benign(0.152) TCGA-44-2656-01 1 158687393 158687393 G T OR6K3 Silent p.P171P 0.27 TCGA-44-2656-01 1 158815548 158815548 C A MNDA Missense_Mutation p.H248N 0.20 deleterious(0.01) possibly_damaging(0.571) TCGA-44-2656-01 1 160808305 160808305 G T CD244 Missense_Mutation p.T262N 0.22 tolerated(0.18) benign(0.405) TCGA-44-2656-01 1 160811267 160811267 C A CD244 Nonsense_Mutation p.E135* 0.21 TCGA-44-2656-01 1 16096939 16096939 C T FBLIM1 Nonsense_Mutation p.R193* 0.18 TCGA-44-2656-01 1 161680653 161680653 G A FCRLA Silent p.Q84Q 0.32 TCGA-44-2656-01 1 161680697 161680697 C A FCRLA Missense_Mutation p.S99Y 0.18 deleterious(0.04) probably_damaging(0.997) TCGA-44-2656-01 1 161680698 161680698 C A FCRLA Silent p.S99S 0.16 TCGA-44-2656-01 1 162039935 162039935 G T NOS1AP 5'UTR 0.16 TCGA-44-2656-01 1 162336927 162336927 G T RP11-565P22.6 Missense_Mutation p.E83D 0.17 tolerated(0.09) benign(0.178) TCGA-44-2656-01 1 163298635 163298635 G T NUF2 Splice_Site p.X92_splice 0.23 TCGA-44-2656-01 1 16370982 16370982 G T CLCNKB Intron 0.21 TCGA-44-2656-01 1 17313590 17313590 C A ATP13A2 Missense_Mutation p.V1012L 0.25 tolerated(0.65) benign(0.011) TCGA-44-2656-01 1 173735426 173735426 G T KLHL20 Missense_Mutation p.E431D 0.26 deleterious(0.01) probably_damaging(0.969) TCGA-44-2656-01 1 176525673 176525673 C G PAPPA2 Missense_Mutation p.P72R 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-2656-01 1 17765004 17765004 T A RCC2 Missense_Mutation p.R3W 0.39 deleterious_low_confidence(0) unknown(0) TCGA-44-2656-01 1 178854254 178854254 G C RALGPS2 Silent p.V316V 0.31 TCGA-44-2656-01 1 178854255 178854255 G T RALGPS2 Missense_Mutation p.A317S 0.31 tolerated(0.33) benign(0.002) TCGA-44-2656-01 1 180080331 180080331 G T CEP350 3'UTR 0.08 TCGA-44-2656-01 1 181689959 181689959 A C CACNA1E Missense_Mutation p.T642P 0.21 deleterious(0) possibly_damaging(0.803) TCGA-44-2656-01 1 181759585 181759585 G T CACNA1E Missense_Mutation p.G1931C 0.19 deleterious(0.01) benign(0.175) TCGA-44-2656-01 1 183090909 183090909 G T LAMC1 Missense_Mutation p.G681V 0.28 deleterious(0) probably_damaging(1) TCGA-44-2656-01 1 183617876 183617876 G A APOBEC4 Missense_Mutation p.T14I 0.14 deleterious(0) probably_damaging(0.998) TCGA-44-2656-01 1 185892747 185892747 A G HMCN1 Missense_Mutation p.Q416R 0.33 possibly_damaging(0.775) TCGA-44-2656-01 1 190067423 190067423 C G BRINP3 Missense_Mutation p.D676H 0.21 deleterious(0) probably_damaging(0.998) TCGA-44-2656-01 1 190250721 190250721 C A BRINP3 Silent p.G132G 0.22 TCGA-44-2656-01 1 193111176 193111176 A G CDC73 Missense_Mutation p.I237V 0.07 tolerated(0.55) benign(0.098) TCGA-44-2656-01 1 196871741 196871741 C A CFHR4 Nonsense_Mutation p.C83* 0.33 TCGA-44-2656-01 1 196967432 196967432 C A CFHR5 Missense_Mutation p.T382K 0.14 tolerated(0.66) benign(0.005) TCGA-44-2656-01 1 197070066 197070066 T C ASPM Missense_Mutation p.Q2772R 0.11 tolerated(0.07) benign(0.009) TCGA-44-2656-01 1 197115630 197115630 G C ASPM 5'UTR 0.19 TCGA-44-2656-01 1 197411194 197411194 G T CRB1 Intron 0.22 TCGA-44-2656-01 1 197890482 197890482 C A LHX9 Silent p.A142A 0.24 TCGA-44-2656-01 1 202398051 202398051 G T PPP1R12B Missense_Mutation p.Q305H 0.13 deleterious(0) probably_damaging(0.977) TCGA-44-2656-01 1 203452395 203452395 C A PRELP Missense_Mutation p.P28H 0.30 deleterious_low_confidence(0.01) benign(0.348) TCGA-44-2656-01 1 205030382 205030382 C A CNTN2 Silent p.P269P 0.17 TCGA-44-2656-01 1 205042265 205042265 C A CNTN2 Missense_Mutation p.P972T 0.16 tolerated(0.05) benign(0.01) TCGA-44-2656-01 1 206611329 206611329 C T SRGAP2 Missense_Mutation p.A464V 0.16 tolerated(1) benign(0.124) TCGA-44-2656-01 1 206634713 206634713 G T SRGAP2 Missense_Mutation p.G969V 0.31 deleterious_low_confidence(0.04) benign(0.294) TCGA-44-2656-01 1 21074085 21074085 C A HP1BP3 Missense_Mutation p.G402V 0.13 deleterious(0) probably_damaging(1) TCGA-44-2656-01 1 211256166 211256166 C A KCNH1 Missense_Mutation p.V172L 0.27 tolerated(0.68) benign(0.059) TCGA-44-2656-01 1 215759874 215759874 G C KCTD3 Silent p.T221T 0.19 TCGA-44-2656-01 1 216051129 216051129 C T USH2A Silent p.Q2884Q 0.29 TCGA-44-2656-01 1 216143975 216143975 C A USH2A Missense_Mutation p.G2317C 0.17 probably_damaging(0.999) TCGA-44-2656-01 1 216496873 216496873 G T USH2A Missense_Mutation p.T498N 0.28 benign(0.158) TCGA-44-2656-01 1 220406172 220406172 C - RAB3GAP2 Frame_Shift_Del p.G50Efs*41 0.14 TCGA-44-2656-01 1 220752848 220752848 G A MARK1 Silent p.K68K 0.07 TCGA-44-2656-01 1 226413314 226413314 A - MIXL1 Frame_Shift_Del p.T168Rfs*4 0.25 TCGA-44-2656-01 1 22817990 22817990 A G ZBTB40 Silent p.L265L 0.27 TCGA-44-2656-01 1 228248008 228248008 C T WNT3A 3'UTR 0.05 TCGA-44-2656-01 1 228464950 228464950 G C OBSCN Silent p.A2605A 0.41 TCGA-44-2656-01 1 228523918 228523918 C A OBSCN Nonsense_Mutation p.S6452* 0.17 TCGA-44-2656-01 1 22986096 22986096 C A C1QB Silent p.P49P 0.17 TCGA-44-2656-01 1 235973688 235973688 T C LYST Missense_Mutation p.R144G 0.06 tolerated_low_confidence(0.07) probably_damaging(0.985) TCGA-44-2656-01 1 236195859 236195859 G T NID1 Missense_Mutation p.S460Y 0.31 deleterious(0) probably_damaging(1) TCGA-44-2656-01 1 236201439 236201439 C A NID1 Missense_Mutation p.G417V 0.18 deleterious(0.01) probably_damaging(0.988) TCGA-44-2656-01 1 237729943 237729943 G A RYR2 Silent p.K1097K 0.26 TCGA-44-2656-01 1 237955446 237955446 G T RYR2 Silent p.T4535T 0.22 TCGA-44-2656-01 1 238051764 238051764 C A ZP4 Silent p.R149R 0.12 TCGA-44-2656-01 1 24388533 24388533 G A MYOM3 Silent p.H1279H 0.15 TCGA-44-2656-01 1 24421441 24421441 A T MYOM3 Missense_Mutation p.L277Q 0.10 deleterious(0) probably_damaging(0.993) TCGA-44-2656-01 1 247587802 247587802 G T NLRP3 Missense_Mutation p.V353L 0.31 tolerated(0.06) possibly_damaging(0.547) TCGA-44-2656-01 1 247614463 247614463 C A OR2B11 Missense_Mutation p.Q274H 0.19 deleterious(0.02) probably_damaging(0.996) TCGA-44-2656-01 1 247695356 247695356 C A OR2C3 Missense_Mutation p.G153V 0.21 deleterious(0) probably_damaging(1) TCGA-44-2656-01 1 247695358 247695358 C T OR2C3 Silent p.G152G 0.22 TCGA-44-2656-01 1 247752128 247752128 T C OR2G2 Missense_Mutation p.I156T 0.29 deleterious(0.02) benign(0.158) TCGA-44-2656-01 1 247769640 247769640 C A OR2G3 Missense_Mutation p.F251L 0.11 deleterious(0.01) probably_damaging(1) TCGA-44-2656-01 1 24785406 24785406 G T NIPAL3 Missense_Mutation p.D268Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-44-2656-01 1 247978554 247978554 C A OR14A16 Missense_Mutation p.G160C 0.19 tolerated(0.06) benign(0.359) TCGA-44-2656-01 1 248059311 248059311 C G OR2W3 Missense_Mutation p.C141W 0.15 deleterious(0) probably_damaging(0.998) TCGA-44-2656-01 1 248084416 248084416 G T OR2T8 Missense_Mutation p.V33F 0.16 tolerated(1) benign(0.006) TCGA-44-2656-01 1 248224532 248224532 G A OR2L3 Missense_Mutation p.M183I 0.14 deleterious(0.04) benign(0.084) TCGA-44-2656-01 1 248487614 248487614 A T OR2M7 Nonsense_Mutation p.L86* 0.30 TCGA-44-2656-01 1 248487866 248487866 G T OR2M7 Missense_Mutation p.A2E 0.13 tolerated(0.64) benign(0.002) TCGA-44-2656-01 1 248551410 248551410 G T OR2T6 Silent p.P167P 0.32 TCGA-44-2656-01 1 248569631 248569631 C G OR2T1 Silent p.L112L 0.05 TCGA-44-2656-01 1 248737445 248737445 T A OR2T34 Missense_Mutation p.Y205F 0.18 tolerated(0.2) probably_damaging(0.927) TCGA-44-2656-01 1 248756948 248756948 C G OR2T10 Missense_Mutation p.W41S 0.45 tolerated(0.12) benign(0) TCGA-44-2656-01 1 2537711 2537711 C T MMEL1 Silent p.Q242Q 0.07 TCGA-44-2656-01 1 26688465 26688465 G C ZNF683 Missense_Mutation p.R398G 0.23 deleterious(0) probably_damaging(0.951) TCGA-44-2656-01 1 28476668 28476668 C A PTAFR Missense_Mutation p.D289Y 0.36 deleterious(0) probably_damaging(1) TCGA-44-2656-01 1 3328631 3328631 G T PRDM16 Missense_Mutation p.D624Y 0.12 deleterious(0) probably_damaging(0.992) TCGA-44-2656-01 1 34006151 34006151 C A CSMD2 Missense_Mutation p.W3058L 0.12 deleterious(0.01) probably_damaging(1) TCGA-44-2656-01 1 34209016 34209016 C A CSMD2 Missense_Mutation p.A640S 0.10 tolerated(0.8) benign(0.074) TCGA-44-2656-01 1 35351361 35351361 G A DLGAP3 Silent p.I544I 0.27 TCGA-44-2656-01 1 36437711 36437711 G T AGO3 Missense_Mutation p.W133C 0.14 deleterious(0) possibly_damaging(0.497) TCGA-44-2656-01 1 38005774 38005774 C A SNIP1 Missense_Mutation p.A304S 0.12 deleterious(0) probably_damaging(0.999) TCGA-44-2656-01 1 43638557 43638557 C A WDR65 Missense_Mutation p.Q45K 0.18 deleterious(0.04) probably_damaging(0.915) TCGA-44-2656-01 1 43909130 43909130 T C SZT2 Silent p.S2812S 0.12 TCGA-44-2656-01 1 44489925 44489926 - C SLC6A9 Frame_Shift_Ins p.M9Dfs*141 0.10 TCGA-44-2656-01 1 44820666 44820666 C T ERI3 Silent p.G11G 0.27 TCGA-44-2656-01 1 52486661 52486661 G A TXNDC12 Nonsense_Mutation p.Q155* 0.12 TCGA-44-2656-01 1 57409484 57409484 G T C8B Missense_Mutation p.N373K 0.12 tolerated(0.39) benign(0.001) TCGA-44-2656-01 1 6173020 6173020 G A CHD5 Silent p.L1651L 0.09 TCGA-44-2656-01 1 6479306 6479306 G A HES2 Missense_Mutation p.A79V 0.34 tolerated(0.14) benign(0.04) TCGA-44-2656-01 1 6639557 6639557 C A TAS1R1 Nonsense_Mutation p.Y813* 0.17 TCGA-44-2656-01 1 67266839 67266839 G T INSL5 Missense_Mutation p.S22R 0.31 tolerated(0.06) benign(0.042) TCGA-44-2656-01 1 70504811 70504811 A G LRRC7 Missense_Mutation p.K1064E 0.35 deleterious(0.01) probably_damaging(0.991) TCGA-44-2656-01 1 72400910 72400910 C A NEGR1 Silent p.V87V 0.18 TCGA-44-2656-01 1 75097613 75097613 C G C1orf173 Splice_Site p.X202_splice 0.06 TCGA-44-2656-01 1 78959150 78959150 G C PTGFR Missense_Mutation p.R241T 0.32 tolerated(0.31) benign(0.194) TCGA-44-2656-01 1 79402013 79402013 A T ELTD1 Missense_Mutation p.F282I 0.13 tolerated(0.06) benign(0.003) TCGA-44-2656-01 1 8399663 8399663 G A SLC45A1 Missense_Mutation p.V629M 0.05 deleterious(0) possibly_damaging(0.769) TCGA-44-2656-01 1 92174229 92174229 C A TGFBR3 Nonsense_Mutation p.E760* 0.31 TCGA-44-2656-01 1 94574149 94574149 G T ABCA4 Missense_Mutation p.H142Q 0.25 tolerated(0.41) benign(0.09) TCGA-44-2656-01 1 99767413 99767413 A C LPPR4 Missense_Mutation p.Y309S 0.09 deleterious(0.02) probably_damaging(0.979) TCGA-44-2656-01 20 126348 126348 G T DEFB126 3'UTR 0.30 TCGA-44-2656-01 20 20349020 20349020 G A INSM1 Missense_Mutation p.G37R 0.33 tolerated(0.24) possibly_damaging(0.84) TCGA-44-2656-01 20 20349021 20349021 G T INSM1 Missense_Mutation p.G37V 0.38 tolerated(0.31) possibly_damaging(0.766) TCGA-44-2656-01 20 2840774 2840774 G T VPS16 Missense_Mutation p.G73C 0.25 deleterious(0) probably_damaging(1) TCGA-44-2656-01 20 30454916 30454916 T A DUSP15 Silent p.T32T 0.62 TCGA-44-2656-01 20 31873972 31873972 C T BPIFB1 Silent p.L31L 0.17 TCGA-44-2656-01 20 33876672 33876672 G T FAM83C Nonsense_Mutation p.Y201* 0.31 TCGA-44-2656-01 20 35540928 35540928 G A SAMHD1 Missense_Mutation p.H364Y 0.44 tolerated(0.19) benign(0.005) TCGA-44-2656-01 20 36993349 36993349 G T LBP Silent p.T288T 0.29 TCGA-44-2656-01 20 36993396 36993396 C A LBP Missense_Mutation p.T304K 0.25 tolerated(0.15) possibly_damaging(0.627) TCGA-44-2656-01 20 44637627 44637627 C T MMP9 Missense_Mutation p.P21L 0.34 tolerated(0.22) benign(0.008) TCGA-44-2656-01 20 44670048 44670048 C T SLC12A5 Missense_Mutation p.T335M 0.09 deleterious(0) probably_damaging(0.978) TCGA-44-2656-01 20 4770300 4770300 C A RASSF2 Missense_Mutation p.R194L 0.26 deleterious(0) probably_damaging(1) TCGA-44-2656-01 20 52591957 52591957 C G BCAS1 Missense_Mutation p.D385H 0.08 deleterious(0) probably_damaging(0.922) TCGA-44-2656-01 20 52612502 52612502 C A BCAS1 Missense_Mutation p.A271S 0.28 tolerated(0.22) benign(0.082) TCGA-44-2656-01 20 55748235 55748235 C A BMP7 Intron 0.29 TCGA-44-2656-01 20 57767196 57767196 G - ZNF831 Frame_Shift_Del p.E376Rfs*158 0.11 TCGA-44-2656-01 20 57767249 57767249 C A ZNF831 Missense_Mutation p.A392E 0.32 tolerated(1) benign(0.002) TCGA-44-2656-01 20 57829002 57829002 C G ZNF831 Missense_Mutation p.T1413S 0.15 tolerated(0.07) benign(0.132) TCGA-44-2656-01 20 57829823 57829823 G T ZNF831 3'UTR 0.16 TCGA-44-2656-01 20 57876663 57876663 C A EDN3 Missense_Mutation p.A84E 0.13 tolerated(0.4) benign(0.002) TCGA-44-2656-01 20 58348406 58348406 C T PHACTR3 Missense_Mutation p.P275L 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-44-2656-01 20 61460982 61460982 C A COL9A3 Silent p.G352G 0.24 TCGA-44-2656-01 20 61511318 61511318 G T DIDO1 Missense_Mutation p.P1997H 0.04 probably_damaging(0.999) TCGA-44-2656-01 20 61588903 61588903 T C SLC17A9 Missense_Mutation p.F123S 0.08 tolerated(0.25) benign(0.023) TCGA-44-2656-01 20 62312042 62312042 C T RTEL1 Silent p.A411A 0.13 TCGA-44-2656-01 20 62697832 62697832 G T TCEA2 Nonsense_Mutation p.G26* 0.08 TCGA-44-2656-01 20 8770893 8770893 G T PLCB1 Silent p.L1136L 0.28 TCGA-44-2656-01 20 8770894 8770894 G T PLCB1 Missense_Mutation p.D1137Y 0.29 deleterious(0) probably_damaging(0.968) TCGA-44-2656-01 20 9624772 9624772 C A PAK7 Splice_Site p.X68_splice 0.12 TCGA-44-2656-01 21 37833580 37833580 C A CLDN14 Missense_Mutation p.W138C 0.17 deleterious(0) probably_damaging(1) TCGA-44-2656-01 21 39775598 39775598 T G ERG Missense_Mutation p.Q148P 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-44-2656-01 21 39947641 39947641 G A ERG 5'UTR 0.08 TCGA-44-2656-01 21 41137527 41137527 G T IGSF5 Missense_Mutation p.A56S 0.27 deleterious(0) probably_damaging(0.995) TCGA-44-2656-01 21 41725556 41725556 C T DSCAM Missense_Mutation p.R257H 0.09 tolerated(0.2) benign(0.176) TCGA-44-2656-01 21 43299505 43299505 G T PRDM15 5'UTR 0.58 TCGA-44-2656-01 21 43412161 43412161 G T ZBTB21 Missense_Mutation p.L682I 0.09 tolerated(0.31) probably_damaging(0.967) TCGA-44-2656-01 21 43524089 43524089 G T UMODL1 Missense_Mutation p.V471L 0.26 tolerated(0.12) benign(0.436) TCGA-44-2656-01 21 46032564 46032564 G T KRTAP10-8 Missense_Mutation p.A183S 0.29 tolerated(0.31) unknown(0) TCGA-44-2656-01 21 47556896 47556896 C T FTCD Intron 0.16 TCGA-44-2656-01 22 17071902 17071902 C G CCT8L2 Missense_Mutation p.Q513H 0.23 deleterious(0.04) possibly_damaging(0.905) TCGA-44-2656-01 22 18301457 18301457 C A MICAL3 Missense_Mutation p.V1324L 0.25 benign(0.256) TCGA-44-2656-01 22 26761403 26761403 C A SEZ6L Silent p.R889R 0.26 TCGA-44-2656-01 22 32550243 32550243 G T C22orf42 Missense_Mutation p.L99I 0.21 tolerated_low_confidence(0.51) possibly_damaging(0.567) TCGA-44-2656-01 22 37499653 37499653 C G TMPRSS6 5'UTR 0.13 TCGA-44-2656-01 22 41657531 41657531 C A RANGAP1 Missense_Mutation p.K178N 0.27 tolerated(0.06) benign(0.389) TCGA-44-2656-01 22 42981234 42981234 C T POLDIP3 3'UTR 0.09 TCGA-44-2656-01 22 45598869 45598869 A C KIAA0930 Splice_Site p.X289_splice 0.30 TCGA-44-2656-01 22 45802673 45802673 T A SMC1B Silent p.I124I 0.32 TCGA-44-2656-01 22 50277734 50277734 G A ZBED4 Missense_Mutation p.E142K 0.31 deleterious(0.02) probably_damaging(1) TCGA-44-2656-01 22 51143400 51143400 G T SHANK3 Silent p.G651G 0.33 TCGA-44-2656-01 2 108477308 108477308 G T RGPD4 Missense_Mutation p.K615N 0.11 deleterious(0) possibly_damaging(0.788) TCGA-44-2656-01 2 108604640 108604640 C A SLC5A7 Missense_Mutation p.A10D 0.20 deleterious(0) probably_damaging(0.923) TCGA-44-2656-01 2 113089158 113089158 C G ZC3H6 Missense_Mutation p.P888R 0.39 deleterious(0.04) probably_damaging(0.999) TCGA-44-2656-01 2 114257955 114257955 A T FOXD4L1 Silent p.G374G 0.10 TCGA-44-2656-01 2 122106236 122106236 T A CLASP1 Missense_Mutation p.Q1422L 0.32 tolerated(0.23) probably_damaging(0.998) TCGA-44-2656-01 2 125555897 125555897 G A CNTNAP5 Missense_Mutation p.G1072R 0.30 deleterious(0) probably_damaging(0.958) TCGA-44-2656-01 2 128183674 128183674 T A PROC Nonsense_Mutation p.C183* 0.27 TCGA-44-2656-01 2 12880889 12880889 T A TRIB2 Missense_Mutation p.M334K 0.14 tolerated(0.87) benign(0.017) TCGA-44-2656-01 2 12880890 12880890 G T TRIB2 Missense_Mutation p.M334I 0.14 tolerated(0.2) benign(0.001) TCGA-44-2656-01 2 133174584 133174584 T A GPR39 5'UTR 0.09 TCGA-44-2656-01 2 136393555 136393555 A T R3HDM1 Missense_Mutation p.K265I 0.29 deleterious(0) probably_damaging(0.992) TCGA-44-2656-01 2 148683685 148683686 - A ACVR2A Frame_Shift_Ins p.R438Efs*19 0.29 TCGA-44-2656-01 2 152512820 152512820 G A NEB Silent p.H2114H 0.24 TCGA-44-2656-01 2 15417226 15417226 C A NBAS Splice_Site p.X1713_splice 0.24 TCGA-44-2656-01 2 1544403 1544403 G A TPO Missense_Mutation p.E886K 0.29 tolerated_low_confidence(0.06) benign(0.084) TCGA-44-2656-01 2 15468435 15468435 C A NBAS Missense_Mutation p.G1450V 0.10 deleterious(0.01) benign(0.319) TCGA-44-2656-01 2 15701451 15701451 G A NBAS 5'UTR 0.10 TCGA-44-2656-01 2 1653089 1653089 C A PXDN Missense_Mutation p.W821C 0.15 deleterious(0) probably_damaging(1) TCGA-44-2656-01 2 166896013 166896013 C A SCN1A Missense_Mutation p.G837C 0.19 tolerated(0.22) probably_damaging(0.987) TCGA-44-2656-01 2 167133545 167133545 T A SCN9A Missense_Mutation p.Q930L 0.20 deleterious(0.01) probably_damaging(0.964) TCGA-44-2656-01 2 17836616 17836616 C A VSNL1 Missense_Mutation p.S177R 0.16 tolerated(0.48) possibly_damaging(0.547) TCGA-44-2656-01 2 179259071 179259071 G T OSBPL6 Missense_Mutation p.A894S 0.30 tolerated(0.11) benign(0.02) TCGA-44-2656-01 2 179592523 179592523 C T TTN Silent p.K6594K 0.32 TCGA-44-2656-01 2 183902858 183902858 C A NCKAP1 5'UTR 0.45 TCGA-44-2656-01 2 183989185 183989185 A T NUP35 5'UTR 0.25 TCGA-44-2656-01 2 186672293 186672293 C A FSIP2 Missense_Mutation p.S6176Y 0.32 probably_damaging(0.984) TCGA-44-2656-01 2 187626258 187626258 G T FAM171B Missense_Mutation p.V397F 0.30 tolerated(0.05) possibly_damaging(0.609) TCGA-44-2656-01 2 189849689 189849689 G T COL3A1 Splice_Site p.X94_splice 0.33 TCGA-44-2656-01 2 189872628 189872628 G A COL3A1 Silent p.Q1127Q 0.26 TCGA-44-2656-01 2 189904126 189904126 G A COL5A2 Missense_Mutation p.P1266L 0.38 unknown(0) TCGA-44-2656-01 2 20133236 20133237 CA - WDR35 Nonsense_Mutation p.C872* 0.18 TCGA-44-2656-01 2 20482749 20482749 C T PUM2 Missense_Mutation p.G560D 0.12 deleterious(0) probably_damaging(1) TCGA-44-2656-01 2 21239499 21239499 G T APOB Silent p.T1048T 0.09 TCGA-44-2656-01 2 21245902 21245902 G T APOB Missense_Mutation p.L873M 0.12 probably_damaging(0.999) TCGA-44-2656-01 2 216923646 216923646 G A PECR Missense_Mutation p.P160S 0.24 tolerated(0.73) benign(0.001) TCGA-44-2656-01 2 219492945 219492945 A T PLCD4 Silent p.G322G 0.06 TCGA-44-2656-01 2 220136384 220136384 T C TUBA4B RNA 0.08 TCGA-44-2656-01 2 220353298 220353298 G T SPEG Missense_Mutation p.R2646L 0.31 probably_damaging(0.999) TCGA-44-2656-01 2 220404338 220404338 C G CHPF Missense_Mutation p.E699Q 0.14 tolerated(0.07) possibly_damaging(0.593) TCGA-44-2656-01 2 220496825 220496825 G A SLC4A3 Missense_Mutation p.R343Q 0.32 deleterious(0.04) benign(0.219) TCGA-44-2656-01 2 224463262 224463262 C A SCG2 Nonsense_Mutation p.G247* 0.31 TCGA-44-2656-01 2 230341871 230341871 A G DNER Missense_Mutation p.C416R 0.32 deleterious(0) probably_damaging(0.999) TCGA-44-2656-01 2 232262811 232262811 G C B3GNT7 Silent p.P127P 0.31 TCGA-44-2656-01 2 232393103 232393103 C T NMUR1 Missense_Mutation p.R210Q 0.61 tolerated(0.52) probably_damaging(0.971) TCGA-44-2656-01 2 238726701 238726701 C T RBM44 Missense_Mutation p.S381F 0.26 tolerated(0.05) benign(0.045) TCGA-44-2656-01 2 240066294 240066294 G A HDAC4 Missense_Mutation p.P284S 0.26 tolerated(0.33) benign(0.034) TCGA-44-2656-01 2 240969840 240969840 C G OR6B2 Missense_Mutation p.G3R 0.20 tolerated(0.3) benign(0.005) TCGA-44-2656-01 2 24426444 24426444 C A ITSN2 3'UTR 0.27 TCGA-44-2656-01 2 26696880 26696880 C A OTOF Silent p.V1129V 0.28 TCGA-44-2656-01 2 26818175 26818175 A T CIB4 Missense_Mutation p.F66Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-44-2656-01 2 27481082 27481082 C T SLC30A3 Nonsense_Mutation p.W124* 0.28 TCGA-44-2656-01 2 28855858 28855858 C A PLB1 Missense_Mutation p.F1350L 0.13 tolerated(0.12) possibly_damaging(0.9) TCGA-44-2656-01 2 28855888 28855888 C T PLB1 Silent p.I1360I 0.15 TCGA-44-2656-01 2 29551271 29551271 C A ALK Missense_Mutation p.Q453H 0.16 deleterious(0) possibly_damaging(0.815) TCGA-44-2656-01 2 32477681 32477681 G T NLRC4 Silent p.I23I 0.27 TCGA-44-2656-01 2 32678942 32678950 AAGTTGAAC - BIRC6 In_Frame_Del p.E1562_P1565delinsA 0.11 TCGA-44-2656-01 2 33359928 33359928 G T LTBP1 Missense_Mutation p.G368C 0.33 deleterious(0) probably_damaging(0.997) TCGA-44-2656-01 2 44145419 44145419 C G LRPPRC Missense_Mutation p.Q1005H 0.29 deleterious(0) probably_damaging(0.99) TCGA-44-2656-01 2 48941147 48941147 T G LHCGR Missense_Mutation p.N195H 0.11 deleterious(0) probably_damaging(0.99) TCGA-44-2656-01 2 54893182 54893182 G T SPTBN1 Missense_Mutation p.V2264L 0.13 deleterious(0.04) possibly_damaging(0.512) TCGA-44-2656-01 2 61505418 61505418 C A USP34 Missense_Mutation p.R1772M 0.15 deleterious(0) probably_damaging(0.929) TCGA-44-2656-01 2 64335371 64335371 T A PELI1 Intron 0.10 TCGA-44-2656-01 2 64863699 64863699 C A SERTAD2 Missense_Mutation p.A103S 0.08 deleterious(0.05) benign(0.013) TCGA-44-2656-01 2 69049651 69049651 C A ARHGAP25 Missense_Mutation p.S460R 0.18 tolerated(0.22) benign(0.045) TCGA-44-2656-01 2 71160340 71160340 C T VAX2 3'UTR 0.14 TCGA-44-2656-01 2 73899571 73899571 A G ALMS1P RNA 0.15 TCGA-44-2656-01 2 74043181 74043181 C A C2orf78 Missense_Mutation p.Q611K 0.26 tolerated(0.5) possibly_damaging(0.676) TCGA-44-2656-01 2 77745831 77745831 G A LRRTM4 Silent p.T388T 0.21 TCGA-44-2656-01 2 79364020 79364020 C A REG1P RNA 0.12 TCGA-44-2656-01 2 79384784 79384784 C A REG3A Missense_Mutation p.S125I 0.21 tolerated(0.15) benign(0.276) TCGA-44-2656-01 2 80530120 80530120 C A LRRTM1 Silent p.V275V 0.29 TCGA-44-2656-01 2 80816575 80816575 G T CTNNA2 Missense_Mutation p.M718I 0.23 deleterious(0) possibly_damaging(0.69) TCGA-44-2656-01 2 86718115 86718115 C T KDM3A Nonsense_Mutation p.Q1229* 0.14 TCGA-44-2656-01 2 88422658 88422658 C T FABP1 Intron 0.26 TCGA-44-2656-01 2 89196831 89196831 C G IGKV5-2 Silent p.L7L 0.35 TCGA-44-2656-01 2 89266036 89266036 G T IGKV1-6 Silent p.S32S 0.28 TCGA-44-2656-01 2 89568195 89568195 A T IGKV1-33 Missense_Mutation p.L13Q 0.07 deleterious(0) probably_damaging(0.996) TCGA-44-2656-01 2 89976490 89976490 C A IGKV2D-30 3'Flank 0.25 TCGA-44-2656-01 2 90044273 90044273 C A IGKV2D-24 Missense_Mutation p.P65Q 0.15 deleterious(0.02) benign(0.274) TCGA-44-2656-01 2 90154121 90154121 G T IGKV3D-15 Missense_Mutation p.G70C 0.26 tolerated(0.16) possibly_damaging(0.744) TCGA-44-2656-01 2 95481247 95481247 T C ANKRD20A8P RNA 0.05 TCGA-44-2656-01 2 95945675 95945675 G T PROM2 Missense_Mutation p.G453C 0.09 deleterious(0) probably_damaging(1) TCGA-44-2656-01 2 96801117 96801117 G C ASTL Missense_Mutation p.F72L 0.10 tolerated(0.16) possibly_damaging(0.781) TCGA-44-2656-01 2 96858109 96858109 C G STARD7 Missense_Mutation p.E281Q 0.28 deleterious(0) probably_damaging(0.977) TCGA-44-2656-01 2 97008585 97008585 A G NCAPH Missense_Mutation p.K152R 0.10 deleterious(0.01) possibly_damaging(0.897) TCGA-44-2656-01 2 99804653 99804653 G T MRPL30 Missense_Mutation p.G22V 0.17 tolerated(0.34) benign(0.004) TCGA-44-2656-01 3 10354321 10354321 C G SEC13 Missense_Mutation p.W86C 0.29 deleterious(0) probably_damaging(1) TCGA-44-2656-01 3 113375768 113375768 G T KIAA2018 Missense_Mutation p.N1587K 0.21 benign(0.075) TCGA-44-2656-01 3 115805319 115805319 C A LSAMP Silent p.L80L 0.15 TCGA-44-2656-01 3 120417341 120417341 T A RABL3 Missense_Mutation p.T155S 0.20 tolerated(0.79) benign(0.002) TCGA-44-2656-01 3 121209249 121209249 C A POLQ Silent p.R843R 0.24 TCGA-44-2656-01 3 121342078 121342078 T G FBXO40 Missense_Mutation p.V601G 0.05 tolerated(0.4) benign(0.085) TCGA-44-2656-01 3 123046503 123046503 T A ADCY5 Missense_Mutation p.I637F 0.14 deleterious(0) probably_damaging(0.979) TCGA-44-2656-01 3 125850370 125850370 C A ALDH1L1 Missense_Mutation p.D504Y 0.33 deleterious(0) probably_damaging(0.923) TCGA-44-2656-01 3 125872401 125872401 C G ALDH1L1 Silent p.T258T 0.17 TCGA-44-2656-01 3 126255153 126255153 G C CHST13 Missense_Mutation p.G46A 0.26 tolerated(0.06) probably_damaging(0.998) TCGA-44-2656-01 3 127842427 127842427 C A RUVBL1 Missense_Mutation p.E47D 0.16 deleterious(0) possibly_damaging(0.788) TCGA-44-2656-01 3 129279567 129279567 C G PLXND1 Splice_Site p.X1665_splice 0.18 TCGA-44-2656-01 3 132440852 132440852 C T NPHP3 Silent p.E116E 0.17 TCGA-44-2656-01 3 137483858 137483858 C A SOX14 Silent p.R78R 0.14 TCGA-44-2656-01 3 138014742 138014742 G A ARMC8 3'UTR 0.29 TCGA-44-2656-01 3 1415642 1415642 A C CNTN6 Silent p.A660A 0.29 TCGA-44-2656-01 3 142681802 142681802 G T PAQR9 Missense_Mutation p.A126E 0.39 deleterious(0.01) probably_damaging(0.985) TCGA-44-2656-01 3 142840553 142840553 C G CHST2 Missense_Mutation p.R299G 0.45 tolerated(0.45) benign(0.007) TCGA-44-2656-01 3 151154859 151154859 G T IGSF10 Missense_Mutation p.T2497K 0.28 deleterious(0.04) possibly_damaging(0.906) TCGA-44-2656-01 3 151164627 151164627 C A IGSF10 Nonsense_Mutation p.E1048* 0.25 TCGA-44-2656-01 3 151474962 151474962 G A AADACL2 Nonsense_Mutation p.W262* 0.29 TCGA-44-2656-01 3 159998598 159998598 T A IFT80 Silent p.T507T 0.47 TCGA-44-2656-01 3 160120494 160120494 A T SMC4 Missense_Mutation p.S117C 0.27 deleterious(0) probably_damaging(0.996) TCGA-44-2656-01 3 182681763 182681763 T C DCUN1D1 Missense_Mutation p.S99G 0.06 deleterious(0.02) benign(0.072) TCGA-44-2656-01 3 183209920 183209920 G C KLHL6 Missense_Mutation p.A554G 0.28 deleterious(0.01) possibly_damaging(0.715) TCGA-44-2656-01 3 186505350 186505350 G T EIF4A2 Missense_Mutation p.V326F 0.21 deleterious(0) probably_damaging(0.993) TCGA-44-2656-01 3 196663826 196663826 C T NCBP2 3'UTR 0.07 TCGA-44-2656-01 3 25835674 25835674 G T OXSM Missense_Mutation p.A357S 0.15 tolerated(0.1) possibly_damaging(0.541) TCGA-44-2656-01 3 2908612 2908612 C A CNTN4 Missense_Mutation p.P211T 0.24 deleterious(0.02) possibly_damaging(0.831) TCGA-44-2656-01 3 3131894 3131894 G T IL5RA Intron 0.31 TCGA-44-2656-01 3 32933145 32933145 C T TRIM71 Missense_Mutation p.R817W 0.07 deleterious(0) probably_damaging(1) TCGA-44-2656-01 3 36872739 36872739 C T TRANK1 Missense_Mutation p.G2735S 0.22 tolerated_low_confidence(0.89) benign(0.009) TCGA-44-2656-01 3 38316550 38316550 G T SLC22A13 Silent p.G236G 0.27 TCGA-44-2656-01 3 41860964 41860964 G T ULK4 Missense_Mutation p.A600D 0.08 tolerated(0.28) benign(0.04) TCGA-44-2656-01 3 42738369 42738369 C A HHATL Silent p.T337T 0.47 TCGA-44-2656-01 3 44951851 44951851 C A TGM4 Missense_Mutation p.Q533K 0.33 tolerated(0.22) benign(0.007) TCGA-44-2656-01 3 46021226 46021226 C A FYCO1 Missense_Mutation p.G87W 0.29 deleterious(0) probably_damaging(1) TCGA-44-2656-01 3 50368057 50368057 G A RASSF1 Silent p.C330C 0.40 TCGA-44-2656-01 3 52818397 52818397 C T ITIH1 Silent p.H437H 0.38 TCGA-44-2656-01 3 54872616 54872616 G T CACNA2D3 Nonsense_Mutation p.G498* 0.06 TCGA-44-2656-01 3 62636588 62636588 G C CADPS Missense_Mutation p.I379M 0.12 tolerated(0.38) possibly_damaging(0.453) TCGA-44-2656-01 3 62751567 62751567 G T CADPS Missense_Mutation p.N178K 0.17 tolerated(0.12) possibly_damaging(0.557) TCGA-44-2656-01 3 68055693 68055693 C A FAM19A1 Intron 0.31 TCGA-44-2656-01 3 73432850 73432850 C A PDZRN3 Missense_Mutation p.G956V 0.25 deleterious(0) probably_damaging(0.971) TCGA-44-2656-01 3 73432940 73432940 C G PDZRN3 Missense_Mutation p.R926P 0.22 deleterious(0) probably_damaging(0.996) TCGA-44-2656-01 3 96706434 96706434 C A EPHA6 Missense_Mutation p.N237K 0.21 deleterious(0.03) benign(0.075) TCGA-44-2656-01 3 98110266 98110266 C A OR5K3 Missense_Mutation p.L253I 0.26 deleterious(0.05) benign(0.126) TCGA-44-2656-01 3 98188534 98188534 C G OR5K1 Silent p.T38T 0.20 TCGA-44-2656-01 3 98241753 98241753 C A CLDND1 5'UTR 0.27 TCGA-44-2656-01 4 109670480 109670480 C T ETNPPL Missense_Mutation p.G281S 0.20 deleterious(0) probably_damaging(1) TCGA-44-2656-01 4 109861765 109861765 C A COL25A1 Missense_Mutation p.G201V 0.09 deleterious(0) unknown(0) TCGA-44-2656-01 4 111397441 111397441 G C ENPEP 5'UTR 0.16 TCGA-44-2656-01 4 115773883 115773883 G C NDST4 Missense_Mutation p.T605R 0.12 deleterious(0) probably_damaging(1) TCGA-44-2656-01 4 118006108 118006108 C A TRAM1L1 Missense_Mutation p.D148Y 0.22 deleterious(0.04) benign(0.366) TCGA-44-2656-01 4 119158234 119158234 C A NDST3 Silent p.V659V 0.12 TCGA-44-2656-01 4 119948371 119948371 C T SYNPO2 Missense_Mutation p.R283W 0.21 deleterious(0) probably_damaging(0.924) TCGA-44-2656-01 4 119951975 119951975 G T SYNPO2 Missense_Mutation p.G682V 0.10 deleterious(0) probably_damaging(1) TCGA-44-2656-01 4 121631535 121631535 C T PRDM5 Missense_Mutation p.A553T 0.18 tolerated(0.12) possibly_damaging(0.672) TCGA-44-2656-01 4 123260563 123260563 G T KIAA1109 Missense_Mutation p.G4118C 0.21 possibly_damaging(0.706) TCGA-44-2656-01 4 128632153 128632153 G T INTU Nonsense_Mutation p.E819* 0.22 TCGA-44-2656-01 4 134084177 134084177 G T PCDH10 Missense_Mutation p.G948V 0.18 deleterious(0.04) probably_damaging(1) TCGA-44-2656-01 4 13605956 13605956 A G BOD1L1 Silent p.G856G 0.10 TCGA-44-2656-01 4 139988852 139988852 G C ELF2 Missense_Mutation p.P188R 0.11 tolerated(0.15) benign(0.252) TCGA-44-2656-01 4 147425062 147425062 C A SLC10A7 Missense_Mutation p.G112V 0.15 tolerated(0.1) benign(0.139) TCGA-44-2656-01 4 153691700 153691700 C A TIGD4 Missense_Mutation p.G153C 0.22 deleterious(0.01) benign(0.376) TCGA-44-2656-01 4 153802270 153802270 G T ARFIP1 Missense_Mutation p.M189I 0.23 tolerated(0.32) benign(0.034) TCGA-44-2656-01 4 153889217 153889217 G A FHDC1 Missense_Mutation p.E396K 0.31 tolerated(0.09) possibly_damaging(0.893) TCGA-44-2656-01 4 155298498 155298498 G T DCHS2 Silent p.I111I 0.19 TCGA-44-2656-01 4 155490753 155490753 G A FGB Missense_Mutation p.G349E 0.06 deleterious(0.02) probably_damaging(0.936) TCGA-44-2656-01 4 155670250 155670250 G T LRAT Missense_Mutation p.A219S 0.17 tolerated(0.16) benign(0.024) TCGA-44-2656-01 4 156135962 156135962 G T NPY2R Missense_Mutation p.V291F 0.21 tolerated(0.05) possibly_damaging(0.545) TCGA-44-2656-01 4 160273941 160273941 G T RAPGEF2 Missense_Mutation p.V1163L 0.17 tolerated_low_confidence(0.31) benign(0.002) TCGA-44-2656-01 4 164393898 164393898 G T TKTL2 Missense_Mutation p.A330D 0.23 deleterious(0.02) probably_damaging(0.994) TCGA-44-2656-01 4 166981296 166981296 A T TLL1 Nonsense_Mutation p.R655* 0.27 TCGA-44-2656-01 4 185697670 185697670 C A ACSL1 Missense_Mutation p.G242W 0.16 deleterious(0) probably_damaging(0.999) TCGA-44-2656-01 4 189068505 189068505 C A TRIML1 Nonsense_Mutation p.C462* 0.22 TCGA-44-2656-01 4 25014018 25014018 G A LGI2 Silent p.N253N 0.26 TCGA-44-2656-01 4 39515801 39515801 C A UGDH Nonsense_Mutation p.G56* 0.14 TCGA-44-2656-01 4 40440430 40440430 T A RBM47 Missense_Mutation p.M161L 0.27 tolerated(0.2) benign(0.001) TCGA-44-2656-01 4 41750472 41750472 C A PHOX2B Silent p.G52G 0.26 TCGA-44-2656-01 4 44626769 44626769 C A YIPF7 Missense_Mutation p.G177C 0.33 deleterious(0) probably_damaging(1) TCGA-44-2656-01 4 47427876 47427876 G T GABRB1 Silent p.G422G 0.21 TCGA-44-2656-01 4 48069580 48069580 C A TXK 3'UTR 0.26 TCGA-44-2656-01 4 48069582 48069582 C A TXK 3'UTR 0.26 TCGA-44-2656-01 4 57182405 57182405 G T KIAA1211 Missense_Mutation p.A913S 0.22 tolerated(0.25) benign(0.001) TCGA-44-2656-01 4 66230783 66230783 G T EPHA5 Missense_Mutation p.Q730K 0.18 deleterious(0) possibly_damaging(0.826) TCGA-44-2656-01 4 6718442 6718442 C T BLOC1S4 Missense_Mutation p.A169V 0.06 deleterious(0.05) possibly_damaging(0.503) TCGA-44-2656-01 4 68436840 68436840 T A STAP1 Silent p.T53T 0.30 TCGA-44-2656-01 4 69811061 69811061 C T UGT2A3 Missense_Mutation p.G276E 0.22 deleterious(0) probably_damaging(0.982) TCGA-44-2656-01 4 70513291 70513291 C A UGT2A1 Missense_Mutation p.L24F 0.27 deleterious(0) probably_damaging(0.995) TCGA-44-2656-01 4 71114727 71114727 G C CSN3 Missense_Mutation p.D34H 0.25 deleterious(0.01) probably_damaging(0.961) TCGA-44-2656-01 4 81866088 81866088 C A C4orf22 Missense_Mutation p.P218T 0.19 deleterious(0) probably_damaging(0.988) TCGA-44-2656-01 4 83278025 83278025 C - HNRNPD Frame_Shift_Del p.K260Rfs*109 0.21 TCGA-44-2656-01 4 83740390 83740390 G T SEC31A Missense_Mutation p.T1167N 0.28 deleterious(0) benign(0.094) TCGA-44-2656-01 4 88035722 88035722 G T AFF1 Silent p.R579R 0.23 TCGA-44-2656-01 4 88767150 88767150 C A MEPE Missense_Mutation p.A377E 0.24 tolerated(1) benign(0.347) TCGA-44-2656-01 4 88767161 88767161 G C MEPE Missense_Mutation p.E381Q 0.21 tolerated(0.05) possibly_damaging(0.827) TCGA-44-2656-01 4 95210624 95210624 G T SMARCAD1 Missense_Mutation p.G1009V 0.27 deleterious(0.01) benign(0.055) TCGA-44-2656-01 4 98480220 98480220 C T STPG2 Missense_Mutation p.D457N 0.08 tolerated_low_confidence(0.9) benign(0) TCGA-44-2656-01 4 98865110 98865110 A G STPG2 Silent p.L328L 0.05 TCGA-44-2656-01 5 109117174 109117174 G C MAN2A1 Silent p.S484S 0.22 TCGA-44-2656-01 5 110440497 110440497 A T WDR36 Silent p.G392G 0.09 TCGA-44-2656-01 5 110446486 110446486 G T WDR36 Splice_Site p.X537_splice 0.19 TCGA-44-2656-01 5 110730473 110730473 C A CAMK4 Missense_Mutation p.A151E 0.12 deleterious(0) probably_damaging(0.999) TCGA-44-2656-01 5 11346694 11346694 C A CTNND2 Missense_Mutation p.G473V 0.23 deleterious(0.04) benign(0.147) TCGA-44-2656-01 5 120022158 120022158 G T PRR16 Silent p.R200R 0.22 TCGA-44-2656-01 5 1212589 1212589 C T SLC6A19 Missense_Mutation p.T218I 0.16 deleterious(0) probably_damaging(0.994) TCGA-44-2656-01 5 1213592 1213592 C A SLC6A19 Silent p.T226T 0.22 TCGA-44-2656-01 5 121402393 121402393 G T LOX 3'UTR 0.13 TCGA-44-2656-01 5 128440942 128440942 G A ISOC1 Missense_Mutation p.G165E 0.36 deleterious(0) probably_damaging(1) TCGA-44-2656-01 5 132270357 132270357 G A AFF4 Nonsense_Mutation p.Q134* 0.34 TCGA-44-2656-01 5 137476521 137476521 C T BRD8 Missense_Mutation p.R1163H 0.04 tolerated(0.1) benign(0.001) TCGA-44-2656-01 5 140181997 140181997 C T PCDHA3 Silent p.Y405Y 0.35 TCGA-44-2656-01 5 140222743 140222743 C A PCDHA8 Missense_Mutation p.P613T 0.48 deleterious_low_confidence(0.02) benign(0.152) TCGA-44-2656-01 5 140255192 140255192 G T PCDHA12 Silent p.V45V 0.36 TCGA-44-2656-01 5 140264058 140264058 C A PCDHA13 Silent p.G735G 0.12 TCGA-44-2656-01 5 140504017 140504017 C A PCDHB4 3'UTR 0.29 TCGA-44-2656-01 5 140553818 140553818 C A PCDHB7 Missense_Mutation p.L468M 0.32 deleterious_low_confidence(0.02) possibly_damaging(0.543) TCGA-44-2656-01 5 140559208 140559208 G A PCDHB8 Silent p.R531R 0.13 TCGA-44-2656-01 5 140712339 140712339 G T PCDHGA1 Silent p.A696A 0.31 TCGA-44-2656-01 5 140773147 140773147 C A PCDHGA8 Missense_Mutation p.P256H 0.33 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-44-2656-01 5 140774234 140774234 G C PCDHGA8 Silent p.S618S 0.10 TCGA-44-2656-01 5 140783353 140783353 A T PCDHGA9 Silent p.A278A 0.27 TCGA-44-2656-01 5 140784676 140784676 G T PCDHGA9 Missense_Mutation p.W719C 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.671) TCGA-44-2656-01 5 149644579 149644579 C A CAMK2A Splice_Site p.X53_splice 0.17 TCGA-44-2656-01 5 167525048 167525048 C A TENM2 Missense_Mutation p.P577T 0.25 tolerated(0.08) benign(0.088) TCGA-44-2656-01 5 178506336 178506336 A T ZNF354C Silent p.R301R 0.10 TCGA-44-2656-01 5 179250885 179250885 G T SQSTM1 Missense_Mutation p.R110L 0.28 tolerated(0.09) benign(0.116) TCGA-44-2656-01 5 31297485 31297485 C G CDH6 Missense_Mutation p.Q205E 0.08 tolerated(0.13) possibly_damaging(0.901) TCGA-44-2656-01 5 33631016 33631016 G A ADAMTS12 Missense_Mutation p.H631Y 0.05 tolerated(0.06) benign(0.002) TCGA-44-2656-01 5 35691149 35691149 G T SPEF2 Missense_Mutation p.G512V 0.17 deleterious(0) probably_damaging(0.998) TCGA-44-2656-01 5 35793323 35793323 G T SPEF2 Silent p.L1539L 0.12 TCGA-44-2656-01 5 36686206 36686206 C A SLC1A3 Silent p.S488S 0.05 TCGA-44-2656-01 5 37815930 37815930 C A GDNF Missense_Mutation p.E170D 0.15 deleterious(0.05) benign(0.435) TCGA-44-2656-01 5 38947422 38947422 C A RICTOR Missense_Mutation p.G1420C 0.17 tolerated(0.16) benign(0.002) TCGA-44-2656-01 5 39021164 39021164 C A RICTOR Missense_Mutation p.G58C 0.17 deleterious(0) probably_damaging(0.993) TCGA-44-2656-01 5 39376907 39376907 C A DAB2 Missense_Mutation p.R661L 0.09 tolerated(0.05) benign(0.177) TCGA-44-2656-01 5 40931243 40931243 T - C7 Splice_Site p.X46_splice 0.19 TCGA-44-2656-01 5 41510644 41510644 G T PLCXD3 5'UTR 0.35 TCGA-44-2656-01 5 50091127 50091127 G A PARP8 Missense_Mutation p.S435N 0.22 tolerated_low_confidence(0.5) benign(0.001) TCGA-44-2656-01 5 5319167 5319167 C A ADAMTS16 Nonsense_Mutation p.C1197* 0.46 TCGA-44-2656-01 5 54527229 54527229 A G CCNO Missense_Mutation p.C343R 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-2656-01 5 58120870 58120870 C A RAB3C Missense_Mutation p.T126N 0.17 tolerated(0.2) benign(0.018) TCGA-44-2656-01 5 63803699 63803699 C G RGS7BP Missense_Mutation p.I109M 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.506) TCGA-44-2656-01 5 64769560 64769560 T C ADAMTS6 5'UTR 0.24 TCGA-44-2656-01 5 70797393 70797393 A T BDP1 Missense_Mutation p.H654L 0.19 tolerated(0.36) benign(0.069) TCGA-44-2656-01 5 73165952 73165952 A T ARHGEF28 Silent p.A828A 0.15 TCGA-44-2656-01 5 75757446 75757446 G T IQGAP2 Missense_Mutation p.R33L 0.14 deleterious(0.04) probably_damaging(0.978) TCGA-44-2656-01 5 76926342 76926342 G T OTP Missense_Mutation p.A242E 0.41 tolerated(0.09) benign(0.09) TCGA-44-2656-01 5 78610543 78610543 G T JMY Missense_Mutation p.R843I 0.28 deleterious(0.04) benign(0.001) TCGA-44-2656-01 5 80408586 80408586 C A RASGRF2 Missense_Mutation p.L666M 0.21 deleterious(0) probably_damaging(0.986) TCGA-44-2656-01 5 82837202 82837202 G C VCAN Missense_Mutation p.E2794Q 0.07 deleterious(0.05) benign(0.082) TCGA-44-2656-01 5 83239283 83239283 C G EDIL3 Missense_Mutation p.R466S 0.24 tolerated(0.23) probably_damaging(0.993) TCGA-44-2656-01 5 87494880 87494880 C A TMEM161B Silent p.L334L 0.10 TCGA-44-2656-01 5 88057031 88057031 C A MEF2C Intron 0.21 TCGA-44-2656-01 5 92929645 92929645 C A NR2F1 3'UTR 0.25 TCGA-44-2656-01 6 114270215 114270215 C T HDAC2 Missense_Mutation p.A257T 0.24 deleterious(0) benign(0.203) TCGA-44-2656-01 6 129511367 129511367 A T LAMA2 Silent p.G495G 0.29 TCGA-44-2656-01 6 135539023 135539023 C A MYB Missense_Mutation p.P731T 0.32 tolerated(0.22) benign(0.001) TCGA-44-2656-01 6 146262871 146262871 C G SHPRH Missense_Mutation p.R793P 0.37 deleterious(0) probably_damaging(0.966) TCGA-44-2656-01 6 150067678 150067678 C A NUP43 5'UTR 0.28 TCGA-44-2656-01 6 152265375 152265375 C A ESR1 Silent p.G276G 0.27 TCGA-44-2656-01 6 152763330 152763330 G T SYNE1 Silent p.I1296I 0.27 TCGA-44-2656-01 6 160977165 160977165 T A LPA Missense_Mutation p.Q1622L 0.24 tolerated(0.13) probably_damaging(0.986) TCGA-44-2656-01 6 16328052 16328052 C A ATXN1 Missense_Mutation p.G164W 0.33 tolerated(0.19) possibly_damaging(0.759) TCGA-44-2656-01 6 170088913 170088913 C A WDR27 Missense_Mutation p.Q63H 0.27 deleterious(0) probably_damaging(0.991) TCGA-44-2656-01 6 24134721 24134721 A T NRSN1 Missense_Mutation p.R56W 0.24 tolerated(0.11) benign(0.036) TCGA-44-2656-01 6 24596192 24596192 G C KIAA0319 Missense_Mutation p.P237R 0.10 deleterious(0.01) possibly_damaging(0.467) TCGA-44-2656-01 6 24843104 24843104 C G FAM65B Missense_Mutation p.D636H 0.17 deleterious(0.01) probably_damaging(0.985) TCGA-44-2656-01 6 25769244 25769244 C A SLC17A4 Silent p.L41L 0.25 TCGA-44-2656-01 6 28971704 28971704 C G ZNF311 Intron 0.16 TCGA-44-2656-01 6 29141790 29141790 T C OR2J2 Silent p.A126A 0.22 TCGA-44-2656-01 6 30954905 30954905 C A MUC21 Missense_Mutation p.S318Y 0.09 deleterious(0.01) unknown(0) TCGA-44-2656-01 6 30955175 30955175 C A MUC21 Missense_Mutation p.S408Y 0.13 deleterious(0.03) unknown(0) TCGA-44-2656-01 6 31614237 31614237 G C BAG6 Silent p.L290L 0.04 TCGA-44-2656-01 6 32168740 32168740 C A NOTCH4 Missense_Mutation p.D1395Y 0.44 deleterious(0) possibly_damaging(0.815) TCGA-44-2656-01 6 3324006 3324006 C G SLC22A23 Intron 0.43 TCGA-44-2656-01 6 348110 348110 G T DUSP22 Missense_Mutation p.G91W 0.06 deleterious(0) probably_damaging(1) TCGA-44-2656-01 6 43096872 43096872 C T PTK7 Silent p.F87F 0.08 TCGA-44-2656-01 6 43472822 43472822 G A TJAP1 Silent p.P301P 0.16 TCGA-44-2656-01 6 46657599 46657599 G T TDRD6 Silent p.V578V 0.23 TCGA-44-2656-01 6 46806811 46806811 G T MEP1A Missense_Mutation p.A727S 0.21 tolerated(0.06) possibly_damaging(0.611) TCGA-44-2656-01 6 47846506 47846506 C G PTCHD4 Missense_Mutation p.V692L 0.16 tolerated(0.23) probably_damaging(0.976) TCGA-44-2656-01 6 50011302 50011302 C T DEFB112 Missense_Mutation p.D110N 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.539) TCGA-44-2656-01 6 50791250 50791250 C A TFAP2B Missense_Mutation p.P71Q 0.27 deleterious(0) probably_damaging(0.994) TCGA-44-2656-01 6 6318869 6318869 C T F13A1 Missense_Mutation p.G10E 0.18 tolerated_low_confidence(0.08) benign(0.367) TCGA-44-2656-01 6 72806785 72806785 G T RIMS1 Missense_Mutation p.G127W 0.21 deleterious(0) probably_damaging(0.999) TCGA-44-2656-01 6 74440084 74440084 A T CD109 Silent p.A98A 0.29 TCGA-44-2656-01 6 85446332 85446332 C A TBX18 3'UTR 0.21 TCGA-44-2656-01 6 87966098 87966098 G T ZNF292 Missense_Mutation p.L917F 0.33 tolerated_low_confidence(0.44) benign(0.323) TCGA-44-2656-01 6 89895078 89895078 G A GABRR1 Silent p.L249L 0.07 TCGA-44-2656-01 6 93964397 93964397 C T EPHA7 Missense_Mutation p.E834K 0.31 deleterious(0) probably_damaging(0.997) TCGA-44-2656-01 6 97063550 97063550 G T FHL5 Missense_Mutation p.G253W 0.24 tolerated(0.07) probably_damaging(0.96) TCGA-44-2656-01 6 97246908 97246908 T G GPR63 Missense_Mutation p.T234P 0.30 tolerated(0.14) benign(0.03) TCGA-44-2656-01 6 97247592 97247592 C A GPR63 Missense_Mutation p.V6L 0.39 tolerated_low_confidence(0.95) benign(0.001) TCGA-44-2656-01 7 100348394 100348394 G A ZAN Missense_Mutation p.E466K 0.11 benign(0.064) TCGA-44-2656-01 7 100350034 100350034 C A ZAN Missense_Mutation p.S769Y 0.30 unknown(0) TCGA-44-2656-01 7 100382441 100382441 T C ZAN Silent p.H2272H 0.15 TCGA-44-2656-01 7 100678604 100678604 G T MUC17 Missense_Mutation p.V1303F 0.34 unknown(0) TCGA-44-2656-01 7 100680895 100680895 A C MUC17 Silent p.T2066T 0.16 TCGA-44-2656-01 7 101190456 101190456 C A COL26A1 Silent p.A292A 0.16 TCGA-44-2656-01 7 106515249 106515249 G T PIK3CG Splice_Site p.X797_splice 0.11 TCGA-44-2656-01 7 11022088 11022088 G T PHF14 Nonsense_Mutation p.E68* 0.35 TCGA-44-2656-01 7 11068427 11068427 A T PHF14 Silent p.S479S 0.14 TCGA-44-2656-01 7 115580562 115580562 C A TFEC 3'UTR 0.26 TCGA-44-2656-01 7 11582602 11582602 C A THSD7A Missense_Mutation p.Q532H 0.28 tolerated(0.24) possibly_damaging(0.707) TCGA-44-2656-01 7 120911454 120911454 A T CPED1 Silent p.L946L 0.25 TCGA-44-2656-01 7 120911455 120911455 C A CPED1 Missense_Mutation p.Q947K 0.24 deleterious(0.01) benign(0.334) TCGA-44-2656-01 7 121623757 121623757 C G PTPRZ1 Missense_Mutation p.L220V 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-44-2656-01 7 123257663 123257663 C A ASB15 Missense_Mutation p.T108N 0.23 deleterious(0.02) benign(0.329) TCGA-44-2656-01 7 123257664 123257664 C A ASB15 Silent p.T108T 0.23 TCGA-44-2656-01 7 124386577 124386577 C G GPR37 3'UTR 0.11 TCGA-44-2656-01 7 126173069 126173069 G A GRM8 Silent p.T789T 0.13 TCGA-44-2656-01 7 126173340 126173340 G T GRM8 Missense_Mutation p.T699N 0.37 deleterious(0.02) probably_damaging(0.968) TCGA-44-2656-01 7 126173694 126173694 G T GRM8 Missense_Mutation p.S581Y 0.11 deleterious(0) probably_damaging(0.998) TCGA-44-2656-01 7 128394426 128394426 G T CALU Intron 0.34 TCGA-44-2656-01 7 128450286 128450286 C A CCDC136 Missense_Mutation p.Q632K 0.60 deleterious(0.03) probably_damaging(0.998) TCGA-44-2656-01 7 128806740 128806740 C A TSPAN33 Missense_Mutation p.P194H 0.35 tolerated(0.11) possibly_damaging(0.537) TCGA-44-2656-01 7 131866251 131866251 G A PLXNA4 Silent p.S1127S 0.22 TCGA-44-2656-01 7 137600584 137600584 C A CREB3L2 Missense_Mutation p.G165V 0.23 tolerated(0.28) benign(0.255) TCGA-44-2656-01 7 140396540 140396540 C T NDUFB2 5'UTR 0.41 TCGA-44-2656-01 7 141734530 141734530 G T MGAM Silent p.A616A 0.12 TCGA-44-2656-01 7 141755465 141755465 C A MGAM Missense_Mutation p.S1141Y 0.40 deleterious(0) benign(0.037) TCGA-44-2656-01 7 141765177 141765177 C A MGAM Silent p.T1509T 0.21 TCGA-44-2656-01 7 142045525 142045525 C A TRBV4-2 Missense_Mutation p.P18H 0.06 deleterious(0) probably_damaging(1) TCGA-44-2656-01 7 142124423 142124423 C A TRBV6-8 Missense_Mutation p.V19L 0.35 tolerated(0.19) benign(0.008) TCGA-44-2656-01 7 14216490 14216490 C A DGKB Nonsense_Mutation p.E761* 0.32 TCGA-44-2656-01 7 142168457 142168457 G T TRBV5-4 Missense_Mutation p.P89H 0.06 tolerated(0.07) benign(0.003) TCGA-44-2656-01 7 142625790 142625790 G T TRPV5 Missense_Mutation p.T253N 0.35 deleterious(0.03) possibly_damaging(0.846) TCGA-44-2656-01 7 143633070 143633070 G - OR2F2 Frame_Shift_Del p.A249Pfs*25 0.08 TCGA-44-2656-01 7 144097391 144097391 G A NOBOX Silent p.L287L 0.30 TCGA-44-2656-01 7 147259322 147259322 C A CNTNAP2 Missense_Mutation p.P624T 0.33 deleterious(0) probably_damaging(0.951) TCGA-44-2656-01 7 149431011 149431011 G T KRBA1 Missense_Mutation p.V989L 0.23 deleterious(0.01) possibly_damaging(0.893) TCGA-44-2656-01 7 150500824 150500824 C T TMEM176A Silent p.I153I 0.37 TCGA-44-2656-01 7 150878458 150878458 C A ASB10 Silent p.R224R 0.39 TCGA-44-2656-01 7 150939644 150939644 C A SMARCD3 Missense_Mutation p.A168S 0.32 tolerated(0.26) benign(0.013) TCGA-44-2656-01 7 151962159 151962159 C A KMT2C Missense_Mutation p.W383L 0.04 probably_damaging(0.999) TCGA-44-2656-01 7 154775016 154775016 C A PAXIP1 Silent p.L117L 0.09 TCGA-44-2656-01 7 18067033 18067033 T A PRPS1L1 Missense_Mutation p.I125F 0.31 deleterious(0) possibly_damaging(0.774) TCGA-44-2656-01 7 21631013 21631013 C T DNAH11 Missense_Mutation p.R829C 0.12 benign(0.013) TCGA-44-2656-01 7 23826529 23826529 C A STK31 Missense_Mutation p.P825T 0.15 deleterious(0) probably_damaging(0.996) TCGA-44-2656-01 7 2582880 2582880 T C BRAT1 Missense_Mutation p.H294R 0.21 deleterious(0.01) benign(0.164) TCGA-44-2656-01 7 26779578 26779578 G A SKAP2 Nonsense_Mutation p.Q105* 0.13 TCGA-44-2656-01 7 27135327 27135327 G T HOXA1 Missense_Mutation p.H69N 0.32 tolerated(0.19) probably_damaging(0.946) TCGA-44-2656-01 7 27140626 27140626 G T HOXA2 Missense_Mutation p.L284M 0.31 deleterious(0.05) possibly_damaging(0.871) TCGA-44-2656-01 7 27147954 27147954 G T HOXA3 Silent p.T304T 0.32 TCGA-44-2656-01 7 27196029 27196029 C G HOXA7 Missense_Mutation p.A46P 0.17 tolerated(0.12) benign(0.022) TCGA-44-2656-01 7 2985553 2985553 C A CARD11 Missense_Mutation p.R86S 0.12 deleterious(0) probably_damaging(1) TCGA-44-2656-01 7 29966088 29966088 C T SCRN1 Missense_Mutation p.A376T 0.05 tolerated(0.35) benign(0.002) TCGA-44-2656-01 7 29980415 29980415 C G SCRN1 Missense_Mutation p.A228P 0.16 deleterious(0) probably_damaging(0.994) TCGA-44-2656-01 7 33545221 33545221 G A BBS9 Silent p.A754A 0.08 TCGA-44-2656-01 7 36396906 36396906 C A KIAA0895 Missense_Mutation p.V158L 0.21 tolerated_low_confidence(0.81) benign(0.002) TCGA-44-2656-01 7 37780650 37780650 C A GPR141 Missense_Mutation p.Q219K 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-44-2656-01 7 4153708 4153708 G T SDK1 Missense_Mutation p.V1209L 0.10 tolerated(0.1) possibly_damaging(0.566) TCGA-44-2656-01 7 43283518 43283518 T A HECW1 Missense_Mutation p.L5Q 0.40 tolerated_low_confidence(0.11) benign(0.259) TCGA-44-2656-01 7 45011815 45011815 C G MYO1G Missense_Mutation p.G210R 0.10 deleterious(0.01) probably_damaging(1) TCGA-44-2656-01 7 48452087 48452087 G T ABCA13 Missense_Mutation p.K4122N 0.22 benign(0.347) TCGA-44-2656-01 7 50596906 50596906 C A DDC Missense_Mutation p.Q190H 0.26 deleterious(0.01) possibly_damaging(0.883) TCGA-44-2656-01 7 51096651 51096651 C A COBL Missense_Mutation p.K714N 0.25 deleterious(0) possibly_damaging(0.894) TCGA-44-2656-01 7 51111277 51111277 C A COBL Silent p.T403T 0.28 TCGA-44-2656-01 7 540753 540753 C A PDGFA Nonsense_Mutation p.G194* 0.05 TCGA-44-2656-01 7 54612473 54612473 G T VSTM2A Missense_Mutation p.G80C 0.32 deleterious(0.03) probably_damaging(0.946) TCGA-44-2656-01 7 54617601 54617601 A T VSTM2A Missense_Mutation p.L124F 0.29 deleterious(0.02) probably_damaging(1) TCGA-44-2656-01 7 55991322 55991322 G T MRPS17 Missense_Mutation p.E66D 0.28 tolerated_low_confidence(1) unknown(0) TCGA-44-2656-01 7 6006564 6006564 G - RSPH10B Frame_Shift_Del p.Q62Kfs*17 0.14 TCGA-44-2656-01 7 66264318 66264318 G T KCTD7 Missense_Mutation p.R246L 0.40 deleterious(0.01) benign(0.023) TCGA-44-2656-01 7 82387821 82387821 T C PCLO 3'UTR 0.08 TCGA-44-2656-01 7 83640407 83640407 T C SEMA3A Missense_Mutation p.Q309R 0.38 tolerated(0.39) possibly_damaging(0.806) TCGA-44-2656-01 7 86415735 86415735 C T GRM3 Silent p.N209N 0.08 TCGA-44-2656-01 7 87011391 87011391 G T CROT Missense_Mutation p.G383V 0.30 deleterious(0) probably_damaging(0.998) TCGA-44-2656-01 7 87913403 87913403 C T STEAP4 Missense_Mutation p.G61D 0.16 tolerated(0.23) benign(0.247) TCGA-44-2656-01 7 88963931 88963931 G T ZNF804B Missense_Mutation p.W545C 0.25 tolerated(0.19) probably_damaging(0.959) TCGA-44-2656-01 7 92764820 92764820 C - SAMD9L Frame_Shift_Del p.K155Nfs*2 0.18 TCGA-44-2656-01 7 98633309 98633309 A C SMURF1 Missense_Mutation p.L640V 0.19 tolerated(1) benign(0.001) TCGA-44-2656-01 8 100779108 100779121 TCAATCTCGTGAAT - VPS13B Frame_Shift_Del p.I2411Rfs*23 0.15 TCGA-44-2656-01 8 101051202 101051202 T C RGS22 Missense_Mutation p.Y708C 0.22 deleterious(0) probably_damaging(0.999) TCGA-44-2656-01 8 101078403 101078403 G C RGS22 Missense_Mutation p.S239C 0.05 deleterious(0.04) possibly_damaging(0.867) TCGA-44-2656-01 8 10469886 10469886 G T RP1L1 Silent p.P574P 0.19 TCGA-44-2656-01 8 106814424 106814424 A G ZFPM2 Missense_Mutation p.H705R 0.34 deleterious(0) probably_damaging(0.999) TCGA-44-2656-01 8 10690446 10690446 C A SOX7 Missense_Mutation p.V60L 0.14 deleterious_low_confidence(0) benign(0.127) TCGA-44-2656-01 8 109001368 109001368 C A RSPO2 Missense_Mutation p.G67W 0.27 deleterious(0) probably_damaging(0.995) TCGA-44-2656-01 8 110478928 110478928 C A PKHD1L1 Missense_Mutation p.H2845Q 0.34 deleterious(0) probably_damaging(0.988) TCGA-44-2656-01 8 113569119 113569119 T A CSMD3 Missense_Mutation p.Q1369H 0.29 tolerated(0.13) benign(0.159) TCGA-44-2656-01 8 113668510 113668510 T A CSMD3 Silent p.S959S 0.06 TCGA-44-2656-01 8 113988292 113988292 G T CSMD3 Missense_Mutation p.S372R 0.11 tolerated(0.15) benign(0.017) TCGA-44-2656-01 8 11406563 11406563 C A BLK Silent p.L100L 0.21 TCGA-44-2656-01 8 122626343 122626343 G C HAS2 3'UTR 0.38 TCGA-44-2656-01 8 122641133 122641133 T A HAS2 Missense_Mutation p.N150Y 0.06 deleterious(0.01) benign(0.049) TCGA-44-2656-01 8 124449458 124449458 G T WDYHV1 Missense_Mutation p.R131I 0.17 deleterious(0) probably_damaging(1) TCGA-44-2656-01 8 125110055 125110055 C A FER1L6 Missense_Mutation p.T1605N 0.39 deleterious(0) probably_damaging(0.929) TCGA-44-2656-01 8 131797656 131797656 G T ADCY8 Silent p.A1042A 0.12 TCGA-44-2656-01 8 133912549 133912549 A G TG Missense_Mutation p.E1133G 0.09 deleterious(0.01) possibly_damaging(0.527) TCGA-44-2656-01 8 134125713 134125713 C A TG Nonsense_Mutation p.Y2540* 0.35 TCGA-44-2656-01 8 139209901 139209901 G A FAM135B Silent p.Y227Y 0.14 TCGA-44-2656-01 8 139824060 139824060 G T COL22A1 Silent p.S477S 0.39 TCGA-44-2656-01 8 139890230 139890230 C G COL22A1 Missense_Mutation p.A141P 0.23 unknown(0) TCGA-44-2656-01 8 143746065 143746065 C G JRK RNA 0.19 TCGA-44-2656-01 8 144992681 144992681 C T PLEC Missense_Mutation p.G3907S 0.60 probably_damaging(1) TCGA-44-2656-01 8 1893703 1893703 C T ARHGEF10 Silent p.S1093S 0.17 TCGA-44-2656-01 8 22005801 22005801 C A LGI3 Nonsense_Mutation p.E507* 0.21 TCGA-44-2656-01 8 22458781 22458781 A T C8orf58 Nonsense_Mutation p.K143* 0.15 TCGA-44-2656-01 8 22868122 22868122 C T RHOBTB2 Silent p.T586T 0.14 TCGA-44-2656-01 8 25744284 25744284 C G EBF2 Missense_Mutation p.R332S 0.19 deleterious(0.03) probably_damaging(0.961) TCGA-44-2656-01 8 27888782 27888782 T C NUGGC Missense_Mutation p.K629R 0.20 tolerated(0.21) benign(0.093) TCGA-44-2656-01 8 27927077 27927077 C T NUGGC Missense_Mutation p.G81R 0.18 deleterious(0.04) possibly_damaging(0.846) TCGA-44-2656-01 8 2966218 2966218 C A CSMD1 Missense_Mutation p.A2221S 0.11 probably_damaging(0.998) TCGA-44-2656-01 8 2967787 2967787 C A CSMD1 Silent p.P2167P 0.21 TCGA-44-2656-01 8 3216722 3216722 G - CSMD1 Frame_Shift_Del p.L1086Wfs*49 0.08 TCGA-44-2656-01 8 55538014 55538014 T G RP1 Missense_Mutation p.D524E 0.09 tolerated(0.78) benign(0.002) TCGA-44-2656-01 8 6338368 6338368 C T MCPH1 Missense_Mutation p.R703C 0.13 deleterious(0) probably_damaging(0.998) TCGA-44-2656-01 8 63998554 63998554 C A TTPA Silent p.S9S 0.35 TCGA-44-2656-01 8 67064862 67064862 G A TRIM55 Silent p.Q412Q 0.25 TCGA-44-2656-01 8 67064863 67064863 G T TRIM55 Splice_Site p.X412_splice 0.24 TCGA-44-2656-01 8 71056877 71056877 C G NCOA2 Missense_Mutation p.G938R 0.08 tolerated(0.08) benign(0.028) TCGA-44-2656-01 8 71512306 71512306 T A TRAM1 Missense_Mutation p.K45N 0.45 tolerated(0.06) benign(0.066) TCGA-44-2656-01 8 72754932 72754932 A T MSC Silent p.V195V 0.39 TCGA-44-2656-01 8 73479952 73479952 G T KCNB2 5'UTR 0.39 TCGA-44-2656-01 8 75932301 75932301 T A CRISPLD1 Missense_Mutation p.S411T 0.07 tolerated(0.76) benign(0.01) TCGA-44-2656-01 8 76472700 76472700 C A HNF4G Silent p.I405I 0.12 TCGA-44-2656-01 8 77690476 77690476 C A ZFHX4 Silent p.P1042P 0.33 TCGA-44-2656-01 8 77766770 77766770 T C ZFHX4 Missense_Mutation p.M2538T 0.14 possibly_damaging(0.884) TCGA-44-2656-01 8 77775904 77775904 G C ZFHX4 Missense_Mutation p.Q3318H 0.39 probably_damaging(0.989) TCGA-44-2656-01 8 87645122 87645122 C A CNGB3 Splice_Site p.X393_splice 0.31 TCGA-44-2656-01 9 100693342 100693342 C A HEMGN Missense_Mutation p.G112V 0.09 tolerated(0.5) benign(0.245) TCGA-44-2656-01 9 101817383 101817383 G T COL15A1 Splice_Site p.X1011_splice 0.10 TCGA-44-2656-01 9 104356802 104356802 G T PPP3R2 Missense_Mutation p.D137E 0.10 deleterious(0) probably_damaging(0.949) TCGA-44-2656-01 9 107288712 107288712 G T OR13C4 Missense_Mutation p.A260E 0.11 tolerated(0.18) possibly_damaging(0.9) TCGA-44-2656-01 9 107289148 107289148 G - OR13C4 Frame_Shift_Del p.G116Afs*2 0.11 TCGA-44-2656-01 9 107361248 107361248 C A OR13C5 Missense_Mutation p.W149C 0.10 deleterious(0) probably_damaging(1) TCGA-44-2656-01 9 107367610 107367610 T A OR13C2 Missense_Mutation p.Q100L 0.12 deleterious(0.01) probably_damaging(0.989) TCGA-44-2656-01 9 107367620 107367620 A T OR13C2 Missense_Mutation p.C97S 0.13 deleterious(0) probably_damaging(0.996) TCGA-44-2656-01 9 108136969 108136969 G T SLC44A1 Missense_Mutation p.V529L 0.29 tolerated(0.36) possibly_damaging(0.737) TCGA-44-2656-01 9 113563158 113563158 C A MUSK Missense_Mutation p.L834I 0.29 deleterious(0) probably_damaging(0.999) TCGA-44-2656-01 9 114538232 114538232 G T C9orf84 Missense_Mutation p.T30N 0.18 tolerated(0.34) possibly_damaging(0.731) TCGA-44-2656-01 9 117027389 117027389 C T COL27A1 Missense_Mutation p.P1113L 0.20 probably_damaging(0.975) TCGA-44-2656-01 9 117166348 117166348 G T DFNB31 Missense_Mutation p.T749K 0.35 deleterious(0.01) possibly_damaging(0.888) TCGA-44-2656-01 9 117826978 117826978 A C TNC Nonsense_Mutation p.Y1145* 0.09 TCGA-44-2656-01 9 122075634 122075634 G T BRINP1 5'UTR 0.33 TCGA-44-2656-01 9 124751501 124751501 C G TTLL11 Silent p.T504T 0.08 TCGA-44-2656-01 9 125281931 125281931 A T OR1J4 Missense_Mutation p.D171V 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.591) TCGA-44-2656-01 9 125315646 125315646 C G OR1N2 Missense_Mutation p.I66M 0.07 deleterious(0) possibly_damaging(0.621) TCGA-44-2656-01 9 126641241 126641241 C A DENND1A Missense_Mutation p.G26V 0.08 tolerated(0.09) benign(0.066) TCGA-44-2656-01 9 129974501 129974501 G T RALGPS1 Missense_Mutation p.G447W 0.08 deleterious(0) probably_damaging(1) TCGA-44-2656-01 9 130073925 130073925 C G GARNL3 Missense_Mutation p.A77G 0.09 tolerated(0.34) benign(0.001) TCGA-44-2656-01 9 130101923 130101923 G A GARNL3 Splice_Site p.X343_splice 0.14 TCGA-44-2656-01 9 130420719 130420719 C G STXBP1 Missense_Mutation p.P79A 0.11 deleterious(0) benign(0.443) TCGA-44-2656-01 9 133914297 133914297 G T LAMC3 Missense_Mutation p.E341D 0.10 deleterious(0.01) possibly_damaging(0.651) TCGA-44-2656-01 9 137623482 137623482 G - COL5A1 Frame_Shift_Del p.A436Rfs*122 0.09 TCGA-44-2656-01 9 137646119 137646119 G T COL5A1 Missense_Mutation p.G592C 0.26 probably_damaging(1) TCGA-44-2656-01 9 137658860 137658860 G T COL5A1 Missense_Mutation p.E716D 0.36 unknown(0) TCGA-44-2656-01 9 139301896 139301896 G A SDCCAG3 Silent p.L174L 0.25 TCGA-44-2656-01 9 139959973 139959973 C T SAPCD2 Splice_Site p.X277_splice 0.09 TCGA-44-2656-01 9 14784421 14784421 C A FREM1 Missense_Mutation p.Q1463H 0.25 tolerated(0.35) benign(0.027) TCGA-44-2656-01 9 15745522 15745522 A C CCDC171 Missense_Mutation p.K855T 0.24 tolerated(0.11) benign(0.036) TCGA-44-2656-01 9 21384955 21384955 C A IFNA2 Missense_Mutation p.G125V 0.09 tolerated(0.25) benign(0.016) TCGA-44-2656-01 9 27556699 27556699 C T C9orf72 Silent p.Q317Q 0.09 TCGA-44-2656-01 9 2820099 2820099 C A KIAA0020 Splice_Site p.X397_splice 0.18 TCGA-44-2656-01 9 32544246 32544246 C G TOPORS Missense_Mutation p.V93L 0.15 tolerated(0.09) benign(0.205) TCGA-44-2656-01 9 32633786 32633786 C A TAF1L Missense_Mutation p.G598C 0.21 deleterious(0) probably_damaging(0.984) TCGA-44-2656-01 9 32633787 32633787 C A TAF1L Missense_Mutation p.Q597H 0.20 tolerated(0.14) benign(0.374) TCGA-44-2656-01 9 35045842 35045842 C A C9orf131 Silent p.P1072P 0.26 TCGA-44-2656-01 9 38414155 38414155 C A IGFBPL1 Missense_Mutation p.G169V 0.13 deleterious(0) probably_damaging(1) TCGA-44-2656-01 9 40702834 40702834 A C SPATA31A3 Missense_Mutation p.D164A 0.11 tolerated(0.41) probably_damaging(0.932) TCGA-44-2656-01 9 40702836 40702836 C T SPATA31A3 Silent p.L165L 0.12 TCGA-44-2656-01 9 80537207 80537207 C A GNAQ Missense_Mutation p.G64V 0.25 deleterious(0) probably_damaging(0.997) TCGA-44-2656-01 9 8460541 8460541 G T PTPRD Missense_Mutation p.P1249T 0.09 tolerated(0.2) benign(0.008) TCGA-44-2656-01 9 86506225 86506225 T A KIF27 Missense_Mutation p.R598S 0.13 tolerated(0.2) benign(0.206) TCGA-44-2656-01 9 86570403 86570403 C A C9orf64 Nonsense_Mutation p.G164* 0.23 TCGA-44-2656-01 9 87636431 87636431 G A NTRK2 3'UTR 0.29 TCGA-44-2656-01 9 94172835 94172835 C A NFIL3 Missense_Mutation p.R61L 0.29 deleterious(0) possibly_damaging(0.728) TCGA-44-2656-01 9 94486955 94486955 G - ROR2 Frame_Shift_Del p.S608Afs*15 0.23 TCGA-44-2656-01 9 95165620 95165620 G T OGN Missense_Mutation p.Q24K 0.26 tolerated(0.27) benign(0.014) TCGA-44-2656-01 9 95165621 95165621 G T OGN Silent p.T23T 0.26 TCGA-44-2656-01 9 96318676 96318676 G T FAM120A Missense_Mutation p.D763Y 0.08 deleterious(0) probably_damaging(0.981) TCGA-44-2656-01 X 100278506 100278506 C T TRMT2B Missense_Mutation p.G237R 0.45 tolerated(0.07) benign(0.216) TCGA-44-2656-01 X 10176257 10176257 G C CLCN4 Missense_Mutation p.G339A 0.09 deleterious(0) probably_damaging(0.997) TCGA-44-2656-01 X 107224574 107224574 G A TEX13B Silent p.L225L 0.18 TCGA-44-2656-01 X 107225113 107225113 T A TEX13B Missense_Mutation p.Q82L 0.50 deleterious(0) probably_damaging(0.987) TCGA-44-2656-01 X 108628501 108628501 A C GUCY2F Silent p.V989V 0.10 TCGA-44-2656-01 X 111698757 111698758 CC A ZCCHC16 Frame_Shift_Del p.P268Qfs*60 0.29 TCGA-44-2656-01 X 111874563 111874563 C A LHFPL1 3'UTR 0.54 TCGA-44-2656-01 X 11187673 11187673 G T ARHGAP6 Silent p.I587I 0.41 TCGA-44-2656-01 X 115593113 115593113 G T CT83 Missense_Mutation p.S46Y 0.41 deleterious(0) benign(0.063) TCGA-44-2656-01 X 118147138 118147138 G T LONRF3 Missense_Mutation p.D650Y 0.39 deleterious(0) probably_damaging(1) TCGA-44-2656-01 X 119512560 119512560 A G ATP1B4 Missense_Mutation p.I282V 0.50 tolerated(0.72) benign(0.177) TCGA-44-2656-01 X 123156495 123156495 A T STAG2 Missense_Mutation p.E6D 0.41 tolerated_low_confidence(0.3) benign(0.004) TCGA-44-2656-01 X 135288623 135288623 G T FHL1 Missense_Mutation p.R11M 0.45 tolerated(0.11) probably_damaging(0.928) TCGA-44-2656-01 X 135429796 135429796 C T GPR112 Nonsense_Mutation p.Q1311* 0.45 TCGA-44-2656-01 X 140995285 140995285 C A MAGEC1 Missense_Mutation p.L699I 0.46 deleterious_low_confidence(0.01) benign(0.364) TCGA-44-2656-01 X 147743879 147743879 G T AFF2 Nonsense_Mutation p.E211* 0.40 TCGA-44-2656-01 X 151131077 151131077 G A GABRE Silent p.Y127Y 0.05 TCGA-44-2656-01 X 151283669 151283669 T A RP11-1007I13.4 RNA 0.11 TCGA-44-2656-01 X 152814180 152814180 G A ATP2B3 Nonsense_Mutation p.W402* 0.12 TCGA-44-2656-01 X 153068740 153068740 T A PDZD4 3'UTR 0.31 TCGA-44-2656-01 X 154490316 154490316 G T RAB39B Silent p.A138A 0.42 TCGA-44-2656-01 X 18209221 18209221 G T BEND2 Silent p.G396G 0.52 TCGA-44-2656-01 X 24597530 24597530 T A PCYT1B Missense_Mutation p.D204V 0.41 deleterious(0) probably_damaging(0.927) TCGA-44-2656-01 X 27999351 27999351 G T DCAF8L1 Missense_Mutation p.A34E 0.49 tolerated_low_confidence(1) benign(0.004) TCGA-44-2656-01 X 3002623 3002623 G C ARSF Missense_Mutation p.R249P 0.40 deleterious(0) probably_damaging(0.999) TCGA-44-2656-01 X 3241316 3241316 A C MXRA5 Missense_Mutation p.L804V 0.06 tolerated(1) benign(0) TCGA-44-2656-01 X 37026967 37026967 G C FAM47C Missense_Mutation p.A162P 0.39 deleterious(0.01) probably_damaging(0.991) TCGA-44-2656-01 X 37027514 37027514 C T FAM47C Missense_Mutation p.P344L 0.38 tolerated(0.24) possibly_damaging(0.747) TCGA-44-2656-01 X 38146246 38146246 C A RPGR Missense_Mutation p.W669L 0.44 benign(0.064) TCGA-44-2656-01 X 38664295 38664295 G A MID1IP1 Silent p.V32V 0.58 TCGA-44-2656-01 X 41043661 41043661 C T USP9X Silent p.A1097A 0.43 TCGA-44-2656-01 X 50350576 50350576 C T SHROOM4 Missense_Mutation p.G1189D 0.09 tolerated(0.26) benign(0.016) TCGA-44-2656-01 X 64139003 64139003 A T ZC4H2 Silent p.A160A 0.53 TCGA-44-2656-01 X 65252542 65252542 C T VSIG4 Silent p.T154T 0.08 TCGA-44-2656-01 X 65417580 65417580 G T HEPH Missense_Mutation p.W573C 0.47 deleterious(0) probably_damaging(1) TCGA-44-2656-01 X 65824892 65824892 G A EDA2R Silent p.P88P 0.50 TCGA-44-2656-01 X 6995465 6995465 C A HDHD1 Silent p.L125L 0.30 TCGA-44-2656-01 X 70443680 70443680 G T GJB1 Missense_Mutation p.E41D 0.38 deleterious(0) probably_damaging(0.996) TCGA-44-2656-01 X 71360426 71360426 G T NHSL2 Missense_Mutation p.V1010L 0.29 deleterious(0.01) benign(0.201) TCGA-44-2656-01 X 73047408 73047408 A G XIST RNA 0.77 TCGA-44-2656-01 X 74520800 74520800 G T UPRT Missense_Mutation p.G275C 0.13 deleterious(0) probably_damaging(1) TCGA-44-2656-01 X 79277847 79277847 C A TBX22 Missense_Mutation p.P27T 0.56 tolerated(0.31) benign(0.003) TCGA-44-2656-01 X 79936970 79936970 T C BRWD3 Silent p.L1508L 0.46 TCGA-44-2656-01 X 85404014 85404014 C A DACH2 Silent p.I130I 0.54 TCGA-44-2657-01 10 11531201 11531201 C A USP6NL Silent p.G205G 0.29 TCGA-44-2657-01 10 116197683 116197683 T A ABLIM1 Missense_Mutation p.I715L 0.18 tolerated(0.07) benign(0.04) TCGA-44-2657-01 10 117823850 117823850 G C GFRA1 3'UTR 0.19 TCGA-44-2657-01 10 118187472 118187472 T C PNLIPRP3 5'UTR 0.15 TCGA-44-2657-01 10 119015006 119015006 G T SLC18A2 Silent p.V269V 0.21 TCGA-44-2657-01 10 128973656 128973656 G C FAM196A Missense_Mutation p.P335R 0.17 deleterious(0.01) probably_damaging(0.951) TCGA-44-2657-01 10 44873999 44873999 C A CXCL12 Intron 0.21 TCGA-44-2657-01 10 6268204 6268204 C T PFKFB3 Missense_Mutation p.P464L 0.14 possibly_damaging(0.813) TCGA-44-2657-01 10 6527124 6527124 C T PRKCQ Silent p.P336P 0.23 TCGA-44-2657-01 10 69881917 69881917 C A MYPN Missense_Mutation p.A241D 0.19 tolerated(0.41) benign(0.282) TCGA-44-2657-01 10 73574861 73574861 C T CDH23 Silent p.L1057L 0.16 TCGA-44-2657-01 10 78704598 78704598 C A KCNMA1 Missense_Mutation p.L928F 0.16 deleterious(0) probably_damaging(1) TCGA-44-2657-01 10 79781687 79781687 C A POLR3A Missense_Mutation p.G327C 0.21 deleterious(0) possibly_damaging(0.703) TCGA-44-2657-01 10 88994213 88994213 G A NUTM2A Silent p.Q795Q 0.24 TCGA-44-2657-01 10 91144500 91144500 G C IFIT1B 3'UTR 0.20 TCGA-44-2657-01 10 98741739 98741739 G C C10orf12 Missense_Mutation p.G198R 0.18 deleterious(0) probably_damaging(1) TCGA-44-2657-01 10 98807553 98807553 C A SLIT1 Missense_Mutation p.D510Y 0.12 deleterious(0) possibly_damaging(0.552) TCGA-44-2657-01 11 105924167 105924167 C - KBTBD3 Frame_Shift_Del p.D417Tfs*6 0.19 TCGA-44-2657-01 11 107578577 107578577 C A SLN Missense_Mutation p.R27M 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.803) TCGA-44-2657-01 11 1080968 1080968 C A MUC2 Missense_Mutation p.A451D 0.11 possibly_damaging(0.863) TCGA-44-2657-01 11 113140761 113140761 T G NCAM1 Intron 0.12 TCGA-44-2657-01 11 113285167 113285167 G T DRD2 Missense_Mutation p.P247H 0.15 tolerated(0.07) benign(0.128) TCGA-44-2657-01 11 113285168 113285168 G T DRD2 Missense_Mutation p.P247T 0.16 tolerated(0.11) benign(0.41) TCGA-44-2657-01 11 125359482 125359482 A G FEZ1 Silent p.N64N 0.16 TCGA-44-2657-01 11 13514017 13514017 C T PTH Missense_Mutation p.E95K 0.13 tolerated(0.37) benign(0.05) TCGA-44-2657-01 11 16872832 16872832 C A PLEKHA7 Missense_Mutation p.R201L 0.15 deleterious(0) possibly_damaging(0.692) TCGA-44-2657-01 11 18740276 18740276 C A IGSF22 Splice_Site p.X233_splice 0.10 TCGA-44-2657-01 11 1908758 1908758 G T LSP1 Nonsense_Mutation p.E457* 0.13 TCGA-44-2657-01 11 34160792 34160792 G T NAT10 Missense_Mutation p.D756Y 0.14 deleterious(0) benign(0.01) TCGA-44-2657-01 11 34478335 34478335 A G CAT Missense_Mutation p.I343V 0.13 tolerated(0.15) benign(0.092) TCGA-44-2657-01 11 4674576 4674576 C T OR51E1 Silent p.L274L 0.14 TCGA-44-2657-01 11 5246739 5246739 C A HBB 3'UTR 0.12 TCGA-44-2657-01 11 5411262 5411262 C T OR51M1 Silent p.L212L 0.19 TCGA-44-2657-01 11 5529464 5529464 G C UBQLN3 Missense_Mutation p.P442R 0.12 deleterious(0.02) benign(0.172) TCGA-44-2657-01 11 55587648 55587648 G A OR5D18 Silent p.E181E 0.11 TCGA-44-2657-01 11 55861246 55861246 A G OR8I2 Missense_Mutation p.S155G 0.10 tolerated(0.14) benign(0.001) TCGA-44-2657-01 11 56380709 56380709 C T OR5M1 Silent p.K90K 0.15 TCGA-44-2657-01 11 57958429 57958429 C A OR9Q2 Missense_Mutation p.A156D 0.15 deleterious(0) probably_damaging(0.968) TCGA-44-2657-01 11 58034470 58034470 C A OR10W1 Missense_Mutation p.E287D 0.10 tolerated(0.42) benign(0.024) TCGA-44-2657-01 11 58170573 58170573 C A OR5B3 Missense_Mutation p.A104S 0.18 tolerated_low_confidence(0.06) benign(0.022) TCGA-44-2657-01 11 59271767 59271767 G T OR4D11 Missense_Mutation p.C240F 0.10 deleterious(0) probably_damaging(1) TCGA-44-2657-01 11 5969145 5969145 G T OR56A3 Missense_Mutation p.R190I 0.11 deleterious(0.03) benign(0.049) TCGA-44-2657-01 11 59807963 59807963 G C OOSP2 Missense_Mutation p.V11L 0.12 tolerated(0.27) unknown(0) TCGA-44-2657-01 11 60197159 60197159 C A MS4A5 Missense_Mutation p.S4R 0.14 tolerated(0.54) benign(0.003) TCGA-44-2657-01 11 60229879 60229879 C A MS4A1 Missense_Mutation p.T11N 0.09 deleterious(0.04) benign(0.01) TCGA-44-2657-01 11 62284435 62284435 C G AHNAK Silent p.G5818G 0.14 TCGA-44-2657-01 11 65270568 65270568 C G MALAT1 RNA 0.21 TCGA-44-2657-01 11 65829421 65829421 A T SF3B2 Silent p.P643P 0.09 TCGA-44-2657-01 11 73686562 73686562 C T UCP2 Silent p.K263K 0.17 TCGA-44-2657-01 11 76834940 76834940 G T CAPN5 3'UTR 0.11 TCGA-44-2657-01 11 7981815 7981815 A G NLRP10 Silent p.S448S 0.14 TCGA-44-2657-01 11 88911297 88911297 T A TYR Missense_Mutation p.L59H 0.18 tolerated(0.2) benign(0.008) TCGA-44-2657-01 11 92533884 92533884 A T FAT3 Missense_Mutation p.S2569C 0.15 possibly_damaging(0.895) TCGA-44-2657-01 11 99932110 99932110 C A CNTN5 Missense_Mutation p.Q383K 0.24 tolerated(0.27) benign(0.37) TCGA-44-2657-01 12 10168296 10168296 G T CLEC12B Missense_Mutation p.W217L 0.23 deleterious(0) probably_damaging(1) TCGA-44-2657-01 12 102131692 102131692 A T SYCP3 Missense_Mutation p.Y8N 0.23 tolerated(0.19) benign(0.002) TCGA-44-2657-01 12 123444365 123444365 C T ABCB9 Missense_Mutation p.V140M 0.21 deleterious(0.03) possibly_damaging(0.858) TCGA-44-2657-01 12 132399719 132399719 G T ULK1 Missense_Mutation p.V489F 0.32 tolerated(0.38) benign(0.122) TCGA-44-2657-01 12 133360732 133360732 C G GOLGA3 Intron 0.12 TCGA-44-2657-01 12 22676358 22676358 A C C2CD5 Splice_Site p.X267_splice 0.10 TCGA-44-2657-01 12 27058465 27058465 C G ASUN Missense_Mutation p.E696Q 0.12 tolerated_low_confidence(0.14) benign(0.329) TCGA-44-2657-01 12 27951196 27951196 G T KLHL42 3'UTR 0.12 TCGA-44-2657-01 12 33031935 33031935 C A PKP2 Missense_Mutation p.E85D 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-44-2657-01 12 40692296 40692296 G T LRRK2 Splice_Site p.X1116_splice 0.15 TCGA-44-2657-01 12 41337888 41337888 C A CNTN1 Silent p.A533A 0.30 TCGA-44-2657-01 12 46245363 46245363 G T ARID2 Missense_Mutation p.G1153C 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-2657-01 12 51685619 51685619 G T BIN2 Missense_Mutation p.A424E 0.04 deleterious_low_confidence(0.01) benign(0.103) TCGA-44-2657-01 12 52841600 52841600 G A KRT6B Silent p.I462I 0.06 TCGA-44-2657-01 12 54943667 54943667 C A PDE1B Missense_Mutation p.S4Y 0.14 deleterious_low_confidence(0.05) possibly_damaging(0.608) TCGA-44-2657-01 12 58007452 58007452 G T ARHGEF25 Intron 0.51 TCGA-44-2657-01 12 63544585 63544585 G T AVPR1A Missense_Mutation p.P11H 0.37 deleterious_low_confidence(0.04) benign(0.376) TCGA-44-2657-01 12 65857182 65857182 T C MSRB3 3'UTR 0.22 TCGA-44-2657-01 13 111132690 111132690 C A COL4A2 Missense_Mutation p.P904H 0.09 benign(0.103) TCGA-44-2657-01 13 113527887 113527887 C G ATP11A Missense_Mutation p.L1020V 0.14 deleterious(0.03) possibly_damaging(0.607) TCGA-44-2657-01 13 114287464 114287464 G A TFDP1 Missense_Mutation p.G113D 0.16 deleterious(0.02) probably_damaging(0.995) TCGA-44-2657-01 13 25029154 25029154 C A PARP4 Splice_Site p.X920_splice 0.11 TCGA-44-2657-01 13 25744119 25744119 G T AMER2 Silent p.R547R 0.11 TCGA-44-2657-01 13 38225593 38225593 G C TRPC4 Missense_Mutation p.H630D 0.06 deleterious(0.04) probably_damaging(0.991) TCGA-44-2657-01 13 52663447 52663447 G T NEK5 Missense_Mutation p.P404H 0.23 tolerated(0.14) possibly_damaging(0.885) TCGA-44-2657-01 13 53422541 53422541 A T PCDH8 Missense_Mutation p.C11S 0.10 tolerated_low_confidence(0.09) benign(0.191) TCGA-44-2657-01 13 53422595 53422595 G T PCDH8 5'UTR 0.12 TCGA-44-2657-01 13 84455027 84455027 C T SLITRK1 Missense_Mutation p.E206K 0.11 deleterious(0) probably_damaging(0.999) TCGA-44-2657-01 13 88327846 88327846 G T SLITRK5 Missense_Mutation p.R68L 0.20 deleterious(0) possibly_damaging(0.509) TCGA-44-2657-01 14 102549392 102549392 T C HSP90AA1 Missense_Mutation p.I700M 0.25 deleterious_low_confidence(0.02) unknown(0) TCGA-44-2657-01 14 102551666 102551666 G A HSP90AA1 Missense_Mutation p.S333F 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-2657-01 14 21458201 21458201 T C METTL17 Missense_Mutation p.W14R 0.19 tolerated_low_confidence(0.05) possibly_damaging(0.812) TCGA-44-2657-01 14 21870599 21870599 G A CHD8 Missense_Mutation p.R1260C 0.05 deleterious(0) benign(0.306) TCGA-44-2657-01 14 23871694 23871694 C - MYH6 Frame_Shift_Del p.A374Rfs*18 0.22 TCGA-44-2657-01 14 26917950 26917950 T A NOVA1 Missense_Mutation p.S247C 0.19 deleterious(0) unknown(0) TCGA-44-2657-01 14 36097026 36097026 G A RALGAPA1 Missense_Mutation p.H1537Y 0.21 deleterious(0) benign(0.247) TCGA-44-2657-01 14 42356876 42356876 A T LRFN5 Nonsense_Mutation p.K350* 0.18 TCGA-44-2657-01 14 51489622 51489622 G T TRIM9 Silent p.I324I 0.07 TCGA-44-2657-01 14 53180639 53180639 G T PSMC6 Missense_Mutation p.R175L 0.13 deleterious(0) possibly_damaging(0.8) TCGA-44-2657-01 14 55310797 55310797 A T GCH1 Missense_Mutation p.L231M 0.09 deleterious(0.04) possibly_damaging(0.691) TCGA-44-2657-01 14 59112403 59112403 G T DACT1 Missense_Mutation p.R354S 0.17 deleterious(0) probably_damaging(0.999) TCGA-44-2657-01 14 64557634 64557634 G T SYNE2 Silent p.V3948V 0.17 TCGA-44-2657-01 14 64591827 64591827 G T SYNE2 Missense_Mutation p.V4485L 0.13 benign(0.103) TCGA-44-2657-01 14 68249881 68249881 T A ZFYVE26 Missense_Mutation p.S1330C 0.09 tolerated(0.08) possibly_damaging(0.518) TCGA-44-2657-01 14 71206733 71206733 C A MAP3K9 Intron 0.14 TCGA-44-2657-01 14 72925085 72925085 G - RGS6 Frame_Shift_Del 0.09 TCGA-44-2657-01 14 73029177 73029177 C T RGS6 3'UTR 0.15 TCGA-44-2657-01 14 75265213 75265213 G T YLPM1 Missense_Mutation p.K1071N 0.15 probably_damaging(0.99) TCGA-44-2657-01 14 95030082 95030082 T C SERPINA4 Missense_Mutation p.M88T 0.15 deleterious(0) possibly_damaging(0.784) TCGA-44-2657-01 15 24921196 24921196 C A NPAP1 Missense_Mutation p.A61E 0.15 deleterious(0.01) benign(0.001) TCGA-44-2657-01 15 28389295 28389295 G A HERC2 Missense_Mutation p.L3743F 0.06 benign(0.001) TCGA-44-2657-01 15 34673801 34673801 C A GOLGA8A Silent p.A541A 0.32 TCGA-44-2657-01 15 42434107 42434107 C T PLA2G4F 3'UTR 0.11 TCGA-44-2657-01 15 51350211 51350211 A T TNFAIP8L3 Missense_Mutation p.I249N 0.17 deleterious(0) probably_damaging(1) TCGA-44-2657-01 15 54914593 54914593 G A UNC13C Missense_Mutation p.G2059R 0.23 deleterious_low_confidence(0.03) possibly_damaging(0.867) TCGA-44-2657-01 15 79063993 79063993 G A ADAMTS7 Silent p.Y770Y 0.09 TCGA-44-2657-01 15 85399864 85399864 G T ALPK3 Missense_Mutation p.R834M 0.16 deleterious_low_confidence(0.02) benign(0.071) TCGA-44-2657-01 16 20331623 20331623 G T GP2 Silent p.T276T 0.09 TCGA-44-2657-01 16 27445722 27445722 G T IL21R Missense_Mutation p.C35F 0.15 deleterious(0) probably_damaging(1) TCGA-44-2657-01 16 28488846 28488846 C T CLN3 Silent p.Q436Q 0.17 TCGA-44-2657-01 16 31384696 31384696 C T ITGAX Silent p.Y831Y 0.17 TCGA-44-2657-01 16 47162416 47162416 G A NETO2 Missense_Mutation p.R101W 0.07 deleterious(0) probably_damaging(0.999) TCGA-44-2657-01 16 49525160 49525160 G T ZNF423 3'UTR 0.16 TCGA-44-2657-01 16 61851398 61851398 G A CDH8 Missense_Mutation p.T421I 0.13 tolerated(0.1) possibly_damaging(0.583) TCGA-44-2657-01 16 72188209 72188209 C A PMFBP1 Missense_Mutation p.Q105H 0.18 deleterious(0) probably_damaging(0.999) TCGA-44-2657-01 16 75681566 75681566 G A KARS 5'Flank 0.12 TCGA-44-2657-01 16 89724600 89724600 C T SPATA33 Intron 0.06 TCGA-44-2657-01 17 11554419 11554419 G T DNAH9 Nonsense_Mutation p.E711* 0.22 TCGA-44-2657-01 17 12666878 12666878 C A MYOCD Missense_Mutation p.P960T 0.15 deleterious(0) probably_damaging(1) TCGA-44-2657-01 17 15499942 15499942 C T RP11-385D13.1 Silent p.T840T 0.08 TCGA-44-2657-01 17 1551212 1551212 G A RILP Silent p.L287L 0.06 TCGA-44-2657-01 17 16347377 16347377 G A FAM211A Missense_Mutation p.S187F 0.14 tolerated(0.71) benign(0.413) TCGA-44-2657-01 17 18150366 18150366 C G FLII Missense_Mutation p.A893P 0.10 deleterious(0) probably_damaging(0.987) TCGA-44-2657-01 17 21826233 21826233 G A FAM27L RNA 0.14 TCGA-44-2657-01 17 26723349 26723349 C T SARM1 3'UTR 0.15 TCGA-44-2657-01 17 2935739 2935739 C T RAP1GAP2 3'UTR 0.11 TCGA-44-2657-01 17 29653005 29653005 G T NF1 Missense_Mutation p.G1668V 0.25 tolerated(0.19) possibly_damaging(0.903) TCGA-44-2657-01 17 30207635 30207635 C A UTP6 Missense_Mutation p.R308S 0.20 deleterious(0.01) possibly_damaging(0.655) TCGA-44-2657-01 17 34072787 34072787 C A GAS2L2 Missense_Mutation p.D577Y 0.22 deleterious(0.01) possibly_damaging(0.635) TCGA-44-2657-01 17 43195505 43195505 C A PLCD3 Missense_Mutation p.R372S 0.14 deleterious(0) probably_damaging(0.999) TCGA-44-2657-01 17 43323891 43323891 C T FMNL1 Silent p.F1077F 0.08 TCGA-44-2657-01 17 5993675 5993675 G C WSCD1 Missense_Mutation p.E193Q 0.11 deleterious(0.05) benign(0.394) TCGA-44-2657-01 17 60765739 60765739 C T MRC2 Silent p.V1012V 0.18 TCGA-44-2657-01 17 61568578 61568578 G T ACE Silent p.T916T 0.22 TCGA-44-2657-01 17 61842180 61842180 C T CCDC47 Missense_Mutation p.D98N 0.11 tolerated(0.1) benign(0.052) TCGA-44-2657-01 17 62049513 62049513 G C SCN4A Silent p.P155P 0.13 TCGA-44-2657-01 17 65340804 65340804 T C PSMD12 Missense_Mutation p.E334G 0.14 tolerated(0.37) benign(0.002) TCGA-44-2657-01 17 78165189 78165189 G T CARD14 Missense_Mutation p.R386L 0.15 deleterious(0) probably_damaging(0.993) TCGA-44-2657-01 17 9674829 9674829 C A DHRS7C Missense_Mutation p.K305N 0.18 tolerated(0.1) benign(0.066) TCGA-44-2657-01 18 19405788 19405788 A G MIB1 Intron 0.19 TCGA-44-2657-01 18 29206276 29206276 T A B4GALT6 Missense_Mutation p.H324L 0.16 deleterious(0.01) possibly_damaging(0.824) TCGA-44-2657-01 18 42530897 42530897 G T SETBP1 Missense_Mutation p.R531M 0.20 deleterious(0) probably_damaging(0.998) TCGA-44-2657-01 18 55103683 55103683 T C ONECUT2 Silent p.S245S 0.14 TCGA-44-2657-01 18 61262397 61262397 C T SERPINB13 Silent p.N250N 0.05 TCGA-44-2657-01 18 70205991 70205991 C A CBLN2 Missense_Mutation p.G125V 0.12 deleterious(0) probably_damaging(1) TCGA-44-2657-01 18 70205992 70205992 C A CBLN2 Missense_Mutation p.G125C 0.12 deleterious(0) probably_damaging(1) TCGA-44-2657-01 18 74962576 74962576 G A GALR1 Silent p.G24G 0.30 TCGA-44-2657-01 19 10220370 10220370 G T PPAN Missense_Mutation p.D193Y 0.32 deleterious(0) probably_damaging(0.982) TCGA-44-2657-01 19 12945975 12945975 G A RTBDN 5'UTR 0.25 TCGA-44-2657-01 19 16060156 16060156 C A OR10H4 Silent p.S113S 0.19 TCGA-44-2657-01 19 16301759 16301759 C T FAM32A Missense_Mutation p.T111M 0.09 deleterious(0.02) benign(0.09) TCGA-44-2657-01 19 17759401 17759401 G T UNC13A Missense_Mutation p.T552K 0.28 deleterious(0.03) probably_damaging(0.988) TCGA-44-2657-01 19 19576209 19576209 C G GATAD2A Missense_Mutation p.P19A 0.16 tolerated(0.75) benign(0.007) TCGA-44-2657-01 19 19655874 19655874 C A CILP2 Missense_Mutation p.D840E 0.22 tolerated(0.1) benign(0.005) TCGA-44-2657-01 19 23159498 23159498 G A ZNF728 Missense_Mutation p.S214L 0.20 deleterious(0.04) benign(0.041) TCGA-44-2657-01 19 3589536 3589536 G T GIPC3 Missense_Mutation p.A230S 0.35 deleterious(0.02) possibly_damaging(0.733) TCGA-44-2657-01 19 36271365 36271365 G C ARHGAP33 Missense_Mutation p.D223H 0.07 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-44-2657-01 19 39075606 39075606 G T RYR1 Silent p.V4890V 0.29 TCGA-44-2657-01 19 39691004 39691004 G C NCCRP1 Silent p.L189L 0.26 TCGA-44-2657-01 19 40580836 40580836 C A ZNF780A Nonsense_Mutation p.E506* 0.22 TCGA-44-2657-01 19 48634422 48634422 C T LIG1 Missense_Mutation p.A578T 0.31 tolerated(0.17) benign(0.155) TCGA-44-2657-01 19 49573799 49573799 G T KCNA7 Missense_Mutation p.L298M 0.21 deleterious(0.03) probably_damaging(0.912) TCGA-44-2657-01 19 51330248 51330248 G T KLK15 Missense_Mutation p.R123S 0.26 deleterious(0.05) benign(0.262) TCGA-44-2657-01 19 52222512 52222512 C A HAS1 Nonsense_Mutation p.E217* 0.10 TCGA-44-2657-01 19 55816254 55816254 G A BRSK1 Silent p.L561L 0.31 TCGA-44-2657-01 19 56203235 56203235 C G EPN1 Missense_Mutation p.S379W 0.07 deleterious(0.01) possibly_damaging(0.672) TCGA-44-2657-01 19 5705941 5705941 G A LONP1 Silent p.I403I 0.21 TCGA-44-2657-01 1 103463891 103463891 C A COL11A1 Missense_Mutation p.G724V 0.15 unknown(0) TCGA-44-2657-01 1 109395169 109395169 C A AKNAD1 Missense_Mutation p.G40C 0.15 tolerated(0.08) benign(0.155) TCGA-44-2657-01 1 110738261 110738261 G T SLC6A17 Nonsense_Mutation p.G516* 0.09 TCGA-44-2657-01 1 110741162 110741162 C A SLC6A17 3'UTR 0.23 TCGA-44-2657-01 1 149871771 149871771 C G BOLA1 Missense_Mutation p.N53K 0.05 deleterious(0) probably_damaging(0.999) TCGA-44-2657-01 1 152277028 152277028 C T FLG Missense_Mutation p.R3445K 0.06 unknown(0) TCGA-44-2657-01 1 152281162 152281162 G T FLG Missense_Mutation p.P2067H 0.16 possibly_damaging(0.893) TCGA-44-2657-01 1 152323527 152323527 G C FLG2 Silent p.S2245S 0.13 TCGA-44-2657-01 1 152331316 152331316 G C FLG2 Missense_Mutation p.F15L 0.12 unknown(0) TCGA-44-2657-01 1 155921320 155921320 G A ARHGEF2 Missense_Mutation p.A738V 0.11 tolerated(1) benign(0.001) TCGA-44-2657-01 1 156877441 156877441 C T PEAR1 Silent p.F228F 0.20 TCGA-44-2657-01 1 156880491 156880491 C A PEAR1 Missense_Mutation p.T636N 0.15 deleterious(0.03) possibly_damaging(0.862) TCGA-44-2657-01 1 157650837 157650837 C G FCRL3 Missense_Mutation p.D631H 0.08 tolerated(0.08) benign(0.04) TCGA-44-2657-01 1 157739662 157739662 C A FCRL2 Missense_Mutation p.V197L 0.08 deleterious(0) possibly_damaging(0.895) TCGA-44-2657-01 1 158325255 158325255 G T CD1E Missense_Mutation p.R174L 0.10 tolerated(0.29) benign(0.002) TCGA-44-2657-01 1 158390597 158390597 C A OR10K2 Silent p.L20L 0.16 TCGA-44-2657-01 1 158609396 158609396 C A SPTA1 Missense_Mutation p.L1652F 0.12 deleterious(0.02) probably_damaging(1) TCGA-44-2657-01 1 158725239 158725239 G T OR6K6 Missense_Mutation p.V212L 0.10 tolerated(0.62) benign(0.107) TCGA-44-2657-01 1 161161242 161161242 C A ADAMTS4 Missense_Mutation p.G734C 0.10 deleterious(0) probably_damaging(0.957) TCGA-44-2657-01 1 162536099 162536099 A T UAP1 Missense_Mutation p.T81S 0.16 tolerated(0.75) benign(0.007) TCGA-44-2657-01 1 163039278 163039278 T A RGS4 Missense_Mutation p.C99S 0.17 deleterious(0.02) benign(0.438) TCGA-44-2657-01 1 163309231 163309231 A G NUF2 Silent p.L190L 0.07 TCGA-44-2657-01 1 16355272 16355272 G A CLCNKA Missense_Mutation p.A329T 0.03 tolerated(0.06) benign(0.104) TCGA-44-2657-01 1 166892002 166892002 T A ILDR2 Missense_Mutation p.S347C 0.10 deleterious(0.04) possibly_damaging(0.664) TCGA-44-2657-01 1 168215927 168215927 G T SFT2D2 3'UTR 0.07 TCGA-44-2657-01 1 168550395 168550395 G T XCL1 Missense_Mutation p.M94I 0.16 tolerated(0.45) benign(0.013) TCGA-44-2657-01 1 169566244 169566244 G T SELP Missense_Mutation p.P626T 0.12 tolerated(0.4) possibly_damaging(0.559) TCGA-44-2657-01 1 175092757 175092757 G A TNN Missense_Mutation p.G958R 0.11 deleterious(0.01) possibly_damaging(0.718) TCGA-44-2657-01 1 175362956 175362956 G T TNR Nonsense_Mutation p.S439* 0.14 TCGA-44-2657-01 1 177001817 177001817 G T ASTN1 Silent p.R214R 0.11 TCGA-44-2657-01 1 179562680 179562680 G T TDRD5 Missense_Mutation p.K106N 0.20 deleterious(0) possibly_damaging(0.568) TCGA-44-2657-01 1 186276759 186276759 C A PRG4 Silent p.T636T 0.21 TCGA-44-2657-01 1 190067913 190067913 G T BRINP3 Silent p.A512A 0.16 TCGA-44-2657-01 1 192613472 192613472 G T RGS13 Missense_Mutation p.R3M 0.14 tolerated_low_confidence(0.07) benign(0.293) TCGA-44-2657-01 1 196621179 196621179 C A CFH 5'UTR 0.09 TCGA-44-2657-01 1 201195156 201195156 G T IGFN1 Missense_Mutation p.G3564V 0.18 probably_damaging(1) TCGA-44-2657-01 1 206239421 206239421 A T C1orf186 Silent p.P159P 0.24 TCGA-44-2657-01 1 215792539 215792539 C T KCTD3 Nonsense_Mutation p.Q598* 0.04 TCGA-44-2657-01 1 216011423 216011423 G T USH2A Missense_Mutation p.A3094D 0.10 possibly_damaging(0.607) TCGA-44-2657-01 1 222717000 222717000 G T HHIPL2 Missense_Mutation p.H285N 0.11 tolerated(0.57) benign(0.003) TCGA-44-2657-01 1 228466474 228466474 G T OBSCN Missense_Mutation p.R2744L 0.16 probably_damaging(0.999) TCGA-44-2657-01 1 228548137 228548137 T C OBSCN Intron 0.17 TCGA-44-2657-01 1 22986035 22986035 T G C1QB Missense_Mutation p.L29R 0.10 tolerated(0.67) benign(0) TCGA-44-2657-01 1 236187423 236187423 T A NID1 Missense_Mutation p.Q692L 0.11 deleterious(0.01) benign(0.04) TCGA-44-2657-01 1 237550607 237550607 A T RYR2 Missense_Mutation p.L201F 0.08 benign(0.039) TCGA-44-2657-01 1 237659975 237659975 G C RYR2 Missense_Mutation p.G709A 0.12 probably_damaging(1) TCGA-44-2657-01 1 237794761 237794761 C A RYR2 Missense_Mutation p.P2159T 0.20 probably_damaging(1) TCGA-44-2657-01 1 237794762 237794762 C G RYR2 Missense_Mutation p.P2159R 0.20 probably_damaging(1) TCGA-44-2657-01 1 248616384 248616384 C T OR2T2 Silent p.L96L 0.06 TCGA-44-2657-01 1 248737364 248737364 C A OR2T34 Missense_Mutation p.R232M 0.16 deleterious(0) possibly_damaging(0.905) TCGA-44-2657-01 1 248790155 248790155 A C OR2T11 Missense_Mutation p.V92G 0.16 tolerated(0.25) benign(0.133) TCGA-44-2657-01 1 2938177 2938177 C A ACTRT2 5'UTR 0.40 TCGA-44-2657-01 1 35370069 35370069 C A DLGAP3 Missense_Mutation p.G306C 0.42 deleterious(0) possibly_damaging(0.707) TCGA-44-2657-01 1 39945556 39945556 G T MACF1 Missense_Mutation p.G5261C 0.38 probably_damaging(0.998) TCGA-44-2657-01 1 43638419 43638419 G C WDR65 5'UTR 0.06 TCGA-44-2657-01 1 43918609 43918609 G A HYI Intron 0.15 TCGA-44-2657-01 1 55474212 55474212 G A BSND Missense_Mutation p.E292K 0.08 deleterious(0) possibly_damaging(0.779) TCGA-44-2657-01 1 55566576 55566576 T A USP24 Missense_Mutation p.Q1736L 0.11 deleterious(0) probably_damaging(1) TCGA-44-2657-01 1 57209875 57209875 A G C1orf168 Silent p.S484S 0.11 TCGA-44-2657-01 1 57219534 57219534 G - C1orf168 Frame_Shift_Del p.P402Hfs*9 0.22 TCGA-44-2657-01 1 57756646 57756646 G T DAB1 Silent p.S19S 0.17 TCGA-44-2657-01 1 6215656 6215656 C A CHD5 Intron 0.39 TCGA-44-2657-01 1 67685289 67685289 G T IL23R Silent p.V277V 0.26 TCGA-44-2657-01 1 70339161 70339161 C A LRRC7 Intron 0.21 TCGA-44-2657-01 1 87012771 87012771 A C CLCA4 5'UTR 0.07 TCGA-44-2657-01 1 89730452 89730452 T C GBP5 Missense_Mutation p.R356G 0.19 tolerated(0.17) benign(0.012) TCGA-44-2657-01 1 9801204 9801204 C A CLSTN1 Silent p.P489P 0.18 TCGA-44-2657-01 20 11903469 11903469 C T BTBD3 Nonsense_Mutation p.Q242* 0.17 TCGA-44-2657-01 20 18022316 18022317 CA - OVOL2 Frame_Shift_Del p.C124Wfs*58 0.17 TCGA-44-2657-01 20 2636619 2636619 A - NOP56 Frame_Shift_Del p.N317Tfs*23 0.24 TCGA-44-2657-01 20 35060939 35060939 C A DLGAP4 Silent p.P273P 0.29 TCGA-44-2657-01 20 35632118 35632118 C A RBL1 Missense_Mutation p.G1008V 0.13 tolerated(0.11) probably_damaging(0.969) TCGA-44-2657-01 20 35632119 35632119 C A RBL1 Missense_Mutation p.G1008C 0.13 deleterious(0.02) probably_damaging(0.988) TCGA-44-2657-01 20 35737068 35737068 C A MROH8 Splice_Site p.X999_splice 0.16 TCGA-44-2657-01 20 36869629 36869629 A C KIAA1755 Missense_Mutation p.S302A 0.05 tolerated(0.51) benign(0.021) TCGA-44-2657-01 20 37353584 37353584 G A SLC32A1 Missense_Mutation p.E73K 0.12 tolerated(0.43) benign(0.003) TCGA-44-2657-01 20 42340215 42340215 C T MYBL2 Missense_Mutation p.P565S 0.17 tolerated(0.12) possibly_damaging(0.609) TCGA-44-2657-01 20 42815297 42815297 C A JPH2 Missense_Mutation p.G17C 0.20 deleterious(0) probably_damaging(1) TCGA-44-2657-01 20 43353577 43353577 C A WISP2 Missense_Mutation p.P159H 0.17 deleterious(0.01) benign(0.314) TCGA-44-2657-01 20 43851907 43851907 G T SEMG2 Missense_Mutation p.R545I 0.15 deleterious(0) benign(0.099) TCGA-44-2657-01 20 49626462 49626462 C A KCNG1 Silent p.L138L 0.13 TCGA-44-2657-01 20 49626477 49626477 C A KCNG1 Silent p.A133A 0.12 TCGA-44-2657-01 20 51872757 51872757 C T TSHZ2 Silent p.D920D 0.17 TCGA-44-2657-01 20 61907501 61907501 G - ARFGAP1 Frame_Shift_Del p.W40* 0.09 TCGA-44-2657-01 20 62612636 62612636 C T PRPF6 Missense_Mutation p.A13V 0.25 deleterious(0.01) probably_damaging(0.986) TCGA-44-2657-01 20 9416206 9416206 G T PLCB4 Splice_Site p.X830_splice 0.10 TCGA-44-2657-01 20 9523281 9523281 C A PAK7 Missense_Mutation p.M652I 0.13 deleterious(0) probably_damaging(0.968) TCGA-44-2657-01 21 11098888 11098888 G T BAGE2 RNA 0.13 TCGA-44-2657-01 21 27945240 27945240 G T CYYR1 Missense_Mutation p.P7H 0.12 deleterious_low_confidence(0.02) probably_damaging(0.971) TCGA-44-2657-01 21 30934151 30934151 T A GRIK1 Missense_Mutation p.Y717F 0.11 tolerated(0.21) probably_damaging(0.997) TCGA-44-2657-01 21 37429497 37429497 C A SETD4 Nonsense_Mutation p.E27* 0.15 TCGA-44-2657-01 21 41165524 41165524 G A IGSF5 Missense_Mutation p.C371Y 0.12 tolerated(1) benign(0.003) TCGA-44-2657-01 21 45730918 45730918 G A PFKL Silent p.E63E 0.11 TCGA-44-2657-01 21 45825813 45825813 G T TRPM2 Missense_Mutation p.G895W 0.18 deleterious(0) probably_damaging(0.997) TCGA-44-2657-01 21 46686069 46686069 C A POFUT2 Intron 0.12 TCGA-44-2657-01 21 47976893 47976893 G C DIP2A Missense_Mutation p.K1180N 0.44 deleterious(0.01) benign(0.276) TCGA-44-2657-01 22 18300618 18300618 G A MICAL3 Silent p.S1603S 0.15 TCGA-44-2657-01 22 18301586 18301586 G A MICAL3 Missense_Mutation p.R1281C 0.13 benign(0.001) TCGA-44-2657-01 22 19365548 19365548 C A HIRA Missense_Mutation p.G486V 0.07 deleterious(0.01) possibly_damaging(0.698) TCGA-44-2657-01 22 19365549 19365549 C A HIRA Missense_Mutation p.G486C 0.07 deleterious(0.01) possibly_damaging(0.906) TCGA-44-2657-01 22 25121445 25121445 C G PIWIL3 Missense_Mutation p.E692Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-44-2657-01 22 26164338 26164338 A T MYO18B Missense_Mutation p.D152V 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-2657-01 22 26706764 26706764 A T SEZ6L Missense_Mutation p.Q548L 0.09 tolerated(0.21) benign(0.008) TCGA-44-2657-01 22 30691010 30691010 T A TBC1D10A Missense_Mutation p.T194S 0.13 tolerated(0.19) benign(0.23) TCGA-44-2657-01 22 38121216 38121216 C T TRIOBP Missense_Mutation p.R885C 0.04 deleterious_low_confidence(0.03) benign(0.016) TCGA-44-2657-01 22 40055839 40055839 G T CACNA1I Silent p.V862V 0.11 TCGA-44-2657-01 22 50277987 50277987 C G ZBED4 Missense_Mutation p.S226C 0.13 tolerated(0.06) benign(0.01) TCGA-44-2657-01 2 103311549 103311549 G C SLC9A2 Missense_Mutation p.W521C 0.05 deleterious(0) possibly_damaging(0.885) TCGA-44-2657-01 2 108998221 108998221 C A SULT1C4 Missense_Mutation p.T58K 0.17 deleterious(0) probably_damaging(0.991) TCGA-44-2657-01 2 113299993 113299993 G T POLR1B 5'UTR 0.16 TCGA-44-2657-01 2 113785526 113785526 C A IL36B Intron 0.19 TCGA-44-2657-01 2 125660630 125660630 T C CNTNAP5 Missense_Mutation p.M1202T 0.13 tolerated(0.59) benign(0.001) TCGA-44-2657-01 2 145157678 145157678 G C ZEB2 Missense_Mutation p.S359C 0.22 deleterious(0.02) probably_damaging(0.95) TCGA-44-2657-01 2 152387542 152387542 A T NEB Missense_Mutation p.L7199Q 0.14 possibly_damaging(0.687) TCGA-44-2657-01 2 158181913 158181913 C A ERMN Splice_Site p.X94_splice 0.11 TCGA-44-2657-01 2 163133444 163133444 A G IFIH1 Missense_Mutation p.M686T 0.14 tolerated(0.35) benign(0.007) TCGA-44-2657-01 2 163230172 163230172 C A KCNH7 Missense_Mutation p.R1044S 0.13 deleterious(0.02) possibly_damaging(0.725) TCGA-44-2657-01 2 168106328 168106328 G T XIRP2 Missense_Mutation p.G2809V 0.20 benign(0.076) TCGA-44-2657-01 2 176981545 176981545 T A HOXD10 5'UTR 0.17 TCGA-44-2657-01 2 183053786 183053786 C A PDE1A Missense_Mutation p.G392V 0.14 deleterious(0) probably_damaging(1) TCGA-44-2657-01 2 189406035 189406035 G T GULP1 Missense_Mutation p.S130I 0.11 deleterious(0) probably_damaging(0.986) TCGA-44-2657-01 2 207527706 207527706 T C DYTN Silent p.R518R 0.06 TCGA-44-2657-01 2 211527847 211527847 G T CPS1 Missense_Mutation p.A1316S 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-44-2657-01 2 21255418 21255418 T G APOB Missense_Mutation p.Q387P 0.18 possibly_damaging(0.708) TCGA-44-2657-01 2 21255419 21255419 G T APOB Missense_Mutation p.Q387K 0.16 benign(0.132) TCGA-44-2657-01 2 219495489 219495489 G A PLCD4 Silent p.L412L 0.10 TCGA-44-2657-01 2 219553476 219553476 G T STK36 Silent p.L479L 0.13 TCGA-44-2657-01 2 219679287 219679287 A T CYP27A1 Missense_Mutation p.H428L 0.16 deleterious(0) probably_damaging(0.945) TCGA-44-2657-01 2 219896345 219896345 C T CCDC108 Silent p.A227A 0.17 TCGA-44-2657-01 2 225688308 225688308 G T DOCK10 Silent p.V1031V 0.15 TCGA-44-2657-01 2 228552161 228552161 C A SLC19A3 Silent p.V481V 0.17 TCGA-44-2657-01 2 234545440 234545440 T A UGT1A10 Missense_Mutation p.M91K 0.15 tolerated(1) benign(0.001) TCGA-44-2657-01 2 239013434 239013434 C G ESPNL Missense_Mutation p.A208G 0.27 tolerated(0.29) benign(0.015) TCGA-44-2657-01 2 26587740 26587740 C T EPT1 Missense_Mutation p.S56F 0.20 tolerated(0.11) probably_damaging(0.966) TCGA-44-2657-01 2 3750170 3750170 G A ALLC 3'UTR 0.20 TCGA-44-2657-01 2 63824683 63824683 A G MDH1 Missense_Mutation p.D135G 0.06 tolerated(0.05) benign(0.181) TCGA-44-2657-01 2 67630780 67630780 G A ETAA1 Silent p.E322E 0.04 TCGA-44-2657-01 2 69093486 69093486 C A BMP10 Silent p.L184L 0.12 TCGA-44-2657-01 2 69206066 69206066 G T GKN1 Missense_Mutation p.V104F 0.17 deleterious(0.02) probably_damaging(0.975) TCGA-44-2657-01 2 71592757 71592757 G T ZNF638 Missense_Mutation p.C639F 0.23 tolerated(0.65) benign(0.004) TCGA-44-2657-01 2 79314006 79314006 C A REG1B Missense_Mutation p.G39C 0.19 deleterious(0.03) probably_damaging(0.916) TCGA-44-2657-01 2 79385822 79385822 G C REG3A Missense_Mutation p.H50Q 0.07 deleterious(0.02) possibly_damaging(0.487) TCGA-44-2657-01 2 85533621 85533621 C T TCF7L1 Missense_Mutation p.A399V 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-44-2657-01 2 97217674 97217674 A T ARID5A Missense_Mutation p.D470V 0.24 deleterious(0) possibly_damaging(0.851) TCGA-44-2657-01 3 101540843 101540843 C T NXPE3 3'UTR 0.26 TCGA-44-2657-01 3 107096514 107096514 C A CCDC54 Missense_Mutation p.S27Y 0.22 deleterious(0.05) probably_damaging(0.943) TCGA-44-2657-01 3 111343207 111343207 G T CD96 Missense_Mutation p.G442V 0.22 deleterious(0.04) benign(0.255) TCGA-44-2657-01 3 113858370 113858370 C A DRD3 Missense_Mutation p.V234F 0.20 tolerated(0.15) benign(0.272) TCGA-44-2657-01 3 120122105 120122105 G T FSTL1 Missense_Mutation p.F226L 0.09 deleterious(0.01) possibly_damaging(0.73) TCGA-44-2657-01 3 123419703 123419703 C A MYLK Missense_Mutation p.G871V 0.18 deleterious(0) benign(0.007) TCGA-44-2657-01 3 130463491 130463491 C A PIK3R4 Missense_Mutation p.R191L 0.11 deleterious(0) possibly_damaging(0.885) TCGA-44-2657-01 3 137843529 137843529 G T A4GNT Missense_Mutation p.H200Q 0.09 tolerated(0.14) benign(0.019) TCGA-44-2657-01 3 138738865 138738865 G T PRR23B Silent p.P213P 0.04 TCGA-44-2657-01 3 141671484 141671484 G A TFDP2 Silent p.F404F 0.12 TCGA-44-2657-01 3 148586769 148586769 G A CPA3 Missense_Mutation p.S71N 0.09 tolerated(0.48) benign(0.015) TCGA-44-2657-01 3 150645698 150645698 G T CLRN1 3'Flank 0.13 TCGA-44-2657-01 3 164710138 164710138 C A SI Missense_Mutation p.W1630L 0.11 tolerated(0.45) benign(0.107) TCGA-44-2657-01 3 167051729 167051729 C G ZBBX Missense_Mutation p.Q191H 0.12 tolerated(0.09) possibly_damaging(0.631) TCGA-44-2657-01 3 170219103 170219103 G A SLC7A14 Silent p.V112V 0.12 TCGA-44-2657-01 3 180685989 180685989 C T FXR1 Missense_Mutation p.S450L 0.22 tolerated(0.11) benign(0.257) TCGA-44-2657-01 3 183773977 183773977 C A HTR3C Missense_Mutation p.P98T 0.08 deleterious(0.02) benign(0.314) TCGA-44-2657-01 3 187387015 187387015 C T SST Silent p.T63T 0.10 TCGA-44-2657-01 3 196388131 196388131 G T NRROS Missense_Mutation p.R539S 0.10 tolerated(0.57) benign(0.345) TCGA-44-2657-01 3 3111826 3111826 C G IL5RA 3'UTR 0.08 TCGA-44-2657-01 3 36779841 36779841 G T DCLK3 Missense_Mutation p.P104T 0.08 tolerated(0.16) benign(0.039) TCGA-44-2657-01 3 38764936 38764936 C A SCN10A Missense_Mutation p.D1113Y 0.11 deleterious(0.01) possibly_damaging(0.853) TCGA-44-2657-01 3 440019 440019 G T CHL1 Missense_Mutation p.W1068C 0.10 deleterious(0.05) probably_damaging(0.959) TCGA-44-2657-01 3 44489616 44489616 C G ZNF445 Missense_Mutation p.R516T 0.06 deleterious(0.01) possibly_damaging(0.537) TCGA-44-2657-01 3 44611702 44611702 C G ZKSCAN7 Missense_Mutation p.S367C 0.10 deleterious(0.02) possibly_damaging(0.765) TCGA-44-2657-01 3 44943081 44943081 A C TGM4 Silent p.T241T 0.11 TCGA-44-2657-01 3 46006595 46006595 C A FYCO1 Missense_Mutation p.S1027I 0.07 deleterious(0.04) benign(0.203) TCGA-44-2657-01 3 46023127 46023127 C A FYCO1 Nonsense_Mutation p.E33* 0.09 TCGA-44-2657-01 3 46485038 46485038 C A LTF Missense_Mutation p.D517Y 0.08 deleterious(0.01) benign(0.371) TCGA-44-2657-01 3 48955706 48955706 C A ARIH2OS 3'UTR 0.11 TCGA-44-2657-01 3 53160012 53160012 T A RFT1 Splice_Site p.X22_splice 0.14 TCGA-44-2657-01 3 86996060 86996060 T G VGLL3 3'UTR 0.14 TCGA-44-2657-01 3 89445045 89445045 G C EPHA3 Missense_Mutation p.L455F 0.17 deleterious(0) probably_damaging(0.999) TCGA-44-2657-01 4 100129927 100129927 G C ADH6 Silent p.L242L 0.16 TCGA-44-2657-01 4 100239987 100239987 C A ADH1B Missense_Mutation p.E25D 0.15 deleterious(0) probably_damaging(0.994) TCGA-44-2657-01 4 10492234 10492234 A G CLNK Missense_Mutation p.F382L 0.17 deleterious(0) probably_damaging(0.996) TCGA-44-2657-01 4 113506721 113506721 C A C4orf21 Missense_Mutation p.M1359I 0.14 deleterious(0.01) possibly_damaging(0.769) TCGA-44-2657-01 4 115997479 115997479 T C NDST4 Silent p.L238L 0.14 TCGA-44-2657-01 4 126372425 126372425 A T FAT4 Silent p.P3418P 0.14 TCGA-44-2657-01 4 128996092 128996092 A G LARP1B 5'UTR 0.17 TCGA-44-2657-01 4 134071779 134071779 A T PCDH10 Missense_Mutation p.T162S 0.12 tolerated(1) benign(0.403) TCGA-44-2657-01 4 146601435 146601435 G C C4orf51 Missense_Mutation p.R27T 0.15 deleterious(0) probably_damaging(0.991) TCGA-44-2657-01 4 151792559 151792559 C A LRBA Missense_Mutation p.A769S 0.15 tolerated(0.16) benign(0.023) TCGA-44-2657-01 4 155533848 155533848 G T FGG 5'Flank 0.19 TCGA-44-2657-01 4 166231704 166231704 G T KLHL2 Splice_Site p.X351_splice 0.16 TCGA-44-2657-01 4 169201524 169201524 C A DDX60 Missense_Mutation p.C647F 0.09 deleterious(0.01) possibly_damaging(0.774) TCGA-44-2657-01 4 175636673 175636673 C A GLRA3 Missense_Mutation p.M180I 0.08 deleterious(0.01) probably_damaging(0.968) TCGA-44-2657-01 4 187538323 187538323 T C FAT1 Missense_Mutation p.T2971A 0.18 benign(0.001) TCGA-44-2657-01 4 39116892 39116892 G T KLHL5 Missense_Mutation p.G718V 0.09 deleterious(0) probably_damaging(0.996) TCGA-44-2657-01 4 44177010 44177010 G A KCTD8 Missense_Mutation p.R407C 0.14 deleterious(0.04) probably_damaging(0.985) TCGA-44-2657-01 4 54232058 54232058 C A SCFD2 Silent p.V17V 0.17 TCGA-44-2657-01 4 62758472 62758472 G T LPHN3 Missense_Mutation p.V459L 0.14 tolerated(0.79) benign(0) TCGA-44-2657-01 4 77680773 77680773 G A SHROOM3 Silent p.E1758E 0.11 TCGA-44-2657-01 4 79207579 79207579 A T FRAS1 Missense_Mutation p.T474S 0.13 benign(0.035) TCGA-44-2657-01 4 87808958 87808958 C G C4orf36 Silent p.L103L 0.16 TCGA-44-2657-01 5 1264701 1264701 C A TERT Silent p.L887L 0.12 TCGA-44-2657-01 5 128321030 128321030 G A SLC27A6 Splice_Site p.X229_splice 0.20 TCGA-44-2657-01 5 137346774 137346774 G A FAM13B Silent p.L205L 0.11 TCGA-44-2657-01 5 137488440 137488440 C G BRD8 Missense_Mutation p.E863Q 0.18 tolerated_low_confidence(0.27) benign(0.018) TCGA-44-2657-01 5 138714949 138714949 G A SLC23A1 Silent p.Y344Y 0.18 TCGA-44-2657-01 5 140209948 140209948 G T PCDHA6 Missense_Mutation p.V758L 0.18 tolerated_low_confidence(0.13) benign(0.199) TCGA-44-2657-01 5 140242795 140242795 G A AC005609.1 Silent p.L61L 0.09 TCGA-44-2657-01 5 140503451 140503451 G T PCDHB4 Missense_Mutation p.R624L 0.16 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-44-2657-01 5 140553151 140553151 G A PCDHB7 Silent p.S245S 0.15 TCGA-44-2657-01 5 140557914 140557914 C T PCDHB8 Missense_Mutation p.T100I 0.06 tolerated_low_confidence(0.1) benign(0.033) TCGA-44-2657-01 5 140573608 140573608 G T PCDHB10 Missense_Mutation p.D495Y 0.06 deleterious_low_confidence(0) probably_damaging(0.949) TCGA-44-2657-01 5 140588987 140588987 T C PCDHB12 Missense_Mutation p.Y170H 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-2657-01 5 140594338 140594338 G T PCDHB13 Missense_Mutation p.A215S 0.17 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-44-2657-01 5 140783119 140783120 GG A PCDHGA9 Frame_Shift_Del p.D201Tfs*30 0.26 TCGA-44-2657-01 5 140869878 140869878 C A PCDHGC5 Missense_Mutation p.N357K 0.15 tolerated(0.33) possibly_damaging(0.781) TCGA-44-2657-01 5 147040887 147040887 T C JAKMIP2 Missense_Mutation p.E84G 0.17 deleterious(0) probably_damaging(0.979) TCGA-44-2657-01 5 150923860 150923860 G T FAT2 Silent p.V2276V 0.16 TCGA-44-2657-01 5 169535126 169535126 G C FOXI1 Missense_Mutation p.R216S 0.10 deleterious(0) probably_damaging(0.999) TCGA-44-2657-01 5 170819801 170819801 G A NPM1 Missense_Mutation p.G147D 0.07 tolerated(0.11) benign(0.072) TCGA-44-2657-01 5 171479999 171479999 C A STK10 Missense_Mutation p.K900N 0.22 deleterious(0) probably_damaging(0.991) TCGA-44-2657-01 5 171766609 171766609 T A SH3PXD2B Silent p.S500S 0.17 TCGA-44-2657-01 5 176308746 176308746 C T HK3 Silent p.Q780Q 0.16 TCGA-44-2657-01 5 180048156 180048156 G T FLT4 Missense_Mutation p.A706E 0.11 tolerated(1) benign(0.006) TCGA-44-2657-01 5 180416006 180416006 G T BTNL3 5'UTR 0.28 TCGA-44-2657-01 5 23509208 23509208 C A PRDM9 Silent p.P22P 0.25 TCGA-44-2657-01 5 24491831 24491831 C T CDH10 Missense_Mutation p.S577N 0.07 deleterious(0) probably_damaging(0.95) TCGA-44-2657-01 5 26881265 26881265 C A CDH9 Missense_Mutation p.D784Y 0.16 deleterious(0.04) possibly_damaging(0.671) TCGA-44-2657-01 5 32089086 32089086 C T PDZD2 Silent p.G1844G 0.15 TCGA-44-2657-01 5 32712141 32712141 G T NPR3 Missense_Mutation p.G87W 0.19 tolerated(0.17) possibly_damaging(0.868) TCGA-44-2657-01 5 35659145 35659145 A T SPEF2 Missense_Mutation p.I335F 0.16 deleterious(0) possibly_damaging(0.447) TCGA-44-2657-01 5 5146362 5146362 C A ADAMTS16 Missense_Mutation p.L99I 0.31 tolerated(0.09) possibly_damaging(0.792) TCGA-44-2657-01 5 55212479 55212479 T A IL31RA Missense_Mutation p.L609Q 0.15 tolerated(0.07) benign(0.228) TCGA-44-2657-01 5 66492491 66492491 G A CD180 5'UTR 0.14 TCGA-44-2657-01 5 79617271 79617271 C A SPZ1 Missense_Mutation p.H413N 0.14 tolerated(0.11) possibly_damaging(0.6) TCGA-44-2657-01 6 109798052 109798052 G C ZBTB24 Missense_Mutation p.T345R 0.14 tolerated(0.05) benign(0.35) TCGA-44-2657-01 6 110763908 110763908 C A SLC22A16 Missense_Mutation p.W241L 0.21 deleterious(0) probably_damaging(0.99) TCGA-44-2657-01 6 151669913 151669913 G A AKAP12 Silent p.A129A 0.09 TCGA-44-2657-01 6 159028287 159028287 G C TMEM181 Silent p.A332A 0.15 TCGA-44-2657-01 6 160864687 160864687 G T SLC22A3 Missense_Mutation p.G475C 0.09 deleterious(0) probably_damaging(0.992) TCGA-44-2657-01 6 161575121 161575121 G A AGPAT4 Intron 0.12 TCGA-44-2657-01 6 170887973 170887973 C G PDCD2 Missense_Mutation p.C283S 0.06 deleterious(0) probably_damaging(0.999) TCGA-44-2657-01 6 27835222 27835222 G C HIST1H1B Missense_Mutation p.A29G 0.06 tolerated(0.49) unknown(0) TCGA-44-2657-01 6 31597577 31597577 G T PRRC2A Missense_Mutation p.G737C 0.13 probably_damaging(0.965) TCGA-44-2657-01 6 31612763 31612763 C T BAG6 Silent p.Q449Q 0.06 TCGA-44-2657-01 6 33995926 33995926 G T GRM4 Missense_Mutation p.S887Y 0.16 deleterious_low_confidence(0) benign(0.309) TCGA-44-2657-01 6 348228 348228 G A DUSP22 Missense_Mutation p.G130D 0.05 deleterious(0) probably_damaging(0.996) TCGA-44-2657-01 6 36198206 36198206 G T BRPF3 Missense_Mutation p.Q1146H 0.11 deleterious(0) probably_damaging(0.999) TCGA-44-2657-01 6 38843557 38843557 C A DNAH8 Missense_Mutation p.P2387H 0.18 benign(0.001) TCGA-44-2657-01 6 43020118 43020118 G C CUL7 Missense_Mutation p.L189V 0.14 tolerated(0.63) benign(0.175) TCGA-44-2657-01 6 46826344 46826344 C A GPR116 Missense_Mutation p.S1099I 0.09 deleterious(0.04) probably_damaging(0.962) TCGA-44-2657-01 6 47251938 47251938 G C TNFRSF21 Missense_Mutation p.P327A 0.11 tolerated(0.12) benign(0.003) TCGA-44-2657-01 6 52993667 52993667 A T GCM1 Silent p.G216G 0.17 TCGA-44-2657-01 6 55638990 55638990 T C BMP5 Missense_Mutation p.Q295R 0.15 tolerated(1) benign(0.027) TCGA-44-2657-01 6 70034795 70034795 A T BAI3 Missense_Mutation p.H949L 0.19 deleterious(0) probably_damaging(0.996) TCGA-44-2657-01 6 96651063 96651063 C A FUT9 Missense_Mutation p.P11Q 0.05 tolerated(0.39) possibly_damaging(0.609) TCGA-44-2657-01 7 100680394 100680394 C A MUC17 Silent p.T1899T 0.12 TCGA-44-2657-01 7 100680395 100680395 A C MUC17 Missense_Mutation p.T1900P 0.12 possibly_damaging(0.507) TCGA-44-2657-01 7 100683336 100683336 C A MUC17 Missense_Mutation p.P2880Q 0.25 probably_damaging(0.91) TCGA-44-2657-01 7 100683920 100683920 A T MUC17 Missense_Mutation p.S3075C 0.30 possibly_damaging(0.688) TCGA-44-2657-01 7 100685523 100685523 C A MUC17 Missense_Mutation p.T3609N 0.12 benign(0.002) TCGA-44-2657-01 7 100958530 100958530 G C RABL5 Nonsense_Mutation p.S148* 0.09 TCGA-44-2657-01 7 106509707 106509707 C T PIK3CG Silent p.L567L 0.20 TCGA-44-2657-01 7 116340082 116340082 A G MET Missense_Mutation p.N315S 0.14 deleterious(0) probably_damaging(0.994) TCGA-44-2657-01 7 123254559 123254559 G T ASB15 Translation_Start_Site p.M1? 0.16 deleterious_low_confidence(0) possibly_damaging(0.532) TCGA-44-2657-01 7 128477288 128477288 G T FLNC Missense_Mutation p.D226Y 0.24 deleterious(0) probably_damaging(1) TCGA-44-2657-01 7 131872244 131872244 G T PLXNA4 Silent p.P993P 0.13 TCGA-44-2657-01 7 142124226 142124226 G A TRBV6-8 Silent p.V84V 0.12 TCGA-44-2657-01 7 142659359 142659359 G T KEL 5'UTR 0.14 TCGA-44-2657-01 7 146818215 146818215 G T CNTNAP2 Missense_Mutation p.R300L 0.16 deleterious(0.02) benign(0.329) TCGA-44-2657-01 7 151874497 151874497 G C KMT2C Missense_Mutation p.P2681A 0.10 benign(0.003) TCGA-44-2657-01 7 151960177 151960177 G A KMT2C Missense_Mutation p.T408M 0.17 probably_damaging(1) TCGA-44-2657-01 7 27149789 27149789 G T HOXA3 Silent p.P157P 0.12 TCGA-44-2657-01 7 27203115 27203115 G T HOXA9 3'UTR 0.19 TCGA-44-2657-01 7 42088288 42088288 C A GLI3 Missense_Mutation p.A161S 0.19 tolerated(0.14) probably_damaging(0.998) TCGA-44-2657-01 7 45744158 45744158 G T ADCY1 Missense_Mutation p.K920N 0.13 deleterious(0) probably_damaging(1) TCGA-44-2657-01 7 45957004 45957004 G T IGFBP3 Silent p.A152A 0.13 TCGA-44-2657-01 7 47317603 47317603 C G TNS3 3'UTR 0.17 TCGA-44-2657-01 7 47897406 47897406 T A PKD1L1 Missense_Mutation p.S1463C 0.20 deleterious(0) possibly_damaging(0.847) TCGA-44-2657-01 7 72756806 72756806 G C FKBP6 Splice_Site p.X298_splice 0.04 TCGA-44-2657-01 7 75189162 75189162 C T HIP1 Missense_Mutation p.A417T 0.20 tolerated(0.17) benign(0.082) TCGA-44-2657-01 7 7613232 7613232 G C MIOS Missense_Mutation p.E376Q 0.14 tolerated(0.35) benign(0.007) TCGA-44-2657-01 7 76891577 76891577 G A CCDC146 Missense_Mutation p.D376N 0.16 tolerated(0.07) benign(0.358) TCGA-44-2657-01 7 81335060 81335060 G T HGF Silent p.V589V 0.09 TCGA-44-2657-01 7 87144598 87144598 G T ABCB1 Missense_Mutation p.S1077R 0.10 deleterious(0) probably_damaging(1) TCGA-44-2657-01 7 87179275 87179275 G T ABCB1 Silent p.T482T 0.15 TCGA-44-2657-01 7 95001637 95001637 G A PON3 Missense_Mutation p.P72L 0.10 deleterious(0.01) possibly_damaging(0.71) TCGA-44-2657-01 7 97369240 97369240 C T TAC1 3'UTR 0.16 TCGA-44-2657-01 8 103573108 103573108 T C ODF1 Missense_Mutation p.L250S 0.07 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-44-2657-01 8 105436574 105436574 C A DPYS Missense_Mutation p.S379I 0.05 deleterious(0) probably_damaging(1) TCGA-44-2657-01 8 105502825 105502825 G C LRP12 3'UTR 0.25 TCGA-44-2657-01 8 124992872 124992872 C A FER1L6 Missense_Mutation p.Q411K 0.24 tolerated(0.34) benign(0.071) TCGA-44-2657-01 8 133673705 133673705 C A LRRC6 Splice_Site p.X60_splice 0.19 TCGA-44-2657-01 8 133673706 133673706 C T LRRC6 Missense_Mutation p.E60K 0.20 deleterious(0) possibly_damaging(0.873) TCGA-44-2657-01 8 133906105 133906105 C T TG Missense_Mutation p.P978S 0.04 tolerated(1) benign(0.001) TCGA-44-2657-01 8 139268931 139268931 C A FAM135B Splice_Site p.X123_splice 0.14 TCGA-44-2657-01 8 143867039 143867039 C T LY6D Silent p.P39P 0.24 TCGA-44-2657-01 8 2855596 2855596 C T CSMD1 Missense_Mutation p.G2772S 0.20 probably_damaging(0.999) TCGA-44-2657-01 8 62212572 62212572 C G CLVS1 Silent p.T62T 0.20 TCGA-44-2657-01 8 77618316 77618316 G T ZFHX4 Nonsense_Mutation p.E665* 0.13 TCGA-44-2657-01 8 77690535 77690535 T A ZFHX4 Missense_Mutation p.L1062Q 0.14 possibly_damaging(0.883) TCGA-44-2657-01 8 77765635 77765635 C A ZFHX4 Missense_Mutation p.Q2160K 0.07 benign(0.31) TCGA-44-2657-01 8 92998367 92998367 C G RUNX1T1 Missense_Mutation p.D433H 0.09 tolerated(0.07) benign(0.308) TCGA-44-2657-01 8 97256256 97256256 G T MTERFD1 Missense_Mutation p.T317N 0.20 tolerated(0.3) benign(0.438) TCGA-44-2657-01 8 99963021 99963021 C T OSR2 Intron 0.21 TCGA-44-2657-01 9 113148345 113148345 C A SVEP1 Missense_Mutation p.C3357F 0.21 probably_damaging(1) TCGA-44-2657-01 9 113510054 113510054 A T MUSK Missense_Mutation p.K296M 0.24 deleterious(0.01) probably_damaging(1) TCGA-44-2657-01 9 116811997 116811997 C T ZNF618 Silent p.A712A 0.18 TCGA-44-2657-01 9 139413994 139413994 C G NOTCH1 Missense_Mutation p.E256Q 0.16 tolerated(0.44) benign(0.004) TCGA-44-2657-01 9 140058266 140058266 C A GRIN1 Silent p.I854I 0.22 TCGA-44-2657-01 9 19597236 19597236 T C SLC24A2 Missense_Mutation p.T374A 0.15 tolerated(0.52) benign(0.032) TCGA-44-2657-01 9 21367766 21367766 G T IFNA13 Missense_Mutation p.H82N 0.06 deleterious(0.01) possibly_damaging(0.829) TCGA-44-2657-01 9 32631299 32631299 G T TAF1L Missense_Mutation p.P1427T 0.23 deleterious(0) probably_damaging(1) TCGA-44-2657-01 9 32633637 32633637 G C TAF1L Silent p.L647L 0.23 TCGA-44-2657-01 9 43624985 43624985 C A SPATA31A6 Missense_Mutation p.K1234N 0.10 deleterious(0.01) benign(0.001) TCGA-44-2657-01 9 74305045 74305045 G A TMEM2 Missense_Mutation p.R1272C 0.05 deleterious(0.04) benign(0.164) TCGA-44-2657-01 X 101910160 101910160 G T GPRASP1 Missense_Mutation p.W440L 0.09 deleterious(0) probably_damaging(0.999) TCGA-44-2657-01 X 101910161 101910161 G T GPRASP1 Missense_Mutation p.W440C 0.09 deleterious(0) probably_damaging(1) TCGA-44-2657-01 X 103268141 103268141 C G H2BFWT Missense_Mutation p.G31A 0.09 deleterious(0.04) benign(0.014) TCGA-44-2657-01 X 105150543 105150543 A G NRK Missense_Mutation p.R328G 0.22 deleterious(0.01) benign(0.006) TCGA-44-2657-01 X 106038880 106038880 C G RNF128 Missense_Mutation p.N408K 0.07 deleterious(0) probably_damaging(0.998) TCGA-44-2657-01 X 106765704 106765704 G T FRMPD3 Missense_Mutation p.V9F 0.12 tolerated_low_confidence(0.1) benign(0) TCGA-44-2657-01 X 106882646 106882646 G A PRPS1 Missense_Mutation p.A82T 0.11 deleterious(0) possibly_damaging(0.885) TCGA-44-2657-01 X 107422549 107422549 C A COL4A6 Missense_Mutation p.D752Y 0.08 probably_damaging(1) TCGA-44-2657-01 X 107842032 107842032 C T COL4A5 Missense_Mutation p.P627L 0.09 unknown(0) TCGA-44-2657-01 X 108867958 108867958 A T KCNE1L Missense_Mutation p.C98S 0.11 tolerated(0.21) benign(0.165) TCGA-44-2657-01 X 114141546 114141546 T A HTR2C Silent p.I315I 0.03 TCGA-44-2657-01 X 118673720 118673720 C A CXorf56 Missense_Mutation p.K213N 0.10 deleterious(0) possibly_damaging(0.705) TCGA-44-2657-01 X 118771019 118771019 C T SEPT6 Silent p.K309K 0.11 TCGA-44-2657-01 X 118783987 118783987 G A SEPT6 Silent p.I201I 0.15 TCGA-44-2657-01 X 130220349 130220349 C T ARHGAP36 Missense_Mutation p.S443F 0.09 deleterious(0.04) benign(0.016) TCGA-44-2657-01 X 130407900 130407900 G T IGSF1 Nonsense_Mutation p.S1299* 0.10 TCGA-44-2657-01 X 133700520 133700520 G T PLAC1 Missense_Mutation p.H65N 0.11 deleterious(0.02) possibly_damaging(0.836) TCGA-44-2657-01 X 134947928 134947928 C A CT45A5 Nonsense_Mutation p.E133* 0.11 TCGA-44-2657-01 X 135432071 135432071 C A GPR112 Missense_Mutation p.T2069N 0.08 tolerated(0.08) benign(0.045) TCGA-44-2657-01 X 135618242 135618242 G A VGLL1 Silent p.T21T 0.05 TCGA-44-2657-01 X 139038299 139038299 G T CXorf66 Missense_Mutation p.P281H 0.07 tolerated(0.06) probably_damaging(0.979) TCGA-44-2657-01 X 144904139 144904139 C T SLITRK2 Nonsense_Mutation p.Q66* 0.13 TCGA-44-2657-01 X 148037249 148037249 G C AFF2 Silent p.L558L 0.16 TCGA-44-2657-01 X 153068961 153068961 G T PDZD4 Missense_Mutation p.N719K 0.06 deleterious(0) benign(0.206) TCGA-44-2657-01 X 15574391 15574391 T C BMX 3'UTR 0.32 TCGA-44-2657-01 X 1755382 1755382 G T ASMT Missense_Mutation p.R280M 0.21 deleterious(0) probably_damaging(0.986) TCGA-44-2657-01 X 19046303 19046303 G T GPR64 Missense_Mutation p.Q138K 0.17 tolerated_low_confidence(0.57) benign(0.097) TCGA-44-2657-01 X 19398322 19398322 C A MAP3K15 Missense_Mutation p.W835C 0.23 deleterious(0) probably_damaging(1) TCGA-44-2657-01 X 26157899 26157899 G C MAGEB18 Missense_Mutation p.R266P 0.15 tolerated(0.06) probably_damaging(0.948) TCGA-44-2657-01 X 47426121 47426121 C T ARAF Missense_Mutation p.S214F 0.29 deleterious(0) possibly_damaging(0.786) TCGA-44-2657-01 X 48457296 48457296 A T WDR13 Missense_Mutation p.Y78F 0.24 tolerated(0.67) benign(0.002) TCGA-44-2657-01 X 49063289 49063289 C G CACNA1F Silent p.G1764G 0.14 TCGA-44-2657-01 X 5821792 5821792 C T NLGN4X Silent p.L309L 0.18 TCGA-44-2657-01 X 67937356 67937356 C A STARD8 Silent p.A200A 0.09 TCGA-44-2657-01 X 67941413 67941413 G T STARD8 Missense_Mutation p.A762S 0.16 deleterious(0.03) benign(0.009) TCGA-44-2657-01 X 69849576 69849576 G T TEX11 Missense_Mutation p.A513E 0.07 tolerated(0.06) benign(0.141) TCGA-44-2657-01 X 71350872 71350872 G A RGAG4 Silent p.F173F 0.21 TCGA-44-2657-01 X 73070884 73070884 A T XIST RNA 0.16 TCGA-44-2657-01 X 73812218 73812218 C A RLIM Missense_Mutation p.G311V 0.07 tolerated(0.14) unknown(0) TCGA-44-2657-01 X 74273349 74273349 C G ABCB7 Missense_Mutation p.W706C 0.12 deleterious(0) probably_damaging(1) TCGA-44-2657-01 X 90690839 90690839 C T PABPC5 Missense_Mutation p.P88L 0.17 deleterious(0) possibly_damaging(0.908) TCGA-44-2657-01 X 90690948 90690948 C A PABPC5 Nonsense_Mutation p.Y124* 0.16 TCGA-44-2657-01 X 91132094 91132094 C A PCDH11X Missense_Mutation p.H285Q 0.12 tolerated(0.35) benign(0.023) TCGA-44-2657-01 X 91642839 91642839 G T PCDH11X Missense_Mutation p.G1084C 0.11 deleterious(0.02) benign(0.289) TCGA-44-2657-01 X 99943410 99943410 G T SYTL4 Missense_Mutation p.H315N 0.11 tolerated(0.75) benign(0.001) TCGA-44-2659-01 10 102249075 102249075 G C SEC31B Silent p.P1035P 0.22 TCGA-44-2659-01 10 112356170 112356170 C T SMC3 Missense_Mutation p.H660Y 0.22 deleterious(0.02) benign(0.059) TCGA-44-2659-01 10 115410292 115410292 C T NRAP Missense_Mutation p.E230K 0.27 tolerated(0.1) possibly_damaging(0.887) TCGA-44-2659-01 10 115973156 115973156 A G TDRD1 Missense_Mutation p.K628R 0.04 deleterious(0.03) probably_damaging(0.953) TCGA-44-2659-01 10 117486760 117486760 A T ATRNL1 Missense_Mutation p.Q1266H 0.26 deleterious(0.01) possibly_damaging(0.459) TCGA-44-2659-01 10 118434156 118434156 C A HSPA12A 3'UTR 0.30 TCGA-44-2659-01 10 118969187 118969187 T C KCNK18 Missense_Mutation p.S178P 0.17 tolerated(0.4) benign(0.006) TCGA-44-2659-01 10 124813283 124813283 G T ACADSB 3'UTR 0.22 TCGA-44-2659-01 10 13782541 13782541 G A FRMD4A Silent p.N195N 0.30 TCGA-44-2659-01 10 30629219 30629219 C A MTPAP Missense_Mutation p.R164L 0.20 tolerated(0.16) benign(0.002) TCGA-44-2659-01 10 30918543 30918543 C A LYZL2 Missense_Mutation p.G31V 0.24 deleterious_low_confidence(0.04) benign(0.064) TCGA-44-2659-01 10 37482152 37482152 C A ANKRD30A Silent p.A804A 0.15 TCGA-44-2659-01 10 48413769 48413769 C A GDF2 Missense_Mutation p.D367Y 0.17 deleterious(0.03) probably_damaging(0.992) TCGA-44-2659-01 10 4875556 4875556 C A AKR1E2 Nonsense_Mutation p.C74* 0.13 TCGA-44-2659-01 10 5141584 5141584 G T AKR1C3 Missense_Mutation p.R171S 0.28 deleterious(0) possibly_damaging(0.741) TCGA-44-2659-01 10 61894041 61894041 T A ANK3 Silent p.P943P 0.34 TCGA-44-2659-01 10 67726505 67726505 C A CTNNA3 Splice_Site p.X756_splice 0.21 TCGA-44-2659-01 10 70405010 70405010 A G TET1 Missense_Mutation p.I842V 0.18 tolerated(0.53) benign(0.011) TCGA-44-2659-01 10 72520242 72520242 C T ADAMTS14 Missense_Mutation p.P1105L 0.31 tolerated(0.16) benign(0.001) TCGA-44-2659-01 10 90699439 90699439 G T ACTA2 Silent p.V211V 0.19 TCGA-44-2659-01 10 96480183 96480184 - T CYP2C18 Frame_Shift_Ins p.E285* 0.28 TCGA-44-2659-01 11 103229014 103229014 G T DYNC2H1 Missense_Mutation p.G4035V 0.50 benign(0.021) TCGA-44-2659-01 11 104912157 104912157 C A CARD16 Missense_Mutation p.E188D 0.28 deleterious_low_confidence(0) benign(0.217) TCGA-44-2659-01 11 1161857 1161857 C T MUC5AC Nonsense_Mutation p.Q513* 0.09 TCGA-44-2659-01 11 120983847 120983847 G C TECTA Missense_Mutation p.E185Q 0.35 tolerated(0.11) benign(0.131) TCGA-44-2659-01 11 1213656 1213656 C A MUC5AC RNA 0.43 TCGA-44-2659-01 11 124266919 124266919 G T OR8B3 Missense_Mutation p.S110Y 0.40 deleterious_low_confidence(0) possibly_damaging(0.748) TCGA-44-2659-01 11 124440930 124440930 G T OR8A1 Missense_Mutation p.R322S 0.24 tolerated(0.44) benign(0.015) TCGA-44-2659-01 11 125300031 125300031 C A PKNOX2 Missense_Mutation p.P396T 0.14 tolerated_low_confidence(0.22) benign(0.038) TCGA-44-2659-01 11 1267862 1267862 G A MUC5B Missense_Mutation p.R3251H 0.08 unknown(0) TCGA-44-2659-01 11 14284462 14284462 C A RP11-21L19.1 RNA 0.37 TCGA-44-2659-01 11 17554815 17554815 G T USH1C Silent p.R31R 0.15 TCGA-44-2659-01 11 18253967 18253967 C A SAA4 Missense_Mutation p.G69C 0.11 deleterious(0) probably_damaging(0.997) TCGA-44-2659-01 11 19077218 19077218 G C MRGPRX2 Missense_Mutation p.F244L 0.13 deleterious(0.02) benign(0.191) TCGA-44-2659-01 11 34139979 34139979 G T NAT10 Nonsense_Mutation p.E237* 0.38 TCGA-44-2659-01 11 36422595 36422595 G T PRR5L 5'UTR 0.46 TCGA-44-2659-01 11 49597720 49597720 C A RP11-707M1.1 RNA 0.37 TCGA-44-2659-01 11 49831408 49831408 C A RP11-707M1.1 RNA 0.28 TCGA-44-2659-01 11 49974443 49974443 C A OR4C13 Missense_Mutation p.Q157K 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.58) TCGA-44-2659-01 11 51412283 51412283 A T OR4A5 Missense_Mutation p.V38E 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.643) TCGA-44-2659-01 11 5364170 5364170 C G OR51B5 Silent p.L195L 0.37 TCGA-44-2659-01 11 55406728 55406728 G - OR4P4 Frame_Shift_Del p.V299Cfs*8 0.32 TCGA-44-2659-01 11 55579661 55579661 C A OR5L1 Missense_Mutation p.T240N 0.34 deleterious(0) probably_damaging(0.993) TCGA-44-2659-01 11 55761855 55761855 C G OR5F1 Missense_Mutation p.A83P 0.08 deleterious(0.05) benign(0.418) TCGA-44-2659-01 11 56380768 56380768 T A OR5M1 Missense_Mutation p.I71F 0.42 tolerated(0.46) benign(0.382) TCGA-44-2659-01 11 5799229 5799229 A T OR52N5 Silent p.A212A 0.09 TCGA-44-2659-01 11 58275002 58275002 T A OR5B21 Missense_Mutation p.S193C 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.905) TCGA-44-2659-01 11 58979381 58979381 G T MPEG1 Missense_Mutation p.P320T 0.37 deleterious(0.03) probably_damaging(1) TCGA-44-2659-01 11 6048891 6048891 G T OR56A1 Missense_Mutation p.P15Q 0.35 tolerated(1) benign(0.347) TCGA-44-2659-01 11 608329 608329 G C PHRF1 Missense_Mutation p.R957P 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-44-2659-01 11 6292833 6292833 C A CCKBR 3'UTR 0.48 TCGA-44-2659-01 11 65715521 65715521 C T TSGA10IP RNA 0.31 TCGA-44-2659-01 11 6661905 6661905 G A DCHS1 Silent p.L314L 0.14 TCGA-44-2659-01 11 7064372 7064372 G T NLRP14 Missense_Mutation p.C372F 0.14 deleterious(0) probably_damaging(0.99) TCGA-44-2659-01 11 73768561 73768561 C T C2CD3 Silent p.S1660S 0.11 TCGA-44-2659-01 11 76371428 76371429 - G LRRC32 Frame_Shift_Ins p.Y404Ifs*27 0.33 TCGA-44-2659-01 11 78147595 78147595 T C NARS2 3'UTR 0.16 TCGA-44-2659-01 11 8008774 8008774 C A EIF3F 5'UTR 0.12 TCGA-44-2659-01 11 82868476 82868476 G T PCF11 5'UTR 0.18 TCGA-44-2659-01 11 85396473 85396473 T A CCDC89 Missense_Mutation p.Q234L 0.15 deleterious(0.01) possibly_damaging(0.736) TCGA-44-2659-01 11 88337916 88337916 A G GRM5 Missense_Mutation p.L455P 0.39 tolerated(0.06) possibly_damaging(0.702) TCGA-44-2659-01 11 89891342 89891342 G T NAALAD2 Nonsense_Mutation p.G276* 0.32 TCGA-44-2659-01 11 89896515 89896515 G T NAALAD2 Missense_Mutation p.W371C 0.13 deleterious(0) probably_damaging(1) TCGA-44-2659-01 11 92531657 92531657 G T FAT3 Silent p.V1826V 0.33 TCGA-44-2659-01 11 92534270 92534270 C G FAT3 Missense_Mutation p.H2697Q 0.31 possibly_damaging(0.854) TCGA-44-2659-01 12 101727153 101727153 G - UTP20 Frame_Shift_Del p.D1165Tfs*39 0.29 TCGA-44-2659-01 12 10226002 10226002 G T CLEC1A Silent p.A184A 0.14 TCGA-44-2659-01 12 113447062 113447062 G T OAS2 Intron 0.30 TCGA-44-2659-01 12 113447063 113447063 G T OAS2 Intron 0.29 TCGA-44-2659-01 12 113553049 113553049 G C RASAL1 Missense_Mutation p.R342G 0.29 deleterious(0.01) probably_damaging(0.99) TCGA-44-2659-01 12 117604777 117604777 T A FBXO21 Silent p.A373A 0.19 TCGA-44-2659-01 12 120614022 120614022 T A GCN1L1 Splice_Site p.X280_splice 0.36 TCGA-44-2659-01 12 125437014 125437014 A C DHX37 Missense_Mutation p.L933R 0.09 deleterious(0) probably_damaging(0.953) TCGA-44-2659-01 12 132446343 132446343 G C EP400 Missense_Mutation p.L393F 0.16 unknown(0) TCGA-44-2659-01 12 133198443 133198443 C A P2RX2 Missense_Mutation p.P460Q 0.27 tolerated_low_confidence(0.49) benign(0.008) TCGA-44-2659-01 12 29659658 29659658 C A TMTC1 3'Flank 0.22 TCGA-44-2659-01 12 39734030 39734030 C A KIF21A Missense_Mutation p.Q749H 0.31 deleterious(0.01) possibly_damaging(0.566) TCGA-44-2659-01 12 41365318 41365318 G A CNTN1 Intron 0.27 TCGA-44-2659-01 12 50586248 50586248 G A LIMA1 Missense_Mutation p.P377L 0.24 deleterious(0) benign(0.13) TCGA-44-2659-01 12 50586249 50586249 G T LIMA1 Missense_Mutation p.P377T 0.25 deleterious(0.01) benign(0.022) TCGA-44-2659-01 12 52282950 52282950 G T ANKRD33 Missense_Mutation p.D166Y 0.09 deleterious(0) probably_damaging(0.957) TCGA-44-2659-01 12 52788890 52788890 C A KRT82 Missense_Mutation p.G471C 0.11 deleterious(0) possibly_damaging(0.75) TCGA-44-2659-01 12 57910683 57910683 C A DDIT3 Missense_Mutation p.R163L 0.23 deleterious(0) probably_damaging(0.998) TCGA-44-2659-01 12 63083523 63083523 C A PPM1H Missense_Mutation p.D401Y 0.23 deleterious(0.01) probably_damaging(1) TCGA-44-2659-01 12 6804697 6804697 G A PIANP Silent p.F242F 0.15 TCGA-44-2659-01 12 68708818 68708818 C A MDM1 Missense_Mutation p.G470V 0.12 tolerated(0.2) benign(0.004) TCGA-44-2659-01 12 68708819 68708819 C A MDM1 Missense_Mutation p.G470W 0.11 deleterious(0.01) possibly_damaging(0.729) TCGA-44-2659-01 12 9301592 9301592 T G PZP Splice_Site p.X1476_splice 0.30 TCGA-44-2659-01 12 95602937 95602937 C A FGD6 Missense_Mutation p.R708L 0.31 tolerated(0.15) possibly_damaging(0.701) TCGA-44-2659-01 12 97052115 97052115 T C C12orf55 Silent p.Y1817Y 0.09 TCGA-44-2659-01 13 100637593 100637593 C T ZIC2 Missense_Mutation p.P419L 0.21 deleterious(0.01) benign(0.238) TCGA-44-2659-01 13 108518829 108518829 C A FAM155A Missense_Mutation p.R39L 0.28 deleterious(0) probably_damaging(0.994) TCGA-44-2659-01 13 114778667 114778667 G T RASA3 Missense_Mutation p.A488E 0.45 deleterious(0) probably_damaging(1) TCGA-44-2659-01 13 27333071 27333071 A G GPR12 Silent p.P298P 0.21 TCGA-44-2659-01 13 28893606 28893606 G T FLT1 Missense_Mutation p.S1080R 0.14 deleterious(0) probably_damaging(0.999) TCGA-44-2659-01 13 35770394 35770394 G T NBEA Missense_Mutation p.R1774I 0.27 tolerated_low_confidence(0.19) benign(0.04) TCGA-44-2659-01 13 36743132 36743132 C A SOHLH2 3'UTR 0.22 TCGA-44-2659-01 13 41705328 41705328 C A KBTBD6 Missense_Mutation p.L440F 0.10 tolerated(0.06) benign(0.33) TCGA-44-2659-01 13 51855350 51855350 G A FAM124A Silent p.S569S 0.32 TCGA-44-2659-01 13 53624298 53624298 C A OLFM4 Missense_Mutation p.L309M 0.27 tolerated(0.07) benign(0.1) TCGA-44-2659-01 13 58207122 58207122 G T PCDH17 Missense_Mutation p.G148C 0.19 deleterious(0) probably_damaging(1) TCGA-44-2659-01 13 58207470 58207470 G T PCDH17 Missense_Mutation p.D264Y 0.29 deleterious(0.02) probably_damaging(0.991) TCGA-44-2659-01 13 60490351 60490351 C A DIAPH3 Nonsense_Mutation p.E735* 0.25 TCGA-44-2659-01 13 97639260 97639260 C A OXGR1 Missense_Mutation p.V252L 0.27 tolerated(0.17) benign(0.048) TCGA-44-2659-01 14 105407380 105407380 G C AHNAK2 Missense_Mutation p.A4803G 0.26 possibly_damaging(0.475) TCGA-44-2659-01 14 21109284 21109284 G T OR6S1 Silent p.R189R 0.43 TCGA-44-2659-01 14 21424301 21424301 G C RNASE2 Missense_Mutation p.R124T 0.24 tolerated(0.2) benign(0.01) TCGA-44-2659-01 14 23863047 23863047 G A MYH6 Missense_Mutation p.A919V 0.24 deleterious(0.01) possibly_damaging(0.905) TCGA-44-2659-01 14 23871768 23871768 C A MYH6 Missense_Mutation p.G349V 0.17 deleterious(0) possibly_damaging(0.697) TCGA-44-2659-01 14 24802138 24802138 G C ADCY4 Missense_Mutation p.F72L 0.23 deleterious(0.04) probably_damaging(0.97) TCGA-44-2659-01 14 24901180 24901180 G T KHNYN Missense_Mutation p.G238V 0.31 tolerated(0.17) possibly_damaging(0.758) TCGA-44-2659-01 14 33242894 33242894 G A AKAP6 Missense_Mutation p.R1128H 0.09 tolerated(0.28) benign(0.001) TCGA-44-2659-01 14 34395012 34395012 G A EGLN3 3'UTR 0.11 TCGA-44-2659-01 14 47530541 47530541 G T MDGA2 Missense_Mutation p.T479K 0.43 tolerated(0.25) probably_damaging(0.999) TCGA-44-2659-01 14 95088804 95088804 G T SERPINA3 Silent p.G348G 0.29 TCGA-44-2659-01 14 95884079 95884079 C G SYNE3 3'UTR 0.25 TCGA-44-2659-01 15 24922175 24922175 G T NPAP1 Missense_Mutation p.E387D 0.25 tolerated(0.08) possibly_damaging(0.644) TCGA-44-2659-01 15 34018617 34018617 C A RYR3 Missense_Mutation p.R2315S 0.12 probably_damaging(0.999) TCGA-44-2659-01 15 43552761 43552761 G A TGM5 Silent p.L9L 0.17 TCGA-44-2659-01 15 44914493 44914493 A G SPG11 Missense_Mutation p.I790T 0.06 deleterious(0.02) benign(0.087) TCGA-44-2659-01 15 45052015 45052015 C A TRIM69 Nonsense_Mutation p.Y302* 0.08 TCGA-44-2659-01 15 48064068 48064068 C A SEMA6D 3'UTR 0.13 TCGA-44-2659-01 15 48064069 48064069 T C SEMA6D 3'UTR 0.13 TCGA-44-2659-01 15 58256170 58256177 ATAGATGG - ALDH1A2 Frame_Shift_Del p.S331* 0.26 TCGA-44-2659-01 15 89862224 89862224 G A POLG Missense_Mutation p.R1071C 0.24 tolerated(0.11) benign(0.005) TCGA-44-2659-01 15 90996394 90996394 G T IQGAP1 Missense_Mutation p.A453S 0.08 tolerated(0.15) benign(0.283) TCGA-44-2659-01 16 18844354 18844354 C A SMG1 Silent p.L2900L 0.51 TCGA-44-2659-01 16 19883304 19883304 G T GPRC5B Silent p.A288A 0.49 TCGA-44-2659-01 16 20976235 20976235 G A DNAH3 Missense_Mutation p.R2991C 0.56 deleterious(0.03) benign(0.035) TCGA-44-2659-01 16 24166177 24166177 T A PRKCB Missense_Mutation p.M413K 0.51 tolerated(0.96) benign(0.002) TCGA-44-2659-01 16 24166178 24166178 G T PRKCB Missense_Mutation p.M413I 0.51 tolerated(0.21) benign(0.004) TCGA-44-2659-01 16 2882139 2882139 A - ZG16B Frame_Shift_Del p.N203Tfs*34 0.42 TCGA-44-2659-01 16 29107532 29107532 T A RRN3P2 RNA 0.29 TCGA-44-2659-01 16 30492758 30492758 A G ITGAL Splice_Site p.X193_splice 0.43 TCGA-44-2659-01 16 3293233 3293233 G - MEFV Frame_Shift_Del p.L752Ffs*19 0.46 TCGA-44-2659-01 16 3615000 3615000 C A NLRC3 Missense_Mutation p.G60V 0.55 deleterious(0.04) benign(0.031) TCGA-44-2659-01 16 54145842 54145842 T A FTO 3'UTR 0.15 TCGA-44-2659-01 16 54145867 54145867 G T FTO 3'UTR 0.52 TCGA-44-2659-01 17 10322326 10322326 G T MYH8 Missense_Mutation p.Q78K 0.25 tolerated(0.14) benign(0.08) TCGA-44-2659-01 17 27051724 27051724 C A TLCD1 Missense_Mutation p.R183L 0.16 deleterious(0) probably_damaging(1) TCGA-44-2659-01 17 29645450 29645450 G T EVI2A Missense_Mutation p.D217E 0.44 tolerated(0.27) possibly_damaging(0.803) TCGA-44-2659-01 17 29657518 29657518 T A NF1 Splice_Site p.X1938_splice 0.51 TCGA-44-2659-01 17 29667614 29667614 T A NF1 Missense_Mutation p.L2338H 0.09 deleterious(0) probably_damaging(0.993) TCGA-44-2659-01 17 34073054 34073054 G C GAS2L2 Missense_Mutation p.P488A 0.51 deleterious(0.01) benign(0.355) TCGA-44-2659-01 17 34951468 34951468 C T DHRS11 Missense_Mutation p.S72L 0.14 deleterious(0.01) benign(0.18) TCGA-44-2659-01 17 37264449 37264449 C A PLXDC1 Missense_Mutation p.Q173H 0.40 deleterious(0) probably_damaging(0.973) TCGA-44-2659-01 17 38318060 38318060 G A CASC3 Missense_Mutation p.E118K 0.34 tolerated(0.1) benign(0.37) TCGA-44-2659-01 17 38950232 38950232 G A KRT28 Nonsense_Mutation p.Q349* 0.46 TCGA-44-2659-01 17 39165133 39165133 C G KRTAP3-1 Missense_Mutation p.C65S 0.45 tolerated_low_confidence(0.07) benign(0.214) TCGA-44-2659-01 17 42988648 42988648 G T GFAP Silent p.I361I 0.39 TCGA-44-2659-01 17 42989121 42989121 G C GFAP Silent p.L275L 0.41 TCGA-44-2659-01 17 46690585 46690585 C A HOXB8 Silent p.A237A 0.41 TCGA-44-2659-01 17 4794819 4794819 G A MINK1 Silent p.Q603Q 0.20 TCGA-44-2659-01 17 5462598 5462598 G A NLRP1 Missense_Mutation p.A473V 0.20 deleterious(0.01) benign(0.326) TCGA-44-2659-01 17 56247058 56247058 C A OR4D2 Missense_Mutation p.F14L 0.12 tolerated(1) benign(0.006) TCGA-44-2659-01 17 61914346 61914346 T - SMARCD2 Frame_Shift_Del p.K168Sfs*21 0.12 TCGA-44-2659-01 17 7578556 7578556 T A TP53 Splice_Site p.X126_splice 0.41 TCGA-44-2659-01 17 77044101 77044101 C A C1QTNF1 Silent p.I259I 0.40 TCGA-44-2659-01 17 80726316 80726316 G T TBCD Missense_Mutation p.M152I 0.47 tolerated(0.2) benign(0.011) TCGA-44-2659-01 17 9757860 9757860 G T GLP2R Nonsense_Mutation p.G185* 0.21 TCGA-44-2659-01 18 31319419 31319419 C A ASXL3 Missense_Mutation p.S684Y 0.35 possibly_damaging(0.867) TCGA-44-2659-01 18 33793329 33793329 G T MOCOS Missense_Mutation p.V407L 0.15 deleterious(0.01) probably_damaging(0.941) TCGA-44-2659-01 18 42531706 42531706 G T SETBP1 Nonsense_Mutation p.E801* 0.47 TCGA-44-2659-01 18 43249375 43249375 G C SLC14A2 Missense_Mutation p.G714A 0.13 deleterious(0) probably_damaging(1) TCGA-44-2659-01 18 46858254 46858254 C A DYM Missense_Mutation p.G248V 0.15 deleterious(0) probably_damaging(0.983) TCGA-44-2659-01 18 47015750 47015750 C A RPL17-C18orf32 Missense_Mutation p.E162D 0.26 tolerated(0.18) benign(0.072) TCGA-44-2659-01 18 47463659 47463660 TG C MYO5B Frame_Shift_Del p.M621* 0.09 TCGA-44-2659-01 18 54694337 54694337 G T WDR7 Missense_Mutation p.G1458C 0.15 tolerated(0.12) probably_damaging(1) TCGA-44-2659-01 18 55359150 55359150 G A ATP8B1 Missense_Mutation p.S370F 0.21 tolerated(0.78) probably_damaging(0.956) TCGA-44-2659-01 18 56202436 56202436 C A ALPK2 Missense_Mutation p.E1661D 0.09 tolerated(0.41) benign(0.276) TCGA-44-2659-01 18 59217422 59217422 C A CDH20 Silent p.G620G 0.08 TCGA-44-2659-01 18 60015426 60015426 G A TNFRSF11A Missense_Mutation p.C34Y 0.39 deleterious(0) probably_damaging(1) TCGA-44-2659-01 18 63527052 63527052 G T CDH7 Missense_Mutation p.D535Y 0.20 deleterious(0) probably_damaging(0.998) TCGA-44-2659-01 18 74536211 74536211 A G ZNF236 5'UTR 0.32 TCGA-44-2659-01 19 18546722 18546722 T C ISYNA1 Missense_Mutation p.I329V 0.33 deleterious(0.04) possibly_damaging(0.882) TCGA-44-2659-01 19 19609385 19609385 G A GATAD2A Missense_Mutation p.R353H 0.08 deleterious(0) probably_damaging(0.993) TCGA-44-2659-01 19 19681554 19681554 G A PBX4 Silent p.C94C 0.16 TCGA-44-2659-01 19 22155180 22155180 C T ZNF208 Missense_Mutation p.E886K 0.36 tolerated(0.08) unknown(0) TCGA-44-2659-01 19 22941575 22941575 C G ZNF99 Missense_Mutation p.S379T 0.11 tolerated(0.35) benign(0.036) TCGA-44-2659-01 19 29215153 29215153 C A AC005307.3 RNA 0.11 TCGA-44-2659-01 19 3204605 3204605 C T NCLN Missense_Mutation p.S355F 0.14 deleterious(0.01) probably_damaging(0.918) TCGA-44-2659-01 19 33457284 33457284 G A CEP89 Missense_Mutation p.P43L 0.16 deleterious(0.01) benign(0.221) TCGA-44-2659-01 19 3452610 3452610 G T NFIC Silent p.P405P 0.14 TCGA-44-2659-01 19 36145541 36145541 C T COX6B1 Missense_Mutation p.R59C 0.12 tolerated(0.07) benign(0.077) TCGA-44-2659-01 19 36322556 36322556 C T NPHS1 Missense_Mutation p.R1092H 0.23 tolerated(0.41) benign(0.002) TCGA-44-2659-01 19 36349458 36349458 G - KIRREL2 Frame_Shift_Del 0.32 TCGA-44-2659-01 19 38198822 38198822 C A ZNF607 Missense_Mutation p.E76D 0.29 tolerated(0.6) benign(0.077) TCGA-44-2659-01 19 39734774 39734774 C G IFNL3 Missense_Mutation p.L94F 0.24 deleterious(0) probably_damaging(0.999) TCGA-44-2659-01 19 39819649 39819649 C A GMFG Missense_Mutation p.E116D 0.19 tolerated(0.37) benign(0.026) TCGA-44-2659-01 19 39847518 39847518 C T SAMD4B 5'UTR 0.19 TCGA-44-2659-01 19 4219712 4219712 G T ANKRD24 Missense_Mutation p.R1043L 0.37 deleterious(0.04) benign(0.046) TCGA-44-2659-01 19 44223909 44223909 G T IRGC Missense_Mutation p.R400L 0.19 tolerated(1) benign(0.164) TCGA-44-2659-01 19 47422455 47422455 G T ARHGAP35 Missense_Mutation p.D175Y 0.12 deleterious(0) possibly_damaging(0.88) TCGA-44-2659-01 19 48845850 48845850 G A TMEM143 Silent p.L304L 0.09 TCGA-44-2659-01 19 53208882 53208882 C T ZNF611 Missense_Mutation p.D476N 0.14 deleterious(0.02) benign(0.001) TCGA-44-2659-01 19 53472546 53472546 C T ZNF702P RNA 0.54 TCGA-44-2659-01 19 53854476 53854476 G C ZNF845 Missense_Mutation p.R183T 0.30 tolerated(0.58) possibly_damaging(0.554) TCGA-44-2659-01 19 54224383 54224383 C A MIR517B RNA 0.13 TCGA-44-2659-01 19 55106135 55106135 C T LILRA1 Missense_Mutation p.L26F 0.29 tolerated(0.07) benign(0.061) TCGA-44-2659-01 19 55742243 55742243 T A PPP6R1 Missense_Mutation p.R823S 0.36 deleterious_low_confidence(0.01) benign(0.073) TCGA-44-2659-01 19 55865866 55865866 C A COX6B2 Missense_Mutation p.E8D 0.12 tolerated(0.42) benign(0.001) TCGA-44-2659-01 19 56090015 56090015 C A ZNF579 Missense_Mutation p.A331S 0.32 tolerated(0.55) benign(0.01) TCGA-44-2659-01 19 56954088 56954088 G T ZNF667 Silent p.T92T 0.36 TCGA-44-2659-01 19 58579729 58579729 G A ZNF135 Missense_Mutation p.R650K 0.18 tolerated(0.1) benign(0.083) TCGA-44-2659-01 19 58579730 58579730 G A ZNF135 Silent p.R650R 0.17 TCGA-44-2659-01 19 8183790 8183790 C G FBN3 Missense_Mutation p.A1110P 0.12 deleterious(0.02) benign(0.236) TCGA-44-2659-01 19 8578116 8578116 G A ZNF414 Missense_Mutation p.S38F 0.14 tolerated_low_confidence(0.29) benign(0.045) TCGA-44-2659-01 19 9069492 9069492 C A MUC16 Missense_Mutation p.S5985I 0.13 unknown(0) TCGA-44-2659-01 19 9089844 9089844 C A MUC16 Missense_Mutation p.K657N 0.10 unknown(0) TCGA-44-2659-01 19 9967991 9967991 C T OLFM2 Silent p.Q176Q 0.26 TCGA-44-2659-01 19 9968420 9968420 C T OLFM2 Missense_Mutation p.D111N 0.35 tolerated(0.11) benign(0.103) TCGA-44-2659-01 1 103404608 103404610 CCT AA COL11A1 Frame_Shift_Del p.K1140Ifs*58 0.10 TCGA-44-2659-01 1 111146880 111146880 G T KCNA2 Silent p.I175I 0.43 TCGA-44-2659-01 1 112999276 112999276 G T CTTNBP2NL Nonsense_Mutation p.E388* 0.38 TCGA-44-2659-01 1 1237396 1237396 G A ACAP3 Missense_Mutation p.R104W 0.10 deleterious(0) possibly_damaging(0.462) TCGA-44-2659-01 1 14106677 14106677 G T PRDM2 Missense_Mutation p.S796I 0.45 probably_damaging(0.957) TCGA-44-2659-01 1 145578690 145578690 C T PIAS3 Missense_Mutation p.P166S 0.10 deleterious(0) probably_damaging(1) TCGA-44-2659-01 1 151139936 151139936 G T SCNM1 Intron 0.41 TCGA-44-2659-01 1 151338093 151338093 C A SELENBP1 Silent p.G330G 0.42 TCGA-44-2659-01 1 152058156 152058156 G A TCHHL1 Silent p.L668L 0.15 TCGA-44-2659-01 1 152280154 152280154 C A FLG Missense_Mutation p.R2403L 0.12 possibly_damaging(0.859) TCGA-44-2659-01 1 152323916 152323916 C A FLG2 Missense_Mutation p.G2116W 0.15 benign(0.351) TCGA-44-2659-01 1 153312856 153312856 C A PGLYRP4 Splice_Site p.X275_splice 0.41 TCGA-44-2659-01 1 153430349 153430349 C A S100A7 Missense_Mutation p.G80V 0.15 deleterious(0) probably_damaging(0.967) TCGA-44-2659-01 1 1562553 1562553 G T MIB2 Missense_Mutation p.R562L 0.55 tolerated(0.24) possibly_damaging(0.755) TCGA-44-2659-01 1 1562554 1562554 G T MIB2 Silent p.R562R 0.55 TCGA-44-2659-01 1 157737060 157737060 C A FCRL2 Missense_Mutation p.G375W 0.46 deleterious(0) possibly_damaging(0.862) TCGA-44-2659-01 1 158368914 158368914 G T OR10T2 Missense_Mutation p.L115I 0.10 deleterious(0.04) probably_damaging(0.996) TCGA-44-2659-01 1 158390454 158390454 C A OR10K2 Missense_Mutation p.C68F 0.10 tolerated(1) benign(0.336) TCGA-44-2659-01 1 158450337 158450337 G T OR10R2 Missense_Mutation p.V224F 0.38 deleterious(0.01) possibly_damaging(0.853) TCGA-44-2659-01 1 158607828 158607828 C A SPTA1 Missense_Mutation p.W1728C 0.33 deleterious(0) probably_damaging(1) TCGA-44-2659-01 1 158617395 158617395 C A SPTA1 Missense_Mutation p.R1277L 0.16 tolerated(0.35) benign(0.005) TCGA-44-2659-01 1 158669653 158669653 A G OR6K2 Missense_Mutation p.S264P 0.42 tolerated(0.06) possibly_damaging(0.464) TCGA-44-2659-01 1 158687606 158687606 C A OR6K3 Missense_Mutation p.Q100H 0.13 deleterious(0) probably_damaging(0.999) TCGA-44-2659-01 1 159857673 159857673 C A CCDC19 Missense_Mutation p.K182N 0.13 tolerated(0.49) benign(0.001) TCGA-44-2659-01 1 160085663 160085665 GGT A ATP1A2 Splice_Site p.X4_splice 0.38 TCGA-44-2659-01 1 161130698 161130698 C T USP21 Silent p.L90L 0.12 TCGA-44-2659-01 1 161496061 161496061 T A HSPA6 Missense_Mutation p.V538E 0.21 deleterious_low_confidence(0) possibly_damaging(0.795) TCGA-44-2659-01 1 171227174 171227174 G T FMO1 5'UTR 0.14 TCGA-44-2659-01 1 171605172 171605172 G A MYOC Missense_Mutation p.R470C 0.13 tolerated(0.07) benign(0.082) TCGA-44-2659-01 1 178252788 178252788 A T RASAL2 Missense_Mutation p.T98S 0.11 tolerated(0.55) probably_damaging(0.991) TCGA-44-2659-01 1 178252789 178252789 C T RASAL2 Missense_Mutation p.T98I 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-44-2659-01 1 183091312 183091312 C A LAMC1 Missense_Mutation p.P776H 0.15 deleterious(0) possibly_damaging(0.899) TCGA-44-2659-01 1 185956655 185956656 - C HMCN1 Frame_Shift_Ins p.S1011Vfs*17 0.34 TCGA-44-2659-01 1 19595787 19595787 C G AKR7L Intron 0.08 TCGA-44-2659-01 1 196683021 196683021 G A CFH Missense_Mutation p.G498E 0.12 deleterious(0) probably_damaging(1) TCGA-44-2659-01 1 197024971 197024971 C A F13B Missense_Mutation p.G410W 0.43 deleterious(0.02) probably_damaging(0.981) TCGA-44-2659-01 1 197396952 197396952 G T CRB1 Missense_Mutation p.G833C 0.40 deleterious(0.03) probably_damaging(0.988) TCGA-44-2659-01 1 197890725 197890725 G T LHX9 Missense_Mutation p.Q223H 0.30 tolerated(0.09) benign(0.014) TCGA-44-2659-01 1 198703339 198703339 C G PTPRC Silent p.P719P 0.36 TCGA-44-2659-01 1 200978567 200978567 T A KIF21B Missense_Mutation p.T31S 0.29 deleterious(0) probably_damaging(0.982) TCGA-44-2659-01 1 203192633 203192633 G T CHIT1 Missense_Mutation p.T157N 0.15 deleterious(0) benign(0.039) TCGA-44-2659-01 1 203743435 203743435 G T LAX1 Missense_Mutation p.D275Y 0.16 deleterious(0.03) probably_damaging(0.997) TCGA-44-2659-01 1 205053311 205053311 G A TMEM81 Silent p.A46A 0.15 TCGA-44-2659-01 1 21014281 21014281 G A KIF17 Missense_Mutation p.S513F 0.11 tolerated_low_confidence(0.79) benign(0.003) TCGA-44-2659-01 1 216369952 216369952 G T USH2A Missense_Mutation p.D1398E 0.35 benign(0.005) TCGA-44-2659-01 1 220373993 220373993 C A RAB3GAP2 Intron 0.37 TCGA-44-2659-01 1 22903323 22903323 G T EPHA8 Missense_Mutation p.G258V 0.15 deleterious(0) probably_damaging(0.951) TCGA-44-2659-01 1 237540714 237540714 C G RYR2 Missense_Mutation p.S185R 0.32 benign(0.299) TCGA-44-2659-01 1 247835561 247835561 G C OR13G1 Silent p.S261S 0.37 TCGA-44-2659-01 1 248343333 248343333 G T OR2M2 Nonsense_Mutation p.G16* 0.15 TCGA-44-2659-01 1 248813304 248813304 G T OR2T27 Missense_Mutation p.N294K 0.28 deleterious(0.01) benign(0.32) TCGA-44-2659-01 1 28564412 28564412 A C ATPIF1 Missense_Mutation p.K82Q 0.34 tolerated(0.21) possibly_damaging(0.597) TCGA-44-2659-01 1 28564414 28564414 G T ATPIF1 Missense_Mutation p.K82N 0.33 tolerated(0.06) probably_damaging(0.945) TCGA-44-2659-01 1 3703627 3703627 T A LRRC47 Missense_Mutation p.K288M 0.10 deleterious(0.01) possibly_damaging(0.789) TCGA-44-2659-01 1 47131032 47131032 C A ATPAF1 Missense_Mutation p.D114Y 0.09 deleterious(0.01) probably_damaging(0.935) TCGA-44-2659-01 1 48694626 48694626 C T SLC5A9 Silent p.N113N 0.06 TCGA-44-2659-01 1 67833708 67833708 G T IL12RB2 Nonsense_Mutation p.E487* 0.17 TCGA-44-2659-01 1 76384701 76384701 G - ASB17 Frame_Shift_Del p.P275Qfs*8 0.12 TCGA-44-2659-01 1 78195558 78195558 C A USP33 Missense_Mutation p.G266V 0.08 deleterious(0) probably_damaging(1) TCGA-44-2659-01 1 78422351 78422351 C A FUBP1 Missense_Mutation p.W537C 0.14 deleterious(0.02) unknown(0) TCGA-44-2659-01 1 90470716 90470716 G T ZNF326 Missense_Mutation p.G41V 0.37 deleterious(0) probably_damaging(0.996) TCGA-44-2659-01 20 1286120 1286120 G T SNPH Missense_Mutation p.G303C 0.29 deleterious(0) possibly_damaging(0.83) TCGA-44-2659-01 20 1460697 1460697 C A SIRPB2 Missense_Mutation p.Q33H 0.36 deleterious(0.03) possibly_damaging(0.646) TCGA-44-2659-01 20 30585000 30585000 G T XKR7 Missense_Mutation p.G494W 0.11 deleterious(0) probably_damaging(0.913) TCGA-44-2659-01 20 35737029 35737029 T C MROH8 Missense_Mutation p.R1012G 0.19 tolerated(0.34) benign(0.137) TCGA-44-2659-01 20 3677979 3677979 C A SIGLEC1 Silent p.L711L 0.23 TCGA-44-2659-01 20 44664173 44664173 A T SLC12A5 Missense_Mutation p.Q116L 0.30 deleterious(0.01) benign(0.01) TCGA-44-2659-01 20 9546606 9546606 C - PAK7 Frame_Shift_Del p.K473Nfs*5 0.31 TCGA-44-2659-01 21 28296390 28296390 G T ADAMTS5 Nonsense_Mutation p.C925* 0.29 TCGA-44-2659-01 21 30415863 30415863 T C USP16 Silent p.S433S 0.19 TCGA-44-2659-01 21 46117289 46117289 T A KRTAP10-12 Missense_Mutation p.V58E 0.14 tolerated(0.16) possibly_damaging(0.775) TCGA-44-2659-01 22 17072820 17072820 C G CCT8L2 Silent p.A207A 0.15 TCGA-44-2659-01 22 17630516 17630516 C G CECR5 Silent p.R82R 0.31 TCGA-44-2659-01 22 37533689 37533689 G T IL2RB Missense_Mutation p.H159N 0.18 deleterious(0) probably_damaging(0.986) TCGA-44-2659-01 22 38040934 38040934 C A SH3BP1 Missense_Mutation p.L249M 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-44-2659-01 22 44581730 44581730 C A PARVG Missense_Mutation p.P41H 0.20 deleterious(0) probably_damaging(0.954) TCGA-44-2659-01 22 50719028 50719028 C A PLXNB2 Silent p.T1355T 0.10 TCGA-44-2659-01 22 50900255 50900255 C A SBF1 Silent p.R871R 0.28 TCGA-44-2659-01 2 106015303 106015303 C T FHL2 5'UTR 0.29 TCGA-44-2659-01 2 113082754 113082754 G T ZC3H6 Missense_Mutation p.R689M 0.24 deleterious(0) probably_damaging(0.935) TCGA-44-2659-01 2 121107308 121107308 G T INHBB Missense_Mutation p.R361L 0.31 deleterious(0) probably_damaging(0.998) TCGA-44-2659-01 2 128381727 128381727 G T MYO7B Missense_Mutation p.Q1267H 0.25 deleterious(0) possibly_damaging(0.784) TCGA-44-2659-01 2 131521360 131521360 C T AMER3 Missense_Mutation p.P572L 0.15 tolerated(0.1) benign(0) TCGA-44-2659-01 2 132508247 132508247 A G C2orf27A 5'UTR 0.28 TCGA-44-2659-01 2 141267498 141267498 G A LRP1B Silent p.C2799C 0.18 TCGA-44-2659-01 2 1459915 1459915 C A TPO Missense_Mutation p.S227Y 0.12 deleterious(0) probably_damaging(0.998) TCGA-44-2659-01 2 1491645 1491645 G T TPO Missense_Mutation p.Q550H 0.09 tolerated(0.07) probably_damaging(0.95) TCGA-44-2659-01 2 15492159 15492159 T A NBAS Missense_Mutation p.E1379V 0.10 deleterious(0.01) possibly_damaging(0.464) TCGA-44-2659-01 2 165984466 165984466 C A SCN3A Missense_Mutation p.R1023L 0.26 tolerated(0.73) benign(0.123) TCGA-44-2659-01 2 170493474 170493474 G C PPIG Missense_Mutation p.R569T 0.12 deleterious_low_confidence(0.02) unknown(0) TCGA-44-2659-01 2 170493475 170493475 G T PPIG Missense_Mutation p.R569S 0.12 deleterious_low_confidence(0.01) unknown(0) TCGA-44-2659-01 2 179396279 179396279 G A TTN Silent p.G35021G 0.07 TCGA-44-2659-01 2 179542347 179542347 C A TTN Splice_Site p.X11431_splice 0.31 TCGA-44-2659-01 2 198266709 198266709 C G SF3B1 Missense_Mutation p.K741N 0.37 deleterious(0) probably_damaging(0.992) TCGA-44-2659-01 2 210574656 210574656 G T MAP2 Missense_Mutation p.R1584I 0.28 deleterious(0) probably_damaging(0.999) TCGA-44-2659-01 2 214162030 214162030 G T SPAG16 Silent p.L76L 0.10 TCGA-44-2659-01 2 233321921 233321921 C A ALPI Nonsense_Mutation p.Y179* 0.08 TCGA-44-2659-01 2 234112954 234112954 C T INPP5D Missense_Mutation p.P1041L 0.10 deleterious_low_confidence(0.02) benign(0.019) TCGA-44-2659-01 2 234545808 234545808 T A UGT1A10 Missense_Mutation p.L214M 0.18 tolerated(0.09) benign(0.201) TCGA-44-2659-01 2 26950707 26950707 C T KCNK3 Silent p.A152A 0.10 TCGA-44-2659-01 2 27150120 27150120 G T DPYSL5 Splice_Site p.X141_splice 0.55 TCGA-44-2659-01 2 28521252 28521252 C T BRE Nonsense_Mutation p.Q328* 0.29 TCGA-44-2659-01 2 29295827 29295827 C A C2orf71 Missense_Mutation p.C434F 0.38 tolerated(0.49) benign(0.407) TCGA-44-2659-01 2 32667152 32667152 T A BIRC6 Missense_Mutation p.L1322I 0.17 probably_damaging(0.978) TCGA-44-2659-01 2 33810265 33810265 G A FAM98A Missense_Mutation p.H379Y 0.34 tolerated_low_confidence(1) unknown(0) TCGA-44-2659-01 2 33810355 33810355 C A FAM98A Nonsense_Mutation p.G349* 0.28 TCGA-44-2659-01 2 40655830 40655830 T A SLC8A1 Missense_Mutation p.I531F 0.29 deleterious(0) probably_damaging(0.999) TCGA-44-2659-01 2 44502667 44502667 G T SLC3A1 5'UTR 0.09 TCGA-44-2659-01 2 50765580 50765580 G T NRXN1 Missense_Mutation p.Q692K 0.33 tolerated(0.4) benign(0.066) TCGA-44-2659-01 2 7036027 7036027 G A RSAD2 Missense_Mutation p.G347E 0.19 deleterious(0) probably_damaging(0.991) TCGA-44-2659-01 2 74146762 74146762 T C ACTG2 3'UTR 0.37 TCGA-44-2659-01 2 76975866 76975866 G T LRRTM4 Silent p.A576A 0.21 TCGA-44-2659-01 2 76975867 76975867 G T LRRTM4 Missense_Mutation p.A576D 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.672) TCGA-44-2659-01 2 76975892 76975892 C A LRRTM4 Missense_Mutation p.D568Y 0.11 deleterious_low_confidence(0) benign(0.397) TCGA-44-2659-01 2 77745809 77745809 G T LRRTM4 Missense_Mutation p.Q396K 0.05 tolerated(0.67) benign(0.021) TCGA-44-2659-01 2 89185128 89185128 G C IGKV4-1 Missense_Mutation p.W14S 0.14 deleterious(0.02) possibly_damaging(0.499) TCGA-44-2659-01 2 89442329 89442329 G T IGKV3-20 Missense_Mutation p.Q26K 0.16 deleterious(0) probably_damaging(1) TCGA-44-2659-01 2 90078030 90078030 G T IGKV3D-20 Missense_Mutation p.V23L 0.34 tolerated(0.05) benign(0.048) TCGA-44-2659-01 2 96579878 96579878 C T ANKRD36C Silent p.E843E 0.67 TCGA-44-2659-01 2 97274401 97274401 C A KANSL3 Missense_Mutation p.D529Y 0.24 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-44-2659-01 3 100373932 100373932 G A GPR128 Missense_Mutation p.A545T 0.17 deleterious(0.01) possibly_damaging(0.54) TCGA-44-2659-01 3 10420009 10420009 G A ATP2B2 Silent p.A376A 0.15 TCGA-44-2659-01 3 113388977 113388977 G A KIAA2018 Silent p.A50A 0.09 TCGA-44-2659-01 3 118624531 118624531 G T IGSF11 Silent p.I205I 0.12 TCGA-44-2659-01 3 119222382 119222382 T G TIMMDC1 Missense_Mutation p.S122A 0.15 tolerated(0.06) benign(0.04) TCGA-44-2659-01 3 120952514 120952514 T C STXBP5L Missense_Mutation p.V388A 0.23 tolerated(0.1) benign(0.259) TCGA-44-2659-01 3 124802813 124802813 T A SLC12A8 Missense_Mutation p.E689V 0.31 deleterious(0) probably_damaging(0.934) TCGA-44-2659-01 3 12777053 12777053 C T TMEM40 Splice_Site p.X228_splice 0.17 TCGA-44-2659-01 3 13679148 13679148 C T FBLN2 Missense_Mutation p.T1142M 0.22 deleterious(0) probably_damaging(1) TCGA-44-2659-01 3 137816623 137816623 C T DZIP1L Missense_Mutation p.A190T 0.21 tolerated(0.4) benign(0.01) TCGA-44-2659-01 3 138724401 138724401 G T PRR23A Missense_Mutation p.S237Y 0.19 tolerated(0.07) possibly_damaging(0.86) TCGA-44-2659-01 3 14154566 14154566 C T CHCHD4 Missense_Mutation p.G97R 0.14 deleterious(0) possibly_damaging(0.895) TCGA-44-2659-01 3 147128282 147128282 T A ZIC1 Missense_Mutation p.F128Y 0.17 tolerated(0.86) probably_damaging(0.991) TCGA-44-2659-01 3 147128284 147128284 G T ZIC1 Missense_Mutation p.G129W 0.20 tolerated(0.08) possibly_damaging(0.742) TCGA-44-2659-01 3 157154711 157154711 G A PTX3 5'UTR 0.26 TCGA-44-2659-01 3 160945076 160945076 A T NMD3 Missense_Mutation p.E74V 0.11 deleterious(0) probably_damaging(1) TCGA-44-2659-01 3 165548021 165548021 A T BCHE Silent p.A267A 0.23 TCGA-44-2659-01 3 180327803 180327803 G T TTC14 Missense_Mutation p.D596Y 0.15 deleterious(0) unknown(0) TCGA-44-2659-01 3 186335082 186335082 C A AHSG Missense_Mutation p.N172K 0.13 deleterious(0) probably_damaging(0.999) TCGA-44-2659-01 3 27329206 27329206 T A NEK10 Missense_Mutation p.Y591F 0.11 tolerated(0.2) benign(0.054) TCGA-44-2659-01 3 28381959 28381959 T C AZI2 Silent p.K50K 0.32 TCGA-44-2659-01 3 38040837 38040837 G T VILL Silent p.S363S 0.16 TCGA-44-2659-01 3 38622447 38622447 C A SCN5A Missense_Mutation p.G1068V 0.21 tolerated(0.25) benign(0.169) TCGA-44-2659-01 3 40573808 40573808 G C ZNF621 Missense_Mutation p.E183Q 0.35 deleterious(0.02) benign(0.071) TCGA-44-2659-01 3 46496816 46496816 C A LTF Nonsense_Mutation p.E206* 0.14 TCGA-44-2659-01 3 46496817 46496817 C A LTF Missense_Mutation p.Q205H 0.14 tolerated(0.64) benign(0.028) TCGA-44-2659-01 3 47632266 47632266 G - SMARCC1 Frame_Shift_Del p.T1036Lfs*26 0.15 TCGA-44-2659-01 3 48618353 48618353 G T COL7A1 Missense_Mutation p.P1648T 0.29 unknown(0) TCGA-44-2659-01 3 49836271 49836271 G T CDHR4 Silent p.L161L 0.21 TCGA-44-2659-01 3 50326124 50326124 C A IFRD2 Nonsense_Mutation p.E412* 0.45 TCGA-44-2659-01 3 77684057 77684057 C A ROBO2 Missense_Mutation p.T1282N 0.29 tolerated(0.12) benign(0) TCGA-44-2659-01 3 87018101 87018101 C A VGLL3 Silent p.L192L 0.15 TCGA-44-2659-01 3 93780055 93780055 T A DHFRL1 Missense_Mutation p.T101S 0.07 deleterious(0.04) benign(0.013) TCGA-44-2659-01 4 100340162 100340162 C A ADH7 Missense_Mutation p.W334C 0.23 deleterious(0) probably_damaging(1) TCGA-44-2659-01 4 123868550 123868550 C T SPATA5 Missense_Mutation p.P541S 0.20 deleterious(0.04) probably_damaging(0.994) TCGA-44-2659-01 4 126242381 126242381 C A FAT4 Missense_Mutation p.D1605E 0.25 probably_damaging(0.988) TCGA-44-2659-01 4 146823920 146823920 T A ZNF827 Missense_Mutation p.Q164L 0.28 tolerated(0.17) benign(0.27) TCGA-44-2659-01 4 154631639 154631639 C G RNF175 Missense_Mutation p.W290S 0.15 deleterious(0) possibly_damaging(0.523) TCGA-44-2659-01 4 164394546 164394546 G T TKTL2 Missense_Mutation p.P114H 0.28 deleterious(0) benign(0.439) TCGA-44-2659-01 4 189068316 189068316 C A TRIML1 Missense_Mutation p.H399Q 0.31 tolerated(0.1) probably_damaging(0.941) TCGA-44-2659-01 4 190876250 190876250 G T FRG1 Missense_Mutation p.V126F 0.05 deleterious(0.01) probably_damaging(0.945) TCGA-44-2659-01 4 52861722 52861722 C T LRRC66 Missense_Mutation p.G489E 0.30 tolerated(0.58) benign(0.004) TCGA-44-2659-01 4 52944926 52944926 C A SPATA18 Missense_Mutation p.A349E 0.15 deleterious(0.03) probably_damaging(0.986) TCGA-44-2659-01 4 55593452 55593452 T A KIT Missense_Mutation p.C537S 0.19 tolerated(0.23) benign(0.142) TCGA-44-2659-01 4 55979649 55979649 C A KDR Splice_Site p.X267_splice 0.24 TCGA-44-2659-01 4 5981934 5981934 C G C4orf50 Missense_Mutation p.E519D 0.34 deleterious(0.01) possibly_damaging(0.879) TCGA-44-2659-01 4 62845321 62845321 C T LPHN3 Missense_Mutation p.T881M 0.25 deleterious(0) probably_damaging(0.994) TCGA-44-2659-01 4 68619638 68619638 C T GNRHR Missense_Mutation p.R139H 0.16 deleterious(0) probably_damaging(1) TCGA-44-2659-01 4 71200715 71200715 C A CABS1 5'UTR 0.23 TCGA-44-2659-01 4 88584230 88584230 C A DMP1 Missense_Mutation p.Q434K 0.34 tolerated(0.06) unknown(0) TCGA-44-2659-01 4 94693324 94693324 T C GRID2 Missense_Mutation p.I900T 0.35 deleterious_low_confidence(0.01) benign(0.341) TCGA-44-2659-01 5 110407688 110407688 T A TSLP Missense_Mutation p.C34S 0.43 deleterious(0) probably_damaging(0.996) TCGA-44-2659-01 5 118968566 118968566 G T FAM170A Missense_Mutation p.R65L 0.33 tolerated(0.65) benign(0.002) TCGA-44-2659-01 5 121402325 121402326 - T LOX 3'UTR 0.32 TCGA-44-2659-01 5 1244882 1244882 C T SLC6A18 Silent p.Y552Y 0.05 TCGA-44-2659-01 5 127686687 127686687 C A FBN2 Missense_Mutation p.K895N 0.44 deleterious(0) possibly_damaging(0.741) TCGA-44-2659-01 5 131323838 131323838 C A ACSL6 Missense_Mutation p.G245V 0.39 tolerated(0.61) probably_damaging(0.927) TCGA-44-2659-01 5 131323839 131323839 C A ACSL6 Missense_Mutation p.G245C 0.38 tolerated(0.42) probably_damaging(0.979) TCGA-44-2659-01 5 140744233 140744233 C G PCDHGA5 Missense_Mutation p.N112K 0.40 deleterious_low_confidence(0) benign(0.02) TCGA-44-2659-01 5 140745002 140745002 T - PCDHGA5 Frame_Shift_Del p.F369Lfs*37 0.23 TCGA-44-2659-01 5 140789266 140789266 G T PCDHGB6 Silent p.L499L 0.29 TCGA-44-2659-01 5 145895383 145895383 C T GPR151 Silent p.A98A 0.16 TCGA-44-2659-01 5 150923125 150923125 G A FAT2 Silent p.I2521I 0.21 TCGA-44-2659-01 5 150948412 150948412 G T FAT2 Silent p.S27S 0.36 TCGA-44-2659-01 5 153857373 153857373 C A HAND1 Missense_Mutation p.A66S 0.65 tolerated(0.46) benign(0.001) TCGA-44-2659-01 5 156376676 156376676 A C TIMD4 Missense_Mutation p.L249R 0.13 deleterious(0.03) probably_damaging(0.916) TCGA-44-2659-01 5 156533775 156533775 C A HAVCR2 Missense_Mutation p.G86V 0.20 tolerated(0.07) probably_damaging(0.991) TCGA-44-2659-01 5 156731349 156731349 C G CYFIP2 Missense_Mutation p.P231R 0.09 deleterious(0) probably_damaging(0.999) TCGA-44-2659-01 5 159680488 159680488 T C CCNJL Missense_Mutation p.H402R 0.52 tolerated(0.05) benign(0.028) TCGA-44-2659-01 5 161576140 161576140 A G GABRG2 Missense_Mutation p.T357A 0.06 deleterious(0) probably_damaging(0.995) TCGA-44-2659-01 5 168093468 168093468 C A SLIT3 Silent p.A1521A 0.33 TCGA-44-2659-01 5 168201305 168201305 C A SLIT3 Silent p.L410L 0.40 TCGA-44-2659-01 5 169697832 169697832 G T LCP2 Silent p.P138P 0.19 TCGA-44-2659-01 5 172744804 172744804 A - STC2 3'UTR 0.38 TCGA-44-2659-01 5 1878835 1878835 G T IRX4 Missense_Mutation p.P270T 0.26 tolerated(0.63) benign(0.001) TCGA-44-2659-01 5 23517995 23517995 C A PRDM9 Missense_Mutation p.P103T 0.20 tolerated_low_confidence(0.13) benign(0.04) TCGA-44-2659-01 5 23527675 23527675 C A PRDM9 Missense_Mutation p.H826Q 0.19 deleterious(0) probably_damaging(0.997) TCGA-44-2659-01 5 31318142 31318142 G T CDH6 Intron 0.11 TCGA-44-2659-01 5 33954552 33954552 G A SLC45A2 Missense_Mutation p.H316Y 0.35 deleterious(0.01) probably_damaging(0.968) TCGA-44-2659-01 5 36152975 36152975 G T SKP2 Silent p.G37G 0.34 TCGA-44-2659-01 5 38418193 38418193 G T EGFLAM Missense_Mutation p.R507L 0.20 deleterious(0) probably_damaging(0.92) TCGA-44-2659-01 5 38418194 38418194 G C EGFLAM Silent p.R507R 0.20 TCGA-44-2659-01 5 44305247 44305247 A T FGF10 Missense_Mutation p.N159K 0.26 deleterious(0) probably_damaging(1) TCGA-44-2659-01 5 5239326 5239326 C T ADAMTS16 Silent p.N739N 0.13 TCGA-44-2659-01 5 54572988 54572988 T C DHX29 Silent p.T744T 0.25 TCGA-44-2659-01 5 63257347 63257347 A T HTR1A Missense_Mutation p.L67Q 0.40 deleterious(0) probably_damaging(1) TCGA-44-2659-01 5 94224666 94224666 C A MCTP1 Missense_Mutation p.R617S 0.42 tolerated(0.05) benign(0.23) TCGA-44-2659-01 6 116938031 116938031 C A RSPH4A Missense_Mutation p.P82H 0.27 deleterious_low_confidence(0) possibly_damaging(0.557) TCGA-44-2659-01 6 116938033 116938033 G T RSPH4A Missense_Mutation p.A83S 0.28 tolerated_low_confidence(0.72) benign(0.007) TCGA-44-2659-01 6 129635942 129635942 G T LAMA2 Missense_Mutation p.W1185L 0.24 tolerated(0.18) benign(0.005) TCGA-44-2659-01 6 129635943 129635943 G T LAMA2 Missense_Mutation p.W1185C 0.24 deleterious(0.03) possibly_damaging(0.664) TCGA-44-2659-01 6 129674483 129674483 C T LAMA2 Silent p.R1566R 0.27 TCGA-44-2659-01 6 131912668 131912668 C A MED23 Splice_Site p.X1158_splice 0.38 TCGA-44-2659-01 6 132649636 132649636 C T MOXD1 Missense_Mutation p.G254D 0.27 deleterious(0.02) benign(0.424) TCGA-44-2659-01 6 13321220 13321220 C A TBC1D7 Missense_Mutation p.A101S 0.34 tolerated(0.99) benign(0) TCGA-44-2659-01 6 154411267 154411267 C A OPRM1 Silent p.A292A 0.39 TCGA-44-2659-01 6 31671050 31671050 C A ABHD16A Missense_Mutation p.K3N 0.32 deleterious_low_confidence(0.05) possibly_damaging(0.497) TCGA-44-2659-01 6 31779674 31779674 C G HSPA1L Missense_Mutation p.G26R 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-2659-01 6 33164224 33164224 C - RXRB Frame_Shift_Del p.G327Vfs*10 0.30 TCGA-44-2659-01 6 33400564 33400564 C T SYNGAP1 Nonsense_Mutation p.R164* 0.06 TCGA-44-2659-01 6 38791356 38791356 C A DNAH8 Missense_Mutation p.P1030T 0.32 probably_damaging(0.979) TCGA-44-2659-01 6 46826786 46826786 T C GPR116 Missense_Mutation p.T952A 0.21 deleterious(0.04) benign(0.004) TCGA-44-2659-01 6 549257 549257 C G EXOC2 Missense_Mutation p.C719S 0.26 tolerated(0.75) benign(0.191) TCGA-44-2659-01 6 56516040 56516040 G A DST Missense_Mutation p.P195L 0.33 probably_damaging(0.999) TCGA-44-2659-01 6 56516041 56516041 G T DST Missense_Mutation p.P195T 0.35 probably_damaging(0.997) TCGA-44-2659-01 6 656317 656317 G A HUS1B Missense_Mutation p.P210S 0.22 deleterious(0) probably_damaging(0.985) TCGA-44-2659-01 6 74229134 74229136 TGC - EEF1A1 In_Frame_Del p.S83del 0.19 TCGA-44-2659-01 7 100606797 100606797 C A MUC3A Silent p.S629S 0.52 TCGA-44-2659-01 7 100663463 100663463 T A MUC17 Missense_Mutation p.L16H 0.60 benign(0.122) TCGA-44-2659-01 7 107830179 107830179 G T NRCAM Missense_Mutation p.P649T 0.62 deleterious(0) possibly_damaging(0.547) TCGA-44-2659-01 7 11068363 11068363 G T PHF14 Missense_Mutation p.C458F 0.31 deleterious(0) probably_damaging(0.929) TCGA-44-2659-01 7 113519512 113519512 C G PPP1R3A Missense_Mutation p.M545I 0.54 tolerated(0.41) benign(0.001) TCGA-44-2659-01 7 11486977 11486977 C A THSD7A Missense_Mutation p.A894S 0.22 tolerated(0.41) benign(0.004) TCGA-44-2659-01 7 121650791 121650791 C G PTPRZ1 Missense_Mutation p.S564C 0.62 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-44-2659-01 7 12270059 12270059 T C TMEM106B Silent p.Y209Y 0.37 TCGA-44-2659-01 7 123105065 123105065 T A IQUB Splice_Site p.X528_splice 0.58 TCGA-44-2659-01 7 127231266 127231266 G T ARF5 Splice_Site p.X153_splice 0.42 TCGA-44-2659-01 7 128452070 128452070 G T CCDC136 Missense_Mutation p.G749C 0.57 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-44-2659-01 7 128452071 128452071 G T CCDC136 Missense_Mutation p.G749V 0.57 deleterious_low_confidence(0.03) benign(0.048) TCGA-44-2659-01 7 128486498 128486498 C A FLNC Silent p.R1370R 0.46 TCGA-44-2659-01 7 128487758 128487758 G A FLNC Silent p.P1432P 0.14 TCGA-44-2659-01 7 130353924 130353924 G T TSGA13 Missense_Mutation p.P253H 0.58 deleterious(0) probably_damaging(0.95) TCGA-44-2659-01 7 131830026 131830026 C A PLXNA4 Missense_Mutation p.D1693Y 0.51 deleterious(0) probably_damaging(1) TCGA-44-2659-01 7 135304240 135304240 C T NUP205 Missense_Mutation p.H1345Y 0.15 deleterious(0.01) possibly_damaging(0.904) TCGA-44-2659-01 7 141755521 141755521 C A MGAM Missense_Mutation p.P1160T 0.46 deleterious(0) benign(0.189) TCGA-44-2659-01 7 143096426 143096426 C A EPHA1 Nonsense_Mutation p.E306* 0.62 TCGA-44-2659-01 7 18688221 18688221 C G HDAC9 Missense_Mutation p.T461R 0.29 tolerated(0.15) probably_damaging(0.995) TCGA-44-2659-01 7 31104473 31104473 C A ADCYAP1R1 Silent p.I26I 0.09 TCGA-44-2659-01 7 31378427 31378427 G A NEUROD6 Silent p.I152I 0.05 TCGA-44-2659-01 7 37298871 37298871 G T ELMO1 Missense_Mutation p.L110I 0.39 tolerated(0.06) benign(0.06) TCGA-44-2659-01 7 37298872 37298872 G C ELMO1 Missense_Mutation p.S109R 0.40 tolerated(0.55) benign(0.001) TCGA-44-2659-01 7 48416095 48416095 G T ABCA13 Missense_Mutation p.W3754L 0.21 probably_damaging(0.998) TCGA-44-2659-01 7 48654949 48654949 G A ABCA13 Missense_Mutation p.G4938D 0.21 probably_damaging(0.997) TCGA-44-2659-01 7 64004155 64004155 C G ZNF680 Silent p.L61L 0.30 TCGA-44-2659-01 7 81335640 81335640 G T HGF Missense_Mutation p.P574T 0.66 deleterious(0) probably_damaging(0.918) TCGA-44-2659-01 7 84669987 84669987 A T SEMA3D Splice_Site p.X349_splice 0.47 TCGA-44-2659-01 7 912908 912908 G A SUN1 Nonsense_Mutation p.W766* 0.24 TCGA-44-2659-01 7 99971855 99971855 A T PILRA Missense_Mutation p.R85W 0.43 deleterious(0) probably_damaging(0.969) TCGA-44-2659-01 8 10755798 10755798 C A XKR6 Silent p.A530A 0.32 TCGA-44-2659-01 8 11607724 11607724 C G GATA4 Silent p.G296G 0.34 TCGA-44-2659-01 8 11970596 11970596 C A ZNF705D Missense_Mutation p.H278N 0.13 deleterious(0) probably_damaging(0.987) TCGA-44-2659-01 8 133673737 133673737 G T LRRC6 Silent p.L49L 0.13 TCGA-44-2659-01 8 134042065 134042065 G T TG Splice_Site p.X2346_splice 0.30 TCGA-44-2659-01 8 139151256 139151256 A T FAM135B Missense_Mutation p.F1292I 0.21 deleterious(0) probably_damaging(0.979) TCGA-44-2659-01 8 139749775 139749775 C A COL22A1 Missense_Mutation p.G711W 0.07 unknown(0) TCGA-44-2659-01 8 143623594 143623594 G T BAI1 Silent p.L1333L 0.39 TCGA-44-2659-01 8 144942384 144942384 G A EPPK1 Silent p.L1680L 0.16 TCGA-44-2659-01 8 20112440 20112440 G T LZTS1 Missense_Mutation p.L85M 0.32 tolerated(0.12) probably_damaging(0.998) TCGA-44-2659-01 8 22969320 22969320 G A TNFRSF10C Missense_Mutation p.G50R 0.10 tolerated_low_confidence(0.43) possibly_damaging(0.635) TCGA-44-2659-01 8 24350690 24350690 A T ADAM7 Missense_Mutation p.D597V 0.30 tolerated(0.06) benign(0.291) TCGA-44-2659-01 8 27312084 27312084 G T PTK2B Missense_Mutation p.V924L 0.12 tolerated(0.08) probably_damaging(1) TCGA-44-2659-01 8 2876097 2876097 G C CSMD1 Missense_Mutation p.A2644G 0.15 possibly_damaging(0.775) TCGA-44-2659-01 8 37794885 37794885 G T GOT1L1 Missense_Mutation p.F143L 0.40 deleterious(0) probably_damaging(0.956) TCGA-44-2659-01 8 51351136 51351136 G A SNTG1 Missense_Mutation p.G66R 0.21 deleterious(0) possibly_damaging(0.789) TCGA-44-2659-01 8 52287227 52287227 C A PXDNL Missense_Mutation p.G1208C 0.12 deleterious(0) probably_damaging(1) TCGA-44-2659-01 8 52320977 52320977 G T PXDNL Silent p.A1069A 0.37 TCGA-44-2659-01 8 70981463 70981463 G T PRDM14 Silent p.P211P 0.30 TCGA-44-2659-01 8 82355575 82355575 A T PMP2 3'UTR 0.28 TCGA-44-2659-01 8 88886197 88886197 C A DCAF4L2 Translation_Start_Site p.M1? 0.40 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-44-2659-01 9 104432398 104432398 C A GRIN3A Missense_Mutation p.A766S 0.16 deleterious(0) probably_damaging(0.999) TCGA-44-2659-01 9 104432399 104432399 A G GRIN3A Silent p.A765A 0.17 TCGA-44-2659-01 9 104432400 104432400 G A GRIN3A Missense_Mutation p.A765V 0.15 deleterious(0) probably_damaging(1) TCGA-44-2659-01 9 104432903 104432903 G T GRIN3A Silent p.L597L 0.14 TCGA-44-2659-01 9 107298376 107298376 G C OR13C3 Missense_Mutation p.P240R 0.13 deleterious(0) possibly_damaging(0.708) TCGA-44-2659-01 9 108127811 108127811 G T SLC44A1 Missense_Mutation p.R434L 0.14 tolerated(0.39) possibly_damaging(0.882) TCGA-44-2659-01 9 120476354 120476354 C T TLR4 Silent p.L650L 0.33 TCGA-44-2659-01 9 124088797 124088797 T C GSN Missense_Mutation p.V526A 0.11 deleterious(0) probably_damaging(1) TCGA-44-2659-01 9 12708116 12708116 G T TYRP1 Nonsense_Mutation p.G461* 0.37 TCGA-44-2659-01 9 130588868 130588868 C A ENG Missense_Mutation p.E148D 0.15 tolerated(1) benign(0) TCGA-44-2659-01 9 133364724 133364724 C G ASS1 Missense_Mutation p.I281M 0.33 deleterious(0.01) probably_damaging(0.986) TCGA-44-2659-01 9 133932444 133932444 G T LAMC3 Nonsense_Mutation p.G690* 0.29 TCGA-44-2659-01 9 139371251 139371251 C A SEC16A Missense_Mutation p.A273S 0.26 tolerated(0.16) benign(0.225) TCGA-44-2659-01 9 21202067 21202067 C A IFNA7 Missense_Mutation p.R33L 0.14 tolerated(0.6) possibly_damaging(0.64) TCGA-44-2659-01 9 32632739 32632739 G A TAF1L Missense_Mutation p.H947Y 0.17 deleterious(0.01) benign(0.028) TCGA-44-2659-01 9 32633201 32633201 G T TAF1L Silent p.R793R 0.12 TCGA-44-2659-01 9 37126597 37126597 G T ZCCHC7 Nonsense_Mutation p.E90* 0.12 TCGA-44-2659-01 9 43624711 43624711 C A SPATA31A6 Missense_Mutation p.A1326S 0.20 deleterious(0.01) possibly_damaging(0.644) TCGA-44-2659-01 9 5300244 5300244 T A RLN2 Missense_Mutation p.S138C 0.21 tolerated(0.1) possibly_damaging(0.864) TCGA-44-2659-01 9 77257566 77257566 G T RORB Missense_Mutation p.V158F 0.24 tolerated(0.41) benign(0.009) TCGA-44-2659-01 9 86905119 86905119 C A SLC28A3 Missense_Mutation p.G367W 0.16 deleterious(0) probably_damaging(1) TCGA-44-2659-01 9 86912912 86912912 C A SLC28A3 Missense_Mutation p.W231L 0.13 deleterious(0.01) possibly_damaging(0.752) TCGA-44-2659-01 X 108638599 108638599 G T GUCY2F Silent p.R799R 0.50 TCGA-44-2659-01 X 108652325 108652325 C A GUCY2F Missense_Mutation p.V622L 0.46 deleterious(0.01) benign(0.357) TCGA-44-2659-01 X 111698533 111698533 C A ZCCHC16 Missense_Mutation p.Q193K 0.47 tolerated(0.16) benign(0.242) TCGA-44-2659-01 X 11196361 11196361 C T ARHGAP6 Silent p.E496E 0.33 TCGA-44-2659-01 X 118222495 118222496 - A KIAA1210 Frame_Shift_Ins p.E900* 0.24 TCGA-44-2659-01 X 123870955 123870955 G T TENM1 Missense_Mutation p.P210T 0.46 tolerated_low_confidence(0.43) benign(0.155) TCGA-44-2659-01 X 134992580 134992580 C A SAGE1 Missense_Mutation p.A624E 0.47 deleterious(0.03) probably_damaging(0.921) TCGA-44-2659-01 X 135431732 135431732 C T GPR112 Missense_Mutation p.S1956L 0.42 tolerated(0.05) benign(0.094) TCGA-44-2659-01 X 135741330 135741330 G T CD40LG Missense_Mutation p.R181L 0.47 tolerated(0.08) benign(0.127) TCGA-44-2659-01 X 140995244 140995244 G A MAGEC1 Missense_Mutation p.G685E 0.55 deleterious_low_confidence(0.01) probably_damaging(0.931) TCGA-44-2659-01 X 1460672 1460672 G T IL3RA Missense_Mutation p.W5L 0.20 deleterious(0.02) benign(0) TCGA-44-2659-01 X 14883648 14883648 C A FANCB 5'UTR 0.25 TCGA-44-2659-01 X 152158595 152158595 C A PNMA5 3'UTR 0.27 TCGA-44-2659-01 X 152721086 152721086 C G HAUS7 Missense_Mutation p.E292Q 0.54 deleterious(0.02) possibly_damaging(0.462) TCGA-44-2659-01 X 15607507 15607507 C G ACE2 Missense_Mutation p.R219P 0.20 deleterious(0.01) probably_damaging(0.984) TCGA-44-2659-01 X 1561078 1561078 C A ASMTL Splice_Site p.X75_splice 0.23 TCGA-44-2659-01 X 2990067 2990067 G T ARSF Missense_Mutation p.R4S 0.33 tolerated(0.26) benign(0.229) TCGA-44-2659-01 X 30269510 30269510 C - MAGEB1 Frame_Shift_Del p.P301Hfs*8 0.18 TCGA-44-2659-01 X 69282458 69282458 C G OTUD6A Missense_Mutation p.S28R 0.48 tolerated(0.26) benign(0.005) TCGA-44-2661-01 10 876909 876909 T G LARP4B Missense_Mutation p.E253D 0.07 deleterious(0.01) probably_damaging(0.948) TCGA-44-2661-01 11 120996044 120996044 T G TECTA Missense_Mutation p.L413V 0.11 deleterious(0.01) benign(0.031) TCGA-44-2661-01 11 46726804 46726804 C T ZNF408 Silent p.H518H 0.09 TCGA-44-2661-01 11 62289394 62289394 G A AHNAK Silent p.I4165I 0.12 TCGA-44-2661-01 12 52377803 52377803 C G ACVR1B Missense_Mutation p.L319V 0.10 deleterious(0) probably_damaging(0.999) TCGA-44-2661-01 12 70938424 70938424 T C PTPRB Missense_Mutation p.T1803A 0.11 deleterious(0) probably_damaging(1) TCGA-44-2661-01 12 88486598 88486598 G T CEP290 Silent p.I1107I 0.16 TCGA-44-2661-01 13 95121039 95121040 - A DCT Frame_Shift_Ins p.V186Cfs*9 0.16 TCGA-44-2661-01 15 64455120 64455120 G C PPIB Silent p.V22V 0.09 TCGA-44-2661-01 15 79749775 79749775 C A KIAA1024 Missense_Mutation p.A429E 0.12 tolerated(0.15) benign(0.111) TCGA-44-2661-01 15 81235319 81235319 G A KIAA1199 Missense_Mutation p.G1245S 0.12 deleterious(0) probably_damaging(1) TCGA-44-2661-01 16 31499014 31499014 T C SLC5A2 Silent p.D273D 0.20 TCGA-44-2661-01 17 15535856 15535856 A G RP11-385D13.1 Missense_Mutation p.Y328H 0.13 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-44-2661-01 17 18250892 18250892 C T SHMT1 Missense_Mutation p.G146E 0.23 deleterious(0) probably_damaging(1) TCGA-44-2661-01 17 40441527 40441527 A T STAT5A Missense_Mutation p.Y33F 0.16 tolerated(0.35) possibly_damaging(0.534) TCGA-44-2661-01 17 45901636 45901636 G A MRPL10 Missense_Mutation p.R251C 0.07 tolerated(0.08) benign(0.007) TCGA-44-2661-01 17 74625395 74625395 G T ST6GALNAC1 Missense_Mutation p.S177Y 0.03 benign(0.11) TCGA-44-2661-01 17 76794434 76794434 G C USP36 Intron 0.13 TCGA-44-2661-01 19 10677773 10677773 G A CDKN2D Silent p.L154L 0.12 TCGA-44-2661-01 19 14866619 14866619 C A EMR2 Silent p.L421L 0.11 TCGA-44-2661-01 19 19751158 19751158 C T GMIP Missense_Mutation p.A126T 0.15 tolerated(0.08) benign(0.045) TCGA-44-2661-01 19 30164791 30164791 C T PLEKHF1 Silent p.I15I 0.16 TCGA-44-2661-01 19 42472957 42472957 C T ATP1A3 Silent p.S946S 0.15 TCGA-44-2661-01 19 46094725 46094725 C A GPR4 Missense_Mutation p.A134S 0.10 tolerated(0.3) possibly_damaging(0.69) TCGA-44-2661-01 1 190067976 190067976 G A BRINP3 Silent p.D491D 0.09 TCGA-44-2661-01 1 200868613 200868613 C T C1orf106 Missense_Mutation p.P23L 0.14 tolerated(0.07) probably_damaging(0.984) TCGA-44-2661-01 1 221875902 221875902 G A DUSP10 Missense_Mutation p.A434V 0.09 tolerated(0.06) possibly_damaging(0.905) TCGA-44-2661-01 1 247875225 247875225 T A OR6F1 Missense_Mutation p.N278I 0.16 tolerated(0.09) probably_damaging(0.993) TCGA-44-2661-01 1 36563091 36563091 C T COL8A2 3'UTR 0.10 TCGA-44-2661-01 1 44474144 44474144 G A SLC6A9 Silent p.A230A 0.10 TCGA-44-2661-01 20 18295923 18295923 C T ZNF133 Missense_Mutation p.A142V 0.12 tolerated(0.1) benign(0.011) TCGA-44-2661-01 22 36122633 36122633 G C APOL5 Missense_Mutation p.G173A 0.11 deleterious(0.04) benign(0.075) TCGA-44-2661-01 3 112324262 112324262 G A CCDC80 3'UTR 0.11 TCGA-44-2661-01 3 173997033 173997033 T C NLGN1 Silent p.A414A 0.10 TCGA-44-2661-01 3 183909004 183909004 C T ABCF3 Silent p.R510R 0.14 TCGA-44-2661-01 3 52429049 52429049 C G DNAH1 Missense_Mutation p.L3648V 0.22 probably_damaging(0.929) TCGA-44-2661-01 4 154555427 154555427 C T KIAA0922 Missense_Mutation p.P1471L 0.11 deleterious(0.03) possibly_damaging(0.786) TCGA-44-2661-01 5 134364489 134364489 C T PITX1 Missense_Mutation p.A309T 0.15 deleterious(0.01) possibly_damaging(0.614) TCGA-44-2661-01 5 139905682 139905683 AG - ANKHD1 Frame_Shift_Del p.R1532Gfs*14 0.13 TCGA-44-2661-01 5 140174709 140174709 C T PCDHA2 Silent p.L54L 0.06 TCGA-44-2661-01 5 140712646 140712646 G C PCDHGA1 Missense_Mutation p.E799Q 0.04 tolerated_low_confidence(0.06) benign(0.091) TCGA-44-2661-01 5 151166212 151166212 G T G3BP1 Missense_Mutation p.V11F 0.15 deleterious(0) probably_damaging(0.941) TCGA-44-2661-01 5 90136558 90136558 C G GPR98 Missense_Mutation p.P5592R 0.10 probably_damaging(0.937) TCGA-44-2661-01 6 26056605 26056605 C G HIST1H1C Missense_Mutation p.A18P 0.05 tolerated(1) benign(0.011) TCGA-44-2661-01 7 55242465 55242479 GGAATTAAGAGAAGC - EGFR In_Frame_Del p.E746_A750del 0.11 TCGA-44-2661-01 7 65546942 65546942 C T ASL Silent p.L55L 0.12 TCGA-44-2661-01 8 30977835 30977835 C T WRN Missense_Mutation p.P842L 0.16 deleterious(0) probably_damaging(1) TCGA-44-2661-01 9 27204929 27204929 G A TEK Missense_Mutation p.G744R 0.08 deleterious(0.02) benign(0.018) TCGA-44-2661-01 9 27289707 27289707 G A EQTN Silent p.V148V 0.14 TCGA-44-2661-01 9 35102793 35102793 G C STOML2 Missense_Mutation p.P25A 0.04 tolerated(0.2) probably_damaging(0.994) TCGA-44-2661-01 X 2825346 2825346 C T ARSD Missense_Mutation p.C583Y 0.15 deleterious(0.01) possibly_damaging(0.908) TCGA-44-2661-01 X 44938572 44938572 C T KDM6A Silent p.A1040A 0.21 TCGA-44-2661-01 X 70836739 70836739 C T CXCR3 Missense_Mutation p.D242N 0.16 deleterious(0.03) benign(0.301) TCGA-44-2662-01 10 111878416 111878416 C T ADD3 Silent p.F213F 0.15 TCGA-44-2662-01 10 123970013 123970013 G C TACC2 Missense_Mutation p.D2025H 0.23 probably_damaging(0.998) TCGA-44-2662-01 10 135032354 135032354 C G KNDC1 Missense_Mutation p.S1566C 0.24 deleterious(0) probably_damaging(0.999) TCGA-44-2662-01 10 18292133 18292133 C G SLC39A12 Missense_Mutation p.S598C 0.13 deleterious(0.01) probably_damaging(0.951) TCGA-44-2662-01 10 22048380 22048380 C T DNAJC1 Missense_Mutation p.D439N 0.15 tolerated(0.12) benign(0.048) TCGA-44-2662-01 10 73053578 73053578 C G UNC5B Missense_Mutation p.S688C 0.32 deleterious(0.04) benign(0.022) TCGA-44-2662-01 10 7820880 7820880 T A KIN Missense_Mutation p.K160M 0.12 deleterious(0) probably_damaging(0.998) TCGA-44-2662-01 11 101953881 101953881 G A C11orf70 Missense_Mutation p.R252H 0.32 tolerated(0.08) possibly_damaging(0.576) TCGA-44-2662-01 11 106810208 106810208 G A GUCY1A2 Missense_Mutation p.S395F 0.05 tolerated(0.11) benign(0.049) TCGA-44-2662-01 11 124135212 124135212 C A OR8G5 Missense_Mutation p.P164T 0.10 deleterious(0) probably_damaging(1) TCGA-44-2662-01 11 18735942 18735942 C T IGSF22 Silent p.Q560Q 0.10 TCGA-44-2662-01 11 27389919 27389919 G A LGR4 Missense_Mutation p.S784F 0.09 tolerated(0.19) benign(0.329) TCGA-44-2662-01 11 33743968 33743968 G C CD59 Silent p.V8V 0.08 TCGA-44-2662-01 11 40137225 40137225 C A LRRC4C Missense_Mutation p.M206I 0.12 deleterious(0.01) possibly_damaging(0.795) TCGA-44-2662-01 11 62301532 62301544 CTCATCATCCCCG - AHNAK Frame_Shift_Del p.S115Rfs*15 0.27 TCGA-44-2662-01 11 62761244 62761244 G C SLC22A8 Missense_Mutation p.I441M 0.19 deleterious(0) possibly_damaging(0.794) TCGA-44-2662-01 11 65154527 65154527 G T FRMD8 Missense_Mutation p.S7I 0.29 deleterious(0.02) benign(0.203) TCGA-44-2662-01 11 66288842 66288842 G C BBS1 Silent p.L275L 0.14 TCGA-44-2662-01 11 66358453 66358453 C T CCDC87 Silent p.L678L 0.28 TCGA-44-2662-01 11 68377414 68377414 A C PPP6R3 Missense_Mutation p.K837N 0.38 tolerated(0.09) benign(0.339) TCGA-44-2662-01 11 75852254 75852254 G A UVRAG Missense_Mutation p.E633K 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-2662-01 11 76062972 76062972 G A PRKRIR Missense_Mutation p.L408F 0.29 tolerated(0.57) benign(0.013) TCGA-44-2662-01 11 800571 800571 G A PIDD Silent p.A671A 0.12 TCGA-44-2662-01 11 82985720 82985720 C G CCDC90B Missense_Mutation p.E130Q 0.31 deleterious(0) possibly_damaging(0.872) TCGA-44-2662-01 12 124323233 124323233 C G DNAH10 Missense_Mutation p.I1593M 0.19 possibly_damaging(0.896) TCGA-44-2662-01 12 22778145 22778145 C G ETNK1 Silent p.L16L 0.11 TCGA-44-2662-01 12 54914904 54914904 A G NCKAP1L Missense_Mutation p.Y587C 0.18 tolerated(0.06) possibly_damaging(0.586) TCGA-44-2662-01 12 56217256 56217256 C G DNAJC14 Missense_Mutation p.E482Q 0.21 deleterious(0.01) probably_damaging(0.981) TCGA-44-2662-01 12 56744927 56744927 C T STAT2 Missense_Mutation p.R330Q 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-44-2662-01 12 57567684 57567684 C T LRP1 Silent p.T1156T 0.17 TCGA-44-2662-01 12 64678484 64678484 C G C12orf56 Missense_Mutation p.E264Q 0.50 deleterious(0) probably_damaging(0.999) TCGA-44-2662-01 12 70133583 70133583 G A RAB3IP 5'UTR 0.13 TCGA-44-2662-01 12 7045360 7045360 C G ATN1 Silent p.L310L 0.11 TCGA-44-2662-01 12 72893294 72893294 T C TRHDE Missense_Mutation p.L489P 0.27 deleterious(0.02) probably_damaging(0.995) TCGA-44-2662-01 12 75763966 75763966 T C GLIPR1L1 3'UTR 0.24 TCGA-44-2662-01 12 78583831 78583831 G T NAV3 Missense_Mutation p.R2019S 0.08 deleterious(0) probably_damaging(0.999) TCGA-44-2662-01 13 115090800 115090800 G A CHAMP1 Missense_Mutation p.E495K 0.24 deleterious(0.01) possibly_damaging(0.547) TCGA-44-2662-01 13 25743889 25743889 G T AMER2 Silent p.P623P 0.27 TCGA-44-2662-01 13 27845160 27845160 G A RASL11A Missense_Mutation p.D27N 0.30 tolerated(0.35) benign(0.003) TCGA-44-2662-01 13 53624648 53624648 G T OLFM4 Missense_Mutation p.Q425H 0.11 deleterious(0) probably_damaging(0.996) TCGA-44-2662-01 13 77759506 77759506 C G MYCBP2 Missense_Mutation p.G1446A 0.29 benign(0) TCGA-44-2662-01 13 77760049 77760049 C G MYCBP2 Silent p.L1429L 0.19 TCGA-44-2662-01 13 99947431 99947431 C G GPR183 Silent p.L323L 0.15 TCGA-44-2662-01 14 103390271 103390271 G A AMN Splice_Site p.X55_splice 0.30 TCGA-44-2662-01 14 73749182 73749182 G C NUMB Missense_Mutation p.I327M 0.23 deleterious(0) benign(0.417) TCGA-44-2662-01 14 77845256 77845256 G C SAMD15 Missense_Mutation p.E499Q 0.24 deleterious(0.03) possibly_damaging(0.818) TCGA-44-2662-01 14 89338775 89338775 G A TTC8 Missense_Mutation p.M442I 0.15 tolerated(0.43) possibly_damaging(0.758) TCGA-44-2662-01 15 25420074 25420074 G A SNORD115-3 RNA 0.23 TCGA-44-2662-01 15 34145245 34145245 G T RYR3 Splice_Site p.X4543_splice 0.50 TCGA-44-2662-01 15 41865997 41865997 G C TYRO3 Missense_Mutation p.E756Q 0.25 deleterious(0.01) possibly_damaging(0.833) TCGA-44-2662-01 15 50891429 50891429 C A TRPM7 Missense_Mutation p.R1018I 0.29 deleterious(0) probably_damaging(1) TCGA-44-2662-01 15 99696503 99696503 C T TTC23 Splice_Site p.X332_splice 0.19 TCGA-44-2662-01 16 15677017 15677017 C A C16orf45 Missense_Mutation p.Q142K 0.09 tolerated(0.71) benign(0.001) TCGA-44-2662-01 16 19553224 19553224 G C CCP110 Missense_Mutation p.E689Q 0.12 deleterious(0.01) probably_damaging(0.986) TCGA-44-2662-01 16 20492313 20492313 G A ACSM2A Intron 0.28 TCGA-44-2662-01 16 3490921 3490921 A G ZNF597 Missense_Mutation p.F16L 0.11 deleterious(0.03) possibly_damaging(0.686) TCGA-44-2662-01 16 47723058 47723058 G C PHKB Missense_Mutation p.D913H 0.26 tolerated(0.06) possibly_damaging(0.556) TCGA-44-2662-01 16 58580600 58580600 C T CNOT1 Silent p.E1268E 0.09 TCGA-44-2662-01 16 66958740 66958740 C G RRAD Missense_Mutation p.E115Q 0.10 tolerated(1) benign(0.016) TCGA-44-2662-01 16 677518 677524 GGGGGCG C RAB40C In_Frame_Del p.G248_G250delinsR 0.23 TCGA-44-2662-01 16 67854848 67854848 G T TSNAXIP1 Missense_Mutation p.R31L 0.10 deleterious(0.04) benign(0.006) TCGA-44-2662-01 16 67976321 67976321 G C LCAT Missense_Mutation p.I231M 0.09 deleterious(0) probably_damaging(0.95) TCGA-44-2662-01 16 70190452 70190452 C T PDPR Silent p.F770F 0.22 TCGA-44-2662-01 16 71913922 71913922 C A ZNF821 5'UTR 0.10 TCGA-44-2662-01 16 72821294 72821294 C T ZFHX3 Silent p.A3627A 0.17 TCGA-44-2662-01 16 75263784 75263784 G A BCAR1 Silent p.F792F 0.22 TCGA-44-2662-01 16 90124212 90124212 G C PRDM7 3'UTR 0.19 TCGA-44-2662-01 17 17122443 17122443 C A FLCN Nonsense_Mutation p.E318* 0.28 TCGA-44-2662-01 17 25967714 25967714 G T LGALS9 Missense_Mutation p.G83V 0.19 deleterious(0) probably_damaging(0.999) TCGA-44-2662-01 17 43912048 43912048 C A CRHR1 Missense_Mutation p.A418D 0.08 tolerated(0.17) benign(0.196) TCGA-44-2662-01 17 46608134 46608134 C T HOXB1 Missense_Mutation p.E45K 0.15 deleterious(0.01) benign(0.355) TCGA-44-2662-01 17 58946004 58946004 C G BCAS3 Missense_Mutation p.Q182E 0.21 tolerated(0.05) possibly_damaging(0.53) TCGA-44-2662-01 17 60005151 60005151 G C INTS2 Intron 0.26 TCGA-44-2662-01 17 60613585 60613585 A G TLK2 Missense_Mutation p.T140A 0.24 tolerated_low_confidence(0.87) benign(0.009) TCGA-44-2662-01 17 65027117 65027117 G T CACNG4 Silent p.V327V 0.21 TCGA-44-2662-01 17 74473375 74473375 T C RHBDF2 Silent p.E298E 0.08 TCGA-44-2662-01 17 7577099 7577099 C G TP53 Missense_Mutation p.R280T 0.26 deleterious(0) probably_damaging(0.947) TCGA-44-2662-01 19 14507264 14507264 G C CD97 Missense_Mutation p.E153Q 0.24 tolerated(0.3) benign(0.086) TCGA-44-2662-01 19 1465922 1465922 C T APC2 Silent p.L874L 0.23 TCGA-44-2662-01 19 14938176 14938176 C A OR7A5 Missense_Mutation p.R293M 0.27 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-44-2662-01 19 18255868 18255868 G T MAST3 Silent p.S927S 0.25 TCGA-44-2662-01 19 31768409 31768409 C A TSHZ3 Missense_Mutation p.A764S 0.09 tolerated(0.47) possibly_damaging(0.757) TCGA-44-2662-01 19 32844370 32844370 C G ZNF507 Missense_Mutation p.P212A 0.12 tolerated(0.45) benign(0.017) TCGA-44-2662-01 19 33600726 33600726 G T GPATCH1 Missense_Mutation p.R463S 0.07 tolerated(0.13) benign(0.007) TCGA-44-2662-01 19 36017721 36017721 C A SBSN Missense_Mutation p.G488V 0.14 deleterious(0) probably_damaging(0.988) TCGA-44-2662-01 19 39025783 39025783 G C RYR1 Missense_Mutation p.E3788Q 0.06 benign(0.003) TCGA-44-2662-01 19 40172135 40172135 G A AC093063.3 5'Flank 0.05 TCGA-44-2662-01 19 40519640 40519640 C G ZNF546 Missense_Mutation p.Q155E 0.05 tolerated(0.47) benign(0.042) TCGA-44-2662-01 19 41105459 41105459 T G LTBP4 Missense_Mutation p.L113R 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-44-2662-01 19 46116895 46116895 G C EML2 Missense_Mutation p.I777M 0.04 deleterious(0) probably_damaging(0.974) TCGA-44-2662-01 19 46283154 46283154 C A DMPK Missense_Mutation p.R55L 0.17 deleterious_low_confidence(0.01) benign(0.001) TCGA-44-2662-01 19 49459574 49459574 G T BAX Missense_Mutation p.S118I 0.32 tolerated(0.22) possibly_damaging(0.707) TCGA-44-2662-01 19 52249102 52249102 C A FPR1 3'UTR 0.29 TCGA-44-2662-01 19 56104103 56104103 C T FIZ1 Missense_Mutation p.E402K 0.13 tolerated(0.81) benign(0.143) TCGA-44-2662-01 19 56423835 56423835 G C NLRP13 Missense_Mutation p.Q450E 0.11 tolerated(0.12) benign(0.003) TCGA-44-2662-01 19 9068944 9068944 C G MUC16 Missense_Mutation p.G6168R 0.18 unknown(0) TCGA-44-2662-01 1 114438396 114438396 G T AP4B1 Nonsense_Mutation p.S592* 0.16 TCGA-44-2662-01 1 118420645 118420645 C T GDAP2 Missense_Mutation p.E478K 0.11 deleterious(0) possibly_damaging(0.67) TCGA-44-2662-01 1 11907671 11907671 C G NPPA Missense_Mutation p.R24T 0.10 tolerated(0.52) benign(0.035) TCGA-44-2662-01 1 120467956 120467957 - A NOTCH2 Frame_Shift_Ins p.E1495* 0.11 TCGA-44-2662-01 1 1250237 1250237 C G CPSF3L Missense_Mutation p.K229N 0.14 tolerated(0.16) benign(0.132) TCGA-44-2662-01 1 153782584 153782584 G A GATAD2B 3'UTR 0.09 TCGA-44-2662-01 1 156244470 156244470 C G SMG5 Missense_Mutation p.K154N 0.20 tolerated(0.05) probably_damaging(0.965) TCGA-44-2662-01 1 158549566 158549566 A T OR10X1 Missense_Mutation p.F42I 0.13 tolerated(0.44) benign(0.033) TCGA-44-2662-01 1 180044335 180044335 G A CEP350 Missense_Mutation p.D1916N 0.12 benign(0.008) TCGA-44-2662-01 1 181480642 181480642 A G CACNA1E Missense_Mutation p.S170G 0.22 tolerated(0.32) benign(0.027) TCGA-44-2662-01 1 197576259 197576259 C G DENND1B Missense_Mutation p.D289H 0.25 deleterious(0) probably_damaging(0.972) TCGA-44-2662-01 1 236908017 236908017 C G ACTN2 Missense_Mutation p.S449R 0.17 deleterious(0) possibly_damaging(0.835) TCGA-44-2662-01 1 23698080 23698080 G A C1orf213 3'UTR 0.19 TCGA-44-2662-01 1 24021184 24021184 C T RPL11 Missense_Mutation p.S100L 0.29 deleterious(0.03) possibly_damaging(0.492) TCGA-44-2662-01 1 240497523 240497523 T G FMN2 Missense_Mutation p.L1587V 0.06 probably_damaging(0.918) TCGA-44-2662-01 1 242271010 242271010 G T PLD5 Missense_Mutation p.A401E 0.20 deleterious(0) possibly_damaging(0.796) TCGA-44-2662-01 1 247655162 247655162 C A OR2W5 RNA 0.17 TCGA-44-2662-01 1 247920842 247920842 G T OR1C1 Silent p.I289I 0.17 TCGA-44-2662-01 1 248112672 248112672 G T OR2L8 Missense_Mutation p.R171S 0.16 deleterious(0) probably_damaging(0.968) TCGA-44-2662-01 1 248403046 248403046 G C OR2M4 Missense_Mutation p.K272N 0.19 deleterious(0.03) benign(0.25) TCGA-44-2662-01 1 35658672 35658672 G C SFPQ 5'UTR 0.12 TCGA-44-2662-01 1 39797800 39797800 C T MACF1 Intron 0.16 TCGA-44-2662-01 1 43893319 43893319 C T SZT2 Silent p.V1182V 0.12 TCGA-44-2662-01 1 43917151 43917151 G A HYI Silent p.F230F 0.16 TCGA-44-2662-01 1 44785335 44785335 C T ERI3 Missense_Mutation p.V191I 0.06 tolerated(0.12) benign(0.03) TCGA-44-2662-01 1 46120223 46120223 C T GPBP1L1 Missense_Mutation p.E157K 0.06 tolerated(0.05) benign(0.025) TCGA-44-2662-01 1 60505791 60505791 C G C1orf87 Missense_Mutation p.R182T 0.20 deleterious(0.01) possibly_damaging(0.624) TCGA-44-2662-01 1 6253091 6253091 G C RPL22 Missense_Mutation p.I47M 0.14 deleterious(0) possibly_damaging(0.789) TCGA-44-2662-01 1 77094490 77094490 G C ST6GALNAC3 Nonstop_Mutation p.*306Sext*1 0.24 TCGA-44-2662-01 1 93159385 93159385 G A EVI5 Silent p.V401V 0.20 TCGA-44-2662-01 20 17581487 17581487 C T DSTN Silent p.V36V 0.27 TCGA-44-2662-01 20 30418929 30418929 T C MYLK2 Missense_Mutation p.V470A 0.18 deleterious(0) probably_damaging(0.999) TCGA-44-2662-01 20 34828221 34828229 CAGTGGAGA GAG AAR2 In_Frame_Del p.T144_K147delinsRE 0.18 TCGA-44-2662-01 20 49575979 49575979 C T MOCS3 Silent p.L200L 0.22 TCGA-44-2662-01 20 61982028 61982028 G T CHRNA4 Missense_Mutation p.F245L 0.17 deleterious(0) probably_damaging(0.926) TCGA-44-2662-01 20 62896764 62896764 C T PCMTD2 Silent p.V188V 0.21 TCGA-44-2662-01 21 11047567 11047567 C T BAGE2 RNA 0.03 TCGA-44-2662-01 21 31720897 31720897 A C KRTAP23-1 Missense_Mutation p.F10V 0.10 deleterious_low_confidence(0) unknown(0) TCGA-44-2662-01 22 24985872 24985872 C G FAM211B Missense_Mutation p.D75H 0.14 tolerated(0.15) possibly_damaging(0.55) TCGA-44-2662-01 22 26771546 26771546 G A SEZ6L Missense_Mutation p.E945K 0.12 tolerated(0.38) benign(0.217) TCGA-44-2662-01 22 38211697 38211697 T C GCAT Missense_Mutation p.L307P 0.12 deleterious(0) probably_damaging(0.992) TCGA-44-2662-01 22 39883979 39883979 C G MGAT3 Missense_Mutation p.I209M 0.10 deleterious(0) probably_damaging(0.997) TCGA-44-2662-01 22 50192686 50192686 G A BRD1 Missense_Mutation p.R536C 0.12 deleterious(0) probably_damaging(0.999) TCGA-44-2662-01 22 50967929 50967929 C A TYMP Missense_Mutation p.Q70H 0.12 deleterious(0) probably_damaging(0.998) TCGA-44-2662-01 2 112604723 112604723 G C ANAPC1 Missense_Mutation p.S615C 0.12 tolerated(0.16) benign(0.112) TCGA-44-2662-01 2 113190977 113190977 G A RGPD8 Silent p.L18L 0.20 TCGA-44-2662-01 2 128263325 128263325 C A IWS1 Nonsense_Mutation p.E52* 0.12 TCGA-44-2662-01 2 152295239 152295239 G A RIF1 Missense_Mutation p.V509M 0.18 tolerated(0.1) benign(0.373) TCGA-44-2662-01 2 165755217 165755217 G T SLC38A11 Silent p.L317L 0.14 TCGA-44-2662-01 2 169938312 169938312 C T DHRS9 Missense_Mutation p.S74L 0.09 deleterious(0) probably_damaging(0.969) TCGA-44-2662-01 2 179605502 179605502 T A TTN Missense_Mutation p.Q4153L 0.18 TCGA-44-2662-01 2 186670938 186670938 G C FSIP2 Missense_Mutation p.K5724N 0.09 benign(0.007) TCGA-44-2662-01 2 198949863 198949863 G T PLCL1 Missense_Mutation p.G541V 0.09 deleterious(0) probably_damaging(0.976) TCGA-44-2662-01 2 200824033 200824033 G C C2orf47 Missense_Mutation p.D165H 0.10 tolerated(0.13) probably_damaging(1) TCGA-44-2662-01 2 211542708 211542708 A G CPS1 Nonstop_Mutation p.*1507Wext*13 0.25 TCGA-44-2662-01 2 215919366 215919366 T A ABCA12 Missense_Mutation p.N114Y 0.10 deleterious(0.01) benign(0.309) TCGA-44-2662-01 2 220432056 220432056 G C OBSL1 Missense_Mutation p.I592M 0.11 deleterious(0) possibly_damaging(0.714) TCGA-44-2662-01 2 231109762 231109762 G A SP140 Missense_Mutation p.E211K 0.09 tolerated(0.14) benign(0.395) TCGA-44-2662-01 2 43452198 43452198 C G ZFP36L2 Missense_Mutation p.E249Q 0.14 tolerated(0.06) possibly_damaging(0.727) TCGA-44-2662-01 2 44569580 44569580 C T PREPL Missense_Mutation p.R243H 0.21 tolerated(0.2) possibly_damaging(0.877) TCGA-44-2662-01 2 46608818 46608818 G A EPAS1 Missense_Mutation p.R710Q 0.14 deleterious(0) possibly_damaging(0.873) TCGA-44-2662-01 2 55489449 55489449 C T MTIF2 Intron 0.10 TCGA-44-2662-01 2 55546020 55546020 C T CCDC88A Missense_Mutation p.E1094K 0.15 deleterious(0) probably_damaging(0.978) TCGA-44-2662-01 2 61538783 61538783 G C USP34 Missense_Mutation p.L1237V 0.17 deleterious(0) probably_damaging(0.975) TCGA-44-2662-01 2 70443902 70443902 T G TIA1 Intron 0.11 TCGA-44-2662-01 2 73486384 73486384 C T FBXO41 Silent p.G830G 0.09 TCGA-44-2662-01 2 74042320 74042320 G C C2orf78 Missense_Mutation p.E324Q 0.22 tolerated(0.39) benign(0.297) TCGA-44-2662-01 3 100949976 100949976 C T IMPG2 Missense_Mutation p.E1083K 0.15 deleterious(0.01) benign(0.067) TCGA-44-2662-01 3 11302247 11302247 G A HRH1 3'UTR 0.10 TCGA-44-2662-01 3 133099400 133099400 G A TMEM108 Missense_Mutation p.R282K 0.17 tolerated_low_confidence(0.21) benign(0.167) TCGA-44-2662-01 3 148596502 148596502 T C CPA3 Silent p.S147S 0.18 TCGA-44-2662-01 3 150128747 150128747 A T TSC22D2 Missense_Mutation p.Q537L 0.16 deleterious(0.01) benign(0.069) TCGA-44-2662-01 3 165548362 165548362 G A BCHE Missense_Mutation p.H154Y 0.11 deleterious(0.03) benign(0.007) TCGA-44-2662-01 3 166958699 166958699 C T ZBBX Missense_Mutation p.G801E 0.12 tolerated(0.69) benign(0.056) TCGA-44-2662-01 3 180671582 180671582 C T FXR1 Silent p.F278F 0.21 TCGA-44-2662-01 3 183960694 183960694 C T ALG3 Missense_Mutation p.R354H 0.11 deleterious(0) probably_damaging(1) TCGA-44-2662-01 3 185169074 185169074 G A MAP3K13 Splice_Site p.X390_splice 0.13 TCGA-44-2662-01 3 196460684 196460684 C G PIGX Missense_Mutation p.L248V 0.15 deleterious(0.01) benign(0.329) TCGA-44-2662-01 3 37059088 37059088 C T MLH1 Silent p.L294L 0.23 TCGA-44-2662-01 3 37396654 37396654 G T GOLGA4 Missense_Mutation p.L2228F 0.21 probably_damaging(1) TCGA-44-2662-01 3 37396655 37396655 G T GOLGA4 Nonsense_Mutation p.E2229* 0.22 TCGA-44-2662-01 3 38548401 38548401 C T EXOG Missense_Mutation p.S196F 0.22 deleterious(0) probably_damaging(0.997) TCGA-44-2662-01 3 51297694 51297694 C T DOCK3 Silent p.F764F 0.17 TCGA-44-2662-01 3 71804103 71804103 C T GPR27 Silent p.V301V 0.08 TCGA-44-2662-01 4 103590175 103590175 A T MANBA Missense_Mutation p.L421H 0.18 deleterious(0) probably_damaging(0.987) TCGA-44-2662-01 4 107845160 107845160 T C DKK2 Missense_Mutation p.D244G 0.08 tolerated(0.06) probably_damaging(0.984) TCGA-44-2662-01 4 128842758 128842758 A - MFSD8 Frame_Shift_Del p.V424Gfs*2 0.19 TCGA-44-2662-01 4 41748298 41748298 C T PHOX2B Silent p.E157E 0.11 TCGA-44-2662-01 4 56737273 56737273 A G EXOC1 Missense_Mutation p.M280V 0.11 deleterious(0.01) possibly_damaging(0.472) TCGA-44-2662-01 4 69097024 69097024 C T TMPRSS11B Missense_Mutation p.A195T 0.07 deleterious(0.02) possibly_damaging(0.739) TCGA-44-2662-01 4 70596267 70596267 G A SULT1B1 Silent p.L244L 0.09 TCGA-44-2662-01 4 72634141 72634141 G T GC Silent p.V65V 0.30 TCGA-44-2662-01 4 78081871 78081871 C G CCNG2 Intron 0.13 TCGA-44-2662-01 4 79793823 79793823 C T BMP2K Missense_Mutation p.P555L 0.07 tolerated_low_confidence(0.17) unknown(0) TCGA-44-2662-01 4 90857737 90857737 C A MMRN1 Missense_Mutation p.P969Q 0.09 deleterious(0) benign(0.024) TCGA-44-2662-01 5 1089245 1089245 T A SLC12A7 Splice_Site p.X115_splice 0.09 TCGA-44-2662-01 5 132203218 132203218 G C UQCRQ Missense_Mutation p.E65Q 0.27 tolerated(1) benign(0.01) TCGA-44-2662-01 5 136963999 136963999 G T KLHL3 Nonsense_Mutation p.C526* 0.19 TCGA-44-2662-01 5 140222842 140222842 C T PCDHA8 Missense_Mutation p.R646C 0.08 deleterious_low_confidence(0.05) benign(0.276) TCGA-44-2662-01 5 140788354 140788354 T C PCDHGB6 Silent p.S195S 0.15 TCGA-44-2662-01 5 146997641 146997641 G C JAKMIP2 Missense_Mutation p.L727V 0.11 deleterious(0.01) probably_damaging(0.969) TCGA-44-2662-01 5 149514487 149514487 C G PDGFRB Missense_Mutation p.D153H 0.17 deleterious(0) possibly_damaging(0.81) TCGA-44-2662-01 5 156755057 156755057 G T CYFIP2 Missense_Mutation p.S693I 0.25 deleterious(0) probably_damaging(0.918) TCGA-44-2662-01 5 156899773 156899773 C G NIPAL4 Missense_Mutation p.F402L 0.22 deleterious(0) probably_damaging(0.963) TCGA-44-2662-01 5 173383198 173383198 C T CPEB4 3'UTR 0.22 TCGA-44-2662-01 5 175812222 175812222 C T NOP16 Silent p.K131K 0.12 TCGA-44-2662-01 5 176859748 176859748 G C GRK6 Silent p.T127T 0.15 TCGA-44-2662-01 5 176867754 176867754 C T GRK6 Silent p.V486V 0.18 TCGA-44-2662-01 5 178996340 178996340 G A RUFY1 Missense_Mutation p.E248K 0.10 deleterious(0) probably_damaging(0.999) TCGA-44-2662-01 5 45267266 45267266 T A HCN1 Missense_Mutation p.N570Y 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-44-2662-01 5 56183268 56183268 C G MAP3K1 Missense_Mutation p.A1393G 0.06 deleterious(0.03) possibly_damaging(0.708) TCGA-44-2662-01 5 57755914 57755914 G A PLK2 5'UTR 0.27 TCGA-44-2662-01 5 89695226 89695226 C A CETN3 Nonsense_Mutation p.E137* 0.13 TCGA-44-2662-01 5 94248517 94248517 C G MCTP1 Missense_Mutation p.K505N 0.18 deleterious(0.03) possibly_damaging(0.631) TCGA-44-2662-01 5 96350700 96350700 G A LNPEP Silent p.E759E 0.25 TCGA-44-2662-01 6 100061295 100061295 A G PRDM13 Missense_Mutation p.S262G 0.38 deleterious_low_confidence(0) benign(0.123) TCGA-44-2662-01 6 132859813 132859813 G T TAAR9 Missense_Mutation p.D129Y 0.18 deleterious(0) possibly_damaging(0.902) TCGA-44-2662-01 6 142623349 142623349 G T GPR126 5'UTR 0.38 TCGA-44-2662-01 6 145103245 145103245 C G UTRN Silent p.L2940L 0.33 TCGA-44-2662-01 6 150385794 150385794 G C ULBP3 Silent p.L228L 0.12 TCGA-44-2662-01 6 151151947 151151951 CCTCC - PLEKHG1 Frame_Shift_Del p.S567Ffs*10 0.15 TCGA-44-2662-01 6 38790666 38790666 G T DNAH8 Silent p.G975G 0.23 TCGA-44-2662-01 6 44222521 44222521 G C SLC35B2 Silent p.L407L 0.12 TCGA-44-2662-01 6 49425625 49425625 G C MUT Missense_Mutation p.P178A 0.10 deleterious_low_confidence(0.01) benign(0.04) TCGA-44-2662-01 6 51889442 51889442 G A PKHD1 Silent p.I1722I 0.08 TCGA-44-2662-01 7 107416977 107416977 C T SLC26A3 Missense_Mutation p.E533K 0.10 tolerated(0.18) benign(0.042) TCGA-44-2662-01 7 121680889 121680889 C G PTPRZ1 Missense_Mutation p.P1886R 0.17 tolerated(0.14) benign(0.01) TCGA-44-2662-01 7 124503575 124503575 G A POT1 Silent p.F125F 0.25 TCGA-44-2662-01 7 140453193 140453193 T C BRAF Missense_Mutation p.N581S 0.46 deleterious(0.04) benign(0.082) TCGA-44-2662-01 7 142498916 142498916 G A TRBC2 Missense_Mutation p.E65K 0.19 deleterious(0) benign(0.349) TCGA-44-2662-01 7 23571409 23571409 C G TRA2A Missense_Mutation p.R12T 0.10 deleterious_low_confidence(0) benign(0.001) TCGA-44-2662-01 7 24756942 24756942 C A DFNA5 Nonsense_Mutation p.E210* 0.20 TCGA-44-2662-01 7 30661020 30661020 G A GARS Silent p.E457E 0.18 TCGA-44-2662-01 7 36429517 36429517 G C ANLN 5'UTR 0.27 TCGA-44-2662-01 7 44924761 44924761 C T PURB Missense_Mutation p.E63K 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-44-2662-01 7 48349715 48349715 G C ABCA13 Missense_Mutation p.D3165H 0.08 possibly_damaging(0.569) TCGA-44-2662-01 7 48563896 48563896 G A ABCA13 Missense_Mutation p.E4702K 0.12 possibly_damaging(0.505) TCGA-44-2662-01 7 51261203 51261203 G A COBL Missense_Mutation p.S110L 0.20 tolerated(0.27) benign(0.168) TCGA-44-2662-01 7 5567249 5567249 C T ACTB 3'UTR 0.25 TCGA-44-2662-01 7 73150991 73150991 G A ABHD11 Silent p.L282L 0.15 TCGA-44-2662-01 7 73245494 73245494 C T CLDN4 5'UTR 0.16 TCGA-44-2662-01 7 73932635 73932635 C A GTF2IRD1 Silent p.I228I 0.14 TCGA-44-2662-01 7 74114631 74114631 G A GTF2I Missense_Mutation p.R143Q 0.07 tolerated(0.06) probably_damaging(0.942) TCGA-44-2662-01 7 76631552 76631552 G T UPK3B Intron 0.36 TCGA-44-2662-01 7 76889471 76889471 G C CCDC146 Missense_Mutation p.E302Q 0.37 tolerated(0.12) possibly_damaging(0.835) TCGA-44-2662-01 7 82763878 82763878 C T PCLO Silent p.V996V 0.26 TCGA-44-2662-01 7 97486051 97486051 G A ASNS Silent p.V327V 0.09 TCGA-44-2662-01 7 98497313 98497313 G A TRRAP Silent p.L241L 0.25 TCGA-44-2662-01 7 99786150 99786150 G A STAG3 Missense_Mutation p.E170K 0.19 deleterious(0.02) probably_damaging(0.983) TCGA-44-2662-01 8 106813279 106813279 G A ZFPM2 Silent p.V323V 0.20 TCGA-44-2662-01 8 113246694 113246694 C A CSMD3 Missense_Mutation p.S3547I 0.09 deleterious(0) benign(0.067) TCGA-44-2662-01 8 121463465 121463465 G C MTBP Missense_Mutation p.E110Q 0.15 deleterious(0) probably_damaging(0.932) TCGA-44-2662-01 8 124146378 124146378 G A TBC1D31 Missense_Mutation p.A811T 0.08 tolerated(0.07) benign(0.013) TCGA-44-2662-01 8 130789733 130789733 C T GSDMC Missense_Mutation p.R34H 0.10 tolerated(0.38) benign(0.061) TCGA-44-2662-01 8 144332687 144332687 G A ZFP41 3'UTR 0.15 TCGA-44-2662-01 8 144642079 144642079 C T GSDMD Missense_Mutation p.S117L 0.09 deleterious(0.02) benign(0.272) TCGA-44-2662-01 8 145106271 145106271 G A OPLAH Missense_Mutation p.H1275Y 0.13 deleterious(0) benign(0) TCGA-44-2662-01 8 26223870 26223870 G A PPP2R2A Missense_Mutation p.E348K 0.07 deleterious(0.02) benign(0.154) TCGA-44-2662-01 8 2876054 2876054 A G CSMD1 Silent p.H2658H 0.15 TCGA-44-2662-01 8 56866476 56866476 G C LYN Missense_Mutation p.E241D 0.17 deleterious(0) benign(0.095) TCGA-44-2662-01 8 70617351 70617351 C A SLCO5A1 Missense_Mutation p.V513L 0.13 tolerated(0.15) benign(0.105) TCGA-44-2662-01 8 71593291 71593291 G T XKR9 5'UTR 0.12 TCGA-44-2662-01 8 77617486 77617486 C G ZFHX4 Missense_Mutation p.T388S 0.19 benign(0.003) TCGA-44-2662-01 9 115024748 115024748 G C PTBP3 Silent p.L195L 0.28 TCGA-44-2662-01 9 136380685 136380685 G T TMEM8C Missense_Mutation p.S148R 0.24 tolerated(0.78) benign(0.028) TCGA-44-2662-01 9 140441330 140441330 G A PNPLA7 Silent p.F75F 0.19 TCGA-44-2662-01 9 140870387 140870387 C G CACNA1B Silent p.L524L 0.23 TCGA-44-2662-01 9 140919511 140919511 C T CACNA1B Missense_Mutation p.A1058V 0.15 tolerated(0.22) benign(0.222) TCGA-44-2662-01 9 17298312 17298312 G T CNTLN Nonsense_Mutation p.E370* 0.18 TCGA-44-2662-01 9 33963754 33963754 G C UBAP2 Missense_Mutation p.L239V 0.12 tolerated(0.5) possibly_damaging(0.471) TCGA-44-2662-01 X 103044264 103044264 C T PLP1 Silent p.F233F 0.34 TCGA-44-2662-01 X 123870875 123870875 G T TENM1 Silent p.T236T 0.17 TCGA-44-2662-01 X 138832284 138832284 T A ATP11C Missense_Mutation p.M913L 0.36 tolerated(1) probably_damaging(0.925) TCGA-44-2662-01 X 24006555 24006555 C G KLHL15 Missense_Mutation p.G433A 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-44-2662-01 X 29972752 29972752 G C IL1RAPL1 Missense_Mutation p.E439Q 0.43 deleterious(0) probably_damaging(0.993) TCGA-44-2662-01 X 49086776 49086776 T A CACNA1F Silent p.A241A 0.55 TCGA-44-2662-01 X 70351937 70351937 C G MED12 Silent p.L1378L 0.36 TCGA-44-2662-01 X 70352266 70352266 C A MED12 Silent p.L1431L 0.35 TCGA-44-2665-01 10 115393903 115393903 G C NRAP Missense_Mutation p.Q499E 0.04 deleterious(0) possibly_damaging(0.721) TCGA-44-2665-01 10 29819539 29819539 G A SVIL Silent p.F701F 0.25 TCGA-44-2665-01 11 10500113 10500113 C T AMPD3 Silent p.L97L 0.05 TCGA-44-2665-01 11 122774779 122774779 A G C11orf63 Missense_Mutation p.Y164C 0.29 deleterious(0.03) benign(0.248) TCGA-44-2665-01 11 65482336 65482336 C G KAT5 Silent p.R328R 0.24 TCGA-44-2665-01 12 50156774 50156774 A - TMBIM6 3'UTR 0.15 TCGA-44-2665-01 12 53012246 53012246 G A KRT73 Silent p.S21S 0.17 TCGA-44-2665-01 13 45582975 45582975 A G GPALPP1 Silent p.T123T 0.19 TCGA-44-2665-01 14 38061461 38061461 G C FOXA1 Missense_Mutation p.I176M 0.29 deleterious(0) probably_damaging(1) TCGA-44-2665-01 14 97022682 97022682 A G PAPOLA Missense_Mutation p.I646V 0.16 tolerated(1) benign(0) TCGA-44-2665-01 15 44038800 44038800 C T PDIA3 Silent p.L21L 0.27 TCGA-44-2665-01 15 72020908 72020908 C T THSD4 Missense_Mutation p.R460C 0.27 deleterious(0) probably_damaging(0.978) TCGA-44-2665-01 16 20370667 20370667 T C PDILT Missense_Mutation p.K577E 0.14 deleterious_low_confidence(0) unknown(0) TCGA-44-2665-01 16 68941376 68941376 G A TANGO6 Silent p.Q566Q 0.12 TCGA-44-2665-01 16 78064470 78064470 A G CLEC3A Missense_Mutation p.D118G 0.06 tolerated(0.09) benign(0.39) TCGA-44-2665-01 17 10618753 10618753 G A TMEM220 3'UTR 0.17 TCGA-44-2665-01 17 7138794 7138794 G A PHF23 3'UTR 0.27 TCGA-44-2665-01 18 28671107 28671107 G A DSC2 Silent p.L120L 0.21 TCGA-44-2665-01 19 51874995 51874995 A G NKG7 3'UTR 0.31 TCGA-44-2665-01 19 5694505 5694505 G A LONP1 Missense_Mutation p.T738M 0.18 deleterious(0.01) benign(0.393) TCGA-44-2665-01 1 10190856 10190877 CTTAGAGCTCGGAAGGGTAAGT - UBE4B Splice_Site p.X632_splice 0.18 TCGA-44-2665-01 1 110465931 110465931 G A CSF1 Missense_Mutation p.E230K 0.24 deleterious(0.04) possibly_damaging(0.874) TCGA-44-2665-01 1 154296116 154296116 C T AQP10 Missense_Mutation p.R181W 0.15 deleterious(0.04) probably_damaging(0.98) TCGA-44-2665-01 1 155904166 155904166 G A KIAA0907 5'UTR 0.37 TCGA-44-2665-01 1 162740301 162740301 A G DDR2 Silent p.S501S 0.17 TCGA-44-2665-01 1 201341152 201341152 T A TNNT2 Intron 0.43 TCGA-44-2665-01 1 222900585 222900585 T C BROX Missense_Mutation p.F219S 0.14 deleterious(0.02) possibly_damaging(0.697) TCGA-44-2665-01 1 247978972 247978972 A C OR14A16 Missense_Mutation p.N20K 0.38 tolerated(0.15) benign(0.002) TCGA-44-2665-01 1 27216290 27216290 C T GPN2 Missense_Mutation p.D100N 0.16 tolerated(0.25) benign(0.004) TCGA-44-2665-01 1 27734802 27734802 C T WASF2 Missense_Mutation p.E460K 0.07 deleterious(0) probably_damaging(0.996) TCGA-44-2665-01 2 125671706 125671706 C T CNTNAP5 Silent p.I1254I 0.05 TCGA-44-2665-01 2 128409116 128409116 C T GPR17 Silent p.C297C 0.16 TCGA-44-2665-01 2 167301341 167301341 T C SCN7A Silent p.V519V 0.16 TCGA-44-2665-01 2 175982723 175982723 C T ATF2 Missense_Mutation p.E148K 0.18 tolerated(0.19) benign(0.024) TCGA-44-2665-01 2 202131375 202131375 G T CASP8 Nonsense_Mutation p.E115* 0.24 TCGA-44-2665-01 2 202137390 202137390 G C CASP8 Missense_Mutation p.E206D 0.19 deleterious(0) probably_damaging(0.992) TCGA-44-2665-01 2 242148934 242148934 G C ANO7 Missense_Mutation p.A469P 0.15 deleterious(0.02) benign(0.098) TCGA-44-2665-01 2 39278344 39278344 T C SOS1 Missense_Mutation p.M269V 0.33 deleterious(0.04) benign(0.146) TCGA-44-2665-01 2 77746185 77746185 C T LRRTM4 Silent p.P270P 0.18 TCGA-44-2665-01 3 126747837 126747837 G A PLXNA1 Silent p.E1557E 0.15 TCGA-44-2665-01 3 129137132 129137132 T G EFCAB12 Missense_Mutation p.I216L 0.29 tolerated(0.07) possibly_damaging(0.549) TCGA-44-2665-01 3 49060156 49060156 A G NDUFAF3 Missense_Mutation p.T98A 0.18 deleterious(0.01) possibly_damaging(0.734) TCGA-44-2665-01 3 49928032 49928032 G A MST1R Silent p.D1232D 0.25 TCGA-44-2665-01 4 109817864 109817864 C T COL25A1 Missense_Mutation p.D289N 0.19 tolerated(0.1) possibly_damaging(0.856) TCGA-44-2665-01 4 140265339 140265339 G A NAA15 Splice_Site p.X180_splice 0.20 TCGA-44-2665-01 4 165962566 165962566 G A TRIM60 Missense_Mutation p.V448I 0.25 tolerated(0.31) benign(0.01) TCGA-44-2665-01 5 141693820 141693820 G C SPRY4 Missense_Mutation p.A308G 0.11 tolerated(0.06) benign(0.39) TCGA-44-2665-01 5 169812334 169812334 G T KCNMB1 Missense_Mutation p.P40T 0.16 tolerated(0.07) probably_damaging(1) TCGA-44-2665-01 5 89923108 89923108 C A GPR98 Silent p.S251S 0.14 TCGA-44-2665-01 6 136681011 136681011 G A MAP7 Missense_Mutation p.T642I 0.20 tolerated(0.16) unknown(0) TCGA-44-2665-01 6 146351336 146351336 C T GRM1 Missense_Mutation p.S228F 0.11 deleterious(0) possibly_damaging(0.517) TCGA-44-2665-01 6 6167746 6167746 T C F13A1 Missense_Mutation p.D618G 0.29 deleterious(0.02) benign(0.131) TCGA-44-2665-01 8 105105782 105105782 G T RIMS2 Intron 0.06 TCGA-44-2665-01 8 22926500 22926500 G C TNFRSF10B 5'UTR 0.25 TCGA-44-2665-01 8 30945312 30945312 T A WRN Missense_Mutation p.S484R 0.22 tolerated(0.22) benign(0.022) TCGA-44-2665-01 8 32621515 32621515 G A NRG1 Silent p.A511A 0.24 TCGA-44-2665-01 9 126144403 126144403 C T DENND1A Missense_Mutation p.D780N 0.25 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-44-2665-01 9 128000573 128000573 G A HSPA5 Missense_Mutation p.L417F 0.18 deleterious_low_confidence(0) possibly_damaging(0.81) TCGA-44-2665-01 X 3241386 3241386 C T MXRA5 Silent p.P780P 0.27 TCGA-44-2665-01 X 49029495 49029495 T C PLP2 Missense_Mutation p.L39P 0.10 deleterious(0) probably_damaging(0.988) TCGA-44-2665-01 X 64959737 64959737 C T MSN Silent p.D572D 0.11 TCGA-44-2665-01 X 73047023 73047023 C G XIST RNA 0.18 TCGA-44-2665-01 X 79698599 79698599 C A FAM46D Nonsense_Mutation p.Y187* 0.19 TCGA-44-2666-01 10 74033978 74033978 C T DDIT4 Missense_Mutation p.P2S 0.27 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-44-2666-01 10 89624151 89624151 C T PTEN 5'UTR 0.26 TCGA-44-2666-01 11 62751060 62751060 G T SLC22A6 Missense_Mutation p.L193I 0.21 deleterious(0) possibly_damaging(0.734) TCGA-44-2666-01 11 73429696 73429696 C T RAB6A Intron 0.12 TCGA-44-2666-01 11 92085756 92085756 C T FAT3 Missense_Mutation p.P160S 0.25 probably_damaging(0.999) TCGA-44-2666-01 12 121003284 121003284 C T RNF10 Missense_Mutation p.R613C 0.07 deleterious(0) probably_damaging(0.953) TCGA-44-2666-01 12 29598221 29598221 C G OVCH1 Missense_Mutation p.L957F 0.06 tolerated(1) benign(0.002) TCGA-44-2666-01 13 39544436 39544436 G A STOML3 Silent p.N134N 0.04 TCGA-44-2666-01 14 64518664 64518664 G T SYNE2 Missense_Mutation p.G2678V 0.24 possibly_damaging(0.675) TCGA-44-2666-01 14 71209109 71209109 C A MAP3K9 Missense_Mutation p.R509L 0.07 deleterious(0) possibly_damaging(0.456) TCGA-44-2666-01 15 31233830 31233830 G A MTMR10 Missense_Mutation p.T726I 0.33 tolerated(0.36) unknown(0) TCGA-44-2666-01 15 31294527 31294527 G C TRPM1 Missense_Mutation p.S1476C 0.18 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-44-2666-01 15 42840384 42840384 T C LRRC57 Missense_Mutation p.N48S 0.05 deleterious(0) probably_damaging(0.999) TCGA-44-2666-01 17 32583777 32583777 C T CCL2 Silent p.D77D 0.23 TCGA-44-2666-01 17 57474565 57474565 A G YPEL2 3'UTR 0.24 TCGA-44-2666-01 19 15291016 15291016 T C NOTCH3 Missense_Mutation p.D1065G 0.09 tolerated(1) benign(0) TCGA-44-2666-01 19 19032540 19032540 T C DDX49 Missense_Mutation p.I103T 0.25 deleterious(0.03) benign(0.144) TCGA-44-2666-01 19 30936168 30936168 G A ZNF536 Missense_Mutation p.V567M 0.08 deleterious(0.05) benign(0.041) TCGA-44-2666-01 19 49409050 49409050 A C NUCB1 Missense_Mutation p.H95P 0.05 deleterious(0.01) possibly_damaging(0.677) TCGA-44-2666-01 19 55019211 55019211 G A LAIR2 Missense_Mutation p.R59H 0.27 deleterious(0.04) probably_damaging(0.986) TCGA-44-2666-01 19 9047069 9047069 G A MUC16 Missense_Mutation p.A11521V 0.07 benign(0.069) TCGA-44-2666-01 1 119474252 119474252 T C TBX15 Missense_Mutation p.K31E 0.06 deleterious(0) possibly_damaging(0.611) TCGA-44-2666-01 1 154493861 154493861 G C TDRD10 Missense_Mutation p.G92A 0.04 deleterious(0.01) probably_damaging(1) TCGA-44-2666-01 1 186646825 186646825 C G PTGS2 Missense_Mutation p.D199H 0.08 tolerated(0.11) probably_damaging(0.998) TCGA-44-2666-01 1 186646874 186646874 C T PTGS2 Missense_Mutation p.M182I 0.07 tolerated(0.08) benign(0.002) TCGA-44-2666-01 20 36640637 36640637 C T TTI1 Missense_Mutation p.E528K 0.19 tolerated(0.07) probably_damaging(0.922) TCGA-44-2666-01 21 46604861 46604861 C T ADARB1 Missense_Mutation p.R514C 0.04 deleterious(0) possibly_damaging(0.553) TCGA-44-2666-01 22 31741165 31741165 A T PATZ1 Missense_Mutation p.F142I 0.03 deleterious_low_confidence(0) benign(0.001) TCGA-44-2666-01 2 160104993 160104993 C G WDSUB1 Missense_Mutation p.R388T 0.34 deleterious(0) probably_damaging(0.932) TCGA-44-2666-01 2 207558023 207558023 G A DYTN Missense_Mutation p.L286F 0.31 tolerated(0.15) benign(0.055) TCGA-44-2666-01 2 96646499 96646499 T C ANKRD36C Missense_Mutation p.K210E 0.11 tolerated(0.41) possibly_damaging(0.631) TCGA-44-2666-01 3 167167112 167167112 G A SERPINI2 Missense_Mutation p.T348I 0.28 deleterious(0) possibly_damaging(0.511) TCGA-44-2666-01 3 47162162 47162162 G A SETD2 Nonsense_Mutation p.R1322* 0.26 TCGA-44-2666-01 3 52473930 52473930 C T SEMA3G Missense_Mutation p.R443H 0.23 tolerated(0.09) probably_damaging(0.999) TCGA-44-2666-01 4 185074882 185074882 G A ENPP6 Silent p.R82R 0.14 TCGA-44-2666-01 5 132158801 132158801 A C SHROOM1 Missense_Mutation p.L749R 0.44 tolerated(0.12) probably_damaging(1) TCGA-44-2666-01 5 137520631 137520631 T C KIF20A Missense_Mutation p.C607R 0.07 tolerated(0.09) benign(0.434) TCGA-44-2666-01 6 52870089 52870089 A T ICK Missense_Mutation p.L586Q 0.24 tolerated(0.33) benign(0.434) TCGA-44-2666-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.22 deleterious(0) probably_damaging(0.967) TCGA-44-2666-01 7 151845820 151845820 C T KMT2C Missense_Mutation p.D4398N 0.07 probably_damaging(0.999) TCGA-44-2666-01 9 117568153 117568153 A C TNFSF15 Missense_Mutation p.L47R 0.18 deleterious(0) probably_damaging(0.914) TCGA-44-2666-01 9 131741553 131741553 A G NUP188 Missense_Mutation p.T406A 0.04 tolerated(0.58) benign(0.004) TCGA-44-2666-01 X 2933387 2933387 G A ARSH Silent p.E239E 0.26 TCGA-44-2668-01 10 102584414 102584414 T A PAX2 Missense_Mutation p.M333K 0.13 deleterious(0) possibly_damaging(0.489) TCGA-44-2668-01 10 103899482 103899482 C - PPRC1 Frame_Shift_Del p.L407Sfs*10 0.13 TCGA-44-2668-01 10 121212201 121212201 A T GRK5 Nonsense_Mutation p.K475* 0.17 TCGA-44-2668-01 10 12136268 12136268 C G DHTKD1 Missense_Mutation p.I452M 0.21 deleterious(0) probably_damaging(0.998) TCGA-44-2668-01 10 127569217 127569217 T A DHX32 Missense_Mutation p.R59S 0.16 deleterious(0) probably_damaging(0.999) TCGA-44-2668-01 10 127685120 127685120 C T FANK1 Missense_Mutation p.R134C 0.08 deleterious(0.05) benign(0.436) TCGA-44-2668-01 10 134896063 134896063 C A GPR123-AS1 3'Flank 0.24 TCGA-44-2668-01 10 135024994 135024994 G T KNDC1 Missense_Mutation p.W1326L 0.10 deleterious(0) probably_damaging(0.995) TCGA-44-2668-01 10 15325952 15325952 T A FAM171A1 Missense_Mutation p.S84C 0.10 deleterious(0) possibly_damaging(0.705) TCGA-44-2668-01 10 15688991 15688991 G T ITGA8 Missense_Mutation p.P354H 0.19 deleterious(0.02) probably_damaging(1) TCGA-44-2668-01 10 27355419 27355419 A G ANKRD26 Silent p.S422S 0.17 TCGA-44-2668-01 10 55721653 55721653 C T PCDH15 Splice_Site p.X957_splice 0.12 TCGA-44-2668-01 10 70156631 70156631 G T RUFY2 Missense_Mutation p.L137M 0.17 tolerated(0.28) probably_damaging(0.94) TCGA-44-2668-01 10 70645915 70645915 G T STOX1 Missense_Mutation p.R788M 0.12 tolerated(0.14) benign(0.08) TCGA-44-2668-01 10 75435611 75435611 C T AGAP5 Silent p.P269P 0.15 TCGA-44-2668-01 10 82043734 82043734 A T MAT1A Missense_Mutation p.V77E 0.19 deleterious(0) probably_damaging(0.986) TCGA-44-2668-01 10 82122230 82122230 G T DYDC2 Nonsense_Mutation p.G25* 0.15 TCGA-44-2668-01 10 98146809 98146809 G T TLL2 Missense_Mutation p.H585N 0.21 tolerated(0.58) benign(0.001) TCGA-44-2668-01 11 102464323 102464323 G T MMP20 Missense_Mutation p.P365H 0.14 deleterious(0.03) benign(0.01) TCGA-44-2668-01 11 104819384 104819384 C A CASP4 Missense_Mutation p.W267C 0.11 deleterious(0.02) probably_damaging(0.984) TCGA-44-2668-01 11 104825538 104825538 A G CASP4 Silent p.R66R 0.17 TCGA-44-2668-01 11 111749878 111749878 C T FDXACB1 5'UTR 0.15 TCGA-44-2668-01 11 1157860 1157860 C A MUC5AC Missense_Mutation p.H309Q 0.19 tolerated(0.12) benign(0.04) TCGA-44-2668-01 11 120008510 120008510 C A TRIM29 Missense_Mutation p.R77L 0.28 deleterious_low_confidence(0) possibly_damaging(0.66) TCGA-44-2668-01 11 124310713 124310713 T C OR8B8 Missense_Mutation p.N90S 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.899) TCGA-44-2668-01 11 1271072 1271072 C A MUC5B Missense_Mutation p.T4321N 0.10 benign(0.042) TCGA-44-2668-01 11 1905755 1905755 G T LSP1 Missense_Mutation p.D349Y 0.16 tolerated_low_confidence(0.2) probably_damaging(0.939) TCGA-44-2668-01 11 19197518 19197518 C T ZDHHC13 3'UTR 0.09 TCGA-44-2668-01 11 20623178 20623178 G T SLC6A5 Silent p.V169V 0.11 TCGA-44-2668-01 11 20668466 20668466 C G SLC6A5 Missense_Mutation p.P686A 0.13 deleterious(0) probably_damaging(0.973) TCGA-44-2668-01 11 2182108 2182108 C G INS-IGF2 Missense_Mutation p.G32R 0.14 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-44-2668-01 11 27076968 27076968 G C BBOX1 5'UTR 0.13 TCGA-44-2668-01 11 4661252 4661252 A G OR51D1 Missense_Mutation p.M78V 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-44-2668-01 11 47204070 47204070 C A PACSIN3 Missense_Mutation p.G32V 0.16 deleterious(0) probably_damaging(1) TCGA-44-2668-01 11 48347153 48347153 G A OR4C3 Missense_Mutation p.G221S 0.09 deleterious(0.03) benign(0.369) TCGA-44-2668-01 11 5020771 5020771 C A OR51L1 Missense_Mutation p.L187I 0.12 tolerated(0.69) probably_damaging(0.999) TCGA-44-2668-01 11 5254211 5254211 C A HBD Missense_Mutation p.A143S 0.17 tolerated(0.28) benign(0.069) TCGA-44-2668-01 11 55405957 55405957 C G OR4P4 Missense_Mutation p.L42V 0.29 tolerated(0.09) benign(0.399) TCGA-44-2668-01 11 55579766 55579766 C A OR5L1 Missense_Mutation p.T275N 0.12 deleterious(0) possibly_damaging(0.864) TCGA-44-2668-01 11 56237426 56237426 A T OR5M3 Missense_Mutation p.I183N 0.15 deleterious(0) possibly_damaging(0.721) TCGA-44-2668-01 11 60102398 60102398 C G MS4A6E Silent p.T10T 0.16 TCGA-44-2668-01 11 6262724 6262724 T A CNGA4 Silent p.P327P 0.09 TCGA-44-2668-01 11 72492187 72492187 G A STARD10 Missense_Mutation p.R14W 0.13 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-44-2668-01 11 88027474 88027474 C T CTSC Silent p.L364L 0.12 TCGA-44-2668-01 11 92531802 92531802 G A FAT3 Missense_Mutation p.D1875N 0.17 benign(0.39) TCGA-44-2668-01 12 10194219 10194219 G A CLEC9A Intron 0.23 TCGA-44-2668-01 12 119617367 119617367 G T HSPB8 Nonsense_Mutation p.E84* 0.08 TCGA-44-2668-01 12 126139092 126139092 A T TMEM132B Nonsense_Mutation p.K1025* 0.30 TCGA-44-2668-01 12 133256133 133256133 C G POLE Missense_Mutation p.K176N 0.17 deleterious(0.03) probably_damaging(0.949) TCGA-44-2668-01 12 13529158 13529158 C A C12orf36 Missense_Mutation p.S61I 0.07 possibly_damaging(0.607) TCGA-44-2668-01 12 15134401 15134401 G A PDE6H Silent p.G81G 0.24 TCGA-44-2668-01 12 21713354 21713354 T A GYS2 Missense_Mutation p.T379S 0.15 tolerated(1) benign(0.015) TCGA-44-2668-01 12 26217434 26217434 G C RASSF8 Missense_Mutation p.R36P 0.19 deleterious(0.01) possibly_damaging(0.56) TCGA-44-2668-01 12 29598250 29598250 C T OVCH1 Missense_Mutation p.G948S 0.31 deleterious(0.02) possibly_damaging(0.461) TCGA-44-2668-01 12 29598303 29598303 G T OVCH1 Missense_Mutation p.T930N 0.31 tolerated(0.06) benign(0.245) TCGA-44-2668-01 12 31253967 31253967 T G DDX11 Missense_Mutation p.V652G 0.19 deleterious(0) probably_damaging(0.999) TCGA-44-2668-01 12 40689416 40689416 A C LRRK2 Silent p.A1022A 0.17 TCGA-44-2668-01 12 43777518 43777518 C T ADAMTS20 Missense_Mutation p.C1547Y 0.21 deleterious(0.04) benign(0.132) TCGA-44-2668-01 12 45000952 45000952 C A NELL2 Missense_Mutation p.D605Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-44-2668-01 12 45269706 45269706 C A NELL2 Intron 0.23 TCGA-44-2668-01 12 45782068 45782068 G A ANO6 Silent p.V451V 0.20 TCGA-44-2668-01 12 4920245 4920245 G T KCNA6 Silent p.L346L 0.18 TCGA-44-2668-01 12 49436374 49436374 C G KMT2D Missense_Mutation p.G1946A 0.19 benign(0.194) TCGA-44-2668-01 12 50135944 50135944 G C TMBIM6 Missense_Mutation p.E9Q 0.41 deleterious_low_confidence(0) possibly_damaging(0.742) TCGA-44-2668-01 12 57864243 57864243 G A GLI1 Missense_Mutation p.G574R 0.23 tolerated(0.46) probably_damaging(0.95) TCGA-44-2668-01 12 58006692 58006692 C G ARHGEF25 Intron 0.38 TCGA-44-2668-01 12 6697022 6697022 C G CHD4 Missense_Mutation p.V1187L 0.05 tolerated(0.06) benign(0.001) TCGA-44-2668-01 12 85279239 85279239 A T SLC6A15 Silent p.P183P 0.37 TCGA-44-2668-01 12 89743161 89743161 T A DUSP6 Missense_Mutation p.Q339L 0.32 deleterious(0) probably_damaging(0.948) TCGA-44-2668-01 13 101795440 101795440 G A NALCN Silent p.I703I 0.13 TCGA-44-2668-01 13 107211830 107211830 C T ARGLU1 Missense_Mutation p.E175K 0.14 deleterious(0) possibly_damaging(0.486) TCGA-44-2668-01 13 25832811 25832811 C A MTMR6 Missense_Mutation p.R249I 0.21 deleterious(0) probably_damaging(1) TCGA-44-2668-01 13 26542719 26542719 G T ATP8A2 Missense_Mutation p.K1093N 0.15 deleterious(0.01) possibly_damaging(0.72) TCGA-44-2668-01 13 27333529 27333529 G A GPR12 Silent p.L146L 0.16 TCGA-44-2668-01 13 31205085 31205085 G T USPL1 Missense_Mutation p.K114N 0.14 tolerated(0.26) benign(0.009) TCGA-44-2668-01 13 41892955 41892955 G C NAA16 Missense_Mutation p.M51I 0.15 deleterious(0) possibly_damaging(0.559) TCGA-44-2668-01 13 47354087 47354087 C A ESD Missense_Mutation p.D195Y 0.13 deleterious(0) probably_damaging(0.965) TCGA-44-2668-01 13 94482465 94482465 G T GPC6 Silent p.R126R 0.19 TCGA-44-2668-01 13 95121061 95121061 G T DCT Missense_Mutation p.N178K 0.12 deleterious(0) probably_damaging(0.928) TCGA-44-2668-01 14 102494030 102494031 - CTG DYNC1H1 In_Frame_Ins p.L3042dup 0.09 TCGA-44-2668-01 14 106667813 106667813 G T IGHV3-20 Missense_Mutation p.S40Y 0.12 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-44-2668-01 14 20711267 20711267 G T OR11H4 Missense_Mutation p.G106V 0.25 deleterious(0) possibly_damaging(0.796) TCGA-44-2668-01 14 21899280 21899280 C A CHD8 Missense_Mutation p.V175L 0.14 tolerated_low_confidence(0.28) benign(0.028) TCGA-44-2668-01 14 21992890 21992890 G A SALL2 Silent p.T324T 0.22 TCGA-44-2668-01 14 23242826 23242826 G T SLC7A7 Missense_Mutation p.S510Y 0.24 tolerated(0.09) possibly_damaging(0.564) TCGA-44-2668-01 14 23842145 23842145 C G IL25 5'UTR 0.19 TCGA-44-2668-01 14 23853903 23853903 C T MYH6 Silent p.L1771L 0.13 TCGA-44-2668-01 14 24780263 24780263 G T LTB4R2 Silent p.R131R 0.14 TCGA-44-2668-01 14 64065848 64065848 T C WDR89 Silent p.E271E 0.19 TCGA-44-2668-01 14 73945268 73945268 G T HEATR4 3'UTR 0.16 TCGA-44-2668-01 14 75052556 75052556 C A LTBP2 Splice_Site p.X277_splice 0.17 TCGA-44-2668-01 14 76108196 76108196 G C FLVCR2 Missense_Mutation p.K488N 0.14 deleterious(0) possibly_damaging(0.526) TCGA-44-2668-01 14 77273815 77273815 G A ANGEL1 Missense_Mutation p.H303Y 0.16 tolerated(0.05) probably_damaging(1) TCGA-44-2668-01 14 94776131 94776131 C A SERPINA6 Missense_Mutation p.V276F 0.11 deleterious(0) probably_damaging(0.994) TCGA-44-2668-01 14 95884113 95884113 C A SYNE3 3'UTR 0.16 TCGA-44-2668-01 14 95910860 95910860 C A SYNE3 Missense_Mutation p.D580Y 0.12 deleterious(0) probably_damaging(0.996) TCGA-44-2668-01 15 22368980 22368980 C A OR4M2 Silent p.I135I 0.05 TCGA-44-2668-01 15 24923924 24923924 T G NPAP1 Missense_Mutation p.S970R 0.15 tolerated(0.28) benign(0.124) TCGA-44-2668-01 15 28200322 28200323 - T OCA2 Frame_Shift_Ins p.Q609Pfs*8 0.09 TCGA-44-2668-01 15 28211878 28211878 A T OCA2 Missense_Mutation p.W532R 0.12 tolerated(1) benign(0.06) TCGA-44-2668-01 15 28483346 28483346 C A HERC2 Missense_Mutation p.D1256Y 0.15 probably_damaging(0.989) TCGA-44-2668-01 15 34115267 34115267 C A RYR3 Missense_Mutation p.S3689Y 0.20 benign(0.011) TCGA-44-2668-01 15 45059966 45059966 A T TRIM69 Missense_Mutation p.Q500L 0.16 deleterious_low_confidence(0) benign(0.23) TCGA-44-2668-01 15 48063015 48063015 G A SEMA6D Missense_Mutation p.G752E 0.24 tolerated(0.06) benign(0.051) TCGA-44-2668-01 15 57731244 57731244 A G CGNL1 Silent p.S349S 0.20 TCGA-44-2668-01 15 62993362 62993362 C G TLN2 Missense_Mutation p.Q549E 0.23 deleterious(0.01) possibly_damaging(0.647) TCGA-44-2668-01 15 68631901 68631901 G A ITGA11 Missense_Mutation p.P405S 0.15 deleterious(0.03) possibly_damaging(0.893) TCGA-44-2668-01 15 75766070 75766070 C A PTPN9 Missense_Mutation p.V390L 0.19 deleterious(0) benign(0.066) TCGA-44-2668-01 15 90128938 90128938 G T TICRR Splice_Site p.X393_splice 0.30 TCGA-44-2668-01 15 93015490 93015490 G T C15orf32 Nonsense_Mutation p.G38* 0.09 TCGA-44-2668-01 16 1270609 1270609 C - CACNA1H Frame_Shift_Del p.T2226Sfs*36 0.17 TCGA-44-2668-01 16 15967411 15967411 C A FOPNL Missense_Mutation p.G129W 0.20 tolerated(0.12) probably_damaging(0.919) TCGA-44-2668-01 16 28331646 28331646 G T SBK1 Missense_Mutation p.G227W 0.18 deleterious(0) probably_damaging(0.996) TCGA-44-2668-01 16 31384649 31384649 G T ITGAX Nonsense_Mutation p.G816* 0.13 TCGA-44-2668-01 16 31424230 31424230 C A ITGAD Silent p.L593L 0.10 TCGA-44-2668-01 16 31429491 31429491 C A ITGAD Silent p.P865P 0.11 TCGA-44-2668-01 16 32265006 32265006 C A TP53TG3D Missense_Mutation p.P111H 0.07 tolerated_low_confidence(0.07) probably_damaging(0.95) TCGA-44-2668-01 16 53330938 53330938 A T CHD9 Nonsense_Mutation p.R1861* 0.17 TCGA-44-2668-01 16 68021439 68021439 G T DPEP2 Silent p.A477A 0.19 TCGA-44-2668-01 16 70765433 70765433 C T VAC14 Silent p.R542R 0.09 TCGA-44-2668-01 16 70841870 70841870 G T HYDIN Silent p.P4993P 0.15 TCGA-44-2668-01 17 10204269 10204269 C T MYH13 Silent p.%3D 0.05 TCGA-44-2668-01 17 10222113 10222113 C G MYH13 Missense_Mutation p.K1244N 0.08 deleterious(0) possibly_damaging(0.666) TCGA-44-2668-01 17 10408755 10408755 G T MYH1 Missense_Mutation p.L750M 0.10 deleterious(0.02) possibly_damaging(0.778) TCGA-44-2668-01 17 10408756 10408756 G T MYH1 Silent p.L749L 0.10 TCGA-44-2668-01 17 10426485 10426485 C A MYH2 Missense_Mutation p.K1865N 0.09 deleterious(0.01) benign(0.247) TCGA-44-2668-01 17 10428361 10428361 C A MYH2 Nonsense_Mutation p.G1562* 0.14 TCGA-44-2668-01 17 11514989 11514989 T C DNAH9 Missense_Mutation p.Y266H 0.06 benign(0.002) TCGA-44-2668-01 17 11520764 11520764 T C DNAH9 Missense_Mutation p.I314T 0.20 benign(0) TCGA-44-2668-01 17 12647645 12647645 G C MYOCD Missense_Mutation p.R288P 0.13 deleterious(0) probably_damaging(1) TCGA-44-2668-01 17 1385813 1385813 T A MYO1C Missense_Mutation p.S196C 0.20 deleterious(0) probably_damaging(1) TCGA-44-2668-01 17 16723389 16723389 G T AC022596.6 RNA 0.10 TCGA-44-2668-01 17 27614038 27614038 G A NUFIP2 Missense_Mutation p.S325L 0.09 tolerated(0.09) benign(0.085) TCGA-44-2668-01 17 28511912 28511912 T G NSRP1 Missense_Mutation p.S299R 0.18 tolerated(0.26) benign(0.001) TCGA-44-2668-01 17 33904575 33904575 G T PEX12 Missense_Mutation p.F54L 0.12 tolerated(0.48) benign(0.034) TCGA-44-2668-01 17 34192287 34192287 G T C17orf66 Missense_Mutation p.H84Q 0.19 tolerated(0.08) benign(0.324) TCGA-44-2668-01 17 34310883 34310883 C A CCL14 Missense_Mutation p.S95I 0.11 tolerated(0.06) possibly_damaging(0.739) TCGA-44-2668-01 17 37864639 37864639 G A ERBB2 Silent p.Q97Q 0.11 TCGA-44-2668-01 17 40344425 40344425 C T GHDC Silent p.R241R 0.13 TCGA-44-2668-01 17 45755523 45755523 C G KPNB1 Missense_Mutation p.L739V 0.08 deleterious(0) benign(0.439) TCGA-44-2668-01 17 48245036 48245036 A T SGCA Missense_Mutation p.H84L 0.18 tolerated(0.26) benign(0.016) TCGA-44-2668-01 17 53491543 53491543 T C MMD Missense_Mutation p.Y26C 0.07 deleterious(0.02) probably_damaging(0.987) TCGA-44-2668-01 17 54543774 54543774 C G ANKFN1 Missense_Mutation p.H542D 0.15 tolerated(0.12) benign(0.275) TCGA-44-2668-01 17 55184111 55184111 C T AKAP1 Missense_Mutation p.S429L 0.11 tolerated(0.4) benign(0) TCGA-44-2668-01 17 57970609 57970609 G A RPS6KB1 Missense_Mutation p.E22K 0.09 tolerated_low_confidence(0.33) benign(0.018) TCGA-44-2668-01 17 58256678 58256678 C A USP32 Missense_Mutation p.D1585Y 0.28 deleterious(0) probably_damaging(0.994) TCGA-44-2668-01 17 60754829 60754829 A T MRC2 Missense_Mutation p.K678N 0.23 tolerated(0.55) benign(0.008) TCGA-44-2668-01 17 63010527 63010527 C G GNA13 Missense_Mutation p.E328Q 0.11 tolerated(0.98) benign(0.366) TCGA-44-2668-01 17 63957643 63957643 C - CEP112 Frame_Shift_Del p.E604Kfs*9 0.10 TCGA-44-2668-01 17 66430737 66430737 C T WIPI1 Missense_Mutation p.D218N 0.15 tolerated(0.26) benign(0.032) TCGA-44-2668-01 17 67102211 67102211 C T ABCA6 Missense_Mutation p.R844H 0.12 tolerated(0.26) benign(0.075) TCGA-44-2668-01 17 72297289 72297289 G A DNAI2 Silent p.L323L 0.27 TCGA-44-2668-01 17 7577082 7577082 C A TP53 Nonsense_Mutation p.E286* 0.34 TCGA-44-2668-01 17 7734558 7734558 C G DNAH2 Missense_Mutation p.L4129V 0.04 possibly_damaging(0.776) TCGA-44-2668-01 17 7752089 7752089 G - KDM6B Frame_Shift_Del p.P829Lfs*65 0.15 TCGA-44-2668-01 17 77925310 77925310 T A TBC1D16 Missense_Mutation p.D343V 0.09 deleterious(0) probably_damaging(0.939) TCGA-44-2668-01 17 80151915 80151915 C A CCDC57 Missense_Mutation p.R240M 0.19 deleterious(0.04) possibly_damaging(0.717) TCGA-44-2668-01 17 80223565 80223565 C T CSNK1D Missense_Mutation p.G62R 0.11 deleterious_low_confidence(0) possibly_damaging(0.848) TCGA-44-2668-01 17 9792900 9792900 G T GLP2R Missense_Mutation p.G514C 0.17 deleterious(0.01) benign(0.011) TCGA-44-2668-01 18 12479746 12479746 C G SPIRE1 Missense_Mutation p.K452N 0.16 tolerated(0.37) possibly_damaging(0.742) TCGA-44-2668-01 18 14851711 14851711 A T ANKRD30B Silent p.V1137V 0.16 TCGA-44-2668-01 18 31319721 31319721 G T ASXL3 Nonsense_Mutation p.E785* 0.11 TCGA-44-2668-01 18 34324149 34324149 C A FHOD3 Nonsense_Mutation p.S1170* 0.16 TCGA-44-2668-01 18 43497731 43497731 G C EPG5 Nonsense_Mutation p.S1051* 0.05 TCGA-44-2668-01 18 61324130 61324130 G A SERPINB3 Missense_Mutation p.P235S 0.11 deleterious(0) probably_damaging(1) TCGA-44-2668-01 18 61654176 61654176 G T SERPINB8 Missense_Mutation p.K263N 0.23 deleterious(0.04) benign(0.03) TCGA-44-2668-01 18 63547963 63547963 C A CDH7 Missense_Mutation p.Q731K 0.14 deleterious(0.01) probably_damaging(0.983) TCGA-44-2668-01 19 16003139 16003139 C G CYP4F2 Missense_Mutation p.E169Q 0.13 tolerated(0.59) benign(0.013) TCGA-44-2668-01 19 17664237 17664237 T C FAM129C Silent p.S653S 0.15 TCGA-44-2668-01 19 19033223 19033223 G A DDX49 Missense_Mutation p.R179H 0.17 tolerated(0.07) benign(0.005) TCGA-44-2668-01 19 22193727 22193727 C A ZNF208 5'UTR 0.15 TCGA-44-2668-01 19 22951200 22951200 T A ZNF99 Missense_Mutation p.I45F 0.17 tolerated(0.09) benign(0.084) TCGA-44-2668-01 19 30936620 30936620 C A ZNF536 Silent p.P717P 0.24 TCGA-44-2668-01 19 31767328 31767328 C A TSHZ3 3'UTR 0.21 TCGA-44-2668-01 19 33464996 33464996 G C C19orf40 Missense_Mutation p.E92Q 0.14 tolerated(0.05) probably_damaging(0.994) TCGA-44-2668-01 19 36393498 36393498 G T HCST Translation_Start_Site p.M1? 0.14 deleterious_low_confidence(0) unknown(0) TCGA-44-2668-01 19 40587733 40587733 C A ZNF780A Silent p.R76R 0.08 TCGA-44-2668-01 19 40587734 40587734 C A ZNF780A Missense_Mutation p.R76L 0.09 tolerated(0.55) benign(0.007) TCGA-44-2668-01 19 40587735 40587735 G A ZNF780A Missense_Mutation p.R76W 0.09 tolerated(0.22) benign(0) TCGA-44-2668-01 19 42510079 42510079 G C GRIK5 Missense_Mutation p.Q687E 0.18 tolerated(0.44) probably_damaging(0.992) TCGA-44-2668-01 19 45406198 45406198 G T TOMM40 Intron 0.23 TCGA-44-2668-01 19 50188237 50188237 G A PRMT1 Silent p.E234E 0.18 TCGA-44-2668-01 19 55508760 55508760 C T NLRP2 Silent p.V985V 0.18 TCGA-44-2668-01 19 57327996 57327996 C A PEG3 Missense_Mutation p.G605V 0.19 deleterious(0.03) possibly_damaging(0.477) TCGA-44-2668-01 19 58384132 58384132 T A ZNF814 3'UTR 0.13 TCGA-44-2668-01 19 6897298 6897298 G A EMR1 Missense_Mutation p.G126D 0.09 tolerated(0.13) benign(0.039) TCGA-44-2668-01 19 9024497 9024497 C A MUC16 Splice_Site p.X12346_splice 0.05 TCGA-44-2668-01 19 9049935 9049935 C G MUC16 Missense_Mutation p.E10566Q 0.14 benign(0.016) TCGA-44-2668-01 19 9057909 9057909 G C MUC16 Missense_Mutation p.T9846S 0.16 unknown(0) TCGA-44-2668-01 19 9075971 9075971 T G MUC16 Silent p.P3825P 0.16 TCGA-44-2668-01 1 109812142 109812142 G A CELSR2 Silent p.T2303T 0.13 TCGA-44-2668-01 1 110019410 110019410 C A SYPL2 Silent p.I89I 0.14 TCGA-44-2668-01 1 110086511 110086511 C A GPR61 Silent p.L289L 0.17 TCGA-44-2668-01 1 114310969 114310969 G A RSBN1 Silent p.T567T 0.12 TCGA-44-2668-01 1 115267878 115267878 T C CSDE1 Missense_Mutation p.K619E 0.04 tolerated(0.13) benign(0.019) TCGA-44-2668-01 1 152286758 152286758 C A FLG Nonsense_Mutation p.E202* 0.06 TCGA-44-2668-01 1 152538599 152538599 C A LCE3E Missense_Mutation p.C29F 0.22 tolerated_low_confidence(0.07) unknown(0) TCGA-44-2668-01 1 154296762 154296762 G A AQP10 Missense_Mutation p.G238S 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-44-2668-01 1 154319215 154319215 C T ATP8B2 Silent p.P1081P 0.16 TCGA-44-2668-01 1 158325684 158325684 T C CD1E Silent p.H231H 0.32 TCGA-44-2668-01 1 158548787 158548787 G A OR10X1 Silent p.I301I 0.14 TCGA-44-2668-01 1 158583603 158583603 G T SPTA1 Nonsense_Mutation p.C2299* 0.19 TCGA-44-2668-01 1 161165312 161165312 C A ADAMTS4 Nonsense_Mutation p.E402* 0.10 TCGA-44-2668-01 1 162353098 162353098 G A C1orf226 Silent p.L191L 0.13 TCGA-44-2668-01 1 167088532 167088532 C A DUSP27 Missense_Mutation p.H162N 0.21 deleterious(0) probably_damaging(1) TCGA-44-2668-01 1 172437600 172437600 T A C1orf105 Missense_Mutation p.Y140N 0.10 deleterious(0.01) possibly_damaging(0.683) TCGA-44-2668-01 1 172437623 172437623 C A C1orf105 Silent p.P147P 0.09 TCGA-44-2668-01 1 172628515 172628515 G T FASLG Silent p.P58P 0.21 TCGA-44-2668-01 1 175037033 175037033 G T TNN 5'UTR 0.28 TCGA-44-2668-01 1 177250580 177250580 G T BRINP2 Silent p.V756V 0.09 TCGA-44-2668-01 1 179520370 179520370 G T NPHS2 Missense_Mutation p.P364T 0.08 tolerated(0.1) benign(0.026) TCGA-44-2668-01 1 179621246 179621246 G A TDRD5 Missense_Mutation p.E692K 0.15 tolerated(0.06) possibly_damaging(0.598) TCGA-44-2668-01 1 179782940 179782940 C A FAM163A Silent p.T40T 0.09 TCGA-44-2668-01 1 18960982 18960982 C G PAX7 Missense_Mutation p.Q91E 0.17 tolerated(0.14) probably_damaging(0.992) TCGA-44-2668-01 1 196395118 196395118 C A KCNT2 Missense_Mutation p.D329Y 0.27 deleterious(0) possibly_damaging(0.898) TCGA-44-2668-01 1 198668802 198668802 C T PTPRC Silent p.L136L 0.07 TCGA-44-2668-01 1 204588984 204588984 G T LRRN2 Missense_Mutation p.S46Y 0.16 deleterious(0) possibly_damaging(0.548) TCGA-44-2668-01 1 205116682 205116682 G C DSTYK 3'UTR 0.09 TCGA-44-2668-01 1 206785640 206785640 C A EIF2D Missense_Mutation p.R19M 0.20 deleterious(0) probably_damaging(0.999) TCGA-44-2668-01 1 214705938 214705938 C A PTPN14 Intron 0.11 TCGA-44-2668-01 1 216062334 216062334 A T USH2A Missense_Mutation p.W2553R 0.09 probably_damaging(1) TCGA-44-2668-01 1 216251604 216251604 C G USH2A Missense_Mutation p.W1800S 0.26 probably_damaging(1) TCGA-44-2668-01 1 216251649 216251649 G C USH2A Missense_Mutation p.T1785R 0.11 possibly_damaging(0.908) TCGA-44-2668-01 1 216372980 216372980 G A USH2A Missense_Mutation p.A1267V 0.10 benign(0.001) TCGA-44-2668-01 1 219383918 219383918 A T LYPLAL1 Nonsense_Mutation p.R136* 0.17 TCGA-44-2668-01 1 220311269 220311269 A G IARS2 Missense_Mutation p.K687E 0.09 tolerated(0.33) benign(0.41) TCGA-44-2668-01 1 220825386 220825386 G T MARK1 Missense_Mutation p.V544F 0.11 tolerated(0.19) benign(0.027) TCGA-44-2668-01 1 233394394 233394394 C A PCNXL2 Missense_Mutation p.S405I 0.17 deleterious_low_confidence(0) benign(0.027) TCGA-44-2668-01 1 236384244 236384244 G A ERO1LB Silent p.L411L 0.12 TCGA-44-2668-01 1 238090685 238090685 G C RP11-193H5.1 RNA 0.10 TCGA-44-2668-01 1 240072343 240072343 G C CHRM3 Missense_Mutation p.W531S 0.19 deleterious(0) probably_damaging(0.998) TCGA-44-2668-01 1 240072344 240072344 G T CHRM3 Missense_Mutation p.W531C 0.19 deleterious(0) probably_damaging(0.99) TCGA-44-2668-01 1 240370500 240370500 C A FMN2 Silent p.V796V 0.19 TCGA-44-2668-01 1 240371545 240371545 C A FMN2 Missense_Mutation p.P1145T 0.17 unknown(0) TCGA-44-2668-01 1 247875336 247875336 C A OR6F1 Missense_Mutation p.C241F 0.18 deleterious(0.02) probably_damaging(1) TCGA-44-2668-01 1 248224602 248224602 G T OR2L3 Missense_Mutation p.V207L 0.09 tolerated(1) benign(0.006) TCGA-44-2668-01 1 248308701 248308701 C A OR2M5 Missense_Mutation p.N84K 0.27 deleterious(0) possibly_damaging(0.792) TCGA-44-2668-01 1 248551725 248551725 G T OR2T6 Missense_Mutation p.K272N 0.08 deleterious(0.01) probably_damaging(0.965) TCGA-44-2668-01 1 248737350 248737350 C G OR2T34 Missense_Mutation p.A237P 0.10 deleterious(0) benign(0.126) TCGA-44-2668-01 1 249107242 249107242 G A SH3BP5L Silent p.I219I 0.14 TCGA-44-2668-01 1 31194492 31194492 G T MATN1 Silent p.V67V 0.10 TCGA-44-2668-01 1 32163594 32163594 G T COL16A1 Silent p.S190S 0.08 TCGA-44-2668-01 1 38511276 38511276 C A POU3F1 Missense_Mutation p.K380N 0.23 deleterious(0) possibly_damaging(0.886) TCGA-44-2668-01 1 45253101 45253101 G A BEST4 Nonsense_Mutation p.Q64* 0.13 TCGA-44-2668-01 1 50885024 50885024 C T DMRTA2 Silent p.R314R 0.22 TCGA-44-2668-01 1 54348884 54348884 G C YIPF1 Missense_Mutation p.P33A 0.06 tolerated(0.22) benign(0.001) TCGA-44-2668-01 1 75055428 75055428 G T C1orf173 Missense_Mutation p.S688Y 0.18 deleterious(0) probably_damaging(0.991) TCGA-44-2668-01 1 75055641 75055641 C G C1orf173 Missense_Mutation p.R617T 0.14 deleterious(0.02) benign(0) TCGA-44-2668-01 1 85648858 85648858 A G SYDE2 Silent p.N489N 0.11 TCGA-44-2668-01 1 86375647 86375647 C - COL24A1 Frame_Shift_Del p.E886Kfs*50 0.14 TCGA-44-2668-01 1 90179864 90179864 C T LRRC8C Silent p.L579L 0.14 TCGA-44-2668-01 1 92948493 92948493 C T GFI1 Missense_Mutation p.E76K 0.22 tolerated_low_confidence(0.09) benign(0.026) TCGA-44-2668-01 20 24964571 24964571 C A APMAP Silent p.L60L 0.22 TCGA-44-2668-01 20 25667111 25667111 G C ZNF337 5'UTR 0.12 TCGA-44-2668-01 20 30388777 30388777 A G TPX2 Missense_Mutation p.H713R 0.26 deleterious(0) probably_damaging(1) TCGA-44-2668-01 20 30433405 30433405 C A FOXS1 5'UTR 0.25 TCGA-44-2668-01 20 31619551 31619551 G T BPIFB6 Splice_Site p.X33_splice 0.10 TCGA-44-2668-01 20 34021748 34021748 G T GDF5 Missense_Mutation p.Q489K 0.09 deleterious(0) benign(0.095) TCGA-44-2668-01 20 62839147 62839147 G T MYT1 Nonsense_Mutation p.E200* 0.10 TCGA-44-2668-01 20 869027 869027 G A ANGPT4 Missense_Mutation p.T174I 0.19 deleterious(0) possibly_damaging(0.831) TCGA-44-2668-01 21 10920118 10920118 C G TPTE Missense_Mutation p.S379T 0.06 tolerated(0.09) possibly_damaging(0.513) TCGA-44-2668-01 21 27945230 27945230 T A CYYR1 Silent p.P10P 0.14 TCGA-44-2668-01 21 30252230 30252230 C A N6AMT1 Missense_Mutation p.V120L 0.21 benign(0.019) TCGA-44-2668-01 21 32185390 32185390 C A KRTAP8-1 Missense_Mutation p.G50V 0.11 tolerated_low_confidence(0.07) probably_damaging(0.993) TCGA-44-2668-01 21 43706025 43706025 G T ABCG1 Silent p.R298R 0.12 TCGA-44-2668-01 21 43796717 43796717 T C TMPRSS3 Missense_Mutation p.Y376C 0.12 deleterious(0) probably_damaging(1) TCGA-44-2668-01 21 44441505 44441505 G T PKNOX1 Silent p.T271T 0.12 TCGA-44-2668-01 22 18613793 18613793 G A TUBA8 Missense_Mutation p.E414K 0.14 deleterious_low_confidence(0) probably_damaging(0.929) TCGA-44-2668-01 22 26860726 26860726 T A HPS4 Silent p.T290T 0.10 TCGA-44-2668-01 22 29656366 29656366 T A RHBDD3 Missense_Mutation p.Q311L 0.10 tolerated(0.13) benign(0.004) TCGA-44-2668-01 22 32482262 32482262 T A SLC5A1 Silent p.V359V 0.20 TCGA-44-2668-01 22 32631037 32631037 G T SLC5A4 Nonsense_Mutation p.Y236* 0.18 TCGA-44-2668-01 22 32934062 32934062 T C SYN3 Missense_Mutation p.T318A 0.10 deleterious(0.05) unknown(0) TCGA-44-2668-01 2 103059756 103059756 G - IL18RAP Frame_Shift_Del p.E299Kfs*14 0.11 TCGA-44-2668-01 2 107041047 107041047 A T RGPD3 Missense_Mutation p.S1126T 0.09 deleterious(0.01) benign(0.375) TCGA-44-2668-01 2 121726405 121726405 C G GLI2 Silent p.P253P 0.13 TCGA-44-2668-01 2 132273932 132273932 G T AC093838.4 RNA 0.09 TCGA-44-2668-01 2 141130585 141130585 C A LRP1B Missense_Mutation p.C3587F 0.10 possibly_damaging(0.639) TCGA-44-2668-01 2 168106863 168106863 G A XIRP2 Silent p.L2987L 0.09 TCGA-44-2668-01 2 179584084 179584084 T C TTN Silent p.S8011S 0.09 TCGA-44-2668-01 2 183723563 183723563 T A FRZB Splice_Site p.X160_splice 0.17 TCGA-44-2668-01 2 217123969 217123969 C G MARCH4 3'UTR 0.07 TCGA-44-2668-01 2 220397143 220397143 G T ASIC4 Missense_Mutation p.R448L 0.20 tolerated(0.13) benign(0.023) TCGA-44-2668-01 2 222428583 222428583 C A EPHA4 Missense_Mutation p.G231C 0.16 deleterious(0) probably_damaging(0.996) TCGA-44-2668-01 2 225266018 225266018 G T FAM124B Nonsense_Mutation p.Y156* 0.10 TCGA-44-2668-01 2 226447291 226447291 C T NYAP2 Silent p.H386H 0.21 TCGA-44-2668-01 2 230020666 230020666 C A PID1 Missense_Mutation p.M46I 0.11 tolerated_low_confidence(0.07) benign(0.052) TCGA-44-2668-01 2 238289824 238289824 C A COL6A3 Missense_Mutation p.R544L 0.09 probably_damaging(1) TCGA-44-2668-01 2 242092932 242092932 G T PPP1R7 Missense_Mutation p.G32W 0.12 deleterious(0.01) unknown(0) TCGA-44-2668-01 2 40657385 40657385 G T SLC8A1 Silent p.T12T 0.10 TCGA-44-2668-01 2 43801863 43801863 C T THADA Silent p.L447L 0.08 TCGA-44-2668-01 2 43992633 43992633 C T PLEKHH2 Missense_Mutation p.P1460S 0.12 deleterious(0.03) benign(0.014) TCGA-44-2668-01 2 48896946 48896946 C T STON1-GTF2A1L Missense_Mutation p.T1059I 0.12 deleterious(0.03) benign(0.214) TCGA-44-2668-01 2 50765774 50765774 C A NRXN1 Missense_Mutation p.G627V 0.13 deleterious(0.02) probably_damaging(0.993) TCGA-44-2668-01 2 50765775 50765775 C A NRXN1 Splice_Site p.X627_splice 0.13 TCGA-44-2668-01 2 64863748 64863748 G A SERTAD2 Silent p.F86F 0.10 TCGA-44-2668-01 2 73115540 73115540 G - SPR Frame_Shift_Del p.T135Lfs*5 0.11 TCGA-44-2668-01 2 86371798 86371798 C T IMMT Missense_Mutation p.G624R 0.10 deleterious(0) probably_damaging(1) TCGA-44-2668-01 2 95539155 95539155 C A TEKT4 Intron 0.29 TCGA-44-2668-01 3 112648181 112648181 C A CD200R1 Nonsense_Mutation p.E126* 0.18 TCGA-44-2668-01 3 119306729 119306729 G A ADPRH 3'UTR 0.11 TCGA-44-2668-01 3 121341414 121341414 A T FBXO40 Missense_Mutation p.T380S 0.22 deleterious(0) probably_damaging(1) TCGA-44-2668-01 3 138762887 138762887 G T PRR23C Silent p.G192G 0.26 TCGA-44-2668-01 3 149374727 149374727 C G WWTR1 Missense_Mutation p.E123Q 0.22 deleterious(0) probably_damaging(0.964) TCGA-44-2668-01 3 150377865 150377865 C G FAM194A Missense_Mutation p.K602N 0.29 deleterious(0) probably_damaging(0.988) TCGA-44-2668-01 3 150644624 150644624 G T CLRN1 3'Flank 0.16 TCGA-44-2668-01 3 165548428 165548428 G T BCHE Missense_Mutation p.P132T 0.13 deleterious(0.03) probably_damaging(0.967) TCGA-44-2668-01 3 172835526 172835526 C G SPATA16 5'UTR 0.10 TCGA-44-2668-01 3 178921566 178921566 G A PIK3CA Missense_Mutation p.D350N 0.15 tolerated(0.05) possibly_damaging(0.688) TCGA-44-2668-01 3 183013262 183013262 T A MCF2L2 Nonsense_Mutation p.K501* 0.30 TCGA-44-2668-01 3 194081543 194081543 G A LRRC15 Missense_Mutation p.S83L 0.32 deleterious(0.01) probably_damaging(0.945) TCGA-44-2668-01 3 30732969 30732969 C T TGFBR2 Missense_Mutation p.R553C 0.19 deleterious(0) probably_damaging(1) TCGA-44-2668-01 3 31871586 31871586 T A OSBPL10 Silent p.A225A 0.16 TCGA-44-2668-01 3 4748018 4748018 A C ITPR1 Missense_Mutation p.I1594L 0.14 deleterious(0) benign(0.073) TCGA-44-2668-01 3 49050698 49050698 C G WDR6 Missense_Mutation p.C607W 0.14 tolerated(0.2) probably_damaging(0.965) TCGA-44-2668-01 3 52430796 52430796 G A DNAH1 Missense_Mutation p.D3865N 0.17 benign(0.024) TCGA-44-2668-01 3 58555486 58555486 C A FAM107A Silent p.L34L 0.18 TCGA-44-2668-01 3 6903215 6903215 G T GRM7 Missense_Mutation p.G47V 0.38 deleterious(0) probably_damaging(0.999) TCGA-44-2668-01 3 7348280 7348280 A G GRM7 Missense_Mutation p.Q325R 0.15 tolerated(0.15) benign(0.12) TCGA-44-2668-01 3 74315674 74315674 C G CNTN3 Missense_Mutation p.D982H 0.11 deleterious(0.04) probably_damaging(1) TCGA-44-2668-01 3 96706286 96706286 G T EPHA6 Missense_Mutation p.R188L 0.25 deleterious(0) probably_damaging(0.999) TCGA-44-2668-01 4 100451036 100451036 C A C4orf17 Missense_Mutation p.S156Y 0.14 tolerated(1) possibly_damaging(0.767) TCGA-44-2668-01 4 110670479 110670479 T A CFI Splice_Site p.X349_splice 0.16 TCGA-44-2668-01 4 114279402 114279402 A G ANK2 Missense_Mutation p.T3210A 0.21 benign(0.003) TCGA-44-2668-01 4 118005390 118005390 C A TRAM1L1 3'UTR 0.12 TCGA-44-2668-01 4 118005823 118005823 C T TRAM1L1 Missense_Mutation p.D243N 0.18 tolerated(0.07) benign(0.049) TCGA-44-2668-01 4 126328260 126328260 G T FAT4 Missense_Mutation p.V1845L 0.12 benign(0.162) TCGA-44-2668-01 4 134073054 134073054 C A PCDH10 Missense_Mutation p.R587S 0.21 tolerated(0.73) benign(0.198) TCGA-44-2668-01 4 167713350 167713350 G T SPOCK3 Missense_Mutation p.T230K 0.25 tolerated(0.57) benign(0.158) TCGA-44-2668-01 4 174219404 174219404 C T GALNT7 Silent p.T368T 0.23 TCGA-44-2668-01 4 17524543 17524543 C A CLRN2 Missense_Mutation p.L104I 0.15 deleterious(0.01) possibly_damaging(0.492) TCGA-44-2668-01 4 187518096 187518096 C - FAT1 Frame_Shift_Del p.V4200Ffs*6 0.10 TCGA-44-2668-01 4 38097635 38097635 G T TBC1D1 Missense_Mutation p.W774C 0.13 deleterious(0) probably_damaging(0.999) TCGA-44-2668-01 4 38097636 38097636 G T TBC1D1 Nonsense_Mutation p.E775* 0.13 TCGA-44-2668-01 4 48381849 48381849 C G SLAIN2 Silent p.A282A 0.14 TCGA-44-2668-01 4 55156695 55156695 G T PDGFRA Missense_Mutation p.E1032D 0.10 tolerated(0.34) benign(0.007) TCGA-44-2668-01 4 57796165 57796165 G C REST Missense_Mutation p.E381Q 0.12 deleterious(0) probably_damaging(0.996) TCGA-44-2668-01 4 57896476 57896476 G T POLR2B Missense_Mutation p.V1116F 0.15 deleterious(0) possibly_damaging(0.493) TCGA-44-2668-01 4 69973836 69973836 G T UGT2B7 Missense_Mutation p.R369I 0.13 deleterious(0) benign(0.275) TCGA-44-2668-01 4 81207742 81207742 C G FGF5 Missense_Mutation p.S241R 0.18 tolerated_low_confidence(0.52) benign(0.001) TCGA-44-2668-01 4 82096115 82096115 T A PRKG2 Splice_Site p.X154_splice 0.20 TCGA-44-2668-01 4 83626448 83626448 G A SCD5 Silent p.S117S 0.09 TCGA-44-2668-01 4 90857222 90857222 C G MMRN1 Missense_Mutation p.N797K 0.10 tolerated(0.2) benign(0.282) TCGA-44-2668-01 4 94159624 94159624 G T GRID2 Missense_Mutation p.G410C 0.10 deleterious(0.01) probably_damaging(0.957) TCGA-44-2668-01 4 94436452 94436452 G T GRID2 Nonsense_Mutation p.G695* 0.26 TCGA-44-2668-01 4 95197502 95197502 G T SMARCAD1 Silent p.A607A 0.16 TCGA-44-2668-01 4 96140295 96140295 G T UNC5C Silent p.P490P 0.16 TCGA-44-2668-01 5 1213681 1213681 C A SLC6A19 Missense_Mutation p.T256K 0.22 deleterious(0.03) possibly_damaging(0.903) TCGA-44-2668-01 5 127516628 127516628 T A SLC12A2 Missense_Mutation p.C1052S 0.28 tolerated(0.1) benign(0.029) TCGA-44-2668-01 5 127727777 127727777 T A FBN2 Missense_Mutation p.T513S 0.29 tolerated(0.07) possibly_damaging(0.698) TCGA-44-2668-01 5 137593429 137593429 C A GFRA3 Silent p.G228G 0.28 TCGA-44-2668-01 5 140554394 140554394 G C PCDHB7 Missense_Mutation p.V660L 0.14 deleterious_low_confidence(0.03) possibly_damaging(0.643) TCGA-44-2668-01 5 140562928 140562928 C G PCDHB16 Missense_Mutation p.S265C 0.12 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-44-2668-01 5 14746065 14746065 C A ANKH Missense_Mutation p.A277S 0.25 deleterious(0) possibly_damaging(0.61) TCGA-44-2668-01 5 151042996 151042996 G A SPARC 3'UTR 0.29 TCGA-44-2668-01 5 169506137 169506137 C A DOCK2 Nonsense_Mutation p.S1718* 0.44 TCGA-44-2668-01 5 24509715 24509715 C A CDH10 Missense_Mutation p.V406L 0.31 deleterious(0.02) possibly_damaging(0.558) TCGA-44-2668-01 5 31305452 31305452 C A CDH6 Missense_Mutation p.Q391K 0.21 tolerated(0.06) benign(0.039) TCGA-44-2668-01 5 31322949 31322949 T A CDH6 Missense_Mutation p.L636Q 0.19 deleterious(0.03) probably_damaging(0.995) TCGA-44-2668-01 5 31526186 31526186 C A DROSHA Missense_Mutation p.R285I 0.33 deleterious_low_confidence(0) benign(0.193) TCGA-44-2668-01 5 35876456 35876456 C G IL7R Silent p.P416P 0.20 TCGA-44-2668-01 5 7698359 7698359 G T ADCY2 Splice_Site p.X328_splice 0.19 TCGA-44-2668-01 6 107531724 107531724 C G PDSS2 Missense_Mutation p.M309I 0.15 tolerated(0.35) benign(0.001) TCGA-44-2668-01 6 135611635 135611635 C T AHI1 Missense_Mutation p.E1172K 0.06 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-44-2668-01 6 159654335 159654335 T A FNDC1 Missense_Mutation p.S931T 0.12 deleterious_low_confidence(0.05) unknown(0) TCGA-44-2668-01 6 26468562 26468562 G A BTN2A1 Missense_Mutation p.E457K 0.11 deleterious(0) possibly_damaging(0.659) TCGA-44-2668-01 6 27858239 27858239 C G HIST1H3J Missense_Mutation p.C111S 0.13 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-44-2668-01 6 31740879 31740879 G A VWA7 Silent p.A313A 0.18 TCGA-44-2668-01 6 32184741 32184741 G T NOTCH4 Silent p.L614L 0.11 TCGA-44-2668-01 6 51768419 51768419 G C PKHD1 Missense_Mutation p.I2324M 0.11 deleterious(0) probably_damaging(0.981) TCGA-44-2668-01 6 54805781 54805781 C A FAM83B Nonsense_Mutation p.S671* 0.06 TCGA-44-2668-01 6 55223728 55223728 G A GFRAL Silent p.V248V 0.20 TCGA-44-2668-01 6 6224933 6224933 C A F13A1 Missense_Mutation p.G320V 0.11 deleterious(0) probably_damaging(0.997) TCGA-44-2668-01 6 69349249 69349249 G T BAI3 Missense_Mutation p.G228C 0.14 tolerated(0.09) probably_damaging(0.997) TCGA-44-2668-01 6 7594075 7594075 G T SNRNP48 Nonsense_Mutation p.E89* 0.08 TCGA-44-2668-01 7 107013135 107013135 C T COG5 Missense_Mutation p.S278N 0.17 tolerated(0.44) benign(0.008) TCGA-44-2668-01 7 112424746 112424746 C A TMEM168 Missense_Mutation p.L45F 0.17 tolerated(0.08) benign(0.383) TCGA-44-2668-01 7 114284743 114284743 G T FOXP2 Silent p.S356S 0.09 TCGA-44-2668-01 7 121608168 121608168 T C PTPRZ1 Silent p.H96H 0.21 TCGA-44-2668-01 7 122634999 122634999 G A TAS2R16 Silent p.A230A 0.11 TCGA-44-2668-01 7 124475408 124475408 C G POT1 Missense_Mutation p.R477T 0.12 tolerated(0.2) benign(0.002) TCGA-44-2668-01 7 127253901 127253901 A T PAX4 Missense_Mutation p.S149R 0.08 tolerated(0.13) benign(0.015) TCGA-44-2668-01 7 138745860 138745860 G T ZC3HAV1 Missense_Mutation p.S673Y 0.15 tolerated(0.1) probably_damaging(0.974) TCGA-44-2668-01 7 138764850 138764850 G C ZC3HAV1 Missense_Mutation p.I279M 0.05 tolerated(0.11) benign(0.188) TCGA-44-2668-01 7 142143691 142143691 G T TRBV6-7 Missense_Mutation p.P102H 0.15 tolerated(0.15) benign(0.03) TCGA-44-2668-01 7 142749605 142749605 C G OR6V1 Silent p.P56P 0.14 TCGA-44-2668-01 7 146741088 146741088 G T CNTNAP2 Silent p.L164L 0.10 TCGA-44-2668-01 7 146825920 146825920 T G CNTNAP2 Missense_Mutation p.S359A 0.17 tolerated(0.34) benign(0.079) TCGA-44-2668-01 7 149419947 149419947 G T KRBA1 Silent p.R224R 0.17 TCGA-44-2668-01 7 154684104 154684104 T A DPP6 Missense_Mutation p.S838T 0.19 tolerated(0.49) benign(0.019) TCGA-44-2668-01 7 154684208 154684208 C A DPP6 3'UTR 0.10 TCGA-44-2668-01 7 27182747 27182747 C T HOXA5 Silent p.A160A 0.14 TCGA-44-2668-01 7 51096323 51096323 C T COBL Missense_Mutation p.E824K 0.13 tolerated(0.59) benign(0.367) TCGA-44-2668-01 7 57188289 57188289 A T ZNF479 Missense_Mutation p.F278Y 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-44-2668-01 7 57188826 57188826 G T ZNF479 Missense_Mutation p.P99Q 0.12 deleterious(0.02) possibly_damaging(0.856) TCGA-44-2668-01 7 92765125 92765125 C - SAMD9L Frame_Shift_Del p.D54Tfs*3 0.13 TCGA-44-2668-01 8 106814500 106814500 G C ZFPM2 Missense_Mutation p.Q730H 0.12 deleterious(0.04) probably_damaging(0.997) TCGA-44-2668-01 8 110334668 110334668 T C NUDCD1 Missense_Mutation p.D48G 0.12 deleterious(0) benign(0.367) TCGA-44-2668-01 8 110396316 110396316 C T PKHD1L1 Silent p.T145T 0.12 TCGA-44-2668-01 8 110477365 110477365 G T PKHD1L1 Silent p.G2768G 0.11 TCGA-44-2668-01 8 113304844 113304844 C G CSMD3 Missense_Mutation p.G2904R 0.07 deleterious(0) probably_damaging(0.995) TCGA-44-2668-01 8 113988108 113988108 G T CSMD3 Missense_Mutation p.Q434K 0.09 tolerated(0.93) benign(0) TCGA-44-2668-01 8 124033690 124033690 C A DERL1 Missense_Mutation p.G168V 0.12 deleterious(0) probably_damaging(0.968) TCGA-44-2668-01 8 133637568 133637568 C A LRRC6 Missense_Mutation p.L262F 0.21 deleterious(0) benign(0.433) TCGA-44-2668-01 8 139380193 139380193 C T FAM135B Missense_Mutation p.V12I 0.05 deleterious(0.03) benign(0.038) TCGA-44-2668-01 8 139628254 139628254 G C COL22A1 Missense_Mutation p.P1305R 0.22 unknown(0) TCGA-44-2668-01 8 140715079 140715079 T C KCNK9 Missense_Mutation p.N53D 0.12 tolerated(0.08) benign(0.111) TCGA-44-2668-01 8 141712746 141712746 G A PTK2 Nonsense_Mutation p.Q764* 0.11 TCGA-44-2668-01 8 145027963 145027963 C T PLEC 5'Flank 0.14 TCGA-44-2668-01 8 145747961 145747961 G A LRRC24 Silent p.F480F 0.16 TCGA-44-2668-01 8 1497613 1497613 C A DLGAP2 Missense_Mutation p.Q252K 0.11 tolerated(0.54) benign(0.001) TCGA-44-2668-01 8 19818481 19818481 C G LPL Silent p.L403L 0.17 TCGA-44-2668-01 8 24771353 24771353 G T NEFM Missense_Mutation p.R16L 0.12 deleterious(0.04) unknown(0) TCGA-44-2668-01 8 26220330 26220330 G A PPP2R2A Missense_Mutation p.M266I 0.24 deleterious(0.01) possibly_damaging(0.454) TCGA-44-2668-01 8 37735071 37735071 T G RAB11FIP1 Splice_Site p.X124_splice 0.23 TCGA-44-2668-01 8 63998555 63998555 G A TTPA Missense_Mutation p.S9L 0.56 tolerated_low_confidence(0.34) benign(0) TCGA-44-2668-01 8 89053922 89053922 C A MMP16 Missense_Mutation p.G531C 0.23 deleterious(0) probably_damaging(1) TCGA-44-2668-01 8 92082483 92082483 G T OTUD6B 5'UTR 0.41 TCGA-44-2668-01 8 95504896 95504896 T C KIAA1429 Missense_Mutation p.T1598A 0.10 deleterious(0.04) probably_damaging(0.997) TCGA-44-2668-01 8 95952305 95952305 G C TP53INP1 Missense_Mutation p.Q86E 0.12 tolerated(0.2) benign(0.011) TCGA-44-2668-01 9 101216375 101216375 G T GABBR2 Missense_Mutation p.T375K 0.15 tolerated(0.71) benign(0.304) TCGA-44-2668-01 9 108123471 108123471 G C SLC44A1 Splice_Site p.X254_splice 0.11 TCGA-44-2668-01 9 124062262 124062262 G A GSN Silent p.Q41Q 0.30 TCGA-44-2668-01 9 129957388 129957388 G T RALGPS1 Missense_Mutation p.G310V 0.16 tolerated(0.21) benign(0.002) TCGA-44-2668-01 9 19424744 19424744 G T ACER2 Missense_Mutation p.Q90H 0.13 deleterious(0) probably_damaging(1) TCGA-44-2668-01 9 32632534 32632534 C T TAF1L Missense_Mutation p.R1015H 0.20 deleterious(0) probably_damaging(1) TCGA-44-2668-01 9 33467207 33467207 C A NOL6 Missense_Mutation p.Q593H 0.14 deleterious(0) probably_damaging(0.997) TCGA-44-2668-01 9 65506368 65506368 G T SPATA31A7 Missense_Mutation p.L398I 0.10 deleterious(0.03) possibly_damaging(0.613) TCGA-44-2668-01 9 65508135 65508135 C T SPATA31A7 Splice_Site p.X83_splice 0.10 TCGA-44-2668-01 9 8465591 8465591 C A PTPRD Missense_Mutation p.D1197Y 0.19 tolerated(0.09) possibly_damaging(0.594) TCGA-44-2668-01 9 86559772 86559772 G A C9orf64 Nonsense_Mutation p.Q244* 0.22 TCGA-44-2668-01 9 87285621 87285621 G A NTRK2 5'UTR 0.13 TCGA-44-2668-01 9 95179363 95179363 G T OMD Missense_Mutation p.L160I 0.23 deleterious(0) probably_damaging(0.997) TCGA-44-2668-01 X 101972152 101972152 G A GPRASP2 Silent p.Q785Q 0.08 TCGA-44-2668-01 X 103267765 103267765 G A H2BFWT Silent p.S156S 0.51 TCGA-44-2668-01 X 107418937 107418937 C A COL4A6 Missense_Mutation p.G927V 0.27 probably_damaging(1) TCGA-44-2668-01 X 107447623 107447623 C G COL4A6 Missense_Mutation p.G237A 0.20 unknown(0) TCGA-44-2668-01 X 110654246 110654246 C - DCX 5'UTR 0.29 TCGA-44-2668-01 X 112024171 112024171 T A AMOT Missense_Mutation p.T806S 0.33 unknown(0) TCGA-44-2668-01 X 132351139 132351139 T C TFDP3 Silent p.P383P 0.32 TCGA-44-2668-01 X 132351141 132351141 G T TFDP3 Missense_Mutation p.P383T 0.32 tolerated(0.05) benign(0) TCGA-44-2668-01 X 135438316 135438316 C A GPR112 Silent p.R2307R 0.26 TCGA-44-2668-01 X 138825775 138825775 T C ATP11C Silent p.G994G 0.38 TCGA-44-2668-01 X 142605176 142605176 C G SPANXN3 Missense_Mutation p.S15T 0.31 tolerated(0.12) probably_damaging(0.95) TCGA-44-2668-01 X 144903924 144903924 G T SLITRK2 5'UTR 0.36 TCGA-44-2668-01 X 147744265 147744265 G T AFF2 Missense_Mutation p.K339N 0.19 deleterious(0) probably_damaging(0.994) TCGA-44-2668-01 X 150840204 150840204 C G PASD1 Missense_Mutation p.L464V 0.27 tolerated(0.06) possibly_damaging(0.451) TCGA-44-2668-01 X 150841089 150841089 C G PASD1 Missense_Mutation p.F624L 0.39 tolerated(0.47) benign(0.006) TCGA-44-2668-01 X 150889897 150889897 A T FATE1 Nonsense_Mutation p.R89* 0.16 TCGA-44-2668-01 X 155234092 155234092 G C IL9R Silent p.L147L 0.08 TCGA-44-2668-01 X 155234093 155234093 G T IL9R Missense_Mutation p.D148Y 0.09 deleterious(0) probably_damaging(0.987) TCGA-44-2668-01 X 2209645 2209645 C A DHRSX Splice_Site p.X96_splice 0.10 TCGA-44-2668-01 X 41064746 41064746 G T USP9X Missense_Mutation p.R1672M 0.19 deleterious(0) probably_damaging(0.996) TCGA-44-2668-01 X 48209509 48209509 G T SSX3 Missense_Mutation p.P127T 0.26 deleterious(0) benign(0.023) TCGA-44-2668-01 X 91133049 91133049 G T PCDH11X Missense_Mutation p.A604S 0.38 tolerated(0.74) possibly_damaging(0.792) TCGA-44-3396-01 10 134755107 134755107 C T TTC40 Silent p.S98S 0.15 TCGA-44-3396-01 10 16996511 16996511 C A CUBN Missense_Mutation p.A1578S 0.23 tolerated(0.25) benign(0.035) TCGA-44-3396-01 10 5138691 5138691 G C AKR1C3 Missense_Mutation p.E58D 0.19 deleterious(0) probably_damaging(0.998) TCGA-44-3396-01 10 55912864 55912864 G T PCDH15 Silent p.R594R 0.18 TCGA-44-3396-01 10 69881674 69881674 A C MYPN Missense_Mutation p.E160A 0.14 deleterious(0) probably_damaging(0.98) TCGA-44-3396-01 10 7614359 7614359 G T ITIH5 Intron 0.27 TCGA-44-3396-01 10 83635621 83635621 C T NRG3 Silent p.I175I 0.05 TCGA-44-3396-01 11 100169956 100169956 T C CNTN5 Silent p.N816N 0.23 TCGA-44-3396-01 11 103023013 103023013 A T DYNC2H1 Missense_Mutation p.Q1032L 0.13 possibly_damaging(0.48) TCGA-44-3396-01 11 113105796 113105796 G A NCAM1 Missense_Mutation p.E628K 0.31 tolerated(0.1) benign(0.183) TCGA-44-3396-01 11 125765210 125765210 T C PUS3 Missense_Mutation p.I285V 0.12 tolerated(0.83) benign(0.017) TCGA-44-3396-01 11 4142838 4142838 C T RRM1 Missense_Mutation p.P294L 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-3396-01 11 49227724 49227724 C T FOLH1 Missense_Mutation p.G40E 0.08 deleterious(0) probably_damaging(0.915) TCGA-44-3396-01 11 51412143 51412143 A T OR4A5 Missense_Mutation p.C85S 0.09 tolerated_low_confidence(0.41) benign(0.006) TCGA-44-3396-01 11 55038191 55038191 C A TRIM48 3'UTR 0.11 TCGA-44-3396-01 11 56258676 56258676 G T OR5M8 Silent p.P57P 0.15 TCGA-44-3396-01 11 57089342 57089342 G A TNKS1BP1 Silent p.L6L 0.23 TCGA-44-3396-01 11 59361700 59361700 A C OSBP Missense_Mutation p.L447R 0.13 deleterious(0) probably_damaging(1) TCGA-44-3396-01 11 59575233 59575233 C T MRPL16 Missense_Mutation p.D71N 0.16 deleterious(0.03) probably_damaging(1) TCGA-44-3396-01 11 66062484 66062484 G A TMEM151A Missense_Mutation p.R256H 0.15 deleterious(0) probably_damaging(0.998) TCGA-44-3396-01 11 6636182 6636182 T C TPP1 Missense_Mutation p.N489S 0.23 deleterious(0) probably_damaging(0.998) TCGA-44-3396-01 11 69465973 69465973 G T CCND1 Missense_Mutation p.A271S 0.06 tolerated(0.85) benign(0.009) TCGA-44-3396-01 11 7079078 7079078 C A NLRP14 Missense_Mutation p.S821Y 0.09 tolerated(0.1) probably_damaging(0.99) TCGA-44-3396-01 11 92533924 92533924 C G FAT3 Missense_Mutation p.T2582S 0.09 benign(0.012) TCGA-44-3396-01 11 94705238 94705238 G C CWC15 Missense_Mutation p.H38D 0.13 deleterious(0) possibly_damaging(0.702) TCGA-44-3396-01 12 120651681 120651681 G A PXN Silent p.L505L 0.14 TCGA-44-3396-01 12 125561082 125561082 A G AACS Missense_Mutation p.K95E 0.09 tolerated(0.27) benign(0.008) TCGA-44-3396-01 12 14706176 14706176 C G PLBD1 Missense_Mutation p.E96Q 0.26 deleterious(0.04) possibly_damaging(0.719) TCGA-44-3396-01 12 40672043 40672043 G T LRRK2 Nonsense_Mutation p.G741* 0.12 TCGA-44-3396-01 12 40702915 40702915 G T LRRK2 Missense_Mutation p.E1399D 0.12 deleterious(0) probably_damaging(0.989) TCGA-44-3396-01 12 43944770 43944770 C A ADAMTS20 Missense_Mutation p.R132L 0.25 deleterious(0.01) possibly_damaging(0.905) TCGA-44-3396-01 12 52774307 52774307 C T KRT84 Missense_Mutation p.D422N 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-44-3396-01 12 58145430 58145430 C A CDK4 Missense_Mutation p.R24L 0.08 deleterious(0) benign(0.232) TCGA-44-3396-01 12 85680674 85680674 G T ALX1 Missense_Mutation p.R192L 0.12 tolerated(0.07) benign(0.03) TCGA-44-3396-01 13 45768147 45768147 C T KCTD4 Missense_Mutation p.E186K 0.08 tolerated(0.09) probably_damaging(0.956) TCGA-44-3396-01 13 50059943 50059943 G T SETDB2 Intron 0.09 TCGA-44-3396-01 13 96624892 96624892 C T UGGT2 Missense_Mutation p.D376N 0.12 deleterious(0.01) benign(0.025) TCGA-44-3396-01 14 39628703 39628703 G C TRAPPC6B Missense_Mutation p.Q45E 0.13 deleterious(0.03) possibly_damaging(0.572) TCGA-44-3396-01 14 51288719 51288719 C A NIN Missense_Mutation p.S19I 0.13 deleterious(0) probably_damaging(0.999) TCGA-44-3396-01 14 58862762 58862762 C G TOMM20L Silent p.L29L 0.25 TCGA-44-3396-01 14 59946062 59946062 C T L3HYPDH Missense_Mutation p.M172I 0.07 tolerated(0.15) benign(0.003) TCGA-44-3396-01 15 45981368 45981368 C G SQRDL Silent p.L416L 0.10 TCGA-44-3396-01 15 72545802 72545802 G A PARP6 Missense_Mutation p.P412L 0.08 deleterious(0.01) possibly_damaging(0.606) TCGA-44-3396-01 15 81440802 81440802 G T C15orf26 Missense_Mutation p.M278I 0.14 tolerated(0.09) benign(0.005) TCGA-44-3396-01 15 84245390 84245390 G T SH3GL3 Missense_Mutation p.R174L 0.10 deleterious(0) probably_damaging(0.998) TCGA-44-3396-01 16 1392790 1392790 T A BAIAP3 Missense_Mutation p.L414Q 0.11 deleterious(0) possibly_damaging(0.883) TCGA-44-3396-01 16 1392793 1392793 G T BAIAP3 Missense_Mutation p.R415L 0.12 tolerated(0.2) benign(0.079) TCGA-44-3396-01 16 28898967 28898968 - G ATP2A1 Frame_Shift_Ins p.S287Lfs*11 0.12 TCGA-44-3396-01 16 30495497 30495497 G A ITGAL Missense_Mutation p.A307T 0.15 tolerated(1) benign(0.008) TCGA-44-3396-01 16 30768316 30768316 C A PHKG2 Silent p.L373L 0.13 TCGA-44-3396-01 16 30972797 30972797 C T SETD1A Silent p.V152V 0.11 TCGA-44-3396-01 16 31341648 31341648 G T ITGAM Missense_Mutation p.C1028F 0.15 deleterious(0) probably_damaging(1) TCGA-44-3396-01 16 57063703 57063703 C T NLRC5 Silent p.L754L 0.18 TCGA-44-3396-01 16 57406455 57406455 G A CX3CL1 5'UTR 0.06 TCGA-44-3396-01 16 69373735 69373735 G A NIP7 Translation_Start_Site p.M1? 0.11 deleterious(0) possibly_damaging(0.768) TCGA-44-3396-01 16 71604652 71604652 C A TAT Missense_Mutation p.R281L 0.13 deleterious(0.02) probably_damaging(0.914) TCGA-44-3396-01 16 74524978 74524978 C A GLG1 Missense_Mutation p.R457L 0.17 tolerated(0.21) benign(0.423) TCGA-44-3396-01 16 74920199 74920199 G A WDR59 Nonsense_Mutation p.R839* 0.17 TCGA-44-3396-01 17 10614344 10614344 A T ADPRM Silent p.P304P 0.17 TCGA-44-3396-01 17 3649126 3649126 A C ITGAE Missense_Mutation p.C751G 0.17 tolerated(0.33) benign(0.055) TCGA-44-3396-01 17 36705386 36705386 G A SRCIN1 Missense_Mutation p.P1008L 0.09 deleterious(0) probably_damaging(0.999) TCGA-44-3396-01 17 37566052 37566052 G A MED1 Nonsense_Mutation p.R808* 0.27 TCGA-44-3396-01 17 37880981 37880982 - GCATACGTGATG ERBB2 In_Frame_Ins p.Y772_A775dup 0.08 TCGA-44-3396-01 17 40093098 40093098 C G TTC25 RNA 0.12 TCGA-44-3396-01 17 40556890 40556890 C T PTRF Missense_Mutation p.E330K 0.04 deleterious(0.05) benign(0.003) TCGA-44-3396-01 17 54912529 54912529 C T DGKE Missense_Mutation p.H125Y 0.12 deleterious(0) probably_damaging(0.98) TCGA-44-3396-01 17 58725387 58725387 C G PPM1D Missense_Mutation p.P321A 0.18 deleterious(0.01) possibly_damaging(0.877) TCGA-44-3396-01 17 61498475 61498475 A G TANC2 Missense_Mutation p.Y1711C 0.10 deleterious_low_confidence(0) possibly_damaging(0.628) TCGA-44-3396-01 17 62492601 62492601 C T POLG2 Silent p.L162L 0.11 TCGA-44-3396-01 17 70732859 70732859 C G SLC39A11 Splice_Site p.X208_splice 0.11 TCGA-44-3396-01 17 71197584 71197584 G A COG1 Missense_Mutation p.D540N 0.12 tolerated(0.14) benign(0.347) TCGA-44-3396-01 17 72527484 72527484 C A CD300LB Missense_Mutation p.W39C 0.09 deleterious(0.03) probably_damaging(0.986) TCGA-44-3396-01 17 7405004 7405004 A G POLR2A Missense_Mutation p.M769V 0.18 probably_damaging(0.999) TCGA-44-3396-01 17 7577081 7577081 T C TP53 Missense_Mutation p.E286G 0.20 deleterious(0) probably_damaging(0.988) TCGA-44-3396-01 18 33282891 33282891 G C GALNT1 Missense_Mutation p.D444H 0.15 deleterious(0.02) probably_damaging(1) TCGA-44-3396-01 18 39647380 39647380 C T PIK3C3 Missense_Mutation p.S851L 0.21 deleterious(0) possibly_damaging(0.573) TCGA-44-3396-01 18 43671709 43671709 C T ATP5A1 Missense_Mutation p.R83H 0.15 deleterious_low_confidence(0.01) benign(0.097) TCGA-44-3396-01 18 56203560 56203560 C G ALPK2 Missense_Mutation p.E1287Q 0.04 tolerated(0.05) possibly_damaging(0.642) TCGA-44-3396-01 18 60028991 60028991 G T TNFRSF11A Missense_Mutation p.G232V 0.16 tolerated(0.91) benign(0.266) TCGA-44-3396-01 18 64221659 64221660 - A CDH19 Frame_Shift_Ins p.S198Ffs*3 0.16 TCGA-44-3396-01 18 645015 645015 G A CLUL1 Missense_Mutation p.E439K 0.12 deleterious(0.02) probably_damaging(0.96) TCGA-44-3396-01 18 9396447 9396447 G A TWSG1 Silent p.E131E 0.06 TCGA-44-3396-01 18 9396492 9396492 G A TWSG1 Silent p.Q146Q 0.05 TCGA-44-3396-01 19 10823252 10823252 G C QTRT1 Missense_Mutation p.C270S 0.07 tolerated(0.21) probably_damaging(0.956) TCGA-44-3396-01 19 12087895 12087895 G T ZNF763 Nonsense_Mutation p.E19* 0.09 TCGA-44-3396-01 19 13035487 13035487 G A FARSA Silent p.L387L 0.18 TCGA-44-3396-01 19 17653042 17653042 C T FAM129C Missense_Mutation p.A454V 0.09 tolerated(0.38) benign(0.034) TCGA-44-3396-01 19 22272062 22272062 C G ZNF257 Missense_Mutation p.Q504E 0.18 tolerated(0.48) benign(0) TCGA-44-3396-01 19 30935025 30935025 G T ZNF536 Missense_Mutation p.G186C 0.16 deleterious(0.02) probably_damaging(1) TCGA-44-3396-01 19 36322010 36322010 C T NPHS1 Silent p.L1142L 0.08 TCGA-44-3396-01 19 43773663 43773663 G A PSG9 5'UTR 0.13 TCGA-44-3396-01 19 45422551 45422551 G C APOC1 3'UTR 0.09 TCGA-44-3396-01 19 45559743 45559743 G A CLASRP Missense_Mutation p.D139N 0.09 tolerated(0.07) possibly_damaging(0.655) TCGA-44-3396-01 19 47569697 47569697 C A ZC3H4 Silent p.P1276P 0.24 TCGA-44-3396-01 19 48342693 48342693 G A CRX Silent p.T123T 0.11 TCGA-44-3396-01 19 52149116 52149116 G T SIGLEC14 Missense_Mutation p.H207N 0.12 deleterious(0) probably_damaging(0.99) TCGA-44-3396-01 19 52618739 52618739 G A ZNF616 Nonsense_Mutation p.Q560* 0.11 TCGA-44-3396-01 19 54696204 54696204 G C TSEN34 Missense_Mutation p.G242A 0.06 deleterious(0) probably_damaging(0.998) TCGA-44-3396-01 19 5844225 5844225 T C FUT3 Missense_Mutation p.Y209C 0.09 deleterious(0) possibly_damaging(0.632) TCGA-44-3396-01 1 113253122 113253122 C G PPM1J Missense_Mutation p.D444H 0.11 tolerated(0.13) possibly_damaging(0.876) TCGA-44-3396-01 1 11740467 11740467 G T MAD2L2 Silent p.R34R 0.09 TCGA-44-3396-01 1 1222560 1222560 C A SCNN1D Nonsense_Mutation p.Y397* 0.13 TCGA-44-3396-01 1 152191367 152191367 G T HRNR Missense_Mutation p.S913Y 0.12 unknown(0) TCGA-44-3396-01 1 154561024 154561024 G C ADAR Intron 0.09 TCGA-44-3396-01 1 154940731 154940731 G A SHC1 Silent p.I251I 0.06 TCGA-44-3396-01 1 1565068 1565068 C T MIB2 Silent p.S986S 0.12 TCGA-44-3396-01 1 16459784 16459784 C T EPHA2 Silent p.L648L 0.08 TCGA-44-3396-01 1 17755624 17755624 T A RCC2 Silent p.R119R 0.10 TCGA-44-3396-01 1 197112595 197112595 T G ASPM Missense_Mutation p.S263R 0.13 tolerated(0.06) benign(0.048) TCGA-44-3396-01 1 204379201 204379201 C G PPP1R15B Missense_Mutation p.D447H 0.06 deleterious(0.01) probably_damaging(0.926) TCGA-44-3396-01 1 205890767 205890767 G C SLC26A9 Missense_Mutation p.T661S 0.21 tolerated(0.83) benign(0.012) TCGA-44-3396-01 1 21014237 21014237 C T KIF17 Missense_Mutation p.E528K 0.14 deleterious_low_confidence(0.04) benign(0.345) TCGA-44-3396-01 1 214819010 214819010 C G CENPF Missense_Mutation p.L2033V 0.05 probably_damaging(0.996) TCGA-44-3396-01 1 22030794 22030794 C G USP48 Missense_Mutation p.D826H 0.07 tolerated(0.14) benign(0.117) TCGA-44-3396-01 1 247694892 247694892 C T OR2C3 Missense_Mutation p.E308K 0.13 tolerated(1) benign(0.002) TCGA-44-3396-01 1 26774059 26774059 G T DHDDS Silent p.L150L 0.15 TCGA-44-3396-01 1 6029307 6029307 G A NPHP4 Missense_Mutation p.H98Y 0.18 tolerated(0.05) possibly_damaging(0.584) TCGA-44-3396-01 1 67452243 67452243 C - MIER1 3'Flank 0.11 TCGA-44-3396-01 1 75038823 75038823 G T C1orf173 Missense_Mutation p.D857E 0.13 tolerated(0.4) benign(0.05) TCGA-44-3396-01 1 76779523 76779523 G A ST6GALNAC3 Missense_Mutation p.A18T 0.13 benign(0.007) TCGA-44-3396-01 1 84383358 84383358 C A TTLL7 Missense_Mutation p.D506Y 0.12 deleterious(0) probably_damaging(0.985) TCGA-44-3396-01 1 89846103 89846103 C T GBP6 Nonsense_Mutation p.Q262* 0.20 TCGA-44-3396-01 20 1961296 1961296 C T PDYN Missense_Mutation p.M146I 0.08 tolerated(0.5) benign(0.001) TCGA-44-3396-01 20 33451278 33451278 G A GGT7 Silent p.D81D 0.16 TCGA-44-3396-01 20 34575410 34575410 C G CNBD2 Missense_Mutation p.I270M 0.05 deleterious(0.03) possibly_damaging(0.883) TCGA-44-3396-01 20 36856578 36856578 C A KIAA1755 Missense_Mutation p.G646C 0.10 tolerated(0.11) probably_damaging(0.94) TCGA-44-3396-01 20 39728776 39728776 C G TOP1 Missense_Mutation p.N352K 0.15 deleterious(0) probably_damaging(0.993) TCGA-44-3396-01 20 45725774 45725774 A T EYA2 Missense_Mutation p.L285F 0.10 deleterious(0) probably_damaging(1) TCGA-44-3396-01 20 60584215 60584215 C T TAF4 Missense_Mutation p.V593M 0.16 probably_damaging(0.997) TCGA-44-3396-01 20 7915177 7915177 G T HAO1 Silent p.A81A 0.09 TCGA-44-3396-01 21 45987864 45987864 C T TSPEAR Silent p.A36A 0.10 TCGA-44-3396-01 22 21213381 21213381 G T SNAP29 5'UTR 0.12 TCGA-44-3396-01 22 26422991 26422991 T A MYO18B Missense_Mutation p.C2351S 0.07 tolerated(0.12) probably_damaging(0.947) TCGA-44-3396-01 22 27003956 27003956 C T CRYBB1 Missense_Mutation p.R110H 0.06 tolerated(0.1) possibly_damaging(0.862) TCGA-44-3396-01 22 29191414 29191414 G A XBP1 3'UTR 0.29 TCGA-44-3396-01 22 39530045 39530045 C T CBX7 Missense_Mutation p.D203N 0.07 tolerated(0.11) benign(0.409) TCGA-44-3396-01 2 106694260 106694260 C A C2orf40 Silent p.R109R 0.13 TCGA-44-3396-01 2 113763598 113763598 C T IL36A Missense_Mutation p.H20Y 0.08 deleterious(0.01) possibly_damaging(0.733) TCGA-44-3396-01 2 122488554 122488554 C T NIFK Missense_Mutation p.R160Q 0.12 tolerated(0.29) benign(0.009) TCGA-44-3396-01 2 135621051 135621051 G A ACMSD Silent p.V112V 0.10 TCGA-44-3396-01 2 138373849 138373849 G A THSD7B Silent p.L1179L 0.13 TCGA-44-3396-01 2 139428724 139428724 C A NXPH2 Missense_Mutation p.R188L 0.14 deleterious(0) possibly_damaging(0.902) TCGA-44-3396-01 2 160836348 160836348 C G PLA2R1 Missense_Mutation p.R754T 0.20 deleterious(0.01) possibly_damaging(0.574) TCGA-44-3396-01 2 179479392 179479392 G T TTN Silent p.T16283T 0.09 TCGA-44-3396-01 2 196664163 196664163 T C DNAH7 Missense_Mutation p.R3404G 0.08 deleterious(0.04) benign(0.001) TCGA-44-3396-01 2 210642136 210642136 G C UNC80 Missense_Mutation p.Q151H 0.11 probably_damaging(0.984) TCGA-44-3396-01 2 215274887 215274887 G T SPAG16 Missense_Mutation p.G582C 0.09 deleterious(0.04) benign(0.036) TCGA-44-3396-01 2 224847476 224847476 C G SERPINE2 Missense_Mutation p.D315H 0.10 deleterious(0) probably_damaging(1) TCGA-44-3396-01 2 227924124 227924124 C T COL4A4 Missense_Mutation p.E794K 0.09 benign(0.044) TCGA-44-3396-01 2 234358641 234358641 G C DGKD Missense_Mutation p.Q634H 0.16 deleterious(0.01) benign(0.078) TCGA-44-3396-01 2 49381586 49381586 C T FSHR 5'UTR 0.11 TCGA-44-3396-01 2 63666936 63666936 C A WDPCP Missense_Mutation p.D152Y 0.07 deleterious(0) probably_damaging(1) TCGA-44-3396-01 2 74690085 74690085 T G MOGS Silent p.V277V 0.13 TCGA-44-3396-01 2 74783669 74783669 C - DOK1 Frame_Shift_Del p.P293Qfs*8 0.11 TCGA-44-3396-01 2 85576586 85576586 C T RETSAT Silent p.V306V 0.13 TCGA-44-3396-01 2 8931289 8931289 C - KIDINS220 Frame_Shift_Del p.A448Qfs*32 0.11 TCGA-44-3396-01 3 113375010 113375010 G C KIAA2018 Nonsense_Mutation p.S1840* 0.07 TCGA-44-3396-01 3 124141758 124141758 C T KALRN Missense_Mutation p.A879V 0.11 deleterious(0.01) benign(0.139) TCGA-44-3396-01 3 148458798 148458798 A T AGTR1 5'UTR 0.09 TCGA-44-3396-01 3 150883660 150883660 C T MED12L Missense_Mutation p.T462M 0.12 deleterious(0) possibly_damaging(0.782) TCGA-44-3396-01 3 164725726 164725726 C T SI Missense_Mutation p.E1414K 0.09 tolerated(0.86) benign(0.007) TCGA-44-3396-01 3 170588039 170588039 G A RPL22L1 5'UTR 0.20 TCGA-44-3396-01 3 188426068 188426068 G T LPP Missense_Mutation p.G376V 0.12 tolerated(0.33) benign(0.005) TCGA-44-3396-01 3 42777198 42777198 C T CCDC13 Splice_Site p.X457_splice 0.08 TCGA-44-3396-01 3 46399605 46399605 G A CCR2 Missense_Mutation p.R196Q 0.11 tolerated(0.49) benign(0.003) TCGA-44-3396-01 3 47456482 47456482 C A SCAP Silent p.G1047G 0.12 TCGA-44-3396-01 3 47456639 47456639 C G SCAP Missense_Mutation p.D1030H 0.09 deleterious(0) probably_damaging(0.926) TCGA-44-3396-01 3 48677227 48677227 G A CELSR3 Missense_Mutation p.S3264L 0.10 deleterious_low_confidence(0) benign(0.421) TCGA-44-3396-01 3 49042348 49042348 G T P4HTM Silent p.L314L 0.10 TCGA-44-3396-01 3 49042350 49042350 A C P4HTM Missense_Mutation p.Q315P 0.10 deleterious(0) benign(0.348) TCGA-44-3396-01 3 49161339 49161339 G A LAMB2 Missense_Mutation p.R1207C 0.14 deleterious(0) possibly_damaging(0.889) TCGA-44-3396-01 3 49724892 49724892 G A MST1 Silent p.I125I 0.10 TCGA-44-3396-01 3 58080588 58080588 G T FLNB Silent p.V271V 0.11 TCGA-44-3396-01 4 109088908 109088908 C T LEF1 Missense_Mutation p.G6R 0.11 tolerated(0.08) possibly_damaging(0.821) TCGA-44-3396-01 4 153874673 153874673 G A FHDC1 Missense_Mutation p.R174Q 0.09 deleterious(0) probably_damaging(1) TCGA-44-3396-01 4 24538793 24538793 G - DHX15 Frame_Shift_Del p.P597Hfs*19 0.13 TCGA-44-3396-01 4 6055780 6055780 G C JAKMIP1 Silent p.L601L 0.11 TCGA-44-3396-01 4 69682206 69682206 G T UGT2B10 Nonsense_Mutation p.E157* 0.09 TCGA-44-3396-01 4 7056332 7056332 G C TADA2B Missense_Mutation p.D272H 0.17 deleterious(0) benign(0.012) TCGA-44-3396-01 4 73957758 73957758 G A ANKRD17 Missense_Mutation p.H1863Y 0.06 benign(0.036) TCGA-44-3396-01 4 83984321 83984321 G C COPS4 Missense_Mutation p.D270H 0.12 deleterious(0) probably_damaging(0.964) TCGA-44-3396-01 4 90034222 90034222 G A TIGD2 Missense_Mutation p.V33M 0.13 tolerated(0.1) possibly_damaging(0.833) TCGA-44-3396-01 5 131607089 131607089 C A PDLIM4 Silent p.P200P 0.12 TCGA-44-3396-01 5 140580730 140580730 C T PCDHB11 Silent p.R461R 0.10 TCGA-44-3396-01 5 140865098 140865098 G C PCDHGC4 Missense_Mutation p.E120Q 0.11 deleterious(0.01) possibly_damaging(0.642) TCGA-44-3396-01 5 17275932 17275932 G A BASP1 Missense_Mutation p.A203T 0.12 deleterious(0.02) probably_damaging(0.989) TCGA-44-3396-01 5 178506452 178506452 G A ZNF354C Missense_Mutation p.R340K 0.05 tolerated(0.31) possibly_damaging(0.72) TCGA-44-3396-01 5 31515172 31515172 C T DROSHA Missense_Mutation p.E405K 0.07 tolerated(0.1) benign(0.078) TCGA-44-3396-01 5 36985803 36985803 C T NIPBL Nonsense_Mutation p.R841* 0.07 TCGA-44-3396-01 5 53467697 53467697 C G ARL15 Missense_Mutation p.C37S 0.14 deleterious(0) probably_damaging(0.992) TCGA-44-3396-01 5 63509899 63509899 A T RNF180 Missense_Mutation p.H249L 0.13 tolerated(0.27) benign(0.005) TCGA-44-3396-01 5 64956651 64956651 G C TRAPPC13 Missense_Mutation p.G275A 0.06 deleterious(0) probably_damaging(0.993) TCGA-44-3396-01 5 73048996 73048996 G A ARHGEF28 Silent p.E148E 0.11 TCGA-44-3396-01 6 100838105 100838105 A G SIM1 3'UTR 0.27 TCGA-44-3396-01 6 100957385 100957385 C G ASCC3 Missense_Mutation p.M2162I 0.05 tolerated(0.37) benign(0.026) TCGA-44-3396-01 6 121624836 121624836 G A TBC1D32 Missense_Mutation p.S336L 0.09 deleterious(0.01) benign(0.025) TCGA-44-3396-01 6 143095798 143095798 C G HIVEP2 Missense_Mutation p.W26C 0.06 deleterious(0) probably_damaging(0.999) TCGA-44-3396-01 6 161470184 161470184 A T MAP3K4 Missense_Mutation p.I294F 0.10 deleterious(0) probably_damaging(0.998) TCGA-44-3396-01 6 24843425 24843425 C G FAM65B Missense_Mutation p.E529Q 0.15 tolerated(0.24) benign(0.056) TCGA-44-3396-01 6 31611664 31611664 C T BAG6 Intron 0.10 TCGA-44-3396-01 6 39835326 39835326 C G DAAM2 Missense_Mutation p.L157V 0.06 deleterious(0.04) probably_damaging(0.994) TCGA-44-3396-01 6 56371470 56371470 C G DST Missense_Mutation p.D3830H 0.11 probably_damaging(1) TCGA-44-3396-01 6 74063075 74063075 T C DPPA5 Missense_Mutation p.N107D 0.04 tolerated(0.09) benign(0.116) TCGA-44-3396-01 6 80629227 80629227 C T ELOVL4 Silent p.V193V 0.10 TCGA-44-3396-01 6 88854698 88854698 C G CNR1 Missense_Mutation p.G99A 0.06 tolerated(0.18) benign(0.16) TCGA-44-3396-01 7 112579651 112579651 C T C7orf60 Missense_Mutation p.R52Q 0.06 tolerated(0.3) benign(0.014) TCGA-44-3396-01 7 11485907 11485907 G A THSD7A Missense_Mutation p.P949S 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-44-3396-01 7 117876197 117876197 C G ANKRD7 Missense_Mutation p.Q191E 0.22 tolerated(0.2) possibly_damaging(0.528) TCGA-44-3396-01 7 129945750 129945750 C A CPA4 Missense_Mutation p.T194K 0.15 deleterious(0.05) possibly_damaging(0.883) TCGA-44-3396-01 7 151884816 151884816 A C KMT2C Missense_Mutation p.S1593A 0.12 benign(0.012) TCGA-44-3396-01 7 27187160 27187160 G T HOXA6 Missense_Mutation p.A70E 0.29 deleterious(0.04) probably_damaging(0.983) TCGA-44-3396-01 7 40723661 40723661 G C SUGCT Missense_Mutation p.V373L 0.11 tolerated_low_confidence(0.49) benign(0.001) TCGA-44-3396-01 7 41729294 41729294 T C INHBA Missense_Mutation p.K412R 0.29 deleterious(0) probably_damaging(0.999) TCGA-44-3396-01 7 49842429 49842430 - A VWC2 Frame_Shift_Ins p.N275Kfs*21 0.21 TCGA-44-3396-01 7 83640502 83640502 G A SEMA3A Silent p.L308L 0.11 TCGA-44-3396-01 7 91660865 91660865 G A AKAP9 Missense_Mutation p.V1429I 0.12 benign(0.02) TCGA-44-3396-01 7 91700233 91700233 A G AKAP9 Silent p.K2174K 0.23 TCGA-44-3396-01 8 100990155 100990155 T G RGS22 Missense_Mutation p.K1170T 0.06 tolerated(0.17) benign(0.282) TCGA-44-3396-01 8 10468793 10468793 C T RP1L1 Missense_Mutation p.E939K 0.12 benign(0.134) TCGA-44-3396-01 8 125074159 125074159 G - FER1L6 Frame_Shift_Del p.R1073Gfs*13 0.11 TCGA-44-3396-01 8 125080028 125080028 G A FER1L6 Silent p.K1233K 0.11 TCGA-44-3396-01 8 144887128 144887128 C A SCRIB Silent p.L909L 0.35 TCGA-44-3396-01 8 24772249 24772249 G A NEFM Missense_Mutation p.E315K 0.07 deleterious(0) unknown(0) TCGA-44-3396-01 8 95508682 95508682 G A KIAA1429 Silent p.L1419L 0.08 TCGA-44-3396-01 9 112705636 112705636 G C PALM2 Missense_Mutation p.E389D 0.04 tolerated(0.18) possibly_damaging(0.817) TCGA-44-3396-01 9 134371229 134371229 C G PRRC2B Missense_Mutation p.R2220G 0.05 deleterious(0.01) benign(0.317) TCGA-44-3396-01 9 14150265 14150265 C A NFIB Splice_Site p.X229_splice 0.07 TCGA-44-3396-01 9 18574179 18574179 T A ADAMTSL1 Missense_Mutation p.L130Q 0.04 deleterious(0) probably_damaging(0.987) TCGA-44-3396-01 9 34514476 34514476 C G DNAI1 Missense_Mutation p.H552D 0.06 deleterious(0.04) possibly_damaging(0.775) TCGA-44-3396-01 9 5892506 5892506 G T MLANA Missense_Mutation p.G11V 0.13 deleterious(0.03) benign(0.104) TCGA-44-3396-01 9 8518128 8518128 C G PTPRD Silent p.P421P 0.10 TCGA-44-3396-01 9 90388437 90388437 G A CTSL3P RNA 0.10 TCGA-44-3396-01 9 95258594 95258594 G C ECM2 3'UTR 0.06 TCGA-44-3396-01 9 95258704 95258704 G T ECM2 Missense_Mutation p.L665I 0.08 deleterious(0.02) possibly_damaging(0.515) TCGA-44-3396-01 9 95258713 95258713 G C ECM2 Missense_Mutation p.L662V 0.09 deleterious(0.01) possibly_damaging(0.893) TCGA-44-3396-01 X 103349436 103349436 G A SLC25A53 Missense_Mutation p.R169W 0.12 deleterious(0) probably_damaging(0.999) TCGA-44-3396-01 X 106466059 106466059 C T PIH1D3 Silent p.C139C 0.09 TCGA-44-3396-01 X 117960105 117960105 A G ZCCHC12 Missense_Mutation p.R300G 0.11 tolerated(0.07) benign(0.009) TCGA-44-3396-01 X 122537344 122537344 C G GRIA3 Missense_Mutation p.R423G 0.11 deleterious(0) benign(0.079) TCGA-44-3396-01 X 12904699 12904699 G T TLR7 Missense_Mutation p.A358S 0.14 tolerated(0.77) benign(0.004) TCGA-44-3396-01 X 139865753 139865753 C T CDR1 Nonsense_Mutation p.W260* 0.11 TCGA-44-3396-01 X 149839952 149839952 G A MTM1 Missense_Mutation p.E566K 0.19 deleterious(0.01) benign(0.033) TCGA-44-3396-01 X 150349062 150349062 C A GPR50 Missense_Mutation p.A336D 0.12 deleterious(0) benign(0.391) TCGA-44-3396-01 X 150349063 150349063 C A GPR50 Silent p.A336A 0.12 TCGA-44-3396-01 X 153043799 153043799 G A SRPK3 5'Flank 0.09 TCGA-44-3396-01 X 17762333 17762333 C G SCML1 Missense_Mutation p.I9M 0.13 tolerated(0.1) possibly_damaging(0.831) TCGA-44-3396-01 X 47308566 47308566 G T ZNF41 Missense_Mutation p.N201K 0.08 tolerated(0.52) benign(0.005) TCGA-44-3396-01 X 47835779 47835779 G T ZNF182 Silent p.P569P 0.13 TCGA-44-3396-01 X 51239057 51239057 C A NUDT11 Silent p.L80L 0.09 TCGA-44-3396-01 X 54029107 54029107 G A PHF8 Missense_Mutation p.H355Y 0.12 tolerated(0.35) benign(0.409) TCGA-44-3396-01 X 54161289 54161289 C T FAM120C Missense_Mutation p.D531N 0.07 deleterious(0.02) possibly_damaging(0.757) TCGA-44-3396-01 X 77373668 77373668 G C PGK1 Splice_Site p.X214_splice 0.11 TCGA-44-3396-01 X 86071099 86071099 C A DACH2 Missense_Mutation p.Q583K 0.13 deleterious(0.03) possibly_damaging(0.546) TCGA-44-3396-01 X 91675527 91675527 C T PCDH11X Intron 0.10 TCGA-44-3398-01 10 121432086 121432086 G T BAG3 Missense_Mutation p.R276L 0.15 deleterious(0) probably_damaging(0.949) TCGA-44-3398-01 10 127708376 127708376 G T ADAM12 Missense_Mutation p.P853T 0.14 deleterious(0) possibly_damaging(0.901) TCGA-44-3398-01 10 31134418 31134418 C A ZNF438 Missense_Mutation p.Q653H 0.08 deleterious(0) probably_damaging(0.999) TCGA-44-3398-01 10 89624246 89624247 - G PTEN Frame_Shift_Ins p.I8Dfs*3 0.18 TCGA-44-3398-01 11 104872881 104872881 G A CASP5 Silent p.I210I 0.10 TCGA-44-3398-01 11 108381132 108381132 T A EXPH5 Missense_Mutation p.N1701I 0.10 deleterious(0.02) benign(0.114) TCGA-44-3398-01 11 118960719 118960719 G A HMBS Missense_Mutation p.A122T 0.09 deleterious(0) probably_damaging(1) TCGA-44-3398-01 11 128680783 128680783 C T FLI1 Missense_Mutation p.S420L 0.06 deleterious(0) benign(0.089) TCGA-44-3398-01 11 30432971 30432971 A T MPPED2 3'UTR 0.10 TCGA-44-3398-01 11 44626629 44626629 G C CD82 Missense_Mutation p.R53T 0.06 deleterious(0.01) benign(0.009) TCGA-44-3398-01 11 47510459 47510459 G C CELF1 Missense_Mutation p.F63L 0.08 tolerated(0.09) possibly_damaging(0.458) TCGA-44-3398-01 11 55321922 55321922 C A OR4C15 Missense_Mutation p.A47D 0.08 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-44-3398-01 11 55595148 55595148 G T OR5L2 Missense_Mutation p.G152W 0.12 deleterious(0) probably_damaging(0.988) TCGA-44-3398-01 11 55607016 55607016 A G OR5D16 Silent p.V263V 0.12 TCGA-44-3398-01 11 56310155 56310155 G C OR5M11 Silent p.V193V 0.10 TCGA-44-3398-01 11 58207039 58207039 C A OR5B12 Missense_Mutation p.V196F 0.10 deleterious_low_confidence(0.02) benign(0.262) TCGA-44-3398-01 11 60643148 60643148 C A ZP1 3'UTR 0.11 TCGA-44-3398-01 11 6260417 6260417 C A CNGA4 5'UTR 0.08 TCGA-44-3398-01 11 6290956 6290956 G C CCKBR Missense_Mutation p.G70A 0.07 tolerated(0.34) benign(0.004) TCGA-44-3398-01 11 66834240 66834240 G T RHOD Silent p.L84L 0.10 TCGA-44-3398-01 11 7335004 7335004 G T SYT9 Silent p.P292P 0.11 TCGA-44-3398-01 11 74977166 74977166 G A ARRB1 3'UTR 0.07 TCGA-44-3398-01 11 85436910 85436910 C A SYTL2 Missense_Mutation p.S197I 0.09 deleterious(0) benign(0.087) TCGA-44-3398-01 11 89424161 89424161 G T FOLH1B RNA 0.07 TCGA-44-3398-01 11 94209498 94209498 C A MRE11A Missense_Mutation p.D206Y 0.08 tolerated(0.06) probably_damaging(0.917) TCGA-44-3398-01 12 12038881 12038881 G A ETV6 Missense_Mutation p.E392K 0.06 deleterious(0.01) probably_damaging(0.985) TCGA-44-3398-01 12 1984472 1984472 G T CACNA2D4 Missense_Mutation p.P584H 0.09 deleterious(0) probably_damaging(0.996) TCGA-44-3398-01 12 22408291 22408291 G A ST8SIA1 Silent p.C138C 0.10 TCGA-44-3398-01 12 22408292 22408292 C A ST8SIA1 Missense_Mutation p.C138F 0.10 deleterious(0) probably_damaging(0.99) TCGA-44-3398-01 12 2968862 2968862 G T FOXM1 Intron 0.24 TCGA-44-3398-01 12 5021622 5021622 C T KCNA1 Missense_Mutation p.P360S 0.10 deleterious(0) probably_damaging(0.999) TCGA-44-3398-01 12 70747665 70747665 C T CNOT2 Silent p.F531F 0.06 TCGA-44-3398-01 12 85450232 85450232 A T LRRIQ1 Missense_Mutation p.Q554L 0.21 deleterious(0.01) possibly_damaging(0.776) TCGA-44-3398-01 13 38154004 38154004 G C POSTN Missense_Mutation p.L552V 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-44-3398-01 13 46539475 46539475 C T ZC3H13 Missense_Mutation p.E1472K 0.05 unknown(0) TCGA-44-3398-01 13 46559778 46559778 C G ZC3H13 Silent p.R458R 0.06 TCGA-44-3398-01 14 106320571 106320571 G C IGHM Missense_Mutation p.C413W 0.18 deleterious(0) probably_damaging(1) TCGA-44-3398-01 14 106967217 106967217 T C IGHV1-46 Silent p.G61G 0.09 TCGA-44-3398-01 14 20926713 20926713 C T TMEM55B 3'UTR 0.11 TCGA-44-3398-01 14 21811336 21811336 T C RPGRIP1 Missense_Mutation p.S1161P 0.07 deleterious(0) probably_damaging(0.999) TCGA-44-3398-01 14 23424312 23424312 G A HAUS4 Nonsense_Mutation p.Q18* 0.05 TCGA-44-3398-01 14 24586142 24586142 G T DCAF11 Missense_Mutation p.V58L 0.10 tolerated(0.4) benign(0.049) TCGA-44-3398-01 14 24682634 24682634 G C CHMP4A Silent p.L47L 0.11 TCGA-44-3398-01 14 35739605 35739605 A T KIAA0391 Splice_Site p.X475_splice 0.10 TCGA-44-3398-01 14 60574777 60574777 G C PCNXL4 Intron 0.08 TCGA-44-3398-01 14 64574293 64574293 G C SYNE2 Missense_Mutation p.E4193Q 0.03 benign(0.021) TCGA-44-3398-01 14 64686021 64686021 G T SYNE2 Missense_Mutation p.A6585S 0.10 benign(0.004) TCGA-44-3398-01 14 95111393 95111393 G A SERPINA13P RNA 0.20 TCGA-44-3398-01 15 102312093 102312093 C A RN7SL209P 3'Flank 0.13 TCGA-44-3398-01 15 43827053 43827053 T A PPIP5K1 Missense_Mutation p.E1374V 0.04 deleterious_low_confidence(0.03) benign(0.003) TCGA-44-3398-01 15 43827054 43827054 C G PPIP5K1 Missense_Mutation p.E1374Q 0.04 deleterious_low_confidence(0) benign(0.119) TCGA-44-3398-01 16 16215882 16215882 C T ABCC1 Silent p.S1147S 0.05 TCGA-44-3398-01 16 21061251 21061251 C T DNAH3 Missense_Mutation p.A1443T 0.11 deleterious(0.01) probably_damaging(0.967) TCGA-44-3398-01 16 23382700 23382700 C G SCNN1B Missense_Mutation p.H321D 0.11 deleterious(0) probably_damaging(1) TCGA-44-3398-01 16 23641517 23641517 C A PALB2 Missense_Mutation p.C653F 0.10 tolerated(0.62) benign(0.052) TCGA-44-3398-01 16 50642215 50642215 G A NKD1 Missense_Mutation p.G68D 0.10 tolerated(0.12) benign(0.037) TCGA-44-3398-01 16 67860420 67860420 C G TSNAXIP1 Silent p.V398V 0.06 TCGA-44-3398-01 16 71318373 71318373 C G CMTR2 Missense_Mutation p.G484A 0.11 tolerated(0.06) possibly_damaging(0.459) TCGA-44-3398-01 17 10209847 10209847 G T MYH13 Missense_Mutation p.H1799N 0.11 tolerated(0.22) benign(0.378) TCGA-44-3398-01 17 10432095 10432095 A G MYH2 Missense_Mutation p.V1219A 0.13 deleterious(0.03) possibly_damaging(0.488) TCGA-44-3398-01 17 18881012 18881012 C T FAM83G Missense_Mutation p.R656Q 0.11 deleterious(0.01) possibly_damaging(0.542) TCGA-44-3398-01 17 26960091 26960091 T G KIAA0100 Missense_Mutation p.H1225P 0.11 deleterious(0) probably_damaging(0.992) TCGA-44-3398-01 17 3436156 3436156 G T TRPV3 Missense_Mutation p.T287K 0.13 deleterious(0) benign(0.338) TCGA-44-3398-01 17 34937810 34937810 G T GGNBP2 Nonsense_Mutation p.E353* 0.06 TCGA-44-3398-01 17 38296830 38296830 C T CASC3 Missense_Mutation p.S10L 0.12 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-44-3398-01 17 4621908 4621908 G A ARRB2 Silent p.V257V 0.06 TCGA-44-3398-01 17 72915997 72915997 G T USH1G Missense_Mutation p.L312M 0.06 deleterious(0) probably_damaging(0.998) TCGA-44-3398-01 17 7474715 7474715 C T SENP3 Nonsense_Mutation p.Q547* 0.06 TCGA-44-3398-01 18 2566837 2566837 T C METTL4 Missense_Mutation p.I127V 0.09 tolerated(0.71) benign(0.001) TCGA-44-3398-01 18 43249393 43249394 - C SLC14A2 Frame_Shift_Ins p.T722Hfs*38 0.16 TCGA-44-3398-01 18 47810363 47810363 C G CXXC1 Missense_Mutation p.Q442H 0.04 deleterious(0.04) probably_damaging(0.986) TCGA-44-3398-01 18 55996303 55996303 A T NEDD4L Missense_Mutation p.R253W 0.08 tolerated(0.06) possibly_damaging(0.765) TCGA-44-3398-01 18 60646292 60646292 C T PHLPP1 Silent p.G1594G 0.23 TCGA-44-3398-01 18 72775242 72775242 G T ZNF407 Missense_Mutation p.R1855S 0.12 deleterious(0.04) possibly_damaging(0.476) TCGA-44-3398-01 19 14153285 14153285 C A IL27RA Silent p.T185T 0.07 TCGA-44-3398-01 19 15904894 15904894 C T OR10H5 Silent p.F12F 0.04 TCGA-44-3398-01 19 19760426 19760427 AT - ATP13A1 Frame_Shift_Del p.M861Vfs*15 0.22 TCGA-44-3398-01 19 31768037 31768037 C T TSHZ3 Missense_Mutation p.A888T 0.11 deleterious(0.01) benign(0.124) TCGA-44-3398-01 19 38976304 38976304 G A RYR1 Missense_Mutation p.R1670H 0.16 possibly_damaging(0.54) TCGA-44-3398-01 19 39019689 39019689 G C RYR1 Silent p.T3711T 0.06 TCGA-44-3398-01 19 43699270 43699270 G C PSG4 Missense_Mutation p.P289A 0.08 tolerated(0.06) possibly_damaging(0.822) TCGA-44-3398-01 19 43708039 43708039 G T PSG4 Missense_Mutation p.H143Q 0.15 deleterious(0.02) benign(0.181) TCGA-44-3398-01 19 43708174 43708174 T A PSG4 Missense_Mutation p.R98S 0.07 deleterious(0) probably_damaging(0.999) TCGA-44-3398-01 19 4558145 4558145 G A SEMA6B Silent p.P46P 0.10 TCGA-44-3398-01 19 46393833 46393833 C A MYPOP 3'UTR 0.12 TCGA-44-3398-01 19 46915990 46915990 G C CCDC8 Silent p.V26V 0.05 TCGA-44-3398-01 19 47870329 47870329 G T DHX34 Missense_Mutation p.R562L 0.13 deleterious(0) possibly_damaging(0.699) TCGA-44-3398-01 19 50314903 50314903 C T FUZ Silent p.L124L 0.05 TCGA-44-3398-01 19 51728706 51728706 C A CD33 Missense_Mutation p.F90L 0.08 deleterious(0) probably_damaging(0.998) TCGA-44-3398-01 19 55086420 55086420 C T LILRA2 Missense_Mutation p.S192L 0.09 deleterious(0.01) benign(0.045) TCGA-44-3398-01 19 55481503 55481503 G A NLRP2 Silent p.Q40Q 0.06 TCGA-44-3398-01 19 56382295 56382295 G T NLRP4 Silent p.L819L 0.12 TCGA-44-3398-01 19 56952614 56952614 C G ZNF667 Missense_Mutation p.E584Q 0.05 deleterious(0.04) benign(0.185) TCGA-44-3398-01 19 58578646 58578646 C A ZNF135 Missense_Mutation p.T289N 0.12 deleterious(0.01) probably_damaging(0.956) TCGA-44-3398-01 19 58858351 58858351 C G A1BG 3'UTR 0.04 TCGA-44-3398-01 19 6928183 6928183 C T EMR1 Silent p.F750F 0.07 TCGA-44-3398-01 19 8971676 8971676 C T MUC16 Missense_Mutation p.E14306K 0.15 possibly_damaging(0.598) TCGA-44-3398-01 19 9076466 9076466 T C MUC16 Silent p.E3660E 0.06 TCGA-44-3398-01 1 107937895 107937895 G A NTNG1 Missense_Mutation p.R336Q 0.03 tolerated(0.1) benign(0.097) TCGA-44-3398-01 1 109358790 109358790 G C AKNAD1 3'UTR 0.03 TCGA-44-3398-01 1 11184600 11184600 T C MTOR Missense_Mutation p.N2206S 0.11 deleterious(0) probably_damaging(0.989) TCGA-44-3398-01 1 11291433 11291433 T C MTOR Missense_Mutation p.Y858C 0.12 deleterious(0) probably_damaging(0.999) TCGA-44-3398-01 1 114969875 114969875 A G TRIM33 Silent p.D448D 0.06 TCGA-44-3398-01 1 116311165 116311165 G C CASQ2 5'UTR 0.13 TCGA-44-3398-01 1 14105012 14105012 C A PRDM2 Missense_Mutation p.T241N 0.07 benign(0.413) TCGA-44-3398-01 1 150599975 150599975 A C ENSA Missense_Mutation p.S51A 0.10 deleterious(0.05) probably_damaging(0.978) TCGA-44-3398-01 1 1560947 1560947 G T MIB2 Missense_Mutation p.V411L 0.14 deleterious(0) probably_damaging(0.954) TCGA-44-3398-01 1 157062651 157062654 CAGC AGG ETV3L Frame_Shift_Del p.G293Dfs*20 0.11 TCGA-44-3398-01 1 161163558 161163558 C T ADAMTS4 Missense_Mutation p.C536Y 0.08 deleterious(0) probably_damaging(1) TCGA-44-3398-01 1 161969907 161969907 C T OLFML2B Silent p.E315E 0.08 TCGA-44-3398-01 1 166944553 166944553 G A ILDR2 5'UTR 0.09 TCGA-44-3398-01 1 169388313 169388313 C G CCDC181 Missense_Mutation p.E385Q 0.06 tolerated(0.06) probably_damaging(0.913) TCGA-44-3398-01 1 17345264 17345264 T G SDHB 3'UTR 0.14 TCGA-44-3398-01 1 17345334 17345334 C G SDHB 3'UTR 0.09 TCGA-44-3398-01 1 173822600 173822600 C G DARS2 Silent p.L486L 0.11 TCGA-44-3398-01 1 174781003 174781003 G A RABGAP1L Missense_Mutation p.E749K 0.07 deleterious(0) probably_damaging(0.999) TCGA-44-3398-01 1 175116129 175116129 C G TNN Missense_Mutation p.I1274M 0.05 deleterious(0) probably_damaging(0.941) TCGA-44-3398-01 1 175372526 175372526 C A TNR Silent p.R242R 0.10 TCGA-44-3398-01 1 177250215 177250215 T A BRINP2 Missense_Mutation p.W635R 0.14 tolerated(0.06) probably_damaging(0.997) TCGA-44-3398-01 1 17942588 17942588 G C ARHGEF10L Splice_Site p.X243_splice 0.03 TCGA-44-3398-01 1 205065903 205065903 C A RBBP5 Nonsense_Mutation p.E435* 0.10 TCGA-44-3398-01 1 21268737 21268737 C A EIF4G3 Missense_Mutation p.G254C 0.10 tolerated_low_confidence(0.23) possibly_damaging(0.841) TCGA-44-3398-01 1 214788297 214788297 A G CENPF Silent p.S95S 0.10 TCGA-44-3398-01 1 222843271 222843271 A T AIDA Silent p.L295L 0.07 TCGA-44-3398-01 1 34128604 34128604 C G CSMD2 Missense_Mutation p.E1341Q 0.07 deleterious(0.01) probably_damaging(0.972) TCGA-44-3398-01 1 46871349 46871349 C T FAAH Missense_Mutation p.A223V 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-44-3398-01 1 86890064 86890064 T A CLCA2 Missense_Mutation p.I45N 0.09 deleterious(0) possibly_damaging(0.815) TCGA-44-3398-01 20 3102775 3102775 C A UBOX5 Silent p.V170V 0.10 TCGA-44-3398-01 20 31607499 31607499 G T BPIFB2 Silent p.V341V 0.17 TCGA-44-3398-01 20 36869715 36869715 C A KIAA1755 Missense_Mutation p.G273V 0.08 deleterious(0) probably_damaging(1) TCGA-44-3398-01 20 40053841 40053841 G A CHD6 Silent p.L1441L 0.07 TCGA-44-3398-01 20 60587990 60587990 C A TAF4 Missense_Mutation p.A508S 0.11 benign(0.041) TCGA-44-3398-01 20 62737699 62737699 C A NPBWR2 Silent p.G162G 0.12 TCGA-44-3398-01 21 31797938 31797938 C A KRTAP13-3 Missense_Mutation p.G98V 0.14 tolerated(0.06) possibly_damaging(0.58) TCGA-44-3398-01 22 27024278 27024278 C A CRYBA4 Silent p.I109I 0.12 TCGA-44-3398-01 22 36678573 36678573 G A MYH9 3'UTR 0.06 TCGA-44-3398-01 22 37771375 37771375 A C ELFN2 Missense_Mutation p.L67R 0.07 deleterious(0) probably_damaging(0.971) TCGA-44-3398-01 22 41832839 41832839 C A TOB2 Missense_Mutation p.A171S 0.08 tolerated(0.29) benign(0.05) TCGA-44-3398-01 22 42461775 42461775 C T NAGA Silent p.V242V 0.08 TCGA-44-3398-01 22 42610599 42610599 G C TCF20 Missense_Mutation p.S238C 0.05 possibly_damaging(0.896) TCGA-44-3398-01 22 46671251 46671251 C T TTC38 Nonsense_Mutation p.Q158* 0.10 TCGA-44-3398-01 22 47073205 47073205 T C GRAMD4 3'UTR 0.36 TCGA-44-3398-01 22 50277426 50277426 G C ZBED4 Missense_Mutation p.R39T 0.03 tolerated_low_confidence(0.22) benign(0.007) TCGA-44-3398-01 2 136552261 136552261 G C LCT Silent p.L1687L 0.04 TCGA-44-3398-01 2 141260574 141260574 G T LRP1B Missense_Mutation p.H2874N 0.09 benign(0.322) TCGA-44-3398-01 2 141260575 141260575 G T LRP1B Missense_Mutation p.D2873E 0.09 possibly_damaging(0.739) TCGA-44-3398-01 2 155566153 155566153 C T KCNJ3 Silent p.D247D 0.09 TCGA-44-3398-01 2 185802747 185802747 T G ZNF804A Nonsense_Mutation p.L875* 0.15 TCGA-44-3398-01 2 234072375 234072375 G A INPP5D Silent p.K409K 0.03 TCGA-44-3398-01 2 242681862 242681862 G C D2HGDH Missense_Mutation p.E121D 0.13 tolerated(0.43) benign(0.013) TCGA-44-3398-01 2 42990262 42990262 A T OXER1 Missense_Mutation p.V353E 0.10 deleterious(0) probably_damaging(0.955) TCGA-44-3398-01 2 61633065 61633068 CTCT - USP34 Frame_Shift_Del p.R109Sfs*13 0.12 TCGA-44-3398-01 2 69734606 69734606 G C AAK1 Missense_Mutation p.S704C 0.11 deleterious(0) probably_damaging(0.995) TCGA-44-3398-01 2 95847781 95847782 - T ZNF2 Frame_Shift_Ins p.G404Wfs*104 0.10 TCGA-44-3398-01 3 111671462 111671462 G T PHLDB2 Missense_Mutation p.G892V 0.13 deleterious(0.01) benign(0.013) TCGA-44-3398-01 3 122134359 122134359 G A WDR5B Missense_Mutation p.S6L 0.12 tolerated(0.23) benign(0) TCGA-44-3398-01 3 124174058 124174058 T A KALRN Missense_Mutation p.L1194Q 0.14 deleterious(0.04) benign(0.3) TCGA-44-3398-01 3 153909105 153909105 A G ARHGEF26 Silent p.V556V 0.15 TCGA-44-3398-01 3 165547424 165547424 A T BCHE Missense_Mutation p.H466Q 0.09 deleterious(0) probably_damaging(1) TCGA-44-3398-01 3 180322027 180322027 A G TTC14 Silent p.L167L 0.11 TCGA-44-3398-01 3 27462219 27462219 C A SLC4A7 Missense_Mutation p.R486L 0.10 deleterious(0) probably_damaging(0.963) TCGA-44-3398-01 3 33216515 33216515 C T SUSD5 Missense_Mutation p.R154H 0.09 tolerated(0.88) benign(0.14) TCGA-44-3398-01 3 38524628 38524628 G T ACVR2B Splice_Site p.X449_splice 0.08 TCGA-44-3398-01 3 43474152 43474152 A T ANO10 Missense_Mutation p.M622K 0.06 tolerated(0.67) benign(0.004) TCGA-44-3398-01 4 109841756 109841756 G A COL25A1 Missense_Mutation p.P238L 0.13 tolerated(0.24) unknown(0) TCGA-44-3398-01 4 119745815 119745815 C A SEC24D Missense_Mutation p.G70C 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.711) TCGA-44-3398-01 4 122853827 122853827 T A TRPC3 Missense_Mutation p.N196Y 0.07 deleterious(0) possibly_damaging(0.467) TCGA-44-3398-01 4 156281387 156281387 G T MAP9 Missense_Mutation p.T328K 0.09 tolerated(0.18) possibly_damaging(0.798) TCGA-44-3398-01 4 169432647 169432647 C T PALLD 5'UTR 0.14 TCGA-44-3398-01 4 170321765 170321765 G A NEK1 Silent p.C1207C 0.19 TCGA-44-3398-01 4 2233854 2233854 G C HAUS3 Missense_Mutation p.Q538E 0.18 deleterious(0.05) benign(0.149) TCGA-44-3398-01 4 40434729 40434729 G A RBM47 Missense_Mutation p.A494V 0.11 tolerated_low_confidence(0.37) benign(0.211) TCGA-44-3398-01 4 47033584 47033584 A G GABRB1 5'UTR 0.16 TCGA-44-3398-01 4 71020089 71020089 C T C4orf40 5'UTR 0.09 TCGA-44-3398-01 5 115329519 115329519 G A AQPEP Missense_Mutation p.V448I 0.09 tolerated(1) benign(0.006) TCGA-44-3398-01 5 140741283 140741283 C T PCDHGB2 Silent p.A527A 0.12 TCGA-44-3398-01 5 148617109 148617109 T A ABLIM3 Nonsense_Mutation p.Y329* 0.20 TCGA-44-3398-01 5 154397003 154397003 C T KIF4B Missense_Mutation p.S1195L 0.10 tolerated(0.32) benign(0) TCGA-44-3398-01 5 162866386 162866386 G A CCNG1 Missense_Mutation p.D42N 0.04 deleterious(0) probably_damaging(0.979) TCGA-44-3398-01 5 169111325 169111325 C G DOCK2 Silent p.L244L 0.08 TCGA-44-3398-01 5 24487847 24487847 G C CDH10 Nonsense_Mutation p.Y764* 0.22 TCGA-44-3398-01 5 40931182 40931182 A G C7 Missense_Mutation p.N27D 0.08 tolerated(0.06) benign(0.053) TCGA-44-3398-01 5 52206136 52206136 A C ITGA1 Missense_Mutation p.N582H 0.08 deleterious(0) probably_damaging(0.999) TCGA-44-3398-01 5 52371076 52371076 G A ITGA2 Missense_Mutation p.D923N 0.06 tolerated(0.06) possibly_damaging(0.589) TCGA-44-3398-01 5 73163757 73163757 G T ARHGEF28 Missense_Mutation p.V737L 0.09 tolerated(0.72) benign(0.001) TCGA-44-3398-01 5 9066574 9066574 C A SEMA5A Missense_Mutation p.R753L 0.15 deleterious(0) probably_damaging(0.998) TCGA-44-3398-01 6 10874367 10874367 A T GCM2 Missense_Mutation p.V461E 0.13 deleterious(0) benign(0.068) TCGA-44-3398-01 6 112471753 112471753 T C LAMA4 Silent p.R711R 0.13 TCGA-44-3398-01 6 114378488 114378488 C T HS3ST5 Missense_Mutation p.R325H 0.11 tolerated(0.26) benign(0.001) TCGA-44-3398-01 6 116574053 116574053 G A TSPYL4 Silent p.I373I 0.23 TCGA-44-3398-01 6 117130667 117130667 C A GPRC6A Missense_Mutation p.C103F 0.12 deleterious(0) probably_damaging(1) TCGA-44-3398-01 6 118953676 118953676 T A CEP85L Missense_Mutation p.S61C 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-44-3398-01 6 130762134 130762134 G T TMEM200A Missense_Mutation p.M189I 0.10 tolerated(0.4) benign(0.001) TCGA-44-3398-01 6 13307827 13307827 C A TBC1D7 Intron 0.11 TCGA-44-3398-01 6 161508851 161508851 C T MAP3K4 Silent p.L896L 0.22 TCGA-44-3398-01 6 167753646 167753646 G T TTLL2 Silent p.P86P 0.16 TCGA-44-3398-01 6 24462987 24462987 T C GPLD1 Silent p.A286A 0.11 TCGA-44-3398-01 6 29644805 29644805 T C ZFP57 5'UTR 0.09 TCGA-44-3398-01 6 31323207 31323207 C G HLA-B Missense_Mutation p.G261A 0.04 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-44-3398-01 6 33246358 33246358 C A B3GALT4 3'UTR 0.09 TCGA-44-3398-01 6 42796705 42796705 C T GLTSCR1L Nonsense_Mutation p.Q212* 0.09 TCGA-44-3398-01 6 43007936 43007936 G C CUL7 Missense_Mutation p.L1502V 0.04 deleterious(0) benign(0.44) TCGA-44-3398-01 6 43333100 43333100 T A ZNF318 Missense_Mutation p.S160C 0.12 possibly_damaging(0.789) TCGA-44-3398-01 6 56382331 56382331 C G DST Missense_Mutation p.D3450H 0.11 probably_damaging(0.979) TCGA-44-3398-01 6 56468068 56468068 A T DST Intron 0.17 TCGA-44-3398-01 6 90605301 90605301 A C GJA10 Missense_Mutation p.T372P 0.12 tolerated(0.34) benign(0.002) TCGA-44-3398-01 7 102100065 102100065 C G ALKBH4 Missense_Mutation p.G103R 0.04 deleterious(0) probably_damaging(0.999) TCGA-44-3398-01 7 11013900 11013900 C G PHF14 5'UTR 0.22 TCGA-44-3398-01 7 121942174 121942174 G A FEZF1 Silent p.G435G 0.10 TCGA-44-3398-01 7 127014855 127014855 T A ZNF800 Nonsense_Mutation p.K179* 0.11 TCGA-44-3398-01 7 141490127 141490127 C G TAS2R5 5'UTR 0.06 TCGA-44-3398-01 7 142605804 142605804 G T TRPV5 Missense_Mutation p.S689Y 0.07 deleterious(0) probably_damaging(0.982) TCGA-44-3398-01 7 143826479 143826479 T A OR2A14 Missense_Mutation p.S92T 0.10 deleterious(0.03) benign(0.32) TCGA-44-3398-01 7 150493537 150493537 C T TMEM176B Missense_Mutation p.G41S 0.11 tolerated(0.33) benign(0.006) TCGA-44-3398-01 7 80418660 80418660 G T SEMA3C Missense_Mutation p.A439D 0.07 deleterious(0) probably_damaging(0.995) TCGA-44-3398-01 7 81626548 81626548 G T CACNA2D1 Missense_Mutation p.P537T 0.10 deleterious(0) probably_damaging(0.999) TCGA-44-3398-01 8 105405013 105405013 C A DPYS Missense_Mutation p.R481L 0.09 tolerated(0.08) benign(0.002) TCGA-44-3398-01 8 108348464 108348464 C T ANGPT1 Silent p.L163L 0.08 TCGA-44-3398-01 8 11177386 11177386 G T MTMR9 Intron 0.14 TCGA-44-3398-01 8 116599248 116599248 C T TRPS1 Missense_Mutation p.E894K 0.05 tolerated_low_confidence(0.05) benign(0.223) TCGA-44-3398-01 8 144800454 144800454 C A MAPK15 Missense_Mutation p.L90M 0.10 deleterious(0) probably_damaging(0.957) TCGA-44-3398-01 8 144991151 144991151 C T PLEC Missense_Mutation p.V4417M 0.19 probably_damaging(0.98) TCGA-44-3398-01 8 16032786 16032786 G T MSR1 Missense_Mutation p.Q43K 0.07 tolerated(0.14) possibly_damaging(0.69) TCGA-44-3398-01 9 111745468 111745468 T A CTNNAL1 Missense_Mutation p.D286V 0.07 deleterious(0.02) benign(0.243) TCGA-44-3398-01 9 135205014 135205014 C T SETX Silent p.L657L 0.05 TCGA-44-3398-01 9 21837988 21837988 G A MTAP Silent p.P143P 0.12 TCGA-44-3398-01 9 32541658 32541658 T C TOPORS Missense_Mutation p.I955M 0.10 deleterious_low_confidence(0.04) unknown(0) TCGA-44-3398-01 9 33948372 33948372 C A UBAP2 Missense_Mutation p.D424Y 0.11 deleterious(0) probably_damaging(0.99) TCGA-44-3398-01 9 37730993 37730993 G T FRMPD1 Nonsense_Mutation p.E251* 0.11 TCGA-44-3398-01 9 94973045 94973045 T A IARS 3'UTR 0.10 TCGA-44-3398-01 X 100617167 100617167 C A BTK Missense_Mutation p.E194D 0.10 tolerated(0.54) benign(0.006) TCGA-44-3398-01 X 101092628 101092628 T A NXF5 Splice_Site p.X307_splice 0.14 TCGA-44-3398-01 X 107400454 107400454 G T COL4A6 Missense_Mutation p.L1618M 0.11 possibly_damaging(0.469) TCGA-44-3398-01 X 107978239 107978239 G T IRS4 Missense_Mutation p.P446T 0.09 tolerated_low_confidence(0.11) benign(0.093) TCGA-44-3398-01 X 109459811 109459811 G C AMMECR1 Missense_Mutation p.R212G 0.06 deleterious(0) possibly_damaging(0.765) TCGA-44-3398-01 X 118284472 118284472 T C KIAA1210 Missense_Mutation p.Y24C 0.11 deleterious_low_confidence(0) possibly_damaging(0.629) TCGA-44-3398-01 X 122318381 122318386 GGCGTA TGCGTAG GRIA3 5'UTR 0.16 TCGA-44-3398-01 X 130408770 130408770 C A IGSF1 Missense_Mutation p.G1190V 0.09 tolerated(0.07) probably_damaging(1) TCGA-44-3398-01 X 147743758 147743758 G - AFF2 Frame_Shift_Del p.A171Qfs*14 0.16 TCGA-44-3398-01 X 153641823 153641823 C A TAZ Missense_Mutation p.P97T 0.06 tolerated(0.38) benign(0.221) TCGA-44-3398-01 X 17167141 17167141 A G REPS2 3'UTR 0.10 TCGA-44-3398-01 X 23685884 23685884 G T PRDX4 Missense_Mutation p.R66L 0.08 deleterious(0.05) benign(0.173) TCGA-44-3398-01 X 30269436 30269436 G C MAGEB1 Missense_Mutation p.A276P 0.14 deleterious(0) probably_damaging(0.999) TCGA-44-3398-01 X 49047927 49047927 C G SYP Missense_Mutation p.Q303H 0.09 deleterious(0.02) unknown(0) TCGA-44-3398-01 X 49958059 49958059 T A AKAP4 Silent p.I435I 0.10 TCGA-44-3398-01 X 49958061 49958061 T A AKAP4 Missense_Mutation p.I435L 0.10 tolerated(1) benign(0.003) TCGA-44-3398-01 X 52825631 52825631 C T SPANXN5 Missense_Mutation p.S39N 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-44-3398-01 X 57620531 57620531 G A ZXDB Missense_Mutation p.A684T 0.07 tolerated(0.96) benign(0.001) TCGA-44-3398-01 X 63411089 63411089 G C AMER1 Missense_Mutation p.P693R 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-44-3398-01 X 63412785 63412785 G A AMER1 Missense_Mutation p.P128S 0.09 tolerated(0.09) benign(0.088) TCGA-44-3398-01 X 68381829 68381829 C A PJA1 Missense_Mutation p.G418V 0.10 tolerated(0.06) benign(0.036) TCGA-44-3398-01 X 70340930 70340930 C A MED12 Silent p.P221P 0.09 TCGA-44-3398-01 X 78010375 78010375 C A LPAR4 Missense_Mutation p.D3E 0.12 tolerated_low_confidence(0.1) unknown(0) TCGA-44-3398-01 X 9001120 9001120 G A FAM9B Intron 0.11 TCGA-44-3398-01 X 91134239 91134239 C A PCDH11X Silent p.T1000T 0.11 TCGA-44-3398-01 X 99917179 99917179 G A SRPX2 Missense_Mutation p.R57Q 0.08 tolerated(0.58) benign(0.003) TCGA-44-3917-01 10 100189342 100189342 C A HPS1 Missense_Mutation p.D309Y 0.19 deleterious(0.01) possibly_damaging(0.809) TCGA-44-3917-01 10 100401679 100401679 C T HPSE2 Silent p.R341R 0.34 TCGA-44-3917-01 10 103906985 103906985 C T PPRC1 Silent p.A1412A 0.20 TCGA-44-3917-01 10 129536844 129536844 T C FOXI2 Missense_Mutation p.F191S 0.82 deleterious(0) probably_damaging(0.968) TCGA-44-3917-01 10 135204928 135204928 C T PAOX Missense_Mutation p.P502L 0.39 tolerated(0.33) benign(0.006) TCGA-44-3917-01 10 135369308 135369308 C A SYCE1 Missense_Mutation p.R232L 0.46 deleterious(0.01) probably_damaging(1) TCGA-44-3917-01 10 18254460 18254460 G A SLC39A12 Missense_Mutation p.E198K 0.09 tolerated(0.52) benign(0.001) TCGA-44-3917-01 10 43089253 43089253 T C ZNF33B Missense_Mutation p.E382G 0.26 deleterious(0) probably_damaging(1) TCGA-44-3917-01 10 72462141 72462141 C A ADAMTS14 Missense_Mutation p.A199D 0.30 tolerated(0.41) possibly_damaging(0.752) TCGA-44-3917-01 10 72538203 72538203 G T TBATA Intron 0.36 TCGA-44-3917-01 10 75673072 75673072 C G PLAU Silent p.P131P 0.26 TCGA-44-3917-01 10 87406801 87406801 C A GRID1 Intron 0.28 TCGA-44-3917-01 11 102649352 102649352 C T MMP10 Intron 0.32 TCGA-44-3917-01 11 118210177 118210177 G T CD3D Missense_Mutation p.Q147K 0.38 deleterious(0.01) possibly_damaging(0.692) TCGA-44-3917-01 11 118252125 118252125 G A UBE4A Silent p.L639L 0.09 TCGA-44-3917-01 11 118252126 118252126 G T UBE4A Missense_Mutation p.G640C 0.09 tolerated(0.11) benign(0.159) TCGA-44-3917-01 11 122944247 122944247 G T CLMP Missense_Mutation p.L353M 0.14 tolerated(0.08) possibly_damaging(0.779) TCGA-44-3917-01 11 124135674 124135674 C A OR8G5 Missense_Mutation p.P318T 0.44 deleterious(0) probably_damaging(0.956) TCGA-44-3917-01 11 124481510 124481510 C T PANX3 Missense_Mutation p.R20C 0.25 deleterious(0) possibly_damaging(0.61) TCGA-44-3917-01 11 130331984 130331984 C A ADAMTS15 Missense_Mutation p.H365N 0.32 deleterious(0) probably_damaging(1) TCGA-44-3917-01 11 20940871 20940871 G T NELL1 Missense_Mutation p.M250I 0.50 tolerated(0.32) benign(0.358) TCGA-44-3917-01 11 21135215 21135215 G C NELL1 Missense_Mutation p.D461H 0.50 tolerated(0.08) probably_damaging(0.928) TCGA-44-3917-01 11 4510693 4510693 G C OR52K1 Missense_Mutation p.R188T 0.38 deleterious(0.05) possibly_damaging(0.9) TCGA-44-3917-01 11 4608061 4608061 C A OR52I2 Silent p.R7R 0.57 TCGA-44-3917-01 11 51515991 51515991 C T OR4C46 Missense_Mutation p.T237I 0.43 deleterious_low_confidence(0.02) possibly_damaging(0.562) TCGA-44-3917-01 11 5221400 5221400 G T OR51V1 Nonsense_Mutation p.Y177* 0.42 TCGA-44-3917-01 11 57971605 57971605 C A OR1S2 Nonsense_Mutation p.E17* 0.27 TCGA-44-3917-01 11 64419062 64419062 C T NRXN2 Silent p.E861E 0.16 TCGA-44-3917-01 11 65714875 65714875 G T TSGA10IP RNA 0.22 TCGA-44-3917-01 11 65792699 65792699 C T CATSPER1 Silent p.Q384Q 0.09 TCGA-44-3917-01 11 65984210 65984210 C A PACS1 Silent p.T314T 0.09 TCGA-44-3917-01 12 101520739 101520739 A T ANO4 Missense_Mutation p.E885V 0.18 deleterious(0) probably_damaging(1) TCGA-44-3917-01 12 101876581 101876581 G T SPIC Silent p.A74A 0.14 TCGA-44-3917-01 12 10560117 10560117 C T KLRC4 3'UTR 0.50 TCGA-44-3917-01 12 109052513 109052513 C A CORO1C Splice_Site p.X210_splice 0.26 TCGA-44-3917-01 12 109052515 109052515 G A CORO1C Missense_Mutation p.A210V 0.26 tolerated(0.1) benign(0.02) TCGA-44-3917-01 12 113379668 113379668 C T OAS3 Intron 0.19 TCGA-44-3917-01 12 121471496 121471496 C A OASL Missense_Mutation p.E83D 0.33 tolerated(1) benign(0.085) TCGA-44-3917-01 12 12333977 12333977 C A LRP6 Missense_Mutation p.G458V 0.44 deleterious(0) probably_damaging(0.993) TCGA-44-3917-01 12 124349234 124349234 G T DNAH10 Missense_Mutation p.G2216V 0.16 probably_damaging(0.999) TCGA-44-3917-01 12 132539527 132539527 C T EP400 Silent p.T2579T 0.12 TCGA-44-3917-01 12 133237579 133237579 G A POLE Silent p.Y1012Y 0.16 TCGA-44-3917-01 12 133454184 133454184 C T CHFR Missense_Mutation p.V64I 0.13 tolerated(0.6) benign(0.002) TCGA-44-3917-01 12 13716580 13716580 C A GRIN2B Nonsense_Mutation p.E1198* 0.35 TCGA-44-3917-01 12 25398285 25398285 C T KRAS Missense_Mutation p.G12S 0.31 deleterious(0.03) possibly_damaging(0.644) TCGA-44-3917-01 12 29617567 29617567 G A OVCH1 Silent p.A666A 0.25 TCGA-44-3917-01 12 41966841 41966841 C T PDZRN4 Missense_Mutation p.R754C 0.33 tolerated(0.18) probably_damaging(0.939) TCGA-44-3917-01 12 49172041 49172041 C T ADCY6 Splice_Site p.X289_splice 0.08 TCGA-44-3917-01 12 49994435 49994435 C T FAM186B Missense_Mutation p.D330N 0.15 tolerated(0.07) possibly_damaging(0.668) TCGA-44-3917-01 12 51128881 51128881 C T DIP2B Missense_Mutation p.P1357S 0.12 deleterious(0) probably_damaging(0.997) TCGA-44-3917-01 12 5154057 5154057 C T KCNA5 Silent p.S248S 0.10 TCGA-44-3917-01 12 57587416 57587416 G T LRP1 Missense_Mutation p.W2584C 0.12 probably_damaging(0.968) TCGA-44-3917-01 12 57972125 57972125 G C KIF5A Missense_Mutation p.Q846H 0.11 deleterious(0) probably_damaging(0.997) TCGA-44-3917-01 12 70948945 70948945 G T PTPRB Missense_Mutation p.A1713D 0.31 deleterious(0) possibly_damaging(0.848) TCGA-44-3917-01 12 71834008 71834008 G A LGR5 Missense_Mutation p.V50M 0.30 deleterious(0.01) probably_damaging(0.939) TCGA-44-3917-01 12 72036303 72036303 G C ZFC3H1 Missense_Mutation p.Q514E 0.10 deleterious(0.04) benign(0.197) TCGA-44-3917-01 12 77417736 77417736 C T E2F7 3'UTR 0.11 TCGA-44-3917-01 12 78415526 78415526 G T NAV3 Splice_Site p.X636_splice 0.29 TCGA-44-3917-01 12 91449563 91449563 C A KERA Nonsense_Mutation p.E166* 0.16 TCGA-44-3917-01 12 96680494 96680494 T C CDK17 Silent p.L388L 0.32 TCGA-44-3917-01 13 111158920 111158920 G A COL4A2 Missense_Mutation p.E1521K 0.47 unknown(0) TCGA-44-3917-01 13 19748129 19748129 C A TUBA3C Silent p.V409V 0.38 TCGA-44-3917-01 13 46716461 46716461 G C LCP1 Missense_Mutation p.L490V 0.35 deleterious(0.01) probably_damaging(0.938) TCGA-44-3917-01 13 70281857 70281857 C A KLHL1 Missense_Mutation p.C696F 0.23 deleterious(0) probably_damaging(0.986) TCGA-44-3917-01 13 70681737 70681737 G - KLHL1 Frame_Shift_Del p.P32Rfs*34 0.30 TCGA-44-3917-01 13 96264392 96264392 C A DZIP1 Missense_Mutation p.D405Y 0.32 deleterious(0) possibly_damaging(0.73) TCGA-44-3917-01 14 105408709 105408709 C A AHNAK2 Missense_Mutation p.G4360V 0.26 benign(0.155) TCGA-44-3917-01 14 105416792 105416792 G T AHNAK2 Missense_Mutation p.P1666T 0.22 probably_damaging(0.999) TCGA-44-3917-01 14 107083522 107083522 G C IGHV4-59 Missense_Mutation p.P28A 0.20 deleterious_low_confidence(0.02) benign(0.027) TCGA-44-3917-01 14 19378083 19378083 T A OR11H12 Missense_Mutation p.W164R 0.08 deleterious(0) probably_damaging(1) TCGA-44-3917-01 14 21238751 21238751 T C EDDM3B Nonstop_Mutation p.*148Qext*18 0.40 TCGA-44-3917-01 14 21699157 21699157 C A HNRNPC Missense_Mutation p.G106W 0.27 deleterious(0.02) probably_damaging(0.951) TCGA-44-3917-01 14 63174777 63174777 C A KCNH5 Nonsense_Mutation p.G806* 0.26 TCGA-44-3917-01 14 74061762 74061762 C G ACOT4 Missense_Mutation p.P224A 0.17 deleterious(0.01) benign(0.064) TCGA-44-3917-01 14 81563050 81563050 G T TSHR Missense_Mutation p.V205F 0.17 deleterious(0) possibly_damaging(0.846) TCGA-44-3917-01 14 88707095 88707095 C G KCNK10 Missense_Mutation p.D158H 0.20 deleterious(0) probably_damaging(0.998) TCGA-44-3917-01 14 90651289 90651289 G T KCNK13 Missense_Mutation p.G390V 0.29 deleterious(0) probably_damaging(0.973) TCGA-44-3917-01 14 90651290 90651290 G C KCNK13 Silent p.G390G 0.28 TCGA-44-3917-01 15 25349942 25349942 A G SNORD116-30 5'Flank 0.54 TCGA-44-3917-01 15 50474614 50474614 C T SLC27A2 5'UTR 0.21 TCGA-44-3917-01 15 55838340 55838340 G C PYGO1 Missense_Mutation p.L381V 0.43 deleterious(0) probably_damaging(0.998) TCGA-44-3917-01 15 56923779 56923779 G C ZNF280D Missense_Mutation p.Q953E 0.40 tolerated(0.12) benign(0.002) TCGA-44-3917-01 15 62244157 62244157 T A VPS13C Missense_Mutation p.K1441I 0.35 tolerated(0.21) benign(0.14) TCGA-44-3917-01 15 74703902 74703902 G A SEMA7A Silent p.S524S 0.43 TCGA-44-3917-01 15 76019523 76019523 C G ODF3L1 Missense_Mutation p.P156R 0.27 deleterious(0) probably_damaging(1) TCGA-44-3917-01 15 94841912 94841912 G A MCTP2 Missense_Mutation p.D140N 0.13 tolerated(0.14) benign(0.003) TCGA-44-3917-01 16 19501839 19501839 G A TMC5 Missense_Mutation p.R899Q 0.42 tolerated(1) benign(0.002) TCGA-44-3917-01 16 21216863 21216863 C T ZP2 Missense_Mutation p.G191S 0.19 tolerated(0.15) benign(0.08) TCGA-44-3917-01 16 31382655 31382655 G T ITGAX Missense_Mutation p.R614S 0.35 deleterious(0) probably_damaging(0.997) TCGA-44-3917-01 16 3189015 3189015 C T ZNF213 Missense_Mutation p.R213W 0.35 deleterious(0) possibly_damaging(0.79) TCGA-44-3917-01 16 3304218 3304218 C A MEFV Missense_Mutation p.D284Y 0.41 deleterious(0.02) possibly_damaging(0.885) TCGA-44-3917-01 16 58147858 58147858 G A C16orf80 3'UTR 0.21 TCGA-44-3917-01 16 65319253 65319253 G C LINC00922 RNA 0.22 TCGA-44-3917-01 16 68404908 68404908 C G SMPD3 Missense_Mutation p.G393R 0.10 deleterious(0) probably_damaging(0.993) TCGA-44-3917-01 16 72094783 72094783 G A HP Silent p.E405E 0.19 TCGA-44-3917-01 16 75681569 75681569 G A KARS 5'Flank 0.24 TCGA-44-3917-01 16 84623745 84623745 C T COTL1 Missense_Mutation p.G95E 0.09 deleterious(0.01) possibly_damaging(0.686) TCGA-44-3917-01 17 10408150 10408150 C T MYH1 Missense_Mutation p.D890N 0.22 deleterious(0.01) benign(0.326) TCGA-44-3917-01 17 16593998 16593998 G T CCDC144A Missense_Mutation p.G95V 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.766) TCGA-44-3917-01 17 2239688 2239688 G C TSR1 Missense_Mutation p.Q12E 0.35 tolerated(0.74) benign(0.066) TCGA-44-3917-01 17 37357550 37357550 T C RPL19 Silent p.N30N 0.13 TCGA-44-3917-01 17 41585728 41585728 C G DHX8 Missense_Mutation p.T781S 0.12 deleterious(0) possibly_damaging(0.555) TCGA-44-3917-01 17 42759450 42759450 G A CCDC43 Missense_Mutation p.P117S 0.16 deleterious(0.01) possibly_damaging(0.845) TCGA-44-3917-01 17 46867302 46867302 C T TTLL6 Missense_Mutation p.R464Q 0.31 tolerated(0.05) possibly_damaging(0.622) TCGA-44-3917-01 17 46973015 46973015 A T ATP5G1 Splice_Site p.X99_splice 0.28 TCGA-44-3917-01 17 7480233 7480233 G A EIF4A1 Intron 0.24 TCGA-44-3917-01 17 7577534 7577534 C A TP53 Missense_Mutation p.R249S 0.35 deleterious(0) probably_damaging(0.994) TCGA-44-3917-01 18 14784527 14784527 G T ANKRD30B Missense_Mutation p.L555F 0.13 tolerated(0.22) possibly_damaging(0.808) TCGA-44-3917-01 18 33779756 33779756 G T MOCOS Missense_Mutation p.G137V 0.27 deleterious(0.02) benign(0.158) TCGA-44-3917-01 18 56202594 56202594 G A ALPK2 Missense_Mutation p.P1609S 0.38 tolerated(0.08) possibly_damaging(0.743) TCGA-44-3917-01 18 76754853 76754853 G T SALL3 Silent p.A954A 0.35 TCGA-44-3917-01 19 10602580 10602580 C T KEAP1 Missense_Mutation p.G333D 0.48 deleterious(0) probably_damaging(1) TCGA-44-3917-01 19 14070099 14070099 C T DCAF15 Missense_Mutation p.R343W 0.20 deleterious(0) possibly_damaging(0.857) TCGA-44-3917-01 19 17760387 17760387 G A UNC13A Silent p.G483G 0.40 TCGA-44-3917-01 19 1800425 1800425 G - ATP8B3 Frame_Shift_Del p.C393Afs*113 0.17 TCGA-44-3917-01 19 19616216 19616216 G T GATAD2A Missense_Mutation p.R612L 0.25 deleterious(0) probably_damaging(0.999) TCGA-44-3917-01 19 19616217 19616217 C T GATAD2A Silent p.R612R 0.25 TCGA-44-3917-01 19 30935003 30935003 G C ZNF536 Silent p.R178R 0.31 TCGA-44-3917-01 19 38160399 38160399 G C ZNF781 Silent p.L217L 0.38 TCGA-44-3917-01 19 41903824 41903824 G C BCKDHA Missense_Mutation p.R31P 0.47 tolerated(0.14) benign(0.001) TCGA-44-3917-01 19 50209521 50209521 G T CPT1C Missense_Mutation p.K398N 0.43 tolerated(0.21) possibly_damaging(0.745) TCGA-44-3917-01 19 58596626 58596626 C G ZSCAN18 Missense_Mutation p.G376A 0.46 tolerated(0.09) benign(0.112) TCGA-44-3917-01 19 7809941 7809941 G C CD209 Missense_Mutation p.F262L 0.28 tolerated(0.1) benign(0.018) TCGA-44-3917-01 19 9236918 9236918 C T OR7G3 Missense_Mutation p.A237T 0.45 deleterious(0.03) possibly_damaging(0.596) TCGA-44-3917-01 19 9406916 9406916 C T ZNF699 Silent p.E388E 0.38 TCGA-44-3917-01 1 103347321 103347321 C A COL11A1 Missense_Mutation p.V1658L 0.23 unknown(0) TCGA-44-3917-01 1 103428259 103428259 G C COL11A1 Missense_Mutation p.P992A 0.22 unknown(0) TCGA-44-3917-01 1 108115942 108115942 G T VAV3 3'UTR 0.21 TCGA-44-3917-01 1 118537064 118537064 G C SPAG17 Missense_Mutation p.R1715G 0.21 deleterious(0) benign(0.143) TCGA-44-3917-01 1 150471759 150471759 A G TARS2 Missense_Mutation p.Y536C 0.33 deleterious(0) probably_damaging(0.977) TCGA-44-3917-01 1 151288974 151288974 C - PI4KB Frame_Shift_Del p.R7Qfs*11 0.22 TCGA-44-3917-01 1 152188528 152188528 G T HRNR Silent p.G1859G 0.04 TCGA-44-3917-01 1 154242714 154242714 G T UBAP2L Silent p.P1069P 0.28 TCGA-44-3917-01 1 155736139 155736139 G A GON4L Missense_Mutation p.P1042L 0.40 tolerated(1) benign(0) TCGA-44-3917-01 1 156841541 156841541 G A NTRK1 Missense_Mutation p.V282I 0.14 tolerated(0.63) possibly_damaging(0.459) TCGA-44-3917-01 1 158435624 158435624 C A OR10K1 Silent p.T91T 0.15 TCGA-44-3917-01 1 158627389 158627389 G T SPTA1 Missense_Mutation p.L895I 0.53 deleterious(0) probably_damaging(0.999) TCGA-44-3917-01 1 161088929 161088929 G C NIT1 Missense_Mutation p.R35T 0.19 tolerated(0.07) benign(0.044) TCGA-44-3917-01 1 162829313 162829313 G T C1orf110 Missense_Mutation p.H42N 0.12 tolerated(0.07) benign(0.056) TCGA-44-3917-01 1 169529810 169529810 G T F5 Missense_Mutation p.L190M 0.18 deleterious(0.03) probably_damaging(1) TCGA-44-3917-01 1 179347872 179347872 G C AXDND1 Missense_Mutation p.G159R 0.25 deleterious(0.04) probably_damaging(0.979) TCGA-44-3917-01 1 179983536 179983536 G C CEP350 Missense_Mutation p.E650Q 0.21 benign(0.035) TCGA-44-3917-01 1 181701834 181701834 G A CACNA1E Missense_Mutation p.R871K 0.10 tolerated(0.23) benign(0) TCGA-44-3917-01 1 181767590 181767590 G T CACNA1E Nonsense_Mutation p.G2188* 0.08 TCGA-44-3917-01 1 196881924 196881924 C T CFHR4 Missense_Mutation p.S350F 0.15 tolerated(0.1) possibly_damaging(0.485) TCGA-44-3917-01 1 197168635 197168635 T C ZBTB41 Silent p.Q323Q 0.16 TCGA-44-3917-01 1 208206833 208206833 C A PLXNA2 Missense_Mutation p.G1629V 0.12 tolerated(0.07) probably_damaging(0.999) TCGA-44-3917-01 1 215972250 215972250 T A USH2A Silent p.P3319P 0.22 TCGA-44-3917-01 1 215987155 215987155 A T USH2A Missense_Mutation p.V3221D 0.24 possibly_damaging(0.895) TCGA-44-3917-01 1 22050467 22050467 T C USP48 Missense_Mutation p.I524M 0.44 deleterious(0.03) benign(0.062) TCGA-44-3917-01 1 248028158 248028158 T C TRIM58 Missense_Mutation p.V223A 0.31 tolerated(1) benign(0.001) TCGA-44-3917-01 1 248551641 248551641 C A OR2T6 Missense_Mutation p.H244Q 0.23 deleterious(0.02) probably_damaging(1) TCGA-44-3917-01 1 2520985 2520985 G C FAM213B 3'UTR 0.27 TCGA-44-3917-01 1 38397535 38397535 T A INPP5B Intron 0.27 TCGA-44-3917-01 1 43225022 43225022 G T LEPRE1 Missense_Mutation p.Q220K 0.46 tolerated(0.15) benign(0.003) TCGA-44-3917-01 1 52940859 52940859 G C ZCCHC11 Missense_Mutation p.A791G 0.08 tolerated(0.24) benign(0.197) TCGA-44-3917-01 1 53459146 53459146 T A SCP2 Intron 0.28 TCGA-44-3917-01 1 67559156 67559156 G A C1orf141 Silent p.F245F 0.17 TCGA-44-3917-01 1 74670457 74670457 G A FPGT Silent p.V242V 0.24 TCGA-44-3917-01 1 87104663 87104663 C A RP4-651E10.4 Intron 0.29 TCGA-44-3917-01 1 90473096 90473096 A C ZNF326 Silent p.A134A 0.30 TCGA-44-3917-01 20 35262967 35262967 G A SLA2 Silent p.A39A 0.24 TCGA-44-3917-01 20 35262968 35262968 G A SLA2 Missense_Mutation p.A39V 0.24 tolerated(0.23) probably_damaging(1) TCGA-44-3917-01 20 36640313 36640313 G A TTI1 Nonsense_Mutation p.Q636* 0.20 TCGA-44-3917-01 20 44531161 44531161 G T PLTP Missense_Mutation p.T342N 0.08 deleterious(0.01) possibly_damaging(0.72) TCGA-44-3917-01 20 62378320 62378320 G T ZBTB46 Missense_Mutation p.P578Q 0.16 tolerated_low_confidence(0.56) probably_damaging(0.937) TCGA-44-3917-01 20 9498733 9498733 C T LAMP5 Silent p.T174T 0.27 TCGA-44-3917-01 21 30378755 30378755 C G RWDD2B Missense_Mutation p.G315R 0.38 deleterious(0) probably_damaging(0.998) TCGA-44-3917-01 21 46032047 46032047 T C KRTAP10-8 Silent p.Y10Y 0.26 TCGA-44-3917-01 21 47676836 47676836 G A MCM3AP Missense_Mutation p.P1267S 0.15 deleterious(0) probably_damaging(0.996) TCGA-44-3917-01 22 20130477 20130477 G T ZDHHC8 Missense_Mutation p.G442C 0.38 deleterious(0) possibly_damaging(0.845) TCGA-44-3917-01 22 22287854 22287854 C T PPM1F Missense_Mutation p.R219H 0.21 tolerated(0.41) benign(0.013) TCGA-44-3917-01 22 42609497 42609497 C T TCF20 Silent p.G605G 0.31 TCGA-44-3917-01 2 100182019 100182019 C A AFF3 Missense_Mutation p.A1042S 0.18 deleterious(0) probably_damaging(0.989) TCGA-44-3917-01 2 107460245 107460245 G A ST6GAL2 Silent p.G63G 0.15 TCGA-44-3917-01 2 108487496 108487496 C A RGPD4 Silent p.A1012A 0.34 TCGA-44-3917-01 2 11300595 11300595 C - PQLC3 Frame_Shift_Del p.L50Wfs*15 0.12 TCGA-44-3917-01 2 137990690 137990690 G T THSD7B Missense_Mutation p.V713L 0.41 deleterious(0) benign(0.302) TCGA-44-3917-01 2 152273165 152273165 C G RIF1 Missense_Mutation p.S124C 0.14 deleterious(0) probably_damaging(0.999) TCGA-44-3917-01 2 179422737 179422737 T C TTN Missense_Mutation p.Y29115C 0.20 TCGA-44-3917-01 2 179579264 179579264 G C TTN Missense_Mutation p.S8746C 0.12 TCGA-44-3917-01 2 179612395 179612395 G A TTN Intron 0.27 TCGA-44-3917-01 2 187693379 187693379 C A ZSWIM2 Missense_Mutation p.D412Y 0.13 deleterious(0.03) possibly_damaging(0.822) TCGA-44-3917-01 2 196673435 196673435 C T DNAH7 Missense_Mutation p.D3352N 0.32 tolerated(0.38) benign(0.008) TCGA-44-3917-01 2 197559833 197559833 G T CCDC150 Missense_Mutation p.D525Y 0.13 deleterious(0.01) possibly_damaging(0.805) TCGA-44-3917-01 2 211471546 211471546 G T CPS1 Missense_Mutation p.L697F 0.27 tolerated(0.15) benign(0.258) TCGA-44-3917-01 2 21229826 21229826 G T APOB Missense_Mutation p.P3305Q 0.20 probably_damaging(0.999) TCGA-44-3917-01 2 219104162 219104162 G T ARPC2 Silent p.V168V 0.32 TCGA-44-3917-01 2 219206815 219206815 C T PNKD Silent p.Y243Y 0.26 TCGA-44-3917-01 2 220337731 220337731 C T SPEG Nonsense_Mutation p.Q1354* 0.10 TCGA-44-3917-01 2 225729389 225729389 C A DOCK10 Missense_Mutation p.V495L 0.32 tolerated(0.18) benign(0.001) TCGA-44-3917-01 2 228243873 228243873 C G TM4SF20 Missense_Mutation p.D38H 0.20 deleterious(0.05) probably_damaging(0.961) TCGA-44-3917-01 2 228883855 228883855 C A SPHKAP Missense_Mutation p.G572V 0.22 deleterious(0) probably_damaging(0.972) TCGA-44-3917-01 2 238419407 238419407 G T MLPH Missense_Mutation p.G101C 0.23 deleterious(0) probably_damaging(0.916) TCGA-44-3917-01 2 26699772 26699772 G C OTOF Missense_Mutation p.T888R 0.12 deleterious(0) possibly_damaging(0.898) TCGA-44-3917-01 2 69177831 69177831 C G GKN2 Intron 0.22 TCGA-44-3917-01 3 141161461 141161461 C G ZBTB38 Missense_Mutation p.D77E 0.22 tolerated(0.6) possibly_damaging(0.627) TCGA-44-3917-01 3 148459899 148459899 G T AGTR1 Missense_Mutation p.E359D 0.42 tolerated_low_confidence(0.13) benign(0.192) TCGA-44-3917-01 3 164906582 164906582 G T SLITRK3 Silent p.L679L 0.29 TCGA-44-3917-01 3 78717077 78717077 C A ROBO1 Missense_Mutation p.G641V 0.20 deleterious(0) probably_damaging(0.999) TCGA-44-3917-01 4 119810232 119810232 G T SYNPO2 Missense_Mutation p.G14V 0.09 deleterious(0) probably_damaging(0.999) TCGA-44-3917-01 4 126372545 126372545 G T FAT4 Missense_Mutation p.Q3458H 0.23 possibly_damaging(0.853) TCGA-44-3917-01 4 157689054 157689054 C T PDGFC Silent p.K264K 0.10 TCGA-44-3917-01 4 187131684 187131684 G A CYP4V2 Nonsense_Mutation p.W489* 0.20 TCGA-44-3917-01 4 188924219 188924219 G C ZFP42 Silent p.L86L 0.18 TCGA-44-3917-01 4 189020283 189020283 C A TRIML2 Missense_Mutation p.S126I 0.19 deleterious(0) probably_damaging(0.99) TCGA-44-3917-01 4 189060921 189060921 G T TRIML1 Missense_Mutation p.R70L 0.13 deleterious(0.01) benign(0.422) TCGA-44-3917-01 4 70710007 70710007 G T SULT1E1 Nonsense_Mutation p.S215* 0.18 TCGA-44-3917-01 4 7844889 7844889 C T AFAP1 Missense_Mutation p.V175I 0.12 tolerated(0.17) probably_damaging(0.981) TCGA-44-3917-01 4 8584340 8584340 C T GPR78 Missense_Mutation p.L251F 0.13 deleterious(0.01) possibly_damaging(0.714) TCGA-44-3917-01 4 9784769 9784769 G T DRD5 Silent p.L372L 0.15 TCGA-44-3917-01 5 109202695 109202695 G T MAN2A1 Missense_Mutation p.R1144M 0.30 deleterious(0) probably_damaging(0.956) TCGA-44-3917-01 5 122881521 122881521 G A CSNK1G3 Missense_Mutation p.G55E 0.29 deleterious(0) probably_damaging(0.972) TCGA-44-3917-01 5 127666271 127666271 A G FBN2 Missense_Mutation p.C1447R 0.30 deleterious(0) probably_damaging(0.997) TCGA-44-3917-01 5 135290479 135290479 G T LECT2 Missense_Mutation p.T15N 0.44 tolerated(0.49) benign(0.001) TCGA-44-3917-01 5 140182352 140182352 G T PCDHA3 Missense_Mutation p.D524Y 0.31 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-3917-01 5 140237057 140237057 C A PCDHA10 Missense_Mutation p.T475K 0.45 deleterious_low_confidence(0) possibly_damaging(0.906) TCGA-44-3917-01 5 148206918 148206918 G T ADRB2 Missense_Mutation p.R175L 0.43 tolerated(0.08) benign(0.249) TCGA-44-3917-01 5 156381685 156381685 G T TIMD4 Missense_Mutation p.H47Q 0.31 tolerated(1) benign(0) TCGA-44-3917-01 5 156731374 156731374 G T CYFIP2 Missense_Mutation p.K239N 0.33 deleterious(0.04) probably_damaging(0.987) TCGA-44-3917-01 5 9629554 9629554 C A TAS2R1 Missense_Mutation p.L197F 0.39 deleterious(0) probably_damaging(0.999) TCGA-44-3917-01 6 117717407 117717407 T A ROS1 Missense_Mutation p.N267I 0.42 deleterious(0) probably_damaging(1) TCGA-44-3917-01 6 129381039 129381039 C A LAMA2 Missense_Mutation p.Q132K 0.31 deleterious(0.01) benign(0.381) TCGA-44-3917-01 6 26388300 26388300 G T BTN2A2 Nonsense_Mutation p.E168* 0.31 TCGA-44-3917-01 6 38862477 38862477 G C DNAH8 Missense_Mutation p.V2645L 0.18 benign(0.027) TCGA-44-3917-01 6 41752760 41752760 G A PRICKLE4 Missense_Mutation p.G110R 0.44 deleterious(0) probably_damaging(1) TCGA-44-3917-01 6 66115261 66115261 C A EYS Splice_Site p.X288_splice 0.30 TCGA-44-3917-01 6 75887502 75887502 G A COL12A1 Missense_Mutation p.P772S 0.39 benign(0) TCGA-44-3917-01 6 7727778 7727778 C A BMP6 Missense_Mutation p.A197E 0.30 tolerated(0.36) possibly_damaging(0.672) TCGA-44-3917-01 6 97063714 97063714 C A FHL5 3'UTR 0.21 TCGA-44-3917-01 7 129950718 129950718 C A CPA4 Silent p.I295I 0.45 TCGA-44-3917-01 7 129950719 129950719 C A CPA4 Missense_Mutation p.Q296K 0.45 tolerated(1) benign(0.003) TCGA-44-3917-01 7 142206648 142206648 T A TRBV10-2 Silent p.A69A 0.54 TCGA-44-3917-01 7 142639984 142639984 C A KEL Missense_Mutation p.G640V 0.43 deleterious(0) probably_damaging(0.998) TCGA-44-3917-01 7 14724928 14724928 A G DGKB Silent p.Y257Y 0.16 TCGA-44-3917-01 7 151945151 151945151 C A KMT2C Missense_Mutation p.D790Y 0.07 possibly_damaging(0.738) TCGA-44-3917-01 7 27134950 27134950 G T HOXA1 Silent p.P194P 0.36 TCGA-44-3917-01 7 31378043 31378043 G A NEUROD6 Silent p.D280D 0.18 TCGA-44-3917-01 7 32956856 32956856 C T RP9P RNA 0.26 TCGA-44-3917-01 7 34994330 34994330 T A DPY19L1 Missense_Mutation p.I361F 0.20 deleterious(0.01) benign(0.141) TCGA-44-3917-01 7 5085911 5085911 G C RBAK 5'UTR 0.29 TCGA-44-3917-01 7 81579721 81579721 T G CACNA2D1 Missense_Mutation p.H1088P 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.862) TCGA-44-3917-01 7 89982170 89982170 G T GTPBP10 Missense_Mutation p.G25V 0.26 deleterious(0) probably_damaging(0.999) TCGA-44-3917-01 7 92764262 92764262 C G SAMD9L Silent p.L341L 0.20 TCGA-44-3917-01 8 100990225 100990225 T C RGS22 Missense_Mutation p.M1147V 0.19 tolerated(0.13) benign(0.05) TCGA-44-3917-01 8 101051252 101051252 C G RGS22 Missense_Mutation p.K691N 0.20 tolerated(0.11) probably_damaging(0.988) TCGA-44-3917-01 8 10383209 10383209 C A PRSS55 Silent p.A38A 0.32 TCGA-44-3917-01 8 109228682 109228682 C T EIF3E Missense_Mutation p.D304N 0.35 deleterious(0.02) probably_damaging(1) TCGA-44-3917-01 8 113256783 113256783 T A CSMD3 Silent p.P3414P 0.23 TCGA-44-3917-01 8 133187712 133187712 C A KCNQ3 Silent p.L307L 0.12 TCGA-44-3917-01 8 135649890 135649890 C G ZFAT Missense_Mutation p.E88Q 0.19 deleterious(0.04) benign(0.198) TCGA-44-3917-01 8 144996777 144996777 C G PLEC Missense_Mutation p.Q2577H 0.37 probably_damaging(0.963) TCGA-44-3917-01 8 145515470 145515470 G A HSF1 Missense_Mutation p.G11R 0.17 tolerated_low_confidence(0.11) probably_damaging(0.956) TCGA-44-3917-01 8 48711786 48711786 C A PRKDC Nonsense_Mutation p.E3427* 0.55 TCGA-44-3917-01 8 48711787 48711787 C A PRKDC Missense_Mutation p.E3426D 0.54 benign(0.287) TCGA-44-3917-01 8 49986815 49986815 C A C8orf22 Silent p.S52S 0.23 TCGA-44-3917-01 8 52321450 52321450 C A PXDNL Missense_Mutation p.D912Y 0.14 deleterious(0) probably_damaging(0.993) TCGA-44-3917-01 8 59404998 59404998 C A CYP7A1 Missense_Mutation p.G377C 0.21 tolerated(0.07) possibly_damaging(0.904) TCGA-44-3917-01 8 68204157 68204157 C A ARFGEF1 Nonsense_Mutation p.E281* 0.41 TCGA-44-3917-01 8 99440542 99440542 A G KCNS2 Missense_Mutation p.E112G 0.18 deleterious(0) probably_damaging(0.995) TCGA-44-3917-01 9 120476074 120476074 A G TLR4 Missense_Mutation p.I556M 0.47 deleterious(0.04) possibly_damaging(0.659) TCGA-44-3917-01 9 27949294 27949294 C A LINGO2 Missense_Mutation p.R459I 0.57 deleterious(0) probably_damaging(0.997) TCGA-44-3917-01 9 35043367 35043367 C A C9orf131 Missense_Mutation p.H247Q 0.40 tolerated(0.29) benign(0.434) TCGA-44-3917-01 9 70871869 70871869 G T CBWD3 Nonsense_Mutation p.E155* 0.11 TCGA-44-3917-01 X 107423817 107423817 C T COL4A6 Missense_Mutation p.G688S 0.16 probably_damaging(1) TCGA-44-3917-01 X 122755023 122755023 G C THOC2 Missense_Mutation p.P1401A 0.34 tolerated(1) benign(0) TCGA-44-3917-01 X 128724298 128724298 G A OCRL 3'UTR 0.30 TCGA-44-3917-01 X 151093087 151093087 C A MAGEA4 Silent p.V317V 0.43 TCGA-44-3917-01 X 151336897 151336897 G C GABRA3 Missense_Mutation p.P428A 0.30 tolerated(0.28) benign(0.001) TCGA-44-3917-01 X 152858104 152858104 G A FAM58A Silent p.L171L 0.38 TCGA-44-3917-01 X 153760649 153760649 C T G6PD Missense_Mutation p.R469H 0.21 deleterious(0) possibly_damaging(0.889) TCGA-44-3917-01 X 22129672 22129672 C T PHEX Silent p.F389F 0.26 TCGA-44-3917-01 X 22291907 22291907 C A ZNF645 Missense_Mutation p.P267T 0.26 deleterious(0.01) probably_damaging(0.988) TCGA-44-3917-01 X 26211915 26211915 C A MAGEB6 5'UTR 0.27 TCGA-44-3917-01 X 29938169 29938169 G A IL1RAPL1 Missense_Mutation p.G339R 0.22 tolerated(0.65) probably_damaging(0.935) TCGA-44-3917-01 X 52825267 52825267 G T SPANXN5 3'UTR 0.33 TCGA-44-3917-01 X 53586327 53586327 T A HUWE1 Missense_Mutation p.T2635S 0.31 benign(0.292) TCGA-44-3917-01 X 91132836 91132836 G T PCDH11X Nonsense_Mutation p.E533* 0.20 TCGA-44-3918-01 10 115405652 115405652 G T NRAP Missense_Mutation p.H348N 0.23 tolerated(0.75) probably_damaging(0.993) TCGA-44-3918-01 10 115423132 115423132 T C NRAP Missense_Mutation p.Q49R 0.10 deleterious(0.01) possibly_damaging(0.794) TCGA-44-3918-01 10 115609774 115609774 T A DCLRE1A Missense_Mutation p.S364C 0.12 deleterious(0) possibly_damaging(0.847) TCGA-44-3918-01 10 118204012 118204012 T A PNLIPRP3 Missense_Mutation p.I148N 0.26 deleterious(0) probably_damaging(0.973) TCGA-44-3918-01 10 118969762 118969762 T A KCNK18 Silent p.V369V 0.13 TCGA-44-3918-01 10 12191875 12191875 G T SEC61A2 Missense_Mutation p.G126V 0.10 tolerated(0.1) benign(0.021) TCGA-44-3918-01 10 127414293 127414293 A T EDRF1 Silent p.A226A 0.14 TCGA-44-3918-01 10 128769018 128769018 A T DOCK1 Silent p.G33G 0.07 TCGA-44-3918-01 10 1313244 1313244 G C ADARB2 Silent p.S366S 0.14 TCGA-44-3918-01 10 13175538 13175538 G T OPTN Silent p.A523A 0.10 TCGA-44-3918-01 10 135440169 135440169 C A FRG2B Missense_Mutation p.Q26H 0.06 tolerated(0.07) benign(0.244) TCGA-44-3918-01 10 15254994 15254994 C A FAM171A1 Missense_Mutation p.D865Y 0.14 deleterious(0.01) possibly_damaging(0.815) TCGA-44-3918-01 10 15730001 15730001 G T ITGA8 Missense_Mutation p.P127H 0.24 deleterious(0.02) benign(0.103) TCGA-44-3918-01 10 17363171 17363171 G - ST8SIA6 Frame_Shift_Del p.K302Sfs*3 0.12 TCGA-44-3918-01 10 21962656 21962656 G T MLLT10 Missense_Mutation p.G477W 0.29 deleterious(0) probably_damaging(1) TCGA-44-3918-01 10 25510017 25510017 G T GPR158 Silent p.V313V 0.15 TCGA-44-3918-01 10 25886893 25886893 G T GPR158 Missense_Mutation p.G780C 0.13 deleterious(0.02) benign(0.019) TCGA-44-3918-01 10 25887673 25887673 C A GPR158 Missense_Mutation p.P1040T 0.06 tolerated(0.69) benign(0.004) TCGA-44-3918-01 10 27400900 27400900 G C YME1L1 3'UTR 0.14 TCGA-44-3918-01 10 27536480 27536480 A G RP11-85G18.6 Intron 0.16 TCGA-44-3918-01 10 31137881 31137881 T G ZNF438 Missense_Mutation p.N485H 0.18 deleterious(0.01) possibly_damaging(0.525) TCGA-44-3918-01 10 37438728 37438728 T A ANKRD30A Silent p.S476S 0.06 TCGA-44-3918-01 10 37508127 37508127 C A ANKRD30A Missense_Mutation p.Q1107K 0.30 tolerated(0.33) benign(0.005) TCGA-44-3918-01 10 410378 410378 T C DIP2C Missense_Mutation p.N805D 0.29 deleterious(0) benign(0.339) TCGA-44-3918-01 10 43654172 43654172 G T CSGALNACT2 Missense_Mutation p.R224L 0.15 deleterious(0) probably_damaging(0.909) TCGA-44-3918-01 10 4879695 4879695 G T AKR1E2 Silent p.G168G 0.26 TCGA-44-3918-01 10 54032160 54032160 G T PRKG1 Missense_Mutation p.R441I 0.11 deleterious(0) possibly_damaging(0.745) TCGA-44-3918-01 10 5782143 5782143 G T FAM208B Missense_Mutation p.E670D 0.14 deleterious(0.01) benign(0.154) TCGA-44-3918-01 10 5790825 5790825 G T FAM208B Missense_Mutation p.G1814V 0.10 tolerated(1) benign(0) TCGA-44-3918-01 10 61062572 61062572 C A FAM13C Missense_Mutation p.D166Y 0.09 deleterious(0) probably_damaging(0.947) TCGA-44-3918-01 10 71665548 71665548 C A COL13A1 Missense_Mutation p.D307E 0.35 tolerated(0.25) possibly_damaging(0.871) TCGA-44-3918-01 10 75673077 75673077 G T PLAU Missense_Mutation p.C133F 0.15 deleterious(0) probably_damaging(1) TCGA-44-3918-01 10 79753014 79753014 C T POLR3A Missense_Mutation p.A910T 0.26 tolerated(0.42) benign(0.034) TCGA-44-3918-01 10 81697894 81697894 C - SFTPD Frame_Shift_Del p.C281Sfs*25 0.15 TCGA-44-3918-01 10 81923853 81923853 C A ANXA11 Missense_Mutation p.R302L 0.08 tolerated(0.06) probably_damaging(1) TCGA-44-3918-01 10 82267056 82267056 G T TSPAN14 Missense_Mutation p.G69C 0.09 deleterious(0) probably_damaging(1) TCGA-44-3918-01 10 95557293 95557293 G T LGI1 Missense_Mutation p.Q469H 0.20 deleterious(0.01) probably_damaging(1) TCGA-44-3918-01 10 95931134 95931134 G T PLCE1 Missense_Mutation p.G564C 0.17 deleterious(0) probably_damaging(0.971) TCGA-44-3918-01 10 98156978 98156978 T C TLL2 Missense_Mutation p.N450S 0.37 tolerated(0.26) benign(0.019) TCGA-44-3918-01 11 101832914 101832914 G C KIAA1377 Missense_Mutation p.C383S 0.15 tolerated(1) benign(0.001) TCGA-44-3918-01 11 103814331 103814331 C A PDGFD Silent p.A207A 0.14 TCGA-44-3918-01 11 110036179 110036179 G C ZC3H12C Missense_Mutation p.R790P 0.42 tolerated(0.14) possibly_damaging(0.87) TCGA-44-3918-01 11 113105826 113105826 C A NCAM1 Missense_Mutation p.L638I 0.25 tolerated(0.91) benign(0.007) TCGA-44-3918-01 11 113934732 113934732 G T ZBTB16 Missense_Mutation p.G237V 0.14 tolerated(0.39) benign(0.022) TCGA-44-3918-01 11 117335693 117335693 G C DSCAML1 Missense_Mutation p.S1137C 0.10 deleterious(0.01) probably_damaging(0.98) TCGA-44-3918-01 11 117969814 117969814 G T TMPRSS4 Splice_Site p.X53_splice 0.15 TCGA-44-3918-01 11 118428531 118428531 T A IFT46 Silent p.A40A 0.19 TCGA-44-3918-01 11 118509715 118509715 A G PHLDB1 Missense_Mutation p.Q881R 0.19 deleterious(0.01) benign(0.24) TCGA-44-3918-01 11 119044711 119044711 C G NLRX1 Missense_Mutation p.F251L 0.22 deleterious(0) probably_damaging(0.996) TCGA-44-3918-01 11 119045171 119045171 C A NLRX1 Missense_Mutation p.L287M 0.11 deleterious(0) probably_damaging(1) TCGA-44-3918-01 11 120348157 120348157 G A ARHGEF12 Missense_Mutation p.G1152R 0.27 tolerated(0.36) benign(0.056) TCGA-44-3918-01 11 1271501 1271501 G A MUC5B Missense_Mutation p.G4464E 0.19 benign(0.042) TCGA-44-3918-01 11 1272807 1272807 C T MUC5B Silent p.T4899T 0.13 TCGA-44-3918-01 11 1281295 1281295 C A MUC5B Missense_Mutation p.P5635T 0.25 unknown(0) TCGA-44-3918-01 11 128680738 128680739 - A FLI1 Frame_Shift_Ins p.S406Ifs*36 0.13 TCGA-44-3918-01 11 128838969 128838969 G A ARHGAP32 Missense_Mutation p.P2033S 0.17 tolerated_low_confidence(0.07) benign(0.027) TCGA-44-3918-01 11 128838970 128838970 C A ARHGAP32 Silent p.L2032L 0.20 TCGA-44-3918-01 11 1298328 1298328 G T TOLLIP Missense_Mutation p.Q256K 0.14 tolerated(0.1) possibly_damaging(0.626) TCGA-44-3918-01 11 15994452 15994452 C A SOX6 Missense_Mutation p.G777V 0.32 deleterious(0) probably_damaging(0.98) TCGA-44-3918-01 11 1619013 1619013 G A KRTAP5-2 Silent p.S156S 0.09 TCGA-44-3918-01 11 1629527 1629527 C T KRTAP5-3 Missense_Mutation p.G30D 0.10 tolerated_low_confidence(0.09) unknown(0) TCGA-44-3918-01 11 17743008 17743008 C T MYOD1 Nonsense_Mutation p.Q306* 0.07 TCGA-44-3918-01 11 18051103 18051103 A G TPH1 Silent p.R142R 0.09 TCGA-44-3918-01 11 19256308 19256308 C A E2F8 Missense_Mutation p.G250V 0.12 deleterious(0) probably_damaging(1) TCGA-44-3918-01 11 1953727 1953727 G T TNNT3 Nonsense_Mutation p.E52* 0.14 TCGA-44-3918-01 11 22272361 22272361 G T ANO5 Missense_Mutation p.W363L 0.11 deleterious(0.04) probably_damaging(0.938) TCGA-44-3918-01 11 2683345 2683345 G T KCNQ1 Intron 0.19 TCGA-44-3918-01 11 2683347 2683347 A G KCNQ1 Intron 0.20 TCGA-44-3918-01 11 30432968 30432968 G T MPPED2 3'UTR 0.10 TCGA-44-3918-01 11 32636212 32636212 T C CCDC73 Missense_Mutation p.H551R 0.17 tolerated(0.35) benign(0.006) TCGA-44-3918-01 11 33564725 33564725 G C KIAA1549L Missense_Mutation p.R242T 0.39 tolerated_low_confidence(1) benign(0) TCGA-44-3918-01 11 379922 379922 G A B4GALNT4 Missense_Mutation p.A849T 0.11 tolerated(0.45) unknown(0) TCGA-44-3918-01 11 3844950 3844950 A T PGAP2 Intron 0.20 TCGA-44-3918-01 11 397119 397119 C G PKP3 Silent p.A206A 0.35 TCGA-44-3918-01 11 40137638 40137638 C A LRRC4C Nonsense_Mutation p.E69* 0.12 TCGA-44-3918-01 11 43940650 43940650 G C ALKBH3 Missense_Mutation p.L244F 0.10 deleterious(0.03) probably_damaging(1) TCGA-44-3918-01 11 48510594 48510594 T A OR4A47 Missense_Mutation p.F84I 0.11 deleterious_low_confidence(0.03) benign(0.137) TCGA-44-3918-01 11 4869647 4869647 G T OR51S1 Silent p.L264L 0.09 TCGA-44-3918-01 11 49168457 49168457 C T FOLH1 Missense_Mutation p.G702R 0.19 deleterious(0) probably_damaging(1) TCGA-44-3918-01 11 4945394 4945394 C A OR51G1 Missense_Mutation p.G59V 0.28 tolerated(0.06) benign(0.024) TCGA-44-3918-01 11 49974729 49974729 G T OR4C13 Missense_Mutation p.C252F 0.15 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-44-3918-01 11 5068575 5068575 C A OR52J3 Missense_Mutation p.H274N 0.13 deleterious(0.01) possibly_damaging(0.597) TCGA-44-3918-01 11 5142639 5142639 G A OR52A4 RNA 0.08 TCGA-44-3918-01 11 5221709 5221709 C T OR51V1 Missense_Mutation p.M74I 0.11 tolerated(0.13) benign(0.02) TCGA-44-3918-01 11 5462385 5462385 C G OR51I1 Missense_Mutation p.M120I 0.07 deleterious(0) benign(0.046) TCGA-44-3918-01 11 55038012 55038012 A T TRIM48 3'UTR 0.39 TCGA-44-3918-01 11 55432961 55432961 G T OR4C6 Missense_Mutation p.G107C 0.31 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-44-3918-01 11 55798170 55798170 C A OR5AS1 Silent p.I92I 0.35 TCGA-44-3918-01 11 55890270 55890270 G T OR8H3 Missense_Mutation p.C141F 0.10 deleterious(0) probably_damaging(0.986) TCGA-44-3918-01 11 55944578 55944578 G T OR5J2 Missense_Mutation p.S162I 0.20 tolerated(0.39) possibly_damaging(0.493) TCGA-44-3918-01 11 56230095 56230095 G T OR5M9 Silent p.P261P 0.21 TCGA-44-3918-01 11 56230096 56230096 G T OR5M9 Missense_Mutation p.P261H 0.21 deleterious(0.03) probably_damaging(0.976) TCGA-44-3918-01 11 56344738 56344738 G T OR5M10 Missense_Mutation p.L154I 0.08 tolerated(0.1) possibly_damaging(0.724) TCGA-44-3918-01 11 56468589 56468589 C A OR9G1 Silent p.S242S 0.06 TCGA-44-3918-01 11 56756596 56756596 G T OR5AK2 Missense_Mutation p.D70Y 0.12 deleterious(0.01) benign(0.15) TCGA-44-3918-01 11 57971092 57971092 G T OR1S2 Missense_Mutation p.P188T 0.27 deleterious(0.02) possibly_damaging(0.7) TCGA-44-3918-01 11 5799305 5799305 T A OR52N5 Missense_Mutation p.Y187F 0.09 deleterious(0.01) probably_damaging(0.979) TCGA-44-3918-01 11 5799752 5799752 G T OR52N5 Missense_Mutation p.P38Q 0.08 deleterious(0) probably_damaging(0.91) TCGA-44-3918-01 11 59132758 59132758 C T OR5AN1 Missense_Mutation p.S276F 0.13 deleterious(0) probably_damaging(0.987) TCGA-44-3918-01 11 59225307 59225307 C A OR4D6 Missense_Mutation p.Q292K 0.18 tolerated(0.51) benign(0.007) TCGA-44-3918-01 11 59633999 59633999 G C TCN1 5'UTR 0.13 TCGA-44-3918-01 11 60184275 60184275 C A MS4A14 Missense_Mutation p.Q645K 0.36 tolerated(0.27) benign(0.022) TCGA-44-3918-01 11 61091481 61091481 G C DDB1 Silent p.L297L 0.08 TCGA-44-3918-01 11 61197628 61197628 T C SDHAF2 Missense_Mutation p.S4P 0.11 tolerated_low_confidence(0.3) benign(0) TCGA-44-3918-01 11 62997067 62997067 G T SLC22A25 Missense_Mutation p.Q20K 0.23 deleterious(0) possibly_damaging(0.811) TCGA-44-3918-01 11 63137513 63137513 C A SLC22A9 5'UTR 0.06 TCGA-44-3918-01 11 64329846 64329846 G A SLC22A11 Missense_Mutation p.D254N 0.40 tolerated(0.08) possibly_damaging(0.6) TCGA-44-3918-01 11 6520073 6520073 G A DNHD1 Missense_Mutation p.V210M 0.10 benign(0.125) TCGA-44-3918-01 11 65824773 65824773 C T SF3B2 Missense_Mutation p.T235I 0.16 tolerated_low_confidence(0.07) benign(0.011) TCGA-44-3918-01 11 66082936 66082936 A T CD248 Nonsense_Mutation p.Y521* 0.14 TCGA-44-3918-01 11 6630604 6630604 G C ILK Missense_Mutation p.K231N 0.06 tolerated(0.34) probably_damaging(0.937) TCGA-44-3918-01 11 66368020 66368020 G T CCS Silent p.R163R 0.10 TCGA-44-3918-01 11 67190960 67190960 G A CARNS1 Missense_Mutation p.E581K 0.19 tolerated(0.28) benign(0.241) TCGA-44-3918-01 11 6817018 6817018 C A OR6A2 5'UTR 0.25 TCGA-44-3918-01 11 7441832 7441832 G T SYT9 Missense_Mutation p.R478L 0.15 deleterious(0) probably_damaging(0.997) TCGA-44-3918-01 11 75718610 75718610 C T UVRAG Missense_Mutation p.T315I 0.29 deleterious(0.01) probably_damaging(0.946) TCGA-44-3918-01 11 76370954 76370954 G T LRRC32 Silent p.T561T 0.11 TCGA-44-3918-01 11 76507338 76507338 G A TSKU Silent p.A226A 0.21 TCGA-44-3918-01 11 76996134 76996134 C A GDPD4 Missense_Mutation p.D17Y 0.19 deleterious(0) probably_damaging(0.96) TCGA-44-3918-01 11 77825338 77825338 G C ALG8 Missense_Mutation p.S216C 0.21 tolerated(0.17) benign(0.209) TCGA-44-3918-01 11 7982253 7982253 G A NLRP10 Silent p.P302P 0.10 TCGA-44-3918-01 11 7982257 7982257 T C NLRP10 Missense_Mutation p.E301G 0.11 tolerated(0.15) benign(0.009) TCGA-44-3918-01 11 83170832 83170832 C T DLG2 3'UTR 0.18 TCGA-44-3918-01 11 8707067 8707067 A T RPL27A Intron 0.21 TCGA-44-3918-01 11 88924513 88924513 C A TYR Nonsense_Mutation p.C321* 0.12 TCGA-44-3918-01 11 92085508 92085508 G T FAT3 Missense_Mutation p.W77L 0.09 benign(0.009) TCGA-44-3918-01 11 9225561 9225561 C A DENND5A Missense_Mutation p.D199Y 0.10 deleterious(0) probably_damaging(1) TCGA-44-3918-01 11 92533122 92533122 G T FAT3 Missense_Mutation p.D2315Y 0.15 probably_damaging(1) TCGA-44-3918-01 11 92616436 92616436 C T FAT3 Missense_Mutation p.R4272C 0.35 possibly_damaging(0.677) TCGA-44-3918-01 11 94040589 94040589 G - FOLR4 Splice_Site p.X155_splice 0.10 TCGA-44-3918-01 11 9450370 9450370 G T IPO7 Intron 0.12 TCGA-44-3918-01 12 10147844 10147844 T A CLEC1B Missense_Mutation p.E147V 0.10 deleterious(0.01) benign(0.336) TCGA-44-3918-01 12 104496743 104496743 G A HCFC2 Missense_Mutation p.E691K 0.14 deleterious(0) probably_damaging(0.931) TCGA-44-3918-01 12 108641767 108641767 G C WSCD2 Splice_Site p.X449_splice 0.10 TCGA-44-3918-01 12 108962736 108962736 C T ISCU 3'UTR 0.25 TCGA-44-3918-01 12 109042473 109042473 C A CORO1C Missense_Mutation p.V405F 0.08 tolerated(0.59) benign(0.321) TCGA-44-3918-01 12 111291371 111291371 A T CCDC63 Missense_Mutation p.S58C 0.06 deleterious(0.04) possibly_damaging(0.789) TCGA-44-3918-01 12 11183830 11183830 C A TAS2R31 Silent p.R35R 0.15 TCGA-44-3918-01 12 112167688 112167688 A T ACAD10 Missense_Mutation p.E472V 0.08 deleterious(0.04) probably_damaging(0.994) TCGA-44-3918-01 12 113836547 113836547 T G SDS Missense_Mutation p.K100Q 0.09 tolerated(0.64) benign(0.001) TCGA-44-3918-01 12 116434322 116434322 C A MED13L Silent p.L985L 0.29 TCGA-44-3918-01 12 130841624 130841624 G C PIWIL1 Missense_Mutation p.M522I 0.29 deleterious(0.04) benign(0.008) TCGA-44-3918-01 12 132406036 132406055 ACAGTCAGCCTGCCGGCCTC - ULK1 3'UTR 0.16 TCGA-44-3918-01 12 132624412 132624412 T C DDX51 Silent p.K611K 0.22 TCGA-44-3918-01 12 133768117 133768117 G T ZNF268 Nonsense_Mutation p.E93* 0.20 TCGA-44-3918-01 12 13719990 13719990 C A GRIN2B Missense_Mutation p.G856V 0.46 deleterious(0) probably_damaging(1) TCGA-44-3918-01 12 22078928 22078928 C A ABCC9 Silent p.S118S 0.11 TCGA-44-3918-01 12 2786312 2786312 C A CACNA1C Nonsense_Mutation p.Y1675* 0.30 TCGA-44-3918-01 12 29617594 29617594 G T OVCH1 Missense_Mutation p.N657K 0.07 tolerated(0.11) benign(0.069) TCGA-44-3918-01 12 29648245 29648245 G T OVCH1 Missense_Mutation p.L143M 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-44-3918-01 12 32137492 32137492 G T KIAA1551 Missense_Mutation p.E1201D 0.06 tolerated(0.08) benign(0.148) TCGA-44-3918-01 12 32955375 32955375 C T PKP2 Missense_Mutation p.R754K 0.13 tolerated(0.09) probably_damaging(0.997) TCGA-44-3918-01 12 33559893 33559893 G T SYT10 Missense_Mutation p.P303H 0.27 deleterious(0.01) probably_damaging(0.989) TCGA-44-3918-01 12 34175689 34175689 A T ALG10 Missense_Mutation p.H52L 0.08 tolerated(0.11) benign(0.003) TCGA-44-3918-01 12 34177036 34177036 G C ALG10 Missense_Mutation p.S104T 0.08 tolerated(0.2) benign(0.224) TCGA-44-3918-01 12 45742320 45742320 G T ANO6 Missense_Mutation p.R239L 0.23 deleterious(0) probably_damaging(0.937) TCGA-44-3918-01 12 48188652 48188652 G A HDAC7 Missense_Mutation p.T450I 0.21 tolerated(0.08) possibly_damaging(0.735) TCGA-44-3918-01 12 49361930 49361930 G A WNT10B Silent p.G170G 0.09 TCGA-44-3918-01 12 49579227 49579227 G A TUBA1A Missense_Mutation p.R308C 0.10 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-44-3918-01 12 49724561 49724561 G C TROAP Missense_Mutation p.E645Q 0.16 tolerated(0.21) benign(0.299) TCGA-44-3918-01 12 52994912 52994912 G T KRT72 Missense_Mutation p.P109T 0.12 deleterious(0) possibly_damaging(0.791) TCGA-44-3918-01 12 53232851 53232851 G T KRT78 3'UTR 0.08 TCGA-44-3918-01 12 53876886 53876886 G A MAP3K12 Silent p.P567P 0.30 TCGA-44-3918-01 12 56385939 56385939 G T RAB5B Silent p.R197R 0.06 TCGA-44-3918-01 12 57178691 57178691 C G HSD17B6 Missense_Mutation p.F209L 0.07 deleterious(0) benign(0.32) TCGA-44-3918-01 12 57351015 57351015 C A RDH16 Nonsense_Mutation p.E78* 0.06 TCGA-44-3918-01 12 57432685 57432685 G A MYO1A Missense_Mutation p.H481Y 0.06 tolerated(0.06) benign(0.11) TCGA-44-3918-01 12 57589477 57589477 G T LRP1 Missense_Mutation p.C2825F 0.19 probably_damaging(0.975) TCGA-44-3918-01 12 57589478 57589478 C G LRP1 Missense_Mutation p.C2825W 0.19 probably_damaging(0.992) TCGA-44-3918-01 12 57865862 57865862 C A GLI1 3'UTR 0.14 TCGA-44-3918-01 12 58121759 58121759 G A AGAP2 Silent p.I909I 0.09 TCGA-44-3918-01 12 62104171 62104171 C A FAM19A2 3'UTR 0.22 TCGA-44-3918-01 12 64519834 64519834 G T SRGAP1 Missense_Mutation p.A768S 0.06 tolerated(0.3) benign(0.17) TCGA-44-3918-01 12 6715610 6715610 C A CHD4 5'UTR 0.21 TCGA-44-3918-01 12 7083817 7083817 G A EMG1 Missense_Mutation p.R124Q 0.10 deleterious(0) TCGA-44-3918-01 12 71946859 71946859 G T LGR5 Silent p.L145L 0.10 TCGA-44-3918-01 12 77419548 77419548 C A E2F7 Missense_Mutation p.L785F 0.13 deleterious(0.01) possibly_damaging(0.779) TCGA-44-3918-01 12 78444860 78444860 G T NAV3 Missense_Mutation p.V817L 0.10 tolerated(0.39) benign(0.108) TCGA-44-3918-01 12 8050907 8050907 A T NANOGP1 RNA 0.35 TCGA-44-3918-01 12 81688774 81688774 C A PPFIA2 Missense_Mutation p.R922L 0.25 deleterious(0.02) possibly_damaging(0.627) TCGA-44-3918-01 12 88379804 88379804 T A C12orf50 Nonsense_Mutation p.K317* 0.09 TCGA-44-3918-01 12 91348265 91348265 C A CCER1 Missense_Mutation p.W85C 0.26 deleterious(0.02) probably_damaging(0.95) TCGA-44-3918-01 12 94642069 94642069 G A PLXNC1 Missense_Mutation p.G887R 0.42 tolerated(0.47) benign(0.001) TCGA-44-3918-01 13 100425245 100425245 G T CLYBL Missense_Mutation p.G77V 0.13 deleterious(0) probably_damaging(0.997) TCGA-44-3918-01 13 101714425 101714425 C A NALCN Silent p.L1550L 0.13 TCGA-44-3918-01 13 102521158 102521158 C A FGF14 Missense_Mutation p.V114L 0.19 tolerated(0.12) possibly_damaging(0.609) TCGA-44-3918-01 13 103301782 103301782 A T TPP2 Silent p.G966G 0.10 TCGA-44-3918-01 13 103301784 103301784 G T TPP2 Missense_Mutation p.C967F 0.07 tolerated(0.36) benign(0.135) TCGA-44-3918-01 13 110814762 110814762 C A COL4A1 Missense_Mutation p.G1426V 0.07 unknown(0) TCGA-44-3918-01 13 110829281 110829281 C T COL4A1 Silent p.K940K 0.25 TCGA-44-3918-01 13 111092175 111092175 C T COL4A2 Nonsense_Mutation p.Q318* 0.27 TCGA-44-3918-01 13 111367733 111367733 G T ING1 5'UTR 0.23 TCGA-44-3918-01 13 111367734 111367734 G T ING1 5'UTR 0.22 TCGA-44-3918-01 13 21171206 21171206 A T IFT88 Missense_Mutation p.Q190L 0.13 tolerated(1) benign(0.006) TCGA-44-3918-01 13 23909848 23909848 C A SACS Missense_Mutation p.V2723F 0.08 probably_damaging(0.998) TCGA-44-3918-01 13 28155856 28155856 T G LNX2 5'UTR 0.15 TCGA-44-3918-01 13 29599270 29599270 C A MTUS2 Missense_Mutation p.D155E 0.09 tolerated(1) benign(0.001) TCGA-44-3918-01 13 31221140 31221140 G T USPL1 Missense_Mutation p.G395V 0.17 deleterious(0) probably_damaging(0.998) TCGA-44-3918-01 13 43918817 43918817 C G ENOX1 Missense_Mutation p.R298P 0.14 deleterious(0) probably_damaging(0.968) TCGA-44-3918-01 13 43935509 43935509 G T ENOX1 Silent p.G96G 0.09 TCGA-44-3918-01 13 51957561 51957561 C A INTS6 Missense_Mutation p.G362C 0.13 tolerated(0.06) probably_damaging(0.985) TCGA-44-3918-01 13 53624276 53624276 G C OLFM4 Missense_Mutation p.E301D 0.21 tolerated(0.74) benign(0.139) TCGA-44-3918-01 13 58298952 58298952 G T PCDH17 Nonsense_Mutation p.G1002* 0.12 TCGA-44-3918-01 13 61057959 61057959 G T TDRD3 Silent p.P182P 0.16 TCGA-44-3918-01 13 70514351 70514351 C A KLHL1 Nonsense_Mutation p.E279* 0.11 TCGA-44-3918-01 13 70681381 70681381 C A KLHL1 Nonsense_Mutation p.E151* 0.09 TCGA-44-3918-01 13 84455652 84455652 G T SLITRK1 5'UTR 0.06 TCGA-44-3918-01 13 88328566 88328566 C A SLITRK5 Missense_Mutation p.T308N 0.14 tolerated(0.1) possibly_damaging(0.677) TCGA-44-3918-01 13 99462534 99462534 C A DOCK9 Missense_Mutation p.M1714I 0.10 deleterious(0.02) benign(0.007) TCGA-44-3918-01 14 100165801 100165801 A G CYP46A1 Splice_Site p.X95_splice 0.27 TCGA-44-3918-01 14 101200978 101200978 C A DLK1 Silent p.L299L 0.09 TCGA-44-3918-01 14 102493773 102493773 G C DYNC1H1 Missense_Mutation p.L2980F 0.05 probably_damaging(0.992) TCGA-44-3918-01 14 106866534 106866534 T A IGHV3-38 Missense_Mutation p.S74C 0.07 deleterious_low_confidence(0) possibly_damaging(0.837) TCGA-44-3918-01 14 19566082 19566082 G A POTEG Missense_Mutation p.E376K 0.06 deleterious(0.01) benign(0.033) TCGA-44-3918-01 14 20404138 20404138 C A OR4K1 Missense_Mutation p.H105N 0.05 deleterious(0) probably_damaging(0.996) TCGA-44-3918-01 14 20404584 20404584 T - OR4K1 Frame_Shift_Del p.C254Afs*29 0.07 TCGA-44-3918-01 14 20528475 20528475 C A OR4L1 Missense_Mutation p.T91N 0.26 deleterious(0) possibly_damaging(0.495) TCGA-44-3918-01 14 20586564 20586564 G T OR4K17 Missense_Mutation p.W333C 0.14 tolerated(0.2) benign(0.002) TCGA-44-3918-01 14 20978889 20978889 G T RNASE10 Missense_Mutation p.G87C 0.24 deleterious(0.04) possibly_damaging(0.54) TCGA-44-3918-01 14 20978890 20978890 G T RNASE10 Missense_Mutation p.G87V 0.24 deleterious(0.04) benign(0.046) TCGA-44-3918-01 14 21216183 21216183 G C EDDM3A Nonstop_Mutation p.*148Yext*89 0.08 TCGA-44-3918-01 14 21679518 21679518 T A HNRNPC Intron 0.15 TCGA-44-3918-01 14 21868189 21868189 C A CHD8 Nonsense_Mutation p.E1590* 0.26 TCGA-44-3918-01 14 22509307 22509307 G T TRAV20 Missense_Mutation p.R82M 0.14 deleterious(0) probably_damaging(0.992) TCGA-44-3918-01 14 23859650 23859650 G C MYH6 Silent p.R1116R 0.25 TCGA-44-3918-01 14 24546478 24546478 G C CPNE6 Missense_Mutation p.G472A 0.16 deleterious(0) probably_damaging(1) TCGA-44-3918-01 14 24701538 24701538 C T NEDD8 5'UTR 0.10 TCGA-44-3918-01 14 24845994 24845994 G T NFATC4 Nonsense_Mutation p.E914* 0.31 TCGA-44-3918-01 14 25042889 25042889 G C CTSG Missense_Mutation p.T241R 0.08 deleterious(0) probably_damaging(0.989) TCGA-44-3918-01 14 29237763 29237763 G T FOXG1 Missense_Mutation p.M426I 0.10 deleterious_low_confidence(0.02) benign(0.125) TCGA-44-3918-01 14 30046644 30046644 C A PRKD1 Missense_Mutation p.D847Y 0.06 deleterious(0) probably_damaging(0.999) TCGA-44-3918-01 14 35243654 35243654 C G BAZ1A Missense_Mutation p.R959T 0.09 deleterious(0.05) possibly_damaging(0.879) TCGA-44-3918-01 14 39796221 39796221 C T CTAGE5 Missense_Mutation p.P614L 0.16 tolerated(0.06) benign(0.249) TCGA-44-3918-01 14 42356854 42356854 T A LRFN5 Silent p.L342L 0.15 TCGA-44-3918-01 14 45645702 45645702 A G FANCM Missense_Mutation p.T1249A 0.18 tolerated(1) benign(0) TCGA-44-3918-01 14 45658239 45658239 G A FANCM Missense_Mutation p.D1672N 0.29 deleterious(0) possibly_damaging(0.776) TCGA-44-3918-01 14 51099082 51099082 C A ATL1 3'UTR 0.25 TCGA-44-3918-01 14 51446110 51446110 C A TRIM9 Missense_Mutation p.V689L 0.14 deleterious(0.01) probably_damaging(0.916) TCGA-44-3918-01 14 52735269 52735269 C A PTGDR Missense_Mutation p.P246Q 0.08 tolerated(0.05) probably_damaging(0.933) TCGA-44-3918-01 14 65260272 65260272 C A SPTB Missense_Mutation p.M703I 0.16 tolerated(0.2) benign(0.012) TCGA-44-3918-01 14 67859505 67859505 C T PLEK2 Silent p.V181V 0.15 TCGA-44-3918-01 14 69520616 69520616 T A DCAF5 Silent p.T929T 0.22 TCGA-44-3918-01 14 69800212 69800212 A T GALNT16 Splice_Site p.X288_splice 0.26 TCGA-44-3918-01 14 70175482 70175482 G T KIAA0247 Missense_Mutation p.G183C 0.06 deleterious(0) probably_damaging(1) TCGA-44-3918-01 14 70713003 70713003 G C ADAM21P1 RNA 0.17 TCGA-44-3918-01 14 71058048 71058048 G A MED6 Nonsense_Mutation p.Q173* 0.07 TCGA-44-3918-01 14 76905914 76905914 G T ESRRB Missense_Mutation p.R73L 0.21 tolerated(0.29) benign(0.001) TCGA-44-3918-01 14 77270204 77270204 C A ANGEL1 Missense_Mutation p.A478S 0.27 tolerated(0.12) benign(0.151) TCGA-44-3918-01 14 77880278 77880278 C A NOXRED1 Silent p.L116L 0.24 TCGA-44-3918-01 14 80669444 80669444 G T DIO2 Missense_Mutation p.T173K 0.15 deleterious(0) benign(0.323) TCGA-44-3918-01 14 81244364 81244364 C A CEP128 Missense_Mutation p.M746I 0.09 tolerated(0.4) benign(0.001) TCGA-44-3918-01 14 81609497 81609497 T - TSHR Frame_Shift_Del p.F366Lfs*46 0.14 TCGA-44-3918-01 14 88652099 88652099 G A KCNK10 Missense_Mutation p.P471L 0.11 deleterious_low_confidence(0.02) benign(0.035) TCGA-44-3918-01 14 94069601 94069601 G T UNC79 Missense_Mutation p.R1020S 0.12 tolerated(0.09) probably_damaging(0.995) TCGA-44-3918-01 14 94088826 94088826 C A UNC79 Silent p.L1572L 0.12 TCGA-44-3918-01 14 94545842 94545842 C A DDX24 Nonsense_Mutation p.E83* 0.14 TCGA-44-3918-01 14 94914725 94914725 G T SERPINA11 Silent p.P129P 0.09 TCGA-44-3918-01 14 94962858 94962858 C A SERPINA12 Missense_Mutation p.D253Y 0.17 deleterious(0.01) probably_damaging(0.976) TCGA-44-3918-01 14 95109913 95109913 C T SERPINA13P RNA 0.11 TCGA-44-3918-01 14 97022712 97022712 C T PAPOLA Missense_Mutation p.H656Y 0.08 tolerated(1) benign(0) TCGA-44-3918-01 15 101170046 101170046 A T ASB7 Missense_Mutation p.T206S 0.25 tolerated(0.06) benign(0.15) TCGA-44-3918-01 15 20170187 20170187 C G IGHV1OR15-9 Missense_Mutation p.E29Q 0.18 deleterious(0.02) possibly_damaging(0.464) TCGA-44-3918-01 15 22849092 22849092 C T TUBGCP5 Missense_Mutation p.A380V 0.17 tolerated(0.23) benign(0.064) TCGA-44-3918-01 15 25438402 25438402 C T SNORD115-11 3'Flank 0.09 TCGA-44-3918-01 15 25463694 25463694 T G SNORD115-27 5'Flank 0.20 TCGA-44-3918-01 15 34078116 34078116 C A RYR3 Silent p.G3174G 0.26 TCGA-44-3918-01 15 40708319 40708319 G A IVD Missense_Mutation p.A338T 0.17 deleterious(0.03) benign(0.085) TCGA-44-3918-01 15 42049986 42049986 G T MGA Silent p.P2380P 0.19 TCGA-44-3918-01 15 43939636 43939636 C A CATSPER2 Nonsense_Mutation p.G59* 0.20 TCGA-44-3918-01 15 45389466 45389466 T A DUOX2 Missense_Mutation p.S1273C 0.10 deleterious(0.02) benign(0.023) TCGA-44-3918-01 15 64404771 64404771 G T SNX1 Splice_Site p.X54_splice 0.09 TCGA-44-3918-01 15 65678331 65678331 C T IGDCC4 Silent p.R1006R 0.19 TCGA-44-3918-01 15 66855910 66855910 G A LCTL Missense_Mutation p.L142F 0.17 deleterious(0) probably_damaging(1) TCGA-44-3918-01 15 66855911 66855911 G T LCTL Silent p.A141A 0.17 TCGA-44-3918-01 15 68378695 68378695 G T PIAS1 Missense_Mutation p.A26S 0.29 deleterious(0) probably_damaging(0.992) TCGA-44-3918-01 15 75562442 75562442 G A GOLGA6C Missense_Mutation p.V662M 0.11 tolerated(0.17) benign(0.032) TCGA-44-3918-01 15 79057034 79057034 C A ADAMTS7 Missense_Mutation p.G1428C 0.18 deleterious(0) probably_damaging(0.994) TCGA-44-3918-01 15 82336558 82336558 C A MEX3B Missense_Mutation p.R218L 0.14 deleterious(0) probably_damaging(0.974) TCGA-44-3918-01 15 83395251 83395251 C T AC105339.2 3'Flank 0.27 TCGA-44-3918-01 15 84566611 84566611 G T ADAMTSL3 Missense_Mutation p.C490F 0.09 deleterious(0) probably_damaging(1) TCGA-44-3918-01 15 88476269 88476269 C A NTRK3 Missense_Mutation p.K621N 0.16 deleterious(0) probably_damaging(0.978) TCGA-44-3918-01 16 1128926 1128926 G T SSTR5 Missense_Mutation p.A20S 0.18 tolerated(0.69) benign(0) TCGA-44-3918-01 16 1143871 1143871 G T C1QTNF8 Missense_Mutation p.S130Y 0.20 tolerated(0.06) possibly_damaging(0.5) TCGA-44-3918-01 16 1255228 1255228 C A CACNA1H Missense_Mutation p.P856T 0.09 deleterious(0) probably_damaging(0.932) TCGA-44-3918-01 16 15831439 15831439 C A MYH11 Nonsense_Mutation p.E1061* 0.13 TCGA-44-3918-01 16 2049685 2049685 G A ZNF598 Missense_Mutation p.A622V 0.11 benign(0.005) TCGA-44-3918-01 16 20497976 20497976 G A ACSM2A Missense_Mutation p.M570I 0.16 tolerated(0.18) benign(0.053) TCGA-44-3918-01 16 21994458 21994459 - T UQCRC2 Frame_Shift_Ins p.L444Ffs*8 0.30 TCGA-44-3918-01 16 23119414 23119414 C T USP31 Missense_Mutation p.E242K 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-44-3918-01 16 24580457 24580457 G A RBBP6 Missense_Mutation p.V816I 0.23 deleterious_low_confidence(0) unknown(0) TCGA-44-3918-01 16 27802640 27802640 G T GSG1L 3'UTR 0.50 TCGA-44-3918-01 16 3119312 3119312 G T IL32 Nonsense_Mutation p.E175* 0.09 TCGA-44-3918-01 16 32077595 32077595 C A IGHV3OR16-9 Silent p.I70I 0.10 TCGA-44-3918-01 16 33647271 33647271 G - RP11-812E19.9 Frame_Shift_Del p.T110Rfs*7 0.18 TCGA-44-3918-01 16 49525138 49525138 G T ZNF423 3'UTR 0.19 TCGA-44-3918-01 16 49670403 49670403 C A ZNF423 Missense_Mutation p.G887V 0.26 tolerated(0.08) benign(0.211) TCGA-44-3918-01 16 49671148 49671148 G A ZNF423 Missense_Mutation p.L639F 0.11 tolerated(0.19) possibly_damaging(0.889) TCGA-44-3918-01 16 55530894 55530894 C T MMP2 Missense_Mutation p.A510V 0.11 deleterious(0.01) possibly_damaging(0.892) TCGA-44-3918-01 16 57392777 57392777 G A CCL22 Missense_Mutation p.V17M 0.13 tolerated(0.23) unknown(0) TCGA-44-3918-01 16 58314359 58314359 G T PRSS54 Silent p.T319T 0.21 TCGA-44-3918-01 16 614007 614007 C A C16orf11 Nonsense_Mutation p.S238* 0.24 TCGA-44-3918-01 16 66436898 66436898 G T CDH5 Silent p.T727T 0.25 TCGA-44-3918-01 16 67154014 67154014 G T C16orf70 Splice_Site p.X22_splice 0.43 TCGA-44-3918-01 16 67654636 67654636 G A CTCF Missense_Mutation p.G375R 0.15 deleterious(0) probably_damaging(1) TCGA-44-3918-01 16 67680346 67680346 C A RLTPR Missense_Mutation p.P131H 0.18 tolerated(0.35) benign(0.401) TCGA-44-3918-01 16 67860159 67860159 C A TSNAXIP1 Silent p.R363R 0.13 TCGA-44-3918-01 16 70934909 70934909 C A HYDIN Nonsense_Mutation p.E3016* 0.06 TCGA-44-3918-01 16 70935048 70935048 C G HYDIN Silent p.R2969R 0.09 TCGA-44-3918-01 16 81391423 81391423 A G GAN Missense_Mutation p.K287R 0.16 tolerated(0.15) benign(0.002) TCGA-44-3918-01 16 81925131 81925131 G T PLCG2 Missense_Mutation p.A308S 0.19 tolerated(0.67) benign(0.002) TCGA-44-3918-01 16 81925132 81925132 C G PLCG2 Missense_Mutation p.A308G 0.24 tolerated(0.34) benign(0.074) TCGA-44-3918-01 16 81925133 81925133 G C PLCG2 Silent p.A308A 0.23 TCGA-44-3918-01 16 90025465 90025465 A T DEF8 Missense_Mutation p.H200L 0.24 deleterious(0) probably_damaging(1) TCGA-44-3918-01 16 90028432 90028432 A T DEF8 Missense_Mutation p.S335C 0.10 deleterious(0.03) probably_damaging(0.945) TCGA-44-3918-01 17 10219042 10219042 C A MYH13 Nonsense_Mutation p.E1318* 0.52 TCGA-44-3918-01 17 10303891 10303891 G T MYH8 Missense_Mutation p.A1184D 0.27 deleterious(0.02) possibly_damaging(0.551) TCGA-44-3918-01 17 11786980 11786980 C A DNAH9 Silent p.S3628S 0.13 TCGA-44-3918-01 17 12656507 12656507 C A MYOCD Silent p.S634S 0.23 TCGA-44-3918-01 17 12862139 12862139 G T ARHGAP44 Missense_Mutation p.R483L 0.12 deleterious(0) benign(0.168) TCGA-44-3918-01 17 1479966 1479966 G A SLC43A2 Silent p.I491I 0.10 TCGA-44-3918-01 17 19235338 19235338 G T EPN2 Missense_Mutation p.R528S 0.14 tolerated(0.09) benign(0.097) TCGA-44-3918-01 17 26086004 26086004 C G NOS2 Missense_Mutation p.R1086P 0.12 tolerated(0.09) probably_damaging(0.948) TCGA-44-3918-01 17 26874688 26874688 C A UNC119 Intron 0.29 TCGA-44-3918-01 17 27893424 27893424 G T ABHD15 Nonsense_Mutation p.Y187* 0.13 TCGA-44-3918-01 17 28434942 28434942 T C EFCAB5 Missense_Mutation p.I1471T 0.12 deleterious(0) possibly_damaging(0.466) TCGA-44-3918-01 17 29557278 29557278 G T NF1 Missense_Mutation p.R997S 0.12 deleterious(0) probably_damaging(0.942) TCGA-44-3918-01 17 29631301 29631301 G T EVI2B Missense_Mutation p.P443T 0.12 deleterious(0) probably_damaging(0.958) TCGA-44-3918-01 17 35300290 35300290 G T LHX1 Silent p.L361L 0.21 TCGA-44-3918-01 17 36485601 36485601 C T GPR179 Missense_Mutation p.G1284D 0.13 tolerated(1) benign(0.002) TCGA-44-3918-01 17 39406098 39406098 C A KRTAP9-4 Nonsense_Mutation p.C42* 0.27 TCGA-44-3918-01 17 3954271 3954271 C G ZZEF1 Missense_Mutation p.R1889S 0.27 tolerated(0.12) benign(0.367) TCGA-44-3918-01 17 39633777 39633777 C A KRT35 Missense_Mutation p.D405Y 0.29 deleterious(0) probably_damaging(0.961) TCGA-44-3918-01 17 39633778 39633778 C A KRT35 Missense_Mutation p.E404D 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-44-3918-01 17 39998215 39998215 T A KLHL10 Missense_Mutation p.L112Q 0.15 deleterious(0) probably_damaging(0.998) TCGA-44-3918-01 17 42337251 42337251 T G SLC4A1 Missense_Mutation p.T179P 0.38 tolerated(0.12) benign(0.008) TCGA-44-3918-01 17 42337252 42337252 C T SLC4A1 Silent p.L178L 0.35 TCGA-44-3918-01 17 42930912 42930912 C G EFTUD2 Missense_Mutation p.R813S 0.09 deleterious(0) probably_damaging(1) TCGA-44-3918-01 17 44788372 44788372 A C NSF Missense_Mutation p.N505T 0.09 tolerated(0.1) benign(0.05) TCGA-44-3918-01 17 45360745 45360745 G C ITGB3 Missense_Mutation p.C64S 0.26 deleterious(0) probably_damaging(1) TCGA-44-3918-01 17 47236504 47236504 C A B4GALNT2 Silent p.R262R 0.08 TCGA-44-3918-01 17 47783252 47783252 C A SLC35B1 Missense_Mutation p.G116C 0.15 deleterious(0) probably_damaging(1) TCGA-44-3918-01 17 48153965 48153965 G T ITGA3 Missense_Mutation p.E614D 0.17 tolerated(0.26) possibly_damaging(0.872) TCGA-44-3918-01 17 48272948 48272948 C A COL1A1 Missense_Mutation p.A379S 0.41 unknown(0) TCGA-44-3918-01 17 48655739 48655739 C A CACNA1G Silent p.L705L 0.13 TCGA-44-3918-01 17 56621194 56621194 G T C17orf47 Missense_Mutation p.S118R 0.40 tolerated(0.25) possibly_damaging(0.883) TCGA-44-3918-01 17 57279141 57279141 G T PRR11 3'UTR 0.53 TCGA-44-3918-01 17 61776059 61776059 G T LIMD2 Nonsense_Mutation p.Y79* 0.09 TCGA-44-3918-01 17 64873633 64873633 C A CACNG5 Silent p.V61V 0.31 TCGA-44-3918-01 17 65040956 65040956 C A CACNG1 Silent p.R60R 0.09 TCGA-44-3918-01 17 65146102 65146102 C A HELZ Splice_Site p.X786_splice 0.25 TCGA-44-3918-01 17 67181702 67181702 C A ABCA10 Nonsense_Mutation p.E805* 0.12 TCGA-44-3918-01 17 6902727 6902727 G A ALOX12 Missense_Mutation p.R250K 0.15 tolerated(0.47) benign(0.431) TCGA-44-3918-01 17 6978391 6978391 G T CLEC10A Silent p.T311T 0.24 TCGA-44-3918-01 17 74014575 74014575 C A EVPL Missense_Mutation p.C464F 0.26 deleterious(0) possibly_damaging(0.646) TCGA-44-3918-01 17 7405852 7405852 G T POLR2A Missense_Mutation p.R863L 0.11 probably_damaging(0.998) TCGA-44-3918-01 17 7405853 7405853 G T POLR2A Silent p.R863R 0.11 TCGA-44-3918-01 17 74398726 74398726 C T UBE2O Missense_Mutation p.D215N 0.12 deleterious(0.03) probably_damaging(0.99) TCGA-44-3918-01 17 74738050 74738050 G T MFSD11 Splice_Site p.X87_splice 0.11 TCGA-44-3918-01 17 74944851 74944851 G T MGAT5B Missense_Mutation p.K779N 0.27 tolerated(0.16) probably_damaging(0.984) TCGA-44-3918-01 17 7576928 7576928 T C TP53 Splice_Site p.X307_splice 0.29 TCGA-44-3918-01 17 76481769 76481769 C A DNAH17 Missense_Mutation p.W2435L 0.07 benign(0.001) TCGA-44-3918-01 17 76993512 76993512 C A CANT1 Missense_Mutation p.A65S 0.10 tolerated(0.89) benign(0.002) TCGA-44-3918-01 17 77081425 77081425 G A ENGASE Splice_Site p.X567_splice 0.12 TCGA-44-3918-01 17 80045115 80045115 C A FASN Missense_Mutation p.V1080L 0.42 tolerated(0.2) benign(0.005) TCGA-44-3918-01 18 14757826 14757826 G T ANKRD30B Missense_Mutation p.M210I 0.09 tolerated(0.44) benign(0.025) TCGA-44-3918-01 18 18690946 18690946 T A ROCK1 5'UTR 0.16 TCGA-44-3918-01 18 22804827 22804827 C A ZNF521 Missense_Mutation p.G1019C 0.17 deleterious(0) probably_damaging(1) TCGA-44-3918-01 18 22805773 22805773 G A ZNF521 Silent p.F703F 0.06 TCGA-44-3918-01 18 22805845 22805845 C A ZNF521 Missense_Mutation p.L679F 0.13 tolerated(0.09) possibly_damaging(0.78) TCGA-44-3918-01 18 28610993 28610993 G T DSC3 Missense_Mutation p.D100E 0.10 deleterious(0.01) possibly_damaging(0.755) TCGA-44-3918-01 18 28934808 28934808 G T DSG1 Missense_Mutation p.M883I 0.18 tolerated(1) benign(0.001) TCGA-44-3918-01 18 33283564 33283564 G T GALNT1 Missense_Mutation p.C497F 0.30 deleterious(0) probably_damaging(1) TCGA-44-3918-01 18 34205545 34205545 G T FHOD3 Missense_Mutation p.R343S 0.11 deleterious(0.02) benign(0.318) TCGA-44-3918-01 18 42531802 42531802 A T SETBP1 Nonsense_Mutation p.R833* 0.11 TCGA-44-3918-01 18 43664302 43664302 T C ATP5A1 Silent p.S536S 0.21 TCGA-44-3918-01 18 44561593 44561593 G T TCEB3B Missense_Mutation p.Q15K 0.10 deleterious(0.01) possibly_damaging(0.535) TCGA-44-3918-01 18 52942961 52942961 A T TCF4 Silent p.P328P 0.08 TCGA-44-3918-01 18 55020225 55020225 C A ST8SIA3 Missense_Mutation p.P50T 0.14 benign(0.399) TCGA-44-3918-01 18 56184357 56184357 C A ALPK2 Missense_Mutation p.S1908I 0.23 deleterious(0) probably_damaging(0.921) TCGA-44-3918-01 18 56586482 56586482 C T ZNF532 Silent p.I321I 0.17 TCGA-44-3918-01 18 59157724 59157724 G T CDH20 5'UTR 0.16 TCGA-44-3918-01 18 61226923 61226923 A T SERPINB12 Missense_Mutation p.Y119F 0.23 tolerated(0.14) possibly_damaging(0.812) TCGA-44-3918-01 18 67344967 67344967 C T DOK6 Intron 0.09 TCGA-44-3918-01 18 70451059 70451059 C A NETO1 Missense_Mutation p.S241I 0.13 deleterious(0) probably_damaging(0.943) TCGA-44-3918-01 18 9887023 9887023 C A TXNDC2 Missense_Mutation p.P183T 0.05 tolerated(0.14) possibly_damaging(0.625) TCGA-44-3918-01 18 9887024 9887024 C A TXNDC2 Missense_Mutation p.P183Q 0.05 deleterious(0.05) probably_damaging(0.94) TCGA-44-3918-01 19 10108083 10108083 G T COL5A3 Silent p.P409P 0.27 TCGA-44-3918-01 19 10449401 10449401 G A ICAM3 Silent p.C100C 0.14 TCGA-44-3918-01 19 11408976 11408976 G T TSPAN16 Missense_Mutation p.W76C 0.11 tolerated(0.51) benign(0.057) TCGA-44-3918-01 19 12060377 12060377 G A ZNF700 Missense_Mutation p.C513Y 0.17 deleterious(0.01) possibly_damaging(0.614) TCGA-44-3918-01 19 12939733 12939733 C A RTBDN Missense_Mutation p.E100D 0.08 tolerated(0.5) possibly_damaging(0.669) TCGA-44-3918-01 19 14073934 14073934 C G RFX1 Missense_Mutation p.E908D 0.12 tolerated(0.1) benign(0.034) TCGA-44-3918-01 19 14593722 14593722 C A GIPC1 Missense_Mutation p.G23C 0.29 tolerated_low_confidence(0.07) benign(0.237) TCGA-44-3918-01 19 15166299 15166299 T - CASP14 Frame_Shift_Del p.D193Efs*14 0.10 TCGA-44-3918-01 19 15580732 15580732 A T PGLYRP2 Missense_Mutation p.V451E 0.09 deleterious(0) probably_damaging(0.962) TCGA-44-3918-01 19 15769110 15769110 C A CYP4F3 Nonsense_Mutation p.C384* 0.14 TCGA-44-3918-01 19 15904977 15904977 T G OR10H5 Missense_Mutation p.L40R 0.31 tolerated(0.07) probably_damaging(0.966) TCGA-44-3918-01 19 16910888 16910888 C G NWD1 Silent p.L1217L 0.15 TCGA-44-3918-01 19 17444344 17444344 C A ANO8 Silent p.T79T 0.07 TCGA-44-3918-01 19 17476329 17476329 C A PLVAP Silent p.L315L 0.16 TCGA-44-3918-01 19 17611545 17611545 T A SLC27A1 Missense_Mutation p.L499Q 0.10 deleterious(0.02) probably_damaging(0.924) TCGA-44-3918-01 19 17955064 17955064 C A JAK3 Missense_Mutation p.V55L 0.38 deleterious(0.01) possibly_damaging(0.613) TCGA-44-3918-01 19 19427244 19427244 G A SUGP1 Missense_Mutation p.P65S 0.22 tolerated(0.34) benign(0.016) TCGA-44-3918-01 19 22363746 22363746 C T ZNF676 Missense_Mutation p.C258Y 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-44-3918-01 19 23414119 23414119 C A ZNF724P Missense_Mutation p.G59C 0.22 deleterious(0.02) probably_damaging(0.979) TCGA-44-3918-01 19 23545146 23545146 C A ZNF91 Missense_Mutation p.C212F 0.11 deleterious(0.01) probably_damaging(0.99) TCGA-44-3918-01 19 24097758 24097758 C G ZNF726 5'UTR 0.19 TCGA-44-3918-01 19 24102947 24102947 G T ZNF726 Intron 0.16 TCGA-44-3918-01 19 30498421 30498421 T G URI1 Missense_Mutation p.S188A 0.11 tolerated(0.17) benign(0.146) TCGA-44-3918-01 19 30934952 30934952 G T ZNF536 Silent p.P161P 0.08 TCGA-44-3918-01 19 31767851 31767851 G T TSHZ3 Missense_Mutation p.L950M 0.15 deleterious(0) possibly_damaging(0.776) TCGA-44-3918-01 19 31768047 31768047 C G TSHZ3 Missense_Mutation p.E884D 0.11 tolerated(0.29) benign(0.035) TCGA-44-3918-01 19 31769071 31769071 C G TSHZ3 Missense_Mutation p.S543T 0.18 tolerated(0.3) probably_damaging(0.991) TCGA-44-3918-01 19 33093033 33093033 C A ANKRD27 Splice_Site p.X886_splice 0.32 TCGA-44-3918-01 19 33392156 33392156 G A CEP89 Silent p.I576I 0.13 TCGA-44-3918-01 19 40832377 40832377 C A C19orf47 Silent p.R189R 0.16 TCGA-44-3918-01 19 41594903 41594903 C T CYP2A13 Missense_Mutation p.H84Y 0.16 tolerated(1) benign(0.011) TCGA-44-3918-01 19 42863308 42863308 G T MEGF8 Missense_Mutation p.G1734V 0.44 deleterious(0) probably_damaging(0.999) TCGA-44-3918-01 19 42863309 42863309 G T MEGF8 Silent p.G1734G 0.44 TCGA-44-3918-01 19 42880607 42880607 G T MEGF8 Missense_Mutation p.A2673S 0.32 tolerated(0.08) possibly_damaging(0.553) TCGA-44-3918-01 19 4400336 4400336 G A SH3GL1 Silent p.F10F 0.09 TCGA-44-3918-01 19 44933603 44933603 G A ZNF229 Silent p.H451H 0.14 TCGA-44-3918-01 19 46275986 46275986 T A DMPK Silent p.T429T 0.17 TCGA-44-3918-01 19 46319799 46319799 C T SYMPK Missense_Mutation p.E1099K 0.11 tolerated(0.08) benign(0.406) TCGA-44-3918-01 19 46857143 46857143 G T PPP5C Missense_Mutation p.R87L 0.11 deleterious(0.01) benign(0) TCGA-44-3918-01 19 46857144 46857144 G C PPP5C Silent p.R87R 0.12 TCGA-44-3918-01 19 48517467 48517467 G A ELSPBP1 Missense_Mutation p.G37E 0.14 deleterious(0.04) benign(0.307) TCGA-44-3918-01 19 48591944 48591944 T - PLA2G4C Frame_Shift_Del p.G274Vfs*22 0.25 TCGA-44-3918-01 19 48664733 48664733 A T LIG1 Missense_Mutation p.S47T 0.30 tolerated_low_confidence(0.13) benign(0.021) TCGA-44-3918-01 19 50154770 50154770 G T SCAF1 Missense_Mutation p.G375V 0.23 unknown(0) TCGA-44-3918-01 19 50193051 50193051 T G ADM5 5'UTR 0.25 TCGA-44-3918-01 19 51412000 51412000 G T KLK4 Silent p.R104R 0.22 TCGA-44-3918-01 19 51918651 51918651 C G SIGLEC10 Missense_Mutation p.E372Q 0.22 tolerated(0.05) possibly_damaging(0.702) TCGA-44-3918-01 19 53747151 53747151 C A ZNF677 Splice_Site p.X6_splice 0.19 TCGA-44-3918-01 19 54200784 54200784 G T MIR525 5'Flank 0.17 TCGA-44-3918-01 19 54410213 54410213 C T PRKCG 3'UTR 0.29 TCGA-44-3918-01 19 55329796 55329796 G T KIR3DL1 Missense_Mutation p.A33S 0.32 deleterious(0.02) probably_damaging(0.969) TCGA-44-3918-01 19 55450980 55450980 G T NLRP7 Missense_Mutation p.P403T 0.20 tolerated(0.3) benign(0.023) TCGA-44-3918-01 19 56160838 56160838 G T CCDC106 Missense_Mutation p.M67I 0.33 tolerated(1) benign(0.044) TCGA-44-3918-01 19 57640672 57640672 C A USP29 Missense_Mutation p.P210Q 0.23 tolerated(0.6) benign(0.017) TCGA-44-3918-01 19 57642509 57642509 C A USP29 Silent p.A822A 0.12 TCGA-44-3918-01 19 57646288 57646288 A G ZIM3 Nonstop_Mutation p.*473Qext*24 0.12 TCGA-44-3918-01 19 57648334 57648334 C T ZIM3 Missense_Mutation p.G50R 0.23 tolerated(0.54) benign(0) TCGA-44-3918-01 19 58213094 58213094 G T ZNF154 Missense_Mutation p.T408N 0.12 deleterious(0.02) probably_damaging(0.962) TCGA-44-3918-01 19 7975355 7975355 G T MAP2K7 Silent p.G155G 0.19 TCGA-44-3918-01 19 8176862 8176862 G A FBN3 Silent p.H1320H 0.14 TCGA-44-3918-01 19 8807935 8807935 G T ACTL9 Missense_Mutation p.Q373K 0.11 tolerated(0.95) benign(0.438) TCGA-44-3918-01 19 8842204 8842204 A T OR2Z1 Missense_Mutation p.N272Y 0.28 deleterious(0) probably_damaging(0.911) TCGA-44-3918-01 19 8922189 8922189 C A ZNF558 Missense_Mutation p.G326V 0.13 deleterious(0) probably_damaging(0.97) TCGA-44-3918-01 19 8922190 8922190 C A ZNF558 Missense_Mutation p.G326W 0.14 deleterious(0) probably_damaging(0.998) TCGA-44-3918-01 19 9061051 9061051 G T MUC16 Missense_Mutation p.Q8799K 0.24 unknown(0) TCGA-44-3918-01 19 9064316 9064316 G T MUC16 Silent p.I7710I 0.14 TCGA-44-3918-01 19 9064968 9064968 G T MUC16 Missense_Mutation p.S7493Y 0.06 unknown(0) TCGA-44-3918-01 19 9071983 9071983 C - MUC16 Frame_Shift_Del p.V5155Lfs*34 0.12 TCGA-44-3918-01 19 9084426 9084426 C A MUC16 Silent p.S2463S 0.19 TCGA-44-3918-01 19 9407298 9407298 C A ZNF699 Missense_Mutation p.S261I 0.23 tolerated(0.21) benign(0.11) TCGA-44-3918-01 19 9578134 9578134 A T ZNF560 Missense_Mutation p.F497I 0.10 deleterious(0) benign(0.445) TCGA-44-3918-01 1 107937801 107937801 G C NTNG1 Missense_Mutation p.V305L 0.09 tolerated(0.86) benign(0.01) TCGA-44-3918-01 1 109270669 109270669 C T FNDC7 Missense_Mutation p.P451S 0.11 tolerated(1) benign(0.001) TCGA-44-3918-01 1 11852386 11852386 T C MTHFR Silent p.Q527Q 0.10 TCGA-44-3918-01 1 120298156 120298156 G C HMGCS2 Missense_Mutation p.Q361E 0.05 tolerated(0.16) benign(0.126) TCGA-44-3918-01 1 120471800 120471800 G C NOTCH2 Missense_Mutation p.R1231G 0.14 tolerated(0.49) benign(0) TCGA-44-3918-01 1 12853516 12853516 G T PRAMEF1 Missense_Mutation p.R47I 0.10 deleterious(0) probably_damaging(0.985) TCGA-44-3918-01 1 146466101 146466101 G A NBPF12 Missense_Mutation p.G3326R 0.09 benign(0.009) TCGA-44-3918-01 1 151062961 151062961 G T GABPB2 Missense_Mutation p.S63I 0.05 deleterious(0.04) possibly_damaging(0.724) TCGA-44-3918-01 1 152080695 152080695 G T TCHH Missense_Mutation p.D1666E 0.49 unknown(0) TCGA-44-3918-01 1 152191479 152191479 G C HRNR Missense_Mutation p.H876D 0.05 unknown(0) TCGA-44-3918-01 1 152193740 152193740 C T HRNR Missense_Mutation p.R122Q 0.10 possibly_damaging(0.878) TCGA-44-3918-01 1 152278705 152278705 C A FLG Missense_Mutation p.R2886L 0.11 benign(0.331) TCGA-44-3918-01 1 152285627 152285627 C A FLG Missense_Mutation p.D579Y 0.07 probably_damaging(0.996) TCGA-44-3918-01 1 152286112 152286112 G C FLG Missense_Mutation p.S417C 0.16 probably_damaging(0.995) TCGA-44-3918-01 1 152328819 152328819 T C FLG2 Silent p.Q481Q 0.05 TCGA-44-3918-01 1 155264414 155264414 C G PKLR Missense_Mutation p.G275A 0.10 tolerated(0.11) probably_damaging(1) TCGA-44-3918-01 1 155269945 155269945 A T PKLR Missense_Mutation p.L76Q 0.31 deleterious(0) probably_damaging(1) TCGA-44-3918-01 1 155269946 155269946 G T PKLR Missense_Mutation p.L76M 0.31 deleterious(0.02) probably_damaging(1) TCGA-44-3918-01 1 1560537 1560537 C T MIB2 Silent p.F346F 0.09 TCGA-44-3918-01 1 156146368 156146368 C T SEMA4A Silent p.Y622Y 0.14 TCGA-44-3918-01 1 156640262 156640262 C A NES Nonsense_Mutation p.E1240* 0.28 TCGA-44-3918-01 1 157490914 157490914 G T FCRL5 Missense_Mutation p.A803E 0.12 deleterious(0.05) probably_damaging(0.978) TCGA-44-3918-01 1 157659676 157659676 A T FCRL3 Silent p.A574A 0.12 TCGA-44-3918-01 1 15788109 15788109 C A CELA2A Silent p.S61S 0.16 TCGA-44-3918-01 1 158435417 158435417 G A OR10K1 Silent p.R22R 0.17 TCGA-44-3918-01 1 158436249 158436249 G T OR10K1 Missense_Mutation p.A300S 0.16 deleterious(0.01) benign(0.107) TCGA-44-3918-01 1 158450094 158450094 T A OR10R2 Missense_Mutation p.Y143N 0.13 deleterious(0) probably_damaging(0.916) TCGA-44-3918-01 1 158576803 158576803 C A OR10Z1 Missense_Mutation p.T192K 0.11 deleterious(0) possibly_damaging(0.501) TCGA-44-3918-01 1 158632624 158632624 G T SPTA1 Missense_Mutation p.L778M 0.19 deleterious(0.01) probably_damaging(1) TCGA-44-3918-01 1 158670322 158670322 C A OR6K2 Nonsense_Mutation p.G41* 0.09 TCGA-44-3918-01 1 158670443 158670443 C A OR6K2 5'UTR 0.05 TCGA-44-3918-01 1 158724612 158724612 C T OR6K6 Nonsense_Mutation p.Q3* 0.07 TCGA-44-3918-01 1 158988130 158988130 C G IFI16 Missense_Mutation p.P221A 0.12 tolerated(0.25) benign(0.002) TCGA-44-3918-01 1 159035799 159035799 C A AIM2 Silent p.P239P 0.08 TCGA-44-3918-01 1 159284112 159284112 C A OR10J3 Missense_Mutation p.C113F 0.15 deleterious(0) probably_damaging(0.983) TCGA-44-3918-01 1 159558031 159558031 T C APCS Missense_Mutation p.F69L 0.16 deleterious(0) probably_damaging(1) TCGA-44-3918-01 1 159803141 159803141 C T SLAMF8 Missense_Mutation p.H255Y 0.19 tolerated(0.14) benign(0.009) TCGA-44-3918-01 1 159921658 159921658 T A SLAMF9 Splice_Site p.X222_splice 0.16 TCGA-44-3918-01 1 160323923 160323923 G T NCSTN Missense_Mutation p.A399S 0.12 tolerated(1) benign(0.007) TCGA-44-3918-01 1 16070920 16070920 C A TMEM82 Missense_Mutation p.P201H 0.38 deleterious(0.02) probably_damaging(0.994) TCGA-44-3918-01 1 16070921 16070921 C A TMEM82 Silent p.P201P 0.38 TCGA-44-3918-01 1 161161117 161161117 C T ADAMTS4 Silent p.G775G 0.12 TCGA-44-3918-01 1 161165959 161165959 A T ADAMTS4 Splice_Site p.X364_splice 0.34 TCGA-44-3918-01 1 161187846 161187846 C A FCER1G Silent p.T40T 0.04 TCGA-44-3918-01 1 161202960 161202960 C T NR1I3 Missense_Mutation p.R136K 0.08 tolerated(0.13) benign(0.001) TCGA-44-3918-01 1 161654814 161654814 G T RPL31P11 RNA 0.17 TCGA-44-3918-01 1 16258070 16258070 G T SPEN Missense_Mutation p.A1779S 0.11 benign(0.001) TCGA-44-3918-01 1 166904654 166904654 C - ILDR2 Frame_Shift_Del p.G255Afs*19 0.11 TCGA-44-3918-01 1 1670366 1670366 C G SLC35E2 Silent p.L151L 0.30 TCGA-44-3918-01 1 170695491 170695491 C A PRRX1 Missense_Mutation p.P183H 0.17 deleterious(0.04) probably_damaging(0.994) TCGA-44-3918-01 1 173455406 173455406 G - PRDX6 Frame_Shift_Del p.G138Vfs*6 0.09 TCGA-44-3918-01 1 175053004 175053004 A T TNN Silent p.T389T 0.09 TCGA-44-3918-01 1 175067651 175067651 C A TNN Missense_Mutation p.P680Q 0.07 deleterious(0.02) probably_damaging(1) TCGA-44-3918-01 1 175087879 175087879 C A TNN Missense_Mutation p.P857T 0.24 deleterious(0) probably_damaging(0.984) TCGA-44-3918-01 1 175092742 175092742 G T TNN Missense_Mutation p.V953L 0.24 tolerated(0.47) benign(0.173) TCGA-44-3918-01 1 175299342 175299342 G A TNR Nonsense_Mutation p.Q1221* 0.27 TCGA-44-3918-01 1 181767841 181767841 C A CACNA1E Silent p.P2271P 0.11 TCGA-44-3918-01 1 182025750 182025750 G T ZNF648 Missense_Mutation p.H466N 0.10 deleterious(0) probably_damaging(1) TCGA-44-3918-01 1 186934605 186934605 G T PLA2G4A Silent p.V548V 0.19 TCGA-44-3918-01 1 190067155 190067155 C A BRINP3 Missense_Mutation p.C765F 0.14 deleterious(0) probably_damaging(0.994) TCGA-44-3918-01 1 190203541 190203541 C T BRINP3 Missense_Mutation p.V229I 0.23 deleterious(0.03) probably_damaging(0.967) TCGA-44-3918-01 1 190234069 190234069 C A BRINP3 Missense_Mutation p.A182S 0.10 tolerated(0.27) probably_damaging(0.999) TCGA-44-3918-01 1 192544976 192544976 C A RGS1 Missense_Mutation p.F18L 0.15 tolerated(0.29) benign(0.006) TCGA-44-3918-01 1 1961087 1961087 G T GABRD Missense_Mutation p.W315C 0.07 deleterious(0.02) probably_damaging(0.986) TCGA-44-3918-01 1 201039427 201039427 G C CACNA1S Missense_Mutation p.S778C 0.22 deleterious(0) possibly_damaging(0.841) TCGA-44-3918-01 1 201832721 201832721 G C IPO9 Silent p.V538V 0.13 TCGA-44-3918-01 1 202391829 202391829 C T PPP1R12B Silent p.A168A 0.19 TCGA-44-3918-01 1 202391853 202391853 A T PPP1R12B Missense_Mutation p.Q176H 0.25 deleterious(0.02) benign(0.172) TCGA-44-3918-01 1 203055095 203055095 C A MYOG 5'UTR 0.14 TCGA-44-3918-01 1 203144911 203144911 G C MYBPH 5'UTR 0.10 TCGA-44-3918-01 1 205138360 205138360 T C DSTYK Missense_Mutation p.M419V 0.11 tolerated(0.17) benign(0.05) TCGA-44-3918-01 1 207751170 207751170 C A CR1 Missense_Mutation p.P1520T 0.26 deleterious(0) benign(0.021) TCGA-44-3918-01 1 207975855 207975855 C A C1orf132 RNA 0.11 TCGA-44-3918-01 1 207975856 207975856 C A C1orf132 RNA 0.11 TCGA-44-3918-01 1 209880128 209880128 C T HSD11B1 Silent p.F98F 0.09 TCGA-44-3918-01 1 209880129 209880129 G C HSD11B1 Missense_Mutation p.A99P 0.09 tolerated(0.58) benign(0.043) TCGA-44-3918-01 1 209933490 209933490 C A TRAF3IP3 Missense_Mutation p.R36S 0.23 deleterious(0) probably_damaging(0.999) TCGA-44-3918-01 1 209956858 209956858 C G C1orf74 Missense_Mutation p.G41A 0.18 tolerated(0.42) benign(0.059) TCGA-44-3918-01 1 210024611 210024611 A G DIEXF Missense_Mutation p.Y697C 0.07 deleterious(0) probably_damaging(1) TCGA-44-3918-01 1 210267766 210267766 C A SYT14 Missense_Mutation p.P226H 0.13 deleterious(0.05) possibly_damaging(0.693) TCGA-44-3918-01 1 210857003 210857003 C T KCNH1 Missense_Mutation p.E864K 0.16 tolerated_low_confidence(0.23) benign(0.004) TCGA-44-3918-01 1 211751606 211751606 G A SLC30A1 Missense_Mutation p.L117F 0.18 deleterious(0.03) benign(0.032) TCGA-44-3918-01 1 215807871 215807871 C A USH2A Missense_Mutation p.R5076I 0.18 probably_damaging(0.994) TCGA-44-3918-01 1 215901708 215901708 T C USH2A Silent p.E3910E 0.14 TCGA-44-3918-01 1 215972391 215972391 C A USH2A Silent p.P3272P 0.17 TCGA-44-3918-01 1 215990485 215990485 C G USH2A Missense_Mutation p.G3142R 0.07 possibly_damaging(0.452) TCGA-44-3918-01 1 216166501 216166502 TG - USH2A Frame_Shift_Del p.T2222Rfs*8 0.21 TCGA-44-3918-01 1 216420298 216420298 C T USH2A Missense_Mutation p.G813E 0.19 probably_damaging(1) TCGA-44-3918-01 1 216498839 216498839 C A USH2A Silent p.R317R 0.13 TCGA-44-3918-01 1 217947839 217947839 G - SPATA17 Frame_Shift_Del p.S229Lfs*23 0.24 TCGA-44-3918-01 1 218609453 218609453 G T TGFB2 Missense_Mutation p.R327L 0.12 deleterious(0) probably_damaging(0.999) TCGA-44-3918-01 1 220440457 220440457 C A RAB3GAP2 Intron 0.14 TCGA-44-3918-01 1 222715445 222715445 G T HHIPL2 Missense_Mutation p.L343I 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-44-3918-01 1 223176687 223176687 A G DISP1 Missense_Mutation p.T650A 0.20 tolerated(0.18) probably_damaging(0.989) TCGA-44-3918-01 1 223934731 223934731 G T CAPN2 Missense_Mutation p.G198V 0.16 deleterious(0) probably_damaging(0.994) TCGA-44-3918-01 1 224415298 224415298 C G NVL 3'UTR 0.24 TCGA-44-3918-01 1 228003800 228003800 G T PRSS38 Missense_Mutation p.R53L 0.08 deleterious(0.02) possibly_damaging(0.702) TCGA-44-3918-01 1 228548050 228548050 G T OBSCN Intron 0.16 TCGA-44-3918-01 1 235878603 235878603 C A LYST Missense_Mutation p.V3228L 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-44-3918-01 1 237023177 237023177 G T MTR Missense_Mutation p.W666C 0.14 deleterious(0) probably_damaging(0.994) TCGA-44-3918-01 1 237961414 237961414 C T RYR2 Silent p.D4678D 0.43 TCGA-44-3918-01 1 237993832 237993832 C T RYR2 Silent p.T4886T 0.20 TCGA-44-3918-01 1 237993872 237993872 A G RYR2 Missense_Mutation p.T4900A 0.08 possibly_damaging(0.636) TCGA-44-3918-01 1 240070814 240070814 A T CHRM3 Silent p.I21I 0.23 TCGA-44-3918-01 1 240969527 240969527 G T RGS7 Silent p.P394P 0.22 TCGA-44-3918-01 1 2409932 2409932 G A PLCH2 Missense_Mutation p.A21T 0.17 tolerated(0.45) benign(0.037) TCGA-44-3918-01 1 2428342 2428342 A G PLCH2 Missense_Mutation p.Y643C 0.17 deleterious(0) probably_damaging(0.944) TCGA-44-3918-01 1 244217639 244217639 A T ZBTB18 Missense_Mutation p.E188V 0.17 tolerated(0.16) benign(0.028) TCGA-44-3918-01 1 247492745 247492745 G A ZNF496 Missense_Mutation p.R46C 0.24 deleterious(0) probably_damaging(1) TCGA-44-3918-01 1 247607998 247607998 C A NLRP3 Silent p.S962S 0.28 TCGA-44-3918-01 1 247751945 247751945 T A OR2G2 Missense_Mutation p.I95N 0.13 deleterious(0) probably_damaging(0.943) TCGA-44-3918-01 1 247769736 247769736 C A OR2G3 Silent p.P283P 0.16 TCGA-44-3918-01 1 247875180 247875180 C A OR6F1 Missense_Mutation p.R293L 0.24 deleterious(0) possibly_damaging(0.828) TCGA-44-3918-01 1 247921086 247921086 A T OR1C1 Missense_Mutation p.L208H 0.09 deleterious(0) possibly_damaging(0.608) TCGA-44-3918-01 1 247921090 247921090 C G OR1C1 Missense_Mutation p.A207P 0.08 tolerated(0.06) possibly_damaging(0.898) TCGA-44-3918-01 1 248004595 248004595 G T OR11L1 Missense_Mutation p.L202M 0.22 tolerated(0.11) probably_damaging(1) TCGA-44-3918-01 1 248059604 248059604 G T OR2W3 Missense_Mutation p.G239V 0.22 deleterious(0.01) benign(0.148) TCGA-44-3918-01 1 248084548 248084548 C A OR2T8 Missense_Mutation p.P77T 0.16 deleterious(0) probably_damaging(1) TCGA-44-3918-01 1 248263401 248263401 A T OR2L13 Missense_Mutation p.T242S 0.13 tolerated(1) possibly_damaging(0.734) TCGA-44-3918-01 1 248343721 248343721 C A OR2M2 Missense_Mutation p.A145D 0.20 deleterious(0) possibly_damaging(0.772) TCGA-44-3918-01 1 248458403 248458403 C G OR2T12 Missense_Mutation p.A160P 0.10 tolerated(0.09) probably_damaging(0.936) TCGA-44-3918-01 1 248458652 248458652 G T OR2T12 Missense_Mutation p.P77T 0.13 deleterious(0) probably_damaging(1) TCGA-44-3918-01 1 248458805 248458805 A G OR2T12 Missense_Mutation p.F26L 0.24 deleterious(0.03) benign(0.216) TCGA-44-3918-01 1 27278544 27278544 T A C1orf172 Missense_Mutation p.S110C 0.20 deleterious(0.02) benign(0.004) TCGA-44-3918-01 1 27426944 27426944 C A SLC9A1 Nonsense_Mutation p.E768* 0.17 TCGA-44-3918-01 1 27426945 27426945 C T SLC9A1 Silent p.K767K 0.17 TCGA-44-3918-01 1 32678151 32678151 C T DCDC2B Silent p.Y196Y 0.11 TCGA-44-3918-01 1 36758225 36758225 A G THRAP3 Missense_Mutation p.T649A 0.16 deleterious(0) probably_damaging(0.953) TCGA-44-3918-01 1 38006165 38006165 C A SNIP1 Missense_Mutation p.Q173H 0.13 deleterious(0.03) benign(0.336) TCGA-44-3918-01 1 40881975 40881975 C T SMAP2 Missense_Mutation p.S270L 0.13 deleterious(0) possibly_damaging(0.45) TCGA-44-3918-01 1 43232495 43232495 C A LEPRE1 Missense_Mutation p.D50Y 0.12 deleterious(0.01) probably_damaging(1) TCGA-44-3918-01 1 44071951 44071951 G C PTPRF Missense_Mutation p.R1175P 0.18 deleterious(0) possibly_damaging(0.873) TCGA-44-3918-01 1 45470039 45470039 A T HECTD3 Missense_Mutation p.M718K 0.10 deleterious(0) possibly_damaging(0.864) TCGA-44-3918-01 1 4772510 4772510 T A AJAP1 Missense_Mutation p.S194T 0.14 tolerated(0.33) benign(0.182) TCGA-44-3918-01 1 50659500 50659500 C - ELAVL4 Frame_Shift_Del p.T159Pfs*2 0.18 TCGA-44-3918-01 1 52226377 52226377 G C OSBPL9 Missense_Mutation p.V210L 0.13 deleterious(0.04) probably_damaging(0.994) TCGA-44-3918-01 1 53153409 53153409 G A COA7 Missense_Mutation p.P227S 0.23 tolerated(0.95) benign(0) TCGA-44-3918-01 1 55612673 55612673 C A USP24 Missense_Mutation p.G727C 0.11 tolerated(0.12) possibly_damaging(0.711) TCGA-44-3918-01 1 58996336 58996336 C A OMA1 Missense_Mutation p.W359C 0.12 deleterious(0) probably_damaging(1) TCGA-44-3918-01 1 6027358 6027358 C T NPHP4 Splice_Site p.X173_splice 0.44 TCGA-44-3918-01 1 6185835 6185835 C A CHD5 Nonsense_Mutation p.E1388* 0.05 TCGA-44-3918-01 1 62995099 62995099 C G DOCK7 Missense_Mutation p.K1179N 0.22 tolerated(0.2) benign(0.082) TCGA-44-3918-01 1 66085608 66085608 C T LEPR Intron 0.17 TCGA-44-3918-01 1 67161094 67161094 C A SGIP1 Intron 0.11 TCGA-44-3918-01 1 67243037 67243037 G T TCTEX1D1 Missense_Mutation p.R147I 0.14 deleterious(0) probably_damaging(0.999) TCGA-44-3918-01 1 68947136 68947136 C G DEPDC1 Missense_Mutation p.G641A 0.19 deleterious(0) probably_damaging(0.981) TCGA-44-3918-01 1 70504169 70504169 A T LRRC7 Missense_Mutation p.S850C 0.30 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-44-3918-01 1 70541828 70541828 G A LRRC7 Silent p.P1395P 0.14 TCGA-44-3918-01 1 77635059 77635059 T G PIGK Silent p.A87A 0.22 TCGA-44-3918-01 1 77635082 77635082 T A PIGK Splice_Site p.X80_splice 0.25 TCGA-44-3918-01 1 78098394 78098394 C A ZZZ3 Missense_Mutation p.D216Y 0.11 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-44-3918-01 1 86246909 86246909 A C COL24A1 Silent p.G1444G 0.31 TCGA-44-3918-01 1 86497581 86497581 G T COL24A1 Missense_Mutation p.P677T 0.23 tolerated(0.07) possibly_damaging(0.579) TCGA-44-3918-01 20 10033777 10033778 - T ANKEF1 Frame_Shift_Ins p.A631Cfs*6 0.27 TCGA-44-3918-01 20 21687445 21687445 G T PAX1 Missense_Mutation p.R219L 0.15 deleterious(0) probably_damaging(0.999) TCGA-44-3918-01 20 23731392 23731392 C T CST1 Missense_Mutation p.D38N 0.37 tolerated(0.07) probably_damaging(0.971) TCGA-44-3918-01 20 3128165 3128165 C T FASTKD5 Missense_Mutation p.D518N 0.20 deleterious(0.04) probably_damaging(0.997) TCGA-44-3918-01 20 31647780 31647780 C T BPIFB3 Missense_Mutation p.P157L 0.40 tolerated(0.14) probably_damaging(1) TCGA-44-3918-01 20 34090885 34090885 A T CEP250 Missense_Mutation p.E1563V 0.23 possibly_damaging(0.877) TCGA-44-3918-01 20 36854137 36854137 G T KIAA1755 Missense_Mutation p.P700H 0.41 deleterious(0.01) probably_damaging(0.995) TCGA-44-3918-01 20 40080657 40080657 C A CHD6 Missense_Mutation p.R1111L 0.38 deleterious(0) probably_damaging(0.999) TCGA-44-3918-01 20 43400047 43400047 G T RIMS4 Missense_Mutation p.S36R 0.19 deleterious_low_confidence(0) benign(0.054) TCGA-44-3918-01 20 44675012 44675012 C T SLC12A5 Missense_Mutation p.A598V 0.09 deleterious(0.02) probably_damaging(0.954) TCGA-44-3918-01 20 5166437 5166437 G - CDS2 Frame_Shift_Del p.G266Afs*15 0.17 TCGA-44-3918-01 20 57899434 57899434 C A EDN3 Missense_Mutation p.P213T 0.09 tolerated_low_confidence(0.27) benign(0.339) TCGA-44-3918-01 20 5903859 5903859 C A CHGB Missense_Mutation p.L357M 0.39 deleterious(0.04) possibly_damaging(0.458) TCGA-44-3918-01 20 61340789 61340789 G T NTSR1 Missense_Mutation p.G77V 0.18 deleterious(0) probably_damaging(0.992) TCGA-44-3918-01 20 62046273 62046273 G A KCNQ2 Missense_Mutation p.S503L 0.10 tolerated(0.57) possibly_damaging(0.862) TCGA-44-3918-01 20 62065167 62065167 C T KCNQ2 Missense_Mutation p.M371I 0.26 tolerated(0.07) benign(0.118) TCGA-44-3918-01 20 8696897 8696897 T C PLCB1 Intron 0.27 TCGA-44-3918-01 21 10933880 10933880 G T TPTE Silent p.I333I 0.07 TCGA-44-3918-01 21 10951340 10951340 C A TPTE Missense_Mutation p.L124F 0.25 tolerated(0.28) benign(0.099) TCGA-44-3918-01 21 10951375 10951375 G A TPTE Silent p.L113L 0.27 TCGA-44-3918-01 21 27462312 27462312 C A APP Missense_Mutation p.G101V 0.16 deleterious(0.02) unknown(0) TCGA-44-3918-01 21 31538801 31538801 C G CLDN17 Missense_Mutation p.R45S 0.13 tolerated(0.11) benign(0.099) TCGA-44-3918-01 21 31588141 31588141 A T CLDN8 Missense_Mutation p.F35I 0.13 deleterious(0) probably_damaging(0.999) TCGA-44-3918-01 21 31654874 31654874 C A KRTAP24-1 Missense_Mutation p.G126V 0.25 deleterious(0) probably_damaging(0.993) TCGA-44-3918-01 21 31933529 31933529 C A KRTAP19-7 Missense_Mutation p.C27F 0.16 tolerated_low_confidence(0.25) unknown(0) TCGA-44-3918-01 21 31964961 31964961 G T KRTAP6-3 Missense_Mutation p.G59V 0.11 unknown(0) TCGA-44-3918-01 21 34166535 34166535 G A C21orf62 Silent p.V66V 0.06 TCGA-44-3918-01 21 36421221 36421221 C G RUNX1 5'UTR 0.15 TCGA-44-3918-01 21 45709652 45709652 G T AIRE Silent p.L255L 0.16 TCGA-44-3918-01 21 47692686 47692686 T A MCM3AP Missense_Mutation p.T752S 0.09 deleterious(0.03) possibly_damaging(0.589) TCGA-44-3918-01 22 16287380 16287380 C T POTEH Missense_Mutation p.R169K 0.15 tolerated(0.26) probably_damaging(0.989) TCGA-44-3918-01 22 16287853 16287853 G T POTEH Silent p.A11A 0.05 TCGA-44-3918-01 22 17468885 17468885 C T GAB4 Silent p.S217S 0.47 TCGA-44-3918-01 22 17581332 17581332 G T IL17RA Missense_Mutation p.G171W 0.09 deleterious(0) probably_damaging(1) TCGA-44-3918-01 22 17983998 17983998 C G CECR2 Missense_Mutation p.L233V 0.10 tolerated(0.11) benign(0.199) TCGA-44-3918-01 22 19035861 19035861 C A DGCR2 Intron 0.40 TCGA-44-3918-01 22 19708337 19708337 C T SEPT5 Missense_Mutation p.P221L 0.39 deleterious(0) probably_damaging(1) TCGA-44-3918-01 22 22664611 22664611 T G BMS1P20 RNA 0.39 TCGA-44-3918-01 22 23915735 23915735 C A IGLL1 Silent p.P120P 0.07 TCGA-44-3918-01 22 25294099 25294099 C T SGSM1 Missense_Mutation p.S783L 0.08 deleterious(0.02) possibly_damaging(0.573) TCGA-44-3918-01 22 26400821 26400821 G T MYO18B Missense_Mutation p.R2157M 0.26 deleterious(0) probably_damaging(0.969) TCGA-44-3918-01 22 28194258 28194258 G T MN1 Missense_Mutation p.H758Q 0.25 benign(0.206) TCGA-44-3918-01 22 32810311 32810311 C A BPIFC Missense_Mutation p.W501C 0.16 deleterious_low_confidence(0) possibly_damaging(0.786) TCGA-44-3918-01 22 36206048 36206048 T C RBFOX2 Missense_Mutation p.N81D 0.07 possibly_damaging(0.605) TCGA-44-3918-01 22 37770562 37770562 G T ELFN2 Missense_Mutation p.T338N 0.15 tolerated(0.98) benign(0.001) TCGA-44-3918-01 22 44368118 44368118 G T SAMM50 Missense_Mutation p.D109Y 0.30 deleterious(0.02) benign(0.027) TCGA-44-3918-01 22 45309812 45309812 G A PHF21B Nonsense_Mutation p.Q241* 0.11 TCGA-44-3918-01 22 50479677 50479677 C T TTLL8 Intron 0.11 TCGA-44-3918-01 2 10101410 10101410 C A GRHL1 Missense_Mutation p.P172T 0.08 tolerated(0.55) benign(0.043) TCGA-44-3918-01 2 102954739 102954739 C G IL1RL1 Missense_Mutation p.I5M 0.15 tolerated(0.2) possibly_damaging(0.569) TCGA-44-3918-01 2 103010927 103010927 A G IL18R1 Splice_Site p.X371_splice 0.15 TCGA-44-3918-01 2 105924085 105924085 C A TGFBRAP1 Missense_Mutation p.G225V 0.16 tolerated(0.06) probably_damaging(0.989) TCGA-44-3918-01 2 107459730 107459730 C A ST6GAL2 Missense_Mutation p.G235V 0.43 probably_damaging(0.917) TCGA-44-3918-01 2 108487530 108487530 G T RGPD4 Missense_Mutation p.D1024Y 0.07 deleterious(0) probably_damaging(0.96) TCGA-44-3918-01 2 108487578 108487578 C A RGPD4 Missense_Mutation p.P1040T 0.12 deleterious(0.04) probably_damaging(0.997) TCGA-44-3918-01 2 108487579 108487579 C G RGPD4 Missense_Mutation p.P1040R 0.12 deleterious(0) probably_damaging(0.999) TCGA-44-3918-01 2 110373178 110373178 G T SOWAHC Missense_Mutation p.R371M 0.16 deleterious(0) probably_damaging(0.999) TCGA-44-3918-01 2 118572260 118572260 G C DDX18 5'UTR 0.29 TCGA-44-3918-01 2 119699919 119699919 G T MARCO Nonsense_Mutation p.E15* 0.15 TCGA-44-3918-01 2 125367452 125367452 G T CNTNAP5 Missense_Mutation p.G610C 0.13 deleterious(0) probably_damaging(0.921) TCGA-44-3918-01 2 130737771 130737771 C A RAB6C Missense_Mutation p.S28Y 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-3918-01 2 130832810 130832810 C A POTEF Silent p.G745G 0.12 TCGA-44-3918-01 2 130948287 130948287 G T MZT2B 3'UTR 0.11 TCGA-44-3918-01 2 131704285 131704285 G C ARHGEF4 Intron 0.13 TCGA-44-3918-01 2 141283458 141283458 C T LRP1B Missense_Mutation p.G2661R 0.12 probably_damaging(0.989) TCGA-44-3918-01 2 142004857 142004857 G T LRP1B Missense_Mutation p.T177N 0.16 benign(0.002) TCGA-44-3918-01 2 145156600 145156600 G T ZEB2 Missense_Mutation p.N718K 0.07 tolerated(0.81) benign(0.002) TCGA-44-3918-01 2 145157187 145157187 T C ZEB2 Missense_Mutation p.K523E 0.14 deleterious(0) probably_damaging(0.995) TCGA-44-3918-01 2 145187523 145187523 C G ZEB2 Missense_Mutation p.E48D 0.15 tolerated(0.11) probably_damaging(0.956) TCGA-44-3918-01 2 148683668 148683668 C T ACVR2A Nonsense_Mutation p.Q429* 0.29 TCGA-44-3918-01 2 149227675 149227675 G T MBD5 Silent p.P721P 0.14 TCGA-44-3918-01 2 154334760 154334760 C T RPRM Missense_Mutation p.G107E 0.12 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-44-3918-01 2 15601462 15601462 C A NBAS Splice_Site p.X735_splice 0.12 TCGA-44-3918-01 2 160692035 160692035 T G LY75-CD302 Missense_Mutation p.D1210A 0.21 deleterious(0.01) probably_damaging(0.986) TCGA-44-3918-01 2 163292066 163292066 G T KCNH7 Silent p.L532L 0.07 TCGA-44-3918-01 2 168100897 168100897 C T XIRP2 Missense_Mutation p.H999Y 0.13 probably_damaging(0.999) TCGA-44-3918-01 2 168115375 168115375 G A XIRP2 3'UTR 0.18 TCGA-44-3918-01 2 170131704 170131704 C G LRP2 Missense_Mutation p.G606A 0.22 benign(0.053) TCGA-44-3918-01 2 170558020 170558020 G T PHOSPHO2 Missense_Mutation p.G180V 0.13 deleterious(0) probably_damaging(1) TCGA-44-3918-01 2 172965595 172965595 G T DLX2 Missense_Mutation p.H221Q 0.34 tolerated(0.25) benign(0.009) TCGA-44-3918-01 2 179440902 179440902 G A TTN Silent p.I23319I 0.15 TCGA-44-3918-01 2 179440974 179440974 G A TTN Silent p.A23295A 0.13 TCGA-44-3918-01 2 179567309 179567309 G A TTN Missense_Mutation p.S10102F 0.11 TCGA-44-3918-01 2 179615786 179615786 C G TTN Intron 0.07 TCGA-44-3918-01 2 179702053 179702053 G T CCDC141 Missense_Mutation p.P1298H 0.09 tolerated(0.53) possibly_damaging(0.448) TCGA-44-3918-01 2 179702335 179702335 T A CCDC141 Missense_Mutation p.E1204V 0.07 deleterious(0) possibly_damaging(0.662) TCGA-44-3918-01 2 179989108 179989108 G T SESTD1 Missense_Mutation p.H384N 0.16 deleterious(0.01) probably_damaging(0.968) TCGA-44-3918-01 2 182346387 182346387 C A ITGA4 Missense_Mutation p.P273T 0.07 deleterious(0) probably_damaging(1) TCGA-44-3918-01 2 182346388 182346388 C A ITGA4 Missense_Mutation p.P273H 0.07 deleterious(0) probably_damaging(1) TCGA-44-3918-01 2 183832073 183832073 G C NCKAP1 Nonsense_Mutation p.S506* 0.18 TCGA-44-3918-01 2 1855465 1855465 G T MYT1L Missense_Mutation p.P906T 0.24 deleterious(0) probably_damaging(1) TCGA-44-3918-01 2 185801843 185801843 G T ZNF804A Missense_Mutation p.D574Y 0.39 deleterious(0) possibly_damaging(0.754) TCGA-44-3918-01 2 185802247 185802247 G T ZNF804A Missense_Mutation p.M708I 0.14 tolerated(0.23) benign(0.01) TCGA-44-3918-01 2 187694605 187694605 T A ZSWIM2 Missense_Mutation p.Q315L 0.15 tolerated(0.13) benign(0.296) TCGA-44-3918-01 2 189599394 189599394 C T DIRC1 Missense_Mutation p.R85K 0.09 tolerated_low_confidence(0.24) benign(0.002) TCGA-44-3918-01 2 189873773 189873773 G T COL3A1 Missense_Mutation p.A1217S 0.13 unknown(0) TCGA-44-3918-01 2 196709748 196709748 T C DNAH7 Missense_Mutation p.I2975V 0.25 tolerated(0.61) benign(0.035) TCGA-44-3918-01 2 199011651 199011651 G T PLCL1 Nonsense_Mutation p.E1085* 0.14 TCGA-44-3918-01 2 200246529 200246529 C A SATB2 Nonsense_Mutation p.G121* 0.15 TCGA-44-3918-01 2 206610595 206610595 G T NRP2 Silent p.V589V 0.17 TCGA-44-3918-01 2 21235092 21235092 G T APOB Missense_Mutation p.L1550M 0.11 probably_damaging(0.997) TCGA-44-3918-01 2 215880350 215880350 G C ABCA12 Missense_Mutation p.T607S 0.15 tolerated(0.74) benign(0.002) TCGA-44-3918-01 2 219855026 219855026 C - CRYBA2 Frame_Shift_Del p.G181Afs*27 0.12 TCGA-44-3918-01 2 219922303 219922303 G T IHH Silent p.S143S 0.16 TCGA-44-3918-01 2 220116417 220116417 G A TUBA4A Missense_Mutation p.P82L 0.24 deleterious_low_confidence(0.03) benign(0.001) TCGA-44-3918-01 2 220421267 220421267 G T OBSL1 Silent p.I1415I 0.17 TCGA-44-3918-01 2 220424002 220424002 G T OBSL1 Silent p.G1057G 0.14 TCGA-44-3918-01 2 225346795 225346795 C A CUL3 Nonsense_Mutation p.E615* 0.25 TCGA-44-3918-01 2 228882376 228882376 G T SPHKAP Missense_Mutation p.P1065H 0.12 deleterious(0) possibly_damaging(0.738) TCGA-44-3918-01 2 229890732 229890732 C T PID1 Silent p.T121T 0.14 TCGA-44-3918-01 2 231065682 231065682 C A SP110 Splice_Site p.X350_splice 0.20 TCGA-44-3918-01 2 233392133 233392133 C A CHRND Missense_Mutation p.T74N 0.21 deleterious(0) benign(0.383) TCGA-44-3918-01 2 233398732 233398732 C T CHRND Missense_Mutation p.S380F 0.18 deleterious(0) probably_damaging(1) TCGA-44-3918-01 2 234463045 234463045 C T USP40 Missense_Mutation p.R237K 0.21 tolerated(0.88) benign(0.008) TCGA-44-3918-01 2 234749700 234749700 G T HJURP Missense_Mutation p.R576S 0.20 deleterious(0.05) probably_damaging(0.997) TCGA-44-3918-01 2 237074654 237074654 G T GBX2 Missense_Mutation p.P317H 0.15 deleterious(0.02) probably_damaging(0.981) TCGA-44-3918-01 2 241570038 241570038 C G GPR35 Silent p.L254L 0.11 TCGA-44-3918-01 2 241659303 241659303 C T KIF1A Missense_Mutation p.E1637K 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.562) TCGA-44-3918-01 2 26671598 26671598 C T DRC1 Missense_Mutation p.S479F 0.14 deleterious(0.01) possibly_damaging(0.712) TCGA-44-3918-01 2 27361199 27361199 G A C2orf53 5'UTR 0.36 TCGA-44-3918-01 2 27373132 27373132 G T TCF23 Missense_Mutation p.A122S 0.41 tolerated(0.13) benign(0.021) TCGA-44-3918-01 2 27457406 27457406 T A CAD Silent p.I1213I 0.07 TCGA-44-3918-01 2 32602748 32602748 C T BIRC6 Missense_Mutation p.L140F 0.15 probably_damaging(0.994) TCGA-44-3918-01 2 37235751 37235751 C G HEATR5B Intron 0.09 TCGA-44-3918-01 2 39075411 39075411 C A DHX57 Missense_Mutation p.G722C 0.08 deleterious(0) probably_damaging(1) TCGA-44-3918-01 2 39893425 39893425 G T TMEM178A Missense_Mutation p.G104V 0.44 deleterious(0) probably_damaging(0.977) TCGA-44-3918-01 2 49189949 49189949 G T FSHR Missense_Mutation p.H671N 0.09 tolerated(0.28) benign(0.009) TCGA-44-3918-01 2 49189950 49189950 G T FSHR Silent p.G670G 0.09 TCGA-44-3918-01 2 49190729 49190729 T C FSHR Missense_Mutation p.I411V 0.13 deleterious(0) benign(0.258) TCGA-44-3918-01 2 51255054 51255054 G T NRXN1 Missense_Mutation p.R120S 0.07 tolerated(1) benign(0.013) TCGA-44-3918-01 2 55894185 55894185 C A PNPT1 Nonsense_Mutation p.E373* 0.15 TCGA-44-3918-01 2 60689032 60689032 T A BCL11A Missense_Mutation p.M339L 0.28 tolerated(0.12) possibly_damaging(0.636) TCGA-44-3918-01 2 69034414 69034414 G T ARHGAP25 Missense_Mutation p.G159V 0.13 deleterious(0) probably_damaging(0.996) TCGA-44-3918-01 2 71058869 71058869 C A CD207 Missense_Mutation p.V267L 0.15 deleterious(0.01) benign(0.153) TCGA-44-3918-01 2 71058870 71058870 C A CD207 Missense_Mutation p.W266C 0.14 deleterious(0) probably_damaging(1) TCGA-44-3918-01 2 71220883 71220883 T G TEX261 Silent p.A31A 0.13 TCGA-44-3918-01 2 73478400 73478400 C A CCT7 Missense_Mutation p.S417Y 0.16 deleterious(0) probably_damaging(0.927) TCGA-44-3918-01 2 73520449 73520449 G A EGR4 Silent p.R102R 0.37 TCGA-44-3918-01 2 79314057 79314057 C A REG1B Splice_Site p.X22_splice 0.13 TCGA-44-3918-01 2 79384787 79384787 C A REG3A Missense_Mutation p.S124I 0.11 deleterious(0) probably_damaging(0.967) TCGA-44-3918-01 2 79386540 79386540 C A REG3A 5'UTR 0.20 TCGA-44-3918-01 2 80530092 80530092 G T LRRTM1 Missense_Mutation p.L285M 0.32 deleterious(0) probably_damaging(0.999) TCGA-44-3918-01 2 89459364 89459364 G A IGKV6-21 Silent p.S71S 0.05 TCGA-44-3918-01 2 89459449 89459449 C A IGKV6-21 Missense_Mutation p.R43L 0.40 deleterious(0) benign(0.206) TCGA-44-3918-01 2 90139367 90139367 G T IGKV1D-16 Silent p.R46R 0.11 TCGA-44-3918-01 2 9583777 9583777 A C CPSF3 Missense_Mutation p.K410T 0.27 tolerated(0.12) benign(0.09) TCGA-44-3918-01 2 9583780 9583780 C T CPSF3 Missense_Mutation p.P411L 0.27 deleterious(0.02) probably_damaging(0.962) TCGA-44-3918-01 2 97523712 97523712 G C ANKRD39 Missense_Mutation p.R5G 0.21 tolerated_low_confidence(0.2) benign(0) TCGA-44-3918-01 2 97749976 97749976 C A FAHD2B Nonsense_Mutation p.E242* 0.22 TCGA-44-3918-01 3 100002545 100002545 T A TBC1D23 Nonsense_Mutation p.Y122* 0.09 TCGA-44-3918-01 3 10005863 10005863 C G EMC3 Missense_Mutation p.E226Q 0.10 tolerated(0.25) benign(0.088) TCGA-44-3918-01 3 100569548 100569548 G T ABI3BP Missense_Mutation p.P419Q 0.19 deleterious(0.01) possibly_damaging(0.804) TCGA-44-3918-01 3 100964923 100964923 G - IMPG2 Frame_Shift_Del p.S423Qfs*36 0.12 TCGA-44-3918-01 3 10140682 10140682 A G FANCD2 3'UTR 0.50 TCGA-44-3918-01 3 102189322 102189322 G T ZPLD1 Missense_Mutation p.A356S 0.31 tolerated(0.58) benign(0.171) TCGA-44-3918-01 3 111603453 111603453 C A PHLDB2 Missense_Mutation p.L177M 0.12 deleterious(0) probably_damaging(0.999) TCGA-44-3918-01 3 111782419 111782419 C G TMPRSS7 Missense_Mutation p.Q373E 0.06 tolerated(0.1) benign(0.007) TCGA-44-3918-01 3 113377384 113377384 G A KIAA2018 Nonsense_Mutation p.Q1049* 0.19 TCGA-44-3918-01 3 113378844 113378844 G A KIAA2018 Missense_Mutation p.P562L 0.21 possibly_damaging(0.594) TCGA-44-3918-01 3 113955203 113955203 G T ZNF80 Missense_Mutation p.T240N 0.09 deleterious(0.04) benign(0.103) TCGA-44-3918-01 3 114069770 114069770 G A ZBTB20 Silent p.T385T 0.23 TCGA-44-3918-01 3 119263667 119263667 A G CD80 Missense_Mutation p.C50R 0.13 deleterious(0) probably_damaging(1) TCGA-44-3918-01 3 119526124 119526124 G T NR1I2 Missense_Mutation p.W48C 0.17 deleterious_low_confidence(0) possibly_damaging(0.628) TCGA-44-3918-01 3 121230733 121230733 C G POLQ Splice_Site p.X537_splice 0.07 TCGA-44-3918-01 3 121825185 121825185 G T CD86 Nonsense_Mutation p.E181* 0.17 TCGA-44-3918-01 3 126707723 126707723 A T PLXNA1 Missense_Mutation p.Y96F 0.14 deleterious(0) probably_damaging(0.998) TCGA-44-3918-01 3 129140308 129140308 G C EFCAB12 Missense_Mutation p.P130A 0.36 tolerated(0.23) benign(0.031) TCGA-44-3918-01 3 130187917 130187917 C A COL6A5 Missense_Mutation p.L2357M 0.31 tolerated(0.15) benign(0.358) TCGA-44-3918-01 3 133485215 133485215 G C TF Missense_Mutation p.R475T 0.34 tolerated(0.17) benign(0.092) TCGA-44-3918-01 3 134670266 134670266 G T EPHB1 Missense_Mutation p.Q59H 0.11 deleterious(0) probably_damaging(0.995) TCGA-44-3918-01 3 138724984 138724984 G T PRR23A Missense_Mutation p.P43T 0.30 tolerated(0.07) possibly_damaging(0.779) TCGA-44-3918-01 3 138762737 138762737 G T PRR23C Missense_Mutation p.H242Q 0.20 tolerated(0.37) benign(0.034) TCGA-44-3918-01 3 14559363 14559363 C T GRIP2 RNA 0.16 TCGA-44-3918-01 3 148558510 148558510 C A CPB1 Missense_Mutation p.Q104K 0.25 deleterious(0.01) probably_damaging(0.969) TCGA-44-3918-01 3 149089533 149089533 T A TM4SF1 Missense_Mutation p.I179F 0.16 tolerated(0.08) benign(0.076) TCGA-44-3918-01 3 150128499 150128499 G T TSC22D2 Silent p.P454P 0.25 TCGA-44-3918-01 3 15493117 15493117 C A COLQ 3'UTR 0.24 TCGA-44-3918-01 3 15677002 15677002 C T BTD Missense_Mutation p.A39V 0.13 tolerated_low_confidence(0.05) benign(0.01) TCGA-44-3918-01 3 167090621 167090621 C A ZBBX Splice_Site p.X23_splice 0.21 TCGA-44-3918-01 3 171323120 171323120 G A PLD1 Missense_Mutation p.T990I 0.09 tolerated(0.06) benign(0.03) TCGA-44-3918-01 3 173996901 173996901 G T NLGN1 Missense_Mutation p.Q370H 0.39 deleterious(0.01) probably_damaging(0.98) TCGA-44-3918-01 3 17448047 17448047 T A TBC1D5 Intron 0.30 TCGA-44-3918-01 3 179287864 179287864 C A ACTL6A Missense_Mutation p.P38T 0.10 deleterious(0) probably_damaging(1) TCGA-44-3918-01 3 180372645 180372645 A G CCDC39 Missense_Mutation p.F279L 0.12 tolerated(0.15) benign(0) TCGA-44-3918-01 3 183995122 183995122 C A ECE2 Missense_Mutation p.P234T 0.28 deleterious(0) probably_damaging(0.999) TCGA-44-3918-01 3 184076898 184076898 C A CLCN2 Missense_Mutation p.D29Y 0.38 deleterious(0) possibly_damaging(0.571) TCGA-44-3918-01 3 21467159 21467159 G C ZNF385D Missense_Mutation p.T226S 0.12 tolerated(0.82) probably_damaging(0.973) TCGA-44-3918-01 3 25542753 25542753 C T RARB Silent p.T129T 0.15 TCGA-44-3918-01 3 30842529 30842529 C A GADL1 Missense_Mutation p.D368Y 0.25 deleterious(0) probably_damaging(1) TCGA-44-3918-01 3 369858 369858 G T CHL1 Missense_Mutation p.W69L 0.12 deleterious(0) probably_damaging(0.976) TCGA-44-3918-01 3 37042530 37042530 G T MLH1 Missense_Mutation p.G98C 0.12 deleterious(0) probably_damaging(1) TCGA-44-3918-01 3 38608022 38608022 C G SCN5A Missense_Mutation p.E1240Q 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-44-3918-01 3 39227262 39227262 G T XIRP1 Silent p.T1225T 0.07 TCGA-44-3918-01 3 40499405 40499405 G T RPL14 Missense_Mutation p.G10C 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-44-3918-01 3 45077113 45077113 G A CLEC3B Silent p.G102G 0.12 TCGA-44-3918-01 3 45153906 45153906 C A CDCP1 Missense_Mutation p.E108D 0.09 tolerated(0.79) benign(0.031) TCGA-44-3918-01 3 45530212 45530212 G T LARS2 Missense_Mutation p.D383Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-44-3918-01 3 48698311 48698311 C A CELSR3 Missense_Mutation p.S586I 0.09 deleterious(0) probably_damaging(0.962) TCGA-44-3918-01 3 52817001 52817001 G T ITIH1 Missense_Mutation p.G320V 0.06 tolerated(0.06) possibly_damaging(0.598) TCGA-44-3918-01 3 56207487 56207487 A G ERC2 Missense_Mutation p.V379A 0.20 deleterious(0) benign(0.153) TCGA-44-3918-01 3 68802096 68802096 T A FAM19A4 Missense_Mutation p.E68D 0.51 deleterious(0.01) probably_damaging(1) TCGA-44-3918-01 3 73673761 73673761 C A PDZRN3 Missense_Mutation p.K72N 0.13 deleterious(0) possibly_damaging(0.63) TCGA-44-3918-01 3 93780073 93780073 C A DHFRL1 Missense_Mutation p.D95Y 0.20 deleterious(0.01) possibly_damaging(0.585) TCGA-44-3918-01 3 98109949 98109949 G C OR5K3 Missense_Mutation p.G147A 0.10 tolerated(0.57) benign(0.12) TCGA-44-3918-01 4 104067249 104067249 T C CENPE Missense_Mutation p.S1384G 0.26 benign(0) TCGA-44-3918-01 4 106863837 106863837 G T NPNT Missense_Mutation p.Q409H 0.10 deleterious(0.04) probably_damaging(0.995) TCGA-44-3918-01 4 109004522 109004522 G C LEF1 Missense_Mutation p.P210A 0.20 deleterious(0.04) possibly_damaging(0.588) TCGA-44-3918-01 4 114257011 114257011 G T ANK2 Missense_Mutation p.S1130I 0.35 possibly_damaging(0.642) TCGA-44-3918-01 4 114276714 114276714 G T ANK2 Missense_Mutation p.G2314C 0.32 benign(0.037) TCGA-44-3918-01 4 119952640 119952640 A T SYNPO2 Missense_Mutation p.T904S 0.15 tolerated(0.13) benign(0.435) TCGA-44-3918-01 4 119979120 119979120 T C SYNPO2 3'UTR 0.11 TCGA-44-3918-01 4 123192197 123192197 A T KIAA1109 Silent p.P2506P 0.10 TCGA-44-3918-01 4 123207825 123207825 G T KIAA1109 Missense_Mutation p.G3056V 0.06 probably_damaging(1) TCGA-44-3918-01 4 126241500 126241500 A T FAT4 Missense_Mutation p.T1312S 0.32 benign(0.002) TCGA-44-3918-01 4 126336650 126336650 G T FAT4 Missense_Mutation p.A2178S 0.10 possibly_damaging(0.683) TCGA-44-3918-01 4 138453099 138453099 T A PCDH18 Silent p.S48S 0.29 TCGA-44-3918-01 4 141590959 141590959 C A TBC1D9 Splice_Site p.X423_splice 0.10 TCGA-44-3918-01 4 153896629 153896629 G C FHDC1 Missense_Mutation p.R729T 0.10 tolerated(0.46) benign(0.002) TCGA-44-3918-01 4 155249266 155249266 C A DCHS2 Missense_Mutation p.V878F 0.23 deleterious(0) probably_damaging(0.97) TCGA-44-3918-01 4 155749036 155749036 C A RBM46 Silent p.R473R 0.24 TCGA-44-3918-01 4 158254494 158254494 G T GRIA2 Missense_Mutation p.G382W 0.12 deleterious(0) probably_damaging(1) TCGA-44-3918-01 4 158257624 158257624 C T GRIA2 Silent p.I523I 0.09 TCGA-44-3918-01 4 159772515 159772515 G A FNIP2 Missense_Mutation p.S257N 0.14 tolerated(0.21) possibly_damaging(0.679) TCGA-44-3918-01 4 16010666 16010666 G T PROM1 Missense_Mutation p.Q403K 0.16 tolerated(0.09) benign(0.192) TCGA-44-3918-01 4 162307436 162307436 G T FSTL5 Missense_Mutation p.S669R 0.11 tolerated(0.36) benign(0.053) TCGA-44-3918-01 4 166385677 166385677 G C CPE Missense_Mutation p.S148T 0.12 tolerated(0.72) benign(0.096) TCGA-44-3918-01 4 166405728 166405728 C A CPE Missense_Mutation p.N315K 0.09 deleterious(0) probably_damaging(1) TCGA-44-3918-01 4 173730517 173730517 C A GALNTL6 Missense_Mutation p.L187M 0.07 deleterious(0) probably_damaging(0.998) TCGA-44-3918-01 4 174450170 174450170 C A HAND2 Missense_Mutation p.G91C 0.17 tolerated(0.06) benign(0.237) TCGA-44-3918-01 4 178881962 178881962 T A LINC01098 5'UTR 0.26 TCGA-44-3918-01 4 186180179 186180179 T C SNX25 Missense_Mutation p.L67S 0.10 deleterious(0) probably_damaging(0.986) TCGA-44-3918-01 4 187178397 187178397 C T KLKB1 Silent p.L535L 0.10 TCGA-44-3918-01 4 189061091 189061091 C A TRIML1 Missense_Mutation p.L127I 0.25 tolerated(0.42) benign(0.049) TCGA-44-3918-01 4 3029638 3029638 G T GRK4 Splice_Site p.X324_splice 0.22 TCGA-44-3918-01 4 3029639 3029639 G T GRK4 Missense_Mutation p.G324V 0.23 deleterious(0) possibly_damaging(0.896) TCGA-44-3918-01 4 30724540 30724540 G A PCDH7 Missense_Mutation p.R499Q 0.10 tolerated(0.08) benign(0.013) TCGA-44-3918-01 4 38037262 38037262 G C TBC1D1 Silent p.L452L 0.25 TCGA-44-3918-01 4 39109334 39109334 G - KLHL5 Frame_Shift_Del p.A604Qfs*3 0.21 TCGA-44-3918-01 4 41615532 41615532 A T LIMCH1 Missense_Mutation p.Y179F 0.24 deleterious(0) probably_damaging(0.995) TCGA-44-3918-01 4 52961183 52961183 C A SPATA18 3'UTR 0.10 TCGA-44-3918-01 4 52961185 52961185 C A SPATA18 3'UTR 0.10 TCGA-44-3918-01 4 68374686 68374686 C G CENPC Missense_Mutation p.A584P 0.22 tolerated(0.21) benign(0.001) TCGA-44-3918-01 4 68512442 68512442 C G UBA6 Missense_Mutation p.R439P 0.29 tolerated(0.05) possibly_damaging(0.905) TCGA-44-3918-01 4 69334628 69334628 G T TMPRSS11E Missense_Mutation p.R97M 0.16 deleterious(0.03) probably_damaging(0.909) TCGA-44-3918-01 4 70346519 70346519 T C UGT2B4 Missense_Mutation p.K474E 0.14 deleterious(0.02) possibly_damaging(0.85) TCGA-44-3918-01 4 70346553 70346553 G T UGT2B4 Missense_Mutation p.F462L 0.15 deleterious(0.02) possibly_damaging(0.521) TCGA-44-3918-01 4 73414200 73414200 C T ADAMTS3 Missense_Mutation p.G167S 0.27 deleterious(0) probably_damaging(0.998) TCGA-44-3918-01 4 76781891 76781891 C G PPEF2 Missense_Mutation p.G731R 0.18 tolerated_low_confidence(0.1) benign(0.014) TCGA-44-3918-01 4 77661931 77661931 G A SHROOM3 Missense_Mutation p.G869R 0.36 tolerated(0.89) benign(0.001) TCGA-44-3918-01 4 7795473 7795473 C A AFAP1 Silent p.L449L 0.16 TCGA-44-3918-01 4 80246658 80246658 G T NAA11 Missense_Mutation p.T125N 0.09 deleterious(0.01) possibly_damaging(0.562) TCGA-44-3918-01 4 81974563 81974563 G C BMP3 Missense_Mutation p.G431A 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-44-3918-01 4 85419150 85419150 C A NKX6-1 Missense_Mutation p.G78W 0.15 tolerated_low_confidence(0.1) probably_damaging(0.965) TCGA-44-3918-01 4 85419151 85419151 C A NKX6-1 Silent p.T77T 0.15 TCGA-44-3918-01 4 85617181 85617181 G A WDFY3 Missense_Mutation p.P2948L 0.34 deleterious(0) probably_damaging(1) TCGA-44-3918-01 4 87022299 87022299 C A MAPK10 Missense_Mutation p.R212S 0.14 deleterious(0) probably_damaging(0.993) TCGA-44-3918-01 4 94344041 94344041 C A GRID2 Nonsense_Mutation p.Y489* 0.28 TCGA-44-3918-01 4 94693256 94693256 C - GRID2 Frame_Shift_Del p.H878Ifs*4 0.26 TCGA-44-3918-01 4 96761384 96761384 C A PDHA2 Missense_Mutation p.S28Y 0.09 tolerated(1) benign(0) TCGA-44-3918-01 5 101748721 101748721 T C SLCO6A1 Silent p.T533T 0.19 TCGA-44-3918-01 5 102503828 102503828 C A PPIP5K2 Silent p.S705S 0.15 TCGA-44-3918-01 5 10403613 10403613 A G MARCH6 Missense_Mutation p.Y431C 0.12 deleterious(0.02) benign(0.423) TCGA-44-3918-01 5 1094281 1094281 C A SLC12A7 Missense_Mutation p.M69I 0.09 deleterious(0.02) benign(0.028) TCGA-44-3918-01 5 11346597 11346597 C A CTNND2 Missense_Mutation p.Q505H 0.12 tolerated(0.08) benign(0.005) TCGA-44-3918-01 5 114598499 114598499 C A PGGT1B Missense_Mutation p.R17L 0.15 tolerated(0.05) benign(0.127) TCGA-44-3918-01 5 118814643 118814643 G A HSD17B4 Silent p.R208R 0.12 TCGA-44-3918-01 5 121187716 121187716 C A FTMT Missense_Mutation p.R20S 0.11 tolerated_low_confidence(0.08) benign(0.006) TCGA-44-3918-01 5 126993374 126993374 A G CTXN3 Missense_Mutation p.D54G 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-44-3918-01 5 127730962 127730962 T A FBN2 Nonsense_Mutation p.R362* 0.27 TCGA-44-3918-01 5 129521374 129521374 T C CHSY3 Missense_Mutation p.Y847H 0.21 deleterious(0.02) probably_damaging(0.996) TCGA-44-3918-01 5 134364843 134364843 G T PITX1 Missense_Mutation p.P191T 0.09 tolerated(0.07) benign(0.028) TCGA-44-3918-01 5 137354124 137354124 G A FAM13B Silent p.S79S 0.06 TCGA-44-3918-01 5 13751281 13751281 T A DNAH5 Missense_Mutation p.E3706V 0.07 possibly_damaging(0.728) TCGA-44-3918-01 5 137726954 137726954 G C KDM3B Missense_Mutation p.E545Q 0.23 tolerated_low_confidence(0.05) probably_damaging(0.986) TCGA-44-3918-01 5 140076891 140076891 G T HARS2 Missense_Mutation p.G366V 0.08 deleterious(0.01) possibly_damaging(0.602) TCGA-44-3918-01 5 140209546 140209546 G A PCDHA6 Missense_Mutation p.V624M 0.16 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-44-3918-01 5 140255544 140255544 G T PCDHA12 Missense_Mutation p.G163C 0.09 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-3918-01 5 140256217 140256217 G T PCDHA12 Missense_Mutation p.C387F 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-3918-01 5 140481294 140481294 G C PCDHB3 Missense_Mutation p.S354T 0.21 tolerated_low_confidence(0.05) benign(0.058) TCGA-44-3918-01 5 140481566 140481566 A C PCDHB3 Missense_Mutation p.N445H 0.10 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-44-3918-01 5 140481802 140481802 C A PCDHB3 Silent p.A523A 0.20 TCGA-44-3918-01 5 140516349 140516349 G T PCDHB5 Missense_Mutation p.D445Y 0.06 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-44-3918-01 5 140563749 140563749 C A PCDHB16 Missense_Mutation p.P539T 0.16 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-44-3918-01 5 140590632 140590632 G T PCDHB12 Missense_Mutation p.R718M 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.664) TCGA-44-3918-01 5 140595759 140595759 C A PCDHB13 Silent p.V688V 0.17 TCGA-44-3918-01 5 140627002 140627002 C A PCDHB15 Missense_Mutation p.A619E 0.16 deleterious_low_confidence(0) possibly_damaging(0.636) TCGA-44-3918-01 5 140710390 140710390 A T PCDHGA1 Missense_Mutation p.N47Y 0.16 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-44-3918-01 5 140745823 140745823 C G PCDHGA5 Silent p.L642L 0.11 TCGA-44-3918-01 5 140801578 140801579 - T PCDHGA11 Frame_Shift_Ins p.L263Afs*4 0.17 TCGA-44-3918-01 5 140812312 140812312 G T PCDHGA12 Silent p.V662V 0.20 TCGA-44-3918-01 5 141693977 141693977 C A SPRY4 Missense_Mutation p.A256S 0.17 tolerated(0.51) benign(0.145) TCGA-44-3918-01 5 146788307 146788307 A T DPYSL3 Missense_Mutation p.L339Q 0.13 tolerated(0.07) probably_damaging(1) TCGA-44-3918-01 5 147661762 147661762 C G SPINK13 Missense_Mutation p.F68L 0.18 deleterious(0.01) benign(0.22) TCGA-44-3918-01 5 148384392 148384392 T A SH3TC2 Missense_Mutation p.Q1250L 0.09 deleterious(0) benign(0.146) TCGA-44-3918-01 5 148427439 148427439 G A SH3TC2 Missense_Mutation p.R89C 0.08 tolerated(0.34) benign(0.001) TCGA-44-3918-01 5 149466036 149466036 C A CSF1R 5'UTR 0.30 TCGA-44-3918-01 5 150856211 150856211 G C SLC36A1 Missense_Mutation p.G295R 0.20 deleterious(0) probably_damaging(0.998) TCGA-44-3918-01 5 150905354 150905354 T A FAT2 Missense_Mutation p.Q3494L 0.18 benign(0.41) TCGA-44-3918-01 5 154396417 154396417 G T KIF4B Missense_Mutation p.A1000S 0.18 tolerated(0.15) benign(0.011) TCGA-44-3918-01 5 156479505 156479505 C A HAVCR1 Silent p.T180T 0.13 TCGA-44-3918-01 5 156895765 156895765 G T NIPAL4 Missense_Mutation p.A186S 0.13 deleterious(0) possibly_damaging(0.498) TCGA-44-3918-01 5 160059375 160059375 C A ATP10B Splice_Site p.X461_splice 0.09 TCGA-44-3918-01 5 161128727 161128727 G T GABRA6 Missense_Mutation p.W437L 0.24 deleterious(0) probably_damaging(0.993) TCGA-44-3918-01 5 162900540 162900540 G T HMMR Missense_Mutation p.C294F 0.24 deleterious(0.02) possibly_damaging(0.712) TCGA-44-3918-01 5 168187881 168187881 G T SLIT3 Silent p.P557P 0.24 TCGA-44-3918-01 5 169141187 169141187 G T DOCK2 Silent p.L605L 0.14 TCGA-44-3918-01 5 179306047 179306047 C A TBC1D9B Missense_Mutation p.G523W 0.14 deleterious(0) probably_damaging(1) TCGA-44-3918-01 5 180000988 180000988 G T CNOT6 Missense_Mutation p.G488C 0.15 deleterious(0) probably_damaging(1) TCGA-44-3918-01 5 1878301 1878301 G T IRX4 Missense_Mutation p.L448I 0.24 deleterious(0.05) benign(0.437) TCGA-44-3918-01 5 19838945 19838945 G T CDH18 Missense_Mutation p.P51T 0.33 tolerated(0.61) probably_damaging(0.992) TCGA-44-3918-01 5 24537671 24537671 C A CDH10 Missense_Mutation p.R115M 0.16 deleterious(0.04) possibly_damaging(0.697) TCGA-44-3918-01 5 24593550 24593550 G T CDH10 Missense_Mutation p.P17Q 0.20 tolerated(0.34) benign(0.064) TCGA-44-3918-01 5 26881641 26881641 G T CDH9 Silent p.T658T 0.09 TCGA-44-3918-01 5 31323321 31323321 C A CDH6 Missense_Mutation p.A760E 0.31 tolerated(0.08) benign(0.008) TCGA-44-3918-01 5 31541486 31541486 A G C5orf22 Silent p.V323V 0.08 TCGA-44-3918-01 5 32059401 32059401 C T PDZD2 Missense_Mutation p.P753S 0.15 deleterious(0) probably_damaging(1) TCGA-44-3918-01 5 33616054 33616054 C A ADAMTS12 Missense_Mutation p.G756V 0.07 deleterious(0) probably_damaging(0.984) TCGA-44-3918-01 5 34020750 34020750 G C C1QTNF3 Missense_Mutation p.L300V 0.07 tolerated(0.11) possibly_damaging(0.672) TCGA-44-3918-01 5 35670312 35670312 G T SPEF2 Missense_Mutation p.D503Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-44-3918-01 5 38496683 38496683 A G LIFR Silent p.N562N 0.11 TCGA-44-3918-01 5 41010084 41010084 G T MROH2B Missense_Mutation p.A1078D 0.27 deleterious(0) probably_damaging(0.976) TCGA-44-3918-01 5 43446492 43446492 C A C5orf28 Silent p.G160G 0.26 TCGA-44-3918-01 5 44310612 44310612 C A FGF10 Missense_Mutation p.V116L 0.41 deleterious(0.02) probably_damaging(0.946) TCGA-44-3918-01 5 476405 476405 C T SLC9A3 Missense_Mutation p.R660H 0.12 deleterious(0.03) possibly_damaging(0.548) TCGA-44-3918-01 5 5146295 5146295 C A ADAMTS16 Silent p.S76S 0.26 TCGA-44-3918-01 5 54423141 54423141 C A CDC20B Missense_Mutation p.M311I 0.09 deleterious(0.02) benign(0.049) TCGA-44-3918-01 5 54527452 54527452 C A CCNO Silent p.L268L 0.23 TCGA-44-3918-01 5 5460556 5460556 A G KIAA0947 Missense_Mutation p.Y370C 0.14 tolerated(0.16) possibly_damaging(0.672) TCGA-44-3918-01 5 5464516 5464516 G A KIAA0947 Missense_Mutation p.R1690H 0.26 tolerated(0.54) benign(0.002) TCGA-44-3918-01 5 55168222 55168222 G A IL31RA Missense_Mutation p.E133K 0.13 tolerated(0.42) benign(0.013) TCGA-44-3918-01 5 57755824 57755824 C A PLK2 5'UTR 0.11 TCGA-44-3918-01 5 58271639 58271639 C A PDE4D Missense_Mutation p.D620Y 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-3918-01 5 64492849 64492849 T A ADAMTS6 Missense_Mutation p.E902V 0.16 tolerated(0.25) benign(0.004) TCGA-44-3918-01 5 66460973 66460973 G T MAST4 Missense_Mutation p.R1989M 0.50 possibly_damaging(0.882) TCGA-44-3918-01 5 70308462 70308462 C G NAIP Missense_Mutation p.G94A 0.11 tolerated(0.17) benign(0.058) TCGA-44-3918-01 5 74063022 74063022 G A GFM2 5'UTR 0.25 TCGA-44-3918-01 5 75490762 75490762 G T SV2C Missense_Mutation p.G200V 0.21 deleterious(0.05) probably_damaging(0.995) TCGA-44-3918-01 5 7626390 7626390 C T ADCY2 Silent p.I227I 0.13 TCGA-44-3918-01 5 76749729 76749729 C G WDR41 Missense_Mutation p.D146H 0.09 tolerated(0.14) possibly_damaging(0.603) TCGA-44-3918-01 5 82836773 82836773 C A VCAN Missense_Mutation p.H2651N 0.10 tolerated(0.32) benign(0.01) TCGA-44-3918-01 5 82837228 82837228 C A VCAN Silent p.S2802S 0.11 TCGA-44-3918-01 5 82837640 82837640 G C VCAN Missense_Mutation p.V2940L 0.22 tolerated(1) benign(0.001) TCGA-44-3918-01 5 82849281 82849281 C A VCAN Missense_Mutation p.R3198S 0.19 deleterious(0) probably_damaging(0.958) TCGA-44-3918-01 6 10626804 10626804 G T GCNT2 Missense_Mutation p.Q391H 0.16 deleterious(0) probably_damaging(0.968) TCGA-44-3918-01 6 129511486 129511486 G T LAMA2 Missense_Mutation p.G535V 0.25 tolerated(0.1) benign(0.027) TCGA-44-3918-01 6 137815335 137815335 T A OLIG3 5'UTR 0.23 TCGA-44-3918-01 6 139355328 139355328 G C ABRACL Missense_Mutation p.V11L 0.26 tolerated(0.4) benign(0.009) TCGA-44-3918-01 6 146755806 146755806 C A GRM1 Missense_Mutation p.D1153E 0.34 deleterious_low_confidence(0.01) probably_damaging(0.984) TCGA-44-3918-01 6 152469245 152469245 G T SYNE1 Missense_Mutation p.P8304H 0.23 benign(0.001) TCGA-44-3918-01 6 153075344 153075344 C G VIP Missense_Mutation p.Q51E 0.11 tolerated(0.08) benign(0.008) TCGA-44-3918-01 6 154411019 154411019 G T OPRM1 Missense_Mutation p.A210S 0.21 tolerated(0.15) possibly_damaging(0.684) TCGA-44-3918-01 6 160466889 160466889 C G IGF2R Missense_Mutation p.N626K 0.14 deleterious(0) possibly_damaging(0.56) TCGA-44-3918-01 6 165863740 165863740 G T PDE10A Silent p.I112I 0.24 TCGA-44-3918-01 6 17764658 17764658 C A KIF13A Nonsense_Mutation p.E1701* 0.47 TCGA-44-3918-01 6 24843402 24843402 A T FAM65B Missense_Mutation p.D536E 0.46 tolerated(0.82) benign(0.003) TCGA-44-3918-01 6 26156561 26156561 T G HIST1H1E 5'UTR 0.46 TCGA-44-3918-01 6 26452326 26452326 C G BTN3A3 Missense_Mutation p.S481C 0.15 deleterious(0) possibly_damaging(0.779) TCGA-44-3918-01 6 29054813 29054813 G T OR2B3 Silent p.L71L 0.15 TCGA-44-3918-01 6 29454605 29454605 G A MAS1L Missense_Mutation p.H359Y 0.43 deleterious(0.04) benign(0) TCGA-44-3918-01 6 29640985 29640985 C A ZFP57 Missense_Mutation p.Q301H 0.13 tolerated(0.12) benign(0.2) TCGA-44-3918-01 6 30675547 30675547 C A MDC1 Missense_Mutation p.V937L 0.27 tolerated(0.26) benign(0.25) TCGA-44-3918-01 6 31129474 31129474 C T TCF19 Silent p.L163L 0.05 TCGA-44-3918-01 6 32164759 32164759 C G NOTCH4 Missense_Mutation p.D1715H 0.04 deleterious(0) probably_damaging(1) TCGA-44-3918-01 6 32260988 32260989 - T C6orf10 Frame_Shift_Ins p.E488Rfs*7 0.28 TCGA-44-3918-01 6 33037434 33037434 G A HLA-DPA1 Silent p.H110H 0.30 TCGA-44-3918-01 6 33170037 33170037 C A SLC39A7 Intron 0.18 TCGA-44-3918-01 6 33990499 33990499 G A GRM4 3'UTR 0.50 TCGA-44-3918-01 6 34024378 34024378 G T GRM4 Missense_Mutation p.H371N 0.33 tolerated(1) benign(0.005) TCGA-44-3918-01 6 34024379 34024379 G T GRM4 Missense_Mutation p.F370L 0.33 deleterious(0.01) possibly_damaging(0.492) TCGA-44-3918-01 6 38690781 38690781 C A DNAH8 5'Flank 0.11 TCGA-44-3918-01 6 41309566 41309566 C T NCR2 Silent p.R143R 0.10 TCGA-44-3918-01 6 42600433 42600433 G A UBR2 Silent p.Q475Q 0.25 TCGA-44-3918-01 6 43014108 43014108 C G CUL7 Missense_Mutation p.E926D 0.06 deleterious(0.03) probably_damaging(0.984) TCGA-44-3918-01 6 43106643 43106643 G T PTK7 Missense_Mutation p.G437C 0.26 deleterious(0) probably_damaging(1) TCGA-44-3918-01 6 43112186 43112186 C T PTK7 Intron 0.28 TCGA-44-3918-01 6 46190826 46190826 G A RCAN2 3'UTR 0.24 TCGA-44-3918-01 6 46803277 46803277 C A MEP1A Missense_Mutation p.A692E 0.26 deleterious(0) probably_damaging(0.987) TCGA-44-3918-01 6 49819733 49819733 G T CRISP1 Missense_Mutation p.A59D 0.40 deleterious(0) probably_damaging(0.999) TCGA-44-3918-01 6 51909775 51909775 G T PKHD1 Missense_Mutation p.Q902K 0.10 tolerated(0.26) benign(0.016) TCGA-44-3918-01 6 51909776 51909776 G T PKHD1 Missense_Mutation p.N901K 0.10 deleterious(0) possibly_damaging(0.844) TCGA-44-3918-01 6 56500450 56500450 C - DST Frame_Shift_Del p.K505Sfs*13 0.24 TCGA-44-3918-01 6 66044986 66044986 C A EYS Silent p.R551R 0.16 TCGA-44-3918-01 6 66094394 66094394 C G EYS Splice_Site p.X395_splice 0.23 TCGA-44-3918-01 6 70411384 70411384 C A LMBRD1 Missense_Mutation p.G345V 0.17 deleterious(0.03) possibly_damaging(0.451) TCGA-44-3918-01 6 70411385 70411385 C T LMBRD1 Missense_Mutation p.G345R 0.17 tolerated(0.05) benign(0.298) TCGA-44-3918-01 6 71235818 71235818 G C FAM135A Missense_Mutation p.E1011Q 0.17 tolerated(0.05) benign(0.028) TCGA-44-3918-01 6 72892193 72892193 C A RIMS1 Missense_Mutation p.A340E 0.19 tolerated(1) benign(0.056) TCGA-44-3918-01 6 73904317 73904317 C A KCNQ5 Missense_Mutation p.P679H 0.24 deleterious(0) probably_damaging(0.95) TCGA-44-3918-01 6 76423247 76423247 G T SENP6 Missense_Mutation p.M976I 0.15 deleterious(0) possibly_damaging(0.505) TCGA-44-3918-01 6 76744429 76744429 C A IMPG1 Missense_Mutation p.W126L 0.38 deleterious(0) probably_damaging(0.999) TCGA-44-3918-01 6 76744430 76744430 A C IMPG1 Missense_Mutation p.W126G 0.40 deleterious(0) probably_damaging(0.999) TCGA-44-3918-01 6 84569531 84569531 G T CYB5R4 Silent p.P10P 0.12 TCGA-44-3918-01 6 84569532 84569532 G T CYB5R4 Missense_Mutation p.A11S 0.11 tolerated(0.12) benign(0.071) TCGA-44-3918-01 6 90572173 90572173 G T CASP8AP2 RNA 0.11 TCGA-44-3918-01 6 90660326 90660326 C A BACH2 Missense_Mutation p.C500F 0.19 deleterious(0) probably_damaging(0.999) TCGA-44-3918-01 7 100184162 100184162 G C FBXO24 5'Flank 0.20 TCGA-44-3918-01 7 100677490 100677490 C - MUC17 Frame_Shift_Del p.D931Efs*6 0.26 TCGA-44-3918-01 7 100731029 100731029 G T TRIM56 Missense_Mutation p.V146L 0.15 tolerated(0.06) possibly_damaging(0.529) TCGA-44-3918-01 7 100732256 100732256 G T TRIM56 Missense_Mutation p.V555L 0.17 tolerated(0.12) probably_damaging(0.994) TCGA-44-3918-01 7 103270408 103270408 C T RELN Missense_Mutation p.C894Y 0.15 deleterious(0) benign(0.012) TCGA-44-3918-01 7 107431524 107431524 G T SLC26A3 Missense_Mutation p.A180E 0.14 deleterious(0.05) possibly_damaging(0.548) TCGA-44-3918-01 7 107720070 107720070 G T LAMB4 Silent p.T621T 0.09 TCGA-44-3918-01 7 107864184 107864184 C G NRCAM Missense_Mutation p.C292S 0.26 deleterious(0.01) probably_damaging(0.929) TCGA-44-3918-01 7 113518304 113518304 G T PPP1R3A Missense_Mutation p.T948K 0.11 deleterious(0.05) possibly_damaging(0.562) TCGA-44-3918-01 7 114619570 114619570 A T MDFIC Missense_Mutation p.Q185L 0.28 deleterious(0.02) possibly_damaging(0.886) TCGA-44-3918-01 7 123594257 123594257 G A SPAM1 Silent p.R211R 0.22 TCGA-44-3918-01 7 126173450 126173450 G A GRM8 Silent p.S662S 0.11 TCGA-44-3918-01 7 127341286 127341286 G T SND1 Missense_Mutation p.E166D 0.11 tolerated(0.65) benign(0.017) TCGA-44-3918-01 7 127341287 127341287 G T SND1 Missense_Mutation p.G167W 0.11 deleterious(0) possibly_damaging(0.825) TCGA-44-3918-01 7 129770576 129770576 G T KLHDC10 Missense_Mutation p.R440L 0.29 deleterious(0) probably_damaging(0.979) TCGA-44-3918-01 7 131825444 131825444 C A PLXNA4 Silent p.T1784T 0.07 TCGA-44-3918-01 7 134632264 134632264 C G CALD1 Missense_Mutation p.P513R 0.33 tolerated(0.28) unknown(0) TCGA-44-3918-01 7 134873250 134873250 C - WDR91 Frame_Shift_Del p.E606Rfs*77 0.25 TCGA-44-3918-01 7 135614761 135614761 C A MTPN Splice_Site p.X91_splice 0.14 TCGA-44-3918-01 7 137075948 137075948 T A DGKI 3'UTR 0.06 TCGA-44-3918-01 7 137782616 137782616 G T AKR1D1 Missense_Mutation p.G128V 0.41 deleterious(0) probably_damaging(1) TCGA-44-3918-01 7 140534575 140534575 C A BRAF Missense_Mutation p.S113I 0.12 deleterious(0.03) benign(0.05) TCGA-44-3918-01 7 142231632 142231632 G T TRBV10-1 Silent p.L95L 0.13 TCGA-44-3918-01 7 142568609 142568609 C A EPHB6 Silent p.I1006I 0.24 TCGA-44-3918-01 7 142659377 142659377 C G KEL 5'UTR 0.18 TCGA-44-3918-01 7 143000892 143000892 G T CASP2 Missense_Mutation p.G328V 0.30 deleterious(0) probably_damaging(1) TCGA-44-3918-01 7 143632387 143632387 G A OR2F2 Nonsense_Mutation p.W21* 0.14 TCGA-44-3918-01 7 143807534 143807534 C A OR2A2 Missense_Mutation p.L287M 0.13 deleterious(0.03) possibly_damaging(0.636) TCGA-44-3918-01 7 144060506 144060506 G T ARHGEF5 Missense_Mutation p.E248D 0.15 tolerated(0.1) benign(0.416) TCGA-44-3918-01 7 14775721 14775722 - T DGKB Frame_Shift_Ins p.N89Kfs*7 0.18 TCGA-44-3918-01 7 149483252 149483252 G T SSPO RNA 0.44 TCGA-44-3918-01 7 151856107 151856108 - A KMT2C Frame_Shift_Ins p.L3837Ffs*9 0.11 TCGA-44-3918-01 7 156971381 156971381 C T UBE3C Intron 0.20 TCGA-44-3918-01 7 18067478 18067481 GACT TA PRPS1L1 5'UTR 0.56 TCGA-44-3918-01 7 18687497 18687497 C A HDAC9 Silent p.I375I 0.10 TCGA-44-3918-01 7 20685634 20685634 T C ABCB5 Missense_Mutation p.I285T 0.10 tolerated(0.07) benign(0.042) TCGA-44-3918-01 7 21747331 21747331 G A DNAH11 Silent p.L2194L 0.13 TCGA-44-3918-01 7 23299711 23299711 G T GPNMB Silent p.R218R 0.20 TCGA-44-3918-01 7 24705683 24705683 G T MPP6 Missense_Mutation p.M309I 0.17 tolerated(0.28) benign(0.009) TCGA-44-3918-01 7 26237076 26237076 C G HNRNPA2B1 Missense_Mutation p.M53I 0.08 tolerated(0.22) benign(0.036) TCGA-44-3918-01 7 27140602 27140602 G T HOXA2 Missense_Mutation p.P292T 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-44-3918-01 7 27195972 27195972 G T HOXA7 Missense_Mutation p.P65T 0.15 tolerated(0.34) possibly_damaging(0.879) TCGA-44-3918-01 7 28031601 28031601 C G JAZF1 Splice_Site p.X39_splice 0.10 TCGA-44-3918-01 7 29980336 29980336 T A SCRN1 Missense_Mutation p.D254V 0.20 tolerated(0.25) benign(0.175) TCGA-44-3918-01 7 31862793 31862793 G T PDE1C Silent p.A552A 0.13 TCGA-44-3918-01 7 31862794 31862794 G T PDE1C Missense_Mutation p.A552D 0.14 tolerated(0.2) benign(0.06) TCGA-44-3918-01 7 43918845 43918845 G A URGCP Missense_Mutation p.L73F 0.21 tolerated(0.19) possibly_damaging(0.548) TCGA-44-3918-01 7 44118364 44118364 C A POLM Missense_Mutation p.R230L 0.06 tolerated(0.9) benign(0) TCGA-44-3918-01 7 45662261 45662261 G T ADCY1 Silent p.T313T 0.27 TCGA-44-3918-01 7 45726179 45726179 G T ADCY1 Silent p.P787P 0.22 TCGA-44-3918-01 7 45931536 45931536 C A IGFBP1 Silent p.P175P 0.12 TCGA-44-3918-01 7 4826038 4826038 G C AP5Z1 Missense_Mutation p.L430F 0.06 tolerated(0.06) possibly_damaging(0.712) TCGA-44-3918-01 7 48316041 48316041 A G ABCA13 Missense_Mutation p.I2260V 0.23 benign(0.004) TCGA-44-3918-01 7 57188238 57188238 C A ZNF479 Missense_Mutation p.R295I 0.12 deleterious(0.02) possibly_damaging(0.797) TCGA-44-3918-01 7 63726798 63726798 A G ZNF679 Missense_Mutation p.T263A 0.14 tolerated(0.07) benign(0.218) TCGA-44-3918-01 7 64004766 64004766 C A ZNF680 Missense_Mutation p.E25D 0.09 deleterious(0.02) possibly_damaging(0.86) TCGA-44-3918-01 7 64388164 64388164 C T ZNF273 Missense_Mutation p.A153V 0.26 tolerated(1) benign(0.001) TCGA-44-3918-01 7 64388706 64388706 A T ZNF273 Missense_Mutation p.T334S 0.13 tolerated(0.18) benign(0.007) TCGA-44-3918-01 7 74470143 74470143 C A WBSCR16 Missense_Mutation p.G366W 0.22 deleterious(0) probably_damaging(1) TCGA-44-3918-01 7 78131078 78131078 C T MAGI2 Missense_Mutation p.A261T 0.15 tolerated(1) benign(0.002) TCGA-44-3918-01 7 81359038 81359038 C A HGF Missense_Mutation p.G308V 0.08 deleterious(0) possibly_damaging(0.903) TCGA-44-3918-01 7 81689761 81689761 A T CACNA2D1 Missense_Mutation p.F288I 0.10 deleterious(0) possibly_damaging(0.903) TCGA-44-3918-01 7 82387844 82387844 G A PCLO 3'UTR 0.06 TCGA-44-3918-01 7 82580055 82580055 C A PCLO Missense_Mutation p.Q3283H 0.14 unknown(0) TCGA-44-3918-01 7 86394633 86394633 G A GRM3 Missense_Mutation p.G58R 0.06 deleterious(0) probably_damaging(1) TCGA-44-3918-01 7 86820288 86820288 A T DMTF1 Missense_Mutation p.D480V 0.11 deleterious(0) possibly_damaging(0.682) TCGA-44-3918-01 7 88963101 88963101 G T ZNF804B Missense_Mutation p.A269S 0.15 tolerated(0.25) benign(0.139) TCGA-44-3918-01 7 97619369 97619369 G T OCM2 Silent p.L16L 0.07 TCGA-44-3918-01 7 98445783 98445783 C T TMEM130 Missense_Mutation p.G402R 0.26 tolerated(0.71) possibly_damaging(0.628) TCGA-44-3918-01 7 98643368 98643368 C A SMURF1 Missense_Mutation p.M429I 0.28 deleterious(0.03) benign(0.04) TCGA-44-3918-01 7 99758146 99758146 C G GAL3ST4 Missense_Mutation p.W289S 0.12 tolerated(0.18) benign(0.082) TCGA-44-3918-01 7 99773279 99773279 G T GPC2 Nonsense_Mutation p.Y188* 0.09 TCGA-44-3918-01 8 101075955 101075955 A G RGS22 Silent p.N347N 0.11 TCGA-44-3918-01 8 103664175 103664175 G A KLF10 Missense_Mutation p.H129Y 0.08 tolerated(1) benign(0.001) TCGA-44-3918-01 8 104065051 104065051 G T ATP6V1C1 Splice_Site p.X158_splice 0.08 TCGA-44-3918-01 8 105405219 105405219 C G DPYS Missense_Mutation p.R412S 0.05 deleterious(0) probably_damaging(0.998) TCGA-44-3918-01 8 106573666 106573666 G T ZFPM2 Missense_Mutation p.W126L 0.06 deleterious(0) probably_damaging(0.997) TCGA-44-3918-01 8 10755411 10755411 T C XKR6 3'UTR 0.16 TCGA-44-3918-01 8 110099840 110099840 C T TRHR Silent p.L33L 0.06 TCGA-44-3918-01 8 110255375 110255375 C G NUDCD1 Missense_Mutation p.V539L 0.06 deleterious(0.01) benign(0.446) TCGA-44-3918-01 8 110346578 110346578 G C ENY2 5'UTR 0.12 TCGA-44-3918-01 8 113241048 113241048 G A CSMD3 Missense_Mutation p.A3634V 0.44 deleterious(0) possibly_damaging(0.718) TCGA-44-3918-01 8 113246653 113246653 C A CSMD3 Missense_Mutation p.V3561L 0.08 deleterious(0.02) benign(0) TCGA-44-3918-01 8 113323338 113323338 C A CSMD3 Missense_Mutation p.G2585V 0.10 deleterious(0.02) probably_damaging(0.995) TCGA-44-3918-01 8 113323339 113323339 C A CSMD3 Missense_Mutation p.G2585C 0.10 deleterious(0) probably_damaging(0.998) TCGA-44-3918-01 8 113697661 113697661 C A CSMD3 Missense_Mutation p.G819V 0.09 deleterious(0.01) probably_damaging(1) TCGA-44-3918-01 8 124989713 124989713 C A FER1L6 Silent p.I309I 0.07 TCGA-44-3918-01 8 125074234 125074234 G T FER1L6 Missense_Mutation p.A1097S 0.38 tolerated(0.21) benign(0.009) TCGA-44-3918-01 8 125535238 125535238 C A TATDN1 Missense_Mutation p.G10C 0.17 deleterious(0) probably_damaging(0.999) TCGA-44-3918-01 8 131896902 131896902 G T ADCY8 Missense_Mutation p.H673N 0.14 tolerated(0.13) benign(0.017) TCGA-44-3918-01 8 133925417 133925417 C T TG Missense_Mutation p.H1429Y 0.07 deleterious(0.04) benign(0.177) TCGA-44-3918-01 8 134025908 134025908 G C TG Missense_Mutation p.C2154S 0.11 deleterious(0) probably_damaging(0.999) TCGA-44-3918-01 8 141567245 141567245 G A AGO2 Silent p.P323P 0.08 TCGA-44-3918-01 8 143570778 143570778 C T BAI1 Silent p.I870I 0.35 TCGA-44-3918-01 8 144621345 144621345 G A ZC3H3 Silent p.S64S 0.43 TCGA-44-3918-01 8 144642025 144642025 C T GSDMD Missense_Mutation p.P99L 0.33 tolerated(0.24) benign(0.015) TCGA-44-3918-01 8 144990539 144990539 C A PLEC Missense_Mutation p.G4621C 0.07 unknown(0) TCGA-44-3918-01 8 145150838 145150838 C G CYC1 Missense_Mutation p.L78V 0.08 tolerated(0.13) possibly_damaging(0.45) TCGA-44-3918-01 8 2054354 2054354 G T MYOM2 Nonsense_Mutation p.G989* 0.22 TCGA-44-3918-01 8 25226115 25226115 C T DOCK5 Silent p.S1104S 0.19 TCGA-44-3918-01 8 30209576 30209576 C A TUBBP1 RNA 0.23 TCGA-44-3918-01 8 30703267 30703267 C A TEX15 Silent p.V1089V 0.12 TCGA-44-3918-01 8 33246764 33246764 C G FUT10 Missense_Mutation p.S310T 0.36 tolerated(0.23) benign(0.084) TCGA-44-3918-01 8 35583833 35583833 C T UNC5D Silent p.F489F 0.19 TCGA-44-3918-01 8 37692865 37692865 C T GPR124 Silent p.F594F 0.44 TCGA-44-3918-01 8 39535050 39535050 A G ADAM18 Silent p.E542E 0.29 TCGA-44-3918-01 8 41548014 41548014 T A ANK1 Missense_Mutation p.N1362I 0.51 deleterious(0) probably_damaging(0.915) TCGA-44-3918-01 8 43147871 43147871 G C POTEA RNA 0.28 TCGA-44-3918-01 8 51449291 51449291 G C SNTG1 Missense_Mutation p.K201N 0.42 deleterious(0.05) probably_damaging(0.994) TCGA-44-3918-01 8 62370920 62370920 T G CLVS1 Missense_Mutation p.F266V 0.25 tolerated(0.14) benign(0.002) TCGA-44-3918-01 8 68334754 68334754 T C CPA6 Silent p.L433L 0.13 TCGA-44-3918-01 8 70617325 70617325 T C SLCO5A1 Silent p.L521L 0.12 TCGA-44-3918-01 8 72184058 72184058 C A EYA1 Missense_Mutation p.G301W 0.09 tolerated(0.05) benign(0.019) TCGA-44-3918-01 8 73993286 73993286 G T SBSPON Missense_Mutation p.T126N 0.33 tolerated(0.41) benign(0.156) TCGA-44-3918-01 8 74464373 74464373 G A STAU2 Silent p.L468L 0.05 TCGA-44-3918-01 8 76470801 76470801 G T HNF4G Missense_Mutation p.R251L 0.50 deleterious(0.05) benign(0.035) TCGA-44-3918-01 8 76472578 76472578 G T HNF4G Splice_Site p.X365_splice 0.35 TCGA-44-3918-01 8 77616672 77616672 A T ZFHX4 Missense_Mutation p.S117C 0.05 possibly_damaging(0.843) TCGA-44-3918-01 8 8560394 8560394 G T CLDN23 Silent p.L162L 0.20 TCGA-44-3918-01 8 89128873 89128873 C A MMP16 Missense_Mutation p.D316Y 0.07 deleterious(0.03) benign(0.388) TCGA-44-3918-01 8 92330508 92330508 C A SLC26A7 Missense_Mutation p.A181E 0.06 deleterious(0) probably_damaging(0.977) TCGA-44-3918-01 8 92364058 92364058 C A SLC26A7 Nonsense_Mutation p.C387* 0.29 TCGA-44-3918-01 9 101748080 101748080 G T COL15A1 Missense_Mutation p.D112Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-44-3918-01 9 114156454 114156454 G A KIAA0368 Missense_Mutation p.H1148Y 0.24 tolerated(0.08) benign(0.036) TCGA-44-3918-01 9 114176853 114176853 C A KIAA0368 Missense_Mutation p.D793Y 0.19 deleterious(0) probably_damaging(0.964) TCGA-44-3918-01 9 116276913 116276913 G T RGS3 Silent p.L551L 0.18 TCGA-44-3918-01 9 117666507 117666507 C A TNFSF8 Missense_Mutation p.G137C 0.09 deleterious(0) probably_damaging(1) TCGA-44-3918-01 9 119943389 119943389 C A ASTN2 Intron 0.44 TCGA-44-3918-01 9 120176788 120176788 G T ASTN2 Silent p.P143P 0.09 TCGA-44-3918-01 9 12694303 12694303 G T TYRP1 Missense_Mutation p.G103C 0.09 deleterious(0) probably_damaging(0.96) TCGA-44-3918-01 9 131369912 131369912 G T SPTAN1 Missense_Mutation p.R1359L 0.26 tolerated(0.33) benign(0.019) TCGA-44-3918-01 9 133951287 133951287 C T LAMC3 Silent p.Y1188Y 0.48 TCGA-44-3918-01 9 135042221 135042221 G T NTNG2 Translation_Start_Site p.M1? 0.12 deleterious_low_confidence(0.01) unknown(0) TCGA-44-3918-01 9 135521285 135521285 C A DDX31 Missense_Mutation p.Q564H 0.53 deleterious(0.02) probably_damaging(1) TCGA-44-3918-01 9 135926314 135926314 G A GTF3C5 Silent p.R239R 0.07 TCGA-44-3918-01 9 135933328 135933328 T C GTF3C5 Silent p.S514S 0.08 TCGA-44-3918-01 9 136220842 136220842 C T SURF1 Intron 0.56 TCGA-44-3918-01 9 139658873 139658873 A T LCN15 Missense_Mutation p.L23Q 0.38 tolerated(0.16) probably_damaging(0.94) TCGA-44-3918-01 9 140729344 140729344 A C EHMT1 Missense_Mutation p.Q1279P 0.31 tolerated(0.39) benign(0.004) TCGA-44-3918-01 9 21367390 21367390 G T IFNA13 3'UTR 0.14 TCGA-44-3918-01 9 33442495 33442495 T C AQP3 Missense_Mutation p.I172V 0.11 tolerated(0.14) benign(0.039) TCGA-44-3918-01 9 33917170 33917170 G A UBE2R2 Missense_Mutation p.E218K 0.19 tolerated(0.22) unknown(0) TCGA-44-3918-01 9 35062999 35062999 C A VCP Nonsense_Mutation p.G263* 0.10 TCGA-44-3918-01 9 35102251 35102251 T A STOML2 Intron 0.19 TCGA-44-3918-01 9 35676078 35676078 C G CA9 Missense_Mutation p.P208A 0.16 deleterious(0.05) benign(0.114) TCGA-44-3918-01 9 35853628 35853628 G T TMEM8B Missense_Mutation p.D404Y 0.07 deleterious(0) possibly_damaging(0.832) TCGA-44-3918-01 9 36966699 36966699 C T PAX5 Silent p.P209P 0.10 TCGA-44-3918-01 9 37785051 37785051 C T EXOSC3 5'UTR 0.23 TCGA-44-3918-01 9 40702836 40702836 C A SPATA31A3 Missense_Mutation p.L165M 0.09 deleterious(0.01) probably_damaging(0.934) TCGA-44-3918-01 9 43629302 43629302 G T SPATA31A6 Silent p.R70R 0.04 TCGA-44-3918-01 9 5339540 5339540 C A RLN1 Silent p.V69V 0.14 TCGA-44-3918-01 9 5534754 5534754 C A PDCD1LG2 Missense_Mutation p.T22K 0.22 deleterious(0.01) possibly_damaging(0.833) TCGA-44-3918-01 9 6328619 6328619 C G TPD52L3 Silent p.T8T 0.08 TCGA-44-3918-01 9 6534752 6534752 G T GLDC Missense_Mutation p.H959N 0.09 tolerated(0.41) benign(0) TCGA-44-3918-01 9 6893233 6893233 G C KDM4C Splice_Site p.X307_splice 0.06 TCGA-44-3918-01 9 71006561 71006561 A T PGM5 Missense_Mutation p.N270I 0.15 deleterious(0) probably_damaging(1) TCGA-44-3918-01 9 73424894 73424894 A G TRPM3 Intron 0.08 TCGA-44-3918-01 9 84530530 84530530 C A SPATA31D5P RNA 0.18 TCGA-44-3918-01 9 84530687 84530687 C A SPATA31D5P RNA 0.06 TCGA-44-3918-01 9 84532176 84532176 A G SPATA31D5P RNA 0.12 TCGA-44-3918-01 9 84564780 84564780 C A RP11-383M4.6 Intron 0.36 TCGA-44-3918-01 9 8633443 8633443 C T PTPRD Missense_Mutation p.D76N 0.11 tolerated(0.13) probably_damaging(0.97) TCGA-44-3918-01 9 88651390 88651390 C A GOLM1 Silent p.L210L 0.10 TCGA-44-3918-01 9 94487290 94487290 C A ROR2 Missense_Mutation p.A496S 0.27 tolerated(0.51) benign(0.002) TCGA-44-3918-01 X 10096092 10096092 C T WWC3 Missense_Mutation p.S724F 0.14 deleterious(0.04) benign(0.188) TCGA-44-3918-01 X 101623784 101623784 C A NXF2B Missense_Mutation p.C193F 0.05 tolerated(0.46) benign(0.012) TCGA-44-3918-01 X 103080189 103080189 C G RAB9B Missense_Mutation p.E176Q 0.10 tolerated(0.09) possibly_damaging(0.841) TCGA-44-3918-01 X 106486460 106486460 C A PIH1D3 Missense_Mutation p.P193T 0.36 tolerated(0.6) benign(0.016) TCGA-44-3918-01 X 107403709 107403709 G T COL4A6 Silent p.A1504A 0.26 TCGA-44-3918-01 X 107434641 107434641 C A COL4A6 Missense_Mutation p.G436C 0.25 unknown(0) TCGA-44-3918-01 X 114082720 114082720 G T HTR2C Silent p.R168R 0.10 TCGA-44-3918-01 X 119211112 119211112 C - RHOXF2B Frame_Shift_Del p.G74Afs*98 0.17 TCGA-44-3918-01 X 123516528 123516528 G T TENM1 Missense_Mutation p.P2478T 0.35 tolerated(0.29) benign(0.013) TCGA-44-3918-01 X 125299720 125299720 C A DCAF12L2 Missense_Mutation p.R63L 0.17 tolerated(0.09) benign(0.091) TCGA-44-3918-01 X 130222674 130222674 C A ARHGAP36 Missense_Mutation p.P520H 0.14 deleterious(0.03) benign(0.303) TCGA-44-3918-01 X 132351801 132351801 G T TFDP3 Missense_Mutation p.R163S 0.28 deleterious(0.02) benign(0.018) TCGA-44-3918-01 X 132730525 132730525 T A GPC3 Missense_Mutation p.I529F 0.13 tolerated_low_confidence(0.33) benign(0.37) TCGA-44-3918-01 X 134303589 134303589 G A CT55 Silent p.L70L 0.19 TCGA-44-3918-01 X 140984513 140984513 G T MAGEC3 Intron 0.32 TCGA-44-3918-01 X 141291520 141291520 C A MAGEC2 Missense_Mutation p.S85I 0.29 tolerated(0.12) benign(0.106) TCGA-44-3918-01 X 142795594 142795594 C A SPANXN2 Missense_Mutation p.Q28H 0.15 tolerated_low_confidence(0.06) probably_damaging(0.995) TCGA-44-3918-01 X 144337437 144337437 G T SPANXN1 3'UTR 0.40 TCGA-44-3918-01 X 144909468 144909468 C A TMEM257 Silent p.A91A 0.42 TCGA-44-3918-01 X 151820222 151820222 C A GABRQ Missense_Mutation p.Q379K 0.37 deleterious(0.02) benign(0.055) TCGA-44-3918-01 X 152815041 152815041 G T ATP2B3 Silent p.T475T 0.09 TCGA-44-3918-01 X 152815042 152815042 G T ATP2B3 Missense_Mutation p.G476C 0.09 deleterious(0) probably_damaging(0.999) TCGA-44-3918-01 X 152914893 152914893 C A DUSP9 Missense_Mutation p.P194T 0.27 tolerated(0.59) benign(0.002) TCGA-44-3918-01 X 153130956 153130956 C A L1CAM Splice_Site p.X850_splice 0.31 TCGA-44-3918-01 X 153135306 153135306 T A L1CAM Missense_Mutation p.R359W 0.37 deleterious(0.02) probably_damaging(0.997) TCGA-44-3918-01 X 153224149 153224149 C T HCFC1 Silent p.K558K 0.11 TCGA-44-3918-01 X 153664270 153664270 G A ATP6AP1 3'UTR 0.08 TCGA-44-3918-01 X 31514907 31514907 T C DMD Missense_Mutation p.R2849G 0.17 benign(0.291) TCGA-44-3918-01 X 3261795 3261795 C A MXRA5 Missense_Mutation p.C27F 0.09 deleterious(0) probably_damaging(0.999) TCGA-44-3918-01 X 34148158 34148158 C G FAM47A Missense_Mutation p.K746N 0.16 deleterious(0) probably_damaging(0.978) TCGA-44-3918-01 X 49958170 49958170 C A AKAP4 Missense_Mutation p.M398I 0.12 deleterious(0) probably_damaging(0.996) TCGA-44-3918-01 X 50051724 50051724 G T CCNB3 Missense_Mutation p.E185D 0.20 tolerated(0.53) benign(0.039) TCGA-44-3918-01 X 63411430 63411430 C A AMER1 Missense_Mutation p.E579D 0.22 tolerated(0.06) possibly_damaging(0.889) TCGA-44-3918-01 X 64138864 64138864 C A ZC4H2 Intron 0.17 TCGA-44-3918-01 X 70597538 70597538 A C TAF1 Missense_Mutation p.H287P 0.10 tolerated(0.11) benign(0.305) TCGA-44-3918-01 X 74284929 74284929 C T ABCB7 Missense_Mutation p.G604R 0.07 deleterious(0) probably_damaging(0.996) TCGA-44-3918-01 X 78622739 78622739 G T ITM2A 5'UTR 0.27 TCGA-44-3918-01 X 79277767 79277767 G T TBX22 5'UTR 0.11 TCGA-44-3918-01 X 79698195 79698195 G A FAM46D Missense_Mutation p.G53R 0.22 tolerated(0.21) benign(0.008) TCGA-44-3918-01 X 85906144 85906144 A G DACH2 Missense_Mutation p.E249G 0.24 deleterious(0) benign(0.119) TCGA-44-3918-01 X 91134030 91134030 G T PCDH11X Missense_Mutation p.D931Y 0.13 deleterious(0.02) probably_damaging(0.981) TCGA-44-3918-01 X 9673035 9673035 C A TBL1X Missense_Mutation p.P373T 0.13 deleterious(0.01) probably_damaging(0.97) TCGA-44-3918-01 X 9862978 9862978 G T SHROOM2 Missense_Mutation p.A344S 0.14 tolerated(0.18) benign(0.02) TCGA-44-3918-01 X 99551693 99551693 G T PCDH19 Missense_Mutation p.P1010H 0.30 deleterious(0.05) benign(0.139) TCGA-44-3919-01 10 59986896 59986896 T G IPMK Missense_Mutation p.Y94S 0.16 deleterious(0) benign(0.007) TCGA-44-3919-01 10 76910777 76910777 G C SAMD8 Missense_Mutation p.G164A 0.05 tolerated(0.09) benign(0.082) TCGA-44-3919-01 11 47261647 47261647 G A ACP2 3'UTR 0.20 TCGA-44-3919-01 11 72535874 72535874 C T ATG16L2 Missense_Mutation p.A328V 0.21 tolerated(0.29) benign(0.039) TCGA-44-3919-01 12 32955458 32955458 C T PKP2 Silent p.Q726Q 0.03 TCGA-44-3919-01 12 93100418 93100423 CAGAGT - C12orf74 In_Frame_Del p.E5_S6del 0.21 TCGA-44-3919-01 13 32972777 32972777 C G BRCA2 Nonsense_Mutation p.S3376* 0.05 TCGA-44-3919-01 13 52742098 52742099 - A MRPS31P5 RNA 0.16 TCGA-44-3919-01 14 24901931 24901931 T - KHNYN Frame_Shift_Del p.H451Qfs*27 0.24 TCGA-44-3919-01 15 52258273 52258273 C T LEO1 Missense_Mutation p.D163N 0.03 deleterious_low_confidence(0.03) possibly_damaging(0.511) TCGA-44-3919-01 16 29816619 29816619 T C KIF22 Silent p.C662C 0.20 TCGA-44-3919-01 16 74496473 74496473 G T GLG1 Missense_Mutation p.F949L 0.24 tolerated(0.16) possibly_damaging(0.835) TCGA-44-3919-01 17 27413574 27413574 C G MYO18A Missense_Mutation p.E1912Q 0.05 deleterious(0.03) possibly_damaging(0.809) TCGA-44-3919-01 17 35344013 35344013 A G AATF Silent p.T310T 0.21 TCGA-44-3919-01 17 39675117 39675117 C G KRT15 5'UTR 0.15 TCGA-44-3919-01 17 42453323 42453323 C T ITGA2B Missense_Mutation p.G827S 0.05 deleterious(0.01) probably_damaging(0.967) TCGA-44-3919-01 17 4719995 4719995 C G PLD2 Missense_Mutation p.S512R 0.23 deleterious(0.01) benign(0.418) TCGA-44-3919-01 18 13826656 13826656 C T MC5R Missense_Mutation p.R298C 0.23 deleterious(0.01) benign(0.038) TCGA-44-3919-01 18 70416305 70416305 A G NETO1 Silent p.S520S 0.17 TCGA-44-3919-01 18 9275652 9275652 C T ANKRD12 Missense_Mutation p.P1965L 0.22 deleterious(0) probably_damaging(1) TCGA-44-3919-01 19 3612168 3612168 T A CACTIN Missense_Mutation p.K677M 0.03 deleterious(0) probably_damaging(0.999) TCGA-44-3919-01 19 44732557 44732557 G C ZNF227 Intron 0.06 TCGA-44-3919-01 19 45998365 45998365 C G RTN2 Missense_Mutation p.D23H 0.03 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-44-3919-01 19 48949420 48949420 C T GRWD1 Missense_Mutation p.A53V 0.21 tolerated(0.06) probably_damaging(0.999) TCGA-44-3919-01 19 8922322 8922322 G A ZNF558 Missense_Mutation p.H282Y 0.23 deleterious(0) probably_damaging(0.996) TCGA-44-3919-01 1 103491388 103491388 G C COL11A1 Intron 0.03 TCGA-44-3919-01 1 155162639 155162639 G A MUC1 5'UTR 0.14 TCGA-44-3919-01 1 227921232 227921232 G C JMJD4 Silent p.L281L 0.10 TCGA-44-3919-01 1 3319367 3319367 T C PRDM16 Missense_Mutation p.F230S 0.23 deleterious(0.01) benign(0.14) TCGA-44-3919-01 20 21689285 21689285 G T PAX1 Missense_Mutation p.A336S 0.39 tolerated_low_confidence(0.09) benign(0.018) TCGA-44-3919-01 20 33575404 33575404 C A MYH7B Missense_Mutation p.L440I 0.36 probably_damaging(0.95) TCGA-44-3919-01 21 35260596 35260596 G A ITSN1 Missense_Mutation p.E1720K 0.25 deleterious_low_confidence(0.01) benign(0.222) TCGA-44-3919-01 21 46012384 46012384 G C KRTAP10-6 5'UTR 0.05 TCGA-44-3919-01 21 46057394 46057394 C T KRTAP10-10 Silent p.V20V 0.16 TCGA-44-3919-01 22 19839364 19839364 C A C22orf29 Nonsense_Mutation p.E141* 0.04 TCGA-44-3919-01 22 20128410 20128410 C T ZDHHC8 Missense_Mutation p.P257S 0.17 tolerated(0.23) probably_damaging(0.999) TCGA-44-3919-01 22 37462203 37462203 G A TMPRSS6 Silent p.L785L 0.30 TCGA-44-3919-01 2 106713239 106713239 C - UXS1 Frame_Shift_Del p.D361Mfs*15 0.14 TCGA-44-3919-01 2 234638177 234638177 G T UGT1A3 Missense_Mutation p.E135D 0.24 tolerated(0.13) benign(0.158) TCGA-44-3919-01 2 44571027 44571027 A G PREPL Missense_Mutation p.I158T 0.28 deleterious(0) probably_damaging(0.969) TCGA-44-3919-01 2 54895769 54895769 C G SPTBN1 3'UTR 0.38 TCGA-44-3919-01 3 101476618 101476618 G A CEP97 Missense_Mutation p.D390N 0.19 deleterious(0) probably_damaging(0.989) TCGA-44-3919-01 3 109027921 109027921 G A DPPA2 Silent p.I116I 0.03 TCGA-44-3919-01 3 142681704 142681704 C T PAQR9 Missense_Mutation p.A159T 0.16 deleterious(0.03) probably_damaging(0.994) TCGA-44-3919-01 3 148586705 148586705 G C CPA3 Missense_Mutation p.D50H 0.03 deleterious(0) probably_damaging(0.996) TCGA-44-3919-01 4 140641170 140641170 C G MAML3 Silent p.G908G 0.22 TCGA-44-3919-01 4 48636353 48636353 A C FRYL Silent p.A25A 0.26 TCGA-44-3919-01 4 76452395 76452395 G C THAP6 Missense_Mutation p.E214Q 0.03 deleterious_low_confidence(0.04) benign(0.166) TCGA-44-3919-01 4 77969418 77969418 C T CCNI Missense_Mutation p.G363E 0.05 tolerated(0.3) probably_damaging(0.952) TCGA-44-3919-01 5 118482991 118482991 G A DMXL1 Missense_Mutation p.E913K 0.04 tolerated(0.53) benign(0.005) TCGA-44-3919-01 5 140581561 140581561 C T PCDHB11 Silent p.D738D 0.03 TCGA-44-3919-01 5 171765853 171765853 C T SH3PXD2B Silent p.Q752Q 0.13 TCGA-44-3919-01 5 175959120 175959120 C T RNF44 Missense_Mutation p.R61Q 0.21 tolerated(0.64) benign(0) TCGA-44-3919-01 5 22078683 22078683 G T CDH12 Missense_Mutation p.P35T 0.03 tolerated(0.18) benign(0.017) TCGA-44-3919-01 5 5191834 5191834 G A ADAMTS16 Missense_Mutation p.R415H 0.03 deleterious(0) probably_damaging(0.999) TCGA-44-3919-01 5 73163796 73163796 G A ARHGEF28 Missense_Mutation p.G750R 0.29 tolerated(0.53) benign(0.091) TCGA-44-3919-01 6 142409491 142409491 G C NMBR Missense_Mutation p.S102W 0.05 deleterious(0) probably_damaging(0.991) TCGA-44-3919-01 6 76063272 76063272 C T FILIP1 Silent p.L204L 0.21 TCGA-44-3919-01 7 100030533 100030551 TGCCCTCAGGGTAATTATG - MEPCE Splice_Site p.X558_splice 0.15 TCGA-44-3919-01 7 107416986 107416986 A G SLC26A3 Missense_Mutation p.Y530H 0.31 tolerated(0.4) benign(0.25) TCGA-44-3919-01 7 116546335 116546335 G C CAPZA2 Missense_Mutation p.D149H 0.05 deleterious(0.01) possibly_damaging(0.824) TCGA-44-3919-01 7 134896244 134896244 G A WDR91 Missense_Mutation p.A4V 0.17 deleterious(0) benign(0.417) TCGA-44-3919-01 7 136938242 136938242 C A PTN Missense_Mutation p.K86N 0.24 tolerated(0.06) probably_damaging(0.966) TCGA-44-3919-01 7 142099641 142099641 T C TRBV7-8 Missense_Mutation p.Y54C 0.16 deleterious(0) probably_damaging(1) TCGA-44-3919-01 7 158552780 158552780 G T ESYT2 Missense_Mutation p.T479K 0.16 deleterious(0) benign(0.325) TCGA-44-3919-01 7 99631162 99631162 G C ZKSCAN1 Missense_Mutation p.R345T 0.05 deleterious(0) possibly_damaging(0.887) TCGA-44-3919-01 7 99631261 99631261 G A ZKSCAN1 Missense_Mutation p.R378K 0.05 tolerated(0.58) benign(0) TCGA-44-3919-01 8 121313043 121313043 C G COL14A1 Missense_Mutation p.P1463A 0.03 deleterious(0) probably_damaging(0.999) TCGA-44-3919-01 8 145160793 145160793 G C MAF1 Missense_Mutation p.K35N 0.03 deleterious(0) probably_damaging(1) TCGA-44-3919-01 8 29963391 29963391 G C LEPROTL1 Intron 0.05 TCGA-44-3919-01 8 67923043 67923043 G A PPP1R42 Silent p.I153I 0.04 TCGA-44-3919-01 X 138698557 138698557 C A MCF2 Missense_Mutation p.A419S 0.15 deleterious(0) possibly_damaging(0.574) TCGA-44-3919-01 X 18926043 18926043 C T PHKA2 Missense_Mutation p.R831K 0.03 tolerated(1) benign(0.006) TCGA-44-3919-01 X 67430108 67430108 G A OPHN1 Missense_Mutation p.S240F 0.24 deleterious(0) possibly_damaging(0.548) TCGA-44-4112-01 10 103281449 103281449 C G BTRC Silent p.L126L 0.18 TCGA-44-4112-01 10 104638636 104638636 G C AS3MT Missense_Mutation p.R258P 0.31 deleterious(0) probably_damaging(0.987) TCGA-44-4112-01 10 114169302 114169302 G T ACSL5 Missense_Mutation p.K246N 0.36 deleterious(0) probably_damaging(0.949) TCGA-44-4112-01 10 11908754 11908754 G A PROSER2 Silent p.E121E 0.30 TCGA-44-4112-01 10 121140407 121140407 C A GRK5 Missense_Mutation p.L77M 0.37 deleterious(0.01) probably_damaging(0.968) TCGA-44-4112-01 10 124909248 124909248 A T HMX2 Missense_Mutation p.Q144L 0.29 tolerated(0.09) benign(0.079) TCGA-44-4112-01 10 125521438 125521438 T A CPXM2 Missense_Mutation p.Q576L 0.27 tolerated(0.61) benign(0.338) TCGA-44-4112-01 10 128830475 128830475 G C DOCK1 Missense_Mutation p.K580N 0.33 tolerated(0.12) benign(0.009) TCGA-44-4112-01 10 23409753 23409753 A C MSRB2 Missense_Mutation p.N171H 0.30 deleterious(0) probably_damaging(1) TCGA-44-4112-01 10 30317504 30317504 G A KIAA1462 Nonsense_Mutation p.Q525* 0.42 TCGA-44-4112-01 10 32573907 32573907 G A EPC1 Missense_Mutation p.S488L 0.34 tolerated(0.13) benign(0.007) TCGA-44-4112-01 10 51768660 51768660 G T AGAP6 Missense_Mutation p.G259W 0.30 deleterious(0.03) probably_damaging(0.981) TCGA-44-4112-01 10 61833765 61833765 C A ANK3 Missense_Mutation p.G2292C 0.33 probably_damaging(0.999) TCGA-44-4112-01 10 68857483 68857483 G T LRRTM3 Nonsense_Mutation p.E559* 0.35 TCGA-44-4112-01 10 82036276 82036276 C A MAT1A Missense_Mutation p.Q208H 0.32 deleterious(0.02) benign(0.404) TCGA-44-4112-01 10 88769369 88769369 C G RP11-96C23.10 3'Flank 0.25 TCGA-44-4112-01 11 1024922 1024922 G C MUC6 Silent p.L1049L 0.12 TCGA-44-4112-01 11 102713485 102713485 G A MMP3 Missense_Mutation p.P90S 0.70 deleterious(0.03) benign(0.225) TCGA-44-4112-01 11 111896296 111896296 G A DLAT Missense_Mutation p.V34M 0.35 tolerated_low_confidence(0.31) benign(0.071) TCGA-44-4112-01 11 113699991 113699991 A T USP28 Nonsense_Mutation p.C329* 0.47 TCGA-44-4112-01 11 117058369 117058369 T A SIDT2 Silent p.G371G 0.51 TCGA-44-4112-01 11 123624331 123624331 A G OR6X1 Missense_Mutation p.L299S 0.54 deleterious(0) probably_damaging(0.98) TCGA-44-4112-01 11 124294273 124294273 C A OR8B4 Silent p.L165L 0.61 TCGA-44-4112-01 11 128842434 128842434 G A ARHGAP32 Missense_Mutation p.P1309S 0.56 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-44-4112-01 11 15260554 15260554 G T INSC Missense_Mutation p.A490S 0.31 tolerated(0.33) benign(0.199) TCGA-44-4112-01 11 17794268 17794268 C G KCNC1 Intron 0.36 TCGA-44-4112-01 11 18301447 18301447 G C HPS5 Silent p.L1124L 0.24 TCGA-44-4112-01 11 1904695 1904695 C A LSP1 Missense_Mutation p.L263M 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.878) TCGA-44-4112-01 11 21592424 21592424 G T NELL1 Missense_Mutation p.G699C 0.36 deleterious(0.03) probably_damaging(0.997) TCGA-44-4112-01 11 2337896 2337896 C A TSPAN32 Silent p.R240R 0.37 TCGA-44-4112-01 11 26692759 26692759 C T SLC5A12 Missense_Mutation p.E583K 0.08 deleterious(0.05) benign(0.193) TCGA-44-4112-01 11 30033978 30033978 C T KCNA4 Missense_Mutation p.R83Q 0.28 tolerated_low_confidence(0.27) benign(0) TCGA-44-4112-01 11 30034116 30034116 C A KCNA4 Missense_Mutation p.R37M 0.34 deleterious_low_confidence(0) unknown(0) TCGA-44-4112-01 11 30433103 30433103 G A MPPED2 Missense_Mutation p.T266M 0.36 deleterious(0.03) possibly_damaging(0.474) TCGA-44-4112-01 11 30435814 30435814 C A MPPED2 Missense_Mutation p.V243F 0.34 deleterious(0) probably_damaging(0.996) TCGA-44-4112-01 11 4389468 4389468 G A OR52B4 Missense_Mutation p.P20S 0.33 deleterious(0) probably_damaging(1) TCGA-44-4112-01 11 4842710 4842710 C A OR51F2 Missense_Mutation p.P32Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-44-4112-01 11 5011855 5011855 G A MMP26 Silent p.K116K 0.22 TCGA-44-4112-01 11 51515976 51515976 A T OR4C46 Missense_Mutation p.H232L 0.47 deleterious_low_confidence(0.05) benign(0.005) TCGA-44-4112-01 11 55339717 55339717 G - OR4C16 Frame_Shift_Del p.G39Vfs*4 0.24 TCGA-44-4112-01 11 55761670 55761670 C A OR5F1 Missense_Mutation p.M144I 0.28 deleterious(0.01) possibly_damaging(0.877) TCGA-44-4112-01 11 56085805 56085805 C T OR8K3 Missense_Mutation p.T8M 0.13 tolerated_low_confidence(0.17) benign(0.009) TCGA-44-4112-01 11 56128508 56128508 C A OR8J1 Silent p.P262P 0.25 TCGA-44-4112-01 11 56185244 56185244 A - OR5R1 Frame_Shift_Del p.A156Pfs*11 0.22 TCGA-44-4112-01 11 56258462 56258462 G T OR5M8 Missense_Mutation p.L129M 0.33 deleterious(0) probably_damaging(1) TCGA-44-4112-01 11 56344907 56344907 G T OR5M10 Nonsense_Mutation p.C97* 0.21 TCGA-44-4112-01 11 57947485 57947485 G T OR9Q1 Missense_Mutation p.G190V 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-44-4112-01 11 58034677 58034677 C G OR10W1 Missense_Mutation p.K218N 0.43 deleterious(0.05) benign(0.076) TCGA-44-4112-01 11 58949495 58949495 A T DTX4 Silent p.T165T 0.46 TCGA-44-4112-01 11 61522909 61522909 C A MYRF Intron 0.27 TCGA-44-4112-01 11 62432976 62432976 C T C11orf48 Intron 0.25 TCGA-44-4112-01 11 67559743 67559743 A G FAM86C2P RNA 0.13 TCGA-44-4112-01 11 6816036 6816036 C A OR6A2 Missense_Mutation p.V302F 0.31 tolerated(0.17) benign(0.104) TCGA-44-4112-01 11 71821340 71821340 G A LRTOMT 3'UTR 0.35 TCGA-44-4112-01 11 72946375 72946375 G C P2RY2 3'UTR 0.41 TCGA-44-4112-01 11 76371973 76371973 C A LRRC32 Missense_Mutation p.V222L 0.28 tolerated(0.09) benign(0.126) TCGA-44-4112-01 11 7716867 7716867 C A OVCH2 Missense_Mutation p.D406Y 0.27 deleterious(0) probably_damaging(1) TCGA-44-4112-01 11 82879556 82879556 G C PCF11 Missense_Mutation p.D727H 0.42 tolerated(0.06) benign(0.03) TCGA-44-4112-01 12 101706003 101706003 G C UTP20 Missense_Mutation p.R834T 0.13 tolerated(0.11) probably_damaging(0.954) TCGA-44-4112-01 12 109936051 109936051 T C UBE3B Missense_Mutation p.L278S 0.37 deleterious(0) benign(0.145) TCGA-44-4112-01 12 113711406 113711406 G - TPCN1 Frame_Shift_Del p.N365Tfs*20 0.28 TCGA-44-4112-01 12 122990163 122990163 G A RSRC2 Nonsense_Mutation p.Q406* 0.34 TCGA-44-4112-01 12 122990164 122990164 A G RSRC2 Silent p.A405A 0.34 TCGA-44-4112-01 12 123041966 123041966 G T KNTC1 Missense_Mutation p.E436D 0.33 tolerated(0.06) probably_damaging(0.956) TCGA-44-4112-01 12 132335487 132335487 C T MMP17 Missense_Mutation p.R494C 0.20 deleterious(0) probably_damaging(0.977) TCGA-44-4112-01 12 18491482 18491482 G T PIK3C2G Missense_Mutation p.E465D 0.32 tolerated(0.22) benign(0.009) TCGA-44-4112-01 12 22208545 22208545 G T CMAS Splice_Site p.X187_splice 0.33 TCGA-44-4112-01 12 29597135 29597135 A T OVCH1 Missense_Mutation p.L987Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-44-4112-01 12 30882156 30882156 C T CAPRIN2 Missense_Mutation p.R403H 0.30 deleterious(0.03) benign(0.424) TCGA-44-4112-01 12 34175368 34175368 G A ALG10 5'UTR 0.33 TCGA-44-4112-01 12 39761735 39761735 C A KIF21A Nonsense_Mutation p.G184* 0.33 TCGA-44-4112-01 12 40761586 40761586 C T LRRK2 3'UTR 0.53 TCGA-44-4112-01 12 48238559 48238559 C A VDR Silent p.V468V 0.17 TCGA-44-4112-01 12 49373354 49373354 C A WNT1 Missense_Mutation p.R70S 0.38 deleterious(0.03) benign(0.23) TCGA-44-4112-01 12 5021590 5021590 C A KCNA1 Missense_Mutation p.A349E 0.32 tolerated(0.05) probably_damaging(0.919) TCGA-44-4112-01 12 52827967 52827967 G T KRT75 Missense_Mutation p.A41E 0.33 tolerated(0.29) benign(0.05) TCGA-44-4112-01 12 53012180 53012180 G A KRT73 Silent p.F43F 0.07 TCGA-44-4112-01 12 53189613 53189613 C A KRT3 Missense_Mutation p.A72S 0.26 tolerated(0.53) unknown(0) TCGA-44-4112-01 12 55641435 55641435 G T OR6C74 Missense_Mutation p.V122L 0.36 deleterious_low_confidence(0) benign(0.106) TCGA-44-4112-01 12 5685022 5685022 C G ANO2 Missense_Mutation p.D867H 0.16 tolerated(0.08) benign(0.006) TCGA-44-4112-01 12 56992447 56992447 C G BAZ2A Missense_Mutation p.E1891D 0.08 tolerated(0.07) benign(0.233) TCGA-44-4112-01 12 56994004 56994004 C T BAZ2A Missense_Mutation p.E1627K 0.16 tolerated(0.78) benign(0.031) TCGA-44-4112-01 12 56994073 56994073 C T BAZ2A Missense_Mutation p.E1604K 0.16 deleterious(0.01) probably_damaging(0.972) TCGA-44-4112-01 12 62929426 62929426 C T MON2 Silent p.L613L 0.33 TCGA-44-4112-01 12 66620547 66620547 A T IRAK3 Missense_Mutation p.E233V 0.34 deleterious(0) possibly_damaging(0.902) TCGA-44-4112-01 12 6671110 6671110 C A NOP2 Missense_Mutation p.D369Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-44-4112-01 12 6709107 6709107 C A CHD4 Silent p.G438G 0.35 TCGA-44-4112-01 12 6928612 6928612 T C CD4 3'UTR 0.23 TCGA-44-4112-01 12 7647772 7647772 C A CD163 Missense_Mutation p.C442F 0.29 deleterious(0) possibly_damaging(0.767) TCGA-44-4112-01 12 76740022 76740022 C G BBS10 Silent p.P581P 0.30 TCGA-44-4112-01 12 79679716 79679716 G T SYT1 Missense_Mutation p.D106Y 0.24 deleterious(0.01) possibly_damaging(0.702) TCGA-44-4112-01 12 88589425 88589425 A T TMTC3 Nonstop_Mutation p.*915Lext*2 0.26 TCGA-44-4112-01 12 9333633 9333633 A T PZP Silent p.A595A 0.50 TCGA-44-4112-01 12 94613897 94613897 C A PLXNC1 Silent p.R554R 0.29 TCGA-44-4112-01 13 100809550 100809550 G T PCCA Missense_Mutation p.G142C 0.21 deleterious(0) probably_damaging(1) TCGA-44-4112-01 13 101997748 101997748 G T NALCN Missense_Mutation p.A223D 0.34 deleterious(0) probably_damaging(0.936) TCGA-44-4112-01 13 102367988 102367988 G C ITGBL1 Missense_Mutation p.G490A 0.33 deleterious_low_confidence(0) benign(0.035) TCGA-44-4112-01 13 111130348 111130348 A G COL4A2 Splice_Site p.X809_splice 0.34 TCGA-44-4112-01 13 114762162 114762162 G C RASA3 Missense_Mutation p.C662W 0.32 deleterious(0) probably_damaging(1) TCGA-44-4112-01 13 29068987 29068987 C A FLT1 5'UTR 0.47 TCGA-44-4112-01 13 39262121 39262121 G C FREM2 Missense_Mutation p.E214Q 0.13 tolerated(0.47) benign(0.093) TCGA-44-4112-01 13 39446983 39446983 G A FREM2 Silent p.L2696L 0.07 TCGA-44-4112-01 13 48835306 48835306 C T ITM2B Silent p.F249F 0.15 TCGA-44-4112-01 14 104552111 104552111 G T ASPG Missense_Mutation p.A2S 0.30 deleterious_low_confidence(0.03) benign(0.065) TCGA-44-4112-01 14 19553769 19553769 G T POTEG Missense_Mutation p.G118V 0.12 deleterious(0) possibly_damaging(0.883) TCGA-44-4112-01 14 20692109 20692109 C A OR11H6 Missense_Mutation p.L81M 0.37 deleterious(0) probably_damaging(0.952) TCGA-44-4112-01 14 23468201 23468201 G A C14orf93 Missense_Mutation p.P11L 0.24 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-44-4112-01 14 23468206 23468206 G A C14orf93 Silent p.F9F 0.25 TCGA-44-4112-01 14 24607281 24607281 G A PSME1 Silent p.Q138Q 0.10 TCGA-44-4112-01 14 42356354 42356354 C A LRFN5 Missense_Mutation p.L176I 0.36 deleterious(0.02) possibly_damaging(0.874) TCGA-44-4112-01 14 44974151 44974151 A T FSCB Silent p.A680A 0.25 TCGA-44-4112-01 14 44976031 44976031 C A FSCB Nonsense_Mutation p.E54* 0.32 TCGA-44-4112-01 14 45711253 45711253 C A MIS18BP1 Missense_Mutation p.G376V 0.33 tolerated(0.25) benign(0.006) TCGA-44-4112-01 14 50801307 50801307 A G CDKL1 Silent p.S258S 0.34 TCGA-44-4112-01 14 60072161 60072161 C A RTN1 Silent p.L679L 0.26 TCGA-44-4112-01 14 64006248 64006248 T - PPP2R5E Frame_Shift_Del p.D53Tfs*12 0.25 TCGA-44-4112-01 14 67579829 67579829 G T GPHN Missense_Mutation p.V523F 0.24 tolerated(0.11) benign(0.432) TCGA-44-4112-01 14 72165754 72165754 C T SIPA1L1 Missense_Mutation p.S1144F 0.32 tolerated(0.2) possibly_damaging(0.726) TCGA-44-4112-01 14 76488667 76488667 T G IFT43 Intron 0.29 TCGA-44-4112-01 14 79181428 79181429 - A NRXN3 Frame_Shift_Ins p.R291Qfs*26 0.21 TCGA-44-4112-01 14 94931009 94931009 T A SERPINA9 Intron 0.40 TCGA-44-4112-01 14 94931156 94931156 G A SERPINA9 Missense_Mutation p.S331F 0.30 deleterious(0) probably_damaging(0.999) TCGA-44-4112-01 14 95080844 95080844 C T SERPINA3 Silent p.L22L 0.10 TCGA-44-4112-01 15 100345135 100345135 C G CTD-2054N24.2 5'Flank 0.34 TCGA-44-4112-01 15 23261760 23261760 C G GOLGA8I Intron 0.14 TCGA-44-4112-01 15 24921921 24921921 C A NPAP1 Missense_Mutation p.P303T 0.28 tolerated(0.21) possibly_damaging(0.86) TCGA-44-4112-01 15 25330609 25330609 G T SNORD116-18 RNA 0.35 TCGA-44-4112-01 15 27185175 27185175 G T GABRA5 Missense_Mutation p.Q276H 0.30 deleterious(0.04) probably_damaging(0.963) TCGA-44-4112-01 15 28230275 28230275 C A OCA2 Silent p.A433A 0.35 TCGA-44-4112-01 15 34640257 34640257 C A NUTM1 Missense_Mutation p.S35Y 0.37 deleterious(0) possibly_damaging(0.744) TCGA-44-4112-01 15 43940260 43940260 G - CATSPER2 Intron 0.33 TCGA-44-4112-01 15 45654417 45654417 T C GATM Missense_Mutation p.I388V 0.36 deleterious(0.03) benign(0.253) TCGA-44-4112-01 15 57212142 57212142 A T TCF12 Missense_Mutation p.I11L 0.28 tolerated(0.29) benign(0.012) TCGA-44-4112-01 15 58465266 58465266 G T AQP9 Splice_Site p.X80_splice 0.28 TCGA-44-4112-01 15 64067496 64067496 T A HERC1 Silent p.V109V 0.35 TCGA-44-4112-01 15 71305143 71305143 G C LRRC49 Missense_Mutation p.V537L 0.42 tolerated(0.05) probably_damaging(0.944) TCGA-44-4112-01 15 74707191 74707191 C T SEMA7A Silent p.P361P 0.08 TCGA-44-4112-01 15 81436103 81436103 G T C15orf26 Missense_Mutation p.W193L 0.36 deleterious(0) probably_damaging(0.999) TCGA-44-4112-01 15 88472600 88472600 C A NTRK3 Missense_Mutation p.G652V 0.36 tolerated(0.1) possibly_damaging(0.771) TCGA-44-4112-01 16 1262039 1262039 G T CACNA1H Missense_Mutation p.V1554L 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-44-4112-01 16 12758931 12758931 C A CPPED1 Missense_Mutation p.G253W 0.60 deleterious(0) probably_damaging(0.927) TCGA-44-4112-01 16 1396022 1396022 G T BAIAP3 Silent p.L783L 0.13 TCGA-44-4112-01 16 15026488 15026488 A T NPIPA1 5'Flank 0.13 TCGA-44-4112-01 16 17228386 17228386 G A XYLT1 Silent p.R657R 0.17 TCGA-44-4112-01 16 19451280 19451280 A T TMC5 Splice_Site 0.38 TCGA-44-4112-01 16 2002992 2002992 G T RPL3L Missense_Mutation p.P83H 0.29 deleterious(0) probably_damaging(0.999) TCGA-44-4112-01 16 20748250 20748250 T A THUMPD1 Silent p.A338A 0.32 TCGA-44-4112-01 16 2114374 2114374 G - TSC2 Frame_Shift_Del p.A516Qfs*19 0.33 TCGA-44-4112-01 16 21854852 21854852 C T NPIPB4 Missense_Mutation p.G134R 0.09 probably_damaging(0.979) TCGA-44-4112-01 16 22268069 22268069 G T EEF2K Missense_Mutation p.V207L 0.22 deleterious(0) probably_damaging(0.966) TCGA-44-4112-01 16 2288404 2288404 C G DNASE1L2 Silent p.L295L 0.07 TCGA-44-4112-01 16 23093759 23093759 C A USP31 Missense_Mutation p.Q650H 0.34 deleterious(0) probably_damaging(1) TCGA-44-4112-01 16 23160154 23160154 G A USP31 Silent p.L146L 0.14 TCGA-44-4112-01 16 27374034 27374034 A T IL4R Missense_Mutation p.K454M 0.46 deleterious(0.04) possibly_damaging(0.641) TCGA-44-4112-01 16 2818263 2818263 G T SRRM2 Splice_Site p.X2578_splice 0.50 TCGA-44-4112-01 16 33020658 33020658 G C IGHV3OR16-8 Missense_Mutation p.Q22H 0.45 deleterious_low_confidence(0.02) benign(0.179) TCGA-44-4112-01 16 4390918 4390918 C G PAM16 Intron 0.24 TCGA-44-4112-01 16 49672282 49672282 C - ZNF423 Frame_Shift_Del p.D261Tfs*107 0.30 TCGA-44-4112-01 16 56667828 56667828 G A MT1M 3'UTR 0.43 TCGA-44-4112-01 16 68265245 68265245 G A ESRP2 Missense_Mutation p.T516I 0.31 tolerated(0.1) benign(0.156) TCGA-44-4112-01 16 71318653 71318653 C A CMTR2 Nonsense_Mutation p.E391* 0.40 TCGA-44-4112-01 16 71482343 71482343 C A ZNF23 Nonsense_Mutation p.E529* 0.58 TCGA-44-4112-01 16 71571552 71571552 C A CHST4 Silent p.A324A 0.46 TCGA-44-4112-01 16 74452175 74452175 G T CLEC18B Missense_Mutation p.Q80K 0.18 tolerated(0.62) benign(0.016) TCGA-44-4112-01 16 823171 823171 C T MSLNL Silent p.L699L 0.06 TCGA-44-4112-01 16 84103628 84103628 C G MBTPS1 Missense_Mutation p.E600Q 0.52 tolerated(0.39) benign(0.317) TCGA-44-4112-01 16 86600890 86600890 C A FOXC2 5'UTR 0.50 TCGA-44-4112-01 17 10303967 10303967 C - MYH8 Frame_Shift_Del p.A1159Qfs*8 0.23 TCGA-44-4112-01 17 10397739 10397739 T A MYH1 Missense_Mutation p.R1867W 0.33 deleterious(0) probably_damaging(1) TCGA-44-4112-01 17 1640949 1640949 A T WDR81 Silent p.S1932S 0.56 TCGA-44-4112-01 17 18023924 18023924 G A MYO15A Missense_Mutation p.E604K 0.17 benign(0.292) TCGA-44-4112-01 17 25756978 25756978 G A TBC1D3P5 RNA 0.25 TCGA-44-4112-01 17 27448150 27448150 G - MYO18A Frame_Shift_Del p.A484Gfs*3 0.25 TCGA-44-4112-01 17 27910597 27910597 C A GIT1 Silent p.V30V 0.41 TCGA-44-4112-01 17 33266313 33266313 T A CCT6B Missense_Mutation p.N368Y 0.41 deleterious(0) benign(0.435) TCGA-44-4112-01 17 33687261 33687261 C A SLFN11 Splice_Site p.X400_splice 0.28 TCGA-44-4112-01 17 3563835 3563835 G A CTNS Intron 0.05 TCGA-44-4112-01 17 39872098 39872098 C T GAST Missense_Mutation p.R94C 0.05 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-44-4112-01 17 41244118 41244118 G A BRCA1 Nonsense_Mutation p.Q1144* 0.11 TCGA-44-4112-01 17 42168703 42168703 T A HDAC5 Missense_Mutation p.H442L 0.30 tolerated(0.21) benign(0.109) TCGA-44-4112-01 17 43320574 43320574 C A FMNL1 Silent p.A700A 0.32 TCGA-44-4112-01 17 46247980 46247980 G A SKAP1 Nonsense_Mutation p.R290* 0.30 TCGA-44-4112-01 17 49708884 49708884 G T CA10 3'UTR 0.39 TCGA-44-4112-01 17 49710885 49710885 G T CA10 Missense_Mutation p.Q306K 0.34 tolerated(0.43) benign(0.15) TCGA-44-4112-01 17 49731069 49731069 A T CA10 Missense_Mutation p.L165Q 0.24 deleterious(0) probably_damaging(0.987) TCGA-44-4112-01 17 55193622 55193622 G C AKAP1 Missense_Mutation p.R811T 0.33 deleterious(0) probably_damaging(0.998) TCGA-44-4112-01 17 56294052 56294052 C A MKS1 Missense_Mutation p.G79V 0.17 deleterious(0.03) benign(0.128) TCGA-44-4112-01 17 61489475 61489475 G C TANC2 Missense_Mutation p.K1220N 0.12 deleterious(0) probably_damaging(0.969) TCGA-44-4112-01 17 67186584 67186584 C A ABCA10 Missense_Mutation p.Q682H 0.43 tolerated(0.06) benign(0.078) TCGA-44-4112-01 17 7193314 7193314 G - YBX2 Frame_Shift_Del p.P274Rfs*126 0.22 TCGA-44-4112-01 17 73780812 73780812 G A UNK 5'Flank 0.33 TCGA-44-4112-01 17 73780814 73780814 C A UNK 5'Flank 0.33 TCGA-44-4112-01 17 74395027 74395027 C T UBE2O Missense_Mutation p.M558I 0.35 tolerated(0.3) benign(0.023) TCGA-44-4112-01 18 14753002 14753002 G C ANKRD30B Silent p.V167V 0.28 TCGA-44-4112-01 18 21083543 21083543 G A C18orf8 5'UTR 0.29 TCGA-44-4112-01 18 2698038 2698038 A T SMCHD1 Silent p.S447S 0.12 TCGA-44-4112-01 18 29867330 29867330 C A GAREM Silent p.G410G 0.28 TCGA-44-4112-01 18 30093072 30093072 G T WBP11P1 RNA 0.31 TCGA-44-4112-01 18 32887750 32887750 G C ZNF271 RNA 0.26 TCGA-44-4112-01 18 43217060 43217060 C T SLC14A2 Silent p.G252G 0.31 TCGA-44-4112-01 18 50923679 50923679 C A DCC Nonsense_Mutation p.S897* 0.36 TCGA-44-4112-01 18 61570672 61570672 C A SERPINB2 3'UTR 0.44 TCGA-44-4112-01 18 63547735 63547735 G T CDH7 Missense_Mutation p.D655Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-44-4112-01 18 7015801 7015801 A T LAMA1 Missense_Mutation p.C1016S 0.33 deleterious(0) probably_damaging(1) TCGA-44-4112-01 18 74154334 74154334 G A ZNF516 Missense_Mutation p.A226V 0.50 tolerated(0.23) benign(0.191) TCGA-44-4112-01 18 74963084 74963084 C A GALR1 Missense_Mutation p.P194T 0.28 tolerated(0.5) benign(0.009) TCGA-44-4112-01 18 74963085 74963085 C A GALR1 Missense_Mutation p.P194H 0.28 tolerated(0.23) benign(0.005) TCGA-44-4112-01 18 9513021 9513021 C G RALBP1 5'UTR 0.26 TCGA-44-4112-01 19 1254919 1254919 A T MIDN Missense_Mutation p.T239S 0.32 tolerated(0.51) benign(0.292) TCGA-44-4112-01 19 16025585 16025585 G T CYP4F11 Silent p.R412R 0.32 TCGA-44-4112-01 19 18968170 18968170 G C UPF1 Silent p.V670V 0.25 TCGA-44-4112-01 19 19638158 19638158 G T NDUFA13 Missense_Mutation p.R81L 0.29 deleterious(0.02) probably_damaging(0.98) TCGA-44-4112-01 19 19638159 19638159 G T NDUFA13 Silent p.R81R 0.28 TCGA-44-4112-01 19 33588796 33588796 A G GPATCH1 Missense_Mutation p.K330E 0.38 tolerated(0.05) benign(0.027) TCGA-44-4112-01 19 36430769 36430769 G T LRFN3 Missense_Mutation p.A148S 0.27 tolerated(0.77) benign(0.065) TCGA-44-4112-01 19 38939385 38939385 T G RYR1 Missense_Mutation p.S352A 0.40 possibly_damaging(0.531) TCGA-44-4112-01 19 39214595 39214595 G C ACTN4 Missense_Mutation p.E524Q 0.13 tolerated(0.27) probably_damaging(0.941) TCGA-44-4112-01 19 40541382 40541382 G C ZNF780B Missense_Mutation p.Q462E 0.19 tolerated(0.81) benign(0.001) TCGA-44-4112-01 19 4292588 4292588 G T TMIGD2 3'UTR 0.14 TCGA-44-4112-01 19 45452413 45452413 C T APOC2 Intron 0.11 TCGA-44-4112-01 19 46112818 46112818 C A EML2 3'Flank 0.37 TCGA-44-4112-01 19 46112819 46112819 C G EML2 3'Flank 0.37 TCGA-44-4112-01 19 46137701 46137701 C A EML2 Missense_Mutation p.A271S 0.43 tolerated(1) benign(0.004) TCGA-44-4112-01 19 46878954 46878954 G T PPP5C Missense_Mutation p.A153S 0.29 tolerated(0.58) benign(0.24) TCGA-44-4112-01 19 46914764 46914764 C G CCDC8 Missense_Mutation p.G435A 0.41 benign(0.072) TCGA-44-4112-01 19 47491246 47491246 G T ARHGAP35 Missense_Mutation p.G1276V 0.28 deleterious(0) probably_damaging(1) TCGA-44-4112-01 19 4793323 4793323 G A FEM1A Missense_Mutation p.G486E 0.07 tolerated(1) benign(0.027) TCGA-44-4112-01 19 48239721 48239721 C T EHD2 Silent p.V337V 0.12 TCGA-44-4112-01 19 48239724 48239724 C T EHD2 Silent p.I338I 0.13 TCGA-44-4112-01 19 48519237 48519237 G T ELSPBP1 Missense_Mutation p.W99L 0.18 deleterious(0) probably_damaging(0.999) TCGA-44-4112-01 19 48790040 48790040 C T ZNF114 Missense_Mutation p.P387S 0.39 deleterious(0.02) possibly_damaging(0.787) TCGA-44-4112-01 19 49142169 49142169 G T CA11 Silent p.R313R 0.44 TCGA-44-4112-01 19 49253722 49253722 C A FUT1 Missense_Mutation p.D273Y 0.27 deleterious(0) probably_damaging(0.997) TCGA-44-4112-01 19 51169662 51169662 G T SHANK1 Missense_Mutation p.P1852H 0.26 unknown(0) TCGA-44-4112-01 19 51462294 51462294 G A KLK6 3'UTR 0.27 TCGA-44-4112-01 19 51768891 51768891 C A SIGLECL1 Missense_Mutation p.L98I 0.26 tolerated(0.13) benign(0.391) TCGA-44-4112-01 19 51918110 51918110 C A SIGLEC10 Missense_Mutation p.G528V 0.40 deleterious(0) probably_damaging(1) TCGA-44-4112-01 19 52272906 52272906 C A FPR2 Missense_Mutation p.T332N 0.23 tolerated(0.07) benign(0.043) TCGA-44-4112-01 19 53311270 53311270 C A ZNF28 Silent p.L44L 0.34 TCGA-44-4112-01 19 53611537 53611537 C A ZNF415 3'UTR 0.33 TCGA-44-4112-01 19 54240116 54240116 C T MIR516B1 RNA 0.28 TCGA-44-4112-01 19 54304481 54304481 C A NLRP12 Missense_Mutation p.R919L 0.31 tolerated(0.32) probably_damaging(0.999) TCGA-44-4112-01 19 54445373 54445373 C T CACNG7 Silent p.R218R 0.43 TCGA-44-4112-01 19 55107393 55107393 G C LILRA1 Silent p.L317L 0.32 TCGA-44-4112-01 19 55693445 55693445 A T PTPRH Missense_Mutation p.L1046H 0.34 probably_damaging(0.957) TCGA-44-4112-01 19 56459349 56459349 G T NLRP8 Missense_Mutation p.W27C 0.31 deleterious_low_confidence(0.05) probably_damaging(0.953) TCGA-44-4112-01 19 57175089 57175089 T C ZNF835 Missense_Mutation p.Q493R 0.22 tolerated(0.08) benign(0.006) TCGA-44-4112-01 19 57175250 57175250 C T ZNF835 Silent p.T439T 0.26 TCGA-44-4112-01 19 57641790 57641790 C A USP29 Missense_Mutation p.L583M 0.32 tolerated(0.17) possibly_damaging(0.694) TCGA-44-4112-01 19 57705360 57705360 G A ZNF264 Missense_Mutation p.V51M 0.41 tolerated(0.06) benign(0.141) TCGA-44-4112-01 19 58579298 58579298 C A ZNF135 Silent p.T506T 0.33 TCGA-44-4112-01 19 814479 814479 G T LPPR3 Missense_Mutation p.D290E 0.21 tolerated(0.07) probably_damaging(0.989) TCGA-44-4112-01 19 9012894 9012894 A T MUC16 Silent p.A12850A 0.05 TCGA-44-4112-01 19 9065905 9065905 T A MUC16 Missense_Mutation p.T7181S 0.35 unknown(0) TCGA-44-4112-01 19 9071876 9071876 A G MUC16 Silent p.P5190P 0.37 TCGA-44-4112-01 1 101190255 101190255 G T VCAM1 Missense_Mutation p.C246F 0.32 deleterious(0) probably_damaging(1) TCGA-44-4112-01 1 10238755 10238755 A T UBE4B Silent p.A1193A 0.41 TCGA-44-4112-01 1 103488398 103488398 T C COL11A1 Missense_Mutation p.D382G 0.43 benign(0.201) TCGA-44-4112-01 1 118539080 118539080 G A SPAG17 Nonsense_Mutation p.R1656* 0.22 TCGA-44-4112-01 1 1221528 1221528 G A SCNN1D Missense_Mutation p.V261I 0.27 deleterious(0.04) possibly_damaging(0.647) TCGA-44-4112-01 1 13001122 13001122 A T PRAMEF6 Silent p.I187I 0.23 TCGA-44-4112-01 1 1403796 1403796 G C ATAD3C Silent p.L374L 0.35 TCGA-44-4112-01 1 1417993 1417993 C T ATAD3B Missense_Mutation p.T250M 0.10 deleterious(0) probably_damaging(0.987) TCGA-44-4112-01 1 150238867 150238867 C T APH1A Intron 0.07 TCGA-44-4112-01 1 150470105 150470105 G A TARS2 Missense_Mutation p.D374N 0.20 tolerated(1) benign(0.042) TCGA-44-4112-01 1 152082789 152082789 C G TCHH Missense_Mutation p.Q968H 0.03 unknown(0) TCGA-44-4112-01 1 152279773 152279773 G C FLG Nonsense_Mutation p.S2530* 0.04 TCGA-44-4112-01 1 152882470 152882470 C T IVL Missense_Mutation p.A66V 0.58 tolerated_low_confidence(0.24) unknown(0) TCGA-44-4112-01 1 152882785 152882785 G T IVL Missense_Mutation p.G171V 0.43 deleterious(0.01) unknown(0) TCGA-44-4112-01 1 153303330 153303330 C A PGLYRP4 Silent p.L345L 0.37 TCGA-44-4112-01 1 155851156 155851156 G A SYT11 Missense_Mutation p.D385N 0.07 deleterious(0) probably_damaging(0.921) TCGA-44-4112-01 1 157514076 157514076 G T FCRL5 Missense_Mutation p.P274T 0.77 tolerated(0.4) benign(0.012) TCGA-44-4112-01 1 160104960 160104960 G A ATP1A2 Missense_Mutation p.G664S 0.26 deleterious(0) probably_damaging(1) TCGA-44-4112-01 1 160604515 160604515 G T SLAMF1 Silent p.L196L 0.80 TCGA-44-4112-01 1 163317609 163317609 G C NUF2 Missense_Mutation p.K335N 0.17 tolerated(0.15) benign(0.161) TCGA-44-4112-01 1 165678714 165678714 C G RP11-466F5.10 5'Flank 0.28 TCGA-44-4112-01 1 169519136 169519136 T A F5 Missense_Mutation p.Y505F 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-44-4112-01 1 174969257 174969257 G T CACYBP 5'UTR 0.42 TCGA-44-4112-01 1 175365895 175365895 A T TNR Missense_Mutation p.I342N 0.19 deleterious(0.02) possibly_damaging(0.88) TCGA-44-4112-01 1 176659372 176659372 A T PAPPA2 Missense_Mutation p.K746I 0.16 deleterious(0) probably_damaging(1) TCGA-44-4112-01 1 176709330 176709330 G T PAPPA2 Missense_Mutation p.Q1383H 0.21 tolerated(0.21) benign(0.005) TCGA-44-4112-01 1 176734888 176734888 G T PAPPA2 Missense_Mutation p.G1413V 0.30 deleterious(0.04) possibly_damaging(0.634) TCGA-44-4112-01 1 176927566 176927566 C - ASTN1 Frame_Shift_Del p.V551* 0.17 TCGA-44-4112-01 1 179462083 179462083 G A AXDND1 Silent p.L795L 0.04 TCGA-44-4112-01 1 181686252 181686252 A T CACNA1E Missense_Mutation p.I447F 0.23 tolerated(0.15) benign(0.134) TCGA-44-4112-01 1 181708286 181708286 A T CACNA1E Missense_Mutation p.I1206L 0.25 deleterious(0.02) benign(0.01) TCGA-44-4112-01 1 193029091 193029091 C T UCHL5 5'Flank 0.10 TCGA-44-4112-01 1 197074309 197074309 A C ASPM Missense_Mutation p.W1358G 0.18 deleterious(0) probably_damaging(1) TCGA-44-4112-01 1 197390141 197390141 G A CRB1 Missense_Mutation p.E395K 0.18 deleterious(0.01) probably_damaging(0.989) TCGA-44-4112-01 1 202406948 202406948 G T PPP1R12B Splice_Site p.X419_splice 0.19 TCGA-44-4112-01 1 202699059 202699059 C G KDM5B Missense_Mutation p.E1425Q 0.59 tolerated(0.51) benign(0.037) TCGA-44-4112-01 1 203134620 203134620 C T ADORA1 Silent p.P191P 0.22 TCGA-44-4112-01 1 20416375 20416375 C A PLA2G5 Silent p.G93G 0.48 TCGA-44-4112-01 1 204970313 204970313 C A NFASC Missense_Mutation p.S1012Y 0.14 deleterious(0.05) unknown(0) TCGA-44-4112-01 1 205022256 205022256 C - CNTN2 5'UTR 0.27 TCGA-44-4112-01 1 21044096 21044096 G C KIF17 Missense_Mutation p.A35G 0.42 tolerated(1) benign(0) TCGA-44-4112-01 1 222919870 222919870 T C FAM177B Intron 0.74 TCGA-44-4112-01 1 223567913 223567913 G T C1orf65 Missense_Mutation p.A366S 0.71 tolerated(0.57) benign(0.035) TCGA-44-4112-01 1 226016497 226016497 A C EPHX1 Missense_Mutation p.K23Q 0.41 tolerated(0.18) benign(0.04) TCGA-44-4112-01 1 228509408 228509408 C T OBSCN Silent p.L5913L 0.09 TCGA-44-4112-01 1 236902645 236902645 G T ACTN2 Missense_Mutation p.R307L 0.55 deleterious(0) benign(0.413) TCGA-44-4112-01 1 238090337 238090337 C G RP11-193H5.1 RNA 0.81 TCGA-44-4112-01 1 23885429 23885429 G T ID3 3'UTR 0.16 TCGA-44-4112-01 1 240371236 240371236 C - FMN2 Frame_Shift_Del p.P1043Lfs*232 0.37 TCGA-44-4112-01 1 247607348 247607348 C A NLRP3 Missense_Mutation p.T915K 0.49 tolerated(0.72) benign(0.049) TCGA-44-4112-01 1 247614966 247614966 C A OR2B11 Missense_Mutation p.V107F 0.56 tolerated(0.21) benign(0.117) TCGA-44-4112-01 1 247737611 247737611 T C GCSAML Missense_Mutation p.L112P 0.27 deleterious(0) probably_damaging(0.998) TCGA-44-4112-01 1 25291042 25291042 G A RUNX3 Silent p.F7F 0.26 TCGA-44-4112-01 1 36060236 36060236 G A TFAP2E Missense_Mutation p.E430K 0.08 tolerated(0.15) benign(0.017) TCGA-44-4112-01 1 36060318 36060318 G A TFAP2E 3'UTR 0.13 TCGA-44-4112-01 1 40148339 40148339 G T HPCAL4 Missense_Mutation p.Q149K 0.36 tolerated(1) probably_damaging(0.991) TCGA-44-4112-01 1 41453091 41453091 G T CTPS1 Missense_Mutation p.A129S 0.32 tolerated(0.18) possibly_damaging(0.57) TCGA-44-4112-01 1 53073948 53073948 G A GPX7 Missense_Mutation p.E139K 0.36 tolerated(0.06) possibly_damaging(0.734) TCGA-44-4112-01 1 53676835 53676835 G T CPT2 Missense_Mutation p.G497C 0.21 deleterious(0) probably_damaging(1) TCGA-44-4112-01 1 62675610 62675610 T A L1TD1 Missense_Mutation p.D388E 0.38 tolerated(1) unknown(0) TCGA-44-4112-01 1 67155929 67155929 A T SGIP1 Missense_Mutation p.L500F 0.37 deleterious(0) probably_damaging(0.969) TCGA-44-4112-01 1 70225869 70225869 T A LRRC7 5'UTR 0.25 TCGA-44-4112-01 1 75055219 75055219 C A C1orf173 Intron 0.28 TCGA-44-4112-01 1 75596416 75596416 G - LHX8 Frame_Shift_Del 0.27 TCGA-44-4112-01 1 77987585 77987585 G T AK5 Missense_Mutation p.G462V 0.46 deleterious(0) probably_damaging(0.96) TCGA-44-4112-01 1 78047770 78047770 C A ZZZ3 Missense_Mutation p.L562F 0.25 deleterious(0) probably_damaging(0.976) TCGA-44-4112-01 1 87012868 87012868 C A CLCA4 Silent p.S22S 0.31 TCGA-44-4112-01 1 97278637 97278637 A T PTBP2 Missense_Mutation p.T481S 0.28 tolerated(0.2) benign(0.13) TCGA-44-4112-01 1 99771388 99771388 A G LPPR4 Missense_Mutation p.T372A 0.40 tolerated(0.78) benign(0.014) TCGA-44-4112-01 20 19674054 19674054 C A SLC24A3 Nonsense_Mutation p.Y492* 0.33 TCGA-44-4112-01 20 21687270 21687270 C T PAX1 Silent p.L161L 0.11 TCGA-44-4112-01 20 2597907 2597907 G A TMC2 Silent p.V710V 0.36 TCGA-44-4112-01 20 3052311 3052311 C A OXT Missense_Mutation p.P4T 0.55 tolerated(0.7) benign(0.248) TCGA-44-4112-01 20 3128052 3128052 T A FASTKD5 Silent p.S555S 0.38 TCGA-44-4112-01 20 3234371 3234371 C A C20orf194 Splice_Site p.X1141_splice 0.34 TCGA-44-4112-01 20 33067498 33067498 A T ITCH Silent p.A615A 0.25 TCGA-44-4112-01 20 3654111 3654111 G T ADAM33 Silent p.A341A 0.24 TCGA-44-4112-01 20 3869922 3869922 C T PANK2 Nonsense_Mutation p.R59* 0.34 TCGA-44-4112-01 20 40042045 40042045 C T CHD6 Silent p.E2350E 0.10 TCGA-44-4112-01 20 42695474 42695474 G T TOX2 Silent p.G487G 0.27 TCGA-44-4112-01 20 43034856 43034856 C A HNF4A Missense_Mutation p.H92N 0.25 deleterious(0.04) benign(0.428) TCGA-44-4112-01 20 44587938 44587938 G A ZNF335 Missense_Mutation p.R719C 0.25 deleterious(0) probably_damaging(0.999) TCGA-44-4112-01 20 44695821 44695821 C G NCOA5 Splice_Site p.X168_splice 0.14 TCGA-44-4112-01 20 56195375 56195375 G C ZBP1 5'UTR 0.38 TCGA-44-4112-01 20 57484830 57484830 G T GNAS Silent p.L913L 0.09 TCGA-44-4112-01 20 61576189 61576189 C T GID8 Silent p.N204N 0.28 TCGA-44-4112-01 20 8862495 8862495 G C PLCB1 Nonstop_Mutation p.*1217Sext*38 0.32 TCGA-44-4112-01 21 10970037 10970037 C A TPTE Missense_Mutation p.A31S 0.14 tolerated(0.21) benign(0.01) TCGA-44-4112-01 21 37664514 37664514 C G DOPEY2 Missense_Mutation p.L2210V 0.40 deleterious(0.01) possibly_damaging(0.677) TCGA-44-4112-01 22 16287591 16287591 C A POTEH Missense_Mutation p.G99C 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.853) TCGA-44-4112-01 22 22786508 22786508 C T IGLV1-36 Nonsense_Mutation p.Q20* 0.41 TCGA-44-4112-01 22 29886353 29886353 G A NEFH Silent p.K908K 0.64 TCGA-44-4112-01 22 30074300 30074301 - A NF2 Frame_Shift_Ins p.E522Rfs*20 0.17 TCGA-44-4112-01 2 101093867 101093867 T A NMS Silent p.V84V 0.56 TCGA-44-4112-01 2 101185395 101185396 AA - PDCL3 Frame_Shift_Del p.K46Nfs*3 0.08 TCGA-44-4112-01 2 102964544 102964544 T A IL1RL1 Silent p.T370T 0.26 TCGA-44-4112-01 2 129026217 129026218 CG A HS6ST1 Frame_Shift_Del p.R252Sfs*6 0.21 TCGA-44-4112-01 2 130878106 130878106 G A POTEF 5'UTR 0.37 TCGA-44-4112-01 2 136575626 136575626 G A LCT Missense_Mutation p.S331F 0.10 tolerated(0.44) benign(0.016) TCGA-44-4112-01 2 141665515 141665515 G T LRP1B Missense_Mutation p.L1151M 0.32 probably_damaging(0.91) TCGA-44-4112-01 2 158980311 158980311 T A UPP2 Missense_Mutation p.L296I 0.31 tolerated(0.07) benign(0.408) TCGA-44-4112-01 2 168099691 168099691 G T XIRP2 Missense_Mutation p.G597C 0.45 possibly_damaging(0.882) TCGA-44-4112-01 2 179398197 179398197 A G TTN Missense_Mutation p.F34382S 0.47 TCGA-44-4112-01 2 179629388 179629388 C A TTN Missense_Mutation p.C3285F 0.52 TCGA-44-4112-01 2 179642042 179642042 C A TTN Missense_Mutation p.V1550L 0.49 TCGA-44-4112-01 2 189875383 189875383 G T COL3A1 Missense_Mutation p.G1341C 0.47 unknown(0) TCGA-44-4112-01 2 191841713 191841713 C T STAT1 Missense_Mutation p.E638K 0.22 tolerated(0.1) benign(0.18) TCGA-44-4112-01 2 192257838 192257838 G T MYO1B Missense_Mutation p.D706Y 0.20 deleterious(0) probably_damaging(0.98) TCGA-44-4112-01 2 196718076 196718076 G T DNAH7 Silent p.T2924T 0.13 TCGA-44-4112-01 2 198436928 198436928 G A RFTN2 Missense_Mutation p.S437L 0.08 tolerated(0.21) benign(0.001) TCGA-44-4112-01 2 198950213 198950213 G C PLCL1 Missense_Mutation p.D658H 0.18 deleterious(0) probably_damaging(0.999) TCGA-44-4112-01 2 201533401 201533401 C A AOX1 Missense_Mutation p.Q1225K 0.43 tolerated(0.13) benign(0.008) TCGA-44-4112-01 2 202436667 202436667 A G ALS2CR11 Missense_Mutation p.V277A 0.58 tolerated(0.08) benign(0.199) TCGA-44-4112-01 2 202483879 202483879 C A ALS2CR11 5'UTR 0.12 TCGA-44-4112-01 2 207003266 207003266 C A NDUFS1 Silent p.L459L 0.20 TCGA-44-4112-01 2 212578346 212578346 C A ERBB4 Missense_Mutation p.C304F 0.49 deleterious(0) probably_damaging(1) TCGA-44-4112-01 2 219846816 219846816 T A FEV Missense_Mutation p.N97I 0.51 deleterious(0) probably_damaging(1) TCGA-44-4112-01 2 239040032 239040032 G T ESPNL Missense_Mutation p.G893C 0.63 deleterious(0.02) probably_damaging(0.984) TCGA-44-4112-01 2 27372190 27372190 A T TCF23 Silent p.R63R 0.36 TCGA-44-4112-01 2 27478154 27478154 C A SLC30A3 3'UTR 0.42 TCGA-44-4112-01 2 27666044 27666044 G T KRTCAP3 Missense_Mutation p.R126L 0.43 deleterious(0.02) benign(0.352) TCGA-44-4112-01 2 29551229 29551229 C A ALK Missense_Mutation p.E467D 0.35 deleterious(0.04) probably_damaging(0.99) TCGA-44-4112-01 2 3447625 3447625 T C TRAPPC12 Missense_Mutation p.L498P 0.41 deleterious(0) probably_damaging(0.999) TCGA-44-4112-01 2 37000953 37000953 C T VIT Silent p.T233T 0.28 TCGA-44-4112-01 2 47607038 47607038 G T EPCAM Missense_Mutation p.G263V 0.33 tolerated(0.2) possibly_damaging(0.764) TCGA-44-4112-01 2 54045035 54045035 G A ERLEC1 Missense_Mutation p.V461I 0.26 deleterious(0) possibly_damaging(0.718) TCGA-44-4112-01 2 69098254 69098254 C A BMP10 Silent p.V79V 0.33 TCGA-44-4112-01 2 71160216 71160216 C T VAX2 Missense_Mutation p.S252L 0.17 deleterious(0.01) benign(0.002) TCGA-44-4112-01 2 90078204 90078204 G T IGKV3D-20 Missense_Mutation p.D81Y 0.33 deleterious(0) possibly_damaging(0.703) TCGA-44-4112-01 3 100328780 100328780 T A GPR128 Missense_Mutation p.L27Q 0.34 deleterious(0) probably_damaging(0.972) TCGA-44-4112-01 3 119013646 119013646 C T ARHGAP31 5'UTR 0.35 TCGA-44-4112-01 3 120973837 120973837 G T STXBP5L Missense_Mutation p.D513Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-44-4112-01 3 121972965 121972965 C T CASR 5'UTR 0.30 TCGA-44-4112-01 3 122002901 122002901 C A CASR Missense_Mutation p.N710K 0.30 deleterious(0.02) probably_damaging(0.964) TCGA-44-4112-01 3 122631831 122631831 A G SEMA5B Missense_Mutation p.W916R 0.24 deleterious(0) probably_damaging(1) TCGA-44-4112-01 3 124592374 124592374 G C ITGB5 Silent p.L25L 0.09 TCGA-44-4112-01 3 131101022 131101022 G A NUDT16 Missense_Mutation p.E91K 0.29 tolerated(0.17) possibly_damaging(0.706) TCGA-44-4112-01 3 133614397 133614398 - G RAB6B 5'UTR 0.40 TCGA-44-4112-01 3 142757772 142757772 A G U2SURP Missense_Mutation p.H785R 0.31 tolerated(0.52) benign(0.152) TCGA-44-4112-01 3 158409367 158409367 G T GFM1 3'UTR 0.45 TCGA-44-4112-01 3 158787130 158787130 C A IQCJ 5'UTR 0.27 TCGA-44-4112-01 3 158991564 158991564 A T IQCJ-SCHIP1 Intron 0.30 TCGA-44-4112-01 3 164733862 164733862 G C SI Missense_Mutation p.Q1256E 0.12 deleterious(0.01) possibly_damaging(0.79) TCGA-44-4112-01 3 170216488 170216488 C A SLC7A14 Nonsense_Mutation p.E243* 0.36 TCGA-44-4112-01 3 17469948 17469948 G A TBC1D5 Missense_Mutation p.S54F 0.17 deleterious(0) possibly_damaging(0.757) TCGA-44-4112-01 3 183667663 183667663 C A ABCC5 Silent p.L1035L 0.36 TCGA-44-4112-01 3 184099382 184099382 G A CHRD Missense_Mutation p.E161K 0.11 deleterious(0.01) benign(0.159) TCGA-44-4112-01 3 185341817 185341817 A T SENP2 Nonsense_Mutation p.R520* 0.32 TCGA-44-4112-01 3 186335058 186335058 G C AHSG Silent p.A164A 0.32 TCGA-44-4112-01 3 194118069 194118069 G A GP5 Missense_Mutation p.R315C 0.39 tolerated(0.07) benign(0.003) TCGA-44-4112-01 3 38411658 38411658 C T XYLB Missense_Mutation p.S253L 0.09 deleterious(0.01) benign(0.158) TCGA-44-4112-01 3 41274850 41274850 G T CTNNB1 Missense_Mutation p.G367V 0.25 deleterious(0.01) possibly_damaging(0.456) TCGA-44-4112-01 3 42642550 42642550 G A NKTR Missense_Mutation p.E18K 0.21 tolerated_low_confidence(0.06) unknown(0) TCGA-44-4112-01 3 42703101 42703101 C T ZBTB47 Missense_Mutation p.A533V 0.34 deleterious(0) unknown(0) TCGA-44-4112-01 3 42982786 42982786 C A KRBOX1 Silent p.A35A 0.50 TCGA-44-4112-01 3 4358118 4358118 G T SETMAR Missense_Mutation p.D415Y 0.19 deleterious_low_confidence(0.03) unknown(0) TCGA-44-4112-01 3 47663809 47663809 C G SMARCC1 Missense_Mutation p.R890T 0.32 deleterious(0) probably_damaging(0.979) TCGA-44-4112-01 3 47704061 47704061 C T SMARCC1 Missense_Mutation p.D641N 0.13 deleterious(0) probably_damaging(0.992) TCGA-44-4112-01 3 49691797 49691797 C T BSN Missense_Mutation p.S1603F 0.33 unknown(0) TCGA-44-4112-01 3 54913116 54913116 G T CACNA2D3 Silent p.G594G 0.23 TCGA-44-4112-01 3 73433094 73433097 CCGG AAGGA PDZRN3 Frame_Shift_Ins p.P874Sfs*138 0.30 TCGA-44-4112-01 3 77623840 77623840 G T ROBO2 Missense_Mutation p.G737V 0.38 deleterious(0) probably_damaging(1) TCGA-44-4112-01 3 87017756 87017756 G C VGLL3 Missense_Mutation p.S307R 0.35 deleterious(0) benign(0.363) TCGA-44-4112-01 3 89391035 89391035 G T EPHA3 Silent p.G367G 0.28 TCGA-44-4112-01 3 95374339 95374339 C A MTHFD2P1 RNA 0.25 TCGA-44-4112-01 3 9791931 9791931 G T OGG1 5'UTR 0.28 TCGA-44-4112-01 3 99567728 99567728 G C FILIP1L Missense_Mutation p.T931R 0.33 deleterious(0) probably_damaging(1) TCGA-44-4112-01 4 113350384 113350384 C T ALPK1 Missense_Mutation p.T292M 0.31 deleterious(0) probably_damaging(0.97) TCGA-44-4112-01 4 114153332 114153332 T A ANK2 Missense_Mutation p.L134I 0.40 probably_damaging(0.999) TCGA-44-4112-01 4 114274319 114274319 C G ANK2 Missense_Mutation p.I1515M 0.22 possibly_damaging(0.452) TCGA-44-4112-01 4 123336740 123336740 G T ADAD1 Missense_Mutation p.V486L 0.27 deleterious(0) possibly_damaging(0.872) TCGA-44-4112-01 4 126337745 126337745 G C FAT4 Missense_Mutation p.R2329P 0.29 possibly_damaging(0.463) TCGA-44-4112-01 4 128804445 128804445 G T PLK4 Missense_Mutation p.G52V 0.37 deleterious(0) probably_damaging(0.998) TCGA-44-4112-01 4 13543923 13543923 G A NKX3-2 Silent p.S232S 0.27 TCGA-44-4112-01 4 156629414 156629414 A G GUCY1A3 Missense_Mutation p.E115G 0.20 tolerated(0.56) benign(0.309) TCGA-44-4112-01 4 159052134 159052134 C G FAM198B Missense_Mutation p.G394R 0.20 deleterious(0) probably_damaging(0.998) TCGA-44-4112-01 4 164049999 164049999 C A NAF1 3'UTR 0.19 TCGA-44-4112-01 4 164394019 164394019 G T TKTL2 Missense_Mutation p.P290T 0.35 deleterious(0.03) possibly_damaging(0.864) TCGA-44-4112-01 4 164449860 164449860 G C MARCH1 3'UTR 0.06 TCGA-44-4112-01 4 176573023 176573023 A T GPM6A Missense_Mutation p.V168E 0.31 tolerated(0.31) benign(0.211) TCGA-44-4112-01 4 183651436 183651436 C A TENM3 Missense_Mutation p.P890Q 0.21 deleterious(0.01) probably_damaging(0.937) TCGA-44-4112-01 4 183664485 183664485 G T TENM3 Missense_Mutation p.G1181V 0.27 deleterious(0) benign(0.011) TCGA-44-4112-01 4 187538952 187538952 C A FAT1 Missense_Mutation p.D2930Y 0.30 probably_damaging(0.994) TCGA-44-4112-01 4 22390178 22390178 C A GPR125 Missense_Mutation p.S1039I 0.45 deleterious(0) possibly_damaging(0.702) TCGA-44-4112-01 4 3444869 3444869 A G HGFAC Missense_Mutation p.K131E 0.23 tolerated(0.11) possibly_damaging(0.639) TCGA-44-4112-01 4 39904046 39904046 C T PDS5A Missense_Mutation p.V474I 0.14 tolerated(0.05) probably_damaging(0.999) TCGA-44-4112-01 4 55131116 55131116 C G PDGFRA Missense_Mutation p.A220G 0.52 deleterious(0) benign(0.256) TCGA-44-4112-01 4 55961743 55961743 C A KDR Splice_Site p.X939_splice 0.19 TCGA-44-4112-01 4 68534382 68534382 C T UBA6 Missense_Mutation p.G227D 0.19 deleterious(0) probably_damaging(0.98) TCGA-44-4112-01 4 69535962 69535962 G T UGT2B15 Missense_Mutation p.N125K 0.17 tolerated(0.89) benign(0.001) TCGA-44-4112-01 4 70592733 70592733 C A SULT1B1 3'UTR 0.28 TCGA-44-4112-01 4 71691024 71691024 C A GRSF1 Missense_Mutation p.R461L 0.45 deleterious(0.05) probably_damaging(0.965) TCGA-44-4112-01 4 72897911 72897911 G T NPFFR2 Missense_Mutation p.R98L 0.44 tolerated_low_confidence(0.13) benign(0) TCGA-44-4112-01 4 79402985 79402985 A G FRAS1 Missense_Mutation p.H2824R 0.51 benign(0.018) TCGA-44-4112-01 4 84516068 84516068 G T AGPAT9 Missense_Mutation p.W270L 0.25 tolerated(0.06) probably_damaging(0.999) TCGA-44-4112-01 5 108281839 108281839 G T FER Missense_Mutation p.K415N 0.61 tolerated(0.37) possibly_damaging(0.776) TCGA-44-4112-01 5 110441772 110441772 G C WDR36 Missense_Mutation p.K426N 0.10 deleterious(0.01) possibly_damaging(0.756) TCGA-44-4112-01 5 115339077 115339077 G T AQPEP Missense_Mutation p.K679N 0.12 tolerated(0.12) possibly_damaging(0.863) TCGA-44-4112-01 5 126859188 126859188 G C PRRC1 Missense_Mutation p.G6A 0.27 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-44-4112-01 5 127483407 127483407 C T SLC12A2 Missense_Mutation p.P623S 0.13 deleterious(0) probably_damaging(1) TCGA-44-4112-01 5 127710389 127710389 C A FBN2 Missense_Mutation p.S676I 0.09 deleterious(0) benign(0.392) TCGA-44-4112-01 5 133909338 133909338 A G JADE2 Missense_Mutation p.R480G 0.61 deleterious(0.01) benign(0.432) TCGA-44-4112-01 5 13820609 13820609 C A DNAH5 Splice_Site p.X2230_splice 0.20 TCGA-44-4112-01 5 139193210 139193210 C T PSD2 Missense_Mutation p.R230C 0.70 deleterious(0.02) possibly_damaging(0.863) TCGA-44-4112-01 5 140181953 140181953 C A PCDHA3 Missense_Mutation p.P391T 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.532) TCGA-44-4112-01 5 140242852 140242852 C A AC005609.1 Missense_Mutation p.A42S 0.11 tolerated_low_confidence(0.19) possibly_damaging(0.709) TCGA-44-4112-01 5 140558219 140558219 G T PCDHB8 Missense_Mutation p.D202Y 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-4112-01 5 140590357 140590357 C A PCDHB12 Silent p.T626T 0.39 TCGA-44-4112-01 5 140603156 140603156 G T PCDHB14 Missense_Mutation p.G27C 0.18 tolerated_low_confidence(0.12) benign(0.002) TCGA-44-4112-01 5 140731096 140731096 G A PCDHGB1 Silent p.K423K 0.64 TCGA-44-4112-01 5 140799011 140799011 G T PCDHGB7 Nonsense_Mutation p.E529* 0.67 TCGA-44-4112-01 5 140810274 140810274 C T PCDHGA12 5'UTR 0.63 TCGA-44-4112-01 5 140812210 140812210 G T PCDHGA12 Silent p.T628T 0.13 TCGA-44-4112-01 5 150276329 150276329 C T ZNF300 Missense_Mutation p.E174K 0.09 tolerated(1) benign(0.1) TCGA-44-4112-01 5 158135059 158135059 A G EBF1 Missense_Mutation p.F558L 0.60 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-44-4112-01 5 162909666 162909666 C T HMMR Silent p.A468A 0.24 TCGA-44-4112-01 5 168093656 168093656 G T SLIT3 Missense_Mutation p.R1459S 0.26 tolerated(0.2) benign(0.22) TCGA-44-4112-01 5 169494661 169494661 G T DOCK2 Missense_Mutation p.V1539F 0.14 deleterious(0) probably_damaging(1) TCGA-44-4112-01 5 169508848 169508848 C A DOCK2 Missense_Mutation p.L1764M 0.17 tolerated_low_confidence(0.17) benign(0.021) TCGA-44-4112-01 5 169533120 169533120 C G FOXI1 Silent p.G53G 0.27 TCGA-44-4112-01 5 170736451 170736451 G T TLX3 Missense_Mutation p.D28Y 0.37 deleterious(0) possibly_damaging(0.766) TCGA-44-4112-01 5 173491286 173491286 A T NSG2 Nonsense_Mutation p.K61* 0.48 TCGA-44-4112-01 5 173534364 173534364 G T NSG2 Missense_Mutation p.Q124H 0.29 deleterious(0.02) probably_damaging(0.984) TCGA-44-4112-01 5 176011426 176011426 T A CDHR2 Missense_Mutation p.V715E 0.12 tolerated(1) benign(0.013) TCGA-44-4112-01 5 176026665 176026665 G - GPRIN1 Frame_Shift_Del p.R58Gfs*78 0.09 TCGA-44-4112-01 5 176306803 176306803 C T UNC5A Silent p.G815G 0.08 TCGA-44-4112-01 5 178585744 178585744 A C ADAMTS2 Missense_Mutation p.F371C 0.07 deleterious(0) probably_damaging(0.998) TCGA-44-4112-01 5 21501894 21501894 G A GUSBP1 RNA 0.15 TCGA-44-4112-01 5 24487744 24487744 C G CDH10 3'UTR 0.24 TCGA-44-4112-01 5 31323317 31323317 G T CDH6 Missense_Mutation p.D759Y 0.24 deleterious(0.01) possibly_damaging(0.876) TCGA-44-4112-01 5 33937086 33937086 C A RXFP3 Silent p.R81R 0.20 TCGA-44-4112-01 5 33989433 33989433 T A AMACR Missense_Mutation p.H305L 0.41 tolerated(0.33) benign(0) TCGA-44-4112-01 5 35084585 35084585 G C PRLR Missense_Mutation p.D120E 0.23 tolerated(0.07) possibly_damaging(0.832) TCGA-44-4112-01 5 35988559 35988560 - A UGT3A1 Frame_Shift_Ins p.L63Ffs*6 0.21 TCGA-44-4112-01 5 36677103 36677103 G T SLC1A3 Missense_Mutation p.R226L 0.23 tolerated(0.15) benign(0.004) TCGA-44-4112-01 5 37341209 37341209 C A NUP155 Missense_Mutation p.R410I 0.21 tolerated(0.35) benign(0.01) TCGA-44-4112-01 5 39153679 39153679 G A FYB Missense_Mutation p.S398L 0.10 deleterious(0.04) possibly_damaging(0.791) TCGA-44-4112-01 5 39285236 39285236 C T C9 3'UTR 0.11 TCGA-44-4112-01 5 482774 482774 G A SLC9A3 Silent p.R415R 0.17 TCGA-44-4112-01 5 52211398 52211398 G T ITGA1 Silent p.G654G 0.41 TCGA-44-4112-01 5 5461293 5461293 G T KIAA0947 Missense_Mutation p.G616C 0.29 deleterious(0.01) probably_damaging(0.955) TCGA-44-4112-01 5 72383455 72383455 G A FCHO2 Missense_Mutation p.G762E 0.24 deleterious(0.03) probably_damaging(1) TCGA-44-4112-01 5 79373964 79373964 C G THBS4 Missense_Mutation p.L727V 0.09 tolerated(0.07) benign(0.073) TCGA-44-4112-01 5 80497210 80497210 G A RASGRF2 Missense_Mutation p.R952Q 0.03 tolerated(0.16) possibly_damaging(0.631) TCGA-44-4112-01 6 128134882 128134882 G C THEMIS Missense_Mutation p.Q302E 0.39 tolerated(0.09) benign(0.167) TCGA-44-4112-01 6 129649485 129649485 C G LAMA2 Silent p.T1413T 0.60 TCGA-44-4112-01 6 130762209 130762209 G T TMEM200A Silent p.S214S 0.65 TCGA-44-4112-01 6 131937143 131937143 C A MED23 Splice_Site p.X261_splice 0.50 TCGA-44-4112-01 6 132938808 132938808 G T TAAR2 Silent p.V179V 0.59 TCGA-44-4112-01 6 143081590 143081590 G A HIVEP2 Silent p.S1945S 0.35 TCGA-44-4112-01 6 146247376 146247376 T A SHPRH Silent p.I1086I 0.34 TCGA-44-4112-01 6 146720744 146720744 C A GRM1 Missense_Mutation p.R857S 0.34 deleterious(0) probably_damaging(1) TCGA-44-4112-01 6 147631360 147631360 C T STXBP5 Missense_Mutation p.T353I 0.33 deleterious(0) probably_damaging(0.969) TCGA-44-4112-01 6 147680270 147680270 A C STXBP5 Missense_Mutation p.I786L 0.50 tolerated(0.49) benign(0.068) TCGA-44-4112-01 6 155761176 155761176 G A NOX3 Silent p.F194F 0.09 TCGA-44-4112-01 6 160237602 160237602 C A PNLDC1 Missense_Mutation p.A352E 0.39 deleterious(0) probably_damaging(0.969) TCGA-44-4112-01 6 163149063 163149063 G A PACRG Intron 0.27 TCGA-44-4112-01 6 24146308 24146308 G T NRSN1 3'UTR 0.50 TCGA-44-4112-01 6 29012092 29012092 C A OR2W1 Silent p.P287P 0.29 TCGA-44-4112-01 6 32522654 32522654 G C RNU1-61P 5'Flank 0.50 TCGA-44-4112-01 6 35053711 35053711 G T ANKS1A Missense_Mutation p.A1101S 0.21 tolerated(0.07) benign(0.119) TCGA-44-4112-01 6 35212536 35212536 A G SCUBE3 Silent p.P783P 0.29 TCGA-44-4112-01 6 37430725 37430726 CC G CMTR1 Frame_Shift_Del p.L483Wfs*3 0.28 TCGA-44-4112-01 6 38690580 38690581 - G DNAH8 5'Flank 0.11 TCGA-44-4112-01 6 44150906 44150906 G A CAPN11 Missense_Mutation p.D690N 0.40 tolerated(0.19) benign(0.013) TCGA-44-4112-01 6 50016257 50016257 G T DEFB112 Silent p.I36I 0.33 TCGA-44-4112-01 6 51524489 51524489 G A PKHD1 Nonsense_Mutation p.Q3479* 0.08 TCGA-44-4112-01 6 7585490 7585490 G T DSP Silent p.T2665T 0.66 TCGA-44-4112-01 6 97052766 97052766 C T FHL5 Silent p.S100S 0.45 TCGA-44-4112-01 7 100677932 100677932 G A MUC17 Missense_Mutation p.A1079T 0.52 possibly_damaging(0.483) TCGA-44-4112-01 7 101183242 101183242 T G COL26A1 Silent p.T172T 0.64 TCGA-44-4112-01 7 101870904 101870904 G T CUX1 Missense_Mutation p.G1141C 0.29 tolerated(0.07) unknown(0) TCGA-44-4112-01 7 103137039 103137039 G T RELN Missense_Mutation p.L3043M 0.67 deleterious(0.02) possibly_damaging(0.873) TCGA-44-4112-01 7 127670602 127670602 A G LRRC4 Missense_Mutation p.L31P 0.67 deleterious_low_confidence(0.04) benign(0.201) TCGA-44-4112-01 7 128496629 128496629 C T FLNC Missense_Mutation p.R2437W 0.08 deleterious(0.04) probably_damaging(0.999) TCGA-44-4112-01 7 139285223 139285223 C A HIPK2 Missense_Mutation p.R792L 0.34 tolerated(0.38) benign(0.148) TCGA-44-4112-01 7 142008600 142008600 C A TRBV3-1 Missense_Mutation p.Q25K 0.58 deleterious(0) probably_damaging(1) TCGA-44-4112-01 7 142111590 142111590 G T TRBV5-7 Missense_Mutation p.T49N 0.67 tolerated(0.6) benign(0.001) TCGA-44-4112-01 7 142111591 142111591 T G TRBV5-7 Missense_Mutation p.T49P 0.69 tolerated(0.31) benign(0.108) TCGA-44-4112-01 7 142459828 142459828 C A PRSS1 Missense_Mutation p.T135N 0.72 deleterious(0.03) benign(0.075) TCGA-44-4112-01 7 142561909 142561909 G A EPHB6 Silent p.L117L 0.10 TCGA-44-4112-01 7 147914552 147914552 C G CNTNAP2 Silent p.P1061P 0.38 TCGA-44-4112-01 7 150645550 150645550 G C KCNH2 Missense_Mutation p.R892G 0.30 tolerated(0.05) possibly_damaging(0.758) TCGA-44-4112-01 7 153584728 153584728 C - DPP6 5'UTR 0.25 TCGA-44-4112-01 7 153584797 153584797 C T DPP6 Missense_Mutation p.A10V 0.17 tolerated(0.27) benign(0) TCGA-44-4112-01 7 154862701 154862701 C G HTR5A Missense_Mutation p.P31R 0.22 tolerated(0.15) benign(0.001) TCGA-44-4112-01 7 157997861 157997861 A C PTPRN2 Splice_Site p.X127_splice 0.31 TCGA-44-4112-01 7 17375399 17375399 G C AHR Missense_Mutation p.Q383H 0.14 tolerated(0.1) benign(0.189) TCGA-44-4112-01 7 30793406 30793406 C G INMT Missense_Mutation p.L72V 0.06 deleterious(0.04) probably_damaging(0.998) TCGA-44-4112-01 7 32209435 32209435 C A PDE1C Missense_Mutation p.Q90H 0.46 tolerated(0.12) possibly_damaging(0.453) TCGA-44-4112-01 7 34867133 34867133 T A NPSR1 Missense_Mutation p.L200Q 0.19 tolerated(0.34) possibly_damaging(0.877) TCGA-44-4112-01 7 42005727 42005727 C A GLI3 Missense_Mutation p.G982W 0.25 deleterious(0) probably_damaging(0.997) TCGA-44-4112-01 7 42958951 42958951 C T PSMA2 Intron 0.06 TCGA-44-4112-01 7 43447290 43447290 A T HECW1 Missense_Mutation p.K254M 0.51 deleterious(0.05) possibly_damaging(0.89) TCGA-44-4112-01 7 48318349 48318349 G T ABCA13 Missense_Mutation p.D2520Y 0.48 probably_damaging(0.935) TCGA-44-4112-01 7 48550739 48550739 A T ABCA13 Silent p.T4528T 0.25 TCGA-44-4112-01 7 5103997 5103997 C T RBAK Missense_Mutation p.L304F 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-44-4112-01 7 55912411 55912411 C A SEPT14 Missense_Mutation p.G59V 0.23 deleterious(0) probably_damaging(1) TCGA-44-4112-01 7 81331986 81331986 G T HGF Missense_Mutation p.P700T 0.72 tolerated(0.65) benign(0.281) TCGA-44-4112-01 7 81594951 81594951 C A CACNA2D1 Missense_Mutation p.G845W 0.29 deleterious(0) probably_damaging(0.997) TCGA-44-4112-01 7 93518469 93518469 T C TFPI2 Missense_Mutation p.Y113C 0.27 deleterious(0) probably_damaging(0.98) TCGA-44-4112-01 7 98995497 98995497 C T PDAP1 Missense_Mutation p.E159K 0.06 tolerated(0.14) possibly_damaging(0.874) TCGA-44-4112-01 8 101075826 101075826 C G RGS22 Missense_Mutation p.E390D 0.11 tolerated(0.18) benign(0.033) TCGA-44-4112-01 8 10468146 10468146 C A RP1L1 Silent p.S1154S 0.41 TCGA-44-4112-01 8 11188891 11188891 C T SLC35G5 Silent p.D92D 0.30 TCGA-44-4112-01 8 113421167 113421167 G T CSMD3 Silent p.S1830S 0.33 TCGA-44-4112-01 8 113657364 113657364 C T CSMD3 Nonsense_Mutation p.W1095* 0.37 TCGA-44-4112-01 8 116430678 116430678 C T TRPS1 Silent p.R901R 0.34 TCGA-44-4112-01 8 116631413 116631413 C A TRPS1 Silent p.L304L 0.34 TCGA-44-4112-01 8 121170441 121170441 G C COL14A1 Missense_Mutation p.R54T 0.38 tolerated(0.11) possibly_damaging(0.559) TCGA-44-4112-01 8 129162381 129162381 C G MIR1208 RNA 0.05 TCGA-44-4112-01 8 132052591 132052591 G C ADCY8 5'UTR 0.37 TCGA-44-4112-01 8 139890364 139890364 C A COL22A1 Missense_Mutation p.G96V 0.47 unknown(0) TCGA-44-4112-01 8 144332252 144332252 C T ZFP41 Missense_Mutation p.P80L 0.50 tolerated(0.06) benign(0.182) TCGA-44-4112-01 8 144886067 144886067 C A SCRIB Missense_Mutation p.G1055V 0.56 probably_damaging(0.996) TCGA-44-4112-01 8 144998070 144998070 C A PLEC Missense_Mutation p.E2146D 0.25 unknown(0) TCGA-44-4112-01 8 145160669 145160669 G T MAF1 Missense_Mutation p.R28M 0.21 deleterious(0) probably_damaging(0.997) TCGA-44-4112-01 8 1581027 1581027 C A DLGAP2 Missense_Mutation p.S462Y 0.13 deleterious(0) probably_damaging(0.991) TCGA-44-4112-01 8 19709302 19709302 C T INTS10 Nonsense_Mutation p.Q707* 0.11 TCGA-44-4112-01 8 21976735 21976735 C G HR Silent p.L1013L 0.19 TCGA-44-4112-01 8 21977932 21977932 G A HR Missense_Mutation p.A900V 0.33 tolerated(0.22) benign(0.012) TCGA-44-4112-01 8 22175745 22175745 G C PIWIL2 Missense_Mutation p.S787T 0.32 tolerated(0.09) benign(0.069) TCGA-44-4112-01 8 22863618 22863618 G T RHOBTB2 Missense_Mutation p.D170Y 0.33 tolerated(0.12) possibly_damaging(0.838) TCGA-44-4112-01 8 28309761 28309761 C A FBXO16 Missense_Mutation p.G247V 0.32 tolerated(0.16) benign(0.006) TCGA-44-4112-01 8 29924385 29924385 A G TMEM66 Silent p.F250F 0.37 TCGA-44-4112-01 8 31498156 31498156 C A NRG1 Missense_Mutation p.A72E 0.34 tolerated(1) benign(0.272) TCGA-44-4112-01 8 3432521 3432521 C A CSMD1 Missense_Mutation p.Q430H 0.28 possibly_damaging(0.847) TCGA-44-4112-01 8 35606200 35606200 A C UNC5D Missense_Mutation p.Q641P 0.31 deleterious(0.03) possibly_damaging(0.811) TCGA-44-4112-01 8 36691143 36691143 C G KCNU1 Missense_Mutation p.S393C 0.39 deleterious(0) probably_damaging(0.961) TCGA-44-4112-01 8 36694374 36694374 G T KCNU1 Nonsense_Mutation p.E477* 0.38 TCGA-44-4112-01 8 39581361 39581361 C A ADAM18 Silent p.T704T 0.23 TCGA-44-4112-01 8 41551533 41551533 G A ANK1 Missense_Mutation p.R1180W 0.33 deleterious(0) possibly_damaging(0.88) TCGA-44-4112-01 8 41553923 41553923 C A ANK1 Missense_Mutation p.S1014I 0.37 deleterious(0) probably_damaging(0.998) TCGA-44-4112-01 8 41581079 41581079 C A ANK1 Nonsense_Mutation p.G295* 0.29 TCGA-44-4112-01 8 48775080 48775080 C A PRKDC Nonsense_Mutation p.E1924* 0.32 TCGA-44-4112-01 8 72754875 72754875 T C MSC 3'UTR 0.35 TCGA-44-4112-01 8 72948572 72948572 C A TRPA1 Missense_Mutation p.A836S 0.30 tolerated(0.09) probably_damaging(0.999) TCGA-44-4112-01 8 77766283 77766283 G C ZFHX4 Missense_Mutation p.A2376P 0.31 benign(0.049) TCGA-44-4112-01 8 82615028 82615028 T A ZFAND1 Nonsense_Mutation p.K237* 0.31 TCGA-44-4112-01 9 100823258 100823258 C T NANS Silent p.F109F 0.10 TCGA-44-4112-01 9 104319803 104319803 G T RNF20 Missense_Mutation p.K769N 0.37 deleterious(0) possibly_damaging(0.76) TCGA-44-4112-01 9 107288801 107288801 C T OR13C4 Silent p.S230S 0.28 TCGA-44-4112-01 9 114820914 114820914 C T SUSD1 Missense_Mutation p.D635N 0.14 tolerated(0.07) possibly_damaging(0.776) TCGA-44-4112-01 9 125145835 125145835 G T PTGS1 Silent p.V270V 0.32 TCGA-44-4112-01 9 138713801 138713801 C A CAMSAP1 Silent p.L902L 0.33 TCGA-44-4112-01 9 14812842 14812842 A T FREM1 Missense_Mutation p.V954D 0.35 deleterious(0) probably_damaging(0.954) TCGA-44-4112-01 9 19346350 19346350 G A DENND4C Missense_Mutation p.V1146I 0.12 tolerated(0.2) benign(0.002) TCGA-44-4112-01 9 21440713 21440713 C G IFNA1 Missense_Mutation p.N69K 0.17 tolerated(0.8) benign(0.044) TCGA-44-4112-01 9 32487951 32487951 G A DDX58 Silent p.L402L 0.34 TCGA-44-4112-01 9 34621452 34621452 C A ARID3C 3'UTR 0.29 TCGA-44-4112-01 9 35650214 35650214 G T SIT1 Missense_Mutation p.D108E 0.38 tolerated(0.61) benign(0.003) TCGA-44-4112-01 9 35718871 35718871 C A TLN1 Missense_Mutation p.G645C 0.38 deleterious(0) probably_damaging(1) TCGA-44-4112-01 9 38395968 38395968 G T ALDH1B1 Missense_Mutation p.D75Y 0.32 deleterious(0) probably_damaging(1) TCGA-44-4112-01 9 38395969 38395969 A G ALDH1B1 Missense_Mutation p.D75G 0.32 deleterious(0.03) probably_damaging(0.998) TCGA-44-4112-01 9 43629263 43629263 C G SPATA31A6 Missense_Mutation p.A83P 0.51 deleterious(0.01) possibly_damaging(0.862) TCGA-44-4112-01 9 4662873 4662873 G C PPAPDC2 Silent p.L166L 0.23 TCGA-44-4112-01 9 5762559 5762559 A G KIAA1432 Missense_Mutation p.I671V 0.35 deleterious(0.01) benign(0.093) TCGA-44-4112-01 9 70177795 70177796 CC ACG FOXD4L5 Frame_Shift_Ins p.R63Pfs*20 0.09 TCGA-44-4112-01 9 72082745 72082745 C A APBA1 Missense_Mutation p.R492S 0.13 deleterious(0) benign(0.328) TCGA-44-4112-01 9 73399169 73399169 C A TRPM3 Missense_Mutation p.A334S 0.38 tolerated(0.06) probably_damaging(0.997) TCGA-44-4112-01 9 74300223 74300223 C A TMEM2 Missense_Mutation p.V1348L 0.29 tolerated(0.92) benign(0) TCGA-44-4112-01 9 78937970 78937970 T G PCSK5 Missense_Mutation p.C1342G 0.42 deleterious(0) probably_damaging(0.999) TCGA-44-4112-01 9 84532536 84532536 G C SPATA31D5P RNA 0.04 TCGA-44-4112-01 X 101615453 101615453 C A NXF2B 3'UTR 0.36 TCGA-44-4112-01 X 114242640 114242640 C G IL13RA2 Splice_Site p.X285_splice 0.09 TCGA-44-4112-01 X 117819891 117819891 C T DOCK11 3'UTR 0.25 TCGA-44-4112-01 X 124097430 124097430 T G TENM1 Missense_Mutation p.N58T 0.54 deleterious_low_confidence(0.03) possibly_damaging(0.708) TCGA-44-4112-01 X 131228118 131228118 G T FRMD7 Missense_Mutation p.P112T 0.39 tolerated(1) probably_damaging(1) TCGA-44-4112-01 X 134856884 134856884 A G CT45A1 3'UTR 0.08 TCGA-44-4112-01 X 141293069 141293069 G T MAGEC2 5'UTR 0.30 TCGA-44-4112-01 X 150794000 150794000 C G PASD1 Silent p.L209L 0.18 TCGA-44-4112-01 X 151303881 151303881 G T MAGEA10 Missense_Mutation p.P71Q 0.51 tolerated(0.24) benign(0.158) TCGA-44-4112-01 X 153130579 153130579 C A L1CAM Missense_Mutation p.G946C 0.54 deleterious(0) probably_damaging(1) TCGA-44-4112-01 X 153588257 153588257 G C FLNA Silent p.A1274A 0.53 TCGA-44-4112-01 X 153688837 153688837 C T PLXNA3 Missense_Mutation p.A105V 0.09 tolerated(0.19) benign(0.007) TCGA-44-4112-01 X 47028850 47028850 G T RBM10 Nonsense_Mutation p.E52* 0.46 TCGA-44-4112-01 X 54228436 54228436 A T WNK3 Missense_Mutation p.N1687K 0.08 deleterious(0.01) probably_damaging(0.954) TCGA-44-4112-01 X 54776266 54776266 C T ITIH6 3'UTR 0.62 TCGA-44-4112-01 X 70514295 70514295 A - NONO Frame_Shift_Del p.G191Afs*25 0.37 TCGA-44-4112-01 X 88008704 88008704 C G CPXCR1 Missense_Mutation p.P97A 0.49 deleterious(0.02) possibly_damaging(0.908) TCGA-44-4112-01 X 89177108 89177108 G T TGIF2LX Silent p.P8P 0.47 TCGA-44-5643-01 10 101458472 101458472 G C ENTPD7 Missense_Mutation p.A398P 0.16 tolerated(0.27) possibly_damaging(0.808) TCGA-44-5643-01 10 116056837 116056837 G A AFAP1L2 Missense_Mutation p.S777F 0.29 deleterious(0.03) benign(0.017) TCGA-44-5643-01 10 118231353 118231353 C A PNLIPRP3 Silent p.G378G 0.28 TCGA-44-5643-01 10 118451919 118451919 C T HSPA12A Silent p.T202T 0.26 TCGA-44-5643-01 10 134015457 134015457 G A DPYSL4 Missense_Mutation p.G373E 0.13 deleterious(0.01) possibly_damaging(0.604) TCGA-44-5643-01 10 15689005 15689005 T C ITGA8 Silent p.E349E 0.31 TCGA-44-5643-01 10 37506654 37506654 A G ANKRD30A Missense_Mutation p.R983G 0.18 deleterious(0) possibly_damaging(0.587) TCGA-44-5643-01 10 73569657 73569657 C T CDH23 Nonsense_Mutation p.R695* 0.18 TCGA-44-5643-01 10 84738738 84738738 G C NRG3 Missense_Mutation p.R482T 0.15 deleterious(0.04) possibly_damaging(0.857) TCGA-44-5643-01 10 88441312 88441312 C T LDB3 Silent p.S147S 0.21 TCGA-44-5643-01 10 97081774 97081774 G A SORBS1 Missense_Mutation p.P1215L 0.29 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-44-5643-01 10 98799806 98799806 G A SLIT1 Nonsense_Mutation p.R746* 0.37 TCGA-44-5643-01 11 122953875 122953875 G A CLMP Silent p.T199T 0.36 TCGA-44-5643-01 11 1269012 1269012 G T MUC5B Silent p.V3634V 0.33 TCGA-44-5643-01 11 17124380 17124380 T A PIK3C2A Splice_Site p.X1228_splice 0.23 TCGA-44-5643-01 11 22364898 22364898 C T SLC17A6 Silent p.L149L 0.28 TCGA-44-5643-01 11 27390166 27390166 G C LGR4 Missense_Mutation p.P702A 0.32 tolerated(0.76) benign(0.002) TCGA-44-5643-01 11 30033077 30033077 G T KCNA4 Silent p.S383S 0.36 TCGA-44-5643-01 11 4903460 4903460 T - OR51T1 Frame_Shift_Del p.L138Cfs*8 0.25 TCGA-44-5643-01 11 55063064 55063064 C A TRIM51HP RNA 0.27 TCGA-44-5643-01 11 55063065 55063065 C A TRIM51HP RNA 0.27 TCGA-44-5643-01 11 56344632 56344632 C A OR5M10 Missense_Mutation p.C189F 0.26 deleterious(0) probably_damaging(1) TCGA-44-5643-01 11 66189682 66189682 A C NPAS4 Silent p.T89T 0.46 TCGA-44-5643-01 11 66191054 66191054 G C NPAS4 Missense_Mutation p.E272Q 0.36 tolerated(0.08) possibly_damaging(0.588) TCGA-44-5643-01 11 66192248 66192248 G T NPAS4 Missense_Mutation p.Q629H 0.44 deleterious(0.03) benign(0.346) TCGA-44-5643-01 11 70049737 70049737 G T FADD Missense_Mutation p.G58W 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-44-5643-01 11 89891357 89891357 C T NAALAD2 Nonsense_Mutation p.R281* 0.30 TCGA-44-5643-01 12 10954186 10954186 T C TAS2R7 3'UTR 0.52 TCGA-44-5643-01 12 121790215 121790215 G C ANAPC5 5'UTR 0.26 TCGA-44-5643-01 12 123067518 123067518 A G KNTC1 Silent p.A1083A 0.62 TCGA-44-5643-01 12 21590695 21590695 G A PYROXD1 Missense_Mutation p.G11R 0.12 deleterious_low_confidence(0.01) benign(0.307) TCGA-44-5643-01 12 52627141 52627141 G A KRT7 Missense_Mutation p.G21S 0.52 tolerated(0.22) benign(0.065) TCGA-44-5643-01 12 7066919 7066919 C T PTPN6 Missense_Mutation p.R393C 0.10 deleterious(0) probably_damaging(1) TCGA-44-5643-01 12 8211356 8211356 C G C3AR1 Missense_Mutation p.E476Q 0.54 deleterious(0.02) benign(0.308) TCGA-44-5643-01 13 20411849 20411849 T A ZMYM5 Nonsense_Mutation p.K329* 0.32 TCGA-44-5643-01 13 41894957 41894957 C A NAA16 Nonsense_Mutation p.Y133* 0.39 TCGA-44-5643-01 13 53617300 53617300 G T OLFM4 Missense_Mutation p.A211S 0.39 tolerated(0.11) benign(0.033) TCGA-44-5643-01 13 70371027 70371027 G T KLHL1 Silent p.G494G 0.10 TCGA-44-5643-01 14 20216063 20216063 G A OR4Q3 Missense_Mutation p.M159I 0.12 tolerated(0.48) benign(0.022) TCGA-44-5643-01 14 20529107 20529107 C T OR4L1 Missense_Mutation p.R302W 0.27 tolerated(0.24) benign(0.002) TCGA-44-5643-01 14 21873432 21873432 C A CHD8 Missense_Mutation p.M1081I 0.50 tolerated(0.22) benign(0.065) TCGA-44-5643-01 14 69256784 69256784 G C ZFP36L1 Missense_Mutation p.F161L 0.43 deleterious(0) probably_damaging(0.997) TCGA-44-5643-01 14 79433607 79433607 G A NRXN3 Missense_Mutation p.S572N 0.46 deleterious(0.01) possibly_damaging(0.651) TCGA-44-5643-01 15 101567857 101567857 C T LRRK1 Silent p.Y847Y 0.44 TCGA-44-5643-01 15 20489448 20489448 G A CHEK2P2 RNA 0.06 TCGA-44-5643-01 15 22369133 22369133 G T OR4M2 Silent p.R186R 0.07 TCGA-44-5643-01 15 23932094 23932094 C G NDN Missense_Mutation p.A91P 0.34 tolerated(0.25) benign(0.004) TCGA-44-5643-01 15 25427429 25427429 G T SNORD115-6 3'Flank 0.28 TCGA-44-5643-01 15 28447621 28447621 C G HERC2 Missense_Mutation p.R2451P 0.13 benign(0.222) TCGA-44-5643-01 15 30053374 30053374 G A TJP1 Silent p.S326S 0.26 TCGA-44-5643-01 15 34355794 34355794 C A CHRM5 Silent p.A292A 0.29 TCGA-44-5643-01 15 74704231 74704231 C T SEMA7A Missense_Mutation p.E473K 0.27 tolerated(0.83) benign(0.005) TCGA-44-5643-01 15 76075401 76075401 A C RN7SL319P 5'Flank 0.31 TCGA-44-5643-01 16 17232349 17232349 C T XYLT1 Missense_Mutation p.D543N 0.35 tolerated(0.1) possibly_damaging(0.679) TCGA-44-5643-01 16 1818265 1818265 G A MAPK8IP3 Missense_Mutation p.D1209N 0.37 deleterious(0.02) probably_damaging(0.959) TCGA-44-5643-01 16 1994859 1994859 C T RPL3L Silent p.P401P 0.22 TCGA-44-5643-01 16 3294567 3294567 A G MEFV Silent p.P544P 0.06 TCGA-44-5643-01 16 50765750 50765750 G A NOD2 3'UTR 0.26 TCGA-44-5643-01 16 51171060 51171060 C A SALL1 Missense_Mutation p.R1313L 0.47 tolerated(0.07) benign(0.38) TCGA-44-5643-01 16 89245975 89245975 T C CDH15 Missense_Mutation p.L65P 0.32 deleterious(0) probably_damaging(1) TCGA-44-5643-01 17 28791658 28791658 C T CPD Silent p.C1323C 0.21 TCGA-44-5643-01 17 42849012 42849012 G A ADAM11 Missense_Mutation p.A148T 0.20 deleterious(0) probably_damaging(0.997) TCGA-44-5643-01 17 58127025 58127025 C T HEATR6 Silent p.G821G 0.30 TCGA-44-5643-01 17 70117755 70117755 G A SOX9 Missense_Mutation p.E75K 0.33 deleterious(0) possibly_damaging(0.683) TCGA-44-5643-01 17 74150240 74150240 T A RNF157 Intron 0.27 TCGA-44-5643-01 17 78811791 78811791 G A RPTOR Silent p.A402A 0.25 TCGA-44-5643-01 17 80159587 80159587 G A CCDC57 Silent p.F78F 0.20 TCGA-44-5643-01 18 3142040 3142040 G T MYOM1 Missense_Mutation p.P641Q 0.18 deleterious(0) probably_damaging(1) TCGA-44-5643-01 18 34174788 34174788 C A FHOD3 Silent p.L215L 0.45 TCGA-44-5643-01 19 18329147 18329147 G A PDE4C Silent p.L409L 0.34 TCGA-44-5643-01 19 24010212 24010212 C A RPSAP58 Silent p.G83G 0.59 TCGA-44-5643-01 19 36590345 36590345 G T WDR62 Missense_Mutation p.K855N 0.08 tolerated(0.15) possibly_damaging(0.777) TCGA-44-5643-01 19 43430783 43430783 C G PSG7 Missense_Mutation p.K265N 0.26 tolerated(0.06) benign(0.098) TCGA-44-5643-01 19 47597309 47597309 G C ZC3H4 Missense_Mutation p.S137C 0.23 probably_damaging(0.991) TCGA-44-5643-01 19 55331433 55331433 A T KIR3DL1 Silent p.S207S 0.69 TCGA-44-5643-01 19 56688495 56688495 C T GALP Silent p.V6V 0.45 TCGA-44-5643-01 19 7607476 7607476 G A PNPLA6 Missense_Mutation p.D437N 0.37 tolerated(0.25) benign(0.087) TCGA-44-5643-01 19 7964661 7964661 G A LRRC8E Silent p.R418R 0.38 TCGA-44-5643-01 19 9048804 9048804 C A MUC16 Missense_Mutation p.A10943S 0.27 benign(0.044) TCGA-44-5643-01 1 108700189 108700189 T C SLC25A24 Silent p.E188E 0.53 TCGA-44-5643-01 1 12186060 12186060 C T TNFRSF8 Silent p.S402S 0.46 TCGA-44-5643-01 1 148252093 148252093 C A NBPF20 Nonsense_Mutation p.E4550* 0.14 TCGA-44-5643-01 1 158576834 158576834 C T OR10Z1 Silent p.L202L 0.36 TCGA-44-5643-01 1 179064160 179064160 C G TOR3A Missense_Mutation p.P334R 0.34 deleterious(0) probably_damaging(0.947) TCGA-44-5643-01 1 190067324 190067324 G - BRINP3 Frame_Shift_Del p.R709Vfs*2 0.31 TCGA-44-5643-01 1 197071942 197071942 G T ASPM Missense_Mutation p.Q2147K 0.38 deleterious(0.02) possibly_damaging(0.824) TCGA-44-5643-01 1 2234506 2234506 C T SKI Silent p.S353S 0.39 TCGA-44-5643-01 1 24447964 24447964 G A IL22RA1 Silent p.A352A 0.22 TCGA-44-5643-01 1 66102281 66102281 C A LEPR Missense_Mutation p.S1027R 0.38 tolerated(0.09) benign(0.013) TCGA-44-5643-01 20 19677462 19677462 C A SLC24A3 Missense_Mutation p.L505M 0.31 deleterious(0.03) possibly_damaging(0.841) TCGA-44-5643-01 21 15918655 15918655 G T SAMSN1 Intron 0.38 TCGA-44-5643-01 22 25158424 25158424 G A PIWIL3 Missense_Mutation p.R15C 0.40 tolerated(0.09) unknown(0) TCGA-44-5643-01 2 115200395 115200395 C T DPP10 Nonsense_Mutation p.Q14* 0.28 TCGA-44-5643-01 2 11593783 11593783 C T E2F6 Missense_Mutation p.R102K 0.19 deleterious(0) probably_damaging(0.988) TCGA-44-5643-01 2 11750922 11750922 G A GREB1 Silent p.S925S 0.22 TCGA-44-5643-01 2 144899585 144899585 T A GTDC1 Missense_Mutation p.N129Y 0.28 deleterious(0) probably_damaging(1) TCGA-44-5643-01 2 160636571 160636571 C T LY75-CD302 Nonsense_Mutation p.W1779* 0.29 TCGA-44-5643-01 2 160637477 160637477 C G LY75-CD302 Missense_Mutation p.E1712Q 0.27 deleterious(0.01) probably_damaging(0.993) TCGA-44-5643-01 2 170030461 170030461 C G LRP2 Missense_Mutation p.G3661A 0.29 probably_damaging(1) TCGA-44-5643-01 2 179449635 179449635 G A TTN Missense_Mutation p.S21578F 0.22 TCGA-44-5643-01 2 191235886 191235886 G T INPP1 Missense_Mutation p.A320S 0.37 deleterious(0.02) benign(0.417) TCGA-44-5643-01 2 204030957 204030957 G - NBEAL1 Frame_Shift_Del p.G1905Afs*3 0.11 TCGA-44-5643-01 2 207406809 207406809 A G ADAM23 Missense_Mutation p.R203G 0.15 deleterious(0) possibly_damaging(0.755) TCGA-44-5643-01 2 217142512 217142512 C A MARCH4 Missense_Mutation p.A250S 0.17 tolerated(0.06) benign(0.411) TCGA-44-5643-01 2 219900114 219900114 T G CCDC108 Intron 0.19 TCGA-44-5643-01 2 227663232 227663232 G A IRS1 Missense_Mutation p.R75W 0.17 deleterious(0) possibly_damaging(0.806) TCGA-44-5643-01 2 242572493 242572493 C A THAP4 Missense_Mutation p.C360F 0.24 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-44-5643-01 2 242742902 242742902 C T GAL3ST2 Missense_Mutation p.S173L 0.23 deleterious(0.01) possibly_damaging(0.842) TCGA-44-5643-01 2 24533250 24533250 C T ITSN2 Splice_Site p.X186_splice 0.22 TCGA-44-5643-01 2 29150465 29150465 A G WDR43 Missense_Mutation p.K402E 0.35 deleterious(0.02) probably_damaging(0.96) TCGA-44-5643-01 2 68544214 68544214 G A CNRIP1 Intron 0.26 TCGA-44-5643-01 2 80646672 80646672 G A CTNNA2 Silent p.K412K 0.19 TCGA-44-5643-01 2 80646673 80646673 G T CTNNA2 Nonsense_Mutation p.E413* 0.18 TCGA-44-5643-01 2 89399370 89399370 T C IGKV1-16 Silent p.Q111Q 0.32 TCGA-44-5643-01 3 126219701 126219701 C T UROC1 Missense_Mutation p.E388K 0.67 tolerated(0.15) benign(0.043) TCGA-44-5643-01 3 147114065 147114065 C A ZIC4 Missense_Mutation p.A138S 0.46 tolerated(0.14) benign(0.166) TCGA-44-5643-01 3 164735446 164735446 C A SI Missense_Mutation p.V1217F 0.17 tolerated(0.2) benign(0.443) TCGA-44-5643-01 3 169487268 169487268 G C ACTRT3 Missense_Mutation p.S14W 0.20 deleterious(0) probably_damaging(1) TCGA-44-5643-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.55 deleterious(0.02) probably_damaging(0.959) TCGA-44-5643-01 3 197444857 197444857 G C KIAA0226 Missense_Mutation p.I70M 0.14 tolerated(0.08) probably_damaging(0.949) TCGA-44-5643-01 3 42956829 42956829 C T ZNF662 Missense_Mutation p.H448Y 0.33 tolerated_low_confidence(0.12) benign(0.003) TCGA-44-5643-01 4 113348782 113348782 C T ALPK1 Silent p.N252N 0.23 TCGA-44-5643-01 4 177077246 177077246 C A WDR17 Nonsense_Mutation p.S850* 0.32 TCGA-44-5643-01 4 177241123 177241123 G A SPCS3 5'UTR 0.33 TCGA-44-5643-01 4 177241124 177241124 G A SPCS3 5'UTR 0.37 TCGA-44-5643-01 4 20568974 20568974 G T SLIT2 Missense_Mutation p.D939Y 0.32 deleterious(0.01) benign(0.424) TCGA-44-5643-01 4 52861875 52861875 G A LRRC66 Missense_Mutation p.P438L 0.30 deleterious(0.03) benign(0.063) TCGA-44-5643-01 5 134364901 134364901 G T PITX1 Nonsense_Mutation p.Y171* 0.31 TCGA-44-5643-01 5 13850862 13850862 T A DNAH5 Missense_Mutation p.E1671D 0.32 possibly_damaging(0.523) TCGA-44-5643-01 5 153382469 153382469 C T FAM114A2 Missense_Mutation p.E352K 0.29 tolerated(0.35) benign(0.003) TCGA-44-5643-01 5 159344165 159344165 G T ADRA1B Missense_Mutation p.V85F 0.44 deleterious(0.03) possibly_damaging(0.776) TCGA-44-5643-01 5 179020526 179020526 G A RUFY1 Missense_Mutation p.M431I 0.46 tolerated(0.12) probably_damaging(0.921) TCGA-44-5643-01 5 179734220 179734220 T A GFPT2 Missense_Mutation p.M544L 0.50 tolerated(0.81) benign(0.05) TCGA-44-5643-01 5 33892007 33892007 C T ADAMTS12 5'UTR 0.27 TCGA-44-5643-01 5 45695955 45695955 A T HCN1 Missense_Mutation p.F81I 0.20 tolerated_low_confidence(0.15) benign(0.006) TCGA-44-5643-01 5 5237117 5237117 G T ADAMTS16 Nonsense_Mutation p.G687* 0.22 TCGA-44-5643-01 5 89948210 89948210 A C GPR98 Missense_Mutation p.Q1155P 0.37 possibly_damaging(0.507) TCGA-44-5643-01 6 100395747 100395747 G A MCHR2 Nonsense_Mutation p.R95* 0.36 TCGA-44-5643-01 6 166580205 166580205 C G T Missense_Mutation p.E116Q 0.13 deleterious(0.01) probably_damaging(0.993) TCGA-44-5643-01 6 167754296 167754296 A G TTLL2 Missense_Mutation p.N303S 0.23 deleterious(0.02) benign(0.426) TCGA-44-5643-01 6 28194989 28194989 A C ZSCAN9 Missense_Mutation p.S43R 0.32 deleterious(0.01) benign(0.231) TCGA-44-5643-01 6 32797214 32797214 T C TAP2 Missense_Mutation p.E632G 0.23 deleterious(0) probably_damaging(1) TCGA-44-5643-01 6 51732854 51732854 C G PKHD1 Missense_Mutation p.V2514L 0.29 deleterious(0.01) possibly_damaging(0.701) TCGA-44-5643-01 7 100201147 100201147 A T PCOLCE Missense_Mutation p.I64F 0.58 deleterious(0) benign(0.431) TCGA-44-5643-01 7 101870706 101870706 A C CUX1 Missense_Mutation p.S1075R 0.51 deleterious(0.01) unknown(0) TCGA-44-5643-01 7 103801549 103801549 C A ORC5 Missense_Mutation p.V374F 0.53 deleterious(0) probably_damaging(0.951) TCGA-44-5643-01 7 105636781 105636781 G A CDHR3 Missense_Mutation p.E232K 0.57 tolerated(0.11) probably_damaging(0.997) TCGA-44-5643-01 7 132481310 132481310 C A CHCHD3 Missense_Mutation p.D185Y 0.13 deleterious(0) probably_damaging(0.991) TCGA-44-5643-01 7 134939900 134939900 G C STRA8 Missense_Mutation p.E281Q 0.13 deleterious(0.01) probably_damaging(0.948) TCGA-44-5643-01 7 137151674 137151674 G A DGKI Intron 0.13 TCGA-44-5643-01 7 141734499 141734499 G C MGAM Missense_Mutation p.R606T 0.47 deleterious(0) probably_damaging(0.999) TCGA-44-5643-01 7 147336253 147336253 C T CNTNAP2 Silent p.V651V 0.28 TCGA-44-5643-01 7 88963423 88963423 G T ZNF804B Missense_Mutation p.S376I 0.46 deleterious(0.03) benign(0.021) TCGA-44-5643-01 7 98994233 98994233 G C PDAP1 3'UTR 0.17 TCGA-44-5643-01 8 113657409 113657409 G T CSMD3 Nonsense_Mutation p.S1080* 0.33 TCGA-44-5643-01 8 145622980 145622980 C T CPSF1 Missense_Mutation p.E730K 0.24 tolerated(0.46) benign(0.029) TCGA-44-5643-01 8 86360276 86360276 G T CA3 Missense_Mutation p.R226L 0.30 deleterious(0) possibly_damaging(0.866) TCGA-44-5643-01 9 123626344 123626344 C T PHF19 Silent p.L317L 0.46 TCGA-44-5643-01 9 123632765 123632765 G A PHF19 Missense_Mutation p.S107L 0.05 deleterious(0.05) benign(0.009) TCGA-44-5643-01 9 32635526 32635526 C A TAF1L Missense_Mutation p.A18S 0.52 deleterious_low_confidence(0.02) probably_damaging(0.992) TCGA-44-5643-01 X 127185968 127185968 G T ACTRT1 Missense_Mutation p.P73H 0.52 deleterious(0.01) probably_damaging(0.988) TCGA-44-5643-01 X 47062565 47062565 G T UBA1 Silent p.V457V 0.57 TCGA-44-5643-01 X 55650322 55650322 C A FOXR2 Missense_Mutation p.P60T 0.50 tolerated(0.09) benign(0.323) TCGA-44-5643-01 X 65475972 65475972 C A HEPH Missense_Mutation p.P953H 0.54 deleterious(0) probably_damaging(1) TCGA-44-5643-01 X 91133833 91133833 T C PCDH11X Missense_Mutation p.I865T 0.44 tolerated(0.51) possibly_damaging(0.601) TCGA-44-5644-01 10 102749515 102749515 G C C10orf2 Missense_Mutation p.R453P 0.24 deleterious(0) possibly_damaging(0.745) TCGA-44-5644-01 10 108434840 108434840 A T SORCS1 Missense_Mutation p.L636Q 0.42 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 10 118386372 118386372 C T PNLIPRP2 Intron 0.29 TCGA-44-5644-01 10 118719648 118719648 T A KIAA1598 Missense_Mutation p.K89M 0.33 deleterious(0) probably_damaging(1) TCGA-44-5644-01 10 118896009 118896009 G A VAX1 Missense_Mutation p.R135W 0.24 deleterious(0) unknown(0) TCGA-44-5644-01 10 122349007 122349007 C A PPAPDC1A Missense_Mutation p.P270Q 0.45 deleterious_low_confidence(0.02) probably_damaging(0.916) TCGA-44-5644-01 10 124672368 124672368 C A FAM24A Silent p.T72T 0.30 TCGA-44-5644-01 10 124753978 124753978 C G IKZF5 Missense_Mutation p.R193T 0.26 deleterious(0) probably_damaging(0.95) TCGA-44-5644-01 10 125426162 125426162 G C GPR26 Missense_Mutation p.R80P 0.88 deleterious(0.01) possibly_damaging(0.841) TCGA-44-5644-01 10 125506515 125506515 C A CPXM2 Missense_Mutation p.W679L 0.50 deleterious(0) probably_damaging(1) TCGA-44-5644-01 10 125506516 125506516 A G CPXM2 Missense_Mutation p.W679R 0.49 deleterious(0) probably_damaging(1) TCGA-44-5644-01 10 135193899 135193899 G C PAOX Missense_Mutation p.C193S 0.41 tolerated(0.05) probably_damaging(0.918) TCGA-44-5644-01 10 15255552 15255552 C T FAM171A1 Missense_Mutation p.A679T 0.50 deleterious(0.01) possibly_damaging(0.866) TCGA-44-5644-01 10 15256192 15256192 G T FAM171A1 Silent p.P465P 0.61 TCGA-44-5644-01 10 22699966 22699966 C A SPAG6 Missense_Mutation p.P441T 0.22 deleterious(0) probably_damaging(1) TCGA-44-5644-01 10 25839917 25839917 T C GPR158 Missense_Mutation p.Y473H 0.20 deleterious(0) probably_damaging(0.996) TCGA-44-5644-01 10 25887846 25887846 G C GPR158 Missense_Mutation p.E1097D 0.23 tolerated(0.64) benign(0.001) TCGA-44-5644-01 10 46999723 46999723 G T GPRIN2 Missense_Mutation p.R281S 0.37 tolerated(0.24) benign(0.225) TCGA-44-5644-01 10 48429305 48429305 G T GDF10 Missense_Mutation p.A194E 0.81 tolerated(0.27) benign(0.012) TCGA-44-5644-01 10 49400802 49400802 C T FRMPD2 Missense_Mutation p.G697D 0.24 tolerated(0.3) benign(0.132) TCGA-44-5644-01 10 50819209 50819209 G T SLC18A3 Missense_Mutation p.L141F 0.79 tolerated(0.92) benign(0.123) TCGA-44-5644-01 10 50857553 50857553 G T CHAT Splice_Site p.X461_splice 0.73 TCGA-44-5644-01 10 55719489 55719489 T A PCDH15 Intron 0.88 TCGA-44-5644-01 10 60272971 60272971 G T BICC1 Missense_Mutation p.S23I 0.70 deleterious_low_confidence(0.01) possibly_damaging(0.467) TCGA-44-5644-01 10 68686953 68686953 C A LRRTM3 Missense_Mutation p.D93E 0.51 deleterious(0) probably_damaging(1) TCGA-44-5644-01 10 69881364 69881364 C T MYPN Nonsense_Mutation p.Q57* 0.30 TCGA-44-5644-01 10 73551059 73551059 C T CDH23 5'Flank 0.34 TCGA-44-5644-01 10 73581676 73581676 G T PSAP Missense_Mutation p.S289Y 0.23 tolerated(0.31) benign(0.275) TCGA-44-5644-01 10 75053068 75053068 C T TTC18 Missense_Mutation p.A645T 0.55 deleterious(0) probably_damaging(0.981) TCGA-44-5644-01 10 75397562 75397562 C A MYOZ1 Missense_Mutation p.Q64H 0.44 deleterious(0) probably_damaging(0.997) TCGA-44-5644-01 10 76803615 76803615 G T DUPD1 Missense_Mutation p.L121I 0.50 tolerated(0.19) possibly_damaging(0.682) TCGA-44-5644-01 10 8100408 8100408 G T GATA3 Missense_Mutation p.G128W 0.63 deleterious(0.03) probably_damaging(0.994) TCGA-44-5644-01 10 81065309 81065309 G T ZMIZ1 Missense_Mutation p.G792C 0.06 probably_damaging(1) TCGA-44-5644-01 10 84733664 84733664 C T NRG3 Missense_Mutation p.H469Y 0.19 deleterious(0.03) possibly_damaging(0.528) TCGA-44-5644-01 10 88651967 88651967 G T BMPR1A Missense_Mutation p.G105V 0.38 deleterious(0.01) probably_damaging(1) TCGA-44-5644-01 10 91177355 91177355 C G IFIT5 Nonsense_Mutation p.Y133* 0.29 TCGA-44-5644-01 10 93773444 93773444 G T BTAF1 Missense_Mutation p.W1444C 0.58 deleterious(0) probably_damaging(1) TCGA-44-5644-01 10 94100552 94100552 G T MARCH5 Missense_Mutation p.V121L 0.60 deleterious(0.04) benign(0.007) TCGA-44-5644-01 10 94230104 94230104 T A IDE Splice_Site p.X706_splice 0.25 TCGA-44-5644-01 10 94828077 94828077 G T CYP26C1 Missense_Mutation p.G398C 0.20 deleterious(0) probably_damaging(1) TCGA-44-5644-01 10 95148894 95148894 C A MYOF Nonsense_Mutation p.E492* 0.44 TCGA-44-5644-01 11 105009808 105009808 G T CARD18 Intron 0.22 TCGA-44-5644-01 11 105623799 105623799 C A GRIA4 Missense_Mutation p.H114N 0.16 tolerated(0.06) probably_damaging(0.983) TCGA-44-5644-01 11 107663485 107663485 C A SLC35F2 Silent p.V327V 0.35 TCGA-44-5644-01 11 112071445 112071445 G C BCO2 Missense_Mutation p.W325C 0.55 deleterious(0) probably_damaging(0.998) TCGA-44-5644-01 11 113269850 113269850 G T ANKK1 Missense_Mutation p.D387Y 0.27 deleterious(0.01) possibly_damaging(0.836) TCGA-44-5644-01 11 113631282 113631282 C G ZW10 Missense_Mutation p.A125P 0.19 deleterious(0.01) possibly_damaging(0.721) TCGA-44-5644-01 11 113775588 113775588 G T HTR3B 5'UTR 0.24 TCGA-44-5644-01 11 116692386 116692386 C A APOA4 Nonsense_Mutation p.E130* 0.42 TCGA-44-5644-01 11 116693874 116693874 G T APOA4 Missense_Mutation p.L12M 0.42 deleterious(0) unknown(0) TCGA-44-5644-01 11 120298883 120298883 C T ARHGEF12 Missense_Mutation p.P171L 0.55 deleterious(0) benign(0.17) TCGA-44-5644-01 11 1217654 1217654 C A MUC5AC RNA 0.42 TCGA-44-5644-01 11 123754046 123754046 G C TMEM225 Silent p.L159L 0.20 TCGA-44-5644-01 11 123847819 123847819 C A OR10S1 Missense_Mutation p.D194Y 0.55 deleterious(0) probably_damaging(1) TCGA-44-5644-01 11 123847878 123847878 G T OR10S1 Missense_Mutation p.T174N 0.47 deleterious(0) probably_damaging(0.987) TCGA-44-5644-01 11 123894513 123894513 A T OR10G9 Missense_Mutation p.D265V 0.57 tolerated(0.21) benign(0.367) TCGA-44-5644-01 11 124189924 124189924 G T OR8D2 Missense_Mutation p.P57H 0.23 deleterious(0) benign(0.001) TCGA-44-5644-01 11 124621372 124621372 C A VSIG2 Missense_Mutation p.A56S 0.32 tolerated(0.52) possibly_damaging(0.855) TCGA-44-5644-01 11 1253924 1253924 C A MUC5B Nonsense_Mutation p.C663* 0.50 TCGA-44-5644-01 11 1263868 1263868 A C MUC5B Missense_Mutation p.T1920P 0.34 unknown(0) TCGA-44-5644-01 11 128846491 128846491 C A ARHGAP32 Nonsense_Mutation p.E707* 0.56 TCGA-44-5644-01 11 129775622 129775622 T C PRDM10 Missense_Mutation p.M1064V 0.65 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-44-5644-01 11 129814700 129814700 C G PRDM10 Missense_Mutation p.G243A 0.23 tolerated(0.4) benign(0.004) TCGA-44-5644-01 11 130781541 130781541 T C SNX19 Silent p.R600R 0.36 TCGA-44-5644-01 11 13435091 13435091 T G BTBD10 Missense_Mutation p.K265T 0.35 deleterious(0.01) possibly_damaging(0.704) TCGA-44-5644-01 11 1643060 1643060 C T KRTAP5-4 Silent p.K88K 0.21 TCGA-44-5644-01 11 16848101 16848101 C A PLEKHA7 Missense_Mutation p.Q303H 0.40 deleterious(0.01) possibly_damaging(0.862) TCGA-44-5644-01 11 17794198 17794198 T C KCNC1 Intron 0.35 TCGA-44-5644-01 11 18956376 18956376 G T MRGPRX1 5'UTR 0.29 TCGA-44-5644-01 11 194568 194568 C T SCGB1C1 3'UTR 0.66 TCGA-44-5644-01 11 19854036 19854036 A T NAV2 Missense_Mutation p.T92S 0.45 deleterious(0) probably_damaging(0.994) TCGA-44-5644-01 11 20066722 20066722 A T NAV2 Silent p.T1159T 0.27 TCGA-44-5644-01 11 20409612 20409612 G T PRMT3 Missense_Mutation p.D26Y 0.34 possibly_damaging(0.898) TCGA-44-5644-01 11 30032812 30032812 T A KCNA4 Nonsense_Mutation p.R472* 0.18 TCGA-44-5644-01 11 3114885 3114885 G A OSBPL5 Silent p.D606D 0.40 TCGA-44-5644-01 11 40136544 40136544 C A LRRC4C Silent p.G433G 0.18 TCGA-44-5644-01 11 4615655 4615655 C T OR52I1 Silent p.A129A 0.32 TCGA-44-5644-01 11 4661045 4661045 C T OR51D1 Missense_Mutation p.P9S 0.28 tolerated(0.16) benign(0.003) TCGA-44-5644-01 11 47360203 47360203 G A MYBPC3 Missense_Mutation p.R726C 0.77 deleterious(0) probably_damaging(0.939) TCGA-44-5644-01 11 4967892 4967892 C A OR51A4 Missense_Mutation p.G147W 0.11 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 11 4976505 4976505 C A OR51A2 Missense_Mutation p.G147W 0.63 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 11 49974145 49974145 G A OR4C13 Missense_Mutation p.M57I 0.52 deleterious_low_confidence(0.01) benign(0.167) TCGA-44-5644-01 11 51412250 51412250 G T OR4A5 Missense_Mutation p.A49D 0.27 deleterious_low_confidence(0.04) benign(0.365) TCGA-44-5644-01 11 5474973 5474973 C T OR51I2 Silent p.F85F 0.32 TCGA-44-5644-01 11 55563407 55563407 G T OR5D14 Missense_Mutation p.V126L 0.61 deleterious(0.03) benign(0.325) TCGA-44-5644-01 11 55587400 55587400 G T OR5D18 Missense_Mutation p.V99L 0.23 tolerated(0.1) benign(0.002) TCGA-44-5644-01 11 55587975 55587975 C T OR5D18 Silent p.I290I 0.51 TCGA-44-5644-01 11 55587976 55587976 T A OR5D18 Missense_Mutation p.Y291N 0.51 deleterious(0) probably_damaging(0.967) TCGA-44-5644-01 11 56043464 56043464 G T OR5T1 Missense_Mutation p.C117F 0.57 tolerated(0.07) benign(0.002) TCGA-44-5644-01 11 56409689 56409689 T A OR5AP2 Missense_Mutation p.D76V 0.20 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 11 57995623 57995624 - C OR10Q1 Frame_Shift_Ins p.A242Gfs*34 0.33 TCGA-44-5644-01 11 57995855 57995855 C T OR10Q1 Missense_Mutation p.A165T 0.21 tolerated(0.23) benign(0.013) TCGA-44-5644-01 11 5841936 5841936 G T OR52N2 Missense_Mutation p.R124L 0.30 deleterious(0.01) benign(0.022) TCGA-44-5644-01 11 59271345 59271345 A G OR4D11 Silent p.T99T 0.22 TCGA-44-5644-01 11 59368776 59368776 C G OSBP Missense_Mutation p.M368I 0.26 tolerated(0.3) benign(0.001) TCGA-44-5644-01 11 62400735 62400735 C A GANAB Missense_Mutation p.E235D 0.48 tolerated(0.29) benign(0.011) TCGA-44-5644-01 11 62430601 62430601 C G C11orf48 Nonstop_Mutation p.*264Yext*1 0.48 TCGA-44-5644-01 11 63995073 63995073 G C NUDT22 Missense_Mutation p.D172H 0.13 deleterious(0.04) possibly_damaging(0.784) TCGA-44-5644-01 11 6422868 6422868 T C APBB1 Missense_Mutation p.H478R 0.39 deleterious(0) possibly_damaging(0.495) TCGA-44-5644-01 11 64368221 64368221 G T SLC22A12 Missense_Mutation p.G470V 0.16 deleterious(0) probably_damaging(0.991) TCGA-44-5644-01 11 64497271 64497271 C A RASGRP2 Splice_Site p.X519_splice 0.25 TCGA-44-5644-01 11 64503016 64503016 C G RASGRP2 Missense_Mutation p.E432Q 0.46 deleterious(0.02) possibly_damaging(0.677) TCGA-44-5644-01 11 64756724 64756724 A T BATF2 Silent p.R234R 0.45 TCGA-44-5644-01 11 64878981 64878981 G A VPS51 Silent p.V757V 0.22 TCGA-44-5644-01 11 65746505 65746505 C T SART1 3'UTR 0.14 TCGA-44-5644-01 11 65812812 65812812 T A GAL3ST3 Silent p.L25L 0.38 TCGA-44-5644-01 11 66457400 66457400 G A SPTBN2 Missense_Mutation p.A1942V 0.35 tolerated(1) possibly_damaging(0.835) TCGA-44-5644-01 11 6661763 6661763 G T DCHS1 Missense_Mutation p.S361Y 0.27 deleterious(0.03) possibly_damaging(0.781) TCGA-44-5644-01 11 66636436 66636436 C A PC Splice_Site p.X302_splice 0.42 TCGA-44-5644-01 11 6866971 6866971 C A OR10A5 Missense_Mutation p.L20I 0.27 tolerated(0.15) possibly_damaging(0.488) TCGA-44-5644-01 11 68748244 68748244 G T MRGPRD Missense_Mutation p.A71D 0.49 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 11 6913706 6913706 A C OR2D2 Missense_Mutation p.V9G 0.35 deleterious(0.03) benign(0.077) TCGA-44-5644-01 11 69488079 69488079 C A ORAOV1 Nonsense_Mutation p.E21* 0.19 TCGA-44-5644-01 11 6953866 6953866 C T ZNF215 Silent p.T121T 0.23 TCGA-44-5644-01 11 72012963 72012963 C A CLPB Nonsense_Mutation p.E435* 0.43 TCGA-44-5644-01 11 72598594 72598594 C A FCHSD2 Missense_Mutation p.G356V 0.32 tolerated(0.27) possibly_damaging(0.747) TCGA-44-5644-01 11 78204233 78204233 G A NARS2 Missense_Mutation p.T233I 0.44 deleterious(0.03) possibly_damaging(0.58) TCGA-44-5644-01 11 78369639 78369639 G T TENM4 Silent p.R2592R 0.43 TCGA-44-5644-01 11 8009161 8009161 G A EIF3F Missense_Mutation p.G88S 0.35 tolerated(0.2) possibly_damaging(0.504) TCGA-44-5644-01 11 83180382 83180382 A T DLG2 Missense_Mutation p.D827E 0.12 deleterious(0.01) probably_damaging(0.932) TCGA-44-5644-01 11 84245718 84245718 G T DLG2 Silent p.T138T 0.49 TCGA-44-5644-01 11 88911104 88911104 G T TYR 5'UTR 0.53 TCGA-44-5644-01 11 89883769 89883769 A - NAALAD2 Frame_Shift_Del p.N202Ifs*8 0.35 TCGA-44-5644-01 11 92715432 92715432 C A MTNR1B Missense_Mutation p.P348Q 0.23 tolerated(0.68) benign(0.011) TCGA-44-5644-01 11 93800808 93800808 C - HEPHL1 Frame_Shift_Del p.R319Gfs*17 0.18 TCGA-44-5644-01 11 93913962 93913962 A G PANX1 Missense_Mutation p.N403S 0.29 tolerated(0.62) benign(0) TCGA-44-5644-01 11 94759534 94759534 C T KDM4E Silent p.T271T 0.24 TCGA-44-5644-01 12 100042044 100042044 A C FAM71C Missense_Mutation p.Q31P 0.43 deleterious(0) possibly_damaging(0.905) TCGA-44-5644-01 12 100042540 100042540 G A FAM71C Silent p.V196V 0.46 TCGA-44-5644-01 12 101436247 101436247 G T ANO4 Splice_Site p.X350_splice 0.47 TCGA-44-5644-01 12 101488070 101488070 G C ANO4 Missense_Mutation p.E545Q 0.33 deleterious(0) possibly_damaging(0.8) TCGA-44-5644-01 12 102057219 102057219 C A MYBPC1 Missense_Mutation p.P721H 0.31 deleterious(0.01) probably_damaging(1) TCGA-44-5644-01 12 104142758 104142758 C A STAB2 Missense_Mutation p.Q2088K 0.34 tolerated(0.07) probably_damaging(0.996) TCGA-44-5644-01 12 106633389 106633389 C A CKAP4 Nonsense_Mutation p.G408* 0.49 TCGA-44-5644-01 12 108985685 108985685 C T TMEM119 Missense_Mutation p.D159N 0.35 tolerated(0.22) probably_damaging(0.949) TCGA-44-5644-01 12 109520514 109520514 G T USP30 Missense_Mutation p.R305M 0.17 deleterious(0) probably_damaging(0.976) TCGA-44-5644-01 12 109719578 109719578 G T FOXN4 Silent p.R310R 0.55 TCGA-44-5644-01 12 110974676 110974676 T C PPTC7 3'UTR 0.54 TCGA-44-5644-01 12 111319093 111319093 G C CCDC63 Missense_Mutation p.R282S 0.36 tolerated(0.07) benign(0.019) TCGA-44-5644-01 12 111345233 111345233 C T CCDC63 Missense_Mutation p.P549S 0.32 tolerated_low_confidence(0.87) benign(0.01) TCGA-44-5644-01 12 112686297 112686297 C G HECTD4 Missense_Mutation p.V1178L 0.32 benign(0.063) TCGA-44-5644-01 12 11286404 11286404 A C TAS2R30 Missense_Mutation p.I147R 0.18 deleterious(0.03) benign(0.254) TCGA-44-5644-01 12 121098927 121098927 G A CABP1 Missense_Mutation p.M331I 0.54 tolerated(0.09) probably_damaging(0.969) TCGA-44-5644-01 12 123801821 123801821 A C SBNO1 Missense_Mutation p.V961G 0.16 deleterious(0) probably_damaging(0.982) TCGA-44-5644-01 12 124209239 124209239 C T ATP6V0A2 Silent p.V111V 0.23 TCGA-44-5644-01 12 125396341 125396341 T A UBC Missense_Mutation p.E659D 0.17 tolerated(0.17) possibly_damaging(0.588) TCGA-44-5644-01 12 125612781 125612781 C T AACS Missense_Mutation p.R462W 0.22 deleterious(0) probably_damaging(0.991) TCGA-44-5644-01 12 125834677 125834677 G T TMEM132B Silent p.S244S 0.33 TCGA-44-5644-01 12 126135290 126135290 C T TMEM132B Nonsense_Mutation p.Q564* 0.28 TCGA-44-5644-01 12 129360556 129360556 T A GLT1D1 Missense_Mutation p.C56S 0.16 deleterious(0.01) benign(0) TCGA-44-5644-01 12 129431967 129431967 C T GLT1D1 Silent p.S168S 0.33 TCGA-44-5644-01 12 129694181 129694181 G T TMEM132D Missense_Mutation p.L443I 0.17 deleterious(0) probably_damaging(0.996) TCGA-44-5644-01 12 130647701 130647701 G C FZD10 Missense_Mutation p.A72P 0.54 tolerated(0.2) probably_damaging(0.999) TCGA-44-5644-01 12 130963550 130963550 C T RIMBP2 Silent p.E3E 0.61 TCGA-44-5644-01 12 133209285 133209285 G T POLE Missense_Mutation p.S2034Y 0.49 deleterious(0.01) possibly_damaging(0.602) TCGA-44-5644-01 12 133226046 133226046 C A POLE Missense_Mutation p.R1284L 0.61 tolerated(0.06) benign(0.001) TCGA-44-5644-01 12 133354252 133354252 T A GOLGA3 Missense_Mutation p.Q1241L 0.39 deleterious(0.01) possibly_damaging(0.447) TCGA-44-5644-01 12 19646919 19646919 A G AEBP2 Silent p.L391L 0.50 TCGA-44-5644-01 12 21392127 21392127 G T SLCO1B1 3'UTR 0.74 TCGA-44-5644-01 12 22402033 22402033 C A ST8SIA1 Splice_Site p.X164_splice 0.83 TCGA-44-5644-01 12 2705067 2705067 C T CACNA1C Silent p.V897V 0.13 TCGA-44-5644-01 12 31577523 31577523 G T DENND5B Silent p.A779A 0.78 TCGA-44-5644-01 12 32138088 32138088 G A KIAA1551 Missense_Mutation p.S1400N 0.69 tolerated(1) benign(0.001) TCGA-44-5644-01 12 40672061 40672061 C T LRRK2 Nonsense_Mutation p.Q747* 0.91 TCGA-44-5644-01 12 45410154 45410154 G - DBX2 Frame_Shift_Del p.P312Qfs*38 0.29 TCGA-44-5644-01 12 4657954 4657954 G T RAD51AP1 Missense_Mutation p.G187C 0.88 deleterious(0.03) probably_damaging(0.992) TCGA-44-5644-01 12 4662196 4662196 G A RAD51AP1 Missense_Mutation p.D219N 0.21 deleterious(0.01) probably_damaging(0.975) TCGA-44-5644-01 12 48107062 48107062 G T ENDOU Missense_Mutation p.F287L 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-44-5644-01 12 48367956 48367956 C A COL2A1 Silent p.L1411L 0.13 TCGA-44-5644-01 12 48367957 48367957 A G COL2A1 Missense_Mutation p.L1411P 0.13 unknown(0) TCGA-44-5644-01 12 49233639 49233639 T C DDX23 Silent p.E156E 0.41 TCGA-44-5644-01 12 49390743 49390743 C A DDN Missense_Mutation p.G639V 0.57 deleterious_low_confidence(0.01) possibly_damaging(0.804) TCGA-44-5644-01 12 49459156 49459156 C A RHEBL1 Nonsense_Mutation p.E147* 0.47 TCGA-44-5644-01 12 49944096 49944096 C T KCNH3 Silent p.T634T 0.45 TCGA-44-5644-01 12 49951865 49951865 T A KCNH3 3'UTR 0.56 TCGA-44-5644-01 12 50481193 50481193 T C SMARCD1 Silent p.A193A 0.45 TCGA-44-5644-01 12 51281254 51281254 C A TMPRSS12 Silent p.I335I 0.41 TCGA-44-5644-01 12 52163671 52163671 C A SCN8A Missense_Mutation p.S1131Y 0.43 tolerated(0.07) probably_damaging(0.986) TCGA-44-5644-01 12 52452475 52452475 G C NR4A1 Missense_Mutation p.R528P 0.41 deleterious(0) possibly_damaging(0.82) TCGA-44-5644-01 12 52639225 52639225 G T KRT7 Missense_Mutation p.E338D 0.49 tolerated(1) benign(0.042) TCGA-44-5644-01 12 52799941 52799941 C T KRT82 Missense_Mutation p.G41R 0.31 tolerated(0.06) possibly_damaging(0.561) TCGA-44-5644-01 12 52865270 52865270 C T KRT6C Missense_Mutation p.E283K 0.34 deleterious(0.03) possibly_damaging(0.759) TCGA-44-5644-01 12 52913994 52913994 G T KRT5 Silent p.R29R 0.18 TCGA-44-5644-01 12 52981443 52981443 G T KRT72 Missense_Mutation p.R428S 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-44-5644-01 12 52984737 52984737 C A KRT72 Missense_Mutation p.E324D 0.42 deleterious(0) probably_damaging(0.996) TCGA-44-5644-01 12 53588066 53588066 G T ITGB7 Nonsense_Mutation p.Y408* 0.45 TCGA-44-5644-01 12 54686778 54686778 G A NFE2 Missense_Mutation p.R168W 0.43 tolerated(0.06) benign(0.425) TCGA-44-5644-01 12 57167812 57167812 C T HSD17B6 Missense_Mutation p.A59V 0.36 deleterious(0.01) possibly_damaging(0.675) TCGA-44-5644-01 12 57873156 57873156 C T ARHGAP9 Missense_Mutation p.G12R 0.36 deleterious(0.03) benign(0.028) TCGA-44-5644-01 12 58145434 58145434 C A CDK4 Missense_Mutation p.A23S 0.38 deleterious(0) probably_damaging(0.937) TCGA-44-5644-01 12 63543863 63543863 C A AVPR1A Missense_Mutation p.A252S 0.41 tolerated(0.31) benign(0.014) TCGA-44-5644-01 12 63543938 63543938 C A AVPR1A Missense_Mutation p.A227S 0.40 deleterious(0) benign(0.356) TCGA-44-5644-01 12 63543939 63543939 C A AVPR1A Silent p.V226V 0.41 TCGA-44-5644-01 12 67699690 67699691 - A CAND1 Frame_Shift_Ins p.A751Sfs*3 0.28 TCGA-44-5644-01 12 67706663 67706663 G C CAND1 3'UTR 0.57 TCGA-44-5644-01 12 69210673 69210673 G T MDM2 Missense_Mutation p.D86Y 0.48 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 12 70949882 70949882 C A PTPRB Silent p.T1587T 0.52 TCGA-44-5644-01 12 72388295 72388295 G A TPH2 Missense_Mutation p.G340S 0.49 deleterious(0) probably_damaging(1) TCGA-44-5644-01 12 75601539 75601539 G T KCNC2 Silent p.G75G 0.35 TCGA-44-5644-01 12 75895683 75895683 C A GLIPR1 3'UTR 0.44 TCGA-44-5644-01 12 77191245 77191245 G T ZDHHC17 Missense_Mutation p.G42V 0.52 deleterious(0.05) probably_damaging(0.994) TCGA-44-5644-01 12 78510663 78510663 C A NAV3 Silent p.V916V 0.44 TCGA-44-5644-01 12 78510664 78510664 C A NAV3 Missense_Mutation p.P917T 0.44 tolerated(0.18) benign(0.009) TCGA-44-5644-01 12 78515962 78515962 C A NAV3 Missense_Mutation p.S1331Y 0.40 deleterious(0) probably_damaging(0.967) TCGA-44-5644-01 12 82147851 82147851 C A PPFIA2 Silent p.R50R 0.37 TCGA-44-5644-01 12 83290354 83290354 C T TMTC2 Missense_Mutation p.A471V 0.28 tolerated(1) benign(0) TCGA-44-5644-01 12 86373770 86373770 T A MGAT4C Missense_Mutation p.E245V 0.09 deleterious(0.01) benign(0.03) TCGA-44-5644-01 12 8995901 8995901 T A A2ML1 Missense_Mutation p.Y474N 0.85 deleterious(0) probably_damaging(0.998) TCGA-44-5644-01 12 90021464 90021464 G T ATP2B1 Missense_Mutation p.R320S 0.43 tolerated(0.25) benign(0.006) TCGA-44-5644-01 12 91348150 91348150 A G CCER1 Missense_Mutation p.C124R 0.39 deleterious(0) probably_damaging(0.919) TCGA-44-5644-01 12 91572284 91572284 C T DCN Missense_Mutation p.A16T 0.32 deleterious(0) possibly_damaging(0.76) TCGA-44-5644-01 12 9268548 9268548 G T A2M 5'UTR 0.86 TCGA-44-5644-01 12 9312930 9312930 G A PZP Missense_Mutation p.A1010V 0.82 deleterious(0) benign(0.159) TCGA-44-5644-01 12 95498862 95498862 C G FGD6 Missense_Mutation p.V1140L 0.21 deleterious(0) probably_damaging(0.912) TCGA-44-5644-01 12 95867954 95867954 A T METAP2 5'UTR 0.49 TCGA-44-5644-01 12 97078951 97078951 G T C12orf55 Missense_Mutation p.E1983D 0.41 tolerated(0.4) benign(0.001) TCGA-44-5644-01 12 97147590 97147590 T A C12orf55 Missense_Mutation p.L2585H 0.37 deleterious(0) possibly_damaging(0.526) TCGA-44-5644-01 13 103514550 103514550 G T BIVM-ERCC5 Missense_Mutation p.A777S 0.35 deleterious_low_confidence(0.02) probably_damaging(0.971) TCGA-44-5644-01 13 110830546 110830546 G A COL4A1 Missense_Mutation p.P831S 0.38 possibly_damaging(0.853) TCGA-44-5644-01 13 111367799 111367799 C T ING1 Silent p.F3F 0.47 TCGA-44-5644-01 13 113052421 113052421 A G SPACA7 Silent p.P70P 0.37 TCGA-44-5644-01 13 24247545 24247545 A G TNFRSF19 3'Flank 0.87 TCGA-44-5644-01 13 24465654 24465654 G T C1QTNF9B Missense_Mutation p.S259Y 0.12 tolerated(0.47) benign(0.316) TCGA-44-5644-01 13 24895680 24895680 C A C1QTNF9 Missense_Mutation p.S259Y 0.68 deleterious(0.01) probably_damaging(0.994) TCGA-44-5644-01 13 30341775 30341775 A C UBL3 Nonsense_Mutation p.L94* 0.75 TCGA-44-5644-01 13 46584576 46584576 G C ZC3H13 Missense_Mutation p.S218C 0.88 unknown(0) TCGA-44-5644-01 13 46648091 46648091 C A CPB2 Missense_Mutation p.A170S 0.71 tolerated(0.74) benign(0.003) TCGA-44-5644-01 13 64321049 64321049 G T AL445989.1 Missense_Mutation p.G39V 0.15 unknown(0) TCGA-44-5644-01 13 73350083 73350083 C T DIS3 Missense_Mutation p.D268N 0.25 tolerated(0.12) benign(0.086) TCGA-44-5644-01 13 75863090 75863090 C A TBC1D4 Missense_Mutation p.D1215Y 0.26 deleterious(0) probably_damaging(0.911) TCGA-44-5644-01 13 75884154 75884154 C G TBC1D4 Silent p.L839L 0.24 TCGA-44-5644-01 13 84453445 84453445 G C SLITRK1 3'UTR 0.75 TCGA-44-5644-01 13 99354750 99354750 C A SLC15A1 Missense_Mutation p.G484W 0.31 deleterious(0) probably_damaging(0.998) TCGA-44-5644-01 14 106805611 106805611 C A IGHV4-31 Missense_Mutation p.A12S 0.30 tolerated_low_confidence(0.55) possibly_damaging(0.695) TCGA-44-5644-01 14 20296176 20296176 C A OR4N2 Missense_Mutation p.T190N 0.42 deleterious(0.01) possibly_damaging(0.653) TCGA-44-5644-01 14 20344870 20344870 C A OR4K2 Silent p.S148S 0.30 TCGA-44-5644-01 14 20502451 20502451 G T OR4K13 Nonsense_Mutation p.S156* 0.39 TCGA-44-5644-01 14 20529044 20529044 T A OR4L1 Missense_Mutation p.L281I 0.35 tolerated(0.31) possibly_damaging(0.481) TCGA-44-5644-01 14 20529045 20529045 T C OR4L1 Missense_Mutation p.L281S 0.35 deleterious(0.01) possibly_damaging(0.883) TCGA-44-5644-01 14 20529046 20529046 A T OR4L1 Missense_Mutation p.L281F 0.36 tolerated(0.2) benign(0.077) TCGA-44-5644-01 14 20612261 20612261 T A OR4N5 Missense_Mutation p.Y123N 0.35 deleterious(0) probably_damaging(0.954) TCGA-44-5644-01 14 21769237 21769237 C A RPGRIP1 Missense_Mutation p.Q111K 0.22 tolerated(0.73) benign(0.079) TCGA-44-5644-01 14 23871692 23871692 C A MYH6 Silent p.A374A 0.52 TCGA-44-5644-01 14 23887530 23887530 G T MYH7 Missense_Mutation p.A1353D 0.27 deleterious(0.01) probably_damaging(0.969) TCGA-44-5644-01 14 24424307 24424307 G A DHRS4 Silent p.R64R 0.24 TCGA-44-5644-01 14 24729776 24729776 G A TGM1 Missense_Mutation p.P213S 0.57 tolerated(0.06) possibly_damaging(0.559) TCGA-44-5644-01 14 32560934 32560934 A G ARHGAP5 Silent p.L353L 0.58 TCGA-44-5644-01 14 42356666 42356678 GAAGAGTTTTTGT - LRFN5 Frame_Shift_Del p.E280Vfs*13 0.60 TCGA-44-5644-01 14 50092641 50092641 A C DNAAF2 Silent p.S711S 0.16 TCGA-44-5644-01 14 53525260 53525260 C A DDHD1 Missense_Mutation p.D643Y 0.33 deleterious(0) possibly_damaging(0.771) TCGA-44-5644-01 14 57957781 57957781 C T C14orf105 Missense_Mutation p.D78N 0.17 tolerated(0.21) benign(0.146) TCGA-44-5644-01 14 58772772 58772772 T C ARID4A Silent p.D72D 0.10 TCGA-44-5644-01 14 62547902 62547902 G A SYT16 Missense_Mutation p.M448I 0.25 tolerated(0.1) benign(0.063) TCGA-44-5644-01 14 65208183 65208183 G T PLEKHG3 Missense_Mutation p.G594C 0.19 deleterious(0.01) possibly_damaging(0.878) TCGA-44-5644-01 14 71205044 71205044 C A MAP3K9 Nonsense_Mutation p.E588* 0.22 TCGA-44-5644-01 14 73683908 73683908 G - PSEN1 Frame_Shift_Del p.G402Efs*7 0.34 TCGA-44-5644-01 14 74180424 74180424 C A PNMA1 5'UTR 0.22 TCGA-44-5644-01 14 74769670 74769670 A G ABCD4 5'UTR 0.58 TCGA-44-5644-01 14 75321869 75321869 G C PROX2 Missense_Mutation p.P355R 0.25 deleterious(0) probably_damaging(1) TCGA-44-5644-01 14 75469831 75469831 C T EIF2B2 Silent p.I46I 0.19 TCGA-44-5644-01 14 76549611 76549611 G T IFT43 Silent p.A167A 0.16 TCGA-44-5644-01 14 89337958 89337958 A G TTC8 Missense_Mutation p.Y372C 0.22 deleterious(0) probably_damaging(0.997) TCGA-44-5644-01 14 91338301 91338301 T A RPS6KA5 3'UTR 0.29 TCGA-44-5644-01 14 94008975 94008975 C A UNC79 Missense_Mutation p.T386N 0.56 tolerated(0.31) probably_damaging(0.998) TCGA-44-5644-01 14 94120109 94120109 G T UNC79 Silent p.A1897A 0.49 TCGA-44-5644-01 14 95080781 95080781 G T SERPINA3 Translation_Start_Site p.M1? 0.21 tolerated_low_confidence(0.14) benign(0.01) TCGA-44-5644-01 14 95080977 95080977 A T SERPINA3 Nonsense_Mutation p.K67* 0.61 TCGA-44-5644-01 14 95234780 95234780 C A GSC 3'UTR 0.22 TCGA-44-5644-01 14 96707718 96707718 C T BDKRB2 Silent p.C351C 0.11 TCGA-44-5644-01 14 96875234 96875234 C T AK7 Silent p.L152L 0.41 TCGA-44-5644-01 15 20496662 20496662 G T CHEK2P2 RNA 0.17 TCGA-44-5644-01 15 24921201 24921201 A T NPAP1 Missense_Mutation p.S63C 0.22 tolerated(0.06) benign(0.027) TCGA-44-5644-01 15 24922831 24922832 - T NPAP1 Frame_Shift_Ins p.C607Lfs*30 0.29 TCGA-44-5644-01 15 24923267 24923267 G A NPAP1 Silent p.Q751Q 0.56 TCGA-44-5644-01 15 24923831 24923831 C A NPAP1 Missense_Mutation p.S939R 0.22 deleterious(0.02) possibly_damaging(0.716) TCGA-44-5644-01 15 24924112 24924112 C G NPAP1 Nonsense_Mutation p.S1033* 0.31 TCGA-44-5644-01 15 25339267 25339267 C T SNORD116-24 RNA 0.21 TCGA-44-5644-01 15 25474020 25474020 G C SNORD115-33 5'Flank 0.54 TCGA-44-5644-01 15 28515907 28515907 C A HERC2 Missense_Mutation p.M397I 0.30 benign(0.073) TCGA-44-5644-01 15 29385416 29385416 G C APBA2 Missense_Mutation p.R403P 0.10 deleterious(0.01) possibly_damaging(0.667) TCGA-44-5644-01 15 31353686 31353686 T A TRPM1 Missense_Mutation p.Q391L 0.11 tolerated(0.05) probably_damaging(0.914) TCGA-44-5644-01 15 31353687 31353687 G A TRPM1 Nonsense_Mutation p.Q391* 0.11 TCGA-44-5644-01 15 33895564 33895564 A G RYR3 Silent p.S721S 0.55 TCGA-44-5644-01 15 33895566 33895566 G T RYR3 Splice_Site p.X722_splice 0.55 TCGA-44-5644-01 15 33952583 33952583 G T RYR3 Missense_Mutation p.E1527D 0.36 benign(0.082) TCGA-44-5644-01 15 34093057 34093057 A G RYR3 Missense_Mutation p.H3306R 0.15 possibly_damaging(0.77) TCGA-44-5644-01 15 35742886 35742886 C A DPH6 Missense_Mutation p.G169C 0.25 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 15 42058484 42058484 A G MGA Missense_Mutation p.N2735S 0.12 tolerated(1) benign(0.001) TCGA-44-5644-01 15 48444431 48444431 C A MYEF2 Nonsense_Mutation p.G380* 0.48 TCGA-44-5644-01 15 48740970 48740970 C A FBN1 Missense_Mutation p.C1889F 0.56 probably_damaging(0.999) TCGA-44-5644-01 15 54305511 54305511 C A UNC13C Missense_Mutation p.S137R 0.22 tolerated_low_confidence(0.37) benign(0.149) TCGA-44-5644-01 15 58830623 58830623 G T LIPC Missense_Mutation p.Q60H 0.21 deleterious(0.03) benign(0.005) TCGA-44-5644-01 15 59499602 59499602 C A LDHAL6B Missense_Mutation p.R155S 0.59 deleterious(0.01) probably_damaging(0.998) TCGA-44-5644-01 15 63990931 63990931 G T HERC1 Missense_Mutation p.A1634E 0.12 possibly_damaging(0.526) TCGA-44-5644-01 15 65684694 65684694 C T IGDCC4 Missense_Mutation p.A634T 0.27 tolerated(1) benign(0.004) TCGA-44-5644-01 15 72958587 72958587 G T GOLGA6B Silent p.V662V 0.18 TCGA-44-5644-01 15 73996311 73996311 A T CD276 Missense_Mutation p.S349C 0.35 deleterious(0.01) possibly_damaging(0.512) TCGA-44-5644-01 15 74368284 74368284 G T GOLGA6A Missense_Mutation p.Q203K 0.10 tolerated(0.06) possibly_damaging(0.476) TCGA-44-5644-01 15 75221558 75221558 C T COX5A Missense_Mutation p.R39H 0.50 deleterious(0.04) benign(0.081) TCGA-44-5644-01 15 77046201 77046201 C A SCAPER Missense_Mutation p.R605L 0.27 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 15 77771520 77771520 G T HMG20A Splice_Site p.X303_splice 0.17 TCGA-44-5644-01 15 77906965 77906965 G C LINGO1 Missense_Mutation p.D428E 0.24 tolerated(0.47) benign(0.004) TCGA-44-5644-01 15 81240969 81240969 A G KIAA1199 Intron 0.20 TCGA-44-5644-01 15 81592382 81592382 C A IL16 Silent p.S905S 0.36 TCGA-44-5644-01 15 83932172 83932172 G C BNC1 Missense_Mutation p.R611G 0.66 tolerated(0.34) benign(0.001) TCGA-44-5644-01 15 90771572 90771572 C G SEMA4B Silent p.L737L 0.43 TCGA-44-5644-01 16 11374694 11374694 G T PRM1 3'UTR 0.67 TCGA-44-5644-01 16 14352005 14352005 C A MKL2 Silent p.L867L 0.26 TCGA-44-5644-01 16 15728691 15728691 C A KIAA0430 Missense_Mutation p.G310V 0.42 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-44-5644-01 16 17221621 17221621 C A XYLT1 Missense_Mutation p.V709L 0.44 tolerated(0.08) benign(0.403) TCGA-44-5644-01 16 19883478 19883478 C A GPRC5B Missense_Mutation p.K230N 0.48 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 16 20043242 20043242 G - GPR139 Frame_Shift_Del p.R293Afs*29 0.34 TCGA-44-5644-01 16 20348729 20348729 C A UMOD Nonsense_Mutation p.E542* 0.31 TCGA-44-5644-01 16 20448627 20448627 G A ACSM5 Missense_Mutation p.A492T 0.13 tolerated(0.09) benign(0.06) TCGA-44-5644-01 16 20952745 20952745 G T DNAH3 Missense_Mutation p.Q3878K 0.39 deleterious(0) probably_damaging(0.997) TCGA-44-5644-01 16 20981275 20981275 G A DNAH3 Missense_Mutation p.A2766V 0.22 tolerated(0.3) possibly_damaging(0.764) TCGA-44-5644-01 16 21078605 21078605 T G DNAH3 Silent p.R1173R 0.43 TCGA-44-5644-01 16 21666797 21666797 G T METTL9 3'UTR 0.57 TCGA-44-5644-01 16 21968823 21968823 G T UQCRC2 Missense_Mutation p.G68V 0.29 deleterious(0) probably_damaging(0.995) TCGA-44-5644-01 16 22144393 22144393 G A VWA3A Missense_Mutation p.R682H 0.19 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 16 2237441 2237441 G A CASKIN1 Silent p.I213I 0.44 TCGA-44-5644-01 16 22826281 22826281 C A HS3ST2 Missense_Mutation p.A117D 0.41 deleterious(0) probably_damaging(1) TCGA-44-5644-01 16 27818864 27818864 C G GSG1L Missense_Mutation p.R281T 0.48 tolerated_low_confidence(0.57) benign(0.004) TCGA-44-5644-01 16 28842109 28842109 G T ATXN2L Missense_Mutation p.G403V 0.29 deleterious(0) possibly_damaging(0.707) TCGA-44-5644-01 16 30124062 30124062 C A GDPD3 Missense_Mutation p.D79Y 0.50 deleterious(0) probably_damaging(1) TCGA-44-5644-01 16 30998017 30998017 G T HSD3B7 Missense_Mutation p.G175W 0.35 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 16 33020721 33020721 C T IGHV3OR16-8 Silent p.A43A 0.44 TCGA-44-5644-01 16 461425 461425 G C DECR2 Missense_Mutation p.K242N 0.81 tolerated(0.1) possibly_damaging(0.775) TCGA-44-5644-01 16 49671819 49671819 G T ZNF423 Missense_Mutation p.S415Y 0.35 tolerated(0.05) possibly_damaging(0.739) TCGA-44-5644-01 16 49672753 49672753 C G ZNF423 Missense_Mutation p.A104P 0.69 tolerated(0.21) benign(0.007) TCGA-44-5644-01 16 50324465 50324465 G T ADCY7 Missense_Mutation p.R90L 0.83 deleterious(0.02) benign(0.018) TCGA-44-5644-01 16 57752386 57752386 T C CCDC135 Missense_Mutation p.L402P 0.68 tolerated(0.26) benign(0.049) TCGA-44-5644-01 16 57760145 57760145 A T CCDC135 Missense_Mutation p.S642C 0.69 deleterious(0.04) possibly_damaging(0.882) TCGA-44-5644-01 16 68160513 68160513 G T NFATC3 Missense_Mutation p.K467N 0.76 deleterious(0) probably_damaging(1) TCGA-44-5644-01 16 84695417 84695417 G T KLHL36 Missense_Mutation p.R510L 0.70 tolerated(0.12) probably_damaging(0.974) TCGA-44-5644-01 16 90072808 90072808 C T DBNDD1 Missense_Mutation p.D158N 0.24 deleterious_low_confidence(0.02) benign(0.141) TCGA-44-5644-01 17 10358039 10358039 G T MYH4 Missense_Mutation p.P842T 0.50 deleterious(0) probably_damaging(0.998) TCGA-44-5644-01 17 10428089 10428089 G C MYH2 Silent p.T1652T 0.47 TCGA-44-5644-01 17 10432175 10432175 T A MYH2 Missense_Mutation p.E1192D 0.61 deleterious(0.02) benign(0.107) TCGA-44-5644-01 17 10446192 10446192 C G MYH2 Missense_Mutation p.E302Q 0.80 deleterious(0) possibly_damaging(0.47) TCGA-44-5644-01 17 18023703 18023703 C G MYO15A Missense_Mutation p.P530R 0.65 possibly_damaging(0.804) TCGA-44-5644-01 17 18024001 18024001 G A MYO15A Silent p.R629R 0.92 TCGA-44-5644-01 17 1840431 1840431 A G RTN4RL1 Missense_Mutation p.F229L 0.22 deleterious(0) probably_damaging(0.998) TCGA-44-5644-01 17 18855485 18855485 C G SLC5A10 5'UTR 0.82 TCGA-44-5644-01 17 19827722 19827722 C T AKAP10 Missense_Mutation p.G584R 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-44-5644-01 17 2091784 2091785 AG - SMG6 Frame_Shift_Del p.S965Cfs*26 0.41 TCGA-44-5644-01 17 2381013 2381013 C T METTL16 Missense_Mutation p.D99N 0.26 tolerated(0.18) benign(0.11) TCGA-44-5644-01 17 27065225 27065225 A T NEK8 Missense_Mutation p.H395L 0.31 tolerated(0.08) benign(0.215) TCGA-44-5644-01 17 27308831 27308831 G A SEZ6 Silent p.F94F 0.38 TCGA-44-5644-01 17 27935961 27935961 G C ANKRD13B Missense_Mutation p.D172H 0.33 deleterious(0) probably_damaging(0.937) TCGA-44-5644-01 17 28758816 28758816 G C CPD Missense_Mutation p.D682H 0.18 deleterious(0.01) probably_damaging(1) TCGA-44-5644-01 17 29548883 29548883 C T NF1 Missense_Mutation p.H553Y 0.80 deleterious(0) possibly_damaging(0.885) TCGA-44-5644-01 17 31618776 31618776 C T ASIC2 Missense_Mutation p.V120M 0.23 deleterious(0.04) benign(0.281) TCGA-44-5644-01 17 32953473 32953473 G T TMEM132E Missense_Mutation p.R132L 0.38 tolerated(0.07) benign(0.172) TCGA-44-5644-01 17 3324735 3324735 C A OR3A3 Missense_Mutation p.P292T 0.88 deleterious(0) probably_damaging(0.989) TCGA-44-5644-01 17 34325410 34325410 C T CCL15 Missense_Mutation p.D52N 0.23 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 17 39551865 39551865 G T KRT31 Missense_Mutation p.T200N 0.71 tolerated(0.1) benign(0.349) TCGA-44-5644-01 17 40265767 40265767 C T KAT2A Missense_Mutation p.R805H 0.38 deleterious(0) probably_damaging(0.993) TCGA-44-5644-01 17 42455818 42455818 G C ITGA2B Missense_Mutation p.A669G 0.44 tolerated(0.08) benign(0.41) TCGA-44-5644-01 17 42854956 42854956 G T ADAM11 Nonsense_Mutation p.E630* 0.73 TCGA-44-5644-01 17 4594689 4594689 T A PELP1 Missense_Mutation p.S100C 0.84 probably_damaging(0.962) TCGA-44-5644-01 17 46799746 46799746 G T PRAC1 Nonsense_Mutation p.C3* 0.63 TCGA-44-5644-01 17 47295236 47295236 C A ABI3 Missense_Mutation p.L141I 0.79 tolerated(0.94) possibly_damaging(0.487) TCGA-44-5644-01 17 47788741 47788741 C T FAM117A Missense_Mutation p.S413N 0.38 deleterious_low_confidence(0.04) possibly_damaging(0.479) TCGA-44-5644-01 17 51901177 51901177 C T KIF2B Silent p.N261N 0.16 TCGA-44-5644-01 17 55183864 55183864 G C AKAP1 Missense_Mutation p.A347P 0.53 deleterious(0.01) probably_damaging(0.955) TCGA-44-5644-01 17 56276975 56276975 G T EPX Missense_Mutation p.G453W 0.53 deleterious(0) probably_damaging(0.964) TCGA-44-5644-01 17 56386583 56386583 T A BZRAP1 Silent p.A1350A 0.33 TCGA-44-5644-01 17 57057409 57057409 T C PPM1E Missense_Mutation p.Y429H 0.32 deleterious(0) probably_damaging(0.998) TCGA-44-5644-01 17 58366009 58366009 C A USP32 Missense_Mutation p.W149L 0.24 deleterious(0) probably_damaging(0.953) TCGA-44-5644-01 17 60349834 60349834 T A TBC1D3P2 Intron 0.51 TCGA-44-5644-01 17 62018078 62018078 G T SCN4A 3'UTR 0.25 TCGA-44-5644-01 17 62049987 62049987 G - SCN4A Frame_Shift_Del p.P72Rfs*43 0.42 TCGA-44-5644-01 17 62865265 62865265 G A LRRC37A3 Silent p.L976L 0.20 TCGA-44-5644-01 17 65021095 65021095 G T CACNG4 Missense_Mutation p.G142C 0.29 deleterious(0) probably_damaging(1) TCGA-44-5644-01 17 66267011 66267011 G T SLC16A6 Missense_Mutation p.S430R 0.24 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 17 68171798 68171798 C A KCNJ2 Silent p.G206G 0.25 TCGA-44-5644-01 17 6931082 6931082 G T BCL6B 3'UTR 0.40 TCGA-44-5644-01 17 72350441 72350441 G A KIF19 Missense_Mutation p.E817K 0.56 tolerated(0.07) benign(0.003) TCGA-44-5644-01 17 72927022 72927022 G T OTOP2 Missense_Mutation p.G431V 0.24 tolerated(0.32) benign(0.002) TCGA-44-5644-01 17 7579361 7579361 A C TP53 Missense_Mutation p.F109C 0.80 deleterious(0) probably_damaging(1) TCGA-44-5644-01 17 77077075 77077075 A T ENGASE Silent p.P264P 0.29 TCGA-44-5644-01 17 77077076 77077076 G T ENGASE Missense_Mutation p.G265W 0.29 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 17 77757746 77757746 C T CBX2 Silent p.P168P 0.27 TCGA-44-5644-01 17 80282697 80282697 C A SECTM1 Missense_Mutation p.C55F 0.23 deleterious(0) probably_damaging(0.955) TCGA-44-5644-01 17 9676190 9676190 G T DHRS7C Silent p.A208A 0.83 TCGA-44-5644-01 17 9683332 9683332 G C DHRS7C Silent p.V97V 0.88 TCGA-44-5644-01 18 14533109 14533109 G T POTEC Missense_Mutation p.L336I 0.24 tolerated(0.8) possibly_damaging(0.744) TCGA-44-5644-01 18 28587018 28587018 A T DSC3 Nonsense_Mutation p.Y581* 0.39 TCGA-44-5644-01 18 28736079 28736079 T C DSC1 Missense_Mutation p.K133R 0.31 deleterious(0.01) benign(0.113) TCGA-44-5644-01 18 29116302 29116302 G T DSG2 Missense_Mutation p.D521Y 0.47 deleterious(0) probably_damaging(1) TCGA-44-5644-01 18 31319459 31319459 C A ASXL3 Missense_Mutation p.N697K 0.55 benign(0.146) TCGA-44-5644-01 18 31463354 31463354 G T NOL4 Missense_Mutation p.P526Q 0.45 tolerated(0.46) benign(0.003) TCGA-44-5644-01 18 34298168 34298168 G T FHOD3 Silent p.P794P 0.30 TCGA-44-5644-01 18 3534215 3534215 C A DLGAP1 Missense_Mutation p.R819L 0.51 deleterious(0.01) benign(0.133) TCGA-44-5644-01 18 40850516 40850516 C A SYT4 Missense_Mutation p.E356D 0.48 deleterious(0) possibly_damaging(0.907) TCGA-44-5644-01 18 42531132 42531132 C G SETBP1 Silent p.P609P 0.42 TCGA-44-5644-01 18 42531800 42531800 C T SETBP1 Missense_Mutation p.P832L 0.36 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 18 43319536 43319536 C G SLC14A1 Silent p.L341L 0.42 TCGA-44-5644-01 18 43464770 43464770 T A EPG5 Missense_Mutation p.I1706F 0.55 deleterious(0) benign(0.208) TCGA-44-5644-01 18 44030685 44030685 G T RNF165 Missense_Mutation p.D247Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 18 47788483 47788483 C A CCDC11 Missense_Mutation p.R59L 0.39 deleterious(0.02) benign(0.198) TCGA-44-5644-01 18 59203799 59203799 G T CDH20 Missense_Mutation p.A449S 0.51 tolerated(0.54) benign(0.016) TCGA-44-5644-01 18 59203832 59203832 C A CDH20 Missense_Mutation p.H460N 0.12 deleterious(0) benign(0.304) TCGA-44-5644-01 18 59483374 59483374 T A RNF152 Missense_Mutation p.K108M 0.53 tolerated(0.09) possibly_damaging(0.707) TCGA-44-5644-01 18 60612425 60612425 G A PHLPP1 Missense_Mutation p.C1082Y 0.74 deleterious(0) probably_damaging(1) TCGA-44-5644-01 18 61233928 61233928 G T SERPINB12 Missense_Mutation p.R301L 0.79 deleterious(0.01) possibly_damaging(0.5) TCGA-44-5644-01 18 61564427 61564427 G T SERPINB2 Missense_Mutation p.G131C 0.78 deleterious(0.01) probably_damaging(0.999) TCGA-44-5644-01 18 63525089 63525089 T A CDH7 Missense_Mutation p.F425I 0.33 deleterious(0) probably_damaging(0.973) TCGA-44-5644-01 18 64218475 64218475 T A CDH19 Nonsense_Mutation p.K211* 0.55 TCGA-44-5644-01 18 65181399 65181399 C T DSEL Missense_Mutation p.M159I 0.20 deleterious(0) possibly_damaging(0.855) TCGA-44-5644-01 18 66506000 66506000 G T CCDC102B Missense_Mutation p.D222Y 0.40 deleterious(0.01) possibly_damaging(0.898) TCGA-44-5644-01 18 73139420 73139420 C - SMIM21 Frame_Shift_Del p.N34Ifs*28 0.37 TCGA-44-5644-01 18 76754795 76754795 C A SALL3 Missense_Mutation p.T935N 0.89 tolerated(0.17) possibly_damaging(0.877) TCGA-44-5644-01 18 8253261 8253261 T A PTPRM Missense_Mutation p.L868Q 0.39 deleterious(0) possibly_damaging(0.906) TCGA-44-5644-01 19 10221814 10221814 G T PPAN Intron 0.82 TCGA-44-5644-01 19 10444188 10444188 G A RAVER1 Missense_Mutation p.P16L 0.83 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-44-5644-01 19 12297713 12297713 G A ZNF136 Missense_Mutation p.G174R 0.25 deleterious(0) possibly_damaging(0.791) TCGA-44-5644-01 19 12298427 12298427 A T ZNF136 Nonsense_Mutation p.R412* 0.65 TCGA-44-5644-01 19 14952192 14952192 C A OR7A10 Silent p.L166L 0.71 TCGA-44-5644-01 19 16641581 16641581 C A CHERP Missense_Mutation p.R262L 0.72 deleterious(0) probably_damaging(0.964) TCGA-44-5644-01 19 18779735 18779735 A G KLHL26 Missense_Mutation p.I510V 0.89 tolerated(0.18) benign(0.001) TCGA-44-5644-01 19 19745413 19745413 G A GMIP Missense_Mutation p.P663S 0.74 tolerated(0.23) benign(0.11) TCGA-44-5644-01 19 19932513 19932513 G C ZNF506 5'UTR 0.29 TCGA-44-5644-01 19 23159821 23159821 A T ZNF728 Nonsense_Mutation p.C106* 0.47 TCGA-44-5644-01 19 23405738 23405738 G C ZNF724P Missense_Mutation p.L437V 0.23 deleterious(0) probably_damaging(0.983) TCGA-44-5644-01 19 23414142 23414142 T A ZNF724P Missense_Mutation p.D51V 0.16 deleterious(0) probably_damaging(0.937) TCGA-44-5644-01 19 23543273 23543273 C A ZNF91 Missense_Mutation p.K836N 0.33 tolerated(0.62) probably_damaging(0.932) TCGA-44-5644-01 19 24310838 24310838 C G ZNF254 3'UTR 0.30 TCGA-44-5644-01 19 30199321 30199321 C A C19orf12 Silent p.T11T 0.42 TCGA-44-5644-01 19 31767539 31767539 G T TSHZ3 Missense_Mutation p.H1054N 0.41 deleterious(0) probably_damaging(0.998) TCGA-44-5644-01 19 34983977 34983977 G T WTIP Missense_Mutation p.G269C 0.46 deleterious(0.03) probably_damaging(0.99) TCGA-44-5644-01 19 35993771 35993771 G - DMKN Frame_Shift_Del p.S385Afs*89 0.18 TCGA-44-5644-01 19 36053455 36053455 A T ATP4A Missense_Mutation p.V101D 0.46 deleterious(0) probably_damaging(0.921) TCGA-44-5644-01 19 36322587 36322587 C A NPHS1 Missense_Mutation p.G1082W 0.41 tolerated(0.08) benign(0.099) TCGA-44-5644-01 19 38572906 38572906 G T SIPA1L3 Missense_Mutation p.G234V 0.20 tolerated(0.07) benign(0.06) TCGA-44-5644-01 19 41179275 41179275 C T NUMBL Missense_Mutation p.R337H 0.42 deleterious(0) probably_damaging(0.944) TCGA-44-5644-01 19 4219734 4219734 G T ANKRD24 Missense_Mutation p.K1050N 0.77 tolerated(0.13) benign(0.143) TCGA-44-5644-01 19 42558061 42558061 G T GRIK5 Silent p.T359T 0.81 TCGA-44-5644-01 19 42821921 42821921 G T TMEM145 Nonsense_Mutation p.G321* 0.73 TCGA-44-5644-01 19 42860570 42860570 G T MEGF8 Silent p.L1462L 0.90 TCGA-44-5644-01 19 43702373 43702373 A G PSG4 Missense_Mutation p.M162T 0.71 tolerated(0.69) benign(0.021) TCGA-44-5644-01 19 43979578 43979578 T C PHLDB3 Missense_Mutation p.E636G 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-44-5644-01 19 51628390 51628390 T G SIGLEC9 Silent p.P53P 0.91 TCGA-44-5644-01 19 51871867 51871867 G T CLDND2 5'UTR 0.78 TCGA-44-5644-01 19 52376759 52376759 C A ZNF577 Missense_Mutation p.V162L 0.81 tolerated(0.17) benign(0.072) TCGA-44-5644-01 19 55143411 55143411 A T LILRB1 Silent p.S128S 0.78 TCGA-44-5644-01 19 55399576 55399576 A T FCAR Silent p.S188S 0.65 TCGA-44-5644-01 19 55666188 55666188 C G TNNI3 Missense_Mutation p.R98P 0.69 deleterious(0) probably_damaging(0.939) TCGA-44-5644-01 19 56223834 56223834 T G NLRP9 Missense_Mutation p.Q875P 0.80 tolerated(0.06) possibly_damaging(0.88) TCGA-44-5644-01 19 57883153 57883153 C A ZNF547 Missense_Mutation p.H10N 0.75 tolerated(0.31) benign(0.008) TCGA-44-5644-01 19 9082643 9082643 C A MUC16 Missense_Mutation p.G3058W 0.51 unknown(0) TCGA-44-5644-01 19 9084550 9084550 G T MUC16 Missense_Mutation p.T2422K 0.62 unknown(0) TCGA-44-5644-01 19 9088131 9088131 T A MUC16 Silent p.S1228S 0.71 TCGA-44-5644-01 19 9088849 9088849 G T MUC16 Missense_Mutation p.A989D 0.39 unknown(0) TCGA-44-5644-01 1 101186080 101186080 A T VCAM1 Missense_Mutation p.Q38L 0.70 deleterious(0) possibly_damaging(0.904) TCGA-44-5644-01 1 109737089 109737089 C G KIAA1324 Missense_Mutation p.P665R 0.69 tolerated(0.41) benign(0.003) TCGA-44-5644-01 1 1147325 1147325 C A TNFRSF4 Missense_Mutation p.G211W 0.71 deleterious(0.02) possibly_damaging(0.825) TCGA-44-5644-01 1 1149499 1149499 C A TNFRSF4 Silent p.V3V 0.67 TCGA-44-5644-01 1 11854864 11854864 C T MTHFR Missense_Mutation p.R363H 0.34 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 1 12144554 12144554 C A TNFRSF8 Missense_Mutation p.P33T 0.14 deleterious(0.01) possibly_damaging(0.828) TCGA-44-5644-01 1 1249313 1249313 C T CPSF3L Intron 0.22 TCGA-44-5644-01 1 12885036 12885036 G T PRAMEF11 Missense_Mutation p.L359M 0.23 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 1 12939712 12939712 T C PRAMEF4 Missense_Mutation p.I364V 0.30 deleterious(0.04) probably_damaging(0.978) TCGA-44-5644-01 1 12979699 12979699 C G PRAMEF7 Silent p.V297V 0.25 TCGA-44-5644-01 1 144866593 144866593 C T PDE4DIP Silent p.R1883R 0.15 TCGA-44-5644-01 1 145507688 145507688 C T RBM8A Missense_Mutation p.H8Y 0.54 tolerated(0.28) benign(0.004) TCGA-44-5644-01 1 147090787 147090787 C T BCL9 Missense_Mutation p.R276W 0.19 deleterious(0) benign(0.131) TCGA-44-5644-01 1 152280877 152280877 C G FLG Missense_Mutation p.G2162A 0.39 possibly_damaging(0.794) TCGA-44-5644-01 1 154209593 154209593 T G UBAP2L Missense_Mutation p.F228L 0.33 tolerated(0.65) unknown(0) TCGA-44-5644-01 1 155019788 155019788 C A DCST1 Missense_Mutation p.P538T 0.39 tolerated(0.09) benign(0.237) TCGA-44-5644-01 1 156146585 156146585 C T SEMA4A Missense_Mutation p.L695F 0.25 tolerated(0.07) benign(0.093) TCGA-44-5644-01 1 156640063 156640063 C A NES Missense_Mutation p.R1306M 0.28 deleterious(0.02) possibly_damaging(0.784) TCGA-44-5644-01 1 157062832 157062832 A T ETV3L Missense_Mutation p.F232Y 0.70 tolerated(0.06) benign(0.069) TCGA-44-5644-01 1 157494195 157494195 C T FCRL5 Missense_Mutation p.A705T 0.50 tolerated(0.13) probably_damaging(0.98) TCGA-44-5644-01 1 158063180 158063180 T A KIRREL Missense_Mutation p.L508Q 0.27 deleterious(0.01) possibly_damaging(0.855) TCGA-44-5644-01 1 158227519 158227519 G T CD1A 3'UTR 0.36 TCGA-44-5644-01 1 158516949 158516949 C A OR6Y1 Missense_Mutation p.G316V 0.38 tolerated(0.55) benign(0.001) TCGA-44-5644-01 1 158607982 158607982 C A SPTA1 Missense_Mutation p.G1677V 0.53 deleterious(0.03) possibly_damaging(0.489) TCGA-44-5644-01 1 158725560 158725560 C T OR6K6 Silent p.L319L 0.27 TCGA-44-5644-01 1 158735734 158735734 C G OR6N1 Missense_Mutation p.V247L 0.54 deleterious(0) probably_damaging(0.919) TCGA-44-5644-01 1 158747146 158747146 A T OR6N2 Missense_Mutation p.F94I 0.28 tolerated(0.08) possibly_damaging(0.824) TCGA-44-5644-01 1 159163275 159163275 A T CADM3 Missense_Mutation p.T183S 0.53 tolerated(0.17) benign(0.008) TCGA-44-5644-01 1 159166236 159166236 C A CADM3 Silent p.G292G 0.65 TCGA-44-5644-01 1 159166837 159166837 C A CADM3 Silent p.T347T 0.52 TCGA-44-5644-01 1 159752065 159752065 C A DUSP23 Silent p.P130P 0.27 TCGA-44-5644-01 1 160281721 160281721 T C COPA Missense_Mutation p.D338G 0.18 deleterious(0.03) benign(0.044) TCGA-44-5644-01 1 161654835 161654835 C G RPL31P11 RNA 0.50 TCGA-44-5644-01 1 161654836 161654836 C A RPL31P11 RNA 0.53 TCGA-44-5644-01 1 161683178 161683178 C A FCRLA 3'UTR 0.31 TCGA-44-5644-01 1 161954923 161954923 C T OLFML2B Intron 0.36 TCGA-44-5644-01 1 162372571 162372571 T G SH2D1B Silent p.T52T 0.16 TCGA-44-5644-01 1 16385088 16385088 G C FAM131C Missense_Mutation p.S229R 0.19 tolerated(0.54) benign(0.081) TCGA-44-5644-01 1 165175199 165175199 T A LMX1A Missense_Mutation p.Q297L 0.53 deleterious(0) possibly_damaging(0.52) TCGA-44-5644-01 1 165175220 165175220 T A LMX1A Missense_Mutation p.Y290F 0.49 tolerated(0.15) benign(0.012) TCGA-44-5644-01 1 166904587 166904587 C A ILDR2 Silent p.P277P 0.44 TCGA-44-5644-01 1 168282075 168282075 G T TBX19 Silent p.V394V 0.18 TCGA-44-5644-01 1 170695468 170695468 G T PRRX1 Silent p.V175V 0.33 TCGA-44-5644-01 1 171249944 171249944 G C FMO1 Missense_Mutation p.G216A 0.24 tolerated(0.13) benign(0.257) TCGA-44-5644-01 1 171621499 171621499 G T MYOC Missense_Mutation p.L85M 0.28 tolerated(0.24) possibly_damaging(0.685) TCGA-44-5644-01 1 171679938 171679938 C A VAMP4 Missense_Mutation p.D61Y 0.22 deleterious(0) probably_damaging(0.969) TCGA-44-5644-01 1 17323579 17323579 C A ATP13A2 Silent p.G377G 0.65 TCGA-44-5644-01 1 175067700 175067700 G A TNN Silent p.E696E 0.14 TCGA-44-5644-01 1 17531764 17531764 G T PADI1 Missense_Mutation p.V18L 0.76 tolerated(0.22) possibly_damaging(0.557) TCGA-44-5644-01 1 175348736 175348736 C A TNR Missense_Mutation p.V639L 0.30 tolerated(0.64) benign(0.001) TCGA-44-5644-01 1 17552534 17552534 A G PADI1 Missense_Mutation p.Q178R 0.27 tolerated(0.17) possibly_damaging(0.527) TCGA-44-5644-01 1 17603297 17603297 G T PADI3 Missense_Mutation p.G494V 0.15 tolerated(0.08) benign(0.027) TCGA-44-5644-01 1 176903309 176903309 C A ASTN1 Nonsense_Mutation p.E884* 0.59 TCGA-44-5644-01 1 176905413 176905413 G C ASTN1 Missense_Mutation p.A824G 0.17 deleterious(0) benign(0.049) TCGA-44-5644-01 1 177030276 177030276 T A ASTN1 Missense_Mutation p.T137S 0.55 tolerated_low_confidence(0.1) probably_damaging(0.991) TCGA-44-5644-01 1 178427494 178427494 G C RASAL2 Missense_Mutation p.A1023P 0.53 tolerated(0.22) probably_damaging(0.917) TCGA-44-5644-01 1 179095711 179095711 G T ABL2 Missense_Mutation p.T163N 0.27 deleterious(0) probably_damaging(0.987) TCGA-44-5644-01 1 179523669 179523669 G A NPHS2 Intron 0.56 TCGA-44-5644-01 1 179982980 179982980 A C CEP350 Splice_Site p.X465_splice 0.13 TCGA-44-5644-01 1 179982981 179982981 G C CEP350 Splice_Site p.X465_splice 0.13 TCGA-44-5644-01 1 180006120 180006120 C G CEP350 Missense_Mutation p.L1336V 0.33 probably_damaging(0.998) TCGA-44-5644-01 1 180062310 180062310 A G CEP350 Missense_Mutation p.K2357R 0.63 benign(0.002) TCGA-44-5644-01 1 181620493 181620493 C A CACNA1E Missense_Mutation p.A324D 0.22 deleterious(0.02) possibly_damaging(0.887) TCGA-44-5644-01 1 181765968 181765968 G T CACNA1E Missense_Mutation p.G2125C 0.27 deleterious(0) probably_damaging(0.996) TCGA-44-5644-01 1 181767574 181767574 C T CACNA1E Silent p.I2182I 0.51 TCGA-44-5644-01 1 182845284 182845284 G T DHX9 Missense_Mutation p.A639S 0.27 tolerated(0.21) benign(0.026) TCGA-44-5644-01 1 186064396 186064396 C A HMCN1 Nonsense_Mutation p.S3439* 0.44 TCGA-44-5644-01 1 186120336 186120336 G T HMCN1 Silent p.G4871G 0.25 TCGA-44-5644-01 1 186316585 186316586 GC A TPR Frame_Shift_Del p.Q927Hfs*12 0.23 TCGA-44-5644-01 1 190203589 190203589 C T BRINP3 Missense_Mutation p.G213S 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-44-5644-01 1 19166519 19166519 C A TAS1R2 Silent p.L698L 0.16 TCGA-44-5644-01 1 192779316 192779316 G T RGS2 Missense_Mutation p.R44L 0.40 deleterious(0) possibly_damaging(0.645) TCGA-44-5644-01 1 196227502 196227502 C A KCNT2 Silent p.R1011R 0.34 TCGA-44-5644-01 1 196643001 196643001 C G CFH Missense_Mutation p.H87D 0.15 deleterious(0.01) benign(0.308) TCGA-44-5644-01 1 196884257 196884257 C A CFHR4 Missense_Mutation p.P509Q 0.31 deleterious(0) probably_damaging(0.928) TCGA-44-5644-01 1 197026446 197026446 C T F13B Missense_Mutation p.G319R 0.23 deleterious(0) probably_damaging(1) TCGA-44-5644-01 1 197029495 197029495 C A F13B Splice_Site p.X269_splice 0.43 TCGA-44-5644-01 1 197104364 197104364 T C ASPM Missense_Mutation p.R679G 0.28 deleterious(0) probably_damaging(0.938) TCGA-44-5644-01 1 197390502 197390502 A T CRB1 Missense_Mutation p.Q515L 0.40 deleterious(0.05) benign(0.042) TCGA-44-5644-01 1 198703512 198703512 C A PTPRC Silent p.A745A 0.39 TCGA-44-5644-01 1 201382239 201382239 C T TNNI1 Missense_Mutation p.R67Q 0.21 tolerated(0.15) benign(0.045) TCGA-44-5644-01 1 203192738 203192738 G T CHIT1 Nonsense_Mutation p.S122* 0.21 TCGA-44-5644-01 1 207651379 207651379 C A CR2 Missense_Mutation p.H1018N 0.50 tolerated(0.84) benign(0.007) TCGA-44-5644-01 1 21014335 21014335 A T KIF17 Missense_Mutation p.V495E 0.19 tolerated_low_confidence(0.09) benign(0.055) TCGA-44-5644-01 1 211192569 211192569 G T KCNH1 Silent p.P196P 0.57 TCGA-44-5644-01 1 211652627 211652627 C A RD3 Missense_Mutation p.E113D 0.33 deleterious(0.03) benign(0.356) TCGA-44-5644-01 1 21220009 21220009 C A EIF4G3 Splice_Site p.X701_splice 0.68 TCGA-44-5644-01 1 214171498 214171498 A G PROX1 Silent p.P540P 0.31 TCGA-44-5644-01 1 214546179 214546179 C A PTPN14 Missense_Mutation p.V971L 0.60 tolerated(0.07) benign(0.001) TCGA-44-5644-01 1 215853675 215853675 G T USH2A Missense_Mutation p.T4037K 0.35 probably_damaging(0.951) TCGA-44-5644-01 1 216019345 216019345 T G USH2A Missense_Mutation p.Y2959S 0.70 benign(0.039) TCGA-44-5644-01 1 216172274 216172274 C A USH2A Missense_Mutation p.M2204I 0.31 benign(0.002) TCGA-44-5644-01 1 220151953 220151953 G A EPRS Missense_Mutation p.R1340C 0.58 deleterious(0) probably_damaging(0.996) TCGA-44-5644-01 1 222712052 222712052 G A HHIPL2 Silent p.V505V 0.52 TCGA-44-5644-01 1 223985993 223985993 C G TP53BP2 Silent p.A624A 0.71 TCGA-44-5644-01 1 22987436 22987436 C A C1QB Missense_Mutation p.P107T 0.21 tolerated(0.1) possibly_damaging(0.505) TCGA-44-5644-01 1 231406610 231406610 G C GNPAT Silent p.S462S 0.76 TCGA-44-5644-01 1 231472716 231472716 C A EXOC8 Missense_Mutation p.S259I 0.74 deleterious(0.02) possibly_damaging(0.536) TCGA-44-5644-01 1 23688458 23688458 C A ZNF436 3'UTR 0.16 TCGA-44-5644-01 1 238050169 238050169 C A ZP4 Splice_Site p.X248_splice 0.75 TCGA-44-5644-01 1 241797805 241797805 T C CHML Missense_Mutation p.I422V 0.80 tolerated(0.29) benign(0.048) TCGA-44-5644-01 1 2435900 2435900 C G PLCH2 3'UTR 0.30 TCGA-44-5644-01 1 246890200 246890200 C A SCCPDH Missense_Mutation p.P66Q 0.18 tolerated(0.19) benign(0.035) TCGA-44-5644-01 1 247654765 247654765 C G OR2W5 RNA 0.31 TCGA-44-5644-01 1 248004346 248004346 G C OR11L1 Missense_Mutation p.L285V 0.53 tolerated(0.52) possibly_damaging(0.655) TCGA-44-5644-01 1 248059389 248059389 C A OR2W3 Silent p.P167P 0.24 TCGA-44-5644-01 1 248202514 248202514 C A OR2L2 3'UTR 0.20 TCGA-44-5644-01 1 248202540 248202540 G C OR2L2 3'UTR 0.20 TCGA-44-5644-01 1 248616864 248616864 G T OR2T2 Missense_Mutation p.A256S 0.43 tolerated(0.08) probably_damaging(0.998) TCGA-44-5644-01 1 248685360 248685360 C A OR2G6 Missense_Mutation p.P138H 0.44 tolerated(0.05) benign(0.112) TCGA-44-5644-01 1 248737347 248737347 C A OR2T34 Missense_Mutation p.G238C 0.60 deleterious(0) probably_damaging(0.997) TCGA-44-5644-01 1 248756850 248756850 T C OR2T10 Missense_Mutation p.I74V 0.31 tolerated(0.19) benign(0.05) TCGA-44-5644-01 1 26664907 26664907 A T AIM1L Missense_Mutation p.Y262N 0.29 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 1 28816360 28816360 A G PHACTR4 Intron 0.31 TCGA-44-5644-01 1 32267264 32267264 C T SPOCD1 Splice_Site p.X475_splice 0.16 TCGA-44-5644-01 1 33992820 33992820 C T CSMD2 Missense_Mutation p.E3260K 0.25 tolerated(0.52) benign(0.001) TCGA-44-5644-01 1 34192228 34192228 A T CSMD2 Silent p.P769P 0.57 TCGA-44-5644-01 1 3668988 3668988 C A CCDC27 5'UTR 0.53 TCGA-44-5644-01 1 3669272 3669272 G T CCDC27 Missense_Mutation p.R76L 0.23 deleterious(0) possibly_damaging(0.858) TCGA-44-5644-01 1 3669273 3669273 G T CCDC27 Silent p.R76R 0.25 TCGA-44-5644-01 1 38397621 38397621 G T INPP5B Missense_Mutation p.L166I 0.32 tolerated(0.21) benign(0.029) TCGA-44-5644-01 1 40236278 40236278 C A OXCT2 Missense_Mutation p.R217L 0.66 tolerated(0.08) benign(0.006) TCGA-44-5644-01 1 43241011 43241011 G T C1orf50 Missense_Mutation p.Q182H 0.81 tolerated(0.09) benign(0.079) TCGA-44-5644-01 1 43392632 43392632 G C SLC2A1 3'UTR 0.84 TCGA-44-5644-01 1 43886870 43886870 G T SZT2 Missense_Mutation p.A508S 0.89 deleterious(0.02) probably_damaging(0.922) TCGA-44-5644-01 1 44086827 44086827 G T PTPRF Missense_Mutation p.R1860L 0.90 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 1 44584645 44584645 G C KLF17 Silent p.A22A 0.48 TCGA-44-5644-01 1 45292949 45292949 A T PTCH2 Missense_Mutation p.S802T 0.54 tolerated(0.65) benign(0.002) TCGA-44-5644-01 1 55119634 55119634 C A MROH7 Missense_Mutation p.F345L 0.30 tolerated_low_confidence(0.3) benign(0.097) TCGA-44-5644-01 1 55512290 55512290 G T PCSK9 Missense_Mutation p.R165L 0.44 tolerated(0.19) benign(0.003) TCGA-44-5644-01 1 57159456 57159456 C T PRKAA2 Missense_Mutation p.S165L 0.37 tolerated(0.54) possibly_damaging(0.502) TCGA-44-5644-01 1 64644039 64644039 C A ROR1 Missense_Mutation p.S772Y 0.36 deleterious(0.02) probably_damaging(0.973) TCGA-44-5644-01 1 66999952 66999952 G T SGIP1 5'Flank 0.43 TCGA-44-5644-01 1 67205120 67205120 G T SGIP1 Missense_Mutation p.D712Y 0.39 deleterious(0) possibly_damaging(0.53) TCGA-44-5644-01 1 70728531 70728531 C A ANKRD13C Splice_Site p.X499_splice 0.42 TCGA-44-5644-01 1 76262883 76262883 C T MSH4 Silent p.P71P 0.36 TCGA-44-5644-01 1 77806060 77806060 A T AK5 Splice_Site p.X234_splice 0.37 TCGA-44-5644-01 1 78481780 78481780 G T DNAJB4 Missense_Mutation p.G288V 0.42 deleterious(0.01) possibly_damaging(0.69) TCGA-44-5644-01 1 86308023 86308023 C T COL24A1 Silent p.R1172R 0.31 TCGA-44-5644-01 1 86900349 86900349 C T CLCA2 Missense_Mutation p.P298L 0.39 deleterious(0.03) possibly_damaging(0.743) TCGA-44-5644-01 1 8927283 8927283 C A ENO1 Missense_Mutation p.G113W 0.54 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-5644-01 1 981235 981235 G T AGRN Missense_Mutation p.G887C 0.57 deleterious(0) probably_damaging(0.991) TCGA-44-5644-01 20 11903919 11903919 G C BTBD3 Missense_Mutation p.G392R 0.32 deleterious(0) possibly_damaging(0.838) TCGA-44-5644-01 20 1458023 1458023 T A SIRPB2 Silent p.A273A 0.40 TCGA-44-5644-01 20 1592250 1592250 C A SIRPB1 Intron 0.32 TCGA-44-5644-01 20 20232362 20232362 C G C20orf26 Missense_Mutation p.I761M 0.43 tolerated(0.08) possibly_damaging(0.609) TCGA-44-5644-01 20 21689880 21689880 C G PAX1 Silent p.A360A 0.34 TCGA-44-5644-01 20 35540893 35540893 T C SAMHD1 Silent p.Q375Q 0.29 TCGA-44-5644-01 20 36869448 36869448 G T KIAA1755 Missense_Mutation p.T362N 0.51 tolerated(0.3) benign(0.154) TCGA-44-5644-01 20 3729935 3729935 G T HSPA12B Missense_Mutation p.V303L 0.15 tolerated(0.28) benign(0.067) TCGA-44-5644-01 20 37546873 37546873 C A PPP1R16B Missense_Mutation p.P423H 0.23 tolerated(0.15) benign(0.401) TCGA-44-5644-01 20 39833104 39833104 C T ZHX3 Silent p.V151V 0.30 TCGA-44-5644-01 20 40076594 40076594 C A CHD6 Missense_Mutation p.R1234L 0.56 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 20 4228916 4228916 C A ADRA1D Missense_Mutation p.G230V 0.31 deleterious(0) possibly_damaging(0.809) TCGA-44-5644-01 20 42979383 42979383 G A R3HDML Missense_Mutation p.S238N 0.29 tolerated(1) benign(0) TCGA-44-5644-01 20 43629116 43629116 G C STK4 Missense_Mutation p.Q305H 0.14 tolerated(0.22) benign(0.008) TCGA-44-5644-01 20 43932928 43932928 G C MATN4 Missense_Mutation p.L195V 0.22 benign(0.046) TCGA-44-5644-01 20 44676202 44676202 G T SLC12A5 Nonsense_Mutation p.E656* 0.30 TCGA-44-5644-01 20 45355581 45355581 G T SLC2A10 Missense_Mutation p.W456L 0.65 deleterious(0) probably_damaging(0.995) TCGA-44-5644-01 20 4679880 4679880 G C PRNP Missense_Mutation p.G5A 0.34 tolerated(0.06) benign(0.075) TCGA-44-5644-01 20 4768348 4768348 C T RASSF2 Silent p.Q248Q 0.48 TCGA-44-5644-01 20 4768349 4768349 T G RASSF2 Missense_Mutation p.Q248P 0.46 deleterious(0) probably_damaging(0.986) TCGA-44-5644-01 20 48491357 48491357 T A SLC9A8 Nonsense_Mutation p.C374* 0.18 TCGA-44-5644-01 20 4913315 4913315 C A SLC23A2 5'UTR 0.36 TCGA-44-5644-01 20 49620679 49620679 C T KCNG1 Missense_Mutation p.R480Q 0.25 tolerated(0.13) benign(0.029) TCGA-44-5644-01 20 55025690 55025690 C A CASS4 Silent p.A199A 0.32 TCGA-44-5644-01 20 56139388 56139388 G T PCK1 Missense_Mutation p.E375D 0.46 tolerated(0.39) benign(0) TCGA-44-5644-01 20 57597947 57597947 C A TUBB1 Missense_Mutation p.S35R 0.28 tolerated_low_confidence(0.22) benign(0.154) TCGA-44-5644-01 20 61542655 61542655 C A DIDO1 Missense_Mutation p.A104S 0.31 possibly_damaging(0.519) TCGA-44-5644-01 20 61542656 61542656 G A DIDO1 Silent p.P103P 0.33 TCGA-44-5644-01 20 62076037 62076037 C A KCNQ2 Missense_Mutation p.G222V 0.57 deleterious(0) probably_damaging(1) TCGA-44-5644-01 20 62194534 62194534 C - HELZ2 Frame_Shift_Del p.D1881Tfs*89 0.38 TCGA-44-5644-01 20 896605 896605 G T ANGPT4 Missense_Mutation p.Q85K 0.36 tolerated(0.18) benign(0.043) TCGA-44-5644-01 20 9546657 9546657 G T PAK7 Silent p.I455I 0.39 TCGA-44-5644-01 21 10862951 10862951 T G IGHV1OR21-1 Missense_Mutation p.F83V 0.42 tolerated(0.1) possibly_damaging(0.814) TCGA-44-5644-01 21 10906961 10906961 C G TPTE Missense_Mutation p.E534Q 0.47 deleterious(0.01) probably_damaging(0.995) TCGA-44-5644-01 21 27945254 27945254 G A CYYR1 Silent p.D2D 0.54 TCGA-44-5644-01 21 28296872 28296872 C A ADAMTS5 Missense_Mutation p.A765S 0.74 tolerated(0.22) benign(0.078) TCGA-44-5644-01 21 28307054 28307054 C A ADAMTS5 Missense_Mutation p.D474Y 0.80 deleterious(0) possibly_damaging(0.757) TCGA-44-5644-01 21 31692034 31692034 C A KRTAP26-1 Missense_Mutation p.C107F 0.72 tolerated(0.08) possibly_damaging(0.69) TCGA-44-5644-01 21 37623566 37623566 G A DOPEY2 Missense_Mutation p.R1702H 0.24 tolerated(0.12) benign(0.008) TCGA-44-5644-01 21 40765117 40765117 G C WRB Missense_Mutation p.W121S 0.28 deleterious(0) possibly_damaging(0.864) TCGA-44-5644-01 21 41385052 41385052 G A DSCAM Missense_Mutation p.A1983V 0.24 deleterious_low_confidence(0.01) benign(0.001) TCGA-44-5644-01 21 45845686 45845686 G T TRPM2 Silent p.V1257V 0.82 TCGA-44-5644-01 21 45947323 45947323 C A TSPEAR Missense_Mutation p.R334L 0.80 tolerated(0.36) benign(0.004) TCGA-44-5644-01 21 46703297 46703297 C A POFUT2 Splice_Site p.X176_splice 0.41 TCGA-44-5644-01 21 47537831 47537831 G A COL6A2 Missense_Mutation p.R366Q 0.37 tolerated(0.58) benign(0.004) TCGA-44-5644-01 22 16256603 16256603 T A POTEH 3'UTR 0.08 TCGA-44-5644-01 22 18300793 18300793 G T MICAL3 Missense_Mutation p.T1545K 0.32 probably_damaging(0.998) TCGA-44-5644-01 22 21327772 21327772 G T AIFM3 Missense_Mutation p.A70S 0.68 tolerated(0.16) benign(0.164) TCGA-44-5644-01 22 26423063 26423063 C A MYO18B Missense_Mutation p.L2375M 0.74 deleterious(0.01) possibly_damaging(0.812) TCGA-44-5644-01 22 31583066 31583066 C T RNF185 5'UTR 0.72 TCGA-44-5644-01 22 32589152 32589152 G T RFPL2 Missense_Mutation p.A98E 0.86 tolerated(0.69) probably_damaging(0.939) TCGA-44-5644-01 22 32617003 32617003 G T SLC5A4 Missense_Mutation p.R558S 0.85 deleterious(0.02) possibly_damaging(0.749) TCGA-44-5644-01 22 34046644 34046644 G A LARGE Silent p.P39P 0.75 TCGA-44-5644-01 22 37485704 37485704 G T TMPRSS6 Silent p.L259L 0.81 TCGA-44-5644-01 22 38884145 38884145 G A DDX17 Intron 0.71 TCGA-44-5644-01 22 40075819 40075819 C A CACNA1I Missense_Mutation p.F1829L 0.75 tolerated(0.07) benign(0.153) TCGA-44-5644-01 22 41783370 41783370 A T TEF Missense_Mutation p.K58M 0.21 deleterious(0) possibly_damaging(0.518) TCGA-44-5644-01 22 42606592 42606592 C G TCF20 Missense_Mutation p.E1574Q 0.73 possibly_damaging(0.791) TCGA-44-5644-01 22 43460212 43460212 G T TTLL1 Missense_Mutation p.P208T 0.71 deleterious(0) probably_damaging(1) TCGA-44-5644-01 22 47370295 47370295 G T TBC1D22A Missense_Mutation p.Q375H 0.92 deleterious(0) possibly_damaging(0.782) TCGA-44-5644-01 2 103013009 103013009 A T IL18R1 Missense_Mutation p.H430L 0.29 deleterious(0.03) probably_damaging(0.973) TCGA-44-5644-01 2 105472187 105472187 C G POU3F3 Silent p.V73V 0.17 TCGA-44-5644-01 2 107040686 107040686 G T RGPD3 Missense_Mutation p.T1246K 0.46 deleterious(0) benign(0.065) TCGA-44-5644-01 2 107040866 107040866 C A RGPD3 Missense_Mutation p.G1186V 0.48 deleterious(0) possibly_damaging(0.727) TCGA-44-5644-01 2 107423241 107423241 G T ST6GAL2 Missense_Mutation p.L495M 0.49 benign(0.122) TCGA-44-5644-01 2 109388981 109388981 G T RANBP2 Missense_Mutation p.G2686V 0.48 deleterious(0) probably_damaging(0.93) TCGA-44-5644-01 2 109527314 109527314 G T EDAR Intron 0.53 TCGA-44-5644-01 2 113950125 113950125 G T PSD4 Missense_Mutation p.E599D 0.50 tolerated(0.92) benign(0.011) TCGA-44-5644-01 2 11696778 11696778 G C GREB1 Missense_Mutation p.R13P 0.12 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 2 121726466 121726466 G - GLI2 Frame_Shift_Del p.H275Ifs*26 0.28 TCGA-44-5644-01 2 125530445 125530445 C T CNTNAP5 Missense_Mutation p.S867F 0.43 tolerated(0.24) benign(0.2) TCGA-44-5644-01 2 125547669 125547669 C T CNTNAP5 Silent p.Y980Y 0.37 TCGA-44-5644-01 2 127944831 127944831 G T CYP27C1 3'UTR 0.33 TCGA-44-5644-01 2 128262644 128262644 C G IWS1 Missense_Mutation p.E279Q 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.744) TCGA-44-5644-01 2 131487510 131487510 C A GPR148 Silent p.T262T 0.32 TCGA-44-5644-01 2 131521440 131521440 G T AMER3 Missense_Mutation p.A599S 0.21 tolerated(0.85) benign(0.002) TCGA-44-5644-01 2 135744914 135744914 C T MAP3K19 Missense_Mutation p.G510R 0.10 tolerated(0.25) benign(0.002) TCGA-44-5644-01 2 135781051 135781051 G T MAP3K19 Intron 0.15 TCGA-44-5644-01 2 138033543 138033543 G T THSD7B Missense_Mutation p.W816L 0.26 deleterious(0) possibly_damaging(0.504) TCGA-44-5644-01 2 141093184 141093184 C T LRP1B Missense_Mutation p.G4039E 0.20 benign(0.027) TCGA-44-5644-01 2 141143466 141143466 G T LRP1B Missense_Mutation p.N3509K 0.18 possibly_damaging(0.728) TCGA-44-5644-01 2 141243066 141243066 C A LRP1B Missense_Mutation p.A3091S 0.34 possibly_damaging(0.694) TCGA-44-5644-01 2 141267567 141267567 G T LRP1B Silent p.P2776P 0.17 TCGA-44-5644-01 2 141625381 141625381 G T LRP1B Missense_Mutation p.L1453I 0.34 benign(0.364) TCGA-44-5644-01 2 141819818 141819818 C G LRP1B Silent p.G346G 0.16 TCGA-44-5644-01 2 142004822 142004822 C G LRP1B Missense_Mutation p.D189H 0.20 probably_damaging(0.961) TCGA-44-5644-01 2 1457524 1457524 T C TPO Missense_Mutation p.Y181H 0.58 deleterious(0) probably_damaging(0.998) TCGA-44-5644-01 2 14774171 14774171 G T FAM84A Missense_Mutation p.G23V 0.33 deleterious(0) probably_damaging(0.998) TCGA-44-5644-01 2 152698451 152698451 A T CACNB4 Missense_Mutation p.L423H 0.20 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-44-5644-01 2 155555868 155555868 T A KCNJ3 Missense_Mutation p.L194H 0.19 deleterious(0) probably_damaging(1) TCGA-44-5644-01 2 155711781 155711781 C A KCNJ3 Missense_Mutation p.L488I 0.35 deleterious_low_confidence(0.02) benign(0.123) TCGA-44-5644-01 2 157427724 157427724 G T GPD2 Missense_Mutation p.V563F 0.23 deleterious(0.01) possibly_damaging(0.466) TCGA-44-5644-01 2 159170324 159170325 - A CCDC148 Frame_Shift_Ins p.T283Yfs*16 0.29 TCGA-44-5644-01 2 160257129 160257129 C A BAZ2B Missense_Mutation p.R960L 0.29 probably_damaging(0.944) TCGA-44-5644-01 2 161029162 161029162 C - ITGB6 Frame_Shift_Del p.S280Tfs*3 0.18 TCGA-44-5644-01 2 161143570 161143570 C A RBMS1 Missense_Mutation p.K222N 0.49 deleterious(0) probably_damaging(0.996) TCGA-44-5644-01 2 161174686 161174686 A G RBMS1 Missense_Mutation p.C102R 0.21 deleterious(0) probably_damaging(1) TCGA-44-5644-01 2 162751263 162751263 G T SLC4A10 Missense_Mutation p.Q423H 0.36 deleterious(0) probably_damaging(0.998) TCGA-44-5644-01 2 163256746 163256746 C A KCNH7 Missense_Mutation p.R787I 0.28 deleterious(0) probably_damaging(0.995) TCGA-44-5644-01 2 163374347 163374347 C G KCNH7 Missense_Mutation p.R262T 0.19 tolerated(0.48) benign(0.044) TCGA-44-5644-01 2 166210893 166210893 T A SCN2A Missense_Mutation p.D1037E 0.23 tolerated(1) benign(0.001) TCGA-44-5644-01 2 166909404 166909404 A T SCN1A Missense_Mutation p.F218I 0.21 deleterious(0) probably_damaging(0.997) TCGA-44-5644-01 2 167134813 167134813 C A SCN9A Missense_Mutation p.G774V 0.24 tolerated(0.11) probably_damaging(0.921) TCGA-44-5644-01 2 167760382 167760382 A T XIRP2 Silent p.P130P 0.19 TCGA-44-5644-01 2 168100000 168100000 C A XIRP2 Missense_Mutation p.H700N 0.19 benign(0.026) TCGA-44-5644-01 2 168101897 168101897 A G XIRP2 Missense_Mutation p.H1332R 0.23 probably_damaging(1) TCGA-44-5644-01 2 169997053 169997053 T C LRP2 Missense_Mutation p.I4371V 0.22 benign(0.016) TCGA-44-5644-01 2 170038695 170038695 G T LRP2 Missense_Mutation p.A3327D 0.24 possibly_damaging(0.609) TCGA-44-5644-01 2 171238560 171238560 G T MYO3B Missense_Mutation p.V336L 0.19 tolerated(0.61) benign(0.002) TCGA-44-5644-01 2 172942622 172942622 G T METAP1D Missense_Mutation p.A268S 0.44 tolerated(0.63) possibly_damaging(0.527) TCGA-44-5644-01 2 173848254 173848254 G T RAPGEF4 Missense_Mutation p.E345D 0.14 tolerated(0.22) probably_damaging(0.997) TCGA-44-5644-01 2 175436453 175436453 C A WIPF1 Silent p.P360P 0.25 TCGA-44-5644-01 2 176794802 176794802 C T KIAA1715 Missense_Mutation p.E394K 0.11 tolerated(0.07) benign(0.195) TCGA-44-5644-01 2 176945402 176945402 C T EVX2 Silent p.P288P 0.42 TCGA-44-5644-01 2 176964796 176964796 A T HOXD12 Silent p.T89T 0.16 TCGA-44-5644-01 2 176981685 176981685 G T HOXD10 Missense_Mutation p.D42Y 0.21 deleterious(0) possibly_damaging(0.624) TCGA-44-5644-01 2 179429977 179429977 G T TTN Missense_Mutation p.A26961E 0.22 TCGA-44-5644-01 2 179432053 179432053 G A TTN Missense_Mutation p.S26269F 0.20 TCGA-44-5644-01 2 179434970 179434970 C A TTN Missense_Mutation p.V25297F 0.18 TCGA-44-5644-01 2 179439643 179439643 A G TTN Missense_Mutation p.V23739A 0.29 TCGA-44-5644-01 2 179444017 179444017 T C TTN Silent p.P22580P 0.28 TCGA-44-5644-01 2 179451449 179451449 A G TTN Silent p.D21393D 0.42 TCGA-44-5644-01 2 179469749 179469749 C T TTN Missense_Mutation p.G18052D 0.43 TCGA-44-5644-01 2 179528591 179528591 C T TTN Missense_Mutation p.V12135M 0.23 TCGA-44-5644-01 2 179588868 179588868 G T TTN Silent p.R7040R 0.39 TCGA-44-5644-01 2 179592014 179592014 C T TTN Missense_Mutation p.G6693E 0.23 TCGA-44-5644-01 2 179605447 179605447 C A TTN Missense_Mutation p.E4171D 0.48 TCGA-44-5644-01 2 179606386 179606386 C A TTN Silent p.V3858V 0.13 TCGA-44-5644-01 2 179606420 179606420 G T TTN Missense_Mutation p.P3847H 0.18 TCGA-44-5644-01 2 179611185 179611185 A T TTN Intron 0.32 TCGA-44-5644-01 2 179616287 179616287 C A TTN Intron 0.12 TCGA-44-5644-01 2 17963153 17963153 G T GEN1 Missense_Mutation p.D892Y 0.33 deleterious(0) probably_damaging(0.94) TCGA-44-5644-01 2 181922478 181922478 G T UBE2E3 Missense_Mutation p.G102C 0.16 deleterious(0) probably_damaging(0.994) TCGA-44-5644-01 2 185800519 185800519 A T ZNF804A Silent p.G132G 0.20 TCGA-44-5644-01 2 185800745 185800745 C A ZNF804A Missense_Mutation p.H208N 0.31 deleterious(0.01) probably_damaging(0.954) TCGA-44-5644-01 2 185802353 185802353 G C ZNF804A Missense_Mutation p.D744H 0.25 deleterious(0.01) possibly_damaging(0.579) TCGA-44-5644-01 2 187605149 187605149 G C FAM171B Missense_Mutation p.V145L 0.29 tolerated(0.07) benign(0.019) TCGA-44-5644-01 2 187692726 187692726 T C ZSWIM2 Silent p.E629E 0.26 TCGA-44-5644-01 2 188243735 188243735 C A CALCRL Silent p.L144L 0.27 TCGA-44-5644-01 2 189850439 189850439 C T COL3A1 Nonsense_Mutation p.Q128* 0.33 TCGA-44-5644-01 2 189856949 189856949 C A COL3A1 Missense_Mutation p.Q331K 0.28 unknown(0) TCGA-44-5644-01 2 189975122 189975122 T A COL5A2 Missense_Mutation p.R51W 0.38 probably_damaging(0.986) TCGA-44-5644-01 2 191843668 191843668 G A STAT1 Missense_Mutation p.P596L 0.35 deleterious(0) possibly_damaging(0.872) TCGA-44-5644-01 2 201438598 201438598 G - SGOL2 Frame_Shift_Del p.A1177Pfs*10 0.15 TCGA-44-5644-01 2 202251067 202251067 C A TRAK2 Missense_Mutation p.D613Y 0.24 deleterious(0) probably_damaging(1) TCGA-44-5644-01 2 202712183 202712183 G A CDK15 Missense_Mutation p.E311K 0.30 tolerated(0.26) benign(0.16) TCGA-44-5644-01 2 203765834 203765834 T C WDR12 Missense_Mutation p.K49E 0.41 tolerated(0.59) benign(0.026) TCGA-44-5644-01 2 207026613 207026613 A G EEF1B2 Intron 0.25 TCGA-44-5644-01 2 207175526 207175531 GCAGGA - ZDBF2 In_Frame_Del p.A2092_G2093del 0.41 TCGA-44-5644-01 2 207176280 207176280 G A ZDBF2 Missense_Mutation p.R2343Q 0.21 deleterious(0) benign(0.238) TCGA-44-5644-01 2 207414883 207414883 C T ADAM23 Missense_Mutation p.T311M 0.17 tolerated(1) benign(0.015) TCGA-44-5644-01 2 207516619 207516619 G A DYTN Silent p.L554L 0.34 TCGA-44-5644-01 2 207569613 207569613 C A DYTN Missense_Mutation p.R146L 0.15 tolerated(0.38) possibly_damaging(0.626) TCGA-44-5644-01 2 210640610 210640610 C G UNC80 Intron 0.19 TCGA-44-5644-01 2 210650818 210650818 G T UNC80 Missense_Mutation p.S210I 0.23 probably_damaging(0.922) TCGA-44-5644-01 2 211476930 211476930 C T CPS1 Silent p.L833L 0.27 TCGA-44-5644-01 2 211502454 211502454 A T CPS1 Missense_Mutation p.R912W 0.31 deleterious(0.01) possibly_damaging(0.575) TCGA-44-5644-01 2 211502455 211502455 G T CPS1 Missense_Mutation p.R912M 0.35 tolerated(0.08) benign(0.017) TCGA-44-5644-01 2 21230991 21230991 C T APOB Missense_Mutation p.G2917S 0.24 possibly_damaging(0.817) TCGA-44-5644-01 2 21237382 21237382 C A APOB Missense_Mutation p.E1260D 0.27 probably_damaging(0.978) TCGA-44-5644-01 2 216248813 216248813 A T FN1 Silent p.T1608T 0.28 TCGA-44-5644-01 2 217315567 217315567 A T SMARCAL1 Splice_Site p.X618_splice 0.16 TCGA-44-5644-01 2 219029096 219029096 C T CXCR1 Missense_Mutation p.R280H 0.15 deleterious(0.03) benign(0.117) TCGA-44-5644-01 2 219297606 219297606 C A VIL1 Silent p.R478R 0.28 TCGA-44-5644-01 2 220038082 220038082 C A CNPPD1 Missense_Mutation p.R227L 0.33 tolerated(0.34) benign(0.061) TCGA-44-5644-01 2 220309648 220309648 G T SPEG Missense_Mutation p.V194F 0.33 benign(0.299) TCGA-44-5644-01 2 220336998 220336998 G T SPEG Silent p.T1295T 0.34 TCGA-44-5644-01 2 220497732 220497732 G T SLC4A3 Splice_Site p.X453_splice 0.63 TCGA-44-5644-01 2 225266347 225266347 G T FAM124B Silent p.R47R 0.22 TCGA-44-5644-01 2 225652116 225652116 T A DOCK10 Splice_Site p.X1807_splice 0.30 TCGA-44-5644-01 2 228168586 228168586 A T COL4A3 Missense_Mutation p.N1323Y 0.16 unknown(0) TCGA-44-5644-01 2 228881413 228881413 G T SPHKAP Missense_Mutation p.S1386Y 0.25 tolerated(0.4) possibly_damaging(0.845) TCGA-44-5644-01 2 230377550 230377550 C A DNER Missense_Mutation p.D366Y 0.18 deleterious(0) probably_damaging(0.976) TCGA-44-5644-01 2 231106193 231106193 G T SP140 Missense_Mutation p.G161C 0.50 tolerated(0.1) possibly_damaging(0.598) TCGA-44-5644-01 2 231174726 231174726 T C SP140 Missense_Mutation p.C716R 0.22 deleterious(0) probably_damaging(0.998) TCGA-44-5644-01 2 233393312 233393312 C A CHRND Missense_Mutation p.P152H 0.21 deleterious(0) probably_damaging(0.993) TCGA-44-5644-01 2 233431634 233431634 G T EIF4E2 Silent p.G157G 0.27 TCGA-44-5644-01 2 234224723 234224723 G T SAG Silent p.V26V 0.33 TCGA-44-5644-01 2 234669003 234669003 G A UGT1A8 Intron 0.37 TCGA-44-5644-01 2 238253296 238253296 G T COL6A3 Silent p.T2455T 0.28 TCGA-44-5644-01 2 238283538 238283538 G T COL6A3 Missense_Mutation p.R1066S 0.10 probably_damaging(1) TCGA-44-5644-01 2 238303595 238303595 G T COL6A3 Missense_Mutation p.T115N 0.31 benign(0.296) TCGA-44-5644-01 2 238726219 238726219 A - RBM44 Frame_Shift_Del p.G221Efs*13 0.17 TCGA-44-5644-01 2 239003163 239003163 G T SCLY Missense_Mutation p.G378C 0.58 deleterious(0.02) probably_damaging(0.98) TCGA-44-5644-01 2 240969769 240969769 C A OR6B2 Silent p.L26L 0.26 TCGA-44-5644-01 2 241418978 241418978 C A ANKMY1 3'UTR 0.20 TCGA-44-5644-01 2 241533437 241533437 G T CAPN10 Missense_Mutation p.R268L 0.22 tolerated(0.28) possibly_damaging(0.462) TCGA-44-5644-01 2 242144350 242144350 G T ANO7 Silent p.L374L 0.28 TCGA-44-5644-01 2 26676226 26676226 C A DRC1 Missense_Mutation p.S576R 0.47 tolerated(0.22) benign(0.037) TCGA-44-5644-01 2 30785036 30785036 A T LCLAT1 Missense_Mutation p.Y168F 0.44 tolerated(1) benign(0.019) TCGA-44-5644-01 2 33810093 33810093 C G FAM98A Missense_Mutation p.G436A 0.50 tolerated_low_confidence(0.47) unknown(0) TCGA-44-5644-01 2 36668413 36668414 - T CRIM1 Frame_Shift_Ins p.C174Lfs*7 0.23 TCGA-44-5644-01 2 40366666 40366666 G T SLC8A1 Missense_Mutation p.S807Y 0.55 deleterious(0) probably_damaging(0.95) TCGA-44-5644-01 2 49195959 49195959 C A FSHR Silent p.L244L 0.61 TCGA-44-5644-01 2 49217719 49217719 G T FSHR Silent p.L144L 0.51 TCGA-44-5644-01 2 50699460 50699460 C A NRXN1 Nonsense_Mutation p.G1114* 0.16 TCGA-44-5644-01 2 54852007 54852007 C T SPTBN1 Nonsense_Mutation p.Q417* 0.46 TCGA-44-5644-01 2 54858121 54858121 G T SPTBN1 Missense_Mutation p.E979D 0.47 tolerated(0.07) possibly_damaging(0.549) TCGA-44-5644-01 2 56420123 56420123 G A CCDC85A Missense_Mutation p.R263K 0.30 tolerated_low_confidence(0.09) benign(0.015) TCGA-44-5644-01 2 58449132 58449132 G A FANCL Missense_Mutation p.P107S 0.34 tolerated(0.23) benign(0.008) TCGA-44-5644-01 2 73677960 73677960 G T ALMS1 Missense_Mutation p.G1435C 0.53 probably_damaging(0.927) TCGA-44-5644-01 2 73680643 73680643 G T ALMS1 Missense_Mutation p.R2329M 0.44 possibly_damaging(0.906) TCGA-44-5644-01 2 74129495 74129495 G T ACTG2 Missense_Mutation p.M45I 0.28 deleterious_low_confidence(0.04) benign(0.428) TCGA-44-5644-01 2 87201210 87201210 C T RGPD1 Missense_Mutation p.H422Y 0.26 deleterious(0.01) benign(0.136) TCGA-44-5644-01 2 89309746 89309747 - T IGKV1-9 Frame_Shift_Ins p.S29Vfs*24 0.13 TCGA-44-5644-01 2 90044287 90044287 A T IGKV2D-24 Nonsense_Mutation p.R70* 0.23 TCGA-44-5644-01 2 9008594 9008594 C G MBOAT2 Missense_Mutation p.L323F 0.19 deleterious(0) probably_damaging(0.984) TCGA-44-5644-01 2 95539816 95539816 G T TEKT4 Missense_Mutation p.V226L 0.23 tolerated(0.15) benign(0.02) TCGA-44-5644-01 3 100467004 100467004 C G TFG Missense_Mutation p.Q278E 0.42 tolerated(0.16) benign(0.042) TCGA-44-5644-01 3 100617622 100617622 G A ABI3BP Missense_Mutation p.H156Y 0.15 deleterious(0) benign(0.152) TCGA-44-5644-01 3 101573503 101573503 G T NFKBIZ Silent p.L473L 0.12 TCGA-44-5644-01 3 107096481 107096481 T A CCDC54 Missense_Mutation p.M16K 0.53 deleterious(0) possibly_damaging(0.775) TCGA-44-5644-01 3 108182078 108182078 T C MYH15 Missense_Mutation p.I602V 0.33 tolerated(0.14) benign(0.404) TCGA-44-5644-01 3 108572490 108572490 C A TRAT1 Nonsense_Mutation p.C109* 0.17 TCGA-44-5644-01 3 108703562 108703562 C A MORC1 Splice_Site p.X775_splice 0.20 TCGA-44-5644-01 3 108773722 108773722 C G MORC1 Missense_Mutation p.A395P 0.60 deleterious(0.01) possibly_damaging(0.901) TCGA-44-5644-01 3 109019251 109019251 C T DPPA2 Missense_Mutation p.V296I 0.15 tolerated(0.41) benign(0.001) TCGA-44-5644-01 3 111603476 111603476 C T PHLDB2 Silent p.S184S 0.33 TCGA-44-5644-01 3 111681104 111681104 A T PHLDB2 Missense_Mutation p.S1008C 0.59 deleterious(0) probably_damaging(1) TCGA-44-5644-01 3 111693436 111693436 G T PHLDB2 3'UTR 0.46 TCGA-44-5644-01 3 112337825 112337825 A T CCDC80 Missense_Mutation p.L721Q 0.51 deleterious(0) probably_damaging(0.986) TCGA-44-5644-01 3 112564525 112564525 C A CD200R1L Splice_Site p.X16_splice 0.49 TCGA-44-5644-01 3 113378522 113378522 C T KIAA2018 Silent p.Q669Q 0.31 TCGA-44-5644-01 3 113672953 113672953 A T ZDHHC23 Nonsense_Mutation p.K190* 0.14 TCGA-44-5644-01 3 115560705 115560705 G T LSAMP Missense_Mutation p.S302R 0.30 deleterious(0) probably_damaging(0.998) TCGA-44-5644-01 3 124053317 124053317 G T KALRN Missense_Mutation p.C539F 0.68 tolerated(0.21) unknown(0) TCGA-44-5644-01 3 124431918 124431918 C T KALRN Missense_Mutation p.P1041S 0.19 tolerated(0.14) possibly_damaging(0.904) TCGA-44-5644-01 3 126916269 126916269 G T C3orf56 3'UTR 0.42 TCGA-44-5644-01 3 130799421 130799421 G T NEK11 Nonsense_Mutation p.E109* 0.35 TCGA-44-5644-01 3 133358846 133358846 T A TOPBP1 Missense_Mutation p.R730S 0.34 deleterious(0) benign(0.342) TCGA-44-5644-01 3 13420447 13420447 T C NUP210 Missense_Mutation p.N337S 0.69 tolerated(0.17) benign(0.084) TCGA-44-5644-01 3 134911548 134911548 C G EPHB1 Missense_Mutation p.I671M 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-44-5644-01 3 14200156 14200156 C A XPC Missense_Mutation p.Q409H 0.81 deleterious(0.04) benign(0.401) TCGA-44-5644-01 3 142840050 142840050 C G CHST2 Missense_Mutation p.A131G 0.71 deleterious(0.03) unknown(0) TCGA-44-5644-01 3 145795655 145795655 G A PLOD2 Silent p.P519P 0.24 TCGA-44-5644-01 3 145841966 145841966 G C PLOD2 Missense_Mutation p.R54G 0.21 deleterious(0) probably_damaging(0.995) TCGA-44-5644-01 3 148583101 148583101 C A CPA3 Missense_Mutation p.L3I 0.32 tolerated(0.3) benign(0.003) TCGA-44-5644-01 3 155611422 155611422 T A GMPS Missense_Mutation p.L48Q 0.56 tolerated(0.06) possibly_damaging(0.559) TCGA-44-5644-01 3 155615827 155615827 G T GMPS Missense_Mutation p.M107I 0.27 deleterious(0.01) probably_damaging(0.913) TCGA-44-5644-01 3 158366915 158366915 G T GFM1 Nonsense_Mutation p.E220* 0.24 TCGA-44-5644-01 3 158787225 158787225 C A IQCJ Missense_Mutation p.R2S 0.23 tolerated_low_confidence(0.07) possibly_damaging(0.89) TCGA-44-5644-01 3 168269691 168269691 A C MIR551B RNA 0.53 TCGA-44-5644-01 3 171431773 171431773 A T PLD1 Missense_Mutation p.F274Y 0.49 deleterious(0.03) possibly_damaging(0.728) TCGA-44-5644-01 3 179426668 179426668 G T USP13 Missense_Mutation p.G243V 0.34 deleterious(0.01) probably_damaging(0.984) TCGA-44-5644-01 3 179460012 179460012 A C USP13 Missense_Mutation p.S470R 0.32 tolerated(0.15) possibly_damaging(0.749) TCGA-44-5644-01 3 179597742 179597742 G T PEX5L Silent p.V160V 0.25 TCGA-44-5644-01 3 186437939 186437939 G T KNG1 Missense_Mutation p.G81W 0.35 deleterious(0) probably_damaging(1) TCGA-44-5644-01 3 187416724 187416724 G T RTP2 Silent p.R80R 0.45 TCGA-44-5644-01 3 191092871 191092871 G T CCDC50 Missense_Mutation p.A157S 0.26 tolerated(0.2) probably_damaging(0.996) TCGA-44-5644-01 3 192516978 192516978 C A MB21D2 Missense_Mutation p.G225C 0.27 tolerated(0.17) benign(0.098) TCGA-44-5644-01 3 194118183 194118183 G T GP5 Missense_Mutation p.P277T 0.47 deleterious(0.03) probably_damaging(0.994) TCGA-44-5644-01 3 196812495 196812495 T A DLG1 Silent p.P631P 0.47 TCGA-44-5644-01 3 197402066 197402066 C A KIAA0226 Missense_Mutation p.E914D 0.27 tolerated(0.36) benign(0.03) TCGA-44-5644-01 3 25660275 25660275 G C TOP2B Missense_Mutation p.F1038L 0.43 deleterious(0) probably_damaging(0.993) TCGA-44-5644-01 3 25833306 25833306 A G OXSM Silent p.R265R 0.69 TCGA-44-5644-01 3 33870350 33870350 G T PDCD6IP Silent p.V246V 0.60 TCGA-44-5644-01 3 40573785 40573785 G T ZNF621 Missense_Mutation p.G175V 0.79 deleterious(0) possibly_damaging(0.896) TCGA-44-5644-01 3 42448644 42448644 C A LYZL4 Nonsense_Mutation p.G34* 0.82 TCGA-44-5644-01 3 42950387 42950387 G C ZNF662 Missense_Mutation p.R106T 0.31 tolerated(0.06) possibly_damaging(0.463) TCGA-44-5644-01 3 46539704 46539704 C A RTP3 Missense_Mutation p.A51D 0.76 deleterious(0) probably_damaging(0.995) TCGA-44-5644-01 3 54959164 54959164 G C LRTM1 Nonsense_Mutation p.S29* 0.92 TCGA-44-5644-01 3 58190582 58190582 C T DNASE1L3 Missense_Mutation p.S116N 0.60 tolerated(0.32) benign(0.008) TCGA-44-5644-01 3 7188305 7188305 G C GRM7 Missense_Mutation p.S229T 0.62 deleterious(0) benign(0.082) TCGA-44-5644-01 3 73433718 73433718 G T PDZRN3 Missense_Mutation p.P667T 0.18 tolerated(0.36) benign(0.01) TCGA-44-5644-01 3 73433800 73433800 C T PDZRN3 Silent p.P639P 0.31 TCGA-44-5644-01 3 7494431 7494431 C T GRM7 Missense_Mutation p.P438S 0.72 tolerated(0.18) benign(0.434) TCGA-44-5644-01 3 77671422 77671422 C A ROBO2 Missense_Mutation p.P1216Q 0.49 deleterious(0) possibly_damaging(0.884) TCGA-44-5644-01 3 79067694 79067694 C G ROBO1 Intron 0.18 TCGA-44-5644-01 3 89390994 89390995 CG A EPHA3 Frame_Shift_Del p.D356Mfs*15 0.22 TCGA-44-5644-01 3 89391031 89391031 G T EPHA3 Missense_Mutation p.C366F 0.33 deleterious(0) probably_damaging(0.998) TCGA-44-5644-01 3 89391033 89391033 G T EPHA3 Missense_Mutation p.G367W 0.33 tolerated(0.17) benign(0.018) TCGA-44-5644-01 3 97599971 97599971 G T CRYBG3 Missense_Mutation p.G406W 0.48 deleterious(0) probably_damaging(0.993) TCGA-44-5644-01 4 110223091 110223091 G C COL25A1 Missense_Mutation p.R29G 0.70 tolerated(0.46) unknown(0) TCGA-44-5644-01 4 110433128 110433128 A G SEC24B Missense_Mutation p.T598A 0.43 deleterious(0.02) benign(0.279) TCGA-44-5644-01 4 111464189 111464189 C A ENPEP Missense_Mutation p.R655S 0.70 deleterious(0) probably_damaging(0.998) TCGA-44-5644-01 4 111539292 111539292 G A PITX2 Missense_Mutation p.R322W 0.76 deleterious(0) probably_damaging(0.995) TCGA-44-5644-01 4 114279970 114279970 C A ANK2 Nonsense_Mutation p.S3399* 0.76 TCGA-44-5644-01 4 123350835 123350835 C A ADAD1 Missense_Mutation p.Q558K 0.85 deleterious(0.01) probably_damaging(0.909) TCGA-44-5644-01 4 128804507 128804507 T C PLK4 Silent p.L73L 0.36 TCGA-44-5644-01 4 134072994 134072994 C G PCDH10 Missense_Mutation p.Q567E 0.83 deleterious(0.02) probably_damaging(0.966) TCGA-44-5644-01 4 13603773 13603773 G A BOD1L1 Missense_Mutation p.T1584I 0.27 probably_damaging(0.999) TCGA-44-5644-01 4 143114323 143114323 C T INPP4B Silent p.V366V 0.80 TCGA-44-5644-01 4 151504910 151504910 G A MAB21L2 Missense_Mutation p.M243I 0.47 tolerated(0.21) benign(0.001) TCGA-44-5644-01 4 17516915 17516915 G T CLRN2 Missense_Mutation p.W9L 0.16 tolerated(0.75) benign(0.156) TCGA-44-5644-01 4 187455382 187455382 G C MTNR1A Missense_Mutation p.P172A 0.55 deleterious(0.03) benign(0.248) TCGA-44-5644-01 4 21950327 21950327 C T KCNIP4 5'UTR 0.33 TCGA-44-5644-01 4 22389609 22389609 C A GPR125 Nonsense_Mutation p.E1229* 0.19 TCGA-44-5644-01 4 2306276 2306276 G T ZFYVE28 Silent p.A597A 0.63 TCGA-44-5644-01 4 26484829 26484829 C G CCKAR Missense_Mutation p.E235Q 0.25 deleterious(0.01) probably_damaging(0.99) TCGA-44-5644-01 4 38776612 38776612 G T TLR10 Missense_Mutation p.D200E 0.66 tolerated(0.19) benign(0.001) TCGA-44-5644-01 4 39409048 39409048 C T KLB Missense_Mutation p.P160L 0.57 deleterious(0) probably_damaging(0.991) TCGA-44-5644-01 4 42145613 42145613 G C BEND4 Missense_Mutation p.P296A 0.60 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-44-5644-01 4 4276138 4276138 T A LYAR Missense_Mutation p.E263V 0.39 deleterious(0.02) benign(0.081) TCGA-44-5644-01 4 44450425 44450425 G T KCTD8 Missense_Mutation p.P39H 0.19 deleterious(0.02) benign(0.339) TCGA-44-5644-01 4 46305630 46305630 C A GABRA2 Splice_Site p.X235_splice 0.28 TCGA-44-5644-01 4 52779763 52779763 A T DCUN1D4 3'UTR 0.71 TCGA-44-5644-01 4 52861529 52861529 C A LRRC66 Silent p.V553V 0.80 TCGA-44-5644-01 4 52861699 52861699 C G LRRC66 Missense_Mutation p.A497P 0.68 tolerated(0.1) benign(0.059) TCGA-44-5644-01 4 5642297 5642297 T A EVC2 Nonsense_Mutation p.R472* 0.72 TCGA-44-5644-01 4 62542546 62542546 G T LPHN3 Missense_Mutation p.C91F 0.77 deleterious(0) probably_damaging(1) TCGA-44-5644-01 4 66280009 66280009 G T EPHA5 Silent p.T560T 0.85 TCGA-44-5644-01 4 68749681 68749681 C - TMPRSS11D 5'UTR 0.36 TCGA-44-5644-01 4 68934401 68934401 G T TMPRSS11F Silent p.G230G 0.81 TCGA-44-5644-01 4 70359506 70359506 G T UGT2B4 Silent p.R259R 0.63 TCGA-44-5644-01 4 74021863 74021863 C A ANKRD17 Missense_Mutation p.C242F 0.68 probably_damaging(0.979) TCGA-44-5644-01 4 8368611 8368623 TGGAATCAGAAGT - ACOX3 3'UTR 0.91 TCGA-44-5644-01 4 85687018 85687018 T G WDFY3 Silent p.G1711G 0.75 TCGA-44-5644-01 4 8588916 8588916 C A GPR78 Silent p.A306A 0.68 TCGA-44-5644-01 4 877135 877135 T A GAK Missense_Mutation p.R458W 0.70 deleterious(0) probably_damaging(0.994) TCGA-44-5644-01 4 88898093 88898093 G T SPP1 Missense_Mutation p.A16S 0.50 tolerated(0.26) possibly_damaging(0.745) TCGA-44-5644-01 4 94436514 94436514 C A GRID2 Missense_Mutation p.S715R 0.17 deleterious(0.02) benign(0.365) TCGA-44-5644-01 5 112257941 112257941 C A REEP5 5'UTR 0.33 TCGA-44-5644-01 5 112676326 112676326 C A MCC Nonsense_Mutation p.E173* 0.41 TCGA-44-5644-01 5 11364904 11364904 C A CTNND2 Missense_Mutation p.D426Y 0.78 deleterious(0) possibly_damaging(0.88) TCGA-44-5644-01 5 126738321 126738321 G T MEGF10 Silent p.T288T 0.65 TCGA-44-5644-01 5 126781278 126781278 C A MEGF10 Missense_Mutation p.A874E 0.69 deleterious(0.01) benign(0.244) TCGA-44-5644-01 5 131879088 131879088 G T IL5 Missense_Mutation p.A28E 0.68 tolerated(0.6) benign(0.066) TCGA-44-5644-01 5 139574143 139574143 G - CYSTM1 Frame_Shift_Del p.G33Dfs*34 0.48 TCGA-44-5644-01 5 140166961 140166961 C T PCDHA1 Silent p.D362D 0.75 TCGA-44-5644-01 5 140188221 140188221 C A PCDHA4 Missense_Mutation p.D483E 0.69 deleterious_low_confidence(0) possibly_damaging(0.86) TCGA-44-5644-01 5 140216116 140216116 G T PCDHA7 Silent p.L716L 0.80 TCGA-44-5644-01 5 140263635 140263636 GC - PCDHA13 Frame_Shift_Del p.A596Gfs*14 0.45 TCGA-44-5644-01 5 140480640 140480640 A T PCDHB3 Missense_Mutation p.N136I 0.69 deleterious_low_confidence(0.01) benign(0.002) TCGA-44-5644-01 5 140596212 140596212 G T PCDHB13 3'UTR 0.73 TCGA-44-5644-01 5 140627302 140627302 C A PCDHB15 Missense_Mutation p.A719E 0.70 tolerated_low_confidence(0.15) benign(0.068) TCGA-44-5644-01 5 140627303 140627303 G C PCDHB15 Silent p.A719A 0.69 TCGA-44-5644-01 5 149247310 149247310 G T PDE6A Missense_Mutation p.T751K 0.74 deleterious(0.03) benign(0.222) TCGA-44-5644-01 5 151266284 151266284 T C GLRA1 Missense_Mutation p.M84V 0.71 deleterious(0) probably_damaging(0.991) TCGA-44-5644-01 5 156565704 156565704 C A MED7 3'UTR 0.67 TCGA-44-5644-01 5 15936989 15936989 G T FBXL7 Silent p.T390T 0.44 TCGA-44-5644-01 5 160059308 160059308 A T ATP10B Missense_Mutation p.L483Q 0.29 tolerated(0.3) benign(0.14) TCGA-44-5644-01 5 16067808 16067808 G T MARCH11 Silent p.A327A 0.40 TCGA-44-5644-01 5 16067809 16067809 G T MARCH11 Missense_Mutation p.A327D 0.39 deleterious(0.01) benign(0.443) TCGA-44-5644-01 5 160761777 160761777 C A GABRB2 Missense_Mutation p.A272S 0.63 tolerated(0.58) probably_damaging(0.962) TCGA-44-5644-01 5 167643927 167643927 G T TENM2 Missense_Mutation p.Q1411H 0.73 deleterious(0) probably_damaging(0.938) TCGA-44-5644-01 5 168096807 168096807 G A SLIT3 Silent p.S1439S 0.38 TCGA-44-5644-01 5 169174459 169174459 C T DOCK2 Missense_Mutation p.S776F 0.65 deleterious(0) probably_damaging(0.923) TCGA-44-5644-01 5 176517421 176517421 A T FGFR4 Missense_Mutation p.Q41L 0.77 tolerated(0.33) benign(0) TCGA-44-5644-01 5 176696757 176696757 G A NSD1 Missense_Mutation p.V1820M 0.22 deleterious(0) probably_damaging(0.968) TCGA-44-5644-01 5 176923490 176923490 C T PDLIM7 Silent p.L8L 0.36 TCGA-44-5644-01 5 24535924 24535924 A T CDH10 Silent p.S178S 0.21 TCGA-44-5644-01 5 33462206 33462206 A G TARS Missense_Mutation p.H611R 0.12 tolerated(0.16) benign(0.017) TCGA-44-5644-01 5 33576396 33576396 G T ADAMTS12 Silent p.A1245A 0.19 TCGA-44-5644-01 5 35048020 35048020 C T AGXT2 5'UTR 0.13 TCGA-44-5644-01 5 36066872 36066872 A G UGT3A2 Missense_Mutation p.L7P 0.21 tolerated(0.05) possibly_damaging(0.705) TCGA-44-5644-01 5 37396476 37396476 G T WDR70 Splice_Site p.X99_splice 0.46 TCGA-44-5644-01 5 39316073 39316073 T A C9 Missense_Mutation p.K225I 0.08 deleterious(0.01) benign(0.374) TCGA-44-5644-01 5 41051185 41051185 G T MROH2B Missense_Mutation p.P413Q 0.21 tolerated(0.06) benign(0.003) TCGA-44-5644-01 5 41181494 41181494 G A C6 Silent p.A298A 0.12 TCGA-44-5644-01 5 42629194 42629194 G T GHR Missense_Mutation p.G42V 0.94 tolerated_low_confidence(0.12) benign(0.003) TCGA-44-5644-01 5 43675653 43675653 A G NNT Missense_Mutation p.Y892C 0.14 deleterious(0.01) probably_damaging(0.975) TCGA-44-5644-01 5 45303797 45303797 C A HCN1 Missense_Mutation p.V508L 0.24 tolerated(0.16) probably_damaging(0.977) TCGA-44-5644-01 5 52096767 52096767 G T PELO Missense_Mutation p.R180L 0.48 deleterious(0.01) benign(0.026) TCGA-44-5644-01 5 52780023 52780023 T C FST Silent p.C207C 0.36 TCGA-44-5644-01 5 63905072 63905072 C A RGS7BP Nonsense_Mutation p.S256* 0.80 TCGA-44-5644-01 5 65321770 65321770 G T ERBB2IP Missense_Mutation p.A329S 0.27 deleterious(0.02) benign(0.192) TCGA-44-5644-01 5 7784549 7784549 T C ADCY2 Missense_Mutation p.V819A 0.36 tolerated(0.14) benign(0.023) TCGA-44-5644-01 5 7802380 7802380 T C ADCY2 Missense_Mutation p.I893T 0.14 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 5 7878080 7878080 G T MTRR Missense_Mutation p.W169L 0.25 deleterious(0) probably_damaging(0.965) TCGA-44-5644-01 5 7892928 7892928 G A MTRR Missense_Mutation p.G514R 0.71 deleterious(0) probably_damaging(0.998) TCGA-44-5644-01 5 82818083 82818083 C A VCAN Missense_Mutation p.P1320T 0.79 deleterious(0.01) benign(0.424) TCGA-44-5644-01 5 94353140 94353140 C T MCTP1 Missense_Mutation p.D257N 0.69 tolerated(0.43) benign(0.004) TCGA-44-5644-01 6 110714269 110714269 G T DDO Silent p.S273S 0.72 TCGA-44-5644-01 6 116752286 116752286 C T DSE Silent p.F280F 0.32 TCGA-44-5644-01 6 129419478 129419478 C A LAMA2 Missense_Mutation p.T186N 0.71 tolerated(0.07) possibly_damaging(0.906) TCGA-44-5644-01 6 131211455 131211455 C A EPB41L2 Missense_Mutation p.V547F 0.77 deleterious(0.02) possibly_damaging(0.807) TCGA-44-5644-01 6 132173314 132173314 G A ENPP1 Splice_Site p.X186_splice 0.57 TCGA-44-5644-01 6 132910408 132910408 G - TAAR5 Frame_Shift_Del p.L140Cfs*9 0.43 TCGA-44-5644-01 6 133073888 133073888 A C VNN2 Missense_Mutation p.Y180D 0.39 deleterious(0.01) probably_damaging(0.954) TCGA-44-5644-01 6 13612223 13612223 G C SIRT5 3'UTR 0.64 TCGA-44-5644-01 6 136599569 136599569 A G BCLAF1 Silent p.Y150Y 0.26 TCGA-44-5644-01 6 142759436 142759436 C T GPR126 Missense_Mutation p.S1170L 0.86 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 6 143095484 143095485 - C HIVEP2 Frame_Shift_Ins p.P131Rfs*6 0.45 TCGA-44-5644-01 6 151055096 151055096 G T PLEKHG1 Silent p.V93V 0.76 TCGA-44-5644-01 6 159653822 159653822 C T FNDC1 Missense_Mutation p.R760W 0.45 deleterious_low_confidence(0) unknown(0) TCGA-44-5644-01 6 165846533 165846533 C A PDE10A Missense_Mutation p.G208C 0.39 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 6 167413566 167413566 G C FGFR1OP Missense_Mutation p.V41L 0.67 deleterious(0) possibly_damaging(0.598) TCGA-44-5644-01 6 17292138 17292138 G A RBM24 Missense_Mutation p.A167T 0.36 tolerated(0.52) benign(0.431) TCGA-44-5644-01 6 25913457 25913457 G T SLC17A2 3'UTR 0.91 TCGA-44-5644-01 6 26431538 26431538 C G BTN2A3P RNA 0.76 TCGA-44-5644-01 6 28872321 28872321 C A TRIM27 Silent p.L356L 0.90 TCGA-44-5644-01 6 29644687 29644687 C A ZFP57 Missense_Mutation p.D32Y 0.85 deleterious(0) possibly_damaging(0.742) TCGA-44-5644-01 6 30121889 30121889 G C TRIM10 Missense_Mutation p.L435V 0.56 deleterious(0) benign(0.026) TCGA-44-5644-01 6 31617043 31617043 C A BAG6 Missense_Mutation p.G119V 0.89 tolerated(0.19) benign(0.002) TCGA-44-5644-01 6 32138714 32138714 C A AGPAT1 Missense_Mutation p.G112W 0.80 deleterious(0) probably_damaging(0.984) TCGA-44-5644-01 6 34558315 34558315 T C C6orf106 3'UTR 0.34 TCGA-44-5644-01 6 37623514 37623514 C A MDGA1 Missense_Mutation p.D181Y 0.72 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 6 46826559 46826559 C A GPR116 Missense_Mutation p.L1027F 0.86 deleterious(0) probably_damaging(1) TCGA-44-5644-01 6 50683290 50683290 C A TFAP2D Missense_Mutation p.S167R 0.44 tolerated(0.23) benign(0.012) TCGA-44-5644-01 6 50683293 50683293 G T TFAP2D Silent p.L168L 0.44 TCGA-44-5644-01 6 51613290 51613290 T C PKHD1 Missense_Mutation p.I3042V 0.24 tolerated(0.89) benign(0.019) TCGA-44-5644-01 6 51774135 51774135 C G PKHD1 Missense_Mutation p.G2210R 0.47 deleterious(0) probably_damaging(1) TCGA-44-5644-01 6 55223723 55223723 C A GFRAL Missense_Mutation p.R247S 0.62 deleterious(0.02) benign(0.078) TCGA-44-5644-01 6 56373489 56373489 C A DST Missense_Mutation p.E3736D 0.27 benign(0.205) TCGA-44-5644-01 6 56846713 56846713 C A BEND6 Missense_Mutation p.D35E 0.47 tolerated_low_confidence(0.35) benign(0.331) TCGA-44-5644-01 6 66205227 66205227 C T EYS Missense_Mutation p.R26Q 0.86 tolerated_low_confidence(0.35) benign(0.002) TCGA-44-5644-01 6 70462161 70462161 C G LMBRD1 Missense_Mutation p.S132T 0.50 tolerated(0.74) benign(0.018) TCGA-44-5644-01 6 79695070 79695070 T A PHIP Missense_Mutation p.S846C 0.30 deleterious(0) probably_damaging(0.981) TCGA-44-5644-01 6 87796136 87796136 C A CGA Silent p.T35T 0.33 TCGA-44-5644-01 6 89600240 89600240 T A RNGTT Missense_Mutation p.K290N 0.65 deleterious(0.03) probably_damaging(0.982) TCGA-44-5644-01 6 89868113 89868113 A G PM20D2 Missense_Mutation p.M328V 0.84 tolerated(0.3) benign(0) TCGA-44-5644-01 6 90576933 90576933 A T CASP8AP2 RNA 0.72 TCGA-44-5644-01 7 100469167 100469167 C A TRIP6 Silent p.A334A 0.54 TCGA-44-5644-01 7 100674437 100674437 G C MUC17 Missense_Mutation p.G40A 0.17 benign(0) TCGA-44-5644-01 7 100686270 100686270 C T MUC17 Missense_Mutation p.P3858L 0.59 possibly_damaging(0.713) TCGA-44-5644-01 7 100773862 100773862 C A SERPINE1 Silent p.V144V 0.49 TCGA-44-5644-01 7 1015098 1015098 G A COX19 Silent p.P16P 0.17 TCGA-44-5644-01 7 103252090 103252090 T G RELN Missense_Mutation p.N955H 0.68 deleterious(0.01) benign(0.026) TCGA-44-5644-01 7 106508673 106508673 G A PIK3CG Missense_Mutation p.V223I 0.38 tolerated(0.34) benign(0.027) TCGA-44-5644-01 7 107546743 107546743 G C DLD Missense_Mutation p.G205A 0.14 deleterious(0) probably_damaging(1) TCGA-44-5644-01 7 107704224 107704224 G T LAMB4 Missense_Mutation p.L1015I 0.20 tolerated(0.15) benign(0.202) TCGA-44-5644-01 7 107704254 107704254 G T LAMB4 Missense_Mutation p.L1005I 0.69 tolerated(0.34) benign(0.345) TCGA-44-5644-01 7 107706881 107706881 G T LAMB4 Missense_Mutation p.L871I 0.10 tolerated(0.14) possibly_damaging(0.544) TCGA-44-5644-01 7 107818536 107818536 A C NRCAM Missense_Mutation p.L958W 0.79 deleterious(0.01) probably_damaging(1) TCGA-44-5644-01 7 107818538 107818538 A T NRCAM Silent p.S957S 0.76 TCGA-44-5644-01 7 107872908 107872908 T C NRCAM Missense_Mutation p.M97V 0.28 deleterious(0) possibly_damaging(0.563) TCGA-44-5644-01 7 112090695 112090695 G T IFRD1 5'UTR 0.17 TCGA-44-5644-01 7 113519556 113519556 T C PPP1R3A Missense_Mutation p.R531G 0.14 tolerated(0.67) benign(0) TCGA-44-5644-01 7 114655761 114655761 C T MDFIC Silent p.I280I 0.17 TCGA-44-5644-01 7 120991232 120991232 C A FAM3C Missense_Mutation p.G187W 0.41 deleterious(0) possibly_damaging(0.831) TCGA-44-5644-01 7 121653039 121653039 T A PTPRZ1 Silent p.A1313A 0.61 TCGA-44-5644-01 7 123593726 123593726 G T SPAM1 Missense_Mutation p.L34F 0.21 tolerated(0.17) benign(0.151) TCGA-44-5644-01 7 126698174 126698174 C A GRM8 Intron 0.27 TCGA-44-5644-01 7 128446887 128446887 C A CCDC136 Missense_Mutation p.A465D 0.55 tolerated(0.25) benign(0.017) TCGA-44-5644-01 7 128491636 128491636 C T FLNC Silent p.F1932F 0.17 TCGA-44-5644-01 7 129962351 129962351 C G CPA4 Missense_Mutation p.I367M 0.22 deleterious(0.01) possibly_damaging(0.789) TCGA-44-5644-01 7 129987644 129987644 C T CPA5 Nonsense_Mutation p.Q52* 0.48 TCGA-44-5644-01 7 131865396 131865396 A T PLXNA4 Missense_Mutation p.D1196E 0.15 tolerated(1) benign(0.046) TCGA-44-5644-01 7 131870220 131870220 C T PLXNA4 Missense_Mutation p.R999Q 0.50 deleterious(0.04) benign(0.328) TCGA-44-5644-01 7 132193098 132193098 G C PLXNA4 Missense_Mutation p.L119V 0.27 tolerated(0.35) probably_damaging(0.999) TCGA-44-5644-01 7 134133180 134133180 C A AKR1B1 Silent p.V206V 0.49 TCGA-44-5644-01 7 134939889 134939889 C A STRA8 Missense_Mutation p.P277Q 0.44 tolerated(0.3) benign(0.137) TCGA-44-5644-01 7 139268706 139268706 C A HIPK2 Missense_Mutation p.R941L 0.45 tolerated(0.67) benign(0.239) TCGA-44-5644-01 7 13971305 13971305 A G ETV1 Silent p.R208R 0.22 TCGA-44-5644-01 7 140125837 140125837 G A RAB19 Missense_Mutation p.A181T 0.21 tolerated(0.45) benign(0.172) TCGA-44-5644-01 7 141730165 141730165 G A MGAM Missense_Mutation p.V409I 0.50 tolerated(0.13) possibly_damaging(0.783) TCGA-44-5644-01 7 142001199 142001199 G T TRBV2 Missense_Mutation p.K64N 0.50 TCGA-44-5644-01 7 142120086 142120086 G T TRBV7-7 Silent p.P27P 0.19 TCGA-44-5644-01 7 142640966 142640966 T A KEL Missense_Mutation p.Q499L 0.59 deleterious(0) benign(0.146) TCGA-44-5644-01 7 142658584 142658584 G T KEL Missense_Mutation p.T29N 0.36 tolerated(0.08) benign(0.015) TCGA-44-5644-01 7 143016925 143016925 T C CLCN1 Silent p.S86S 0.33 TCGA-44-5644-01 7 143016952 143016956 CTATT - CLCN1 Frame_Shift_Del p.Y96* 0.33 TCGA-44-5644-01 7 143826988 143826988 C A OR2A14 Silent p.P261P 0.53 TCGA-44-5644-01 7 149462853 149462853 G A ZNF467 Silent p.C246C 0.14 TCGA-44-5644-01 7 149531024 149531024 C A ZNF862 5'Flank 0.33 TCGA-44-5644-01 7 149558392 149558392 G T ZNF862 Missense_Mutation p.V715F 0.31 deleterious(0.01) benign(0.393) TCGA-44-5644-01 7 150093882 150093882 G T ZNF775 Missense_Mutation p.G105C 0.41 deleterious(0) probably_damaging(1) TCGA-44-5644-01 7 150502118 150502118 C A TMEM176A 3'UTR 0.80 TCGA-44-5644-01 7 151927043 151927044 CA - KMT2C Frame_Shift_Del p.C980Wfs*12 0.09 TCGA-44-5644-01 7 154561225 154561225 C A DPP6 Missense_Mutation p.L328I 0.51 tolerated(0.68) benign(0.04) TCGA-44-5644-01 7 158590748 158590748 G T ESYT2 Missense_Mutation p.P179H 0.29 deleterious(0) probably_damaging(1) TCGA-44-5644-01 7 18688206 18688206 C A HDAC9 Missense_Mutation p.P456H 0.70 deleterious(0) probably_damaging(1) TCGA-44-5644-01 7 23309650 23309659 TGCAGCCCTG GGAACCCCTT GPNMB Missense_Mutation p.CSPV441GTPL 0.29 TCGA-44-5644-01 7 2608599 2608599 G T IQCE Missense_Mutation p.R32S 0.68 deleterious(0) possibly_damaging(0.844) TCGA-44-5644-01 7 31691583 31691583 T A CCDC129 Silent p.R940R 0.44 TCGA-44-5644-01 7 36438851 36438851 C T ANLN Silent p.T112T 0.41 TCGA-44-5644-01 7 36438854 36438854 C T ANLN Silent p.I113I 0.40 TCGA-44-5644-01 7 37264516 37264516 G T ELMO1 Silent p.I223I 0.34 TCGA-44-5644-01 7 38500884 38500884 T A AMPH Missense_Mutation p.Q339L 0.30 deleterious(0.01) benign(0.283) TCGA-44-5644-01 7 39379546 39379546 C A POU6F2 Missense_Mutation p.P273T 0.49 deleterious_low_confidence(0.03) unknown(0) TCGA-44-5644-01 7 44153353 44153353 C G AEBP1 Missense_Mutation p.I990M 0.17 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 7 45701758 45701758 T A ADCY1 Missense_Mutation p.M517K 0.18 deleterious_low_confidence(0) benign(0.15) TCGA-44-5644-01 7 48026797 48026797 G T SUN3 3'UTR 0.44 TCGA-44-5644-01 7 48308601 48308601 T G ABCA13 Missense_Mutation p.F677C 0.20 benign(0.312) TCGA-44-5644-01 7 48563910 48563910 G T ABCA13 Missense_Mutation p.K4706N 0.45 benign(0.024) TCGA-44-5644-01 7 53103601 53103601 G T POM121L12 Missense_Mutation p.E79D 0.20 tolerated(0.6) benign(0) TCGA-44-5644-01 7 54617822 54617822 C T VSTM2A Missense_Mutation p.P198L 0.58 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 7 55914330 55914330 G T SEPT14 Missense_Mutation p.Q19K 0.20 tolerated(0.56) benign(0) TCGA-44-5644-01 7 70231275 70231275 C T AUTS2 Silent p.H548H 0.24 TCGA-44-5644-01 7 72413237 72413237 C G POM121 Missense_Mutation p.S637C 0.12 deleterious(0.02) probably_damaging(0.983) TCGA-44-5644-01 7 72738485 72738485 C A TRIM50 Nonsense_Mutation p.E101* 0.26 TCGA-44-5644-01 7 72984917 72984917 C A TBL2 Nonsense_Mutation p.E422* 0.44 TCGA-44-5644-01 7 77789350 77789350 G T MAGI2 Missense_Mutation p.S946Y 0.34 deleterious(0) possibly_damaging(0.861) TCGA-44-5644-01 7 803566 803566 C T HEATR2 Missense_Mutation p.H580Y 0.18 tolerated(0.73) benign(0.004) TCGA-44-5644-01 7 8153502 8153502 C G ICA1 3'UTR 0.49 TCGA-44-5644-01 7 82390062 82390062 G T PCLO Missense_Mutation p.Q5061K 0.53 unknown(0) TCGA-44-5644-01 7 82453732 82453732 C A PCLO Missense_Mutation p.V4806L 0.50 unknown(0) TCGA-44-5644-01 7 84636136 84636136 C A SEMA3D Silent p.G630G 0.55 TCGA-44-5644-01 7 89790487 89790487 A G STEAP1 Silent p.P151P 0.24 TCGA-44-5644-01 7 91504069 91504069 T A MTERF Missense_Mutation p.K13N 0.32 tolerated_low_confidence(0.2) benign(0.205) TCGA-44-5644-01 7 92210862 92210862 C A FAM133B Missense_Mutation p.G27V 0.13 deleterious(0) possibly_damaging(0.839) TCGA-44-5644-01 7 92730517 92730517 C T SAMD9 3'UTR 0.50 TCGA-44-5644-01 7 92848567 92848567 C G HEPACAM2 Missense_Mutation p.E93Q 0.40 tolerated(0.15) possibly_damaging(0.874) TCGA-44-5644-01 7 97361920 97361920 C AA TAC1 5'UTR 0.30 TCGA-44-5644-01 7 99146057 99146057 T C FAM200A 5'UTR 0.58 TCGA-44-5644-01 8 100883035 100883035 T G VPS13B Silent p.L3830L 0.14 TCGA-44-5644-01 8 103287962 103287962 C A UBR5 Nonsense_Mutation p.E2202* 0.62 TCGA-44-5644-01 8 104709475 104709475 C A RIMS2 Missense_Mutation p.T113K 0.24 deleterious_low_confidence(0.01) probably_damaging(0.917) TCGA-44-5644-01 8 110467032 110467032 C T PKHD1L1 Silent p.V2275V 0.64 TCGA-44-5644-01 8 110539098 110539098 T C PKHD1L1 Silent p.S4190S 0.35 TCGA-44-5644-01 8 113256691 113256691 G T CSMD3 Missense_Mutation p.A3445E 0.27 deleterious(0.01) possibly_damaging(0.493) TCGA-44-5644-01 8 113347650 113347650 G T CSMD3 Missense_Mutation p.A2358D 0.14 deleterious(0) benign(0.223) TCGA-44-5644-01 8 113516144 113516144 G T CSMD3 Missense_Mutation p.P1653Q 0.67 deleterious(0.01) benign(0.052) TCGA-44-5644-01 8 113569102 113569102 C A CSMD3 Missense_Mutation p.S1375I 0.33 deleterious(0) possibly_damaging(0.907) TCGA-44-5644-01 8 11415488 11415488 C A BLK Missense_Mutation p.L324M 0.66 deleterious(0) probably_damaging(0.969) TCGA-44-5644-01 8 114449207 114449207 G C CSMD3 5'UTR 0.32 TCGA-44-5644-01 8 11607676 11607676 G C GATA4 Silent p.T280T 0.72 TCGA-44-5644-01 8 116599801 116599801 C A TRPS1 Missense_Mutation p.Q709H 0.10 tolerated_low_confidence(0.33) possibly_damaging(0.672) TCGA-44-5644-01 8 116631772 116631772 C A TRPS1 Missense_Mutation p.A185S 0.26 tolerated_low_confidence(0.24) benign(0.009) TCGA-44-5644-01 8 11831445 11831445 T A DEFB136 3'Flank 0.75 TCGA-44-5644-01 8 120430298 120430298 C A NOV Missense_Mutation p.A104E 0.66 deleterious(0) benign(0.221) TCGA-44-5644-01 8 120629482 120629482 C A ENPP2 Missense_Mutation p.R193S 0.19 tolerated(0.08) probably_damaging(0.997) TCGA-44-5644-01 8 124105846 124105846 T C TBC1D31 Silent p.L179L 0.13 TCGA-44-5644-01 8 124361643 124361643 T C ATAD2 Missense_Mutation p.D563G 0.14 deleterious(0) probably_damaging(0.99) TCGA-44-5644-01 8 132957094 132957094 A C EFR3A Silent p.R64R 0.13 TCGA-44-5644-01 8 13356745 13356746 AG - DLC1 Frame_Shift_Del p.L279Afs*12 0.48 TCGA-44-5644-01 8 133764037 133764037 A G TMEM71 Missense_Mutation p.L103S 0.13 tolerated(0.06) possibly_damaging(0.858) TCGA-44-5644-01 8 133941393 133941393 C A TG Missense_Mutation p.S1591Y 0.13 deleterious(0) possibly_damaging(0.705) TCGA-44-5644-01 8 133961041 133961041 C T TG Silent p.L1752L 0.12 TCGA-44-5644-01 8 134145856 134145856 G T TG Missense_Mutation p.D2714Y 0.12 deleterious(0) benign(0.185) TCGA-44-5644-01 8 135614601 135614601 T G ZFAT Missense_Mutation p.H454P 0.79 deleterious(0) probably_damaging(0.998) TCGA-44-5644-01 8 139155347 139155347 G A FAM135B Silent p.D1182D 0.11 TCGA-44-5644-01 8 139323093 139323093 C A FAM135B Missense_Mutation p.G50W 0.06 deleterious(0) probably_damaging(0.933) TCGA-44-5644-01 8 143620762 143620762 G T BAI1 Missense_Mutation p.A1232S 0.70 deleterious(0.03) benign(0.003) TCGA-44-5644-01 8 143694774 143694774 C T ARC Missense_Mutation p.E287K 0.16 tolerated(0.1) benign(0.113) TCGA-44-5644-01 8 17731968 17731968 G T FGL1 Missense_Mutation p.Q103K 0.78 tolerated(0.92) benign(0.159) TCGA-44-5644-01 8 35579785 35579785 C A UNC5D Missense_Mutation p.A392D 0.37 deleterious(0.01) possibly_damaging(0.701) TCGA-44-5644-01 8 37632908 37632908 A T PROSC Missense_Mutation p.N169I 0.76 tolerated(0.49) benign(0.001) TCGA-44-5644-01 8 41545671 41545671 C A ANK1 Intron 0.76 TCGA-44-5644-01 8 42401673 42401673 G A SMIM19 Missense_Mutation p.E20K 0.45 tolerated_low_confidence(0.2) benign(0.073) TCGA-44-5644-01 8 48744433 48744433 T C PRKDC Missense_Mutation p.Q2735R 0.11 benign(0.012) TCGA-44-5644-01 8 48873661 48873661 G T MCM4 5'UTR 0.62 TCGA-44-5644-01 8 52366284 52366284 A T PXDNL Silent p.T348T 0.08 TCGA-44-5644-01 8 52733126 52733126 T A PCMTD1 Missense_Mutation p.T287S 0.05 tolerated(0.35) benign(0.014) TCGA-44-5644-01 8 53085144 53085144 C G ST18 Splice_Site p.X93_splice 0.73 TCGA-44-5644-01 8 61121394 61121394 G A CA8 Missense_Mutation p.R275W 0.18 deleterious(0) probably_damaging(1) TCGA-44-5644-01 8 67547476 67547476 C A VCPIP1 Missense_Mutation p.D977Y 0.29 deleterious(0) possibly_damaging(0.736) TCGA-44-5644-01 8 67755688 67755688 A G SGK3 Missense_Mutation p.Y327C 0.06 deleterious(0) probably_damaging(0.994) TCGA-44-5644-01 8 68107672 68107672 C T CSPP1 Silent p.D1170D 0.12 TCGA-44-5644-01 8 70540099 70540099 A C SULF1 Missense_Mutation p.Q680H 0.59 tolerated(0.55) benign(0.436) TCGA-44-5644-01 8 70744686 70744686 C A SLCO5A1 Missense_Mutation p.G75C 0.15 tolerated_low_confidence(0.11) benign(0.01) TCGA-44-5644-01 8 71071833 71071833 C A NCOA2 Missense_Mutation p.G344V 0.24 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 8 71556426 71556426 C G LACTB2 Missense_Mutation p.E156Q 0.11 deleterious(0.02) possibly_damaging(0.728) TCGA-44-5644-01 8 72967693 72967693 T A TRPA1 Nonsense_Mutation p.K503* 0.21 TCGA-44-5644-01 8 73849053 73849053 C T KCNB2 Missense_Mutation p.S488L 0.08 deleterious(0) probably_damaging(0.975) TCGA-44-5644-01 8 75756325 75756325 G T PI15 Missense_Mutation p.R128L 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-44-5644-01 8 77618174 77618174 G A ZFHX4 Silent p.K617K 0.21 TCGA-44-5644-01 8 77761810 77761810 C T ZFHX4 Silent p.V1236V 0.10 TCGA-44-5644-01 8 77763592 77763592 G T ZFHX4 Missense_Mutation p.D1479Y 0.72 benign(0.116) TCGA-44-5644-01 8 77767133 77767133 G T ZFHX4 Missense_Mutation p.R2659L 0.18 probably_damaging(0.986) TCGA-44-5644-01 8 77767432 77767432 A G ZFHX4 Missense_Mutation p.T2759A 0.24 probably_damaging(0.979) TCGA-44-5644-01 8 77776298 77776298 C A ZFHX4 Missense_Mutation p.L3450I 0.24 probably_damaging(0.979) TCGA-44-5644-01 8 80831369 80831369 C A MRPS28 Missense_Mutation p.G137V 0.73 deleterious(0) probably_damaging(0.993) TCGA-44-5644-01 8 87229998 87229998 C A SLC7A13 Missense_Mutation p.A294S 0.23 tolerated(0.41) benign(0.028) TCGA-44-5644-01 8 88885536 88885536 C AA DCAF4L2 Frame_Shift_Ins p.G222Lfs*3 0.31 TCGA-44-5644-01 8 89053572 89053572 C A MMP16 3'UTR 0.26 TCGA-44-5644-01 8 92972709 92972709 A T RUNX1T1 Missense_Mutation p.C537S 0.10 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 8 99135611 99135611 C T POP1 Nonsense_Mutation p.Q16* 0.09 TCGA-44-5644-01 8 99170455 99170455 G T POP1 Missense_Mutation p.A1011S 0.21 tolerated(0.13) benign(0.233) TCGA-44-5644-01 9 100194369 100194369 C A TDRD7 Missense_Mutation p.P138T 0.34 tolerated(0.17) benign(0.282) TCGA-44-5644-01 9 104357254 104357254 G T PPP3R2 5'UTR 0.82 TCGA-44-5644-01 9 117020860 117020860 G T COL27A1 Missense_Mutation p.A1061S 0.68 unknown(0) TCGA-44-5644-01 9 119568059 119568059 A C ASTN2 Missense_Mutation p.C699G 0.76 deleterious(0) unknown(0) TCGA-44-5644-01 9 121971074 121971074 G T BRINP1 Silent p.I356I 0.65 TCGA-44-5644-01 9 125621336 125621336 C A RC3H2 Missense_Mutation p.C632F 0.31 deleterious(0.02) probably_damaging(0.982) TCGA-44-5644-01 9 126164062 126164062 C - DENND1A Intron 0.44 TCGA-44-5644-01 9 133914606 133914606 G T LAMC3 Silent p.G418G 0.74 TCGA-44-5644-01 9 133942513 133942513 C A LAMC3 Silent p.T838T 0.79 TCGA-44-5644-01 9 134371220 134371220 A G PRRC2B Missense_Mutation p.I2217V 0.71 deleterious(0.03) benign(0.014) TCGA-44-5644-01 9 135277662 135277662 C A TTF1 Missense_Mutation p.A183S 0.71 tolerated_low_confidence(0.15) possibly_damaging(0.739) TCGA-44-5644-01 9 137704345 137704345 G T COL5A1 Missense_Mutation p.Q1247H 0.66 unknown(0) TCGA-44-5644-01 9 138380046 138380046 G T PPP1R26 3'UTR 0.63 TCGA-44-5644-01 9 139566832 139566832 G C EGFL7 3'UTR 0.78 TCGA-44-5644-01 9 28863632 28863632 T A MIR876 RNA 0.49 TCGA-44-5644-01 9 32430486 32430486 G A ACO1 Missense_Mutation p.R547Q 0.27 deleterious(0.03) benign(0.425) TCGA-44-5644-01 9 34635564 34635565 - A SIGMAR1 3'UTR 0.62 TCGA-44-5644-01 9 34976209 34976209 C A KIAA1045 Silent p.R209R 0.51 TCGA-44-5644-01 9 34993258 34993258 G T DNAJB5 Missense_Mutation p.G124W 0.32 deleterious(0) probably_damaging(0.998) TCGA-44-5644-01 9 35074939 35074939 C A FANCG Missense_Mutation p.V541L 0.20 tolerated(1) benign(0.04) TCGA-44-5644-01 9 35403172 35403172 G T UNC13B Missense_Mutation p.V1416L 0.53 tolerated(0.14) probably_damaging(0.992) TCGA-44-5644-01 9 36882061 36882061 G T PAX5 Missense_Mutation p.H318N 0.34 deleterious(0.02) possibly_damaging(0.589) TCGA-44-5644-01 9 36882063 36882063 G T PAX5 Missense_Mutation p.P317Q 0.31 deleterious(0) probably_damaging(0.988) TCGA-44-5644-01 9 37424918 37424918 G T GRHPR Missense_Mutation p.G54C 0.33 deleterious(0) probably_damaging(1) TCGA-44-5644-01 9 40702868 40702868 C A SPATA31A3 Silent p.T175T 0.35 TCGA-44-5644-01 9 5689958 5689958 G T KIAA1432 Splice_Site p.X85_splice 0.71 TCGA-44-5644-01 9 6604785 6604785 C T GLDC Splice_Site p.X288_splice 0.46 TCGA-44-5644-01 9 75545838 75545838 T C ALDH1A1 Missense_Mutation p.Y90C 0.85 tolerated(0.14) benign(0.006) TCGA-44-5644-01 9 79324793 79324793 G C PRUNE2 Silent p.A799A 0.75 TCGA-44-5644-01 9 87636484 87636484 C T NTRK2 3'UTR 0.25 TCGA-44-5644-01 9 90502201 90502201 C A SPATA31E1 Silent p.P933P 0.65 TCGA-44-5644-01 9 90502661 90502661 C - SPATA31E1 Frame_Shift_Del p.P1087Qfs*6 0.31 TCGA-44-5644-01 X 102528906 102528906 C A TCEAL5 Missense_Mutation p.G196C 0.71 deleterious(0.03) probably_damaging(0.986) TCGA-44-5644-01 X 111155752 111155752 G T TRPC5 Missense_Mutation p.L223M 0.28 deleterious(0) probably_damaging(1) TCGA-44-5644-01 X 118220680 118220680 A T KIAA1210 Missense_Mutation p.S1505T 0.68 deleterious(0.02) benign(0.051) TCGA-44-5644-01 X 119666391 119666391 C T CUL4B Silent p.L793L 0.68 TCGA-44-5644-01 X 125686543 125686543 C A DCAF12L1 Nonsense_Mutation p.E17* 0.74 TCGA-44-5644-01 X 12722507 12722507 C G FRMPD4 Missense_Mutation p.P367R 0.47 deleterious(0) probably_damaging(1) TCGA-44-5644-01 X 130217883 130217883 T G ARHGAP36 Missense_Mutation p.F165L 0.73 tolerated(0.5) benign(0.007) TCGA-44-5644-01 X 134856826 134856826 C A CT45A1 3'UTR 0.19 TCGA-44-5644-01 X 136649221 136649221 G T ZIC3 Missense_Mutation p.S124I 0.75 tolerated(0.18) benign(0.039) TCGA-44-5644-01 X 140994417 140994417 G C MAGEC1 Missense_Mutation p.Q409H 0.53 tolerated_low_confidence(0.05) benign(0.216) TCGA-44-5644-01 X 151393252 151393252 G A GABRA3 Missense_Mutation p.P206L 0.26 deleterious(0) probably_damaging(0.964) TCGA-44-5644-01 X 152083306 152083306 G A ZNF185 Missense_Mutation p.M29I 0.60 deleterious(0) possibly_damaging(0.58) TCGA-44-5644-01 X 152083700 152083700 G T ZNF185 Silent p.R59R 0.39 TCGA-44-5644-01 X 153187084 153187084 C - ARHGAP4 Frame_Shift_Del p.S83Afs*38 0.44 TCGA-44-5644-01 X 153688605 153688605 G T PLXNA3 Missense_Mutation p.V28L 0.79 tolerated(0.39) benign(0.039) TCGA-44-5644-01 X 18323337 18323337 T C SCML2 Splice_Site p.X163_splice 0.67 TCGA-44-5644-01 X 22291375 22291375 A T ZNF645 Silent p.G89G 0.61 TCGA-44-5644-01 X 24228809 24228809 C T ZFX Silent p.C578C 0.73 TCGA-44-5644-01 X 26212158 26212158 G C MAGEB6 Missense_Mutation p.Q65H 0.72 deleterious(0.03) probably_damaging(0.992) TCGA-44-5644-01 X 30322722 30322722 G T NR0B1 Missense_Mutation p.L463M 0.69 tolerated(0.05) probably_damaging(0.925) TCGA-44-5644-01 X 31838176 31838176 C A DMD Nonsense_Mutation p.E2409* 0.82 TCGA-44-5644-01 X 3235641 3235641 G T MXRA5 Silent p.A2027A 0.59 TCGA-44-5644-01 X 37028078 37028078 C A FAM47C Missense_Mutation p.S532Y 0.84 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-44-5644-01 X 38262932 38262932 T A OTC Missense_Mutation p.L201Q 0.87 deleterious(0) probably_damaging(0.994) TCGA-44-5644-01 X 54783842 54783842 T C ITIH6 Missense_Mutation p.R889G 0.80 deleterious(0.01) benign(0.039) TCGA-44-5644-01 X 57337123 57337123 G T FAAH2 Missense_Mutation p.G125W 0.70 deleterious(0) probably_damaging(1) TCGA-44-5644-01 X 69282977 69282977 C T OTUD6A Silent p.D201D 0.39 TCGA-44-5644-01 X 73071574 73071574 C A XIST RNA 0.76 TCGA-44-5644-01 X 73961650 73961650 A C KIAA2022 Missense_Mutation p.S914R 0.42 tolerated(0.06) benign(0.093) TCGA-44-5644-01 X 79960239 79960239 C A BRWD3 Missense_Mutation p.D887Y 0.76 deleterious(0) possibly_damaging(0.615) TCGA-44-5644-01 X 83730299 83730299 T A HDX Missense_Mutation p.Q36L 0.36 deleterious(0) probably_damaging(0.991) TCGA-44-5644-01 X 9000422 9000422 C A FAM9B Missense_Mutation p.G37W 0.60 deleterious(0) probably_damaging(0.999) TCGA-44-5644-01 X 90690916 90690916 G T PABPC5 Missense_Mutation p.D114Y 0.37 deleterious(0) probably_damaging(0.997) TCGA-44-5645-01 10 48389514 48389514 A G RBP3 Missense_Mutation p.V455A 0.36 tolerated(0.53) benign(0.099) TCGA-44-5645-01 11 49178267 49178267 A G FOLH1 Splice_Site p.X541_splice 0.15 TCGA-44-5645-01 11 62298187 62298187 G C AHNAK Silent p.P1234P 0.21 TCGA-44-5645-01 11 65088480 65088480 C A CDC42EP2 Missense_Mutation p.F37L 0.24 deleterious(0.05) probably_damaging(0.983) TCGA-44-5645-01 11 88780796 88780796 T C GRM5 Missense_Mutation p.D82G 0.29 deleterious(0) possibly_damaging(0.798) TCGA-44-5645-01 15 50211114 50211114 G A ATP8B4 Nonsense_Mutation p.Q653* 0.24 TCGA-44-5645-01 15 85345690 85345690 C T ZNF592 3'UTR 0.36 TCGA-44-5645-01 16 67298944 67298944 A C SLC9A5 Missense_Mutation p.K672T 0.09 tolerated(0.07) benign(0.006) TCGA-44-5645-01 16 70995956 70995956 G C HYDIN Silent p.S1958S 0.32 TCGA-44-5645-01 16 9858195 9858195 G A GRIN2A Missense_Mutation p.T1069M 0.22 tolerated_low_confidence(0.07) possibly_damaging(0.718) TCGA-44-5645-01 17 7573967 7573967 G A TP53 Nonsense_Mutation p.Q354* 0.28 TCGA-44-5645-01 18 20814573 20814573 G A CABLES1 Missense_Mutation p.D364N 0.35 deleterious(0.02) probably_damaging(0.995) TCGA-44-5645-01 19 15996864 15996865 - T CYP4F2 Splice_Site p.X329_splice 0.30 TCGA-44-5645-01 19 16284278 16284278 G T CIB3 Missense_Mutation p.N3K 0.29 deleterious(0.02) benign(0.069) TCGA-44-5645-01 19 44012951 44012951 T A ETHE1 Missense_Mutation p.I191F 0.42 deleterious(0) possibly_damaging(0.666) TCGA-44-5645-01 19 50167985 50167985 A G IRF3 Silent p.P37P 0.24 TCGA-44-5645-01 1 144918885 144918885 T C PDE4DIP Missense_Mutation p.Q434R 0.23 tolerated(0.14) probably_damaging(0.992) TCGA-44-5645-01 1 36383924 36383924 T C AGO1 Missense_Mutation p.I722T 0.16 tolerated(0.6) benign(0.314) TCGA-44-5645-01 1 38260316 38260316 C G MANEAL Silent p.S154S 0.23 TCGA-44-5645-01 1 62455859 62455859 T A INADL Nonsense_Mutation p.Y1230* 0.27 TCGA-44-5645-01 1 984830 984830 G A AGRN Missense_Mutation p.V1505M 0.18 tolerated(0.16) benign(0.107) TCGA-44-5645-01 20 29992817 29992817 A G DEFB121 Missense_Mutation p.C44R 0.17 deleterious(0) probably_damaging(0.951) TCGA-44-5645-01 22 42415801 42415801 C T WBP2NL Missense_Mutation p.P103S 0.28 deleterious(0.04) possibly_damaging(0.906) TCGA-44-5645-01 22 43564118 43564118 C T TTLL12 Missense_Mutation p.D611N 0.21 deleterious(0) probably_damaging(0.931) TCGA-44-5645-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.29 tolerated(0.11) possibly_damaging(0.529) TCGA-44-5645-01 3 38592973 38592973 T A SCN5A Silent p.I1630I 0.27 TCGA-44-5645-01 3 89462377 89462377 G T EPHA3 Missense_Mutation p.D617Y 0.25 deleterious(0) possibly_damaging(0.521) TCGA-44-5645-01 3 9780966 9780966 A G BRPF1 Missense_Mutation p.M295V 0.40 tolerated(0.07) probably_damaging(0.92) TCGA-44-5645-01 4 114530323 114530323 T C CAMK2D Missense_Mutation p.Y87C 0.23 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-44-5645-01 4 38830532 38830532 G A TLR6 Missense_Mutation p.T188I 0.29 tolerated(0.14) benign(0.002) TCGA-44-5645-01 4 56830457 56830457 A C CEP135 Silent p.R239R 0.27 TCGA-44-5645-01 4 99982307 99982307 G A METAP1 Missense_Mutation p.G334R 0.29 tolerated(0.11) probably_damaging(0.967) TCGA-44-5645-01 5 109091091 109091091 A G MAN2A1 Missense_Mutation p.T257A 0.24 tolerated(0.09) benign(0.008) TCGA-44-5645-01 5 156787321 156787321 C T CYFIP2 Missense_Mutation p.T924I 0.16 deleterious(0.03) benign(0.209) TCGA-44-5645-01 5 167642247 167642247 G T TENM2 Missense_Mutation p.A1350S 0.17 deleterious(0.01) benign(0.174) TCGA-44-5645-01 5 54701406 54701406 G T SKIV2L2 Nonsense_Mutation p.E879* 0.18 TCGA-44-5645-01 7 19184591 19184591 G A FERD3L Missense_Mutation p.A132V 0.10 deleterious(0) probably_damaging(0.968) TCGA-44-5645-01 7 44806175 44806175 G A ZMIZ2 Silent p.T856T 0.23 TCGA-44-5645-01 7 55248998 55248999 - TGGCCAGCG EGFR In_Frame_Ins p.A767_V769dup 0.25 TCGA-44-5645-01 9 116356199 116356199 C T RGS3 Intron 0.23 TCGA-44-5645-01 9 19786259 19786259 G A SLC24A2 Silent p.N202N 0.23 TCGA-44-5645-01 9 21971077 21971077 A G CDKN2A Missense_Mutation p.L94P 0.22 deleterious(0) probably_damaging(0.992) TCGA-44-5645-01 9 21971186 21971186 G A CDKN2A Nonsense_Mutation p.R58* 0.39 TCGA-44-5645-01 9 97522766 97522766 C T C9orf3 Missense_Mutation p.A234V 0.24 tolerated(1) benign(0.006) TCGA-44-5645-01 X 153553709 153553709 C T TKTL1 Nonsense_Mutation p.R448* 0.17 TCGA-44-5645-01 X 89177431 89177431 G A TGIF2LX Missense_Mutation p.R116H 0.20 tolerated(0.06) benign(0) TCGA-44-6144-01 10 134627665 134627665 T A TTC40 Missense_Mutation p.H2460L 0.21 tolerated(0.1) benign(0.025) TCGA-44-6144-01 10 16870805 16870805 C G CUBN Missense_Mutation p.G3588A 0.35 tolerated(1) benign(0.002) TCGA-44-6144-01 10 50285321 50285321 G C VSTM4 Missense_Mutation p.L193V 0.37 deleterious(0.03) benign(0.018) TCGA-44-6144-01 10 69948775 69948775 G T MYPN Silent p.T939T 0.29 TCGA-44-6144-01 10 75552466 75552466 A T ZSWIM8 Silent p.G723G 0.36 TCGA-44-6144-01 10 78844415 78844415 C T KCNMA1 Silent p.E501E 0.28 TCGA-44-6144-01 11 102482490 102482490 A G MMP20 Silent p.N173N 0.31 TCGA-44-6144-01 11 103908544 103908544 C A DDI1 Missense_Mutation p.L332I 0.31 deleterious(0) probably_damaging(0.997) TCGA-44-6144-01 11 114568806 114568806 G A NXPE2 Missense_Mutation p.G58R 0.29 tolerated(0.06) benign(0.002) TCGA-44-6144-01 11 123900870 123900870 C T OR10G8 Missense_Mutation p.P181S 0.18 deleterious(0.01) probably_damaging(0.973) TCGA-44-6144-01 11 20629074 20629074 C A SLC6A5 Nonsense_Mutation p.Y287* 0.28 TCGA-44-6144-01 11 2185528 2185528 G T TH Missense_Mutation p.R508S 0.22 tolerated(0.83) benign(0.031) TCGA-44-6144-01 11 26743035 26743035 C A SLC5A12 Missense_Mutation p.R76L 0.17 tolerated(0.08) benign(0.105) TCGA-44-6144-01 11 3114834 3114834 C T OSBPL5 Silent p.P623P 0.22 TCGA-44-6144-01 11 45277246 45277246 G T SYT13 Missense_Mutation p.T127K 0.24 deleterious(0.02) benign(0.146) TCGA-44-6144-01 11 47204066 47204066 G A PACSIN3 Silent p.H33H 0.42 TCGA-44-6144-01 11 55579752 55579752 T A OR5L1 Silent p.A270A 0.13 TCGA-44-6144-01 11 55595317 55595317 G A OR5L2 Missense_Mutation p.S208N 0.18 deleterious(0) benign(0.331) TCGA-44-6144-01 11 55703175 55703175 A T OR5I1 Missense_Mutation p.S234R 0.11 deleterious(0.02) benign(0.004) TCGA-44-6144-01 11 55860877 55860877 C A OR8I2 Missense_Mutation p.L32I 0.18 deleterious(0) probably_damaging(0.994) TCGA-44-6144-01 11 55861048 55861048 C T OR8I2 Missense_Mutation p.R89W 0.13 deleterious(0) benign(0.2) TCGA-44-6144-01 11 55861049 55861049 G T OR8I2 Missense_Mutation p.R89L 0.13 tolerated(0.07) benign(0) TCGA-44-6144-01 11 55904455 55904455 G A OR8J3 Missense_Mutation p.A247V 0.13 tolerated(0.95) benign(0.11) TCGA-44-6144-01 11 57971562 57971562 G T OR1S2 Missense_Mutation p.S31Y 0.36 deleterious(0) benign(0.398) TCGA-44-6144-01 11 59190311 59190311 G C OR5A2 Missense_Mutation p.T39R 0.40 deleterious(0) probably_damaging(0.992) TCGA-44-6144-01 11 66099662 66099662 C A RIN1 3'UTR 0.11 TCGA-44-6144-01 11 67013473 67013473 A T KDM2A Silent p.S617S 0.23 TCGA-44-6144-01 11 83183791 83183791 C A DLG2 Nonsense_Mutation p.E775* 0.13 TCGA-44-6144-01 11 88911127 88911127 C A TYR Silent p.L2L 0.10 TCGA-44-6144-01 11 88911128 88911128 C A TYR Missense_Mutation p.L3M 0.12 deleterious(0.03) possibly_damaging(0.878) TCGA-44-6144-01 11 9228271 9228271 T A DENND5A Silent p.R80R 0.22 TCGA-44-6144-01 12 108603977 108603977 G C WSCD2 Missense_Mutation p.A193P 0.07 tolerated(0.15) possibly_damaging(0.46) TCGA-44-6144-01 12 117715775 117715775 G A NOS1 Silent p.I551I 0.29 TCGA-44-6144-01 12 121125332 121125332 G T MLEC Missense_Mutation p.R78L 0.23 tolerated(0.43) benign(0.005) TCGA-44-6144-01 12 124812058 124812058 G A NCOR2 Silent p.L2360L 0.31 TCGA-44-6144-01 12 124812059 124812059 A G NCOR2 Missense_Mutation p.L2360P 0.31 probably_damaging(1) TCGA-44-6144-01 12 21807503 21807503 C A LDHB Missense_Mutation p.A35S 0.21 deleterious(0.02) benign(0.084) TCGA-44-6144-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.34 deleterious(0.04) probably_damaging(0.993) TCGA-44-6144-01 12 25671726 25671726 G T IFLTD1 Intron 0.19 TCGA-44-6144-01 12 27835625 27835625 T G PPFIBP1 Missense_Mutation p.Y752D 0.20 deleterious(0) probably_damaging(0.994) TCGA-44-6144-01 12 30888023 30888023 C A CAPRIN2 Nonsense_Mutation p.E230* 0.25 TCGA-44-6144-01 12 3701463 3701463 G A PRMT8 Missense_Mutation p.R349Q 0.28 tolerated(0.24) benign(0.004) TCGA-44-6144-01 12 54803130 54803130 C A ITGA5 Missense_Mutation p.A157S 0.17 deleterious(0.01) possibly_damaging(0.888) TCGA-44-6144-01 12 6833886 6833886 G A COPS7A Missense_Mutation p.A22T 0.15 tolerated(0.32) benign(0.215) TCGA-44-6144-01 12 68595652 68595652 A T IL26 Silent p.I163I 0.18 TCGA-44-6144-01 12 77419607 77419607 C A E2F7 Missense_Mutation p.G766C 0.25 deleterious(0.02) possibly_damaging(0.503) TCGA-44-6144-01 12 77427701 77427701 C A E2F7 Missense_Mutation p.Q415H 0.35 tolerated(0.05) benign(0.009) TCGA-44-6144-01 12 9840645 9840645 A G CLEC2D Missense_Mutation p.D107G 0.28 tolerated(0.44) benign(0.01) TCGA-44-6144-01 13 25264846 25264846 A C ATP12A Silent p.T262T 0.15 TCGA-44-6144-01 13 25353824 25353824 A G RNF17 Missense_Mutation p.E150G 0.29 deleterious(0.03) probably_damaging(0.932) TCGA-44-6144-01 13 28239978 28239978 A T POLR1D Missense_Mutation p.H86L 0.29 deleterious(0.04) benign(0.124) TCGA-44-6144-01 13 38266263 38266263 G C TRPC4 Missense_Mutation p.H369Q 0.11 deleterious(0.03) probably_damaging(0.994) TCGA-44-6144-01 13 43528100 43528100 T C EPSTI1 Missense_Mutation p.R183G 0.25 tolerated(0.11) possibly_damaging(0.894) TCGA-44-6144-01 13 52728041 52728041 G T NEK3 Missense_Mutation p.P100T 0.27 tolerated(0.17) probably_damaging(0.982) TCGA-44-6144-01 13 70681367 70681367 A G KLHL1 Silent p.S155S 0.27 TCGA-44-6144-01 13 86369930 86369930 T C SLITRK6 Silent p.P238P 0.17 TCGA-44-6144-01 13 97485263 97485263 G T HS6ST3 Missense_Mutation p.E409D 0.20 tolerated(0.66) benign(0.137) TCGA-44-6144-01 14 106967542 106967542 T C IGHV1-46 5'UTR 0.30 TCGA-44-6144-01 14 31169464 31169464 G T SCFD1 Missense_Mutation p.E470D 0.22 tolerated(0.85) benign(0.013) TCGA-44-6144-01 14 31637595 31637595 T C HECTD1 Missense_Mutation p.K511E 0.26 tolerated(0.07) possibly_damaging(0.55) TCGA-44-6144-01 14 31637636 31637636 T C HECTD1 Missense_Mutation p.K497R 0.22 tolerated(0.15) benign(0.19) TCGA-44-6144-01 14 54416867 54416867 T A BMP4 Missense_Mutation p.K370N 0.17 deleterious(0) benign(0.432) TCGA-44-6144-01 14 55455817 55455817 C A WDHD1 Missense_Mutation p.L485F 0.27 tolerated(0.13) benign(0.016) TCGA-44-6144-01 14 67675140 67675140 C A FAM71D Missense_Mutation p.S378R 0.15 deleterious_low_confidence(0) benign(0.115) TCGA-44-6144-01 14 96730467 96730467 C A BDKRB1 Silent p.R150R 0.24 TCGA-44-6144-01 15 101170058 101170058 C T ASB7 Missense_Mutation p.R210C 0.06 deleterious(0.01) benign(0.251) TCGA-44-6144-01 15 24924390 24924390 C A NPAP1 Missense_Mutation p.H1126N 0.28 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-44-6144-01 15 25312955 25312955 A T SNORD116-7 RNA 0.33 TCGA-44-6144-01 15 25615807 25615807 G A UBE3A Missense_Mutation p.T508I 0.15 deleterious(0) benign(0.108) TCGA-44-6144-01 15 48512830 48512830 G C SLC12A1 Splice_Site p.X141_splice 0.15 TCGA-44-6144-01 15 48703402 48703402 C T FBN1 Missense_Mutation p.D2801N 0.16 benign(0) TCGA-44-6144-01 15 48800778 48800778 C A FBN1 Splice_Site p.X613_splice 0.15 TCGA-44-6144-01 15 52246769 52246769 C G LEO1 Missense_Mutation p.E417Q 0.21 deleterious(0.01) possibly_damaging(0.901) TCGA-44-6144-01 15 88420120 88420120 G A NTRK3 3'UTR 0.19 TCGA-44-6144-01 15 97327389 97327389 G A SPATA8 Silent p.S32S 0.12 TCGA-44-6144-01 16 2338148 2338148 G A ABCA3 Silent p.G961G 0.41 TCGA-44-6144-01 16 24046816 24046816 C T PRKCB Silent p.R159R 0.34 TCGA-44-6144-01 16 26147509 26147509 G T HS3ST4 Missense_Mutation p.L437F 0.35 tolerated(0.24) benign(0.054) TCGA-44-6144-01 16 27460086 27460086 A T IL21R Missense_Mutation p.R367W 0.15 deleterious(0) possibly_damaging(0.893) TCGA-44-6144-01 16 28943816 28943816 A T CD19 Missense_Mutation p.I80F 0.33 deleterious(0) benign(0.102) TCGA-44-6144-01 16 29906600 29906600 C T SEZ6L2 Missense_Mutation p.G278D 0.14 tolerated(0.12) benign(0.407) TCGA-44-6144-01 16 3304362 3304362 C T MEFV Missense_Mutation p.G236R 0.28 tolerated(0.09) benign(0.08) TCGA-44-6144-01 16 48130791 48130791 C T ABCC12 Missense_Mutation p.A1021T 0.15 deleterious(0.02) benign(0.19) TCGA-44-6144-01 16 700343 700343 G T WDR90 Missense_Mutation p.E123D 0.35 tolerated(0.23) benign(0.007) TCGA-44-6144-01 16 74525010 74525010 C A GLG1 Silent p.G446G 0.10 TCGA-44-6144-01 16 77918564 77918564 G C VAT1L Silent p.A314A 0.31 TCGA-44-6144-01 17 11806036 11806036 G T DNAH9 Missense_Mutation p.V3803L 0.27 benign(0.005) TCGA-44-6144-01 17 29546053 29546053 G C NF1 Missense_Mutation p.G520R 0.09 tolerated(0.17) benign(0.03) TCGA-44-6144-01 17 3101509 3101509 C T OR1A2 Silent p.L233L 0.39 TCGA-44-6144-01 17 55917173 55917173 C A MRPS23 Missense_Mutation p.D182Y 0.29 deleterious(0.01) benign(0.352) TCGA-44-6144-01 17 64092444 64092444 C A CEP112 Missense_Mutation p.M231I 0.24 tolerated(0.34) benign(0.002) TCGA-44-6144-01 17 68171820 68171820 G T KCNJ2 Missense_Mutation p.V214L 0.28 deleterious(0.04) probably_damaging(0.997) TCGA-44-6144-01 17 72540834 72540834 G T CD300C Missense_Mutation p.A105E 0.25 tolerated(0.17) possibly_damaging(0.719) TCGA-44-6144-01 17 72540836 72540836 G T CD300C Missense_Mutation p.D104E 0.26 deleterious(0) probably_damaging(0.999) TCGA-44-6144-01 17 7574017 7574017 C A TP53 Missense_Mutation p.R337L 0.45 deleterious(0.01) probably_damaging(0.914) TCGA-44-6144-01 17 76851735 76851735 C T TIMP2 3'UTR 0.18 TCGA-44-6144-01 17 78269454 78269454 G A RNF213 Missense_Mutation p.S618N 0.14 benign(0.012) TCGA-44-6144-01 17 9086271 9086271 G T NTN1 Missense_Mutation p.V466L 0.30 tolerated(0.4) benign(0.003) TCGA-44-6144-01 18 42531409 42531409 G T SETBP1 Missense_Mutation p.A702S 0.20 tolerated(0.34) benign(0.124) TCGA-44-6144-01 18 71797821 71797821 C T FBXO15 Silent p.E135E 0.36 TCGA-44-6144-01 19 1218447 1218447 A T STK11 Nonsense_Mutation p.K108* 0.43 TCGA-44-6144-01 19 14083892 14083892 G A RFX1 Missense_Mutation p.T326M 0.47 deleterious(0) possibly_damaging(0.863) TCGA-44-6144-01 19 16513280 16513280 G A EPS15L1 Missense_Mutation p.S548F 0.12 tolerated(0.07) probably_damaging(0.944) TCGA-44-6144-01 19 22363072 22363072 C T ZNF676 Missense_Mutation p.G483S 0.33 deleterious(0.04) benign(0.361) TCGA-44-6144-01 19 23927132 23927132 G A ZNF681 Missense_Mutation p.S407L 0.19 deleterious(0.01) possibly_damaging(0.587) TCGA-44-6144-01 19 41231331 41231331 T G ITPKC Silent p.L414L 0.08 TCGA-44-6144-01 19 44681834 44681834 G T ZNF226 3'UTR 0.28 TCGA-44-6144-01 19 45477703 45477703 A T CLPTM1 Missense_Mutation p.H106L 0.16 tolerated(0.07) benign(0.021) TCGA-44-6144-01 19 45769531 45769531 G A MARK4 Missense_Mutation p.D181N 0.09 deleterious(0) possibly_damaging(0.86) TCGA-44-6144-01 19 48547203 48547203 G A CABP5 5'UTR 0.17 TCGA-44-6144-01 19 48876782 48876782 C T SYNGR4 Silent p.S34S 0.13 TCGA-44-6144-01 19 51874940 51874940 G C NKG7 3'UTR 0.16 TCGA-44-6144-01 19 52272883 52272883 C A FPR2 Silent p.A324A 0.11 TCGA-44-6144-01 19 53352410 53352410 G C ZNF468 Missense_Mutation p.C24W 0.27 deleterious(0) probably_damaging(0.963) TCGA-44-6144-01 19 54417828 54417828 G T CACNG7 Nonsense_Mutation p.E91* 0.31 TCGA-44-6144-01 19 57646819 57646819 G T ZIM3 Missense_Mutation p.Q296K 0.14 tolerated(0.91) benign(0.117) TCGA-44-6144-01 19 57703223 57703223 G T ZNF264 5'UTR 0.50 TCGA-44-6144-01 19 58018365 58018365 G T ZNF773 Missense_Mutation p.R301M 0.33 deleterious(0) probably_damaging(0.983) TCGA-44-6144-01 19 58018366 58018366 G T ZNF773 Missense_Mutation p.R301S 0.32 tolerated(0.06) possibly_damaging(0.811) TCGA-44-6144-01 19 6312483 6312483 C A ACER1 Missense_Mutation p.G41W 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-44-6144-01 19 8993385 8993385 G A MUC16 Missense_Mutation p.L13902F 0.31 probably_damaging(0.997) TCGA-44-6144-01 1 101196759 101196759 C A VCAM1 Missense_Mutation p.P404T 0.11 deleterious(0.01) possibly_damaging(0.457) TCGA-44-6144-01 1 108185290 108185290 C A VAV3 Missense_Mutation p.G622V 0.16 deleterious(0) probably_damaging(0.956) TCGA-44-6144-01 1 114682356 114682356 G T SYT6 Silent p.A46A 0.15 TCGA-44-6144-01 1 144951923 144951923 G T PDE4DIP Intron 0.12 TCGA-44-6144-01 1 149936267 149936267 C A OTUD7B Missense_Mutation p.W204C 0.24 deleterious(0) probably_damaging(1) TCGA-44-6144-01 1 152128887 152128887 G T RPTN Silent p.R230R 0.18 TCGA-44-6144-01 1 155011919 155011919 C A DCST1 Silent p.R101R 0.18 TCGA-44-6144-01 1 155011920 155011920 T G DCST1 Missense_Mutation p.C102G 0.18 deleterious(0) probably_damaging(0.996) TCGA-44-6144-01 1 156237303 156237303 C G SMG5 Missense_Mutation p.V359L 0.10 tolerated(0.09) benign(0.015) TCGA-44-6144-01 1 156555750 156555750 C T TTC24 Missense_Mutation p.P527L 0.46 tolerated_low_confidence(0.05) benign(0.011) TCGA-44-6144-01 1 156643273 156643273 C A NES Missense_Mutation p.G319C 0.13 deleterious(0.03) possibly_damaging(0.885) TCGA-44-6144-01 1 157556159 157556159 C T FCRL4 Missense_Mutation p.V312M 0.11 tolerated(0.06) benign(0.286) TCGA-44-6144-01 1 157737280 157737280 G A FCRL2 Silent p.V301V 0.15 TCGA-44-6144-01 1 160163610 160163610 T C CASQ1 Silent p.A146A 0.20 TCGA-44-6144-01 1 161043035 161043035 T A PVRL4 Missense_Mutation p.N430Y 0.14 deleterious(0.01) probably_damaging(0.969) TCGA-44-6144-01 1 168055036 168055036 T C GPR161 Splice_Site p.X462_splice 0.55 TCGA-44-6144-01 1 171178146 171178146 C T FMO2 3'UTR 0.11 TCGA-44-6144-01 1 186276415 186276415 C A PRG4 Missense_Mutation p.P522T 0.12 unknown(0) TCGA-44-6144-01 1 197071597 197071597 T G ASPM Missense_Mutation p.M2262L 0.06 tolerated(0.06) benign(0.045) TCGA-44-6144-01 1 197390959 197390959 G T CRB1 Missense_Mutation p.K667N 0.11 tolerated(0.05) possibly_damaging(0.77) TCGA-44-6144-01 1 201839917 201839917 G A IPO9 Silent p.E780E 0.35 TCGA-44-6144-01 1 211487073 211487073 T A RCOR3 Missense_Mutation p.I542N 0.19 deleterious_low_confidence(0) benign(0.215) TCGA-44-6144-01 1 228402005 228402005 G T OBSCN Silent p.G463G 0.09 TCGA-44-6144-01 1 228433270 228433270 G C OBSCN Missense_Mutation p.R1305P 0.11 benign(0.405) TCGA-44-6144-01 1 231509813 231509813 C A EGLN1 Silent p.T308T 0.36 TCGA-44-6144-01 1 232650756 232650756 G A SIPA1L2 Silent p.I110I 0.15 TCGA-44-6144-01 1 237777895 237777895 A T RYR2 Nonsense_Mutation p.K1823* 0.14 TCGA-44-6144-01 1 238053782 238053782 G T ZP4 Missense_Mutation p.P52T 0.19 tolerated(0.38) benign(0.002) TCGA-44-6144-01 1 248263647 248263647 C T OR2L13 3'UTR 0.33 TCGA-44-6144-01 1 26628188 26628188 C T UBXN11 Missense_Mutation p.D33N 0.14 tolerated(0.33) benign(0.009) TCGA-44-6144-01 1 38019714 38019714 T C SNIP1 Silent p.A39A 0.25 TCGA-44-6144-01 1 39340442 39340455 GAGGTTACCTTTAG - GJA9 Frame_Shift_Del p.P439Qfs*23 0.51 TCGA-44-6144-01 1 61554015 61554015 A T NFIA Silent p.R119R 0.20 TCGA-44-6144-01 1 63128798 63128798 C A DOCK7 Silent p.T14T 0.24 TCGA-44-6144-01 20 2397970 2397970 G T TGM6 Missense_Mutation p.G477W 0.27 deleterious(0.01) possibly_damaging(0.812) TCGA-44-6144-01 20 30354472 30354472 G A TPX2 Missense_Mutation p.A115T 0.28 deleterious(0.03) benign(0.001) TCGA-44-6144-01 20 30667608 30667608 G T HCK Missense_Mutation p.A154S 0.25 tolerated(0.09) probably_damaging(0.973) TCGA-44-6144-01 20 40045961 40045961 C A CHD6 Missense_Mutation p.E2052D 0.13 tolerated(0.09) probably_damaging(0.992) TCGA-44-6144-01 20 61916199 61916199 G A ARFGAP1 Intron 0.25 TCGA-44-6144-01 20 62607069 62607069 G A SAMD10 Missense_Mutation p.R188W 0.27 deleterious(0) probably_damaging(1) TCGA-44-6144-01 20 62730176 62730176 G T OPRL1 3'UTR 0.47 TCGA-44-6144-01 21 46012170 46012170 G T KRTAP10-6 Missense_Mutation p.P66T 0.21 deleterious(0.01) unknown(0) TCGA-44-6144-01 22 39418930 39418930 A C APOBEC3D Missense_Mutation p.I41L 0.21 tolerated(1) benign(0.023) TCGA-44-6144-01 22 45278997 45278997 G C PHF21B Missense_Mutation p.P522R 0.13 deleterious_low_confidence(0.02) benign(0.021) TCGA-44-6144-01 22 46712201 46712201 C G GTSE1 Missense_Mutation p.Q442E 0.22 tolerated(0.11) possibly_damaging(0.796) TCGA-44-6144-01 22 46829346 46829346 G A CELSR1 Missense_Mutation p.P1519S 0.30 deleterious(0.04) benign(0.217) TCGA-44-6144-01 22 50662598 50662598 G T TUBGCP6 Missense_Mutation p.L748M 0.09 tolerated(0.06) probably_damaging(0.979) TCGA-44-6144-01 2 108475847 108475847 G T RGPD4 Nonsense_Mutation p.G491* 0.25 TCGA-44-6144-01 2 112786012 112786012 C G MERTK Silent p.L857L 0.33 TCGA-44-6144-01 2 135076256 135076256 C T MGAT5 Silent p.Y173Y 0.22 TCGA-44-6144-01 2 158971741 158971741 G A UPP2 Missense_Mutation p.M160I 0.16 tolerated(0.07) benign(0.168) TCGA-44-6144-01 2 165953852 165953852 G C SCN3A Missense_Mutation p.D1383E 0.25 tolerated(0.7) benign(0.002) TCGA-44-6144-01 2 166897828 166897828 G T SCN1A Silent p.I776I 0.20 TCGA-44-6144-01 2 179395870 179395870 G T TTN Missense_Mutation p.P35158T 0.19 TCGA-44-6144-01 2 191865802 191865802 T A STAT1 Missense_Mutation p.M154L 0.23 deleterious(0.02) benign(0) TCGA-44-6144-01 2 197954713 197954713 T G ANKRD44 Missense_Mutation p.N357H 0.16 tolerated(0.51) benign(0.024) TCGA-44-6144-01 2 210518007 210518007 G T MAP2 Missense_Mutation p.G38V 0.32 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-6144-01 2 211454912 211454912 C A CPS1 Missense_Mutation p.P271Q 0.31 deleterious(0) probably_damaging(1) TCGA-44-6144-01 2 211507348 211507348 G T CPS1 Nonsense_Mutation p.E1040* 0.16 TCGA-44-6144-01 2 218669163 218669163 C A TNS1 3'UTR 0.15 TCGA-44-6144-01 2 233745922 233745922 G C NGEF Missense_Mutation p.Q626E 0.30 deleterious(0.01) benign(0.422) TCGA-44-6144-01 2 234878403 234878403 T A TRPM8 Missense_Mutation p.L697Q 0.29 deleterious(0) possibly_damaging(0.603) TCGA-44-6144-01 2 242039105 242039105 A C MTERFD2 Missense_Mutation p.C76G 0.15 tolerated(0.37) benign(0.017) TCGA-44-6144-01 2 27423286 27423286 C A SLC5A6 3'UTR 0.22 TCGA-44-6144-01 2 32772983 32772983 A C BIRC6 Missense_Mutation p.T4293P 0.40 probably_damaging(0.994) TCGA-44-6144-01 2 55536362 55536362 T C CCDC88A Missense_Mutation p.K1369E 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-44-6144-01 2 56611409 56611409 G T CCDC85A Missense_Mutation p.W527C 0.28 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-44-6144-01 2 70188691 70188691 C A ASPRV1 Missense_Mutation p.G44W 0.39 tolerated_low_confidence(0.1) benign(0.013) TCGA-44-6144-01 2 75099464 75099464 T C HK2 Missense_Mutation p.M138T 0.24 deleterious(0.02) benign(0.253) TCGA-44-6144-01 2 77745899 77745899 C G LRRTM4 Missense_Mutation p.V366L 0.34 tolerated(0.53) benign(0.003) TCGA-44-6144-01 2 95541448 95541448 G C TEKT4 Missense_Mutation p.R351P 0.18 deleterious(0) probably_damaging(0.994) TCGA-44-6144-01 2 97506536 97506536 A G ANKRD23 Silent p.N138N 0.23 TCGA-44-6144-01 3 113761558 113761558 T C KIAA1407 Missense_Mutation p.K136R 0.46 tolerated(1) benign(0.012) TCGA-44-6144-01 3 39229101 39229101 T A XIRP1 Silent p.S612S 0.38 TCGA-44-6144-01 3 48462684 48462684 C G PLXNB1 Missense_Mutation p.C588S 0.32 deleterious(0) probably_damaging(0.989) TCGA-44-6144-01 3 77651490 77651490 C A ROBO2 Missense_Mutation p.T1011N 0.30 deleterious(0.04) benign(0.403) TCGA-44-6144-01 4 100478502 100478502 C A TRMT10A Missense_Mutation p.Q140H 0.17 deleterious(0) probably_damaging(0.999) TCGA-44-6144-01 4 110673626 110673626 G A CFI Missense_Mutation p.A313V 0.09 tolerated(0.15) benign(0.092) TCGA-44-6144-01 4 126372825 126372825 G T FAT4 Missense_Mutation p.G3552C 0.28 probably_damaging(1) TCGA-44-6144-01 4 154626374 154626374 A T TLR2 Missense_Mutation p.E772V 0.25 deleterious(0.02) possibly_damaging(0.519) TCGA-44-6144-01 4 164087832 164087832 G A NAF1 Silent p.F16F 0.22 TCGA-44-6144-01 4 49030646 49030646 G T CWH43 Missense_Mutation p.A423S 0.36 tolerated(0.36) benign(0.031) TCGA-44-6144-01 4 73149331 73149331 C A ADAMTS3 Missense_Mutation p.C1047F 0.28 deleterious(0) probably_damaging(0.998) TCGA-44-6144-01 5 102494993 102494993 T A PPIP5K2 Silent p.L627L 0.37 TCGA-44-6144-01 5 130799844 130799844 G A RAPGEF6 Silent p.S790S 0.40 TCGA-44-6144-01 5 137759901 137759901 G T KDM3B Silent p.V1370V 0.38 TCGA-44-6144-01 5 138463544 138463544 T A SIL1 Splice_Site 0.40 TCGA-44-6144-01 5 145493569 145493569 C A LARS 3'UTR 0.38 TCGA-44-6144-01 5 147549350 147549350 G T SPINK14 Missense_Mutation p.V19L 0.37 deleterious(0.05) benign(0.032) TCGA-44-6144-01 5 156590418 156590418 C T FAM71B Silent p.G286G 0.47 TCGA-44-6144-01 5 16451832 16451832 C A ZNF622 Missense_Mutation p.M456I 0.33 tolerated(0.09) benign(0.005) TCGA-44-6144-01 5 176314670 176314670 C A HK3 Missense_Mutation p.G461V 0.41 deleterious(0.01) possibly_damaging(0.851) TCGA-44-6144-01 5 178413537 178413537 G T GRM6 Missense_Mutation p.P573H 0.38 deleterious(0.02) possibly_damaging(0.764) TCGA-44-6144-01 5 35875776 35875776 C G IL7R Intron 0.38 TCGA-44-6144-01 5 40947905 40947905 A G C7 Missense_Mutation p.R314G 0.21 deleterious(0) benign(0.099) TCGA-44-6144-01 5 76715644 76715644 G C PDE8B Missense_Mutation p.E728Q 0.40 deleterious(0) probably_damaging(1) TCGA-44-6144-01 6 119301415 119301415 G A FAM184A Missense_Mutation p.T730M 0.13 tolerated(0.09) probably_damaging(0.954) TCGA-44-6144-01 6 131914030 131914030 C A MED23 Intron 0.27 TCGA-44-6144-01 6 134210599 134210599 G A TCF21 Missense_Mutation p.G22R 0.22 tolerated_low_confidence(0.06) benign(0.007) TCGA-44-6144-01 6 136599576 136599576 G T BCLAF1 Missense_Mutation p.S148Y 0.17 deleterious_low_confidence(0) benign(0.341) TCGA-44-6144-01 6 152730841 152730841 C G SYNE1 Missense_Mutation p.Q2078H 0.15 benign(0.429) TCGA-44-6144-01 6 152792795 152792795 C A SYNE1 Silent p.L523L 0.24 TCGA-44-6144-01 6 160464271 160464271 G - IGF2R Frame_Shift_Del p.E525Kfs*32 0.17 TCGA-44-6144-01 6 170597852 170597852 G T DLL1 Missense_Mutation p.A126D 0.24 deleterious(0) probably_damaging(0.969) TCGA-44-6144-01 6 1961104 1961104 C A GMDS Missense_Mutation p.V148L 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.6) TCGA-44-6144-01 6 26087558 26087558 A G HFE 5'UTR 0.21 TCGA-44-6144-01 6 27799270 27799270 G T HIST1H4K Silent p.G12G 0.07 TCGA-44-6144-01 6 30153924 30153924 C G TRIM26 Missense_Mutation p.G450A 0.40 deleterious(0) unknown(0) TCGA-44-6144-01 6 32138470 32138470 G T AGPAT1 Intron 0.25 TCGA-44-6144-01 6 36269736 36269736 C A PNPLA1 Missense_Mutation p.R292S 0.24 tolerated(0.4) benign(0.062) TCGA-44-6144-01 6 42612262 42612262 A G UBR2 Missense_Mutation p.I758V 0.26 deleterious(0.04) possibly_damaging(0.795) TCGA-44-6144-01 6 49806162 49806162 C T CRISP1 Missense_Mutation p.D204N 0.22 tolerated(0.57) benign(0.129) TCGA-44-6144-01 6 50786534 50786534 C T TFAP2B 5'UTR 0.36 TCGA-44-6144-01 6 55142300 55142300 G C HCRTR2 Missense_Mutation p.Q295H 0.17 deleterious(0.04) probably_damaging(0.997) TCGA-44-6144-01 6 57512615 57512615 G C PRIM2 3'UTR 0.11 TCGA-44-6144-01 6 74117809 74117809 G A DDX43 Silent p.K388K 0.19 TCGA-44-6144-01 6 75812360 75812360 G T COL12A1 Missense_Mutation p.P2790T 0.32 probably_damaging(1) TCGA-44-6144-01 6 82950159 82950159 C A IBTK Silent p.L15L 0.24 TCGA-44-6144-01 6 90642501 90642501 G A BACH2 Nonsense_Mutation p.Q718* 0.15 TCGA-44-6144-01 6 94066623 94066623 C G EPHA7 Missense_Mutation p.C379S 0.30 deleterious(0) probably_damaging(0.959) TCGA-44-6144-01 6 99282742 99282742 C G POU3F2 5'UTR 0.25 TCGA-44-6144-01 7 100549819 100549819 T A MUC3A Missense_Mutation p.F134I 0.13 tolerated(0.08) unknown(0) TCGA-44-6144-01 7 107615775 107615775 G C LAMB1 Missense_Mutation p.Q425E 0.31 deleterious(0) probably_damaging(0.987) TCGA-44-6144-01 7 114329913 114329913 A T FOXP2 Missense_Mutation p.N719Y 0.29 deleterious(0) benign(0.016) TCGA-44-6144-01 7 122768927 122768927 C T SLC13A1 Missense_Mutation p.V369I 0.22 tolerated(0.79) benign(0.009) TCGA-44-6144-01 7 123143273 123143273 G T IQUB Missense_Mutation p.T226N 0.29 deleterious(0) possibly_damaging(0.805) TCGA-44-6144-01 7 141672991 141672991 G T TAS2R38 Missense_Mutation p.H167N 0.36 tolerated(0.29) benign(0.179) TCGA-44-6144-01 7 14217692 14217692 C A DGKB Missense_Mutation p.G737V 0.21 deleterious(0) probably_damaging(0.997) TCGA-44-6144-01 7 150069234 150069234 C T REPIN1 Missense_Mutation p.R359W 0.30 deleterious(0.02) probably_damaging(1) TCGA-44-6144-01 7 21742341 21742341 G T DNAH11 Missense_Mutation p.W2072L 0.24 probably_damaging(1) TCGA-44-6144-01 7 23296665 23296665 C G GPNMB Missense_Mutation p.I174M 0.34 deleterious(0) benign(0.181) TCGA-44-6144-01 7 27182779 27182779 C T HOXA5 Missense_Mutation p.E150K 0.44 tolerated(0.19) benign(0.121) TCGA-44-6144-01 7 31890287 31890287 G A PDE1C Silent p.T333T 0.22 TCGA-44-6144-01 7 44154947 44154947 G T POLD2 Missense_Mutation p.P399Q 0.26 deleterious(0) probably_damaging(0.986) TCGA-44-6144-01 7 45011773 45011773 T G MYO1G Missense_Mutation p.N224H 0.25 deleterious(0) possibly_damaging(0.863) TCGA-44-6144-01 7 57529506 57529506 T C ZNF716 Missense_Mutation p.F447L 0.33 tolerated(0.67) benign(0) TCGA-44-6144-01 7 64168599 64168599 A T ZNF107 Silent p.A639A 0.33 TCGA-44-6144-01 7 82544816 82544816 C A PCLO Missense_Mutation p.E4162D 0.22 unknown(0) TCGA-44-6144-01 7 87160611 87160611 T A ABCB1 Missense_Mutation p.K895M 0.22 deleterious(0) probably_damaging(0.951) TCGA-44-6144-01 7 98574614 98574614 T C TRRAP Missense_Mutation p.M2760T 0.27 benign(0.334) TCGA-44-6144-01 8 113599348 113599348 C A CSMD3 Nonsense_Mutation p.G1278* 0.09 TCGA-44-6144-01 8 117671091 117671091 A T EIF3H Missense_Mutation p.Y140N 0.09 deleterious(0) probably_damaging(0.989) TCGA-44-6144-01 8 121215955 121215955 A G COL14A1 Silent p.K295K 0.07 TCGA-44-6144-01 8 124384054 124384054 C A ATAD2 Missense_Mutation p.R131L 0.23 deleterious_low_confidence(0.01) benign(0.005) TCGA-44-6144-01 8 139189617 139189617 A G FAM135B Missense_Mutation p.L359P 0.20 tolerated(0.22) benign(0.004) TCGA-44-6144-01 8 144994080 144994080 C A PLEC Silent p.L3440L 0.06 TCGA-44-6144-01 8 2944743 2944743 C T CSMD1 Silent p.A2450A 0.13 TCGA-44-6144-01 8 33371026 33371026 T C TTI2 5'UTR 0.30 TCGA-44-6144-01 8 61735118 61735118 C G CHD7 Missense_Mutation p.T1005R 0.32 probably_damaging(0.999) TCGA-44-6144-01 8 6793627 6793627 A T DEFA4 Missense_Mutation p.V70E 0.33 tolerated(1) benign(0.381) TCGA-44-6144-01 9 100693001 100693001 C A HEMGN Nonsense_Mutation p.E226* 0.03 TCGA-44-6144-01 9 124543753 124543753 G T DAB2IP Missense_Mutation p.V1081L 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-44-6144-01 9 126143842 126143842 G T DENND1A Missense_Mutation p.P967T 0.48 tolerated_low_confidence(0.13) benign(0.007) TCGA-44-6144-01 9 133942411 133942411 C A LAMC3 Silent p.P804P 0.23 TCGA-44-6144-01 9 135947049 135947049 C A CEL Silent p.S723S 0.30 TCGA-44-6144-01 9 139409124 139409124 C A NOTCH1 Missense_Mutation p.C682F 0.27 deleterious(0) probably_damaging(1) TCGA-44-6144-01 9 43628678 43628678 C A SPATA31A6 Silent p.P88P 0.25 TCGA-44-6144-01 9 74587869 74587869 G T C9orf85 3'UTR 0.27 TCGA-44-6144-01 9 91616648 91616648 G A S1PR3 Missense_Mutation p.C178Y 0.34 deleterious(0) probably_damaging(1) TCGA-44-6144-01 X 101969993 101969993 G T GPRASP2 Missense_Mutation p.A66S 0.58 tolerated(1) benign(0.001) TCGA-44-6144-01 X 102334543 102334543 A G NXF3 Silent p.D396D 0.52 TCGA-44-6144-01 X 102529026 102529026 G C TCEAL5 Missense_Mutation p.Q156E 0.61 tolerated(0.75) possibly_damaging(0.609) TCGA-44-6144-01 X 105449935 105449935 A G MUM1L1 Silent p.Q170Q 0.64 TCGA-44-6144-01 X 110653443 110653443 C T DCX Missense_Mutation p.D143N 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-44-6144-01 X 110980041 110980041 A G ALG13 Missense_Mutation p.T877A 0.51 tolerated(0.18) benign(0.001) TCGA-44-6144-01 X 21534749 21534749 G - CNKSR2 Frame_Shift_Del 0.45 TCGA-44-6145-01 10 105794442 105794442 G T COL17A1 Missense_Mutation p.L1235M 0.27 probably_damaging(0.998) TCGA-44-6145-01 10 105952008 105952008 A G WDR96 Missense_Mutation p.F499L 0.13 deleterious(0) probably_damaging(0.985) TCGA-44-6145-01 10 108448049 108448049 G T SORCS1 Missense_Mutation p.N487K 0.10 deleterious(0.04) benign(0.295) TCGA-44-6145-01 10 115383307 115383307 T C NRAP Missense_Mutation p.K813R 0.14 tolerated(0.18) benign(0.008) TCGA-44-6145-01 10 116698036 116698036 G T TRUB1 Silent p.V8V 0.09 TCGA-44-6145-01 10 127530320 127530320 A C DHX32 Missense_Mutation p.M512R 0.12 deleterious(0) probably_damaging(0.999) TCGA-44-6145-01 10 132891506 132891506 C A TCERG1L Missense_Mutation p.Q560H 0.19 deleterious(0) probably_damaging(0.999) TCGA-44-6145-01 10 134664738 134664738 C T TTC40 Silent p.L1882L 0.19 TCGA-44-6145-01 10 43608331 43608331 C A RET Missense_Mutation p.P560H 0.21 deleterious(0) probably_damaging(0.98) TCGA-44-6145-01 10 45877968 45877968 G C ALOX5 Missense_Mutation p.G63A 0.19 deleterious(0) probably_damaging(0.997) TCGA-44-6145-01 10 71392867 71392867 G T C10orf35 3'UTR 0.16 TCGA-44-6145-01 10 84745264 84745264 C A NRG3 Missense_Mutation p.T665K 0.14 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-44-6145-01 10 88681386 88681386 A G BMPR1A Missense_Mutation p.I426V 0.14 tolerated(0.21) benign(0.033) TCGA-44-6145-01 10 90768652 90768652 A T FAS Missense_Mutation p.E114V 0.14 deleterious(0) probably_damaging(1) TCGA-44-6145-01 10 93408 93408 G T TUBB8 Silent p.G308G 0.27 TCGA-44-6145-01 10 95351677 95351677 C A RBP4 3'UTR 0.29 TCGA-44-6145-01 10 97583120 97583120 A T ENTPD1 Missense_Mutation p.K60M 0.15 deleterious(0) probably_damaging(0.918) TCGA-44-6145-01 10 98778813 98778813 G T SLIT1 Missense_Mutation p.P933Q 0.15 deleterious(0) probably_damaging(0.972) TCGA-44-6145-01 10 98799743 98799743 A T SLIT1 Splice_Site p.X766_splice 0.16 TCGA-44-6145-01 10 99144970 99144970 C A RRP12 Silent p.L387L 0.16 TCGA-44-6145-01 11 1084795 1084795 G A MUC2 Missense_Mutation p.G864R 0.30 probably_damaging(1) TCGA-44-6145-01 11 111782353 111782353 C A CRYAB Silent p.L32L 0.29 TCGA-44-6145-01 11 114453728 114453728 T A NXPE4 Missense_Mutation p.N38Y 0.04 deleterious(0.04) benign(0.01) TCGA-44-6145-01 11 118498623 118498623 A T PHLDB1 Missense_Mutation p.S362C 0.28 deleterious(0) benign(0) TCGA-44-6145-01 11 121177914 121177914 A T SC5D Missense_Mutation p.Y198F 0.03 tolerated(1) benign(0.086) TCGA-44-6145-01 11 123513202 123513202 G T SCN3B Missense_Mutation p.P133T 0.29 tolerated(0.39) possibly_damaging(0.898) TCGA-44-6145-01 11 126301280 126301280 C A KIRREL3 Intron 0.23 TCGA-44-6145-01 11 17517185 17517185 C A USH1C Silent p.P862P 0.16 TCGA-44-6145-01 11 18765712 18765712 G T PTPN5 Missense_Mutation p.D44E 0.16 tolerated_low_confidence(0.06) benign(0.009) TCGA-44-6145-01 11 26669345 26669345 C A ANO3 Missense_Mutation p.R840S 0.16 deleterious(0) probably_damaging(1) TCGA-44-6145-01 11 30932927 30932927 C A DCDC1 Missense_Mutation p.V1232L 0.33 deleterious(0.01) benign(0.198) TCGA-44-6145-01 11 35515796 35515796 C A PAMR1 Missense_Mutation p.C33F 0.20 deleterious(0) probably_damaging(0.999) TCGA-44-6145-01 11 379988 379988 G T B4GALNT4 Nonsense_Mutation p.E871* 0.13 TCGA-44-6145-01 11 44069676 44069676 G T ACCSL Missense_Mutation p.L30F 0.09 deleterious(0.01) possibly_damaging(0.486) TCGA-44-6145-01 11 46398736 46398736 C T DGKZ Silent p.P960P 0.19 TCGA-44-6145-01 11 5080580 5080580 C A OR52E2 Missense_Mutation p.G93V 0.33 deleterious(0.01) benign(0.003) TCGA-44-6145-01 11 5410856 5410856 C A OR51M1 Silent p.S76S 0.18 TCGA-44-6145-01 11 5475122 5475122 T A OR51I2 Missense_Mutation p.V135E 0.16 deleterious(0) possibly_damaging(0.682) TCGA-44-6145-01 11 5530683 5530683 A T UBQLN3 Missense_Mutation p.S36T 0.18 tolerated(0.15) possibly_damaging(0.65) TCGA-44-6145-01 11 55595244 55595244 C A OR5L2 Missense_Mutation p.L184I 0.13 tolerated(0.21) benign(0.022) TCGA-44-6145-01 11 55735507 55735507 G T OR10AG1 Missense_Mutation p.P145T 0.14 deleterious(0.01) probably_damaging(0.915) TCGA-44-6145-01 11 55873077 55873077 C A OR8H2 Missense_Mutation p.L187M 0.16 deleterious(0) possibly_damaging(0.901) TCGA-44-6145-01 11 5603032 5603032 C T OR52B6 Missense_Mutation p.P309L 0.16 deleterious(0) probably_damaging(0.997) TCGA-44-6145-01 11 57381888 57381888 T A SERPING1 Missense_Mutation p.V446E 0.13 deleterious(0) probably_damaging(0.995) TCGA-44-6145-01 11 5776693 5776693 T C OR52N4 Silent p.N241N 0.09 TCGA-44-6145-01 11 60073661 60073661 G T MS4A4A Missense_Mutation p.C212F 0.12 deleterious(0.01) probably_damaging(0.931) TCGA-44-6145-01 11 65988115 65988115 T C PACS1 Missense_Mutation p.L351P 0.11 tolerated(0.2) probably_damaging(0.99) TCGA-44-6145-01 11 67432013 67432013 C G ALDH3B2 Missense_Mutation p.V243L 0.20 tolerated(0.06) benign(0.384) TCGA-44-6145-01 11 74876920 74876920 T A SLCO2B1 Missense_Mutation p.V125E 0.17 deleterious(0) possibly_damaging(0.82) TCGA-44-6145-01 11 87847169 87847169 C A RAB38 Missense_Mutation p.C208F 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-6145-01 11 88300971 88300971 A T GRM5 Missense_Mutation p.L627Q 0.20 deleterious(0) probably_damaging(1) TCGA-44-6145-01 11 89768762 89768762 C A TRIM49C Missense_Mutation p.P128H 0.11 deleterious(0) probably_damaging(0.931) TCGA-44-6145-01 12 103699904 103699904 T A C12orf42 Missense_Mutation p.Q160L 0.15 deleterious(0) benign(0.277) TCGA-44-6145-01 12 10568380 10568380 C A KLRC3 Missense_Mutation p.D201Y 0.11 deleterious(0.04) benign(0.014) TCGA-44-6145-01 12 108086637 108086637 G T PWP1 Silent p.G122G 0.08 TCGA-44-6145-01 12 113557022 113557022 C A RASAL1 Nonsense_Mutation p.E185* 0.26 TCGA-44-6145-01 12 113812724 113812724 C T PLBD2 Silent p.L257L 0.18 TCGA-44-6145-01 12 123950105 123950105 C G SNRNP35 Silent p.P11P 0.20 TCGA-44-6145-01 12 130926762 130926762 A T RIMBP2 Missense_Mutation p.C362S 0.10 tolerated(0.45) benign(0.097) TCGA-44-6145-01 12 15747894 15747894 G T PTPRO Missense_Mutation p.Q1190H 0.11 deleterious(0.01) probably_damaging(0.945) TCGA-44-6145-01 12 20522824 20522824 A T PDE3A Silent p.T202T 0.14 TCGA-44-6145-01 12 21661496 21661496 G T GOLT1B Splice_Site p.X99_splice 0.12 TCGA-44-6145-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.25 deleterious(0) possibly_damaging(0.479) TCGA-44-6145-01 12 29670372 29670372 G T TMTC1 Silent p.L719L 0.11 TCGA-44-6145-01 12 41327516 41327516 G C CNTN1 Missense_Mutation p.R274P 0.18 deleterious(0.03) possibly_damaging(0.817) TCGA-44-6145-01 12 45409971 45409971 T A DBX2 3'UTR 0.32 TCGA-44-6145-01 12 45410014 45410014 G T DBX2 3'UTR 0.06 TCGA-44-6145-01 12 45566945 45566945 C A PLEKHA8P1 RNA 0.12 TCGA-44-6145-01 12 52377917 52377917 G A ACVR1B Missense_Mutation p.A357T 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-44-6145-01 12 53096691 53096691 G A KRT77 Silent p.A176A 0.08 TCGA-44-6145-01 12 57850274 57850274 G T INHBE Silent p.R232R 0.15 TCGA-44-6145-01 12 57963420 57963420 G - KIF5A Frame_Shift_Del p.E358Rfs*10 0.13 TCGA-44-6145-01 12 66221815 66221815 G T HMGA2 Missense_Mutation p.R49M 0.17 deleterious(0) possibly_damaging(0.803) TCGA-44-6145-01 12 75875626 75875626 G C GLIPR1 Missense_Mutation p.A63P 0.14 tolerated(0.23) possibly_damaging(0.832) TCGA-44-6145-01 12 85518290 85518290 G T LRRIQ1 Nonsense_Mutation p.E1334* 0.13 TCGA-44-6145-01 12 95927532 95927532 T C USP44 Silent p.E167E 0.20 TCGA-44-6145-01 12 96707200 96707200 C A CDK17 Missense_Mutation p.D106Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-44-6145-01 12 97313900 97313900 C A NEDD1 Missense_Mutation p.N169K 0.12 tolerated(0.31) benign(0.004) TCGA-44-6145-01 13 114193696 114193696 A T TMCO3 Missense_Mutation p.M522L 0.17 tolerated(0.14) possibly_damaging(0.513) TCGA-44-6145-01 13 115091623 115091623 G T CHAMP1 Missense_Mutation p.R769L 0.20 deleterious(0) probably_damaging(0.996) TCGA-44-6145-01 13 25060347 25060347 C A PARP4 Missense_Mutation p.L437F 0.15 tolerated(0.29) benign(0.149) TCGA-44-6145-01 13 26974649 26974649 G T CDK8 Missense_Mutation p.Q331H 0.13 deleterious(0.01) benign(0.145) TCGA-44-6145-01 13 38143960 38143960 T C POSTN Splice_Site p.X757_splice 0.22 TCGA-44-6145-01 13 44411448 44411448 C T CCDC122 Missense_Mutation p.E264K 0.08 deleterious(0.03) possibly_damaging(0.752) TCGA-44-6145-01 13 44411449 44411449 G T CCDC122 Silent p.A263A 0.07 TCGA-44-6145-01 13 44457980 44457980 A G LACC1 Missense_Mutation p.Q272R 0.20 tolerated(0.11) benign(0.213) TCGA-44-6145-01 13 49281193 49281193 G T CYSLTR2 Silent p.L80L 0.19 TCGA-44-6145-01 13 52035123 52035123 C T RPS4XP16 RNA 0.17 TCGA-44-6145-01 13 70281875 70281875 C A KLHL1 Missense_Mutation p.R690I 0.22 deleterious(0) probably_damaging(1) TCGA-44-6145-01 13 88329776 88329776 C A SLITRK5 Missense_Mutation p.N711K 0.13 tolerated(0.08) benign(0.103) TCGA-44-6145-01 14 20443947 20443947 G C OR4K15 Silent p.L90L 0.15 TCGA-44-6145-01 14 24648811 24648811 G A REC8 Missense_Mutation p.E443K 0.16 deleterious(0.01) probably_damaging(0.953) TCGA-44-6145-01 14 42356224 42356224 C A LRFN5 Missense_Mutation p.N132K 0.08 deleterious(0) probably_damaging(1) TCGA-44-6145-01 14 47530708 47530708 C T MDGA2 Silent p.E423E 0.13 TCGA-44-6145-01 14 51371123 51371123 C T ABHD12B 3'UTR 0.22 TCGA-44-6145-01 14 58941420 58941420 A G KIAA0586 Silent p.P963P 0.20 TCGA-44-6145-01 14 71576295 71576295 G T PCNX Missense_Mutation p.G2291C 0.18 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-44-6145-01 15 22383396 22383396 T A OR4N4 Nonsense_Mutation p.C308* 0.16 TCGA-44-6145-01 15 23932034 23932034 C - NDN Frame_Shift_Del p.V111Sfs*7 0.10 TCGA-44-6145-01 15 24923779 24923779 C G NPAP1 Missense_Mutation p.P922R 0.07 deleterious(0.02) probably_damaging(0.998) TCGA-44-6145-01 15 25417793 25417793 G A SNORD115-2 RNA 0.07 TCGA-44-6145-01 15 25427385 25427385 C A SNORD115-6 3'Flank 0.27 TCGA-44-6145-01 15 25444453 25444453 G T SNORD115-14 3'Flank 0.17 TCGA-44-6145-01 15 26806081 26806081 G T GABRB3 Silent p.R360R 0.18 TCGA-44-6145-01 15 34652348 34652348 G T LPCAT4 Silent p.G402G 0.04 TCGA-44-6145-01 15 40568142 40568142 G T PAK6 Silent p.L631L 0.08 TCGA-44-6145-01 15 42107526 42107526 G T MAPKBP1 Missense_Mutation p.D420Y 0.20 deleterious(0) benign(0.047) TCGA-44-6145-01 15 63132786 63132786 G A TLN2 Missense_Mutation p.E2536K 0.17 deleterious_low_confidence(0.02) benign(0.022) TCGA-44-6145-01 15 65489472 65489472 G A CILP Missense_Mutation p.P1051L 0.11 deleterious(0) probably_damaging(0.999) TCGA-44-6145-01 15 88679799 88679799 G T NTRK3 Silent p.R222R 0.09 TCGA-44-6145-01 16 17235204 17235204 C A XYLT1 Missense_Mutation p.D465Y 0.21 deleterious(0) probably_damaging(1) TCGA-44-6145-01 16 17294435 17294435 A C XYLT1 Missense_Mutation p.F330L 0.13 deleterious(0) possibly_damaging(0.859) TCGA-44-6145-01 16 20748556 20748556 C A THUMPD1 Missense_Mutation p.Q236H 0.13 deleterious(0.01) possibly_damaging(0.811) TCGA-44-6145-01 16 28990742 28990742 G T SPNS1 Missense_Mutation p.A205S 0.18 deleterious(0.01) benign(0.405) TCGA-44-6145-01 16 30198005 30198005 C T CORO1A Silent p.N95N 0.24 TCGA-44-6145-01 16 30776605 30776605 G C RNF40 Missense_Mutation p.R292P 0.20 deleterious(0) probably_damaging(0.977) TCGA-44-6145-01 16 31422734 31422734 C A ITGAD Missense_Mutation p.L535M 0.11 tolerated(0.06) benign(0.176) TCGA-44-6145-01 16 51173276 51173276 G T SALL1 Missense_Mutation p.P953T 0.28 tolerated(0.31) benign(0.011) TCGA-44-6145-01 16 69964119 69964119 G T WWP2 Missense_Mutation p.R468L 0.18 deleterious(0) probably_damaging(0.999) TCGA-44-6145-01 16 76350316 76350316 G T CNTNAP4 Missense_Mutation p.C6F 0.24 deleterious(0) probably_damaging(0.999) TCGA-44-6145-01 16 76509915 76509915 G C CNTNAP4 Missense_Mutation p.G506R 0.09 deleterious(0) probably_damaging(0.913) TCGA-44-6145-01 16 77355074 77355074 C A ADAMTS18 Missense_Mutation p.G730V 0.11 deleterious(0) probably_damaging(0.931) TCGA-44-6145-01 16 89293777 89293777 G T ZNF778 Nonsense_Mutation p.G333* 0.14 TCGA-44-6145-01 17 10543658 10543658 C G MYH3 Silent p.V806V 0.08 TCGA-44-6145-01 17 11592948 11592948 C A DNAH9 Missense_Mutation p.S1270Y 0.15 benign(0.308) TCGA-44-6145-01 17 11592949 11592949 C A DNAH9 Silent p.S1270S 0.14 TCGA-44-6145-01 17 16320923 16320923 C G TRPV2 5'UTR 0.15 TCGA-44-6145-01 17 18196026 18196026 C A TOP3A Missense_Mutation p.R405L 0.16 deleterious(0) probably_damaging(0.975) TCGA-44-6145-01 17 34072004 34072004 C A GAS2L2 Nonsense_Mutation p.E838* 0.23 TCGA-44-6145-01 17 39034618 39034618 C A KRT20 Splice_Site p.X307_splice 0.10 TCGA-44-6145-01 17 41103887 41103887 C A AARSD1 Missense_Mutation p.G345C 0.18 deleterious(0) probably_damaging(0.997) TCGA-44-6145-01 17 42340241 42340241 G T SLC4A1 5'UTR 0.15 TCGA-44-6145-01 17 42857163 42857163 G T ADAM11 3'UTR 0.11 TCGA-44-6145-01 17 42857179 42857179 G T ADAM11 3'UTR 0.12 TCGA-44-6145-01 17 45913760 45913760 C A LRRC46 Missense_Mutation p.R172S 0.24 tolerated(0.15) benign(0.243) TCGA-44-6145-01 17 4713016 4713016 C - PLD2 Frame_Shift_Del p.H216Tfs*25 0.20 TCGA-44-6145-01 17 57050271 57050271 G C PPM1E Missense_Mutation p.V399L 0.19 deleterious(0.03) possibly_damaging(0.886) TCGA-44-6145-01 17 58234889 58234889 A T CA4 Nonsense_Mutation p.K124* 0.14 TCGA-44-6145-01 17 60754845 60754845 A T MRC2 Nonsense_Mutation p.K684* 0.12 TCGA-44-6145-01 17 61958500 61958500 G T GH2 Silent p.A60A 0.16 TCGA-44-6145-01 17 6913416 6913416 T A AC027763.2 Intron 0.28 TCGA-44-6145-01 17 74288678 74288678 C T QRICH2 Silent p.L544L 0.15 TCGA-44-6145-01 17 74383634 74383634 C G SPHK1 Silent p.P460P 0.08 TCGA-44-6145-01 17 7574034 7574034 C A TP53 Splice_Site p.X332_splice 0.25 TCGA-44-6145-01 18 29205560 29205560 C A B4GALT6 3'UTR 0.25 TCGA-44-6145-01 18 43796479 43796479 G T C18orf25 Silent p.L211L 0.13 TCGA-44-6145-01 18 47390574 47390574 C G MYO5B Missense_Mutation p.E1260D 0.23 deleterious(0.04) probably_damaging(0.997) TCGA-44-6145-01 18 59217255 59217255 C A CDH20 Missense_Mutation p.Q565K 0.11 tolerated(0.09) benign(0.007) TCGA-44-6145-01 18 70451042 70451042 T A NETO1 Nonsense_Mutation p.K247* 0.23 TCGA-44-6145-01 18 77133995 77133995 G T ATP9B Silent p.L1056L 0.06 TCGA-44-6145-01 18 9257679 9257679 G T ANKRD12 Nonsense_Mutation p.E1472* 0.21 TCGA-44-6145-01 19 12951814 12951814 C G MAST1 Missense_Mutation p.P61R 0.09 deleterious(0) probably_damaging(0.999) TCGA-44-6145-01 19 22156079 22156079 C A ZNF208 Missense_Mutation p.C586F 0.21 deleterious(0.01) probably_damaging(0.94) TCGA-44-6145-01 19 3452574 3452574 C T NFIC Silent p.A393A 0.19 TCGA-44-6145-01 19 38621383 38621383 C A SIPA1L3 Silent p.I1038I 0.19 TCGA-44-6145-01 19 38817960 38817960 G T KCNK6 Missense_Mutation p.V287L 0.17 tolerated(0.34) benign(0.079) TCGA-44-6145-01 19 3964952 3964952 C A DAPK3 Missense_Mutation p.G34C 0.11 deleterious(0) possibly_damaging(0.461) TCGA-44-6145-01 19 39660361 39660361 C T PAK4 Silent p.P56P 0.24 TCGA-44-6145-01 19 39788642 39788642 C A IFNL1 Silent p.A96A 0.10 TCGA-44-6145-01 19 41063082 41063082 G A SPTBN4 Missense_Mutation p.A1815T 0.21 deleterious(0.02) probably_damaging(0.922) TCGA-44-6145-01 19 49243435 49243435 C T RASIP1 Silent p.L35L 0.11 TCGA-44-6145-01 19 51135639 51135639 C A SYT3 Missense_Mutation p.G193V 0.15 tolerated(0.06) benign(0.007) TCGA-44-6145-01 19 51960764 51960764 C A SIGLEC8 Missense_Mutation p.L228F 0.24 tolerated(0.96) benign(0.034) TCGA-44-6145-01 19 52149086 52149086 G A SIGLEC14 Missense_Mutation p.R217C 0.17 deleterious(0.04) possibly_damaging(0.822) TCGA-44-6145-01 19 52941035 52941035 C T ZNF534 Nonsense_Mutation p.Q121* 0.10 TCGA-44-6145-01 19 53643937 53643937 C A ZNF347 Missense_Mutation p.G716V 0.12 deleterious(0) probably_damaging(0.994) TCGA-44-6145-01 19 54849250 54849250 G T LILRA4 Nonsense_Mutation p.Y204* 0.15 TCGA-44-6145-01 19 55086241 55086241 G C LILRA2 Silent p.V132V 0.23 TCGA-44-6145-01 19 55107774 55107774 C A LILRA1 Missense_Mutation p.A360E 0.19 tolerated(1) benign(0.005) TCGA-44-6145-01 19 55175419 55175419 C A LILRB4 Missense_Mutation p.A93E 0.13 deleterious(0) probably_damaging(0.998) TCGA-44-6145-01 19 55220481 55220481 C G AC098784.2 3'Flank 0.23 TCGA-44-6145-01 19 55805585 55805585 C A BRSK1 Silent p.S193S 0.16 TCGA-44-6145-01 19 56701647 56701647 C T ZSCAN5B Missense_Mutation p.G346D 0.14 tolerated(0.05) probably_damaging(1) TCGA-44-6145-01 19 57765064 57765064 G T ZNF805 Nonsense_Mutation p.G293* 0.17 TCGA-44-6145-01 19 57910758 57910758 G T ZNF548 Missense_Mutation p.S380I 0.15 tolerated(0.1) possibly_damaging(0.839) TCGA-44-6145-01 19 58101972 58101972 A G ZIK1 Missense_Mutation p.R265G 0.12 deleterious(0) possibly_damaging(0.657) TCGA-44-6145-01 19 58196642 58196642 G T ZNF551 Nonsense_Mutation p.E32* 0.15 TCGA-44-6145-01 19 7174600 7174600 C T INSR Missense_Mutation p.G373R 0.12 tolerated(1) probably_damaging(1) TCGA-44-6145-01 19 9061893 9061893 G T MUC16 Missense_Mutation p.T8518N 0.19 unknown(0) TCGA-44-6145-01 19 9090511 9090511 G T MUC16 Missense_Mutation p.T435K 0.21 unknown(0) TCGA-44-6145-01 1 102270473 102270473 T A OLFM3 Splice_Site p.X234_splice 0.20 TCGA-44-6145-01 1 111146095 111146095 T G KCNA2 Missense_Mutation p.K437T 0.20 tolerated_low_confidence(0.77) benign(0.272) TCGA-44-6145-01 1 11308080 11308080 C A MTOR Missense_Mutation p.M304I 0.11 tolerated(0.47) benign(0.015) TCGA-44-6145-01 1 114505013 114505013 G C HIPK1 Missense_Mutation p.A686P 0.19 deleterious(0.02) possibly_damaging(0.905) TCGA-44-6145-01 1 12918928 12918928 G C PRAMEF2 Missense_Mutation p.A22P 0.11 deleterious(0.05) benign(0.006) TCGA-44-6145-01 1 152975939 152975939 A T SPRR3 Missense_Mutation p.K148M 0.23 deleterious(0.02) possibly_damaging(0.77) TCGA-44-6145-01 1 158368884 158368884 C A OR10T2 Missense_Mutation p.V125L 0.20 tolerated(0.09) possibly_damaging(0.672) TCGA-44-6145-01 1 158592830 158592830 C A SPTA1 Silent p.L2021L 0.17 TCGA-44-6145-01 1 159283954 159283954 C A OR10J3 Missense_Mutation p.G166C 0.17 deleterious(0.03) benign(0.049) TCGA-44-6145-01 1 164789369 164789369 T G PBX1 Missense_Mutation p.L353R 0.06 deleterious(0) probably_damaging(0.944) TCGA-44-6145-01 1 169670773 169670773 G A SELL Missense_Mutation p.P350S 0.27 tolerated(0.14) probably_damaging(1) TCGA-44-6145-01 1 173493226 173493226 A G SLC9C2 Missense_Mutation p.L841P 0.18 deleterious(0) probably_damaging(0.996) TCGA-44-6145-01 1 17410262 17410262 C A PADI2 Missense_Mutation p.V337F 0.11 deleterious(0) possibly_damaging(0.9) TCGA-44-6145-01 1 180886014 180886014 C A KIAA1614 Missense_Mutation p.L259M 0.17 deleterious(0.03) probably_damaging(0.99) TCGA-44-6145-01 1 182827319 182827319 C T DHX9 Missense_Mutation p.H252Y 0.15 deleterious(0) probably_damaging(0.998) TCGA-44-6145-01 1 19449430 19449430 C A UBR4 Missense_Mutation p.R3238L 0.19 benign(0.054) TCGA-44-6145-01 1 197112663 197112663 G A ASPM Missense_Mutation p.S240F 0.16 tolerated(0.09) benign(0.405) TCGA-44-6145-01 1 200960046 200960046 G T KIF21B Silent p.R896R 0.20 TCGA-44-6145-01 1 203453067 203453067 A G PRELP Missense_Mutation p.N252S 0.15 deleterious(0) probably_damaging(1) TCGA-44-6145-01 1 212798394 212798394 G A FAM71A Missense_Mutation p.V59M 0.18 deleterious(0) probably_damaging(0.993) TCGA-44-6145-01 1 215408346 215408346 G T KCNK2 Missense_Mutation p.C380F 0.14 tolerated_low_confidence(0.05) benign(0.342) TCGA-44-6145-01 1 216424377 216424377 C T USH2A Missense_Mutation p.G679R 0.15 probably_damaging(1) TCGA-44-6145-01 1 218607527 218607527 A T TGFB2 Missense_Mutation p.D233V 0.17 deleterious(0.01) possibly_damaging(0.625) TCGA-44-6145-01 1 22222444 22222444 C A HSPG2 Missense_Mutation p.G72V 0.14 benign(0.424) TCGA-44-6145-01 1 229438646 229438646 G T RAB4A Missense_Mutation p.Q193H 0.15 deleterious(0.03) benign(0.162) TCGA-44-6145-01 1 235715385 235715385 G T GNG4 3'UTR 0.11 TCGA-44-6145-01 1 235918893 235918893 T A LYST Nonsense_Mutation p.K2372* 0.18 TCGA-44-6145-01 1 240656261 240656261 C A GREM2 3'UTR 0.18 TCGA-44-6145-01 1 248224588 248224588 C A OR2L3 Missense_Mutation p.T202N 0.10 tolerated(0.11) possibly_damaging(0.848) TCGA-44-6145-01 1 248487473 248487473 G T OR2M7 Missense_Mutation p.T133N 0.16 deleterious(0.01) benign(0.14) TCGA-44-6145-01 1 28477276 28477276 G T PTAFR Missense_Mutation p.P86H 0.08 tolerated(0.05) benign(0.202) TCGA-44-6145-01 1 31426788 31426788 A G PUM1 Silent p.A788A 0.12 TCGA-44-6145-01 1 41486066 41486066 C G SLFNL1 Silent p.P89P 0.11 TCGA-44-6145-01 1 67263820 67263820 C A INSL5 Missense_Mutation p.G95V 0.12 deleterious(0.01) possibly_damaging(0.643) TCGA-44-6145-01 1 74507107 74507107 A T LRRIQ3 Missense_Mutation p.L503Q 0.10 tolerated(0.55) benign(0.017) TCGA-44-6145-01 1 76253183 76253183 G T RABGGTB Missense_Mutation p.G2V 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.461) TCGA-44-6145-01 1 86951077 86951077 C A CLCA1 Missense_Mutation p.Q263K 0.19 deleterious(0) possibly_damaging(0.856) TCGA-44-6145-01 1 99771542 99771542 C T LPPR4 Missense_Mutation p.P423L 0.11 deleterious(0) possibly_damaging(0.545) TCGA-44-6145-01 20 1617081 1617081 G T SIRPG Silent p.T167T 0.19 TCGA-44-6145-01 20 3018722 3018722 C T PTPRA Silent p.C784C 0.17 TCGA-44-6145-01 20 42893134 42893134 G T GDAP1L1 Missense_Mutation p.G232V 0.14 tolerated(0.18) benign(0.214) TCGA-44-6145-01 20 47989564 47989564 G T KCNB1 Missense_Mutation p.P845T 0.10 deleterious_low_confidence(0) possibly_damaging(0.864) TCGA-44-6145-01 20 57768948 57768948 G C ZNF831 Missense_Mutation p.W958C 0.14 tolerated(0.1) benign(0.001) TCGA-44-6145-01 20 62493424 62493424 C G ABHD16B Missense_Mutation p.C177W 0.17 deleterious(0) probably_damaging(1) TCGA-44-6145-01 20 62839561 62839561 C T MYT1 Missense_Mutation p.P338S 0.18 probably_damaging(0.999) TCGA-44-6145-01 20 9459613 9459613 C A PLCB4 Missense_Mutation p.P1181Q 0.17 deleterious_low_confidence(0.01) benign(0.336) TCGA-44-6145-01 21 32185358 32185358 C A KRTAP8-1 Missense_Mutation p.A61S 0.25 tolerated_low_confidence(0.55) probably_damaging(0.918) TCGA-44-6145-01 22 19029328 19029328 C A DGCR2 Missense_Mutation p.G384V 0.09 deleterious(0.03) probably_damaging(0.998) TCGA-44-6145-01 22 40366981 40366981 G T GRAP2 Nonsense_Mutation p.E296* 0.22 TCGA-44-6145-01 2 102964500 102964500 G A IL1RL1 Missense_Mutation p.E356K 0.06 deleterious(0) possibly_damaging(0.606) TCGA-44-6145-01 2 108618444 108618444 G T SLC5A7 Missense_Mutation p.G230V 0.17 deleterious(0) probably_damaging(0.996) TCGA-44-6145-01 2 113742478 113742478 G A IL36G Missense_Mutation p.R121H 0.17 tolerated(1) benign(0.011) TCGA-44-6145-01 2 113820090 113820090 C A IL36RN Silent p.R102R 0.13 TCGA-44-6145-01 2 113832335 113832335 C G IL1F10 Missense_Mutation p.R52G 0.15 tolerated(0.13) possibly_damaging(0.792) TCGA-44-6145-01 2 11922600 11922600 G T LPIN1 Missense_Mutation p.A460S 0.16 tolerated(0.45) benign(0.005) TCGA-44-6145-01 2 130872806 130872806 T C POTEF Missense_Mutation p.K206R 0.10 deleterious_low_confidence(0) possibly_damaging(0.872) TCGA-44-6145-01 2 130877748 130877748 T A POTEF Missense_Mutation p.K114M 0.12 deleterious_low_confidence(0) possibly_damaging(0.894) TCGA-44-6145-01 2 131519959 131519959 C A AMER3 Missense_Mutation p.T105K 0.24 tolerated(0.18) benign(0.055) TCGA-44-6145-01 2 133543133 133543133 G T NCKAP5 Silent p.P417P 0.13 TCGA-44-6145-01 2 133543134 133543134 G T NCKAP5 Missense_Mutation p.P417H 0.13 deleterious(0) probably_damaging(0.982) TCGA-44-6145-01 2 141533673 141533673 G T LRP1B Missense_Mutation p.Q1832K 0.10 benign(0.042) TCGA-44-6145-01 2 153535966 153535966 G T PRPF40A Silent p.P159P 0.19 TCGA-44-6145-01 2 15358906 15358906 G A NBAS Silent p.P2141P 0.15 TCGA-44-6145-01 2 162274296 162274296 G T TBR1 Nonsense_Mutation p.G268* 0.12 TCGA-44-6145-01 2 175618297 175618297 C T CHRNA1 Missense_Mutation p.V263I 0.17 tolerated(0.08) benign(0.129) TCGA-44-6145-01 2 178528660 178528660 G T PDE11A Missense_Mutation p.N860K 0.21 tolerated(0.23) probably_damaging(0.982) TCGA-44-6145-01 2 182412572 182412572 C A CERKL Missense_Mutation p.R405M 0.13 tolerated(0.14) benign(0.017) TCGA-44-6145-01 2 187615876 187615876 A T FAM171B Missense_Mutation p.E247V 0.13 deleterious(0) possibly_damaging(0.513) TCGA-44-6145-01 2 187712478 187712478 C T ZSWIM2 Silent p.P70P 0.11 TCGA-44-6145-01 2 187712479 187712479 G T ZSWIM2 Missense_Mutation p.P70Q 0.10 tolerated(0.14) benign(0.007) TCGA-44-6145-01 2 189943287 189943287 C A COL5A2 Missense_Mutation p.R338S 0.14 probably_damaging(0.955) TCGA-44-6145-01 2 203407114 203407114 G T BMPR2 Missense_Mutation p.V453L 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-44-6145-01 2 207003314 207003314 C A NDUFS1 Silent p.V443V 0.11 TCGA-44-6145-01 2 210561275 210561275 G T MAP2 Missense_Mutation p.R1397M 0.10 deleterious(0) probably_damaging(1) TCGA-44-6145-01 2 219294032 219294032 C T VIL1 Nonsense_Mutation p.R198* 0.08 TCGA-44-6145-01 2 219890775 219890775 T A CCDC108 Missense_Mutation p.H773L 0.13 tolerated(0.26) benign(0.012) TCGA-44-6145-01 2 219892628 219892628 C A CCDC108 Missense_Mutation p.S652I 0.27 deleterious(0) probably_damaging(0.972) TCGA-44-6145-01 2 225710297 225710297 G A DOCK10 Silent p.H766H 0.19 TCGA-44-6145-01 2 231774831 231774831 G T GPR55 Missense_Mutation p.L283M 0.15 deleterious(0) probably_damaging(1) TCGA-44-6145-01 2 231775406 231775406 G T GPR55 Missense_Mutation p.P91Q 0.06 tolerated(0.64) benign(0.012) TCGA-44-6145-01 2 238274635 238274635 G T COL6A3 Missense_Mutation p.D1848E 0.15 possibly_damaging(0.621) TCGA-44-6145-01 2 239049495 239049495 G T KLHL30 Missense_Mutation p.D34Y 0.14 deleterious(0) probably_damaging(1) TCGA-44-6145-01 2 26680870 26680870 G - OTOF 3'UTR 0.21 TCGA-44-6145-01 2 26689581 26689581 C A OTOF Splice_Site p.X1500_splice 0.14 TCGA-44-6145-01 2 37032694 37032694 G T VIT Nonsense_Mutation p.E426* 0.12 TCGA-44-6145-01 2 46851311 46851311 C A CRIPT Missense_Mutation p.A84E 0.18 deleterious(0) probably_damaging(0.946) TCGA-44-6145-01 2 48026966 48026966 G T MSH6 Missense_Mutation p.C615F 0.04 deleterious(0.03) benign(0.001) TCGA-44-6145-01 2 71303832 71303832 G T NAGK Splice_Site p.X301_splice 0.16 TCGA-44-6145-01 2 71753445 71753445 G C DYSF Silent p.L415L 0.16 TCGA-44-6145-01 2 89246973 89246973 G T IGKV1-5 Missense_Mutation p.P66H 0.15 deleterious(0) possibly_damaging(0.71) TCGA-44-6145-01 2 89278502 89278502 A G IGKV3-7 Translation_Start_Site p.M1? 0.10 deleterious(0) probably_damaging(0.916) TCGA-44-6145-01 2 89309479 89309479 A T IGKV1-9 Silent p.P117P 0.21 TCGA-44-6145-01 3 131404802 131404802 C A CPNE4 Missense_Mutation p.D170Y 0.32 deleterious(0) possibly_damaging(0.785) TCGA-44-6145-01 3 150931005 150931005 G A P2RY14 3'UTR 0.30 TCGA-44-6145-01 3 151474791 151474791 T C AADACL2 Silent p.D205D 0.41 TCGA-44-6145-01 3 183689508 183689508 C A ABCC5 Missense_Mutation p.R535L 0.31 tolerated(0.31) benign(0) TCGA-44-6145-01 3 196089416 196089416 C A UBXN7 Missense_Mutation p.S326I 0.31 deleterious(0.02) possibly_damaging(0.901) TCGA-44-6145-01 3 26751340 26751340 T G LRRC3B Silent p.P59P 0.17 TCGA-44-6145-01 3 44948497 44948497 A G TGM4 Missense_Mutation p.I378V 0.08 deleterious(0.05) benign(0.017) TCGA-44-6145-01 3 98109906 98109906 C A OR5K3 Missense_Mutation p.H133N 0.37 tolerated(0.31) benign(0.25) TCGA-44-6145-01 4 139980359 139980359 C A ELF2 Missense_Mutation p.Q508H 0.18 tolerated(0.99) benign(0.015) TCGA-44-6145-01 4 155226379 155226379 G T DCHS2 Silent p.V1300V 0.17 TCGA-44-6145-01 4 159568062 159568062 G A RXFP1 Missense_Mutation p.G489R 0.10 deleterious(0) probably_damaging(0.998) TCGA-44-6145-01 4 178896990 178896990 G T LINC01098 Missense_Mutation p.D65Y 0.18 tolerated_low_confidence(1) probably_damaging(0.937) TCGA-44-6145-01 4 190883020 190883020 A G FRG1 Missense_Mutation p.K225E 0.08 tolerated(0.46) benign(0.088) TCGA-44-6145-01 4 22749245 22749245 T C GBA3 Missense_Mutation p.W205R 0.18 deleterious(0.01) probably_damaging(1) TCGA-44-6145-01 4 39247011 39247011 C - WDR19 Frame_Shift_Del p.H891Tfs*26 0.20 TCGA-44-6145-01 4 42554575 42554575 G C ATP8A1 Missense_Mutation p.T489R 0.14 deleterious(0) probably_damaging(0.999) TCGA-44-6145-01 4 46086071 46086071 C A GABRG1 Splice_Site p.X85_splice 0.25 TCGA-44-6145-01 4 66201737 66201737 C A EPHA5 Missense_Mutation p.R922M 0.16 deleterious(0) probably_damaging(1) TCGA-44-6145-01 4 68919562 68919562 A G TMPRSS11F 3'UTR 0.26 TCGA-44-6145-01 4 69962328 69962328 A T UGT2B7 Silent p.A30A 0.14 TCGA-44-6145-01 5 112214482 112214482 T A REEP5 3'UTR 0.19 TCGA-44-6145-01 5 11364898 11364898 C T CTNND2 Missense_Mutation p.V428I 0.10 deleterious(0.01) benign(0.156) TCGA-44-6145-01 5 121187725 121187725 C T FTMT Missense_Mutation p.R23C 0.33 tolerated_low_confidence(0.09) benign(0.007) TCGA-44-6145-01 5 13786382 13786382 C A DNAH5 Missense_Mutation p.R2909L 0.19 benign(0.25) TCGA-44-6145-01 5 138713677 138713677 G T SLC23A1 Silent p.G484G 0.18 TCGA-44-6145-01 5 138994325 138994325 A G UBE2D2 Missense_Mutation p.H55R 0.23 deleterious_low_confidence(0.04) benign(0.239) TCGA-44-6145-01 5 140537601 140537601 C A PCDHB17 3'UTR 0.13 TCGA-44-6145-01 5 140537602 140537602 C A PCDHB17 3'UTR 0.13 TCGA-44-6145-01 5 140753949 140753949 C A PCDHGA6 Missense_Mutation p.P100Q 0.16 deleterious_low_confidence(0.03) benign(0.048) TCGA-44-6145-01 5 140767761 140767761 C A PCDHGB4 Missense_Mutation p.L104M 0.16 deleterious(0) probably_damaging(0.995) TCGA-44-6145-01 5 175716732 175716732 A G SIMC1 Intron 0.26 TCGA-44-6145-01 5 176026691 176026691 G T GPRIN1 Missense_Mutation p.Q49K 0.14 tolerated(0.09) benign(0.222) TCGA-44-6145-01 5 176887645 176887645 C T DBN1 Silent p.E279E 0.11 TCGA-44-6145-01 5 24509704 24509704 C A CDH10 Missense_Mutation p.R409S 0.19 tolerated(0.22) benign(0.096) TCGA-44-6145-01 5 26902602 26902602 G - CDH9 Frame_Shift_Del p.R413Gfs*4 0.20 TCGA-44-6145-01 5 31294067 31294067 A T CDH6 Splice_Site p.X77_splice 0.07 TCGA-44-6145-01 5 35753776 35753776 G T SPEF2 Silent p.A1127A 0.15 TCGA-44-6145-01 5 53815085 53815085 A T SNX18 Missense_Mutation p.T435S 0.10 tolerated(0.26) benign(0.265) TCGA-44-6145-01 5 55168177 55168177 C A IL31RA Missense_Mutation p.P118T 0.22 tolerated(0.1) benign(0.205) TCGA-44-6145-01 5 908506 908506 G T TRIP13 Missense_Mutation p.A266S 0.14 tolerated(1) benign(0.048) TCGA-44-6145-01 6 109814724 109814726 TCT - AK9 In_Frame_Del p.K1861del 0.25 TCGA-44-6145-01 6 136597526 136597526 T C BCLAF1 Silent p.E379E 0.07 TCGA-44-6145-01 6 33287401 33287401 G A DAXX Missense_Mutation p.L566F 0.31 deleterious(0.02) probably_damaging(0.996) TCGA-44-6145-01 6 348145 348145 C T DUSP22 Silent p.Y102Y 0.08 TCGA-44-6145-01 6 36274107 36274107 G T PNPLA1 Missense_Mutation p.V475L 0.19 tolerated_low_confidence(0.27) benign(0.005) TCGA-44-6145-01 6 43538667 43538667 T A XPO5 Missense_Mutation p.E122V 0.29 deleterious(0) probably_damaging(1) TCGA-44-6145-01 6 49586929 49586929 G T RHAG Missense_Mutation p.Q102K 0.23 deleterious(0.03) benign(0.033) TCGA-44-6145-01 6 53133856 53133856 C A ELOVL5 3'UTR 0.36 TCGA-44-6145-01 6 69666012 69666012 C - BAI3 Frame_Shift_Del p.H432Mfs*48 0.19 TCGA-44-6145-01 6 74073549 74073549 G T KHDC3L Missense_Mutation p.R207L 0.21 tolerated(0.33) benign(0.005) TCGA-44-6145-01 6 87967002 87967002 G T ZNF292 Missense_Mutation p.D1219Y 0.41 tolerated(0.69) possibly_damaging(0.616) TCGA-44-6145-01 7 101090977 101090977 G A COL26A1 Silent p.L98L 0.30 TCGA-44-6145-01 7 102667916 102667916 T C FBXL13 Missense_Mutation p.K103E 0.14 tolerated(0.08) benign(0.196) TCGA-44-6145-01 7 107427872 107427872 G T SLC26A3 Missense_Mutation p.S273Y 0.16 tolerated(0.15) benign(0.009) TCGA-44-6145-01 7 107871486 107871486 C T NRCAM Nonsense_Mutation p.W180* 0.07 TCGA-44-6145-01 7 113518073 113518073 C A PPP1R3A Missense_Mutation p.R1025M 0.13 tolerated(0.06) possibly_damaging(0.784) TCGA-44-6145-01 7 123349179 123349179 T C WASL Silent p.P72P 0.31 TCGA-44-6145-01 7 124503540 124503540 C A POT1 Missense_Mutation p.R137L 0.30 deleterious(0) probably_damaging(1) TCGA-44-6145-01 7 124510993 124510993 C A POT1 Missense_Mutation p.G76V 0.13 deleterious(0) probably_damaging(1) TCGA-44-6145-01 7 129919383 129919383 G T CPA2 Missense_Mutation p.V290L 0.26 deleterious(0) probably_damaging(0.95) TCGA-44-6145-01 7 132169704 132169704 C A PLXNA4 Intron 0.32 TCGA-44-6145-01 7 135311040 135311040 G C NUP205 Missense_Mutation p.R1575T 0.25 tolerated(0.06) benign(0.191) TCGA-44-6145-01 7 142032319 142032319 G T TRBV7-1 Missense_Mutation p.G47C 0.33 deleterious(0) probably_damaging(0.996) TCGA-44-6145-01 7 142124244 142124244 G A TRBV6-8 Silent p.V78V 0.13 TCGA-44-6145-01 7 142562114 142562114 G C EPHB6 Missense_Mutation p.A186P 0.12 tolerated(0.1) benign(0.001) TCGA-44-6145-01 7 143657537 143657537 G C OR2F1 Silent p.V158V 0.29 TCGA-44-6145-01 7 143827061 143827061 C A OR2A14 Missense_Mutation p.P286T 0.18 deleterious(0) probably_damaging(0.989) TCGA-44-6145-01 7 148312477 148312477 G A C7orf33 Missense_Mutation p.R173K 0.12 deleterious_low_confidence(0) benign(0.14) TCGA-44-6145-01 7 148964255 148964255 G T ZNF783 Silent p.R205R 0.10 TCGA-44-6145-01 7 150027589 150027589 A G ZBED6CL Silent p.T32T 0.18 TCGA-44-6145-01 7 157000138 157000138 T A UBE3C Missense_Mutation p.S489T 0.11 tolerated(0.14) benign(0.045) TCGA-44-6145-01 7 20739552 20739552 G T ABCB5 Missense_Mutation p.Q753H 0.16 deleterious(0) probably_damaging(0.952) TCGA-44-6145-01 7 2622283 2622283 A T IQCE Missense_Mutation p.S234C 0.20 deleterious(0) possibly_damaging(0.76) TCGA-44-6145-01 7 27135409 27135409 C A HOXA1 Silent p.A41A 0.16 TCGA-44-6145-01 7 56087349 56087349 C A PSPH Missense_Mutation p.R73S 0.12 tolerated(0.4) possibly_damaging(0.667) TCGA-44-6145-01 7 56087351 56087351 T A PSPH Missense_Mutation p.R73W 0.12 tolerated(0.18) benign(0.121) TCGA-44-6145-01 7 57188426 57188426 T A ZNF479 Missense_Mutation p.K232N 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-44-6145-01 7 64639799 64639799 T C INTS4L1 RNA 0.11 TCGA-44-6145-01 7 82583854 82583854 C G PCLO Missense_Mutation p.E2139Q 0.19 unknown(0) TCGA-44-6145-01 7 83636733 83636733 C T SEMA3A Missense_Mutation p.R359K 0.34 tolerated(1) probably_damaging(0.995) TCGA-44-6145-01 7 88424136 88424136 G T C7orf62 Missense_Mutation p.H41N 0.20 deleterious(0.03) benign(0.07) TCGA-44-6145-01 7 91712731 91712731 G T AKAP9 Missense_Mutation p.G2803V 0.19 probably_damaging(0.985) TCGA-44-6145-01 7 92733294 92733294 A T SAMD9 Missense_Mutation p.V706D 0.27 deleterious(0) possibly_damaging(0.83) TCGA-44-6145-01 7 94057003 94057003 G T COL1A2 Missense_Mutation p.G1111V 0.27 unknown(0) TCGA-44-6145-01 7 97362026 97362026 G T TAC1 Missense_Mutation p.W34C 0.26 deleterious(0) probably_damaging(1) TCGA-44-6145-01 7 97852406 97852406 C A TECPR1 Nonsense_Mutation p.E942* 0.19 TCGA-44-6145-01 7 99074071 99074071 G T ZNF789 5'UTR 0.21 TCGA-44-6145-01 8 10468155 10468155 G C RP1L1 Silent p.L1151L 0.09 TCGA-44-6145-01 8 113299383 113299383 C A CSMD3 Missense_Mutation p.A3081S 0.21 tolerated(1) benign(0.001) TCGA-44-6145-01 8 139609156 139609156 G T COL22A1 Missense_Mutation p.Q1475K 0.27 unknown(0) TCGA-44-6145-01 8 144641996 144641996 G C GSDMD Missense_Mutation p.Q89H 0.16 deleterious(0.04) benign(0.06) TCGA-44-6145-01 8 19362786 19362786 G C CSGALNACT1 Missense_Mutation p.A187G 0.10 tolerated(0.21) benign(0.181) TCGA-44-6145-01 8 2020568 2020568 C T MYOM2 Missense_Mutation p.R313C 0.24 deleterious(0) probably_damaging(0.946) TCGA-44-6145-01 8 2057201 2057201 C A MYOM2 Nonsense_Mutation p.S1020* 0.20 TCGA-44-6145-01 8 27737266 27737266 T C SCARA5 Missense_Mutation p.M391V 0.24 tolerated(0.64) benign(0) TCGA-44-6145-01 8 36663793 36663793 G T KCNU1 Missense_Mutation p.A159S 0.19 deleterious(0) probably_damaging(0.996) TCGA-44-6145-01 8 52325734 52325734 G C PXDNL Missense_Mutation p.S627C 0.24 deleterious(0.01) possibly_damaging(0.806) TCGA-44-6145-01 9 100126312 100126312 C G CCDC180 Intron 0.17 TCGA-44-6145-01 9 102594968 102594968 C T NR4A3 Intron 0.23 TCGA-44-6145-01 9 102778708 102778708 C A ERP44 Missense_Mutation p.D220Y 0.16 deleterious(0) benign(0.385) TCGA-44-6145-01 9 117124771 117124771 C G AKNA Missense_Mutation p.E611Q 0.27 tolerated(0.07) benign(0.389) TCGA-44-6145-01 9 122075577 122075577 T A BRINP1 Silent p.S19S 0.24 TCGA-44-6145-01 9 12821419 12821419 G T LURAP1L Missense_Mutation p.R116L 0.16 deleterious(0.01) possibly_damaging(0.878) TCGA-44-6145-01 9 130251778 130251778 A G LRSAM1 Missense_Mutation p.H468R 0.27 deleterious(0) possibly_damaging(0.609) TCGA-44-6145-01 9 135447819 135447819 G A C9orf171 Silent p.Q295Q 0.27 TCGA-44-6145-01 9 137777622 137777622 G T FCN2 Missense_Mutation p.Q146H 0.12 deleterious(0) probably_damaging(0.988) TCGA-44-6145-01 9 138011774 138011774 G T OLFM1 Missense_Mutation p.G385V 0.10 deleterious(0) probably_damaging(0.993) TCGA-44-6145-01 9 138011775 138011775 G T OLFM1 Silent p.G385G 0.08 TCGA-44-6145-01 9 140389498 140389498 C T PNPLA7 Missense_Mutation p.R705H 0.19 deleterious(0.01) probably_damaging(0.987) TCGA-44-6145-01 9 37746166 37746166 C A FRMPD1 Silent p.P1379P 0.17 TCGA-44-6145-01 9 5534764 5534764 C A PDCD1LG2 Silent p.V25V 0.11 TCGA-44-6145-01 9 78601129 78601129 A G PCSK5 Missense_Mutation p.N127D 0.18 deleterious(0.03) possibly_damaging(0.662) TCGA-44-6145-01 9 79321909 79321909 G T PRUNE2 Missense_Mutation p.Q1761K 0.09 tolerated(0.54) benign(0.293) TCGA-44-6145-01 9 79933209 79933209 A C VPS13A Missense_Mutation p.K1672T 0.15 tolerated(0.21) benign(0.013) TCGA-44-6145-01 9 8465644 8465644 C G PTPRD Missense_Mutation p.S1179T 0.11 tolerated(0.14) possibly_damaging(0.771) TCGA-44-6145-01 X 104440260 104440260 C A IL1RAPL2 Silent p.T62T 0.23 TCGA-44-6145-01 X 109697657 109697657 G T RGAG1 Missense_Mutation p.R1271L 0.18 deleterious_low_confidence(0.01) probably_damaging(0.915) TCGA-44-6145-01 X 12708435 12708435 C A FRMPD4 Missense_Mutation p.T268N 0.17 tolerated(0.15) possibly_damaging(0.501) TCGA-44-6145-01 X 130409975 130409975 C A IGSF1 Missense_Mutation p.R957S 0.17 deleterious(0.02) probably_damaging(0.972) TCGA-44-6145-01 X 140926218 140926218 G T MAGEC3 Missense_Mutation p.Q39H 0.21 deleterious_low_confidence(0) benign(0.216) TCGA-44-6145-01 X 151896252 151896252 C T MAGEA12 3'Flank 0.21 TCGA-44-6145-01 X 17818841 17818841 C A RAI2 Missense_Mutation p.M430I 0.04 tolerated(1) unknown(0) TCGA-44-6145-01 X 17818842 17818842 A T RAI2 Missense_Mutation p.M430K 0.04 deleterious(0) unknown(0) TCGA-44-6145-01 X 32503071 32503071 G T DMD Missense_Mutation p.S923Y 0.06 benign(0.173) TCGA-44-6145-01 X 37026894 37026894 G - FAM47C Frame_Shift_Del p.G138Efs*13 0.18 TCGA-44-6145-01 X 65474945 65474945 G T HEPH Missense_Mutation p.V932F 0.12 deleterious(0) probably_damaging(0.917) TCGA-44-6145-01 X 73961404 73961404 C A KIAA2022 Missense_Mutation p.M996I 0.22 tolerated(0.08) benign(0.001) TCGA-44-6145-01 X 73963752 73963752 C T KIAA2022 Missense_Mutation p.A214T 0.19 tolerated(0.12) benign(0.246) TCGA-44-6145-01 X 89177129 89177129 G T TGIF2LX Silent p.V15V 0.11 TCGA-44-6146-01 10 11504482 11504482 C T USP6NL Silent p.R832R 0.42 TCGA-44-6146-01 10 28900789 28900789 C T WAC Nonsense_Mutation p.Q459* 0.28 TCGA-44-6146-01 10 73047492 73047492 C T UNC5B Nonsense_Mutation p.Q291* 0.30 TCGA-44-6146-01 11 132016192 132016192 C T NTM Missense_Mutation p.R62W 0.26 deleterious(0.01) probably_damaging(0.921) TCGA-44-6146-01 11 66114503 66114503 C T B3GNT1 Missense_Mutation p.E172K 0.27 tolerated(0.41) possibly_damaging(0.484) TCGA-44-6146-01 12 109052668 109052686 TTCCAGATGATAATGGCAT - CORO1C Frame_Shift_Del p.N153Mfs*9 0.20 TCGA-44-6146-01 12 21926414 21926414 G A KCNJ8 Missense_Mutation p.A46V 0.30 tolerated(0.64) probably_damaging(0.992) TCGA-44-6146-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.29 deleterious(0) possibly_damaging(0.479) TCGA-44-6146-01 12 53564229 53564229 G A CSAD Nonsense_Mutation p.R236* 0.31 TCGA-44-6146-01 12 53879112 53879114 CTT - MAP3K12 In_Frame_Del p.K323del 0.36 TCGA-44-6146-01 12 56822747 56822747 G A TIMELESS Silent p.F408F 0.32 TCGA-44-6146-01 13 46357677 46357677 C T SIAH3 Silent p.T217T 0.35 TCGA-44-6146-01 13 95131260 95131260 C A DCT Nonsense_Mutation p.E84* 0.24 TCGA-44-6146-01 14 36988327 36988327 G T NKX2-1 Nonsense_Mutation p.S109* 0.53 TCGA-44-6146-01 15 27772631 27772631 C T GABRG3 Silent p.S306S 0.24 TCGA-44-6146-01 17 21318889 21318889 C T KCNJ12 Missense_Mutation p.R79C 0.15 deleterious(0) probably_damaging(0.982) TCGA-44-6146-01 17 34325389 34325389 A G CCL15 Missense_Mutation p.S59P 0.31 tolerated(0.6) benign(0.013) TCGA-44-6146-01 17 72846417 72846417 G A GRIN2C Silent p.Y473Y 0.33 TCGA-44-6146-01 17 7340593 7340593 C T TMEM102 Missense_Mutation p.A432V 0.40 tolerated(0.53) probably_damaging(0.999) TCGA-44-6146-01 18 71740753 71740753 G C FBXO15 Missense_Mutation p.N492K 0.05 deleterious(0.03) benign(0.08) TCGA-44-6146-01 19 5661591 5661591 G A SAFB Missense_Mutation p.R642H 0.28 deleterious(0.04) unknown(0) TCGA-44-6146-01 1 176998839 176998839 T C ASTN1 Missense_Mutation p.T351A 0.32 tolerated_low_confidence(0.07) benign(0.006) TCGA-44-6146-01 1 201355988 201355988 T C LAD1 Silent p.E167E 0.03 TCGA-44-6146-01 1 231885726 231885726 A G DISC1 Missense_Mutation p.H391R 0.36 tolerated(0.49) benign(0.043) TCGA-44-6146-01 1 237754106 237754106 C A RYR2 Missense_Mutation p.A1325D 0.36 benign(0.006) TCGA-44-6146-01 1 248814125 248814125 C T OR2T27 Missense_Mutation p.A21T 0.09 tolerated(0.64) benign(0) TCGA-44-6146-01 1 36212562 36212562 A G CLSPN Missense_Mutation p.Y887H 0.32 tolerated(0.1) benign(0.047) TCGA-44-6146-01 20 30584388 30584388 G A XKR7 Missense_Mutation p.D290N 0.26 deleterious(0) possibly_damaging(0.905) TCGA-44-6146-01 20 3278717 3278717 G C C20orf194 Missense_Mutation p.L630V 0.31 tolerated(0.12) benign(0.319) TCGA-44-6146-01 2 100079005 100079005 G T REV1 Nonsense_Mutation p.S45* 0.31 TCGA-44-6146-01 2 169851977 169851977 T G ABCB11 Missense_Mutation p.I165L 0.38 tolerated(1) benign(0.002) TCGA-44-6146-01 2 232390132 232390132 G A NMUR1 Silent p.V301V 0.26 TCGA-44-6146-01 2 8926114 8926114 G A KIDINS220 Silent p.I662I 0.30 TCGA-44-6146-01 3 186394973 186394973 C T HRG Silent p.H293H 0.04 TCGA-44-6146-01 3 188477903 188477903 C T LPP Missense_Mutation p.R415C 0.36 deleterious(0) probably_damaging(0.999) TCGA-44-6146-01 3 4345015 4345015 C A SETMAR 5'UTR 0.55 TCGA-44-6146-01 4 100062801 100062801 G T ADH4 Silent p.A51A 0.24 TCGA-44-6146-01 4 100062802 100062802 G T ADH4 Missense_Mutation p.A51D 0.25 tolerated(0.34) possibly_damaging(0.677) TCGA-44-6146-01 4 154318419 154318419 A T MND1 Missense_Mutation p.R134W 0.29 deleterious(0.01) probably_damaging(0.94) TCGA-44-6146-01 5 172661900 172661900 C A NKX2-5 Missense_Mutation p.A63S 0.45 tolerated(0.77) probably_damaging(0.935) TCGA-44-6146-01 5 26903857 26903857 G A CDH9 Silent p.D296D 0.41 TCGA-44-6146-01 5 94991871 94991871 G A RFESD Missense_Mutation p.C164Y 0.52 tolerated(1) possibly_damaging(0.875) TCGA-44-6146-01 6 43266308 43266308 G A SLC22A7 Missense_Mutation p.R71Q 0.52 tolerated(0.35) benign(0.033) TCGA-44-6146-01 6 91260267 91260267 T C MAP3K7 Missense_Mutation p.Y290C 0.36 tolerated(0.09) benign(0.086) TCGA-44-6146-01 8 110588223 110588223 G A SYBU Missense_Mutation p.L302F 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-44-6146-01 8 43025814 43025814 C T HGSNAT Silent p.L240L 0.32 TCGA-44-6146-01 9 134183555 134183555 G A PPAPDC3 Missense_Mutation p.G233S 0.25 deleterious(0.01) probably_damaging(0.957) TCGA-44-6146-01 X 123780627 123780627 C T TENM1 Missense_Mutation p.G538E 0.62 deleterious(0.01) possibly_damaging(0.881) TCGA-44-6146-01 X 130416522 130416522 T A IGSF1 Missense_Mutation p.N381I 0.71 tolerated(0.1) possibly_damaging(0.828) TCGA-44-6147-01 10 106907469 106907469 C A SORCS3 Missense_Mutation p.T466K 0.13 tolerated(0.37) possibly_damaging(0.771) TCGA-44-6147-01 10 116889227 116889227 C T ATRNL1 Silent p.C253C 0.11 TCGA-44-6147-01 10 134660763 134660763 T A TTC40 Silent p.T2005T 0.10 TCGA-44-6147-01 10 95720326 95720326 G T PIPSL RNA 0.07 TCGA-44-6147-01 11 100170106 100170106 G A CNTN5 Silent p.V866V 0.10 TCGA-44-6147-01 11 102709383 102709383 G A MMP3 Silent p.I376I 0.19 TCGA-44-6147-01 11 1027368 1027369 GG T MUC6 Frame_Shift_Del p.N710Kfs*42 0.08 TCGA-44-6147-01 11 113078648 113078648 C T NCAM1 Silent p.N339N 0.11 TCGA-44-6147-01 11 1905191 1905191 C A LSP1 Silent p.P304P 0.05 TCGA-44-6147-01 11 25098931 25098931 A C LUZP2 Silent p.A305A 0.06 TCGA-44-6147-01 11 32636029 32636029 T C CCDC73 Missense_Mutation p.E612G 0.10 tolerated(0.05) benign(0.066) TCGA-44-6147-01 11 55063038 55063038 G C TRIM51HP RNA 0.07 TCGA-44-6147-01 11 56000426 56000426 A C OR5T2 Missense_Mutation p.M79R 0.12 deleterious(0) benign(0.223) TCGA-44-6147-01 11 5730336 5730336 G T TRIM22 Missense_Mutation p.D319Y 0.08 deleterious(0.04) probably_damaging(1) TCGA-44-6147-01 11 6661117 6661117 G T DCHS1 Silent p.P576P 0.05 TCGA-44-6147-01 11 87013423 87013423 C T TMEM135 Missense_Mutation p.H213Y 0.09 deleterious(0.04) benign(0.138) TCGA-44-6147-01 12 130927080 130927080 C T RIMBP2 Missense_Mutation p.G256S 0.05 tolerated(0.63) benign(0.003) TCGA-44-6147-01 12 34179553 34179553 A T ALG10 Silent p.P375P 0.12 TCGA-44-6147-01 12 41323804 41323804 C A CNTN1 Silent p.R235R 0.06 TCGA-44-6147-01 12 55421051 55421051 C G NEUROD4 Silent p.S276S 0.05 TCGA-44-6147-01 13 36382450 36382450 C A DCLK1 Missense_Mutation p.D592Y 0.10 deleterious(0) probably_damaging(0.934) TCGA-44-6147-01 14 20248934 20248934 G T OR4M1 Silent p.G151G 0.24 TCGA-44-6147-01 14 25044575 25044575 G T CTSG Silent p.P33P 0.17 TCGA-44-6147-01 14 44973895 44973895 C A FSCB Missense_Mutation p.A766S 0.21 deleterious(0.02) unknown(0) TCGA-44-6147-01 14 44973896 44973896 C A FSCB Silent p.V765V 0.21 TCGA-44-6147-01 14 76045408 76045408 C A FLVCR2 Silent p.P31P 0.20 TCGA-44-6147-01 15 29409437 29409437 C A APBA2 3'UTR 0.21 TCGA-44-6147-01 15 40660665 40660665 C A DISP2 Silent p.G784G 0.08 TCGA-44-6147-01 16 15026684 15026684 G C NPIPA1 5'Flank 0.06 TCGA-44-6147-01 16 20548643 20548643 T G ACSM2B Missense_Mutation p.K557N 0.07 deleterious(0) probably_damaging(0.96) TCGA-44-6147-01 16 29874031 29874031 C T CDIPT Silent p.R18R 0.07 TCGA-44-6147-01 16 3075738 3075738 C G THOC6 Silent p.L23L 0.05 TCGA-44-6147-01 16 31734594 31734594 A T ZNF720 Missense_Mutation p.K49M 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-44-6147-01 16 67328886 67328886 C T KCTD19 Missense_Mutation p.E489K 0.11 tolerated(0.05) benign(0.146) TCGA-44-6147-01 16 70012166 70012166 G A RP11-419C5.2 RNA 0.11 TCGA-44-6147-01 16 74339302 74339302 G A PSMD7 Missense_Mutation p.A216T 0.10 tolerated(0.4) benign(0.022) TCGA-44-6147-01 16 86613358 86613358 C A FOXL1 Missense_Mutation p.H343Q 0.11 tolerated(0.05) benign(0.018) TCGA-44-6147-01 17 34942353 34942353 G T GGNBP2 Missense_Mutation p.D484Y 0.08 deleterious(0) probably_damaging(0.973) TCGA-44-6147-01 17 3984731 3984731 T C ZZEF1 Missense_Mutation p.K923R 0.07 deleterious(0.02) benign(0.017) TCGA-44-6147-01 17 55478805 55478805 A C MSI2 Silent p.V126V 0.08 TCGA-44-6147-01 17 58678193 58678193 G T PPM1D Missense_Mutation p.A140S 0.12 tolerated(0.51) benign(0.167) TCGA-44-6147-01 17 6021387 6021387 T A WSCD1 Silent p.I418I 0.10 TCGA-44-6147-01 17 67119514 67119514 G A ABCA6 Silent p.F434F 0.07 TCGA-44-6147-01 17 7579358 7579358 C A TP53 Missense_Mutation p.R110L 0.10 deleterious(0.04) possibly_damaging(0.898) TCGA-44-6147-01 17 76705803 76705803 G T CYTH1 Missense_Mutation p.L12M 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-44-6147-01 17 78176159 78176159 G A CARD14 Missense_Mutation p.R720H 0.08 tolerated(0.27) benign(0.003) TCGA-44-6147-01 18 23598245 23598245 G - SS18 3'UTR 0.09 TCGA-44-6147-01 18 32886416 32886416 A G ZNF271 RNA 0.20 TCGA-44-6147-01 19 22940301 22940301 G A ZNF99 Missense_Mutation p.L804F 0.06 deleterious(0.05) probably_damaging(1) TCGA-44-6147-01 19 33370117 33370117 C A CEP89 Missense_Mutation p.G768V 0.10 deleterious(0) benign(0.062) TCGA-44-6147-01 19 33370118 33370118 C A CEP89 Missense_Mutation p.G768C 0.10 deleterious(0) probably_damaging(0.927) TCGA-44-6147-01 19 33370119 33370119 G A CEP89 Silent p.D767D 0.10 TCGA-44-6147-01 19 35842897 35842897 G A FFAR1 Missense_Mutation p.G148E 0.05 tolerated(0.13) benign(0.067) TCGA-44-6147-01 19 43439665 43439665 C A PSG7 Silent p.L107L 0.04 TCGA-44-6147-01 19 44680542 44680542 C T ZNF226 Missense_Mutation p.S376F 0.12 deleterious(0.02) probably_damaging(0.966) TCGA-44-6147-01 19 46196733 46196733 A T QPCTL Silent p.P90P 0.04 TCGA-44-6147-01 19 46289666 46289666 C G DMWD Missense_Mutation p.R363P 0.05 deleterious(0) possibly_damaging(0.729) TCGA-44-6147-01 19 47920532 47920532 C A MEIS3 Missense_Mutation p.A30S 0.08 tolerated(0.88) benign(0.004) TCGA-44-6147-01 19 7075037 7075037 G - ZNF557 5'UTR 0.11 TCGA-44-6147-01 19 9226302 9226302 G C OR7G1 Silent p.L46L 0.06 TCGA-44-6147-01 1 10703261 10703261 G A CASZ1 Missense_Mutation p.R1326W 0.07 deleterious(0) probably_damaging(0.998) TCGA-44-6147-01 1 117559956 117559956 G T CD101 Missense_Mutation p.W491C 0.05 tolerated(0.11) possibly_damaging(0.886) TCGA-44-6147-01 1 117559957 117559957 G T CD101 Missense_Mutation p.A492S 0.05 tolerated(0.17) benign(0.11) TCGA-44-6147-01 1 118494942 118494942 C T WDR3 Missense_Mutation p.P643S 0.10 tolerated(0.08) benign(0.089) TCGA-44-6147-01 1 12854181 12854181 A G PRAMEF1 Silent p.A135A 0.04 TCGA-44-6147-01 1 152279939 152279939 C A FLG Nonsense_Mutation p.G2475* 0.13 TCGA-44-6147-01 1 152732100 152732100 G T KPRP Silent p.P12P 0.20 TCGA-44-6147-01 1 177199216 177199216 T C BRINP2 Silent p.A68A 0.08 TCGA-44-6147-01 1 186106740 186106740 G TT HMCN1 Frame_Shift_Ins p.G4565Lfs*17 0.23 TCGA-44-6147-01 1 201044651 201044651 G A CACNA1S Silent p.Y640Y 0.10 TCGA-44-6147-01 1 203652429 203652429 C A ATP2B4 Silent p.L32L 0.15 TCGA-44-6147-01 1 23520467 23520467 G T HTR1D Silent p.T82T 0.05 TCGA-44-6147-01 1 237664020 237664020 C A RYR2 Missense_Mutation p.A738D 0.03 benign(0.026) TCGA-44-6147-01 1 24484070 24484070 C A IFNLR1 Missense_Mutation p.R371S 0.07 tolerated(0.51) benign(0.001) TCGA-44-6147-01 1 248402835 248402835 G A OR2M4 Missense_Mutation p.C202Y 0.17 deleterious(0.02) possibly_damaging(0.58) TCGA-44-6147-01 1 34209109 34209109 G A CSMD2 Silent p.L609L 0.09 TCGA-44-6147-01 1 41285929 41285929 C T KCNQ4 Silent p.I346I 0.12 TCGA-44-6147-01 1 76345780 76345780 A G MSH4 Missense_Mutation p.I575V 0.10 tolerated(0.08) benign(0.088) TCGA-44-6147-01 1 9323676 9323676 A T H6PD Missense_Mutation p.N375I 0.09 deleterious(0) possibly_damaging(0.869) TCGA-44-6147-01 1 99771298 99771298 G T LPPR4 Missense_Mutation p.D342Y 0.05 deleterious(0) benign(0.001) TCGA-44-6147-01 20 10393994 10394007 TTGTACACACGTAA - MKKS Frame_Shift_Del p.Y53Lfs*33 0.10 TCGA-44-6147-01 20 34519298 34519298 G C PHF20 Missense_Mutation p.Q744H 0.27 tolerated(0.2) probably_damaging(0.998) TCGA-44-6147-01 20 62729693 62729693 C A OPRL1 Nonsense_Mutation p.C218* 0.13 TCGA-44-6147-01 21 15872985 15872985 C A SAMSN1 Silent p.V279V 0.08 TCGA-44-6147-01 21 39087237 39087237 G T KCNJ6 Missense_Mutation p.R75S 0.09 deleterious(0) probably_damaging(0.995) TCGA-44-6147-01 21 45978487 45978487 C A KRTAP10-3 Missense_Mutation p.A38S 0.08 deleterious(0.01) unknown(0) TCGA-44-6147-01 22 30782677 30782677 C A RNF215 Missense_Mutation p.E119D 0.06 tolerated(0.14) benign(0.004) TCGA-44-6147-01 22 37329941 37329941 G T CSF2RB Missense_Mutation p.R407M 0.10 tolerated(0.08) benign(0.028) TCGA-44-6147-01 2 105859448 105859448 C A GPR45 3'UTR 0.08 TCGA-44-6147-01 2 128347753 128347753 C A MYO7B Nonsense_Mutation p.C647* 0.10 TCGA-44-6147-01 2 183948268 183948268 C T DUSP19 Silent p.L87L 0.08 TCGA-44-6147-01 2 207170978 207170978 T A ZDBF2 Missense_Mutation p.S576T 0.21 deleterious(0.01) possibly_damaging(0.481) TCGA-44-6147-01 2 210557723 210557723 G T MAP2 Nonsense_Mutation p.E277* 0.06 TCGA-44-6147-01 2 37376053 37376053 T A EIF2AK2 5'UTR 0.15 TCGA-44-6147-01 2 73676099 73676099 G T ALMS1 Missense_Mutation p.E814D 0.08 benign(0.128) TCGA-44-6147-01 2 89326709 89326709 C A IGKV3-11 Missense_Mutation p.D102Y 0.10 deleterious(0) probably_damaging(1) TCGA-44-6147-01 3 126202291 126202291 C G UROC1 Missense_Mutation p.G664A 0.22 deleterious(0) probably_damaging(0.996) TCGA-44-6147-01 3 147106605 147106605 C T ZIC4 3'UTR 0.11 TCGA-44-6147-01 3 156234123 156234123 G A KCNAB1 Silent p.G310G 0.12 TCGA-44-6147-01 3 168802634 168802634 G C MECOM 3'UTR 0.16 TCGA-44-6147-01 3 36779750 36779750 C A DCLK3 Missense_Mutation p.G134V 0.07 tolerated(0.09) benign(0.411) TCGA-44-6147-01 3 43743969 43743969 G A ABHD5 Silent p.V132V 0.12 TCGA-44-6147-01 3 6903372 6903372 G C GRM7 Silent p.V99V 0.14 TCGA-44-6147-01 3 77629248 77629248 G A ROBO2 Missense_Mutation p.E843K 0.11 tolerated(0.42) benign(0.292) TCGA-44-6147-01 3 9726311 9726311 G T MTMR14 Missense_Mutation p.R336L 0.09 deleterious(0) possibly_damaging(0.897) TCGA-44-6147-01 4 110972677 110972677 C G ELOVL6 Missense_Mutation p.Q205H 0.04 deleterious(0) probably_damaging(1) TCGA-44-6147-01 4 114278606 114278606 C A ANK2 Silent p.T2944T 0.13 TCGA-44-6147-01 4 189068534 189068534 G T TRIML1 3'UTR 0.15 TCGA-44-6147-01 4 75937931 75937931 G A PARM1 Missense_Mutation p.G114S 0.09 tolerated(0.94) benign(0.001) TCGA-44-6147-01 5 121487887 121487887 C A ZNF474 Missense_Mutation p.L68I 0.07 tolerated(0.19) benign(0.11) TCGA-44-6147-01 5 138118888 138118888 A T CTNNA1 Missense_Mutation p.N43I 0.08 tolerated(0.2) benign(0.353) TCGA-44-6147-01 5 140203586 140203586 C A PCDHA5 Missense_Mutation p.S742R 0.06 deleterious_low_confidence(0.01) benign(0.238) TCGA-44-6147-01 5 140220966 140220966 C A PCDHA8 Silent p.L20L 0.07 TCGA-44-6147-01 5 140581504 140581504 G T PCDHB11 Silent p.A719A 0.07 TCGA-44-6147-01 5 140615910 140615910 A G PCDHB18 RNA 0.11 TCGA-44-6147-01 5 150509007 150509007 G A ANXA6 Silent p.F293F 0.15 TCGA-44-6147-01 5 176008567 176008567 T A CDHR2 Missense_Mutation p.V681D 0.14 deleterious(0) probably_damaging(0.995) TCGA-44-6147-01 5 177715330 177715330 A G COL23A1 Missense_Mutation p.Y146H 0.08 tolerated(0.06) unknown(0) TCGA-44-6147-01 5 179301942 179301942 C T TBC1D9B Missense_Mutation p.G716S 0.16 tolerated(1) benign(0.002) TCGA-44-6147-01 5 31299636 31299636 C A CDH6 Missense_Mutation p.Q237K 0.13 tolerated(0.05) benign(0.151) TCGA-44-6147-01 5 58147149 58147149 C T RAB3C Missense_Mutation p.P219S 0.11 tolerated(0.12) benign(0.007) TCGA-44-6147-01 6 134638606 134638606 C T SGK1 5'UTR 0.09 TCGA-44-6147-01 6 146673528 146673528 G T GRM1 Missense_Mutation p.K443N 0.04 tolerated(0.32) benign(0.219) TCGA-44-6147-01 6 28541214 28541214 T A SCAND3 Missense_Mutation p.S818C 0.14 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-44-6147-01 6 31935558 31935558 G T SKIV2L Missense_Mutation p.D884Y 0.12 deleterious(0.03) benign(0.325) TCGA-44-6147-01 6 47647951 47647951 T A GPR111 Missense_Mutation p.W206R 0.08 tolerated(0.74) benign(0) TCGA-44-6147-01 6 49582478 49582478 C A RHAG Silent p.T243T 0.09 TCGA-44-6147-01 6 54805254 54805254 G T FAM83B Missense_Mutation p.W495C 0.05 tolerated(0.06) benign(0.06) TCGA-44-6147-01 6 70042864 70042864 A G BAI3 Missense_Mutation p.D1051G 0.08 deleterious(0) probably_damaging(0.997) TCGA-44-6147-01 7 100686537 100686537 C A MUC17 Missense_Mutation p.T3947N 0.11 benign(0.253) TCGA-44-6147-01 7 107692568 107692568 G T LAMB4 Missense_Mutation p.S1297Y 0.09 deleterious(0.03) benign(0.01) TCGA-44-6147-01 7 108119758 108119758 T C PNPLA8 Silent p.P648P 0.12 TCGA-44-6147-01 7 117400700 117400700 A C CTTNBP2 Missense_Mutation p.D987E 0.05 tolerated(0.74) benign(0.002) TCGA-44-6147-01 7 129939236 129939236 G T CPA4 Missense_Mutation p.D93Y 0.08 deleterious(0) probably_damaging(0.928) TCGA-44-6147-01 7 133622733 133622733 A T EXOC4 Missense_Mutation p.D706V 0.09 tolerated(0.1) benign(0.19) TCGA-44-6147-01 7 141730170 141730170 G T MGAM Missense_Mutation p.Q410H 0.11 deleterious(0) probably_damaging(0.995) TCGA-44-6147-01 7 142008863 142008863 C G TRBV3-1 Missense_Mutation p.S112R 0.06 deleterious(0) probably_damaging(0.999) TCGA-44-6147-01 7 142510501 142510501 C A TRBV30 Silent p.P35P 0.15 TCGA-44-6147-01 7 157926709 157926709 G A PTPRN2 Missense_Mutation p.H406Y 0.08 tolerated(1) benign(0.002) TCGA-44-6147-01 7 37780032 37780032 G T GPR141 Missense_Mutation p.D13Y 0.07 deleterious(0.01) benign(0.311) TCGA-44-6147-01 7 37988642 37988642 C G EPDR1 Missense_Mutation p.A157G 0.15 tolerated(0.1) benign(0.028) TCGA-44-6147-01 7 55249005 55249005 G T EGFR Missense_Mutation p.S768I 0.11 deleterious(0) probably_damaging(1) TCGA-44-6147-01 7 55249007 55249007 G T EGFR Missense_Mutation p.V769L 0.11 tolerated(0.17) probably_damaging(0.999) TCGA-44-6147-01 7 75617466 75617466 C T POR 3'Flank 0.17 TCGA-44-6147-01 7 7629038 7629038 A T MIOS Missense_Mutation p.L629F 0.14 deleterious(0) probably_damaging(0.967) TCGA-44-6147-01 7 98498314 98498314 T - TRRAP Frame_Shift_Del p.L291* 0.09 TCGA-44-6147-01 8 113323246 113323246 C A CSMD3 Missense_Mutation p.G2616W 0.26 deleterious(0) probably_damaging(1) TCGA-44-6147-01 8 139611019 139611019 C T COL22A1 Silent p.E1436E 0.33 TCGA-44-6147-01 8 143427140 143427140 C A TSNARE1 Missense_Mutation p.A68S 0.40 tolerated_low_confidence(0.14) benign(0.321) TCGA-44-6147-01 8 41572528 41572528 A T ANK1 Missense_Mutation p.L589Q 0.06 deleterious(0) probably_damaging(1) TCGA-44-6147-01 9 125273566 125273566 C A OR1J2 Silent p.L162L 0.05 TCGA-44-6147-01 9 130198191 130198191 T G ZNF79 Silent p.L79L 0.05 TCGA-44-6147-01 9 135224674 135224674 G T SETX Missense_Mutation p.H48N 0.06 deleterious(0) probably_damaging(0.999) TCGA-44-6147-01 9 21217002 21217002 A T IFNA16 Missense_Mutation p.D101E 0.05 tolerated(0.3) benign(0.013) TCGA-44-6147-01 9 40702749 40702749 C A SPATA31A3 Missense_Mutation p.Q136K 0.04 tolerated(0.51) benign(0) TCGA-44-6147-01 X 102632569 102632569 C A NGFRAP1 Silent p.A50A 0.05 TCGA-44-6147-01 X 103495442 103495442 C T ESX1 Missense_Mutation p.D230N 0.05 tolerated(0.11) possibly_damaging(0.811) TCGA-44-6147-01 X 107978288 107978288 C A IRS4 Silent p.P429P 0.07 TCGA-44-6147-01 X 19031921 19031921 G T GPR64 Missense_Mutation p.P328T 0.05 tolerated(0.28) benign(0.001) TCGA-44-6147-01 X 39923743 39923743 G A BCOR Silent p.P1116P 0.05 TCGA-44-6147-01 X 54783839 54783839 G T ITIH6 Missense_Mutation p.P890T 0.13 tolerated(0.1) benign(0.036) TCGA-44-6147-01 X 63411898 63411898 C A AMER1 Silent p.L423L 0.05 TCGA-44-6147-01 X 76875878 76875878 T C ATRX Missense_Mutation p.N1753D 0.14 probably_damaging(0.999) TCGA-44-6147-01 X 77395088 77395088 C A TAF9B Silent p.A7A 0.06 TCGA-44-6147-01 X 79960208 79960208 C A BRWD3 Missense_Mutation p.R897M 0.06 deleterious(0.02) possibly_damaging(0.593) TCGA-44-6147-01 X 91090841 91090841 C A PCDH11X Missense_Mutation p.A113D 0.11 deleterious(0.02) probably_damaging(0.995) TCGA-44-6147-01 X 99955913 99955913 C G SYTL4 Missense_Mutation p.Q173H 0.05 tolerated(0.58) possibly_damaging(0.503) TCGA-44-6148-01 10 70679718 70679718 T C DDX50 Missense_Mutation p.M407T 0.04 tolerated(0.2) benign(0.01) TCGA-44-6148-01 11 107299527 107299530 AGCA - CWF19L2 Frame_Shift_Del p.F476Lfs*12 0.14 TCGA-44-6148-01 1 155707980 155707980 T C DAP3 Missense_Mutation p.F382L 0.09 tolerated(0.06) possibly_damaging(0.836) TCGA-44-6148-01 1 156146629 156146629 A T SEMA4A Silent p.A709A 0.09 TCGA-44-6148-01 2 131521595 131521595 C T AMER3 Silent p.V650V 0.24 TCGA-44-6148-01 2 237172866 237172866 C T ASB18 Silent p.T41T 0.07 TCGA-44-6148-01 2 26416532 26416532 G C HADHA Missense_Mutation p.A600G 0.12 tolerated(0.12) possibly_damaging(0.875) TCGA-44-6148-01 3 51982371 51982371 G A PARP3 Missense_Mutation p.V500M 0.20 tolerated(0.15) benign(0.107) TCGA-44-6148-01 8 106813779 106813779 C A ZFPM2 Missense_Mutation p.P490H 0.15 deleterious(0) probably_damaging(0.999) TCGA-44-6774-01 10 120877099 120877099 T A FAM45A Missense_Mutation p.I134K 0.15 deleterious(0.05) benign(0.365) TCGA-44-6774-01 10 135203244 135203244 G T PAOX Missense_Mutation p.G462V 0.11 tolerated(0.17) benign(0.111) TCGA-44-6774-01 10 23244787 23244787 C A ARMC3 Missense_Mutation p.T73N 0.13 tolerated(0.3) possibly_damaging(0.616) TCGA-44-6774-01 10 23287230 23287230 C A ARMC3 Silent p.A443A 0.24 TCGA-44-6774-01 10 45941139 45941139 C T ALOX5 3'UTR 0.14 TCGA-44-6774-01 10 54074087 54074087 G A DKK1 5'UTR 0.19 TCGA-44-6774-01 10 71010090 71010090 C T HKDC1 Missense_Mutation p.R539W 0.09 deleterious(0) probably_damaging(0.999) TCGA-44-6774-01 10 95066741 95066741 C A MYOF Missense_Mutation p.K2055N 0.15 deleterious(0) probably_damaging(0.999) TCGA-44-6774-01 10 95126285 95126285 T C MYOF Missense_Mutation p.K873E 0.21 deleterious(0.02) possibly_damaging(0.766) TCGA-44-6774-01 10 95661109 95661109 G T SLC35G1 Missense_Mutation p.M320I 0.09 tolerated(0.07) benign(0.285) TCGA-44-6774-01 10 96333850 96333850 A G HELLS Missense_Mutation p.K204R 0.16 tolerated(0.2) benign(0.052) TCGA-44-6774-01 11 102239138 102239138 G T BIRC2 Missense_Mutation p.V409L 0.13 deleterious(0) benign(0.355) TCGA-44-6774-01 11 134051057 134051057 C A NCAPD3 Missense_Mutation p.G825V 0.27 tolerated(0.1) benign(0.033) TCGA-44-6774-01 11 18745745 18745745 G T IGSF22 Missense_Mutation p.H13Q 0.18 deleterious_low_confidence(0) benign(0.023) TCGA-44-6774-01 11 19735466 19735466 G T NAV2 Silent p.P75P 0.15 TCGA-44-6774-01 11 26664731 26664731 T C ANO3 Silent p.L760L 0.20 TCGA-44-6774-01 11 36598045 36598045 A C RAG1 3'UTR 0.29 TCGA-44-6774-01 11 45275883 45275883 T C SYT13 Missense_Mutation p.K161R 0.26 tolerated(0.13) benign(0.018) TCGA-44-6774-01 11 45924235 45924235 G T MAPK8IP1 Missense_Mutation p.R306L 0.12 deleterious(0) possibly_damaging(0.619) TCGA-44-6774-01 11 4703764 4703764 G A OR51E2 Missense_Mutation p.L60F 0.18 tolerated(0.14) benign(0.004) TCGA-44-6774-01 11 48510784 48510784 G T OR4A47 Missense_Mutation p.W147L 0.17 tolerated_low_confidence(0.05) benign(0.042) TCGA-44-6774-01 11 48510785 48510785 G T OR4A47 Missense_Mutation p.W147C 0.16 tolerated_low_confidence(0.06) benign(0.098) TCGA-44-6774-01 11 49175441 49175441 C A FOLH1 Missense_Mutation p.A643S 0.11 tolerated(0.06) benign(0.377) TCGA-44-6774-01 11 55579627 55579627 G T OR5L1 Missense_Mutation p.G229C 0.19 tolerated(0.06) benign(0) TCGA-44-6774-01 11 62490080 62490080 C A HNRNPUL2 Missense_Mutation p.C363F 0.11 deleterious(0) probably_damaging(0.998) TCGA-44-6774-01 11 6260974 6260974 G T CNGA4 Silent p.T75T 0.21 TCGA-44-6774-01 11 6415869 6415869 G C SMPD1 3'UTR 0.20 TCGA-44-6774-01 11 76372209 76372209 C A LRRC32 Missense_Mutation p.R143L 0.20 tolerated(0.53) benign(0.013) TCGA-44-6774-01 11 7981773 7981773 G T NLRP10 Nonsense_Mutation p.Y462* 0.14 TCGA-44-6774-01 11 9438673 9438673 T C IPO7 Missense_Mutation p.V235A 0.17 deleterious(0) benign(0.297) TCGA-44-6774-01 11 9759806 9759806 G - SWAP70 Frame_Shift_Del p.R376Pfs*52 0.12 TCGA-44-6774-01 12 10241744 10241744 G C CLEC1A Missense_Mutation p.L65V 0.08 deleterious(0) probably_damaging(0.991) TCGA-44-6774-01 12 12311984 12311984 C A LRP6 Missense_Mutation p.R857L 0.17 deleterious(0) probably_damaging(1) TCGA-44-6774-01 12 124362333 124362333 G T DNAH10 Silent p.T2632T 0.14 TCGA-44-6774-01 12 130921572 130921572 C A RIMBP2 Missense_Mutation p.A624S 0.13 tolerated(0.65) benign(0.002) TCGA-44-6774-01 12 131293251 131293251 T A STX2 Splice_Site p.X94_splice 0.19 TCGA-44-6774-01 12 2714893 2714893 G T CACNA1C Missense_Mutation p.V1053L 0.14 tolerated(0.17) benign(0.032) TCGA-44-6774-01 12 29669312 29669312 G T TMTC1 Silent p.A759A 0.17 TCGA-44-6774-01 12 31633191 31633191 T A DENND5B Splice_Site p.X80_splice 0.38 TCGA-44-6774-01 12 51458343 51458343 A C CSRNP2 Missense_Mutation p.I273S 0.22 deleterious(0) probably_damaging(0.994) TCGA-44-6774-01 12 5603979 5603979 C A NTF3 Missense_Mutation p.P213Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-44-6774-01 12 70948941 70948941 A T PTPRB Missense_Mutation p.D1714E 0.05 tolerated(0.28) benign(0.015) TCGA-44-6774-01 12 72056983 72056983 C A ZFC3H1 Silent p.R136R 0.12 TCGA-44-6774-01 12 78444565 78444565 C A NAV3 Missense_Mutation p.D718E 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-44-6774-01 12 90028574 90028574 C A ATP2B1 Missense_Mutation p.K256N 0.18 tolerated(0.11) possibly_damaging(0.503) TCGA-44-6774-01 12 91539800 91539800 T A DCN 3'UTR 0.11 TCGA-44-6774-01 13 102047695 102047695 T A NALCN Missense_Mutation p.I44F 0.14 tolerated(0.25) benign(0.001) TCGA-44-6774-01 13 21557438 21557438 C A LATS2 Missense_Mutation p.G803C 0.17 deleterious(0) probably_damaging(0.993) TCGA-44-6774-01 13 23853548 23853548 G T SGCG Missense_Mutation p.D146Y 0.21 deleterious(0) possibly_damaging(0.794) TCGA-44-6774-01 13 46425646 46425646 G T SIAH3 Missense_Mutation p.P40H 0.12 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-44-6774-01 13 47466725 47466725 C A HTR2A Missense_Mutation p.G138V 0.22 deleterious(0.01) probably_damaging(0.97) TCGA-44-6774-01 13 53286963 53286963 A T LECT1 Silent p.L170L 0.23 TCGA-44-6774-01 13 99908075 99908075 G T GPR18 Missense_Mutation p.P18T 0.21 tolerated(0.06) possibly_damaging(0.642) TCGA-44-6774-01 14 100604129 100604129 C G EVL Missense_Mutation p.P362A 0.14 deleterious(0.02) benign(0.157) TCGA-44-6774-01 14 101200835 101200835 C T DLK1 Missense_Mutation p.P252S 0.17 tolerated(0.62) benign(0.001) TCGA-44-6774-01 14 105419467 105419467 T C AHNAK2 Missense_Mutation p.K774R 0.14 probably_damaging(0.99) TCGA-44-6774-01 14 20248962 20248962 G T OR4M1 Missense_Mutation p.A161S 0.11 tolerated(0.37) possibly_damaging(0.73) TCGA-44-6774-01 14 24435560 24435560 G C DHRS4 Silent p.L200L 0.07 TCGA-44-6774-01 14 42355863 42355863 G A LRFN5 Missense_Mutation p.G12D 0.16 deleterious(0.01) benign(0.258) TCGA-44-6774-01 14 44975985 44975985 G T FSCB Missense_Mutation p.T69N 0.17 deleterious(0) probably_damaging(0.952) TCGA-44-6774-01 14 45639873 45639873 G - FANCM Frame_Shift_Del p.D696Tfs*8 0.16 TCGA-44-6774-01 14 47120853 47120853 G T RPL10L Silent p.A29A 0.10 TCGA-44-6774-01 14 52178252 52178252 A - FRMD6 Frame_Shift_Del p.R241Gfs*7 0.11 TCGA-44-6774-01 14 63447817 63447817 T A KCNH5 Nonsense_Mutation p.K239* 0.12 TCGA-44-6774-01 14 63784422 63784422 G T GPHB5 RNA 0.16 TCGA-44-6774-01 14 64516346 64516346 G C SYNE2 Missense_Mutation p.L2465F 0.13 probably_damaging(0.999) TCGA-44-6774-01 14 80668677 80668677 G T DIO2 3'Flank 0.10 TCGA-44-6774-01 15 101114229 101114229 C A LINS Missense_Mutation p.M283I 0.13 tolerated(0.18) benign(0.002) TCGA-44-6774-01 15 40586546 40586546 A G PLCB2 Missense_Mutation p.M661T 0.19 deleterious(0) probably_damaging(0.984) TCGA-44-6774-01 15 43641346 43641346 G A ADAL Intron 0.25 TCGA-44-6774-01 15 45059693 45059693 C T TRIM69 Missense_Mutation p.P409L 0.05 deleterious(0) probably_damaging(1) TCGA-44-6774-01 15 51991556 51991556 G C SCG3 Missense_Mutation p.K342N 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-6774-01 15 65847232 65847232 A T PTPLAD1 Silent p.G46G 0.12 TCGA-44-6774-01 15 74573106 74573106 C T CCDC33 Silent p.G329G 0.16 TCGA-44-6774-01 15 74654222 74654222 C A CYP11A1 Intron 0.18 TCGA-44-6774-01 15 77471208 77471208 C A PEAK1 Nonsense_Mutation p.E1021* 0.11 TCGA-44-6774-01 15 85448795 85448795 G T SLC28A1 Missense_Mutation p.G210V 0.20 deleterious(0) probably_damaging(1) TCGA-44-6774-01 15 85487830 85487830 C T SLC28A1 Missense_Mutation p.S566F 0.08 deleterious(0.02) probably_damaging(0.951) TCGA-44-6774-01 16 10031860 10031860 G A GRIN2A Silent p.Y321Y 0.13 TCGA-44-6774-01 16 15851756 15851756 G T MYH11 Silent p.R508R 0.13 TCGA-44-6774-01 16 18602624 18602624 G A ABCC6P1 RNA 0.14 TCGA-44-6774-01 16 18602625 18602625 C T ABCC6P1 RNA 0.14 TCGA-44-6774-01 16 31476036 31476036 A T ARMC5 Silent p.P564P 0.16 TCGA-44-6774-01 16 3255074 3255074 G T OR1F1 Silent p.V276V 0.14 TCGA-44-6774-01 16 4910738 4910738 C T UBN1 Silent p.L249L 0.18 TCGA-44-6774-01 16 4940293 4940293 G C PPL Missense_Mutation p.F735L 0.11 tolerated(0.05) benign(0.04) TCGA-44-6774-01 16 56704907 56704907 G C MT1H 3'UTR 0.19 TCGA-44-6774-01 16 70190519 70190519 G T PDPR Missense_Mutation p.G793W 0.16 deleterious(0) probably_damaging(1) TCGA-44-6774-01 16 70599102 70599102 C T SF3B3 Silent p.I866I 0.26 TCGA-44-6774-01 16 70977730 70977730 C T HYDIN Silent p.L2218L 0.17 TCGA-44-6774-01 16 71570875 71570875 C A CHST4 Silent p.R99R 0.28 TCGA-44-6774-01 16 8995984 8995984 C A USP7 Nonsense_Mutation p.E668* 0.08 TCGA-44-6774-01 17 10296216 10296216 G A MYH8 Missense_Mutation p.R1799C 0.24 deleterious(0.01) benign(0.178) TCGA-44-6774-01 17 10443964 10443964 C A MYH2 Missense_Mutation p.G319W 0.20 deleterious(0) possibly_damaging(0.828) TCGA-44-6774-01 17 11592912 11592912 T A DNAH9 Missense_Mutation p.L1258Q 0.33 possibly_damaging(0.583) TCGA-44-6774-01 17 18539621 18539621 G T TBC1D28 3'UTR 0.60 TCGA-44-6774-01 17 18907267 18907267 C T FAM83G Missense_Mutation p.E30K 0.26 deleterious(0.02) possibly_damaging(0.515) TCGA-44-6774-01 17 25630509 25630509 T C WSB1 Missense_Mutation p.I109T 0.20 tolerated(0.14) probably_damaging(0.983) TCGA-44-6774-01 17 25631888 25631888 G T WSB1 Silent p.V187V 0.19 TCGA-44-6774-01 17 29622582 29622582 G T OMG Silent p.T256T 0.11 TCGA-44-6774-01 17 3119679 3119679 G T OR1A1 Missense_Mutation p.M255I 0.16 tolerated(1) benign(0.075) TCGA-44-6774-01 17 33513323 33513323 C A UNC45B Silent p.T847T 0.16 TCGA-44-6774-01 17 33520803 33520803 G T SLC35G3 Missense_Mutation p.P175H 0.17 deleterious(0) probably_damaging(0.914) TCGA-44-6774-01 17 34432678 34432678 G T CCL4 Missense_Mutation p.E84D 0.12 tolerated(0.11) benign(0.029) TCGA-44-6774-01 17 41143758 41143758 G T RUNDC1 3'UTR 0.21 TCGA-44-6774-01 17 41738726 41738726 G T MEOX1 Nonsense_Mutation p.Y59* 0.13 TCGA-44-6774-01 17 44408380 44408380 C A LRRC37A Missense_Mutation p.S1246Y 0.39 deleterious(0) possibly_damaging(0.89) TCGA-44-6774-01 17 51901012 51901012 G T KIF2B Silent p.L206L 0.13 TCGA-44-6774-01 17 57288024 57288024 C G SMG8 Missense_Mutation p.F204L 0.17 tolerated(0.06) possibly_damaging(0.649) TCGA-44-6774-01 17 62018615 62018615 C A SCN4A Missense_Mutation p.C1676F 0.20 deleterious(0.02) benign(0.091) TCGA-44-6774-01 17 6703489 6703489 G A TEKT1 Silent p.L372L 0.11 TCGA-44-6774-01 17 72368403 72368403 G T GPR142 Silent p.R351R 0.24 TCGA-44-6774-01 17 72527477 72527477 G T CD300LB Missense_Mutation p.P42T 0.21 tolerated(0.05) probably_damaging(0.921) TCGA-44-6774-01 17 72537606 72537606 G T CD300C 3'UTR 0.18 TCGA-44-6774-01 17 72537607 72537607 G T CD300C 3'UTR 0.19 TCGA-44-6774-01 17 7577548 7577548 C A TP53 Missense_Mutation p.G245C 0.36 deleterious(0) probably_damaging(1) TCGA-44-6774-01 17 78023992 78023992 A T CCDC40 Missense_Mutation p.S357C 0.23 tolerated(1) benign(0.001) TCGA-44-6774-01 17 8219371 8219371 C T ARHGEF15 Missense_Mutation p.R537W 0.17 deleterious(0) probably_damaging(1) TCGA-44-6774-01 17 8221720 8221720 A T ARHGEF15 Missense_Mutation p.T574S 0.10 deleterious(0.02) probably_damaging(0.95) TCGA-44-6774-01 18 31323602 31323602 C G ASXL3 Missense_Mutation p.L1264V 0.19 probably_damaging(0.996) TCGA-44-6774-01 18 32822650 32822650 G C ZNF397 Missense_Mutation p.Q72H 0.14 deleterious(0.02) benign(0.065) TCGA-44-6774-01 18 40853633 40853633 A T SYT4 Missense_Mutation p.I254N 0.11 deleterious(0) probably_damaging(1) TCGA-44-6774-01 18 61166417 61166417 G A SERPINB5 Missense_Mutation p.S211N 0.12 tolerated(0.11) benign(0.001) TCGA-44-6774-01 18 61259614 61259614 C A SERPINB13 Missense_Mutation p.F86L 0.16 tolerated(0.09) benign(0.046) TCGA-44-6774-01 18 61259708 61259708 C T SERPINB13 Nonsense_Mutation p.Q118* 0.16 TCGA-44-6774-01 18 67872934 67872934 C T RTTN 5'UTR 0.08 TCGA-44-6774-01 18 67992886 67992886 G T SOCS6 Nonsense_Mutation p.G328* 0.18 TCGA-44-6774-01 19 10444193 10444193 C T RAVER1 Silent p.G14G 0.12 TCGA-44-6774-01 19 1796145 1796145 C - ATP8B3 Frame_Shift_Del p.E625Rfs*10 0.25 TCGA-44-6774-01 19 23159803 23159803 C A ZNF728 Missense_Mutation p.Q112H 0.28 tolerated(0.15) benign(0.004) TCGA-44-6774-01 19 2852695 2852695 G T ZNF555 Missense_Mutation p.R211L 0.24 tolerated(0.64) possibly_damaging(0.574) TCGA-44-6774-01 19 35941665 35941665 G T FFAR2 3'UTR 0.20 TCGA-44-6774-01 19 37005408 37005408 C A ZNF260 Nonsense_Mutation p.E245* 0.18 TCGA-44-6774-01 19 39898874 39898874 G A ZFP36 Silent p.L178L 0.17 TCGA-44-6774-01 19 40520110 40520110 T A ZNF546 Missense_Mutation p.S311R 0.14 tolerated(0.33) possibly_damaging(0.713) TCGA-44-6774-01 19 45873524 45873524 C T ERCC2 Intron 0.26 TCGA-44-6774-01 19 50314895 50314895 T G FUZ Missense_Mutation p.D127A 0.03 deleterious(0.01) benign(0.051) TCGA-44-6774-01 19 53793473 53793473 T A BIRC8 Missense_Mutation p.K52M 0.19 deleterious(0.02) benign(0.075) TCGA-44-6774-01 19 54310879 54310879 G C NLRP12 Missense_Mutation p.L705V 0.24 deleterious(0) probably_damaging(0.998) TCGA-44-6774-01 19 54647235 54647235 G A CNOT3 Missense_Mutation p.E51K 0.19 deleterious(0) probably_damaging(0.994) TCGA-44-6774-01 19 56704299 56704299 C A ZSCAN5B Missense_Mutation p.E41D 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-44-6774-01 19 9061138 9061138 T C MUC16 Missense_Mutation p.I8770V 0.20 unknown(0) TCGA-44-6774-01 19 9074617 9074617 T A MUC16 Missense_Mutation p.T4277S 0.20 unknown(0) TCGA-44-6774-01 1 103355036 103355036 C - COL11A1 Frame_Shift_Del p.G1480Dfs*18 0.18 TCGA-44-6774-01 1 111773424 111773424 G A CHI3L2 Missense_Mutation p.G44E 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-44-6774-01 1 13001343 13001343 T C PRAMEF6 Missense_Mutation p.M114V 0.06 tolerated(0.15) benign(0.008) TCGA-44-6774-01 1 145473875 145473875 T A ANKRD34A Missense_Mutation p.S183T 0.17 tolerated(0.07) probably_damaging(0.956) TCGA-44-6774-01 1 152648743 152648743 C A LCE2C Silent p.R84R 0.22 TCGA-44-6774-01 1 16342123 16342123 C A HSPB7 Silent p.P155P 0.37 TCGA-44-6774-01 1 165370562 165370562 C A RXRG Missense_Mutation p.G444W 0.27 deleterious(0) probably_damaging(1) TCGA-44-6774-01 1 169510755 169510755 G T F5 Missense_Mutation p.S1191R 0.25 tolerated(0.07) possibly_damaging(0.804) TCGA-44-6774-01 1 175096160 175096160 C A TNN Missense_Mutation p.P995H 0.09 deleterious(0) probably_damaging(0.982) TCGA-44-6774-01 1 176915238 176915238 C A ASTN1 Missense_Mutation p.K691N 0.17 deleterious(0.02) benign(0.407) TCGA-44-6774-01 1 190068080 190068080 G C BRINP3 Missense_Mutation p.R457G 0.17 tolerated(0.35) benign(0.027) TCGA-44-6774-01 1 220406195 220406195 T C RAB3GAP2 Silent p.T42T 0.11 TCGA-44-6774-01 1 222736579 222736579 C A TAF1A Nonsense_Mutation p.G341* 0.16 TCGA-44-6774-01 1 22920043 22920043 C A EPHA8 Silent p.T489T 0.21 TCGA-44-6774-01 1 237656342 237656342 G T RYR2 Missense_Mutation p.G639V 0.20 benign(0.241) TCGA-44-6774-01 1 24840900 24840900 A T RCAN3 Missense_Mutation p.Q13L 0.14 tolerated_low_confidence(0.1) benign(0.06) TCGA-44-6774-01 1 248486947 248486947 G T OR2M7 Silent p.G308G 0.21 TCGA-44-6774-01 1 248487446 248487446 C A OR2M7 Missense_Mutation p.G142V 0.20 tolerated(0.26) benign(0.049) TCGA-44-6774-01 1 248616835 248616835 T C OR2T2 Missense_Mutation p.I246T 0.10 deleterious(0) benign(0.267) TCGA-44-6774-01 1 2524404 2524404 G T MMEL1 Silent p.G623G 0.13 TCGA-44-6774-01 1 31230519 31230519 G T LAPTM5 Missense_Mutation p.A25D 0.15 deleterious(0.01) possibly_damaging(0.894) TCGA-44-6774-01 1 53542969 53542969 G T PODN Missense_Mutation p.R278L 0.14 deleterious(0.04) benign(0.421) TCGA-44-6774-01 1 59247873 59247873 C - JUN Frame_Shift_Del p.N291Tfs*23 0.19 TCGA-44-6774-01 1 60505798 60505798 G A C1orf87 Silent p.L180L 0.22 TCGA-44-6774-01 1 62626589 62626589 G T INADL Silent p.L1796L 0.19 TCGA-44-6774-01 1 6680330 6680330 G T PHF13 Missense_Mutation p.Q203H 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-44-6774-01 1 82432281 82432281 G T LPHN2 Silent p.L762L 0.14 TCGA-44-6774-01 1 92554451 92554451 C T BTBD8 Nonsense_Mutation p.Q116* 0.12 TCGA-44-6774-01 20 16352333 16352333 T A KIF16B Missense_Mutation p.S1142C 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.669) TCGA-44-6774-01 20 18297153 18297153 G T ZNF133 Missense_Mutation p.R552M 0.14 deleterious(0.05) possibly_damaging(0.878) TCGA-44-6774-01 20 1895886 1895886 C A SIRPA Missense_Mutation p.P74Q 0.17 tolerated(0.28) benign(0.446) TCGA-44-6774-01 20 41306576 41306576 G C PTPRT Silent p.L361L 0.05 TCGA-44-6774-01 20 42815287 42815287 C A JPH2 Missense_Mutation p.G20V 0.25 deleterious(0.01) probably_damaging(0.945) TCGA-44-6774-01 20 42815288 42815288 C A JPH2 Missense_Mutation p.G20W 0.26 deleterious(0) probably_damaging(0.998) TCGA-44-6774-01 20 45633640 45633640 C A EYA2 Missense_Mutation p.T72K 0.18 deleterious(0) possibly_damaging(0.906) TCGA-44-6774-01 20 48600678 48600678 C T SNAI1 Nonsense_Mutation p.Q134* 0.23 TCGA-44-6774-01 20 51871779 51871779 G A TSHZ2 Silent p.L594L 0.16 TCGA-44-6774-01 20 51871780 51871780 G T TSHZ2 Missense_Mutation p.A595S 0.15 tolerated(0.69) benign(0.002) TCGA-44-6774-01 20 5958578 5958578 C T MCM8 Silent p.T484T 0.19 TCGA-44-6774-01 20 61528277 61528277 C A DIDO1 Missense_Mutation p.G554C 0.13 probably_damaging(0.959) TCGA-44-6774-01 20 62292695 62292695 G C RTEL1 Silent p.T49T 0.20 TCGA-44-6774-01 20 9374320 9374320 A T PLCB4 Missense_Mutation p.E470V 0.25 deleterious(0) probably_damaging(0.917) TCGA-44-6774-01 20 9438112 9438112 G C PLCB4 Silent p.T1004T 0.18 TCGA-44-6774-01 21 11029638 11029638 G T BAGE2 RNA 0.08 TCGA-44-6774-01 21 15561488 15561488 A T LIPI Nonsense_Mutation p.L121* 0.11 TCGA-44-6774-01 21 15872992 15872992 T C SAMSN1 Missense_Mutation p.N277S 0.14 deleterious(0.03) probably_damaging(0.911) TCGA-44-6774-01 21 27945291 27945291 G A CYYR1 5'UTR 0.21 TCGA-44-6774-01 21 30403014 30403014 G T USP16 Missense_Mutation p.D54Y 0.15 deleterious(0) probably_damaging(1) TCGA-44-6774-01 21 31812741 31812741 C G KRTAP15-1 Missense_Mutation p.S32R 0.16 tolerated(0.1) probably_damaging(0.944) TCGA-44-6774-01 21 47783460 47783460 G A PCNT Silent p.L740L 0.21 TCGA-44-6774-01 22 20922826 20922826 G T MED15 Missense_Mutation p.V354L 0.12 tolerated_low_confidence(0.28) unknown(0) TCGA-44-6774-01 22 21178643 21178643 C A PI4KA Missense_Mutation p.A143S 0.10 deleterious(0.04) probably_damaging(0.979) TCGA-44-6774-01 22 21343151 21343151 G T LZTR1 Missense_Mutation p.G195C 0.25 deleterious(0) probably_damaging(1) TCGA-44-6774-01 22 29737726 29737726 C A AP1B1 Silent p.R520R 0.15 TCGA-44-6774-01 22 33260992 33260992 C A SYN3 Splice_Site p.X208_splice 0.14 TCGA-44-6774-01 22 36587606 36587606 G C APOL4 Missense_Mutation p.I190M 0.29 deleterious(0.04) probably_damaging(0.923) TCGA-44-6774-01 22 39262426 39262426 C A CBX6 Missense_Mutation p.A343S 0.18 tolerated_low_confidence(0.4) benign(0.027) TCGA-44-6774-01 22 43821177 43821177 C A MPPED1 Missense_Mutation p.N62K 0.17 tolerated(0.71) benign(0.439) TCGA-44-6774-01 22 45959084 45959085 CG - FBLN1 Intron 0.07 TCGA-44-6774-01 2 108604753 108604753 G T SLC5A7 Missense_Mutation p.D48Y 0.14 deleterious(0) benign(0.319) TCGA-44-6774-01 2 109383771 109383771 G T RANBP2 Missense_Mutation p.R2259L 0.14 deleterious(0.01) probably_damaging(0.977) TCGA-44-6774-01 2 11732998 11732998 C T GREB1 Missense_Mutation p.A481V 0.17 tolerated(0.14) benign(0.015) TCGA-44-6774-01 2 125232346 125232346 A T CNTNAP5 Nonsense_Mutation p.K317* 0.24 TCGA-44-6774-01 2 135779380 135779380 G T MAP3K19 Missense_Mutation p.L15I 0.14 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-44-6774-01 2 141093256 141093256 C T LRP1B Missense_Mutation p.G4015D 0.25 probably_damaging(0.931) TCGA-44-6774-01 2 149840154 149840154 G T KIF5C Missense_Mutation p.Q530H 0.15 deleterious(0.01) benign(0.401) TCGA-44-6774-01 2 152487674 152487674 C A NEB Missense_Mutation p.A3201S 0.15 benign(0.351) TCGA-44-6774-01 2 176043042 176043042 C G ATP5G3 Missense_Mutation p.A135P 0.11 deleterious(0) probably_damaging(1) TCGA-44-6774-01 2 189859522 189859522 G T COL3A1 Missense_Mutation p.G474C 0.11 unknown(0) TCGA-44-6774-01 2 198265462 198265462 C A SF3B1 Missense_Mutation p.A899S 0.13 tolerated(0.07) probably_damaging(0.96) TCGA-44-6774-01 2 207460798 207460798 C A ADAM23 Nonsense_Mutation p.C757* 0.14 TCGA-44-6774-01 2 207630019 207630019 G T MDH1B 5'UTR 0.15 TCGA-44-6774-01 2 209142361 209142361 G T PIKFYVE Missense_Mutation p.R181L 0.21 deleterious(0) probably_damaging(1) TCGA-44-6774-01 2 211513216 211513216 C T CPS1 Missense_Mutation p.A1125V 0.15 deleterious(0.02) possibly_damaging(0.731) TCGA-44-6774-01 2 220422763 220422763 A G OBSL1 Missense_Mutation p.V1191A 0.12 tolerated(0.24) possibly_damaging(0.734) TCGA-44-6774-01 2 224462975 224462975 A T SCG2 Silent p.P342P 0.10 TCGA-44-6774-01 2 228205013 228205013 A T MFF Silent p.R145R 0.19 TCGA-44-6774-01 2 234200895 234200895 C T ATG16L1 Nonsense_Mutation p.R518* 0.20 TCGA-44-6774-01 2 236706518 236706518 G T AGAP1 Silent p.V263V 0.17 TCGA-44-6774-01 2 68352471 68352471 C A WDR92 3'Flank 0.13 TCGA-44-6774-01 2 74146648 74146648 C A ACTG2 Missense_Mutation p.S359R 0.23 deleterious_low_confidence(0.02) probably_damaging(0.968) TCGA-44-6774-01 2 85051250 85051250 C T TRABD2A Silent p.P338P 0.22 TCGA-44-6774-01 2 96687911 96687911 C A GPAT2 Missense_Mutation p.S795I 0.17 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-44-6774-01 3 101520396 101520396 G T NXPE3 Missense_Mutation p.K137N 0.14 deleterious(0) probably_damaging(1) TCGA-44-6774-01 3 128292497 128292497 C T C3orf27 Missense_Mutation p.V26I 0.26 benign(0.208) TCGA-44-6774-01 3 13417095 13417095 T A NUP210 Missense_Mutation p.E447V 0.19 deleterious(0) benign(0.065) TCGA-44-6774-01 3 142567310 142567310 G T PCOLCE2 Missense_Mutation p.P66H 0.24 deleterious(0) probably_damaging(0.995) TCGA-44-6774-01 3 149093324 149093324 A T TM4SF1 Missense_Mutation p.C107S 0.11 tolerated(0.39) probably_damaging(1) TCGA-44-6774-01 3 150421307 150421307 G C FAM194A Missense_Mutation p.P127A 0.09 tolerated(0.31) benign(0.002) TCGA-44-6774-01 3 151176498 151176498 C A IGSF10 5'Flank 0.19 TCGA-44-6774-01 3 151176499 151176499 C T IGSF10 5'Flank 0.19 TCGA-44-6774-01 3 16268973 16268973 G A GALNT15 Missense_Mutation p.R629H 0.12 tolerated(0.3) benign(0.004) TCGA-44-6774-01 3 170858245 170858245 C A TNIK Silent p.R425R 0.18 TCGA-44-6774-01 3 183885372 183885372 A T DVL3 Silent p.L401L 0.17 TCGA-44-6774-01 3 21606170 21606170 G T ZNF385D Missense_Mutation p.P58T 0.17 deleterious(0) benign(0.026) TCGA-44-6774-01 3 42916116 42916116 G T CYP8B1 Missense_Mutation p.P398H 0.19 deleterious(0.03) probably_damaging(0.974) TCGA-44-6774-01 3 44867888 44867888 G T KIF15 Missense_Mutation p.A908S 0.14 tolerated(0.36) probably_damaging(0.996) TCGA-44-6774-01 3 48416855 48416855 G T FBXW12 Nonsense_Mutation p.E100* 0.11 TCGA-44-6774-01 3 49694474 49694474 G A BSN Silent p.L2495L 0.20 TCGA-44-6774-01 3 53752403 53752403 G T CACNA1D Missense_Mutation p.C489F 0.07 deleterious(0.01) possibly_damaging(0.597) TCGA-44-6774-01 3 55504432 55504432 C A WNT5A Silent p.R277R 0.14 TCGA-44-6774-01 3 55504433 55504433 C A WNT5A Missense_Mutation p.R277L 0.14 tolerated(0.08) possibly_damaging(0.5) TCGA-44-6774-01 3 66550796 66550796 C A LRIG1 Silent p.P12P 0.09 TCGA-44-6774-01 3 68055839 68055839 C A FAM19A1 Missense_Mutation p.H24N 0.10 tolerated(0.49) benign(0) TCGA-44-6774-01 3 95374287 95374287 G T MTHFD2P1 RNA 0.24 TCGA-44-6774-01 4 126370833 126370833 G C FAT4 Missense_Mutation p.G2888R 0.11 probably_damaging(0.999) TCGA-44-6774-01 4 1343559 1343559 G T UVSSA Missense_Mutation p.A116S 0.17 tolerated(0.31) benign(0.102) TCGA-44-6774-01 4 138453002 138453002 C A PCDH18 Nonsense_Mutation p.E81* 0.14 TCGA-44-6774-01 4 154191528 154191528 G T TRIM2 Missense_Mutation p.Q24H 0.12 tolerated_low_confidence(0.35) benign(0.047) TCGA-44-6774-01 4 155490895 155490895 C A FGB Silent p.T396T 0.21 TCGA-44-6774-01 4 162380417 162380417 G A FSTL5 Nonsense_Mutation p.Q555* 0.15 TCGA-44-6774-01 4 175237375 175237375 A C CEP44 Silent p.T340T 0.16 TCGA-44-6774-01 4 177142368 177142368 G A ASB5 Missense_Mutation p.T203I 0.24 deleterious(0.03) benign(0.174) TCGA-44-6774-01 4 189012705 189012705 C G TRIML2 Missense_Mutation p.G329A 0.18 deleterious(0.01) probably_damaging(0.985) TCGA-44-6774-01 4 2238091 2238091 T C HAUS3 Missense_Mutation p.N481S 0.25 tolerated(0.05) benign(0.004) TCGA-44-6774-01 4 2661632 2661632 A T FAM193A Silent p.P241P 0.19 TCGA-44-6774-01 4 52860731 52860731 C A LRRC66 Silent p.P819P 0.13 TCGA-44-6774-01 4 647771 647771 C A PDE6B Missense_Mutation p.T281N 0.11 deleterious(0.03) possibly_damaging(0.794) TCGA-44-6774-01 4 69195782 69195782 C A YTHDC1 Silent p.V429V 0.16 TCGA-44-6774-01 5 114607173 114607173 C A CCDC112 Missense_Mutation p.A357S 0.14 tolerated(0.06) possibly_damaging(0.555) TCGA-44-6774-01 5 121187648 121187648 G T FTMT 5'Flank 0.15 TCGA-44-6774-01 5 127666379 127666379 C G FBN2 Missense_Mutation p.E1411Q 0.17 deleterious(0) probably_damaging(0.997) TCGA-44-6774-01 5 134190862 134190862 G T C5orf24 Missense_Mutation p.G91V 0.17 deleterious(0) probably_damaging(1) TCGA-44-6774-01 5 13864666 13864666 C A DNAH5 Missense_Mutation p.C1479F 0.31 benign(0.169) TCGA-44-6774-01 5 140553068 140553068 G T PCDHB7 Missense_Mutation p.G218C 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-6774-01 5 140744069 140744069 G T PCDHGA5 Nonsense_Mutation p.E58* 0.09 TCGA-44-6774-01 5 148753957 148753957 G T IL17B Missense_Mutation p.A173D 0.25 deleterious(0) probably_damaging(0.997) TCGA-44-6774-01 5 149676935 149676935 C A ARSI Missense_Mutation p.G518C 0.12 deleterious(0) probably_damaging(0.999) TCGA-44-6774-01 5 16672820 16672820 C A MYO10 Missense_Mutation p.D1763Y 0.24 deleterious(0) probably_damaging(0.997) TCGA-44-6774-01 5 16701144 16701144 G C MYO10 Missense_Mutation p.D1120E 0.36 tolerated_low_confidence(0.23) benign(0.301) TCGA-44-6774-01 5 19520859 19520859 T A CDH18 Silent p.T473T 0.34 TCGA-44-6774-01 5 33951520 33951520 G C SLC45A2 Intron 0.38 TCGA-44-6774-01 5 50124151 50124151 C T PARP8 Missense_Mutation p.S699L 0.08 deleterious(0.02) probably_damaging(0.938) TCGA-44-6774-01 6 10995243 10995243 G T ELOVL2 Missense_Mutation p.Q168K 0.14 deleterious(0.02) probably_damaging(0.963) TCGA-44-6774-01 6 117130516 117130516 C A GPRC6A Missense_Mutation p.M153I 0.14 tolerated(1) benign(0.002) TCGA-44-6774-01 6 135239767 135239767 T C ALDH8A1 Missense_Mutation p.Y417C 0.14 deleterious(0) probably_damaging(1) TCGA-44-6774-01 6 151673210 151673210 G C AKAP12 Silent p.V1228V 0.22 TCGA-44-6774-01 6 151687533 151687533 T C ZBTB2 Missense_Mutation p.E223G 0.16 tolerated(0.06) benign(0.091) TCGA-44-6774-01 6 20152873 20152873 A T MBOAT1 Missense_Mutation p.V76D 0.36 deleterious(0) benign(0.197) TCGA-44-6774-01 6 25773866 25773866 G C SLC17A4 Silent p.T317T 0.42 TCGA-44-6774-01 6 26393509 26393509 G T BTN2A2 3'UTR 0.45 TCGA-44-6774-01 6 27879562 27879562 C G OR2B2 Missense_Mutation p.C179S 0.17 deleterious(0) probably_damaging(0.998) TCGA-44-6774-01 6 32035686 32035686 C A TNXB Missense_Mutation p.G2099V 0.32 probably_damaging(0.999) TCGA-44-6774-01 6 33690860 33690860 A G IP6K3 Silent p.N290N 0.29 TCGA-44-6774-01 6 36196766 36196766 G T BRPF3 Nonsense_Mutation p.E1123* 0.29 TCGA-44-6774-01 6 36930861 36930861 T A PI16 Missense_Mutation p.V248D 0.13 tolerated(0.09) possibly_damaging(0.713) TCGA-44-6774-01 6 38905924 38905924 C T DNAH8 Missense_Mutation p.T3696I 0.36 benign(0.271) TCGA-44-6774-01 6 39047364 39047364 C A GLP1R Silent p.L356L 0.13 TCGA-44-6774-01 6 50696930 50696930 G C TFAP2D Missense_Mutation p.R263P 0.13 deleterious(0) probably_damaging(0.995) TCGA-44-6774-01 6 50696931 50696931 C A TFAP2D Silent p.R263R 0.14 TCGA-44-6774-01 6 55113436 55113436 G A HCRTR2 Splice_Site p.X75_splice 0.15 TCGA-44-6774-01 6 70970395 70970395 C A COL9A1 Missense_Mutation p.G472C 0.20 probably_damaging(0.999) TCGA-44-6774-01 6 90428642 90428642 A T MDN1 Nonsense_Mutation p.C2055* 0.22 TCGA-44-6774-01 7 102079390 102079390 G T ORAI2 Splice_Site 0.18 TCGA-44-6774-01 7 102517943 102517943 C A FBXL13 Missense_Mutation p.D536Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-44-6774-01 7 120782149 120782149 C A CPED1 Missense_Mutation p.P670Q 0.15 deleterious(0) probably_damaging(0.998) TCGA-44-6774-01 7 124475445 124475445 T A POT1 Nonsense_Mutation p.K465* 0.22 TCGA-44-6774-01 7 127014765 127014765 C A ZNF800 Nonsense_Mutation p.E209* 0.22 TCGA-44-6774-01 7 139416353 139416353 C A HIPK2 Missense_Mutation p.A161S 0.18 tolerated(0.66) benign(0.071) TCGA-44-6774-01 7 140453193 140453193 T C BRAF Missense_Mutation p.N581S 0.09 deleterious(0.04) benign(0.082) TCGA-44-6774-01 7 143140666 143140666 G T TAS2R60 Missense_Mutation p.A41S 0.24 tolerated(0.08) benign(0.109) TCGA-44-6774-01 7 150644045 150644045 G T KCNH2 Missense_Mutation p.P1084T 0.15 tolerated(0.13) benign(0.108) TCGA-44-6774-01 7 157959945 157959945 C A PTPRN2 Silent p.V196V 0.11 TCGA-44-6774-01 7 30793517 30793517 C A INMT Missense_Mutation p.P109T 0.22 deleterious(0) benign(0.122) TCGA-44-6774-01 7 41730102 41730102 C T INHBA Missense_Mutation p.E143K 0.24 deleterious(0) probably_damaging(0.988) TCGA-44-6774-01 7 41730103 41730103 C A INHBA Missense_Mutation p.K142N 0.21 tolerated(0.59) possibly_damaging(0.907) TCGA-44-6774-01 7 48520677 48520677 C A ABCA13 Missense_Mutation p.H4340Q 0.21 benign(0.013) TCGA-44-6774-01 7 53103500 53103500 C A POM121L12 Missense_Mutation p.P46T 0.18 deleterious(0.03) probably_damaging(0.958) TCGA-44-6774-01 7 76112318 76112318 G T DTX2 Silent p.G254G 0.10 TCGA-44-6774-01 7 95216781 95216781 T C PDK4 Silent p.T310T 0.21 TCGA-44-6774-01 7 97822738 97822738 C G LMTK2 Missense_Mutation p.F987L 0.06 tolerated(0.49) benign(0.001) TCGA-44-6774-01 8 11414294 11414294 C T BLK Silent p.Y300Y 0.18 TCGA-44-6774-01 8 114186001 114186001 G T CSMD3 Missense_Mutation p.A220D 0.17 tolerated(0.43) benign(0.41) TCGA-44-6774-01 8 121381596 121381596 G T COL14A1 Missense_Mutation p.S1728I 0.14 deleterious(0.04) possibly_damaging(0.877) TCGA-44-6774-01 8 24811218 24811218 G A CTD-2168K21.2 5'Flank 0.15 TCGA-44-6774-01 8 38948862 38948862 A G ADAM9 Silent p.E765E 0.11 TCGA-44-6774-01 8 42823213 42823213 G T HOOK3 Missense_Mutation p.K326N 0.33 deleterious(0) probably_damaging(0.998) TCGA-44-6774-01 8 54142028 54142028 G T OPRK1 Missense_Mutation p.S324R 0.11 deleterious(0.04) probably_damaging(0.999) TCGA-44-6774-01 8 72246386 72246386 T A EYA1 Missense_Mutation p.S50C 0.35 deleterious(0) possibly_damaging(0.58) TCGA-44-6774-01 9 118997534 118997534 G T PAPPA Nonsense_Mutation p.E784* 0.18 TCGA-44-6774-01 9 20946798 20946798 G T FOCAD Silent p.L1218L 0.17 TCGA-44-6774-01 9 4625390 4625390 C A SPATA6L Missense_Mutation p.Q144H 0.22 tolerated(0.33) probably_damaging(0.977) TCGA-44-6774-01 9 4625413 4625413 A C SPATA6L Missense_Mutation p.F137V 0.19 tolerated(0.2) possibly_damaging(0.556) TCGA-44-6774-01 9 5920027 5920027 G C KIAA2026 Missense_Mutation p.A1990G 0.15 tolerated(0.05) benign(0.263) TCGA-44-6774-01 9 5920648 5920648 C A KIAA2026 Missense_Mutation p.R1783L 0.19 tolerated(0.2) benign(0.072) TCGA-44-6774-01 9 84531794 84531794 T A SPATA31D5P RNA 0.34 TCGA-44-6774-01 X 100178004 100178004 C A XKRX Nonsense_Mutation p.E128* 0.18 TCGA-44-6774-01 X 107977841 107977841 A T IRS4 Missense_Mutation p.D578E 0.18 deleterious_low_confidence(0) unknown(0) TCGA-44-6774-01 X 108708604 108708604 G C GUCY2F Missense_Mutation p.H267D 0.15 tolerated(0.24) benign(0.433) TCGA-44-6774-01 X 111195529 111195529 C A TRPC5 Silent p.V40V 0.20 TCGA-44-6774-01 X 118108865 118108865 T C LONRF3 Missense_Mutation p.V41A 0.21 tolerated_low_confidence(1) benign(0) TCGA-44-6774-01 X 118675326 118675326 G C CXorf56 Missense_Mutation p.R191G 0.20 deleterious(0.01) benign(0.011) TCGA-44-6774-01 X 119387450 119387450 C A ZBTB33 Silent p.L60L 0.15 TCGA-44-6774-01 X 123839006 123839006 G A TENM1 Missense_Mutation p.P291L 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-6774-01 X 128657272 128657272 C A SMARCA1 Missense_Mutation p.D26Y 0.18 deleterious_low_confidence(0) benign(0.144) TCGA-44-6774-01 X 129271088 129271088 T A AIFM1 Missense_Mutation p.Y347F 0.18 deleterious(0) possibly_damaging(0.869) TCGA-44-6774-01 X 131212510 131212510 C A FRMD7 Missense_Mutation p.R512I 0.19 tolerated(0.2) benign(0) TCGA-44-6774-01 X 132160953 132160953 G T USP26 Nonsense_Mutation p.C432* 0.17 TCGA-44-6774-01 X 13337046 13337046 G T ATXN3L Silent p.A336A 0.23 TCGA-44-6774-01 X 134983834 134983834 G A SAGE1 Nonsense_Mutation p.W68* 0.17 TCGA-44-6774-01 X 13624574 13624574 C A EGFL6 Nonsense_Mutation p.Y199* 0.22 TCGA-44-6774-01 X 14548166 14548166 A G GLRA2 5'UTR 0.13 TCGA-44-6774-01 X 14882911 14882911 T A FANCB Missense_Mutation p.H241L 0.17 tolerated(0.08) benign(0.048) TCGA-44-6774-01 X 149013289 149013289 C G MAGEA8 Missense_Mutation p.S81R 0.17 tolerated(0.19) benign(0.06) TCGA-44-6774-01 X 14915215 14915215 G T MOSPD2 Missense_Mutation p.R111M 0.13 deleterious(0.03) possibly_damaging(0.734) TCGA-44-6774-01 X 151092221 151092221 C A MAGEA4 Missense_Mutation p.Q29K 0.21 deleterious(0.03) benign(0.431) TCGA-44-6774-01 X 152720441 152720441 G T HAUS7 Intron 0.17 TCGA-44-6774-01 X 15306059 15306059 G T ASB11 Missense_Mutation p.A264E 0.21 deleterious(0) probably_damaging(0.91) TCGA-44-6774-01 X 153197425 153197425 C A NAA10 Intron 0.22 TCGA-44-6774-01 X 153219071 153219071 C A HCFC1 Missense_Mutation p.G1495V 0.16 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-44-6774-01 X 153694526 153694526 C A PLXNA3 Silent p.P904P 0.15 TCGA-44-6774-01 X 153880408 153880408 G A CTAG2 3'UTR 0.15 TCGA-44-6774-01 X 19027777 19027777 A T GPR64 Silent p.T463T 0.13 TCGA-44-6774-01 X 26157298 26157298 G T MAGEB18 Nonsense_Mutation p.G66* 0.20 TCGA-44-6774-01 X 29938182 29938182 G T IL1RAPL1 Missense_Mutation p.R343L 0.25 tolerated(0.07) benign(0.355) TCGA-44-6774-01 X 3002590 3002590 C A ARSF Missense_Mutation p.T238K 0.10 tolerated(0.32) benign(0.023) TCGA-44-6774-01 X 30237292 30237292 C A MAGEB2 Missense_Mutation p.P199T 0.23 deleterious(0) possibly_damaging(0.897) TCGA-44-6774-01 X 34148514 34148514 G A FAM47A Silent p.L628L 0.19 TCGA-44-6774-01 X 37655268 37655268 C A CYBB Missense_Mutation p.T183K 0.15 deleterious(0) probably_damaging(0.989) TCGA-44-6774-01 X 39933626 39933626 G T BCOR Missense_Mutation p.L325M 0.11 tolerated(0.29) probably_damaging(0.998) TCGA-44-6774-01 X 48762073 48762073 C A SLC35A2 Silent p.P371P 0.22 TCGA-44-6774-01 X 54466893 54466893 G T TSR2 Silent p.R13R 0.19 TCGA-44-6774-01 X 54497808 54497808 C A FGD1 Silent p.P140P 0.27 TCGA-44-6774-01 X 55513306 55513306 G A USP51 Silent p.T689T 0.16 TCGA-44-6774-01 X 56591074 56591074 C G UBQLN2 Missense_Mutation p.S256R 0.15 deleterious(0.01) probably_damaging(0.979) TCGA-44-6774-01 X 5821398 5821398 C A NLGN4X Missense_Mutation p.V441L 0.22 tolerated(0.43) probably_damaging(0.957) TCGA-44-6774-01 X 591557 591557 G T SHOX 5'UTR 0.25 TCGA-44-6774-01 X 591669 591669 G T SHOX Missense_Mutation p.D13Y 0.10 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-44-6774-01 X 63410828 63410828 C A AMER1 Missense_Mutation p.G780V 0.23 deleterious(0.02) benign(0.055) TCGA-44-6774-01 X 69902602 69902602 G T TEX11 Missense_Mutation p.L375M 0.22 deleterious(0.02) possibly_damaging(0.882) TCGA-44-6774-01 X 70824043 70824043 G T ACRC Missense_Mutation p.D306Y 0.14 unknown(0) TCGA-44-6774-01 X 73064562 73064562 T C XIST RNA 0.16 TCGA-44-6774-01 X 79699123 79699123 C A FAM46D Missense_Mutation p.P362H 0.13 tolerated(0.56) benign(0.004) TCGA-44-6774-01 X 90690795 90690795 G C PABPC5 Missense_Mutation p.E73D 0.16 deleterious(0.02) benign(0.176) TCGA-44-6775-01 10 24889824 24889824 C A ARHGAP21 Missense_Mutation p.M961I 0.06 tolerated(0.09) benign(0.289) TCGA-44-6775-01 10 26851273 26851273 C T APBB1IP Missense_Mutation p.T463I 0.04 tolerated(0.2) benign(0.002) TCGA-44-6775-01 11 108380300 108380300 G C EXPH5 Nonsense_Mutation p.Y1978* 0.10 TCGA-44-6775-01 11 118770846 118770847 - C BCL9L Frame_Shift_Ins p.S1062Rfs*108 0.12 TCGA-44-6775-01 11 30032876 30032876 T C KCNA4 Silent p.R450R 0.12 TCGA-44-6775-01 11 58378451 58378451 G A ZFP91 Missense_Mutation p.E216K 0.06 deleterious_low_confidence(0.05) probably_damaging(0.98) TCGA-44-6775-01 11 58723154 58723154 G A GLYATL1 Missense_Mutation p.R219Q 0.11 deleterious(0.01) benign(0.012) TCGA-44-6775-01 11 62549737 62549737 C A TAF6L Silent p.S253S 0.09 TCGA-44-6775-01 11 65268722 65268723 AT - MALAT1 RNA 0.18 TCGA-44-6775-01 11 9834135 9834135 T C SBF2 Missense_Mutation p.T1367A 0.13 tolerated(0.21) benign(0.006) TCGA-44-6775-01 12 55688501 55688501 A C OR6C6 Missense_Mutation p.I172M 0.11 deleterious_low_confidence(0.01) benign(0.417) TCGA-44-6775-01 12 62104092 62104092 T C FAM19A2 3'UTR 0.16 TCGA-44-6775-01 12 6939686 6939686 C T LEPREL2 Missense_Mutation p.A273V 0.31 tolerated(0.13) benign(0.007) TCGA-44-6775-01 13 20411811 20411811 A G ZMYM5 Silent p.C341C 0.15 TCGA-44-6775-01 13 30829613 30829613 C A KATNAL1 Missense_Mutation p.D155Y 0.26 deleterious(0.02) benign(0.1) TCGA-44-6775-01 13 49030371 49030372 - T RB1 Frame_Shift_Ins p.K616Ifs*37 0.15 TCGA-44-6775-01 13 96579553 96579553 A G UGGT2 Missense_Mutation p.L672P 0.31 deleterious(0) probably_damaging(0.914) TCGA-44-6775-01 15 62333557 62333557 C G VPS13C Missense_Mutation p.L51F 0.15 tolerated(0.11) benign(0.439) TCGA-44-6775-01 15 91341436 91341436 A G BLM Missense_Mutation p.D1076G 0.24 deleterious(0.02) probably_damaging(0.963) TCGA-44-6775-01 17 29490291 29490291 G T NF1 Nonsense_Mutation p.E126* 0.26 TCGA-44-6775-01 17 39155965 39155965 G A KRTAP3-2 Silent p.C47C 0.15 TCGA-44-6775-01 17 72848226 72848226 T A GRIN2C Silent p.G308G 0.16 TCGA-44-6775-01 17 7578427 7578427 T A TP53 Missense_Mutation p.H168L 0.08 deleterious(0) benign(0.266) TCGA-44-6775-01 17 8138437 8138437 C A CTC1 Missense_Mutation p.W458L 0.16 tolerated(0.19) benign(0.2) TCGA-44-6775-01 18 33775220 33775220 G A MOCOS Missense_Mutation p.G48E 0.05 tolerated(0.09) benign(0.157) TCGA-44-6775-01 19 10395637 10395637 C G ICAM1 Silent p.G453G 0.12 TCGA-44-6775-01 19 12807331 12807331 G A FBXW9 Missense_Mutation p.S22L 0.22 tolerated_low_confidence(0.26) benign(0.003) TCGA-44-6775-01 19 17213241 17213241 G A MYO9B Silent p.S238S 0.09 TCGA-44-6775-01 1 110882747 110882747 C T RBM15 Silent p.L240L 0.15 TCGA-44-6775-01 1 145368660 145368660 G T NBPF10 Missense_Mutation p.Q3546H 0.12 benign(0.302) TCGA-44-6775-01 1 154987882 154987882 G A ZBTB7B Missense_Mutation p.G283E 0.49 tolerated(0.56) benign(0.155) TCGA-44-6775-01 1 155290372 155290372 C T FDPS Missense_Mutation p.A411V 0.15 tolerated(0.35) benign(0.122) TCGA-44-6775-01 1 17966799 17966799 T G ARHGEF10L Splice_Site p.X758_splice 0.19 TCGA-44-6775-01 1 23885965 23885965 G T ID3 5'UTR 0.23 TCGA-44-6775-01 1 43806055 43806055 T C MPL Intron 0.11 TCGA-44-6775-01 1 44595592 44595592 G A KLF17 Missense_Mutation p.A217T 0.25 tolerated(0.15) benign(0.001) TCGA-44-6775-01 20 62854714 62854714 T C MYT1 Splice_Site p.X843_splice 0.38 TCGA-44-6775-01 21 46021597 46021597 G T KRTAP10-7 Missense_Mutation p.C359F 0.14 deleterious(0) unknown(0) TCGA-44-6775-01 2 179596231 179596231 C G TTN Missense_Mutation p.K5754N 0.13 TCGA-44-6775-01 2 187529903 187529903 G T ITGAV Missense_Mutation p.Q708H 0.14 tolerated(0.15) possibly_damaging(0.796) TCGA-44-6775-01 2 197946440 197946440 G C ANKRD44 Missense_Mutation p.I464M 0.04 tolerated(0.25) benign(0.009) TCGA-44-6775-01 2 218999975 218999975 G A CXCR2 Missense_Mutation p.A151T 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-44-6775-01 2 220167372 220167372 G T PTPRN Missense_Mutation p.L189M 0.14 deleterious(0.02) benign(0.209) TCGA-44-6775-01 2 74755112 74755112 G A AUP1 Silent p.R231R 0.19 TCGA-44-6775-01 2 79384709 79384709 G A REG3A Missense_Mutation p.S150L 0.17 tolerated(0.06) probably_damaging(0.956) TCGA-44-6775-01 2 95774073 95774073 T G MRPS5 Missense_Mutation p.K162Q 0.17 tolerated(0.38) benign(0.04) TCGA-44-6775-01 2 98916570 98916570 T C VWA3B Missense_Mutation p.V1104A 0.14 tolerated(0.83) benign(0.066) TCGA-44-6775-01 2 99438351 99438351 C T KIAA1211L Silent p.T795T 0.08 TCGA-44-6775-01 3 20082268 20082268 G A KAT2B Missense_Mutation p.C100Y 0.11 deleterious(0) probably_damaging(0.988) TCGA-44-6775-01 3 51967786 51967786 G C RRP9 Missense_Mutation p.I424M 0.04 deleterious(0) possibly_damaging(0.602) TCGA-44-6775-01 3 9867508 9867508 C A TTLL3 Silent p.L393L 0.14 TCGA-44-6775-01 4 186318034 186318034 T C ANKRD37 5'UTR 0.20 TCGA-44-6775-01 4 39291651 39291651 T C RFC1 Silent p.A1060A 0.18 TCGA-44-6775-01 4 46252531 46252531 G T GABRA2 Missense_Mutation p.L384I 0.17 tolerated(0.21) benign(0.119) TCGA-44-6775-01 4 46930366 46930366 C T GABRA4 Missense_Mutation p.G514D 0.16 deleterious(0.01) probably_damaging(1) TCGA-44-6775-01 4 48151596 48151596 T A TEC Missense_Mutation p.E328D 0.14 tolerated(0.33) benign(0.015) TCGA-44-6775-01 4 69182124 69182124 A T YTHDC1 Missense_Mutation p.Y623N 0.13 deleterious(0.01) benign(0.43) TCGA-44-6775-01 4 88732809 88732809 G T IBSP Missense_Mutation p.G234V 0.18 tolerated(0.13) benign(0.076) TCGA-44-6775-01 5 140782870 140782870 C T PCDHGA9 Silent p.Y117Y 0.04 TCGA-44-6775-01 5 174870117 174870117 G A DRD1 5'UTR 0.04 TCGA-44-6775-01 5 178415969 178415969 G A GRM6 Missense_Mutation p.L441F 0.10 tolerated(0.14) probably_damaging(0.942) TCGA-44-6775-01 5 19612631 19612631 C A CDH18 Missense_Mutation p.M241I 0.14 deleterious(0) probably_damaging(0.968) TCGA-44-6775-01 5 33546240 33546240 C T ADAMTS12 Nonsense_Mutation p.W1457* 0.24 TCGA-44-6775-01 5 41934094 41934094 C T FBXO4 Silent p.F231F 0.15 TCGA-44-6775-01 5 64070566 64070566 A G CWC27 Missense_Mutation p.K31E 0.17 deleterious(0) probably_damaging(0.999) TCGA-44-6775-01 5 82815664 82815664 C G VCAN Missense_Mutation p.F513L 0.05 tolerated(1) benign(0.003) TCGA-44-6775-01 6 26124699 26124699 T C HIST1H2AC Missense_Mutation p.I80T 0.06 tolerated_low_confidence(0.08) possibly_damaging(0.499) TCGA-44-6775-01 7 44149709 44149709 C T AEBP1 Missense_Mutation p.R416W 0.17 deleterious(0) probably_damaging(0.999) TCGA-44-6775-01 7 6026790 6026790 G A PMS2 Nonsense_Mutation p.Q536* 0.03 TCGA-44-6775-01 7 66764315 66764315 C T Y_RNA 5'Flank 0.05 TCGA-44-6775-01 7 72985560 72985560 G T TBL2 Silent p.S279S 0.08 TCGA-44-6775-01 8 113323388 113323388 G T CSMD3 Nonsense_Mutation p.Y2568* 0.17 TCGA-44-6775-01 8 120816177 120816177 C T TAF2 Silent p.E167E 0.09 TCGA-44-6775-01 8 145699820 145699820 C G FOXH1 Missense_Mutation p.C300S 0.06 tolerated(0.11) probably_damaging(0.99) TCGA-44-6775-01 8 99440602 99440604 AGG - KCNS2 In_Frame_Del p.E133del 0.09 TCGA-44-6775-01 9 117791710 117791710 C A TNC Missense_Mutation p.R2033L 0.14 deleterious(0.04) benign(0.015) TCGA-44-6775-01 9 13162689 13162689 C A MPDZ Splice_Site p.X1120_splice 0.15 TCGA-44-6775-01 9 133987029 133987029 G A AIF1L Missense_Mutation p.E73K 0.03 tolerated(0.07) benign(0.347) TCGA-44-6775-01 9 136234232 136234232 G T SURF4 Missense_Mutation p.F46L 0.05 tolerated(0.2) benign(0.02) TCGA-44-6775-01 9 138710316 138710316 C A CAMSAP1 Missense_Mutation p.R1369L 0.12 deleterious(0) probably_damaging(0.995) TCGA-44-6775-01 9 32550861 32550861 G A TOPORS Missense_Mutation p.R37C 0.05 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-44-6775-01 9 77502858 77502858 G T TRPM6 5'UTR 0.16 TCGA-44-6775-01 X 106310709 106310709 G A RBM41 3'UTR 0.04 TCGA-44-6775-01 X 118223537 118223537 G C KIAA1210 Missense_Mutation p.F552L 0.03 tolerated(0.54) benign(0.008) TCGA-44-6775-01 X 13338054 13338054 G C ATXN3L 5'UTR 0.27 TCGA-44-6775-01 X 134993792 134993792 C T SAGE1 Missense_Mutation p.P734L 0.23 deleterious(0.05) probably_damaging(0.999) TCGA-44-6775-01 X 152226180 152226180 C T PNMA3 Silent p.A256A 0.08 TCGA-44-6775-01 X 154456755 154456755 G A VBP1 Silent p.L125L 0.25 TCGA-44-6775-01 X 62875535 62875535 C T ARHGEF9 Missense_Mutation p.R380K 0.04 tolerated(1) benign(0.006) TCGA-44-6775-01 X 86890732 86890732 C T KLHL4 Missense_Mutation p.P628S 0.08 deleterious(0.01) possibly_damaging(0.831) TCGA-44-6776-01 10 103542607 103542607 C A NPM3 Missense_Mutation p.A65S 0.31 tolerated(0.97) possibly_damaging(0.474) TCGA-44-6776-01 10 104244124 104244124 T A ACTR1A Silent p.T150T 0.31 TCGA-44-6776-01 10 115356917 115356917 A G NRAP Silent p.S1453S 0.25 TCGA-44-6776-01 10 118029077 118029077 G T GFRA1 Missense_Mutation p.S119Y 0.22 deleterious(0) possibly_damaging(0.742) TCGA-44-6776-01 10 125426536 125426536 C A GPR26 Missense_Mutation p.R205S 0.31 deleterious(0.02) probably_damaging(0.988) TCGA-44-6776-01 10 134628239 134628239 G T TTC40 Silent p.P2400P 0.30 TCGA-44-6776-01 10 14996080 14996080 C A DCLRE1C 5'Flank 0.57 TCGA-44-6776-01 10 5782228 5782228 C T FAM208B Missense_Mutation p.R699W 0.08 deleterious(0) probably_damaging(0.999) TCGA-44-6776-01 10 93939 93939 C G TUBB8 Missense_Mutation p.Q131H 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-6776-01 10 96740969 96740969 A T CYP2C9 Missense_Mutation p.I331F 0.36 deleterious(0) possibly_damaging(0.823) TCGA-44-6776-01 11 113661726 113661726 G T ATF4P4 RNA 0.22 TCGA-44-6776-01 11 114569375 114569375 C A NXPE2 Missense_Mutation p.D247E 0.26 tolerated(0.98) benign(0.006) TCGA-44-6776-01 11 118772195 118772195 T A BCL9L Missense_Mutation p.M753L 0.32 benign(0.002) TCGA-44-6776-01 11 122666894 122666894 C A UBASH3B Missense_Mutation p.Q382K 0.24 tolerated(0.93) benign(0.001) TCGA-44-6776-01 11 123810710 123810710 C A OR4D5 Silent p.P129P 0.25 TCGA-44-6776-01 11 125499295 125499295 C T CHEK1 Missense_Mutation p.H122Y 0.27 deleterious(0) probably_damaging(1) TCGA-44-6776-01 11 17757877 17757877 C A KCNC1 Missense_Mutation p.R110S 0.30 tolerated(0.16) probably_damaging(0.976) TCGA-44-6776-01 11 36103274 36103274 T A LDLRAD3 Missense_Mutation p.F89I 0.32 deleterious(0) probably_damaging(0.939) TCGA-44-6776-01 11 4566472 4566472 G T OR52M1 Missense_Mutation p.G18C 0.27 deleterious(0) probably_damaging(1) TCGA-44-6776-01 11 48347481 48347481 A T OR4C3 Nonstop_Mutation p.*330Lext*7 0.12 TCGA-44-6776-01 11 55861219 55861219 G T OR8I2 Missense_Mutation p.V146L 0.22 tolerated(0.13) benign(0.004) TCGA-44-6776-01 11 56057871 56057871 G T OR8H1 Missense_Mutation p.T223N 0.38 deleterious(0.05) benign(0.12) TCGA-44-6776-01 11 6292734 6292734 G C CCKBR Missense_Mutation p.R435S 0.27 deleterious(0) possibly_damaging(0.858) TCGA-44-6776-01 11 66099844 66099844 G A RIN1 Missense_Mutation p.S752F 0.36 tolerated_low_confidence(0.05) benign(0.365) TCGA-44-6776-01 11 66807645 66807645 C T SYT12 Missense_Mutation p.P198S 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-44-6776-01 11 6891249 6891249 G A OR10A2 Missense_Mutation p.M88I 0.26 deleterious(0.01) benign(0.094) TCGA-44-6776-01 12 113600946 113600946 C T DDX54 Missense_Mutation p.S691N 0.17 deleterious(0.01) probably_damaging(0.962) TCGA-44-6776-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.43 deleterious(0) benign(0.361) TCGA-44-6776-01 12 2613703 2613703 C T CACNA1C Intron 0.37 TCGA-44-6776-01 12 2797830 2797830 G A CACNA1C Missense_Mutation p.G2049D 0.30 tolerated_low_confidence(0.59) benign(0.038) TCGA-44-6776-01 12 4657319 4657319 T G RAD51AP1 Missense_Mutation p.N144K 0.06 deleterious(0) probably_damaging(0.967) TCGA-44-6776-01 12 48119241 48119241 A T ENDOU 5'UTR 0.27 TCGA-44-6776-01 12 48921695 48921695 G A OR8S1 Missense_Mutation p.G297R 0.31 deleterious(0) benign(0.065) TCGA-44-6776-01 12 49954103 49954103 C G MCRS1 Missense_Mutation p.D299H 0.27 deleterious(0) possibly_damaging(0.689) TCGA-44-6776-01 12 52845639 52845639 C - KRT6B Frame_Shift_Del p.G75Afs*71 0.27 TCGA-44-6776-01 12 5603347 5603347 G C NTF3 Intron 0.39 TCGA-44-6776-01 12 58007844 58007844 C T ARHGEF25 Nonsense_Mutation p.R239* 0.09 TCGA-44-6776-01 12 72335413 72335413 G A TPH2 Missense_Mutation p.S52N 0.23 tolerated(0.61) benign(0) TCGA-44-6776-01 12 79679569 79679569 C A SYT1 Missense_Mutation p.P57T 0.23 deleterious(0) probably_damaging(0.926) TCGA-44-6776-01 12 80623041 80623041 A G OTOGL Missense_Mutation p.H156R 0.32 deleterious(0) possibly_damaging(0.886) TCGA-44-6776-01 12 81239642 81239642 C A LIN7A Missense_Mutation p.G117V 0.20 deleterious(0) probably_damaging(0.993) TCGA-44-6776-01 12 86373314 86373314 C - MGAT4C Frame_Shift_Del p.G397Efs*15 0.17 TCGA-44-6776-01 13 101308647 101308647 C A TMTC4 Missense_Mutation p.A210S 0.38 tolerated(0.3) benign(0.012) TCGA-44-6776-01 13 110817329 110817329 C A COL4A1 Missense_Mutation p.G1344C 0.19 probably_damaging(1) TCGA-44-6776-01 13 114294584 114294584 G A TFDP1 3'UTR 0.46 TCGA-44-6776-01 13 25671157 25671157 C A PABPC3 Missense_Mutation p.T274K 0.29 tolerated(0.4) benign(0.041) TCGA-44-6776-01 13 43930271 43930271 C A ENOX1 Missense_Mutation p.G203W 0.22 deleterious(0) probably_damaging(1) TCGA-44-6776-01 13 46543921 46543922 - T ZC3H13 Frame_Shift_Ins p.Q920Tfs*25 0.27 TCGA-44-6776-01 13 84454347 84454347 G T SLITRK1 Missense_Mutation p.S432R 0.25 deleterious(0) benign(0.01) TCGA-44-6776-01 14 101449283 101449283 G T SNORD114-22 RNA 0.32 TCGA-44-6776-01 14 106110084 106110084 C A IGHG2 Silent p.T178T 0.29 TCGA-44-6776-01 14 107169981 107169981 C A IGHV1-69 Nonsense_Mutation p.E101* 0.18 TCGA-44-6776-01 14 107282967 107282967 G T IGHV7-81 Missense_Mutation p.A59D 0.24 deleterious(0.02) benign(0.027) TCGA-44-6776-01 14 24800251 24800251 G C ADCY4 Silent p.L301L 0.36 TCGA-44-6776-01 14 24885566 24885566 G A NYNRIN Silent p.P1537P 0.31 TCGA-44-6776-01 14 74825221 74825221 G T VRTN Nonsense_Mutation p.E579* 0.28 TCGA-44-6776-01 14 80677806 80677806 G T DIO2 Missense_Mutation p.L4I 0.30 tolerated_low_confidence(0.13) probably_damaging(0.919) TCGA-44-6776-01 14 80677807 80677807 G T DIO2 Silent p.I3I 0.32 TCGA-44-6776-01 15 100514514 100514514 C A ADAMTS17 3'UTR 0.33 TCGA-44-6776-01 15 22332646 22332646 C A RP11-69H14.6 RNA 0.11 TCGA-44-6776-01 15 22369024 22369024 G T OR4M2 Missense_Mutation p.R150M 0.10 tolerated(0.18) benign(0) TCGA-44-6776-01 15 22369051 22369051 A G OR4M2 Missense_Mutation p.Q159R 0.12 deleterious(0) benign(0.014) TCGA-44-6776-01 15 40751953 40751953 C A BAHD1 Missense_Mutation p.H430Q 0.05 tolerated(0.07) benign(0.003) TCGA-44-6776-01 15 50546389 50546389 G T HDC Silent p.R220R 0.30 TCGA-44-6776-01 15 65989642 65989642 T C DENND4A Silent p.Q970Q 0.34 TCGA-44-6776-01 15 74654301 74654301 T C CYP11A1 Intron 0.33 TCGA-44-6776-01 15 81201518 81201518 G A KIAA1199 Silent p.P556P 0.17 TCGA-44-6776-01 15 85438235 85438235 C A SLC28A1 Silent p.V114V 0.20 TCGA-44-6776-01 16 19236108 19236108 C G SYT17 Missense_Mutation p.F392L 0.31 tolerated(0.07) benign(0.047) TCGA-44-6776-01 16 20435240 20435240 G T ACSM5 Missense_Mutation p.R257L 0.21 tolerated(0.26) benign(0.006) TCGA-44-6776-01 16 49672667 49672667 C A ZNF423 Silent p.G132G 0.24 TCGA-44-6776-01 16 52502441 52502441 C A TOX3 Missense_Mutation p.A45S 0.30 tolerated(0.33) probably_damaging(0.935) TCGA-44-6776-01 16 68109324 68109324 G T DUS2 Missense_Mutation p.R333S 0.26 tolerated(0.63) benign(0.002) TCGA-44-6776-01 16 73126801 73126801 C A HCCAT5 RNA 0.41 TCGA-44-6776-01 16 90161652 90161652 C T TUBB8P7 RNA 0.19 TCGA-44-6776-01 17 1003898 1003898 G C ABR Missense_Mutation p.N108K 0.09 tolerated(0.16) probably_damaging(0.999) TCGA-44-6776-01 17 13399671 13399671 G T HS3ST3A1 Missense_Mutation p.A355E 0.22 tolerated(0.1) benign(0.181) TCGA-44-6776-01 17 46606822 46606822 C G HOXB1 3'UTR 0.21 TCGA-44-6776-01 17 64876776 64876776 T G CACNG5 Missense_Mutation p.I129R 0.31 tolerated(0.38) probably_damaging(0.945) TCGA-44-6776-01 17 74473847 74473847 G A RHBDF2 Silent p.A260A 0.31 TCGA-44-6776-01 17 76495072 76495072 G A DNAH17-AS1 5'UTR 0.12 TCGA-44-6776-01 17 8794155 8794155 C - PIK3R5 Frame_Shift_Del p.G186Dfs*85 0.20 TCGA-44-6776-01 17 9804303 9804303 C A RCVRN Intron 0.35 TCGA-44-6776-01 18 14542880 14542880 G T POTEC Missense_Mutation p.S89Y 0.16 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-44-6776-01 18 14784490 14784490 C G ANKRD30B Missense_Mutation p.P543R 0.24 deleterious(0.02) probably_damaging(0.944) TCGA-44-6776-01 18 28986162 28986162 T A DSG4 Missense_Mutation p.C587S 0.27 deleterious(0) probably_damaging(0.999) TCGA-44-6776-01 18 32400802 32400802 C A DTNA Missense_Mutation p.S308R 0.31 tolerated(0.98) benign(0.034) TCGA-44-6776-01 18 47566513 47566513 C A MYO5B Missense_Mutation p.G104C 0.37 deleterious(0) probably_damaging(1) TCGA-44-6776-01 18 56963966 56963966 G T CPLX4 Silent p.I149I 0.23 TCGA-44-6776-01 18 61310721 61310721 G T SERPINB4 Missense_Mutation p.P31T 0.27 deleterious(0) probably_damaging(0.995) TCGA-44-6776-01 19 10610246 10610246 A G KEAP1 Missense_Mutation p.V155A 0.62 deleterious(0) probably_damaging(0.969) TCGA-44-6776-01 19 1220640 1220640 C T STK11 Nonsense_Mutation p.Q220* 0.54 TCGA-44-6776-01 19 19215725 19215725 C T SLC25A42 Missense_Mutation p.S64F 0.50 deleterious(0) probably_damaging(0.992) TCGA-44-6776-01 19 36034719 36034719 C A GAPDHS Missense_Mutation p.T349N 0.51 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-6776-01 19 36387872 36387872 G A NFKBID Missense_Mutation p.A32V 0.21 tolerated(0.21) benign(0.025) TCGA-44-6776-01 19 40433188 40433188 C T FCGBP Missense_Mutation p.V361M 0.16 possibly_damaging(0.804) TCGA-44-6776-01 19 41263354 41263354 G T SNRPA Missense_Mutation p.S64I 0.49 deleterious(0) probably_damaging(0.996) TCGA-44-6776-01 19 44251904 44251904 G A SMG9 Missense_Mutation p.P124L 0.60 tolerated(0.28) benign(0.016) TCGA-44-6776-01 19 51021872 51021872 G C LRRC4B Missense_Mutation p.I366M 0.17 deleterious(0) probably_damaging(0.935) TCGA-44-6776-01 19 51630545 51630545 C A SIGLEC9 Missense_Mutation p.S336Y 0.31 deleterious(0.04) benign(0.122) TCGA-44-6776-01 19 55086241 55086241 G A LILRA2 Silent p.V132V 0.21 TCGA-44-6776-01 19 56423822 56423822 C A NLRP13 Missense_Mutation p.S454I 0.25 deleterious(0) possibly_damaging(0.694) TCGA-44-6776-01 19 9091467 9091467 G T MUC16 Missense_Mutation p.N116K 0.57 unknown(0) TCGA-44-6776-01 1 103364517 103364517 G A COL11A1 Nonsense_Mutation p.Q1374* 0.16 TCGA-44-6776-01 1 1139804 1139804 C T TNFRSF18 Missense_Mutation p.E125K 0.21 deleterious_low_confidence(0.03) benign(0.254) TCGA-44-6776-01 1 150337348 150337348 A G RPRD2 Missense_Mutation p.K53R 0.19 tolerated_low_confidence(0.09) benign(0.005) TCGA-44-6776-01 1 152188100 152188100 C G HRNR Missense_Mutation p.G2002A 0.05 unknown(0) TCGA-44-6776-01 1 153430323 153430323 G A S100A7 Nonsense_Mutation p.Q89* 0.10 TCGA-44-6776-01 1 156703953 156703953 G T RRNAD1 Silent p.L263L 0.29 TCGA-44-6776-01 1 158736422 158736422 G T OR6N1 Missense_Mutation p.F17L 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-44-6776-01 1 158813853 158813853 G T MNDA Missense_Mutation p.D171Y 0.18 deleterious(0.02) possibly_damaging(0.556) TCGA-44-6776-01 1 176863861 176863861 G A ASTN1 Missense_Mutation p.A926V 0.24 tolerated(1) benign(0.187) TCGA-44-6776-01 1 1919959 1919959 C - C1orf222 Frame_Shift_Del p.K88Rfs*2 0.17 TCGA-44-6776-01 1 212976082 212976082 G A TATDN3 Missense_Mutation p.D100N 0.06 tolerated(0.06) benign(0.011) TCGA-44-6776-01 1 216348557 216348557 C A USH2A Intron 0.11 TCGA-44-6776-01 1 220232077 220232077 C T BPNT1 3'UTR 0.12 TCGA-44-6776-01 1 227843491 227843491 G T ZNF678 Nonsense_Mutation p.E514* 0.17 TCGA-44-6776-01 1 23111087 23111087 C A EPHB2 Missense_Mutation p.T110N 0.35 deleterious(0) probably_damaging(1) TCGA-44-6776-01 1 236734657 236734657 T C HEATR1 Missense_Mutation p.I1314M 0.28 tolerated(0.47) benign(0.08) TCGA-44-6776-01 1 242162358 242162358 C G MAP1LC3C 5'UTR 0.24 TCGA-44-6776-01 1 247695027 247695027 G T OR2C3 Missense_Mutation p.P263T 0.19 deleterious(0) probably_damaging(0.999) TCGA-44-6776-01 1 247695038 247695038 A T OR2C3 Missense_Mutation p.M259K 0.21 deleterious(0) benign(0.272) TCGA-44-6776-01 1 248458564 248458564 C G OR2T12 Missense_Mutation p.G106A 0.10 tolerated(0.54) benign(0.012) TCGA-44-6776-01 1 57411544 57411544 C A C8B Missense_Mutation p.G352V 0.35 deleterious(0) probably_damaging(1) TCGA-44-6776-01 1 67795397 67795397 C T IL12RB2 Silent p.S264S 0.27 TCGA-44-6776-01 1 75097536 75097536 A C C1orf173 Missense_Mutation p.I227S 0.37 deleterious(0) probably_damaging(0.996) TCGA-44-6776-01 1 89270578 89270578 A G PKN2 Missense_Mutation p.Q492R 0.25 deleterious(0) probably_damaging(1) TCGA-44-6776-01 20 40050551 40050551 C A CHD6 Missense_Mutation p.W1575L 0.20 deleterious(0) possibly_damaging(0.868) TCGA-44-6776-01 20 44505453 44505453 G A ZSWIM3 Missense_Mutation p.E86K 0.15 deleterious(0) benign(0.444) TCGA-44-6776-01 20 61597059 61597059 T - SLC17A9 Frame_Shift_Del p.L348Pfs*42 0.22 TCGA-44-6776-01 20 9546928 9546928 C A PAK7 Missense_Mutation p.G365V 0.24 deleterious(0.02) benign(0.074) TCGA-44-6776-01 21 11039319 11039319 C A BAGE2 RNA 0.04 TCGA-44-6776-01 21 11039321 11039321 A C BAGE2 RNA 0.03 TCGA-44-6776-01 21 32253450 32253450 G T KRTAP11-1 Missense_Mutation p.Q132K 0.13 tolerated(0.19) benign(0.343) TCGA-44-6776-01 22 17589773 17589773 G T IL17RA Missense_Mutation p.G555V 0.24 deleterious(0.02) possibly_damaging(0.856) TCGA-44-6776-01 22 50547205 50547205 A T MOV10L1 Silent p.A225A 0.26 TCGA-44-6776-01 2 120714600 120714600 A T PTPN4 Missense_Mutation p.T694S 0.33 deleterious(0.02) probably_damaging(0.994) TCGA-44-6776-01 2 157182172 157182172 C A NR4A2 3'UTR 0.47 TCGA-44-6776-01 2 158390390 158390390 G T ACVR1C 3'UTR 0.07 TCGA-44-6776-01 2 168107287 168107287 A C XIRP2 Missense_Mutation p.T3129P 0.31 probably_damaging(0.964) TCGA-44-6776-01 2 171260754 171260754 C A MYO3B Intron 0.30 TCGA-44-6776-01 2 179648491 179648491 G T TTN Missense_Mutation p.P933T 0.21 TCGA-44-6776-01 2 215821447 215821447 A T ABCA12 Nonsense_Mutation p.L2058* 0.21 TCGA-44-6776-01 2 217142428 217142428 C A MARCH4 Missense_Mutation p.G278W 0.27 deleterious(0) probably_damaging(0.99) TCGA-44-6776-01 2 26703817 26703817 G T OTOF Missense_Mutation p.T547K 0.26 deleterious(0) possibly_damaging(0.644) TCGA-44-6776-01 2 29455189 29455189 G T ALK Missense_Mutation p.N871K 0.33 deleterious(0) probably_damaging(1) TCGA-44-6776-01 2 32476218 32476218 G T NLRC4 Missense_Mutation p.L239M 0.30 deleterious(0.01) probably_damaging(0.986) TCGA-44-6776-01 2 37035875 37035875 G T VIT Silent p.G550G 0.23 TCGA-44-6776-01 2 37302722 37302722 C T HEATR5B Missense_Mutation p.G168D 0.19 deleterious(0) probably_damaging(0.999) TCGA-44-6776-01 2 47630474 47630474 G A MSH2 Silent p.E48E 0.26 TCGA-44-6776-01 2 70906010 70906010 C G ADD2 Silent p.T403T 0.12 TCGA-44-6776-01 2 80101445 80101446 - C CTNNA2 Frame_Shift_Ins p.A278Cfs*4 0.25 TCGA-44-6776-01 2 86305001 86305001 T A POLR1A Missense_Mutation p.N454I 0.27 deleterious(0) probably_damaging(0.976) TCGA-44-6776-01 3 108117506 108117506 C G MYH15 Missense_Mutation p.R1724T 0.48 deleterious(0.01) possibly_damaging(0.614) TCGA-44-6776-01 3 120054769 120054769 T C LRRC58 Missense_Mutation p.I178V 0.51 deleterious(0.01) possibly_damaging(0.741) TCGA-44-6776-01 3 150460021 150460021 G A SIAH2 Silent p.S294S 0.54 TCGA-44-6776-01 3 361385 361385 C G CHL1 5'UTR 0.44 TCGA-44-6776-01 3 5024990 5024991 - C BHLHE40 Frame_Shift_Ins p.T287Hfs*11 0.26 TCGA-44-6776-01 3 52643704 52643704 A T PBRM1 Missense_Mutation p.M731K 0.06 deleterious(0) possibly_damaging(0.623) TCGA-44-6776-01 3 74414733 74414733 G C CNTN3 Missense_Mutation p.A356G 0.47 tolerated(0.08) benign(0.003) TCGA-44-6776-01 4 1389175 1389175 C T CRIPAK Silent p.L292L 0.29 TCGA-44-6776-01 4 144124648 144124648 T C USP38 Silent p.L380L 0.35 TCGA-44-6776-01 4 159573154 159573154 C A RXFP1 Missense_Mutation p.P741T 0.20 tolerated_low_confidence(0.32) benign(0.007) TCGA-44-6776-01 4 169190053 169190053 G A DDX60 Missense_Mutation p.P913L 0.26 deleterious(0) probably_damaging(1) TCGA-44-6776-01 4 169611777 169611777 G A PALLD Silent p.A453A 0.28 TCGA-44-6776-01 4 17590484 17590484 C T LAP3 Silent p.L249L 0.27 TCGA-44-6776-01 4 17805113 17805113 T G DCAF16 3'UTR 0.24 TCGA-44-6776-01 4 187628565 187628565 C T FAT1 Missense_Mutation p.R806H 0.27 benign(0.012) TCGA-44-6776-01 4 1952804 1952804 G T WHSC1 Silent p.S629S 0.23 TCGA-44-6776-01 4 49005982 49005982 G T CWH43 Missense_Mutation p.A345S 0.26 deleterious(0.01) benign(0.364) TCGA-44-6776-01 4 55981449 55981449 G T KDR Missense_Mutation p.A163E 0.26 deleterious(0.03) possibly_damaging(0.821) TCGA-44-6776-01 4 73012884 73012884 C A NPFFR2 Nonsense_Mutation p.C308* 0.23 TCGA-44-6776-01 4 79432632 79432632 G T FRAS1 Missense_Mutation p.D3329Y 0.33 probably_damaging(0.947) TCGA-44-6776-01 4 9998467 9998467 T C SLC2A9 Missense_Mutation p.I116M 0.29 tolerated(0.63) probably_damaging(0.976) TCGA-44-6776-01 5 140475340 140475340 G T PCDHB2 Missense_Mutation p.Q322H 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-44-6776-01 5 140537229 140537229 G T PCDHB17 Silent p.L551L 0.42 TCGA-44-6776-01 5 140589383 140589383 A T PCDHB12 Missense_Mutation p.T302S 0.30 tolerated_low_confidence(0.11) benign(0.006) TCGA-44-6776-01 5 140736276 140736276 C G PCDHGA4 Silent p.S503S 0.30 TCGA-44-6776-01 5 150121678 150121678 G T DCTN4 Silent p.R143R 0.33 TCGA-44-6776-01 5 156592744 156592744 T C FAM71B Missense_Mutation p.T146A 0.32 deleterious(0) probably_damaging(0.992) TCGA-44-6776-01 5 15928306 15928306 C A FBXL7 Nonsense_Mutation p.Y145* 0.29 TCGA-44-6776-01 5 35957471 35957471 C A UGT3A1 Silent p.V298V 0.27 TCGA-44-6776-01 5 67589621 67589621 G T PIK3R1 Nonsense_Mutation p.E462* 0.29 TCGA-44-6776-01 5 71490202 71490202 C T MAP1B Silent p.T340T 0.30 TCGA-44-6776-01 5 72419665 72419665 C T TMEM171 Silent p.P155P 0.28 TCGA-44-6776-01 5 7831887 7831887 C T C5orf49 3'UTR 0.25 TCGA-44-6776-01 6 15452366 15452366 G T JARID2 Missense_Mutation p.K151N 0.31 deleterious(0) probably_damaging(0.997) TCGA-44-6776-01 6 160899576 160899576 C A LPAL2 RNA 0.25 TCGA-44-6776-01 6 161491814 161491814 C T MAP3K4 Missense_Mutation p.H628Y 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-44-6776-01 6 17556694 17556694 C T CAP2 3'UTR 0.29 TCGA-44-6776-01 6 24848310 24848310 C T FAM65B Missense_Mutation p.M340I 0.24 tolerated(0.37) benign(0.328) TCGA-44-6776-01 6 82936912 82936912 G T IBTK Nonsense_Mutation p.C217* 0.24 TCGA-44-6776-01 6 87795485 87795485 G T CGA Missense_Mutation p.H114N 0.36 deleterious(0) probably_damaging(0.932) TCGA-44-6776-01 7 107600230 107600230 G T LAMB1 Missense_Mutation p.N788K 0.38 tolerated(0.64) benign(0.417) TCGA-44-6776-01 7 134363847 134363847 C T BPGM 3'UTR 0.23 TCGA-44-6776-01 7 142562228 142562228 G A EPHB6 Missense_Mutation p.A224T 0.04 deleterious(0.02) possibly_damaging(0.821) TCGA-44-6776-01 7 144062360 144062360 G T ARHGEF5 Silent p.R866R 0.10 TCGA-44-6776-01 7 150644119 150644119 T C KCNH2 Missense_Mutation p.D1059G 0.35 deleterious(0) probably_damaging(0.956) TCGA-44-6776-01 7 26400636 26400636 G T SNX10 Missense_Mutation p.K22N 0.16 tolerated(0.76) benign(0.249) TCGA-44-6776-01 7 29605982 29605982 T C PRR15 Missense_Mutation p.W13R 0.28 deleterious(0.05) benign(0.403) TCGA-44-6776-01 7 35144364 35144364 G T DPY19L2P1 RNA 0.33 TCGA-44-6776-01 7 38502605 38502605 G - AMPH Frame_Shift_Del p.A287Hfs*48 0.27 TCGA-44-6776-01 7 39379533 39379533 G A POU6F2 Silent p.Q268Q 0.26 TCGA-44-6776-01 7 57528793 57528793 G T ZNF716 Missense_Mutation p.R209M 0.20 deleterious(0.05) benign(0.033) TCGA-44-6776-01 7 64167704 64167704 C T ZNF107 Missense_Mutation p.S341L 0.40 deleterious(0.01) probably_damaging(0.989) TCGA-44-6776-01 7 84666213 84666213 G C SEMA3D Missense_Mutation p.P395A 0.22 deleterious(0) probably_damaging(0.999) TCGA-44-6776-01 7 95657604 95657604 C G DYNC1I1 Missense_Mutation p.R380G 0.35 deleterious(0) probably_damaging(0.996) TCGA-44-6776-01 8 105025815 105025815 G C RIMS2 Missense_Mutation p.G1064R 0.30 deleterious_low_confidence(0.03) possibly_damaging(0.801) TCGA-44-6776-01 8 110986332 110986332 G T KCNV1 Missense_Mutation p.P96T 0.23 tolerated(0.12) benign(0.163) TCGA-44-6776-01 8 125094556 125094556 A T FER1L6 Silent p.P1416P 0.32 TCGA-44-6776-01 8 139263221 139263221 G T FAM135B Missense_Mutation p.S135R 0.25 deleterious(0) probably_damaging(0.986) TCGA-44-6776-01 8 142505489 142505489 G T MROH5 Silent p.S84S 0.28 TCGA-44-6776-01 8 142505490 142505490 G T MROH5 Missense_Mutation p.S84Y 0.29 tolerated(0.19) possibly_damaging(0.898) TCGA-44-6776-01 8 143695607 143695607 C A ARC Missense_Mutation p.G9V 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.868) TCGA-44-6776-01 8 143695608 143695608 C A ARC Missense_Mutation p.G9C 0.33 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-44-6776-01 8 143822670 143822670 A G SLURP1 Missense_Mutation p.V68A 0.39 tolerated(0.15) benign(0.136) TCGA-44-6776-01 8 143996498 143996498 C T CYP11B2 Missense_Mutation p.D187N 0.16 tolerated(0.1) benign(0.327) TCGA-44-6776-01 8 2021510 2021510 G T MYOM2 Missense_Mutation p.E350D 0.23 deleterious(0) possibly_damaging(0.626) TCGA-44-6776-01 8 2044147 2044147 T A MYOM2 Missense_Mutation p.L729H 0.24 deleterious(0) probably_damaging(0.994) TCGA-44-6776-01 8 22107690 22107690 G T POLR3D Missense_Mutation p.G342C 0.25 deleterious(0) probably_damaging(1) TCGA-44-6776-01 8 36703176 36703176 G T KCNU1 Missense_Mutation p.K594N 0.16 tolerated(0.06) benign(0.433) TCGA-44-6776-01 8 42977285 42977285 A G POMK Silent p.A106A 0.35 TCGA-44-6776-01 8 4851865 4851865 G A CSMD1 Missense_Mutation p.T25I 0.21 benign(0.039) TCGA-44-6776-01 8 48767902 48767902 T C PRKDC Silent p.R2213R 0.39 TCGA-44-6776-01 8 51664632 51664632 T A SNTG1 Missense_Mutation p.F452L 0.29 tolerated(1) benign(0.004) TCGA-44-6776-01 8 75932314 75932314 G T CRISPLD1 Missense_Mutation p.R415I 0.24 deleterious(0) probably_damaging(0.983) TCGA-44-6776-01 8 99142345 99142345 C T POP1 Missense_Mutation p.A209V 0.26 deleterious(0) probably_damaging(1) TCGA-44-6776-01 9 100455996 100455996 C T XPA Missense_Mutation p.G73E 0.18 deleterious(0) probably_damaging(0.986) TCGA-44-6776-01 9 113173762 113173762 G T SVEP1 Missense_Mutation p.R2077S 0.38 benign(0.255) TCGA-44-6776-01 9 116859704 116859704 G A KIF12 Silent p.L37L 0.23 TCGA-44-6776-01 9 123783854 123783854 C A C5 Missense_Mutation p.R412L 0.25 tolerated(0.1) benign(0.007) TCGA-44-6776-01 9 21350395 21350395 C A IFNA6 Missense_Mutation p.W164C 0.24 deleterious(0) probably_damaging(1) TCGA-44-6776-01 9 21350396 21350396 C A IFNA6 Missense_Mutation p.W164L 0.25 deleterious(0) probably_damaging(0.998) TCGA-44-6776-01 9 43627205 43627205 C A SPATA31A6 Missense_Mutation p.E494D 0.29 tolerated(0.34) benign(0.002) TCGA-44-6776-01 X 10093091 10093091 C A WWC3 Silent p.L618L 0.32 TCGA-44-6776-01 X 102529326 102529326 C A TCEAL5 Missense_Mutation p.D56Y 0.22 deleterious(0) benign(0.035) TCGA-44-6776-01 X 103080666 103080666 C A RAB9B Nonsense_Mutation p.G17* 0.29 TCGA-44-6776-01 X 104463890 104463890 G T TEX13A Missense_Mutation p.P329Q 0.30 tolerated(0.07) probably_damaging(0.965) TCGA-44-6776-01 X 108684589 108684589 C A GUCY2F Silent p.A564A 0.34 TCGA-44-6776-01 X 118109401 118109401 C T LONRF3 Missense_Mutation p.P220S 0.33 tolerated(0.18) benign(0.193) TCGA-44-6776-01 X 135279254 135279254 G A FHL1 Intron 0.05 TCGA-44-6776-01 X 135585093 135585093 C G HTATSF1 Missense_Mutation p.Q243E 0.27 tolerated(0.13) benign(0.423) TCGA-44-6776-01 X 136112642 136112642 C G GPR101 Missense_Mutation p.A398P 0.32 deleterious(0) probably_damaging(0.995) TCGA-44-6776-01 X 151818269 151818269 T A GABRQ Silent p.T225T 0.29 TCGA-44-6776-01 X 152226785 152226785 C T PNMA3 Missense_Mutation p.P458L 0.36 deleterious(0) probably_damaging(0.988) TCGA-44-6776-01 X 152958581 152958581 G T SLC6A8 Missense_Mutation p.G288V 0.31 deleterious(0) probably_damaging(1) TCGA-44-6776-01 X 153048494 153048494 G A SRPK3 Silent p.G223G 0.27 TCGA-44-6776-01 X 153135618 153135620 TTG - L1CAM In_Frame_Del p.N294del 0.39 TCGA-44-6776-01 X 17771520 17771520 C A SCML1 3'UTR 0.22 TCGA-44-6776-01 X 31645941 31645941 C G DMD Missense_Mutation p.R2689T 0.18 benign(0.004) TCGA-44-6776-01 X 3248300 3248300 G T MXRA5 Silent p.L156L 0.29 TCGA-44-6776-01 X 37029325 37029325 G T FAM47C Missense_Mutation p.G948W 0.34 tolerated(1) benign(0.013) TCGA-44-6776-01 X 52673659 52673659 C A SSX7 3'UTR 0.26 TCGA-44-6776-01 X 55172504 55172504 A G FAM104B 3'UTR 0.34 TCGA-44-6776-01 X 62570685 62570685 G T SPIN4 Missense_Mutation p.T5N 0.18 deleterious_low_confidence(0.02) unknown(0) TCGA-44-6776-01 X 69255353 69255353 G T EDA Missense_Mutation p.R357L 0.23 deleterious_low_confidence(0.05) benign(0.419) TCGA-44-6776-01 X 69550032 69550032 T A KIF4A Silent p.T307T 0.27 TCGA-44-6776-01 X 69637839 69637839 C A KIF4A Missense_Mutation p.N1119K 0.25 deleterious(0) benign(0.242) TCGA-44-6776-01 X 69670523 69670523 A T DLG3 Missense_Mutation p.E292V 0.29 deleterious(0) benign(0.001) TCGA-44-6776-01 X 70464286 70464286 G T ZMYM3 Missense_Mutation p.S1049Y 0.39 deleterious(0) probably_damaging(0.991) TCGA-44-6776-01 X 77289241 77289241 G C ATP7A Missense_Mutation p.A1145P 0.29 tolerated(0.32) benign(0.139) TCGA-44-6777-01 10 103898672 103898672 G A PPRC1 Missense_Mutation p.E176K 0.10 deleterious(0.03) benign(0.416) TCGA-44-6777-01 10 106960956 106960956 C A SORCS3 Missense_Mutation p.H736N 0.08 tolerated(0.11) benign(0.001) TCGA-44-6777-01 10 112053973 112053973 C G SMNDC1 Missense_Mutation p.D218H 0.14 deleterious(0.02) probably_damaging(0.996) TCGA-44-6777-01 10 120353949 120353949 G T PRLHR Missense_Mutation p.R270S 0.18 deleterious(0.02) benign(0.319) TCGA-44-6777-01 10 121595096 121595096 G C MCMBP Missense_Mutation p.L557V 0.10 tolerated(0.36) benign(0.034) TCGA-44-6777-01 10 135165834 135165834 C G PRAP1 Missense_Mutation p.P116A 0.09 tolerated(0.81) benign(0.115) TCGA-44-6777-01 10 15646286 15646286 C A ITGA8 Missense_Mutation p.G680V 0.17 deleterious(0) probably_damaging(1) TCGA-44-6777-01 10 23482676 23482676 A G PTF1A Silent p.L276L 0.18 TCGA-44-6777-01 10 25887611 25887611 T A GPR158 Missense_Mutation p.V1019E 0.09 deleterious(0.03) benign(0.397) TCGA-44-6777-01 10 48389623 48389623 C T RBP3 Missense_Mutation p.E419K 0.10 tolerated(0.09) possibly_damaging(0.614) TCGA-44-6777-01 10 69714383 69714383 T A HERC4 Missense_Mutation p.E777V 0.11 deleterious(0) probably_damaging(0.949) TCGA-44-6777-01 10 70154089 70154089 G C RUFY2 Nonsense_Mutation p.S208* 0.09 TCGA-44-6777-01 10 8019213 8019213 G T TAF3 Nonsense_Mutation p.E748* 0.18 TCGA-44-6777-01 10 95720197 95720197 T A PIPSL RNA 0.09 TCGA-44-6777-01 10 98411383 98411383 C T PIK3AP1 Silent p.L246L 0.11 TCGA-44-6777-01 11 102742618 102742618 G T MMP12 RNA 0.20 TCGA-44-6777-01 11 102824901 102824901 C T MMP13 Nonsense_Mutation p.W207* 0.20 TCGA-44-6777-01 11 10781721 10781721 G A CTR9 Silent p.A198A 0.07 TCGA-44-6777-01 11 107832852 107832852 A T RAB39A Missense_Mutation p.Q136H 0.24 tolerated(0.06) benign(0.119) TCGA-44-6777-01 11 118430510 118430512 TCC - IFT46 In_Frame_Del p.E12del 0.11 TCGA-44-6777-01 11 118779239 118779239 C A BCL9L Missense_Mutation p.G51V 0.12 probably_damaging(0.972) TCGA-44-6777-01 11 119183624 119183624 T A MCAM Missense_Mutation p.S199C 0.18 deleterious(0) probably_damaging(0.981) TCGA-44-6777-01 11 126134327 126134327 C T SRPR Missense_Mutation p.D545N 0.12 deleterious(0.03) possibly_damaging(0.85) TCGA-44-6777-01 11 26582728 26582728 C G MUC15 Missense_Mutation p.G324R 0.19 deleterious(0) probably_damaging(0.991) TCGA-44-6777-01 11 35287030 35287030 C G SLC1A2 Intron 0.11 TCGA-44-6777-01 11 36596398 36596398 C A RAG1 Missense_Mutation p.P515Q 0.13 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-44-6777-01 11 43852733 43852733 G A HSD17B12 Intron 0.23 TCGA-44-6777-01 11 4389086 4389087 - A OR52B4 Frame_Shift_Ins p.C147Lfs*28 0.13 TCGA-44-6777-01 11 55703541 55703541 T A OR5I1 Silent p.T112T 0.10 TCGA-44-6777-01 11 56143797 56143797 G T OR8U1 Missense_Mutation p.G233V 0.11 deleterious(0) probably_damaging(1) TCGA-44-6777-01 11 58318700 58318700 T G LPXN Silent p.A113A 0.14 TCGA-44-6777-01 11 60201330 60201330 C A MS4A5 Missense_Mutation p.N144K 0.08 tolerated(0.34) benign(0.34) TCGA-44-6777-01 11 60885907 60885907 C T CD5 Missense_Mutation p.H119Y 0.04 tolerated(1) benign(0) TCGA-44-6777-01 11 62414465 62414465 T A INTS5 3'UTR 0.20 TCGA-44-6777-01 11 62435066 62435066 G C C11orf48 Nonsense_Mutation p.S156* 0.14 TCGA-44-6777-01 11 62782143 62782143 C G SLC22A8 Silent p.L96L 0.14 TCGA-44-6777-01 11 65637376 65637376 G A EFEMP2 Missense_Mutation p.R227C 0.15 deleterious(0) probably_damaging(0.985) TCGA-44-6777-01 11 6942680 6942680 A G OR2D3 Missense_Mutation p.T150A 0.19 tolerated(0.4) benign(0.003) TCGA-44-6777-01 11 7949730 7949730 T C OR10A6 Silent p.T160T 0.11 TCGA-44-6777-01 11 8060490 8060490 G A TUB Missense_Mutation p.G24R 0.11 deleterious_low_confidence(0) benign(0.113) TCGA-44-6777-01 11 85345207 85345207 G C TMEM126B Missense_Mutation p.R94T 0.07 deleterious(0) probably_damaging(1) TCGA-44-6777-01 11 85436161 85436161 G A SYTL2 Missense_Mutation p.P447S 0.05 tolerated(1) benign(0.037) TCGA-44-6777-01 11 85593661 85593661 G A CCDC83 Missense_Mutation p.E96K 0.15 deleterious(0) probably_damaging(0.999) TCGA-44-6777-01 11 8715638 8715638 G A ST5 3'UTR 0.09 TCGA-44-6777-01 12 100200327 100200327 C T ANKS1B Missense_Mutation p.R175K 0.10 deleterious(0) benign(0.071) TCGA-44-6777-01 12 106461516 106461516 C A NUAK1 Missense_Mutation p.K350N 0.13 tolerated(0.39) possibly_damaging(0.632) TCGA-44-6777-01 12 109613836 109613836 G T ACACB Missense_Mutation p.E439D 0.09 tolerated(0.35) benign(0.042) TCGA-44-6777-01 12 109843787 109843787 G A MYO1H Missense_Mutation p.D288N 0.19 tolerated(0.45) benign(0.001) TCGA-44-6777-01 12 11174720 11174720 C T TAS2R19 Missense_Mutation p.E151K 0.10 tolerated(0.22) benign(0.021) TCGA-44-6777-01 12 113873251 113873251 G C SDSL Silent p.L187L 0.20 TCGA-44-6777-01 12 114374889 114374889 C A RBM19 Missense_Mutation p.S664I 0.09 deleterious(0.04) benign(0.01) TCGA-44-6777-01 12 124323158 124323158 C - DNAH10 Frame_Shift_Del p.F1569Sfs*24 0.12 TCGA-44-6777-01 12 125397469 125397469 G A UBC Silent p.T283T 0.05 TCGA-44-6777-01 12 125576036 125576036 C G AACS Missense_Mutation p.I179M 0.18 deleterious(0) probably_damaging(0.93) TCGA-44-6777-01 12 133209096 133209096 T A POLE Splice_Site p.X2046_splice 0.09 TCGA-44-6777-01 12 13906333 13906333 C G GRIN2B Missense_Mutation p.E310Q 0.10 tolerated(0.38) benign(0.174) TCGA-44-6777-01 12 176538 176538 G A IQSEC3 Missense_Mutation p.G164R 0.19 tolerated(0.08) possibly_damaging(0.563) TCGA-44-6777-01 12 1965188 1965188 T A CACNA2D4 Silent p.P714P 0.18 TCGA-44-6777-01 12 34175705 34175705 G T ALG10 Missense_Mutation p.Q57H 0.18 deleterious(0.01) benign(0.042) TCGA-44-6777-01 12 45417664 45417664 C A DBX2 Missense_Mutation p.M171I 0.08 tolerated(0.09) benign(0.001) TCGA-44-6777-01 12 51108375 51108375 A G DIP2B Silent p.Q949Q 0.23 TCGA-44-6777-01 12 52774887 52774887 C G KRT84 Missense_Mutation p.E394Q 0.11 deleterious(0.02) possibly_damaging(0.857) TCGA-44-6777-01 12 53189644 53189644 G C KRT3 Silent p.G61G 0.11 TCGA-44-6777-01 12 53442938 53442938 G C TENC1 Missense_Mutation p.G4A 0.13 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-44-6777-01 12 57619578 57619578 C G NXPH4 3'UTR 0.17 TCGA-44-6777-01 12 65702399 65702399 C G MSRB3 Intron 0.09 TCGA-44-6777-01 12 6749349 6749349 G A ACRBP Silent p.Y434Y 0.11 TCGA-44-6777-01 12 6884556 6884556 C A LAG3 Missense_Mutation p.P300H 0.17 tolerated(0.34) probably_damaging(0.936) TCGA-44-6777-01 12 69084516 69084516 A T NUP107 Missense_Mutation p.N98I 0.17 deleterious_low_confidence(0) benign(0.288) TCGA-44-6777-01 12 69991418 69991418 G T CCT2 Missense_Mutation p.G368V 0.16 deleterious(0.01) probably_damaging(0.953) TCGA-44-6777-01 12 75807464 75807464 A T GLIPR1L2 Silent p.I189I 0.13 TCGA-44-6777-01 12 80661057 80661057 G T OTOGL Missense_Mutation p.R796S 0.25 deleterious(0.05) possibly_damaging(0.504) TCGA-44-6777-01 12 80750640 80750640 C A OTOGL Missense_Mutation p.Q1980K 0.11 deleterious(0) possibly_damaging(0.632) TCGA-44-6777-01 12 8212740 8212740 G T C3AR1 Silent p.L14L 0.09 TCGA-44-6777-01 13 102029296 102029296 G T NALCN Missense_Mutation p.P163T 0.19 deleterious(0) probably_damaging(0.998) TCGA-44-6777-01 13 25367307 25367307 A G RNF17 Missense_Mutation p.S355G 0.16 tolerated(0.31) benign(0) TCGA-44-6777-01 13 48828025 48828025 G T ITM2B Missense_Mutation p.G67C 0.18 deleterious(0) probably_damaging(0.962) TCGA-44-6777-01 14 20528948 20528948 C G OR4L1 Missense_Mutation p.L249V 0.17 deleterious(0.01) benign(0.424) TCGA-44-6777-01 14 21860376 21860376 G A CHD8 Intron 0.12 TCGA-44-6777-01 14 21860803 21860803 G C CHD8 Missense_Mutation p.P2212A 0.09 tolerated(0.42) possibly_damaging(0.539) TCGA-44-6777-01 14 21863152 21863152 G A CHD8 Missense_Mutation p.A1770V 0.24 tolerated(0.27) possibly_damaging(0.475) TCGA-44-6777-01 14 23893993 23893993 C A MYH7 Missense_Mutation p.Q888H 0.12 tolerated(0.35) benign(0.102) TCGA-44-6777-01 14 30066936 30066936 C A PRKD1 Missense_Mutation p.R732L 0.19 deleterious(0) probably_damaging(0.998) TCGA-44-6777-01 14 50249171 50249171 G C KLHDC2 Missense_Mutation p.R347T 0.07 tolerated(0.58) benign(0.023) TCGA-44-6777-01 14 55004779 55004779 A T CGRRF1 Splice_Site p.X227_splice 0.11 TCGA-44-6777-01 14 59942718 59942718 T A L3HYPDH Nonsense_Mutation p.R270* 0.11 TCGA-44-6777-01 14 71197272 71197272 G C MAP3K9 Missense_Mutation p.P1061R 0.09 deleterious(0) probably_damaging(0.999) TCGA-44-6777-01 14 80668656 80668656 G T DIO2 3'Flank 0.12 TCGA-44-6777-01 14 94041456 94041456 T C UNC79 Missense_Mutation p.F531S 0.10 deleterious(0) probably_damaging(0.997) TCGA-44-6777-01 14 94088614 94088614 C G UNC79 Missense_Mutation p.L1502V 0.10 deleterious_low_confidence(0) benign(0.05) TCGA-44-6777-01 14 94708736 94708736 C T PPP4R4 Silent p.C419C 0.07 TCGA-44-6777-01 14 96134559 96134559 G T TCL6 Intron 0.10 TCGA-44-6777-01 15 100801810 100801810 C T ADAMTS17 Missense_Mutation p.R302Q 0.14 tolerated(0.11) benign(0.015) TCGA-44-6777-01 15 22383458 22383458 A T OR4N4 3'UTR 0.14 TCGA-44-6777-01 15 27222202 27222202 G T GABRG3 Missense_Mutation p.W36L 0.20 tolerated(0.23) possibly_damaging(0.901) TCGA-44-6777-01 15 33954863 33954863 G T RYR3 Missense_Mutation p.R1711L 0.14 probably_damaging(0.971) TCGA-44-6777-01 15 42166580 42166580 G A SPTBN5 Silent p.L1533L 0.23 TCGA-44-6777-01 15 43500462 43500462 C A EPB42 Missense_Mutation p.Q377H 0.13 deleterious(0) probably_damaging(1) TCGA-44-6777-01 15 43820365 43820365 C A MAP1A Missense_Mutation p.Q2232K 0.13 benign(0.298) TCGA-44-6777-01 15 51743895 51743895 C G DMXL2 Splice_Site p.X2878_splice 0.22 TCGA-44-6777-01 15 73617680 73617680 C A HCN4 Nonsense_Mutation p.E566* 0.18 TCGA-44-6777-01 16 10032087 10032087 G T GRIN2A Missense_Mutation p.L246I 0.11 tolerated(0.1) probably_damaging(0.942) TCGA-44-6777-01 16 11861348 11861348 C T ZC3H7A Missense_Mutation p.E483K 0.12 deleterious(0.02) possibly_damaging(0.829) TCGA-44-6777-01 16 1621515 1621515 G A IFT140 Silent p.L515L 0.13 TCGA-44-6777-01 16 25251807 25251807 T C ZKSCAN2 Missense_Mutation p.K745R 0.06 tolerated(0.23) benign(0.005) TCGA-44-6777-01 16 27441410 27441410 C A IL21R Silent p.A6A 0.14 TCGA-44-6777-01 16 28926016 28926016 C T RABEP2 Missense_Mutation p.E174K 0.10 deleterious(0.04) benign(0.014) TCGA-44-6777-01 16 30762447 30762447 G T PHKG2 Missense_Mutation p.R39L 0.10 deleterious(0) probably_damaging(1) TCGA-44-6777-01 16 31373976 31373976 G T ITGAX Missense_Mutation p.V421F 0.19 tolerated(0.07) possibly_damaging(0.79) TCGA-44-6777-01 16 33020672 33020672 G A IGHV3OR16-8 Missense_Mutation p.G27E 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.863) TCGA-44-6777-01 16 46615701 46615701 C A SHCBP1 Silent p.G653G 0.16 TCGA-44-6777-01 16 5064946 5064946 A G SEC14L5 Missense_Mutation p.H689R 0.16 tolerated_low_confidence(0.36) unknown(0) TCGA-44-6777-01 16 69725991 69725991 G A NFAT5 Missense_Mutation p.A755T 0.19 benign(0.001) TCGA-44-6777-01 16 70065846 70065846 C A MIR1972-2 3'Flank 0.19 TCGA-44-6777-01 16 706348 706348 C T WDR90 Silent p.L671L 0.21 TCGA-44-6777-01 16 89704489 89704489 G A DPEP1 Silent p.E365E 0.18 TCGA-44-6777-01 16 89704574 89704574 T G DPEP1 Missense_Mutation p.W394G 0.14 tolerated_low_confidence(0.34) benign(0) TCGA-44-6777-01 16 9857858 9857858 G A GRIN2A Silent p.N1181N 0.05 TCGA-44-6777-01 17 10448670 10448670 C A MYH2 Missense_Mutation p.M166I 0.15 deleterious(0) benign(0.103) TCGA-44-6777-01 17 11687720 11687720 C T DNAH9 Missense_Mutation p.A2642V 0.14 benign(0.005) TCGA-44-6777-01 17 18167939 18167939 T G MIEF2 Missense_Mutation p.I420S 0.14 deleterious(0) benign(0.369) TCGA-44-6777-01 17 20406464 20406464 G T RP11-434D2.7 3'Flank 0.18 TCGA-44-6777-01 17 21731267 21731267 C G UBBP4 Intron 0.22 TCGA-44-6777-01 17 27061971 27061971 C T NEK8 Silent p.I145I 0.22 TCGA-44-6777-01 17 27445428 27445428 C G MYO18A Missense_Mutation p.E620D 0.14 tolerated(0.3) benign(0.162) TCGA-44-6777-01 17 3417124 3417124 C T TRPV3 3'UTR 0.22 TCGA-44-6777-01 17 39974664 39974664 C T FKBP10 Silent p.Y204Y 0.14 TCGA-44-6777-01 17 40666456 40666456 C T ATP6V0A1 Missense_Mutation p.L801F 0.17 deleterious(0) probably_damaging(1) TCGA-44-6777-01 17 40831557 40831557 C T CCR10 3'UTR 0.09 TCGA-44-6777-01 17 44249069 44249069 T A KANSL1 Silent p.T147T 0.09 TCGA-44-6777-01 17 4863187 4863187 C T SPAG7 Missense_Mutation p.E148K 0.15 tolerated(0.46) benign(0.062) TCGA-44-6777-01 17 56780677 56780677 C T RAD51C Missense_Mutation p.S231L 0.08 tolerated(0.08) benign(0.008) TCGA-44-6777-01 17 65688837 65688837 A T PITPNC1 Missense_Mutation p.T278S 0.16 tolerated(0.09) probably_damaging(0.999) TCGA-44-6777-01 17 66883272 66883272 C A ABCA8 Splice_Site p.X1066_splice 0.32 TCGA-44-6777-01 17 72522083 72522083 G A CD300LB Silent p.C95C 0.18 TCGA-44-6777-01 17 73569271 73569271 C T LLGL2 Silent p.P879P 0.18 TCGA-44-6777-01 17 7577547 7577547 C A TP53 Missense_Mutation p.G245V 0.19 deleterious(0) probably_damaging(1) TCGA-44-6777-01 18 29039937 29039937 G T DSG3 Missense_Mutation p.G216V 0.15 deleterious(0) probably_damaging(1) TCGA-44-6777-01 18 31322919 31322919 G T ASXL3 Missense_Mutation p.R1036L 0.30 probably_damaging(0.927) TCGA-44-6777-01 18 33800118 33800118 G T MOCOS Missense_Mutation p.R633L 0.13 deleterious(0) probably_damaging(0.958) TCGA-44-6777-01 18 45371730 45371730 C A SMAD2 Missense_Mutation p.G421W 0.15 deleterious(0) probably_damaging(1) TCGA-44-6777-01 18 57013159 57013159 C A LMAN1 Missense_Mutation p.G316V 0.24 tolerated(0.15) possibly_damaging(0.824) TCGA-44-6777-01 19 10395694 10395694 G C ICAM1 Silent p.V472V 0.08 TCGA-44-6777-01 19 19121141 19121141 C G SUGP2 Missense_Mutation p.D621H 0.10 deleterious(0) probably_damaging(0.998) TCGA-44-6777-01 19 19216420 19216420 C T SLC25A42 Silent p.S88S 0.30 TCGA-44-6777-01 19 19338336 19338336 T A NCAN Missense_Mutation p.L636Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-44-6777-01 19 19454666 19454666 C T MAU2 Silent p.L332L 0.12 TCGA-44-6777-01 19 20727531 20727531 G A ZNF737 Missense_Mutation p.S493F 0.15 tolerated(0.33) probably_damaging(0.959) TCGA-44-6777-01 19 22363099 22363099 C A ZNF676 Nonsense_Mutation p.E474* 0.21 TCGA-44-6777-01 19 22847415 22847415 G T ZNF492 Missense_Mutation p.G315V 0.15 deleterious(0) probably_damaging(0.927) TCGA-44-6777-01 19 30936456 30936456 G T ZNF536 Missense_Mutation p.G663W 0.10 deleterious(0) possibly_damaging(0.759) TCGA-44-6777-01 19 31039052 31039052 C A ZNF536 Missense_Mutation p.F842L 0.23 deleterious(0.03) benign(0.005) TCGA-44-6777-01 19 32949374 32949374 C T DPY19L3 Silent p.I427I 0.05 TCGA-44-6777-01 19 37643728 37643728 T A ZNF585A Missense_Mutation p.E303V 0.17 deleterious(0) probably_damaging(0.912) TCGA-44-6777-01 19 41515256 41515256 G A CYP2B6 Missense_Mutation p.A260T 0.22 tolerated(0.09) benign(0.007) TCGA-44-6777-01 19 42492226 42492226 C T ATP1A3 Silent p.P86P 0.10 TCGA-44-6777-01 19 42819386 42819386 C G TMEM145 Missense_Mutation p.I184M 0.06 tolerated(0.19) benign(0.053) TCGA-44-6777-01 19 42819403 42819403 A T TMEM145 Missense_Mutation p.Y190F 0.09 tolerated(0.17) benign(0.17) TCGA-44-6777-01 19 44470668 44470668 C T ZNF221 Silent p.F338F 0.07 TCGA-44-6777-01 19 44778728 44778728 C A ZNF233 Missense_Mutation p.Q639K 0.26 deleterious(0.01) benign(0.006) TCGA-44-6777-01 19 48665538 48665538 C A LIG1 Nonsense_Mutation p.E30* 0.07 TCGA-44-6777-01 19 52868949 52868949 A T ZNF610 Splice_Site p.X107_splice 0.14 TCGA-44-6777-01 19 52918883 52918883 C T ZNF528 Nonsense_Mutation p.Q260* 0.07 TCGA-44-6777-01 19 53762367 53762367 G A VN1R2 Missense_Mutation p.G247R 0.12 tolerated(0.05) possibly_damaging(0.585) TCGA-44-6777-01 19 54216609 54216609 T A MIR519D RNA 0.06 TCGA-44-6777-01 19 54804218 54804218 G T LILRA3 5'UTR 0.23 TCGA-44-6777-01 19 55086935 55086935 G T LILRA2 Missense_Mutation p.G290W 0.13 deleterious(0) probably_damaging(0.999) TCGA-44-6777-01 19 55447692 55447692 C T NLRP7 Missense_Mutation p.R746H 0.07 tolerated(0.13) benign(0.002) TCGA-44-6777-01 19 57646224 57646224 A T ZIM3 3'UTR 0.27 TCGA-44-6777-01 19 58490898 58490898 C T ZNF606 Missense_Mutation p.D384N 0.15 tolerated(0.48) probably_damaging(0.989) TCGA-44-6777-01 19 58723923 58723923 G A ZNF274 Missense_Mutation p.S458N 0.07 tolerated(0.38) benign(0.002) TCGA-44-6777-01 19 6710817 6710817 C G C3 Missense_Mutation p.V507L 0.25 tolerated(0.32) benign(0.009) TCGA-44-6777-01 19 8657674 8657674 C T ADAMTS10 Silent p.L520L 0.14 TCGA-44-6777-01 19 9073651 9073651 G T MUC16 Missense_Mutation p.L4599M 0.14 unknown(0) TCGA-44-6777-01 19 9083145 9083145 C T MUC16 Silent p.L2890L 0.14 TCGA-44-6777-01 19 9452607 9452607 A T ZNF559 Silent p.L160L 0.16 TCGA-44-6777-01 19 9677452 9677452 C A ZNF121 Nonsense_Mutation p.E113* 0.17 TCGA-44-6777-01 1 1115671 1115671 A T TTLL10 Missense_Mutation p.T153S 0.30 tolerated(0.35) benign(0.013) TCGA-44-6777-01 1 113456568 113456568 G C SLC16A1 Missense_Mutation p.S483C 0.15 deleterious(0.05) possibly_damaging(0.852) TCGA-44-6777-01 1 120510124 120510124 G C NOTCH2 Nonsense_Mutation p.S462* 0.05 TCGA-44-6777-01 1 12884706 12884706 C G PRAMEF11 3'UTR 0.09 TCGA-44-6777-01 1 12918992 12918992 C A PRAMEF2 Missense_Mutation p.A43D 0.16 deleterious(0) probably_damaging(0.999) TCGA-44-6777-01 1 149783928 149783928 C T HIST2H2BF 5'UTR 0.11 TCGA-44-6777-01 1 149908142 149908142 G A MTMR11 Intron 0.16 TCGA-44-6777-01 1 152058337 152058337 C G TCHHL1 Silent p.L607L 0.20 TCGA-44-6777-01 1 152192118 152192118 C T HRNR Missense_Mutation p.G663S 0.18 unknown(0) TCGA-44-6777-01 1 152326042 152326042 C G FLG2 Missense_Mutation p.G1407A 0.07 probably_damaging(0.932) TCGA-44-6777-01 1 152586476 152586476 C A LCE3B Missense_Mutation p.H64N 0.42 deleterious_low_confidence(0.02) unknown(0) TCGA-44-6777-01 1 153430435 153430435 G A S100A7 Silent p.G51G 0.17 TCGA-44-6777-01 1 153954987 153954987 C T RAB13 Intron 0.05 TCGA-44-6777-01 1 154141852 154141852 G C TPM3 Silent p.L261L 0.05 TCGA-44-6777-01 1 155218083 155218083 C G FAM189B Missense_Mutation p.E531Q 0.08 deleterious(0.05) probably_damaging(0.985) TCGA-44-6777-01 1 161647156 161647156 G T FCGR2B Splice_Site p.X285_splice 0.19 TCGA-44-6777-01 1 161655026 161655026 G A RPL31P11 RNA 0.17 TCGA-44-6777-01 1 161953507 161953507 G A OLFML2B Silent p.D737D 0.28 TCGA-44-6777-01 1 170015946 170015946 C T KIFAP3 Missense_Mutation p.E76K 0.13 deleterious(0.03) possibly_damaging(0.639) TCGA-44-6777-01 1 170959103 170959103 G T MROH9 Missense_Mutation p.K329N 0.20 deleterious(0.05) benign(0.367) TCGA-44-6777-01 1 175375383 175375383 G T TNR Missense_Mutation p.N156K 0.17 tolerated(0.07) benign(0.049) TCGA-44-6777-01 1 179989900 179989900 G T CEP350 Missense_Mutation p.E997D 0.13 probably_damaging(0.997) TCGA-44-6777-01 1 18152740 18152740 T C ACTL8 Missense_Mutation p.I276T 0.15 tolerated(1) benign(0.003) TCGA-44-6777-01 1 190067362 190067362 T A BRINP3 Missense_Mutation p.Q696L 0.31 deleterious(0) probably_damaging(0.977) TCGA-44-6777-01 1 196696041 196696041 G T CFH Missense_Mutation p.G736V 0.17 deleterious(0) probably_damaging(1) TCGA-44-6777-01 1 197031046 197031046 A G F13B Silent p.L107L 0.13 TCGA-44-6777-01 1 197326027 197326027 G A CRB1 Missense_Mutation p.G352E 0.06 deleterious(0) probably_damaging(0.968) TCGA-44-6777-01 1 200827089 200827089 A G CAMSAP2 Missense_Mutation p.T1447A 0.27 deleterious(0) probably_damaging(0.999) TCGA-44-6777-01 1 203652479 203652479 G T ATP2B4 Missense_Mutation p.G49V 0.11 deleterious(0) probably_damaging(0.988) TCGA-44-6777-01 1 207087253 207087253 C T FAIM3 Missense_Mutation p.R75Q 0.06 deleterious(0) probably_damaging(1) TCGA-44-6777-01 1 209799153 209799153 T - LAMB3 Frame_Shift_Del p.T606Pfs*20 0.11 TCGA-44-6777-01 1 220287726 220287726 G C IARS2 Missense_Mutation p.R517P 0.28 deleterious(0) probably_damaging(0.999) TCGA-44-6777-01 1 226187006 226187006 T A SDE2 Missense_Mutation p.E3V 0.19 deleterious_low_confidence(0) possibly_damaging(0.834) TCGA-44-6777-01 1 227068353 227068353 G T PSEN2 Intron 0.07 TCGA-44-6777-01 1 230814766 230814766 G A COG2 Silent p.K378K 0.05 TCGA-44-6777-01 1 233807331 233807331 G T KCNK1 3'UTR 0.27 TCGA-44-6777-01 1 236995357 236995357 C A MTR Silent p.L389L 0.24 TCGA-44-6777-01 1 237551419 237551419 C G RYR2 Missense_Mutation p.L237V 0.13 benign(0.437) TCGA-44-6777-01 1 23759638 23759638 G A ASAP3 Missense_Mutation p.P752L 0.05 deleterious(0) probably_damaging(1) TCGA-44-6777-01 1 237806644 237806644 G T RYR2 Missense_Mutation p.K2413N 0.24 probably_damaging(0.999) TCGA-44-6777-01 1 247875386 247875386 G T OR6F1 Silent p.T224T 0.21 TCGA-44-6777-01 1 248366686 248366686 C A OR2M3 Nonsense_Mutation p.S106* 0.11 TCGA-44-6777-01 1 248524995 248524995 A G OR2T4 Missense_Mutation p.H38R 0.12 tolerated(0.64) benign(0.008) TCGA-44-6777-01 1 248685555 248685555 G T OR2G6 Missense_Mutation p.S203I 0.28 deleterious(0.04) benign(0.364) TCGA-44-6777-01 1 26688417 26688417 G T ZNF683 Missense_Mutation p.R414S 0.21 deleterious(0) benign(0.112) TCGA-44-6777-01 1 27215499 27215499 G A GPN2 Missense_Mutation p.L177F 0.06 deleterious(0.01) probably_damaging(0.957) TCGA-44-6777-01 1 34049270 34049271 CT A CSMD2 Frame_Shift_Del p.K2406Ifs*19 0.10 TCGA-44-6777-01 1 39783000 39783000 C T MACF1 Silent p.L1240L 0.12 TCGA-44-6777-01 1 39991331 39991331 T C BMP8A Missense_Mutation p.M357T 0.20 deleterious(0) possibly_damaging(0.625) TCGA-44-6777-01 1 40706012 40706012 C T RLF Missense_Mutation p.H1880Y 0.10 deleterious(0) probably_damaging(0.995) TCGA-44-6777-01 1 42049802 42049802 C A HIVEP3 Missense_Mutation p.G223C 0.11 probably_damaging(0.992) TCGA-44-6777-01 1 48694784 48694784 T C SLC5A9 Missense_Mutation p.S117P 0.09 tolerated_low_confidence(0.29) benign(0) TCGA-44-6777-01 1 62703976 62703976 C T KANK4 Silent p.A987A 0.11 TCGA-44-6777-01 1 72058514 72058514 C A NEGR1 Missense_Mutation p.S309I 0.11 deleterious(0) probably_damaging(0.996) TCGA-44-6777-01 1 74663994 74663994 C T FPGT-TNNI3K Missense_Mutation p.S24L 0.24 tolerated_low_confidence(0.13) benign(0) TCGA-44-6777-01 1 77763335 77763335 G A AK5 Silent p.K169K 0.17 TCGA-44-6777-01 1 77763337 77763337 A T AK5 Missense_Mutation p.K170M 0.18 deleterious(0) probably_damaging(0.997) TCGA-44-6777-01 1 79128523 79128523 T A IFI44 Silent p.A416A 0.13 TCGA-44-6777-01 1 85595688 85595688 C A WDR63 Missense_Mutation p.H809N 0.13 tolerated(0.57) benign(0.001) TCGA-44-6777-01 1 89735201 89735201 A G GBP5 Missense_Mutation p.L13P 0.07 deleterious(0) probably_damaging(1) TCGA-44-6777-01 1 94668512 94668512 C T ARHGAP29 Missense_Mutation p.E306K 0.09 deleterious(0) possibly_damaging(0.708) TCGA-44-6777-01 1 95712169 95712169 G A RWDD3 Missense_Mutation p.M215I 0.09 deleterious(0) probably_damaging(0.993) TCGA-44-6777-01 20 10030676 10030676 G A ANKEF1 Missense_Mutation p.D487N 0.26 tolerated(0.06) probably_damaging(0.983) TCGA-44-6777-01 20 20051546 20051546 C A C20orf26 Silent p.I64I 0.10 TCGA-44-6777-01 20 25667060 25667060 C A ZNF337 5'UTR 0.27 TCGA-44-6777-01 20 35240678 35240678 C T C20orf24 3'UTR 0.11 TCGA-44-6777-01 20 56093924 56093924 C T CTCFL Missense_Mutation p.D317N 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-44-6777-01 20 57769634 57769634 G T ZNF831 Missense_Mutation p.C1187F 0.52 deleterious(0) probably_damaging(0.997) TCGA-44-6777-01 20 6759046 6759046 C G BMP2 Missense_Mutation p.F167L 0.07 tolerated(0.64) probably_damaging(0.966) TCGA-44-6777-01 21 15561477 15561477 C G LIPI Missense_Mutation p.E125Q 0.13 tolerated(0.12) probably_damaging(0.913) TCGA-44-6777-01 21 31933508 31933508 C A KRTAP19-7 Missense_Mutation p.R34I 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-44-6777-01 21 34017287 34017287 C G SYNJ1 Missense_Mutation p.E1180Q 0.07 tolerated_low_confidence(0.19) possibly_damaging(0.541) TCGA-44-6777-01 21 47361589 47361589 C T PCBP3 Missense_Mutation p.T362M 0.20 deleterious(0) benign(0.018) TCGA-44-6777-01 22 26690269 26690269 G A SEZ6L Missense_Mutation p.V283M 0.16 tolerated(0.33) possibly_damaging(0.612) TCGA-44-6777-01 22 28315195 28315195 T A PITPNB 5'UTR 0.45 TCGA-44-6777-01 22 38890696 38890696 T A DDX17 Missense_Mutation p.S385C 0.27 tolerated(0.06) benign(0.128) TCGA-44-6777-01 2 109374925 109374925 G T RANBP2 Missense_Mutation p.W841C 0.12 deleterious(0.01) benign(0.166) TCGA-44-6777-01 2 112786085 112786085 G A MERTK Missense_Mutation p.E882K 0.04 tolerated(0.24) possibly_damaging(0.579) TCGA-44-6777-01 2 131521386 131521386 G T AMER3 Nonsense_Mutation p.E581* 0.11 TCGA-44-6777-01 2 131975931 131975931 G T POTEE 5'UTR 0.19 TCGA-44-6777-01 2 136742971 136742989 ACTTCCGCCGCGTCCATGA - DARS Splice_Site p.X17_splice 0.14 TCGA-44-6777-01 2 159488326 159488326 G T PKP4 Silent p.V405V 0.11 TCGA-44-6777-01 2 1652789 1652789 A T PXDN Missense_Mutation p.H921Q 0.19 tolerated(0.68) benign(0.01) TCGA-44-6777-01 2 1653262 1653262 C A PXDN Nonsense_Mutation p.E764* 0.17 TCGA-44-6777-01 2 175265748 175265748 A T SCRN3 Missense_Mutation p.E124D 0.15 tolerated(0.11) possibly_damaging(0.698) TCGA-44-6777-01 2 179544735 179544735 C T TTN Missense_Mutation p.E11156K 0.12 TCGA-44-6777-01 2 179560074 179560074 C A TTN Splice_Site p.X10424_splice 0.06 TCGA-44-6777-01 2 182339792 182339792 T A ITGA4 Missense_Mutation p.V142E 0.12 deleterious(0) probably_damaging(0.968) TCGA-44-6777-01 2 185802546 185802546 C T ZNF804A Missense_Mutation p.P808L 0.14 deleterious(0) probably_damaging(0.994) TCGA-44-6777-01 2 187693457 187693457 C T ZSWIM2 Missense_Mutation p.G386R 0.12 tolerated(0.23) benign(0.263) TCGA-44-6777-01 2 189929292 189929292 T A COL5A2 Silent p.P569P 0.14 TCGA-44-6777-01 2 200246493 200246493 C A SATB2 Missense_Mutation p.D133Y 0.07 deleterious(0) probably_damaging(0.99) TCGA-44-6777-01 2 207169464 207169464 T C ZDBF2 Missense_Mutation p.V71A 0.09 tolerated(1) benign(0.002) TCGA-44-6777-01 2 208489097 208489097 C T METTL21A Translation_Start_Site p.M1? 0.11 deleterious(0.01) possibly_damaging(0.698) TCGA-44-6777-01 2 210560774 210560774 G T MAP2 Missense_Mutation p.V1294L 0.18 deleterious(0) probably_damaging(0.999) TCGA-44-6777-01 2 212576896 212576896 C A ERBB4 Missense_Mutation p.D335Y 0.12 tolerated(0.46) probably_damaging(0.984) TCGA-44-6777-01 2 219206749 219206749 C G PNKD Missense_Mutation p.I221M 0.10 deleterious(0) possibly_damaging(0.761) TCGA-44-6777-01 2 232373893 232373893 C G LINC00471 RNA 0.05 TCGA-44-6777-01 2 234681013 234681013 C G UGT1A4 Silent p.G471G 0.07 TCGA-44-6777-01 2 238283131 238283131 G C COL6A3 Missense_Mutation p.I1201M 0.11 probably_damaging(0.962) TCGA-44-6777-01 2 238643909 238643909 A C LRRFIP1 Intron 0.08 TCGA-44-6777-01 2 25384028 25384028 G T POMC Silent p.T242T 0.18 TCGA-44-6777-01 2 29551314 29551314 C A ALK Missense_Mutation p.S439I 0.10 deleterious(0.01) probably_damaging(0.914) TCGA-44-6777-01 2 63667034 63667034 G A WDPCP Intron 0.15 TCGA-44-6777-01 2 65561881 65561881 C A SPRED2 Missense_Mutation p.K77N 0.16 deleterious(0) probably_damaging(1) TCGA-44-6777-01 2 73680958 73680958 C G ALMS1 Missense_Mutation p.S2434C 0.10 probably_damaging(0.994) TCGA-44-6777-01 2 74000985 74000985 C A DUSP11 Missense_Mutation p.E172D 0.12 tolerated(1) benign(0.003) TCGA-44-6777-01 2 79349171 79349171 G T REG1A Missense_Mutation p.G81C 0.11 deleterious(0) probably_damaging(0.997) TCGA-44-6777-01 2 79384695 79384695 T A REG3A Intron 0.13 TCGA-44-6777-01 2 97860624 97860624 G A ANKRD36 Missense_Mutation p.G841R 0.17 tolerated_low_confidence(0.44) benign(0.185) TCGA-44-6777-01 3 10491257 10491257 C T ATP2B2 5'UTR 0.11 TCGA-44-6777-01 3 10861452 10861466 CATCCTGGCATGGGC - SLC6A11 In_Frame_Del p.L151_I155del 0.15 TCGA-44-6777-01 3 121825068 121825068 G A CD86 Missense_Mutation p.V142I 0.19 tolerated(0.31) benign(0.065) TCGA-44-6777-01 3 124201673 124201673 G A KALRN Missense_Mutation p.G1402S 0.16 tolerated(0.18) benign(0.095) TCGA-44-6777-01 3 134880876 134880876 A G EPHB1 Missense_Mutation p.N480S 0.13 tolerated(1) benign(0.023) TCGA-44-6777-01 3 13896097 13896097 C A WNT7A Missense_Mutation p.D168Y 0.15 deleterious(0) probably_damaging(0.998) TCGA-44-6777-01 3 141535733 141535733 T C GRK7 Silent p.D501D 0.15 TCGA-44-6777-01 3 170819320 170819320 C T TNIK Missense_Mutation p.E837K 0.09 tolerated(0.23) possibly_damaging(0.519) TCGA-44-6777-01 3 178785371 178785371 C A ZMAT3 Missense_Mutation p.G57V 0.19 tolerated(0.46) benign(0) TCGA-44-6777-01 3 183211915 183211915 T A KLHL6 Missense_Mutation p.R434S 0.11 deleterious(0) probably_damaging(0.999) TCGA-44-6777-01 3 184428505 184428505 C T MAGEF1 3'UTR 0.18 TCGA-44-6777-01 3 189612133 189612133 G T TP63 Missense_Mutation p.G629C 0.17 deleterious(0) probably_damaging(0.909) TCGA-44-6777-01 3 190993124 190993124 A G UTS2B Missense_Mutation p.L84P 0.16 deleterious(0) probably_damaging(0.936) TCGA-44-6777-01 3 194118856 194118856 G C GP5 Silent p.L52L 0.14 TCGA-44-6777-01 3 25833258 25833258 C G OXSM Silent p.S249S 0.10 TCGA-44-6777-01 3 27332233 27332233 T G NEK10 Missense_Mutation p.S540R 0.11 deleterious(0) benign(0.421) TCGA-44-6777-01 3 447299 447299 G T CHL1 Missense_Mutation p.D1194Y 0.12 deleterious(0) probably_damaging(1) TCGA-44-6777-01 3 46592962 46592962 C A LRRC2 Missense_Mutation p.L40F 0.06 deleterious(0.01) possibly_damaging(0.878) TCGA-44-6777-01 3 47752263 47752263 G A SMARCC1 Silent p.F276F 0.07 TCGA-44-6777-01 3 48620085 48620085 C A COL7A1 Missense_Mutation p.G1507V 0.18 unknown(0) TCGA-44-6777-01 3 48718899 48718899 C T NCKIPSD Missense_Mutation p.E305K 0.13 tolerated(0.75) benign(0.101) TCGA-44-6777-01 3 50005024 50005024 G A RBM6 Missense_Mutation p.D56N 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-6777-01 3 52550187 52550187 C A STAB1 Missense_Mutation p.H1359Q 0.14 tolerated(0.7) benign(0.003) TCGA-44-6777-01 3 53326643 53326645 GCA - DCP1A In_Frame_Del p.A280del 0.16 TCGA-44-6777-01 3 56771215 56771215 C A ARHGEF3 Missense_Mutation p.V379L 0.07 tolerated(0.39) benign(0.001) TCGA-44-6777-01 3 74334570 74334570 C A CNTN3 Missense_Mutation p.A864S 0.11 tolerated(0.14) benign(0.347) TCGA-44-6777-01 4 108817064 108817064 G T SGMS2 Missense_Mutation p.D119Y 0.10 deleterious(0) probably_damaging(1) TCGA-44-6777-01 4 108948874 108948875 - T HADH Frame_Shift_Ins p.V224Gfs*12 0.17 TCGA-44-6777-01 4 119631390 119631390 G A METTL14 Missense_Mutation p.R435Q 0.07 tolerated_low_confidence(0.19) unknown(0) TCGA-44-6777-01 4 123234842 123234842 G T KIAA1109 Nonsense_Mutation p.E3438* 0.14 TCGA-44-6777-01 4 126242685 126242685 G T FAT4 Missense_Mutation p.V1707L 0.07 benign(0.004) TCGA-44-6777-01 4 13339545 13339545 C G HSP90AB2P RNA 0.21 TCGA-44-6777-01 4 143045852 143045852 C T INPP4B Silent p.V594V 0.12 TCGA-44-6777-01 4 151504238 151504238 C G MAB21L2 Silent p.R19R 0.28 TCGA-44-6777-01 4 156273864 156273864 C G MAP9 Missense_Mutation p.A569P 0.14 tolerated(0.14) probably_damaging(0.982) TCGA-44-6777-01 4 156618236 156618236 A G GUCY1A3 Missense_Mutation p.T73A 0.07 tolerated(0.14) possibly_damaging(0.714) TCGA-44-6777-01 4 162463837 162463837 C A FSTL5 Missense_Mutation p.V342F 0.28 deleterious(0.01) probably_damaging(0.991) TCGA-44-6777-01 4 164392983 164392983 G A TKTL2 3'UTR 0.29 TCGA-44-6777-01 4 38893400 38893400 G T FAM114A1 Missense_Mutation p.G129C 0.21 tolerated(0.09) probably_damaging(0.995) TCGA-44-6777-01 4 52861433 52861433 T A LRRC66 Silent p.T585T 0.06 TCGA-44-6777-01 4 57182101 57182101 G T KIAA1211 Silent p.V811V 0.12 TCGA-44-6777-01 4 69416468 69416468 G T UGT2B17 Missense_Mutation p.L414I 0.18 tolerated(0.13) benign(0.02) TCGA-44-6777-01 4 69416469 69416469 G T UGT2B17 Silent p.A413A 0.17 TCGA-44-6777-01 4 69512760 69512760 C T UGT2B15 3'UTR 0.14 TCGA-44-6777-01 4 69512806 69512806 C T UGT2B15 3'UTR 0.17 TCGA-44-6777-01 4 69962775 69962775 T A UGT2B7 Silent p.T179T 0.20 TCGA-44-6777-01 4 71062448 71062448 G A ODAM Missense_Mutation p.E31K 0.10 deleterious(0) possibly_damaging(0.801) TCGA-44-6777-01 4 83791564 83791564 T C SEC31A Missense_Mutation p.I266V 0.05 tolerated(0.86) benign(0.015) TCGA-44-6777-01 4 87683877 87683877 T C PTPN13 Intron 0.13 TCGA-44-6777-01 4 88767710 88767710 A G MEPE 3'UTR 0.32 TCGA-44-6777-01 4 94690553 94690553 G A GRID2 Silent p.L851L 0.12 TCGA-44-6777-01 5 110459809 110459809 A G WDR36 Missense_Mutation p.K814E 0.10 deleterious(0.01) possibly_damaging(0.791) TCGA-44-6777-01 5 113698885 113698885 C T KCNN2 Missense_Mutation p.A138V 0.13 deleterious(0) probably_damaging(0.953) TCGA-44-6777-01 5 121786248 121786248 C T SNCAIP Missense_Mutation p.S569F 0.07 deleterious(0.01) possibly_damaging(0.797) TCGA-44-6777-01 5 133702187 133702187 C A CDKL3 Missense_Mutation p.V10L 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-44-6777-01 5 134147433 134147433 C T DDX46 Silent p.F778F 0.08 TCGA-44-6777-01 5 13737491 13737491 C A DNAH5 Silent p.L3775L 0.16 TCGA-44-6777-01 5 140167047 140167047 C A PCDHA1 Missense_Mutation p.P391H 0.10 deleterious_low_confidence(0.01) benign(0.169) TCGA-44-6777-01 5 140167048 140167048 C A PCDHA1 Silent p.P391P 0.10 TCGA-44-6777-01 5 140306690 140306690 C A PCDHAC1 Silent p.P71P 0.12 TCGA-44-6777-01 5 140554442 140554442 G T PCDHB7 Missense_Mutation p.A676S 0.09 tolerated_low_confidence(0.06) benign(0.077) TCGA-44-6777-01 5 140801457 140801457 C T PCDHGA11 Silent p.P221P 0.08 TCGA-44-6777-01 5 140866246 140866246 A G PCDHGC4 Silent p.V502V 0.16 TCGA-44-6777-01 5 14479403 14479403 C T TRIO Nonsense_Mutation p.Q2063* 0.06 TCGA-44-6777-01 5 147900526 147900526 C T HTR4 Intron 0.15 TCGA-44-6777-01 5 1494959 1494959 C A LPCAT1 Missense_Mutation p.V117L 0.09 deleterious(0) possibly_damaging(0.519) TCGA-44-6777-01 5 153783750 153783750 G T GALNT10 Silent p.P381P 0.20 TCGA-44-6777-01 5 160763718 160763718 T A GABRB2 Silent p.T200T 0.16 TCGA-44-6777-01 5 161524754 161524754 G T GABRG2 Missense_Mutation p.W146C 0.22 deleterious(0) probably_damaging(0.999) TCGA-44-6777-01 5 167645439 167645439 G T TENM2 Missense_Mutation p.G1515W 0.18 deleterious(0) probably_damaging(0.999) TCGA-44-6777-01 5 170305126 170305126 G T RANBP17 Missense_Mutation p.C15F 0.14 deleterious(0) probably_damaging(0.991) TCGA-44-6777-01 5 17354001 17354001 T A CTD-2139B15.2 5'Flank 0.05 TCGA-44-6777-01 5 178581891 178581891 G A ADAMTS2 Missense_Mutation p.P388S 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-44-6777-01 5 179192504 179192504 G T MAML1 Missense_Mutation p.D165Y 0.15 deleterious(0) probably_damaging(0.974) TCGA-44-6777-01 5 19473207 19473207 T C CDH18 3'UTR 0.07 TCGA-44-6777-01 5 19747105 19747105 G T CDH18 Missense_Mutation p.P157T 0.43 deleterious(0) probably_damaging(0.998) TCGA-44-6777-01 5 21975400 21975400 C A CDH12 Missense_Mutation p.G109V 0.25 deleterious(0) probably_damaging(1) TCGA-44-6777-01 5 26902655 26902655 C A CDH9 Missense_Mutation p.D395Y 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-44-6777-01 5 26906079 26906079 C T CDH9 Missense_Mutation p.R267Q 0.05 deleterious(0.02) benign(0.033) TCGA-44-6777-01 5 26988490 26988490 C T CDH9 Splice_Site 0.21 TCGA-44-6777-01 5 33576335 33576335 G T ADAMTS12 Missense_Mutation p.R1266S 0.07 tolerated(0.92) benign(0.039) TCGA-44-6777-01 5 3599846 3599846 G T IRX1 Missense_Mutation p.A262S 0.23 tolerated(0.8) benign(0.001) TCGA-44-6777-01 5 37201763 37201763 C T C5orf42 Missense_Mutation p.G1146D 0.04 deleterious(0) probably_damaging(0.994) TCGA-44-6777-01 5 38959970 38959970 G A RICTOR Silent p.T654T 0.08 TCGA-44-6777-01 5 39202316 39202316 G T FYB Missense_Mutation p.D259E 0.09 tolerated(0.52) benign(0.015) TCGA-44-6777-01 5 41382556 41382556 C A PLCXD3 Missense_Mutation p.V62F 0.13 deleterious(0.03) benign(0.25) TCGA-44-6777-01 5 50689501 50689501 C G ISL1 3'UTR 0.05 TCGA-44-6777-01 5 52145269 52145269 A T ITGA1 Missense_Mutation p.E44D 0.10 tolerated(0.16) possibly_damaging(0.62) TCGA-44-6777-01 5 52369034 52369034 C A ITGA2 Missense_Mutation p.T839N 0.05 deleterious(0) possibly_damaging(0.718) TCGA-44-6777-01 5 54415705 54415705 T G CDC20B Silent p.A461A 0.29 TCGA-44-6777-01 5 56160759 56160759 C T MAP3K1 Nonsense_Mutation p.Q345* 0.08 TCGA-44-6777-01 5 82940367 82940367 G T HAPLN1 Missense_Mutation p.A197D 0.13 deleterious(0) probably_damaging(0.993) TCGA-44-6777-01 6 131277563 131277563 A G EPB41L2 Silent p.D21D 0.06 TCGA-44-6777-01 6 136582513 136582513 T A BCLAF1 Missense_Mutation p.S883C 0.10 deleterious(0) possibly_damaging(0.843) TCGA-44-6777-01 6 136589341 136589341 A G BCLAF1 Missense_Mutation p.Y786H 0.05 deleterious(0.02) possibly_damaging(0.607) TCGA-44-6777-01 6 25600607 25600607 G T LRRC16A Missense_Mutation p.R1062L 0.17 deleterious(0.03) possibly_damaging(0.809) TCGA-44-6777-01 6 25862059 25862059 G T SLC17A3 Missense_Mutation p.L168I 0.10 tolerated(0.13) possibly_damaging(0.732) TCGA-44-6777-01 6 26225732 26225732 G A HIST1H3E Missense_Mutation p.R117H 0.07 deleterious_low_confidence(0.05) benign(0.409) TCGA-44-6777-01 6 27107277 27107277 G A HIST1H4I Missense_Mutation p.E64K 0.22 tolerated(0.07) benign(0.35) TCGA-44-6777-01 6 27107279 27107279 G A HIST1H4I Silent p.E64E 0.21 TCGA-44-6777-01 6 28483474 28483474 A G GPX6 Missense_Mutation p.V16A 0.13 tolerated_low_confidence(1) benign(0.002) TCGA-44-6777-01 6 2890614 2890614 G A SERPINB9 Missense_Mutation p.A305V 0.12 tolerated(0.26) benign(0.013) TCGA-44-6777-01 6 29365221 29365221 C G OR12D2 Missense_Mutation p.L249V 0.15 deleterious(0.02) possibly_damaging(0.558) TCGA-44-6777-01 6 30131581 30131582 CC - TRIM15 Frame_Shift_Del p.P41Rfs*102 0.13 TCGA-44-6777-01 6 30862315 30862315 G A DDR1 Silent p.T460T 0.07 TCGA-44-6777-01 6 31133041 31133041 A G POU5F1 Missense_Mutation p.V227A 0.26 tolerated(0.13) benign(0.002) TCGA-44-6777-01 6 32261492 32261492 C T C6orf10 Missense_Mutation p.G320R 0.16 tolerated(0.14) possibly_damaging(0.846) TCGA-44-6777-01 6 32261493 32261493 C T C6orf10 Silent p.Q319Q 0.16 TCGA-44-6777-01 6 33172420 33172420 G C HSD17B8 5'UTR 0.18 TCGA-44-6777-01 6 35424046 35424046 G - FANCE Frame_Shift_Del p.A258Qfs*38 0.20 TCGA-44-6777-01 6 35837307 35837307 A C SRPK1 Missense_Mutation p.C455G 0.08 tolerated(0.43) benign(0) TCGA-44-6777-01 6 41168762 41168762 G A TREML2 5'UTR 0.24 TCGA-44-6777-01 6 41250404 41250404 T C TREM1 Silent p.L45L 0.10 TCGA-44-6777-01 6 42957397 42957397 A T PPP2R5D Nonsense_Mutation p.K26* 0.19 TCGA-44-6777-01 6 43604174 43604174 G C MAD2L1BP Missense_Mutation p.E67Q 0.05 deleterious_low_confidence(0.05) possibly_damaging(0.606) TCGA-44-6777-01 6 45515072 45515072 G C RUNX2 3'UTR 0.10 TCGA-44-6777-01 6 51890383 51890383 C A PKHD1 Missense_Mutation p.V1409L 0.19 tolerated(0.14) possibly_damaging(0.517) TCGA-44-6777-01 6 52149468 52149468 G A MCM3 Missense_Mutation p.A47V 0.27 tolerated(0.11) unknown(0) TCGA-44-6777-01 6 62757886 62757886 C A KHDRBS2 Missense_Mutation p.G78V 0.11 deleterious(0) probably_damaging(1) TCGA-44-6777-01 7 100549604 100549604 A C MUC3A Missense_Mutation p.Q62P 0.12 deleterious(0.05) unknown(0) TCGA-44-6777-01 7 105662817 105662817 C G CDHR3 Missense_Mutation p.L667V 0.07 tolerated(0.11) benign(0.011) TCGA-44-6777-01 7 107569639 107569640 - TT LAMB1 Frame_Shift_Ins p.T1586Kfs*11 0.13 TCGA-44-6777-01 7 117864800 117864800 G A ANKRD7 5'UTR 0.18 TCGA-44-6777-01 7 123508376 123508376 G T HYAL4 Missense_Mutation p.V17L 0.13 tolerated_low_confidence(0.22) benign(0) TCGA-44-6777-01 7 134222989 134222989 C A AKR1B10 Missense_Mutation p.P262H 0.17 deleterious(0) probably_damaging(0.998) TCGA-44-6777-01 7 138556069 138556069 G C KIAA1549 Nonsense_Mutation p.S1462* 0.08 TCGA-44-6777-01 7 141464496 141464496 C G TAS2R3 Missense_Mutation p.L180V 0.25 tolerated(0.55) benign(0.078) TCGA-44-6777-01 7 14217662 14217662 A C DGKB Missense_Mutation p.V747G 0.13 deleterious(0.01) benign(0.102) TCGA-44-6777-01 7 142563293 142563293 G A EPHB6 Missense_Mutation p.R337H 0.23 tolerated(1) benign(0.009) TCGA-44-6777-01 7 142881181 142881181 T C TAS2R39 Missense_Mutation p.F224L 0.15 deleterious(0.03) possibly_damaging(0.734) TCGA-44-6777-01 7 149492429 149492429 A T SSPO RNA 0.11 TCGA-44-6777-01 7 150417566 150417566 C T GIMAP1 Silent p.A158A 0.10 TCGA-44-6777-01 7 151876995 151876995 C T KMT2C Missense_Mutation p.A2456T 0.13 benign(0.005) TCGA-44-6777-01 7 44149642 44149642 C A AEBP1 Missense_Mutation p.H393Q 0.23 deleterious(0.03) probably_damaging(0.998) TCGA-44-6777-01 7 47970755 47970755 C A PKD1L1 Missense_Mutation p.S228I 0.14 tolerated(0.08) benign(0.193) TCGA-44-6777-01 7 50070835 50070835 T A ZPBP Missense_Mutation p.N187Y 0.11 deleterious(0) probably_damaging(1) TCGA-44-6777-01 7 55496113 55496113 C G LANCL2 Missense_Mutation p.P411A 0.15 tolerated(0.15) probably_damaging(0.948) TCGA-44-6777-01 7 7636007 7636007 C T MIOS Silent p.V772V 0.10 TCGA-44-6777-01 7 76984630 76984630 A G GSAP Missense_Mutation p.L413S 0.12 deleterious(0) probably_damaging(0.998) TCGA-44-6777-01 7 89790346 89790352 ATATTTT - STEAP1 Frame_Shift_Del p.Q104Hfs*29 0.28 TCGA-44-6777-01 8 104412574 104412574 T A SLC25A32 3'UTR 0.23 TCGA-44-6777-01 8 10555137 10555137 C A C8orf74 Silent p.I90I 0.10 TCGA-44-6777-01 8 110520333 110520333 T G PKHD1L1 Missense_Mutation p.I3745M 0.07 deleterious(0) possibly_damaging(0.907) TCGA-44-6777-01 8 113299475 113299475 C A CSMD3 Missense_Mutation p.G3050V 0.07 deleterious(0) probably_damaging(0.911) TCGA-44-6777-01 8 131826459 131826459 G T ADCY8 Silent p.A923A 0.29 TCGA-44-6777-01 8 141262908 141262908 C A TRAPPC9 Missense_Mutation p.C898F 0.39 deleterious(0.01) probably_damaging(0.992) TCGA-44-6777-01 8 22161574 22161574 G A PIWIL2 Missense_Mutation p.E408K 0.08 tolerated(0.05) possibly_damaging(0.466) TCGA-44-6777-01 8 3063023 3063023 T A CSMD1 Intron 0.31 TCGA-44-6777-01 8 42297122 42297122 G A SLC20A2 Silent p.L260L 0.09 TCGA-44-6777-01 8 68070788 68070788 A C CSPP1 Missense_Mutation p.E778A 0.23 tolerated(0.22) probably_damaging(0.998) TCGA-44-6777-01 8 87587995 87587995 G T CNGB3 3'UTR 0.24 TCGA-44-6777-01 8 87587996 87587996 G T CNGB3 3'UTR 0.24 TCGA-44-6777-01 8 88885671 88885671 G T DCAF4L2 Missense_Mutation p.L177I 0.09 deleterious(0.02) benign(0.391) TCGA-44-6777-01 8 95507124 95507124 T A KIAA1429 Silent p.P1535P 0.20 TCGA-44-6777-01 9 113704241 113704241 A - LPAR1 Frame_Shift_Del p.Y85Ifs*3 0.17 TCGA-44-6777-01 9 120475379 120475379 G T TLR4 Missense_Mutation p.D325Y 0.17 tolerated(0.09) benign(0.002) TCGA-44-6777-01 9 127990243 127990243 A G RABEPK Missense_Mutation p.H194R 0.25 deleterious(0) possibly_damaging(0.838) TCGA-44-6777-01 9 130941408 130941408 G A CIZ1 Nonsense_Mutation p.Q360* 0.24 TCGA-44-6777-01 9 18684728 18684728 G A ADAMTSL1 Missense_Mutation p.E502K 0.10 deleterious(0) probably_damaging(0.999) TCGA-44-6777-01 9 18950803 18950803 C T FAM154A Silent p.R57R 0.19 TCGA-44-6777-01 9 79318919 79318919 G T PRUNE2 Missense_Mutation p.T2537K 0.15 tolerated(0.12) benign(0.01) TCGA-44-6777-01 X 100106267 100106267 C T NOX1 Silent p.R284R 0.24 TCGA-44-6777-01 X 105011541 105011541 A T IL1RAPL2 Missense_Mutation p.N650Y 0.19 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-44-6777-01 X 109943926 109943926 G A CHRDL1 Missense_Mutation p.H189Y 0.09 deleterious(0.03) benign(0.114) TCGA-44-6777-01 X 110459767 110459767 C A PAK3 Missense_Mutation p.S545Y 0.10 deleterious(0) probably_damaging(0.954) TCGA-44-6777-01 X 110494870 110494870 C A CAPN6 Missense_Mutation p.R267I 0.08 deleterious(0.03) probably_damaging(0.928) TCGA-44-6777-01 X 118221462 118221462 C A KIAA1210 Missense_Mutation p.S1244I 0.14 deleterious(0.01) possibly_damaging(0.474) TCGA-44-6777-01 X 119694494 119694494 G T CUL4B Intron 0.12 TCGA-44-6777-01 X 130220361 130220361 C G ARHGAP36 Missense_Mutation p.A447G 0.27 deleterious(0) possibly_damaging(0.827) TCGA-44-6777-01 X 135427235 135427235 C A GPR112 Missense_Mutation p.A457E 0.10 deleterious(0.01) benign(0.024) TCGA-44-6777-01 X 136113029 136113029 C T GPR101 Missense_Mutation p.E269K 0.10 tolerated(0.12) benign(0.031) TCGA-44-6777-01 X 138644074 138644074 T A F9 Missense_Mutation p.D410E 0.18 deleterious(0) probably_damaging(0.999) TCGA-44-6777-01 X 138644077 138644077 T G F9 Missense_Mutation p.S411R 0.17 deleterious(0) probably_damaging(1) TCGA-44-6777-01 X 142716499 142716499 C G SLITRK4 Missense_Mutation p.S809T 0.08 tolerated(0.11) benign(0.07) TCGA-44-6777-01 X 1460679 1460679 G T IL3RA Silent p.T7T 0.08 TCGA-44-6777-01 X 148564241 148564241 G A IDS 3'UTR 0.12 TCGA-44-6777-01 X 150345268 150345268 G T GPR50 Silent p.P25P 0.11 TCGA-44-6777-01 X 151896287 151896287 G T MAGEA12 3'Flank 0.09 TCGA-44-6777-01 X 153039543 153039543 T A PLXNB3 Missense_Mutation p.L1193Q 0.14 deleterious(0) probably_damaging(0.972) TCGA-44-6777-01 X 15311352 15311352 C T ASB11 Missense_Mutation p.G154R 0.16 deleterious(0.03) possibly_damaging(0.777) TCGA-44-6777-01 X 153284753 153284753 G A IRAK1 Missense_Mutation p.P111S 0.07 tolerated(0.09) benign(0.082) TCGA-44-6777-01 X 154065930 154065930 A T F8 Missense_Mutation p.V2333E 0.13 tolerated(0.91) benign(0.01) TCGA-44-6777-01 X 154157435 154157435 G T F8 Missense_Mutation p.L1544I 0.08 tolerated(0.28) benign(0.008) TCGA-44-6777-01 X 154490325 154490325 G A RAB39B Silent p.R135R 0.09 TCGA-44-6777-01 X 154736778 154736778 C A TMLHE Missense_Mutation p.C259F 0.08 deleterious(0.02) probably_damaging(0.997) TCGA-44-6777-01 X 18802079 18802079 A T PPEF1 Silent p.T275T 0.22 TCGA-44-6777-01 X 19020988 19020988 G T GPR64 Missense_Mutation p.L736I 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-44-6777-01 X 26157547 26157547 C A MAGEB18 Missense_Mutation p.L149I 0.21 deleterious(0.01) possibly_damaging(0.558) TCGA-44-6777-01 X 35969251 35969251 G T CXorf22 Silent p.V220V 0.13 TCGA-44-6777-01 X 39923699 39923699 C A BCOR Missense_Mutation p.R1131L 0.12 tolerated(0.13) benign(0.153) TCGA-44-6777-01 X 41196688 41196688 G A DDX3X Missense_Mutation p.D25N 0.05 tolerated(0.12) benign(0.003) TCGA-44-6777-01 X 46712938 46712938 G T RP2 Nonsense_Mutation p.G44* 0.06 TCGA-44-6777-01 X 48458017 48458017 T G WDR13 Missense_Mutation p.S145R 0.07 deleterious(0.04) possibly_damaging(0.614) TCGA-44-6777-01 X 54264888 54264888 T C WNK3 Missense_Mutation p.R1301G 0.21 deleterious(0.04) benign(0.097) TCGA-44-6777-01 X 55052311 55052311 C A ALAS2 Silent p.L41L 0.12 TCGA-44-6777-01 X 5821268 5821269 - A NLGN4X Frame_Shift_Ins p.W484Lfs*8 0.09 TCGA-44-6777-01 X 69717029 69717029 G A DLG3 Intron 0.07 TCGA-44-6777-01 X 70356805 70356805 C T MED12 Missense_Mutation p.P1826L 0.11 benign(0.062) TCGA-44-6777-01 X 71426054 71426055 - T ERCC6L Frame_Shift_Ins p.E855Rfs*12 0.12 TCGA-44-6777-01 X 73960592 73960592 G T KIAA2022 Missense_Mutation p.P1267H 0.12 deleterious_low_confidence(0) possibly_damaging(0.779) TCGA-44-6777-01 X 73961412 73961412 C T KIAA2022 Missense_Mutation p.D994N 0.22 tolerated(0.12) possibly_damaging(0.515) TCGA-44-6777-01 X 83319979 83319979 C A RPS6KA6 Missense_Mutation p.K704N 0.07 deleterious(0.01) benign(0.208) TCGA-44-6777-01 X 83362701 83362701 G C RPS6KA6 Missense_Mutation p.F347L 0.06 deleterious(0.02) possibly_damaging(0.504) TCGA-44-6777-01 X 83724224 83724224 T A HDX Silent p.L169L 0.16 TCGA-44-6777-01 X 84559397 84559397 C A POF1B Silent p.L506L 0.25 TCGA-44-6777-01 X 91132305 91132305 G T PCDH11X Missense_Mutation p.D356Y 0.16 deleterious(0) probably_damaging(0.985) TCGA-44-6777-01 X 92965126 92965126 G A FAM133A Silent p.K236K 0.11 TCGA-44-6777-01 X 99920554 99920554 G T SRPX2 Missense_Mutation p.E227D 0.07 tolerated(0.29) probably_damaging(0.994) TCGA-44-6778-01 10 101464343 101464343 G A ENTPD7 Missense_Mutation p.R573H 0.17 deleterious(0.04) benign(0.067) TCGA-44-6778-01 10 102753055 102753055 G A C10orf2 Missense_Mutation p.G615S 0.13 deleterious(0) probably_damaging(0.996) TCGA-44-6778-01 10 112360870 112360870 A C SMC3 Missense_Mutation p.T876P 0.20 tolerated(0.19) possibly_damaging(0.845) TCGA-44-6778-01 10 118196354 118196354 A G PNLIPRP3 Missense_Mutation p.I61V 0.28 tolerated(0.13) benign(0.002) TCGA-44-6778-01 10 135106639 135106639 G A TUBGCP2 Silent p.L338L 0.26 TCGA-44-6778-01 10 13541840 13541840 C T BEND7 Missense_Mutation p.G77E 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-6778-01 10 14996039 14996039 C T DCLRE1C 5'UTR 0.15 TCGA-44-6778-01 10 16975227 16975227 C A CUBN Missense_Mutation p.G1995C 0.26 deleterious(0) probably_damaging(0.992) TCGA-44-6778-01 10 16975228 16975228 C A CUBN Silent p.P1994P 0.25 TCGA-44-6778-01 10 24959146 24959146 C A ARHGAP21 Splice_Site p.X81_splice 0.25 TCGA-44-6778-01 10 24959147 24959147 C A ARHGAP21 Missense_Mutation p.K81N 0.25 deleterious(0.02) probably_damaging(0.979) TCGA-44-6778-01 10 35894512 35894512 T C GJD4 Missense_Mutation p.L6S 0.10 tolerated(0.15) benign(0.071) TCGA-44-6778-01 10 48389678 48389678 C A RBP3 Silent p.A400A 0.26 TCGA-44-6778-01 10 50945852 50945852 C T OGDHL Missense_Mutation p.S857N 0.19 tolerated(0.44) benign(0.005) TCGA-44-6778-01 10 51464849 51464849 G T AGAP7 Missense_Mutation p.T536K 0.40 deleterious(0.05) benign(0.019) TCGA-44-6778-01 10 55566772 55566772 C T PCDH15 Missense_Mutation p.S1538N 0.14 tolerated_low_confidence(0.28) benign(0.045) TCGA-44-6778-01 10 64968929 64968929 T A JMJD1C Missense_Mutation p.S921C 0.07 deleterious(0) probably_damaging(0.971) TCGA-44-6778-01 10 70143611 70143611 C G RUFY2 Missense_Mutation p.D330H 0.24 deleterious(0.01) probably_damaging(0.96) TCGA-44-6778-01 10 72490001 72490001 C A ADAMTS14 Silent p.P366P 0.13 TCGA-44-6778-01 10 73766983 73766983 C G CHST3 Missense_Mutation p.T65S 0.37 tolerated_low_confidence(0.24) probably_damaging(0.98) TCGA-44-6778-01 10 74660154 74660154 C A OIT3 Missense_Mutation p.D152E 0.15 tolerated(0.12) benign(0.086) TCGA-44-6778-01 10 7786869 7786869 C G ITIH2 Missense_Mutation p.L842V 0.22 deleterious(0) probably_damaging(1) TCGA-44-6778-01 10 93000258 93000258 G T PCGF5 Missense_Mutation p.V44F 0.18 deleterious(0.02) benign(0.149) TCGA-44-6778-01 10 95720012 95720012 G A PIPSL RNA 0.08 TCGA-44-6778-01 10 95931002 95931002 A T PLCE1 Nonsense_Mutation p.K520* 0.14 TCGA-44-6778-01 10 99968844 99968844 G C R3HCC1L Missense_Mutation p.V325L 0.22 tolerated(0.27) benign(0.012) TCGA-44-6778-01 11 108383289 108383289 C A EXPH5 Missense_Mutation p.C982F 0.14 tolerated(0.07) benign(0.208) TCGA-44-6778-01 11 110327730 110327730 G T FDX1 Missense_Mutation p.E133D 0.26 deleterious(0.03) possibly_damaging(0.527) TCGA-44-6778-01 11 110327731 110327731 G T FDX1 Nonsense_Mutation p.E134* 0.26 TCGA-44-6778-01 11 11292687 11292687 T A GALNT18 3'UTR 0.20 TCGA-44-6778-01 11 123471176 123471176 C T GRAMD1B Missense_Mutation p.H181Y 0.17 deleterious(0) benign(0.309) TCGA-44-6778-01 11 125617679 125617679 C A PATE1 Missense_Mutation p.T70K 0.24 tolerated(0.11) benign(0.157) TCGA-44-6778-01 11 133790843 133790843 G A IGSF9B Missense_Mutation p.P926L 0.21 deleterious(0) probably_damaging(0.999) TCGA-44-6778-01 11 134239728 134239728 G T GLB1L2 Missense_Mutation p.D353Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-44-6778-01 11 13427330 13427330 G C BTBD10 Silent p.L294L 0.26 TCGA-44-6778-01 11 16760379 16760379 A T C11orf58 Silent p.P18P 0.22 TCGA-44-6778-01 11 17035740 17035740 A G PLEKHA7 Missense_Mutation p.L32P 0.32 deleterious(0.02) benign(0.184) TCGA-44-6778-01 11 18750445 18750445 G A PTPN5 3'UTR 0.28 TCGA-44-6778-01 11 22364896 22364896 G T SLC17A6 Missense_Mutation p.R148L 0.23 tolerated(0.17) benign(0.217) TCGA-44-6778-01 11 22391656 22391656 C A SLC17A6 Nonsense_Mutation p.C321* 0.19 TCGA-44-6778-01 11 26353816 26353816 A C ANO3 5'UTR 0.23 TCGA-44-6778-01 11 27016134 27016134 G T FIBIN Missense_Mutation p.D21Y 0.31 deleterious_low_confidence(0.02) probably_damaging(0.951) TCGA-44-6778-01 11 30032966 30032966 G A KCNA4 Silent p.G420G 0.15 TCGA-44-6778-01 11 31312315 31312315 G T DCDC1 Missense_Mutation p.P280H 0.24 tolerated(0.07) probably_damaging(0.938) TCGA-44-6778-01 11 3381672 3381675 CAGT AGG ZNF195 Frame_Shift_Del p.D188Afs*5 0.20 TCGA-44-6778-01 11 46905469 46905469 C A LRP4 Missense_Mutation p.W855C 0.19 deleterious(0) probably_damaging(1) TCGA-44-6778-01 11 55606872 55606872 C A OR5D16 Silent p.I215I 0.24 TCGA-44-6778-01 11 55798481 55798481 A T OR5AS1 Missense_Mutation p.Q196L 0.18 deleterious(0) benign(0.307) TCGA-44-6778-01 11 56344790 56344790 C A OR5M10 Missense_Mutation p.M136I 0.18 deleterious(0) probably_damaging(0.989) TCGA-44-6778-01 11 57137380 57137380 C G P2RX3 Missense_Mutation p.I368M 0.23 tolerated(0.13) benign(0) TCGA-44-6778-01 11 5809776 5809776 G C OR52N1 Missense_Mutation p.L91V 0.08 tolerated(0.39) benign(0.021) TCGA-44-6778-01 11 58207550 58207550 G C OR5B12 Silent p.L25L 0.24 TCGA-44-6778-01 11 59132201 59132201 G T OR5AN1 Missense_Mutation p.Q90H 0.17 tolerated(0.17) benign(0.002) TCGA-44-6778-01 11 6024013 6024013 G C OR56A4 Silent p.S122S 0.18 TCGA-44-6778-01 11 6024014 6024014 G T OR56A4 Missense_Mutation p.S122Y 0.17 deleterious(0) probably_damaging(0.978) TCGA-44-6778-01 11 6129809 6129809 C A OR56B4 Missense_Mutation p.H267Q 0.18 deleterious(0.04) benign(0.174) TCGA-44-6778-01 11 61725728 61725728 C A BEST1 Silent p.V215V 0.11 TCGA-44-6778-01 11 66033336 66033336 C T KLC2 Silent p.P485P 0.10 TCGA-44-6778-01 11 6815838 6815838 C A OR6A2 3'UTR 0.19 TCGA-44-6778-01 11 68315605 68315605 T C PPP6R3 Missense_Mutation p.I162T 0.23 deleterious(0.03) benign(0.162) TCGA-44-6778-01 11 6866978 6866978 C T OR10A5 Missense_Mutation p.T22I 0.23 tolerated(0.2) benign(0.128) TCGA-44-6778-01 11 69933978 69933978 C A ANO1 Silent p.R77R 0.17 TCGA-44-6778-01 11 70279782 70279782 G T CTTN Missense_Mutation p.D455Y 0.19 deleterious(0) possibly_damaging(0.457) TCGA-44-6778-01 11 7111236 7111236 A T RBMXL2 Silent p.G295G 0.22 TCGA-44-6778-01 11 92535025 92535025 G T FAT3 Missense_Mutation p.W2949L 0.15 benign(0.005) TCGA-44-6778-01 11 93808458 93808458 C A HEPHL1 Missense_Mutation p.F541L 0.28 deleterious(0) possibly_damaging(0.826) TCGA-44-6778-01 12 101005823 101005823 G T GAS2L3 Missense_Mutation p.G117C 0.31 deleterious(0) probably_damaging(0.977) TCGA-44-6778-01 12 111350930 111350930 G - MYL2 Frame_Shift_Del p.T125Rfs*22 0.12 TCGA-44-6778-01 12 18552630 18552630 C A PIK3C2G Missense_Mutation p.R681S 0.17 deleterious(0) probably_damaging(1) TCGA-44-6778-01 12 1943774 1943774 A T LRTM2 Missense_Mutation p.I334F 0.31 deleterious(0.01) possibly_damaging(0.776) TCGA-44-6778-01 12 24048926 24048926 C T SOX5 Missense_Mutation p.G24E 0.11 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-44-6778-01 12 33532767 33532767 C G SYT10 Missense_Mutation p.E500D 0.19 deleterious(0.04) benign(0.022) TCGA-44-6778-01 12 39947896 39947896 C T ABCD2 Missense_Mutation p.G681R 0.13 deleterious(0) probably_damaging(0.998) TCGA-44-6778-01 12 43823527 43823527 T C ADAMTS20 Missense_Mutation p.S1128G 0.20 deleterious(0.01) benign(0.016) TCGA-44-6778-01 12 44193198 44193198 T A TWF1 Intron 0.24 TCGA-44-6778-01 12 50190676 50190676 G A NCKAP5L Missense_Mutation p.R323C 0.39 tolerated_low_confidence(0.07) benign(0.001) TCGA-44-6778-01 12 57603849 57603849 C G LRP1 Silent p.L4159L 0.09 TCGA-44-6778-01 12 57894234 57894235 TG - MARS Frame_Shift_Del p.C408Wfs*3 0.14 TCGA-44-6778-01 12 6435620 6435620 G A PLEKHG6 Silent p.E517E 0.09 TCGA-44-6778-01 12 70980899 70980899 T A PTPRB Missense_Mutation p.K733N 0.09 deleterious(0.02) benign(0.444) TCGA-44-6778-01 12 8813485 8813485 G T MFAP5 Missense_Mutation p.P23H 0.27 deleterious(0.01) probably_damaging(0.933) TCGA-44-6778-01 12 98938261 98938261 T A TMPO Silent p.I235I 0.13 TCGA-44-6778-01 13 21217673 21217673 G T IFT88 Missense_Mutation p.V597F 0.25 deleterious(0.01) benign(0.158) TCGA-44-6778-01 13 25914357 25914357 C G NUPL1 3'UTR 0.29 TCGA-44-6778-01 14 101193398 101193398 G A DLK1 5'UTR 0.24 TCGA-44-6778-01 14 105407065 105407065 C T AHNAK2 Missense_Mutation p.S4908N 0.14 possibly_damaging(0.514) TCGA-44-6778-01 14 106369488 106369488 C T IGHD4-11 Silent p.%3D 0.26 TCGA-44-6778-01 14 106926344 106926344 C A IGHV3-43 Missense_Mutation p.W66C 0.07 deleterious_low_confidence(0.01) benign(0.3) TCGA-44-6778-01 14 29237772 29237772 G - FOXG1 Frame_Shift_Del p.S430Afs*5 0.25 TCGA-44-6778-01 14 33147594 33147594 G T AKAP6 Missense_Mutation p.Q936H 0.18 tolerated(0.14) benign(0.006) TCGA-44-6778-01 14 35253077 35253077 T A BAZ1A Missense_Mutation p.T630S 0.22 tolerated(0.25) possibly_damaging(0.899) TCGA-44-6778-01 14 44974010 44974010 C A FSCB Missense_Mutation p.E727D 0.14 tolerated(0.18) unknown(0) TCGA-44-6778-01 14 45711635 45711635 G C MIS18BP1 Missense_Mutation p.Q249E 0.15 tolerated(0.05) benign(0.063) TCGA-44-6778-01 14 57684697 57684697 T G EXOC5 Intron 0.11 TCGA-44-6778-01 14 58056110 58056110 T A SLC35F4 Silent p.S173S 0.14 TCGA-44-6778-01 14 58772783 58772783 A G ARID4A Missense_Mutation p.Q76R 0.17 deleterious(0.01) probably_damaging(0.914) TCGA-44-6778-01 14 63920523 63920523 G C PPP2R5E Missense_Mutation p.L80V 0.17 tolerated(0.76) benign(0.008) TCGA-44-6778-01 14 86088698 86088698 G T FLRT2 Silent p.R280R 0.19 TCGA-44-6778-01 15 24922707 24922707 C A NPAP1 Missense_Mutation p.L565I 0.28 tolerated(0.22) possibly_damaging(0.877) TCGA-44-6778-01 15 25465662 25465662 T A SNORD115-27 RNA 0.27 TCGA-44-6778-01 15 41794614 41794614 C T ITPKA Silent p.S341S 0.26 TCGA-44-6778-01 15 49917565 49917565 C T DTWD1 Silent p.F67F 0.16 TCGA-44-6778-01 15 51975475 51975475 A G SCG3 Missense_Mutation p.I81V 0.30 tolerated_low_confidence(0.48) benign(0.31) TCGA-44-6778-01 15 55724738 55724738 T A DYX1C1 Silent p.V370V 0.26 TCGA-44-6778-01 15 66777401 66777401 T C MAP2K1 Missense_Mutation p.M256T 0.20 deleterious(0) possibly_damaging(0.574) TCGA-44-6778-01 15 73615894 73615894 G T HCN4 Missense_Mutation p.S847Y 0.18 deleterious_low_confidence(0.01) unknown(0) TCGA-44-6778-01 15 81224242 81224242 C A KIAA1199 Silent p.I885I 0.33 TCGA-44-6778-01 16 19884010 19884010 G T GPRC5B Missense_Mutation p.A53D 0.42 deleterious(0) possibly_damaging(0.511) TCGA-44-6778-01 16 20043415 20043415 G T GPR139 Missense_Mutation p.S235Y 0.35 deleterious(0.02) probably_damaging(0.929) TCGA-44-6778-01 16 20448612 20448612 G T ACSM5 Missense_Mutation p.V487L 0.18 deleterious(0) possibly_damaging(0.796) TCGA-44-6778-01 16 2203211 2203211 C A RAB26 Missense_Mutation p.T219K 0.35 tolerated(0.29) benign(0.011) TCGA-44-6778-01 16 23360173 23360173 G C SCNN1B Missense_Mutation p.V85L 0.22 tolerated(0.11) benign(0.01) TCGA-44-6778-01 16 28926032 28926032 C A RABEP2 Silent p.A168A 0.22 TCGA-44-6778-01 16 47622833 47622833 G T PHKB Silent p.L296L 0.23 TCGA-44-6778-01 16 66969550 66969550 C A CES2 Missense_Mutation p.H68Q 0.22 tolerated(0.2) benign(0.142) TCGA-44-6778-01 16 67006842 67006842 G C CES3 Missense_Mutation p.G536R 0.24 tolerated(0.08) benign(0.14) TCGA-44-6778-01 16 71713315 71713315 T G PHLPP2 Silent p.P338P 0.17 TCGA-44-6778-01 16 72135088 72135089 AG - DHX38 Frame_Shift_Del p.K462Gfs*27 0.13 TCGA-44-6778-01 16 72829024 72829024 C A ZFHX3 Missense_Mutation p.Q2519H 0.19 unknown(0) TCGA-44-6778-01 16 77317919 77317919 C T ADAMTS18 Silent p.Q1200Q 0.09 TCGA-44-6778-01 16 81171057 81171057 G A PKD1L2 5'Flank 0.19 TCGA-44-6778-01 16 85101003 85101003 G T KIAA0513 Missense_Mutation p.G109V 0.09 tolerated(0.09) probably_damaging(0.915) TCGA-44-6778-01 16 89661869 89661869 C G CPNE7 Missense_Mutation p.S541C 0.20 deleterious(0) probably_damaging(0.992) TCGA-44-6778-01 17 10299915 10299915 G A MYH8 Silent p.L1495L 0.32 TCGA-44-6778-01 17 10356559 10356559 G T MYH4 Missense_Mutation p.H1007Q 0.26 tolerated(0.08) benign(0.024) TCGA-44-6778-01 17 10400385 10400385 C A MYH1 Splice_Site p.X1552_splice 0.17 TCGA-44-6778-01 17 10430373 10430373 C A MYH2 Missense_Mutation p.G1291V 0.10 deleterious(0) probably_damaging(0.986) TCGA-44-6778-01 17 1631425 1631425 G T WDR81 Missense_Mutation p.A1058S 0.67 tolerated(0.83) benign(0.017) TCGA-44-6778-01 17 27041710 27041710 C G RAB34 Missense_Mutation p.S301T 0.08 tolerated(0.23) benign(0.013) TCGA-44-6778-01 17 3119640 3119640 C A OR1A1 Silent p.S242S 0.30 TCGA-44-6778-01 17 33491121 33491121 T C UNC45B Missense_Mutation p.Y363H 0.09 deleterious(0) possibly_damaging(0.808) TCGA-44-6778-01 17 37093351 37093351 A G FBXO47 3'UTR 0.27 TCGA-44-6778-01 17 41738613 41738613 G A MEOX1 Missense_Mutation p.P97L 0.12 deleterious(0.01) benign(0.164) TCGA-44-6778-01 17 48267222 48267222 G A COL1A1 Missense_Mutation p.P871S 0.21 unknown(0) TCGA-44-6778-01 17 55962798 55962798 C A CUEDC1 Missense_Mutation p.R43L 0.44 deleterious(0.04) probably_damaging(0.935) TCGA-44-6778-01 17 60088407 60088407 C A MED13 Missense_Mutation p.D491Y 0.14 deleterious(0) probably_damaging(0.909) TCGA-44-6778-01 17 60348811 60348811 C T TBC1D3P2 RNA 0.11 TCGA-44-6778-01 17 61988470 61988470 T A CSHL1 Intron 0.25 TCGA-44-6778-01 17 62018120 62018120 G T SCN4A 3'UTR 0.17 TCGA-44-6778-01 17 71426691 71426691 G - SDK2 Frame_Shift_Del p.M515Wfs*5 0.27 TCGA-44-6778-01 17 7230117 7230117 C T NEURL4 Silent p.K335K 0.28 TCGA-44-6778-01 17 73096184 73096184 G T SLC16A5 Silent p.A142A 0.24 TCGA-44-6778-01 17 7324683 7324683 C T SPEM1 Missense_Mutation p.A230V 0.23 tolerated(0.18) benign(0.14) TCGA-44-6778-01 17 73774911 73774911 C T H3F3B Missense_Mutation p.A88T 0.19 tolerated_low_confidence(0.16) benign(0.038) TCGA-44-6778-01 17 74900403 74900403 T C MGAT5B Missense_Mutation p.F208L 0.18 tolerated(0.05) benign(0.22) TCGA-44-6778-01 17 7577587 7577587 T A TP53 Missense_Mutation p.I232F 0.22 deleterious(0) probably_damaging(0.951) TCGA-44-6778-01 17 76203015 76203015 G T AFMID Missense_Mutation p.Q308H 0.21 deleterious_low_confidence(0.02) probably_damaging(0.957) TCGA-44-6778-01 17 7696322 7696322 C A DNAH2 Missense_Mutation p.S2456R 0.28 benign(0.121) TCGA-44-6778-01 17 79425854 79425854 G T RP11-1055B8.7 Missense_Mutation p.V1822L 0.41 probably_damaging(0.995) TCGA-44-6778-01 17 9737166 9737166 C A GLP2R Missense_Mutation p.Q78K 0.25 tolerated(0.2) benign(0.004) TCGA-44-6778-01 18 19995630 19995630 A T CTAGE1 Silent p.A715A 0.32 TCGA-44-6778-01 18 19996301 19996301 G T CTAGE1 Missense_Mutation p.P492T 0.25 deleterious(0.02) possibly_damaging(0.499) TCGA-44-6778-01 18 23713962 23713962 C A PSMA8 Silent p.V11V 0.23 TCGA-44-6778-01 18 28574440 28574440 C A DSC3 Intron 0.31 TCGA-44-6778-01 18 2945804 2945804 C A LPIN2 Intron 0.19 TCGA-44-6778-01 18 32886652 32886652 G T ZNF271 RNA 0.28 TCGA-44-6778-01 18 33706670 33706670 C A SLC39A6 Missense_Mutation p.D101Y 0.14 deleterious(0.03) probably_damaging(0.99) TCGA-44-6778-01 18 43204691 43204691 A T SLC14A2 Missense_Mutation p.Y21F 0.17 deleterious_low_confidence(0.01) benign(0.424) TCGA-44-6778-01 18 44555056 44555056 A T TCEB3C Silent p.A386A 0.02 TCGA-44-6778-01 18 66504561 66504561 T C CCDC102B Silent p.Y187Y 0.33 TCGA-44-6778-01 18 67563048 67563048 C T CD226 Missense_Mutation p.V206I 0.14 tolerated(0.73) benign(0.003) TCGA-44-6778-01 18 67563049 67563049 G T CD226 Missense_Mutation p.S205R 0.14 deleterious(0) probably_damaging(0.975) TCGA-44-6778-01 18 72999000 72999000 G T TSHZ1 Missense_Mutation p.K501N 0.08 deleterious(0.01) benign(0.025) TCGA-44-6778-01 18 77805852 77805852 G T RBFA Silent p.A243A 0.32 TCGA-44-6778-01 19 10610382 10610382 T C KEAP1 Missense_Mutation p.M110V 0.33 deleterious(0) probably_damaging(0.995) TCGA-44-6778-01 19 10692296 10692296 T C AP1M2 Missense_Mutation p.Q138R 0.28 deleterious(0.03) benign(0.315) TCGA-44-6778-01 19 15752358 15752358 T A CYP4F3 Missense_Mutation p.C45S 0.30 tolerated(0.18) benign(0.003) TCGA-44-6778-01 19 16339013 16339013 G C AP1M1 Missense_Mutation p.M306I 0.20 tolerated(0.1) benign(0.02) TCGA-44-6778-01 19 19369598 19369598 G T HAPLN4 Missense_Mutation p.A184E 0.29 deleterious(0.01) probably_damaging(0.992) TCGA-44-6778-01 19 19371853 19371853 T A HAPLN4 Nonsense_Mutation p.K85* 0.24 TCGA-44-6778-01 19 19375400 19375400 C G TM6SF2 3'UTR 0.33 TCGA-44-6778-01 19 20591773 20591773 T G ZNF826P Intron 0.21 TCGA-44-6778-01 19 23927160 23927160 C T ZNF681 Missense_Mutation p.E398K 0.20 deleterious(0.01) possibly_damaging(0.733) TCGA-44-6778-01 19 2834217 2834217 G T ZNF554 Missense_Mutation p.Q328H 0.28 tolerated(0.1) benign(0.026) TCGA-44-6778-01 19 31039383 31039383 G T ZNF536 Missense_Mutation p.D953Y 0.07 deleterious(0) possibly_damaging(0.653) TCGA-44-6778-01 19 33602647 33602647 C T GPATCH1 Silent p.L535L 0.15 TCGA-44-6778-01 19 35790540 35790540 G T MAG Nonsense_Mutation p.E167* 0.21 TCGA-44-6778-01 19 35850707 35850707 C G FFAR3 Missense_Mutation p.S305R 0.15 tolerated(0.54) benign(0) TCGA-44-6778-01 19 38931504 38931504 G T RYR1 Missense_Mutation p.Q55H 0.30 probably_damaging(0.997) TCGA-44-6778-01 19 38937347 38937347 G A RYR1 Missense_Mutation p.E247K 0.13 probably_damaging(0.997) TCGA-44-6778-01 19 46733631 46733631 C T IGFL1 Silent p.V60V 0.22 TCGA-44-6778-01 19 46973123 46973123 C T PNMAL1 Silent p.K390K 0.09 TCGA-44-6778-01 19 47856580 47856580 G A DHX34 Missense_Mutation p.R98H 0.13 tolerated(0.15) benign(0.001) TCGA-44-6778-01 19 47935571 47935571 C T SLC8A2 Missense_Mutation p.G748S 0.21 deleterious(0) probably_damaging(1) TCGA-44-6778-01 19 49147768 49147768 C T CA11 Silent p.R67R 0.10 TCGA-44-6778-01 19 49573357 49573357 C A KCNA7 Missense_Mutation p.W445L 0.24 tolerated_low_confidence(0.7) benign(0.035) TCGA-44-6778-01 19 50412101 50412101 C T NUP62 Missense_Mutation p.A322T 0.08 tolerated(0.43) benign(0.034) TCGA-44-6778-01 19 52130747 52130747 C A SIGLEC5 Missense_Mutation p.G417V 0.20 deleterious(0) probably_damaging(0.923) TCGA-44-6778-01 19 54760090 54760090 C T LILRB5 Silent p.E157E 0.27 TCGA-44-6778-01 19 54802512 54802512 G T LILRA3 Missense_Mutation p.P310H 0.25 deleterious(0) probably_damaging(0.999) TCGA-44-6778-01 19 55107721 55107721 G T LILRA1 Silent p.V342V 0.22 TCGA-44-6778-01 19 55445881 55445881 G T NLRP7 Missense_Mutation p.P816Q 0.24 deleterious(0) possibly_damaging(0.77) TCGA-44-6778-01 19 57325950 57325950 C A PEG3 Missense_Mutation p.C1287F 0.27 deleterious(0.05) probably_damaging(1) TCGA-44-6778-01 19 57328654 57328654 T C PEG3 Missense_Mutation p.R386G 0.24 deleterious(0) probably_damaging(0.919) TCGA-44-6778-01 19 57985284 57985284 G T ZNF772 Missense_Mutation p.S276R 0.21 deleterious(0) benign(0.167) TCGA-44-6778-01 19 58945489 58945489 T C ZNF132 Missense_Mutation p.N441S 0.23 tolerated(1) benign(0.018) TCGA-44-6778-01 19 9361944 9361944 C A OR7E24 Silent p.T75T 0.24 TCGA-44-6778-01 1 101705386 101705386 C T S1PR1 Silent p.C282C 0.21 TCGA-44-6778-01 1 104166580 104166580 C A AMY2A Silent p.V398V 0.22 TCGA-44-6778-01 1 108309106 108309106 G T VAV3 Missense_Mutation p.Q262K 0.13 tolerated(0.37) benign(0.06) TCGA-44-6778-01 1 114680279 114680279 G - SYT6 Frame_Shift_Del p.Y219Mfs*24 0.28 TCGA-44-6778-01 1 12785399 12785399 G T AADACL3 Silent p.L163L 0.21 TCGA-44-6778-01 1 142713463 142713463 C A RP11-417J8.6 RNA 0.16 TCGA-44-6778-01 1 145555761 145555761 G T ANKRD35 Missense_Mutation p.A37S 0.34 tolerated(0.54) possibly_damaging(0.694) TCGA-44-6778-01 1 151079676 151079676 A C GABPB2 Silent p.V300V 0.19 TCGA-44-6778-01 1 151108132 151108132 T C SEMA6C Silent p.P456P 0.13 TCGA-44-6778-01 1 152127701 152127701 C A RPTN Missense_Mutation p.G625V 0.13 deleterious(0) probably_damaging(0.937) TCGA-44-6778-01 1 153409692 153409692 T A S100A7L2 Missense_Mutation p.S61C 0.17 deleterious(0) probably_damaging(0.938) TCGA-44-6778-01 1 155327419 155327419 C A ASH1L Missense_Mutation p.R2306L 0.11 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-44-6778-01 1 156815556 156815556 C T INSRR Missense_Mutation p.G677R 0.12 tolerated(0.37) benign(0.003) TCGA-44-6778-01 1 156873709 156873709 G T PEAR1 Splice_Site 0.41 TCGA-44-6778-01 1 158604367 158604367 C A SPTA1 Missense_Mutation p.R1844L 0.19 tolerated(0.2) possibly_damaging(0.676) TCGA-44-6778-01 1 158614124 158614124 C A SPTA1 Missense_Mutation p.R1419S 0.17 tolerated(0.56) benign(0.153) TCGA-44-6778-01 1 159558125 159558125 C T APCS Missense_Mutation p.T100I 0.15 tolerated(0.3) benign(0.06) TCGA-44-6778-01 1 160582310 160582310 C A SLAMF1 Missense_Mutation p.A309S 0.28 tolerated(0.09) benign(0.382) TCGA-44-6778-01 1 161487775 161487775 G T FCGR2A Missense_Mutation p.R264L 0.25 tolerated(0.15) benign(0.132) TCGA-44-6778-01 1 162335086 162335086 A G NOS1AP Intron 0.26 TCGA-44-6778-01 1 171300844 171300844 G T FMO4 Missense_Mutation p.G184C 0.15 deleterious(0) probably_damaging(0.995) TCGA-44-6778-01 1 181708384 181708384 T A CACNA1E Silent p.A1238A 0.37 TCGA-44-6778-01 1 184764063 184764063 T C FAM129A 3'UTR 0.19 TCGA-44-6778-01 1 186062758 186062758 C T HMCN1 Missense_Mutation p.L3385F 0.13 possibly_damaging(0.791) TCGA-44-6778-01 1 186367533 186367533 A G C1orf27 Missense_Mutation p.Y290C 0.34 deleterious(0) possibly_damaging(0.68) TCGA-44-6778-01 1 19644153 19644153 G T PQLC2 5'UTR 0.21 TCGA-44-6778-01 1 196971786 196971786 G T CFHR5 Missense_Mutation p.R441L 0.20 tolerated(0.09) benign(0.002) TCGA-44-6778-01 1 214478535 214478535 A G SMYD2 Missense_Mutation p.E60G 0.18 tolerated(0.05) possibly_damaging(0.458) TCGA-44-6778-01 1 216040409 216040409 C A USH2A Missense_Mutation p.A2929S 0.18 benign(0.044) TCGA-44-6778-01 1 222800922 222800922 G T MIA3 Silent p.T120T 0.11 TCGA-44-6778-01 1 236911057 236911057 G T ACTN2 Missense_Mutation p.K499N 0.17 tolerated(0.17) probably_damaging(0.944) TCGA-44-6778-01 1 237729891 237729891 G T RYR2 Missense_Mutation p.G1080V 0.24 benign(0) TCGA-44-6778-01 1 237777447 237777447 C A RYR2 Silent p.A1673A 0.23 TCGA-44-6778-01 1 237780585 237780585 G T RYR2 Splice_Site p.X1906_splice 0.28 TCGA-44-6778-01 1 238045794 238045794 G T ZP4 Silent p.I517I 0.17 TCGA-44-6778-01 1 240072216 240072216 G T CHRM3 Missense_Mutation p.A489S 0.28 deleterious(0) probably_damaging(0.925) TCGA-44-6778-01 1 241798123 241798123 C T CHML Missense_Mutation p.A316T 0.20 tolerated(0.17) benign(0.028) TCGA-44-6778-01 1 24418670 24418670 A G MYOM3 Missense_Mutation p.I409T 0.19 deleterious(0.01) possibly_damaging(0.72) TCGA-44-6778-01 1 248039439 248039439 A G TRIM58 Missense_Mutation p.K370R 0.25 tolerated(0.08) benign(0.135) TCGA-44-6778-01 1 248513010 248513010 G A OR14C36 Missense_Mutation p.V312M 0.15 deleterious(0.01) benign(0.168) TCGA-44-6778-01 1 248616999 248616999 G T OR2T2 Missense_Mutation p.A301S 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-44-6778-01 1 248813994 248813994 G T OR2T27 Missense_Mutation p.S64R 0.12 deleterious(0.01) probably_damaging(0.976) TCGA-44-6778-01 1 248845146 248845146 C A OR14I1 Missense_Mutation p.A154S 0.18 tolerated(1) benign(0.417) TCGA-44-6778-01 1 33330312 33330312 C A FNDC5 Nonsense_Mutation p.E121* 0.25 TCGA-44-6778-01 1 39322631 39322631 T C RRAGC Missense_Mutation p.M121V 0.22 tolerated(0.37) benign(0) TCGA-44-6778-01 1 47685325 47685325 G T TAL1 3'UTR 0.53 TCGA-44-6778-01 1 52849096 52849096 C T ORC1 Missense_Mutation p.R670Q 0.12 deleterious(0) probably_damaging(1) TCGA-44-6778-01 1 55273638 55273638 G A C1orf177 Missense_Mutation p.R145Q 0.28 deleterious(0.01) probably_damaging(0.993) TCGA-44-6778-01 1 62713182 62713182 G T KANK4 Missense_Mutation p.L949M 0.19 deleterious(0) probably_damaging(0.961) TCGA-44-6778-01 1 62713183 62713183 G T KANK4 Silent p.L948L 0.20 TCGA-44-6778-01 1 76190403 76190403 C T ACADM 5'Flank 0.23 TCGA-44-6778-01 1 78546432 78546432 A G GIPC2 Missense_Mutation p.D105G 0.28 deleterious(0) probably_damaging(0.999) TCGA-44-6778-01 1 94337787 94337787 T C DNTTIP2 Silent p.E636E 0.15 TCGA-44-6778-01 1 9714445 9714445 G A C1orf200 Missense_Mutation p.P17L 0.21 tolerated_low_confidence(0.13) possibly_damaging(0.859) TCGA-44-6778-01 20 10025083 10025083 G T ANKEF1 Silent p.G196G 0.18 TCGA-44-6778-01 20 23545530 23545530 T A CST9L 3'UTR 0.08 TCGA-44-6778-01 20 23666528 23666528 C - CST4 3'UTR 0.24 TCGA-44-6778-01 20 35176463 35176463 G - MYL9 Frame_Shift_Del p.G72Afs*2 0.27 TCGA-44-6778-01 20 3527985 3527985 T C ATRN Silent p.N264N 0.06 TCGA-44-6778-01 20 3674161 3674161 G T SIGLEC1 Nonsense_Mutation p.Y1147* 0.21 TCGA-44-6778-01 20 376888 376888 G A TRIB3 Missense_Mutation p.G211R 0.31 deleterious(0) probably_damaging(1) TCGA-44-6778-01 20 40739070 40739070 G T PTPRT Missense_Mutation p.H1053N 0.22 deleterious(0.01) benign(0.015) TCGA-44-6778-01 20 42984471 42984471 G C R3HDML 3'Flank 0.12 TCGA-44-6778-01 20 43836284 43836284 C T SEMG1 Missense_Mutation p.H116Y 0.12 tolerated(0.05) possibly_damaging(0.486) TCGA-44-6778-01 20 43836956 43836956 A G SEMG1 Missense_Mutation p.S340G 0.11 tolerated(1) benign(0.007) TCGA-44-6778-01 20 47865914 47865914 C A ZNFX1 Missense_Mutation p.R1216L 0.38 deleterious(0) probably_damaging(1) TCGA-44-6778-01 20 9543540 9543540 G A PAK7 Silent p.T538T 0.22 TCGA-44-6778-01 20 9543572 9543572 C T PAK7 Missense_Mutation p.G528S 0.20 deleterious(0) probably_damaging(1) TCGA-44-6778-01 21 10910351 10910351 C A TPTE Missense_Mutation p.G469C 0.21 tolerated(1) benign(0.01) TCGA-44-6778-01 21 31744130 31744130 G T KRTAP13-2 Missense_Mutation p.S134R 0.33 tolerated(0.06) benign(0.217) TCGA-44-6778-01 21 31802964 31802964 C G KRTAP13-4 Missense_Mutation p.S124C 0.22 deleterious(0.02) benign(0.412) TCGA-44-6778-01 21 31933446 31933446 C T KRTAP19-7 Missense_Mutation p.G55R 0.30 tolerated_low_confidence(0.49) unknown(0) TCGA-44-6778-01 21 33346920 33346920 T A HUNK Missense_Mutation p.L355Q 0.40 deleterious(0) probably_damaging(0.993) TCGA-44-6778-01 22 24718090 24718090 G T SPECC1L Missense_Mutation p.R381L 0.12 tolerated(0.26) probably_damaging(0.967) TCGA-44-6778-01 22 26164978 26164978 G T MYO18B Missense_Mutation p.L365F 0.27 tolerated_low_confidence(0.15) benign(0.128) TCGA-44-6778-01 22 28193499 28193499 C A MN1 Silent p.G1011G 0.14 TCGA-44-6778-01 22 28193500 28193500 C A MN1 Missense_Mutation p.G1011V 0.14 possibly_damaging(0.502) TCGA-44-6778-01 22 29837555 29837555 C G RFPL1 Missense_Mutation p.T133R 0.11 deleterious(0.01) probably_damaging(0.984) TCGA-44-6778-01 22 38321897 38321897 G T MICALL1 Missense_Mutation p.A438S 0.23 tolerated(0.71) benign(0.001) TCGA-44-6778-01 22 43870647 43870647 C T MPPED1 Silent p.I146I 0.15 TCGA-44-6778-01 22 46655394 46655394 G T PKDREJ Silent p.R1276R 0.21 TCGA-44-6778-01 2 106690424 106690424 G T C2orf40 Silent p.R70R 0.23 TCGA-44-6778-01 2 108489102 108489102 A G RGPD4 Missense_Mutation p.R1548G 0.13 tolerated(0.05) benign(0) TCGA-44-6778-01 2 114257837 114257837 G T FOXD4L1 Missense_Mutation p.G335V 0.22 deleterious(0) benign(0.397) TCGA-44-6778-01 2 128324349 128324349 C G MYO7B Missense_Mutation p.N139K 0.29 deleterious(0) possibly_damaging(0.805) TCGA-44-6778-01 2 141299376 141299376 G T LRP1B Silent p.I2453I 0.30 TCGA-44-6778-01 2 15307192 15307192 C G NBAS Missense_Mutation p.A2366P 0.22 deleterious(0.02) possibly_damaging(0.878) TCGA-44-6778-01 2 159389749 159389749 G T PKP4 Missense_Mutation p.R18L 0.23 tolerated(0.24) benign(0.002) TCGA-44-6778-01 2 166179948 166179948 G T SCN2A Missense_Mutation p.G652C 0.23 deleterious(0) probably_damaging(1) TCGA-44-6778-01 2 168104772 168104772 A C XIRP2 Silent p.P2290P 0.29 TCGA-44-6778-01 2 176973884 176973884 C A HOXD11 3'UTR 0.27 TCGA-44-6778-01 2 178417116 178417116 C A TTC30B Nonsense_Mutation p.E126* 0.26 TCGA-44-6778-01 2 179418668 179418668 C T TTN Missense_Mutation p.E29724K 0.20 TCGA-44-6778-01 2 179701637 179701637 C A CCDC141 Nonsense_Mutation p.E1437* 0.21 TCGA-44-6778-01 2 182543136 182543136 C A NEUROD1 Missense_Mutation p.W151L 0.20 tolerated(0.07) possibly_damaging(0.722) TCGA-44-6778-01 2 185802212 185802212 A T ZNF804A Missense_Mutation p.T697S 0.18 tolerated(0.47) benign(0.001) TCGA-44-6778-01 2 192821012 192821012 G T TMEFF2 Missense_Mutation p.H280N 0.23 tolerated(0.11) benign(0.139) TCGA-44-6778-01 2 196681688 196681688 C A DNAH7 Splice_Site p.X3142_splice 0.21 TCGA-44-6778-01 2 198571261 198571261 G T MARS2 Missense_Mutation p.G378C 0.18 deleterious(0) probably_damaging(0.997) TCGA-44-6778-01 2 206992579 206992579 G T NDUFS1 Missense_Mutation p.A623E 0.10 deleterious(0) probably_damaging(0.991) TCGA-44-6778-01 2 212522553 212522553 C A ERBB4 Silent p.G624G 0.25 TCGA-44-6778-01 2 215855534 215855534 G T ABCA12 Silent p.T1172T 0.14 TCGA-44-6778-01 2 231090572 231090572 G T SP140 Missense_Mutation p.G5C 0.15 deleterious_low_confidence(0.01) unknown(0) TCGA-44-6778-01 2 232389863 232389863 C A NMUR1 Missense_Mutation p.R391M 0.23 deleterious(0) probably_damaging(0.959) TCGA-44-6778-01 2 234652077 234652077 C G UGT1A10 Intron 0.22 TCGA-44-6778-01 2 26203668 26203668 C T KIF3C Silent p.E373E 0.15 TCGA-44-6778-01 2 33572548 33572548 C T LTBP1 Missense_Mutation p.T1324I 0.10 tolerated(0.08) benign(0.298) TCGA-44-6778-01 2 63217871 63217871 G T EHBP1 Missense_Mutation p.D948Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-44-6778-01 2 69092865 69092865 G T BMP10 Silent p.P391P 0.10 TCGA-44-6778-01 2 71838610 71838610 C T DYSF Silent p.L1359L 0.15 TCGA-44-6778-01 2 77745781 77745781 G T LRRTM4 Missense_Mutation p.S405Y 0.29 deleterious(0.01) possibly_damaging(0.646) TCGA-44-6778-01 2 89084304 89084304 G C ANKRD36BP2 RNA 0.22 TCGA-44-6778-01 3 11301761 11301761 A G HRH1 Missense_Mutation p.I346M 0.35 tolerated(0.14) benign(0.02) TCGA-44-6778-01 3 113376161 113376161 G T KIAA2018 Missense_Mutation p.N1456K 0.14 probably_damaging(0.998) TCGA-44-6778-01 3 113804843 113804843 A T QTRTD1 3'UTR 0.36 TCGA-44-6778-01 3 119445029 119445029 C A MAATS1 Missense_Mutation p.P232T 0.20 deleterious(0) probably_damaging(1) TCGA-44-6778-01 3 120973916 120973916 T C STXBP5L Missense_Mutation p.I539T 0.10 deleterious(0.05) benign(0.371) TCGA-44-6778-01 3 121822487 121822487 C A CD86 Missense_Mutation p.L65M 0.31 deleterious(0) probably_damaging(0.999) TCGA-44-6778-01 3 122645244 122645244 G T SEMA5B Silent p.T431T 0.19 TCGA-44-6778-01 3 132345611 132345611 A G ACAD11 Missense_Mutation p.V374A 0.20 tolerated(0.4) benign(0.001) TCGA-44-6778-01 3 138474811 138474811 T G PIK3CB Missense_Mutation p.K61T 0.15 tolerated(0.1) possibly_damaging(0.698) TCGA-44-6778-01 3 142542439 142542439 G T PCOLCE2 Missense_Mutation p.A295D 0.12 tolerated(0.07) benign(0.022) TCGA-44-6778-01 3 157131722 157131722 T A VEPH1 Missense_Mutation p.Y285F 0.29 tolerated(0.69) benign(0.042) TCGA-44-6778-01 3 170858263 170858263 C A TNIK Missense_Mutation p.Q419H 0.11 tolerated(0.08) unknown(0) TCGA-44-6778-01 3 184428789 184428789 C G MAGEF1 Missense_Mutation p.R274P 0.14 tolerated(0.15) possibly_damaging(0.453) TCGA-44-6778-01 3 185774902 185774902 C A ETV5 Missense_Mutation p.G391C 0.16 deleterious(0) probably_damaging(1) TCGA-44-6778-01 3 186954283 186954283 C A MASP1 Missense_Mutation p.G459V 0.21 deleterious(0) probably_damaging(0.999) TCGA-44-6778-01 3 3143466 3143466 C A IL5RA Missense_Mutation p.G93C 0.28 deleterious(0) possibly_damaging(0.799) TCGA-44-6778-01 3 48726009 48726009 G A IP6K2 Silent p.F326F 0.35 TCGA-44-6778-01 3 49935561 49935561 C A MST1R Silent p.L601L 0.28 TCGA-44-6778-01 3 51274918 51274918 C A DOCK3 Intron 0.44 TCGA-44-6778-01 3 54676191 54676191 G T CACNA2D3 Missense_Mutation p.A364S 0.38 deleterious(0) probably_damaging(0.998) TCGA-44-6778-01 3 74384005 74384005 C A CNTN3 Missense_Mutation p.V517F 0.35 deleterious(0.02) benign(0.023) TCGA-44-6778-01 3 96963122 96963122 G T EPHA6 Missense_Mutation p.D533Y 0.23 deleterious(0) possibly_damaging(0.595) TCGA-44-6778-01 3 97983303 97983303 C A OR5H6 Missense_Mutation p.L59I 0.26 deleterious(0.05) benign(0.125) TCGA-44-6778-01 3 98216577 98216577 C A OR5K2 Missense_Mutation p.T18K 0.23 deleterious(0.02) benign(0.027) TCGA-44-6778-01 3 98307565 98307565 A C CPOX Missense_Mutation p.F315L 0.20 deleterious(0) possibly_damaging(0.809) TCGA-44-6778-01 4 10117832 10117832 C G WDR1 Missense_Mutation p.V15L 0.32 deleterious(0.03) benign(0.072) TCGA-44-6778-01 4 104577453 104577453 G A TACR3 Silent p.I262I 0.29 TCGA-44-6778-01 4 106157611 106157611 A G TET2 Missense_Mutation p.T838A 0.26 tolerated(0.31) benign(0.001) TCGA-44-6778-01 4 114278125 114278125 G T ANK2 Missense_Mutation p.S2784I 0.33 benign(0.272) TCGA-44-6778-01 4 120085547 120085547 C G MYOZ2 Missense_Mutation p.N186K 0.29 deleterious(0) probably_damaging(1) TCGA-44-6778-01 4 122682832 122682832 C A TMEM155 Nonsense_Mutation p.E25* 0.19 TCGA-44-6778-01 4 155489562 155489562 G T FGB Nonsense_Mutation p.E250* 0.27 TCGA-44-6778-01 4 159568063 159568063 G C RXFP1 Missense_Mutation p.G489A 0.20 deleterious(0.02) probably_damaging(1) TCGA-44-6778-01 4 2321975 2321975 C T ZFYVE28 Missense_Mutation p.G242E 0.15 deleterious(0) probably_damaging(1) TCGA-44-6778-01 4 6325019 6325019 C A PPP2R2C 3'UTR 0.35 TCGA-44-6778-01 4 69536220 69536220 C T UGT2B15 Missense_Mutation p.M39I 0.21 tolerated(0.75) benign(0.013) TCGA-44-6778-01 4 70080232 70080232 G T UGT2B11 Missense_Mutation p.S70Y 0.13 deleterious(0) possibly_damaging(0.883) TCGA-44-6778-01 4 70596264 70596264 G T SULT1B1 Missense_Mutation p.P245T 0.23 deleterious(0.01) probably_damaging(0.924) TCGA-44-6778-01 4 71346811 71346811 C A MUC7 Missense_Mutation p.P117Q 0.16 tolerated(0.09) possibly_damaging(0.551) TCGA-44-6778-01 4 73013164 73013164 G T NPFFR2 Missense_Mutation p.A402S 0.22 tolerated(0.1) possibly_damaging(0.545) TCGA-44-6778-01 4 73956470 73956470 G A ANKRD17 Missense_Mutation p.P2292L 0.23 benign(0.06) TCGA-44-6778-01 4 86916250 86916250 G T ARHGAP24 Silent p.T481T 0.23 TCGA-44-6778-01 5 118835179 118835179 C T HSD17B4 Silent p.I405I 0.30 TCGA-44-6778-01 5 127866324 127866324 T A FBN2 Missense_Mutation p.S134C 0.27 deleterious(0.01) benign(0.001) TCGA-44-6778-01 5 127873059 127873059 G C FBN2 Missense_Mutation p.Q80E 0.34 tolerated(0.51) unknown(0) TCGA-44-6778-01 5 140474750 140474750 A T PCDHB2 Missense_Mutation p.R126W 0.24 deleterious_low_confidence(0.01) benign(0.031) TCGA-44-6778-01 5 140736646 140736646 C G PCDHGA4 Missense_Mutation p.R627G 0.38 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-44-6778-01 5 147862721 147862721 C G HTR4 3'UTR 0.38 TCGA-44-6778-01 5 156565909 156565909 T C MED7 Silent p.S178S 0.20 TCGA-44-6778-01 5 16067755 16067755 C G MARCH11 Missense_Mutation p.W345S 0.10 tolerated(0.26) benign(0.024) TCGA-44-6778-01 5 169435718 169435718 G C DOCK2 Missense_Mutation p.G1067A 0.21 tolerated(0.08) possibly_damaging(0.817) TCGA-44-6778-01 5 178417662 178417662 G T GRM6 Missense_Mutation p.P315T 0.17 tolerated(0.22) probably_damaging(0.978) TCGA-44-6778-01 5 178506349 178506349 G C ZNF354C Missense_Mutation p.G306R 0.33 deleterious(0.02) probably_damaging(1) TCGA-44-6778-01 5 19612583 19612583 G C CDH18 Silent p.T257T 0.14 TCGA-44-6778-01 5 21752327 21752327 A T CDH12 Missense_Mutation p.V635E 0.19 deleterious(0) benign(0.276) TCGA-44-6778-01 5 24487952 24487952 G - CDH10 Frame_Shift_Del p.Y730Tfs*19 0.12 TCGA-44-6778-01 5 26915772 26915772 T C CDH9 Silent p.L163L 0.21 TCGA-44-6778-01 5 40692466 40692467 - A PTGER4 Frame_Shift_Ins p.C487Mfs*50 0.16 TCGA-44-6778-01 5 41381998 41381998 C A PLCXD3 Missense_Mutation p.V248L 0.21 deleterious(0.01) possibly_damaging(0.596) TCGA-44-6778-01 5 43280356 43280356 T C NIM1K Missense_Mutation p.L279P 0.05 deleterious(0) probably_damaging(1) TCGA-44-6778-01 5 488523 488523 C T SLC9A3 Missense_Mutation p.A195T 0.26 deleterious(0) possibly_damaging(0.902) TCGA-44-6778-01 5 64883126 64883126 G C PPWD1 Missense_Mutation p.G615A 0.26 deleterious(0) benign(0.2) TCGA-44-6778-01 5 9197321 9197321 A T SEMA5A Missense_Mutation p.S343T 0.11 tolerated(0.14) probably_damaging(0.998) TCGA-44-6778-01 5 96503332 96503332 A G RIOK2 Silent p.S412S 0.24 TCGA-44-6778-01 6 101847268 101847268 G T GRIK2 Missense_Mutation p.G39C 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-44-6778-01 6 105405135 105405135 G A LIN28B Missense_Mutation p.G4S 0.11 tolerated_low_confidence(0.06) unknown(0) TCGA-44-6778-01 6 111694418 111694418 A G REV3L Missense_Mutation p.S1714P 0.16 tolerated_low_confidence(0.44) benign(0) TCGA-44-6778-01 6 112382465 112382466 - T WISP3 Frame_Shift_Ins p.R126* 0.11 TCGA-44-6778-01 6 128294963 128294963 C T PTPRK Missense_Mutation p.G1333S 0.09 deleterious(0) probably_damaging(0.997) TCGA-44-6778-01 6 129714272 129714272 C A LAMA2 Silent p.R1773R 0.15 TCGA-44-6778-01 6 129714294 129714294 A G LAMA2 Missense_Mutation p.K1780R 0.14 tolerated(0.38) benign(0.219) TCGA-44-6778-01 6 130761691 130761691 C A TMEM200A Missense_Mutation p.R42S 0.07 deleterious(0) probably_damaging(0.925) TCGA-44-6778-01 6 136599263 136599263 G T BCLAF1 Missense_Mutation p.H252Q 0.08 tolerated(0.22) benign(0.19) TCGA-44-6778-01 6 152443811 152443811 C T SYNE1 Silent p.R8718R 0.12 TCGA-44-6778-01 6 155485654 155485654 C A TIAM2 Missense_Mutation p.L712I 0.11 deleterious(0) probably_damaging(0.989) TCGA-44-6778-01 6 25861852 25861852 C A SLC17A3 Nonsense_Mutation p.G209* 0.09 TCGA-44-6778-01 6 26373142 26373142 G T BTN3A2 Missense_Mutation p.A245S 0.49 tolerated(0.74) possibly_damaging(0.495) TCGA-44-6778-01 6 27418997 27418997 T A ZNF184 3'UTR 0.29 TCGA-44-6778-01 6 29142241 29142241 C A OR2J2 Missense_Mutation p.L277I 0.29 deleterious(0.01) possibly_damaging(0.657) TCGA-44-6778-01 6 29365229 29365229 T C OR12D2 Silent p.Y251Y 0.12 TCGA-44-6778-01 6 29640680 29640680 T A ZFP57 Missense_Mutation p.Q403L 0.30 tolerated(0.16) benign(0.059) TCGA-44-6778-01 6 30164347 30164347 C A TRIM26 Silent p.L237L 0.05 TCGA-44-6778-01 6 31911043 31911043 A C CFB Missense_Mutation p.M315L 0.17 tolerated(0.54) benign(0.434) TCGA-44-6778-01 6 39073161 39073161 G A SAYSD1 3'UTR 0.13 TCGA-44-6778-01 6 40400624 40400624 C A LRFN2 Missense_Mutation p.G77W 0.25 deleterious(0) probably_damaging(0.977) TCGA-44-6778-01 6 40400625 40400625 C A LRFN2 Silent p.T76T 0.25 TCGA-44-6778-01 6 42185578 42185578 G A MRPS10 Missense_Mutation p.R4W 0.26 tolerated_low_confidence(0.06) benign(0.016) TCGA-44-6778-01 6 47976771 47976771 G C PTCHD4 Nonsense_Mutation p.S169* 0.09 TCGA-44-6778-01 6 49754263 49754263 C A PGK2 Missense_Mutation p.G213V 0.08 deleterious(0) probably_damaging(1) TCGA-44-6778-01 6 51619626 51619626 C T PKHD1 Missense_Mutation p.G2918D 0.15 tolerated(0.15) benign(0.163) TCGA-44-6778-01 6 53519011 53519011 T G KLHL31 Missense_Mutation p.K354Q 0.06 tolerated(0.05) probably_damaging(0.999) TCGA-44-6778-01 6 53519990 53519991 - A KLHL31 Frame_Shift_Ins p.N28Kfs*17 0.09 TCGA-44-6778-01 6 56481510 56481510 C A DST Intron 0.14 TCGA-44-6778-01 6 74072850 74072850 G T KHDC3L Missense_Mutation p.G68C 0.18 tolerated(1) benign(0.002) TCGA-44-6778-01 6 76660393 76660393 G T IMPG1 Silent p.G570G 0.20 TCGA-44-6778-01 6 84930830 84930830 C T KIAA1009 Missense_Mutation p.M39I 0.14 tolerated(0.17) benign(0.029) TCGA-44-6778-01 7 100552896 100552896 G T MUC3A Missense_Mutation p.G514V 0.07 deleterious(0) probably_damaging(0.993) TCGA-44-6778-01 7 100682138 100682138 G T MUC17 Missense_Mutation p.V2481F 0.20 probably_damaging(0.993) TCGA-44-6778-01 7 103143606 103143606 G C RELN Missense_Mutation p.F2782L 0.19 tolerated(0.28) probably_damaging(0.935) TCGA-44-6778-01 7 104782778 104782778 T A SRPK2 Missense_Mutation p.Q407L 0.21 tolerated(0.06) benign(0.08) TCGA-44-6778-01 7 107314662 107314662 C T SLC26A4 Missense_Mutation p.P157S 0.17 tolerated(0.07) probably_damaging(1) TCGA-44-6778-01 7 107642144 107642144 G T LAMB1 Silent p.P24P 0.18 TCGA-44-6778-01 7 107824974 107824974 G T NRCAM Missense_Mutation p.A707D 0.27 deleterious(0) probably_damaging(0.954) TCGA-44-6778-01 7 116918433 116918433 G T WNT2 Missense_Mutation p.L287M 0.22 deleterious(0.04) benign(0.051) TCGA-44-6778-01 7 129986302 129986302 C T CPA5 5'UTR 0.19 TCGA-44-6778-01 7 137801497 137801497 A T AKR1D1 3'UTR 0.33 TCGA-44-6778-01 7 141429403 141429403 G A WEE2 Silent p.G536G 0.27 TCGA-44-6778-01 7 142176338 142176338 C A TRBV7-4 Missense_Mutation p.S113I 0.18 deleterious(0) probably_damaging(0.993) TCGA-44-6778-01 7 142223903 142223903 C G TRBV11-1 Missense_Mutation p.R88S 0.10 tolerated(0.06) probably_damaging(0.944) TCGA-44-6778-01 7 142562205 142562205 C T EPHB6 Missense_Mutation p.T216M 0.21 deleterious(0.04) probably_damaging(0.982) TCGA-44-6778-01 7 143792515 143792515 G A OR2A12 Silent p.A105A 0.21 TCGA-44-6778-01 7 148112699 148112699 G T CNTNAP2 Missense_Mutation p.W1329C 0.23 deleterious(0) probably_damaging(0.94) TCGA-44-6778-01 7 149485870 149485870 G T SSPO RNA 0.32 TCGA-44-6778-01 7 150324721 150324721 C A GIMAP6 3'UTR 0.30 TCGA-44-6778-01 7 1520047 1520047 C A INTS1 Missense_Mutation p.S1327I 0.14 deleterious(0.02) benign(0.288) TCGA-44-6778-01 7 154585871 154585871 A G DPP6 Missense_Mutation p.I407V 0.16 tolerated(0.32) benign(0.052) TCGA-44-6778-01 7 20449351 20449351 A T ITGB8 Missense_Mutation p.S713C 0.26 tolerated(0.05) benign(0.371) TCGA-44-6778-01 7 21840846 21840846 A G DNAH11 Missense_Mutation p.N3380S 0.09 benign(0.019) TCGA-44-6778-01 7 43483856 43483856 C A HECW1 Missense_Mutation p.A362D 0.19 tolerated_low_confidence(0.07) benign(0.082) TCGA-44-6778-01 7 44150526 44150526 C G AEBP1 Missense_Mutation p.N500K 0.09 deleterious(0) probably_damaging(1) TCGA-44-6778-01 7 45141438 45141438 T C TBRG4 Missense_Mutation p.Y518C 0.08 deleterious(0) probably_damaging(1) TCGA-44-6778-01 7 64378058 64378074 GATAACTACAGAAACCT - ZNF273 Frame_Shift_Del p.D68Gfs*9 0.14 TCGA-44-6778-01 7 71177028 71177028 C A WBSCR17 Missense_Mutation p.T565K 0.13 deleterious(0) probably_damaging(0.997) TCGA-44-6778-01 7 72657499 72657499 C G GTF2IRD2P1 RNA 0.18 TCGA-44-6778-01 7 72683037 72683037 G T GTF2IRD2P1 RNA 0.31 TCGA-44-6778-01 7 72683038 72683038 G T GTF2IRD2P1 RNA 0.33 TCGA-44-6778-01 7 73588723 73588723 T G EIF4H Missense_Mutation p.F4V 0.17 deleterious_low_confidence(0.01) benign(0.214) TCGA-44-6778-01 7 82764221 82764221 C A PCLO Missense_Mutation p.R882L 0.33 unknown(0) TCGA-44-6778-01 7 86468553 86468553 G A GRM3 Missense_Mutation p.A575T 0.14 tolerated(0.1) possibly_damaging(0.887) TCGA-44-6778-01 7 91980363 91980363 A C ANKIB1 Silent p.V395V 0.22 TCGA-44-6778-01 7 92764824 92764824 C - SAMD9L Frame_Shift_Del p.G154Vfs*3 0.16 TCGA-44-6778-01 7 94540564 94540564 G A PPP1R9A Missense_Mutation p.G380E 0.11 tolerated(0.6) benign(0.072) TCGA-44-6778-01 7 94540577 94540577 T A PPP1R9A Silent p.P384P 0.09 TCGA-44-6778-01 7 95045525 95045525 T C PON2 Intron 0.28 TCGA-44-6778-01 8 10383193 10383193 G A PRSS55 Missense_Mutation p.G33D 0.29 tolerated(0.09) benign(0.117) TCGA-44-6778-01 8 10467247 10467247 G T RP1L1 Missense_Mutation p.P1454H 0.18 unknown(0) TCGA-44-6778-01 8 105105698 105105698 G T RIMS2 Intron 0.31 TCGA-44-6778-01 8 106815427 106815427 A T ZFPM2 Silent p.R1039R 0.33 TCGA-44-6778-01 8 110413726 110413726 G C PKHD1L1 Missense_Mutation p.V428L 0.16 deleterious(0.01) benign(0.442) TCGA-44-6778-01 8 113326812 113326813 AG - CSMD3 Frame_Shift_Del p.S2465Yfs*11 0.20 TCGA-44-6778-01 8 114111138 114111138 G T CSMD3 Missense_Mutation p.P255H 0.29 deleterious(0.01) probably_damaging(0.93) TCGA-44-6778-01 8 119123235 119123235 G A EXT1 Silent p.L17L 0.17 TCGA-44-6778-01 8 12586807 12586807 T C LONRF1 Missense_Mutation p.M575V 0.22 deleterious(0) benign(0.31) TCGA-44-6778-01 8 13357525 13357525 C A DLC1 Missense_Mutation p.G19V 0.14 deleterious_low_confidence(0) benign(0.424) TCGA-44-6778-01 8 139165277 139165277 C A FAM135B Nonsense_Mutation p.E481* 0.25 TCGA-44-6778-01 8 144124596 144124596 G A C8orf31 Missense_Mutation p.A35T 0.14 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-44-6778-01 8 19805737 19805737 C A LPL Silent p.T45T 0.15 TCGA-44-6778-01 8 27320796 27320796 C A CHRNA2 Missense_Mutation p.E388D 0.16 tolerated(0.37) possibly_damaging(0.469) TCGA-44-6778-01 8 27462494 27462494 T A CLU Missense_Mutation p.D259V 0.29 deleterious(0.01) possibly_damaging(0.841) TCGA-44-6778-01 8 37691586 37691586 G T GPR124 Silent p.V516V 0.19 TCGA-44-6778-01 8 39442795 39442795 G T ADAM18 Missense_Mutation p.G19V 0.21 deleterious(0.01) possibly_damaging(0.697) TCGA-44-6778-01 8 41122771 41122771 C T SFRP1 Nonsense_Mutation p.W287* 0.21 TCGA-44-6778-01 8 41571699 41571699 C G ANK1 Missense_Mutation p.G625A 0.16 deleterious(0) probably_damaging(0.999) TCGA-44-6778-01 8 42038129 42038129 G A PLAT Missense_Mutation p.H322Y 0.12 deleterious(0) probably_damaging(0.965) TCGA-44-6778-01 8 53852566 53852566 G A NPBWR1 Silent p.P33P 0.17 TCGA-44-6778-01 8 57025763 57025763 G T MOS Missense_Mutation p.A260D 0.13 deleterious(0) probably_damaging(1) TCGA-44-6778-01 8 57358364 57358364 G A PENK Intron 0.10 TCGA-44-6778-01 8 61707560 61707560 C T CHD7 Silent p.D704D 0.17 TCGA-44-6778-01 8 67786809 67786809 G T MCMDC2 Missense_Mutation p.Q91H 0.12 tolerated(0.35) benign(0.022) TCGA-44-6778-01 8 68658312 68658312 C A CPA6 Missense_Mutation p.C18F 0.12 tolerated(0.27) benign(0) TCGA-44-6778-01 8 75927086 75927086 G T CRISPLD1 Silent p.R222R 0.14 TCGA-44-6778-01 8 92998379 92998379 G T RUNX1T1 Missense_Mutation p.P429T 0.16 tolerated(0.12) benign(0.002) TCGA-44-6778-01 9 101824294 101824294 G T COL15A1 Silent p.A1148A 0.21 TCGA-44-6778-01 9 123731377 123731377 G A C5 Silent p.Y1394Y 0.21 TCGA-44-6778-01 9 124329406 124329406 G T DAB2IP 5'UTR 0.22 TCGA-44-6778-01 9 125377740 125377740 G T OR1Q1 Missense_Mutation p.G242C 0.20 deleterious(0) probably_damaging(0.973) TCGA-44-6778-01 9 125797553 125797553 T A GPR21 Missense_Mutation p.S236R 0.27 tolerated(0.37) benign(0.005) TCGA-44-6778-01 9 130536632 130536632 T A SH2D3C Missense_Mutation p.E51V 0.25 deleterious(0.02) possibly_damaging(0.569) TCGA-44-6778-01 9 132586260 132586260 G A TOR1A Silent p.T35T 0.24 TCGA-44-6778-01 9 134077033 134077033 G T NUP214 Splice_Site p.X1841_splice 0.19 TCGA-44-6778-01 9 135173664 135173664 G C SETX Missense_Mutation p.Q1862E 0.19 deleterious(0) probably_damaging(0.97) TCGA-44-6778-01 9 135374960 135374960 C T C9orf171 Missense_Mutation p.P202L 0.27 deleterious(0) possibly_damaging(0.603) TCGA-44-6778-01 9 140354833 140354833 T C PNPLA7 3'UTR 0.25 TCGA-44-6778-01 9 14307010 14307011 - A NFIB Frame_Shift_Ins p.L180Ffs*20 0.25 TCGA-44-6778-01 9 19063030 19063030 T C HAUS6 Silent p.K535K 0.29 TCGA-44-6778-01 9 21216931 21216931 T A IFNA16 Missense_Mutation p.Q125L 0.23 deleterious(0.02) possibly_damaging(0.519) TCGA-44-6778-01 9 43627175 43627175 T A SPATA31A6 Silent p.P504P 0.20 TCGA-44-6778-01 9 6328912 6328912 G T TPD52L3 Missense_Mutation p.C106F 0.31 deleterious(0.01) possibly_damaging(0.832) TCGA-44-6778-01 9 69420354 69420354 T A ANKRD20A4 Nonsense_Mutation p.L415* 0.05 TCGA-44-6778-01 9 79635401 79635401 C A FOXB2 Silent p.G277G 0.18 TCGA-44-6778-01 9 79980489 79980489 G A VPS13A Silent p.K2775K 0.20 TCGA-44-6778-01 9 86284187 86284187 G A UBQLN1 Silent p.N387N 0.15 TCGA-44-6778-01 9 90388095 90388095 C A CTSL3P RNA 0.19 TCGA-44-6778-01 X 110574146 110574146 C A DCX Splice_Site p.X392_splice 0.37 TCGA-44-6778-01 X 135301625 135301625 G A MAP7D3 Silent p.D865D 0.11 TCGA-44-6778-01 X 151899634 151899634 G A MAGEA12 3'UTR 0.77 TCGA-44-6778-01 X 153689939 153689939 G T PLXNA3 Silent p.L365L 0.75 TCGA-44-6778-01 X 154158604 154158604 T C F8 Missense_Mutation p.E1154G 0.62 tolerated(0.21) benign(0.008) TCGA-44-6778-01 X 1584526 1584526 C G P2RY8 Missense_Mutation p.G309A 0.15 tolerated(0.38) benign(0.017) TCGA-44-6778-01 X 50350571 50350571 G A SHROOM4 Silent p.L1191L 0.45 TCGA-44-6778-01 X 54359977 54359977 T C WNK3 Missense_Mutation p.S44G 0.38 tolerated(0.23) benign(0.002) TCGA-44-6778-01 X 65242611 65242611 C G VSIG4 Intron 0.21 TCGA-44-6778-01 X 88009303 88009303 C G CPXCR1 Missense_Mutation p.C296W 0.24 deleterious(0.03) benign(0) TCGA-44-6778-01 Y 4967791 4967791 C A PCDH11Y Silent p.G724G 0.23 TCGA-44-6778-01 Y 4968236 4968236 C A PCDH11Y Missense_Mutation p.H873N 0.23 tolerated(0.43) benign(0.133) TCGA-44-6779-01 10 103906777 103906777 C T PPRC1 Missense_Mutation p.P1343L 0.24 tolerated(1) benign(0) TCGA-44-6779-01 10 24820812 24820812 C A KIAA1217 Missense_Mutation p.P1046T 0.42 deleterious(0) probably_damaging(0.999) TCGA-44-6779-01 10 71716763 71716763 G A COL13A1 Missense_Mutation p.E706K 0.31 deleterious(0) benign(0.321) TCGA-44-6779-01 10 75434611 75434611 C A AGAP5 Missense_Mutation p.A603S 0.21 deleterious(0.01) benign(0.038) TCGA-44-6779-01 10 93038129 93038129 A T PCGF5 3'UTR 0.36 TCGA-44-6779-01 11 100962496 100962496 A C PGR Missense_Mutation p.L634R 0.32 deleterious(0) probably_damaging(1) TCGA-44-6779-01 11 118081271 118081271 G A AMICA1 Missense_Mutation p.R119C 0.24 deleterious(0) probably_damaging(0.999) TCGA-44-6779-01 11 120856933 120856933 G A GRIK4 Silent p.E945E 0.13 TCGA-44-6779-01 11 124756661 124756661 G A ROBO4 Silent p.I831I 0.38 TCGA-44-6779-01 11 19184974 19184974 G - ZDHHC13 Frame_Shift_Del 0.23 TCGA-44-6779-01 11 2189322 2189322 G T TH Missense_Mutation p.P223Q 0.16 deleterious(0) probably_damaging(0.993) TCGA-44-6779-01 11 44135768 44135768 G T EXT2 Missense_Mutation p.W253C 0.27 deleterious(0.03) probably_damaging(0.993) TCGA-44-6779-01 11 59863194 59863194 G A MS4A2 3'UTR 0.35 TCGA-44-6779-01 11 6789746 6789746 G C OR2AG2 Missense_Mutation p.S148C 0.17 tolerated(0.15) benign(0.045) TCGA-44-6779-01 12 113710467 113710467 C T TPCN1 Silent p.F323F 0.33 TCGA-44-6779-01 12 113715134 113715134 C T TPCN1 Silent p.F455F 0.41 TCGA-44-6779-01 12 113715147 113715147 C T TPCN1 Nonsense_Mutation p.Q460* 0.43 TCGA-44-6779-01 12 113717996 113717996 C T TPCN1 Silent p.F518F 0.20 TCGA-44-6779-01 12 11420396 11420396 G T PRB3 Missense_Mutation p.R221S 0.26 tolerated(0.15) unknown(0) TCGA-44-6779-01 12 4920464 4920464 A T KCNA6 Silent p.T419T 0.20 TCGA-44-6779-01 12 51065071 51065071 G A DIP2B Missense_Mutation p.R177H 0.12 deleterious(0.02) benign(0.033) TCGA-44-6779-01 12 56031203 56031203 G T OR10P1 Silent p.P176P 0.16 TCGA-44-6779-01 12 81101444 81101444 G T MYF6 5'UTR 0.51 TCGA-44-6779-01 13 88328297 88328297 G - SLITRK5 Frame_Shift_Del p.L220Sfs*24 0.28 TCGA-44-6779-01 13 88328860 88328860 C T SLITRK5 Missense_Mutation p.P406L 0.28 deleterious(0) probably_damaging(0.999) TCGA-44-6779-01 14 105609331 105609331 G A JAG2 Missense_Mutation p.R1140W 0.38 deleterious(0) probably_damaging(0.996) TCGA-44-6779-01 14 51352570 51352570 G C ABHD12B Missense_Mutation p.G207R 0.27 tolerated(0.15) probably_damaging(0.957) TCGA-44-6779-01 14 52507564 52507564 C A NID2 Missense_Mutation p.A611S 0.19 tolerated(0.48) benign(0.014) TCGA-44-6779-01 14 88693778 88693778 C G KCNK10 Missense_Mutation p.G208R 0.26 deleterious(0) probably_damaging(1) TCGA-44-6779-01 14 96954783 96954783 C G AK7 3'UTR 0.41 TCGA-44-6779-01 15 25485066 25485066 C T SNORD115-38 RNA 0.11 TCGA-44-6779-01 15 32915726 32915726 C G ARHGAP11A Missense_Mutation p.D78E 0.15 tolerated(1) benign(0.001) TCGA-44-6779-01 15 43892287 43892287 G A STRC Nonsense_Mutation p.Q1704* 0.33 TCGA-44-6779-01 15 50534448 50534448 G A HDC 3'UTR 0.15 TCGA-44-6779-01 15 54793103 54793103 G A UNC13C Missense_Mutation p.S1743N 0.11 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-44-6779-01 15 60297987 60297987 G T FOXB1 Silent p.A275A 0.31 TCGA-44-6779-01 15 73766253 73766253 G A C15orf60 Silent p.Q80Q 0.48 TCGA-44-6779-01 15 75985532 75985532 G A CSPG4 Missense_Mutation p.T44M 0.29 tolerated(0.12) benign(0.004) TCGA-44-6779-01 16 11931885 11931885 G A RSL1D1 Missense_Mutation p.P411L 0.03 tolerated(1) benign(0.026) TCGA-44-6779-01 16 58312467 58312467 G A CCDC113 Missense_Mutation p.V325I 0.41 tolerated(0.06) benign(0.127) TCGA-44-6779-01 16 84486767 84486767 G A ATP2C2 Missense_Mutation p.G619R 0.19 tolerated(0.23) benign(0.048) TCGA-44-6779-01 16 8993490 8993490 T A USP7 Missense_Mutation p.T812S 0.32 tolerated(0.57) benign(0.003) TCGA-44-6779-01 17 32646553 32646553 G T CCL8 Silent p.L11L 0.20 TCGA-44-6779-01 17 5317415 5317415 G A NUP88 Silent p.T169T 0.56 TCGA-44-6779-01 17 73045381 73045381 C T KCTD2 Missense_Mutation p.R136C 0.08 deleterious(0) probably_damaging(0.997) TCGA-44-6779-01 17 7578536 7578536 T C TP53 Missense_Mutation p.K132E 0.39 deleterious(0) probably_damaging(1) TCGA-44-6779-01 17 79580446 79580446 G A NPLOC4 Missense_Mutation p.P95L 0.55 tolerated(0.81) benign(0) TCGA-44-6779-01 18 22804461 22804461 A T ZNF521 Missense_Mutation p.S1141T 0.36 tolerated(0.34) benign(0.007) TCGA-44-6779-01 18 22804462 22804462 G A ZNF521 Silent p.C1140C 0.36 TCGA-44-6779-01 18 52901847 52901847 G T TCF4 Missense_Mutation p.P575Q 0.24 deleterious(0.03) possibly_damaging(0.588) TCGA-44-6779-01 19 10610285 10610285 G A KEAP1 Missense_Mutation p.T142M 0.42 deleterious(0) probably_damaging(1) TCGA-44-6779-01 19 1220685 1220685 A T STK11 Nonsense_Mutation p.K235* 0.41 TCGA-44-6779-01 19 24310436 24310436 C G ZNF254 Missense_Mutation p.P545R 0.32 deleterious(0.02) benign(0.087) TCGA-44-6779-01 19 31769002 31769002 G T TSHZ3 Nonsense_Mutation p.S566* 0.40 TCGA-44-6779-01 19 34712504 34712504 G A LSM14A Missense_Mutation p.R410K 0.28 tolerated(0.08) probably_damaging(0.994) TCGA-44-6779-01 19 49843570 49843570 C A CD37 Silent p.L277L 0.47 TCGA-44-6779-01 19 51483661 51483661 G C KLK7 Missense_Mutation p.P102A 0.42 deleterious(0) probably_damaging(0.995) TCGA-44-6779-01 1 100676288 100676288 C A DBT Missense_Mutation p.A327S 0.20 tolerated(0.73) benign(0.024) TCGA-44-6779-01 1 109707159 109707159 G T KIAA1324 Missense_Mutation p.D105Y 0.24 deleterious(0.01) possibly_damaging(0.57) TCGA-44-6779-01 1 14142945 14142945 G A PRDM2 Missense_Mutation p.R1687Q 0.34 unknown(0) TCGA-44-6779-01 1 190068054 190068054 G T BRINP3 Silent p.T465T 0.32 TCGA-44-6779-01 1 19448475 19448475 G A UBR4 Missense_Mutation p.A3283V 0.08 probably_damaging(0.943) TCGA-44-6779-01 1 205760707 205760707 T A SLC41A1 Missense_Mutation p.H499L 0.07 tolerated(0.25) probably_damaging(0.995) TCGA-44-6779-01 1 215342563 215342563 G T KCNK2 Missense_Mutation p.R166L 0.27 tolerated(0.14) benign(0.028) TCGA-44-6779-01 1 220345342 220345342 C A RAB3GAP2 Missense_Mutation p.Q822H 0.33 deleterious(0.01) probably_damaging(0.994) TCGA-44-6779-01 1 236343183 236343183 C T GPR137B Missense_Mutation p.S231F 0.28 deleterious(0.03) possibly_damaging(0.602) TCGA-44-6779-01 1 62349930 62349930 A G INADL Missense_Mutation p.Q994R 0.29 tolerated(0.2) benign(0.007) TCGA-44-6779-01 20 41306792 41306792 G - PTPRT Frame_Shift_Del p.T290Rfs*33 0.09 TCGA-44-6779-01 20 49366455 49366455 A G PARD6B Silent p.P183P 0.34 TCGA-44-6779-01 20 61541330 61541330 G A DIDO1 Silent p.G294G 0.40 TCGA-44-6779-01 22 20760447 20760447 T C ZNF74 Missense_Mutation p.L375P 0.05 deleterious(0) probably_damaging(1) TCGA-44-6779-01 22 23154716 23154716 G T IGLV3-10 Silent p.G95G 0.24 TCGA-44-6779-01 22 28194109 28194109 C G MN1 Missense_Mutation p.G808A 0.36 probably_damaging(0.998) TCGA-44-6779-01 2 108488692 108488692 T C RGPD4 Missense_Mutation p.I1411T 0.32 deleterious(0.03) probably_damaging(0.973) TCGA-44-6779-01 2 141709451 141709451 G T LRP1B Missense_Mutation p.S982R 0.43 possibly_damaging(0.899) TCGA-44-6779-01 2 152663470 152663470 C G ARL5A Missense_Mutation p.G119A 0.11 tolerated(0.88) probably_damaging(0.999) TCGA-44-6779-01 2 163208879 163208879 G C GCA Missense_Mutation p.R75T 0.22 tolerated(0.07) benign(0.052) TCGA-44-6779-01 2 164466086 164466086 G T FIGN Missense_Mutation p.N752K 0.11 deleterious(0.01) probably_damaging(1) TCGA-44-6779-01 2 166900385 166900385 G A SCN1A Nonsense_Mutation p.R613* 0.15 TCGA-44-6779-01 2 168726189 168726189 C A B3GALT1 Silent p.R214R 0.10 TCGA-44-6779-01 2 179358664 179358664 C T PLEKHA3 Missense_Mutation p.T133I 0.10 deleterious(0.02) probably_damaging(0.972) TCGA-44-6779-01 2 179432140 179432140 C A TTN Missense_Mutation p.C26240F 0.27 TCGA-44-6779-01 2 179614601 179614601 T A TTN Intron 0.32 TCGA-44-6779-01 2 201468820 201468820 G T AOX1 Missense_Mutation p.M223I 0.35 tolerated(0.53) benign(0.005) TCGA-44-6779-01 2 207564875 207564875 G T DYTN Missense_Mutation p.F183L 0.33 deleterious(0) probably_damaging(0.999) TCGA-44-6779-01 2 207583007 207583007 A T DYTN 5'UTR 0.38 TCGA-44-6779-01 2 238729761 238729761 T C RBM44 Missense_Mutation p.L655P 0.35 deleterious(0) probably_damaging(0.997) TCGA-44-6779-01 2 47606164 47606164 G A EPCAM Missense_Mutation p.A210T 0.21 deleterious(0.04) benign(0.4) TCGA-44-6779-01 2 48848037 48848037 G T STON1-GTF2A1L Silent p.R727R 0.22 TCGA-44-6779-01 2 61721151 61721151 G T XPO1 Missense_Mutation p.H375N 0.05 tolerated(0.32) benign(0) TCGA-44-6779-01 2 88485519 88485519 G T THNSL2 Silent p.L444L 0.19 TCGA-44-6779-01 3 16646788 16646788 G A DAZL 5'Flank 0.45 TCGA-44-6779-01 3 193272693 193272693 T A ATP13A4 5'UTR 0.27 TCGA-44-6779-01 4 13604663 13604663 C T BOD1L1 Silent p.V1287V 0.31 TCGA-44-6779-01 4 52861066 52861066 C A LRRC66 Missense_Mutation p.G708W 0.32 deleterious(0) probably_damaging(1) TCGA-44-6779-01 4 52861067 52861067 C A LRRC66 Missense_Mutation p.E707D 0.31 deleterious(0) probably_damaging(0.999) TCGA-44-6779-01 4 65175604 65175604 C A TECRL Missense_Mutation p.L199F 0.25 tolerated(0.07) probably_damaging(0.991) TCGA-44-6779-01 4 66201731 66201731 T G EPHA5 Missense_Mutation p.K924T 0.15 tolerated(0.07) probably_damaging(0.993) TCGA-44-6779-01 5 122281813 122281813 G A SNX24 Missense_Mutation p.V70I 0.15 deleterious(0.04) possibly_damaging(0.754) TCGA-44-6779-01 5 140554370 140554370 C T PCDHB7 Missense_Mutation p.R652C 0.16 deleterious_low_confidence(0.01) benign(0.153) TCGA-44-6779-01 5 140616088 140616088 C A PCDHB18 RNA 0.08 TCGA-44-6779-01 6 109802316 109802316 T C ZBTB24 Missense_Mutation p.Y305C 0.30 tolerated(0.13) benign(0.014) TCGA-44-6779-01 6 110714107 110714107 A T DDO Silent p.P327P 0.43 TCGA-44-6779-01 6 26199202 26199202 G A HIST1H2AD Silent p.N90N 0.16 TCGA-44-6779-01 6 69640468 69640468 G T BAI3 Missense_Mutation p.D259Y 0.27 deleterious(0.02) benign(0.169) TCGA-44-6779-01 6 70411385 70411385 C T LMBRD1 Missense_Mutation p.G345R 0.35 tolerated(0.05) benign(0.298) TCGA-44-6779-01 6 89888768 89888768 G T GABRR1 Missense_Mutation p.S387R 0.32 tolerated(0.3) benign(0) TCGA-44-6779-01 7 120385968 120385969 - A KCND2 Frame_Shift_Ins p.T537Nfs*16 0.08 TCGA-44-6779-01 7 152549330 152549330 G A ACTR3B Silent p.R357R 0.24 TCGA-44-6779-01 7 2289637 2289637 G A NUDT1 Missense_Mutation p.E123K 0.25 deleterious(0.03) probably_damaging(0.984) TCGA-44-6779-01 7 2473023 2473023 G A CHST12 Missense_Mutation p.R250H 0.14 deleterious(0) probably_damaging(0.998) TCGA-44-6779-01 7 26240191 26240191 C A HNRNPA2B1 Splice_Site p.X2_splice 0.12 TCGA-44-6779-01 7 47894610 47894610 C A PKD1L1 Missense_Mutation p.V1577L 0.21 tolerated(0.08) benign(0.017) TCGA-44-6779-01 7 5023360 5023360 A G RBAK-RBAKDN 5'UTR 0.19 TCGA-44-6779-01 7 53103855 53103855 C A POM121L12 Missense_Mutation p.P164H 0.37 deleterious(0.01) probably_damaging(0.979) TCGA-44-6779-01 8 10470626 10470626 G A RP1L1 Missense_Mutation p.R328C 0.36 possibly_damaging(0.715) TCGA-44-6779-01 8 113694836 113694836 C A CSMD3 Nonsense_Mutation p.G838* 0.27 TCGA-44-6779-01 9 131605043 131605043 C T CCBL1 Missense_Mutation p.V31M 0.48 deleterious(0) probably_damaging(0.992) TCGA-44-6779-01 X 100880216 100880217 GG T ARMCX3 Frame_Shift_Del p.G83* 0.14 TCGA-44-6779-01 X 101969872 101969872 G A GPRASP2 Silent p.G25G 0.30 TCGA-44-6779-01 X 103216789 103216789 C A TMSB15B 5'Flank 0.18 TCGA-44-6779-01 X 144904436 144904436 C T SLITRK2 Silent p.L165L 0.23 TCGA-44-6779-01 X 145109318 145109318 G A MIR891A RNA 0.27 TCGA-44-6779-01 X 147924509 147924509 C T AFF2 Missense_Mutation p.P398L 0.19 deleterious(0.04) benign(0.19) TCGA-44-6779-01 X 153696766 153696766 G A PLXNA3 Missense_Mutation p.G1362S 0.15 tolerated(0.47) probably_damaging(1) TCGA-44-6779-01 X 26211971 26211971 G T MAGEB6 Missense_Mutation p.R3L 0.18 deleterious(0) possibly_damaging(0.801) TCGA-44-6779-01 X 66863200 66863200 A T AR Silent p.G573G 0.27 TCGA-44-6779-01 X 70354597 70354597 G A MED12 Missense_Mutation p.V1588M 0.20 possibly_damaging(0.468) TCGA-44-6779-01 X 77155038 77155038 C T COX7B 5'UTR 0.15 TCGA-44-6779-01 X 77286941 77286941 G T ATP7A Missense_Mutation p.G1052V 0.31 deleterious(0) probably_damaging(1) TCGA-44-7659-01 10 118203905 118203905 G A PNLIPRP3 Silent p.Q112Q 0.19 TCGA-44-7659-01 10 123997538 123997538 A T TACC2 Missense_Mutation p.E2778D 0.26 probably_damaging(0.997) TCGA-44-7659-01 10 135126284 135126284 C T ZNF511 Intron 0.25 TCGA-44-7659-01 10 15263031 15263031 A T FAM171A1 Silent p.L261L 0.34 TCGA-44-7659-01 10 17156057 17156057 T C CUBN Silent p.Q284Q 0.19 TCGA-44-7659-01 10 70360780 70360780 A G TET1 Missense_Mutation p.K653E 0.23 deleterious(0) possibly_damaging(0.78) TCGA-44-7659-01 10 71026381 71026381 G T HKDC1 Missense_Mutation p.L874F 0.24 tolerated(0.27) benign(0.139) TCGA-44-7659-01 10 71026382 71026382 C T HKDC1 Nonsense_Mutation p.Q875* 0.24 TCGA-44-7659-01 11 117079744 117079744 T C PCSK7 Silent p.S520S 0.20 TCGA-44-7659-01 11 118339515 118339515 C T KMT2A Missense_Mutation p.S153L 0.28 probably_damaging(0.942) TCGA-44-7659-01 11 11964407 11964407 A T USP47 Missense_Mutation p.S879C 0.22 deleterious(0.03) probably_damaging(0.988) TCGA-44-7659-01 11 1269055 1269055 C T MUC5B Nonsense_Mutation p.Q3649* 0.15 TCGA-44-7659-01 11 30034020 30034020 C A KCNA4 Missense_Mutation p.G69V 0.29 tolerated_low_confidence(0.07) unknown(0) TCGA-44-7659-01 11 4869599 4869599 A G OR51S1 Silent p.H280H 0.27 TCGA-44-7659-01 11 4936874 4936874 C A OR51G2 Missense_Mutation p.G7V 0.29 tolerated(0.32) unknown(0) TCGA-44-7659-01 11 55735796 55735796 A G OR10AG1 Silent p.T48T 0.05 TCGA-44-7659-01 11 56143640 56143640 G T OR8U1 Missense_Mutation p.D181Y 0.21 tolerated(0.28) probably_damaging(1) TCGA-44-7659-01 11 56185334 56185334 G T OR5R1 Silent p.A125A 0.16 TCGA-44-7659-01 11 60642986 60642986 G C ZP1 Splice_Site p.X592_splice 0.26 TCGA-44-7659-01 11 61109956 61109956 C T DAK Missense_Mutation p.R227C 0.16 tolerated(0.13) benign(0.015) TCGA-44-7659-01 12 100806591 100806591 G A SLC17A8 Silent p.S410S 0.22 TCGA-44-7659-01 12 104077048 104077048 C A STAB2 Nonsense_Mutation p.C957* 0.31 TCGA-44-7659-01 12 109530431 109530431 C G ALKBH2 Missense_Mutation p.G54A 0.20 tolerated_low_confidence(0.24) benign(0.004) TCGA-44-7659-01 12 113357335 113357335 G A OAS1 Missense_Mutation p.G361E 0.17 tolerated(0.38) benign(0) TCGA-44-7659-01 12 4881631 4881631 A C GALNT8 Missense_Mutation p.R594S 0.26 deleterious(0) possibly_damaging(0.876) TCGA-44-7659-01 12 50264295 50264295 G C FAIM2 Missense_Mutation p.R315G 0.28 deleterious(0.01) benign(0.204) TCGA-44-7659-01 12 54645824 54645824 C T CBX5 Splice_Site p.X108_splice 0.16 TCGA-44-7659-01 12 56868875 56868875 T - GLS2 Frame_Shift_Del p.T317Qfs*24 0.21 TCGA-44-7659-01 12 70178569 70178569 G A RAB3IP Missense_Mutation p.E210K 0.20 deleterious(0.02) probably_damaging(1) TCGA-44-7659-01 13 33701594 33701594 A T STARD13 Missense_Mutation p.L613Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-44-7659-01 13 41768338 41768338 C T KBTBD7 Missense_Mutation p.G19E 0.05 tolerated_low_confidence(0.05) probably_damaging(0.952) TCGA-44-7659-01 13 74387411 74387411 G A KLF12 Silent p.P228P 0.33 TCGA-44-7659-01 14 100118894 100118894 G A HHIPL1 Missense_Mutation p.V197M 0.08 deleterious(0) probably_damaging(0.984) TCGA-44-7659-01 14 106452746 106452746 G T IGHV1-2 Missense_Mutation p.D92E 0.38 tolerated(0.06) possibly_damaging(0.84) TCGA-44-7659-01 14 20296223 20296223 A G OR4N2 Missense_Mutation p.M206V 0.18 tolerated(0.46) benign(0.004) TCGA-44-7659-01 14 20849819 20849819 C A TEP1 Missense_Mutation p.R1484L 0.35 tolerated(0.2) benign(0.158) TCGA-44-7659-01 14 23900847 23900847 G C MYH7 Missense_Mutation p.L227V 0.20 deleterious(0.01) probably_damaging(0.967) TCGA-44-7659-01 14 65560493 65560493 C A MAX Missense_Mutation p.R35L 0.36 deleterious(0) probably_damaging(0.999) TCGA-44-7659-01 14 69376758 69376758 C G ACTN1 Missense_Mutation p.E143D 0.49 tolerated(0.09) benign(0.001) TCGA-44-7659-01 15 100340069 100340069 C A DNM1P46 RNA 0.39 TCGA-44-7659-01 15 22369056 22369056 G T OR4M2 Missense_Mutation p.A161S 0.17 tolerated(0.35) possibly_damaging(0.567) TCGA-44-7659-01 15 37100595 37100595 A G C15orf41 Missense_Mutation p.I263V 0.22 tolerated(0.14) probably_damaging(0.994) TCGA-44-7659-01 15 40764364 40764364 C T CHST14 Missense_Mutation p.H318Y 0.25 tolerated(1) benign(0.242) TCGA-44-7659-01 15 43577088 43577088 C G TGM7 Missense_Mutation p.D310H 0.24 deleterious(0) probably_damaging(1) TCGA-44-7659-01 15 48718047 48718047 T C FBN1 Missense_Mutation p.K2407E 0.34 benign(0.009) TCGA-44-7659-01 16 18826847 18826847 T C SMG1 Missense_Mutation p.M3477V 0.29 tolerated(0.2) benign(0.01) TCGA-44-7659-01 16 22163834 22163834 C A VWA3A Missense_Mutation p.A1095E 0.28 tolerated(0.44) benign(0.007) TCGA-44-7659-01 16 28330438 28330438 G C SBK1 Missense_Mutation p.V117L 0.21 tolerated(0.25) benign(0.012) TCGA-44-7659-01 16 29821464 29821464 T C MAZ 3'UTR 0.28 TCGA-44-7659-01 16 29821465 29821465 A G MAZ 3'UTR 0.28 TCGA-44-7659-01 16 48234284 48234284 G A ABCC11 Missense_Mutation p.S662F 0.21 deleterious(0) probably_damaging(0.998) TCGA-44-7659-01 16 71186617 71186617 A T HYDIN Missense_Mutation p.F262L 0.30 benign(0.004) TCGA-44-7659-01 16 72138456 72138457 - T DHX38 Frame_Shift_Ins p.G697Wfs*16 0.29 TCGA-44-7659-01 16 81934352 81934352 G T PLCG2 Silent p.S443S 0.33 TCGA-44-7659-01 17 16342490 16342490 C T TRPV2 3'Flank 0.17 TCGA-44-7659-01 17 17948473 17948473 G T GID4 Missense_Mutation p.G151W 0.32 deleterious(0.01) possibly_damaging(0.807) TCGA-44-7659-01 17 18135839 18135839 C T LLGL1 Silent p.G70G 0.21 TCGA-44-7659-01 17 26968943 26968943 C A KIAA0100 Missense_Mutation p.G244C 0.19 tolerated(0.09) benign(0.319) TCGA-44-7659-01 17 29622866 29622866 G T OMG Missense_Mutation p.P162T 0.25 deleterious(0) probably_damaging(0.992) TCGA-44-7659-01 17 43922518 43922518 C A SPPL2C Silent p.R82R 0.36 TCGA-44-7659-01 17 45219283 45219283 T C CDC27 Missense_Mutation p.Y502C 0.26 deleterious(0) probably_damaging(0.982) TCGA-44-7659-01 17 48917283 48917283 C A WFIKKN2 Missense_Mutation p.L212M 0.16 tolerated(0.1) benign(0.328) TCGA-44-7659-01 17 48917306 48917306 G C WFIKKN2 Missense_Mutation p.Q219H 0.19 tolerated(0.1) benign(0.132) TCGA-44-7659-01 17 6913280 6913288 CTGGTATGC - ALOX12 In_Frame_Del p.Y551_W553del 0.24 TCGA-44-7659-01 18 55359055 55359055 T A ATP8B1 Missense_Mutation p.I402F 0.30 deleterious(0) probably_damaging(0.98) TCGA-44-7659-01 18 61390583 61390584 CA - SERPINB11 Frame_Shift_Del p.T378Sfs*? 0.32 TCGA-44-7659-01 19 14875377 14875377 G T EMR2 Missense_Mutation p.L318M 0.18 tolerated(0.05) probably_damaging(0.99) TCGA-44-7659-01 19 21365588 21365588 A G ZNF431 Missense_Mutation p.Y161C 0.20 deleterious(0.03) possibly_damaging(0.872) TCGA-44-7659-01 19 22847904 22847904 A T ZNF492 Missense_Mutation p.K478M 0.27 deleterious(0) probably_damaging(0.985) TCGA-44-7659-01 19 36038271 36038271 G T TMEM147 Silent p.L199L 0.05 TCGA-44-7659-01 19 3982008 3982008 G T EEF2 Silent p.T278T 0.25 TCGA-44-7659-01 19 49377008 49377008 G A PPP1R15A Missense_Mutation p.G173E 0.26 tolerated(1) probably_damaging(0.994) TCGA-44-7659-01 19 49925835 49925835 G A PTH2 Silent p.L65L 0.38 TCGA-44-7659-01 19 51628630 51628630 C T SIGLEC9 Silent p.H133H 0.25 TCGA-44-7659-01 19 54848227 54848227 G T LILRA4 Missense_Mutation p.F380L 0.24 deleterious(0) probably_damaging(1) TCGA-44-7659-01 19 57037191 57037191 C T ZNF471 Silent p.S585S 0.04 TCGA-44-7659-01 19 58152547 58152547 G T ZNF211 Missense_Mutation p.W296C 0.26 tolerated(0.9) benign(0.048) TCGA-44-7659-01 19 6772930 6772930 C A VAV1 Silent p.R38R 0.22 TCGA-44-7659-01 1 111506335 111506335 T C LRIF1 5'UTR 0.19 TCGA-44-7659-01 1 142803427 142803427 C G RP11-423O2.5 RNA 0.19 TCGA-44-7659-01 1 151341499 151341499 C A SELENBP1 Missense_Mutation p.R114L 0.17 deleterious(0.04) benign(0.23) TCGA-44-7659-01 1 151755442 151755442 C A TDRKH Silent p.L19L 0.22 TCGA-44-7659-01 1 152281717 152281717 C T FLG Missense_Mutation p.G1882E 0.17 probably_damaging(0.982) TCGA-44-7659-01 1 156845419 156845419 G A NTRK1 Missense_Mutation p.G488S 0.29 tolerated(0.56) benign(0.135) TCGA-44-7659-01 1 158619707 158619707 T A SPTA1 Missense_Mutation p.R1170W 0.24 deleterious(0) possibly_damaging(0.9) TCGA-44-7659-01 1 158623075 158623075 C A SPTA1 Missense_Mutation p.Q1059H 0.18 deleterious(0.01) benign(0.015) TCGA-44-7659-01 1 16330828 16330828 G T C1orf64 Missense_Mutation p.W10C 0.33 tolerated(0.18) benign(0.415) TCGA-44-7659-01 1 165667799 165667799 T A ALDH9A1 5'UTR 0.29 TCGA-44-7659-01 1 165872437 165872437 A T UCK2 Missense_Mutation p.E173V 0.05 deleterious(0) possibly_damaging(0.789) TCGA-44-7659-01 1 167887550 167887550 C A MPC2 3'UTR 0.14 TCGA-44-7659-01 1 178485002 178485002 C G TEX35 Silent p.L56L 0.33 TCGA-44-7659-01 1 183515445 183515445 G T SMG7 Missense_Mutation p.Q859H 0.26 deleterious_low_confidence(0.02) probably_damaging(0.944) TCGA-44-7659-01 1 197397003 197397003 G A CRB1 Missense_Mutation p.G850S 0.20 deleterious(0) probably_damaging(1) TCGA-44-7659-01 1 205308439 205308439 A C KLHDC8A Missense_Mutation p.F214V 0.24 deleterious(0) possibly_damaging(0.564) TCGA-44-7659-01 1 234455930 234455930 G T SLC35F3 Missense_Mutation p.A412S 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-44-7659-01 1 248004356 248004356 G T OR11L1 Silent p.V281V 0.19 TCGA-44-7659-01 1 248201637 248201637 G T OR2L2 Missense_Mutation p.G23V 0.19 deleterious(0.03) possibly_damaging(0.774) TCGA-44-7659-01 1 248224693 248224693 A G OR2L3 Missense_Mutation p.Y237C 0.42 deleterious(0.02) probably_damaging(0.988) TCGA-44-7659-01 1 248308583 248308583 T C OR2M5 Missense_Mutation p.M45T 0.44 tolerated(0.08) benign(0.046) TCGA-44-7659-01 1 6527564 6527564 C T PLEKHG5 3'Flank 0.33 TCGA-44-7659-01 1 71873111 71873111 T A NEGR1 3'UTR 0.30 TCGA-44-7659-01 20 31811753 31811753 G A BPIFA3 Silent p.Q88Q 0.05 TCGA-44-7659-01 20 62071028 62071028 A C KCNQ2 Missense_Mutation p.Y284D 0.19 deleterious(0.03) possibly_damaging(0.861) TCGA-44-7659-01 21 11038981 11038981 T C BAGE2 RNA 0.06 TCGA-44-7659-01 21 37741631 37741631 T A MORC3 Silent p.V655V 0.24 TCGA-44-7659-01 21 46896293 46896293 C T COL18A1 Missense_Mutation p.A456V 0.21 unknown(0) TCGA-44-7659-01 22 18300821 18300821 C A MICAL3 Missense_Mutation p.D1536Y 0.23 possibly_damaging(0.871) TCGA-44-7659-01 22 18300822 18300822 C A MICAL3 Missense_Mutation p.E1535D 0.23 possibly_damaging(0.469) TCGA-44-7659-01 22 46627756 46627756 C T PPARA Missense_Mutation p.A260V 0.23 tolerated(0.47) benign(0.006) TCGA-44-7659-01 2 10922461 10922461 T A ATP6V1C2 Missense_Mutation p.F385Y 0.21 tolerated(1) benign(0.059) TCGA-44-7659-01 2 168100016 168100016 G T XIRP2 Missense_Mutation p.G705V 0.27 probably_damaging(0.99) TCGA-44-7659-01 2 168107682 168107682 G T XIRP2 Missense_Mutation p.E3260D 0.28 possibly_damaging(0.886) TCGA-44-7659-01 2 168107683 168107683 G T XIRP2 Nonsense_Mutation p.E3261* 0.28 TCGA-44-7659-01 2 176948244 176948244 G T EVX2 Silent p.T87T 0.24 TCGA-44-7659-01 2 179414066 179414066 T - TTN Frame_Shift_Del p.S30763Afs*5 0.25 TCGA-44-7659-01 2 179545040 179545040 C A TTN Missense_Mutation p.R11120M 0.22 TCGA-44-7659-01 2 185801843 185801843 G T ZNF804A Missense_Mutation p.D574Y 0.25 deleterious(0) possibly_damaging(0.754) TCGA-44-7659-01 2 196689076 196689076 C A DNAH7 Missense_Mutation p.R3065L 0.23 deleterious(0) possibly_damaging(0.745) TCGA-44-7659-01 2 217285103 217285103 G A SMARCAL1 Missense_Mutation p.S315N 0.05 tolerated(0.3) benign(0.014) TCGA-44-7659-01 2 220164773 220164773 G C PTPRN Missense_Mutation p.T457R 0.22 tolerated(0.52) benign(0.18) TCGA-44-7659-01 2 227896701 227896701 T A COL4A4 Silent p.P1259P 0.23 TCGA-44-7659-01 2 241420440 241420440 T C ANKMY1 Missense_Mutation p.Y898C 0.21 deleterious(0.02) benign(0.429) TCGA-44-7659-01 2 60689148 60689148 A T BCL11A Missense_Mutation p.V300E 0.27 deleterious(0.02) probably_damaging(0.99) TCGA-44-7659-01 2 85532493 85532493 C A TCF7L1 Missense_Mutation p.P319Q 0.05 tolerated(0.1) benign(0.376) TCGA-44-7659-01 2 88484880 88484880 G T THNSL2 Missense_Mutation p.D371Y 0.28 deleterious(0) probably_damaging(0.992) TCGA-44-7659-01 2 90108542 90108542 T C IGKV6D-41 Silent p.L5L 0.23 TCGA-44-7659-01 3 100567717 100567717 G T ABI3BP Missense_Mutation p.P460T 0.20 deleterious(0.02) possibly_damaging(0.641) TCGA-44-7659-01 3 113849986 113849986 G - DRD3 Frame_Shift_Del p.Q329Kfs*19 0.28 TCGA-44-7659-01 3 113850028 113850028 G - DRD3 Frame_Shift_Del p.L315Cfs*33 0.21 TCGA-44-7659-01 3 121208648 121208648 G A POLQ Missense_Mutation p.R1044C 0.04 tolerated_low_confidence(0.11) benign(0.001) TCGA-44-7659-01 3 193210752 193210752 G T ATP13A4 Missense_Mutation p.H163N 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-44-7659-01 3 48473961 48473961 C A CCDC51 Missense_Mutation p.G365W 0.05 deleterious(0.01) possibly_damaging(0.771) TCGA-44-7659-01 3 52544224 52544224 C A STAB1 Missense_Mutation p.H867Q 0.17 tolerated(0.73) benign(0.002) TCGA-44-7659-01 3 52584762 52584762 C A PBRM1 Splice_Site p.X1453_splice 0.43 TCGA-44-7659-01 3 63429126 63429126 G T SYNPR Intron 0.33 TCGA-44-7659-01 3 64004295 64004295 G A PSMD6 Missense_Mutation p.S269F 0.32 tolerated(0.07) benign(0.315) TCGA-44-7659-01 4 70351130 70351130 C A UGT2B4 Missense_Mutation p.R369I 0.24 deleterious(0) possibly_damaging(0.519) TCGA-44-7659-01 4 83279893 83279893 C A HNRNPD Silent p.P180P 0.31 TCGA-44-7659-01 5 134679002 134679002 C A H2AFY Missense_Mutation p.A301S 0.42 deleterious(0.04) probably_damaging(1) TCGA-44-7659-01 5 140236822 140236822 G T PCDHA10 Missense_Mutation p.V397L 0.20 tolerated_low_confidence(0.06) benign(0.162) TCGA-44-7659-01 5 140604499 140604499 C G PCDHB14 Missense_Mutation p.S474R 0.32 tolerated_low_confidence(0.12) benign(0.076) TCGA-44-7659-01 5 140746158 140746158 C A PCDHGA5 Missense_Mutation p.S754Y 0.21 deleterious_low_confidence(0) probably_damaging(0.918) TCGA-44-7659-01 5 149515374 149515374 T A PDGFRB Silent p.T36T 0.26 TCGA-44-7659-01 5 150947209 150947209 G A FAT2 Silent p.H428H 0.23 TCGA-44-7659-01 5 151777686 151777686 A G NMUR2 Missense_Mutation p.L249P 0.32 deleterious(0.02) probably_damaging(0.977) TCGA-44-7659-01 5 160049472 160049472 C A ATP10B Missense_Mutation p.A581S 0.55 tolerated(0.29) benign(0.403) TCGA-44-7659-01 5 33624444 33624444 C T ADAMTS12 Missense_Mutation p.D679N 0.44 deleterious(0) probably_damaging(1) TCGA-44-7659-01 5 33951714 33951714 G T SLC45A2 Silent p.V367V 0.35 TCGA-44-7659-01 5 43616166 43616166 G T NNT Missense_Mutation p.G200C 0.26 deleterious(0) probably_damaging(0.913) TCGA-44-7659-01 5 55164699 55164699 G A IL31RA Missense_Mutation p.E79K 0.24 tolerated(0.05) benign(0.251) TCGA-44-7659-01 6 32374895 32374895 C T BTNL2 Silent p.V2V 0.31 TCGA-44-7659-01 6 36104692 36104692 T C MAPK13 Missense_Mutation p.M216T 0.26 deleterious(0) probably_damaging(0.997) TCGA-44-7659-01 6 49704130 49704130 G T CRISP3 Missense_Mutation p.P78T 0.29 deleterious(0) probably_damaging(0.999) TCGA-44-7659-01 6 56044716 56044716 C - COL21A1 Frame_Shift_Del p.T101Rfs*10 0.30 TCGA-44-7659-01 6 84234289 84234289 G T PRSS35 Missense_Mutation p.D377Y 0.18 deleterious(0) probably_damaging(0.969) TCGA-44-7659-01 6 99282721 99282721 C A POU3F2 5'UTR 0.31 TCGA-44-7659-01 7 102574765 102574765 A T LRRC17 Missense_Mutation p.L135F 0.25 deleterious(0.01) probably_damaging(1) TCGA-44-7659-01 7 128097537 128097537 C T HILPDA 3'UTR 0.31 TCGA-44-7659-01 7 128441511 128441511 G T CCDC136 Missense_Mutation p.K206N 0.16 deleterious(0) probably_damaging(1) TCGA-44-7659-01 7 128484144 128484144 C A FLNC Missense_Mutation p.P1006T 0.34 deleterious(0.02) probably_damaging(1) TCGA-44-7659-01 7 141896544 141896544 G C RP11-1220K2.2 Missense_Mutation p.E1520D 0.26 possibly_damaging(0.767) TCGA-44-7659-01 7 143043333 143043333 C A CLCN1 Missense_Mutation p.P758Q 0.23 tolerated(0.21) benign(0.01) TCGA-44-7659-01 7 151874411 151874411 G A KMT2C Silent p.V2709V 0.24 TCGA-44-7659-01 7 157060505 157060505 G T UBE3C 3'UTR 0.28 TCGA-44-7659-01 7 37956011 37956011 G - SFRP4 Frame_Shift_Del p.N44Tfs*24 0.26 TCGA-44-7659-01 7 42063167 42063167 T C GLI3 Missense_Mutation p.D466G 0.17 deleterious(0) possibly_damaging(0.533) TCGA-44-7659-01 7 50694650 50694650 C T GRB10 Missense_Mutation p.G177E 0.25 tolerated(0.11) possibly_damaging(0.65) TCGA-44-7659-01 7 84629152 84629152 C A SEMA3D Silent p.T646T 0.31 TCGA-44-7659-01 7 94053727 94053727 G A COL1A2 Missense_Mutation p.R882H 0.23 unknown(0) TCGA-44-7659-01 7 98987630 98987630 G C ARPC1B Missense_Mutation p.K165N 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-44-7659-01 8 107773518 107773518 C G ABRA Missense_Mutation p.R298T 0.27 deleterious(0) probably_damaging(0.999) TCGA-44-7659-01 8 133048637 133048637 C G OC90 Intron 0.25 TCGA-44-7659-01 8 49985352 49985352 G A C8orf22 5'UTR 0.29 TCGA-44-7659-01 9 107267390 107267390 C A OR13F1 Missense_Mutation p.P283T 0.32 deleterious(0.01) probably_damaging(1) TCGA-44-7659-01 9 119976989 119976989 C A ASTN2 Silent p.L221L 0.33 TCGA-44-7659-01 9 21409660 21409660 G A IFNA8 Missense_Mutation p.C162Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-44-7659-01 9 32541434 32541434 C A TOPORS Missense_Mutation p.R1030L 0.27 deleterious_low_confidence(0) unknown(0) TCGA-44-7659-01 9 37745408 37745408 G T FRMPD1 Nonsense_Mutation p.E1127* 0.20 TCGA-44-7659-01 9 79325166 79325166 T C PRUNE2 Missense_Mutation p.E675G 0.24 deleterious(0.01) benign(0.055) TCGA-44-7659-01 9 84530312 84530312 G A SPATA31D5P RNA 0.27 TCGA-44-7659-01 9 8484343 8484343 C A PTPRD Silent p.V1063V 0.24 TCGA-44-7659-01 X 142795254 142795254 C A SPANXN2 Missense_Mutation p.D142Y 0.46 deleterious(0.02) unknown(0) TCGA-44-7659-01 X 150832592 150832592 C G PASD1 Silent p.A281A 0.67 TCGA-44-7659-01 X 1714286 1714286 G T AKAP17A Missense_Mutation p.D258Y 0.40 deleterious(0) probably_damaging(0.988) TCGA-44-7659-01 X 38024106 38024106 C A SRPX Missense_Mutation p.R190L 0.52 deleterious(0.01) possibly_damaging(0.591) TCGA-44-7659-01 X 47044523 47044523 C T RBM10 Nonsense_Mutation p.Q674* 0.56 TCGA-44-7659-01 X 69424966 69424966 C A DGAT2L6 3'UTR 0.60 TCGA-44-7659-01 X 6995490 6995490 C A HDHD1 Missense_Mutation p.G117V 0.53 deleterious(0) probably_damaging(0.999) TCGA-44-7659-01 X 70127661 70127661 C A TEX11 Splice_Site 0.48 TCGA-44-7659-01 X 73812447 73812447 T C RLIM Missense_Mutation p.M235V 0.67 tolerated(0.34) unknown(0) TCGA-44-7659-01 X 84585975 84585975 A T POF1B Missense_Mutation p.H278Q 0.58 deleterious(0) probably_damaging(0.998) TCGA-44-7659-01 X 91873486 91873486 C T PCDH11X Silent p.H1197H 0.08 TCGA-44-7660-01 10 101716378 101716378 G A DNMBP Silent p.L285L 0.08 TCGA-44-7660-01 10 115377298 115377298 C A NRAP Missense_Mutation p.Q963H 0.54 deleterious(0) probably_damaging(0.998) TCGA-44-7660-01 10 115377299 115377299 T G NRAP Missense_Mutation p.Q963P 0.54 deleterious(0) probably_damaging(0.995) TCGA-44-7660-01 10 118434788 118434788 C - HSPA12A Frame_Shift_Del p.G511Afs*29 0.47 TCGA-44-7660-01 10 135368927 135368927 C G SYCE1 Silent p.L282L 0.07 TCGA-44-7660-01 10 14879906 14879906 C A CDNF Missense_Mutation p.A14S 0.22 tolerated(0.17) benign(0.313) TCGA-44-7660-01 10 15145923 15145923 A T RPP38 Missense_Mutation p.S204C 0.05 tolerated(0.08) possibly_damaging(0.598) TCGA-44-7660-01 10 16948391 16948391 G C CUBN Missense_Mutation p.P2575A 0.29 tolerated(0.41) benign(0.004) TCGA-44-7660-01 10 16960655 16960655 G - CUBN Frame_Shift_Del p.T2323Hfs*11 0.26 TCGA-44-7660-01 10 16989299 16989299 G A CUBN Silent p.P1759P 0.25 TCGA-44-7660-01 10 17362880 17362880 G T ST8SIA6 Silent p.A398A 0.30 TCGA-44-7660-01 10 28276314 28276314 C T ARMC4 Splice_Site p.X128_splice 0.15 TCGA-44-7660-01 10 30655350 30655350 G C AL161651.1 5'Flank 0.24 TCGA-44-7660-01 10 35299152 35299152 T C CUL2 3'Flank 0.35 TCGA-44-7660-01 10 44052824 44052824 T C ZNF239 Missense_Mutation p.Y235C 0.34 deleterious(0.05) benign(0.026) TCGA-44-7660-01 10 55587283 55587283 C A PCDH15 Missense_Mutation p.A1413S 0.33 deleterious(0) probably_damaging(0.999) TCGA-44-7660-01 10 61844979 61844979 T C ANK3 Missense_Mutation p.T1261A 0.35 possibly_damaging(0.874) TCGA-44-7660-01 10 72643651 72643651 G T PCBD1 3'UTR 0.12 TCGA-44-7660-01 10 73053603 73053603 G T UNC5B Missense_Mutation p.Q696H 0.20 deleterious(0.03) benign(0.073) TCGA-44-7660-01 10 74631209 74631209 C G MCU Silent p.A244A 0.21 TCGA-44-7660-01 10 8007078 8007078 G C TAF3 Missense_Mutation p.K535N 0.14 tolerated_low_confidence(0.1) probably_damaging(0.95) TCGA-44-7660-01 10 81926673 81926673 T A ANXA11 Silent p.L239L 0.50 TCGA-44-7660-01 10 91478615 91478615 G A KIF20B Missense_Mutation p.A474T 0.23 deleterious(0.04) possibly_damaging(0.491) TCGA-44-7660-01 10 95791470 95791470 G C PLCE1 Missense_Mutation p.E223Q 0.20 tolerated_low_confidence(0.59) benign(0.009) TCGA-44-7660-01 11 114182768 114182768 G C NNMT Missense_Mutation p.V122L 0.41 tolerated(0.27) benign(0.007) TCGA-44-7660-01 11 117100204 117100204 A T PCSK7 Silent p.A119A 0.05 TCGA-44-7660-01 11 118422957 118422957 T C IFT46 Missense_Mutation p.K244E 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-44-7660-01 11 119060200 119060200 A G PDZD3 Nonstop_Mutation p.*506Wext*20 0.38 TCGA-44-7660-01 11 120345320 120345320 A G ARHGEF12 Missense_Mutation p.K1029E 0.06 deleterious(0) probably_damaging(0.962) TCGA-44-7660-01 11 123813703 123813703 G C OR6T1 Missense_Mutation p.I281M 0.03 deleterious(0.02) benign(0.314) TCGA-44-7660-01 11 123900413 123900413 C T OR10G8 Silent p.V28V 0.34 TCGA-44-7660-01 11 123900428 123900428 C A OR10G8 Nonsense_Mutation p.Y33* 0.29 TCGA-44-7660-01 11 124413490 124413490 C A OR8B12 Nonsense_Mutation p.G21* 0.34 TCGA-44-7660-01 11 124440190 124440190 A T OR8A1 Missense_Mutation p.M76L 0.03 deleterious(0) benign(0.142) TCGA-44-7660-01 11 126163051 126163051 G A TIRAP 3'UTR 0.10 TCGA-44-7660-01 11 128680939 128680939 G A FLI1 3'UTR 0.33 TCGA-44-7660-01 11 132082002 132082002 C G NTM Missense_Mutation p.P163A 0.54 deleterious(0) possibly_damaging(0.879) TCGA-44-7660-01 11 17167258 17167258 A G PIK3C2A Missense_Mutation p.L554S 0.06 deleterious(0) possibly_damaging(0.864) TCGA-44-7660-01 11 17483148 17483148 C A ABCC8 Missense_Mutation p.E268D 0.06 tolerated(0.89) benign(0) TCGA-44-7660-01 11 20805357 20805357 A G NELL1 Missense_Mutation p.I106V 0.10 tolerated(0.08) benign(0.123) TCGA-44-7660-01 11 282776 282776 T G NLRP6 Missense_Mutation p.L727R 0.07 tolerated(0.47) benign(0.001) TCGA-44-7660-01 11 4790412 4790412 G T OR51F1 Missense_Mutation p.H246N 0.05 deleterious(0) probably_damaging(1) TCGA-44-7660-01 11 4843054 4843054 A G OR51F2 Missense_Mutation p.T147A 0.04 tolerated(1) benign(0.004) TCGA-44-7660-01 11 49974019 49974019 T C OR4C13 Silent p.L15L 0.08 TCGA-44-7660-01 11 5142482 5142482 G T OR52A4 RNA 0.43 TCGA-44-7660-01 11 55037958 55037958 G T TRIM48 3'UTR 0.51 TCGA-44-7660-01 11 55418652 55418652 C G OR4S2 Silent p.S91S 0.19 TCGA-44-7660-01 11 55563766 55563766 C A OR5D14 Silent p.S245S 0.16 TCGA-44-7660-01 11 55563767 55563767 C A OR5D14 Missense_Mutation p.H246N 0.16 deleterious(0.01) probably_damaging(1) TCGA-44-7660-01 11 56044049 56044049 C T OR5T1 Missense_Mutation p.A312V 0.46 deleterious(0.01) benign(0.417) TCGA-44-7660-01 11 56044051 56044051 A T OR5T1 Missense_Mutation p.I313F 0.46 tolerated(0.19) benign(0.002) TCGA-44-7660-01 11 56058516 56058516 T C OR8H1 Missense_Mutation p.N8S 0.25 tolerated(0.86) benign(0.15) TCGA-44-7660-01 11 56431909 56431909 C A OR5AR1 Missense_Mutation p.L250I 0.34 tolerated(1) probably_damaging(0.999) TCGA-44-7660-01 11 56757206 56757206 T A OR5AK2 Missense_Mutation p.V273E 0.16 deleterious(0) possibly_damaging(0.883) TCGA-44-7660-01 11 59347700 59347700 A C OSBP Missense_Mutation p.C609G 0.20 deleterious(0) probably_damaging(0.999) TCGA-44-7660-01 11 60215127 60215127 T A MS4A5 Silent p.I166I 0.16 TCGA-44-7660-01 11 62288267 62288267 A G AHNAK Missense_Mutation p.V4541A 0.15 possibly_damaging(0.458) TCGA-44-7660-01 11 62371621 62371621 C T EML3 Missense_Mutation p.G679S 0.05 deleterious(0) probably_damaging(1) TCGA-44-7660-01 11 62760801 62760801 G T SLC22A8 Silent p.R513R 0.21 TCGA-44-7660-01 11 70194393 70194393 C G PPFIA1 Nonsense_Mutation p.S677* 0.12 TCGA-44-7660-01 11 71276797 71276797 G C KRTAP5-10 Missense_Mutation p.C55S 0.13 unknown(0) TCGA-44-7660-01 11 71906378 71906378 G A FOLR1 Missense_Mutation p.V78I 0.35 tolerated(0.2) benign(0.009) TCGA-44-7660-01 11 73765701 73765701 C A C2CD3 Silent p.L1702L 0.23 TCGA-44-7660-01 11 92534534 92534534 C T FAT3 Silent p.A2785A 0.29 TCGA-44-7660-01 11 94201034 94201034 T A MRE11A Missense_Mutation p.E348V 0.36 deleterious(0.03) benign(0.326) TCGA-44-7660-01 12 104336952 104336952 A G HSP90B1 Missense_Mutation p.E582G 0.10 deleterious(0) probably_damaging(0.965) TCGA-44-7660-01 12 10583665 10583665 T C KLRC2 3'UTR 0.37 TCGA-44-7660-01 12 114793522 114793522 G C TBX5 Missense_Mutation p.Q458E 0.08 tolerated_low_confidence(0.11) benign(0.319) TCGA-44-7660-01 12 121131987 121131987 G T MLEC Missense_Mutation p.G110V 0.45 deleterious(0) probably_damaging(0.992) TCGA-44-7660-01 12 125279800 125279809 GGGGATTCCC - SCARB1 Frame_Shift_Del p.G379* 0.29 TCGA-44-7660-01 12 130184785 130184785 G T TMEM132D Silent p.R180R 0.46 TCGA-44-7660-01 12 14018784 14018784 A T GRIN2B Missense_Mutation p.L120H 0.07 tolerated(0.77) benign(0.022) TCGA-44-7660-01 12 14959145 14959145 G T SMCO3 Missense_Mutation p.A157D 0.46 tolerated(0.08) benign(0.3) TCGA-44-7660-01 12 23687239 23687239 A G SOX5 Missense_Mutation p.Y736H 0.27 tolerated(0.05) probably_damaging(0.991) TCGA-44-7660-01 12 38714214 38714214 G A ALG10B Silent p.E207E 0.31 TCGA-44-7660-01 12 40020041 40020041 G A C12orf40 5'UTR 0.25 TCGA-44-7660-01 12 45796949 45796949 A G ANO6 Missense_Mutation p.I590M 0.36 deleterious(0) probably_damaging(0.928) TCGA-44-7660-01 12 49373420 49373420 G C WNT1 Missense_Mutation p.E92Q 0.04 deleterious(0) probably_damaging(0.986) TCGA-44-7660-01 12 49442514 49442514 C T KMT2D Silent p.E1353E 0.11 TCGA-44-7660-01 12 50186368 50186368 G A NCKAP5L Missense_Mutation p.P1218L 0.11 tolerated(0.4) benign(0.156) TCGA-44-7660-01 12 52881659 52881659 T A KRT6A Missense_Mutation p.S514C 0.25 tolerated(0.13) unknown(0) TCGA-44-7660-01 12 52881665 52881665 C T KRT6A Missense_Mutation p.G512R 0.09 deleterious(0.01) unknown(0) TCGA-44-7660-01 12 52884453 52884453 C A KRT6A Missense_Mutation p.R326L 0.38 deleterious(0) probably_damaging(0.991) TCGA-44-7660-01 12 55886732 55886732 T A OR6C68 Missense_Mutation p.S191T 0.43 deleterious_low_confidence(0.04) benign(0.028) TCGA-44-7660-01 12 56848359 56848359 T C MIP Missense_Mutation p.I13M 0.35 deleterious(0) possibly_damaging(0.862) TCGA-44-7660-01 12 57440397 57440397 T A MYO1A Missense_Mutation p.K193N 0.40 deleterious(0.03) benign(0.281) TCGA-44-7660-01 12 6140700 6140700 C - VWF Frame_Shift_Del p.N911Ifs*9 0.19 TCGA-44-7660-01 12 75444442 75444442 C A KCNC2 Missense_Mutation p.W448L 0.26 deleterious(0.01) probably_damaging(0.909) TCGA-44-7660-01 12 75444443 75444443 A T KCNC2 Missense_Mutation p.W448R 0.26 deleterious(0) probably_damaging(0.985) TCGA-44-7660-01 12 8975819 8975819 C T A2ML1 Missense_Mutation p.S35F 0.38 deleterious(0.02) possibly_damaging(0.746) TCGA-44-7660-01 12 91502573 91502573 G T LUM Missense_Mutation p.P62T 0.30 deleterious(0) probably_damaging(1) TCGA-44-7660-01 12 9301556 9301556 C A PZP 3'UTR 0.14 TCGA-44-7660-01 13 115037765 115037765 A G CDC16 Silent p.V570V 0.05 TCGA-44-7660-01 13 24243246 24243246 C T TNFRSF19 Nonsense_Mutation p.R419* 0.12 TCGA-44-7660-01 13 25044048 25044048 T C PARP4 Missense_Mutation p.K677R 0.15 deleterious(0.04) possibly_damaging(0.766) TCGA-44-7660-01 13 32915220 32915220 C G BRCA2 Missense_Mutation p.S2243C 0.05 tolerated(0.08) benign(0.178) TCGA-44-7660-01 13 36900656 36900656 T C SPG20 Intron 0.70 TCGA-44-7660-01 13 49027249 49027249 T A RB1 Splice_Site p.X605_splice 0.58 TCGA-44-7660-01 13 50589582 50589582 T C TRIM13 3'Flank 0.78 TCGA-44-7660-01 13 61986436 61986436 C G PCDH20 Missense_Mutation p.R599P 0.34 deleterious(0) probably_damaging(1) TCGA-44-7660-01 13 79894730 79894730 C G RBM26 3'UTR 0.20 TCGA-44-7660-01 13 99047614 99047614 G T FARP1 Missense_Mutation p.S433I 0.23 deleterious(0.04) benign(0.027) TCGA-44-7660-01 14 106667841 106667841 C G IGHV3-20 Missense_Mutation p.V31L 0.21 deleterious_low_confidence(0.03) benign(0.168) TCGA-44-7660-01 14 24729143 24729143 T C TGM1 Intron 0.29 TCGA-44-7660-01 14 26917626 26917626 C T NOVA1 Missense_Mutation p.A355T 0.07 tolerated(0.26) benign(0.003) TCGA-44-7660-01 14 31348048 31348048 C A COCH Silent p.R91R 0.32 TCGA-44-7660-01 14 31585576 31585576 C A HECTD1 Silent p.T1828T 0.32 TCGA-44-7660-01 14 39583492 39583492 G A GEMIN2 5'UTR 0.43 TCGA-44-7660-01 14 39868928 39868928 A G FBXO33 Missense_Mutation p.V487A 0.33 tolerated(0.27) benign(0.057) TCGA-44-7660-01 14 64193979 64193979 C A SGPP1 Missense_Mutation p.Q228H 0.07 deleterious(0) probably_damaging(0.918) TCGA-44-7660-01 14 69341722 69341722 T C ACTN1 Missense_Mutation p.M867V 0.28 tolerated(0.17) benign(0) TCGA-44-7660-01 14 75747933 75747933 G C FOS Missense_Mutation p.A317P 0.06 tolerated(0.15) benign(0) TCGA-44-7660-01 14 77846730 77846730 G - SAMD15 Frame_Shift_Del p.C565Ffs*25 0.27 TCGA-44-7660-01 14 81744686 81744686 T C STON2 Silent p.V323V 0.15 TCGA-44-7660-01 14 94083493 94083493 G C UNC79 Missense_Mutation p.G1179A 0.07 deleterious(0.04) probably_damaging(0.999) TCGA-44-7660-01 14 94578019 94578019 C T IFI27 5'UTR 0.30 TCGA-44-7660-01 15 25463854 25463854 G T SNORD115-27 5'Flank 0.08 TCGA-44-7660-01 15 27193381 27193381 C T GABRA5 3'UTR 0.27 TCGA-44-7660-01 15 29346360 29346360 T A APBA2 Silent p.P91P 0.50 TCGA-44-7660-01 15 31862369 31862369 G T OTUD7A Missense_Mutation p.S61R 0.61 deleterious(0.01) benign(0.329) TCGA-44-7660-01 15 43028100 43028100 T C CDAN1 Missense_Mutation p.E249G 0.51 deleterious(0) probably_damaging(0.979) TCGA-44-7660-01 15 49030928 49030928 T C CEP152 Missense_Mutation p.K1551E 0.59 tolerated(0.1) benign(0.009) TCGA-44-7660-01 15 53908296 53908296 A G WDR72 Missense_Mutation p.S703P 0.06 tolerated(1) benign(0.001) TCGA-44-7660-01 15 54307573 54307573 A C UNC13C Missense_Mutation p.S825R 0.29 deleterious_low_confidence(0) possibly_damaging(0.572) TCGA-44-7660-01 15 62209817 62209817 T A VPS13C Missense_Mutation p.Q2593L 0.67 tolerated(0.08) benign(0.003) TCGA-44-7660-01 15 86123274 86123274 G A AKAP13 Missense_Mutation p.D659N 0.19 tolerated_low_confidence(0.14) benign(0.396) TCGA-44-7660-01 16 23226855 23226855 G A SCNN1G 3'UTR 0.16 TCGA-44-7660-01 16 23652474 23652474 T C PALB2 Missense_Mutation p.D2G 0.22 tolerated(0.08) benign(0.193) TCGA-44-7660-01 16 24582366 24582366 G T RBBP6 Nonsense_Mutation p.E1327* 0.59 TCGA-44-7660-01 16 3454445 3454445 G T ZNF174 Missense_Mutation p.G141V 0.56 deleterious(0.02) probably_damaging(0.999) TCGA-44-7660-01 16 53357965 53357965 C G CHD9 Missense_Mutation p.L2602V 0.05 unknown(0) TCGA-44-7660-01 16 53403293 53403293 A G RP11-44F14.1 RNA 0.73 TCGA-44-7660-01 16 53653061 53653061 G T RPGRIP1L Silent p.T1164T 0.22 TCGA-44-7660-01 16 57059658 57059658 C T NLRC5 Missense_Mutation p.T268M 0.61 deleterious(0.01) probably_damaging(0.953) TCGA-44-7660-01 16 67220756 67220756 A T EXOC3L1 Missense_Mutation p.L397Q 0.53 deleterious(0) probably_damaging(1) TCGA-44-7660-01 17 10309661 10309661 T C MYH8 Missense_Mutation p.K742R 0.54 tolerated(0.55) benign(0.137) TCGA-44-7660-01 17 10442569 10442569 G T MYH2 Missense_Mutation p.Q457K 0.25 deleterious(0.01) possibly_damaging(0.704) TCGA-44-7660-01 17 32598250 32598250 C G CCL7 Silent p.T54T 0.48 TCGA-44-7660-01 17 32612886 32612886 A T CCL11 Missense_Mutation p.Q20L 0.04 tolerated(0.12) benign(0.013) TCGA-44-7660-01 17 33802328 33802328 A C SLFN12L Missense_Mutation p.C461G 0.32 deleterious(0) probably_damaging(0.994) TCGA-44-7660-01 17 37607508 37607508 C A MED1 5'UTR 0.46 TCGA-44-7660-01 17 37687195 37687195 G A CDK12 Missense_Mutation p.V1367I 0.26 benign(0.071) TCGA-44-7660-01 17 39274215 39274215 C G KRTAP4-11 Missense_Mutation p.S118T 0.24 tolerated(0.16) unknown(0) TCGA-44-7660-01 17 39976649 39976649 C A FKBP10 Missense_Mutation p.L398I 0.06 tolerated(0.13) benign(0.003) TCGA-44-7660-01 17 48153757 48153757 C T ITGA3 Missense_Mutation p.P581L 0.03 deleterious(0.01) possibly_damaging(0.908) TCGA-44-7660-01 17 48271957 48271957 C T COL1A1 Missense_Mutation p.A498T 0.62 unknown(0) TCGA-44-7660-01 17 59560456 59560456 G T TBX4 Missense_Mutation p.G406V 0.45 deleterious_low_confidence(0.03) benign(0.11) TCGA-44-7660-01 17 65103364 65103364 T G HELZ Missense_Mutation p.Q1721P 0.39 deleterious_low_confidence(0.03) unknown(0) TCGA-44-7660-01 17 67286110 67286110 C A ABCA5 Missense_Mutation p.G559C 0.37 deleterious(0) probably_damaging(1) TCGA-44-7660-01 17 6918444 6918444 C G C17orf49 Missense_Mutation p.L29V 0.19 deleterious(0) probably_damaging(0.996) TCGA-44-7660-01 17 72348457 72348457 A T KIF19 Missense_Mutation p.Q653L 0.40 tolerated(0.36) benign(0.001) TCGA-44-7660-01 17 74942482 74942482 T C MGAT5B Missense_Mutation p.Y634H 0.30 deleterious(0) probably_damaging(1) TCGA-44-7660-01 17 7574021 7574021 C A TP53 Nonsense_Mutation p.E336* 0.38 TCGA-44-7660-01 17 76120773 76120773 G T TMC6 Missense_Mutation p.F241L 0.28 deleterious(0) possibly_damaging(0.539) TCGA-44-7660-01 17 7826285 7826285 G C KCNAB3 3'UTR 0.45 TCGA-44-7660-01 17 80676907 80676907 G A FN3KRP Silent p.E89E 0.29 TCGA-44-7660-01 18 11876671 11876671 T A GNAL Missense_Mutation p.I405N 0.10 deleterious(0) probably_damaging(0.995) TCGA-44-7660-01 18 14851635 14851635 A C ANKRD30B Missense_Mutation p.Y1112S 0.40 deleterious(0) probably_damaging(0.986) TCGA-44-7660-01 18 14851722 14851722 C A ANKRD30B Missense_Mutation p.A1141E 0.34 tolerated(0.08) probably_damaging(0.986) TCGA-44-7660-01 18 23895283 23895283 G C TAF4B Missense_Mutation p.L641F 0.06 tolerated(0.07) benign(0.272) TCGA-44-7660-01 18 28609478 28609478 T C DSC3 Silent p.Q157Q 0.43 TCGA-44-7660-01 18 40554087 40554087 C G RIT2 Missense_Mutation p.R62S 0.23 tolerated(0.7) possibly_damaging(0.9) TCGA-44-7660-01 18 5419879 5419879 G A EPB41L3 Intron 0.46 TCGA-44-7660-01 18 67068488 67068488 C G DOK6 Missense_Mutation p.S3C 0.33 deleterious(0.01) possibly_damaging(0.76) TCGA-44-7660-01 18 67794907 67794907 G A RTTN Silent p.L1072L 0.33 TCGA-44-7660-01 18 74696830 74696830 T A RP11-862L9.3 3'Flank 0.28 TCGA-44-7660-01 18 77455230 77455230 T C CTDP1 Missense_Mutation p.V107A 0.23 tolerated(0.26) possibly_damaging(0.496) TCGA-44-7660-01 19 10602767 10602767 C T KEAP1 Missense_Mutation p.V271M 0.53 deleterious(0) probably_damaging(0.986) TCGA-44-7660-01 19 15302287 15302287 G C NOTCH3 Silent p.T328T 0.57 TCGA-44-7660-01 19 16339676 16339676 G A AP1M1 Silent p.T340T 0.67 TCGA-44-7660-01 19 17025618 17025618 G A CPAMD8 Missense_Mutation p.T1259I 0.64 deleterious(0) probably_damaging(1) TCGA-44-7660-01 19 20806935 20806935 A C ZNF626 3'UTR 0.35 TCGA-44-7660-01 19 21476571 21476571 T C ZNF708 Silent p.K399K 0.18 TCGA-44-7660-01 19 22939740 22939740 C A ZNF99 3'Flank 0.37 TCGA-44-7660-01 19 30934735 30934735 G A ZNF536 Missense_Mutation p.G89D 0.33 tolerated_low_confidence(0.31) benign(0.092) TCGA-44-7660-01 19 30935518 30935518 G T ZNF536 Missense_Mutation p.C350F 0.28 deleterious(0) probably_damaging(0.999) TCGA-44-7660-01 19 31767428 31767428 C G TSHZ3 3'UTR 0.41 TCGA-44-7660-01 19 36297721 36297721 G T PRODH2 Silent p.A306A 0.22 TCGA-44-7660-01 19 36349635 36349635 G T KIRREL2 Missense_Mutation p.G131C 0.40 deleterious(0) probably_damaging(0.99) TCGA-44-7660-01 19 36728021 36728021 C G ZNF146 Missense_Mutation p.L227V 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-44-7660-01 19 38134227 38134227 T A ZFP30 Silent p.L58L 0.33 TCGA-44-7660-01 19 38682942 38682942 G C SIPA1L3 Missense_Mutation p.D1530H 0.14 tolerated(0.06) possibly_damaging(0.528) TCGA-44-7660-01 19 39328054 39328054 A T AC104534.3 Missense_Mutation p.F178I 0.34 tolerated(0.28) benign(0.151) TCGA-44-7660-01 19 40828069 40828069 C A C19orf47 Missense_Mutation p.R330L 0.33 deleterious(0.01) possibly_damaging(0.58) TCGA-44-7660-01 19 42342153 42342153 G T LYPD4 Missense_Mutation p.P132T 0.16 deleterious(0.01) benign(0.272) TCGA-44-7660-01 19 43709780 43709780 C T PSG4 5'UTR 0.32 TCGA-44-7660-01 19 4408903 4408903 G T CHAF1A Missense_Mutation p.R36L 0.67 deleterious(0) benign(0.25) TCGA-44-7660-01 19 45998025 45998025 G T RTN2 Silent p.G106G 0.32 TCGA-44-7660-01 19 49132021 49132021 T A SPHK2 Missense_Mutation p.L319H 0.08 deleterious(0) possibly_damaging(0.806) TCGA-44-7660-01 19 49387296 49387296 C A TULP2 Missense_Mutation p.V357F 0.39 deleterious(0) possibly_damaging(0.701) TCGA-44-7660-01 19 50381461 50381461 A G TBC1D17 Missense_Mutation p.D28G 0.25 deleterious(0.04) benign(0.198) TCGA-44-7660-01 19 51410224 51410224 G C KLK4 Missense_Mutation p.T244S 0.30 tolerated(0.17) benign(0.295) TCGA-44-7660-01 19 55220440 55220440 A G AC098784.2 3'Flank 0.12 TCGA-44-7660-01 19 55396647 55396647 G T FCAR Missense_Mutation p.G24V 0.27 deleterious(0.02) possibly_damaging(0.891) TCGA-44-7660-01 19 56539602 56539602 G T NLRP5 Missense_Mutation p.W668L 0.32 deleterious(0) probably_damaging(0.974) TCGA-44-7660-01 19 57037085 57037085 A G ZNF471 Missense_Mutation p.K550R 0.10 deleterious(0.03) probably_damaging(0.99) TCGA-44-7660-01 19 57325232 57325232 A C PEG3 Silent p.T1526T 0.33 TCGA-44-7660-01 19 58578995 58578995 C T ZNF135 Silent p.P405P 0.22 TCGA-44-7660-01 19 7998446 7998446 C T TIMM44 Silent p.L231L 0.17 TCGA-44-7660-01 19 9237507 9237507 C A OR7G3 Silent p.L40L 0.19 TCGA-44-7660-01 1 100206374 100206374 G A FRRS1 Missense_Mutation p.P184L 0.14 tolerated(0.4) benign(0.011) TCGA-44-7660-01 1 109394807 109394807 C A AKNAD1 Missense_Mutation p.W160C 0.26 tolerated(0.1) benign(0.099) TCGA-44-7660-01 1 112026354 112026354 C T ADORA3 Silent p.S333S 0.18 TCGA-44-7660-01 1 152286065 152286065 C G FLG Missense_Mutation p.D433H 0.14 probably_damaging(0.995) TCGA-44-7660-01 1 152733152 152733152 G A KPRP Nonsense_Mutation p.W363* 0.36 TCGA-44-7660-01 1 152800071 152800071 T C LCE1A Silent p.S41S 0.31 TCGA-44-7660-01 1 153660672 153660672 C T NPR1 Missense_Mutation p.R798C 0.07 deleterious(0) probably_damaging(0.953) TCGA-44-7660-01 1 154218759 154218759 C G UBAP2L Missense_Mutation p.P308A 0.04 tolerated(0.15) unknown(0) TCGA-44-7660-01 1 158687120 158687120 G T OR6K3 Missense_Mutation p.S262R 0.34 tolerated(0.08) benign(0.266) TCGA-44-7660-01 1 159284311 159284311 T C OR10J3 Missense_Mutation p.M47V 0.09 tolerated(1) benign(0) TCGA-44-7660-01 1 160319441 160319441 G T NCSTN Missense_Mutation p.Q139H 0.32 tolerated(0.09) benign(0.002) TCGA-44-7660-01 1 160851746 160851746 C T ITLN1 Splice_Site p.X135_splice 0.04 TCGA-44-7660-01 1 161023062 161023062 C - ARHGAP30 Frame_Shift_Del p.G217Vfs*68 0.32 TCGA-44-7660-01 1 161134865 161134865 C T USP21 Silent p.S513S 0.05 TCGA-44-7660-01 1 16261619 16261619 G A SPEN Missense_Mutation p.D2962N 0.51 probably_damaging(0.967) TCGA-44-7660-01 1 165370517 165370517 G T RXRG Missense_Mutation p.P459T 0.32 deleterious(0) probably_damaging(0.985) TCGA-44-7660-01 1 171244541 171244541 G T FMO1 Missense_Mutation p.E126D 0.38 tolerated(1) benign(0.032) TCGA-44-7660-01 1 172013594 172013594 C G DNM3 Splice_Site p.X399_splice 0.47 TCGA-44-7660-01 1 175375846 175375846 C A TNR Missense_Mutation p.G2V 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.807) TCGA-44-7660-01 1 180165560 180165560 C G QSOX1 Missense_Mutation p.F544L 0.06 tolerated(0.51) benign(0) TCGA-44-7660-01 1 182847304 182847304 G C DHX9 Missense_Mutation p.E783Q 0.34 tolerated(0.21) possibly_damaging(0.588) TCGA-44-7660-01 1 197071758 197071758 T A ASPM Missense_Mutation p.Y2208F 0.05 tolerated(0.65) benign(0.019) TCGA-44-7660-01 1 202245610 202245610 C G LGR6 Missense_Mutation p.P202R 0.21 deleterious(0) probably_damaging(1) TCGA-44-7660-01 1 203652500 203652500 G A ATP2B4 Missense_Mutation p.S56N 0.38 tolerated(0.11) benign(0.003) TCGA-44-7660-01 1 203680201 203680201 G A ATP2B4 Missense_Mutation p.A666T 0.30 tolerated(0.07) benign(0.072) TCGA-44-7660-01 1 207318134 207318134 C T C4BPA 3'UTR 0.27 TCGA-44-7660-01 1 222846694 222846694 C G AIDA Missense_Mutation p.D223H 0.10 deleterious(0.01) possibly_damaging(0.629) TCGA-44-7660-01 1 224605976 224605976 G A WDR26 Silent p.D335D 0.33 TCGA-44-7660-01 1 226553750 226553750 C A PARP1 Missense_Mutation p.V804F 0.23 deleterious(0.02) probably_damaging(0.941) TCGA-44-7660-01 1 228550329 228550329 G A OBSCN Silent p.L7195L 0.16 TCGA-44-7660-01 1 230371793 230371793 G T GALNT2 Silent p.P136P 0.31 TCGA-44-7660-01 1 235944170 235944170 A T LYST Missense_Mutation p.L1737I 0.40 tolerated(0.05) possibly_damaging(0.5) TCGA-44-7660-01 1 237823330 237823330 A C RYR2 Missense_Mutation p.K2752Q 0.29 probably_damaging(0.999) TCGA-44-7660-01 1 247875476 247875476 T G OR6F1 Silent p.A194A 0.13 TCGA-44-7660-01 1 248366781 248366781 C T OR2M3 Missense_Mutation p.P138S 0.26 tolerated(0.19) benign(0.004) TCGA-44-7660-01 1 248551610 248551610 G A OR2T6 Missense_Mutation p.R234K 0.27 tolerated(0.12) benign(0.042) TCGA-44-7660-01 1 248570065 248570065 T C OR2T1 Missense_Mutation p.L257P 0.11 deleterious(0.03) possibly_damaging(0.766) TCGA-44-7660-01 1 34330167 34330167 G A HMGB4 Silent p.K125K 0.21 TCGA-44-7660-01 1 34383741 34383741 C T CSMD2 Missense_Mutation p.G252S 0.53 tolerated(0.19) benign(0.403) TCGA-44-7660-01 1 34554594 34554594 C G CSMD2 Missense_Mutation p.E90Q 0.07 deleterious(0.03) possibly_damaging(0.552) TCGA-44-7660-01 1 36886216 36886216 C - OSCP1 Frame_Shift_Del p.E274Kfs*13 0.16 TCGA-44-7660-01 1 38227456 38227456 C T EPHA10 Silent p.A157A 0.14 TCGA-44-7660-01 1 39760802 39760802 C T MACF1 Missense_Mutation p.P752S 0.04 possibly_damaging(0.462) TCGA-44-7660-01 1 39782939 39782939 G T MACF1 Missense_Mutation p.E1219D 0.09 benign(0.068) TCGA-44-7660-01 1 40124879 40124879 C A NT5C1A Missense_Mutation p.G341C 0.18 deleterious(0) probably_damaging(1) TCGA-44-7660-01 1 40627264 40627264 G T RLF Missense_Mutation p.V65L 0.08 deleterious(0.04) benign(0.239) TCGA-44-7660-01 1 42660660 42660660 C G FOXJ3 Missense_Mutation p.D279H 0.20 deleterious(0) possibly_damaging(0.866) TCGA-44-7660-01 1 44044570 44044570 C T PTPRF Missense_Mutation p.P220S 0.15 tolerated(0.19) probably_damaging(1) TCGA-44-7660-01 1 44468263 44468263 C T SLC6A9 Missense_Mutation p.R333H 0.12 deleterious(0) probably_damaging(0.993) TCGA-44-7660-01 1 46662402 46662402 C T POMGNT1 Splice_Site p.X118_splice 0.08 TCGA-44-7660-01 1 46810744 46810744 C G NSUN4 Missense_Mutation p.S122C 0.12 tolerated(0.1) benign(0.033) TCGA-44-7660-01 1 52819278 52819278 C A CC2D1B Silent p.V830V 0.10 TCGA-44-7660-01 1 53427185 53427185 G A SCP2 Missense_Mutation p.R136K 0.04 deleterious(0.04) benign(0.059) TCGA-44-7660-01 1 55470717 55470717 C A BSND Missense_Mutation p.S67Y 0.24 deleterious(0.02) probably_damaging(0.982) TCGA-44-7660-01 1 57170140 57170140 G - PRKAA2 Frame_Shift_Del p.E429Nfs*4 0.42 TCGA-44-7660-01 1 62734105 62734105 T A KANK4 Silent p.A695A 0.05 TCGA-44-7660-01 1 63894423 63894423 A G ALG6 Missense_Mutation p.S360G 0.12 tolerated(0.2) benign(0.002) TCGA-44-7660-01 1 70385473 70385473 G A LRRC7 Intron 0.28 TCGA-44-7660-01 1 70451993 70451993 G T LRRC7 Missense_Mutation p.M247I 0.27 tolerated(0.09) benign(0.005) TCGA-44-7660-01 1 70451994 70451994 G T LRRC7 Missense_Mutation p.D248Y 0.27 deleterious(0) benign(0.255) TCGA-44-7660-01 1 7309632 7309632 A T CAMTA1 Missense_Mutation p.K128N 0.07 deleterious(0) probably_damaging(0.989) TCGA-44-7660-01 1 74507111 74507111 C A LRRIQ3 Missense_Mutation p.A502S 0.29 tolerated(0.53) benign(0.018) TCGA-44-7660-01 1 74575191 74575191 C A LRRIQ3 Nonsense_Mutation p.G252* 0.12 TCGA-44-7660-01 1 76262670 76262670 G T MSH4 5'UTR 0.61 TCGA-44-7660-01 1 92327203 92327203 T A TGFBR3 Splice_Site 0.62 TCGA-44-7660-01 20 13756902 13756902 T G ESF1 Missense_Mutation p.M218L 0.11 tolerated_low_confidence(0.09) benign(0.002) TCGA-44-7660-01 20 16025282 16025282 T C MACROD2 Intron 0.06 TCGA-44-7660-01 20 19193609 19193609 G T SLC24A3 Silent p.S41S 0.65 TCGA-44-7660-01 20 20243767 20243767 C T C20orf26 Silent p.T832T 0.43 TCGA-44-7660-01 20 23545644 23545644 T - CST9L Frame_Shift_Del p.R129Gfs*4 0.31 TCGA-44-7660-01 20 31022464 31022464 G A ASXL1 Missense_Mutation p.G650D 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-44-7660-01 20 31024776 31024776 C T ASXL1 Missense_Mutation p.L1421F 0.27 tolerated(0.22) benign(0.015) TCGA-44-7660-01 20 31395789 31395789 G A DNMT3B 3'UTR 0.36 TCGA-44-7660-01 20 33859374 33859374 G A MMP24 Missense_Mutation p.D446N 0.39 tolerated(0.32) probably_damaging(0.995) TCGA-44-7660-01 20 35219922 35219922 A G TGIF2 3'UTR 0.17 TCGA-44-7660-01 20 35545172 35545172 G - SAMHD1 Frame_Shift_Del p.R339Vfs*5 0.23 TCGA-44-7660-01 20 43933051 43933051 C A MATN4 Missense_Mutation p.V154L 0.53 probably_damaging(0.954) TCGA-44-7660-01 20 44108642 44108642 A T WFDC2 Missense_Mutation p.D95V 0.35 deleterious(0) benign(0.338) TCGA-44-7660-01 20 44841810 44841810 T A CDH22 Missense_Mutation p.I286F 0.12 deleterious(0) possibly_damaging(0.711) TCGA-44-7660-01 20 5283145 5283145 G A PROKR2 Silent p.F232F 0.22 TCGA-44-7660-01 20 61942872 61942872 G A COL20A1 Missense_Mutation p.G507D 0.31 tolerated(0.18) benign(0.297) TCGA-44-7660-01 21 19165829 19165829 T A C21orf91 Missense_Mutation p.H266L 0.48 deleterious(0) benign(0.023) TCGA-44-7660-01 21 22658659 22658659 C A NCAM2 Nonsense_Mutation p.C136* 0.15 TCGA-44-7660-01 21 28315771 28315771 T A ADAMTS5 Missense_Mutation p.S445C 0.67 deleterious(0.01) probably_damaging(0.995) TCGA-44-7660-01 21 30411359 30411359 A G USP16 Missense_Mutation p.I249V 0.53 tolerated(0.89) benign(0.009) TCGA-44-7660-01 21 31692032 31692032 G T KRTAP26-1 Missense_Mutation p.L108I 0.28 tolerated(0.25) benign(0.178) TCGA-44-7660-01 21 34892683 34892683 A C GART Missense_Mutation p.C564G 0.14 deleterious(0) probably_damaging(0.976) TCGA-44-7660-01 21 46047672 46047672 C A KRTAP10-9 Missense_Mutation p.P195H 0.47 deleterious(0.01) unknown(0) TCGA-44-7660-01 22 22990065 22990065 G T GGTLC2 Missense_Mutation p.A171S 0.47 tolerated(0.48) benign(0.023) TCGA-44-7660-01 22 26176070 26176070 G A MYO18B Missense_Mutation p.V706M 0.44 deleterious(0.05) possibly_damaging(0.499) TCGA-44-7660-01 22 39428406 39428406 G T APOBEC3D 3'UTR 0.38 TCGA-44-7660-01 22 50307487 50307487 G A ALG12 5'UTR 0.22 TCGA-44-7660-01 22 50655551 50655551 C T SELO Silent p.F613F 0.11 TCGA-44-7660-01 22 50655559 50655559 C T SELO Splice_Site p.X615_splice 0.10 TCGA-44-7660-01 2 112849307 112849307 G A TMEM87B Missense_Mutation p.V351I 0.29 tolerated(0.12) probably_damaging(0.932) TCGA-44-7660-01 2 149526787 149526787 G T EPC2 Missense_Mutation p.R403L 0.63 deleterious(0) benign(0.416) TCGA-44-7660-01 2 152426637 152426637 G A NEB Silent p.N5796N 0.19 TCGA-44-7660-01 2 152426863 152426863 A T NEB Missense_Mutation p.V5721E 0.31 probably_damaging(0.991) TCGA-44-7660-01 2 152518738 152518738 G T NEB Missense_Mutation p.R1961S 0.41 probably_damaging(0.999) TCGA-44-7660-01 2 15607504 15607504 G C NBAS Missense_Mutation p.C682W 0.05 deleterious(0) probably_damaging(0.99) TCGA-44-7660-01 2 163003967 163003967 G T GCG Missense_Mutation p.D50E 0.17 tolerated(0.25) benign(0.002) TCGA-44-7660-01 2 167284299 167284299 A T SCN7A Missense_Mutation p.L951Q 0.48 deleterious(0) probably_damaging(0.999) TCGA-44-7660-01 2 168107994 168107994 A G XIRP2 Missense_Mutation p.I3364M 0.45 benign(0.046) TCGA-44-7660-01 2 179446923 179446923 C A TTN Missense_Mutation p.R22058L 0.44 TCGA-44-7660-01 2 179458844 179458844 C A TTN Missense_Mutation p.D19426Y 0.40 TCGA-44-7660-01 2 185802398 185802398 A T ZNF804A Missense_Mutation p.N759Y 0.18 deleterious(0) probably_damaging(0.99) TCGA-44-7660-01 2 186692902 186692902 G T FSIP2 Missense_Mutation p.K6920N 0.11 benign(0.003) TCGA-44-7660-01 2 189916084 189916084 G A COL5A2 Missense_Mutation p.P965S 0.20 unknown(0) TCGA-44-7660-01 2 196786861 196786861 C G DNAH7 Missense_Mutation p.G1296R 0.48 deleterious(0) probably_damaging(0.986) TCGA-44-7660-01 2 198352698 198352698 C T HSPD1 Missense_Mutation p.V485I 0.16 tolerated(0.11) benign(0.039) TCGA-44-7660-01 2 198570480 198570480 C G MARS2 Silent p.V117V 0.10 TCGA-44-7660-01 2 209025464 209025464 T G CRYGA 3'UTR 0.20 TCGA-44-7660-01 2 220379743 220379743 G A ASIC4 Silent p.V226V 0.43 TCGA-44-7660-01 2 228882629 228882629 T C SPHKAP Missense_Mutation p.R981G 0.08 deleterious(0) probably_damaging(0.95) TCGA-44-7660-01 2 63175836 63175836 C T EHBP1 Nonsense_Mutation p.Q654* 0.06 TCGA-44-7660-01 2 71185490 71185490 G T ATP6V1B1 Missense_Mutation p.A101S 0.38 tolerated(0.29) benign(0.01) TCGA-44-7660-01 2 71590316 71590316 G A ZNF638 Silent p.S471S 0.23 TCGA-44-7660-01 2 80530220 80530220 C A LRRTM1 Missense_Mutation p.R242M 0.26 deleterious(0.01) possibly_damaging(0.628) TCGA-44-7660-01 2 86509304 86509304 T C REEP1 Missense_Mutation p.I39V 0.21 tolerated(1) benign(0.006) TCGA-44-7660-01 2 89976255 89976255 C A IGKV2D-30 Silent p.S42S 0.32 TCGA-44-7660-01 2 8998748 8998748 G A MBOAT2 3'UTR 0.17 TCGA-44-7660-01 2 90044277 90044277 C A IGKV2D-24 Silent p.G66G 0.47 TCGA-44-7660-01 2 99778833 99778833 A G LIPT1 Missense_Mutation p.N138S 0.38 deleterious(0.02) benign(0.243) TCGA-44-7660-01 3 100387877 100387877 C A GPR128 Nonsense_Mutation p.Y688* 0.35 TCGA-44-7660-01 3 102176646 102176646 G T ZPLD1 Silent p.V193V 0.16 TCGA-44-7660-01 3 108175615 108175615 T C MYH15 Silent p.Q732Q 0.10 TCGA-44-7660-01 3 119886046 119886046 G A GPR156 Missense_Mutation p.R760W 0.13 deleterious(0) probably_damaging(0.999) TCGA-44-7660-01 3 148563413 148563413 G - CPB1 Frame_Shift_Del 0.36 TCGA-44-7660-01 3 151164972 151164972 C A IGSF10 Missense_Mutation p.V933F 0.22 tolerated(0.36) benign(0.001) TCGA-44-7660-01 3 154146579 154146579 C A GPR149 Nonsense_Mutation p.G276* 0.29 TCGA-44-7660-01 3 157823740 157823740 T C SHOX2 Missense_Mutation p.Y25C 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-7660-01 3 170198079 170198079 C A SLC7A14 Silent p.V664V 0.18 TCGA-44-7660-01 3 183017802 183017802 C G MCF2L2 Missense_Mutation p.Q432H 0.07 tolerated(0.55) benign(0.062) TCGA-44-7660-01 3 185369906 185369906 G A IGF2BP2 Silent p.T479T 0.15 TCGA-44-7660-01 3 185906032 185906032 T A DGKG Missense_Mutation p.K685M 0.03 deleterious(0.03) probably_damaging(0.98) TCGA-44-7660-01 3 186760866 186760866 C G ST6GAL1 Silent p.S125S 0.07 TCGA-44-7660-01 3 23250261 23250261 G A UBE2E2 Missense_Mutation p.R24H 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.522) TCGA-44-7660-01 3 38317787 38317787 T A SLC22A13 Missense_Mutation p.V416E 0.07 deleterious(0.04) benign(0.182) TCGA-44-7660-01 3 39230333 39230333 G T XIRP1 Missense_Mutation p.R202S 0.73 tolerated(0.31) benign(0.07) TCGA-44-7660-01 3 49693067 49693067 C T BSN Silent p.G2026G 0.05 TCGA-44-7660-01 3 64085326 64085326 C G PRICKLE2 Missense_Mutation p.D646H 0.04 deleterious(0.02) benign(0.245) TCGA-44-7660-01 3 65367574 65367574 C T MAGI1 Silent p.V893V 0.44 TCGA-44-7660-01 3 93754267 93754267 G T ARL13B Missense_Mutation p.C158F 0.36 deleterious(0) probably_damaging(0.95) TCGA-44-7660-01 3 97888076 97888076 A T OR5H15 Missense_Mutation p.Y178F 0.25 tolerated(0.29) benign(0.209) TCGA-44-7660-01 3 9908696 9908696 G T CIDEC 3'Flank 0.43 TCGA-44-7660-01 4 103189159 103189159 C A SLC39A8 Missense_Mutation p.M306I 0.64 deleterious(0) probably_damaging(0.988) TCGA-44-7660-01 4 109670611 109670611 T A ETNPPL Missense_Mutation p.H237L 0.51 deleterious(0.03) possibly_damaging(0.598) TCGA-44-7660-01 4 120219842 120219842 T G C4orf3 3'UTR 0.62 TCGA-44-7660-01 4 121958648 121958648 T C NDNF Missense_Mutation p.K160E 0.53 deleterious(0.03) probably_damaging(0.952) TCGA-44-7660-01 4 144438520 144438520 G C SMARCA5 Missense_Mutation p.D64H 0.18 tolerated(0.1) possibly_damaging(0.596) TCGA-44-7660-01 4 166403509 166403509 G C CPE Missense_Mutation p.S263T 0.27 tolerated(0.49) benign(0.019) TCGA-44-7660-01 4 175898232 175898232 C A ADAM29 Missense_Mutation p.T519N 0.10 tolerated(0.53) benign(0.01) TCGA-44-7660-01 4 187629040 187629040 T C FAT1 Missense_Mutation p.T648A 0.53 possibly_damaging(0.521) TCGA-44-7660-01 4 190947540 190947540 T G FRG2 Silent p.A110A 0.54 TCGA-44-7660-01 4 25314406 25314406 G A ZCCHC4 5'Flank 0.57 TCGA-44-7660-01 4 52944931 52944931 A C SPATA18 Silent p.R351R 0.59 TCGA-44-7660-01 4 758808 758808 G C PCGF3 Missense_Mutation p.D213H 0.09 deleterious(0) probably_damaging(0.998) TCGA-44-7660-01 4 90856470 90856470 T C MMRN1 Missense_Mutation p.S547P 0.15 tolerated(0.24) possibly_damaging(0.888) TCGA-44-7660-01 4 946154 946154 G A TMEM175 Splice_Site p.X127_splice 0.06 TCGA-44-7660-01 5 10415612 10415612 G T MARCH6 Missense_Mutation p.R660L 0.39 deleterious(0) probably_damaging(0.995) TCGA-44-7660-01 5 112312447 112312447 A G DCP2 5'UTR 0.59 TCGA-44-7660-01 5 11411696 11411696 G A CTNND2 Silent p.L131L 0.42 TCGA-44-7660-01 5 140553818 140553818 C T PCDHB7 Silent p.L468L 0.53 TCGA-44-7660-01 5 140558379 140558379 A G PCDHB8 Missense_Mutation p.D255G 0.09 deleterious_low_confidence(0) benign(0.184) TCGA-44-7660-01 5 140742083 140742083 G T PCDHGB2 Missense_Mutation p.G794V 0.62 tolerated(0.1) benign(0.04) TCGA-44-7660-01 5 14681619 14681619 G T FAM105B Missense_Mutation p.R124L 0.36 deleterious(0) probably_damaging(0.999) TCGA-44-7660-01 5 155935673 155935673 C T SGCD Silent p.F85F 0.58 TCGA-44-7660-01 5 156769922 156769922 A G FNDC9 Missense_Mutation p.L208S 0.58 tolerated(0.91) benign(0.004) TCGA-44-7660-01 5 176306761 176306761 C A UNC5A Silent p.A801A 0.64 TCGA-44-7660-01 5 1816029 1816029 A T NDUFS6 Nonstop_Mutation p.*125Lext*44 0.21 TCGA-44-7660-01 5 33624377 33624377 C G ADAMTS12 Missense_Mutation p.C701S 0.40 deleterious(0) probably_damaging(0.999) TCGA-44-7660-01 5 35776363 35776363 A T SPEF2 Silent p.I1361I 0.37 TCGA-44-7660-01 5 35779279 35779279 T G SPEF2 Missense_Mutation p.N1426K 0.20 tolerated(0.22) benign(0.186) TCGA-44-7660-01 5 41065491 41065491 G C MROH2B Missense_Mutation p.I101M 0.40 tolerated(0.09) probably_damaging(0.942) TCGA-44-7660-01 5 45645392 45645392 G T HCN1 Nonsense_Mutation p.Y248* 0.31 TCGA-44-7660-01 5 61847062 61847062 G A IPO11 Missense_Mutation p.V827M 0.11 deleterious(0.01) possibly_damaging(0.495) TCGA-44-7660-01 5 74656147 74656147 T C HMGCR Missense_Mutation p.C883R 0.70 deleterious_low_confidence(0.02) benign(0.001) TCGA-44-7660-01 5 77511942 77511942 C A AP3B1 Missense_Mutation p.Q241H 0.49 deleterious(0.01) possibly_damaging(0.906) TCGA-44-7660-01 6 102483225 102483225 A C GRIK2 Missense_Mutation p.I699L 0.40 tolerated(0.06) benign(0.163) TCGA-44-7660-01 6 102516386 102516386 A C GRIK2 Nonstop_Mutation p.*909Yext*34 0.22 TCGA-44-7660-01 6 10587045 10587045 G A GCNT2 Intron 0.27 TCGA-44-7660-01 6 106992709 106992709 G T AIM1 Missense_Mutation p.G1330V 0.47 deleterious(0) probably_damaging(0.992) TCGA-44-7660-01 6 109471323 109471323 A G CEP57L1 Missense_Mutation p.I115V 0.32 tolerated(0.5) possibly_damaging(0.883) TCGA-44-7660-01 6 111698964 111698964 T C REV3L Missense_Mutation p.S513G 0.49 tolerated(0.21) benign(0.097) TCGA-44-7660-01 6 112496574 112496574 C G LAMA4 Missense_Mutation p.R433P 0.27 deleterious(0) probably_damaging(0.954) TCGA-44-7660-01 6 123116820 123116820 A T SMPDL3A Splice_Site p.X38_splice 0.21 TCGA-44-7660-01 6 123957920 123957920 T C TRDN Translation_Start_Site p.M1? 0.48 deleterious_low_confidence(0) unknown(0) TCGA-44-7660-01 6 150289860 150289860 A G ULBP1 Missense_Mutation p.N68S 0.13 tolerated(1) benign(0.086) TCGA-44-7660-01 6 150385775 150385775 T G ULBP3 Missense_Mutation p.I235L 0.46 tolerated(0.13) benign(0.031) TCGA-44-7660-01 6 155141314 155141314 G T SCAF8 Missense_Mutation p.A547S 0.32 deleterious(0.04) probably_damaging(0.998) TCGA-44-7660-01 6 160553392 160553392 G C SLC22A1 Missense_Mutation p.G215A 0.19 tolerated(0.15) benign(0.209) TCGA-44-7660-01 6 161160114 161160114 C G PLG Nonsense_Mutation p.S631* 0.24 TCGA-44-7660-01 6 26413844 26413844 C G BTN3A1 Missense_Mutation p.S489C 0.39 deleterious(0.01) probably_damaging(0.975) TCGA-44-7660-01 6 29323494 29323494 G C OR5V1 Missense_Mutation p.T160R 0.08 deleterious(0) probably_damaging(1) TCGA-44-7660-01 6 30071450 30071450 C T TRIM31 Missense_Mutation p.D381N 0.06 tolerated_low_confidence(0.4) benign(0) TCGA-44-7660-01 6 30166898 30166898 G C TRIM26 5'UTR 0.14 TCGA-44-7660-01 6 31939756 31939756 C G STK19 5'UTR 0.09 TCGA-44-7660-01 6 33144983 33144983 C A COL11A2 Missense_Mutation p.G578V 0.18 probably_damaging(0.979) TCGA-44-7660-01 6 33165612 33165612 C T RXRB Silent p.V249V 0.25 TCGA-44-7660-01 6 42615858 42615858 G A UBR2 Silent p.E804E 0.11 TCGA-44-7660-01 6 43154012 43154012 G A CUL9 Missense_Mutation p.R357K 0.21 tolerated(1) benign(0.003) TCGA-44-7660-01 6 43167690 43167690 C T CUL9 Silent p.F1060F 0.49 TCGA-44-7660-01 6 43639467 43639467 T A MRPS18A 3'UTR 0.23 TCGA-44-7660-01 6 46658843 46658843 C G TDRD6 Missense_Mutation p.T993R 0.38 deleterious(0) probably_damaging(1) TCGA-44-7660-01 6 50696669 50696669 G T TFAP2D Missense_Mutation p.E233D 0.47 deleterious(0) probably_damaging(0.998) TCGA-44-7660-01 6 69348701 69348701 G T BAI3 Missense_Mutation p.S45I 0.41 tolerated(0.1) benign(0.082) TCGA-44-7660-01 6 74519732 74519732 A T CD109 Silent p.S1127S 0.33 TCGA-44-7660-01 6 79650459 79650459 C A PHIP Missense_Mutation p.R1806L 0.12 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-44-7660-01 6 89895127 89895127 C T GABRR1 Missense_Mutation p.G233D 0.38 deleterious(0.02) probably_damaging(1) TCGA-44-7660-01 6 90354758 90354758 A C MDN1 Silent p.V5526V 0.04 TCGA-44-7660-01 7 100411612 100411612 C G EPHB4 Silent p.L540L 0.20 TCGA-44-7660-01 7 119915304 119915304 A G KCND2 Silent p.T206T 0.08 TCGA-44-7660-01 7 129099406 129099406 G T STRIP2 Silent p.V463V 0.09 TCGA-44-7660-01 7 139060838 139060838 G T C7orf55-LUC7L2 Missense_Mutation p.S31I 0.11 deleterious(0.02) possibly_damaging(0.842) TCGA-44-7660-01 7 142032451 142032451 G T TRBV7-1 Nonsense_Mutation p.G91* 0.38 TCGA-44-7660-01 7 143085736 143085736 C T ZYX Silent p.C433C 0.14 TCGA-44-7660-01 7 143771818 143771818 G T OR2A25 Missense_Mutation p.G169V 0.37 deleterious(0.01) benign(0.033) TCGA-44-7660-01 7 146471385 146471385 C A CNTNAP2 Silent p.V40V 0.26 TCGA-44-7660-01 7 150269947 150269947 C A GIMAP4 Silent p.I263I 0.27 TCGA-44-7660-01 7 151818734 151818734 C G GALNT11 Missense_Mutation p.S600C 0.06 deleterious(0.05) possibly_damaging(0.676) TCGA-44-7660-01 7 15427033 15427033 C T AGMO Missense_Mutation p.E319K 0.25 tolerated(0.53) benign(0.002) TCGA-44-7660-01 7 2962845 2962845 C G CARD11 Missense_Mutation p.R688P 0.31 tolerated(0.1) benign(0.175) TCGA-44-7660-01 7 32526822 32526822 T A LSM5 3'UTR 0.50 TCGA-44-7660-01 7 36338681 36338681 G T EEPD1 Missense_Mutation p.G526W 0.45 deleterious(0) probably_damaging(1) TCGA-44-7660-01 7 38785205 38785205 C T VPS41 Silent p.E645E 0.42 TCGA-44-7660-01 7 38805189 38805189 T C VPS41 Silent p.G440G 0.06 TCGA-44-7660-01 7 43351509 43351509 G A HECW1 Missense_Mutation p.D59N 0.09 tolerated_low_confidence(0.22) benign(0.001) TCGA-44-7660-01 7 4949550 4949550 C G MMD2 Missense_Mutation p.V191L 0.40 tolerated(0.24) benign(0.047) TCGA-44-7660-01 7 5112803 5112803 C T RBAK-RBAKDN 3'UTR 0.34 TCGA-44-7660-01 7 57528541 57528542 - A ZNF716 Frame_Shift_Ins p.C128Mfs*3 0.42 TCGA-44-7660-01 7 590208 590208 C A PRKAR1B Silent p.R335R 0.50 TCGA-44-7660-01 7 62752583 62752583 C - ZNF733P RNA 0.09 TCGA-44-7660-01 7 64166760 64166760 C G ZNF107 Missense_Mutation p.F26L 0.20 tolerated(0.13) benign(0.077) TCGA-44-7660-01 7 72754751 72754751 C A FKBP6 Silent p.R234R 0.36 TCGA-44-7660-01 7 7680006 7680006 C G RPA3 Missense_Mutation p.G15A 0.31 tolerated(0.19) benign(0.003) TCGA-44-7660-01 7 82453617 82453617 T C PCLO Missense_Mutation p.Q4844R 0.44 unknown(0) TCGA-44-7660-01 7 93055685 93055685 G T CALCR Missense_Mutation p.Q504K 0.33 tolerated(0.11) benign(0.014) TCGA-44-7660-01 7 99769770 99769770 C A GPC2 Silent p.G321G 0.18 TCGA-44-7660-01 8 103842161 103842161 T C AZIN1 Missense_Mutation p.E303G 0.54 tolerated(0.05) benign(0) TCGA-44-7660-01 8 10469381 10469381 C A RP1L1 Missense_Mutation p.A743S 0.61 benign(0.153) TCGA-44-7660-01 8 105393464 105393464 C A DPYS Missense_Mutation p.D508Y 0.56 tolerated(0.08) benign(0.34) TCGA-44-7660-01 8 107782048 107782048 A T ABRA Missense_Mutation p.V124E 0.06 deleterious(0) possibly_damaging(0.553) TCGA-44-7660-01 8 116616446 116616446 G T TRPS1 Missense_Mutation p.L584I 0.22 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-44-7660-01 8 120613649 120613649 G T ENPP2 Missense_Mutation p.P296Q 0.54 deleterious(0) probably_damaging(0.972) TCGA-44-7660-01 8 12957341 12957341 A T DLC1 Silent p.S835S 0.47 TCGA-44-7660-01 8 142441152 142441152 C A PTP4A3 3'UTR 0.12 TCGA-44-7660-01 8 142441153 142441153 C T PTP4A3 3'UTR 0.13 TCGA-44-7660-01 8 144992757 144992757 C A PLEC Silent p.V3881V 0.75 TCGA-44-7660-01 8 144996895 144996895 T A PLEC Missense_Mutation p.E2538V 0.71 probably_damaging(0.997) TCGA-44-7660-01 8 1497595 1497595 T A DLGAP2 Missense_Mutation p.C246S 0.06 tolerated(0.44) benign(0.08) TCGA-44-7660-01 8 37672447 37672447 C T GPR124 Silent p.R100R 0.51 TCGA-44-7660-01 8 57079654 57079654 A G PLAG1 Silent p.Y217Y 0.09 TCGA-44-7660-01 8 77763963 77763963 C A ZFHX4 Nonsense_Mutation p.Y1602* 0.43 TCGA-44-7660-01 8 82572881 82572881 T A IMPA1 Silent p.A255A 0.06 TCGA-44-7660-01 9 116811415 116811415 C G ZNF618 Missense_Mutation p.I518M 0.51 tolerated(0.07) probably_damaging(0.986) TCGA-44-7660-01 9 116930943 116930943 A T COL27A1 Missense_Mutation p.T370S 0.58 unknown(0) TCGA-44-7660-01 9 127933458 127933458 C A PPP6C Missense_Mutation p.R63L 0.55 deleterious(0.03) benign(0.042) TCGA-44-7660-01 9 129455846 129455846 T C LMX1B Missense_Mutation p.V262A 0.07 deleterious(0) probably_damaging(0.97) TCGA-44-7660-01 9 129458722 129458732 GCCTCCTGAGA - LMX1B Missense_Mutation 0.28 TCGA-44-7660-01 9 134165461 134165461 A T PPAPDC3 Missense_Mutation p.N26I 0.73 deleterious(0.02) probably_damaging(0.999) TCGA-44-7660-01 9 2054631 2054631 C A SMARCA2 Missense_Mutation p.L361M 0.30 possibly_damaging(0.665) TCGA-44-7660-01 9 27062638 27062638 G T IFT74 Missense_Mutation p.E569D 0.33 deleterious(0.01) probably_damaging(0.988) TCGA-44-7660-01 9 33472115 33472115 C A NOL6 Nonsense_Mutation p.E89* 0.31 TCGA-44-7660-01 9 35748807 35748807 C A GBA2 5'UTR 0.37 TCGA-44-7660-01 9 37732366 37732366 C A FRMPD1 Silent p.L308L 0.53 TCGA-44-7660-01 9 6990504 6990504 A T KDM4C Missense_Mutation p.Q589L 0.29 deleterious(0.04) benign(0.004) TCGA-44-7660-01 9 82333861 82333861 G C TLE4 Missense_Mutation p.S522T 0.25 tolerated(0.87) benign(0) TCGA-44-7660-01 X 107434703 107434703 G T COL4A6 Missense_Mutation p.P415Q 0.70 unknown(0) TCGA-44-7660-01 X 123190030 123190030 G C STAG2 Missense_Mutation p.V417L 0.23 deleterious(0) probably_damaging(1) TCGA-44-7660-01 X 123870989 123870989 C T TENM1 Silent p.P198P 0.07 TCGA-44-7660-01 X 128902516 128902516 G C XPNPEP2 3'UTR 0.64 TCGA-44-7660-01 X 13588024 13588024 G T EGFL6 Missense_Mutation p.W15L 0.55 tolerated(0.65) unknown(0) TCGA-44-7660-01 X 153670128 153670128 C G GDI1 Silent p.V326V 0.54 TCGA-44-7660-01 X 155119183 155119183 T A VAMP7 Missense_Mutation p.H18Q 0.09 deleterious(0.01) benign(0.112) TCGA-44-7660-01 X 23897136 23897136 C G APOO Missense_Mutation p.V45L 0.71 tolerated(0.09) benign(0.394) TCGA-44-7660-01 X 30268593 30268593 T C MAGEB1 5'UTR 0.60 TCGA-44-7660-01 X 38664769 38664769 T A MID1IP1 3'UTR 0.69 TCGA-44-7660-01 X 46913776 46913776 G A JADE3 Missense_Mutation p.A397T 0.24 deleterious(0.04) benign(0.014) TCGA-44-7660-01 X 48650830 48650830 G A GATA1 Silent p.K233K 0.11 TCGA-44-7660-01 X 54784369 54784369 G T ITIH6 Missense_Mutation p.S713Y 0.72 tolerated(0.1) benign(0.125) TCGA-44-7660-01 X 71425455 71425455 T G ERCC6L Silent p.S1054S 0.72 TCGA-44-7660-01 X 73043907 73043907 C G XIST RNA 0.86 TCGA-44-7660-01 X 91133547 91133547 C G PCDH11X Missense_Mutation p.L770V 0.08 tolerated(0.51) benign(0.192) TCGA-44-7661-01 10 105173725 105173725 C G PDCD11 Silent p.L396L 0.06 TCGA-44-7661-01 10 11505354 11505354 C G USP6NL Missense_Mutation p.V542L 0.11 tolerated(0.25) benign(0.016) TCGA-44-7661-01 10 117884770 117884770 C T GFRA1 Silent p.L244L 0.13 TCGA-44-7661-01 10 121212764 121212764 G A GRK5 Silent p.L550L 0.10 TCGA-44-7661-01 10 13234496 13234496 C T MCM10 Missense_Mutation p.S559L 0.13 tolerated(0.1) probably_damaging(0.983) TCGA-44-7661-01 10 16975228 16975228 C A CUBN Silent p.P1994P 0.19 TCGA-44-7661-01 10 24835122 24835122 G - KIAA1217 Frame_Shift_Del p.A1901Pfs*6 0.10 TCGA-44-7661-01 10 26939537 26939537 C A LINC00202-2 RNA 0.18 TCGA-44-7661-01 10 27326211 27326211 T C ANKRD26 Silent p.R867R 0.13 TCGA-44-7661-01 10 27508745 27508745 C A ACBD5 Missense_Mutation p.V178F 0.13 deleterious(0) possibly_damaging(0.862) TCGA-44-7661-01 10 48370461 48370461 G A ZNF488 5'UTR 0.15 TCGA-44-7661-01 10 70700879 70700879 G C DDX50 Missense_Mutation p.E607Q 0.12 tolerated(0.55) possibly_damaging(0.449) TCGA-44-7661-01 10 81154082 81154082 T A ZCCHC24 Missense_Mutation p.M188L 0.11 deleterious(0.02) possibly_damaging(0.711) TCGA-44-7661-01 10 89692835 89692835 G A PTEN Missense_Mutation p.D107N 0.11 tolerated(0.06) benign(0.445) TCGA-44-7661-01 10 98127859 98127859 G A TLL2 Missense_Mutation p.H1012Y 0.22 deleterious_low_confidence(0.02) benign(0.214) TCGA-44-7661-01 10 98778853 98778853 G T SLIT1 Missense_Mutation p.L920M 0.22 tolerated(0.13) benign(0.284) TCGA-44-7661-01 11 101829004 101829004 G A KIAA1377 Missense_Mutation p.M204I 0.09 tolerated(0.12) benign(0) TCGA-44-7661-01 11 108547831 108547831 G A DDX10 Missense_Mutation p.R133H 0.17 tolerated(0.17) probably_damaging(0.996) TCGA-44-7661-01 11 111431089 111431089 G A LAYN Missense_Mutation p.G352E 0.07 deleterious(0.01) probably_damaging(0.978) TCGA-44-7661-01 11 111724370 111724370 A G ALG9 Splice_Site p.X92_splice 0.24 TCGA-44-7661-01 11 113102471 113102471 C T NCAM1 Silent p.S447S 0.21 TCGA-44-7661-01 11 118403871 118403871 G T TMEM25 Missense_Mutation p.V208L 0.15 tolerated(0.54) benign(0.062) TCGA-44-7661-01 11 123814338 123814338 C G OR6T1 Missense_Mutation p.E70Q 0.21 deleterious(0) probably_damaging(0.992) TCGA-44-7661-01 11 125475572 125475572 C G STT3A Missense_Mutation p.A186G 0.15 deleterious(0.02) benign(0.042) TCGA-44-7661-01 11 17496452 17496452 C T ABCC8 Missense_Mutation p.E91K 0.07 deleterious(0) probably_damaging(0.996) TCGA-44-7661-01 11 17565906 17565906 C G USH1C 5'Flank 0.14 TCGA-44-7661-01 11 1861655 1861655 C A TNNI2 Missense_Mutation p.A13D 0.28 deleterious(0) benign(0.086) TCGA-44-7661-01 11 45827767 45827767 G T SLC35C1 Missense_Mutation p.G139C 0.21 deleterious(0) probably_damaging(0.967) TCGA-44-7661-01 11 48158681 48158681 C T PTPRJ Missense_Mutation p.S667F 0.07 tolerated(0.14) benign(0.049) TCGA-44-7661-01 11 5021050 5021050 G T OR51L1 Missense_Mutation p.D280Y 0.15 tolerated(0.87) probably_damaging(0.984) TCGA-44-7661-01 11 55861085 55861085 T A OR8I2 Missense_Mutation p.M101K 0.15 deleterious(0) benign(0.152) TCGA-44-7661-01 11 5602780 5602780 C A OR52B6 Missense_Mutation p.S225Y 0.13 tolerated(0.08) possibly_damaging(0.543) TCGA-44-7661-01 11 5841709 5841709 C G OR52N2 Missense_Mutation p.I48M 0.05 tolerated(0.09) benign(0.015) TCGA-44-7661-01 11 62300719 62300719 C G AHNAK Missense_Mutation p.K390N 0.12 probably_damaging(0.991) TCGA-44-7661-01 11 62520142 62520142 G A ZBTB3 Missense_Mutation p.S382F 0.07 deleterious(0.04) possibly_damaging(0.474) TCGA-44-7661-01 11 62520804 62520804 G A ZBTB3 Silent p.I161I 0.07 TCGA-44-7661-01 11 62782420 62782420 G T SLC22A8 Nonsense_Mutation p.S4* 0.23 TCGA-44-7661-01 11 70013415 70013415 G T ANO1 Missense_Mutation p.V707L 0.22 tolerated(0.65) benign(0.001) TCGA-44-7661-01 11 70331742 70331742 C T SHANK2 Missense_Mutation p.M1553I 0.07 tolerated(0.25) benign(0.019) TCGA-44-7661-01 11 7071070 7071070 G T NLRP14 Splice_Site p.X764_splice 0.11 TCGA-44-7661-01 11 7982427 7982427 G C NLRP10 Silent p.L244L 0.14 TCGA-44-7661-01 11 87020658 87020658 A G TMEM135 Missense_Mutation p.N294D 0.17 deleterious(0.03) possibly_damaging(0.545) TCGA-44-7661-01 11 88386449 88386449 C T GRM5 Missense_Mutation p.R345Q 0.12 tolerated(0.09) benign(0.008) TCGA-44-7661-01 11 93469410 93469410 C T TAF1D Missense_Mutation p.E252K 0.08 tolerated_low_confidence(0.15) benign(0.306) TCGA-44-7661-01 12 100727948 100727948 A T SCYL2 Missense_Mutation p.N589I 0.18 deleterious(0.04) benign(0.013) TCGA-44-7661-01 12 109046107 109046107 C G CORO1C Missense_Mutation p.Q314H 0.09 deleterious(0) probably_damaging(0.997) TCGA-44-7661-01 12 117710192 117710192 C A NOS1 Nonsense_Mutation p.E613* 0.15 TCGA-44-7661-01 12 124229215 124229215 C G ATP6V0A2 Silent p.L466L 0.09 TCGA-44-7661-01 12 125626718 125626718 C G AACS Missense_Mutation p.F654L 0.15 tolerated(1) benign(0.005) TCGA-44-7661-01 12 14778703 14778703 A T GUCY2C Missense_Mutation p.M799K 0.19 deleterious(0) benign(0.423) TCGA-44-7661-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.36 deleterious(0) possibly_damaging(0.479) TCGA-44-7661-01 12 27908252 27908252 G A MRPS35 Missense_Mutation p.E281K 0.06 tolerated(0.05) benign(0.342) TCGA-44-7661-01 12 53005044 53005044 C G KRT73 Missense_Mutation p.E352Q 0.07 deleterious(0.01) benign(0.391) TCGA-44-7661-01 12 53823984 53823984 C T AMHR2 Missense_Mutation p.P448L 0.12 deleterious(0.02) possibly_damaging(0.482) TCGA-44-7661-01 12 57587421 57587421 A G LRP1 Missense_Mutation p.N2586S 0.17 benign(0.422) TCGA-44-7661-01 12 58125342 58125342 T A AGAP2 Missense_Mutation p.K679N 0.16 deleterious(0) probably_damaging(0.996) TCGA-44-7661-01 12 6787405 6787405 G A ZNF384 Missense_Mutation p.R192W 0.20 deleterious(0.03) benign(0.026) TCGA-44-7661-01 12 7076663 7076663 C T PHB2 Intron 0.10 TCGA-44-7661-01 12 78443841 78443841 G A NAV3 Missense_Mutation p.E698K 0.16 deleterious(0) probably_damaging(0.998) TCGA-44-7661-01 12 85446009 85446009 G C LRRIQ1 Missense_Mutation p.E245Q 0.05 deleterious(0.01) probably_damaging(0.981) TCGA-44-7661-01 13 24471069 24471069 T C C1QTNF9B Silent p.S19S 0.12 TCGA-44-7661-01 13 43788123 43788123 C A ENOX1 3'UTR 0.10 TCGA-44-7661-01 13 43935495 43935495 G T ENOX1 Missense_Mutation p.P101H 0.12 deleterious(0.01) possibly_damaging(0.754) TCGA-44-7661-01 13 46917607 46917607 C G KIAA0226L Missense_Mutation p.Q634H 0.12 tolerated(0.11) benign(0.16) TCGA-44-7661-01 13 53602981 53602981 G T OLFM4 Missense_Mutation p.G4C 0.14 deleterious_low_confidence(0) unknown(0) TCGA-44-7661-01 13 70456537 70456537 C G KLHL1 Missense_Mutation p.V369L 0.07 deleterious(0) probably_damaging(0.941) TCGA-44-7661-01 13 78477331 78477332 - T EDNRB Frame_Shift_Ins p.I344Nfs*46 0.20 TCGA-44-7661-01 13 84455257 84455257 A T SLITRK1 Missense_Mutation p.L129Q 0.29 deleterious(0) probably_damaging(0.998) TCGA-44-7661-01 13 88328754 88328754 C T SLITRK5 Missense_Mutation p.P371S 0.07 deleterious(0.02) benign(0.254) TCGA-44-7661-01 14 105406028 105406028 C T AHNAK2 Missense_Mutation p.D5254N 0.07 benign(0.33) TCGA-44-7661-01 14 105406952 105406952 G T AHNAK2 Missense_Mutation p.H4946N 0.26 benign(0.393) TCGA-44-7661-01 14 106054696 106054696 G T IGHA2 Missense_Mutation p.L13I 0.09 deleterious(0.04) benign(0.079) TCGA-44-7661-01 14 20404272 20404272 G T OR4K1 Missense_Mutation p.W149C 0.12 deleterious(0) probably_damaging(1) TCGA-44-7661-01 14 20502726 20502726 G C OR4K13 Missense_Mutation p.S64R 0.18 deleterious(0.03) benign(0.002) TCGA-44-7661-01 14 22111117 22111117 A C TRAV1-2 5'UTR 0.14 TCGA-44-7661-01 14 23885457 23885457 G T MYH7 Missense_Mutation p.A1570E 0.11 tolerated(0.06) possibly_damaging(0.827) TCGA-44-7661-01 14 24897996 24897996 C T CBLN3 Missense_Mutation p.G89S 0.22 tolerated(1) benign(0) TCGA-44-7661-01 14 34243708 34243708 G T NPAS3 Missense_Mutation p.D340Y 0.10 deleterious(0.01) probably_damaging(0.99) TCGA-44-7661-01 14 42356141 42356141 C G LRFN5 Missense_Mutation p.H105D 0.14 deleterious(0) probably_damaging(1) TCGA-44-7661-01 14 45605177 45605177 C A FANCM 5'UTR 0.18 TCGA-44-7661-01 14 50247032 50247032 A T KLHDC2 Missense_Mutation p.Q292L 0.12 tolerated(0.23) benign(0.412) TCGA-44-7661-01 14 79181127 79181127 G A NRXN3 Silent p.T190T 0.17 TCGA-44-7661-01 14 79432636 79432636 G T NRXN3 Missense_Mutation p.Q515H 0.12 tolerated(0.05) possibly_damaging(0.718) TCGA-44-7661-01 14 94912800 94912800 G T SERPINA11 Missense_Mutation p.T262N 0.11 tolerated(0.57) probably_damaging(0.993) TCGA-44-7661-01 15 25330540 25330540 G C SNORD116-18 RNA 0.05 TCGA-44-7661-01 15 25438424 25438424 G T SNORD115-11 3'Flank 0.22 TCGA-44-7661-01 15 25463883 25463883 C A SNORD115-28 5'Flank 0.09 TCGA-44-7661-01 15 42160769 42160769 C A SPTBN5 Missense_Mutation p.V1962L 0.15 possibly_damaging(0.563) TCGA-44-7661-01 15 65110486 65110486 C A PIF1 Missense_Mutation p.V500L 0.20 deleterious(0.03) benign(0.032) TCGA-44-7661-01 15 78777227 78777227 C T IREB2 Missense_Mutation p.T513I 0.13 deleterious(0) probably_damaging(1) TCGA-44-7661-01 15 83226530 83226530 C G CPEB1 Missense_Mutation p.D196H 0.08 deleterious(0) probably_damaging(1) TCGA-44-7661-01 15 84581868 84581868 C T ADAMTSL3 Silent p.A575A 0.09 TCGA-44-7661-01 16 1891847 1891847 T G MEIOB Missense_Mutation p.E336D 0.17 tolerated(0.64) benign(0.001) TCGA-44-7661-01 16 20838515 20838515 G A AC004381.6 Silent p.L319L 0.07 TCGA-44-7661-01 16 24166071 24166071 G A PRKCB Missense_Mutation p.V378M 0.13 tolerated(0.08) probably_damaging(0.939) TCGA-44-7661-01 16 27761500 27761500 C G KIAA0556 Missense_Mutation p.I1073M 0.05 deleterious(0.01) probably_damaging(0.988) TCGA-44-7661-01 16 31072695 31072695 G A ZNF668 Silent p.C541C 0.11 TCGA-44-7661-01 16 65319336 65319336 G T LINC00922 RNA 0.18 TCGA-44-7661-01 17 11515183 11515183 C T DNAH9 Intron 0.22 TCGA-44-7661-01 17 37822059 37822059 G C TCAP Silent p.L67L 0.18 TCGA-44-7661-01 17 38151470 38151470 G T PSMD3 Missense_Mutation p.D380Y 0.09 deleterious(0.01) possibly_damaging(0.722) TCGA-44-7661-01 17 38643371 38643371 G A TNS4 Missense_Mutation p.A402V 0.30 tolerated(0.3) benign(0.025) TCGA-44-7661-01 17 39092847 39092847 G A KRT23 Silent p.S3S 0.16 TCGA-44-7661-01 17 39279951 39279951 G T KRTAP4-12 Missense_Mutation p.R142S 0.27 tolerated(0.06) unknown(0) TCGA-44-7661-01 17 47656497 47656497 C T NXPH3 Silent p.I198I 0.06 TCGA-44-7661-01 17 59988990 59988990 G C INTS2 Missense_Mutation p.A290G 0.17 tolerated(0.48) benign(0.045) TCGA-44-7661-01 17 62041056 62041056 T A SCN4A Missense_Mutation p.S528C 0.22 deleterious(0) probably_damaging(0.91) TCGA-44-7661-01 17 65889808 65889808 C T BPTF Missense_Mutation p.S793L 0.06 possibly_damaging(0.713) TCGA-44-7661-01 17 66883566 66883566 G - ABCA8 Frame_Shift_Del p.L1036Cfs*11 0.14 TCGA-44-7661-01 17 71228502 71228502 G T FAM104A 5'UTR 0.38 TCGA-44-7661-01 17 74274093 74274093 G A QRICH2 Silent p.C1532C 0.09 TCGA-44-7661-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.17 TCGA-44-7661-01 17 79411763 79411763 C T RP11-1055B8.7 Missense_Mutation p.P861L 0.16 probably_damaging(0.999) TCGA-44-7661-01 17 9837548 9837548 C G GAS7 Missense_Mutation p.A274P 0.30 deleterious(0.01) possibly_damaging(0.882) TCGA-44-7661-01 18 14542680 14542680 C A POTEC Missense_Mutation p.D156Y 0.12 deleterious(0) probably_damaging(0.988) TCGA-44-7661-01 18 14763854 14763854 G A ANKRD30B Silent p.Q330Q 0.17 TCGA-44-7661-01 18 28734892 28734892 T A DSC1 Missense_Mutation p.I158F 0.09 deleterious(0) possibly_damaging(0.791) TCGA-44-7661-01 18 32398234 32398234 G T DTNA Missense_Mutation p.W272C 0.13 deleterious(0) probably_damaging(0.993) TCGA-44-7661-01 18 56203730 56203730 C A ALPK2 Missense_Mutation p.W1230L 0.13 tolerated(0.07) possibly_damaging(0.451) TCGA-44-7661-01 18 56819837 56819837 C G SEC11C Missense_Mutation p.I89M 0.04 deleterious(0) probably_damaging(0.951) TCGA-44-7661-01 19 10124205 10124205 C A RDH8 Missense_Mutation p.S31Y 0.15 deleterious(0) probably_damaging(0.956) TCGA-44-7661-01 19 14992093 14992093 G T OR7A17 Silent p.P25P 0.11 TCGA-44-7661-01 19 15072885 15072885 C T SLC1A6 Silent p.K288K 0.19 TCGA-44-7661-01 19 16268358 16268358 C G HSH2D 3'Flank 0.30 TCGA-44-7661-01 19 16268375 16268375 C T HSH2D 3'Flank 0.24 TCGA-44-7661-01 19 18001692 18001692 C T SLC5A5 Intron 0.10 TCGA-44-7661-01 19 18375845 18375845 C T KIAA1683 Silent p.P835P 0.10 TCGA-44-7661-01 19 18893711 18893711 C T COMP 3'UTR 0.10 TCGA-44-7661-01 19 2939382 2939382 C A ZNF77 Silent p.V9V 0.11 TCGA-44-7661-01 19 51021798 51021798 A T LRRC4B Missense_Mutation p.M391K 0.17 tolerated(0.13) benign(0.12) TCGA-44-7661-01 19 52919235 52919235 G T ZNF528 Missense_Mutation p.G377V 0.13 deleterious(0.01) probably_damaging(1) TCGA-44-7661-01 19 52919325 52919325 G C ZNF528 Missense_Mutation p.R407T 0.06 deleterious(0.01) benign(0.109) TCGA-44-7661-01 19 53158832 53158832 T A CTD-3099C6.9 5'Flank 0.10 TCGA-44-7661-01 19 53994790 53994790 G T ZNF813 Missense_Mutation p.G435V 0.13 deleterious(0.01) probably_damaging(0.99) TCGA-44-7661-01 19 57065506 57065506 A G ZFP28 Missense_Mutation p.N451S 0.13 tolerated(0.6) benign(0.034) TCGA-44-7661-01 19 57910517 57910517 A G ZNF548 Missense_Mutation p.K300E 0.21 tolerated(0.08) probably_damaging(0.985) TCGA-44-7661-01 19 58187796 58187796 G T ZSCAN4 Missense_Mutation p.G95C 0.16 deleterious(0) possibly_damaging(0.827) TCGA-44-7661-01 19 7591725 7591725 G T MCOLN1 Missense_Mutation p.G162W 0.18 deleterious(0) benign(0.264) TCGA-44-7661-01 19 8056590 8056590 C T ELAVL1 Missense_Mutation p.R37Q 0.08 deleterious(0.05) benign(0.085) TCGA-44-7661-01 19 8056613 8056613 C G ELAVL1 Missense_Mutation p.Q29H 0.05 deleterious(0) possibly_damaging(0.649) TCGA-44-7661-01 19 9065227 9065227 C T MUC16 Missense_Mutation p.V7407I 0.11 unknown(0) TCGA-44-7661-01 19 9524671 9524671 T A ZNF266 Missense_Mutation p.Q310H 0.13 tolerated(0.54) benign(0.03) TCGA-44-7661-01 1 10035808 10035808 T A NMNAT1 Missense_Mutation p.W92R 0.21 deleterious(0) benign(0.133) TCGA-44-7661-01 1 12171958 12171958 T A TNFRSF8 Missense_Mutation p.L227Q 0.12 tolerated(0.25) benign(0.192) TCGA-44-7661-01 1 145440958 145440958 A T TXNIP Missense_Mutation p.T349S 0.14 tolerated(0.42) benign(0.197) TCGA-44-7661-01 1 152081786 152081786 C T TCHH Missense_Mutation p.E1303K 0.07 unknown(0) TCGA-44-7661-01 1 152191497 152191497 G T HRNR Missense_Mutation p.H870N 0.14 unknown(0) TCGA-44-7661-01 1 162302859 162302859 G T NOS1AP Missense_Mutation p.A133S 0.15 deleterious(0.03) probably_damaging(0.984) TCGA-44-7661-01 1 167097867 167097867 C A DUSP27 3'UTR 0.20 TCGA-44-7661-01 1 175092534 175092534 A T TNN Splice_Site p.X884_splice 0.15 TCGA-44-7661-01 1 184041382 184041382 A C TSEN15 Missense_Mutation p.T149P 0.11 deleterious(0) probably_damaging(0.988) TCGA-44-7661-01 1 19027165 19027165 C A PAX7 Missense_Mutation p.R269S 0.20 deleterious(0.01) probably_damaging(1) TCGA-44-7661-01 1 196205163 196205163 G T KCNT2 Silent p.I1083I 0.15 TCGA-44-7661-01 1 197325967 197325967 C A CRB1 Missense_Mutation p.T332K 0.11 tolerated(0.09) possibly_damaging(0.864) TCGA-44-7661-01 1 200818967 200818967 G T CAMSAP2 Missense_Mutation p.D1024Y 0.12 tolerated(0.06) possibly_damaging(0.73) TCGA-44-7661-01 1 2082357 2082357 G T PRKCZ Missense_Mutation p.K272N 0.12 deleterious(0) probably_damaging(0.953) TCGA-44-7661-01 1 236759177 236759177 C G HEATR1 Missense_Mutation p.L304F 0.06 deleterious(0) probably_damaging(0.994) TCGA-44-7661-01 1 237754046 237754046 G T RYR2 Missense_Mutation p.S1305I 0.12 benign(0.189) TCGA-44-7661-01 1 240601376 240601376 G - FMN2 Frame_Shift_Del p.A1643Hfs*5 0.13 TCGA-44-7661-01 1 242048760 242048760 G T EXO1 Missense_Mutation p.G786W 0.19 deleterious(0) probably_damaging(0.999) TCGA-44-7661-01 1 24507323 24507323 G A IFNLR1 Missense_Mutation p.P27L 0.11 deleterious(0) probably_damaging(1) TCGA-44-7661-01 1 247587618 247587618 G C NLRP3 Silent p.V291V 0.11 TCGA-44-7661-01 1 248059060 248059060 C A OR2W3 Missense_Mutation p.P58T 0.12 deleterious(0) probably_damaging(1) TCGA-44-7661-01 1 248202538 248202538 T A OR2L2 3'UTR 0.13 TCGA-44-7661-01 1 248844960 248844960 A T OR14I1 Missense_Mutation p.Y216N 0.19 deleterious(0) probably_damaging(1) TCGA-44-7661-01 1 67327965 67327965 C - WDR78 Frame_Shift_Del p.D321Ifs*16 0.13 TCGA-44-7661-01 1 86890009 86890009 C G CLCA2 Missense_Mutation p.P27A 0.12 tolerated(0.6) benign(0.021) TCGA-44-7661-01 1 92511127 92511127 G T EPHX4 Missense_Mutation p.G172C 0.13 deleterious(0) probably_damaging(1) TCGA-44-7661-01 20 21492527 21492527 G C NKX2-2 3'UTR 0.21 TCGA-44-7661-01 20 35060173 35060173 C A DLGAP4 Missense_Mutation p.P18Q 0.09 deleterious(0) possibly_damaging(0.865) TCGA-44-7661-01 20 35539683 35539683 C A SAMHD1 Missense_Mutation p.G403V 0.18 tolerated(0.15) benign(0.015) TCGA-44-7661-01 20 35860773 35860773 G T RPN2 Silent p.P552P 0.14 TCGA-44-7661-01 20 42089452 42089452 C G SRSF6 Missense_Mutation p.R262G 0.11 deleterious(0.05) unknown(0) TCGA-44-7661-01 20 43944983 43944983 G A RBPJL Splice_Site p.X392_splice 0.15 TCGA-44-7661-01 20 50407792 50407792 G A SALL4 Silent p.F410F 0.09 TCGA-44-7661-01 20 56728654 56728654 G A C20orf85 Nonsense_Mutation p.W41* 0.08 TCGA-44-7661-01 20 7866489 7866489 A G HAO1 Missense_Mutation p.V279A 0.16 tolerated(0.08) benign(0.206) TCGA-44-7661-01 21 11020843 11020843 C A BAGE2 RNA 0.05 TCGA-44-7661-01 21 31973512 31973512 G T KRTAP22-1 Missense_Mutation p.G25C 0.11 unknown(0) TCGA-44-7661-01 21 34876749 34876749 T A GART Silent p.T937T 0.20 TCGA-44-7661-01 21 46032219 46032219 C A KRTAP10-8 Missense_Mutation p.P68T 0.10 deleterious(0.01) benign(0.001) TCGA-44-7661-01 22 16267022 16267022 G T POTEH Missense_Mutation p.A476D 0.06 tolerated(0.2) benign(0.085) TCGA-44-7661-01 22 19026299 19026299 C A DGCR2 3'UTR 0.16 TCGA-44-7661-01 22 22317257 22317257 C A TOP3B Missense_Mutation p.A405S 0.25 tolerated(0.42) benign(0.026) TCGA-44-7661-01 22 26423142 26423142 A G MYO18B Missense_Mutation p.K2401R 0.11 tolerated(0.13) benign(0.019) TCGA-44-7661-01 22 29191699 29191699 G A XBP1 Silent p.F207F 0.09 TCGA-44-7661-01 2 101188174 101188174 C T PDCL3 Missense_Mutation p.P164L 0.13 deleterious(0.01) probably_damaging(1) TCGA-44-7661-01 2 111411040 111411040 A G BUB1 Missense_Mutation p.V646A 0.16 tolerated(0.99) benign(0.004) TCGA-44-7661-01 2 133543159 133543159 G T NCKAP5 Missense_Mutation p.Q409K 0.12 deleterious(0) probably_damaging(0.998) TCGA-44-7661-01 2 136626280 136626280 G C MCM6 Missense_Mutation p.F172L 0.09 deleterious(0.03) benign(0.242) TCGA-44-7661-01 2 141291688 141291688 C A LRP1B Missense_Mutation p.G2555V 0.15 probably_damaging(0.988) TCGA-44-7661-01 2 153575486 153575486 C G ARL6IP6 Silent p.L116L 0.05 TCGA-44-7661-01 2 17697378 17697378 G C RAD51AP2 Missense_Mutation p.Q769E 0.18 tolerated(0.1) benign(0.011) TCGA-44-7661-01 2 179423171 179423171 C G TTN Silent p.L29005L 0.14 TCGA-44-7661-01 2 179477662 179477662 C G TTN Missense_Mutation p.D16596H 0.09 TCGA-44-7661-01 2 179477675 179477675 C T TTN Silent p.L16591L 0.13 TCGA-44-7661-01 2 182786958 182786958 C T SSFA2 Missense_Mutation p.S1165F 0.05 deleterious(0.03) possibly_damaging(0.469) TCGA-44-7661-01 2 185801013 185801013 A T ZNF804A Missense_Mutation p.K297I 0.17 deleterious(0) possibly_damaging(0.694) TCGA-44-7661-01 2 196825332 196825332 C A DNAH7 Missense_Mutation p.G848V 0.09 deleterious(0) probably_damaging(0.987) TCGA-44-7661-01 2 219029723 219029723 C T CXCR1 Missense_Mutation p.R71H 0.12 tolerated(0.11) benign(0.219) TCGA-44-7661-01 2 241812406 241812406 C A AGXT Missense_Mutation p.L179M 0.14 deleterious(0) probably_damaging(0.995) TCGA-44-7661-01 2 27463183 27463183 C T CAD Silent p.F1849F 0.05 TCGA-44-7661-01 2 32476210 32476210 C G NLRC4 Missense_Mutation p.Q241H 0.17 tolerated(0.07) benign(0.007) TCGA-44-7661-01 2 40656204 40656204 A T SLC8A1 Missense_Mutation p.V406D 0.07 tolerated(0.21) benign(0.137) TCGA-44-7661-01 2 44016794 44016794 G - DYNC2LI1 Frame_Shift_Del p.E86Nfs*11 0.12 TCGA-44-7661-01 2 54155333 54155333 G A PSME4 Missense_Mutation p.P475L 0.14 deleterious(0) probably_damaging(0.957) TCGA-44-7661-01 2 54155334 54155334 G C PSME4 Missense_Mutation p.P475A 0.15 deleterious(0.01) possibly_damaging(0.688) TCGA-44-7661-01 2 54826305 54826316 CACAGACCTGTA - SPTBN1 In_Frame_Del p.Y79_L82del 0.12 TCGA-44-7661-01 2 74734264 74734264 C G PCGF1 Missense_Mutation p.R35P 0.09 deleterious(0.01) benign(0.296) TCGA-44-7661-01 2 80530240 80530240 C A LRRTM1 Silent p.L235L 0.06 TCGA-44-7661-01 2 85270749 85270749 A G KCMF1 Silent p.A129A 0.11 TCGA-44-7661-01 3 119887088 119887088 C A GPR156 Silent p.A412A 0.17 TCGA-44-7661-01 3 138183186 138183186 G C ESYT3 Splice_Site p.X306_splice 0.11 TCGA-44-7661-01 3 154147231 154147231 C A GPR149 Silent p.L58L 0.10 TCGA-44-7661-01 3 158983034 158983034 C A IQCJ Missense_Mutation p.P108T 0.12 tolerated_low_confidence(0.8) benign(0) TCGA-44-7661-01 3 161221673 161221673 C A OTOL1 Missense_Mutation p.D459E 0.15 deleterious(0) probably_damaging(0.976) TCGA-44-7661-01 3 193209136 193209136 C G ATP13A4 Missense_Mutation p.W195C 0.08 deleterious(0) probably_damaging(0.998) TCGA-44-7661-01 3 39174476 39174476 T A TTC21A Intron 0.21 TCGA-44-7661-01 3 447322 447322 C A CHL1 Nonsense_Mutation p.Y1201* 0.22 TCGA-44-7661-01 3 51749622 51749622 T A GRM2 Silent p.G611G 0.16 TCGA-44-7661-01 3 53145859 53145859 C T RFT1 Silent p.Q254Q 0.06 TCGA-44-7661-01 3 77147290 77147290 G T ROBO2 Nonsense_Mutation p.E79* 0.20 TCGA-44-7661-01 3 97983203 97983203 G T OR5H6 Silent p.L25L 0.12 TCGA-44-7661-01 4 123168473 123168473 C G KIAA1109 Missense_Mutation p.H1825D 0.07 possibly_damaging(0.882) TCGA-44-7661-01 4 13371561 13371561 T A RAB28 Intron 0.08 TCGA-44-7661-01 4 140058912 140058912 G A ELF2 5'UTR 0.10 TCGA-44-7661-01 4 143081599 143081599 G A INPP4B Missense_Mutation p.T492I 0.27 tolerated(0.2) benign(0.011) TCGA-44-7661-01 4 155157032 155157032 A T DCHS2 Silent p.P2469P 0.19 TCGA-44-7661-01 4 155507469 155507469 C A FGA Missense_Mutation p.G371V 0.25 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-44-7661-01 4 156135529 156135529 G T NPY2R Silent p.L146L 0.10 TCGA-44-7661-01 4 177648948 177648948 C A VEGFC Missense_Mutation p.S179I 0.30 tolerated(0.05) benign(0.326) TCGA-44-7661-01 4 183713570 183713570 C A TENM3 Nonsense_Mutation p.Y1915* 0.10 TCGA-44-7661-01 4 2883715 2883715 G T ADD1 Missense_Mutation p.D96Y 0.16 deleterious(0) probably_damaging(1) TCGA-44-7661-01 4 39109275 39109275 C G KLHL5 Missense_Mutation p.Q584E 0.07 tolerated(0.43) benign(0.042) TCGA-44-7661-01 4 57193886 57193886 C A KIAA1211 Silent p.A1206A 0.09 TCGA-44-7661-01 4 5811337 5811337 A T EVC Silent p.L927L 0.29 TCGA-44-7661-01 4 70070188 70070188 C A UGT2B11 Missense_Mutation p.D424Y 0.12 deleterious(0.02) probably_damaging(0.991) TCGA-44-7661-01 4 71232504 71232504 C A SMR3A Silent p.P66P 0.11 TCGA-44-7661-01 4 72634097 72634097 C T GC Missense_Mutation p.S80N 0.14 tolerated(0.13) benign(0.002) TCGA-44-7661-01 4 72649702 72649702 C - GC Frame_Shift_Del p.A31Hfs*6 0.14 TCGA-44-7661-01 4 81188179 81188179 G A FGF5 Silent p.L67L 0.12 TCGA-44-7661-01 4 88959424 88959424 G C PKD2 Missense_Mutation p.D289H 0.13 deleterious(0) probably_damaging(0.973) TCGA-44-7661-01 4 95223336 95223336 G A HPGDS Silent p.D132D 0.20 TCGA-44-7661-01 4 9982338 9982338 T C SLC2A9 Missense_Mutation p.M187V 0.28 deleterious(0.01) possibly_damaging(0.457) TCGA-44-7661-01 4 99960598 99960598 G A METAP1 Silent p.G138G 0.19 TCGA-44-7661-01 5 101794130 101794130 G T SLCO6A1 Missense_Mutation p.L363M 0.10 deleterious(0.05) benign(0.195) TCGA-44-7661-01 5 10382001 10382001 T A MARCH6 Missense_Mutation p.F94I 0.16 tolerated(0.4) benign(0.027) TCGA-44-7661-01 5 10382003 10382003 T A MARCH6 Missense_Mutation p.F94L 0.15 tolerated(1) benign(0.002) TCGA-44-7661-01 5 112174586 112174586 G C APC Missense_Mutation p.V1099L 0.28 benign(0.094) TCGA-44-7661-01 5 115803377 115803377 G T SEMA6A Missense_Mutation p.S599Y 0.22 tolerated(0.77) benign(0.332) TCGA-44-7661-01 5 140503988 140503988 G C PCDHB4 3'UTR 0.14 TCGA-44-7661-01 5 140774002 140774002 C A PCDHGA8 Missense_Mutation p.P541H 0.15 deleterious_low_confidence(0) possibly_damaging(0.778) TCGA-44-7661-01 5 149457738 149457738 G T CSF1R Silent p.I222I 0.12 TCGA-44-7661-01 5 160757927 160757927 C A GABRB2 Missense_Mutation p.S347I 0.10 tolerated(0.06) benign(0.063) TCGA-44-7661-01 5 161318041 161318041 G T GABRA1 Missense_Mutation p.A281S 0.11 deleterious(0.01) benign(0.303) TCGA-44-7661-01 5 162911107 162911107 G T HMMR Missense_Mutation p.Q606H 0.12 deleterious(0.02) probably_damaging(0.922) TCGA-44-7661-01 5 162911108 162911108 G T HMMR Missense_Mutation p.A607S 0.12 deleterious(0) benign(0.201) TCGA-44-7661-01 5 23509086 23509086 T C PRDM9 5'UTR 0.27 TCGA-44-7661-01 5 26881626 26881626 G C CDH9 Silent p.G663G 0.12 TCGA-44-7661-01 5 33527301 33527301 C T ADAMTS12 Missense_Mutation p.E1593K 0.15 tolerated_low_confidence(0.62) unknown(0) TCGA-44-7661-01 5 33937388 33937388 C A RXFP3 Nonsense_Mutation p.Y181* 0.11 TCGA-44-7661-01 5 38925343 38925343 G T OSMR Silent p.P694P 0.21 TCGA-44-7661-01 5 52781838 52781838 C T FST Missense_Mutation p.P337L 0.13 deleterious(0.01) benign(0.011) TCGA-44-7661-01 5 55082457 55082457 C T DDX4 Nonsense_Mutation p.R326* 0.07 TCGA-44-7661-01 5 7868043 7868043 G A FASTKD3 Missense_Mutation p.P52S 0.20 tolerated(0.94) benign(0.01) TCGA-44-7661-01 6 10928640 10928640 A T SYCP2L Missense_Mutation p.Q482L 0.15 tolerated(0.34) benign(0.001) TCGA-44-7661-01 6 116432047 116432047 G T NT5DC1 Missense_Mutation p.V98L 0.16 deleterious(0.03) benign(0.001) TCGA-44-7661-01 6 12163743 12163743 G T HIVEP1 Silent p.G2402G 0.12 TCGA-44-7661-01 6 129609190 129609190 G T LAMA2 Silent p.A912A 0.33 TCGA-44-7661-01 6 151674410 151674410 T A AKAP12 Silent p.S1628S 0.16 TCGA-44-7661-01 6 161527737 161527737 G T MAP3K4 Nonsense_Mutation p.G1350* 0.27 TCGA-44-7661-01 6 26158619 26158619 C T HIST1H2BD Silent p.I74I 0.05 TCGA-44-7661-01 6 2948736 2948736 G A SERPINB6 Silent p.D309D 0.23 TCGA-44-7661-01 6 32942508 32942508 G T BRD2 Missense_Mutation p.R100L 0.10 deleterious(0.04) possibly_damaging(0.574) TCGA-44-7661-01 6 35438059 35438059 C G RPL10A Silent p.L138L 0.07 TCGA-44-7661-01 6 38980305 38980305 C G DNAH8 Missense_Mutation p.L4319V 0.04 possibly_damaging(0.903) TCGA-44-7661-01 6 39895344 39895344 C G MOCS1 5'UTR 0.09 TCGA-44-7661-01 6 43323306 43323306 T A ZNF318 Missense_Mutation p.Y589F 0.13 probably_damaging(0.975) TCGA-44-7661-01 6 46135475 46135475 C A ENPP5 Silent p.T175T 0.09 TCGA-44-7661-01 6 49698878 49698878 C A CRISP3 Missense_Mutation p.C226F 0.12 deleterious(0) probably_damaging(0.998) TCGA-44-7661-01 6 51751952 51751952 T A PKHD1 Missense_Mutation p.N2363I 0.16 deleterious(0) probably_damaging(1) TCGA-44-7661-01 6 54735345 54735345 G T FAM83B Missense_Mutation p.A101S 0.21 deleterious(0.03) possibly_damaging(0.744) TCGA-44-7661-01 6 56489306 56489306 G A DST Intron 0.12 TCGA-44-7661-01 6 66054047 66054047 C T EYS Missense_Mutation p.G495R 0.10 tolerated(0.23) benign(0.207) TCGA-44-7661-01 6 84417640 84417640 C A SNAP91 Missense_Mutation p.G3C 0.16 deleterious(0) unknown(0) TCGA-44-7661-01 7 111368367 111368367 C A DOCK4 Missense_Mutation p.R1955L 0.29 deleterious_low_confidence(0.01) benign(0.097) TCGA-44-7661-01 7 11675887 11675887 C A THSD7A Nonsense_Mutation p.E298* 0.12 TCGA-44-7661-01 7 130040584 130040584 C G CEP41 Missense_Mutation p.E241Q 0.15 tolerated(0.21) possibly_damaging(0.7) TCGA-44-7661-01 7 131982937 131982937 C T PLXNA4 Silent p.T472T 0.08 TCGA-44-7661-01 7 139415871 139415871 G C HIPK2 Missense_Mutation p.I321M 0.08 deleterious(0) probably_damaging(0.998) TCGA-44-7661-01 7 143175742 143175742 C T TAS2R41 Silent p.S259S 0.08 TCGA-44-7661-01 7 143826518 143826518 G T OR2A14 Missense_Mutation p.A105S 0.15 tolerated(0.32) benign(0.012) TCGA-44-7661-01 7 149129311 149129311 G A ZNF777 Silent p.R684R 0.07 TCGA-44-7661-01 7 31735131 31735131 C A PPP1R17 Missense_Mutation p.P44H 0.14 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-44-7661-01 7 39472855 39472855 G T POU6F2 Silent p.T402T 0.14 TCGA-44-7661-01 7 43846649 43846649 G T BLVRA Missense_Mutation p.G236W 0.32 deleterious(0) probably_damaging(1) TCGA-44-7661-01 7 47698786 47698786 A G C7orf65 Missense_Mutation p.K139R 0.14 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-44-7661-01 7 48411989 48411989 T C ABCA13 Silent p.N3676N 0.24 TCGA-44-7661-01 7 4965105 4965105 C G MMD2 Missense_Mutation p.A36P 0.15 deleterious(0.02) probably_damaging(0.953) TCGA-44-7661-01 7 6027151 6027151 C A PMS2 Silent p.V415V 0.21 TCGA-44-7661-01 7 72398960 72398960 G C POM121 Missense_Mutation p.E89Q 0.08 deleterious(0.02) possibly_damaging(0.785) TCGA-44-7661-01 7 87082309 87082309 C A ABCB4 Nonsense_Mutation p.G163* 0.21 TCGA-44-7661-01 7 91724458 91724458 A T AKAP9 Missense_Mutation p.S3234C 0.24 possibly_damaging(0.839) TCGA-44-7661-01 7 98554089 98554089 G C TRRAP Missense_Mutation p.R2048T 0.10 benign(0.011) TCGA-44-7661-01 7 99951090 99951090 G A PILRB 5'UTR 0.09 TCGA-44-7661-01 8 109240518 109240518 C A EIF3E Missense_Mutation p.D234Y 0.11 deleterious(0) possibly_damaging(0.746) TCGA-44-7661-01 8 113358372 113358372 G T CSMD3 Silent p.P2132P 0.11 TCGA-44-7661-01 8 134146946 134146946 G A TG Missense_Mutation p.E2739K 0.07 tolerated(0.67) benign(0.003) TCGA-44-7661-01 8 139209815 139209815 C T FAM135B Missense_Mutation p.R256H 0.10 tolerated(1) benign(0.004) TCGA-44-7661-01 8 139629185 139629185 G A COL22A1 Missense_Mutation p.T1281I 0.25 unknown(0) TCGA-44-7661-01 8 145003898 145003898 C A PLEC Nonsense_Mutation p.G1084* 0.53 TCGA-44-7661-01 8 17579393 17579393 T A MTUS1 Intron 0.12 TCGA-44-7661-01 8 19218793 19218793 G T SH2D4A Missense_Mutation p.S225I 0.16 deleterious(0.02) benign(0.071) TCGA-44-7661-01 8 2092911 2092911 T A MYOM2 3'UTR 0.11 TCGA-44-7661-01 8 22428517 22428517 A T SORBS3 Missense_Mutation p.Y509F 0.13 deleterious(0.01) possibly_damaging(0.76) TCGA-44-7661-01 8 25744349 25744349 G T EBF2 Missense_Mutation p.P311T 0.13 deleterious(0.02) probably_damaging(0.977) TCGA-44-7661-01 8 39871174 39871174 G C IDO2 Missense_Mutation p.Q283H 0.09 deleterious(0) probably_damaging(1) TCGA-44-7661-01 8 77618910 77618910 C A ZFHX4 Missense_Mutation p.L863I 0.50 possibly_damaging(0.567) TCGA-44-7661-01 9 100245541 100245541 G C TDRD7 Silent p.L941L 0.06 TCGA-44-7661-01 9 107367901 107367901 C G OR13C2 Missense_Mutation p.W3S 0.16 tolerated(0.6) benign(0.147) TCGA-44-7661-01 9 117852845 117852845 G A TNC Silent p.A151A 0.08 TCGA-44-7661-01 9 125315565 125315565 G A OR1N2 Silent p.E39E 0.13 TCGA-44-7661-01 9 18753443 18753443 C A ADAMTSL1 Missense_Mutation p.S718R 0.13 tolerated(0.14) benign(0.018) TCGA-44-7661-01 9 32466353 32466353 C G DDX58 Missense_Mutation p.E758Q 0.05 deleterious(0) probably_damaging(0.997) TCGA-44-7661-01 9 35044909 35044909 C A C9orf131 Silent p.A761A 0.24 TCGA-44-7661-01 9 35310603 35310603 A T UNC13B Missense_Mutation p.S301C 0.14 deleterious_low_confidence(0) benign(0.408) TCGA-44-7661-01 9 39118041 39118041 T C CNTNAP3 Intron 0.13 TCGA-44-7661-01 9 39887517 39887517 C A SPATA31A2 Silent p.T168T 0.11 TCGA-44-7661-01 X 100486680 100486680 G T DRP2 Missense_Mutation p.R15L 0.18 deleterious_low_confidence(0) benign(0.049) TCGA-44-7661-01 X 100613358 100613358 C T BTK Missense_Mutation p.E348K 0.06 deleterious(0.01) probably_damaging(0.984) TCGA-44-7661-01 X 102612910 102612910 T A WBP5 Missense_Mutation p.Y100N 0.19 deleterious(0.01) benign(0.255) TCGA-44-7661-01 X 109695632 109695632 C A RGAG1 Missense_Mutation p.T596K 0.13 deleterious(0.04) possibly_damaging(0.474) TCGA-44-7661-01 X 110439737 110439737 C A PAK3 Missense_Mutation p.P462T 0.16 deleterious(0) probably_damaging(1) TCGA-44-7661-01 X 117566802 117566802 C A WDR44 Missense_Mutation p.P599Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-44-7661-01 X 117959387 117959387 C A ZCCHC12 Silent p.T60T 0.16 TCGA-44-7661-01 X 129148345 129148345 G A BCORL1 Missense_Mutation p.G533S 0.10 benign(0.019) TCGA-44-7661-01 X 12938714 12938714 C G TLR8 Missense_Mutation p.Q519E 0.09 deleterious(0.02) possibly_damaging(0.564) TCGA-44-7661-01 X 131518705 131518705 G A MBNL3 Missense_Mutation p.P315L 0.20 deleterious(0) probably_damaging(0.999) TCGA-44-7661-01 X 134983716 134983716 A T SAGE1 Splice_Site p.X30_splice 0.10 TCGA-44-7661-01 X 140336551 140336551 C A SPANXC Missense_Mutation p.V14F 0.17 deleterious(0.01) possibly_damaging(0.557) TCGA-44-7661-01 X 148038060 148038060 A T AFF2 Nonsense_Mutation p.K829* 0.10 TCGA-44-7661-01 X 152159339 152159339 G C PNMA5 Silent p.P268P 0.11 TCGA-44-7661-01 X 154227864 154227864 C G F8 Missense_Mutation p.R52T 0.06 tolerated(0.36) benign(0.006) TCGA-44-7661-01 X 21609204 21609204 G T CNKSR2 Missense_Mutation p.E574D 0.14 deleterious(0.01) probably_damaging(0.969) TCGA-44-7661-01 X 22056375 22056375 C A PHEX Intron 0.25 TCGA-44-7661-01 X 30872883 30872883 C A TAB3 Missense_Mutation p.C300F 0.16 tolerated(0.7) probably_damaging(0.993) TCGA-44-7661-01 X 37026939 37026939 G T FAM47C Silent p.P152P 0.16 TCGA-44-7661-01 X 47028738 47028738 C - RBM10 Frame_Shift_Del p.R15Afs*119 0.22 TCGA-44-7661-01 X 54328226 54328226 T C WNK3 Missense_Mutation p.I386V 0.12 deleterious(0) probably_damaging(0.999) TCGA-44-7661-01 X 69497954 69497954 A C ARR3 Missense_Mutation p.K245Q 0.14 tolerated(1) probably_damaging(0.996) TCGA-44-7661-01 X 86773224 86773224 G T KLHL4 Missense_Mutation p.V110F 0.18 tolerated_low_confidence(0.19) benign(0.002) TCGA-44-7662-01 10 103345895 103345895 C A POLL Missense_Mutation p.R45L 0.16 tolerated(0.1) benign(0.031) TCGA-44-7662-01 10 103906433 103906433 C T PPRC1 Silent p.L1228L 0.28 TCGA-44-7662-01 10 105158243 105158243 G C PDCD11 Missense_Mutation p.E20D 0.16 tolerated(0.42) benign(0.003) TCGA-44-7662-01 10 105365611 105365611 C A SH3PXD2A Nonsense_Mutation p.E430* 0.31 TCGA-44-7662-01 10 108366923 108366923 C A SORCS1 Splice_Site p.X1055_splice 0.12 TCGA-44-7662-01 10 112838897 112838897 G A ADRA2A Silent p.Q381Q 0.17 TCGA-44-7662-01 10 114164554 114164554 A G ACSL5 Missense_Mutation p.N197S 0.16 deleterious(0) probably_damaging(0.999) TCGA-44-7662-01 10 114203279 114203279 C T ZDHHC6 Missense_Mutation p.C118Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-44-7662-01 10 115409891 115409891 G T NRAP Missense_Mutation p.H265N 0.15 deleterious(0.05) benign(0.184) TCGA-44-7662-01 10 118315520 118315520 G C PNLIP Missense_Mutation p.D274H 0.13 deleterious(0) benign(0.057) TCGA-44-7662-01 10 124402858 124402858 G A DMBT1 Missense_Mutation p.V2396I 0.35 tolerated(0.1) probably_damaging(0.939) TCGA-44-7662-01 10 15256244 15256244 G T FAM171A1 Missense_Mutation p.T448N 0.11 deleterious(0.03) probably_damaging(0.95) TCGA-44-7662-01 10 21875246 21875246 G T MLLT10 Missense_Mutation p.K88N 0.17 deleterious(0) benign(0.043) TCGA-44-7662-01 10 24878202 24878202 T C ARHGAP21 Missense_Mutation p.K1394E 0.26 deleterious(0.01) possibly_damaging(0.891) TCGA-44-7662-01 10 25887785 25887785 A C GPR158 Missense_Mutation p.Q1077P 0.18 tolerated(0.08) benign(0.009) TCGA-44-7662-01 10 25887787 25887787 G C GPR158 Missense_Mutation p.G1078R 0.18 tolerated(0.15) benign(0.044) TCGA-44-7662-01 10 26558096 26558096 A G GAD2 Silent p.K323K 0.17 TCGA-44-7662-01 10 27497332 27497332 T A ACBD5 Missense_Mutation p.Q416L 0.34 tolerated(0.25) probably_damaging(0.913) TCGA-44-7662-01 10 28884908 28884908 C G WAC Missense_Mutation p.S286C 0.24 deleterious_low_confidence(0.01) benign(0.436) TCGA-44-7662-01 10 31815707 31815707 A T ZEB1 Nonsense_Mutation p.K965* 0.17 TCGA-44-7662-01 10 32594782 32594782 T A EPC1 Silent p.P77P 0.28 TCGA-44-7662-01 10 38344699 38344699 G A ZNF33A Silent p.G549G 0.08 TCGA-44-7662-01 10 43326451 43326451 G C BMS1 Missense_Mutation p.K1252N 0.24 deleterious(0) probably_damaging(0.987) TCGA-44-7662-01 10 43678731 43678731 G C CSGALNACT2 Missense_Mutation p.G457A 0.12 tolerated(0.21) benign(0.422) TCGA-44-7662-01 10 50594820 50594820 C A DRGX Missense_Mutation p.A112S 0.26 tolerated(0.48) benign(0.004) TCGA-44-7662-01 10 54041979 54041979 G T PRKG1 Nonsense_Mutation p.E538* 0.41 TCGA-44-7662-01 10 70123383 70123383 T C RUFY2 Missense_Mutation p.E540G 0.23 deleterious(0) benign(0.332) TCGA-44-7662-01 10 7262394 7262394 G T SFMBT2 Missense_Mutation p.L437I 0.15 tolerated(0.05) probably_damaging(0.997) TCGA-44-7662-01 10 8007650 8007650 A G TAF3 Missense_Mutation p.E726G 0.20 deleterious_low_confidence(0.03) benign(0.403) TCGA-44-7662-01 10 87407258 87407258 G A GRID1 Intron 0.28 TCGA-44-7662-01 10 89653807 89653807 G T PTEN Missense_Mutation p.M35I 0.25 deleterious(0) possibly_damaging(0.889) TCGA-44-7662-01 10 95168668 95168668 C T MYOF Missense_Mutation p.R202H 0.12 deleterious(0) probably_damaging(1) TCGA-44-7662-01 11 100061934 100061934 G T CNTN5 Missense_Mutation p.G553W 0.21 deleterious(0) probably_damaging(0.977) TCGA-44-7662-01 11 106681097 106681097 T C GUCY1A2 Silent p.L438L 0.19 TCGA-44-7662-01 11 108382102 108382102 C G EXPH5 Missense_Mutation p.D1378H 0.29 deleterious(0.01) probably_damaging(0.912) TCGA-44-7662-01 11 108810978 108810978 C T DDX10 Missense_Mutation p.T819I 0.07 tolerated(0.17) benign(0.001) TCGA-44-7662-01 11 1090835 1090835 G T MUC2 Missense_Mutation p.G1244C 0.27 benign(0.278) TCGA-44-7662-01 11 113078056 113078056 G C NCAM1 Silent p.V293V 0.22 TCGA-44-7662-01 11 113815415 113815415 G C HTR3B Missense_Mutation p.R343P 0.26 tolerated(0.12) benign(0.38) TCGA-44-7662-01 11 116729004 116729004 T C SIK3 Silent p.Q953Q 0.10 TCGA-44-7662-01 11 117100470 117100470 G T PCSK7 Missense_Mutation p.L31M 0.27 tolerated_low_confidence(0.13) benign(0.062) TCGA-44-7662-01 11 117299019 117299019 G T DSCAML1 3'UTR 0.12 TCGA-44-7662-01 11 118279722 118279722 T A ATP5L Missense_Mutation p.V74E 0.06 tolerated(0.08) benign(0.189) TCGA-44-7662-01 11 118983228 118983228 C T C2CD2L Missense_Mutation p.S374F 0.05 tolerated(0.29) possibly_damaging(0.495) TCGA-44-7662-01 11 119002578 119002578 G T HINFP Nonsense_Mutation p.E188* 0.29 TCGA-44-7662-01 11 119549368 119549368 T A PVRL1 Missense_Mutation p.T63S 0.17 tolerated(0.88) benign(0.143) TCGA-44-7662-01 11 120996267 120996267 G A TECTA Missense_Mutation p.G487E 0.04 deleterious(0) probably_damaging(0.999) TCGA-44-7662-01 11 122738173 122738173 A G CRTAM Missense_Mutation p.T292A 0.12 deleterious(0.05) possibly_damaging(0.556) TCGA-44-7662-01 11 123480527 123480527 A C GRAMD1B Missense_Mutation p.K418T 0.14 tolerated(0.35) possibly_damaging(0.521) TCGA-44-7662-01 11 123777145 123777145 G T OR8D4 Missense_Mutation p.V3L 0.24 tolerated(0.4) benign(0) TCGA-44-7662-01 11 123810867 123810867 C A OR4D5 Missense_Mutation p.P182T 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-44-7662-01 11 125359327 125359327 C A FEZ1 Intron 0.08 TCGA-44-7662-01 11 1267460 1267460 G A MUC5B Missense_Mutation p.R3117K 0.19 unknown(0) TCGA-44-7662-01 11 128839516 128839516 C T ARHGAP32 Silent p.P1850P 0.10 TCGA-44-7662-01 11 133792462 133792462 A T IGSF9B Splice_Site p.X761_splice 0.11 TCGA-44-7662-01 11 16208425 16208425 C A SOX6 Missense_Mutation p.Q204H 0.35 deleterious(0.01) probably_damaging(0.926) TCGA-44-7662-01 11 1908785 1908785 G T LSP1 Missense_Mutation p.A466S 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.718) TCGA-44-7662-01 11 20622838 20622838 C T SLC6A5 Missense_Mutation p.S56F 0.29 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-44-7662-01 11 20907087 20907087 G T NELL1 Splice_Site p.X201_splice 0.24 TCGA-44-7662-01 11 2154386 2154386 C A IGF2 Missense_Mutation p.R181L 0.26 deleterious(0) probably_damaging(1) TCGA-44-7662-01 11 30557678 30557678 G A MPPED2 Missense_Mutation p.T58M 0.10 tolerated(0.09) probably_damaging(1) TCGA-44-7662-01 11 34173997 34173997 C T ABTB2 Silent p.L1005L 0.44 TCGA-44-7662-01 11 45268061 45268061 C T SYT13 Silent p.E283E 0.17 TCGA-44-7662-01 11 46406966 46406966 G T CHRM4 Missense_Mutation p.A381D 0.07 tolerated(0.15) benign(0.243) TCGA-44-7662-01 11 46918425 46918425 T C LRP4 Missense_Mutation p.N306S 0.10 tolerated(0.78) benign(0.003) TCGA-44-7662-01 11 51411594 51411594 T C OR4A5 Missense_Mutation p.M268V 0.12 tolerated_low_confidence(0.69) benign(0.004) TCGA-44-7662-01 11 5221326 5221326 C A OR51V1 Missense_Mutation p.R202L 0.30 deleterious(0.01) possibly_damaging(0.863) TCGA-44-7662-01 11 55322549 55322549 G T OR4C15 Missense_Mutation p.S256I 0.12 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-44-7662-01 11 55541528 55541528 C A OR5D13 Silent p.A205A 0.14 TCGA-44-7662-01 11 56344535 56344535 A C OR5M10 Missense_Mutation p.I221M 0.07 deleterious(0) probably_damaging(0.976) TCGA-44-7662-01 11 56468325 56468325 C A OR9G1 Missense_Mutation p.N154K 0.06 deleterious(0) possibly_damaging(0.517) TCGA-44-7662-01 11 57003659 57003659 C T APLNR Missense_Mutation p.G274S 0.36 tolerated(0.45) benign(0.017) TCGA-44-7662-01 11 58126193 58126193 G T OR5B17 Missense_Mutation p.A117D 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-7662-01 11 5841791 5841791 T A OR52N2 Missense_Mutation p.C76S 0.24 tolerated(1) probably_damaging(0.94) TCGA-44-7662-01 11 59245091 59245091 C A OR4D10 Silent p.L63L 0.30 TCGA-44-7662-01 11 61295529 61295529 C A SYT7 Missense_Mutation p.Q235H 0.43 deleterious(0.01) possibly_damaging(0.792) TCGA-44-7662-01 11 61898026 61898026 A T INCENP Missense_Mutation p.T343S 0.11 tolerated(0.15) unknown(0) TCGA-44-7662-01 11 62288392 62288392 T C AHNAK Silent p.E4499E 0.11 TCGA-44-7662-01 11 62294707 62294707 G T AHNAK Missense_Mutation p.H2394Q 0.42 benign(0.015) TCGA-44-7662-01 11 62446030 62446030 C G UBXN1 Missense_Mutation p.E53Q 0.05 tolerated(0.59) benign(0.118) TCGA-44-7662-01 11 65387893 65387893 G A PCNXL3 Missense_Mutation p.G698R 0.32 tolerated(0.51) benign(0.008) TCGA-44-7662-01 11 66050994 66050994 T G CNIH2 Intron 0.24 TCGA-44-7662-01 11 66191660 66191660 C G NPAS4 Silent p.G433G 0.32 TCGA-44-7662-01 11 66276549 66276549 G T DPP3 Splice_Site p.X681_splice 0.10 TCGA-44-7662-01 11 73768561 73768561 C A C2CD3 Silent p.S1660S 0.12 TCGA-44-7662-01 11 76174925 76174925 G T C11orf30 Missense_Mutation p.S211I 0.39 deleterious(0) possibly_damaging(0.775) TCGA-44-7662-01 11 78369392 78369392 C A TENM4 Missense_Mutation p.C2674F 0.46 tolerated(0.41) benign(0.027) TCGA-44-7662-01 11 82877481 82877481 G T PCF11 Silent p.S514S 0.24 TCGA-44-7662-01 11 838021 838021 G T CD151 Missense_Mutation p.C232F 0.23 tolerated(0.13) benign(0.049) TCGA-44-7662-01 11 88911891 88911891 C A TYR Missense_Mutation p.P257H 0.25 deleterious(0.01) probably_damaging(0.971) TCGA-44-7662-01 11 92086401 92086401 A T FAT3 Nonsense_Mutation p.R375* 0.24 TCGA-44-7662-01 11 92523266 92523266 A T FAT3 Missense_Mutation p.H1498L 0.19 possibly_damaging(0.626) TCGA-44-7662-01 11 92531031 92531031 C A FAT3 Missense_Mutation p.P1618T 0.16 probably_damaging(0.983) TCGA-44-7662-01 11 92616355 92616355 T A FAT3 Missense_Mutation p.S4245T 0.19 benign(0.025) TCGA-44-7662-01 12 100042361 100042361 C G FAM71C Missense_Mutation p.Q137E 0.26 deleterious(0) possibly_damaging(0.824) TCGA-44-7662-01 12 104071263 104071263 C A STAB2 Missense_Mutation p.H893Q 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-44-7662-01 12 11091224 11091224 G A TAS2R14 Silent p.L195L 0.35 TCGA-44-7662-01 12 117768676 117768676 C T NOS1 Missense_Mutation p.V67I 0.41 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-44-7662-01 12 20893164 20893164 G T SLCO1C1 Missense_Mutation p.G532V 0.26 deleterious(0.03) benign(0.378) TCGA-44-7662-01 12 20893173 20893173 C T SLCO1C1 Missense_Mutation p.S535L 0.27 deleterious(0.01) possibly_damaging(0.772) TCGA-44-7662-01 12 21680124 21680124 C T C12orf39 Missense_Mutation p.A48V 0.37 deleterious(0.01) probably_damaging(0.997) TCGA-44-7662-01 12 47629773 47629773 C A PCED1B Silent p.R309R 0.32 TCGA-44-7662-01 12 49398789 49398789 T A PRKAG1 Missense_Mutation p.Q132L 0.37 deleterious(0.02) benign(0.006) TCGA-44-7662-01 12 5853336 5853336 G T ANO2 Missense_Mutation p.F442L 0.27 deleterious(0.02) probably_damaging(0.994) TCGA-44-7662-01 12 6942764 6942764 G C LEPREL2 Missense_Mutation p.W406C 0.07 deleterious(0) probably_damaging(0.971) TCGA-44-7662-01 12 72290500 72290500 T C TBC1D15 Missense_Mutation p.L360P 0.30 deleterious(0) probably_damaging(1) TCGA-44-7662-01 12 72355410 72355410 C T TPH2 Intron 0.27 TCGA-44-7662-01 12 7842431 7842431 G T GDF3 3'UTR 0.30 TCGA-44-7662-01 12 78516179 78516179 G T NAV3 Silent p.T1403T 0.30 TCGA-44-7662-01 12 81112714 81112714 G T MYF5 Nonsense_Mutation p.E218* 0.30 TCGA-44-7662-01 12 81112716 81112716 G T MYF5 Missense_Mutation p.E218D 0.31 tolerated(0.5) benign(0.003) TCGA-44-7662-01 12 85277694 85277694 C G SLC6A15 Missense_Mutation p.A234P 0.28 tolerated(0.09) possibly_damaging(0.661) TCGA-44-7662-01 12 95650954 95650954 C T VEZT Missense_Mutation p.T66I 0.32 tolerated(0.29) benign(0.005) TCGA-44-7662-01 12 99640545 99640545 G A ANKS1B Silent p.S618S 0.11 TCGA-44-7662-01 13 100193814 100193814 A G TM9SF2 Missense_Mutation p.I304V 0.33 deleterious(0.01) possibly_damaging(0.728) TCGA-44-7662-01 13 101755671 101755671 C A NALCN Missense_Mutation p.C970F 0.25 tolerated(0.18) benign(0.099) TCGA-44-7662-01 13 106118662 106118662 G A DAOA Missense_Mutation p.D9N 0.24 tolerated_low_confidence(0.34) possibly_damaging(0.728) TCGA-44-7662-01 13 106142289 106142289 G T DAOA Missense_Mutation p.M107I 0.22 tolerated_low_confidence(0.17) benign(0.043) TCGA-44-7662-01 13 33692207 33692207 T C STARD13 Missense_Mutation p.Y759C 0.37 deleterious(0) probably_damaging(0.992) TCGA-44-7662-01 13 72014774 72014775 - A DACH1 3'UTR 0.24 TCGA-44-7662-01 13 99534187 99534187 G A DOCK9 Silent p.L878L 0.33 TCGA-44-7662-01 13 99537313 99537313 C T DOCK9 Missense_Mutation p.G765E 0.41 deleterious(0.01) probably_damaging(1) TCGA-44-7662-01 14 102028736 102028736 C G DIO3 Silent p.P301P 0.22 TCGA-44-7662-01 14 106054725 106054725 G T IGHA2 Missense_Mutation p.P3Q 0.14 tolerated(0.12) possibly_damaging(0.502) TCGA-44-7662-01 14 106321254 106321254 C T IGHM Silent p.L245L 0.28 TCGA-44-7662-01 14 106494372 106494372 G T IGHV2-5 Silent p.T40T 0.25 TCGA-44-7662-01 14 107211181 107211181 G C IGHV3-73 Silent p.S36S 0.20 TCGA-44-7662-01 14 21542500 21542500 A T ARHGEF40 Missense_Mutation p.E204V 0.25 deleterious(0) probably_damaging(0.977) TCGA-44-7662-01 14 21769217 21769217 G T RPGRIP1 Missense_Mutation p.G104V 0.14 tolerated(0.28) benign(0.001) TCGA-44-7662-01 14 22133475 22133475 A T OR4E2 Missense_Mutation p.Y60F 0.24 deleterious(0.01) benign(0.228) TCGA-44-7662-01 14 22251630 22251630 C G TRAV7 Missense_Mutation p.L83V 0.18 tolerated(0.1) possibly_damaging(0.656) TCGA-44-7662-01 14 22934742 22934742 A T TRDC 3'UTR 0.17 TCGA-44-7662-01 14 23511514 23511514 G C PSMB11 Missense_Mutation p.W27S 0.05 deleterious(0.05) benign(0.068) TCGA-44-7662-01 14 23511515 23511515 G T PSMB11 Missense_Mutation p.W27C 0.05 tolerated(0.08) possibly_damaging(0.894) TCGA-44-7662-01 14 23866757 23866757 G T MYH6 Missense_Mutation p.H653N 0.12 deleterious(0.03) benign(0.426) TCGA-44-7662-01 14 23876424 23876424 A G MYH6 Silent p.D3D 0.12 TCGA-44-7662-01 14 42356834 42356834 G T LRFN5 Missense_Mutation p.V336L 0.20 tolerated(0.17) benign(0.147) TCGA-44-7662-01 14 45475342 45475342 A G FAM179B Missense_Mutation p.K926E 0.10 tolerated(0.13) benign(0.138) TCGA-44-7662-01 14 45535891 45535891 G A FAM179B Missense_Mutation p.R1504H 0.07 deleterious(0) probably_damaging(0.996) TCGA-44-7662-01 14 45605157 45605157 G A FANCM 5'UTR 0.19 TCGA-44-7662-01 14 45645568 45645568 G T FANCM Missense_Mutation p.R1204L 0.16 tolerated(0.41) benign(0.001) TCGA-44-7662-01 14 59112433 59112433 T A DACT1 Silent p.A364A 0.30 TCGA-44-7662-01 14 64957115 64957115 G C ZBTB25 Missense_Mutation p.S46C 0.15 deleterious(0) probably_damaging(1) TCGA-44-7662-01 14 69925101 69925101 G C SLC39A9 Missense_Mutation p.E239Q 0.03 tolerated(0.07) benign(0.026) TCGA-44-7662-01 14 72976888 72976888 A C RGS6 Missense_Mutation p.K331T 0.10 deleterious(0.02) benign(0.134) TCGA-44-7662-01 14 74206049 74206049 G A ELMSAN1 Silent p.F221F 0.09 TCGA-44-7662-01 14 77245364 77245364 C A VASH1 3'UTR 0.08 TCGA-44-7662-01 14 77492113 77492113 G C IRF2BPL Missense_Mutation p.R675G 0.18 deleterious(0.02) unknown(0) TCGA-44-7662-01 14 77723079 77723079 G C TMEM63C 3'UTR 0.19 TCGA-44-7662-01 14 77942393 77942393 G T ISM2 Missense_Mutation p.Q421K 0.27 tolerated(0.46) possibly_damaging(0.621) TCGA-44-7662-01 14 90651010 90651010 G T KCNK13 Missense_Mutation p.G297V 0.15 tolerated(0.5) benign(0.028) TCGA-44-7662-01 14 94847330 94847330 C T SERPINA1 Silent p.L265L 0.11 TCGA-44-7662-01 14 96152829 96152829 C A TCL1B Missense_Mutation p.L9I 0.17 tolerated(0.14) benign(0.223) TCGA-44-7662-01 14 97022202 97022202 A T PAPOLA Silent p.P561P 0.08 TCGA-44-7662-01 15 20169985 20169985 C A IGHV1OR15-9 Missense_Mutation p.G96V 0.32 deleterious(0) benign(0.066) TCGA-44-7662-01 15 31359339 31359339 C A TRPM1 Missense_Mutation p.R199I 0.14 tolerated(0.08) probably_damaging(0.969) TCGA-44-7662-01 15 33603268 33603268 G T RYR3 Missense_Mutation p.G8C 0.29 possibly_damaging(0.75) TCGA-44-7662-01 15 33603269 33603269 G T RYR3 Missense_Mutation p.G8V 0.26 benign(0.017) TCGA-44-7662-01 15 34130564 34130564 G A RYR3 Missense_Mutation p.G4128D 0.32 benign(0) TCGA-44-7662-01 15 38632064 38632064 A G SPRED1 Missense_Mutation p.R184G 0.27 tolerated(0.13) benign(0.165) TCGA-44-7662-01 15 40846166 40846166 T C C15orf57 3'UTR 0.28 TCGA-44-7662-01 15 41377671 41377671 C T INO80 Missense_Mutation p.D257N 0.09 tolerated(0.18) probably_damaging(0.935) TCGA-44-7662-01 15 43446871 43446871 G A TMEM62 Missense_Mutation p.V342I 0.14 tolerated(0.81) benign(0.011) TCGA-44-7662-01 15 52401836 52401836 G A BCL2L10 3'UTR 0.38 TCGA-44-7662-01 15 52905960 52905960 T A FAM214A Silent p.V37V 0.12 TCGA-44-7662-01 15 53809911 53809911 G A WDR72 Silent p.P1098P 0.18 TCGA-44-7662-01 15 74043389 74043389 C T C15orf59 Missense_Mutation p.R28H 0.12 tolerated(0.39) probably_damaging(0.998) TCGA-44-7662-01 15 79186527 79186527 C - MORF4L1 Frame_Shift_Del p.M293Cfs*11 0.26 TCGA-44-7662-01 15 83790720 83790720 T A TM6SF1 Missense_Mutation p.M149K 0.21 deleterious(0.01) benign(0.075) TCGA-44-7662-01 16 20370884 20370884 C G PDILT Missense_Mutation p.L504F 0.13 tolerated(0.43) benign(0.02) TCGA-44-7662-01 16 2160655 2160655 C A PKD1 Missense_Mutation p.G1505C 0.41 probably_damaging(0.999) TCGA-44-7662-01 16 22926316 22926316 C A HS3ST2 Silent p.P179P 0.39 TCGA-44-7662-01 16 24372682 24372682 A T CACNG3 Missense_Mutation p.N149I 0.20 deleterious(0.02) probably_damaging(1) TCGA-44-7662-01 16 30505533 30505533 G T ITGAL Missense_Mutation p.G405V 0.27 deleterious(0) probably_damaging(0.991) TCGA-44-7662-01 16 30793054 30793054 T A ZNF629 Silent p.P865P 0.21 TCGA-44-7662-01 16 3119310 3119310 A T IL32 Missense_Mutation p.E174V 0.06 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-44-7662-01 16 31283197 31283197 C G ITGAM Missense_Mutation p.F196L 0.26 tolerated(0.33) probably_damaging(0.993) TCGA-44-7662-01 16 3139379 3139379 C A ZSCAN10 Missense_Mutation p.G631C 0.14 deleterious(0) probably_damaging(1) TCGA-44-7662-01 16 3140317 3140317 C A ZSCAN10 Missense_Mutation p.G318V 0.10 tolerated(0.19) benign(0.055) TCGA-44-7662-01 16 31404671 31404671 G T ITGAD 5'UTR 0.16 TCGA-44-7662-01 16 31408773 31408773 C G ITGAD Missense_Mutation p.I77M 0.15 deleterious(0) possibly_damaging(0.876) TCGA-44-7662-01 16 3339416 3339416 G A ZNF263 Missense_Mutation p.E304K 0.17 tolerated(0.08) benign(0.018) TCGA-44-7662-01 16 48250146 48250146 T C ABCC11 Missense_Mutation p.Y277C 0.15 deleterious(0.01) probably_damaging(0.967) TCGA-44-7662-01 16 49671294 49671294 T C ZNF423 Missense_Mutation p.N590S 0.20 deleterious(0.05) possibly_damaging(0.573) TCGA-44-7662-01 16 55909058 55909058 C A CES5A Intron 0.23 TCGA-44-7662-01 16 56913528 56913528 G T SLC12A3 Silent p.L470L 0.07 TCGA-44-7662-01 16 624190 624190 C G PIGQ Missense_Mutation p.P39R 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-7662-01 16 66997479 66997479 C G CES3 Missense_Mutation p.L125V 0.10 deleterious(0) probably_damaging(0.999) TCGA-44-7662-01 16 67232111 67232111 A G E2F4 3'UTR 0.21 TCGA-44-7662-01 16 70778352 70778352 C A VAC14 Missense_Mutation p.G501V 0.17 tolerated(0.36) benign(0) TCGA-44-7662-01 16 84212974 84212974 C A TAF1C Missense_Mutation p.R728L 0.45 tolerated(0.06) benign(0.016) TCGA-44-7662-01 16 89712461 89712461 C A CHMP1A 3'UTR 0.19 TCGA-44-7662-01 16 8999176 8999176 C G USP7 Missense_Mutation p.D481H 0.16 deleterious(0) probably_damaging(0.999) TCGA-44-7662-01 17 10354208 10354208 C A MYH4 Missense_Mutation p.E1290D 0.33 deleterious(0.05) probably_damaging(0.916) TCGA-44-7662-01 17 10409131 10409131 C A MYH1 Missense_Mutation p.Q724H 0.31 deleterious(0) benign(0.011) TCGA-44-7662-01 17 11772454 11772454 C T DNAH9 Missense_Mutation p.L3313F 0.24 probably_damaging(0.997) TCGA-44-7662-01 17 26982498 26982498 C A SDF2 Missense_Mutation p.S52I 0.22 deleterious(0) benign(0.235) TCGA-44-7662-01 17 27944550 27944550 T A CORO6 Missense_Mutation p.M241L 0.28 tolerated(0.13) benign(0.002) TCGA-44-7662-01 17 28544217 28544217 G A SLC6A4 Silent p.F268F 0.21 TCGA-44-7662-01 17 29854858 29854858 A G RAB11FIP4 Splice_Site p.X425_splice 0.27 TCGA-44-7662-01 17 32685152 32685152 C A CCL13 3'UTR 0.23 TCGA-44-7662-01 17 33469093 33469093 C A NLE1 Missense_Mutation p.D23Y 0.28 deleterious(0.01) probably_damaging(0.928) TCGA-44-7662-01 17 34171540 34171540 G A TAF15 Missense_Mutation p.G413R 0.25 tolerated_low_confidence(0.09) unknown(0) TCGA-44-7662-01 17 35745728 35745728 C A C17orf78 Missense_Mutation p.P211H 0.25 deleterious(0) probably_damaging(0.961) TCGA-44-7662-01 17 36359023 36359023 G T RP11-1407O15.2 Missense_Mutation p.P223Q 0.06 TCGA-44-7662-01 17 39597091 39597091 A G KRT38 Missense_Mutation p.I28T 0.16 tolerated(0.68) benign(0.001) TCGA-44-7662-01 17 40174504 40174504 A G NKIRAS2 Missense_Mutation p.D61G 0.15 deleterious(0) probably_damaging(0.998) TCGA-44-7662-01 17 40690377 40690377 G C NAGLU Silent p.L184L 0.07 TCGA-44-7662-01 17 41738734 41738734 C A MEOX1 Missense_Mutation p.A57S 0.34 tolerated(0.16) benign(0.016) TCGA-44-7662-01 17 41926217 41926217 G A CD300LG Missense_Mutation p.R112Q 0.18 deleterious(0) possibly_damaging(0.538) TCGA-44-7662-01 17 42745405 42745405 T A C17orf104 Nonsense_Mutation p.L709* 0.36 TCGA-44-7662-01 17 42930740 42930740 C G EFTUD2 Missense_Mutation p.E829Q 0.23 deleterious(0) probably_damaging(1) TCGA-44-7662-01 17 43112310 43112310 G A DCAKD 5'UTR 0.21 TCGA-44-7662-01 17 43192477 43192477 G C PLCD3 Missense_Mutation p.L565V 0.15 deleterious(0.01) possibly_damaging(0.749) TCGA-44-7662-01 17 45822141 45822141 C A TBX21 Silent p.I339I 0.20 TCGA-44-7662-01 17 47074962 47074962 G T IGF2BP1 5'UTR 0.23 TCGA-44-7662-01 17 47590379 47590379 C A NGFR 3'UTR 0.20 TCGA-44-7662-01 17 48594812 48594812 C A MYCBPAP Silent p.S164S 0.28 TCGA-44-7662-01 17 48916967 48916967 C A WFIKKN2 Silent p.P106P 0.24 TCGA-44-7662-01 17 56355306 56355306 C A MPO Silent p.L362L 0.12 TCGA-44-7662-01 17 58290960 58290960 G T USP32 Missense_Mutation p.Q696K 0.11 tolerated(0.09) possibly_damaging(0.824) TCGA-44-7662-01 17 61557855 61557855 C A ACE Silent p.I271I 0.18 TCGA-44-7662-01 17 61957912 61957912 C T GH2 Missense_Mutation p.A226T 0.18 deleterious_low_confidence(0) possibly_damaging(0.821) TCGA-44-7662-01 17 62041161 62041161 C A SCN4A Missense_Mutation p.G493C 0.42 deleterious(0.04) benign(0.002) TCGA-44-7662-01 17 62131673 62131673 G T ERN1 Nonsense_Mutation p.C630* 0.17 TCGA-44-7662-01 17 65103393 65103393 C A HELZ Missense_Mutation p.Q1711H 0.13 deleterious_low_confidence(0) unknown(0) TCGA-44-7662-01 17 66267221 66267221 G T SLC16A6 Nonsense_Mutation p.Y360* 0.26 TCGA-44-7662-01 17 70120530 70120530 G A SOX9 3'UTR 0.24 TCGA-44-7662-01 17 71282496 71282496 C T CDC42EP4 Silent p.G48G 0.10 TCGA-44-7662-01 17 72308204 72308204 G T DNAI2 Silent p.L519L 0.10 TCGA-44-7662-01 17 72341016 72341016 G T KIF19 Silent p.R233R 0.26 TCGA-44-7662-01 17 74003663 74003663 C T EVPL Missense_Mutation p.E1875K 0.08 deleterious(0.05) probably_damaging(0.999) TCGA-44-7662-01 17 7579485 7579485 C A TP53 Nonsense_Mutation p.E68* 0.37 TCGA-44-7662-01 17 79408995 79408995 C G RP11-1055B8.7 Missense_Mutation p.S207C 0.07 benign(0.247) TCGA-44-7662-01 18 13645348 13645348 G T LDLRAD4 Missense_Mutation p.V205L 0.12 deleterious(0) probably_damaging(0.994) TCGA-44-7662-01 18 22056937 22056937 T C HRH4 Missense_Mutation p.M195T 0.19 deleterious(0.02) benign(0.027) TCGA-44-7662-01 18 25591899 25591899 G A CDH2 Missense_Mutation p.H153Y 0.10 tolerated(0.39) benign(0.001) TCGA-44-7662-01 18 25591900 25591900 G T CDH2 Silent p.G152G 0.09 TCGA-44-7662-01 18 28648052 28648052 C G DSC2 Missense_Mutation p.D879H 0.12 deleterious(0) probably_damaging(0.984) TCGA-44-7662-01 18 28723737 28723738 - T DSC1 Frame_Shift_Ins p.L320Vfs*17 0.15 TCGA-44-7662-01 18 2891640 2891640 C A EMILIN2 Silent p.L505L 0.11 TCGA-44-7662-01 18 29049188 29049188 C T DSG3 Silent p.N591N 0.17 TCGA-44-7662-01 18 30349625 30349625 C A KLHL14 Missense_Mutation p.R310S 0.13 tolerated(0.15) benign(0.191) TCGA-44-7662-01 18 3879681 3879681 G T DLGAP1 Missense_Mutation p.H130N 0.25 deleterious(0.04) benign(0.092) TCGA-44-7662-01 18 43531136 43531136 T G EPG5 Missense_Mutation p.M441L 0.12 tolerated(0.08) possibly_damaging(0.455) TCGA-44-7662-01 18 44336399 44336399 C A ST8SIA5 Missense_Mutation p.A25S 0.09 benign(0.124) TCGA-44-7662-01 18 56246487 56246487 C A ALPK2 Silent p.G507G 0.13 TCGA-44-7662-01 18 56606832 56606832 G T ZNF532 Missense_Mutation p.G895V 0.20 deleterious(0.02) probably_damaging(0.983) TCGA-44-7662-01 18 61264493 61264493 G T SERPINB13 Missense_Mutation p.A358S 0.12 tolerated(0.43) possibly_damaging(0.793) TCGA-44-7662-01 18 6978258 6978258 G T LAMA1 Missense_Mutation p.L2043M 0.10 deleterious(0.02) probably_damaging(0.996) TCGA-44-7662-01 18 70502500 70502500 G C NETO1 Intron 0.21 TCGA-44-7662-01 18 74680239 74680239 G T ZNF236 Nonsense_Mutation p.E1828* 0.16 TCGA-44-7662-01 19 13386728 13386728 G T CACNA1A Missense_Mutation p.R1309S 0.36 benign(0.048) TCGA-44-7662-01 19 23405513 23405513 C A ZNF724P Missense_Mutation p.G512C 0.38 deleterious(0) probably_damaging(0.999) TCGA-44-7662-01 19 34180198 34180198 G A CHST8 Missense_Mutation p.A11T 0.22 tolerated(0.36) benign(0.002) TCGA-44-7662-01 19 36033839 36033839 T C GAPDHS Intron 0.34 TCGA-44-7662-01 19 36321981 36321981 G A NPHS1 Missense_Mutation p.T1152M 0.35 tolerated(0.26) benign(0.014) TCGA-44-7662-01 19 36357407 36357407 G TT KIRREL2 3'UTR 0.19 TCGA-44-7662-01 19 37644259 37644259 A G ZNF585A Missense_Mutation p.M126T 0.16 tolerated(1) benign(0) TCGA-44-7662-01 19 3779573 3779573 G A MATK Silent p.I296I 0.39 TCGA-44-7662-01 19 38948812 38948812 G A RYR1 Missense_Mutation p.V683M 0.32 probably_damaging(0.999) TCGA-44-7662-01 19 41847918 41847918 G A TGFB1 Nonsense_Mutation p.R244* 0.19 TCGA-44-7662-01 19 42471895 42471895 C A ATP1A3 Missense_Mutation p.G960V 0.37 deleterious(0) probably_damaging(0.948) TCGA-44-7662-01 19 43523194 43523194 G A PSG11 Missense_Mutation p.T146I 0.30 tolerated(0.09) benign(0.235) TCGA-44-7662-01 19 4817343 4817343 G C TICAM1 Missense_Mutation p.C349W 0.33 tolerated(0.18) benign(0.293) TCGA-44-7662-01 19 49994189 49994189 A G RPL13A Intron 0.16 TCGA-44-7662-01 19 50098435 50098435 C T PRR12 Silent p.A281A 0.39 TCGA-44-7662-01 19 50099244 50099244 G T PRR12 Missense_Mutation p.S551I 0.15 possibly_damaging(0.607) TCGA-44-7662-01 19 50099917 50099917 G T PRR12 Missense_Mutation p.Q775H 0.12 benign(0.387) TCGA-44-7662-01 19 51135968 51135968 C A SYT3 Missense_Mutation p.W83C 0.16 deleterious(0) probably_damaging(0.997) TCGA-44-7662-01 19 54313064 54313064 A G NLRP12 Silent p.L617L 0.34 TCGA-44-7662-01 19 54705015 54705015 C G RPS9 Intron 0.15 TCGA-44-7662-01 19 55401191 55401191 G A FCAR Missense_Mutation p.G276R 0.20 tolerated(0.14) possibly_damaging(0.741) TCGA-44-7662-01 19 57648337 57648337 G T ZIM3 Missense_Mutation p.Q49K 0.29 tolerated(0.25) benign(0.002) TCGA-44-7662-01 19 58966598 58966598 G C ZNF324B Missense_Mutation p.R96P 0.33 tolerated(0.28) benign(0) TCGA-44-7662-01 19 7742570 7742570 C T C19orf59 Nonsense_Mutation p.Q48* 0.27 TCGA-44-7662-01 19 8670029 8670029 G T ADAMTS10 Missense_Mutation p.H101Q 0.18 tolerated(0.17) benign(0.351) TCGA-44-7662-01 19 9046473 9046473 C - MUC16 Frame_Shift_Del p.A11720Pfs*13 0.25 TCGA-44-7662-01 19 9046547 9046547 G T MUC16 Missense_Mutation p.P11695Q 0.37 possibly_damaging(0.506) TCGA-44-7662-01 19 9086904 9086904 C T MUC16 Silent p.G1637G 0.34 TCGA-44-7662-01 19 9087356 9087357 - A MUC16 Frame_Shift_Ins p.A1487Cfs*12 0.25 TCGA-44-7662-01 1 108728465 108728465 C A SLC25A24 Missense_Mutation p.D99Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-44-7662-01 1 109743477 109743477 C A KIAA1324 Silent p.T976T 0.07 TCGA-44-7662-01 1 110280799 110280799 C T GSTM3 Missense_Mutation p.E96K 0.12 tolerated(0.14) benign(0.026) TCGA-44-7662-01 1 110655635 110655635 G T UBL4B Missense_Mutation p.S160I 0.16 tolerated_low_confidence(0.21) benign(0.068) TCGA-44-7662-01 1 110737302 110737302 C T SLC6A17 Silent p.I467I 0.15 TCGA-44-7662-01 1 110883936 110883936 G T RBM15 Missense_Mutation p.D637Y 0.23 deleterious(0) probably_damaging(0.956) TCGA-44-7662-01 1 117492063 117492063 G T PTGFRN Missense_Mutation p.R361L 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-44-7662-01 1 117568211 117568211 G A CD101 Missense_Mutation p.E837K 0.10 tolerated(0.16) benign(0.06) TCGA-44-7662-01 1 120437773 120437773 C T ADAM30 Missense_Mutation p.G396D 0.08 tolerated(0.67) benign(0.003) TCGA-44-7662-01 1 12888430 12888430 T C PRAMEF11 Missense_Mutation p.M32V 0.20 tolerated(0.27) benign(0.007) TCGA-44-7662-01 1 144859821 144859821 G A PDE4DIP Missense_Mutation p.S2088F 0.12 tolerated(0.23) possibly_damaging(0.459) TCGA-44-7662-01 1 150432716 150432716 T G RPRD2 Missense_Mutation p.L445W 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-7662-01 1 151236486 151236486 G T PSMD4 Silent p.T88T 0.19 TCGA-44-7662-01 1 152082377 152082377 G C TCHH Missense_Mutation p.R1106G 0.17 unknown(0) TCGA-44-7662-01 1 152281931 152281931 C G FLG Missense_Mutation p.D1811H 0.05 possibly_damaging(0.861) TCGA-44-7662-01 1 152325946 152325946 C A FLG2 Missense_Mutation p.R1439I 0.29 benign(0.008) TCGA-44-7662-01 1 152327665 152327665 C T FLG2 Missense_Mutation p.G866E 0.24 unknown(0) TCGA-44-7662-01 1 152636817 152636817 G T LCE2D Missense_Mutation p.R79L 0.27 tolerated_low_confidence(0.59) unknown(0) TCGA-44-7662-01 1 152732605 152732605 C A KPRP Missense_Mutation p.Q181K 0.25 deleterious(0.04) benign(0.406) TCGA-44-7662-01 1 153279556 153279556 G T PGLYRP3 Nonsense_Mutation p.C81* 0.14 TCGA-44-7662-01 1 154201188 154201188 G T UBAP2L Missense_Mutation p.G89V 0.10 deleterious(0) unknown(0) TCGA-44-7662-01 1 154313336 154313336 G T ATP8B2 Missense_Mutation p.E380D 0.29 deleterious(0) possibly_damaging(0.517) TCGA-44-7662-01 1 154920756 154920756 C T PBXIP1 Missense_Mutation p.E166K 0.37 tolerated(0.45) benign(0.027) TCGA-44-7662-01 1 155106462 155106462 C A EFNA1 Silent p.I179I 0.26 TCGA-44-7662-01 1 155851068 155851068 G C SYT11 Missense_Mutation p.L355F 0.24 tolerated(0.11) probably_damaging(1) TCGA-44-7662-01 1 158151905 158151905 G T CD1D Nonsense_Mutation p.G138* 0.21 TCGA-44-7662-01 1 158606521 158606521 G A SPTA1 Silent p.D1740D 0.27 TCGA-44-7662-01 1 159163811 159163811 T A CADM3 Silent p.S258S 0.07 TCGA-44-7662-01 1 159409749 159409749 C A OR10J1 Missense_Mutation p.H67Q 0.26 deleterious(0.04) benign(0.092) TCGA-44-7662-01 1 160249886 160249886 C A PEX19 Nonsense_Mutation p.E249* 0.31 TCGA-44-7662-01 1 160314522 160314522 G T NCSTN Missense_Mutation p.R32S 0.20 tolerated(0.77) benign(0.001) TCGA-44-7662-01 1 163044422 163044422 C A RGS4 3'UTR 0.30 TCGA-44-7662-01 1 165514132 165514132 T A LRRC52 Missense_Mutation p.I200K 0.20 tolerated(0.62) benign(0.021) TCGA-44-7662-01 1 171252285 171252285 G T FMO1 Missense_Mutation p.V396L 0.28 tolerated(1) benign(0.004) TCGA-44-7662-01 1 176526271 176526271 G T PAPPA2 Silent p.R271R 0.26 TCGA-44-7662-01 1 176679280 176679280 G T PAPPA2 Missense_Mutation p.V1207F 0.33 deleterious(0.03) possibly_damaging(0.721) TCGA-44-7662-01 1 176915112 176915112 G C ASTN1 Missense_Mutation p.N733K 0.23 deleterious(0.01) possibly_damaging(0.584) TCGA-44-7662-01 1 177250467 177250467 C G BRINP2 Missense_Mutation p.Q719E 0.13 tolerated(0.06) benign(0.3) TCGA-44-7662-01 1 181741334 181741334 C A CACNA1E Nonsense_Mutation p.Y1702* 0.21 TCGA-44-7662-01 1 183093904 183093904 G C LAMC1 Missense_Mutation p.G847A 0.23 deleterious(0.01) probably_damaging(1) TCGA-44-7662-01 1 186645624 186645624 G T PTGS2 Missense_Mutation p.F315L 0.18 deleterious(0.03) probably_damaging(0.99) TCGA-44-7662-01 1 186645994 186645994 G T PTGS2 Missense_Mutation p.L232I 0.21 deleterious(0.05) benign(0.319) TCGA-44-7662-01 1 192544947 192544947 C G RGS1 Missense_Mutation p.P9A 0.10 tolerated_low_confidence(0.09) benign(0.001) TCGA-44-7662-01 1 201009108 201009108 C G CACNA1S Missense_Mutation p.V1825L 0.21 tolerated_low_confidence(0.18) benign(0.006) TCGA-44-7662-01 1 205210770 205210770 C A TMCC2 Silent p.S115S 0.28 TCGA-44-7662-01 1 212193585 212193585 G C INTS7 Missense_Mutation p.L84V 0.16 deleterious(0) possibly_damaging(0.833) TCGA-44-7662-01 1 215848172 215848172 G T USH2A Missense_Mutation p.P4361T 0.25 probably_damaging(0.99) TCGA-44-7662-01 1 2160515 2160515 G C SKI Missense_Mutation p.V104L 0.27 tolerated(0.41) benign(0.093) TCGA-44-7662-01 1 216465522 216465522 G A USH2A Missense_Mutation p.T612I 0.20 probably_damaging(1) TCGA-44-7662-01 1 232577060 232577060 C A SIPA1L2 Missense_Mutation p.D1207Y 0.20 tolerated(0.1) possibly_damaging(0.823) TCGA-44-7662-01 1 235883977 235883977 C G LYST Missense_Mutation p.D3182H 0.09 deleterious(0.01) benign(0.039) TCGA-44-7662-01 1 236187502 236187502 C A NID1 Missense_Mutation p.D666Y 0.12 deleterious(0.01) possibly_damaging(0.781) TCGA-44-7662-01 1 236908062 236908062 C A ACTN2 Silent p.I464I 0.12 TCGA-44-7662-01 1 237494244 237494244 C A RYR2 Missense_Mutation p.Q79K 0.22 possibly_damaging(0.67) TCGA-44-7662-01 1 237880535 237880535 G A RYR2 Missense_Mutation p.R3454H 0.38 possibly_damaging(0.886) TCGA-44-7662-01 1 238051727 238051727 C A ZP4 Nonsense_Mutation p.G162* 0.23 TCGA-44-7662-01 1 240656527 240656527 G T GREM2 Missense_Mutation p.S83R 0.09 tolerated(0.64) benign(0.003) TCGA-44-7662-01 1 242035504 242035504 A T EXO1 Nonsense_Mutation p.R480* 0.18 TCGA-44-7662-01 1 243327772 243327772 G A CEP170 Missense_Mutation p.R1164C 0.14 deleterious(0) probably_damaging(0.999) TCGA-44-7662-01 1 243652359 243652359 C G SDCCAG8 Missense_Mutation p.L677V 0.09 tolerated(0.59) benign(0.161) TCGA-44-7662-01 1 244574692 244574692 G A ADSS Silent p.L405L 0.10 TCGA-44-7662-01 1 247463969 247463969 C A ZNF496 Missense_Mutation p.R539L 0.10 deleterious(0) probably_damaging(0.909) TCGA-44-7662-01 1 247582226 247582226 G T NLRP3 Missense_Mutation p.G44C 0.13 deleterious(0) probably_damaging(0.996) TCGA-44-7662-01 1 248039487 248039487 T A TRIM58 Missense_Mutation p.L386Q 0.37 deleterious(0.02) probably_damaging(0.998) TCGA-44-7662-01 1 248308625 248308625 T C OR2M5 Missense_Mutation p.M59T 0.09 deleterious(0) possibly_damaging(0.889) TCGA-44-7662-01 1 29030804 29030804 T C GMEB1 Silent p.V287V 0.15 TCGA-44-7662-01 1 32222875 32222875 G A BAI2 5'UTR 0.09 TCGA-44-7662-01 1 3390072 3390072 C G ARHGEF16 Missense_Mutation p.P431A 0.32 deleterious(0) probably_damaging(1) TCGA-44-7662-01 1 34276467 34276467 T A CSMD2 Splice_Site p.X402_splice 0.10 TCGA-44-7662-01 1 35881308 35881308 A T ZMYM4 Silent p.S1434S 0.31 TCGA-44-7662-01 1 36026674 36026674 G T NCDN Missense_Mutation p.A308S 0.18 tolerated(0.06) possibly_damaging(0.697) TCGA-44-7662-01 1 39352280 39352280 T C RHBDL2 Missense_Mutation p.K270E 0.10 deleterious(0.01) benign(0.01) TCGA-44-7662-01 1 42050182 42050182 G T HIVEP3 Missense_Mutation p.P96Q 0.25 probably_damaging(0.994) TCGA-44-7662-01 1 43002166 43002166 A G CCDC30 Missense_Mutation p.E4G 0.14 deleterious(0) probably_damaging(0.999) TCGA-44-7662-01 1 47284562 47284562 A C CYP4B1 3'UTR 0.33 TCGA-44-7662-01 1 51001120 51001120 G A FAF1 Missense_Mutation p.T472I 0.15 tolerated(0.07) benign(0.187) TCGA-44-7662-01 1 53927203 53927203 C A DMRTB1 Missense_Mutation p.S212Y 0.11 deleterious(0.01) possibly_damaging(0.851) TCGA-44-7662-01 1 65119459 65119459 C T CACHD1 Missense_Mutation p.P469L 0.05 deleterious(0) probably_damaging(0.969) TCGA-44-7662-01 1 70904452 70904452 G T CTH Silent p.V378V 0.25 TCGA-44-7662-01 1 75037302 75037302 C T C1orf173 Silent p.E1364E 0.27 TCGA-44-7662-01 1 82417712 82417712 T C LPHN2 Silent p.A556A 0.13 TCGA-44-7662-01 1 82421638 82421638 A G LPHN2 Silent p.Q620Q 0.15 TCGA-44-7662-01 1 85592345 85592345 C A WDR63 Missense_Mutation p.S755Y 0.16 tolerated(1) benign(0.197) TCGA-44-7662-01 1 92200438 92200438 G T TGFBR3 Missense_Mutation p.H155N 0.20 tolerated(0.14) benign(0.199) TCGA-44-7662-01 1 92224265 92224265 G T TGFBR3 Missense_Mutation p.H97N 0.09 deleterious(0.02) benign(0.071) TCGA-44-7662-01 1 92948935 92948935 C G GFI1 Missense_Mutation p.R37P 0.28 tolerated_low_confidence(0.33) benign(0.024) TCGA-44-7662-01 1 94502755 94502755 C A ABCA4 Silent p.T1253T 0.16 TCGA-44-7662-01 1 99156727 99156727 A - SNX7 Frame_Shift_Del p.T154Lfs*2 0.20 TCGA-44-7662-01 1 99161072 99161072 A T SNX7 Splice_Site p.X214_splice 0.28 TCGA-44-7662-01 1 99753654 99753654 C A LPPR4 Missense_Mutation p.A119E 0.24 tolerated(0.05) benign(0.081) TCGA-44-7662-01 20 13782241 13782241 G T NDUFAF5 Missense_Mutation p.G210V 0.26 deleterious(0) probably_damaging(1) TCGA-44-7662-01 20 21687041 21687041 C T PAX1 Intron 0.20 TCGA-44-7662-01 20 23805878 23805878 C T CST2 Missense_Mutation p.C104Y 0.06 deleterious(0) probably_damaging(1) TCGA-44-7662-01 20 35515916 35515916 T C TLDC2 Missense_Mutation p.M166T 0.05 tolerated(0.11) benign(0.068) TCGA-44-7662-01 20 42635233 42635233 C A TOX2 Missense_Mutation p.P71Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-44-7662-01 20 42825709 42825709 C G OSER1 Missense_Mutation p.E288Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-44-7662-01 20 42972100 42972100 C A R3HDML Missense_Mutation p.P155Q 0.24 deleterious(0) probably_damaging(0.973) TCGA-44-7662-01 20 43034773 43034773 G T HNF4A Missense_Mutation p.G64V 0.21 deleterious(0) probably_damaging(0.932) TCGA-44-7662-01 20 43926606 43926606 C G MATN4 Missense_Mutation p.G511R 0.26 benign(0.296) TCGA-44-7662-01 20 45129982 45129982 G A ZNF334 Missense_Mutation p.R666C 0.18 tolerated(0.22) benign(0.019) TCGA-44-7662-01 20 46313316 46313316 G T SULF2 Missense_Mutation p.S249R 0.35 deleterious(0) probably_damaging(0.995) TCGA-44-7662-01 20 47246139 47246139 G A PREX1 Silent p.A1538A 0.10 TCGA-44-7662-01 20 47587797 47587797 G T ARFGEF2 Missense_Mutation p.G444V 0.09 deleterious(0) possibly_damaging(0.728) TCGA-44-7662-01 20 4770300 4770300 C A RASSF2 Missense_Mutation p.R194L 0.14 deleterious(0) probably_damaging(1) TCGA-44-7662-01 20 5294979 5294979 T G PROKR2 Missense_Mutation p.N13H 0.19 tolerated_low_confidence(0.6) benign(0.195) TCGA-44-7662-01 20 54573503 54573503 C A CBLN4 3'UTR 0.29 TCGA-44-7662-01 20 55027161 55027161 C T CASS4 Missense_Mutation p.P310L 0.33 deleterious(0.03) possibly_damaging(0.558) TCGA-44-7662-01 20 57605379 57605379 C T ATP5E Silent p.V46V 0.11 TCGA-44-7662-01 20 57876558 57876558 C A EDN3 Missense_Mutation p.T49N 0.19 tolerated(0.11) benign(0.002) TCGA-44-7662-01 20 58560058 58560058 C T CDH26 Silent p.T237T 0.18 TCGA-44-7662-01 20 61867617 61867617 G T BIRC7 Missense_Mutation p.G57C 0.22 tolerated(0.05) probably_damaging(0.993) TCGA-44-7662-01 20 8609055 8609055 G T PLCB1 Missense_Mutation p.A121S 0.21 tolerated(0.48) benign(0.119) TCGA-44-7662-01 21 10970061 10970061 G T TPTE Missense_Mutation p.P23T 0.10 tolerated_low_confidence(0.52) benign(0.005) TCGA-44-7662-01 21 27071170 27071170 G A JAM2 Missense_Mutation p.M192I 0.18 tolerated(0.48) benign(0.003) TCGA-44-7662-01 21 41561050 41561050 C A DSCAM Missense_Mutation p.E824D 0.29 tolerated(0.54) benign(0.224) TCGA-44-7662-01 22 32614704 32614704 C A SLC5A4 Nonsense_Mutation p.E593* 0.38 TCGA-44-7662-01 22 38333750 38333750 C G MICALL1 Intron 0.42 TCGA-44-7662-01 22 49042449 49042449 C A FAM19A5 Missense_Mutation p.D51E 0.15 deleterious(0.02) probably_damaging(0.932) TCGA-44-7662-01 2 106710386 106710386 C T UXS1 3'UTR 0.24 TCGA-44-7662-01 2 121107445 121107445 G T INHBB Missense_Mutation p.A407S 0.24 tolerated(1) probably_damaging(0.999) TCGA-44-7662-01 2 121747560 121747560 G T GLI2 Missense_Mutation p.G1357V 0.52 deleterious_low_confidence(0.03) benign(0.422) TCGA-44-7662-01 2 125175123 125175123 G T CNTNAP5 Missense_Mutation p.S162I 0.11 tolerated(0.06) benign(0.367) TCGA-44-7662-01 2 12880652 12880652 A G TRIB2 Missense_Mutation p.H255R 0.24 deleterious(0.01) probably_damaging(0.992) TCGA-44-7662-01 2 131883344 131883344 G T PLEKHB2 Missense_Mutation p.W19L 0.19 deleterious(0) probably_damaging(1) TCGA-44-7662-01 2 132558566 132558566 A T C2orf27B 5'UTR 0.13 TCGA-44-7662-01 2 135738894 135738894 G A MAP3K19 Silent p.F1139F 0.07 TCGA-44-7662-01 2 138169421 138169421 C A THSD7B Missense_Mutation p.P980T 0.11 tolerated(0.67) possibly_damaging(0.803) TCGA-44-7662-01 2 141526889 141526889 G A LRP1B Missense_Mutation p.S1884F 0.25 possibly_damaging(0.485) TCGA-44-7662-01 2 141751666 141751666 C A LRP1B Nonsense_Mutation p.G848* 0.04 TCGA-44-7662-01 2 152320091 152320091 G C RIF1 Missense_Mutation p.D1353H 0.24 deleterious(0.02) possibly_damaging(0.519) TCGA-44-7662-01 2 166904134 166904134 C T SCN1A Intron 0.23 TCGA-44-7662-01 2 168726357 168726357 C A B3GALT1 Missense_Mutation p.L270M 0.24 tolerated(0.1) benign(0.417) TCGA-44-7662-01 2 172942530 172942530 T A METAP1D Missense_Mutation p.I237K 0.11 tolerated(0.22) possibly_damaging(0.649) TCGA-44-7662-01 2 174223566 174223566 G T CDCA7 Splice_Site p.X49_splice 0.21 TCGA-44-7662-01 2 176794796 176794796 C G KIAA1715 Missense_Mutation p.E396Q 0.18 tolerated(0.06) benign(0.005) TCGA-44-7662-01 2 17883113 17883113 C A SMC6 Missense_Mutation p.V736L 0.42 tolerated(0.31) benign(0.021) TCGA-44-7662-01 2 179437771 179437771 G T TTN Missense_Mutation p.A24363D 0.13 TCGA-44-7662-01 2 179462456 179462456 C A TTN Missense_Mutation p.G19118V 0.09 TCGA-44-7662-01 2 179543515 179543515 G T TTN Missense_Mutation p.P11262Q 0.17 TCGA-44-7662-01 2 179639156 179639156 G T TTN Missense_Mutation p.P2279T 0.09 TCGA-44-7662-01 2 179647564 179647564 G C TTN Silent p.T1023T 0.13 TCGA-44-7662-01 2 187558970 187558970 C G FAM171B Missense_Mutation p.R24G 0.17 tolerated_low_confidence(0.08) benign(0.026) TCGA-44-7662-01 2 196723505 196723505 C A DNAH7 Missense_Mutation p.R2587I 0.18 deleterious(0) probably_damaging(0.999) TCGA-44-7662-01 2 198966032 198966032 C A PLCL1 Silent p.L981L 0.15 TCGA-44-7662-01 2 201436296 201436296 G A SGOL2 Silent p.K409K 0.10 TCGA-44-7662-01 2 202900716 202900716 G T FZD7 Missense_Mutation p.R449L 0.11 deleterious(0) probably_damaging(0.989) TCGA-44-7662-01 2 206617582 206617582 G A NRP2 Missense_Mutation p.G643R 0.21 deleterious(0.04) possibly_damaging(0.793) TCGA-44-7662-01 2 207432002 207432003 TT A ADAM23 Frame_Shift_Del p.L484Nfs*81 0.22 TCGA-44-7662-01 2 207827201 207827201 G T CPO Nonsense_Mutation p.E214* 0.26 TCGA-44-7662-01 2 208841503 208841503 G C PLEKHM3 Missense_Mutation p.P473R 0.13 tolerated(0.06) benign(0.004) TCGA-44-7662-01 2 210558713 210558713 G A MAP2 Missense_Mutation p.D607N 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.639) TCGA-44-7662-01 2 212426632 212426632 G T ERBB4 Missense_Mutation p.A828D 0.12 deleterious(0) probably_damaging(0.978) TCGA-44-7662-01 2 219563383 219563383 G T STK36 Missense_Mutation p.R1039L 0.22 deleterious(0.01) possibly_damaging(0.805) TCGA-44-7662-01 2 219754997 219754997 G T WNT10A Missense_Mutation p.R223L 0.23 deleterious(0.03) possibly_damaging(0.461) TCGA-44-7662-01 2 224462640 224462640 G T SCG2 Missense_Mutation p.P454H 0.14 tolerated(0.14) possibly_damaging(0.8) TCGA-44-7662-01 2 227729482 227729482 A T RHBDD1 Missense_Mutation p.N25Y 0.18 deleterious(0.01) benign(0.275) TCGA-44-7662-01 2 233398942 233398942 C T CHRND Missense_Mutation p.P421S 0.20 tolerated(0.47) benign(0.392) TCGA-44-7662-01 2 233406100 233406100 G A CHRNG Missense_Mutation p.E123K 0.10 tolerated(0.08) probably_damaging(0.933) TCGA-44-7662-01 2 234545480 234545480 T C UGT1A10 Silent p.S104S 0.16 TCGA-44-7662-01 2 238280323 238280323 A T COL6A3 Intron 0.13 TCGA-44-7662-01 2 238283178 238283178 C T COL6A3 Missense_Mutation p.V1186M 0.11 probably_damaging(0.981) TCGA-44-7662-01 2 238626448 238626448 G T LRRFIP1 Intron 0.17 TCGA-44-7662-01 2 238725845 238725845 C T RBM44 Nonsense_Mutation p.Q96* 0.25 TCGA-44-7662-01 2 238727007 238727007 G A RBM44 Missense_Mutation p.R483K 0.08 deleterious(0.01) benign(0.081) TCGA-44-7662-01 2 240982154 240982154 G C PRR21 Silent p.L82L 0.18 TCGA-44-7662-01 2 241569824 241569824 G T GPR35 Missense_Mutation p.W183L 0.12 tolerated(0.76) benign(0.023) TCGA-44-7662-01 2 25523106 25523106 C A DNMT3A Nonsense_Mutation p.E27* 0.20 TCGA-44-7662-01 2 27550111 27550111 C A GTF3C2 Missense_Mutation p.R817L 0.11 deleterious(0) probably_damaging(0.94) TCGA-44-7662-01 2 29294243 29294243 T A C2orf71 Missense_Mutation p.H962L 0.06 deleterious(0.03) possibly_damaging(0.809) TCGA-44-7662-01 2 29449807 29449807 C A ALK Missense_Mutation p.E1016D 0.31 tolerated(0.48) benign(0.002) TCGA-44-7662-01 2 80530395 80530395 A C LRRTM1 Missense_Mutation p.C184G 0.14 deleterious(0) probably_damaging(0.995) TCGA-44-7662-01 2 86088367 86088367 T A ST3GAL5 Missense_Mutation p.L85F 0.36 tolerated(0.06) possibly_damaging(0.851) TCGA-44-7662-01 2 86378436 86378436 G C IMMT Missense_Mutation p.A462G 0.06 deleterious(0) benign(0.043) TCGA-44-7662-01 2 95753185 95753185 C A MRPS5 Missense_Mutation p.V404F 0.19 tolerated(0.43) benign(0.232) TCGA-44-7662-01 2 98355997 98355997 C G ZAP70 3'UTR 0.24 TCGA-44-7662-01 3 113187949 113187949 T G SPICE1 Silent p.R250R 0.26 TCGA-44-7662-01 3 12211287 12211287 G A SYN2 RNA 0.07 TCGA-44-7662-01 3 125876333 125876333 A G ALDH1L1 Silent p.D137D 0.07 TCGA-44-7662-01 3 134825299 134825299 C A EPHB1 Missense_Mutation p.A272E 0.31 tolerated(0.5) benign(0.017) TCGA-44-7662-01 3 135969287 135969287 G A PCCB Missense_Mutation p.A24T 0.27 tolerated_low_confidence(0.44) benign(0.002) TCGA-44-7662-01 3 147128840 147128840 C T ZIC1 Missense_Mutation p.A314V 0.41 deleterious(0) possibly_damaging(0.823) TCGA-44-7662-01 3 14769948 14769948 C T C3orf20 Silent p.L565L 0.22 TCGA-44-7662-01 3 151155508 151155508 G A IGSF10 Missense_Mutation p.L2281F 0.45 deleterious(0) probably_damaging(1) TCGA-44-7662-01 3 155571625 155571625 C A SLC33A1 Silent p.G54G 0.30 TCGA-44-7662-01 3 157823778 157823778 A G SHOX2 Silent p.F12F 0.20 TCGA-44-7662-01 3 165503972 165503972 A G BCHE Missense_Mutation p.F549L 0.21 tolerated(0.2) possibly_damaging(0.874) TCGA-44-7662-01 3 173998697 173998697 G C NLGN1 Missense_Mutation p.L692F 0.46 deleterious(0) probably_damaging(0.994) TCGA-44-7662-01 3 180675674 180675674 G T FXR1 Silent p.V316V 0.43 TCGA-44-7662-01 3 180675675 180675675 A T FXR1 Nonsense_Mutation p.R317* 0.43 TCGA-44-7662-01 3 186943140 186943140 G A MASP1 Silent p.I571I 0.47 TCGA-44-7662-01 3 196242176 196242176 A T SMCO1 5'UTR 0.36 TCGA-44-7662-01 3 2778005 2778005 A G CNTN4 Silent p.G54G 0.10 TCGA-44-7662-01 3 402006 402006 T A CHL1 Missense_Mutation p.I402N 0.16 deleterious(0) probably_damaging(0.947) TCGA-44-7662-01 3 42915786 42915786 A T CYP8B1 3'UTR 0.10 TCGA-44-7662-01 3 48658349 48658349 T A TMEM89 Missense_Mutation p.I136F 0.30 deleterious(0) probably_damaging(0.997) TCGA-44-7662-01 3 55504038 55504038 C A WNT5A 3'UTR 0.29 TCGA-44-7662-01 3 73434883 73434883 G T PDZRN3 Missense_Mutation p.H524Q 0.24 tolerated(0.22) benign(0.155) TCGA-44-7662-01 4 100348950 100348950 C A ADH7 Missense_Mutation p.A202S 0.13 tolerated(0.25) possibly_damaging(0.843) TCGA-44-7662-01 4 10446863 10446863 A G ZNF518B Missense_Mutation p.F364L 0.24 tolerated(0.18) benign(0.048) TCGA-44-7662-01 4 113524823 113524823 C A C4orf21 Nonsense_Mutation p.G945* 0.15 TCGA-44-7662-01 4 126241676 126241676 G C FAT4 Silent p.G1370G 0.14 TCGA-44-7662-01 4 134073223 134073223 G T PCDH10 Missense_Mutation p.R643L 0.25 tolerated(0.06) possibly_damaging(0.557) TCGA-44-7662-01 4 141555266 141555266 A C TBC1D9 Missense_Mutation p.L861R 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-44-7662-01 4 152682016 152682016 C G PET112 Missense_Mutation p.R40T 0.19 deleterious_low_confidence(0.01) benign(0.193) TCGA-44-7662-01 4 155250852 155250852 G T DCHS2 Silent p.I792I 0.13 TCGA-44-7662-01 4 156294509 156294509 G A MAP9 Missense_Mutation p.S87L 0.17 deleterious(0.03) benign(0.005) TCGA-44-7662-01 4 156651382 156651382 A T GUCY1A3 Nonstop_Mutation p.*691Lext*15 0.13 TCGA-44-7662-01 4 162459336 162459336 C T FSTL5 Missense_Mutation p.D432N 0.09 deleterious(0) probably_damaging(0.98) TCGA-44-7662-01 4 164271597 164271597 G A NPY5R Missense_Mutation p.G58R 0.13 deleterious(0) probably_damaging(1) TCGA-44-7662-01 4 17585192 17585192 G T LAP3 Missense_Mutation p.V156L 0.25 tolerated(0.66) benign(0.002) TCGA-44-7662-01 4 184606247 184606247 G A TRAPPC11 Silent p.L526L 0.20 TCGA-44-7662-01 4 187455522 187455522 C A MTNR1A Missense_Mutation p.R125L 0.24 deleterious(0) probably_damaging(0.997) TCGA-44-7662-01 4 22748966 22748966 G T GBA3 Missense_Mutation p.V112F 0.07 deleterious(0) probably_damaging(0.968) TCGA-44-7662-01 4 48536592 48536592 C G FRYL Missense_Mutation p.E2225D 0.07 tolerated(0.63) benign(0.06) TCGA-44-7662-01 4 57181839 57181839 C T KIAA1211 Missense_Mutation p.A724V 0.16 deleterious(0) possibly_damaging(0.682) TCGA-44-7662-01 4 62812728 62812728 C A LPHN3 Missense_Mutation p.T771K 0.09 tolerated(0.91) benign(0.403) TCGA-44-7662-01 4 66467859 66467859 C A EPHA5 Missense_Mutation p.C137F 0.22 deleterious(0) probably_damaging(0.996) TCGA-44-7662-01 4 70066400 70066400 G A UGT2B11 Missense_Mutation p.H450Y 0.23 deleterious(0.01) possibly_damaging(0.692) TCGA-44-7662-01 4 70823394 70823394 C A CSN2 Silent p.L91L 0.12 TCGA-44-7662-01 4 71510364 71510364 C G ENAM Missense_Mutation p.S1074C 0.24 deleterious(0.04) probably_damaging(0.987) TCGA-44-7662-01 4 72432731 72432731 A G SLC4A4 Missense_Mutation p.H1037R 0.17 tolerated(0.42) benign(0) TCGA-44-7662-01 4 76841044 76841044 C A NAAA Intron 0.16 TCGA-44-7662-01 4 79300930 79300930 A T FRAS1 Missense_Mutation p.I1115F 0.18 benign(0.021) TCGA-44-7662-01 4 85569914 85569914 C T CDS1 3'UTR 0.25 TCGA-44-7662-01 4 90874520 90874520 A C MMRN1 Missense_Mutation p.K1213T 0.25 deleterious(0) probably_damaging(0.987) TCGA-44-7662-01 4 96761473 96761473 G T PDHA2 Nonsense_Mutation p.E58* 0.12 TCGA-44-7662-01 5 10461347 10461347 G T ROPN1L Nonsense_Mutation p.E157* 0.44 TCGA-44-7662-01 5 110407433 110407433 G A TSLP 5'UTR 0.25 TCGA-44-7662-01 5 11346640 11346640 T C CTNND2 Missense_Mutation p.Y491C 0.06 deleterious(0) possibly_damaging(0.827) TCGA-44-7662-01 5 11364993 11364993 C T CTNND2 Missense_Mutation p.R396Q 0.08 deleterious(0.04) possibly_damaging(0.775) TCGA-44-7662-01 5 118560423 118560423 A G DMXL1 Missense_Mutation p.N2745S 0.15 deleterious(0.03) benign(0.004) TCGA-44-7662-01 5 126792830 126792830 G T MEGF10 Silent p.V1081V 0.06 TCGA-44-7662-01 5 127800434 127800434 C A FBN2 Missense_Mutation p.R270L 0.13 tolerated(0.06) possibly_damaging(0.726) TCGA-44-7662-01 5 134785511 134785511 C T TIFAB Missense_Mutation p.R40Q 0.07 tolerated(0.08) benign(0.066) TCGA-44-7662-01 5 137501538 137501538 G C BRD8 Missense_Mutation p.I419M 0.05 deleterious(0) probably_damaging(0.984) TCGA-44-7662-01 5 140077256 140077256 G T HARS2 Missense_Mutation p.D434Y 0.34 deleterious(0) probably_damaging(0.928) TCGA-44-7662-01 5 140175912 140175912 T A PCDHA2 Missense_Mutation p.F455I 0.31 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-44-7662-01 5 140202127 140202127 G T PCDHA5 Missense_Mutation p.S256I 0.36 deleterious_low_confidence(0.04) benign(0.001) TCGA-44-7662-01 5 140530172 140530172 C A PCDHB6 Missense_Mutation p.P112T 0.16 deleterious(0) probably_damaging(0.998) TCGA-44-7662-01 5 140725511 140725511 G T PCDHGA3 Silent p.A637A 0.22 TCGA-44-7662-01 5 140736090 140736090 A T PCDHGA4 Missense_Mutation p.Q441H 0.23 tolerated_low_confidence(0.81) benign(0.043) TCGA-44-7662-01 5 14481375 14481375 G T TRIO Silent p.L2123L 0.07 TCGA-44-7662-01 5 150867848 150867848 C A SLC36A1 3'UTR 0.43 TCGA-44-7662-01 5 15500789 15500789 G T FBXL7 Missense_Mutation p.G2C 0.12 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-44-7662-01 5 156899856 156899856 C T NIPAL4 Missense_Mutation p.P430L 0.32 tolerated(0.22) benign(0.003) TCGA-44-7662-01 5 15935353 15935353 C A FBXL7 Intron 0.08 TCGA-44-7662-01 5 15935354 15935354 C A FBXL7 Intron 0.08 TCGA-44-7662-01 5 159992831 159992831 G T ATP10B Missense_Mutation p.P1339T 0.26 tolerated(0.17) benign(0.001) TCGA-44-7662-01 5 161116110 161116110 C A GABRA6 Missense_Mutation p.H127Q 0.20 deleterious(0) probably_damaging(0.998) TCGA-44-7662-01 5 161524799 161524799 C A GABRG2 Missense_Mutation p.H161Q 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-44-7662-01 5 167617539 167617539 C A TENM2 Missense_Mutation p.P923T 0.21 tolerated(0.11) benign(0.299) TCGA-44-7662-01 5 169535661 169535661 C A FOXI1 3'UTR 0.36 TCGA-44-7662-01 5 176943349 176943349 C T DDX41 Missense_Mutation p.G80S 0.39 tolerated(0.25) possibly_damaging(0.808) TCGA-44-7662-01 5 21783467 21783467 T A CDH12 Missense_Mutation p.S465C 0.11 deleterious(0.01) probably_damaging(0.913) TCGA-44-7662-01 5 26885753 26885753 C T CDH9 Missense_Mutation p.A618T 0.11 deleterious(0.02) probably_damaging(0.989) TCGA-44-7662-01 5 2753469 2753469 G T C5orf38 Missense_Mutation p.R135L 0.10 tolerated_low_confidence(0.07) unknown(0) TCGA-44-7662-01 5 32712470 32712470 C A NPR3 Missense_Mutation p.H196Q 0.07 tolerated(0.78) benign(0) TCGA-44-7662-01 5 35066174 35066174 A C PRLR Missense_Mutation p.L296V 0.06 deleterious(0.01) possibly_damaging(0.871) TCGA-44-7662-01 5 35857001 35857001 C A IL7R 5'UTR 0.43 TCGA-44-7662-01 5 35857002 35857002 T A IL7R 5'UTR 0.44 TCGA-44-7662-01 5 38481840 38481840 T A LIFR Missense_Mutation p.N1051Y 0.53 deleterious(0) possibly_damaging(0.526) TCGA-44-7662-01 5 38950710 38950710 C G RICTOR Missense_Mutation p.K1080N 0.04 tolerated(0.06) benign(0.234) TCGA-44-7662-01 5 39202342 39202342 C T FYB Missense_Mutation p.A251T 0.74 tolerated(0.4) benign(0.001) TCGA-44-7662-01 5 41154099 41154099 C A C6 Silent p.R701R 0.69 TCGA-44-7662-01 5 42718570 42718570 G C GHR Missense_Mutation p.E321Q 0.23 tolerated(0.05) probably_damaging(0.998) TCGA-44-7662-01 5 5242206 5242206 A T ADAMTS16 Missense_Mutation p.Y855F 0.05 tolerated(0.23) benign(0.311) TCGA-44-7662-01 5 54603776 54603776 A G SKIV2L2 5'UTR 0.20 TCGA-44-7662-01 5 79743953 79743953 C T ZFYVE16 Missense_Mutation p.P945S 0.13 tolerated(0.07) benign(0.007) TCGA-44-7662-01 5 917141 917141 G C TRIP13 Missense_Mutation p.E408Q 0.13 tolerated(0.2) benign(0.044) TCGA-44-7662-01 5 95729069 95729070 TG - PCSK1 Frame_Shift_Del p.Q633Rfs*4 0.17 TCGA-44-7662-01 6 110434599 110434599 G T WASF1 Silent p.V66V 0.31 TCGA-44-7662-01 6 132938854 132938854 A T TAAR2 Missense_Mutation p.L164Q 0.08 deleterious(0) possibly_damaging(0.882) TCGA-44-7662-01 6 133070955 133070955 C T VNN2 Missense_Mutation p.R417Q 0.08 tolerated(1) benign(0) TCGA-44-7662-01 6 136589451 136589451 G A BCLAF1 Missense_Mutation p.S749F 0.08 tolerated(0.06) possibly_damaging(0.683) TCGA-44-7662-01 6 138584589 138584589 G T KIAA1244 Missense_Mutation p.A657S 0.10 deleterious(0.01) possibly_damaging(0.656) TCGA-44-7662-01 6 152757200 152757200 C A SYNE1 Missense_Mutation p.A1396S 0.10 possibly_damaging(0.816) TCGA-44-7662-01 6 17292506 17292506 G T RBM24 3'UTR 0.25 TCGA-44-7662-01 6 25820019 25820019 A G SLC17A1 Missense_Mutation p.I111T 0.13 deleterious(0.01) probably_damaging(0.909) TCGA-44-7662-01 6 26225624 26225624 C - HIST1H3E Frame_Shift_Del p.D82Tfs*9 0.20 TCGA-44-7662-01 6 29141709 29141709 G T OR2J2 Missense_Mutation p.M99I 0.21 tolerated(0.06) benign(0.008) TCGA-44-7662-01 6 29141788 29141788 G C OR2J2 Missense_Mutation p.A126P 0.22 deleterious(0) probably_damaging(1) TCGA-44-7662-01 6 29455353 29455353 C G MAS1L Missense_Mutation p.M109I 0.14 deleterious(0.01) benign(0.016) TCGA-44-7662-01 6 29638965 29638965 G A MOG Intron 0.23 TCGA-44-7662-01 6 30139640 30139640 C A TRIM15 Missense_Mutation p.S304R 0.29 tolerated(0.09) benign(0.167) TCGA-44-7662-01 6 30673394 30673394 C A MDC1 Missense_Mutation p.G1189V 0.07 deleterious(0.02) probably_damaging(0.982) TCGA-44-7662-01 6 30679203 30679203 C A MDC1 Missense_Mutation p.S736I 0.22 deleterious(0) probably_damaging(0.979) TCGA-44-7662-01 6 3127533 3127533 C A BPHL Missense_Mutation p.T90K 0.09 deleterious(0.04) possibly_damaging(0.847) TCGA-44-7662-01 6 32020721 32020721 C T TNXB Silent p.P2945P 0.20 TCGA-44-7662-01 6 32025991 32025991 T A TNXB Nonsense_Mutation p.K2557* 0.23 TCGA-44-7662-01 6 32123712 32123712 T C PPT2 Silent p.Y172Y 0.09 TCGA-44-7662-01 6 32169993 32169993 C A NOTCH4 Silent p.L1205L 0.19 TCGA-44-7662-01 6 32188604 32188604 T C NOTCH4 Missense_Mutation p.Q284R 0.10 tolerated(0.19) benign(0.012) TCGA-44-7662-01 6 34825135 34825135 G T UHRF1BP1 Missense_Mutation p.K487N 0.21 deleterious(0.01) probably_damaging(0.98) TCGA-44-7662-01 6 36262158 36262158 G T PNPLA1 Missense_Mutation p.L232F 0.31 tolerated(0.11) probably_damaging(0.995) TCGA-44-7662-01 6 36489584 36489584 A T STK38 Missense_Mutation p.V106D 0.12 deleterious(0) probably_damaging(0.991) TCGA-44-7662-01 6 52054021 52054021 C A IL17A Missense_Mutation p.F133L 0.14 deleterious(0.02) probably_damaging(0.977) TCGA-44-7662-01 6 52054022 52054022 C A IL17A Silent p.R134R 0.13 TCGA-44-7662-01 6 66205196 66205196 G T EYS Silent p.P36P 0.18 TCGA-44-7662-01 6 70744142 70744142 G T COL19A1 Missense_Mutation p.L362F 0.04 tolerated(0.14) unknown(0) TCGA-44-7662-01 6 76657190 76657190 T C IMPG1 Missense_Mutation p.R629G 0.28 deleterious(0.02) possibly_damaging(0.469) TCGA-44-7662-01 6 8097553 8097553 C - EEF1E1 Frame_Shift_Del p.V79Sfs*4 0.19 TCGA-44-7662-01 6 88853926 88853926 C A CNR1 Missense_Mutation p.W356C 0.08 deleterious(0) probably_damaging(1) TCGA-44-7662-01 7 100678887 100678887 C T MUC17 Missense_Mutation p.P1397L 0.27 unknown(0) TCGA-44-7662-01 7 102608499 102608499 C T FBXL13 Silent p.L187L 0.11 TCGA-44-7662-01 7 105641938 105641938 A T CDHR3 Missense_Mutation p.E248D 0.25 deleterious(0) probably_damaging(0.999) TCGA-44-7662-01 7 106509209 106509209 C G PIK3CG Silent p.P401P 0.09 TCGA-44-7662-01 7 107575875 107575875 T C LAMB1 Silent p.S1391S 0.05 TCGA-44-7662-01 7 108524073 108524073 C A C7orf66 Missense_Mutation p.M113I 0.28 deleterious_low_confidence(0) benign(0.216) TCGA-44-7662-01 7 114282627 114282627 A - FOXP2 Frame_Shift_Del p.H338Lfs*4 0.11 TCGA-44-7662-01 7 117375441 117375441 C T CTTNBP2 Silent p.K1190K 0.05 TCGA-44-7662-01 7 120382616 120382616 C - KCND2 Frame_Shift_Del p.Q477Sfs*100 0.14 TCGA-44-7662-01 7 124404249 124404249 G C GPR37 Missense_Mutation p.A261G 0.17 deleterious(0) probably_damaging(0.997) TCGA-44-7662-01 7 128033029 128033029 C A IMPDH1 3'UTR 0.16 TCGA-44-7662-01 7 128454947 128454947 T A CCDC136 Missense_Mutation p.S1007T 0.17 tolerated(0.39) benign(0.007) TCGA-44-7662-01 7 128480720 128480720 C A FLNC Silent p.I556I 0.18 TCGA-44-7662-01 7 132937864 132937864 G C EXOC4 Missense_Mutation p.A3P 0.14 tolerated_low_confidence(0.05) possibly_damaging(0.543) TCGA-44-7662-01 7 136848872 136848872 G T hsa-mir-490 Intron 0.16 TCGA-44-7662-01 7 137154319 137154319 G C DGKI Missense_Mutation p.S825C 0.18 deleterious(0.01) possibly_damaging(0.711) TCGA-44-7662-01 7 141794611 141794611 A T MGAM Missense_Mutation p.Q1573L 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-44-7662-01 7 142498822 142498822 C A TRBC2 Silent p.A33A 0.07 TCGA-44-7662-01 7 142561848 142561848 G T EPHB6 Missense_Mutation p.R97L 0.12 deleterious(0.01) probably_damaging(1) TCGA-44-7662-01 7 142573593 142573593 G C TRPV6 Missense_Mutation p.T276S 0.18 tolerated(0.27) benign(0.022) TCGA-44-7662-01 7 143028687 143028687 C A CLCN1 Missense_Mutation p.R370S 0.10 deleterious(0) probably_damaging(0.999) TCGA-44-7662-01 7 143094673 143094673 T G EPHA1 Missense_Mutation p.I565L 0.05 tolerated(0.86) benign(0.001) TCGA-44-7662-01 7 143098433 143098433 C A EPHA1 Missense_Mutation p.R139L 0.10 deleterious(0.02) probably_damaging(1) TCGA-44-7662-01 7 14613946 14613946 G T DGKB Missense_Mutation p.T555K 0.28 tolerated(0.39) benign(0.219) TCGA-44-7662-01 7 148112510 148112510 C G CNTNAP2 Silent p.G1266G 0.11 TCGA-44-7662-01 7 150324822 150324822 C A GIMAP6 Silent p.G288G 0.15 TCGA-44-7662-01 7 150324823 150324823 C A GIMAP6 Missense_Mutation p.G288V 0.16 tolerated(0.1) benign(0.36) TCGA-44-7662-01 7 150730964 150730964 T C ABCB8 Missense_Mutation p.F123S 0.15 deleterious(0) probably_damaging(0.923) TCGA-44-7662-01 7 150730965 150730965 T C ABCB8 Silent p.F123F 0.15 TCGA-44-7662-01 7 156476605 156476605 T A LMBR1 3'UTR 0.18 TCGA-44-7662-01 7 156476606 156476606 C A LMBR1 3'UTR 0.22 TCGA-44-7662-01 7 15652023 15652023 C A MEOX2 Missense_Mutation p.A302S 0.12 deleterious_low_confidence(0.01) probably_damaging(0.935) TCGA-44-7662-01 7 17382774 17382774 C T AHR 3'UTR 0.14 TCGA-44-7662-01 7 18868817 18868817 C T HDAC9 Missense_Mutation p.H786Y 0.13 deleterious(0) probably_damaging(0.998) TCGA-44-7662-01 7 21856246 21856246 C A DNAH11 Silent p.P3505P 0.33 TCGA-44-7662-01 7 23728907 23728907 G T FAM221A Missense_Mutation p.D87Y 0.25 deleterious(0) probably_damaging(0.998) TCGA-44-7662-01 7 2984046 2984046 C T CARD11 Missense_Mutation p.E162K 0.31 deleterious(0) possibly_damaging(0.687) TCGA-44-7662-01 7 31378610 31378610 C T NEUROD6 Silent p.R91R 0.10 TCGA-44-7662-01 7 31614183 31614183 T A CCDC129 Missense_Mutation p.I168K 0.12 tolerated(1) benign(0) TCGA-44-7662-01 7 34125418 34125418 C A BMPER Missense_Mutation p.P487T 0.22 tolerated(0.09) benign(0.2) TCGA-44-7662-01 7 37780254 37780254 T C GPR141 Missense_Mutation p.F87L 0.10 tolerated(0.12) benign(0.097) TCGA-44-7662-01 7 4153881 4153881 G T SDK1 Silent p.V1266V 0.18 TCGA-44-7662-01 7 44576029 44576029 T C NPC1L1 Splice_Site p.X561_splice 0.30 TCGA-44-7662-01 7 47944779 47944779 T A PKD1L1 Nonsense_Mutation p.K556* 0.43 TCGA-44-7662-01 7 50468265 50468265 G T IKZF1 Missense_Mutation p.Q458H 0.13 tolerated(0.12) possibly_damaging(0.763) TCGA-44-7662-01 7 50468266 50468266 G T IKZF1 Missense_Mutation p.D459Y 0.13 deleterious(0) probably_damaging(1) TCGA-44-7662-01 7 51096328 51096328 T A COBL Missense_Mutation p.H822L 0.30 tolerated(0.69) benign(0) TCGA-44-7662-01 7 71252771 71252771 C T CALN1 Missense_Mutation p.G259S 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-7662-01 7 74133245 74133245 G A GTF2I Missense_Mutation p.E310K 0.12 deleterious(0) benign(0.19) TCGA-44-7662-01 7 75894095 75894095 C T SRRM3 Silent p.S229S 0.23 TCGA-44-7662-01 7 81635091 81635091 G T CACNA2D1 Missense_Mutation p.P502Q 0.16 deleterious(0) probably_damaging(0.98) TCGA-44-7662-01 7 82544203 82544203 C A PCLO Missense_Mutation p.V4367F 0.14 unknown(0) TCGA-44-7662-01 7 86521071 86521071 A T KIAA1324L Missense_Mutation p.L1000Q 0.08 deleterious(0) probably_damaging(0.994) TCGA-44-7662-01 7 87407258 87407258 C T RUNDC3B Missense_Mutation p.L332F 0.26 deleterious(0) probably_damaging(0.984) TCGA-44-7662-01 7 92730776 92730776 G C SAMD9 Missense_Mutation p.I1545M 0.20 tolerated(0.08) benign(0.23) TCGA-44-7662-01 7 95822393 95822393 G A SLC25A13 Missense_Mutation p.R191C 0.14 deleterious(0.05) benign(0.097) TCGA-44-7662-01 7 99912179 99912179 C A SPDYE3 Missense_Mutation p.P336Q 0.31 tolerated(0.24) benign(0.192) TCGA-44-7662-01 8 101718960 101718960 G A PABPC1 Silent p.T507T 0.20 TCGA-44-7662-01 8 101719186 101719186 G A PABPC1 Missense_Mutation p.P459L 0.12 tolerated(0.05) benign(0.008) TCGA-44-7662-01 8 104427550 104427550 G T DCAF13 Missense_Mutation p.R111L 0.25 tolerated_low_confidence(0.22) benign(0) TCGA-44-7662-01 8 10557970 10557970 G T C8orf74 Missense_Mutation p.A292S 0.46 deleterious_low_confidence(0.02) unknown(0) TCGA-44-7662-01 8 106456569 106456569 G T ZFPM2 Silent p.P87P 0.25 TCGA-44-7662-01 8 109796746 109796746 G C TMEM74 Missense_Mutation p.I194M 0.29 deleterious(0) possibly_damaging(0.839) TCGA-44-7662-01 8 113293524 113293524 A T CSMD3 Missense_Mutation p.D3129E 0.16 tolerated(0.07) benign(0.267) TCGA-44-7662-01 8 113650925 113650925 C A CSMD3 Nonsense_Mutation p.E1176* 0.21 TCGA-44-7662-01 8 116616407 116616407 G T TRPS1 Missense_Mutation p.P597T 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-7662-01 8 120435290 120435290 G T NOV Missense_Mutation p.C331F 0.08 deleterious(0) probably_damaging(1) TCGA-44-7662-01 8 120629471 120629471 G A ENPP2 Missense_Mutation p.T197I 0.20 tolerated(0.2) possibly_damaging(0.767) TCGA-44-7662-01 8 125988734 125988734 G A ZNF572 Nonsense_Mutation p.W75* 0.22 TCGA-44-7662-01 8 125988735 125988735 G T ZNF572 Missense_Mutation p.W75C 0.22 tolerated(0.23) benign(0.001) TCGA-44-7662-01 8 126071510 126071510 C A KIAA0196 Missense_Mutation p.R573M 0.15 deleterious(0) possibly_damaging(0.748) TCGA-44-7662-01 8 12952352 12952352 C T DLC1 Missense_Mutation p.D1148N 0.12 deleterious(0.02) probably_damaging(1) TCGA-44-7662-01 8 133894758 133894758 G T TG Missense_Mutation p.G264C 0.20 deleterious(0) probably_damaging(0.998) TCGA-44-7662-01 8 133894759 133894759 G C TG Missense_Mutation p.G264A 0.20 tolerated(0.34) probably_damaging(0.931) TCGA-44-7662-01 8 133906086 133906086 C G TG Silent p.G971G 0.29 TCGA-44-7662-01 8 139155262 139155262 G T FAM135B Silent p.R1211R 0.18 TCGA-44-7662-01 8 139601675 139601675 C G COL22A1 Missense_Mutation p.G1568R 0.37 unknown(0) TCGA-44-7662-01 8 143956473 143956473 C G CYP11B1 Missense_Mutation p.G433A 0.23 tolerated(0.38) benign(0.06) TCGA-44-7662-01 8 143958141 143958141 C T CYP11B1 Silent p.V252V 0.09 TCGA-44-7662-01 8 20107188 20107188 G T LZTS1 3'UTR 0.33 TCGA-44-7662-01 8 22023023 22023023 G C BMP1 Missense_Mutation p.E35D 0.38 tolerated_low_confidence(0.16) benign(0.001) TCGA-44-7662-01 8 40554910 40554910 G T ZMAT4 Missense_Mutation p.A68D 0.38 tolerated(0.5) benign(0.001) TCGA-44-7662-01 8 41530184 41530184 G T ANK1 Missense_Mutation p.A1636D 0.48 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-44-7662-01 8 67062624 67062624 G A TRIM55 Missense_Mutation p.G303D 0.06 deleterious(0.04) benign(0.318) TCGA-44-7662-01 8 67089250 67089250 C G CRH Missense_Mutation p.E155Q 0.26 deleterious(0.02) benign(0.287) TCGA-44-7662-01 8 67355077 67355077 G A ADHFE1 Missense_Mutation p.E48K 0.21 deleterious(0.01) possibly_damaging(0.806) TCGA-44-7662-01 8 6793589 6793589 G C DEFA4 Missense_Mutation p.L83V 0.18 tolerated(0.51) benign(0.001) TCGA-44-7662-01 8 68200218 68200218 T C ARFGEF1 Silent p.V333V 0.21 TCGA-44-7662-01 8 71078980 71078980 C A NCOA2 Missense_Mutation p.G184V 0.20 tolerated(0.43) benign(0.004) TCGA-44-7662-01 8 75227264 75227264 C A JPH1 Missense_Mutation p.G324V 0.26 deleterious(0) probably_damaging(0.986) TCGA-44-7662-01 8 77618211 77618211 G - ZFHX4 Frame_Shift_Del p.G630Vfs*3 0.28 TCGA-44-7662-01 8 77690524 77690524 C A ZFHX4 Silent p.V1058V 0.24 TCGA-44-7662-01 8 77768313 77768313 G A ZFHX4 Silent p.P3052P 0.08 TCGA-44-7662-01 8 77768453 77768453 C A ZFHX4 Missense_Mutation p.P3099H 0.06 possibly_damaging(0.904) TCGA-44-7662-01 8 80577088 80577088 C T STMN2 3'UTR 0.20 TCGA-44-7662-01 8 88886253 88886253 A T DCAF4L2 5'UTR 0.14 TCGA-44-7662-01 8 94746661 94746661 T A RBM12B Missense_Mutation p.R660W 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-7662-01 8 95802050 95802050 C T DPY19L4 Missense_Mutation p.S695F 0.19 deleterious(0.02) probably_damaging(1) TCGA-44-7662-01 8 97172992 97172992 G T GDF6 5'UTR 0.19 TCGA-44-7662-01 9 104317049 104317049 A T RNF20 Missense_Mutation p.E698V 0.14 deleterious(0.05) benign(0.118) TCGA-44-7662-01 9 113704146 113704146 C A LPAR1 Silent p.L116L 0.33 TCGA-44-7662-01 9 118950203 118950203 G T PAPPA Missense_Mutation p.D396Y 0.29 deleterious(0.01) benign(0.004) TCGA-44-7662-01 9 122004435 122004435 C A BRINP1 Missense_Mutation p.A157S 0.32 tolerated(1) benign(0.16) TCGA-44-7662-01 9 123165113 123165113 T A CDK5RAP2 Missense_Mutation p.S1760C 0.29 deleterious(0.01) possibly_damaging(0.57) TCGA-44-7662-01 9 124536647 124536647 A T DAB2IP Missense_Mutation p.R998W 0.14 deleterious(0.01) probably_damaging(0.977) TCGA-44-7662-01 9 125424280 125424280 G T OR1L1 Nonsense_Mutation p.E96* 0.14 TCGA-44-7662-01 9 125424286 125424286 C G OR1L1 Missense_Mutation p.L98V 0.06 deleterious(0.01) possibly_damaging(0.905) TCGA-44-7662-01 9 130111211 130111211 G T GARNL3 Missense_Mutation p.E480D 0.36 tolerated(0.06) probably_damaging(0.996) TCGA-44-7662-01 9 130710649 130710649 C T FAM102A Silent p.K153K 0.24 TCGA-44-7662-01 9 131343323 131343323 G C SPTAN1 Missense_Mutation p.W482C 0.11 deleterious(0) probably_damaging(1) TCGA-44-7662-01 9 134136376 134136376 C A FAM78A Missense_Mutation p.A229S 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-44-7662-01 9 139651489 139651489 C - LCN8 Splice_Site p.X52_splice 0.27 TCGA-44-7662-01 9 14722195 14722195 C A CER1 Missense_Mutation p.W159L 0.23 deleterious(0.04) benign(0.236) TCGA-44-7662-01 9 16419146 16419146 C A BNC2 Missense_Mutation p.K1047N 0.24 deleterious(0) probably_damaging(0.998) TCGA-44-7662-01 9 21077402 21077402 G T IFNB1 Missense_Mutation p.A156D 0.23 tolerated(0.25) benign(0.065) TCGA-44-7662-01 9 21455696 21455696 C T MIR31HG RNA 0.14 TCGA-44-7662-01 9 21971108 21971108 C T CDKN2A Missense_Mutation p.D84N 0.19 deleterious(0) probably_damaging(1) TCGA-44-7662-01 9 27562475 27562475 C A C9orf72 Splice_Site p.X169_splice 0.21 TCGA-44-7662-01 9 32632712 32632712 C A TAF1L Missense_Mutation p.A956S 0.11 deleterious(0) benign(0.035) TCGA-44-7662-01 9 35059077 35059077 G A VCP Missense_Mutation p.T715I 0.12 tolerated(0.2) benign(0.001) TCGA-44-7662-01 9 43626729 43626729 T A SPATA31A6 Missense_Mutation p.Q653L 0.27 deleterious(0) probably_damaging(0.969) TCGA-44-7662-01 9 79635163 79635163 C T FOXB2 Missense_Mutation p.P198L 0.42 tolerated_low_confidence(0.78) unknown(0) TCGA-44-7662-01 9 8340382 8340382 G T PTPRD Silent p.T1738T 0.16 TCGA-44-7662-01 9 8518250 8518250 C A PTPRD Missense_Mutation p.A381S 0.22 tolerated(0.11) possibly_damaging(0.692) TCGA-44-7662-01 9 87635137 87635137 T A NTRK2 Missense_Mutation p.M730K 0.27 deleterious(0) probably_damaging(0.93) TCGA-44-7662-01 9 97365818 97365818 C A FBP1 Missense_Mutation p.V288F 0.26 deleterious(0) possibly_damaging(0.638) TCGA-44-7662-01 X 100292981 100292981 G C TRMT2B Silent p.L121L 0.31 TCGA-44-7662-01 X 100604750 100604750 G T BTK 3'UTR 0.24 TCGA-44-7662-01 X 102004718 102004718 C T BHLHB9 Silent p.C265C 0.27 TCGA-44-7662-01 X 102564882 102564882 G T BEX2 Missense_Mutation p.A40E 0.41 tolerated(0.1) benign(0.087) TCGA-44-7662-01 X 107977627 107977627 C A IRS4 Missense_Mutation p.G650W 0.29 deleterious_low_confidence(0) unknown(0) TCGA-44-7662-01 X 109695399 109695399 A G RGAG1 Silent p.T518T 0.31 TCGA-44-7662-01 X 113961323 113961323 G T HTR2C 5'UTR 0.27 TCGA-44-7662-01 X 119410766 119410766 C T TMEM255A Missense_Mutation p.A241T 0.15 deleterious(0) probably_damaging(0.999) TCGA-44-7662-01 X 119410810 119410810 G A TMEM255A Missense_Mutation p.T226I 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-44-7662-01 X 123785874 123785874 G T TENM1 Nonsense_Mutation p.S490* 0.38 TCGA-44-7662-01 X 15349879 15349879 C A PIGA Missense_Mutation p.Q58H 0.38 deleterious(0) probably_damaging(0.912) TCGA-44-7662-01 X 154490296 154490296 T C RAB39B Missense_Mutation p.Y145C 0.57 tolerated(0.22) benign(0.008) TCGA-44-7662-01 X 26212607 26212607 C A MAGEB6 Missense_Mutation p.S215Y 0.23 deleterious(0) possibly_damaging(0.697) TCGA-44-7662-01 X 2994711 2994711 G T ARSF Splice_Site p.X95_splice 0.17 TCGA-44-7662-01 X 30269404 30269404 C A MAGEB1 Missense_Mutation p.P265H 0.41 deleterious(0) probably_damaging(1) TCGA-44-7662-01 X 35974241 35974241 G T CXorf22 Silent p.T446T 0.29 TCGA-44-7662-01 X 48117968 48117968 T C SSX1 Intron 0.28 TCGA-44-7662-01 X 50094639 50094639 G T CCNB3 Missense_Mutation p.L1375F 0.30 deleterious(0) probably_damaging(0.998) TCGA-44-7662-01 X 73041025 73041025 G T XIST RNA 0.17 TCGA-44-7662-01 X 77912812 77912812 A G ZCCHC5 Missense_Mutation p.I369T 0.40 deleterious(0) benign(0.36) TCGA-44-7662-01 X 91132808 91132808 T A PCDH11X Silent p.T523T 0.22 TCGA-44-7667-01 10 118314997 118314997 G C PNLIP Silent p.V263V 0.25 TCGA-44-7667-01 10 118314998 118314998 G T PNLIP Missense_Mutation p.D264Y 0.25 deleterious(0) probably_damaging(0.984) TCGA-44-7667-01 10 127697904 127697904 C G FANK1 Intron 0.28 TCGA-44-7667-01 10 132915186 132915186 C A TCERG1L Missense_Mutation p.C424F 0.40 tolerated(0.2) benign(0.074) TCGA-44-7667-01 10 1569024 1569024 G T ADARB2 Intron 0.18 TCGA-44-7667-01 10 24508697 24508697 G T KIAA1217 Silent p.G71G 0.22 TCGA-44-7667-01 10 27687884 27687884 C G PTCHD3 Missense_Mutation p.C548S 0.35 tolerated(0.22) benign(0.064) TCGA-44-7667-01 10 28233798 28233798 C A ARMC4 Nonsense_Mutation p.G494* 0.23 TCGA-44-7667-01 10 43606872 43606872 G T RET Missense_Mutation p.R494M 0.32 tolerated(0.1) benign(0.047) TCGA-44-7667-01 10 48389088 48389088 G T RBP3 Missense_Mutation p.T597N 0.24 tolerated(1) possibly_damaging(0.728) TCGA-44-7667-01 10 48390570 48390570 G T RBP3 Missense_Mutation p.P103Q 0.43 deleterious(0.03) probably_damaging(0.998) TCGA-44-7667-01 10 49440192 49440192 C T FRMPD2 Silent p.E378E 0.14 TCGA-44-7667-01 10 51556792 51556792 G C MSMB Missense_Mutation p.E51Q 0.37 tolerated(0.33) benign(0.028) TCGA-44-7667-01 10 52008320 52008320 A T ASAH2 Silent p.L17L 0.08 TCGA-44-7667-01 10 52575818 52575818 G T A1CF Silent p.A371A 0.31 TCGA-44-7667-01 10 55698613 55698613 A C PCDH15 Missense_Mutation p.L1112R 0.29 deleterious(0) probably_damaging(0.985) TCGA-44-7667-01 10 55912886 55912886 C G PCDH15 Silent p.A586A 0.19 TCGA-44-7667-01 10 59956160 59956160 C A IPMK Missense_Mutation p.V310L 0.24 tolerated(0.32) benign(0.306) TCGA-44-7667-01 10 71103608 71103608 G A HK1 Missense_Mutation p.R34Q 0.34 tolerated(0.27) benign(0.204) TCGA-44-7667-01 10 71103609 71103609 G T HK1 Silent p.R34R 0.33 TCGA-44-7667-01 10 71129011 71129011 G A HK1 Missense_Mutation p.V208I 0.17 tolerated(0.09) benign(0.198) TCGA-44-7667-01 10 71707071 71707071 T C COL13A1 Silent p.H666H 0.31 TCGA-44-7667-01 10 73047497 73047497 G T UNC5B Missense_Mutation p.K292N 0.10 deleterious(0.04) possibly_damaging(0.612) TCGA-44-7667-01 11 101868400 101868400 C G KIAA1377 3'UTR 0.15 TCGA-44-7667-01 11 102668050 102668050 T A MMP1 Missense_Mutation p.D96V 0.16 deleterious(0) probably_damaging(1) TCGA-44-7667-01 11 102709346 102709346 C A MMP3 Missense_Mutation p.D389Y 0.27 deleterious(0) probably_damaging(1) TCGA-44-7667-01 11 120769328 120769328 C G GRIK4 Missense_Mutation p.L418V 0.29 deleterious(0) probably_damaging(0.988) TCGA-44-7667-01 11 120983866 120983866 G T TECTA Missense_Mutation p.G191V 0.17 deleterious(0) probably_damaging(0.994) TCGA-44-7667-01 11 123810885 123810885 G T OR4D5 Missense_Mutation p.A188S 0.09 tolerated(0.07) probably_damaging(0.996) TCGA-44-7667-01 11 1247853 1247853 C A MUC5B Missense_Mutation p.P70T 0.55 unknown(0) TCGA-44-7667-01 11 1256632 1256632 C A MUC5B Missense_Mutation p.L957I 0.38 unknown(0) TCGA-44-7667-01 11 128868217 128868217 C A ARHGAP32 Nonsense_Mutation p.E384* 0.41 TCGA-44-7667-01 11 132081930 132081930 G C NTM Missense_Mutation p.V139L 0.10 tolerated(0.2) benign(0.004) TCGA-44-7667-01 11 1643084 1643084 G T KRTAP5-4 Silent p.G80G 0.48 TCGA-44-7667-01 11 17542423 17542423 G T USH1C Missense_Mutation p.P402T 0.60 tolerated_low_confidence(0.59) benign(0.017) TCGA-44-7667-01 11 19259527 19259527 C G E2F8 Silent p.P56P 0.12 TCGA-44-7667-01 11 2155404 2155404 G T IGF2 Intron 0.60 TCGA-44-7667-01 11 26713985 26713985 C A SLC5A12 Intron 0.47 TCGA-44-7667-01 11 40136824 40136824 T C LRRC4C Missense_Mutation p.Y340C 0.14 deleterious(0.02) benign(0.007) TCGA-44-7667-01 11 43908159 43908159 A G ALKBH3 Silent p.R74R 0.11 TCGA-44-7667-01 11 45970434 45970434 C A PHF21A Intron 0.15 TCGA-44-7667-01 11 4790663 4790663 A C OR51F1 Missense_Mutation p.L162R 0.10 tolerated(0.12) probably_damaging(0.928) TCGA-44-7667-01 11 48186005 48186005 G T PTPRJ Missense_Mutation p.V1265L 0.39 deleterious(0) probably_damaging(0.98) TCGA-44-7667-01 11 55111085 55111085 C A OR4A16 Missense_Mutation p.L137M 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.637) TCGA-44-7667-01 11 55339908 55339908 C G OR4C16 Missense_Mutation p.S102C 0.43 tolerated(0.18) benign(0.002) TCGA-44-7667-01 11 55735884 55735884 A C OR10AG1 Missense_Mutation p.F19C 0.07 deleterious(0) possibly_damaging(0.743) TCGA-44-7667-01 11 55761408 55761408 C A OR5F1 Nonsense_Mutation p.E232* 0.09 TCGA-44-7667-01 11 55761409 55761409 C A OR5F1 Silent p.G231G 0.09 TCGA-44-7667-01 11 55872707 55872707 C - OR8H2 Frame_Shift_Del p.T65Lfs*19 0.14 TCGA-44-7667-01 11 56057903 56057903 T G OR8H1 Silent p.T212T 0.10 TCGA-44-7667-01 11 56114150 56114150 T A OR8K1 Missense_Mutation p.N212K 0.52 deleterious_low_confidence(0.01) possibly_damaging(0.878) TCGA-44-7667-01 11 56230147 56230147 G A OR5M9 Missense_Mutation p.T244M 0.14 tolerated(0.17) possibly_damaging(0.9) TCGA-44-7667-01 11 56230648 56230648 G C OR5M9 Missense_Mutation p.P77R 0.15 deleterious(0) probably_damaging(0.925) TCGA-44-7667-01 11 5776004 5776004 G T OR52N4 Missense_Mutation p.A12S 0.50 tolerated(1) benign(0.004) TCGA-44-7667-01 11 59271269 59271269 C A OR4D11 Missense_Mutation p.S74Y 0.46 deleterious(0) possibly_damaging(0.456) TCGA-44-7667-01 11 5969306 5969306 A T OR56A3 Missense_Mutation p.T244S 0.16 deleterious(0) probably_damaging(0.986) TCGA-44-7667-01 11 59812143 59812143 G T OOSP2 Splice_Site p.X82_splice 0.52 TCGA-44-7667-01 11 61666786 61666786 C A RAB3IL1 Missense_Mutation p.A356S 0.43 tolerated(0.25) benign(0.333) TCGA-44-7667-01 11 62931422 62931422 G C SLC22A25 Missense_Mutation p.I506M 0.10 deleterious(0.02) probably_damaging(0.937) TCGA-44-7667-01 11 63665752 63665752 G T MARK2 Missense_Mutation p.V113F 0.09 deleterious(0) probably_damaging(1) TCGA-44-7667-01 11 65272782 65272782 A - MALAT1 RNA 0.09 TCGA-44-7667-01 11 67410317 67410317 G A ACY3 Missense_Mutation p.P280S 0.24 deleterious(0.03) probably_damaging(1) TCGA-44-7667-01 11 68703722 68703722 G T IGHMBP2 Missense_Mutation p.A592S 0.23 tolerated(0.21) possibly_damaging(0.732) TCGA-44-7667-01 11 69978181 69978181 C T ANO1 Silent p.L418L 0.92 TCGA-44-7667-01 11 71276985 71276985 G T KRTAP5-10 Missense_Mutation p.G118W 0.08 unknown(0) TCGA-44-7667-01 11 71952179 71952179 C A PHOX2A Silent p.A124A 0.18 TCGA-44-7667-01 11 721659 721659 A G EPS8L2 Missense_Mutation p.K288R 0.07 tolerated(0.18) benign(0.071) TCGA-44-7667-01 11 73067273 73067273 G T ARHGEF17 Missense_Mutation p.E1239D 0.14 tolerated(1) benign(0.002) TCGA-44-7667-01 11 76835008 76835008 G T CAPN5 3'UTR 0.67 TCGA-44-7667-01 11 7960514 7960514 A G OR10A3 Missense_Mutation p.L185P 0.57 deleterious(0) probably_damaging(1) TCGA-44-7667-01 11 82643096 82643096 G T C11orf82 Missense_Mutation p.W239L 0.10 deleterious(0) possibly_damaging(0.758) TCGA-44-7667-01 11 89133461 89133461 G T NOX4 Silent p.I311I 0.11 TCGA-44-7667-01 12 109577565 109577565 G T ACACB Missense_Mutation p.G119W 0.31 deleterious_low_confidence(0.03) benign(0.007) TCGA-44-7667-01 12 109577566 109577566 G T ACACB Missense_Mutation p.G119V 0.32 deleterious_low_confidence(0.05) benign(0.002) TCGA-44-7667-01 12 109723224 109723224 G C FOXN4 Silent p.S262S 0.22 TCGA-44-7667-01 12 109723225 109723225 G T FOXN4 Missense_Mutation p.S262Y 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-44-7667-01 12 109972414 109972414 G C UBE3B Missense_Mutation p.G1012R 0.22 deleterious(0) probably_damaging(0.997) TCGA-44-7667-01 12 111099122 111099122 C T HVCN1 Silent p.E51E 0.40 TCGA-44-7667-01 12 111336756 111336756 C T CCDC63 Missense_Mutation p.T390M 0.14 deleterious(0.01) possibly_damaging(0.529) TCGA-44-7667-01 12 115118696 115118696 G A TBX3 Silent p.D215D 0.07 TCGA-44-7667-01 12 116424272 116424272 C G MED13L Silent p.P1379P 0.35 TCGA-44-7667-01 12 117191859 117191859 A C RNFT2 Silent p.S207S 0.11 TCGA-44-7667-01 12 12483103 12483103 A G MANSC1 Missense_Mutation p.L385P 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-44-7667-01 12 132400695 132400695 C T ULK1 Silent p.S623S 0.27 TCGA-44-7667-01 12 18892116 18892116 G A CAPZA3 3'UTR 0.37 TCGA-44-7667-01 12 27840339 27840339 G T PPFIBP1 Missense_Mutation p.V763F 0.10 deleterious(0) probably_damaging(1) TCGA-44-7667-01 12 29904705 29904705 G T TMTC1 Silent p.R278R 0.43 TCGA-44-7667-01 12 31819092 31819092 C T METTL20 Missense_Mutation p.T129I 0.10 deleterious(0) possibly_damaging(0.614) TCGA-44-7667-01 12 39726099 39726099 C A KIF21A Nonsense_Mutation p.E990* 0.30 TCGA-44-7667-01 12 41408078 41408078 G C CNTN1 Missense_Mutation p.R721T 0.11 tolerated(0.17) probably_damaging(0.992) TCGA-44-7667-01 12 43777627 43777627 T A ADAMTS20 Missense_Mutation p.M1536L 0.10 tolerated(0.66) benign(0.001) TCGA-44-7667-01 12 45108441 45108442 - AT NELL2 Frame_Shift_Ins p.E410Mfs*8 0.08 TCGA-44-7667-01 12 46355595 46355595 C A SCAF11 Missense_Mutation p.S36I 0.36 deleterious(0.01) possibly_damaging(0.548) TCGA-44-7667-01 12 47471287 47471287 G C AMIGO2 Missense_Mutation p.T500R 0.16 tolerated(0.5) benign(0.309) TCGA-44-7667-01 12 49717643 49717643 C G TROAP Missense_Mutation p.P54A 0.08 deleterious(0.01) benign(0.185) TCGA-44-7667-01 12 5154224 5154224 T A KCNA5 Missense_Mutation p.M304K 0.23 tolerated(0.36) benign(0.003) TCGA-44-7667-01 12 5154247 5154247 G A KCNA5 Missense_Mutation p.V312M 0.25 tolerated(0.13) benign(0.005) TCGA-44-7667-01 12 5154798 5154798 C G KCNA5 Missense_Mutation p.I495M 0.25 tolerated(0.17) probably_damaging(0.994) TCGA-44-7667-01 12 5154822 5154822 C A KCNA5 Silent p.A503A 0.43 TCGA-44-7667-01 12 5155089 5155089 C T KCNA5 Silent p.S592S 0.19 TCGA-44-7667-01 12 52282850 52282850 G T ANKRD33 Splice_Site p.X133_splice 0.22 TCGA-44-7667-01 12 52308279 52308279 G A ACVRL1 Missense_Mutation p.V228I 0.14 deleterious(0.01) benign(0.033) TCGA-44-7667-01 12 52827729 52827729 G T KRT75 Silent p.G120G 0.40 TCGA-44-7667-01 12 52911461 52911461 C A KRT5 Silent p.L335L 0.21 TCGA-44-7667-01 12 53207760 53207760 C A KRT4 Missense_Mutation p.G28V 0.09 tolerated(0.38) benign(0.001) TCGA-44-7667-01 12 54929976 54929976 C - NCKAP1L Frame_Shift_Del p.L1008Sfs*26 0.25 TCGA-44-7667-01 12 55820361 55820361 G T OR6C76 Missense_Mutation p.E108D 0.29 deleterious_low_confidence(0.02) benign(0.163) TCGA-44-7667-01 12 56031201 56031201 C T OR10P1 Missense_Mutation p.P176S 0.36 deleterious(0.05) benign(0.101) TCGA-44-7667-01 12 56231055 56231055 G T MMP19 Missense_Mutation p.A431D 0.32 deleterious(0) probably_damaging(1) TCGA-44-7667-01 12 56495712 56495712 A T ERBB3 Missense_Mutation p.Q1301L 0.36 tolerated(0.3) benign(0.002) TCGA-44-7667-01 12 57843083 57843083 C A INHBC Missense_Mutation p.R113S 0.27 tolerated(0.09) benign(0.187) TCGA-44-7667-01 12 6562638 6562638 C A TAPBPL Silent p.A107A 0.42 TCGA-44-7667-01 12 66642032 66642032 C G IRAK3 3'UTR 0.39 TCGA-44-7667-01 12 67700295 67700297 TGT - CAND1 In_Frame_Del p.V951del 0.28 TCGA-44-7667-01 12 69742148 69742148 G T LYZ 5'UTR 0.39 TCGA-44-7667-01 12 70949649 70949649 C T PTPRB Splice_Site p.X1665_splice 0.10 TCGA-44-7667-01 12 72316795 72316795 G T TBC1D15 Silent p.G629G 0.26 TCGA-44-7667-01 12 75678818 75678818 C A CAPS2 Missense_Mutation p.G499C 0.11 deleterious(0) probably_damaging(0.997) TCGA-44-7667-01 12 78443877 78443877 C G NAV3 Missense_Mutation p.H710D 0.34 deleterious(0) probably_damaging(0.999) TCGA-44-7667-01 12 78444840 78444840 A G NAV3 Missense_Mutation p.D810G 0.15 tolerated(0.07) benign(0.341) TCGA-44-7667-01 12 85255558 85255558 C A SLC6A15 Silent p.P682P 0.45 TCGA-44-7667-01 12 9349607 9349607 C A PZP Splice_Site p.X289_splice 0.11 TCGA-44-7667-01 12 9356441 9356441 C T PZP Missense_Mutation p.E64K 0.33 deleterious(0.01) probably_damaging(0.954) TCGA-44-7667-01 13 109672245 109672245 C T MYO16 Missense_Mutation p.H906Y 0.12 deleterious(0) probably_damaging(1) TCGA-44-7667-01 13 110822982 110822982 C T COL4A1 Silent p.Q1218Q 0.35 TCGA-44-7667-01 13 111155585 111155585 G T COL4A2 Missense_Mutation p.G1332V 0.10 probably_damaging(0.988) TCGA-44-7667-01 13 25283930 25283930 C A ATP12A Nonsense_Mutation p.Y915* 0.43 TCGA-44-7667-01 13 26116075 26116075 G T ATP8A2 Missense_Mutation p.D224Y 0.47 deleterious(0.04) possibly_damaging(0.579) TCGA-44-7667-01 13 26163785 26163785 G T ATP8A2 Missense_Mutation p.R720L 0.33 deleterious(0) benign(0.065) TCGA-44-7667-01 13 28537312 28537312 G T CDX2 Silent p.G294G 0.41 TCGA-44-7667-01 13 36428696 36428696 C A DCLK1 Silent p.P325P 0.47 TCGA-44-7667-01 13 39266287 39266287 C A FREM2 Silent p.I1602I 0.22 TCGA-44-7667-01 13 46287784 46287784 C A SPERT Silent p.G208G 0.28 TCGA-44-7667-01 13 46942261 46942261 C A KIAA0226L Missense_Mutation p.D248Y 0.37 tolerated(1) benign(0.025) TCGA-44-7667-01 13 70681587 70681587 G C KLHL1 Missense_Mutation p.P82R 0.14 tolerated_low_confidence(0.26) benign(0.054) TCGA-44-7667-01 13 86369560 86369560 G T SLITRK6 Missense_Mutation p.P362T 0.13 deleterious(0) possibly_damaging(0.835) TCGA-44-7667-01 14 101450211 101450211 C A RP11-909M7.3 Intron 0.27 TCGA-44-7667-01 14 101521083 101521083 A T MIR134 RNA 0.09 TCGA-44-7667-01 14 102606226 102606226 G T WDR20 5'Flank 0.40 TCGA-44-7667-01 14 105208226 105208226 G A ADSSL1 Missense_Mutation p.G322S 0.40 deleterious(0.03) probably_damaging(1) TCGA-44-7667-01 14 105208227 105208227 G T ADSSL1 Missense_Mutation p.G322V 0.40 deleterious(0) probably_damaging(1) TCGA-44-7667-01 14 105416406 105416406 C G AHNAK2 Missense_Mutation p.E1794D 0.37 benign(0.185) TCGA-44-7667-01 14 106586240 106586240 A T IGHV3-13 Missense_Mutation p.V82E 0.33 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-44-7667-01 14 23794470 23794470 C G BCL2L2-PABPN1 Missense_Mutation p.A326G 0.46 tolerated_low_confidence(0.33) possibly_damaging(0.501) TCGA-44-7667-01 14 23859317 23859317 C A MYH6 Missense_Mutation p.K1227N 0.11 deleterious(0) possibly_damaging(0.697) TCGA-44-7667-01 14 38679184 38679184 G T SSTR1 Missense_Mutation p.R197L 0.43 deleterious(0.04) benign(0.033) TCGA-44-7667-01 14 42356305 42356305 A G LRFN5 Silent p.L159L 0.14 TCGA-44-7667-01 14 64545201 64545201 A C SYNE2 Missense_Mutation p.L3680F 0.10 probably_damaging(0.942) TCGA-44-7667-01 14 74975651 74975651 C T LTBP2 Silent p.V1136V 0.19 TCGA-44-7667-01 14 76045272 76045272 G T FLVCR2 5'UTR 0.33 TCGA-44-7667-01 14 91655475 91655475 A G C14orf159 Missense_Mutation p.N386D 0.16 tolerated(0.6) benign(0.001) TCGA-44-7667-01 14 92958097 92958097 C T SLC24A4 Silent p.T542T 0.31 TCGA-44-7667-01 14 94956004 94956004 C A SERPINA12 Missense_Mutation p.G336C 0.26 deleterious(0) probably_damaging(0.972) TCGA-44-7667-01 14 95090212 95090212 G C SERPINA3 3'UTR 0.13 TCGA-44-7667-01 15 20496752 20496752 T C CHEK2P2 RNA 0.15 TCGA-44-7667-01 15 22382684 22382684 C A OR4N4 Missense_Mutation p.A71E 0.11 deleterious(0) possibly_damaging(0.721) TCGA-44-7667-01 15 22473188 22473188 G T IGHV4OR15-8 Missense_Mutation p.P28Q 0.14 deleterious(0.01) possibly_damaging(0.868) TCGA-44-7667-01 15 33941303 33941303 G T RYR3 Nonsense_Mutation p.G1337* 0.23 TCGA-44-7667-01 15 49903438 49903438 C A FAM227B Nonsense_Mutation p.E27* 0.18 TCGA-44-7667-01 15 58834784 58834784 G T LIPC Missense_Mutation p.G170C 0.26 deleterious(0) probably_damaging(1) TCGA-44-7667-01 15 66807973 66807973 G C ZWILCH Missense_Mutation p.G104A 0.15 tolerated(0.71) benign(0.243) TCGA-44-7667-01 15 67768065 67768065 C G IQCH Missense_Mutation p.T903S 0.09 tolerated(1) benign(0.058) TCGA-44-7667-01 15 76074434 76074434 G A RN7SL319P 5'Flank 0.24 TCGA-44-7667-01 15 89738465 89738465 A T ABHD2 Silent p.R363R 0.17 TCGA-44-7667-01 16 15818569 15818569 G T MYH11 Missense_Mutation p.Q1358K 0.17 probably_damaging(0.994) TCGA-44-7667-01 16 25258513 25258513 T C ZKSCAN2 Missense_Mutation p.D335G 0.11 deleterious(0) probably_damaging(0.998) TCGA-44-7667-01 16 29994574 29994574 C T TAOK2 Missense_Mutation p.P394L 0.26 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-44-7667-01 16 31368412 31368412 C A ITGAX Missense_Mutation p.S103Y 0.23 deleterious(0.02) possibly_damaging(0.79) TCGA-44-7667-01 16 3642820 3642820 T A SLX4 Missense_Mutation p.Q736L 0.28 deleterious(0.05) probably_damaging(0.999) TCGA-44-7667-01 16 4812313 4812313 C A ZNF500 Nonsense_Mutation p.E208* 0.38 TCGA-44-7667-01 16 50733449 50733449 G A NOD2 Missense_Mutation p.V42I 0.10 deleterious(0.03) possibly_damaging(0.644) TCGA-44-7667-01 16 54967504 54967504 C G IRX5 Missense_Mutation p.P391A 0.15 tolerated(0.27) unknown(0) TCGA-44-7667-01 16 56666549 56666549 C T MT1M 5'UTR 0.44 TCGA-44-7667-01 16 58568148 58568148 T A CNOT1 Missense_Mutation p.Y1933F 0.34 tolerated(1) benign(0.005) TCGA-44-7667-01 16 77225496 77225496 G T MON1B Silent p.P38P 0.12 TCGA-44-7667-01 16 88644131 88644131 A G ZC3H18 Missense_Mutation p.I200M 0.10 tolerated_low_confidence(0.05) unknown(0) TCGA-44-7667-01 16 90095616 90095616 G T C16orf3 Silent p.A45A 0.23 TCGA-44-7667-01 16 90162236 90162236 G T TUBB8P7 RNA 0.09 TCGA-44-7667-01 17 21319267 21319267 C A KCNJ12 Missense_Mutation p.R205S 0.10 deleterious(0) probably_damaging(0.977) TCGA-44-7667-01 17 21319715 21319715 C A KCNJ12 Missense_Mutation p.T354K 0.15 deleterious(0) probably_damaging(0.986) TCGA-44-7667-01 17 21731176 21731176 C A UBBP4 Missense_Mutation p.L160M 0.26 deleterious(0) probably_damaging(0.979) TCGA-44-7667-01 17 26919183 26919183 C A SPAG5 Missense_Mutation p.R360L 0.43 deleterious(0.02) possibly_damaging(0.656) TCGA-44-7667-01 17 29541557 29541557 T A NF1 Nonsense_Mutation p.L494* 0.36 TCGA-44-7667-01 17 29657487 29657488 AA T NF1 Frame_Shift_Del p.E1928Vfs*14 0.20 TCGA-44-7667-01 17 3101552 3101552 T - OR1A2 Frame_Shift_Del p.L249Yfs*14 0.15 TCGA-44-7667-01 17 33591385 33591385 C G SLFN5 Missense_Mutation p.A441G 0.28 deleterious(0.03) possibly_damaging(0.839) TCGA-44-7667-01 17 39261651 39261651 C G KRTAP4-9 Missense_Mutation p.S4C 0.40 deleterious(0) unknown(0) TCGA-44-7667-01 17 39538444 39538444 G A KRT34 Missense_Mutation p.R61W 0.26 deleterious(0.02) probably_damaging(0.995) TCGA-44-7667-01 17 39596963 39596963 G T KRT38 Missense_Mutation p.P71T 0.30 tolerated(0.48) benign(0.005) TCGA-44-7667-01 17 39661352 39661352 C A KRT13 Missense_Mutation p.D151Y 0.42 deleterious(0) probably_damaging(1) TCGA-44-7667-01 17 39661353 39661353 C A KRT13 Silent p.R150R 0.42 TCGA-44-7667-01 17 3969745 3969745 G C ZZEF1 Missense_Mutation p.S1415R 0.10 tolerated(0.09) benign(0.002) TCGA-44-7667-01 17 40690472 40690472 C T NAGLU Missense_Mutation p.P216L 0.07 tolerated(0.4) benign(0.002) TCGA-44-7667-01 17 43923271 43923271 C T SPPL2C Silent p.T333T 0.29 TCGA-44-7667-01 17 51901335 51901335 G T KIF2B Missense_Mutation p.G314V 0.23 deleterious(0.01) probably_damaging(1) TCGA-44-7667-01 17 57232555 57232555 C G SKA2 5'UTR 0.44 TCGA-44-7667-01 17 62290241 62290241 G T TEX2 Missense_Mutation p.P446Q 0.39 tolerated(0.06) benign(0.271) TCGA-44-7667-01 17 64881046 64881046 G T CACNG5 Intron 0.19 TCGA-44-7667-01 17 71398169 71398169 C A SDK2 Nonsense_Mutation p.E866* 0.17 TCGA-44-7667-01 17 72781696 72781696 G T TMEM104 Missense_Mutation p.G41W 0.27 deleterious(0) probably_damaging(1) TCGA-44-7667-01 17 75208130 75208130 G A SEC14L1 Silent p.S570S 0.09 TCGA-44-7667-01 17 7577157 7577157 T A TP53 Splice_Site p.X261_splice 0.30 TCGA-44-7667-01 17 79986492 79986492 G A LRRC45 Missense_Mutation p.R414H 0.30 tolerated(0.06) benign(0.027) TCGA-44-7667-01 18 19146168 19146168 C T ESCO1 Splice_Site p.X549_splice 0.33 TCGA-44-7667-01 18 21735868 21735868 G A CABYR Missense_Mutation p.E135K 0.70 tolerated(0.33) benign(0.034) TCGA-44-7667-01 18 2763760 2763760 C T SMCHD1 Silent p.P1564P 0.11 TCGA-44-7667-01 18 31803030 31803030 T A NOL4 Missense_Mutation p.Q63L 0.47 deleterious(0.03) probably_damaging(0.961) TCGA-44-7667-01 18 51025789 51025789 C A DCC Missense_Mutation p.H1340Q 0.39 tolerated(0.09) possibly_damaging(0.838) TCGA-44-7667-01 18 56586785 56586785 G T ZNF532 Silent p.A422A 0.57 TCGA-44-7667-01 18 59157924 59157924 C G CDH20 Silent p.L46L 0.30 TCGA-44-7667-01 18 60609049 60609049 C G PHLPP1 Missense_Mutation p.T1020R 0.19 deleterious(0) probably_damaging(0.991) TCGA-44-7667-01 18 63548148 63548148 G A CDH7 3'UTR 0.55 TCGA-44-7667-01 18 66365215 66365215 C G TMX3 Missense_Mutation p.R149T 0.36 deleterious(0.01) possibly_damaging(0.87) TCGA-44-7667-01 18 6950887 6950895 GCGTAGTCT - LAMA1 In_Frame_Del p.D2762_A2764del 0.21 TCGA-44-7667-01 18 72344061 72344061 T G ZNF407 Silent p.V362V 0.23 TCGA-44-7667-01 19 10597495 10597495 C A KEAP1 Splice_Site p.X570_splice 0.60 TCGA-44-7667-01 19 12060148 12060148 G A ZNF700 Missense_Mutation p.G437S 0.18 tolerated(0.26) benign(0.166) TCGA-44-7667-01 19 13397780 13397780 T C CACNA1A Silent p.K1030K 0.67 TCGA-44-7667-01 19 15529825 15529825 T C AKAP8L 5'UTR 0.53 TCGA-44-7667-01 19 17091417 17091417 C T CPAMD8 Missense_Mutation p.G539D 0.05 deleterious(0) probably_damaging(0.999) TCGA-44-7667-01 19 17384795 17384795 G A BABAM1 Missense_Mutation p.E143K 0.12 deleterious(0) probably_damaging(0.982) TCGA-44-7667-01 19 17434337 17434337 C T ANO8 Missense_Mutation p.G1230S 0.08 deleterious_low_confidence(0.01) unknown(0) TCGA-44-7667-01 19 23938261 23938261 C A ZNF681 Silent p.V32V 0.21 TCGA-44-7667-01 19 33471061 33471061 G C RHPN2 Missense_Mutation p.I634M 0.18 tolerated(0.11) benign(0.418) TCGA-44-7667-01 19 3381910 3381910 G T NFIC Silent p.L77L 0.51 TCGA-44-7667-01 19 35450390 35450390 C A ZNF792 Missense_Mutation p.E123D 0.44 deleterious(0.01) benign(0.034) TCGA-44-7667-01 19 35842828 35842828 G A FFAR1 Missense_Mutation p.G125E 0.15 tolerated(0.27) possibly_damaging(0.632) TCGA-44-7667-01 19 36357308 36357308 C A KIRREL2 Missense_Mutation p.P681T 0.26 tolerated(0.2) benign(0.002) TCGA-44-7667-01 19 37643422 37643422 T C ZNF585A Missense_Mutation p.H405R 0.10 deleterious(0) probably_damaging(0.995) TCGA-44-7667-01 19 38798252 38798252 C A YIF1B Missense_Mutation p.G227V 0.09 deleterious(0) probably_damaging(0.997) TCGA-44-7667-01 19 38960151 38960151 G T RYR1 Nonsense_Mutation p.E1255* 0.43 TCGA-44-7667-01 19 38976684 38976684 C A RYR1 Missense_Mutation p.R1797S 0.60 benign(0.218) TCGA-44-7667-01 19 42713941 42713941 C T DEDD2 Missense_Mutation p.G167D 0.56 tolerated(0.16) benign(0.24) TCGA-44-7667-01 19 42713942 42713942 C A DEDD2 Missense_Mutation p.G167C 0.56 tolerated(0.16) benign(0.003) TCGA-44-7667-01 19 42875540 42875540 A T MEGF8 Missense_Mutation p.Q2325L 0.13 tolerated(0.77) benign(0.032) TCGA-44-7667-01 19 44471441 44471441 A C ZNF221 Missense_Mutation p.E596A 0.08 tolerated(0.13) benign(0.001) TCGA-44-7667-01 19 45322965 45322965 G A BCAM Missense_Mutation p.R582Q 0.21 tolerated(0.07) benign(0.007) TCGA-44-7667-01 19 47876924 47876924 G T DHX34 Silent p.L677L 0.48 TCGA-44-7667-01 19 48789422 48789422 G T ZNF114 Missense_Mutation p.G181W 0.48 tolerated(0.08) probably_damaging(0.965) TCGA-44-7667-01 19 49539443 49539443 C T CGB1 Missense_Mutation p.V43M 0.17 tolerated(0.08) probably_damaging(0.982) TCGA-44-7667-01 19 51165488 51165488 G T SHANK1 Missense_Mutation p.R2074S 0.36 unknown(0) TCGA-44-7667-01 19 51503889 51503889 G A KLK8 Silent p.P52P 0.26 TCGA-44-7667-01 19 51883400 51883400 C A LIM2 3'UTR 0.30 TCGA-44-7667-01 19 51885700 51885700 G T LIM2 Missense_Mutation p.F141L 0.15 tolerated(0.16) possibly_damaging(0.869) TCGA-44-7667-01 19 53762039 53762039 G C VN1R2 Missense_Mutation p.L137F 0.35 deleterious(0.02) probably_damaging(0.962) TCGA-44-7667-01 19 53793012 53793012 G A BIRC8 Missense_Mutation p.H206Y 0.17 deleterious(0) probably_damaging(1) TCGA-44-7667-01 19 53793612 53793612 C A BIRC8 Missense_Mutation p.A6S 0.55 tolerated(0.07) benign(0.434) TCGA-44-7667-01 19 53912868 53912868 A G ZNF765 3'UTR 0.47 TCGA-44-7667-01 19 53994626 53994626 G A ZNF813 Silent p.E380E 0.47 TCGA-44-7667-01 19 54418655 54418655 G T CACNG7 Missense_Mutation p.S107I 0.28 deleterious(0) probably_damaging(0.953) TCGA-44-7667-01 19 54784391 54784391 C A LILRB2 5'UTR 0.43 TCGA-44-7667-01 19 55021857 55021857 G T LAIR2 3'UTR 0.18 TCGA-44-7667-01 19 56369987 56369987 G A NLRP4 Missense_Mutation p.D410N 0.16 tolerated(0.37) benign(0.007) TCGA-44-7667-01 19 58042467 58042467 A T ZNF549 Missense_Mutation p.K21N 0.13 tolerated(0.25) benign(0) TCGA-44-7667-01 19 58189929 58189929 G A ZSCAN4 Missense_Mutation p.V320I 0.46 tolerated(1) benign(0.013) TCGA-44-7667-01 19 7977303 7977303 C T MAP2K7 Missense_Mutation p.P416L 0.50 deleterious_low_confidence(0) benign(0.027) TCGA-44-7667-01 1 103345402 103345402 G T COL11A1 Missense_Mutation p.A1704D 0.13 unknown(0) TCGA-44-7667-01 1 109793580 109793580 G A CELSR2 Silent p.E293E 0.07 TCGA-44-7667-01 1 11577528 11577528 C A PTCHD2 Silent p.A586A 0.37 TCGA-44-7667-01 1 12884858 12884858 C A PRAMEF11 Missense_Mutation p.C418F 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-44-7667-01 1 12907362 12907362 C A HNRNPCL1 Missense_Mutation p.D261Y 0.06 deleterious(0) probably_damaging(0.926) TCGA-44-7667-01 1 145368636 145368636 G C NBPF10 Silent p.V3538V 0.29 TCGA-44-7667-01 1 145474248 145474248 G T ANKRD34A Missense_Mutation p.S307I 0.30 tolerated(0.11) benign(0) TCGA-44-7667-01 1 151280136 151280136 G - PI4KB Frame_Shift_Del p.R378Efs*33 0.12 TCGA-44-7667-01 1 152276103 152276103 C A FLG Missense_Mutation p.E3753D 0.21 unknown(0) TCGA-44-7667-01 1 152326750 152326750 G T FLG2 Missense_Mutation p.S1171Y 0.23 unknown(0) TCGA-44-7667-01 1 155254959 155254959 A G HCN3 Missense_Mutation p.K365E 0.33 deleterious(0) benign(0.014) TCGA-44-7667-01 1 157718359 157718359 C G FCRL2 Missense_Mutation p.Q481H 0.13 tolerated(0.09) possibly_damaging(0.496) TCGA-44-7667-01 1 158390612 158390612 G A OR10K2 Silent p.L15L 0.24 TCGA-44-7667-01 1 158984735 158984735 G C IFI16 Missense_Mutation p.V89L 0.06 deleterious(0.02) benign(0.051) TCGA-44-7667-01 1 16560187 16560187 C T RSG1 Missense_Mutation p.G62E 0.10 deleterious(0) probably_damaging(0.997) TCGA-44-7667-01 1 168670315 168670315 A G DPT Missense_Mutation p.I160T 0.08 tolerated(0.17) benign(0.015) TCGA-44-7667-01 1 169762232 169762232 C G METTL18 Missense_Mutation p.G202A 0.12 deleterious(0) probably_damaging(0.994) TCGA-44-7667-01 1 171482185 171482185 G A PRRC2C Missense_Mutation p.R53H 0.16 unknown(0) TCGA-44-7667-01 1 171509669 171509669 G T PRRC2C Missense_Mutation p.V1020L 0.11 unknown(0) TCGA-44-7667-01 1 17331936 17331936 C A ATP13A2 Missense_Mutation p.R74L 0.50 tolerated(0.32) benign(0.018) TCGA-44-7667-01 1 175362963 175362963 G T TNR Missense_Mutation p.P437T 0.32 deleterious(0) probably_damaging(1) TCGA-44-7667-01 1 179399720 179399720 T C AXDND1 Missense_Mutation p.I489T 0.14 tolerated(0.61) benign(0) TCGA-44-7667-01 1 179815614 179815614 C A TOR1AIP2 Missense_Mutation p.R335S 0.11 deleterious(0.02) possibly_damaging(0.89) TCGA-44-7667-01 1 205131163 205131163 C A DSTYK Splice_Site p.X606_splice 0.11 TCGA-44-7667-01 1 214814216 214814216 G T CENPF Missense_Mutation p.M845I 0.07 benign(0.007) TCGA-44-7667-01 1 215847758 215847758 G T USH2A Missense_Mutation p.L4499I 0.10 probably_damaging(0.954) TCGA-44-7667-01 1 216373105 216373105 G T USH2A Missense_Mutation p.S1225R 0.11 probably_damaging(0.944) TCGA-44-7667-01 1 22165395 22165395 T A HSPG2 Missense_Mutation p.E3358V 0.47 benign(0.063) TCGA-44-7667-01 1 223283708 223283708 C A TLR5 3'UTR 0.50 TCGA-44-7667-01 1 223283709 223283709 C A TLR5 3'UTR 0.47 TCGA-44-7667-01 1 22987407 22987407 C T C1QB Missense_Mutation p.P97L 0.07 tolerated(0.16) possibly_damaging(0.464) TCGA-44-7667-01 1 231131652 231131652 T C ARV1 Missense_Mutation p.W199R 0.22 deleterious(0) probably_damaging(1) TCGA-44-7667-01 1 231339744 231339744 G T TRIM67 Missense_Mutation p.G556W 0.17 deleterious(0) probably_damaging(1) TCGA-44-7667-01 1 23648084 23648084 C G HNRNPR Missense_Mutation p.V250L 0.04 tolerated(0.08) benign(0.399) TCGA-44-7667-01 1 237730043 237730043 G T RYR2 Missense_Mutation p.D1131Y 0.14 probably_damaging(1) TCGA-44-7667-01 1 247492125 247492125 C A ZNF496 Missense_Mutation p.S145I 0.14 tolerated(0.14) benign(0.223) TCGA-44-7667-01 1 247769130 247769130 C T OR2G3 Silent p.T81T 0.09 TCGA-44-7667-01 1 247978659 247978659 A T OR14A16 Missense_Mutation p.C125S 0.31 deleterious(0.03) probably_damaging(0.951) TCGA-44-7667-01 1 247978926 247978926 C A OR14A16 Missense_Mutation p.A36S 0.33 tolerated(0.06) possibly_damaging(0.48) TCGA-44-7667-01 1 248112883 248112883 A T OR2L8 Missense_Mutation p.T242S 0.19 tolerated(1) benign(0.028) TCGA-44-7667-01 1 27099370 27099370 A T ARID1A Missense_Mutation p.N1203Y 0.13 unknown(0) TCGA-44-7667-01 1 29010251 29010251 G T GMEB1 Missense_Mutation p.G43C 0.40 deleterious(0) probably_damaging(0.936) TCGA-44-7667-01 1 36299598 36299598 A T AGO4 Missense_Mutation p.T463S 0.31 tolerated(0.11) benign(0.045) TCGA-44-7667-01 1 38079564 38079564 G A RSPO1 Missense_Mutation p.A146V 0.48 tolerated(0.97) benign(0.005) TCGA-44-7667-01 1 40131283 40131283 G T NT5C1A Missense_Mutation p.P115T 0.24 deleterious(0) probably_damaging(0.99) TCGA-44-7667-01 1 40131284 40131284 G T NT5C1A Nonsense_Mutation p.Y114* 0.20 TCGA-44-7667-01 1 45474216 45474216 G T HECTD3 Silent p.L410L 0.25 TCGA-44-7667-01 1 45484449 45484449 G T ZSWIM5 Silent p.R1079R 0.61 TCGA-44-7667-01 1 59248487 59248487 C A JUN Missense_Mutation p.G86W 0.42 deleterious(0) probably_damaging(1) TCGA-44-7667-01 1 66458793 66458793 G T PDE4B Intron 0.49 TCGA-44-7667-01 1 67845698 67845698 C A IL12RB2 Missense_Mutation p.H583N 0.49 deleterious(0.02) possibly_damaging(0.574) TCGA-44-7667-01 1 7837301 7837301 G T VAMP3 Missense_Mutation p.A52S 0.55 deleterious_low_confidence(0) possibly_damaging(0.495) TCGA-44-7667-01 1 79102763 79102763 C - IFI44L Frame_Shift_Del p.S309Lfs*4 0.09 TCGA-44-7667-01 1 87025657 87025657 G C CLCA4 Missense_Mutation p.E68Q 0.09 tolerated(0.16) benign(0.314) TCGA-44-7667-01 1 87036772 87036772 C A CLCA4 Missense_Mutation p.L399I 0.11 tolerated(0.12) benign(0.012) TCGA-44-7667-01 1 92979323 92979323 C T EVI5 Missense_Mutation p.G775S 0.40 tolerated_low_confidence(0.74) benign(0.006) TCGA-44-7667-01 1 99167426 99167426 A C SNX7 Missense_Mutation p.E364D 0.12 tolerated(0.21) benign(0.044) TCGA-44-7667-01 20 13279910 13279910 C G ISM1 Missense_Mutation p.A400G 0.36 deleterious(0) probably_damaging(1) TCGA-44-7667-01 20 2411240 2411240 C A TGM6 Silent p.T609T 0.23 TCGA-44-7667-01 20 25300871 25300871 G C ABHD12 Missense_Mutation p.P169R 0.11 deleterious(0) probably_damaging(0.996) TCGA-44-7667-01 20 30584719 30584719 G T XKR7 Missense_Mutation p.G400V 0.33 tolerated(0.13) possibly_damaging(0.516) TCGA-44-7667-01 20 31878785 31878785 G C BPIFB1 Missense_Mutation p.E130Q 0.29 tolerated(0.19) benign(0.441) TCGA-44-7667-01 20 3673738 3673738 G T SIGLEC1 Missense_Mutation p.S1183R 0.22 tolerated(0.06) benign(0.151) TCGA-44-7667-01 20 37353316 37353316 G T SLC32A1 5'UTR 0.20 TCGA-44-7667-01 20 49225886 49225886 C T FAM65C Nonsense_Mutation p.W191* 0.17 TCGA-44-7667-01 20 50255995 50255995 G - ATP9A Frame_Shift_Del p.R519Efs*8 0.21 TCGA-44-7667-01 20 61513452 61513452 G A DIDO1 Missense_Mutation p.P1286S 0.09 benign(0.001) TCGA-44-7667-01 20 62595516 62595516 C A ZNF512B Missense_Mutation p.G463V 0.36 tolerated(0.09) benign(0.016) TCGA-44-7667-01 20 8862413 8862413 C A PLCB1 Missense_Mutation p.P1190T 0.20 tolerated(0.29) benign(0.006) TCGA-44-7667-01 20 8862414 8862414 C A PLCB1 Missense_Mutation p.P1190H 0.20 deleterious(0.02) benign(0.078) TCGA-44-7667-01 20 9288539 9288539 C G PLCB4 Nonsense_Mutation p.Y26* 0.57 TCGA-44-7667-01 21 16339770 16339770 T A NRIP1 Missense_Mutation p.E248D 0.16 tolerated(0.06) probably_damaging(0.993) TCGA-44-7667-01 21 31720769 31720769 G T KRTAP23-1 Silent p.L52L 0.25 TCGA-44-7667-01 21 31802740 31802740 G T KRTAP13-4 Missense_Mutation p.R49S 0.22 tolerated(1) benign(0.023) TCGA-44-7667-01 21 32638884 32638884 G T TIAM1 Nonsense_Mutation p.Y135* 0.25 TCGA-44-7667-01 21 33678945 33678945 C A MRAP Intron 0.16 TCGA-44-7667-01 21 34635849 34635849 G C IFNAR2 3'UTR 0.26 TCGA-44-7667-01 21 39086536 39086536 T C KCNJ6 Silent p.L308L 0.28 TCGA-44-7667-01 21 45948417 45948417 C T TSPEAR Silent p.V280V 0.28 TCGA-44-7667-01 22 21237785 21237785 G T SNAP29 Missense_Mutation p.A183S 0.04 tolerated(0.35) benign(0.061) TCGA-44-7667-01 22 23135477 23135477 A T IGLV2-11 Silent p.A113A 0.23 TCGA-44-7667-01 22 29695615 29695615 G T EWSR1 Missense_Mutation p.G574C 0.19 deleterious_low_confidence(0) unknown(0) TCGA-44-7667-01 22 31985511 31985511 C A SFI1 Silent p.R498R 0.24 TCGA-44-7667-01 22 39497936 39497937 - T APOBEC3H Frame_Shift_Ins p.W145Lfs*17 0.27 TCGA-44-7667-01 22 39883636 39883636 G T MGAT3 Missense_Mutation p.R95L 0.32 tolerated_low_confidence(0.09) benign(0.007) TCGA-44-7667-01 22 40078529 40078529 G T CACNA1I Missense_Mutation p.R1898L 0.21 tolerated(0.24) benign(0.003) TCGA-44-7667-01 22 40161345 40161345 A G ENTHD1 Missense_Mutation p.S368P 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-44-7667-01 22 40814546 40814546 G A MKL1 Silent p.P632P 0.20 TCGA-44-7667-01 22 41077234 41077234 A G MCHR1 Missense_Mutation p.M191V 0.24 tolerated(0.17) benign(0.243) TCGA-44-7667-01 22 44237700 44237700 C T SULT4A1 Silent p.P94P 0.31 TCGA-44-7667-01 22 44280198 44280198 G T PNPLA5 Missense_Mutation p.P326H 0.30 tolerated(0.1) benign(0.004) TCGA-44-7667-01 22 50646945 50646945 G A SELO Intron 0.23 TCGA-44-7667-01 22 51183253 51183253 G T ACR Missense_Mutation p.R295L 0.22 tolerated(0.14) benign(0.086) TCGA-44-7667-01 2 10350513 10350513 G T C2orf48 Silent p.P90P 0.46 TCGA-44-7667-01 2 108487926 108487926 C G RGPD4 Missense_Mutation p.L1156V 0.08 tolerated(0.19) possibly_damaging(0.779) TCGA-44-7667-01 2 108604577 108604577 G T SLC5A7 5'UTR 0.12 TCGA-44-7667-01 2 109088072 109088072 C G GCC2 Missense_Mutation p.L763V 0.16 deleterious(0.03) probably_damaging(0.991) TCGA-44-7667-01 2 110259077 110259077 C A SH3RF3 Intron 0.21 TCGA-44-7667-01 2 112605391 112605391 C T ANAPC1 Missense_Mutation p.D568N 0.08 tolerated(0.51) benign(0.357) TCGA-44-7667-01 2 128390907 128390907 A G MYO7B Missense_Mutation p.H1801R 0.11 deleterious(0) probably_damaging(0.996) TCGA-44-7667-01 2 131520173 131520173 G T AMER3 Silent p.S176S 0.23 TCGA-44-7667-01 2 131520682 131520682 G T AMER3 Missense_Mutation p.G346V 0.44 tolerated(0.07) benign(0.438) TCGA-44-7667-01 2 132021821 132021821 C A POTEE Silent p.A931A 0.13 TCGA-44-7667-01 2 132236926 132236926 A G TUBA3D Missense_Mutation p.Q91R 0.37 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-44-7667-01 2 132508307 132508307 T C C2orf27A 5'UTR 0.48 TCGA-44-7667-01 2 137852671 137852671 A C THSD7B Missense_Mutation p.E393D 0.14 tolerated(1) possibly_damaging(0.764) TCGA-44-7667-01 2 138000066 138000066 T A THSD7B Nonsense_Mutation p.C730* 0.43 TCGA-44-7667-01 2 144966278 144966278 T A GTDC1 Missense_Mutation p.E24V 0.10 deleterious(0.03) probably_damaging(0.986) TCGA-44-7667-01 2 145156129 145156129 C A ZEB2 Silent p.L875L 0.39 TCGA-44-7667-01 2 1488432 1488432 G A TPO Missense_Mutation p.G468D 0.31 deleterious(0) probably_damaging(1) TCGA-44-7667-01 2 168105385 168105385 G T XIRP2 Missense_Mutation p.D2495Y 0.35 benign(0.052) TCGA-44-7667-01 2 168114371 168114371 G T XIRP2 3'UTR 0.14 TCGA-44-7667-01 2 169574401 169574402 - T CERS6 Frame_Shift_Ins p.A254Cfs*8 0.34 TCGA-44-7667-01 2 176948543 176948543 C A EVX2 5'UTR 0.13 TCGA-44-7667-01 2 179631224 179631224 T C TTN Missense_Mutation p.Y3196C 0.08 TCGA-44-7667-01 2 179654843 179654843 C A TTN Splice_Site p.X601_splice 0.40 TCGA-44-7667-01 2 187702207 187702207 G T ZSWIM2 Missense_Mutation p.S190Y 0.19 deleterious(0) probably_damaging(0.943) TCGA-44-7667-01 2 192261175 192261175 G A MYO1B Silent p.Q749Q 0.13 TCGA-44-7667-01 2 203329636 203329636 T A BMPR2 Missense_Mutation p.S61T 0.20 tolerated(0.54) benign(0.007) TCGA-44-7667-01 2 210560055 210560055 G T MAP2 Missense_Mutation p.G1054V 0.14 tolerated_low_confidence(0.26) benign(0.438) TCGA-44-7667-01 2 212589910 212589910 G A ERBB4 Missense_Mutation p.T211M 0.14 tolerated(0.22) possibly_damaging(0.801) TCGA-44-7667-01 2 215440444 215440444 T G VWC2L Missense_Mutation p.V190G 0.23 deleterious(0) probably_damaging(0.967) TCGA-44-7667-01 2 217124231 217124231 G T MARCH4 Missense_Mutation p.S346Y 0.17 tolerated(0.44) benign(0.146) TCGA-44-7667-01 2 224462111 224462111 G A SCG2 3'UTR 0.40 TCGA-44-7667-01 2 241404605 241404605 T G GPC1 Missense_Mutation p.W416G 0.23 deleterious(0) probably_damaging(1) TCGA-44-7667-01 2 242078153 242078153 C A PASK Missense_Mutation p.R219S 0.11 deleterious(0) benign(0.391) TCGA-44-7667-01 2 242149780 242149780 G A ANO7 Missense_Mutation p.R531K 0.11 tolerated(0.71) benign(0.009) TCGA-44-7667-01 2 242758149 242758149 G T NEU4 Missense_Mutation p.W423C 0.40 deleterious(0) probably_damaging(0.963) TCGA-44-7667-01 2 29006809 29006809 G A PPP1CB Missense_Mutation p.R186Q 0.24 tolerated_low_confidence(0.08) benign(0.335) TCGA-44-7667-01 2 33747032 33747032 G A RASGRP3 Missense_Mutation p.D127N 0.22 tolerated(0.06) probably_damaging(0.956) TCGA-44-7667-01 2 39249965 39249965 T C SOS1 Missense_Mutation p.N535S 0.47 tolerated(0.27) benign(0.021) TCGA-44-7667-01 2 70314938 70314938 C G PCBP1 Missense_Mutation p.H21Q 0.30 tolerated(0.24) probably_damaging(0.985) TCGA-44-7667-01 2 71591219 71591219 G C ZNF638 Silent p.P518P 0.39 TCGA-44-7667-01 2 75113632 75113632 C T HK2 Missense_Mutation p.A684V 0.19 tolerated(0.08) benign(0.014) TCGA-44-7667-01 2 89476584 89476584 G T IGKV2-24 Missense_Mutation p.L11I 0.14 deleterious(0) probably_damaging(0.995) TCGA-44-7667-01 2 96795647 96795647 G T ASTL Silent p.R264R 0.14 TCGA-44-7667-01 3 10392234 10392234 G T ATP2B2 Silent p.R722R 0.14 TCGA-44-7667-01 3 108813842 108813842 A G MORC1 Missense_Mutation p.M166T 0.73 tolerated(1) benign(0) TCGA-44-7667-01 3 10885978 10885978 G T SLC6A11 Missense_Mutation p.A235S 0.07 tolerated(0.21) probably_damaging(0.998) TCGA-44-7667-01 3 111681059 111681059 G T PHLDB2 Missense_Mutation p.D993Y 0.14 deleterious(0.02) probably_damaging(0.945) TCGA-44-7667-01 3 113002307 113002307 C A BOC Silent p.A827A 0.37 TCGA-44-7667-01 3 113092327 113092327 T A WDR52 Missense_Mutation p.K792I 0.20 tolerated(0.11) benign(0.075) TCGA-44-7667-01 3 129195584 129195584 T C IFT122 Missense_Mutation p.Y414H 0.11 deleterious(0) probably_damaging(0.999) TCGA-44-7667-01 3 129252498 129252498 G A RHO Silent p.L328L 0.05 TCGA-44-7667-01 3 130452432 130452432 T A PIK3R4 Missense_Mutation p.L470F 0.10 deleterious(0.01) possibly_damaging(0.839) TCGA-44-7667-01 3 138664549 138664549 C G FOXL2 Missense_Mutation p.S339T 0.17 deleterious_low_confidence(0.01) unknown(0) TCGA-44-7667-01 3 142272122 142272122 T C ATR Missense_Mutation p.K918E 0.15 deleterious(0.01) possibly_damaging(0.701) TCGA-44-7667-01 3 142561780 142561780 C A PCOLCE2 Missense_Mutation p.A187S 0.54 deleterious(0.02) probably_damaging(0.974) TCGA-44-7667-01 3 159711625 159711625 G T IL12A Silent p.L200L 0.16 TCGA-44-7667-01 3 27758988 27758988 A C EOMES Missense_Mutation p.L545W 0.48 deleterious(0) probably_damaging(0.976) TCGA-44-7667-01 3 37366780 37366780 C T GOLGA4 Missense_Mutation p.H1157Y 0.58 benign(0.15) TCGA-44-7667-01 3 382570 382570 C G CHL1 Missense_Mutation p.P160R 0.38 deleterious(0) probably_damaging(0.998) TCGA-44-7667-01 3 423918 423918 C A CHL1 Silent p.R645R 0.13 TCGA-44-7667-01 3 44803278 44803278 C G KIF15 5'UTR 0.45 TCGA-44-7667-01 3 44867569 44867569 T C KIF15 Missense_Mutation p.L863P 0.54 deleterious(0) possibly_damaging(0.905) TCGA-44-7667-01 3 73657834 73657834 C A PDZRN3 Missense_Mutation p.G242V 0.27 deleterious(0.02) benign(0.044) TCGA-44-7667-01 3 87322560 87322560 G T POU1F1 Missense_Mutation p.L77I 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-7667-01 3 9517226 9517226 C T SETD5 Silent p.S1260S 0.41 TCGA-44-7667-01 3 98109954 98109954 T C OR5K3 Missense_Mutation p.Y149H 0.17 deleterious(0.01) benign(0.429) TCGA-44-7667-01 4 100205673 100205673 G T ADH1A Nonsense_Mutation p.Y150* 0.39 TCGA-44-7667-01 4 109784531 109784531 C T COL25A1 Missense_Mutation p.E366K 0.12 tolerated(0.15) possibly_damaging(0.634) TCGA-44-7667-01 4 114276175 114276175 C A ANK2 Missense_Mutation p.T2134N 0.45 probably_damaging(1) TCGA-44-7667-01 4 126242649 126242649 A C FAT4 Missense_Mutation p.I1695L 0.09 benign(0.027) TCGA-44-7667-01 4 151505160 151505160 T A MAB21L2 Missense_Mutation p.F327I 0.45 deleterious(0.01) possibly_damaging(0.803) TCGA-44-7667-01 4 155305557 155305557 C A DCHS2 Missense_Mutation p.S66I 0.35 tolerated(0.21) benign(0.026) TCGA-44-7667-01 4 15780059 15780059 C A CD38 Missense_Mutation p.P8T 0.06 tolerated(0.36) benign(0.321) TCGA-44-7667-01 4 164271630 164271630 A T NPY5R Nonsense_Mutation p.K69* 0.12 TCGA-44-7667-01 4 166141117 166141117 G T KLHL2 Missense_Mutation p.D24Y 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.55) TCGA-44-7667-01 4 167022049 167022049 C A TLL1 3'UTR 0.30 TCGA-44-7667-01 4 184210685 184210685 G A WWC2 Missense_Mutation p.R1094Q 0.12 tolerated(0.13) benign(0.033) TCGA-44-7667-01 4 2746465 2746465 G C TNIP2 Missense_Mutation p.R289G 0.12 deleterious(0.03) possibly_damaging(0.654) TCGA-44-7667-01 4 44177175 44177175 A G KCTD8 Missense_Mutation p.C352R 0.44 tolerated(0.37) benign(0.307) TCGA-44-7667-01 4 48636308 48636308 C A FRYL Missense_Mutation p.L40F 0.49 tolerated(0.06) benign(0.362) TCGA-44-7667-01 4 5564793 5564793 C G EVC2 Missense_Mutation p.G1237R 0.30 tolerated(0.26) probably_damaging(0.985) TCGA-44-7667-01 4 6066717 6066717 A C JAKMIP1 Missense_Mutation p.F441V 0.08 deleterious(0.03) possibly_damaging(0.493) TCGA-44-7667-01 4 83849377 83849377 T G LIN54 Missense_Mutation p.K710Q 0.16 tolerated(0.37) benign(0.047) TCGA-44-7667-01 4 88584434 88584434 G A DMP1 Missense_Mutation p.G502R 0.47 deleterious(0) unknown(0) TCGA-44-7667-01 4 88584435 88584435 G T DMP1 Missense_Mutation p.G502V 0.49 tolerated(0.07) unknown(0) TCGA-44-7667-01 4 94316766 94316766 C A GRID2 Nonsense_Mutation p.C418* 0.50 TCGA-44-7667-01 5 102309956 102309956 G C PAM Missense_Mutation p.K433N 0.11 deleterious(0.03) probably_damaging(0.99) TCGA-44-7667-01 5 11111032 11111032 T A CTNND2 Nonsense_Mutation p.K801* 0.37 TCGA-44-7667-01 5 118485175 118485175 C T DMXL1 Missense_Mutation p.S1218F 0.18 deleterious(0) probably_damaging(0.999) TCGA-44-7667-01 5 118486002 118486002 C T DMXL1 Missense_Mutation p.L1494F 0.20 deleterious(0.03) probably_damaging(0.973) TCGA-44-7667-01 5 118965348 118965348 G A FAM170A 5'UTR 0.10 TCGA-44-7667-01 5 120021925 120021925 C G PRR16 Missense_Mutation p.P123A 0.22 tolerated_low_confidence(0.59) benign(0.234) TCGA-44-7667-01 5 122734946 122734946 C A CEP120 Missense_Mutation p.D166Y 0.20 deleterious(0.02) possibly_damaging(0.56) TCGA-44-7667-01 5 123980334 123980334 C T ZNF608 Nonsense_Mutation p.W1242* 0.27 TCGA-44-7667-01 5 127730897 127730897 C T FBN2 Missense_Mutation p.M383I 0.26 tolerated(0.26) benign(0.124) TCGA-44-7667-01 5 129072933 129072933 C A ADAMTS19 3'UTR 0.33 TCGA-44-7667-01 5 132561401 132561401 T C FSTL4 Missense_Mutation p.K376E 0.15 deleterious(0) probably_damaging(0.996) TCGA-44-7667-01 5 140176173 140176173 G T PCDHA2 Missense_Mutation p.V542L 0.32 tolerated_low_confidence(0.15) benign(0.071) TCGA-44-7667-01 5 140229863 140229863 C T PCDHA9 Missense_Mutation p.R595C 0.11 deleterious_low_confidence(0.02) probably_damaging(0.987) TCGA-44-7667-01 5 140529820 140529820 G T PCDHB6 5'Flank 0.28 TCGA-44-7667-01 5 140552519 140552519 G T PCDHB7 Missense_Mutation p.V35L 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.522) TCGA-44-7667-01 5 140590506 140590506 C T PCDHB12 Missense_Mutation p.A676V 0.14 tolerated_low_confidence(1) benign(0.005) TCGA-44-7667-01 5 140773003 140773003 A G PCDHGA8 Missense_Mutation p.H208R 0.29 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-44-7667-01 5 140774465 140774465 G T PCDHGA8 Silent p.V695V 0.32 TCGA-44-7667-01 5 141336067 141336067 G T PCDH12 Silent p.I450I 0.28 TCGA-44-7667-01 5 147051255 147051255 G A JAKMIP2 Nonsense_Mutation p.Q39* 0.20 TCGA-44-7667-01 5 154396290 154396290 A G KIF4B Silent p.Q957Q 0.11 TCGA-44-7667-01 5 156464287 156464287 A C HAVCR1 Missense_Mutation p.L308R 0.12 deleterious(0) probably_damaging(0.955) TCGA-44-7667-01 5 156484956 156484956 A T HAVCR1 5'UTR 0.17 TCGA-44-7667-01 5 156675975 156675975 C A ITK Silent p.A583A 0.20 TCGA-44-7667-01 5 161128501 161128501 C T GABRA6 Intron 0.28 TCGA-44-7667-01 5 167850742 167850742 G T WWC1 Silent p.R493R 0.18 TCGA-44-7667-01 5 169494579 169494579 G A DOCK2 Missense_Mutation p.M1511I 0.14 tolerated(0.05) benign(0.046) TCGA-44-7667-01 5 175533569 175533569 G T FAM153B Missense_Mutation p.V203L 0.15 deleterious_low_confidence(0.04) benign(0.198) TCGA-44-7667-01 5 176070229 176070229 C A EIF4E1B Silent p.P54P 0.18 TCGA-44-7667-01 5 176867988 176867988 G T GRK6 Silent p.L537L 0.20 TCGA-44-7667-01 5 180582280 180582280 G T OR2V2 Missense_Mutation p.G113V 0.26 tolerated(0.07) probably_damaging(1) TCGA-44-7667-01 5 19839097 19839097 G T CDH18 5'UTR 0.37 TCGA-44-7667-01 5 21752263 21752263 G T CDH12 Missense_Mutation p.N656K 0.41 deleterious(0) probably_damaging(1) TCGA-44-7667-01 5 24487944 24487944 G T CDH10 Nonsense_Mutation p.S732* 0.29 TCGA-44-7667-01 5 32233968 32233968 C T MTMR12 Missense_Mutation p.E529K 0.10 tolerated(0.22) benign(0.146) TCGA-44-7667-01 5 33937183 33937183 G A RXFP3 Missense_Mutation p.R113H 0.34 tolerated(0.08) benign(0.429) TCGA-44-7667-01 5 34998832 34998832 C A AGXT2 Missense_Mutation p.A513S 0.07 tolerated_low_confidence(0.11) benign(0.005) TCGA-44-7667-01 5 38370470 38370470 C G EGFLAM Silent p.L206L 0.42 TCGA-44-7667-01 5 38482707 38482707 T A LIFR Missense_Mutation p.Q885L 0.26 tolerated(0.17) possibly_damaging(0.597) TCGA-44-7667-01 5 49707098 49707098 C A EMB Missense_Mutation p.D106Y 0.29 deleterious(0) possibly_damaging(0.894) TCGA-44-7667-01 5 63256904 63256904 A G HTR1A Missense_Mutation p.Y215H 0.25 deleterious(0) probably_damaging(1) TCGA-44-7667-01 5 70805306 70805306 A G BDP1 Missense_Mutation p.N796S 0.27 tolerated(0.48) benign(0.061) TCGA-44-7667-01 5 80511762 80511762 A G RASGRF2 Missense_Mutation p.E1141G 0.24 deleterious(0) probably_damaging(0.967) TCGA-44-7667-01 5 83549941 83549941 C A EDIL3 Missense_Mutation p.G53C 0.30 deleterious(0) probably_damaging(0.966) TCGA-44-7667-01 5 94872822 94872822 T A TTC37 Silent p.A189A 0.11 TCGA-44-7667-01 5 95728882 95728882 G T PCSK1 Silent p.I695I 0.20 TCGA-44-7667-01 5 96224887 96224887 A T ERAP2 Splice_Site p.X284_splice 0.30 TCGA-44-7667-01 6 108501583 108501583 G T NR2E1 Missense_Mutation p.W233C 0.29 deleterious(0) probably_damaging(0.983) TCGA-44-7667-01 6 110037688 110037688 G T FIG4 Missense_Mutation p.R69L 0.26 tolerated(0.12) benign(0.142) TCGA-44-7667-01 6 132636912 132636912 C A MOXD1 Missense_Mutation p.G457V 0.19 deleterious(0.01) probably_damaging(0.962) TCGA-44-7667-01 6 137814988 137814988 C T OLIG3 Missense_Mutation p.R107H 0.25 deleterious(0) probably_damaging(0.997) TCGA-44-7667-01 6 139583811 139583811 G T TXLNB Missense_Mutation p.Q263K 0.21 deleterious(0) probably_damaging(0.99) TCGA-44-7667-01 6 146755228 146755228 G T GRM1 Nonsense_Mutation p.E961* 0.22 TCGA-44-7667-01 6 149730712 149730712 G T TAB2 Splice_Site p.X647_splice 0.18 TCGA-44-7667-01 6 150268526 150268526 C T ULBP2 Silent p.L234L 0.12 TCGA-44-7667-01 6 151744707 151744707 T C RMND1 Missense_Mutation p.D297G 0.11 deleterious(0) possibly_damaging(0.809) TCGA-44-7667-01 6 151894619 151894619 G C CCDC170 Missense_Mutation p.R362T 0.30 deleterious(0.03) benign(0.211) TCGA-44-7667-01 6 158288666 158288666 G T SNX9 Splice_Site p.X33_splice 0.31 TCGA-44-7667-01 6 158924188 158924188 C T TULP4 Nonsense_Mutation p.R1165* 0.21 TCGA-44-7667-01 6 158924189 158924189 G C TULP4 Missense_Mutation p.R1165P 0.21 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-44-7667-01 6 166575945 166575945 G T T Missense_Mutation p.N298K 0.32 tolerated(0.11) benign(0.103) TCGA-44-7667-01 6 25727344 25727344 G A HIST1H2BA Missense_Mutation p.D70N 0.15 deleterious_low_confidence(0.04) probably_damaging(0.996) TCGA-44-7667-01 6 26217423 26217423 A T HIST1H2AE Missense_Mutation p.N74I 0.09 deleterious_low_confidence(0.03) possibly_damaging(0.755) TCGA-44-7667-01 6 2679629 2679629 C A MYLK4 Nonsense_Mutation p.E258* 0.37 TCGA-44-7667-01 6 28227392 28227392 C T NKAPL Silent p.Y81Y 0.09 TCGA-44-7667-01 6 29571327 29571327 T C GABBR1 Missense_Mutation p.Y960C 0.30 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-44-7667-01 6 30515033 30515033 G C GNL1 Missense_Mutation p.P433A 0.06 deleterious(0) probably_damaging(1) TCGA-44-7667-01 6 31321954 31321954 C A HLA-B 3'UTR 0.38 TCGA-44-7667-01 6 32053672 32053672 C A TNXB Silent p.P1001P 0.19 TCGA-44-7667-01 6 32137057 32137057 C A AGPAT1 Missense_Mutation p.G283V 0.25 deleterious_low_confidence(0) unknown(0) TCGA-44-7667-01 6 33283774 33283774 G A ZBTB22 Missense_Mutation p.P307L 0.20 deleterious_low_confidence(0) benign(0.143) TCGA-44-7667-01 6 36168953 36168953 G A BRPF3 Missense_Mutation p.G285E 0.37 deleterious(0.05) probably_damaging(1) TCGA-44-7667-01 6 37606412 37606412 G T MDGA1 Missense_Mutation p.N856K 0.39 deleterious(0.02) benign(0.41) TCGA-44-7667-01 6 47846263 47846263 G A PTCHD4 Missense_Mutation p.L773F 0.55 deleterious(0) possibly_damaging(0.681) TCGA-44-7667-01 6 56362216 56362216 A T DST Silent p.G4105G 0.09 TCGA-44-7667-01 6 71009778 71009778 C T COL9A1 Silent p.L89L 0.04 TCGA-44-7667-01 6 75890796 75890796 C A COL12A1 Missense_Mutation p.V675F 0.75 benign(0.002) TCGA-44-7667-01 6 93969119 93969119 T A EPHA7 Missense_Mutation p.K626M 0.33 deleterious(0) probably_damaging(0.966) TCGA-44-7667-01 7 100189329 100189329 G A FBXO24 Missense_Mutation p.R159H 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.522) TCGA-44-7667-01 7 100552963 100552963 G A MUC3A Silent p.Q536Q 0.11 TCGA-44-7667-01 7 102065499 102065499 G T PRKRIP1 Missense_Mutation p.A166S 0.32 tolerated(0.71) possibly_damaging(0.694) TCGA-44-7667-01 7 106508180 106508180 G T PIK3CG Silent p.L58L 0.14 TCGA-44-7667-01 7 107599871 107599871 C A LAMB1 Missense_Mutation p.G838V 0.50 deleterious(0) probably_damaging(1) TCGA-44-7667-01 7 107752255 107752255 C A LAMB4 Splice_Site p.X110_splice 0.15 TCGA-44-7667-01 7 121699934 121699934 G C PTPRZ1 Missense_Mutation p.A2267P 0.52 deleterious(0) benign(0.145) TCGA-44-7667-01 7 131848984 131848984 G T PLXNA4 Missense_Mutation p.P1473T 0.52 deleterious(0.02) probably_damaging(1) TCGA-44-7667-01 7 136938254 136938254 G T PTN Silent p.T82T 0.34 TCGA-44-7667-01 7 142651304 142651304 C A KEL Missense_Mutation p.K297N 0.50 deleterious(0.05) benign(0.16) TCGA-44-7667-01 7 143039219 143039219 G T CLCN1 Missense_Mutation p.G594C 0.16 deleterious(0.03) probably_damaging(0.971) TCGA-44-7667-01 7 143701639 143701639 G T OR6B1 Missense_Mutation p.V184L 0.39 tolerated(1) benign(0.137) TCGA-44-7667-01 7 143748122 143748122 C A OR2A5 Missense_Mutation p.P210T 0.48 deleterious(0) probably_damaging(0.982) TCGA-44-7667-01 7 150417416 150417416 G A GIMAP1 Silent p.S108S 0.17 TCGA-44-7667-01 7 15430465 15430465 C T AGMO Missense_Mutation p.G248R 0.24 deleterious(0) probably_damaging(0.997) TCGA-44-7667-01 7 18624995 18624995 C A HDAC9 Missense_Mutation p.D38E 0.07 tolerated(0.3) possibly_damaging(0.689) TCGA-44-7667-01 7 18687590 18687590 A G HDAC9 Silent p.E406E 0.13 TCGA-44-7667-01 7 21521557 21521557 A T SP4 Silent p.P641P 0.14 TCGA-44-7667-01 7 37780670 37780670 G A GPR141 Silent p.L225L 0.43 TCGA-44-7667-01 7 44197682 44197682 G T GCK Intron 0.57 TCGA-44-7667-01 7 44571748 44571748 C A NPC1L1 Silent p.G826G 0.42 TCGA-44-7667-01 7 47944064 47944064 G C PKD1L1 Missense_Mutation p.I614M 0.14 deleterious(0) probably_damaging(0.973) TCGA-44-7667-01 7 50468265 50468265 G - IKZF1 Frame_Shift_Del p.D459Tfs*9 0.23 TCGA-44-7667-01 7 55466259 55466259 G T LANCL2 Missense_Mutation p.A156S 0.11 deleterious(0.03) possibly_damaging(0.7) TCGA-44-7667-01 7 6064133 6064133 A C EIF2AK1 3'UTR 0.62 TCGA-44-7667-01 7 71275333 71275334 - T CALN1 Frame_Shift_Ins p.E216Rfs*3 0.11 TCGA-44-7667-01 7 76247528 76247528 A T POMZP3 Missense_Mutation p.F106Y 0.12 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-44-7667-01 7 82430869 82430869 T C PCLO Missense_Mutation p.Q4991R 0.38 unknown(0) TCGA-44-7667-01 7 86415678 86415678 C A GRM3 Silent p.T190T 0.08 TCGA-44-7667-01 7 98491471 98491471 A G TRRAP Silent p.L139L 0.10 TCGA-44-7667-01 7 98988802 98988802 G A ARPC1B Missense_Mutation p.V237I 0.15 tolerated(0.23) benign(0) TCGA-44-7667-01 8 100990221 100990221 C T RGS22 Missense_Mutation p.S1148N 0.05 tolerated(0.15) probably_damaging(0.925) TCGA-44-7667-01 8 10555351 10555351 T A C8orf74 Missense_Mutation p.W162R 0.49 deleterious(0) probably_damaging(1) TCGA-44-7667-01 8 113349025 113349025 C A CSMD3 Missense_Mutation p.G2292V 0.07 deleterious(0) probably_damaging(0.995) TCGA-44-7667-01 8 113349026 113349026 C A CSMD3 Missense_Mutation p.G2292C 0.07 deleterious(0) probably_damaging(0.997) TCGA-44-7667-01 8 113662527 113662527 C A CSMD3 Missense_Mutation p.G1019V 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-44-7667-01 8 124448762 124448762 T G WDYHV1 Missense_Mutation p.L102V 0.06 deleterious(0) possibly_damaging(0.661) TCGA-44-7667-01 8 131092212 131092212 C A ASAP1 Missense_Mutation p.D860Y 0.06 tolerated(0.11) possibly_damaging(0.886) TCGA-44-7667-01 8 133855062 133855062 A T PHF20L1 Missense_Mutation p.H897L 0.73 tolerated(0.33) benign(0) TCGA-44-7667-01 8 133855063 133855063 C A PHF20L1 Missense_Mutation p.H897Q 0.73 tolerated(0.53) benign(0.001) TCGA-44-7667-01 8 134472055 134472055 C A ST3GAL1 Silent p.T325T 0.75 TCGA-44-7667-01 8 143559546 143559546 G T BAI1 Splice_Site p.X463_splice 0.64 TCGA-44-7667-01 8 17823551 17823551 C A PCM1 Missense_Mutation p.P967T 0.30 tolerated(0.05) benign(0.005) TCGA-44-7667-01 8 1877563 1877563 C T ARHGEF10 Silent p.Y1011Y 0.08 TCGA-44-7667-01 8 37607944 37607944 G A ERLIN2 Missense_Mutation p.A197T 0.07 tolerated(0.62) possibly_damaging(0.571) TCGA-44-7667-01 8 39782849 39782849 G T IDO1 Missense_Mutation p.C272F 0.52 deleterious(0) probably_damaging(0.997) TCGA-44-7667-01 8 41794835 41794835 C A KAT6A Missense_Mutation p.Q1097H 0.58 benign(0.004) TCGA-44-7667-01 8 56717541 56717541 G A TGS1 Missense_Mutation p.A697T 0.83 deleterious(0) probably_damaging(1) TCGA-44-7667-01 8 59409716 59409716 C A CYP7A1 Nonsense_Mutation p.G119* 0.70 TCGA-44-7667-01 8 86035652 86035652 C G LRRCC1 Missense_Mutation p.S312C 0.11 tolerated(0.06) benign(0.043) TCGA-44-7667-01 8 86393097 86393097 T G CA2 3'UTR 0.16 TCGA-44-7667-01 8 87226715 87226715 G T SLC7A13 Missense_Mutation p.A447D 0.51 tolerated(0.64) benign(0.005) TCGA-44-7667-01 8 99015971 99015971 C A MATN2 Missense_Mutation p.H429Q 0.86 tolerated(0.2) benign(0.082) TCGA-44-7667-01 9 100881382 100881382 C A TRIM14 Missense_Mutation p.R30L 0.50 deleterious(0) probably_damaging(0.995) TCGA-44-7667-01 9 110249369 110249369 C A KLF4 Missense_Mutation p.G402C 0.37 deleterious(0) probably_damaging(0.998) TCGA-44-7667-01 9 111798654 111798654 G A TMEM245 Missense_Mutation p.A744V 0.16 deleterious(0) probably_damaging(0.998) TCGA-44-7667-01 9 125289197 125289197 G - OR1N1 Frame_Shift_Del p.H126Tfs*9 0.21 TCGA-44-7667-01 9 125330688 125330688 C T OR1L8 Silent p.E23E 0.18 TCGA-44-7667-01 9 127101941 127101941 C A NEK6 Nonsense_Mutation p.Y272* 0.28 TCGA-44-7667-01 9 134073958 134073958 A C NUP214 Missense_Mutation p.T1693P 0.20 possibly_damaging(0.537) TCGA-44-7667-01 9 134358752 134358752 G A PRRC2B Missense_Mutation p.D1794N 0.10 deleterious(0) probably_damaging(0.999) TCGA-44-7667-01 9 137990334 137990334 C G OLFM1 Missense_Mutation p.A202G 0.16 tolerated(0.13) possibly_damaging(0.739) TCGA-44-7667-01 9 14851557 14851557 G A FREM1 Nonsense_Mutation p.Q293* 0.29 TCGA-44-7667-01 9 26905785 26905785 T C PLAA Silent p.T704T 0.14 TCGA-44-7667-01 9 65506564 65506564 G A SPATA31A7 Silent p.V332V 0.12 TCGA-44-7667-01 9 78682927 78682927 C G PCSK5 Missense_Mutation p.T230R 0.25 deleterious(0.01) probably_damaging(0.994) TCGA-44-7667-01 9 93376017 93376017 T C DIRAS2 Silent p.T31T 0.23 TCGA-44-7667-01 9 99795258 99795258 G A CTSV Silent p.A326A 0.30 TCGA-44-7667-01 X 100537379 100537379 A G TAF7L Silent p.T200T 0.56 TCGA-44-7667-01 X 104512136 104512136 A C IL1RAPL2 Missense_Mutation p.E203D 0.07 tolerated(0.1) benign(0.06) TCGA-44-7667-01 X 135496331 135496331 G T GPR112 Missense_Mutation p.R3017L 0.13 deleterious(0.03) benign(0.147) TCGA-44-7667-01 X 147009854 147009854 A T FMR1 Silent p.A71A 0.32 TCGA-44-7667-01 X 151366210 151366210 C T GABRA3 Missense_Mutation p.G276S 0.26 deleterious(0.01) possibly_damaging(0.831) TCGA-44-7667-01 X 151562911 151562911 C T GABRA3 Intron 0.10 TCGA-44-7667-01 X 154508586 154508586 C T CLIC2 Missense_Mutation p.R145H 0.08 deleterious(0.03) probably_damaging(0.996) TCGA-44-7667-01 X 32717329 32717329 C T DMD Missense_Mutation p.S244N 0.48 benign(0.133) TCGA-44-7667-01 X 37026658 37026658 C T FAM47C Missense_Mutation p.R59C 0.19 deleterious(0.01) probably_damaging(0.95) TCGA-44-7667-01 X 37028267 37028267 C T FAM47C Missense_Mutation p.P595L 0.42 tolerated_low_confidence(0.54) benign(0) TCGA-44-7667-01 X 49093593 49093593 A T CCDC22 Missense_Mutation p.T31S 0.58 tolerated(0.36) benign(0.148) TCGA-44-7667-01 X 7137677 7137677 T A STS 5'UTR 0.14 TCGA-44-7667-01 X 74742846 74742846 C A ZDHHC15 Missense_Mutation p.W5L 0.53 tolerated_low_confidence(0.88) benign(0.002) TCGA-44-7667-01 X 91131884 91131884 C A PCDH11X Nonsense_Mutation p.Y215* 0.29 TCGA-44-7669-01 10 101503044 101503044 G T CUTC Missense_Mutation p.G110C 0.19 deleterious(0) probably_damaging(0.997) TCGA-44-7669-01 10 106976822 106976822 A T SORCS3 Silent p.T892T 0.27 TCGA-44-7669-01 10 108371675 108371675 C T SORCS1 Silent p.L1009L 0.17 TCGA-44-7669-01 10 115405668 115405668 T C NRAP Silent p.K342K 0.22 TCGA-44-7669-01 10 115963186 115963186 G T TDRD1 Missense_Mutation p.V281L 0.17 tolerated(0.06) benign(0.091) TCGA-44-7669-01 10 116887422 116887422 A G ATRNL1 Missense_Mutation p.Y186C 0.27 deleterious(0) probably_damaging(0.954) TCGA-44-7669-01 10 122334658 122334658 T G PPAPDC1A Missense_Mutation p.L154R 0.08 deleterious(0) probably_damaging(0.993) TCGA-44-7669-01 10 124350194 124350194 G T DMBT1 Silent p.R707R 0.13 TCGA-44-7669-01 10 125528194 125528194 C A CPXM2 Missense_Mutation p.V383L 0.10 deleterious(0) possibly_damaging(0.903) TCGA-44-7669-01 10 13230969 13230969 G T MCM10 Missense_Mutation p.G436V 0.28 deleterious(0) probably_damaging(0.979) TCGA-44-7669-01 10 26446316 26446316 G C MYO3A Missense_Mutation p.E957D 0.31 tolerated(1) benign(0.004) TCGA-44-7669-01 10 27537122 27537122 C T RP11-85G18.6 Intron 0.28 TCGA-44-7669-01 10 30318686 30318686 G T KIAA1462 Missense_Mutation p.H131N 0.19 deleterious(0.03) benign(0) TCGA-44-7669-01 10 34671710 34671710 C A PARD3 Missense_Mutation p.S386I 0.16 deleterious(0.04) benign(0.025) TCGA-44-7669-01 10 37431000 37431000 C G ANKRD30A Missense_Mutation p.P336R 0.15 tolerated(0.17) probably_damaging(0.937) TCGA-44-7669-01 10 38343493 38343493 G T ZNF33A Missense_Mutation p.M147I 0.22 tolerated(0.3) benign(0.012) TCGA-44-7669-01 10 38407051 38407051 G T ZNF37A Missense_Mutation p.E324D 0.30 deleterious(0.02) possibly_damaging(0.806) TCGA-44-7669-01 10 43882805 43882805 T C HNRNPF Missense_Mutation p.I176M 0.25 tolerated(0.08) probably_damaging(0.997) TCGA-44-7669-01 10 45799453 45799453 G A OR13A1 Missense_Mutation p.R140W 0.32 deleterious(0.02) possibly_damaging(0.507) TCGA-44-7669-01 10 50819926 50819926 C T SLC18A3 Silent p.F380F 0.16 TCGA-44-7669-01 10 50856618 50856618 C T CHAT Silent p.V449V 0.36 TCGA-44-7669-01 10 54074344 54074344 C A DKK1 Silent p.G50G 0.29 TCGA-44-7669-01 10 55582052 55582052 G A PCDH15 Missense_Mutation p.P1814S 0.08 tolerated_low_confidence(0.81) unknown(0) TCGA-44-7669-01 10 55626470 55626470 A T PCDH15 Missense_Mutation p.Y1217N 0.18 deleterious(0.04) probably_damaging(0.996) TCGA-44-7669-01 10 55782795 55782795 C G PCDH15 Missense_Mutation p.A795P 0.29 deleterious(0) probably_damaging(1) TCGA-44-7669-01 10 61022232 61022232 C G FAM13C Missense_Mutation p.E400Q 0.21 deleterious(0.01) probably_damaging(0.97) TCGA-44-7669-01 10 63662049 63662049 G C ARID5B Silent p.P51P 0.21 TCGA-44-7669-01 10 73544146 73544146 G A CDH23 Missense_Mutation p.R1829H 0.19 deleterious(0.05) probably_damaging(0.923) TCGA-44-7669-01 10 7618902 7618902 C A ITIH5 Missense_Mutation p.A498S 0.32 tolerated(0.12) benign(0.287) TCGA-44-7669-01 10 94834545 94834545 C A CYP26A1 Silent p.R142R 0.27 TCGA-44-7669-01 10 95719896 95719896 C T PIPSL RNA 0.16 TCGA-44-7669-01 11 101374870 101374870 T C TRPC6 Missense_Mutation p.Y277C 0.11 deleterious(0) probably_damaging(0.999) TCGA-44-7669-01 11 102593161 102593161 T A MMP8 Missense_Mutation p.R116W 0.26 deleterious(0) probably_damaging(0.993) TCGA-44-7669-01 11 104774251 104774251 C A RP11-693N9.2 RNA 0.12 TCGA-44-7669-01 11 105009794 105009794 G A CARD18 Missense_Mutation p.R7C 0.22 deleterious(0) possibly_damaging(0.846) TCGA-44-7669-01 11 105732770 105732770 A G GRIA4 Missense_Mutation p.I170V 0.22 tolerated(0.63) benign(0.02) TCGA-44-7669-01 11 1077668 1077668 C G MUC2 Missense_Mutation p.R140G 0.28 probably_damaging(0.994) TCGA-44-7669-01 11 108043050 108043050 T A NPAT Silent p.V887V 0.28 TCGA-44-7669-01 11 108057231 108057231 G A NPAT Missense_Mutation p.P235L 0.38 tolerated(0.07) benign(0.014) TCGA-44-7669-01 11 1099771 1099771 G T MUC2 Silent p.V2456V 0.38 TCGA-44-7669-01 11 113234603 113234603 G T TTC12 Silent p.T590T 0.45 TCGA-44-7669-01 11 119031863 119031863 G A ABCG4 3'UTR 0.20 TCGA-44-7669-01 11 119185910 119185910 G T MCAM Missense_Mutation p.A44D 0.22 deleterious(0) probably_damaging(0.989) TCGA-44-7669-01 11 120984388 120984388 G T TECTA Nonsense_Mutation p.G251* 0.30 TCGA-44-7669-01 11 121489536 121489536 G T SORL1 Missense_Mutation p.K1886N 0.44 tolerated(0.06) benign(0.002) TCGA-44-7669-01 11 123811050 123811050 C A OR4D5 Missense_Mutation p.H243N 0.16 deleterious(0) probably_damaging(0.992) TCGA-44-7669-01 11 123813921 123813921 C T OR6T1 Missense_Mutation p.G209S 0.19 tolerated(0.38) benign(0.016) TCGA-44-7669-01 11 124413323 124413323 G T OR8B12 Silent p.I76I 0.33 TCGA-44-7669-01 11 124440003 124440003 C G OR8A1 Silent p.P13P 0.33 TCGA-44-7669-01 11 17452338 17452338 C A ABCC8 Intron 0.24 TCGA-44-7669-01 11 27390103 27390103 C A LGR4 Missense_Mutation p.V723F 0.43 tolerated(0.07) benign(0.099) TCGA-44-7669-01 11 3111787 3111787 C A OSBPL5 Splice_Site p.X800_splice 0.54 TCGA-44-7669-01 11 4661210 4661210 G A OR51D1 Missense_Mutation p.V64M 0.20 tolerated(0.05) benign(0.002) TCGA-44-7669-01 11 48346862 48346862 G A OR4C3 Missense_Mutation p.A124T 0.14 tolerated(1) benign(0.014) TCGA-44-7669-01 11 51515674 51515674 G T OR4C46 Missense_Mutation p.M131I 0.34 tolerated_low_confidence(0.19) benign(0.001) TCGA-44-7669-01 11 55065337 55065337 G T TRIM51HP RNA 0.20 TCGA-44-7669-01 11 55110891 55110891 C A OR4A16 Missense_Mutation p.S72Y 0.29 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-44-7669-01 11 55111539 55111539 G C OR4A16 Missense_Mutation p.R288T 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-7669-01 11 5530472 5530472 G C UBQLN3 Missense_Mutation p.S106C 0.28 deleterious(0) possibly_damaging(0.789) TCGA-44-7669-01 11 57947239 57947239 G C OR9Q1 Missense_Mutation p.G108A 0.21 tolerated(1) benign(0.047) TCGA-44-7669-01 11 60567394 60567394 C A MS4A10 3'UTR 0.33 TCGA-44-7669-01 11 60617823 60617823 A C CCDC86 3'UTR 0.33 TCGA-44-7669-01 11 6263054 6263054 T A CNGA4 Intron 0.52 TCGA-44-7669-01 11 63594606 63594606 G T C11orf84 Missense_Mutation p.V381L 0.47 tolerated_low_confidence(0.27) benign(0.007) TCGA-44-7669-01 11 64536718 64536718 C - SF1 Frame_Shift_Del p.T378Pfs*10 0.32 TCGA-44-7669-01 11 6477605 6477605 G T TRIM3 Missense_Mutation p.R451S 0.28 deleterious(0) probably_damaging(0.998) TCGA-44-7669-01 11 65770766 65770766 G T BANF1 Missense_Mutation p.M15I 0.30 tolerated(0.08) benign(0.177) TCGA-44-7669-01 11 67020928 67020928 G A KDM2A Silent p.L979L 0.33 TCGA-44-7669-01 11 68747859 68747859 C G MRGPRD Silent p.L199L 0.37 TCGA-44-7669-01 11 89028371 89028371 C G TYR Nonsense_Mutation p.S476* 0.32 TCGA-44-7669-01 11 94113874 94113874 T A GPR83 Missense_Mutation p.Y238F 0.18 tolerated(0.06) probably_damaging(0.996) TCGA-44-7669-01 11 99872827 99872827 T G CNTN5 Silent p.A313A 0.36 TCGA-44-7669-01 11 99932018 99932018 C G CNTN5 Missense_Mutation p.A352G 0.07 tolerated(1) benign(0.36) TCGA-44-7669-01 12 100492147 100492147 C A UHRF1BP1L Missense_Mutation p.D171Y 0.33 deleterious(0) probably_damaging(0.927) TCGA-44-7669-01 12 109306360 109306360 C T SVOP Missense_Mutation p.G468E 0.41 deleterious_low_confidence(0.01) benign(0.124) TCGA-44-7669-01 12 109893983 109893983 C G KCTD10 Silent p.R221R 0.11 TCGA-44-7669-01 12 113824843 113824843 G A PLBD2 Missense_Mutation p.R463Q 0.12 tolerated(0.17) benign(0.06) TCGA-44-7669-01 12 11506889 11506889 G T PRB1 Missense_Mutation p.P50T 0.62 tolerated_low_confidence(0.19) unknown(0) TCGA-44-7669-01 12 120166315 120166315 G A CIT Silent p.L1195L 0.32 TCGA-44-7669-01 12 12022774 12022774 G T ETV6 Nonsense_Mutation p.E294* 0.50 TCGA-44-7669-01 12 121622337 121622337 T G P2RX7 Missense_Mutation p.I507S 0.14 deleterious(0) probably_damaging(0.93) TCGA-44-7669-01 12 121890960 121890960 C A KDM2B Missense_Mutation p.R641L 0.33 deleterious(0) probably_damaging(0.998) TCGA-44-7669-01 12 130831129 130831129 G T PIWIL1 Missense_Mutation p.K177N 0.42 deleterious(0.01) probably_damaging(0.937) TCGA-44-7669-01 12 132199366 132199366 G T SFSWAP Splice_Site p.X130_splice 0.38 TCGA-44-7669-01 12 133732504 133732504 C T ZNF10 Silent p.H224H 0.16 TCGA-44-7669-01 12 22354432 22354432 C T ST8SIA1 3'UTR 0.40 TCGA-44-7669-01 12 29725152 29725152 C G TMTC1 Splice_Site p.X473_splice 0.19 TCGA-44-7669-01 12 3018726 3018726 C T TULP3 Nonsense_Mutation p.Q25* 0.18 TCGA-44-7669-01 12 32949131 32949131 T C PKP2 Missense_Mutation p.N801D 0.28 deleterious(0) probably_damaging(0.999) TCGA-44-7669-01 12 33559860 33559860 A T SYT10 Missense_Mutation p.L314Q 0.37 deleterious(0) probably_damaging(1) TCGA-44-7669-01 12 48596967 48596967 G T OR10AD1 Missense_Mutation p.L37I 0.08 tolerated(0.17) probably_damaging(0.996) TCGA-44-7669-01 12 48962359 48962359 G A LALBA Silent p.D103D 0.14 TCGA-44-7669-01 12 49255801 49255801 T A RND1 Silent p.A103A 0.39 TCGA-44-7669-01 12 52284470 52284470 T A ANKRD33 Missense_Mutation p.L247Q 0.30 tolerated(0.1) benign(0.032) TCGA-44-7669-01 12 52887042 52887042 A T KRT6A 5'Flank 0.33 TCGA-44-7669-01 12 57970143 57970143 C - KIF5A Frame_Shift_Del p.I728Lfs*7 0.29 TCGA-44-7669-01 12 6953051 6953051 C T GNB3 Missense_Mutation p.A203V 0.13 deleterious(0) possibly_damaging(0.762) TCGA-44-7669-01 12 72004858 72004858 C A ZFC3H1 Missense_Mutation p.V1917F 0.26 tolerated(0.43) benign(0.001) TCGA-44-7669-01 12 75706659 75706659 C G CAPS2 Missense_Mutation p.A229P 0.34 deleterious(0.05) possibly_damaging(0.616) TCGA-44-7669-01 12 75875806 75875806 G C GLIPR1 Missense_Mutation p.D123H 0.45 tolerated(0.52) benign(0.013) TCGA-44-7669-01 12 78452838 78452838 C T NAV3 Missense_Mutation p.A860V 0.31 deleterious(0.03) benign(0.004) TCGA-44-7669-01 12 8074210 8074210 G C SLC2A3 Nonsense_Mutation p.Y430* 0.26 TCGA-44-7669-01 13 109475613 109475613 C A MYO16 Missense_Mutation p.L340M 0.55 tolerated(0.14) possibly_damaging(0.643) TCGA-44-7669-01 13 111928034 111928034 G T ARHGEF7 Intron 0.56 TCGA-44-7669-01 13 114150319 114150319 C T TMCO3 Silent p.A141A 0.40 TCGA-44-7669-01 13 32339229 32339229 A C RXFP2 Silent p.V125V 0.21 TCGA-44-7669-01 13 33110700 33110700 T C N4BP2L2 Intron 0.45 TCGA-44-7669-01 13 48947629 48947629 G T RB1 Splice_Site p.X405_splice 0.34 TCGA-44-7669-01 14 101526156 101526156 G T MIR154 RNA 0.49 TCGA-44-7669-01 14 102675783 102675783 C T WDR20 Missense_Mutation p.P457S 0.50 tolerated(0.22) benign(0.001) TCGA-44-7669-01 14 24884783 24884783 G T NYNRIN Missense_Mutation p.Q1276H 0.55 tolerated_low_confidence(0.06) benign(0.014) TCGA-44-7669-01 14 30133047 30133047 T C PRKD1 Missense_Mutation p.H185R 0.46 deleterious(0) probably_damaging(0.997) TCGA-44-7669-01 14 44974065 44974065 G T FSCB Missense_Mutation p.A709E 0.45 tolerated(0.25) unknown(0) TCGA-44-7669-01 14 56101365 56101365 A T KTN1 Missense_Mutation p.T484S 0.61 tolerated(0.91) benign(0.006) TCGA-44-7669-01 14 94046493 94046493 A T UNC79 Splice_Site p.X635_splice 0.45 TCGA-44-7669-01 14 94046494 94046494 G A UNC79 Splice_Site p.X635_splice 0.45 TCGA-44-7669-01 15 102191914 102191914 C A TM2D3 Missense_Mutation p.V52F 0.18 tolerated(0.47) benign(0.042) TCGA-44-7669-01 15 25223707 25223709 ATG TT SNRPN 3'UTR 0.24 TCGA-44-7669-01 15 28360587 28360587 C T HERC2 Silent p.A4570A 0.15 TCGA-44-7669-01 15 29346913 29346913 A G APBA2 Missense_Mutation p.R276G 0.24 deleterious_low_confidence(0) benign(0.004) TCGA-44-7669-01 15 31355344 31355344 C T TRPM1 Silent p.A331A 0.26 TCGA-44-7669-01 15 31355345 31355345 G T TRPM1 Missense_Mutation p.A331E 0.24 deleterious(0.01) probably_damaging(0.988) TCGA-44-7669-01 15 42839596 42839596 G C LRRC57 Missense_Mutation p.Q119E 0.43 tolerated(0.11) benign(0.002) TCGA-44-7669-01 15 43627251 43627251 C T ADAL 5'UTR 0.40 TCGA-44-7669-01 15 44085915 44085915 G T SERF2 Silent p.R86R 0.31 TCGA-44-7669-01 15 44859700 44859700 T A SPG11 Missense_Mutation p.S2226C 0.40 deleterious(0) probably_damaging(0.938) TCGA-44-7669-01 15 54305211 54305211 G T UNC13C Missense_Mutation p.Q37H 0.18 deleterious_low_confidence(0.01) benign(0.245) TCGA-44-7669-01 15 58476198 58476199 - T AQP9 Frame_Shift_Ins p.L252Ffs*16 0.18 TCGA-44-7669-01 15 65157744 65157744 C T PLEKHO2 Missense_Mutation p.P377L 0.30 tolerated(0.63) benign(0) TCGA-44-7669-01 15 76763649 76763649 G A SCAPER Silent p.Y994Y 0.24 TCGA-44-7669-01 15 77406722 77406722 C G PEAK1 Missense_Mutation p.D1673H 0.37 deleterious(0) possibly_damaging(0.886) TCGA-44-7669-01 15 83933226 83933226 T C BNC1 Silent p.S259S 0.18 TCGA-44-7669-01 15 89401853 89401853 A T ACAN Missense_Mutation p.N2013Y 0.13 deleterious(0) possibly_damaging(0.76) TCGA-44-7669-01 15 90020392 90020392 G C RHCG Silent p.T386T 0.37 TCGA-44-7669-01 15 91185374 91185374 C T CRTC3 3'UTR 0.48 TCGA-44-7669-01 15 97326909 97326909 G T SPATA8 Silent p.G8G 0.40 TCGA-44-7669-01 16 1279674 1279674 C A TPSB2 Missense_Mutation p.W42C 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-44-7669-01 16 1370587 1370587 G T UBE2I Intron 0.32 TCGA-44-7669-01 16 1370588 1370588 G T UBE2I Intron 0.37 TCGA-44-7669-01 16 17202534 17202534 C A XYLT1 3'UTR 0.33 TCGA-44-7669-01 16 20554325 20554325 C T ACSM2B Missense_Mutation p.G474R 0.07 deleterious(0) probably_damaging(0.994) TCGA-44-7669-01 16 21181851 21181851 G C TMEM159 Missense_Mutation p.V64L 0.37 tolerated(0.16) benign(0.05) TCGA-44-7669-01 16 27375238 27375238 G T IL4R 3'UTR 0.24 TCGA-44-7669-01 16 30991502 30991502 G T SETD1A Missense_Mutation p.W1465C 0.48 unknown(0) TCGA-44-7669-01 16 3614103 3614103 G C NLRC3 Missense_Mutation p.L326V 0.42 deleterious(0.01) probably_damaging(0.983) TCGA-44-7669-01 16 48232097 48232097 C T ABCC11 Silent p.G724G 0.49 TCGA-44-7669-01 16 48292536 48292536 A G LONP2 Missense_Mutation p.D203G 0.46 deleterious(0) probably_damaging(0.968) TCGA-44-7669-01 16 601625 601625 G A CAPN15 Missense_Mutation p.S769N 0.43 deleterious(0.03) benign(0.042) TCGA-44-7669-01 16 8868885 8868885 T C ABAT Missense_Mutation p.F365L 0.05 deleterious(0.01) possibly_damaging(0.908) TCGA-44-7669-01 17 11515094 11515094 G - DNAH9 Frame_Shift_Del p.A301Qfs*3 0.35 TCGA-44-7669-01 17 11540016 11540016 C A DNAH9 Nonsense_Mutation p.Y567* 0.58 TCGA-44-7669-01 17 33806361 33806361 G T SLFN12L Missense_Mutation p.P290T 0.64 deleterious(0) probably_damaging(0.986) TCGA-44-7669-01 17 40255747 40255747 G T DHX58 Missense_Mutation p.Q545K 0.21 tolerated(0.36) benign(0.002) TCGA-44-7669-01 17 41063082 41063082 T C G6PC Missense_Mutation p.L238P 0.67 deleterious(0) possibly_damaging(0.759) TCGA-44-7669-01 17 45774121 45774121 G C TBKBP1 Silent p.L90L 0.55 TCGA-44-7669-01 17 46621003 46621003 C G HOXB2 Missense_Mutation p.K166N 0.25 deleterious(0) probably_damaging(1) TCGA-44-7669-01 17 46673647 46673647 C A HOXB6 3'UTR 0.60 TCGA-44-7669-01 17 55917083 55917083 T C MRPS23 3'UTR 0.56 TCGA-44-7669-01 17 67133539 67133539 C T ABCA6 Missense_Mutation p.V67I 0.61 tolerated(0.19) benign(0.095) TCGA-44-7669-01 17 67170797 67170797 T A ABCA10 Missense_Mutation p.Y1000F 0.53 tolerated(0.41) benign(0.03) TCGA-44-7669-01 17 72610148 72610148 G A CD300E Missense_Mutation p.T138I 0.59 deleterious(0.02) benign(0.052) TCGA-44-7669-01 17 73571140 73571140 C T LLGL2 3'UTR 0.42 TCGA-44-7669-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.46 TCGA-44-7669-01 18 19996076 19996076 G A CTAGE1 Missense_Mutation p.P567S 0.76 deleterious(0.04) probably_damaging(0.945) TCGA-44-7669-01 18 23866407 23866407 G A TAF4B Missense_Mutation p.G512S 0.11 tolerated(0.47) benign(0.009) TCGA-44-7669-01 18 25570298 25570298 G T CDH2 Missense_Mutation p.T454K 0.56 tolerated(0.29) benign(0.005) TCGA-44-7669-01 18 29039000 29039000 C A DSG3 Missense_Mutation p.T126K 0.49 tolerated(1) probably_damaging(0.978) TCGA-44-7669-01 18 31324356 31324356 C G ASXL3 Missense_Mutation p.A1515G 0.07 benign(0.212) TCGA-44-7669-01 18 44560848 44560848 G T TCEB3B Missense_Mutation p.P263Q 0.31 tolerated(0.35) benign(0.116) TCGA-44-7669-01 18 45566354 45566354 C A ZBTB7C Silent p.G375G 0.45 TCGA-44-7669-01 18 48575090 48575090 A G SMAD4 Missense_Mutation p.Y95C 0.61 deleterious(0) probably_damaging(1) TCGA-44-7669-01 18 56892962 56892962 C A GRP Silent p.G126G 0.57 TCGA-44-7669-01 18 74091115 74091115 T A ZNF516 Silent p.P985P 0.28 TCGA-44-7669-01 18 74091117 74091117 G A ZNF516 Missense_Mutation p.P985S 0.22 tolerated(0.17) benign(0.002) TCGA-44-7669-01 19 10602767 10602767 C A KEAP1 Missense_Mutation p.V271L 0.49 deleterious(0) probably_damaging(0.927) TCGA-44-7669-01 19 1207162 1207162 A T STK11 Nonsense_Mutation p.K84* 0.80 TCGA-44-7669-01 19 12089450 12089450 T A ZNF763 Missense_Mutation p.F240L 0.46 tolerated(0.1) possibly_damaging(0.547) TCGA-44-7669-01 19 12813732 12813732 C A TNPO2 Missense_Mutation p.G737V 0.51 deleterious(0) probably_damaging(0.967) TCGA-44-7669-01 19 13041496 13041496 C G FARSA Missense_Mutation p.R72P 0.12 tolerated(0.11) benign(0.036) TCGA-44-7669-01 19 1430307 1430307 G A DAZAP1 Missense_Mutation p.G273S 0.69 deleterious(0.05) unknown(0) TCGA-44-7669-01 19 1827786 1827786 C A REXO1 Silent p.L334L 0.60 TCGA-44-7669-01 19 1827787 1827787 A G REXO1 Missense_Mutation p.L334P 0.60 tolerated(0.19) benign(0.009) TCGA-44-7669-01 19 18731233 18731233 C A TMEM59L Missense_Mutation p.Q306K 0.15 tolerated(0.06) possibly_damaging(0.792) TCGA-44-7669-01 19 20807917 20807917 G T ZNF626 Missense_Mutation p.P256T 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-44-7669-01 19 22363758 22363758 T G ZNF676 Missense_Mutation p.K254T 0.07 tolerated(0.1) probably_damaging(0.996) TCGA-44-7669-01 19 22836166 22836166 C A ZNF492 5'UTR 0.12 TCGA-44-7669-01 19 33870449 33870449 G T CEBPG Nonsense_Mutation p.E102* 0.40 TCGA-44-7669-01 19 36394674 36394674 G A HCST Missense_Mutation p.G37D 0.21 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-44-7669-01 19 37367788 37367788 A T ZNF345 Missense_Mutation p.E19V 0.34 deleterious(0.01) benign(0.003) TCGA-44-7669-01 19 37643137 37643137 C G ZNF585A Missense_Mutation p.C500S 0.35 deleterious(0) probably_damaging(0.998) TCGA-44-7669-01 19 37904008 37904008 C A ZNF569 Nonsense_Mutation p.G518* 0.36 TCGA-44-7669-01 19 39292721 39292721 C T LGALS4 Missense_Mutation p.V246M 0.33 deleterious(0) probably_damaging(0.995) TCGA-44-7669-01 19 41307019 41307019 A G EGLN2 Missense_Mutation p.Y181C 0.32 deleterious(0.03) possibly_damaging(0.634) TCGA-44-7669-01 19 44778629 44778629 T A ZNF233 Missense_Mutation p.Y606N 0.32 tolerated(1) possibly_damaging(0.529) TCGA-44-7669-01 19 45561077 45561077 G A CLASRP Silent p.A178A 0.36 TCGA-44-7669-01 19 46332379 46332379 C T SYMPK Missense_Mutation p.V612M 0.42 tolerated(0.23) benign(0.008) TCGA-44-7669-01 19 47912374 47912374 C G MEIS3 Missense_Mutation p.W280C 0.23 deleterious(0) probably_damaging(1) TCGA-44-7669-01 19 48339650 48339650 A T CRX Missense_Mutation p.Q84L 0.35 deleterious(0) possibly_damaging(0.878) TCGA-44-7669-01 19 48801538 48801538 C A CCDC114 Missense_Mutation p.G397W 0.14 deleterious(0) probably_damaging(1) TCGA-44-7669-01 19 49671869 49671869 C T TRPM4 Silent p.P224P 0.26 TCGA-44-7669-01 19 49854623 49854623 C T TEAD2 Splice_Site p.X180_splice 0.20 TCGA-44-7669-01 19 51466763 51466763 C A KLK6 Missense_Mutation p.R80S 0.12 tolerated(0.74) benign(0.005) TCGA-44-7669-01 19 51466764 51466764 C A KLK6 Missense_Mutation p.R80M 0.12 tolerated(0.11) possibly_damaging(0.453) TCGA-44-7669-01 19 51656387 51656387 G A SIGLEC7 Missense_Mutation p.G430E 0.32 tolerated(0.79) benign(0.197) TCGA-44-7669-01 19 53886147 53886147 A T ZNF525 3'UTR 0.23 TCGA-44-7669-01 19 53959230 53959230 G T ZNF761 RNA 0.28 TCGA-44-7669-01 19 54245850 54245850 G C MIR520H RNA 0.20 TCGA-44-7669-01 19 54659539 54659539 G A LENG1 Missense_Mutation p.R239W 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-44-7669-01 19 55087389 55087389 C A LILRA2 Silent p.T356T 0.29 TCGA-44-7669-01 19 55693000 55693000 C G PTPRH 3'UTR 0.29 TCGA-44-7669-01 19 56243628 56243628 T A NLRP9 Silent p.I523I 0.25 TCGA-44-7669-01 19 56972069 56972069 A G ZNF667 Missense_Mutation p.L50P 0.27 deleterious(0) probably_damaging(0.998) TCGA-44-7669-01 19 57328491 57328491 G T PEG3 Missense_Mutation p.T440N 0.27 deleterious(0.05) benign(0.156) TCGA-44-7669-01 19 57723702 57723702 T A ZNF264 Missense_Mutation p.Y413N 0.20 deleterious(0.05) possibly_damaging(0.612) TCGA-44-7669-01 19 58018104 58018104 C T ZNF773 Missense_Mutation p.T214I 0.45 deleterious(0.01) possibly_damaging(0.526) TCGA-44-7669-01 19 58187610 58187610 G C ZSCAN4 Missense_Mutation p.V33L 0.30 tolerated(0.5) benign(0.004) TCGA-44-7669-01 19 7794707 7794707 C T CLEC4G Missense_Mutation p.S248N 0.54 deleterious(0) probably_damaging(0.998) TCGA-44-7669-01 19 9047471 9047471 G T MUC16 Missense_Mutation p.A11387D 0.38 benign(0.145) TCGA-44-7669-01 1 1278086 1278086 C A DVL1 Missense_Mutation p.G75C 0.46 deleterious(0) probably_damaging(0.995) TCGA-44-7669-01 1 144874726 144874726 C T PDE4DIP Missense_Mutation p.E1628K 0.12 deleterious(0) probably_damaging(0.999) TCGA-44-7669-01 1 144892528 144892528 C T PDE4DIP Silent p.E959E 0.14 TCGA-44-7669-01 1 147380710 147380710 T - GJA8 Frame_Shift_Del p.L210Cfs*12 0.20 TCGA-44-7669-01 1 151010080 151010080 G T BNIPL Missense_Mutation p.A27S 0.21 tolerated(0.59) benign(0.003) TCGA-44-7669-01 1 151378855 151378855 T C POGZ Missense_Mutation p.T886A 0.27 tolerated(0.63) possibly_damaging(0.764) TCGA-44-7669-01 1 152586355 152586355 A G LCE3B Silent p.P23P 0.47 TCGA-44-7669-01 1 157660142 157660142 G T FCRL3 Missense_Mutation p.N531K 0.19 deleterious(0.04) possibly_damaging(0.811) TCGA-44-7669-01 1 158298716 158298716 C A CD1B Missense_Mutation p.R325S 0.16 deleterious(0.01) possibly_damaging(0.642) TCGA-44-7669-01 1 158581118 158581118 C G SPTA1 Missense_Mutation p.R2399P 0.49 deleterious(0.02) possibly_damaging(0.822) TCGA-44-7669-01 1 158590105 158590105 G A SPTA1 Missense_Mutation p.S2091F 0.43 deleterious(0) probably_damaging(0.984) TCGA-44-7669-01 1 158735719 158735719 A G OR6N1 Missense_Mutation p.Y252H 0.36 deleterious(0) possibly_damaging(0.853) TCGA-44-7669-01 1 160283840 160283840 T A COPA Missense_Mutation p.Q261L 0.51 deleterious(0) benign(0.011) TCGA-44-7669-01 1 161642892 161642892 A C FCGR2B Missense_Mutation p.K173N 0.11 deleterious(0.02) benign(0.159) TCGA-44-7669-01 1 162750107 162750107 A T DDR2 3'UTR 0.45 TCGA-44-7669-01 1 163131739 163131739 C A RGS5 Missense_Mutation p.W61C 0.08 deleterious(0) possibly_damaging(0.786) TCGA-44-7669-01 1 163131740 163131740 C A RGS5 Missense_Mutation p.W61L 0.08 deleterious(0) possibly_damaging(0.498) TCGA-44-7669-01 1 168148409 168148409 G T TIPRL Missense_Mutation p.D32Y 0.44 tolerated(0.09) benign(0.309) TCGA-44-7669-01 1 175360538 175360538 C A TNR Missense_Mutation p.D465Y 0.21 tolerated(1) probably_damaging(0.947) TCGA-44-7669-01 1 177133768 177133768 C A ASTN1 Silent p.G15G 0.43 TCGA-44-7669-01 1 181690944 181690944 C G CACNA1E Silent p.S669S 0.17 TCGA-44-7669-01 1 182026493 182026493 C A ZNF648 Missense_Mutation p.S218I 0.48 deleterious(0.04) benign(0.105) TCGA-44-7669-01 1 196887415 196887415 A G CFHR4 Missense_Mutation p.Y538C 0.26 deleterious(0) probably_damaging(0.996) TCGA-44-7669-01 1 197112909 197112909 T C ASPM Missense_Mutation p.K158R 0.09 deleterious(0.04) benign(0.017) TCGA-44-7669-01 1 197404183 197404183 A G CRB1 Missense_Mutation p.S1064G 0.23 deleterious(0) probably_damaging(0.999) TCGA-44-7669-01 1 19992542 19992542 G T HTR6 Missense_Mutation p.C99F 0.30 deleterious(0) probably_damaging(1) TCGA-44-7669-01 1 204971852 204971852 G A NFASC Missense_Mutation p.V1089I 0.06 tolerated(0.5) unknown(0) TCGA-44-7669-01 1 208201379 208201383 GAGTA - PLXNA2 Frame_Shift_Del p.Y1854Lfs*6 0.39 TCGA-44-7669-01 1 216498862 216498862 G A USH2A Missense_Mutation p.R310W 0.18 probably_damaging(1) TCGA-44-7669-01 1 21926000 21926000 T C RAP1GAP Missense_Mutation p.E652G 0.14 tolerated(0.65) benign(0.046) TCGA-44-7669-01 1 220870193 220870193 T A C1orf115 3'UTR 0.19 TCGA-44-7669-01 1 222717137 222717137 C A HHIPL2 Missense_Mutation p.G239V 0.47 deleterious(0) probably_damaging(1) TCGA-44-7669-01 1 227333230 227333230 G A CDC42BPA Missense_Mutation p.T368I 0.15 deleterious(0) probably_damaging(1) TCGA-44-7669-01 1 228033808 228033808 A G PRSS38 Missense_Mutation p.I294V 0.19 tolerated(0.51) benign(0.002) TCGA-44-7669-01 1 228612708 228612708 C T HIST3H3 Missense_Mutation p.D107N 0.16 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-44-7669-01 1 229795160 229795160 A C URB2 3'UTR 0.50 TCGA-44-7669-01 1 237780595 237780595 C A RYR2 Missense_Mutation p.L1909M 0.12 possibly_damaging(0.883) TCGA-44-7669-01 1 237942060 237942060 A T RYR2 Missense_Mutation p.K3957M 0.33 probably_damaging(0.992) TCGA-44-7669-01 1 247013698 247013698 C T AHCTF1 Silent p.R1879R 0.47 TCGA-44-7669-01 1 247769170 247769170 G A OR2G3 Missense_Mutation p.G95S 0.14 tolerated(0.12) benign(0.033) TCGA-44-7669-01 1 247921484 247921484 C A OR1C1 Silent p.S75S 0.23 TCGA-44-7669-01 1 248113083 248113083 C T OR2L8 Silent p.C308C 0.08 TCGA-44-7669-01 1 248263688 248263688 C A OR2L13 3'UTR 0.14 TCGA-44-7669-01 1 248309335 248309335 G A OR2M5 Missense_Mutation p.E296K 0.49 deleterious(0.01) benign(0.089) TCGA-44-7669-01 1 248367063 248367063 G T OR2M3 Nonsense_Mutation p.E232* 0.04 TCGA-44-7669-01 1 248570230 248570230 C A OR2T1 Missense_Mutation p.P312Q 0.46 deleterious(0) probably_damaging(1) TCGA-44-7669-01 1 2523057 2523057 A T MMEL1 Missense_Mutation p.Y727N 0.24 deleterious(0.02) probably_damaging(0.99) TCGA-44-7669-01 1 25785233 25785233 G A TMEM57 Missense_Mutation p.S335N 0.12 tolerated(0.39) benign(0.001) TCGA-44-7669-01 1 35365814 35365814 G A DLGAP3 Missense_Mutation p.R390C 0.31 deleterious(0.01) possibly_damaging(0.764) TCGA-44-7669-01 1 36026118 36026118 C A NCDN Silent p.A122A 0.16 TCGA-44-7669-01 1 45269868 45269868 T A PLK3 Missense_Mutation p.V431E 0.32 deleterious(0.04) benign(0.201) TCGA-44-7669-01 1 46977961 46977961 T A DMBX1 Missense_Mutation p.L310Q 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-7669-01 1 51005287 51005287 T C FAF1 Missense_Mutation p.N461S 0.19 tolerated(0.45) benign(0.416) TCGA-44-7669-01 1 57372451 57372451 G T C8A Missense_Mutation p.G403V 0.16 deleterious(0.03) possibly_damaging(0.715) TCGA-44-7669-01 1 67205172 67205172 T C SGIP1 Missense_Mutation p.I729T 0.26 deleterious(0) benign(0.071) TCGA-44-7669-01 1 70587496 70587496 G T LRRC7 Nonsense_Mutation p.E1514* 0.36 TCGA-44-7669-01 1 86377098 86377098 C A COL24A1 Nonsense_Mutation p.G861* 0.36 TCGA-44-7669-01 20 21195337 21195337 A G RP4-777D9.2 Intron 0.28 TCGA-44-7669-01 20 2320589 2320589 G T TGM3 Silent p.L630L 0.38 TCGA-44-7669-01 20 23420981 23420981 A G CSTL1 Missense_Mutation p.Q26R 0.27 tolerated(0.07) benign(0.346) TCGA-44-7669-01 20 30309575 30309575 T C BCL2L1 Silent p.A149A 0.28 TCGA-44-7669-01 20 31601647 31601647 G T BPIFB2 Missense_Mutation p.V114L 0.32 tolerated(0.19) benign(0.351) TCGA-44-7669-01 20 37353530 37353530 C A SLC32A1 Missense_Mutation p.R55S 0.33 tolerated(0.15) benign(0.044) TCGA-44-7669-01 20 39832375 39832376 - G ZHX3 Frame_Shift_Ins p.L395Tfs*66 0.29 TCGA-44-7669-01 20 40080634 40080634 C T CHD6 Missense_Mutation p.G1119S 0.33 tolerated(0.06) possibly_damaging(0.727) TCGA-44-7669-01 20 40790168 40790168 C A PTPRT Missense_Mutation p.G836W 0.29 deleterious(0.03) possibly_damaging(0.823) TCGA-44-7669-01 20 44750496 44750496 A T CD40 Missense_Mutation p.Q30L 0.31 deleterious(0) probably_damaging(0.999) TCGA-44-7669-01 20 44856266 44856266 C T CDH22 Missense_Mutation p.G184D 0.36 deleterious(0) probably_damaging(0.999) TCGA-44-7669-01 20 472913 472913 T C CSNK2A1 Silent p.L202L 0.34 TCGA-44-7669-01 20 47630365 47630365 C T ARFGEF2 Intron 0.26 TCGA-44-7669-01 20 50139753 50139753 G A NFATC2 Missense_Mutation p.R343C 0.37 tolerated(0.07) benign(0.005) TCGA-44-7669-01 20 9459603 9459603 C A PLCB4 Silent p.R1178R 0.19 TCGA-44-7669-01 21 32253728 32253728 C A KRTAP11-1 Missense_Mutation p.G39V 0.38 deleterious(0) possibly_damaging(0.883) TCGA-44-7669-01 21 42775222 42775223 GG T MX2 Frame_Shift_Del p.A535Pfs*22 0.28 TCGA-44-7669-01 21 45784046 45784046 G T TRPM2 Missense_Mutation p.A102S 0.08 deleterious(0.02) probably_damaging(0.945) TCGA-44-7669-01 22 20819798 20819798 G A KLHL22 Silent p.L153L 0.36 TCGA-44-7669-01 22 20819800 20819800 G C KLHL22 Missense_Mutation p.L153V 0.37 tolerated(0.4) possibly_damaging(0.642) TCGA-44-7669-01 22 21119496 21119496 C A PI4KA Silent p.G822G 0.29 TCGA-44-7669-01 22 23401822 23401822 G T RTDR1 Missense_Mutation p.R289S 0.23 deleterious(0.01) probably_damaging(0.932) TCGA-44-7669-01 22 24447324 24447324 G T CABIN1 Nonsense_Mutation p.E232* 0.29 TCGA-44-7669-01 22 26830398 26830398 G T ASPHD2 Missense_Mutation p.V273L 0.47 tolerated(0.13) probably_damaging(0.996) TCGA-44-7669-01 22 28193502 28193502 C G MN1 Missense_Mutation p.W1010C 0.42 probably_damaging(0.993) TCGA-44-7669-01 22 30860810 30860810 C A SEC14L3 Nonsense_Mutation p.G221* 0.34 TCGA-44-7669-01 22 30860811 30860811 C A SEC14L3 Missense_Mutation p.L220F 0.34 deleterious(0.03) probably_damaging(0.961) TCGA-44-7669-01 22 41751562 41751562 G T ZC3H7B Missense_Mutation p.E708D 0.45 deleterious(0) possibly_damaging(0.894) TCGA-44-7669-01 22 45689186 45689186 C A UPK3A Silent p.L232L 0.13 TCGA-44-7669-01 2 103119905 103119905 A G SLC9A4 Splice_Site p.X241_splice 0.16 TCGA-44-7669-01 2 128351131 128351131 A T MYO7B Missense_Mutation p.K719M 0.49 deleterious(0.01) probably_damaging(0.954) TCGA-44-7669-01 2 130948088 130948088 G A MZT2B Silent p.A122A 0.40 TCGA-44-7669-01 2 130948089 130948089 G T MZT2B Nonsense_Mutation p.E123* 0.47 TCGA-44-7669-01 2 141812830 141812830 T A LRP1B Splice_Site p.X470_splice 0.29 TCGA-44-7669-01 2 143913130 143913130 T A ARHGAP15 Missense_Mutation p.V24E 0.42 deleterious(0.03) probably_damaging(0.999) TCGA-44-7669-01 2 145156268 145156268 C A ZEB2 Missense_Mutation p.S829I 0.38 tolerated(0.15) benign(0.001) TCGA-44-7669-01 2 15747309 15747309 G C DDX1 Missense_Mutation p.Q276H 0.33 tolerated(0.12) possibly_damaging(0.56) TCGA-44-7669-01 2 163241264 163241264 C A KCNH7 Missense_Mutation p.D966Y 0.39 deleterious(0.01) benign(0.003) TCGA-44-7669-01 2 163279797 163279797 T A KCNH7 Intron 0.15 TCGA-44-7669-01 2 170063292 170063292 G A LRP2 Missense_Mutation p.P2313L 0.16 possibly_damaging(0.604) TCGA-44-7669-01 2 179596793 179596793 C T TTN Missense_Mutation p.E5635K 0.32 TCGA-44-7669-01 2 185798420 185798420 C A ZNF804A Missense_Mutation p.R116S 0.28 deleterious(0) probably_damaging(0.972) TCGA-44-7669-01 2 186673452 186673452 A T FSIP2 Silent p.T6562T 0.29 TCGA-44-7669-01 2 187626732 187626732 C T FAM171B Missense_Mutation p.H555Y 0.28 deleterious(0.04) possibly_damaging(0.88) TCGA-44-7669-01 2 189936804 189936804 G A COL5A2 Missense_Mutation p.P374S 0.23 benign(0.068) TCGA-44-7669-01 2 191827619 191827619 C G GLS Silent p.L639L 0.32 TCGA-44-7669-01 2 201470324 201470324 C A AOX1 Missense_Mutation p.L294M 0.17 tolerated(0.11) possibly_damaging(0.589) TCGA-44-7669-01 2 202700438 202700438 C A CDK15 Missense_Mutation p.P268H 0.22 deleterious(0) probably_damaging(1) TCGA-44-7669-01 2 219895442 219895442 T A CCDC108 Missense_Mutation p.E377V 0.23 deleterious(0.02) probably_damaging(0.994) TCGA-44-7669-01 2 220333962 220333962 G T SPEG Silent p.R1192R 0.28 TCGA-44-7669-01 2 220379409 220379409 G C ASIC4 Missense_Mutation p.G115A 0.13 deleterious_low_confidence(0) benign(0.049) TCGA-44-7669-01 2 225729344 225729344 T A DOCK10 Nonsense_Mutation p.K510* 0.35 TCGA-44-7669-01 2 232457722 232457722 A T C2orf57 Silent p.P20P 0.28 TCGA-44-7669-01 2 234106868 234106868 G T INPP5D Missense_Mutation p.A929S 0.15 tolerated(0.33) benign(0.197) TCGA-44-7669-01 2 238283226 238283226 C A COL6A3 Missense_Mutation p.A1170S 0.35 possibly_damaging(0.7) TCGA-44-7669-01 2 239164312 239164312 T A PER2 Missense_Mutation p.Q769L 0.23 tolerated(0.19) benign(0.159) TCGA-44-7669-01 2 239185819 239185819 G T PER2 Missense_Mutation p.S82R 0.31 tolerated(0.06) benign(0.007) TCGA-44-7669-01 2 240969641 240969641 A T OR6B2 Missense_Mutation p.L69Q 0.31 deleterious(0) probably_damaging(0.966) TCGA-44-7669-01 2 27001203 27001203 G T SLC35F6 Missense_Mutation p.A314S 0.30 tolerated(0.78) benign(0) TCGA-44-7669-01 2 27465789 27465789 A G CAD Missense_Mutation p.Y2143C 0.42 deleterious(0) probably_damaging(1) TCGA-44-7669-01 2 3502687 3502687 A G ADI1 3'UTR 0.14 TCGA-44-7669-01 2 50765733 50765733 G T NRXN1 Missense_Mutation p.P641T 0.17 tolerated(0.35) benign(0.096) TCGA-44-7669-01 2 55253825 55253825 T C RTN4 Silent p.A470A 0.40 TCGA-44-7669-01 2 61721087 61721087 C A XPO1 Missense_Mutation p.G396V 0.34 tolerated(0.08) benign(0.001) TCGA-44-7669-01 2 61721088 61721088 C A XPO1 Nonsense_Mutation p.G396* 0.35 TCGA-44-7669-01 2 70092042 70092042 A G GMCL1 Missense_Mutation p.I385V 0.19 tolerated(0.35) benign(0.036) TCGA-44-7669-01 2 71633387 71633387 A T ZNF638 Missense_Mutation p.N1044Y 0.13 deleterious(0) possibly_damaging(0.867) TCGA-44-7669-01 2 75426148 75426148 C G TACR1 5'UTR 0.38 TCGA-44-7669-01 2 89339818 89339818 C T IGKV1-12 Missense_Mutation p.S85N 0.38 deleterious(0) probably_damaging(0.973) TCGA-44-7669-01 2 98744862 98744862 C A VWA3B Missense_Mutation p.T288N 0.40 deleterious(0) probably_damaging(0.934) TCGA-44-7669-01 3 100994546 100994546 T A IMPG2 Missense_Mutation p.E209D 0.26 tolerated(0.28) benign(0.01) TCGA-44-7669-01 3 108388547 108388547 G C DZIP3 Missense_Mutation p.A815P 0.25 deleterious(0.01) possibly_damaging(0.661) TCGA-44-7669-01 3 112648250 112648250 C A CD200R1 Missense_Mutation p.G103C 0.20 deleterious(0.01) possibly_damaging(0.874) TCGA-44-7669-01 3 118905627 118905627 C A UPK1B Silent p.G13G 0.35 TCGA-44-7669-01 3 119434506 119434506 G C MAATS1 Missense_Mutation p.V200L 0.32 deleterious(0.03) benign(0.161) TCGA-44-7669-01 3 124437978 124437978 G T RP11-71H17.7 5'Flank 0.26 TCGA-44-7669-01 3 126915629 126915629 G T C3orf56 Missense_Mutation p.W34L 0.18 deleterious(0.02) possibly_damaging(0.504) TCGA-44-7669-01 3 130852765 130852766 GA - NEK11 Frame_Shift_Del p.K205Tfs*5 0.08 TCGA-44-7669-01 3 138244343 138244343 C T CEP70 Silent p.K311K 0.14 TCGA-44-7669-01 3 154055960 154055960 A T GPR149 Missense_Mutation p.V575E 0.34 deleterious(0) probably_damaging(0.999) TCGA-44-7669-01 3 15686094 15686094 C T BTD Missense_Mutation p.T244I 0.38 tolerated(0.07) possibly_damaging(0.576) TCGA-44-7669-01 3 172232725 172232725 C T TNFSF10 Missense_Mutation p.D66N 0.39 tolerated(0.18) possibly_damaging(0.564) TCGA-44-7669-01 3 172232740 172232740 C A TNFSF10 Missense_Mutation p.D61Y 0.39 tolerated(0.06) benign(0.38) TCGA-44-7669-01 3 186299189 186299189 G T DNAJB11 Missense_Mutation p.Q162H 0.14 deleterious(0.02) benign(0.002) TCGA-44-7669-01 3 186389478 186389478 G A HRG Missense_Mutation p.R153H 0.52 tolerated(0.14) benign(0) TCGA-44-7669-01 3 192973578 192973578 G T HRASLS Missense_Mutation p.D152Y 0.48 deleterious(0) benign(0.259) TCGA-44-7669-01 3 19975305 19975305 C A EFHB Missense_Mutation p.G69V 0.30 tolerated_low_confidence(0.07) benign(0.319) TCGA-44-7669-01 3 21467011 21467011 G A ZNF385D Silent p.H275H 0.20 TCGA-44-7669-01 3 25640955 25640955 C A TOP2B Missense_Mutation p.G1556C 0.31 tolerated_low_confidence(0.06) possibly_damaging(0.849) TCGA-44-7669-01 3 31774867 31774867 G C OSBPL10 Missense_Mutation p.S326C 0.24 deleterious(0.04) probably_damaging(0.927) TCGA-44-7669-01 3 36897927 36897927 C G TRANK1 Missense_Mutation p.V1052L 0.20 tolerated(0.23) benign(0.002) TCGA-44-7669-01 3 37095392 37095392 G A LRRFIP2 Missense_Mutation p.R706W 0.13 deleterious(0.03) possibly_damaging(0.649) TCGA-44-7669-01 3 391044 391044 C T CHL1 Missense_Mutation p.P284L 0.31 deleterious(0) probably_damaging(1) TCGA-44-7669-01 3 46730923 46730923 T G ALS2CL Missense_Mutation p.N3T 0.47 tolerated_low_confidence(0.27) benign(0.001) TCGA-44-7669-01 3 47960230 47960230 C A MAP4 Nonsense_Mutation p.E211* 0.32 TCGA-44-7669-01 3 4810267 4810267 A T ITPR1 Missense_Mutation p.K1918I 0.09 tolerated(0.14) benign(0.253) TCGA-44-7669-01 3 75679997 75679997 C A MIR1324 RNA 0.06 TCGA-44-7669-01 3 78737817 78737817 C A ROBO1 Missense_Mutation p.W384L 0.36 deleterious(0) possibly_damaging(0.643) TCGA-44-7669-01 3 9594069 9594069 C A LHFPL4 Missense_Mutation p.V99L 0.32 deleterious(0.01) possibly_damaging(0.878) TCGA-44-7669-01 3 98109624 98109625 - T OR5K3 Frame_Shift_Ins p.M39Ifs*50 0.24 TCGA-44-7669-01 3 98110083 98110083 C A OR5K3 Missense_Mutation p.P192T 0.21 tolerated(0.08) benign(0.026) TCGA-44-7669-01 4 107845814 107845814 G T DKK2 Silent p.I139I 0.20 TCGA-44-7669-01 4 134073595 134073595 G T PCDH10 Missense_Mutation p.G767V 0.18 tolerated(0.53) benign(0.018) TCGA-44-7669-01 4 134075509 134075509 C T PCDH10 Silent p.R893R 0.22 TCGA-44-7669-01 4 138442438 138442438 C G PCDH18 Missense_Mutation p.Q1051H 0.20 tolerated(0.09) possibly_damaging(0.789) TCGA-44-7669-01 4 152212286 152212286 C A PRSS48 Missense_Mutation p.P223H 0.15 deleterious(0) probably_damaging(1) TCGA-44-7669-01 4 159091958 159091958 G T FAM198B Silent p.A190A 0.41 TCGA-44-7669-01 4 166033914 166033914 C A TMEM192 Silent p.G4G 0.41 TCGA-44-7669-01 4 170912590 170912590 G C MFAP3L Missense_Mutation p.A390G 0.34 deleterious_low_confidence(0.04) benign(0.021) TCGA-44-7669-01 4 177143571 177143571 C A ASB5 Missense_Mutation p.G93C 0.08 deleterious(0) probably_damaging(1) TCGA-44-7669-01 4 177143572 177143572 C A ASB5 Splice_Site p.X93_splice 0.08 TCGA-44-7669-01 4 183714045 183714045 G T TENM3 Missense_Mutation p.V2074L 0.42 tolerated(0.13) benign(0.417) TCGA-44-7669-01 4 187525712 187525712 C A FAT1 Missense_Mutation p.G3456V 0.21 probably_damaging(0.996) TCGA-44-7669-01 4 188924844 188924844 C G ZFP42 Missense_Mutation p.H295D 0.39 deleterious(0) probably_damaging(0.998) TCGA-44-7669-01 4 25395985 25395985 G C ANAPC4 Missense_Mutation p.W310C 0.28 deleterious(0) probably_damaging(1) TCGA-44-7669-01 4 46067503 46067503 A C GABRG1 Silent p.V140V 0.12 TCGA-44-7669-01 4 55979502 55979502 G T KDR Silent p.T315T 0.17 TCGA-44-7669-01 4 57164480 57164480 C T KIAA1211 Nonsense_Mutation p.Q29* 0.52 TCGA-44-7669-01 4 57181664 57181664 G T KIAA1211 Missense_Mutation p.A666S 0.33 deleterious(0.01) possibly_damaging(0.709) TCGA-44-7669-01 4 57215643 57215643 C A AASDH Missense_Mutation p.R758S 0.32 tolerated(0.19) possibly_damaging(0.901) TCGA-44-7669-01 4 619398 619398 C A PDE6B 5'UTR 0.31 TCGA-44-7669-01 4 62845321 62845321 C A LPHN3 Missense_Mutation p.T881K 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-44-7669-01 4 647648 647648 T A PDE6B Missense_Mutation p.L240Q 0.06 deleterious(0.03) possibly_damaging(0.742) TCGA-44-7669-01 4 647649 647649 G A PDE6B Silent p.L240L 0.06 TCGA-44-7669-01 4 69962511 69962511 G T UGT2B7 Missense_Mutation p.M91I 0.18 tolerated(0.34) benign(0.003) TCGA-44-7669-01 4 70461988 70461988 G A UGT2A1 Missense_Mutation p.L326F 0.23 deleterious(0.02) possibly_damaging(0.448) TCGA-44-7669-01 4 71200691 71200691 C A CABS1 5'UTR 0.21 TCGA-44-7669-01 4 72432719 72432719 A G SLC4A4 Splice_Site p.X1034_splice 0.24 TCGA-44-7669-01 4 74308073 74308073 G A AFP Nonsense_Mutation p.W181* 0.22 TCGA-44-7669-01 4 81187908 81187908 C A FGF5 5'UTR 0.40 TCGA-44-7669-01 4 85731139 85731139 T A WDFY3 Missense_Mutation p.E749V 0.30 tolerated(0.2) benign(0.004) TCGA-44-7669-01 4 87692376 87692376 C G PTPN13 Missense_Mutation p.S1624C 0.27 deleterious(0.01) possibly_damaging(0.819) TCGA-44-7669-01 4 88959523 88959523 C T PKD2 Missense_Mutation p.R322W 0.39 deleterious(0.01) probably_damaging(1) TCGA-44-7669-01 4 90857638 90857638 C A MMRN1 Missense_Mutation p.T936K 0.30 tolerated(0.28) benign(0.225) TCGA-44-7669-01 4 9784198 9784198 G T DRD5 Missense_Mutation p.R182M 0.28 deleterious(0.01) benign(0.217) TCGA-44-7669-01 4 9784199 9784199 G T DRD5 Missense_Mutation p.R182S 0.27 deleterious(0.02) benign(0.145) TCGA-44-7669-01 5 101834434 101834434 G T SLCO6A1 Missense_Mutation p.P39T 0.40 tolerated(0.39) benign(0.003) TCGA-44-7669-01 5 10227733 10227733 T A FAM173B Missense_Mutation p.E174D 0.40 tolerated(0.42) possibly_damaging(0.593) TCGA-44-7669-01 5 10254823 10254823 G T CCT5 Silent p.V68V 0.34 TCGA-44-7669-01 5 114607027 114607027 G C CCDC112 Silent p.T405T 0.19 TCGA-44-7669-01 5 122718566 122718566 C A CEP120 Missense_Mutation p.Q626H 0.26 tolerated(0.14) benign(0.001) TCGA-44-7669-01 5 128863450 128863450 C A ADAMTS19 Missense_Mutation p.L360I 0.39 deleterious(0.01) possibly_damaging(0.823) TCGA-44-7669-01 5 132037881 132037881 A C KIF3A Missense_Mutation p.H567Q 0.16 tolerated(0.11) benign(0.203) TCGA-44-7669-01 5 134345148 134345148 C T CATSPER3 Nonsense_Mutation p.Q302* 0.16 TCGA-44-7669-01 5 140166533 140166533 C G PCDHA1 Missense_Mutation p.P220A 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.895) TCGA-44-7669-01 5 140209794 140209794 G A PCDHA6 Silent p.A706A 0.10 TCGA-44-7669-01 5 140475710 140475710 G T PCDHB2 Missense_Mutation p.V446F 0.08 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-44-7669-01 5 140558992 140558992 G T PCDHB8 Silent p.L459L 0.17 TCGA-44-7669-01 5 140573455 140573455 G T PCDHB10 Missense_Mutation p.V444F 0.29 deleterious_low_confidence(0) benign(0.106) TCGA-44-7669-01 5 140579376 140579376 A G PCDHB11 Missense_Mutation p.Q10R 0.31 tolerated_low_confidence(1) benign(0.002) TCGA-44-7669-01 5 140580183 140580183 A G PCDHB11 Missense_Mutation p.Y279C 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-7669-01 5 140588594 140588594 T G PCDHB12 Missense_Mutation p.L39V 0.11 deleterious_low_confidence(0.02) benign(0.002) TCGA-44-7669-01 5 140605231 140605231 G A PCDHB14 Silent p.R718R 0.21 TCGA-44-7669-01 5 140683432 140683432 T C SLC25A2 Translation_Start_Site p.M1? 0.42 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-44-7669-01 5 140737010 140737010 C A PCDHGA4 Missense_Mutation p.A748D 0.46 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-44-7669-01 5 140751138 140751138 A - PCDHGB3 Frame_Shift_Del p.I394Sfs*12 0.17 TCGA-44-7669-01 5 140857205 140857205 C A PCDHGC3 Missense_Mutation p.R508S 0.12 tolerated(1) benign(0.032) TCGA-44-7669-01 5 141046008 141046008 C A ARAP3 Missense_Mutation p.R852L 0.40 deleterious(0) probably_damaging(0.954) TCGA-44-7669-01 5 149505025 149505025 C A PDGFRB Missense_Mutation p.R597L 0.14 deleterious(0) probably_damaging(0.996) TCGA-44-7669-01 5 157078207 157078207 C G SOX30 Missense_Mutation p.V294L 0.19 tolerated(0.08) possibly_damaging(0.625) TCGA-44-7669-01 5 161520839 161520839 C A GABRG2 Missense_Mutation p.T38N 0.18 tolerated_low_confidence(0.39) benign(0.197) TCGA-44-7669-01 5 16672859 16672859 G A MYO10 Missense_Mutation p.H1750Y 0.09 tolerated(1) benign(0) TCGA-44-7669-01 5 167674518 167674518 C T TENM2 Silent p.L2192L 0.31 TCGA-44-7669-01 5 168114087 168114087 A G SLIT3 Missense_Mutation p.C1071R 0.25 deleterious(0) probably_damaging(0.999) TCGA-44-7669-01 5 169708 169708 G T PLEKHG4B Splice_Site p.X887_splice 0.27 TCGA-44-7669-01 5 176522578 176522578 C A FGFR4 Silent p.R559R 0.26 TCGA-44-7669-01 5 178418879 178418879 G A GRM6 Missense_Mutation p.S237F 0.21 deleterious(0) possibly_damaging(0.835) TCGA-44-7669-01 5 19544072 19544072 G T CDH18 Missense_Mutation p.N432K 0.29 deleterious(0.04) benign(0.032) TCGA-44-7669-01 5 21751848 21751848 A T CDH12 Nonstop_Mutation p.*795Kext*6 0.28 TCGA-44-7669-01 5 23524578 23524578 C A PRDM9 Silent p.G362G 0.35 TCGA-44-7669-01 5 39342272 39342272 C A C9 Missense_Mutation p.S35I 0.47 tolerated(0.19) benign(0.005) TCGA-44-7669-01 5 41762287 41762287 C A OXCT1 Nonsense_Mutation p.G422* 0.17 TCGA-44-7669-01 5 45353208 45353208 C A HCN1 Silent p.L457L 0.10 TCGA-44-7669-01 5 76621413 76621413 G T PDE8B Missense_Mutation p.W150L 0.15 tolerated(0.17) possibly_damaging(0.882) TCGA-44-7669-01 5 78329134 78329134 G T DMGDH Missense_Mutation p.R431S 0.37 deleterious(0.02) possibly_damaging(0.621) TCGA-44-7669-01 5 78350072 78350072 T C DMGDH Missense_Mutation p.T159A 0.38 tolerated(0.79) benign(0.006) TCGA-44-7669-01 5 82836456 82836456 T C VCAN Missense_Mutation p.I2545T 0.21 deleterious(0.01) possibly_damaging(0.776) TCGA-44-7669-01 5 96314964 96314964 C - LNPEP Frame_Shift_Del p.R49Gfs*34 0.17 TCGA-44-7669-01 6 102376422 102376422 C A GRIK2 Missense_Mutation p.P667H 0.55 deleterious(0) probably_damaging(0.98) TCGA-44-7669-01 6 128561257 128561257 C A PTPRK Missense_Mutation p.V206L 0.43 tolerated(0.08) benign(0.083) TCGA-44-7669-01 6 132859982 132859982 C A TAAR9 Missense_Mutation p.T185N 0.62 tolerated(1) possibly_damaging(0.824) TCGA-44-7669-01 6 144508475 144508475 G A STX11 Silent p.K237K 0.71 TCGA-44-7669-01 6 158487537 158487537 G T SYNJ2 Silent p.R529R 0.62 TCGA-44-7669-01 6 161022062 161022062 G T LPA Missense_Mutation p.P1005H 0.49 deleterious(0) probably_damaging(1) TCGA-44-7669-01 6 24423246 24423246 G T MRS2 Nonsense_Mutation p.G397* 0.44 TCGA-44-7669-01 6 25850032 25850032 C A SLC17A3 Splice_Site p.X424_splice 0.14 TCGA-44-7669-01 6 27100844 27100844 G A HIST1H2AG 5'UTR 0.19 TCGA-44-7669-01 6 28116464 28116464 G T ZKSCAN8 Silent p.L93L 0.44 TCGA-44-7669-01 6 30121671 30121671 C T TRIM10 3'UTR 0.24 TCGA-44-7669-01 6 31934831 31934831 G A SKIV2L Silent p.E797E 0.56 TCGA-44-7669-01 6 32029263 32029263 C A TNXB Missense_Mutation p.G2468V 0.57 probably_damaging(0.998) TCGA-44-7669-01 6 32260716 32260716 C T C6orf10 3'UTR 0.26 TCGA-44-7669-01 6 33245076 33245076 G T B3GALT4 5'UTR 0.52 TCGA-44-7669-01 6 33703157 33703157 T A IP6K3 Nonsense_Mutation p.K33* 0.14 TCGA-44-7669-01 6 34614531 34614531 C A C6orf106 Nonsense_Mutation p.G120* 0.44 TCGA-44-7669-01 6 38897386 38897386 C G DNAH8 Missense_Mutation p.P3523A 0.18 probably_damaging(1) TCGA-44-7669-01 6 50683039 50683039 G A TFAP2D Missense_Mutation p.A84T 0.59 tolerated_low_confidence(0.16) benign(0.006) TCGA-44-7669-01 6 54254606 54254606 G T TINAG Missense_Mutation p.W438C 0.56 deleterious(0) probably_damaging(1) TCGA-44-7669-01 6 56035587 56035587 C A COL21A1 Missense_Mutation p.D296Y 0.71 tolerated(0.06) probably_damaging(1) TCGA-44-7669-01 6 56483287 56483287 T C DST Intron 0.16 TCGA-44-7669-01 6 71234983 71234983 A T FAM135A Missense_Mutation p.L732F 0.23 tolerated(0.11) benign(0.013) TCGA-44-7669-01 6 7845549 7845549 C A BMP6 Missense_Mutation p.Q281K 0.17 tolerated(0.47) benign(0.065) TCGA-44-7669-01 7 100151103 100151103 G T AGFG2 Missense_Mutation p.A189S 0.27 tolerated(0.73) benign(0.004) TCGA-44-7669-01 7 100779054 100779054 G T SERPINE1 Missense_Mutation p.E353D 0.19 deleterious(0.03) probably_damaging(1) TCGA-44-7669-01 7 107642164 107642164 G A LAMB1 Nonsense_Mutation p.R18* 0.33 TCGA-44-7669-01 7 126882938 126882938 A - GRM8 Frame_Shift_Del p.R108Gfs*10 0.19 TCGA-44-7669-01 7 133932320 133932320 A G LRGUK Missense_Mutation p.I666V 0.21 tolerated(0.22) benign(0.001) TCGA-44-7669-01 7 138978706 138978706 C T UBN2 Missense_Mutation p.H1325Y 0.40 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-44-7669-01 7 139225158 139225158 A T CLEC2L Missense_Mutation p.R119S 0.27 tolerated(0.32) possibly_damaging(0.671) TCGA-44-7669-01 7 142569468 142569468 G C TRPV6 Missense_Mutation p.Q724E 0.22 deleterious_low_confidence(0.03) benign(0.003) TCGA-44-7669-01 7 143807143 143807143 G T OR2A2 Silent p.L156L 0.51 TCGA-44-7669-01 7 144059808 144059808 G T ARHGEF5 Missense_Mutation p.A16S 0.16 deleterious(0.02) possibly_damaging(0.531) TCGA-44-7669-01 7 144364850 144364850 C A TPK1 Intron 0.37 TCGA-44-7669-01 7 150174781 150174781 G T GIMAP8 Missense_Mutation p.Q637H 0.29 tolerated(0.63) benign(0.002) TCGA-44-7669-01 7 150778711 150778711 G A TMUB1 Silent p.P222P 0.33 TCGA-44-7669-01 7 154564564 154564564 G A DPP6 Missense_Mutation p.E350K 0.40 tolerated(0.59) benign(0.091) TCGA-44-7669-01 7 18625005 18625005 C A HDAC9 Missense_Mutation p.R42S 0.29 deleterious(0.02) probably_damaging(0.958) TCGA-44-7669-01 7 21894003 21894003 G C DNAH11 Missense_Mutation p.R3718T 0.37 benign(0.331) TCGA-44-7669-01 7 21947876 21947876 C T CDCA7L Missense_Mutation p.D185N 0.30 tolerated(0.32) benign(0.001) TCGA-44-7669-01 7 23309710 23309710 T C GPNMB Missense_Mutation p.S461P 0.05 tolerated(1) benign(0.005) TCGA-44-7669-01 7 2415130 2415130 G T EIF3B Missense_Mutation p.V666F 0.28 deleterious(0.01) benign(0.342) TCGA-44-7669-01 7 27148281 27148282 GC - HOXA3 Frame_Shift_Del p.R195Hfs*37 0.30 TCGA-44-7669-01 7 38433710 38433710 G - AMPH Frame_Shift_Del p.E503Kfs*3 0.22 TCGA-44-7669-01 7 39379567 39379567 C A POU6F2 Missense_Mutation p.P280T 0.29 tolerated_low_confidence(0.09) unknown(0) TCGA-44-7669-01 7 4002365 4002365 G T SDK1 Silent p.V437V 0.23 TCGA-44-7669-01 7 53103432 53103432 T C POM121L12 Missense_Mutation p.L23P 0.33 tolerated_low_confidence(0.07) probably_damaging(0.955) TCGA-44-7669-01 7 53103433 53103433 G T POM121L12 Silent p.L23L 0.33 TCGA-44-7669-01 7 54617659 54617659 G T VSTM2A Missense_Mutation p.A144S 0.29 deleterious(0) possibly_damaging(0.827) TCGA-44-7669-01 7 56126391 56126391 G T CCT6A Nonsense_Mutation p.E322* 0.22 TCGA-44-7669-01 7 63726726 63726726 C A ZNF679 Missense_Mutation p.P239T 0.17 deleterious(0.01) benign(0.099) TCGA-44-7669-01 7 64167308 64167308 T C ZNF107 Missense_Mutation p.I209T 0.06 deleterious(0.03) possibly_damaging(0.794) TCGA-44-7669-01 7 72683052 72683052 C A GTF2IRD2P1 Splice_Site 0.18 TCGA-44-7669-01 7 72850144 72850144 C - FZD9 3'UTR 0.27 TCGA-44-7669-01 7 75186957 75186957 C A HIP1 Splice_Site p.X527_splice 0.24 TCGA-44-7669-01 7 87150137 87150137 T A ABCB1 Missense_Mutation p.Q914L 0.33 deleterious(0.02) benign(0.101) TCGA-44-7669-01 7 90895895 90895895 G T FZD1 Missense_Mutation p.R567L 0.32 tolerated(0.56) benign(0.039) TCGA-44-7669-01 7 99377624 99377624 G A CYP3A4 Silent p.S52S 0.16 TCGA-44-7669-01 8 10390478 10390478 G C PRSS55 Missense_Mutation p.E221Q 0.27 tolerated(0.55) benign(0.179) TCGA-44-7669-01 8 104924380 104924380 G C RIMS2 Missense_Mutation p.G598R 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-7669-01 8 106814834 106814834 C A ZFPM2 Silent p.R842R 0.30 TCGA-44-7669-01 8 110980758 110980758 G T KCNV1 Silent p.S354S 0.34 TCGA-44-7669-01 8 11301839 11301839 G T FAM167A Silent p.R28R 0.15 TCGA-44-7669-01 8 113249468 113249468 C A CSMD3 Silent p.G3526G 0.25 TCGA-44-7669-01 8 113276039 113276039 C A CSMD3 Missense_Mutation p.V3231F 0.29 deleterious(0.04) probably_damaging(0.961) TCGA-44-7669-01 8 113529268 113529268 C G CSMD3 Missense_Mutation p.C1584S 0.28 deleterious(0) probably_damaging(0.999) TCGA-44-7669-01 8 116612 116612 G A OR4F21 Missense_Mutation p.P138L 0.44 tolerated_low_confidence(0.12) probably_damaging(0.999) TCGA-44-7669-01 8 116616637 116616637 T G TRPS1 Missense_Mutation p.K520T 0.20 tolerated_low_confidence(0.23) probably_damaging(0.998) TCGA-44-7669-01 8 116616668 116616668 T A TRPS1 Nonsense_Mutation p.K510* 0.33 TCGA-44-7669-01 8 11994828 11994828 T A USP17L2 Missense_Mutation p.E481V 0.07 deleterious(0.02) benign(0.383) TCGA-44-7669-01 8 124546959 124546959 C T FBXO32 Missense_Mutation p.S71N 0.22 tolerated(1) benign(0.001) TCGA-44-7669-01 8 125081669 125081669 A T FER1L6 Nonsense_Mutation p.K1263* 0.15 TCGA-44-7669-01 8 131797653 131797653 C A ADCY8 Silent p.V1043V 0.13 TCGA-44-7669-01 8 139164564 139164564 A G FAM135B Silent p.V718V 0.36 TCGA-44-7669-01 8 144464083 144464083 C T RHPN1 Missense_Mutation p.A581V 0.11 deleterious(0.02) possibly_damaging(0.481) TCGA-44-7669-01 8 144940853 144940853 G C EPPK1 Missense_Mutation p.A2190G 0.08 benign(0) TCGA-44-7669-01 8 144997430 144997430 G A PLEC Missense_Mutation p.R2360C 0.13 probably_damaging(0.987) TCGA-44-7669-01 8 145111105 145111105 C A OPLAH Nonsense_Mutation p.E681* 0.12 TCGA-44-7669-01 8 145725977 145725977 C A PPP1R16A Silent p.A271A 0.41 TCGA-44-7669-01 8 27320915 27320915 C T CHRNA2 Missense_Mutation p.V349M 0.15 deleterious(0) probably_damaging(0.999) TCGA-44-7669-01 8 30706075 30706075 A G TEX15 Silent p.G153G 0.29 TCGA-44-7669-01 8 33449548 33449548 G T DUSP26 Missense_Mutation p.Q207K 0.15 tolerated(0.1) unknown(0) TCGA-44-7669-01 8 35616947 35616947 C A UNC5D Missense_Mutation p.P758H 0.13 deleterious(0.04) probably_damaging(0.999) TCGA-44-7669-01 8 39103643 39103643 G A ADAM32 Silent p.K620K 0.14 TCGA-44-7669-01 8 39679175 39679175 A G ADAM2 Missense_Mutation p.C92R 0.23 deleterious(0) probably_damaging(1) TCGA-44-7669-01 8 52322092 52322092 G T PXDNL Missense_Mutation p.R698S 0.22 tolerated(0.34) benign(0.111) TCGA-44-7669-01 8 53092835 53092835 C A ST18 Missense_Mutation p.A42S 0.27 deleterious(0.02) benign(0.371) TCGA-44-7669-01 8 57905851 57905851 C G IMPAD1 Silent p.T98T 0.37 TCGA-44-7669-01 8 61504476 61504476 A G RAB2A Missense_Mutation p.H141R 0.28 deleterious(0.02) benign(0.083) TCGA-44-7669-01 8 6914088 6914088 G T DEFA5 Silent p.I44I 0.20 TCGA-44-7669-01 8 72756371 72756371 G T MSC Silent p.R15R 0.24 TCGA-44-7669-01 8 73850036 73850036 T C KCNB2 Silent p.L816L 0.39 TCGA-44-7669-01 8 82441685 82441685 G T FABP12 Silent p.G78G 0.29 TCGA-44-7669-01 8 86021877 86021878 - T LRRCC1 Frame_Shift_Ins p.C52Lfs*3 0.26 TCGA-44-7669-01 8 88885745 88885745 G T DCAF4L2 Missense_Mutation p.T152N 0.31 deleterious(0.01) possibly_damaging(0.835) TCGA-44-7669-01 8 88885901 88885901 C T DCAF4L2 Missense_Mutation p.G100D 0.31 deleterious(0) probably_damaging(0.979) TCGA-44-7669-01 8 98943569 98943569 G T MATN2 Silent p.V177V 0.20 TCGA-44-7669-01 9 103340802 103340802 A C MURC Missense_Mutation p.K126T 0.50 tolerated(0.23) possibly_damaging(0.842) TCGA-44-7669-01 9 113170023 113170023 T C SVEP1 Missense_Mutation p.I2619M 0.56 probably_damaging(0.971) TCGA-44-7669-01 9 130569891 130569891 C G FPGS Missense_Mutation p.S223C 0.39 deleterious(0.01) benign(0.386) TCGA-44-7669-01 9 130586703 130586703 G T ENG Silent p.P338P 0.30 TCGA-44-7669-01 9 133760658 133760658 G T ABL1 Missense_Mutation p.G1013V 0.19 tolerated_low_confidence(0.07) benign(0.092) TCGA-44-7669-01 9 133799182 133799182 C A FIBCD1 Silent p.P266P 0.36 TCGA-44-7669-01 9 135042385 135042385 C T NTNG2 Missense_Mutation p.P56L 0.39 deleterious(0) probably_damaging(1) TCGA-44-7669-01 9 137642728 137642728 G T COL5A1 Missense_Mutation p.R554S 0.22 probably_damaging(0.983) TCGA-44-7669-01 9 140711949 140711949 G T EHMT1 Missense_Mutation p.D1145Y 0.46 deleterious(0) probably_damaging(0.992) TCGA-44-7669-01 9 40774284 40774284 C A ZNF658 Nonsense_Mutation p.E331* 0.45 TCGA-44-7669-01 9 8376715 8376715 G T PTPRD Missense_Mutation p.D1466E 0.44 deleterious(0.04) probably_damaging(0.993) TCGA-44-7669-01 9 89763778 89763778 G A C9orf170 Missense_Mutation p.A45T 0.39 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-44-7669-01 9 97717496 97717496 G T C9orf3 Nonsense_Mutation p.G567* 0.39 TCGA-44-7669-01 X 115584235 115584235 G A SLC6A14 Missense_Mutation p.G405S 0.39 tolerated(1) benign(0.01) TCGA-44-7669-01 X 118753980 118753980 T A SEPT6 Intron 0.33 TCGA-44-7669-01 X 120009453 120009453 C A CT47B1 Missense_Mutation p.Q24H 0.61 tolerated(0.2) probably_damaging(0.991) TCGA-44-7669-01 X 123480361 123480361 G T SH2D1A 5'UTR 0.73 TCGA-44-7669-01 X 12725670 12725670 T A FRMPD4 Missense_Mutation p.L457Q 0.58 deleterious(0.01) probably_damaging(0.999) TCGA-44-7669-01 X 135405179 135405179 G T GPR112 Nonsense_Mutation p.G105* 0.62 TCGA-44-7669-01 X 140785627 140785627 T C SPANXD Missense_Mutation p.K97E 0.64 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-44-7669-01 X 144337384 144337384 C A SPANXN1 3'UTR 0.55 TCGA-44-7669-01 X 1471285 1471285 G A IL3RA Missense_Mutation p.D168N 0.46 tolerated(0.41) benign(0.334) TCGA-44-7669-01 X 150832662 150832662 G A PASD1 Missense_Mutation p.E305K 0.71 deleterious(0.03) possibly_damaging(0.733) TCGA-44-7669-01 X 153184454 153184454 C T ARHGAP4 Silent p.T328T 0.76 TCGA-44-7669-01 X 30269243 30269243 G - MAGEB1 Frame_Shift_Del p.G212Afs*13 0.71 TCGA-44-7669-01 X 34149551 34149551 C T FAM47A Missense_Mutation p.G282D 0.56 tolerated(0.21) probably_damaging(0.969) TCGA-44-7669-01 X 44929567 44929567 A G KDM6A Missense_Mutation p.I889M 0.67 deleterious(0.02) possibly_damaging(0.873) TCGA-44-7669-01 X 71792616 71792616 C A HDAC8 5'UTR 0.52 TCGA-44-7669-01 X 77224974 77224974 G C PGAM4 Missense_Mutation p.I54M 0.73 tolerated(0.09) benign(0.322) TCGA-44-7670-01 10 103221745 103221745 C A BTRC Nonsense_Mutation p.S55* 0.21 TCGA-44-7670-01 10 103773745 103773745 C G C10orf76 Missense_Mutation p.D236H 0.37 deleterious(0) possibly_damaging(0.762) TCGA-44-7670-01 10 103898426 103898426 G T PPRC1 Silent p.L131L 0.37 TCGA-44-7670-01 10 106074637 106074637 G T ITPRIP Missense_Mutation p.F391L 0.39 tolerated(0.6) benign(0.085) TCGA-44-7670-01 10 106974319 106974319 G T SORCS3 Missense_Mutation p.R832L 0.32 tolerated(0.18) benign(0.023) TCGA-44-7670-01 10 108339226 108339226 A G SORCS1 Missense_Mutation p.L1091P 0.24 deleterious(0.02) probably_damaging(0.997) TCGA-44-7670-01 10 108339228 108339228 G T SORCS1 Silent p.P1090P 0.25 TCGA-44-7670-01 10 108427524 108427524 G T SORCS1 Nonsense_Mutation p.C742* 0.31 TCGA-44-7670-01 10 108466379 108466379 C A SORCS1 Missense_Mutation p.G386V 0.13 deleterious(0) probably_damaging(1) TCGA-44-7670-01 10 115668189 115668189 A T NHLRC2 Missense_Mutation p.D692V 0.60 deleterious(0.02) possibly_damaging(0.558) TCGA-44-7670-01 10 116020984 116020984 C G VWA2 Missense_Mutation p.L101V 0.08 tolerated(0.06) possibly_damaging(0.775) TCGA-44-7670-01 10 116719515 116719515 G T TRUB1 Missense_Mutation p.A158S 0.71 tolerated(0.13) benign(0.173) TCGA-44-7670-01 10 117027900 117027900 G - ATRNL1 Frame_Shift_Del p.A694Qfs*17 0.19 TCGA-44-7670-01 10 118220478 118220478 G T PNLIPRP3 Missense_Mutation p.G189V 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-44-7670-01 10 118231387 118231387 G T PNLIPRP3 Missense_Mutation p.V390F 0.27 tolerated(1) benign(0.002) TCGA-44-7670-01 10 118306841 118306841 A T PNLIP Missense_Mutation p.S28C 0.29 deleterious(0) probably_damaging(0.971) TCGA-44-7670-01 10 122334784 122334784 G C PPAPDC1A Missense_Mutation p.R196P 0.34 deleterious(0) probably_damaging(1) TCGA-44-7670-01 10 123661976 123661976 G A ATE1 Missense_Mutation p.S248F 0.16 deleterious(0.01) benign(0.037) TCGA-44-7670-01 10 123987514 123987514 G T TACC2 Silent p.A2629A 0.64 TCGA-44-7670-01 10 124897076 124897076 G T HMX3 Missense_Mutation p.Q301H 0.32 deleterious(0.02) possibly_damaging(0.636) TCGA-44-7670-01 10 126100674 126100674 C A OAT Missense_Mutation p.A23S 0.67 tolerated(0.65) benign(0.002) TCGA-44-7670-01 10 127693610 127693610 G A FANK1 Missense_Mutation p.G233S 0.34 deleterious(0.01) probably_damaging(1) TCGA-44-7670-01 10 134621919 134621919 G A TTC40 3'UTR 0.17 TCGA-44-7670-01 10 18825057 18825057 G A CACNB2 Missense_Mutation p.G412R 0.33 deleterious(0) probably_damaging(1) TCGA-44-7670-01 10 25887426 25887426 C A GPR158 Silent p.A957A 0.45 TCGA-44-7670-01 10 26446271 26446271 G T MYO3A Silent p.V942V 0.61 TCGA-44-7670-01 10 30315157 30315157 C A KIAA1462 Missense_Mutation p.S1307I 0.32 deleterious(0.02) benign(0.034) TCGA-44-7670-01 10 38305835 38305835 G T ZNF33A Missense_Mutation p.D16Y 0.56 deleterious(0) probably_damaging(0.99) TCGA-44-7670-01 10 38345572 38345572 G - ZNF33A 3'UTR 0.37 TCGA-44-7670-01 10 43651075 43651075 G T CSGALNACT2 Nonsense_Mutation p.E160* 0.27 TCGA-44-7670-01 10 45799695 45799695 C A OR13A1 Missense_Mutation p.G59V 0.26 deleterious(0.01) possibly_damaging(0.903) TCGA-44-7670-01 10 47747082 47747082 C A ANXA8L2 5'UTR 0.30 TCGA-44-7670-01 10 48390937 48390937 G T RBP3 5'UTR 0.50 TCGA-44-7670-01 10 51584853 51584853 G C NCOA4 Missense_Mutation p.E334Q 0.42 tolerated(0.12) possibly_damaging(0.772) TCGA-44-7670-01 10 55587240 55587240 G T PCDH15 Missense_Mutation p.P1427Q 0.28 deleterious(0.01) possibly_damaging(0.839) TCGA-44-7670-01 10 56138679 56138679 G T PCDH15 Missense_Mutation p.L61M 0.27 tolerated_low_confidence(0.15) benign(0.064) TCGA-44-7670-01 10 62038534 62038534 G A ANK3 Nonsense_Mutation p.Q138* 0.25 TCGA-44-7670-01 10 64429973 64429973 T A ZNF365 Nonsense_Mutation p.L434* 0.30 TCGA-44-7670-01 10 64967354 64967354 C A JMJD1C Missense_Mutation p.V1359L 0.22 tolerated(0.38) benign(0.002) TCGA-44-7670-01 10 68686853 68686853 C G LRRTM3 Missense_Mutation p.S60C 0.28 deleterious(0) probably_damaging(0.996) TCGA-44-7670-01 10 72511358 72511358 G A ADAMTS14 Nonsense_Mutation p.W854* 0.32 TCGA-44-7670-01 10 7290516 7290516 C T SFMBT2 Silent p.V322V 0.39 TCGA-44-7670-01 10 76736061 76736061 G A KAT6B Missense_Mutation p.G656R 0.06 benign(0.204) TCGA-44-7670-01 10 82122242 82122242 G T DYDC2 Missense_Mutation p.A29S 0.30 tolerated(0.49) benign(0.082) TCGA-44-7670-01 10 85933575 85933582 CCTTCCCA AATCCCCCCCG C10orf99 5'UTR 0.24 TCGA-44-7670-01 10 87487652 87487652 T G GRID1 Missense_Mutation p.N498T 0.13 deleterious(0) possibly_damaging(0.755) TCGA-44-7670-01 10 88702981 88702981 C A MMRN2 Silent p.V520V 0.32 TCGA-44-7670-01 10 91143527 91143527 G A IFIT1B Missense_Mutation p.G153S 0.34 deleterious(0) probably_damaging(0.974) TCGA-44-7670-01 10 91143649 91143649 A G IFIT1B Silent p.T193T 0.29 TCGA-44-7670-01 10 98307744 98307744 C A TM9SF3 Missense_Mutation p.R321M 0.31 deleterious(0) probably_damaging(0.981) TCGA-44-7670-01 10 98411027 98411027 C T PIK3AP1 Silent p.L322L 0.37 TCGA-44-7670-01 11 100998878 100998878 G C PGR Missense_Mutation p.I308M 0.25 deleterious(0) probably_damaging(0.998) TCGA-44-7670-01 11 103128397 103128397 G T DYNC2H1 Missense_Mutation p.D3515Y 0.30 probably_damaging(0.993) TCGA-44-7670-01 11 108788802 108788802 A - DDX10 Intron 0.21 TCGA-44-7670-01 11 111657069 111657069 C A ALG9 3'UTR 0.23 TCGA-44-7670-01 11 113103866 113103866 C A NCAM1 Intron 0.29 TCGA-44-7670-01 11 113235745 113235745 G T TTC12 Missense_Mutation p.G669C 0.26 deleterious(0) probably_damaging(0.984) TCGA-44-7670-01 11 11373917 11373917 C A CSNK2A3 Silent p.G250G 0.14 TCGA-44-7670-01 11 11373918 11373918 C A CSNK2A3 Missense_Mutation p.G250V 0.14 deleterious(0) probably_damaging(0.99) TCGA-44-7670-01 11 114393655 114393655 G A NXPE1 Silent p.L210L 0.46 TCGA-44-7670-01 11 114401418 114401418 G A NXPE1 5'UTR 0.12 TCGA-44-7670-01 11 118940016 118940016 G T VPS11 Missense_Mutation p.A99S 0.35 tolerated(0.13) benign(0.019) TCGA-44-7670-01 11 119027100 119027100 G A ABCG4 Missense_Mutation p.G250S 0.27 deleterious(0.01) possibly_damaging(0.872) TCGA-44-7670-01 11 124412749 124412749 C G OR8B12 Missense_Mutation p.E268Q 0.26 deleterious_low_confidence(0) benign(0.313) TCGA-44-7670-01 11 125300009 125300009 G T PKNOX2 Missense_Mutation p.Q388H 0.33 tolerated_low_confidence(0.15) benign(0.002) TCGA-44-7670-01 11 126144846 126144846 G A FOXRED1 Silent p.L187L 0.10 TCGA-44-7670-01 11 129745269 129745269 C G NFRKB Missense_Mutation p.D638H 0.36 deleterious(0) unknown(0) TCGA-44-7670-01 11 129996639 129996639 G T APLP2 Nonsense_Mutation p.E379* 0.31 TCGA-44-7670-01 11 130784380 130784380 C A SNX19 Missense_Mutation p.K485N 0.30 deleterious(0.04) probably_damaging(0.986) TCGA-44-7670-01 11 13734550 13734550 A T FAR1 Missense_Mutation p.S309C 0.21 tolerated(0.06) benign(0.009) TCGA-44-7670-01 11 17409593 17409593 G A KCNJ11 Missense_Mutation p.R16C 0.09 deleterious(0) probably_damaging(0.996) TCGA-44-7670-01 11 17539001 17539001 C G USH1C Intron 0.27 TCGA-44-7670-01 11 18044361 18044361 C A TPH1 Missense_Mutation p.A382S 0.44 deleterious(0.02) probably_damaging(1) TCGA-44-7670-01 11 20676304 20676304 T G SLC6A5 Missense_Mutation p.L762V 0.08 deleterious(0.04) possibly_damaging(0.465) TCGA-44-7670-01 11 20959377 20959377 T G NELL1 Missense_Mutation p.I348S 0.06 tolerated(0.56) benign(0.007) TCGA-44-7670-01 11 22646301 22646301 T A FANCF Missense_Mutation p.L352F 0.24 deleterious(0.03) benign(0.148) TCGA-44-7670-01 11 26619958 26619958 C A ANO3 Silent p.T498T 0.68 TCGA-44-7670-01 11 31312394 31312394 G T DCDC1 Missense_Mutation p.L254M 0.35 deleterious(0.04) probably_damaging(0.992) TCGA-44-7670-01 11 3249866 3249866 C T MRGPRE Missense_Mutation p.R54K 0.30 tolerated(0.11) benign(0.253) TCGA-44-7670-01 11 32724484 32724484 G A CCDC73 Missense_Mutation p.L72F 0.13 deleterious(0) probably_damaging(1) TCGA-44-7670-01 11 33308675 33308675 C G HIPK3 Missense_Mutation p.Q239E 0.14 deleterious(0.01) probably_damaging(0.994) TCGA-44-7670-01 11 34118027 34118027 G T CAPRIN1 Silent p.V569V 0.36 TCGA-44-7670-01 11 35463195 35463195 C A PAMR1 Silent p.G306G 0.45 TCGA-44-7670-01 11 36103329 36103329 G T LDLRAD3 Splice_Site p.X107_splice 0.36 TCGA-44-7670-01 11 43908168 43908168 G T ALKBH3 Silent p.V77V 0.17 TCGA-44-7670-01 11 44265868 44265868 G A EXT2 3'UTR 0.45 TCGA-44-7670-01 11 45117395 45117395 C A PRDM11 Silent p.I13I 0.25 TCGA-44-7670-01 11 45204635 45204635 C T PRDM11 Silent p.I149I 0.35 TCGA-44-7670-01 11 46637683 46637683 C G HARBI1 Missense_Mutation p.L35F 0.20 deleterious(0.01) benign(0.023) TCGA-44-7670-01 11 46700978 46700978 G A ARHGAP1 Silent p.V356V 0.38 TCGA-44-7670-01 11 46701249 46701249 G T ARHGAP1 Missense_Mutation p.P326T 0.37 tolerated(0.09) probably_damaging(0.963) TCGA-44-7670-01 11 46702914 46702914 G A ARHGAP1 Silent p.I155I 0.38 TCGA-44-7670-01 11 46750227 46750227 A T F2 Missense_Mutation p.I438F 0.25 tolerated(0.1) benign(0.026) TCGA-44-7670-01 11 4790226 4790226 G T OR51F1 Missense_Mutation p.L308M 0.51 tolerated(0.18) benign(0.059) TCGA-44-7670-01 11 5068433 5068433 C A OR52J3 Silent p.V226V 0.37 TCGA-44-7670-01 11 51411651 51411652 - A OR4A5 Frame_Shift_Ins p.V249Cfs*9 0.31 TCGA-44-7670-01 11 5344970 5344970 A G OR51B2 Silent p.A186A 0.12 TCGA-44-7670-01 11 5461847 5461847 C A OR51I1 Nonsense_Mutation p.E300* 0.33 TCGA-44-7670-01 11 55038481 55038481 G C TRIM48 3'UTR 0.32 TCGA-44-7670-01 11 55110788 55110788 G T OR4A16 Missense_Mutation p.V38L 0.25 tolerated_low_confidence(0.18) benign(0.012) TCGA-44-7670-01 11 55322514 55322514 T A OR4C15 Missense_Mutation p.D244E 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.863) TCGA-44-7670-01 11 55340052 55340052 C A OR4C16 Missense_Mutation p.S150Y 0.27 deleterious(0) probably_damaging(0.988) TCGA-44-7670-01 11 55340325 55340325 A T OR4C16 Missense_Mutation p.H241L 0.27 deleterious(0) probably_damaging(1) TCGA-44-7670-01 11 5537474 5537474 C T UBQLNL Silent p.Q66Q 0.33 TCGA-44-7670-01 11 55406058 55406058 G A OR4P4 Silent p.V75V 0.19 TCGA-44-7670-01 11 55418917 55418917 C G OR4S2 Missense_Mutation p.H180D 0.30 deleterious(0.02) possibly_damaging(0.903) TCGA-44-7670-01 11 55433261 55433261 G T OR4C6 Missense_Mutation p.A207S 0.32 deleterious_low_confidence(0.04) benign(0.026) TCGA-44-7670-01 11 55578989 55578989 G T OR5L1 Missense_Mutation p.G16V 0.20 deleterious(0) probably_damaging(0.972) TCGA-44-7670-01 11 55653694 55653694 G T TRIM51 Missense_Mutation p.K169N 0.34 tolerated(0.32) benign(0.078) TCGA-44-7670-01 11 56019807 56019807 G T OR5T3 Missense_Mutation p.L44F 0.17 tolerated(0.13) benign(0.335) TCGA-44-7670-01 11 56114033 56114035 CTT - OR8K1 In_Frame_Del p.F174del 0.18 TCGA-44-7670-01 11 56310441 56310441 G T OR5M11 Missense_Mutation p.T98K 0.30 deleterious(0.01) benign(0.13) TCGA-44-7670-01 11 56310563 56310563 C A OR5M11 Silent p.T57T 0.37 TCGA-44-7670-01 11 56468342 56468342 A C OR9G1 Missense_Mutation p.K160T 0.05 tolerated(0.39) benign(0.006) TCGA-44-7670-01 11 57428834 57428834 C T CLP1 Silent p.L402L 0.13 TCGA-44-7670-01 11 5758365 5758365 T A OR56B1 Missense_Mutation p.C207S 0.13 deleterious(0.01) benign(0.026) TCGA-44-7670-01 11 57886376 57886376 G A OR9I1 Missense_Mutation p.L181F 0.26 tolerated(0.07) benign(0.25) TCGA-44-7670-01 11 57958227 57958227 G A OR9Q2 Missense_Mutation p.G89S 0.27 tolerated(0.3) probably_damaging(0.931) TCGA-44-7670-01 11 57958678 57958678 C A OR9Q2 Missense_Mutation p.S239Y 0.35 deleterious(0) probably_damaging(1) TCGA-44-7670-01 11 58170490 58170490 G T OR5B3 Silent p.T131T 0.27 TCGA-44-7670-01 11 59224722 59224722 T G OR4D6 Missense_Mutation p.C97G 0.27 deleterious(0) probably_damaging(0.996) TCGA-44-7670-01 11 59837776 59837776 C T MS4A3 3'UTR 0.53 TCGA-44-7670-01 11 6047984 6047984 C A OR56A1 Silent p.G317G 0.35 TCGA-44-7670-01 11 60609861 60609861 C T CCDC86 Silent p.G88G 0.19 TCGA-44-7670-01 11 61539178 61539178 G A MYRF Missense_Mutation p.R316H 0.30 deleterious(0.04) probably_damaging(0.999) TCGA-44-7670-01 11 6292659 6292659 C A CCKBR Silent p.P410P 0.30 TCGA-44-7670-01 11 64135651 64135651 G T RPS6KA4 Silent p.A373A 0.23 TCGA-44-7670-01 11 6588935 6588935 C T DNHD1 Missense_Mutation p.R4066W 0.14 possibly_damaging(0.478) TCGA-44-7670-01 11 66029663 66029663 G A KLC2 Missense_Mutation p.A177T 0.30 tolerated(0.6) benign(0.073) TCGA-44-7670-01 11 66335023 66335023 G A CTSF Silent p.F141F 0.24 TCGA-44-7670-01 11 66358707 66358707 C A CCDC87 Missense_Mutation p.V594L 0.26 tolerated(0.28) benign(0.001) TCGA-44-7670-01 11 6662136 6662136 C A DCHS1 Missense_Mutation p.A237S 0.27 tolerated(0.25) benign(0.048) TCGA-44-7670-01 11 68660871 68660871 C A MRPL21 Missense_Mutation p.G150V 0.38 deleterious(0.02) possibly_damaging(0.756) TCGA-44-7670-01 11 68846201 68846201 G A TPCN2 Splice_Site p.X451_splice 0.09 TCGA-44-7670-01 11 68851461 68851461 C T TPCN2 Missense_Mutation p.R580C 0.25 deleterious(0) probably_damaging(0.988) TCGA-44-7670-01 11 6977037 6977037 C A ZNF215 Missense_Mutation p.Q277K 0.30 deleterious(0) probably_damaging(0.98) TCGA-44-7670-01 11 71511591 71511591 C T FAM86C1 3'UTR 0.25 TCGA-44-7670-01 11 71929695 71929695 G T FOLR2 Missense_Mutation p.D23Y 0.17 tolerated(0.06) benign(0.091) TCGA-44-7670-01 11 75852056 75852056 G T UVRAG Missense_Mutation p.D567Y 0.22 deleterious_low_confidence(0) benign(0.208) TCGA-44-7670-01 11 77672185 77672185 C A INTS4 Splice_Site p.X158_splice 0.22 TCGA-44-7670-01 11 7981222 7981222 G C NLRP10 Missense_Mutation p.T646R 0.18 deleterious(0) benign(0.22) TCGA-44-7670-01 11 8496413 8496413 G A STK33 Missense_Mutation p.P14S 0.26 tolerated_low_confidence(0.25) benign(0.014) TCGA-44-7670-01 11 85375077 85375077 C G CREBZF Silent p.L281L 0.50 TCGA-44-7670-01 11 87883020 87883020 T A RAB38 Silent p.A102A 0.37 TCGA-44-7670-01 11 88961112 88961112 C G TYR Missense_Mutation p.F386L 0.47 deleterious(0) probably_damaging(0.998) TCGA-44-7670-01 11 89402584 89402584 G T FOLH1B RNA 0.24 TCGA-44-7670-01 11 9199820 9199820 T C DENND5A Missense_Mutation p.I589V 0.29 tolerated(0.25) possibly_damaging(0.545) TCGA-44-7670-01 11 92532563 92532563 C G FAT3 Silent p.G2128G 0.27 TCGA-44-7670-01 11 93492964 93492964 G T C11orf54 Missense_Mutation p.L188F 0.26 deleterious(0) probably_damaging(0.997) TCGA-44-7670-01 11 9431591 9431591 T C IPO7 Missense_Mutation p.L146P 0.51 tolerated(0.05) possibly_damaging(0.806) TCGA-44-7670-01 12 100731216 100731216 G T SCYL2 Missense_Mutation p.A693S 0.67 tolerated(0.41) benign(0.405) TCGA-44-7670-01 12 102590104 102590104 A G PARPBP 3'UTR 0.45 TCGA-44-7670-01 12 104049297 104049297 C A STAB2 Missense_Mutation p.P558T 0.27 deleterious(0) probably_damaging(1) TCGA-44-7670-01 12 107371383 107371383 T C MTERFD3 Silent p.K370K 0.13 TCGA-44-7670-01 12 107371394 107371394 G C MTERFD3 Missense_Mutation p.Q367E 0.13 deleterious(0.01) probably_damaging(0.978) TCGA-44-7670-01 12 108910758 108910758 C A FICD Silent p.L3L 0.25 TCGA-44-7670-01 12 109613743 109613743 A T ACACB Silent p.T408T 0.16 TCGA-44-7670-01 12 111746128 111746128 C T CUX2 Silent p.S383S 0.34 TCGA-44-7670-01 12 112702999 112702999 T G HECTD4 Missense_Mutation p.K723Q 0.38 benign(0.033) TCGA-44-7670-01 12 113405356 113405356 G C OAS3 Missense_Mutation p.K941N 0.47 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 12 113837397 113837397 G T SDS Silent p.S39S 0.55 TCGA-44-7670-01 12 118639195 118639195 C T TAOK3 Missense_Mutation p.R298H 0.17 deleterious(0.01) possibly_damaging(0.904) TCGA-44-7670-01 12 122213649 122213649 C T TMEM120B 3'UTR 0.11 TCGA-44-7670-01 12 123087242 123087242 C T KNTC1 Missense_Mutation p.H1594Y 0.20 deleterious(0) probably_damaging(0.988) TCGA-44-7670-01 12 124398903 124398903 G T DNAH10 Missense_Mutation p.M3342I 0.43 benign(0.001) TCGA-44-7670-01 12 124827678 124827678 G A NCOR2 Silent p.H1603H 0.26 TCGA-44-7670-01 12 124934381 124934381 C A NCOR2 Missense_Mutation p.Q265H 0.21 unknown(0) TCGA-44-7670-01 12 125473463 125473463 C A DHX37 Missense_Mutation p.D36Y 0.26 deleterious(0.02) benign(0.001) TCGA-44-7670-01 12 130648391 130648391 G T FZD10 Nonsense_Mutation p.E302* 0.42 TCGA-44-7670-01 12 130935883 130935883 G T RIMBP2 Missense_Mutation p.Q104K 0.30 tolerated(0.91) benign(0.002) TCGA-44-7670-01 12 13208570 13208570 G A KIAA1467 Silent p.L41L 0.28 TCGA-44-7670-01 12 13211385 13211386 - T KIAA1467 Frame_Shift_Ins p.G146Wfs*10 0.23 TCGA-44-7670-01 12 132249067 132249067 A T SFSWAP Missense_Mutation p.N596I 0.07 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 12 133312078 133312078 G C ANKLE2 Silent p.L538L 0.30 TCGA-44-7670-01 12 133373220 133373220 C A GOLGA3 Missense_Mutation p.D669Y 0.31 deleterious(0.01) possibly_damaging(0.868) TCGA-44-7670-01 12 13720177 13720178 CT G GRIN2B Frame_Shift_Del p.E793Dfs*17 0.31 TCGA-44-7670-01 12 18650569 18650569 G T PIK3C2G Missense_Mutation p.R927L 0.34 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 12 20807013 20807013 G A PDE3A Missense_Mutation p.G1020R 0.27 deleterious(0.01) probably_damaging(0.985) TCGA-44-7670-01 12 24736982 24736982 G C LINC00477 RNA 0.26 TCGA-44-7670-01 12 27787932 27787932 G T PPFIBP1 Missense_Mutation p.V52L 0.32 tolerated(1) probably_damaging(0.959) TCGA-44-7670-01 12 27908184 27908184 C T MRPS35 Missense_Mutation p.S258L 0.15 deleterious(0) probably_damaging(1) TCGA-44-7670-01 12 40697792 40697792 A T LRRK2 Silent p.L1211L 0.43 TCGA-44-7670-01 12 41585260 41585260 G C PDZRN4 Missense_Mutation p.D217H 0.15 tolerated_low_confidence(0.06) benign(0.135) TCGA-44-7670-01 12 43777690 43777690 G C ADAMTS20 Missense_Mutation p.Q1515E 0.33 tolerated(1) benign(0.089) TCGA-44-7670-01 12 43945646 43945646 G C ADAMTS20 Missense_Mutation p.H27D 0.44 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 12 44913879 44913879 G T NELL2 Missense_Mutation p.T820N 0.15 tolerated(0.2) possibly_damaging(0.697) TCGA-44-7670-01 12 4543359 4543359 G T FGF6 3'UTR 0.30 TCGA-44-7670-01 12 4657984 4657984 G C RAD51AP1 Missense_Mutation p.E197Q 0.43 deleterious(0.01) probably_damaging(0.923) TCGA-44-7670-01 12 48377872 48377872 C G COL2A1 Missense_Mutation p.A647P 0.29 possibly_damaging(0.721) TCGA-44-7670-01 12 4873214 4873214 G C GALNT8 Splice_Site p.X531_splice 0.16 TCGA-44-7670-01 12 49361734 49361734 G T WNT10B Missense_Mutation p.R236S 0.36 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 12 49361936 49361936 G T WNT10B Silent p.S168S 0.36 TCGA-44-7670-01 12 49390588 49390588 C G DDN Missense_Mutation p.E691Q 0.11 tolerated_low_confidence(0.06) benign(0.033) TCGA-44-7670-01 12 49390664 49390664 A C DDN Missense_Mutation p.S665R 0.07 tolerated_low_confidence(0.53) benign(0.001) TCGA-44-7670-01 12 49937805 49937805 G A KCNH3 Missense_Mutation p.V311I 0.30 deleterious(0) benign(0.102) TCGA-44-7670-01 12 50528463 50528463 C G CERS5 Missense_Mutation p.E299Q 0.26 deleterious(0.03) possibly_damaging(0.864) TCGA-44-7670-01 12 51584375 51584375 C A POU6F1 Silent p.R187R 0.46 TCGA-44-7670-01 12 52201157 52201157 G A SCN8A Missense_Mutation p.E1963K 0.29 tolerated_low_confidence(1) benign(0.017) TCGA-44-7670-01 12 52309904 52309904 C A ACVRL1 Missense_Mutation p.P378H 0.39 deleterious(0) probably_damaging(1) TCGA-44-7670-01 12 52761190 52761190 C T KRT85 5'UTR 0.22 TCGA-44-7670-01 12 52777468 52777468 G A KRT84 Silent p.L221L 0.36 TCGA-44-7670-01 12 52799947 52799947 G T KRT82 Silent p.R39R 0.36 TCGA-44-7670-01 12 52845630 52845630 G C KRT6B Missense_Mutation p.A78G 0.22 tolerated(0.69) unknown(0) TCGA-44-7670-01 12 52862827 52862827 G A KRT6C 3'UTR 0.21 TCGA-44-7670-01 12 52985332 52985332 G C KRT72 Missense_Mutation p.D293E 0.38 deleterious(0.03) possibly_damaging(0.9) TCGA-44-7670-01 12 53217717 53217717 C A KRT79 Missense_Mutation p.R367L 0.34 deleterious(0.01) probably_damaging(0.992) TCGA-44-7670-01 12 53232816 53232816 G T KRT78 3'UTR 0.44 TCGA-44-7670-01 12 547537 547537 C T CCDC77 Silent p.T286T 0.39 TCGA-44-7670-01 12 54929927 54929927 G T NCKAP1L Nonsense_Mutation p.E991* 0.40 TCGA-44-7670-01 12 55523708 55523708 C A OR9K2 Silent p.L52L 0.39 TCGA-44-7670-01 12 56096669 56096669 C A ITGA7 Missense_Mutation p.G134V 0.33 deleterious(0) benign(0.422) TCGA-44-7670-01 12 56531325 56531325 G A ESYT1 Missense_Mutation p.A671T 0.19 deleterious(0.03) possibly_damaging(0.875) TCGA-44-7670-01 12 56748643 56748643 C T STAT2 Silent p.K184K 0.12 TCGA-44-7670-01 12 56750051 56750051 C A STAT2 Silent p.G50G 0.30 TCGA-44-7670-01 12 56750052 56750052 C A STAT2 Missense_Mutation p.G50V 0.30 deleterious(0.04) benign(0.013) TCGA-44-7670-01 12 57858453 57858453 C A GLI1 Intron 0.42 TCGA-44-7670-01 12 57961342 57961342 G A KIF5A Missense_Mutation p.E219K 0.12 deleterious(0.02) benign(0.142) TCGA-44-7670-01 12 58018936 58018936 G A SLC26A10 Missense_Mutation p.A459T 0.30 tolerated(0.68) benign(0.008) TCGA-44-7670-01 12 58122083 58122083 C G AGAP2-AS1 3'UTR 0.44 TCGA-44-7670-01 12 62261137 62261137 A T FAM19A2 Missense_Mutation p.W24R 0.39 deleterious(0.02) benign(0.374) TCGA-44-7670-01 12 64536509 64536509 G T SRGAP1 3'UTR 0.19 TCGA-44-7670-01 12 67696315 67696315 A T CAND1 Missense_Mutation p.T405S 0.72 tolerated(0.07) possibly_damaging(0.851) TCGA-44-7670-01 12 6953059 6953059 G T GNB3 Missense_Mutation p.A206S 0.38 tolerated(0.28) benign(0.159) TCGA-44-7670-01 12 69991453 69991453 C G CCT2 Missense_Mutation p.Q380E 0.18 tolerated(1) benign(0.003) TCGA-44-7670-01 12 72013875 72013875 G A ZFC3H1 Missense_Mutation p.S1627F 0.77 tolerated(0.05) benign(0.282) TCGA-44-7670-01 12 72771835 72771835 A G TRHDE Missense_Mutation p.I372V 0.37 tolerated(0.84) possibly_damaging(0.834) TCGA-44-7670-01 12 75601717 75601717 C A KCNC2 Missense_Mutation p.G16V 0.33 deleterious(0) probably_damaging(0.989) TCGA-44-7670-01 12 7640054 7640054 G A CD163 Missense_Mutation p.H651Y 0.15 tolerated(0.06) benign(0.074) TCGA-44-7670-01 12 77421733 77421733 C A E2F7 Missense_Mutation p.K690N 0.65 deleterious(0.02) benign(0.393) TCGA-44-7670-01 12 77449844 77449844 A C E2F7 Missense_Mutation p.L54V 0.39 tolerated(0.14) probably_damaging(0.997) TCGA-44-7670-01 12 78522533 78522533 G T NAV3 Missense_Mutation p.W1443L 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-44-7670-01 12 78579401 78579401 G T NAV3 Missense_Mutation p.G1883C 0.59 tolerated(0.17) benign(0.428) TCGA-44-7670-01 12 81239540 81239540 C - LIN7A Frame_Shift_Del p.R151Kfs*8 0.35 TCGA-44-7670-01 12 8290980 8290980 G T CLEC4A 3'UTR 0.24 TCGA-44-7670-01 12 85260945 85260945 A T SLC6A15 Missense_Mutation p.I508N 0.68 deleterious(0) possibly_damaging(0.502) TCGA-44-7670-01 12 85285772 85285772 C T SLC6A15 Missense_Mutation p.G43D 0.34 tolerated(0.23) benign(0) TCGA-44-7670-01 12 85521787 85521787 G T LRRIQ1 Missense_Mutation p.R1395S 0.25 deleterious(0) possibly_damaging(0.642) TCGA-44-7670-01 12 91539803 91539803 C - DCN 3'UTR 0.30 TCGA-44-7670-01 13 110859048 110859048 G A COL4A1 Silent p.V274V 0.31 TCGA-44-7670-01 13 21557801 21557801 C A LATS2 Missense_Mutation p.V682L 0.49 deleterious(0) probably_damaging(0.997) TCGA-44-7670-01 13 23909383 23909383 C A SACS Missense_Mutation p.G2878W 0.18 probably_damaging(1) TCGA-44-7670-01 13 24190104 24190104 G T TNFRSF19 Silent p.L93L 0.62 TCGA-44-7670-01 13 25009604 25009605 - A PARP4 Frame_Shift_Ins p.L1225Ffs*5 0.15 TCGA-44-7670-01 13 29252222 29252222 A G POMP Missense_Mutation p.K137E 0.60 deleterious(0.01) probably_damaging(0.938) TCGA-44-7670-01 13 32936676 32936676 C T BRCA2 Missense_Mutation p.P2608S 0.55 deleterious(0) probably_damaging(1) TCGA-44-7670-01 13 36748981 36748981 G T SOHLH2 Missense_Mutation p.Q300K 0.55 deleterious(0.01) probably_damaging(0.977) TCGA-44-7670-01 13 41515310 41515310 G A ELF1 Missense_Mutation p.P335S 0.13 tolerated(0.42) benign(0.001) TCGA-44-7670-01 13 49710605 49710605 A - FNDC3A Frame_Shift_Del p.K210Nfs*13 0.39 TCGA-44-7670-01 13 52513223 52513223 C A ATP7B Silent p.G1221G 0.61 TCGA-44-7670-01 13 70293684 70293684 C A KLHL1 Missense_Mutation p.S611I 0.60 deleterious(0.01) probably_damaging(0.976) TCGA-44-7670-01 13 73636638 73636638 C T KLF5 Missense_Mutation p.P301S 0.63 deleterious(0) probably_damaging(0.968) TCGA-44-7670-01 13 77642954 77642954 T C MYCBP2 Missense_Mutation p.I3935V 0.24 possibly_damaging(0.74) TCGA-44-7670-01 13 77671869 77671869 G C MYCBP2 Silent p.T3102T 0.19 TCGA-44-7670-01 13 84455420 84455420 G C SLITRK1 Missense_Mutation p.P75A 0.55 tolerated(0.24) benign(0.074) TCGA-44-7670-01 14 101439954 101439954 G T SNORD114-16 RNA 0.26 TCGA-44-7670-01 14 101512838 101512838 G C MIR487B RNA 0.15 TCGA-44-7670-01 14 106321610 106321610 C T IGHM Silent p.Q208Q 0.71 TCGA-44-7670-01 14 106405775 106405775 G T IGHV6-1 Missense_Mutation p.L67I 0.32 deleterious(0.01) possibly_damaging(0.858) TCGA-44-7670-01 14 106815935 106815935 G A IGHV3-33 Silent p.F46F 0.20 TCGA-44-7670-01 14 106963107 106963107 C A IGHV1-45 Missense_Mutation p.A59S 0.08 tolerated(0.25) benign(0.063) TCGA-44-7670-01 14 106967442 106967442 G T IGHV1-46 Missense_Mutation p.P15T 0.57 tolerated(1) benign(0.001) TCGA-44-7670-01 14 107034733 107034733 G T IGHV5-51 Missense_Mutation p.A116E 0.19 deleterious(0.02) possibly_damaging(0.823) TCGA-44-7670-01 14 107282904 107282904 G T IGHV7-81 Missense_Mutation p.A80D 0.10 deleterious(0.02) probably_damaging(0.949) TCGA-44-7670-01 14 19553759 19553759 A T POTEG Missense_Mutation p.S115C 0.06 deleterious(0) probably_damaging(0.947) TCGA-44-7670-01 14 20345054 20345054 T A OR4K2 Missense_Mutation p.C210S 0.13 tolerated(0.71) benign(0.122) TCGA-44-7670-01 14 20586176 20586176 T G OR4K17 Missense_Mutation p.V204G 0.34 tolerated(0.16) possibly_damaging(0.66) TCGA-44-7670-01 14 20586177 20586177 G T OR4K17 Silent p.V204V 0.37 TCGA-44-7670-01 14 20666392 20666392 C A OR11G2 Missense_Mutation p.P300T 0.34 deleterious(0) probably_damaging(0.939) TCGA-44-7670-01 14 21423997 21423997 G T RNASE2 Missense_Mutation p.G23C 0.24 tolerated(0.1) benign(0.028) TCGA-44-7670-01 14 21490241 21490241 T A NDRG2 Silent p.G108G 0.18 TCGA-44-7670-01 14 21490242 21490242 C A NDRG2 Missense_Mutation p.G108V 0.18 deleterious(0) probably_damaging(1) TCGA-44-7670-01 14 23793585 23793585 C G PABPN1 Intron 0.74 TCGA-44-7670-01 14 23855649 23855649 C T MYH6 Missense_Mutation p.E1612K 0.50 deleterious(0.01) probably_damaging(0.963) TCGA-44-7670-01 14 24041027 24041027 G T JPH4 Silent p.P418P 0.51 TCGA-44-7670-01 14 24614455 24614455 C A PSME2 Nonsense_Mutation p.E87* 0.17 TCGA-44-7670-01 14 24775613 24775613 C T CIDEB Silent p.V101V 0.14 TCGA-44-7670-01 14 24901093 24901093 G C KHNYN Missense_Mutation p.W209S 0.24 tolerated(0.39) benign(0.023) TCGA-44-7670-01 14 25042850 25042850 G C CTSG Missense_Mutation p.P254R 0.51 deleterious(0.01) possibly_damaging(0.708) TCGA-44-7670-01 14 25042851 25042851 G T CTSG Missense_Mutation p.P254T 0.22 tolerated(0.13) possibly_damaging(0.461) TCGA-44-7670-01 14 30068940 30068940 A T PRKD1 Missense_Mutation p.H663Q 0.10 deleterious(0.05) possibly_damaging(0.566) TCGA-44-7670-01 14 31602763 31602763 C G HECTD1 Missense_Mutation p.G1233R 0.10 deleterious(0) probably_damaging(1) TCGA-44-7670-01 14 33068651 33068651 C G AKAP6 Silent p.L835L 0.26 TCGA-44-7670-01 14 35478009 35478009 A T SRP54 Missense_Mutation p.T153S 0.64 deleterious(0.04) benign(0.11) TCGA-44-7670-01 14 35585916 35585916 T G PPP2R3C Missense_Mutation p.D29A 0.13 tolerated(0.35) benign(0.002) TCGA-44-7670-01 14 36159114 36159114 C A RALGAPA1 Nonsense_Mutation p.E788* 0.80 TCGA-44-7670-01 14 38724207 38724207 T A CLEC14A Missense_Mutation p.T341S 0.12 tolerated(0.1) possibly_damaging(0.535) TCGA-44-7670-01 14 39644496 39644496 G T PNN Missense_Mutation p.V5L 0.77 deleterious(0.04) probably_damaging(0.996) TCGA-44-7670-01 14 47530713 47530713 G T MDGA2 Missense_Mutation p.R422S 0.24 tolerated(0.12) probably_damaging(0.999) TCGA-44-7670-01 14 51383714 51383714 C A PYGL Missense_Mutation p.G322V 0.19 tolerated(0.18) benign(0.018) TCGA-44-7670-01 14 52907281 52907281 C A TXNDC16 Splice_Site p.X668_splice 0.18 TCGA-44-7670-01 14 57083899 57083899 A T TMEM260 Splice_Site p.X314_splice 0.16 TCGA-44-7670-01 14 57083900 57083900 G A TMEM260 Splice_Site p.X314_splice 0.18 TCGA-44-7670-01 14 60076858 60076858 C A RTN1 Intron 0.30 TCGA-44-7670-01 14 61920037 61920037 T G PRKCH Missense_Mutation p.M309R 0.11 deleterious(0.04) probably_damaging(0.909) TCGA-44-7670-01 14 63417143 63417143 C T KCNH5 Silent p.V359V 0.25 TCGA-44-7670-01 14 65198849 65198849 C T PLEKHG3 Missense_Mutation p.H332Y 0.24 deleterious(0) benign(0.237) TCGA-44-7670-01 14 67664975 67664975 T G FAM71D Missense_Mutation p.L33V 0.20 deleterious(0.02) possibly_damaging(0.878) TCGA-44-7670-01 14 70515701 70515701 G T SLC8A3 Nonsense_Mutation p.Y730* 0.27 TCGA-44-7670-01 14 72190593 72190593 G A SIPA1L1 Missense_Mutation p.D1501N 0.13 tolerated(0.13) probably_damaging(0.98) TCGA-44-7670-01 14 75019645 75019645 A C LTBP2 Missense_Mutation p.L381R 0.30 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 14 76965096 76965096 G T ESRRB Intron 0.39 TCGA-44-7670-01 14 77292999 77292999 T A C14orf166B Intron 0.46 TCGA-44-7670-01 14 77294801 77294801 C A C14orf166B Intron 0.30 TCGA-44-7670-01 14 79933641 79933641 C A NRXN3 Silent p.R741R 0.40 TCGA-44-7670-01 14 81610378 81610378 C A TSHR Missense_Mutation p.S659Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 14 89029992 89029992 C G ZC3H14 Intron 0.36 TCGA-44-7670-01 14 94044226 94044226 C A UNC79 Missense_Mutation p.H573Q 0.17 tolerated(0.13) benign(0.134) TCGA-44-7670-01 14 94395378 94395378 C A FAM181A Silent p.P311P 0.32 TCGA-44-7670-01 14 94931119 94931119 C T SERPINA9 Missense_Mutation p.M343I 0.24 deleterious(0.01) benign(0.251) TCGA-44-7670-01 14 94953696 94953696 C G SERPINA12 Missense_Mutation p.E397Q 0.14 tolerated(0.06) benign(0.012) TCGA-44-7670-01 14 94964309 94964309 C A SERPINA12 Missense_Mutation p.Q142H 0.40 tolerated(0.13) benign(0.015) TCGA-44-7670-01 14 95029947 95029947 G A SERPINA4 Missense_Mutation p.G43D 0.30 tolerated(0.27) benign(0.042) TCGA-44-7670-01 14 96152899 96152899 G T TCL1B Missense_Mutation p.W32L 0.51 deleterious(0.01) possibly_damaging(0.825) TCGA-44-7670-01 15 22368785 22368785 T C OR4M2 Silent p.D70D 0.17 TCGA-44-7670-01 15 24921181 24921181 G T NPAP1 Missense_Mutation p.R56L 0.48 tolerated(0.49) benign(0.433) TCGA-44-7670-01 15 25339252 25339252 G T SNORD116-24 RNA 0.19 TCGA-44-7670-01 15 33878306 33878306 C A RYR3 Silent p.R593R 0.58 TCGA-44-7670-01 15 34078113 34078113 G C RYR3 Silent p.L3173L 0.19 TCGA-44-7670-01 15 40675101 40675101 G A KNSTRN Missense_Mutation p.C22Y 0.24 tolerated_low_confidence(1) benign(0.002) TCGA-44-7670-01 15 40917839 40917839 G T CASC5 Splice_Site p.X1818_splice 0.50 TCGA-44-7670-01 15 41046915 41046915 C G RMDN3 Missense_Mutation p.G23R 0.40 deleterious(0) possibly_damaging(0.491) TCGA-44-7670-01 15 41058022 41058022 C T GCHFR Intron 0.19 TCGA-44-7670-01 15 41961546 41961547 - T MGA Frame_Shift_Ins p.L153Ffs*26 0.42 TCGA-44-7670-01 15 44058156 44058156 A T PDIA3 Missense_Mutation p.Y264F 0.64 tolerated(0.13) possibly_damaging(0.614) TCGA-44-7670-01 15 45003690 45003690 A C B2M 5'UTR 0.17 TCGA-44-7670-01 15 48434470 48434471 - A SLC24A5 Frame_Shift_Ins p.L476Ifs*11 0.44 TCGA-44-7670-01 15 52017075 52017075 C A LYSMD2 Nonsense_Mutation p.E173* 0.33 TCGA-44-7670-01 15 75115996 75115996 C A LMAN1L Silent p.L432L 0.48 TCGA-44-7670-01 15 78577629 78577629 G A WDR61 Missense_Mutation p.H268Y 0.33 deleterious(0.03) possibly_damaging(0.546) TCGA-44-7670-01 15 81517848 81517848 C A IL16 Missense_Mutation p.S36R 0.51 tolerated(0.06) probably_damaging(0.999) TCGA-44-7670-01 15 82336839 82336839 C T MEX3B Silent p.R124R 0.24 TCGA-44-7670-01 15 84582127 84582127 G T ADAMTSL3 Nonsense_Mutation p.G662* 0.50 TCGA-44-7670-01 15 84611388 84611388 G T ADAMTSL3 Nonsense_Mutation p.G720* 0.57 TCGA-44-7670-01 15 84659891 84659891 C A ADAMTSL3 Missense_Mutation p.H1300N 0.29 tolerated(0.61) benign(0.002) TCGA-44-7670-01 15 88679765 88679765 C A NTRK3 Missense_Mutation p.G233V 0.77 tolerated(1) possibly_damaging(0.678) TCGA-44-7670-01 16 12492348 12492348 G T SNX29 Missense_Mutation p.D649Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 16 15797965 15797965 G T MYH11 Silent p.T1941T 0.34 TCGA-44-7670-01 16 16297269 16297269 G A ABCC6 Silent p.L332L 0.26 TCGA-44-7670-01 16 1636199 1636199 C A IFT140 Missense_Mutation p.A363S 0.27 tolerated(0.76) benign(0.003) TCGA-44-7670-01 16 20435317 20435317 T A ACSM5 Missense_Mutation p.F283I 0.13 tolerated(0.08) possibly_damaging(0.58) TCGA-44-7670-01 16 21033322 21033322 G C DNAH3 Nonsense_Mutation p.S1916* 0.20 TCGA-44-7670-01 16 21098179 21098179 G T DNAH3 Missense_Mutation p.H956Q 0.48 deleterious(0) probably_damaging(1) TCGA-44-7670-01 16 22256000 22256000 G T EEF2K Missense_Mutation p.W99L 0.44 deleterious(0) probably_damaging(0.98) TCGA-44-7670-01 16 2334802 2334802 C T ABCA3 Missense_Mutation p.M1227I 0.33 tolerated(0.87) benign(0.001) TCGA-44-7670-01 16 23718359 23718359 G C ERN2 Silent p.P164P 0.16 TCGA-44-7670-01 16 2489405 2489405 C T CCNF Nonsense_Mutation p.Q216* 0.38 TCGA-44-7670-01 16 27455949 27455949 G A IL21R Silent p.L198L 0.56 TCGA-44-7670-01 16 27751537 27751537 G T KIAA0556 Missense_Mutation p.S640I 0.49 tolerated(0.08) possibly_damaging(0.745) TCGA-44-7670-01 16 28880417 28880417 G T SH2B1 Nonsense_Mutation p.G378* 0.50 TCGA-44-7670-01 16 28993752 28993752 C G SPNS1 Silent p.L347L 0.26 TCGA-44-7670-01 16 2906129 2906129 G C PRSS22 Missense_Mutation p.L79V 0.24 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 16 2980841 2980841 G T FLYWCH1 Silent p.L251L 0.40 TCGA-44-7670-01 16 29996620 29996620 G T TAOK2 Missense_Mutation p.Q503H 0.27 deleterious(0.04) possibly_damaging(0.661) TCGA-44-7670-01 16 30666694 30666694 G C PRR14 Missense_Mutation p.E423Q 0.18 tolerated(0.05) possibly_damaging(0.557) TCGA-44-7670-01 16 30735460 30735460 T C SRCAP Missense_Mutation p.L1572P 0.52 possibly_damaging(0.766) TCGA-44-7670-01 16 30975431 30975431 G T SETD1A Missense_Mutation p.R219L 0.32 benign(0.112) TCGA-44-7670-01 16 30975533 30975533 G T SETD1A Missense_Mutation p.R253L 0.47 probably_damaging(0.982) TCGA-44-7670-01 16 31142400 31142400 T C KAT8 3'UTR 0.30 TCGA-44-7670-01 16 31374645 31374645 T A ITGAX Missense_Mutation p.Y554N 0.22 deleterious(0) probably_damaging(1) TCGA-44-7670-01 16 31499727 31499727 G C SLC5A2 Missense_Mutation p.E349Q 0.43 tolerated(0.13) probably_damaging(0.912) TCGA-44-7670-01 16 32890630 32890630 C A SLC6A10P RNA 0.46 TCGA-44-7670-01 16 33020907 33020907 G A IGHV3OR16-8 Silent p.L105L 0.21 TCGA-44-7670-01 16 3777847 3777847 C A CREBBP Missense_Mutation p.G2401W 0.36 unknown(0) TCGA-44-7670-01 16 48117505 48117505 C G ABCC12 3'UTR 0.36 TCGA-44-7670-01 16 48167679 48167679 C T ABCC12 Silent p.L349L 0.37 TCGA-44-7670-01 16 55886934 55886934 G C CES5A Missense_Mutation p.P407A 0.25 deleterious(0.01) possibly_damaging(0.844) TCGA-44-7670-01 16 55893496 55893496 C A CES5A Missense_Mutation p.G369V 0.24 deleterious(0) probably_damaging(0.993) TCGA-44-7670-01 16 56536584 56536584 C A BBS2 Splice_Site p.X314_splice 0.28 TCGA-44-7670-01 16 57017614 57017614 G A CETP 3'UTR 0.28 TCGA-44-7670-01 16 57104528 57104528 G C NLRC5 Silent p.L1555L 0.36 TCGA-44-7670-01 16 57765153 57765153 C T CCDC135 Nonsense_Mutation p.Q870* 0.36 TCGA-44-7670-01 16 61687943 61687943 C A CDH8 Missense_Mutation p.D657Y 0.29 deleterious(0) probably_damaging(0.922) TCGA-44-7670-01 16 68055793 68055793 C A DDX28 Missense_Mutation p.G438V 0.33 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 16 68055794 68055794 C A DDX28 Nonsense_Mutation p.G438* 0.32 TCGA-44-7670-01 16 68598371 68598371 G A ZFP90 Missense_Mutation p.A561T 0.30 tolerated(0.19) probably_damaging(0.993) TCGA-44-7670-01 16 70871670 70871670 G C HYDIN Missense_Mutation p.Q4389E 0.30 benign(0.002) TCGA-44-7670-01 16 71212912 71212912 G A HYDIN Silent p.P100P 0.24 TCGA-44-7670-01 16 74425527 74425527 T G NPIPB15 Missense_Mutation p.V294G 0.14 tolerated_low_confidence(0.08) probably_damaging(0.991) TCGA-44-7670-01 16 74455116 74455116 A C CLEC18B Missense_Mutation p.L18R 0.50 deleterious(0.02) possibly_damaging(0.641) TCGA-44-7670-01 16 75238010 75238010 G A CTRB2 3'UTR 0.18 TCGA-44-7670-01 16 75513075 75513075 G T CHST6 Missense_Mutation p.L218M 0.39 deleterious(0) probably_damaging(1) TCGA-44-7670-01 16 75668121 75668121 C A KARS Nonsense_Mutation p.E317* 0.36 TCGA-44-7670-01 16 75668151 75668151 C T KARS Missense_Mutation p.V307M 0.36 deleterious(0.02) benign(0.08) TCGA-44-7670-01 16 83065760 83065760 C A CDH13 Silent p.P148P 0.32 TCGA-44-7670-01 16 84050766 84050766 G A SLC38A8 Missense_Mutation p.P311L 0.40 deleterious(0) probably_damaging(0.997) TCGA-44-7670-01 16 84199407 84199407 G T DNAAF1 Missense_Mutation p.W294C 0.28 deleterious(0) probably_damaging(0.998) TCGA-44-7670-01 16 849016 849016 G A GNG13 Missense_Mutation p.A21V 0.22 tolerated(0.28) probably_damaging(0.983) TCGA-44-7670-01 16 86602192 86602192 C G FOXC2 Silent p.A417A 0.31 TCGA-44-7670-01 16 89967134 89967134 G T TCF25 Missense_Mutation p.C438F 0.50 tolerated(0.49) benign(0.001) TCGA-44-7670-01 17 10433043 10433043 T C MYH2 Silent p.T985T 0.15 TCGA-44-7670-01 17 11513774 11513774 T A DNAH9 Missense_Mutation p.Y226N 0.14 benign(0) TCGA-44-7670-01 17 15212006 15212006 A C TEKT3 Missense_Mutation p.L411V 0.15 deleterious(0) possibly_damaging(0.898) TCGA-44-7670-01 17 17062136 17062136 G T MPRIP Silent p.L622L 0.29 TCGA-44-7670-01 17 18110155 18110155 A T ALKBH5 Missense_Mutation p.E293V 0.27 deleterious(0.01) possibly_damaging(0.827) TCGA-44-7670-01 17 18205586 18205586 C T TOP3A Missense_Mutation p.R269K 0.16 tolerated(1) benign(0.002) TCGA-44-7670-01 17 19575133 19575133 A T ALDH3A2 Missense_Mutation p.N436I 0.62 deleterious(0.01) probably_damaging(0.935) TCGA-44-7670-01 17 21206509 21206509 G T MAP2K3 Silent p.L177L 0.35 TCGA-44-7670-01 17 21318690 21318690 C T KCNJ12 Silent p.I12I 0.21 TCGA-44-7670-01 17 25909746 25909746 G T KSR1 Missense_Mutation p.D62Y 0.30 deleterious(0.01) possibly_damaging(0.845) TCGA-44-7670-01 17 26907094 26907094 G T RP11-192H23.4 Silent p.T315T 0.36 TCGA-44-7670-01 17 26982305 26982305 C A SDF2 Missense_Mutation p.Q116H 0.19 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 17 33690515 33690515 G T SLFN11 Nonsense_Mutation p.Y104* 0.42 TCGA-44-7670-01 17 37818598 37818598 G T STARD3 Splice_Site p.X411_splice 0.19 TCGA-44-7670-01 17 38937451 38937451 G T KRT27 Missense_Mutation p.D172E 0.32 deleterious(0) probably_damaging(0.923) TCGA-44-7670-01 17 39383169 39383169 C A KRTAP9-2 Missense_Mutation p.P88H 0.46 deleterious(0) unknown(0) TCGA-44-7670-01 17 42857240 42857240 C G ADAM11 3'UTR 0.21 TCGA-44-7670-01 17 42953336 42953336 G A EFTUD2 Missense_Mutation p.R279C 0.20 deleterious(0.02) probably_damaging(0.967) TCGA-44-7670-01 17 43175843 43175843 G T NMT1 Missense_Mutation p.R269S 0.39 deleterious(0) probably_damaging(0.99) TCGA-44-7670-01 17 43213951 43213951 G T ACBD4 Missense_Mutation p.R58L 0.21 deleterious(0) possibly_damaging(0.846) TCGA-44-7670-01 17 4436619 4436619 G A SPNS2 Silent p.L390L 0.17 TCGA-44-7670-01 17 45560458 45560458 T C MRPL45P2 Splice_Site 0.38 TCGA-44-7670-01 17 46670529 46670529 C G HOXB5 Missense_Mutation p.Q172H 0.44 tolerated(0.15) benign(0.076) TCGA-44-7670-01 17 47297531 47297531 C T ABI3 Silent p.G215G 0.13 TCGA-44-7670-01 17 4836761 4836761 G A GP1BA Missense_Mutation p.D288N 0.28 tolerated(0.15) benign(0.381) TCGA-44-7670-01 17 48603308 48603308 G T MYCBPAP Missense_Mutation p.A660S 0.28 tolerated(1) benign(0.012) TCGA-44-7670-01 17 51902405 51902405 A T KIF2B Nonsense_Mutation p.K671* 0.17 TCGA-44-7670-01 17 56572926 56572926 C A MTMR4 Silent p.G859G 0.16 TCGA-44-7670-01 17 56586171 56586171 C T MTMR4 Missense_Mutation p.E109K 0.18 deleterious(0) possibly_damaging(0.902) TCGA-44-7670-01 17 60062082 60062082 G C MED13 Missense_Mutation p.S874C 0.12 tolerated(0.07) benign(0.002) TCGA-44-7670-01 17 67215830 67215830 C A ABCA10 Missense_Mutation p.G129V 0.27 tolerated(0.36) benign(0.043) TCGA-44-7670-01 17 72227059 72227059 G T TTYH2 Missense_Mutation p.S112I 0.32 deleterious(0.01) probably_damaging(1) TCGA-44-7670-01 17 72588184 72588184 G C C17orf77 5'UTR 0.20 TCGA-44-7670-01 17 7330190 7330190 C A C17orf74 Missense_Mutation p.P294T 0.56 tolerated(0.14) benign(0) TCGA-44-7670-01 17 7574017 7574017 C A TP53 Missense_Mutation p.R337L 0.48 deleterious(0.01) probably_damaging(0.914) TCGA-44-7670-01 17 76047273 76047273 G T TNRC6C Missense_Mutation p.W710C 0.53 deleterious(0) probably_damaging(1) TCGA-44-7670-01 17 78055541 78055541 A G CCDC40 Missense_Mutation p.R587G 0.24 tolerated(0.41) benign(0.065) TCGA-44-7670-01 17 78681641 78681641 G T RPTOR Missense_Mutation p.A117S 0.14 deleterious(0) probably_damaging(0.935) TCGA-44-7670-01 17 7942414 7942415 - G ALOX15B 5'UTR 0.42 TCGA-44-7670-01 17 80320452 80320452 C T TEX19 Silent p.T142T 0.26 TCGA-44-7670-01 18 19996204 19996204 C T CTAGE1 Missense_Mutation p.G524E 0.16 tolerated(0.12) benign(0.16) TCGA-44-7670-01 18 22807555 22807555 C A ZNF521 Missense_Mutation p.E109D 0.55 tolerated(0.29) probably_damaging(0.978) TCGA-44-7670-01 18 28667691 28667691 T A DSC2 Missense_Mutation p.N239I 0.31 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 18 28991352 28991352 C A DSG4 Missense_Mutation p.L785M 0.18 tolerated(0.22) benign(0.111) TCGA-44-7670-01 18 31319240 31319240 C A ASXL3 Missense_Mutation p.S624R 0.58 possibly_damaging(0.876) TCGA-44-7670-01 18 31326557 31326557 T C ASXL3 Nonstop_Mutation p.*2249Qext*17 0.23 TCGA-44-7670-01 18 32335943 32335943 G C DTNA Translation_Start_Site p.M1? 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.461) TCGA-44-7670-01 18 43796201 43796201 C G C18orf25 Missense_Mutation p.Q119E 0.37 benign(0.384) TCGA-44-7670-01 18 43820131 43820131 A G C18orf25 Silent p.L292L 0.47 TCGA-44-7670-01 18 47753781 47753781 G A CCDC11 Silent p.R505R 0.23 TCGA-44-7670-01 18 50976902 50976902 G T DCC Missense_Mutation p.G1088C 0.35 deleterious(0) probably_damaging(0.927) TCGA-44-7670-01 18 52896251 52896251 C T TCF4 Missense_Mutation p.R671Q 0.31 deleterious(0.03) probably_damaging(1) TCGA-44-7670-01 18 55024672 55024672 G T ST8SIA3 Missense_Mutation p.W277C 0.29 probably_damaging(0.979) TCGA-44-7670-01 18 56204009 56204009 A C ALPK2 Missense_Mutation p.V1137G 0.32 tolerated(0.29) benign(0.001) TCGA-44-7670-01 18 60036668 60036668 G T TNFRSF11A Missense_Mutation p.R506S 0.29 deleterious(0) possibly_damaging(0.798) TCGA-44-7670-01 18 60985850 60985850 T A BCL2 Missense_Mutation p.K17M 0.28 deleterious(0) probably_damaging(0.969) TCGA-44-7670-01 18 7017304 7017304 C A LAMA1 Silent p.V927V 0.15 TCGA-44-7670-01 18 7034485 7034485 G T LAMA1 Missense_Mutation p.L682I 0.85 tolerated(1) benign(0.081) TCGA-44-7670-01 18 72173175 72173175 A G CNDP2 Missense_Mutation p.H99R 0.23 deleterious(0) probably_damaging(0.991) TCGA-44-7670-01 18 72344865 72344865 G T ZNF407 Silent p.V630V 0.27 TCGA-44-7670-01 19 10132014 10132014 G A RDH8 Missense_Mutation p.G227D 0.71 tolerated(0.17) benign(0.02) TCGA-44-7670-01 19 10222349 10222349 G T P2RY11 5'UTR 0.73 TCGA-44-7670-01 19 10625538 10625538 G A S1PR5 Silent p.I50I 0.62 TCGA-44-7670-01 19 11363464 11363464 C A DOCK6 Missense_Mutation p.K101N 0.74 deleterious(0.04) benign(0.016) TCGA-44-7670-01 19 11486600 11486600 C T SWSAP1 Nonsense_Mutation p.R200* 0.28 TCGA-44-7670-01 19 11597835 11597835 G A ZNF653 Missense_Mutation p.A437V 0.36 tolerated(0.15) benign(0.164) TCGA-44-7670-01 19 12222283 12222283 A T ZNF788 5'UTR 0.26 TCGA-44-7670-01 19 17688833 17688833 C G COLGALT1 Missense_Mutation p.H401D 0.53 tolerated(0.66) possibly_damaging(0.83) TCGA-44-7670-01 19 1795942 1795942 C G ATP8B3 Missense_Mutation p.D663H 0.63 deleterious(0) probably_damaging(1) TCGA-44-7670-01 19 23545248 23545248 C T ZNF91 Missense_Mutation p.G178E 0.68 tolerated(0.28) benign(0.001) TCGA-44-7670-01 19 23837472 23837472 T A ZNF675 Missense_Mutation p.E88V 0.28 tolerated(0.15) probably_damaging(0.95) TCGA-44-7670-01 19 29215121 29215121 A T AC005307.3 RNA 0.24 TCGA-44-7670-01 19 30934697 30934697 C A ZNF536 Silent p.P76P 0.28 TCGA-44-7670-01 19 30936096 30936096 C G ZNF536 Missense_Mutation p.P543A 0.34 tolerated(0.59) benign(0.031) TCGA-44-7670-01 19 31767730 31767730 G C TSHZ3 Missense_Mutation p.T990R 0.25 deleterious(0) probably_damaging(0.913) TCGA-44-7670-01 19 31769005 31769005 C G TSHZ3 Missense_Mutation p.G565A 0.36 tolerated(0.62) probably_damaging(0.999) TCGA-44-7670-01 19 33353074 33353074 C A SLC7A9 Silent p.V218V 0.23 TCGA-44-7670-01 19 36504245 36504245 C - ALKBH6 Splice_Site p.X46_splice 0.27 TCGA-44-7670-01 19 36673763 36673763 C A ZNF565 Missense_Mutation p.G369W 0.28 deleterious(0) probably_damaging(1) TCGA-44-7670-01 19 375944 375944 G T THEG Silent p.L9L 0.36 TCGA-44-7670-01 19 38189824 38189824 C A ZNF607 Missense_Mutation p.R403M 0.30 tolerated(0.14) benign(0.439) TCGA-44-7670-01 19 38910548 38910548 C T RASGRP4 Silent p.L205L 0.55 TCGA-44-7670-01 19 39600798 39600798 G T PAPL 3'UTR 0.39 TCGA-44-7670-01 19 40331129 40331129 G C FBL Missense_Mutation p.R70G 0.30 tolerated(0.4) benign(0.063) TCGA-44-7670-01 19 40395889 40395889 T C FCGBP Missense_Mutation p.N2503S 0.48 benign(0.037) TCGA-44-7670-01 19 40433917 40433917 C A FCGBP Missense_Mutation p.V118L 0.32 benign(0.028) TCGA-44-7670-01 19 41515938 41515938 C A CYP2B6 Missense_Mutation p.L288I 0.25 deleterious(0) probably_damaging(0.977) TCGA-44-7670-01 19 41774165 41774165 C A HNRNPUL1 Nonsense_Mutation p.Y111* 0.32 TCGA-44-7670-01 19 42510043 42510043 T G GRIK5 Missense_Mutation p.S699R 0.35 deleterious(0) probably_damaging(0.971) TCGA-44-7670-01 19 43585324 43585324 C T PSG2 Missense_Mutation p.E47K 0.28 deleterious(0.04) benign(0.03) TCGA-44-7670-01 19 43702187 43702187 C T PSG4 Missense_Mutation p.S224N 0.33 deleterious(0.01) benign(0.119) TCGA-44-7670-01 19 44223494 44223494 A G IRGC Missense_Mutation p.M262V 0.33 tolerated(0.31) possibly_damaging(0.591) TCGA-44-7670-01 19 44536757 44536757 G C ZNF222 Missense_Mutation p.Q350H 0.06 deleterious(0.01) benign(0.005) TCGA-44-7670-01 19 44679853 44679853 G T ZNF226 Missense_Mutation p.E146D 0.16 tolerated(0.16) benign(0.058) TCGA-44-7670-01 19 45655644 45655644 G T NKPD1 Missense_Mutation p.P684H 0.78 tolerated(0.25) benign(0.237) TCGA-44-7670-01 19 45683049 45683049 G T BLOC1S3 Silent p.G165G 0.67 TCGA-44-7670-01 19 45858052 45858052 C T ERCC2 Missense_Mutation p.G534D 0.61 deleterious(0) probably_damaging(0.992) TCGA-44-7670-01 19 46404961 46404961 T G MYPOP Missense_Mutation p.E24A 0.77 deleterious(0) possibly_damaging(0.61) TCGA-44-7670-01 19 48343050 48343050 G T CRX Silent p.V242V 0.34 TCGA-44-7670-01 19 49999709 49999709 G T RPS11 5'UTR 0.28 TCGA-44-7670-01 19 50387984 50387984 G T TBC1D17 Missense_Mutation p.R471S 0.35 deleterious(0.03) benign(0.201) TCGA-44-7670-01 19 50453299 50453299 T A SIGLEC11 Silent p.T675T 0.30 TCGA-44-7670-01 19 537015 537015 C T CDC34 Missense_Mutation p.T122I 0.31 deleterious(0) probably_damaging(0.986) TCGA-44-7670-01 19 53857102 53857102 G A ZNF845 3'UTR 0.39 TCGA-44-7670-01 19 54198477 54198477 C G MIR519B RNA 0.30 TCGA-44-7670-01 19 54215527 54215527 G T MIR517A RNA 0.33 TCGA-44-7670-01 19 54215528 54215528 G T MIR517A RNA 0.33 TCGA-44-7670-01 19 55105697 55105697 G T LILRA1 5'UTR 0.28 TCGA-44-7670-01 19 55107848 55107848 A T LILRA1 Missense_Mutation p.S385C 0.33 deleterious(0.01) probably_damaging(0.979) TCGA-44-7670-01 19 55653268 55653268 A T TNNT1 Nonsense_Mutation p.L50* 0.40 TCGA-44-7670-01 19 56329552 56329552 A T NLRP11 5'UTR 0.20 TCGA-44-7670-01 19 57640451 57640451 C A USP29 Missense_Mutation p.S136R 0.24 deleterious(0.05) benign(0) TCGA-44-7670-01 19 57640799 57640799 T C USP29 Silent p.N252N 0.17 TCGA-44-7670-01 19 57909965 57909965 G T ZNF548 Nonsense_Mutation p.G116* 0.34 TCGA-44-7670-01 19 57909966 57909966 G T ZNF548 Missense_Mutation p.G116V 0.35 deleterious(0.01) possibly_damaging(0.715) TCGA-44-7670-01 19 58153625 58153625 G C ZNF211 3'UTR 0.23 TCGA-44-7670-01 19 58371624 58371624 T C ZNF587 3'UTR 0.33 TCGA-44-7670-01 19 58563973 58563973 C A ZSCAN1 Missense_Mutation p.A194E 0.26 tolerated(0.08) benign(0.135) TCGA-44-7670-01 19 6773018 6773018 C A VAV1 Missense_Mutation p.S67Y 0.59 deleterious(0) probably_damaging(0.965) TCGA-44-7670-01 19 7083801 7083801 G C ZNF557 3'UTR 0.07 TCGA-44-7670-01 19 9059308 9059308 C A MUC16 Missense_Mutation p.G9380C 0.69 unknown(0) TCGA-44-7670-01 19 9082425 9082425 G T MUC16 Silent p.P3130P 0.31 TCGA-44-7670-01 1 100181217 100181217 C A FRRS1 Missense_Mutation p.M416I 0.26 tolerated(0.49) benign(0.005) TCGA-44-7670-01 1 101705131 101705131 C A S1PR1 Silent p.L197L 0.22 TCGA-44-7670-01 1 114226374 114226374 C G MAGI3 Missense_Mutation p.S1395C 0.50 tolerated_low_confidence(0.11) benign(0.006) TCGA-44-7670-01 1 116935553 116935553 G A ATP1A1 Missense_Mutation p.M470I 0.13 tolerated(0.56) benign(0.009) TCGA-44-7670-01 1 119427934 119427935 - A TBX15 Frame_Shift_Ins p.L304Ffs*9 0.12 TCGA-44-7670-01 1 120165431 120165431 C T ZNF697 Missense_Mutation p.R512H 0.47 deleterious(0.01) probably_damaging(0.997) TCGA-44-7670-01 1 120168739 120168740 - A ZNF697 5'UTR 0.09 TCGA-44-7670-01 1 1267812 1267812 G A TAS1R3 Missense_Mutation p.E301K 0.50 deleterious(0.01) probably_damaging(0.976) TCGA-44-7670-01 1 12885133 12885133 T A PRAMEF11 Missense_Mutation p.Q326H 0.11 tolerated(0.18) probably_damaging(0.999) TCGA-44-7670-01 1 12921424 12921424 C A PRAMEF2 Missense_Mutation p.S405R 0.30 tolerated(0.15) possibly_damaging(0.495) TCGA-44-7670-01 1 145531018 145531018 G T ITGA10 Missense_Mutation p.M250I 0.47 tolerated(0.18) benign(0.063) TCGA-44-7670-01 1 145532463 145532463 G T ITGA10 Missense_Mutation p.G306C 0.25 deleterious(0) probably_damaging(1) TCGA-44-7670-01 1 145586916 145586916 C T NUDT17 Missense_Mutation p.V258I 0.43 tolerated(0.17) benign(0.007) TCGA-44-7670-01 1 149921592 149921592 C G OTUD7B Missense_Mutation p.D355H 0.24 deleterious(0.04) probably_damaging(1) TCGA-44-7670-01 1 150249030 150249030 C G C1orf54 Missense_Mutation p.T97R 0.34 deleterious_low_confidence(0.04) benign(0.001) TCGA-44-7670-01 1 150789613 150789613 T C ARNT Silent p.L548L 0.27 TCGA-44-7670-01 1 150811989 150811989 G A ARNT Silent p.H138H 0.43 TCGA-44-7670-01 1 151682231 151682231 C T CELF3 Missense_Mutation p.E89K 0.19 deleterious(0) benign(0.02) TCGA-44-7670-01 1 152127334 152127334 G T RPTN Silent p.T747T 0.39 TCGA-44-7670-01 1 152191918 152191918 G T HRNR Missense_Mutation p.H729Q 0.36 unknown(0) TCGA-44-7670-01 1 152280800 152280800 T A FLG Missense_Mutation p.S2188C 0.12 possibly_damaging(0.7) TCGA-44-7670-01 1 152283963 152283963 C T FLG Silent p.R1133R 0.30 TCGA-44-7670-01 1 152287816 152287816 C G FLG Missense_Mutation p.K39N 0.17 possibly_damaging(0.757) TCGA-44-7670-01 1 152327631 152327631 G A FLG2 Silent p.S877S 0.40 TCGA-44-7670-01 1 152733784 152733784 G A KPRP Missense_Mutation p.A574T 0.19 tolerated_low_confidence(0.19) benign(0.024) TCGA-44-7670-01 1 152799984 152799984 C A LCE1A Silent p.P12P 0.27 TCGA-44-7670-01 1 153635230 153635230 G C ILF2 Silent p.L321L 0.20 TCGA-44-7670-01 1 153656220 153656220 C - NPR1 Frame_Shift_Del p.L469Ffs*19 0.26 TCGA-44-7670-01 1 155006533 155006533 G A DCST1 Silent p.Q7Q 0.15 TCGA-44-7670-01 1 156039504 156039507 CTAC - RAB25 Frame_Shift_Del p.T160Mfs*4 0.51 TCGA-44-7670-01 1 158059251 158059251 G T KIRREL Intron 0.41 TCGA-44-7670-01 1 158435542 158435542 C A OR10K1 Missense_Mutation p.A64D 0.21 tolerated(0.09) benign(0.342) TCGA-44-7670-01 1 158576318 158576318 G C OR10Z1 Missense_Mutation p.L30F 0.32 deleterious(0.04) benign(0.255) TCGA-44-7670-01 1 158576491 158576491 G T OR10Z1 Missense_Mutation p.G88V 0.31 tolerated(0.63) benign(0.015) TCGA-44-7670-01 1 158613134 158613134 G T SPTA1 Silent p.R1474R 0.23 TCGA-44-7670-01 1 158639227 158639227 T C SPTA1 Missense_Mutation p.K602E 0.12 tolerated(0.12) probably_damaging(0.994) TCGA-44-7670-01 1 159284388 159284388 C A OR10J3 Missense_Mutation p.R21M 0.31 tolerated(0.08) possibly_damaging(0.593) TCGA-44-7670-01 1 159778918 159778918 C A FCRL6 Missense_Mutation p.P163T 0.14 tolerated(0.11) benign(0.125) TCGA-44-7670-01 1 159850393 159850393 T A CCDC19 Missense_Mutation p.Q332L 0.46 tolerated(0.06) benign(0.12) TCGA-44-7670-01 1 15987376 15987376 G T RSC1A1 Missense_Mutation p.C338F 0.25 deleterious(0.04) possibly_damaging(0.861) TCGA-44-7670-01 1 160811650 160811650 C A CD244 Missense_Mutation p.V35L 0.45 tolerated(0.27) benign(0) TCGA-44-7670-01 1 161024251 161024251 G A ARHGAP30 Silent p.F147F 0.15 TCGA-44-7670-01 1 161024438 161024438 G A ARHGAP30 Missense_Mutation p.R135W 0.21 deleterious(0) probably_damaging(0.946) TCGA-44-7670-01 1 161645088 161645088 C A FCGR2B Missense_Mutation p.L268I 0.29 deleterious(0.02) possibly_damaging(0.871) TCGA-44-7670-01 1 161989783 161989783 G T OLFML2B Missense_Mutation p.P122T 0.30 deleterious(0) probably_damaging(0.963) TCGA-44-7670-01 1 167097504 167097504 C A DUSP27 Missense_Mutation p.P1046T 0.32 deleterious(0) probably_damaging(0.989) TCGA-44-7670-01 1 169492497 169492497 C A F5 Missense_Mutation p.A1996S 0.52 tolerated(0.29) benign(0.396) TCGA-44-7670-01 1 169529962 169529962 T A F5 Missense_Mutation p.D139V 0.35 deleterious(0) probably_damaging(1) TCGA-44-7670-01 1 169582879 169582879 G T SELP Silent p.I178I 0.28 TCGA-44-7670-01 1 169812836 169812836 C T C1orf112 Nonsense_Mutation p.Q624* 0.12 TCGA-44-7670-01 1 172539803 172539803 A T SUCO Missense_Mutation p.S328C 0.35 deleterious(0) probably_damaging(0.998) TCGA-44-7670-01 1 172579351 172579351 G T SUCO Missense_Mutation p.E1239D 0.31 tolerated(0.24) benign(0.032) TCGA-44-7670-01 1 175046639 175046639 G T TNN Nonsense_Mutation p.E29* 0.33 TCGA-44-7670-01 1 183189969 183189969 A G LAMC2 Silent p.S171S 0.21 TCGA-44-7670-01 1 183230436 183230436 C T NMNAT2 Missense_Mutation p.M218I 0.56 tolerated(1) benign(0.192) TCGA-44-7670-01 1 183546792 183546792 C A NCF2 Missense_Mutation p.G103V 0.13 deleterious(0) possibly_damaging(0.877) TCGA-44-7670-01 1 183546814 183546814 C T NCF2 Missense_Mutation p.E96K 0.15 tolerated(0.1) probably_damaging(0.913) TCGA-44-7670-01 1 184764460 184764460 C A FAM129A Missense_Mutation p.G813V 0.29 tolerated_low_confidence(0.28) benign(0.055) TCGA-44-7670-01 1 185068982 185068982 G A RNF2 Missense_Mutation p.R266K 0.26 deleterious(0.04) probably_damaging(0.948) TCGA-44-7670-01 1 185089601 185089601 C A TRMT1L Missense_Mutation p.K621N 0.22 deleterious(0) probably_damaging(1) TCGA-44-7670-01 1 185931747 185931747 G C HMCN1 Missense_Mutation p.K642N 0.14 probably_damaging(0.994) TCGA-44-7670-01 1 186276708 186276708 C A PRG4 Silent p.T619T 0.50 TCGA-44-7670-01 1 186277469 186277469 C A PRG4 Missense_Mutation p.P873H 0.45 unknown(0) TCGA-44-7670-01 1 186287706 186287706 C A TPR Missense_Mutation p.D2232Y 0.25 possibly_damaging(0.635) TCGA-44-7670-01 1 190067745 190067745 C A BRINP3 Silent p.V568V 0.45 TCGA-44-7670-01 1 19018324 19018324 G C PAX7 Silent p.R221R 0.37 TCGA-44-7670-01 1 19467338 19467338 T C UBR4 Missense_Mutation p.Q2846R 0.47 possibly_damaging(0.803) TCGA-44-7670-01 1 19511665 19511665 C A UBR4 Silent p.R622R 0.29 TCGA-44-7670-01 1 198675957 198675957 T C PTPRC Silent p.C260C 0.39 TCGA-44-7670-01 1 200012940 200012940 G C NR5A2 Missense_Mutation p.D81H 0.47 deleterious(0.01) possibly_damaging(0.687) TCGA-44-7670-01 1 201969078 201969078 G C RNPEP Missense_Mutation p.R380P 0.13 deleterious(0.01) possibly_damaging(0.869) TCGA-44-7670-01 1 203149636 203149636 G A CHI3L1 Missense_Mutation p.R286W 0.35 deleterious(0) benign(0.018) TCGA-44-7670-01 1 203149637 203149637 G T CHI3L1 Silent p.G285G 0.35 TCGA-44-7670-01 1 209796811 209796811 T C LAMB3 Intron 0.48 TCGA-44-7670-01 1 211307384 211307384 C T KCNH1 5'Flank 0.46 TCGA-44-7670-01 1 211307385 211307385 G T KCNH1 5'Flank 0.42 TCGA-44-7670-01 1 213415634 213415634 G C RPS6KC1 Missense_Mutation p.D939H 0.28 tolerated(0.35) probably_damaging(1) TCGA-44-7670-01 1 214170420 214170420 G T PROX1 Missense_Mutation p.S181I 0.44 tolerated(0.05) benign(0.211) TCGA-44-7670-01 1 214836933 214836933 G T CENPF Splice_Site p.X3048_splice 0.53 TCGA-44-7670-01 1 21605875 21605875 C A ECE1 Intron 0.58 TCGA-44-7670-01 1 216591863 216591863 C A USH2A Missense_Mutation p.S215I 0.28 possibly_damaging(0.703) TCGA-44-7670-01 1 22181236 22181236 C A HSPG2 Silent p.P2052P 0.21 TCGA-44-7670-01 1 223178307 223178307 G C DISP1 Missense_Mutation p.E1190Q 0.48 deleterious(0) probably_damaging(0.998) TCGA-44-7670-01 1 226175779 226175779 C A SDE2 Nonsense_Mutation p.E318* 0.25 TCGA-44-7670-01 1 226784513 226784513 C A C1orf95 Silent p.V71V 0.24 TCGA-44-7670-01 1 227504797 227504797 C A CDC42BPA Missense_Mutation p.E29D 0.29 tolerated(0.09) benign(0.146) TCGA-44-7670-01 1 228109639 228109639 C T WNT9A Silent p.V226V 0.14 TCGA-44-7670-01 1 231344799 231344799 C T TRIM67 Silent p.G642G 0.17 TCGA-44-7670-01 1 236205413 236205413 G A NID1 Missense_Mutation p.T311M 0.55 tolerated(0.08) benign(0.046) TCGA-44-7670-01 1 236306325 236306325 T A GPR137B Missense_Mutation p.Y135N 0.11 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 1 237796954 237796954 A - RYR2 Frame_Shift_Del p.A2213Lfs*22 0.19 TCGA-44-7670-01 1 237947958 237947958 G T RYR2 Nonsense_Mutation p.G4316* 0.36 TCGA-44-7670-01 1 240370183 240370183 G A FMN2 Missense_Mutation p.A691T 0.33 unknown(0) TCGA-44-7670-01 1 2435853 2435853 C A PLCH2 3'UTR 0.38 TCGA-44-7670-01 1 24484118 24484118 C G IFNLR1 Missense_Mutation p.Q355H 0.40 deleterious(0.01) possibly_damaging(0.711) TCGA-44-7670-01 1 247013073 247013073 C T AHCTF1 Missense_Mutation p.E2088K 0.27 tolerated(0.13) benign(0.002) TCGA-44-7670-01 1 247492105 247492105 C A ZNF496 Nonsense_Mutation p.E152* 0.16 TCGA-44-7670-01 1 247654766 247654766 G T OR2W5 RNA 0.54 TCGA-44-7670-01 1 247769203 247769203 G T OR2G3 Missense_Mutation p.A106S 0.25 tolerated(0.28) benign(0.019) TCGA-44-7670-01 1 248112897 248112897 A T OR2L8 Silent p.V246V 0.20 TCGA-44-7670-01 1 248366414 248366414 G T OR2M3 Silent p.L15L 0.22 TCGA-44-7670-01 1 248458257 248458257 G T OR2T12 Silent p.P208P 0.42 TCGA-44-7670-01 1 248512430 248512430 T A OR14C36 Missense_Mutation p.H118Q 0.45 tolerated(0.19) benign(0.009) TCGA-44-7670-01 1 248512455 248512455 C A OR14C36 Missense_Mutation p.P127T 0.45 deleterious(0) probably_damaging(0.931) TCGA-44-7670-01 1 248525105 248525105 G A OR2T4 Missense_Mutation p.A75T 0.08 tolerated(0.45) benign(0.013) TCGA-44-7670-01 1 248551323 248551323 G T OR2T6 Missense_Mutation p.W138C 0.44 tolerated(0.19) benign(0) TCGA-44-7670-01 1 248569867 248569867 G T OR2T1 Missense_Mutation p.C191F 0.56 deleterious(0.01) probably_damaging(1) TCGA-44-7670-01 1 248616317 248616317 C A OR2T2 Silent p.I73I 0.09 TCGA-44-7670-01 1 248685157 248685157 C T OR2G6 Silent p.D70D 0.17 TCGA-44-7670-01 1 248722654 248722654 C T OR2T29 Missense_Mutation p.A47T 0.09 tolerated(0.5) benign(0.005) TCGA-44-7670-01 1 248738019 248738019 T - OR2T34 Frame_Shift_Del p.S14Afs*22 0.13 TCGA-44-7670-01 1 248813466 248813466 G T OR2T27 Silent p.T240T 0.40 TCGA-44-7670-01 1 27087527 27087527 G T ARID1A Missense_Mutation p.G701C 0.41 unknown(0) TCGA-44-7670-01 1 27220829 27220829 T A GPATCH3 Missense_Mutation p.T317S 0.22 tolerated(0.15) benign(0.006) TCGA-44-7670-01 1 28861844 28861844 G T RCC1 Missense_Mutation p.G236C 0.27 deleterious(0) probably_damaging(1) TCGA-44-7670-01 1 29481229 29481229 G T SRSF4 Missense_Mutation p.S186Y 0.44 deleterious(0) possibly_damaging(0.608) TCGA-44-7670-01 1 32162668 32162668 C A COL16A1 Missense_Mutation p.A254S 0.24 unknown(0) TCGA-44-7670-01 1 34123566 34123566 G T CSMD2 Missense_Mutation p.P1436H 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-44-7670-01 1 34286079 34286079 G T CSMD2 Nonsense_Mutation p.S357* 0.29 TCGA-44-7670-01 1 35457958 35457958 G A ZMYM6 Missense_Mutation p.P675S 0.39 tolerated(0.71) benign(0.021) TCGA-44-7670-01 1 35852719 35852719 C T ZMYM4 Missense_Mutation p.S651F 0.36 tolerated(0.05) benign(0.059) TCGA-44-7670-01 1 36299636 36299636 G T AGO4 Missense_Mutation p.M475I 0.30 tolerated(0.1) benign(0.045) TCGA-44-7670-01 1 36354197 36354197 C T AGO1 Silent p.P65P 0.27 TCGA-44-7670-01 1 36563225 36563225 T C COL8A2 Missense_Mutation p.Y686C 0.25 deleterious(0) probably_damaging(1) TCGA-44-7670-01 1 36786094 36786094 G T SH3D21 Missense_Mutation p.R610S 0.29 tolerated_low_confidence(0.12) benign(0.003) TCGA-44-7670-01 1 36883734 36883734 G A OSCP1 3'UTR 0.29 TCGA-44-7670-01 1 38339795 38339795 C T INPP5B Silent p.L607L 0.22 TCGA-44-7670-01 1 38397563 38397563 T A INPP5B Intron 0.12 TCGA-44-7670-01 1 39317399 39317399 C A RRAGC Missense_Mutation p.D263Y 0.25 deleterious(0) probably_damaging(0.998) TCGA-44-7670-01 1 40702175 40702175 G T RLF Missense_Mutation p.V601L 0.32 deleterious(0.02) possibly_damaging(0.487) TCGA-44-7670-01 1 43200858 43200858 G T CLDN19 Intron 0.44 TCGA-44-7670-01 1 44071284 44071284 G T PTPRF Missense_Mutation p.E1158D 0.28 tolerated(1) benign(0.001) TCGA-44-7670-01 1 44128655 44128655 C A KDM4A Missense_Mutation p.P174T 0.28 deleterious(0) probably_damaging(0.983) TCGA-44-7670-01 1 47515979 47515979 A G CYP4X1 3'UTR 0.42 TCGA-44-7670-01 1 50666841 50666841 C A ELAVL4 Missense_Mutation p.H381Q 0.26 tolerated(0.11) benign(0.099) TCGA-44-7670-01 1 53279551 53279551 G T ZYG11B Missense_Mutation p.W638L 0.34 deleterious(0) probably_damaging(0.998) TCGA-44-7670-01 1 55067020 55067020 G T ACOT11 Missense_Mutation p.M321I 0.35 deleterious(0.03) benign(0.358) TCGA-44-7670-01 1 55136487 55136487 C T MROH7 Missense_Mutation p.T495I 0.27 tolerated(0.44) benign(0.002) TCGA-44-7670-01 1 55563650 55563650 C A USP24 Missense_Mutation p.S1854I 0.42 deleterious(0.01) probably_damaging(0.959) TCGA-44-7670-01 1 57254653 57254653 C A C1orf168 Missense_Mutation p.Q304H 0.27 tolerated(0.81) benign(0.002) TCGA-44-7670-01 1 57394944 57394944 T A C8B 3'UTR 0.33 TCGA-44-7670-01 1 57406634 57406634 C A C8B Missense_Mutation p.G429V 0.44 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 1 62732417 62732417 G T KANK4 Missense_Mutation p.T769K 0.34 tolerated(0.31) benign(0.001) TCGA-44-7670-01 1 63001286 63001286 C A DOCK7 Silent p.T1132T 0.38 TCGA-44-7670-01 1 65897696 65897696 G C LEPROT 3'UTR 0.50 TCGA-44-7670-01 1 67199493 67199493 C G SGIP1 Missense_Mutation p.T654S 0.34 tolerated(0.69) benign(0.141) TCGA-44-7670-01 1 67336991 67336991 G C WDR78 Intron 0.47 TCGA-44-7670-01 1 7527931 7527931 C T CAMTA1 Silent p.T160T 0.34 TCGA-44-7670-01 1 75740677 75740677 C A SLC44A5 Missense_Mutation p.G76C 0.59 deleterious(0) probably_damaging(0.995) TCGA-44-7670-01 1 77876672 77876672 G C AK5 Missense_Mutation p.A300P 0.09 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 1 79120772 79120773 - T IFI44 Frame_Shift_Ins p.L191Afs*33 0.25 TCGA-44-7670-01 1 82455387 82455387 G T LPHN2 Intron 0.28 TCGA-44-7670-01 1 8390674 8390674 A G SLC45A1 Missense_Mutation p.D374G 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-44-7670-01 1 86304278 86304278 T A COL24A1 Missense_Mutation p.E1224V 0.42 tolerated(0.06) probably_damaging(0.958) TCGA-44-7670-01 1 89834176 89834176 G T GBP6 Missense_Mutation p.L22F 0.27 tolerated(0.53) benign(0.255) TCGA-44-7670-01 1 91403085 91403085 C A ZNF644 Silent p.P1215P 0.29 TCGA-44-7670-01 1 92730115 92730115 A T GLMN Nonsense_Mutation p.L432* 0.19 TCGA-44-7670-01 1 97243152 97243152 A G PTBP2 Silent p.A148A 0.41 TCGA-44-7670-01 1 99470069 99470069 G T LPPR5 Silent p.P53P 0.21 TCGA-44-7670-01 1 99772228 99772228 C A LPPR4 Missense_Mutation p.P652T 0.29 tolerated(0.65) benign(0.2) TCGA-44-7670-01 20 126203 126203 C A DEFB126 Missense_Mutation p.P69H 0.36 deleterious(0) probably_damaging(0.953) TCGA-44-7670-01 20 17600359 17600359 C T RRBP1 Silent p.T765T 0.27 TCGA-44-7670-01 20 2375157 2375157 C A TGM6 Missense_Mutation p.Q23K 0.31 tolerated(0.07) benign(0.039) TCGA-44-7670-01 20 2375918 2375918 C G TGM6 Missense_Mutation p.A87G 0.20 deleterious(0) probably_damaging(0.975) TCGA-44-7670-01 20 23804722 23804722 G T CST2 Missense_Mutation p.Q121K 0.36 tolerated(0.28) benign(0.003) TCGA-44-7670-01 20 25457663 25457663 C T NINL Missense_Mutation p.R755K 0.27 tolerated(1) benign(0.005) TCGA-44-7670-01 20 3183950 3183950 C A DDRGK1 Missense_Mutation p.R68S 0.56 deleterious(0) probably_damaging(0.966) TCGA-44-7670-01 20 33722565 33722565 C A EDEM2 Missense_Mutation p.W226C 0.59 deleterious(0) probably_damaging(0.996) TCGA-44-7670-01 20 34827870 34827870 C A AAR2 Missense_Mutation p.P27H 0.51 deleterious(0) probably_damaging(1) TCGA-44-7670-01 20 36841559 36841559 G T KIAA1755 Missense_Mutation p.P1163H 0.50 tolerated(0.38) possibly_damaging(0.641) TCGA-44-7670-01 20 3804570 3804570 A G AP5S1 Missense_Mutation p.M77V 0.31 tolerated(0.59) benign(0) TCGA-44-7670-01 20 40710553 40710553 C T PTPRT Missense_Mutation p.R1414H 0.40 deleterious(0) probably_damaging(0.998) TCGA-44-7670-01 20 42679966 42679966 G T TOX2 Silent p.S144S 0.71 TCGA-44-7670-01 20 42680075 42680075 G T TOX2 Missense_Mutation p.G181C 0.13 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 20 43058302 43058302 C A HNF4A Silent p.I474I 0.18 TCGA-44-7670-01 20 43739107 43739107 C A WFDC5 Missense_Mutation p.D101Y 0.24 deleterious(0) probably_damaging(0.997) TCGA-44-7670-01 20 44527062 44527062 C T CTSA Silent p.S490S 0.10 TCGA-44-7670-01 20 44578493 44578493 C G ZNF335 Missense_Mutation p.E1205D 0.49 deleterious(0.01) possibly_damaging(0.776) TCGA-44-7670-01 20 45224895 45224895 T A SLC13A3 Missense_Mutation p.K232M 0.16 deleterious(0) probably_damaging(0.99) TCGA-44-7670-01 20 45717947 45717947 C A EYA2 Missense_Mutation p.A244D 0.38 tolerated(0.1) possibly_damaging(0.826) TCGA-44-7670-01 20 47989796 47989796 G T KCNB1 Silent p.L767L 0.48 TCGA-44-7670-01 20 48129705 48129705 C T PTGIS Missense_Mutation p.R373Q 0.26 tolerated(0.53) benign(0.049) TCGA-44-7670-01 20 48522819 48522819 G A SPATA2 Silent p.T300T 0.45 TCGA-44-7670-01 20 49208924 49208924 G A FAM65C Missense_Mutation p.A841V 0.29 tolerated(0.07) benign(0.007) TCGA-44-7670-01 20 49366697 49366697 G T PARD6B Missense_Mutation p.S264I 0.34 deleterious(0.02) possibly_damaging(0.512) TCGA-44-7670-01 20 50407075 50407075 C A SALL4 Missense_Mutation p.M649I 0.47 deleterious(0) probably_damaging(0.985) TCGA-44-7670-01 20 51871229 51871229 C A TSHZ2 Missense_Mutation p.S411Y 0.45 deleterious(0) probably_damaging(0.941) TCGA-44-7670-01 20 52193540 52193540 C A ZNF217 Missense_Mutation p.G588V 0.22 deleterious(0) possibly_damaging(0.894) TCGA-44-7670-01 20 56099195 56099195 G A CTCFL Missense_Mutation p.P23S 0.45 tolerated(0.12) benign(0.03) TCGA-44-7670-01 20 56099434 56099434 G T CTCFL Intron 0.38 TCGA-44-7670-01 20 56186853 56186853 G T ZBP1 Missense_Mutation p.H268Q 0.48 deleterious(0.02) probably_damaging(0.967) TCGA-44-7670-01 20 57429950 57429950 C T GNAS Missense_Mutation p.R544W 0.46 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-44-7670-01 20 57767204 57767204 G A ZNF831 Missense_Mutation p.G377D 0.20 deleterious(0.05) probably_damaging(0.928) TCGA-44-7670-01 20 57768774 57768774 G C ZNF831 Missense_Mutation p.R900S 0.33 tolerated(0.61) benign(0.062) TCGA-44-7670-01 20 57769036 57769036 C G ZNF831 Missense_Mutation p.L988V 0.24 tolerated(0.14) benign(0.378) TCGA-44-7670-01 20 58519167 58519167 A G FAM217B Missense_Mutation p.R57G 0.30 tolerated(0.08) benign(0.112) TCGA-44-7670-01 20 5922665 5922665 C A TRMT6 Missense_Mutation p.R348S 0.37 tolerated(0.68) benign(0.017) TCGA-44-7670-01 20 60448826 60448826 G T CDH4 Missense_Mutation p.S307I 0.38 tolerated(0.09) benign(0.009) TCGA-44-7670-01 20 6065747 6065747 G A FERMT1 Missense_Mutation p.S520L 0.35 deleterious(0) probably_damaging(0.973) TCGA-44-7670-01 20 60887362 60887363 GC - LAMA5 Frame_Shift_Del p.A3124Hfs*65 0.38 TCGA-44-7670-01 20 61937328 61937328 G T COL20A1 Missense_Mutation p.D145Y 0.45 deleterious(0.01) benign(0.17) TCGA-44-7670-01 20 61939938 61939938 G T COL20A1 Missense_Mutation p.A274S 0.24 tolerated(0.25) possibly_damaging(0.58) TCGA-44-7670-01 20 61945437 61945437 G T COL20A1 Missense_Mutation p.G791V 0.45 deleterious(0.04) probably_damaging(0.913) TCGA-44-7670-01 20 61945462 61945462 C A COL20A1 Silent p.P799P 0.26 TCGA-44-7670-01 20 7895047 7895048 - G HAO1 Frame_Shift_Ins p.M105Hfs*12 0.21 TCGA-44-7670-01 20 8665694 8665694 C G PLCB1 Missense_Mutation p.F326L 0.34 deleterious(0) benign(0.247) TCGA-44-7670-01 20 9402085 9402085 G T PLCB4 Nonsense_Mutation p.E754* 0.35 TCGA-44-7670-01 20 9510471 9510471 C A LAMP5 3'UTR 0.47 TCGA-44-7670-01 21 11038964 11038964 G T BAGE2 RNA 0.06 TCGA-44-7670-01 21 28209843 28209843 G T ADAMTS1 3'UTR 0.25 TCGA-44-7670-01 21 30959887 30959887 G A GRIK1 Missense_Mutation p.P531L 0.50 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 21 31768821 31768821 C A KRTAP13-1 Silent p.S139S 0.14 TCGA-44-7670-01 21 32119357 32119357 G T KRTAP21-2 Missense_Mutation p.S55Y 0.31 tolerated_low_confidence(0.73) unknown(0) TCGA-44-7670-01 21 32492884 32492884 C T TIAM1 Silent p.E1526E 0.34 TCGA-44-7670-01 21 35514757 35514757 G T MRPS6 Missense_Mutation p.V79L 0.39 tolerated(0.76) benign(0.001) TCGA-44-7670-01 21 38092173 38092173 G A SIM2 Missense_Mutation p.D134N 0.21 deleterious(0.04) probably_damaging(0.992) TCGA-44-7670-01 21 41684166 41684166 C A DSCAM Missense_Mutation p.R635L 0.16 deleterious(0.02) possibly_damaging(0.73) TCGA-44-7670-01 21 43411970 43411970 C T ZBTB21 Silent p.R745R 0.29 TCGA-44-7670-01 21 43412359 43412359 C T ZBTB21 Missense_Mutation p.E616K 0.27 deleterious(0.03) possibly_damaging(0.856) TCGA-44-7670-01 21 43413863 43413863 C G ZBTB21 Silent p.L114L 0.29 TCGA-44-7670-01 21 43767673 43767673 C T TFF2 Missense_Mutation p.E100K 0.39 tolerated(0.14) possibly_damaging(0.543) TCGA-44-7670-01 21 43771051 43771051 C T TFF2 Missense_Mutation p.A6T 0.36 tolerated(0.29) benign(0) TCGA-44-7670-01 21 46686287 46686287 C A POFUT2 Intron 0.35 TCGA-44-7670-01 21 47532214 47532214 G A COL6A2 Missense_Mutation p.R146Q 0.26 tolerated(0.65) benign(0.01) TCGA-44-7670-01 21 47636393 47636393 G T LSS Nonsense_Mutation p.C231* 0.16 TCGA-44-7670-01 21 47783821 47783821 G T PCNT Missense_Mutation p.A861S 0.31 possibly_damaging(0.84) TCGA-44-7670-01 22 16287925 16287925 G T POTEH 5'UTR 0.25 TCGA-44-7670-01 22 17447120 17447120 C A GAB4 Silent p.V386V 0.21 TCGA-44-7670-01 22 17578800 17578800 G A IL17RA Missense_Mutation p.V93M 0.48 deleterious(0.02) possibly_damaging(0.513) TCGA-44-7670-01 22 20093787 20093787 G T DGCR8 Nonsense_Mutation p.E626* 0.21 TCGA-44-7670-01 22 22735413 22735413 C A IGLV1-44 Missense_Mutation p.S17Y 0.06 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-44-7670-01 22 26298650 26298650 C T MYO18B Nonsense_Mutation p.Q1632* 0.80 TCGA-44-7670-01 22 29628272 29628272 G T EMID1 Missense_Mutation p.G235V 0.30 deleterious(0.04) probably_damaging(1) TCGA-44-7670-01 22 29881762 29881762 G C NEFH Missense_Mutation p.M378I 0.37 deleterious(0) unknown(0) TCGA-44-7670-01 22 30738840 30738840 G C SF3A1 Nonsense_Mutation p.S227* 0.13 TCGA-44-7670-01 22 32841872 32841872 G T BPIFC Nonsense_Mutation p.Y162* 0.12 TCGA-44-7670-01 22 35481755 35481755 T A ISX 3'UTR 0.32 TCGA-44-7670-01 22 37690736 37690736 A G CYTH4 Silent p.Q46Q 0.23 TCGA-44-7670-01 22 39483021 39483021 A T APOBEC3G Nonsense_Mutation p.K344* 0.27 TCGA-44-7670-01 22 40055735 40055735 T C CACNA1I Missense_Mutation p.Y828H 0.44 deleterious(0) possibly_damaging(0.727) TCGA-44-7670-01 22 40283560 40283560 C A ENTHD1 Missense_Mutation p.G65W 0.16 deleterious(0) probably_damaging(1) TCGA-44-7670-01 22 42388689 42388689 G T SEPT3 Missense_Mutation p.V263L 0.18 deleterious(0) benign(0.139) TCGA-44-7670-01 22 46681155 46681155 G C TTC38 Silent p.A271A 0.21 TCGA-44-7670-01 22 50553643 50553643 A - MOV10L1 Frame_Shift_Del p.T411Pfs*27 0.16 TCGA-44-7670-01 2 101644861 101644861 T C TBC1D8 Silent p.P737P 0.59 TCGA-44-7670-01 2 103040797 103040797 G T IL18RAP Missense_Mutation p.G168W 0.51 deleterious(0) probably_damaging(1) TCGA-44-7670-01 2 103124574 103124574 G - SLC9A4 Frame_Shift_Del p.T413Lfs*45 0.17 TCGA-44-7670-01 2 105858304 105858304 G A GPR45 5'UTR 0.21 TCGA-44-7670-01 2 107073431 107073431 A T RGPD3 Missense_Mutation p.L134Q 0.40 deleterious(0) probably_damaging(0.986) TCGA-44-7670-01 2 108499164 108499164 C A RGPD4 Missense_Mutation p.Q1701K 0.19 deleterious_low_confidence(0) benign(0.042) TCGA-44-7670-01 2 108626928 108626928 C A SLC5A7 Missense_Mutation p.P452T 0.28 tolerated(0.07) benign(0.334) TCGA-44-7670-01 2 110015186 110015186 G T SH3RF3 Silent p.A362A 0.12 TCGA-44-7670-01 2 111431761 111431761 C G BUB1 Missense_Mutation p.E43Q 0.19 tolerated(0.36) benign(0.206) TCGA-44-7670-01 2 112922696 112922696 C A FBLN7 Missense_Mutation p.S118R 0.49 deleterious(0.02) probably_damaging(0.981) TCGA-44-7670-01 2 113089870 113089870 G T ZC3H6 Missense_Mutation p.Q1125H 0.30 tolerated(0.07) probably_damaging(0.997) TCGA-44-7670-01 2 113309351 113309351 G C POLR1B Splice_Site p.X255_splice 0.41 TCGA-44-7670-01 2 11780611 11780611 G A GREB1 3'UTR 0.16 TCGA-44-7670-01 2 11964914 11964914 G T LPIN1 Silent p.A975A 0.10 TCGA-44-7670-01 2 125281979 125281979 C A CNTNAP5 Missense_Mutation p.P475Q 0.23 tolerated(0.9) benign(0.001) TCGA-44-7670-01 2 125284970 125284970 T A CNTNAP5 Missense_Mutation p.V528D 0.11 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 2 130832210 130832210 G T POTEF Silent p.G945G 0.33 TCGA-44-7670-01 2 131487721 131487721 G T GPR148 Missense_Mutation p.G333C 0.44 deleterious(0) probably_damaging(0.978) TCGA-44-7670-01 2 136575089 136575089 C A LCT Missense_Mutation p.W510L 0.27 deleterious(0) probably_damaging(0.991) TCGA-44-7670-01 2 136575090 136575090 A T LCT Missense_Mutation p.W510R 0.24 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 2 142012104 142012104 C A LRP1B Silent p.G150G 0.34 TCGA-44-7670-01 2 143685264 143685264 G T KYNU Missense_Mutation p.W109C 0.18 deleterious(0) probably_damaging(0.996) TCGA-44-7670-01 2 145157509 145157509 A T ZEB2 Missense_Mutation p.F415L 0.16 tolerated(1) possibly_damaging(0.542) TCGA-44-7670-01 2 145157512 145157512 G A ZEB2 Silent p.P414P 0.16 TCGA-44-7670-01 2 152404226 152404226 T A NEB Missense_Mutation p.K6728N 0.41 probably_damaging(1) TCGA-44-7670-01 2 152410485 152410485 C A NEB Missense_Mutation p.D6495Y 0.21 probably_damaging(1) TCGA-44-7670-01 2 15496434 15496434 C T NBAS Missense_Mutation p.M1308I 0.21 deleterious(0.03) benign(0.212) TCGA-44-7670-01 2 155102404 155102404 G - GALNT13 Frame_Shift_Del p.G257Vfs*6 0.25 TCGA-44-7670-01 2 155115595 155115595 A T GALNT13 Missense_Mutation p.T307S 0.13 tolerated(0.58) benign(0.001) TCGA-44-7670-01 2 15514742 15514742 C A NBAS Silent p.L1231L 0.53 TCGA-44-7670-01 2 157186008 157186008 C A NR4A2 Missense_Mutation p.G231C 0.33 deleterious(0.05) benign(0.195) TCGA-44-7670-01 2 158300583 158300583 T A CYTIP 5'UTR 0.54 TCGA-44-7670-01 2 159519545 159519545 C T PKP4 Missense_Mutation p.P783L 0.45 tolerated(0.27) benign(0.15) TCGA-44-7670-01 2 163039931 163039931 C A FAP Missense_Mutation p.W621L 0.47 deleterious(0) probably_damaging(1) TCGA-44-7670-01 2 165956881 165956881 G T SCN3A Silent p.A1299A 0.18 TCGA-44-7670-01 2 168105807 168105807 A C XIRP2 Missense_Mutation p.E2635D 0.23 benign(0.054) TCGA-44-7670-01 2 169764389 169764389 C T G6PC2 Silent p.L290L 0.14 TCGA-44-7670-01 2 169780256 169780256 T C ABCB11 Missense_Mutation p.Q1281R 0.30 tolerated(0.09) benign(0.012) TCGA-44-7670-01 2 169824975 169824975 C T ABCB11 Silent p.A679A 0.50 TCGA-44-7670-01 2 170063588 170063588 C A LRP2 Missense_Mutation p.K2214N 0.31 probably_damaging(0.999) TCGA-44-7670-01 2 178769854 178769854 C G PDE11A Missense_Mutation p.A378P 0.24 tolerated(0.17) probably_damaging(0.981) TCGA-44-7670-01 2 179408970 179408970 A G TTN Missense_Mutation p.Y31996H 0.17 TCGA-44-7670-01 2 179434111 179434111 A G TTN Missense_Mutation p.L25583S 0.22 TCGA-44-7670-01 2 179440483 179440483 G T TTN Missense_Mutation p.P23459H 0.45 TCGA-44-7670-01 2 179442720 179442720 G T TTN Missense_Mutation p.P22841Q 0.31 TCGA-44-7670-01 2 179463902 179463902 C A TTN Missense_Mutation p.S18873I 0.34 TCGA-44-7670-01 2 179474015 179474015 C A TTN Missense_Mutation p.R17341L 0.49 TCGA-44-7670-01 2 179497646 179497646 T A TTN Missense_Mutation p.K14404N 0.55 TCGA-44-7670-01 2 179529239 179529239 G T TTN Silent p.V12076V 0.24 TCGA-44-7670-01 2 179574576 179574576 G A TTN Silent p.L9490L 0.22 TCGA-44-7670-01 2 179599228 179599228 C A TTN Missense_Mutation p.W5108L 0.37 TCGA-44-7670-01 2 179742616 179742616 G A CCDC141 Intron 0.10 TCGA-44-7670-01 2 180307922 180307922 G A ZNF385B 3'UTR 0.50 TCGA-44-7670-01 2 182403888 182403888 G T CERKL Missense_Mutation p.A516D 0.64 tolerated(0.23) benign(0.288) TCGA-44-7670-01 2 183011820 183011820 C A PDE1A Nonsense_Mutation p.E542* 0.38 TCGA-44-7670-01 2 1893222 1893222 C G MYT1L Missense_Mutation p.G769R 0.59 deleterious(0.01) possibly_damaging(0.671) TCGA-44-7670-01 2 189859297 189859297 G C COL3A1 Missense_Mutation p.E442Q 0.20 unknown(0) TCGA-44-7670-01 2 189899839 189899839 G T COL5A2 Missense_Mutation p.Q1386K 0.22 unknown(0) TCGA-44-7670-01 2 196825599 196825600 - T DNAH7 Frame_Shift_Ins p.I759Nfs*13 0.16 TCGA-44-7670-01 2 198324753 198324753 A G COQ10B Missense_Mutation p.T68A 0.17 tolerated(1) benign(0.001) TCGA-44-7670-01 2 206980921 206980921 G C AC007383.4 RNA 0.18 TCGA-44-7670-01 2 207171539 207171539 G C ZDBF2 Missense_Mutation p.E763Q 0.28 deleterious(0.01) possibly_damaging(0.775) TCGA-44-7670-01 2 207454155 207454155 C A ADAM23 Missense_Mutation p.F625L 0.33 deleterious(0.03) possibly_damaging(0.799) TCGA-44-7670-01 2 209045976 209045976 G A C2orf80 Missense_Mutation p.A87V 0.21 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 2 210558660 210558660 G C MAP2 Missense_Mutation p.G589A 0.23 tolerated(0.09) benign(0.026) TCGA-44-7670-01 2 211464260 211464260 G T CPS1 Missense_Mutation p.M514I 0.30 deleterious(0) probably_damaging(0.996) TCGA-44-7670-01 2 211523382 211523382 C A CPS1 Silent p.V1248V 0.21 TCGA-44-7670-01 2 21229397 21229397 G T APOB Missense_Mutation p.T3448N 0.12 possibly_damaging(0.772) TCGA-44-7670-01 2 212295716 212295716 C T ERBB4 Missense_Mutation p.R866K 0.33 tolerated(0.67) benign(0.003) TCGA-44-7670-01 2 21229575 21229575 T C APOB Missense_Mutation p.R3389G 0.15 possibly_damaging(0.881) TCGA-44-7670-01 2 212578375 212578375 T A ERBB4 Splice_Site p.X295_splice 0.19 TCGA-44-7670-01 2 215876849 215876849 G T ABCA12 Missense_Mutation p.P656Q 0.24 deleterious(0) probably_damaging(0.943) TCGA-44-7670-01 2 219544765 219544765 G T STK36 Missense_Mutation p.W366C 0.18 tolerated(0.17) benign(0.005) TCGA-44-7670-01 2 220413950 220413950 G T TMEM198 Silent p.R273R 0.18 TCGA-44-7670-01 2 227662648 227662648 C A IRS1 Missense_Mutation p.K269N 0.25 deleterious(0) probably_damaging(0.928) TCGA-44-7670-01 2 230231801 230231801 G T DNER Missense_Mutation p.S630R 0.29 deleterious(0.04) benign(0.014) TCGA-44-7670-01 2 231406611 231406611 G A SP100 Missense_Mutation p.R803K 0.17 tolerated(0.86) benign(0) TCGA-44-7670-01 2 233349214 233349214 C A ECEL1 Missense_Mutation p.Q384H 0.47 tolerated(0.08) benign(0.009) TCGA-44-7670-01 2 233626121 233626121 T C GIGYF2 Silent p.F169F 0.35 TCGA-44-7670-01 2 233899029 233899029 C A NEU2 Silent p.T135T 0.23 TCGA-44-7670-01 2 234591295 234591295 C T UGT1A7 Missense_Mutation p.P238S 0.20 tolerated(0.12) benign(0.046) TCGA-44-7670-01 2 239307493 239307493 A T TRAF3IP1 Missense_Mutation p.N670I 0.45 deleterious(0) probably_damaging(0.979) TCGA-44-7670-01 2 240016645 240016645 C G HDAC4 Intron 0.24 TCGA-44-7670-01 2 24205808 24205808 G T UBXN2A Missense_Mutation p.E110D 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-44-7670-01 2 242815135 242815135 C G CXXC11 Missense_Mutation p.F476L 0.22 tolerated(0.09) benign(0.264) TCGA-44-7670-01 2 26457193 26457193 T C HADHA Silent p.E115E 0.26 TCGA-44-7670-01 2 27361043 27361043 G C C2orf53 Missense_Mutation p.S52C 0.13 tolerated(0.09) benign(0.001) TCGA-44-7670-01 2 27677520 27677520 C T IFT172 Missense_Mutation p.E1127K 0.20 deleterious(0.01) benign(0.09) TCGA-44-7670-01 2 29386781 29386782 CA - CLIP4 Frame_Shift_Del p.P540Qfs*28 0.13 TCGA-44-7670-01 2 29551294 29551294 C T ALK Missense_Mutation p.G446R 0.05 deleterious(0.01) probably_damaging(0.916) TCGA-44-7670-01 2 30974119 30974119 T A CAPN13 Splice_Site p.X363_splice 0.53 TCGA-44-7670-01 2 33518259 33518259 G T LTBP1 Missense_Mutation p.A1049S 0.38 tolerated(0.78) benign(0.026) TCGA-44-7670-01 2 37283695 37283695 G A HEATR5B Missense_Mutation p.R763C 0.10 deleterious(0.01) possibly_damaging(0.894) TCGA-44-7670-01 2 38978481 38978481 G T SRSF7 5'UTR 0.16 TCGA-44-7670-01 2 40656328 40656328 G C SLC8A1 Missense_Mutation p.R365G 0.15 deleterious(0) probably_damaging(0.988) TCGA-44-7670-01 2 44079810 44079810 C T ABCG8 Missense_Mutation p.S256F 0.63 deleterious(0.01) possibly_damaging(0.809) TCGA-44-7670-01 2 44079825 44079825 G T ABCG8 Missense_Mutation p.G261V 0.57 deleterious(0) probably_damaging(0.988) TCGA-44-7670-01 2 44565657 44565657 C T PREPL Missense_Mutation p.D330N 0.12 tolerated(0.48) benign(0.161) TCGA-44-7670-01 2 48725686 48725686 A G PPP1R21 Missense_Mutation p.M583V 0.16 tolerated(0.11) probably_damaging(0.992) TCGA-44-7670-01 2 54482321 54482321 G T TSPYL6 Missense_Mutation p.S323Y 0.32 deleterious(0) probably_damaging(0.986) TCGA-44-7670-01 2 55253785 55253785 C A RTN4 Nonsense_Mutation p.G484* 0.33 TCGA-44-7670-01 2 58425717 58425717 A T FANCL Silent p.P184P 0.30 TCGA-44-7670-01 2 68622925 68622925 A C PLEK Missense_Mutation p.M344L 0.07 tolerated(0.21) benign(0.001) TCGA-44-7670-01 2 71012617 71012617 C A FIGLA Missense_Mutation p.G180V 0.22 deleterious(0.02) probably_damaging(0.972) TCGA-44-7670-01 2 71337190 71337190 T A MCEE Missense_Mutation p.E147D 0.10 tolerated(0.71) benign(0.001) TCGA-44-7670-01 2 74143844 74143844 G T ACTG2 Missense_Mutation p.R313S 0.57 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-44-7670-01 2 80085192 80085192 G T CTNNA2 Missense_Mutation p.V118L 0.08 tolerated(0.34) benign(0.001) TCGA-44-7670-01 2 80101463 80101463 T G CTNNA2 Missense_Mutation p.F283V 0.25 deleterious(0) possibly_damaging(0.89) TCGA-44-7670-01 2 80816542 80816542 C A CTNNA2 Missense_Mutation p.S707R 0.22 deleterious(0.01) possibly_damaging(0.488) TCGA-44-7670-01 2 85531103 85531105 CGG TT TCF7L1 Frame_Shift_Del p.G249Sfs*28 0.34 TCGA-44-7670-01 2 88425740 88425740 C T FABP1 Silent p.V65V 0.27 TCGA-44-7670-01 2 90199170 90199170 C A IGKV1D-12 Missense_Mutation p.Q111K 0.08 deleterious(0.05) benign(0.035) TCGA-44-7670-01 2 91843404 91843404 G T AC027612.6 RNA 0.22 TCGA-44-7670-01 2 91843405 91843405 G T AC027612.6 RNA 0.22 TCGA-44-7670-01 2 95818903 95818903 C A ZNF514 Missense_Mutation p.E32D 0.48 deleterious(0) probably_damaging(1) TCGA-44-7670-01 2 98928447 98928447 C A VWA3B Missense_Mutation p.H1229Q 0.43 tolerated_low_confidence(0.23) benign(0.016) TCGA-44-7670-01 2 99901279 99901279 G T LYG1 Missense_Mutation p.P113H 0.44 deleterious(0.04) possibly_damaging(0.788) TCGA-44-7670-01 3 108195258 108195258 G T MYH15 Missense_Mutation p.Q427K 0.55 deleterious(0) possibly_damaging(0.854) TCGA-44-7670-01 3 108392970 108392970 G T DZIP3 Nonsense_Mutation p.E879* 0.56 TCGA-44-7670-01 3 11070434 11070434 G A SLC6A1 Silent p.A364A 0.32 TCGA-44-7670-01 3 111564672 111564672 G A PLCXD2 3'UTR 0.20 TCGA-44-7670-01 3 111602824 111602824 G C PHLDB2 Intron 0.11 TCGA-44-7670-01 3 111898518 111898518 C T SLC9C1 Missense_Mutation p.D927N 0.12 tolerated(0.14) benign(0.207) TCGA-44-7670-01 3 112647867 112647867 C A CD200R1 Missense_Mutation p.V189L 0.71 deleterious(0.01) probably_damaging(0.99) TCGA-44-7670-01 3 113594425 113594425 G T GRAMD1C Missense_Mutation p.W118C 0.38 deleterious(0) probably_damaging(1) TCGA-44-7670-01 3 113659180 113659180 G C GRAMD1C Silent p.V632V 0.24 TCGA-44-7670-01 3 118870218 118870218 G T C3orf30 3'UTR 0.28 TCGA-44-7670-01 3 119180955 119180955 T C TMEM39A 5'UTR 0.58 TCGA-44-7670-01 3 121822406 121822406 C A CD86 Missense_Mutation p.L38M 0.14 deleterious(0) probably_damaging(1) TCGA-44-7670-01 3 123019011 123019011 G A ADCY5 Silent p.V952V 0.15 TCGA-44-7670-01 3 125298818 125298818 C T OSBPL11 Silent p.Q100Q 0.27 TCGA-44-7670-01 3 129195286 129195286 G T IFT122 Silent p.G366G 0.16 TCGA-44-7670-01 3 133368263 133368263 G A TOPBP1 Silent p.L490L 0.24 TCGA-44-7670-01 3 137483993 137483993 G T SOX14 Nonsense_Mutation p.E123* 0.49 TCGA-44-7670-01 3 137742562 137742562 C T CLDN18 Silent p.L95L 0.55 TCGA-44-7670-01 3 14199617 14199617 C G XPC Missense_Mutation p.W589S 0.35 deleterious(0) probably_damaging(1) TCGA-44-7670-01 3 142985726 142985726 C A SLC9A9 Nonsense_Mutation p.E586* 0.57 TCGA-44-7670-01 3 147108856 147108856 C A ZIC4 Missense_Mutation p.G339V 0.56 tolerated(0.22) probably_damaging(0.994) TCGA-44-7670-01 3 147128309 147128309 C - ZIC1 Frame_Shift_Del p.A138Rfs*26 0.44 TCGA-44-7670-01 3 147130396 147130396 C A ZIC1 Missense_Mutation p.S358R 0.34 deleterious(0) probably_damaging(0.994) TCGA-44-7670-01 3 154834294 154834294 G C MME Missense_Mutation p.D129H 0.47 deleterious(0.02) probably_damaging(0.996) TCGA-44-7670-01 3 15628078 15628078 G A HACL1 Missense_Mutation p.S138F 0.42 deleterious(0) probably_damaging(0.967) TCGA-44-7670-01 3 156422951 156422951 T A TIPARP 3'UTR 0.19 TCGA-44-7670-01 3 157815970 157815970 G T SHOX2 Missense_Mutation p.P305H 0.55 deleterious(0.05) probably_damaging(1) TCGA-44-7670-01 3 167189475 167189475 G - SERPINI2 Frame_Shift_Del p.G51Efs*2 0.30 TCGA-44-7670-01 3 169513215 169513222 ATGTTACA CTGT LRRC34 Intron 0.39 TCGA-44-7670-01 3 17052968 17052968 G A PLCL2 Missense_Mutation p.M584I 0.35 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 3 171451267 171451267 T C PLD1 Silent p.L191L 0.33 TCGA-44-7670-01 3 178937410 178937410 G A PIK3CA Missense_Mutation p.E600K 0.28 deleterious(0) possibly_damaging(0.869) TCGA-44-7670-01 3 179341856 179341856 A G NDUFB5 3'UTR 0.65 TCGA-44-7670-01 3 182662962 182662962 C A DCUN1D1 Splice_Site p.X234_splice 0.64 TCGA-44-7670-01 3 183896904 183896904 C T AP2M1 Silent p.L112L 0.68 TCGA-44-7670-01 3 184910364 184910364 G C EHHADH Missense_Mutation p.H608D 0.08 tolerated(0.27) benign(0.003) TCGA-44-7670-01 3 184910516 184910516 C A EHHADH Missense_Mutation p.R557M 0.64 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 3 186394987 186394987 C A HRG Missense_Mutation p.P298Q 0.15 deleterious(0.01) possibly_damaging(0.804) TCGA-44-7670-01 3 187447752 187447752 C G BCL6 Silent p.R147R 0.05 TCGA-44-7670-01 3 187447769 187447769 C G BCL6 Missense_Mutation p.E142Q 0.06 deleterious(0.01) possibly_damaging(0.579) TCGA-44-7670-01 3 19295164 19295164 C - KCNH8 Frame_Shift_Del p.N33Mfs*10 0.39 TCGA-44-7670-01 3 197346729 197346729 C T AC024560.3 RNA 0.23 TCGA-44-7670-01 3 27213309 27213309 C A NEK10 Splice_Site p.X944_splice 0.57 TCGA-44-7670-01 3 31638349 31638349 C T STT3B Silent p.F257F 0.09 TCGA-44-7670-01 3 38889159 38889159 C A SCN11A Missense_Mutation p.A1468S 0.34 deleterious(0.01) possibly_damaging(0.901) TCGA-44-7670-01 3 44945424 44945425 - A TGM4 Frame_Shift_Ins p.Y343Lfs*33 0.42 TCGA-44-7670-01 3 45052814 45052814 G T EXOSC7 Missense_Mutation p.V287F 0.64 tolerated(0.23) benign(0.031) TCGA-44-7670-01 3 45052818 45052818 G T EXOSC7 Missense_Mutation p.G288V 0.73 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 3 46480871 46480871 G A LTF Silent p.C608C 0.53 TCGA-44-7670-01 3 47098323 47098323 T G SETD2 Silent p.P2317P 0.64 TCGA-44-7670-01 3 48637544 48637544 C T UQCRC1 Silent p.L418L 0.17 TCGA-44-7670-01 3 48697443 48697443 G T CELSR3 Missense_Mutation p.S875R 0.63 deleterious(0) probably_damaging(1) TCGA-44-7670-01 3 52283608 52283608 G A PPM1M Intron 0.50 TCGA-44-7670-01 3 52426606 52426606 G T DNAH1 Missense_Mutation p.Q3393H 0.53 possibly_damaging(0.873) TCGA-44-7670-01 3 53326447 53326447 C T DCP1A Silent p.V345V 0.38 TCGA-44-7670-01 3 53699724 53699724 G T CACNA1D Missense_Mutation p.M268I 0.50 tolerated(0.05) probably_damaging(0.974) TCGA-44-7670-01 3 56468732 56468732 G A ERC2 Missense_Mutation p.P102S 0.29 tolerated(0.14) possibly_damaging(0.722) TCGA-44-7670-01 3 58622031 58622031 G T FAM3D Missense_Mutation p.P192H 0.72 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 3 65347012 65347012 T C MAGI1 Missense_Mutation p.I1166V 0.29 tolerated(1) benign(0.023) TCGA-44-7670-01 3 74334455 74334455 C G CNTN3 Splice_Site p.X902_splice 0.56 TCGA-44-7670-01 3 78656106 78656106 C T ROBO1 Silent p.V1507V 0.56 TCGA-44-7670-01 3 96963199 96963199 G T EPHA6 Intron 0.20 TCGA-44-7670-01 3 97686167 97686167 T A MINA Missense_Mutation p.S91C 0.32 deleterious(0.04) possibly_damaging(0.838) TCGA-44-7670-01 4 111119499 111119499 G T ELOVL6 5'UTR 0.36 TCGA-44-7670-01 4 114171000 114171000 C T ANK2 Silent p.P324P 0.42 TCGA-44-7670-01 4 114286205 114286205 C A ANK2 Silent p.L3633L 0.32 TCGA-44-7670-01 4 114680554 114680554 C A CAMK2D Missense_Mutation p.V28L 0.31 deleterious_low_confidence(0) benign(0.07) TCGA-44-7670-01 4 115856447 115856447 A G NDST4 Missense_Mutation p.F484S 0.31 deleterious(0) benign(0.365) TCGA-44-7670-01 4 121675745 121675745 T C PRDM5 Missense_Mutation p.N529S 0.29 tolerated(0.49) benign(0.091) TCGA-44-7670-01 4 134084222 134084222 G C PCDH10 Missense_Mutation p.G963A 0.48 tolerated(0.35) benign(0.022) TCGA-44-7670-01 4 141484331 141484331 G A UCP1 Silent p.I187I 0.33 TCGA-44-7670-01 4 141888788 141888788 C A RNF150 Missense_Mutation p.D242Y 0.70 tolerated(0.05) possibly_damaging(0.885) TCGA-44-7670-01 4 147796051 147796051 C A TTC29 Nonsense_Mutation p.E206* 0.68 TCGA-44-7670-01 4 15581639 15581639 C T CC2D2A Nonsense_Mutation p.Q1274* 0.09 TCGA-44-7670-01 4 159593549 159593549 G A ETFDH 5'UTR 0.57 TCGA-44-7670-01 4 164506997 164506997 G T MARCH1 Silent p.S109S 0.17 TCGA-44-7670-01 4 165891118 165891118 C T TRIM61 Missense_Mutation p.E13K 0.09 deleterious(0.01) benign(0.139) TCGA-44-7670-01 4 166981261 166981261 A G TLL1 Missense_Mutation p.N643S 0.43 deleterious(0.03) benign(0.248) TCGA-44-7670-01 4 167656143 167656143 C T SPOCK3 Missense_Mutation p.E414K 0.27 tolerated_low_confidence(0.2) unknown(0) TCGA-44-7670-01 4 170912639 170912639 T A MFAP3L Missense_Mutation p.T374S 0.53 tolerated_low_confidence(0.64) benign(0.001) TCGA-44-7670-01 4 17488827 17488827 C A QDPR Missense_Mutation p.R221L 0.27 deleterious(0) possibly_damaging(0.784) TCGA-44-7670-01 4 177032808 177032808 G T WDR17 Missense_Mutation p.G50V 0.35 deleterious(0) possibly_damaging(0.862) TCGA-44-7670-01 4 187628590 187628590 C A FAT1 Missense_Mutation p.G798W 0.67 probably_damaging(1) TCGA-44-7670-01 4 2254172 2254172 G A MXD4 Missense_Mutation p.T91M 0.30 deleterious(0.01) probably_damaging(0.989) TCGA-44-7670-01 4 27019334 27019334 G T STIM2 Silent p.G505G 0.23 TCGA-44-7670-01 4 30725755 30725755 G T PCDH7 Missense_Mutation p.C904F 0.08 deleterious(0.01) probably_damaging(0.989) TCGA-44-7670-01 4 38138987 38138987 C T TBC1D1 3'UTR 0.31 TCGA-44-7670-01 4 4249407 4249407 C T TMEM128 5'UTR 0.11 TCGA-44-7670-01 4 44176732 44176732 T C KCTD8 3'UTR 0.37 TCGA-44-7670-01 4 47517562 47517562 G T ATP10D Missense_Mutation p.K120N 0.26 deleterious(0.03) probably_damaging(0.98) TCGA-44-7670-01 4 57181941 57181941 C G KIAA1211 Missense_Mutation p.A758G 0.47 tolerated(0.14) possibly_damaging(0.567) TCGA-44-7670-01 4 65146797 65146797 G T TECRL Nonsense_Mutation p.S309* 0.19 TCGA-44-7670-01 4 65275040 65275040 C T TECRL Silent p.S10S 0.29 TCGA-44-7670-01 4 65275046 65275046 G T TECRL Silent p.L8L 0.28 TCGA-44-7670-01 4 675791 675791 C A MFSD7 Missense_Mutation p.A546S 0.29 tolerated_low_confidence(0.26) benign(0.025) TCGA-44-7670-01 4 68504713 68504713 C A UBA6 Missense_Mutation p.D562Y 0.34 deleterious(0) probably_damaging(0.969) TCGA-44-7670-01 4 68919700 68919700 A C TMPRSS11F Missense_Mutation p.L415R 0.16 tolerated(0.8) probably_damaging(1) TCGA-44-7670-01 4 71698153 71698153 T A GRSF1 Missense_Mutation p.N229Y 0.10 deleterious(0) probably_damaging(0.995) TCGA-44-7670-01 4 80246951 80246951 C A NAA11 Missense_Mutation p.Q27H 0.52 deleterious(0.04) benign(0.032) TCGA-44-7670-01 4 88983142 88983142 G T PKD2 Missense_Mutation p.D702Y 0.71 deleterious(0) probably_damaging(0.914) TCGA-44-7670-01 4 90169436 90169436 G A GPRIN3 Missense_Mutation p.S609F 0.33 tolerated(0.12) possibly_damaging(0.847) TCGA-44-7670-01 4 9783849 9783849 G T DRD5 Missense_Mutation p.V66L 0.32 tolerated(0.51) benign(0.075) TCGA-44-7670-01 4 9783943 9783943 G T DRD5 Missense_Mutation p.W97L 0.26 deleterious(0.01) possibly_damaging(0.651) TCGA-44-7670-01 4 9784087 9784087 C A DRD5 Missense_Mutation p.P145H 0.35 deleterious(0) probably_damaging(1) TCGA-44-7670-01 5 10227603 10227603 C A FAM173B Nonsense_Mutation p.E218* 0.42 TCGA-44-7670-01 5 135207338 135207338 G C SLC25A48 Intron 0.21 TCGA-44-7670-01 5 135231498 135231498 A T IL9 Missense_Mutation p.L3Q 0.75 deleterious(0.03) unknown(0) TCGA-44-7670-01 5 140202807 140202807 G C PCDHA5 Missense_Mutation p.A483P 0.17 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-44-7670-01 5 140203561 140203561 G T PCDHA5 Missense_Mutation p.G734V 0.67 tolerated_low_confidence(0.1) benign(0.052) TCGA-44-7670-01 5 140250979 140250979 C A PCDHA11 Missense_Mutation p.P764H 0.73 deleterious_low_confidence(0.02) benign(0.152) TCGA-44-7670-01 5 140480404 140480404 G A PCDHB3 Silent p.E57E 0.25 TCGA-44-7670-01 5 140482553 140482553 T G PCDHB3 Missense_Mutation p.F774V 0.35 tolerated_low_confidence(0.13) benign(0.012) TCGA-44-7670-01 5 140553499 140553499 C G PCDHB7 Silent p.P361P 0.61 TCGA-44-7670-01 5 140572190 140572190 G T PCDHB10 Missense_Mutation p.G22V 0.37 tolerated_low_confidence(0.2) benign(0.062) TCGA-44-7670-01 5 140595266 140595266 T C PCDHB13 Missense_Mutation p.L524P 0.38 deleterious_low_confidence(0) possibly_damaging(0.882) TCGA-44-7670-01 5 140712366 140712366 G T PCDHGA1 Silent p.L705L 0.17 TCGA-44-7670-01 5 140718777 140718777 G T PCDHGA2 Missense_Mutation p.R80L 0.71 deleterious_low_confidence(0.01) possibly_damaging(0.846) TCGA-44-7670-01 5 140736964 140736964 G T PCDHGA4 Missense_Mutation p.A733S 0.49 tolerated_low_confidence(0.16) benign(0.015) TCGA-44-7670-01 5 140753848 140753848 C A PCDHGA6 Silent p.I66I 0.61 TCGA-44-7670-01 5 140754055 140754055 G T PCDHGA6 Missense_Mutation p.K135N 0.42 tolerated_low_confidence(0.35) benign(0.045) TCGA-44-7670-01 5 140754056 140754056 G T PCDHGA6 Nonsense_Mutation p.E136* 0.41 TCGA-44-7670-01 5 140864778 140864778 G C PCDHGC4 Missense_Mutation p.R13P 0.34 tolerated(0.08) benign(0) TCGA-44-7670-01 5 145720006 145720006 G A POU4F3 Silent p.%3D 0.17 TCGA-44-7670-01 5 145969471 145969471 T C PPP2R2B 3'UTR 0.15 TCGA-44-7670-01 5 147470781 147470781 A C SPINK5 Missense_Mutation p.N219T 0.33 tolerated(0.29) benign(0.059) TCGA-44-7670-01 5 153755919 153755919 G C GALNT10 Silent p.L217L 0.23 TCGA-44-7670-01 5 154394675 154394675 G A KIF4B Missense_Mutation p.R419K 0.38 tolerated(0.53) benign(0.003) TCGA-44-7670-01 5 156309 156309 G C PLEKHG4B Missense_Mutation p.G422R 0.32 tolerated(0.44) probably_damaging(0.979) TCGA-44-7670-01 5 158267100 158267100 G A EBF1 Silent p.F191F 0.59 TCGA-44-7670-01 5 159665711 159665711 T A FABP6 3'UTR 0.71 TCGA-44-7670-01 5 161580243 161580243 C T GABRG2 Nonsense_Mutation p.R473* 0.60 TCGA-44-7670-01 5 161580244 161580244 G C GABRG2 Missense_Mutation p.R473P 0.61 deleterious(0.05) benign(0.028) TCGA-44-7670-01 5 161580330 161580330 T G GABRG2 Missense_Mutation p.C502G 0.27 tolerated(0.42) benign(0.003) TCGA-44-7670-01 5 162886923 162886923 C G NUDCD2 Missense_Mutation p.C45S 0.15 deleterious(0.01) possibly_damaging(0.564) TCGA-44-7670-01 5 16672932 16672932 C T MYO10 Silent p.V1725V 0.46 TCGA-44-7670-01 5 169135183 169135183 G T DOCK2 Missense_Mutation p.C465F 0.25 tolerated(0.8) benign(0.01) TCGA-44-7670-01 5 174869971 174869971 G T DRD1 Silent p.V44V 0.32 TCGA-44-7670-01 5 176002986 176002986 G C CDHR2 Missense_Mutation p.E332Q 0.36 tolerated(0.51) benign(0.024) TCGA-44-7670-01 5 176304276 176304276 G A UNC5A Missense_Mutation p.V488M 0.52 tolerated(0.18) benign(0.164) TCGA-44-7670-01 5 179393827 179393827 C T RNF130 Missense_Mutation p.E377K 0.61 deleterious_low_confidence(0.01) possibly_damaging(0.551) TCGA-44-7670-01 5 180048064 180048064 C G FLT4 Intron 0.39 TCGA-44-7670-01 5 24535323 24535323 G T CDH10 Missense_Mutation p.Q238K 0.45 tolerated(0.06) possibly_damaging(0.906) TCGA-44-7670-01 5 33456123 33456123 G T TARS Missense_Mutation p.C270F 0.18 tolerated(0.06) benign(0.359) TCGA-44-7670-01 5 33576721 33576721 G T ADAMTS12 Missense_Mutation p.T1137N 0.22 tolerated(0.09) possibly_damaging(0.478) TCGA-44-7670-01 5 38451501 38451501 C A EGFLAM Silent p.P884P 0.42 TCGA-44-7670-01 5 43645480 43645480 G T NNT Missense_Mutation p.A438S 0.38 tolerated(0.22) benign(0.002) TCGA-44-7670-01 5 45262526 45262526 C T HCN1 Missense_Mutation p.A724T 0.32 deleterious_low_confidence(0.04) probably_damaging(0.978) TCGA-44-7670-01 5 45262657 45262657 G C HCN1 Missense_Mutation p.S680C 0.61 deleterious_low_confidence(0.01) benign(0.431) TCGA-44-7670-01 5 45262811 45262811 C A HCN1 Missense_Mutation p.D629Y 0.17 deleterious(0) probably_damaging(0.995) TCGA-44-7670-01 5 64850710 64850710 C A CENPK Missense_Mutation p.D9Y 0.62 deleterious(0) probably_damaging(0.963) TCGA-44-7670-01 5 90059178 90059178 G T GPR98 Silent p.T4059T 0.47 TCGA-44-7670-01 5 9054200 9054200 T G SEMA5A Silent p.P896P 0.39 TCGA-44-7670-01 5 9136697 9136697 C A SEMA5A Missense_Mutation p.W506C 0.23 deleterious(0) probably_damaging(0.992) TCGA-44-7670-01 5 94927329 94927329 G - ARSK Frame_Shift_Del 0.24 TCGA-44-7670-01 5 98236897 98236897 G C CHD1 Missense_Mutation p.Q194E 0.23 tolerated(0.34) benign(0.004) TCGA-44-7670-01 6 111320934 111320934 G T RPF2 Missense_Mutation p.V113L 0.20 tolerated(0.57) benign(0.019) TCGA-44-7670-01 6 116600489 116600489 C T TSPYL1 Missense_Mutation p.E169K 0.17 tolerated(0.32) benign(0.002) TCGA-44-7670-01 6 117622204 117622204 G C ROS1 Missense_Mutation p.F2222L 0.38 tolerated(0.09) benign(0.001) TCGA-44-7670-01 6 128411000 128411000 C A PTPRK Missense_Mutation p.G434C 0.20 deleterious(0) benign(0.281) TCGA-44-7670-01 6 130182343 130182343 C G TMEM244 5'UTR 0.09 TCGA-44-7670-01 6 132695848 132695848 G T MOXD1 Silent p.A111A 0.14 TCGA-44-7670-01 6 13697085 13697085 C T RANBP9 Silent p.T205T 0.04 TCGA-44-7670-01 6 137245529 137245529 G T SLC35D3 Missense_Mutation p.A316S 0.48 tolerated(0.49) benign(0) TCGA-44-7670-01 6 143093749 143093749 C G HIVEP2 Silent p.T709T 0.45 TCGA-44-7670-01 6 146480550 146480550 C A GRM1 Missense_Mutation p.A256D 0.43 deleterious(0) probably_damaging(1) TCGA-44-7670-01 6 147680250 147680250 G T STXBP5 Missense_Mutation p.R779L 0.35 deleterious(0) benign(0.13) TCGA-44-7670-01 6 147680251 147680251 G T STXBP5 Silent p.R779R 0.39 TCGA-44-7670-01 6 147684481 147684481 G A STXBP5 Silent p.L852L 0.21 TCGA-44-7670-01 6 150004668 150004668 C G LATS1 Missense_Mutation p.W519C 0.15 deleterious(0) probably_damaging(0.962) TCGA-44-7670-01 6 152949440 152949440 C A SYNE1 Silent p.R9R 0.26 TCGA-44-7670-01 6 155154520 155154520 G - SCAF8 Frame_Shift_Del p.T1271Hfs*13 0.18 TCGA-44-7670-01 6 155728288 155728288 T A NOX3 Missense_Mutation p.K519M 0.21 deleterious(0.01) possibly_damaging(0.894) TCGA-44-7670-01 6 155743851 155743851 G C NOX3 Missense_Mutation p.Q429E 0.44 tolerated(0.35) benign(0.006) TCGA-44-7670-01 6 155749951 155749951 G T NOX3 Silent p.L374L 0.17 TCGA-44-7670-01 6 160468351 160468351 G T IGF2R Missense_Mutation p.G738C 0.47 deleterious(0) probably_damaging(1) TCGA-44-7670-01 6 161085237 161085237 T A LPA Nonsense_Mutation p.K4* 0.36 TCGA-44-7670-01 6 161135903 161135903 T A PLG Missense_Mutation p.W209R 0.15 deleterious(0) probably_damaging(1) TCGA-44-7670-01 6 162206851 162206851 C G PARK2 Missense_Mutation p.R275P 0.35 deleterious(0) probably_damaging(0.998) TCGA-44-7670-01 6 167717444 167717444 C A UNC93A Missense_Mutation p.F221L 0.35 tolerated(0.16) benign(0.076) TCGA-44-7670-01 6 167790080 167790080 C A TCP10 Missense_Mutation p.R177M 0.29 deleterious(0) probably_damaging(0.964) TCGA-44-7670-01 6 17282943 17282943 T C RBM24 Intron 0.32 TCGA-44-7670-01 6 18236822 18236822 G C DEK Missense_Mutation p.S303C 0.10 tolerated(0.05) probably_damaging(0.971) TCGA-44-7670-01 6 25581506 25581506 G T LRRC16A Missense_Mutation p.V949L 0.71 tolerated(0.12) benign(0.391) TCGA-44-7670-01 6 25830818 25830818 G T SLC17A1 5'UTR 0.08 TCGA-44-7670-01 6 26197189 26197189 C T HIST1H3D Missense_Mutation p.C97Y 0.43 tolerated_low_confidence(0.06) benign(0.042) TCGA-44-7670-01 6 26200197 26200197 G A HIST1H2BF 3'UTR 0.09 TCGA-44-7670-01 6 2679563 2679563 C G MYLK4 Missense_Mutation p.V280L 0.11 deleterious(0.03) possibly_damaging(0.891) TCGA-44-7670-01 6 2679576 2679576 C G MYLK4 Silent p.V275V 0.11 TCGA-44-7670-01 6 2679608 2679608 C T MYLK4 Missense_Mutation p.G265R 0.12 deleterious(0) probably_damaging(1) TCGA-44-7670-01 6 2679643 2679643 C G MYLK4 Splice_Site p.X253_splice 0.13 TCGA-44-7670-01 6 2693048 2693048 C A MYLK4 Missense_Mutation p.V69F 0.25 tolerated_low_confidence(0.05) benign(0.236) TCGA-44-7670-01 6 27806487 27806487 G A HIST1H2BN Silent p.K16K 0.16 TCGA-44-7670-01 6 28227326 28227326 C A NKAPL Missense_Mutation p.D59E 0.36 deleterious(0.01) unknown(0) TCGA-44-7670-01 6 29455569 29455569 C T MAS1L Silent p.E37E 0.09 TCGA-44-7670-01 6 30570015 30570015 C A PPP1R10 Missense_Mutation p.G804V 0.64 deleterious_low_confidence(0) unknown(0) TCGA-44-7670-01 6 30638193 30638193 C A DHX16 Missense_Mutation p.K220N 0.11 tolerated(0.16) unknown(0) TCGA-44-7670-01 6 30673379 30673379 G C MDC1 Missense_Mutation p.S1194C 0.21 deleterious(0.01) possibly_damaging(0.628) TCGA-44-7670-01 6 31807440 31807441 GG - C6orf48 Missense_Mutation 0.30 TCGA-44-7670-01 6 31911286 31911286 C T CFB Silent p.L364L 0.21 TCGA-44-7670-01 6 32024401 32024401 C A TNXB Missense_Mutation p.G2702V 0.50 probably_damaging(0.999) TCGA-44-7670-01 6 32025888 32025888 T A TNXB Missense_Mutation p.Y2591F 0.16 probably_damaging(0.986) TCGA-44-7670-01 6 32026081 32026081 C - TNXB Frame_Shift_Del p.E2527Sfs*2 0.18 TCGA-44-7670-01 6 32168650 32168650 G T NOTCH4 Missense_Mutation p.L1425M 0.18 deleterious(0.01) probably_damaging(0.971) TCGA-44-7670-01 6 3226399 3226399 C T TUBB2B Missense_Mutation p.V91M 0.48 deleterious_low_confidence(0) possibly_damaging(0.862) TCGA-44-7670-01 6 32363858 32363858 C T BTNL2 Missense_Mutation p.D346N 0.11 tolerated(0.25) possibly_damaging(0.585) TCGA-44-7670-01 6 32629998 32629998 G C HLA-DQB1 Missense_Mutation p.S136C 0.24 deleterious(0.02) possibly_damaging(0.879) TCGA-44-7670-01 6 33744940 33744940 C A LEMD2 Missense_Mutation p.M411I 0.38 deleterious(0) probably_damaging(0.941) TCGA-44-7670-01 6 34789481 34789481 G A UHRF1BP1 Silent p.G32G 0.48 TCGA-44-7670-01 6 35277470 35277470 G T DEF6 Silent p.T40T 0.66 TCGA-44-7670-01 6 36290124 36290124 C G C6orf222 Missense_Mutation p.E523Q 0.56 deleterious(0.01) possibly_damaging(0.859) TCGA-44-7670-01 6 39046924 39046924 G C GLP1R Missense_Mutation p.V331L 0.11 tolerated(1) benign(0.102) TCGA-44-7670-01 6 43271882 43271882 T C SLC22A7 Missense_Mutation p.Y498H 0.04 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 6 43271936 43271936 A T SLC22A7 Missense_Mutation p.R516W 0.04 tolerated(0.14) possibly_damaging(0.868) TCGA-44-7670-01 6 44115157 44115157 A T TMEM63B Missense_Mutation p.S303C 0.82 deleterious(0.04) benign(0.293) TCGA-44-7670-01 6 47681720 47681720 A T GPR115 Missense_Mutation p.I247F 0.15 deleterious(0) possibly_damaging(0.642) TCGA-44-7670-01 6 47682757 47682757 C T GPR115 Silent p.S592S 0.10 TCGA-44-7670-01 6 49666144 49666144 G T CRISP2 Missense_Mutation p.D116E 0.48 tolerated(0.07) benign(0.043) TCGA-44-7670-01 6 49667590 49667590 C A CRISP2 Missense_Mutation p.E66D 0.31 tolerated(0.41) benign(0.002) TCGA-44-7670-01 6 50786601 50786601 A T TFAP2B 5'UTR 0.33 TCGA-44-7670-01 6 51927327 51927327 G T PKHD1 Missense_Mutation p.Q370K 0.22 tolerated(0.33) benign(0.034) TCGA-44-7670-01 6 52054021 52054021 C A IL17A Missense_Mutation p.F133L 0.87 deleterious(0.02) probably_damaging(0.977) TCGA-44-7670-01 6 55216119 55216119 C G GFRAL Missense_Mutation p.Q147E 0.12 deleterious(0) possibly_damaging(0.507) TCGA-44-7670-01 6 55360299 55360299 T G HMGCLL1 Missense_Mutation p.K268T 0.55 tolerated(0.07) benign(0.329) TCGA-44-7670-01 6 56397172 56397172 C A DST Missense_Mutation p.W3070L 0.53 probably_damaging(0.967) TCGA-44-7670-01 6 56397174 56397174 T A DST Missense_Mutation p.R3069S 0.54 probably_damaging(0.931) TCGA-44-7670-01 6 56481478 56481478 C T DST Intron 0.13 TCGA-44-7670-01 6 56515773 56515773 T C DST Missense_Mutation p.Y251C 0.57 probably_damaging(1) TCGA-44-7670-01 6 57467183 57467183 C T PRIM2 3'UTR 0.11 TCGA-44-7670-01 6 66063351 66063351 C A EYS Nonsense_Mutation p.G487* 0.15 TCGA-44-7670-01 6 70071016 70071016 G T BAI3 Missense_Mutation p.C1284F 0.22 deleterious(0) probably_damaging(0.991) TCGA-44-7670-01 6 70071032 70071032 G A BAI3 Silent p.L1289L 0.36 TCGA-44-7670-01 6 70873262 70873262 G T COL19A1 Missense_Mutation p.G792C 0.37 deleterious(0) probably_damaging(1) TCGA-44-7670-01 6 72947526 72947530 GTTGT TTTG RIMS1 Frame_Shift_Del p.V620Ffs*6 0.15 TCGA-44-7670-01 6 75818746 75818746 C A COL12A1 Missense_Mutation p.R2696S 0.36 benign(0.046) TCGA-44-7670-01 6 85447030 85447030 G T TBX18 Silent p.A399A 0.31 TCGA-44-7670-01 6 86203677 86203677 A C NT5E Missense_Mutation p.L560F 0.31 deleterious(0.04) benign(0.052) TCGA-44-7670-01 6 87968387 87968387 G C ZNF292 Missense_Mutation p.Q1680H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.67) TCGA-44-7670-01 6 88773917 88773917 G T SPACA1 Missense_Mutation p.L237F 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-44-7670-01 6 89975382 89975382 C A GABRR2 Missense_Mutation p.W280L 0.33 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 6 90457071 90457071 C G MDN1 Missense_Mutation p.W1294S 0.20 probably_damaging(0.962) TCGA-44-7670-01 6 99328438 99328438 A C FBXL4 Missense_Mutation p.S460R 0.26 deleterious(0.04) benign(0.012) TCGA-44-7670-01 7 100552541 100552541 T C MUC3A Missense_Mutation p.V431A 0.45 deleterious(0.01) probably_damaging(0.932) TCGA-44-7670-01 7 100677982 100677982 T A MUC17 Silent p.T1095T 0.69 TCGA-44-7670-01 7 100678729 100678729 C - MUC17 Frame_Shift_Del p.N1345Tfs*24 0.41 TCGA-44-7670-01 7 104753045 104753045 C A KMT2E Missense_Mutation p.N1614K 0.69 deleterious_low_confidence(0.01) benign(0.403) TCGA-44-7670-01 7 107836209 107836209 C G NRCAM Missense_Mutation p.E487Q 0.20 tolerated(0.06) possibly_damaging(0.734) TCGA-44-7670-01 7 123599874 123599874 G A SPAM1 Missense_Mutation p.D461N 0.42 tolerated(0.31) benign(0.009) TCGA-44-7670-01 7 127251591 127251591 C G PAX4 Missense_Mutation p.W296S 0.28 deleterious(0.02) probably_damaging(0.943) TCGA-44-7670-01 7 134916754 134916754 G C STRA8 Missense_Mutation p.K8N 0.66 deleterious_low_confidence(0.02) benign(0.009) TCGA-44-7670-01 7 135282896 135282896 C T NUP205 Missense_Mutation p.L739F 0.63 deleterious(0.01) probably_damaging(0.995) TCGA-44-7670-01 7 136700567 136700567 A G CHRM2 Missense_Mutation p.N319D 0.29 tolerated(0.69) benign(0.216) TCGA-44-7670-01 7 138312951 138312951 G T SVOPL Missense_Mutation p.P341T 0.65 tolerated(0.21) benign(0.023) TCGA-44-7670-01 7 141427271 141427271 C A WEE2 Intron 0.65 TCGA-44-7670-01 7 141618956 141618956 T G OR9A4 Missense_Mutation p.L94W 0.11 deleterious(0.01) benign(0.053) TCGA-44-7670-01 7 142143715 142143715 G T TRBV6-7 Missense_Mutation p.P94H 0.63 deleterious(0.05) possibly_damaging(0.889) TCGA-44-7670-01 7 144380019 144380019 G T TPK1 Silent p.T56T 0.28 TCGA-44-7670-01 7 148701251 148701251 C G PDIA4 Missense_Mutation p.G525R 0.70 deleterious(0) probably_damaging(0.993) TCGA-44-7670-01 7 150217654 150217654 G - GIMAP7 Frame_Shift_Del p.A199Lfs*15 0.43 TCGA-44-7670-01 7 150767073 150767073 G T SLC4A2 Missense_Mutation p.G396V 0.65 deleterious(0.01) probably_damaging(0.997) TCGA-44-7670-01 7 151874875 151874875 C G KMT2C Missense_Mutation p.G2555R 0.32 probably_damaging(0.996) TCGA-44-7670-01 7 15470662 15470662 T A AGMO Nonsense_Mutation p.R161* 0.13 TCGA-44-7670-01 7 154875913 154875913 G A HTR5A Missense_Mutation p.A264T 0.33 tolerated(0.1) benign(0.013) TCGA-44-7670-01 7 15725581 15725581 G T MEOX2 Nonsense_Mutation p.Y149* 0.58 TCGA-44-7670-01 7 21901539 21901539 C A DNAH11 Silent p.I3764I 0.77 TCGA-44-7670-01 7 2297015 2297015 C T SNX8 Silent p.E373E 0.33 TCGA-44-7670-01 7 26765118 26765118 T A SKAP2 Missense_Mutation p.H242L 0.57 tolerated(0.38) benign(0.003) TCGA-44-7670-01 7 27238774 27238774 C A HOXA13 Splice_Site p.X308_splice 0.65 TCGA-44-7670-01 7 47317608 47317608 C A TNS3 3'UTR 0.88 TCGA-44-7670-01 7 47852827 47852827 C A PKD1L1 Missense_Mutation p.G2413V 0.58 tolerated(0.14) benign(0.103) TCGA-44-7670-01 7 5923627 5923627 G A OCM Missense_Mutation p.E101K 0.31 deleterious(0) benign(0.191) TCGA-44-7670-01 7 63981790 63981790 T A ZNF680 Missense_Mutation p.T448S 0.54 tolerated(0.6) benign(0.046) TCGA-44-7670-01 7 66098289 66098289 G T KCTD7 Nonsense_Mutation p.G58* 0.53 TCGA-44-7670-01 7 66270381 66270381 C G KCTD7 Missense_Mutation p.L359V 0.31 deleterious(0) probably_damaging(0.927) TCGA-44-7670-01 7 6806500 6806500 G T RSPH10B2 Missense_Mutation p.G258C 0.26 deleterious(0) probably_damaging(1) TCGA-44-7670-01 7 75051125 75051125 C G POM121C Missense_Mutation p.G804R 0.12 deleterious(0) probably_damaging(0.961) TCGA-44-7670-01 7 75051152 75051152 C A POM121C Missense_Mutation p.G795C 0.48 deleterious(0) probably_damaging(1) TCGA-44-7670-01 7 84644484 84644484 G T SEMA3D Missense_Mutation p.H532N 0.43 deleterious(0) benign(0.248) TCGA-44-7670-01 7 84727122 84727122 T A SEMA3D Missense_Mutation p.K104M 0.42 deleterious(0) probably_damaging(0.936) TCGA-44-7670-01 7 86394822 86394822 G T GRM3 Missense_Mutation p.D121Y 0.26 deleterious(0) possibly_damaging(0.883) TCGA-44-7670-01 7 87148649 87148649 C A ABCB1 Missense_Mutation p.V974F 0.41 deleterious(0) possibly_damaging(0.778) TCGA-44-7670-01 7 89891302 89891302 G T C7orf63 Silent p.L96L 0.80 TCGA-44-7670-01 7 89976012 89976012 G A GTPBP10 5'UTR 0.79 TCGA-44-7670-01 7 90419930 90419930 G - CDK14 Frame_Shift_Del p.E152Kfs*16 0.45 TCGA-44-7670-01 7 93067545 93067545 G T CALCR Silent p.T314T 0.88 TCGA-44-7670-01 7 99063733 99063733 C A ATP5J2 Splice_Site p.X11_splice 0.62 TCGA-44-7670-01 8 10464791 10464791 G T RP1L1 Missense_Mutation p.P2273T 0.48 unknown(0) TCGA-44-7670-01 8 10469162 10469162 C A RP1L1 Missense_Mutation p.G816W 0.29 probably_damaging(0.961) TCGA-44-7670-01 8 10469891 10469891 C A RP1L1 Missense_Mutation p.D573Y 0.38 possibly_damaging(0.473) TCGA-44-7670-01 8 105503727 105503727 T A LRP12 Missense_Mutation p.Q585L 0.40 tolerated(0.06) probably_damaging(0.989) TCGA-44-7670-01 8 106815547 106815547 C T ZFPM2 Silent p.I1079I 0.29 TCGA-44-7670-01 8 106815570 106815570 A G ZFPM2 Missense_Mutation p.N1087S 0.26 deleterious_low_confidence(0.04) benign(0.026) TCGA-44-7670-01 8 110355686 110355686 C A ENY2 Missense_Mutation p.F94L 0.40 tolerated(0.07) possibly_damaging(0.447) TCGA-44-7670-01 8 113484862 113484862 C A CSMD3 Nonsense_Mutation p.G1785* 0.12 TCGA-44-7670-01 8 113697930 113697930 C T CSMD3 Missense_Mutation p.M729I 0.39 tolerated(0.06) possibly_damaging(0.828) TCGA-44-7670-01 8 114111033 114111035 TCT AA CSMD3 Frame_Shift_Del p.E289Dfs*2 0.22 TCGA-44-7670-01 8 11615981 11615981 G T GATA4 Silent p.A442A 0.20 TCGA-44-7670-01 8 125074109 125074109 A G FER1L6 Missense_Mutation p.E1055G 0.20 deleterious(0.01) possibly_damaging(0.898) TCGA-44-7670-01 8 12956865 12956865 C A DLC1 Missense_Mutation p.R994M 0.34 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 8 133912572 133912572 A T TG Missense_Mutation p.S1141C 0.50 deleterious(0.01) possibly_damaging(0.907) TCGA-44-7670-01 8 139163958 139163958 G T FAM135B Missense_Mutation p.N920K 0.24 tolerated_low_confidence(0.07) benign(0.014) TCGA-44-7670-01 8 139278033 139278033 C A FAM135B Silent p.R70R 0.33 TCGA-44-7670-01 8 139791781 139791781 G T COL22A1 Missense_Mutation p.P559T 0.49 unknown(0) TCGA-44-7670-01 8 140631244 140631244 G T KCNK9 Missense_Mutation p.L128M 0.35 deleterious(0.03) probably_damaging(0.92) TCGA-44-7670-01 8 144991533 144991533 C T PLEC Missense_Mutation p.M4289I 0.44 probably_damaging(0.997) TCGA-44-7670-01 8 146107404 146107404 C A ZNF250 Missense_Mutation p.K393N 0.16 deleterious(0) probably_damaging(0.963) TCGA-44-7670-01 8 20036811 20036811 C A SLC18A1 Missense_Mutation p.M103I 0.28 tolerated(0.51) benign(0.001) TCGA-44-7670-01 8 21835336 21835336 T A XPO7 Silent p.P273P 0.20 TCGA-44-7670-01 8 22864676 22864676 G T RHOBTB2 Silent p.G328G 0.29 TCGA-44-7670-01 8 25226140 25226140 A T DOCK5 Missense_Mutation p.T1113S 0.19 deleterious(0) probably_damaging(0.937) TCGA-44-7670-01 8 26627890 26627890 C A ADRA1A Missense_Mutation p.G393C 0.14 deleterious_low_confidence(0.01) probably_damaging(0.931) TCGA-44-7670-01 8 28827628 28827628 A T HMBOX1 Missense_Mutation p.Q31L 0.47 deleterious(0) probably_damaging(0.996) TCGA-44-7670-01 8 29924381 29924381 C A TMEM66 Nonsense_Mutation p.G252* 0.35 TCGA-44-7670-01 8 35453098 35453098 C A UNC5D Missense_Mutation p.P165T 0.28 deleterious(0.01) probably_damaging(1) TCGA-44-7670-01 8 35583812 35583812 A C UNC5D Missense_Mutation p.K482N 0.25 deleterious(0) possibly_damaging(0.701) TCGA-44-7670-01 8 36691150 36691150 G T KCNU1 Missense_Mutation p.M395I 0.14 deleterious(0.01) benign(0.005) TCGA-44-7670-01 8 37693152 37693152 C A GPR124 Silent p.P638P 0.40 TCGA-44-7670-01 8 37698729 37698729 C A GPR124 Missense_Mutation p.P958H 0.31 deleterious(0.05) possibly_damaging(0.852) TCGA-44-7670-01 8 42940002 42940002 A T FNTA Missense_Mutation p.D332V 0.47 tolerated(0.12) benign(0.004) TCGA-44-7670-01 8 48772236 48772236 C T PRKDC Missense_Mutation p.G2047E 0.30 possibly_damaging(0.607) TCGA-44-7670-01 8 51306789 51306789 G T SNTG1 5'UTR 0.45 TCGA-44-7670-01 8 51569499 51569499 G T SNTG1 Nonsense_Mutation p.E294* 0.18 TCGA-44-7670-01 8 52733193 52733193 C A PCMTD1 Missense_Mutation p.Q264H 0.08 tolerated(0.13) benign(0.002) TCGA-44-7670-01 8 55539392 55539392 G C RP1 Missense_Mutation p.D984H 0.03 tolerated(0.81) benign(0.017) TCGA-44-7670-01 8 56675394 56675394 T G TMEM68 Missense_Mutation p.N42T 0.28 tolerated(0.61) benign(0.076) TCGA-44-7670-01 8 56675424 56675424 T G TMEM68 Missense_Mutation p.E32A 0.24 deleterious(0.01) benign(0.234) TCGA-44-7670-01 8 56675442 56675442 T C TMEM68 Missense_Mutation p.E26G 0.27 tolerated(0.3) benign(0.023) TCGA-44-7670-01 8 67405777 67405777 G T C8orf46 5'UTR 0.38 TCGA-44-7670-01 8 68049768 68049768 G T CSPP1 Missense_Mutation p.M630I 0.50 deleterious(0) possibly_damaging(0.885) TCGA-44-7670-01 8 71039095 71039095 C T NCOA2 Missense_Mutation p.R1290Q 0.36 tolerated(0.09) probably_damaging(0.999) TCGA-44-7670-01 8 72936059 72936059 G T TRPA1 Missense_Mutation p.Q1047K 0.24 deleterious(0) probably_damaging(0.967) TCGA-44-7670-01 8 73849198 73849198 T A KCNB2 Missense_Mutation p.S536R 0.39 deleterious_low_confidence(0) probably_damaging(0.944) TCGA-44-7670-01 8 73849614 73849614 C A KCNB2 Missense_Mutation p.T675N 0.29 tolerated_low_confidence(0.54) benign(0.148) TCGA-44-7670-01 8 77617213 77617213 C A ZFHX4 Missense_Mutation p.A297D 0.27 possibly_damaging(0.82) TCGA-44-7670-01 8 77768454 77768454 C A ZFHX4 Silent p.P3099P 0.31 TCGA-44-7670-01 8 77775757 77775757 G T ZFHX4 Silent p.G3269G 0.19 TCGA-44-7670-01 8 77776468 77776468 G A ZFHX4 Silent p.Q3506Q 0.61 TCGA-44-7670-01 8 81431522 81431522 G T ZBTB10 Missense_Mutation p.S792I 0.30 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 8 86048158 86048158 G T LRRCC1 Missense_Mutation p.R763S 0.26 deleterious(0) probably_damaging(0.928) TCGA-44-7670-01 8 92307860 92307860 G C SLC26A7 Missense_Mutation p.G136R 0.39 tolerated(0.05) probably_damaging(1) TCGA-44-7670-01 9 101536239 101536239 C A ANKS6 Missense_Mutation p.G581W 0.51 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-44-7670-01 9 102595026 102595026 T G NR4A3 Missense_Mutation p.V347G 0.69 deleterious(0) probably_damaging(0.997) TCGA-44-7670-01 9 103348308 103348308 A G MURC Missense_Mutation p.R224G 0.69 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 9 113198698 113198698 G A SVEP1 Nonsense_Mutation p.Q1576* 0.51 TCGA-44-7670-01 9 114371522 114371522 T A LRRC37A5P RNA 0.58 TCGA-44-7670-01 9 116060189 116060189 G A RNF183 Silent p.I92I 0.63 TCGA-44-7670-01 9 119903754 119903754 G A ASTN2 Intron 0.62 TCGA-44-7670-01 9 120476928 120476928 G T TLR4 3'UTR 0.78 TCGA-44-7670-01 9 125751575 125751575 G A RABGAP1 Splice_Site p.X197_splice 0.19 TCGA-44-7670-01 9 126794863 126794863 C A LHX2 Silent p.T366T 0.50 TCGA-44-7670-01 9 135102355 135102355 G T NTNG2 Missense_Mutation p.R326L 0.46 deleterious(0.02) benign(0.006) TCGA-44-7670-01 9 136324098 136324098 C T ADAMTS13 Silent p.I1360I 0.60 TCGA-44-7670-01 9 136656922 136656922 T A VAV2 Missense_Mutation p.S391C 0.63 tolerated(0.06) benign(0.013) TCGA-44-7670-01 9 137623971 137623971 C T COL5A1 Missense_Mutation p.P463S 0.54 probably_damaging(0.997) TCGA-44-7670-01 9 139379174 139379174 G T C9orf163 Missense_Mutation p.V92L 0.62 deleterious_low_confidence(0) benign(0.315) TCGA-44-7670-01 9 139913231 139913231 C A ABCA2 Nonsense_Mutation p.E587* 0.15 TCGA-44-7670-01 9 14737481 14737481 A T FREM1 Nonsense_Mutation p.C2151* 0.74 TCGA-44-7670-01 9 14824823 14824823 A T FREM1 Silent p.T683T 0.62 TCGA-44-7670-01 9 14857621 14857621 G A FREM1 Missense_Mutation p.P253L 0.18 deleterious(0) probably_damaging(0.988) TCGA-44-7670-01 9 19619672 19619672 G C SLC24A2 Missense_Mutation p.R330G 0.19 deleterious(0.05) benign(0.442) TCGA-44-7670-01 9 2110400 2110400 G A SMARCA2 Missense_Mutation p.D1147N 0.57 possibly_damaging(0.831) TCGA-44-7670-01 9 2115969 2115969 G T SMARCA2 Missense_Mutation p.G1202C 0.69 probably_damaging(0.965) TCGA-44-7670-01 9 2718331 2718331 T A KCNV2 Missense_Mutation p.C198S 0.25 deleterious(0) probably_damaging(1) TCGA-44-7670-01 9 2729457 2729457 C A KCNV2 Silent p.S456S 0.75 TCGA-44-7670-01 9 35869685 35869685 G A OR13J1 Silent p.F238F 0.38 TCGA-44-7670-01 9 35869736 35869736 G A OR13J1 Silent p.I221I 0.56 TCGA-44-7670-01 9 35869787 35869787 G T OR13J1 Silent p.I204I 0.50 TCGA-44-7670-01 9 35869804 35869804 G C OR13J1 Missense_Mutation p.L199V 0.43 deleterious(0.03) possibly_damaging(0.832) TCGA-44-7670-01 9 376232 376232 C T DOCK8 Missense_Mutation p.P711L 0.23 deleterious(0.01) probably_damaging(1) TCGA-44-7670-01 9 421071 421071 G T DOCK8 Silent p.R1382R 0.79 TCGA-44-7670-01 9 8499771 8499771 C T PTPRD Missense_Mutation p.R733H 0.68 deleterious(0.03) probably_damaging(0.987) TCGA-44-7670-01 9 99314142 99314142 C A CDC14B Missense_Mutation p.G145W 0.56 deleterious(0.01) probably_damaging(0.974) TCGA-44-7670-01 X 100078976 100078976 G T CSTF2 Silent p.V182V 0.28 TCGA-44-7670-01 X 100103634 100103634 G C NOX1 Missense_Mutation p.A518G 0.19 tolerated(0.06) possibly_damaging(0.819) TCGA-44-7670-01 X 101092590 101092590 G T NXF5 Missense_Mutation p.P319Q 0.31 tolerated(0.53) benign(0) TCGA-44-7670-01 X 101818974 101818974 G T NXF4 Intron 0.37 TCGA-44-7670-01 X 101911151 101911151 G A GPRASP1 Silent p.R770R 0.23 TCGA-44-7670-01 X 103268102 103268102 G C H2BFWT Missense_Mutation p.T44S 0.38 tolerated(0.24) benign(0.272) TCGA-44-7670-01 X 103349078 103349078 G A SLC25A53 Missense_Mutation p.T288M 0.30 deleterious(0) probably_damaging(1) TCGA-44-7670-01 X 105921584 105921584 G C CXorf57 3'UTR 0.46 TCGA-44-7670-01 X 106228325 106228325 C A MORC4 Splice_Site p.X225_splice 0.36 TCGA-44-7670-01 X 106808204 106808204 G C FRMPD3 Missense_Mutation p.V435L 0.29 tolerated(0.42) probably_damaging(0.994) TCGA-44-7670-01 X 107821200 107821200 G T COL4A5 Nonsense_Mutation p.G210* 0.23 TCGA-44-7670-01 X 110439096 110439096 C A PAK3 Missense_Mutation p.H415Q 0.24 deleterious(0) possibly_damaging(0.45) TCGA-44-7670-01 X 110494896 110494896 A T CAPN6 Missense_Mutation p.D258E 0.12 tolerated(0.09) probably_damaging(0.918) TCGA-44-7670-01 X 11132993 11132993 G T HCCS Nonsense_Mutation p.E47* 0.36 TCGA-44-7670-01 X 11207050 11207050 C A ARHGAP6 Missense_Mutation p.R292M 0.31 deleterious(0) probably_damaging(0.98) TCGA-44-7670-01 X 117530973 117530973 G T WDR44 Missense_Mutation p.G365V 0.27 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 X 117959170 117959170 G T ZCCHC12 5'UTR 0.31 TCGA-44-7670-01 X 117960496 117960496 G T ZCCHC12 3'UTR 0.32 TCGA-44-7670-01 X 118140177 118140177 G T LONRF3 Missense_Mutation p.L503F 0.29 deleterious(0) probably_damaging(1) TCGA-44-7670-01 X 118717179 118717179 T A UBE2A Silent p.R140R 0.23 TCGA-44-7670-01 X 118892627 118892627 G A SOWAHD 5'UTR 0.33 TCGA-44-7670-01 X 119388309 119388309 G T ZBTB33 Missense_Mutation p.D347Y 0.38 tolerated(0.07) possibly_damaging(0.629) TCGA-44-7670-01 X 119438318 119438318 G T TMEM255A Silent p.S29S 0.31 TCGA-44-7670-01 X 119582867 119582867 G C LAMP2 Missense_Mutation p.L172V 0.28 tolerated(0.53) benign(0.003) TCGA-44-7670-01 X 119673217 119673217 T A CUL4B Silent p.V567V 0.25 TCGA-44-7670-01 X 120181692 120181692 C A GLUD2 Missense_Mutation p.H52N 0.42 tolerated(0.3) benign(0.001) TCGA-44-7670-01 X 120183091 120183091 C A GLUD2 Missense_Mutation p.A518D 0.33 deleterious(0) benign(0.097) TCGA-44-7670-01 X 122387172 122387172 G T GRIA3 Missense_Mutation p.R96I 0.23 deleterious(0) possibly_damaging(0.838) TCGA-44-7670-01 X 122616872 122616872 G T GRIA3 Nonsense_Mutation p.G888* 0.28 TCGA-44-7670-01 X 123191804 123191804 G T STAG2 Missense_Mutation p.V465F 0.17 deleterious(0) probably_damaging(0.983) TCGA-44-7670-01 X 123202495 123202495 G T STAG2 Missense_Mutation p.V783F 0.29 tolerated(0.07) benign(0.083) TCGA-44-7670-01 X 125685683 125685683 C G DCAF12L1 Silent p.L303L 0.19 TCGA-44-7670-01 X 125686465 125686465 T A DCAF12L1 Missense_Mutation p.R43W 0.19 deleterious(0) possibly_damaging(0.766) TCGA-44-7670-01 X 128633753 128633753 C G SMARCA1 Missense_Mutation p.K411N 0.37 deleterious(0) probably_damaging(0.997) TCGA-44-7670-01 X 128692702 128692702 C T OCRL Missense_Mutation p.P178S 0.28 tolerated(0.11) probably_damaging(0.999) TCGA-44-7670-01 X 129063311 129063311 G T UTP14A Splice_Site p.X682_splice 0.28 TCGA-44-7670-01 X 129499558 129499558 C T SLC25A14 Missense_Mutation p.P255S 0.27 deleterious(0) probably_damaging(0.936) TCGA-44-7670-01 X 129759372 129759372 G A ENOX2 Silent p.T583T 0.26 TCGA-44-7670-01 X 129799677 129799677 T A ENOX2 Silent p.A347A 0.22 TCGA-44-7670-01 X 130409233 130409233 G A IGSF1 Missense_Mutation p.A1076V 0.30 tolerated(0.21) benign(0.028) TCGA-44-7670-01 X 132548940 132548940 G T GPC4 Silent p.A18A 0.33 TCGA-44-7670-01 X 132548941 132548941 G T GPC4 Missense_Mutation p.A18D 0.34 tolerated(0.13) benign(0.342) TCGA-44-7670-01 X 134025544 134025544 C A MOSPD1 Missense_Mutation p.S192I 0.27 deleterious(0) probably_damaging(0.965) TCGA-44-7670-01 X 135288703 135288703 A T FHL1 Missense_Mutation p.N38Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 X 135593100 135593100 C G HTATSF1 Missense_Mutation p.A399G 0.25 tolerated(0.29) benign(0.001) TCGA-44-7670-01 X 136112472 136112472 A T GPR101 Nonsense_Mutation p.Y454* 0.37 TCGA-44-7670-01 X 138642944 138642944 C A F9 Silent p.I256I 0.31 TCGA-44-7670-01 X 138644187 138644187 C A F9 Missense_Mutation p.S448Y 0.30 deleterious(0) probably_damaging(1) TCGA-44-7670-01 X 140995862 140995862 T A MAGEC1 Nonsense_Mutation p.L891* 0.27 TCGA-44-7670-01 X 140996688 140996688 G T MAGEC1 3'UTR 0.61 TCGA-44-7670-01 X 148627134 148627134 C A CXorf40A Intron 0.23 TCGA-44-7670-01 X 148797683 148797683 C A MAGEA11 Silent p.S179S 0.35 TCGA-44-7670-01 X 149638775 149638775 G T MAMLD1 Missense_Mutation p.L285F 0.24 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 X 149639337 149639337 C A MAMLD1 Missense_Mutation p.Q473K 0.23 deleterious(0.03) possibly_damaging(0.881) TCGA-44-7670-01 X 151814002 151814002 G T GABRQ Missense_Mutation p.V85L 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-44-7670-01 X 152612745 152612745 G T ZNF275 Missense_Mutation p.R201M 0.44 deleterious(0) probably_damaging(0.999) TCGA-44-7670-01 X 152981071 152981071 C T BCAP31 Missense_Mutation p.M156I 0.30 tolerated(0.42) benign(0.028) TCGA-44-7670-01 X 15301747 15301747 T A ASB11 Silent p.P284P 0.26 TCGA-44-7670-01 X 153039404 153039404 T G PLXNB3 Missense_Mutation p.F1147V 0.17 deleterious(0.04) probably_damaging(0.991) TCGA-44-7670-01 X 153132121 153132121 C A L1CAM Missense_Mutation p.G805V 0.24 deleterious(0) probably_damaging(1) TCGA-44-7670-01 X 153132925 153132925 T C L1CAM Missense_Mutation p.T675A 0.21 tolerated(0.82) benign(0.003) TCGA-44-7670-01 X 153247610 153247610 G A TMEM187 Missense_Mutation p.V33M 0.26 deleterious(0.01) possibly_damaging(0.888) TCGA-44-7670-01 X 153608718 153608718 C - EMD Frame_Shift_Del p.H131Ifs*106 0.32 TCGA-44-7670-01 X 153670947 153670947 G T GDI1 Missense_Mutation p.M424I 0.19 tolerated(1) benign(0.001) TCGA-44-7670-01 X 153996890 153996890 G T DKC1 Intron 0.25 TCGA-44-7670-01 X 154157794 154157794 G T F8 Missense_Mutation p.T1424N 0.37 tolerated(0.08) benign(0.009) TCGA-44-7670-01 X 154493454 154493454 G T RAB39B Silent p.T40T 0.33 TCGA-44-7670-01 X 15607532 15607532 C A ACE2 Missense_Mutation p.G211W 0.28 tolerated(0.19) benign(0.015) TCGA-44-7670-01 X 1742071 1742071 C G ASMT Missense_Mutation p.L37V 0.29 deleterious(0) probably_damaging(0.996) TCGA-44-7670-01 X 17818977 17818977 G C RAI2 Missense_Mutation p.S385C 0.14 deleterious(0) unknown(0) TCGA-44-7670-01 X 18221737 18221737 C A BEND2 Missense_Mutation p.R264L 0.26 tolerated(0.17) benign(0.039) TCGA-44-7670-01 X 18646665 18646665 C A CDKL5 Missense_Mutation p.Q891K 0.29 deleterious_low_confidence(0) benign(0.042) TCGA-44-7670-01 X 19392632 19392632 G C MAP3K15 Missense_Mutation p.N912K 0.22 tolerated(0.39) benign(0.021) TCGA-44-7670-01 X 19392723 19392723 C T MAP3K15 Missense_Mutation p.R882Q 0.37 tolerated(0.4) possibly_damaging(0.473) TCGA-44-7670-01 X 21627666 21627666 G T CNKSR2 Nonsense_Mutation p.E875* 0.34 TCGA-44-7670-01 X 22051130 22051130 G C PHEX Missense_Mutation p.A3P 0.24 tolerated_low_confidence(0.11) benign(0) TCGA-44-7670-01 X 2407570 2407570 C A ZBED1 Silent p.L397L 0.61 TCGA-44-7670-01 X 24751887 24751887 A G POLA1 Missense_Mutation p.K590R 0.22 tolerated(0.54) benign(0.016) TCGA-44-7670-01 X 2712644 2712644 G T XG Nonsense_Mutation p.G108* 0.28 TCGA-44-7670-01 X 2773087 2773087 G A GYG2 Silent p.P157P 0.30 TCGA-44-7670-01 X 27766228 27766228 G T DCAF8L2 Missense_Mutation p.G406C 0.33 deleterious(0) probably_damaging(0.993) TCGA-44-7670-01 X 27766229 27766229 G T DCAF8L2 Missense_Mutation p.G406V 0.34 deleterious(0) probably_damaging(0.986) TCGA-44-7670-01 X 27998524 27998524 C A DCAF8L1 Missense_Mutation p.V310F 0.34 deleterious(0.01) benign(0.177) TCGA-44-7670-01 X 30254298 30254298 C A MAGEB3 Missense_Mutation p.A86D 0.39 tolerated(0.1) benign(0.018) TCGA-44-7670-01 X 30260473 30260473 C T MAGEB4 Missense_Mutation p.A74V 0.19 tolerated(0.07) benign(0.159) TCGA-44-7670-01 X 30849675 30849675 T A TAB3 Missense_Mutation p.T670S 0.23 tolerated(0.73) benign(0.005) TCGA-44-7670-01 X 31279119 31279119 G T DMD Missense_Mutation p.T3080K 0.23 benign(0.194) TCGA-44-7670-01 X 32366641 32366641 G A DMD Missense_Mutation p.S1777F 0.26 possibly_damaging(0.683) TCGA-44-7670-01 X 32632420 32632420 C G DMD Missense_Mutation p.K494N 0.29 possibly_damaging(0.888) TCGA-44-7670-01 X 32717312 32717312 C A DMD Nonsense_Mutation p.E250* 0.26 TCGA-44-7670-01 X 34961615 34961615 C A FAM47B Missense_Mutation p.L223I 0.31 tolerated(0.12) possibly_damaging(0.543) TCGA-44-7670-01 X 36117970 36117993 ACAGATGTATTTCTACAGATATAC - CHDC2 In_Frame_Del p.T276_Y283del 0.13 TCGA-44-7670-01 X 37027912 37027912 G T FAM47C Nonsense_Mutation p.E477* 0.26 TCGA-44-7670-01 X 38150672 38150672 C T RPGR Missense_Mutation p.G494R 0.24 probably_damaging(0.997) TCGA-44-7670-01 X 47308861 47308861 C A ZNF41 Missense_Mutation p.G103V 0.27 tolerated(0.44) possibly_damaging(0.475) TCGA-44-7670-01 X 47755298 47755298 C A ZNF81 Missense_Mutation p.P79Q 0.38 deleterious(0.03) possibly_damaging(0.726) TCGA-44-7670-01 X 48754135 48754135 C T TIMM17B Nonsense_Mutation p.W11* 0.24 TCGA-44-7670-01 X 48772330 48772330 G C PIM2 Missense_Mutation p.L188V 0.15 tolerated(0.16) benign(0.029) TCGA-44-7670-01 X 48923039 48923039 G T CCDC120 Missense_Mutation p.W246L 0.24 tolerated(1) possibly_damaging(0.776) TCGA-44-7670-01 X 49022561 49022561 C A MAGIX Silent p.A276A 0.26 TCGA-44-7670-01 X 49033386 49033386 G T PRICKLE3 Missense_Mutation p.A374D 0.27 tolerated(0.09) benign(0.002) TCGA-44-7670-01 X 49774388 49774388 C A CLCN5 Intron 0.16 TCGA-44-7670-01 X 50051956 50051956 A T CCNB3 Missense_Mutation p.M263L 0.24 tolerated(0.36) benign(0.205) TCGA-44-7670-01 X 50051958 50051958 G T CCNB3 Missense_Mutation p.M263I 0.23 tolerated(0.45) benign(0.297) TCGA-44-7670-01 X 51150614 51150614 G A CXorf67 Missense_Mutation p.R249H 0.18 tolerated(0.41) possibly_damaging(0.579) TCGA-44-7670-01 X 53284096 53284096 C T IQSEC2 Silent p.R339R 0.42 TCGA-44-7670-01 X 54334508 54334508 A G WNK3 Silent p.T312T 0.29 TCGA-44-7670-01 X 54337693 54337693 C A WNK3 Missense_Mutation p.R190I 0.24 deleterious(0) probably_damaging(1) TCGA-44-7670-01 X 54574706 54574706 G T GNL3L Silent p.L225L 0.35 TCGA-44-7670-01 X 55033666 55033666 G T APEX2 Missense_Mutation p.R452L 0.22 tolerated(0.41) benign(0.001) TCGA-44-7670-01 X 55248250 55248250 T C PAGE5 Silent p.D64D 0.42 TCGA-44-7670-01 X 55744767 55744767 G A RRAGB Missense_Mutation p.E3K 0.22 deleterious_low_confidence(0.01) unknown(0) TCGA-44-7670-01 X 57619478 57619478 C - ZXDB Frame_Shift_Del p.F334Lfs*22 0.21 TCGA-44-7670-01 X 57620102 57620102 G A ZXDB Missense_Mutation p.D541N 0.23 deleterious(0.02) possibly_damaging(0.467) TCGA-44-7670-01 X 63411982 63411982 C A AMER1 Missense_Mutation p.E395D 0.36 tolerated(0.12) benign(0.058) TCGA-44-7670-01 X 64738059 64738059 C A LAS1L Missense_Mutation p.V579L 0.36 tolerated(0.29) benign(0.027) TCGA-44-7670-01 X 66941747 66941747 G A AR Nonsense_Mutation p.W797* 0.35 TCGA-44-7670-01 X 67940832 67940832 T A STARD8 Missense_Mutation p.S706T 0.24 tolerated(0.11) benign(0.098) TCGA-44-7670-01 X 68381849 68381849 G - PJA1 Frame_Shift_Del p.S412Afs*72 0.27 TCGA-44-7670-01 X 69455968 69455968 C A AWAT1 Silent p.I78I 0.36 TCGA-44-7670-01 X 69849524 69849524 A T TEX11 Missense_Mutation p.D530E 0.26 tolerated(0.69) benign(0.003) TCGA-44-7670-01 X 70146814 70146814 T G SLC7A3 Missense_Mutation p.K455T 0.14 tolerated(0.32) benign(0.024) TCGA-44-7670-01 X 70327653 70327653 G T IL2RG Missense_Mutation p.A348D 0.43 deleterious_low_confidence(0.05) benign(0.065) TCGA-44-7670-01 X 70466306 70466306 G A ZMYM3 Silent p.P823P 0.44 TCGA-44-7670-01 X 70824130 70824130 C A ACRC Missense_Mutation p.P335T 0.33 unknown(0) TCGA-44-7670-01 X 71360053 71360053 C G NHSL2 Silent p.V885V 0.19 TCGA-44-7670-01 X 72433876 72433876 T A NAP1L2 Missense_Mutation p.R151S 0.31 deleterious(0) probably_damaging(0.991) TCGA-44-7670-01 X 73043709 73043709 G C XIST RNA 0.25 TCGA-44-7670-01 X 73048957 73048957 G A XIST RNA 0.11 TCGA-44-7670-01 X 73744385 73744385 A C SLC16A2 Missense_Mutation p.K256T 0.16 tolerated(0.51) benign(0.018) TCGA-44-7670-01 X 76938718 76938718 G T ATRX Nonsense_Mutation p.S677* 0.27 TCGA-44-7670-01 X 78622626 78622626 G A ITM2A Silent p.V29V 0.25 TCGA-44-7670-01 X 85128136 85128136 C A CHM Missense_Mutation p.C564F 0.25 tolerated(0.37) benign(0.202) TCGA-44-7670-01 X 91090514 91090514 T A PCDH11X Nonsense_Mutation p.L4* 0.44 TCGA-44-7670-01 X 91090671 91090671 C A PCDH11X Silent p.S56S 0.35 TCGA-44-7670-01 X 91131909 91131909 G C PCDH11X Missense_Mutation p.G224R 0.25 deleterious(0) probably_damaging(1) TCGA-44-7670-01 X 94318156 94318156 C A MIR548M RNA 0.45 TCGA-44-7670-01 X 95993694 95993694 C T DIAPH2 Missense_Mutation p.P92L 0.22 tolerated(0.15) unknown(0) TCGA-44-7670-01 X 99662048 99662048 G T PCDH19 Nonsense_Mutation p.Y516* 0.25 TCGA-44-7670-01 X 99849302 99849302 C A TNMD Silent p.I122I 0.43 TCGA-44-7671-01 10 100374727 100374727 C G HPSE2 Silent p.V418V 0.31 TCGA-44-7671-01 10 105978586 105978586 C A WDR96 Intron 0.25 TCGA-44-7671-01 10 106037800 106037800 C T GSTO2 Missense_Mutation p.P98S 0.38 deleterious(0.03) possibly_damaging(0.846) TCGA-44-7671-01 10 115636548 115636548 C T NHLRC2 Silent p.D200D 0.37 TCGA-44-7671-01 10 119013583 119013583 C A SLC18A2 Missense_Mutation p.A183D 0.36 deleterious(0.02) benign(0.367) TCGA-44-7671-01 10 119013584 119013584 C A SLC18A2 Silent p.A183A 0.36 TCGA-44-7671-01 10 120967402 120967402 C G GRK5 5'UTR 0.25 TCGA-44-7671-01 10 121275037 121275037 T C RGS10 Missense_Mutation p.Q128R 0.30 tolerated(0.5) possibly_damaging(0.802) TCGA-44-7671-01 10 133753657 133753657 G A PPP2R2D Nonsense_Mutation p.W76* 0.49 TCGA-44-7671-01 10 17275634 17275634 G T VIM Nonsense_Mutation p.E225* 0.43 TCGA-44-7671-01 10 18270306 18270306 G C SLC39A12 Missense_Mutation p.K330N 0.28 deleterious(0) probably_damaging(0.992) TCGA-44-7671-01 10 18270307 18270307 G T SLC39A12 Nonsense_Mutation p.E331* 0.28 TCGA-44-7671-01 10 31810827 31810827 A C ZEB1 Missense_Mutation p.E856A 0.33 tolerated(0.37) possibly_damaging(0.665) TCGA-44-7671-01 10 47087797 47087797 G T NPY4R Silent p.L338L 0.21 TCGA-44-7671-01 10 48413967 48413967 C G GDF2 Missense_Mutation p.E301Q 0.38 tolerated(0.32) benign(0.038) TCGA-44-7671-01 10 52389893 52389893 G T RP11-50E11.3 RNA 0.32 TCGA-44-7671-01 10 72434578 72434578 C T ADAMTS14 Silent p.L117L 0.43 TCGA-44-7671-01 10 75532234 75532234 G T FUT11 Missense_Mutation p.R48L 0.12 tolerated(0.21) benign(0.013) TCGA-44-7671-01 10 91404709 91404709 C T PANK1 Silent p.E117E 0.30 TCGA-44-7671-01 11 101375428 101375428 C G TRPC6 Missense_Mutation p.R91P 0.24 tolerated(0.32) possibly_damaging(0.481) TCGA-44-7671-01 11 101375429 101375429 G A TRPC6 Missense_Mutation p.R91C 0.23 deleterious(0.02) benign(0.003) TCGA-44-7671-01 11 113295259 113295259 T A DRD2 Missense_Mutation p.T39S 0.36 deleterious(0) benign(0.053) TCGA-44-7671-01 11 125778353 125778353 G A DDX25 Silent p.V154V 0.40 TCGA-44-7671-01 11 1267214 1267214 C T MUC5B Missense_Mutation p.T3035I 0.35 unknown(0) TCGA-44-7671-01 11 129321374 129321374 A T BARX2 3'UTR 0.40 TCGA-44-7671-01 11 1858580 1858580 C T SYT8 Silent p.P375P 0.27 TCGA-44-7671-01 11 2167657 2167657 C T INS-IGF2 3'Flank 0.12 TCGA-44-7671-01 11 31312227 31312227 A C DCDC1 Missense_Mutation p.H309Q 0.43 tolerated(0.19) benign(0.109) TCGA-44-7671-01 11 3714511 3714511 G T NUP98 Missense_Mutation p.P1421Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-44-7671-01 11 4661103 4661103 G A OR51D1 Missense_Mutation p.G28D 0.47 deleterious(0) probably_damaging(0.988) TCGA-44-7671-01 11 4929367 4929367 C A OR51A7 Silent p.T256T 0.45 TCGA-44-7671-01 11 49597924 49597924 G T RP11-707M1.1 RNA 0.20 TCGA-44-7671-01 11 50003155 50003155 C T OR4C12 Missense_Mutation p.A295T 0.19 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-44-7671-01 11 55065640 55065640 G T TRIM51HP RNA 0.32 TCGA-44-7671-01 11 55762023 55762023 G C OR5F1 Missense_Mutation p.L27V 0.41 deleterious(0) benign(0.334) TCGA-44-7671-01 11 56237637 56237637 G C OR5M3 Missense_Mutation p.L113V 0.31 deleterious(0.01) probably_damaging(0.977) TCGA-44-7671-01 11 57317484 57317484 G A SMTNL1 Missense_Mutation p.V480M 0.30 tolerated(0.18) possibly_damaging(0.843) TCGA-44-7671-01 11 64694309 64694309 G A PPP2R5B Missense_Mutation p.E109K 0.18 deleterious(0) probably_damaging(0.937) TCGA-44-7671-01 11 65811010 65811010 C A GAL3ST3 Missense_Mutation p.E88D 0.17 tolerated(0.07) probably_damaging(0.998) TCGA-44-7671-01 11 66264796 66264796 C T DPP3 Silent p.L576L 0.28 TCGA-44-7671-01 11 76853808 76853808 C A MYO7A Silent p.I24I 0.21 TCGA-44-7671-01 11 88338066 88338066 T C GRM5 Missense_Mutation p.Y405C 0.16 deleterious(0) probably_damaging(1) TCGA-44-7671-01 11 99941210 99941210 C A CNTN5 Missense_Mutation p.P406H 0.20 deleterious(0.01) benign(0.409) TCGA-44-7671-01 12 104393232 104393232 C T GLT8D2 Silent p.P115P 0.60 TCGA-44-7671-01 12 112516501 112516501 C A NAA25 Silent p.L174L 0.57 TCGA-44-7671-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.67 deleterious(0.04) probably_damaging(0.993) TCGA-44-7671-01 12 39734815 39734815 T A KIF21A Missense_Mutation p.Q668L 0.52 deleterious(0) probably_damaging(0.987) TCGA-44-7671-01 12 52885323 52885323 C T KRT6A Silent p.V246V 0.48 TCGA-44-7671-01 12 66308924 66308924 G T HMGA2 Intron 0.73 TCGA-44-7671-01 12 96350688 96350688 G A AMDHD1 Missense_Mutation p.E179K 0.04 tolerated(0.48) benign(0.005) TCGA-44-7671-01 13 111372015 111372015 C T ING1 Silent p.A335A 0.36 TCGA-44-7671-01 13 113439475 113439475 C T ATP11A Silent p.D22D 0.36 TCGA-44-7671-01 13 113536255 113536255 A T ATP11A 3'UTR 0.36 TCGA-44-7671-01 13 114288852 114288852 G T TFDP1 Nonsense_Mutation p.E208* 0.34 TCGA-44-7671-01 13 30062124 30062124 C A MTUS2 Missense_Mutation p.H1173N 0.27 tolerated(0.12) possibly_damaging(0.615) TCGA-44-7671-01 13 32745188 32745188 A C FRY Silent p.A644A 0.32 TCGA-44-7671-01 13 33247430 33247430 G A PDS5B Silent p.E261E 0.33 TCGA-44-7671-01 13 45149475 45149475 T A TSC22D1 Missense_Mutation p.S246C 0.52 deleterious(0.02) possibly_damaging(0.503) TCGA-44-7671-01 13 70535565 70535565 C T KLHL1 Missense_Mutation p.S231N 0.43 deleterious(0) probably_damaging(0.999) TCGA-44-7671-01 13 76111957 76111957 C T COMMD6 5'UTR 0.32 TCGA-44-7671-01 13 80911269 80911269 T A SPRY2 Missense_Mutation p.Y191F 0.38 tolerated(0.58) benign(0.328) TCGA-44-7671-01 13 84453805 84453805 C A SLITRK1 Missense_Mutation p.S613I 0.30 deleterious(0.04) benign(0.374) TCGA-44-7671-01 14 101416185 101416185 G A SNORD114-1 RNA 0.33 TCGA-44-7671-01 14 21360027 21360027 G A RNASE3 Missense_Mutation p.R61Q 0.50 tolerated(0.65) benign(0.006) TCGA-44-7671-01 14 24624848 24624848 G C RNF31 Missense_Mutation p.E814Q 0.28 tolerated(0.16) possibly_damaging(0.777) TCGA-44-7671-01 14 38679809 38679809 G A SSTR1 3'UTR 0.35 TCGA-44-7671-01 14 56746457 56746457 G A PELI2 Missense_Mutation p.V91M 0.38 deleterious(0) probably_damaging(0.975) TCGA-44-7671-01 14 64634321 64634321 C A SYNE2 Missense_Mutation p.S5623R 0.27 possibly_damaging(0.603) TCGA-44-7671-01 14 64634322 64634322 C T SYNE2 Missense_Mutation p.L5624F 0.29 benign(0.244) TCGA-44-7671-01 14 79175866 79175866 G C NRXN3 Missense_Mutation p.V137L 0.26 tolerated(0.43) probably_damaging(0.937) TCGA-44-7671-01 14 81743750 81743750 G T STON2 Silent p.T635T 0.50 TCGA-44-7671-01 14 86088015 86088015 A T FLRT2 Missense_Mutation p.S53C 0.37 deleterious(0.01) probably_damaging(0.95) TCGA-44-7671-01 15 100331207 100331207 G T AC090825.1 5'Flank 0.24 TCGA-44-7671-01 15 100331208 100331208 C A AC090825.1 5'Flank 0.24 TCGA-44-7671-01 15 102358657 102358657 A C OR4F15 Missense_Mutation p.K90Q 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.721) TCGA-44-7671-01 15 22473040 22473040 G T IGHV4OR15-8 Silent p.P77P 0.11 TCGA-44-7671-01 15 32929036 32929036 A G ARHGAP11A Missense_Mutation p.I688V 0.30 tolerated(0.45) benign(0.004) TCGA-44-7671-01 15 34145788 34145788 A G RYR3 Silent p.A4568A 0.21 TCGA-44-7671-01 15 34673568 34673568 C A GOLGA8A 3'UTR 0.20 TCGA-44-7671-01 15 42058514 42058514 A T MGA Missense_Mutation p.K2745I 0.54 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-44-7671-01 15 42172497 42172497 C A SPTBN5 Missense_Mutation p.R891L 0.43 benign(0.004) TCGA-44-7671-01 15 43827131 43827131 T A PPIP5K1 Missense_Mutation p.K1348M 0.56 deleterious_low_confidence(0) benign(0.195) TCGA-44-7671-01 15 54685309 54685309 C G UNC13C Missense_Mutation p.P1593A 0.44 tolerated_low_confidence(0.08) benign(0.014) TCGA-44-7671-01 15 59499557 59499557 C A LDHAL6B Missense_Mutation p.L140I 0.49 tolerated(0.6) benign(0.16) TCGA-44-7671-01 15 64426931 64426937 GCGGGAG - SNX1 Frame_Shift_Del p.R431Pfs*28 0.43 TCGA-44-7671-01 15 69339834 69339834 G A NOX5 Missense_Mutation p.G592S 0.21 deleterious(0.02) possibly_damaging(0.84) TCGA-44-7671-01 15 74178467 74178467 C A TBC1D21 Missense_Mutation p.L210I 0.43 deleterious(0) probably_damaging(0.967) TCGA-44-7671-01 15 78909405 78909405 G A CHRNA3 Missense_Mutation p.A113V 0.52 deleterious(0.02) possibly_damaging(0.472) TCGA-44-7671-01 15 91421523 91421523 G T FURIN Missense_Mutation p.G277W 0.54 deleterious(0) probably_damaging(1) TCGA-44-7671-01 15 91512795 91512795 G A PRC1 Missense_Mutation p.A544V 0.25 tolerated(0.49) benign(0.024) TCGA-44-7671-01 15 92647611 92647611 T G SLCO3A1 Missense_Mutation p.F283C 0.26 deleterious(0) probably_damaging(0.999) TCGA-44-7671-01 15 94841680 94841680 C T MCTP2 Silent p.A62A 0.30 TCGA-44-7671-01 16 29848101 29848101 G T MVP Missense_Mutation p.R244L 0.40 tolerated(0.05) benign(0.298) TCGA-44-7671-01 16 3014592 3014592 C A KREMEN2 Nonsense_Mutation p.S24* 0.20 TCGA-44-7671-01 16 50707185 50707185 C T SNX20 3'UTR 0.55 TCGA-44-7671-01 16 51173592 51173592 G A SALL1 Silent p.S847S 0.49 TCGA-44-7671-01 16 53515618 53515618 A T RBL2 Silent p.V1040V 0.35 TCGA-44-7671-01 16 65345315 65345315 A T LINC00922 Splice_Site 0.30 TCGA-44-7671-01 16 66426430 66426430 C A CDH5 Intron 0.27 TCGA-44-7671-01 16 677653 677653 C T RAB40C 3'UTR 0.50 TCGA-44-7671-01 17 10309514 10309514 C A MYH8 Intron 0.25 TCGA-44-7671-01 17 11865532 11865532 A G DNAH9 Missense_Mutation p.I4398V 0.53 benign(0.012) TCGA-44-7671-01 17 15406338 15406338 G A TVP23C Missense_Mutation p.P224L 0.23 deleterious(0.01) benign(0.014) TCGA-44-7671-01 17 21731316 21731316 A T UBBP4 Intron 0.49 TCGA-44-7671-01 17 34417419 34417419 G A CCL3 5'UTR 0.45 TCGA-44-7671-01 17 46675197 46675197 A G HOXB6 Missense_Mutation p.S106P 0.20 tolerated(0.34) benign(0.001) TCGA-44-7671-01 17 55195744 55195744 G A AKAP1 Missense_Mutation p.D835N 0.49 deleterious(0.01) benign(0.009) TCGA-44-7671-01 17 61895427 61895427 G A DDX42 Missense_Mutation p.S829N 0.27 tolerated_low_confidence(1) benign(0.001) TCGA-44-7671-01 17 68171198 68171198 C A KCNJ2 Silent p.T6T 0.37 TCGA-44-7671-01 17 71241367 71241367 A C C17orf80 Intron 0.50 TCGA-44-7671-01 17 74732914 74732914 T C SRSF2 Missense_Mutation p.Y110C 0.28 tolerated_low_confidence(0.05) unknown(0) TCGA-44-7671-01 18 21461922 21461922 G T LAMA3 Missense_Mutation p.G1712V 0.35 probably_damaging(0.999) TCGA-44-7671-01 18 31319308 31319308 C - ASXL3 Frame_Shift_Del p.T647Kfs*30 0.25 TCGA-44-7671-01 18 33704551 33704551 C A SLC39A6 Missense_Mutation p.R301I 0.23 deleterious(0.02) benign(0.445) TCGA-44-7671-01 18 34320650 34320650 A T FHOD3 Missense_Mutation p.E1028V 0.37 deleterious(0) probably_damaging(1) TCGA-44-7671-01 18 580499 580499 C A CETN1 Missense_Mutation p.Q31K 0.56 tolerated(0.09) benign(0.007) TCGA-44-7671-01 18 67992908 67992908 A T SOCS6 Missense_Mutation p.H335L 0.23 deleterious(0.02) benign(0.118) TCGA-44-7671-01 18 71793305 71793305 T A FBXO15 Missense_Mutation p.N273Y 0.23 tolerated(0.06) benign(0.231) TCGA-44-7671-01 19 10602746 10602746 G A KEAP1 Missense_Mutation p.P278S 0.63 deleterious(0) possibly_damaging(0.822) TCGA-44-7671-01 19 1221261 1221261 A T STK11 Nonsense_Mutation p.K262* 0.76 TCGA-44-7671-01 19 15484083 15484083 C A AKAP8 Missense_Mutation p.R147L 0.59 deleterious(0) possibly_damaging(0.866) TCGA-44-7671-01 19 19626988 19626988 A G NDUFA13 5'UTR 0.08 TCGA-44-7671-01 19 31040381 31040381 C T ZNF536 Silent p.S1285S 0.41 TCGA-44-7671-01 19 36128460 36128460 C A RBM42 3'UTR 0.50 TCGA-44-7671-01 19 38189117 38189117 G T ZNF607 Missense_Mutation p.H639N 0.48 deleterious(0.01) probably_damaging(0.983) TCGA-44-7671-01 19 45488522 45488522 G T CLPTM1 Silent p.L211L 0.50 TCGA-44-7671-01 19 48602932 48602932 C A PLA2G4C Missense_Mutation p.R158I 0.72 deleterious(0) probably_damaging(0.923) TCGA-44-7671-01 19 48833629 48833629 G - EMP3 Frame_Shift_Del p.G133Afs*? 0.40 TCGA-44-7671-01 19 49224080 49224080 C T RASIP1 Missense_Mutation p.G956E 0.70 deleterious_low_confidence(0.01) possibly_damaging(0.831) TCGA-44-7671-01 19 57176448 57176448 A T ZNF835 Missense_Mutation p.V40E 0.62 tolerated(0.36) benign(0) TCGA-44-7671-01 19 9082881 9082881 G - MUC16 Frame_Shift_Del p.T2979Lfs*26 0.41 TCGA-44-7671-01 1 12942050 12942050 G T PRAMEF4 Missense_Mutation p.T167N 0.11 deleterious(0.04) probably_damaging(0.917) TCGA-44-7671-01 1 145561641 145561641 A G ANKRD35 Silent p.Q443Q 0.16 TCGA-44-7671-01 1 148932838 148932838 G A RP11-14N7.2 RNA 0.18 TCGA-44-7671-01 1 156203520 156203520 G T PMF1 Splice_Site p.X123_splice 0.36 TCGA-44-7671-01 1 156917973 156917973 C A ARHGEF11 Missense_Mutation p.R718M 0.27 deleterious(0) probably_damaging(0.959) TCGA-44-7671-01 1 157745565 157745565 C G FCRL2 Missense_Mutation p.D18H 0.14 deleterious(0) benign(0.136) TCGA-44-7671-01 1 158736044 158736044 C T OR6N1 Silent p.E143E 0.25 TCGA-44-7671-01 1 160849122 160849122 G T ITLN1 Silent p.V256V 0.34 TCGA-44-7671-01 1 163315514 163315514 G T NUF2 Missense_Mutation p.C285F 0.29 tolerated(0.78) benign(0.001) TCGA-44-7671-01 1 17033809 17033809 G T ESPNP RNA 0.10 TCGA-44-7671-01 1 170940953 170940974 AAGATCCCTCGATTGTAAAACA - MROH9 Frame_Shift_Del p.D183Hfs*38 0.38 TCGA-44-7671-01 1 172579150 172579150 G C SUCO Missense_Mutation p.Q1172H 0.13 tolerated(0.17) possibly_damaging(0.566) TCGA-44-7671-01 1 185932971 185932971 G T HMCN1 Missense_Mutation p.C681F 0.40 probably_damaging(0.996) TCGA-44-7671-01 1 190067402 190067402 G T BRINP3 Missense_Mutation p.L683M 0.40 deleterious(0.04) probably_damaging(0.997) TCGA-44-7671-01 1 206331277 206331277 G A CTSE 3'UTR 0.36 TCGA-44-7671-01 1 214557195 214557195 C G PTPN14 Missense_Mutation p.R668P 0.31 tolerated(0.34) possibly_damaging(0.652) TCGA-44-7671-01 1 228003938 228003938 C A PRSS38 Missense_Mutation p.A99E 0.33 deleterious(0) probably_damaging(1) TCGA-44-7671-01 1 22965531 22965531 C - C1QA Frame_Shift_Del p.P125Qfs*157 0.29 TCGA-44-7671-01 1 237880546 237880546 C T RYR2 Missense_Mutation p.R3458W 0.64 possibly_damaging(0.836) TCGA-44-7671-01 1 237880547 237880547 G C RYR2 Missense_Mutation p.R3458P 0.64 possibly_damaging(0.749) TCGA-44-7671-01 1 237947838 237947838 G T RYR2 Missense_Mutation p.V4276L 0.44 benign(0.001) TCGA-44-7671-01 1 248263049 248263049 C A OR2L13 Silent p.A124A 0.18 TCGA-44-7671-01 1 248263312 248263312 G T OR2L13 Missense_Mutation p.G212V 0.31 tolerated(1) probably_damaging(0.973) TCGA-44-7671-01 1 27480730 27480730 G C SLC9A1 Silent p.L32L 0.18 TCGA-44-7671-01 1 37307529 37307529 G A GRIK3 Silent p.F446F 0.06 TCGA-44-7671-01 1 45323445 45323445 C A EIF2B3 Missense_Mutation p.A413S 0.44 tolerated(0.06) benign(0.092) TCGA-44-7671-01 1 67000029 67000029 C A SGIP1 5'UTR 0.25 TCGA-44-7671-01 1 67263744 67263744 C A INSL5 Missense_Mutation p.L120F 0.19 tolerated(0.16) possibly_damaging(0.787) TCGA-44-7671-01 1 75065541 75065541 G C C1orf173 Missense_Mutation p.Q522E 0.19 deleterious(0) benign(0.31) TCGA-44-7671-01 1 89662846 89662846 A G GBP4 Missense_Mutation p.L61P 0.44 tolerated(0.05) benign(0.281) TCGA-44-7671-01 1 99156702 99156702 G A SNX7 Silent p.K145K 0.25 TCGA-44-7671-01 1 99203889 99203889 G T SNX7 Missense_Mutation p.D408Y 0.24 deleterious(0) probably_damaging(0.994) TCGA-44-7671-01 20 13055137 13055137 A T SPTLC3 Missense_Mutation p.H200L 0.41 tolerated(0.51) benign(0.155) TCGA-44-7671-01 20 23545488 23545488 C A CST9L 3'UTR 0.37 TCGA-44-7671-01 20 2774857 2774857 C A CPXM1 Silent p.R728R 0.30 TCGA-44-7671-01 20 36935979 36935979 G A BPI Silent p.Q51Q 0.30 TCGA-44-7671-01 20 39801184 39801184 G A PLCG1 Missense_Mutation p.R1010H 0.07 deleterious(0) probably_damaging(1) TCGA-44-7671-01 20 44682333 44682333 C A SLC12A5 Silent p.V911V 0.33 TCGA-44-7671-01 20 55206867 55206867 G T TFAP2C Missense_Mutation p.D181Y 0.35 deleterious(0) possibly_damaging(0.779) TCGA-44-7671-01 20 60551158 60551158 C T TAF4 3'UTR 0.33 TCGA-44-7671-01 21 10942750 10942750 T A TPTE Missense_Mutation p.T231S 0.15 tolerated(0.13) benign(0.281) TCGA-44-7671-01 21 31986046 31986046 C T KRTAP6-1 Missense_Mutation p.G60S 0.21 unknown(0) TCGA-44-7671-01 21 35469090 35469090 T A SLC5A3 Silent p.L531L 0.44 TCGA-44-7671-01 21 47970476 47970476 G T DIP2A Missense_Mutation p.Q886H 0.52 tolerated(0.09) probably_damaging(0.969) TCGA-44-7671-01 22 24964111 24964111 G C SNRPD3 Missense_Mutation p.G96R 0.39 deleterious(0.03) benign(0.072) TCGA-44-7671-01 22 24964112 24964112 G T SNRPD3 Missense_Mutation p.G96V 0.38 tolerated(0.08) benign(0.072) TCGA-44-7671-01 22 26747058 26747058 C A SEZ6L Silent p.T816T 0.35 TCGA-44-7671-01 22 31523954 31523954 G T INPP5J Missense_Mutation p.G234V 0.30 deleterious(0) probably_damaging(0.99) TCGA-44-7671-01 22 39479766 39479766 C A APOBEC3G Missense_Mutation p.F204L 0.42 tolerated(0.26) benign(0) TCGA-44-7671-01 22 44681338 44681338 G T KIAA1644 Missense_Mutation p.P190Q 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.865) TCGA-44-7671-01 22 45960816 45960816 G A FBLN1 Intron 0.38 TCGA-44-7671-01 22 46712020 46712020 G T GTSE1 Silent p.L381L 0.43 TCGA-44-7671-01 2 108881780 108881780 C A SULT1C3 Missense_Mutation p.S296R 0.29 deleterious(0) possibly_damaging(0.807) TCGA-44-7671-01 2 113742558 113742558 C - IL36G Frame_Shift_Del p.I149Sfs*3 0.25 TCGA-44-7671-01 2 113955142 113955142 G A PSD4 Silent p.T796T 0.43 TCGA-44-7671-01 2 131356303 131356303 C A CFC1 Missense_Mutation p.W53C 0.22 tolerated(0.08) probably_damaging(0.922) TCGA-44-7671-01 2 131486911 131486911 A T GPR148 Missense_Mutation p.T63S 0.45 tolerated(0.09) benign(0.187) TCGA-44-7671-01 2 133636466 133636466 C G NCKAP5 Missense_Mutation p.L201F 0.25 deleterious(0.01) probably_damaging(0.913) TCGA-44-7671-01 2 136562352 136562352 G A LCT Silent p.A1483A 0.21 TCGA-44-7671-01 2 141294160 141294160 C A LRP1B Silent p.L2544L 0.43 TCGA-44-7671-01 2 172965613 172965613 C G DLX2 Missense_Mutation p.E215D 0.16 deleterious(0.02) benign(0.092) TCGA-44-7671-01 2 175437061 175437061 T G WIPF1 Silent p.R158R 0.21 TCGA-44-7671-01 2 179396045 179396045 A T TTN Silent p.S35099S 0.45 TCGA-44-7671-01 2 179584097 179584097 C A TTN Missense_Mutation p.R8007L 0.25 TCGA-44-7671-01 2 185801006 185801006 G T ZNF804A Nonsense_Mutation p.E295* 0.52 TCGA-44-7671-01 2 187627263 187627263 C T FAM171B Nonsense_Mutation p.Q732* 0.05 TCGA-44-7671-01 2 198570930 198570930 G T MARS2 Silent p.P267P 0.37 TCGA-44-7671-01 2 201436615 201436615 G C SGOL2 Missense_Mutation p.E516Q 0.49 deleterious(0.02) possibly_damaging(0.795) TCGA-44-7671-01 2 219452361 219452361 A C RQCD1 Silent p.T161T 0.32 TCGA-44-7671-01 2 220432677 220432677 G A OBSL1 Missense_Mutation p.R433C 0.20 deleterious(0) probably_damaging(0.932) TCGA-44-7671-01 2 223160317 223160317 G T PAX3 Silent p.G127G 0.23 TCGA-44-7671-01 2 65540530 65540530 C A SPRED2 3'UTR 0.46 TCGA-44-7671-01 3 112993230 112993230 C A BOC Missense_Mutation p.P415T 0.27 tolerated(0.55) benign(0.044) TCGA-44-7671-01 3 121547406 121547406 G A IQCB1 Silent p.L58L 0.35 TCGA-44-7671-01 3 124996612 124996612 T - ZNF148 Frame_Shift_Del p.I209Yfs*26 0.29 TCGA-44-7671-01 3 130284398 130284398 C A COL6A6 Silent p.R408R 0.33 TCGA-44-7671-01 3 13860915 13860915 C T WNT7A Silent p.L192L 0.24 TCGA-44-7671-01 3 142272808 142272808 T A ATR Missense_Mutation p.E797D 0.25 tolerated(0.54) benign(0.001) TCGA-44-7671-01 3 147108741 147108741 C G ZIC4 Silent p.A377A 0.40 TCGA-44-7671-01 3 16237266 16237266 G A GALNT15 Splice_Site p.X180_splice 0.23 TCGA-44-7671-01 3 167813020 167813020 C A GOLIM4 Silent p.L18L 0.36 TCGA-44-7671-01 3 180372601 180372601 A T CCDC39 Nonsense_Mutation p.C293* 0.38 TCGA-44-7671-01 3 36779060 36779060 T C DCLK3 Missense_Mutation p.D364G 0.25 deleterious(0) probably_damaging(0.984) TCGA-44-7671-01 3 62063885 62063885 G A PTPRG Missense_Mutation p.A190T 0.30 deleterious(0.05) probably_damaging(0.97) TCGA-44-7671-01 3 9730437 9730437 G A MTMR14 Silent p.L431L 0.07 TCGA-44-7671-01 3 97806880 97806880 C G OR5AC2 Missense_Mutation p.N288K 0.27 deleterious(0.01) probably_damaging(1) TCGA-44-7671-01 4 115998017 115998018 GG TTT NDST4 Frame_Shift_Ins p.P59Kfs*3 0.39 TCGA-44-7671-01 4 1161170 1161170 G C SPON2 3'UTR 0.57 TCGA-44-7671-01 4 123377319 123377319 T A IL2 Nonsense_Mutation p.K63* 0.25 TCGA-44-7671-01 4 138442835 138442835 G T PCDH18 Missense_Mutation p.T919K 0.48 deleterious(0) probably_damaging(1) TCGA-44-7671-01 4 155720682 155720682 G A RBM46 Silent p.K456K 0.14 TCGA-44-7671-01 4 164087830 164087830 T A NAF1 Missense_Mutation p.N17I 0.46 deleterious_low_confidence(0.01) benign(0.11) TCGA-44-7671-01 4 164247218 164247218 C A NPY1R Missense_Mutation p.W163C 0.56 deleterious(0.04) probably_damaging(0.989) TCGA-44-7671-01 4 185553059 185553059 C A CASP3 Missense_Mutation p.V115F 0.33 deleterious(0.01) possibly_damaging(0.905) TCGA-44-7671-01 4 46252494 46252494 G A GABRA2 Missense_Mutation p.P396L 0.26 tolerated(0.3) possibly_damaging(0.833) TCGA-44-7671-01 4 54231754 54231754 G C SCFD2 Missense_Mutation p.P119A 0.41 tolerated(0.18) benign(0.234) TCGA-44-7671-01 5 1064054 1064054 C A SLC12A7 Missense_Mutation p.A882S 0.36 deleterious(0.01) possibly_damaging(0.834) TCGA-44-7671-01 5 110407631 110407631 A T TSLP Missense_Mutation p.R15W 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-44-7671-01 5 127782228 127782228 C G FBN2 Missense_Mutation p.E300Q 0.35 tolerated(0.08) benign(0.365) TCGA-44-7671-01 5 131080266 131080266 T C FNIP1 Missense_Mutation p.I70M 0.43 tolerated(0.12) benign(0.006) TCGA-44-7671-01 5 134782574 134782574 G T C5orf20 Silent p.T75T 0.21 TCGA-44-7671-01 5 140215502 140215502 G T PCDHA7 Missense_Mutation p.A512S 0.43 tolerated_low_confidence(0.32) benign(0.34) TCGA-44-7671-01 5 140480970 140480970 T A PCDHB3 Missense_Mutation p.L246H 0.44 tolerated_low_confidence(0.07) benign(0.014) TCGA-44-7671-01 5 140481614 140481614 C T PCDHB3 Missense_Mutation p.R461C 0.49 deleterious_low_confidence(0.01) benign(0.04) TCGA-44-7671-01 5 140580431 140580431 G C PCDHB11 Missense_Mutation p.E362Q 0.32 deleterious_low_confidence(0.02) probably_damaging(0.97) TCGA-44-7671-01 5 140720243 140720243 A T PCDHGA2 Missense_Mutation p.T569S 0.39 deleterious_low_confidence(0.01) benign(0.103) TCGA-44-7671-01 5 140870351 140870351 G T PCDHGC5 Missense_Mutation p.R515L 0.27 deleterious(0.04) possibly_damaging(0.644) TCGA-44-7671-01 5 143587020 143587020 T G KCTD16 Missense_Mutation p.V248G 0.48 deleterious(0) possibly_damaging(0.551) TCGA-44-7671-01 5 168671714 168671714 C A SLIT3 Missense_Mutation p.E112D 0.40 deleterious(0.02) probably_damaging(0.994) TCGA-44-7671-01 5 176524709 176524709 T A FGFR4 3'UTR 0.33 TCGA-44-7671-01 5 176562854 176562855 AG T NSD1 Frame_Shift_Del p.K250Nfs*11 0.30 TCGA-44-7671-01 5 176824901 176824901 C T SLC34A1 Missense_Mutation p.R512C 0.50 deleterious(0.01) possibly_damaging(0.852) TCGA-44-7671-01 5 177158588 177158588 G A FAM153A Missense_Mutation p.P205S 0.61 tolerated_low_confidence(0.06) possibly_damaging(0.803) TCGA-44-7671-01 5 23527869 23527869 G T PRDM9 Missense_Mutation p.R891M 0.26 deleterious(0.01) benign(0.146) TCGA-44-7671-01 5 35876359 35876359 C A IL7R Missense_Mutation p.S384Y 0.45 tolerated(0.05) possibly_damaging(0.861) TCGA-44-7671-01 5 36122394 36122394 T A LMBRD2 Missense_Mutation p.N370Y 0.39 deleterious(0) benign(0.325) TCGA-44-7671-01 5 43537010 43537010 T A PAIP1 Missense_Mutation p.I295F 0.08 deleterious(0) benign(0.293) TCGA-44-7671-01 5 55472081 55472081 A G ANKRD55 Silent p.S70S 0.27 TCGA-44-7671-01 5 67575530 67575530 C T PIK3R1 Silent p.A201A 0.44 TCGA-44-7671-01 5 68660703 68660703 A T TAF9 3'UTR 0.23 TCGA-44-7671-01 6 152473247 152473247 C G SYNE1 Silent p.L8053L 0.35 TCGA-44-7671-01 6 31727709 31727709 C A MSH5 Missense_Mutation p.R548S 0.36 tolerated(0.61) benign(0.005) TCGA-44-7671-01 6 36298043 36298043 G C C6orf222 Missense_Mutation p.P142R 0.39 tolerated(0.05) probably_damaging(0.972) TCGA-44-7671-01 6 37140918 37140918 C T PIM1 Nonsense_Mutation p.Q252* 0.04 TCGA-44-7671-01 6 47846599 47846599 C G PTCHD4 Missense_Mutation p.V661L 0.37 tolerated(1) benign(0.011) TCGA-44-7671-01 6 50683151 50683151 C T TFAP2D Missense_Mutation p.A121V 0.41 tolerated(0.07) possibly_damaging(0.75) TCGA-44-7671-01 6 87725995 87725995 G T HTR1E Missense_Mutation p.G315C 0.55 deleterious(0.05) probably_damaging(0.994) TCGA-44-7671-01 7 112130106 112130106 G T LSMEM1 3'UTR 0.43 TCGA-44-7671-01 7 116397705 116397705 C G MET Missense_Mutation p.T660R 0.36 tolerated(0.3) benign(0.057) TCGA-44-7671-01 7 120780890 120780890 C A CPED1 Missense_Mutation p.T570K 0.20 deleterious(0) benign(0.299) TCGA-44-7671-01 7 142458515 142458515 C T PRSS1 Silent p.G50G 0.04 TCGA-44-7671-01 7 142626165 142626165 G C TRPV5 Missense_Mutation p.R180G 0.53 deleterious(0.02) benign(0.104) TCGA-44-7671-01 7 143140732 143140732 G T TAS2R60 Missense_Mutation p.G63W 0.50 deleterious(0) probably_damaging(0.965) TCGA-44-7671-01 7 150174248 150174248 G T GIMAP8 Missense_Mutation p.G460W 0.31 deleterious(0) probably_damaging(1) TCGA-44-7671-01 7 150774247 150774249 TGG - FASTK In_Frame_Del p.P456del 0.21 TCGA-44-7671-01 7 157367042 157367042 A T PTPRN2 Intron 0.08 TCGA-44-7671-01 7 31829789 31829789 G A PDE1C Intron 0.39 TCGA-44-7671-01 7 34085917 34085917 G T BMPER Splice_Site p.X193_splice 0.19 TCGA-44-7671-01 7 34085918 34085918 G T BMPER Nonsense_Mutation p.G193* 0.21 TCGA-44-7671-01 7 48141551 48141551 A G UPP1 Missense_Mutation p.Y98C 0.48 deleterious(0.01) possibly_damaging(0.764) TCGA-44-7671-01 7 48626780 48626780 C G ABCA13 Missense_Mutation p.L4846V 0.48 probably_damaging(1) TCGA-44-7671-01 7 6029588 6029588 T C PMS2 Splice_Site p.X330_splice 0.51 TCGA-44-7671-01 7 73467602 73467602 T A ELN Silent p.V353V 0.63 TCGA-44-7671-01 7 91687673 91687673 A T AKAP9 Intron 0.24 TCGA-44-7671-01 7 93063564 93063564 C A CALCR Splice_Site p.X431_splice 0.37 TCGA-44-7671-01 8 10467346 10467346 G T RP1L1 Missense_Mutation p.S1421Y 0.31 unknown(0) TCGA-44-7671-01 8 145661513 145661513 C T TONSL Missense_Mutation p.R768Q 0.36 tolerated(1) benign(0.001) TCGA-44-7671-01 8 146156251 146156251 C T ZNF16 Missense_Mutation p.R641H 0.43 tolerated(0.25) benign(0.008) TCGA-44-7671-01 8 1844550 1844550 A G ARHGEF10 Missense_Mutation p.S498G 0.41 deleterious(0.05) benign(0.073) TCGA-44-7671-01 8 21550749 21550749 C A GFRA2 3'UTR 0.35 TCGA-44-7671-01 8 3263580 3263580 C A CSMD1 Silent p.V745V 0.31 TCGA-44-7671-01 8 36698451 36698451 C A KCNU1 Missense_Mutation p.L545I 0.26 tolerated(0.14) possibly_damaging(0.752) TCGA-44-7671-01 8 39624758 39624758 T A ADAM2 Missense_Mutation p.I409F 0.39 tolerated(0.1) benign(0.004) TCGA-44-7671-01 8 48883348 48883348 G T MCM4 Missense_Mutation p.C571F 0.34 deleterious(0) possibly_damaging(0.896) TCGA-44-7671-01 8 61774827 61774827 A T CHD7 Nonsense_Mutation p.K2635* 0.44 TCGA-44-7671-01 8 77761847 77761847 C T ZFHX4 Missense_Mutation p.P1249S 0.13 possibly_damaging(0.803) TCGA-44-7671-01 8 77766851 77766851 C A ZFHX4 Missense_Mutation p.S2565Y 0.37 benign(0.173) TCGA-44-7671-01 8 77767876 77767876 C G ZFHX4 Missense_Mutation p.P2907A 0.44 probably_damaging(0.991) TCGA-44-7671-01 8 88885101 88885101 C - DCAF4L2 Frame_Shift_Del p.A367Pfs*46 0.31 TCGA-44-7671-01 8 98155438 98155438 G T CPQ 3'UTR 0.44 TCGA-44-7671-01 9 138713787 138713787 C T CAMSAP1 Missense_Mutation p.R907H 0.38 deleterious(0) probably_damaging(0.999) TCGA-44-7671-01 9 71628335 71628335 A G PRKACG Missense_Mutation p.L225P 0.51 deleterious(0) probably_damaging(0.997) TCGA-44-7671-01 9 73151003 73151003 G A TRPM3 Missense_Mutation p.R1664W 0.63 deleterious_low_confidence(0.01) possibly_damaging(0.885) TCGA-44-7671-01 9 77436629 77436629 C A TRPM6 Silent p.A322A 0.59 TCGA-44-7671-01 9 8340442 8340442 C A PTPRD Missense_Mutation p.Q1718H 0.53 deleterious(0.02) probably_damaging(0.999) TCGA-44-7671-01 9 8484231 8484231 C A PTPRD Missense_Mutation p.A1101S 0.53 deleterious(0.02) probably_damaging(0.989) TCGA-44-7671-01 9 92220638 92220638 A G GADD45G Missense_Mutation p.D71G 0.44 deleterious(0) probably_damaging(1) TCGA-44-7671-01 X 135431752 135431752 G T GPR112 Missense_Mutation p.A1963S 0.67 tolerated(1) benign(0.009) TCGA-44-7671-01 X 135863064 135863064 A G ARHGEF6 5'UTR 0.56 TCGA-44-7671-01 X 144904874 144904874 C A SLITRK2 Missense_Mutation p.P311T 0.67 deleterious(0) possibly_damaging(0.831) TCGA-44-7671-01 X 67937210 67937210 G T STARD8 Nonsense_Mutation p.E152* 0.50 TCGA-44-7671-01 X 79699185 79699185 C T FAM46D Missense_Mutation p.R383C 0.75 deleterious_low_confidence(0.01) benign(0.443) TCGA-44-7672-01 10 105819901 105819901 C A COL17A1 Missense_Mutation p.A373S 0.14 unknown(0) TCGA-44-7672-01 10 12292308 12292308 A G CDC123 Splice_Site p.X329_splice 0.20 TCGA-44-7672-01 10 135053795 135053795 G A VENTX Silent p.T254T 0.09 TCGA-44-7672-01 10 18292257 18292257 G T SLC39A12 Silent p.G639G 0.15 TCGA-44-7672-01 10 76158301 76158301 G A ADK Nonsense_Mutation p.W173* 0.09 TCGA-44-7672-01 11 125887047 125887047 A G CDON Silent p.Y288Y 0.11 TCGA-44-7672-01 11 1619623 1619623 C G KRTAP5-2 5'Flank 0.12 TCGA-44-7672-01 11 26677945 26677945 C A ANO3 Missense_Mutation p.P894T 0.15 deleterious(0) probably_damaging(1) TCGA-44-7672-01 11 36472822 36472822 G T PRR5L Missense_Mutation p.V217L 0.08 deleterious(0.02) probably_damaging(0.995) TCGA-44-7672-01 11 49597897 49597897 G T RP11-707M1.1 RNA 0.20 TCGA-44-7672-01 11 5068356 5068356 G A OR52J3 Missense_Mutation p.G201R 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-44-7672-01 11 56020007 56020007 T C OR5T3 Missense_Mutation p.M111T 0.14 tolerated(0.05) benign(0.117) TCGA-44-7672-01 11 57947368 57947368 C A OR9Q1 Missense_Mutation p.A151D 0.12 deleterious(0.04) probably_damaging(0.996) TCGA-44-7672-01 11 59480650 59480650 C A OR10V1 Silent p.V223V 0.11 TCGA-44-7672-01 11 63963326 63963326 C G STIP1 Intron 0.10 TCGA-44-7672-01 11 7441739 7441739 T A SYT9 Missense_Mutation p.V447E 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-44-7672-01 11 76372160 76372160 G T LRRC32 Missense_Mutation p.N159K 0.16 deleterious(0) probably_damaging(1) TCGA-44-7672-01 11 7981383 7981383 A G NLRP10 Silent p.N592N 0.12 TCGA-44-7672-01 11 85396655 85396655 C A CCDC89 Missense_Mutation p.E173D 0.16 tolerated(0.05) possibly_damaging(0.456) TCGA-44-7672-01 11 92087327 92087327 C A FAT3 Nonsense_Mutation p.C683* 0.16 TCGA-44-7672-01 12 101573839 101573839 C A SLC5A8 Missense_Mutation p.A401S 0.08 deleterious(0.02) benign(0.292) TCGA-44-7672-01 12 114362517 114362517 T A RBM19 Nonsense_Mutation p.K764* 0.14 TCGA-44-7672-01 12 130840124 130840124 G A PIWIL1 Missense_Mutation p.R439Q 0.04 tolerated(0.54) benign(0.002) TCGA-44-7672-01 12 130855925 130855925 G T PIWIL1 Intron 0.16 TCGA-44-7672-01 12 132393327 132393327 G T ULK1 Missense_Mutation p.R152L 0.14 deleterious(0) probably_damaging(0.977) TCGA-44-7672-01 12 20833070 20833070 A T PDE3A Silent p.A1097A 0.06 TCGA-44-7672-01 12 23728634 23728634 C A SOX5 Missense_Mutation p.A435S 0.06 tolerated(1) benign(0.002) TCGA-44-7672-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.49 deleterious(0.02) possibly_damaging(0.773) TCGA-44-7672-01 12 3662861 3662861 G A PRMT8 Silent p.K154K 0.15 TCGA-44-7672-01 12 48919740 48919740 G T OR8S1 Missense_Mutation p.G109V 0.14 deleterious(0.03) benign(0.035) TCGA-44-7672-01 12 48919741 48919741 G T OR8S1 Silent p.G109G 0.13 TCGA-44-7672-01 12 56334126 56334126 G T DGKA Missense_Mutation p.G276V 0.06 deleterious(0) possibly_damaging(0.744) TCGA-44-7672-01 12 75804431 75804431 G T GLIPR1L2 Missense_Mutation p.C151F 0.12 deleterious(0.01) probably_damaging(0.943) TCGA-44-7672-01 12 85677595 85677595 G T ALX1 Missense_Mutation p.D158Y 0.11 deleterious(0) probably_damaging(0.987) TCGA-44-7672-01 12 88374094 88374094 C T C12orf50 3'UTR 0.17 TCGA-44-7672-01 13 101735531 101735531 G T NALCN Missense_Mutation p.A1201D 0.13 deleterious(0.01) possibly_damaging(0.661) TCGA-44-7672-01 13 109365023 109365023 A C MYO16 Missense_Mutation p.K81Q 0.08 tolerated(0.06) possibly_damaging(0.772) TCGA-44-7672-01 13 111147722 111147722 G A COL4A2 Missense_Mutation p.G1223D 0.10 probably_damaging(0.931) TCGA-44-7672-01 13 23909100 23909100 G T SACS Missense_Mutation p.P2972Q 0.07 probably_damaging(0.998) TCGA-44-7672-01 13 52439850 52439850 G T CCDC70 Missense_Mutation p.K112N 0.13 deleterious(0.02) benign(0.055) TCGA-44-7672-01 14 96916184 96916184 A T AK7 Nonsense_Mutation p.R306* 0.10 TCGA-44-7672-01 15 22382661 22382661 G T OR4N4 Silent p.L63L 0.09 TCGA-44-7672-01 15 72190149 72190149 G C MYO9A Silent p.T1565T 0.24 TCGA-44-7672-01 16 23691457 23691457 G T PLK1 Missense_Mutation p.R154L 0.14 deleterious(0) probably_damaging(1) TCGA-44-7672-01 16 54318982 54318982 C A IRX3 Missense_Mutation p.A271S 0.33 tolerated(0.75) benign(0) TCGA-44-7672-01 16 58620484 58620503 TCTTGTCCAACTCCAAAGGC - CNOT1 Frame_Shift_Del p.A195Tfs*7 0.24 TCGA-44-7672-01 16 69744882 69744882 T C NQO1 Silent p.K274K 0.27 TCGA-44-7672-01 17 28405333 28405333 C T EFCAB5 Silent p.L946L 0.06 TCGA-44-7672-01 17 33504149 33504149 G T UNC45B Silent p.R715R 0.12 TCGA-44-7672-01 17 42476845 42476845 C A GPATCH8 Missense_Mutation p.R867L 0.07 deleterious_low_confidence(0.04) unknown(0) TCGA-44-7672-01 17 51900628 51900628 G A KIF2B Silent p.L78L 0.08 TCGA-44-7672-01 17 55072972 55072972 G T SCPEP1 Silent p.G254G 0.17 TCGA-44-7672-01 17 75192327 75192327 G T SEC14L1 Missense_Mutation p.L251F 0.08 deleterious(0) probably_damaging(0.999) TCGA-44-7672-01 17 75192328 75192328 A T SEC14L1 Missense_Mutation p.T252S 0.08 tolerated(0.29) probably_damaging(0.998) TCGA-44-7672-01 17 7915566 7915566 C T GUCY2D Silent p.V618V 0.25 TCGA-44-7672-01 18 20572760 20572760 C T RBBP8 Nonsense_Mutation p.R324* 0.13 TCGA-44-7672-01 18 3134707 3134707 C A MYOM1 Silent p.A775A 0.10 TCGA-44-7672-01 18 5434002 5434002 G A EPB41L3 Missense_Mutation p.P242S 0.05 tolerated(0.11) benign(0.276) TCGA-44-7672-01 18 57026271 57026271 T A LMAN1 Missense_Mutation p.H69L 0.10 deleterious(0.02) benign(0.007) TCGA-44-7672-01 18 61602436 61602436 C A SERPINB10 Missense_Mutation p.T385N 0.05 deleterious(0) probably_damaging(0.986) TCGA-44-7672-01 19 12127282 12127282 A G ZNF433 Missense_Mutation p.Y134H 0.07 tolerated(0.12) probably_damaging(0.989) TCGA-44-7672-01 19 14208272 14208272 C A PRKACA Missense_Mutation p.W222C 0.24 deleterious(0) probably_damaging(1) TCGA-44-7672-01 19 19115386 19115386 T A SUGP2 Silent p.S840S 0.06 TCGA-44-7672-01 19 21991183 21991183 G T ZNF43 Silent p.I552I 0.20 TCGA-44-7672-01 19 22155240 22155240 A G ZNF208 Missense_Mutation p.C866R 0.10 deleterious(0.02) unknown(0) TCGA-44-7672-01 19 31768461 31768461 G A TSHZ3 Silent p.P746P 0.11 TCGA-44-7672-01 19 34718374 34718374 G T LSM14A 3'UTR 0.14 TCGA-44-7672-01 19 39001314 39001314 G T RYR1 Missense_Mutation p.L3005F 0.22 benign(0.011) TCGA-44-7672-01 19 43099047 43099047 G T CEACAM8 5'UTR 0.25 TCGA-44-7672-01 19 43411932 43411932 A T PSG6 Missense_Mutation p.C261S 0.05 deleterious(0.04) probably_damaging(0.962) TCGA-44-7672-01 19 4550282 4550282 G T SEMA6B Missense_Mutation p.P375H 0.11 deleterious(0) probably_damaging(1) TCGA-44-7672-01 19 53268994 53268994 T A ZNF600 Missense_Mutation p.D672V 0.18 deleterious(0) benign(0.032) TCGA-44-7672-01 19 54201716 54201716 C A MIR523 RNA 0.14 TCGA-44-7672-01 19 54313519 54313519 G T NLRP12 Missense_Mutation p.A465E 0.11 deleterious(0) probably_damaging(0.999) TCGA-44-7672-01 19 54515349 54515349 T A CACNG6 Missense_Mutation p.I230N 0.16 deleterious(0) possibly_damaging(0.815) TCGA-44-7672-01 19 6495936 6495936 G A TUBB4A Silent p.L192L 0.20 TCGA-44-7672-01 19 6928172 6928172 G T EMR1 Nonsense_Mutation p.E747* 0.18 TCGA-44-7672-01 1 151338767 151338767 C A SELENBP1 Missense_Mutation p.R276L 0.20 deleterious(0.03) benign(0.138) TCGA-44-7672-01 1 155227303 155227303 C G SCAMP3 Missense_Mutation p.M221I 0.09 tolerated(1) benign(0.196) TCGA-44-7672-01 1 155408566 155408566 G A ASH1L Missense_Mutation p.H1794Y 0.06 deleterious_low_confidence(0) probably_damaging(0.924) TCGA-44-7672-01 1 158911793 158911793 C A PYHIN1 Missense_Mutation p.H202Q 0.14 tolerated(1) benign(0) TCGA-44-7672-01 1 160793397 160793398 - A LY9 Frame_Shift_Ins p.D548Rfs*4 0.08 TCGA-44-7672-01 1 160801171 160801171 C A CD244 Missense_Mutation p.R360L 0.07 deleterious(0.05) benign(0.404) TCGA-44-7672-01 1 161953806 161953806 C A OLFML2B Missense_Mutation p.D638Y 0.09 tolerated(0.3) benign(0.12) TCGA-44-7672-01 1 16332490 16332490 G T C1orf64 Missense_Mutation p.K53N 0.10 deleterious(0) possibly_damaging(0.617) TCGA-44-7672-01 1 175086110 175086110 G A TNN Missense_Mutation p.V719M 0.14 deleterious(0) probably_damaging(0.992) TCGA-44-7672-01 1 176526316 176526316 G T PAPPA2 Silent p.A286A 0.15 TCGA-44-7672-01 1 190067232 190067232 C G BRINP3 Silent p.V739V 0.10 TCGA-44-7672-01 1 196309558 196309558 G T KCNT2 Missense_Mutation p.Q566K 0.12 tolerated(0.62) benign(0.007) TCGA-44-7672-01 1 209799302 209799302 C G LAMB3 Missense_Mutation p.R556P 0.23 deleterious(0) probably_damaging(0.986) TCGA-44-7672-01 1 22174314 22174314 C T HSPG2 Silent p.P2631P 0.13 TCGA-44-7672-01 1 228558725 228558725 G A OBSCN Missense_Mutation p.R7706H 0.12 probably_damaging(0.993) TCGA-44-7672-01 1 231474216 231474216 G T SPRTN Silent p.L29L 0.15 TCGA-44-7672-01 1 236898975 236898975 G T ACTN2 Missense_Mutation p.M246I 0.07 tolerated(0.35) probably_damaging(0.993) TCGA-44-7672-01 1 240969527 240969527 G C RGS7 Silent p.P394P 0.12 TCGA-44-7672-01 1 247588812 247588812 G - NLRP3 Frame_Shift_Del p.E690Rfs*32 0.08 TCGA-44-7672-01 1 248458056 248458056 G C OR2T12 Missense_Mutation p.F275L 0.12 deleterious(0.01) possibly_damaging(0.841) TCGA-44-7672-01 1 248790268 248790268 G T OR2T11 Silent p.T54T 0.40 TCGA-44-7672-01 1 29447669 29447669 G T TMEM200B Nonsense_Mutation p.Y224* 0.11 TCGA-44-7672-01 1 57349256 57349256 G T C8A Missense_Mutation p.G253C 0.09 deleterious(0) probably_damaging(0.997) TCGA-44-7672-01 20 44806629 44806629 G C CDH22 Missense_Mutation p.P624R 0.10 tolerated(0.34) probably_damaging(0.998) TCGA-44-7672-01 20 56139639 56139639 G A PCK1 Missense_Mutation p.G430S 0.19 deleterious(0) benign(0.409) TCGA-44-7672-01 22 26193997 26193997 C T MYO18B Silent p.S818S 0.18 TCGA-44-7672-01 2 108475895 108475895 C T RGPD4 Missense_Mutation p.H507Y 0.07 tolerated(0.14) benign(0.403) TCGA-44-7672-01 2 132288319 132288319 G C CCDC74A Missense_Mutation p.G155R 0.06 tolerated(0.2) possibly_damaging(0.779) TCGA-44-7672-01 2 139308546 139308546 A C SPOPL Missense_Mutation p.S92R 0.07 deleterious(0.01) benign(0.434) TCGA-44-7672-01 2 172549360 172549360 A T DYNC1I2 Missense_Mutation p.E61V 0.28 deleterious(0) possibly_damaging(0.864) TCGA-44-7672-01 2 175614801 175614801 G T CHRNA1 Missense_Mutation p.P317H 0.17 deleterious(0) probably_damaging(1) TCGA-44-7672-01 2 179595833 179595833 T A TTN Silent p.T5853T 0.07 TCGA-44-7672-01 2 200213728 200213728 T A SATB2 Missense_Mutation p.Q290L 0.08 tolerated(0.07) benign(0.191) TCGA-44-7672-01 2 206165275 206165275 G T PARD3B Missense_Mutation p.G674V 0.18 deleterious(0) probably_damaging(1) TCGA-44-7672-01 2 219508459 219508459 G - ZNF142 Frame_Shift_Del p.P927Hfs*90 0.17 TCGA-44-7672-01 2 219689032 219689032 C A PRKAG3 Missense_Mutation p.R422S 0.16 tolerated(0.14) benign(0.068) TCGA-44-7672-01 2 220404988 220404988 G C CHPF Missense_Mutation p.T482S 0.19 tolerated(0.53) benign(0.01) TCGA-44-7672-01 2 233272329 233272329 C A ALPPL2 Missense_Mutation p.P109Q 0.09 deleterious(0) probably_damaging(0.998) TCGA-44-7672-01 2 241622051 241622051 C A AQP12B Silent p.G68G 0.14 TCGA-44-7672-01 2 39240608 39240608 T A SOS1 Silent p.T720T 0.10 TCGA-44-7672-01 2 89417046 89417046 C A IGKV1-17 Silent p.R46R 0.10 TCGA-44-7672-01 3 100016840 100016840 G T TBC1D23 Missense_Mutation p.C317F 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-44-7672-01 3 148458972 148458972 G A AGTR1 Silent p.V50V 0.14 TCGA-44-7672-01 3 14861995 14861995 G A FGD5 Missense_Mutation p.A473T 0.09 tolerated(0.27) benign(0.001) TCGA-44-7672-01 3 14861996 14861996 C G FGD5 Missense_Mutation p.A473G 0.08 tolerated(0.12) benign(0) TCGA-44-7672-01 3 164735759 164735759 C T SI Missense_Mutation p.M1173I 0.07 deleterious(0) probably_damaging(0.953) TCGA-44-7672-01 3 167051692 167051692 C A ZBBX Nonsense_Mutation p.E204* 0.23 TCGA-44-7672-01 4 123277052 123277052 A T KIAA1109 Missense_Mutation p.N4803Y 0.10 probably_damaging(0.99) TCGA-44-7672-01 4 164085389 164085389 T C NAF1 Missense_Mutation p.K174E 0.15 tolerated(0.09) benign(0.183) TCGA-44-7672-01 4 177609073 177609073 G T VEGFC Missense_Mutation p.A238E 0.21 tolerated(1) benign(0.268) TCGA-44-7672-01 4 185550429 185550429 G C CASP3 Missense_Mutation p.H277Q 0.05 deleterious_low_confidence(0.04) benign(0.004) TCGA-44-7672-01 4 57220214 57220214 A G AASDH Silent p.L458L 0.11 TCGA-44-7672-01 4 8588864 8588864 C A GPR78 Missense_Mutation p.A289D 0.29 deleterious(0.02) benign(0.251) TCGA-44-7672-01 5 127664387 127664387 C T FBN2 Splice_Site p.X1491_splice 0.10 TCGA-44-7672-01 5 130766994 130766994 C A RAPGEF6 Silent p.S1349S 0.09 TCGA-44-7672-01 5 13692086 13692086 C A DNAH5 3'UTR 0.16 TCGA-44-7672-01 5 140475031 140475031 C G PCDHB2 Silent p.G219G 0.13 TCGA-44-7672-01 5 140482386 140482386 G T PCDHB3 Missense_Mutation p.R718M 0.08 deleterious_low_confidence(0.01) benign(0.171) TCGA-44-7672-01 5 140502251 140502251 C G PCDHB4 Missense_Mutation p.T224R 0.10 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-44-7672-01 5 140502701 140502701 C A PCDHB4 Missense_Mutation p.S374Y 0.12 deleterious(0) probably_damaging(0.997) TCGA-44-7672-01 5 140558333 140558333 G T PCDHB8 Missense_Mutation p.A240S 0.06 tolerated_low_confidence(0.09) benign(0.021) TCGA-44-7672-01 5 140581442 140581442 T C PCDHB11 Missense_Mutation p.S699P 0.08 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-44-7672-01 5 140787938 140787938 A T PCDHGB6 Missense_Mutation p.S57C 0.13 deleterious(0.01) probably_damaging(0.95) TCGA-44-7672-01 5 147499581 147499581 G C SPINK5 Missense_Mutation p.D775H 0.25 deleterious(0.02) probably_damaging(1) TCGA-44-7672-01 5 156589877 156589877 G - FAM71B Frame_Shift_Del p.H467Tfs*22 0.09 TCGA-44-7672-01 5 167643912 167643912 C A TENM2 Missense_Mutation p.S1406R 0.14 tolerated(0.36) probably_damaging(0.979) TCGA-44-7672-01 5 175927110 175927110 G T FAF2 Missense_Mutation p.R373L 0.08 deleterious(0) probably_damaging(1) TCGA-44-7672-01 5 33937383 33937383 C A RXFP3 Missense_Mutation p.R180S 0.08 deleterious(0) probably_damaging(0.999) TCGA-44-7672-01 5 35649461 35649461 A G SPEF2 Splice_Site p.X243_splice 0.09 TCGA-44-7672-01 5 74325583 74325583 C T GCNT4 Missense_Mutation p.D94N 0.08 tolerated(0.49) benign(0.002) TCGA-44-7672-01 5 79025009 79025009 G T CMYA5 Missense_Mutation p.G141C 0.11 probably_damaging(0.979) TCGA-44-7672-01 5 9066557 9066557 C A SEMA5A Missense_Mutation p.G759C 0.07 deleterious(0) probably_damaging(1) TCGA-44-7672-01 5 94834075 94834075 T A TTC37 Missense_Mutation p.S1188C 0.14 deleterious(0.04) possibly_damaging(0.873) TCGA-44-7672-01 6 102307276 102307276 T C GRIK2 Missense_Mutation p.Y478H 0.13 deleterious(0) probably_damaging(0.983) TCGA-44-7672-01 6 117237203 117237203 C A RFX6 Missense_Mutation p.H271Q 0.15 deleterious(0) probably_damaging(0.99) TCGA-44-7672-01 6 117665282 117665282 C A ROS1 Missense_Mutation p.V1489F 0.06 deleterious(0) possibly_damaging(0.747) TCGA-44-7672-01 6 123377007 123377007 C G CLVS2 Missense_Mutation p.I244M 0.06 deleterious(0.02) possibly_damaging(0.866) TCGA-44-7672-01 6 132695862 132695862 G A MOXD1 Missense_Mutation p.H107Y 0.12 deleterious(0.02) possibly_damaging(0.545) TCGA-44-7672-01 6 139591742 139591742 G T TXLNB Missense_Mutation p.Q180K 0.08 deleterious(0.02) possibly_damaging(0.893) TCGA-44-7672-01 6 25811900 25811900 G A SLC17A1 Silent p.S332S 0.11 TCGA-44-7672-01 6 29644892 29644892 A T ZFP57 5'UTR 0.12 TCGA-44-7672-01 6 57013339 57013339 G T ZNF451 Missense_Mutation p.S819I 0.14 tolerated(0.07) benign(0.031) TCGA-44-7672-01 6 70812089 70812089 G T COL19A1 Missense_Mutation p.G418V 0.07 deleterious(0.01) unknown(0) TCGA-44-7672-01 6 7584233 7584233 T A DSP Silent p.V2246V 0.30 TCGA-44-7672-01 7 121701174 121701174 T A PTPRZ1 Missense_Mutation p.V2283E 0.23 deleterious(0) probably_damaging(0.958) TCGA-44-7672-01 7 129847876 129847876 G T SSMEM1 Silent p.L42L 0.17 TCGA-44-7672-01 7 138312982 138312982 G C SVOPL Missense_Mutation p.S330R 0.13 tolerated(0.17) benign(0.056) TCGA-44-7672-01 7 142099492 142099492 C A TRBV7-8 Nonsense_Mutation p.E104* 0.06 TCGA-44-7672-01 7 142143692 142143692 G A TRBV6-7 Missense_Mutation p.P102S 0.05 tolerated(0.24) benign(0.383) TCGA-44-7672-01 7 142622765 142622765 C A TRPV5 Silent p.P327P 0.18 TCGA-44-7672-01 7 148787714 148787714 C A ZNF786 Splice_Site p.X6_splice 0.19 TCGA-44-7672-01 7 23293804 23293804 G A GPNMB Silent p.A80A 0.11 TCGA-44-7672-01 7 34851388 34851388 C A NPSR1 Missense_Mutation p.L131M 0.12 deleterious(0) probably_damaging(0.929) TCGA-44-7672-01 7 73279468 73279468 T A WBSCR28 Missense_Mutation p.L73Q 0.06 deleterious(0.01) probably_damaging(0.955) TCGA-44-7672-01 7 87190601 87190601 C T ABCB1 Missense_Mutation p.G269R 0.18 deleterious(0) probably_damaging(0.976) TCGA-44-7672-01 7 88964765 88964765 G A ZNF804B Silent p.T823T 0.06 TCGA-44-7672-01 7 99170705 99170705 A G ZNF655 Missense_Mutation p.H360R 0.18 deleterious(0) benign(0.402) TCGA-44-7672-01 8 105026764 105026764 A T RIMS2 Silent p.T1085T 0.11 TCGA-44-7672-01 8 113301663 113301663 G T CSMD3 Missense_Mutation p.L3027I 0.23 deleterious(0.05) probably_damaging(0.983) TCGA-44-7672-01 8 140630797 140630797 C T KCNK9 Missense_Mutation p.E277K 0.07 tolerated(0.67) benign(0.027) TCGA-44-7672-01 8 2967820 2967820 G T CSMD1 Silent p.T2156T 0.33 TCGA-44-7672-01 8 94821088 94821088 A - TMEM67 Frame_Shift_Del p.G821Vfs*19 0.17 TCGA-44-7672-01 8 97605786 97605786 G T SDC2 Missense_Mutation p.D47Y 0.16 deleterious(0) probably_damaging(1) TCGA-44-7672-01 8 99441377 99441377 T A KCNS2 Silent p.T390T 0.12 TCGA-44-7672-01 9 104433094 104433094 C T GRIN3A Missense_Mutation p.E534K 0.31 deleterious(0) benign(0.066) TCGA-44-7672-01 9 104433100 104433100 C A GRIN3A Missense_Mutation p.D532Y 0.29 deleterious(0) probably_damaging(0.998) TCGA-44-7672-01 9 107578428 107578428 T C ABCA1 Missense_Mutation p.E1245G 0.20 deleterious(0) probably_damaging(1) TCGA-44-7672-01 9 114842405 114842405 G - SUSD1 Frame_Shift_Del p.C506Afs*2 0.07 TCGA-44-7672-01 9 116836424 116836424 T C AMBP Missense_Mutation p.I116V 0.23 tolerated(1) benign(0.003) TCGA-44-7672-01 9 122011272 122011272 G T BRINP1 Nonsense_Mutation p.Y125* 0.25 TCGA-44-7672-01 9 139413985 139413985 C T NOTCH1 Missense_Mutation p.D259N 0.06 tolerated(0.09) benign(0.122) TCGA-44-7672-01 9 21350855 21350855 A G IFNA6 Missense_Mutation p.L11P 0.13 deleterious(0.01) benign(0.12) TCGA-44-7672-01 9 43627630 43627630 G T SPATA31A6 Missense_Mutation p.Q353K 0.27 deleterious(0.02) probably_damaging(0.956) TCGA-44-7672-01 9 6012550 6012550 T C RANBP6 Missense_Mutation p.T1020A 0.12 deleterious(0.01) benign(0.108) TCGA-44-7672-01 9 74860078 74860078 G A GDA Missense_Mutation p.G384S 0.21 tolerated(0.15) benign(0.001) TCGA-44-7672-01 9 79984229 79984229 G T VPS13A Missense_Mutation p.M2856I 0.20 deleterious(0) probably_damaging(0.989) TCGA-44-7672-01 X 107431764 107431764 C A COL4A6 Missense_Mutation p.G525C 0.09 probably_damaging(1) TCGA-44-7672-01 X 137793183 137793183 C A FGF13 Intron 0.14 TCGA-44-7672-01 X 23019760 23019760 G A DDX53 Missense_Mutation p.R529Q 0.04 deleterious(0.02) probably_damaging(1) TCGA-44-7672-01 X 24523382 24523382 G C PDK3 Missense_Mutation p.D188H 0.11 deleterious(0) probably_damaging(0.969) TCGA-44-7672-01 X 29417272 29417272 G C IL1RAPL1 Missense_Mutation p.E184Q 0.05 tolerated(0.08) possibly_damaging(0.724) TCGA-44-7672-01 X 47836373 47836373 C A ZNF182 Missense_Mutation p.K371N 0.06 deleterious(0.04) probably_damaging(0.935) TCGA-44-7672-01 X 50659497 50659497 T G BMP15 Missense_Mutation p.C357G 0.13 deleterious(0.01) probably_damaging(1) TCGA-44-7672-01 X 53280041 53280041 G A IQSEC2 Missense_Mutation p.R573C 0.28 tolerated_low_confidence(0.26) benign(0.183) TCGA-44-7672-01 X 74644525 74644525 T G ZDHHC15 Missense_Mutation p.Y233S 0.11 deleterious(0) possibly_damaging(0.897) TCGA-44-7672-01 X 76855002 76855002 C T ATRX Missense_Mutation p.G1945E 0.10 benign(0.024) TCGA-44-7672-01 X 78216671 78216671 C A P2RY10 Silent p.T218T 0.18 TCGA-44-8117-01 10 105215319 105215319 G T CALHM1 Silent p.I247I 0.23 TCGA-44-8117-01 10 105484119 105484119 C G SH3PXD2A Missense_Mutation p.A103P 0.27 deleterious(0) probably_damaging(0.981) TCGA-44-8117-01 10 108367013 108367013 G T SORCS1 Missense_Mutation p.P1026T 0.20 deleterious(0.01) probably_damaging(0.939) TCGA-44-8117-01 10 111879257 111879257 C T ADD3 Missense_Mutation p.L299F 0.26 tolerated(0.08) possibly_damaging(0.652) TCGA-44-8117-01 10 115609137 115609137 C G DCLRE1A Missense_Mutation p.G576A 0.16 tolerated(0.47) benign(0.004) TCGA-44-8117-01 10 115923040 115923040 C A C10orf118 5'UTR 0.21 TCGA-44-8117-01 10 117026437 117026437 G T ATRNL1 Missense_Mutation p.G646W 0.37 tolerated(0.08) possibly_damaging(0.619) TCGA-44-8117-01 10 117154182 117154182 T A ATRNL1 Missense_Mutation p.S1063R 0.36 deleterious(0.04) benign(0.159) TCGA-44-8117-01 10 118424413 118424413 C A C10orf82 Missense_Mutation p.G107V 0.36 deleterious(0) probably_damaging(1) TCGA-44-8117-01 10 118424414 118424414 C A C10orf82 Missense_Mutation p.G107C 0.35 deleterious(0) probably_damaging(1) TCGA-44-8117-01 10 124361494 124361494 C A DMBT1 Silent p.A1175A 0.50 TCGA-44-8117-01 10 131671816 131671816 G T EBF3 Silent p.A227A 0.24 TCGA-44-8117-01 10 13698955 13698955 C T FRMD4A Silent p.L878L 0.39 TCGA-44-8117-01 10 18266929 18266929 C A SLC39A12 Missense_Mutation p.H284N 0.36 tolerated(0.22) benign(0.029) TCGA-44-8117-01 10 20568717 20568717 A T PLXDC2 Missense_Mutation p.K520I 0.26 deleterious(0) probably_damaging(0.987) TCGA-44-8117-01 10 22002874 22002874 A G MLLT10 Missense_Mutation p.T625A 0.15 tolerated(0.06) probably_damaging(0.993) TCGA-44-8117-01 10 25887654 25887654 T A GPR158 Silent p.A1033A 0.20 TCGA-44-8117-01 10 27702711 27702711 G T PTCHD3 Missense_Mutation p.L157M 0.23 tolerated(0.36) benign(0.064) TCGA-44-8117-01 10 27703132 27703132 G T PTCHD3 Silent p.P16P 0.37 TCGA-44-8117-01 10 43046051 43046051 C A ZNF37BP RNA 0.61 TCGA-44-8117-01 10 468768 468768 G A DIP2C Silent p.H200H 0.19 TCGA-44-8117-01 10 48388538 48388538 G T RBP3 Silent p.I780I 0.13 TCGA-44-8117-01 10 52003012 52003012 C A ASAH2 Missense_Mutation p.V154L 0.54 tolerated(0.05) benign(0.424) TCGA-44-8117-01 10 56287616 56287616 C A PCDH15 Missense_Mutation p.G38V 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-8117-01 10 71176180 71176180 G T TACR2 5'UTR 0.55 TCGA-44-8117-01 10 71690222 71690222 C T COL13A1 Missense_Mutation p.P522S 0.25 tolerated(0.07) benign(0.254) TCGA-44-8117-01 10 7285575 7285575 C A SFMBT2 Silent p.G355G 0.34 TCGA-44-8117-01 10 73326639 73326639 C A CDH23 Silent p.I190I 0.23 TCGA-44-8117-01 10 7618975 7618975 C A ITIH5 Silent p.G473G 0.26 TCGA-44-8117-01 10 96701988 96701988 G A CYP2C9 Missense_Mutation p.R124Q 0.15 deleterious(0) probably_damaging(0.983) TCGA-44-8117-01 11 100922191 100922191 T G PGR Missense_Mutation p.Q774P 0.38 deleterious(0.01) probably_damaging(0.983) TCGA-44-8117-01 11 102825983 102825983 G T MMP13 Nonsense_Mutation p.Y120* 0.14 TCGA-44-8117-01 11 105948493 105948493 G T AASDHPPT Missense_Mutation p.W19L 0.31 tolerated(0.06) possibly_damaging(0.902) TCGA-44-8117-01 11 105948494 105948494 G T AASDHPPT Missense_Mutation p.W19C 0.31 deleterious(0) probably_damaging(1) TCGA-44-8117-01 11 106810332 106810332 T C GUCY1A2 Missense_Mutation p.T354A 0.38 tolerated(0.52) benign(0.001) TCGA-44-8117-01 11 108712202 108712202 G T DDX10 Missense_Mutation p.R749L 0.15 deleterious(0.04) possibly_damaging(0.689) TCGA-44-8117-01 11 110461422 110461422 C A ARHGAP20 Nonsense_Mutation p.E419* 0.25 TCGA-44-8117-01 11 111407526 111407526 C A C11orf88 Missense_Mutation p.Q189K 0.40 tolerated(0.2) benign(0.004) TCGA-44-8117-01 11 112050148 112050148 G - BCO2 Frame_Shift_Del p.W79Cfs*41 0.17 TCGA-44-8117-01 11 113661420 113661420 C A ATF4P4 RNA 0.35 TCGA-44-8117-01 11 113661421 113661421 C T ATF4P4 RNA 0.36 TCGA-44-8117-01 11 118918745 118918745 C A HYOU1 Silent p.L808L 0.26 TCGA-44-8117-01 11 120337903 120337903 G C ARHGEF12 Missense_Mutation p.D914H 0.29 deleterious(0) possibly_damaging(0.695) TCGA-44-8117-01 11 122738751 122738751 G A CRTAM Missense_Mutation p.S332N 0.34 deleterious(0.02) benign(0.388) TCGA-44-8117-01 11 122827243 122827243 C G C11orf63 Missense_Mutation p.L657V 0.41 deleterious(0) probably_damaging(0.965) TCGA-44-8117-01 11 123476161 123476161 C A GRAMD1B Missense_Mutation p.T290K 0.29 tolerated(0.34) benign(0.157) TCGA-44-8117-01 11 123756111 123756111 T C TMEM225 Missense_Mutation p.S8G 0.42 tolerated(0.17) benign(0.01) TCGA-44-8117-01 11 123894340 123894340 G T OR10G9 Silent p.S207S 0.37 TCGA-44-8117-01 11 126136725 126136725 C G SRPR Missense_Mutation p.E207Q 0.16 tolerated(0.13) possibly_damaging(0.517) TCGA-44-8117-01 11 126396518 126396518 C G KIRREL3 Silent p.T66T 0.17 TCGA-44-8117-01 11 14990345 14990345 T C CALCA Silent p.%3D 0.33 TCGA-44-8117-01 11 17809940 17809940 C A SERGEF Missense_Mutation p.G357C 0.50 deleterious(0) probably_damaging(1) TCGA-44-8117-01 11 18195203 18195203 C A MRGPRX4 Missense_Mutation p.R134S 0.28 deleterious(0) probably_damaging(0.958) TCGA-44-8117-01 11 18195204 18195204 G A MRGPRX4 Missense_Mutation p.R134H 0.28 tolerated(0.05) possibly_damaging(0.537) TCGA-44-8117-01 11 18267479 18267479 C A SAA2 Missense_Mutation p.A70S 0.31 tolerated(0.22) benign(0.279) TCGA-44-8117-01 11 2338675 2338675 G A TSPAN32 Missense_Mutation p.G274E 0.46 deleterious_low_confidence(0.03) benign(0.059) TCGA-44-8117-01 11 2415357 2415357 A G CD81 Missense_Mutation p.M72V 0.75 deleterious(0.04) possibly_damaging(0.817) TCGA-44-8117-01 11 26734192 26734192 T A SLC5A12 Missense_Mutation p.Q134L 0.31 tolerated(0.1) probably_damaging(0.999) TCGA-44-8117-01 11 27379046 27379046 C T CCDC34 Silent p.Q134Q 0.24 TCGA-44-8117-01 11 28090899 28090899 C A KIF18A Missense_Mutation p.E499D 0.37 deleterious(0.05) benign(0.345) TCGA-44-8117-01 11 28349701 28349701 G C METTL15 Intron 0.18 TCGA-44-8117-01 11 32657326 32657326 G T CCDC73 Silent p.S367S 0.35 TCGA-44-8117-01 11 32657327 32657327 G T CCDC73 Missense_Mutation p.S367Y 0.35 deleterious(0) possibly_damaging(0.812) TCGA-44-8117-01 11 40136771 40136771 C G LRRC4C Missense_Mutation p.E358Q 0.58 deleterious(0.02) possibly_damaging(0.819) TCGA-44-8117-01 11 4621699 4621699 C A TRIM68 Missense_Mutation p.R422L 0.31 deleterious(0.01) probably_damaging(0.985) TCGA-44-8117-01 11 46701321 46701321 G A ARHGAP1 Missense_Mutation p.P302S 0.54 tolerated(0.21) benign(0.01) TCGA-44-8117-01 11 48238839 48238839 G T OR4B1 Missense_Mutation p.V160F 0.66 tolerated(0.56) possibly_damaging(0.644) TCGA-44-8117-01 11 4903660 4903660 C T OR51T1 Silent p.S204S 0.28 TCGA-44-8117-01 11 49168496 49168496 G T FOLH1 Missense_Mutation p.H689N 0.15 deleterious(0.04) probably_damaging(1) TCGA-44-8117-01 11 5475196 5475196 C A OR51I2 Missense_Mutation p.P160T 0.37 deleterious(0.03) possibly_damaging(0.85) TCGA-44-8117-01 11 55065443 55065443 C A TRIM51HP RNA 0.36 TCGA-44-8117-01 11 55322559 55322559 C A OR4C15 Silent p.I259I 0.35 TCGA-44-8117-01 11 55340407 55340407 G T OR4C16 Missense_Mutation p.M268I 0.23 tolerated(0.06) possibly_damaging(0.515) TCGA-44-8117-01 11 55433368 55433368 C A OR4C6 Silent p.L242L 0.14 TCGA-44-8117-01 11 55563816 55563816 G C OR5D14 Missense_Mutation p.C262S 0.34 deleterious(0.04) possibly_damaging(0.859) TCGA-44-8117-01 11 55594895 55594895 C G OR5L2 Silent p.S67S 0.33 TCGA-44-8117-01 11 55653689 55653689 T A TRIM51 Missense_Mutation p.W168R 0.47 deleterious(0) probably_damaging(0.95) TCGA-44-8117-01 11 55658697 55658697 A G TRIM51 Silent p.Q316Q 0.19 TCGA-44-8117-01 11 55658904 55658904 G T TRIM51 Missense_Mutation p.E385D 0.13 tolerated(0.14) benign(0.1) TCGA-44-8117-01 11 56230769 56230769 G C OR5M9 Missense_Mutation p.L37V 0.21 tolerated(0.94) benign(0.003) TCGA-44-8117-01 11 56409810 56409810 A G OR5AP2 Silent p.L36L 0.38 TCGA-44-8117-01 11 57564376 57564376 G T CTNND1 Missense_Mutation p.G290C 0.39 deleterious(0) probably_damaging(0.997) TCGA-44-8117-01 11 59382832 59382832 G A OSBP Silent p.I102I 0.27 TCGA-44-8117-01 11 60620764 60620764 G T PTGDR2 Silent p.T144T 0.50 TCGA-44-8117-01 11 61205531 61205531 G T SDHAF2 Missense_Mutation p.D106Y 0.37 deleterious(0) probably_damaging(1) TCGA-44-8117-01 11 62489758 62489758 C G HNRNPUL2 Missense_Mutation p.R397P 0.36 deleterious(0) probably_damaging(0.977) TCGA-44-8117-01 11 64595176 64595176 C G CDC42BPG Missense_Mutation p.Q1349H 0.43 deleterious(0) probably_damaging(0.999) TCGA-44-8117-01 11 64627432 64627432 C A EHD1 Missense_Mutation p.K293N 0.35 deleterious(0) probably_damaging(0.951) TCGA-44-8117-01 11 65653136 65653136 T C FIBP Splice_Site p.X171_splice 0.40 TCGA-44-8117-01 11 6977128 6977128 A T ZNF215 Missense_Mutation p.K307M 0.37 deleterious(0.01) possibly_damaging(0.817) TCGA-44-8117-01 11 7070924 7070924 G T NLRP14 Missense_Mutation p.D716Y 0.58 tolerated(0.05) benign(0.261) TCGA-44-8117-01 11 7437375 7437375 G T SYT9 Missense_Mutation p.D383Y 0.68 deleterious(0) probably_damaging(1) TCGA-44-8117-01 11 74717077 74717077 C G NEU3 Missense_Mutation p.P309R 0.47 tolerated(0.25) benign(0.186) TCGA-44-8117-01 11 76872055 76872055 A T MYO7A Nonsense_Mutation p.K413* 0.30 TCGA-44-8117-01 11 78380424 78380424 C A TENM4 Missense_Mutation p.K2322N 0.38 deleterious(0) benign(0.088) TCGA-44-8117-01 11 8117188 8117188 C T TUB Missense_Mutation p.L236F 0.44 deleterious(0.03) possibly_damaging(0.619) TCGA-44-8117-01 11 87013481 87013481 C T TMEM135 Missense_Mutation p.S232L 0.14 tolerated(0.23) benign(0.001) TCGA-44-8117-01 11 89060019 89060019 C A NOX4 Nonsense_Mutation p.G548* 0.32 TCGA-44-8117-01 11 92533554 92533554 C A FAT3 Missense_Mutation p.Q2459K 0.24 possibly_damaging(0.796) TCGA-44-8117-01 11 93911607 93911607 G T PANX1 Missense_Mutation p.A132S 0.36 deleterious(0.04) possibly_damaging(0.895) TCGA-44-8117-01 12 100219134 100219134 G T ANKS1B Missense_Mutation p.D56E 0.24 deleterious(0) probably_damaging(0.993) TCGA-44-8117-01 12 10339129 10339129 C A TMEM52B Missense_Mutation p.P63H 0.51 deleterious(0) probably_damaging(0.999) TCGA-44-8117-01 12 10339130 10339130 C A TMEM52B Silent p.P63P 0.51 TCGA-44-8117-01 12 104081982 104081982 C A STAB2 Silent p.R1012R 0.23 TCGA-44-8117-01 12 104144428 104144428 C A STAB2 Silent p.P2170P 0.32 TCGA-44-8117-01 12 104473248 104473248 G T HCFC2 Nonsense_Mutation p.E167* 0.30 TCGA-44-8117-01 12 108589637 108589637 C A WSCD2 Silent p.R10R 0.51 TCGA-44-8117-01 12 108589972 108589972 G C WSCD2 Silent p.R121R 0.22 TCGA-44-8117-01 12 111352022 111352022 A G MYL2 Missense_Mutation p.V81A 0.14 tolerated(0.05) benign(0.134) TCGA-44-8117-01 12 117768316 117768316 G T NOS1 Missense_Mutation p.P187T 0.23 tolerated_low_confidence(0.22) benign(0.003) TCGA-44-8117-01 12 124333381 124333381 G T DNAH10 Missense_Mutation p.Q1900H 0.33 probably_damaging(0.994) TCGA-44-8117-01 12 125396438 125397804 12:125396438-125397804 - UBC large deletion p.S172Qfs*2 0.17 TCGA-44-8117-01 12 130648287 130648287 C A FZD10 Missense_Mutation p.S267Y 0.23 deleterious(0) probably_damaging(0.998) TCGA-44-8117-01 12 14613956 14613956 G T ATF7IP Nonsense_Mutation p.G896* 0.64 TCGA-44-8117-01 12 22402023 22402023 G A ST8SIA1 Silent p.L167L 0.48 TCGA-44-8117-01 12 25398262 25398262 C G KRAS Missense_Mutation p.L19F 0.64 deleterious(0.01) probably_damaging(0.999) TCGA-44-8117-01 12 31568372 31568372 T C DENND5B Silent p.G827G 0.61 TCGA-44-8117-01 12 33031063 33031063 T A PKP2 Missense_Mutation p.S251C 0.39 deleterious(0) probably_damaging(0.977) TCGA-44-8117-01 12 40153786 40153786 C A SLC2A13 3'UTR 0.41 TCGA-44-8117-01 12 42862508 42862508 A G PRICKLE1 Missense_Mutation p.Y170H 0.15 deleterious(0) probably_damaging(1) TCGA-44-8117-01 12 45173494 45173494 G T NELL2 Silent p.G236G 0.17 TCGA-44-8117-01 12 4705384 4705384 G T DYRK4 Missense_Mutation p.V118L 0.62 deleterious(0) probably_damaging(0.999) TCGA-44-8117-01 12 4737269 4737269 T C AKAP3 Missense_Mutation p.R267G 0.60 tolerated(0.16) benign(0.003) TCGA-44-8117-01 12 49444559 49444559 G C KMT2D Missense_Mutation p.P938A 0.37 unknown(0) TCGA-44-8117-01 12 49742701 49742701 G A DNAJC22 Missense_Mutation p.G16S 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-44-8117-01 12 49890777 49890777 A T SPATS2 Missense_Mutation p.T230S 0.25 tolerated(0.84) benign(0.04) TCGA-44-8117-01 12 52710807 52710807 C G KRT83 Missense_Mutation p.E251Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-44-8117-01 12 52882289 52882289 C A KRT6A Missense_Mutation p.G416V 0.43 deleterious(0) probably_damaging(1) TCGA-44-8117-01 12 52886555 52886555 C T KRT6A Missense_Mutation p.V140I 0.24 tolerated(0.71) benign(0.089) TCGA-44-8117-01 12 53045523 53045523 A T KRT2 Nonsense_Mutation p.L135* 0.27 TCGA-44-8117-01 12 53045524 53045524 A T KRT2 Missense_Mutation p.L135I 0.25 tolerated(0.39) unknown(0) TCGA-44-8117-01 12 53187934 53187934 A T KRT3 Missense_Mutation p.L276Q 0.24 deleterious(0) probably_damaging(0.998) TCGA-44-8117-01 12 57849326 57849326 C A INHBE Missense_Mutation p.L3I 0.23 tolerated_low_confidence(0.07) benign(0.307) TCGA-44-8117-01 12 57957263 57957263 G A KIF5A Silent p.T57T 0.17 TCGA-44-8117-01 12 57965894 57965894 C A KIF5A Missense_Mutation p.S471R 0.22 tolerated(0.14) benign(0.002) TCGA-44-8117-01 12 58000810 58000810 C T DTX3 Missense_Mutation p.S55F 0.45 deleterious(0.03) possibly_damaging(0.831) TCGA-44-8117-01 12 69145965 69145965 G T SLC35E3 Missense_Mutation p.A223S 0.17 tolerated(0.17) benign(0.06) TCGA-44-8117-01 12 71950396 71950396 C A LGR5 Intron 0.16 TCGA-44-8117-01 12 72667058 72667058 T C TRHDE Missense_Mutation p.V167A 0.19 tolerated(0.25) probably_damaging(0.993) TCGA-44-8117-01 12 78225255 78225255 G T NAV3 Missense_Mutation p.G5V 0.24 tolerated_low_confidence(0.26) probably_damaging(0.999) TCGA-44-8117-01 12 81657085 81657085 C A PPFIA2 Missense_Mutation p.G1214W 0.28 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-44-8117-01 12 91348329 91348329 C T CCER1 Missense_Mutation p.R64K 0.23 deleterious(0.01) possibly_damaging(0.567) TCGA-44-8117-01 12 91501954 91501954 T - LUM Frame_Shift_Del p.N268Tfs*24 0.18 TCGA-44-8117-01 12 97885694 97885694 C T MIR1251 RNA 0.31 TCGA-44-8117-01 13 100617568 100617568 A C ZIC5 3'UTR 0.56 TCGA-44-8117-01 13 100622598 100622598 G C ZIC5 Missense_Mutation p.H444Q 0.40 deleterious(0) possibly_damaging(0.748) TCGA-44-8117-01 13 101714413 101714413 C A NALCN Silent p.L1554L 0.43 TCGA-44-8117-01 13 101795469 101795469 G A NALCN Missense_Mutation p.R694C 0.24 deleterious(0.02) benign(0.018) TCGA-44-8117-01 13 103514782 103514782 G T BIVM-ERCC5 Missense_Mutation p.S854I 0.40 tolerated_low_confidence(0.06) benign(0.065) TCGA-44-8117-01 13 109672172 109672172 G T MYO16 Silent p.A881A 0.25 TCGA-44-8117-01 13 109779945 109779945 G T MYO16 Intron 0.27 TCGA-44-8117-01 13 110814690 110814690 C A COL4A1 Missense_Mutation p.R1450M 0.27 unknown(0) TCGA-44-8117-01 13 111176505 111176505 C A RAB20 Missense_Mutation p.R71L 0.49 deleterious(0) probably_damaging(1) TCGA-44-8117-01 13 25672141 25672141 T C PABPC3 Missense_Mutation p.V602A 0.25 tolerated(0.06) possibly_damaging(0.488) TCGA-44-8117-01 13 35644115 35644115 G T NBEA Missense_Mutation p.G437V 0.41 deleterious(0) probably_damaging(0.992) TCGA-44-8117-01 13 36909550 36909550 C A SPG20 Nonsense_Mutation p.E140* 0.27 TCGA-44-8117-01 13 37679113 37679113 C A CSNK1A1L Missense_Mutation p.G94V 0.29 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-44-8117-01 13 39586351 39586351 C A PROSER1 Missense_Mutation p.A861S 0.29 tolerated(0.08) benign(0.43) TCGA-44-8117-01 13 46559768 46559768 T A ZC3H13 Nonsense_Mutation p.R462* 0.30 TCGA-44-8117-01 13 53008927 53008927 C A VPS36 Splice_Site p.X147_splice 0.31 TCGA-44-8117-01 13 53008928 53008928 C A VPS36 Missense_Mutation p.Q147H 0.30 tolerated(0.13) benign(0.001) TCGA-44-8117-01 13 61987586 61987586 C A PCDH20 Missense_Mutation p.V216L 0.33 tolerated(0.43) benign(0.003) TCGA-44-8117-01 13 64321006 64321006 G T AL445989.1 Missense_Mutation p.G25C 0.33 unknown(0) TCGA-44-8117-01 13 78474775 78474775 G T EDNRB Silent p.A412A 0.19 TCGA-44-8117-01 13 86368821 86368821 G A SLITRK6 Missense_Mutation p.S608F 0.50 deleterious(0) probably_damaging(0.999) TCGA-44-8117-01 13 86369842 86369842 G A SLITRK6 Missense_Mutation p.P268S 0.14 tolerated(0.15) benign(0.006) TCGA-44-8117-01 13 98673309 98673309 G C IPO5 Silent p.A1061A 0.16 TCGA-44-8117-01 14 102028157 102028157 G T DIO3 Silent p.L108L 0.29 TCGA-44-8117-01 14 103804719 103804719 C A EIF5 Silent p.G165G 0.33 TCGA-44-8117-01 14 105397232 105397232 C A PLD4 Missense_Mutation p.P291T 0.16 deleterious(0) probably_damaging(1) TCGA-44-8117-01 14 105615590 105615590 T C JAG2 Missense_Mutation p.D557G 0.51 deleterious(0.04) probably_damaging(0.995) TCGA-44-8117-01 14 106780678 106780678 C A IGHV4-28 Silent p.G62G 0.45 TCGA-44-8117-01 14 20404240 20404240 A G OR4K1 Missense_Mutation p.R139G 0.17 deleterious(0.01) benign(0.278) TCGA-44-8117-01 14 23587854 23587854 C A CEBPE Silent p.G149G 0.51 TCGA-44-8117-01 14 24658524 24658524 C A TM9SF1 3'UTR 0.32 TCGA-44-8117-01 14 29237504 29237504 C A FOXG1 Missense_Mutation p.P340H 0.26 tolerated(0.12) benign(0.016) TCGA-44-8117-01 14 30100154 30100154 G T PRKD1 Missense_Mutation p.P489H 0.22 deleterious(0.01) benign(0.114) TCGA-44-8117-01 14 34419800 34419800 G A EGLN3 Silent p.T53T 0.35 TCGA-44-8117-01 14 36004331 36004331 C - INSM2 Frame_Shift_Del p.R292Afs*68 0.30 TCGA-44-8117-01 14 42360541 42360541 G C LRFN5 Missense_Mutation p.D492H 0.23 deleterious(0) probably_damaging(0.998) TCGA-44-8117-01 14 45398340 45398340 C A KLHL28 Missense_Mutation p.G536V 0.27 deleterious(0) probably_damaging(1) TCGA-44-8117-01 14 45468634 45468634 G - FAM179B Frame_Shift_Del p.G758Vfs*13 0.17 TCGA-44-8117-01 14 47566271 47566271 C A MDGA2 Missense_Mutation p.E327D 0.20 tolerated(0.32) benign(0.099) TCGA-44-8117-01 14 47601035 47601035 G T MDGA2 Silent p.I269I 0.33 TCGA-44-8117-01 14 50844996 50844996 C T CDKL1 Intron 0.23 TCGA-44-8117-01 14 58711604 58711604 C A PSMA3 5'UTR 0.23 TCGA-44-8117-01 14 63269214 63269214 C A KCNH5 Missense_Mutation p.R552L 0.27 deleterious(0.01) possibly_damaging(0.696) TCGA-44-8117-01 14 64468754 64468754 G T SYNE2 Missense_Mutation p.Q1247H 0.17 benign(0.023) TCGA-44-8117-01 14 65216153 65216153 G T SPTB Silent p.A2286A 0.44 TCGA-44-8117-01 14 70480182 70480182 C A SMOC1 Missense_Mutation p.N340K 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-44-8117-01 14 70527574 70527574 A T SLC8A3 Missense_Mutation p.W623R 0.24 deleterious(0.04) benign(0) TCGA-44-8117-01 14 74062121 74062121 G T ACOT4 Missense_Mutation p.Q343H 0.40 deleterious(0.03) probably_damaging(0.967) TCGA-44-8117-01 14 75360058 75360058 A T DLST Silent p.A201A 0.52 TCGA-44-8117-01 14 75515020 75515020 C A MLH3 Missense_Mutation p.G447C 0.21 deleterious(0) possibly_damaging(0.873) TCGA-44-8117-01 14 78142091 78142091 T A ALKBH1 Silent p.A216A 0.35 TCGA-44-8117-01 14 81302668 81302668 C T CEP128 Missense_Mutation p.R313H 0.22 tolerated(0.09) probably_damaging(0.976) TCGA-44-8117-01 14 81610721 81610721 G - TSHR 3'UTR 0.14 TCGA-44-8117-01 14 94109917 94109917 G T UNC79 Missense_Mutation p.G1835V 0.23 deleterious(0) possibly_damaging(0.736) TCGA-44-8117-01 14 94173245 94173245 C A UNC79 Missense_Mutation p.L2458I 0.17 tolerated(0.61) benign(0.442) TCGA-44-8117-01 14 94942603 94942603 C A SERPINA9 5'Flank 0.35 TCGA-44-8117-01 14 95081008 95081008 C A SERPINA3 Missense_Mutation p.P77Q 0.26 deleterious(0) probably_damaging(1) TCGA-44-8117-01 14 96152926 96152926 C T TCL1B Missense_Mutation p.P41L 0.28 tolerated(0.1) probably_damaging(0.948) TCGA-44-8117-01 15 24922793 24922793 A T NPAP1 Silent p.L593L 0.63 TCGA-44-8117-01 15 24922795 24922795 G T NPAP1 Missense_Mutation p.S594I 0.64 tolerated(0.09) possibly_damaging(0.733) TCGA-44-8117-01 15 30024889 30024889 C A TJP1 Missense_Mutation p.A623S 0.67 tolerated(0.1) benign(0.221) TCGA-44-8117-01 15 42028610 42028610 G T MGA Missense_Mutation p.R1383L 0.34 tolerated(0.05) benign(0.246) TCGA-44-8117-01 15 42105173 42105173 C A MAPKBP1 Missense_Mutation p.N231K 0.49 deleterious(0) probably_damaging(0.987) TCGA-44-8117-01 15 42178377 42178377 C T SPTBN5 Missense_Mutation p.R359Q 0.29 probably_damaging(0.946) TCGA-44-8117-01 15 45387160 45387160 T A DUOX2 Nonsense_Mutation p.K1457* 0.65 TCGA-44-8117-01 15 45434248 45434248 A G DUOX1 Missense_Mutation p.Y587C 0.05 deleterious(0) probably_damaging(0.995) TCGA-44-8117-01 15 45457110 45457110 G A DUOX1 3'UTR 0.27 TCGA-44-8117-01 15 50158585 50158585 T A ATP8B4 Missense_Mutation p.N1042Y 0.53 tolerated(0.71) benign(0.309) TCGA-44-8117-01 15 50336788 50336788 C G ATP8B4 Intron 0.58 TCGA-44-8117-01 15 50336854 50336854 G A ATP8B4 Silent p.T79T 0.25 TCGA-44-8117-01 15 63092602 63092602 G T TLN2 Missense_Mutation p.K2090N 0.36 tolerated(0.2) benign(0.037) TCGA-44-8117-01 15 65347468 65347468 G C RASL12 Missense_Mutation p.S190R 0.32 tolerated(0.06) benign(0.001) TCGA-44-8117-01 15 73615857 73615857 G C HCN4 Missense_Mutation p.I859M 0.27 tolerated_low_confidence(0.17) unknown(0) TCGA-44-8117-01 15 77906996 77906996 T C LINGO1 Missense_Mutation p.Y418C 0.31 deleterious(0.01) probably_damaging(0.981) TCGA-44-8117-01 15 80460487 80460487 T G FAH Missense_Mutation p.D183E 0.47 tolerated(0.67) benign(0.003) TCGA-44-8117-01 15 90294072 90294072 G A MESP1 Missense_Mutation p.R131C 0.81 deleterious(0) probably_damaging(1) TCGA-44-8117-01 15 92988069 92988069 G T ST8SIA2 Missense_Mutation p.R251L 0.62 possibly_damaging(0.84) TCGA-44-8117-01 16 1251719 1251719 G T CACNA1H Silent p.S423S 0.16 TCGA-44-8117-01 16 15698213 15698213 G A KIAA0430 Nonsense_Mutation p.R1409* 0.34 TCGA-44-8117-01 16 20448486 20448486 T C ACSM5 Missense_Mutation p.V474A 0.34 deleterious(0) possibly_damaging(0.732) TCGA-44-8117-01 16 20480976 20480976 G - ACSM2A Frame_Shift_Del p.R178Efs*15 0.30 TCGA-44-8117-01 16 20682878 20682878 C A ACSM1 Missense_Mutation p.A243S 0.33 tolerated(0.1) possibly_damaging(0.841) TCGA-44-8117-01 16 2161848 2161848 G A PKD1 Missense_Mutation p.A1107V 0.35 benign(0.014) TCGA-44-8117-01 16 21809090 21809090 A G RP11-645C24.5 5'Flank 0.04 TCGA-44-8117-01 16 23080434 23080434 C A USP31 Missense_Mutation p.V998L 0.35 tolerated_low_confidence(0.32) possibly_damaging(0.603) TCGA-44-8117-01 16 27475845 27475845 C A GTF3C1 Missense_Mutation p.D1890Y 0.37 deleterious(0) benign(0.316) TCGA-44-8117-01 16 27640035 27640035 T A KIAA0556 Nonsense_Mutation p.L65* 0.28 TCGA-44-8117-01 16 2808988 2808988 G T SRRM2 Missense_Mutation p.R199M 0.50 unknown(0) TCGA-44-8117-01 16 31090634 31090634 G T ZNF646 Missense_Mutation p.G997C 0.34 deleterious(0) possibly_damaging(0.627) TCGA-44-8117-01 16 31309199 31309199 G A ITGAM Missense_Mutation p.G545E 0.26 deleterious(0.04) probably_damaging(1) TCGA-44-8117-01 16 3340375 3340375 A G ZNF263 Silent p.R623R 0.20 TCGA-44-8117-01 16 4242719 4242719 G - SRL Frame_Shift_Del p.P286Qfs*30 0.18 TCGA-44-8117-01 16 4787847 4787847 C T C16orf71 Missense_Mutation p.T59I 0.37 deleterious(0.02) probably_damaging(0.991) TCGA-44-8117-01 16 5078945 5078945 C G NAGPA Missense_Mutation p.D286H 0.36 probably_damaging(1) TCGA-44-8117-01 16 51173942 51173942 C A SALL1 Nonsense_Mutation p.E731* 0.38 TCGA-44-8117-01 16 53686540 53686540 T A RPGRIP1L Missense_Mutation p.S687C 0.40 deleterious(0) probably_damaging(0.909) TCGA-44-8117-01 16 55613154 55613154 A G LPCAT2 Missense_Mutation p.Y483C 0.26 deleterious(0) probably_damaging(0.987) TCGA-44-8117-01 16 56892495 56892495 C T MIR138-2 RNA 0.31 TCGA-44-8117-01 16 61935134 61935134 C G CDH8 Missense_Mutation p.E166Q 0.36 tolerated(0.31) benign(0.004) TCGA-44-8117-01 16 67573953 67573953 C T FAM65A Intron 0.26 TCGA-44-8117-01 16 67680869 67680869 G T RLTPR Missense_Mutation p.G202C 0.30 tolerated(0.06) benign(0.04) TCGA-44-8117-01 16 69942663 69942663 G T WWP2 Splice_Site p.X305_splice 0.22 TCGA-44-8117-01 16 74972089 74972089 C A WDR59 Nonsense_Mutation p.E204* 0.16 TCGA-44-8117-01 16 88951468 88951468 C G CBFA2T3 Missense_Mutation p.R368P 0.44 deleterious(0.02) benign(0.091) TCGA-44-8117-01 17 10433008 10433008 T A MYH2 Missense_Mutation p.K997M 0.36 deleterious(0) probably_damaging(0.986) TCGA-44-8117-01 17 1183527 1183527 C G TUSC5 Missense_Mutation p.P78A 0.75 tolerated(0.06) benign(0.004) TCGA-44-8117-01 17 12639542 12639542 T A MYOCD Missense_Mutation p.D160E 0.34 tolerated(0.38) probably_damaging(0.999) TCGA-44-8117-01 17 19679692 19679692 C A ULK2 Silent p.S1027S 0.28 TCGA-44-8117-01 17 19748649 19748649 C A ULK2 Missense_Mutation p.A171S 0.26 deleterious(0) probably_damaging(0.934) TCGA-44-8117-01 17 21319678 21319678 T A KCNJ12 Missense_Mutation p.Y342N 0.24 deleterious(0) probably_damaging(0.987) TCGA-44-8117-01 17 25783761 25783761 G T KSR1 Missense_Mutation p.G31V 0.42 tolerated(0.14) probably_damaging(0.998) TCGA-44-8117-01 17 28811258 28811258 G T GOSR1 Missense_Mutation p.G60V 0.26 tolerated(0.16) benign(0.101) TCGA-44-8117-01 17 29857402 29857402 G T RAB11FIP4 Missense_Mutation p.S571I 0.64 deleterious(0) probably_damaging(0.999) TCGA-44-8117-01 17 29857403 29857403 C T RAB11FIP4 Silent p.S571S 0.65 TCGA-44-8117-01 17 39324408 39324408 C A KRTAP4-3 Missense_Mutation p.C6F 0.22 deleterious(0) unknown(0) TCGA-44-8117-01 17 39767202 39767202 G T KRT16 Silent p.S321S 0.28 TCGA-44-8117-01 17 39890458 39890458 G C HAP1 Silent p.S143S 0.38 TCGA-44-8117-01 17 41063133 41063133 C A G6PC Missense_Mutation p.T255N 0.27 deleterious(0) possibly_damaging(0.562) TCGA-44-8117-01 17 41245945 41245945 C A BRCA1 Nonsense_Mutation p.G535* 0.29 TCGA-44-8117-01 17 41939276 41939276 G C CD300LG Silent p.A332A 0.29 TCGA-44-8117-01 17 42328937 42328937 C A SLC4A1 Missense_Mutation p.E777D 0.41 tolerated(0.13) possibly_damaging(0.639) TCGA-44-8117-01 17 45822296 45822296 G - TBX21 Frame_Shift_Del p.D392Tfs*13 0.31 TCGA-44-8117-01 17 47044562 47044562 C A GIP Silent p.L11L 0.13 TCGA-44-8117-01 17 48750848 48750848 C T ABCC3 Missense_Mutation p.H810Y 0.14 deleterious(0) probably_damaging(0.988) TCGA-44-8117-01 17 51902217 51902217 A G KIF2B Missense_Mutation p.D608G 0.37 deleterious(0.05) benign(0.004) TCGA-44-8117-01 17 61564382 61564382 C T ACE Silent p.Y751Y 0.12 TCGA-44-8117-01 17 61769181 61769182 CC T MAP3K3 Frame_Shift_Del p.S509Ffs*7 0.16 TCGA-44-8117-01 17 61958765 61958765 C A GH2 Missense_Mutation p.R42L 0.40 tolerated(0.08) benign(0.414) TCGA-44-8117-01 17 650471 650471 G A GEMIN4 Missense_Mutation p.T271M 0.03 deleterious(0.01) probably_damaging(0.96) TCGA-44-8117-01 17 65909301 65909301 G T BPTF Missense_Mutation p.W1767C 0.15 probably_damaging(1) TCGA-44-8117-01 17 7096430 7096430 G T DLG4 Missense_Mutation p.T610K 0.33 deleterious(0) probably_damaging(1) TCGA-44-8117-01 17 73214376 73214376 G A NUP85 Missense_Mutation p.S191N 0.18 tolerated(0.11) benign(0.005) TCGA-44-8117-01 17 73919584 73919584 C A FBF1 Silent p.L354L 0.52 TCGA-44-8117-01 17 74936813 74936813 G T MGAT5B Splice_Site p.X587_splice 0.60 TCGA-44-8117-01 17 7578419 7578419 C A TP53 Nonsense_Mutation p.E171* 0.61 TCGA-44-8117-01 18 10487958 10487958 G - APCDD1 Frame_Shift_Del p.R491Gfs*77 0.27 TCGA-44-8117-01 18 13049294 13049294 G A CEP192 Missense_Mutation p.R835K 0.17 tolerated(0.4) benign(0.006) TCGA-44-8117-01 18 13884741 13884741 C A MC2R Missense_Mutation p.Q259H 0.36 tolerated(0.09) benign(0.034) TCGA-44-8117-01 18 13884795 13884795 C T MC2R Silent p.L241L 0.12 TCGA-44-8117-01 18 14752991 14752991 G A ANKRD30B Missense_Mutation p.V164I 0.14 deleterious(0.01) possibly_damaging(0.77) TCGA-44-8117-01 18 14803810 14803810 T A ANKRD30B Missense_Mutation p.S757R 0.13 deleterious(0.04) benign(0.034) TCGA-44-8117-01 18 19409044 19409044 G C MIB1 Intron 0.25 TCGA-44-8117-01 18 30672802 30672802 A T CCDC178 Missense_Mutation p.L771I 0.56 deleterious(0.01) probably_damaging(0.975) TCGA-44-8117-01 18 31673492 31673492 C G NOL4 Missense_Mutation p.D237H 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-44-8117-01 18 42449243 42449243 C A SETBP1 Missense_Mutation p.P179T 0.18 tolerated(0.65) benign(0.003) TCGA-44-8117-01 18 43405623 43405623 C T SIGLEC15 5'UTR 0.28 TCGA-44-8117-01 18 44561610 44561610 T C TCEB3B Missense_Mutation p.H9R 0.46 tolerated(0.34) benign(0) TCGA-44-8117-01 18 47010030 47010030 G A C18orf32 Missense_Mutation p.P30L 0.54 deleterious(0) probably_damaging(0.943) TCGA-44-8117-01 18 48252513 48252513 C G MAPK4 Missense_Mutation p.S345R 0.17 deleterious(0.04) probably_damaging(0.986) TCGA-44-8117-01 18 56203965 56203965 C A ALPK2 Missense_Mutation p.D1152Y 0.27 deleterious(0.03) possibly_damaging(0.906) TCGA-44-8117-01 18 61228330 61228330 G T SERPINB12 Missense_Mutation p.G133C 0.40 tolerated(0.77) benign(0.005) TCGA-44-8117-01 18 61600369 61600369 C A SERPINB10 Missense_Mutation p.L241I 0.25 deleterious(0.03) probably_damaging(1) TCGA-44-8117-01 18 61602220 61602222 ATG TT SERPINB10 Frame_Shift_Del p.D313Vfs*32 0.31 TCGA-44-8117-01 18 61654322 61654322 A T SERPINB8 Missense_Mutation p.K312M 0.13 deleterious(0.02) probably_damaging(0.912) TCGA-44-8117-01 18 64239298 64239298 G T CDH19 Missense_Mutation p.N48K 0.27 deleterious(0.04) benign(0.042) TCGA-44-8117-01 18 66564490 66564490 G T CCDC102B Missense_Mutation p.W363L 0.42 deleterious(0) probably_damaging(0.978) TCGA-44-8117-01 18 67365708 67365708 A T DOK6 Missense_Mutation p.T160S 0.18 tolerated(0.13) possibly_damaging(0.692) TCGA-44-8117-01 18 72109307 72109307 C T FAM69C Missense_Mutation p.M307I 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-44-8117-01 18 72226587 72226587 C A CNDP1 Missense_Mutation p.S61R 0.17 deleterious(0) probably_damaging(1) TCGA-44-8117-01 18 72775371 72775371 G T ZNF407 Missense_Mutation p.Q1898H 0.76 deleterious(0) probably_damaging(0.996) TCGA-44-8117-01 18 77170446 77170446 G T NFATC1 Silent p.P44P 0.20 TCGA-44-8117-01 19 11022860 11022860 A G CARM1 Missense_Mutation p.I187V 0.25 tolerated(1) benign(0.001) TCGA-44-8117-01 19 11106926 11106926 A C SMARCA4 Missense_Mutation p.Q544P 0.25 probably_damaging(0.991) TCGA-44-8117-01 19 12090458 12090458 G T ZNF763 3'UTR 0.68 TCGA-44-8117-01 19 1235049 1235049 C T C19orf26 Missense_Mutation p.E136K 0.35 deleterious(0) probably_damaging(0.928) TCGA-44-8117-01 19 1482906 1482906 T C PCSK4 Missense_Mutation p.Y562C 0.63 tolerated(0.15) probably_damaging(0.95) TCGA-44-8117-01 19 16033242 16033242 T C CYP4F11 Splice_Site p.X307_splice 0.27 TCGA-44-8117-01 19 16060238 16060238 G A OR10H4 Missense_Mutation p.D141N 0.66 tolerated(0.34) benign(0.063) TCGA-44-8117-01 19 18727819 18727819 A G TMEM59L Missense_Mutation p.I191V 0.33 tolerated(0.41) benign(0.001) TCGA-44-8117-01 19 22156570 22156570 C A ZNF208 Missense_Mutation p.E422D 0.71 deleterious(0.02) benign(0.116) TCGA-44-8117-01 19 22271550 22271550 G C ZNF257 Missense_Mutation p.R333P 0.27 deleterious(0.03) possibly_damaging(0.711) TCGA-44-8117-01 19 22363839 22363839 C A ZNF676 Missense_Mutation p.C227F 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-44-8117-01 19 2827645 2827645 G T ZNF554 Missense_Mutation p.D53Y 0.68 tolerated(0.06) probably_damaging(0.971) TCGA-44-8117-01 19 36250845 36250845 C T C19orf55 Silent p.A88A 0.11 TCGA-44-8117-01 19 36349620 36349620 C A KIRREL2 Missense_Mutation p.P126T 0.68 tolerated(0.07) probably_damaging(0.979) TCGA-44-8117-01 19 39804836 39804836 C T LRFN1 Missense_Mutation p.A381T 0.15 deleterious(0.05) possibly_damaging(0.531) TCGA-44-8117-01 19 39860574 39860574 G T SAMD4B Missense_Mutation p.R159L 0.36 tolerated(0.33) benign(0.016) TCGA-44-8117-01 19 40540554 40540554 T A ZNF780B Missense_Mutation p.T738S 0.56 tolerated(1) possibly_damaging(0.636) TCGA-44-8117-01 19 4217038 4217038 C T ANKRD24 Silent p.A627A 0.79 TCGA-44-8117-01 19 45810791 45810791 G A CKM Silent p.L299L 0.34 TCGA-44-8117-01 19 48198245 48198245 C G GLTSCR1 Missense_Mutation p.P995R 0.75 possibly_damaging(0.897) TCGA-44-8117-01 19 49243513 49243513 G T RASIP1 Silent p.G9G 0.36 TCGA-44-8117-01 19 51452265 51452265 G C KLK5 Missense_Mutation p.P148A 0.53 tolerated(0.07) benign(0.045) TCGA-44-8117-01 19 51452266 51452266 G T KLK5 Missense_Mutation p.H147Q 0.53 deleterious(0.01) benign(0.007) TCGA-44-8117-01 19 51503426 51503426 G A KLK8 Missense_Mutation p.P152S 0.31 deleterious(0) probably_damaging(0.998) TCGA-44-8117-01 19 5220016 5220016 G A PTPRS Silent p.N1233N 0.41 TCGA-44-8117-01 19 53793412 53793412 C A BIRC8 Missense_Mutation p.E72D 0.60 deleterious(0.02) benign(0.341) TCGA-44-8117-01 19 54385842 54385842 G A PRKCG Missense_Mutation p.E32K 0.34 tolerated(0.1) benign(0.048) TCGA-44-8117-01 19 54802764 54802764 G A LILRA3 Missense_Mutation p.P226L 0.53 deleterious(0.01) possibly_damaging(0.86) TCGA-44-8117-01 19 54802765 54802765 G T LILRA3 Missense_Mutation p.P226T 0.53 deleterious(0) possibly_damaging(0.823) TCGA-44-8117-01 19 54867009 54867009 C A LAIR1 Silent p.G244G 0.28 TCGA-44-8117-01 19 55663164 55663164 A C TNNI3 3'UTR 0.57 TCGA-44-8117-01 19 56369428 56369428 G T NLRP4 Silent p.P223P 0.67 TCGA-44-8117-01 19 58361416 58361416 G T ZNF587 Missense_Mutation p.A4S 0.49 deleterious(0.03) benign(0.006) TCGA-44-8117-01 19 746537 746537 C A PALM Missense_Mutation p.P296H 0.85 deleterious(0.04) benign(0.14) TCGA-44-8117-01 19 9014701 9014701 G T MUC16 Silent p.S12758S 0.37 TCGA-44-8117-01 1 103468348 103468348 C T COL11A1 Splice_Site p.X667_splice 0.34 TCGA-44-8117-01 1 103470216 103470216 C T COL11A1 Missense_Mutation p.G616D 0.35 unknown(0) TCGA-44-8117-01 1 103544317 103544317 C A COL11A1 Missense_Mutation p.V129F 0.41 probably_damaging(0.993) TCGA-44-8117-01 1 108247659 108247659 T A VAV3 Silent p.A509A 0.53 TCGA-44-8117-01 1 109813154 109813154 G A CELSR2 Missense_Mutation p.R2472H 0.23 deleterious(0) probably_damaging(0.998) TCGA-44-8117-01 1 114940607 114940607 C T TRIM33 Missense_Mutation p.M1042I 0.42 tolerated(0.18) benign(0.258) TCGA-44-8117-01 1 11584111 11584111 G T PTCHD2 Missense_Mutation p.Q825H 0.44 deleterious_low_confidence(0.02) possibly_damaging(0.73) TCGA-44-8117-01 1 117554557 117554557 C T CD101 Silent p.T270T 0.11 TCGA-44-8117-01 1 119964561 119964561 T A HSD3B2 Missense_Mutation p.L146Q 0.48 deleterious(0.03) possibly_damaging(0.616) TCGA-44-8117-01 1 144903113 144903113 G A PDE4DIP Missense_Mutation p.R927C 0.14 tolerated(0.19) probably_damaging(1) TCGA-44-8117-01 1 152187759 152187759 G T HRNR Missense_Mutation p.Q2116K 0.03 unknown(0) TCGA-44-8117-01 1 152328348 152328348 C A FLG2 Missense_Mutation p.Q638H 0.43 unknown(0) TCGA-44-8117-01 1 152328646 152328646 C A FLG2 Missense_Mutation p.R539L 0.48 unknown(0) TCGA-44-8117-01 1 152732863 152732863 C T KPRP Missense_Mutation p.R267C 0.27 deleterious(0) probably_damaging(0.982) TCGA-44-8117-01 1 1558937 1558937 G T MIB2 Silent p.T150T 0.33 TCGA-44-8117-01 1 156821891 156821891 G T INSRR Missense_Mutation p.R244S 0.37 tolerated(0.85) benign(0.004) TCGA-44-8117-01 1 157559052 157559052 G C FCRL4 Nonsense_Mutation p.Y83* 0.48 TCGA-44-8117-01 1 158646067 158646067 T C SPTA1 Missense_Mutation p.K326E 0.38 tolerated(1) possibly_damaging(0.734) TCGA-44-8117-01 1 158669978 158669978 G T OR6K2 Silent p.P155P 0.36 TCGA-44-8117-01 1 158687537 158687537 G A OR6K3 Silent p.Y123Y 0.14 TCGA-44-8117-01 1 158747354 158747354 C A OR6N2 Missense_Mutation p.R24S 0.21 tolerated(0.77) benign(0.004) TCGA-44-8117-01 1 158813837 158813837 C G MNDA Missense_Mutation p.S165R 0.33 tolerated(0.08) possibly_damaging(0.873) TCGA-44-8117-01 1 160165728 160165728 C T CASQ1 Silent p.F231F 0.53 TCGA-44-8117-01 1 160209657 160209657 G A DCAF8 Silent p.L185L 0.44 TCGA-44-8117-01 1 160209659 160209659 C A DCAF8 Missense_Mutation p.R184L 0.45 tolerated(0.18) benign(0.01) TCGA-44-8117-01 1 160769811 160769811 C A LY9 Silent p.A131A 0.41 TCGA-44-8117-01 1 165397989 165397989 T A RXRG Silent p.P88P 0.10 TCGA-44-8117-01 1 167023626 167023626 C A GPA33 Missense_Mutation p.R302M 0.27 tolerated(0.07) possibly_damaging(0.635) TCGA-44-8117-01 1 167095285 167095285 G T DUSP27 Missense_Mutation p.G306V 0.39 deleterious(0) possibly_damaging(0.873) TCGA-44-8117-01 1 167096313 167096313 G A DUSP27 Missense_Mutation p.D649N 0.08 deleterious(0.04) benign(0.015) TCGA-44-8117-01 1 167097284 167097284 G T DUSP27 Missense_Mutation p.E972D 0.15 tolerated(0.62) benign(0.008) TCGA-44-8117-01 1 167487737 167487737 G A CD247 5'UTR 0.16 TCGA-44-8117-01 1 167825400 167825400 T A ADCY10 Intron 0.11 TCGA-44-8117-01 1 169578892 169578892 C G SELP Missense_Mutation p.G395R 0.12 deleterious(0) probably_damaging(0.999) TCGA-44-8117-01 1 171173102 171173102 G A FMO2 Missense_Mutation p.M242I 0.18 tolerated(0.11) benign(0.345) TCGA-44-8117-01 1 172571315 172571315 A G SUCO Missense_Mutation p.I1044V 0.32 tolerated(0.62) benign(0.001) TCGA-44-8117-01 1 174190137 174190137 G T RABGAP1L Nonsense_Mutation p.E56* 0.12 TCGA-44-8117-01 1 174190138 174190138 A T RABGAP1L Missense_Mutation p.E56V 0.12 deleterious(0.01) possibly_damaging(0.67) TCGA-44-8117-01 1 175066810 175066810 G T TNN Missense_Mutation p.A616S 0.45 deleterious(0.01) possibly_damaging(0.656) TCGA-44-8117-01 1 175097170 175097170 G A TNN Silent p.E1016E 0.45 TCGA-44-8117-01 1 17681031 17681031 C A PADI4 Missense_Mutation p.P387T 0.23 deleterious(0) probably_damaging(0.999) TCGA-44-8117-01 1 177247912 177247912 C A BRINP2 Missense_Mutation p.P409H 0.16 deleterious(0) probably_damaging(0.915) TCGA-44-8117-01 1 178252803 178252803 G T RASAL2 Missense_Mutation p.V103L 0.12 tolerated(0.79) benign(0.138) TCGA-44-8117-01 1 179965881 179965881 T C CEP350 Silent p.L197L 0.27 TCGA-44-8117-01 1 180017793 180017793 A G CEP350 Missense_Mutation p.D1582G 0.55 possibly_damaging(0.566) TCGA-44-8117-01 1 181702053 181702053 A T CACNA1E Missense_Mutation p.Q944L 0.21 tolerated(0.08) benign(0.069) TCGA-44-8117-01 1 181727135 181727135 C T CACNA1E Missense_Mutation p.P1461L 0.13 deleterious(0) possibly_damaging(0.726) TCGA-44-8117-01 1 184446595 184446595 G C C1orf21 5'UTR 0.34 TCGA-44-8117-01 1 184764098 184764098 C A FAM129A 3'UTR 0.12 TCGA-44-8117-01 1 186908219 186908219 G C PLA2G4A Missense_Mutation p.V259L 0.23 deleterious(0.01) possibly_damaging(0.897) TCGA-44-8117-01 1 192335243 192335243 C A RGS21 Missense_Mutation p.P150T 0.64 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-8117-01 1 192335244 192335244 C A RGS21 Missense_Mutation p.P150H 0.66 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-8117-01 1 193150382 193150382 A T B3GALT2 Missense_Mutation p.L104Q 0.18 tolerated(0.31) benign(0.064) TCGA-44-8117-01 1 19454222 19454222 C G UBR4 Missense_Mutation p.K3041N 0.26 benign(0.036) TCGA-44-8117-01 1 196963386 196963386 G T CFHR5 Nonsense_Mutation p.G203* 0.56 TCGA-44-8117-01 1 200017460 200017460 C T NR5A2 Silent p.T208T 0.18 TCGA-44-8117-01 1 201196047 201196047 C A IGFN1 Silent p.P3608P 0.18 TCGA-44-8117-01 1 201291196 201291196 G A PKP1 Missense_Mutation p.A501T 0.11 tolerated(0.18) benign(0.005) TCGA-44-8117-01 1 20304610 20304610 A G PLA2G2A Missense_Mutation p.C64R 0.19 deleterious(0) probably_damaging(1) TCGA-44-8117-01 1 203140658 203140658 C G MYBPH Missense_Mutation p.D216H 0.14 deleterious(0.01) probably_damaging(0.957) TCGA-44-8117-01 1 205156769 205156769 C T DSTYK Missense_Mutation p.S144N 0.11 tolerated(0.43) benign(0.001) TCGA-44-8117-01 1 206634847 206634847 G T SRGAP2 3'UTR 0.21 TCGA-44-8117-01 1 208062810 208062810 C A CD34 Nonsense_Mutation p.E252* 0.56 TCGA-44-8117-01 1 209907803 209907803 C A HSD11B1 Nonsense_Mutation p.C272* 0.52 TCGA-44-8117-01 1 209969729 209969729 C A IRF6 Missense_Mutation p.D115Y 0.11 deleterious(0) probably_damaging(0.968) TCGA-44-8117-01 1 210273386 210273386 G T SYT14 Missense_Mutation p.Q293H 0.19 tolerated(0.13) benign(0.142) TCGA-44-8117-01 1 211192330 211192330 G C KCNH1 Missense_Mutation p.P276R 0.20 deleterious(0) possibly_damaging(0.79) TCGA-44-8117-01 1 214560255 214560255 T G PTPN14 Missense_Mutation p.Q333P 0.18 tolerated(0.24) benign(0.004) TCGA-44-8117-01 1 216052424 216052424 G - USH2A Frame_Shift_Del p.P2747Hfs*22 0.09 TCGA-44-8117-01 1 216062018 216062018 G T USH2A Missense_Mutation p.T2658K 0.18 possibly_damaging(0.549) TCGA-44-8117-01 1 216251555 216251555 C G USH2A Silent p.V1816V 0.16 TCGA-44-8117-01 1 220089204 220089204 G T SLC30A10 Missense_Mutation p.L349M 0.62 deleterious(0) probably_damaging(0.98) TCGA-44-8117-01 1 22165500 22165500 T A HSPG2 Missense_Mutation p.H3323L 0.22 probably_damaging(0.977) TCGA-44-8117-01 1 228444428 228444428 C A OBSCN Silent p.L1554L 0.16 TCGA-44-8117-01 1 228444447 228444447 G T OBSCN Missense_Mutation p.A1561S 0.15 possibly_damaging(0.535) TCGA-44-8117-01 1 229779278 229779278 A G URB2 Splice_Site p.X1212_splice 0.18 TCGA-44-8117-01 1 231349600 231349600 G A TRIM67 Silent p.V721V 0.57 TCGA-44-8117-01 1 231700528 231700528 G A TSNAX Silent p.L250L 0.36 TCGA-44-8117-01 1 233386536 233386536 T G PCNXL2 Missense_Mutation p.E724A 0.48 deleterious(0.01) benign(0.441) TCGA-44-8117-01 1 233750011 233750011 C T KCNK1 Missense_Mutation p.L32F 0.57 tolerated(0.07) benign(0.071) TCGA-44-8117-01 1 236737628 236737628 T A HEATR1 Silent p.T1111T 0.53 TCGA-44-8117-01 1 236914775 236914775 G T ACTN2 Silent p.L554L 0.13 TCGA-44-8117-01 1 237936817 237936817 C A RYR2 Intron 0.10 TCGA-44-8117-01 1 237947774 237947774 C A RYR2 Silent p.T4254T 0.56 TCGA-44-8117-01 1 242287871 242287871 T G PLD5 Silent p.R278R 0.32 TCGA-44-8117-01 1 245022670 245022670 C A HNRNPU Nonsense_Mutation p.E342* 0.32 TCGA-44-8117-01 1 245865834 245865834 G A KIF26B Missense_Mutation p.E2085K 0.28 deleterious(0) unknown(0) TCGA-44-8117-01 1 247587690 247587690 A T NLRP3 Silent p.I315I 0.42 TCGA-44-8117-01 1 247902502 247902502 G T OR14K1 Missense_Mutation p.V196F 0.17 tolerated(0.24) possibly_damaging(0.889) TCGA-44-8117-01 1 248059119 248059119 C A OR2W3 Silent p.S77S 0.41 TCGA-44-8117-01 1 248436683 248436683 G T OR2T33 Nonsense_Mutation p.S145* 0.29 TCGA-44-8117-01 1 248551360 248551360 G T OR2T6 Missense_Mutation p.G151C 0.19 tolerated(0.07) probably_damaging(1) TCGA-44-8117-01 1 248790120 248790120 T C OR2T11 Missense_Mutation p.M104V 0.22 deleterious(0.04) benign(0.002) TCGA-44-8117-01 1 28293446 28293446 C A XKR8 Missense_Mutation p.S308Y 0.47 tolerated(0.53) possibly_damaging(0.482) TCGA-44-8117-01 1 29609213 29609213 G T PTPRU Nonsense_Mutation p.E632* 0.20 TCGA-44-8117-01 1 34166217 34166217 C A CSMD2 Missense_Mutation p.E1171D 0.27 tolerated(0.21) benign(0.052) TCGA-44-8117-01 1 43909091 43909091 C T SZT2 Silent p.F2799F 0.06 TCGA-44-8117-01 1 46073451 46073451 G T NASP Missense_Mutation p.G290C 0.62 deleterious_low_confidence(0.04) benign(0.02) TCGA-44-8117-01 1 55591178 55591178 C T USP24 Missense_Mutation p.D1259N 0.32 tolerated(0.13) benign(0.051) TCGA-44-8117-01 1 57158076 57158076 G A PRKAA2 Missense_Mutation p.A126T 0.49 deleterious(0.03) possibly_damaging(0.889) TCGA-44-8117-01 1 57480983 57480983 G T DAB1 Silent p.I339I 0.27 TCGA-44-8117-01 1 57499107 57499107 C A DAB1 Intron 0.45 TCGA-44-8117-01 1 62718808 62718808 C T KANK4 Silent p.E871E 0.21 TCGA-44-8117-01 1 66075766 66075766 A T LEPR Missense_Mutation p.Y630F 0.34 deleterious(0.04) possibly_damaging(0.544) TCGA-44-8117-01 1 66458592 66458592 G C PDE4B Intron 0.16 TCGA-44-8117-01 1 67206371 67206371 G T SGIP1 Missense_Mutation p.K755N 0.17 deleterious(0.04) benign(0.069) TCGA-44-8117-01 1 70504989 70504989 C T LRRC7 Missense_Mutation p.T1123I 0.34 deleterious(0.01) benign(0.287) TCGA-44-8117-01 1 75038011 75038011 T A C1orf173 Missense_Mutation p.N1128I 0.35 deleterious(0.05) benign(0.188) TCGA-44-8117-01 1 75055242 75055242 G T C1orf173 Intron 0.21 TCGA-44-8117-01 1 76877699 76877699 C A ST6GALNAC3 Missense_Mutation p.Q74K 0.18 benign(0.008) TCGA-44-8117-01 1 79402054 79402054 A G ELTD1 Missense_Mutation p.I268T 0.48 tolerated(0.62) benign(0.004) TCGA-44-8117-01 1 82437596 82437596 T C LPHN2 Silent p.I988I 0.23 TCGA-44-8117-01 1 86939171 86939171 C T CLCA1 Silent p.A78A 0.39 TCGA-44-8117-01 1 87038380 87038380 G A CLCA4 Missense_Mutation p.D482N 0.37 tolerated(0.38) benign(0.003) TCGA-44-8117-01 1 89449133 89449133 C A RBMXL1 Missense_Mutation p.G126V 0.42 tolerated(0.1) possibly_damaging(0.558) TCGA-44-8117-01 1 89843662 89843662 G C GBP6 Missense_Mutation p.G107R 0.24 deleterious(0.01) benign(0.383) TCGA-44-8117-01 1 91180207 91180207 G C BARHL2 Silent p.L244L 0.40 TCGA-44-8117-01 1 92446459 92446459 A G BRDT Missense_Mutation p.R492G 0.20 tolerated(0.43) benign(0.002) TCGA-44-8117-01 1 93965084 93965084 T A FNBP1L Nonsense_Mutation p.Y28* 0.19 TCGA-44-8117-01 1 94312397 94312397 C T BCAR3 Intron 0.33 TCGA-44-8117-01 1 949579 949579 G T ISG15 Silent p.L73L 0.14 TCGA-44-8117-01 20 17417358 17417358 C A PCSK2 Silent p.R239R 0.22 TCGA-44-8117-01 20 2774957 2774957 G T CPXM1 Missense_Mutation p.P695H 0.48 tolerated(0.18) benign(0.036) TCGA-44-8117-01 20 2777742 2777742 T C CPXM1 Splice_Site p.X278_splice 0.48 TCGA-44-8117-01 20 30602736 30602736 G T CCM2L Silent p.V20V 0.30 TCGA-44-8117-01 20 31672767 31672767 G A BPIFB4 Silent p.L249L 0.43 TCGA-44-8117-01 20 35068259 35068259 C G DLGAP4 Missense_Mutation p.S448R 0.17 deleterious(0) possibly_damaging(0.51) TCGA-44-8117-01 20 39832588 39832588 G A ZHX3 Silent p.F323F 0.16 TCGA-44-8117-01 20 47611011 47611011 G C ARFGEF2 Silent p.L999L 0.16 TCGA-44-8117-01 20 47611012 47611012 G T ARFGEF2 Nonsense_Mutation p.E1000* 0.15 TCGA-44-8117-01 20 48252729 48252729 C A B4GALT5 3'UTR 0.75 TCGA-44-8117-01 20 49620777 49620777 G A KCNG1 Silent p.S447S 0.03 TCGA-44-8117-01 20 55758884 55758884 C T BMP7 Silent p.T284T 0.21 TCGA-44-8117-01 20 57036341 57036341 G T APCDD1L Silent p.T337T 0.58 TCGA-44-8117-01 20 57428478 57428478 C A GNAS Missense_Mutation p.P53Q 0.78 deleterious_low_confidence(0) unknown(0) TCGA-44-8117-01 20 57429241 57429241 C A GNAS Silent p.P307P 0.13 TCGA-44-8117-01 20 58322877 58322877 G C PHACTR3 Missense_Mutation p.E115D 0.14 tolerated(0.05) benign(0.005) TCGA-44-8117-01 20 58645681 58645681 C G C20orf197 Nonsense_Mutation p.Y33* 0.35 TCGA-44-8117-01 20 7864221 7864221 G T HAO1 3'UTR 0.34 TCGA-44-8117-01 21 11039271 11039271 G A BAGE2 RNA 0.05 TCGA-44-8117-01 21 19638270 19638270 G T CHODL Splice_Site p.X246_splice 0.18 TCGA-44-8117-01 21 19732104 19732104 C A TMPRSS15 Nonsense_Mutation p.E284* 0.18 TCGA-44-8117-01 21 27066140 27066140 G A JAM2 Missense_Mutation p.G105E 0.26 deleterious(0) probably_damaging(0.999) TCGA-44-8117-01 21 28306975 28306975 G A ADAMTS5 Missense_Mutation p.T500I 0.48 tolerated(0.56) possibly_damaging(0.453) TCGA-44-8117-01 21 30315659 30315659 C A LTN1 Splice_Site p.X1453_splice 0.48 TCGA-44-8117-01 21 31023488 31023488 G T GRIK1 Missense_Mutation p.L302M 0.49 tolerated(0.1) probably_damaging(0.924) TCGA-44-8117-01 21 31538266 31538266 C A CLDN17 Missense_Mutation p.V224F 0.16 deleterious(0) possibly_damaging(0.726) TCGA-44-8117-01 21 31768904 31768904 G T KRTAP13-1 Missense_Mutation p.G167V 0.19 deleterious(0.02) benign(0.42) TCGA-44-8117-01 21 32253373 32253373 G T KRTAP11-1 Silent p.S157S 0.20 TCGA-44-8117-01 21 41539189 41539189 G T DSCAM Missense_Mutation p.H992N 0.40 tolerated(0.48) benign(0.002) TCGA-44-8117-01 21 42729094 42729094 A T FAM3B Silent p.I226I 0.48 TCGA-44-8117-01 21 45810794 45810794 G T TRPM2 Silent p.R442R 0.26 TCGA-44-8117-01 21 45959472 45959472 G T KRTAP10-1 Missense_Mutation p.R188S 0.25 tolerated(0.14) unknown(0) TCGA-44-8117-01 21 47531946 47531946 G T COL6A2 Missense_Mutation p.V57F 0.48 deleterious(0) possibly_damaging(0.705) TCGA-44-8117-01 22 23077547 23077547 C G IGLV2-18 Nonsense_Mutation p.Y108* 0.59 TCGA-44-8117-01 22 29886089 29886089 G T NEFH Silent p.V820V 0.09 TCGA-44-8117-01 22 31741600 31741600 C G PATZ1 5'UTR 0.71 TCGA-44-8117-01 22 33245471 33245471 G T TIMP3 Missense_Mutation p.V52L 0.68 tolerated(0.11) benign(0) TCGA-44-8117-01 22 33402437 33402437 G T SYN3 Missense_Mutation p.P71T 0.10 tolerated(1) unknown(0) TCGA-44-8117-01 22 35947590 35947590 G T RASD2 Missense_Mutation p.E104D 0.71 tolerated(0.73) benign(0.006) TCGA-44-8117-01 22 37578450 37578450 C A C1QTNF6 Silent p.T205T 0.19 TCGA-44-8117-01 22 39218742 39218742 G T NPTXR Missense_Mutation p.L459M 0.56 tolerated(0.37) probably_damaging(0.921) TCGA-44-8117-01 22 42139192 42139192 G T MEI1 Missense_Mutation p.R480S 0.50 deleterious(0.03) benign(0.154) TCGA-44-8117-01 22 44532399 44532399 G T PARVB Splice_Site p.X264_splice 0.17 TCGA-44-8117-01 22 44681617 44681617 G T KIAA1644 Missense_Mutation p.T97N 0.13 tolerated(0.24) possibly_damaging(0.772) TCGA-44-8117-01 22 50523302 50523302 C A MLC1 Silent p.L10L 0.45 TCGA-44-8117-01 2 100623841 100623841 T A AFF3 Nonsense_Mutation p.R111* 0.26 TCGA-44-8117-01 2 101924959 101924959 C A RNF149 Missense_Mutation p.R31L 0.68 tolerated(0.32) benign(0.048) TCGA-44-8117-01 2 105858714 105858714 C T GPR45 Silent p.F133F 0.54 TCGA-44-8117-01 2 105859054 105859054 C A GPR45 Silent p.R247R 0.24 TCGA-44-8117-01 2 107040316 107040316 T C RGPD3 Silent p.K1369K 0.31 TCGA-44-8117-01 2 109988086 109988086 G A SH3RF3 Silent p.A298A 0.51 TCGA-44-8117-01 2 11053758 11053758 C A KCNF1 Silent p.I402I 0.44 TCGA-44-8117-01 2 112545812 112545812 G A ANAPC1 Missense_Mutation p.R1600W 0.26 deleterious(0) probably_damaging(0.932) TCGA-44-8117-01 2 114392672 114392672 G T RABL2A Missense_Mutation p.A88S 0.25 tolerated(0.08) benign(0.088) TCGA-44-8117-01 2 118579753 118579753 C A DDX18 Missense_Mutation p.Q328K 0.19 tolerated(0.68) benign(0.26) TCGA-44-8117-01 2 125521642 125521642 C T CNTNAP5 Silent p.S816S 0.48 TCGA-44-8117-01 2 125671743 125671743 C T CNTNAP5 Nonsense_Mutation p.Q1267* 0.16 TCGA-44-8117-01 2 128772485 128772485 G T SAP130 Missense_Mutation p.H197N 0.33 deleterious_low_confidence(0.02) probably_damaging(0.988) TCGA-44-8117-01 2 130877930 130877930 A T POTEF Silent p.A53A 0.20 TCGA-44-8117-01 2 130897828 130897828 C G CCDC74B Missense_Mutation p.R267P 0.25 deleterious(0.03) probably_damaging(0.991) TCGA-44-8117-01 2 131116539 131116539 G T PTPN18 Missense_Mutation p.V65L 0.34 deleterious(0.02) probably_damaging(0.932) TCGA-44-8117-01 2 131356324 131356324 G T CFC1 Missense_Mutation p.H46Q 0.23 tolerated(0.5) benign(0.002) TCGA-44-8117-01 2 131878479 131878479 T G PLEKHB2 Intron 0.35 TCGA-44-8117-01 2 133887622 133887622 C A NCKAP5 Missense_Mutation p.R90L 0.50 deleterious(0) probably_damaging(0.993) TCGA-44-8117-01 2 135170566 135170566 G T MGAT5 Missense_Mutation p.G553C 0.55 deleterious(0) probably_damaging(1) TCGA-44-8117-01 2 136623775 136623775 C A MCM6 Missense_Mutation p.R285L 0.44 deleterious(0) benign(0.168) TCGA-44-8117-01 2 141113986 141113986 T A LRP1B Missense_Mutation p.N3819Y 0.28 possibly_damaging(0.703) TCGA-44-8117-01 2 157186608 157186608 T A NR4A2 Missense_Mutation p.S31C 0.60 deleterious(0.01) possibly_damaging(0.88) TCGA-44-8117-01 2 160735149 160735149 A G LY75-CD302 Silent p.T533T 0.05 TCGA-44-8117-01 2 160801417 160801417 C G PLA2R1 Missense_Mutation p.D1382H 0.37 deleterious(0.01) possibly_damaging(0.633) TCGA-44-8117-01 2 167992448 167992448 G T XIRP2 Silent p.S146S 0.27 TCGA-44-8117-01 2 168110665 168110665 A G XIRP2 3'UTR 0.12 TCGA-44-8117-01 2 169780291 169780291 G T ABCB11 Silent p.T1269T 0.23 TCGA-44-8117-01 2 175613379 175613380 - G CHRNA1 Frame_Shift_Ins p.E416Rfs*23 0.23 TCGA-44-8117-01 2 17699575 17699575 G T RAD51AP2 Silent p.L36L 0.21 TCGA-44-8117-01 2 178682626 178682626 C A PDE11A Missense_Mutation p.D535Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-44-8117-01 2 178936638 178936638 A T PDE11A Missense_Mutation p.L176Q 0.29 deleterious(0) possibly_damaging(0.902) TCGA-44-8117-01 2 179424827 179424827 C T TTN Missense_Mutation p.D28678N 0.14 TCGA-44-8117-01 2 179442794 179442794 G A TTN Silent p.F22816F 0.29 TCGA-44-8117-01 2 179592033 179592033 G T TTN Missense_Mutation p.L6687I 0.38 TCGA-44-8117-01 2 179669312 179669312 C A TTN Missense_Mutation p.G20C 0.24 TCGA-44-8117-01 2 182543116 182543116 G T NEUROD1 Missense_Mutation p.R158S 0.28 tolerated(0.05) benign(0.143) TCGA-44-8117-01 2 183387062 183387062 G T PDE1A Silent p.T14T 0.25 TCGA-44-8117-01 2 188225460 188225460 G T CALCRL Missense_Mutation p.Q216K 0.37 tolerated(0.24) benign(0.158) TCGA-44-8117-01 2 198641836 198641836 A C BOLL Missense_Mutation p.Y87D 0.21 deleterious(0) possibly_damaging(0.826) TCGA-44-8117-01 2 201722455 201722455 C A CLK1 Missense_Mutation p.C315F 0.25 tolerated(0.1) probably_damaging(0.954) TCGA-44-8117-01 2 202737050 202737050 G T CDK15 Splice_Site p.X353_splice 0.38 TCGA-44-8117-01 2 204003370 204003370 G T NBEAL1 Missense_Mutation p.D1554Y 0.31 deleterious(0) probably_damaging(0.946) TCGA-44-8117-01 2 204591649 204591649 G T CD28 Missense_Mutation p.V116F 0.24 tolerated(0.09) benign(0.198) TCGA-44-8117-01 2 211455590 211455590 G T CPS1 Missense_Mutation p.A309S 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-44-8117-01 2 211456628 211456628 T A CPS1 Missense_Mutation p.L347M 0.19 deleterious(0) possibly_damaging(0.576) TCGA-44-8117-01 2 215884487 215884487 A T ABCA12 Missense_Mutation p.C441S 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-44-8117-01 2 217280185 217280185 G T SMARCAL1 Missense_Mutation p.G253V 0.34 deleterious(0) probably_damaging(0.999) TCGA-44-8117-01 2 219694895 219694895 A T PRKAG3 Missense_Mutation p.C147S 0.24 tolerated(0.4) benign(0) TCGA-44-8117-01 2 219854914 219854914 C A CRYBA2 3'UTR 0.26 TCGA-44-8117-01 2 220419218 220419218 G A OBSL1 Silent p.C1618C 0.35 TCGA-44-8117-01 2 223554070 223554070 G C MOGAT1 Silent p.G120G 0.47 TCGA-44-8117-01 2 227731941 227731941 G T RHBDD1 Missense_Mutation p.C158F 0.27 tolerated(0.7) benign(0.004) TCGA-44-8117-01 2 228497827 228497827 C A C2orf83 5'UTR 0.31 TCGA-44-8117-01 2 228882079 228882079 A G SPHKAP Missense_Mutation p.M1164T 0.33 deleterious(0) benign(0.206) TCGA-44-8117-01 2 229046328 229046328 C A SPHKAP 5'UTR 0.31 TCGA-44-8117-01 2 233348873 233348873 C A ECEL1 Silent p.P415P 0.26 TCGA-44-8117-01 2 233422637 233422637 A C EIF4E2 Missense_Mutation p.Y60S 0.32 deleterious(0.02) probably_damaging(0.965) TCGA-44-8117-01 2 234678206 234678206 G A UGT1A10 Intron 0.20 TCGA-44-8117-01 2 242149781 242149781 G T ANO7 Missense_Mutation p.R531S 0.23 tolerated(0.45) benign(0.098) TCGA-44-8117-01 2 242814102 242814102 C A CXXC11 Missense_Mutation p.P132Q 0.50 tolerated(0.14) probably_damaging(0.979) TCGA-44-8117-01 2 26676352 26676352 G T DRC1 Missense_Mutation p.W618C 0.41 tolerated(0.18) benign(0.195) TCGA-44-8117-01 2 29294463 29294463 G T C2orf71 Missense_Mutation p.L889M 0.51 tolerated(0.55) benign(0.022) TCGA-44-8117-01 2 33824342 33824342 C A FAM98A 5'UTR 0.37 TCGA-44-8117-01 2 36775885 36775885 A G CRIM1 3'UTR 0.12 TCGA-44-8117-01 2 39406334 39406334 G T CDKL4 Silent p.R307R 0.16 TCGA-44-8117-01 2 40342531 40342531 C A SLC8A1 Silent p.R928R 0.18 TCGA-44-8117-01 2 44428948 44428948 G T PPM1B Missense_Mutation p.D204Y 0.40 deleterious(0) probably_damaging(1) TCGA-44-8117-01 2 50724588 50724588 A C NRXN1 Missense_Mutation p.L961W 0.27 deleterious(0) probably_damaging(0.999) TCGA-44-8117-01 2 51254790 51254790 G C NRXN1 Missense_Mutation p.P208A 0.31 tolerated(0.79) benign(0.001) TCGA-44-8117-01 2 69601245 69601245 C A GFPT1 Missense_Mutation p.G3V 0.28 deleterious(0) probably_damaging(1) TCGA-44-8117-01 2 72361975 72361975 T A CYP26B1 Missense_Mutation p.Q259L 0.24 tolerated(0.06) benign(0.009) TCGA-44-8117-01 2 73053082 73053082 C G EXOC6B 5'UTR 0.40 TCGA-44-8117-01 2 73316374 73316374 C A RAB11FIP5 Missense_Mutation p.Q167H 0.20 deleterious(0) probably_damaging(0.993) TCGA-44-8117-01 2 77746096 77746096 C A LRRTM4 Missense_Mutation p.W300L 0.26 tolerated(0.08) probably_damaging(0.999) TCGA-44-8117-01 2 80874899 80874899 C A CTNNA2 Missense_Mutation p.P874T 0.44 deleterious(0.01) benign(0.363) TCGA-44-8117-01 2 88751509 88751509 G T FOXI3 RNA 0.30 TCGA-44-8117-01 2 89544404 89544404 A G IGKV2-30 Missense_Mutation p.Y74H 0.26 deleterious(0.03) benign(0.146) TCGA-44-8117-01 2 90249342 90249342 C T IGKV1D-43 Silent p.L100L 0.25 TCGA-44-8117-01 2 96789882 96789882 C T ASTL Missense_Mutation p.V335I 0.12 tolerated_low_confidence(0.65) benign(0.002) TCGA-44-8117-01 3 100994515 100994515 C A IMPG2 Nonsense_Mutation p.E220* 0.66 TCGA-44-8117-01 3 107096825 107096825 G T CCDC54 Nonsense_Mutation p.E131* 0.29 TCGA-44-8117-01 3 119582379 119582379 C A GSK3B Missense_Mutation p.R341L 0.56 deleterious(0) probably_damaging(1) TCGA-44-8117-01 3 120469411 120469411 A T GTF2E1 Silent p.P4P 0.65 TCGA-44-8117-01 3 123418942 123418942 G T MYLK Missense_Mutation p.P1125T 0.24 deleterious(0.01) benign(0.008) TCGA-44-8117-01 3 123512524 123512524 C A MYLK Silent p.R55R 0.28 TCGA-44-8117-01 3 130425866 130425866 C A PIK3R4 Missense_Mutation p.V883L 0.66 tolerated(0.73) benign(0) TCGA-44-8117-01 3 130425867 130425867 C A PIK3R4 Missense_Mutation p.E882D 0.65 tolerated(0.55) benign(0.002) TCGA-44-8117-01 3 13393654 13393654 T C NUP210 Missense_Mutation p.I887V 0.70 tolerated(1) benign(0.008) TCGA-44-8117-01 3 154862150 154862150 C T MME Silent p.V440V 0.26 TCGA-44-8117-01 3 155571259 155571259 C A SLC33A1 Silent p.V176V 0.56 TCGA-44-8117-01 3 167170811 167170811 C G SERPINI2 Missense_Mutation p.E293Q 0.26 deleterious(0.02) possibly_damaging(0.71) TCGA-44-8117-01 3 173997119 173997119 G A NLGN1 Nonsense_Mutation p.W443* 0.58 TCGA-44-8117-01 3 173997121 173997121 G A NLGN1 Missense_Mutation p.A444T 0.59 tolerated(0.08) probably_damaging(0.923) TCGA-44-8117-01 3 184800918 184800918 T C C3orf70 Silent p.G210G 0.33 TCGA-44-8117-01 3 195515641 195515641 G T MUC4 Missense_Mutation p.P937H 0.18 unknown(0) TCGA-44-8117-01 3 197239157 197239157 C A BDH1 Missense_Mutation p.G214V 0.68 deleterious(0) probably_damaging(0.994) TCGA-44-8117-01 3 19975155 19975155 C A EFHB Missense_Mutation p.G119V 0.65 tolerated_low_confidence(0.16) benign(0.022) TCGA-44-8117-01 3 35780974 35780974 G A ARPP21 Missense_Mutation p.G605R 0.42 deleterious(0.01) benign(0.394) TCGA-44-8117-01 3 36898986 36898986 C A TRANK1 Missense_Mutation p.V699F 0.50 tolerated(0.07) benign(0.235) TCGA-44-8117-01 3 424284 424284 C A CHL1 Silent p.V702V 0.37 TCGA-44-8117-01 3 53694292 53694292 A T CACNA1D Silent p.S252S 0.45 TCGA-44-8117-01 3 69171325 69171325 A T LMOD3 Silent p.L71L 0.21 TCGA-44-8117-01 3 71008410 71008410 C A FOXP1 Missense_Mutation p.E676D 0.58 deleterious_low_confidence(0.03) benign(0.002) TCGA-44-8117-01 3 73673772 73673772 G T PDZRN3 Missense_Mutation p.L69M 0.38 deleterious(0) probably_damaging(0.99) TCGA-44-8117-01 3 7620479 7620479 G T GRM7 Missense_Mutation p.S629I 0.54 deleterious(0) probably_damaging(0.998) TCGA-44-8117-01 3 78717674 78717674 G A ROBO1 Silent p.P530P 0.22 TCGA-44-8117-01 3 9027361 9027361 C A SRGAP3 Missense_Mutation p.A1048S 0.69 tolerated_low_confidence(0.29) benign(0.081) TCGA-44-8117-01 3 97167418 97167418 G T EPHA6 Nonsense_Mutation p.E580* 0.59 TCGA-44-8117-01 3 99879332 99879332 G T CMSS1 Missense_Mutation p.R71M 0.67 deleterious(0.01) possibly_damaging(0.793) TCGA-44-8117-01 4 101439137 101439137 C A EMCN 5'UTR 0.61 TCGA-44-8117-01 4 104067201 104067201 T C CENPE Missense_Mutation p.T1400A 0.13 benign(0.009) TCGA-44-8117-01 4 109681462 109681462 C A ETNPPL Silent p.G19G 0.46 TCGA-44-8117-01 4 125591989 125591989 T C ANKRD50 Missense_Mutation p.R815G 0.31 deleterious(0) probably_damaging(0.997) TCGA-44-8117-01 4 128703688 128703688 C A HSPA4L 5'UTR 0.21 TCGA-44-8117-01 4 138442182 138442182 C A PCDH18 3'UTR 0.24 TCGA-44-8117-01 4 155491813 155491813 G T FGB 3'UTR 0.18 TCGA-44-8117-01 4 162841556 162841556 C A FSTL5 Nonsense_Mutation p.G137* 0.20 TCGA-44-8117-01 4 164247596 164247596 C A NPY1R Missense_Mutation p.L37F 0.57 tolerated(0.82) benign(0.003) TCGA-44-8117-01 4 164506963 164506963 G C MARCH1 Missense_Mutation p.R121G 0.18 deleterious(0) probably_damaging(0.985) TCGA-44-8117-01 4 189060860 189060860 C G TRIML1 Missense_Mutation p.P50A 0.18 tolerated(0.28) benign(0.032) TCGA-44-8117-01 4 38972700 38972700 G T TMEM156 Missense_Mutation p.P294Q 0.67 deleterious(0) probably_damaging(0.974) TCGA-44-8117-01 4 44176789 44176789 G C KCTD8 3'UTR 0.64 TCGA-44-8117-01 4 49034730 49034730 C G CWH43 Missense_Mutation p.H552Q 0.23 tolerated(0.11) benign(0.157) TCGA-44-8117-01 4 52752797 52752797 C T DCUN1D4 Missense_Mutation p.P136L 0.68 tolerated(0.11) probably_damaging(0.994) TCGA-44-8117-01 4 55133749 55133749 T A PDGFRA Missense_Mutation p.F321Y 0.22 tolerated(0.2) probably_damaging(0.975) TCGA-44-8117-01 4 57182012 57182012 C - KIAA1211 Frame_Shift_Del p.A783Qfs*46 0.38 TCGA-44-8117-01 4 57182026 57182026 C A KIAA1211 Silent p.T786T 0.19 TCGA-44-8117-01 4 6042410 6042410 C A JAKMIP1 Nonsense_Mutation p.E711* 0.59 TCGA-44-8117-01 4 66197713 66197713 C A EPHA5 Missense_Mutation p.A996S 0.13 tolerated(0.95) benign(0.021) TCGA-44-8117-01 4 66213908 66213908 G A EPHA5 Missense_Mutation p.P841L 0.17 deleterious(0.05) probably_damaging(0.998) TCGA-44-8117-01 4 69111330 69111330 G A TMPRSS11B 5'UTR 0.10 TCGA-44-8117-01 4 70513265 70513265 C A UGT2A1 Missense_Mutation p.W33L 0.20 deleterious(0) probably_damaging(0.995) TCGA-44-8117-01 4 71227849 71227849 G A SMR3A Nonsense_Mutation p.W6* 0.30 TCGA-44-8117-01 4 74357672 74357672 G T AFM Missense_Mutation p.E309D 0.55 tolerated(0.06) probably_damaging(0.931) TCGA-44-8117-01 4 74361146 74361146 C T AFM Silent p.Y396Y 0.38 TCGA-44-8117-01 4 77977478 77977478 T A CCNI Splice_Site p.X82_splice 0.20 TCGA-44-8117-01 4 83276523 83276523 C A HNRNPD Missense_Mutation p.R344S 0.16 deleterious(0.03) probably_damaging(0.942) TCGA-44-8117-01 4 88532083 88532083 G - DSPP Frame_Shift_Del p.C8Sfs*5 0.31 TCGA-44-8117-01 4 89352391 89352391 G T HERC6 Missense_Mutation p.M728I 0.19 deleterious(0.02) possibly_damaging(0.645) TCGA-44-8117-01 4 91549195 91549195 A T CCSER1 Missense_Mutation p.T582S 0.20 tolerated(1) benign(0.107) TCGA-44-8117-01 4 94006216 94006216 C A GRID2 Silent p.L105L 0.48 TCGA-44-8117-01 4 94006217 94006217 C G GRID2 Missense_Mutation p.Q106E 0.48 deleterious(0) probably_damaging(0.999) TCGA-44-8117-01 4 95444880 95444880 A T PDLIM5 Missense_Mutation p.K34N 0.20 tolerated(0.26) benign(0.089) TCGA-44-8117-01 4 9784498 9784498 C G DRD5 Missense_Mutation p.T282S 0.15 tolerated(1) benign(0.004) TCGA-44-8117-01 5 127681116 127681116 C A FBN2 Silent p.T1050T 0.27 TCGA-44-8117-01 5 128863522 128863522 C A ADAMTS19 Missense_Mutation p.P384T 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-44-8117-01 5 128990005 128990005 C A ADAMTS19 Missense_Mutation p.P722Q 0.36 deleterious(0) probably_damaging(1) TCGA-44-8117-01 5 1294514 1294514 C T TERT Missense_Mutation p.A163T 0.18 deleterious(0) benign(0.434) TCGA-44-8117-01 5 13866355 13866355 C A DNAH5 Missense_Mutation p.A1364S 0.54 benign(0.364) TCGA-44-8117-01 5 140183086 140183086 C A PCDHA3 Missense_Mutation p.D768E 0.24 deleterious_low_confidence(0.03) probably_damaging(0.984) TCGA-44-8117-01 5 140187312 140187312 G T PCDHA4 Silent p.L180L 0.26 TCGA-44-8117-01 5 140222983 140222983 C T PCDHA8 Silent p.L693L 0.30 TCGA-44-8117-01 5 140235923 140235923 G T PCDHA10 Missense_Mutation p.R97L 0.30 deleterious_low_confidence(0.04) possibly_damaging(0.805) TCGA-44-8117-01 5 140241208 140241208 G T AC005609.1 3'UTR 0.29 TCGA-44-8117-01 5 140482345 140482345 G T PCDHB3 Silent p.S704S 0.29 TCGA-44-8117-01 5 140503016 140503016 C T PCDHB4 Missense_Mutation p.S479L 0.20 deleterious(0.01) possibly_damaging(0.813) TCGA-44-8117-01 5 140530555 140530555 C A PCDHB6 Silent p.P239P 0.38 TCGA-44-8117-01 5 140554009 140554009 G A PCDHB7 Silent p.V531V 0.33 TCGA-44-8117-01 5 140573619 140573619 G T PCDHB10 Silent p.L498L 0.33 TCGA-44-8117-01 5 140719571 140719571 C A PCDHGA2 Missense_Mutation p.P345T 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-8117-01 5 140725583 140725583 C A PCDHGA3 Silent p.T661T 0.31 TCGA-44-8117-01 5 140730561 140730561 G T PCDHGB1 Missense_Mutation p.R245M 0.27 deleterious(0.04) probably_damaging(0.964) TCGA-44-8117-01 5 140774406 140774406 G T PCDHGA8 Missense_Mutation p.G676C 0.24 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-44-8117-01 5 145969691 145969691 G T PPP2R2B Missense_Mutation p.P387H 0.36 deleterious(0) possibly_damaging(0.808) TCGA-44-8117-01 5 148442605 148442605 G T SH3TC2 5'UTR 0.39 TCGA-44-8117-01 5 150948240 150948240 C A FAT2 Nonsense_Mutation p.E85* 0.23 TCGA-44-8117-01 5 151771965 151771965 G T NMUR2 Missense_Mutation p.F345L 0.31 tolerated(0.65) benign(0.001) TCGA-44-8117-01 5 154300914 154300914 G A GEMIN5 Missense_Mutation p.P484L 0.25 deleterious(0) possibly_damaging(0.493) TCGA-44-8117-01 5 156479450 156479450 T C HAVCR1 Missense_Mutation p.T199A 0.30 tolerated(0.7) unknown(0) TCGA-44-8117-01 5 161580172 161580172 A C GABRG2 Missense_Mutation p.D449A 0.27 tolerated(0.27) possibly_damaging(0.796) TCGA-44-8117-01 5 167671450 167671450 T C TENM2 Missense_Mutation p.I1849T 0.25 deleterious(0) possibly_damaging(0.496) TCGA-44-8117-01 5 167929031 167929031 G T RARS Missense_Mutation p.L326F 0.28 deleterious(0.01) possibly_damaging(0.521) TCGA-44-8117-01 5 167929032 167929032 G T RARS Missense_Mutation p.D327Y 0.28 deleterious(0) possibly_damaging(0.869) TCGA-44-8117-01 5 169535415 169535415 G T FOXI1 Missense_Mutation p.G313W 0.26 deleterious(0.01) probably_damaging(0.989) TCGA-44-8117-01 5 171773210 171773210 T C SH3PXD2B Missense_Mutation p.Y373C 0.36 deleterious(0) probably_damaging(0.984) TCGA-44-8117-01 5 175793485 175793485 G T ARL10 Missense_Mutation p.V96L 0.44 tolerated(0.61) benign(0.013) TCGA-44-8117-01 5 176813016 176813016 C A SLC34A1 Silent p.A46A 0.25 TCGA-44-8117-01 5 178634682 178634682 G A ADAMTS2 Silent p.R241R 0.37 TCGA-44-8117-01 5 23526365 23526365 T C PRDM9 Missense_Mutation p.C390R 0.32 deleterious(0) benign(0.429) TCGA-44-8117-01 5 24488158 24488158 C A CDH10 Missense_Mutation p.G661C 0.57 deleterious(0) probably_damaging(0.999) TCGA-44-8117-01 5 32098552 32098552 C - PDZD2 Frame_Shift_Del p.S2678Hfs*5 0.28 TCGA-44-8117-01 5 33577084 33577084 G T ADAMTS12 Missense_Mutation p.P1016Q 0.16 tolerated(0.65) benign(0.002) TCGA-44-8117-01 5 33937926 33937926 C A RXFP3 Missense_Mutation p.Q361K 0.31 tolerated(1) benign(0.012) TCGA-44-8117-01 5 35876378 35876378 C A IL7R Nonsense_Mutation p.C390* 0.20 TCGA-44-8117-01 5 39203013 39203013 T C FYB Missense_Mutation p.N27S 0.11 tolerated(0.33) benign(0.007) TCGA-44-8117-01 5 5463147 5463147 G T KIAA0947 Nonsense_Mutation p.E1234* 0.07 TCGA-44-8117-01 5 64769486 64769486 C A ADAMTS6 Missense_Mutation p.W5C 0.31 tolerated(0.11) possibly_damaging(0.599) TCGA-44-8117-01 5 70782357 70782357 G T BDP1 Missense_Mutation p.Q372H 0.33 deleterious(0) probably_damaging(0.999) TCGA-44-8117-01 5 70805561 70805561 C T BDP1 Missense_Mutation p.A881V 0.53 tolerated(0.1) benign(0.245) TCGA-44-8117-01 5 7831947 7831947 G - C5orf49 3'UTR 0.08 TCGA-44-8117-01 5 79797618 79797618 G T FAM151B Missense_Mutation p.W11C 0.43 tolerated(0.06) benign(0.142) TCGA-44-8117-01 5 80419553 80419553 A C RASGRF2 Missense_Mutation p.T855P 0.18 deleterious_low_confidence(0) possibly_damaging(0.757) TCGA-44-8117-01 5 82779396 82779396 C A VCAN Missense_Mutation p.A20E 0.34 deleterious(0) probably_damaging(0.917) TCGA-44-8117-01 5 82937481 82937481 C G HAPLN1 Missense_Mutation p.G300A 0.44 deleterious(0.05) possibly_damaging(0.902) TCGA-44-8117-01 5 93294615 93294615 G C FAM172A Missense_Mutation p.T145R 0.29 deleterious(0.02) possibly_damaging(0.649) TCGA-44-8117-01 6 102074281 102074281 G A GRIK2 Missense_Mutation p.A104T 0.32 deleterious(0.05) benign(0.265) TCGA-44-8117-01 6 102074282 102074282 C G GRIK2 Missense_Mutation p.A104G 0.32 deleterious(0.05) benign(0.418) TCGA-44-8117-01 6 105243556 105243556 C A HACE1 Missense_Mutation p.R274L 0.57 tolerated(0.25) benign(0.009) TCGA-44-8117-01 6 10728909 10728909 G C TMEM14C Missense_Mutation p.R79T 0.19 deleterious(0) probably_damaging(1) TCGA-44-8117-01 6 114379301 114379301 G C HS3ST5 Missense_Mutation p.A54G 0.56 tolerated(0.39) benign(0.002) TCGA-44-8117-01 6 130399766 130399766 T C L3MBTL3 Silent p.L436L 0.23 TCGA-44-8117-01 6 131277303 131277303 T C EPB41L2 Missense_Mutation p.E108G 0.32 tolerated(0.07) benign(0) TCGA-44-8117-01 6 146720418 146720418 C A GRM1 Missense_Mutation p.T748N 0.64 deleterious(0) probably_damaging(0.995) TCGA-44-8117-01 6 154567771 154567771 C A IPCEF1 Missense_Mutation p.W67L 0.60 deleterious(0) probably_damaging(0.999) TCGA-44-8117-01 6 161781149 161781149 G A PARK2 Missense_Mutation p.P419L 0.64 deleterious(0.02) probably_damaging(1) TCGA-44-8117-01 6 163735987 163735987 G T PACRG Missense_Mutation p.V287F 0.56 deleterious(0) probably_damaging(0.97) TCGA-44-8117-01 6 165809914 165809914 T A PDE10A Missense_Mutation p.Y438F 0.21 deleterious(0.04) benign(0.105) TCGA-44-8117-01 6 168276031 168276031 G T MLLT4 Missense_Mutation p.A199S 0.62 tolerated(0.06) possibly_damaging(0.873) TCGA-44-8117-01 6 17764467 17764467 T C KIF13A Silent p.L1764L 0.41 TCGA-44-8117-01 6 24145986 24145986 C A NRSN1 Missense_Mutation p.L134M 0.65 deleterious(0.01) probably_damaging(0.994) TCGA-44-8117-01 6 24576703 24576703 G C KIAA0319 Missense_Mutation p.Q543E 0.19 deleterious(0.01) probably_damaging(0.92) TCGA-44-8117-01 6 25726451 25726451 G A HIST1H2AA Missense_Mutation p.T102I 0.43 deleterious_low_confidence(0.01) probably_damaging(0.971) TCGA-44-8117-01 6 2689086 2689086 C G MYLK4 Missense_Mutation p.G114R 0.15 tolerated(0.21) benign(0.103) TCGA-44-8117-01 6 28829674 28829674 C A XXbac-BPG308K3.6 RNA 0.31 TCGA-44-8117-01 6 29275388 29275388 C A OR14J1 Missense_Mutation p.L308I 0.56 tolerated(0.14) benign(0.003) TCGA-44-8117-01 6 29523856 29523856 T A UBD Missense_Mutation p.K100M 0.25 deleterious(0) benign(0.344) TCGA-44-8117-01 6 29691472 29691472 G A HLA-F Silent p.S34S 0.33 TCGA-44-8117-01 6 30128385 30128385 C T TRIM10 Missense_Mutation p.R84H 0.28 tolerated(0.09) benign(0.022) TCGA-44-8117-01 6 30128393 30128393 G T TRIM10 Missense_Mutation p.N81K 0.22 tolerated(0.77) benign(0.107) TCGA-44-8117-01 6 30858843 30858843 G T DDR1 Missense_Mutation p.D171Y 0.26 deleterious(0) probably_damaging(0.989) TCGA-44-8117-01 6 350766 350766 G A DUSP22 Intron 0.31 TCGA-44-8117-01 6 41126749 41126749 C G TREM2 Missense_Mutation p.A180P 0.18 deleterious(0) probably_damaging(0.919) TCGA-44-8117-01 6 41738534 41738534 C A FRS3 Missense_Mutation p.Q434H 0.31 tolerated(0.25) benign(0.006) TCGA-44-8117-01 6 41738694 41738694 C T FRS3 Missense_Mutation p.R381H 0.20 tolerated(0.13) possibly_damaging(0.871) TCGA-44-8117-01 6 47649299 47649299 C A GPR111 Missense_Mutation p.S335Y 0.30 deleterious(0.02) benign(0.312) TCGA-44-8117-01 6 49696491 49696491 G T CRISP3 Silent p.V253V 0.22 TCGA-44-8117-01 6 56044915 56044915 G A COL21A1 Missense_Mutation p.A34V 0.27 tolerated(0.12) probably_damaging(0.925) TCGA-44-8117-01 6 74104627 74104627 C A DDX43 5'UTR 0.38 TCGA-44-8117-01 6 7565606 7565606 G T DSP Missense_Mutation p.E264D 0.35 benign(0.024) TCGA-44-8117-01 6 90503886 90503886 C T MDN1 Missense_Mutation p.E199K 0.31 possibly_damaging(0.468) TCGA-44-8117-01 7 100683157 100683157 G T MUC17 Silent p.T2820T 0.19 TCGA-44-8117-01 7 103050880 103050880 C A SLC26A5 Silent p.L229L 0.44 TCGA-44-8117-01 7 103138672 103138672 C A RELN Nonsense_Mutation p.E2899* 0.19 TCGA-44-8117-01 7 106300653 106300653 G A CCDC71L Silent p.F230F 0.50 TCGA-44-8117-01 7 110762955 110762955 C A LRRN3 Missense_Mutation p.P43T 0.18 deleterious(0) probably_damaging(1) TCGA-44-8117-01 7 11142213 11142213 G T PHF14 3'UTR 0.33 TCGA-44-8117-01 7 117874487 117874487 C G ANKRD7 Missense_Mutation p.T61R 0.24 deleterious(0) probably_damaging(1) TCGA-44-8117-01 7 121719703 121719703 C A AASS Missense_Mutation p.A782S 0.35 tolerated(0.77) benign(0.392) TCGA-44-8117-01 7 1273195 1273195 G C UNCX Missense_Mutation p.R105P 0.23 deleterious(0.01) possibly_damaging(0.866) TCGA-44-8117-01 7 127669219 127669219 G T LRRC4 Missense_Mutation p.T492K 0.16 deleterious(0.03) benign(0.05) TCGA-44-8117-01 7 127670148 127670148 C A LRRC4 Missense_Mutation p.K182N 0.18 tolerated(0.14) benign(0.076) TCGA-44-8117-01 7 130025741 130025741 A G CPA1 Missense_Mutation p.Y350C 0.24 deleterious(0.01) possibly_damaging(0.777) TCGA-44-8117-01 7 131831277 131831277 C - PLXNA4 Frame_Shift_Del p.A1683Pfs*63 0.27 TCGA-44-8117-01 7 131925860 131925860 G T PLXNA4 Silent p.G523G 0.14 TCGA-44-8117-01 7 133932382 133932382 A T LRGUK Silent p.T686T 0.18 TCGA-44-8117-01 7 134215412 134215412 G T AKR1B10 Silent p.V28V 0.24 TCGA-44-8117-01 7 134260657 134260657 C A AKR1B15 Missense_Mutation p.L241M 0.13 deleterious(0) probably_damaging(1) TCGA-44-8117-01 7 136938270 136938270 T A PTN Missense_Mutation p.K77M 0.45 deleterious(0.02) probably_damaging(0.937) TCGA-44-8117-01 7 136938289 136938289 G C PTN Missense_Mutation p.R71G 0.46 deleterious_low_confidence(0.05) probably_damaging(0.93) TCGA-44-8117-01 7 137330268 137330268 G A DGKI Missense_Mutation p.H252Y 0.18 deleterious(0) probably_damaging(0.998) TCGA-44-8117-01 7 138447660 138447660 G T ATP6V0A4 Silent p.T134T 0.39 TCGA-44-8117-01 7 138968235 138968235 A G UBN2 Missense_Mutation p.I862V 0.41 deleterious_low_confidence(0.02) probably_damaging(0.919) TCGA-44-8117-01 7 140301255 140301255 A T DENND2A Missense_Mutation p.S315T 0.21 tolerated(0.39) benign(0.003) TCGA-44-8117-01 7 140373976 140373976 C A ADCK2 Missense_Mutation p.D282E 0.21 tolerated(0.42) benign(0.004) TCGA-44-8117-01 7 141464705 141464712 TTTCTTAA - TAS2R3 Frame_Shift_Del p.F250Cfs*5 0.38 TCGA-44-8117-01 7 141759660 141759660 C G MGAM Missense_Mutation p.P1318R 0.24 deleterious(0) probably_damaging(1) TCGA-44-8117-01 7 142104336 142104336 G T TRBV6-9 Silent p.A43A 0.19 TCGA-44-8117-01 7 142111551 142111551 G T TRBV5-7 Missense_Mutation p.P62H 0.44 deleterious(0.01) probably_damaging(0.98) TCGA-44-8117-01 7 142139786 142139786 G C TRBV7-6 5'UTR 0.37 TCGA-44-8117-01 7 142162094 142162094 C A TRBV6-6 Missense_Mutation p.G61W 0.15 deleterious(0) probably_damaging(0.999) TCGA-44-8117-01 7 142176428 142176428 C A TRBV7-4 Missense_Mutation p.R83L 0.38 deleterious(0) probably_damaging(0.964) TCGA-44-8117-01 7 142197981 142197981 C T TRBV11-2 RNA 0.41 TCGA-44-8117-01 7 142223881 142223881 G T TRBV11-1 Missense_Mutation p.L96I 0.23 deleterious(0) probably_damaging(0.996) TCGA-44-8117-01 7 142224260 142224260 G A TRBV11-1 Missense_Mutation p.T3I 0.35 tolerated(0.11) benign(0.212) TCGA-44-8117-01 7 142609700 142609700 C A TRPV5 Missense_Mutation p.G579V 0.37 deleterious(0) probably_damaging(0.996) TCGA-44-8117-01 7 142920057 142920057 C A TAS2R40 Missense_Mutation p.L296M 0.36 deleterious(0.02) probably_damaging(0.984) TCGA-44-8117-01 7 143039113 143039113 C A CLCN1 Silent p.P558P 0.18 TCGA-44-8117-01 7 144098666 144098666 A T NOBOX Missense_Mutation p.L106Q 0.21 tolerated(0.12) possibly_damaging(0.694) TCGA-44-8117-01 7 149489424 149489424 G T SSPO RNA 0.50 TCGA-44-8117-01 7 150069688 150069688 A T REPIN1 Missense_Mutation p.H510L 0.17 deleterious(0) probably_damaging(0.998) TCGA-44-8117-01 7 150217984 150217984 T C GIMAP7 3'UTR 0.19 TCGA-44-8117-01 7 150931243 150931243 G T CHPF2 Missense_Mutation p.R49L 0.29 tolerated(0.3) benign(0) TCGA-44-8117-01 7 15430512 15430512 A T AGMO Missense_Mutation p.I232K 0.17 deleterious(0) probably_damaging(0.996) TCGA-44-8117-01 7 15430514 15430514 G T AGMO Nonsense_Mutation p.C231* 0.18 TCGA-44-8117-01 7 15470712 15470712 C A AGMO Missense_Mutation p.G144V 0.18 tolerated(0.06) benign(0.091) TCGA-44-8117-01 7 154876089 154876089 C T HTR5A Silent p.I322I 0.16 TCGA-44-8117-01 7 1590557 1590557 A C TMEM184A Missense_Mutation p.L94R 0.16 deleterious(0) probably_damaging(0.983) TCGA-44-8117-01 7 19184425 19184425 C A FERD3L 3'UTR 0.34 TCGA-44-8117-01 7 20441523 20441523 A G ITGB8 Silent p.L487L 0.40 TCGA-44-8117-01 7 20762764 20762764 C T ABCB5 Silent p.A849A 0.14 TCGA-44-8117-01 7 20795083 20795083 G T ABCB5 Nonsense_Mutation p.G1204* 0.26 TCGA-44-8117-01 7 2302898 2302898 T A SNX8 Missense_Mutation p.E294D 0.39 tolerated(0.08) benign(0.049) TCGA-44-8117-01 7 23213769 23213769 G T KLHL7 Missense_Mutation p.G538V 0.27 deleterious(0) probably_damaging(0.955) TCGA-44-8117-01 7 23224757 23224757 T C NUPL2 Missense_Mutation p.S64P 0.24 deleterious(0.02) benign(0.057) TCGA-44-8117-01 7 24758726 24758726 C T DFNA5 Silent p.E172E 0.25 TCGA-44-8117-01 7 24784260 24784260 C T DFNA5 Missense_Mutation p.V109I 0.23 tolerated(0.06) possibly_damaging(0.582) TCGA-44-8117-01 7 26766626 26766626 C A SKAP2 Splice_Site p.X157_splice 0.19 TCGA-44-8117-01 7 27140295 27140295 C A HOXA2 3'UTR 0.24 TCGA-44-8117-01 7 27147498 27147498 G A HOXA3 3'UTR 0.40 TCGA-44-8117-01 7 27147939 27147939 G T HOXA3 Silent p.P309P 0.20 TCGA-44-8117-01 7 27148082 27148082 G C HOXA3 Missense_Mutation p.Q262E 0.38 tolerated(0.5) benign(0.076) TCGA-44-8117-01 7 30890076 30890076 G A FAM188B Silent p.L484L 0.16 TCGA-44-8117-01 7 33384242 33384242 T G BBS9 Missense_Mutation p.V442G 0.16 deleterious(0) probably_damaging(0.998) TCGA-44-8117-01 7 36194548 36194548 C A EEPD1 Silent p.T205T 0.36 TCGA-44-8117-01 7 37172827 37172827 G T ELMO1 Missense_Mutation p.P367T 0.39 deleterious(0) probably_damaging(0.948) TCGA-44-8117-01 7 37903979 37903979 C G NME8 Missense_Mutation p.P162A 0.14 deleterious(0.02) probably_damaging(1) TCGA-44-8117-01 7 41729708 41729708 C A INHBA Missense_Mutation p.G274V 0.29 tolerated_low_confidence(0.06) benign(0.012) TCGA-44-8117-01 7 42007450 42007450 G T GLI3 Missense_Mutation p.N725K 0.15 deleterious(0) benign(0.184) TCGA-44-8117-01 7 43506153 43506153 C A HECW1 Missense_Mutation p.L967I 0.36 deleterious(0.03) possibly_damaging(0.848) TCGA-44-8117-01 7 48089507 48089507 C G C7orf57 Missense_Mutation p.L180V 0.16 deleterious(0.04) benign(0.108) TCGA-44-8117-01 7 48089565 48089566 - C C7orf57 Frame_Shift_Ins p.V202Rfs*17 0.33 TCGA-44-8117-01 7 48313048 48313048 C A ABCA13 Missense_Mutation p.A1262D 0.41 benign(0.013) TCGA-44-8117-01 7 4839000 4839000 G A RADIL 3'UTR 0.29 TCGA-44-8117-01 7 53104070 53104070 C G POM121L12 Missense_Mutation p.L236V 0.14 deleterious(0) possibly_damaging(0.801) TCGA-44-8117-01 7 54617660 54617660 C A VSTM2A Missense_Mutation p.A144D 0.36 deleterious(0) probably_damaging(0.979) TCGA-44-8117-01 7 56006807 56006807 G T ZNF713 Missense_Mutation p.W134L 0.44 deleterious(0.02) probably_damaging(0.994) TCGA-44-8117-01 7 57528437 57528437 T A ZNF716 Nonsense_Mutation p.C90* 0.20 TCGA-44-8117-01 7 66703391 66703391 A T TYW1 Missense_Mutation p.S692C 0.16 tolerated(0.05) benign(0.013) TCGA-44-8117-01 7 73012007 73012007 C T MLXIPL Missense_Mutation p.A370T 0.23 tolerated(0.34) benign(0.001) TCGA-44-8117-01 7 73973201 73973201 G C GTF2IRD1 Missense_Mutation p.L738F 0.15 deleterious(0) probably_damaging(0.999) TCGA-44-8117-01 7 75052328 75052328 G C POM121C Missense_Mutation p.P403A 0.34 tolerated(0.38) benign(0.001) TCGA-44-8117-01 7 82387796 82387796 C A PCLO 3'UTR 0.52 TCGA-44-8117-01 7 87145836 87145836 C A ABCB1 Missense_Mutation p.G1025C 0.35 deleterious(0) probably_damaging(0.997) TCGA-44-8117-01 7 88423754 88423754 T A C7orf62 Missense_Mutation p.K168M 0.38 deleterious(0.02) benign(0.428) TCGA-44-8117-01 7 88963839 88963839 C A ZNF804B Missense_Mutation p.Q515K 0.48 tolerated(0.07) benign(0.342) TCGA-44-8117-01 7 89900941 89900941 G T C7orf63 Missense_Mutation p.V212F 0.15 tolerated(0.07) benign(0.22) TCGA-44-8117-01 7 93540090 93540090 C A GNGT1 Intron 0.35 TCGA-44-8117-01 7 99319961 99319961 G C CYP3A7 Missense_Mutation p.T59R 0.17 tolerated(0.35) benign(0.009) TCGA-44-8117-01 7 99696339 99696339 C A MCM7 Splice_Site p.X195_splice 0.37 TCGA-44-8117-01 8 103666041 103666041 A G KLF10 Intron 0.17 TCGA-44-8117-01 8 10470408 10470408 C A RP1L1 Missense_Mutation p.Q400H 0.47 probably_damaging(0.974) TCGA-44-8117-01 8 10470478 10470478 G C RP1L1 Nonsense_Mutation p.S377* 0.40 TCGA-44-8117-01 8 10555212 10555212 C - C8orf74 Frame_Shift_Del p.H116Tfs*22 0.31 TCGA-44-8117-01 8 110448623 110448623 G T PKHD1L1 Missense_Mutation p.V1188F 0.20 tolerated(0.06) benign(0.376) TCGA-44-8117-01 8 113243861 113243861 C T CSMD3 Missense_Mutation p.V3581I 0.14 deleterious(0) benign(0.247) TCGA-44-8117-01 8 113243862 113243862 C G CSMD3 Splice_Site p.X3581_splice 0.13 TCGA-44-8117-01 8 113243863 113243863 T A CSMD3 Splice_Site p.X3581_splice 0.13 TCGA-44-8117-01 8 113267635 113267635 C A CSMD3 Missense_Mutation p.G3295V 0.22 deleterious(0.02) possibly_damaging(0.643) TCGA-44-8117-01 8 113304806 113304806 C T CSMD3 Silent p.Q2916Q 0.45 TCGA-44-8117-01 8 113402990 113402991 CG A CSMD3 Frame_Shift_Del p.R1946Sfs*18 0.22 TCGA-44-8117-01 8 118830706 118830706 C A EXT1 Missense_Mutation p.V534L 0.23 tolerated(0.06) benign(0.189) TCGA-44-8117-01 8 120831711 120831711 T C TAF2 Silent p.A58A 0.45 TCGA-44-8117-01 8 121228657 121228657 G T COL14A1 Missense_Mutation p.W555C 0.41 deleterious(0) probably_damaging(1) TCGA-44-8117-01 8 130765064 130765065 AC - GSDMC Frame_Shift_Del p.Y242Rfs*14 0.11 TCGA-44-8117-01 8 133053777 133053777 A T OC90 Silent p.S113S 0.46 TCGA-44-8117-01 8 133925380 133925380 G T TG Silent p.T1416T 0.18 TCGA-44-8117-01 8 134107322 134107322 G T TG Missense_Mutation p.S2425I 0.20 deleterious(0) possibly_damaging(0.866) TCGA-44-8117-01 8 143867040 143867040 G T LY6D Missense_Mutation p.P39Q 0.38 deleterious(0) probably_damaging(0.991) TCGA-44-8117-01 8 144993575 144993575 C A PLEC Missense_Mutation p.G3609C 0.26 probably_damaging(1) TCGA-44-8117-01 8 22863646 22863646 G T RHOBTB2 Missense_Mutation p.R179L 0.50 deleterious(0.03) probably_damaging(0.969) TCGA-44-8117-01 8 39624511 39624511 G A ADAM2 Missense_Mutation p.P455S 0.50 tolerated(0.18) benign(0.285) TCGA-44-8117-01 8 4277543 4277543 G T CSMD1 Missense_Mutation p.S116Y 0.54 probably_damaging(0.99) TCGA-44-8117-01 8 49986667 49986667 C A C8orf22 Missense_Mutation p.N35K 0.46 tolerated(0.14) benign(0.23) TCGA-44-8117-01 8 53038662 53038662 T - ST18 Frame_Shift_Del p.K902Rfs*9 0.34 TCGA-44-8117-01 8 57025798 57025798 C T MOS Silent p.P248P 0.26 TCGA-44-8117-01 8 72211875 72211875 G A EYA1 Nonsense_Mutation p.Q213* 0.21 TCGA-44-8117-01 8 72756314 72756314 C T MSC Missense_Mutation p.V34I 0.33 tolerated_low_confidence(0.41) benign(0.004) TCGA-44-8117-01 8 74507481 74507481 C A STAU2 Missense_Mutation p.A361S 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-44-8117-01 8 81083778 81083778 C G TPD52 5'UTR 0.54 TCGA-44-8117-01 8 81599576 81599576 G A ZNF704 Missense_Mutation p.P148L 0.26 deleterious(0.02) probably_damaging(1) TCGA-44-8117-01 8 81599577 81599577 G A ZNF704 Missense_Mutation p.P148S 0.27 deleterious(0) probably_damaging(0.999) TCGA-44-8117-01 8 87591460 87591460 C TA CNGB3 Frame_Shift_Ins p.G601Vfs*35 0.18 TCGA-44-8117-01 8 88885169 88885169 C A DCAF4L2 Missense_Mutation p.R344L 0.22 tolerated(0.1) benign(0.157) TCGA-44-8117-01 8 91090664 91090664 A T CALB1 Silent p.P56P 0.23 TCGA-44-8117-01 8 92008043 92008044 - A TMEM55A Frame_Shift_Ins p.T213Hfs*53 0.10 TCGA-44-8117-01 8 95531518 95531519 AC - KIAA1429 Frame_Shift_Del p.C736Sfs*4 0.25 TCGA-44-8117-01 8 97157007 97157007 C G GDF6 Missense_Mutation p.E384D 0.39 tolerated(0.1) possibly_damaging(0.497) TCGA-44-8117-01 9 106876317 106876317 A G SMC2 Missense_Mutation p.Y496C 0.67 tolerated(0.15) benign(0) TCGA-44-8117-01 9 107579636 107579636 T C ABCA1 Missense_Mutation p.H1171R 0.35 tolerated(0.78) benign(0.01) TCGA-44-8117-01 9 119094729 119094729 G T PAPPA Missense_Mutation p.D1127Y 0.35 deleterious(0) benign(0.087) TCGA-44-8117-01 9 126125171 126125171 C A CRB2 Missense_Mutation p.A41D 0.66 tolerated(0.47) unknown(0) TCGA-44-8117-01 9 126125172 126125172 C T CRB2 Silent p.A41A 0.66 TCGA-44-8117-01 9 129458726 129458726 C G LMX1B Missense_Mutation p.S406C 0.26 deleterious(0) probably_damaging(1) TCGA-44-8117-01 9 134360132 134360132 C T PRRC2B Silent p.I1840I 0.03 TCGA-44-8117-01 9 136028900 136028900 C A GBGT1 3'UTR 0.68 TCGA-44-8117-01 9 136532021 136532021 C A SARDH Intron 0.81 TCGA-44-8117-01 9 15423971 15423971 C A SNAPC3 Missense_Mutation p.L127M 0.49 deleterious(0) probably_damaging(1) TCGA-44-8117-01 9 33385102 33385102 C A AQP7 Silent p.T310T 0.29 TCGA-44-8117-01 9 34506794 34506794 C T DNAI1 Silent p.Y411Y 0.28 TCGA-44-8117-01 9 35546516 35546516 A G RUSC2 5'UTR 0.29 TCGA-44-8117-01 9 79325372 79325372 C T PRUNE2 Silent p.K606K 0.39 TCGA-44-8117-01 9 84532527 84532527 A T SPATA31D5P RNA 0.35 TCGA-44-8117-01 9 90500604 90500604 C T SPATA31E1 Missense_Mutation p.T401M 0.68 tolerated(0.11) benign(0.241) TCGA-44-8117-01 9 95019071 95019071 T A IARS Silent p.I676I 0.36 TCGA-44-8117-01 9 99157136 99157136 G T ZNF367 Silent p.T220T 0.68 TCGA-44-8117-01 X 101909066 101909066 C A GPRASP1 Silent p.R75R 0.26 TCGA-44-8117-01 X 102968696 102968696 C T TMEM31 Missense_Mutation p.L93F 0.28 tolerated_low_confidence(1) probably_damaging(0.934) TCGA-44-8117-01 X 103434361 103434361 C G FAM199X Missense_Mutation p.R357G 0.34 deleterious(0.04) probably_damaging(0.979) TCGA-44-8117-01 X 106243340 106243340 G A MORC4 5'UTR 0.36 TCGA-44-8117-01 X 107433695 107433695 G A COL4A6 Silent p.N452N 0.25 TCGA-44-8117-01 X 109697338 109697338 G A RGAG1 Missense_Mutation p.E1165K 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-8117-01 X 111155630 111155630 C A TRPC5 Missense_Mutation p.R263S 0.24 tolerated(0.2) possibly_damaging(0.83) TCGA-44-8117-01 X 114141328 114141328 C A HTR2C Silent p.R243R 0.24 TCGA-44-8117-01 X 118222746 118222746 G T KIAA1210 Nonsense_Mutation p.S816* 0.25 TCGA-44-8117-01 X 118377132 118377132 G T PGRMC1 Missense_Mutation p.G168V 0.21 deleterious(0) probably_damaging(1) TCGA-44-8117-01 X 119249811 119249811 C A RHOXF1 5'UTR 0.62 TCGA-44-8117-01 X 119387931 119387931 C A ZBTB33 Missense_Mutation p.P221T 0.22 tolerated(0.05) benign(0.151) TCGA-44-8117-01 X 119427897 119427897 C A TMEM255A Nonsense_Mutation p.G71* 0.27 TCGA-44-8117-01 X 119438208 119438208 A T TMEM255A Missense_Mutation p.V66D 0.23 deleterious(0) probably_damaging(0.977) TCGA-44-8117-01 X 122387162 122387162 C A GRIA3 Missense_Mutation p.Q93K 0.18 deleterious(0.03) possibly_damaging(0.859) TCGA-44-8117-01 X 122616714 122616714 T C GRIA3 Missense_Mutation p.L835P 0.19 deleterious(0) probably_damaging(1) TCGA-44-8117-01 X 122616715 122616715 G T GRIA3 Silent p.L835L 0.19 TCGA-44-8117-01 X 123019993 123019993 T A XIAP Missense_Mutation p.Y161N 0.19 deleterious(0.03) benign(0.002) TCGA-44-8117-01 X 123200237 123200237 A G STAG2 Missense_Mutation p.Y739C 0.23 deleterious(0) probably_damaging(0.973) TCGA-44-8117-01 X 125298868 125298868 C A DCAF12L2 Missense_Mutation p.R347L 0.17 tolerated(0.06) benign(0.014) TCGA-44-8117-01 X 125299403 125299403 C A DCAF12L2 Nonsense_Mutation p.E169* 0.29 TCGA-44-8117-01 X 125685303 125685303 G T DCAF12L1 Missense_Mutation p.A430E 0.40 deleterious(0) probably_damaging(0.947) TCGA-44-8117-01 X 129054701 129054701 G A UTP14A Silent p.K309K 0.04 TCGA-44-8117-01 X 129200830 129200830 C A ELF4 Missense_Mutation p.G620C 0.26 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-44-8117-01 X 129799709 129799709 C T ENOX2 Missense_Mutation p.A337T 0.30 tolerated(0.06) benign(0.164) TCGA-44-8117-01 X 130217914 130217914 C - ARHGAP36 Frame_Shift_Del p.R177Gfs*50 0.36 TCGA-44-8117-01 X 130411034 130411034 G C IGSF1 Silent p.A834A 0.20 TCGA-44-8117-01 X 131540322 131540322 C A MBNL3 Missense_Mutation p.K92N 0.26 tolerated(0.12) possibly_damaging(0.627) TCGA-44-8117-01 X 133379214 133379214 A T CCDC160 Silent p.L128L 0.15 TCGA-44-8117-01 X 134156204 134156204 C A FAM127C Missense_Mutation p.G96C 0.17 deleterious(0) possibly_damaging(0.885) TCGA-44-8117-01 X 136112644 136112644 G T GPR101 Missense_Mutation p.A397D 0.15 deleterious(0) probably_damaging(1) TCGA-44-8117-01 X 138633377 138633377 G T F9 Missense_Mutation p.R226L 0.46 deleterious(0) benign(0.361) TCGA-44-8117-01 X 138643681 138643681 A T F9 Splice_Site p.X280_splice 0.51 TCGA-44-8117-01 X 138878615 138878615 G T ATP11C Missense_Mutation p.F344L 0.14 tolerated(0.28) probably_damaging(0.999) TCGA-44-8117-01 X 139866394 139866394 C A CDR1 Missense_Mutation p.M46I 0.48 tolerated(0.3) benign(0.043) TCGA-44-8117-01 X 140983095 140983095 G T MAGEC3 Missense_Mutation p.R317L 0.27 deleterious(0) benign(0.25) TCGA-44-8117-01 X 151869939 151869939 C T MAGEA6 Missense_Mutation p.A210V 0.18 deleterious(0.05) benign(0.061) TCGA-44-8117-01 X 152159231 152159231 G T PNMA5 Silent p.G304G 0.09 TCGA-44-8117-01 X 153184318 153184318 G A ARHGAP4 Missense_Mutation p.R374C 0.20 tolerated(0.06) benign(0.066) TCGA-44-8117-01 X 24732763 24732763 T A POLA1 Missense_Mutation p.C141S 0.60 tolerated(0.77) benign(0) TCGA-44-8117-01 X 26212410 26212410 G A MAGEB6 Silent p.Q149Q 0.16 TCGA-44-8117-01 X 27999418 27999418 G C DCAF8L1 Missense_Mutation p.P12A 0.18 tolerated_low_confidence(0.2) benign(0.146) TCGA-44-8117-01 X 299402 299402 T A PPP2R3B Missense_Mutation p.Y505F 0.44 tolerated(0.51) benign(0.014) TCGA-44-8117-01 X 30873637 30873637 C A TAB3 Nonsense_Mutation p.E49* 0.29 TCGA-44-8117-01 X 31200875 31200875 C A DMD Missense_Mutation p.E3318D 0.38 benign(0.388) TCGA-44-8117-01 X 32382813 32382813 G T DMD Missense_Mutation p.H1680Q 0.21 benign(0.402) TCGA-44-8117-01 X 34148618 34148618 T A FAM47A Missense_Mutation p.E593V 0.20 deleterious(0.02) probably_damaging(0.978) TCGA-44-8117-01 X 35989775 35989775 C T CXorf22 Silent p.L681L 0.39 TCGA-44-8117-01 X 41586984 41586984 G T GPR82 Silent p.T235T 0.48 TCGA-44-8117-01 X 47918087 47918087 C A ZNF630 Nonsense_Mutation p.G582* 0.09 TCGA-44-8117-01 X 49022529 49022529 C T MAGIX Missense_Mutation p.R266W 0.06 deleterious(0.03) benign(0.032) TCGA-44-8117-01 X 49030725 49030725 A G PLP2 Missense_Mutation p.Y130C 0.17 deleterious(0) probably_damaging(0.954) TCGA-44-8117-01 X 49143153 49143153 G T PPP1R3F Silent p.G667G 0.56 TCGA-44-8117-01 X 50351178 50351178 C A SHROOM4 Missense_Mutation p.M988I 0.35 tolerated(0.18) benign(0.003) TCGA-44-8117-01 X 51150588 51150588 C A CXorf67 Silent p.A240A 0.26 TCGA-44-8117-01 X 51488470 51488470 T A GSPT2 Missense_Mutation p.I583N 0.40 deleterious(0.01) probably_damaging(0.915) TCGA-44-8117-01 X 53277966 53277966 C A IQSEC2 Missense_Mutation p.S799I 0.37 deleterious(0) probably_damaging(1) TCGA-44-8117-01 X 54497752 54497752 G A FGD1 Missense_Mutation p.P159L 0.17 deleterious(0) possibly_damaging(0.908) TCGA-44-8117-01 X 54957723 54957723 A T TRO 3'UTR 0.17 TCGA-44-8117-01 X 55514652 55514652 T A USP51 Missense_Mutation p.T241S 0.13 tolerated(0.41) probably_damaging(0.973) TCGA-44-8117-01 X 56591011 56591011 C A UBQLN2 Silent p.L235L 0.10 TCGA-44-8117-01 X 63488883 63488883 G T MTMR8 Missense_Mutation p.T550N 0.28 deleterious(0.02) benign(0.055) TCGA-44-8117-01 X 64196278 64196278 C A ZC4H2 5'UTR 0.15 TCGA-44-8117-01 X 65417556 65417556 C A HEPH Silent p.P565P 0.14 TCGA-44-8117-01 X 68725732 68725732 A C FAM155B Missense_Mutation p.T203P 0.27 deleterious(0) probably_damaging(0.986) TCGA-44-8117-01 X 68725734 68725734 G T FAM155B Silent p.T203T 0.29 TCGA-44-8117-01 X 69262038 69262038 G C AWAT2 Missense_Mutation p.I282M 0.15 deleterious(0) probably_damaging(0.925) TCGA-44-8117-01 X 69424217 69424217 C A DGAT2L6 Missense_Mutation p.P237H 0.21 tolerated(0.38) probably_damaging(0.946) TCGA-44-8117-01 X 70316361 70316361 G T FOXO4 5'UTR 0.14 TCGA-44-8117-01 X 70330844 70330844 G T IL2RG Missense_Mutation p.P58T 0.54 deleterious(0) probably_damaging(0.978) TCGA-44-8117-01 X 71932665 71932665 C A PHKA1 Missense_Mutation p.A65S 0.25 deleterious(0.02) probably_damaging(0.968) TCGA-44-8117-01 X 7252074 7252074 A T STS Missense_Mutation p.Q435L 0.38 tolerated(0.13) benign(0.001) TCGA-44-8117-01 X 73068819 73068819 C A XIST RNA 0.17 TCGA-44-8117-01 X 83128909 83128909 A G CYLC1 Missense_Mutation p.K398R 0.24 deleterious(0.04) unknown(0) TCGA-44-8117-01 X 83320046 83320046 C A RPS6KA6 Missense_Mutation p.W682L 0.27 deleterious(0) probably_damaging(0.996) TCGA-44-8117-01 X 91132778 91132778 C G PCDH11X Missense_Mutation p.F513L 0.16 deleterious(0) probably_damaging(0.999) TCGA-44-8117-01 X 9863530 9863530 G T SHROOM2 Missense_Mutation p.D528Y 0.55 deleterious(0.01) benign(0.144) TCGA-44-8119-01 10 100148150 100148150 C A PYROXD2 Missense_Mutation p.A470S 0.37 tolerated(0.73) benign(0.002) TCGA-44-8119-01 10 100189559 100189559 A T HPS1 Missense_Mutation p.S286T 0.37 deleterious(0.03) benign(0.113) TCGA-44-8119-01 10 1054920 1054920 A T GTPBP4 Missense_Mutation p.E379V 0.19 deleterious(0.01) benign(0.183) TCGA-44-8119-01 10 111878996 111878996 C T ADD3 Missense_Mutation p.P249S 0.37 deleterious(0.02) probably_damaging(1) TCGA-44-8119-01 10 115973244 115973244 G C TDRD1 Missense_Mutation p.E657D 0.38 deleterious(0.01) benign(0.071) TCGA-44-8119-01 10 116075448 116075448 G T AFAP1L2 Nonsense_Mutation p.Y161* 0.35 TCGA-44-8119-01 10 120931969 120931969 G A PRDX3 Missense_Mutation p.A159V 0.22 tolerated(0.06) benign(0.006) TCGA-44-8119-01 10 13275562 13275562 G T UCMA Missense_Mutation p.P66T 0.48 tolerated(0.25) benign(0.297) TCGA-44-8119-01 10 133106633 133106633 C G TCERG1L Missense_Mutation p.A171P 0.29 deleterious(0) probably_damaging(0.992) TCGA-44-8119-01 10 15614261 15614261 C A ITGA8 Silent p.L862L 0.70 TCGA-44-8119-01 10 16996413 16996413 T C CUBN Silent p.R1610R 0.60 TCGA-44-8119-01 10 17156118 17156118 C A CUBN Missense_Mutation p.R264I 0.72 tolerated(0.38) benign(0.003) TCGA-44-8119-01 10 20465998 20465998 G T PLXDC2 Silent p.S318S 0.66 TCGA-44-8119-01 10 22678111 22678111 C G SPAG6 Missense_Mutation p.A292G 0.64 tolerated(0.07) benign(0.097) TCGA-44-8119-01 10 23248350 23248350 T A ARMC3 Missense_Mutation p.F128L 0.10 deleterious(0.03) probably_damaging(0.998) TCGA-44-8119-01 10 25888182 25888182 C A GPR158 Silent p.I1209I 0.71 TCGA-44-8119-01 10 43016445 43016445 C A ZNF37BP RNA 0.32 TCGA-44-8119-01 10 48429267 48429267 A T GDF10 Missense_Mutation p.S207T 0.29 tolerated(0.66) possibly_damaging(0.721) TCGA-44-8119-01 10 52913067 52913067 G A PRKG1 Missense_Mutation p.G152E 0.39 deleterious(0) probably_damaging(1) TCGA-44-8119-01 10 55698616 55698616 G T PCDH15 Missense_Mutation p.S1111Y 0.29 deleterious(0) probably_damaging(0.992) TCGA-44-8119-01 10 56367683 56367683 G T PCDH15 Intron 0.23 TCGA-44-8119-01 10 60556202 60556202 C A BICC1 Missense_Mutation p.P428T 0.30 deleterious(0.04) benign(0.031) TCGA-44-8119-01 10 70451505 70451505 C G TET1 Missense_Mutation p.D2115E 0.33 deleterious(0) possibly_damaging(0.773) TCGA-44-8119-01 10 70645520 70645520 T C STOX1 Silent p.C656C 0.36 TCGA-44-8119-01 10 70946196 70946196 C G SUPV3L1 Intron 0.33 TCGA-44-8119-01 10 72358332 72358332 G T PRF1 Missense_Mutation p.P382Q 0.36 deleterious(0.03) possibly_damaging(0.741) TCGA-44-8119-01 10 73537587 73537587 C A C10orf54 5'Flank 0.37 TCGA-44-8119-01 10 7682803 7682803 C A ITIH5 Missense_Mutation p.K105N 0.46 deleterious(0) benign(0.029) TCGA-44-8119-01 10 79590499 79590499 C A DLG5 Silent p.T627T 0.28 TCGA-44-8119-01 10 81272623 81272623 G A EIF5AL1 Missense_Mutation p.C73Y 0.37 deleterious(0) benign(0.239) TCGA-44-8119-01 10 87614258 87614258 G C GRID1 Missense_Mutation p.R410G 0.43 deleterious(0.01) benign(0.187) TCGA-44-8119-01 10 88220932 88220932 C G WAPAL Splice_Site p.X828_splice 0.34 TCGA-44-8119-01 10 90537955 90537955 C A LIPN Silent p.R385R 0.20 TCGA-44-8119-01 10 96281785 96281785 C A TBC1D12 Missense_Mutation p.A612D 0.25 deleterious(0) probably_damaging(1) TCGA-44-8119-01 11 110451845 110451845 G A ARHGAP20 Nonsense_Mutation p.Q609* 0.09 TCGA-44-8119-01 11 113102992 113102992 A T NCAM1 Silent p.S496S 0.34 TCGA-44-8119-01 11 113283328 113283328 A T DRD2 Missense_Mutation p.L363H 0.08 tolerated(0.49) possibly_damaging(0.728) TCGA-44-8119-01 11 114392968 114392968 C T NXPE1 Missense_Mutation p.G314S 0.24 tolerated(0.24) benign(0.007) TCGA-44-8119-01 11 1157767 1157767 C T MUC5AC Silent p.C278C 0.11 TCGA-44-8119-01 11 1161847 1161847 G A MUC5AC Silent p.V509V 0.16 TCGA-44-8119-01 11 118764811 118764811 C A CXCR5 Silent p.L186L 0.13 TCGA-44-8119-01 11 118765015 118765015 G A CXCR5 Silent p.R254R 0.06 TCGA-44-8119-01 11 118773617 118773617 C A BCL9L Missense_Mutation p.A279S 0.28 possibly_damaging(0.739) TCGA-44-8119-01 11 125359606 125359606 G C FEZ1 Missense_Mutation p.P23R 0.28 tolerated(0.48) benign(0) TCGA-44-8119-01 11 125542601 125542601 G C ACRV1 Missense_Mutation p.Q229E 0.08 tolerated(0.06) benign(0.365) TCGA-44-8119-01 11 125546297 125546297 G T ACRV1 Silent p.I210I 0.03 TCGA-44-8119-01 11 126137525 126137525 C T SRPR Missense_Mutation p.R95H 0.19 deleterious(0.01) benign(0.242) TCGA-44-8119-01 11 1264140 1264140 C T MUC5B Silent p.P2010P 0.09 TCGA-44-8119-01 11 1265053 1265053 G A MUC5B Missense_Mutation p.E2315K 0.21 unknown(0) TCGA-44-8119-01 11 132306048 132306048 T A OPCML Missense_Mutation p.D290V 0.17 deleterious(0) probably_damaging(1) TCGA-44-8119-01 11 133790610 133790610 C A IGSF9B Nonsense_Mutation p.E1004* 0.43 TCGA-44-8119-01 11 134037950 134037950 C T NCAPD3 Missense_Mutation p.D1172N 0.44 tolerated(0.13) benign(0.128) TCGA-44-8119-01 11 14284408 14284408 G T RP11-21L19.1 RNA 0.23 TCGA-44-8119-01 11 20652283 20652283 G T SLC6A5 Missense_Mutation p.A516S 0.42 deleterious(0) probably_damaging(0.964) TCGA-44-8119-01 11 2191098 2191098 G T TH Missense_Mutation p.P63T 0.23 deleterious_low_confidence(0.01) probably_damaging(0.933) TCGA-44-8119-01 11 22384297 22384297 G T SLC17A6 Missense_Mutation p.G225V 0.36 deleterious(0) probably_damaging(0.999) TCGA-44-8119-01 11 26720040 26720040 C A SLC5A12 Silent p.V288V 0.36 TCGA-44-8119-01 11 32956258 32956258 A T QSER1 Missense_Mutation p.S1023C 0.09 deleterious(0.03) possibly_damaging(0.471) TCGA-44-8119-01 11 33677589 33677589 T G KIAA1549L Missense_Mutation p.V1634G 0.08 tolerated(0.3) possibly_damaging(0.632) TCGA-44-8119-01 11 36596655 36596655 T C RAG1 Missense_Mutation p.S601P 0.42 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-44-8119-01 11 4142904 4142904 A C RRM1 Missense_Mutation p.K316T 0.06 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-44-8119-01 11 4869870 4869870 G T OR51S1 Missense_Mutation p.P190Q 0.38 tolerated(0.59) probably_damaging(1) TCGA-44-8119-01 11 4903223 4903223 C A OR51T1 Missense_Mutation p.P59T 0.46 deleterious(0) probably_damaging(0.999) TCGA-44-8119-01 11 49974001 49974001 G T OR4C13 Missense_Mutation p.E9D 0.25 deleterious_low_confidence(0) possibly_damaging(0.721) TCGA-44-8119-01 11 5255422 5255422 C A HBD Missense_Mutation p.W38C 0.17 deleterious(0) probably_damaging(1) TCGA-44-8119-01 11 55038116 55038117 TT A TRIM48 3'UTR 0.34 TCGA-44-8119-01 11 55681719 55681719 G C OR5W2 Missense_Mutation p.L114V 0.52 deleterious(0.03) benign(0.298) TCGA-44-8119-01 11 55798746 55798746 G T OR5AS1 Missense_Mutation p.M284I 0.22 deleterious(0.01) probably_damaging(0.985) TCGA-44-8119-01 11 558017 558017 C T C11orf35 Missense_Mutation p.R141Q 0.14 tolerated(1) benign(0.001) TCGA-44-8119-01 11 56019928 56019928 C A OR5T3 Missense_Mutation p.L85I 0.12 deleterious(0.02) possibly_damaging(0.84) TCGA-44-8119-01 11 56127789 56127789 C A OR8J1 Missense_Mutation p.L23I 0.27 deleterious(0.03) possibly_damaging(0.493) TCGA-44-8119-01 11 56431376 56431376 G T OR5AR1 Missense_Mutation p.G72V 0.21 tolerated(0.18) possibly_damaging(0.549) TCGA-44-8119-01 11 56511119 56511119 T A OR9G4 Missense_Mutation p.N57Y 0.51 deleterious(0) probably_damaging(0.999) TCGA-44-8119-01 11 5878670 5878670 A G OR52E8 Missense_Mutation p.L88S 0.31 deleterious(0) probably_damaging(0.963) TCGA-44-8119-01 11 58972195 58972195 C A DTX4 Missense_Mutation p.A558D 0.19 deleterious(0) benign(0.269) TCGA-44-8119-01 11 6007584 6007584 C A OR52L1 Missense_Mutation p.G193C 0.49 deleterious(0) possibly_damaging(0.868) TCGA-44-8119-01 11 6023323 6023324 - T OR56A4 Frame_Shift_Ins p.E353Gfs*29 0.29 TCGA-44-8119-01 11 6048541 6048541 C A OR56A1 Missense_Mutation p.A132S 0.57 deleterious(0.01) probably_damaging(0.985) TCGA-44-8119-01 11 6048542 6048542 C T OR56A1 Silent p.V131V 0.56 TCGA-44-8119-01 11 61094347 61094347 C A DDB1 Missense_Mutation p.V190L 0.49 tolerated(0.3) benign(0.125) TCGA-44-8119-01 11 62291345 62291345 G A AHNAK Missense_Mutation p.P3515L 0.13 probably_damaging(0.986) TCGA-44-8119-01 11 62415016 62415016 G A INTS5 Missense_Mutation p.R846C 0.53 tolerated(0.16) possibly_damaging(0.597) TCGA-44-8119-01 11 63488070 63488070 G T RTN3 Missense_Mutation p.G699V 0.26 deleterious(0) possibly_damaging(0.489) TCGA-44-8119-01 11 64121277 64121277 C A CCDC88B Silent p.P1308P 0.24 TCGA-44-8119-01 11 64138759 64138759 T C RPS6KA4 Missense_Mutation p.F709S 0.14 deleterious(0) possibly_damaging(0.566) TCGA-44-8119-01 11 65386109 65386109 G T PCNXL3 Nonsense_Mutation p.E426* 0.14 TCGA-44-8119-01 11 66206175 66206175 G A MRPL11 Silent p.G17G 0.58 TCGA-44-8119-01 11 6637559 6637559 C A TPP1 Silent p.L354L 0.22 TCGA-44-8119-01 11 6898822 6898822 T G OR10A4 Missense_Mutation p.L315R 0.56 deleterious(0) possibly_damaging(0.534) TCGA-44-8119-01 11 74915480 74915480 C T SLCO2B1 Missense_Mutation p.S662F 0.48 deleterious(0.01) benign(0.413) TCGA-44-8119-01 11 75111773 75111773 T A RPS3 Missense_Mutation p.N22K 0.46 tolerated(0.07) possibly_damaging(0.779) TCGA-44-8119-01 11 76750914 76750914 G A B3GNT6 Missense_Mutation p.A107T 0.60 deleterious(0.03) possibly_damaging(0.735) TCGA-44-8119-01 11 77635810 77635810 C A INTS4 Missense_Mutation p.R500S 0.14 deleterious(0) probably_damaging(0.997) TCGA-44-8119-01 11 77635811 77635811 C A INTS4 Missense_Mutation p.R500M 0.16 deleterious(0) probably_damaging(0.999) TCGA-44-8119-01 11 77937815 77937815 G T GAB2 Silent p.T301T 0.42 TCGA-44-8119-01 11 8060557 8060557 G T TUB Missense_Mutation p.R46L 0.26 deleterious_low_confidence(0) benign(0.005) TCGA-44-8119-01 11 8161580 8161580 C A RIC3 Silent p.L95L 0.33 TCGA-44-8119-01 11 82877572 82877572 A C PCF11 Missense_Mutation p.K545Q 0.23 tolerated(0.07) probably_damaging(0.972) TCGA-44-8119-01 11 86097134 86097134 C T CCDC81 Missense_Mutation p.R41W 0.11 deleterious(0.02) benign(0.006) TCGA-44-8119-01 11 86868383 86868383 G T TMEM135 Missense_Mutation p.A133S 0.22 deleterious(0.01) probably_damaging(0.95) TCGA-44-8119-01 11 92531515 92531515 G T FAT3 Missense_Mutation p.S1779I 0.55 probably_damaging(0.987) TCGA-44-8119-01 11 9990005 9990005 C A SBF2 Nonsense_Mutation p.E495* 0.42 TCGA-44-8119-01 12 100452054 100452054 C A UHRF1BP1L Missense_Mutation p.D1001Y 0.11 deleterious(0.01) benign(0.092) TCGA-44-8119-01 12 100732508 100732508 G A SCYL2 Missense_Mutation p.G783E 0.13 deleterious(0.01) possibly_damaging(0.717) TCGA-44-8119-01 12 10165482 10165482 T C CLEC12B Missense_Mutation p.F64L 0.55 tolerated(0.25) benign(0.01) TCGA-44-8119-01 12 104126904 104126904 G T STAB2 Missense_Mutation p.D1802Y 0.11 deleterious(0) possibly_damaging(0.887) TCGA-44-8119-01 12 104155186 104155186 G A STAB2 Missense_Mutation p.V2453M 0.10 tolerated(0.15) benign(0.009) TCGA-44-8119-01 12 109539761 109539761 G C UNG Missense_Mutation p.G164R 0.08 deleterious(0) probably_damaging(1) TCGA-44-8119-01 12 110224575 110224575 C A TRPV4 Missense_Mutation p.G759V 0.62 deleterious(0) probably_damaging(1) TCGA-44-8119-01 12 110778686 110778686 C T ATP2A2 Missense_Mutation p.P662S 0.19 tolerated(0.22) benign(0.004) TCGA-44-8119-01 12 11174633 11174633 T C TAS2R19 Missense_Mutation p.T180A 0.61 tolerated(0.13) benign(0.005) TCGA-44-8119-01 12 112147373 112147373 G C ACAD10 Missense_Mutation p.R192T 0.10 tolerated(0.07) probably_damaging(0.99) TCGA-44-8119-01 12 117710245 117710245 C A NOS1 Missense_Mutation p.G595V 0.66 deleterious(0.05) probably_damaging(0.999) TCGA-44-8119-01 12 120580453 120580453 G A GCN1L1 Missense_Mutation p.T1896I 0.12 benign(0.282) TCGA-44-8119-01 12 121951131 121951131 C A KDM2B Silent p.V374V 0.12 TCGA-44-8119-01 12 130845802 130845802 C A PIWIL1 Silent p.T581T 0.73 TCGA-44-8119-01 12 132334575 132334575 C T MMP17 Missense_Mutation p.T478M 0.14 tolerated(0.13) benign(0.018) TCGA-44-8119-01 12 132394479 132394479 C G ULK1 Silent p.T247T 0.21 TCGA-44-8119-01 12 133225975 133225975 G A POLE Missense_Mutation p.R1308W 0.07 deleterious(0.04) possibly_damaging(0.775) TCGA-44-8119-01 12 176452 176452 C A IQSEC3 Missense_Mutation p.P135H 0.50 tolerated_low_confidence(0.06) possibly_damaging(0.878) TCGA-44-8119-01 12 250441 250441 G C IQSEC3 Missense_Mutation p.D715H 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-44-8119-01 12 27475316 27475316 T C STK38L Silent p.Y441Y 0.16 TCGA-44-8119-01 12 29642559 29642559 G C OVCH1 Silent p.A232A 0.61 TCGA-44-8119-01 12 40740604 40740604 G T LRRK2 Missense_Mutation p.Q2053H 0.63 deleterious(0) probably_damaging(1) TCGA-44-8119-01 12 40740605 40740605 G T LRRK2 Missense_Mutation p.A2054S 0.63 deleterious(0.01) probably_damaging(0.999) TCGA-44-8119-01 12 42840416 42840416 A T PPHLN1 Missense_Mutation p.Q458L 0.05 deleterious_low_confidence(0) benign(0.069) TCGA-44-8119-01 12 48377888 48377888 T G COL2A1 Silent p.A641A 0.70 TCGA-44-8119-01 12 51773454 51773454 T A GALNT6 Missense_Mutation p.T38S 0.08 tolerated_low_confidence(0.91) benign(0.002) TCGA-44-8119-01 12 52309224 52309224 G T ACVRL1 Missense_Mutation p.D330Y 0.10 deleterious(0) probably_damaging(1) TCGA-44-8119-01 12 53185110 53185110 T A KRT3 Missense_Mutation p.Q472L 0.12 deleterious(0.03) probably_damaging(0.932) TCGA-44-8119-01 12 54405017 54405017 A T HOXC8 Missense_Mutation p.K194M 0.07 deleterious(0) probably_damaging(0.999) TCGA-44-8119-01 12 56600497 56600497 T G RNF41 Missense_Mutation p.K230Q 0.16 deleterious(0.01) benign(0.185) TCGA-44-8119-01 12 6702761 6702761 G A CHD4 Silent p.L779L 0.21 TCGA-44-8119-01 12 6839592 6839592 G T COPS7A Silent p.L185L 0.05 TCGA-44-8119-01 12 72027993 72027993 T A ZFC3H1 Missense_Mutation p.R818W 0.23 tolerated(0.05) probably_damaging(0.973) TCGA-44-8119-01 12 7528087 7528087 G T CD163L1 Missense_Mutation p.P931T 0.20 tolerated(0.1) benign(0.012) TCGA-44-8119-01 12 78520969 78520969 C G NAV3 Missense_Mutation p.L1421V 0.61 deleterious(0.01) possibly_damaging(0.869) TCGA-44-8119-01 12 85441216 85441216 G T LRRIQ1 Missense_Mutation p.V216F 0.67 deleterious(0.01) benign(0.385) TCGA-44-8119-01 12 8671721 8671721 G T CLEC4D Missense_Mutation p.A117S 0.53 tolerated(0.1) possibly_damaging(0.541) TCGA-44-8119-01 12 8757998 8757998 C A AICDA Missense_Mutation p.W80C 0.10 tolerated(0.48) probably_damaging(1) TCGA-44-8119-01 12 88900916 88900916 T C KITLG Splice_Site p.X202_splice 0.44 TCGA-44-8119-01 12 91449759 91449759 T A KERA Silent p.I100I 0.64 TCGA-44-8119-01 12 91449760 91449760 A T KERA Missense_Mutation p.I100K 0.66 deleterious(0) probably_damaging(0.936) TCGA-44-8119-01 12 94072793 94072793 G T CRADD Missense_Mutation p.W81C 0.12 deleterious(0) probably_damaging(0.999) TCGA-44-8119-01 12 96131757 96131757 A G NTN4 Missense_Mutation p.Y251H 0.07 deleterious(0) probably_damaging(0.992) TCGA-44-8119-01 13 113772890 113772891 - C F7 Frame_Shift_Ins p.E325Rfs*6 0.38 TCGA-44-8119-01 13 19748170 19748170 C G TUBA3C Missense_Mutation p.D396H 0.57 deleterious_low_confidence(0.01) possibly_damaging(0.875) TCGA-44-8119-01 13 23913458 23913458 T C SACS Silent p.G1519G 0.66 TCGA-44-8119-01 13 25428047 25428047 C T RNF17 Silent p.P1125P 0.56 TCGA-44-8119-01 13 28959111 28959112 - AGCA FLT1 Frame_Shift_Ins p.S676Mfs*11 0.15 TCGA-44-8119-01 13 32783177 32783177 A T FRY Missense_Mutation p.R1402S 0.64 deleterious(0) benign(0.092) TCGA-44-8119-01 13 38213255 38213255 C A TRPC4 Missense_Mutation p.R716S 0.65 deleterious(0) possibly_damaging(0.476) TCGA-44-8119-01 13 43935437 43935437 A T ENOX1 Nonsense_Mutation p.C120* 0.24 TCGA-44-8119-01 13 46287843 46287843 T G SPERT Missense_Mutation p.V228G 0.52 tolerated(0.19) benign(0.002) TCGA-44-8119-01 13 70371085 70371085 G T KLHL1 Missense_Mutation p.T475N 0.46 tolerated(0.18) benign(0.155) TCGA-44-8119-01 14 102463603 102463603 C G DYNC1H1 Missense_Mutation p.P1266A 0.21 probably_damaging(1) TCGA-44-8119-01 14 105354193 105354193 G A CEP170B Missense_Mutation p.S1206N 0.15 tolerated(0.28) benign(0.012) TCGA-44-8119-01 14 106054514 106054514 C T IGHA2 Silent p.P73P 0.33 TCGA-44-8119-01 14 107178879 107178879 C A IGHV2-70 Missense_Mutation p.V100F 0.49 tolerated(0.73) benign(0.011) TCGA-44-8119-01 14 20019979 20019979 C G POTEM Missense_Mutation p.G81A 0.07 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-44-8119-01 14 20295865 20295865 C A OR4N2 Silent p.L86L 0.35 TCGA-44-8119-01 14 20295898 20295898 C A OR4N2 Nonsense_Mutation p.C97* 0.21 TCGA-44-8119-01 14 20344751 20344751 G A OR4K2 Missense_Mutation p.G109R 0.19 deleterious(0) probably_damaging(0.977) TCGA-44-8119-01 14 21820969 21820969 C G SUPT16H Missense_Mutation p.E1003Q 0.09 tolerated(0.13) benign(0.403) TCGA-44-8119-01 14 22539335 22539335 C G TRAV22 Missense_Mutation p.N65K 0.35 tolerated(0.22) benign(0.138) TCGA-44-8119-01 14 23344833 23344833 C G LRP10 Missense_Mutation p.P226A 0.30 tolerated(0.85) possibly_damaging(0.841) TCGA-44-8119-01 14 52907310 52907310 C A TXNDC16 Missense_Mutation p.D659Y 0.52 deleterious(0.04) benign(0.076) TCGA-44-8119-01 14 52907311 52907311 C A TXNDC16 Missense_Mutation p.L658F 0.51 tolerated(0.13) benign(0.219) TCGA-44-8119-01 14 64483189 64483189 A G SYNE2 Splice_Site p.X1577_splice 0.31 TCGA-44-8119-01 14 71444205 71444205 G T PCNX Missense_Mutation p.S384I 0.74 deleterious(0) probably_damaging(0.998) TCGA-44-8119-01 14 73437645 73437645 C A ZFYVE1 Missense_Mutation p.W760L 0.71 deleterious(0) probably_damaging(1) TCGA-44-8119-01 14 77491906 77491906 T C IRF2BPL Missense_Mutation p.R744G 0.77 deleterious(0) unknown(0) TCGA-44-8119-01 14 77948665 77948665 C T ISM2 Missense_Mutation p.D325N 0.72 tolerated(0.07) benign(0.246) TCGA-44-8119-01 14 80328196 80328196 C T NRXN3 Silent p.N1025N 0.39 TCGA-44-8119-01 14 90420338 90420338 T A EFCAB11 Missense_Mutation p.K28I 0.73 deleterious(0.02) benign(0.314) TCGA-44-8119-01 14 92083977 92083977 T A CATSPERB Silent p.V788V 0.29 TCGA-44-8119-01 14 92572893 92572893 C T ATXN3 Missense_Mutation p.E2K 0.45 tolerated(0.06) benign(0.162) TCGA-44-8119-01 14 93118099 93118099 G T RIN3 Silent p.V235V 0.33 TCGA-44-8119-01 14 93276678 93276678 G A GOLGA5 Missense_Mutation p.D358N 0.24 deleterious(0) benign(0.312) TCGA-44-8119-01 14 94088432 94088432 C A UNC79 Missense_Mutation p.P1441H 0.48 deleterious_low_confidence(0.03) benign(0.017) TCGA-44-8119-01 14 94088845 94088845 C A UNC79 Missense_Mutation p.L1579I 0.50 deleterious_low_confidence(0.04) benign(0.018) TCGA-44-8119-01 15 20496675 20496675 G C CHEK2P2 RNA 0.17 TCGA-44-8119-01 15 22383177 22383177 G T OR4N4 Missense_Mutation p.K235N 0.20 deleterious(0) possibly_damaging(0.845) TCGA-44-8119-01 15 23811668 23811668 G A MKRN3 Missense_Mutation p.A247T 0.63 deleterious(0) probably_damaging(0.984) TCGA-44-8119-01 15 23890765 23890765 C A MAGEL2 Missense_Mutation p.G106C 0.78 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-44-8119-01 15 24923357 24923357 G T NPAP1 Missense_Mutation p.Q781H 0.70 deleterious(0) possibly_damaging(0.891) TCGA-44-8119-01 15 25477611 25477611 G A SNORD115-34 RNA 0.32 TCGA-44-8119-01 15 25616235 25616235 A T UBE3A Missense_Mutation p.D365E 0.68 tolerated(0.19) benign(0.443) TCGA-44-8119-01 15 33954689 33954689 C A RYR3 Missense_Mutation p.P1653H 0.68 probably_damaging(0.947) TCGA-44-8119-01 15 42151129 42151129 C A SPTBN5 Nonsense_Mutation p.E2680* 0.62 TCGA-44-8119-01 15 44914078 44914078 G A SPG11 Silent p.F833F 0.77 TCGA-44-8119-01 15 48500121 48500121 T A SLC12A1 Missense_Mutation p.C69S 0.33 tolerated(1) benign(0) TCGA-44-8119-01 15 50774206 50774206 A T USP8 Nonsense_Mutation p.K583* 0.33 TCGA-44-8119-01 15 55647133 55647133 C T PIGB Missense_Mutation p.A492V 0.29 tolerated(0.24) benign(0.003) TCGA-44-8119-01 15 58247428 58247428 C A ALDH1A2 Silent p.T508T 0.69 TCGA-44-8119-01 15 64915055 64915055 G T ZNF609 Silent p.V259V 0.67 TCGA-44-8119-01 15 72698967 72698967 T A TMEM202 Missense_Mutation p.F121Y 0.33 deleterious(0.01) possibly_damaging(0.876) TCGA-44-8119-01 15 76430125 76430125 C A C15orf27 Missense_Mutation p.P39H 0.71 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-44-8119-01 15 97327421 97327421 C T SPATA8 Missense_Mutation p.P43L 0.58 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-44-8119-01 16 15029255 15029255 G T NPIPA1 5'Flank 0.11 TCGA-44-8119-01 16 24573481 24573481 C T RBBP6 Missense_Mutation p.R430W 0.20 deleterious_low_confidence(0.01) probably_damaging(0.927) TCGA-44-8119-01 16 27078459 27078459 G T C16orf82 RNA 0.86 TCGA-44-8119-01 16 29912498 29912498 T C ASPHD1 Missense_Mutation p.L69P 0.15 tolerated_low_confidence(0.14) benign(0) TCGA-44-8119-01 16 31286996 31286996 C T ITGAM Missense_Mutation p.R329W 0.20 deleterious(0) possibly_damaging(0.601) TCGA-44-8119-01 16 31383041 31383041 G T ITGAX Missense_Mutation p.S699I 0.26 tolerated(0.07) benign(0.009) TCGA-44-8119-01 16 31926460 31926460 A T ZNF267 Missense_Mutation p.Y297F 0.43 deleterious(0) benign(0.043) TCGA-44-8119-01 16 32063565 32063565 G T AC142381.1 Silent p.L85L 0.40 TCGA-44-8119-01 16 46764530 46764530 C T MYLK3 Missense_Mutation p.V515M 0.32 deleterious(0.01) possibly_damaging(0.736) TCGA-44-8119-01 16 47409828 47409828 C T ITFG1 Missense_Mutation p.A227T 0.27 tolerated(0.52) benign(0.001) TCGA-44-8119-01 16 51173947 51173948 GT - SALL1 Frame_Shift_Del p.T729Wfs*6 0.19 TCGA-44-8119-01 16 53276875 53276875 A G CHD9 Missense_Mutation p.R1001G 0.33 probably_damaging(0.999) TCGA-44-8119-01 16 55725948 55725948 G A SLC6A2 Missense_Mutation p.R301H 0.37 tolerated(0.07) benign(0.327) TCGA-44-8119-01 16 55729202 55729202 G T SLC6A2 Silent p.L345L 0.30 TCGA-44-8119-01 16 56396558 56396558 C G AMFR 3'UTR 0.18 TCGA-44-8119-01 16 67315714 67315714 C T PLEKHG4 Missense_Mutation p.H327Y 0.32 deleterious(0) probably_damaging(0.991) TCGA-44-8119-01 16 70998668 70998668 C T HYDIN Missense_Mutation p.M1917I 0.19 benign(0) TCGA-44-8119-01 16 71101254 71101254 C G HYDIN Missense_Mutation p.A672P 0.29 probably_damaging(0.994) TCGA-44-8119-01 16 71779510 71779510 G - AP1G1 Frame_Shift_Del p.L583Yfs*11 0.19 TCGA-44-8119-01 16 81145815 81145815 C A PKD1L2 RNA 0.45 TCGA-44-8119-01 16 83520231 83520231 G T CDH13 Missense_Mutation p.V358F 0.21 deleterious(0) probably_damaging(0.999) TCGA-44-8119-01 16 84778607 84778607 G A USP10 Missense_Mutation p.E174K 0.23 tolerated_low_confidence(0.15) benign(0.059) TCGA-44-8119-01 16 90001795 90001795 G T TUBB3 Silent p.T312T 0.43 TCGA-44-8119-01 17 10402041 10402041 T C MYH1 Silent p.L1361L 0.74 TCGA-44-8119-01 17 13399951 13399951 C A HS3ST3A1 Missense_Mutation p.D262Y 0.31 deleterious(0) probably_damaging(0.938) TCGA-44-8119-01 17 17412823 17412823 G A PEMT Missense_Mutation p.T168I 0.64 deleterious(0.02) benign(0.315) TCGA-44-8119-01 17 21731522 21731522 C G UBBP4 Silent p.G199G 0.11 TCGA-44-8119-01 17 26108164 26108164 C T NOS2 Silent p.K254K 0.12 TCGA-44-8119-01 17 29281514 29281514 A T ADAP2 Nonsense_Mutation p.K275* 0.15 TCGA-44-8119-01 17 29486064 29486064 C G NF1 Missense_Mutation p.L81V 0.14 deleterious(0.04) benign(0.055) TCGA-44-8119-01 17 33769162 33769162 C A SLFN13 Missense_Mutation p.D448Y 0.14 deleterious(0) probably_damaging(1) TCGA-44-8119-01 17 34234291 34234291 G A AC015849.16 RNA 0.36 TCGA-44-8119-01 17 35518811 35518811 C - ACACA Frame_Shift_Del p.A1745Qfs*32 0.37 TCGA-44-8119-01 17 35766491 35766491 C T ACACA 5'UTR 0.15 TCGA-44-8119-01 17 36288290 36288290 G T TBC1D3F Nonsense_Mutation p.G126* 0.06 TCGA-44-8119-01 17 36478394 36478394 G T MRPL45 Silent p.T279T 0.33 TCGA-44-8119-01 17 36874166 36874166 C T MLLT6 Silent p.A634A 0.15 TCGA-44-8119-01 17 37187647 37187647 G T CTD-2206N4.2 5'Flank 0.53 TCGA-44-8119-01 17 38906777 38906777 G T KRT25 Missense_Mutation p.Q344K 0.29 tolerated(0.18) benign(0.394) TCGA-44-8119-01 17 39388824 39388824 T G KRTAP9-3 Missense_Mutation p.V24G 0.22 tolerated(0.14) unknown(0) TCGA-44-8119-01 17 39535866 39535866 C T KRT34 Missense_Mutation p.V278M 0.26 tolerated(0.19) possibly_damaging(0.513) TCGA-44-8119-01 17 39577837 39577837 C A KRT37 Missense_Mutation p.K341N 0.28 deleterious(0) possibly_damaging(0.861) TCGA-44-8119-01 17 39777909 39777909 C G KRT17 Missense_Mutation p.R257P 0.23 deleterious(0) probably_damaging(0.999) TCGA-44-8119-01 17 40481429 40481429 T C STAT3 Missense_Mutation p.D427G 0.12 deleterious(0.03) probably_damaging(0.997) TCGA-44-8119-01 17 41180651 41180651 A T RND2 Missense_Mutation p.E213V 0.56 tolerated(0.3) benign(0.023) TCGA-44-8119-01 17 41226442 41226442 C A BRCA1 Missense_Mutation p.E1548D 0.43 tolerated(0.09) benign(0.03) TCGA-44-8119-01 17 42328915 42328915 G - SLC4A1 Frame_Shift_Del p.L785Wfs*44 0.37 TCGA-44-8119-01 17 42452083 42452083 C A ITGA2B Missense_Mutation p.V963L 0.16 deleterious(0.01) probably_damaging(0.979) TCGA-44-8119-01 17 42636617 42636617 T A FZD2 Missense_Mutation p.Y521N 0.62 deleterious(0) possibly_damaging(0.863) TCGA-44-8119-01 17 48153048 48153048 C T ITGA3 Silent p.G541G 0.11 TCGA-44-8119-01 17 51901297 51901297 C A KIF2B Silent p.A301A 0.58 TCGA-44-8119-01 17 53084905 53084905 G T STXBP4 Nonsense_Mutation p.E205* 0.53 TCGA-44-8119-01 17 56573195 56573195 T A MTMR4 Missense_Mutation p.N770Y 0.10 deleterious_low_confidence(0.02) benign(0.109) TCGA-44-8119-01 17 57465723 57465723 T G YPEL2 Missense_Mutation p.F51L 0.29 deleterious(0.02) possibly_damaging(0.464) TCGA-44-8119-01 17 60106911 60106911 C A MED13 Missense_Mutation p.S425I 0.16 deleterious(0.05) benign(0.003) TCGA-44-8119-01 17 61601678 61601678 C A KCNH6 Silent p.A85A 0.19 TCGA-44-8119-01 17 61601679 61601679 C A KCNH6 Missense_Mutation p.L86M 0.20 deleterious(0) probably_damaging(0.998) TCGA-44-8119-01 17 61601680 61601680 T G KCNH6 Missense_Mutation p.L86R 0.20 deleterious(0) probably_damaging(0.998) TCGA-44-8119-01 17 61907257 61907257 C T PSMC5 Missense_Mutation p.S71F 0.35 tolerated(0.09) probably_damaging(0.999) TCGA-44-8119-01 17 61907258 61907258 C A PSMC5 Silent p.S71S 0.35 TCGA-44-8119-01 17 62018510 62018510 G T SCN4A Missense_Mutation p.S1711Y 0.28 deleterious(0) probably_damaging(0.95) TCGA-44-8119-01 17 62131640 62131640 G A ERN1 Silent p.A641A 0.56 TCGA-44-8119-01 17 66347725 66347725 A G ARSG Missense_Mutation p.Y155C 0.15 deleterious(0.01) benign(0.286) TCGA-44-8119-01 17 71380021 71380021 G A SDK2 Missense_Mutation p.L1567F 0.36 deleterious(0.02) probably_damaging(0.94) TCGA-44-8119-01 17 74077680 74077680 G A ZACN Missense_Mutation p.E242K 0.12 tolerated(0.51) benign(0.162) TCGA-44-8119-01 17 7801902 7801902 C G CHD3 Missense_Mutation p.P773A 0.63 possibly_damaging(0.539) TCGA-44-8119-01 18 14542948 14542948 G A POTEC Silent p.H66H 0.18 TCGA-44-8119-01 18 19997745 19997745 A G CTAGE1 Silent p.F10F 0.15 TCGA-44-8119-01 18 22901976 22901976 C A ZNF521 Silent p.L72L 0.33 TCGA-44-8119-01 18 25583000 25583000 A C CDH2 Silent p.T327T 0.39 TCGA-44-8119-01 18 28587012 28587012 G C DSC3 Silent p.V583V 0.41 TCGA-44-8119-01 18 31323340 31323340 G T ASXL3 Silent p.R1176R 0.29 TCGA-44-8119-01 18 42530898 42530898 G T SETBP1 Missense_Mutation p.R531S 0.42 deleterious(0) probably_damaging(0.993) TCGA-44-8119-01 18 44555239 44555239 G T TCEB3C Silent p.G325G 0.02 TCGA-44-8119-01 18 5291498 5291498 G C ZBTB14 Missense_Mutation p.Q237E 0.39 tolerated(0.62) benign(0.002) TCGA-44-8119-01 18 67068528 67068528 C A DOK6 Silent p.I16I 0.15 TCGA-44-8119-01 18 670798 670798 C T TYMS Silent p.L221L 0.13 TCGA-44-8119-01 18 67425043 67425043 C A DOK6 Missense_Mutation p.P264T 0.43 deleterious(0) probably_damaging(1) TCGA-44-8119-01 18 67733105 67733105 T A RTTN Silent p.T1569T 0.35 TCGA-44-8119-01 18 70417788 70417788 G A NETO1 Silent p.S350S 0.16 TCGA-44-8119-01 18 77227512 77227512 C T NFATC1 Silent p.V661V 0.34 TCGA-44-8119-01 19 1044633 1044633 C A ABCA7 Missense_Mutation p.H369N 0.09 tolerated(0.69) benign(0) TCGA-44-8119-01 19 11132437 11132437 C T SMARCA4 Missense_Mutation p.R885C 0.46 probably_damaging(0.998) TCGA-44-8119-01 19 1220370 1220370 A C STK11 Splice_Site p.X155_splice 0.64 TCGA-44-8119-01 19 1220371 1220371 G T STK11 Splice_Site p.X155_splice 0.64 TCGA-44-8119-01 19 1220372 1220372 G T STK11 Silent p.G155G 0.64 TCGA-44-8119-01 19 12788168 12788168 G A DHPS Silent p.L241L 0.46 TCGA-44-8119-01 19 13368192 13368192 A C CACNA1A Missense_Mutation p.M1521R 0.48 benign(0.402) TCGA-44-8119-01 19 13991269 13991269 C T NANOS3 Silent p.A177A 0.63 TCGA-44-8119-01 19 1481835 1481835 G A PCSK4 Missense_Mutation p.L731F 0.74 tolerated_low_confidence(0.27) benign(0.035) TCGA-44-8119-01 19 15061052 15061052 C A SLC1A6 Missense_Mutation p.E550D 0.50 tolerated(0.19) probably_damaging(0.935) TCGA-44-8119-01 19 15918595 15918595 G A OR10H1 Silent p.L85L 0.61 TCGA-44-8119-01 19 16040370 16040370 C A CYP4F11 Silent p.L80L 0.62 TCGA-44-8119-01 19 16910854 16910854 G T NWD1 Missense_Mutation p.R1206L 0.51 deleterious(0.02) benign(0.413) TCGA-44-8119-01 19 22270889 22270889 T C ZNF257 Silent p.L113L 0.21 TCGA-44-8119-01 19 22363743 22363743 C A ZNF676 Missense_Mutation p.G259V 0.39 deleterious(0.01) probably_damaging(1) TCGA-44-8119-01 19 22605109 22605109 G C ZNF98 5'UTR 0.36 TCGA-44-8119-01 19 22939013 22939013 C A ZNF99 3'Flank 0.40 TCGA-44-8119-01 19 2853142 2853142 G C ZNF555 Missense_Mutation p.R360T 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-44-8119-01 19 2853143 2853143 G T ZNF555 Missense_Mutation p.R360S 0.13 deleterious(0) probably_damaging(0.999) TCGA-44-8119-01 19 30935263 30935263 A T ZNF536 Missense_Mutation p.E265V 0.71 deleterious(0.04) probably_damaging(0.996) TCGA-44-8119-01 19 30935941 30935941 G T ZNF536 Missense_Mutation p.C491F 0.55 tolerated(0.12) possibly_damaging(0.851) TCGA-44-8119-01 19 31038946 31038946 A G ZNF536 Missense_Mutation p.N807S 0.37 deleterious(0.01) possibly_damaging(0.869) TCGA-44-8119-01 19 31038947 31038947 C G ZNF536 Missense_Mutation p.N807K 0.38 deleterious(0) probably_damaging(0.965) TCGA-44-8119-01 19 36015812 36015812 G T SBSN Missense_Mutation p.S551R 0.31 deleterious(0.04) benign(0.212) TCGA-44-8119-01 19 36245159 36245159 G A LIN37 Missense_Mutation p.E200K 0.07 tolerated(0.78) benign(0.018) TCGA-44-8119-01 19 36330243 36330243 C G NPHS1 Missense_Mutation p.G1002A 0.11 deleterious(0.01) probably_damaging(0.971) TCGA-44-8119-01 19 36431252 36431252 G T LRFN3 Missense_Mutation p.A309S 0.45 deleterious(0.01) benign(0.421) TCGA-44-8119-01 19 36517903 36517903 G A CLIP3 Silent p.T117T 0.12 TCGA-44-8119-01 19 37147401 37147401 C G ZNF461 Missense_Mutation p.G61R 0.17 deleterious(0.03) benign(0.026) TCGA-44-8119-01 19 38817562 38817562 G T KCNK6 Missense_Mutation p.G218C 0.46 deleterious(0) probably_damaging(1) TCGA-44-8119-01 19 38858341 38858341 G T CATSPERG Missense_Mutation p.G952V 0.41 deleterious(0) probably_damaging(0.979) TCGA-44-8119-01 19 42132221 42132221 C A CEACAM4 Nonsense_Mutation p.E60* 0.20 TCGA-44-8119-01 19 42596240 42596240 C A POU2F2 Missense_Mutation p.G461C 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-44-8119-01 19 43519464 43519464 G T PSG11 Missense_Mutation p.N256K 0.51 deleterious(0.04) benign(0.064) TCGA-44-8119-01 19 43766111 43766111 G T PSG9 Missense_Mutation p.L204I 0.11 tolerated(0.22) benign(0.045) TCGA-44-8119-01 19 43965971 43965971 C A LYPD3 Silent p.R191R 0.15 TCGA-44-8119-01 19 45996471 45996471 G T RTN2 Missense_Mutation p.P327Q 0.16 tolerated_low_confidence(0.33) benign(0.035) TCGA-44-8119-01 19 49841283 49841283 C - CD37 Frame_Shift_Del p.Q149Sfs*19 0.33 TCGA-44-8119-01 19 49845839 49845839 C A TEAD2 Silent p.R366R 0.42 TCGA-44-8119-01 19 53208787 53208787 C T ZNF611 Silent p.E507E 0.39 TCGA-44-8119-01 19 53762489 53762489 C T VN1R2 Silent p.V287V 0.52 TCGA-44-8119-01 19 53762621 53762621 C A VN1R2 Silent p.S331S 0.22 TCGA-44-8119-01 19 54385769 54385769 C G PRKCG Silent p.G7G 0.15 TCGA-44-8119-01 19 54445586 54445586 C T CACNG7 3'UTR 0.19 TCGA-44-8119-01 19 54759300 54759300 A T LILRB5 Silent p.S267S 0.61 TCGA-44-8119-01 19 55145102 55145102 C A LILRB1 Silent p.G425G 0.45 TCGA-44-8119-01 19 55222135 55222135 G T AC098784.2 3'Flank 0.52 TCGA-44-8119-01 19 55441868 55441868 G A NLRP7 Missense_Mutation p.R937C 0.60 tolerated(0.1) possibly_damaging(0.786) TCGA-44-8119-01 19 56466487 56466487 C A NLRP8 Missense_Mutation p.P355T 0.17 tolerated(1) benign(0.017) TCGA-44-8119-01 19 57327582 57327582 C A PEG3 Missense_Mutation p.S743I 0.15 tolerated(0.11) benign(0.096) TCGA-44-8119-01 19 58101804 58101804 A T ZIK1 Missense_Mutation p.S209C 0.31 deleterious(0.02) possibly_damaging(0.667) TCGA-44-8119-01 19 622627 622627 C A POLRMT Missense_Mutation p.Q527H 0.74 deleterious(0.05) benign(0.396) TCGA-44-8119-01 19 6495227 6495227 G A TUBB4A Missense_Mutation p.A428V 0.64 tolerated_low_confidence(0.07) unknown(0) TCGA-44-8119-01 19 9074961 9074961 A G MUC16 Missense_Mutation p.L4162P 0.60 unknown(0) TCGA-44-8119-01 19 9965139 9965139 G T OLFM2 Missense_Mutation p.T363N 0.64 deleterious(0) probably_damaging(1) TCGA-44-8119-01 1 100380944 100380944 G T AGL Splice_Site p.X1388_splice 0.11 TCGA-44-8119-01 1 100757119 100757119 A G RTCA 3'UTR 0.30 TCGA-44-8119-01 1 109395299 109395299 C A AKNAD1 5'UTR 0.18 TCGA-44-8119-01 1 11579887 11579887 T A PTCHD2 Missense_Mutation p.L717Q 0.67 deleterious(0) probably_damaging(0.962) TCGA-44-8119-01 1 116206392 116206392 G T VANGL1 Silent p.L105L 0.33 TCGA-44-8119-01 1 116206393 116206393 G T VANGL1 Missense_Mutation p.D106Y 0.34 tolerated(0.05) possibly_damaging(0.639) TCGA-44-8119-01 1 119575634 119575634 T C WARS2 Missense_Mutation p.K328R 0.32 tolerated(0.61) benign(0.002) TCGA-44-8119-01 1 120263879 120263879 G T PHGDH Missense_Mutation p.R75S 0.24 deleterious(0) probably_damaging(1) TCGA-44-8119-01 1 1225740 1225750 CTGCAGCTCTG - SCNN1D Frame_Shift_Del p.C585Pfs*60 0.12 TCGA-44-8119-01 1 12955569 12955569 G T PRAMEF10 Missense_Mutation p.P37H 0.11 deleterious(0) probably_damaging(0.978) TCGA-44-8119-01 1 144873939 144873939 C G PDE4DIP Missense_Mutation p.S1673T 0.08 deleterious(0.03) possibly_damaging(0.46) TCGA-44-8119-01 1 145075673 145075673 C T PDE4DIP Missense_Mutation p.A64T 0.16 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-44-8119-01 1 149761619 149761619 C A FCGR1A Missense_Mutation p.P190Q 0.07 tolerated(0.24) possibly_damaging(0.693) TCGA-44-8119-01 1 149858833 149858833 C A HIST2H2AC Silent p.I103I 0.14 TCGA-44-8119-01 1 152285559 152285559 T A FLG Silent p.S601S 0.18 TCGA-44-8119-01 1 152328989 152328989 G T FLG2 Missense_Mutation p.Q425K 0.11 unknown(0) TCGA-44-8119-01 1 152857285 152857285 G T SMCP 3'UTR 0.29 TCGA-44-8119-01 1 154909116 154909116 C T PMVK Missense_Mutation p.G16S 0.47 deleterious(0) probably_damaging(1) TCGA-44-8119-01 1 156376684 156376684 G A C1orf61 Intron 0.25 TCGA-44-8119-01 1 158225084 158225084 G C CD1A Missense_Mutation p.R90P 0.32 deleterious(0) benign(0.277) TCGA-44-8119-01 1 158227280 158227280 C T CD1A Missense_Mutation p.A318V 0.12 tolerated(0.34) benign(0.001) TCGA-44-8119-01 1 158576546 158576546 A G OR10Z1 Silent p.S106S 0.31 TCGA-44-8119-01 1 159170722 159170722 C A CADM3 3'UTR 0.27 TCGA-44-8119-01 1 159175725 159175725 A T DARC Missense_Mutation p.T168S 0.25 tolerated(0.34) possibly_damaging(0.893) TCGA-44-8119-01 1 160160524 160160524 C A CASQ1 5'UTR 0.36 TCGA-44-8119-01 1 162313682 162313682 C T NOS1AP Silent p.L171L 0.47 TCGA-44-8119-01 1 162729678 162729678 A T DDR2 Missense_Mutation p.D255V 0.41 deleterious(0) probably_damaging(1) TCGA-44-8119-01 1 165173254 165173254 G T LMX1A Missense_Mutation p.L338M 0.35 tolerated(0.38) benign(0.004) TCGA-44-8119-01 1 167096858 167096858 T C DUSP27 Silent p.N830N 0.49 TCGA-44-8119-01 1 169495246 169495246 T C F5 Missense_Mutation p.K1870R 0.17 tolerated(0.42) benign(0.343) TCGA-44-8119-01 1 17531735 17531735 A G PADI1 Missense_Mutation p.Q8R 0.56 tolerated(1) benign(0.006) TCGA-44-8119-01 1 177242663 177242663 T A BRINP2 Missense_Mutation p.Y237N 0.26 deleterious(0) probably_damaging(0.996) TCGA-44-8119-01 1 179887051 179887051 G T TOR1AIP1 Missense_Mutation p.V477L 0.41 tolerated(0.07) probably_damaging(0.996) TCGA-44-8119-01 1 18554486 18554486 G T IGSF21 Silent p.R55R 0.69 TCGA-44-8119-01 1 192153451 192153451 G A RGS18 Missense_Mutation p.E159K 0.39 deleterious(0.05) probably_damaging(0.996) TCGA-44-8119-01 1 196197403 196197403 C G KCNT2 Missense_Mutation p.S1120T 0.45 deleterious_low_confidence(0.01) probably_damaging(0.942) TCGA-44-8119-01 1 196749075 196749075 G T CFHR3 Missense_Mutation p.W134C 0.41 deleterious(0) probably_damaging(0.942) TCGA-44-8119-01 1 197009688 197009688 C A F13B Missense_Mutation p.G639V 0.44 deleterious(0) probably_damaging(1) TCGA-44-8119-01 1 197070786 197070786 T A ASPM Missense_Mutation p.H2532L 0.27 tolerated(0.08) benign(0.21) TCGA-44-8119-01 1 204242836 204242836 C A PLEKHA6 Missense_Mutation p.G7V 0.36 deleterious(0.01) possibly_damaging(0.846) TCGA-44-8119-01 1 207262834 207262834 A T C4BPB 5'UTR 0.48 TCGA-44-8119-01 1 207307917 207307917 G T C4BPA Missense_Mutation p.R418L 0.28 tolerated(0.11) benign(0.034) TCGA-44-8119-01 1 207648449 207648449 T A CR2 Missense_Mutation p.N868K 0.12 tolerated(0.06) possibly_damaging(0.816) TCGA-44-8119-01 1 214209055 214209055 G T PROX1 Missense_Mutation p.A698S 0.33 tolerated(0.15) benign(0.23) TCGA-44-8119-01 1 222922904 222922904 G A FAM177B Silent p.K113K 0.40 TCGA-44-8119-01 1 228402529 228402529 G T OBSCN Missense_Mutation p.V520L 0.26 benign(0.392) TCGA-44-8119-01 1 22970582 22970582 G C C1QC Silent p.L22L 0.60 TCGA-44-8119-01 1 236883437 236883437 G T ACTN2 Missense_Mutation p.G132C 0.43 deleterious(0) probably_damaging(0.997) TCGA-44-8119-01 1 237868587 237868587 T A RYR2 Missense_Mutation p.L3175Q 0.35 benign(0.424) TCGA-44-8119-01 1 237947029 237947029 C G RYR2 Missense_Mutation p.S4006C 0.43 probably_damaging(0.999) TCGA-44-8119-01 1 240371673 240371673 G T FMN2 Silent p.P1187P 0.24 TCGA-44-8119-01 1 241099947 241099947 C A RGS7 Missense_Mutation p.D96Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-44-8119-01 1 248005092 248005092 C A OR11L1 Missense_Mutation p.C36F 0.11 tolerated(0.38) benign(0) TCGA-44-8119-01 1 248308878 248308878 T A OR2M5 Silent p.L143L 0.13 TCGA-44-8119-01 1 248367055 248367055 G A OR2M3 Missense_Mutation p.G229E 0.42 tolerated(0.95) benign(0.049) TCGA-44-8119-01 1 248402275 248402275 G T OR2M4 Silent p.L15L 0.40 TCGA-44-8119-01 1 248402276 248402276 G T OR2M4 Nonsense_Mutation p.G16* 0.41 TCGA-44-8119-01 1 248813771 248813771 T A OR2T27 Nonsense_Mutation p.K139* 0.25 TCGA-44-8119-01 1 32157092 32157092 G A COL16A1 Missense_Mutation p.P442S 0.20 unknown(0) TCGA-44-8119-01 1 32672689 32672689 T C IQCC Missense_Mutation p.W256R 0.25 deleterious(0) probably_damaging(0.998) TCGA-44-8119-01 1 34038111 34038111 C A CSMD2 Missense_Mutation p.C2588F 0.50 deleterious(0.01) probably_damaging(0.982) TCGA-44-8119-01 1 36020040 36020040 C A KIAA0319L Missense_Mutation p.G18V 0.14 tolerated_low_confidence(0.11) benign(0.107) TCGA-44-8119-01 1 36785482 36785482 G T SH3D21 Missense_Mutation p.K406N 0.48 deleterious(0.01) benign(0.395) TCGA-44-8119-01 1 38048466 38048466 G A GNL2 Silent p.H236H 0.22 TCGA-44-8119-01 1 38078340 38078340 C - RSPO1 3'UTR 0.21 TCGA-44-8119-01 1 40129047 40129047 C T NT5C1A Missense_Mutation p.A165T 0.18 deleterious(0.04) probably_damaging(0.913) TCGA-44-8119-01 1 41978935 41978935 G A HIVEP3 Missense_Mutation p.S1986L 0.06 benign(0.053) TCGA-44-8119-01 1 44461274 44461274 G A CCDC24 Missense_Mutation p.R185H 0.12 tolerated(0.57) benign(0.002) TCGA-44-8119-01 1 52902593 52902593 T A ZCCHC11 Missense_Mutation p.E1332D 0.11 tolerated(0.18) probably_damaging(0.968) TCGA-44-8119-01 1 55589208 55589208 T C USP24 Silent p.Q1396Q 0.69 TCGA-44-8119-01 1 76356489 76356489 G A MSH4 Missense_Mutation p.E779K 0.18 deleterious(0) probably_damaging(0.994) TCGA-44-8119-01 1 84403638 84403638 C A TTLL7 Missense_Mutation p.R262L 0.40 deleterious(0) probably_damaging(0.99) TCGA-44-8119-01 1 86959877 86959877 C A CLCA1 Missense_Mutation p.T563N 0.15 tolerated(0.55) benign(0.006) TCGA-44-8119-01 1 87570197 87570197 A G HS2ST1 Missense_Mutation p.T297A 0.17 tolerated(0.14) benign(0.001) TCGA-44-8119-01 1 89729576 89729576 G A GBP5 Missense_Mutation p.S402L 0.13 tolerated(0.52) benign(0.086) TCGA-44-8119-01 1 94476463 94476463 C G ABCA4 Silent p.P1869P 0.27 TCGA-44-8119-01 1 95358064 95358064 A C SLC44A3 Missense_Mutation p.Q616H 0.17 tolerated(0.07) benign(0.02) TCGA-44-8119-01 20 10273813 10273813 A G SNAP25 Silent p.Q56Q 0.18 TCGA-44-8119-01 20 20505124 20505124 G A RALGAPA2 Missense_Mutation p.L1276F 0.11 deleterious(0) benign(0.291) TCGA-44-8119-01 20 25481560 25481560 G A NINL Silent p.D316D 0.13 TCGA-44-8119-01 20 3016326 3016326 C A PTPRA Silent p.T672T 0.07 TCGA-44-8119-01 20 31876618 31876618 C T BPIFB1 Missense_Mutation p.R63W 0.09 deleterious(0) probably_damaging(0.912) TCGA-44-8119-01 20 34572615 34572615 C T CNBD2 Silent p.L211L 0.26 TCGA-44-8119-01 20 35282092 35282092 C A NDRG3 Missense_Mutation p.S320I 0.19 deleterious(0.03) benign(0.221) TCGA-44-8119-01 20 3684502 3684502 C A SIGLEC1 Missense_Mutation p.V315F 0.07 deleterious(0.01) possibly_damaging(0.885) TCGA-44-8119-01 20 37169802 37169802 G T RALGAPB Missense_Mutation p.R894M 0.48 deleterious(0) probably_damaging(0.999) TCGA-44-8119-01 20 37169803 37169803 G T RALGAPB Missense_Mutation p.R894S 0.50 deleterious(0) probably_damaging(0.998) TCGA-44-8119-01 20 41100981 41100981 G T PTPRT Silent p.R459R 0.61 TCGA-44-8119-01 20 42089428 42089428 G T SRSF6 Missense_Mutation p.D254Y 0.11 deleterious(0.01) unknown(0) TCGA-44-8119-01 20 44665431 44665431 C A SLC12A5 Missense_Mutation p.P183T 0.07 deleterious(0.02) probably_damaging(0.995) TCGA-44-8119-01 20 44674612 44674612 C G SLC12A5 Missense_Mutation p.D578E 0.19 tolerated(0.08) probably_damaging(0.981) TCGA-44-8119-01 20 4705390 4705390 A T PRND Nonsense_Mutation p.K65* 0.21 TCGA-44-8119-01 20 55803373 55803373 G A BMP7 Missense_Mutation p.R175W 0.11 deleterious(0) probably_damaging(0.999) TCGA-44-8119-01 20 56136623 56136623 G T PCK1 Missense_Mutation p.E52D 0.45 deleterious(0.03) possibly_damaging(0.541) TCGA-44-8119-01 20 56139593 56139593 C T PCK1 Silent p.P414P 0.36 TCGA-44-8119-01 20 57393348 57393348 C G MIR298 RNA 0.09 TCGA-44-8119-01 20 57766244 57766244 C A ZNF831 Missense_Mutation p.A57D 0.50 deleterious(0) probably_damaging(0.998) TCGA-44-8119-01 20 58444871 58444871 A T SYCP2 Nonsense_Mutation p.Y1241* 0.18 TCGA-44-8119-01 20 8737819 8737819 G T PLCB1 Missense_Mutation p.A884S 0.61 tolerated(0.45) benign(0.002) TCGA-44-8119-01 20 9389319 9389319 C T PLCB4 Missense_Mutation p.S598L 0.65 deleterious(0) possibly_damaging(0.7) TCGA-44-8119-01 20 9389825 9389825 C A PLCB4 Missense_Mutation p.P654T 0.12 deleterious(0.04) benign(0.031) TCGA-44-8119-01 21 10862983 10862983 A C IGHV1OR21-1 Silent p.T93T 0.19 TCGA-44-8119-01 21 31913979 31913982 GTAG TTA KRTAP19-6 Frame_Shift_Del p.Y58Nfs*28 0.53 TCGA-44-8119-01 21 32598187 32598187 T C TIAM1 Missense_Mutation p.H555R 0.73 tolerated(0.49) possibly_damaging(0.665) TCGA-44-8119-01 21 33246117 33246117 G T HUNK Missense_Mutation p.V44L 0.55 tolerated(0.32) benign(0.01) TCGA-44-8119-01 21 34726020 34726020 G T IFNAR1 Silent p.A457A 0.70 TCGA-44-8119-01 21 43221436 43221436 C A PRDM15 Missense_Mutation p.Q1496H 0.79 deleterious_low_confidence(0.03) benign(0.001) TCGA-44-8119-01 21 45563112 45563112 G T C21orf33 Missense_Mutation p.A183S 0.48 deleterious(0.01) probably_damaging(0.987) TCGA-44-8119-01 21 45563113 45563113 C T C21orf33 Missense_Mutation p.A183V 0.50 tolerated(0.09) possibly_damaging(0.537) TCGA-44-8119-01 22 19839772 19839772 G A C22orf29 Missense_Mutation p.R5W 0.13 tolerated_low_confidence(0.11) benign(0.001) TCGA-44-8119-01 22 21341819 21341819 C - LZTR1 Frame_Shift_Del p.R118Vfs*29 0.43 TCGA-44-8119-01 22 23632590 23632590 G T BCR Missense_Mutation p.K924N 0.74 tolerated(0.05) probably_damaging(0.937) TCGA-44-8119-01 22 26688854 26688854 G T SEZ6L Missense_Mutation p.V193F 0.69 tolerated(0.49) benign(0.11) TCGA-44-8119-01 22 32000907 32000907 G C SFI1 Missense_Mutation p.S677T 0.18 tolerated(0.05) benign(0.431) TCGA-44-8119-01 22 32838716 32838716 G T BPIFC Silent p.L199L 0.72 TCGA-44-8119-01 22 38823566 38823566 G A KCNJ4 Missense_Mutation p.A191V 0.25 deleterious(0) probably_damaging(0.998) TCGA-44-8119-01 22 45312223 45312223 G A PHF21B Silent p.T167T 0.76 TCGA-44-8119-01 22 51183719 51183719 A G ACR 3'UTR 0.94 TCGA-44-8119-01 2 102957160 102957160 C T IL1RL1 Missense_Mutation p.A161V 0.15 tolerated(0.35) benign(0.008) TCGA-44-8119-01 2 102992516 102992516 A T IL18R1 Silent p.I206I 0.18 TCGA-44-8119-01 2 111542308 111542308 G T ACOXL Splice_Site p.X26_splice 0.42 TCGA-44-8119-01 2 111542309 111542309 G T ACOXL Missense_Mutation p.A26S 0.42 deleterious(0.03) benign(0.033) TCGA-44-8119-01 2 113514324 113514324 C A CKAP2L Missense_Mutation p.K208N 0.30 deleterious(0) probably_damaging(0.978) TCGA-44-8119-01 2 11756768 11756768 G T GREB1 Nonsense_Mutation p.E1112* 0.44 TCGA-44-8119-01 2 125555843 125555843 C G CNTNAP5 Missense_Mutation p.L1054V 0.29 deleterious(0.04) benign(0.426) TCGA-44-8119-01 2 127826603 127826603 C A BIN1 Missense_Mutation p.R139L 0.47 deleterious(0) probably_damaging(0.975) TCGA-44-8119-01 2 140992417 140992417 G T LRP1B Missense_Mutation p.L4533I 0.50 benign(0) TCGA-44-8119-01 2 158140835 158140835 G C GALNT5 Missense_Mutation p.S499T 0.46 tolerated(0.22) possibly_damaging(0.811) TCGA-44-8119-01 2 158412823 158412823 A T ACVR1C Missense_Mutation p.L109H 0.30 tolerated(0.51) benign(0.19) TCGA-44-8119-01 2 158412824 158412824 G A ACVR1C Missense_Mutation p.L109F 0.29 tolerated(0.73) benign(0.025) TCGA-44-8119-01 2 160602444 160602444 A T MARCH7 Silent p.S170S 0.29 TCGA-44-8119-01 2 160690696 160690696 C T LY75-CD302 Missense_Mutation p.V1234I 0.21 tolerated(0.23) benign(0.002) TCGA-44-8119-01 2 163074612 163074612 G T FAP Missense_Mutation p.P216T 0.23 tolerated(0.05) benign(0.356) TCGA-44-8119-01 2 166764244 166764244 C A TTC21B Missense_Mutation p.A838S 0.20 tolerated(0.07) benign(0.088) TCGA-44-8119-01 2 168105002 168105002 C T XIRP2 Missense_Mutation p.P2367L 0.13 benign(0.258) TCGA-44-8119-01 2 179397182 179397182 C G TTN Missense_Mutation p.E34720D 0.16 TCGA-44-8119-01 2 179614153 179614153 C T TTN Intron 0.31 TCGA-44-8119-01 2 187626443 187626443 C A FAM171B Missense_Mutation p.D458E 0.55 tolerated(0.86) probably_damaging(0.992) TCGA-44-8119-01 2 196825490 196825490 T A DNAH7 Missense_Mutation p.Q795H 0.10 deleterious(0.02) benign(0.049) TCGA-44-8119-01 2 197208448 197208448 C A HECW2 Missense_Mutation p.R111S 0.42 deleterious(0) probably_damaging(0.992) TCGA-44-8119-01 2 20101556 20101556 G C TTC32 Missense_Mutation p.N20K 0.28 tolerated(0.94) benign(0.001) TCGA-44-8119-01 2 201997851 201997851 G A CFLAR Silent p.K127K 0.09 TCGA-44-8119-01 2 20838389 20838389 C T HS1BP3 Missense_Mutation p.G144R 0.57 deleterious(0.02) benign(0.056) TCGA-44-8119-01 2 211532907 211532907 C A CPS1 Intron 0.45 TCGA-44-8119-01 2 21234457 21234457 G T APOB Silent p.G1761G 0.45 TCGA-44-8119-01 2 217526631 217526631 G C IGFBP2 Missense_Mutation p.M241I 0.47 deleterious(0.04) benign(0.185) TCGA-44-8119-01 2 220071702 220071702 G T ZFAND2B 5'UTR 0.17 TCGA-44-8119-01 2 220092692 220092692 G A ATG9A Missense_Mutation p.P19S 0.14 deleterious(0.05) probably_damaging(0.998) TCGA-44-8119-01 2 220348588 220348588 G T SPEG Nonsense_Mutation p.E2135* 0.33 TCGA-44-8119-01 2 226446740 226446740 C A NYAP2 Missense_Mutation p.L203M 0.21 deleterious(0) probably_damaging(1) TCGA-44-8119-01 2 230701561 230701561 T C TRIP12 Intron 0.14 TCGA-44-8119-01 2 233244520 233244520 G T ALPP Silent p.S177S 0.21 TCGA-44-8119-01 2 233348785 233348785 C T ECEL1 Missense_Mutation p.A445T 0.23 tolerated(1) benign(0.11) TCGA-44-8119-01 2 234622156 234622156 G T UGT1A5 Missense_Mutation p.L173F 0.21 tolerated(0.1) possibly_damaging(0.776) TCGA-44-8119-01 2 237489673 237489673 G T ACKR3 Missense_Mutation p.A189S 0.29 tolerated(0.67) possibly_damaging(0.472) TCGA-44-8119-01 2 242350541 242350541 G A FARP2 Silent p.L168L 0.25 TCGA-44-8119-01 2 24299173 24299173 C T SF3B14 5'UTR 0.29 TCGA-44-8119-01 2 25967026 25967026 G A ASXL2 Missense_Mutation p.P727L 0.21 tolerated_low_confidence(0.1) benign(0.013) TCGA-44-8119-01 2 32475108 32475108 G T NLRC4 Missense_Mutation p.L609M 0.22 deleterious(0) probably_damaging(0.999) TCGA-44-8119-01 2 33500929 33500929 G T LTBP1 Silent p.G977G 0.57 TCGA-44-8119-01 2 33534521 33534521 G A LTBP1 Missense_Mutation p.D1168N 0.17 tolerated(0.18) benign(0.033) TCGA-44-8119-01 2 33952635 33952635 C T AC009499.1 Intron 0.33 TCGA-44-8119-01 2 44507927 44507927 C T SLC3A1 Missense_Mutation p.S168L 0.34 deleterious(0) probably_damaging(1) TCGA-44-8119-01 2 53978010 53978010 G T ASB3 Missense_Mutation p.Q124K 0.15 tolerated(0.19) benign(0.014) TCGA-44-8119-01 2 60689313 60689313 C A BCL11A Missense_Mutation p.G245V 0.21 deleterious(0) probably_damaging(0.999) TCGA-44-8119-01 2 64863723 64863723 C A SERTAD2 Nonsense_Mutation p.E95* 0.43 TCGA-44-8119-01 2 79314782 79314782 T A REG1B Intron 0.15 TCGA-44-8119-01 2 89986863 89986863 C A IGKV2D-29 Missense_Mutation p.S48R 0.58 deleterious(0.01) possibly_damaging(0.605) TCGA-44-8119-01 2 89987037 89987037 G T IGKV2D-29 Missense_Mutation p.E106D 0.75 tolerated(0.21) benign(0.034) TCGA-44-8119-01 2 97757243 97757243 C A FAHD2B Silent p.T67T 0.20 TCGA-44-8119-01 3 101044921 101044921 G C SENP7 Missense_Mutation p.P1007A 0.23 deleterious(0) probably_damaging(1) TCGA-44-8119-01 3 101484457 101484457 G C CEP97 3'UTR 0.25 TCGA-44-8119-01 3 108100364 108100364 A T MYH15 3'UTR 0.19 TCGA-44-8119-01 3 108391450 108391450 A G DZIP3 Missense_Mutation p.K846E 0.22 deleterious(0.05) probably_damaging(0.997) TCGA-44-8119-01 3 109027893 109027893 C A DPPA2 Missense_Mutation p.A126S 0.18 tolerated(0.17) benign(0.039) TCGA-44-8119-01 3 112299448 112299448 G T SLC35A5 Missense_Mutation p.V162L 0.24 deleterious(0.03) benign(0.362) TCGA-44-8119-01 3 112546461 112546461 A G CD200R1L Silent p.N61N 0.51 TCGA-44-8119-01 3 112648319 112648319 C A CD200R1 Missense_Mutation p.A80S 0.45 deleterious(0.01) possibly_damaging(0.644) TCGA-44-8119-01 3 112648323 112648323 T G CD200R1 Silent p.T78T 0.46 TCGA-44-8119-01 3 112999989 112999989 G A BOC Missense_Mutation p.C807Y 0.40 deleterious(0) probably_damaging(0.998) TCGA-44-8119-01 3 113212134 113212134 A C SPICE1 Silent p.P137P 0.43 TCGA-44-8119-01 3 119445024 119445024 G C MAATS1 Missense_Mutation p.G230A 0.30 deleterious(0) probably_damaging(0.999) TCGA-44-8119-01 3 121258345 121258345 C A POLQ Missense_Mutation p.C189F 0.40 deleterious(0) probably_damaging(1) TCGA-44-8119-01 3 122628926 122628926 G T SEMA5B 3'UTR 0.38 TCGA-44-8119-01 3 124415091 124415091 T A AC080008.1 3'Flank 0.37 TCGA-44-8119-01 3 124953171 124953171 C A ZNF148 Nonsense_Mutation p.E224* 0.14 TCGA-44-8119-01 3 128200101 128200101 T G GATA2 Missense_Mutation p.N402H 0.17 deleterious(0.03) benign(0.185) TCGA-44-8119-01 3 13364882 13364882 G C NUP210 Missense_Mutation p.I1565M 0.34 tolerated(0.21) benign(0.243) TCGA-44-8119-01 3 137843175 137843175 C A A4GNT Missense_Mutation p.R318S 0.21 tolerated(0.57) benign(0.004) TCGA-44-8119-01 3 137942540 137942540 A T ARMC8 Missense_Mutation p.T120S 0.31 tolerated(0.78) benign(0.075) TCGA-44-8119-01 3 146233781 146233781 C A PLSCR1 3'UTR 0.45 TCGA-44-8119-01 3 164735552 164735552 A T SI Missense_Mutation p.H1210Q 0.23 tolerated(0.16) probably_damaging(0.969) TCGA-44-8119-01 3 182988511 182988511 A G B3GNT5 Missense_Mutation p.T309A 0.27 tolerated(1) benign(0) TCGA-44-8119-01 3 183014896 183014896 G C MCF2L2 Missense_Mutation p.C455W 0.39 deleterious(0) probably_damaging(0.928) TCGA-44-8119-01 3 196033854 196033854 C A TCTEX1D2 Missense_Mutation p.V93L 0.12 deleterious(0.03) probably_damaging(0.986) TCGA-44-8119-01 3 196043063 196043063 C A TCTEX1D2 Silent p.V51V 0.30 TCGA-44-8119-01 3 21478635 21478635 C T ZNF385D Missense_Mutation p.S167N 0.22 tolerated(0.14) benign(0) TCGA-44-8119-01 3 36779653 36779653 C A DCLK3 Missense_Mutation p.M166I 0.54 tolerated(0.3) benign(0.001) TCGA-44-8119-01 3 36779654 36779654 A T DCLK3 Missense_Mutation p.M166K 0.53 deleterious(0.03) benign(0.047) TCGA-44-8119-01 3 38753830 38753830 G T SCN10A Missense_Mutation p.A1304E 0.19 deleterious(0) probably_damaging(0.933) TCGA-44-8119-01 3 4354588 4354588 C A SETMAR Missense_Mutation p.P55T 0.46 deleterious_low_confidence(0) possibly_damaging(0.841) TCGA-44-8119-01 3 44952524 44952524 A T TGM4 Missense_Mutation p.I561F 0.16 tolerated(0.07) benign(0.105) TCGA-44-8119-01 3 46062816 46062816 G T XCR1 Silent p.I208I 0.22 TCGA-44-8119-01 3 48628987 48628987 C T COL7A1 Missense_Mutation p.A516T 0.31 unknown(0) TCGA-44-8119-01 3 49141299 49141299 C A QARS Missense_Mutation p.E124D 0.17 tolerated(0.78) benign(0.074) TCGA-44-8119-01 3 49691536 49691536 A G BSN Missense_Mutation p.D1516G 0.41 unknown(0) TCGA-44-8119-01 3 49940564 49940564 G A MST1R Missense_Mutation p.P160L 0.42 deleterious(0) possibly_damaging(0.811) TCGA-44-8119-01 3 51440706 51440706 C T VPRBP Missense_Mutation p.A1017T 0.50 tolerated_low_confidence(0.38) unknown(0) TCGA-44-8119-01 3 53212521 53212521 G T PRKCD Missense_Mutation p.C28F 0.24 deleterious(0) probably_damaging(0.999) TCGA-44-8119-01 3 63542296 63542296 C A SYNPR Nonsense_Mutation p.S96* 0.33 TCGA-44-8119-01 3 75679970 75679970 G C MIR1324 RNA 0.08 TCGA-44-8119-01 3 77651554 77651554 T G ROBO2 Silent p.P1032P 0.16 TCGA-44-8119-01 3 93734018 93734018 C T STX19 Silent p.G32G 0.27 TCGA-44-8119-01 4 100137409 100137409 C T ADH6 Missense_Mutation p.C10Y 0.57 deleterious(0.01) probably_damaging(0.933) TCGA-44-8119-01 4 100510852 100510852 A G MTTP Missense_Mutation p.K149R 0.11 deleterious(0.01) probably_damaging(0.99) TCGA-44-8119-01 4 114274474 114274474 G T ANK2 Missense_Mutation p.R1567I 0.14 probably_damaging(0.994) TCGA-44-8119-01 4 114275247 114275247 C A ANK2 Missense_Mutation p.P1825T 0.37 benign(0.003) TCGA-44-8119-01 4 114276431 114276431 G T ANK2 Missense_Mutation p.M2219I 0.51 benign(0.373) TCGA-44-8119-01 4 114276896 114276896 C A ANK2 Silent p.A2374A 0.39 TCGA-44-8119-01 4 115585262 115585262 C A UGT8 Missense_Mutation p.L312M 0.62 deleterious(0.02) probably_damaging(0.998) TCGA-44-8119-01 4 115773888 115773888 T C NDST4 Silent p.Q603Q 0.13 TCGA-44-8119-01 4 115997680 115997680 G T NDST4 Missense_Mutation p.S171R 0.35 deleterious(0.02) benign(0.292) TCGA-44-8119-01 4 122754517 122754517 G C BBS7 Missense_Mutation p.F515L 0.26 deleterious(0) probably_damaging(0.992) TCGA-44-8119-01 4 126372237 126372237 T C FAT4 Missense_Mutation p.Y3356H 0.49 probably_damaging(0.934) TCGA-44-8119-01 4 1389286 1389286 G C CRIPAK Silent p.V329V 0.45 TCGA-44-8119-01 4 140624670 140624670 T A MGST2 Nonsense_Mutation p.Y97* 0.39 TCGA-44-8119-01 4 155507189 155507189 G T FGA Silent p.T464T 0.42 TCGA-44-8119-01 4 155507190 155507190 G T FGA Missense_Mutation p.T464N 0.42 deleterious(0) probably_damaging(0.98) TCGA-44-8119-01 4 156784802 156784802 C A ASIC5 Missense_Mutation p.G49W 0.46 deleterious(0) probably_damaging(1) TCGA-44-8119-01 4 164394815 164394815 C A TKTL2 Silent p.R24R 0.23 TCGA-44-8119-01 4 169589421 169589421 T A PALLD Missense_Mutation p.I330N 0.49 deleterious(0) benign(0.281) TCGA-44-8119-01 4 175414438 175414438 C T HPGD Missense_Mutation p.V176M 0.44 deleterious(0) probably_damaging(0.997) TCGA-44-8119-01 4 177046336 177046336 G - WDR17 Frame_Shift_Del p.D232Tfs*9 0.13 TCGA-44-8119-01 4 187195352 187195352 C G F11 Missense_Mutation p.C136W 0.58 deleterious(0) probably_damaging(1) TCGA-44-8119-01 4 2242155 2242155 A C HAUS3 Silent p.V173V 0.33 TCGA-44-8119-01 4 2835449 2835449 A T SH3BP2 Missense_Mutation p.E582V 0.59 tolerated_low_confidence(0.06) possibly_damaging(0.453) TCGA-44-8119-01 4 3447026 3447026 G T HGFAC Missense_Mutation p.V351L 0.40 tolerated(0.06) benign(0.069) TCGA-44-8119-01 4 38777232 38777232 C G TLR10 5'UTR 0.11 TCGA-44-8119-01 4 4393262 4393262 C - NSG1 Frame_Shift_Del p.Q65Kfs*83 0.35 TCGA-44-8119-01 4 46053535 46053535 G T GABRG1 Missense_Mutation p.A346E 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-44-8119-01 4 46314524 46314524 C T GABRA2 Silent p.L155L 0.12 TCGA-44-8119-01 4 46314560 46314560 A G GABRA2 Silent p.N143N 0.18 TCGA-44-8119-01 4 46930264 46930264 T A GABRA4 Missense_Mutation p.E548V 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.756) TCGA-44-8119-01 4 48139453 48139453 C A TEC Nonsense_Mutation p.E626* 0.07 TCGA-44-8119-01 4 48139455 48139455 C A TEC Missense_Mutation p.C625F 0.07 tolerated(0.05) benign(0.116) TCGA-44-8119-01 4 55155053 55155053 C G PDGFRA Missense_Mutation p.A921G 0.20 deleterious(0) possibly_damaging(0.885) TCGA-44-8119-01 4 55604743 55604743 C A KIT 3'UTR 0.13 TCGA-44-8119-01 4 70155469 70155469 A G UGT2B28 Silent p.L363L 0.35 TCGA-44-8119-01 4 70512723 70512728 TGAAAT - UGT2A1 In_Frame_Del p.N212_F213del 0.47 TCGA-44-8119-01 4 71497436 71497436 G A ENAM Missense_Mutation p.G35D 0.43 deleterious(0) probably_damaging(0.977) TCGA-44-8119-01 4 71698942 71698942 C A GRSF1 Missense_Mutation p.R188I 0.51 deleterious(0) probably_damaging(0.949) TCGA-44-8119-01 4 71698943 71698943 T A GRSF1 Nonsense_Mutation p.R188* 0.50 TCGA-44-8119-01 4 76447004 76447004 C T THAP6 Missense_Mutation p.T116I 0.52 tolerated(0.18) benign(0.002) TCGA-44-8119-01 4 76809462 76809462 A G PPEF2 Missense_Mutation p.V146A 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-44-8119-01 4 77816819 77816820 - C SOWAHB Frame_Shift_Ins p.K729Qfs*26 0.33 TCGA-44-8119-01 4 78870953 78870953 G T MRPL1 Missense_Mutation p.L260F 0.59 deleterious(0.01) probably_damaging(0.979) TCGA-44-8119-01 4 80246685 80246685 C T NAA11 Missense_Mutation p.R116Q 0.15 tolerated(0.08) possibly_damaging(0.473) TCGA-44-8119-01 4 83425804 83425804 C A TMEM150C Missense_Mutation p.G3W 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.615) TCGA-44-8119-01 4 88584289 88584289 C T DMP1 Silent p.D453D 0.15 TCGA-44-8119-01 4 90857782 90857782 G T MMRN1 Missense_Mutation p.C984F 0.45 tolerated(0.7) benign(0.004) TCGA-44-8119-01 4 96222865 96222865 G C UNC5C Missense_Mutation p.R128G 0.23 deleterious(0) probably_damaging(0.971) TCGA-44-8119-01 5 101795398 101795398 G T SLCO6A1 Missense_Mutation p.T328K 0.07 deleterious(0) probably_damaging(0.971) TCGA-44-8119-01 5 114916522 114916522 T A TMED7-TICAM2 Missense_Mutation p.L313F 0.62 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-44-8119-01 5 133945325 133945325 C G SAR1B Missense_Mutation p.G95A 0.16 tolerated(0.65) benign(0.06) TCGA-44-8119-01 5 137589497 137589497 A T GFRA3 Missense_Mutation p.C328S 0.67 deleterious(0) probably_damaging(0.979) TCGA-44-8119-01 5 140208592 140208592 G C PCDHA6 Missense_Mutation p.G306R 0.14 deleterious_low_confidence(0.04) possibly_damaging(0.691) TCGA-44-8119-01 5 140476465 140476465 C A PCDHB2 Silent p.A697A 0.30 TCGA-44-8119-01 5 140552827 140552827 G A PCDHB7 Silent p.E137E 0.18 TCGA-44-8119-01 5 140557692 140557692 C T PCDHB8 Missense_Mutation p.A26V 0.12 tolerated_low_confidence(0.19) benign(0.001) TCGA-44-8119-01 5 140563949 140563949 G T PCDHB16 Missense_Mutation p.Q605H 0.72 deleterious_low_confidence(0.01) possibly_damaging(0.89) TCGA-44-8119-01 5 140589097 140589097 G T PCDHB12 Silent p.P206P 0.44 TCGA-44-8119-01 5 140711005 140711005 C A PCDHGA1 Missense_Mutation p.P252T 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.507) TCGA-44-8119-01 5 140712130 140712130 C A PCDHGA1 Missense_Mutation p.R627S 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.746) TCGA-44-8119-01 5 140725017 140725017 T A PCDHGA3 Missense_Mutation p.S473T 0.16 deleterious_low_confidence(0.04) benign(0.274) TCGA-44-8119-01 5 140767987 140767987 C T PCDHGB4 Missense_Mutation p.S179L 0.13 deleterious(0.01) benign(0.208) TCGA-44-8119-01 5 140799152 140799152 G C PCDHGB7 Missense_Mutation p.D576H 0.21 deleterious(0) possibly_damaging(0.906) TCGA-44-8119-01 5 142779998 142779998 G A NR3C1 Missense_Mutation p.P136L 0.19 tolerated_low_confidence(0.09) benign(0.099) TCGA-44-8119-01 5 145393375 145393375 C G SH3RF2 Missense_Mutation p.N270K 0.18 tolerated(0.46) benign(0.028) TCGA-44-8119-01 5 145719335 145719335 C T POU4F3 Silent p.L115L 0.18 TCGA-44-8119-01 5 148680744 148680744 C A AFAP1L1 Missense_Mutation p.P93H 0.50 tolerated(0.1) benign(0.001) TCGA-44-8119-01 5 149583540 149583540 C A SLC6A7 Missense_Mutation p.A424E 0.19 tolerated(0.27) possibly_damaging(0.525) TCGA-44-8119-01 5 151208624 151208624 G A GLRA1 Missense_Mutation p.S306F 0.11 deleterious(0) probably_damaging(0.998) TCGA-44-8119-01 5 153429541 153429541 A G MFAP3 Missense_Mutation p.N87D 0.68 deleterious(0.01) probably_damaging(0.998) TCGA-44-8119-01 5 154394831 154394831 A T KIF4B Missense_Mutation p.Q471L 0.26 tolerated(0.09) benign(0.005) TCGA-44-8119-01 5 156929856 156929856 G T ADAM19 Missense_Mutation p.N421K 0.48 deleterious(0.02) possibly_damaging(0.576) TCGA-44-8119-01 5 157078150 157078150 C T SOX30 Missense_Mutation p.V313I 0.13 deleterious(0.04) possibly_damaging(0.685) TCGA-44-8119-01 5 171766667 171766667 C A SH3PXD2B Missense_Mutation p.G481V 0.24 tolerated(0.08) benign(0.009) TCGA-44-8119-01 5 177674554 177674554 C A COL23A1 Splice_Site p.X424_splice 0.21 TCGA-44-8119-01 5 178505818 178505818 G T ZNF354C Nonsense_Mutation p.E129* 0.33 TCGA-44-8119-01 5 33576465 33576465 G T ADAMTS12 Silent p.P1222P 0.52 TCGA-44-8119-01 5 35871288 35871288 C A IL7R Silent p.R170R 0.08 TCGA-44-8119-01 5 36629653 36629653 C A SLC1A3 Missense_Mutation p.L95M 0.57 tolerated(0.12) probably_damaging(0.984) TCGA-44-8119-01 5 37167229 37167229 T G C5orf42 Missense_Mutation p.Q2440H 0.15 tolerated(0.06) benign(0.045) TCGA-44-8119-01 5 40853053 40853053 G C CARD6 Missense_Mutation p.W540S 0.54 deleterious(0) benign(0.25) TCGA-44-8119-01 5 40937664 40937664 C A C7 Missense_Mutation p.L147I 0.63 tolerated(0.26) benign(0.082) TCGA-44-8119-01 5 41201730 41201730 C T C6 Missense_Mutation p.R77K 0.17 tolerated(0.26) benign(0) TCGA-44-8119-01 5 43644344 43644344 G C NNT Missense_Mutation p.E339Q 0.56 tolerated(0.16) possibly_damaging(0.609) TCGA-44-8119-01 5 5466469 5466469 A G KIAA0947 Missense_Mutation p.H1972R 0.11 tolerated(0.26) benign(0.05) TCGA-44-8119-01 5 71490031 71490031 C A MAP1B Silent p.L283L 0.65 TCGA-44-8119-01 5 72419514 72419514 A C TMEM171 Missense_Mutation p.E105A 0.06 tolerated(0.05) probably_damaging(0.939) TCGA-44-8119-01 5 82779354 82779354 A G VCAN Missense_Mutation p.K6R 0.45 deleterious(0.05) benign(0.009) TCGA-44-8119-01 5 89979668 89979668 G T GPR98 Missense_Mutation p.G1977V 0.15 probably_damaging(0.999) TCGA-44-8119-01 5 93111899 93111899 C A FAM172A Missense_Mutation p.E358D 0.24 tolerated(0.59) benign(0.004) TCGA-44-8119-01 6 100838324 100838324 G T SIM1 Missense_Mutation p.H738Q 0.17 tolerated_low_confidence(0.4) benign(0.005) TCGA-44-8119-01 6 105224973 105224973 C G HACE1 Missense_Mutation p.R564T 0.44 tolerated(0.09) benign(0.221) TCGA-44-8119-01 6 109477009 109477009 G C CEP57L1 Missense_Mutation p.E225Q 0.33 deleterious(0.01) probably_damaging(0.974) TCGA-44-8119-01 6 110714464 110714464 G T DDO Silent p.V208V 0.51 TCGA-44-8119-01 6 110729586 110729586 T A DDO Missense_Mutation p.I106F 0.56 tolerated(0.74) probably_damaging(0.962) TCGA-44-8119-01 6 112457324 112457324 C A LAMA4 Splice_Site p.X1138_splice 0.14 TCGA-44-8119-01 6 117658334 117658334 C A ROS1 Splice_Site p.X1750_splice 0.69 TCGA-44-8119-01 6 128134515 128134515 G T THEMIS Missense_Mutation p.A424E 0.11 tolerated(0.16) benign(0.406) TCGA-44-8119-01 6 128135074 128135074 G T THEMIS Silent p.R238R 0.20 TCGA-44-8119-01 6 129513959 129513959 C A LAMA2 Missense_Mutation p.S581R 0.59 tolerated(0.54) benign(0.002) TCGA-44-8119-01 6 131211473 131211473 G A EPB41L2 Missense_Mutation p.R541C 0.13 deleterious(0) probably_damaging(0.999) TCGA-44-8119-01 6 137528209 137528209 T A IFNGR1 Missense_Mutation p.T31S 0.08 tolerated(0.21) benign(0.013) TCGA-44-8119-01 6 139563821 139563821 G T TXLNB Missense_Mutation p.P633T 0.15 deleterious_low_confidence(0.02) benign(0.162) TCGA-44-8119-01 6 139564198 139564198 A C TXLNB Missense_Mutation p.F507C 0.26 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-44-8119-01 6 146351224 146351224 G T GRM1 Missense_Mutation p.D191Y 0.37 deleterious(0) probably_damaging(0.997) TCGA-44-8119-01 6 146720268 146720268 C T GRM1 Missense_Mutation p.P698L 0.46 deleterious(0.02) probably_damaging(0.967) TCGA-44-8119-01 6 148865127 148865127 G T SASH1 Missense_Mutation p.D841Y 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.51) TCGA-44-8119-01 6 152382259 152382259 G T ESR1 Nonsense_Mutation p.G457* 0.45 TCGA-44-8119-01 6 154481022 154481022 C A IPCEF1 Missense_Mutation p.D420Y 0.15 deleterious_low_confidence(0.05) possibly_damaging(0.652) TCGA-44-8119-01 6 168272913 168272913 C A MLLT4 Missense_Mutation p.P145H 0.18 tolerated(0.11) probably_damaging(1) TCGA-44-8119-01 6 169632131 169632131 C A THBS2 Missense_Mutation p.G699C 0.16 deleterious(0.02) probably_damaging(1) TCGA-44-8119-01 6 21000597 21000597 A G CDKAL1 Missense_Mutation p.K350R 0.26 tolerated(0.63) benign(0.012) TCGA-44-8119-01 6 26428208 26428208 G T BTN2A3P RNA 0.74 TCGA-44-8119-01 6 29054162 29054162 G A OR2B3 Silent p.L288L 0.60 TCGA-44-8119-01 6 29598363 29598363 C A GABBR1 Missense_Mutation p.G116V 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.825) TCGA-44-8119-01 6 29795918 29795918 G T HLA-G Missense_Mutation p.Q56H 0.70 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-8119-01 6 33658831 33658831 C A ITPR3 Missense_Mutation p.F2390L 0.73 deleterious(0.03) benign(0.062) TCGA-44-8119-01 6 43019123 43019123 C T CUL7 Silent p.A356A 0.10 TCGA-44-8119-01 6 47680139 47680139 C A GPR115 Missense_Mutation p.P116H 0.70 deleterious(0.01) probably_damaging(0.917) TCGA-44-8119-01 6 49419405 49419405 C G MUT Missense_Mutation p.R369P 0.68 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-44-8119-01 6 52009162 52009162 C T MIR206 RNA 0.82 TCGA-44-8119-01 6 55142278 55142278 C A HCRTR2 Missense_Mutation p.A288D 0.58 tolerated(0.27) benign(0.217) TCGA-44-8119-01 6 56391314 56391314 C A DST Nonsense_Mutation p.E3369* 0.31 TCGA-44-8119-01 6 62442660 62442660 C T KHDRBS2 Missense_Mutation p.D274N 0.15 deleterious(0.03) benign(0.057) TCGA-44-8119-01 6 62887165 62887165 C G KHDRBS2 Missense_Mutation p.K48N 0.47 tolerated(0.11) probably_damaging(0.991) TCGA-44-8119-01 6 64421154 64421154 A G PHF3 Missense_Mutation p.Y1298C 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-44-8119-01 6 70071382 70071382 C T BAI3 Missense_Mutation p.T1406M 0.49 deleterious(0) benign(0.386) TCGA-44-8119-01 6 70647957 70647957 G C COL19A1 Missense_Mutation p.G301R 0.40 deleterious(0.02) unknown(0) TCGA-44-8119-01 6 72011775 72011775 A G OGFRL1 3'UTR 0.07 TCGA-44-8119-01 6 74472503 74472503 A C CD109 Missense_Mutation p.M299L 0.56 tolerated(0.54) benign(0.001) TCGA-44-8119-01 6 8430378 8430378 G A SLC35B3 Nonsense_Mutation p.Q6* 0.15 TCGA-44-8119-01 6 90458990 90458990 C T MDN1 Silent p.L1238L 0.22 TCGA-44-8119-01 6 90642274 90642274 C A BACH2 Silent p.G793G 0.18 TCGA-44-8119-01 6 97051597 97051597 A T FHL5 Silent p.V36V 0.49 TCGA-44-8119-01 7 100349719 100349719 C T ZAN Missense_Mutation p.P664L 0.61 probably_damaging(0.958) TCGA-44-8119-01 7 100350425 100350425 C A ZAN Silent p.L899L 0.25 TCGA-44-8119-01 7 100682119 100682119 C A MUC17 Silent p.G2474G 0.63 TCGA-44-8119-01 7 106523545 106523545 G A PIK3CG Silent p.T899T 0.78 TCGA-44-8119-01 7 107718671 107718671 A G LAMB4 Missense_Mutation p.S660P 0.24 tolerated(0.21) benign(0.004) TCGA-44-8119-01 7 107818553 107818553 G A NRCAM Silent p.P952P 0.83 TCGA-44-8119-01 7 127251720 127251720 C A PAX4 Missense_Mutation p.G253V 0.47 deleterious(0.03) possibly_damaging(0.736) TCGA-44-8119-01 7 137686423 137686423 C A CREB3L2 Missense_Mutation p.G10V 0.44 tolerated_low_confidence(0.14) benign(0.029) TCGA-44-8119-01 7 142020871 142020871 A T TRBV5-1 5'UTR 0.47 TCGA-44-8119-01 7 142104297 142104297 T - TRBV6-9 Frame_Shift_Del p.D57Tfs*6 0.13 TCGA-44-8119-01 7 142206721 142206721 G T TRBV10-2 Missense_Mutation p.T45N 0.43 tolerated(0.39) benign(0.124) TCGA-44-8119-01 7 142458434 142458434 G A PRSS1 Silent p.K23K 0.04 TCGA-44-8119-01 7 142562268 142562268 G - EPHB6 Frame_Shift_Del p.R237Hfs*37 0.28 TCGA-44-8119-01 7 142566824 142566824 G A EPHB6 Missense_Mutation p.R794H 0.32 deleterious(0) probably_damaging(0.999) TCGA-44-8119-01 7 14378224 14378224 G A DGKB Nonsense_Mutation p.R681* 0.29 TCGA-44-8119-01 7 148876132 148876132 C T ZNF398 Nonsense_Mutation p.Q390* 0.39 TCGA-44-8119-01 7 149191459 149191459 C A ZNF746 Missense_Mutation p.V54L 0.30 tolerated(0.06) benign(0.001) TCGA-44-8119-01 7 150417635 150417636 - G GIMAP1 Frame_Shift_Ins p.R184Pfs*6 0.34 TCGA-44-8119-01 7 150878409 150878409 G T ASB10 Missense_Mutation p.P241T 0.41 tolerated(0.23) benign(0.101) TCGA-44-8119-01 7 15425151 15425151 A T AGMO Missense_Mutation p.S332T 0.11 tolerated(0.17) benign(0.309) TCGA-44-8119-01 7 154561170 154561170 T C DPP6 Silent p.D309D 0.10 TCGA-44-8119-01 7 157985025 157985025 G T PTPRN2 Silent p.P181P 0.35 TCGA-44-8119-01 7 21469527 21469527 T C SP4 Silent p.G248G 0.29 TCGA-44-8119-01 7 23296588 23296588 G A GPNMB Missense_Mutation p.G149S 0.24 tolerated(1) benign(0.002) TCGA-44-8119-01 7 24874121 24874121 C T OSBPL3 Missense_Mutation p.S577N 0.18 tolerated(0.09) benign(0.001) TCGA-44-8119-01 7 31692297 31692297 G T CCDC129 Missense_Mutation p.G1023C 0.17 deleterious(0) probably_damaging(0.989) TCGA-44-8119-01 7 40228118 40228118 G T SUGCT Missense_Mutation p.W91L 0.17 deleterious(0.01) probably_damaging(1) TCGA-44-8119-01 7 42005748 42005748 C G GLI3 Missense_Mutation p.A975P 0.15 tolerated(0.37) benign(0.001) TCGA-44-8119-01 7 48314914 48314914 G - ABCA13 Frame_Shift_Del p.V1886Wfs*4 0.35 TCGA-44-8119-01 7 62752726 62752726 C G ZNF733P RNA 0.60 TCGA-44-8119-01 7 64167095 64167095 G A ZNF107 Missense_Mutation p.G138E 0.27 deleterious(0.02) possibly_damaging(0.756) TCGA-44-8119-01 7 7622959 7622959 G T MIOS Missense_Mutation p.R535L 0.67 deleterious(0) possibly_damaging(0.567) TCGA-44-8119-01 7 80418809 80418809 G A SEMA3C Silent p.T389T 0.79 TCGA-44-8119-01 7 82474677 82474677 T A PCLO Silent p.S4652S 0.71 TCGA-44-8119-01 7 89749170 89749170 T C RP5-1121E10.2 Intron 0.70 TCGA-44-8119-01 7 99578416 99578416 C A AZGP1 5'Flank 0.42 TCGA-44-8119-01 8 100974640 100974640 A T RGS22 3'UTR 0.73 TCGA-44-8119-01 8 10388993 10388993 C G PRSS55 Missense_Mutation p.T179R 0.53 tolerated(0.35) benign(0.03) TCGA-44-8119-01 8 113267588 113267588 A G CSMD3 Missense_Mutation p.S3311P 0.45 deleterious(0.01) probably_damaging(0.917) TCGA-44-8119-01 8 113303848 113303848 G A CSMD3 Silent p.Y2955Y 0.09 TCGA-44-8119-01 8 119391877 119391877 G C SAMD12 Missense_Mutation p.L129V 0.65 tolerated(0.29) benign(0.079) TCGA-44-8119-01 8 12586805 12586805 C A LONRF1 Missense_Mutation p.M575I 0.52 deleterious(0.02) benign(0.291) TCGA-44-8119-01 8 133885450 133885450 G T TG Missense_Mutation p.V208F 0.54 deleterious(0) possibly_damaging(0.793) TCGA-44-8119-01 8 133899640 133899651 AGCCAGCCTGCT - TG In_Frame_Del p.S675_A678del 0.10 TCGA-44-8119-01 8 139895398 139895398 C A COL22A1 Silent p.G6G 0.87 TCGA-44-8119-01 8 143846488 143846488 C T LYNX1 Silent p.L75L 0.09 TCGA-44-8119-01 8 144297272 144297272 G T GPIHBP1 Missense_Mutation p.R145L 0.66 deleterious(0.04) benign(0.021) TCGA-44-8119-01 8 145623213 145623213 C T CPSF1 Missense_Mutation p.G677S 0.12 tolerated(0.28) benign(0.002) TCGA-44-8119-01 8 145947275 145947275 C A ZNF251 Silent p.G590G 0.14 TCGA-44-8119-01 8 18257911 18257912 - G NAT2 Frame_Shift_Ins p.P134Afs*44 0.36 TCGA-44-8119-01 8 20110300 20110300 T C LZTS1 Missense_Mutation p.Q381R 0.39 deleterious(0.02) possibly_damaging(0.864) TCGA-44-8119-01 8 22033679 22033679 A T BMP1 Missense_Mutation p.S96C 0.43 deleterious(0.03) benign(0.002) TCGA-44-8119-01 8 2949118 2949118 G A CSMD1 Missense_Mutation p.T2402I 0.22 probably_damaging(0.999) TCGA-44-8119-01 8 3474240 3474240 G A CSMD1 Silent p.S363S 0.19 TCGA-44-8119-01 8 38835529 38835529 G T HTRA4 Missense_Mutation p.V277L 0.39 deleterious(0) probably_damaging(0.996) TCGA-44-8119-01 8 42025240 42025240 G T AP3M2 Silent p.G356G 0.28 TCGA-44-8119-01 8 53084435 53084435 C A ST18 Missense_Mutation p.R329M 0.17 deleterious(0.03) benign(0.08) TCGA-44-8119-01 8 62430179 62430179 C T ASPH Silent p.P678P 0.09 TCGA-44-8119-01 8 72754799 72754799 G C MSC 3'UTR 0.60 TCGA-44-8119-01 8 72756310 72756310 T C MSC Missense_Mutation p.E35G 0.15 tolerated(0.33) benign(0.039) TCGA-44-8119-01 8 73849929 73849929 C A KCNB2 Missense_Mutation p.P780H 0.24 deleterious_low_confidence(0.01) benign(0.086) TCGA-44-8119-01 8 77620137 77620137 A T ZFHX4 Missense_Mutation p.S983C 0.13 benign(0.04) TCGA-44-8119-01 8 81412270 81412270 G T ZBTB10 Missense_Mutation p.R505L 0.69 deleterious(0.01) benign(0.246) TCGA-44-8119-01 8 87060692 87060693 - A PSKH2 Frame_Shift_Ins p.*386L 0.41 TCGA-44-8119-01 8 97318750 97318750 C A PTDSS1 Missense_Mutation p.L325I 0.07 tolerated(0.59) possibly_damaging(0.744) TCGA-44-8119-01 8 99441160 99441160 T A KCNS2 Missense_Mutation p.L318Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-44-8119-01 9 101706324 101706324 G T COL15A1 5'UTR 0.59 TCGA-44-8119-01 9 113341783 113341783 A T SVEP1 Missense_Mutation p.L14H 0.38 probably_damaging(0.959) TCGA-44-8119-01 9 113341824 113341824 C A SVEP1 5'UTR 0.33 TCGA-44-8119-01 9 113496625 113496625 C A MUSK Silent p.P241P 0.45 TCGA-44-8119-01 9 118949639 118949639 A G PAPPA Missense_Mutation p.M208V 0.15 deleterious(0.05) benign(0.284) TCGA-44-8119-01 9 119903685 119903685 G T ASTN2 Intron 0.29 TCGA-44-8119-01 9 125273176 125273176 G T OR1J2 Silent p.L32L 0.40 TCGA-44-8119-01 9 125282274 125282274 G C OR1J4 Silent p.L285L 0.16 TCGA-44-8119-01 9 126125301 126125301 C A CRB2 Silent p.P84P 0.36 TCGA-44-8119-01 9 126125467 126125467 G T CRB2 Missense_Mutation p.G140C 0.26 deleterious(0) unknown(0) TCGA-44-8119-01 9 127167675 127167675 C A PSMB7 Silent p.G144G 0.42 TCGA-44-8119-01 9 131025343 131025346 TCTC - GOLGA2 Frame_Shift_Del p.R293Tfs*17 0.14 TCGA-44-8119-01 9 132484658 132484658 C A PRRX2 3'UTR 0.24 TCGA-44-8119-01 9 133553975 133553975 G T PRDM12 Silent p.L210L 0.31 TCGA-44-8119-01 9 135765316 135765316 G C C9orf9 Intron 0.30 TCGA-44-8119-01 9 136226896 136226896 G C SURF2 Missense_Mutation p.E136D 0.29 benign(0.022) TCGA-44-8119-01 9 140372490 140372490 C A PNPLA7 Missense_Mutation p.A960S 0.19 deleterious(0) probably_damaging(0.983) TCGA-44-8119-01 9 140372491 140372491 T G PNPLA7 Silent p.G959G 0.14 TCGA-44-8119-01 9 14748521 14748521 G C FREM1 Missense_Mutation p.L1892V 0.29 tolerated(0.14) benign(0.018) TCGA-44-8119-01 9 14776138 14776138 C A FREM1 Silent p.V1502V 0.38 TCGA-44-8119-01 9 2719087 2719087 T A KCNV2 Missense_Mutation p.W450R 0.18 deleterious(0) probably_damaging(0.996) TCGA-44-8119-01 9 32635223 32635223 C A TAF1L Nonsense_Mutation p.E119* 0.30 TCGA-44-8119-01 9 39887527 39887527 G T SPATA31A2 Missense_Mutation p.G172C 0.24 deleterious(0) probably_damaging(0.984) TCGA-44-8119-01 9 6805754 6805754 G T KDM4C Missense_Mutation p.R100S 0.34 deleterious(0) benign(0.13) TCGA-44-8119-01 9 69238276 69238276 C A CBWD6 Missense_Mutation p.D206Y 0.09 deleterious(0) probably_damaging(1) TCGA-44-8119-01 9 8319891 8319891 T A PTPRD Silent p.V1870V 0.22 TCGA-44-8119-01 9 86383855 86383855 C T GKAP1 Missense_Mutation p.D206N 0.12 tolerated(0.17) possibly_damaging(0.9) TCGA-44-8119-01 9 91652958 91652958 T C SHC3 Missense_Mutation p.M536V 0.29 deleterious(0) possibly_damaging(0.588) TCGA-44-8119-01 9 91996117 91996117 C A SEMA4D Missense_Mutation p.A531S 0.42 tolerated(0.88) benign(0.01) TCGA-44-8119-01 9 99083525 99083525 T C SLC35D2 Silent p.%3D 0.55 TCGA-44-8119-01 X 100505950 100505950 G T DRP2 Missense_Mutation p.W581C 0.83 deleterious(0) probably_damaging(1) TCGA-44-8119-01 X 101857295 101857295 G T ARMCX5 Nonsense_Mutation p.E76* 0.77 TCGA-44-8119-01 X 103498980 103498980 G T ESX1 Missense_Mutation p.P121T 0.71 deleterious(0.02) possibly_damaging(0.908) TCGA-44-8119-01 X 107841986 107841986 G T COL4A5 Missense_Mutation p.G612C 0.83 unknown(0) TCGA-44-8119-01 X 119293090 119293090 C A RHOXF2 Silent p.A83A 0.77 TCGA-44-8119-01 X 144905763 144905763 G T SLITRK2 Missense_Mutation p.S607I 0.87 tolerated(0.19) benign(0.01) TCGA-44-8119-01 X 153131205 153131205 C A L1CAM Missense_Mutation p.R834L 0.87 tolerated(0.33) benign(0.003) TCGA-44-8119-01 X 153135082 153135082 C T L1CAM Missense_Mutation p.G387D 0.54 tolerated(0.12) benign(0.434) TCGA-44-8119-01 X 30269325 30269325 G T MAGEB1 Missense_Mutation p.G239W 0.38 deleterious(0) probably_damaging(1) TCGA-44-8119-01 X 41390395 41390395 T G CASK Missense_Mutation p.Q790H 0.09 deleterious(0.01) possibly_damaging(0.484) TCGA-44-8119-01 X 47426517 47426517 A T ARAF Missense_Mutation p.D287V 0.80 deleterious(0.03) benign(0.014) TCGA-44-8119-01 X 63445331 63445331 C A ASB12 Missense_Mutation p.R67M 0.85 deleterious(0) probably_damaging(0.998) TCGA-44-8119-01 X 65420494 65420494 G T HEPH Missense_Mutation p.M713I 0.84 deleterious(0.05) benign(0.002) TCGA-44-8119-01 X 69283033 69283033 T C OTUD6A Missense_Mutation p.L220P 0.24 deleterious(0) probably_damaging(0.996) TCGA-44-8119-01 X 70683692 70683692 G A TAF1 Silent p.E1826E 0.23 TCGA-44-8119-01 X 73071665 73071665 T A XIST RNA 0.80 TCGA-44-8119-01 X 79951407 79951407 C A BRWD3 Missense_Mutation p.G1051C 0.85 tolerated(0.09) possibly_damaging(0.57) TCGA-44-8119-01 X 79951409 79951409 A T BRWD3 Missense_Mutation p.I1050N 0.86 tolerated(0.5) benign(0.008) TCGA-44-8119-01 X 84586049 84586049 G C POF1B Missense_Mutation p.P254A 0.76 tolerated(0.4) probably_damaging(0.999) TCGA-44-8119-01 X 88009278 88009278 A G CPXCR1 Missense_Mutation p.Y288C 0.87 deleterious(0.01) benign(0.064) TCGA-44-8120-01 10 104849450 104849450 C T NT5C2 Silent p.E555E 0.24 TCGA-44-8120-01 10 105891157 105891157 G C WDR96 Missense_Mutation p.A1588G 0.32 tolerated(0.25) benign(0.003) TCGA-44-8120-01 10 106075442 106075442 A T ITPRIP Missense_Mutation p.L123Q 0.25 tolerated(0.16) possibly_damaging(0.83) TCGA-44-8120-01 10 108339200 108339200 C A SORCS1 Nonsense_Mutation p.G1100* 0.19 TCGA-44-8120-01 10 113920501 113920501 C A GPAM Silent p.L540L 0.22 TCGA-44-8120-01 10 123846146 123846146 G T TACC2 Missense_Mutation p.M1377I 0.30 benign(0.081) TCGA-44-8120-01 10 124457646 124457646 G T C10orf120 Missense_Mutation p.A204E 0.38 tolerated(0.19) benign(0.054) TCGA-44-8120-01 10 125447488 125447488 G T GPR26 Missense_Mutation p.G276W 0.15 deleterious(0) probably_damaging(1) TCGA-44-8120-01 10 126714718 126714718 C G CTBP2 Silent p.P537P 0.15 TCGA-44-8120-01 10 13169748 13169748 G A OPTN Missense_Mutation p.E416K 0.22 tolerated(0.24) benign(0.371) TCGA-44-8120-01 10 134660807 134660807 C G TTC40 Missense_Mutation p.G1991R 0.30 tolerated(0.36) benign(0.002) TCGA-44-8120-01 10 135002080 135002080 G T KNDC1 Missense_Mutation p.R455L 0.23 deleterious(0) benign(0.216) TCGA-44-8120-01 10 135113540 135113540 C A TUBGCP2 Missense_Mutation p.R76S 0.28 deleterious(0.03) probably_damaging(0.987) TCGA-44-8120-01 10 135193660 135193660 G T PAOX Silent p.V113V 0.23 TCGA-44-8120-01 10 13628984 13628984 G C PRPF18 5'UTR 0.38 TCGA-44-8120-01 10 15256232 15256232 G A FAM171A1 Missense_Mutation p.T452M 0.26 deleterious(0.02) probably_damaging(0.976) TCGA-44-8120-01 10 18292278 18292278 G T SLC39A12 Missense_Mutation p.L646F 0.19 deleterious(0) probably_damaging(1) TCGA-44-8120-01 10 22676803 22676803 G T SPAG6 Missense_Mutation p.A244S 0.20 deleterious(0.02) benign(0.185) TCGA-44-8120-01 10 23607779 23607779 T A C10orf67 3'UTR 0.19 TCGA-44-8120-01 10 26414399 26414400 GA - MYO3A Frame_Shift_Del p.E660Nfs*20 0.20 TCGA-44-8120-01 10 26505809 26505809 G T GAD2 Missense_Mutation p.G24V 0.22 deleterious_low_confidence(0.02) benign(0.104) TCGA-44-8120-01 10 27702789 27702789 C A PTCHD3 Missense_Mutation p.G131W 0.13 deleterious(0) probably_damaging(1) TCGA-44-8120-01 10 30336548 30336548 T C KIAA1462 Missense_Mutation p.H65R 0.14 tolerated(0.42) benign(0.013) TCGA-44-8120-01 10 45499041 45499041 G T ZNF22 Missense_Mutation p.K75N 0.35 deleterious(0) probably_damaging(0.998) TCGA-44-8120-01 10 45799375 45799375 C A OR13A1 Missense_Mutation p.V166L 0.14 deleterious(0.01) possibly_damaging(0.519) TCGA-44-8120-01 10 468941 468941 C A DIP2C Missense_Mutation p.V143L 0.25 tolerated(1) benign(0) TCGA-44-8120-01 10 50272776 50272776 G C VSTM4 Missense_Mutation p.H214D 0.25 deleterious(0.01) benign(0.363) TCGA-44-8120-01 10 54050034 54050034 C A PRKG1 Missense_Mutation p.P649H 0.26 deleterious(0.01) probably_damaging(0.986) TCGA-44-8120-01 10 6063594 6063594 C A IL2RA Missense_Mutation p.V144L 0.25 tolerated(0.07) probably_damaging(0.937) TCGA-44-8120-01 10 72493775 72493775 G T ADAMTS14 Missense_Mutation p.R451L 0.16 deleterious(0.04) possibly_damaging(0.613) TCGA-44-8120-01 10 73048323 73048323 A T UNC5B Splice_Site p.X301_splice 0.28 TCGA-44-8120-01 10 73553235 73553235 C A CDH23 5'Flank 0.29 TCGA-44-8120-01 10 78316966 78316966 G C C10orf11 Splice_Site p.X173_splice 0.14 TCGA-44-8120-01 10 84744946 84744946 A T NRG3 Missense_Mutation p.E559V 0.20 deleterious(0.01) benign(0.234) TCGA-44-8120-01 10 85955286 85955286 G C CDHR1 Missense_Mutation p.G31A 0.14 deleterious(0) probably_damaging(0.998) TCGA-44-8120-01 10 88451735 88451735 G C LDB3 Missense_Mutation p.D326H 0.22 tolerated(0.14) possibly_damaging(0.823) TCGA-44-8120-01 10 88992612 88992612 C A NUTM2A Missense_Mutation p.T535K 0.21 tolerated(0.09) benign(0.047) TCGA-44-8120-01 10 91514362 91514362 A G KIF20B Missense_Mutation p.I1439V 0.27 tolerated(0.48) benign(0.003) TCGA-44-8120-01 10 92679983 92679983 G T ANKRD1 Silent p.A50A 0.25 TCGA-44-8120-01 10 93713629 93713629 A T BTAF1 Missense_Mutation p.S234C 0.27 tolerated(0.09) benign(0.027) TCGA-44-8120-01 10 97583068 97583068 G C ENTPD1 Missense_Mutation p.A43P 0.18 deleterious(0) probably_damaging(0.979) TCGA-44-8120-01 10 98311022 98311022 C G TM9SF3 Missense_Mutation p.M313I 0.26 tolerated(1) benign(0) TCGA-44-8120-01 11 107578574 107578574 G A SLN Missense_Mutation p.S28F 0.29 deleterious_low_confidence(0) possibly_damaging(0.788) TCGA-44-8120-01 11 113264440 113264440 G T ANKK1 Silent p.L141L 0.21 TCGA-44-8120-01 11 114453180 114453180 G T NXPE4 Silent p.G220G 0.21 TCGA-44-8120-01 11 116691962 116691962 G T APOA4 Missense_Mutation p.A271D 0.24 deleterious(0) probably_damaging(0.94) TCGA-44-8120-01 11 118352634 118352634 G T KMT2A Missense_Mutation p.G1280V 0.24 benign(0.002) TCGA-44-8120-01 11 119212268 119212268 G T MFRP Missense_Mutation p.A577D 0.15 tolerated(0.1) possibly_damaging(0.886) TCGA-44-8120-01 11 120732789 120732789 G T GRIK4 Missense_Mutation p.W289L 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-44-8120-01 11 122795677 122795677 G T C11orf63 Missense_Mutation p.D313Y 0.22 deleterious(0) probably_damaging(0.939) TCGA-44-8120-01 11 123810870 123810870 C T OR4D5 Nonsense_Mutation p.Q183* 0.19 TCGA-44-8120-01 11 123908819 123908819 G C OR10G7 Missense_Mutation p.A297G 0.29 deleterious(0.01) possibly_damaging(0.649) TCGA-44-8120-01 11 124189659 124189659 C A OR8D2 Missense_Mutation p.M145I 0.22 tolerated(0.29) benign(0.033) TCGA-44-8120-01 11 124743272 124743272 T G ROBO3 Missense_Mutation p.W535G 0.32 tolerated(0.23) probably_damaging(0.999) TCGA-44-8120-01 11 128781306 128781306 C T KCNJ5 Silent p.G46G 0.19 TCGA-44-8120-01 11 134054825 134054825 G A NCAPD3 Missense_Mutation p.P770S 0.06 tolerated(0.1) benign(0.128) TCGA-44-8120-01 11 14287261 14287261 C A RP11-21L19.1 Intron 0.19 TCGA-44-8120-01 11 209243 209243 G T RIC8A Intron 0.21 TCGA-44-8120-01 11 21556038 21556038 A T NELL1 Silent p.S588S 0.26 TCGA-44-8120-01 11 2325383 2325383 C T TSPAN32 Silent p.A76A 0.27 TCGA-44-8120-01 11 31531349 31531349 C T ELP4 Silent p.T6T 0.23 TCGA-44-8120-01 11 34162089 34162089 G - NAT10 Frame_Shift_Del p.D856Tfs*36 0.23 TCGA-44-8120-01 11 3687632 3687632 C A CHRNA10 Missense_Mutation p.R353I 0.24 tolerated(0.19) benign(0.017) TCGA-44-8120-01 11 3846617 3846617 A G PGAP2 Missense_Mutation p.M293V 0.35 deleterious(0.04) benign(0.166) TCGA-44-8120-01 11 4843473 4843473 C A OR51F2 Silent p.V286V 0.23 TCGA-44-8120-01 11 4936071 4936071 G A OR51G2 Missense_Mutation p.H275Y 0.15 deleterious(0.04) possibly_damaging(0.799) TCGA-44-8120-01 11 5067928 5067928 G T OR52J3 Missense_Mutation p.R58L 0.26 deleterious(0) benign(0.369) TCGA-44-8120-01 11 5254177 5254177 G T HBD 3'UTR 0.19 TCGA-44-8120-01 11 55406709 55406709 G T OR4P4 Missense_Mutation p.M292I 0.57 deleterious(0.04) benign(0.013) TCGA-44-8120-01 11 55540951 55540951 C A OR5D13 Missense_Mutation p.T13N 0.24 deleterious(0.02) benign(0.03) TCGA-44-8120-01 11 55579547 55579547 T A OR5L1 Missense_Mutation p.V202E 0.23 deleterious(0.03) possibly_damaging(0.857) TCGA-44-8120-01 11 55944224 55944224 G C OR5J2 Missense_Mutation p.G44A 0.25 deleterious(0.01) possibly_damaging(0.858) TCGA-44-8120-01 11 57177451 57177451 G A SLC43A3 Missense_Mutation p.R402C 0.27 deleterious(0) probably_damaging(1) TCGA-44-8120-01 11 57995559 57995559 C A OR10Q1 Silent p.V263V 0.19 TCGA-44-8120-01 11 58035099 58035099 G T OR10W1 Missense_Mutation p.Q78K 0.31 tolerated(0.54) benign(0.006) TCGA-44-8120-01 11 58477473 58477473 C A GLYAT Missense_Mutation p.W219C 0.30 deleterious(0) probably_damaging(0.999) TCGA-44-8120-01 11 5878827 5878827 G T OR52E8 Missense_Mutation p.P36T 0.40 deleterious(0) possibly_damaging(0.611) TCGA-44-8120-01 11 60183265 60183265 A C MS4A14 Missense_Mutation p.K308T 0.20 tolerated(0.26) benign(0.007) TCGA-44-8120-01 11 60233571 60233571 C - MS4A1 Frame_Shift_Del p.S173Lfs*24 0.21 TCGA-44-8120-01 11 60739307 60739307 C A CD6 5'UTR 0.23 TCGA-44-8120-01 11 61646223 61646223 G C FADS3 Missense_Mutation p.L207V 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-44-8120-01 11 618107 618107 G A CDHR5 Silent p.G655G 0.24 TCGA-44-8120-01 11 62571367 62571367 G T NXF1 Missense_Mutation p.R38S 0.31 tolerated(0.92) benign(0.001) TCGA-44-8120-01 11 62649388 62649388 C T SLC3A2 Silent p.L252L 0.30 TCGA-44-8120-01 11 64677292 64677292 C A ATG2A Silent p.P656P 0.27 TCGA-44-8120-01 11 66189683 66189683 G T NPAS4 Missense_Mutation p.A90S 0.24 tolerated(0.96) benign(0.085) TCGA-44-8120-01 11 67052855 67052855 G T ADRBK1 Silent p.P668P 0.21 TCGA-44-8120-01 11 67198888 67198888 G T RPS6KB2 Missense_Mutation p.R120L 0.22 deleterious(0) benign(0.337) TCGA-44-8120-01 11 67286594 67286594 C T CABP2 3'UTR 0.22 TCGA-44-8120-01 11 71929607 71929607 C T FOLR2 Intron 0.30 TCGA-44-8120-01 11 86518772 86518772 A T PRSS23 Missense_Mutation p.K29N 0.29 tolerated(0.25) benign(0.4) TCGA-44-8120-01 11 87847300 87847300 T A RAB38 Silent p.I164I 0.28 TCGA-44-8120-01 11 92532563 92532563 C - FAT3 Frame_Shift_Del p.H2129Tfs*13 0.26 TCGA-44-8120-01 11 92532887 92532887 C T FAT3 Silent p.D2236D 0.19 TCGA-44-8120-01 11 92533609 92533609 C G FAT3 Missense_Mutation p.T2477S 0.23 probably_damaging(0.969) TCGA-44-8120-01 11 93844084 93844084 C A HEPHL1 Silent p.R1021R 0.33 TCGA-44-8120-01 12 110944402 110944402 A G RAD9B Missense_Mutation p.R98G 0.35 deleterious(0) possibly_damaging(0.702) TCGA-44-8120-01 12 111742070 111742070 C A CUX2 Silent p.V270V 0.29 TCGA-44-8120-01 12 125626689 125626689 G T AACS Nonsense_Mutation p.G645* 0.40 TCGA-44-8120-01 12 125626690 125626690 G T AACS Missense_Mutation p.G645V 0.39 deleterious(0) probably_damaging(0.997) TCGA-44-8120-01 12 132515834 132515834 G T EP400 Intron 0.29 TCGA-44-8120-01 12 20766430 20766430 C A PDE3A Silent p.G355G 0.35 TCGA-44-8120-01 12 22028652 22028652 A G ABCC9 Silent p.N676N 0.34 TCGA-44-8120-01 12 2775903 2775903 G A CACNA1C Silent p.P1574P 0.42 TCGA-44-8120-01 12 2906343 2906343 A G FKBP4 Missense_Mutation p.I49V 0.30 tolerated(0.13) benign(0.014) TCGA-44-8120-01 12 39701509 39701509 C A KIF21A Nonsense_Mutation p.G1434* 0.32 TCGA-44-8120-01 12 45429840 45429840 C A DBX2 Missense_Mutation p.G154V 0.45 deleterious(0) probably_damaging(0.997) TCGA-44-8120-01 12 46244897 46244897 G T ARID2 Missense_Mutation p.Q997H 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.72) TCGA-44-8120-01 12 46244898 46244898 G T ARID2 Nonsense_Mutation p.G998* 0.38 TCGA-44-8120-01 12 48387830 48387830 C A COL2A1 Missense_Mutation p.G273C 0.33 unknown(0) TCGA-44-8120-01 12 4848388 4848388 T C GALNT8 Missense_Mutation p.V190A 0.31 deleterious(0) benign(0.077) TCGA-44-8120-01 12 54943709 54943709 C A PDE1B Missense_Mutation p.P18Q 0.30 deleterious_low_confidence(0.04) probably_damaging(0.965) TCGA-44-8120-01 12 56495645 56495645 A T ERBB3 Missense_Mutation p.M1279L 0.36 tolerated(0.34) benign(0.052) TCGA-44-8120-01 12 6946682 6946682 G A LEPREL2 Silent p.P551P 0.28 TCGA-44-8120-01 12 7362677 7362677 G A PEX5 Missense_Mutation p.R608Q 0.18 tolerated(0.77) benign(0.007) TCGA-44-8120-01 12 78225315 78225315 C T NAV3 Missense_Mutation p.P25L 0.38 deleterious_low_confidence(0.02) benign(0.014) TCGA-44-8120-01 12 78511997 78511997 G T NAV3 Missense_Mutation p.G987V 0.26 deleterious(0.02) probably_damaging(0.996) TCGA-44-8120-01 12 85497801 85497801 C A LRRIQ1 Missense_Mutation p.L1077I 0.21 deleterious(0) probably_damaging(0.997) TCGA-44-8120-01 12 9020543 9020543 A G A2ML1 Missense_Mutation p.T1275A 0.47 tolerated(0.52) benign(0.003) TCGA-44-8120-01 13 101795542 101795542 G T NALCN Silent p.R669R 0.48 TCGA-44-8120-01 13 107147282 107147282 G A EFNB2 Missense_Mutation p.A187V 0.10 tolerated(0.19) benign(0.011) TCGA-44-8120-01 13 29608083 29608083 C A MTUS2 Missense_Mutation p.P766H 0.31 deleterious(0) probably_damaging(1) TCGA-44-8120-01 13 37678426 37678426 G A CSNK1A1L Missense_Mutation p.T323I 0.40 deleterious_low_confidence(0.01) benign(0.264) TCGA-44-8120-01 13 37678601 37678601 C T CSNK1A1L Missense_Mutation p.G265R 0.29 tolerated_low_confidence(0.12) benign(0.119) TCGA-44-8120-01 13 39544448 39544448 C A STOML3 Silent p.V130V 0.28 TCGA-44-8120-01 13 47286680 47286680 A C LRCH1 Silent p.A534A 0.39 TCGA-44-8120-01 13 51855003 51855003 C A FAM124A Missense_Mutation p.L454M 0.29 tolerated(0.31) possibly_damaging(0.861) TCGA-44-8120-01 13 77460026 77460026 G A KCTD12 Silent p.G86G 0.33 TCGA-44-8120-01 13 92345802 92345802 C A GPC5 Silent p.L229L 0.35 TCGA-44-8120-01 13 95861710 95861710 C A ABCC4 Missense_Mutation p.G255W 0.28 deleterious(0.01) possibly_damaging(0.867) TCGA-44-8120-01 13 98116760 98116760 A C RAP2A 3'UTR 0.47 TCGA-44-8120-01 14 106667852 106667852 C A IGHV3-20 Missense_Mutation p.G27V 0.35 deleterious_low_confidence(0.02) possibly_damaging(0.492) TCGA-44-8120-01 14 24785485 24785485 G A LTB4R Missense_Mutation p.A210T 0.19 tolerated(0.23) benign(0.026) TCGA-44-8120-01 14 24974753 24974753 G T CMA1 Missense_Mutation p.P238H 0.25 deleterious(0.04) probably_damaging(0.98) TCGA-44-8120-01 14 28734145 28734145 C A BNIP3P1 RNA 0.21 TCGA-44-8120-01 14 31643008 31643008 G A HECTD1 Missense_Mutation p.S203L 0.22 deleterious(0) possibly_damaging(0.65) TCGA-44-8120-01 14 34269576 34269576 C T NPAS3 Missense_Mutation p.S688F 0.27 tolerated_low_confidence(0.25) benign(0.302) TCGA-44-8120-01 14 47324346 47324346 C A MDGA2 Missense_Mutation p.V922F 0.25 deleterious(0) possibly_damaging(0.663) TCGA-44-8120-01 14 47530454 47530454 G T MDGA2 Missense_Mutation p.T508K 0.25 deleterious(0) probably_damaging(0.999) TCGA-44-8120-01 14 63417159 63417159 C A KCNH5 Missense_Mutation p.C354F 0.34 tolerated(0.06) probably_damaging(0.999) TCGA-44-8120-01 14 63784565 63784565 C A GPHB5 Splice_Site 0.45 TCGA-44-8120-01 14 72961919 72961919 C A RGS6 Missense_Mutation p.P305Q 0.33 tolerated(0.1) possibly_damaging(0.898) TCGA-44-8120-01 14 73407080 73407080 A - DCAF4 Frame_Shift_Del p.K117Rfs*29 0.13 TCGA-44-8120-01 14 86089824 86089824 G C FLRT2 Missense_Mutation p.E656Q 0.29 deleterious(0.01) benign(0.306) TCGA-44-8120-01 14 94088551 94088551 G - UNC79 Frame_Shift_Del p.G1481Afs*22 0.21 TCGA-44-8120-01 15 101041992 101041992 C G CERS3 Missense_Mutation p.K21N 0.24 deleterious(0.04) benign(0.101) TCGA-44-8120-01 15 102304724 102304724 G A DNM1P47 RNA 0.21 TCGA-44-8120-01 15 22706036 22706036 G A AC116165.1 5'Flank 0.33 TCGA-44-8120-01 15 22958289 22958289 G T CYFIP1 Missense_Mutation p.M644I 0.41 tolerated(0.15) benign(0.075) TCGA-44-8120-01 15 25468338 25468338 G T SNORD115-27 3'Flank 0.32 TCGA-44-8120-01 15 25925106 25925106 G T ATP10A Silent p.S1294S 0.31 TCGA-44-8120-01 15 27777972 27777972 C A GABRG3 Missense_Mutation p.P450H 0.33 deleterious(0) probably_damaging(1) TCGA-44-8120-01 15 31212791 31212791 G C FAN1 Missense_Mutation p.G663R 0.29 deleterious(0.02) possibly_damaging(0.83) TCGA-44-8120-01 15 31851274 31851274 T G OTUD7A Missense_Mutation p.T150P 0.34 deleterious(0) probably_damaging(0.996) TCGA-44-8120-01 15 34151870 34151870 G C RYR3 Missense_Mutation p.R4746P 0.19 probably_damaging(0.995) TCGA-44-8120-01 15 37001439 37001439 G T C15orf41 Missense_Mutation p.R187L 0.30 deleterious(0) probably_damaging(1) TCGA-44-8120-01 15 43270092 43270092 G A UBR1 Silent p.L1402L 0.27 TCGA-44-8120-01 15 43489635 43489635 G C EPB42 Silent p.T677T 0.32 TCGA-44-8120-01 15 43891573 43891573 C A CKMT1B 3'UTR 0.61 TCGA-44-8120-01 15 48537084 48537084 C A SLC12A1 Missense_Mutation p.L479M 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-44-8120-01 15 49907321 49907321 G T FAM227B Silent p.P16P 0.26 TCGA-44-8120-01 15 58302882 58302882 C A ALDH1A2 Missense_Mutation p.W153L 0.28 deleterious(0.03) possibly_damaging(0.835) TCGA-44-8120-01 15 58938268 58938268 C G ADAM10 Missense_Mutation p.A241P 0.26 tolerated(0.13) possibly_damaging(0.863) TCGA-44-8120-01 15 63547708 63547708 C T RAB8B Silent p.G83G 0.26 TCGA-44-8120-01 15 84561544 84561544 G T ADAMTSL3 Silent p.V457V 0.22 TCGA-44-8120-01 15 84561545 84561545 G T ADAMTSL3 Nonsense_Mutation p.E458* 0.22 TCGA-44-8120-01 15 85223960 85223960 C A SEC11A Missense_Mutation p.V139L 0.19 tolerated(0.09) benign(0.11) TCGA-44-8120-01 15 86801250 86801250 T A AGBL1 Missense_Mutation p.D273E 0.21 tolerated(0.26) benign(0.015) TCGA-44-8120-01 15 86801251 86801251 G T AGBL1 Missense_Mutation p.G274W 0.21 tolerated(0.06) possibly_damaging(0.502) TCGA-44-8120-01 15 88679828 88679828 A G NTRK3 Missense_Mutation p.I212T 0.29 deleterious(0.01) benign(0.194) TCGA-44-8120-01 15 89415260 89415260 G T ACAN Missense_Mutation p.G2378C 0.24 deleterious(0) probably_damaging(1) TCGA-44-8120-01 15 90611029 90611029 A T ZNF710 Silent p.P220P 0.25 TCGA-44-8120-01 15 91456590 91456590 A T MAN2A2 Missense_Mutation p.D891V 0.20 deleterious(0) possibly_damaging(0.47) TCGA-44-8120-01 16 1270378 1270378 G T CACNA1H Missense_Mutation p.R2149L 0.50 tolerated(0.65) benign(0.198) TCGA-44-8120-01 16 14976528 14976528 G T NOMO1 Silent p.V1035V 0.15 TCGA-44-8120-01 16 18841079 18841079 T G SMG1 Splice_Site p.X3045_splice 0.08 TCGA-44-8120-01 16 23079370 23079370 C A USP31 Missense_Mutation p.Q1352H 0.21 tolerated_low_confidence(0.06) probably_damaging(0.993) TCGA-44-8120-01 16 23717691 23717691 G A ERN2 Silent p.R231R 0.24 TCGA-44-8120-01 16 24922815 24922815 C G SLC5A11 Missense_Mutation p.C663W 0.17 deleterious(0) probably_damaging(0.976) TCGA-44-8120-01 16 2550421 2550421 T C TBC1D24 Silent p.A485A 0.24 TCGA-44-8120-01 16 2550426 2550426 A G TBC1D24 Missense_Mutation p.H487R 0.22 deleterious(0.04) possibly_damaging(0.901) TCGA-44-8120-01 16 27078356 27078356 G T C16orf82 RNA 0.22 TCGA-44-8120-01 16 30664360 30664360 G - PRR14 Frame_Shift_Del p.A148Pfs*8 0.23 TCGA-44-8120-01 16 31120694 31120694 C T BCKDK Silent p.V50V 0.31 TCGA-44-8120-01 16 31383710 31383710 G T ITGAX Missense_Mutation p.E724D 0.25 deleterious(0.05) probably_damaging(0.971) TCGA-44-8120-01 16 31499738 31499738 G T SLC5A2 Missense_Mutation p.R352S 0.27 tolerated(0.39) benign(0.021) TCGA-44-8120-01 16 49671541 49671541 C A ZNF423 Missense_Mutation p.A508S 0.16 tolerated(0.75) benign(0.007) TCGA-44-8120-01 16 56377778 56377778 G T GNAO1 Silent p.T327T 0.22 TCGA-44-8120-01 16 57449729 57449729 G T CCL17 Missense_Mutation p.V81L 0.23 deleterious(0) probably_damaging(0.99) TCGA-44-8120-01 16 61687978 61687978 C A CDH8 Missense_Mutation p.R645L 0.17 deleterious(0) probably_damaging(0.995) TCGA-44-8120-01 16 67321889 67321889 C T PLEKHG4 Silent p.R1064R 0.25 TCGA-44-8120-01 16 67322284 67322284 G T PLEKHG4 Silent p.L1145L 0.36 TCGA-44-8120-01 16 67683455 67683455 G T RLTPR Missense_Mutation p.G618C 0.24 deleterious(0) probably_damaging(1) TCGA-44-8120-01 16 68405406 68405406 C G SMPD3 Missense_Mutation p.G227R 0.37 tolerated(0.35) possibly_damaging(0.65) TCGA-44-8120-01 16 71015294 71015294 C A HYDIN Missense_Mutation p.A1504S 0.24 benign(0.04) TCGA-44-8120-01 16 71015295 71015295 T C HYDIN Silent p.T1503T 0.24 TCGA-44-8120-01 16 71096192 71096192 G T HYDIN Silent p.P752P 0.29 TCGA-44-8120-01 16 72827573 72827573 T A ZFHX3 Missense_Mutation p.K3003M 0.35 unknown(0) TCGA-44-8120-01 16 75513022 75513022 G A CHST6 Silent p.A235A 0.19 TCGA-44-8120-01 16 7629815 7629815 C A RBFOX1 Missense_Mutation p.Q123K 0.20 deleterious(0.01) benign(0.302) TCGA-44-8120-01 16 76350405 76350405 C A CNTNAP4 Missense_Mutation p.L36M 0.22 deleterious(0) probably_damaging(0.999) TCGA-44-8120-01 16 82891972 82891972 G T CDH13 Silent p.L64L 0.14 TCGA-44-8120-01 16 84256100 84256100 C A KCNG4 Missense_Mutation p.S428I 0.25 deleterious(0) probably_damaging(0.999) TCGA-44-8120-01 16 86612284 86612284 C G FOXL1 5'UTR 0.46 TCGA-44-8120-01 16 88873713 88873713 C T CDT1 Nonsense_Mutation p.Q434* 0.25 TCGA-44-8120-01 17 10432536 10432536 C A MYH2 Missense_Mutation p.K1099N 0.32 deleterious(0) possibly_damaging(0.765) TCGA-44-8120-01 17 16326793 16326793 C A TRPV2 Silent p.P212P 0.23 TCGA-44-8120-01 17 18389309 18389309 C A LGALS9C Silent p.R65R 0.31 TCGA-44-8120-01 17 1961716 1961716 G A HIC1 Missense_Mutation p.G597S 0.28 deleterious(0) probably_damaging(1) TCGA-44-8120-01 17 2076091 2076091 T G SMG6 Missense_Mutation p.Q1073P 0.43 tolerated(0.2) benign(0.218) TCGA-44-8120-01 17 21318672 21318672 G T KCNJ12 Silent p.R6R 0.11 TCGA-44-8120-01 17 26958649 26958649 C A KIAA0100 Missense_Mutation p.V1383L 0.22 tolerated(0.31) benign(0.065) TCGA-44-8120-01 17 27031367 27031367 A T PROCA1 Missense_Mutation p.L105H 0.26 deleterious(0.01) benign(0.103) TCGA-44-8120-01 17 33331509 33331509 T C LIG3 Missense_Mutation p.L1005P 0.21 deleterious(0) probably_damaging(0.968) TCGA-44-8120-01 17 33679388 33679388 C T SLFN11 Nonsense_Mutation p.W898* 0.23 TCGA-44-8120-01 17 37627734 37627735 - T CDK12 Frame_Shift_Ins p.L551Ffs*24 0.30 TCGA-44-8120-01 17 3840746 3840746 C A ATP2A3 Missense_Mutation p.R762L 0.30 deleterious(0) probably_damaging(1) TCGA-44-8120-01 17 38926023 38926023 G C KRT26 Missense_Mutation p.Q318E 0.25 deleterious(0) probably_damaging(0.995) TCGA-44-8120-01 17 39643253 39643253 A T KRT36 Missense_Mutation p.L386Q 0.28 deleterious(0) probably_damaging(1) TCGA-44-8120-01 17 40273005 40273005 T A KAT2A Silent p.L106L 0.21 TCGA-44-8120-01 17 40766619 40766619 C A TUBG1 Missense_Mutation p.P368T 0.21 tolerated(0.26) benign(0.001) TCGA-44-8120-01 17 40766620 40766620 C T TUBG1 Missense_Mutation p.P368L 0.21 tolerated(0.05) benign(0.097) TCGA-44-8120-01 17 42635240 42635240 G C FZD2 Missense_Mutation p.G62R 0.22 deleterious(0) probably_damaging(0.943) TCGA-44-8120-01 17 43922916 43922916 G A SPPL2C Missense_Mutation p.R215Q 0.30 tolerated(0.15) possibly_damaging(0.778) TCGA-44-8120-01 17 45788016 45788016 G A TBKBP1 3'UTR 0.04 TCGA-44-8120-01 17 48677149 48677149 C A CACNA1G Missense_Mutation p.R1207S 0.37 tolerated(0.63) benign(0.001) TCGA-44-8120-01 17 55927381 55927381 C A MRPS23 5'UTR 0.43 TCGA-44-8120-01 17 59485425 59485425 T G TBX2 Missense_Mutation p.M566R 0.20 deleterious(0.03) probably_damaging(0.917) TCGA-44-8120-01 17 60814344 60814344 G A MARCH10 Silent p.T295T 0.27 TCGA-44-8120-01 17 67092911 67092911 C A ABCA6 Missense_Mutation p.G1051V 0.15 deleterious(0) probably_damaging(1) TCGA-44-8120-01 17 68128471 68128471 T A KCNJ16 Nonsense_Mutation p.Y81* 0.23 TCGA-44-8120-01 17 72349637 72349637 C T KIF19 Missense_Mutation p.P742L 0.16 tolerated(0.14) benign(0.001) TCGA-44-8120-01 17 72349697 72349697 C T KIF19 Missense_Mutation p.S762L 0.19 deleterious(0.04) benign(0.002) TCGA-44-8120-01 17 73242605 73242605 C G GGA3 Silent p.A62A 0.11 TCGA-44-8120-01 17 74944865 74944865 G T MGAT5B Missense_Mutation p.C784F 0.24 deleterious(0) probably_damaging(1) TCGA-44-8120-01 17 7573982 7573982 C A TP53 Nonsense_Mutation p.E349* 0.44 TCGA-44-8120-01 17 80361846 80361846 C A OGFOD3 Silent p.A222A 0.25 TCGA-44-8120-01 18 14542966 14542966 C T POTEC Silent p.K60K 0.07 TCGA-44-8120-01 18 14791470 14791470 C T ANKRD30B Missense_Mutation p.T602I 0.31 tolerated(0.18) possibly_damaging(0.466) TCGA-44-8120-01 18 19399576 19399576 C T MIB1 Silent p.L600L 0.29 TCGA-44-8120-01 18 19780756 19780756 G T GATA6 Silent p.P586P 0.21 TCGA-44-8120-01 18 20878011 20878011 C A TMEM241 Missense_Mutation p.G284V 0.12 deleterious(0) probably_damaging(0.98) TCGA-44-8120-01 18 20878012 20878012 C A TMEM241 Nonsense_Mutation p.G284* 0.12 TCGA-44-8120-01 18 21487531 21487531 A T LAMA3 Missense_Mutation p.N2246Y 0.25 benign(0.372) TCGA-44-8120-01 18 25543335 25543335 C - CDH2 Frame_Shift_Del p.D834Tfs*23 0.23 TCGA-44-8120-01 18 2566940 2566940 C G METTL4 Silent p.L92L 0.24 TCGA-44-8120-01 18 31320181 31320181 A T ASXL3 Missense_Mutation p.H938L 0.31 possibly_damaging(0.758) TCGA-44-8120-01 18 42531486 42531486 G T SETBP1 Silent p.R727R 0.14 TCGA-44-8120-01 18 42531662 42531662 C A SETBP1 Missense_Mutation p.S786Y 0.16 tolerated(0.08) possibly_damaging(0.87) TCGA-44-8120-01 18 5419754 5419754 C T EPB41L3 Missense_Mutation p.G488R 0.15 deleterious(0.01) benign(0.017) TCGA-44-8120-01 18 56246287 56246287 G - ALPK2 Frame_Shift_Del p.P574Hfs*2 0.20 TCGA-44-8120-01 18 61390705 61390705 A T SERPINB11 3'UTR 0.35 TCGA-44-8120-01 18 61468114 61468114 A T SERPINB7 Silent p.A204A 0.16 TCGA-44-8120-01 18 61570294 61570294 A C SERPINB2 Missense_Mutation p.K335Q 0.25 tolerated(0.91) benign(0.026) TCGA-44-8120-01 18 6985641 6985641 T A LAMA1 Missense_Mutation p.D1794V 0.12 tolerated(0.18) benign(0.082) TCGA-44-8120-01 18 72247452 72247452 G T CNDP1 Missense_Mutation p.W418C 0.23 deleterious(0) probably_damaging(1) TCGA-44-8120-01 19 1220502 1220502 G T STK11 Nonsense_Mutation p.E199* 0.38 TCGA-44-8120-01 19 15529829 15529829 C A AKAP8L 5'UTR 0.27 TCGA-44-8120-01 19 18258419 18258419 C T MAST3 Missense_Mutation p.P1127S 0.40 tolerated(0.08) benign(0.022) TCGA-44-8120-01 19 21990397 21990397 C A ZNF43 3'UTR 0.19 TCGA-44-8120-01 19 23836599 23836599 C A ZNF675 Missense_Mutation p.R379L 0.33 tolerated(0.67) benign(0.309) TCGA-44-8120-01 19 31039408 31039408 G T ZNF536 Missense_Mutation p.G961V 0.34 tolerated_low_confidence(0.32) benign(0.001) TCGA-44-8120-01 19 3115012 3115012 C T GNA11 Missense_Mutation p.R183C 0.32 deleterious(0) probably_damaging(1) TCGA-44-8120-01 19 36884910 36884910 C A ZFP82 Missense_Mutation p.G111V 0.25 deleterious(0.04) benign(0.236) TCGA-44-8120-01 19 37677113 37677113 G A ZNF585B Silent p.H442H 0.39 TCGA-44-8120-01 19 38714820 38714820 G T DPF1 Missense_Mutation p.P15Q 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.828) TCGA-44-8120-01 19 43268370 43268370 G T PSG8 Missense_Mutation p.T43N 0.38 tolerated(0.29) benign(0.428) TCGA-44-8120-01 19 48609818 48609818 C T PLA2G4C Silent p.R10R 0.32 TCGA-44-8120-01 19 51217441 51217441 C T SHANK1 Missense_Mutation p.G213E 0.34 probably_damaging(0.966) TCGA-44-8120-01 19 51381888 51381888 G T KLK2 3'UTR 0.48 TCGA-44-8120-01 19 51630385 51630385 G T SIGLEC9 Missense_Mutation p.A283S 0.31 deleterious(0.05) probably_damaging(1) TCGA-44-8120-01 19 51671594 51671594 A G CTD-3187F8.14 Intron 0.41 TCGA-44-8120-01 19 53905341 53905341 G T ZNF765 Silent p.V13V 0.14 TCGA-44-8120-01 19 54410100 54410100 A C PRKCG Missense_Mutation p.H682P 0.23 tolerated(0.05) benign(0.005) TCGA-44-8120-01 19 55710200 55710200 G T PTPRH Missense_Mutation p.P501T 0.31 possibly_damaging(0.823) TCGA-44-8120-01 19 56241297 56241298 AG T NLRP9 Frame_Shift_Del p.N631Kfs*5 0.45 TCGA-44-8120-01 19 57061523 57061523 G C ZFP28 Missense_Mutation p.E259Q 0.45 deleterious(0.03) possibly_damaging(0.543) TCGA-44-8120-01 19 57326711 57326711 A T PEG3 Nonsense_Mutation p.C1033* 0.25 TCGA-44-8120-01 19 57869260 57869260 A G ZNF304 3'UTR 0.37 TCGA-44-8120-01 19 58003818 58003818 G T ZNF419 Intron 0.31 TCGA-44-8120-01 19 58189781 58189781 G - ZSCAN4 Frame_Shift_Del p.G271Efs*58 0.24 TCGA-44-8120-01 19 6472948 6472948 A T DENND1C Silent p.P370P 0.36 TCGA-44-8120-01 19 7747568 7747568 G T TRAPPC5 Silent p.T143T 0.44 TCGA-44-8120-01 19 9524150 9524150 C A ZNF266 Missense_Mutation p.R484L 0.16 deleterious(0) possibly_damaging(0.67) TCGA-44-8120-01 1 100620700 100620700 G A LRRC39 Missense_Mutation p.T240I 0.25 tolerated(0.07) possibly_damaging(0.791) TCGA-44-8120-01 1 100843119 100843119 G T CDC14A Missense_Mutation p.G53V 0.16 deleterious(0) probably_damaging(1) TCGA-44-8120-01 1 104297163 104297163 G T AMY1C Silent p.A307A 0.09 TCGA-44-8120-01 1 109377550 109377550 C T AKNAD1 Splice_Site p.X555_splice 0.21 TCGA-44-8120-01 1 111216997 111216997 G T KCNA3 Missense_Mutation p.N145K 0.20 deleterious(0.01) probably_damaging(1) TCGA-44-8120-01 1 112298286 112298286 C A DDX20 5'UTR 0.29 TCGA-44-8120-01 1 113264875 113264875 G A FAM19A3 Missense_Mutation p.R7Q 0.25 tolerated_low_confidence(0.43) benign(0.007) TCGA-44-8120-01 1 12785378 12785378 C A AADACL3 Silent p.P156P 0.23 TCGA-44-8120-01 1 12785667 12785667 G A AADACL3 Missense_Mutation p.A253T 0.29 tolerated(0.4) benign(0.076) TCGA-44-8120-01 1 145611284 145611284 A T RNF115 Silent p.V15V 0.20 TCGA-44-8120-01 1 149857800 149857800 C A HIST2H2BE 3'UTR 0.18 TCGA-44-8120-01 1 152185894 152185894 T A HRNR Silent p.G2737G 0.39 TCGA-44-8120-01 1 152281731 152281731 G T FLG Silent p.G1877G 0.27 TCGA-44-8120-01 1 152538356 152538356 G A LCE3E 3'UTR 0.20 TCGA-44-8120-01 1 152538570 152538570 G T LCE3E Missense_Mutation p.P39T 0.27 tolerated_low_confidence(0.94) unknown(0) TCGA-44-8120-01 1 153998025 153998025 C T NUP210L Missense_Mutation p.G1372E 0.21 tolerated(0.1) possibly_damaging(0.703) TCGA-44-8120-01 1 154544250 154544250 C G CHRNB2 Missense_Mutation p.C317W 0.22 deleterious(0.03) probably_damaging(1) TCGA-44-8120-01 1 155018633 155018633 T A DCST1 Silent p.A435A 0.17 TCGA-44-8120-01 1 156784910 156784910 G A SH2D2A Missense_Mutation p.A76V 0.26 deleterious(0.04) possibly_damaging(0.897) TCGA-44-8120-01 1 157491080 157491081 - A FCRL5 Frame_Shift_Ins p.P748Sfs*27 0.27 TCGA-44-8120-01 1 158326334 158326334 T A CD1E Silent p.V317V 0.27 TCGA-44-8120-01 1 158449917 158449917 G T OR10R2 Missense_Mutation p.G84C 0.20 tolerated(0.19) benign(0.021) TCGA-44-8120-01 1 158450286 158450286 C G OR10R2 Missense_Mutation p.L207V 0.25 deleterious(0.04) probably_damaging(0.957) TCGA-44-8120-01 1 158909015 158909015 C A PYHIN1 Missense_Mutation p.P186Q 0.17 deleterious(0) benign(0.394) TCGA-44-8120-01 1 159557618 159557618 G T APCS 5'UTR 0.25 TCGA-44-8120-01 1 160388865 160388865 C A VANGL2 Missense_Mutation p.T89K 0.18 tolerated(0.12) probably_damaging(0.984) TCGA-44-8120-01 1 166039942 166039942 C A FAM78B Missense_Mutation p.D108Y 0.25 deleterious(0) probably_damaging(0.98) TCGA-44-8120-01 1 166959054 166959054 C T MAEL Silent p.P71P 0.21 TCGA-44-8120-01 1 167095231 167095231 G T DUSP27 Missense_Mutation p.R288L 0.09 tolerated(0.29) benign(0.001) TCGA-44-8120-01 1 167400818 167400818 G T CD247 3'UTR 0.41 TCGA-44-8120-01 1 167659284 167659284 A G RCSD1 Splice_Site p.X67_splice 0.24 TCGA-44-8120-01 1 167666363 167666363 C A RCSD1 Missense_Mutation p.R168S 0.20 deleterious(0) probably_damaging(0.999) TCGA-44-8120-01 1 169582824 169582824 C A SELP Missense_Mutation p.V197L 0.19 deleterious(0.03) benign(0.366) TCGA-44-8120-01 1 170695536 170695536 C G PRRX1 Missense_Mutation p.P198R 0.15 deleterious(0) benign(0.402) TCGA-44-8120-01 1 171173137 171173137 G T FMO2 Missense_Mutation p.W254L 0.23 tolerated(0.28) benign(0.032) TCGA-44-8120-01 1 175086138 175086138 G A TNN Nonsense_Mutation p.W728* 0.26 TCGA-44-8120-01 1 180905607 180905607 C A KIAA1614 Silent p.T854T 0.25 TCGA-44-8120-01 1 186276447 186276447 C A PRG4 Silent p.T532T 0.08 TCGA-44-8120-01 1 18691805 18691805 G T IGSF21 Missense_Mutation p.R210M 0.13 deleterious(0.02) possibly_damaging(0.905) TCGA-44-8120-01 1 19175931 19175931 C A TAS1R2 Silent p.R457R 0.28 TCGA-44-8120-01 1 19992174 19992174 C G HTR6 5'UTR 0.05 TCGA-44-8120-01 1 20063935 20063935 G A TMCO4 Silent p.V398V 0.14 TCGA-44-8120-01 1 208062945 208062945 C A CD34 Nonsense_Mutation p.G207* 0.28 TCGA-44-8120-01 1 210273447 210273447 G C SYT14 Missense_Mutation p.D314H 0.19 deleterious(0.02) benign(0.343) TCGA-44-8120-01 1 211952321 211952321 T C LPGAT1 Missense_Mutation p.I265V 0.22 deleterious(0.01) benign(0.001) TCGA-44-8120-01 1 213146272 213146272 T A VASH2 Missense_Mutation p.L239Q 0.21 deleterious(0) probably_damaging(1) TCGA-44-8120-01 1 220091747 220091747 C A SLC30A10 Nonsense_Mutation p.E270* 0.26 TCGA-44-8120-01 1 22178609 22178609 C G HSPG2 Missense_Mutation p.R2281P 0.29 probably_damaging(0.995) TCGA-44-8120-01 1 22216503 22216503 T A HSPG2 Missense_Mutation p.Q182L 0.33 benign(0.044) TCGA-44-8120-01 1 226076607 226076607 G T LEFTY1 Missense_Mutation p.P54T 0.10 deleterious(0) probably_damaging(0.971) TCGA-44-8120-01 1 228401927 228401927 G T OBSCN Silent p.T437T 0.25 TCGA-44-8120-01 1 231474238 231474238 G T SPRTN Nonsense_Mutation p.E37* 0.28 TCGA-44-8120-01 1 233120129 233120130 - C PCNXL2 Frame_Shift_Ins p.V2112Gfs*63 0.24 TCGA-44-8120-01 1 236187372 236187372 T A NID1 Missense_Mutation p.Y709F 0.21 tolerated(0.14) benign(0.258) TCGA-44-8120-01 1 237777400 237777401 CT A RYR2 Frame_Shift_Del p.L1658Tfs*49 0.20 TCGA-44-8120-01 1 237813176 237813176 G T RYR2 Splice_Site p.X2505_splice 0.19 TCGA-44-8120-01 1 243292725 243292725 C A CEP170 Missense_Mutation p.W1450C 0.38 deleterious(0) probably_damaging(0.998) TCGA-44-8120-01 1 247614520 247614520 G T OR2B11 Missense_Mutation p.F255L 0.22 deleterious(0) probably_damaging(0.987) TCGA-44-8120-01 1 247614524 247614524 A T OR2B11 Missense_Mutation p.L254H 0.20 deleterious(0) probably_damaging(0.947) TCGA-44-8120-01 1 247902544 247902544 G T OR14K1 Missense_Mutation p.V210F 0.22 tolerated(0.07) benign(0.074) TCGA-44-8120-01 1 248004999 248004999 G T OR11L1 Missense_Mutation p.S67Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-44-8120-01 1 248263217 248263217 C - OR2L13 Frame_Shift_Del p.P181Qfs*20 0.20 TCGA-44-8120-01 1 248367301 248367301 G C OR2M3 Missense_Mutation p.G311A 0.26 tolerated(0.4) benign(0.008) TCGA-44-8120-01 1 248458606 248458606 C T OR2T12 Missense_Mutation p.R92H 0.24 tolerated(0.45) benign(0.146) TCGA-44-8120-01 1 248512651 248512651 G T OR14C36 Missense_Mutation p.S192I 0.39 tolerated(0.42) benign(0.248) TCGA-44-8120-01 1 248813285 248813285 G T OR2T27 Missense_Mutation p.L301I 0.23 deleterious(0.01) benign(0.245) TCGA-44-8120-01 1 26510958 26510958 G T CNKSR1 Missense_Mutation p.G356V 0.36 deleterious(0.05) benign(0.007) TCGA-44-8120-01 1 2939016 2939016 C A ACTRT2 Missense_Mutation p.L256M 0.30 tolerated(0.11) probably_damaging(0.968) TCGA-44-8120-01 1 34667817 34667817 C A C1orf94 Missense_Mutation p.P468H 0.33 deleterious(0) probably_damaging(0.986) TCGA-44-8120-01 1 35370500 35370500 G T DLGAP3 Missense_Mutation p.P162H 0.31 tolerated(0.32) benign(0.174) TCGA-44-8120-01 1 36755042 36755042 G T THRAP3 Silent p.L474L 0.24 TCGA-44-8120-01 1 38411524 38411524 T C INPP5B Splice_Site p.X20_splice 0.28 TCGA-44-8120-01 1 43774689 43774689 G T TIE1 Nonsense_Mutation p.E359* 0.21 TCGA-44-8120-01 1 44364921 44364921 T C ST3GAL3 Silent p.Y250Y 0.18 TCGA-44-8120-01 1 45981452 45981452 G A PRDX1 Missense_Mutation p.P45L 0.19 deleterious(0) probably_damaging(0.959) TCGA-44-8120-01 1 53122564 53122564 C A FAM159A Missense_Mutation p.P142Q 0.18 tolerated(0.28) benign(0.015) TCGA-44-8120-01 1 53555612 53555612 G T SLC1A7 Intron 0.28 TCGA-44-8120-01 1 62728915 62728915 G T KANK4 Silent p.A796A 0.29 TCGA-44-8120-01 1 63099202 63099202 T G DOCK7 Silent p.P361P 0.22 TCGA-44-8120-01 1 64605916 64605916 T C ROR1 Silent p.R245R 0.16 TCGA-44-8120-01 1 65874408 65874408 C G DNAJC6 Missense_Mutation p.T859R 0.18 deleterious(0) probably_damaging(0.999) TCGA-44-8120-01 1 6674105 6674105 G A PHF13 5'UTR 0.30 TCGA-44-8120-01 1 70503868 70503868 C A LRRC7 Silent p.G749G 0.24 TCGA-44-8120-01 1 75005940 75005940 G T TNNI3K Missense_Mutation p.G893C 0.21 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-44-8120-01 1 75037385 75037385 C A C1orf173 Missense_Mutation p.V1337F 0.28 deleterious(0) possibly_damaging(0.682) TCGA-44-8120-01 1 75038558 75038558 C A C1orf173 Nonsense_Mutation p.E946* 0.22 TCGA-44-8120-01 1 75097537 75097537 T A C1orf173 Missense_Mutation p.I227F 0.20 deleterious(0) probably_damaging(0.994) TCGA-44-8120-01 1 75622603 75622603 G A LHX8 Missense_Mutation p.R279H 0.20 deleterious(0) probably_damaging(0.98) TCGA-44-8120-01 1 76205693 76205693 G C ACADM Missense_Mutation p.G170A 0.17 deleterious(0) probably_damaging(0.995) TCGA-44-8120-01 1 78958700 78958700 T C PTGFR Missense_Mutation p.V91A 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-44-8120-01 1 84955387 84955387 C T RPF1 Silent p.I146I 0.30 TCGA-44-8120-01 1 85733431 85733431 C A BCL10 Missense_Mutation p.R194I 0.19 deleterious(0.04) benign(0.364) TCGA-44-8120-01 1 89835170 89835170 C A GBP6 Missense_Mutation p.P86T 0.31 deleterious(0) probably_damaging(0.932) TCGA-44-8120-01 1 89847286 89847286 C T GBP6 Missense_Mutation p.A302V 0.21 deleterious(0.03) possibly_damaging(0.809) TCGA-44-8120-01 1 9777033 9777033 T A PIK3CD Missense_Mutation p.L266Q 0.37 deleterious(0.04) possibly_damaging(0.583) TCGA-44-8120-01 1 99772360 99772360 C G LPPR4 Missense_Mutation p.H696D 0.13 tolerated(0.08) benign(0.055) TCGA-44-8120-01 20 17462642 17462642 A G PCSK2 Missense_Mutation p.K615R 0.24 deleterious(0.05) benign(0.178) TCGA-44-8120-01 20 18529366 18529366 C T SEC23B Silent p.I619I 0.23 TCGA-44-8120-01 20 18794652 18794652 A - SCP2D1 Frame_Shift_Del p.V66Sfs*23 0.26 TCGA-44-8120-01 20 20599944 20599944 C T RALGAPA2 Missense_Mutation p.A506T 0.23 deleterious(0.03) benign(0.38) TCGA-44-8120-01 20 23586268 23586268 C G CST9 Missense_Mutation p.R78S 0.20 tolerated(0.05) possibly_damaging(0.688) TCGA-44-8120-01 20 2776528 2776528 C T CPXM1 Silent p.T479T 0.23 TCGA-44-8120-01 20 3214780 3214780 G T SLC4A11 Missense_Mutation p.L201M 0.17 tolerated(0.1) benign(0.132) TCGA-44-8120-01 20 32848321 32848321 C G ASIP Silent p.V47V 0.24 TCGA-44-8120-01 20 34568544 34568544 G T CNBD2 Missense_Mutation p.R136L 0.35 deleterious(0) probably_damaging(0.971) TCGA-44-8120-01 20 3565369 3565369 G C ATRN Missense_Mutation p.S1009T 0.28 tolerated(0.14) possibly_damaging(0.491) TCGA-44-8120-01 20 42695377 42695377 C A TOX2 Missense_Mutation p.P455Q 0.21 tolerated(0.06) possibly_damaging(0.62) TCGA-44-8120-01 20 42747205 42747205 G A JPH2 Nonsense_Mutation p.Q410* 0.23 TCGA-44-8120-01 20 42984469 42984469 G T R3HDML 3'Flank 0.17 TCGA-44-8120-01 20 44828102 44828102 C T CDH22 Silent p.T461T 0.15 TCGA-44-8120-01 20 47342863 47342863 C A PREX1 Silent p.P195P 0.21 TCGA-44-8120-01 20 4837786 4837786 G A SLC23A2 Silent p.L595L 0.30 TCGA-44-8120-01 20 4850575 4850575 G C SLC23A2 Silent p.P409P 0.29 TCGA-44-8120-01 20 50407760 50407760 G A SALL4 Missense_Mutation p.T421I 0.17 deleterious(0) probably_damaging(0.999) TCGA-44-8120-01 20 56284527 56284527 C G PMEPA1 Intron 0.33 TCGA-44-8120-01 20 58450495 58450495 C A SYCP2 Silent p.T1060T 0.22 TCGA-44-8120-01 20 5897523 5897523 G A CHGB Missense_Mutation p.A50T 0.21 tolerated(0.07) benign(0.221) TCGA-44-8120-01 20 61040929 61040929 G C GATA5 Missense_Mutation p.R292G 0.50 deleterious(0) probably_damaging(0.997) TCGA-44-8120-01 20 61870560 61870560 C G BIRC7 Silent p.V208V 0.13 TCGA-44-8120-01 20 61942891 61942907 GGTGAGCTGGGCCGGGG - COL20A1 Splice_Site p.X513_splice 0.22 TCGA-44-8120-01 20 8698467 8698467 C A PLCB1 Missense_Mutation p.S495R 0.19 tolerated(0.2) benign(0.129) TCGA-44-8120-01 20 9561310 9561310 G T PAK7 Missense_Mutation p.P158T 0.19 tolerated(0.26) benign(0.057) TCGA-44-8120-01 21 10914388 10914388 G T TPTE Missense_Mutation p.S444Y 0.15 tolerated(1) benign(0.316) TCGA-44-8120-01 21 10952928 10952928 G A TPTE Missense_Mutation p.S90L 0.15 tolerated(0.16) possibly_damaging(0.851) TCGA-44-8120-01 21 11039291 11039291 G A BAGE2 RNA 0.06 TCGA-44-8120-01 21 19704475 19704475 G T TMPRSS15 Missense_Mutation p.P527H 0.25 deleterious(0) probably_damaging(0.999) TCGA-44-8120-01 21 22906904 22906904 G A NCAM2 Missense_Mutation p.E777K 0.26 deleterious(0) benign(0.11) TCGA-44-8120-01 21 31587557 31587557 C A CLDN8 3'UTR 0.14 TCGA-44-8120-01 21 31655011 31655011 G T KRTAP24-1 Silent p.T80T 0.20 TCGA-44-8120-01 21 31988895 31988895 A G KRTAP20-1 Missense_Mutation p.Y41C 0.19 unknown(0) TCGA-44-8120-01 21 32492776 32492776 G A TIAM1 Silent p.I1562I 0.20 TCGA-44-8120-01 21 32525424 32525424 A T TIAM1 Missense_Mutation p.L1067Q 0.26 deleterious(0) possibly_damaging(0.714) TCGA-44-8120-01 21 44151978 44151978 G A PDE9A Missense_Mutation p.G121R 0.31 tolerated(0.52) benign(0.003) TCGA-44-8120-01 21 46067007 46067007 C A KRTAP10-11 Missense_Mutation p.A211D 0.36 deleterious(0.05) benign(0.038) TCGA-44-8120-01 22 16287300 16287300 C G POTEH Missense_Mutation p.V196L 0.12 tolerated(0.89) possibly_damaging(0.776) TCGA-44-8120-01 22 17445667 17445667 A G GAB4 Missense_Mutation p.Y489H 0.33 deleterious(0.02) benign(0) TCGA-44-8120-01 22 18066221 18066221 T A SLC25A18 Nonsense_Mutation p.C110* 0.26 TCGA-44-8120-01 22 21989105 21989124 CGTGCCTGAAGCATCAGAGC - CCDC116 Frame_Shift_Del p.V252Efs*16 0.28 TCGA-44-8120-01 22 23114924 23114924 A T IGLV3-12 Missense_Mutation p.I66F 0.37 deleterious(0) possibly_damaging(0.891) TCGA-44-8120-01 22 24086502 24086502 G C ZNF70 Missense_Mutation p.L276V 0.25 deleterious(0) probably_damaging(0.998) TCGA-44-8120-01 22 24837256 24837256 G T ADORA2A Missense_Mutation p.W346C 0.24 tolerated_low_confidence(0.14) benign(0.002) TCGA-44-8120-01 22 31008875 31008875 G A TCN2 Silent p.E91E 0.34 TCGA-44-8120-01 22 40362076 40362076 C A GRAP2 Missense_Mutation p.L125I 0.43 deleterious(0.01) probably_damaging(0.972) TCGA-44-8120-01 22 42120006 42120006 G A MEI1 Missense_Mutation p.G265R 0.41 tolerated(0.55) benign(0.001) TCGA-44-8120-01 22 51009633 51009633 C A CPT1B Missense_Mutation p.S610I 0.35 tolerated(0.45) benign(0.002) TCGA-44-8120-01 2 108487733 108487733 G T RGPD4 Missense_Mutation p.E1091D 0.25 tolerated(0.15) benign(0.121) TCGA-44-8120-01 2 113763577 113763577 G T IL36A Missense_Mutation p.G13W 0.14 tolerated(0.18) benign(0.03) TCGA-44-8120-01 2 116599923 116599928 GGACTG TTACCA DPP10 3'Flank 0.19 TCGA-44-8120-01 2 136873268 136873268 C T CXCR4 Missense_Mutation p.R81K 0.25 deleterious(0.03) probably_damaging(1) TCGA-44-8120-01 2 139428603 139428603 G C NXPH2 Missense_Mutation p.F228L 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-44-8120-01 2 141116459 141116459 G A LRP1B Silent p.L3730L 0.31 TCGA-44-8120-01 2 1457592 1457592 C A TPO Silent p.P203P 0.30 TCGA-44-8120-01 2 14774273 14774273 C A FAM84A Missense_Mutation p.A57D 0.17 tolerated(0.73) benign(0.017) TCGA-44-8120-01 2 166018827 166018827 G A SCN3A Missense_Mutation p.S341L 0.29 deleterious(0) benign(0.034) TCGA-44-8120-01 2 166168597 166168597 G T SCN2A Missense_Mutation p.G345C 0.30 deleterious(0) probably_damaging(0.967) TCGA-44-8120-01 2 166536137 166536137 C T CSRNP3 Silent p.V544V 0.19 TCGA-44-8120-01 2 166737189 166737189 C A TTC21B Nonsense_Mutation p.G1269* 0.18 TCGA-44-8120-01 2 166788267 166788267 C T TTC21B Splice_Site p.X298_splice 0.33 TCGA-44-8120-01 2 167262819 167262819 A G SCN7A Silent p.L1440L 0.25 TCGA-44-8120-01 2 167760103 167760103 G T XIRP2 Missense_Mutation p.Q37H 0.19 possibly_damaging(0.748) TCGA-44-8120-01 2 168105301 168105301 A G XIRP2 Missense_Mutation p.M2467V 0.19 benign(0.003) TCGA-44-8120-01 2 168106134 168106135 - A XIRP2 Frame_Shift_Ins p.Q2747Tfs*9 0.20 TCGA-44-8120-01 2 168107880 168107880 G A XIRP2 Silent p.V3326V 0.20 TCGA-44-8120-01 2 170101220 170101220 G C LRP2 Missense_Mutation p.S1138C 0.21 probably_damaging(1) TCGA-44-8120-01 2 170101407 170101407 G T LRP2 Missense_Mutation p.H1076N 0.23 benign(0.002) TCGA-44-8120-01 2 170177373 170177373 C A LRP2 Missense_Mutation p.R34L 0.21 benign(0.275) TCGA-44-8120-01 2 175213676 175213676 C G CIR1 Missense_Mutation p.G301A 0.20 tolerated_low_confidence(0.42) probably_damaging(0.94) TCGA-44-8120-01 2 176812231 176812231 G A KIAA1715 Missense_Mutation p.P228L 0.24 deleterious(0.01) benign(0.434) TCGA-44-8120-01 2 176965281 176965281 C A HOXD12 Silent p.A202A 0.17 TCGA-44-8120-01 2 17698688 17698688 G T RAD51AP2 Missense_Mutation p.P332Q 0.14 tolerated(1) benign(0) TCGA-44-8120-01 2 177034278 177034278 G A HOXD3 Missense_Mutation p.G146R 0.27 deleterious(0.04) probably_damaging(0.979) TCGA-44-8120-01 2 179391851 179391851 G T TTN Missense_Mutation p.T35955N 0.18 TCGA-44-8120-01 2 179638773 179638773 C T TTN Silent p.Q2374Q 0.25 TCGA-44-8120-01 2 179641438 179641438 C A TTN Missense_Mutation p.G1718V 0.25 TCGA-44-8120-01 2 179659794 179659794 G A TTN Missense_Mutation p.S367F 0.26 TCGA-44-8120-01 2 185798364 185798364 G A ZNF804A Missense_Mutation p.R97Q 0.22 deleterious(0) probably_damaging(0.915) TCGA-44-8120-01 2 19553252 19553252 T G OSR1 Silent p.G105G 0.24 TCGA-44-8120-01 2 196801416 196801416 T A DNAH7 Missense_Mutation p.Y1060F 0.27 deleterious(0) probably_damaging(1) TCGA-44-8120-01 2 198273136 198273136 T C SF3B1 Silent p.T358T 0.19 TCGA-44-8120-01 2 20141581 20141581 C A WDR35 Missense_Mutation p.G633V 0.45 deleterious(0) probably_damaging(0.999) TCGA-44-8120-01 2 203071908 203071908 C A SUMO1 3'UTR 0.26 TCGA-44-8120-01 2 207459573 207459573 C A ADAM23 Missense_Mutation p.L731I 0.23 tolerated(0.06) probably_damaging(0.996) TCGA-44-8120-01 2 210969025 210969025 C A KANSL1L Missense_Mutation p.G411W 0.17 deleterious(0) probably_damaging(0.99) TCGA-44-8120-01 2 211081119 211081119 G T ACADL Missense_Mutation p.A163E 0.20 deleterious(0) possibly_damaging(0.672) TCGA-44-8120-01 2 211507222 211507222 T C CPS1 Missense_Mutation p.F998L 0.23 deleterious(0.04) probably_damaging(0.999) TCGA-44-8120-01 2 216269167 216269167 G T FN1 Silent p.L1066L 0.19 TCGA-44-8120-01 2 219509387 219509387 T G ZNF142 Missense_Mutation p.M618L 0.15 tolerated(0.42) benign(0) TCGA-44-8120-01 2 220427170 220427170 C A OBSL1 Missense_Mutation p.L969F 0.16 deleterious(0.02) possibly_damaging(0.832) TCGA-44-8120-01 2 223786141 223786141 G A ACSL3 Missense_Mutation p.E317K 0.20 tolerated(0.89) benign(0.002) TCGA-44-8120-01 2 228476004 228476004 A T C2orf83 3'UTR 0.28 TCGA-44-8120-01 2 228883385 228883385 G T SPHKAP Silent p.R729R 0.22 TCGA-44-8120-01 2 237074561 237074561 G T GBX2 Missense_Mutation p.P348H 0.27 deleterious(0) probably_damaging(0.998) TCGA-44-8120-01 2 239975197 239975197 G A HDAC4 Silent p.A1058A 0.25 TCGA-44-8120-01 2 241808780 241808780 G T AGXT Splice_Site p.X120_splice 0.32 TCGA-44-8120-01 2 26502041 26502041 G T HADHB Missense_Mutation p.M223I 0.21 deleterious(0) probably_damaging(0.975) TCGA-44-8120-01 2 26677520 26677520 C A DRC1 Nonsense_Mutation p.S642* 0.23 TCGA-44-8120-01 2 27346891 27346891 T A ABHD1 Silent p.V25V 0.18 TCGA-44-8120-01 2 29294973 29294973 C T C2orf71 Missense_Mutation p.D719N 0.24 tolerated(0.08) possibly_damaging(0.617) TCGA-44-8120-01 2 31147092 31147092 G T GALNT14 Silent p.R430R 0.28 TCGA-44-8120-01 2 36706676 36706676 A C CRIM1 Missense_Mutation p.Y404S 0.25 tolerated(0.08) probably_damaging(0.996) TCGA-44-8120-01 2 37247016 37247016 C A HEATR5B Missense_Mutation p.G1347V 0.22 deleterious(0) benign(0.298) TCGA-44-8120-01 2 46574056 46574056 G T EPAS1 Missense_Mutation p.R24L 0.31 deleterious(0) probably_damaging(1) TCGA-44-8120-01 2 54365808 54365808 G T ACYP2 Silent p.V36V 0.08 TCGA-44-8120-01 2 70441501 70441501 T A TIA1 Silent p.A338A 0.24 TCGA-44-8120-01 2 71796972 71796972 G T DYSF Missense_Mutation p.G963C 0.26 deleterious(0) probably_damaging(1) TCGA-44-8120-01 2 73651855 73651855 A G ALMS1 Silent p.T354T 0.19 TCGA-44-8120-01 2 74143790 74143790 T A ACTG2 Nonsense_Mutation p.Y295* 0.12 TCGA-44-8120-01 2 74274236 74274236 C T TET3 Nonsense_Mutation p.Q263* 0.22 TCGA-44-8120-01 2 79878681 79878681 G T CTNNA2 5'UTR 0.28 TCGA-44-8120-01 2 80136779 80136779 G T CTNNA2 Missense_Mutation p.E304D 0.29 deleterious(0) possibly_damaging(0.899) TCGA-44-8120-01 2 86359531 86359531 C T PTCD3 Missense_Mutation p.H453Y 0.23 tolerated(0.39) benign(0.003) TCGA-44-8120-01 2 89246961 89246961 A T IGKV1-5 Missense_Mutation p.I70N 0.26 deleterious(0) probably_damaging(0.96) TCGA-44-8120-01 2 89459381 89459381 G C IGKV6-21 Missense_Mutation p.L66V 0.33 deleterious(0) probably_damaging(0.985) TCGA-44-8120-01 2 96933113 96933113 G T CIAO1 Missense_Mutation p.R65L 0.20 deleterious(0) probably_damaging(1) TCGA-44-8120-01 2 96933114 96933114 G T CIAO1 Silent p.R65R 0.20 TCGA-44-8120-01 2 97216332 97216332 G A ARID5A Silent p.R144R 0.18 TCGA-44-8120-01 2 98277103 98277103 C A ACTR1B Silent p.G40G 0.23 TCGA-44-8120-01 3 101573919 101573919 T A NFKBIZ Missense_Mutation p.V486E 0.58 deleterious(0) probably_damaging(0.985) TCGA-44-8120-01 3 107447683 107447683 C A BBX Silent p.S159S 0.44 TCGA-44-8120-01 3 120976175 120976175 C A STXBP5L Nonsense_Mutation p.C609* 0.28 TCGA-44-8120-01 3 121649727 121649727 A T SLC15A2 Missense_Mutation p.S532C 0.43 deleterious(0) benign(0.353) TCGA-44-8120-01 3 124153186 124153186 G T KALRN Silent p.T952T 0.50 TCGA-44-8120-01 3 129196948 129196948 G T IFT122 Nonsense_Mutation p.E464* 0.41 TCGA-44-8120-01 3 133692535 133692535 C T SLCO2A1 Silent p.E123E 0.41 TCGA-44-8120-01 3 134898764 134898764 C T EPHB1 Missense_Mutation p.R608W 0.41 deleterious(0) probably_damaging(0.997) TCGA-44-8120-01 3 1371553 1371553 C A CNTN6 Missense_Mutation p.P433Q 0.52 deleterious(0) probably_damaging(0.997) TCGA-44-8120-01 3 1415382 1415382 C A CNTN6 Silent p.P627P 0.46 TCGA-44-8120-01 3 151475176 151475176 T A AADACL2 Missense_Mutation p.Y334N 0.45 deleterious(0) probably_damaging(0.996) TCGA-44-8120-01 3 154042124 154042124 C T DHX36 Missense_Mutation p.G28R 0.48 tolerated_low_confidence(0.79) probably_damaging(0.953) TCGA-44-8120-01 3 165547328 165547328 C A BCHE Silent p.R498R 0.44 TCGA-44-8120-01 3 185161316 185161316 G T MAP3K13 Missense_Mutation p.G248V 0.37 deleterious(0) probably_damaging(1) TCGA-44-8120-01 3 197672539 197672539 C T IQCG 5'UTR 0.08 TCGA-44-8120-01 3 27759037 27759037 T A EOMES Missense_Mutation p.N529Y 0.44 deleterious(0) probably_damaging(0.949) TCGA-44-8120-01 3 3111821 3111821 C A IL5RA 3'UTR 0.41 TCGA-44-8120-01 3 36899394 36899394 C A TRANK1 Missense_Mutation p.V563L 0.45 tolerated(0.64) benign(0.004) TCGA-44-8120-01 3 37583973 37583973 G T ITGA9 Missense_Mutation p.R529M 0.40 deleterious(0) probably_damaging(1) TCGA-44-8120-01 3 38662430 38662430 G T SCN5A Missense_Mutation p.S172Y 0.36 deleterious(0.02) possibly_damaging(0.809) TCGA-44-8120-01 3 3886639 3886639 A T LRRN1 Missense_Mutation p.N105I 0.49 deleterious(0) probably_damaging(1) TCGA-44-8120-01 3 49405928 49405928 C G RHOA Missense_Mutation p.R70S 0.43 deleterious(0) probably_damaging(1) TCGA-44-8120-01 3 58193943 58193943 A T DNASE1L3 Splice_Site p.X77_splice 0.34 TCGA-44-8120-01 3 58296074 58296074 C T RPP14 Silent p.A6A 0.41 TCGA-44-8120-01 3 89528667 89528667 G T EPHA3 3'UTR 0.54 TCGA-44-8120-01 3 97887591 97887591 A C OR5H15 Silent p.G16G 0.41 TCGA-44-8120-01 4 103528835 103528835 C A NFKB1 Nonsense_Mutation p.Y718* 0.14 TCGA-44-8120-01 4 104066373 104066373 A G CENPE Missense_Mutation p.L1564P 0.04 benign(0.132) TCGA-44-8120-01 4 110394206 110394206 C T SEC24B Silent p.P308P 0.16 TCGA-44-8120-01 4 110431267 110431267 G T SEC24B Silent p.T592T 0.27 TCGA-44-8120-01 4 110791464 110791464 C A LRIT3 Missense_Mutation p.S520Y 0.17 deleterious(0) probably_damaging(0.955) TCGA-44-8120-01 4 111441506 111441506 C G ENPEP Missense_Mutation p.P571A 0.19 tolerated(0.08) benign(0.407) TCGA-44-8120-01 4 111539447 111539447 G T PITX2 Missense_Mutation p.P270H 0.19 deleterious(0.04) probably_damaging(0.999) TCGA-44-8120-01 4 122833136 122833136 G T TRPC3 Missense_Mutation p.T485N 0.14 tolerated(0.11) benign(0.001) TCGA-44-8120-01 4 138453117 138453117 T G PCDH18 Silent p.S42S 0.20 TCGA-44-8120-01 4 141789475 141789475 C A RNF150 Missense_Mutation p.E419D 0.14 tolerated_low_confidence(0.09) benign(0.005) TCGA-44-8120-01 4 142640539 142640539 G T IL15 5'UTR 0.16 TCGA-44-8120-01 4 143033801 143033801 T A INPP4B Nonsense_Mutation p.R724* 0.16 TCGA-44-8120-01 4 143181714 143181714 C A INPP4B Missense_Mutation p.A207S 0.30 tolerated(0.32) benign(0.007) TCGA-44-8120-01 4 144918727 144918727 A T GYPB Missense_Mutation p.L79H 0.23 deleterious(0) unknown(0) TCGA-44-8120-01 4 15067959 15067959 G C CPEB2 Missense_Mutation p.K1020N 0.39 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-44-8120-01 4 156135204 156135204 C T NPY2R Missense_Mutation p.P38L 0.18 tolerated(0.58) benign(0.003) TCGA-44-8120-01 4 159091775 159091775 C A FAM198B Silent p.G251G 0.26 TCGA-44-8120-01 4 16900033 16900033 C - LDB2 Frame_Shift_Del p.V26Yfs*10 0.20 TCGA-44-8120-01 4 1739011 1739011 G T TACC3 Missense_Mutation p.A598S 0.28 deleterious(0.05) probably_damaging(0.94) TCGA-44-8120-01 4 183603027 183603027 G A TENM3 Missense_Mutation p.C632Y 0.13 deleterious(0) probably_damaging(0.962) TCGA-44-8120-01 4 183714004 183714004 G A TENM3 Missense_Mutation p.G2060E 0.34 deleterious(0.01) probably_damaging(0.972) TCGA-44-8120-01 4 187192911 187192911 G T F11 Missense_Mutation p.E68D 0.13 tolerated(0.47) benign(0.003) TCGA-44-8120-01 4 3444526 3444526 C A HGFAC Missense_Mutation p.S62Y 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.467) TCGA-44-8120-01 4 367593 367593 G T ZNF141 Missense_Mutation p.C456F 0.30 deleterious(0) probably_damaging(0.985) TCGA-44-8120-01 4 39105095 39105095 G T KLHL5 Missense_Mutation p.V543L 0.22 tolerated(0.27) possibly_damaging(0.734) TCGA-44-8120-01 4 39290448 39290448 G A RFC1 Missense_Mutation p.S1127L 0.36 deleterious(0.01) benign(0.004) TCGA-44-8120-01 4 39456152 39456152 C A RPL9 Splice_Site 0.13 TCGA-44-8120-01 4 42965058 42965058 T C GRXCR1 Silent p.N178N 0.26 TCGA-44-8120-01 4 46305515 46305515 C A GABRA2 Missense_Mutation p.W273L 0.27 deleterious(0) probably_damaging(0.938) TCGA-44-8120-01 4 48994095 48994095 C G CWH43 Missense_Mutation p.R167G 0.25 deleterious(0.03) possibly_damaging(0.876) TCGA-44-8120-01 4 499507 499507 G T PIGG Missense_Mutation p.A121S 0.17 deleterious(0) probably_damaging(0.988) TCGA-44-8120-01 4 54362196 54362196 C G LNX1 Silent p.L448L 0.19 TCGA-44-8120-01 4 62910169 62910169 A T LPHN3 Splice_Site p.X1172_splice 0.21 TCGA-44-8120-01 4 62910170 62910170 G T LPHN3 Splice_Site p.X1172_splice 0.21 TCGA-44-8120-01 4 68456639 68456639 G T STAP1 Nonsense_Mutation p.G233* 0.19 TCGA-44-8120-01 4 71115134 71115134 C G CSN3 Silent p.T169T 0.11 TCGA-44-8120-01 4 73012903 73012903 C A NPFFR2 Missense_Mutation p.Q315K 0.24 tolerated(0.71) benign(0.05) TCGA-44-8120-01 4 80328605 80328605 A G GK2 Silent p.G250G 0.20 TCGA-44-8120-01 4 8230277 8230277 G A SH3TC1 Silent p.L952L 0.18 TCGA-44-8120-01 4 83748655 83748655 G - SEC31A Frame_Shift_Del p.P1053Hfs*67 0.27 TCGA-44-8120-01 4 88967894 88967894 G T PKD2 Missense_Mutation p.A474S 0.15 deleterious(0.02) possibly_damaging(0.497) TCGA-44-8120-01 4 89034588 89034588 C A ABCG2 Missense_Mutation p.G354V 0.16 tolerated(0.3) benign(0.001) TCGA-44-8120-01 4 9452190 9452190 A T DEFB131 Missense_Mutation p.I55F 0.38 deleterious(0) possibly_damaging(0.537) TCGA-44-8120-01 4 94693449 94693449 C A GRID2 Missense_Mutation p.R942S 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-8120-01 5 11346646 11346646 G A CTNND2 Missense_Mutation p.A489V 0.36 tolerated(0.07) benign(0.005) TCGA-44-8120-01 5 127514316 127514316 G T SLC12A2 Missense_Mutation p.S1012I 0.48 tolerated(0.11) possibly_damaging(0.866) TCGA-44-8120-01 5 127595131 127595131 C A FBN2 3'UTR 0.28 TCGA-44-8120-01 5 127638773 127638773 C A FBN2 Nonsense_Mutation p.E1937* 0.41 TCGA-44-8120-01 5 135290479 135290479 G A LECT2 Missense_Mutation p.T15I 0.23 tolerated(0.34) benign(0.002) TCGA-44-8120-01 5 140188674 140188674 G C PCDHA4 Silent p.T634T 0.34 TCGA-44-8120-01 5 140530550 140530550 G T PCDHB6 Missense_Mutation p.V238F 0.36 deleterious(0) benign(0.001) TCGA-44-8120-01 5 140564277 140564277 A T PCDHB16 Missense_Mutation p.R715W 0.33 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-44-8120-01 5 140581420 140581420 G T PCDHB11 Silent p.V691V 0.35 TCGA-44-8120-01 5 140725500 140725500 G C PCDHGA3 Missense_Mutation p.D634H 0.27 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-44-8120-01 5 140725937 140725937 C T PCDHGA3 Silent p.L779L 0.29 TCGA-44-8120-01 5 140744252 140744252 G T PCDHGA5 Missense_Mutation p.V119L 0.35 deleterious_low_confidence(0.02) benign(0.109) TCGA-44-8120-01 5 140755454 140755454 G T PCDHGA6 Missense_Mutation p.A602S 0.33 deleterious_low_confidence(0.02) probably_damaging(0.951) TCGA-44-8120-01 5 140755826 140755826 C A PCDHGA6 Missense_Mutation p.Q726K 0.36 deleterious_low_confidence(0.04) benign(0.009) TCGA-44-8120-01 5 140797788 140797788 T C PCDHGB7 Missense_Mutation p.V121A 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-44-8120-01 5 140801271 140801271 G T PCDHGA11 Missense_Mutation p.R159S 0.18 tolerated_low_confidence(0.39) benign(0.013) TCGA-44-8120-01 5 140801272 140801272 G T PCDHGA11 Missense_Mutation p.D160Y 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-8120-01 5 140856928 140856928 G T PCDHGC3 Silent p.L415L 0.32 TCGA-44-8120-01 5 15928465 15928465 G C FBXL7 Silent p.R198R 0.33 TCGA-44-8120-01 5 16458720 16458720 G A ZNF622 Silent p.H356H 0.29 TCGA-44-8120-01 5 169533520 169533520 G T FOXI1 Missense_Mutation p.D187Y 0.35 deleterious(0) probably_damaging(0.986) TCGA-44-8120-01 5 169677 169677 C G PLEKHG4B Silent p.P877P 0.24 TCGA-44-8120-01 5 175110375 175110375 C G HRH2 Missense_Mutation p.R47G 0.38 deleterious(0) probably_damaging(0.987) TCGA-44-8120-01 5 175111274 175111274 T A HRH2 Missense_Mutation p.S346R 0.35 tolerated(0.18) benign(0.01) TCGA-44-8120-01 5 178139917 178139917 G A ZNF354A Missense_Mutation p.A321V 0.10 deleterious(0) benign(0.284) TCGA-44-8120-01 5 24488098 24488098 T A CDH10 Missense_Mutation p.I681F 0.23 tolerated(0.36) benign(0.19) TCGA-44-8120-01 5 24593439 24593439 C T CDH10 Missense_Mutation p.R54H 0.18 deleterious(0.01) probably_damaging(0.964) TCGA-44-8120-01 5 33637804 33637804 C A ADAMTS12 Missense_Mutation p.R589L 0.26 deleterious(0) probably_damaging(0.975) TCGA-44-8120-01 5 33662059 33662059 G T ADAMTS12 Silent p.L334L 0.29 TCGA-44-8120-01 5 36111361 36111361 C A LMBRD2 Splice_Site p.X547_splice 0.16 TCGA-44-8120-01 5 39074257 39074257 C A RICTOR Missense_Mutation p.R18L 0.31 deleterious(0) benign(0.004) TCGA-44-8120-01 5 39202379 39202379 G A FYB Silent p.P238P 0.27 TCGA-44-8120-01 5 39390009 39390009 T A DAB2 Missense_Mutation p.K163I 0.18 deleterious(0) possibly_damaging(0.566) TCGA-44-8120-01 5 41199958 41199958 C T C6 Silent p.A119A 0.29 TCGA-44-8120-01 5 43609435 43609435 G T NNT Silent p.A46A 0.18 TCGA-44-8120-01 5 6750512 6750512 G T PAPD7 Nonsense_Mutation p.E336* 0.32 TCGA-44-8120-01 5 7766918 7766918 C T ADCY2 Missense_Mutation p.P738L 0.24 deleterious(0.01) benign(0.029) TCGA-44-8120-01 5 78421957 78421957 C G BHMT Silent p.A238A 0.35 TCGA-44-8120-01 5 89949034 89949034 C A GPR98 Missense_Mutation p.P1215T 0.50 possibly_damaging(0.908) TCGA-44-8120-01 6 10874377 10874377 T G GCM2 Silent p.R458R 0.40 TCGA-44-8120-01 6 121436336 121436336 C A TBC1D32 Missense_Mutation p.G1012V 0.38 deleterious(0) probably_damaging(0.999) TCGA-44-8120-01 6 125397805 125397805 C A RNF217 Silent p.I136I 0.25 TCGA-44-8120-01 6 135286415 135286415 C A HBS1L 3'UTR 0.29 TCGA-44-8120-01 6 156267947 156267947 C A MIR1202 RNA 0.29 TCGA-44-8120-01 6 160229830 160229830 G T PNLDC1 Silent p.T196T 0.32 TCGA-44-8120-01 6 160978525 160978525 C A LPA Missense_Mutation p.R1570S 0.26 deleterious(0.03) benign(0.132) TCGA-44-8120-01 6 17543168 17543168 G C CAP2 Missense_Mutation p.G368A 0.19 deleterious(0) probably_damaging(0.968) TCGA-44-8120-01 6 26414010 26414010 G T BTN3A1 3'UTR 0.44 TCGA-44-8120-01 6 26509068 26509068 C - BTN1A1 Frame_Shift_Del p.A416Efs*11 0.27 TCGA-44-8120-01 6 27420876 27420876 C A ZNF184 Missense_Mutation p.Q154H 0.25 tolerated(0.16) possibly_damaging(0.554) TCGA-44-8120-01 6 28358440 28358440 G T ZSCAN12 Missense_Mutation p.H543N 0.11 deleterious(0.03) probably_damaging(0.995) TCGA-44-8120-01 6 30525208 30525208 G A PRR3 Silent p.E29E 0.75 TCGA-44-8120-01 6 33423773 33423773 G C ZBTB9 Missense_Mutation p.S299T 0.25 tolerated(0.59) benign(0.062) TCGA-44-8120-01 6 35389655 35389655 G T PPARD Missense_Mutation p.C115F 0.50 deleterious(0) probably_damaging(0.999) TCGA-44-8120-01 6 37606422 37606422 C A MDGA1 Missense_Mutation p.R853L 0.46 deleterious(0) possibly_damaging(0.665) TCGA-44-8120-01 6 38560592 38560592 T A BTBD9 Nonsense_Mutation p.R192* 0.47 TCGA-44-8120-01 6 38790757 38790757 G T DNAH8 Missense_Mutation p.D1006Y 0.31 benign(0.003) TCGA-44-8120-01 6 43154105 43154105 G A CUL9 Missense_Mutation p.R388Q 0.16 tolerated(0.06) probably_damaging(0.996) TCGA-44-8120-01 6 49698956 49698956 C AA CRISP3 Frame_Shift_Ins p.W200Ffs*3 0.17 TCGA-44-8120-01 6 49754561 49754561 C T PGK2 Missense_Mutation p.G114S 0.29 deleterious(0) probably_damaging(0.947) TCGA-44-8120-01 6 51640627 51640627 G T PKHD1 Missense_Mutation p.H2845N 0.20 tolerated(1) benign(0.006) TCGA-44-8120-01 6 56473243 56473243 C A DST Intron 0.49 TCGA-44-8120-01 6 7378887 7378887 G T CAGE1 Missense_Mutation p.A217D 0.20 deleterious(0) probably_damaging(0.991) TCGA-44-8120-01 6 73900343 73900343 G T KCNQ5 Missense_Mutation p.R561L 0.33 deleterious(0) probably_damaging(0.997) TCGA-44-8120-01 6 74468735 74468735 G T CD109 Missense_Mutation p.G248C 0.19 deleterious(0.01) possibly_damaging(0.627) TCGA-44-8120-01 6 80751923 80751923 G T TTK 3'UTR 0.32 TCGA-44-8120-01 6 86350282 86350282 C A SYNCRIP Missense_Mutation p.G50V 0.28 deleterious(0) possibly_damaging(0.905) TCGA-44-8120-01 6 94068033 94068033 C T EPHA7 Missense_Mutation p.C310Y 0.37 deleterious(0) probably_damaging(0.931) TCGA-44-8120-01 6 97246748 97246748 T A GPR63 Missense_Mutation p.Q287L 0.25 deleterious(0.03) possibly_damaging(0.908) TCGA-44-8120-01 7 100086063 100086063 G T NYAP1 Missense_Mutation p.G240V 0.19 tolerated_low_confidence(0.06) benign(0.43) TCGA-44-8120-01 7 100304593 100304593 C A POP7 Missense_Mutation p.A47D 0.20 deleterious(0.01) possibly_damaging(0.611) TCGA-44-8120-01 7 100421852 100421852 C G EPHB4 Missense_Mutation p.W32C 0.15 deleterious(0) probably_damaging(1) TCGA-44-8120-01 7 100678307 100678307 G T MUC17 Missense_Mutation p.A1204S 0.22 unknown(0) TCGA-44-8120-01 7 100780299 100780299 C A SERPINE1 Missense_Mutation p.R369S 0.20 deleterious(0) probably_damaging(0.998) TCGA-44-8120-01 7 101559416 101559416 A G CUX1 Missense_Mutation p.T29A 0.21 deleterious(0.04) unknown(0) TCGA-44-8120-01 7 103180873 103180873 C T RELN Missense_Mutation p.C2234Y 0.23 deleterious(0) probably_damaging(0.997) TCGA-44-8120-01 7 106508423 106508423 G T PIK3CG Missense_Mutation p.Q139H 0.34 tolerated(0.12) benign(0.401) TCGA-44-8120-01 7 106508437 106508437 C G PIK3CG Missense_Mutation p.S144C 0.26 deleterious(0) possibly_damaging(0.572) TCGA-44-8120-01 7 113518472 113518472 G T PPP1R3A Missense_Mutation p.T892K 0.19 tolerated(0.16) benign(0.014) TCGA-44-8120-01 7 113558559 113558559 C A PPP1R3A Missense_Mutation p.D165Y 0.24 deleterious(0) probably_damaging(0.99) TCGA-44-8120-01 7 115580591 115580591 G T TFEC 3'UTR 0.20 TCGA-44-8120-01 7 116937844 116937844 G C WNT2 Silent p.A225A 0.27 TCGA-44-8120-01 7 120965428 120965428 A G WNT16 5'Flank 0.24 TCGA-44-8120-01 7 121652034 121652034 C A PTPRZ1 Silent p.T978T 0.23 TCGA-44-8120-01 7 127011808 127011808 C A ZNF800 3'UTR 0.26 TCGA-44-8120-01 7 128645131 128645131 C A TNPO3 Missense_Mutation p.G212V 0.24 tolerated(0.07) possibly_damaging(0.703) TCGA-44-8120-01 7 129045719 129045719 G C AHCYL2 Silent p.V395V 0.19 TCGA-44-8120-01 7 136912685 136912685 C G PTN 3'UTR 0.35 TCGA-44-8120-01 7 137151665 137151665 G T DGKI Intron 0.13 TCGA-44-8120-01 7 142008743 142008743 G C TRBV3-1 Missense_Mutation p.E72D 0.32 tolerated(0.2) benign(0.057) TCGA-44-8120-01 7 142630438 142630438 T A TRPV5 Missense_Mutation p.Q40L 0.25 deleterious(0.02) benign(0.027) TCGA-44-8120-01 7 143573464 143573464 C A FAM115A Missense_Mutation p.A80S 0.29 deleterious(0.02) possibly_damaging(0.901) TCGA-44-8120-01 7 14613846 14613846 G A DGKB Silent p.S588S 0.20 TCGA-44-8120-01 7 151859762 151859762 T G KMT2C Missense_Mutation p.T3634P 0.13 probably_damaging(0.999) TCGA-44-8120-01 7 151859764 151859764 G T KMT2C Missense_Mutation p.P3633Q 0.14 possibly_damaging(0.67) TCGA-44-8120-01 7 154747277 154747277 T A PAXIP1 Missense_Mutation p.T872S 0.24 tolerated(0.14) unknown(0) TCGA-44-8120-01 7 155295766 155295766 G C CNPY1 Silent p.L92L 0.23 TCGA-44-8120-01 7 15725877 15725877 C T MEOX2 Missense_Mutation p.A51T 0.18 tolerated(0.59) benign(0) TCGA-44-8120-01 7 157959834 157959834 C T PTPRN2 Silent p.V233V 0.28 TCGA-44-8120-01 7 20826437 20826437 C A SP8 5'UTR 0.30 TCGA-44-8120-01 7 23205404 23205404 G T KLHL7 Nonsense_Mutation p.G342* 0.23 TCGA-44-8120-01 7 24846498 24846498 G C OSBPL3 Missense_Mutation p.Q781E 0.23 tolerated(0.12) benign(0.02) TCGA-44-8120-01 7 31683474 31683474 G T CCDC129 Missense_Mutation p.R856S 0.27 deleterious(0.04) possibly_damaging(0.653) TCGA-44-8120-01 7 31918700 31918700 G T PDE1C Silent p.R172R 0.23 TCGA-44-8120-01 7 36489283 36489283 G A ANLN Missense_Mutation p.G1030R 0.21 deleterious(0.01) probably_damaging(1) TCGA-44-8120-01 7 36552859 36552859 C A AOAH Nonstop_Mutation p.*576Lext*18 0.27 TCGA-44-8120-01 7 42950256 42950256 G A C7orf25 Silent p.L140L 0.21 TCGA-44-8120-01 7 44578591 44578591 C A NPC1L1 Missense_Mutation p.D469Y 0.32 deleterious(0) possibly_damaging(0.816) TCGA-44-8120-01 7 47408829 47408829 C A TNS3 Missense_Mutation p.D472Y 0.28 deleterious(0) probably_damaging(0.966) TCGA-44-8120-01 7 51111321 51111321 C A COBL Nonsense_Mutation p.E389* 0.23 TCGA-44-8120-01 7 5167336 5167336 G T ZNF890P RNA 0.19 TCGA-44-8120-01 7 53103782 53103782 G C POM121L12 Missense_Mutation p.G140R 0.16 tolerated(0.25) benign(0.001) TCGA-44-8120-01 7 5352383 5352383 C T TNRC18 Silent p.S2713S 0.33 TCGA-44-8120-01 7 5530942 5530942 G C FBXL18 Missense_Mutation p.C640W 0.58 deleterious(0) possibly_damaging(0.774) TCGA-44-8120-01 7 63721292 63721292 G T ZNF679 Missense_Mutation p.V83L 0.15 tolerated(0.07) benign(0.002) TCGA-44-8120-01 7 77572098 77572098 G T PHTF2 Missense_Mutation p.A618S 0.17 deleterious(0) benign(0.375) TCGA-44-8120-01 7 86795914 86795914 A G DMTF1 Silent p.A75A 0.20 TCGA-44-8120-01 7 97857416 97857416 C G TECPR1 Missense_Mutation p.S808T 0.31 tolerated(0.08) probably_damaging(0.95) TCGA-44-8120-01 7 99757961 99757961 C G GAL3ST4 Missense_Mutation p.E351Q 0.32 tolerated(0.19) benign(0.408) TCGA-44-8120-01 8 103298663 103298663 T G UBR5 Missense_Mutation p.M1714L 0.25 tolerated(0.24) possibly_damaging(0.448) TCGA-44-8120-01 8 104337039 104337039 A G FZD6 Missense_Mutation p.I235M 0.40 deleterious(0) probably_damaging(0.997) TCGA-44-8120-01 8 110099855 110099855 G T TRHR Silent p.L38L 0.39 TCGA-44-8120-01 8 113349921 113349921 C A CSMD3 Missense_Mutation p.R2231L 0.05 tolerated(0.7) benign(0.243) TCGA-44-8120-01 8 113395869 113395869 T C CSMD3 Silent p.T1986T 0.42 TCGA-44-8120-01 8 113418842 113418842 C A CSMD3 Missense_Mutation p.G1907V 0.42 deleterious(0) probably_damaging(0.996) TCGA-44-8120-01 8 118541020 118541020 G T MED30 Missense_Mutation p.C103F 0.37 deleterious(0) probably_damaging(0.961) TCGA-44-8120-01 8 121219212 121219212 C A COL14A1 Missense_Mutation p.T357K 0.22 tolerated(1) possibly_damaging(0.801) TCGA-44-8120-01 8 121275149 121275149 G - COL14A1 Frame_Shift_Del p.R971Sfs*29 0.29 TCGA-44-8120-01 8 133905990 133905990 G - TG Frame_Shift_Del p.E940Kfs*26 0.30 TCGA-44-8120-01 8 139163779 139163779 T A FAM135B Missense_Mutation p.H980L 0.24 tolerated(0.7) benign(0.001) TCGA-44-8120-01 8 139263089 139263089 C A FAM135B Missense_Mutation p.L179F 0.07 deleterious(0) probably_damaging(0.939) TCGA-44-8120-01 8 14022158 14022158 C G SGCZ Missense_Mutation p.D160H 0.40 deleterious(0.04) possibly_damaging(0.471) TCGA-44-8120-01 8 2037848 2037848 C A MYOM2 Silent p.G554G 0.31 TCGA-44-8120-01 8 22864878 22864878 A T RHOBTB2 Missense_Mutation p.N396Y 0.27 deleterious(0.02) benign(0.067) TCGA-44-8120-01 8 30889713 30889713 G A PURG Silent p.L196L 0.36 TCGA-44-8120-01 8 3474270 3474270 C A CSMD1 Silent p.G353G 0.38 TCGA-44-8120-01 8 42611418 42611418 C G CHRNA6 Silent p.L308L 0.27 TCGA-44-8120-01 8 48883390 48883390 C A MCM4 Nonsense_Mutation p.S585* 0.38 TCGA-44-8120-01 8 48883391 48883391 G A MCM4 Silent p.S585S 0.38 TCGA-44-8120-01 8 51569532 51569532 C A SNTG1 Missense_Mutation p.P305T 0.41 tolerated(0.14) benign(0.119) TCGA-44-8120-01 8 55540389 55540389 C T RP1 Missense_Mutation p.A1316V 0.21 tolerated(0.22) benign(0.035) TCGA-44-8120-01 8 55540477 55540477 A T RP1 Missense_Mutation p.L1345F 0.24 tolerated(0.05) benign(0.059) TCGA-44-8120-01 8 56708608 56708608 A T TGS1 Missense_Mutation p.K480M 0.16 deleterious(0) probably_damaging(0.959) TCGA-44-8120-01 8 70585385 70585385 C A SLCO5A1 Missense_Mutation p.A756S 0.20 tolerated(0.31) possibly_damaging(0.521) TCGA-44-8120-01 8 72211904 72211904 G T EYA1 Missense_Mutation p.T203K 0.28 deleterious(0.04) probably_damaging(0.992) TCGA-44-8120-01 8 77767934 77767934 G T ZFHX4 Missense_Mutation p.R2926L 0.40 probably_damaging(0.986) TCGA-44-8120-01 8 82752200 82752200 C A SNX16 Missense_Mutation p.V8F 0.22 deleterious(0) probably_damaging(0.925) TCGA-44-8120-01 8 87591393 87591393 G C CNGB3 Silent p.T623T 0.16 TCGA-44-8120-01 8 87679167 87679167 C T CNGB3 Missense_Mutation p.G280R 0.46 deleterious(0.03) benign(0.248) TCGA-44-8120-01 8 88885284 88885284 T G DCAF4L2 Missense_Mutation p.T306P 0.20 tolerated(0.06) benign(0.222) TCGA-44-8120-01 8 89198710 89198710 A T MMP16 Silent p.T133T 0.37 TCGA-44-8120-01 8 94828657 94828658 - T TMEM67 Frame_Shift_Ins p.D990Gfs*10 0.11 TCGA-44-8120-01 9 100617241 100617241 G C FOXE1 Missense_Mutation p.A349P 0.27 deleterious(0.02) benign(0.001) TCGA-44-8120-01 9 104433248 104433248 G T GRIN3A Silent p.G482G 0.29 TCGA-44-8120-01 9 104449375 104449375 C A GRIN3A Silent p.L269L 0.26 TCGA-44-8120-01 9 112705583 112705583 G A PALM2 Missense_Mutation p.G372R 0.28 deleterious(0) probably_damaging(1) TCGA-44-8120-01 9 123898152 123898152 G T CNTRL Missense_Mutation p.Q698H 0.23 benign(0.078) TCGA-44-8120-01 9 123898153 123898153 G T CNTRL Nonsense_Mutation p.G699* 0.21 TCGA-44-8120-01 9 136509385 136509385 G T DBH Missense_Mutation p.G323W 0.29 deleterious(0) probably_damaging(0.998) TCGA-44-8120-01 9 139738943 139738943 C A C9orf172 Missense_Mutation p.A26E 0.10 tolerated(0.4) benign(0) TCGA-44-8120-01 9 140777195 140777195 G C CACNA1B Splice_Site p.X131_splice 0.34 TCGA-44-8120-01 9 22451709 22451709 G T DMRTA1 Missense_Mutation p.R438S 0.27 deleterious(0) benign(0.212) TCGA-44-8120-01 9 33387027 33387027 C G AQP7 Missense_Mutation p.V70L 0.07 deleterious(0.01) probably_damaging(0.934) TCGA-44-8120-01 9 34691127 34691127 G T CCL19 Missense_Mutation p.L4I 0.24 tolerated_low_confidence(0.06) unknown(0) TCGA-44-8120-01 9 35825243 35825243 C T FAM221B Silent p.L242L 0.36 TCGA-44-8120-01 9 37707437 37707437 G A FRMPD1 Silent p.G42G 0.34 TCGA-44-8120-01 9 43627720 43627720 C A SPATA31A6 Missense_Mutation p.D323Y 0.29 deleterious(0) probably_damaging(0.988) TCGA-44-8120-01 9 72131552 72131552 C G APBA1 Missense_Mutation p.G192A 0.44 tolerated_low_confidence(0.17) benign(0.007) TCGA-44-8120-01 9 80343570 80343571 - CCTC GNAQ Frame_Shift_Ins p.E250Gfs*8 0.22 TCGA-44-8120-01 9 84564594 84564594 A T RP11-383M4.6 Intron 0.24 TCGA-44-8120-01 9 91616190 91616190 G A S1PR3 Silent p.V25V 0.06 TCGA-44-8120-01 9 96278483 96278483 C T FAM120A Silent p.S450S 0.31 TCGA-44-8120-01 X 100548013 100548013 C A TAF7L Missense_Mutation p.Q7H 0.48 deleterious(0.05) benign(0.172) TCGA-44-8120-01 X 101409251 101409251 C A BEX5 5'UTR 0.38 TCGA-44-8120-01 X 109695255 109695255 C T RGAG1 Silent p.A470A 0.47 TCGA-44-8120-01 X 114141304 114141304 T G HTR2C Missense_Mutation p.C235G 0.54 tolerated(0.06) benign(0.01) TCGA-44-8120-01 X 119438295 119438295 A G TMEM255A Missense_Mutation p.L37P 0.51 deleterious(0) probably_damaging(1) TCGA-44-8120-01 X 125685253 125685253 C A DCAF12L1 Missense_Mutation p.G447W 0.62 deleterious(0) probably_damaging(1) TCGA-44-8120-01 X 130678154 130678154 T A OR13H1 Missense_Mutation p.L36H 0.58 deleterious(0) possibly_damaging(0.806) TCGA-44-8120-01 X 135431923 135431923 C A GPR112 Missense_Mutation p.P2020T 0.47 deleterious(0.01) benign(0) TCGA-44-8120-01 X 135741324 135741324 C - CD40LG Frame_Shift_Del p.N180Ifs*11 0.34 TCGA-44-8120-01 X 139586876 139586876 G C SOX3 Missense_Mutation p.A117G 0.46 tolerated(0.46) probably_damaging(0.964) TCGA-44-8120-01 X 142717291 142717291 C A SLITRK4 Missense_Mutation p.W545L 0.49 deleterious(0) probably_damaging(0.986) TCGA-44-8120-01 X 144905191 144905191 A T SLITRK2 Missense_Mutation p.E416D 0.57 tolerated(1) benign(0.028) TCGA-44-8120-01 X 150911821 150911821 C G CNGA2 Missense_Mutation p.I282M 0.43 deleterious(0) probably_damaging(0.984) TCGA-44-8120-01 X 151896210 151896210 T C MAGEA12 3'Flank 0.45 TCGA-44-8120-01 X 153048562 153048562 C G SRPK3 Missense_Mutation p.S246C 0.44 deleterious(0) possibly_damaging(0.884) TCGA-44-8120-01 X 154490216 154490216 A G RAB39B Missense_Mutation p.Y172H 0.61 deleterious(0.02) probably_damaging(0.962) TCGA-44-8120-01 X 2184984 2184984 C A DHRSX Silent p.G131G 0.20 TCGA-44-8120-01 X 30578217 30578217 T C CXorf21 Missense_Mutation p.T86A 0.57 tolerated(0.81) benign(0.004) TCGA-44-8120-01 X 47487500 47487500 C A CFP Splice_Site p.X135_splice 0.58 TCGA-44-8120-01 X 48780438 48780439 CC - OTUD5 3'UTR 0.32 TCGA-44-8120-01 X 53268438 53268438 C A IQSEC2 Silent p.T1018T 0.64 TCGA-44-8120-01 X 6069453 6069453 C A NLGN4X Missense_Mutation p.V19F 0.53 tolerated_low_confidence(0.26) benign(0.241) TCGA-44-8120-01 X 66788864 66788864 G T AR Intron 0.36 TCGA-44-8120-01 X 78011382 78011382 C A LPAR4 Missense_Mutation p.P339H 0.51 tolerated_low_confidence(0.06) benign(0.001) TCGA-44-8120-01 X 79279582 79279582 G T TBX22 Missense_Mutation p.R126L 0.51 deleterious(0) probably_damaging(0.999) TCGA-44-8120-01 X 80377060 80377060 T C HMGN5 5'UTR 0.65 TCGA-44-8120-01 X 85156168 85156168 C A CHM Missense_Mutation p.G424C 0.59 deleterious(0) probably_damaging(1) TCGA-44-8120-01 X 85302486 85302486 A T CHM Splice_Site p.X17_splice 0.44 TCGA-44-8120-01 X 86067926 86067926 G T DACH2 Missense_Mutation p.Q436H 0.40 deleterious(0.02) probably_damaging(0.971) TCGA-44-8120-01 X 91134116 91134116 G A PCDH11X Silent p.K959K 0.48 TCGA-44-8120-01 X 92964540 92964540 G T FAM133A Missense_Mutation p.W41L 0.58 deleterious_low_confidence(0.02) possibly_damaging(0.715) TCGA-44-8120-01 Y 14890150 14890150 A T USP9Y Missense_Mutation p.D946V 1.00 deleterious(0) benign(0.224) TCGA-44-8120-01 Y 16734015 16734015 G C NLGN4Y Missense_Mutation p.G6R 0.65 tolerated_low_confidence(0.07) unknown(0) TCGA-44-A479-01 10 117824037 117824037 C A GFRA1 Missense_Mutation p.G424C 0.19 deleterious(0.02) possibly_damaging(0.502) TCGA-44-A479-01 10 127426967 127426967 G T EDRF1 Missense_Mutation p.G645V 0.09 tolerated(0.17) benign(0.004) TCGA-44-A479-01 10 17126432 17126432 C A CUBN Silent p.T713T 0.13 TCGA-44-A479-01 10 18289689 18289689 C A SLC39A12 Nonsense_Mutation p.S565* 0.19 TCGA-44-A479-01 10 18816542 18816542 G A CACNB2 Missense_Mutation p.D324N 0.07 deleterious(0.03) probably_damaging(0.997) TCGA-44-A479-01 10 24891012 24891012 T A ARHGAP21 Silent p.S914S 0.11 TCGA-44-A479-01 10 53227550 53227550 G T PRKG1 Silent p.G182G 0.11 TCGA-44-A479-01 10 5965660 5965660 G T FBXO18 Splice_Site p.X851_splice 0.19 TCGA-44-A479-01 10 59955929 59955929 C G IPMK Missense_Mutation p.A387P 0.15 deleterious(0) probably_damaging(0.978) TCGA-44-A479-01 10 61829755 61829755 C G ANK3 Missense_Mutation p.R3628S 0.11 probably_damaging(0.95) TCGA-44-A479-01 10 64403643 64403643 C T ZNF365 Intron 0.17 TCGA-44-A479-01 10 72503418 72503418 G T ADAMTS14 Missense_Mutation p.C683F 0.21 deleterious(0) probably_damaging(0.999) TCGA-44-A479-01 10 75559952 75559952 G A ZSWIM8 Missense_Mutation p.V1617M 0.14 tolerated_low_confidence(0.1) benign(0) TCGA-44-A479-01 11 112070550 112070550 G T BCO2 Nonsense_Mutation p.G289* 0.26 TCGA-44-A479-01 11 119545905 119545905 C G PVRL1 Missense_Mutation p.G323R 0.24 deleterious(0) probably_damaging(1) TCGA-44-A479-01 11 123777551 123777551 C A OR8D4 Missense_Mutation p.P138H 0.05 tolerated(0.78) possibly_damaging(0.826) TCGA-44-A479-01 11 123894262 123894262 G T OR10G9 Silent p.P181P 0.05 TCGA-44-A479-01 11 125514032 125514032 G T CHEK1 Missense_Mutation p.G324C 0.05 deleterious(0.02) possibly_damaging(0.67) TCGA-44-A479-01 11 128638115 128638115 C - FLI1 Frame_Shift_Del p.P113Lfs*5 0.16 TCGA-44-A479-01 11 132016329 132016329 G T NTM Silent p.V107V 0.08 TCGA-44-A479-01 11 1651702 1651702 C A KRTAP5-5 Missense_Mutation p.S211Y 0.05 deleterious_low_confidence(0.01) unknown(0) TCGA-44-A479-01 11 1651703 1651703 C A KRTAP5-5 Silent p.S211S 0.05 TCGA-44-A479-01 11 22397611 22397611 G T SLC17A6 Missense_Mutation p.V420L 0.11 deleterious(0.01) benign(0.139) TCGA-44-A479-01 11 30516925 30516925 C A MPPED2 Missense_Mutation p.V152F 0.24 deleterious(0.03) probably_damaging(0.992) TCGA-44-A479-01 11 3405445 3405445 C A TSSC2 RNA 0.44 TCGA-44-A479-01 11 44297173 44297173 G T ALX4 Missense_Mutation p.P168T 0.31 deleterious(0.01) probably_damaging(0.992) TCGA-44-A479-01 11 45275830 45275830 G A SYT13 Missense_Mutation p.R179C 0.37 tolerated(0.21) benign(0.001) TCGA-44-A479-01 11 45671729 45671729 C A CHST1 Missense_Mutation p.D249Y 0.34 deleterious(0.03) probably_damaging(0.999) TCGA-44-A479-01 11 45671780 45671780 G C CHST1 Missense_Mutation p.L232V 0.13 deleterious(0) probably_damaging(0.999) TCGA-44-A479-01 11 46920997 46920997 T C LRP4 Missense_Mutation p.E163G 0.25 tolerated(0.35) benign(0.01) TCGA-44-A479-01 11 46920998 46920998 C T LRP4 Missense_Mutation p.E163K 0.25 tolerated(0.86) benign(0.143) TCGA-44-A479-01 11 48238491 48238491 G A OR4B1 Missense_Mutation p.V44I 0.28 tolerated(0.4) benign(0.021) TCGA-44-A479-01 11 51515609 51515609 G T OR4C46 Missense_Mutation p.G110C 0.09 deleterious_low_confidence(0) benign(0.353) TCGA-44-A479-01 11 5345428 5345428 C A OR51B2 Missense_Mutation p.V34L 0.11 tolerated(1) benign(0.002) TCGA-44-A479-01 11 55135693 55135693 G T OR4A15 Missense_Mutation p.D112Y 0.13 deleterious_low_confidence(0) possibly_damaging(0.591) TCGA-44-A479-01 11 56085828 56085828 G T OR8K3 Nonsense_Mutation p.G16* 0.05 TCGA-44-A479-01 11 6023772 6023772 C A OR56A4 Missense_Mutation p.V203F 0.16 tolerated(0.08) benign(0.097) TCGA-44-A479-01 11 62288078 62288078 C A AHNAK Missense_Mutation p.G4604V 0.07 probably_damaging(1) TCGA-44-A479-01 11 7674538 7674538 G T PPFIBP2 3'UTR 0.16 TCGA-44-A479-01 11 85593585 85593585 G T CCDC83 Missense_Mutation p.W70C 0.24 tolerated(0.05) probably_damaging(0.986) TCGA-44-A479-01 11 86518702 86518702 G T PRSS23 Missense_Mutation p.G6V 0.06 tolerated(0.57) benign(0.06) TCGA-44-A479-01 12 1009688 1009688 G T WNK1 Missense_Mutation p.Q2165H 0.11 deleterious(0.04) probably_damaging(0.987) TCGA-44-A479-01 12 105420500 105420500 G C ALDH1L2 Missense_Mutation p.R847G 0.05 deleterious(0) possibly_damaging(0.882) TCGA-44-A479-01 12 110783143 110783143 G T ATP2A2 Silent p.A899A 0.09 TCGA-44-A479-01 12 111348863 111348863 G A MYL2 3'UTR 0.14 TCGA-44-A479-01 12 114404167 114404167 T A RBM19 5'Flank 0.20 TCGA-44-A479-01 12 118198870 118198870 C T KSR2 Missense_Mutation p.S311N 0.10 deleterious(0.02) benign(0.062) TCGA-44-A479-01 12 121686512 121686512 C A CAMKK2 Missense_Mutation p.G450V 0.09 deleterious(0) possibly_damaging(0.769) TCGA-44-A479-01 12 122064794 122064794 G T ORAI1 Silent p.P49P 0.14 TCGA-44-A479-01 12 123463485 123463485 C T OGFOD2 Silent p.A179A 0.26 TCGA-44-A479-01 12 20833302 20833302 A T PDE3A 3'UTR 0.10 TCGA-44-A479-01 12 22035700 22035700 C A ABCC9 Missense_Mutation p.K673N 0.06 deleterious(0.01) benign(0.255) TCGA-44-A479-01 12 29464845 29464845 C A FAR2 Missense_Mutation p.T306K 0.14 deleterious(0) probably_damaging(0.997) TCGA-44-A479-01 12 33579269 33579269 T A SYT10 Missense_Mutation p.T105S 0.08 tolerated(0.5) benign(0.008) TCGA-44-A479-01 12 33579274 33579274 G A SYT10 Missense_Mutation p.A103V 0.09 tolerated(0.17) benign(0.07) TCGA-44-A479-01 12 34179118 34179118 C T ALG10 Silent p.F230F 0.11 TCGA-44-A479-01 12 402090 402090 C A KDM5A Missense_Mutation p.K1567N 0.07 tolerated(0.15) probably_damaging(0.95) TCGA-44-A479-01 12 41967268 41967268 A G PDZRN4 Missense_Mutation p.D896G 0.05 deleterious(0) probably_damaging(0.998) TCGA-44-A479-01 12 42781256 42781256 A T PPHLN1 Splice_Site p.X190_splice 0.20 TCGA-44-A479-01 12 48741850 48741850 C G ZNF641 Silent p.A22A 0.20 TCGA-44-A479-01 12 49579190 49579190 C T TUBA1A Missense_Mutation p.R320H 0.04 deleterious_low_confidence(0.03) probably_damaging(0.97) TCGA-44-A479-01 12 50349277 50349277 G A AQP2 Silent p.L234L 0.09 TCGA-44-A479-01 12 55886198 55886198 C T OR6C68 Silent p.L13L 0.11 TCGA-44-A479-01 12 57866468 57866468 C A ARHGAP9 Silent p.V676V 0.24 TCGA-44-A479-01 12 57881752 57881752 G C MARS 5'UTR 0.10 TCGA-44-A479-01 12 58014086 58014086 C T SLC26A10 Missense_Mutation p.P28L 0.04 tolerated_low_confidence(0.06) benign(0.001) TCGA-44-A479-01 12 6138619 6138619 G T VWF Missense_Mutation p.H952Q 0.11 tolerated(0.51) possibly_damaging(0.757) TCGA-44-A479-01 12 64456793 64456793 G C SRGAP1 Missense_Mutation p.D300H 0.13 deleterious(0.01) benign(0.146) TCGA-44-A479-01 12 91502627 91502627 G T LUM Missense_Mutation p.P44T 0.11 deleterious(0) probably_damaging(1) TCGA-44-A479-01 12 92814926 92814926 G T CLLU1OS Missense_Mutation p.P56T 0.20 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-44-A479-01 13 101712311 101712311 C G NALCN Missense_Mutation p.Q1588H 0.11 tolerated(0.18) benign(0.001) TCGA-44-A479-01 13 102029383 102029383 C A NALCN Missense_Mutation p.D134Y 0.22 tolerated(1) possibly_damaging(0.666) TCGA-44-A479-01 13 103527950 103527951 - T ERCC5 Frame_Shift_Ins p.L1088Ffs*11 0.10 TCGA-44-A479-01 13 113742089 113742089 G T MCF2L Silent p.A888A 0.07 TCGA-44-A479-01 13 28901629 28901629 C T FLT1 Silent p.K922K 0.24 TCGA-44-A479-01 13 36046601 36046601 C G NBEA Silent p.L2171L 0.17 TCGA-44-A479-01 13 86369536 86369536 G T SLITRK6 Missense_Mutation p.L370I 0.10 deleterious(0.01) possibly_damaging(0.849) TCGA-44-A479-01 14 105418020 105418020 C A AHNAK2 Missense_Mutation p.M1256I 0.11 benign(0.001) TCGA-44-A479-01 14 20296432 20296432 C A OR4N2 Missense_Mutation p.H275Q 0.08 deleterious(0.01) possibly_damaging(0.483) TCGA-44-A479-01 14 21052353 21052353 T G RNASE11 Missense_Mutation p.D94A 0.04 tolerated(0.11) benign(0.062) TCGA-44-A479-01 14 21109485 21109485 C T OR6S1 Silent p.A122A 0.09 TCGA-44-A479-01 14 23847615 23847615 G T CMTM5 Missense_Mutation p.A62S 0.17 deleterious(0) probably_damaging(0.986) TCGA-44-A479-01 14 31917363 31917363 C A DTD2 Missense_Mutation p.G160V 0.19 deleterious(0) probably_damaging(1) TCGA-44-A479-01 14 51134714 51134714 G T SAV1 5'UTR 0.20 TCGA-44-A479-01 14 65543199 65543199 T A MAX Missense_Mutation p.S160C 0.07 deleterious_low_confidence(0) possibly_damaging(0.757) TCGA-44-A479-01 14 73959804 73959804 G C HEATR4 Missense_Mutation p.P937R 0.20 tolerated(0.23) benign(0.001) TCGA-44-A479-01 14 75265301 75265302 - T YLPM1 Frame_Shift_Ins p.Q1101Lfs*31 0.11 TCGA-44-A479-01 14 75329671 75329671 G T PROX2 Intron 0.12 TCGA-44-A479-01 14 94088706 94088706 C T UNC79 Silent p.N1532N 0.15 TCGA-44-A479-01 15 101425496 101425496 G - ALDH1A3 Frame_Shift_Del p.E42Nfs*53 0.14 TCGA-44-A479-01 15 24922480 24922480 G A NPAP1 Missense_Mutation p.G489E 0.10 tolerated(0.37) possibly_damaging(0.55) TCGA-44-A479-01 15 28502359 28502359 G A HERC2 Missense_Mutation p.P789S 0.12 possibly_damaging(0.622) TCGA-44-A479-01 15 33988555 33988555 G A RYR3 Silent p.A1999A 0.15 TCGA-44-A479-01 15 44059003 44059003 G T PDIA3 Missense_Mutation p.S308I 0.10 tolerated(0.19) benign(0.135) TCGA-44-A479-01 15 48053949 48053949 G T SEMA6D Splice_Site p.X180_splice 0.21 TCGA-44-A479-01 15 52342238 52342238 C G MAPK6 Missense_Mutation p.L202V 0.07 tolerated(0.06) probably_damaging(0.996) TCGA-44-A479-01 15 56386666 56386666 T A RFX7 Missense_Mutation p.Q1087L 0.21 deleterious_low_confidence(0) possibly_damaging(0.648) TCGA-44-A479-01 15 68609660 68609660 C T ITGA11 Silent p.R886R 0.07 TCGA-44-A479-01 15 74630319 74630319 C A CYP11A1 Missense_Mutation p.Q520H 0.09 tolerated_low_confidence(0.05) benign(0.007) TCGA-44-A479-01 15 82335554 82335554 C T MEX3B Missense_Mutation p.E553K 0.15 tolerated(0.23) benign(0.013) TCGA-44-A479-01 15 88679700 88679700 G T NTRK3 Missense_Mutation p.Q255K 0.08 tolerated(0.89) benign(0.038) TCGA-44-A479-01 15 90020380 90020380 C A RHCG Missense_Mutation p.Q390H 0.11 deleterious(0) probably_damaging(0.996) TCGA-44-A479-01 16 1279582 1279582 G A TPSB2 Missense_Mutation p.A73V 0.16 deleterious(0.01) benign(0.354) TCGA-44-A479-01 16 2263681 2263681 G T PGP 3'UTR 0.11 TCGA-44-A479-01 16 24564863 24564863 G T RBBP6 Silent p.L111L 0.06 TCGA-44-A479-01 16 24564864 24564864 G T RBBP6 Missense_Mutation p.A112S 0.06 deleterious_low_confidence(0.04) benign(0.339) TCGA-44-A479-01 16 3293247 3293247 G A MEFV Missense_Mutation p.S747F 0.20 deleterious(0.04) benign(0.05) TCGA-44-A479-01 16 422062 422062 C A TMEM8A Missense_Mutation p.W747C 0.25 deleterious(0.02) benign(0.167) TCGA-44-A479-01 16 55562321 55562321 G T LPCAT2 Missense_Mutation p.G115V 0.07 tolerated(0.52) benign(0.13) TCGA-44-A479-01 16 56439145 56439145 C A AMFR Silent p.V226V 0.11 TCGA-44-A479-01 16 71012867 71012867 C T HYDIN Missense_Mutation p.D1530N 0.10 benign(0.099) TCGA-44-A479-01 16 85840373 85840373 A G COX4I1 Missense_Mutation p.K135E 0.23 tolerated(1) benign(0.002) TCGA-44-A479-01 17 11784660 11784660 G A DNAH9 Missense_Mutation p.R3579K 0.16 benign(0.117) TCGA-44-A479-01 17 38122659 38122659 G T GSDMA Missense_Mutation p.A121S 0.11 tolerated(0.82) benign(0.009) TCGA-44-A479-01 17 41063323 41063323 C A G6PC Silent p.V318V 0.05 TCGA-44-A479-01 17 42429563 42429563 C T GRN Nonsense_Mutation p.Q454* 0.06 TCGA-44-A479-01 17 46690737 46690738 - T HOXB8 Frame_Shift_Ins p.E187Rfs*117 0.10 TCGA-44-A479-01 17 58234014 58234014 G A CA4 Missense_Mutation p.R69H 0.13 deleterious(0.05) benign(0.003) TCGA-44-A479-01 17 58980033 58980033 C G BCAS3 Missense_Mutation p.S264C 0.25 deleterious(0) probably_damaging(0.998) TCGA-44-A479-01 17 65026640 65026640 T A CACNG4 Missense_Mutation p.S168R 0.09 tolerated(0.1) possibly_damaging(0.826) TCGA-44-A479-01 17 67039722 67039722 T A ABCA9 Silent p.T236T 0.15 TCGA-44-A479-01 17 68128525 68128525 T C KCNJ16 Silent p.H99H 0.17 TCGA-44-A479-01 17 68172447 68172447 C G KCNJ2 Missense_Mutation p.R423G 0.13 deleterious_low_confidence(0.03) benign(0.061) TCGA-44-A479-01 17 74934157 74934157 C G MGAT5B Missense_Mutation p.P515A 0.25 deleterious(0.01) probably_damaging(1) TCGA-44-A479-01 17 7578550 7578550 G A TP53 Missense_Mutation p.S127F 0.31 deleterious(0) probably_damaging(1) TCGA-44-A479-01 18 39575887 39575887 G C PIK3C3 Missense_Mutation p.A274P 0.19 deleterious(0.01) probably_damaging(0.944) TCGA-44-A479-01 18 44013280 44013280 C A RNF165 Silent p.G63G 0.21 TCGA-44-A479-01 18 59221667 59221667 G T CDH20 Silent p.T715T 0.23 TCGA-44-A479-01 18 61306523 61306523 C G SERPINB4 Missense_Mutation p.A222P 0.11 deleterious(0.02) possibly_damaging(0.905) TCGA-44-A479-01 19 1054593 1054593 G T ABCA7 Missense_Mutation p.G1251C 0.11 tolerated(0.72) probably_damaging(0.994) TCGA-44-A479-01 19 11141499 11141499 G C SMARCA4 Missense_Mutation p.G1159A 0.27 probably_damaging(1) TCGA-44-A479-01 19 1207162 1207162 A T STK11 Nonsense_Mutation p.K84* 0.14 TCGA-44-A479-01 19 16035675 16035675 C T CYP4F11 Silent p.L181L 0.21 TCGA-44-A479-01 19 20026195 20026195 A G ZNF93 Missense_Mutation p.Y37C 0.04 deleterious(0) possibly_damaging(0.802) TCGA-44-A479-01 19 22154465 22154465 G T ZNF208 Missense_Mutation p.T1124K 0.12 tolerated(0.43) benign(0.001) TCGA-44-A479-01 19 22940650 22940650 G T ZNF99 Missense_Mutation p.N687K 0.14 tolerated(0.37) benign(0.003) TCGA-44-A479-01 19 23328700 23328700 A C ZNF730 Missense_Mutation p.K285T 0.11 tolerated(0.08) probably_damaging(0.985) TCGA-44-A479-01 19 31768093 31768093 G T TSHZ3 Missense_Mutation p.S869Y 0.05 deleterious(0) possibly_damaging(0.77) TCGA-44-A479-01 19 34838870 34838870 A G KIAA0355 Silent p.P870P 0.12 TCGA-44-A479-01 19 36580087 36580087 G T WDR62 Missense_Mutation p.G613C 0.18 deleterious(0.03) possibly_damaging(0.605) TCGA-44-A479-01 19 38229860 38229860 C T ZNF573 Missense_Mutation p.G511R 0.09 tolerated(0.08) probably_damaging(0.982) TCGA-44-A479-01 19 41601807 41601807 G T CYP2A13 Silent p.T482T 0.23 TCGA-44-A479-01 19 43683302 43683302 A G PSG5 Intron 0.09 TCGA-44-A479-01 19 47524413 47524413 C A NPAS1 Missense_Mutation p.P37T 0.29 tolerated(0.18) benign(0.002) TCGA-44-A479-01 19 48734112 48734112 C T CARD8 Missense_Mutation p.G232S 0.16 deleterious(0.01) probably_damaging(1) TCGA-44-A479-01 19 51191244 51191244 C A SHANK1 Silent p.T748T 0.17 TCGA-44-A479-01 19 51220041 51220041 C A SHANK1 Missense_Mutation p.G46W 0.24 probably_damaging(0.979) TCGA-44-A479-01 19 52496195 52496195 C A ZNF615 Missense_Mutation p.D723Y 0.13 deleterious(0.04) possibly_damaging(0.761) TCGA-44-A479-01 19 52824860 52824860 A G ZNF480 Silent p.A119A 0.09 TCGA-44-A479-01 19 54803210 54803210 A G LILRA3 Missense_Mutation p.L156P 0.08 deleterious(0) probably_damaging(1) TCGA-44-A479-01 19 57642003 57642003 C A USP29 Missense_Mutation p.Q654K 0.19 tolerated(0.28) possibly_damaging(0.534) TCGA-44-A479-01 19 58437916 58437916 T A ZNF418 Nonsense_Mutation p.K545* 0.13 TCGA-44-A479-01 19 59061800 59061800 G A TRIM28 Missense_Mutation p.M796I 0.09 deleterious(0.01) benign(0.006) TCGA-44-A479-01 19 9071295 9071295 C A MUC16 Missense_Mutation p.S5384I 0.22 unknown(0) TCGA-44-A479-01 1 110020608 110020608 A G SYPL2 Missense_Mutation p.M209V 0.17 tolerated(0.17) possibly_damaging(0.696) TCGA-44-A479-01 1 110022120 110022120 G T SYPL2 Missense_Mutation p.G257C 0.08 deleterious(0.02) possibly_damaging(0.667) TCGA-44-A479-01 1 110255340 110255340 C A GSTM5 Intron 0.08 TCGA-44-A479-01 1 115217454 115217454 A T AMPD1 Nonsense_Mutation p.C606* 0.14 TCGA-44-A479-01 1 120057225 120057225 T C HSD3B1 Missense_Mutation p.L360P 0.23 deleterious(0) possibly_damaging(0.873) TCGA-44-A479-01 1 14142987 14142987 G T PRDM2 Missense_Mutation p.R1701M 0.08 unknown(0) TCGA-44-A479-01 1 148932887 148932887 G T RP11-14N7.2 RNA 0.04 TCGA-44-A479-01 1 152191362 152191362 G T HRNR Silent p.R915R 0.21 TCGA-44-A479-01 1 153967592 153967592 G T NUP210L Silent p.T1817T 0.10 TCGA-44-A479-01 1 157668362 157668362 C T FCRL3 Missense_Mutation p.G37E 0.23 deleterious(0) possibly_damaging(0.887) TCGA-44-A479-01 1 158227563 158227563 C A CD1A 3'UTR 0.07 TCGA-44-A479-01 1 161681159 161681159 G T FCRLA Missense_Mutation p.V155L 0.33 tolerated(0.24) possibly_damaging(0.515) TCGA-44-A479-01 1 166135280 166135280 C A FAM78B Missense_Mutation p.G69V 0.12 deleterious(0) probably_damaging(0.999) TCGA-44-A479-01 1 169582859 169582859 C T SELP Missense_Mutation p.C185Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-44-A479-01 1 170705230 170705230 C A PRRX1 Missense_Mutation p.P214H 0.06 deleterious(0) benign(0.174) TCGA-44-A479-01 1 176668542 176668543 - G PAPPA2 Frame_Shift_Ins p.V1020Gfs*7 0.17 TCGA-44-A479-01 1 177930729 177930729 C A SEC16B Missense_Mutation p.Q261H 0.13 deleterious(0.02) benign(0.077) TCGA-44-A479-01 1 179631350 179631350 G T TDRD5 Missense_Mutation p.A812S 0.21 tolerated(0.17) benign(0.236) TCGA-44-A479-01 1 182544342 182544342 T A RNASEL 3'UTR 0.33 TCGA-44-A479-01 1 190203558 190203558 A T BRINP3 Missense_Mutation p.L223Q 0.07 deleterious(0) probably_damaging(0.997) TCGA-44-A479-01 1 203098202 203098202 A T ADORA1 Missense_Mutation p.H78L 0.24 deleterious(0) benign(0.009) TCGA-44-A479-01 1 203743032 203743032 G A LAX1 Silent p.E140E 0.19 TCGA-44-A479-01 1 214557497 214557497 C G PTPN14 Silent p.P567P 0.08 TCGA-44-A479-01 1 216074237 216074237 G T USH2A Silent p.G2437G 0.12 TCGA-44-A479-01 1 216595629 216595629 A G USH2A Missense_Mutation p.I17T 0.23 benign(0.001) TCGA-44-A479-01 1 226736724 226736724 G T C1orf95 Missense_Mutation p.G40V 0.27 deleterious(0) probably_damaging(0.999) TCGA-44-A479-01 1 237608790 237608790 G T RYR2 Silent p.R420R 0.23 TCGA-44-A479-01 1 237754186 237754186 G T RYR2 Missense_Mutation p.G1352C 0.27 benign(0.319) TCGA-44-A479-01 1 237754187 237754187 G T RYR2 Missense_Mutation p.G1352V 0.27 benign(0.051) TCGA-44-A479-01 1 246784846 246784846 G T CNST Silent p.A165A 0.23 TCGA-44-A479-01 1 248636867 248636867 G T OR2T3 Silent p.A72A 0.14 TCGA-44-A479-01 1 24981384 24981384 C T SRRM1 Missense_Mutation p.S360L 0.15 unknown(0) TCGA-44-A479-01 1 40704819 40704819 T A RLF Missense_Mutation p.V1482E 0.10 tolerated(1) benign(0.003) TCGA-44-A479-01 1 43664270 43664270 G C WDR65 Missense_Mutation p.D461H 0.17 deleterious(0) probably_damaging(0.972) TCGA-44-A479-01 1 57202800 57202800 T C C1orf168 Missense_Mutation p.I585V 0.08 tolerated(0.18) benign(0.071) TCGA-44-A479-01 1 7725033 7725033 G T CAMTA1 Missense_Mutation p.G809V 0.12 deleterious_low_confidence(0) possibly_damaging(0.632) TCGA-44-A479-01 1 82436173 82436173 G T LPHN2 Missense_Mutation p.G953V 0.18 deleterious(0) probably_damaging(0.954) TCGA-44-A479-01 1 86172125 86172125 C A ZNHIT6 Missense_Mutation p.S241I 0.07 deleterious(0) probably_damaging(0.998) TCGA-44-A479-01 1 89607332 89607332 C A GBP7 Splice_Site p.X456_splice 0.15 TCGA-44-A479-01 20 16348093 16348093 G A KIF16B Missense_Mutation p.P1293S 0.10 tolerated_low_confidence(0.74) benign(0.02) TCGA-44-A479-01 20 24944498 24944498 C T APMAP Missense_Mutation p.G401D 0.13 deleterious(0) probably_damaging(0.997) TCGA-44-A479-01 20 30370062 30370062 C T TPX2 Silent p.P355P 0.24 TCGA-44-A479-01 20 31890868 31890868 C G BPIFB1 Missense_Mutation p.F376L 0.30 tolerated(0.06) possibly_damaging(0.889) TCGA-44-A479-01 20 37179747 37179747 A C RALGAPB Missense_Mutation p.N1015H 0.08 tolerated(0.08) possibly_damaging(0.861) TCGA-44-A479-01 20 37400434 37400434 G T ACTR5 Missense_Mutation p.G600V 0.17 tolerated_low_confidence(0.32) unknown(0) TCGA-44-A479-01 20 40980822 40980822 C A PTPRT Missense_Mutation p.G555V 0.11 deleterious(0) possibly_damaging(0.746) TCGA-44-A479-01 20 43926908 43926908 C G MATN4 Missense_Mutation p.R443P 0.23 benign(0.262) TCGA-44-A479-01 20 44983789 44983789 G C SLC35C2 Missense_Mutation p.A167G 0.22 deleterious(0.01) benign(0.348) TCGA-44-A479-01 20 47244086 47244086 C A PREX1 Missense_Mutation p.R1646L 0.14 deleterious(0) possibly_damaging(0.491) TCGA-44-A479-01 20 49626618 49626618 C T KCNG1 Silent p.L86L 0.24 TCGA-44-A479-01 20 5282815 5282815 C A PROKR2 Missense_Mutation p.K342N 0.24 deleterious(0.02) benign(0.016) TCGA-44-A479-01 20 56099258 56099258 C - CTCFL Frame_Shift_Del p.A2Qfs*20 0.18 TCGA-44-A479-01 22 16287667 16287667 C A POTEH Missense_Mutation p.R73S 0.04 deleterious_low_confidence(0) benign(0.219) TCGA-44-A479-01 22 16287668 16287668 C A POTEH Missense_Mutation p.R73M 0.04 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-44-A479-01 22 26695106 26695106 A G SEZ6L Missense_Mutation p.H440R 0.48 tolerated(0.2) benign(0.071) TCGA-44-A479-01 22 30857594 30857594 C A SEC14L3 Missense_Mutation p.G287C 0.20 deleterious(0) possibly_damaging(0.753) TCGA-44-A479-01 22 37533698 37533698 G T IL2RB Missense_Mutation p.Q156K 0.11 tolerated(0.07) benign(0.254) TCGA-44-A479-01 22 44234846 44234846 C A SULT4A1 Missense_Mutation p.D137Y 0.28 deleterious(0) probably_damaging(1) TCGA-44-A479-01 22 50316929 50316929 T G CRELD2 Missense_Mutation p.F295V 0.20 deleterious(0) benign(0.268) TCGA-44-A479-01 2 101192911 101192911 C T PDCL3 Missense_Mutation p.R225W 0.09 tolerated(0.06) benign(0.077) TCGA-44-A479-01 2 101192912 101192912 G T PDCL3 Missense_Mutation p.R225L 0.09 deleterious(0.03) benign(0.082) TCGA-44-A479-01 2 121742294 121742294 G C GLI2 Missense_Mutation p.R644T 0.22 deleterious(0.02) benign(0.07) TCGA-44-A479-01 2 157182363 157182363 T A NR4A2 Missense_Mutation p.T564S 0.18 tolerated(0.62) benign(0.018) TCGA-44-A479-01 2 163279950 163279950 T C KCNH7 Missense_Mutation p.K684E 0.11 deleterious(0) possibly_damaging(0.542) TCGA-44-A479-01 2 165551079 165551079 C A COBLL1 Missense_Mutation p.Q979H 0.12 deleterious(0.02) possibly_damaging(0.789) TCGA-44-A479-01 2 1670167 1670167 C T PXDN Silent p.P370P 0.11 TCGA-44-A479-01 2 168107609 168107609 C A XIRP2 Missense_Mutation p.P3236H 0.10 probably_damaging(1) TCGA-44-A479-01 2 179398165 179398165 T A TTN Missense_Mutation p.T34393S 0.25 TCGA-44-A479-01 2 179425995 179425995 A T TTN Silent p.I28288I 0.07 TCGA-44-A479-01 2 185803584 185803584 G T ZNF804A Missense_Mutation p.R1154M 0.09 deleterious(0) probably_damaging(0.984) TCGA-44-A479-01 2 189870959 189870959 G T COL3A1 Missense_Mutation p.G1023C 0.12 probably_damaging(1) TCGA-44-A479-01 2 196651868 196651868 G T DNAH7 Missense_Mutation p.L3582M 0.09 deleterious(0) probably_damaging(1) TCGA-44-A479-01 2 207173213 207173213 G T ZDBF2 Missense_Mutation p.G1321C 0.20 deleterious(0) benign(0.284) TCGA-44-A479-01 2 207814383 207814383 G T CPO Silent p.V37V 0.23 TCGA-44-A479-01 2 208632199 208632199 C A FZD5 Missense_Mutation p.G422V 0.23 deleterious(0) probably_damaging(0.986) TCGA-44-A479-01 2 218669320 218669320 G C TNS1 Missense_Mutation p.F1690L 0.22 deleterious(0) probably_damaging(0.999) TCGA-44-A479-01 2 226273760 226273760 T A NYAP2 Missense_Mutation p.L55Q 0.17 tolerated(0.38) benign(0.309) TCGA-44-A479-01 2 227731981 227731981 G A RHBDD1 Silent p.P171P 0.05 TCGA-44-A479-01 2 230683159 230683160 AT - TRIP12 Frame_Shift_Del p.I459* 0.10 TCGA-44-A479-01 2 233394809 233394809 C T CHRND Silent p.I260I 0.21 TCGA-44-A479-01 2 238271923 238271923 G T COL6A3 Missense_Mutation p.D2012E 0.04 possibly_damaging(0.9) TCGA-44-A479-01 2 32117106 32117106 C A MEMO1 Missense_Mutation p.D179Y 0.21 deleterious(0) probably_damaging(0.987) TCGA-44-A479-01 2 33477873 33477873 G T LTBP1 Missense_Mutation p.W710L 0.13 deleterious(0) probably_damaging(0.992) TCGA-44-A479-01 2 50780103 50780103 G C NRXN1 Missense_Mutation p.P501A 0.09 tolerated(0.15) benign(0.24) TCGA-44-A479-01 2 54115932 54115932 C - PSME4 Frame_Shift_Del p.K1439Nfs*14 0.19 TCGA-44-A479-01 2 63176028 63176028 A G EHBP1 Missense_Mutation p.T718A 0.15 tolerated_low_confidence(0.37) benign(0.001) TCGA-44-A479-01 2 74902762 74902762 G T SEMA4F Splice_Site p.X494_splice 0.07 TCGA-44-A479-01 2 89384719 89384719 G C IGKV3-15 Missense_Mutation p.S100C 0.17 deleterious(0.01) benign(0.416) TCGA-44-A479-01 2 95494789 95494789 C G ANKRD20A8P RNA 0.22 TCGA-44-A479-01 2 99681428 99681428 C A TSGA10 Missense_Mutation p.D460Y 0.12 deleterious(0) probably_damaging(0.922) TCGA-44-A479-01 3 112357214 112357214 G T CCDC80 Missense_Mutation p.S513R 0.14 tolerated(0.14) benign(0.007) TCGA-44-A479-01 3 137807237 137807237 T C DZIP1L Missense_Mutation p.E328G 0.29 deleterious(0) possibly_damaging(0.906) TCGA-44-A479-01 3 156395468 156395468 G T TIPARP 5'UTR 0.09 TCGA-44-A479-01 3 49084562 49084562 C A QRICH1 Missense_Mutation p.A486S 0.10 deleterious(0) probably_damaging(0.941) TCGA-44-A479-01 3 52022570 52022570 G A ACY1 Missense_Mutation p.D318N 0.11 tolerated(0.09) benign(0.05) TCGA-44-A479-01 3 9486767 9486767 A C SETD5 Missense_Mutation p.N408T 0.09 deleterious(0) probably_damaging(0.995) TCGA-44-A479-01 3 97731363 97731363 G T GABRR3 Intron 0.12 TCGA-44-A479-01 3 97983296 97983296 G T OR5H6 Missense_Mutation p.M56I 0.15 deleterious(0.03) benign(0.002) TCGA-44-A479-01 4 104510807 104510807 C A TACR3 3'UTR 0.11 TCGA-44-A479-01 4 13606501 13606501 C A BOD1L1 Missense_Mutation p.D675Y 0.12 probably_damaging(0.982) TCGA-44-A479-01 4 158284166 158284166 C A GRIA2 Missense_Mutation p.N874K 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.598) TCGA-44-A479-01 4 158284179 158284179 G A GRIA2 Missense_Mutation p.E879K 0.07 deleterious_low_confidence(0.01) benign(0.288) TCGA-44-A479-01 4 26491794 26491794 C A CCKAR Missense_Mutation p.Q32H 0.21 tolerated(0.15) benign(0.002) TCGA-44-A479-01 4 3317849 3317849 G T RGS12 5'UTR 0.06 TCGA-44-A479-01 4 46125860 46125860 A G GABRG1 Missense_Mutation p.V24A 0.07 tolerated(0.49) benign(0.002) TCGA-44-A479-01 4 6082017 6082017 G T JAKMIP1 Missense_Mutation p.A375E 0.17 tolerated(0.26) benign(0.226) TCGA-44-A479-01 4 6623031 6623031 G T MAN2B2 3'UTR 0.12 TCGA-44-A479-01 4 81967389 81967389 A G BMP3 Missense_Mutation p.K272E 0.07 tolerated(0.23) benign(0.06) TCGA-44-A479-01 5 11384979 11384979 G C CTNND2 Silent p.G325G 0.23 TCGA-44-A479-01 5 11411690 11411690 C A CTNND2 Nonsense_Mutation p.E133* 0.10 TCGA-44-A479-01 5 127863648 127863648 C A FBN2 Missense_Mutation p.S150I 0.20 deleterious(0.02) benign(0.02) TCGA-44-A479-01 5 134010795 134010795 G T SEC24A Missense_Mutation p.G347C 0.17 deleterious(0.01) possibly_damaging(0.739) TCGA-44-A479-01 5 137211527 137211527 G T MYOT Missense_Mutation p.Q122H 0.27 tolerated(0.58) benign(0.001) TCGA-44-A479-01 5 140236912 140236912 C G PCDHA10 Missense_Mutation p.R427G 0.12 deleterious_low_confidence(0) possibly_damaging(0.881) TCGA-44-A479-01 5 140554812 140554812 C A PCDHB7 3'UTR 0.04 TCGA-44-A479-01 5 140774638 140774638 A T PCDHGA8 Missense_Mutation p.Y753F 0.13 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-44-A479-01 5 146080608 146080608 C A PPP2R2B Missense_Mutation p.E59D 0.14 tolerated(0.12) benign(0.013) TCGA-44-A479-01 5 156671297 156671297 C A ITK Missense_Mutation p.Q420K 0.15 tolerated(0.26) probably_damaging(0.977) TCGA-44-A479-01 5 157182271 157182271 G T LSM11 Nonstop_Mutation p.*361Lext*22 0.14 TCGA-44-A479-01 5 169931433 169931433 C A KCNIP1 5'Flank 0.21 TCGA-44-A479-01 5 19747251 19747251 C A CDH18 Missense_Mutation p.G108V 0.23 deleterious(0) probably_damaging(1) TCGA-44-A479-01 5 23521220 23521220 A T PRDM9 Missense_Mutation p.Q147L 0.08 tolerated_low_confidence(0.08) benign(0.012) TCGA-44-A479-01 5 23526494 23526494 G T PRDM9 Missense_Mutation p.G433W 0.08 deleterious(0.01) probably_damaging(0.92) TCGA-44-A479-01 5 23527661 23527661 C A PRDM9 Missense_Mutation p.H822N 0.28 deleterious(0) probably_damaging(0.999) TCGA-44-A479-01 5 24537748 24537748 G T CDH10 Silent p.L89L 0.11 TCGA-44-A479-01 5 24593432 24593432 C A CDH10 Missense_Mutation p.W56C 0.14 deleterious(0) probably_damaging(0.98) TCGA-44-A479-01 5 34035752 34035752 C A C1QTNF3 Nonsense_Mutation p.G139* 0.12 TCGA-44-A479-01 5 40854020 40854020 A G CARD6 Silent p.A862A 0.08 TCGA-44-A479-01 5 42719656 42719656 C G GHR 3'UTR 0.21 TCGA-44-A479-01 5 43245938 43245938 C A NIM1K Silent p.R21R 0.21 TCGA-44-A479-01 5 45262353 45262353 C T HCN1 Silent p.R781R 0.10 TCGA-44-A479-01 5 52397241 52397241 C A MOCS2 Missense_Mutation p.D109Y 0.05 deleterious(0.02) benign(0.057) TCGA-44-A479-01 5 76129643 76129643 G T F2RL1 3'UTR 0.12 TCGA-44-A479-01 5 7804733 7804733 G A ADCY2 Silent p.K937K 0.27 TCGA-44-A479-01 5 80109434 80109434 G T MSH3 Missense_Mutation p.G896V 0.07 deleterious(0) probably_damaging(1) TCGA-44-A479-01 6 127767643 127767643 C T KIAA0408 Missense_Mutation p.M607I 0.10 tolerated(0.19) benign(0.002) TCGA-44-A479-01 6 135263663 135263663 C A ALDH8A1 Missense_Mutation p.R109L 0.14 deleterious(0.01) possibly_damaging(0.776) TCGA-44-A479-01 6 151266630 151266630 G T MTHFD1L Missense_Mutation p.V526L 0.05 tolerated(0.52) benign(0.285) TCGA-44-A479-01 6 31747282 31747282 G C VARS Missense_Mutation p.A1107G 0.25 tolerated(0.37) benign(0.012) TCGA-44-A479-01 6 31778728 31778728 C T HSPA1L Missense_Mutation p.G341D 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-A479-01 6 32130872 32130872 A G PPT2 3'UTR 0.17 TCGA-44-A479-01 6 32370842 32370842 G T BTNL2 Silent p.I193I 0.17 TCGA-44-A479-01 6 33139101 33139101 C A COL11A2 Missense_Mutation p.G1001C 0.07 probably_damaging(0.984) TCGA-44-A479-01 6 35289067 35289067 C A DEF6 Silent p.G592G 0.14 TCGA-44-A479-01 6 42974756 42974756 G T PPP2R5D Missense_Mutation p.V144L 0.05 deleterious(0) possibly_damaging(0.447) TCGA-44-A479-01 6 52054069 52054069 G T IL17A Silent p.P149P 0.14 TCGA-44-A479-01 6 54806262 54806262 G A FAM83B Silent p.K831K 0.19 TCGA-44-A479-01 6 55266666 55266666 T A GFRAL 3'UTR 0.15 TCGA-44-A479-01 6 75893333 75893333 C A COL12A1 Missense_Mutation p.V442L 0.08 probably_damaging(0.996) TCGA-44-A479-01 6 78173117 78173117 C T HTR1B Missense_Mutation p.E2K 0.12 tolerated_low_confidence(0.05) possibly_damaging(0.636) TCGA-44-A479-01 6 84366506 84366506 C T SNAP91 Missense_Mutation p.A209T 0.18 deleterious(0) unknown(0) TCGA-44-A479-01 7 107423787 107423787 G C SLC26A3 Missense_Mutation p.P328A 0.13 deleterious(0.01) probably_damaging(1) TCGA-44-A479-01 7 11675981 11675981 G T THSD7A Silent p.P266P 0.29 TCGA-44-A479-01 7 128490928 128490928 G T FLNC Missense_Mutation p.V1824L 0.11 deleterious(0.01) possibly_damaging(0.521) TCGA-44-A479-01 7 130042488 130042488 C A CEP41 Splice_Site p.X192_splice 0.09 TCGA-44-A479-01 7 130042489 130042489 C A CEP41 Missense_Mutation p.A192S 0.09 deleterious(0.03) probably_damaging(0.992) TCGA-44-A479-01 7 141752783 141752783 A T MGAM Missense_Mutation p.K1053M 0.40 deleterious(0.02) possibly_damaging(0.892) TCGA-44-A479-01 7 143417244 143417244 G T FAM115C Missense_Mutation p.W364C 0.21 deleterious(0) probably_damaging(1) TCGA-44-A479-01 7 143701966 143701966 C A OR6B1 Silent p.R293R 0.29 TCGA-44-A479-01 7 144098218 144098218 G T NOBOX Missense_Mutation p.N255K 0.24 deleterious(0.02) benign(0.184) TCGA-44-A479-01 7 14620577 14620577 C A DGKB Splice_Site p.X508_splice 0.33 TCGA-44-A479-01 7 149526084 149526084 G A SSPO Intron 0.36 TCGA-44-A479-01 7 15666539 15666539 G C MEOX2 Silent p.S174S 0.11 TCGA-44-A479-01 7 25218801 25218808 CTGAGGCA - C7orf31 Frame_Shift_Del p.A41Gfs*14 0.15 TCGA-44-A479-01 7 31682749 31682749 G T CCDC129 Missense_Mutation p.V615L 0.18 tolerated(0.08) benign(0.038) TCGA-44-A479-01 7 31746916 31746916 C A PPP1R17 3'UTR 0.12 TCGA-44-A479-01 7 31904609 31904609 C A PDE1C Missense_Mutation p.A293S 0.12 deleterious(0) probably_damaging(1) TCGA-44-A479-01 7 31918623 31918623 C A PDE1C Silent p.G197G 0.16 TCGA-44-A479-01 7 37916496 37916496 C A NME8 Missense_Mutation p.A294D 0.12 tolerated(0.53) benign(0.001) TCGA-44-A479-01 7 44272448 44272448 G A CAMK2B Silent p.V383V 0.13 TCGA-44-A479-01 7 48349569 48349569 C T ABCA13 Missense_Mutation p.A3116V 0.08 probably_damaging(0.957) TCGA-44-A479-01 7 4959885 4959885 G T MMD2 Silent p.A69A 0.30 TCGA-44-A479-01 7 57193762 57193762 C A ZNF479 Missense_Mutation p.Q75H 0.06 deleterious(0.02) benign(0.275) TCGA-44-A479-01 7 84628659 84628659 C A SEMA3D 3'UTR 0.23 TCGA-44-A479-01 7 98513385 98513385 G C TRRAP Missense_Mutation p.A747P 0.11 probably_damaging(0.999) TCGA-44-A479-01 8 105456494 105456494 C T DPYS Missense_Mutation p.A259T 0.25 tolerated(0.19) benign(0.164) TCGA-44-A479-01 8 113697925 113697925 G T CSMD3 Missense_Mutation p.T731K 0.19 deleterious(0.01) probably_damaging(1) TCGA-44-A479-01 8 136554896 136554896 G T KHDRBS3 Splice_Site p.X70_splice 0.23 TCGA-44-A479-01 8 14181647 14181647 G T SGCZ Missense_Mutation p.L101I 0.22 tolerated(0.27) benign(0.306) TCGA-44-A479-01 8 143996561 143996561 T A CYP11B2 Missense_Mutation p.R166W 0.12 deleterious(0) probably_damaging(0.997) TCGA-44-A479-01 8 145095243 145095243 C G SPATC1 Silent p.A215A 0.05 TCGA-44-A479-01 8 23708876 23708876 C T STC1 Missense_Mutation p.A144T 0.15 deleterious(0.04) possibly_damaging(0.566) TCGA-44-A479-01 8 29927535 29927535 C - TMEM66 Frame_Shift_Del p.G108Efs*5 0.09 TCGA-44-A479-01 8 59520391 59520391 C A NSMAF Silent p.V263V 0.25 TCGA-44-A479-01 8 75898442 75898442 A T CRISPLD1 Missense_Mutation p.S74C 0.28 deleterious(0) possibly_damaging(0.778) TCGA-44-A479-01 8 76471226 76471226 T A HNF4G Missense_Mutation p.F349L 0.06 tolerated(0.21) benign(0.004) TCGA-44-A479-01 8 82390993 82390993 A T FABP4 3'UTR 0.32 TCGA-44-A479-01 9 117106038 117106038 T C AKNA Missense_Mutation p.N1236S 0.12 tolerated(1) benign(0) TCGA-44-A479-01 9 121930353 121930353 C A BRINP1 Missense_Mutation p.G432V 0.23 tolerated(0.13) probably_damaging(0.994) TCGA-44-A479-01 9 127933409 127933409 C A PPP6C Missense_Mutation p.Q79H 0.19 tolerated(0.05) benign(0.097) TCGA-44-A479-01 9 13158032 13158032 C A MPDZ Missense_Mutation p.W1146L 0.24 deleterious(0) possibly_damaging(0.514) TCGA-44-A479-01 9 136509364 136509364 G A DBH Missense_Mutation p.G316S 0.22 deleterious(0) probably_damaging(0.996) TCGA-44-A479-01 9 2718878 2718878 G A KCNV2 Missense_Mutation p.R380H 0.30 deleterious(0) probably_damaging(0.998) TCGA-44-A479-01 9 32633875 32633875 C A TAF1L Missense_Mutation p.R568M 0.10 deleterious(0.01) benign(0.192) TCGA-44-A479-01 9 35045619 35045619 G A C9orf131 Missense_Mutation p.S998N 0.22 tolerated(0.13) benign(0.003) TCGA-44-A479-01 9 36169749 36169749 C A CCIN Missense_Mutation p.Q84K 0.28 deleterious(0.01) benign(0.16) TCGA-44-A479-01 9 79321071 79321071 G A PRUNE2 Missense_Mutation p.P2040L 0.15 tolerated(0.12) benign(0.086) TCGA-44-A479-01 X 100880276 100880276 C A ARMCX3 Silent p.R103R 0.16 TCGA-44-A479-01 X 105153139 105153139 G T NRK Missense_Mutation p.Q503H 0.11 deleterious(0.04) benign(0.008) TCGA-44-A479-01 X 107439762 107439762 G A COL4A6 Silent p.I295I 0.23 TCGA-44-A479-01 X 108887108 108887108 A T ACSL4 3'UTR 0.18 TCGA-44-A479-01 X 109764732 109764732 C A TDGF1P3 RNA 0.16 TCGA-44-A479-01 X 112058632 112058632 C A AMOT Missense_Mutation p.R449M 0.15 unknown(0) TCGA-44-A479-01 X 11316773 11316773 C A AMELX Missense_Mutation p.H98N 0.11 tolerated(0.14) unknown(0) TCGA-44-A479-01 X 114249016 114249016 C A IL13RA2 Missense_Mutation p.W123L 0.07 deleterious(0) possibly_damaging(0.735) TCGA-44-A479-01 X 118723886 118723886 T C NKRF Missense_Mutation p.Y516C 0.19 deleterious(0) possibly_damaging(0.717) TCGA-44-A479-01 X 119513513 119513513 C T ATP1B4 3'UTR 0.18 TCGA-44-A479-01 X 123518485 123518485 G T TENM1 Missense_Mutation p.T2099N 0.12 deleterious(0.01) possibly_damaging(0.453) TCGA-44-A479-01 X 123805641 123805641 C T TENM1 Missense_Mutation p.G354R 0.17 tolerated(0.39) probably_damaging(0.993) TCGA-44-A479-01 X 132436998 132436998 G A GPC4 Missense_Mutation p.A523V 0.17 tolerated(0.19) benign(0.003) TCGA-44-A479-01 X 135430882 135430882 G T GPR112 Missense_Mutation p.G1673C 0.13 deleterious(0) benign(0.371) TCGA-44-A479-01 X 140993550 140993550 G - MAGEC1 Frame_Shift_Del p.G121Vfs*21 0.11 TCGA-44-A479-01 X 142718462 142718462 G T SLITRK4 Missense_Mutation p.H155N 0.16 tolerated(0.42) probably_damaging(0.992) TCGA-44-A479-01 X 148564256 148564256 G C IDS 3'UTR 0.16 TCGA-44-A479-01 X 151900432 151900432 C G MAGEA12 Missense_Mutation p.K123N 0.05 deleterious(0) probably_damaging(0.999) TCGA-44-A479-01 X 152994853 152994853 G T ABCD1 Missense_Mutation p.G356V 0.10 deleterious(0.02) benign(0.248) TCGA-44-A479-01 X 153664290 153664290 C A ATP6AP1 3'UTR 0.20 TCGA-44-A479-01 X 153664291 153664291 C A ATP6AP1 3'UTR 0.20 TCGA-44-A479-01 X 154736726 154736726 A G TMLHE Silent p.Y276Y 0.15 TCGA-44-A479-01 X 155235138 155235138 A T IL9R Nonsense_Mutation p.R259* 0.10 TCGA-44-A479-01 X 19009093 19009093 A T GPR64 Silent p.T981T 0.18 TCGA-44-A479-01 X 21675802 21675802 G T KLHL34 Silent p.T35T 0.15 TCGA-44-A479-01 X 46898398 46898398 C T JADE3 Silent p.S301S 0.15 TCGA-44-A479-01 X 47087980 47087980 G T CDK16 Missense_Mutation p.A538S 0.20 tolerated(1) benign(0.025) TCGA-44-A479-01 X 48663851 48663851 G T HDAC6 Silent p.P106P 0.18 TCGA-44-A479-01 X 49645643 49645643 C A USP27X Missense_Mutation p.P245T 0.40 tolerated(0.11) probably_damaging(0.981) TCGA-44-A479-01 X 50054333 50054333 C A CCNB3 Missense_Mutation p.T1055N 0.17 tolerated(0.31) benign(0.403) TCGA-44-A479-01 X 63409826 63409826 G T AMER1 Missense_Mutation p.A1114D 0.27 deleterious(0) benign(0.19) TCGA-44-A479-01 X 64138939 64138939 G T ZC4H2 Missense_Mutation p.Q182K 0.07 deleterious(0.01) probably_damaging(0.989) TCGA-44-A479-01 X 7023769 7023769 C A HDHD1 Missense_Mutation p.A81S 0.28 deleterious(0.04) benign(0.304) TCGA-44-A479-01 X 77126340 77126340 C T MAGT1 Missense_Mutation p.V151M 0.12 deleterious(0) possibly_damaging(0.819) TCGA-44-A479-01 X 78217004 78217004 G T P2RY10 Missense_Mutation p.M329I 0.16 tolerated(0.09) benign(0.147) TCGA-44-A479-01 X 84329284 84329284 G T APOOL Missense_Mutation p.G202V 0.12 tolerated(0.09) possibly_damaging(0.461) TCGA-44-A479-01 X 84502543 84502543 T C ZNF711 Intron 0.16 TCGA-44-A479-01 X 91132547 91132547 A G PCDH11X Silent p.L436L 0.12 TCGA-44-A47A-01 10 102059380 102059380 G A PKD2L1 Nonsense_Mutation p.Q149* 0.11 TCGA-44-A47A-01 10 102721667 102721667 T C FAM178A 3'Flank 0.33 TCGA-44-A47A-01 10 103899419 103899419 C G PPRC1 Missense_Mutation p.S385C 0.04 deleterious_low_confidence(0) possibly_damaging(0.491) TCGA-44-A47A-01 10 126727647 126727647 C T CTBP2 5'UTR 0.12 TCGA-44-A47A-01 10 18803185 18803185 G A CACNB2 Missense_Mutation p.G231S 0.15 tolerated(0.09) unknown(0) TCGA-44-A47A-01 10 23482735 23482735 G T PTF1A Missense_Mutation p.R296L 0.28 tolerated(0.05) unknown(0) TCGA-44-A47A-01 10 70532744 70532744 G C CCAR1 Splice_Site p.X847_splice 0.20 TCGA-44-A47A-01 10 72495002 72495002 C G ADAMTS14 Nonsense_Mutation p.S480* 0.10 TCGA-44-A47A-01 10 98742495 98742495 G A C10orf12 Missense_Mutation p.E450K 0.36 tolerated(0.11) benign(0.046) TCGA-44-A47A-01 10 99126515 99126515 G C RRP12 Missense_Mutation p.Q1067E 0.07 deleterious(0.04) benign(0.004) TCGA-44-A47A-01 11 102826317 102826317 C G MMP13 Missense_Mutation p.E40Q 0.14 tolerated(1) probably_damaging(0.99) TCGA-44-A47A-01 11 108004609 108004609 G A ACAT1 Silent p.L61L 0.19 TCGA-44-A47A-01 11 10819293 10819293 T A EIF4G2 3'UTR 0.41 TCGA-44-A47A-01 11 123396837 123396837 G C GRAMD1B 5'UTR 0.22 TCGA-44-A47A-01 11 123396838 123396838 G T GRAMD1B 5'UTR 0.22 TCGA-44-A47A-01 11 129742798 129742798 C A NFRKB Missense_Mutation p.G940V 0.06 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-A47A-01 11 16068218 16068218 G C SOX6 Missense_Mutation p.L489V 0.36 deleterious(0.04) benign(0.374) TCGA-44-A47A-01 11 2443398 2443398 C T TRPM5 Missense_Mutation p.G91R 0.35 deleterious(0.01) probably_damaging(0.951) TCGA-44-A47A-01 11 30253605 30253605 C A FSHB Silent p.T52T 0.40 TCGA-44-A47A-01 11 33881009 33881009 C A LMO2 Missense_Mutation p.A193S 0.29 tolerated(0.49) benign(0.074) TCGA-44-A47A-01 11 3687518 3687518 C T CHRNA10 Missense_Mutation p.R391H 0.32 tolerated(0.72) benign(0.004) TCGA-44-A47A-01 11 55703625 55703625 C G OR5I1 Silent p.L84L 0.26 TCGA-44-A47A-01 11 56043167 56043167 T A OR5T1 Missense_Mutation p.F18Y 0.39 tolerated(1) benign(0.002) TCGA-44-A47A-01 11 56468668 56468668 A T OR9G1 Missense_Mutation p.M269L 0.24 tolerated(0.1) benign(0) TCGA-44-A47A-01 11 6007775 6007775 T C OR52L1 Missense_Mutation p.E129G 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-44-A47A-01 11 65733926 65733926 C A SART1 Silent p.R363R 0.35 TCGA-44-A47A-01 11 68701297 68701297 G T IGHMBP2 Missense_Mutation p.G485C 0.25 tolerated(0.15) possibly_damaging(0.897) TCGA-44-A47A-01 11 72301025 72301025 G T PDE2A Missense_Mutation p.L253M 0.58 deleterious(0) probably_damaging(0.939) TCGA-44-A47A-01 11 72407648 72407648 C A ARAP1 Missense_Mutation p.R1073L 0.18 tolerated(0.52) benign(0.006) TCGA-44-A47A-01 12 106633722 106633722 G A CKAP4 Nonsense_Mutation p.Q297* 0.26 TCGA-44-A47A-01 12 117383217 117383217 A G FBXW8 Missense_Mutation p.R158G 0.34 deleterious(0) probably_damaging(0.944) TCGA-44-A47A-01 12 124116902 124116902 C G EIF2B1 Missense_Mutation p.K35N 0.27 tolerated(0.11) benign(0.053) TCGA-44-A47A-01 12 130648189 130648189 G A FZD10 Nonsense_Mutation p.W234* 0.23 TCGA-44-A47A-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.19 deleterious(0) benign(0.361) TCGA-44-A47A-01 12 48533651 48533651 G T PFKM Nonsense_Mutation p.E454* 0.32 TCGA-44-A47A-01 12 51865081 51865081 C G SLC4A8 Missense_Mutation p.L557V 0.04 deleterious(0.03) probably_damaging(0.923) TCGA-44-A47A-01 12 64057579 64057579 G - DPY19L2 Frame_Shift_Del p.L137Sfs*8 0.13 TCGA-44-A47A-01 12 66773167 66773167 C T GRIP1 Silent p.R786R 0.04 TCGA-44-A47A-01 12 70209149 70209149 C G RAB3IP Missense_Mutation p.Q452E 0.25 tolerated(0.52) benign(0.081) TCGA-44-A47A-01 12 7654016 7654016 T C CD163 Missense_Mutation p.K59R 0.34 tolerated(0.85) benign(0.002) TCGA-44-A47A-01 12 95365362 95365362 G A NDUFA12 Missense_Mutation p.P98S 0.23 deleterious(0) probably_damaging(0.993) TCGA-44-A47A-01 13 20012281 20012281 G A TPTE2 Missense_Mutation p.T329I 0.18 deleterious(0.03) possibly_damaging(0.851) TCGA-44-A47A-01 13 20412884 20412884 G C ZMYM5 Missense_Mutation p.F276L 0.05 deleterious(0.01) benign(0.294) TCGA-44-A47A-01 13 24895531 24895531 G T AL359736.1 Silent p.T12T 0.37 TCGA-44-A47A-01 13 52603877 52603877 A T UTP14C Nonsense_Mutation p.K313* 0.25 TCGA-44-A47A-01 14 20851649 20851649 G - TEP1 Frame_Shift_Del p.R1289Gfs*7 0.12 TCGA-44-A47A-01 14 23058008 23058008 G C DAD1 Missense_Mutation p.S19C 0.07 deleterious(0.02) possibly_damaging(0.669) TCGA-44-A47A-01 14 24702349 24702349 C T GMPR2 5'UTR 0.09 TCGA-44-A47A-01 14 80993233 80993233 A G CEP128 Missense_Mutation p.Y1018H 0.42 tolerated(0.41) benign(0.006) TCGA-44-A47A-01 14 93651718 93651718 C T TMEM251 5'UTR 0.06 TCGA-44-A47A-01 15 24923805 24923805 C T NPAP1 Missense_Mutation p.P931S 0.22 tolerated(0.18) probably_damaging(0.934) TCGA-44-A47A-01 15 25470430 25470430 C T SNORD115-30 RNA 0.24 TCGA-44-A47A-01 15 72640064 72640064 T C HEXA Missense_Mutation p.Y370C 0.28 deleterious(0.02) probably_damaging(0.991) TCGA-44-A47A-01 15 72958032 72958032 C T GOLGA6B Silent p.D563D 0.28 TCGA-44-A47A-01 16 29816493 29816493 A C KIF22 Missense_Mutation p.K650Q 0.29 deleterious(0.04) probably_damaging(0.96) TCGA-44-A47A-01 16 47536926 47536926 G T PHKB Missense_Mutation p.R110S 0.12 deleterious(0) probably_damaging(0.999) TCGA-44-A47A-01 16 72993740 72993740 G A ZFHX3 Missense_Mutation p.A102V 0.29 benign(0.117) TCGA-44-A47A-01 16 87435794 87435794 G A MAP1LC3B Missense_Mutation p.R37Q 0.07 deleterious(0) possibly_damaging(0.506) TCGA-44-A47A-01 17 10317547 10317547 G T MYH8 Missense_Mutation p.P324T 0.29 tolerated(0.34) benign(0.054) TCGA-44-A47A-01 17 11535919 11535919 G A DNAH9 Missense_Mutation p.V512I 0.31 benign(0.005) TCGA-44-A47A-01 17 15973546 15973546 C A NCOR1 Silent p.R1482R 0.04 TCGA-44-A47A-01 17 16612759 16612759 C A CCDC144A Missense_Mutation p.T463K 0.27 tolerated(0.15) possibly_damaging(0.788) TCGA-44-A47A-01 17 20799269 20799269 G A CCDC144NL Missense_Mutation p.A22V 0.19 deleterious_low_confidence(0.01) probably_damaging(0.971) TCGA-44-A47A-01 17 39658972 39658972 G T KRT13 Silent p.G330G 0.33 TCGA-44-A47A-01 17 40705595 40705595 C G HSD17B1 Missense_Mutation p.S135W 0.12 tolerated(0.05) benign(0.234) TCGA-44-A47A-01 17 43474306 43474306 C G ARHGAP27 Missense_Mutation p.E302Q 0.12 deleterious(0.03) possibly_damaging(0.475) TCGA-44-A47A-01 17 47076513 47076513 C T IGF2BP1 Missense_Mutation p.S73L 0.11 deleterious(0.01) benign(0.127) TCGA-44-A47A-01 17 4873763 4873763 G A CAMTA2 Silent p.F982F 0.07 TCGA-44-A47A-01 17 58422958 58422958 C G USP32 Missense_Mutation p.E24Q 0.10 deleterious(0) probably_damaging(0.932) TCGA-44-A47A-01 17 59067511 59067511 T G BCAS3 Missense_Mutation p.I467M 0.08 tolerated(0.22) benign(0.093) TCGA-44-A47A-01 17 66551756 66551756 C T FAM20A Missense_Mutation p.S178N 0.18 tolerated(0.78) benign(0.005) TCGA-44-A47A-01 17 71197368 71197368 G C COG1 Missense_Mutation p.E468Q 0.03 deleterious(0) probably_damaging(0.979) TCGA-44-A47A-01 17 7453503 7453503 C G TNFSF12 Missense_Mutation p.R92G 0.31 deleterious_low_confidence(0.01) benign(0.353) TCGA-44-A47A-01 17 7664159 7664159 C T DNAH2 Missense_Mutation p.R963W 0.33 probably_damaging(0.941) TCGA-44-A47A-01 17 77984263 77984263 C T TBC1D16 Missense_Mutation p.E159K 0.25 tolerated(0.24) benign(0.044) TCGA-44-A47A-01 18 13884626 13884626 A T MC2R Nonstop_Mutation p.*298Kext*3 0.30 TCGA-44-A47A-01 18 14479189 14479189 C A CXADRP3 RNA 0.10 TCGA-44-A47A-01 18 32917577 32917577 C G ZNF24 Missense_Mutation p.K242N 0.20 deleterious(0.01) benign(0.403) TCGA-44-A47A-01 18 42532724 42532724 C G SETBP1 Missense_Mutation p.A1140G 0.19 tolerated(0.94) benign(0.004) TCGA-44-A47A-01 18 67266634 67266634 C T DOK6 Silent p.H63H 0.08 TCGA-44-A47A-01 19 11559930 11559930 C T PRKCSH Silent p.F460F 0.17 TCGA-44-A47A-01 19 12127056 12127056 A G ZNF433 Missense_Mutation p.F209S 0.20 tolerated(0.54) benign(0.003) TCGA-44-A47A-01 19 12127155 12127155 C T ZNF433 Missense_Mutation p.G176E 0.09 deleterious(0.03) possibly_damaging(0.82) TCGA-44-A47A-01 19 13264541 13264541 C T IER2 Missense_Mutation p.R181C 0.39 deleterious(0.01) probably_damaging(0.95) TCGA-44-A47A-01 19 14104375 14104375 G A RFX1 Missense_Mutation p.S94L 0.09 deleterious_low_confidence(0.01) benign(0.026) TCGA-44-A47A-01 19 17943490 17943490 G A JAK3 Missense_Mutation p.R840C 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-44-A47A-01 19 21541871 21541871 G A ZNF738 5'UTR 0.09 TCGA-44-A47A-01 19 22154147 22154147 C A ZNF208 Missense_Mutation p.C1230F 0.23 deleterious(0) probably_damaging(0.979) TCGA-44-A47A-01 19 30935940 30935940 T A ZNF536 Missense_Mutation p.C491S 0.11 deleterious(0.05) benign(0.021) TCGA-44-A47A-01 19 39909404 39909404 C A PLEKHG2 Silent p.R372R 0.06 TCGA-44-A47A-01 19 40520370 40520370 C G ZNF546 Nonsense_Mutation p.S398* 0.08 TCGA-44-A47A-01 19 40993635 40993635 C T SPTBN4 Silent p.F67F 0.11 TCGA-44-A47A-01 19 42270109 42270109 C T CEACAM6 Missense_Mutation p.S326L 0.04 tolerated(0.06) possibly_damaging(0.701) TCGA-44-A47A-01 19 42566686 42566686 C G GRIK5 Missense_Mutation p.K154N 0.10 tolerated(0.45) benign(0.024) TCGA-44-A47A-01 19 43519268 43519268 C A PSG11 Missense_Mutation p.A322S 0.19 tolerated(0.68) benign(0.005) TCGA-44-A47A-01 19 43579644 43579644 G C PSG2 Missense_Mutation p.H191D 0.07 tolerated(0.79) benign(0.163) TCGA-44-A47A-01 19 44156512 44156512 C G PLAUR Missense_Mutation p.E207Q 0.05 tolerated(1) benign(0.108) TCGA-44-A47A-01 19 45850715 45850715 C T KLC3 Missense_Mutation p.S167F 0.27 deleterious(0.02) possibly_damaging(0.903) TCGA-44-A47A-01 19 45850717 45850717 C G KLC3 Missense_Mutation p.P168A 0.27 tolerated(0.14) benign(0.019) TCGA-44-A47A-01 19 49206803 49206803 G C FUT2 Missense_Mutation p.G197A 0.09 tolerated(0.08) probably_damaging(1) TCGA-44-A47A-01 19 51274669 51274669 C T GPR32 Missense_Mutation p.P271L 0.07 deleterious(0.03) probably_damaging(0.992) TCGA-44-A47A-01 19 52714679 52714679 C T PPP2R1A Missense_Mutation p.S146L 0.04 deleterious(0) probably_damaging(0.997) TCGA-44-A47A-01 19 55085786 55085786 C T LILRA2 Missense_Mutation p.T30I 0.27 tolerated(0.16) possibly_damaging(0.669) TCGA-44-A47A-01 19 55493922 55493922 G A NLRP2 Missense_Mutation p.V286M 0.12 deleterious(0) probably_damaging(0.988) TCGA-44-A47A-01 19 57839917 57839917 G A ZNF543 Missense_Mutation p.G363R 0.23 deleterious(0.01) possibly_damaging(0.789) TCGA-44-A47A-01 19 58101522 58101522 C T ZIK1 Silent p.L115L 0.06 TCGA-44-A47A-01 1 11318596 11318596 C G MTOR Missense_Mutation p.E73Q 0.05 tolerated(0.25) possibly_damaging(0.867) TCGA-44-A47A-01 1 11596419 11596419 C T PTCHD2 Silent p.A1285A 0.25 TCGA-44-A47A-01 1 12939868 12939868 C G PRAMEF4 Missense_Mutation p.D312H 0.07 deleterious(0.01) possibly_damaging(0.85) TCGA-44-A47A-01 1 150549791 150549791 A C MCL1 3'UTR 0.08 TCGA-44-A47A-01 1 151535162 151535162 G A TUFT1 Silent p.K79K 0.29 TCGA-44-A47A-01 1 153312857 153312857 T A PGLYRP4 Missense_Mutation p.N275I 0.44 deleterious(0) probably_damaging(0.998) TCGA-44-A47A-01 1 153747912 153747912 G A SLC27A3 Missense_Mutation p.G27E 0.08 tolerated_low_confidence(0.67) unknown(0) TCGA-44-A47A-01 1 156046880 156046880 C A MEX3A Missense_Mutation p.G350C 0.39 tolerated(0.17) possibly_damaging(0.57) TCGA-44-A47A-01 1 16475273 16475273 C G EPHA2 Missense_Mutation p.K141N 0.11 deleterious(0) probably_damaging(1) TCGA-44-A47A-01 1 171236778 171236778 G C FMO1 Missense_Mutation p.D77H 0.04 tolerated(0.36) possibly_damaging(0.511) TCGA-44-A47A-01 1 179504080 179504080 C G AXDND1 Nonsense_Mutation p.S1005* 0.07 TCGA-44-A47A-01 1 183097864 183097864 C T LAMC1 Missense_Mutation p.R1087C 0.09 deleterious(0.04) benign(0.394) TCGA-44-A47A-01 1 190067188 190067188 G - BRINP3 Frame_Shift_Del p.P754Qfs*55 0.23 TCGA-44-A47A-01 1 196303148 196303148 G T KCNT2 Missense_Mutation p.A609E 0.30 tolerated(0.74) benign(0.022) TCGA-44-A47A-01 1 204966443 204966443 C T NFASC Silent p.T976T 0.16 TCGA-44-A47A-01 1 20915665 20915665 G T CDA Missense_Mutation p.V15F 0.26 deleterious(0.02) benign(0.098) TCGA-44-A47A-01 1 209907741 209907741 C T HSD11B1 Missense_Mutation p.R252C 0.10 deleterious(0) probably_damaging(1) TCGA-44-A47A-01 1 214794039 214794039 C T CENPF Silent p.R205R 0.05 TCGA-44-A47A-01 1 228509156 228509156 A G OBSCN Missense_Mutation p.M5829V 0.20 benign(0.034) TCGA-44-A47A-01 1 235897896 235897896 C T LYST Missense_Mutation p.E2808K 0.26 tolerated(0.84) benign(0.002) TCGA-44-A47A-01 1 235933492 235933492 G A LYST Missense_Mutation p.H1964Y 0.04 tolerated(0.11) probably_damaging(0.979) TCGA-44-A47A-01 1 238048066 238048066 C G ZP4 Intron 0.31 TCGA-44-A47A-01 1 248551654 248551654 A T OR2T6 Missense_Mutation p.T249S 0.41 tolerated(1) benign(0.052) TCGA-44-A47A-01 1 39341612 39341612 G C GJA9 Missense_Mutation p.I53M 0.34 deleterious(0) possibly_damaging(0.763) TCGA-44-A47A-01 1 50666509 50666509 G T ELAVL4 Intron 0.13 TCGA-44-A47A-01 1 51873958 51873958 G A EPS15 Missense_Mutation p.S441F 0.04 deleterious(0.03) probably_damaging(0.937) TCGA-44-A47A-01 1 65855124 65855124 C T DNAJC6 Missense_Mutation p.A460V 0.24 deleterious(0.04) benign(0.056) TCGA-44-A47A-01 20 2641185 2641185 G A IDH3B Nonsense_Mutation p.Q195* 0.32 TCGA-44-A47A-01 20 49211104 49211104 C - FAM65C Frame_Shift_Del p.G729Dfs*5 0.15 TCGA-44-A47A-01 20 52645178 52645178 G T BCAS1 Missense_Mutation p.A159D 0.31 deleterious(0.01) possibly_damaging(0.881) TCGA-44-A47A-01 20 56078641 56078641 T A CTCFL Missense_Mutation p.H564L 0.20 deleterious(0.02) probably_damaging(0.983) TCGA-44-A47A-01 20 58349336 58349336 G A PHACTR3 Missense_Mutation p.R322Q 0.27 deleterious(0.02) possibly_damaging(0.836) TCGA-44-A47A-01 20 58444979 58444979 C A SYCP2 Silent p.L1205L 0.15 TCGA-44-A47A-01 20 9546778 9546780 CTG AT PAK7 Frame_Shift_Del p.W416Gfs*62 0.30 TCGA-44-A47A-01 20 9561523 9561523 C G PAK7 Missense_Mutation p.E87Q 0.05 tolerated(0.13) probably_damaging(0.986) TCGA-44-A47A-01 21 38128977 38128977 C A HLCS Missense_Mutation p.K625N 0.35 tolerated(0.43) benign(0.001) TCGA-44-A47A-01 21 42613791 42613791 G T BACE2 Missense_Mutation p.A222S 0.32 tolerated(0.28) benign(0.193) TCGA-44-A47A-01 21 43716393 43716393 T C ABCG1 Missense_Mutation p.V643A 0.39 deleterious(0.03) benign(0.027) TCGA-44-A47A-01 22 23742593 23742593 G C ZDHHC8P1 RNA 0.38 TCGA-44-A47A-01 22 31851961 31851961 C A EIF4ENIF1 Missense_Mutation p.V326F 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-44-A47A-01 2 108487940 108487940 C G RGPD4 Missense_Mutation p.F1160L 0.04 deleterious(0) probably_damaging(0.964) TCGA-44-A47A-01 2 135966448 135966448 G C ZRANB3 Missense_Mutation p.P866A 0.23 tolerated(0.18) benign(0.027) TCGA-44-A47A-01 2 141260627 141260627 C G LRP1B Missense_Mutation p.R2856P 0.22 possibly_damaging(0.767) TCGA-44-A47A-01 2 141598492 141598492 G T LRP1B Silent p.V1703V 0.22 TCGA-44-A47A-01 2 141660510 141660510 C A LRP1B Missense_Mutation p.G1249C 0.23 probably_damaging(0.981) TCGA-44-A47A-01 2 141819750 141819750 G T LRP1B Missense_Mutation p.T369K 0.29 benign(0.168) TCGA-44-A47A-01 2 152394467 152394467 C G NEB Missense_Mutation p.M7007I 0.08 benign(0.03) TCGA-44-A47A-01 2 15493755 15493755 G C NBAS Silent p.L1337L 0.26 TCGA-44-A47A-01 2 160084420 160084420 A G TANC1 Missense_Mutation p.N1332D 0.12 deleterious(0.04) possibly_damaging(0.665) TCGA-44-A47A-01 2 202571685 202571685 C A ALS2 Silent p.P1488P 0.23 TCGA-44-A47A-01 2 210558621 210558621 C G MAP2 Missense_Mutation p.S576C 0.06 deleterious(0) probably_damaging(1) TCGA-44-A47A-01 2 210893664 210893664 C A KANSL1L Missense_Mutation p.E767D 0.08 deleterious(0.01) possibly_damaging(0.755) TCGA-44-A47A-01 2 220112151 220112151 C T STK16 Missense_Mutation p.T152I 0.21 deleterious(0.02) probably_damaging(0.917) TCGA-44-A47A-01 2 241658550 241658550 C A KIF1A Missense_Mutation p.R1696L 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-44-A47A-01 2 28815538 28815538 G C PLB1 Silent p.L733L 0.19 TCGA-44-A47A-01 2 56419617 56419617 C T CCDC85A Silent p.I94I 0.06 TCGA-44-A47A-01 2 61009128 61009128 G A PAPOLG Missense_Mutation p.E339K 0.06 deleterious(0) probably_damaging(0.999) TCGA-44-A47A-01 2 71012648 71012648 C G FIGLA Missense_Mutation p.E170Q 0.04 deleterious(0.03) possibly_damaging(0.642) TCGA-44-A47A-01 2 88423958 88423958 C T FABP1 Intron 0.21 TCGA-44-A47A-01 2 99995584 99995584 G C EIF5B Missense_Mutation p.D649H 0.14 probably_damaging(1) TCGA-44-A47A-01 3 101309083 101309083 G A PCNP Missense_Mutation p.E127K 0.14 deleterious(0) probably_damaging(0.935) TCGA-44-A47A-01 3 112357249 112357249 G C CCDC80 Missense_Mutation p.L502V 0.10 deleterious(0.04) probably_damaging(0.978) TCGA-44-A47A-01 3 12200289 12200289 G T TIMP4 Missense_Mutation p.L18M 0.10 tolerated(0.15) probably_damaging(0.996) TCGA-44-A47A-01 3 12200290 12200290 C T TIMP4 Silent p.L17L 0.11 TCGA-44-A47A-01 3 124632471 124632471 C T MUC13 Missense_Mutation p.G340D 0.07 tolerated(0.07) possibly_damaging(0.717) TCGA-44-A47A-01 3 130305502 130305502 C A COL6A6 Missense_Mutation p.L1375M 0.24 tolerated(0.06) probably_damaging(0.999) TCGA-44-A47A-01 3 134270781 134270781 A T CEP63 Missense_Mutation p.Q465L 0.11 deleterious(0) benign(0.316) TCGA-44-A47A-01 3 134960130 134960130 C T EPHB1 Silent p.S829S 0.15 TCGA-44-A47A-01 3 155199746 155199746 C T PLCH1 Missense_Mutation p.E1365K 0.21 deleterious_low_confidence(0) benign(0.097) TCGA-44-A47A-01 3 157081461 157081461 C G VEPH1 Missense_Mutation p.S476T 0.05 tolerated(0.19) benign(0.001) TCGA-44-A47A-01 3 167250697 167250697 C G WDR49 Missense_Mutation p.D323H 0.17 tolerated(0.26) benign(0.016) TCGA-44-A47A-01 3 169644898 169644898 C T SAMD7 Missense_Mutation p.S283L 0.37 tolerated(0.06) benign(0.021) TCGA-44-A47A-01 3 3083998 3083998 C T CNTN4 Silent p.P801P 0.26 TCGA-44-A47A-01 3 33431755 33431755 G A UBP1 3'UTR 0.12 TCGA-44-A47A-01 3 361500 361500 T A CHL1 Missense_Mutation p.L14Q 0.28 deleterious(0.01) probably_damaging(0.936) TCGA-44-A47A-01 3 37100392 37100392 G A LRRFIP2 Silent p.L587L 0.34 TCGA-44-A47A-01 3 41266101 41266101 C T CTNNB1 Missense_Mutation p.S33F 0.12 deleterious(0) probably_damaging(0.949) TCGA-44-A47A-01 3 57107825 57107825 A T SPATA12 Nonsense_Mutation p.R35* 0.35 TCGA-44-A47A-01 3 58625859 58625859 G C FAM3D Missense_Mutation p.S123C 0.30 deleterious(0) probably_damaging(0.99) TCGA-44-A47A-01 3 62257082 62257082 C T PTPRG Missense_Mutation p.R1012C 0.09 deleterious(0) probably_damaging(0.977) TCGA-44-A47A-01 3 74548863 74548863 A T CNTN3 Missense_Mutation p.D43E 0.26 tolerated(1) benign(0.015) TCGA-44-A47A-01 3 97887621 97887621 C A OR5H15 Silent p.P26P 0.14 TCGA-44-A47A-01 4 106158268 106158268 G T TET2 Nonsense_Mutation p.E1057* 0.27 TCGA-44-A47A-01 4 114277786 114277786 C T ANK2 Missense_Mutation p.A2671V 0.16 benign(0.06) TCGA-44-A47A-01 4 123663259 123663259 A GT BBS12 Frame_Shift_Ins p.N71Sfs*2 0.15 TCGA-44-A47A-01 4 128564897 128564897 T - INTU Frame_Shift_Del p.L124Yfs*19 0.18 TCGA-44-A47A-01 4 170610358 170610358 G A CLCN3 Missense_Mutation p.E195K 0.06 tolerated(0.06) benign(0.107) TCGA-44-A47A-01 4 22444333 22444333 T A GPR125 Missense_Mutation p.D287V 0.19 deleterious(0) probably_damaging(0.969) TCGA-44-A47A-01 4 3176672 3176672 G C HTT Splice_Site p.X1416_splice 0.13 TCGA-44-A47A-01 4 36075403 36075403 G A ARAP2 Missense_Mutation p.R1551C 0.17 deleterious(0.02) possibly_damaging(0.762) TCGA-44-A47A-01 4 41258998 41258998 A T UCHL1 Missense_Mutation p.Q2L 0.27 tolerated(0.16) benign(0.166) TCGA-44-A47A-01 5 1034967 1034967 G A NKD2 Missense_Mutation p.V175I 0.23 deleterious(0) probably_damaging(0.988) TCGA-44-A47A-01 5 140176480 140176480 G T PCDHA2 Missense_Mutation p.R644L 0.37 deleterious_low_confidence(0.03) benign(0.16) TCGA-44-A47A-01 5 140264044 140264044 G A PCDHA13 Missense_Mutation p.A731T 0.18 tolerated_low_confidence(0.18) benign(0.002) TCGA-44-A47A-01 5 140683193 140683193 G C SLC25A2 Silent p.V80V 0.11 TCGA-44-A47A-01 5 140794141 140794141 G C PCDHGA10 Missense_Mutation p.E467Q 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-A47A-01 5 149589043 149589043 G T SLC6A7 Silent p.V592V 0.33 TCGA-44-A47A-01 5 154275708 154275708 G T GEMIN5 Missense_Mutation p.Q1181K 0.05 tolerated(0.08) benign(0.005) TCGA-44-A47A-01 5 169144456 169144456 C A DOCK2 Silent p.I700I 0.24 TCGA-44-A47A-01 5 31483736 31483736 C A DROSHA Splice_Site p.X666_splice 0.36 TCGA-44-A47A-01 5 35659161 35659161 G C SPEF2 Missense_Mutation p.R340P 0.37 deleterious(0) probably_damaging(0.998) TCGA-44-A47A-01 5 35670235 35670235 C G SPEF2 Missense_Mutation p.S477C 0.19 tolerated(0.07) possibly_damaging(0.781) TCGA-44-A47A-01 5 74754917 74754918 - TGC COL4A3BP In_Frame_Ins p.Q235dup 0.21 TCGA-44-A47A-01 5 78347201 78347201 T A DMGDH Silent p.P218P 0.26 TCGA-44-A47A-01 5 79034902 79034902 A T CMYA5 Silent p.S3438S 0.19 TCGA-44-A47A-01 5 82837619 82837619 C A VCAN Missense_Mutation p.Q2933K 0.22 tolerated(1) benign(0.005) TCGA-44-A47A-01 6 105280922 105280922 T A HACE1 Nonsense_Mutation p.K177* 0.10 TCGA-44-A47A-01 6 151161988 151161988 C G PLEKHG1 Missense_Mutation p.L1372V 0.04 deleterious(0) probably_damaging(0.997) TCGA-44-A47A-01 6 170103009 170103009 G A C6orf120 Missense_Mutation p.D152N 0.71 deleterious(0.02) benign(0.216) TCGA-44-A47A-01 6 170104189 170104189 G C PHF10 Intron 0.26 TCGA-44-A47A-01 6 20109946 20109946 G A MBOAT1 Missense_Mutation p.S415L 0.16 deleterious(0) probably_damaging(0.967) TCGA-44-A47A-01 6 24412543 24412543 C T MRS2 Nonsense_Mutation p.Q170* 0.32 TCGA-44-A47A-01 6 26031935 26031935 C T HIST1H3B Silent p.V118V 0.06 TCGA-44-A47A-01 6 33157109 33157109 G C COL11A2 Missense_Mutation p.Q74E 0.17 possibly_damaging(0.817) TCGA-44-A47A-01 6 35466109 35466109 C T TULP1 Missense_Mutation p.E542K 0.30 deleterious(0) probably_damaging(0.996) TCGA-44-A47A-01 6 35773573 35773573 C T LHFPL5 Silent p.A42A 0.12 TCGA-44-A47A-01 6 43171614 43171614 G A CUL9 Missense_Mutation p.E1350K 0.08 deleterious(0) probably_damaging(0.999) TCGA-44-A47A-01 6 53385715 53385715 C A GCLC Nonsense_Mutation p.E103* 0.04 TCGA-44-A47A-01 6 82924119 82924119 C T IBTK Missense_Mutation p.D677N 0.24 tolerated(0.55) benign(0.003) TCGA-44-A47A-01 6 84117593 84117593 G A ME1 Nonsense_Mutation p.Q36* 0.28 TCGA-44-A47A-01 6 90077773 90077773 A T RRAGD 3'UTR 0.33 TCGA-44-A47A-01 7 117431681 117431681 T A CTTNBP2 Silent p.P523P 0.19 TCGA-44-A47A-01 7 129962536 129962536 T A CPA4 3'UTR 0.27 TCGA-44-A47A-01 7 131866221 131866221 G T PLXNA4 Silent p.T1137T 0.28 TCGA-44-A47A-01 7 143175883 143175883 G T TAS2R41 Silent p.V306V 0.14 TCGA-44-A47A-01 7 143792317 143792317 G T OR2A12 Missense_Mutation p.M39I 0.05 deleterious(0.03) benign(0.001) TCGA-44-A47A-01 7 144245656 144245656 C G TPK1 Missense_Mutation p.D181H 0.20 deleterious(0.01) benign(0.099) TCGA-44-A47A-01 7 150269611 150269611 C T GIMAP4 Silent p.L151L 0.06 TCGA-44-A47A-01 7 27168806 27168806 C A HOXA4 3'UTR 0.18 TCGA-44-A47A-01 7 27224742 27224742 G T HOXA11 Missense_Mutation p.P8T 0.23 deleterious(0.03) probably_damaging(0.959) TCGA-44-A47A-01 7 37355555 37355555 G T ELMO1 Missense_Mutation p.L30M 0.15 deleterious(0) probably_damaging(0.976) TCGA-44-A47A-01 7 92146862 92146862 C G PEX1 Missense_Mutation p.D323H 0.26 deleterious(0.02) possibly_damaging(0.572) TCGA-44-A47A-01 7 97937197 97937197 C G BAIAP2L1 Missense_Mutation p.D323H 0.06 deleterious(0.01) possibly_damaging(0.872) TCGA-44-A47A-01 8 10465754 10465754 C A RP1L1 Missense_Mutation p.G1952W 0.32 unknown(0) TCGA-44-A47A-01 8 120795660 120795660 G T TAF2 Missense_Mutation p.F691L 0.28 deleterious(0) possibly_damaging(0.824) TCGA-44-A47A-01 8 140630764 140630764 C T KCNK9 Missense_Mutation p.A288T 0.17 tolerated(0.18) benign(0.002) TCGA-44-A47A-01 8 144917856 144917856 G C NRBP2 Silent p.L494L 0.12 TCGA-44-A47A-01 8 26212050 26212050 G T PPP2R2A Nonsense_Mutation p.E93* 0.31 TCGA-44-A47A-01 8 77896274 77896274 C A PEX2 Silent p.G47G 0.39 TCGA-44-A47A-01 9 101832054 101832054 A G COL15A1 Silent p.G1351G 0.33 TCGA-44-A47A-01 9 104125206 104125206 G A BAAT Missense_Mutation p.T254M 0.09 deleterious(0) probably_damaging(0.983) TCGA-44-A47A-01 9 113275358 113275358 G A SVEP1 Missense_Mutation p.P384L 0.37 probably_damaging(1) TCGA-44-A47A-01 9 113275359 113275359 G T SVEP1 Missense_Mutation p.P384T 0.37 probably_damaging(1) TCGA-44-A47A-01 9 116093269 116093269 C G WDR31 Missense_Mutation p.D82H 0.12 deleterious(0) probably_damaging(0.947) TCGA-44-A47A-01 9 126143716 126143716 C T DENND1A Missense_Mutation p.E1009K 0.08 deleterious_low_confidence(0) possibly_damaging(0.884) TCGA-44-A47A-01 9 130478436 130478436 G C TTC16 Silent p.S4S 0.07 TCGA-44-A47A-01 9 132400455 132400455 C G ASB6 Missense_Mutation p.A294P 0.15 tolerated(0.53) benign(0.002) TCGA-44-A47A-01 9 135975545 135975545 C G RALGDS Intron 0.15 TCGA-44-A47A-01 9 139404312 139404312 C T NOTCH1 Missense_Mutation p.E948K 0.06 deleterious(0) probably_damaging(0.999) TCGA-44-A47A-01 9 15466854 15466854 G C PSIP1 Nonsense_Mutation p.S475* 0.10 TCGA-44-A47A-01 9 21440736 21440736 T C IFNA1 Missense_Mutation p.I77T 0.27 tolerated(0.06) benign(0.164) TCGA-44-A47A-01 9 34372996 34372996 C T KIAA1161 5'UTR 0.09 TCGA-44-A47A-01 9 34689737 34689737 C G CCL19 3'UTR 0.12 TCGA-44-A47A-01 9 35108009 35108009 C T FAM214B Missense_Mutation p.R88K 0.12 tolerated(0.08) benign(0.243) TCGA-44-A47A-01 9 95609090 95609090 C G ZNF484 Missense_Mutation p.G662A 0.31 deleterious(0.04) probably_damaging(0.998) TCGA-44-A47A-01 9 99160598 99160598 T G ZNF367 Splice_Site p.X141_splice 0.33 TCGA-44-A47A-01 X 120182196 120182196 G A GLUD2 Missense_Mutation p.D220N 0.05 deleterious(0.03) probably_damaging(0.999) TCGA-44-A47A-01 X 12904028 12904028 T C TLR7 Missense_Mutation p.L134P 0.45 deleterious(0) probably_damaging(0.999) TCGA-44-A47A-01 X 129058938 129058938 G A UTP14A Missense_Mutation p.E506K 0.05 tolerated(0.22) benign(0.12) TCGA-44-A47A-01 X 131188767 131188767 G T MST4 Missense_Mutation p.A51S 0.05 deleterious(0.02) probably_damaging(1) TCGA-44-A47A-01 X 136113264 136113264 G T GPR101 Silent p.P190P 0.43 TCGA-44-A47A-01 X 13762578 13762578 G T OFD1 Missense_Mutation p.A153S 0.17 tolerated(0.79) benign(0.061) TCGA-44-A47A-01 X 138724731 138724731 G A MCF2 Intron 0.33 TCGA-44-A47A-01 X 153416198 153416198 C T OPN1LW Silent p.I61I 0.05 TCGA-44-A47A-01 X 154157622 154157622 C T F8 Silent p.L1481L 0.07 TCGA-44-A47A-01 X 24757591 24757591 C G POLA1 Missense_Mutation p.L708V 0.07 deleterious(0) probably_damaging(0.998) TCGA-44-A47A-01 X 39921444 39921444 T C BCOR Missense_Mutation p.N1459S 0.42 deleterious(0) possibly_damaging(0.644) TCGA-44-A47A-01 X 47044700 47044700 G A RBM10 Splice_Site p.X701_splice 0.55 TCGA-44-A47A-01 X 54581096 54581096 G A GNL3L Missense_Mutation p.A473T 0.19 tolerated(0.21) benign(0.005) TCGA-44-A47A-01 X 70356267 70356267 A T MED12 Missense_Mutation p.Q1721L 0.38 benign(0.032) TCGA-44-A47A-01 X 71493198 71493198 T C RPS4X Missense_Mutation p.I192V 0.30 tolerated(1) benign(0.012) TCGA-44-A47A-01 X 9900370 9900370 C T SHROOM2 Missense_Mutation p.P1016L 0.28 deleterious(0) probably_damaging(0.972) TCGA-44-A47A-01 X 99891703 99891703 G C TSPAN6 5'UTR 0.40 TCGA-44-A47B-01 11 55432689 55432689 C A OR4C6 Missense_Mutation p.T16K 0.08 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-44-A47B-01 11 66191812 66191812 C A NPAS4 Missense_Mutation p.P484Q 0.19 deleterious_low_confidence(0.02) benign(0.152) TCGA-44-A47B-01 12 109052654 109052654 C A CORO1C Nonsense_Mutation p.E164* 0.11 TCGA-44-A47B-01 12 110466236 110466236 A G ANKRD13A Intron 0.28 TCGA-44-A47B-01 12 129431953 129431953 G A GLT1D1 Missense_Mutation p.A164T 0.40 deleterious(0.01) possibly_damaging(0.695) TCGA-44-A47B-01 12 69968587 69968587 T G FRS2 Missense_Mutation p.L460R 0.31 tolerated(0.39) probably_damaging(0.998) TCGA-44-A47B-01 12 72008719 72008719 C T ZFC3H1 Splice_Site p.X1752_splice 0.32 TCGA-44-A47B-01 13 49073856 49073856 C T RCBTB2 Missense_Mutation p.D429N 0.45 tolerated(0.21) benign(0.004) TCGA-44-A47B-01 14 20403985 20403985 C A OR4K1 Missense_Mutation p.H54N 0.16 tolerated(0.11) benign(0.001) TCGA-44-A47B-01 14 24632699 24632699 C T IRF9 Silent p.L159L 0.30 TCGA-44-A47B-01 14 39565214 39565214 G A SEC23A Missense_Mutation p.P37S 0.41 deleterious(0) probably_damaging(0.989) TCGA-44-A47B-01 14 73444901 73444901 T C ZFYVE1 Silent p.K487K 0.13 TCGA-44-A47B-01 14 73721320 73721320 C T PAPLN Missense_Mutation p.R441W 0.17 deleterious(0) possibly_damaging(0.888) TCGA-44-A47B-01 15 77425756 77425756 C T PEAK1 Missense_Mutation p.R1223H 0.16 tolerated(0.15) benign(0) TCGA-44-A47B-01 16 28913342 28913342 C T ATP2A1 Silent p.I753I 0.25 TCGA-44-A47B-01 17 18043893 18043893 C T MYO15A Silent p.S1758S 0.50 TCGA-44-A47B-01 17 59469431 59469431 C T BCAS3 Missense_Mutation p.P911L 0.20 deleterious_low_confidence(0.01) benign(0.096) TCGA-44-A47B-01 17 61895495 61895495 C G DDX42 Missense_Mutation p.R852G 0.06 tolerated_low_confidence(0.1) benign(0.19) TCGA-44-A47B-01 18 55020011 55020011 G A ST8SIA3 5'UTR 0.36 TCGA-44-A47B-01 18 59221613 59221613 G A CDH20 Silent p.T697T 0.09 TCGA-44-A47B-01 19 12902749 12902749 C A JUNB Missense_Mutation p.A55D 0.26 tolerated(0.36) benign(0.078) TCGA-44-A47B-01 19 39034067 39034067 C T RYR1 Missense_Mutation p.R3924W 0.40 benign(0.04) TCGA-44-A47B-01 19 49459546 49459546 C G BAX Missense_Mutation p.R109G 0.33 deleterious(0.02) probably_damaging(1) TCGA-44-A47B-01 19 51919218 51919218 G A SIGLEC10 Missense_Mutation p.R320C 0.13 tolerated(0.1) benign(0.219) TCGA-44-A47B-01 19 57640389 57640389 G T USP29 Missense_Mutation p.D116Y 0.09 deleterious(0) benign(0.038) TCGA-44-A47B-01 19 9204691 9204691 C T OR1M1 Silent p.G257G 0.17 TCGA-44-A47B-01 1 151345147 151345147 G A SELENBP1 5'UTR 0.38 TCGA-44-A47B-01 1 209788688 209788688 T A LAMB3 Silent p.G1149G 0.29 TCGA-44-A47B-01 1 27876516 27876517 - C AHDC1 Frame_Shift_Ins p.V704Gfs*16 0.11 TCGA-44-A47B-01 20 30897813 30897813 G A KIF3B Missense_Mutation p.R78Q 0.17 tolerated(0.11) benign(0.09) TCGA-44-A47B-01 20 45717984 45717984 C A EYA2 Missense_Mutation p.S256R 0.06 tolerated(0.13) benign(0.415) TCGA-44-A47B-01 21 45547949 45547949 C T PWP2 Silent p.F759F 0.29 TCGA-44-A47B-01 22 32630895 32630895 G A SLC5A4 Missense_Mutation p.P284S 0.18 tolerated(0.61) benign(0.014) TCGA-44-A47B-01 2 209358033 209358033 C T PTH2R Silent p.S434S 0.16 TCGA-44-A47B-01 2 225727416 225727416 C A DOCK10 Missense_Mutation p.L550F 0.14 deleterious(0) probably_damaging(0.934) TCGA-44-A47B-01 3 185431149 185431149 C A C3orf65 5'UTR 0.17 TCGA-44-A47B-01 3 52394425 52394425 C T DNAH1 Missense_Mutation p.T1557M 0.24 probably_damaging(1) TCGA-44-A47B-01 5 100152183 100152183 G A ST8SIA4 Intron 0.22 TCGA-44-A47B-01 5 121188481 121188481 A G FTMT 3'UTR 0.13 TCGA-44-A47B-01 5 127477566 127477578 ATCGTAACAGAGC TT SLC12A2 Frame_Shift_Del p.I556Ffs*14 0.28 TCGA-44-A47B-01 5 140563328 140563328 G T PCDHB16 Missense_Mutation p.K398N 0.20 deleterious_low_confidence(0.01) benign(0.021) TCGA-44-A47B-01 5 150856269 150856269 T A SLC36A1 Missense_Mutation p.F314Y 0.20 tolerated(0.19) possibly_damaging(0.558) TCGA-44-A47B-01 5 167675295 167675295 G T TENM2 Nonsense_Mutation p.E2451* 0.16 TCGA-44-A47B-01 5 26881671 26881671 T A CDH9 Silent p.S648S 0.42 TCGA-44-A47B-01 5 33662112 33662112 T C ADAMTS12 Missense_Mutation p.T317A 0.31 deleterious(0) probably_damaging(1) TCGA-44-A47B-01 5 9629554 9629554 C A TAS2R1 Missense_Mutation p.L197F 0.32 deleterious(0) probably_damaging(0.999) TCGA-44-A47B-01 5 96503202 96503202 A G RIOK2 Missense_Mutation p.S456P 0.23 deleterious(0.02) benign(0.019) TCGA-44-A47B-01 6 136687522 136687522 C T MAP7 Missense_Mutation p.R333Q 0.26 deleterious(0.05) benign(0.126) TCGA-44-A47B-01 6 160225119 160225119 A T PNLDC1 Missense_Mutation p.K113M 0.37 deleterious(0) probably_damaging(0.999) TCGA-44-A47B-01 6 26271152 26271152 G T HIST1H3G 3'UTR 0.17 TCGA-44-A47B-01 6 30121724 30121724 G A TRIM10 3'UTR 0.32 TCGA-44-A47B-01 6 42713313 42713313 C A TBCC Missense_Mutation p.D167Y 0.31 deleterious(0.04) benign(0.133) TCGA-44-A47B-01 6 56480333 56480333 G A DST Intron 0.36 TCGA-44-A47B-01 6 7581228 7581228 G A DSP Missense_Mutation p.R1602K 0.20 probably_damaging(0.965) TCGA-44-A47B-01 7 72742687 72742687 C A FKBP6 Nonsense_Mutation p.S56* 0.13 TCGA-44-A47B-01 7 79082367 79082368 - T MAGI2 Frame_Shift_Ins p.D91Gfs*15 0.15 TCGA-44-A47B-01 8 61533286 61533286 A T RAB2A Silent p.A199A 0.30 TCGA-44-A47B-01 8 77895426 77895426 T C PEX2 3'UTR 0.19 TCGA-44-A47B-01 8 99129395 99129395 G A HRSP12 5'UTR 0.21 TCGA-44-A47B-01 9 113170322 113170322 C T SVEP1 Missense_Mutation p.V2520I 0.17 benign(0.023) TCGA-44-A47B-01 9 2123820 2123820 C T SMARCA2 Silent p.D1288D 0.39 TCGA-44-A47B-01 X 3229173 3229173 C G MXRA5 Missense_Mutation p.Q2357H 0.34 tolerated(0.31) benign(0.011) TCGA-44-A47B-01 Y 15026555 15026555 T C DDX3Y Silent p.A251A 0.68 TCGA-44-A47F-01 10 121658370 121658370 C T SEC23IP Missense_Mutation p.P199S 0.12 tolerated(0.1) possibly_damaging(0.725) TCGA-44-A47F-01 10 13378281 13378281 G A SEPHS1 Silent p.L123L 0.14 TCGA-44-A47F-01 11 101375096 101375096 G T TRPC6 Missense_Mutation p.Q202K 0.21 tolerated(0.88) probably_damaging(0.966) TCGA-44-A47F-01 11 118452185 118452185 T A ARCN1 Silent p.I76I 0.20 TCGA-44-A47F-01 11 119549228 119549228 G C PVRL1 Missense_Mutation p.I109M 0.15 deleterious(0) probably_damaging(0.999) TCGA-44-A47F-01 11 129785595 129785595 G A PRDM10 Missense_Mutation p.P833L 0.16 deleterious(0) probably_damaging(0.999) TCGA-44-A47F-01 11 131781444 131781444 C T NTM Silent p.F23F 0.20 TCGA-44-A47F-01 11 64419085 64419085 G A NRXN2 Missense_Mutation p.R854W 0.19 deleterious(0) probably_damaging(0.997) TCGA-44-A47F-01 11 76257080 76257080 A G C11orf30 Silent p.P1171P 0.16 TCGA-44-A47F-01 12 106461476 106461476 G A NUAK1 Missense_Mutation p.R364W 0.22 deleterious(0) possibly_damaging(0.847) TCGA-44-A47F-01 12 11546450 11546450 C G PRB2 Missense_Mutation p.G188R 0.10 deleterious(0.02) unknown(0) TCGA-44-A47F-01 12 118675894 118675894 G A TAOK3 Missense_Mutation p.H141Y 0.14 tolerated(0.76) benign(0.116) TCGA-44-A47F-01 12 2224661 2224661 G A CACNA1C Silent p.L107L 0.08 TCGA-44-A47F-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.40 deleterious(0.04) probably_damaging(0.993) TCGA-44-A47F-01 12 47471836 47471836 G A AMIGO2 Missense_Mutation p.A317V 0.19 tolerated(0.38) benign(0.014) TCGA-44-A47F-01 12 47471837 47471837 C A AMIGO2 Missense_Mutation p.A317S 0.20 tolerated(0.64) benign(0.009) TCGA-44-A47F-01 12 52797631 52797631 C T KRT82 Silent p.Q158Q 0.10 TCGA-44-A47F-01 12 56234451 56234451 C T MMP19 Missense_Mutation p.G174R 0.17 deleterious(0) probably_damaging(1) TCGA-44-A47F-01 12 56478833 56478833 C G ERBB3 Missense_Mutation p.L97V 0.07 deleterious(0) probably_damaging(0.974) TCGA-44-A47F-01 14 106208479 106208479 C T IGHG1 Missense_Mutation p.E141K 0.22 tolerated(1) benign(0.014) TCGA-44-A47F-01 14 20443741 20443741 C T OR4K15 Missense_Mutation p.P22S 0.07 tolerated(0.21) benign(0.005) TCGA-44-A47F-01 15 27128618 27128618 C T GABRA5 Silent p.N137N 0.15 TCGA-44-A47F-01 15 30033549 30033549 T C TJP1 Silent p.E414E 0.29 TCGA-44-A47F-01 15 39910349 39910349 C T FSIP1 Missense_Mutation p.R429K 0.20 tolerated(0.74) benign(0.002) TCGA-44-A47F-01 16 21968561 21968561 T A UQCRC2 Missense_Mutation p.F13L 0.21 tolerated(0.52) benign(0.012) TCGA-44-A47F-01 16 3299630 3299630 C T MEFV Missense_Mutation p.R354Q 0.20 tolerated(1) benign(0.004) TCGA-44-A47F-01 16 70867841 70867841 G A HYDIN Missense_Mutation p.T4543M 0.31 probably_damaging(0.968) TCGA-44-A47F-01 17 1639474 1639474 G A WDR81 Missense_Mutation p.G1823S 0.18 tolerated(0.39) probably_damaging(0.997) TCGA-44-A47F-01 17 18023017 18023017 G A MYO15A Silent p.P301P 0.33 TCGA-44-A47F-01 17 34871791 34871791 C A MYO19 Missense_Mutation p.A153S 0.33 deleterious(0.04) possibly_damaging(0.771) TCGA-44-A47F-01 17 39973309 39973309 G A FKBP10 Splice_Site p.X82_splice 0.13 TCGA-44-A47F-01 17 44049267 44049267 C T MAPT Missense_Mutation p.P59L 0.14 deleterious(0.03) benign(0.003) TCGA-44-A47F-01 17 45821624 45821624 G A TBX21 Missense_Mutation p.G278R 0.10 deleterious(0.02) possibly_damaging(0.647) TCGA-44-A47F-01 17 53111585 53111585 G T STXBP4 Missense_Mutation p.G274C 0.14 deleterious(0) possibly_damaging(0.77) TCGA-44-A47F-01 17 57684530 57684530 C G DHX40 Silent p.G779G 0.18 TCGA-44-A47F-01 17 67014665 67014665 C T ABCA9 Missense_Mutation p.E886K 0.13 tolerated(1) benign(0.001) TCGA-44-A47F-01 18 22805046 22805046 G A ZNF521 Missense_Mutation p.R946W 0.21 deleterious(0) benign(0.445) TCGA-44-A47F-01 18 48434439 48434439 G T ME2 Missense_Mutation p.A39S 0.42 deleterious(0.04) probably_damaging(0.999) TCGA-44-A47F-01 19 10610187 10610187 G - KEAP1 Frame_Shift_Del p.L175Wfs*55 0.29 TCGA-44-A47F-01 19 1207064 1207065 - G STK11 Frame_Shift_Ins p.D53Gfs*110 0.35 TCGA-44-A47F-01 19 36430545 36430545 C T LRFN3 Missense_Mutation p.S73F 0.11 deleterious(0.02) benign(0.212) TCGA-44-A47F-01 19 39660257 39660257 C T PAK4 Missense_Mutation p.H22Y 0.15 deleterious(0) probably_damaging(0.995) TCGA-44-A47F-01 19 51499390 51499390 G A KLK8 Silent p.S281S 0.13 TCGA-44-A47F-01 19 52003188 52003188 G C SIGLEC12 Missense_Mutation p.S265C 0.20 deleterious(0.03) probably_damaging(1) TCGA-44-A47F-01 19 54600429 54600429 A T OSCAR Silent p.P35P 0.06 TCGA-44-A47F-01 19 55377343 55377343 C T KIR3DL2 Missense_Mutation p.R362C 0.11 tolerated(0.06) benign(0.009) TCGA-44-A47F-01 19 57867715 57867715 G T ZNF304 Missense_Mutation p.V160F 0.12 tolerated(0.77) benign(0.01) TCGA-44-A47F-01 19 9065057 9065057 T C MUC16 Silent p.E7463E 0.15 TCGA-44-A47F-01 19 9226409 9226409 C A OR7G1 Nonsense_Mutation p.E11* 0.12 TCGA-44-A47F-01 1 151740627 151740627 G T OAZ3 Missense_Mutation p.A88S 0.32 tolerated(0.46) benign(0.22) TCGA-44-A47F-01 1 154524428 154524428 C A UBE2Q1 Missense_Mutation p.V332F 0.06 deleterious(0) probably_damaging(0.998) TCGA-44-A47F-01 1 179077597 179077597 G C ABL2 Missense_Mutation p.I935M 0.07 tolerated_low_confidence(0.08) probably_damaging(0.998) TCGA-44-A47F-01 1 181732649 181732649 C A CACNA1E Silent p.T1599T 0.10 TCGA-44-A47F-01 1 186280656 186280656 G T PRG4 Nonsense_Mutation p.G1241* 0.07 TCGA-44-A47F-01 1 193051831 193051831 A T TROVE2 Missense_Mutation p.Y486F 0.13 deleterious(0) probably_damaging(0.993) TCGA-44-A47F-01 1 203186240 203186240 C T CHIT1 Missense_Mutation p.G393D 0.29 tolerated(0.47) benign(0.004) TCGA-44-A47F-01 1 248616494 248616494 G T OR2T2 Silent p.R132R 0.19 TCGA-44-A47F-01 1 26644516 26644516 G A CD52 Missense_Mutation p.R3H 0.57 tolerated_low_confidence(0.11) possibly_damaging(0.715) TCGA-44-A47F-01 1 43803785 43803785 C T MPL Missense_Mutation p.A32V 0.09 tolerated(0.05) possibly_damaging(0.886) TCGA-44-A47F-01 1 74507264 74507264 C T LRRIQ3 Missense_Mutation p.E451K 0.15 tolerated(0.39) benign(0.025) TCGA-44-A47F-01 20 32677568 32677568 T C EIF2S2 Missense_Mutation p.K324E 0.15 deleterious(0.02) probably_damaging(0.985) TCGA-44-A47F-01 20 33147220 33147220 G C MAP1LC3A Missense_Mutation p.D60H 0.15 tolerated(0.06) probably_damaging(0.989) TCGA-44-A47F-01 20 33147221 33147221 A C MAP1LC3A Missense_Mutation p.D60A 0.14 deleterious(0.01) probably_damaging(0.94) TCGA-44-A47F-01 20 57829499 57829499 T G ZNF831 Missense_Mutation p.S1579A 0.10 tolerated(0.39) benign(0.391) TCGA-44-A47F-01 20 60448884 60448884 G A CDH4 Silent p.P326P 0.09 TCGA-44-A47F-01 22 40816868 40816868 G A MKL1 Silent p.I288I 0.08 TCGA-44-A47F-01 2 103090140 103090140 T A SLC9A4 5'UTR 0.11 TCGA-44-A47F-01 2 111395555 111395555 G A BUB1 Missense_Mutation p.R1082C 0.11 deleterious(0) probably_damaging(0.999) TCGA-44-A47F-01 2 118766202 118766202 G C CCDC93 Silent p.V25V 0.17 TCGA-44-A47F-01 2 1241726 1241726 C T SNTG2 Silent p.A262A 0.27 TCGA-44-A47F-01 2 125261978 125261978 C T CNTNAP5 Missense_Mutation p.S390L 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-44-A47F-01 2 130912763 130912763 G A SMPD4 Silent p.L492L 0.14 TCGA-44-A47F-01 2 157186159 157186159 T C NR4A2 Silent p.Q180Q 0.14 TCGA-44-A47F-01 2 166012288 166012288 T C SCN3A Missense_Mutation p.E386G 0.24 deleterious(0) probably_damaging(0.979) TCGA-44-A47F-01 2 179418691 179418691 T C TTN Missense_Mutation p.Q29716R 0.10 TCGA-44-A47F-01 2 201683065 201683065 G T BZW1 Missense_Mutation p.E288D 0.43 tolerated(0.22) benign(0.342) TCGA-44-A47F-01 2 220147946 220147946 C T DNAJB2 Silent p.I179I 0.16 TCGA-44-A47F-01 2 220379438 220379438 C A ASIC4 Silent p.R125R 0.35 TCGA-44-A47F-01 2 232389908 232389908 C T NMUR1 Missense_Mutation p.C376Y 0.16 tolerated(1) benign(0.001) TCGA-44-A47F-01 2 240981574 240981574 G T PRR21 Missense_Mutation p.P276T 0.29 tolerated_low_confidence(0.75) unknown(0) TCGA-44-A47F-01 2 242098664 242098664 G C PPP1R7 Missense_Mutation p.E114Q 0.05 deleterious(0.01) possibly_damaging(0.802) TCGA-44-A47F-01 2 30863483 30863490 TAAGATTA - LCLAT1 Missense_Mutation 0.20 TCGA-44-A47F-01 2 3691859 3691859 T C COLEC11 3'UTR 0.33 TCGA-44-A47F-01 2 37873867 37873867 T C CDC42EP3 5'UTR 0.43 TCGA-44-A47F-01 3 169485453 169485453 G A ACTRT3 Missense_Mutation p.L296F 0.47 deleterious(0.01) probably_damaging(0.998) TCGA-44-A47F-01 3 182598751 182598751 G A ATP11B Missense_Mutation p.E831K 0.14 deleterious(0) probably_damaging(1) TCGA-44-A47F-01 3 20225247 20225247 T C SGOL1 Silent p.L64L 0.31 TCGA-44-A47F-01 3 50382591 50382591 G A ZMYND10 Silent p.G55G 0.15 TCGA-44-A47F-01 3 52420280 52420280 G T DNAH1 Missense_Mutation p.Q2910H 0.20 probably_damaging(0.992) TCGA-44-A47F-01 4 186545479 186545479 G A SORBS2 Silent p.N464N 0.18 TCGA-44-A47F-01 5 140235732 140235732 A C PCDHA10 Silent p.S33S 0.18 TCGA-44-A47F-01 5 140783915 140783915 G A PCDHGA9 Missense_Mutation p.A466T 0.07 deleterious_low_confidence(0.01) benign(0.088) TCGA-44-A47F-01 5 141041814 141041814 G T ARAP3 Missense_Mutation p.L937M 0.09 tolerated(0.21) probably_damaging(0.979) TCGA-44-A47F-01 5 155553 155553 G T PLEKHG4B Missense_Mutation p.A379S 0.08 tolerated(0.24) benign(0.138) TCGA-44-A47F-01 5 169108878 169108878 G A DOCK2 Missense_Mutation p.E201K 0.10 deleterious(0.04) possibly_damaging(0.566) TCGA-44-A47F-01 5 178555068 178555068 G T ADAMTS2 Missense_Mutation p.H837N 0.07 deleterious(0.05) benign(0.008) TCGA-44-A47F-01 5 180477370 180477370 G T BTNL9 Splice_Site p.X246_splice 0.12 TCGA-44-A47F-01 5 60050500 60050500 C T ELOVL7 Missense_Mutation p.R266K 0.08 tolerated(0.23) probably_damaging(0.997) TCGA-44-A47F-01 6 26638438 26638438 G A ZNF322 Missense_Mutation p.S115L 0.12 tolerated(0.25) benign(0.322) TCGA-44-A47F-01 6 30865940 30865940 G A DDR1 Silent p.T775T 0.06 TCGA-44-A47F-01 6 42985314 42985314 C G KLHDC3 Missense_Mutation p.P71R 0.09 tolerated(0.58) benign(0) TCGA-44-A47F-01 6 47775961 47775961 T A OPN5 Silent p.A276A 0.53 TCGA-44-A47F-01 6 7410649 7410649 G T RIOK1 Nonsense_Mutation p.E412* 0.44 TCGA-44-A47F-01 7 11022782 11022782 A T PHF14 Missense_Mutation p.N299I 0.13 tolerated(0.07) possibly_damaging(0.521) TCGA-44-A47F-01 7 119915554 119915554 G T KCND2 Missense_Mutation p.V290F 0.13 deleterious(0) probably_damaging(1) TCGA-44-A47F-01 7 82580112 82580112 C T PCLO Silent p.K3264K 0.15 TCGA-44-A47F-01 8 3256971 3256971 G T CSMD1 Missense_Mutation p.H783N 0.41 benign(0) TCGA-44-A47F-01 9 125315711 125315711 C A OR1N2 Missense_Mutation p.A88D 0.15 deleterious(0) possibly_damaging(0.692) TCGA-44-A47F-01 9 139091648 139091648 C T LHX3 Silent p.V115V 0.13 TCGA-44-A47F-01 9 21206502 21206502 G C IFNA10 3'UTR 0.12 TCGA-44-A47F-01 9 95142055 95142055 A C CENPP Silent p.R160R 0.16 TCGA-44-A47F-01 9 99580413 99580413 G A ZNF782 Missense_Mutation p.S631L 0.05 deleterious(0) probably_damaging(0.998) TCGA-44-A47F-01 X 102979089 102979089 C G GLRA4 Missense_Mutation p.E137D 0.32 deleterious(0) probably_damaging(0.999) TCGA-44-A47F-01 X 104728316 104728316 G A IL1RAPL2 Missense_Mutation p.D237N 0.22 tolerated(0.42) benign(0.015) TCGA-44-A47F-01 X 134983834 134983834 G T SAGE1 Missense_Mutation p.W68C 0.51 deleterious(0.01) possibly_damaging(0.473) TCGA-44-A47F-01 X 89177154 89177154 C A TGIF2LX Missense_Mutation p.Q24K 0.46 tolerated(0.53) benign(0.067) TCGA-44-A47G-01 10 98708926 98708926 C G LCOR Missense_Mutation p.P38A 0.06 tolerated(0.55) benign(0.014) TCGA-44-A47G-01 11 113848603 113848603 A T HTR3A Missense_Mutation p.T66S 0.06 deleterious(0.02) benign(0.177) TCGA-44-A47G-01 11 117387317 117387317 G T DSCAML1 Missense_Mutation p.R610S 0.13 deleterious(0.03) probably_damaging(1) TCGA-44-A47G-01 11 14063097 14063097 G A SPON1 RNA 0.04 TCGA-44-A47G-01 11 34156118 34156118 C A NAT10 Missense_Mutation p.H632Q 0.09 deleterious(0) probably_damaging(0.952) TCGA-44-A47G-01 11 4409627 4409627 T A TRIM21 Missense_Mutation p.E213V 0.10 deleterious(0.03) possibly_damaging(0.448) TCGA-44-A47G-01 11 66453366 66453366 G T SPTBN2 Missense_Mutation p.F2383L 0.08 deleterious(0.05) unknown(0) TCGA-44-A47G-01 11 71939464 71939464 C G INPPL1 Missense_Mutation p.Q107E 0.05 tolerated(0.07) benign(0.248) TCGA-44-A47G-01 12 52646092 52646092 A C KRT7 3'Flank 0.06 TCGA-44-A47G-01 13 101763579 101763579 T C NALCN Splice_Site p.X731_splice 0.10 TCGA-44-A47G-01 13 33684076 33684076 G A STARD13 Missense_Mutation p.T994I 0.08 deleterious(0) probably_damaging(1) TCGA-44-A47G-01 13 33703149 33703150 - A STARD13 Frame_Shift_Ins p.T556Nfs*4 0.08 TCGA-44-A47G-01 13 52673893 52673893 G A NEK5 Nonsense_Mutation p.Q338* 0.30 TCGA-44-A47G-01 13 88328152 88328152 C A SLITRK5 Missense_Mutation p.P170H 0.11 deleterious(0) probably_damaging(0.971) TCGA-44-A47G-01 14 88478006 88478006 A G GPR65 Missense_Mutation p.Y272C 0.11 deleterious(0) probably_damaging(1) TCGA-44-A47G-01 14 92627506 92627506 C T CPSF2 Silent p.F724F 0.06 TCGA-44-A47G-01 14 92627534 92627534 C G CPSF2 Missense_Mutation p.Q734E 0.05 tolerated(0.29) benign(0.099) TCGA-44-A47G-01 15 25468218 25468218 G C SNORD115-27 3'Flank 0.12 TCGA-44-A47G-01 15 29346527 29346527 C A APBA2 Missense_Mutation p.P147Q 0.07 tolerated_low_confidence(0.56) benign(0.006) TCGA-44-A47G-01 15 82533609 82533609 A T EFTUD1 Splice_Site p.X126_splice 0.07 TCGA-44-A47G-01 16 3349433 3349433 G A TIGD7 Silent p.T394T 0.09 TCGA-44-A47G-01 17 10450905 10450905 G A MYH2 Missense_Mutation p.P79S 0.10 tolerated(0.26) benign(0.001) TCGA-44-A47G-01 17 18023035 18023035 C T MYO15A Silent p.Y307Y 0.16 TCGA-44-A47G-01 17 34185257 34185257 C A C17orf66 Nonsense_Mutation p.E367* 0.06 TCGA-44-A47G-01 17 65156439 65156439 G C HELZ Silent p.L705L 0.16 TCGA-44-A47G-01 17 7578271 7578271 T A TP53 Missense_Mutation p.H193L 0.12 deleterious(0) probably_damaging(1) TCGA-44-A47G-01 18 12326017 12326017 A C TUBB6 Missense_Mutation p.E410A 0.04 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-44-A47G-01 18 13884723 13884723 G T MC2R Silent p.I265I 0.08 TCGA-44-A47G-01 18 24035843 24035843 C G KCTD1 Missense_Mutation p.R213T 0.05 tolerated(0.53) benign(0.017) TCGA-44-A47G-01 18 29041259 29041259 G T DSG3 Nonsense_Mutation p.E295* 0.30 TCGA-44-A47G-01 19 1037755 1037755 C T CNN2 Silent p.F262F 0.07 TCGA-44-A47G-01 19 12155653 12155653 C G ZNF878 Missense_Mutation p.R188T 0.04 tolerated(0.72) benign(0.006) TCGA-44-A47G-01 19 38855744 38855744 G T CATSPERG Missense_Mutation p.G867V 0.10 deleterious(0) probably_damaging(0.979) TCGA-44-A47G-01 19 4554407 4554407 A C SEMA6B Missense_Mutation p.L255R 0.15 deleterious(0) possibly_damaging(0.834) TCGA-44-A47G-01 1 100933521 100933521 G T CDC14A Missense_Mutation p.G283V 0.06 deleterious(0) probably_damaging(1) TCGA-44-A47G-01 1 11579486 11579486 G T PTCHD2 Missense_Mutation p.G655V 0.06 deleterious(0.02) possibly_damaging(0.835) TCGA-44-A47G-01 1 120458413 120458413 G C NOTCH2 Missense_Mutation p.P2311R 0.05 deleterious(0.02) probably_damaging(0.999) TCGA-44-A47G-01 1 152282974 152282974 C G FLG Missense_Mutation p.G1463A 0.03 possibly_damaging(0.794) TCGA-44-A47G-01 1 155147917 155147917 A T TRIM46 Missense_Mutation p.Y40F 0.08 tolerated(1) possibly_damaging(0.785) TCGA-44-A47G-01 1 155264485 155264485 G A PKLR Silent p.G251G 0.12 TCGA-44-A47G-01 1 15905400 15905400 C T AGMAT Missense_Mutation p.R225Q 0.11 deleterious(0) probably_damaging(1) TCGA-44-A47G-01 1 159828685 159828685 G A VSIG8 Missense_Mutation p.R23W 0.07 deleterious(0) probably_damaging(1) TCGA-44-A47G-01 1 213178425 213178425 T A ANGEL2 Missense_Mutation p.S362C 0.11 deleterious(0.04) probably_damaging(0.967) TCGA-44-A47G-01 1 236645797 236645797 G A EDARADD Missense_Mutation p.E166K 0.08 deleterious(0) possibly_damaging(0.814) TCGA-44-A47G-01 1 248039760 248039760 C T TRIM58 Missense_Mutation p.P477L 0.07 tolerated_low_confidence(0.18) benign(0.001) TCGA-44-A47G-01 1 248756147 248756147 T C OR2T10 Missense_Mutation p.Q308R 0.07 tolerated(0.65) benign(0.001) TCGA-44-A47G-01 1 40773385 40773385 G A COL9A2 Missense_Mutation p.P315L 0.16 deleterious(0) possibly_damaging(0.908) TCGA-44-A47G-01 1 44461719 44461719 C T CCDC24 Nonsense_Mutation p.R271* 0.10 TCGA-44-A47G-01 1 89656982 89656982 G C GBP4 Missense_Mutation p.T293S 0.07 tolerated(0.08) benign(0.096) TCGA-44-A47G-01 20 1961527 1961528 - A PDYN Frame_Shift_Ins p.T70Hfs*9 0.17 TCGA-44-A47G-01 20 2463960 2463960 G T ZNF343 Nonsense_Mutation p.Y549* 0.10 TCGA-44-A47G-01 20 30804817 30804817 G A POFUT1 Intron 0.07 TCGA-44-A47G-01 2 103120088 103120088 T C SLC9A4 Missense_Mutation p.I301T 0.13 deleterious(0) probably_damaging(0.999) TCGA-44-A47G-01 2 105886139 105886139 G C TGFBRAP1 Missense_Mutation p.P666A 0.14 tolerated(0.46) benign(0.065) TCGA-44-A47G-01 2 175664886 175664886 C A CHN1 Silent p.L446L 0.12 TCGA-44-A47G-01 2 189943259 189943259 C A COL5A2 Missense_Mutation p.G348W 0.08 probably_damaging(0.999) TCGA-44-A47G-01 2 197189701 197189701 T A HECW2 Intron 0.09 TCGA-44-A47G-01 2 209138435 209138435 C T PIKFYVE Silent p.L100L 0.07 TCGA-44-A47G-01 2 234345041 234345041 G T DGKD Missense_Mutation p.S258I 0.05 deleterious(0) probably_damaging(0.999) TCGA-44-A47G-01 2 27876348 27876348 C T SUPT7L 3'UTR 0.10 TCGA-44-A47G-01 2 43968145 43968145 C A PLEKHH2 Missense_Mutation p.L1062I 0.07 deleterious(0.02) probably_damaging(0.933) TCGA-44-A47G-01 2 48050414 48050414 C G FBXO11 Missense_Mutation p.C495S 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-44-A47G-01 2 72362467 72362467 C A CYP26B1 Missense_Mutation p.A171S 0.04 tolerated(1) benign(0.004) TCGA-44-A47G-01 3 138121022 138121022 C T MRAS Missense_Mutation p.P180S 0.11 tolerated(0.07) benign(0.023) TCGA-44-A47G-01 3 186506920 186506920 C T EIF4A2 Silent p.G362G 0.12 TCGA-44-A47G-01 3 39228104 39228104 G T XIRP1 Silent p.R945R 0.10 TCGA-44-A47G-01 3 49038897 49038897 G C P4HTM Missense_Mutation p.E155Q 0.11 deleterious(0) probably_damaging(0.996) TCGA-44-A47G-01 3 49062390 49062390 G T IMPDH2 Missense_Mutation p.R412S 0.08 deleterious(0) probably_damaging(0.99) TCGA-44-A47G-01 3 65342649 65342649 C T MAGI1 Missense_Mutation p.D1265N 0.06 tolerated(0.06) benign(0.366) TCGA-44-A47G-01 4 125631732 125631732 G A ANKRD50 5'UTR 0.08 TCGA-44-A47G-01 4 16504268 16504268 A C LDB2 Nonstop_Mutation p.*374Eext*31 0.08 TCGA-44-A47G-01 4 76924829 76924829 C T CXCL9 Silent p.K100K 0.07 TCGA-44-A47G-01 5 140475245 140475245 C T PCDHB2 Missense_Mutation p.R291C 0.14 tolerated_low_confidence(0.11) benign(0.168) TCGA-44-A47G-01 5 140589746 140589746 G A PCDHB12 Missense_Mutation p.V423I 0.05 deleterious_low_confidence(0.03) benign(0.226) TCGA-44-A47G-01 5 176562870 176562870 G A NSD1 Missense_Mutation p.A256T 0.08 tolerated_low_confidence(0.05) benign(0.001) TCGA-44-A47G-01 6 126080810 126080810 C T HEY2 Silent p.N292N 0.05 TCGA-44-A47G-01 6 30297202 30297202 G A TRIM39 Silent p.L36L 0.06 TCGA-44-A47G-01 6 30550840 30550840 C G ABCF1 Intron 0.09 TCGA-44-A47G-01 6 44371653 44371653 T G CDC5L Missense_Mutation p.F216C 0.14 deleterious(0) probably_damaging(0.997) TCGA-44-A47G-01 7 100685396 100685396 C A MUC17 Missense_Mutation p.R3567S 0.15 benign(0.001) TCGA-44-A47G-01 7 116412045 116412045 T G MET Splice_Site p.X1028_splice 0.27 TCGA-44-A47G-01 7 134645358 134645358 G A CALD1 Silent p.K758K 0.21 TCGA-44-A47G-01 7 143748307 143748307 G A OR2A5 Silent p.Q271Q 0.09 TCGA-44-A47G-01 7 143792587 143792587 G C OR2A12 Missense_Mutation p.L129F 0.19 deleterious(0.01) possibly_damaging(0.621) TCGA-44-A47G-01 7 151860499 151860499 T C KMT2C Missense_Mutation p.N3388S 0.06 probably_damaging(0.997) TCGA-44-A47G-01 7 27147855 27147855 C A HOXA3 Silent p.G337G 0.24 TCGA-44-A47G-01 8 128750809 128750809 A G MYC Missense_Mutation p.M116V 0.08 tolerated(0.67) benign(0.437) TCGA-44-A47G-01 8 143958498 143958498 T G CYP11B1 Missense_Mutation p.N179T 0.08 deleterious(0.04) possibly_damaging(0.85) TCGA-44-A47G-01 8 146108179 146108179 G A ZNF250 Missense_Mutation p.P135L 0.07 tolerated(0.37) benign(0) TCGA-44-A47G-01 8 146108192 146108192 T C ZNF250 Missense_Mutation p.T131A 0.06 tolerated(0.74) benign(0) TCGA-44-A47G-01 9 109688518 109688518 A T ZNF462 Missense_Mutation p.R775S 0.08 probably_damaging(0.983) TCGA-44-A47G-01 9 21206819 21206819 G A IFNA10 Missense_Mutation p.T93I 0.15 deleterious(0.02) possibly_damaging(0.737) TCGA-44-A47G-01 9 36170277 36170277 C T CCIN Missense_Mutation p.R260C 0.16 deleterious(0) probably_damaging(0.997) TCGA-44-A47G-01 9 43818105 43818105 G A CNTNAP3B Missense_Mutation p.G331E 0.07 deleterious(0) probably_damaging(0.997) TCGA-44-A47G-01 9 79320607 79320607 T C PRUNE2 Missense_Mutation p.I2195V 0.12 tolerated(0.29) benign(0.006) TCGA-44-A47G-01 X 102842301 102842301 A G TCEAL4 3'UTR 0.10 TCGA-44-A47G-01 X 12734961 12734961 G C FRMPD4 Missense_Mutation p.E795Q 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-44-A47G-01 X 142596970 142596970 C G SPANXN3 Missense_Mutation p.V34L 0.15 tolerated(0.33) benign(0.42) TCGA-44-A47G-01 X 147744204 147744204 C T AFF2 Missense_Mutation p.S319L 0.07 deleterious(0.05) benign(0.171) TCGA-44-A47G-01 X 35985841 35985841 G A CXorf22 Missense_Mutation p.R569H 0.07 tolerated(0.45) benign(0.003) TCGA-44-A47G-01 X 38176670 38176670 C G RPGR Missense_Mutation p.G173A 0.11 probably_damaging(0.994) TCGA-44-A47G-01 X 57935351 57935351 T A ZXDA Missense_Mutation p.I502F 0.07 deleterious(0) probably_damaging(0.998) TCGA-44-A47G-01 X 7870101 7870101 G A PNPLA4 Nonsense_Mutation p.R187* 0.09 TCGA-44-A4SS-01 10 101825111 101825111 C A CPN1 Missense_Mutation p.R198L 0.19 tolerated(0.43) benign(0.003) TCGA-44-A4SS-01 10 105759647 105759647 C G SLK Missense_Mutation p.L269V 0.17 deleterious(0) benign(0.183) TCGA-44-A4SS-01 10 16918969 16918969 C G CUBN Silent p.G3011G 0.11 TCGA-44-A4SS-01 10 22680715 22680715 G T SPAG6 Missense_Mutation p.A355S 0.13 deleterious(0.02) probably_damaging(1) TCGA-44-A4SS-01 10 23482681 23482681 G A PTF1A Missense_Mutation p.G278E 0.07 deleterious(0) unknown(0) TCGA-44-A4SS-01 10 25887762 25887762 T A GPR158 Silent p.A1069A 0.12 TCGA-44-A4SS-01 10 27497291 27497291 T A ACBD5 Nonsense_Mutation p.R430* 0.15 TCGA-44-A4SS-01 10 38246392 38246392 T C ZNF25 Missense_Mutation p.Y33C 0.05 deleterious(0) probably_damaging(0.964) TCGA-44-A4SS-01 10 43883130 43883130 T G HNRNPF Missense_Mutation p.K68T 0.08 tolerated(0.08) benign(0.214) TCGA-44-A4SS-01 10 50118298 50118298 C G LRRC18 Missense_Mutation p.R257P 0.15 deleterious(0.01) benign(0.419) TCGA-44-A4SS-01 10 8007705 8007705 A T TAF3 Missense_Mutation p.K744N 0.08 deleterious(0) benign(0.403) TCGA-44-A4SS-01 11 108380319 108380319 G T EXPH5 Missense_Mutation p.T1972K 0.12 deleterious(0) probably_damaging(0.999) TCGA-44-A4SS-01 11 113650646 113650646 G T CLDN25 Missense_Mutation p.M43I 0.14 deleterious(0.03) benign(0.221) TCGA-44-A4SS-01 11 116693432 116693432 T A APOA4 Missense_Mutation p.N40I 0.15 deleterious(0) probably_damaging(0.921) TCGA-44-A4SS-01 11 117389255 117389255 T C DSCAML1 Missense_Mutation p.D539G 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-44-A4SS-01 11 118375038 118375038 C T KMT2A Missense_Mutation p.R2811C 0.05 probably_damaging(0.997) TCGA-44-A4SS-01 11 118636046 118636046 T C DDX6 Missense_Mutation p.T173A 0.16 deleterious(0.02) benign(0.435) TCGA-44-A4SS-01 11 118948671 118948671 C T VPS11 Silent p.L551L 0.07 TCGA-44-A4SS-01 11 119983130 119983130 C A TRIM29 Missense_Mutation p.A587S 0.11 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-44-A4SS-01 11 123777454 123777454 G T OR8D4 Missense_Mutation p.V106F 0.06 tolerated(0.96) benign(0.031) TCGA-44-A4SS-01 11 123886663 123886663 C G OR10G4 Missense_Mutation p.P128A 0.12 deleterious(0.02) possibly_damaging(0.682) TCGA-44-A4SS-01 11 124789652 124789652 T A HEPN1 Silent p.G2G 0.15 TCGA-44-A4SS-01 11 128359245 128359245 C G ETS1 Missense_Mutation p.E159Q 0.09 deleterious(0.02) possibly_damaging(0.59) TCGA-44-A4SS-01 11 130343371 130343371 C G ADAMTS15 Missense_Mutation p.D836E 0.11 tolerated(0.98) benign(0.001) TCGA-44-A4SS-01 11 130785467 130785467 T C SNX19 Missense_Mutation p.Q123R 0.17 tolerated(0.53) benign(0.004) TCGA-44-A4SS-01 11 21251000 21251000 G C NELL1 Missense_Mutation p.A517P 0.12 tolerated(0.32) benign(0.2) TCGA-44-A4SS-01 11 27378978 27378978 C A CCDC34 Missense_Mutation p.R157L 0.13 deleterious(0) probably_damaging(1) TCGA-44-A4SS-01 11 30925143 30925143 G T DCDC1 Missense_Mutation p.R1466S 0.27 tolerated(0.74) benign(0) TCGA-44-A4SS-01 11 33667445 33667445 G A KIAA1549L Missense_Mutation p.A1578T 0.18 tolerated(0.23) benign(0.015) TCGA-44-A4SS-01 11 3746414 3746414 T C NUP98 Missense_Mutation p.N589S 0.17 tolerated(0.41) benign(0.084) TCGA-44-A4SS-01 11 4608620 4608620 T C OR52I2 Missense_Mutation p.V193A 0.08 tolerated(0.25) possibly_damaging(0.472) TCGA-44-A4SS-01 11 48510588 48510588 G A OR4A47 Missense_Mutation p.G82S 0.16 deleterious_low_confidence(0.02) benign(0.001) TCGA-44-A4SS-01 11 51515704 51515704 G C OR4C46 Silent p.L141L 0.16 TCGA-44-A4SS-01 11 55136143 55136143 C T OR4A15 Nonsense_Mutation p.R262* 0.20 TCGA-44-A4SS-01 11 55563352 55563352 C A OR5D14 Nonsense_Mutation p.C107* 0.20 TCGA-44-A4SS-01 11 58035306 58035306 G A OR10W1 Missense_Mutation p.P9S 0.16 tolerated(1) probably_damaging(1) TCGA-44-A4SS-01 11 59245789 59245789 C G OR4D10 Nonsense_Mutation p.S296* 0.05 TCGA-44-A4SS-01 11 60075608 60075608 A C MS4A4A Missense_Mutation p.H226P 0.08 tolerated(0.37) benign(0.009) TCGA-44-A4SS-01 11 6261342 6261342 G T CNGA4 Silent p.S106S 0.11 TCGA-44-A4SS-01 11 6432502 6432502 G A APBB1 Silent p.L26L 0.18 TCGA-44-A4SS-01 11 74417561 74417561 C T CHRDL2 Missense_Mutation p.E185K 0.08 tolerated(0.06) benign(0.272) TCGA-44-A4SS-01 11 89774402 89774402 G T TRIM49C Missense_Mutation p.G348V 0.19 deleterious(0) probably_damaging(0.934) TCGA-44-A4SS-01 12 101876625 101876625 T G SPIC Missense_Mutation p.I89R 0.04 tolerated(0.28) benign(0.193) TCGA-44-A4SS-01 12 105546208 105546208 A T KIAA1033 Missense_Mutation p.R913W 0.09 deleterious(0) probably_damaging(1) TCGA-44-A4SS-01 12 110252418 110252418 C A TRPV4 Missense_Mutation p.D62Y 0.09 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-44-A4SS-01 12 111758468 111758468 C T CUX2 Silent p.P885P 0.23 TCGA-44-A4SS-01 12 121001395 121001395 C A RNF10 Silent p.L500L 0.08 TCGA-44-A4SS-01 12 12240275 12240275 T G BCL2L14 Missense_Mutation p.F188V 0.07 tolerated(0.55) benign(0.001) TCGA-44-A4SS-01 12 122723166 122723166 C T VPS33A Missense_Mutation p.V424I 0.08 tolerated(0.22) benign(0.033) TCGA-44-A4SS-01 12 129558589 129558589 C A TMEM132D Missense_Mutation p.R1044M 0.10 deleterious(0) probably_damaging(0.992) TCGA-44-A4SS-01 12 132632441 132632441 G - NOC4L Frame_Shift_Del p.W207* 0.12 TCGA-44-A4SS-01 12 13720119 13720119 A T GRIN2B Missense_Mutation p.L813Q 0.12 deleterious(0) probably_damaging(1) TCGA-44-A4SS-01 12 18234245 18234245 G C RERGL Missense_Mutation p.I166M 0.09 tolerated(0.22) benign(0.016) TCGA-44-A4SS-01 12 2659755 2659755 G T CACNA1C Intron 0.21 TCGA-44-A4SS-01 12 27555605 27555605 C T ARNTL2 Missense_Mutation p.S491L 0.07 tolerated(0.18) benign(0.027) TCGA-44-A4SS-01 12 29649572 29649572 T A OVCH1 Missense_Mutation p.S34C 0.13 deleterious(0.01) benign(0.386) TCGA-44-A4SS-01 12 31842036 31842036 T C AMN1 Missense_Mutation p.H203R 0.17 tolerated(0.89) benign(0.004) TCGA-44-A4SS-01 12 4737400 4737400 C T AKAP3 Missense_Mutation p.S223N 0.05 tolerated(0.12) benign(0.007) TCGA-44-A4SS-01 12 49441794 49441794 C T KMT2D Missense_Mutation p.C1397Y 0.07 probably_damaging(0.999) TCGA-44-A4SS-01 12 52886640 52886640 A G KRT6A Silent p.G111G 0.16 TCGA-44-A4SS-01 12 53165928 53165928 C T KRT76 Missense_Mutation p.E363K 0.09 deleterious(0.03) possibly_damaging(0.908) TCGA-44-A4SS-01 12 55641974 55641974 C A OR6C74 Missense_Mutation p.H301Q 0.06 deleterious_low_confidence(0.02) benign(0.033) TCGA-44-A4SS-01 12 5744483 5744483 C T ANO2 Missense_Mutation p.V551M 0.16 deleterious(0.02) probably_damaging(0.933) TCGA-44-A4SS-01 12 57578912 57578912 A T LRP1 Silent p.T2129T 0.06 TCGA-44-A4SS-01 12 62936895 62936895 G T MON2 Missense_Mutation p.V795F 0.07 deleterious(0) probably_damaging(0.997) TCGA-44-A4SS-01 12 65088746 65088746 G T RASSF3 3'UTR 0.29 TCGA-44-A4SS-01 12 71139753 71139753 C A PTPRR Missense_Mutation p.K284N 0.20 deleterious(0.01) possibly_damaging(0.696) TCGA-44-A4SS-01 12 71833872 71833872 C A LGR5 Silent p.S4S 0.07 TCGA-44-A4SS-01 12 76763448 76763448 G C OSBPL8 Missense_Mutation p.L737V 0.06 tolerated(0.59) benign(0.014) TCGA-44-A4SS-01 12 7843285 7843285 G - GDF3 Frame_Shift_Del p.P95Qfs*28 0.10 TCGA-44-A4SS-01 13 20567946 20567946 C - ZMYM2 Frame_Shift_Del p.P246Hfs*3 0.12 TCGA-44-A4SS-01 13 27259883 27259883 G - WASF3 Frame_Shift_Del p.N472Mfs*45 0.13 TCGA-44-A4SS-01 13 33716508 33716508 C A STARD13 Missense_Mutation p.R109L 0.08 deleterious(0) probably_damaging(1) TCGA-44-A4SS-01 13 36049996 36049996 G T MAB21L1 Missense_Mutation p.L94M 0.09 tolerated(0.07) benign(0.213) TCGA-44-A4SS-01 13 41134875 41134875 C A FOXO1 Missense_Mutation p.R251S 0.14 deleterious(0) probably_damaging(0.997) TCGA-44-A4SS-01 13 46541881 46541881 T C ZC3H13 Missense_Mutation p.E1360G 0.27 unknown(0) TCGA-44-A4SS-01 13 52439610 52439610 C T CCDC70 Silent p.S32S 0.11 TCGA-44-A4SS-01 13 52598366 52598366 G T ALG11 Missense_Mutation p.C167F 0.10 tolerated(1) benign(0.001) TCGA-44-A4SS-01 13 53617258 53617258 T A OLFM4 Missense_Mutation p.L197M 0.09 tolerated(0.18) benign(0.08) TCGA-44-A4SS-01 13 58240827 58240827 G T PCDH17 Missense_Mutation p.S886I 0.13 deleterious(0) probably_damaging(0.98) TCGA-44-A4SS-01 13 78472358 78472358 T A EDNRB Missense_Mutation p.S526C 0.09 deleterious(0) probably_damaging(0.975) TCGA-44-A4SS-01 14 103371735 103371735 T G TRAF3 Missense_Mutation p.Y441D 0.17 deleterious(0) probably_damaging(1) TCGA-44-A4SS-01 14 104642724 104642724 C A KIF26A Missense_Mutation p.A1200E 0.25 tolerated(0.26) benign(0.157) TCGA-44-A4SS-01 14 20389554 20389554 C T OR4K5 Silent p.T263T 0.06 TCGA-44-A4SS-01 14 22521191 22521191 C A TRAV21 Nonsense_Mutation p.S71* 0.16 TCGA-44-A4SS-01 14 22521193 22521193 A G TRAV21 Missense_Mutation p.S72G 0.14 tolerated(0.26) benign(0.006) TCGA-44-A4SS-01 14 23842108 23842108 C T IL25 5'UTR 0.27 TCGA-44-A4SS-01 14 29237947 29237947 A G FOXG1 Missense_Mutation p.I488V 0.21 deleterious_low_confidence(0.01) benign(0.141) TCGA-44-A4SS-01 14 63468160 63468160 A G KCNH5 Missense_Mutation p.Y108H 0.27 tolerated(0.17) benign(0.034) TCGA-44-A4SS-01 14 68040045 68040045 C T PLEKHH1 Missense_Mutation p.T594M 0.19 tolerated(0.1) possibly_damaging(0.705) TCGA-44-A4SS-01 14 91356974 91356974 C T RPS6KA5 Missense_Mutation p.D565N 0.10 deleterious(0.03) probably_damaging(1) TCGA-44-A4SS-01 15 35163077 35163077 C A AQR Missense_Mutation p.C1215F 0.07 deleterious(0.01) benign(0.217) TCGA-44-A4SS-01 15 35274610 35274610 C A ZNF770 Missense_Mutation p.K342N 0.08 deleterious(0.02) probably_damaging(0.996) TCGA-44-A4SS-01 15 42743868 42743868 T C ZNF106 Missense_Mutation p.H178R 0.07 tolerated(0.17) benign(0.362) TCGA-44-A4SS-01 15 48707824 48707824 A G FBN1 Missense_Mutation p.S2654P 0.06 possibly_damaging(0.88) TCGA-44-A4SS-01 15 49060478 49060478 T G CEP152 Missense_Mutation p.L652F 0.11 deleterious(0) probably_damaging(0.999) TCGA-44-A4SS-01 15 50474890 50474890 A T SLC27A2 Missense_Mutation p.N89I 0.07 deleterious(0) probably_damaging(0.976) TCGA-44-A4SS-01 15 63019331 63019331 G T TLN2 Missense_Mutation p.G1101C 0.11 deleterious(0) probably_damaging(0.95) TCGA-44-A4SS-01 15 63967119 63967119 T A HERC1 Missense_Mutation p.E2423V 0.09 benign(0.076) TCGA-44-A4SS-01 15 74241873 74241873 A T LOXL1 Missense_Mutation p.Y559F 0.05 deleterious(0.01) probably_damaging(0.988) TCGA-44-A4SS-01 15 74241882 74241882 G A LOXL1 Missense_Mutation p.R562H 0.17 tolerated(0.3) possibly_damaging(0.604) TCGA-44-A4SS-01 15 76426525 76426525 G A C15orf27 5'UTR 0.09 TCGA-44-A4SS-01 15 78290658 78290658 G T TBC1D2B Missense_Mutation p.F912L 0.18 deleterious(0) possibly_damaging(0.771) TCGA-44-A4SS-01 15 80263556 80263556 G A BCL2A1 5'UTR 0.29 TCGA-44-A4SS-01 15 80767500 80767500 G A ARNT2 Silent p.Q186Q 0.05 TCGA-44-A4SS-01 15 88678389 88678389 G C NTRK3 Missense_Mutation p.P383A 0.10 tolerated(0.45) benign(0.001) TCGA-44-A4SS-01 16 12009908 12009908 G C GSPT1 5'Flank 0.14 TCGA-44-A4SS-01 16 14020516 14020516 G A ERCC4 Missense_Mutation p.A163T 0.19 deleterious(0) probably_damaging(0.933) TCGA-44-A4SS-01 16 17294470 17294470 C A XYLT1 Nonsense_Mutation p.E319* 0.17 TCGA-44-A4SS-01 16 17451904 17451904 G T XYLT1 Missense_Mutation p.P123T 0.08 deleterious_low_confidence(0.01) benign(0.018) TCGA-44-A4SS-01 16 18860662 18860662 C T SMG1 Missense_Mutation p.E1834K 0.06 deleterious(0) benign(0.051) TCGA-44-A4SS-01 16 19711876 19711876 G T C16orf62 3'UTR 0.15 TCGA-44-A4SS-01 16 30964924 30964924 C T ORAI3 Missense_Mutation p.S216F 0.07 deleterious(0.02) benign(0.328) TCGA-44-A4SS-01 16 31004124 31004124 G C STX1B 3'UTR 0.09 TCGA-44-A4SS-01 16 3640014 3640014 T C SLX4 Missense_Mutation p.R1209G 0.19 tolerated(0.27) benign(0.001) TCGA-44-A4SS-01 16 50368765 50368765 A T BRD7 Silent p.A248A 0.17 TCGA-44-A4SS-01 16 55725892 55725892 C T SLC6A2 Silent p.V282V 0.15 TCGA-44-A4SS-01 16 56782199 56782199 G A NUP93 Missense_Mutation p.E14K 0.11 deleterious(0.05) benign(0.129) TCGA-44-A4SS-01 16 56903738 56903738 T A SLC12A3 Splice_Site p.X201_splice 0.07 TCGA-44-A4SS-01 16 58633194 58633194 C T CNOT1 Silent p.L16L 0.11 TCGA-44-A4SS-01 16 58757763 58757763 G A GOT2 Silent p.L45L 0.06 TCGA-44-A4SS-01 16 61687968 61687968 T G CDH8 Missense_Mutation p.K648N 0.09 deleterious(0) probably_damaging(0.997) TCGA-44-A4SS-01 16 67694252 67694252 C A ACD Missense_Mutation p.G44C 0.27 deleterious_low_confidence(0.03) benign(0.21) TCGA-44-A4SS-01 16 69726114 69726114 C G NFAT5 Missense_Mutation p.L796V 0.16 probably_damaging(0.99) TCGA-44-A4SS-01 16 71780567 71780567 C A AP1G1 Nonsense_Mutation p.G555* 0.15 TCGA-44-A4SS-01 16 71790027 71790027 C A AP1G1 Missense_Mutation p.G378V 0.13 tolerated(0.1) benign(0.202) TCGA-44-A4SS-01 16 71790028 71790028 C A AP1G1 Missense_Mutation p.G378W 0.13 deleterious(0.01) possibly_damaging(0.824) TCGA-44-A4SS-01 16 76513434 76513434 C G CNTNAP4 Silent p.T554T 0.17 TCGA-44-A4SS-01 16 81253804 81253804 C A PKD1L2 Missense_Mutation p.G58W 0.10 deleterious(0.02) probably_damaging(0.975) TCGA-44-A4SS-01 16 84690870 84690870 G T KLHL36 Nonsense_Mutation p.E153* 0.18 TCGA-44-A4SS-01 16 86544300 86544300 G T FOXF1 Missense_Mutation p.G42V 0.11 deleterious(0) probably_damaging(0.987) TCGA-44-A4SS-01 16 86601175 86601175 C G FOXC2 Missense_Mutation p.I78M 0.12 deleterious(0) probably_damaging(0.999) TCGA-44-A4SS-01 16 89828400 89828400 G A FANCA Silent p.L937L 0.08 TCGA-44-A4SS-01 17 10430275 10430275 G A MYH2 Nonsense_Mutation p.Q1324* 0.20 TCGA-44-A4SS-01 17 10430276 10430276 C A MYH2 Missense_Mutation p.R1323S 0.22 deleterious(0.01) possibly_damaging(0.551) TCGA-44-A4SS-01 17 13399897 13399897 C A HS3ST3A1 Missense_Mutation p.D280Y 0.08 deleterious(0) probably_damaging(0.996) TCGA-44-A4SS-01 17 27999015 27999015 T C SSH2 Silent p.E222E 0.13 TCGA-44-A4SS-01 17 3182006 3182006 A G OR3A2 Missense_Mutation p.L75P 0.14 deleterious(0) probably_damaging(0.986) TCGA-44-A4SS-01 17 33749699 33749699 G A SLFN12 Silent p.L117L 0.06 TCGA-44-A4SS-01 17 37186536 37186536 A T CTD-2206N4.2 5'Flank 0.70 TCGA-44-A4SS-01 17 48190142 48190142 A T SAMD14 3'UTR 0.19 TCGA-44-A4SS-01 17 5462840 5462840 C A NLRP1 Silent p.P392P 0.31 TCGA-44-A4SS-01 17 60342474 60342474 G - TBC1D3P2 3'Flank 0.15 TCGA-44-A4SS-01 17 60758261 60758261 C G MRC2 Silent p.A858A 0.09 TCGA-44-A4SS-01 17 65120094 65120094 G A HELZ Nonsense_Mutation p.Q1142* 0.10 TCGA-44-A4SS-01 17 65163733 65163736 AATA - HELZ Frame_Shift_Del p.L536Yfs*8 0.18 TCGA-44-A4SS-01 17 6980286 6980286 G T CLEC10A Missense_Mutation p.L69M 0.20 tolerated(0.05) probably_damaging(0.974) TCGA-44-A4SS-01 17 72324566 72324566 G A KIF19 Silent p.V14V 0.36 TCGA-44-A4SS-01 17 7577547 7577547 C A TP53 Missense_Mutation p.G245V 0.20 deleterious(0) probably_damaging(1) TCGA-44-A4SS-01 17 7577548 7577548 C A TP53 Missense_Mutation p.G245C 0.20 deleterious(0) probably_damaging(1) TCGA-44-A4SS-01 17 80439066 80439066 G T NARF Missense_Mutation p.A250S 0.19 deleterious(0) benign(0.44) TCGA-44-A4SS-01 17 8044235 8044235 C A PER1 3'UTR 0.19 TCGA-44-A4SS-01 17 81006548 81006548 A G B3GNTL1 Silent p.S58S 0.14 TCGA-44-A4SS-01 18 10681678 10681678 G A PIEZO2 Nonsense_Mutation p.Q2474* 0.14 TCGA-44-A4SS-01 18 28612174 28612174 G T DSC3 Missense_Mutation p.D46E 0.12 tolerated(1) benign(0.249) TCGA-44-A4SS-01 18 28934766 28934766 C A DSG1 Silent p.V869V 0.20 TCGA-44-A4SS-01 18 30267170 30267170 G T KLHL14 Silent p.R396R 0.13 TCGA-44-A4SS-01 18 42530307 42530307 G A SETBP1 Silent p.K334K 0.20 TCGA-44-A4SS-01 18 43462398 43462398 T A EPG5 Missense_Mutation p.R1787W 0.10 deleterious(0) probably_damaging(0.987) TCGA-44-A4SS-01 18 51820886 51820886 G T POLI 3'UTR 0.27 TCGA-44-A4SS-01 18 56363625 56363625 C G MALT1 Nonsense_Mutation p.S135* 0.14 TCGA-44-A4SS-01 18 56585970 56585970 G T ZNF532 Missense_Mutation p.D151Y 0.18 tolerated(0.08) probably_damaging(0.926) TCGA-44-A4SS-01 18 61305019 61305019 G T SERPINB4 Missense_Mutation p.F369L 0.18 deleterious(0) probably_damaging(0.992) TCGA-44-A4SS-01 18 63530030 63530031 - GA CDH7 Frame_Shift_Ins p.V582Afs*10 0.17 TCGA-44-A4SS-01 18 63530032 63530032 C T CDH7 Silent p.R581R 0.17 TCGA-44-A4SS-01 18 6943263 6943263 C A LAMA1 Missense_Mutation p.G2995W 0.19 deleterious(0) probably_damaging(1) TCGA-44-A4SS-01 18 70450945 70450945 C T NETO1 Missense_Mutation p.R279Q 0.18 tolerated(0.05) benign(0.2) TCGA-44-A4SS-01 18 77067081 77067081 A T ATP9B Silent p.R540R 0.13 TCGA-44-A4SS-01 18 8376571 8376571 G A PTPRM Silent p.R1146R 0.08 TCGA-44-A4SS-01 19 10418891 10418891 T G ZGLP1 Missense_Mutation p.D156A 0.22 deleterious(0) probably_damaging(0.937) TCGA-44-A4SS-01 19 10597367 10597367 G - KEAP1 Frame_Shift_Del p.C613Afs*59 0.12 TCGA-44-A4SS-01 19 12949441 12949441 G A MAST1 Missense_Mutation p.G19S 0.08 tolerated_low_confidence(0.55) benign(0.002) TCGA-44-A4SS-01 19 13065227 13065227 C A GADD45GIP1 Missense_Mutation p.R155L 0.21 tolerated(0.14) benign(0.042) TCGA-44-A4SS-01 19 14938443 14938443 G T OR7A5 Missense_Mutation p.A204E 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.506) TCGA-44-A4SS-01 19 14952492 14952492 C A OR7A10 Silent p.L66L 0.18 TCGA-44-A4SS-01 19 14991322 14991322 G T OR7A17 Silent p.T282T 0.20 TCGA-44-A4SS-01 19 22817231 22817231 G A ZNF492 5'UTR 0.18 TCGA-44-A4SS-01 19 30164955 30164955 A G PLEKHF1 Missense_Mutation p.N70S 0.08 tolerated(0.64) benign(0.009) TCGA-44-A4SS-01 19 31039884 31039884 G A ZNF536 Missense_Mutation p.G1120S 0.12 tolerated_low_confidence(0.18) benign(0.003) TCGA-44-A4SS-01 19 3281300 3281300 C G CELF5 Missense_Mutation p.S236C 0.14 tolerated(0.2) benign(0.004) TCGA-44-A4SS-01 19 35530609 35530609 T A HPN 5'Flank 0.12 TCGA-44-A4SS-01 19 36050797 36050797 C T ATP4A Missense_Mutation p.M322I 0.10 tolerated(0.25) benign(0.04) TCGA-44-A4SS-01 19 36221470 36221470 G C KMT2B Silent p.L1743L 0.13 TCGA-44-A4SS-01 19 36293101 36293101 A G PRODH2 Missense_Mutation p.L473P 0.19 deleterious(0) probably_damaging(0.992) TCGA-44-A4SS-01 19 36564398 36564398 G A WDR62 Missense_Mutation p.E400K 0.16 tolerated(0.14) possibly_damaging(0.669) TCGA-44-A4SS-01 19 37974962 37974962 C G ZNF570 Missense_Mutation p.F146L 0.10 tolerated(0.41) benign(0) TCGA-44-A4SS-01 19 39591587 39591587 A T PAPL Splice_Site p.X270_splice 0.10 TCGA-44-A4SS-01 19 39899295 39899295 C T ZFP36 Missense_Mutation p.P319S 0.17 tolerated(0.88) benign(0.009) TCGA-44-A4SS-01 19 4318918 4318918 C A FSD1 Missense_Mutation p.R337S 0.18 deleterious(0) probably_damaging(0.993) TCGA-44-A4SS-01 19 44244333 44244333 C G SMG9 Missense_Mutation p.E247Q 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-44-A4SS-01 19 44590660 44590660 C G ZNF284 Nonsense_Mutation p.Y343* 0.07 TCGA-44-A4SS-01 19 44610912 44610912 G T ZNF224 Missense_Mutation p.G200V 0.12 deleterious(0.03) probably_damaging(0.998) TCGA-44-A4SS-01 19 45262867 45262867 A T BCL3 Missense_Mutation p.S454C 0.18 deleterious_low_confidence(0) unknown(0) TCGA-44-A4SS-01 19 45477825 45477825 G T CLPTM1 Nonsense_Mutation p.E147* 0.15 TCGA-44-A4SS-01 19 46417799 46417799 C T NANOS2 Silent p.G51G 0.18 TCGA-44-A4SS-01 19 46815502 46815502 G T HIF3A Silent p.A285A 0.17 TCGA-44-A4SS-01 19 48725103 48725103 C A CARD8 Missense_Mutation p.D349Y 0.09 deleterious(0) probably_damaging(0.972) TCGA-44-A4SS-01 19 49557613 49557613 G A CGB7 Missense_Mutation p.P145S 0.15 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-44-A4SS-01 19 51857841 51857841 G C ETFB Missense_Mutation p.L18V 0.18 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-44-A4SS-01 19 52477654 52477654 C T ZNF350 5'UTR 0.13 TCGA-44-A4SS-01 19 53432595 53432595 C A ZNF321P Missense_Mutation p.G88V 0.14 tolerated(0.23) probably_damaging(0.969) TCGA-44-A4SS-01 19 5455700 5455700 G T ZNRF4 Silent p.A66A 0.08 TCGA-44-A4SS-01 19 56300736 56300736 A T NLRP11 Missense_Mutation p.I848N 0.11 tolerated(0.13) possibly_damaging(0.571) TCGA-44-A4SS-01 19 57175297 57175297 C T ZNF835 Missense_Mutation p.G424S 0.21 deleterious(0.04) probably_damaging(1) TCGA-44-A4SS-01 19 58048905 58048905 C G ZNF549 Nonsense_Mutation p.S178* 0.09 TCGA-44-A4SS-01 19 58058874 58058874 G C ZNF550 Silent p.L205L 0.06 TCGA-44-A4SS-01 19 58579564 58579564 T C ZNF135 Missense_Mutation p.I595T 0.05 tolerated(0.19) benign(0.016) TCGA-44-A4SS-01 19 6693471 6693471 T G C3 Missense_Mutation p.Q1061P 0.29 deleterious(0.02) possibly_damaging(0.802) TCGA-44-A4SS-01 19 7122757 7122757 G A INSR Missense_Mutation p.L1133F 0.13 deleterious(0.03) probably_damaging(0.987) TCGA-44-A4SS-01 19 7598408 7598408 G T MCOLN1 Splice_Site p.X526_splice 0.16 TCGA-44-A4SS-01 19 9059351 9059351 C T MUC16 Missense_Mutation p.M9365I 0.13 unknown(0) TCGA-44-A4SS-01 19 9070965 9070965 G T MUC16 Missense_Mutation p.T5494K 0.19 unknown(0) TCGA-44-A4SS-01 19 9324816 9324816 C A OR7D4 Missense_Mutation p.G233V 0.17 deleterious(0) benign(0.392) TCGA-44-A4SS-01 1 103343506 103343506 G T COL11A1 3'UTR 0.12 TCGA-44-A4SS-01 1 104160684 104160684 G A AMY2A Missense_Mutation p.E93K 0.08 deleterious(0.03) benign(0.382) TCGA-44-A4SS-01 1 107867376 107867376 T C NTNG1 Missense_Mutation p.M240T 0.13 deleterious(0.04) probably_damaging(0.96) TCGA-44-A4SS-01 1 109734402 109734402 A G KIAA1324 Missense_Mutation p.K534E 0.07 deleterious(0) probably_damaging(0.979) TCGA-44-A4SS-01 1 109806903 109806903 T A CELSR2 Missense_Mutation p.H1735Q 0.14 tolerated(1) benign(0.017) TCGA-44-A4SS-01 1 109806904 109806904 G T CELSR2 Missense_Mutation p.G1736C 0.15 deleterious(0) probably_damaging(0.995) TCGA-44-A4SS-01 1 111773562 111773562 C A CHI3L2 Missense_Mutation p.T90N 0.13 tolerated(1) benign(0.014) TCGA-44-A4SS-01 1 114442437 114442437 C T AP4B1 Intron 0.10 TCGA-44-A4SS-01 1 119427515 119427515 C A TBX15 Missense_Mutation p.G444V 0.07 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-44-A4SS-01 1 119934839 119934839 G C HAO2 Missense_Mutation p.G293A 0.04 deleterious(0) probably_damaging(1) TCGA-44-A4SS-01 1 119962112 119962112 T A HSD3B2 Missense_Mutation p.C72S 0.16 deleterious(0) probably_damaging(0.993) TCGA-44-A4SS-01 1 151681753 151681753 G T CELF3 Missense_Mutation p.P117T 0.04 deleterious(0.02) benign(0.012) TCGA-44-A4SS-01 1 151993707 151993707 C G NBPF18P RNA 0.07 TCGA-44-A4SS-01 1 152084594 152084594 C T TCHH Missense_Mutation p.E367K 0.10 unknown(0) TCGA-44-A4SS-01 1 152186158 152186158 A T HRNR Silent p.S2649S 0.29 TCGA-44-A4SS-01 1 152552371 152552371 G T LCE3D Silent p.P14P 0.22 TCGA-44-A4SS-01 1 154233385 154233385 G T UBAP2L Missense_Mutation p.G866C 0.29 deleterious(0) probably_damaging(0.995) TCGA-44-A4SS-01 1 156504385 156504385 T C IQGAP3 Silent p.L1216L 0.24 TCGA-44-A4SS-01 1 156670413 156670413 C G CRABP2 Missense_Mutation p.C96S 0.11 deleterious(0) benign(0.036) TCGA-44-A4SS-01 1 157773696 157773696 G A FCRL1 Silent p.C86C 0.13 TCGA-44-A4SS-01 1 158261143 158261143 G C CD1C Missense_Mutation p.G94A 0.21 tolerated(0.11) benign(0.01) TCGA-44-A4SS-01 1 158324281 158324281 G T CD1E Missense_Mutation p.W58L 0.05 deleterious(0) probably_damaging(0.998) TCGA-44-A4SS-01 1 158627383 158627383 C A SPTA1 Missense_Mutation p.A897S 0.21 tolerated(0.06) possibly_damaging(0.771) TCGA-44-A4SS-01 1 158669643 158669643 T A OR6K2 Missense_Mutation p.Y267F 0.10 tolerated(0.29) benign(0.06) TCGA-44-A4SS-01 1 159410054 159410054 C T OR10J1 Missense_Mutation p.T169M 0.26 deleterious(0.02) possibly_damaging(0.707) TCGA-44-A4SS-01 1 16060378 16060378 G T PLEKHM2 Missense_Mutation p.Q1003H 0.08 deleterious(0) probably_damaging(0.998) TCGA-44-A4SS-01 1 161569446 161569446 C T FCGR2C Intron 0.45 TCGA-44-A4SS-01 1 163039171 163039171 A G RGS4 Missense_Mutation p.D63G 0.25 tolerated_low_confidence(0.36) benign(0) TCGA-44-A4SS-01 1 175372402 175372402 C A TNR Nonsense_Mutation p.E284* 0.26 TCGA-44-A4SS-01 1 178427453 178427453 C - RASAL2 Frame_Shift_Del p.Q1010Rfs*10 0.08 TCGA-44-A4SS-01 1 185972977 185972977 G T HMCN1 Splice_Site p.X1492_splice 0.16 TCGA-44-A4SS-01 1 185985327 185985327 G T HMCN1 Missense_Mutation p.S1716I 0.13 probably_damaging(0.998) TCGA-44-A4SS-01 1 186123036 186123036 C A HMCN1 Missense_Mutation p.T5058K 0.11 probably_damaging(0.966) TCGA-44-A4SS-01 1 192547379 192547379 T A RGS1 Missense_Mutation p.L103Q 0.08 deleterious(0) probably_damaging(1) TCGA-44-A4SS-01 1 193121524 193121524 A G CDC73 Missense_Mutation p.K308E 0.28 deleterious(0.02) possibly_damaging(0.595) TCGA-44-A4SS-01 1 196302978 196302978 C A KCNT2 Nonsense_Mutation p.E666* 0.18 TCGA-44-A4SS-01 1 196436869 196436869 G T KCNT2 Missense_Mutation p.N169K 0.07 deleterious(0) probably_damaging(0.968) TCGA-44-A4SS-01 1 196762604 196762604 G A CFHR3 Silent p.V318V 0.08 TCGA-44-A4SS-01 1 199996854 199996854 C G NR5A2 5'UTR 0.25 TCGA-44-A4SS-01 1 201294890 201294890 C T PKP1 Missense_Mutation p.P698L 0.21 deleterious(0) probably_damaging(0.999) TCGA-44-A4SS-01 1 202462243 202462243 G C PPP1R12B Missense_Mutation p.G648A 0.21 deleterious(0.02) possibly_damaging(0.863) TCGA-44-A4SS-01 1 209936007 209936007 G T TRAF3IP3 Missense_Mutation p.G165C 0.18 deleterious(0) probably_damaging(0.998) TCGA-44-A4SS-01 1 214507488 214507488 G T SMYD2 Intron 0.19 TCGA-44-A4SS-01 1 214788275 214788275 A T CENPF Missense_Mutation p.H88L 0.13 probably_damaging(0.996) TCGA-44-A4SS-01 1 215751377 215751377 G T KCTD3 Missense_Mutation p.R117L 0.20 deleterious(0.02) probably_damaging(0.987) TCGA-44-A4SS-01 1 216348676 216348676 C T USH2A Silent p.T1515T 0.29 TCGA-44-A4SS-01 1 22176868 22176868 C A HSPG2 Missense_Mutation p.G2428C 0.21 possibly_damaging(0.779) TCGA-44-A4SS-01 1 221879722 221879722 C A DUSP10 Missense_Mutation p.A300S 0.04 tolerated(0.51) benign(0.001) TCGA-44-A4SS-01 1 228487601 228487601 T A OBSCN Missense_Mutation p.I4498K 0.24 possibly_damaging(0.702) TCGA-44-A4SS-01 1 232577115 232577115 G C SIPA1L2 Silent p.S1188S 0.14 TCGA-44-A4SS-01 1 247654476 247654476 G C OR2W5 RNA 0.12 TCGA-44-A4SS-01 1 248436290 248436290 T A OR2T33 Missense_Mutation p.Y276F 0.05 deleterious(0) probably_damaging(0.993) TCGA-44-A4SS-01 1 248513002 248513002 C A OR14C36 Nonsense_Mutation p.S309* 0.15 TCGA-44-A4SS-01 1 248525562 248525562 A C OR2T4 Missense_Mutation p.Y227S 0.12 deleterious(0) possibly_damaging(0.904) TCGA-44-A4SS-01 1 31230536 31230536 G A LAPTM5 Silent p.I19I 0.15 TCGA-44-A4SS-01 1 33760842 33760842 C T ZNF362 Missense_Mutation p.S361L 0.17 deleterious(0) possibly_damaging(0.704) TCGA-44-A4SS-01 1 37267442 37267442 C A GRIK3 3'UTR 0.11 TCGA-44-A4SS-01 1 43906967 43906967 G T SZT2 Missense_Mutation p.R2419L 0.09 deleterious(0.02) possibly_damaging(0.493) TCGA-44-A4SS-01 1 44437368 44437368 G C DPH2 Missense_Mutation p.G265A 0.05 tolerated(0.06) benign(0.027) TCGA-44-A4SS-01 1 47746353 47746353 G A STIL Missense_Mutation p.P593S 0.05 tolerated(0.65) benign(0.015) TCGA-44-A4SS-01 1 52704043 52704043 G C ZFYVE9 Missense_Mutation p.L318F 0.04 tolerated_low_confidence(0.17) benign(0.008) TCGA-44-A4SS-01 1 6007177 6007177 C A NPHP4 Missense_Mutation p.G369V 0.12 deleterious(0.03) benign(0.099) TCGA-44-A4SS-01 1 70452010 70452010 A G LRRC7 Missense_Mutation p.E253G 0.11 deleterious(0.02) benign(0.028) TCGA-44-A4SS-01 1 74507479 74507479 G - LRRIQ3 Frame_Shift_Del p.P379Lfs*26 0.12 TCGA-44-A4SS-01 1 75037419 75037419 G T C1orf173 Missense_Mutation p.N1325K 0.14 tolerated(0.88) benign(0.135) TCGA-44-A4SS-01 1 77093236 77093236 C A ST6GALNAC3 Silent p.T241T 0.20 TCGA-44-A4SS-01 1 78338687 78338687 A T FAM73A Splice_Site p.X522_splice 0.10 TCGA-44-A4SS-01 1 79093907 79093907 A G IFI44L Missense_Mutation p.T103A 0.10 tolerated(0.54) benign(0.007) TCGA-44-A4SS-01 1 9164643 9164643 G A GPR157 Silent p.L281L 0.11 TCGA-44-A4SS-01 1 94546095 94546095 C A ABCA4 Missense_Mutation p.K346N 0.13 deleterious(0.04) probably_damaging(0.979) TCGA-44-A4SS-01 1 99358545 99358545 G T LPPR5 3'UTR 0.16 TCGA-44-A4SS-01 20 1538295 1538295 G A RP4-576H24.4 Intron 0.08 TCGA-44-A4SS-01 20 1552626 1552626 G T SIRPB1 Missense_Mutation p.T164K 0.16 deleterious(0.05) benign(0.081) TCGA-44-A4SS-01 20 17475130 17475130 C T BFSP1 Silent p.Q529Q 0.09 TCGA-44-A4SS-01 20 21695491 21695491 C A PAX1 3'UTR 0.11 TCGA-44-A4SS-01 20 2380966 2380966 G A TGM6 Missense_Mutation p.G289R 0.11 deleterious(0) probably_damaging(1) TCGA-44-A4SS-01 20 3324334 3324334 T A C20orf194 Silent p.I278I 0.15 TCGA-44-A4SS-01 20 33345052 33345052 C A NCOA6 Missense_Mutation p.G500V 0.21 benign(0.406) TCGA-44-A4SS-01 20 40112039 40112039 G C CHD6 Missense_Mutation p.P793R 0.12 deleterious(0.03) probably_damaging(1) TCGA-44-A4SS-01 20 40126168 40126168 G A CHD6 Intron 0.05 TCGA-44-A4SS-01 20 43850823 43850823 G T SEMG2 Missense_Mutation p.G184C 0.13 deleterious(0.02) probably_damaging(0.994) TCGA-44-A4SS-01 20 44663642 44663642 G T SLC12A5 Missense_Mutation p.K59N 0.16 tolerated(0.1) benign(0.142) TCGA-44-A4SS-01 20 52645240 52645240 C A BCAS1 Missense_Mutation p.W138C 0.11 tolerated(0.19) benign(0.141) TCGA-44-A4SS-01 20 5930980 5930997 GTCGCCGTCGCGGATGCG - TRMT6 In_Frame_Del p.R19_D24del 0.12 TCGA-44-A4SS-01 20 60578833 60578833 G A TAF4 Silent p.I775I 0.30 TCGA-44-A4SS-01 20 60892525 60892525 C A LAMA5 Missense_Mutation p.G2463W 0.17 possibly_damaging(0.528) TCGA-44-A4SS-01 20 60893644 60893644 G C LAMA5 Missense_Mutation p.Q2369E 0.31 benign(0.012) TCGA-44-A4SS-01 20 60900472 60900472 C A LAMA5 Missense_Mutation p.R1810M 0.21 benign(0.123) TCGA-44-A4SS-01 20 61919105 61919105 G T ARFGAP1 Missense_Mutation p.W375C 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-A4SS-01 21 19666685 19666685 C T TMPRSS15 Nonsense_Mutation p.W796* 0.06 TCGA-44-A4SS-01 21 41710195 41710195 T C DSCAM Missense_Mutation p.K539R 0.17 tolerated(0.12) possibly_damaging(0.649) TCGA-44-A4SS-01 21 45389112 45389112 C T AGPAT3 Silent p.T154T 0.17 TCGA-44-A4SS-01 21 46021013 46021013 C A KRTAP10-7 Silent p.I164I 0.13 TCGA-44-A4SS-01 21 46021507 46021507 C G KRTAP10-7 Missense_Mutation p.P329R 0.06 deleterious(0.02) unknown(0) TCGA-44-A4SS-01 21 46321536 46321536 G T ITGB2 Missense_Mutation p.F204L 0.07 deleterious(0) probably_damaging(0.978) TCGA-44-A4SS-01 22 19504397 19504397 C T CDC45 Silent p.H571H 0.15 TCGA-44-A4SS-01 22 22682066 22682066 T G IGLV1-50 Missense_Mutation p.F83C 0.09 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-44-A4SS-01 22 26688868 26688868 C G SEZ6L Silent p.P197P 0.17 TCGA-44-A4SS-01 22 30738815 30738815 G A SF3A1 Silent p.N235N 0.11 TCGA-44-A4SS-01 22 38229018 38229018 G C ANKRD54 Missense_Mutation p.L223V 0.08 deleterious(0) probably_damaging(0.984) TCGA-44-A4SS-01 2 103136408 103136408 G T SLC9A4 Silent p.R604R 0.14 TCGA-44-A4SS-01 2 109384162 109384162 C G RANBP2 Missense_Mutation p.D2389E 0.06 tolerated(0.28) benign(0.015) TCGA-44-A4SS-01 2 11756756 11756756 G T GREB1 Splice_Site p.X1108_splice 0.12 TCGA-44-A4SS-01 2 122125321 122125321 G C CLASP1 Missense_Mutation p.N1243K 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-44-A4SS-01 2 130832835 130832835 C T POTEF Missense_Mutation p.R737H 0.15 tolerated_low_confidence(0.45) benign(0) TCGA-44-A4SS-01 2 130869662 130869662 G T POTEF Missense_Mutation p.P275T 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-A4SS-01 2 135870742 135870742 G T RAB3GAP1 Silent p.V128V 0.13 TCGA-44-A4SS-01 2 138739082 138739082 T G HNMT Intron 0.11 TCGA-44-A4SS-01 2 141819675 141819675 A T LRP1B Missense_Mutation p.V394E 0.06 possibly_damaging(0.727) TCGA-44-A4SS-01 2 152226737 152226737 G T TNFAIP6 Missense_Mutation p.D200Y 0.08 deleterious(0.01) probably_damaging(0.982) TCGA-44-A4SS-01 2 152553972 152553972 C T NEB Splice_Site p.X420_splice 0.10 TCGA-44-A4SS-01 2 159517965 159517965 C T PKP4 Intron 0.12 TCGA-44-A4SS-01 2 169763195 169763195 G C G6PC2 Missense_Mutation p.W154C 0.10 deleterious(0) probably_damaging(0.926) TCGA-44-A4SS-01 2 174828613 174828613 T G SP3 Splice_Site p.X53_splice 0.22 TCGA-44-A4SS-01 2 175962273 175962273 C T ATF2 Missense_Mutation p.D293N 0.05 tolerated(0.86) benign(0.006) TCGA-44-A4SS-01 2 175979528 175979528 G A ATF2 Silent p.P172P 0.16 TCGA-44-A4SS-01 2 178080266 178080266 G T HNRNPA3 Splice_Site p.X25_splice 0.18 TCGA-44-A4SS-01 2 178482620 178482620 A T TTC30A Silent p.A270A 0.19 TCGA-44-A4SS-01 2 178981057 178981057 C G RBM45 Missense_Mutation p.I123M 0.12 deleterious(0.02) probably_damaging(0.989) TCGA-44-A4SS-01 2 179642521 179642521 C G TTN Missense_Mutation p.V1464L 0.06 TCGA-44-A4SS-01 2 185800547 185800547 G A ZNF804A Missense_Mutation p.V142I 0.09 deleterious(0) probably_damaging(0.956) TCGA-44-A4SS-01 2 187531956 187531956 G T ITGAV Nonsense_Mutation p.G776* 0.15 TCGA-44-A4SS-01 2 1926497 1926497 C T MYT1L Silent p.E348E 0.09 TCGA-44-A4SS-01 2 20494238 20494238 C A PUM2 Missense_Mutation p.G351W 0.15 deleterious(0) probably_damaging(1) TCGA-44-A4SS-01 2 219754758 219754758 C T WNT10A Silent p.H143H 0.19 TCGA-44-A4SS-01 2 220412305 220412305 C T TMEM198 Nonsense_Mutation p.R82* 0.19 TCGA-44-A4SS-01 2 228881511 228881511 C T SPHKAP Silent p.A1353A 0.17 TCGA-44-A4SS-01 2 228881903 228881903 G T SPHKAP Missense_Mutation p.L1223M 0.14 deleterious(0) probably_damaging(0.98) TCGA-44-A4SS-01 2 231307808 231307808 G A SP100 Missense_Mutation p.M88I 0.17 deleterious(0.05) benign(0.043) TCGA-44-A4SS-01 2 231973824 231973824 C T HTR2B Missense_Mutation p.D285N 0.18 tolerated(0.19) benign(0.024) TCGA-44-A4SS-01 2 233899005 233899005 C T NEU2 Silent p.V127V 0.13 TCGA-44-A4SS-01 2 239040097 239040097 C T ESPNL Silent p.A914A 0.10 TCGA-44-A4SS-01 2 240969720 240969720 G T OR6B2 Missense_Mutation p.L43M 0.07 tolerated(0.12) benign(0.141) TCGA-44-A4SS-01 2 240985363 240985363 G T OR6B3 Missense_Mutation p.L43M 0.23 tolerated(0.13) benign(0.153) TCGA-44-A4SS-01 2 241683419 241683419 A T KIF1A Missense_Mutation p.F1175Y 0.23 deleterious(0) probably_damaging(0.993) TCGA-44-A4SS-01 2 242092999 242092999 G T PPP1R7 Missense_Mutation p.R54L 0.13 tolerated(0.31) unknown(0) TCGA-44-A4SS-01 2 25180693 25180693 C A DNAJC27 Missense_Mutation p.V131F 0.13 deleterious(0) probably_damaging(0.995) TCGA-44-A4SS-01 2 27456887 27456887 G A CAD Silent p.V1137V 0.13 TCGA-44-A4SS-01 2 27745432 27745432 C G GCKR Missense_Mutation p.H560D 0.23 deleterious(0.01) probably_damaging(0.964) TCGA-44-A4SS-01 2 28851985 28851985 G T PLB1 Missense_Mutation p.V1251L 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-44-A4SS-01 2 31565098 31565098 C A XDH Missense_Mutation p.G1157V 0.14 deleterious(0) probably_damaging(1) TCGA-44-A4SS-01 2 3652038 3652038 G T COLEC11 Missense_Mutation p.Q50H 0.11 tolerated(0.5) benign(0.015) TCGA-44-A4SS-01 2 39213261 39213261 G A SOS1 Missense_Mutation p.P1236S 0.10 tolerated_low_confidence(0.15) probably_damaging(0.968) TCGA-44-A4SS-01 2 39411790 39411790 T C CDKL4 Splice_Site p.X246_splice 0.14 TCGA-44-A4SS-01 2 40657159 40657159 T A SLC8A1 Missense_Mutation p.M88L 0.13 tolerated(0.48) benign(0.042) TCGA-44-A4SS-01 2 44132864 44132864 T G LRPPRC Missense_Mutation p.I1111L 0.14 deleterious(0.04) benign(0.076) TCGA-44-A4SS-01 2 44457451 44457451 C G PPM1B Intron 0.21 TCGA-44-A4SS-01 2 48573347 48573347 A G FOXN2 5'UTR 0.20 TCGA-44-A4SS-01 2 50850546 50850546 C A NRXN1 Missense_Mutation p.G380V 0.13 deleterious(0) probably_damaging(1) TCGA-44-A4SS-01 2 55449427 55449427 T G CLHC1 Missense_Mutation p.S41R 0.12 tolerated(0.11) benign(0.001) TCGA-44-A4SS-01 2 6991649 6991649 C T CMPK2 Silent p.L386L 0.10 TCGA-44-A4SS-01 2 71592748 71592748 C G ZNF638 Missense_Mutation p.S636C 0.10 tolerated(0.09) benign(0.006) TCGA-44-A4SS-01 2 72362527 72362527 G A CYP26B1 Missense_Mutation p.H151Y 0.10 deleterious(0.04) possibly_damaging(0.79) TCGA-44-A4SS-01 2 85769168 85769168 G C MAT2A Intron 0.11 TCGA-44-A4SS-01 2 89513162 89513162 G A IGKV1-27 Silent p.L33L 0.12 TCGA-44-A4SS-01 2 95541471 95541471 G T TEKT4 Missense_Mutation p.D359Y 0.10 deleterious(0) probably_damaging(0.992) TCGA-44-A4SS-01 2 99767207 99767207 G C C2ORF15 Silent p.G96G 0.11 TCGA-44-A4SS-01 3 10443779 10443779 T G ATP2B2 Missense_Mutation p.K217N 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-44-A4SS-01 3 108072463 108072463 A G HHLA2 Missense_Mutation p.D85G 0.10 tolerated(0.05) possibly_damaging(0.673) TCGA-44-A4SS-01 3 112545958 112545958 C T CD200R1L Nonsense_Mutation p.W187* 0.27 TCGA-44-A4SS-01 3 112736346 112736346 G T C3orf17 Nonsense_Mutation p.Y70* 0.11 TCGA-44-A4SS-01 3 121204000 121204000 A T POLQ Missense_Mutation p.D1887E 0.12 tolerated(0.14) benign(0.04) TCGA-44-A4SS-01 3 125876325 125876325 C A ALDH1L1 Missense_Mutation p.G140V 0.04 deleterious_low_confidence(0) possibly_damaging(0.789) TCGA-44-A4SS-01 3 128181853 128181853 G T DNAJB8 Missense_Mutation p.A79D 0.07 tolerated(0.06) benign(0.092) TCGA-44-A4SS-01 3 133663999 133663999 G A SLCO2A1 Silent p.L467L 0.09 TCGA-44-A4SS-01 3 136573597 136573597 T A SLC35G2 Missense_Mutation p.F99I 0.18 tolerated(0.45) benign(0.049) TCGA-44-A4SS-01 3 140178489 140178489 C A CLSTN2 Missense_Mutation p.P367H 0.07 deleterious(0) probably_damaging(0.999) TCGA-44-A4SS-01 3 141011680 141011680 G T ACPL2 Missense_Mutation p.R359L 0.19 deleterious(0.01) probably_damaging(0.988) TCGA-44-A4SS-01 3 146246550 146246550 C A PLSCR1 Missense_Mutation p.G55C 0.06 deleterious(0.02) benign(0.439) TCGA-44-A4SS-01 3 14861878 14861878 G T FGD5 Missense_Mutation p.V434L 0.11 tolerated_low_confidence(0.07) benign(0.248) TCGA-44-A4SS-01 3 154146887 154146887 C A GPR149 Missense_Mutation p.G173V 0.13 deleterious(0.03) probably_damaging(0.932) TCGA-44-A4SS-01 3 155861016 155861016 G T KCNAB1 Intron 0.08 TCGA-44-A4SS-01 3 157823829 157823829 G T SHOX2 5'UTR 0.09 TCGA-44-A4SS-01 3 160134080 160134080 C A SMC4 Silent p.I438I 0.17 TCGA-44-A4SS-01 3 160146596 160146596 A T SMC4 Missense_Mutation p.L887F 0.07 deleterious(0) probably_damaging(0.985) TCGA-44-A4SS-01 3 16399487 16399487 G A RFTN1 Silent p.T366T 0.08 TCGA-44-A4SS-01 3 164758731 164758731 T A SI Missense_Mutation p.H719L 0.06 tolerated(0.09) benign(0.16) TCGA-44-A4SS-01 3 165548018 165548018 C A BCHE Missense_Mutation p.R268S 0.10 tolerated(0.09) benign(0.021) TCGA-44-A4SS-01 3 167248993 167248993 C T WDR49 Missense_Mutation p.G358R 0.10 tolerated(0.15) benign(0.033) TCGA-44-A4SS-01 3 195015484 195015484 G T ACAP2 Missense_Mutation p.P577T 0.08 tolerated(0.57) benign(0.001) TCGA-44-A4SS-01 3 197408055 197408055 A G KIAA0226 Missense_Mutation p.V792A 0.14 deleterious(0.02) possibly_damaging(0.777) TCGA-44-A4SS-01 3 197687287 197687287 G T LMLN Silent p.R65R 0.12 TCGA-44-A4SS-01 3 38348841 38348841 A T SLC22A14 Missense_Mutation p.T205S 0.06 tolerated(1) benign(0.002) TCGA-44-A4SS-01 3 38797308 38797308 G A SCN10A Missense_Mutation p.R478C 0.13 deleterious(0.02) benign(0.205) TCGA-44-A4SS-01 3 39307161 39307161 C T CX3CR1 Silent p.T312T 0.18 TCGA-44-A4SS-01 3 39307746 39307746 G A CX3CR1 Silent p.P117P 0.06 TCGA-44-A4SS-01 3 44803263 44803263 G T KIF15 5'UTR 0.11 TCGA-44-A4SS-01 3 47316772 47316772 C A KIF9 Intron 0.11 TCGA-44-A4SS-01 3 50677845 50677845 C G MAPKAPK3 Missense_Mutation p.Q90E 0.05 deleterious(0.03) benign(0.044) TCGA-44-A4SS-01 3 51978403 51978403 C T PARP3 Intron 0.13 TCGA-44-A4SS-01 3 52021460 52021460 G T ACY1 Silent p.V281V 0.08 TCGA-44-A4SS-01 3 52181101 52181101 C A POC1A Missense_Mutation p.D156Y 0.13 deleterious(0) probably_damaging(0.993) TCGA-44-A4SS-01 3 52257072 52257072 C A TLR9 Silent p.V574V 0.17 TCGA-44-A4SS-01 3 75471349 75471349 T C FAM86DP RNA 0.19 TCGA-44-A4SS-01 3 7620879 7620879 T C GRM7 Silent p.Y762Y 0.14 TCGA-44-A4SS-01 3 78766949 78766949 C A ROBO1 Nonsense_Mutation p.E248* 0.13 TCGA-44-A4SS-01 3 88040607 88040607 A T HTR1F Missense_Mutation p.K236N 0.06 tolerated(0.29) benign(0.014) TCGA-44-A4SS-01 3 89448526 89448526 G T EPHA3 Missense_Mutation p.S497I 0.14 tolerated(0.09) possibly_damaging(0.697) TCGA-44-A4SS-01 3 93733458 93733458 A G STX19 Missense_Mutation p.L219P 0.06 deleterious(0) probably_damaging(0.989) TCGA-44-A4SS-01 3 9791855 9791855 C T OGG1 5'UTR 0.23 TCGA-44-A4SS-01 3 98568333 98568333 C A DCBLD2 Missense_Mutation p.L181F 0.05 tolerated(0.08) benign(0.35) TCGA-44-A4SS-01 4 114199072 114199072 C T ANK2 Missense_Mutation p.A588V 0.13 possibly_damaging(0.562) TCGA-44-A4SS-01 4 126372632 126372632 C A FAT4 Silent p.T3487T 0.07 TCGA-44-A4SS-01 4 140811464 140811464 C A MAML3 Missense_Mutation p.A376S 0.07 benign(0.05) TCGA-44-A4SS-01 4 140811465 140811465 C A MAML3 Missense_Mutation p.Q375H 0.06 probably_damaging(0.997) TCGA-44-A4SS-01 4 151770091 151770091 A T LRBA Missense_Mutation p.F1406L 0.08 tolerated(0.13) probably_damaging(0.977) TCGA-44-A4SS-01 4 155156193 155156193 G T DCHS2 Missense_Mutation p.S2749Y 0.14 tolerated(1) benign(0.001) TCGA-44-A4SS-01 4 159092390 159092390 G C FAM198B Missense_Mutation p.I46M 0.13 tolerated(0.1) possibly_damaging(0.506) TCGA-44-A4SS-01 4 160274785 160274785 G C RAPGEF2 Missense_Mutation p.C1252S 0.08 deleterious_low_confidence(0) possibly_damaging(0.611) TCGA-44-A4SS-01 4 165961387 165961387 G T TRIM60 Missense_Mutation p.V55F 0.11 tolerated(0.25) benign(0.037) TCGA-44-A4SS-01 4 175688112 175688112 A G GLRA3 Splice_Site p.X89_splice 0.07 TCGA-44-A4SS-01 4 176594895 176594895 C A GPM6A Missense_Mutation p.G108V 0.07 deleterious(0.02) probably_damaging(1) TCGA-44-A4SS-01 4 20597334 20597334 C A SLIT2 Missense_Mutation p.P1066Q 0.11 deleterious(0.02) probably_damaging(1) TCGA-44-A4SS-01 4 20618587 20618587 G T SLIT2 Missense_Mutation p.G1301V 0.11 tolerated(0.33) probably_damaging(0.932) TCGA-44-A4SS-01 4 2934858 2934858 C T MFSD10 Missense_Mutation p.R116K 0.08 deleterious(0) probably_damaging(0.996) TCGA-44-A4SS-01 4 37903639 37903639 G T TBC1D1 5'UTR 0.11 TCGA-44-A4SS-01 4 38690331 38690331 A T KLF3 Silent p.P61P 0.11 TCGA-44-A4SS-01 4 39077641 39077641 C G KLHL5 Nonsense_Mutation p.S193* 0.04 TCGA-44-A4SS-01 4 39304215 39304215 C T RFC1 Missense_Mutation p.G782S 0.14 tolerated(0.09) benign(0.088) TCGA-44-A4SS-01 4 54876225 54876225 C A CHIC2 3'UTR 0.14 TCGA-44-A4SS-01 4 55968070 55968070 T C KDR Missense_Mutation p.I754V 0.05 tolerated(1) benign(0.001) TCGA-44-A4SS-01 4 66467710 66467710 C G EPHA5 Missense_Mutation p.D187H 0.08 deleterious(0) probably_damaging(0.999) TCGA-44-A4SS-01 4 71508511 71508511 C T ENAM Silent p.S456S 0.07 TCGA-44-A4SS-01 4 7436099 7436099 G A PSAPL1 Missense_Mutation p.P170S 0.30 deleterious(0.01) benign(0.006) TCGA-44-A4SS-01 4 78087113 78087113 G A CCNG2 3'UTR 0.12 TCGA-44-A4SS-01 4 94690559 94690559 G T GRID2 Silent p.T853T 0.14 TCGA-44-A4SS-01 4 96761553 96761553 C A PDHA2 Missense_Mutation p.F84L 0.09 tolerated(0.65) benign(0.068) TCGA-44-A4SS-01 5 109124652 109124652 T C MAN2A1 Missense_Mutation p.M593T 0.06 tolerated(0.41) benign(0.003) TCGA-44-A4SS-01 5 112178169 112178169 G T APC Missense_Mutation p.G2293V 0.14 benign(0.388) TCGA-44-A4SS-01 5 1264599 1264599 C G TERT Missense_Mutation p.Q921H 0.06 deleterious(0.02) benign(0.285) TCGA-44-A4SS-01 5 128351709 128351709 C A SLC27A6 Missense_Mutation p.S367R 0.14 deleterious(0) benign(0.201) TCGA-44-A4SS-01 5 132199939 132199939 T C GDF9 Missense_Mutation p.Y96C 0.22 tolerated(0.11) benign(0.021) TCGA-44-A4SS-01 5 140167713 140167713 C A PCDHA1 Missense_Mutation p.P613Q 0.15 tolerated_low_confidence(0.09) benign(0.069) TCGA-44-A4SS-01 5 140174890 140174890 T A PCDHA2 Missense_Mutation p.L114Q 0.21 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-44-A4SS-01 5 140181056 140181056 C T PCDHA3 Missense_Mutation p.R92C 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-A4SS-01 5 140222462 140222462 C A PCDHA8 Missense_Mutation p.A519E 0.34 deleterious_low_confidence(0) possibly_damaging(0.798) TCGA-44-A4SS-01 5 140595934 140595934 C G PCDHB13 Missense_Mutation p.Q747E 0.08 deleterious_low_confidence(0.02) benign(0.223) TCGA-44-A4SS-01 5 145640433 145640433 G T RBM27 Missense_Mutation p.S622I 0.12 deleterious(0) possibly_damaging(0.701) TCGA-44-A4SS-01 5 149441320 149441320 C G CSF1R Missense_Mutation p.E573D 0.16 tolerated(0.06) benign(0.084) TCGA-44-A4SS-01 5 1494859 1494859 G C LPCAT1 Missense_Mutation p.S150C 0.10 deleterious(0) probably_damaging(1) TCGA-44-A4SS-01 5 156934092 156934092 G T ADAM19 Missense_Mutation p.S321Y 0.11 deleterious(0) probably_damaging(0.985) TCGA-44-A4SS-01 5 19612606 19612606 C A CDH18 Nonsense_Mutation p.G250* 0.06 TCGA-44-A4SS-01 5 24509733 24509733 C A CDH10 Missense_Mutation p.G400C 0.12 deleterious(0) probably_damaging(0.999) TCGA-44-A4SS-01 5 24593369 24593370 - T CDH10 Frame_Shift_Ins p.L78Afs*7 0.09 TCGA-44-A4SS-01 5 33576343 33576343 G T ADAMTS12 Missense_Mutation p.T1263K 0.17 tolerated(0.89) benign(0.039) TCGA-44-A4SS-01 5 33947387 33947387 G A SLC45A2 Missense_Mutation p.L417F 0.14 deleterious(0) probably_damaging(0.998) TCGA-44-A4SS-01 5 35740237 35740237 T G SPEF2 Missense_Mutation p.S1066R 0.07 tolerated(0.29) benign(0.168) TCGA-44-A4SS-01 5 36049053 36049053 G A UGT3A2 Silent p.L261L 0.12 TCGA-44-A4SS-01 5 37305173 37305173 C A NUP155 Nonsense_Mutation p.E1015* 0.08 TCGA-44-A4SS-01 5 39383274 39383274 A T DAB2 Missense_Mutation p.C263S 0.11 tolerated(0.3) benign(0.005) TCGA-44-A4SS-01 5 44809472 44809472 G C MRPS30 Silent p.A136A 0.17 TCGA-44-A4SS-01 5 458016 458016 C G EXOC3 Nonsense_Mutation p.S389* 0.17 TCGA-44-A4SS-01 5 76028663 76028663 G T F2R Missense_Mutation p.V205L 0.19 deleterious(0.04) benign(0.311) TCGA-44-A4SS-01 5 76932725 76932725 A T OTP Missense_Mutation p.F123Y 0.19 deleterious(0) probably_damaging(0.997) TCGA-44-A4SS-01 5 7712986 7712986 G C ADCY2 Missense_Mutation p.Q532H 0.10 tolerated(0.1) benign(0.063) TCGA-44-A4SS-01 5 86670002 86670002 T A RASA1 Missense_Mutation p.I600N 0.16 deleterious(0) possibly_damaging(0.602) TCGA-44-A4SS-01 5 94784045 94784045 C G FAM81B Missense_Mutation p.Q368E 0.21 tolerated(0.21) benign(0.019) TCGA-44-A4SS-01 6 116967063 116967063 T A ZUFSP Missense_Mutation p.K501N 0.25 deleterious(0) benign(0.018) TCGA-44-A4SS-01 6 117130723 117130723 G C GPRC6A Missense_Mutation p.I84M 0.30 tolerated(0.09) possibly_damaging(0.895) TCGA-44-A4SS-01 6 129901237 129901238 - A ARHGAP18 Frame_Shift_Ins p.L626Ffs*3 0.17 TCGA-44-A4SS-01 6 130374009 130374009 A G L3MBTL3 Missense_Mutation p.Q152R 0.22 tolerated(0.53) benign(0.001) TCGA-44-A4SS-01 6 133091439 133091439 T C SLC18B1 Silent p.E447E 0.08 TCGA-44-A4SS-01 6 1390753 1390753 C T FOXF2 Missense_Mutation p.R191C 0.22 deleterious(0) probably_damaging(0.999) TCGA-44-A4SS-01 6 147124516 147124516 G - ADGB Intron 0.16 TCGA-44-A4SS-01 6 151939253 151939253 C A CCDC170 Missense_Mutation p.P707T 0.15 tolerated(0.81) benign(0.023) TCGA-44-A4SS-01 6 152558015 152558015 G A SYNE1 Silent p.I6712I 0.34 TCGA-44-A4SS-01 6 155154150 155154150 A G SCAF8 Missense_Mutation p.H1146R 0.14 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-44-A4SS-01 6 167352485 167352485 C A RNASET2 Missense_Mutation p.W115L 0.15 deleterious(0) probably_damaging(0.999) TCGA-44-A4SS-01 6 26204924 26204924 C G HIST1H4E Missense_Mutation p.R18G 0.23 deleterious(0.01) unknown(0) TCGA-44-A4SS-01 6 28541447 28541447 G T SCAND3 Nonsense_Mutation p.S740* 0.21 TCGA-44-A4SS-01 6 30711923 30711923 G A IER3 Silent p.L87L 0.08 TCGA-44-A4SS-01 6 31778377 31778377 A T HSPA1L Missense_Mutation p.L458Q 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-44-A4SS-01 6 31962307 31962307 G A C4A Silent p.L875L 0.30 TCGA-44-A4SS-01 6 33543631 33543631 C A BAK1 Missense_Mutation p.A49S 0.27 tolerated(0.52) benign(0.005) TCGA-44-A4SS-01 6 34741303 34741303 A T SNRPC Missense_Mutation p.M146L 0.08 tolerated_low_confidence(0.09) unknown(0) TCGA-44-A4SS-01 6 43214425 43214425 G A TTBK1 Silent p.K9K 0.24 TCGA-44-A4SS-01 6 46605711 46605711 G T CYP39A1 Missense_Mutation p.L165I 0.12 tolerated(0.44) benign(0.062) TCGA-44-A4SS-01 6 51923123 51923123 G C PKHD1 Missense_Mutation p.Q504E 0.22 deleterious(0) possibly_damaging(0.694) TCGA-44-A4SS-01 6 56047342 56047342 C A COL21A1 Silent p.G25G 0.22 TCGA-44-A4SS-01 6 57006773 57006773 C G ZNF451 Missense_Mutation p.S295C 0.10 deleterious(0) possibly_damaging(0.695) TCGA-44-A4SS-01 6 64394906 64394906 C G PHF3 Missense_Mutation p.T428S 0.16 tolerated_low_confidence(1) benign(0.001) TCGA-44-A4SS-01 6 64404627 64404627 T A PHF3 Missense_Mutation p.C885S 0.25 tolerated(0.1) benign(0.024) TCGA-44-A4SS-01 6 74475671 74475671 G C CD109 Missense_Mutation p.D376H 0.07 deleterious(0) probably_damaging(0.996) TCGA-44-A4SS-01 6 86349987 86349987 C G SYNCRIP Silent p.G109G 0.06 TCGA-44-A4SS-01 6 90459321 90459321 G A MDN1 Missense_Mutation p.H1186Y 0.26 probably_damaging(0.976) TCGA-44-A4SS-01 6 96034808 96034808 G T MANEA Missense_Mutation p.D165Y 0.23 deleterious(0) probably_damaging(1) TCGA-44-A4SS-01 7 104748284 104748284 A G KMT2E Missense_Mutation p.D1127G 0.09 deleterious_low_confidence(0.05) possibly_damaging(0.539) TCGA-44-A4SS-01 7 115889218 115889218 G T TES Missense_Mutation p.M86I 0.13 tolerated(0.9) benign(0.013) TCGA-44-A4SS-01 7 120969705 120969705 C A WNT16 Nonsense_Mutation p.C60* 0.17 TCGA-44-A4SS-01 7 124404651 124404651 C A GPR37 Missense_Mutation p.G127V 0.17 tolerated_low_confidence(0.11) benign(0.003) TCGA-44-A4SS-01 7 127014885 127014885 G C ZNF800 Missense_Mutation p.Q169E 0.08 tolerated(1) benign(0) TCGA-44-A4SS-01 7 131853231 131853231 T A PLXNA4 Missense_Mutation p.E1373V 0.12 deleterious(0) probably_damaging(0.999) TCGA-44-A4SS-01 7 141536910 141536910 A T PRSS37 Splice_Site p.X189_splice 0.10 TCGA-44-A4SS-01 7 142639553 142639553 G T KEL Missense_Mutation p.P669T 0.29 tolerated(0.14) possibly_damaging(0.597) TCGA-44-A4SS-01 7 143048935 143048935 G T CLCN1 Missense_Mutation p.E948D 0.15 tolerated_low_confidence(0.87) benign(0.002) TCGA-44-A4SS-01 7 143771665 143771665 C A OR2A25 Missense_Mutation p.S118Y 0.15 deleterious(0) probably_damaging(0.966) TCGA-44-A4SS-01 7 148703051 148703051 T C PDIA4 Missense_Mutation p.Y409C 0.14 deleterious(0) probably_damaging(0.999) TCGA-44-A4SS-01 7 150325553 150325553 G C GIMAP6 Missense_Mutation p.L45V 0.08 deleterious(0) probably_damaging(1) TCGA-44-A4SS-01 7 150742328 150742328 C G ABCB8 Silent p.G683G 0.08 TCGA-44-A4SS-01 7 150934943 150934943 G A CHPF2 Missense_Mutation p.E499K 0.17 tolerated(0.08) benign(0.326) TCGA-44-A4SS-01 7 15652098 15652098 C A MEOX2 Missense_Mutation p.A277S 0.12 tolerated_low_confidence(0.09) benign(0.001) TCGA-44-A4SS-01 7 15666404 15666404 C G MEOX2 Missense_Mutation p.E219D 0.14 deleterious(0.01) probably_damaging(0.989) TCGA-44-A4SS-01 7 19184717 19184717 C A FERD3L Missense_Mutation p.G90V 0.11 tolerated(0.07) benign(0.094) TCGA-44-A4SS-01 7 20199487 20199487 T C MACC1 Missense_Mutation p.H166R 0.17 tolerated(0.07) benign(0.034) TCGA-44-A4SS-01 7 27239055 27239055 G T HOXA13 Silent p.A214A 0.18 TCGA-44-A4SS-01 7 33014337 33014337 G C FKBP9 Missense_Mutation p.K110N 0.14 tolerated(0.08) benign(0.36) TCGA-44-A4SS-01 7 34917756 34917756 G A NPSR1 Missense_Mutation p.G365D 0.18 deleterious_low_confidence(0) benign(0.118) TCGA-44-A4SS-01 7 47408399 47408399 C A TNS3 Missense_Mutation p.C615F 0.10 tolerated(0.81) benign(0) TCGA-44-A4SS-01 7 51111375 51111375 C A COBL Missense_Mutation p.G371W 0.22 deleterious(0.01) benign(0.188) TCGA-44-A4SS-01 7 57188034 57188034 C T ZNF479 Missense_Mutation p.S363N 0.19 tolerated(1) benign(0.005) TCGA-44-A4SS-01 7 57188044 57188044 G T ZNF479 Missense_Mutation p.Q360K 0.24 tolerated(1) benign(0.001) TCGA-44-A4SS-01 7 72658395 72658395 T A GTF2IRD2P1 RNA 0.16 TCGA-44-A4SS-01 7 73008232 73008232 C G MLXIPL Missense_Mutation p.R841P 0.12 deleterious(0.03) probably_damaging(0.935) TCGA-44-A4SS-01 7 76984582 76984582 G A GSAP Missense_Mutation p.A429V 0.09 tolerated(0.27) benign(0.002) TCGA-44-A4SS-01 7 82583166 82583166 C - PCLO Frame_Shift_Del p.G2368Vfs*76 0.14 TCGA-44-A4SS-01 7 87144691 87144691 G T ABCB1 Silent p.T1046T 0.11 TCGA-44-A4SS-01 7 87737565 87737565 C T ADAM22 Silent p.H155H 0.15 TCGA-44-A4SS-01 7 888078 888078 A G SUN1 Intron 0.17 TCGA-44-A4SS-01 7 88962752 88962752 C A ZNF804B Silent p.P152P 0.14 TCGA-44-A4SS-01 7 88965825 88965825 C A ZNF804B Missense_Mutation p.H1177N 0.17 deleterious(0) probably_damaging(0.952) TCGA-44-A4SS-01 7 92763046 92763046 C A SAMD9L Missense_Mutation p.G747C 0.12 deleterious(0) probably_damaging(1) TCGA-44-A4SS-01 7 94037547 94037547 C T COL1A2 Missense_Mutation p.A231V 0.15 unknown(0) TCGA-44-A4SS-01 7 94057622 94057622 C A COL1A2 Missense_Mutation p.P1182T 0.11 unknown(0) TCGA-44-A4SS-01 7 99697245 99697245 T A MCM7 Silent p.V81V 0.15 TCGA-44-A4SS-01 8 10466108 10466108 C T RP1L1 Missense_Mutation p.G1834S 0.15 unknown(0) TCGA-44-A4SS-01 8 10466744 10466744 G A RP1L1 Missense_Mutation p.R1622W 0.09 unknown(0) TCGA-44-A4SS-01 8 105361677 105361677 C T DCSTAMP Silent p.P299P 0.07 TCGA-44-A4SS-01 8 106814031 106814031 G A ZFPM2 Missense_Mutation p.R574Q 0.06 deleterious(0) probably_damaging(0.996) TCGA-44-A4SS-01 8 110477324 110477324 G A PKHD1L1 Missense_Mutation p.G2755R 0.16 tolerated(0.19) benign(0.391) TCGA-44-A4SS-01 8 122626810 122626810 G T HAS2 Silent p.R400R 0.14 TCGA-44-A4SS-01 8 130863099 130863099 C G FAM49B Missense_Mutation p.R232T 0.11 deleterious(0.05) possibly_damaging(0.678) TCGA-44-A4SS-01 8 131964215 131964215 C A ADCY8 Silent p.R380R 0.08 TCGA-44-A4SS-01 8 139165277 139165277 C A FAM135B Nonsense_Mutation p.E481* 0.12 TCGA-44-A4SS-01 8 139606339 139606339 G T COL22A1 Silent p.G1512G 0.13 TCGA-44-A4SS-01 8 139809090 139809090 G T COL22A1 Missense_Mutation p.P523H 0.06 unknown(0) TCGA-44-A4SS-01 8 144130653 144130653 T G C8orf31 Missense_Mutation p.L128R 0.10 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-44-A4SS-01 8 144680972 144680972 C T TIGD5 Missense_Mutation p.P300L 0.11 deleterious(0) probably_damaging(0.999) TCGA-44-A4SS-01 8 144994145 144994145 C G PLEC Missense_Mutation p.E3419Q 0.06 probably_damaging(0.999) TCGA-44-A4SS-01 8 1719242 1719242 G C CLN8 Missense_Mutation p.G8R 0.07 tolerated(0.53) benign(0.005) TCGA-44-A4SS-01 8 2021570 2021570 G C MYOM2 Silent p.L370L 0.25 TCGA-44-A4SS-01 8 33406305 33406305 T C RNF122 Missense_Mutation p.Q145R 0.17 tolerated(0.33) benign(0.011) TCGA-44-A4SS-01 8 36768520 36768520 C A KCNU1 Missense_Mutation p.P802T 0.21 tolerated(0.22) benign(0.01) TCGA-44-A4SS-01 8 38272294 38272294 C A FGFR1 Intron 0.19 TCGA-44-A4SS-01 8 39644501 39644501 C A ADAM2 Missense_Mutation p.V295F 0.11 deleterious(0) probably_damaging(0.973) TCGA-44-A4SS-01 8 41468329 41468329 G T AGPAT6 Missense_Mutation p.R204M 0.18 deleterious(0.04) possibly_damaging(0.79) TCGA-44-A4SS-01 8 54891616 54891616 T A TCEA1 Missense_Mutation p.K265I 0.06 deleterious(0) probably_damaging(0.991) TCGA-44-A4SS-01 8 61533398 61533398 C G RAB2A 3'UTR 0.12 TCGA-44-A4SS-01 8 70488292 70488292 G T SULF1 Missense_Mutation p.C87F 0.13 deleterious(0) probably_damaging(0.967) TCGA-44-A4SS-01 8 70981407 70981407 G T PRDM14 Missense_Mutation p.P230Q 0.12 tolerated(0.5) benign(0) TCGA-44-A4SS-01 8 70981408 70981408 G T PRDM14 Missense_Mutation p.P230T 0.12 tolerated(1) benign(0) TCGA-44-A4SS-01 8 72958838 72958838 C A TRPA1 Missense_Mutation p.E657D 0.16 deleterious(0.01) possibly_damaging(0.459) TCGA-44-A4SS-01 8 87424073 87424073 G A WWP1 Missense_Mutation p.G344E 0.20 tolerated(0.7) benign(0.046) TCGA-44-A4SS-01 8 97797154 97797154 G T CPQ Missense_Mutation p.G10V 0.12 tolerated_low_confidence(0.29) benign(0.003) TCGA-44-A4SS-01 9 104187792 104187792 G T ALDOB Missense_Mutation p.Q248K 0.12 tolerated(0.06) benign(0.056) TCGA-44-A4SS-01 9 128201249 128201249 C A MAPKAP1 Missense_Mutation p.D496Y 0.14 deleterious(0) possibly_damaging(0.806) TCGA-44-A4SS-01 9 135163991 135163991 T C SETX Missense_Mutation p.I2052V 0.14 deleterious(0) probably_damaging(0.979) TCGA-44-A4SS-01 9 138012049 138012049 C T OLFM1 3'UTR 0.08 TCGA-44-A4SS-01 9 139261262 139261262 G C CARD9 Silent p.L449L 0.07 TCGA-44-A4SS-01 9 21217147 21217147 A T IFNA16 Missense_Mutation p.L53Q 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-44-A4SS-01 9 23701584 23701584 C A ELAVL2 Missense_Mutation p.G169V 0.13 deleterious(0) probably_damaging(0.98) TCGA-44-A4SS-01 9 35660488 35660488 G A CCDC107 Intron 0.20 TCGA-44-A4SS-01 9 35685460 35685460 C G TPM2 Missense_Mutation p.A155P 0.14 deleterious(0) probably_damaging(1) TCGA-44-A4SS-01 9 439300 439300 C G DOCK8 Missense_Mutation p.P1712R 0.13 deleterious(0.04) probably_damaging(0.999) TCGA-44-A4SS-01 9 5922650 5922650 C T KIAA2026 Missense_Mutation p.E1116K 0.06 deleterious(0.02) benign(0.35) TCGA-44-A4SS-01 9 74838075 74838075 C T GDA Missense_Mutation p.L216F 0.14 tolerated(0.12) possibly_damaging(0.864) TCGA-44-A4SS-01 9 77376684 77376684 G T TRPM6 Silent p.V1571V 0.08 TCGA-44-A4SS-01 9 78686810 78686810 G C PCSK5 Missense_Mutation p.R297T 0.07 tolerated(0.06) probably_damaging(0.968) TCGA-44-A4SS-01 9 8500944 8500944 G A PTPRD Silent p.S646S 0.13 TCGA-44-A4SS-01 9 94486794 94486794 G T ROR2 Missense_Mutation p.P661Q 0.12 deleterious(0) probably_damaging(1) TCGA-44-A4SS-01 X 100075409 100075409 G A CSTF2 Missense_Mutation p.A2T 0.24 tolerated_low_confidence(0.23) probably_damaging(0.956) TCGA-44-A4SS-01 X 118723608 118723608 C G NKRF Missense_Mutation p.D609H 0.25 tolerated(0.05) probably_damaging(0.973) TCGA-44-A4SS-01 X 132887564 132887564 G T GPC3 Missense_Mutation p.T326K 0.28 deleterious(0.01) benign(0.002) TCGA-44-A4SS-01 X 133700756 133700756 G T PLAC1 5'UTR 0.30 TCGA-44-A4SS-01 X 140996384 140996384 C A MAGEC1 Missense_Mutation p.P1065H 0.33 deleterious(0) unknown(0) TCGA-44-A4SS-01 X 142716741 142716741 C T SLITRK4 Silent p.E728E 0.10 TCGA-44-A4SS-01 X 150780189 150780189 G C PASD1 Silent p.V57V 0.22 TCGA-44-A4SS-01 X 155231146 155231146 C G IL9R Intron 0.07 TCGA-44-A4SS-01 X 1713004 1713004 G C AKAP17A Missense_Mutation p.A217P 0.11 deleterious(0) probably_damaging(0.992) TCGA-44-A4SS-01 X 17820135 17820135 C G RAI2 5'UTR 0.16 TCGA-44-A4SS-01 X 32404497 32404497 G A DMD Missense_Mutation p.T1535M 0.18 probably_damaging(0.978) TCGA-44-A4SS-01 X 3241187 3241187 G T MXRA5 Missense_Mutation p.L847I 0.23 tolerated(0.5) benign(0.01) TCGA-44-A4SS-01 X 49088147 49088147 C T CACNA1F Missense_Mutation p.E90K 0.26 deleterious(0) probably_damaging(0.992) TCGA-44-A4SS-01 X 51488283 51488283 A G GSPT2 Missense_Mutation p.T521A 0.25 tolerated(0.46) benign(0.038) TCGA-44-A4SS-01 X 54569698 54569698 G C GNL3L Missense_Mutation p.C150S 0.19 tolerated(0.22) probably_damaging(0.989) TCGA-44-A4SS-01 X 63410734 63410734 G T AMER1 Silent p.I811I 0.31 TCGA-44-A4SS-01 X 73066879 73066879 G A XIST RNA 0.26 TCGA-44-A4SS-01 X 76920161 76920161 G T ATRX Missense_Mutation p.Q1306K 0.12 benign(0.002) TCGA-44-A4SS-01 X 78011498 78011498 G T LPAR4 3'UTR 0.29 TCGA-44-A4SS-01 X 78216960 78216960 C A P2RY10 Missense_Mutation p.Q315K 0.28 tolerated(0.17) benign(0.017) TCGA-44-A4SS-01 X 83129165 83129165 T A CYLC1 Silent p.S483S 0.23 TCGA-44-A4SS-01 X 83129330 83129330 C A CYLC1 Silent p.I538I 0.30 TCGA-44-A4SS-01 X 85211223 85211223 C - CHM Frame_Shift_Del p.Y368Mfs*41 0.13 TCGA-44-A4SS-01 X 86067970 86067970 G T DACH2 Missense_Mutation p.S451I 0.20 deleterious(0) benign(0.372) TCGA-44-A4SS-01 X 86068165 86068165 C G DACH2 Silent p.R474R 0.50 TCGA-44-A4SS-01 X 88009007 88009007 A G CPXCR1 Missense_Mutation p.R198G 0.15 deleterious(0) possibly_damaging(0.765) TCGA-44-A4SS-01 X 88009017 88009017 G T CPXCR1 Missense_Mutation p.R201M 0.23 deleterious(0) probably_damaging(0.919) TCGA-44-A4SS-01 Y 6955407 6955407 C T TBL1Y Silent p.F460F 0.12 TCGA-44-A4SU-01 10 118314708 118314708 C A PNLIP Missense_Mutation p.P197H 0.09 deleterious(0) probably_damaging(0.999) TCGA-44-A4SU-01 10 95415537 95415537 C A PDE6C Missense_Mutation p.N652K 0.06 deleterious(0.04) possibly_damaging(0.672) TCGA-44-A4SU-01 10 95415542 95415542 A T PDE6C Missense_Mutation p.N654I 0.07 deleterious(0) possibly_damaging(0.812) TCGA-44-A4SU-01 11 113264461 113264461 G T ANKK1 Silent p.P148P 0.21 TCGA-44-A4SU-01 11 120702704 120702704 G C GRIK4 Missense_Mutation p.A219P 0.29 deleterious(0.01) possibly_damaging(0.897) TCGA-44-A4SU-01 11 134022867 134022867 C G NCAPD3 Missense_Mutation p.R1490P 0.29 deleterious(0) probably_damaging(0.933) TCGA-44-A4SU-01 11 26700330 26700330 G C SLC5A12 Missense_Mutation p.S503C 0.15 deleterious(0) probably_damaging(0.999) TCGA-44-A4SU-01 11 55761815 55761815 C A OR5F1 Missense_Mutation p.G96V 0.18 deleterious(0) probably_damaging(0.97) TCGA-44-A4SU-01 11 55761816 55761816 C G OR5F1 Missense_Mutation p.G96R 0.18 deleterious(0) probably_damaging(0.992) TCGA-44-A4SU-01 11 5730535 5730535 G T TRIM22 Missense_Mutation p.G385V 0.24 tolerated(0.25) benign(0.426) TCGA-44-A4SU-01 11 58207201 58207201 G C OR5B12 Missense_Mutation p.L142V 0.09 deleterious_low_confidence(0) possibly_damaging(0.79) TCGA-44-A4SU-01 11 60184425 60184425 C A MS4A14 Missense_Mutation p.Q695K 0.25 tolerated(0.2) benign(0.001) TCGA-44-A4SU-01 11 72299887 72299887 G A PDE2A Silent p.S337S 0.28 TCGA-44-A4SU-01 11 7982676 7982676 C T NLRP10 Silent p.K161K 0.15 TCGA-44-A4SU-01 11 8704243 8704275 GGAGGCCCCGCCCGAAGCCCGGCCTCTGTGACC - RPL27A 5'UTR 0.22 TCGA-44-A4SU-01 12 109617030 109617030 G T ACACB Silent p.R525R 0.50 TCGA-44-A4SU-01 12 2224542 2224542 G A CACNA1C Missense_Mutation p.A68T 0.24 tolerated(0.21) benign(0.007) TCGA-44-A4SU-01 12 40013043 40013043 A T ABCD2 Silent p.A125A 0.28 TCGA-44-A4SU-01 12 4874695 4874695 T C GALNT8 Missense_Mutation p.Y582H 0.15 tolerated(0.48) benign(0.039) TCGA-44-A4SU-01 12 56030837 56030837 C T OR10P1 Silent p.A54A 0.23 TCGA-44-A4SU-01 12 58139586 58139586 C A TSPAN31 Missense_Mutation p.S41Y 0.13 deleterious(0) probably_damaging(0.983) TCGA-44-A4SU-01 13 110861200 110861200 T C COL4A1 Missense_Mutation p.D230G 0.21 unknown(0) TCGA-44-A4SU-01 13 52439625 52439625 C - CCDC70 Frame_Shift_Del p.Q38Rfs*4 0.32 TCGA-44-A4SU-01 14 105418085 105418085 G A AHNAK2 Missense_Mutation p.H1235Y 0.09 benign(0.094) TCGA-44-A4SU-01 14 24801051 24801051 C T ADCY4 Silent p.R204R 0.09 TCGA-44-A4SU-01 14 42356616 42356616 G T LRFN5 Missense_Mutation p.C263F 0.14 deleterious(0) probably_damaging(0.997) TCGA-44-A4SU-01 14 53101741 53101741 G A GPR137C Missense_Mutation p.G400R 0.13 deleterious(0) probably_damaging(0.998) TCGA-44-A4SU-01 14 56147420 56147420 C T KTN1 Intron 0.11 TCGA-44-A4SU-01 14 81743481 81743481 C G STON2 Missense_Mutation p.C725S 0.15 deleterious(0) probably_damaging(0.999) TCGA-44-A4SU-01 14 95934167 95934167 C T SYNE3 Nonsense_Mutation p.W94* 0.19 TCGA-44-A4SU-01 15 31320629 31320629 A T TRPM1 Missense_Mutation p.C1084S 0.08 deleterious(0) probably_damaging(0.994) TCGA-44-A4SU-01 15 41823327 41823327 C T RPAP1 Silent p.E279E 0.04 TCGA-44-A4SU-01 15 42059461 42059461 A C MGA Missense_Mutation p.S3061R 0.26 deleterious_low_confidence(0.02) benign(0.005) TCGA-44-A4SU-01 15 53889376 53889376 C A WDR72 Missense_Mutation p.M1016I 0.05 tolerated(0.58) benign(0.001) TCGA-44-A4SU-01 15 63092865 63092865 A G TLN2 Missense_Mutation p.N2125S 0.07 tolerated(0.08) benign(0.351) TCGA-44-A4SU-01 15 78212426 78212426 G A RP11-114H24.7 Intron 0.05 TCGA-44-A4SU-01 15 78825984 78825984 A T HYKK Missense_Mutation p.K365I 0.09 tolerated(0.07) benign(0.163) TCGA-44-A4SU-01 15 82444680 82444680 G A EFTUD1 Silent p.V705V 0.04 TCGA-44-A4SU-01 16 27078644 27078644 C T C16orf82 RNA 0.18 TCGA-44-A4SU-01 16 53403557 53403557 T A RP11-44F14.1 RNA 0.31 TCGA-44-A4SU-01 16 56623933 56623933 C T MT3 Intron 0.33 TCGA-44-A4SU-01 17 10362681 10362681 A G MYH4 Missense_Mutation p.F492L 0.23 deleterious(0.01) benign(0.031) TCGA-44-A4SU-01 17 25783814 25783814 G A KSR1 Missense_Mutation p.D49N 0.20 deleterious(0.02) benign(0.076) TCGA-44-A4SU-01 17 25783840 25783840 G A KSR1 Silent p.G57G 0.24 TCGA-44-A4SU-01 17 25783879 25783879 G A KSR1 Silent p.Q70Q 0.28 TCGA-44-A4SU-01 17 3195470 3195470 C G OR3A1 Missense_Mutation p.S136T 0.10 tolerated(0.24) benign(0.082) TCGA-44-A4SU-01 17 66972083 66972083 C A ABCA9 Missense_Mutation p.W1616C 0.26 deleterious(0) probably_damaging(0.986) TCGA-44-A4SU-01 17 6927527 6927527 G T BCL6B Missense_Mutation p.R102L 0.30 tolerated(0.26) benign(0.015) TCGA-44-A4SU-01 17 7579528 7579528 C T TP53 Nonsense_Mutation p.W53* 0.50 TCGA-44-A4SU-01 18 65180925 65180925 C A DSEL Missense_Mutation p.W317C 0.36 deleterious(0) probably_damaging(1) TCGA-44-A4SU-01 18 9886681 9886681 G T TXNDC2 Missense_Mutation p.V69F 0.09 deleterious(0.01) probably_damaging(0.949) TCGA-44-A4SU-01 19 12243364 12243364 C A ZNF20 3'UTR 0.28 TCGA-44-A4SU-01 19 13226207 13226207 C A TRMT1 Missense_Mutation p.G176V 0.33 deleterious(0) possibly_damaging(0.574) TCGA-44-A4SU-01 19 14754920 14754920 C A EMR3 Missense_Mutation p.Q350H 0.18 deleterious(0.02) probably_damaging(0.943) TCGA-44-A4SU-01 19 36303058 36303058 G A PRODH2 Missense_Mutation p.A239V 0.25 deleterious(0.02) possibly_damaging(0.887) TCGA-44-A4SU-01 19 51559891 51559891 G A KLK13 Nonsense_Mutation p.R263* 0.10 TCGA-44-A4SU-01 19 53762416 53762416 C A VN1R2 Missense_Mutation p.A263E 0.08 deleterious(0.01) probably_damaging(0.986) TCGA-44-A4SU-01 19 58371380 58371380 A C ZNF587 Missense_Mutation p.S534R 0.07 tolerated(0.54) probably_damaging(0.928) TCGA-44-A4SU-01 19 9056820 9056820 G T MUC16 Missense_Mutation p.T10209K 0.22 benign(0.007) TCGA-44-A4SU-01 19 9296961 9296961 C T OR7D2 Silent p.F168F 0.27 TCGA-44-A4SU-01 1 150484990 150484990 C A ECM1 Silent p.R443R 0.05 TCGA-44-A4SU-01 1 152285503 152285503 C A FLG Missense_Mutation p.S620I 0.18 probably_damaging(0.999) TCGA-44-A4SU-01 1 158549588 158549588 A G OR10X1 Silent p.S34S 0.19 TCGA-44-A4SU-01 1 158606533 158606533 C A SPTA1 Silent p.V1736V 0.16 TCGA-44-A4SU-01 1 161647510 161647510 C A FCGR2B 3'UTR 0.31 TCGA-44-A4SU-01 1 169510785 169510785 G T F5 Silent p.V1181V 0.04 TCGA-44-A4SU-01 1 175067548 175067548 G A TNN Missense_Mutation p.A646T 0.18 tolerated(0.57) benign(0.003) TCGA-44-A4SU-01 1 175092673 175092673 C T TNN Missense_Mutation p.P930S 0.17 tolerated(0.27) benign(0.159) TCGA-44-A4SU-01 1 17596794 17596794 C T PADI3 Missense_Mutation p.P240L 0.10 deleterious(0.04) benign(0.063) TCGA-44-A4SU-01 1 179460858 179460858 C A AXDND1 Silent p.S759S 0.13 TCGA-44-A4SU-01 1 184801055 184801055 C T FAM129A Missense_Mutation p.E215K 0.31 tolerated(0.35) possibly_damaging(0.551) TCGA-44-A4SU-01 1 197065221 197065221 T C ASPM Missense_Mutation p.Y2965C 0.22 deleterious(0.03) probably_damaging(0.992) TCGA-44-A4SU-01 1 202245515 202245515 C T LGR6 Silent p.D170D 0.06 TCGA-44-A4SU-01 1 205817025 205817025 A G PM20D1 Missense_Mutation p.Y82H 0.14 tolerated(0.17) benign(0.029) TCGA-44-A4SU-01 1 215960126 215960126 A T USH2A Missense_Mutation p.C3425S 0.15 possibly_damaging(0.878) TCGA-44-A4SU-01 1 228432121 228432121 T C OBSCN Silent p.D1202D 0.25 TCGA-44-A4SU-01 1 230846288 230846288 G A AGT Silent p.A103A 0.20 TCGA-44-A4SU-01 1 231342396 231342396 A G TRIM67 Splice_Site p.X561_splice 0.12 TCGA-44-A4SU-01 1 237948020 237948020 C T RYR2 Silent p.D4336D 0.19 TCGA-44-A4SU-01 1 247921560 247921560 C A OR1C1 Missense_Mutation p.G50V 0.24 tolerated(0.35) benign(0.272) TCGA-44-A4SU-01 1 41298754 41298754 C A KCNQ4 Missense_Mutation p.P528T 0.16 deleterious(0.03) probably_damaging(1) TCGA-44-A4SU-01 1 52704405 52704405 G T ZFYVE9 Missense_Mutation p.C439F 0.16 deleterious_low_confidence(0.04) benign(0.104) TCGA-44-A4SU-01 1 6304297 6304297 G A HES3 5'UTR 0.21 TCGA-44-A4SU-01 1 67786058 67786058 C A IL12RB2 Missense_Mutation p.H3N 0.10 tolerated(0.14) benign(0.002) TCGA-44-A4SU-01 1 75038561 75038561 T A C1orf173 Missense_Mutation p.S945C 0.15 tolerated(0.06) possibly_damaging(0.855) TCGA-44-A4SU-01 1 75622747 75622747 A G LHX8 Missense_Mutation p.H327R 0.05 deleterious(0) probably_damaging(0.966) TCGA-44-A4SU-01 1 78958969 78958969 G T PTGFR Missense_Mutation p.A181S 0.13 tolerated(0.86) benign(0.029) TCGA-44-A4SU-01 1 91403432 91403432 G A ZNF644 Missense_Mutation p.R1100C 0.15 deleterious(0.04) probably_damaging(0.998) TCGA-44-A4SU-01 20 10286809 10286809 C T SNAP25 Silent p.A195A 0.12 TCGA-44-A4SU-01 20 18794902 18794902 G T SCP2D1 Missense_Mutation p.R148M 0.10 tolerated(0.7) possibly_damaging(0.905) TCGA-44-A4SU-01 20 2293581 2293581 T A TGM3 Nonsense_Mutation p.L193* 0.21 TCGA-44-A4SU-01 20 30784560 30784560 G A PLAGL2 Missense_Mutation p.L396F 0.21 deleterious(0.01) benign(0.001) TCGA-44-A4SU-01 20 33763986 33763986 G T PROCR Missense_Mutation p.R113L 0.14 tolerated(0.57) benign(0.26) TCGA-44-A4SU-01 20 3652102 3652102 C T ADAM33 Silent p.E649E 0.07 TCGA-44-A4SU-01 20 3732755 3732755 C A HSPA12B Missense_Mutation p.A668D 0.11 deleterious(0) probably_damaging(0.998) TCGA-44-A4SU-01 20 40790012 40790012 C T PTPRT Missense_Mutation p.G888R 0.16 deleterious(0) probably_damaging(0.958) TCGA-44-A4SU-01 21 19725273 19725273 G C TMPRSS15 Missense_Mutation p.T373S 0.31 deleterious(0.05) benign(0.364) TCGA-44-A4SU-01 21 30927602 30927602 A C GRIK1 Missense_Mutation p.I793S 0.38 deleterious(0) probably_damaging(0.995) TCGA-44-A4SU-01 22 38219465 38219465 G A GALR3 Missense_Mutation p.V18M 0.24 deleterious(0.01) benign(0.001) TCGA-44-A4SU-01 22 40661954 40661954 A T TNRC6B Missense_Mutation p.T574S 0.18 tolerated(0.29) probably_damaging(0.989) TCGA-44-A4SU-01 2 152544855 152544855 T A NEB Missense_Mutation p.D789V 0.23 possibly_damaging(0.565) TCGA-44-A4SU-01 2 242054508 242054508 C A PASK Missense_Mutation p.D1095Y 0.07 deleterious(0) probably_damaging(1) TCGA-44-A4SU-01 2 37036016 37036016 G A VIT Silent p.L597L 0.18 TCGA-44-A4SU-01 2 89399610 89399610 G T IGKV1-16 Silent p.S31S 0.08 TCGA-44-A4SU-01 2 8946491 8946491 G A KIDINS220 Silent p.T171T 0.18 TCGA-44-A4SU-01 2 97031704 97031704 A G NCAPH Missense_Mutation p.K597E 0.04 tolerated(0.89) benign(0.008) TCGA-44-A4SU-01 2 97405753 97405753 C A LMAN2L Missense_Mutation p.G9W 0.17 deleterious_low_confidence(0) possibly_damaging(0.487) TCGA-44-A4SU-01 3 113505204 113505204 C T ATP6V1A Silent p.G230G 0.28 TCGA-44-A4SU-01 3 123987979 123987979 G T KALRN Missense_Mutation p.K280N 0.19 deleterious(0.04) possibly_damaging(0.535) TCGA-44-A4SU-01 3 12434118 12434118 C G PPARG Missense_Mutation p.F162L 0.19 deleterious(0) probably_damaging(0.998) TCGA-44-A4SU-01 3 124376341 124376341 G A KALRN Missense_Mutation p.R61Q 0.09 deleterious(0.05) benign(0.085) TCGA-44-A4SU-01 3 14942545 14942545 G T FGD5 Missense_Mutation p.A1081S 0.17 deleterious(0) benign(0.417) TCGA-44-A4SU-01 3 15282052 15282052 G A CAPN7 Missense_Mutation p.V494I 0.40 tolerated(0.28) benign(0.026) TCGA-44-A4SU-01 3 15282060 15282060 C A CAPN7 Missense_Mutation p.N496K 0.45 tolerated(0.05) possibly_damaging(0.493) TCGA-44-A4SU-01 3 38768493 38768493 G T SCN10A Missense_Mutation p.N897K 0.22 deleterious(0.01) possibly_damaging(0.715) TCGA-44-A4SU-01 3 49200931 49200931 C T CCDC71 Silent p.K237K 0.11 TCGA-44-A4SU-01 3 51418767 51418767 C G DOCK3 Nonsense_Mutation p.S1957* 0.20 TCGA-44-A4SU-01 3 97984091 97984091 C A OR5H6 Missense_Mutation p.F321L 0.06 tolerated(1) benign(0.001) TCGA-44-A4SU-01 4 159514595 159514595 C T RXFP1 Missense_Mutation p.A77V 0.15 tolerated(0.17) benign(0.001) TCGA-44-A4SU-01 4 184175085 184175085 G C WWC2 Missense_Mutation p.E377Q 0.16 deleterious(0.03) benign(0.04) TCGA-44-A4SU-01 4 20530614 20530614 C T SLIT2 Missense_Mutation p.A502V 0.16 tolerated(0.33) probably_damaging(0.995) TCGA-44-A4SU-01 4 26490874 26490874 C T CCKAR Silent p.K115K 0.22 TCGA-44-A4SU-01 4 5461837 5461837 C - STK32B Frame_Shift_Del p.K265Rfs*22 0.22 TCGA-44-A4SU-01 4 55971023 55971023 G A KDR Missense_Mutation p.P592S 0.25 tolerated(0.74) benign(0.002) TCGA-44-A4SU-01 4 6303591 6303591 G A WFS1 Missense_Mutation p.C690Y 0.09 deleterious(0.01) probably_damaging(1) TCGA-44-A4SU-01 4 66189786 66189786 A T EPHA5 3'UTR 0.41 TCGA-44-A4SU-01 4 66467915 66467915 G T EPHA5 Silent p.I118I 0.05 TCGA-44-A4SU-01 4 69520810 69520810 T A UGT2B15 Intron 0.42 TCGA-44-A4SU-01 4 73164061 73164061 C A ADAMTS3 Missense_Mutation p.Q841H 0.21 tolerated(0.13) possibly_damaging(0.572) TCGA-44-A4SU-01 5 135391480 135391480 G A TGFBI Missense_Mutation p.V508I 0.16 tolerated(0.61) benign(0) TCGA-44-A4SU-01 5 138160274 138160274 A T CTNNA1 Missense_Mutation p.Q215L 0.05 deleterious(0) benign(0.012) TCGA-44-A4SU-01 5 140559411 140559411 A G PCDHB8 Missense_Mutation p.Q599R 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.495) TCGA-44-A4SU-01 5 140753953 140753953 G A PCDHGA6 Silent p.R101R 0.35 TCGA-44-A4SU-01 5 140754168 140754168 G T PCDHGA6 Missense_Mutation p.S173I 0.28 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-44-A4SU-01 5 179555604 179555604 G T RASGEF1C Silent p.R149R 0.14 TCGA-44-A4SU-01 5 179555605 179555605 G T RASGEF1C Nonsense_Mutation p.Y148* 0.14 TCGA-44-A4SU-01 5 41762251 41762251 T C OXCT1 Missense_Mutation p.K434E 0.14 tolerated(0.17) benign(0.064) TCGA-44-A4SU-01 5 7724719 7724719 G A ADCY2 Missense_Mutation p.E589K 0.20 deleterious(0) probably_damaging(0.999) TCGA-44-A4SU-01 6 105526455 105526455 T A LIN28B Missense_Mutation p.S184T 0.21 tolerated(0.26) benign(0.045) TCGA-44-A4SU-01 6 160494948 160494948 G T IGF2R Nonsense_Mutation p.G1703* 0.12 TCGA-44-A4SU-01 6 26423183 26423183 C T BTN2A3P RNA 0.20 TCGA-44-A4SU-01 6 56918787 56918787 A G KIAA1586 Missense_Mutation p.H497R 0.51 tolerated(0.98) benign(0.001) TCGA-44-A4SU-01 6 6152090 6152090 G T F13A1 Missense_Mutation p.H667Q 0.22 deleterious(0.02) possibly_damaging(0.449) TCGA-44-A4SU-01 6 69758079 69758079 G T BAI3 Missense_Mutation p.A704S 0.23 deleterious(0.01) benign(0.171) TCGA-44-A4SU-01 7 100682223 100682223 C T MUC17 Missense_Mutation p.T2509I 0.04 benign(0.012) TCGA-44-A4SU-01 7 100817911 100817911 C G NAT16 Missense_Mutation p.E60Q 0.05 deleterious(0.02) possibly_damaging(0.656) TCGA-44-A4SU-01 7 103123390 103123390 G A RELN Missense_Mutation p.R3404C 0.35 deleterious(0) probably_damaging(0.998) TCGA-44-A4SU-01 7 124532424 124532424 G A POT1 Missense_Mutation p.T7I 0.28 deleterious(0.01) benign(0.058) TCGA-44-A4SU-01 7 141672556 141672556 G T TAS2R38 Missense_Mutation p.L312M 0.30 deleterious(0.02) possibly_damaging(0.905) TCGA-44-A4SU-01 7 143048783 143048783 G T CLCN1 Missense_Mutation p.G898W 0.18 deleterious(0.04) probably_damaging(0.93) TCGA-44-A4SU-01 7 143792565 143792565 A G OR2A12 Missense_Mutation p.Y122C 0.07 deleterious(0.02) probably_damaging(0.986) TCGA-44-A4SU-01 7 25175816 25175816 C T C7orf31 Missense_Mutation p.M516I 0.09 tolerated(0.51) benign(0.002) TCGA-44-A4SU-01 7 27196232 27196232 A T HOXA7 5'UTR 0.23 TCGA-44-A4SU-01 7 33185939 33185939 G T BBS9 Missense_Mutation p.L25F 0.15 deleterious(0) probably_damaging(0.997) TCGA-44-A4SU-01 7 4169563 4169563 G T SDK1 Silent p.L1321L 0.14 TCGA-44-A4SU-01 7 43360276 43360276 G A HECW1 Missense_Mutation p.G132E 0.19 deleterious(0) probably_damaging(1) TCGA-44-A4SU-01 7 55241707 55241707 G T EGFR Missense_Mutation p.G719C 0.57 deleterious(0) probably_damaging(0.998) TCGA-44-A4SU-01 7 55249005 55249005 G T EGFR Missense_Mutation p.S768I 0.56 deleterious(0) probably_damaging(1) TCGA-44-A4SU-01 7 6026998 6026998 G A PMS2 Silent p.G466G 0.42 TCGA-44-A4SU-01 7 88963926 88963926 G T ZNF804B Missense_Mutation p.D544Y 0.32 deleterious(0) probably_damaging(0.959) TCGA-44-A4SU-01 8 104831616 104831616 G A RIMS2 Intron 0.15 TCGA-44-A4SU-01 8 124266183 124266183 T A ZHX1 Silent p.T668T 0.13 TCGA-44-A4SU-01 8 145112603 145112603 T A OPLAH Silent p.T390T 0.10 TCGA-44-A4SU-01 8 22023023 22023023 G C BMP1 Missense_Mutation p.E35D 0.17 tolerated_low_confidence(0.16) benign(0.001) TCGA-44-A4SU-01 8 94767325 94767325 G T TMEM67 Silent p.S61S 0.21 TCGA-44-A4SU-01 9 17747126 17747126 G T SH3GL2 Missense_Mutation p.M36I 0.18 deleterious(0.02) possibly_damaging(0.621) TCGA-44-A4SU-01 9 86900404 86900404 C A SLC28A3 Missense_Mutation p.W501C 0.48 deleterious(0) probably_damaging(0.995) TCGA-44-A4SU-01 X 101910401 101910401 G T GPRASP1 Silent p.S520S 0.17 TCGA-44-A4SU-01 X 102754778 102754778 C T RAB40A 3'UTR 0.15 TCGA-44-A4SU-01 X 105278254 105278254 G C SERPINA7 Missense_Mutation p.T339R 0.17 deleterious(0) probably_damaging(0.962) TCGA-44-A4SU-01 X 109693870 109693870 C A RGAG1 Silent p.R9R 0.24 TCGA-44-A4SU-01 X 12725755 12725755 C A FRMPD4 Missense_Mutation p.H485Q 0.20 deleterious(0.01) probably_damaging(1) TCGA-44-A4SU-01 X 133304302 133304302 G A MIR106A RNA 0.15 TCGA-44-A4SU-01 X 13769419 13769419 G A OFD1 Silent p.R329R 0.18 TCGA-44-A4SU-01 X 142605206 142605206 G T SPANXN3 Missense_Mutation p.T5N 0.04 deleterious(0.01) probably_damaging(0.997) TCGA-44-A4SU-01 X 144904397 144904397 G T SLITRK2 Missense_Mutation p.G152W 0.20 deleterious(0) probably_damaging(0.995) TCGA-44-A4SU-01 X 144904398 144904398 G T SLITRK2 Missense_Mutation p.G152V 0.21 deleterious(0) probably_damaging(0.969) TCGA-44-A4SU-01 X 144904885 144904885 A T SLITRK2 Silent p.R314R 0.07 TCGA-44-A4SU-01 X 15315773 15315773 G A ASB11 Missense_Mutation p.R98W 0.04 deleterious(0.02) probably_damaging(0.993) TCGA-44-A4SU-01 X 153579293 153579293 G T FLNA Silent p.V2380V 0.25 TCGA-44-A4SU-01 X 2799177 2799177 G T GYG2 Nonsense_Mutation p.E477* 0.53 TCGA-44-A4SU-01 X 27999365 27999365 T A DCAF8L1 Silent p.V29V 0.16 TCGA-44-A4SU-01 X 30268784 30268784 C A MAGEB1 Silent p.P58P 0.16 TCGA-44-A4SU-01 X 3228212 3228212 G A MXRA5 Missense_Mutation p.H2678Y 0.13 tolerated(0.07) benign(0.007) TCGA-44-A4SU-01 X 54011445 54011445 C T PHF8 Missense_Mutation p.R818Q 0.38 tolerated(0.14) benign(0.1) TCGA-44-A4SU-01 X 55047598 55047598 A T ALAS2 Nonsense_Mutation p.Y175* 0.23 TCGA-44-A4SU-01 X 69504489 69504489 G T RAB41 Missense_Mutation p.C221F 0.17 deleterious_low_confidence(0) benign(0.272) TCGA-44-A4SU-01 X 69639564 69639564 G - KIF4A Frame_Shift_Del p.E1143Rfs*6 0.21 TCGA-44-A4SU-01 X 69647227 69647227 G C GDPD2 Missense_Mutation p.V284L 0.30 tolerated(0.08) possibly_damaging(0.771) TCGA-44-A4SU-01 X 71351249 71351249 C A RGAG4 Missense_Mutation p.G48C 0.05 deleterious_low_confidence(0) probably_damaging(1) TCGA-44-A4SU-01 X 76953083 76953083 G A ATRX Missense_Mutation p.S77L 0.18 possibly_damaging(0.529) TCGA-49-4486-01 10 102799248 102799248 C G SFXN3 Missense_Mutation p.S295C 0.04 deleterious(0.01) probably_damaging(0.964) TCGA-49-4486-01 10 119798615 119798615 C A RAB11FIP2 Missense_Mutation p.G378V 0.34 deleterious(0) possibly_damaging(0.453) TCGA-49-4486-01 10 35500201 35500201 C A CREM Intron 0.25 TCGA-49-4486-01 10 55755364 55755364 T C PCDH15 Intron 0.19 TCGA-49-4486-01 10 75010727 75010727 C A MRPS16 Silent p.L99L 0.34 TCGA-49-4486-01 10 96818250 96818250 G C CYP2C8 Missense_Mutation p.L221V 0.39 tolerated(0.56) benign(0) TCGA-49-4486-01 11 102272716 102272716 G C TMEM123 Missense_Mutation p.Q127E 0.05 deleterious(0.03) benign(0.092) TCGA-49-4486-01 11 118948942 118948942 C T VPS11 Silent p.F606F 0.04 TCGA-49-4486-01 11 121420743 121420743 C T SORL1 Missense_Mutation p.S709L 0.05 tolerated(0.5) benign(0) TCGA-49-4486-01 11 1275485 1275485 C A MUC5B Silent p.A5127A 0.48 TCGA-49-4486-01 11 128781480 128781480 C T KCNJ5 Silent p.F104F 0.09 TCGA-49-4486-01 11 3380816 3380816 G A ZNF195 Silent p.V474V 0.42 TCGA-49-4486-01 11 45928090 45928090 C G C11orf94 3'UTR 0.15 TCGA-49-4486-01 11 55798482 55798482 G T OR5AS1 Missense_Mutation p.Q196H 0.33 deleterious(0) possibly_damaging(0.683) TCGA-49-4486-01 11 55873052 55873052 C T OR8H2 Silent p.F178F 0.13 TCGA-49-4486-01 11 59282631 59282631 G A OR4D9 Silent p.L82L 0.04 TCGA-49-4486-01 11 6191554 6191554 C T OR52B2 Translation_Start_Site p.M1? 0.32 deleterious(0.02) probably_damaging(0.985) TCGA-49-4486-01 11 62656063 62656063 C T SLC3A2 Silent p.L598L 0.17 TCGA-49-4486-01 11 6953446 6953446 G C ZNF215 5'UTR 0.05 TCGA-49-4486-01 11 76637694 76637694 C T ACER3 Missense_Mutation p.S66F 0.15 deleterious(0) possibly_damaging(0.639) TCGA-49-4486-01 12 100649949 100649949 G C DEPDC4 Missense_Mutation p.F252L 0.05 tolerated(0.86) benign(0.011) TCGA-49-4486-01 12 11183031 11183031 T C TAS2R31 Missense_Mutation p.K302E 0.03 deleterious(0.04) benign(0.285) TCGA-49-4486-01 12 48483038 48483038 T C SENP1 Intron 0.44 TCGA-49-4486-01 12 4870202 4870202 G T GALNT8 Missense_Mutation p.A418S 0.41 tolerated(0.48) benign(0.032) TCGA-49-4486-01 12 57009066 57009066 A T BAZ2A Missense_Mutation p.S156R 0.34 deleterious(0.03) probably_damaging(0.991) TCGA-49-4486-01 12 57850041 57850041 C T INHBE Missense_Mutation p.R155C 0.39 deleterious(0.01) possibly_damaging(0.761) TCGA-49-4486-01 12 69993722 69993722 G C CCT2 Silent p.L505L 0.05 TCGA-49-4486-01 13 50123709 50123709 C G RCBTB1 Missense_Mutation p.W310C 0.17 deleterious(0) probably_damaging(1) TCGA-49-4486-01 13 77589622 77589622 G C FBXL3 Missense_Mutation p.L189V 0.15 deleterious(0) possibly_damaging(0.853) TCGA-49-4486-01 14 105413013 105413013 C T AHNAK2 Silent p.L2925L 0.04 TCGA-49-4486-01 14 105413043 105413043 C G AHNAK2 Missense_Mutation p.Q2915H 0.04 benign(0.004) TCGA-49-4486-01 14 22265618 22265618 G T TRAV8-1 Missense_Mutation p.G10W 0.50 tolerated(0.13) probably_damaging(0.917) TCGA-49-4486-01 14 72152196 72152196 G T SIPA1L1 Missense_Mutation p.K1074N 0.57 tolerated(0.44) benign(0.115) TCGA-49-4486-01 14 73437567 73437567 A C ZFYVE1 3'UTR 0.05 TCGA-49-4486-01 15 26793029 26793029 C T GABRB3 Missense_Mutation p.V445M 0.33 deleterious(0) probably_damaging(0.98) TCGA-49-4486-01 15 40505533 40505533 G A BUB1B Missense_Mutation p.D846N 0.30 deleterious(0.02) possibly_damaging(0.651) TCGA-49-4486-01 15 41624440 41624440 G A OIP5 Missense_Mutation p.S107F 0.15 tolerated(0.53) probably_damaging(0.991) TCGA-49-4486-01 15 42139578 42139578 C T PLA2G4B Missense_Mutation p.P895L 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-49-4486-01 15 43620678 43620678 G C LCMT2 Missense_Mutation p.F670L 0.10 tolerated(1) benign(0.009) TCGA-49-4486-01 15 43622436 43622436 C G LCMT2 Missense_Mutation p.Q84H 0.06 deleterious(0) probably_damaging(0.999) TCGA-49-4486-01 15 72020963 72020963 G T THSD4 Missense_Mutation p.G478V 0.05 tolerated(0.1) possibly_damaging(0.627) TCGA-49-4486-01 15 75654689 75654689 C G MAN2C1 Missense_Mutation p.E335Q 0.15 deleterious(0) probably_damaging(1) TCGA-49-4486-01 15 81592196 81592196 C T IL16 Silent p.I843I 0.09 TCGA-49-4486-01 16 24581790 24581790 G T RBBP6 Missense_Mutation p.G1260V 0.41 deleterious_low_confidence(0) unknown(0) TCGA-49-4486-01 16 5075345 5075345 C T NAGPA 3'UTR 0.12 TCGA-49-4486-01 16 57503120 57503121 - A POLR2C Frame_Shift_Ins p.F101Lfs*9 0.24 TCGA-49-4486-01 16 85942710 85942710 G A IRF8 Missense_Mutation p.D97N 0.35 deleterious(0) possibly_damaging(0.707) TCGA-49-4486-01 16 90038109 90038109 C G CENPBD1 Silent p.L74L 0.20 TCGA-49-4486-01 17 10399410 10399410 C A MYH1 Missense_Mutation p.A1676S 0.26 deleterious(0.04) benign(0.4) TCGA-49-4486-01 17 12655756 12655756 G A MYOCD Missense_Mutation p.R384Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-49-4486-01 17 16220083 16220083 T C PIGL Intron 0.29 TCGA-49-4486-01 17 26696372 26696372 C T VTN Missense_Mutation p.E203K 0.06 tolerated(0.07) possibly_damaging(0.775) TCGA-49-4486-01 17 26851622 26851622 C G FOXN1 Silent p.P75P 0.16 TCGA-49-4486-01 17 29758831 29758831 G T RAB11FIP4 Missense_Mutation p.V54L 0.25 deleterious(0.02) probably_damaging(0.994) TCGA-49-4486-01 17 42225308 42225308 C G C17orf53 Missense_Mutation p.S46C 0.04 tolerated(0.06) benign(0.082) TCGA-49-4486-01 17 54450167 54450167 C T ANKFN1 Silent p.L257L 0.14 TCGA-49-4486-01 17 61574336 61574336 G T ACE Silent p.T1227T 0.57 TCGA-49-4486-01 17 62568061 62568061 T C SMURF2 Missense_Mutation p.I291V 0.29 tolerated(1) benign(0.001) TCGA-49-4486-01 17 6493842 6493842 G A KIAA0753 Missense_Mutation p.P850L 0.29 tolerated(0.52) probably_damaging(0.998) TCGA-49-4486-01 17 65083055 65083055 G C HELZ Missense_Mutation p.S1795C 0.06 deleterious_low_confidence(0.03) unknown(0) TCGA-49-4486-01 17 80014187 80014187 G A GPS1 Missense_Mutation p.E359K 0.16 tolerated(0.21) benign(0.382) TCGA-49-4486-01 17 80542037 80542037 G A FOXK2 Missense_Mutation p.E418K 0.15 deleterious(0) possibly_damaging(0.77) TCGA-49-4486-01 18 3729134 3729134 C A DLGAP1 Splice_Site p.X531_splice 0.47 TCGA-49-4486-01 18 44559560 44559560 G A TCEB3B Silent p.G692G 0.15 TCGA-49-4486-01 18 6889985 6889985 C T ARHGAP28 Silent p.F386F 0.05 TCGA-49-4486-01 19 10132255 10132255 C T RDH8 Nonsense_Mutation p.Q276* 0.50 TCGA-49-4486-01 19 10602581 10602581 C T KEAP1 Missense_Mutation p.G333S 0.57 deleterious(0) probably_damaging(1) TCGA-49-4486-01 19 11560101 11560101 A G PRKCSH Silent p.K487K 0.17 TCGA-49-4486-01 19 1619133 1619133 G C TCF3 Missense_Mutation p.S476C 0.06 deleterious(0.05) possibly_damaging(0.572) TCGA-49-4486-01 19 2210737 2210737 G - DOT1L Frame_Shift_Del p.R413Afs*5 0.23 TCGA-49-4486-01 19 2222272 2222272 C G DOT1L Nonsense_Mutation p.S1035* 0.06 TCGA-49-4486-01 19 326574 326574 C G MIER2 Missense_Mutation p.R173T 0.07 tolerated(0.11) benign(0.017) TCGA-49-4486-01 19 38160502 38160502 A C ZNF781 Missense_Mutation p.I183R 0.19 tolerated(0.68) benign(0.384) TCGA-49-4486-01 19 4171672 4171672 C T CREB3L3 Silent p.H364H 0.11 TCGA-49-4486-01 19 42385013 42385013 T C CD79A Missense_Mutation p.L216P 0.50 deleterious(0.05) probably_damaging(0.996) TCGA-49-4486-01 19 43680050 43680050 G C PSG5 Silent p.R227R 0.33 TCGA-49-4486-01 19 46124837 46124837 G A EML2 Silent p.L501L 0.47 TCGA-49-4486-01 19 51325133 51325133 G C KLK1 Intron 0.14 TCGA-49-4486-01 19 51629008 51629008 C T SIGLEC9 Silent p.T192T 0.45 TCGA-49-4486-01 19 52130914 52130914 G - SIGLEC5 Frame_Shift_Del p.S362Pfs*35 0.37 TCGA-49-4486-01 19 53793072 53793072 C T BIRC8 Missense_Mutation p.E186K 0.07 deleterious(0) probably_damaging(0.995) TCGA-49-4486-01 19 58455413 58455413 C G ZNF256 Missense_Mutation p.E17Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-49-4486-01 19 7125477 7125477 G T INSR Silent p.L1025L 0.13 TCGA-49-4486-01 1 11297992 11297992 C G MTOR Missense_Mutation p.E706Q 0.10 tolerated(0.12) probably_damaging(0.986) TCGA-49-4486-01 1 145473380 145473380 C A ANKRD34A Missense_Mutation p.L18I 0.51 deleterious(0.01) possibly_damaging(0.53) TCGA-49-4486-01 1 154987712 154987712 G T ZBTB7B Silent p.P226P 0.17 TCGA-49-4486-01 1 157765949 157765949 G T FCRL1 Missense_Mutation p.D410E 0.30 tolerated(1) benign(0.032) TCGA-49-4486-01 1 15819510 15819510 C T CASP9 Silent p.V393V 0.32 TCGA-49-4486-01 1 158517081 158517081 G T OR6Y1 Missense_Mutation p.A272D 0.51 deleterious(0) possibly_damaging(0.673) TCGA-49-4486-01 1 161736217 161736217 C G ATF6 Missense_Mutation p.L23V 0.09 tolerated_low_confidence(0.29) benign(0.002) TCGA-49-4486-01 1 182847133 182847133 A T DHX9 Intron 0.21 TCGA-49-4486-01 1 215259970 215259970 C G KCNK2 Missense_Mutation p.F102L 0.06 deleterious(0) probably_damaging(0.993) TCGA-49-4486-01 1 215848324 215848324 C A USH2A Missense_Mutation p.S4310I 0.51 possibly_damaging(0.734) TCGA-49-4486-01 1 215914740 215914740 G C USH2A Missense_Mutation p.I3896M 0.15 possibly_damaging(0.522) TCGA-49-4486-01 1 220386243 220386243 T A RAB3GAP2 Missense_Mutation p.L124F 0.56 deleterious(0.01) possibly_damaging(0.867) TCGA-49-4486-01 1 230486821 230486821 C G PGBD5 Silent p.L190L 0.11 TCGA-49-4486-01 1 237049656 237049656 A C MTR Missense_Mutation p.E947A 0.18 tolerated(0.78) benign(0.035) TCGA-49-4486-01 1 248487240 248487240 C G OR2M7 Missense_Mutation p.V211L 0.47 tolerated(0.81) benign(0.032) TCGA-49-4486-01 1 26139275 26139275 C T SEPN1 Missense_Mutation p.S460F 0.43 deleterious(0.01) possibly_damaging(0.572) TCGA-49-4486-01 1 32568034 32568034 C T TMEM39B Silent p.F413F 0.05 TCGA-49-4486-01 1 33149485 33149485 C G RBBP4 3'UTR 0.05 TCGA-49-4486-01 1 46649908 46649908 G A TSPAN1 Missense_Mutation p.D35N 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-49-4486-01 1 46827467 46827467 C G NSUN4 Silent p.L368L 0.21 TCGA-49-4486-01 20 14306198 14306198 C T FLRT3 3'UTR 0.04 TCGA-49-4486-01 20 49209728 49209728 G C FAM65C Missense_Mutation p.R736G 0.31 deleterious(0.02) benign(0.345) TCGA-49-4486-01 20 61143770 61143770 C T C20orf166 5'Flank 0.08 TCGA-49-4486-01 21 15858201 15858201 G A SAMSN1 3'UTR 0.10 TCGA-49-4486-01 21 37420692 37420692 C G SETD4 Missense_Mutation p.E70D 0.38 tolerated(0.47) benign(0.009) TCGA-49-4486-01 21 46908346 46908346 G T COL18A1 Silent p.L817L 0.05 TCGA-49-4486-01 22 21288146 21288146 C G CRKL Missense_Mutation p.L131V 0.11 tolerated(0.06) probably_damaging(0.968) TCGA-49-4486-01 22 26317265 26317265 A G MYO18B Silent p.R1802R 0.22 TCGA-49-4486-01 22 42540366 42540366 G A RP4-669P10.16 5'Flank 0.25 TCGA-49-4486-01 2 101646204 101646204 G A TBC1D8 Silent p.L642L 0.32 TCGA-49-4486-01 2 101646205 101646205 A G TBC1D8 Missense_Mutation p.L642P 0.32 deleterious(0) probably_damaging(1) TCGA-49-4486-01 2 108488039 108488039 G A RGPD4 Silent p.Q1193Q 0.44 TCGA-49-4486-01 2 131976380 131976380 C T POTEE Silent p.V135V 0.21 TCGA-49-4486-01 2 158626930 158626930 C T ACVR1 Missense_Mutation p.R247K 0.32 deleterious(0) probably_damaging(0.982) TCGA-49-4486-01 2 167168258 167168258 C T SCN9A Missense_Mutation p.M3I 0.41 tolerated_low_confidence(0.07) benign(0.004) TCGA-49-4486-01 2 176957977 176957977 C T HOXD13 Missense_Mutation p.P120L 0.36 deleterious(0.01) probably_damaging(0.977) TCGA-49-4486-01 2 179650595 179650595 C T TTN Missense_Mutation p.G784R 0.27 TCGA-49-4486-01 2 209007437 209007437 C T CRYGB Silent p.E151E 0.13 TCGA-49-4486-01 2 214354705 214354705 G C SPAG16 Missense_Mutation p.D321H 0.13 deleterious(0.02) benign(0.024) TCGA-49-4486-01 2 220344819 220344819 G C SPEG Missense_Mutation p.E1767Q 0.05 probably_damaging(0.909) TCGA-49-4486-01 2 38301556 38301556 C T CYP1B1 Missense_Mutation p.D326N 0.24 deleterious(0) probably_damaging(0.999) TCGA-49-4486-01 2 40656137 40656137 G T SLC8A1 Silent p.T428T 0.06 TCGA-49-4486-01 2 48822502 48822502 C G STON1 3'UTR 0.25 TCGA-49-4486-01 2 51253512 51253512 C G NRXN1 Missense_Mutation p.E290Q 0.15 tolerated(0.3) benign(0.001) TCGA-49-4486-01 2 72945355 72945355 C T EXOC6B Silent p.V182V 0.15 TCGA-49-4486-01 2 75929268 75929268 C G GCFC2 Intron 0.11 TCGA-49-4486-01 2 86732844 86732844 C T CHMP3 3'UTR 0.38 TCGA-49-4486-01 2 95815686 95815686 C T ZNF514 Missense_Mutation p.D182N 0.12 tolerated(0.23) benign(0.013) TCGA-49-4486-01 2 99980189 99980189 A C EIF5B Missense_Mutation p.K334T 0.47 benign(0.403) TCGA-49-4486-01 2 99998629 99998629 G C EIF5B Missense_Mutation p.R690T 0.07 benign(0.089) TCGA-49-4486-01 3 113225439 113225439 C T SPICE1 Missense_Mutation p.R5K 0.08 tolerated(0.08) probably_damaging(0.995) TCGA-49-4486-01 3 113528247 113528247 G C ATP6V1A Missense_Mutation p.Q609H 0.07 tolerated(0.08) benign(0.021) TCGA-49-4486-01 3 151475041 151475041 G C AADACL2 Missense_Mutation p.E289Q 0.05 deleterious(0.01) probably_damaging(0.945) TCGA-49-4486-01 3 179132738 179132738 G C GNB4 Missense_Mutation p.S122C 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-49-4486-01 3 183508768 183508768 G A YEATS2 Missense_Mutation p.G1033R 0.30 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-49-4486-01 3 186370114 186370114 G T FETUB Silent p.V281V 0.33 TCGA-49-4486-01 3 25833286 25833286 G C OXSM Missense_Mutation p.D259H 0.07 deleterious(0.05) benign(0.046) TCGA-49-4486-01 3 28379446 28379446 C G AZI2 Missense_Mutation p.E141Q 0.05 deleterious(0) probably_damaging(0.979) TCGA-49-4486-01 3 48605555 48605555 C G COL7A1 Missense_Mutation p.D2615H 0.12 probably_damaging(0.984) TCGA-49-4486-01 3 64148775 64148775 C T PRICKLE2 Missense_Mutation p.E59K 0.04 tolerated(0.05) benign(0.043) TCGA-49-4486-01 4 134111323 134111323 T C PCDH10 3'UTR 0.42 TCGA-49-4486-01 4 13605037 13605037 G C BOD1L1 Missense_Mutation p.Q1163E 0.07 benign(0.009) TCGA-49-4486-01 4 152096011 152096011 G - SH3D19 Frame_Shift_Del p.R169Dfs*63 0.40 TCGA-49-4486-01 4 153691681 153691681 G A TIGD4 Missense_Mutation p.S159L 0.09 tolerated(0.22) benign(0.003) TCGA-49-4486-01 4 154215474 154215474 C G TRIM2 Missense_Mutation p.S208C 0.06 tolerated(0.09) possibly_damaging(0.662) TCGA-49-4486-01 4 156634681 156634681 C G GUCY1A3 Silent p.L506L 0.08 TCGA-49-4486-01 4 185697770 185697770 G C ACSL1 Silent p.L208L 0.05 TCGA-49-4486-01 4 46307713 46307713 G T GABRA2 Nonsense_Mutation p.S192* 0.42 TCGA-49-4486-01 4 71844961 71844961 G T MOB1B Nonsense_Mutation p.E181* 0.12 TCGA-49-4486-01 5 1038130 1038130 C T NKD2 Missense_Mutation p.S333F 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-49-4486-01 5 121355964 121355964 G A SRFBP1 Silent p.K178K 0.33 TCGA-49-4486-01 5 135496714 135496714 C T SMAD5 Silent p.S191S 0.32 TCGA-49-4486-01 5 138661216 138661216 G C MATR3 Missense_Mutation p.E746Q 0.04 tolerated(0.07) possibly_damaging(0.637) TCGA-49-4486-01 5 140222271 140222271 C T PCDHA8 Silent p.F455F 0.11 TCGA-49-4486-01 5 140482231 140482231 C G PCDHB3 Missense_Mutation p.F666L 0.06 deleterious_low_confidence(0) benign(0.286) TCGA-49-4486-01 5 140574422 140574422 T C PCDHB10 Missense_Mutation p.F766S 0.38 deleterious_low_confidence(0) benign(0.41) TCGA-49-4486-01 5 140603931 140603931 C T PCDHB14 Missense_Mutation p.S285L 0.33 deleterious_low_confidence(0) possibly_damaging(0.864) TCGA-49-4486-01 5 151173756 151173756 A G G3BP1 Missense_Mutation p.I130V 0.22 tolerated(0.11) benign(0.28) TCGA-49-4486-01 5 176025029 176025029 C T GPRIN1 Missense_Mutation p.E603K 0.15 tolerated(0.23) benign(0.337) TCGA-49-4486-01 5 32135777 32135777 C A GOLPH3 Missense_Mutation p.D125Y 0.37 deleterious(0.01) probably_damaging(0.981) TCGA-49-4486-01 5 33684050 33684050 C T ADAMTS12 Missense_Mutation p.E249K 0.12 deleterious(0) probably_damaging(1) TCGA-49-4486-01 5 33881537 33881537 C T ADAMTS12 Missense_Mutation p.R59Q 0.11 tolerated(0.07) benign(0.042) TCGA-49-4486-01 5 895027 895027 T C TRIP13 Missense_Mutation p.V73A 0.26 deleterious(0) benign(0.06) TCGA-49-4486-01 6 106968226 106968226 G A AIM1 Missense_Mutation p.R640K 0.06 tolerated(0.84) benign(0.003) TCGA-49-4486-01 6 111695225 111695225 C A REV3L Nonsense_Mutation p.G1445* 0.27 TCGA-49-4486-01 6 117589584 117589584 G A VGLL2 Silent p.L107L 0.10 TCGA-49-4486-01 6 13306611 13306611 C G TBC1D7 Intron 0.17 TCGA-49-4486-01 6 153076459 153076459 C T VIP Nonsense_Mutation p.Q96* 0.07 TCGA-49-4486-01 6 153296529 153296529 C T FBXO5 Missense_Mutation p.E111K 0.11 tolerated(0.11) benign(0.014) TCGA-49-4486-01 6 158487540 158487540 C A SYNJ2 Silent p.I530I 0.09 TCGA-49-4486-01 6 161470151 161470151 T G MAP3K4 Missense_Mutation p.F283V 0.08 deleterious(0.02) benign(0.394) TCGA-49-4486-01 6 2685595 2685595 G A MYLK4 Silent p.H160H 0.39 TCGA-49-4486-01 6 30708997 30708997 C T FLOT1 Silent p.Q108Q 0.07 TCGA-49-4486-01 6 3119649 3119649 C A BPHL Intron 0.39 TCGA-49-4486-01 6 32150773 32150773 C G AGER Missense_Mutation p.R179T 0.18 deleterious(0.03) benign(0.214) TCGA-49-4486-01 6 32150922 32150922 C T AGER Silent p.L159L 0.06 TCGA-49-4486-01 6 33263957 33263957 C T RGL2 Missense_Mutation p.D206N 0.04 tolerated(0.42) benign(0.149) TCGA-49-4486-01 6 34101351 34101351 G T GRM4 5'UTR 0.25 TCGA-49-4486-01 6 43251404 43251404 C T TTBK1 Nonsense_Mutation p.R976* 0.38 TCGA-49-4486-01 6 76551060 76551060 G A MYO6 Missense_Mutation p.E261K 0.08 tolerated(0.82) unknown(0) TCGA-49-4486-01 6 76660781 76660781 G C IMPG1 Missense_Mutation p.S441C 0.04 deleterious(0.03) probably_damaging(0.935) TCGA-49-4486-01 6 84234492 84234492 T A PRSS35 3'UTR 0.36 TCGA-49-4486-01 7 100683576 100683576 C A MUC17 Missense_Mutation p.T2960N 0.34 possibly_damaging(0.892) TCGA-49-4486-01 7 102246397 102246397 G A RASA4 Silent p.P112P 0.10 TCGA-49-4486-01 7 135310104 135310104 G T NUP205 Splice_Site p.X1557_splice 0.37 TCGA-49-4486-01 7 150773144 150773144 C G SLC4A2 Silent p.L1172L 0.04 TCGA-49-4486-01 7 21923947 21923947 C T DNAH11 Silent p.I4149I 0.11 TCGA-49-4486-01 7 36656065 36656065 C T AOAH Missense_Mutation p.G256E 0.10 deleterious(0.01) benign(0.32) TCGA-49-4486-01 7 95614143 95614143 G C DYNC1I1 Missense_Mutation p.L216F 0.35 deleterious(0) probably_damaging(0.998) TCGA-49-4486-01 8 144812586 144812586 A C FAM83H Missense_Mutation p.L56R 0.18 deleterious(0) probably_damaging(1) TCGA-49-4486-01 8 145581359 145581359 G A FBXL6 Silent p.G168G 0.14 TCGA-49-4486-01 8 27462598 27462598 G A CLU Silent p.R224R 0.22 TCGA-49-4486-01 8 77764427 77764427 C A ZFHX4 Missense_Mutation p.P1757Q 0.33 possibly_damaging(0.904) TCGA-49-4486-01 9 101908883 101908883 C T TGFBR1 Missense_Mutation p.S416F 0.03 tolerated(0.68) benign(0.017) TCGA-49-4486-01 9 104357089 104357089 T A PPP3R2 Missense_Mutation p.S42C 0.39 deleterious(0) probably_damaging(0.929) TCGA-49-4486-01 9 104357090 104357090 C T PPP3R2 Silent p.L41L 0.39 TCGA-49-4486-01 9 107332126 107332126 G A OR13C8 Silent p.L226L 0.06 TCGA-49-4486-01 9 107332309 107332309 G A OR13C8 Missense_Mutation p.M287I 0.05 tolerated(0.09) benign(0.111) TCGA-49-4486-01 9 112015721 112015721 C G EPB41L4B Missense_Mutation p.A427P 0.11 deleterious(0.02) probably_damaging(0.949) TCGA-49-4486-01 9 129453345 129453345 C G LMX1B Missense_Mutation p.S186C 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-49-4486-01 9 139400074 139400074 C A NOTCH1 Missense_Mutation p.C1425F 0.21 deleterious(0) probably_damaging(0.999) TCGA-49-4486-01 9 15486913 15486913 G C PSIP1 Nonsense_Mutation p.S102* 0.16 TCGA-49-4486-01 9 16437286 16437286 C T BNC2 Silent p.E302E 0.07 TCGA-49-4486-01 9 21862072 21862072 C G MTAP 3'UTR 0.18 TCGA-49-4486-01 9 32543115 32543115 C G TOPORS Missense_Mutation p.D470H 0.07 deleterious(0) probably_damaging(0.979) TCGA-49-4486-01 9 34242054 34242054 C G UBAP1 Missense_Mutation p.S408C 0.04 tolerated(0.08) probably_damaging(0.927) TCGA-49-4486-01 9 35561270 35561270 G C RUSC2 Missense_Mutation p.G1481A 0.05 deleterious(0.01) benign(0.307) TCGA-49-4486-01 9 35707217 35707217 C T TLN1 Missense_Mutation p.A1603T 0.51 tolerated(0.08) possibly_damaging(0.785) TCGA-49-4486-01 9 35794089 35794089 G C NPR2 Missense_Mutation p.E288Q 0.07 tolerated(0.25) benign(0.14) TCGA-49-4486-01 9 80430572 80430572 C G GNAQ Missense_Mutation p.D146H 0.06 deleterious(0.03) benign(0.043) TCGA-49-4486-01 X 153223608 153223608 G A HCFC1 Silent p.I632I 0.26 TCGA-49-4486-01 X 35988982 35988982 T C CXorf22 Missense_Mutation p.Y638H 0.73 deleterious(0) probably_damaging(1) TCGA-49-4486-01 X 53254005 53254005 C T KDM5C Missense_Mutation p.E23K 0.26 deleterious(0) possibly_damaging(0.891) TCGA-49-4486-01 Y 15372253 15372253 G A UTY Nonsense_Mutation p.Q1251* 0.12 TCGA-49-4487-01 10 103547259 103547259 C T MGEA5 Missense_Mutation p.E826K 0.06 tolerated(0.53) probably_damaging(0.993) TCGA-49-4487-01 10 118314905 118314905 G T PNLIP Nonsense_Mutation p.G233* 0.07 TCGA-49-4487-01 10 129905011 129905011 C G MKI67 Missense_Mutation p.R1698T 0.11 deleterious(0.02) possibly_damaging(0.872) TCGA-49-4487-01 10 129913540 129913540 C A MKI67 Missense_Mutation p.G378C 0.08 deleterious(0.02) probably_damaging(0.956) TCGA-49-4487-01 10 133948583 133948583 G T JAKMIP3 Missense_Mutation p.Q296H 0.10 tolerated(0.08) probably_damaging(0.996) TCGA-49-4487-01 10 23270395 23270395 G T ARMC3 Missense_Mutation p.G348V 0.16 deleterious(0.03) benign(0.297) TCGA-49-4487-01 10 25284575 25284575 C G ENKUR Missense_Mutation p.K149N 0.17 deleterious(0) probably_damaging(0.963) TCGA-49-4487-01 10 26463396 26463396 G T MYO3A Missense_Mutation p.E1401D 0.18 tolerated_low_confidence(0.14) benign(0.003) TCGA-49-4487-01 10 37455611 37455611 G T ANKRD30A Nonsense_Mutation p.G659* 0.14 TCGA-49-4487-01 10 43650878 43650878 G T CSGALNACT2 Missense_Mutation p.R94L 0.23 tolerated(0.22) benign(0.005) TCGA-49-4487-01 10 48414410 48414410 T C GDF2 Missense_Mutation p.Y153C 0.13 deleterious(0) probably_damaging(0.937) TCGA-49-4487-01 10 70231550 70231550 C G DNA2 Missense_Mutation p.E110D 0.12 tolerated(0.32) benign(0.009) TCGA-49-4487-01 10 72292490 72292490 G C PALD1 Silent p.V249V 0.13 TCGA-49-4487-01 10 72360525 72360525 C A PRF1 Missense_Mutation p.G45V 0.10 deleterious(0) probably_damaging(0.999) TCGA-49-4487-01 10 73548714 73548714 G C CDH23 Silent p.L1951L 0.17 TCGA-49-4487-01 10 73548780 73548780 G A CDH23 Silent p.V1973V 0.23 TCGA-49-4487-01 10 92502209 92502209 C A HTR7 3'UTR 0.08 TCGA-49-4487-01 10 93572 93572 C A TUBB8 Missense_Mutation p.A254S 0.19 deleterious_low_confidence(0.02) benign(0.294) TCGA-49-4487-01 10 93573 93573 C G TUBB8 Silent p.L253L 0.19 TCGA-49-4487-01 10 96612523 96612523 G T CYP2C19 Missense_Mutation p.R442L 0.07 deleterious(0.01) benign(0.303) TCGA-49-4487-01 11 103908282 103908282 C G DDI1 Silent p.L244L 0.18 TCGA-49-4487-01 11 111750182 111750182 G T C11orf1 5'UTR 0.10 TCGA-49-4487-01 11 116701581 116701581 G C APOC3 Missense_Mutation p.V50L 0.09 deleterious(0.01) possibly_damaging(0.524) TCGA-49-4487-01 11 117279605 117279605 G T CEP164 Splice_Site p.X1204_splice 0.15 TCGA-49-4487-01 11 123847504 123847504 G C OR10S1 Missense_Mutation p.P299A 0.13 deleterious(0) probably_damaging(0.997) TCGA-49-4487-01 11 1263496 1263496 G A MUC5B Missense_Mutation p.V1796M 0.10 unknown(0) TCGA-49-4487-01 11 134063940 134063940 C G NCAPD3 Missense_Mutation p.A599P 0.17 deleterious(0) probably_damaging(0.997) TCGA-49-4487-01 11 134063941 134063941 C A NCAPD3 Missense_Mutation p.Q598H 0.17 deleterious(0) probably_damaging(0.99) TCGA-49-4487-01 11 16838765 16838765 C A PLEKHA7 Missense_Mutation p.G483V 0.17 tolerated(0.14) benign(0.027) TCGA-49-4487-01 11 18269519 18269519 G C SAA2 Missense_Mutation p.L14V 0.15 tolerated(0.15) probably_damaging(0.998) TCGA-49-4487-01 11 31329387 31329387 C A DCDC1 Missense_Mutation p.G78V 0.17 deleterious(0.01) probably_damaging(1) TCGA-49-4487-01 11 45671151 45671151 G A CHST1 3'UTR 0.31 TCGA-49-4487-01 11 4944910 4944910 G T OR51G1 Nonsense_Mutation p.Y220* 0.18 TCGA-49-4487-01 11 49974366 49974366 C A OR4C13 Missense_Mutation p.T131N 0.12 deleterious_low_confidence(0.01) benign(0.288) TCGA-49-4487-01 11 5080148 5080148 T A OR52E2 Missense_Mutation p.K237M 0.25 deleterious(0) probably_damaging(0.999) TCGA-49-4487-01 11 55340043 55340043 G T OR4C16 Missense_Mutation p.W147L 0.22 deleterious(0) probably_damaging(0.911) TCGA-49-4487-01 11 55944982 55944982 G T OR5J2 Missense_Mutation p.V297L 0.22 deleterious(0) possibly_damaging(0.856) TCGA-49-4487-01 11 56143178 56143178 C A OR8U1 Missense_Mutation p.L27I 0.16 deleterious(0) benign(0.405) TCGA-49-4487-01 11 57367632 57367640 CAGATTCTC - SERPING1 In_Frame_Del p.D112_P114del 0.09 TCGA-49-4487-01 11 57564429 57564429 G T CTNND1 Silent p.R307R 0.25 TCGA-49-4487-01 11 59132182 59132182 C A OR5AN1 Missense_Mutation p.S84Y 0.21 tolerated(0.18) benign(0.027) TCGA-49-4487-01 11 6423818 6423818 C A APBB1 Silent p.G414G 0.19 TCGA-49-4487-01 11 6458780 6458780 T C HPX Missense_Mutation p.Y198C 0.15 deleterious(0) probably_damaging(1) TCGA-49-4487-01 11 66335003 66335003 A G CTSF Missense_Mutation p.I148T 0.11 tolerated(0.1) benign(0.054) TCGA-49-4487-01 11 7022175 7022175 A G ZNF214 Missense_Mutation p.C247R 0.09 deleterious(0.04) benign(0) TCGA-49-4487-01 11 77921493 77921493 C T USP35 Silent p.Y864Y 0.05 TCGA-49-4487-01 11 78381548 78381548 C T TENM4 Missense_Mutation p.D1948N 0.16 tolerated(0.06) probably_damaging(0.929) TCGA-49-4487-01 12 102811579 102811579 T G IGF1 3'UTR 0.07 TCGA-49-4487-01 12 107937905 107937905 C A BTBD11 Silent p.L493L 0.13 TCGA-49-4487-01 12 108042999 108042999 T A BTBD11 Missense_Mutation p.L980H 0.08 deleterious(0) probably_damaging(0.995) TCGA-49-4487-01 12 109306415 109306415 G A SVOP Nonsense_Mutation p.R450* 0.08 TCGA-49-4487-01 12 11149674 11149674 A - TAS2R20 Frame_Shift_Del p.F267Lfs*13 0.17 TCGA-49-4487-01 12 123186931 123186931 G T HCAR2 Silent p.S300S 0.11 TCGA-49-4487-01 12 125613889 125613889 G T AACS Missense_Mutation p.V478F 0.14 deleterious(0) possibly_damaging(0.691) TCGA-49-4487-01 12 129559047 129559047 C A TMEM132D Missense_Mutation p.Q891H 0.12 tolerated(0.09) benign(0.008) TCGA-49-4487-01 12 130648268 130648268 C T FZD10 Missense_Mutation p.R261C 0.09 deleterious(0) probably_damaging(0.999) TCGA-49-4487-01 12 133198459 133198459 C - P2RX2 Frame_Shift_Del p.I467Sfs*? 0.11 TCGA-49-4487-01 12 13720066 13720066 G T GRIN2B Missense_Mutation p.L831I 0.24 deleterious(0) probably_damaging(0.994) TCGA-49-4487-01 12 16704097 16704097 G A LMO3 3'UTR 0.15 TCGA-49-4487-01 12 21196363 21196363 C A SLCO1B7 Missense_Mutation p.P228T 0.06 deleterious(0) probably_damaging(0.999) TCGA-49-4487-01 12 30881655 30881655 C A CAPRIN2 Missense_Mutation p.W570L 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-49-4487-01 12 40114727 40114727 G A C12orf40 Missense_Mutation p.D545N 0.08 deleterious(0.03) benign(0.001) TCGA-49-4487-01 12 40707882 40707882 G A LRRK2 Missense_Mutation p.D1549N 0.09 tolerated(0.62) benign(0.002) TCGA-49-4487-01 12 48919525 48919525 G T OR8S1 Silent p.L37L 0.09 TCGA-49-4487-01 12 49742639 49742639 G C DNAJC22 5'UTR 0.10 TCGA-49-4487-01 12 50589612 50589612 C T LIMA1 Splice_Site p.X344_splice 0.06 TCGA-49-4487-01 12 5153913 5153913 A G KCNA5 Missense_Mutation p.I200M 0.08 deleterious(0.04) benign(0.339) TCGA-49-4487-01 12 55523851 55523851 C G OR9K2 Missense_Mutation p.S100C 0.06 deleterious(0) probably_damaging(0.977) TCGA-49-4487-01 12 57974797 57974797 G T KIF5A Missense_Mutation p.R866M 0.15 deleterious(0) probably_damaging(0.997) TCGA-49-4487-01 12 7528081 7528081 C T CD163L1 Missense_Mutation p.D933N 0.17 tolerated(0.92) probably_damaging(0.951) TCGA-49-4487-01 12 75444222 75444222 C G KCNC2 Missense_Mutation p.Q521H 0.09 tolerated(0.17) benign(0.013) TCGA-49-4487-01 12 75444888 75444888 G A KCNC2 Silent p.V299V 0.14 TCGA-49-4487-01 12 85285712 85285712 G C SLC6A15 Missense_Mutation p.A63G 0.09 tolerated(0.25) benign(0.036) TCGA-49-4487-01 12 8688715 8688715 C T CLEC4E Silent p.V153V 0.10 TCGA-49-4487-01 12 9089500 9089500 A T PHC1 Missense_Mutation p.Y806F 0.10 tolerated(0.7) unknown(0) TCGA-49-4487-01 13 19748131 19748131 C A TUBA3C Missense_Mutation p.V409L 0.10 deleterious_low_confidence(0.02) benign(0.178) TCGA-49-4487-01 13 52539088 52539088 C A ATP7B Missense_Mutation p.V597F 0.17 deleterious(0) probably_damaging(1) TCGA-49-4487-01 13 77779653 77779653 T G MYCBP2 Missense_Mutation p.K1186Q 0.13 possibly_damaging(0.851) TCGA-49-4487-01 13 88328487 88328487 G T SLITRK5 Nonsense_Mutation p.E282* 0.13 TCGA-49-4487-01 14 103596402 103596402 G T TNFAIP2 Missense_Mutation p.V347L 0.38 tolerated(0.26) benign(0.209) TCGA-49-4487-01 14 103596404 103596404 G T TNFAIP2 Silent p.V347V 0.36 TCGA-49-4487-01 14 106539483 106539483 C A IGHV1-8 Silent p.V11V 0.27 TCGA-49-4487-01 14 106725498 106725498 C A IGHV3-23 Missense_Mutation p.Q18H 0.18 tolerated_low_confidence(0.09) benign(0.168) TCGA-49-4487-01 14 21795868 21795868 G T RPGRIP1 Nonsense_Mutation p.E933* 0.09 TCGA-49-4487-01 14 22564597 22564597 A T TRDV1 Splice_Site p.X17_splice 0.35 TCGA-49-4487-01 14 24618772 24618772 G C RNF31 Missense_Mutation p.Q263H 0.26 tolerated(0.15) benign(0.004) TCGA-49-4487-01 14 25103412 25103412 T A GZMB 5'UTR 0.36 TCGA-49-4487-01 14 45669130 45669130 C G FANCM Missense_Mutation p.I2022M 0.06 deleterious(0) probably_damaging(0.999) TCGA-49-4487-01 14 68256100 68256100 G C ZFYVE26 Missense_Mutation p.L991V 0.07 deleterious(0) possibly_damaging(0.894) TCGA-49-4487-01 14 91626659 91626659 G T C14orf159 Silent p.L7L 0.23 TCGA-49-4487-01 15 28491134 28491134 G C HERC2 Missense_Mutation p.A1157G 0.12 benign(0.039) TCGA-49-4487-01 15 40757633 40757633 A T BAHD1 Missense_Mutation p.R718W 0.17 deleterious(0) probably_damaging(0.999) TCGA-49-4487-01 15 48755419 48755419 C A FBN1 Missense_Mutation p.C1695F 0.19 probably_damaging(0.997) TCGA-49-4487-01 15 58834830 58834830 A T LIPC Missense_Mutation p.H185L 0.10 tolerated(0.11) benign(0.102) TCGA-49-4487-01 15 65553264 65553264 T A PARP16 Silent p.R264R 0.15 TCGA-49-4487-01 15 75983101 75983101 G A CSPG4 Missense_Mutation p.T102M 0.07 tolerated(0.22) benign(0.017) TCGA-49-4487-01 15 83221230 83221230 C G CPEB1 Missense_Mutation p.E400D 0.15 tolerated(0.54) benign(0.101) TCGA-49-4487-01 15 90808965 90808965 C T NGRN Silent p.L7L 0.15 TCGA-49-4487-01 16 12142251 12142251 G T SNX29 Silent p.A174A 0.18 TCGA-49-4487-01 16 15815397 15815397 G C MYH11 Missense_Mutation p.S1494C 0.05 probably_damaging(0.933) TCGA-49-4487-01 16 2147731 2147731 C G PKD1 Missense_Mutation p.K3406N 0.04 benign(0.062) TCGA-49-4487-01 16 239215 239215 C G LUC7L Missense_Mutation p.K366N 0.07 deleterious_low_confidence(0) unknown(0) TCGA-49-4487-01 16 29899882 29899882 C A SEZ6L2 Missense_Mutation p.G340C 0.14 deleterious(0) possibly_damaging(0.854) TCGA-49-4487-01 16 3074344 3074344 C T THOC6 Missense_Mutation p.P6L 0.13 deleterious_low_confidence(0) benign(0.026) TCGA-49-4487-01 16 30750800 30750800 G T SRCAP Missense_Mutation p.G3147W 0.20 unknown(0) TCGA-49-4487-01 16 30999168 30999168 C A HSD3B7 Missense_Mutation p.F258L 0.12 deleterious(0.01) possibly_damaging(0.877) TCGA-49-4487-01 16 48226557 48226557 G T ABCC11 Silent p.S860S 0.16 TCGA-49-4487-01 16 70602365 70602365 G T SF3B3 Silent p.V1044V 0.12 TCGA-49-4487-01 17 10322075 10322076 - A MYH8 Frame_Shift_Ins p.W133Lfs*30 0.09 TCGA-49-4487-01 17 10545805 10545805 A T MYH3 Missense_Mutation p.V606E 0.05 deleterious(0) probably_damaging(0.995) TCGA-49-4487-01 17 12905609 12905609 G C ELAC2 Missense_Mutation p.P429R 0.09 deleterious(0) probably_damaging(0.997) TCGA-49-4487-01 17 16612677 16612677 G C CCDC144A Missense_Mutation p.V436L 0.07 deleterious(0.01) benign(0.417) TCGA-49-4487-01 17 16612733 16612733 G C CCDC144A Missense_Mutation p.M454I 0.12 tolerated(0.1) benign(0.006) TCGA-49-4487-01 17 17152296 17152296 G A COPS3 Missense_Mutation p.H361Y 0.08 tolerated(0.06) benign(0.081) TCGA-49-4487-01 17 18922736 18922736 G T SLC5A10 Silent p.R430R 0.26 TCGA-49-4487-01 17 25924462 25924462 G A KSR1 Missense_Mutation p.A353T 0.18 deleterious(0.05) benign(0.24) TCGA-49-4487-01 17 26087144 26087144 A C NOS2 Missense_Mutation p.I1024S 0.07 deleterious(0) possibly_damaging(0.846) TCGA-49-4487-01 17 28417673 28417673 A G EFCAB5 Missense_Mutation p.I1306M 0.15 tolerated(0.06) benign(0.229) TCGA-49-4487-01 17 31439050 31439050 G T ASIC2 Missense_Mutation p.N248K 0.21 deleterious(0) probably_damaging(0.982) TCGA-49-4487-01 17 39580631 39580631 C G KRT37 Missense_Mutation p.V49L 0.16 tolerated(1) benign(0.003) TCGA-49-4487-01 17 39644973 39644973 G A KRT36 Silent p.L155L 0.06 TCGA-49-4487-01 17 40939540 40939540 C G WNK4 Missense_Mutation p.A574G 0.10 tolerated(0.06) unknown(0) TCGA-49-4487-01 17 42153250 42153250 C A G6PC3 Missense_Mutation p.L294M 0.13 tolerated(0.1) possibly_damaging(0.786) TCGA-49-4487-01 17 4356383 4356383 G T SPNS3 Missense_Mutation p.R332S 0.12 tolerated(0.13) benign(0.107) TCGA-49-4487-01 17 45363775 45363775 C A ITGB3 Missense_Mutation p.A255D 0.17 deleterious(0) probably_damaging(0.998) TCGA-49-4487-01 17 56650541 56650541 C G TEX14 Splice_Site p.X1217_splice 0.09 TCGA-49-4487-01 17 650508 650508 C A GEMIN4 Nonsense_Mutation p.E259* 0.10 TCGA-49-4487-01 17 65882262 65882262 G A BPTF Intron 0.10 TCGA-49-4487-01 17 74150404 74150404 A G RNF157 Silent p.N590N 0.15 TCGA-49-4487-01 17 7578398 7578398 G - TP53 Frame_Shift_Del p.H178Tfs*69 0.11 TCGA-49-4487-01 17 7579457 7579457 G A TP53 Missense_Mutation p.P77L 0.10 deleterious(0.04) benign(0.169) TCGA-49-4487-01 17 7662780 7662780 G T DNAH2 Missense_Mutation p.R830L 0.21 benign(0.03) TCGA-49-4487-01 17 78175572 78175572 C G CARD14 Missense_Mutation p.F627L 0.07 tolerated(0.67) benign(0.009) TCGA-49-4487-01 17 78280178 78280178 G T RNF213 Missense_Mutation p.E779D 0.22 benign(0.015) TCGA-49-4487-01 17 79650870 79650870 C A ARL16 5'UTR 0.14 TCGA-49-4487-01 17 8138501 8138501 G A CTC1 Nonsense_Mutation p.Q437* 0.11 TCGA-49-4487-01 18 43249369 43249369 C G SLC14A2 Missense_Mutation p.A712G 0.18 deleterious(0.04) probably_damaging(0.999) TCGA-49-4487-01 18 5395092 5395092 C A EPB41L3 Missense_Mutation p.G1043W 0.16 deleterious(0) probably_damaging(1) TCGA-49-4487-01 18 5443878 5443878 T C EPB41L3 Missense_Mutation p.N163S 0.05 deleterious(0.01) possibly_damaging(0.719) TCGA-49-4487-01 18 61305132 61305132 C A SERPINB4 Missense_Mutation p.A332S 0.05 tolerated(1) benign(0.01) TCGA-49-4487-01 18 66721318 66721318 G T CCDC102B Nonsense_Mutation p.E496* 0.12 TCGA-49-4487-01 18 74154561 74154561 T G ZNF516 Missense_Mutation p.R150S 0.18 deleterious(0) benign(0.08) TCGA-49-4487-01 18 77455261 77455261 G T CTDP1 Silent p.P117P 0.15 TCGA-49-4487-01 19 11527319 11527319 C A RGL3 Missense_Mutation p.V132L 0.23 tolerated(0.35) benign(0.082) TCGA-49-4487-01 19 11978327 11978327 G T ZNF439 Missense_Mutation p.C148F 0.24 tolerated(0.36) benign(0.013) TCGA-49-4487-01 19 1207120 1207120 G T STK11 Nonsense_Mutation p.E70* 0.23 TCGA-49-4487-01 19 1578464 1578464 C A MBD3 Missense_Mutation p.V251L 0.18 deleterious_low_confidence(0.03) benign(0.126) TCGA-49-4487-01 19 15905246 15905246 C T OR10H5 Silent p.L130L 0.08 TCGA-49-4487-01 19 19162731 19162731 C T ARMC6 Silent p.L194L 0.18 TCGA-49-4487-01 19 22157095 22157095 A T ZNF208 Missense_Mutation p.H247Q 0.06 deleterious(0) possibly_damaging(0.572) TCGA-49-4487-01 19 32902281 32902281 A G DPY19L3 Intron 0.11 TCGA-49-4487-01 19 36831713 36831713 G A ZFP14 Missense_Mutation p.P339S 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-49-4487-01 19 37005662 37005662 C G ZNF260 Missense_Mutation p.G160A 0.10 deleterious(0) possibly_damaging(0.693) TCGA-49-4487-01 19 38997148 38997148 C G RYR1 Missense_Mutation p.T2885R 0.12 benign(0.406) TCGA-49-4487-01 19 39001357 39001357 A G RYR1 Missense_Mutation p.T3020A 0.16 benign(0.009) TCGA-49-4487-01 19 41854260 41854260 C T TGFB1 Silent p.R152R 0.08 TCGA-49-4487-01 19 43679369 43679369 G C PSG5 Missense_Mutation p.S321C 0.10 deleterious(0.02) possibly_damaging(0.862) TCGA-49-4487-01 19 43702175 43702175 C A PSG4 Missense_Mutation p.S228I 0.28 deleterious(0) probably_damaging(0.999) TCGA-49-4487-01 19 45452505 45452505 A T APOC2 Nonstop_Mutation p.*102Lext*23 0.17 TCGA-49-4487-01 19 46519634 46519634 G C CCDC61 Missense_Mutation p.Q358H 0.09 deleterious(0) possibly_damaging(0.891) TCGA-49-4487-01 19 49351253 49351253 C A PLEKHA4 Silent p.T490T 0.14 TCGA-49-4487-01 19 50204052 50204052 C G CPT1C Silent p.S131S 0.13 TCGA-49-4487-01 19 52000183 52000183 C T SIGLEC12 Missense_Mutation p.G517E 0.08 tolerated(0.15) possibly_damaging(0.449) TCGA-49-4487-01 19 52130828 52130828 G T SIGLEC5 Missense_Mutation p.P390H 0.09 deleterious(0.02) probably_damaging(0.998) TCGA-49-4487-01 19 52272055 52272055 C G FPR2 Missense_Mutation p.I48M 0.14 deleterious(0.02) probably_damaging(0.99) TCGA-49-4487-01 19 52394602 52394602 C A ZNF649 Missense_Mutation p.G263W 0.18 deleterious(0.02) probably_damaging(0.96) TCGA-49-4487-01 19 52399800 52399800 C T ZNF649 Missense_Mutation p.D55N 0.12 tolerated(0.05) benign(0.105) TCGA-49-4487-01 19 53612605 53612605 C A ZNF415 Missense_Mutation p.M231I 0.09 deleterious(0) benign(0.001) TCGA-49-4487-01 19 55143933 55143933 C A LILRB1 Nonsense_Mutation p.S227* 0.14 TCGA-49-4487-01 19 55177730 55177730 C A LILRB4 Missense_Mutation p.A305D 0.11 deleterious(0) possibly_damaging(0.624) TCGA-49-4487-01 19 55179365 55179365 G A LILRB4 Silent p.Q414Q 0.14 TCGA-49-4487-01 19 55493713 55493713 G T NLRP2 Missense_Mutation p.G216V 0.12 deleterious(0) probably_damaging(0.976) TCGA-49-4487-01 19 55751268 55751268 C A PPP6R1 Nonsense_Mutation p.E497* 0.08 TCGA-49-4487-01 19 5612565 5612565 G T SAFB2 Missense_Mutation p.S207Y 0.16 deleterious(0.01) benign(0.335) TCGA-49-4487-01 19 57327815 57327815 G T PEG3 Silent p.T665T 0.13 TCGA-49-4487-01 19 58551840 58551840 C T ZSCAN1 Silent p.V131V 0.16 TCGA-49-4487-01 19 6495433 6495433 G A TUBB4A Silent p.R359R 0.19 TCGA-49-4487-01 19 9013855 9013855 G T MUC16 Silent p.P12845P 0.18 TCGA-49-4487-01 19 9084723 9084723 G - MUC16 Frame_Shift_Del p.S2365Qfs*9 0.20 TCGA-49-4487-01 1 100950007 100950007 G T CDC14A Missense_Mutation p.E379D 0.07 tolerated(0.12) benign(0.044) TCGA-49-4487-01 1 104116939 104116939 G T AMY2B Missense_Mutation p.V268L 0.04 deleterious(0.01) possibly_damaging(0.769) TCGA-49-4487-01 1 10421840 10421840 C G KIF1B Missense_Mutation p.L1375V 0.06 deleterious(0.01) benign(0.437) TCGA-49-4487-01 1 109445818 109445818 A G GPSM2 Missense_Mutation p.M342V 0.08 tolerated(0.06) benign(0.005) TCGA-49-4487-01 1 114354885 114354885 A C RSBN1 Silent p.A50A 0.08 TCGA-49-4487-01 1 149858839 149858839 G C HIST2H2AC Missense_Mutation p.Q105H 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.908) TCGA-49-4487-01 1 152193051 152193051 C A HRNR Nonsense_Mutation p.E352* 0.17 TCGA-49-4487-01 1 152193307 152193307 C G HRNR Missense_Mutation p.Q266H 0.03 unknown(0) TCGA-49-4487-01 1 152276015 152276015 G A FLG Missense_Mutation p.H3783Y 0.32 unknown(0) TCGA-49-4487-01 1 152286475 152286475 C A FLG Missense_Mutation p.R296I 0.13 possibly_damaging(0.908) TCGA-49-4487-01 1 152325867 152325867 G T FLG2 Missense_Mutation p.H1465Q 0.29 benign(0.023) TCGA-49-4487-01 1 152382335 152382335 G T CRNN Missense_Mutation p.A408E 0.28 tolerated(0.11) benign(0.015) TCGA-49-4487-01 1 153270495 153270495 G T PGLYRP3 Missense_Mutation p.N321K 0.19 tolerated(0.19) benign(0.08) TCGA-49-4487-01 1 157771368 157771368 C A FCRL1 Splice_Site p.X296_splice 0.13 TCGA-49-4487-01 1 158389821 158389821 G T OR10K2 Missense_Mutation p.T279N 0.11 deleterious(0) possibly_damaging(0.697) TCGA-49-4487-01 1 158450078 158450078 G A OR10R2 Silent p.V137V 0.04 TCGA-49-4487-01 1 158450652 158450652 G T OR10R2 Missense_Mutation p.G329C 0.19 tolerated(0.19) benign(0.014) TCGA-49-4487-01 1 158517803 158517803 G T OR6Y1 Silent p.L31L 0.19 TCGA-49-4487-01 1 160313247 160313247 C T NCSTN Silent p.L21L 0.11 TCGA-49-4487-01 1 160604432 160604432 G T SLAMF1 Missense_Mutation p.P224Q 0.21 deleterious(0.02) probably_damaging(0.969) TCGA-49-4487-01 1 17664568 17664568 C T PADI4 Silent p.A148A 0.06 TCGA-49-4487-01 1 179095584 179095584 C A ABL2 Silent p.G205G 0.24 TCGA-49-4487-01 1 179497545 179497545 A T AXDND1 Missense_Mutation p.E898D 0.36 tolerated(0.29) benign(0.009) TCGA-49-4487-01 1 179989875 179989875 G T CEP350 Missense_Mutation p.S989I 0.06 probably_damaging(0.999) TCGA-49-4487-01 1 183909713 183909713 A T COLGALT2 Splice_Site p.X535_splice 0.08 TCGA-49-4487-01 1 19634651 19634651 C A AKR7A2 Splice_Site p.X197_splice 0.13 TCGA-49-4487-01 1 200819110 200819110 A G CAMSAP2 Silent p.E1071E 0.16 TCGA-49-4487-01 1 201182572 201182572 G T IGFN1 Missense_Mutation p.G2851W 0.10 probably_damaging(0.983) TCGA-49-4487-01 1 201757598 201757598 A C NAV1 Missense_Mutation p.S1000R 0.09 deleterious(0) possibly_damaging(0.681) TCGA-49-4487-01 1 215342594 215342594 C G KCNK2 Missense_Mutation p.I176M 0.05 deleterious(0.04) possibly_damaging(0.721) TCGA-49-4487-01 1 218614594 218614594 T A TGFB2 Missense_Mutation p.C407S 0.05 deleterious(0.02) probably_damaging(0.998) TCGA-49-4487-01 1 220287811 220287811 C G IARS2 Missense_Mutation p.I545M 0.16 tolerated(0.08) possibly_damaging(0.588) TCGA-49-4487-01 1 221912759 221912759 T A DUSP10 Missense_Mutation p.T110S 0.32 tolerated_low_confidence(0.85) benign(0.01) TCGA-49-4487-01 1 223178675 223178675 G T DISP1 Silent p.V1312V 0.17 TCGA-49-4487-01 1 223178676 223178676 G T DISP1 Missense_Mutation p.A1313S 0.18 tolerated_low_confidence(0.49) benign(0.031) TCGA-49-4487-01 1 227257519 227257519 C G CDC42BPA Missense_Mutation p.A955P 0.05 tolerated(0.25) possibly_damaging(0.602) TCGA-49-4487-01 1 228294558 228294558 T C MRPL55 Missense_Mutation p.E133G 0.08 tolerated(0.06) benign(0.103) TCGA-49-4487-01 1 228479799 228479799 G T OBSCN Missense_Mutation p.D3943Y 0.19 probably_damaging(0.987) TCGA-49-4487-01 1 229771836 229771836 G T URB2 Silent p.S492S 0.08 TCGA-49-4487-01 1 233225832 233225832 C A PCNXL2 Missense_Mutation p.V1351L 0.25 tolerated(0.15) benign(0.034) TCGA-49-4487-01 1 23382500 23382500 T G KDM1A Missense_Mutation p.F320C 0.05 deleterious(0) probably_damaging(0.998) TCGA-49-4487-01 1 23689281 23689281 C G ZNF436 Missense_Mutation p.E198D 0.04 tolerated(0.26) benign(0.377) TCGA-49-4487-01 1 242042435 242042435 C T EXO1 Silent p.F633F 0.07 TCGA-49-4487-01 1 247920769 247920769 G - OR1C1 Frame_Shift_Del p.Q314Nfs*7 0.25 TCGA-49-4487-01 1 248436663 248436663 C G OR2T33 Missense_Mutation p.A152P 0.16 deleterious(0) probably_damaging(0.974) TCGA-49-4487-01 1 248525228 248525228 G T OR2T4 Missense_Mutation p.D116Y 0.05 deleterious(0) probably_damaging(0.95) TCGA-49-4487-01 1 26349661 26349661 T A EXTL1 Missense_Mutation p.L175Q 0.12 deleterious(0.01) probably_damaging(0.984) TCGA-49-4487-01 1 32138038 32138038 C T COL16A1 Silent p.L1028L 0.13 TCGA-49-4487-01 1 32155342 32155342 C A COL16A1 Missense_Mutation p.R540S 0.17 unknown(0) TCGA-49-4487-01 1 32203823 32203824 AG T BAI2 Frame_Shift_Del p.L917Kfs*8 0.20 TCGA-49-4487-01 1 32745303 32745303 A C LCK Silent p.S332S 0.09 TCGA-49-4487-01 1 39844975 39844975 C A MACF1 Silent p.L2397L 0.07 TCGA-49-4487-01 1 46976740 46976740 A C DMBX1 Missense_Mutation p.Q156P 0.09 tolerated(0.36) benign(0) TCGA-49-4487-01 1 50885323 50885323 T G DMRTA2 Missense_Mutation p.K215Q 0.25 tolerated(0.23) possibly_damaging(0.788) TCGA-49-4487-01 1 66384348 66384348 C T PDE4B Silent p.I37I 0.05 TCGA-49-4487-01 1 75086563 75086563 A G C1orf173 Silent p.S285S 0.08 TCGA-49-4487-01 1 92511124 92511124 G T EPHX4 Missense_Mutation p.G171W 0.13 deleterious(0) probably_damaging(1) TCGA-49-4487-01 1 92511125 92511125 G T EPHX4 Missense_Mutation p.G171V 0.13 deleterious(0) probably_damaging(1) TCGA-49-4487-01 20 13145412 13145412 T G SPTLC3 Silent p.A519A 0.13 TCGA-49-4487-01 20 13756763 13756763 C A ESF1 Missense_Mutation p.R264I 0.13 tolerated_low_confidence(0.05) benign(0.216) TCGA-49-4487-01 20 30496464 30496464 G A TTLL9 Missense_Mutation p.D93N 0.07 tolerated(0.18) benign(0.284) TCGA-49-4487-01 20 3102805 3102805 C A UBOX5 Missense_Mutation p.W160C 0.15 deleterious(0) probably_damaging(0.981) TCGA-49-4487-01 20 31609550 31609550 C G BPIFB2 Missense_Mutation p.A427G 0.18 tolerated(0.16) benign(0.038) TCGA-49-4487-01 20 37005423 37005423 C A LBP 3'UTR 0.12 TCGA-49-4487-01 20 39746848 39746848 G A TOP1 Missense_Mutation p.R621H 0.18 tolerated(0.07) probably_damaging(0.975) TCGA-49-4487-01 20 40161981 40161981 C T CHD6 Missense_Mutation p.G88R 0.07 tolerated_low_confidence(0.16) benign(0.076) TCGA-49-4487-01 20 43142612 43142612 C A SERINC3 Missense_Mutation p.V37L 0.09 tolerated(0.15) benign(0.075) TCGA-49-4487-01 20 43384672 43384672 G A RIMS4 3'UTR 0.38 TCGA-49-4487-01 20 44590736 44590736 C A ZNF335 Missense_Mutation p.R540L 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-49-4487-01 20 60864347 60864347 C T OSBPL2 Silent p.L404L 0.12 TCGA-49-4487-01 20 61167750 61167750 C A C20orf166 Missense_Mutation p.P74T 0.17 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-49-4487-01 20 62592741 62592741 T G ZNF512B Missense_Mutation p.K783T 0.06 deleterious(0) probably_damaging(0.998) TCGA-49-4487-01 21 10998277 10998277 C T TPTE RNA 0.04 TCGA-49-4487-01 21 27066137 27066137 C T JAM2 Missense_Mutation p.A104V 0.12 deleterious(0) probably_damaging(0.991) TCGA-49-4487-01 21 31587816 31587816 G T CLDN8 Missense_Mutation p.A143D 0.23 tolerated(0.64) benign(0.122) TCGA-49-4487-01 21 31933420 31933420 A G KRTAP19-7 Silent p.Y63Y 0.05 TCGA-49-4487-01 21 32185435 32185435 T A KRTAP8-1 Missense_Mutation p.Y35F 0.21 tolerated_low_confidence(0.15) benign(0.04) TCGA-49-4487-01 21 35183319 35183319 G C ITSN1 Missense_Mutation p.G787A 0.26 deleterious(0) probably_damaging(0.999) TCGA-49-4487-01 21 39772482 39772497 GGGTGTTTTCGTACCT - ERG Splice_Site p.X255_splice 0.11 TCGA-49-4487-01 21 40550484 40550484 G A PSMG1 Silent p.G182G 0.10 TCGA-49-4487-01 21 42752078 42752078 G - MX2 Frame_Shift_Del 0.12 TCGA-49-4487-01 21 44151935 44151935 G A PDE9A Silent p.L106L 0.11 TCGA-49-4487-01 21 47571634 47571634 C A FTCD Missense_Mutation p.W158C 0.22 deleterious(0) probably_damaging(0.999) TCGA-49-4487-01 22 18347536 18347536 G C MICAL3 Intron 0.07 TCGA-49-4487-01 22 26423257 26423257 G T MYO18B Silent p.V2439V 0.13 TCGA-49-4487-01 2 108875201 108875201 T A SULT1C3 Missense_Mutation p.S180T 0.06 deleterious(0) probably_damaging(0.927) TCGA-49-4487-01 2 109381205 109381205 G T RANBP2 Missense_Mutation p.V1404F 0.11 tolerated(0.32) benign(0.386) TCGA-49-4487-01 2 111881467 111881467 G C BCL2L11 Missense_Mutation p.G49R 0.10 deleterious_low_confidence(0.02) benign(0.005) TCGA-49-4487-01 2 132289308 132289308 C A CCDC74A Missense_Mutation p.L206M 0.08 deleterious(0.01) probably_damaging(0.991) TCGA-49-4487-01 2 141299393 141299393 G C LRP1B Missense_Mutation p.H2448D 0.08 benign(0.227) TCGA-49-4487-01 2 145157401 145157401 G - ZEB2 Frame_Shift_Del p.T452Pfs*2 0.11 TCGA-49-4487-01 2 163004007 163004007 T G GCG Missense_Mutation p.Q37P 0.07 tolerated(0.26) benign(0.392) TCGA-49-4487-01 2 163004009 163004009 G C GCG Silent p.S36S 0.07 TCGA-49-4487-01 2 176981700 176981700 G T HOXD10 Nonsense_Mutation p.G47* 0.10 TCGA-49-4487-01 2 179720986 179720986 G T CCDC141 Missense_Mutation p.Q955K 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-49-4487-01 2 190532188 190532188 C A ASNSD1 Silent p.R444R 0.05 TCGA-49-4487-01 2 198274523 198274523 C T SF3B1 Missense_Mutation p.R292K 0.07 tolerated(0.05) possibly_damaging(0.768) TCGA-49-4487-01 2 198950220 198950220 G - PLCL1 Frame_Shift_Del p.W660* 0.13 TCGA-49-4487-01 2 202264117 202264117 C T TRAK2 Missense_Mutation p.G155R 0.12 deleterious(0.04) probably_damaging(0.953) TCGA-49-4487-01 2 204305195 204305195 G A RAPH1 Silent p.P906P 0.11 TCGA-49-4487-01 2 206994878 206994878 G A NDUFS1 Silent p.L562L 0.09 TCGA-49-4487-01 2 207435496 207435496 C G ADAM23 Nonsense_Mutation p.Y509* 0.13 TCGA-49-4487-01 2 220107620 220107620 T A GLB1L Missense_Mutation p.H87L 0.08 deleterious(0) probably_damaging(1) TCGA-49-4487-01 2 220366738 220366738 T - GMPPA Frame_Shift_Del p.F137Sfs*55 0.10 TCGA-49-4487-01 2 234894455 234894455 T G TRPM8 Missense_Mutation p.I962S 0.06 deleterious(0) possibly_damaging(0.825) TCGA-49-4487-01 2 238245036 238245036 G T COL6A3 Missense_Mutation p.P2903T 0.06 unknown(0) TCGA-49-4487-01 2 26663341 26663341 A G DRC1 Silent p.E328E 0.09 TCGA-49-4487-01 2 33783856 33783856 C A RASGRP3 Missense_Mutation p.A608D 0.08 deleterious(0.01) benign(0.218) TCGA-49-4487-01 2 38536571 38536571 C G ATL2 Missense_Mutation p.E341Q 0.05 tolerated(0.1) benign(0.173) TCGA-49-4487-01 2 43819156 43819156 C A THADA Missense_Mutation p.A36S 0.33 deleterious(0.01) probably_damaging(0.979) TCGA-49-4487-01 2 44065079 44065079 G T ABCG5 Silent p.P53P 0.07 TCGA-49-4487-01 2 69271872 69271872 A T ANTXR1 Splice_Site p.X75_splice 0.07 TCGA-49-4487-01 2 75425737 75425737 G C TACR1 Missense_Mutation p.H108Q 0.16 tolerated(0.96) benign(0.075) TCGA-49-4487-01 2 8919884 8919884 G A KIDINS220 Nonsense_Mutation p.Q764* 0.17 TCGA-49-4487-01 2 96259801 96259801 G C TRIM43 Missense_Mutation p.Q10H 0.11 deleterious(0.02) probably_damaging(0.982) TCGA-49-4487-01 3 118621429 118621429 C A IGSF11 Nonsense_Mutation p.E412* 0.10 TCGA-49-4487-01 3 124739887 124739887 A T HEG1 Missense_Mutation p.V334E 0.17 deleterious(0) benign(0.045) TCGA-49-4487-01 3 132218620 132218620 C T DNAJC13 Missense_Mutation p.R1462C 0.04 tolerated(0.07) benign(0.258) TCGA-49-4487-01 3 134920438 134920438 G T EPHB1 Silent p.L751L 0.17 TCGA-49-4487-01 3 147131311 147131311 T A ZIC1 Silent p.S439S 0.15 TCGA-49-4487-01 3 148596504 148596504 C A CPA3 Missense_Mutation p.T148N 0.18 deleterious(0) probably_damaging(0.996) TCGA-49-4487-01 3 164735354 164735354 C A SI Silent p.V1247V 0.12 TCGA-49-4487-01 3 179051750 179051750 A C ZNF639 Missense_Mutation p.H333P 0.10 deleterious(0.03) probably_damaging(0.991) TCGA-49-4487-01 3 183967486 183967486 G A ECE2 Missense_Mutation p.A2T 0.12 deleterious_low_confidence(0) benign(0.089) TCGA-49-4487-01 3 184043360 184043360 C G EIF4G1 Missense_Mutation p.I1025M 0.13 tolerated(0.23) benign(0.243) TCGA-49-4487-01 3 196388616 196388616 A G NRROS 3'UTR 0.18 TCGA-49-4487-01 3 25611292 25611292 G A RARB Silent p.K164K 0.07 TCGA-49-4487-01 3 27204002 27204002 C A NEK10 Missense_Mutation p.W987L 0.06 tolerated(0.42) benign(0.12) TCGA-49-4487-01 3 38182678 38182678 C T MYD88 Silent p.F285F 0.18 TCGA-49-4487-01 3 39374724 39374724 C A CCR8 Missense_Mutation p.A301D 0.10 deleterious(0) probably_damaging(0.988) TCGA-49-4487-01 3 46009082 46009082 G T FYCO1 Missense_Mutation p.Q582K 0.09 tolerated(0.85) benign(0.033) TCGA-49-4487-01 3 47162939 47162939 T A SETD2 Nonsense_Mutation p.R1063* 0.12 TCGA-49-4487-01 3 49866942 49866942 C A TRAIP Splice_Site p.X413_splice 0.07 TCGA-49-4487-01 3 52836352 52836352 C T ITIH3 Silent p.G462G 0.08 TCGA-49-4487-01 4 100131598 100131598 A G ADH6 Silent p.S108S 0.08 TCGA-49-4487-01 4 100532599 100532599 C T MTTP Missense_Mutation p.H660Y 0.08 tolerated(0.09) benign(0.014) TCGA-49-4487-01 4 102942739 102942739 A G BANK1 Silent p.T425T 0.14 TCGA-49-4487-01 4 104511146 104511146 C T TACR3 Missense_Mutation p.R364Q 0.17 deleterious(0) possibly_damaging(0.908) TCGA-49-4487-01 4 126411064 126411064 G C FAT4 Missense_Mutation p.D4363H 0.09 possibly_damaging(0.766) TCGA-49-4487-01 4 177649043 177649043 C T VEGFC Silent p.A147A 0.18 TCGA-49-4487-01 4 187522452 187522452 C T FAT1 Missense_Mutation p.A3871T 0.17 probably_damaging(0.981) TCGA-49-4487-01 4 3429845 3429845 A T RGS12 Silent p.P1120P 0.05 TCGA-49-4487-01 4 36179481 36179481 C T ARAP2 Missense_Mutation p.G609R 0.10 deleterious(0.03) possibly_damaging(0.823) TCGA-49-4487-01 4 4864535 4864535 C A MSX1 Missense_Mutation p.Q193K 0.09 deleterious(0) possibly_damaging(0.655) TCGA-49-4487-01 4 5333033 5333033 T A STK32B Missense_Mutation p.V116E 0.09 deleterious(0) probably_damaging(0.989) TCGA-49-4487-01 4 56230429 56230429 G C SRD5A3 Missense_Mutation p.G185R 0.10 tolerated(0.41) benign(0.024) TCGA-49-4487-01 4 56874539 56874539 C T CEP135 Missense_Mutation p.S776L 0.08 tolerated(0.14) benign(0.005) TCGA-49-4487-01 4 619540 619540 C A PDE6B Missense_Mutation p.P42Q 0.10 tolerated(0.5) benign(0.024) TCGA-49-4487-01 4 62775293 62775293 A G LPHN3 Missense_Mutation p.T567A 0.12 tolerated(0.07) benign(0.007) TCGA-49-4487-01 4 70802196 70802196 G A CSN1S1 Missense_Mutation p.R51K 0.08 tolerated(0.33) benign(0.013) TCGA-49-4487-01 4 77057381 77057381 C A NUP54 Silent p.P160P 0.07 TCGA-49-4487-01 4 85731418 85731418 G C WDFY3 Missense_Mutation p.S656C 0.09 deleterious(0) probably_damaging(0.996) TCGA-49-4487-01 4 90743475 90743475 T C SNCA Silent p.A76A 0.05 TCGA-49-4487-01 4 90743476 90743476 G C SNCA Missense_Mutation p.A76G 0.05 deleterious(0.01) probably_damaging(0.989) TCGA-49-4487-01 5 135276978 135276978 C T FBXL21 RNA 0.07 TCGA-49-4487-01 5 136969802 136969802 G A KLHL3 Silent p.S458S 0.17 TCGA-49-4487-01 5 140215061 140215061 C G PCDHA7 Missense_Mutation p.P365A 0.04 tolerated_low_confidence(0.46) benign(0.014) TCGA-49-4487-01 5 140482066 140482066 G T PCDHB3 Missense_Mutation p.E611D 0.06 tolerated_low_confidence(0.17) benign(0.193) TCGA-49-4487-01 5 140559195 140559195 C A PCDHB8 Missense_Mutation p.A527E 0.06 tolerated_low_confidence(0.12) benign(0.003) TCGA-49-4487-01 5 140580991 140580991 C A PCDHB11 Silent p.R548R 0.08 TCGA-49-4487-01 5 140683346 140683346 G A SLC25A2 Silent p.P29P 0.12 TCGA-49-4487-01 5 147793698 147793698 G - FBXO38 Splice_Site p.X365_splice 0.10 TCGA-49-4487-01 5 172755225 172755225 G A STC2 5'UTR 0.07 TCGA-49-4487-01 5 176022636 176022636 C A CDHR2 Missense_Mutation p.S1299Y 0.22 deleterious(0) possibly_damaging(0.505) TCGA-49-4487-01 5 177020659 177020659 G A TMED9 Silent p.L98L 0.08 TCGA-49-4487-01 5 177468724 177468724 C T FAM153C Missense_Mutation p.P55L 0.09 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-49-4487-01 5 33649781 33649781 C - ADAMTS12 Frame_Shift_Del p.E406Kfs*25 0.10 TCGA-49-4487-01 5 35910605 35910605 C A CAPSL Missense_Mutation p.D60Y 0.09 deleterious(0) probably_damaging(0.91) TCGA-49-4487-01 5 466932 466932 A T EXOC3 Silent p.P719P 0.29 TCGA-49-4487-01 5 89815303 89815303 T A LYSMD3 Splice_Site p.X86_splice 0.09 TCGA-49-4487-01 5 94922387 94922387 A G ARSK Missense_Mutation p.N274S 0.11 tolerated(0.28) benign(0.021) TCGA-49-4487-01 6 10764813 10764813 G T MAK Silent p.R582R 0.25 TCGA-49-4487-01 6 114378474 114378474 G C HS3ST5 Missense_Mutation p.P330A 0.08 tolerated(0.26) benign(0.039) TCGA-49-4487-01 6 117249929 117249929 T C RFX6 Silent p.Y802Y 0.10 TCGA-49-4487-01 6 125233437 125233437 G C RP11-510H23.1 RNA 0.12 TCGA-49-4487-01 6 130762164 130762164 C T TMEM200A Silent p.S199S 0.16 TCGA-49-4487-01 6 136594278 136594278 A T BCLAF1 Missense_Mutation p.S634T 0.03 tolerated(0.52) benign(0.135) TCGA-49-4487-01 6 160240112 160240112 C A PNLDC1 Silent p.L453L 0.12 TCGA-49-4487-01 6 16145361 16145361 C G MYLIP Nonsense_Mutation p.S354* 0.15 TCGA-49-4487-01 6 24582479 24582479 G C KIAA0319 Missense_Mutation p.Q397E 0.05 tolerated(0.18) benign(0.193) TCGA-49-4487-01 6 30124730 30124730 A G TRIM10 Missense_Mutation p.M294T 0.19 deleterious(0) benign(0.08) TCGA-49-4487-01 6 35280244 35280244 G T DEF6 Missense_Mutation p.V197L 0.19 tolerated(0.44) benign(0.054) TCGA-49-4487-01 6 41897940 41897940 G T BYSL Nonsense_Mutation p.E168* 0.10 TCGA-49-4487-01 6 47847511 47847511 G T PTCHD4 Missense_Mutation p.P357T 0.19 tolerated(0.07) probably_damaging(0.997) TCGA-49-4487-01 6 49698963 49698963 C A CRISP3 Missense_Mutation p.G198C 0.13 deleterious(0) probably_damaging(1) TCGA-49-4487-01 6 52268474 52268474 C G PAQR8 Missense_Mutation p.Q155E 0.05 deleterious(0) probably_damaging(0.998) TCGA-49-4487-01 6 56468675 56468675 C A DST Intron 0.14 TCGA-49-4487-01 6 56765373 56765373 G T DST Missense_Mutation p.A88D 0.18 deleterious_low_confidence(0.01) benign(0.017) TCGA-49-4487-01 6 74123487 74123487 T C DDX43 Missense_Mutation p.V492A 0.15 deleterious(0.01) benign(0.437) TCGA-49-4487-01 6 97063749 97063749 C T FHL5 3'UTR 0.25 TCGA-49-4487-01 7 102608486 102608486 T A FBXL13 Missense_Mutation p.N192Y 0.21 deleterious(0.01) benign(0.281) TCGA-49-4487-01 7 103205757 103205757 C T RELN Silent p.K1726K 0.09 TCGA-49-4487-01 7 103338439 103338439 A T RELN Missense_Mutation p.V335E 0.08 tolerated_low_confidence(0.75) benign(0) TCGA-49-4487-01 7 107572810 107572810 G T LAMB1 Missense_Mutation p.P1401T 0.10 tolerated(0.08) benign(0.089) TCGA-49-4487-01 7 114304340 114304340 G C FOXP2 Missense_Mutation p.E643Q 0.09 tolerated(0.05) benign(0.016) TCGA-49-4487-01 7 117432096 117432096 C A CTTNBP2 Missense_Mutation p.G385V 0.08 deleterious(0.01) probably_damaging(0.959) TCGA-49-4487-01 7 117432097 117432097 C A CTTNBP2 Nonsense_Mutation p.G385* 0.08 TCGA-49-4487-01 7 121651876 121651876 C G PTPRZ1 Missense_Mutation p.P926A 0.11 tolerated_low_confidence(0.95) benign(0.001) TCGA-49-4487-01 7 130027667 130027667 C G CPA1 Missense_Mutation p.Q359E 0.06 tolerated(0.39) benign(0.012) TCGA-49-4487-01 7 132192544 132192544 A T PLXNA4 Missense_Mutation p.S303R 0.25 tolerated(0.53) benign(0.004) TCGA-49-4487-01 7 133682312 133682312 G C EXOC4 Missense_Mutation p.Q758H 0.07 deleterious(0.03) benign(0.005) TCGA-49-4487-01 7 141408876 141408876 C A WEE2 Silent p.P106P 0.13 TCGA-49-4487-01 7 142458475 142458475 A G PRSS1 Missense_Mutation p.Y37C 0.10 deleterious(0) probably_damaging(0.998) TCGA-49-4487-01 7 143807463 143807463 C G OR2A2 Missense_Mutation p.S263C 0.13 deleterious(0) probably_damaging(0.988) TCGA-49-4487-01 7 154684566 154684566 C T DPP6 3'UTR 0.07 TCGA-49-4487-01 7 158334246 158334246 G A PTPRN2 Intron 0.05 TCGA-49-4487-01 7 17375401 17375401 G A AHR Missense_Mutation p.R384K 0.18 deleterious(0.05) probably_damaging(0.984) TCGA-49-4487-01 7 23221741 23221741 C T NUPL2 Missense_Mutation p.R13C 0.17 deleterious(0) possibly_damaging(0.852) TCGA-49-4487-01 7 23299726 23299726 C T GPNMB Silent p.I223I 0.10 TCGA-49-4487-01 7 24874132 24874132 C A OSBPL3 Silent p.A573A 0.09 TCGA-49-4487-01 7 43508595 43508595 T A HECW1 Missense_Mutation p.F997Y 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-49-4487-01 7 43927062 43927062 C A URGCP Missense_Mutation p.A22S 0.12 tolerated_low_confidence(0.16) benign(0.079) TCGA-49-4487-01 7 45930284 45930284 G C IGFBP1 Missense_Mutation p.A163P 0.20 deleterious(0.01) possibly_damaging(0.899) TCGA-49-4487-01 7 5340083 5340083 G A SLC29A4 Missense_Mutation p.G414S 0.14 tolerated(0.07) possibly_damaging(0.72) TCGA-49-4487-01 7 57188235 57188235 G T ZNF479 Missense_Mutation p.P296H 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-49-4487-01 7 71036294 71036294 G T WBSCR17 Silent p.S329S 0.07 TCGA-49-4487-01 7 82538271 82538271 C A PCLO Missense_Mutation p.L4453F 0.14 unknown(0) TCGA-49-4487-01 7 82584133 82584133 C T PCLO Missense_Mutation p.G2046S 0.06 unknown(0) TCGA-49-4487-01 7 82764398 82764398 C A PCLO Missense_Mutation p.R823L 0.11 unknown(0) TCGA-49-4487-01 7 87837825 87837825 A G SRI Silent p.D189D 0.09 TCGA-49-4487-01 7 88847491 88847491 C G ZNF804B Missense_Mutation p.T44R 0.11 deleterious(0) possibly_damaging(0.753) TCGA-49-4487-01 8 100479783 100479783 G A VPS13B Missense_Mutation p.G1196E 0.10 deleterious(0) probably_damaging(0.964) TCGA-49-4487-01 8 10467736 10467736 T A RP1L1 Missense_Mutation p.Q1291L 0.10 benign(0.064) TCGA-49-4487-01 8 106811100 106811100 C A ZFPM2 Missense_Mutation p.S296R 0.06 tolerated(1) benign(0.18) TCGA-49-4487-01 8 113348905 113348905 G T CSMD3 Missense_Mutation p.P2332Q 0.08 deleterious(0) probably_damaging(0.98) TCGA-49-4487-01 8 144464814 144464814 G T RHPN1 Missense_Mutation p.W669L 0.12 deleterious_low_confidence(0.03) possibly_damaging(0.504) TCGA-49-4487-01 8 2088653 2088653 A T MYOM2 Nonsense_Mutation p.K1270* 0.11 TCGA-49-4487-01 8 30705192 30705192 C T TEX15 Missense_Mutation p.E448K 0.12 tolerated(0.42) benign(0.229) TCGA-49-4487-01 8 38110567 38110567 C G DDHD2 Missense_Mutation p.P605A 0.09 tolerated(0.6) possibly_damaging(0.79) TCGA-49-4487-01 8 59409192 59409192 C A CYP7A1 Silent p.A293A 0.09 TCGA-49-4487-01 8 68992817 68992817 A G PREX2 Silent p.L594L 0.10 TCGA-49-4487-01 9 100893276 100893276 G A CORO2A Silent p.F277F 0.10 TCGA-49-4487-01 9 103213257 103213257 G T MSANTD3 3'UTR 0.06 TCGA-49-4487-01 9 112166750 112166750 C A PTPN3 Missense_Mutation p.G644V 0.19 deleterious(0) probably_damaging(0.96) TCGA-49-4487-01 9 112900009 112900009 G A PALM2-AKAP2 Missense_Mutation p.D729N 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-49-4487-01 9 113194251 113194251 C A SVEP1 Missense_Mutation p.G1766V 0.18 probably_damaging(1) TCGA-49-4487-01 9 114289741 114289741 G T ZNF483 Silent p.S22S 0.07 TCGA-49-4487-01 9 116060272 116060272 G T RNF183 Missense_Mutation p.L65M 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-49-4487-01 9 119858343 119858343 C G ASTN2 Missense_Mutation p.R368P 0.07 deleterious_low_confidence(0.01) unknown(0) TCGA-49-4487-01 9 122075514 122075514 C A BRINP1 Missense_Mutation p.W40C 0.23 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-49-4487-01 9 12693928 12693928 G C TYRP1 5'UTR 0.08 TCGA-49-4487-01 9 131019541 131019541 G A GOLGA2 Silent p.L938L 0.11 TCGA-49-4487-01 9 131050954 131050954 A G SWI5 Missense_Mutation p.K223E 0.08 deleterious(0) probably_damaging(0.973) TCGA-49-4487-01 9 131246279 131246279 G T ODF2 Missense_Mutation p.Q350H 0.10 deleterious(0.05) benign(0.351) TCGA-49-4487-01 9 131735483 131735483 T C NUP188 Silent p.S386S 0.06 TCGA-49-4487-01 9 134073026 134073026 A T NUP214 Missense_Mutation p.K1382M 0.18 probably_damaging(0.979) TCGA-49-4487-01 9 135942538 135942538 A T CEL Missense_Mutation p.T284S 0.19 tolerated(0.18) benign(0.339) TCGA-49-4487-01 9 137716553 137716553 G T COL5A1 Silent p.V1602V 0.13 TCGA-49-4487-01 9 137716554 137716554 G T COL5A1 Missense_Mutation p.D1603Y 0.13 unknown(0) TCGA-49-4487-01 9 139360558 139360558 C A SEC16A Missense_Mutation p.A1387S 0.15 tolerated(0.27) benign(0.087) TCGA-49-4487-01 9 32635604 32635604 C A TAF1L 5'UTR 0.12 TCGA-49-4487-01 9 43625471 43625471 C T SPATA31A6 Missense_Mutation p.M1072I 0.07 tolerated(0.38) benign(0.026) TCGA-49-4487-01 9 88967669 88967669 C T ZCCHC6 Missense_Mutation p.R149K 0.08 tolerated_low_confidence(0.08) benign(0.02) TCGA-49-4487-01 9 88967678 88967678 C T ZCCHC6 Missense_Mutation p.R146K 0.09 tolerated_low_confidence(0.23) possibly_damaging(0.515) TCGA-49-4487-01 9 94985761 94985761 G A IARS Silent p.N1140N 0.07 TCGA-49-4487-01 X 101096645 101096645 C A NXF5 Splice_Site p.X80_splice 0.17 TCGA-49-4487-01 X 105168969 105168969 A C NRK Silent p.T1087T 0.16 TCGA-49-4487-01 X 108628439 108628439 G T GUCY2F Missense_Mutation p.A1010D 0.20 deleterious(0) probably_damaging(0.999) TCGA-49-4487-01 X 11136729 11136729 C T HCCS Silent p.A170A 0.14 TCGA-49-4487-01 X 129040189 129040189 G T UTP14A Translation_Start_Site p.M1? 0.13 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-49-4487-01 X 138680577 138680577 C A MCF2 Missense_Mutation p.Q715H 0.16 deleterious(0.01) benign(0.181) TCGA-49-4487-01 X 18234682 18234682 C A BEND2 Missense_Mutation p.G66V 0.10 deleterious(0) possibly_damaging(0.827) TCGA-49-4487-01 X 3240552 3240552 C A MXRA5 Missense_Mutation p.K1058N 0.07 tolerated(0.2) benign(0.084) TCGA-49-4487-01 X 37850387 37850387 G A CXorf27 Missense_Mutation p.E99K 0.15 tolerated(0.19) benign(0.192) TCGA-49-4487-01 X 46949284 46949284 T G RGN Missense_Mutation p.I152M 0.12 deleterious(0) probably_damaging(0.954) TCGA-49-4487-01 X 54776442 54776442 C A ITIH6 Missense_Mutation p.K1276N 0.14 tolerated(0.1) probably_damaging(0.996) TCGA-49-4487-01 X 91873602 91873602 C A PCDH11X Missense_Mutation p.P1236Q 0.14 deleterious_low_confidence(0.01) benign(0.282) TCGA-49-4487-01 X 99663320 99663320 C G PCDH19 Silent p.L92L 0.23 TCGA-49-4488-01 10 118202626 118202626 C A PNLIPRP3 Silent p.I88I 0.65 TCGA-49-4488-01 10 17146427 17146427 G A CUBN Missense_Mutation p.P470S 0.31 tolerated(0.05) benign(0.178) TCGA-49-4488-01 10 18931430 18931430 A T RP11-139J15.7 Missense_Mutation p.L84I 0.32 deleterious(0.01) possibly_damaging(0.801) TCGA-49-4488-01 10 34400396 34400396 T A PARD3 Missense_Mutation p.R1258W 0.68 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-49-4488-01 10 37433954 37433954 G A ANKRD30A Silent p.E419E 0.64 TCGA-49-4488-01 10 45602096 45602096 C T RSU1P2 RNA 0.62 TCGA-49-4488-01 10 50363897 50363897 G C C10orf128 3'UTR 0.80 TCGA-49-4488-01 10 5040858 5040859 GG - AKR1C2 Frame_Shift_Del p.L177Qfs*40 0.14 TCGA-49-4488-01 10 93393 93393 C A TUBB8 Silent p.A313A 0.57 TCGA-49-4488-01 10 97763952 97763952 A T CC2D2B 5'UTR 0.60 TCGA-49-4488-01 11 104871047 104871047 C T CASP5 Missense_Mutation p.R311H 0.23 tolerated(0.07) benign(0.018) TCGA-49-4488-01 11 117693433 117693433 C T FXYD2 Splice_Site p.X9_splice 0.44 TCGA-49-4488-01 11 125324086 125324086 G T FEZ1 Silent p.I320I 0.54 TCGA-49-4488-01 11 125647266 125647266 G A PATE2 3'UTR 0.11 TCGA-49-4488-01 11 15243094 15243094 T A INSC Silent p.A344A 0.51 TCGA-49-4488-01 11 18731092 18731092 C A IGSF22 Missense_Mutation p.W947L 0.47 deleterious(0.01) possibly_damaging(0.543) TCGA-49-4488-01 11 22387098 22387098 T C SLC17A6 Missense_Mutation p.F252L 0.06 tolerated(0.17) benign(0.006) TCGA-49-4488-01 11 27078781 27078781 G A BBOX1 Missense_Mutation p.E85K 0.17 tolerated(0.24) benign(0.003) TCGA-49-4488-01 11 31287134 31287134 C A DCDC1 Missense_Mutation p.C325F 0.39 deleterious(0) probably_damaging(0.958) TCGA-49-4488-01 11 3249776 3249776 A C MRGPRE Missense_Mutation p.L84R 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-49-4488-01 11 32663549 32663549 T C CCDC73 Missense_Mutation p.H340R 0.19 deleterious(0) probably_damaging(0.992) TCGA-49-4488-01 11 36594888 36594888 A C RAG1 Missense_Mutation p.S12R 0.07 tolerated_low_confidence(0.29) benign(0.021) TCGA-49-4488-01 11 45671461 45671461 C - CHST1 Frame_Shift_Del p.G338Afs*57 0.32 TCGA-49-4488-01 11 4661295 4661295 C A OR51D1 Missense_Mutation p.P92H 0.41 deleterious(0) probably_damaging(1) TCGA-49-4488-01 11 55322373 55322373 G A OR4C15 Silent p.L197L 0.47 TCGA-49-4488-01 11 55861237 55861237 G T OR8I2 Missense_Mutation p.G152C 0.13 deleterious(0.01) probably_damaging(0.974) TCGA-49-4488-01 11 56043390 56043390 A T OR5T1 Missense_Mutation p.K92N 0.16 tolerated(0.23) benign(0.014) TCGA-49-4488-01 11 57575995 57575995 G T CTNND1 Missense_Mutation p.R742L 0.61 deleterious(0.04) benign(0.139) TCGA-49-4488-01 11 58385171 58385171 G T ZFP91 Nonsense_Mutation p.G569* 0.56 TCGA-49-4488-01 11 6291448 6291448 G T CCKBR Silent p.T178T 0.55 TCGA-49-4488-01 11 66613459 66613459 T C RCE1 Missense_Mutation p.F295L 0.31 deleterious(0.01) probably_damaging(0.985) TCGA-49-4488-01 11 73008427 73008427 G A P2RY6 Silent p.P288P 0.09 TCGA-49-4488-01 11 7441837 7441837 C - SYT9 Frame_Shift_Del p.I481Lfs*15 0.30 TCGA-49-4488-01 11 74904298 74904298 C T SLCO2B1 Missense_Mutation p.P371S 0.66 deleterious(0.02) probably_damaging(1) TCGA-49-4488-01 11 76944186 76944186 C T GDPD4 Missense_Mutation p.V425I 0.53 tolerated(0.11) benign(0.005) TCGA-49-4488-01 12 10168005 10168005 G T CLEC12B Missense_Mutation p.K188N 0.12 tolerated(0.12) possibly_damaging(0.838) TCGA-49-4488-01 12 109921467 109921467 G T UBE3B Missense_Mutation p.Q37H 0.56 deleterious(0) probably_damaging(0.998) TCGA-49-4488-01 12 110236695 110236695 A G TRPV4 Silent p.A292A 0.47 TCGA-49-4488-01 12 114374839 114374839 C T RBM19 Missense_Mutation p.E681K 0.08 tolerated(0.65) benign(0.003) TCGA-49-4488-01 12 117013775 117013775 C G MAP1LC3B2 Missense_Mutation p.R10G 0.17 deleterious(0.03) benign(0.014) TCGA-49-4488-01 12 117907527 117907527 T A KSR2 Missense_Mutation p.E929V 0.57 deleterious(0) probably_damaging(0.921) TCGA-49-4488-01 12 12340001 12340001 C T LRP6 Missense_Mutation p.E234K 0.41 tolerated(0.51) benign(0.003) TCGA-49-4488-01 12 130926753 130926753 G T RIMBP2 Missense_Mutation p.R365S 0.59 deleterious(0) probably_damaging(0.999) TCGA-49-4488-01 12 132529882 132529882 A G EP400 Missense_Mutation p.K2268R 0.16 unknown(0) TCGA-49-4488-01 12 22214339 22214339 G T CMAS Missense_Mutation p.V305L 0.23 tolerated(0.66) benign(0) TCGA-49-4488-01 12 32735020 32735020 G A FGD4 Silent p.Q73Q 0.34 TCGA-49-4488-01 12 78443851 78443851 C A NAV3 Missense_Mutation p.S701Y 0.57 deleterious(0) probably_damaging(0.999) TCGA-49-4488-01 12 78515872 78515872 C A NAV3 Missense_Mutation p.A1301D 0.42 tolerated(0.07) possibly_damaging(0.735) TCGA-49-4488-01 12 88381709 88381709 T A C12orf50 Silent p.L245L 0.53 TCGA-49-4488-01 12 89918307 89918307 C G GALNT4 Missense_Mutation p.W7S 0.43 tolerated_low_confidence(0.05) possibly_damaging(0.462) TCGA-49-4488-01 12 96361533 96361533 G C AMDHD1 Splice_Site p.X398_splice 0.46 TCGA-49-4488-01 13 101748033 101748033 T C NALCN Splice_Site p.X1055_splice 0.14 TCGA-49-4488-01 13 106119472 106119472 A T DAOA Missense_Mutation p.N39Y 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.844) TCGA-49-4488-01 13 109707460 109707460 G A MYO16 Missense_Mutation p.A1017T 0.21 tolerated(0.06) possibly_damaging(0.859) TCGA-49-4488-01 13 21166539 21166539 G C IFT88 Missense_Mutation p.D141H 0.07 deleterious(0) benign(0.184) TCGA-49-4488-01 13 39586310 39586310 C A PROSER1 Silent p.P874P 0.11 TCGA-49-4488-01 13 60485886 60485886 C T DIAPH3 Missense_Mutation p.E784K 0.41 deleterious(0) probably_damaging(0.998) TCGA-49-4488-01 13 92797141 92797141 G T GPC5 Missense_Mutation p.G487V 0.30 deleterious(0) probably_damaging(0.976) TCGA-49-4488-01 14 101004814 101004814 T C BEGAIN Missense_Mutation p.D425G 0.24 deleterious(0) probably_damaging(0.999) TCGA-49-4488-01 14 106805666 106805666 G T IGHV4-31 5'UTR 0.39 TCGA-49-4488-01 14 106963337 106963337 C A IGHV1-45 Missense_Mutation p.L10F 0.36 deleterious(0.03) benign(0.397) TCGA-49-4488-01 14 22363184 22363184 G T TRAV8-4 Silent p.A105A 0.38 TCGA-49-4488-01 14 23944436 23944436 G A NGDN Silent p.L67L 0.05 TCGA-49-4488-01 14 38273933 38273933 G T TTC6 Missense_Mutation p.D1360Y 0.52 deleterious(0.01) probably_damaging(0.983) TCGA-49-4488-01 14 55817595 55817595 C T FBXO34 Nonsense_Mutation p.Q163* 0.11 TCGA-49-4488-01 14 61917613 61917613 C T PRKCH Silent p.N252N 0.26 TCGA-49-4488-01 14 75388074 75388074 G T RPS6KL1 Silent p.I57I 0.18 TCGA-49-4488-01 14 75515141 75515141 C T MLH3 Silent p.L406L 0.24 TCGA-49-4488-01 14 81534648 81534648 A G TSHR Missense_Mutation p.Y98C 0.22 tolerated(0.16) probably_damaging(0.928) TCGA-49-4488-01 14 93709365 93709365 C A BTBD7 Missense_Mutation p.D885Y 0.10 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-49-4488-01 14 94139777 94139777 T A UNC79 Missense_Mutation p.D2101E 0.15 deleterious(0.01) probably_damaging(0.995) TCGA-49-4488-01 14 96157078 96157078 A C TCL1B Missense_Mutation p.E56D 0.03 tolerated(0.23) benign(0.085) TCGA-49-4488-01 15 48435217 48435217 C A MYEF2 Missense_Mutation p.C564F 0.55 tolerated(0.06) possibly_damaging(0.479) TCGA-49-4488-01 15 75499431 75499431 G T C15orf39 Missense_Mutation p.A348S 0.54 tolerated(0.09) possibly_damaging(0.567) TCGA-49-4488-01 15 82336286 82336286 C A MEX3B Missense_Mutation p.A309S 0.50 tolerated(0.9) benign(0.004) TCGA-49-4488-01 16 1537678 1537678 G T PTX4 Silent p.A140A 0.51 TCGA-49-4488-01 16 20043958 20043958 A T GPR139 Missense_Mutation p.L54Q 0.59 deleterious(0) probably_damaging(0.999) TCGA-49-4488-01 16 20429402 20429402 C A ACSM5 Missense_Mutation p.P76T 0.50 deleterious(0.02) possibly_damaging(0.552) TCGA-49-4488-01 16 27585278 27585278 G T KIAA0556 Splice_Site p.X21_splice 0.12 TCGA-49-4488-01 16 49669627 49669627 G T ZNF423 Missense_Mutation p.L1146I 0.38 tolerated_low_confidence(0.19) benign(0.003) TCGA-49-4488-01 16 57111855 57111855 G T NLRC5 Missense_Mutation p.M1668I 0.30 tolerated(0.48) benign(0.01) TCGA-49-4488-01 16 68012481 68012481 G T DPEP3 Missense_Mutation p.R180S 0.49 tolerated(0.06) probably_damaging(0.972) TCGA-49-4488-01 16 71604626 71604626 C A TAT Missense_Mutation p.G290C 0.62 deleterious(0) probably_damaging(1) TCGA-49-4488-01 16 87936058 87936058 A T CA5A Silent p.G176G 0.13 TCGA-49-4488-01 17 10439865 10439865 T G MYH2 Silent p.T652T 0.50 TCGA-49-4488-01 17 11787015 11787015 T C DNAH9 Missense_Mutation p.L3640P 0.60 probably_damaging(0.999) TCGA-49-4488-01 17 15620093 15620093 A G ZNF286A Missense_Mutation p.K352R 0.45 tolerated(0.08) benign(0.014) TCGA-49-4488-01 17 29553702 29553702 G T NF1 Nonsense_Mutation p.G751* 0.60 TCGA-49-4488-01 17 31318959 31318959 G T SPACA3 Translation_Start_Site p.M1? 0.70 deleterious_low_confidence(0) benign(0) TCGA-49-4488-01 17 35979858 35979858 C A DDX52 Missense_Mutation p.G535V 0.58 deleterious(0) probably_damaging(0.977) TCGA-49-4488-01 17 39324029 39324029 G T KRTAP4-3 Silent p.P132P 0.75 TCGA-49-4488-01 17 39506806 39506806 C A KRT33A Nonsense_Mutation p.E72* 0.56 TCGA-49-4488-01 17 51901793 51901793 G T KIF2B Nonsense_Mutation p.E467* 0.52 TCGA-49-4488-01 17 73627305 73627305 G A RECQL5 Silent p.S491S 0.22 TCGA-49-4488-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.58 TCGA-49-4488-01 18 13884841 13884841 C A MC2R Missense_Mutation p.G226V 0.69 deleterious(0) probably_damaging(1) TCGA-49-4488-01 18 31323882 31323882 C A ASXL3 Missense_Mutation p.S1357Y 0.53 probably_damaging(0.999) TCGA-49-4488-01 18 60036389 60036389 G T TNFRSF11A Missense_Mutation p.W413C 0.56 tolerated(0.25) benign(0.025) TCGA-49-4488-01 18 7080334 7080334 G T LAMA1 Silent p.R62R 0.42 TCGA-49-4488-01 19 10225118 10225118 C A PPAN-P2RY11 Missense_Mutation p.R697S 0.67 tolerated_low_confidence(0.13) benign(0.016) TCGA-49-4488-01 19 10602727 10602727 T A KEAP1 Missense_Mutation p.Q284L 0.56 deleterious(0) possibly_damaging(0.692) TCGA-49-4488-01 19 10886572 10886572 C T DNM2 Silent p.V193V 0.13 TCGA-49-4488-01 19 15064949 15064949 G A SLC1A6 Silent p.I454I 0.60 TCGA-49-4488-01 19 15291560 15291560 G T NOTCH3 Missense_Mutation p.P1025H 0.38 tolerated(0.22) possibly_damaging(0.722) TCGA-49-4488-01 19 17758168 17758168 C A UNC13A Silent p.A650A 0.35 TCGA-49-4488-01 19 18710443 18710443 G T CRLF1 Nonsense_Mutation p.S110* 0.30 TCGA-49-4488-01 19 18778916 18778916 G T KLHL26 Missense_Mutation p.D237Y 0.24 deleterious(0) probably_damaging(0.917) TCGA-49-4488-01 19 18888325 18888325 C T CRTC1 3'UTR 0.53 TCGA-49-4488-01 19 21720876 21720876 G T ZNF429 Missense_Mutation p.G674V 0.54 deleterious_low_confidence(0) benign(0.011) TCGA-49-4488-01 19 33422323 33422323 C T CEP89 Intron 0.05 TCGA-49-4488-01 19 38949803 38949803 G T RYR1 Missense_Mutation p.V729L 0.41 possibly_damaging(0.842) TCGA-49-4488-01 19 42821933 42821933 G T TMEM145 Missense_Mutation p.A325S 0.69 tolerated(0.13) benign(0.048) TCGA-49-4488-01 19 44891284 44891284 C A ZNF285 Nonsense_Mutation p.E375* 0.47 TCGA-49-4488-01 19 48558213 48558213 C A PLA2G4C Missense_Mutation p.A461S 0.47 tolerated(1) benign(0.041) TCGA-49-4488-01 19 50296349 50296349 G T AP2A1 Silent p.R235R 0.70 TCGA-49-4488-01 19 51628941 51628941 G T SIGLEC9 Missense_Mutation p.C170F 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-49-4488-01 19 55690358 55690358 C A SYT5 Missense_Mutation p.D18Y 0.17 tolerated(0.17) unknown(0) TCGA-49-4488-01 19 57133832 57133832 G T ZNF71 Missense_Mutation p.G393W 0.67 deleterious(0.02) probably_damaging(0.999) TCGA-49-4488-01 19 58189585 58189585 T A ZSCAN4 Missense_Mutation p.V205E 0.54 tolerated(0.28) benign(0.004) TCGA-49-4488-01 19 9063963 9063963 G T MUC16 Missense_Mutation p.S7828Y 0.34 unknown(0) TCGA-49-4488-01 19 9067932 9067932 A T MUC16 Missense_Mutation p.V6505E 0.19 unknown(0) TCGA-49-4488-01 19 9088957 9088957 C A MUC16 Missense_Mutation p.R953I 0.59 unknown(0) TCGA-49-4488-01 1 100731827 100731827 G A RTCA 5'UTR 0.24 TCGA-49-4488-01 1 107867366 107867366 C A NTNG1 Missense_Mutation p.L237I 0.30 deleterious(0) probably_damaging(0.968) TCGA-49-4488-01 1 11710099 11710100 - A FBXO2 Frame_Shift_Ins p.G142Wfs*22 0.15 TCGA-49-4488-01 1 119427378 119427378 G A TBX15 Nonsense_Mutation p.Q490* 0.23 TCGA-49-4488-01 1 152186815 152186815 C A HRNR Missense_Mutation p.Q2430H 0.23 unknown(0) TCGA-49-4488-01 1 15772225 15772225 A G CTRC Missense_Mutation p.Y258C 0.29 deleterious(0) probably_damaging(0.999) TCGA-49-4488-01 1 157805682 157805682 C A CD5L Nonsense_Mutation p.E107* 0.13 TCGA-49-4488-01 1 158612763 158612763 C T SPTA1 Nonsense_Mutation p.W1482* 0.45 TCGA-49-4488-01 1 158648304 158648304 G T SPTA1 Silent p.P233P 0.21 TCGA-49-4488-01 1 160144384 160144384 G T ATP1A4 Missense_Mutation p.V720L 0.46 deleterious(0.01) possibly_damaging(0.531) TCGA-49-4488-01 1 160771649 160771649 G T LY9 Intron 0.43 TCGA-49-4488-01 1 161594354 161594354 A G FCGR3B Missense_Mutation p.L254P 0.18 deleterious(0) probably_damaging(0.997) TCGA-49-4488-01 1 168344846 168344846 T C MIR557 RNA 0.42 TCGA-49-4488-01 1 172635120 172635120 G A FASLG Silent p.E270E 0.47 TCGA-49-4488-01 1 173505044 173505044 C T SLC9C2 Missense_Mutation p.S567N 0.10 tolerated(0.13) probably_damaging(0.997) TCGA-49-4488-01 1 175086339 175086339 C A TNN Missense_Mutation p.T795K 0.25 deleterious(0) probably_damaging(0.951) TCGA-49-4488-01 1 177937139 177937139 T A SEC16B 5'UTR 0.21 TCGA-49-4488-01 1 184764303 184764303 C A FAM129A Missense_Mutation p.M865I 0.47 tolerated_low_confidence(0.2) benign(0.012) TCGA-49-4488-01 1 190203595 190203595 G T BRINP3 Silent p.R211R 0.37 TCGA-49-4488-01 1 19481480 19481480 T - UBR4 Frame_Shift_Del p.K2130Nfs*41 0.10 TCGA-49-4488-01 1 203054889 203054889 C T MYOG Silent p.P67P 0.08 TCGA-49-4488-01 1 203276294 203276294 C G BTG2 Missense_Mutation p.R69G 0.26 deleterious(0) probably_damaging(0.996) TCGA-49-4488-01 1 20474875 20474875 C A PLA2G2F Missense_Mutation p.A206E 0.39 tolerated_low_confidence(0.14) benign(0.267) TCGA-49-4488-01 1 215179258 215179258 T A KCNK2 5'UTR 0.31 TCGA-49-4488-01 1 215844561 215844561 T G USH2A Missense_Mutation p.E4629A 0.11 probably_damaging(0.983) TCGA-49-4488-01 1 216373371 216373371 C A USH2A Missense_Mutation p.V1137L 0.20 benign(0.007) TCGA-49-4488-01 1 22141121 22141121 C G LDLRAD2 Missense_Mutation p.P106A 0.35 tolerated(0.06) benign(0.03) TCGA-49-4488-01 1 222696185 222696185 T A HHIPL2 Nonsense_Mutation p.R645* 0.17 TCGA-49-4488-01 1 222712016 222712016 C A HHIPL2 Silent p.L517L 0.12 TCGA-49-4488-01 1 229675222 229675222 C A ABCB10 Missense_Mutation p.W440C 0.41 deleterious(0) probably_damaging(0.984) TCGA-49-4488-01 1 229675224 229675224 A C ABCB10 Missense_Mutation p.W440G 0.39 deleterious(0) probably_damaging(0.93) TCGA-49-4488-01 1 231410987 231410987 G C GNPAT Missense_Mutation p.L588F 0.08 tolerated(0.12) benign(0.03) TCGA-49-4488-01 1 233122108 233122108 C T PCNXL2 Silent p.S1990S 0.54 TCGA-49-4488-01 1 237865347 237865347 T A RYR2 Missense_Mutation p.I3146N 0.30 possibly_damaging(0.776) TCGA-49-4488-01 1 240371044 240371044 C A FMN2 Missense_Mutation p.P978T 0.24 unknown(0) TCGA-49-4488-01 1 241094038 241094038 C A RGS7 Nonsense_Mutation p.E122* 0.17 TCGA-49-4488-01 1 247025359 247025359 C G AHCTF1 Missense_Mutation p.A1222P 0.41 tolerated(0.1) benign(0.024) TCGA-49-4488-01 1 247588869 247588869 C - NLRP3 Frame_Shift_Del p.P709Qfs*13 0.16 TCGA-49-4488-01 1 247769612 247769612 C A OR2G3 Missense_Mutation p.S242Y 0.24 deleterious(0) probably_damaging(0.966) TCGA-49-4488-01 1 247921471 247921471 G T OR1C1 Missense_Mutation p.Q80K 0.23 tolerated(1) benign(0) TCGA-49-4488-01 1 248039358 248039358 C T TRIM58 Missense_Mutation p.S343L 0.09 deleterious(0.01) possibly_damaging(0.892) TCGA-49-4488-01 1 248084593 248084593 C A OR2T8 Missense_Mutation p.R92S 0.49 tolerated(0.32) benign(0.003) TCGA-49-4488-01 1 248112520 248112520 C T OR2L8 Missense_Mutation p.R121C 0.09 deleterious(0.01) benign(0.211) TCGA-49-4488-01 1 248112648 248112648 C T OR2L8 Silent p.L163L 0.10 TCGA-49-4488-01 1 248129213 248129213 T A OR2AK2 Missense_Mutation p.C194S 0.52 deleterious(0.01) probably_damaging(1) TCGA-49-4488-01 1 248263111 248263111 G T OR2L13 Missense_Mutation p.G145V 0.23 tolerated(0.63) benign(0.001) TCGA-49-4488-01 1 34666517 34666517 A T C1orf94 Missense_Mutation p.K385I 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-49-4488-01 1 35863113 35863113 G T ZMYM4 Nonsense_Mutation p.E1056* 0.47 TCGA-49-4488-01 1 38078416 38078416 G T RSPO1 3'UTR 0.26 TCGA-49-4488-01 1 45268721 45268721 A T PLK3 Missense_Mutation p.S282C 0.15 tolerated(0.18) benign(0.015) TCGA-49-4488-01 1 52303236 52303236 C A NRD1 Missense_Mutation p.K229N 0.27 tolerated_low_confidence(0.2) benign(0.021) TCGA-49-4488-01 1 53932382 53932382 A C DMRTB1 3'UTR 0.54 TCGA-49-4488-01 1 65147015 65147015 A G CACHD1 Missense_Mutation p.I1110V 0.26 tolerated(0.75) benign(0.021) TCGA-49-4488-01 1 65524157 65524157 G C MIR101-1 RNA 0.17 TCGA-49-4488-01 1 72076749 72076749 C A NEGR1 Missense_Mutation p.V250L 0.16 deleterious(0) possibly_damaging(0.746) TCGA-49-4488-01 1 74670891 74670891 G T FPGT Missense_Mutation p.S387I 0.25 deleterious(0) probably_damaging(0.938) TCGA-49-4488-01 1 76397599 76397599 A T ASB17 Missense_Mutation p.S126R 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.766) TCGA-49-4488-01 1 84700881 84700881 C A PRKACB Missense_Mutation p.P364T 0.36 deleterious(0) probably_damaging(0.968) TCGA-49-4488-01 1 85279510 85279510 G T LPAR3 3'UTR 0.33 TCGA-49-4488-01 20 11904038 11904038 G T BTBD3 Missense_Mutation p.Q431H 0.53 tolerated(0.15) benign(0.03) TCGA-49-4488-01 20 29891154 29891154 T A DEFB116 Missense_Mutation p.Q57L 0.49 deleterious(0.03) benign(0.275) TCGA-49-4488-01 20 3684006 3684006 G A SIGLEC1 Missense_Mutation p.L356F 0.22 deleterious(0) probably_damaging(0.952) TCGA-49-4488-01 20 3766048 3766048 G A CENPB Silent p.L361L 0.27 TCGA-49-4488-01 20 57767000 57767000 C T ZNF831 Missense_Mutation p.A309V 0.48 tolerated(0.08) benign(0.003) TCGA-49-4488-01 21 10934106 10934106 C A TPTE Missense_Mutation p.D291Y 0.32 deleterious(0) probably_damaging(0.996) TCGA-49-4488-01 21 37711173 37711173 A G MORC3 Missense_Mutation p.I188V 0.36 tolerated(0.15) benign(0.073) TCGA-49-4488-01 21 42780167 42780167 G C MX2 3'UTR 0.09 TCGA-49-4488-01 21 43557548 43557548 G T UMODL1 Splice_Site p.X1387_splice 0.36 TCGA-49-4488-01 21 44524456 44524456 G A U2AF1 Missense_Mutation p.S34F 0.34 deleterious(0) possibly_damaging(0.835) TCGA-49-4488-01 22 16279254 16279254 T C POTEH Silent p.Q323Q 0.08 TCGA-49-4488-01 22 32792123 32792123 T G RTCB Missense_Mutation p.M310L 0.18 deleterious(0) probably_damaging(0.999) TCGA-49-4488-01 22 43195156 43195156 G C ARFGAP3 Missense_Mutation p.S474R 0.39 tolerated(0.38) benign(0.006) TCGA-49-4488-01 2 124783245 124783245 G T CNTNAP5 Silent p.R6R 0.19 TCGA-49-4488-01 2 133483297 133483297 G T NCKAP5 Missense_Mutation p.S1872R 0.23 deleterious(0.02) benign(0.039) TCGA-49-4488-01 2 136570190 136570190 C A LCT Missense_Mutation p.G682C 0.16 deleterious(0.04) probably_damaging(1) TCGA-49-4488-01 2 136594342 136594342 T C LCT Missense_Mutation p.H133R 0.29 tolerated(0.09) benign(0.013) TCGA-49-4488-01 2 140997062 140997062 G - LRP1B Frame_Shift_Del p.T4455Ifs*2 0.33 TCGA-49-4488-01 2 141272306 141272306 C T LRP1B Missense_Mutation p.A2729T 0.26 benign(0.012) TCGA-49-4488-01 2 155555721 155555721 G C KCNJ3 Missense_Mutation p.G145A 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-49-4488-01 2 168108351 168108351 G T XIRP2 Silent p.T3483T 0.33 TCGA-49-4488-01 2 174131278 174131278 A G MLTK Missense_Mutation p.R735G 0.34 tolerated_low_confidence(0.32) benign(0.003) TCGA-49-4488-01 2 179435936 179435936 C G TTN Missense_Mutation p.E24975Q 0.05 TCGA-49-4488-01 2 179588619 179588619 C A TTN Missense_Mutation p.G7123W 0.24 TCGA-49-4488-01 2 205829880 205829880 T G PARD3B Missense_Mutation p.I76M 0.25 tolerated(0.17) possibly_damaging(0.865) TCGA-49-4488-01 2 21228767 21228767 T G APOB Missense_Mutation p.H3658P 0.70 benign(0.216) TCGA-49-4488-01 2 215279259 215279259 C A VWC2L Missense_Mutation p.N114K 0.64 tolerated(0.25) probably_damaging(0.979) TCGA-49-4488-01 2 216981433 216981433 G T XRCC5 Missense_Mutation p.G63C 0.28 deleterious(0.01) possibly_damaging(0.824) TCGA-49-4488-01 2 219252294 219252294 G T SLC11A1 Missense_Mutation p.R193L 0.10 deleterious(0) probably_damaging(0.983) TCGA-49-4488-01 2 220498124 220498124 C T SLC4A3 Missense_Mutation p.A496V 0.12 tolerated(0.32) benign(0.015) TCGA-49-4488-01 2 228235652 228235652 C A TM4SF20 Silent p.A76A 0.21 TCGA-49-4488-01 2 234602162 234602162 T A UGT1A6 Missense_Mutation p.F171Y 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-49-4488-01 2 240011772 240011772 C A HDAC4 Missense_Mutation p.G769V 0.15 tolerated(0.06) benign(0.082) TCGA-49-4488-01 2 31189075 31189075 G T GALNT14 Silent p.I136I 0.65 TCGA-49-4488-01 2 33442709 33442709 C A LTBP1 Missense_Mutation p.P598T 0.72 deleterious(0) probably_damaging(1) TCGA-49-4488-01 2 37349652 37349652 G C EIF2AK2 Nonsense_Mutation p.S355* 0.12 TCGA-49-4488-01 2 50723056 50723056 G T NRXN1 Missense_Mutation p.N1059K 0.12 deleterious(0) probably_damaging(1) TCGA-49-4488-01 2 71043709 71043709 C G CLEC4F Missense_Mutation p.R268S 0.70 tolerated(0.33) possibly_damaging(0.836) TCGA-49-4488-01 2 74040979 74040979 C A C2orf78 Missense_Mutation p.S158Y 0.80 deleterious(0) probably_damaging(1) TCGA-49-4488-01 2 95941743 95941743 G T PROM2 Silent p.V120V 0.15 TCGA-49-4488-01 2 98341688 98341688 C T ZAP70 Missense_Mutation p.S179F 0.05 tolerated(0.06) possibly_damaging(0.697) TCGA-49-4488-01 3 108110731 108110731 G A MYH15 Missense_Mutation p.A1789V 0.08 deleterious(0.02) possibly_damaging(0.897) TCGA-49-4488-01 3 112647739 112647739 G T CD200R1 Silent p.V231V 0.09 TCGA-49-4488-01 3 131254166 131254166 G A CPNE4 Missense_Mutation p.P516L 0.27 tolerated(0.06) probably_damaging(0.997) TCGA-49-4488-01 3 134323159 134323159 G C KY Missense_Mutation p.I416M 0.30 deleterious(0) probably_damaging(0.988) TCGA-49-4488-01 3 143708459 143708459 G C C3orf58 Missense_Mutation p.D357H 0.04 deleterious(0) probably_damaging(1) TCGA-49-4488-01 3 148558565 148558565 G - CPB1 Frame_Shift_Del p.E123Kfs*3 0.21 TCGA-49-4488-01 3 148927062 148927062 G T CP Nonsense_Mutation p.Y239* 0.21 TCGA-49-4488-01 3 164907671 164907671 A T SLITRK3 Silent p.S316S 0.31 TCGA-49-4488-01 3 167016239 167016239 T A ZBBX Missense_Mutation p.Q578L 0.07 tolerated(0.09) possibly_damaging(0.853) TCGA-49-4488-01 3 169574170 169574170 C T LRRC31 Silent p.L259L 0.16 TCGA-49-4488-01 3 171329425 171329425 C A PLD1 Intron 0.46 TCGA-49-4488-01 3 186570891 186570891 G T ADIPOQ Missense_Mutation p.G15V 0.33 tolerated(0.56) benign(0.006) TCGA-49-4488-01 3 193039469 193039469 C G ATP13A5 Splice_Site p.X639_splice 0.04 TCGA-49-4488-01 3 19554470 19554470 C T KCNH8 Silent p.P696P 0.15 TCGA-49-4488-01 3 21706480 21706480 A T ZNF385D Silent p.R21R 0.35 TCGA-49-4488-01 3 35778767 35778767 G T ARPP21 Missense_Mutation p.Q485H 0.44 deleterious(0.03) benign(0.007) TCGA-49-4488-01 3 38781172 38781172 G T SCN10A Missense_Mutation p.T705N 0.25 deleterious(0) probably_damaging(0.999) TCGA-49-4488-01 3 44952602 44952602 C A TGM4 Missense_Mutation p.P587T 0.32 deleterious(0) probably_damaging(0.987) TCGA-49-4488-01 3 44952603 44952603 C A TGM4 Missense_Mutation p.P587H 0.31 deleterious(0) probably_damaging(0.998) TCGA-49-4488-01 3 49848422 49848422 C A UBA7 Missense_Mutation p.A409S 0.30 tolerated(0.22) benign(0.007) TCGA-49-4488-01 3 55922538 55922538 C A ERC2 Nonsense_Mutation p.E815* 0.33 TCGA-49-4488-01 3 71830726 71830726 G T PROK2 Silent p.S38S 0.22 TCGA-49-4488-01 3 97731232 97731232 G A GABRR3 RNA 0.27 TCGA-49-4488-01 3 98251936 98251936 G T GPR15 Missense_Mutation p.R353S 0.17 tolerated(0.1) benign(0.146) TCGA-49-4488-01 4 106601112 106601112 T G ARHGEF38 3'UTR 0.43 TCGA-49-4488-01 4 114275528 114275528 C A ANK2 Silent p.P1918P 0.40 TCGA-49-4488-01 4 126372736 126372736 G T FAT4 Missense_Mutation p.R3522L 0.34 probably_damaging(1) TCGA-49-4488-01 4 143045795 143045795 G T INPP4B Missense_Mutation p.S613R 0.42 deleterious(0.01) possibly_damaging(0.697) TCGA-49-4488-01 4 151504265 151504265 C A MAB21L2 Silent p.A28A 0.22 TCGA-49-4488-01 4 177632762 177632762 C A VEGFC Missense_Mutation p.V199L 0.33 deleterious(0) benign(0.165) TCGA-49-4488-01 4 186544384 186544384 C A SORBS2 Missense_Mutation p.E829D 0.24 tolerated(0.13) benign(0.016) TCGA-49-4488-01 4 187197457 187197457 C A F11 Missense_Mutation p.A223D 0.27 deleterious(0.01) possibly_damaging(0.685) TCGA-49-4488-01 4 189068134 189068134 G T TRIML1 Missense_Mutation p.G339W 0.31 deleterious(0) probably_damaging(0.999) TCGA-49-4488-01 4 53340 53340 G C ZNF595 5'UTR 0.06 TCGA-49-4488-01 4 65170927 65170927 A G TECRL Silent p.S229S 0.29 TCGA-49-4488-01 4 69513061 69513061 C A UGT2B15 Missense_Mutation p.D452Y 0.27 deleterious(0) probably_damaging(0.996) TCGA-49-4488-01 4 70361499 70361499 C A UGT2B4 Silent p.L27L 0.26 TCGA-49-4488-01 4 76582913 76582913 T C G3BP2 Missense_Mutation p.D60G 0.32 deleterious(0) benign(0.004) TCGA-49-4488-01 4 76726398 76726398 G T USO1 Missense_Mutation p.R753L 0.50 tolerated(0.25) benign(0.148) TCGA-49-4488-01 4 88767549 88767549 G T MEPE Missense_Mutation p.S510I 0.29 deleterious_low_confidence(0) unknown(0) TCGA-49-4488-01 4 96091427 96091427 G T UNC5C Silent p.V836V 0.28 TCGA-49-4488-01 5 102423878 102423878 T C GIN1 Splice_Site p.X432_splice 0.31 TCGA-49-4488-01 5 107216724 107216724 T C FBXL17 Intron 0.50 TCGA-49-4488-01 5 112720711 112720711 C A MCC Silent p.L123L 0.54 TCGA-49-4488-01 5 11364842 11364842 C T CTNND2 Silent p.P446P 0.10 TCGA-49-4488-01 5 115469791 115469791 C A COMMD10 Missense_Mutation p.N142K 0.24 deleterious(0) probably_damaging(0.98) TCGA-49-4488-01 5 128994400 128994400 A T ADAMTS19 Nonsense_Mutation p.K793* 0.34 TCGA-49-4488-01 5 140711144 140711144 C G PCDHGA1 Missense_Mutation p.T298R 0.08 deleterious_low_confidence(0) possibly_damaging(0.877) TCGA-49-4488-01 5 140720142 140720142 G T PCDHGA2 Missense_Mutation p.R535L 0.43 tolerated_low_confidence(0.3) benign(0.077) TCGA-49-4488-01 5 140724495 140724495 G A PCDHGA3 Missense_Mutation p.G299R 0.59 deleterious_low_confidence(0) probably_damaging(1) TCGA-49-4488-01 5 150696494 150696494 G T SLC36A2 Missense_Mutation p.L446M 0.64 tolerated(0.36) benign(0.064) TCGA-49-4488-01 5 156668716 156668716 C A ITK Missense_Mutation p.A349E 0.53 deleterious(0.02) benign(0.275) TCGA-49-4488-01 5 171533719 171533719 G C STK10 Silent p.A231A 0.17 TCGA-49-4488-01 5 35876392 35876392 A T IL7R Missense_Mutation p.K395M 0.07 tolerated(0.2) possibly_damaging(0.551) TCGA-49-4488-01 5 39306769 39306769 C T C9 Missense_Mutation p.V456I 0.20 tolerated(0.54) benign(0.074) TCGA-49-4488-01 5 40681206 40681206 G T PTGER4 Silent p.V37V 0.11 TCGA-49-4488-01 5 45261936 45261936 G A HCN1 3'UTR 0.34 TCGA-49-4488-01 5 60067911 60067911 A T ELOVL7 Missense_Mutation p.V25D 0.24 deleterious(0) possibly_damaging(0.649) TCGA-49-4488-01 5 63905141 63905141 C A RGS7BP 3'UTR 0.19 TCGA-49-4488-01 5 66492422 66492422 G T CD180 Silent p.A16A 0.64 TCGA-49-4488-01 5 68491566 68491566 G C CENPH Missense_Mutation p.E88Q 0.43 deleterious(0.01) possibly_damaging(0.849) TCGA-49-4488-01 5 75950817 75950817 A G IQGAP2 Missense_Mutation p.Y770C 0.69 deleterious(0) probably_damaging(0.999) TCGA-49-4488-01 5 7866830 7866830 G A FASTKD3 Missense_Mutation p.S456L 0.07 tolerated(0.27) benign(0.135) TCGA-49-4488-01 5 94876421 94876421 C G TTC37 Missense_Mutation p.E172D 0.47 tolerated(0.1) benign(0.003) TCGA-49-4488-01 6 110763799 110763799 C A SLC22A16 Silent p.V277V 0.20 TCGA-49-4488-01 6 114384041 114384041 C T HS3ST5 Intron 0.30 TCGA-49-4488-01 6 132058512 132058512 G T ENPP3 Missense_Mutation p.D703Y 0.21 deleterious(0.01) possibly_damaging(0.515) TCGA-49-4488-01 6 132859760 132859760 T G TAAR9 Missense_Mutation p.F111C 0.20 tolerated(0.36) probably_damaging(0.999) TCGA-49-4488-01 6 133785997 133785997 G A EYA4 Splice_Site p.X268_splice 0.19 TCGA-49-4488-01 6 13470384 13470384 G C AL583828.1 Missense_Mutation p.I43M 0.27 possibly_damaging(0.506) TCGA-49-4488-01 6 138202505 138202505 C T TNFAIP3 3'UTR 0.12 TCGA-49-4488-01 6 138202512 138202512 C T TNFAIP3 3'UTR 0.11 TCGA-49-4488-01 6 30633333 30633333 C A DHX16 Nonsense_Mutation p.E282* 0.42 TCGA-49-4488-01 6 31749539 31749539 C A VARS Splice_Site p.X783_splice 0.35 TCGA-49-4488-01 6 38891908 38891908 T G DNAH8 Missense_Mutation p.N3427K 0.30 possibly_damaging(0.792) TCGA-49-4488-01 6 42236542 42236542 G T TRERF1 Missense_Mutation p.Q263K 0.18 deleterious_low_confidence(0.02) benign(0.184) TCGA-49-4488-01 6 43276112 43276112 G C CRIP3 Missense_Mutation p.R27G 0.09 deleterious(0.03) possibly_damaging(0.462) TCGA-49-4488-01 6 46806780 46806780 C A MEP1A Silent p.G716G 0.16 TCGA-49-4488-01 6 49754615 49754615 G A PGK2 Silent p.L96L 0.41 TCGA-49-4488-01 6 66205157 66205157 G T EYS Silent p.I49I 0.15 TCGA-49-4488-01 6 90605636 90605636 G A GJA10 Silent p.Q483Q 0.25 TCGA-49-4488-01 6 99374630 99374630 C A FBXL4 Missense_Mutation p.A79S 0.24 tolerated(0.14) benign(0.235) TCGA-49-4488-01 7 107569639 107569640 - T LAMB1 Frame_Shift_Ins p.T1586Nfs*4 0.32 TCGA-49-4488-01 7 117025861 117025861 C T ASZ1 Missense_Mutation p.R148K 0.09 tolerated(1) benign(0.004) TCGA-49-4488-01 7 134873253 134873253 C A WDR91 Missense_Mutation p.G605W 0.54 deleterious(0) probably_damaging(1) TCGA-49-4488-01 7 137170135 137170135 C A DGKI Missense_Mutation p.Q804H 0.58 tolerated(0.4) benign(0.001) TCGA-49-4488-01 7 140035151 140035151 A T SLC37A3 3'UTR 0.11 TCGA-49-4488-01 7 143573464 143573464 C T FAM115A Missense_Mutation p.A80T 0.60 deleterious(0.01) probably_damaging(0.985) TCGA-49-4488-01 7 143806748 143806748 C A OR2A2 Missense_Mutation p.L25I 0.10 tolerated(0.13) benign(0.046) TCGA-49-4488-01 7 36927225 36927225 G T ELMO1 Missense_Mutation p.R552S 0.35 deleterious(0.01) possibly_damaging(0.62) TCGA-49-4488-01 7 37252959 37252959 T G ELMO1 Missense_Mutation p.K312T 0.03 tolerated(0.2) probably_damaging(0.995) TCGA-49-4488-01 7 48320968 48320968 C T ABCA13 Nonsense_Mutation p.Q2919* 0.17 TCGA-49-4488-01 7 48520676 48520676 A G ABCA13 Missense_Mutation p.H4340R 0.21 benign(0.001) TCGA-49-4488-01 7 50129290 50129290 C A ZPBP Missense_Mutation p.R48L 0.21 deleterious(0.02) benign(0.016) TCGA-49-4488-01 7 54825215 54825215 T C SEC61G Missense_Mutation p.K23E 0.29 deleterious(0.05) benign(0.019) TCGA-49-4488-01 7 64438693 64438693 C A ZNF117 Missense_Mutation p.C419F 0.61 deleterious(0) probably_damaging(0.981) TCGA-49-4488-01 7 82546048 82546048 A T PCLO Missense_Mutation p.C3752S 0.11 unknown(0) TCGA-49-4488-01 7 87037453 87037453 T G ABCB4 Missense_Mutation p.K1060T 0.05 deleterious(0.04) benign(0.374) TCGA-49-4488-01 8 113420594 113420594 G T CSMD3 Missense_Mutation p.T1853N 0.39 tolerated(0.11) probably_damaging(0.978) TCGA-49-4488-01 8 125989475 125989475 A T ZNF572 Missense_Mutation p.H322L 0.26 deleterious(0) probably_damaging(0.999) TCGA-49-4488-01 8 131792865 131792865 G T ADCY8 Missense_Mutation p.P1176H 0.42 tolerated(0.06) benign(0.014) TCGA-49-4488-01 8 143960556 143960556 T G CYP11B1 Missense_Mutation p.D96A 0.08 deleterious(0.03) possibly_damaging(0.58) TCGA-49-4488-01 8 30701125 30701125 G T TEX15 Nonsense_Mutation p.C1803* 0.31 TCGA-49-4488-01 8 41519408 41519408 G A ANK1 Nonsense_Mutation p.Q1885* 0.39 TCGA-49-4488-01 8 51571151 51571151 G T SNTG1 Splice_Site p.X323_splice 0.07 TCGA-49-4488-01 8 52773652 52773652 T A PCMTD1 Missense_Mutation p.E20D 0.29 tolerated(0.13) benign(0.029) TCGA-49-4488-01 8 62212596 62212596 T A CLVS1 Silent p.R70R 0.24 TCGA-49-4488-01 8 72969995 72969995 A T TRPA1 Silent p.T350T 0.22 TCGA-49-4488-01 8 77776697 77776697 C A ZFHX4 Missense_Mutation p.Q3583K 0.31 probably_damaging(0.915) TCGA-49-4488-01 8 99961384 99961384 C A OSR2 Silent p.T68T 0.48 TCGA-49-4488-01 9 100459595 100459595 C A XPA 5'UTR 0.22 TCGA-49-4488-01 9 104303258 104303258 G C RNF20 Splice_Site p.X210_splice 0.45 TCGA-49-4488-01 9 107547747 107547747 C A ABCA1 Missense_Mutation p.S2192I 0.47 tolerated(0.07) benign(0.359) TCGA-49-4488-01 9 131345394 131345394 G T SPTAN1 Missense_Mutation p.Q615H 0.08 deleterious(0.03) probably_damaging(0.96) TCGA-49-4488-01 9 139910907 139910907 C A ABCA2 Missense_Mutation p.M980I 0.10 tolerated(1) benign(0.002) TCGA-49-4488-01 9 18574147 18574147 T C ADAMTSL1 Silent p.C119C 0.32 TCGA-49-4488-01 9 79325691 79325691 G T PRUNE2 Missense_Mutation p.P500H 0.54 deleterious(0) probably_damaging(0.959) TCGA-49-4488-01 X 101095988 101095988 C A NXF5 Missense_Mutation p.E160D 0.31 deleterious(0.02) benign(0.076) TCGA-49-4488-01 X 103041586 103041586 C A PLP1 Silent p.G128G 0.24 TCGA-49-4488-01 X 111914366 111914366 T A LHFPL1 Missense_Mutation p.T85S 0.34 tolerated(0.07) possibly_damaging(0.629) TCGA-49-4488-01 X 114863589 114863589 T A PLS3 Missense_Mutation p.L106Q 0.31 deleterious(0.03) possibly_damaging(0.466) TCGA-49-4488-01 X 118676546 118676546 G T CXorf56 Silent p.T145T 0.24 TCGA-49-4488-01 X 119410885 119410885 C A TMEM255A Missense_Mutation p.G201V 0.17 tolerated(0.13) probably_damaging(1) TCGA-49-4488-01 X 122528962 122528962 C A GRIA3 Silent p.A298A 0.27 TCGA-49-4488-01 X 123657421 123657421 G A TENM1 Silent p.S942S 0.26 TCGA-49-4488-01 X 125685987 125685987 C A DCAF12L1 Missense_Mutation p.W202L 0.34 deleterious(0) probably_damaging(1) TCGA-49-4488-01 X 125686176 125686176 C A DCAF12L1 Missense_Mutation p.S139I 0.31 deleterious(0.01) benign(0.028) TCGA-49-4488-01 X 135630964 135630964 C A VGLL1 Missense_Mutation p.P144H 0.22 deleterious(0) probably_damaging(0.979) TCGA-49-4488-01 X 14863393 14863393 C A FANCB Silent p.V504V 0.24 TCGA-49-4488-01 X 152721026 152721026 G A HAUS7 Missense_Mutation p.H312Y 0.12 tolerated(1) benign(0.001) TCGA-49-4488-01 X 153068804 153068804 C G PDZD4 3'UTR 0.30 TCGA-49-4488-01 X 153590914 153590914 C T FLNA Missense_Mutation p.G813R 0.16 tolerated(0.2) benign(0.375) TCGA-49-4488-01 X 19389565 19389565 G T MAP3K15 Missense_Mutation p.H1064Q 0.31 tolerated(0.16) benign(0.005) TCGA-49-4488-01 X 2139045 2139045 G A DHRSX 3'UTR 0.30 TCGA-49-4488-01 X 23723693 23723693 G T ACOT9 Silent p.R318R 0.29 TCGA-49-4488-01 X 2688630 2688630 C A XG Missense_Mutation p.P34H 0.28 deleterious(0) probably_damaging(0.979) TCGA-49-4488-01 X 29938179 29938179 G C IL1RAPL1 Missense_Mutation p.R342P 0.32 deleterious(0.01) probably_damaging(0.951) TCGA-49-4488-01 X 30269550 30269550 A G MAGEB1 Missense_Mutation p.R314G 0.27 deleterious(0.01) unknown(0) TCGA-49-4488-01 X 3235859 3235859 A G MXRA5 Missense_Mutation p.S1955P 0.24 tolerated(0.24) benign(0.044) TCGA-49-4488-01 X 3240143 3240143 G T MXRA5 Missense_Mutation p.Q1195K 0.38 tolerated(1) benign(0.002) TCGA-49-4488-01 X 35820780 35820780 T A MAGEB16 Missense_Mutation p.L156Q 0.19 tolerated(0.39) benign(0.406) TCGA-49-4488-01 X 37026557 37026557 C T FAM47C Missense_Mutation p.P25L 0.19 tolerated(0.42) benign(0.308) TCGA-49-4488-01 X 46949272 46949272 C T RGN Silent p.D148D 0.22 TCGA-49-4488-01 X 52842245 52842245 G T XAGE5 Missense_Mutation p.D52Y 0.22 tolerated(0.05) benign(0.376) TCGA-49-4488-01 X 53578393 53578393 G T HUWE1 Missense_Mutation p.P2977H 0.18 probably_damaging(0.971) TCGA-49-4488-01 X 54224971 54224971 G A WNK3 Missense_Mutation p.P1730L 0.47 deleterious_low_confidence(0.01) benign(0.066) TCGA-49-4488-01 X 54224972 54224972 G T WNK3 Missense_Mutation p.P1730T 0.46 tolerated_low_confidence(0.24) benign(0.003) TCGA-49-4488-01 X 54982650 54982650 C A PFKFB1 Missense_Mutation p.D192Y 0.31 probably_damaging(0.999) TCGA-49-4488-01 X 57936549 57936549 G T ZXDA Silent p.T102T 0.27 TCGA-49-4488-01 X 63413106 63413106 G T AMER1 Missense_Mutation p.R21S 0.20 deleterious_low_confidence(0) benign(0) TCGA-49-4488-01 X 70345265 70345265 G A MED12 Missense_Mutation p.R764Q 0.28 probably_damaging(0.996) TCGA-49-4488-01 X 75004593 75004593 G A MAGEE2 Silent p.F98F 0.06 TCGA-49-4488-01 X 77381507 77381507 A G PGK1 3'UTR 0.40 TCGA-49-4488-01 X 84363933 84363933 C A SATL1 Silent p.S14S 0.35 TCGA-49-4490-01 10 117486774 117486774 G T ATRNL1 Missense_Mutation p.R1271L 0.12 tolerated(1) benign(0.091) TCGA-49-4490-01 10 118460544 118460544 G A HSPA12A Silent p.A117A 0.10 TCGA-49-4490-01 11 5443439 5443439 G C OR51Q1 Missense_Mutation p.Q3H 0.12 tolerated(0.11) benign(0.002) TCGA-49-4490-01 11 55541387 55541387 C T OR5D13 Silent p.S158S 0.08 TCGA-49-4490-01 11 58381734 58381734 G C ZFP91 Missense_Mutation p.K340N 0.15 deleterious(0) probably_damaging(0.996) TCGA-49-4490-01 12 123497231 123497231 T A PITPNM2 Missense_Mutation p.Y115F 0.16 deleterious(0.05) probably_damaging(0.996) TCGA-49-4490-01 12 21621467 21621467 C G PYROXD1 Missense_Mutation p.Q428E 0.14 deleterious(0) possibly_damaging(0.751) TCGA-49-4490-01 12 51497949 51497949 G C TFCP2 Missense_Mutation p.P319A 0.10 tolerated(0.65) benign(0.001) TCGA-49-4490-01 12 56436228 56436228 A G RPS26 Missense_Mutation p.N8S 0.15 tolerated(0.08) possibly_damaging(0.621) TCGA-49-4490-01 14 106320724 106320724 G A IGHM Silent p.F362F 0.09 TCGA-49-4490-01 14 20215725 20215725 G T OR4Q3 Missense_Mutation p.V47L 0.05 tolerated(0.4) benign(0.002) TCGA-49-4490-01 14 24621036 24621036 C T RNF31 Silent p.S655S 0.13 TCGA-49-4490-01 14 90764706 90764706 A G NRDE2 Missense_Mutation p.F522L 0.04 deleterious(0) probably_damaging(0.934) TCGA-49-4490-01 15 43658995 43658995 G A ZSCAN29 Missense_Mutation p.P179S 0.21 tolerated(0.83) benign(0.009) TCGA-49-4490-01 15 82532838 82532838 T C EFTUD1 Missense_Mutation p.N146S 0.33 deleterious(0) probably_damaging(0.985) TCGA-49-4490-01 16 21817525 21817525 C T RRN3P1 RNA 0.13 TCGA-49-4490-01 16 5064922 5064922 C T SEC14L5 Missense_Mutation p.S681L 0.08 deleterious(0.02) unknown(0) TCGA-49-4490-01 16 58550737 58550737 G C SETD6 Missense_Mutation p.E233Q 0.04 deleterious(0.03) probably_damaging(0.948) TCGA-49-4490-01 17 10352023 10352023 G C MYH4 Silent p.L1481L 0.06 TCGA-49-4490-01 17 33849654 33849654 C T SLFN12L 5'UTR 0.10 TCGA-49-4490-01 17 48678500 48678500 G A CACNA1G Missense_Mutation p.A1294T 0.09 deleterious(0) probably_damaging(0.998) TCGA-49-4490-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.51 TCGA-49-4490-01 17 7643738 7643738 G T DNAH2 Missense_Mutation p.K459N 0.16 benign(0.263) TCGA-49-4490-01 18 12367060 12367060 C T AFG3L2 Silent p.L152L 0.25 TCGA-49-4490-01 18 47322175 47322175 C G ACAA2 Missense_Mutation p.R130T 0.08 deleterious(0.04) probably_damaging(0.944) TCGA-49-4490-01 18 48591919 48591919 G A SMAD4 Missense_Mutation p.R361H 0.05 deleterious(0.03) probably_damaging(1) TCGA-49-4490-01 19 10127840 10127840 G C RDH8 Missense_Mutation p.E91Q 0.15 tolerated(0.37) benign(0.041) TCGA-49-4490-01 19 17000388 17000388 C G F2RL3 Missense_Mutation p.S38R 0.08 tolerated(0.38) benign(0.144) TCGA-49-4490-01 19 50170394 50170394 C T BCL2L12 Missense_Mutation p.R160C 0.05 deleterious(0.03) probably_damaging(0.927) TCGA-49-4490-01 19 50655863 50655863 G A IZUMO2 3'UTR 0.09 TCGA-49-4490-01 19 5699070 5699071 - C LONP1 Frame_Shift_Ins p.M552Hfs*3 0.13 TCGA-49-4490-01 1 119575489 119575489 T C WARS2 3'UTR 0.32 TCGA-49-4490-01 1 14107311 14107311 C T PRDM2 Silent p.C1007C 0.04 TCGA-49-4490-01 1 151773644 151773644 C T LINGO4 Missense_Mutation p.D513N 0.08 tolerated(0.24) benign(0.001) TCGA-49-4490-01 1 176758977 176758977 G T PAPPA2 Missense_Mutation p.G1583V 0.40 deleterious(0) probably_damaging(1) TCGA-49-4490-01 1 19481946 19481946 C T UBR4 Missense_Mutation p.E2097K 0.05 benign(0.25) TCGA-49-4490-01 1 20442055 20442055 G A PLA2G2D Silent p.C79C 0.08 TCGA-49-4490-01 1 220808734 220808734 C G MARK1 Missense_Mutation p.S380W 0.05 deleterious(0) possibly_damaging(0.686) TCGA-49-4490-01 1 38288038 38288038 A G MTF1 Missense_Mutation p.S508P 0.06 tolerated_low_confidence(0.45) benign(0) TCGA-49-4490-01 1 86909605 86909605 G A CLCA2 Missense_Mutation p.D542N 0.05 deleterious(0.04) probably_damaging(0.938) TCGA-49-4490-01 22 19839740 19839740 G A C22orf29 Silent p.I15I 0.27 TCGA-49-4490-01 22 41919908 41919908 C T ACO2 Missense_Mutation p.A482V 0.35 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-49-4490-01 2 118703137 118703137 G A CCDC93 Missense_Mutation p.P440S 0.05 tolerated(0.72) benign(0) TCGA-49-4490-01 2 207945748 207945748 A G KLF7 3'UTR 0.15 TCGA-49-4490-01 2 211444463 211444463 C T CPS1 Missense_Mutation p.T172I 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-49-4490-01 2 228881884 228881884 C T SPHKAP Missense_Mutation p.R1229Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-49-4490-01 2 71060878 71060878 G T CD207 Missense_Mutation p.P155Q 0.07 tolerated(0.35) probably_damaging(0.982) TCGA-49-4490-01 3 172224321 172224321 G A TNFSF10 Silent p.D269D 0.06 TCGA-49-4490-01 3 51697441 51697441 G A RAD54L2 3'UTR 0.07 TCGA-49-4490-01 3 51978890 51978890 G C PARP3 Missense_Mutation p.E207Q 0.11 deleterious(0) benign(0.175) TCGA-49-4490-01 4 126389827 126389827 C T FAT4 Silent p.G4020G 0.14 TCGA-49-4490-01 5 23522507 23522507 T C PRDM9 Silent p.D201D 0.06 TCGA-49-4490-01 6 126080673 126080673 G A HEY2 Missense_Mutation p.A247T 0.09 tolerated(0.16) possibly_damaging(0.517) TCGA-49-4490-01 6 135239586 135239586 G A ALDH8A1 Silent p.F477F 0.07 TCGA-49-4490-01 6 30309601 30309601 G A TRIM39 Silent p.R374R 0.10 TCGA-49-4490-01 6 32411157 32411157 A G HLA-DRA Missense_Mutation p.Y175C 0.09 deleterious(0) possibly_damaging(0.468) TCGA-49-4490-01 6 33406039 33406039 C T SYNGAP1 Missense_Mutation p.H453Y 0.09 deleterious(0) probably_damaging(0.996) TCGA-49-4490-01 7 131866933 131866933 C T PLXNA4 Missense_Mutation p.A1059T 0.16 tolerated(1) benign(0.002) TCGA-49-4490-01 7 47835714 47835714 C G PKD1L1 Missense_Mutation p.R2743T 0.10 deleterious(0.01) probably_damaging(0.959) TCGA-49-4490-01 7 55259515 55259515 T G EGFR Missense_Mutation p.L858R 0.40 deleterious(0) probably_damaging(1) TCGA-49-4490-01 8 119391896 119391896 C T SAMD12 Missense_Mutation p.M122I 0.14 tolerated(0.08) probably_damaging(0.954) TCGA-49-4490-01 8 17412165 17412165 G A SLC7A2 Silent p.T424T 0.04 TCGA-49-4490-01 8 55534023 55534023 C T RP1 Missense_Mutation p.T166M 0.13 tolerated(0.19) benign(0.097) TCGA-49-4490-01 8 67734616 67734616 C T SGK3 Silent p.V113V 0.06 TCGA-49-4490-01 9 130581017 130581017 G A ENG Missense_Mutation p.P469L 0.04 tolerated(1) benign(0) TCGA-49-4490-01 9 98278893 98278893 T C RP11-435O5.4 3'Flank 0.37 TCGA-49-4490-01 X 110654183 110654183 T C DCX Missense_Mutation p.H7R 0.41 deleterious_low_confidence(0) unknown(0) TCGA-49-4490-01 X 49048091 49048091 C T SYP Missense_Mutation p.A249T 0.49 tolerated(0.34) unknown(0) TCGA-49-4490-01 X 56591554 56591554 T C UBQLN2 Silent p.F416F 0.26 TCGA-49-4494-01 10 50916423 50916423 T A C10orf53 Missense_Mutation p.S78R 0.27 tolerated_low_confidence(0.13) benign(0.332) TCGA-49-4494-01 10 73056384 73056384 G C UNC5B Missense_Mutation p.C792S 0.13 deleterious(0.02) possibly_damaging(0.696) TCGA-49-4494-01 10 93576936 93576936 G T TNKS2 Missense_Mutation p.G157V 0.24 deleterious(0) possibly_damaging(0.569) TCGA-49-4494-01 11 103029646 103029646 G A DYNC2H1 Missense_Mutation p.R1423H 0.19 probably_damaging(1) TCGA-49-4494-01 11 17527437 17527437 A T USH1C Silent p.P691P 0.19 TCGA-49-4494-01 11 17552759 17552759 C A USH1C Missense_Mutation p.C110F 0.19 deleterious(0) probably_damaging(0.997) TCGA-49-4494-01 11 18503191 18503191 C A TSG101 Missense_Mutation p.D357Y 0.21 deleterious(0) probably_damaging(0.975) TCGA-49-4494-01 11 18503192 18503192 C G TSG101 Silent p.L356L 0.22 TCGA-49-4494-01 11 19890506 19890506 A T NAV2 Silent p.A158A 0.34 TCGA-49-4494-01 11 30033103 30033103 C A KCNA4 Nonsense_Mutation p.E375* 0.22 TCGA-49-4494-01 11 30033104 30033104 C A KCNA4 Silent p.V374V 0.23 TCGA-49-4494-01 11 36614627 36614627 G T RAG2 Missense_Mutation p.N364K 0.19 deleterious(0.01) possibly_damaging(0.567) TCGA-49-4494-01 11 48146645 48146645 G T PTPRJ Missense_Mutation p.G334W 0.18 deleterious(0) probably_damaging(0.98) TCGA-49-4494-01 11 49192821 49192821 G T FOLH1 Missense_Mutation p.P412T 0.14 deleterious(0) probably_damaging(1) TCGA-49-4494-01 11 55607017 55607017 C A OR5D16 Missense_Mutation p.P264T 0.15 deleterious(0.01) probably_damaging(0.99) TCGA-49-4494-01 11 58170034 58170034 C A OR5B3 Silent p.L283L 0.21 TCGA-49-4494-01 11 58477937 58477937 T A GLYAT Intron 0.13 TCGA-49-4494-01 11 59225059 59225059 T A OR4D6 Missense_Mutation p.L209H 0.22 deleterious(0) probably_damaging(0.984) TCGA-49-4494-01 11 62037700 62037700 G T SCGB2A2 Silent p.L4L 0.18 TCGA-49-4494-01 11 62373360 62373360 T C EML3 Silent p.G583G 0.21 TCGA-49-4494-01 11 65272262 65272262 C T MALAT1 RNA 0.16 TCGA-49-4494-01 11 7059986 7059986 G T NLRP14 Missense_Mutation p.D57Y 0.14 deleterious(0.03) probably_damaging(0.951) TCGA-49-4494-01 11 89088203 89088203 G A NOX4 Nonsense_Mutation p.R382* 0.09 TCGA-49-4494-01 12 116413011 116413011 C A MED13L Missense_Mutation p.G1899V 0.15 deleterious(0) probably_damaging(0.995) TCGA-49-4494-01 12 118650764 118650764 C A TAOK3 Missense_Mutation p.L258F 0.29 deleterious(0) probably_damaging(0.954) TCGA-49-4494-01 12 1741938 1741938 C A WNT5B Nonsense_Mutation p.Y65* 0.22 TCGA-49-4494-01 12 22012531 22012531 T C ABCC9 Missense_Mutation p.I832V 0.22 tolerated(0.54) benign(0.028) TCGA-49-4494-01 12 23818455 23818455 G A SOX5 Missense_Mutation p.P285L 0.23 tolerated(0.05) possibly_damaging(0.859) TCGA-49-4494-01 12 53215788 53215788 C A KRT79 Silent p.G492G 0.18 TCGA-49-4494-01 12 53607014 53607014 C T RARG Silent p.L344L 0.14 TCGA-49-4494-01 12 85286003 85286003 C A SLC6A15 5'UTR 0.29 TCGA-49-4494-01 12 86268247 86268247 G T NTS Silent p.L22L 0.24 TCGA-49-4494-01 12 8976459 8976459 C G A2ML1 Silent p.L130L 0.16 TCGA-49-4494-01 13 102375188 102375188 G T FGF14 Missense_Mutation p.T251K 0.28 deleterious_low_confidence(0) benign(0.017) TCGA-49-4494-01 13 33092138 33092138 C G N4BP2L2 Missense_Mutation p.R89T 0.27 deleterious(0) probably_damaging(0.998) TCGA-49-4494-01 13 72440283 72440283 C T DACH1 Missense_Mutation p.E209K 0.24 probably_damaging(0.96) TCGA-49-4494-01 13 96515938 96515938 C A UGGT2 Missense_Mutation p.D1197Y 0.10 deleterious(0) probably_damaging(0.929) TCGA-49-4494-01 14 20296431 20296431 A T OR4N2 Missense_Mutation p.H275L 0.12 deleterious(0.02) probably_damaging(0.939) TCGA-49-4494-01 14 20443788 20443788 G T OR4K15 Silent p.V37V 0.22 TCGA-49-4494-01 14 45373686 45373686 G A C14orf28 Missense_Mutation p.E235K 0.07 deleterious_low_confidence(0.04) benign(0.017) TCGA-49-4494-01 14 52735015 52735015 G T PTGDR Silent p.L161L 0.20 TCGA-49-4494-01 14 70712902 70712902 G T ADAM21P1 RNA 0.19 TCGA-49-4494-01 14 92074715 92074715 C A CATSPERB Missense_Mutation p.A878S 0.16 tolerated(0.17) probably_damaging(0.996) TCGA-49-4494-01 14 93686679 93686679 C T UBR7 Nonsense_Mutation p.Q349* 0.18 TCGA-49-4494-01 15 101601410 101601410 A T LRRK1 Missense_Mutation p.M1572L 0.19 tolerated(0.84) benign(0) TCGA-49-4494-01 15 24921511 24921511 C A NPAP1 Missense_Mutation p.P166Q 0.18 tolerated(0.31) benign(0.071) TCGA-49-4494-01 15 25328007 25328007 A T SNORD116-18 5'Flank 0.19 TCGA-49-4494-01 15 27128544 27128544 G T GABRA5 Missense_Mutation p.G113W 0.29 deleterious(0) probably_damaging(1) TCGA-49-4494-01 15 28459224 28459224 C A HERC2 Missense_Mutation p.G2185W 0.27 possibly_damaging(0.491) TCGA-49-4494-01 15 42042148 42042148 G T MGA Nonsense_Mutation p.E2115* 0.19 TCGA-49-4494-01 15 50264909 50264909 A T ATP8B4 Silent p.P371P 0.23 TCGA-49-4494-01 15 74559018 74559018 G C CCDC33 Splice_Site p.X107_splice 0.20 TCGA-49-4494-01 15 79088964 79088964 C A ADAMTS7 Missense_Mutation p.V263F 0.20 deleterious(0) probably_damaging(0.992) TCGA-49-4494-01 15 85327613 85327613 G A ZNF592 Silent p.A569A 0.16 TCGA-49-4494-01 15 87217502 87217502 A G AGBL1 Splice_Site p.X974_splice 0.22 TCGA-49-4494-01 16 49671380 49671380 C G ZNF423 Missense_Mutation p.E561D 0.25 tolerated(0.22) probably_damaging(0.992) TCGA-49-4494-01 16 61761098 61761098 C A CDH8 Missense_Mutation p.R479L 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-49-4494-01 16 69148656 69148656 A T HAS3 Silent p.S383S 0.31 TCGA-49-4494-01 16 69726307 69726307 G T NFAT5 Missense_Mutation p.S860I 0.27 benign(0.229) TCGA-49-4494-01 16 81410934 81410934 G C GAN Splice_Site p.X538_splice 0.13 TCGA-49-4494-01 16 89294225 89294225 G T ZNF778 Missense_Mutation p.C482F 0.15 deleterious(0) probably_damaging(0.997) TCGA-49-4494-01 17 10355258 10355258 C A MYH4 Missense_Mutation p.K1246N 0.27 deleterious(0) possibly_damaging(0.697) TCGA-49-4494-01 17 11593391 11593391 G T DNAH9 Missense_Mutation p.D1418Y 0.15 probably_damaging(0.981) TCGA-49-4494-01 17 30611731 30611731 G A RHBDL3 Silent p.L63L 0.21 TCGA-49-4494-01 17 34883509 34883509 C A MYO19 Missense_Mutation p.R58L 0.18 deleterious(0) probably_damaging(0.999) TCGA-49-4494-01 17 34964761 34964761 A G MRM1 Silent p.Q324Q 0.20 TCGA-49-4494-01 17 3721736 3721736 G C C17orf85 Silent p.L377L 0.20 TCGA-49-4494-01 17 40720536 40720536 A G MLX Missense_Mutation p.N97S 0.20 tolerated(0.26) possibly_damaging(0.534) TCGA-49-4494-01 17 64785039 64785039 G T PRKCA Missense_Mutation p.R599M 0.23 tolerated(0.2) benign(0.006) TCGA-49-4494-01 17 64785040 64785040 G T PRKCA Missense_Mutation p.R599S 0.23 tolerated(0.37) benign(0.006) TCGA-49-4494-01 17 7330250 7330250 C T C17orf74 Missense_Mutation p.R314W 0.17 tolerated(0.09) benign(0) TCGA-49-4494-01 17 73836332 73836332 G A UNC13D Missense_Mutation p.L278F 0.17 deleterious(0) probably_damaging(0.999) TCGA-49-4494-01 17 73887248 73887248 C A TRIM65 Missense_Mutation p.R389L 0.14 deleterious(0.01) possibly_damaging(0.676) TCGA-49-4494-01 18 22902131 22902131 C - ZNF521 Frame_Shift_Del p.D21Tfs*9 0.15 TCGA-49-4494-01 18 34854501 34854501 G A CELF4 Intron 0.30 TCGA-49-4494-01 18 44027602 44027602 C A RNF165 Missense_Mutation p.L188I 0.23 tolerated(0.22) benign(0.027) TCGA-49-4494-01 19 1046335 1046335 C A ABCA7 Missense_Mutation p.L518I 0.09 tolerated(0.36) possibly_damaging(0.713) TCGA-49-4494-01 19 14857057 14857057 G A EMR2 Missense_Mutation p.L724F 0.20 deleterious(0.03) possibly_damaging(0.624) TCGA-49-4494-01 19 15918047 15918047 C A OR10H1 Missense_Mutation p.Q267H 0.30 tolerated(1) benign(0.002) TCGA-49-4494-01 19 17927620 17927620 C A INSL3 3'UTR 0.27 TCGA-49-4494-01 19 17994525 17994525 C T SLC5A5 Silent p.P426P 0.15 TCGA-49-4494-01 19 18121164 18121164 G C ARRDC2 Missense_Mutation p.E337Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-49-4494-01 19 18888001 18888001 A T CRTC1 Missense_Mutation p.S588C 0.19 deleterious(0) probably_damaging(0.959) TCGA-49-4494-01 19 19655351 19655351 C A CILP2 Missense_Mutation p.A666D 0.41 tolerated(1) benign(0.001) TCGA-49-4494-01 19 20003573 20003576 ACCC TCG ZNF253 3'UTR 0.19 TCGA-49-4494-01 19 31025803 31025803 G T ZNF536 Silent p.L740L 0.23 TCGA-49-4494-01 19 3281249 3281249 C T CELF5 Missense_Mutation p.T219M 0.13 tolerated(0.05) probably_damaging(0.948) TCGA-49-4494-01 19 34706112 34706112 G T LSM14A Missense_Mutation p.A208S 0.28 tolerated(0.28) benign(0.007) TCGA-49-4494-01 19 36832235 36832235 C G ZFP14 Missense_Mutation p.V165L 0.21 tolerated(0.08) benign(0.03) TCGA-49-4494-01 19 4298087 4298087 G T TMIGD2 Missense_Mutation p.P101H 0.22 tolerated(0.62) possibly_damaging(0.685) TCGA-49-4494-01 19 43233410 43233410 C T PSG3 Missense_Mutation p.G370R 0.21 deleterious(0.03) benign(0.434) TCGA-49-4494-01 19 45992753 45992753 C T RTN2 Silent p.L364L 0.24 TCGA-49-4494-01 19 51628373 51628373 C A SIGLEC9 Missense_Mutation p.H48N 0.23 tolerated(0.55) benign(0.003) TCGA-49-4494-01 19 51994930 51994930 C T SIGLEC12 Missense_Mutation p.G585S 0.27 tolerated(0.72) benign(0.061) TCGA-49-4494-01 19 52876489 52876489 G T ZNF880 Silent p.L46L 0.15 TCGA-49-4494-01 19 53678823 53678823 C A ZNF665 Missense_Mutation p.G6V 0.18 tolerated(0.06) benign(0.128) TCGA-49-4494-01 19 56160839 56160839 G T CCDC106 Missense_Mutation p.A68S 0.18 tolerated(0.73) possibly_damaging(0.57) TCGA-49-4494-01 19 56363727 56363727 G T NLRP4 Splice_Site p.X94_splice 0.15 TCGA-49-4494-01 19 58439201 58439201 C T ZNF418 Silent p.G116G 0.08 TCGA-49-4494-01 19 6306640 6306640 C T ACER1 3'UTR 0.25 TCGA-49-4494-01 19 9076674 9076674 G T MUC16 Missense_Mutation p.S3591Y 0.14 unknown(0) TCGA-49-4494-01 19 9077673 9077673 C A MUC16 Missense_Mutation p.S3258I 0.21 unknown(0) TCGA-49-4494-01 1 103352528 103352528 C A COL11A1 Missense_Mutation p.A1565S 0.14 unknown(0) TCGA-49-4494-01 1 150967858 150967858 A G ANXA9 3'UTR 0.05 TCGA-49-4494-01 1 153028924 153028924 G A SPRR2A 3'UTR 0.18 TCGA-49-4494-01 1 158226831 158226831 G T CD1A Missense_Mutation p.G287V 0.30 deleterious(0) probably_damaging(1) TCGA-49-4494-01 1 159169659 159169659 G A CADM3 Silent p.R391R 0.08 TCGA-49-4494-01 1 161049685 161049685 C - PVRL4 Frame_Shift_Del p.G45Afs*35 0.26 TCGA-49-4494-01 1 179820234 179820234 C A TOR1AIP2 Missense_Mutation p.G100V 0.26 deleterious_low_confidence(0) possibly_damaging(0.867) TCGA-49-4494-01 1 181745281 181745281 C A CACNA1E Nonsense_Mutation p.Y1728* 0.13 TCGA-49-4494-01 1 181765801 181765801 C A CACNA1E Intron 0.19 TCGA-49-4494-01 1 197390454 197390454 G T CRB1 Missense_Mutation p.G499V 0.35 tolerated(0.25) possibly_damaging(0.703) TCGA-49-4494-01 1 201120964 201120964 C T TMEM9 Missense_Mutation p.R28Q 0.07 deleterious(0.03) probably_damaging(0.996) TCGA-49-4494-01 1 204237400 204237400 C T PLEKHA6 Missense_Mutation p.R48H 0.29 deleterious(0) possibly_damaging(0.739) TCGA-49-4494-01 1 228565299 228565299 A G OBSCN Missense_Mutation p.M8754V 0.15 possibly_damaging(0.557) TCGA-49-4494-01 1 231349585 231349585 G A TRIM67 Silent p.G716G 0.15 TCGA-49-4494-01 1 233344406 233344406 T A PCNXL2 Missense_Mutation p.R907S 0.20 deleterious(0) probably_damaging(0.999) TCGA-49-4494-01 1 237813354 237813354 G T RYR2 Missense_Mutation p.A2564S 0.26 probably_damaging(0.998) TCGA-49-4494-01 1 240371509 240371509 C A FMN2 Missense_Mutation p.P1133T 0.24 unknown(0) TCGA-49-4494-01 1 2939237 2939237 C A ACTRT2 Silent p.I329I 0.23 TCGA-49-4494-01 1 43829566 43829566 C A ELOVL1 3'UTR 0.16 TCGA-49-4494-01 1 79357333 79357333 G A ELTD1 Missense_Mutation p.T629I 0.18 tolerated(0.07) possibly_damaging(0.61) TCGA-49-4494-01 1 94342195 94342195 G A DNTTIP2 Silent p.N432N 0.20 TCGA-49-4494-01 20 45607270 45607270 G T EYA2 Intron 0.16 TCGA-49-4494-01 20 52781004 52781004 G T CYP24A1 Silent p.T277T 0.22 TCGA-49-4494-01 20 60575636 60575636 C A TAF4 Silent p.A876A 0.20 TCGA-49-4494-01 20 61296511 61296511 C T SLCO4A1 Intron 0.26 TCGA-49-4494-01 21 19713778 19713778 G T TMPRSS15 Missense_Mutation p.L506I 0.19 tolerated(0.42) benign(0.009) TCGA-49-4494-01 21 31311771 31311771 G T GRIK1 Missense_Mutation p.D16E 0.42 tolerated_low_confidence(0.52) benign(0.004) TCGA-49-4494-01 21 38593865 38593865 T A DSCR3 3'Flank 0.21 TCGA-49-4494-01 21 45970557 45970557 C A KRTAP10-2 3'UTR 0.23 TCGA-49-4494-01 21 45993646 45993646 G A KRTAP10-4 Missense_Mutation p.C4Y 0.18 deleterious(0) benign(0.066) TCGA-49-4494-01 22 17072423 17072423 G T CCT8L2 Missense_Mutation p.P340T 0.07 deleterious(0.05) probably_damaging(0.996) TCGA-49-4494-01 22 18301821 18301821 C A MICAL3 Missense_Mutation p.L1202F 0.15 benign(0.001) TCGA-49-4494-01 22 24964111 24964111 G T SNRPD3 Missense_Mutation p.G96C 0.24 deleterious(0.01) benign(0.215) TCGA-49-4494-01 22 26860631 26860631 C A HPS4 Missense_Mutation p.R322M 0.22 deleterious(0.03) possibly_damaging(0.717) TCGA-49-4494-01 22 37602771 37602771 C A SSTR3 Missense_Mutation p.G358W 0.28 tolerated(0.05) possibly_damaging(0.497) TCGA-49-4494-01 22 38822911 38822911 C T KCNJ4 Silent p.E409E 0.18 TCGA-49-4494-01 22 51012810 51012810 C T CPT1B Silent p.Q308Q 0.10 TCGA-49-4494-01 2 131519874 131519874 G C AMER3 Missense_Mutation p.G77R 0.16 deleterious(0.04) possibly_damaging(0.901) TCGA-49-4494-01 2 132021345 132021345 C G POTEE Missense_Mutation p.H773D 0.25 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-49-4494-01 2 136566318 136566318 G C LCT Missense_Mutation p.T1200R 0.17 deleterious(0) probably_damaging(1) TCGA-49-4494-01 2 141751656 141751656 C G LRP1B Missense_Mutation p.R851P 0.17 probably_damaging(0.944) TCGA-49-4494-01 2 148715893 148715893 C A ORC4 Nonsense_Mutation p.E121* 0.29 TCGA-49-4494-01 2 154801038 154801038 G T GALNT13 Missense_Mutation p.V10F 0.21 deleterious(0) possibly_damaging(0.553) TCGA-49-4494-01 2 175624091 175624091 G A CHRNA1 Nonsense_Mutation p.Q68* 0.19 TCGA-49-4494-01 2 179650354 179650354 C G TTN Missense_Mutation p.G829A 0.20 TCGA-49-4494-01 2 203686132 203686132 C T ICA1L Missense_Mutation p.G103D 0.22 deleterious(0) probably_damaging(0.991) TCGA-49-4494-01 2 211459298 211459298 C T CPS1 Missense_Mutation p.P417S 0.20 tolerated(0.12) probably_damaging(0.941) TCGA-49-4494-01 2 233785096 233785096 G A NGEF Silent p.L242L 0.07 TCGA-49-4494-01 2 30863299 30863299 G C LCLAT1 Missense_Mutation p.W353C 0.23 deleterious(0) probably_damaging(0.999) TCGA-49-4494-01 2 43801837 43801837 G A THADA Missense_Mutation p.T456M 0.22 tolerated(0.15) benign(0.007) TCGA-49-4494-01 2 44204416 44204416 C A LRPPRC Splice_Site p.X157_splice 0.23 TCGA-49-4494-01 2 50148973 50148973 C T NRXN1 3'UTR 0.30 TCGA-49-4494-01 2 77746912 77746912 G T LRRTM4 Missense_Mutation p.T28K 0.31 tolerated(0.15) benign(0.018) TCGA-49-4494-01 2 85571154 85571154 C A RETSAT Missense_Mutation p.V501F 0.19 deleterious(0.04) benign(0.009) TCGA-49-4494-01 3 101047372 101047372 T A SENP7 Silent p.L938L 0.16 TCGA-49-4494-01 3 122002643 122002643 C T CASR Silent p.I624I 0.19 TCGA-49-4494-01 3 142548567 142548567 G A PCOLCE2 Nonsense_Mutation p.Q278* 0.15 TCGA-49-4494-01 3 151127077 151127077 C A MED12L Missense_Mutation p.P1921H 0.15 tolerated_low_confidence(0.11) possibly_damaging(0.573) TCGA-49-4494-01 3 182897375 182897375 C T MCF2L2 Missense_Mutation p.E1071K 0.10 tolerated_low_confidence(0.17) benign(0.004) TCGA-49-4494-01 3 197707307 197707307 C T LMLN Silent p.T220T 0.22 TCGA-49-4494-01 3 33586292 33586292 G A CLASP2 Silent p.T1073T 0.26 TCGA-49-4494-01 3 48501913 48501913 G A ATRIP Missense_Mutation p.C487Y 0.22 tolerated(0.6) possibly_damaging(0.679) TCGA-49-4494-01 3 52257313 52257313 T G TLR9 Missense_Mutation p.N494T 0.18 tolerated(0.05) possibly_damaging(0.476) TCGA-49-4494-01 3 79639080 79639080 T A ROBO1 5'UTR 0.17 TCGA-49-4494-01 3 93624636 93624636 T A PROS1 Missense_Mutation p.D198V 0.23 tolerated(0.48) possibly_damaging(0.477) TCGA-49-4494-01 3 96706352 96706352 G T EPHA6 Missense_Mutation p.W210L 0.19 tolerated(0.08) probably_damaging(0.999) TCGA-49-4494-01 4 100340244 100340244 C A ADH7 Missense_Mutation p.G307V 0.44 deleterious(0.03) benign(0.279) TCGA-49-4494-01 4 170017740 170017740 C G SH3RF1 Missense_Mutation p.W866S 0.06 deleterious(0) probably_damaging(1) TCGA-49-4494-01 4 177608435 177608435 G A VEGFC Nonsense_Mutation p.Q351* 0.40 TCGA-49-4494-01 4 65274940 65274940 C A TECRL Missense_Mutation p.G44C 0.36 tolerated(0.12) benign(0.194) TCGA-49-4494-01 5 102522089 102522089 G T PPIP5K2 Missense_Mutation p.D1080Y 0.26 deleterious_low_confidence(0.01) benign(0.209) TCGA-49-4494-01 5 131008460 131008460 A G FNIP1 Silent p.D559D 0.08 TCGA-49-4494-01 5 131528655 131528655 C T P4HA2 3'UTR 0.17 TCGA-49-4494-01 5 131663013 131663013 T C SLC22A4 Missense_Mutation p.F290L 0.25 tolerated(0.2) benign(0.005) TCGA-49-4494-01 5 140182645 140182645 G A PCDHA3 Silent p.P621P 0.15 TCGA-49-4494-01 5 140503215 140503215 G A PCDHB4 Silent p.L545L 0.08 TCGA-49-4494-01 5 140711965 140711965 T A PCDHGA1 Missense_Mutation p.S572T 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-49-4494-01 5 14693081 14693081 C T FAM105B Missense_Mutation p.P328L 0.27 deleterious(0) probably_damaging(1) TCGA-49-4494-01 5 154181956 154181956 C G LARP1 Missense_Mutation p.I625M 0.05 tolerated(0.25) probably_damaging(0.999) TCGA-49-4494-01 5 178392687 178392687 G T ZNF454 Missense_Mutation p.A428S 0.14 tolerated(0.14) benign(0.022) TCGA-49-4494-01 5 33984697 33984697 G A SLC45A2 5'UTR 0.12 TCGA-49-4494-01 5 42719627 42719627 T A GHR 3'UTR 0.34 TCGA-49-4494-01 5 54320167 54320167 C - GZMK Frame_Shift_Del p.S8Lfs*5 0.19 TCGA-49-4494-01 5 63256504 63256504 C T HTR1A Missense_Mutation p.G348D 0.16 deleterious(0) probably_damaging(0.998) TCGA-49-4494-01 5 64081315 64081315 G T CWC27 Missense_Mutation p.G135V 0.15 deleterious(0) possibly_damaging(0.689) TCGA-49-4494-01 5 76028404 76028404 A T F2R Silent p.P118P 0.19 TCGA-49-4494-01 6 13283719 13283719 C T TBC1D7 Intron 0.16 TCGA-49-4494-01 6 161071502 161071502 T G LPA Missense_Mutation p.Q26P 0.34 tolerated(0.26) probably_damaging(0.997) TCGA-49-4494-01 6 17849677 17849677 G T KIF13A Missense_Mutation p.A254E 0.16 deleterious(0) probably_damaging(1) TCGA-49-4494-01 6 25921560 25921560 G T SLC17A2 Silent p.I107I 0.36 TCGA-49-4494-01 6 28872311 28872311 C A TRIM27 Missense_Mutation p.V360F 0.30 deleterious(0) probably_damaging(0.964) TCGA-49-4494-01 6 32370728 32370728 C A BTNL2 Silent p.S231S 0.32 TCGA-49-4494-01 7 100086913 100086913 G T NYAP1 Silent p.G523G 0.43 TCGA-49-4494-01 7 100212862 100212862 G A MOSPD3 3'UTR 0.07 TCGA-49-4494-01 7 100675478 100675478 G C MUC17 Missense_Mutation p.E261Q 0.03 benign(0.255) TCGA-49-4494-01 7 100677522 100677522 G C MUC17 Missense_Mutation p.R942T 0.05 benign(0.001) TCGA-49-4494-01 7 103159823 103159823 G T RELN Silent p.G2603G 0.43 TCGA-49-4494-01 7 103205942 103205942 G T RELN Missense_Mutation p.Q1665K 0.17 deleterious(0) probably_damaging(0.974) TCGA-49-4494-01 7 103844634 103844634 T C ORC5 Missense_Mutation p.S41G 0.66 deleterious(0) possibly_damaging(0.814) TCGA-49-4494-01 7 129909536 129909536 C G CPA2 Missense_Mutation p.P61A 0.43 tolerated(0.21) benign(0.025) TCGA-49-4494-01 7 150164352 150164352 T C GIMAP8 Missense_Mutation p.V189A 0.10 tolerated(0.23) possibly_damaging(0.844) TCGA-49-4494-01 7 151372540 151372540 A T PRKAG2 Missense_Mutation p.L217Q 0.42 tolerated(0.14) benign(0.004) TCGA-49-4494-01 7 20778656 20778656 T A ABCB5 Missense_Mutation p.V973D 0.44 deleterious(0) benign(0.438) TCGA-49-4494-01 7 34118587 34118587 G A BMPER Silent p.S399S 0.14 TCGA-49-4494-01 7 43917045 43917045 G A URGCP Missense_Mutation p.R673C 0.35 deleterious(0.02) benign(0.022) TCGA-49-4494-01 7 55249071 55249071 C T EGFR Missense_Mutation p.T790M 0.51 deleterious(0) probably_damaging(1) TCGA-49-4494-01 7 55259515 55259515 T G EGFR Missense_Mutation p.L858R 0.44 deleterious(0) probably_damaging(1) TCGA-49-4494-01 7 63982254 63982254 G A ZNF680 Missense_Mutation p.P293L 0.11 tolerated(0.05) benign(0.088) TCGA-49-4494-01 7 72744332 72744332 G T FKBP6 Missense_Mutation p.D149Y 0.49 deleterious(0) probably_damaging(0.996) TCGA-49-4494-01 7 7477083 7477083 C T COL28A1 Missense_Mutation p.G578D 0.48 deleterious(0.02) probably_damaging(1) TCGA-49-4494-01 7 7477086 7477086 G A COL28A1 Missense_Mutation p.P577L 0.49 tolerated(0.05) possibly_damaging(0.517) TCGA-49-4494-01 7 87436744 87436744 C T RUNDC3B Missense_Mutation p.T355I 0.12 tolerated(0.14) benign(0.074) TCGA-49-4494-01 7 87780637 87780637 T G ADAM22 Splice_Site p.X561_splice 0.15 TCGA-49-4494-01 7 88965549 88965549 G T ZNF804B Missense_Mutation p.V1085L 0.46 deleterious(0.02) benign(0.327) TCGA-49-4494-01 8 141595310 141595310 C G AGO2 Missense_Mutation p.Q41H 0.18 deleterious(0.02) benign(0.163) TCGA-49-4494-01 8 28600642 28600642 A G EXTL3 Missense_Mutation p.I821V 0.24 tolerated(0.18) possibly_damaging(0.882) TCGA-49-4494-01 8 2944669 2944669 C G CSMD1 Missense_Mutation p.R2475P 0.25 possibly_damaging(0.737) TCGA-49-4494-01 8 30703484 30703484 A T TEX15 Missense_Mutation p.L1017H 0.15 deleterious(0) probably_damaging(0.995) TCGA-49-4494-01 8 3265422 3265422 G T CSMD1 Silent p.T690T 0.27 TCGA-49-4494-01 8 41791382 41791382 C A KAT6A Silent p.A1452A 0.12 TCGA-49-4494-01 8 73480430 73480430 G T KCNB2 Missense_Mutation p.R154L 0.17 deleterious(0) benign(0.388) TCGA-49-4494-01 8 88885425 88885425 C A DCAF4L2 Missense_Mutation p.G259C 0.21 tolerated(0.19) benign(0.068) TCGA-49-4494-01 8 97270732 97270732 T A MTERFD1 Missense_Mutation p.T63S 0.18 tolerated(0.27) benign(0.003) TCGA-49-4494-01 9 34977191 34977191 C A KIAA1045 Missense_Mutation p.H321N 0.30 tolerated(0.25) benign(0.003) TCGA-49-4494-01 9 5185531 5185531 G T INSL6 Missense_Mutation p.S24R 0.42 tolerated(0.28) benign(0.028) TCGA-49-4494-01 X 101382384 101382384 G T TCEAL2 Missense_Mutation p.M194I 0.36 tolerated(0.08) benign(0.072) TCGA-49-4494-01 X 102979534 102979534 G T GLRA4 Missense_Mutation p.P69T 0.22 tolerated(0.05) probably_damaging(0.954) TCGA-49-4494-01 X 125299021 125299021 G T DCAF12L2 Missense_Mutation p.S296Y 0.43 deleterious(0.01) benign(0.439) TCGA-49-4494-01 X 125299047 125299047 G T DCAF12L2 Missense_Mutation p.H287Q 0.39 deleterious(0.02) possibly_damaging(0.677) TCGA-49-4494-01 X 151935380 151935381 CG A MAGEA3 Frame_Shift_Del p.G263Afs*22 0.35 TCGA-49-4494-01 X 35993959 35993959 G T CXorf22 Missense_Mutation p.C881F 0.47 tolerated(0.45) benign(0.005) TCGA-49-4494-01 X 47034492 47034492 G T RBM10 Splice_Site p.X192_splice 0.47 TCGA-49-4494-01 X 53114870 53114870 A C TSPYL2 Silent p.A432A 0.43 TCGA-49-4494-01 X 57162470 57162470 G C SPIN2A Silent p.R187R 0.24 TCGA-49-4494-01 X 73064626 73064626 G T XIST RNA 0.32 TCGA-49-4501-01 10 102677018 102677018 G A FAM178A Silent p.Q292Q 0.13 TCGA-49-4501-01 10 12940429 12940429 T C CCDC3 Missense_Mutation p.Y267C 0.56 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-49-4501-01 10 69959230 69959230 C T MYPN Silent p.L1131L 0.06 TCGA-49-4501-01 10 99211511 99211511 C T ZDHHC16 Missense_Mutation p.R27C 0.14 deleterious(0.02) probably_damaging(0.994) TCGA-49-4501-01 11 123909325 123909325 C T OR10G7 Silent p.P128P 0.04 TCGA-49-4501-01 11 48181542 48181542 G T PTPRJ Missense_Mutation p.A1167S 0.32 deleterious(0.04) possibly_damaging(0.832) TCGA-49-4501-01 11 57449913 57449913 T A ZDHHC5 Missense_Mutation p.Y42N 0.16 tolerated(0.54) benign(0.001) TCGA-49-4501-01 11 60070165 60070165 G T MS4A4A Missense_Mutation p.C174F 0.03 deleterious(0.04) possibly_damaging(0.516) TCGA-49-4501-01 11 70318954 70318954 G A SHANK2 3'UTR 0.04 TCGA-49-4501-01 11 94230270 94230270 A G ANKRD49 Intron 0.13 TCGA-49-4501-01 12 113729448 113729448 G A TPCN1 Missense_Mutation p.R737H 0.19 deleterious(0.04) probably_damaging(0.998) TCGA-49-4501-01 12 120128147 120128147 G A CIT Missense_Mutation p.H1999Y 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.843) TCGA-49-4501-01 12 62783684 62783684 C A USP15 Nonsense_Mutation p.S587* 0.08 TCGA-49-4501-01 13 25905666 25905666 A G NUPL1 Missense_Mutation p.T469A 0.43 tolerated(0.16) probably_damaging(0.994) TCGA-49-4501-01 13 33629297 33629297 C T KL Silent p.L482L 0.04 TCGA-49-4501-01 13 78176221 78176221 G A SCEL Silent p.P313P 0.14 TCGA-49-4501-01 14 106518542 106518542 A C IGHV3-7 Missense_Mutation p.I70R 0.04 deleterious_low_confidence(0) possibly_damaging(0.461) TCGA-49-4501-01 14 65239968 65239968 C A SPTB Silent p.P1716P 0.06 TCGA-49-4501-01 14 94173127 94173127 G A UNC79 Silent p.P2418P 0.08 TCGA-49-4501-01 15 64263636 64263636 G A DAPK2 Missense_Mutation p.H147Y 0.33 deleterious(0) probably_damaging(1) TCGA-49-4501-01 16 28509145 28509145 G A APOBR Missense_Mutation p.R928Q 0.12 tolerated(1) benign(0) TCGA-49-4501-01 17 10538773 10538773 C T MYH3 Silent p.A1361A 0.06 TCGA-49-4501-01 17 18194306 18194307 - CGA TOP3A In_Frame_Ins p.R439dup 0.29 TCGA-49-4501-01 17 61957888 61957888 G A GH2 Missense_Mutation p.H234Y 0.05 deleterious_low_confidence(0) benign(0.403) TCGA-49-4501-01 17 76497744 76497744 T G DNAH17-AS1 3'UTR 0.37 TCGA-49-4501-01 18 72250879 72250879 C T CNDP1 Silent p.S464S 0.04 TCGA-49-4501-01 19 32930060 32930060 G A DPY19L3 Silent p.E213E 0.05 TCGA-49-4501-01 19 32930116 32930116 G C DPY19L3 Missense_Mutation p.R232T 0.05 deleterious(0) possibly_damaging(0.845) TCGA-49-4501-01 19 37642866 37642866 G A ZNF585A Silent p.G590G 0.22 TCGA-49-4501-01 19 38903681 38903681 G A RASGRP4 Silent p.F475F 0.09 TCGA-49-4501-01 19 41627459 41627459 G A CYP2F1 Missense_Mutation p.R194H 0.11 tolerated(0.11) benign(0.198) TCGA-49-4501-01 19 52716329 52716329 G A PPP2R1A Missense_Mutation p.R258H 0.09 deleterious(0.02) probably_damaging(0.97) TCGA-49-4501-01 1 109838959 109838959 C T MYBPHL Missense_Mutation p.R255Q 0.06 tolerated(0.09) benign(0.149) TCGA-49-4501-01 1 117944999 117945019 TAGGAATACGTGGTGGAGACC - MAN1A2 In_Frame_Del p.V165_P172delinsA 0.21 TCGA-49-4501-01 1 155979226 155979226 G C SSR2 3'UTR 0.38 TCGA-49-4501-01 1 16260282 16260282 C T SPEN Missense_Mutation p.P2516L 0.21 benign(0.315) TCGA-49-4501-01 1 180775220 180775220 G A XPR1 Missense_Mutation p.R157Q 0.06 deleterious(0.01) probably_damaging(0.993) TCGA-49-4501-01 1 46120493 46120493 G A GPBP1L1 Missense_Mutation p.H67Y 0.26 tolerated(0.16) benign(0.405) TCGA-49-4501-01 1 57409395 57409395 C T C8B Missense_Mutation p.C403Y 0.04 deleterious(0.03) probably_damaging(0.997) TCGA-49-4501-01 1 75038612 75038612 A T C1orf173 Missense_Mutation p.S928T 0.05 tolerated(0.25) benign(0.002) TCGA-49-4501-01 21 46000423 46000423 G A KRTAP10-5 Silent p.S11S 0.09 TCGA-49-4501-01 2 187702037 187702037 A G ZSWIM2 Missense_Mutation p.Y247H 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-49-4501-01 2 216964796 216964796 C T TMEM169 Missense_Mutation p.T142M 0.14 tolerated(0.08) benign(0.008) TCGA-49-4501-01 2 219301981 219301981 C T VIL1 Silent p.H702H 0.05 TCGA-49-4501-01 2 70164438 70164438 G A MXD1 Silent p.K130K 0.14 TCGA-49-4501-01 2 74594501 74594501 A G DCTN1 Missense_Mutation p.M744T 0.11 tolerated(0.54) benign(0.009) TCGA-49-4501-01 3 122642572 122642572 G A SEMA5B Silent p.C442C 0.24 TCGA-49-4501-01 3 27472895 27472895 G A SLC4A7 Silent p.A339A 0.13 TCGA-49-4501-01 3 52429597 52429597 T C DNAH1 Missense_Mutation p.I3721T 0.19 benign(0.001) TCGA-49-4501-01 3 64582594 64582594 T C ADAMTS9 Missense_Mutation p.N1364S 0.08 tolerated(1) benign(0.002) TCGA-49-4501-01 4 104041347 104041347 A T CENPE Missense_Mutation p.N2429K 0.19 possibly_damaging(0.621) TCGA-49-4501-01 4 187131662 187131662 C T CYP4V2 Missense_Mutation p.S482L 0.13 deleterious(0) possibly_damaging(0.686) TCGA-49-4501-01 5 140167367 140167367 C T PCDHA1 Missense_Mutation p.R498W 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.496) TCGA-49-4501-01 5 140236799 140236799 C T PCDHA10 Missense_Mutation p.T389M 0.04 tolerated_low_confidence(0.1) benign(0.378) TCGA-49-4501-01 5 146991890 146991890 T C JAKMIP2 Silent p.Q797Q 0.16 TCGA-49-4501-01 5 156592963 156592963 C A FAM71B Missense_Mutation p.G73C 0.07 tolerated(0.16) benign(0.32) TCGA-49-4501-01 6 132203597 132203597 G A ENPP1 Missense_Mutation p.G738E 0.24 deleterious(0.02) possibly_damaging(0.558) TCGA-49-4501-01 6 151672021 151672021 G C AKAP12 Missense_Mutation p.G832A 0.20 tolerated(0.05) probably_damaging(0.999) TCGA-49-4501-01 6 161781119 161781119 C A PARK2 Splice_Site p.X429_splice 0.10 TCGA-49-4501-01 6 44144683 44144683 C T CAPN11 Silent p.Y395Y 0.11 TCGA-49-4501-01 7 2290710 2290710 T C NUDT1 3'UTR 0.13 TCGA-49-4501-01 7 27203329 27203329 C T HOXA9 Missense_Mutation p.E238K 0.11 deleterious(0) probably_damaging(0.989) TCGA-49-4501-01 7 2983995 2983995 G A CARD11 Missense_Mutation p.R179W 0.06 deleterious(0) probably_damaging(0.998) TCGA-49-4501-01 7 53104271 53104271 T A POM121L12 3'UTR 0.19 TCGA-49-4501-01 7 55242466 55242480 GAATTAAGAGAAGCA - EGFR In_Frame_Del p.E746_A750del 0.27 TCGA-49-4501-01 9 111668633 111668633 C T IKBKAP Silent p.L531L 0.18 TCGA-49-4501-01 9 125273234 125273234 G A OR1J2 Missense_Mutation p.D52N 0.16 deleterious_low_confidence(0.02) benign(0.32) TCGA-49-4501-01 9 127765392 127765392 C A SCAI Splice_Site p.X378_splice 0.17 TCGA-49-4501-01 9 2635511 2635511 G A VLDLR Silent p.T47T 0.04 TCGA-49-4501-01 9 34343338 34343338 G A NUDT2 Missense_Mutation p.R115H 0.15 deleterious(0.01) probably_damaging(0.911) TCGA-49-4501-01 X 138914391 138914391 C T ATP11C 5'UTR 0.23 TCGA-49-4501-01 X 155127856 155127856 G A VAMP7 Silent p.Q95Q 0.08 TCGA-49-4501-01 X 20031731 20031731 T G MAP7D2 Missense_Mutation p.I588L 0.05 deleterious(0) unknown(0) TCGA-49-4501-01 X 51645010 51645010 T A MAGED1 Missense_Mutation p.F830Y 0.21 deleterious_low_confidence(0) benign(0.294) TCGA-49-4501-01 X 76939965 76939965 G A ATRX Silent p.N261N 0.10 TCGA-49-4505-01 10 117885022 117885022 G T GFRA1 Silent p.A160A 0.15 TCGA-49-4505-01 10 118357673 118357673 G T PNLIPRP1 Missense_Mutation p.W270L 0.19 tolerated(0.06) benign(0.045) TCGA-49-4505-01 10 129901424 129901424 C A MKI67 Missense_Mutation p.D2894Y 0.15 deleterious(0.01) probably_damaging(0.972) TCGA-49-4505-01 10 17130324 17130324 C A CUBN Missense_Mutation p.G596C 0.18 deleterious(0) probably_damaging(0.976) TCGA-49-4505-01 10 33214878 33214878 A G ITGB1 Missense_Mutation p.V236A 0.13 deleterious(0) probably_damaging(0.987) TCGA-49-4505-01 10 37414856 37414856 C A ANKRD30A 5'UTR 0.20 TCGA-49-4505-01 10 43602005 43602005 C A RET Missense_Mutation p.T350N 0.10 deleterious(0.02) benign(0.425) TCGA-49-4505-01 10 45938491 45938491 C T ALOX5 Silent p.N426N 0.05 TCGA-49-4505-01 10 55569185 55569185 C G PCDH15 Missense_Mutation p.R476T 0.33 deleterious_low_confidence(0) unknown(0) TCGA-49-4505-01 10 55626616 55626616 G T PCDH15 Missense_Mutation p.A1168D 0.37 deleterious(0) probably_damaging(0.998) TCGA-49-4505-01 10 61022292 61022292 C A FAM13C Missense_Mutation p.G380C 0.34 deleterious(0) probably_damaging(1) TCGA-49-4505-01 10 73053228 73053228 G A UNC5B Silent p.L613L 0.23 TCGA-49-4505-01 10 97158866 97158866 C G SORBS1 Missense_Mutation p.E356Q 0.28 deleterious(0.01) possibly_damaging(0.501) TCGA-49-4505-01 11 13514010 13514010 C T PTH Missense_Mutation p.S97N 0.20 deleterious(0.05) probably_damaging(0.99) TCGA-49-4505-01 11 14316111 14316111 T C RRAS2 Missense_Mutation p.Y105C 0.19 tolerated(0.09) possibly_damaging(0.845) TCGA-49-4505-01 11 24759849 24759849 G T LUZP2 Splice_Site p.X111_splice 0.28 TCGA-49-4505-01 11 28116239 28116239 T C KIF18A Missense_Mutation p.D145G 0.19 deleterious(0) possibly_damaging(0.741) TCGA-49-4505-01 11 32414287 32414287 G T WT1 Missense_Mutation p.Q422K 0.26 tolerated_low_confidence(0.05) probably_damaging(0.978) TCGA-49-4505-01 11 4824745 4824746 - T OR52R1 Frame_Shift_Ins p.M289Nfs*10 0.17 TCGA-49-4505-01 11 5068622 5068622 C T OR52J3 Silent p.N289N 0.26 TCGA-49-4505-01 11 5474954 5474954 C A OR51I2 Missense_Mutation p.P79H 0.21 deleterious(0) probably_damaging(0.999) TCGA-49-4505-01 11 55135556 55135556 C T OR4A15 Missense_Mutation p.T66M 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.792) TCGA-49-4505-01 11 55798578 55798578 C A OR5AS1 Silent p.I228I 0.29 TCGA-49-4505-01 11 56143843 56143843 C A OR8U1 Silent p.V248V 0.25 TCGA-49-4505-01 11 58125640 58125640 C T OR5B17 Silent p.K301K 0.26 TCGA-49-4505-01 11 58189942 58189942 A C OR5B2 Missense_Mutation p.S265A 0.18 deleterious_low_confidence(0.04) benign(0.4) TCGA-49-4505-01 11 59626664 59626664 T C TCN1 Silent p.E211E 0.15 TCGA-49-4505-01 11 60163969 60163969 G T MS4A14 5'UTR 0.28 TCGA-49-4505-01 11 60183087 60183087 C A MS4A14 Missense_Mutation p.P249T 0.09 deleterious(0.01) possibly_damaging(0.614) TCGA-49-4505-01 11 6129250 6129250 C A OR56B4 Missense_Mutation p.T81N 0.17 deleterious(0.02) probably_damaging(0.992) TCGA-49-4505-01 11 65272124 65272124 T C MALAT1 RNA 0.28 TCGA-49-4505-01 11 65562860 65562860 G T OVOL1 3'UTR 0.56 TCGA-49-4505-01 11 71276953 71276953 G T KRTAP5-10 Missense_Mutation p.C107F 0.32 unknown(0) TCGA-49-4505-01 11 88300589 88300589 G T GRM5 Nonsense_Mutation p.C754* 0.34 TCGA-49-4505-01 11 92613965 92613965 C T FAT3 Missense_Mutation p.P4066S 0.35 probably_damaging(0.999) TCGA-49-4505-01 11 95583771 95583771 C T MTMR2 Missense_Mutation p.R266H 0.16 deleterious(0.02) possibly_damaging(0.88) TCGA-49-4505-01 12 107914364 107914364 C A BTBD11 Silent p.T412T 0.15 TCGA-49-4505-01 12 124819067 124819067 C A NCOR2 Missense_Mutation p.V2170F 0.24 probably_damaging(0.995) TCGA-49-4505-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.31 deleterious(0.04) probably_damaging(0.993) TCGA-49-4505-01 12 26377286 26377286 C T SSPN Missense_Mutation p.R114W 0.05 deleterious(0) possibly_damaging(0.828) TCGA-49-4505-01 12 26596496 26596496 T A ITPR2 Missense_Mutation p.N2144Y 0.34 deleterious(0) benign(0.036) TCGA-49-4505-01 12 5020508 5020508 C A KCNA1 5'UTR 0.15 TCGA-49-4505-01 12 52201252 52201252 C G SCN8A 3'UTR 0.36 TCGA-49-4505-01 12 57995329 57995329 T C PIP4K2C Silent p.T402T 0.19 TCGA-49-4505-01 12 58160901 58160901 G A CYP27B1 5'UTR 0.19 TCGA-49-4505-01 12 66221790 66221790 G T HMGA2 Missense_Mutation p.G41C 0.13 tolerated(0.1) benign(0.001) TCGA-49-4505-01 12 6909341 6909341 G T CD4 Missense_Mutation p.V13L 0.13 tolerated(0.3) benign(0.022) TCGA-49-4505-01 12 75875665 75875665 C A GLIPR1 Missense_Mutation p.Q76K 0.37 tolerated(1) benign(0.002) TCGA-49-4505-01 12 78400364 78400364 C A NAV3 Missense_Mutation p.T349N 0.38 deleterious(0.03) benign(0.1) TCGA-49-4505-01 12 97052038 97052063 CAGCTTCTGCTGAGAATACAGAAGTT - C12orf55 Frame_Shift_Del p.L1793Gfs*13 0.12 TCGA-49-4505-01 13 103460022 103460022 C T BIVM-ERCC5 Silent p.G107G 0.08 TCGA-49-4505-01 13 33635122 33635122 G A KL Missense_Mutation p.A636T 0.10 tolerated(1) benign(0.017) TCGA-49-4505-01 13 38225510 38225510 G A TRPC4 Silent p.F657F 0.22 TCGA-49-4505-01 13 70681814 70681814 T A KLHL1 Silent p.R6R 0.14 TCGA-49-4505-01 13 72134055 72134055 G A DACH1 Silent p.P446P 0.51 TCGA-49-4505-01 13 99566606 99566606 A - DOCK9 Frame_Shift_Del p.D312Efs*18 0.21 TCGA-49-4505-01 14 106208271 106208271 G A IGHG1 Missense_Mutation p.A210V 0.18 tolerated(0.25) possibly_damaging(0.706) TCGA-49-4505-01 14 19566042 19566042 A G POTEG Silent p.E362E 0.05 TCGA-49-4505-01 14 55625237 55625237 A T DLGAP5 Intron 0.35 TCGA-49-4505-01 14 75078524 75078524 T A LTBP2 Nonsense_Mutation p.R42* 0.16 TCGA-49-4505-01 14 94915055 94915055 A T SERPINA11 Nonsense_Mutation p.C19* 0.16 TCGA-49-4505-01 14 95556997 95556997 C A DICER1 Silent p.P1869P 0.32 TCGA-49-4505-01 15 101114244 101114244 C A LINS Missense_Mutation p.L278F 0.05 deleterious(0.02) possibly_damaging(0.849) TCGA-49-4505-01 15 50535205 50535205 T A HDC Splice_Site p.X415_splice 0.37 TCGA-49-4505-01 15 89402517 89402517 T C ACAN Missense_Mutation p.L2234P 0.18 deleterious(0.03) benign(0.225) TCGA-49-4505-01 16 11217633 11217633 G A CLEC16A Missense_Mutation p.R768H 0.22 deleterious(0) probably_damaging(0.999) TCGA-49-4505-01 16 20327355 20327355 G T GP2 Nonsense_Mutation p.S478* 0.30 TCGA-49-4505-01 16 2376065 2376065 C A ABCA3 Missense_Mutation p.A89S 0.22 tolerated(0.06) possibly_damaging(0.564) TCGA-49-4505-01 16 24582841 24582841 C A RBBP6 Missense_Mutation p.S1485Y 0.18 deleterious_low_confidence(0) unknown(0) TCGA-49-4505-01 16 27710904 27710904 A T KIAA0556 Missense_Mutation p.K388M 0.22 deleterious(0.02) benign(0.413) TCGA-49-4505-01 16 30035098 30035098 C T C16orf92 Missense_Mutation p.R61C 0.05 tolerated(0.18) benign(0.193) TCGA-49-4505-01 16 31283251 31283251 G C ITGAM Silent p.L214L 0.25 TCGA-49-4505-01 16 31926644 31926644 C G ZNF267 Silent p.V358V 0.22 TCGA-49-4505-01 16 55360397 55360397 C A IRX6 Silent p.G65G 0.06 TCGA-49-4505-01 16 55532290 55532290 C T MMP2 Nonsense_Mutation p.R567* 0.14 TCGA-49-4505-01 16 57318396 57318396 G C PLLP Silent p.A19A 0.17 TCGA-49-4505-01 16 68405509 68405509 G A SMPD3 Silent p.G192G 0.05 TCGA-49-4505-01 16 70517776 70517776 T C COG4 Missense_Mutation p.K603E 0.20 tolerated(0.29) possibly_damaging(0.69) TCGA-49-4505-01 16 77359897 77359897 C T ADAMTS18 Missense_Mutation p.R633H 0.10 deleterious(0.01) possibly_damaging(0.819) TCGA-49-4505-01 16 84270538 84270550 CTCAGTACGTCCT - KCNG4 Frame_Shift_Del p.E181Gfs*20 0.14 TCGA-49-4505-01 16 9857046 9857046 C T GRIN2A Missense_Mutation p.R1452H 0.08 tolerated(0.64) probably_damaging(0.924) TCGA-49-4505-01 17 10426663 10426663 G C MYH2 Missense_Mutation p.R1847G 0.16 deleterious(0) probably_damaging(0.933) TCGA-49-4505-01 17 37099079 37099079 C A FBXO47 Silent p.V345V 0.41 TCGA-49-4505-01 17 37565089 37565089 T C MED1 Missense_Mutation p.S1129G 0.15 tolerated_low_confidence(0.45) unknown(0) TCGA-49-4505-01 17 47075134 47075134 C T IGF2BP1 Silent p.L9L 0.18 TCGA-49-4505-01 17 47904793 47904793 G T KAT7 Missense_Mutation p.A589S 0.20 tolerated(0.66) benign(0.002) TCGA-49-4505-01 17 48604672 48604673 - ACCACAG MYCBPAP Frame_Shift_Ins p.E778Pfs*41 0.22 TCGA-49-4505-01 17 51901330 51901330 C T KIF2B Silent p.T312T 0.36 TCGA-49-4505-01 17 58236769 58236769 C T CA4 Missense_Mutation p.A308V 0.15 tolerated(0.26) possibly_damaging(0.483) TCGA-49-4505-01 17 61657205 61657205 G T DCAF7 Intron 0.11 TCGA-49-4505-01 17 7577108 7577108 C A TP53 Missense_Mutation p.C277F 0.48 deleterious(0) probably_damaging(0.949) TCGA-49-4505-01 18 19110322 19110322 A G ESCO1 Silent p.N835N 0.11 TCGA-49-4505-01 18 21513860 21513860 T A LAMA3 Silent p.S2941S 0.15 TCGA-49-4505-01 18 22932076 22932076 C T ZNF521 5'UTR 0.14 TCGA-49-4505-01 19 11569323 11569323 G T ELAVL3 Missense_Mutation p.S146Y 0.41 deleterious(0) probably_damaging(0.979) TCGA-49-4505-01 19 14591185 14591185 C A GIPC1 Missense_Mutation p.R196L 0.44 deleterious(0) benign(0.258) TCGA-49-4505-01 19 2276472 2276472 G T C19orf35 Missense_Mutation p.A210E 0.53 deleterious(0.01) possibly_damaging(0.728) TCGA-49-4505-01 19 38949877 38949877 C G RYR1 Silent p.S753S 0.41 TCGA-49-4505-01 19 3976626 3976626 C A EEF2 Missense_Mutation p.V835L 0.47 deleterious(0.03) benign(0.013) TCGA-49-4505-01 19 3976627 3976627 C A EEF2 Silent p.V834V 0.50 TCGA-49-4505-01 19 42399487 42399487 G A ARHGEF1 Missense_Mutation p.G330R 0.08 tolerated(0.06) probably_damaging(0.995) TCGA-49-4505-01 19 43441198 43441198 G T PSG7 Missense_Mutation p.Q11K 0.34 tolerated(0.26) benign(0.096) TCGA-49-4505-01 19 43523176 43523176 G T PSG11 Missense_Mutation p.S152Y 0.21 deleterious(0) probably_damaging(0.97) TCGA-49-4505-01 19 48244176 48244176 G T EHD2 Silent p.S373S 0.21 TCGA-49-4505-01 19 56539800 56539800 G C NLRP5 Missense_Mutation p.R734P 0.38 deleterious(0.01) possibly_damaging(0.693) TCGA-49-4505-01 1 153591308 153591308 G T S100A13 3'UTR 0.17 TCGA-49-4505-01 1 158747139 158747139 C A OR6N2 Missense_Mutation p.G96V 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-49-4505-01 1 16953697 16953697 C A CROCCP2 3'Flank 0.09 TCGA-49-4505-01 1 17603314 17603314 T C PADI3 Missense_Mutation p.F500L 0.32 tolerated(0.13) benign(0.006) TCGA-49-4505-01 1 17634768 17634768 C A PADI4 Silent p.A17A 0.22 TCGA-49-4505-01 1 183221613 183221613 G T NMNAT2 3'UTR 0.21 TCGA-49-4505-01 1 186121913 186121913 G T HMCN1 Silent p.R4976R 0.29 TCGA-49-4505-01 1 19181197 19181197 C A TAS1R2 Missense_Mutation p.R256L 0.13 deleterious(0.03) possibly_damaging(0.803) TCGA-49-4505-01 1 193029172 193029172 G T TROVE2 5'UTR 0.28 TCGA-49-4505-01 1 202287648 202287648 G T LGR6 Missense_Mutation p.M739I 0.18 deleterious(0.05) benign(0.026) TCGA-49-4505-01 1 202912952 202912952 T G ADIPOR1 Missense_Mutation p.I247L 0.24 tolerated(0.2) benign(0.029) TCGA-49-4505-01 1 204409332 204409332 C T PIK3C2B Missense_Mutation p.G1123S 0.05 deleterious(0.03) probably_damaging(1) TCGA-49-4505-01 1 210970995 210970995 G T KCNH1 Silent p.L590L 0.34 TCGA-49-4505-01 1 211449715 211449715 A T RCOR3 Missense_Mutation p.Q157H 0.20 deleterious(0) probably_damaging(0.996) TCGA-49-4505-01 1 216246606 216246606 C A USH2A Missense_Mutation p.R1870L 0.18 possibly_damaging(0.657) TCGA-49-4505-01 1 236891000 236891000 T A ACTN2 Missense_Mutation p.C187S 0.27 tolerated(0.08) benign(0.157) TCGA-49-4505-01 1 237777623 237777623 A G RYR2 Missense_Mutation p.E1732G 0.06 benign(0.33) TCGA-49-4505-01 1 237880547 237880547 G T RYR2 Missense_Mutation p.R3458L 0.24 benign(0.115) TCGA-49-4505-01 1 240979707 240979707 A G RGS7 Silent p.Y231Y 0.30 TCGA-49-4505-01 1 24434529 24434529 C T MYOM3 Missense_Mutation p.A66T 0.30 tolerated(0.12) benign(0.006) TCGA-49-4505-01 1 248201977 248201977 C A OR2L2 Missense_Mutation p.S136R 0.24 tolerated(0.09) benign(0.005) TCGA-49-4505-01 1 248637257 248637257 G T OR2T3 Silent p.T202T 0.42 TCGA-49-4505-01 1 40627052 40627052 C T RLF 5'UTR 0.33 TCGA-49-4505-01 1 75609600 75609600 A T LHX8 Missense_Mutation p.R227S 0.15 deleterious(0) probably_damaging(0.999) TCGA-49-4505-01 1 91816323 91816323 G T HFM1 Silent p.I726I 0.15 TCGA-49-4505-01 20 33338167 33338167 C A NCOA6 Missense_Mutation p.G611C 0.19 probably_damaging(0.956) TCGA-49-4505-01 20 4228878 4228878 C T ADRA1D Missense_Mutation p.E243K 0.23 deleterious(0.01) benign(0.108) TCGA-49-4505-01 20 45130940 45130940 C A ZNF334 Missense_Mutation p.E346D 0.19 tolerated(0.05) possibly_damaging(0.599) TCGA-49-4505-01 20 49218951 49218951 G A FAM65C Silent p.H435H 0.25 TCGA-49-4505-01 20 9457374 9457374 C A PLCB4 Missense_Mutation p.S1157Y 0.49 deleterious(0.04) possibly_damaging(0.667) TCGA-49-4505-01 21 37721643 37721643 T C MORC3 Missense_Mutation p.I347T 0.14 deleterious(0) possibly_damaging(0.645) TCGA-49-4505-01 21 44524456 44524456 G A U2AF1 Missense_Mutation p.S34F 0.26 deleterious(0) possibly_damaging(0.835) TCGA-49-4505-01 22 16287281 16287281 T A POTEH Missense_Mutation p.D202V 0.08 deleterious(0.03) probably_damaging(0.995) TCGA-49-4505-01 22 23630285 23630285 G T BCR Missense_Mutation p.S843I 0.20 deleterious(0.01) probably_damaging(0.928) TCGA-49-4505-01 22 24621594 24621594 C A GGT5 Missense_Mutation p.R419L 0.14 deleterious(0.04) possibly_damaging(0.564) TCGA-49-4505-01 22 32439311 32439311 C A SLC5A1 Silent p.R15R 0.24 TCGA-49-4505-01 22 35948123 35948123 G T RASD2 3'UTR 0.27 TCGA-49-4505-01 22 50192227 50192227 C G BRD1 Silent p.A588A 0.09 TCGA-49-4505-01 2 125671954 125671954 C A CNTNAP5 3'UTR 0.33 TCGA-49-4505-01 2 133540623 133540623 G T NCKAP5 Missense_Mutation p.S1254Y 0.21 deleterious(0) probably_damaging(1) TCGA-49-4505-01 2 152527651 152527651 G A NEB Silent p.G1464G 0.05 TCGA-49-4505-01 2 153575351 153575351 G T ARL6IP6 Silent p.S71S 0.10 TCGA-49-4505-01 2 162830770 162830770 T C SLC4A10 Silent p.S1057S 0.19 TCGA-49-4505-01 2 179577475 179577475 C T TTN Missense_Mutation p.V9093I 0.31 TCGA-49-4505-01 2 179614862 179614862 G A TTN Intron 0.04 TCGA-49-4505-01 2 179986618 179986618 G C SESTD1 Missense_Mutation p.L441V 0.20 tolerated(0.15) benign(0.007) TCGA-49-4505-01 2 183095827 183095827 G T PDE1A Missense_Mutation p.A166D 0.20 deleterious(0.02) benign(0.169) TCGA-49-4505-01 2 183597269 183597269 G - DNAJC10 Frame_Shift_Del 0.21 TCGA-49-4505-01 2 203927117 203927117 C A NBEAL1 Intron 0.21 TCGA-49-4505-01 2 206992595 206992595 G A NDUFS1 Nonsense_Mutation p.Q618* 0.29 TCGA-49-4505-01 2 210642106 210642106 G T UNC80 Missense_Mutation p.W141C 0.26 probably_damaging(0.982) TCGA-49-4505-01 2 233195486 233195486 G T DIS3L2 Missense_Mutation p.Q670H 0.28 deleterious(0) probably_damaging(0.997) TCGA-49-4505-01 2 32688372 32688372 C T BIRC6 Missense_Mutation p.H1622Y 0.10 probably_damaging(0.968) TCGA-49-4505-01 2 3391656 3391656 G T TRAPPC12 Missense_Mutation p.V88L 0.42 tolerated_low_confidence(1) benign(0) TCGA-49-4505-01 2 5833563 5833563 T A SOX11 Missense_Mutation p.L237Q 0.41 deleterious(0) benign(0.419) TCGA-49-4505-01 2 74166086 74166086 A G DGUOK Silent p.E64E 0.15 TCGA-49-4505-01 2 79365197 79365198 - A REG1P RNA 0.29 TCGA-49-4505-01 2 89326897 89326897 G T IGKV3-11 Missense_Mutation p.A39D 0.09 deleterious(0) benign(0.372) TCGA-49-4505-01 2 90212024 90212024 C A IGKV3D-11 Missense_Mutation p.A39D 0.28 deleterious(0) benign(0.176) TCGA-49-4505-01 3 108474545 108474545 G A RETNLB 3'UTR 0.16 TCGA-49-4505-01 3 120417347 120417347 G C RABL3 Missense_Mutation p.H153D 0.18 tolerated(0.8) benign(0.002) TCGA-49-4505-01 3 120876387 120876387 C G STXBP5L Missense_Mutation p.Q264E 0.33 deleterious(0) possibly_damaging(0.734) TCGA-49-4505-01 3 121355331 121355331 C T HCLS1 Missense_Mutation p.A191T 0.32 tolerated(0.07) possibly_damaging(0.787) TCGA-49-4505-01 3 147130409 147130409 C A ZIC1 Missense_Mutation p.L363I 0.16 tolerated(0.51) benign(0.031) TCGA-49-4505-01 3 14964604 14964604 G A FGD5 Missense_Mutation p.D1287N 0.08 tolerated(0.44) benign(0.252) TCGA-49-4505-01 3 154147302 154147302 A T GPR149 Missense_Mutation p.Y35N 0.12 deleterious(0.01) benign(0.071) TCGA-49-4505-01 3 164756867 164756867 G A SI Missense_Mutation p.S767F 0.12 deleterious(0) benign(0.108) TCGA-49-4505-01 3 169656275 169656275 G A SAMD7 Missense_Mutation p.R441Q 0.19 tolerated(1) benign(0.001) TCGA-49-4505-01 3 194062055 194062055 C T CPN2 Silent p.P459P 0.09 TCGA-49-4505-01 3 21478677 21478677 G T ZNF385D Missense_Mutation p.P153Q 0.17 deleterious(0.02) benign(0.001) TCGA-49-4505-01 3 38798230 38798230 C A SCN10A Missense_Mutation p.D409Y 0.18 deleterious(0.01) possibly_damaging(0.594) TCGA-49-4505-01 3 38835490 38835490 G A SCN10A Silent p.P4P 0.15 TCGA-49-4505-01 3 48614316 48614316 C T COL7A1 Splice_Site p.X1868_splice 0.19 TCGA-49-4505-01 3 48689456 48689456 G A CELSR3 Missense_Mutation p.S1926F 0.16 tolerated(0.05) benign(0.001) TCGA-49-4505-01 3 49723531 49723531 G T MST1 Missense_Mutation p.Q371K 0.07 deleterious(0.01) possibly_damaging(0.469) TCGA-49-4505-01 3 77089846 77089846 G A ROBO2 Intron 0.36 TCGA-49-4505-01 3 87311358 87311358 G T POU1F1 Missense_Mutation p.A182D 0.15 deleterious(0) probably_damaging(0.999) TCGA-49-4505-01 4 105412047 105412049 TCT - CXXC4 In_Frame_Del p.K304del 0.11 TCGA-49-4505-01 4 111480849 111480849 G T ENPEP Nonsense_Mutation p.E897* 0.18 TCGA-49-4505-01 4 114279055 114279055 C A ANK2 Missense_Mutation p.P3094Q 0.11 probably_damaging(1) TCGA-49-4505-01 4 1244973 1244973 G T CTBP1 5'Flank 0.26 TCGA-49-4505-01 4 126389833 126389833 G C FAT4 Silent p.R4022R 0.13 TCGA-49-4505-01 4 143033741 143033741 C G INPP4B Missense_Mutation p.V744L 0.18 deleterious(0) possibly_damaging(0.7) TCGA-49-4505-01 4 173734827 173734827 C A GALNTL6 Silent p.I292I 0.30 TCGA-49-4505-01 4 174450016 174450016 C T HAND2 Missense_Mutation p.R142H 0.08 deleterious(0) probably_damaging(0.997) TCGA-49-4505-01 4 178897064 178897064 T A LINC01098 Silent p.S89S 0.14 TCGA-49-4505-01 4 1902791 1902791 C T WHSC1 Missense_Mutation p.P137L 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-49-4505-01 4 25674768 25674768 A T SLC34A2 Missense_Mutation p.I370L 0.20 tolerated(0.32) benign(0.001) TCGA-49-4505-01 4 48038210 48038210 T G NIPAL1 3'UTR 0.16 TCGA-49-4505-01 4 55156545 55156545 G C PDGFRA Silent p.V982V 0.18 TCGA-49-4505-01 4 68699064 68699064 C G TMPRSS11D Missense_Mutation p.E184Q 0.05 tolerated(0.19) possibly_damaging(0.467) TCGA-49-4505-01 4 69433722 69433722 G T UGT2B17 Missense_Mutation p.L161M 0.15 tolerated(0.05) possibly_damaging(0.778) TCGA-49-4505-01 4 87730997 87730997 G A PTPN13 Missense_Mutation p.D2392N 0.15 tolerated(0.2) benign(0.039) TCGA-49-4505-01 4 944247 944261 GATTGCCGTCTACCT - TMEM175 In_Frame_Del p.I78_L82del 0.33 TCGA-49-4505-01 4 9784902 9784902 G A DRD5 Missense_Mutation p.A417T 0.19 tolerated(0.16) benign(0.017) TCGA-49-4505-01 5 11732279 11732279 G T CTNND2 Missense_Mutation p.T48N 0.10 deleterious(0) probably_damaging(0.968) TCGA-49-4505-01 5 147813274 147813274 A T FBXO38 Missense_Mutation p.D869V 0.20 deleterious(0) probably_damaging(0.999) TCGA-49-4505-01 5 154169891 154169891 C T LARP1 Missense_Mutation p.S71F 0.29 tolerated_low_confidence(0.06) probably_damaging(0.983) TCGA-49-4505-01 5 158595962 158595962 A C RNF145 Missense_Mutation p.F377C 0.05 deleterious(0) probably_damaging(1) TCGA-49-4505-01 5 15928116 15928116 G C FBXL7 Missense_Mutation p.G82A 0.05 tolerated(0.62) benign(0.001) TCGA-49-4505-01 5 168135055 168135055 G T SLIT3 Missense_Mutation p.P924T 0.05 deleterious(0) probably_damaging(0.999) TCGA-49-4505-01 5 175111019 175111019 G A HRH2 Silent p.G261G 0.04 TCGA-49-4505-01 5 179734239 179734239 C A GFPT2 Silent p.T537T 0.31 TCGA-49-4505-01 5 179976929 179976929 A G CNOT6 Splice_Site p.X38_splice 0.37 TCGA-49-4505-01 5 35954564 35954564 C A UGT3A1 Missense_Mutation p.V438L 0.38 tolerated(0.42) benign(0.019) TCGA-49-4505-01 5 41038956 41038956 G T MROH2B Missense_Mutation p.T699K 0.36 deleterious(0.02) benign(0.352) TCGA-49-4505-01 5 45262097 45262097 G T HCN1 Missense_Mutation p.L867I 0.21 tolerated_low_confidence(0.21) benign(0.01) TCGA-49-4505-01 5 75596736 75596736 A G SV2C Missense_Mutation p.I607V 0.37 tolerated(0.09) probably_damaging(0.977) TCGA-49-4505-01 5 79351687 79351687 G T THBS4 Silent p.R124R 0.13 TCGA-49-4505-01 6 132938904 132938904 G T TAAR2 Nonsense_Mutation p.Y147* 0.33 TCGA-49-4505-01 6 159646637 159646637 C T FNDC1 Missense_Mutation p.R319C 0.04 deleterious(0) unknown(0) TCGA-49-4505-01 6 17624952 17624952 G A NUP153 Silent p.P1338P 0.26 TCGA-49-4505-01 6 26156797 26156797 C A HIST1H1E Missense_Mutation p.A60D 0.16 deleterious(0) probably_damaging(0.992) TCGA-49-4505-01 6 26509306 26509306 C A BTN1A1 Silent p.I495I 0.17 TCGA-49-4505-01 6 30115712 30115712 C A TRIM40 3'UTR 0.50 TCGA-49-4505-01 6 31113225 31113225 C A CCHCR1 Missense_Mutation p.S580I 0.31 deleterious(0.01) possibly_damaging(0.822) TCGA-49-4505-01 6 31765615 31765615 G A LSM2 Silent p.Y69Y 0.07 TCGA-49-4505-01 6 33696019 33696019 G C IP6K3 Missense_Mutation p.N86K 0.24 tolerated(0.24) benign(0.081) TCGA-49-4505-01 6 44222605 44222605 G A SLC35B2 Silent p.I379I 0.05 TCGA-49-4505-01 6 49802968 49802968 G T CRISP1 3'UTR 0.38 TCGA-49-4505-01 6 52052599 52052599 C T IL17A Missense_Mutation p.L76F 0.18 tolerated(0.08) benign(0.125) TCGA-49-4505-01 6 53133888 53133888 C T ELOVL5 3'UTR 0.10 TCGA-49-4505-01 6 90504317 90504317 C A MDN1 Missense_Mutation p.S178I 0.40 possibly_damaging(0.897) TCGA-49-4505-01 6 93967241 93967241 C A EPHA7 Missense_Mutation p.G704V 0.48 deleterious(0.01) probably_damaging(0.996) TCGA-49-4505-01 7 100675218 100675218 C T MUC17 Missense_Mutation p.A174V 0.09 benign(0.049) TCGA-49-4505-01 7 142378621 142378621 C A MTRNR2L6 3'Flank 0.42 TCGA-49-4505-01 7 142562293 142562293 G T EPHB6 Silent p.T245T 0.38 TCGA-49-4505-01 7 143140889 143140889 G T TAS2R60 Missense_Mutation p.S115I 0.16 deleterious(0) probably_damaging(0.972) TCGA-49-4505-01 7 148463701 148463701 C T CUL1 Missense_Mutation p.H280Y 0.06 deleterious(0) probably_damaging(0.962) TCGA-49-4505-01 7 148921264 148921264 G A ZNF282 Missense_Mutation p.R514H 0.12 deleterious(0.04) possibly_damaging(0.461) TCGA-49-4505-01 7 150772306 150772306 C T SLC4A2 Intron 0.47 TCGA-49-4505-01 7 151478496 151478496 C A PRKAG2 Missense_Mutation p.G70C 0.35 deleterious_low_confidence(0.01) benign(0.376) TCGA-49-4505-01 7 1535817 1535817 G A INTS1 Silent p.I562I 0.08 TCGA-49-4505-01 7 154263946 154263946 G T DPP6 Missense_Mutation p.R191I 0.06 deleterious(0) possibly_damaging(0.696) TCGA-49-4505-01 7 20449248 20449248 C A ITGB8 Silent p.S678S 0.25 TCGA-49-4505-01 7 23809344 23809344 G T STK31 Missense_Mutation p.S561I 0.27 tolerated(0.12) benign(0.125) TCGA-49-4505-01 7 41729253 41729253 A T INHBA Missense_Mutation p.S426T 0.09 tolerated(0.18) benign(0.198) TCGA-49-4505-01 7 57187895 57187895 G A ZNF479 Silent p.Y409Y 0.36 TCGA-49-4505-01 7 81641517 81641517 C T CACNA2D1 Missense_Mutation p.D439N 0.22 tolerated(0.68) benign(0.064) TCGA-49-4505-01 7 82579564 82579564 G A PCLO Missense_Mutation p.T3447M 0.30 unknown(0) TCGA-49-4505-01 8 106810978 106810978 G T ZFPM2 Missense_Mutation p.G256C 0.31 deleterious(0) probably_damaging(1) TCGA-49-4505-01 8 114111054 114111054 A C CSMD3 Missense_Mutation p.F283C 0.07 deleterious(0) probably_damaging(0.948) TCGA-49-4505-01 8 124810464 124810464 A T FAM91A1 Missense_Mutation p.S516C 0.22 tolerated(0.07) benign(0.433) TCGA-49-4505-01 8 139380184 139380184 G T FAM135B Missense_Mutation p.H15N 0.31 tolerated(0.19) benign(0.048) TCGA-49-4505-01 8 144993918 144993918 G A PLEC Silent p.L3494L 0.29 TCGA-49-4505-01 8 25315817 25315817 T A KCTD9 5'UTR 0.16 TCGA-49-4505-01 8 2966188 2966188 G T CSMD1 Missense_Mutation p.Q2231K 0.13 benign(0.017) TCGA-49-4505-01 8 51314846 51314846 T A SNTG1 Missense_Mutation p.I35N 0.15 deleterious(0) benign(0.141) TCGA-49-4505-01 8 52384748 52384748 T A PXDNL Missense_Mutation p.N271Y 0.35 deleterious(0) probably_damaging(0.994) TCGA-49-4505-01 8 6782358 6782358 G T DEFA6 Missense_Mutation p.H95Q 0.07 tolerated(0.07) benign(0.163) TCGA-49-4505-01 8 70964340 70964340 G T PRDM14 Missense_Mutation p.S563Y 0.12 tolerated(1) possibly_damaging(0.828) TCGA-49-4505-01 8 72755870 72755870 G T RP11-383H13.1 Silent p.P78P 0.24 TCGA-49-4505-01 8 77764127 77764127 C A ZFHX4 Missense_Mutation p.A1657D 0.14 benign(0.004) TCGA-49-4505-01 8 92972678 92972678 C A RUNX1T1 Missense_Mutation p.G547V 0.12 deleterious(0) probably_damaging(0.993) TCGA-49-4505-01 9 113194879 113194879 C A SVEP1 Missense_Mutation p.G1699V 0.24 probably_damaging(1) TCGA-49-4505-01 9 134365892 134365892 A G PRRC2B Intron 0.18 TCGA-49-4505-01 9 134465353 134465353 G T RAPGEF1 Missense_Mutation p.F761L 0.16 tolerated(0.24) benign(0.205) TCGA-49-4505-01 9 21409376 21409376 T C IFNA8 Silent p.D67D 0.31 TCGA-49-4505-01 9 21971140 21971140 G T CDKN2A Missense_Mutation p.A73D 0.32 tolerated(0.18) possibly_damaging(0.745) TCGA-49-4505-01 9 38395944 38395944 C T ALDH1B1 Missense_Mutation p.H67Y 0.32 tolerated(0.06) benign(0.001) TCGA-49-4505-01 9 38395945 38395945 A T ALDH1B1 Missense_Mutation p.H67L 0.32 tolerated(0.07) benign(0.001) TCGA-49-4505-01 9 39073772 39073772 A G CNTNAP3 3'UTR 0.28 TCGA-49-4505-01 9 77377632 77377632 T A TRPM6 Missense_Mutation p.R1319W 0.14 deleterious_low_confidence(0) benign(0.438) TCGA-49-4505-01 9 79461573 79461573 T C PRUNE2 Silent p.S122S 0.11 TCGA-49-4505-01 9 79461594 79461594 A G PRUNE2 Silent p.S115S 0.12 TCGA-49-4505-01 9 95773546 95773546 C T FGD3 Missense_Mutation p.R343W 0.23 deleterious(0) probably_damaging(0.983) TCGA-49-4505-01 X 101095868 101095868 C A NXF5 Splice_Site p.X161_splice 0.18 TCGA-49-4505-01 X 135482182 135482182 G T GPR112 Missense_Mutation p.G2828C 0.51 deleterious(0.04) probably_damaging(0.963) TCGA-49-4505-01 X 135593999 135593999 G T HTATSF1 Missense_Mutation p.D699Y 0.54 deleterious_low_confidence(0) unknown(0) TCGA-49-4505-01 X 148048526 148048526 G A AFF2 Silent p.L1040L 0.08 TCGA-49-4505-01 X 154464554 154464554 G A VBP1 Silent p.L143L 0.23 TCGA-49-4505-01 X 16855792 16855792 G C TXLNG Missense_Mutation p.R379T 0.08 deleterious(0) probably_damaging(0.925) TCGA-49-4505-01 X 20034374 20034374 C A MAP7D2 Missense_Mutation p.K494N 0.38 tolerated(0.22) unknown(0) TCGA-49-4505-01 X 29973557 29973557 C A IL1RAPL1 Missense_Mutation p.Q571K 0.43 tolerated(0.12) benign(0.037) TCGA-49-4505-01 X 3028249 3028249 G T ARSF Missense_Mutation p.C449F 0.43 deleterious(0) probably_damaging(0.998) TCGA-49-4505-01 X 34961522 34961522 C G FAM47B Missense_Mutation p.P192A 0.60 deleterious(0.02) probably_damaging(0.95) TCGA-49-4505-01 X 37663315 37663315 G T CYBB Missense_Mutation p.W361C 0.11 deleterious(0) probably_damaging(1) TCGA-49-4505-01 X 91134201 91134201 C A PCDH11X Missense_Mutation p.P988T 0.50 tolerated(0.09) probably_damaging(0.992) TCGA-49-4506-01 10 112764460 112764460 A G SHOC2 Missense_Mutation p.I357V 0.15 tolerated(1) benign(0) TCGA-49-4506-01 10 112838174 112838174 C T ADRA2A Silent p.C140C 0.09 TCGA-49-4506-01 10 116060424 116060424 G A AFAP1L2 Missense_Mutation p.P523L 0.12 deleterious(0.02) benign(0.008) TCGA-49-4506-01 10 124358327 124358327 A C DMBT1 Silent p.G998G 0.11 TCGA-49-4506-01 10 51877772 51877772 A G FAM21A Missense_Mutation p.K750R 0.24 tolerated(0.47) benign(0.004) TCGA-49-4506-01 10 58118343 58118343 C A ZWINT Missense_Mutation p.G256W 0.25 deleterious_low_confidence(0) possibly_damaging(0.721) TCGA-49-4506-01 10 98105750 98105750 A G OPALIN Missense_Mutation p.M125T 0.23 tolerated_low_confidence(0.18) benign(0.402) TCGA-49-4506-01 11 103006491 103006491 G T DYNC2H1 Silent p.R796R 0.24 TCGA-49-4506-01 11 113076778 113076778 C A NCAM1 Silent p.V227V 0.32 TCGA-49-4506-01 11 116660968 116660968 G T APOA5 Missense_Mutation p.P326Q 0.30 deleterious(0.02) probably_damaging(0.949) TCGA-49-4506-01 11 119509492 119509492 C A RP11-196E1.3 Intron 0.17 TCGA-49-4506-01 11 56237132 56237132 G T OR5M3 Missense_Mutation p.P281H 0.19 deleterious(0) probably_damaging(0.999) TCGA-49-4506-01 11 6806454 6806454 G T OR2AG1 Silent p.L62L 0.17 TCGA-49-4506-01 11 7063760 7063760 T A NLRP14 Missense_Mutation p.V168E 0.17 tolerated(0.29) benign(0.015) TCGA-49-4506-01 11 92086791 92086791 G C FAT3 Missense_Mutation p.G505R 0.33 probably_damaging(1) TCGA-49-4506-01 12 13768186 13768186 C A GRIN2B Missense_Mutation p.A506S 0.15 deleterious(0.02) possibly_damaging(0.559) TCGA-49-4506-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.18 deleterious(0.04) possibly_damaging(0.506) TCGA-49-4506-01 12 29614910 29614910 A T OVCH1 Silent p.I719I 0.07 TCGA-49-4506-01 13 20425887 20425887 C A ZMYM5 Missense_Mutation p.G145V 0.06 deleterious_low_confidence(0) benign(0.105) TCGA-49-4506-01 13 20425888 20425888 C A ZMYM5 Nonsense_Mutation p.G145* 0.06 TCGA-49-4506-01 13 21373447 21373447 A T XPO4 Missense_Mutation p.W727R 0.08 deleterious(0.01) benign(0.248) TCGA-49-4506-01 13 25848295 25848295 T C MTMR6 Missense_Mutation p.S19G 0.08 tolerated(0.25) benign(0.002) TCGA-49-4506-01 13 29041231 29041231 A G FLT1 Missense_Mutation p.M66T 0.17 tolerated(0.98) benign(0) TCGA-49-4506-01 13 32653165 32653165 C T FRY Missense_Mutation p.P89S 0.14 tolerated(0.11) benign(0.318) TCGA-49-4506-01 13 58207733 58207733 C A PCDH17 Silent p.I351I 0.12 TCGA-49-4506-01 13 92560221 92560221 C A GPC5 Silent p.I437I 0.17 TCGA-49-4506-01 13 93518617 93518617 A T GPC5 Silent p.A548A 0.12 TCGA-49-4506-01 14 107078583 107078583 G C IGHV1-58 Silent p.T47T 0.30 TCGA-49-4506-01 14 34243683 34243683 T C NPAS3 Silent p.H331H 0.26 TCGA-49-4506-01 14 42373450 42373450 G T LRFN5 3'UTR 0.31 TCGA-49-4506-01 14 45414728 45414728 C - KLHL28 Frame_Shift_Del p.G135Vfs*56 0.24 TCGA-49-4506-01 14 50600930 50600930 C A SOS2 Nonsense_Mutation p.G996* 0.19 TCGA-49-4506-01 14 94394801 94394801 G T FAM181A Missense_Mutation p.R119L 0.17 deleterious(0) probably_damaging(1) TCGA-49-4506-01 14 94394802 94394802 G T FAM181A Silent p.R119R 0.21 TCGA-49-4506-01 15 23889141 23889141 T C MAGEL2 Silent p.%3D 0.20 TCGA-49-4506-01 15 24921430 24921436 AGCCCAT CCCCCCC NPAP1 Missense_Mutation p.KPI139TPP 0.12 TCGA-49-4506-01 15 51741321 51741321 G A DMXL2 Nonsense_Mutation p.R2992* 0.23 TCGA-49-4506-01 15 84659933 84659933 G T ADAMTSL3 Nonsense_Mutation p.G1314* 0.19 TCGA-49-4506-01 16 15814806 15814806 C T MYH11 Missense_Mutation p.A1568T 0.12 probably_damaging(1) TCGA-49-4506-01 16 17211812 17211812 C A XYLT1 Nonsense_Mutation p.E750* 0.10 TCGA-49-4506-01 16 27375204 27375204 G A IL4R 3'UTR 0.15 TCGA-49-4506-01 16 9197114 9197114 A C C16orf72 Missense_Mutation p.H194P 0.29 deleterious(0) possibly_damaging(0.663) TCGA-49-4506-01 17 29645432 29645432 T G EVI2A Missense_Mutation p.K223N 0.12 deleterious(0.04) benign(0.114) TCGA-49-4506-01 17 33769261 33769261 C A SLFN13 Nonsense_Mutation p.E415* 0.07 TCGA-49-4506-01 17 46690610 46690611 - A HOXB8 Frame_Shift_Ins p.P229Lfs*75 0.21 TCGA-49-4506-01 17 57311875 57311875 T C GDPD1 Silent p.N55N 0.07 TCGA-49-4506-01 17 63133675 63133675 A G RGS9 Missense_Mutation p.Q6R 0.14 tolerated(0.23) benign(0.024) TCGA-49-4506-01 17 7291918 7291918 A C TNK1 Missense_Mutation p.R562S 0.18 tolerated(0.05) probably_damaging(0.996) TCGA-49-4506-01 18 14851640 14851640 G T ANKRD30B Nonsense_Mutation p.E1114* 0.24 TCGA-49-4506-01 18 67727182 67727182 G A RTTN Missense_Mutation p.S1615L 0.38 deleterious(0.03) probably_damaging(0.998) TCGA-49-4506-01 18 76754914 76754914 C A SALL3 Missense_Mutation p.P975T 0.45 tolerated(0.21) benign(0.002) TCGA-49-4506-01 19 10102467 10102467 G A COL5A3 Silent p.S648S 0.06 TCGA-49-4506-01 19 10600347 10600347 A T KEAP1 Missense_Mutation p.M503K 0.25 deleterious(0) probably_damaging(0.997) TCGA-49-4506-01 19 10668512 10668512 C A KRI1 Silent p.T479T 0.18 TCGA-49-4506-01 19 14854511 14854511 G T EMR2 Silent p.R757R 0.39 TCGA-49-4506-01 19 56424482 56424482 A T NLRP13 Missense_Mutation p.V234E 0.34 tolerated(1) benign(0.002) TCGA-49-4506-01 19 746366 746366 C A PALM Missense_Mutation p.A239E 0.28 deleterious(0) probably_damaging(0.999) TCGA-49-4506-01 1 101705215 101705215 C A S1PR1 Nonsense_Mutation p.Y225* 0.16 TCGA-49-4506-01 1 152748899 152748899 C A LCE1F Missense_Mutation p.P18T 0.20 tolerated_low_confidence(0.11) unknown(0) TCGA-49-4506-01 1 152749165 152749165 C T LCE1F Silent p.C106C 0.13 TCGA-49-4506-01 1 155257693 155257693 G T HCN3 Silent p.R588R 0.15 TCGA-49-4506-01 1 155408569 155408569 G A ASH1L Missense_Mutation p.H1793Y 0.08 deleterious_low_confidence(0.01) benign(0.108) TCGA-49-4506-01 1 156020169 156020169 C T UBQLN4 Missense_Mutation p.M218I 0.32 tolerated(0.07) benign(0.119) TCGA-49-4506-01 1 158632684 158632684 G T SPTA1 Missense_Mutation p.H758N 0.11 deleterious(0.04) probably_damaging(0.95) TCGA-49-4506-01 1 179604812 179604812 C A TDRD5 Missense_Mutation p.T437K 0.19 tolerated(0.2) benign(0.038) TCGA-49-4506-01 1 204937421 204937421 G A NFASC Missense_Mutation p.G251S 0.10 deleterious(0.01) possibly_damaging(0.851) TCGA-49-4506-01 1 237774102 237774102 A G RYR2 Missense_Mutation p.H1575R 0.18 benign(0.001) TCGA-49-4506-01 1 242264084 242264084 T A PLD5 Nonsense_Mutation p.K414* 0.20 TCGA-49-4506-01 1 248084381 248084381 C T OR2T8 Missense_Mutation p.A21V 0.06 tolerated(0.49) benign(0.008) TCGA-49-4506-01 20 55012296 55012296 T C CASS4 Missense_Mutation p.L38P 0.17 deleterious(0) probably_damaging(0.999) TCGA-49-4506-01 20 55012297 55012297 G T CASS4 Silent p.L38L 0.17 TCGA-49-4506-01 21 34974653 34974653 T A CRYZL1 Splice_Site p.X156_splice 0.21 TCGA-49-4506-01 21 44841183 44841184 - G SIK1 Frame_Shift_Ins p.Y189Vfs*8 0.21 TCGA-49-4506-01 22 22569450 22569450 G C IGLV10-54 Missense_Mutation p.V48L 0.33 tolerated_low_confidence(0.15) benign(0.008) TCGA-49-4506-01 22 24466970 24466970 C T CABIN1 Missense_Mutation p.R818W 0.07 deleterious(0) probably_damaging(0.997) TCGA-49-4506-01 22 35779108 35779108 G C HMOX1 Missense_Mutation p.Q11H 0.05 tolerated(0.05) possibly_damaging(0.581) TCGA-49-4506-01 2 102956626 102956626 C A IL1RL1 Missense_Mutation p.P114Q 0.27 deleterious(0) probably_damaging(1) TCGA-49-4506-01 2 102956627 102956627 A G IL1RL1 Silent p.P114P 0.27 TCGA-49-4506-01 2 11740993 11740993 T C GREB1 Missense_Mutation p.C801R 0.19 deleterious(0.01) possibly_damaging(0.493) TCGA-49-4506-01 2 122488515 122488515 C G NIFK Missense_Mutation p.R173T 0.10 deleterious(0) possibly_damaging(0.558) TCGA-49-4506-01 2 130953906 130953906 G T TUBA3E Silent p.V14V 0.24 TCGA-49-4506-01 2 133486442 133486442 C A NCKAP5 Missense_Mutation p.A1843S 0.20 tolerated(0.25) benign(0.438) TCGA-49-4506-01 2 133486443 133486443 C T NCKAP5 Missense_Mutation p.M1842I 0.19 tolerated(0.22) benign(0.004) TCGA-49-4506-01 2 141625676 141625676 T A LRP1B Silent p.T1442T 0.20 TCGA-49-4506-01 2 176995521 176995521 C A HOXD8 Missense_Mutation p.Q143K 0.19 tolerated(0.14) benign(0.074) TCGA-49-4506-01 2 179398651 179398651 C T TTN Missense_Mutation p.E34231K 0.14 TCGA-49-4506-01 2 185731221 185731221 T A ZNF804A Nonsense_Mutation p.Y79* 0.07 TCGA-49-4506-01 2 189849926 189849926 A T COL3A1 Missense_Mutation p.T96S 0.23 unknown(0) TCGA-49-4506-01 2 227660594 227660594 C A IRS1 Missense_Mutation p.W954L 0.16 tolerated(0.65) benign(0.392) TCGA-49-4506-01 2 242142800 242142800 G A ANO7 Missense_Mutation p.R313H 0.36 deleterious(0) probably_damaging(0.993) TCGA-49-4506-01 2 31147016 31147016 G T GALNT14 Missense_Mutation p.A455D 0.23 tolerated(0.63) benign(0.211) TCGA-49-4506-01 2 38294176 38294176 T A RMDN2 3'UTR 0.19 TCGA-49-4506-01 2 65473856 65473859 AGAG - ACTR2 Frame_Shift_Del p.E126Rfs*3 0.11 TCGA-49-4506-01 2 95537412 95537412 G A TEKT4 Missense_Mutation p.A30T 0.13 tolerated(0.05) benign(0.38) TCGA-49-4506-01 3 10320619 10320619 G A TATDN2 Silent p.T732T 0.11 TCGA-49-4506-01 3 122942517 122942517 T G SEC22A Nonsense_Mutation p.Y98* 0.28 TCGA-49-4506-01 3 194081021 194081021 T A LRRC15 Missense_Mutation p.Y257F 0.26 tolerated(0.49) benign(0.038) TCGA-49-4506-01 3 64589670 64589670 C G ADAMTS9 Silent p.L1225L 0.33 TCGA-49-4506-01 3 97983253 97983253 C A OR5H6 Missense_Mutation p.P42Q 0.22 deleterious(0.04) possibly_damaging(0.687) TCGA-49-4506-01 4 151169531 151169531 G T DCLK2 Missense_Mutation p.W667C 0.08 deleterious(0) probably_damaging(0.997) TCGA-49-4506-01 4 155490722 155490722 G C FGB Missense_Mutation p.E339Q 0.17 tolerated(0.17) possibly_damaging(0.537) TCGA-49-4506-01 4 164506998 164506998 G A MARCH1 Missense_Mutation p.S109F 0.15 deleterious(0.02) benign(0.008) TCGA-49-4506-01 4 177069485 177069485 T C WDR17 Silent p.Y656Y 0.21 TCGA-49-4506-01 4 178257420 178257420 G T NEIL3 Missense_Mutation p.G191V 0.12 deleterious(0) probably_damaging(1) TCGA-49-4506-01 4 55569902 55569902 G C KIT Missense_Mutation p.E257Q 0.09 tolerated(0.58) benign(0.064) TCGA-49-4506-01 4 85662997 85662997 G A WDFY3 Missense_Mutation p.R2051C 0.09 deleterious(0.03) benign(0.26) TCGA-49-4506-01 5 140203159 140203159 C T PCDHA5 Missense_Mutation p.S600L 0.17 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-49-4506-01 5 140772816 140772816 G A PCDHGA8 Missense_Mutation p.A146T 0.29 tolerated_low_confidence(0.57) benign(0.23) TCGA-49-4506-01 5 151784153 151784153 G A NMUR2 Silent p.S174S 0.12 TCGA-49-4506-01 5 26881622 26881622 C A CDH9 Missense_Mutation p.G665W 0.09 deleterious(0) probably_damaging(1) TCGA-49-4506-01 5 58271618 58271618 G A PDE4D Missense_Mutation p.P627S 0.14 tolerated_low_confidence(0.06) probably_damaging(1) TCGA-49-4506-01 5 9154736 9154736 C T SEMA5A Missense_Mutation p.E449K 0.07 tolerated(0.44) benign(0.031) TCGA-49-4506-01 6 129465145 129465145 A G LAMA2 Missense_Mutation p.R247G 0.12 deleterious(0) probably_damaging(0.999) TCGA-49-4506-01 6 137041635 137041635 T A MAP3K5 Missense_Mutation p.I181F 0.18 deleterious(0) probably_damaging(0.998) TCGA-49-4506-01 6 137041644 137041644 C A MAP3K5 Missense_Mutation p.A178S 0.19 tolerated(0.13) possibly_damaging(0.793) TCGA-49-4506-01 6 31751989 31751989 A G VARS Splice_Site p.X557_splice 0.04 TCGA-49-4506-01 6 54735136 54735136 C T FAM83B Missense_Mutation p.A31V 0.18 deleterious(0) probably_damaging(1) TCGA-49-4506-01 6 70092823 70092823 G A BAI3 Missense_Mutation p.S1459N 0.10 deleterious(0.04) benign(0.056) TCGA-49-4506-01 7 100839574 100839574 G T MOGAT3 Silent p.T255T 0.15 TCGA-49-4506-01 7 106509606 106509606 C - PIK3CG Frame_Shift_Del p.T535Pfs*25 0.35 TCGA-49-4506-01 7 107823140 107823140 G C NRCAM Missense_Mutation p.D843E 0.28 deleterious(0) probably_damaging(0.995) TCGA-49-4506-01 7 122635164 122635164 C G TAS2R16 Missense_Mutation p.Q175H 0.26 tolerated(0.24) benign(0.04) TCGA-49-4506-01 7 138603645 138603645 C G KIAA1549 Missense_Mutation p.V243L 0.21 tolerated(0.56) benign(0) TCGA-49-4506-01 7 151945190 151945190 T A KMT2C Missense_Mutation p.S777C 0.15 possibly_damaging(0.664) TCGA-49-4506-01 7 20198725 20198726 - A MACC1 Frame_Shift_Ins p.W420Lfs*9 0.25 TCGA-49-4506-01 7 28610075 28610075 C A CREB5 Missense_Mutation p.N128K 0.19 tolerated(0.28) benign(0.011) TCGA-49-4506-01 7 30492655 30492655 C T NOD1 Silent p.V126V 0.20 TCGA-49-4506-01 7 56087408 56087408 C G PSPH Missense_Mutation p.G54R 0.08 deleterious(0.02) possibly_damaging(0.536) TCGA-49-4506-01 7 76121568 76121568 C A DTX2 Missense_Mutation p.A336E 0.31 deleterious(0) possibly_damaging(0.493) TCGA-49-4506-01 7 81386504 81386504 C T HGF Splice_Site p.X161_splice 0.26 TCGA-49-4506-01 7 99705129 99705129 G C TAF6 Missense_Mutation p.P629A 0.18 tolerated_low_confidence(0.08) benign(0.016) TCGA-49-4506-01 8 10396270 10396270 G C PRSS55 Silent p.L342L 0.25 TCGA-49-4506-01 8 113569029 113569029 C A CSMD3 Missense_Mutation p.E1399D 0.14 tolerated(0.42) possibly_damaging(0.773) TCGA-49-4506-01 8 48883365 48883365 G T MCM4 Missense_Mutation p.D577Y 0.28 deleterious(0) probably_damaging(1) TCGA-49-4506-01 8 55540191 55540191 G A RP1 Missense_Mutation p.C1250Y 0.08 deleterious(0) possibly_damaging(0.59) TCGA-49-4506-01 8 56695311 56695311 C T TGS1 Nonsense_Mutation p.R36* 0.25 TCGA-49-4506-01 8 8748245 8748245 G C MFHAS1 Missense_Mutation p.P775R 0.06 tolerated(0.23) benign(0.007) TCGA-49-4506-01 9 118982243 118982243 C A PAPPA Missense_Mutation p.P649H 0.17 deleterious(0) probably_damaging(0.971) TCGA-49-4506-01 9 21187398 21187398 C T IFNA4 Missense_Mutation p.G45R 0.21 tolerated(1) benign(0.001) TCGA-49-4506-01 X 107977758 107977758 C A IRS4 Missense_Mutation p.R606L 0.19 tolerated_low_confidence(0.08) unknown(0) TCGA-49-4506-01 X 12632918 12632918 C A FRMPD4 Missense_Mutation p.L114M 0.14 deleterious(0.03) probably_damaging(0.971) TCGA-49-4506-01 X 131197485 131197485 G T MST4 Nonsense_Mutation p.E100* 0.12 TCGA-49-4506-01 X 153209788 153209788 A C RENBP Missense_Mutation p.M37R 0.13 tolerated(0.07) benign(0.004) TCGA-49-4506-01 X 18264732 18264732 T A SCML2 Missense_Mutation p.H596L 0.15 tolerated(0.58) benign(0.001) TCGA-49-4506-01 X 3238914 3238914 T C MXRA5 Silent p.Q1604Q 0.15 TCGA-49-4506-01 X 35971801 35971801 G A CXorf22 Missense_Mutation p.G380E 0.16 deleterious(0.04) probably_damaging(0.951) TCGA-49-4506-01 X 7267979 7267979 G T STS Missense_Mutation p.G477C 0.15 deleterious(0) probably_damaging(0.987) TCGA-49-4507-01 10 102035226 102035226 T A BLOC1S2 Missense_Mutation p.K141M 0.23 deleterious(0) unknown(0) TCGA-49-4507-01 10 12272994 12272994 A G CDC123 Missense_Mutation p.E163G 0.24 deleterious(0.04) probably_damaging(0.969) TCGA-49-4507-01 10 15655663 15655663 C A ITGA8 Missense_Mutation p.A517S 0.10 tolerated(1) benign(0.032) TCGA-49-4507-01 10 37422904 37422904 G T ANKRD30A Missense_Mutation p.Q170H 0.26 deleterious(0.01) probably_damaging(0.934) TCGA-49-4507-01 10 37430832 37430832 C G ANKRD30A Missense_Mutation p.S280C 0.21 deleterious(0.02) benign(0.265) TCGA-49-4507-01 10 37508196 37508196 C G ANKRD30A Missense_Mutation p.Q1130E 0.06 tolerated(0.54) benign(0.217) TCGA-49-4507-01 10 50122229 50122229 T C LRRC18 5'UTR 0.14 TCGA-49-4507-01 10 5014908 5014909 - T AKR1C1 Frame_Shift_Ins p.Y272Lfs*3 0.11 TCGA-49-4507-01 10 61833291 61833291 C T ANK3 Missense_Mutation p.D2450N 0.14 benign(0.135) TCGA-49-4507-01 10 63450314 63450314 C G C10orf107 Missense_Mutation p.Q75E 0.07 deleterious(0) probably_damaging(0.969) TCGA-49-4507-01 10 73434908 73434908 T C CDH23 Missense_Mutation p.Y89H 0.17 deleterious(0.03) probably_damaging(0.957) TCGA-49-4507-01 10 79581303 79581303 T G DLG5 Missense_Mutation p.K980T 0.29 deleterious(0.01) benign(0.159) TCGA-49-4507-01 10 81373955 81373955 A - SFTPA1 3'Flank 0.33 TCGA-49-4507-01 10 81930651 81930651 C A ANXA11 Missense_Mutation p.A26S 0.24 tolerated(0.46) unknown(0) TCGA-49-4507-01 10 96117824 96117824 C A NOC3L Intron 0.20 TCGA-49-4507-01 10 98741603 98741603 G A C10orf12 Silent p.R152R 0.10 TCGA-49-4507-01 10 99024633 99024633 G A ARHGAP19 Missense_Mutation p.T118M 0.06 deleterious(0) probably_damaging(0.993) TCGA-49-4507-01 11 107904543 107904543 C T CUL5 Nonsense_Mutation p.Q14* 0.11 TCGA-49-4507-01 11 108206578 108206578 G C ATM Missense_Mutation p.D2720H 0.12 deleterious(0) probably_damaging(0.997) TCGA-49-4507-01 11 114320783 114320783 A T REXO2 3'UTR 0.21 TCGA-49-4507-01 11 130332082 130332082 C T ADAMTS15 Silent p.I397I 0.13 TCGA-49-4507-01 11 131240725 131240725 G A NTM Missense_Mutation p.M8I 0.23 tolerated_low_confidence(0.07) benign(0.008) TCGA-49-4507-01 11 20066788 20066788 C A NAV2 Silent p.L1181L 0.32 TCGA-49-4507-01 11 40136618 40136618 C A LRRC4C Missense_Mutation p.G409C 0.28 deleterious(0) probably_damaging(1) TCGA-49-4507-01 11 55681268 55681268 G A OR5W2 Missense_Mutation p.S264F 0.28 deleterious(0) possibly_damaging(0.79) TCGA-49-4507-01 11 55872945 55872945 G C OR8H2 Missense_Mutation p.A143P 0.09 tolerated(0.11) possibly_damaging(0.841) TCGA-49-4507-01 11 55927085 55927085 C T OR8K5 Missense_Mutation p.A237T 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.886) TCGA-49-4507-01 11 59630101 59630101 C T TCN1 Silent p.L118L 0.08 TCGA-49-4507-01 11 70319292 70319292 T A SHANK2 Silent p.P1745P 0.08 TCGA-49-4507-01 11 70319293 70319293 G A SHANK2 Missense_Mutation p.P1745L 0.09 deleterious(0.01) possibly_damaging(0.713) TCGA-49-4507-01 11 7981504 7981504 A T NLRP10 Missense_Mutation p.M552K 0.23 tolerated(0.24) benign(0.094) TCGA-49-4507-01 11 903105 903105 A T CHID1 Missense_Mutation p.F65I 0.32 tolerated(0.44) benign(0.004) TCGA-49-4507-01 11 96117783 96117783 C A CCDC82 Missense_Mutation p.E43D 0.15 tolerated(0.29) benign(0.003) TCGA-49-4507-01 12 10462245 10462245 G A KLRD1 Missense_Mutation p.E41K 0.28 tolerated(0.16) benign(0.001) TCGA-49-4507-01 12 105199029 105199029 G A SLC41A2 Silent p.Y541Y 0.48 TCGA-49-4507-01 12 108686093 108686093 C A CMKLR1 Missense_Mutation p.R216L 0.42 deleterious(0.04) benign(0.142) TCGA-49-4507-01 12 108958090 108958090 G T ISCU Silent p.G50G 0.44 TCGA-49-4507-01 12 111772465 111772465 G A CUX2 Silent p.T1049T 0.19 TCGA-49-4507-01 12 33592339 33592339 C T SYT10 Missense_Mutation p.R40Q 0.06 tolerated(0.43) benign(0) TCGA-49-4507-01 12 3649868 3649868 C T PRMT8 Missense_Mutation p.R58W 0.36 deleterious(0) possibly_damaging(0.676) TCGA-49-4507-01 12 52842654 52842654 C A KRT6B Missense_Mutation p.R392I 0.16 deleterious(0) probably_damaging(0.99) TCGA-49-4507-01 12 53045393 53045393 C G KRT2 Missense_Mutation p.E178D 0.17 deleterious(0) probably_damaging(0.997) TCGA-49-4507-01 12 56096921 56096921 T A ITGA7 Missense_Mutation p.Q83L 0.53 tolerated(0.15) benign(0.042) TCGA-49-4507-01 12 56992465 56992465 G A BAZ2A Silent p.I1885I 0.10 TCGA-49-4507-01 12 58000292 58000292 C T DTX3 5'UTR 0.19 TCGA-49-4507-01 12 81593168 81593168 G C ACSS3 Silent p.L433L 0.20 TCGA-49-4507-01 12 85695254 85695254 C T ALX1 3'UTR 0.32 TCGA-49-4507-01 12 91449755 91449755 G C KERA Missense_Mutation p.L102V 0.24 deleterious(0) probably_damaging(0.998) TCGA-49-4507-01 12 99640276 99640276 C G ANKS1B Missense_Mutation p.G708A 0.23 tolerated(0.14) benign(0.018) TCGA-49-4507-01 13 47279229 47279229 G T LRCH1 Missense_Mutation p.S476I 0.21 deleterious(0.01) possibly_damaging(0.599) TCGA-49-4507-01 13 52952787 52952787 C T THSD1 Missense_Mutation p.G440S 0.17 tolerated(0.54) possibly_damaging(0.509) TCGA-49-4507-01 14 102028628 102028628 G T DIO3 Missense_Mutation p.Q265H 0.09 tolerated(0.05) probably_damaging(0.991) TCGA-49-4507-01 14 24785095 24785095 C G LTB4R Missense_Mutation p.Q80E 0.24 tolerated(0.28) benign(0.124) TCGA-49-4507-01 14 44976337 44976337 A T FSCB 5'UTR 0.16 TCGA-49-4507-01 14 70512629 70512629 C T SLC8A3 3'UTR 0.33 TCGA-49-4507-01 14 72176135 72176135 C T SIPA1L1 Missense_Mutation p.S1342L 0.21 tolerated(0.1) probably_damaging(0.978) TCGA-49-4507-01 14 75643092 75643092 G A TMED10 Missense_Mutation p.S64F 0.19 deleterious(0.01) benign(0.36) TCGA-49-4507-01 14 94121688 94121688 T A UNC79 Missense_Mutation p.W1993R 0.21 deleterious(0) probably_damaging(0.999) TCGA-49-4507-01 15 25425541 25425541 G A SNORD115-6 5'Flank 0.16 TCGA-49-4507-01 15 53889352 53889352 C T WDR72 Missense_Mutation p.M1024I 0.10 tolerated(0.25) benign(0) TCGA-49-4507-01 16 15771720 15771720 C T NDE1 Silent p.L100L 0.23 TCGA-49-4507-01 16 1838029 1838029 G T NUBP2 Missense_Mutation p.G193C 0.21 deleterious(0.01) probably_damaging(1) TCGA-49-4507-01 16 2025660 2025660 C T TBL3 Silent p.A312A 0.12 TCGA-49-4507-01 16 20331722 20331722 C T GP2 Silent p.L243L 0.25 TCGA-49-4507-01 16 31202719 31202719 G T FUS Splice_Site p.X514_splice 0.20 TCGA-49-4507-01 16 3340426 3340426 C G ZNF263 Missense_Mutation p.F640L 0.10 deleterious(0) probably_damaging(0.989) TCGA-49-4507-01 16 50664759 50664759 A C NKD1 Silent p.R211R 0.26 TCGA-49-4507-01 16 70432107 70432107 C G ST3GAL2 Missense_Mutation p.Q109H 0.10 benign(0.011) TCGA-49-4507-01 16 81181822 81181822 C A PKD1L2 RNA 0.13 TCGA-49-4507-01 16 81181823 81181823 C A PKD1L2 RNA 0.16 TCGA-49-4507-01 17 11757475 11757475 C T DNAH9 Silent p.F3221F 0.25 TCGA-49-4507-01 17 1549747 1549747 G A RILP Missense_Mutation p.P399S 0.36 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-49-4507-01 17 21730835 21730835 C A UBBP4 Missense_Mutation p.A46E 0.34 tolerated(0.11) possibly_damaging(0.906) TCGA-49-4507-01 17 3144090 3144090 G T OR1D4 RNA 0.18 TCGA-49-4507-01 17 33904426 33904426 G C PEX12 Missense_Mutation p.A104G 0.04 tolerated(0.09) benign(0.204) TCGA-49-4507-01 17 47247054 47247054 C T B4GALNT2 Silent p.L555L 0.23 TCGA-49-4507-01 17 48603496 48603496 T C MYCBPAP Silent p.S722S 0.20 TCGA-49-4507-01 17 54926178 54926178 G A DGKE Missense_Mutation p.R337Q 0.04 tolerated(0.31) benign(0.098) TCGA-49-4507-01 17 71375670 71375670 C T SDK2 Missense_Mutation p.R1594Q 0.27 tolerated(0.06) benign(0.004) TCGA-49-4507-01 17 71429966 71429966 C T SDK2 Missense_Mutation p.R406K 0.16 tolerated(0.48) benign(0.006) TCGA-49-4507-01 17 72350682 72350682 A T KIF19 Missense_Mutation p.E897V 0.20 deleterious(0) probably_damaging(0.918) TCGA-49-4507-01 17 76497900 76497900 T C DNAH17 Missense_Mutation p.D1738G 0.20 possibly_damaging(0.843) TCGA-49-4507-01 17 9850262 9850262 C G GAS7 Silent p.P188P 0.35 TCGA-49-4507-01 18 31538324 31538324 C G NOL4 Missense_Mutation p.G372A 0.21 tolerated(1) possibly_damaging(0.654) TCGA-49-4507-01 18 47091826 47091826 C G LIPG Missense_Mutation p.F79L 0.09 deleterious(0.02) benign(0.167) TCGA-49-4507-01 18 61322852 61322852 G T SERPINB3 3'UTR 0.23 TCGA-49-4507-01 18 61323171 61323171 G A SERPINB3 Missense_Mutation p.T298M 0.24 tolerated(0.26) benign(0.317) TCGA-49-4507-01 18 743353 743353 G A YES1 Nonsense_Mutation p.Q263* 0.28 TCGA-49-4507-01 19 10600447 10600447 G A KEAP1 Missense_Mutation p.R470C 0.38 deleterious(0.01) benign(0.136) TCGA-49-4507-01 19 1220434 1220434 A C STK11 Missense_Mutation p.D176A 0.21 deleterious(0) probably_damaging(1) TCGA-49-4507-01 19 17922725 17922725 G C B3GNT3 Missense_Mutation p.E305Q 0.17 tolerated(0.45) benign(0.038) TCGA-49-4507-01 19 21990838 21990838 T A ZNF43 Missense_Mutation p.K667N 0.31 tolerated(0.42) benign(0.038) TCGA-49-4507-01 19 23927473 23927473 C T ZNF681 Silent p.Q293Q 0.34 TCGA-49-4507-01 19 39076591 39076591 C A RYR1 Missense_Mutation p.D4939E 0.14 unknown(0) TCGA-49-4507-01 19 47207494 47207494 C T PRKD2 Missense_Mutation p.R274Q 0.09 deleterious(0.04) probably_damaging(0.998) TCGA-49-4507-01 19 47422497 47422497 G A ARHGAP35 Missense_Mutation p.A189T 0.42 tolerated(0.33) benign(0.009) TCGA-49-4507-01 19 49316528 49316528 C A HSD17B14 Silent p.T239T 0.33 TCGA-49-4507-01 19 54377186 54377186 G C MYADM Missense_Mutation p.D135H 0.25 tolerated(0.06) probably_damaging(0.971) TCGA-49-4507-01 19 54963275 54963275 C T LENG8 Missense_Mutation p.S15F 0.23 deleterious_low_confidence(0.02) benign(0.325) TCGA-49-4507-01 19 9071203 9071203 C T MUC16 Missense_Mutation p.A5415T 0.31 unknown(0) TCGA-49-4507-01 19 9491726 9491726 T A ZNF177 Missense_Mutation p.I240K 0.28 tolerated(0.08) benign(0) TCGA-49-4507-01 1 101188709 101188709 C G VCAM1 Silent p.L158L 0.12 TCGA-49-4507-01 1 13695841 13695841 C T PRAMEF19 Missense_Mutation p.R375H 0.16 benign(0.002) TCGA-49-4507-01 1 150532710 150532710 C T ADAMTSL4 3'UTR 0.08 TCGA-49-4507-01 1 158368421 158368421 G T OR10T2 Missense_Mutation p.T279K 0.12 deleterious(0) probably_damaging(0.982) TCGA-49-4507-01 1 158389737 158389737 C A OR10K2 Missense_Mutation p.R307I 0.29 deleterious(0.01) possibly_damaging(0.62) TCGA-49-4507-01 1 158585067 158585067 C A SPTA1 Missense_Mutation p.D2243Y 0.34 deleterious(0) probably_damaging(0.993) TCGA-49-4507-01 1 158654955 158654955 G T SPTA1 Silent p.I69I 0.08 TCGA-49-4507-01 1 159890120 159890120 C A TAGLN2 Silent p.T60T 0.10 TCGA-49-4507-01 1 160340482 160340482 G A NHLH1 5'UTR 0.39 TCGA-49-4507-01 1 161599655 161599655 C A FCGR3B Missense_Mutation p.A114S 0.11 tolerated(0.38) benign(0.012) TCGA-49-4507-01 1 169356319 169356319 G T BLZF1 Missense_Mutation p.A368S 0.28 tolerated(0.82) benign(0.005) TCGA-49-4507-01 1 169526011 169526011 G T F5 Silent p.V275V 0.19 TCGA-49-4507-01 1 18809312 18809312 G C KLHDC7A Missense_Mutation p.D613H 0.30 deleterious(0) possibly_damaging(0.814) TCGA-49-4507-01 1 197062239 197062239 A T ASPM Missense_Mutation p.F3079L 0.06 tolerated(1) benign(0) TCGA-49-4507-01 1 204006616 204006616 G T LINC00303 RNA 0.16 TCGA-49-4507-01 1 207196011 207196013 GTG CACTT C1orf116 Frame_Shift_Ins p.H366Kfs*3 0.17 TCGA-49-4507-01 1 227071533 227071534 - CA PSEN2 Frame_Shift_Ins p.M90Ifs*11 0.31 TCGA-49-4507-01 1 231403468 231403468 C T GNPAT Silent p.V366V 0.21 TCGA-49-4507-01 1 23417973 23417973 G A LUZP1 Nonsense_Mutation p.R928* 0.17 TCGA-49-4507-01 1 235600787 235600787 G T TBCE Nonsense_Mutation p.E372* 0.08 TCGA-49-4507-01 1 238048822 238048822 C G ZP4 Silent p.R343R 0.34 TCGA-49-4507-01 1 240374446 240374446 C A FMN2 Missense_Mutation p.H1326N 0.28 benign(0.009) TCGA-49-4507-01 1 26369043 26369043 G C SLC30A2 Missense_Mutation p.F243L 0.21 deleterious(0.03) benign(0.073) TCGA-49-4507-01 1 28081716 28081716 G T FAM76A Missense_Mutation p.D238Y 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-49-4507-01 1 29069062 29069062 A T YTHDF2 Missense_Mutation p.N94Y 0.14 tolerated(0.08) probably_damaging(0.928) TCGA-49-4507-01 1 44463634 44463634 C G SLC6A9 Missense_Mutation p.G607R 0.13 tolerated(0.28) possibly_damaging(0.548) TCGA-49-4507-01 1 77752671 77752671 G T AK5 Nonsense_Mutation p.E36* 0.30 TCGA-49-4507-01 1 87101784 87101784 G A RP4-651E10.4 Intron 0.35 TCGA-49-4507-01 20 18296557 18296557 C T ZNF133 Silent p.I353I 0.15 TCGA-49-4507-01 20 25470571 25470571 C T NINL Silent p.S512S 0.14 TCGA-49-4507-01 20 3090608 3090608 C A UBOX5 3'UTR 0.50 TCGA-49-4507-01 20 3529977 3529977 G T ATRN Missense_Mutation p.M368I 0.21 tolerated(0.09) benign(0.021) TCGA-49-4507-01 20 35433300 35433300 A G SOGA1 Silent p.N975N 0.15 TCGA-49-4507-01 20 47682795 47682795 T C CSE1L Silent p.L99L 0.07 TCGA-49-4507-01 20 47853035 47853035 A G DDX27 Missense_Mutation p.I590V 0.13 tolerated(0.57) benign(0.001) TCGA-49-4507-01 20 50052259 50052259 T C NFATC2 Missense_Mutation p.K630R 0.19 tolerated(0.59) benign(0.087) TCGA-49-4507-01 20 50407847 50407847 C A SALL4 Missense_Mutation p.G392V 0.12 deleterious(0) possibly_damaging(0.89) TCGA-49-4507-01 20 50408823 50408823 G A SALL4 Missense_Mutation p.R67C 0.20 tolerated(0.05) probably_damaging(0.998) TCGA-49-4507-01 21 31864110 31864110 C A KRTAP19-3 Missense_Mutation p.G56C 0.27 deleterious_low_confidence(0.03) unknown(0) TCGA-49-4507-01 22 17472980 17472980 G T GAB4 Silent p.S87S 0.18 TCGA-49-4507-01 22 31536292 31536292 C G PLA2G3 Missense_Mutation p.A17P 0.17 deleterious(0.02) possibly_damaging(0.878) TCGA-49-4507-01 22 36723529 36723529 T A MYH9 Silent p.R165R 0.22 TCGA-49-4507-01 2 1093936 1093936 A G SNTG2 Missense_Mutation p.K89E 0.24 deleterious(0) probably_damaging(0.923) TCGA-49-4507-01 2 11484135 11484135 A T ROCK2 Missense_Mutation p.V43E 0.35 deleterious(0.03) benign(0.041) TCGA-49-4507-01 2 122363412 122363412 T A CLASP1 Silent p.R20R 0.27 TCGA-49-4507-01 2 138722049 138722049 C T HNMT 5'UTR 0.25 TCGA-49-4507-01 2 155711649 155711649 C T KCNJ3 Missense_Mutation p.P444S 0.18 tolerated_low_confidence(0.45) benign(0.004) TCGA-49-4507-01 2 185803192 185803192 C A ZNF804A Silent p.I1023I 0.22 TCGA-49-4507-01 2 201785052 201785052 A C ORC2 Silent p.P453P 0.09 TCGA-49-4507-01 2 202149749 202149749 C G CASP8 Missense_Mutation p.S397C 0.17 deleterious(0) probably_damaging(0.988) TCGA-49-4507-01 2 209212732 209212732 G A PIKFYVE Missense_Mutation p.G1787S 0.10 tolerated(0.27) benign(0.09) TCGA-49-4507-01 2 218682516 218682516 C - TNS1 Frame_Shift_Del p.K1410Rfs*44 0.25 TCGA-49-4507-01 2 220028231 220028231 G C SLC23A3 Missense_Mutation p.F448L 0.13 tolerated(0.21) possibly_damaging(0.507) TCGA-49-4507-01 2 232576109 232576109 G T PTMA Missense_Mutation p.A33S 0.25 deleterious(0.03) unknown(0) TCGA-49-4507-01 2 233245131 233245131 G A ALPP Missense_Mutation p.G265D 0.13 tolerated(0.1) benign(0.098) TCGA-49-4507-01 2 67632126 67632126 C G ETAA1 Missense_Mutation p.P771R 0.11 tolerated(0.08) benign(0.04) TCGA-49-4507-01 2 74590188 74590188 C A DCTN1 Missense_Mutation p.Q1154H 0.31 tolerated(0.08) possibly_damaging(0.664) TCGA-49-4507-01 2 74590189 74590189 T A DCTN1 Missense_Mutation p.Q1154L 0.31 deleterious(0.03) benign(0.04) TCGA-49-4507-01 2 74903002 74903002 G T SEMA4F Missense_Mutation p.D537Y 0.30 tolerated(0.14) benign(0.014) TCGA-49-4507-01 2 85770260 85770260 A C MAT2A Intron 0.36 TCGA-49-4507-01 2 98851134 98851134 A G VWA3B Missense_Mutation p.R778G 0.22 deleterious(0) probably_damaging(0.955) TCGA-49-4507-01 3 101283774 101283774 C T TRMT10C Missense_Mutation p.P50L 0.25 tolerated(0.11) benign(0.075) TCGA-49-4507-01 3 101298713 101298713 C A PCNP Missense_Mutation p.S48R 0.29 tolerated_low_confidence(0.06) possibly_damaging(0.783) TCGA-49-4507-01 3 112991383 112991383 C A BOC Missense_Mutation p.A265D 0.10 tolerated(0.16) probably_damaging(0.954) TCGA-49-4507-01 3 113389016 113389016 C T KIAA2018 Silent p.G37G 0.21 TCGA-49-4507-01 3 128623262 128623262 G A ACAD9 Missense_Mutation p.V355I 0.15 tolerated(0.06) possibly_damaging(0.515) TCGA-49-4507-01 3 137717893 137717893 C A CLDN18 Silent p.T61T 0.11 TCGA-49-4507-01 3 167035342 167035342 G T ZBBX Missense_Mutation p.P343T 0.13 tolerated(0.4) benign(0.003) TCGA-49-4507-01 3 172642104 172642104 T C SPATA16 Missense_Mutation p.H411R 0.28 tolerated(0.88) benign(0.402) TCGA-49-4507-01 3 19436596 19436596 G T KCNH8 Missense_Mutation p.V324L 0.33 tolerated(0.29) possibly_damaging(0.872) TCGA-49-4507-01 3 38830506 38830506 C G SCN10A Silent p.T137T 0.21 TCGA-49-4507-01 3 39438031 39438031 G C SLC25A38 3'UTR 0.12 TCGA-49-4507-01 3 42264897 42264897 G T TRAK1 Missense_Mutation p.V844L 0.15 tolerated(0.1) probably_damaging(0.998) TCGA-49-4507-01 3 52470040 52470040 C A SEMA3G Missense_Mutation p.R643L 0.11 tolerated(0.26) probably_damaging(0.984) TCGA-49-4507-01 3 97887972 97887972 G T OR5H15 Silent p.R143R 0.26 TCGA-49-4507-01 4 104061004 104061004 T C CENPE Missense_Mutation p.E2049G 0.32 possibly_damaging(0.859) TCGA-49-4507-01 4 106156700 106156700 G C TET2 Missense_Mutation p.R534T 0.30 deleterious(0.02) benign(0.04) TCGA-49-4507-01 4 106863478 106863478 A C NPNT Missense_Mutation p.M290L 0.39 tolerated(0.11) benign(0.014) TCGA-49-4507-01 4 17506088 17506088 T A QDPR Missense_Mutation p.E70V 0.31 tolerated(0.1) benign(0.237) TCGA-49-4507-01 4 183959036 183959036 G C FAM92A1P2 RNA 0.25 TCGA-49-4507-01 4 7042892 7042892 C A CCDC96 3'UTR 0.39 TCGA-49-4507-01 4 71346522 71346522 G T MUC7 Nonsense_Mutation p.E21* 0.18 TCGA-49-4507-01 5 10256185 10256185 G C CCT5 Missense_Mutation p.K150N 0.10 tolerated(0.16) benign(0.006) TCGA-49-4507-01 5 10256186 10256186 A T CCT5 Missense_Mutation p.I151F 0.12 deleterious(0) possibly_damaging(0.834) TCGA-49-4507-01 5 10258515 10258515 G C CCT5 Missense_Mutation p.K247N 0.15 deleterious(0.01) possibly_damaging(0.593) TCGA-49-4507-01 5 10258621 10258621 G T CCT5 Nonsense_Mutation p.E283* 0.20 TCGA-49-4507-01 5 112178162 112178162 C T APC Nonsense_Mutation p.Q2291* 0.10 TCGA-49-4507-01 5 140307479 140307479 C T PCDHAC1 Silent p.N334N 0.12 TCGA-49-4507-01 5 140595778 140595778 G T PCDHB13 Missense_Mutation p.A695S 0.19 deleterious_low_confidence(0) benign(0.41) TCGA-49-4507-01 5 140768714 140768714 G A PCDHGB4 Silent p.T421T 0.13 TCGA-49-4507-01 5 140802658 140802658 G A PCDHGA11 Missense_Mutation p.E622K 0.11 deleterious_low_confidence(0) benign(0.024) TCGA-49-4507-01 5 176825294 176825294 G T SLC34A1 3'UTR 0.13 TCGA-49-4507-01 5 21752001 21752001 T A CDH12 Missense_Mutation p.S744C 0.11 tolerated(0.06) benign(0.062) TCGA-49-4507-01 5 32379244 32379244 T A ZFR Missense_Mutation p.T938S 0.32 tolerated(0.05) unknown(0) TCGA-49-4507-01 5 53409207 53409207 T A ARL15 Missense_Mutation p.Y96F 0.27 deleterious(0.01) probably_damaging(0.992) TCGA-49-4507-01 5 54654399 54654399 A T SKIV2L2 Splice_Site p.X512_splice 0.19 TCGA-49-4507-01 5 72469059 72469059 C A TMEM174 5'UTR 0.20 TCGA-49-4507-01 5 80388718 80388718 T A RASGRF2 Missense_Mutation p.L497I 0.12 deleterious(0) possibly_damaging(0.483) TCGA-49-4507-01 5 96329658 96329658 C T LNPEP Missense_Mutation p.H464Y 0.18 deleterious(0) probably_damaging(1) TCGA-49-4507-01 6 107854781 107854781 G C SOBP Silent p.A180A 0.14 TCGA-49-4507-01 6 107854782 107854782 G T SOBP Missense_Mutation p.A181S 0.14 deleterious(0.03) probably_damaging(0.998) TCGA-49-4507-01 6 17600920 17600920 G A FAM8A1 Missense_Mutation p.E94K 0.28 deleterious(0.03) probably_damaging(0.959) TCGA-49-4507-01 6 28541412 28541412 C A SCAND3 Missense_Mutation p.G752C 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-49-4507-01 6 31777944 31777944 C G HSPA1L Missense_Mutation p.E602D 0.12 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-49-4507-01 6 44371578 44371578 T G CDC5L Missense_Mutation p.L191R 0.17 deleterious(0) probably_damaging(0.996) TCGA-49-4507-01 6 56462573 56462573 G A DST Nonsense_Mutation p.Q1431* 0.15 TCGA-49-4507-01 6 97679434 97679434 C A MMS22L Missense_Mutation p.C466F 0.12 deleterious(0.02) probably_damaging(0.996) TCGA-49-4507-01 7 100607778 100607778 T A MUC3A Missense_Mutation p.L642Q 0.04 tolerated(0.06) possibly_damaging(0.899) TCGA-49-4507-01 7 100701352 100701352 G T MUC17 3'UTR 0.19 TCGA-49-4507-01 7 120629802 120629802 G T CPED1 Missense_Mutation p.A43S 0.09 tolerated(0.22) benign(0.257) TCGA-49-4507-01 7 128454821 128454821 C G CCDC136 Missense_Mutation p.R965G 0.31 tolerated(0.06) benign(0.047) TCGA-49-4507-01 7 132973716 132973716 G T EXOC4 Missense_Mutation p.C106F 0.11 tolerated(0.11) possibly_damaging(0.863) TCGA-49-4507-01 7 134132119 134132119 G T AKR1B1 Missense_Mutation p.F252L 0.17 tolerated(0.07) benign(0.404) TCGA-49-4507-01 7 147914548 147914548 C A CNTNAP2 Missense_Mutation p.A1060E 0.26 deleterious(0.01) possibly_damaging(0.565) TCGA-49-4507-01 7 150773267 150773267 G A SLC4A2 Missense_Mutation p.M1213I 0.15 tolerated(0.07) benign(0.005) TCGA-49-4507-01 7 19738143 19738143 C A TWISTNB Missense_Mutation p.W271C 0.23 tolerated(0.46) benign(0) TCGA-49-4507-01 7 31378873 31378873 G T NEUROD6 Missense_Mutation p.L4I 0.12 tolerated(0.09) possibly_damaging(0.636) TCGA-49-4507-01 7 44553237 44553237 T A NPC1L1 Missense_Mutation p.N1297Y 0.23 deleterious(0) possibly_damaging(0.521) TCGA-49-4507-01 7 5391678 5391678 C T TNRC18 Missense_Mutation p.A1748T 0.30 benign(0.31) TCGA-49-4507-01 7 66104162 66104162 C T KCTD7 Silent p.L271L 0.13 TCGA-49-4507-01 7 6628266 6628266 C G ZDHHC4 Missense_Mutation p.P254A 0.12 deleterious(0) probably_damaging(1) TCGA-49-4507-01 7 73768246 73768246 G T CLIP2 Missense_Mutation p.G239W 0.08 deleterious(0) probably_damaging(1) TCGA-49-4507-01 7 74565070 74565070 C T GTF2IRD2B Silent p.S939S 0.13 TCGA-49-4507-01 7 75573219 75573219 C T POR Intron 0.30 TCGA-49-4507-01 7 82387923 82387923 T A PCLO Nonsense_Mutation p.K5133* 0.13 TCGA-49-4507-01 7 96637044 96637044 G A DLX6 Silent p.L177L 0.32 TCGA-49-4507-01 7 97922811 97922811 G T BAIAP2L1 3'UTR 0.30 TCGA-49-4507-01 8 107773333 107773333 C T ABRA Missense_Mutation p.V360I 0.16 deleterious(0.01) possibly_damaging(0.849) TCGA-49-4507-01 8 110461710 110461710 A G PKHD1L1 Missense_Mutation p.N2057D 0.17 tolerated(0.06) benign(0.029) TCGA-49-4507-01 8 133036873 133036873 T C OC90 Missense_Mutation p.H430R 0.37 tolerated(0.42) benign(0.004) TCGA-49-4507-01 8 144992968 144992968 C T PLEC Missense_Mutation p.R3811H 0.09 probably_damaging(0.972) TCGA-49-4507-01 8 49647699 49647699 C T EFCAB1 Silent p.K4K 0.13 TCGA-49-4507-01 9 104499870 104499870 G T GRIN3A Missense_Mutation p.A131D 0.10 tolerated(0.13) possibly_damaging(0.851) TCGA-49-4507-01 9 135522364 135522364 G - DDX31 Frame_Shift_Del p.P455Qfs*31 0.30 TCGA-49-4507-01 9 19786748 19786748 G T SLC24A2 Silent p.V39V 0.22 TCGA-49-4507-01 9 34255858 34255858 T C KIF24 Silent p.E1249E 0.26 TCGA-49-4507-01 9 74764526 74764526 C T GDA Silent p.F17F 0.40 TCGA-49-4507-01 9 78506251 78506251 C T PCSK5 Missense_Mutation p.R52C 0.12 deleterious(0) probably_damaging(0.944) TCGA-49-4507-01 9 78686660 78686660 G A PCSK5 Missense_Mutation p.G247E 0.17 deleterious(0) probably_damaging(1) TCGA-49-4507-01 9 78749075 78749075 G T PCSK5 Missense_Mutation p.R420L 0.21 deleterious(0) probably_damaging(0.99) TCGA-49-4507-01 9 91943573 91943573 A T SECISBP2 Splice_Site p.X192_splice 0.14 TCGA-49-4507-01 X 119739399 119739399 T C MCTS1 Missense_Mutation p.V51A 0.21 tolerated(0.11) benign(0.095) TCGA-49-4507-01 X 154722283 154722283 C A TMLHE Intron 0.30 TCGA-49-4507-01 X 16142311 16142311 A G GRPR Missense_Mutation p.I79V 0.13 deleterious(0) benign(0.238) TCGA-49-4507-01 X 27998579 27998579 C A DCAF8L1 Missense_Mutation p.E291D 0.18 deleterious(0) benign(0.045) TCGA-49-4507-01 X 48213500 48213500 G T SSX3 Missense_Mutation p.R72S 0.06 tolerated(0.57) benign(0.007) TCGA-49-4507-01 X 54558956 54558956 G A GNL3L 5'UTR 0.14 TCGA-49-4507-01 X 69366622 69366622 A T IGBP1 Missense_Mutation p.I208F 0.10 deleterious(0) possibly_damaging(0.836) TCGA-49-4507-01 X 69720818 69720818 G A DLG3 Missense_Mutation p.E776K 0.30 deleterious(0) benign(0.012) TCGA-49-4507-01 X 70349021 70349021 A G MED12 Missense_Mutation p.H1178R 0.04 benign(0.034) TCGA-49-4507-01 X 70443955 70443955 G A GJB1 Nonsense_Mutation p.W133* 0.08 TCGA-49-4507-01 X 71424797 71424797 C A ERCC6L 3'UTR 0.81 TCGA-49-4507-01 X 74494131 74494131 C A UPRT Missense_Mutation p.H14Q 0.78 tolerated_low_confidence(0.16) benign(0.086) TCGA-49-4507-01 X 96139803 96139803 A T RPA4 Missense_Mutation p.H165L 0.20 deleterious(0) probably_damaging(0.999) TCGA-49-4510-01 10 29600040 29600040 A G LYZL1 3'UTR 0.06 TCGA-49-4510-01 10 38241751 38241751 T C ZNF25 Silent p.T225T 0.05 TCGA-49-4510-01 11 108236107 108236107 G T ATM Nonsense_Mutation p.E3015* 0.58 TCGA-49-4510-01 11 108383265 108383265 T C EXPH5 Missense_Mutation p.E990G 0.22 tolerated(0.17) probably_damaging(0.999) TCGA-49-4510-01 11 727020 727020 C G EPS8L2 3'UTR 0.77 TCGA-49-4510-01 12 10213811 10213811 G T CLEC9A Missense_Mutation p.K86N 0.35 tolerated(0.21) benign(0.004) TCGA-49-4510-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.50 deleterious(0) benign(0.361) TCGA-49-4510-01 12 32491750 32491750 C G BICD1 Missense_Mutation p.S867R 0.26 deleterious_low_confidence(0.01) benign(0.1) TCGA-49-4510-01 12 442778 442778 C A KDM5A Missense_Mutation p.A510S 0.42 deleterious(0.03) benign(0.106) TCGA-49-4510-01 14 92268648 92268648 A T TC2N Nonsense_Mutation p.L140* 0.65 TCGA-49-4510-01 15 56387452 56387452 C A RFX7 Missense_Mutation p.G825V 0.44 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-49-4510-01 16 56545113 56545113 A G BBS2 Silent p.A143A 0.28 TCGA-49-4510-01 17 10412919 10412919 C A MYH1 Missense_Mutation p.Q490H 0.43 deleterious(0.01) probably_damaging(0.971) TCGA-49-4510-01 17 20805603 20805603 G A RP11-344E13.3 RNA 0.40 TCGA-49-4510-01 17 61988387 61988387 G A CSHL1 Intron 0.25 TCGA-49-4510-01 19 13988193 13988210 CAGCCCTGGAGCCGATGC - NANOS3 In_Frame_Del p.L46_A51del 0.30 TCGA-49-4510-01 19 13988222 13988222 T C NANOS3 Missense_Mutation p.S54P 0.27 tolerated(0.4) benign(0) TCGA-49-4510-01 19 44847409 44847409 G A ZNF112 Silent p.F4F 0.26 TCGA-49-4510-01 1 145282163 145282163 T A NOTCH2NL 3'UTR 0.35 TCGA-49-4510-01 1 145699074 145699074 T A CD160 Silent p.T139T 0.33 TCGA-49-4510-01 1 149936222 149936222 T C OTUD7B Silent p.A219A 0.41 TCGA-49-4510-01 1 160460449 160460449 T G SLAMF6 Missense_Mutation p.K225Q 0.04 tolerated(0.42) benign(0.013) TCGA-49-4510-01 1 171303668 171303668 A T FMO4 Missense_Mutation p.T316S 0.45 tolerated(0.24) probably_damaging(0.974) TCGA-49-4510-01 1 182353654 182353654 G A GLUL Silent p.Y336Y 0.06 TCGA-49-4510-01 1 43650921 43650921 T C WDR65 Missense_Mutation p.I288T 0.37 deleterious(0) benign(0.093) TCGA-49-4510-01 20 36952397 36952397 G A BPI Silent p.G298G 0.36 TCGA-49-4510-01 20 57428785 57428785 C G GNAS Missense_Mutation p.S155R 0.36 deleterious_low_confidence(0) unknown(0) TCGA-49-4510-01 2 109381162 109381162 A T RANBP2 Silent p.P1389P 0.35 TCGA-49-4510-01 2 179247751 179247751 T C OSBPL6 Missense_Mutation p.I566T 0.38 tolerated(0.91) benign(0.205) TCGA-49-4510-01 2 179615912 179615912 T C TTN Intron 0.20 TCGA-49-4510-01 2 45233169 45233169 C G SIX2 3'UTR 0.57 TCGA-49-4510-01 2 73830395 73830395 C T ALMS1 Missense_Mutation p.P4108L 0.30 benign(0.379) TCGA-49-4510-01 2 73830399 73830399 C G ALMS1 Missense_Mutation p.I4109M 0.30 probably_damaging(0.975) TCGA-49-4510-01 2 79314711 79314711 G T REG1B Missense_Mutation p.L10M 0.49 deleterious(0.04) possibly_damaging(0.665) TCGA-49-4510-01 3 101050843 101050843 T C SENP7 Missense_Mutation p.D895G 0.04 tolerated(0.18) benign(0.05) TCGA-49-4510-01 3 122002536 122002536 G A CASR Missense_Mutation p.A589T 0.16 deleterious(0.03) probably_damaging(0.963) TCGA-49-4510-01 3 148562468 148562468 G A CPB1 Missense_Mutation p.R231Q 0.67 deleterious(0) probably_damaging(1) TCGA-49-4510-01 3 170198379 170198379 C A SLC7A14 Silent p.T564T 0.73 TCGA-49-4510-01 3 52441235 52441235 G A BAP1 Missense_Mutation p.R179W 0.50 deleterious(0.02) possibly_damaging(0.848) TCGA-49-4510-01 4 129043234 129043234 C G LARP1B Missense_Mutation p.S472C 0.14 tolerated(0.11) benign(0.12) TCGA-49-4510-01 4 151504477 151504477 T C MAB21L2 Missense_Mutation p.V99A 0.20 tolerated(0.16) possibly_damaging(0.656) TCGA-49-4510-01 4 7032157 7032157 C G TBC1D14 3'UTR 0.24 TCGA-49-4510-01 4 99802265 99802265 G A EIF4E Missense_Mutation p.P221S 0.26 tolerated(0.98) benign(0.155) TCGA-49-4510-01 5 110814095 110814095 C G CAMK4 Missense_Mutation p.P240A 0.05 deleterious(0) probably_damaging(1) TCGA-49-4510-01 5 118183901 118183901 T C DTWD2 Missense_Mutation p.T204A 0.16 tolerated(0.59) benign(0.114) TCGA-49-4510-01 5 140207997 140207997 G T PCDHA6 Missense_Mutation p.E107D 0.36 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-49-4510-01 5 140571984 140571984 C A PCDHB10 5'UTR 0.44 TCGA-49-4510-01 5 15928027 15928027 C A FBXL7 Missense_Mutation p.S52R 0.20 deleterious(0.02) probably_damaging(0.944) TCGA-49-4510-01 5 161112996 161112996 A G GABRA6 Translation_Start_Site p.M1? 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.824) TCGA-49-4510-01 5 33616058 33616058 C A ADAMTS12 Nonsense_Mutation p.G755* 0.37 TCGA-49-4510-01 5 41805723 41805723 C A OXCT1 Missense_Mutation p.V301L 0.31 tolerated(0.65) benign(0) TCGA-49-4510-01 5 64890374 64890374 G C TRIM23 Missense_Mutation p.L507V 0.34 tolerated(0.98) benign(0.062) TCGA-49-4510-01 5 71016433 71016433 G C CARTPT Missense_Mutation p.K114N 0.37 deleterious(0) probably_damaging(0.987) TCGA-49-4510-01 5 80548570 80548570 C A CKMT2 Missense_Mutation p.P70H 0.22 deleterious(0.03) probably_damaging(0.993) TCGA-49-4510-01 6 132874425 132874425 G T TAAR8 Silent p.V198V 0.22 TCGA-49-4510-01 6 143792568 143792568 C T PEX3 Nonsense_Mutation p.Q169* 0.08 TCGA-49-4510-01 6 63989862 63989862 T C LGSN 3'UTR 0.35 TCGA-49-4510-01 6 80409266 80409267 - CCC SH3BGRL2 3'UTR 0.49 TCGA-49-4510-01 7 134225913 134225913 T C AKR1B10 3'UTR 0.18 TCGA-49-4510-01 7 142564781 142564781 G T EPHB6 Missense_Mutation p.G569C 0.16 deleterious(0) probably_damaging(1) TCGA-49-4510-01 7 43484237 43484237 A G HECW1 Missense_Mutation p.E489G 0.42 tolerated_low_confidence(0.09) benign(0.002) TCGA-49-4510-01 7 63982389 63982389 T C ZNF680 Missense_Mutation p.N248S 0.32 tolerated(0.25) possibly_damaging(0.814) TCGA-49-4510-01 8 106813793 106813793 G T ZFPM2 Missense_Mutation p.G495C 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-49-4510-01 8 125499067 125499084 CTGTTTGTCTCTGCTTGC - RNF139 In_Frame_Del p.V395_F400del 0.52 TCGA-49-4510-01 8 125534428 125534428 A G TATDN1 Silent p.D34D 0.04 TCGA-49-4510-01 9 107266550 107266550 C A OR13F1 Missense_Mutation p.P3T 0.40 tolerated(0.32) benign(0) TCGA-49-4510-01 9 134015959 134015959 G C NUP214 Missense_Mutation p.A386P 0.06 unknown(0) TCGA-49-4510-01 9 17298270 17298270 C G CNTLN Missense_Mutation p.Q356E 0.66 tolerated(0.54) possibly_damaging(0.468) TCGA-49-4510-01 X 153648424 153648424 T C TAZ Missense_Mutation p.W213R 0.06 deleterious(0) probably_damaging(0.997) TCGA-49-4512-01 10 7409719 7409719 C T SFMBT2 Missense_Mutation p.G110S 0.13 deleterious(0) probably_damaging(1) TCGA-49-4512-01 11 61508792 61508792 G A DAGLA Silent p.P714P 0.23 TCGA-49-4512-01 11 64011314 64011314 G T FKBP2 Silent p.G111G 0.18 TCGA-49-4512-01 11 64434911 64434911 G A NRXN2 Missense_Mutation p.R537W 0.13 tolerated(0.05) possibly_damaging(0.523) TCGA-49-4512-01 12 75884200 75884201 - A GLIPR1 Frame_Shift_Ins p.S146Kfs*13 0.10 TCGA-49-4512-01 14 64375840 64375840 A C SYNE2 5'UTR 0.08 TCGA-49-4512-01 15 92981770 92981770 G A ST8SIA2 Missense_Mutation p.V160M 0.06 probably_damaging(0.997) TCGA-49-4512-01 16 10788536 10788536 C A TEKT5 Silent p.P65P 0.19 TCGA-49-4512-01 16 51171227 51171227 G A SALL1 Silent p.N1257N 0.07 TCGA-49-4512-01 16 51173150 51173150 G A SALL1 Missense_Mutation p.R995W 0.06 deleterious(0) probably_damaging(0.99) TCGA-49-4512-01 16 68266596 68266596 G A ESRP2 Intron 0.17 TCGA-49-4512-01 16 76486488 76486488 C A CNTNAP4 Missense_Mutation p.D312E 0.06 tolerated(0.06) benign(0.024) TCGA-49-4512-01 16 77398246 77398246 G C ADAMTS18 Missense_Mutation p.L271V 0.05 tolerated(0.27) benign(0.002) TCGA-49-4512-01 16 9857312 9857312 G A GRIN2A Silent p.S1363S 0.19 TCGA-49-4512-01 17 3301440 3301440 C T OR1E1 Missense_Mutation p.D89N 0.12 tolerated(0.38) benign(0.001) TCGA-49-4512-01 17 56166633 56166633 C T DYNLL2 Missense_Mutation p.S88L 0.08 deleterious(0) possibly_damaging(0.862) TCGA-49-4512-01 17 71346817 71346817 G T SDK2 Missense_Mutation p.S1957R 0.18 deleterious(0) probably_damaging(0.998) TCGA-49-4512-01 19 11546862 11546862 C T PRKCSH Intron 0.26 TCGA-49-4512-01 19 16548580 16548580 C T EPS15L1 Splice_Site p.X103_splice 0.18 TCGA-49-4512-01 19 7975197 7975197 G A MAP2K7 Missense_Mutation p.G129D 0.13 deleterious(0) probably_damaging(1) TCGA-49-4512-01 1 110251153 110251153 C T GSTM5 5'Flank 0.21 TCGA-49-4512-01 1 235950598 235950598 G A LYST Silent p.L1588L 0.23 TCGA-49-4512-01 1 76397748 76397748 A T ASB17 Missense_Mutation p.S77T 0.26 tolerated_low_confidence(0.15) possibly_damaging(0.483) TCGA-49-4512-01 2 10130834 10130834 G A GRHL1 Missense_Mutation p.R427Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-49-4512-01 2 107460326 107460326 A G ST6GAL2 Silent p.A36A 0.06 TCGA-49-4512-01 2 133403252 133403252 C G LYPD1 3'UTR 0.24 TCGA-49-4512-01 2 167327178 167327178 G A SCN7A Missense_Mutation p.T204M 0.16 tolerated(0.17) benign(0.001) TCGA-49-4512-01 2 179584290 179584290 G C TTN Missense_Mutation p.H7977D 0.10 TCGA-49-4512-01 2 18766072 18766072 C T NT5C1B Missense_Mutation p.R204Q 0.21 tolerated_low_confidence(0.08) probably_damaging(0.941) TCGA-49-4512-01 2 241073371 241073371 C A MYEOV2 Missense_Mutation p.V70F 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.742) TCGA-49-4512-01 2 37454813 37454813 A G CEBPZ Missense_Mutation p.I508T 0.21 tolerated(0.07) benign(0.028) TCGA-49-4512-01 2 73467659 73467659 C A CCT7 Silent p.S85S 0.11 TCGA-49-4512-01 3 69129290 69129292 CTT - UBA3 In_Frame_Del p.R13del 0.28 TCGA-49-4512-01 4 114170985 114170985 G T ANK2 Missense_Mutation p.L319F 0.22 probably_damaging(0.979) TCGA-49-4512-01 4 164247318 164247318 G A NPY1R Missense_Mutation p.S130F 0.18 deleterious(0) probably_damaging(0.998) TCGA-49-4512-01 4 79410160 79410160 G T FRAS1 Missense_Mutation p.A2962S 0.15 probably_damaging(1) TCGA-49-4512-01 5 156915310 156915310 C T ADAM19 Missense_Mutation p.R838Q 0.10 deleterious(0.02) probably_damaging(1) TCGA-49-4512-01 5 167922429 167922429 A G RARS Missense_Mutation p.Y230C 0.04 tolerated(0.12) probably_damaging(0.951) TCGA-49-4512-01 5 17275411 17275411 C T BASP1 Missense_Mutation p.A29V 0.06 deleterious(0.01) unknown(0) TCGA-49-4512-01 5 24537504 24537504 C T CDH10 Missense_Mutation p.E171K 0.08 deleterious(0) probably_damaging(0.999) TCGA-49-4512-01 5 7706887 7706887 C T ADCY2 Silent p.I380I 0.06 TCGA-49-4512-01 6 15523084 15523084 C A DTNBP1 3'UTR 0.22 TCGA-49-4512-01 6 160679385 160679385 G T SLC22A2 Silent p.I135I 0.08 TCGA-49-4512-01 6 43305942 43305954 TTCTAGAAGCTGA - ZNF318 Frame_Shift_Del p.S1928Lfs*58 0.25 TCGA-49-4512-01 7 91645514 91645514 G A AKAP9 Silent p.E1228E 0.10 TCGA-49-4512-01 8 124693323 124693323 C T ANXA13 3'UTR 0.05 TCGA-49-4512-01 9 100893269 100893269 C G CORO2A Missense_Mutation p.A280P 0.09 tolerated(1) benign(0.007) TCGA-49-4512-01 9 115092722 115092722 T A PTBP3 Intron 0.17 TCGA-49-4512-01 9 123298731 123298731 C T CDK5RAP2 Missense_Mutation p.R194H 0.11 deleterious(0.03) benign(0.008) TCGA-49-4512-01 9 140083651 140083651 A G SSNA1 Silent p.A62A 0.15 TCGA-49-4512-01 9 2719006 2719006 T G KCNV2 Missense_Mutation p.F423V 0.12 deleterious(0.01) benign(0.176) TCGA-49-4512-01 X 125298988 125298988 C T DCAF12L2 Missense_Mutation p.R307Q 0.09 tolerated(0.51) benign(0.052) TCGA-49-4512-01 X 138630531 138630531 G A F9 Missense_Mutation p.C134Y 0.04 deleterious(0) probably_damaging(1) TCGA-49-4512-01 X 20195194 20195194 A G RPS6KA3 Missense_Mutation p.L285P 0.22 tolerated(0.28) probably_damaging(0.995) TCGA-49-4512-01 X 2828021 2828021 C G ARSD Splice_Site p.X379_splice 0.24 TCGA-49-4512-01 X 40569230 40569230 C A MED14 Splice_Site p.X391_splice 0.28 TCGA-49-4512-01 X 54209079 54209079 G A FAM120C Missense_Mutation p.R185C 0.09 deleterious(0) probably_damaging(0.917) TCGA-49-4512-01 X 66931530 66931530 T A AR Silent p.P724P 0.12 TCGA-49-4514-01 10 103898375 103898375 G C PPRC1 Splice_Site p.X115_splice 0.10 TCGA-49-4514-01 10 11363183 11363183 G C CELF2 Silent p.L376L 0.19 TCGA-49-4514-01 10 115606963 115606963 C T DCLRE1A Missense_Mutation p.E753K 0.18 tolerated(1) benign(0.006) TCGA-49-4514-01 10 116605137 116605137 A G FAM160B1 Missense_Mutation p.Y342C 0.16 tolerated(0.17) benign(0.021) TCGA-49-4514-01 10 1230908 1230908 C T ADARB2 Missense_Mutation p.A646T 0.12 tolerated(0.57) benign(0.013) TCGA-49-4514-01 10 17747606 17747606 G A STAM Missense_Mutation p.E359K 0.09 deleterious(0.01) benign(0.271) TCGA-49-4514-01 10 27703039 27703039 G T PTCHD3 Silent p.P47P 0.12 TCGA-49-4514-01 10 35928960 35928960 C T FZD8 Silent p.P466P 0.10 TCGA-49-4514-01 10 43312827 43312827 A T BMS1 Missense_Mutation p.K822M 0.19 deleterious(0.02) possibly_damaging(0.722) TCGA-49-4514-01 10 70506916 70506916 A G CCAR1 Splice_Site p.X173_splice 0.11 TCGA-49-4514-01 10 76789116 76789116 G T KAT6B Missense_Mutation p.A1512S 0.26 benign(0.021) TCGA-49-4514-01 10 77158903 77158903 G A ZNF503 Silent p.I515I 0.14 TCGA-49-4514-01 10 99019290 99019290 G A ARHGAP19 Missense_Mutation p.P237S 0.12 tolerated(0.24) benign(0.06) TCGA-49-4514-01 11 1085772 1085772 G C MUC2 Missense_Mutation p.G898A 0.06 possibly_damaging(0.899) TCGA-49-4514-01 11 124761263 124761263 C T ROBO4 Missense_Mutation p.R627H 0.10 tolerated(0.14) benign(0.001) TCGA-49-4514-01 11 1272929 1272929 C G MUC5B Missense_Mutation p.S4940C 0.19 unknown(0) TCGA-49-4514-01 11 14990398 14990398 C A CALCA Missense_Mutation p.D125Y 0.18 deleterious(0.04) possibly_damaging(0.511) TCGA-49-4514-01 11 17531182 17531182 C A USH1C Silent p.A578A 0.24 TCGA-49-4514-01 11 18159487 18159487 G A MRGPRX3 Nonsense_Mutation p.W246* 0.12 TCGA-49-4514-01 11 2182027 2182027 C T INS-IGF2 Missense_Mutation p.E59K 0.12 deleterious_low_confidence(0.03) possibly_damaging(0.801) TCGA-49-4514-01 11 22399054 22399054 C A SLC17A6 Missense_Mutation p.A506E 0.16 deleterious(0) probably_damaging(0.972) TCGA-49-4514-01 11 34101277 34101277 C T CAPRIN1 Missense_Mutation p.S264L 0.18 tolerated(0.26) benign(0.035) TCGA-49-4514-01 11 34167643 34167643 G A NAT10 Silent p.R994R 0.23 TCGA-49-4514-01 11 4388697 4388697 G C OR52B4 Missense_Mutation p.P277A 0.08 deleterious(0) benign(0.001) TCGA-49-4514-01 11 46917795 46917795 A T LRP4 Silent p.G338G 0.16 TCGA-49-4514-01 11 4825626 4825626 G T OR52R1 5'Flank 0.15 TCGA-49-4514-01 11 5020955 5020955 G C OR51L1 Missense_Mutation p.C248S 0.18 tolerated(0.11) benign(0.033) TCGA-49-4514-01 11 55038289 55038289 C A TRIM48 3'UTR 0.32 TCGA-49-4514-01 11 55418616 55418616 G C OR4S2 Missense_Mutation p.M79I 0.18 deleterious(0.01) benign(0.03) TCGA-49-4514-01 11 55433216 55433216 A G OR4C6 Missense_Mutation p.I192V 0.19 tolerated_low_confidence(0.37) benign(0.005) TCGA-49-4514-01 11 55595424 55595424 C A OR5L2 Missense_Mutation p.H244N 0.09 deleterious(0) probably_damaging(0.999) TCGA-49-4514-01 11 55761176 55761176 C AT OR5F1 Frame_Shift_Ins p.R309Nfs*? 0.23 TCGA-49-4514-01 11 56127760 56127760 T C OR8J1 Missense_Mutation p.I13T 0.15 deleterious(0.01) possibly_damaging(0.493) TCGA-49-4514-01 11 58126125 58126126 CA - OR5B17 Frame_Shift_Del p.A140Lfs*38 0.20 TCGA-49-4514-01 11 60215231 60215231 G T MS4A5 Nonstop_Mutation p.*201Lext*4 0.16 TCGA-49-4514-01 11 60482498 60482498 C T MS4A8 Missense_Mutation p.P180L 0.14 tolerated(0.07) possibly_damaging(0.575) TCGA-49-4514-01 11 62299707 62299707 C A AHNAK Missense_Mutation p.G728C 0.16 probably_damaging(0.997) TCGA-49-4514-01 11 65423106 65423106 C T RELA Intron 0.33 TCGA-49-4514-01 11 72289312 72289312 G T PDE2A Silent p.I860I 0.18 TCGA-49-4514-01 11 74876893 74876893 G T SLCO2B1 Missense_Mutation p.R116L 0.15 deleterious(0) probably_damaging(1) TCGA-49-4514-01 11 74880441 74880441 C T SLCO2B1 Silent p.P224P 0.14 TCGA-49-4514-01 11 89018116 89018116 G A TYR Missense_Mutation p.D454N 0.17 tolerated(0.14) benign(0.008) TCGA-49-4514-01 11 89537259 89537259 G A TRIM49 Missense_Mutation p.R127C 0.12 tolerated(1) benign(0.001) TCGA-49-4514-01 11 92616312 92616312 C A FAT3 Silent p.V4230V 0.16 TCGA-49-4514-01 11 92616507 92616507 C A FAT3 Nonsense_Mutation p.C4295* 0.22 TCGA-49-4514-01 11 981252 981252 G C AP2A2 Missense_Mutation p.E220Q 0.09 tolerated(0.07) benign(0.019) TCGA-49-4514-01 12 100453138 100453138 T A UHRF1BP1L Silent p.T639T 0.12 TCGA-49-4514-01 12 1005335 1005335 G A WNK1 Silent p.V1894V 0.38 TCGA-49-4514-01 12 102122937 102122937 C T SYCP3 Missense_Mutation p.E203K 0.15 deleterious(0.03) probably_damaging(0.967) TCGA-49-4514-01 12 113344789 113344789 G C OAS1 5'UTR 0.17 TCGA-49-4514-01 12 120587749 120587749 C T GCN1L1 Missense_Mutation p.D1470N 0.16 probably_damaging(0.998) TCGA-49-4514-01 12 123892056 123892056 G C SETD8 Missense_Mutation p.E289Q 0.12 deleterious(0) probably_damaging(0.998) TCGA-49-4514-01 12 129558563 129558563 C T TMEM132D Missense_Mutation p.V1053I 0.16 tolerated(1) benign(0.002) TCGA-49-4514-01 12 132262626 132262626 C T SFSWAP Missense_Mutation p.P720L 0.13 deleterious(0.05) possibly_damaging(0.851) TCGA-49-4514-01 12 132688113 132688113 G T GALNT9 Silent p.A34A 0.11 TCGA-49-4514-01 12 13906652 13906652 G A GRIN2B Silent p.L203L 0.13 TCGA-49-4514-01 12 2927444 2927444 G A ITFG2 Splice_Site p.X136_splice 0.09 TCGA-49-4514-01 12 33592449 33592449 G A SYT10 Silent p.F3F 0.11 TCGA-49-4514-01 12 39763679 39763679 C A KIF21A Missense_Mutation p.G101V 0.11 deleterious(0) possibly_damaging(0.489) TCGA-49-4514-01 12 48370306 48370306 A T COL2A1 Silent p.S1160S 0.11 TCGA-49-4514-01 12 50498490 50498490 G A GPD1 Missense_Mutation p.E59K 0.16 deleterious(0) probably_damaging(0.964) TCGA-49-4514-01 12 53242431 53242431 G T KRT78 Missense_Mutation p.P95Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-49-4514-01 12 53242432 53242432 G T KRT78 Missense_Mutation p.P95T 0.22 deleterious(0) probably_damaging(0.999) TCGA-49-4514-01 12 54115361 54115361 C G CALCOCO1 Missense_Mutation p.R216S 0.14 deleterious(0.02) possibly_damaging(0.777) TCGA-49-4514-01 12 56567617 56567617 C T SMARCC2 Missense_Mutation p.E505K 0.17 deleterious(0) possibly_damaging(0.621) TCGA-49-4514-01 12 6232097 6232097 C A VWF Intron 0.14 TCGA-49-4514-01 12 70732251 70732251 C T CNOT2 Missense_Mutation p.S310L 0.12 tolerated(0.1) benign(0.03) TCGA-49-4514-01 12 71286464 71286464 C T PTPRR Missense_Mutation p.V118M 0.11 deleterious_low_confidence(0) benign(0.395) TCGA-49-4514-01 12 7178038 7178038 C T C1S 3'UTR 0.26 TCGA-49-4514-01 12 78513530 78513530 G C NAV3 Missense_Mutation p.G1185A 0.19 tolerated(0.35) probably_damaging(0.991) TCGA-49-4514-01 12 81102736 81102736 G C MYF6 Missense_Mutation p.K242N 0.17 tolerated_low_confidence(0.48) probably_damaging(0.981) TCGA-49-4514-01 13 101753132 101753132 T C NALCN Intron 0.15 TCGA-49-4514-01 13 114535424 114535424 C T GAS6 Missense_Mutation p.E331K 0.21 deleterious(0) probably_damaging(0.99) TCGA-49-4514-01 13 23904722 23904722 C T SACS Silent p.R4431R 0.13 TCGA-49-4514-01 13 30106979 30106979 T C SLC7A1 Missense_Mutation p.I171V 0.14 deleterious(0.03) possibly_damaging(0.639) TCGA-49-4514-01 13 33268412 33268412 G A PDS5B Missense_Mutation p.D508N 0.17 tolerated(0.07) benign(0.07) TCGA-49-4514-01 13 39262739 39262739 G C FREM2 Missense_Mutation p.A420P 0.16 deleterious(0.02) possibly_damaging(0.701) TCGA-49-4514-01 13 41704889 41704889 C T KBTBD6 Missense_Mutation p.E587K 0.11 deleterious(0.01) possibly_damaging(0.611) TCGA-49-4514-01 13 45149890 45149890 C G TSC22D1 Missense_Mutation p.K107N 0.16 deleterious(0) probably_damaging(0.996) TCGA-49-4514-01 13 52639651 52639651 G A NEK5 Silent p.D673D 0.18 TCGA-49-4514-01 13 53624888 53624888 C A OLFM4 Silent p.V505V 0.12 TCGA-49-4514-01 14 106235882 106235882 G T IGHG3 Missense_Mutation p.P276T 0.19 deleterious(0) probably_damaging(0.998) TCGA-49-4514-01 14 23853733 23853733 A T MYH6 Missense_Mutation p.L1828Q 0.30 deleterious(0) probably_damaging(0.953) TCGA-49-4514-01 14 24707945 24707945 C T GMPR2 Silent p.V354V 0.13 TCGA-49-4514-01 14 31792927 31792927 G A HEATR5A Missense_Mutation p.R1211C 0.22 tolerated(0.06) benign(0.105) TCGA-49-4514-01 14 36143822 36143822 C G RALGAPA1 Missense_Mutation p.R1067T 0.26 deleterious(0) probably_damaging(0.995) TCGA-49-4514-01 14 52433384 52433384 G T GNG2 Missense_Mutation p.K65N 0.22 deleterious(0.03) possibly_damaging(0.737) TCGA-49-4514-01 14 55169444 55169444 G T SAMD4A Intron 0.39 TCGA-49-4514-01 14 55169445 55169445 G T SAMD4A Intron 0.36 TCGA-49-4514-01 14 58605023 58605023 C A C14orf37 Missense_Mutation p.G352C 0.17 deleterious(0.01) probably_damaging(0.984) TCGA-49-4514-01 14 58605024 58605024 C A C14orf37 Missense_Mutation p.E351D 0.17 tolerated(0.64) benign(0.388) TCGA-49-4514-01 14 60193817 60193817 C T RTN1 Missense_Mutation p.E529K 0.33 tolerated(0.54) benign(0.009) TCGA-49-4514-01 15 22866791 22866791 C A TUBGCP5 Silent p.L801L 0.12 TCGA-49-4514-01 15 25963457 25963457 C T ATP10A Missense_Mutation p.G485S 0.17 tolerated(0.43) benign(0.019) TCGA-49-4514-01 15 31819497 31819497 G C OTUD7A Missense_Mutation p.H223D 0.20 deleterious(0) probably_damaging(0.997) TCGA-49-4514-01 15 31851205 31851205 C T OTUD7A Missense_Mutation p.E173K 0.17 deleterious(0) probably_damaging(0.991) TCGA-49-4514-01 15 84255823 84255823 G A SH3GL3 Missense_Mutation p.S238N 0.38 tolerated(0.27) benign(0.001) TCGA-49-4514-01 15 88483966 88483966 C A NTRK3 Missense_Mutation p.R535M 0.19 deleterious(0) probably_damaging(0.942) TCGA-49-4514-01 15 91505103 91505103 C T RCCD1 3'UTR 0.28 TCGA-49-4514-01 15 96877535 96877535 G T NR2F2 Nonsense_Mutation p.E225* 0.40 TCGA-49-4514-01 16 14340374 14340374 G T MKL2 Silent p.V419V 0.14 TCGA-49-4514-01 16 14951444 14951444 C G NOMO1 Silent p.L384L 0.12 TCGA-49-4514-01 16 25255245 25255245 C A ZKSCAN2 Missense_Mutation p.Q614H 0.16 deleterious(0.04) possibly_damaging(0.778) TCGA-49-4514-01 16 27221735 27221735 C T KDM8 Silent p.I135I 0.13 TCGA-49-4514-01 16 2815417 2815417 C T SRRM2 Missense_Mutation p.R1630W 0.24 unknown(0) TCGA-49-4514-01 16 2815544 2815544 C - SRRM2 Frame_Shift_Del p.R1673Gfs*25 0.23 TCGA-49-4514-01 16 28167672 28167672 T C XPO6 Missense_Mutation p.I274V 0.19 tolerated(0.27) benign(0.405) TCGA-49-4514-01 16 28620117 28620117 G A SULT1A1 Silent p.L20L 0.09 TCGA-49-4514-01 16 28995569 28995569 G T SPNS1 Silent p.V512V 0.09 TCGA-49-4514-01 16 31088711 31088711 G A ZNF646 Missense_Mutation p.E356K 0.12 deleterious(0.01) benign(0.001) TCGA-49-4514-01 16 48256677 48256677 C T ABCC11 Silent p.V203V 0.16 TCGA-49-4514-01 16 56485055 56485055 G A NUDT21 Silent p.F20F 0.13 TCGA-49-4514-01 16 61851450 61851450 C A CDH8 Missense_Mutation p.A404S 0.16 tolerated(0.13) probably_damaging(0.926) TCGA-49-4514-01 16 67763221 67763221 C A RANBP10 Missense_Mutation p.K438N 0.13 tolerated(0.32) possibly_damaging(0.899) TCGA-49-4514-01 16 68721600 68721600 G T CDH3 Missense_Mutation p.D586Y 0.18 deleterious(0.01) probably_damaging(0.962) TCGA-49-4514-01 16 7568296 7568296 C A RBFOX1 Missense_Mutation p.P79T 0.20 deleterious(0) possibly_damaging(0.46) TCGA-49-4514-01 16 7629920 7629920 G T RBFOX1 Missense_Mutation p.G158C 0.25 deleterious(0) probably_damaging(0.987) TCGA-49-4514-01 16 77359817 77359817 T A ADAMTS18 Missense_Mutation p.S660C 0.23 deleterious(0) possibly_damaging(0.806) TCGA-49-4514-01 16 9858390 9858390 G T GRIN2A Missense_Mutation p.S1004Y 0.21 tolerated(0.07) possibly_damaging(0.744) TCGA-49-4514-01 17 10299657 10299657 T A MYH8 Missense_Mutation p.E1548V 0.15 deleterious(0.01) probably_damaging(0.968) TCGA-49-4514-01 17 10351278 10351278 C T MYH4 Missense_Mutation p.E1608K 0.05 deleterious(0.02) probably_damaging(0.994) TCGA-49-4514-01 17 11671895 11671895 G T DNAH9 Missense_Mutation p.W2432C 0.09 probably_damaging(0.999) TCGA-49-4514-01 17 19555892 19555892 A T ALDH3A2 Missense_Mutation p.S140C 0.22 tolerated(0.07) possibly_damaging(0.722) TCGA-49-4514-01 17 26732045 26732045 G C SLC46A1 Missense_Mutation p.L224V 0.24 tolerated(0.19) benign(0.036) TCGA-49-4514-01 17 26962061 26962061 C T KIAA0100 Silent p.L848L 0.14 TCGA-49-4514-01 17 38926533 38926533 A G KRT26 Missense_Mutation p.L218S 0.18 deleterious(0.01) benign(0.407) TCGA-49-4514-01 17 39032579 39032579 C G KRT20 3'UTR 0.16 TCGA-49-4514-01 17 40259997 40259997 C T DHX58 Intron 0.17 TCGA-49-4514-01 17 40985622 40985622 G T PSME3 5'UTR 0.12 TCGA-49-4514-01 17 43332645 43332645 C T SPATA32 Missense_Mutation p.E302K 0.23 tolerated(0.29) benign(0.267) TCGA-49-4514-01 17 47656116 47656116 G T NXPH3 Silent p.P71P 0.13 TCGA-49-4514-01 17 58571907 58571907 G C APPBP2 Nonsense_Mutation p.S100* 0.13 TCGA-49-4514-01 17 61973979 61973979 T C CSH1 5'UTR 0.14 TCGA-49-4514-01 17 64881158 64881158 A T CACNG5 Missense_Mutation p.Y210F 0.14 tolerated(0.1) probably_damaging(0.978) TCGA-49-4514-01 17 72943237 72943237 C T OTOP3 Silent p.I429I 0.23 TCGA-49-4514-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.38 tolerated(0.11) benign(0.308) TCGA-49-4514-01 17 79058648 79058648 G A BAIAP2 Silent p.Q78Q 0.15 TCGA-49-4514-01 17 80772804 80772804 G T TBCD Missense_Mutation p.V438L 0.18 deleterious(0.05) benign(0.021) TCGA-49-4514-01 18 13124735 13124735 T G CEP192 Missense_Mutation p.I2527S 0.16 deleterious(0) possibly_damaging(0.888) TCGA-49-4514-01 18 25570157 25570157 G C CDH2 Missense_Mutation p.P501R 0.18 tolerated(0.39) possibly_damaging(0.791) TCGA-49-4514-01 18 42530624 42530624 G T SETBP1 Missense_Mutation p.G440V 0.16 tolerated(0.08) benign(0.059) TCGA-49-4514-01 18 61058216 61058216 C T VPS4B Missense_Mutation p.E443K 0.14 deleterious(0.02) probably_damaging(0.97) TCGA-49-4514-01 18 9195663 9195663 C T ANKRD12 Missense_Mutation p.P68S 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-49-4514-01 19 10600447 10600447 G T KEAP1 Missense_Mutation p.R470S 0.20 tolerated(0.1) possibly_damaging(0.876) TCGA-49-4514-01 19 12975954 12975954 C G MAST1 Missense_Mutation p.H534D 0.26 deleterious(0) probably_damaging(0.91) TCGA-49-4514-01 19 19368865 19368865 C A HAPLN4 Missense_Mutation p.A324S 0.27 tolerated(0.06) benign(0.087) TCGA-49-4514-01 19 19369648 19369648 G A HAPLN4 Silent p.Y167Y 0.25 TCGA-49-4514-01 19 22817242 22817242 C T ZNF492 5'UTR 0.10 TCGA-49-4514-01 19 35612270 35612270 G T FXYD3 Intron 0.30 TCGA-49-4514-01 19 36051326 36051326 G T ATP4A Nonsense_Mutation p.C242* 0.11 TCGA-49-4514-01 19 39996085 39996085 C T DLL3 Missense_Mutation p.R363C 0.12 tolerated(0.05) probably_damaging(0.956) TCGA-49-4514-01 19 43262225 43262225 C G PSG8 Missense_Mutation p.G213A 0.14 deleterious(0.03) probably_damaging(0.992) TCGA-49-4514-01 19 43421920 43421920 A G PSG6 Missense_Mutation p.C9R 0.11 tolerated(0.37) benign(0.275) TCGA-49-4514-01 19 43576027 43576027 C A PSG2 Silent p.A263A 0.14 TCGA-49-4514-01 19 51645668 51645668 G C SIGLEC7 Missense_Mutation p.E14D 0.10 tolerated(0.1) benign(0.106) TCGA-49-4514-01 19 52447376 52447376 C G ZNF613 Missense_Mutation p.I80M 0.19 tolerated(0.12) benign(0.019) TCGA-49-4514-01 19 54705039 54705039 G A RPS9 5'UTR 0.23 TCGA-49-4514-01 19 55711859 55711859 C A PTPRH Missense_Mutation p.V389L 0.16 possibly_damaging(0.734) TCGA-49-4514-01 19 56370564 56370564 T A NLRP4 Missense_Mutation p.L602H 0.19 deleterious(0) probably_damaging(0.997) TCGA-49-4514-01 19 57646704 57646704 G T ZIM3 Missense_Mutation p.P334H 0.18 deleterious(0) probably_damaging(0.999) TCGA-49-4514-01 19 6422415 6422415 C T KHSRP Silent p.T94T 0.20 TCGA-49-4514-01 19 9065535 9065535 G T MUC16 Missense_Mutation p.S7304Y 0.24 unknown(0) TCGA-49-4514-01 1 100356810 100356810 G T AGL Missense_Mutation p.K949N 0.25 tolerated(0.88) benign(0.001) TCGA-49-4514-01 1 12640463 12640463 C G DHRS3 Intron 0.31 TCGA-49-4514-01 1 1309389 1309389 T C AURKAIP1 Silent p.R163R 0.24 TCGA-49-4514-01 1 145663206 145663206 C G RNF115 Silent p.P89P 0.24 TCGA-49-4514-01 1 152276956 152276956 G T FLG Missense_Mutation p.S3469Y 0.18 unknown(0) TCGA-49-4514-01 1 155874261 155874261 C A RIT1 Missense_Mutation p.M107I 0.20 tolerated(0.07) probably_damaging(0.956) TCGA-49-4514-01 1 155880281 155880281 G A RIT1 Silent p.F58F 0.11 TCGA-49-4514-01 1 156814999 156814999 C A INSRR Missense_Mutation p.R769L 0.15 deleterious(0.03) possibly_damaging(0.779) TCGA-49-4514-01 1 157716565 157716565 C A FCRL2 Splice_Site p.X497_splice 0.19 TCGA-49-4514-01 1 157804207 157804207 G C CD5L Silent p.V236V 0.12 TCGA-49-4514-01 1 158596722 158596722 C A SPTA1 Missense_Mutation p.A1914S 0.15 tolerated(0.71) benign(0.054) TCGA-49-4514-01 1 159169551 159169551 G T CADM3 Silent p.P355P 0.17 TCGA-49-4514-01 1 159175986 159175986 T C DARC Missense_Mutation p.W255R 0.20 deleterious(0) probably_damaging(1) TCGA-49-4514-01 1 160385936 160385936 C A VANGL2 Silent p.P52P 0.12 TCGA-49-4514-01 1 179660081 179660081 G A TDRD5 3'UTR 0.19 TCGA-49-4514-01 1 186023062 186023062 G T HMCN1 Missense_Mutation p.C2269F 0.13 possibly_damaging(0.817) TCGA-49-4514-01 1 18691759 18691759 C A IGSF21 Missense_Mutation p.L195I 0.16 tolerated(0.13) benign(0.093) TCGA-49-4514-01 1 196459025 196459025 C A KCNT2 Missense_Mutation p.S73I 0.12 deleterious(0.03) benign(0.002) TCGA-49-4514-01 1 197021794 197021794 C - F13B Frame_Shift_Del p.E509Kfs*2 0.12 TCGA-49-4514-01 1 197021821 197021821 C A F13B Nonsense_Mutation p.E500* 0.14 TCGA-49-4514-01 1 197113130 197113130 T C ASPM Missense_Mutation p.Q133R 0.19 deleterious(0) possibly_damaging(0.776) TCGA-49-4514-01 1 200574420 200574420 G T KIF14 Silent p.T579T 0.17 TCGA-49-4514-01 1 201104701 201104701 C A TMEM9 3'UTR 0.26 TCGA-49-4514-01 1 215972398 215972398 C T USH2A Missense_Mutation p.R3270K 0.18 benign(0.003) TCGA-49-4514-01 1 216496818 216496818 C - USH2A Frame_Shift_Del p.R517Dfs*74 0.10 TCGA-49-4514-01 1 216692692 216692692 C G ESRRG Missense_Mutation p.G324R 0.15 tolerated(0.23) benign(0.439) TCGA-49-4514-01 1 228432156 228432156 T C OBSCN Missense_Mutation p.M1214T 0.12 benign(0.244) TCGA-49-4514-01 1 233518100 233518100 C T MLK4 Silent p.C918C 0.16 TCGA-49-4514-01 1 235972070 235972070 G C LYST Missense_Mutation p.S683C 0.14 deleterious(0.02) benign(0.003) TCGA-49-4514-01 1 237919600 237919600 G A RYR2 Missense_Mutation p.E3720K 0.26 benign(0.088) TCGA-49-4514-01 1 238090506 238090506 C A RP11-193H5.1 RNA 0.07 TCGA-49-4514-01 1 241099977 241099977 C A RGS7 Missense_Mutation p.A86S 0.18 tolerated(0.2) benign(0.041) TCGA-49-4514-01 1 242159524 242159524 C A MAP1LC3C Nonsense_Mutation p.E129* 0.07 TCGA-49-4514-01 1 246829096 246829096 C T CNST Silent p.F689F 0.13 TCGA-49-4514-01 1 247694862 247694862 C A OR2C3 Missense_Mutation p.A318S 0.08 tolerated_low_confidence(0.09) benign(0.023) TCGA-49-4514-01 1 247836020 247836020 C G OR13G1 Missense_Mutation p.E108D 0.13 deleterious(0.01) possibly_damaging(0.732) TCGA-49-4514-01 1 53446082 53446082 G A SCP2 Missense_Mutation p.M280I 0.21 deleterious(0.01) benign(0.023) TCGA-49-4514-01 1 65098409 65098409 A G CACHD1 Missense_Mutation p.I207V 0.12 deleterious(0.03) benign(0.007) TCGA-49-4514-01 1 67147549 67147549 C A SGIP1 Intron 0.13 TCGA-49-4514-01 1 70819936 70819936 C T ANKRD13C Silent p.K52K 0.13 TCGA-49-4514-01 20 17602407 17602407 C T RRBP1 Silent p.E651E 0.08 TCGA-49-4514-01 20 21314221 21314221 G C XRN2 Missense_Mutation p.E300Q 0.12 tolerated(0.32) benign(0.074) TCGA-49-4514-01 20 24646222 24646222 C A SYNDIG1 3'UTR 0.16 TCGA-49-4514-01 20 29965242 29965242 C G DEFB118 3'Flank 0.17 TCGA-49-4514-01 20 36874333 36874333 A T KIAA1755 Missense_Mutation p.C67S 0.16 deleterious(0) probably_damaging(0.995) TCGA-49-4514-01 20 42338633 42338633 G T MYBL2 Missense_Mutation p.M512I 0.12 deleterious(0.04) benign(0.098) TCGA-49-4514-01 20 43703736 43703736 G C STK4 Missense_Mutation p.E461D 0.11 tolerated(0.15) benign(0.232) TCGA-49-4514-01 20 44987153 44987153 G A SLC35C2 5'UTR 0.14 TCGA-49-4514-01 20 50048903 50048903 G A NFATC2 Missense_Mutation p.S808L 0.15 deleterious(0.04) possibly_damaging(0.449) TCGA-49-4514-01 20 52198638 52198638 G T ZNF217 Missense_Mutation p.A243D 0.13 tolerated(0.12) benign(0.303) TCGA-49-4514-01 20 55209278 55209278 G A TFAP2C Silent p.G292G 0.30 TCGA-49-4514-01 20 56073662 56073662 C G CTCFL Missense_Mutation p.E646Q 0.12 tolerated(0.06) benign(0.012) TCGA-49-4514-01 20 56090879 56090879 C G CTCFL Missense_Mutation p.L357F 0.16 deleterious(0.02) probably_damaging(0.956) TCGA-49-4514-01 20 61513077 61513077 C G DIDO1 Missense_Mutation p.E1411Q 0.07 benign(0.025) TCGA-49-4514-01 21 27066141 27066141 G A JAM2 Silent p.G105G 0.16 TCGA-49-4514-01 21 31709806 31709806 G T KRTAP27-1 Missense_Mutation p.Q61K 0.15 tolerated(0.48) benign(0.064) TCGA-49-4514-01 21 39755277 39755277 C T ERG 3'UTR 0.27 TCGA-49-4514-01 21 46047816 46047816 G T KRTAP10-9 Missense_Mutation p.C243F 0.22 deleterious(0) possibly_damaging(0.553) TCGA-49-4514-01 22 23438485 23438485 C T GNAZ Silent p.D201D 0.12 TCGA-49-4514-01 22 29130657 29130657 C G CHEK2 Missense_Mutation p.C18S 0.26 tolerated_low_confidence(0.6) benign(0.001) TCGA-49-4514-01 22 37272127 37272127 A T NCF4 3'UTR 0.17 TCGA-49-4514-01 22 42607837 42607837 C T TCF20 Missense_Mutation p.E1159K 0.17 benign(0.201) TCGA-49-4514-01 22 44073894 44073894 C G EFCAB6 Silent p.L467L 0.14 TCGA-49-4514-01 22 45755800 45755800 T A SMC1B Missense_Mutation p.Q916L 0.15 deleterious(0) possibly_damaging(0.535) TCGA-49-4514-01 2 105654526 105654526 C G MRPS9 5'UTR 0.21 TCGA-49-4514-01 2 131521473 131521473 G A AMER3 Missense_Mutation p.E610K 0.15 tolerated(0.11) benign(0.01) TCGA-49-4514-01 2 135119848 135119848 C A MGAT5 Missense_Mutation p.H417N 0.16 deleterious(0) probably_damaging(0.992) TCGA-49-4514-01 2 152663418 152663418 T C ARL5A Silent p.A136A 0.17 TCGA-49-4514-01 2 163279773 163279773 C T KCNH7 Intron 0.07 TCGA-49-4514-01 2 179438298 179438298 G C TTN Silent p.L24187L 0.15 TCGA-49-4514-01 2 179455351 179455351 C A TTN Silent p.R20367R 0.18 TCGA-49-4514-01 2 179466608 179466608 C G TTN Splice_Site p.X18434_splice 0.20 TCGA-49-4514-01 2 179584073 179584073 G A TTN Missense_Mutation p.S8015L 0.17 TCGA-49-4514-01 2 187694578 187694578 C A ZSWIM2 Missense_Mutation p.R324I 0.12 deleterious(0) benign(0.278) TCGA-49-4514-01 2 189859511 189859511 C A COL3A1 Missense_Mutation p.P470H 0.16 unknown(0) TCGA-49-4514-01 2 215274946 215274946 C A SPAG16 Silent p.G601G 0.20 TCGA-49-4514-01 2 215855551 215855551 C T ABCA12 Missense_Mutation p.V1167I 0.17 tolerated(0.05) possibly_damaging(0.626) TCGA-49-4514-01 2 220353374 220353374 C A SPEG Silent p.T2671T 0.08 TCGA-49-4514-01 2 227661440 227661440 G C IRS1 Missense_Mutation p.S672C 0.10 deleterious(0.01) probably_damaging(0.993) TCGA-49-4514-01 2 232322434 232322434 C A NCL Missense_Mutation p.G456V 0.08 probably_damaging(1) TCGA-49-4514-01 2 232322435 232322435 C A NCL Missense_Mutation p.G456W 0.08 probably_damaging(1) TCGA-49-4514-01 2 232322437 232322437 T A NCL Missense_Mutation p.D455V 0.09 probably_damaging(0.911) TCGA-49-4514-01 2 37406698 37406698 A T SULT6B1 Missense_Mutation p.D106E 0.27 deleterious(0) probably_damaging(0.999) TCGA-49-4514-01 2 50850703 50850703 C A NRXN1 Missense_Mutation p.D328Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-49-4514-01 2 54045061 54045061 C A ERLEC1 Silent p.I469I 0.15 TCGA-49-4514-01 2 55874526 55874526 C A PNPT1 Nonsense_Mutation p.E520* 0.20 TCGA-49-4514-01 2 73680829 73680829 C T ALMS1 Missense_Mutation p.P2391L 0.20 probably_damaging(0.993) TCGA-49-4514-01 2 80529996 80529996 C A LRRTM1 Missense_Mutation p.D317Y 0.17 tolerated(0.07) possibly_damaging(0.564) TCGA-49-4514-01 2 97019094 97019094 G T NCAPH Missense_Mutation p.G321W 0.09 deleterious(0) probably_damaging(0.998) TCGA-49-4514-01 2 97509718 97509718 G A ANKRD23 Silent p.I4I 0.18 TCGA-49-4514-01 3 108271090 108271090 C G KIAA1524 Missense_Mutation p.L846F 0.12 deleterious(0.01) possibly_damaging(0.891) TCGA-49-4514-01 3 121351263 121351263 T A HCLS1 Missense_Mutation p.R386W 0.15 deleterious(0.02) possibly_damaging(0.675) TCGA-49-4514-01 3 122646762 122646762 G A SEMA5B Missense_Mutation p.S296F 0.06 deleterious(0) probably_damaging(0.921) TCGA-49-4514-01 3 124731533 124731533 T A HEG1 Nonsense_Mutation p.K964* 0.21 TCGA-49-4514-01 3 130873949 130873949 C T NEK11 Missense_Mutation p.H316Y 0.14 tolerated(1) benign(0.002) TCGA-49-4514-01 3 137783472 137783472 G A DZIP1L Nonsense_Mutation p.Q714* 0.13 TCGA-49-4514-01 3 150421725 150421725 C T FAM194A 5'UTR 0.09 TCGA-49-4514-01 3 156396125 156396125 C T TIPARP Silent p.D213D 0.26 TCGA-49-4514-01 3 164780173 164780173 G A SI Nonsense_Mutation p.Q336* 0.14 TCGA-49-4514-01 3 17056292 17056292 G T PLCL2 Silent p.G843G 0.23 TCGA-49-4514-01 3 195475820 195475820 A G MUC4 Silent p.C5329C 0.06 TCGA-49-4514-01 3 195712633 195712633 G A SDHAP1 RNA 0.13 TCGA-49-4514-01 3 25672356 25672356 C A TOP2B Missense_Mutation p.K442N 0.16 deleterious(0) benign(0.269) TCGA-49-4514-01 3 41961235 41961235 C - ULK4 Frame_Shift_Del p.G206Afs*22 0.18 TCGA-49-4514-01 3 42781129 42781129 G A CCDC13 Silent p.L387L 0.12 TCGA-49-4514-01 3 44951754 44951754 C A TGM4 Silent p.A500A 0.21 TCGA-49-4514-01 3 47465464 47465464 G C SCAP Nonsense_Mutation p.S370* 0.13 TCGA-49-4514-01 3 47618951 47618951 G T CSPG5 Missense_Mutation p.P189T 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.661) TCGA-49-4514-01 3 98110219 98110219 C A OR5K3 Missense_Mutation p.S237Y 0.13 deleterious(0.01) possibly_damaging(0.624) TCGA-49-4514-01 4 100062826 100062826 G T ADH4 Missense_Mutation p.A43D 0.17 deleterious(0) probably_damaging(1) TCGA-49-4514-01 4 107846973 107846973 C A DKK2 Missense_Mutation p.S119I 0.13 deleterious(0) benign(0.291) TCGA-49-4514-01 4 110790971 110790971 G C LRIT3 Missense_Mutation p.D356H 0.14 deleterious(0.03) possibly_damaging(0.805) TCGA-49-4514-01 4 123140583 123140583 C G KIAA1109 Missense_Mutation p.S779C 0.17 possibly_damaging(0.885) TCGA-49-4514-01 4 139966314 139966314 G C CCRN4L Missense_Mutation p.E328Q 0.13 deleterious(0.01) possibly_damaging(0.507) TCGA-49-4514-01 4 151749341 151749341 G T LRBA Missense_Mutation p.S1721Y 0.17 deleterious(0) probably_damaging(0.996) TCGA-49-4514-01 4 173734719 173734719 C A GALNTL6 Silent p.I256I 0.12 TCGA-49-4514-01 4 175898086 175898086 T A ADAM29 Silent p.G470G 0.16 TCGA-49-4514-01 4 186231881 186231881 G C SNX25 Missense_Mutation p.E255Q 0.15 deleterious(0) probably_damaging(0.946) TCGA-49-4514-01 4 20600010 20600010 C T SLIT2 Silent p.A1228A 0.14 TCGA-49-4514-01 4 22748973 22748973 C A GBA3 Missense_Mutation p.P114H 0.12 deleterious(0) probably_damaging(0.996) TCGA-49-4514-01 4 22748974 22748974 C T GBA3 Silent p.P114P 0.12 TCGA-49-4514-01 4 38945163 38945163 G A FAM114A1 Silent p.L559L 0.14 TCGA-49-4514-01 4 39291474 39291474 C G RFC1 Missense_Mutation p.M1119I 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-49-4514-01 4 41687770 41687770 A T LIMCH1 Silent p.S953S 0.10 TCGA-49-4514-01 4 72897519 72897519 G T NPFFR2 5'Flank 0.21 TCGA-49-4514-01 4 75174213 75174213 A G EPGN 5'UTR 0.08 TCGA-49-4514-01 4 85738544 85738544 C A WDFY3 Splice_Site p.X629_splice 0.12 TCGA-49-4514-01 4 89574133 89574133 G T HERC3 Missense_Mutation p.A193S 0.17 tolerated(0.07) possibly_damaging(0.755) TCGA-49-4514-01 4 90857868 90857868 G T MMRN1 Missense_Mutation p.A1013S 0.15 tolerated(0.13) benign(0.005) TCGA-49-4514-01 4 94750361 94750361 C A ATOH1 Missense_Mutation p.P95H 0.18 tolerated_low_confidence(0.14) benign(0.001) TCGA-49-4514-01 5 101834533 101834533 C A SLCO6A1 Missense_Mutation p.A6S 0.20 tolerated_low_confidence(0.29) benign(0.098) TCGA-49-4514-01 5 102326009 102326009 G C PAM Missense_Mutation p.G506A 0.20 tolerated(0.24) probably_damaging(0.997) TCGA-49-4514-01 5 11159692 11159692 G A CTNND2 Silent p.L719L 0.20 TCGA-49-4514-01 5 1225638 1225638 G T SLC6A18 Missense_Mutation p.D16Y 0.12 deleterious(0) possibly_damaging(0.482) TCGA-49-4514-01 5 130815330 130815330 C G RAPGEF6 Missense_Mutation p.E653Q 0.19 tolerated(0.11) possibly_damaging(0.752) TCGA-49-4514-01 5 130883763 130883763 C T RAPGEF6 Missense_Mutation p.V158M 0.14 deleterious(0.04) benign(0.372) TCGA-49-4514-01 5 140552718 140552718 C A PCDHB7 Missense_Mutation p.P101H 0.21 deleterious_low_confidence(0) benign(0.428) TCGA-49-4514-01 5 140553224 140553224 G A PCDHB7 Missense_Mutation p.D270N 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-49-4514-01 5 140750984 140750984 T C PCDHGB3 Silent p.N341N 0.18 TCGA-49-4514-01 5 149758590 149758590 G C TCOF1 Missense_Mutation p.Q821H 0.11 tolerated(0.28) probably_damaging(0.96) TCGA-49-4514-01 5 156590341 156590341 G C FAM71B Missense_Mutation p.A312G 0.18 deleterious(0.01) possibly_damaging(0.688) TCGA-49-4514-01 5 156592974 156592974 A T FAM71B Missense_Mutation p.M69K 0.20 deleterious(0) probably_damaging(0.96) TCGA-49-4514-01 5 167689648 167689648 G C TENM2 Missense_Mutation p.E2720Q 0.28 tolerated(0.12) probably_damaging(0.938) TCGA-49-4514-01 5 177419797 177419797 C T PROP1 Silent p.L198L 0.14 TCGA-49-4514-01 5 19473721 19473721 C A CDH18 Missense_Mutation p.G663C 0.27 deleterious(0) probably_damaging(1) TCGA-49-4514-01 5 24491768 24491768 C A CDH10 Missense_Mutation p.C598F 0.27 deleterious(0) probably_damaging(0.962) TCGA-49-4514-01 5 31410943 31410943 C A DROSHA Nonsense_Mutation p.E1193* 0.13 TCGA-49-4514-01 5 32789898 32789898 C T NPR3 3'UTR 0.12 TCGA-49-4514-01 5 35670195 35670195 G A SPEF2 Missense_Mutation p.E464K 0.10 deleterious(0) probably_damaging(0.989) TCGA-49-4514-01 5 36257147 36257147 G - RANBP3L Frame_Shift_Del p.L292* 0.33 TCGA-49-4514-01 5 52183654 52183654 G T ITGA1 Missense_Mutation p.A261S 0.28 deleterious(0.01) probably_damaging(0.98) TCGA-49-4514-01 5 55396111 55396111 G A ANKRD55 Missense_Mutation p.R582W 0.15 deleterious_low_confidence(0.01) benign(0.013) TCGA-49-4514-01 5 63256551 63256551 C G HTR1A Missense_Mutation p.K332N 0.19 deleterious(0.01) probably_damaging(0.948) TCGA-49-4514-01 5 6743935 6743935 G A PAPD7 Missense_Mutation p.M159I 0.23 deleterious(0.01) possibly_damaging(0.65) TCGA-49-4514-01 5 71493960 71493960 C T MAP1B Missense_Mutation p.S1593F 0.17 probably_damaging(0.998) TCGA-49-4514-01 5 80631635 80631635 C T ACOT12 Missense_Mutation p.R405H 0.11 tolerated(0.56) benign(0.002) TCGA-49-4514-01 6 129899655 129899655 C A ARHGAP18 3'UTR 0.21 TCGA-49-4514-01 6 130378627 130378627 G A L3MBTL3 Silent p.A248A 0.26 TCGA-49-4514-01 6 136599636 136599636 C T BCLAF1 Missense_Mutation p.R128K 0.08 tolerated_low_confidence(0.17) unknown(0) TCGA-49-4514-01 6 146480566 146480566 C A GRM1 Silent p.I261I 0.20 TCGA-49-4514-01 6 16327410 16327410 C T ATXN1 Missense_Mutation p.V378I 0.17 tolerated(0.12) benign(0.004) TCGA-49-4514-01 6 165827131 165827131 C G PDE10A Missense_Mutation p.C379S 0.17 deleterious(0) probably_damaging(1) TCGA-49-4514-01 6 169648870 169648870 A C THBS2 Missense_Mutation p.F84C 0.19 deleterious(0) probably_damaging(0.997) TCGA-49-4514-01 6 25862233 25862233 G C SLC17A3 Missense_Mutation p.Q110E 0.27 tolerated(1) benign(0.002) TCGA-49-4514-01 6 26043664 26043664 G A HIST1H2BB Silent p.I74I 0.08 TCGA-49-4514-01 6 27776224 27776224 C A HIST1H2AI Silent p.I79I 0.13 TCGA-49-4514-01 6 27925441 27925441 C A OR2B6 Nonsense_Mutation p.C141* 0.14 TCGA-49-4514-01 6 31125269 31125269 C T CCHCR1 Missense_Mutation p.E37K 0.27 deleterious_low_confidence(0.03) benign(0.219) TCGA-49-4514-01 6 3127546 3127546 G T BPHL Missense_Mutation p.W94C 0.14 deleterious(0) benign(0.369) TCGA-49-4514-01 6 3154049 3154049 G A TUBB2A 3'UTR 0.21 TCGA-49-4514-01 6 31805197 31805197 C T C6orf48 Missense_Mutation p.S31F 0.11 possibly_damaging(0.683) TCGA-49-4514-01 6 32086644 32086644 C T ATF6B Splice_Site p.X385_splice 0.11 TCGA-49-4514-01 6 32808690 32808690 G A PSMB8 3'UTR 0.15 TCGA-49-4514-01 6 33289672 33289672 C T DAXX Missense_Mutation p.D11N 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-49-4514-01 6 44336165 44336165 A G SPATS1 Silent p.P208P 0.21 TCGA-49-4514-01 6 47681809 47681809 C A GPR115 Silent p.P276P 0.18 TCGA-49-4514-01 6 55196612 55196613 CT A GFRAL Frame_Shift_Del p.A41Dfs*4 0.11 TCGA-49-4514-01 6 56857323 56857323 C T BEND6 Nonsense_Mutation p.R90* 0.14 TCGA-49-4514-01 6 7395331 7395331 C G RIOK1 Missense_Mutation p.P108A 0.18 deleterious(0) probably_damaging(0.94) TCGA-49-4514-01 6 74175962 74175962 G T MTO1 Missense_Mutation p.G83V 0.12 deleterious(0.02) probably_damaging(1) TCGA-49-4514-01 7 100028300 100028300 C T MEPCE Missense_Mutation p.P220L 0.18 deleterious(0.02) possibly_damaging(0.776) TCGA-49-4514-01 7 103202032 103202032 C A RELN Missense_Mutation p.G1826W 0.12 deleterious(0) probably_damaging(1) TCGA-49-4514-01 7 103207077 103207078 - T RELN Frame_Shift_Ins p.T1573Nfs*21 0.20 TCGA-49-4514-01 7 111555894 111555894 C G DOCK4 Missense_Mutation p.V378L 0.12 tolerated(1) benign(0.001) TCGA-49-4514-01 7 11630169 11630169 C A THSD7A Silent p.G457G 0.17 TCGA-49-4514-01 7 127729612 127729612 G T SND1 Silent p.V830V 0.23 TCGA-49-4514-01 7 129825206 129825206 C G TMEM209 Silent p.G259G 0.20 TCGA-49-4514-01 7 143826661 143826661 C T OR2A14 Silent p.F152F 0.11 TCGA-49-4514-01 7 146997306 146997306 C G CNTNAP2 Missense_Mutation p.I474M 0.19 deleterious(0) probably_damaging(0.928) TCGA-49-4514-01 7 148702338 148702338 C A PDIA4 Missense_Mutation p.D473Y 0.15 deleterious(0) probably_damaging(0.917) TCGA-49-4514-01 7 2409266 2409266 G A EIF3B Silent p.K521K 0.11 TCGA-49-4514-01 7 2515570 2515570 C G GRIFIN RNA 0.19 TCGA-49-4514-01 7 31008552 31008552 G T GHRHR Splice_Site p.X54_splice 0.18 TCGA-49-4514-01 7 35293192 35293192 G A TBX20 Missense_Mutation p.R14W 0.19 deleterious(0) probably_damaging(0.972) TCGA-49-4514-01 7 51096436 51096436 C A COBL Missense_Mutation p.S786I 0.12 tolerated(0.37) benign(0.009) TCGA-49-4514-01 7 65552720 65552720 C G ASL Silent p.L220L 0.09 TCGA-49-4514-01 7 70880974 70880974 G T WBSCR17 Missense_Mutation p.R230L 0.10 deleterious(0) benign(0.283) TCGA-49-4514-01 7 73935550 73935550 C G GTF2IRD1 Missense_Mutation p.T342S 0.16 tolerated(0.96) benign(0.003) TCGA-49-4514-01 7 74193606 74193606 C A NCF1 Missense_Mutation p.P78H 0.14 deleterious(0.05) benign(0.319) TCGA-49-4514-01 7 79846625 79846626 AC - GNAI1 Frame_Shift_Del p.T295Ifs*2 0.17 TCGA-49-4514-01 7 98609988 98609988 C G TRRAP 3'UTR 0.33 TCGA-49-4514-01 8 101154184 101154184 C G FBXO43 Missense_Mutation p.G100R 0.15 tolerated(0.23) possibly_damaging(0.58) TCGA-49-4514-01 8 10468217 10468217 C T RP1L1 Missense_Mutation p.D1131N 0.16 possibly_damaging(0.892) TCGA-49-4514-01 8 108913185 108913185 G T RSPO2 3'UTR 0.26 TCGA-49-4514-01 8 113349928 113349928 G C CSMD3 Missense_Mutation p.P2229A 0.15 deleterious(0.01) benign(0.326) TCGA-49-4514-01 8 113702264 113702264 C A CSMD3 Missense_Mutation p.S663I 0.17 deleterious(0) probably_damaging(0.998) TCGA-49-4514-01 8 113702266 113702266 T A CSMD3 Missense_Mutation p.E662D 0.16 tolerated(0.15) benign(0.126) TCGA-49-4514-01 8 125107185 125107185 C A FER1L6 Missense_Mutation p.S1534Y 0.35 tolerated(0.2) possibly_damaging(0.839) TCGA-49-4514-01 8 145049532 145049532 C A PARP10 3'Flank 0.13 TCGA-49-4514-01 8 15398024 15398024 C T TUSC3 Missense_Mutation p.L29F 0.15 tolerated(0.13) benign(0.013) TCGA-49-4514-01 8 21833878 21833878 G A XPO7 Silent p.K203K 0.15 TCGA-49-4514-01 8 39068732 39068732 G T ADAM32 Silent p.V374V 0.12 TCGA-49-4514-01 8 77767112 77767112 G A ZFHX4 Nonsense_Mutation p.W2652* 0.17 TCGA-49-4514-01 8 77767611 77767611 G - ZFHX4 Frame_Shift_Del p.G2819Efs*15 0.18 TCGA-49-4514-01 9 103109394 103109394 C A TEX10 Missense_Mutation p.D159Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-49-4514-01 9 111670594 111670594 T A IKBKAP Missense_Mutation p.K484M 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-49-4514-01 9 112168882 112168882 G C PTPN3 Missense_Mutation p.P551R 0.17 deleterious(0) probably_damaging(1) TCGA-49-4514-01 9 117241034 117241034 C T DFNB31 Silent p.K212K 0.39 TCGA-49-4514-01 9 122000939 122000939 G T BRINP1 Missense_Mutation p.L227I 0.12 deleterious(0) possibly_damaging(0.899) TCGA-49-4514-01 9 130207042 130207042 C T ZNF79 Missense_Mutation p.H355Y 0.17 deleterious(0) probably_damaging(0.998) TCGA-49-4514-01 9 135042216 135042216 G C NTNG2 5'UTR 0.23 TCGA-49-4514-01 9 135470216 135470216 G A DDX31 3'UTR 0.19 TCGA-49-4514-01 9 139228961 139228961 C T GPSM1 Silent p.G42G 0.25 TCGA-49-4514-01 9 140128971 140128971 C T SLC34A3 Silent p.V399V 0.35 TCGA-49-4514-01 9 21166475 21166475 C A IFNA21 Missense_Mutation p.R46I 0.17 deleterious(0) probably_damaging(0.972) TCGA-49-4514-01 9 43816684 43816684 G T CNTNAP3B Missense_Mutation p.G264C 0.12 deleterious(0) probably_damaging(1) TCGA-49-4514-01 9 5126726 5126726 C T JAK2 Nonsense_Mutation p.Q1112* 0.16 TCGA-49-4514-01 9 5805687 5805687 C T ERMP1 Silent p.S549S 0.10 TCGA-49-4514-01 9 93629456 93629456 C G SYK Missense_Mutation p.S297C 0.13 tolerated(0.23) benign(0.285) TCGA-49-4514-01 9 96427980 96427980 C G PHF2 Silent p.L650L 0.15 TCGA-49-4514-01 X 105152952 105152952 A C NRK Missense_Mutation p.Q441P 0.15 tolerated(0.13) benign(0.004) TCGA-49-4514-01 X 106171458 106171458 C T CLDN2 5'UTR 0.12 TCGA-49-4514-01 X 132437228 132437228 T A GPC4 Silent p.A478A 0.20 TCGA-49-4514-01 X 138728982 138728982 C A MCF2 Missense_Mutation p.A36S 0.21 tolerated(0.75) benign(0.04) TCGA-49-4514-01 X 150780226 150780226 G T PASD1 Splice_Site p.X69_splice 0.16 TCGA-49-4514-01 X 151870189 151870189 C T MAGEA6 Silent p.I293I 0.22 TCGA-49-4514-01 X 152613093 152613093 G A ZNF275 Missense_Mutation p.G317D 0.25 deleterious(0) probably_damaging(0.999) TCGA-49-4514-01 X 15262539 15262539 C A ASB9 3'UTR 0.14 TCGA-49-4514-01 X 154018236 154018236 G A MPP1 Missense_Mutation p.A158V 0.21 tolerated(0.09) benign(0.002) TCGA-49-4514-01 X 16778405 16778405 G T SYAP1 Nonsense_Mutation p.E328* 0.13 TCGA-49-4514-01 X 1712956 1712956 G A AKAP17A Missense_Mutation p.G201S 0.14 tolerated(0.16) possibly_damaging(0.637) TCGA-49-4514-01 X 21609204 21609204 G T CNKSR2 Missense_Mutation p.E574D 0.18 deleterious(0.01) probably_damaging(0.969) TCGA-49-4514-01 X 30746966 30746966 T A GK 3'UTR 0.21 TCGA-49-4514-01 X 31089831 31089831 G C FTHL17 Missense_Mutation p.H80Q 0.16 deleterious(0.04) benign(0.039) TCGA-49-4514-01 X 37639333 37639333 G T CYBB Translation_Start_Site p.M1? 0.12 deleterious(0.01) possibly_damaging(0.77) TCGA-49-4514-01 X 37985950 37985950 G T SYTL5 Missense_Mutation p.M742I 0.18 deleterious(0.04) possibly_damaging(0.642) TCGA-49-4514-01 X 38016192 38016192 G A SRPX Missense_Mutation p.T349I 0.21 deleterious(0.03) possibly_damaging(0.828) TCGA-49-4514-01 X 48372655 48372655 C A PORCN Silent p.V249V 0.14 TCGA-49-4514-01 X 48372656 48372656 T A PORCN Missense_Mutation p.S250T 0.13 deleterious(0.02) probably_damaging(0.986) TCGA-49-4514-01 X 48558965 48558965 C A SUV39H1 Missense_Mutation p.L217M 0.14 tolerated(0.2) possibly_damaging(0.617) TCGA-49-4514-01 X 48896717 48896717 G A TFE3 Missense_Mutation p.P150L 0.13 deleterious(0.04) unknown(0) TCGA-49-4514-01 X 49079432 49079432 T A CACNA1F Missense_Mutation p.S692C 0.27 deleterious(0) probably_damaging(0.996) TCGA-49-4514-01 X 68382067 68382067 G A PJA1 Missense_Mutation p.P339S 0.10 tolerated(0.4) benign(0.006) TCGA-49-4514-01 X 69516870 69516870 C A KIF4A Silent p.A86A 0.14 TCGA-49-4514-01 X 69898725 69898725 T A TEX11 Nonsense_Mutation p.R406* 0.10 TCGA-49-4514-01 X 79286509 79286509 G T TBX22 Missense_Mutation p.G488C 0.20 deleterious(0.01) benign(0.336) TCGA-49-4514-01 X 79937526 79937526 C A BRWD3 Missense_Mutation p.A1489S 0.19 tolerated(0.51) benign(0.016) TCGA-49-4514-01 X 8764317 8764317 T C FAM9A Silent p.Q160Q 0.12 TCGA-49-4514-01 X 91131800 91131800 C T PCDH11X Silent p.L187L 0.14 TCGA-49-4514-01 X 96139496 96139496 G A RPA4 Missense_Mutation p.V63M 0.17 deleterious(0.02) possibly_damaging(0.802) TCGA-49-4514-01 X 9862757 9862757 C A SHROOM2 Missense_Mutation p.P270H 0.17 deleterious(0) benign(0.37) TCGA-49-4514-01 X 99921880 99921880 G A SRPX2 Missense_Mutation p.R304Q 0.22 deleterious(0) possibly_damaging(0.904) TCGA-49-6742-01 10 116045881 116045881 C T VWA2 Missense_Mutation p.A394V 0.08 tolerated(1) benign(0.008) TCGA-49-6742-01 10 135038376 135038376 G A KNDC1 Missense_Mutation p.M1744I 0.13 deleterious(0.05) benign(0.235) TCGA-49-6742-01 10 14987175 14987175 G C DCLRE1C Missense_Mutation p.L59V 0.46 deleterious(0) probably_damaging(0.993) TCGA-49-6742-01 10 16994356 16994356 C T CUBN Missense_Mutation p.D1630N 0.15 tolerated(0.05) probably_damaging(0.948) TCGA-49-6742-01 10 17164803 17164803 C - CUBN Frame_Shift_Del p.G195Efs*39 0.23 TCGA-49-6742-01 10 24762928 24762928 C G KIAA1217 Missense_Mutation p.L540V 0.07 tolerated(0.59) probably_damaging(0.997) TCGA-49-6742-01 10 3822298 3822298 C A KLF6 Missense_Mutation p.R267M 0.28 deleterious(0) probably_damaging(0.99) TCGA-49-6742-01 10 38260677 38260677 A G ZNF25 5'UTR 0.20 TCGA-49-6742-01 10 75391780 75391780 G C MYOZ1 Missense_Mutation p.R270G 0.38 deleterious(0) probably_damaging(0.913) TCGA-49-6742-01 10 81373913 81373913 C T SFTPA1 3'UTR 0.10 TCGA-49-6742-01 10 875438 875438 C T LARP4B Missense_Mutation p.A338T 0.08 tolerated(0.62) benign(0) TCGA-49-6742-01 11 103908057 103908057 A C DDI1 Missense_Mutation p.E169D 0.08 tolerated(0.66) benign(0.011) TCGA-49-6742-01 11 106558341 106558341 A C GUCY1A2 Silent p.S742S 0.06 TCGA-49-6742-01 11 113675628 113675628 C A USP28 Silent p.L847L 0.30 TCGA-49-6742-01 11 19970312 19970312 G T NAV2 Missense_Mutation p.R800S 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-49-6742-01 11 22646211 22646211 C T FANCF 3'UTR 0.07 TCGA-49-6742-01 11 2929522 2929522 C T SLC22A18 Silent p.F68F 0.15 TCGA-49-6742-01 11 35453913 35453913 A G PAMR1 Silent p.N735N 0.09 TCGA-49-6742-01 11 36103258 36103258 T C LDLRAD3 Silent p.H83H 0.06 TCGA-49-6742-01 11 4825130 4825130 G T OR52R1 Missense_Mutation p.P161T 0.21 deleterious(0) probably_damaging(1) TCGA-49-6742-01 11 49597836 49597836 A G RP11-707M1.1 RNA 0.15 TCGA-49-6742-01 11 4967632 4967632 C A OR51A4 Missense_Mutation p.K233N 0.39 tolerated(0.2) benign(0.014) TCGA-49-6742-01 11 55594902 55594902 G A OR5L2 Missense_Mutation p.D70N 0.32 deleterious(0) probably_damaging(0.998) TCGA-49-6742-01 11 55703807 55703807 C T OR5I1 Missense_Mutation p.E24K 0.14 tolerated(0.06) benign(0.073) TCGA-49-6742-01 11 55904846 55904846 C A OR8J3 Missense_Mutation p.V117L 0.28 deleterious(0.01) benign(0.007) TCGA-49-6742-01 11 56043714 56043714 T A OR5T1 Silent p.S200S 0.07 TCGA-49-6742-01 11 59620404 59620404 C T TCN1 3'UTR 0.11 TCGA-49-6742-01 11 60714087 60714087 G C SLC15A3 Silent p.P255P 0.28 TCGA-49-6742-01 11 65273372 65273372 G C MALAT1 RNA 0.07 TCGA-49-6742-01 11 65273513 65273513 G A MALAT1 RNA 0.33 TCGA-49-6742-01 11 66391877 66391877 G A RBM14 Missense_Mutation p.G177E 0.39 tolerated_low_confidence(0.12) benign(0.002) TCGA-49-6742-01 11 6913260 6913260 C A OR2D2 Missense_Mutation p.V158L 0.25 tolerated(0.27) benign(0.327) TCGA-49-6742-01 11 69458698 69458698 G T CCND1 Silent p.A171A 0.41 TCGA-49-6742-01 11 69458699 69458699 G A CCND1 Missense_Mutation p.E172K 0.40 tolerated(0.94) benign(0.001) TCGA-49-6742-01 11 71701662 71701662 A G RNF121 Missense_Mutation p.M176V 0.31 tolerated(0.06) benign(0.354) TCGA-49-6742-01 11 71727042 71727042 G A NUMA1 Silent p.L503L 0.12 TCGA-49-6742-01 11 73075516 73075516 G C ARHGEF17 Missense_Mutation p.Q1807H 0.21 deleterious(0.04) benign(0.006) TCGA-49-6742-01 11 77388035 77388035 C T RSF1 Missense_Mutation p.R1048Q 0.05 deleterious(0.03) probably_damaging(0.984) TCGA-49-6742-01 11 8704205 8704205 G C RPL27A 5'UTR 0.40 TCGA-49-6742-01 12 100551822 100551822 G A AC010203.1 5'Flank 0.20 TCGA-49-6742-01 12 110618328 110618328 G A IFT81 Silent p.R430R 0.17 TCGA-49-6742-01 12 113830941 113830941 G T SDS Silent p.I264I 0.35 TCGA-49-6742-01 12 114397877 114397877 G A RBM19 Missense_Mutation p.P109L 0.24 tolerated(0.12) benign(0.015) TCGA-49-6742-01 12 117513112 117513112 C A TESC Missense_Mutation p.R31I 0.31 deleterious(0) probably_damaging(1) TCGA-49-6742-01 12 119909847 119909847 G C CCDC60 Silent p.L73L 0.32 TCGA-49-6742-01 12 133353279 133353279 G A GOLGA3 Silent p.L1307L 0.37 TCGA-49-6742-01 12 27128447 27128447 C T TM7SF3 Missense_Mutation p.V478M 0.24 deleterious(0.02) possibly_damaging(0.544) TCGA-49-6742-01 12 29617518 29617518 C A OVCH1 Missense_Mutation p.V683L 0.31 deleterious(0.01) possibly_damaging(0.672) TCGA-49-6742-01 12 49578828 49578828 C G TUBA1A Missense_Mutation p.E441Q 0.04 tolerated_low_confidence(0.16) unknown(0) TCGA-49-6742-01 12 49724414 49724414 G A TROAP Missense_Mutation p.E596K 0.09 tolerated_low_confidence(0.08) benign(0.225) TCGA-49-6742-01 12 56708678 56708678 C A CNPY2 Missense_Mutation p.G54V 0.34 deleterious(0) probably_damaging(0.988) TCGA-49-6742-01 12 76763494 76763494 T A OSBPL8 Missense_Mutation p.K721N 0.15 tolerated(0.07) probably_damaging(0.996) TCGA-49-6742-01 12 85411261 85411261 C T TSPAN19 Missense_Mutation p.E190K 0.30 deleterious(0.05) benign(0.416) TCGA-49-6742-01 12 89992965 89992965 C T ATP2B1 Missense_Mutation p.D1094N 0.22 deleterious(0.02) possibly_damaging(0.819) TCGA-49-6742-01 12 95927518 95927518 C T USP44 Missense_Mutation p.G172E 0.29 tolerated(0.15) possibly_damaging(0.493) TCGA-49-6742-01 13 101910917 101910917 C A NALCN Missense_Mutation p.M381I 0.07 tolerated(0.13) benign(0.006) TCGA-49-6742-01 13 114322111 114322111 G A GRK1 Missense_Mutation p.G137E 0.27 tolerated(0.77) benign(0.007) TCGA-49-6742-01 13 21265279 21265279 G C IFT88 Missense_Mutation p.D823H 0.30 deleterious(0) probably_damaging(0.953) TCGA-49-6742-01 13 26043143 26043143 G A ATP8A2 Silent p.K35K 0.10 TCGA-49-6742-01 13 26436463 26436463 A C ATP8A2 Missense_Mutation p.S1034R 0.11 deleterious(0) probably_damaging(1) TCGA-49-6742-01 13 31232310 31232310 A T USPL1 Missense_Mutation p.D699V 0.27 deleterious(0.01) possibly_damaging(0.668) TCGA-49-6742-01 13 36379850 36379850 G A DCLK1 Missense_Mutation p.H644Y 0.30 deleterious(0.04) benign(0.291) TCGA-49-6742-01 13 43788178 43788178 G A ENOX1 Missense_Mutation p.T627M 0.30 deleterious(0) possibly_damaging(0.893) TCGA-49-6742-01 13 49752734 49752734 G C FNDC3A Missense_Mutation p.E521Q 0.28 deleterious(0.01) benign(0.156) TCGA-49-6742-01 13 52701619 52701619 G A NEK5 5'UTR 0.14 TCGA-49-6742-01 14 104026973 104026973 C T BAG5 Missense_Mutation p.E218K 0.21 deleterious_low_confidence(0.04) benign(0.124) TCGA-49-6742-01 14 105814832 105814840 TGTGCAGCC - PACS2 In_Frame_Del p.C42_L44del 0.15 TCGA-49-6742-01 14 20978765 20978765 G T RNASE10 Missense_Mutation p.W45C 0.42 deleterious(0) probably_damaging(0.91) TCGA-49-6742-01 14 59105173 59105173 C T DACT1 Missense_Mutation p.R85C 0.46 deleterious(0.01) probably_damaging(0.97) TCGA-49-6742-01 14 65399021 65399021 T C CHURC1 3'UTR 0.28 TCGA-49-6742-01 14 70714518 70714518 G C ADAM21P1 RNA 0.10 TCGA-49-6742-01 14 72945014 72945014 G C RGS6 Missense_Mutation p.L277F 0.12 deleterious(0.02) possibly_damaging(0.707) TCGA-49-6742-01 14 74154042 74154042 G A DNAL1 Silent p.K115K 0.33 TCGA-49-6742-01 14 81610780 81610780 C A TSHR 3'UTR 0.45 TCGA-49-6742-01 15 101593183 101593183 G A LRRK1 Missense_Mutation p.G1249D 0.38 deleterious(0) probably_damaging(1) TCGA-49-6742-01 15 35044898 35044898 C G GJD2 Missense_Mutation p.E249D 0.28 deleterious(0) probably_damaging(0.999) TCGA-49-6742-01 15 42378515 42378515 C T PLA2G4D Missense_Mutation p.E95K 0.06 tolerated(0.15) benign(0.075) TCGA-49-6742-01 15 45270711 45270711 A G C15orf43 Missense_Mutation p.K183R 0.22 tolerated(0.27) possibly_damaging(0.799) TCGA-49-6742-01 15 48446077 48446077 G A MYEF2 Silent p.G333G 0.21 TCGA-49-6742-01 15 48446078 48446078 C A MYEF2 Missense_Mutation p.G333V 0.17 deleterious(0) benign(0.285) TCGA-49-6742-01 15 89862318 89862318 C G POLG Missense_Mutation p.K1039N 0.26 deleterious(0.04) possibly_damaging(0.827) TCGA-49-6742-01 15 94858848 94858848 G T MCTP2 Missense_Mutation p.V207F 0.31 deleterious(0) probably_damaging(0.979) TCGA-49-6742-01 16 10996625 10996625 G T CIITA Nonsense_Mutation p.G247* 0.34 TCGA-49-6742-01 16 1555456 1555456 G T TELO2 Missense_Mutation p.G630W 0.51 deleterious(0.03) benign(0.006) TCGA-49-6742-01 16 23847514 23847514 G T PRKCB Silent p.A6A 0.23 TCGA-49-6742-01 16 24582309 24582309 G T RBBP6 Nonsense_Mutation p.E1308* 0.12 TCGA-49-6742-01 16 48201504 48201504 A T ABCC11 Missense_Mutation p.I1320N 0.31 deleterious(0) probably_damaging(0.954) TCGA-49-6742-01 16 51174300 51174300 T G SALL1 Missense_Mutation p.E611D 0.09 tolerated(0.3) benign(0.135) TCGA-49-6742-01 16 57765098 57765098 G T CCDC135 Silent p.L851L 0.35 TCGA-49-6742-01 16 61859003 61859003 C A CDH8 Missense_Mutation p.G250C 0.42 deleterious(0.02) probably_damaging(1) TCGA-49-6742-01 16 67263491 67263491 C T FHOD1 3'UTR 0.38 TCGA-49-6742-01 16 67514999 67514999 G A ATP6V0D1 5'UTR 0.26 TCGA-49-6742-01 16 67515001 67515001 G A ATP6V0D1 5'UTR 0.25 TCGA-49-6742-01 16 68405584 68405584 G T SMPD3 Silent p.I167I 0.07 TCGA-49-6742-01 16 77465343 77465343 G A ADAMTS18 Missense_Mutation p.S115L 0.23 deleterious(0) possibly_damaging(0.631) TCGA-49-6742-01 16 81324006 81324006 C T BCMO1 Missense_Mutation p.L490F 0.34 deleterious(0) probably_damaging(0.99) TCGA-49-6742-01 16 87866630 87866630 G C SLC7A5 Missense_Mutation p.F490L 0.18 tolerated(0.73) benign(0.011) TCGA-49-6742-01 16 89703660 89703660 C T DPEP1 Missense_Mutation p.H214Y 0.16 tolerated(0.09) probably_damaging(1) TCGA-49-6742-01 17 1552103 1552103 G C RILP Missense_Mutation p.P222R 0.23 tolerated(0.05) benign(0.023) TCGA-49-6742-01 17 19216480 19216480 C - EPN2 Frame_Shift_Del p.A347Rfs*104 0.28 TCGA-49-6742-01 17 1936833 1936833 C T DPH1 Silent p.I37I 0.26 TCGA-49-6742-01 17 25976035 25976035 G T LGALS9 3'UTR 0.10 TCGA-49-6742-01 17 27008931 27008931 G A SUPT6H Silent p.Q510Q 0.13 TCGA-49-6742-01 17 38434499 38434499 T C WIPF2 3'UTR 0.23 TCGA-49-6742-01 17 42398804 42398804 C A SLC25A39 Missense_Mutation p.R172L 0.28 deleterious(0) probably_damaging(0.998) TCGA-49-6742-01 17 46629586 46629586 G A HOXB3 Missense_Mutation p.S84L 0.33 tolerated(0.06) benign(0) TCGA-49-6742-01 17 49245626 49245626 G A NME1-NME2 Silent p.Q165Q 0.05 TCGA-49-6742-01 17 51901606 51901606 G T KIF2B Silent p.V404V 0.30 TCGA-49-6742-01 17 61627972 61627972 C G DCAF7 5'UTR 0.35 TCGA-49-6742-01 17 73125037 73125037 C T ARMC7 Silent p.F167F 0.26 TCGA-49-6742-01 17 73125236 73125236 C T ARMC7 3'UTR 0.36 TCGA-49-6742-01 17 78321478 78321478 G A RNF213 Missense_Mutation p.A3115T 0.23 probably_damaging(1) TCGA-49-6742-01 17 8077424 8077424 G A TMEM107 3'UTR 0.43 TCGA-49-6742-01 17 9792772 9792772 T G GLP2R Missense_Mutation p.F471C 0.36 deleterious(0.03) possibly_damaging(0.827) TCGA-49-6742-01 18 10691237 10691237 G C PIEZO2 Silent p.L2332L 0.37 TCGA-49-6742-01 18 12695285 12695285 G C CEP76 Missense_Mutation p.Q258E 0.13 tolerated(1) benign(0.004) TCGA-49-6742-01 18 21526203 21526203 C T LAMA3 Silent p.I3102I 0.13 TCGA-49-6742-01 18 22806029 22806029 T G ZNF521 Missense_Mutation p.K618T 0.17 deleterious(0.04) probably_damaging(0.996) TCGA-49-6742-01 18 28660165 28660165 G T DSC2 Missense_Mutation p.P473T 0.16 deleterious(0) probably_damaging(1) TCGA-49-6742-01 18 31323324 31323324 A T ASXL3 Missense_Mutation p.K1171M 0.12 probably_damaging(0.998) TCGA-49-6742-01 18 40323480 40323480 T G RIT2 Missense_Mutation p.K211T 0.12 deleterious_low_confidence(0) benign(0.403) TCGA-49-6742-01 18 56648817 56648817 G T ZNF532 Nonsense_Mutation p.E1127* 0.42 TCGA-49-6742-01 18 64218487 64218487 T C CDH19 Missense_Mutation p.R207G 0.21 deleterious(0) probably_damaging(0.999) TCGA-49-6742-01 19 10287991 10287991 G A DNMT1 Silent p.T182T 0.13 TCGA-49-6742-01 19 10602775 10602775 A G KEAP1 Missense_Mutation p.L268P 0.20 deleterious(0) benign(0.219) TCGA-49-6742-01 19 11168983 11168983 G T SMARCA4 Nonsense_Mutation p.E1493* 0.45 TCGA-49-6742-01 19 22574557 22574557 C G ZNF98 Missense_Mutation p.E494Q 0.05 deleterious(0.02) benign(0.003) TCGA-49-6742-01 19 3434378 3434382 GCCCA - NFIC Frame_Shift_Del p.P272Hfs*36 0.60 TCGA-49-6742-01 19 43430044 43430044 G C PSG7 Nonsense_Mutation p.S375* 0.29 TCGA-49-6742-01 19 44223520 44223520 C T IRGC Silent p.T270T 0.13 TCGA-49-6742-01 19 44351997 44351997 G T ZNF283 Missense_Mutation p.G415V 0.30 tolerated(0.11) possibly_damaging(0.902) TCGA-49-6742-01 19 45567459 45567459 C T CLASRP Silent p.P365P 0.35 TCGA-49-6742-01 19 46319126 46319126 C G SYMPK Missense_Mutation p.E1224Q 0.19 deleterious_low_confidence(0.02) probably_damaging(0.983) TCGA-49-6742-01 19 46663876 46663876 G T IGFL2 Missense_Mutation p.A38S 0.48 tolerated(0.81) benign(0.146) TCGA-49-6742-01 19 46973432 46973432 C T PNMAL1 Silent p.P287P 0.52 TCGA-49-6742-01 19 46974056 46974056 C G PNMAL1 Silent p.L79L 0.26 TCGA-49-6742-01 19 47492798 47492798 C G ARHGAP35 Intron 0.49 TCGA-49-6742-01 19 48255844 48255844 C G GLTSCR2 Missense_Mutation p.P249A 0.19 deleterious(0) probably_damaging(0.995) TCGA-49-6742-01 19 55147118 55147118 G T LILRB1 Intron 0.39 TCGA-49-6742-01 19 5651059 5651059 G C SAFB Missense_Mutation p.K423N 0.23 deleterious(0) probably_damaging(0.994) TCGA-49-6742-01 1 100757055 100757055 C T RTCA Silent p.L379L 0.03 TCGA-49-6742-01 1 101186146 101186146 G A VCAM1 Missense_Mutation p.R60K 0.28 deleterious(0.01) probably_damaging(0.989) TCGA-49-6742-01 1 110172893 110172893 C T AMPD2 Silent p.I728I 0.34 TCGA-49-6742-01 1 115456644 115456644 C G SYCP1 Missense_Mutation p.Q566E 0.29 tolerated(1) benign(0.001) TCGA-49-6742-01 1 13718412 13718412 A G PRAMEF17 Missense_Mutation p.K292R 0.06 tolerated(0.15) benign(0.009) TCGA-49-6742-01 1 14108929 14108929 C T PRDM2 Missense_Mutation p.P1547S 0.06 unknown(0) TCGA-49-6742-01 1 145598609 145598609 C T POLR3C Missense_Mutation p.R295K 0.23 tolerated(0.14) benign(0.194) TCGA-49-6742-01 1 149901597 149901597 G A MTMR11 Missense_Mutation p.P620L 0.17 tolerated(0.27) benign(0.016) TCGA-49-6742-01 1 151040066 151040066 C G MLLT11 3'UTR 0.27 TCGA-49-6742-01 1 151314991 151314991 C T RFX5 Missense_Mutation p.E508K 0.25 deleterious_low_confidence(0.05) benign(0.013) TCGA-49-6742-01 1 158225933 158225933 G T CD1A Silent p.G155G 0.26 TCGA-49-6742-01 1 158450025 158450025 C T OR10R2 Nonsense_Mutation p.Q120* 0.24 TCGA-49-6742-01 1 158596652 158596652 G T SPTA1 Missense_Mutation p.A1937D 0.05 deleterious(0) probably_damaging(0.984) TCGA-49-6742-01 1 158815572 158815572 T C MNDA Silent p.L256L 0.09 TCGA-49-6742-01 1 159019381 159019381 T G IFI16 Intron 0.12 TCGA-49-6742-01 1 159277622 159277622 C G FCER1A Nonsense_Mutation p.S225* 0.27 TCGA-49-6742-01 1 167097297 167097297 A G DUSP27 Missense_Mutation p.S977G 0.21 tolerated(0.07) possibly_damaging(0.501) TCGA-49-6742-01 1 169697307 169697307 C G SELE Missense_Mutation p.G391R 0.18 tolerated(0.06) possibly_damaging(0.706) TCGA-49-6742-01 1 170695456 170695456 C T PRRX1 Silent p.D171D 0.15 TCGA-49-6742-01 1 170934337 170934337 A G MROH9 Missense_Mutation p.R141G 0.17 deleterious(0) probably_damaging(0.933) TCGA-49-6742-01 1 173472449 173472449 G A SLC9C2 Silent p.V1109V 0.19 TCGA-49-6742-01 1 174979302 174979302 A C CACYBP 3'UTR 0.15 TCGA-49-6742-01 1 176853571 176853571 C A ASTN1 Nonsense_Mutation p.E1044* 0.13 TCGA-49-6742-01 1 179660106 179660106 G C TDRD5 3'UTR 0.28 TCGA-49-6742-01 1 182787822 182787822 G A NPL Missense_Mutation p.E202K 0.19 deleterious(0) probably_damaging(0.996) TCGA-49-6742-01 1 183616705 183616705 C G APOBEC4 3'UTR 0.16 TCGA-49-6742-01 1 190424018 190424018 C G BRINP3 Translation_Start_Site p.M1? 0.22 deleterious_low_confidence(0) benign(0.107) TCGA-49-6742-01 1 207925405 207925405 C T CD46 5'UTR 0.11 TCGA-49-6742-01 1 212538537 212538537 C T TMEM206 3'UTR 0.12 TCGA-49-6742-01 1 214830338 214830338 C T CENPF Missense_Mutation p.L2850F 0.19 benign(0.09) TCGA-49-6742-01 1 216371906 216371906 G C USH2A Missense_Mutation p.L1278V 0.22 possibly_damaging(0.491) TCGA-49-6742-01 1 226125264 226125264 C A LEFTY2 Missense_Mutation p.M326I 0.23 tolerated(0.25) benign(0.152) TCGA-49-6742-01 1 237057846 237057846 C T MTR Missense_Mutation p.R1132W 0.09 deleterious(0) probably_damaging(1) TCGA-49-6742-01 1 237806644 237806644 G C RYR2 Missense_Mutation p.K2413N 0.22 probably_damaging(0.999) TCGA-49-6742-01 1 237947171 237947171 G C RYR2 Missense_Mutation p.E4053D 0.09 benign(0.147) TCGA-49-6742-01 1 24194554 24194554 C G FUCA1 Missense_Mutation p.E75Q 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-49-6742-01 1 243305732 243305732 C T CEP170 Silent p.E1315E 0.23 TCGA-49-6742-01 1 246922379 246922379 C G SCCPDH Missense_Mutation p.P247A 0.19 deleterious(0.01) possibly_damaging(0.612) TCGA-49-6742-01 1 247068858 247068858 T C AHCTF1 Missense_Mutation p.Q298R 0.29 tolerated(0.05) possibly_damaging(0.479) TCGA-49-6742-01 1 247921160 247921160 A G OR1C1 Silent p.P183P 0.29 TCGA-49-6742-01 1 248402282 248402282 T G OR2M4 Missense_Mutation p.F18V 0.08 deleterious(0.01) possibly_damaging(0.578) TCGA-49-6742-01 1 248616758 248616758 G A OR2T2 Silent p.T220T 0.60 TCGA-49-6742-01 1 248756476 248756476 G A OR2T10 Silent p.F198F 0.16 TCGA-49-6742-01 1 25573111 25573111 G C C1orf63 Missense_Mutation p.S115C 0.29 deleterious(0.01) unknown(0) TCGA-49-6742-01 1 28384528 28384528 C G EYA3 Missense_Mutation p.E4Q 0.10 tolerated_low_confidence(0.31) benign(0.195) TCGA-49-6742-01 1 29069903 29069903 C T YTHDF2 Missense_Mutation p.S374F 0.31 tolerated(0.14) benign(0.035) TCGA-49-6742-01 1 32167811 32167811 C T COL16A1 5'UTR 0.29 TCGA-49-6742-01 1 34003033 34003033 C T CSMD2 Intron 0.27 TCGA-49-6742-01 1 36023765 36023765 C T NCDN 5'UTR 0.13 TCGA-49-6742-01 1 40363105 40363105 C G MYCL Missense_Mutation p.R375T 0.37 deleterious(0.01) probably_damaging(0.962) TCGA-49-6742-01 1 45347297 45347297 C T EIF2B3 Silent p.E257E 0.27 TCGA-49-6742-01 1 54666248 54666248 G TT MRPL37 Frame_Shift_Ins p.C111Ffs*28 0.25 TCGA-49-6742-01 1 63113915 63113915 C G DOCK7 Missense_Mutation p.L198F 0.39 deleterious(0.01) benign(0.307) TCGA-49-6742-01 1 6488379 6488379 G A ESPN Missense_Mutation p.D130N 0.33 tolerated(0.19) benign(0.02) TCGA-49-6742-01 1 70611554 70611554 G T LRRC40 Missense_Mutation p.P580T 0.12 deleterious(0) probably_damaging(1) TCGA-49-6742-01 1 93306114 93306114 G T RPL5 Nonsense_Mutation p.E238* 0.25 TCGA-49-6742-01 1 94508894 94508894 G C ABCA4 Nonsense_Mutation p.S1063* 0.13 TCGA-49-6742-01 20 30028441 30028443 CTT - DEFB123 5'UTR 0.10 TCGA-49-6742-01 20 40040832 40040832 C G CHD6 Silent p.L2401L 0.21 TCGA-49-6742-01 20 57243142 57243142 G A STX16 Missense_Mutation p.E118K 0.07 deleterious(0.01) possibly_damaging(0.788) TCGA-49-6742-01 21 34030051 34030051 C A SYNJ1 Missense_Mutation p.R851S 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-49-6742-01 21 42748999 42748999 G T MX2 Missense_Mutation p.A56S 0.31 tolerated(0.64) benign(0.001) TCGA-49-6742-01 21 45978613 45978613 G C KRTAP10-3 5'UTR 0.30 TCGA-49-6742-01 21 46011473 46011473 C A KRTAP10-6 Missense_Mutation p.C298F 0.40 deleterious(0) unknown(0) TCGA-49-6742-01 21 47663461 47663461 C T MCM3AP Silent p.E1738E 0.06 TCGA-49-6742-01 22 21354220 21354220 C T THAP7 Silent p.L293L 0.10 TCGA-49-6742-01 22 21800810 21800810 C T HIC2 Silent p.F542F 0.30 TCGA-49-6742-01 22 21921998 21921998 G A UBE2L3 Intron 0.32 TCGA-49-6742-01 22 39996548 39996548 C T CACNA1I Silent p.I124I 0.12 TCGA-49-6742-01 22 50277565 50277565 G A ZBED4 Silent p.A85A 0.15 TCGA-49-6742-01 2 130877669 130877669 C T POTEF Silent p.L140L 0.23 TCGA-49-6742-01 2 141081555 141081555 G C LRP1B Missense_Mutation p.Q4141E 0.18 benign(0.042) TCGA-49-6742-01 2 160661621 160661621 G A LY75 Intron 0.28 TCGA-49-6742-01 2 160884750 160884750 G A PLA2R1 Missense_Mutation p.H360Y 0.07 tolerated(0.42) benign(0.006) TCGA-49-6742-01 2 165947525 165947525 C A SCN3A Missense_Mutation p.G1713V 0.31 deleterious(0.01) benign(0.008) TCGA-49-6742-01 2 168096470 168096470 G A XIRP2 Missense_Mutation p.E322K 0.10 benign(0.059) TCGA-49-6742-01 2 176794750 176794750 C A KIAA1715 Missense_Mutation p.G411V 0.35 tolerated_low_confidence(0.25) benign(0.004) TCGA-49-6742-01 2 177034065 177034065 C A HOXD3 Missense_Mutation p.P75T 0.29 tolerated(0.22) probably_damaging(0.981) TCGA-49-6742-01 2 178981066 178981066 G A RBM45 Missense_Mutation p.M126I 0.15 tolerated(0.41) benign(0.019) TCGA-49-6742-01 2 179579143 179579143 A C TTN Silent p.S8786S 0.09 TCGA-49-6742-01 2 183943759 183943759 A G DUSP19 Missense_Mutation p.E33G 0.34 deleterious(0) possibly_damaging(0.757) TCGA-49-6742-01 2 185802437 185802437 C T ZNF804A Missense_Mutation p.R772C 0.27 deleterious(0) probably_damaging(0.985) TCGA-49-6742-01 2 202899457 202899457 C T FZD7 Silent p.G29G 0.42 TCGA-49-6742-01 2 205969185 205969185 G C PARD3B Missense_Mutation p.L180F 0.23 tolerated(0.58) benign(0) TCGA-49-6742-01 2 206036935 206036935 G A PARD3B Missense_Mutation p.D479N 0.15 tolerated(0.12) probably_damaging(0.993) TCGA-49-6742-01 2 209355384 209355384 C T PTH2R Silent p.I412I 0.37 TCGA-49-6742-01 2 215646023 215646023 G A BARD1 Missense_Mutation p.S192F 0.26 deleterious(0) possibly_damaging(0.62) TCGA-49-6742-01 2 217234653 217234653 G A MARCH4 Missense_Mutation p.P111S 0.32 tolerated_low_confidence(0.44) probably_damaging(0.968) TCGA-49-6742-01 2 220115640 220115640 G A TUBA4A Missense_Mutation p.P261S 0.39 deleterious_low_confidence(0) benign(0.38) TCGA-49-6742-01 2 40655729 40655729 A G SLC8A1 Silent p.S564S 0.05 TCGA-49-6742-01 2 43519314 43519314 C G THADA Missense_Mutation p.Q1622H 0.23 tolerated(0.13) benign(0.004) TCGA-49-6742-01 2 70933523 70933523 G T ADD2 Silent p.V6V 0.26 TCGA-49-6742-01 2 96944390 96944390 C A SNRNP200 Missense_Mutation p.D1795Y 0.30 deleterious(0) probably_damaging(0.986) TCGA-49-6742-01 3 101060619 101060619 G A SENP7 Missense_Mutation p.S704L 0.08 deleterious(0.02) benign(0.018) TCGA-49-6742-01 3 121230866 121230866 G A POLQ Silent p.I493I 0.18 TCGA-49-6742-01 3 12393098 12393098 G A PPARG Missense_Mutation p.E3K 0.35 deleterious_low_confidence(0) benign(0.292) TCGA-49-6742-01 3 124393476 124393476 G A KALRN 3'UTR 0.21 TCGA-49-6742-01 3 183639187 183639187 C T ABCC5 Silent p.V1405V 0.20 TCGA-49-6742-01 3 184297342 184297342 G C EPHB3 Missense_Mutation p.E627Q 0.08 deleterious(0) possibly_damaging(0.83) TCGA-49-6742-01 3 27152782 27152782 T C NEK10 Missense_Mutation p.N1167S 0.08 tolerated_low_confidence(0.35) benign(0.002) TCGA-49-6742-01 3 27203854 27203854 A C NEK10 3'UTR 0.10 TCGA-49-6742-01 3 27204078 27204078 C T NEK10 Missense_Mutation p.D962N 0.10 deleterious(0.04) benign(0.002) TCGA-49-6742-01 3 38401862 38401862 G C XYLB Missense_Mutation p.G58A 0.28 tolerated(0.28) benign(0.089) TCGA-49-6742-01 3 3888070 3888070 A C LRRN1 Missense_Mutation p.N582T 0.11 deleterious(0) possibly_damaging(0.78) TCGA-49-6742-01 3 44701145 44701145 C T ZNF35 Silent p.L430L 0.19 TCGA-49-6742-01 3 48686568 48686568 C T CELSR3 Missense_Mutation p.E2185K 0.35 tolerated(0.08) benign(0.437) TCGA-49-6742-01 3 48696534 48696534 G C CELSR3 Missense_Mutation p.N1178K 0.05 deleterious(0) probably_damaging(0.999) TCGA-49-6742-01 3 48725789 48725789 C T IP6K2 Missense_Mutation p.E400K 0.41 tolerated(0.07) probably_damaging(0.995) TCGA-49-6742-01 3 58508312 58508312 C A ACOX2 Missense_Mutation p.V515L 0.19 deleterious(0.03) benign(0.232) TCGA-49-6742-01 3 59737985 59737985 T A FHIT Silent p.A137A 0.08 TCGA-49-6742-01 3 69987181 69987181 A C MITF Missense_Mutation p.N188T 0.21 tolerated(0.06) benign(0.373) TCGA-49-6742-01 4 101331503 101331503 G C EMCN Missense_Mutation p.S254C 0.10 tolerated(0.1) probably_damaging(0.993) TCGA-49-6742-01 4 103806449 103806449 C T CISD2 Silent p.L60L 0.19 TCGA-49-6742-01 4 114824400 114824400 C A ARSJ Missense_Mutation p.R277M 0.19 deleterious(0.02) benign(0.063) TCGA-49-6742-01 4 118975516 118975516 G A NDST3 Missense_Mutation p.D151N 0.14 deleterious(0) benign(0.371) TCGA-49-6742-01 4 120213799 120213799 C G USP53 Missense_Mutation p.I885M 0.18 tolerated_low_confidence(1) benign(0.003) TCGA-49-6742-01 4 160266332 160266332 G T RAPGEF2 Missense_Mutation p.R957L 0.47 deleterious(0.01) possibly_damaging(0.838) TCGA-49-6742-01 4 41984969 41984969 G A DCAF4L1 Missense_Mutation p.R387Q 0.15 tolerated(0.39) benign(0.014) TCGA-49-6742-01 4 437398 437398 A G ZNF721 Silent p.F286F 0.15 TCGA-49-6742-01 4 44449818 44449818 G A KCTD8 Silent p.I241I 0.20 TCGA-49-6742-01 4 52928477 52928477 A C SPATA18 Missense_Mutation p.Q134P 0.03 deleterious(0.01) probably_damaging(0.923) TCGA-49-6742-01 4 62599069 62599069 A T LPHN3 Missense_Mutation p.D331V 0.10 deleterious(0.05) probably_damaging(0.998) TCGA-49-6742-01 4 6296864 6296864 A T WFS1 Missense_Mutation p.D270V 0.15 tolerated(0.07) possibly_damaging(0.636) TCGA-49-6742-01 4 71347020 71347020 G C MUC7 Missense_Mutation p.E187Q 0.14 tolerated(0.26) unknown(0) TCGA-49-6742-01 4 74308075 74308075 C G AFP Missense_Mutation p.A182G 0.37 deleterious(0.04) probably_damaging(1) TCGA-49-6742-01 4 77660856 77660856 G A SHROOM3 Silent p.K510K 0.12 TCGA-49-6742-01 5 133502893 133502893 G C SKP1 Missense_Mutation p.L47V 0.36 tolerated(0.11) benign(0.257) TCGA-49-6742-01 5 140249821 140249821 C T PCDHA11 Missense_Mutation p.S378L 0.16 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-49-6742-01 5 140537598 140537598 C G PCDHB17 3'UTR 0.12 TCGA-49-6742-01 5 140719744 140719744 C A PCDHGA2 Nonsense_Mutation p.Y402* 0.37 TCGA-49-6742-01 5 149214257 149214257 C A PPARGC1B Missense_Mutation p.L576M 0.07 deleterious(0.02) benign(0.311) TCGA-49-6742-01 5 152870470 152870470 T C GRIA1 5'Flank 0.03 TCGA-49-6742-01 5 160047786 160047786 C T ATP10B Missense_Mutation p.E662K 0.30 tolerated(0.33) possibly_damaging(0.515) TCGA-49-6742-01 5 161580236 161580236 A C GABRG2 Missense_Mutation p.E470D 0.13 tolerated(0.22) possibly_damaging(0.84) TCGA-49-6742-01 5 167420063 167420063 G A TENM2 Silent p.R354R 0.18 TCGA-49-6742-01 5 169111353 169111353 A C DOCK2 Missense_Mutation p.S254R 0.06 deleterious(0.02) probably_damaging(0.925) TCGA-49-6742-01 5 169508967 169508967 C A DOCK2 Silent p.V1803V 0.22 TCGA-49-6742-01 5 31316422 31316422 G T CDH6 Missense_Mutation p.A500S 0.41 tolerated(0.16) benign(0.301) TCGA-49-6742-01 5 35010148 35010148 C T AGXT2 Missense_Mutation p.R432Q 0.17 deleterious(0) probably_damaging(1) TCGA-49-6742-01 5 35771819 35771819 G T SPEF2 Nonsense_Mutation p.E1304* 0.24 TCGA-49-6742-01 5 64747409 64747409 G A ADAMTS6 Silent p.L322L 0.35 TCGA-49-6742-01 5 74325767 74325767 T C GCNT4 Silent p.L32L 0.22 TCGA-49-6742-01 5 78981148 78981148 C T PAPD4 3'UTR 0.15 TCGA-49-6742-01 5 79378926 79378926 G A THBS4 Missense_Mutation p.E950K 0.22 tolerated(0.57) benign(0.171) TCGA-49-6742-01 5 92929473 92929473 C T NR2F1 Silent p.I399I 0.19 TCGA-49-6742-01 6 121402010 121402010 C T TBC1D32 Silent p.V1227V 0.41 TCGA-49-6742-01 6 127636021 127636021 G A ECHDC1 Missense_Mutation p.A152V 0.12 deleterious(0) probably_damaging(0.987) TCGA-49-6742-01 6 146264343 146264343 G T SHPRH Missense_Mutation p.S725Y 0.08 deleterious(0) probably_damaging(0.996) TCGA-49-6742-01 6 146720735 146720735 G A GRM1 Missense_Mutation p.D854N 0.15 tolerated(0.29) benign(0.067) TCGA-49-6742-01 6 30672360 30672360 C A MDC1 Missense_Mutation p.A1534S 0.18 tolerated(0.08) benign(0.182) TCGA-49-6742-01 6 31868936 31868936 G A ZBTB12 Silent p.V49V 0.13 TCGA-49-6742-01 6 34496627 34496627 G C PACSIN1 Missense_Mutation p.Q143H 0.58 deleterious(0) probably_damaging(0.913) TCGA-49-6742-01 6 35773660 35773660 C T LHFPL5 Silent p.N71N 0.17 TCGA-49-6742-01 6 38747797 38747797 C T DNAH8 Missense_Mutation p.R482C 0.08 benign(0.003) TCGA-49-6742-01 6 41036604 41036604 C T OARD1 Missense_Mutation p.G111E 0.12 tolerated(0.11) possibly_damaging(0.503) TCGA-49-6742-01 6 52370505 52370505 C A TRAM2 Missense_Mutation p.R256L 0.43 deleterious(0.02) probably_damaging(0.962) TCGA-49-6742-01 6 55264023 55264023 G C GFRAL Missense_Mutation p.R333T 0.16 tolerated(0.09) benign(0.023) TCGA-49-6742-01 6 71248050 71248050 C G FAM135A Missense_Mutation p.R1392G 0.13 deleterious(0) probably_damaging(1) TCGA-49-6742-01 6 90566859 90566859 C G CASP8AP2 RNA 0.25 TCGA-49-6742-01 7 11068332 11068332 C T PHF14 Missense_Mutation p.R448C 0.12 deleterious(0) probably_damaging(0.973) TCGA-49-6742-01 7 117431286 117431286 G A CTTNBP2 Missense_Mutation p.S655F 0.08 deleterious(0.04) possibly_damaging(0.886) TCGA-49-6742-01 7 127235473 127235473 G - FSCN3 Frame_Shift_Del p.R86Pfs*25 0.32 TCGA-49-6742-01 7 136848884 136848884 A C hsa-mir-490 Intron 0.07 TCGA-49-6742-01 7 137282598 137282598 C T DGKI Missense_Mutation p.G436R 0.21 deleterious(0) probably_damaging(1) TCGA-49-6742-01 7 142625816 142625816 G A TRPV5 Silent p.F244F 0.12 TCGA-49-6742-01 7 150817229 150817229 C T AGAP3 Silent p.F375F 0.27 TCGA-49-6742-01 7 23830456 23830456 C T STK31 Missense_Mutation p.S884L 0.10 tolerated(0.2) possibly_damaging(0.61) TCGA-49-6742-01 7 2946328 2946328 C T CARD11 Missense_Mutation p.D1137N 0.10 tolerated(0.33) benign(0.21) TCGA-49-6742-01 7 30963079 30963079 G A AQP1 Silent p.G215G 0.12 TCGA-49-6742-01 7 33427662 33427662 G A BBS9 Missense_Mutation p.R674Q 0.07 deleterious(0) probably_damaging(0.992) TCGA-49-6742-01 7 48033980 48033980 C G SUN3 Missense_Mutation p.E265Q 0.11 tolerated(0.13) probably_damaging(0.992) TCGA-49-6742-01 7 48035654 48035654 C T SUN3 Missense_Mutation p.E223K 0.13 deleterious(0.02) possibly_damaging(0.803) TCGA-49-6742-01 7 50455159 50455159 C G IKZF1 Intron 0.35 TCGA-49-6742-01 7 53103781 53103781 C G POM121L12 Missense_Mutation p.I139M 0.07 deleterious(0.02) probably_damaging(0.91) TCGA-49-6742-01 7 5540616 5540616 G A FBXL18 Silent p.S428S 0.25 TCGA-49-6742-01 7 76058924 76058924 G C ZP3 Missense_Mutation p.E135D 0.47 tolerated(0.48) benign(0.014) TCGA-49-6742-01 7 808794 808794 G A HEATR2 Intron 0.26 TCGA-49-6742-01 7 88966042 88966042 C G ZNF804B Missense_Mutation p.S1249W 0.06 deleterious(0) probably_damaging(0.993) TCGA-49-6742-01 7 92762501 92762501 G A SAMD9L Silent p.L928L 0.54 TCGA-49-6742-01 7 99022694 99022694 G A ATP5J2-PTCD1 Silent p.I536I 0.43 TCGA-49-6742-01 8 10387085 10387085 G C PRSS55 Missense_Mutation p.E75Q 0.26 tolerated(0.23) benign(0.044) TCGA-49-6742-01 8 113316974 113316974 T C CSMD3 Missense_Mutation p.R2748G 0.07 tolerated(1) possibly_damaging(0.777) TCGA-49-6742-01 8 116599829 116599829 C T TRPS1 Missense_Mutation p.R700K 0.27 deleterious_low_confidence(0) possibly_damaging(0.531) TCGA-49-6742-01 8 136554916 136554916 T G KHDRBS3 Missense_Mutation p.L76R 0.08 deleterious(0) probably_damaging(0.992) TCGA-49-6742-01 8 1497624 1497624 C T DLGAP2 Silent p.F255F 0.27 TCGA-49-6742-01 8 21768239 21768239 C T DOK2 Missense_Mutation p.G188E 0.33 deleterious(0.04) possibly_damaging(0.508) TCGA-49-6742-01 8 21768240 21768240 C A DOK2 Missense_Mutation p.G188W 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-49-6742-01 8 22368701 22368701 G A PPP3CC Missense_Mutation p.G196E 0.07 deleterious(0.01) probably_damaging(0.986) TCGA-49-6742-01 8 24324370 24324370 G T ADAM7 Nonsense_Mutation p.E150* 0.31 TCGA-49-6742-01 8 24771378 24771378 C T NEFM Silent p.F24F 0.16 TCGA-49-6742-01 8 27598009 27598009 C A CCDC25 Nonsense_Mutation p.E193* 0.30 TCGA-49-6742-01 8 30704643 30704643 C T TEX15 Missense_Mutation p.E631K 0.21 tolerated(0.1) benign(0.011) TCGA-49-6742-01 8 48805717 48805717 C G PRKDC Missense_Mutation p.G1276A 0.13 benign(0.002) TCGA-49-6742-01 8 52321922 52321922 C A PXDNL Missense_Mutation p.Q754H 0.33 deleterious(0.01) possibly_damaging(0.726) TCGA-49-6742-01 8 59512531 59512531 C T NSMAF Missense_Mutation p.E475K 0.11 deleterious(0) probably_damaging(0.999) TCGA-49-6742-01 8 88886265 88886265 T A DCAF4L2 5'UTR 0.47 TCGA-49-6742-01 8 92378836 92378836 C T SLC26A7 Missense_Mutation p.S506L 0.19 deleterious(0.04) possibly_damaging(0.869) TCGA-49-6742-01 9 105767260 105767260 A C CYLC2 Missense_Mutation p.K116T 0.09 tolerated(0.14) benign(0.366) TCGA-49-6742-01 9 118949434 118949434 G A PAPPA Silent p.G139G 0.14 TCGA-49-6742-01 9 120476246 120476246 G A TLR4 Missense_Mutation p.D614N 0.30 tolerated(0.55) benign(0) TCGA-49-6742-01 9 120476748 120476748 A G TLR4 Missense_Mutation p.Q781R 0.10 tolerated(0.18) benign(0.344) TCGA-49-6742-01 9 125551304 125551304 C T OR5C1 Silent p.L31L 0.30 TCGA-49-6742-01 9 130551617 130551617 A C CDK9 Missense_Mutation p.D305A 0.18 deleterious(0.01) probably_damaging(0.916) TCGA-49-6742-01 9 139265114 139265114 C T CARD9 Missense_Mutation p.D223N 0.10 deleterious(0.02) benign(0.082) TCGA-49-6742-01 9 17409351 17409351 G C CNTLN Missense_Mutation p.Q892H 0.45 deleterious(0.03) probably_damaging(0.938) TCGA-49-6742-01 9 33264328 33264328 C T BAG1 Silent p.E115E 0.63 TCGA-49-6742-01 9 84532861 84532861 C T SPATA31D5P RNA 0.32 TCGA-49-6742-01 9 98242859 98242859 G A PTCH1 Missense_Mutation p.P253L 0.14 tolerated(0.55) benign(0.007) TCGA-49-6742-01 9 98774545 98774545 C G ERCC6L2 Missense_Mutation p.S210C 0.14 tolerated(0.06) benign(0.063) TCGA-49-6742-01 X 107840675 107840675 T G COL4A5 Silent p.T552T 0.24 TCGA-49-6742-01 X 132351956 132351956 A T TFDP3 Missense_Mutation p.L111Q 0.66 deleterious(0) probably_damaging(0.973) TCGA-49-6742-01 X 133087112 133087112 T C GPC3 Missense_Mutation p.K101R 0.17 deleterious(0) benign(0.349) TCGA-49-6742-01 X 135758848 135758848 T C ARHGEF6 Missense_Mutation p.K627R 0.25 tolerated(0.24) benign(0.39) TCGA-49-6742-01 X 138857035 138857035 T G ATP11C Missense_Mutation p.K680T 0.14 deleterious(0) probably_damaging(1) TCGA-49-6742-01 X 150911915 150911915 G A CNGA2 Missense_Mutation p.D314N 0.15 tolerated(0.27) benign(0.056) TCGA-49-6742-01 X 30739036 30739036 C T GK Silent p.V469V 0.62 TCGA-49-6742-01 X 50053789 50053789 T G CCNB3 Missense_Mutation p.F874V 0.39 tolerated(0.06) benign(0.017) TCGA-49-6742-01 X 53223699 53223699 G C KDM5C Silent p.L1220L 0.50 TCGA-49-6742-01 X 54949381 54949381 C T TRO Missense_Mutation p.A139V 0.58 deleterious_low_confidence(0) unknown(0) TCGA-49-6742-01 X 5821683 5821683 C A NLGN4X Missense_Mutation p.G346C 0.66 deleterious(0) probably_damaging(1) TCGA-49-6742-01 X 66863122 66863122 T G AR Silent p.V547V 0.15 TCGA-49-6743-01 10 105939596 105939596 A T WDR96 Splice_Site p.X794_splice 0.11 TCGA-49-6743-01 10 106118130 106118130 C A CCDC147 Missense_Mutation p.S14Y 0.13 deleterious(0) possibly_damaging(0.694) TCGA-49-6743-01 10 111878420 111878420 C A ADD3 Missense_Mutation p.P215T 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-49-6743-01 10 115987680 115987680 A G TDRD1 Missense_Mutation p.R1139G 0.09 tolerated(0.07) probably_damaging(0.943) TCGA-49-6743-01 10 117026331 117026331 C A ATRNL1 Nonsense_Mutation p.Y610* 0.24 TCGA-49-6743-01 10 1175307 1175307 C T WDR37 3'UTR 0.16 TCGA-49-6743-01 10 117884855 117884855 C A GFRA1 Missense_Mutation p.C216F 0.11 deleterious(0) probably_damaging(0.978) TCGA-49-6743-01 10 119768422 119768422 T C RAB11FIP2 3'UTR 0.21 TCGA-49-6743-01 10 121652418 121652418 C T SEC23IP Nonsense_Mutation p.Q42* 0.27 TCGA-49-6743-01 10 122273465 122273465 A G PPAPDC1A Missense_Mutation p.K70E 0.11 tolerated(0.23) benign(0.313) TCGA-49-6743-01 10 124377606 124377606 C A DMBT1 Nonsense_Mutation p.Y1526* 0.21 TCGA-49-6743-01 10 127442261 127442261 A G EDRF1 Splice_Site p.X1132_splice 0.22 TCGA-49-6743-01 10 129903225 129903225 T C MKI67 Silent p.P2293P 0.11 TCGA-49-6743-01 10 15628602 15628602 C A ITGA8 Missense_Mutation p.A785S 0.12 deleterious(0.02) probably_damaging(1) TCGA-49-6743-01 10 16893306 16893306 A - CUBN Frame_Shift_Del p.H3198Tfs*23 0.09 TCGA-49-6743-01 10 18242214 18242214 C A SLC39A12 Missense_Mutation p.F3L 0.21 tolerated_low_confidence(0.17) benign(0.02) TCGA-49-6743-01 10 18242215 18242215 C A SLC39A12 Silent p.R4R 0.20 TCGA-49-6743-01 10 18828318 18828318 T C CACNB2 Missense_Mutation p.S550P 0.10 tolerated(0.07) benign(0.011) TCGA-49-6743-01 10 21415032 21415032 C G C10orf113 Missense_Mutation p.R63T 0.22 tolerated_low_confidence(0.77) benign(0.002) TCGA-49-6743-01 10 27702206 27702206 A T PTCHD3 Missense_Mutation p.L325Q 0.24 tolerated(0.25) benign(0.039) TCGA-49-6743-01 10 30915712 30915713 CA T LYZL2 Frame_Shift_Del p.G91Efs*44 0.09 TCGA-49-6743-01 10 31608219 31608219 A G ZEB1 Missense_Mutation p.N19S 0.18 tolerated(0.31) benign(0.041) TCGA-49-6743-01 10 31810747 31810747 G C ZEB1 Silent p.A829A 0.25 TCGA-49-6743-01 10 35495959 35495959 G T CREM Missense_Mutation p.E245D 0.17 deleterious(0) possibly_damaging(0.779) TCGA-49-6743-01 10 38241506 38241506 C A ZNF25 Missense_Mutation p.S307I 0.15 tolerated(1) benign(0.041) TCGA-49-6743-01 10 43297597 43297597 A G BMS1 Missense_Mutation p.I754V 0.14 deleterious(0.03) benign(0.101) TCGA-49-6743-01 10 44139648 44139648 C T ZNF32 Silent p.K224K 0.08 TCGA-49-6743-01 10 44866826 44866826 A C CXCL12 3'UTR 0.38 TCGA-49-6743-01 10 47747050 47747050 C A ANXA8L2 5'UTR 0.16 TCGA-49-6743-01 10 48387892 48387892 G T RBP3 Missense_Mutation p.P996T 0.12 tolerated(0.1) possibly_damaging(0.641) TCGA-49-6743-01 10 48429294 48429294 G C GDF10 Missense_Mutation p.R198G 0.16 deleterious(0) probably_damaging(0.995) TCGA-49-6743-01 10 50966631 50966631 T A OGDHL Missense_Mutation p.Q3L 0.17 tolerated_low_confidence(0.09) benign(0.029) TCGA-49-6743-01 10 51472576 51472576 T A AGAP7 Missense_Mutation p.H135L 0.09 tolerated_low_confidence(1) benign(0.002) TCGA-49-6743-01 10 60549635 60549635 C T BICC1 Missense_Mutation p.S330F 0.11 deleterious(0) possibly_damaging(0.833) TCGA-49-6743-01 10 64573365 64573365 C G EGR2 Missense_Mutation p.E345Q 0.09 deleterious(0) benign(0.393) TCGA-49-6743-01 10 70516155 70516155 C G CCAR1 Nonsense_Mutation p.S584* 0.16 TCGA-49-6743-01 10 75107969 75107969 A T TTC18 Missense_Mutation p.V125D 0.10 deleterious(0) benign(0.277) TCGA-49-6743-01 10 75671310 75671310 C T PLAU 5'UTR 0.11 TCGA-49-6743-01 10 79782083 79782083 A T POLR3A Silent p.V235V 0.17 TCGA-49-6743-01 10 81052058 81052058 C T ZMIZ1 Missense_Mutation p.A301V 0.18 probably_damaging(0.99) TCGA-49-6743-01 10 85961591 85961591 G A CDHR1 Missense_Mutation p.R185H 0.32 tolerated(0.1) benign(0.052) TCGA-49-6743-01 10 86018323 86018323 C A RGR Silent p.G272G 0.14 TCGA-49-6743-01 10 93604783 93604783 G T TNKS2 Missense_Mutation p.G723W 0.24 deleterious(0) probably_damaging(1) TCGA-49-6743-01 10 95335955 95335955 C T FFAR4 Silent p.I225I 0.10 TCGA-49-6743-01 10 95791158 95791158 C T PLCE1 Nonsense_Mutation p.Q119* 0.16 TCGA-49-6743-01 10 96609762 96609762 T C CYP2C19 Missense_Mutation p.L413P 0.11 deleterious(0) probably_damaging(1) TCGA-49-6743-01 10 99116936 99116936 T C RRP12 Missense_Mutation p.Q1270R 0.18 tolerated(0.15) benign(0.005) TCGA-49-6743-01 11 100095501 100095501 C A CNTN5 Silent p.T654T 0.30 TCGA-49-6743-01 11 105009808 105009808 G T CARD18 Intron 0.15 TCGA-49-6743-01 11 107299756 107299756 A G CWF19L2 Missense_Mutation p.L401S 0.21 tolerated(0.21) benign(0.005) TCGA-49-6743-01 11 108549087 108549087 G T DDX10 Missense_Mutation p.V195L 0.23 deleterious(0) possibly_damaging(0.513) TCGA-49-6743-01 11 110035917 110035917 C T ZC3H12C Missense_Mutation p.L703F 0.27 tolerated(0.43) benign(0.197) TCGA-49-6743-01 11 114569307 114569307 T A NXPE2 Missense_Mutation p.S225T 0.09 tolerated(0.21) benign(0.119) TCGA-49-6743-01 11 116633961 116633961 G C BUD13 Nonsense_Mutation p.S115* 0.13 TCGA-49-6743-01 11 117242006 117242006 A T CEP164 Missense_Mutation p.N326Y 0.20 deleterious(0.01) benign(0.333) TCGA-49-6743-01 11 119217211 119217211 A G MFRP Missense_Mutation p.S5P 0.31 deleterious(0) possibly_damaging(0.634) TCGA-49-6743-01 11 124412648 124412648 C T OR8B12 Silent p.R301R 0.40 TCGA-49-6743-01 11 125848198 125848198 C A CDON Splice_Site p.X1119_splice 0.35 TCGA-49-6743-01 11 126146969 126146969 G A FOXRED1 Missense_Mutation p.E369K 0.08 deleterious(0.01) benign(0.395) TCGA-49-6743-01 11 1267459 1267459 A T MUC5B Missense_Mutation p.R3117W 0.11 unknown(0) TCGA-49-6743-01 11 1267460 1267460 G T MUC5B Missense_Mutation p.R3117M 0.14 unknown(0) TCGA-49-6743-01 11 128709648 128709648 G C KCNJ1 Missense_Mutation p.S183C 0.20 deleterious(0) probably_damaging(0.974) TCGA-49-6743-01 11 18955953 18955953 G C MRGPRX1 Missense_Mutation p.P127A 0.06 deleterious(0) probably_damaging(0.998) TCGA-49-6743-01 11 20657894 20657894 A T SLC6A5 Missense_Mutation p.R556W 0.17 deleterious(0.01) probably_damaging(0.957) TCGA-49-6743-01 11 30033301 30033301 T G KCNA4 Missense_Mutation p.I309L 0.16 tolerated(0.09) benign(0.143) TCGA-49-6743-01 11 3114894 3114894 C A OSBPL5 Splice_Site p.X604_splice 0.17 TCGA-49-6743-01 11 33566428 33566428 C A KIAA1549L Missense_Mutation p.S666R 0.19 deleterious_low_confidence(0) benign(0.177) TCGA-49-6743-01 11 43283962 43283962 C A HNRNPKP3 RNA 0.19 TCGA-49-6743-01 11 43775601 43775601 A G HSD17B12 Silent p.A71A 0.08 TCGA-49-6743-01 11 4389382 4389382 G T OR52B4 Silent p.I48I 0.13 TCGA-49-6743-01 11 46703732 46703732 C T ARHGAP1 Silent p.G106G 0.07 TCGA-49-6743-01 11 46772989 46772989 G A CKAP5 Silent p.F1743F 0.10 TCGA-49-6743-01 11 47187910 47187910 G A ARFGAP2 Missense_Mutation p.P485L 0.26 deleterious(0) probably_damaging(1) TCGA-49-6743-01 11 47363610 47363610 C T MYBPC3 Silent p.R574R 0.32 TCGA-49-6743-01 11 47712125 47712125 C A AGBL2 Silent p.T378T 0.24 TCGA-49-6743-01 11 48328183 48328183 C A OR4S1 Silent p.R137R 0.26 TCGA-49-6743-01 11 48346634 48346634 G T OR4C3 Missense_Mutation p.V48L 0.25 tolerated(0.4) benign(0.238) TCGA-49-6743-01 11 49168333 49168333 G A FOLH1 Missense_Mutation p.A743V 0.08 deleterious(0.01) possibly_damaging(0.47) TCGA-49-6743-01 11 49179509 49179509 C A FOLH1 Missense_Mutation p.M509I 0.26 tolerated(0.39) benign(0) TCGA-49-6743-01 11 51411635 51411635 A G OR4A5 Missense_Mutation p.I254T 0.06 tolerated_low_confidence(0.08) benign(0.057) TCGA-49-6743-01 11 51411646 51411646 G T OR4A5 Silent p.P250P 0.07 TCGA-49-6743-01 11 51411647 51411647 G T OR4A5 Missense_Mutation p.P250H 0.07 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-49-6743-01 11 5529825 5529825 C A UBQLN3 Missense_Mutation p.G322W 0.09 deleterious(0) probably_damaging(0.961) TCGA-49-6743-01 11 55322489 55322489 C A OR4C15 Missense_Mutation p.P236Q 0.17 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-49-6743-01 11 55322750 55322750 T C OR4C15 Missense_Mutation p.M323T 0.14 tolerated_low_confidence(0.43) benign(0.015) TCGA-49-6743-01 11 55339835 55339835 A G OR4C16 Missense_Mutation p.R78G 0.14 deleterious(0) possibly_damaging(0.77) TCGA-49-6743-01 11 5537603 5537603 G T UBQLNL Missense_Mutation p.D23E 0.09 tolerated(0.07) benign(0.026) TCGA-49-6743-01 11 55433513 55433513 G A OR4C6 Missense_Mutation p.E291K 0.13 deleterious_low_confidence(0) possibly_damaging(0.637) TCGA-49-6743-01 11 55595315 55595315 G T OR5L2 Missense_Mutation p.E207D 0.11 deleterious(0.02) benign(0.024) TCGA-49-6743-01 11 55944406 55944406 G A OR5J2 Missense_Mutation p.G105R 0.09 tolerated(0.35) possibly_damaging(0.72) TCGA-49-6743-01 11 56128329 56128329 G T OR8J1 Missense_Mutation p.A203S 0.11 tolerated(0.75) benign(0.124) TCGA-49-6743-01 11 56185520 56185520 G A OR5R1 Silent p.L63L 0.12 TCGA-49-6743-01 11 56258247 56258247 A T OR5M8 Silent p.I200I 0.16 TCGA-49-6743-01 11 58190721 58190721 G A OR5B2 Missense_Mutation p.T5M 0.11 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-49-6743-01 11 58714572 58714572 G A GLYATL1 Intron 0.07 TCGA-49-6743-01 11 59224981 59224981 A T OR4D6 Missense_Mutation p.Q183L 0.14 tolerated(0.1) probably_damaging(0.997) TCGA-49-6743-01 11 59573990 59573990 C G MRPL16 Missense_Mutation p.E196Q 0.10 tolerated(0.35) benign(0.005) TCGA-49-6743-01 11 61254429 61254429 C T PPP1R32 Missense_Mutation p.P282S 0.10 tolerated(0.49) benign(0.014) TCGA-49-6743-01 11 61490344 61490344 C T DAGLA Silent p.I107I 0.06 TCGA-49-6743-01 11 62444113 62444113 T C UBXN1 3'UTR 0.15 TCGA-49-6743-01 11 62656092 62656092 C T SLC3A2 Missense_Mutation p.S608F 0.08 deleterious(0.01) possibly_damaging(0.713) TCGA-49-6743-01 11 62762206 62762206 A G SLC22A8 Missense_Mutation p.Y342H 0.12 deleterious(0) probably_damaging(1) TCGA-49-6743-01 11 63067051 63067051 G A SLC22A10 Silent p.L340L 0.15 TCGA-49-6743-01 11 63233728 63233728 C A HRASLS5 Missense_Mutation p.D201Y 0.14 deleterious(0) probably_damaging(1) TCGA-49-6743-01 11 63967652 63967652 C T STIP1 Nonsense_Mutation p.Q378* 0.13 TCGA-49-6743-01 11 64854853 64854853 G A ZFPL1 Missense_Mutation p.D232N 0.09 deleterious(0.02) benign(0.228) TCGA-49-6743-01 11 65124211 65124211 G T TIGD3 Missense_Mutation p.R311L 0.15 deleterious(0) probably_damaging(0.997) TCGA-49-6743-01 11 65271399 65271399 A T MALAT1 RNA 0.15 TCGA-49-6743-01 11 65373321 65373321 C T MAP3K11 Missense_Mutation p.R581K 0.17 tolerated(0.06) possibly_damaging(0.745) TCGA-49-6743-01 11 65819837 65819837 G T SF3B2 5'UTR 0.14 TCGA-49-6743-01 11 6588995 6588995 C T DNHD1 Nonsense_Mutation p.Q4086* 0.12 TCGA-49-6743-01 11 6891652 6891652 A G OR10A2 Missense_Mutation p.K223E 0.16 deleterious(0) possibly_damaging(0.5) TCGA-49-6743-01 11 72397194 72397194 G A ARAP1 Missense_Mutation p.R1410W 0.15 deleterious(0) probably_damaging(1) TCGA-49-6743-01 11 74915580 74915580 G C SLCO2B1 Missense_Mutation p.L695F 0.31 tolerated_low_confidence(0.24) possibly_damaging(0.553) TCGA-49-6743-01 11 76062273 76062273 C T PRKRIR Missense_Mutation p.E641K 0.11 tolerated(0.05) benign(0.434) TCGA-49-6743-01 11 85630436 85630436 G A CCDC83 Silent p.V406V 0.08 TCGA-49-6743-01 11 89075295 89075295 G C NOX4 Missense_Mutation p.C428W 0.10 deleterious(0) probably_damaging(0.989) TCGA-49-6743-01 11 89185034 89185034 T A NOX4 Silent p.A61A 0.26 TCGA-49-6743-01 11 89424083 89424083 C T FOLH1B RNA 0.10 TCGA-49-6743-01 11 92086967 92086967 T C FAT3 Silent p.N563N 0.09 TCGA-49-6743-01 11 92531738 92531738 G A FAT3 Silent p.V1853V 0.15 TCGA-49-6743-01 11 95569395 95569395 C T MTMR2 Missense_Mutation p.V563I 0.18 tolerated(0.06) benign(0.052) TCGA-49-6743-01 12 101504243 101504243 C A ANO4 Silent p.A702A 0.19 TCGA-49-6743-01 12 10217378 10217378 C A CLEC9A Nonsense_Mutation p.Y173* 0.26 TCGA-49-6743-01 12 10223795 10223795 C A CLEC1A 3'UTR 0.22 TCGA-49-6743-01 12 10312526 10312526 C G OLR1 Missense_Mutation p.A259P 0.31 tolerated(0.3) benign(0.03) TCGA-49-6743-01 12 104089375 104089375 C T STAB2 Silent p.L1141L 0.23 TCGA-49-6743-01 12 10603114 10603114 C T KLRC1 Missense_Mutation p.M84I 0.22 tolerated(0.16) benign(0.023) TCGA-49-6743-01 12 107080806 107080806 C T RFX4 Silent p.L183L 0.12 TCGA-49-6743-01 12 109935654 109935654 C G UBE3B Missense_Mutation p.L249V 0.06 tolerated(0.07) benign(0.005) TCGA-49-6743-01 12 118615075 118615075 C G TAOK3 Missense_Mutation p.K542N 0.09 deleterious(0.01) possibly_damaging(0.854) TCGA-49-6743-01 12 121426785 121426785 G T HNF1A Missense_Mutation p.R159L 0.32 deleterious(0) probably_damaging(0.999) TCGA-49-6743-01 12 121439028 121439028 C A HNF1A 3'UTR 0.38 TCGA-49-6743-01 12 121465579 121465579 G C OASL Silent p.L233L 0.07 TCGA-49-6743-01 12 121600272 121600272 C A P2RX7 Missense_Mutation p.T161N 0.10 deleterious(0) probably_damaging(0.998) TCGA-49-6743-01 12 122492852 122492852 A T BCL7A Missense_Mutation p.Q194L 0.14 tolerated_low_confidence(0.19) benign(0.017) TCGA-49-6743-01 12 123103061 123103061 G T KNTC1 Missense_Mutation p.D2040Y 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-49-6743-01 12 129429874 129429874 G C GLT1D1 Missense_Mutation p.D127H 0.15 deleterious(0.03) probably_damaging(0.963) TCGA-49-6743-01 12 129467749 129467749 G A GLT1D1 3'UTR 0.13 TCGA-49-6743-01 12 132325149 132325149 G A MMP17 Missense_Mutation p.G152R 0.06 tolerated(0.06) probably_damaging(0.997) TCGA-49-6743-01 12 132514351 132514351 G C EP400 Silent p.L1829L 0.06 TCGA-49-6743-01 12 1943850 1943850 A T LRTM2 Missense_Mutation p.E359V 0.11 deleterious(0) benign(0.196) TCGA-49-6743-01 12 21788509 21788509 C T LDHB Silent p.L324L 0.18 TCGA-49-6743-01 12 22063216 22063216 A G ABCC9 Missense_Mutation p.S399P 0.15 deleterious(0) probably_damaging(0.991) TCGA-49-6743-01 12 25260973 25260973 C G LRMP Missense_Mutation p.H493Q 0.25 deleterious(0.01) benign(0.351) TCGA-49-6743-01 12 30784891 30784891 T A IPO8 Missense_Mutation p.E985V 0.33 tolerated(0.08) benign(0.123) TCGA-49-6743-01 12 51252604 51252604 T C TMPRSS12 Silent p.N140N 0.22 TCGA-49-6743-01 12 51281193 51281193 A G TMPRSS12 Missense_Mutation p.E315G 0.16 tolerated(0.05) benign(0.065) TCGA-49-6743-01 12 51753051 51753051 G T GALNT6 Silent p.T411T 0.12 TCGA-49-6743-01 12 51883654 51883654 G T SLC4A8 Silent p.L873L 0.25 TCGA-49-6743-01 12 52282935 52282935 C A ANKRD33 Missense_Mutation p.Q161K 0.11 deleterious(0.01) probably_damaging(0.99) TCGA-49-6743-01 12 52627305 52627305 G - KRT7 Frame_Shift_Del p.L76Cfs*122 0.16 TCGA-49-6743-01 12 53040623 53040623 G A KRT2 Missense_Mutation p.A457V 0.06 deleterious(0.02) possibly_damaging(0.63) TCGA-49-6743-01 12 53823690 53823690 C A AMHR2 Silent p.R406R 0.19 TCGA-49-6743-01 12 55615073 55615073 A T OR10A7 Missense_Mutation p.R89W 0.23 deleterious(0) possibly_damaging(0.489) TCGA-49-6743-01 12 65639480 65639480 C T LEMD3 Nonsense_Mutation p.Q807* 0.25 TCGA-49-6743-01 12 66704131 66704131 G T HELB Missense_Mutation p.G475W 0.23 deleterious(0) probably_damaging(1) TCGA-49-6743-01 12 7343064 7343064 C A PEX5 Silent p.R31R 0.12 TCGA-49-6743-01 12 7522232 7522232 C A CD163L1 Nonsense_Mutation p.E1254* 0.33 TCGA-49-6743-01 12 78400535 78400535 G T NAV3 Missense_Mutation p.G406V 0.23 tolerated_low_confidence(0.11) benign(0.021) TCGA-49-6743-01 12 95602831 95602831 G A FGD6 Silent p.L743L 0.08 TCGA-49-6743-01 12 99640284 99640284 G T ANKS1B Missense_Mutation p.N705K 0.29 tolerated(0.16) benign(0.081) TCGA-49-6743-01 13 101707770 101707770 A T NALCN Silent p.S1698S 0.07 TCGA-49-6743-01 13 101760057 101760057 C A NALCN Missense_Mutation p.E816D 0.22 deleterious(0.04) possibly_damaging(0.688) TCGA-49-6743-01 13 101944443 101944443 G T NALCN Missense_Mutation p.N315K 0.15 deleterious(0) probably_damaging(0.999) TCGA-49-6743-01 13 103419696 103419696 C G TEX30 Missense_Mutation p.R144T 0.11 deleterious(0) probably_damaging(1) TCGA-49-6743-01 13 103441508 103441508 C T KDELC1 Missense_Mutation p.G383S 0.15 deleterious(0.02) probably_damaging(1) TCGA-49-6743-01 13 108922168 108922168 A T TNFSF13B 5'UTR 0.27 TCGA-49-6743-01 13 110823055 110823055 G A COL4A1 Missense_Mutation p.P1194L 0.13 probably_damaging(0.999) TCGA-49-6743-01 13 113729480 113729480 G A MCF2L Missense_Mutation p.E429K 0.17 tolerated(0.31) benign(0.042) TCGA-49-6743-01 13 27333674 27333674 G A GPR12 Silent p.L97L 0.08 TCGA-49-6743-01 13 33271019 33271019 C T PDS5B Missense_Mutation p.S527L 0.13 tolerated(0.09) benign(0.045) TCGA-49-6743-01 13 39262664 39262664 T G FREM2 Missense_Mutation p.Y395D 0.14 deleterious(0) probably_damaging(0.974) TCGA-49-6743-01 13 39265303 39265303 A G FREM2 Silent p.E1274E 0.15 TCGA-49-6743-01 13 41345224 41345224 G A MRPS31 Missense_Mutation p.H17Y 0.16 tolerated_low_confidence(0.76) benign(0.076) TCGA-49-6743-01 13 41345258 41345258 G C MRPS31 Silent p.V5V 0.19 TCGA-49-6743-01 13 51921265 51921265 C G SERPINE3 Missense_Mutation p.R199G 0.20 deleterious(0.01) possibly_damaging(0.71) TCGA-49-6743-01 13 52604958 52604958 A T UTP14C Missense_Mutation p.N673I 0.26 deleterious(0) probably_damaging(0.992) TCGA-49-6743-01 13 61986680 61986680 T G PCDH20 Missense_Mutation p.K518Q 0.07 tolerated(0.12) benign(0.003) TCGA-49-6743-01 13 61986682 61986682 A C PCDH20 Missense_Mutation p.V517G 0.07 tolerated(0.33) benign(0.001) TCGA-49-6743-01 13 70293684 70293684 C A KLHL1 Missense_Mutation p.S611I 0.21 deleterious(0.01) probably_damaging(0.976) TCGA-49-6743-01 13 72147052 72147052 G T DACH1 Missense_Mutation p.H409N 0.18 possibly_damaging(0.79) TCGA-49-6743-01 13 80117712 80117712 G T NDFIP2 Missense_Mutation p.W245C 0.21 deleterious(0) probably_damaging(0.998) TCGA-49-6743-01 13 99459984 99459984 C G DOCK9 Missense_Mutation p.Q1829H 0.10 tolerated(0.1) probably_damaging(0.999) TCGA-49-6743-01 14 100402669 100402669 A G EML1 Missense_Mutation p.Y717C 0.15 deleterious(0.02) possibly_damaging(0.819) TCGA-49-6743-01 14 104135917 104135917 G - KLC1 Frame_Shift_Del p.G290Afs*11 0.13 TCGA-49-6743-01 14 104194095 104194095 C T ZFYVE21 Missense_Mutation p.R68C 0.21 deleterious(0) probably_damaging(0.979) TCGA-49-6743-01 14 104470657 104470657 T G TDRD9 Silent p.V522V 0.13 TCGA-49-6743-01 14 19553558 19553558 G A POTEG Missense_Mutation p.D48N 0.04 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-49-6743-01 14 20249188 20249188 A T OR4M1 Missense_Mutation p.N236I 0.09 tolerated(0.14) benign(0.278) TCGA-49-6743-01 14 20344489 20344489 G T OR4K2 Missense_Mutation p.W21C 0.03 deleterious(0.05) possibly_damaging(0.447) TCGA-49-6743-01 14 20404637 20404637 T A OR4K1 Missense_Mutation p.L271H 0.06 deleterious(0) probably_damaging(0.964) TCGA-49-6743-01 14 20404658 20404658 G T OR4K1 Missense_Mutation p.C278F 0.06 tolerated(1) benign(0.03) TCGA-49-6743-01 14 20612592 20612592 A G OR4N5 Missense_Mutation p.K233R 0.22 tolerated(1) probably_damaging(0.999) TCGA-49-6743-01 14 20612593 20612593 G A OR4N5 Silent p.K233K 0.23 TCGA-49-6743-01 14 20692166 20692166 C A OR11H6 Missense_Mutation p.L100I 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-49-6743-01 14 21463338 21463338 T G METTL17 Missense_Mutation p.N297K 0.18 deleterious(0.02) possibly_damaging(0.844) TCGA-49-6743-01 14 22102184 22102184 G T OR10G2 Missense_Mutation p.P272H 0.14 tolerated(0.44) possibly_damaging(0.869) TCGA-49-6743-01 14 22102185 22102185 G T OR10G2 Missense_Mutation p.P272T 0.15 tolerated(0.46) benign(0.026) TCGA-49-6743-01 14 22294192 22294192 C T TRAV10 Missense_Mutation p.T99I 0.13 tolerated(0.07) benign(0.43) TCGA-49-6743-01 14 22987458 22987458 C T TRAJ26 Silent p.P12P 0.27 TCGA-49-6743-01 14 23421778 23421778 C A HAUS4 Missense_Mutation p.S57I 0.25 deleterious(0) possibly_damaging(0.718) TCGA-49-6743-01 14 23872645 23872645 C T MYH6 Silent p.E270E 0.11 TCGA-49-6743-01 14 50626680 50626680 C T SOS2 Missense_Mutation p.E441K 0.07 deleterious(0.02) benign(0.02) TCGA-49-6743-01 14 52179252 52179252 G T FRMD6 Nonsense_Mutation p.G278* 0.15 TCGA-49-6743-01 14 53178230 53178230 G T PSMC6 Silent p.R157R 0.20 TCGA-49-6743-01 14 56233047 56233047 G C RP11-813I20.2 Intron 0.14 TCGA-49-6743-01 14 60212963 60212963 C A RTN1 Missense_Mutation p.G160C 0.16 deleterious(0.04) possibly_damaging(0.867) TCGA-49-6743-01 14 64450498 64450499 - T SYNE2 Frame_Shift_Ins p.D684* 0.16 TCGA-49-6743-01 14 68151874 68151874 C G RDH11 Missense_Mutation p.E238Q 0.15 deleterious(0.01) benign(0.017) TCGA-49-6743-01 14 69346715 69346715 C T ACTN1 Missense_Mutation p.M748I 0.21 tolerated(0.17) benign(0.01) TCGA-49-6743-01 14 71209206 71209206 T A MAP3K9 Missense_Mutation p.I477F 0.22 deleterious(0.01) possibly_damaging(0.686) TCGA-49-6743-01 14 71485880 71485880 G T PCNX Splice_Site p.X1050_splice 0.25 TCGA-49-6743-01 14 74757123 74757123 C T ABCD4 Missense_Mutation p.D400N 0.19 tolerated(0.6) benign(0.001) TCGA-49-6743-01 14 74989535 74989535 T A LTBP2 Missense_Mutation p.S873C 0.15 deleterious(0.04) probably_damaging(0.926) TCGA-49-6743-01 14 75070356 75070356 T C LTBP2 Missense_Mutation p.T183A 0.09 deleterious(0) probably_damaging(0.993) TCGA-49-6743-01 14 75420616 75420616 C T PGF Missense_Mutation p.E37K 0.10 tolerated(0.29) benign(0.071) TCGA-49-6743-01 14 75643138 75643138 G A TMED10 Missense_Mutation p.H49Y 0.11 deleterious(0.01) probably_damaging(0.952) TCGA-49-6743-01 14 90651131 90651131 G A KCNK13 Silent p.T337T 0.09 TCGA-49-6743-01 14 93813555 93813558 GTTA - COX8C 5'UTR 0.33 TCGA-49-6743-01 14 94004362 94004362 G A UNC79 Missense_Mutation p.V207I 0.10 tolerated(0.29) probably_damaging(0.994) TCGA-49-6743-01 14 94088960 94088960 C T UNC79 Missense_Mutation p.A1617V 0.26 tolerated_low_confidence(0.05) benign(0.001) TCGA-49-6743-01 14 94756593 94756593 A T SERPINA10 Missense_Mutation p.M113K 0.32 deleterious(0.03) possibly_damaging(0.479) TCGA-49-6743-01 14 96730746 96730746 C A BDKRB1 Missense_Mutation p.R243S 0.18 tolerated(0.62) benign(0.003) TCGA-49-6743-01 15 102312206 102312206 C G RN7SL209P 3'Flank 0.11 TCGA-49-6743-01 15 102358575 102358575 C A OR4F15 Silent p.L62L 0.16 TCGA-49-6743-01 15 23932040 23932040 C G NDN Missense_Mutation p.V109L 0.09 tolerated(1) benign(0.173) TCGA-49-6743-01 15 25444509 25444509 T A SNORD115-14 3'Flank 0.12 TCGA-49-6743-01 15 25599515 25599515 T C UBE3A Missense_Mutation p.D783G 0.13 deleterious(0.01) benign(0.167) TCGA-49-6743-01 15 28231772 28231772 T A OCA2 Silent p.I400I 0.06 TCGA-49-6743-01 15 30012003 30012003 G A TJP1 Missense_Mutation p.S994L 0.09 tolerated_low_confidence(0.38) benign(0.002) TCGA-49-6743-01 15 37184518 37184518 T A MEIS2 Silent p.P430P 0.11 TCGA-49-6743-01 15 40582826 40582826 C T PLCB2 Missense_Mutation p.R1054Q 0.09 tolerated(0.13) benign(0.02) TCGA-49-6743-01 15 40916208 40916208 G C CASC5 Missense_Mutation p.S1275T 0.28 tolerated(0.87) benign(0.001) TCGA-49-6743-01 15 41750015 41750015 G A RTF1 Silent p.E201E 0.09 TCGA-49-6743-01 15 41860509 41860509 A T TYRO3 Missense_Mutation p.E352D 0.07 tolerated(0.11) benign(0.008) TCGA-49-6743-01 15 42021492 42021492 C A MGA Nonsense_Mutation p.S1263* 0.20 TCGA-49-6743-01 15 44057715 44057715 G C PDIA3 Missense_Mutation p.E224Q 0.12 tolerated(0.13) benign(0.212) TCGA-49-6743-01 15 44058167 44058167 G T PDIA3 Missense_Mutation p.D268Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-49-6743-01 15 44101975 44101975 T C MFAP1 Missense_Mutation p.Y342C 0.19 deleterious(0) probably_damaging(0.997) TCGA-49-6743-01 15 44865871 44865871 G A SPG11 Nonsense_Mutation p.Q2027* 0.16 TCGA-49-6743-01 15 45470396 45470396 T C SHF Missense_Mutation p.M138V 0.17 deleterious(0.01) possibly_damaging(0.636) TCGA-49-6743-01 15 48062707 48062707 A T SEMA6D Missense_Mutation p.E649D 0.11 tolerated(0.25) benign(0.014) TCGA-49-6743-01 15 48451078 48451078 G A MYEF2 Silent p.F253F 0.10 TCGA-49-6743-01 15 49031278 49031278 A G CEP152 Missense_Mutation p.V1434A 0.19 tolerated(0.16) benign(0.009) TCGA-49-6743-01 15 49833939 49833939 C T FAM227B Missense_Mutation p.S271N 0.22 tolerated(0.18) benign(0.308) TCGA-49-6743-01 15 50789393 50789393 G A USP8 Nonsense_Mutation p.W1001* 0.30 TCGA-49-6743-01 15 52517702 52517702 C A MYO5C Nonsense_Mutation p.E1079* 0.31 TCGA-49-6743-01 15 52646177 52646177 G C MYO5A Nonsense_Mutation p.S1153* 0.20 TCGA-49-6743-01 15 53997423 53997423 T A WDR72 Silent p.P370P 0.35 TCGA-49-6743-01 15 55669161 55669161 C T CCPG1 Missense_Mutation p.C147Y 0.07 deleterious(0) probably_damaging(0.945) TCGA-49-6743-01 15 55965661 55965661 T C PRTG Missense_Mutation p.Y587C 0.16 deleterious(0) probably_damaging(1) TCGA-49-6743-01 15 59944431 59944431 G A GTF2A2 Nonsense_Mutation p.Q16* 0.09 TCGA-49-6743-01 15 62250877 62250877 C A VPS13C Missense_Mutation p.R1365S 0.11 tolerated(0.14) benign(0.066) TCGA-49-6743-01 15 68065081 68065081 A G MAP2K5 Silent p.E411E 0.05 TCGA-49-6743-01 15 71125260 71125260 G T LARP6 Missense_Mutation p.P203T 0.11 tolerated(0.13) benign(0.142) TCGA-49-6743-01 15 72972385 72972385 C T HIGD2B 5'UTR 0.14 TCGA-49-6743-01 15 73617522 73617522 A G HCN4 Silent p.F584F 0.22 TCGA-49-6743-01 15 74882171 74882171 C T ARID3B Silent p.I236I 0.10 TCGA-49-6743-01 15 75664471 75664471 C T SIN3A Missense_Mutation p.R1224H 0.12 tolerated(0.13) benign(0.002) TCGA-49-6743-01 15 75949596 75949596 C G SNX33 3'UTR 0.07 TCGA-49-6743-01 15 86312160 86312160 G T KLHL25 Silent p.G294G 0.15 TCGA-49-6743-01 15 88680696 88680696 G A NTRK3 Silent p.L187L 0.29 TCGA-49-6743-01 15 89056312 89056312 C A DET1 Missense_Mutation p.R519L 0.12 tolerated(0.15) possibly_damaging(0.591) TCGA-49-6743-01 15 89385009 89385009 A G ACAN Missense_Mutation p.D223G 0.10 deleterious(0) unknown(0) TCGA-49-6743-01 16 1476238 1476239 - A C16orf91 Frame_Shift_Ins p.G129Wfs*17 0.27 TCGA-49-6743-01 16 21327258 21327258 T C CRYM-AS1 RNA 0.30 TCGA-49-6743-01 16 23641470 23641470 C T PALB2 Missense_Mutation p.E669K 0.30 tolerated(0.18) benign(0.258) TCGA-49-6743-01 16 2752407 2752408 CC - KCTD5 Frame_Shift_Del p.V204Gfs*74 0.27 TCGA-49-6743-01 16 29845114 29845114 G C MVP Missense_Mutation p.D128H 0.21 deleterious(0) probably_damaging(0.992) TCGA-49-6743-01 16 30516760 30516760 G A ITGAL Silent p.L781L 0.08 TCGA-49-6743-01 16 31332815 31332815 C A ITGAM Silent p.I624I 0.08 TCGA-49-6743-01 16 55362640 55362640 G T IRX6 Silent p.G250G 0.11 TCGA-49-6743-01 16 64981653 64981653 C A CDH11 Missense_Mutation p.R748S 0.10 tolerated(0.66) probably_damaging(0.998) TCGA-49-6743-01 16 65016163 65016163 T A CDH11 Silent p.V347V 0.13 TCGA-49-6743-01 16 71163573 71163573 G C HYDIN Missense_Mutation p.F399L 0.30 probably_damaging(0.916) TCGA-49-6743-01 16 81969915 81969915 C T PLCG2 Missense_Mutation p.S995L 0.35 deleterious(0.01) probably_damaging(1) TCGA-49-6743-01 16 85946793 85946793 C T IRF8 Silent p.A168A 0.22 TCGA-49-6743-01 16 85946794 85946794 T A IRF8 Missense_Mutation p.C169S 0.21 tolerated(0.1) benign(0.004) TCGA-49-6743-01 16 89346599 89346599 C A ANKRD11 Silent p.P2117P 0.33 TCGA-49-6743-01 16 89351264 89351264 G C ANKRD11 Silent p.V562V 0.26 TCGA-49-6743-01 17 15554713 15554713 C T RP11-385D13.1 Missense_Mutation p.E71K 0.24 tolerated_low_confidence(0.21) benign(0.009) TCGA-49-6743-01 17 27011621 27011621 C G SUPT6H Silent p.L749L 0.09 TCGA-49-6743-01 17 27425944 27425944 T A MYO18A Missense_Mutation p.K1227M 0.17 tolerated(0.09) probably_damaging(0.999) TCGA-49-6743-01 17 27959179 27959179 C T SSH2 Silent p.L984L 0.08 TCGA-49-6743-01 17 33482328 33482328 T A UNC45B Missense_Mutation p.L218Q 0.19 deleterious(0) probably_damaging(0.928) TCGA-49-6743-01 17 3663533 3663533 G A ITGAE Missense_Mutation p.P216L 0.20 deleterious(0.03) possibly_damaging(0.843) TCGA-49-6743-01 17 38953472 38953472 G A KRT28 Missense_Mutation p.P251L 0.24 deleterious(0) probably_damaging(1) TCGA-49-6743-01 17 40282492 40282492 G A RAB5C Missense_Mutation p.P43L 0.27 deleterious(0) probably_damaging(0.958) TCGA-49-6743-01 17 42745463 42745463 T C C17orf104 Silent p.D728D 0.25 TCGA-49-6743-01 17 43923548 43923548 G A SPPL2C Missense_Mutation p.V426M 0.14 deleterious(0) probably_damaging(0.992) TCGA-49-6743-01 17 45822274 45822274 G T TBX21 Missense_Mutation p.A384S 0.22 tolerated(0.95) benign(0) TCGA-49-6743-01 17 45917699 45917699 C A SCRN2 Missense_Mutation p.A72S 0.11 deleterious(0.02) possibly_damaging(0.779) TCGA-49-6743-01 17 46673820 46673820 C A HOXB6 Silent p.A210A 0.10 TCGA-49-6743-01 17 46805973 46805973 C A HOXB13 5'UTR 0.17 TCGA-49-6743-01 17 48741471 48741471 A T ABCC3 Missense_Mutation p.Q446L 0.22 tolerated(0.21) benign(0.443) TCGA-49-6743-01 17 48917894 48917894 C T WFIKKN2 Silent p.V415V 0.12 TCGA-49-6743-01 17 53150368 53150368 G T STXBP4 Silent p.V373V 0.12 TCGA-49-6743-01 17 54912335 54912335 A T DGKE Missense_Mutation p.H60L 0.14 deleterious(0) probably_damaging(0.984) TCGA-49-6743-01 17 56288035 56288035 C T MKS1 Missense_Mutation p.E337K 0.13 deleterious(0.01) benign(0.299) TCGA-49-6743-01 17 58700947 58700947 A G PPM1D Missense_Mutation p.I180V 0.19 deleterious(0.03) possibly_damaging(0.708) TCGA-49-6743-01 17 59560493 59560493 C A TBX4 Missense_Mutation p.N418K 0.13 deleterious(0) probably_damaging(0.993) TCGA-49-6743-01 17 61611612 61611612 C G KCNH6 Silent p.L347L 0.05 TCGA-49-6743-01 17 67197798 67197798 G T ABCA10 Missense_Mutation p.H340N 0.26 tolerated(0.3) benign(0.017) TCGA-49-6743-01 17 67305562 67305562 T C ABCA5 Missense_Mutation p.I104V 0.22 tolerated(0.27) benign(0.005) TCGA-49-6743-01 17 72443246 72443246 T G GPRC5C 3'UTR 0.34 TCGA-49-6743-01 17 73487509 73487509 A T KIAA0195 Silent p.L453L 0.17 TCGA-49-6743-01 17 74155488 74155488 C T RNF157 Missense_Mutation p.R411K 0.19 tolerated_low_confidence(0.16) benign(0.359) TCGA-49-6743-01 17 77807724 77807724 C T CBX4 3'UTR 0.13 TCGA-49-6743-01 17 78293080 78293080 T C RNF213 Missense_Mutation p.C998R 0.25 probably_damaging(0.951) TCGA-49-6743-01 17 78388985 78388985 G A ENDOV 5'UTR 0.22 TCGA-49-6743-01 17 79982204 79982204 C T LRRC45 Silent p.L91L 0.07 TCGA-49-6743-01 17 80887119 80887119 C T TBCD Nonsense_Mutation p.R942* 0.24 TCGA-49-6743-01 17 8363341 8363341 A T NDEL1 Missense_Mutation p.K269N 0.23 deleterious(0) benign(0.183) TCGA-49-6743-01 17 9846526 9846526 C T GAS7 Missense_Mutation p.G215S 0.32 tolerated(0.37) benign(0.069) TCGA-49-6743-01 17 9939766 9939766 A G GAS7 Intron 0.19 TCGA-49-6743-01 18 13825904 13825904 G T MC5R Missense_Mutation p.G47V 0.24 deleterious(0) probably_damaging(0.999) TCGA-49-6743-01 18 19192284 19192284 C T SNRPD1 5'UTR 0.17 TCGA-49-6743-01 18 21044238 21044238 G A RIOK3 Missense_Mutation p.V132I 0.17 tolerated(0.23) benign(0.027) TCGA-49-6743-01 18 21921570 21921570 C A OSBPL1A Missense_Mutation p.G112V 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-49-6743-01 18 2599102 2599102 G C NDC80 Missense_Mutation p.D436H 0.14 deleterious(0.01) possibly_damaging(0.86) TCGA-49-6743-01 18 28650703 28650703 C T DSC2 Missense_Mutation p.D747N 0.09 deleterious(0.01) probably_damaging(1) TCGA-49-6743-01 18 3879413 3879413 G C DLGAP1 Missense_Mutation p.S219W 0.15 deleterious(0.05) possibly_damaging(0.821) TCGA-49-6743-01 18 43532389 43532389 G A EPG5 Missense_Mutation p.S410L 0.11 tolerated(0.94) benign(0) TCGA-49-6743-01 18 59757723 59757723 A T PIGN Missense_Mutation p.C757S 0.26 tolerated(1) benign(0) TCGA-49-6743-01 18 633349 633349 G T CLUL1 Missense_Mutation p.G303V 0.12 tolerated(0.31) probably_damaging(0.93) TCGA-49-6743-01 18 67540474 67540474 C G CD226 Missense_Mutation p.D246H 0.16 tolerated(0.23) benign(0.14) TCGA-49-6743-01 18 74587599 74587599 C T ZNF236 Silent p.H271H 0.24 TCGA-49-6743-01 18 905418 905418 C A ADCYAP1 Missense_Mutation p.L11M 0.19 deleterious(0) probably_damaging(1) TCGA-49-6743-01 19 10114362 10114362 C T COL5A3 Missense_Mutation p.R243H 0.19 unknown(0) TCGA-49-6743-01 19 10446542 10446542 C A ICAM3 Missense_Mutation p.V152L 0.20 tolerated(0.1) benign(0.052) TCGA-49-6743-01 19 10599996 10599996 C A KEAP1 Missense_Mutation p.G527V 0.30 deleterious(0) probably_damaging(0.988) TCGA-49-6743-01 19 10599997 10599997 C A KEAP1 Missense_Mutation p.G527C 0.30 deleterious(0) possibly_damaging(0.672) TCGA-49-6743-01 19 11505191 11505191 G A RGL3 Silent p.L680L 0.27 TCGA-49-6743-01 19 11552077 11552077 G T PRKCSH Nonsense_Mutation p.E125* 0.22 TCGA-49-6743-01 19 14938747 14938747 A T OR7A5 Missense_Mutation p.F103I 0.25 deleterious_low_confidence(0.01) benign(0.167) TCGA-49-6743-01 19 17452350 17452350 G T GTPBP3 Missense_Mutation p.Q471H 0.36 tolerated(0.07) benign(0.047) TCGA-49-6743-01 19 18120710 18120710 G T ARRDC2 Silent p.R237R 0.25 TCGA-49-6743-01 19 20727617 20727617 C A ZNF737 Silent p.S464S 0.18 TCGA-49-6743-01 19 22156888 22156888 T C ZNF208 Silent p.K316K 0.28 TCGA-49-6743-01 19 22939341 22939341 A C ZNF99 3'Flank 0.31 TCGA-49-6743-01 19 31040291 31040291 C A ZNF536 Silent p.P1255P 0.21 TCGA-49-6743-01 19 31769850 31769850 G C TSHZ3 Silent p.S283S 0.19 TCGA-49-6743-01 19 32928177 32928177 A T DPY19L3 Silent p.I176I 0.14 TCGA-49-6743-01 19 33355671 33355671 G A SLC7A9 Silent p.I33I 0.09 TCGA-49-6743-01 19 36046180 36046180 C T ATP4A Silent p.K738K 0.18 TCGA-49-6743-01 19 36291052 36291052 C A PRODH2 Missense_Mutation p.R500L 0.25 deleterious(0) probably_damaging(1) TCGA-49-6743-01 19 36884607 36884607 T C ZFP82 Missense_Mutation p.H212R 0.22 deleterious(0.04) possibly_damaging(0.891) TCGA-49-6743-01 19 37975783 37975783 G T ZNF570 Missense_Mutation p.R420M 0.19 deleterious(0) possibly_damaging(0.819) TCGA-49-6743-01 19 38160518 38160518 C A ZNF781 Missense_Mutation p.V178L 0.16 deleterious(0.03) benign(0.097) TCGA-49-6743-01 19 38709569 38709569 A G DPF1 Splice_Site p.X169_splice 0.11 TCGA-49-6743-01 19 38990388 38990388 G A RYR1 Missense_Mutation p.E2381K 0.15 benign(0.046) TCGA-49-6743-01 19 39018312 39018312 G T RYR1 Missense_Mutation p.W3571L 0.19 benign(0.017) TCGA-49-6743-01 19 39292692 39292692 C A LGALS4 Silent p.S255S 0.28 TCGA-49-6743-01 19 40320990 40320990 C A DYRK1B Intron 0.21 TCGA-49-6743-01 19 40408619 40408619 G A FCGBP Missense_Mutation p.S1407L 0.20 probably_damaging(0.999) TCGA-49-6743-01 19 40739743 40739743 G A AKT2 3'UTR 0.20 TCGA-49-6743-01 19 46832652 46832652 G T HIF3A Missense_Mutation p.W543C 0.14 deleterious(0) probably_damaging(0.999) TCGA-49-6743-01 19 47587669 47587669 G A ZC3H4 Missense_Mutation p.P384L 0.14 unknown(0) TCGA-49-6743-01 19 49658175 49658175 C T HRC Missense_Mutation p.R107K 0.18 deleterious(0.02) possibly_damaging(0.745) TCGA-49-6743-01 19 50504063 50504063 T A VRK3 Missense_Mutation p.K199M 0.24 deleterious(0) benign(0.405) TCGA-49-6743-01 19 51132709 51132709 C - SYT3 Frame_Shift_Del p.A375Pfs*76 0.15 TCGA-49-6743-01 19 51329005 51329005 G T KLK15 3'UTR 0.18 TCGA-49-6743-01 19 51451956 51451956 C G KLK5 Silent p.P222P 0.26 TCGA-49-6743-01 19 51728623 51728623 G A CD33 Missense_Mutation p.E63K 0.21 tolerated(0.5) benign(0.03) TCGA-49-6743-01 19 51830402 51830402 G A IGLON5 Missense_Mutation p.E239K 0.12 deleterious(0.03) possibly_damaging(0.477) TCGA-49-6743-01 19 52090622 52090622 G A ZNF175 Silent p.Q346Q 0.07 TCGA-49-6743-01 19 52870074 52870074 A G ZNF610 3'UTR 0.23 TCGA-49-6743-01 19 53959685 53959685 G T ZNF761 RNA 0.16 TCGA-49-6743-01 19 54675802 54675802 G A TMC4 Missense_Mutation p.R50W 0.08 deleterious(0.01) probably_damaging(1) TCGA-49-6743-01 19 54850419 54850419 T G LILRA4 5'UTR 0.22 TCGA-49-6743-01 19 54967589 54967589 G T LENG8 Missense_Mutation p.G464C 0.24 deleterious(0) probably_damaging(0.959) TCGA-49-6743-01 19 55106662 55106662 C G LILRA1 Silent p.G152G 0.21 TCGA-49-6743-01 19 55144158 55144158 A C LILRB1 Missense_Mutation p.N302T 0.21 tolerated(0.06) benign(0.007) TCGA-49-6743-01 19 56206162 56206162 G T EPN1 Missense_Mutation p.R531S 0.15 tolerated(0.74) benign(0.001) TCGA-49-6743-01 19 56735007 56735007 C A ZSCAN5A Missense_Mutation p.R194M 0.15 tolerated(0.05) possibly_damaging(0.472) TCGA-49-6743-01 19 56973727 56973727 G T ZNF667 Silent p.R5R 0.18 TCGA-49-6743-01 19 57803220 57803220 G C ZNF460 Missense_Mutation p.R437S 0.19 deleterious(0.02) possibly_damaging(0.897) TCGA-49-6743-01 19 9065838 9065838 G C MUC16 Nonsense_Mutation p.S7203* 0.17 TCGA-49-6743-01 19 9076419 9076419 G A MUC16 Missense_Mutation p.T3676I 0.35 unknown(0) TCGA-49-6743-01 1 103352612 103352612 C A COL11A1 Missense_Mutation p.G1537C 0.13 unknown(0) TCGA-49-6743-01 1 10702940 10702940 C A CASZ1 Missense_Mutation p.V1380L 0.26 deleterious_low_confidence(0.05) possibly_damaging(0.833) TCGA-49-6743-01 1 11174929 11174929 C T MTOR Missense_Mutation p.E2369K 0.07 deleterious(0) probably_damaging(0.949) TCGA-49-6743-01 1 115260835 115260835 C - CSDE1 Frame_Shift_Del p.F831Lfs*23 0.24 TCGA-49-6743-01 1 115418717 115418717 C A SYCP1 Missense_Mutation p.R229S 0.13 deleterious(0) probably_damaging(1) TCGA-49-6743-01 1 116243727 116243727 G T CASQ2 3'UTR 0.20 TCGA-49-6743-01 1 11718337 11718337 C T FBXO44 Silent p.F93F 0.29 TCGA-49-6743-01 1 1231130 1231130 G A ACAP3 Missense_Mutation p.A564V 0.50 tolerated(0.07) benign(0.003) TCGA-49-6743-01 1 12342995 12342995 C T VPS13D Silent p.V1612V 0.14 TCGA-49-6743-01 1 12785651 12785651 T A AADACL3 Missense_Mutation p.H247Q 0.33 tolerated(0.31) benign(0.109) TCGA-49-6743-01 1 12907644 12907644 G T HNRNPCL1 Silent p.R167R 0.11 TCGA-49-6743-01 1 12952861 12952861 C A PRAMEF10 Silent p.L437L 0.23 TCGA-49-6743-01 1 13036291 13036291 C A PRAMEF22 Silent p.A121A 0.16 TCGA-49-6743-01 1 144882856 144882856 C G PDE4DIP Missense_Mutation p.E1055Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-49-6743-01 1 145416370 145416370 G C HFE2 Missense_Mutation p.E239Q 0.05 tolerated(0.23) probably_damaging(0.996) TCGA-49-6743-01 1 145534231 145534231 G T ITGA10 Missense_Mutation p.G579V 0.10 deleterious(0) probably_damaging(1) TCGA-49-6743-01 1 145594089 145594089 G T POLR3C Silent p.I491I 0.16 TCGA-49-6743-01 1 152059439 152059439 C T TCHHL1 Missense_Mutation p.R240K 0.08 tolerated(0.15) benign(0.346) TCGA-49-6743-01 1 152084937 152084937 C A TCHH Silent p.V252V 0.28 TCGA-49-6743-01 1 152276201 152276201 C A FLG Nonsense_Mutation p.E3721* 0.29 TCGA-49-6743-01 1 152538491 152538491 C G LCE3E Missense_Mutation p.R65P 0.26 tolerated_low_confidence(0.18) unknown(0) TCGA-49-6743-01 1 152759771 152759771 C A LCE1E 5'UTR 0.25 TCGA-49-6743-01 1 152759772 152759772 C A LCE1E 5'UTR 0.25 TCGA-49-6743-01 1 154422427 154422427 G C IL6R Missense_Mutation p.R346T 0.10 tolerated(0.39) benign(0.07) TCGA-49-6743-01 1 154687378 154687378 C A KCNN3 Missense_Mutation p.Q601H 0.15 deleterious(0.04) possibly_damaging(0.748) TCGA-49-6743-01 1 154842045 154842045 G A KCNN3 Silent p.L132L 0.07 TCGA-49-6743-01 1 154842046 154842046 A G KCNN3 Missense_Mutation p.L132P 0.07 tolerated_low_confidence(0.3) probably_damaging(0.991) TCGA-49-6743-01 1 154987926 154987926 C T ZBTB7B Missense_Mutation p.P298S 0.11 tolerated(0.33) benign(0.137) TCGA-49-6743-01 1 155448134 155448134 A G ASH1L Silent p.S1509S 0.22 TCGA-49-6743-01 1 15545961 15545961 G A TMEM51 Missense_Mutation p.E162K 0.11 deleterious(0) probably_damaging(0.999) TCGA-49-6743-01 1 156025152 156025159 ACGACCGG - LAMTOR2 Frame_Shift_Del p.Y56* 0.11 TCGA-49-6743-01 1 156823990 156823990 G T INSRR Missense_Mutation p.T64N 0.30 tolerated(0.66) probably_damaging(0.974) TCGA-49-6743-01 1 156846215 156846215 T A NTRK1 Missense_Mutation p.S552R 0.18 deleterious(0) possibly_damaging(0.745) TCGA-49-6743-01 1 157667406 157667406 T G FCRL3 Intron 0.17 TCGA-49-6743-01 1 15819544 15819544 C A CASP9 Intron 0.31 TCGA-49-6743-01 1 158325127 158325127 G C CD1E Missense_Mutation p.M131I 0.15 tolerated(0.09) benign(0.008) TCGA-49-6743-01 1 158390109 158390109 G T OR10K2 Missense_Mutation p.P183H 0.10 deleterious(0) probably_damaging(1) TCGA-49-6743-01 1 158390110 158390110 G T OR10K2 Missense_Mutation p.P183T 0.12 deleterious(0) probably_damaging(1) TCGA-49-6743-01 1 158549292 158549292 A G OR10X1 Missense_Mutation p.L133S 0.17 deleterious(0) possibly_damaging(0.779) TCGA-49-6743-01 1 158746544 158746544 G C OR6N2 Missense_Mutation p.N294K 0.19 deleterious(0) possibly_damaging(0.858) TCGA-49-6743-01 1 159175928 159175928 G C DARC Missense_Mutation p.K235N 0.06 deleterious(0.05) possibly_damaging(0.881) TCGA-49-6743-01 1 160914948 160914948 T C ITLN2 Silent p.V320V 0.16 TCGA-49-6743-01 1 161475296 161475296 C T FCGR2A Silent p.P13P 0.22 TCGA-49-6743-01 1 161693311 161693311 C G FCRLB Silent p.P69P 0.10 TCGA-49-6743-01 1 166904644 166904645 GG A ILDR2 Frame_Shift_Del p.S258Lfs*16 0.12 TCGA-49-6743-01 1 171956843 171956843 G C DNM3 Missense_Mutation p.D95H 0.19 deleterious(0.03) benign(0.281) TCGA-49-6743-01 1 173883728 173883728 A T SERPINC1 Missense_Mutation p.L124Q 0.15 deleterious(0) probably_damaging(1) TCGA-49-6743-01 1 175292522 175292522 C A TNR Missense_Mutation p.G1350W 0.14 deleterious(0) probably_damaging(1) TCGA-49-6743-01 1 175306810 175306810 G A TNR Missense_Mutation p.R1130W 0.19 deleterious(0.02) probably_damaging(1) TCGA-49-6743-01 1 175372465 175372465 C T TNR Missense_Mutation p.E263K 0.27 tolerated(0.44) benign(0.001) TCGA-49-6743-01 1 175372608 175372608 A T TNR Missense_Mutation p.V215E 0.07 tolerated(0.08) possibly_damaging(0.632) TCGA-49-6743-01 1 176104162 176104162 G A RFWD2 Missense_Mutation p.P318S 0.11 tolerated(0.33) benign(0.038) TCGA-49-6743-01 1 176915100 176915100 C T ASTN1 Silent p.K737K 0.22 TCGA-49-6743-01 1 178269130 178269130 C T RASAL2 Missense_Mutation p.P112S 0.06 tolerated(0.21) benign(0.015) TCGA-49-6743-01 1 179077914 179077914 T A ABL2 Missense_Mutation p.N830Y 0.30 deleterious_low_confidence(0.01) benign(0.212) TCGA-49-6743-01 1 181701927 181701927 G A CACNA1E Missense_Mutation p.G902E 0.10 tolerated(0.08) probably_damaging(0.931) TCGA-49-6743-01 1 181727923 181727923 G A CACNA1E Silent p.L1508L 0.19 TCGA-49-6743-01 1 183079766 183079766 C A LAMC1 Missense_Mutation p.A333E 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-49-6743-01 1 183273936 183273936 C A NMNAT2 Intron 0.24 TCGA-49-6743-01 1 185703873 185703873 T C HMCN1 5'UTR 0.06 TCGA-49-6743-01 1 186957600 186957600 G T PLA2G4A Missense_Mutation p.R737I 0.19 deleterious_low_confidence(0.01) benign(0.221) TCGA-49-6743-01 1 19566829 19566829 G C EMC1 Missense_Mutation p.L250V 0.13 deleterious(0.01) possibly_damaging(0.876) TCGA-49-6743-01 1 196251442 196251442 C A KCNT2 Missense_Mutation p.L914F 0.13 deleterious(0) probably_damaging(0.996) TCGA-49-6743-01 1 197398719 197398719 C A CRB1 Nonsense_Mutation p.C939* 0.20 TCGA-49-6743-01 1 19981647 19981647 C G MINOS1-NBL1 Missense_Mutation p.Q42E 0.19 deleterious(0) probably_damaging(0.968) TCGA-49-6743-01 1 200008904 200008904 G C NR5A2 Missense_Mutation p.Q61H 0.16 tolerated_low_confidence(0.49) benign(0) TCGA-49-6743-01 1 203144721 203144721 G T MYBPH Missense_Mutation p.P55T 0.17 tolerated(0.14) benign(0.424) TCGA-49-6743-01 1 203652495 203652495 C G ATP2B4 Silent p.L54L 0.13 TCGA-49-6743-01 1 204218336 204218336 C A PLEKHA6 Silent p.L550L 0.14 TCGA-49-6743-01 1 204587561 204587561 C G LRRN2 Missense_Mutation p.Q520H 0.20 tolerated(0.08) benign(0.235) TCGA-49-6743-01 1 204587761 204587761 C T LRRN2 Missense_Mutation p.E454K 0.09 deleterious(0.01) benign(0.258) TCGA-49-6743-01 1 206224616 206224616 T A AVPR1B Missense_Mutation p.L59Q 0.17 deleterious(0) probably_damaging(0.951) TCGA-49-6743-01 1 207271573 207271573 C A C4BPB Silent p.I194I 0.16 TCGA-49-6743-01 1 207697300 207697300 G T CR1 Missense_Mutation p.V278L 0.14 deleterious(0.05) benign(0.405) TCGA-49-6743-01 1 210016917 210016917 G T DIEXF Nonsense_Mutation p.E635* 0.16 TCGA-49-6743-01 1 210522330 210522330 G A HHAT Intron 0.09 TCGA-49-6743-01 1 216172295 216172295 T A USH2A Silent p.T2197T 0.13 TCGA-49-6743-01 1 216737570 216737570 G T ESRRG Missense_Mutation p.H297N 0.16 tolerated(0.16) possibly_damaging(0.752) TCGA-49-6743-01 1 220145484 220145484 G A EPRS Missense_Mutation p.S1417F 0.07 tolerated(0.05) benign(0.004) TCGA-49-6743-01 1 220808735 220808735 G C MARK1 Silent p.S380S 0.16 TCGA-49-6743-01 1 22174305 22174305 G A HSPG2 Silent p.I2634I 0.20 TCGA-49-6743-01 1 228529168 228529168 G T OBSCN Nonsense_Mutation p.E6920* 0.23 TCGA-49-6743-01 1 228559662 228559662 C T OBSCN Silent p.F8018F 0.09 TCGA-49-6743-01 1 231931037 231931037 A G DISC1 Missense_Mutation p.T562A 0.14 tolerated(1) benign(0.005) TCGA-49-6743-01 1 234367459 234367459 G A SLC35F3 Missense_Mutation p.E194K 0.15 tolerated(0.23) possibly_damaging(0.587) TCGA-49-6743-01 1 236719428 236719429 - T HEATR1 Frame_Shift_Ins p.T1829Nfs*6 0.13 TCGA-49-6743-01 1 236722329 236722329 T A HEATR1 Missense_Mutation p.K1626M 0.23 deleterious(0) probably_damaging(0.945) TCGA-49-6743-01 1 23744405 23744405 C T TCEA3 Missense_Mutation p.R77Q 0.17 tolerated(0.11) benign(0.014) TCGA-49-6743-01 1 237753955 237753955 G C RYR2 Missense_Mutation p.G1275R 0.15 benign(0.06) TCGA-49-6743-01 1 237802366 237802366 G T RYR2 Missense_Mutation p.R2327M 0.20 probably_damaging(0.991) TCGA-49-6743-01 1 237837442 237837442 C A RYR2 Silent p.A2879A 0.16 TCGA-49-6743-01 1 237870252 237870252 T C RYR2 Missense_Mutation p.L3195P 0.15 probably_damaging(0.926) TCGA-49-6743-01 1 240371687 240371687 G T FMN2 Missense_Mutation p.G1192V 0.22 unknown(0) TCGA-49-6743-01 1 241904916 241904916 A C WDR64 Missense_Mutation p.N464H 0.27 deleterious(0) probably_damaging(0.987) TCGA-49-6743-01 1 244769071 244769071 A G C1orf101 Missense_Mutation p.Y793C 0.13 deleterious(0) probably_damaging(0.996) TCGA-49-6743-01 1 247200851 247200852 - T ZNF670 Frame_Shift_Ins p.R357Kfs*10 0.08 TCGA-49-6743-01 1 247655069 247655069 C T OR2W5 RNA 0.14 TCGA-49-6743-01 1 248262731 248262731 C A OR2L13 Silent p.P18P 0.22 TCGA-49-6743-01 1 248262983 248262983 C A OR2L13 Missense_Mutation p.F102L 0.31 tolerated(0.4) benign(0.018) TCGA-49-6743-01 1 248308574 248308574 A G OR2M5 Missense_Mutation p.N42S 0.10 deleterious(0) probably_damaging(0.999) TCGA-49-6743-01 1 248366656 248366656 G T OR2M3 Missense_Mutation p.G96V 0.27 deleterious(0) possibly_damaging(0.796) TCGA-49-6743-01 1 248436751 248436751 C A OR2T33 Silent p.A122A 0.12 TCGA-49-6743-01 1 248525429 248525429 C T OR2T4 Silent p.L183L 0.30 TCGA-49-6743-01 1 31501649 31501649 C A PUM1 Missense_Mutation p.M142I 0.22 deleterious_low_confidence(0.02) probably_damaging(0.943) TCGA-49-6743-01 1 38188793 38188793 C A EPHA10 Missense_Mutation p.G627V 0.10 deleterious(0) probably_damaging(0.959) TCGA-49-6743-01 1 41289899 41289899 C T KCNQ4 Missense_Mutation p.P421S 0.19 tolerated(0.75) benign(0.012) TCGA-49-6743-01 1 43131649 43131649 A T PPIH Splice_Site p.X113_splice 0.22 TCGA-49-6743-01 1 44087746 44087746 C T PTPRF 3'UTR 0.30 TCGA-49-6743-01 1 45223725 45223725 G T KIF2C Silent p.R379R 0.13 TCGA-49-6743-01 1 45228015 45228015 C G KIF2C Intron 0.23 TCGA-49-6743-01 1 46739098 46739098 C A RAD54L Missense_Mutation p.P483T 0.07 tolerated(0.12) benign(0.007) TCGA-49-6743-01 1 51871621 51871621 C A EPS15 Missense_Mutation p.G545C 0.15 tolerated(0.06) benign(0.004) TCGA-49-6743-01 1 53287252 53287252 A G ZYG11B Missense_Mutation p.H729R 0.31 tolerated(0.06) benign(0.266) TCGA-49-6743-01 1 57499077 57499077 C G DAB1 Intron 0.11 TCGA-49-6743-01 1 5993291 5993291 G A NPHP4 Silent p.T406T 0.10 TCGA-49-6743-01 1 62257095 62257095 G T INADL Missense_Mutation p.G382C 0.20 deleterious(0) probably_damaging(0.994) TCGA-49-6743-01 1 62257096 62257096 G T INADL Missense_Mutation p.G382V 0.20 deleterious(0) probably_damaging(0.965) TCGA-49-6743-01 1 63789535 63789535 G T FOXD3 Missense_Mutation p.G269V 0.27 deleterious(0.02) unknown(0) TCGA-49-6743-01 1 6528571 6528571 G A PLEKHG5 Silent p.F854F 0.14 TCGA-49-6743-01 1 6585875 6585875 C T NOL9 3'UTR 0.06 TCGA-49-6743-01 1 67833639 67833639 G A IL12RB2 Missense_Mutation p.G464R 0.21 tolerated(0.41) benign(0.008) TCGA-49-6743-01 1 68895585 68895585 G T RPE65 Missense_Mutation p.S492R 0.14 deleterious(0) possibly_damaging(0.793) TCGA-49-6743-01 1 70820143 70820143 G C ANKRD13C 5'UTR 0.20 TCGA-49-6743-01 1 71512608 71512608 C A PTGER3 Missense_Mutation p.G218V 0.12 deleterious(0.02) possibly_damaging(0.752) TCGA-49-6743-01 1 74954902 74954902 G A TNNI3K Missense_Mutation p.M818I 0.07 tolerated(0.2) benign(0) TCGA-49-6743-01 1 75685015 75685015 G T SLC44A5 Nonsense_Mutation p.S398* 0.09 TCGA-49-6743-01 1 78959094 78959094 C A PTGFR Silent p.I222I 0.08 TCGA-49-6743-01 1 79401979 79401979 C A ELTD1 Splice_Site p.X293_splice 0.11 TCGA-49-6743-01 1 7995187 7995187 T A TNFRSF9 Nonsense_Mutation p.K144* 0.13 TCGA-49-6743-01 1 86590639 86590639 G A COL24A1 Silent p.P460P 0.12 TCGA-49-6743-01 1 93170110 93170110 A G EVI5 Splice_Site p.X157_splice 0.23 TCGA-49-6743-01 1 93306380 93306380 G A RPL5 Intron 0.08 TCGA-49-6743-01 1 94667361 94667361 C G ARHGAP29 Missense_Mutation p.R399T 0.15 deleterious(0) possibly_damaging(0.632) TCGA-49-6743-01 20 11903589 11903589 G A BTBD3 Missense_Mutation p.E282K 0.11 deleterious(0) probably_damaging(0.996) TCGA-49-6743-01 20 13845825 13845825 C A SEL1L2 Missense_Mutation p.E489D 0.12 tolerated_low_confidence(0.32) benign(0.101) TCGA-49-6743-01 20 1459098 1459098 C A SIRPB2 Missense_Mutation p.E202D 0.14 deleterious(0.01) probably_damaging(0.99) TCGA-49-6743-01 20 1546816 1546816 C A SIRPB1 Missense_Mutation p.W394C 0.15 deleterious(0) possibly_damaging(0.628) TCGA-49-6743-01 20 2376003 2376003 C G TGM6 Missense_Mutation p.S115R 0.06 tolerated(0.07) benign(0.03) TCGA-49-6743-01 20 2776473 2776473 G T CPXM1 Missense_Mutation p.H498N 0.21 tolerated(0.1) possibly_damaging(0.708) TCGA-49-6743-01 20 2777180 2777180 A C CPXM1 Missense_Mutation p.H346Q 0.13 deleterious(0) probably_damaging(1) TCGA-49-6743-01 20 30585071 30585071 G C XKR7 Silent p.R517R 0.08 TCGA-49-6743-01 20 31757084 31757084 G C BPIFA2 Missense_Mutation p.E45Q 0.11 tolerated(0.09) benign(0.07) TCGA-49-6743-01 20 35929811 35929811 G A MANBAL Missense_Mutation p.E49K 0.19 tolerated(0.32) possibly_damaging(0.893) TCGA-49-6743-01 20 43883108 43883108 G C SLPI Missense_Mutation p.S26C 0.18 deleterious(0.01) possibly_damaging(0.474) TCGA-49-6743-01 20 44049033 44049033 G C PIGT Missense_Mutation p.E277D 0.17 tolerated(0.48) benign(0.314) TCGA-49-6743-01 20 50405400 50405400 C A SALL4 Missense_Mutation p.K914N 0.10 deleterious(0) probably_damaging(0.999) TCGA-49-6743-01 20 50769144 50769144 C T ZFP64 Silent p.Q529Q 0.13 TCGA-49-6743-01 20 55020975 55020975 G T CASS4 Missense_Mutation p.R160I 0.27 deleterious(0) possibly_damaging(0.866) TCGA-49-6743-01 20 60499411 60499411 C A CDH4 Missense_Mutation p.P550T 0.20 tolerated(0.13) possibly_damaging(0.783) TCGA-49-6743-01 20 62121997 62121997 C A EEF1A2 Missense_Mutation p.E288D 0.14 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-49-6743-01 20 629273 629273 C T RP5-850E9.3 3'UTR 0.27 TCGA-49-6743-01 20 6759010 6759010 A G BMP2 Silent p.E155E 0.11 TCGA-49-6743-01 20 745853 745853 T A SLC52A3 Missense_Mutation p.Q189L 0.14 tolerated(0.21) benign(0.256) TCGA-49-6743-01 20 7886947 7886947 G C HAO1 Nonsense_Mutation p.S192* 0.07 TCGA-49-6743-01 21 19647584 19647584 A T TMPRSS15 Missense_Mutation p.M945K 0.22 deleterious(0) possibly_damaging(0.587) TCGA-49-6743-01 21 30302726 30302726 C G LTN1 3'UTR 0.18 TCGA-49-6743-01 21 31654988 31654988 G - KRTAP24-1 Frame_Shift_Del p.P88Rfs*78 0.24 TCGA-49-6743-01 21 31986077 31986077 A G KRTAP6-1 Silent p.Y49Y 0.23 TCGA-49-6743-01 21 32185344 32185344 C G KRTAP8-1 3'UTR 0.13 TCGA-49-6743-01 21 35255959 35255959 G A ITSN1 Missense_Mutation p.E1554K 0.08 tolerated(0.09) benign(0.086) TCGA-49-6743-01 21 40778136 40778136 C G LCA5L Missense_Mutation p.R562T 0.07 tolerated(1) benign(0.004) TCGA-49-6743-01 21 42598273 42598273 C A BACE2 Missense_Mutation p.D131E 0.17 tolerated(0.47) benign(0.006) TCGA-49-6743-01 21 44521481 44521481 G A U2AF1 Intron 0.22 TCGA-49-6743-01 21 45736374 45736374 G C PFKL Silent p.R301R 0.13 TCGA-49-6743-01 21 45978229 45978229 A T KRTAP10-3 Missense_Mutation p.C124S 0.19 tolerated(0.07) unknown(0) TCGA-49-6743-01 21 46117901 46117901 C A KRTAP10-12 3'UTR 0.10 TCGA-49-6743-01 21 47548967 47548967 C A COL6A2 Intron 0.17 TCGA-49-6743-01 22 19127517 19127517 C T DGCR14 Missense_Mutation p.E141K 0.08 tolerated(0.7) benign(0.008) TCGA-49-6743-01 22 19707369 19707369 C T SEPT5 Silent p.L64L 0.18 TCGA-49-6743-01 22 22516926 22516926 G C IGLV4-60 Missense_Mutation p.E72Q 0.15 tolerated(0.52) benign(0.009) TCGA-49-6743-01 22 22556531 22556531 C T IGLV11-55 Silent p.C115C 0.18 TCGA-49-6743-01 22 24086231 24086231 C T ZNF70 Missense_Mutation p.C366Y 0.22 deleterious(0) probably_damaging(1) TCGA-49-6743-01 22 26168354 26168354 C T MYO18B Silent p.V582V 0.17 TCGA-49-6743-01 22 30887627 30887627 G A SEC14L4 Silent p.P338P 0.20 TCGA-49-6743-01 22 32477866 32477866 C A SLC5A1 Nonsense_Mutation p.S164* 0.18 TCGA-49-6743-01 22 37334173 37334173 C A CSF2RB Silent p.R775R 0.18 TCGA-49-6743-01 22 38026076 38026076 G T GGA1 Silent p.A410A 0.25 TCGA-49-6743-01 22 38698909 38698909 C T CSNK1E Missense_Mutation p.R98H 0.20 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-49-6743-01 22 39262858 39262858 G T CBX6 Missense_Mutation p.R199S 0.23 deleterious(0) benign(0.223) TCGA-49-6743-01 22 42084837 42084837 C T NHP2L1 5'UTR 0.14 TCGA-49-6743-01 22 44368860 44368860 G T SAMM50 Missense_Mutation p.R180L 0.19 tolerated(1) benign(0) TCGA-49-6743-01 22 44692577 44692577 C G KIAA1644 Missense_Mutation p.A86P 0.21 deleterious(0.03) benign(0.059) TCGA-49-6743-01 22 46594329 46594329 G - PPARA Frame_Shift_Del p.G17Afs*3 0.09 TCGA-49-6743-01 22 47433074 47433074 C T TBC1D22A Missense_Mutation p.R437C 0.11 deleterious(0) probably_damaging(1) TCGA-49-6743-01 22 50320944 50320944 G A CRELD2 Missense_Mutation p.E400K 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-49-6743-01 22 50515285 50515285 G T MLC1 Silent p.V194V 0.17 TCGA-49-6743-01 22 50572981 50572981 T G MOV10L1 Missense_Mutation p.I664M 0.13 tolerated(0.06) possibly_damaging(0.535) TCGA-49-6743-01 22 50727191 50727191 T G PLXNB2 Missense_Mutation p.Y454S 0.26 deleterious(0) probably_damaging(0.999) TCGA-49-6743-01 2 128072409 128072409 C A MAP3K2 Silent p.V459V 0.17 TCGA-49-6743-01 2 128179008 128179008 C T PROC Nonsense_Mutation p.Q74* 0.11 TCGA-49-6743-01 2 128339977 128339977 C G MYO7B Missense_Mutation p.I433M 0.17 deleterious(0.01) probably_damaging(0.941) TCGA-49-6743-01 2 12858385 12858385 A G TRIB2 5'UTR 0.16 TCGA-49-6743-01 2 132287351 132287351 C T CCDC74A Intron 0.12 TCGA-49-6743-01 2 133721292 133721292 C A NCKAP5 Splice_Site p.X193_splice 0.08 TCGA-49-6743-01 2 135744471 135744471 A T MAP3K19 Silent p.A657A 0.10 TCGA-49-6743-01 2 136575357 136575357 C T LCT Missense_Mutation p.E421K 0.09 tolerated(0.94) benign(0.002) TCGA-49-6743-01 2 141115561 141115561 T C LRP1B Silent p.Q3794Q 0.15 TCGA-49-6743-01 2 141819801 141819801 T C LRP1B Missense_Mutation p.E352G 0.25 benign(0.403) TCGA-49-6743-01 2 141986830 141986830 G C LRP1B Missense_Mutation p.Q258E 0.21 benign(0) TCGA-49-6743-01 2 152522680 152522680 G A NEB Missense_Mutation p.S1652L 0.21 benign(0.002) TCGA-49-6743-01 2 160303412 160303412 C T BAZ2B Missense_Mutation p.A193T 0.12 possibly_damaging(0.483) TCGA-49-6743-01 2 166852589 166852589 C T SCN1A Silent p.K1505K 0.08 TCGA-49-6743-01 2 169830280 169830280 C - ABCB11 Frame_Shift_Del p.G460Efs*20 0.15 TCGA-49-6743-01 2 170374795 170374795 C T KLHL41 Missense_Mutation p.A491V 0.10 tolerated(0.69) benign(0.09) TCGA-49-6743-01 2 170493776 170493776 G C PPIG Missense_Mutation p.D670H 0.09 deleterious_low_confidence(0) unknown(0) TCGA-49-6743-01 2 173881122 173881122 C A RAPGEF4 Missense_Mutation p.L619I 0.16 tolerated(0.05) benign(0.341) TCGA-49-6743-01 2 174231037 174231037 G A CDCA7 Silent p.Q354Q 0.12 TCGA-49-6743-01 2 174820676 174820676 G C SP3 Missense_Mutation p.F188L 0.10 tolerated(0.11) possibly_damaging(0.878) TCGA-49-6743-01 2 175260535 175260535 T G SCRN3 5'UTR 0.25 TCGA-49-6743-01 2 175673684 175673684 G T CHN1 Missense_Mutation p.P351T 0.12 deleterious(0) possibly_damaging(0.481) TCGA-49-6743-01 2 17697556 17697556 C G RAD51AP2 Missense_Mutation p.Q709H 0.19 deleterious(0.05) benign(0.006) TCGA-49-6743-01 2 179407655 179407655 G C TTN Missense_Mutation p.S32309C 0.08 TCGA-49-6743-01 2 179441371 179441371 T A TTN Missense_Mutation p.K23200N 0.22 TCGA-49-6743-01 2 179475105 179475105 G A TTN Missense_Mutation p.P17050S 0.16 TCGA-49-6743-01 2 179616095 179616095 C T TTN Intron 0.19 TCGA-49-6743-01 2 182794429 182794429 A C SSFA2 3'UTR 0.26 TCGA-49-6743-01 2 183095846 183095846 A G PDE1A Missense_Mutation p.W160R 0.08 deleterious(0) probably_damaging(1) TCGA-49-6743-01 2 192278789 192278789 C G MYO1B Missense_Mutation p.F963L 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-49-6743-01 2 1926275 1926275 C A MYT1L Missense_Mutation p.E422D 0.17 tolerated(0.25) possibly_damaging(0.755) TCGA-49-6743-01 2 197184360 197184360 A T HECW2 Missense_Mutation p.D418E 0.15 tolerated_low_confidence(0.28) benign(0.081) TCGA-49-6743-01 2 197189755 197189755 C G HECW2 Missense_Mutation p.E230D 0.27 deleterious(0.05) probably_damaging(0.994) TCGA-49-6743-01 2 197637761 197637761 C G GTF3C3 Missense_Mutation p.D650H 0.15 tolerated(0.1) possibly_damaging(0.811) TCGA-49-6743-01 2 198363449 198363449 G T HSPD1 Missense_Mutation p.Q42K 0.10 tolerated(0.56) benign(0.014) TCGA-49-6743-01 2 201400787 201400787 G C SGOL2 Splice_Site p.X104_splice 0.16 TCGA-49-6743-01 2 201437658 201437658 A T SGOL2 Missense_Mutation p.Q863H 0.10 tolerated(0.08) benign(0.066) TCGA-49-6743-01 2 206988867 206988867 C T NDUFS1 3'UTR 0.19 TCGA-49-6743-01 2 207407978 207407978 G C ADAM23 Missense_Mutation p.G220R 0.12 deleterious(0) probably_damaging(1) TCGA-49-6743-01 2 21250752 21250752 A T APOB Missense_Mutation p.M672K 0.15 possibly_damaging(0.673) TCGA-49-6743-01 2 215821468 215821468 C A ABCA12 Missense_Mutation p.G2051V 0.17 tolerated(0.07) probably_damaging(0.997) TCGA-49-6743-01 2 220032665 220032665 C A SLC23A3 Missense_Mutation p.W308C 0.06 deleterious(0.02) probably_damaging(0.957) TCGA-49-6743-01 2 228012221 228012221 A - COL4A4 5'UTR 0.11 TCGA-49-6743-01 2 231090527 231090527 A T SP140 5'UTR 0.23 TCGA-49-6743-01 2 231359144 231359144 G T SP100 Missense_Mutation p.R538S 0.09 tolerated(0.31) benign(0.008) TCGA-49-6743-01 2 232576100 232576100 G A PTMA Missense_Mutation p.G30R 0.09 deleterious(0.01) unknown(0) TCGA-49-6743-01 2 233272331 233272331 G A ALPPL2 Missense_Mutation p.D110N 0.21 deleterious(0) probably_damaging(0.999) TCGA-49-6743-01 2 240969745 240969745 G T OR6B2 Silent p.T34T 0.10 TCGA-49-6743-01 2 240984557 240984557 G T OR6B3 Silent p.A311A 0.24 TCGA-49-6743-01 2 242179037 242179037 G A HDLBP Nonsense_Mutation p.Q864* 0.16 TCGA-49-6743-01 2 242441097 242441097 G C STK25 Silent p.L19L 0.15 TCGA-49-6743-01 2 24261839 24261839 C G C2orf44 Missense_Mutation p.G176R 0.21 deleterious(0) probably_damaging(0.993) TCGA-49-6743-01 2 242695292 242695292 C A D2HGDH Missense_Mutation p.T390K 0.08 deleterious(0.03) benign(0.392) TCGA-49-6743-01 2 27302068 27302068 G T EMILIN1 Missense_Mutation p.Q45H 0.24 possibly_damaging(0.838) TCGA-49-6743-01 2 27302069 27302069 G T EMILIN1 Missense_Mutation p.A46S 0.23 benign(0.146) TCGA-49-6743-01 2 32477605 32477605 C T NLRC4 Missense_Mutation p.D49N 0.14 deleterious(0.01) possibly_damaging(0.886) TCGA-49-6743-01 2 3685139 3685139 A G COLEC11 Silent p.K87K 0.17 TCGA-49-6743-01 2 37347280 37347280 G A EIF2AK2 Missense_Mutation p.S357L 0.17 tolerated(0.31) benign(0.007) TCGA-49-6743-01 2 43939499 43939499 A C PLEKHH2 Missense_Mutation p.T813P 0.15 deleterious(0.01) benign(0.299) TCGA-49-6743-01 2 45620234 45620234 C A SRBD1 Missense_Mutation p.V850F 0.16 deleterious(0.03) benign(0.056) TCGA-49-6743-01 2 50282182 50282182 C - NRXN1 Frame_Shift_Del p.G1280Efs*22 0.38 TCGA-49-6743-01 2 50692672 50692672 G A NRXN1 Missense_Mutation p.S1131L 0.08 deleterious(0.02) probably_damaging(0.99) TCGA-49-6743-01 2 74146569 74146569 C A ACTG2 Missense_Mutation p.P333H 0.20 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-49-6743-01 2 77746563 77746563 C A LRRTM4 Missense_Mutation p.K144N 0.20 tolerated(0.14) probably_damaging(0.999) TCGA-49-6743-01 2 79253844 79253844 G T REG3G Nonsense_Mutation p.E28* 0.16 TCGA-49-6743-01 2 79254247 79254247 A T REG3G Missense_Mutation p.I95F 0.15 tolerated(0.26) benign(0.248) TCGA-49-6743-01 2 80530456 80530456 G A LRRTM1 Silent p.L163L 0.19 TCGA-49-6743-01 2 89197009 89197009 C A IGKV5-2 Silent p.T18T 0.34 TCGA-49-6743-01 2 90108925 90108925 C A IGKV6D-41 Missense_Mutation p.P64T 0.14 deleterious(0) possibly_damaging(0.839) TCGA-49-6743-01 2 99226378 99226378 G A UNC50 Silent p.Q52Q 0.08 TCGA-49-6743-01 3 101283965 101283965 G A TRMT10C Missense_Mutation p.E114K 0.12 deleterious(0) probably_damaging(0.928) TCGA-49-6743-01 3 105400710 105400710 T A CBLB Intron 0.19 TCGA-49-6743-01 3 108095379 108095379 C T HHLA2 Missense_Mutation p.A400V 0.26 tolerated_low_confidence(0.1) benign(0.064) TCGA-49-6743-01 3 112277264 112277264 C G ATG3 Missense_Mutation p.E25Q 0.04 deleterious(0.01) probably_damaging(0.98) TCGA-49-6743-01 3 113172643 113172643 C A SPICE1 Missense_Mutation p.W604C 0.20 tolerated(0.1) probably_damaging(1) TCGA-49-6743-01 3 113775342 113775342 A G KIAA1407 5'UTR 0.20 TCGA-49-6743-01 3 115560780 115560780 C T LSAMP Silent p.V277V 0.09 TCGA-49-6743-01 3 119373414 119373414 A G POPDC2 Missense_Mutation p.Y180H 0.19 tolerated(0.28) benign(0.081) TCGA-49-6743-01 3 121396161 121396161 G A GOLGB1 Nonsense_Mutation p.Q3004* 0.14 TCGA-49-6743-01 3 128356927 128356927 C T RPN1 Silent p.K116K 0.25 TCGA-49-6743-01 3 128780876 128780876 C G GP9 Silent p.L98L 0.10 TCGA-49-6743-01 3 130284021 130284021 C G COL6A6 Nonsense_Mutation p.S282* 0.23 TCGA-49-6743-01 3 134898724 134898724 C G EPHB1 Nonsense_Mutation p.Y594* 0.17 TCGA-49-6743-01 3 134920429 134920429 G T EPHB1 Missense_Mutation p.R748S 0.18 deleterious(0) probably_damaging(0.947) TCGA-49-6743-01 3 138739045 138739045 C T PRR23B Silent p.E153E 0.23 TCGA-49-6743-01 3 140122600 140122600 C A CLSTN2 Missense_Mutation p.T121K 0.17 tolerated(0.18) benign(0.095) TCGA-49-6743-01 3 140251183 140251183 G T CLSTN2 Missense_Mutation p.W454C 0.11 deleterious(0) probably_damaging(1) TCGA-49-6743-01 3 142537261 142537261 G T PCOLCE2 Silent p.G388G 0.22 TCGA-49-6743-01 3 142731083 142731083 C T U2SURP Missense_Mutation p.S37L 0.08 tolerated_low_confidence(0.29) benign(0) TCGA-49-6743-01 3 147114217 147114217 G C ZIC4 Missense_Mutation p.A87G 0.27 tolerated(0.14) benign(0.076) TCGA-49-6743-01 3 148459409 148459409 G T AGTR1 Missense_Mutation p.G196V 0.23 deleterious(0.02) possibly_damaging(0.827) TCGA-49-6743-01 3 148904392 148904392 T C CP Silent p.T664T 0.06 TCGA-49-6743-01 3 150877616 150877616 C G MED12L Intron 0.08 TCGA-49-6743-01 3 155212152 155212152 G A PLCH1 Silent p.P671P 0.18 TCGA-49-6743-01 3 158980621 158980621 G C IQCJ Intron 0.33 TCGA-49-6743-01 3 164786959 164786959 A T SI Missense_Mutation p.C94S 0.08 deleterious(0) probably_damaging(0.917) TCGA-49-6743-01 3 167246938 167246938 G C WDR49 Missense_Mutation p.H418D 0.22 deleterious(0) possibly_damaging(0.747) TCGA-49-6743-01 3 169656278 169656278 G A SAMD7 Missense_Mutation p.G442D 0.11 tolerated(1) benign(0) TCGA-49-6743-01 3 174974218 174974218 A T NAALADL2 Missense_Mutation p.S280C 0.14 tolerated(0.05) possibly_damaging(0.619) TCGA-49-6743-01 3 175184908 175184908 C G NAALADL2 Missense_Mutation p.T490S 0.25 tolerated(0.06) benign(0.225) TCGA-49-6743-01 3 178560609 178560609 C A KCNMB2 Missense_Mutation p.H198N 0.30 deleterious(0.01) probably_damaging(0.992) TCGA-49-6743-01 3 178916645 178916645 G T PIK3CA Missense_Mutation p.W11L 0.25 deleterious(0) probably_damaging(0.999) TCGA-49-6743-01 3 180378429 180378429 C T CCDC39 Missense_Mutation p.E149K 0.23 deleterious(0.02) possibly_damaging(0.835) TCGA-49-6743-01 3 186459875 186459875 C A KNG1 Missense_Mutation p.Q564K 0.21 tolerated(0.09) benign(0.122) TCGA-49-6743-01 3 193156355 193156355 C T ATP13A4 Missense_Mutation p.V861M 0.14 deleterious(0) possibly_damaging(0.479) TCGA-49-6743-01 3 193201780 193201780 G A ATP13A4 Silent p.L251L 0.07 TCGA-49-6743-01 3 193360615 193360615 A T OPA1 Missense_Mutation p.D386V 0.07 deleterious(0) probably_damaging(0.995) TCGA-49-6743-01 3 195498653 195498653 G C MUC4 Nonsense_Mutation p.S4371* 0.10 TCGA-49-6743-01 3 32180188 32180188 C T GPD1L Missense_Mutation p.P112L 0.31 tolerated(0.07) benign(0.003) TCGA-49-6743-01 3 38913093 38913093 G - SCN11A Frame_Shift_Del p.S1201Lfs*15 0.19 TCGA-49-6743-01 3 46480816 46480816 G A LTF Missense_Mutation p.R627C 0.27 tolerated(0.2) possibly_damaging(0.537) TCGA-49-6743-01 3 49135440 49135440 G A QARS Silent p.D754D 0.10 TCGA-49-6743-01 3 51400009 51400009 C T DOCK3 Silent p.L1733L 0.28 TCGA-49-6743-01 3 52366232 52366232 A G DNAH1 Missense_Mutation p.M370V 0.37 benign(0) TCGA-49-6743-01 3 58178974 58178974 T A DNASE1L3 Intron 0.29 TCGA-49-6743-01 3 62423881 62423881 G T CADPS Silent p.P1225P 0.10 TCGA-49-6743-01 3 74548836 74548836 T G CNTN3 Silent p.A52A 0.22 TCGA-49-6743-01 3 8809147 8809147 C A OXTR Missense_Mutation p.A243S 0.25 tolerated(0.58) benign(0.012) TCGA-49-6743-01 3 97852089 97852089 C A OR5H1 Missense_Mutation p.P183Q 0.09 tolerated(0.22) probably_damaging(0.927) TCGA-49-6743-01 4 10079394 10079394 C T WDR1 Missense_Mutation p.V518I 0.27 tolerated(0.11) benign(0.027) TCGA-49-6743-01 4 104081905 104081905 C G CENPE Missense_Mutation p.K721N 0.13 benign(0.07) TCGA-49-6743-01 4 123128714 123128714 G A KIAA1109 Missense_Mutation p.G558E 0.18 probably_damaging(1) TCGA-49-6743-01 4 159631959 159631959 G A PPID Silent p.R312R 0.17 TCGA-49-6743-01 4 247450 247450 A T ZNF876P RNA 0.25 TCGA-49-6743-01 4 26483223 26483223 C A CCKAR 3'UTR 0.25 TCGA-49-6743-01 4 41984848 41984848 C T DCAF4L1 Missense_Mutation p.H347Y 0.18 tolerated(0.35) benign(0.013) TCGA-49-6743-01 4 44683138 44683138 A T GUF1 Splice_Site p.X143_splice 0.15 TCGA-49-6743-01 4 48852087 48852087 C G OCIAD1 Missense_Mutation p.S122C 0.06 tolerated(0.19) benign(0.289) TCGA-49-6743-01 4 49006003 49006003 C T CWH43 Missense_Mutation p.L352F 0.17 deleterious(0.01) probably_damaging(0.984) TCGA-49-6743-01 4 54966627 54966627 C A GSX2 Missense_Mutation p.P39H 0.20 tolerated(0.07) benign(0.002) TCGA-49-6743-01 4 65274987 65274987 T C TECRL Missense_Mutation p.D28G 0.12 deleterious_low_confidence(0.01) benign(0.013) TCGA-49-6743-01 4 66217268 66217268 C G EPHA5 Missense_Mutation p.G783R 0.17 deleterious(0) probably_damaging(1) TCGA-49-6743-01 4 68725318 68725318 G T TMPRSS11D Silent p.I29I 0.23 TCGA-49-6743-01 4 68956360 68956360 C A TMPRSS11F Splice_Site p.X55_splice 0.23 TCGA-49-6743-01 4 84374582 84374582 C G HELQ Missense_Mutation p.A272P 0.20 deleterious(0.03) benign(0.445) TCGA-49-6743-01 4 85656259 85656259 C T WDFY3 Nonsense_Mutation p.W2310* 0.23 TCGA-49-6743-01 4 89383387 89383387 G C HERC5 Missense_Mutation p.G190R 0.16 deleterious(0) probably_damaging(1) TCGA-49-6743-01 5 114961405 114961405 G C TMED7-TICAM2 Missense_Mutation p.P29A 0.20 tolerated_low_confidence(0.52) benign(0.001) TCGA-49-6743-01 5 115782711 115782711 C G SEMA6A Missense_Mutation p.Q897H 0.13 deleterious(0.03) probably_damaging(0.993) TCGA-49-6743-01 5 130843796 130843796 C A RAPGEF6 Missense_Mutation p.A304S 0.21 tolerated(0.06) possibly_damaging(0.567) TCGA-49-6743-01 5 137424687 137424687 G T WNT8A Missense_Mutation p.V147L 0.27 tolerated(0.29) benign(0.142) TCGA-49-6743-01 5 138762004 138762004 C G DNAJC18 Missense_Mutation p.R139T 0.10 deleterious(0) probably_damaging(0.991) TCGA-49-6743-01 5 140228185 140228185 C - PCDHA9 Frame_Shift_Del p.P36Rfs*42 0.17 TCGA-49-6743-01 5 140307901 140307901 G T PCDHAC1 Missense_Mutation p.G475V 0.29 deleterious(0.01) probably_damaging(0.946) TCGA-49-6743-01 5 140432666 140432666 G T PCDHB1 Silent p.G537G 0.25 TCGA-49-6743-01 5 140552601 140552601 G A PCDHB7 Missense_Mutation p.R62Q 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.826) TCGA-49-6743-01 5 141028826 141028826 C A FCHSD1 Missense_Mutation p.R142L 0.32 deleterious(0) possibly_damaging(0.663) TCGA-49-6743-01 5 14287164 14287164 G A TRIO Missense_Mutation p.E178K 0.09 probably_damaging(0.968) TCGA-49-6743-01 5 145463988 145463988 C G PLAC8L1 3'UTR 0.13 TCGA-49-6743-01 5 145849157 145849157 G C TCERG1 Missense_Mutation p.V417L 0.23 tolerated(0.33) unknown(0) TCGA-49-6743-01 5 147807317 147807317 G T FBXO38 Intron 0.12 TCGA-49-6743-01 5 150922767 150922767 C A FAT2 Missense_Mutation p.G2641C 0.22 probably_damaging(1) TCGA-49-6743-01 5 153765889 153765889 G T GALNT10 Missense_Mutation p.G319C 0.23 deleterious(0) probably_damaging(1) TCGA-49-6743-01 5 156533888 156533888 G T HAVCR2 Silent p.L48L 0.12 TCGA-49-6743-01 5 175110494 175110494 T A HRH2 Missense_Mutation p.F86L 0.21 tolerated(0.29) benign(0.174) TCGA-49-6743-01 5 175110497 175110497 C G HRH2 Silent p.G87G 0.23 TCGA-49-6743-01 5 19839061 19839061 A G CDH18 Missense_Mutation p.V12A 0.19 tolerated(0.37) benign(0.074) TCGA-49-6743-01 5 23527596 23527596 G T PRDM9 Missense_Mutation p.G800V 0.18 deleterious(0.01) unknown(0) TCGA-49-6743-01 5 24511461 24511462 TG - CDH10 Frame_Shift_Del p.Q326Gfs*13 0.23 TCGA-49-6743-01 5 24593655 24593655 C A CDH10 5'UTR 0.53 TCGA-49-6743-01 5 26890652 26890652 A T CDH9 Silent p.T425T 0.34 TCGA-49-6743-01 5 26906090 26906090 G T CDH9 Missense_Mutation p.N263K 0.24 deleterious(0) benign(0.058) TCGA-49-6743-01 5 31504659 31504659 T A DROSHA Intron 0.17 TCGA-49-6743-01 5 31538638 31538638 G A C5orf22 Missense_Mutation p.E217K 0.37 tolerated(0.31) benign(0.063) TCGA-49-6743-01 5 33561167 33561167 G A ADAMTS12 Missense_Mutation p.P1364S 0.19 deleterious(0.01) probably_damaging(1) TCGA-49-6743-01 5 33576822 33576822 C T ADAMTS12 Silent p.E1103E 0.34 TCGA-49-6743-01 5 33881488 33881488 G A ADAMTS12 Silent p.I75I 0.38 TCGA-49-6743-01 5 33947472 33947472 C G SLC45A2 Missense_Mutation p.Q388H 0.12 deleterious(0.02) benign(0.151) TCGA-49-6743-01 5 35654782 35654782 G - SPEF2 Frame_Shift_Del p.R312Gfs*4 0.15 TCGA-49-6743-01 5 35871201 35871201 A G IL7R Silent p.E141E 0.41 TCGA-49-6743-01 5 40998210 40998210 C T MROH2B Missense_Mutation p.E1568K 0.05 tolerated(0.13) benign(0.005) TCGA-49-6743-01 5 40999828 40999828 G C MROH2B Missense_Mutation p.F1512L 0.06 deleterious(0.01) possibly_damaging(0.73) TCGA-49-6743-01 5 43277259 43277259 C A NIM1K Silent p.P131P 0.21 TCGA-49-6743-01 5 45262210 45262210 G T HCN1 Missense_Mutation p.A829E 0.38 tolerated_low_confidence(0.1) benign(0.027) TCGA-49-6743-01 5 52211397 52211397 G T ITGA1 Missense_Mutation p.G654V 0.11 deleterious(0) probably_damaging(0.967) TCGA-49-6743-01 5 63509778 63509778 C G RNF180 Missense_Mutation p.L209V 0.06 tolerated(0.06) benign(0.006) TCGA-49-6743-01 5 66458488 66458488 C T MAST4 Missense_Mutation p.T1280I 0.09 probably_damaging(0.998) TCGA-49-6743-01 5 67588928 67588928 G T PIK3R1 Splice_Site p.X340_splice 0.19 TCGA-49-6743-01 5 74325326 74325326 T A GCNT4 Missense_Mutation p.L179F 0.29 deleterious(0.01) probably_damaging(0.987) TCGA-49-6743-01 5 74990568 74990568 G C POC5 Missense_Mutation p.A201G 0.16 deleterious(0) benign(0.005) TCGA-49-6743-01 5 7724707 7724707 A T ADCY2 Missense_Mutation p.N585Y 0.12 deleterious(0) probably_damaging(0.989) TCGA-49-6743-01 5 82789668 82789668 G T VCAN Missense_Mutation p.M222I 0.14 deleterious(0) possibly_damaging(0.655) TCGA-49-6743-01 5 89781468 89781468 T C POLR3G Silent p.P28P 0.17 TCGA-49-6743-01 5 90052969 90052969 A T GPR98 Silent p.A3977A 0.15 TCGA-49-6743-01 5 9044500 9044500 C A SEMA5A Silent p.S1030S 0.18 TCGA-49-6743-01 6 108497812 108497812 C T NR2E1 Missense_Mutation p.S122L 0.10 tolerated(0.12) benign(0.163) TCGA-49-6743-01 6 108499305 108499305 C G NR2E1 Missense_Mutation p.H168D 0.27 deleterious(0.03) benign(0.009) TCGA-49-6743-01 6 10911082 10911082 G T SYCP2L Missense_Mutation p.A300S 0.05 deleterious(0) probably_damaging(0.999) TCGA-49-6743-01 6 110113828 110113828 C G FIG4 Nonsense_Mutation p.S807* 0.12 TCGA-49-6743-01 6 111632432 111632432 C G REV3L Missense_Mutation p.E2879Q 0.10 deleterious(0.01) probably_damaging(0.984) TCGA-49-6743-01 6 111701255 111701255 C T REV3L Missense_Mutation p.E462K 0.09 deleterious(0) possibly_damaging(0.796) TCGA-49-6743-01 6 112466086 112466086 C A LAMA4 Silent p.T801T 0.20 TCGA-49-6743-01 6 117681505 117681505 C T ROS1 Missense_Mutation p.E1149K 0.08 tolerated(0.1) benign(0.075) TCGA-49-6743-01 6 118953648 118953648 C A CEP85L Missense_Mutation p.G70V 0.10 deleterious(0) probably_damaging(1) TCGA-49-6743-01 6 12122086 12122086 G T HIVEP1 Silent p.V686V 0.19 TCGA-49-6743-01 6 121768044 121768044 C T GJA1 Silent p.Y17Y 0.10 TCGA-49-6743-01 6 124125384 124125384 C G NKAIN2 Missense_Mutation p.I13M 0.13 deleterious(0.01) benign(0.059) TCGA-49-6743-01 6 125144452 125144452 G C NKAIN2 3'UTR 0.23 TCGA-49-6743-01 6 132168987 132168987 A T ENPP1 Missense_Mutation p.E104D 0.12 tolerated(0.3) benign(0.123) TCGA-49-6743-01 6 132966315 132966315 A T TAAR1 Missense_Mutation p.F276L 0.24 deleterious(0.03) benign(0.405) TCGA-49-6743-01 6 133004445 133004445 C T VNN1 Missense_Mutation p.R459H 0.08 tolerated(0.19) probably_damaging(0.912) TCGA-49-6743-01 6 133783490 133783490 T A EYA4 Missense_Mutation p.L152H 0.08 deleterious(0) probably_damaging(1) TCGA-49-6743-01 6 144508051 144508051 G T STX11 Missense_Mutation p.R96L 0.22 deleterious(0) probably_damaging(0.995) TCGA-49-6743-01 6 149982847 149982847 C A LATS1 3'UTR 0.14 TCGA-49-6743-01 6 151626887 151626887 A G AKAP12 Silent p.L56L 0.20 TCGA-49-6743-01 6 152780042 152780045 GAGT AGG SYNE1 Frame_Shift_Del p.L807Ffs*8 0.16 TCGA-49-6743-01 6 152832221 152832221 A G SYNE1 Silent p.I109I 0.25 TCGA-49-6743-01 6 15501359 15501359 G C JARID2 Missense_Mutation p.V723L 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-49-6743-01 6 157529010 157529010 G C ARID1B Missense_Mutation p.Q2245H 0.11 probably_damaging(0.995) TCGA-49-6743-01 6 16295298 16295298 G C GMPR Missense_Mutation p.D307H 0.13 deleterious(0) probably_damaging(0.99) TCGA-49-6743-01 6 165809841 165809841 G A PDE10A Silent p.F462F 0.22 TCGA-49-6743-01 6 167344531 167344531 C A RNASET2 Splice_Site p.X189_splice 0.17 TCGA-49-6743-01 6 167570787 167570787 T A GPR31 Missense_Mutation p.Q178L 0.30 deleterious(0.04) benign(0.063) TCGA-49-6743-01 6 169637359 169637359 G A THBS2 Silent p.I461I 0.15 TCGA-49-6743-01 6 170179308 170179308 G A ERMARD Silent p.L590L 0.09 TCGA-49-6743-01 6 18122334 18122334 C T NHLRC1 Silent p.G168G 0.09 TCGA-49-6743-01 6 27775547 27775547 C G HIST1H2BL Silent p.L46L 0.11 TCGA-49-6743-01 6 27806822 27806822 C A HIST1H2BN 3'UTR 0.16 TCGA-49-6743-01 6 29408588 29408588 G A OR10C1 Missense_Mutation p.D266N 0.21 deleterious(0.01) benign(0.008) TCGA-49-6743-01 6 2949149 2949149 G A SERPINB6 Missense_Mutation p.T243M 0.13 tolerated(0.27) benign(0.065) TCGA-49-6743-01 6 29555766 29555766 C T OR2H2 Silent p.F15F 0.11 TCGA-49-6743-01 6 29576387 29576387 G A GABBR1 Silent p.F661F 0.15 TCGA-49-6743-01 6 30876868 30876868 C T GTF2H4 Silent p.L19L 0.14 TCGA-49-6743-01 6 31118860 31118860 T A CCHCR1 Missense_Mutation p.S281C 0.21 deleterious(0.03) benign(0.036) TCGA-49-6743-01 6 40400642 40400642 C A LRFN2 Missense_Mutation p.D71Y 0.24 deleterious(0) probably_damaging(1) TCGA-49-6743-01 6 42934570 42934570 G C PEX6 Silent p.A637A 0.10 TCGA-49-6743-01 6 43167711 43167711 G A CUL9 Missense_Mutation p.M1067I 0.09 tolerated(0.16) benign(0.012) TCGA-49-6743-01 6 43167829 43167829 G C CUL9 Missense_Mutation p.E1107Q 0.15 deleterious(0.01) possibly_damaging(0.694) TCGA-49-6743-01 6 43251343 43251343 C T TTBK1 Silent p.S955S 0.15 TCGA-49-6743-01 6 49403171 49403171 G A MUT Nonsense_Mutation p.Q708* 0.11 TCGA-49-6743-01 6 49660567 49660567 C T CRISP2 Silent p.L217L 0.11 TCGA-49-6743-01 6 49696539 49696539 A G CRISP3 Silent p.S237S 0.26 TCGA-49-6743-01 6 49936521 49936521 C T DEFB113 Missense_Mutation p.G40S 0.10 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-49-6743-01 6 55638989 55638989 C - BMP5 Frame_Shift_Del p.Q295Hfs*21 0.18 TCGA-49-6743-01 6 56033064 56033064 C T COL21A1 Missense_Mutation p.R353H 0.30 deleterious(0) probably_damaging(0.991) TCGA-49-6743-01 6 56483445 56483445 C T DST Intron 0.25 TCGA-49-6743-01 6 70859612 70859612 C A COL19A1 Missense_Mutation p.A637D 0.36 tolerated(0.34) possibly_damaging(0.784) TCGA-49-6743-01 6 70963105 70963105 C A COL9A1 Missense_Mutation p.G583C 0.11 probably_damaging(1) TCGA-49-6743-01 6 71009823 71009823 G T COL9A1 Silent p.I74I 0.13 TCGA-49-6743-01 6 75969092 75969092 C A TMEM30A Missense_Mutation p.G219V 0.09 tolerated(0.23) possibly_damaging(0.612) TCGA-49-6743-01 6 80626291 80626291 C T ELOVL4 3'UTR 0.23 TCGA-49-6743-01 6 83733734 83733734 C A UBE3D Nonsense_Mutation p.E231* 0.19 TCGA-49-6743-01 6 83733741 83733741 A T UBE3D Nonsense_Mutation p.Y228* 0.22 TCGA-49-6743-01 6 83829494 83829494 G A DOPEY1 Missense_Mutation p.G303E 0.12 tolerated(0.3) probably_damaging(1) TCGA-49-6743-01 6 84290252 84290252 G C SNAP91 Nonsense_Mutation p.S739* 0.06 TCGA-49-6743-01 6 87969729 87969729 C G ZNF292 Missense_Mutation p.Q2128E 0.17 deleterious(0) probably_damaging(0.97) TCGA-49-6743-01 6 89977501 89977501 C G GABRR2 Missense_Mutation p.K211N 0.05 tolerated(0.06) probably_damaging(0.95) TCGA-49-6743-01 6 97616111 97616111 G A MMS22L Missense_Mutation p.L949F 0.12 deleterious(0.01) probably_damaging(0.962) TCGA-49-6743-01 7 100187947 100187947 G T FBXO24 Missense_Mutation p.V135F 0.14 deleterious_low_confidence(0.01) benign(0.403) TCGA-49-6743-01 7 107696354 107696354 G T LAMB4 Missense_Mutation p.R1160S 0.11 deleterious(0.01) possibly_damaging(0.581) TCGA-49-6743-01 7 119915238 119915238 C A KCND2 Silent p.A184A 0.09 TCGA-49-6743-01 7 120906781 120906781 C T CPED1 Missense_Mutation p.T851I 0.08 deleterious(0) possibly_damaging(0.628) TCGA-49-6743-01 7 121004205 121004205 T C FAM3C Missense_Mutation p.I104V 0.11 deleterious(0.02) possibly_damaging(0.623) TCGA-49-6743-01 7 121011399 121011399 C T FAM3C Missense_Mutation p.G76E 0.08 deleterious(0) probably_damaging(0.996) TCGA-49-6743-01 7 128454755 128454755 C G CCDC136 Missense_Mutation p.Q943E 0.22 deleterious(0) possibly_damaging(0.792) TCGA-49-6743-01 7 129349025 129349025 C T NRF1 Silent p.P239P 0.15 TCGA-49-6743-01 7 134618226 134618226 G A CALD1 Missense_Mutation p.E236K 0.10 deleterious_low_confidence(0) unknown(0) TCGA-49-6743-01 7 138545903 138545903 C A KIAA1549 Silent p.T1743T 0.18 TCGA-49-6743-01 7 141619431 141619431 C A OR9A4 Nonsense_Mutation p.Y252* 0.20 TCGA-49-6743-01 7 141752635 141752635 T A MGAM Missense_Mutation p.S1004T 0.13 tolerated(0.39) benign(0.002) TCGA-49-6743-01 7 143657162 143657162 C A OR2F1 Silent p.V33V 0.10 TCGA-49-6743-01 7 148543617 148543617 C A EZH2 Missense_Mutation p.R64M 0.20 deleterious(0.02) probably_damaging(0.976) TCGA-49-6743-01 7 149558928 149558928 C T ZNF862 Silent p.F893F 0.12 TCGA-49-6743-01 7 150745902 150745902 T A ASIC3 5'Flank 0.08 TCGA-49-6743-01 7 1524941 1524941 G A INTS1 Silent p.A1047A 0.14 TCGA-49-6743-01 7 152551607 152551607 G T ACTR3B Missense_Mutation p.R409L 0.11 deleterious(0) probably_damaging(0.999) TCGA-49-6743-01 7 15652021 15652021 C T MEOX2 Silent p.A302A 0.06 TCGA-49-6743-01 7 1586636 1586636 C G TMEM184A Missense_Mutation p.K398N 0.14 tolerated(0.09) benign(0.142) TCGA-49-6743-01 7 18705895 18705895 G A HDAC9 Silent p.E509E 0.11 TCGA-49-6743-01 7 21631062 21631062 C A DNAH11 Missense_Mutation p.A845D 0.09 benign(0.197) TCGA-49-6743-01 7 21781567 21781567 T G DNAH11 Missense_Mutation p.F2653C 0.24 benign(0.028) TCGA-49-6743-01 7 27147572 27147572 C A HOXA3 Nonsense_Mutation p.G432* 0.14 TCGA-49-6743-01 7 30931616 30931616 T A FAM188B Missense_Mutation p.L757Q 0.14 deleterious(0) probably_damaging(0.996) TCGA-49-6743-01 7 31683082 31683082 C G CCDC129 Missense_Mutation p.L726V 0.29 tolerated(0.87) benign(0.003) TCGA-49-6743-01 7 36579924 36579924 C T AOAH Splice_Site p.X436_splice 0.19 TCGA-49-6743-01 7 37947142 37947142 C A SFRP4 Missense_Mutation p.S327I 0.06 deleterious_low_confidence(0.05) benign(0.014) TCGA-49-6743-01 7 4150307 4150307 G A SDK1 Missense_Mutation p.G1113S 0.09 deleterious(0) possibly_damaging(0.505) TCGA-49-6743-01 7 4152959 4152959 C A SDK1 Missense_Mutation p.P1158H 0.10 deleterious(0) possibly_damaging(0.578) TCGA-49-6743-01 7 43843411 43843411 G T BLVRA Missense_Mutation p.M199I 0.13 tolerated(0.48) benign(0.017) TCGA-49-6743-01 7 44579390 44579390 C A NPC1L1 Missense_Mutation p.W202C 0.25 deleterious(0) probably_damaging(0.999) TCGA-49-6743-01 7 45743081 45743081 C T ADCY1 Missense_Mutation p.P854L 0.15 tolerated(0.65) probably_damaging(1) TCGA-49-6743-01 7 47866971 47866971 C T PKD1L1 Silent p.E2277E 0.12 TCGA-49-6743-01 7 4917240 4917240 C A RADIL Silent p.T177T 0.20 TCGA-49-6743-01 7 4917241 4917241 G A RADIL Missense_Mutation p.T177M 0.19 deleterious(0) possibly_damaging(0.604) TCGA-49-6743-01 7 50660724 50660724 C A GRB10 Silent p.L570L 0.25 TCGA-49-6743-01 7 53103859 53103859 C T POM121L12 Silent p.A165A 0.26 TCGA-49-6743-01 7 55240712 55240712 G T EGFR Silent p.G652G 0.15 TCGA-49-6743-01 7 57188189 57188189 G T ZNF479 Silent p.T311T 0.07 TCGA-49-6743-01 7 5963488 5963488 A C CCZ1 Missense_Mutation p.I430L 0.12 tolerated(0.14) benign(0.216) TCGA-49-6743-01 7 65220892 65220892 T G SNORA22 3'Flank 0.18 TCGA-49-6743-01 7 71571253 71571253 C A CALN1 Missense_Mutation p.D91Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-49-6743-01 7 72884773 72884773 C - BAZ1B Frame_Shift_Del p.K878Nfs*19 0.20 TCGA-49-6743-01 7 75187482 75187482 G A HIP1 Silent p.L485L 0.20 TCGA-49-6743-01 7 76940745 76940745 T A GSAP Missense_Mutation p.H832L 0.10 deleterious(0.01) benign(0.117) TCGA-49-6743-01 7 81693659 81693659 C T CACNA2D1 Missense_Mutation p.G247E 0.29 deleterious(0) probably_damaging(0.971) TCGA-49-6743-01 7 81714110 81714110 G C CACNA2D1 Silent p.A211A 0.12 TCGA-49-6743-01 7 82583767 82583767 C A PCLO Nonsense_Mutation p.E2168* 0.15 TCGA-49-6743-01 7 82583852 82583852 T C PCLO Silent p.E2139E 0.15 TCGA-49-6743-01 7 82784218 82784218 G A PCLO Missense_Mutation p.P580L 0.25 unknown(0) TCGA-49-6743-01 7 82784423 82784423 G A PCLO Nonsense_Mutation p.Q512* 0.11 TCGA-49-6743-01 7 83590818 83590818 C A SEMA3A Missense_Mutation p.D729Y 0.12 deleterious(0) probably_damaging(0.935) TCGA-49-6743-01 7 87046795 87046795 T A ABCB4 Missense_Mutation p.I839L 0.13 tolerated(0.8) benign(0.002) TCGA-49-6743-01 7 88965153 88965153 A G ZNF804B Missense_Mutation p.S953G 0.23 tolerated(0.38) benign(0.013) TCGA-49-6743-01 7 99129944 99129944 C G ZKSCAN5 3'UTR 0.19 TCGA-49-6743-01 7 99697637 99697637 C A MCM7 Missense_Mutation p.L37F 0.18 deleterious(0.02) possibly_damaging(0.835) TCGA-49-6743-01 8 10480175 10480175 G T RP1L1 Silent p.A179A 0.09 TCGA-49-6743-01 8 110131512 110131512 C A TRHR Missense_Mutation p.T342K 0.13 tolerated(0.93) benign(0.001) TCGA-49-6743-01 8 113960090 113960090 A G CSMD3 Silent p.I479I 0.11 TCGA-49-6743-01 8 11706573 11706573 C T CTSB Missense_Mutation p.G143D 0.13 tolerated(0.52) benign(0.003) TCGA-49-6743-01 8 117859755 117859755 C T RAD21 Missense_Mutation p.R627K 0.11 tolerated(0.75) benign(0.134) TCGA-49-6743-01 8 118165313 118165313 T C SLC30A8 Silent p.F134F 0.17 TCGA-49-6743-01 8 122641191 122641191 C T HAS2 Missense_Mutation p.M130I 0.14 deleterious(0) possibly_damaging(0.77) TCGA-49-6743-01 8 124658090 124658090 G A KLHL38 Silent p.C545C 0.15 TCGA-49-6743-01 8 126049569 126049569 T C KIAA0196 Missense_Mutation p.I1031V 0.13 tolerated(0.64) benign(0.003) TCGA-49-6743-01 8 126051107 126051107 G A KIAA0196 Silent p.L1017L 0.12 TCGA-49-6743-01 8 131861864 131861864 C A ADCY8 Missense_Mutation p.G799V 0.24 tolerated(0.8) benign(0) TCGA-49-6743-01 8 131861865 131861865 C A ADCY8 Missense_Mutation p.G799C 0.23 tolerated(0.18) benign(0.009) TCGA-49-6743-01 8 133723080 133723080 A T TMEM71 3'UTR 0.17 TCGA-49-6743-01 8 133816176 133816176 A G PHF20L1 Missense_Mutation p.K207R 0.19 tolerated(0.28) benign(0.053) TCGA-49-6743-01 8 144993348 144993348 C G PLEC Missense_Mutation p.E3684D 0.15 probably_damaging(0.928) TCGA-49-6743-01 8 145058780 145058780 C T PARP10 Missense_Mutation p.D464N 0.11 deleterious(0) benign(0.001) TCGA-49-6743-01 8 17102606 17102606 T A CNOT7 Missense_Mutation p.N19I 0.17 deleterious(0) probably_damaging(0.999) TCGA-49-6743-01 8 1728673 1728673 G T CLN8 Missense_Mutation p.Q267H 0.15 tolerated(0.11) benign(0.002) TCGA-49-6743-01 8 18258446 18258446 T C NAT2 3'UTR 0.24 TCGA-49-6743-01 8 20107322 20107322 C A LZTS1 Missense_Mutation p.A568S 0.13 tolerated(0.91) benign(0.011) TCGA-49-6743-01 8 22106630 22106630 A T POLR3D Silent p.P243P 0.17 TCGA-49-6743-01 8 24359041 24359041 G A ADAM7 Silent p.E720E 0.08 TCGA-49-6743-01 8 25337527 25337527 G T CDCA2 Missense_Mutation p.V307F 0.09 tolerated(0.33) benign(0.126) TCGA-49-6743-01 8 33451051 33451051 C G DUSP26 Missense_Mutation p.G146R 0.19 deleterious(0.04) possibly_damaging(0.899) TCGA-49-6743-01 8 52412322 52412322 T C PXDNL Missense_Mutation p.H130R 0.15 tolerated(0.06) possibly_damaging(0.775) TCGA-49-6743-01 8 68939499 68939499 T A PREX2 Missense_Mutation p.L162M 0.16 tolerated(0.1) probably_damaging(0.999) TCGA-49-6743-01 8 68968154 68968154 C A PREX2 Missense_Mutation p.L395M 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-49-6743-01 8 70488298 70488298 C T SULF1 Missense_Mutation p.P89L 0.20 deleterious(0) probably_damaging(0.991) TCGA-49-6743-01 8 77618205 77618205 C G ZFHX4 Missense_Mutation p.L628V 0.12 possibly_damaging(0.567) TCGA-49-6743-01 8 77768283 77768283 G A ZFHX4 Silent p.Q3042Q 0.17 TCGA-49-6743-01 8 87951878 87951879 - A CNBD1 Frame_Shift_Ins p.N110Kfs*17 0.11 TCGA-49-6743-01 8 89086923 89086923 G A MMP16 Missense_Mutation p.P378S 0.11 deleterious(0) probably_damaging(0.999) TCGA-49-6743-01 8 89128820 89128820 G T MMP16 Silent p.P333P 0.16 TCGA-49-6743-01 8 96166319 96166319 G A PLEKHF2 Missense_Mutation p.S16N 0.07 tolerated(0.06) benign(0.001) TCGA-49-6743-01 9 112153798 112153798 T C PTPN3 Missense_Mutation p.K666R 0.09 tolerated(0.47) benign(0.002) TCGA-49-6743-01 9 113275339 113275339 G T SVEP1 Silent p.I390I 0.11 TCGA-49-6743-01 9 12704597 12704597 A G TYRP1 Missense_Mutation p.N385D 0.08 deleterious(0) probably_damaging(1) TCGA-49-6743-01 9 130206394 130206394 G T ZNF79 Missense_Mutation p.D139Y 0.07 deleterious(0.04) benign(0.06) TCGA-49-6743-01 9 132630679 132630679 G T USP20 Silent p.A362A 0.10 TCGA-49-6743-01 9 135926292 135926292 A T GTF3C5 Missense_Mutation p.E232V 0.11 deleterious(0) possibly_damaging(0.848) TCGA-49-6743-01 9 136633700 136633700 A G VAV2 Missense_Mutation p.I818T 0.14 deleterious(0) benign(0.394) TCGA-49-6743-01 9 139903447 139903447 C A ABCA2 Missense_Mutation p.V2296L 0.16 deleterious(0.04) benign(0.007) TCGA-49-6743-01 9 139909475 139909475 T C ABCA2 Missense_Mutation p.I1258V 0.07 tolerated(0.16) benign(0.163) TCGA-49-6743-01 9 141010017 141010017 C - CACNA1B Frame_Shift_Del p.L1889Cfs*5 0.14 TCGA-49-6743-01 9 18681948 18681948 A G ADAMTSL1 Missense_Mutation p.K494E 0.09 deleterious(0) possibly_damaging(0.905) TCGA-49-6743-01 9 19093229 19093229 G A HAUS6 Missense_Mutation p.H126Y 0.12 deleterious(0) probably_damaging(0.953) TCGA-49-6743-01 9 19116393 19116393 C A PLIN2 Missense_Mutation p.M389I 0.10 tolerated(0.06) possibly_damaging(0.61) TCGA-49-6743-01 9 2084172 2084172 A G SMARCA2 Missense_Mutation p.I834M 0.23 possibly_damaging(0.639) TCGA-49-6743-01 9 21187075 21187075 A T IFNA4 Silent p.L152L 0.10 TCGA-49-6743-01 9 34249871 34249871 G A UBAP1 Missense_Mutation p.R457Q 0.18 tolerated(0.08) benign(0.041) TCGA-49-6743-01 9 37126665 37126665 A T ZCCHC7 Silent p.A112A 0.10 TCGA-49-6743-01 9 37744546 37744546 G T FRMPD1 Missense_Mutation p.R839S 0.07 deleterious(0) probably_damaging(0.999) TCGA-49-6743-01 9 6252893 6252893 C G IL33 Missense_Mutation p.A124G 0.09 deleterious(0.01) benign(0.364) TCGA-49-6743-01 9 71098938 71098938 G A PGM5 Missense_Mutation p.V485M 0.07 deleterious(0) possibly_damaging(0.87) TCGA-49-6743-01 9 77275562 77275562 C T RORB Missense_Mutation p.H223Y 0.17 tolerated(0.34) possibly_damaging(0.715) TCGA-49-6743-01 9 77377872 77377872 C A TRPM6 Missense_Mutation p.A1239S 0.06 tolerated(0.15) benign(0.011) TCGA-49-6743-01 9 78804121 78804121 G C PCSK5 Missense_Mutation p.G831A 0.08 tolerated(0.09) benign(0.265) TCGA-49-6743-01 9 8341785 8341785 C A PTPRD Nonsense_Mutation p.E1619* 0.11 TCGA-49-6743-01 9 84603695 84603695 C A SPATA31D1 5'UTR 0.22 TCGA-49-6743-01 9 84608488 84608488 G A SPATA31D1 Missense_Mutation p.E1035K 0.15 tolerated(0.6) benign(0.008) TCGA-49-6743-01 9 8471018 8471018 G T PTPRD Missense_Mutation p.P1161T 0.15 deleterious(0) possibly_damaging(0.776) TCGA-49-6743-01 9 94794783 94794784 GG A SPTLC1 Frame_Shift_Del p.S462Lfs*6 0.10 TCGA-49-6743-01 9 99521845 99521845 G C ZNF510 Missense_Mutation p.Q423E 0.16 deleterious(0.01) benign(0.384) TCGA-49-6743-01 X 103495448 103495448 C A ESX1 Missense_Mutation p.A228S 0.24 tolerated(0.39) benign(0.002) TCGA-49-6743-01 X 103498885 103498885 C T ESX1 Silent p.Q152Q 0.23 TCGA-49-6743-01 X 10427696 10427696 C T MID1 Silent p.L479L 0.11 TCGA-49-6743-01 X 111698577 111698577 C G ZCCHC16 Missense_Mutation p.D207E 0.25 deleterious(0) probably_damaging(0.999) TCGA-49-6743-01 X 123504071 123504071 C G SH2D1A Missense_Mutation p.L83V 0.27 deleterious(0) probably_damaging(0.999) TCGA-49-6743-01 X 129150034 129150034 G T BCORL1 Missense_Mutation p.V1096L 0.32 benign(0.055) TCGA-49-6743-01 X 131202484 131202484 G A MST4 Missense_Mutation p.D162N 0.15 deleterious(0) probably_damaging(0.975) TCGA-49-6743-01 X 132161441 132161441 G C USP26 Missense_Mutation p.Q270E 0.16 tolerated(0.18) benign(0.011) TCGA-49-6743-01 X 132162273 132162273 G A USP26 5'UTR 0.10 TCGA-49-6743-01 X 135770132 135770132 G T ARHGEF6 Missense_Mutation p.Q402K 0.22 tolerated(0.91) benign(0.001) TCGA-49-6743-01 X 139865924 139865924 C T CDR1 Nonsense_Mutation p.W203* 0.26 TCGA-49-6743-01 X 14599363 14599363 G T GLRA2 Missense_Mutation p.S110I 0.30 tolerated(0.08) possibly_damaging(0.703) TCGA-49-6743-01 X 150832647 150832647 G T PASD1 Missense_Mutation p.D300Y 0.31 deleterious(0) benign(0.148) TCGA-49-6743-01 X 151870085 151870085 C A MAGEA6 Silent p.R259R 0.28 TCGA-49-6743-01 X 153049512 153049512 C T SRPK3 Missense_Mutation p.P331S 0.28 tolerated(0.38) possibly_damaging(0.641) TCGA-49-6743-01 X 153130793 153130793 C A L1CAM Missense_Mutation p.G904W 0.19 deleterious(0) probably_damaging(1) TCGA-49-6743-01 X 18842157 18842157 T C PPEF1 Missense_Mutation p.Y540H 0.30 deleterious(0) probably_damaging(0.993) TCGA-49-6743-01 X 19377730 19377730 C T PDHA1 Missense_Mutation p.R416C 0.11 deleterious(0.02) benign(0.321) TCGA-49-6743-01 X 21508641 21508641 A T CNKSR2 Missense_Mutation p.Q209L 0.08 deleterious(0) benign(0.021) TCGA-49-6743-01 X 24742503 24742503 G T POLA1 Missense_Mutation p.D412Y 0.31 deleterious(0) probably_damaging(0.95) TCGA-49-6743-01 X 2947357 2947357 C G ARSH Silent p.L423L 0.14 TCGA-49-6743-01 X 34150217 34150217 T C FAM47A Missense_Mutation p.Y60C 0.15 tolerated(0.18) probably_damaging(0.982) TCGA-49-6743-01 X 49083471 49083471 C T CACNA1F Missense_Mutation p.E413K 0.22 deleterious(0.02) possibly_damaging(0.5) TCGA-49-6743-01 X 50052996 50052996 G C CCNB3 Missense_Mutation p.K609N 0.26 tolerated(0.25) benign(0.036) TCGA-49-6743-01 X 51150797 51150797 C T CXorf67 Missense_Mutation p.S310F 0.17 deleterious(0) benign(0.24) TCGA-49-6743-01 X 53106887 53106887 G A GPR173 Missense_Mutation p.G362S 0.11 tolerated_low_confidence(0.7) benign(0.014) TCGA-49-6743-01 X 53634608 53634608 T A HUWE1 Missense_Mutation p.Q791L 0.25 benign(0.295) TCGA-49-6743-01 X 65427035 65427035 A G HEPH Splice_Site p.X818_splice 0.23 TCGA-49-6743-01 X 73065478 73065478 G A XIST RNA 0.14 TCGA-49-6743-01 X 73963423 73963423 G T KIAA2022 Missense_Mutation p.D323E 0.29 tolerated(1) benign(0.067) TCGA-49-6743-01 X 74742846 74742846 C T ZDHHC15 Nonsense_Mutation p.W5* 0.47 TCGA-49-6743-01 X 77381315 77381315 C T PGK1 Silent p.L414L 0.12 TCGA-49-6743-01 X 77529230 77529230 C T CYSLTR1 Missense_Mutation p.G5E 0.13 tolerated(0.66) benign(0.001) TCGA-49-6743-01 X 78427094 78427094 C T GPR174 Missense_Mutation p.P197L 0.19 deleterious(0) probably_damaging(1) TCGA-49-6743-01 X 79286266 79286266 A T TBX22 Missense_Mutation p.M407L 0.25 tolerated(0.15) benign(0.007) TCGA-49-6743-01 X 8503684 8503684 C T KAL1 Missense_Mutation p.R597K 0.14 tolerated(0.07) probably_damaging(0.994) TCGA-49-6743-01 X 90690528 90690528 A G PABPC5 5'UTR 0.18 TCGA-49-6743-01 X 92926978 92926978 G A NAP1L3 Silent p.F442F 0.14 TCGA-49-6744-01 10 101977791 101977791 T A CHUK Silent p.P298P 0.16 TCGA-49-6744-01 10 102683760 102683760 A G FAM178A Silent p.E334E 0.11 TCGA-49-6744-01 10 119029956 119029956 T A SLC18A2 Silent p.P474P 0.06 TCGA-49-6744-01 10 124740146 124740146 G A PSTK Missense_Mutation p.G51S 0.19 tolerated(0.7) benign(0.095) TCGA-49-6744-01 10 131640445 131640445 C G EBF3 Missense_Mutation p.G427A 0.05 tolerated_low_confidence(0.08) possibly_damaging(0.886) TCGA-49-6744-01 10 35349836 35349836 T A CUL2 Missense_Mutation p.S114C 0.16 deleterious(0) probably_damaging(0.947) TCGA-49-6744-01 10 45953764 45953764 C A MARCH8 Nonsense_Mutation p.G267* 0.10 TCGA-49-6744-01 10 58118214 58118214 C A ZWINT Missense_Mutation p.G267C 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.713) TCGA-49-6744-01 10 69954182 69954182 A T MYPN Silent p.R996R 0.18 TCGA-49-6744-01 10 72511354 72511354 G T ADAMTS14 Nonsense_Mutation p.E853* 0.15 TCGA-49-6744-01 10 73765502 73765502 T A CHST3 5'UTR 0.25 TCGA-49-6744-01 10 95380394 95380394 C T PDE6C Silent p.S162S 0.09 TCGA-49-6744-01 11 104874001 104874001 C A CASP5 Missense_Mutation p.E194D 0.06 deleterious(0) possibly_damaging(0.556) TCGA-49-6744-01 11 111573994 111573994 C G SIK2 Missense_Mutation p.I265M 0.14 deleterious(0) probably_damaging(1) TCGA-49-6744-01 11 25098875 25098875 G A LUZP2 Missense_Mutation p.E287K 0.05 tolerated(0.6) benign(0.056) TCGA-49-6744-01 11 5364598 5364598 G T OR51B5 Missense_Mutation p.L53I 0.10 deleterious(0) probably_damaging(0.999) TCGA-49-6744-01 11 55406405 55406405 A C OR4P4 Missense_Mutation p.H191P 0.17 deleterious(0.03) benign(0.033) TCGA-49-6744-01 11 55406406 55406406 C A OR4P4 Missense_Mutation p.H191Q 0.17 deleterious(0.04) benign(0.023) TCGA-49-6744-01 11 55594859 55594859 C A OR5L2 Silent p.L55L 0.06 TCGA-49-6744-01 11 5624904 5624904 G A TRIM6 Missense_Mutation p.R149Q 0.06 tolerated(0.05) possibly_damaging(0.481) TCGA-49-6744-01 11 57114033 57114033 C T P2RX3 Silent p.H45H 0.08 TCGA-49-6744-01 11 58125859 58125859 T A OR5B17 Silent p.T228T 0.21 TCGA-49-6744-01 11 5862540 5862540 G T OR52E6 Silent p.V196V 0.23 TCGA-49-6744-01 11 61026563 61026563 C T VWCE Missense_Mutation p.A818T 0.18 tolerated_low_confidence(0.1) benign(0.055) TCGA-49-6744-01 11 61084039 61084039 C A DDB1 Missense_Mutation p.G409V 0.18 deleterious(0) probably_damaging(1) TCGA-49-6744-01 11 64111737 64111737 C G CCDC88B Missense_Mutation p.S575C 0.08 deleterious_low_confidence(0.01) benign(0.336) TCGA-49-6744-01 11 65272642 65272642 T C MALAT1 RNA 0.12 TCGA-49-6744-01 11 6650685 6650685 G A DCHS1 Missense_Mutation p.T1720I 0.19 deleterious(0.02) probably_damaging(0.976) TCGA-49-6744-01 11 6806622 6806622 G T OR2AG1 Missense_Mutation p.M118I 0.10 deleterious(0) probably_damaging(0.998) TCGA-49-6744-01 11 68682307 68682307 C T IGHMBP2 Missense_Mutation p.P243L 0.09 deleterious(0) probably_damaging(1) TCGA-49-6744-01 11 7324269 7324269 G C SYT9 Splice_Site p.X49_splice 0.13 TCGA-49-6744-01 11 77051741 77051741 C A PAK1 Missense_Mutation p.V356L 0.14 deleterious(0.02) benign(0.325) TCGA-49-6744-01 12 108686090 108686090 T A CMKLR1 Missense_Mutation p.H217L 0.07 tolerated(0.06) benign(0.257) TCGA-49-6744-01 12 109877531 109877531 G A MYO1H Missense_Mutation p.R781Q 0.19 tolerated(0.06) possibly_damaging(0.778) TCGA-49-6744-01 12 11034942 11034942 C A PRH1 Missense_Mutation p.Q131H 0.17 tolerated_low_confidence(0.17) unknown(0) TCGA-49-6744-01 12 130830955 130830955 C A PIWIL1 Missense_Mutation p.F119L 0.23 deleterious(0) benign(0.018) TCGA-49-6744-01 12 41966757 41966757 G T PDZRN4 Nonsense_Mutation p.E726* 0.10 TCGA-49-6744-01 12 4835766 4835766 G A GALNT8 Missense_Mutation p.E94K 0.12 tolerated(0.09) benign(0.031) TCGA-49-6744-01 12 56221779 56221779 G A DNAJC14 Missense_Mutation p.R222W 0.07 deleterious(0) possibly_damaging(0.591) TCGA-49-6744-01 12 78225279 78225279 C A NAV3 Missense_Mutation p.P13Q 0.18 deleterious_low_confidence(0.05) probably_damaging(0.999) TCGA-49-6744-01 12 91372012 91372012 C A EPYC Missense_Mutation p.G65W 0.17 tolerated(0.08) possibly_damaging(0.598) TCGA-49-6744-01 12 91372013 91372013 T A EPYC Silent p.S64S 0.17 TCGA-49-6744-01 13 31498491 31498491 A T MEDAG Silent p.S277S 0.16 TCGA-49-6744-01 14 21762860 21762860 C T RPGRIP1 Missense_Mutation p.P37L 0.14 tolerated(0.61) benign(0.033) TCGA-49-6744-01 14 22251518 22251518 G T TRAV7 Silent p.T45T 0.10 TCGA-49-6744-01 14 24735687 24735687 C A RABGGTA Missense_Mutation p.D502Y 0.10 deleterious(0.01) benign(0.366) TCGA-49-6744-01 14 24788542 24788542 G T ADCY4 Missense_Mutation p.A945E 0.15 tolerated(1) benign(0.071) TCGA-49-6744-01 14 24793584 24793584 C A ADCY4 Missense_Mutation p.A613S 0.15 deleterious(0.02) benign(0.02) TCGA-49-6744-01 14 58048020 58048020 G T SLC35F4 Missense_Mutation p.T276K 0.24 deleterious(0) probably_damaging(0.997) TCGA-49-6744-01 14 65569044 65569045 - C MAX Frame_Shift_Ins p.D5Gfs*2 0.22 TCGA-49-6744-01 15 28326847 28326847 C A OCA2 Missense_Mutation p.Q58H 0.10 deleterious_low_confidence(0.02) benign(0.235) TCGA-49-6744-01 15 43748729 43748729 G A TP53BP1 Missense_Mutation p.P693S 0.08 tolerated_low_confidence(0.54) benign(0.012) TCGA-49-6744-01 15 48414087 48414087 C A SLC24A5 Nonsense_Mutation p.S52* 0.05 TCGA-49-6744-01 15 50534354 50534354 G A HDC 3'UTR 0.14 TCGA-49-6744-01 15 62302683 62302683 C A VPS13C Silent p.L333L 0.06 TCGA-49-6744-01 15 66857164 66857164 G T LCTL Silent p.G44G 0.10 TCGA-49-6744-01 15 86076960 86076960 T G AKAP13 Missense_Mutation p.N109K 0.04 deleterious(0.04) probably_damaging(0.997) TCGA-49-6744-01 16 31283276 31283276 G T ITGAM Missense_Mutation p.G223W 0.07 deleterious(0) probably_damaging(1) TCGA-49-6744-01 16 3299593 3299593 G T MEFV Missense_Mutation p.S366R 0.36 tolerated(0.07) benign(0.215) TCGA-49-6744-01 16 67265143 67265143 G C FHOD1 Missense_Mutation p.P872R 0.25 deleterious(0) probably_damaging(0.999) TCGA-49-6744-01 16 7760688 7760688 C A RBFOX1 Missense_Mutation p.L400I 0.26 tolerated_low_confidence(0.2) probably_damaging(0.986) TCGA-49-6744-01 16 79633711 79633711 A T MAF Missense_Mutation p.F30Y 0.09 deleterious(0) unknown(0) TCGA-49-6744-01 17 10419891 10419891 C A MYH1 Missense_Mutation p.E23D 0.18 tolerated(0.05) probably_damaging(0.96) TCGA-49-6744-01 17 21215469 21215469 C A MAP2K3 Missense_Mutation p.L264M 0.15 deleterious(0.03) probably_damaging(0.942) TCGA-49-6744-01 17 33259426 33259426 C A CCT6B Missense_Mutation p.G436V 0.11 deleterious(0) probably_damaging(0.974) TCGA-49-6744-01 17 3352250 3352250 G A SPATA22 Missense_Mutation p.L175F 0.03 tolerated(0.67) benign(0.019) TCGA-49-6744-01 17 34937774 34937774 A T GGNBP2 Missense_Mutation p.M341L 0.13 deleterious(0.04) benign(0.01) TCGA-49-6744-01 17 36455435 36455435 G T MRPL45 Splice_Site p.X121_splice 0.10 TCGA-49-6744-01 17 39138576 39138576 T A KRT40 Nonsense_Mutation p.K224* 0.10 TCGA-49-6744-01 17 43580714 43580714 G T LRRC37A4P 3'Flank 0.13 TCGA-49-6744-01 17 4624420 4624420 C T ARRB2 3'UTR 0.21 TCGA-49-6744-01 17 58541402 58541402 C T APPBP2 Missense_Mutation p.V248I 0.10 tolerated(0.12) benign(0.02) TCGA-49-6744-01 17 60107282 60107283 GT - MED13 Frame_Shift_Del p.P368Qfs*10 0.20 TCGA-49-6744-01 17 6594199 6594199 C A SLC13A5 Missense_Mutation p.A446S 0.06 tolerated(0.4) benign(0.035) TCGA-49-6744-01 17 72338032 72338032 C A KIF19 Missense_Mutation p.D46E 0.15 deleterious(0) probably_damaging(0.971) TCGA-49-6744-01 17 79517597 79517597 T C C17orf70 Missense_Mutation p.H308R 0.10 tolerated(0.37) possibly_damaging(0.576) TCGA-49-6744-01 18 32887120 32887120 G T ZNF271 RNA 0.06 TCGA-49-6744-01 18 42532822 42532822 C G SETBP1 Missense_Mutation p.L1173V 0.09 deleterious(0) probably_damaging(0.993) TCGA-49-6744-01 18 43262466 43262466 G T SLC14A2 Missense_Mutation p.Q915H 0.07 deleterious_low_confidence(0.04) probably_damaging(0.952) TCGA-49-6744-01 18 47421485 47421485 C G MYO5B Missense_Mutation p.M957I 0.10 tolerated(0.21) benign(0.001) TCGA-49-6744-01 18 63492008 63492008 G T CDH7 Missense_Mutation p.G308C 0.14 deleterious(0.02) probably_damaging(0.992) TCGA-49-6744-01 18 70417390 70417390 G T NETO1 Nonsense_Mutation p.S483* 0.15 TCGA-49-6744-01 19 17942109 17942109 C A JAK3 Missense_Mutation p.G969V 0.10 deleterious(0) probably_damaging(0.989) TCGA-49-6744-01 19 30936068 30936068 G T ZNF536 Missense_Mutation p.M533I 0.07 tolerated(0.1) benign(0.006) TCGA-49-6744-01 19 36580003 36580003 A T WDR62 Missense_Mutation p.Q611L 0.23 deleterious(0.01) possibly_damaging(0.667) TCGA-49-6744-01 19 37005826 37005826 G A ZNF260 Silent p.H105H 0.06 TCGA-49-6744-01 19 425152 425152 C A SHC2 Missense_Mutation p.Q418H 0.20 deleterious(0) probably_damaging(0.938) TCGA-49-6744-01 19 45541024 45541024 A G RELB Silent p.L572L 0.11 TCGA-49-6744-01 19 49813408 49813408 C A SLC6A16 Missense_Mutation p.G197C 0.24 deleterious(0.03) possibly_damaging(0.621) TCGA-49-6744-01 19 50413058 50413058 C A NUP62 Missense_Mutation p.G3W 0.16 deleterious(0.01) unknown(0) TCGA-49-6744-01 19 52658445 52658445 C A ZNF836 Missense_Mutation p.D831Y 0.10 deleterious(0) possibly_damaging(0.678) TCGA-49-6744-01 19 55385779 55385779 G A FCAR Missense_Mutation p.V12M 0.12 tolerated(0.08) benign(0.437) TCGA-49-6744-01 19 56701419 56701419 T A ZSCAN5B Missense_Mutation p.H422L 0.05 deleterious(0.01) benign(0.245) TCGA-49-6744-01 19 57985662 57985662 G T ZNF772 Silent p.G150G 0.07 TCGA-49-6744-01 19 58067432 58067432 G A ZNF550 Intron 0.17 TCGA-49-6744-01 19 6427222 6427222 C T SLC25A41 Missense_Mutation p.G278R 0.19 tolerated(0.32) benign(0.048) TCGA-49-6744-01 19 9066578 9066578 G C MUC16 Silent p.T6956T 0.10 TCGA-49-6744-01 19 9270789 9270789 G A ZNF317 Splice_Site p.X157_splice 0.06 TCGA-49-6744-01 1 11561297 11561297 G T PTCHD2 Missense_Mutation p.S83I 0.18 tolerated_low_confidence(0.52) benign(0.197) TCGA-49-6744-01 1 145536120 145536120 C T ITGA10 Nonsense_Mutation p.Q738* 0.24 TCGA-49-6744-01 1 149785214 149785214 G A HIST2H3D Missense_Mutation p.A8V 0.06 deleterious_low_confidence(0.01) benign(0) TCGA-49-6744-01 1 152283027 152283027 C T FLG Silent p.V1445V 0.03 TCGA-49-6744-01 1 152328814 152328814 C A FLG2 Missense_Mutation p.G483V 0.10 unknown(0) TCGA-49-6744-01 1 156878710 156878710 C G PEAR1 Silent p.G431G 0.22 TCGA-49-6744-01 1 167095997 167095997 C A DUSP27 Silent p.A543A 0.10 TCGA-49-6744-01 1 169511383 169511383 C T F5 Nonsense_Mutation p.W982* 0.05 TCGA-49-6744-01 1 170961380 170961380 G C MROH9 Missense_Mutation p.L368F 0.08 deleterious(0.01) probably_damaging(0.975) TCGA-49-6744-01 1 171154954 171154954 T G FMO2 Silent p.T34T 0.04 TCGA-49-6744-01 1 176845741 176845741 C A ASTN1 Missense_Mutation p.R1132L 0.13 deleterious(0) probably_damaging(0.96) TCGA-49-6744-01 1 186122916 186122916 G A HMCN1 Missense_Mutation p.G5018E 0.10 probably_damaging(0.999) TCGA-49-6744-01 1 186645168 186645168 C G PTGS2 Missense_Mutation p.W373C 0.06 deleterious(0) probably_damaging(1) TCGA-49-6744-01 1 192992151 192992151 C T UCHL5 Missense_Mutation p.D251N 0.06 deleterious(0.03) benign(0.067) TCGA-49-6744-01 1 200635159 200635159 C T DDX59 Missense_Mutation p.G237E 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-49-6744-01 1 200969614 200969614 G A KIF21B Missense_Mutation p.P530L 0.12 tolerated(0.76) probably_damaging(0.987) TCGA-49-6744-01 1 204379882 204379882 A T PPP1R15B Missense_Mutation p.S220T 0.05 deleterious(0.02) probably_damaging(0.999) TCGA-49-6744-01 1 225685404 225685404 T A ENAH 3'UTR 0.21 TCGA-49-6744-01 1 236730018 236730018 G A HEATR1 Silent p.L1412L 0.10 TCGA-49-6744-01 1 237843805 237843805 T G RYR2 Missense_Mutation p.F2982C 0.09 probably_damaging(0.997) TCGA-49-6744-01 1 237886560 237886560 C A RYR2 Missense_Mutation p.Q3563K 0.08 benign(0.007) TCGA-49-6744-01 1 241913018 241913018 G T WDR64 Missense_Mutation p.M578I 0.15 tolerated(1) benign(0.005) TCGA-49-6744-01 1 246493833 246493833 C T SMYD3 Missense_Mutation p.G115R 0.05 tolerated(0.33) benign(0.011) TCGA-49-6744-01 1 247978621 247978621 G T OR14A16 Missense_Mutation p.S137R 0.06 tolerated(0.94) benign(0.001) TCGA-49-6744-01 1 248402509 248402509 T C OR2M4 Silent p.S93S 0.10 TCGA-49-6744-01 1 248636745 248636745 C G OR2T3 Missense_Mutation p.L32V 0.06 tolerated(0.1) benign(0.351) TCGA-49-6744-01 1 29606079 29606079 C T PTPRU Missense_Mutation p.P559S 0.05 deleterious(0) probably_damaging(1) TCGA-49-6744-01 1 32163648 32163648 C T COL16A1 Missense_Mutation p.M172I 0.11 unknown(0) TCGA-49-6744-01 1 43632904 43632904 C A EBNA1BP2 Silent p.V235V 0.08 TCGA-49-6744-01 1 63998406 63998406 T A EFCAB7 Missense_Mutation p.D155E 0.10 deleterious(0.02) benign(0.076) TCGA-49-6744-01 20 2446399 2446399 C A SNRPB Silent p.G74G 0.07 TCGA-49-6744-01 20 34091626 34091626 G C CEP250 Missense_Mutation p.R1810T 0.16 benign(0.425) TCGA-49-6744-01 20 37177415 37177415 A T RALGAPB Nonsense_Mutation p.R996* 0.04 TCGA-49-6744-01 20 42806414 42806414 C A JPH2 Intron 0.19 TCGA-49-6744-01 20 61430905 61430905 C G MRGBP Missense_Mutation p.D175E 0.04 tolerated(0.39) probably_damaging(0.952) TCGA-49-6744-01 20 8717720 8717720 G T PLCB1 Missense_Mutation p.V697L 0.10 deleterious(0.03) probably_damaging(0.981) TCGA-49-6744-01 21 34635338 34635338 G - IFNAR2 Frame_Shift_Del p.D361Tfs*31 0.12 TCGA-49-6744-01 21 44524456 44524456 G A U2AF1 Missense_Mutation p.S34F 0.28 deleterious(0) possibly_damaging(0.835) TCGA-49-6744-01 21 47359949 47359949 A T PCBP3 Silent p.I305I 0.06 TCGA-49-6744-01 22 18387502 18387502 C T MICAL3 Missense_Mutation p.R123H 0.15 probably_damaging(0.999) TCGA-49-6744-01 22 18562679 18562679 C A PEX26 Silent p.I90I 0.17 TCGA-49-6744-01 22 19752613 19752613 G T TBX1 Missense_Mutation p.V273F 0.09 deleterious(0) probably_damaging(0.993) TCGA-49-6744-01 22 36684363 36684363 C A MYH9 Nonsense_Mutation p.E1623* 0.11 TCGA-49-6744-01 22 36684364 36684364 C A MYH9 Silent p.L1622L 0.08 TCGA-49-6744-01 2 11718443 11718443 C A GREB1 Missense_Mutation p.P220T 0.17 tolerated(0.34) benign(0.046) TCGA-49-6744-01 2 11755257 11755257 T A GREB1 Missense_Mutation p.C1055S 0.06 tolerated(0.29) probably_damaging(0.995) TCGA-49-6744-01 2 130900021 130900021 G A CCDC74B Intron 0.11 TCGA-49-6744-01 2 135988469 135988469 C G ZRANB3 Missense_Mutation p.R523P 0.06 deleterious(0) probably_damaging(0.984) TCGA-49-6744-01 2 169869807 169869807 T C ABCB11 Missense_Mutation p.N122D 0.24 tolerated(0.12) benign(0.021) TCGA-49-6744-01 2 179395805 179395805 G C TTN Silent p.T35179T 0.04 TCGA-49-6744-01 2 179575972 179575972 A C TTN Missense_Mutation p.S9331A 0.21 TCGA-49-6744-01 2 189839273 189839273 A G COL3A1 Missense_Mutation p.I20V 0.06 unknown(0) TCGA-49-6744-01 2 189904155 189904155 C A COL5A2 Silent p.A1256A 0.15 TCGA-49-6744-01 2 190660540 190660540 G T PMS1 Missense_Mutation p.G60C 0.09 deleterious(0) probably_damaging(1) TCGA-49-6744-01 2 196718111 196718111 C A DNAH7 Nonsense_Mutation p.G2913* 0.23 TCGA-49-6744-01 2 207026077 207026077 G T EEF1B2 Nonsense_Mutation p.G71* 0.08 TCGA-49-6744-01 2 207026150 207026150 G C EEF1B2 Missense_Mutation p.S95T 0.07 tolerated(0.38) benign(0.073) TCGA-49-6744-01 2 220246787 220246787 G A DNPEP Silent p.C337C 0.08 TCGA-49-6744-01 2 220354583 220354583 G C SPEG Missense_Mutation p.S2948T 0.07 benign(0.001) TCGA-49-6744-01 2 40656903 40656903 C A SLC8A1 Missense_Mutation p.G173V 0.12 deleterious(0) probably_damaging(1) TCGA-49-6744-01 2 54122797 54122797 A T PSME4 Silent p.T1255T 0.05 TCGA-49-6744-01 2 69053120 69053120 C A ARHGAP25 Missense_Mutation p.L579I 0.13 tolerated(0.13) probably_damaging(0.985) TCGA-49-6744-01 2 74129498 74129498 G T ACTG2 Silent p.V46V 0.08 TCGA-49-6744-01 2 74129499 74129499 G T ACTG2 Nonsense_Mutation p.G47* 0.06 TCGA-49-6744-01 2 79349965 79349965 A G REG1A Splice_Site p.X108_splice 0.07 TCGA-49-6744-01 2 84518100 84518100 G A FUNDC2P2 RNA 0.06 TCGA-49-6744-01 3 108698378 108698378 G T MORC1 Missense_Mutation p.L821M 0.04 deleterious(0) probably_damaging(1) TCGA-49-6744-01 3 108819311 108819311 C A MORC1 Silent p.R89R 0.08 TCGA-49-6744-01 3 113378249 113378249 A T KIAA2018 Silent p.P760P 0.08 TCGA-49-6744-01 3 119242481 119242481 C G TIMMDC1 Missense_Mutation p.L246V 0.22 tolerated(0.12) benign(0.065) TCGA-49-6744-01 3 121774257 121774257 C T CD86 5'UTR 0.07 TCGA-49-6744-01 3 130095427 130095427 G T COL6A5 Missense_Mutation p.V139L 0.12 deleterious(0.02) probably_damaging(0.927) TCGA-49-6744-01 3 160786690 160786690 C T PPM1L Silent p.N276N 0.06 TCGA-49-6744-01 3 164777707 164777707 C G SI Missense_Mutation p.E377Q 0.06 tolerated(0.55) benign(0.033) TCGA-49-6744-01 3 164906357 164906357 G - SLITRK3 Frame_Shift_Del p.I755Sfs*38 0.13 TCGA-49-6744-01 3 170140986 170140986 G T CLDN11 Missense_Mutation p.A88S 0.10 tolerated(0.57) benign(0.013) TCGA-49-6744-01 3 190967879 190967879 G C OSTN Missense_Mutation p.G124A 0.06 deleterious(0.04) probably_damaging(1) TCGA-49-6744-01 3 196749841 196749841 T A MFI2 Missense_Mutation p.S211C 0.05 deleterious(0) probably_damaging(0.992) TCGA-49-6744-01 3 21706497 21706497 G T ZNF385D Missense_Mutation p.L16I 0.26 tolerated(0.06) possibly_damaging(0.899) TCGA-49-6744-01 3 35833950 35833950 C A ARPP21 Missense_Mutation p.N704K 0.14 tolerated(0.06) benign(0.106) TCGA-49-6744-01 3 44540778 44540778 A T ZNF852 Missense_Mutation p.N497K 0.08 tolerated_low_confidence(0.17) benign(0.002) TCGA-49-6744-01 3 47158152 47158152 C A SETD2 Missense_Mutation p.C1516F 0.11 deleterious(0) probably_damaging(0.993) TCGA-49-6744-01 3 48617237 48617237 C A COL7A1 Missense_Mutation p.G1712V 0.06 unknown(0) TCGA-49-6744-01 3 57303524 57303524 G T ASB14 3'UTR 0.10 TCGA-49-6744-01 3 73651529 73651529 C A PDZRN3 Silent p.L298L 0.05 TCGA-49-6744-01 3 98188926 98188926 G T OR5K1 Missense_Mutation p.C169F 0.03 deleterious(0) probably_damaging(0.999) TCGA-49-6744-01 4 114264221 114264221 C A ANK2 Missense_Mutation p.P1391T 0.09 probably_damaging(1) TCGA-49-6744-01 4 123333934 123333934 C A ADAD1 Missense_Mutation p.Q407K 0.09 tolerated(0.07) possibly_damaging(0.643) TCGA-49-6744-01 4 134072013 134072013 G C PCDH10 Missense_Mutation p.V240L 0.09 deleterious(0) probably_damaging(0.989) TCGA-49-6744-01 4 172735814 172735814 G A GALNTL6 Nonsense_Mutation p.W28* 0.08 TCGA-49-6744-01 4 183652148 183652148 C A TENM3 Silent p.T941T 0.12 TCGA-49-6744-01 4 183652149 183652149 C A TENM3 Missense_Mutation p.L942I 0.12 tolerated(0.49) possibly_damaging(0.636) TCGA-49-6744-01 4 22425944 22425944 T C GPR125 Missense_Mutation p.N492S 0.05 deleterious(0.02) benign(0.178) TCGA-49-6744-01 4 36161127 36161127 C A ARAP2 Missense_Mutation p.A815S 0.11 deleterious(0.05) possibly_damaging(0.841) TCGA-49-6744-01 4 4276496 4276496 C A LYAR Nonsense_Mutation p.E144* 0.06 TCGA-49-6744-01 4 52862092 52862092 C A LRRC66 Missense_Mutation p.G366C 0.07 deleterious(0.01) probably_damaging(0.922) TCGA-49-6744-01 4 52948665 52948665 A T SPATA18 Nonsense_Mutation p.R490* 0.06 TCGA-49-6744-01 4 66230911 66230911 C T EPHA5 Missense_Mutation p.G687D 0.07 deleterious(0) probably_damaging(0.998) TCGA-49-6744-01 4 7043210 7043210 C A CCDC96 Nonsense_Mutation p.E486* 0.15 TCGA-49-6744-01 4 7717039 7717039 G T SORCS2 Splice_Site p.X751_splice 0.06 TCGA-49-6744-01 5 121409740 121409740 G T LOX Missense_Mutation p.H335N 0.09 tolerated(0.12) benign(0.21) TCGA-49-6744-01 5 140215057 140215057 C A PCDHA7 Silent p.A363A 0.04 TCGA-49-6744-01 5 140604625 140604625 C A PCDHB14 Silent p.L516L 0.08 TCGA-49-6744-01 5 140711999 140711999 A T PCDHGA1 Missense_Mutation p.E583V 0.08 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-49-6744-01 5 140774290 140774290 C A PCDHGA8 Missense_Mutation p.A637E 0.12 deleterious_low_confidence(0) possibly_damaging(0.798) TCGA-49-6744-01 5 140774680 140774680 A C PCDHGA8 Missense_Mutation p.H767P 0.14 deleterious_low_confidence(0) benign(0.127) TCGA-49-6744-01 5 145665588 145665588 A G RBM27 Missense_Mutation p.R1060G 0.06 deleterious(0) probably_damaging(0.996) TCGA-49-6744-01 5 23522490 23522490 G A PRDM9 Missense_Mutation p.E196K 0.13 tolerated(0.06) possibly_damaging(0.72) TCGA-49-6744-01 5 38425138 38425138 C A EGFLAM Missense_Mutation p.A585D 0.32 deleterious(0.03) probably_damaging(1) TCGA-49-6744-01 5 5462198 5462198 G A KIAA0947 Silent p.E917E 0.04 TCGA-49-6744-01 5 74655898 74655898 G T HMGCR Missense_Mutation p.G849V 0.08 deleterious(0) probably_damaging(1) TCGA-49-6744-01 5 76342310 76342310 A G AGGF1 Missense_Mutation p.T337A 0.22 tolerated(0.74) benign(0.005) TCGA-49-6744-01 5 80409612 80409612 T C RASGRF2 Silent p.T781T 0.09 TCGA-49-6744-01 5 9063002 9063002 G T SEMA5A Missense_Mutation p.P839T 0.26 tolerated(0.16) probably_damaging(0.987) TCGA-49-6744-01 6 132874369 132874369 G T TAAR8 Missense_Mutation p.V180L 0.18 tolerated(0.28) benign(0.292) TCGA-49-6744-01 6 136599712 136599712 T C BCLAF1 Missense_Mutation p.R103G 0.05 deleterious_low_confidence(0.02) unknown(0) TCGA-49-6744-01 6 137018358 137018358 T A MAP3K5 Missense_Mutation p.Q325L 0.10 deleterious(0.01) possibly_damaging(0.64) TCGA-49-6744-01 6 158923658 158923658 G A TULP4 Missense_Mutation p.R988Q 0.16 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-49-6744-01 6 29141761 29141761 G T OR2J2 Missense_Mutation p.V117L 0.16 tolerated(0.08) benign(0.049) TCGA-49-6744-01 6 292496 292496 C T DUSP22 5'UTR 0.20 TCGA-49-6744-01 6 3225992 3225992 C A TUBB2B Nonsense_Mutation p.E111* 0.21 TCGA-49-6744-01 6 32712989 32712989 G A HLA-DQA2 Missense_Mutation p.G46S 0.16 deleterious(0.04) probably_damaging(1) TCGA-49-6744-01 6 38818065 38818065 A T DNAH8 Silent p.I1529I 0.16 TCGA-49-6744-01 6 41740639 41740639 C A FRS3 Silent p.L104L 0.06 TCGA-49-6744-01 6 51920529 51920529 T C PKHD1 Splice_Site p.X565_splice 0.13 TCGA-49-6744-01 6 69349092 69349092 G T BAI3 Missense_Mutation p.L175F 0.14 tolerated(0.17) probably_damaging(0.979) TCGA-49-6744-01 7 100388611 100388611 G T ZAN Nonsense_Mutation p.G2468* 0.29 TCGA-49-6744-01 7 100457848 100457848 G A SLC12A9 Silent p.L404L 0.18 TCGA-49-6744-01 7 100680748 100680748 C T MUC17 Silent p.T2017T 0.13 TCGA-49-6744-01 7 107399240 107399240 C T CBLL1 Missense_Mutation p.P365S 0.05 tolerated(0.21) benign(0.359) TCGA-49-6744-01 7 110763529 110763529 G C LRRN3 Missense_Mutation p.G234A 0.22 deleterious(0) probably_damaging(1) TCGA-49-6744-01 7 111970197 111970197 A G ZNF277 Missense_Mutation p.M243V 0.15 deleterious(0.03) probably_damaging(0.998) TCGA-49-6744-01 7 128864925 128864925 T A AHCYL2 Missense_Mutation p.V3E 0.29 deleterious_low_confidence(0.01) unknown(0) TCGA-49-6744-01 7 137790082 137790082 G C AKR1D1 Missense_Mutation p.L162F 0.16 deleterious(0) probably_damaging(1) TCGA-49-6744-01 7 141752752 141752752 A T MGAM Missense_Mutation p.T1043S 0.11 tolerated(0.55) benign(0.005) TCGA-49-6744-01 7 142180781 142180781 G T TRBV6-5 Silent p.T26T 0.15 TCGA-49-6744-01 7 142564758 142564758 G T EPHB6 Missense_Mutation p.R561L 0.12 deleterious(0.01) probably_damaging(1) TCGA-49-6744-01 7 142637620 142637620 G C C7orf34 Silent p.G130G 0.06 TCGA-49-6744-01 7 143632883 143632883 G T OR2F2 Missense_Mutation p.R186S 0.04 deleterious(0.01) possibly_damaging(0.908) TCGA-49-6744-01 7 143633190 143633190 A C OR2F2 Missense_Mutation p.I289L 0.09 deleterious(0) probably_damaging(0.995) TCGA-49-6744-01 7 146741008 146741008 G T CNTNAP2 Nonsense_Mutation p.G138* 0.15 TCGA-49-6744-01 7 146829427 146829427 C A CNTNAP2 Missense_Mutation p.Q392K 0.13 tolerated(0.83) benign(0.01) TCGA-49-6744-01 7 147259256 147259256 T A CNTNAP2 Missense_Mutation p.Y602N 0.12 deleterious(0) probably_damaging(0.98) TCGA-49-6744-01 7 147914435 147914435 A G CNTNAP2 Silent p.P1022P 0.16 TCGA-49-6744-01 7 149425649 149425649 G A KRBA1 Missense_Mutation p.E504K 0.06 deleterious(0) probably_damaging(0.953) TCGA-49-6744-01 7 150217081 150217081 C A GIMAP7 Missense_Mutation p.R7S 0.08 tolerated(0.16) benign(0.002) TCGA-49-6744-01 7 152008931 152008931 C G KMT2C Missense_Mutation p.V231L 0.15 probably_damaging(0.992) TCGA-49-6744-01 7 23296802 23296802 T A GPNMB Intron 0.13 TCGA-49-6744-01 7 27204508 27204508 G C HOXA9 Missense_Mutation p.P190R 0.16 tolerated(0.46) benign(0.063) TCGA-49-6744-01 7 39500186 39500186 G C POU6F2 Silent p.L481L 0.19 TCGA-49-6744-01 7 53104090 53104090 C A POM121L12 Silent p.P242P 0.12 TCGA-49-6744-01 7 62752474 62752474 C A ZNF733P RNA 0.11 TCGA-49-6744-01 7 86526823 86526823 T G KIAA1324L Missense_Mutation p.Q895P 0.04 deleterious(0) probably_damaging(0.972) TCGA-49-6744-01 7 99474394 99474394 C A OR2AE1 Missense_Mutation p.G88V 0.18 deleterious(0) probably_damaging(1) TCGA-49-6744-01 8 100520069 100520069 G T VPS13B Missense_Mutation p.R1410I 0.07 deleterious(0) possibly_damaging(0.766) TCGA-49-6744-01 8 108306234 108306234 C A ANGPT1 Missense_Mutation p.G323V 0.05 deleterious(0) probably_damaging(1) TCGA-49-6744-01 8 114448979 114448979 C A CSMD3 Missense_Mutation p.M35I 0.10 tolerated_low_confidence(0.74) benign(0) TCGA-49-6744-01 8 114449164 114449164 G C CSMD3 5'UTR 0.11 TCGA-49-6744-01 8 139151231 139151231 G C FAM135B Missense_Mutation p.T1300R 0.19 deleterious(0.01) probably_damaging(0.954) TCGA-49-6744-01 8 144698279 144698279 G A TSTA3 Silent p.F86F 0.08 TCGA-49-6744-01 8 18393390 18393390 C A PSD3 Missense_Mutation p.A1003S 0.06 tolerated(0.76) benign(0.016) TCGA-49-6744-01 8 21996976 21996976 G T REEP4 Silent p.R124R 0.17 TCGA-49-6744-01 8 41550708 41550708 G T ANK1 Missense_Mutation p.Q1223K 0.09 tolerated(0.11) benign(0.094) TCGA-49-6744-01 8 77766156 77766156 G T ZFHX4 Missense_Mutation p.K2333N 0.14 probably_damaging(0.991) TCGA-49-6744-01 8 97892129 97892129 G T CPQ Missense_Mutation p.G249W 0.12 deleterious(0) probably_damaging(0.999) TCGA-49-6744-01 9 116041389 116041389 G T PRPF4 Missense_Mutation p.G125C 0.12 deleterious(0) possibly_damaging(0.894) TCGA-49-6744-01 9 130829231 130829231 G A NAIF1 Silent p.G50G 0.16 TCGA-49-6744-01 9 35606261 35606261 A T TESK1 Silent p.G123G 0.10 TCGA-49-6744-01 9 43625022 43625022 G T SPATA31A6 Missense_Mutation p.A1222E 0.05 tolerated(0.39) benign(0.004) TCGA-49-6744-01 9 77377968 77377968 G A TRPM6 Nonsense_Mutation p.Q1207* 0.14 TCGA-49-6744-01 9 92002517 92002517 C T SEMA4D Missense_Mutation p.D372N 0.08 tolerated(1) benign(0.004) TCGA-49-6744-01 X 10092351 10092351 G C WWC3 Missense_Mutation p.G600R 0.09 tolerated(0.2) benign(0.096) TCGA-49-6744-01 X 101910104 101910104 C A GPRASP1 Silent p.A421A 0.19 TCGA-49-6744-01 X 104440287 104440287 G T IL1RAPL2 Silent p.G71G 0.22 TCGA-49-6744-01 X 107827715 107827715 G T COL4A5 Missense_Mutation p.G331V 0.09 unknown(0) TCGA-49-6744-01 X 119505001 119505001 C G ATP1B4 Missense_Mutation p.N166K 0.05 tolerated(0.34) probably_damaging(0.932) TCGA-49-6744-01 X 119668355 119668355 G T CUL4B Silent p.I767I 0.12 TCGA-49-6744-01 X 12828215 12828215 C A PRPS2 Silent p.A163A 0.07 TCGA-49-6744-01 X 135430312 135430312 G T GPR112 Missense_Mutation p.D1483Y 0.07 deleterious(0) probably_damaging(0.925) TCGA-49-6744-01 X 151336800 151336800 C A GABRA3 Missense_Mutation p.R460L 0.22 deleterious(0) probably_damaging(1) TCGA-49-6744-01 X 153135357 153135357 G T L1CAM Missense_Mutation p.H342N 0.18 tolerated(0.4) benign(0.063) TCGA-49-6744-01 X 27765783 27765783 G C DCAF8L2 Missense_Mutation p.W257C 0.19 deleterious(0) probably_damaging(0.999) TCGA-49-6744-01 X 29301283 29301283 G T IL1RAPL1 Missense_Mutation p.W104L 0.08 deleterious(0) probably_damaging(0.986) TCGA-49-6744-01 X 34148334 34148334 C A FAM47A Missense_Mutation p.A688S 0.04 tolerated(0.35) probably_damaging(0.984) TCGA-49-6744-01 X 36162841 36162842 - T CHDC2 Frame_Shift_Ins p.L476Ffs*38 0.21 TCGA-49-6744-01 X 37969676 37969676 C A SYTL5 Missense_Mutation p.P535T 0.07 tolerated(0.27) benign(0.069) TCGA-49-6744-01 X 48053613 48053613 C A SSX5 Missense_Mutation p.D119Y 0.05 deleterious(0) probably_damaging(0.991) TCGA-49-6744-01 X 54259271 54259271 G T WNK3 Missense_Mutation p.T1604K 0.08 deleterious_low_confidence(0.04) possibly_damaging(0.477) TCGA-49-6744-01 X 71349932 71349932 C A RGAG4 Missense_Mutation p.G487C 0.21 deleterious_low_confidence(0) unknown(0) TCGA-49-6744-01 X 83128659 83128659 A G CYLC1 Missense_Mutation p.K315E 0.18 tolerated(0.13) unknown(0) TCGA-49-6744-01 X 83730391 83730391 A T HDX Silent p.S5S 0.08 TCGA-49-6744-01 X 8433568 8433568 C A VCX3B Missense_Mutation p.P26Q 0.12 tolerated_low_confidence(0.16) unknown(0) TCGA-49-6745-01 10 105361458 105361458 T C SH3PXD2A 3'UTR 0.29 TCGA-49-6745-01 10 105727608 105727608 G C SLK Missense_Mutation p.E35D 0.04 tolerated(0.13) probably_damaging(0.996) TCGA-49-6745-01 10 124248444 124248444 C T HTRA1 Missense_Mutation p.H167Y 0.17 tolerated(1) benign(0.002) TCGA-49-6745-01 10 27382712 27382712 C G ANKRD26 Missense_Mutation p.A87P 0.21 deleterious(0) probably_damaging(1) TCGA-49-6745-01 10 30740626 30740626 C T MAP3K8 Nonsense_Mutation p.Q276* 0.21 TCGA-49-6745-01 10 43615593 43615593 C A RET Nonsense_Mutation p.S891* 0.20 TCGA-49-6745-01 10 48429252 48429252 C T GDF10 Missense_Mutation p.A212T 0.14 tolerated(0.11) possibly_damaging(0.761) TCGA-49-6745-01 10 5138718 5138718 C G AKR1C3 Missense_Mutation p.S67R 0.21 tolerated(0.07) benign(0.185) TCGA-49-6745-01 10 7658063 7658063 T C ITIH5 Splice_Site p.X275_splice 0.17 TCGA-49-6745-01 10 81037046 81037046 G A ZMIZ1 Missense_Mutation p.S130N 0.16 benign(0) TCGA-49-6745-01 11 103907482 103907482 C A DDI1 5'UTR 0.18 TCGA-49-6745-01 11 126135202 126135202 G A SRPR Silent p.C424C 0.15 TCGA-49-6745-01 11 20178619 20178619 C G DBX1 Missense_Mutation p.K212N 0.27 deleterious(0.04) possibly_damaging(0.676) TCGA-49-6745-01 11 46958352 46958352 A G C11orf49 5'UTR 0.15 TCGA-49-6745-01 11 55658753 55658753 C G TRIM51 Missense_Mutation p.A335G 0.19 tolerated(0.29) benign(0.017) TCGA-49-6745-01 11 6413070 6413070 C G SMPD1 Missense_Mutation p.L259V 0.21 tolerated(0.74) benign(0.091) TCGA-49-6745-01 11 64956054 64956054 C T CAPN1 Intron 0.15 TCGA-49-6745-01 12 123950180 123950180 C T SNRNP35 Silent p.V36V 0.29 TCGA-49-6745-01 12 18234236 18234236 G C RERGL Missense_Mutation p.I169M 0.06 deleterious(0.04) possibly_damaging(0.76) TCGA-49-6745-01 12 21526328 21526328 G A IAPP Missense_Mutation p.V15I 0.06 tolerated(0.14) benign(0.011) TCGA-49-6745-01 12 26629850 26629850 C G ITPR2 Missense_Mutation p.E2072Q 0.05 tolerated(0.92) benign(0.061) TCGA-49-6745-01 12 40012767 40012767 G T ABCD2 Missense_Mutation p.F217L 0.31 tolerated(0.08) probably_damaging(0.989) TCGA-49-6745-01 12 40734215 40734215 A G LRRK2 Missense_Mutation p.Y2023C 0.12 deleterious(0.03) probably_damaging(1) TCGA-49-6745-01 12 41463834 41463834 C T CNTN1 Silent p.F1018F 0.09 TCGA-49-6745-01 12 49485111 49485111 C T DHH Missense_Mutation p.R122H 0.07 tolerated(0.07) possibly_damaging(0.658) TCGA-49-6745-01 12 52793813 52793813 C T KRT82 Missense_Mutation p.A300T 0.26 deleterious(0.01) benign(0.037) TCGA-49-6745-01 12 53774039 53774039 G C SP1 5'UTR 0.18 TCGA-49-6745-01 12 55886877 55886877 G A OR6C68 Missense_Mutation p.C239Y 0.16 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-49-6745-01 12 56630228 56630228 C T SLC39A5 Missense_Mutation p.P332S 0.23 tolerated(0.24) possibly_damaging(0.661) TCGA-49-6745-01 12 57118314 57118314 G A NACA Intron 0.31 TCGA-49-6745-01 12 57118315 57118315 A C NACA Intron 0.30 TCGA-49-6745-01 12 58007229 58007229 G T ARHGEF25 Nonsense_Mutation p.E178* 0.03 TCGA-49-6745-01 12 58140859 58140859 C T TSPAN31 Missense_Mutation p.S168L 0.03 tolerated(0.44) possibly_damaging(0.622) TCGA-49-6745-01 12 6976727 6976727 C T TPI1 Silent p.S36S 0.19 TCGA-49-6745-01 12 7076633 7076633 G C PHB2 Intron 0.23 TCGA-49-6745-01 12 71977945 71977945 G A LGR5 Missense_Mutation p.E719K 0.08 tolerated(0.27) benign(0.012) TCGA-49-6745-01 12 75672620 75672620 C G CAPS2 Intron 0.09 TCGA-49-6745-01 13 101756652 101756652 T C NALCN Missense_Mutation p.I961M 0.12 deleterious(0) probably_damaging(0.996) TCGA-49-6745-01 13 111088678 111088678 G A COL4A2 Silent p.A263A 0.23 TCGA-49-6745-01 13 111290626 111290626 G C CARKD Missense_Mutation p.E311Q 0.10 tolerated_low_confidence(0.33) benign(0.003) TCGA-49-6745-01 13 41941661 41941661 G C NAA16 Missense_Mutation p.L542F 0.10 deleterious(0) probably_damaging(1) TCGA-49-6745-01 14 102449530 102449530 G A DYNC1H1 Missense_Mutation p.R379H 0.20 benign(0.086) TCGA-49-6745-01 14 102495993 102495993 G A DYNC1H1 Missense_Mutation p.E3196K 0.18 probably_damaging(0.91) TCGA-49-6745-01 14 21870611 21870611 G A CHD8 Missense_Mutation p.R1256C 0.11 deleterious(0) probably_damaging(0.988) TCGA-49-6745-01 14 53331254 53331254 A C FERMT2 Silent p.V489V 0.15 TCGA-49-6745-01 14 57684737 57684737 C G EXOC5 Missense_Mutation p.E526Q 0.15 deleterious(0.01) possibly_damaging(0.854) TCGA-49-6745-01 14 94089157 94089157 C T UNC79 Silent p.L1683L 0.09 TCGA-49-6745-01 15 42003303 42003303 C G MGA Nonsense_Mutation p.S947* 0.27 TCGA-49-6745-01 15 83926860 83926860 G T BNC1 Missense_Mutation p.N773K 0.17 deleterious(0) benign(0.403) TCGA-49-6745-01 16 15222101 15222101 C A RP11-1186N24.5 RNA 0.15 TCGA-49-6745-01 16 15817981 15817981 T C NDE1 Intron 0.14 TCGA-49-6745-01 16 20335277 20335277 G A GP2 Silent p.I132I 0.19 TCGA-49-6745-01 16 24981885 24981885 G A ARHGAP17 Missense_Mutation p.T72I 0.19 deleterious(0.01) possibly_damaging(0.823) TCGA-49-6745-01 16 69148849 69148850 - C HAS3 Frame_Shift_Ins p.S449Qfs*59 0.08 TCGA-49-6745-01 17 18025526 18025526 C T MYO15A Nonsense_Mutation p.Q1138* 0.26 TCGA-49-6745-01 17 37118263 37118263 T G FBXO47 Silent p.T73T 0.22 TCGA-49-6745-01 17 46233853 46233853 G A SKAP1 Intron 0.28 TCGA-49-6745-01 17 56274464 56274464 G A EPX Silent p.S322S 0.18 TCGA-49-6745-01 17 58979978 58979978 C G BCAS3 Intron 0.15 TCGA-49-6745-01 17 7350939 7350939 G A CHRNB1 Missense_Mutation p.E194K 0.15 tolerated(0.17) possibly_damaging(0.718) TCGA-49-6745-01 17 73663525 73663525 G C SAP30BP Missense_Mutation p.E25Q 0.04 deleterious_low_confidence(0.01) possibly_damaging(0.899) TCGA-49-6745-01 18 45368254 45368254 C T SMAD2 Missense_Mutation p.D450N 0.11 deleterious(0) probably_damaging(0.999) TCGA-49-6745-01 19 46443408 46443408 C G NOVA2 Missense_Mutation p.E398Q 0.12 tolerated(0.12) possibly_damaging(0.714) TCGA-49-6745-01 19 55341715 55341715 T A KIR3DL1 Silent p.V440V 0.12 TCGA-49-6745-01 19 56736297 56736297 G A ZSCAN5A Missense_Mutation p.P40L 0.23 tolerated(0.43) probably_damaging(1) TCGA-49-6745-01 19 58102051 58102051 G A ZIK1 Missense_Mutation p.G291E 0.18 deleterious(0) probably_damaging(1) TCGA-49-6745-01 19 9047598 9047598 C G MUC16 Missense_Mutation p.E11345Q 0.05 benign(0.016) TCGA-49-6745-01 19 9296806 9296806 G A OR7D2 Missense_Mutation p.V117M 0.08 tolerated_low_confidence(0.08) benign(0.104) TCGA-49-6745-01 1 100346852 100346852 C T AGL Missense_Mutation p.S669L 0.16 deleterious(0.01) benign(0.322) TCGA-49-6745-01 1 100346961 100346961 C A AGL Silent p.I705I 0.18 TCGA-49-6745-01 1 110168292 110168292 C G AMPD2 Missense_Mutation p.F131L 0.15 tolerated(0.11) benign(0.009) TCGA-49-6745-01 1 171506560 171506560 G A PRRC2C Missense_Mutation p.E816K 0.25 unknown(0) TCGA-49-6745-01 1 185153948 185153948 A G SWT1 Silent p.L438L 0.21 TCGA-49-6745-01 1 228646248 228646248 C T HIST3H2BB 3'UTR 0.16 TCGA-49-6745-01 1 247588432 247588432 G A NLRP3 Missense_Mutation p.E563K 0.12 tolerated(0.23) probably_damaging(0.935) TCGA-49-6745-01 20 18432608 18432608 T A DZANK1 Intron 0.10 TCGA-49-6745-01 20 47269227 47269227 G T PREX1 Silent p.I788I 0.14 TCGA-49-6745-01 20 59829940 59829940 A T CDH4 Missense_Mutation p.D39V 0.05 tolerated(0.3) benign(0.005) TCGA-49-6745-01 20 60498691 60498691 C T CDH4 Silent p.G519G 0.27 TCGA-49-6745-01 21 11039153 11039153 T C BAGE2 RNA 0.04 TCGA-49-6745-01 21 37661075 37661077 GAA - DOPEY2 In_Frame_Del p.E2108del 0.18 TCGA-49-6745-01 21 47805840 47805840 G A PCNT Missense_Mutation p.E1136K 0.10 possibly_damaging(0.636) TCGA-49-6745-01 22 40015399 40015399 C G CACNA1I Missense_Mutation p.I189M 0.20 deleterious(0) probably_damaging(0.952) TCGA-49-6745-01 22 50553671 50553671 G T MOV10L1 Nonsense_Mutation p.G419* 0.15 TCGA-49-6745-01 2 138000026 138000026 G A THSD7B Splice_Site p.X717_splice 0.07 TCGA-49-6745-01 2 160825826 160825826 C T PLA2R1 Missense_Mutation p.G902E 0.21 tolerated(0.61) benign(0.042) TCGA-49-6745-01 2 179644903 179644903 G A TTN Nonsense_Mutation p.Q1185* 0.09 TCGA-49-6745-01 2 207621660 207621660 C T MDH1B Silent p.L125L 0.13 TCGA-49-6745-01 2 213886806 213886806 C T IKZF2 Missense_Mutation p.R208H 0.18 deleterious(0.03) probably_damaging(0.996) TCGA-49-6745-01 2 220355150 220355150 C T SPEG Nonsense_Mutation p.R2981* 0.10 TCGA-49-6745-01 2 220480797 220480797 G A STK11IP Missense_Mutation p.R1061H 0.17 tolerated(0.14) benign(0.016) TCGA-49-6745-01 2 27587635 27587635 T C EIF2B4 Missense_Mutation p.Y461C 0.19 deleterious(0) probably_damaging(0.998) TCGA-49-6745-01 2 3744967 3744967 G A ALLC Silent p.P257P 0.21 TCGA-49-6745-01 2 39234206 39234206 G A SOS1 Missense_Mutation p.S880L 0.21 deleterious(0) probably_damaging(1) TCGA-49-6745-01 2 44051398 44051398 C G ABCG5 Missense_Mutation p.D360H 0.14 deleterious(0) possibly_damaging(0.863) TCGA-49-6745-01 2 44051514 44051514 C G ABCG5 Missense_Mutation p.R321T 0.11 deleterious(0) probably_damaging(0.938) TCGA-49-6745-01 2 80085262 80085262 C T CTNNA2 Missense_Mutation p.A141V 0.11 deleterious(0) probably_damaging(0.994) TCGA-49-6745-01 2 86406604 86406604 C T IMMT Silent p.E87E 0.12 TCGA-49-6745-01 3 119367417 119367417 G A POPDC2 Silent p.F233F 0.15 TCGA-49-6745-01 3 152177135 152177136 GT - MBNL1 Splice_Site 0.18 TCGA-49-6745-01 3 154027503 154027503 C T DHX36 Missense_Mutation p.R251K 0.14 tolerated(0.41) benign(0.026) TCGA-49-6745-01 3 196051381 196051381 C T TM4SF19 Intron 0.31 TCGA-49-6745-01 3 44635871 44635871 T A ZNF660 Missense_Mutation p.S62R 0.11 tolerated(0.12) benign(0.164) TCGA-49-6745-01 3 47545917 47545917 G A ELP6 Missense_Mutation p.R76W 0.12 deleterious(0.02) benign(0.159) TCGA-49-6745-01 3 52825981 52825981 C T ITIH1 3'UTR 0.28 TCGA-49-6745-01 3 69073259 69073259 C T TMF1 Missense_Mutation p.D1029N 0.09 deleterious(0) probably_damaging(0.995) TCGA-49-6745-01 3 77637907 77637907 C T ROBO2 Missense_Mutation p.R852C 0.18 tolerated(0.18) possibly_damaging(0.689) TCGA-49-6745-01 3 78988027 78988027 A G ROBO1 Missense_Mutation p.S75P 0.18 tolerated(0.23) possibly_damaging(0.886) TCGA-49-6745-01 4 119951360 119951360 G C SYNPO2 Missense_Mutation p.R477T 0.15 tolerated(0.26) benign(0.205) TCGA-49-6745-01 4 120221707 120221707 C T C4orf3 Missense_Mutation p.R128Q 0.16 tolerated_low_confidence(0.05) benign(0.008) TCGA-49-6745-01 4 40356452 40356452 C T CHRNA9 Missense_Mutation p.A452V 0.06 deleterious(0) probably_damaging(1) TCGA-49-6745-01 4 5800411 5800411 G A EVC Silent p.V732V 0.20 TCGA-49-6745-01 4 68380366 68380366 C T CENPC Silent p.S290S 0.23 TCGA-49-6745-01 4 69416591 69416591 T A UGT2B17 Missense_Mutation p.I373L 0.19 deleterious(0.03) possibly_damaging(0.656) TCGA-49-6745-01 4 86916545 86916545 G A ARHGAP24 Missense_Mutation p.E580K 0.05 tolerated(0.18) possibly_damaging(0.872) TCGA-49-6745-01 5 118485852 118485852 G C DMXL1 Missense_Mutation p.D1444H 0.24 deleterious(0.01) probably_damaging(0.93) TCGA-49-6745-01 5 1339046 1339046 C T CLPTM1L Silent p.L176L 0.13 TCGA-49-6745-01 5 156589882 156589882 G T FAM71B Missense_Mutation p.S465Y 0.13 deleterious(0) probably_damaging(0.975) TCGA-49-6745-01 5 169661199 169661199 A C C5orf58 Missense_Mutation p.L20F 0.34 tolerated(0.32) probably_damaging(0.934) TCGA-49-6745-01 5 176636857 176636857 C G NSD1 Missense_Mutation p.S486C 0.06 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-49-6745-01 5 21459805 21459805 C T GUSBP1 RNA 0.17 TCGA-49-6745-01 5 40692192 40692192 G C PTGER4 Missense_Mutation p.Q393H 0.06 deleterious(0.03) benign(0.023) TCGA-49-6745-01 6 105581342 105581342 C G BVES Missense_Mutation p.W37C 0.10 deleterious(0) probably_damaging(0.971) TCGA-49-6745-01 6 147703982 147703982 G A STXBP5 Missense_Mutation p.E1088K 0.11 deleterious(0) possibly_damaging(0.881) TCGA-49-6745-01 6 152746553 152746553 C T SYNE1 Missense_Mutation p.E1744K 0.09 benign(0.002) TCGA-49-6745-01 6 27861501 27861501 C G HIST1H2BO Silent p.R87R 0.04 TCGA-49-6745-01 6 31901414 31901414 C T CFB Missense_Mutation p.S95L 0.22 tolerated(0.11) benign(0.018) TCGA-49-6745-01 6 3225994 3225994 G C TUBB2B Missense_Mutation p.A110G 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.482) TCGA-49-6745-01 6 33655052 33655052 C T ITPR3 Missense_Mutation p.S2042L 0.35 tolerated(0.13) benign(0.018) TCGA-49-6745-01 6 38905910 38905910 C G DNAH8 Silent p.L3691L 0.11 TCGA-49-6745-01 6 43480052 43480052 C T YIPF3 Silent p.G302G 0.24 TCGA-49-6745-01 6 74189769 74189769 C G MTO1 Missense_Mutation p.S350C 0.18 deleterious(0.04) possibly_damaging(0.601) TCGA-49-6745-01 6 83767714 83767714 C T UBE3D Missense_Mutation p.M35I 0.10 tolerated(0.14) benign(0.029) TCGA-49-6745-01 6 86248583 86248583 C G SNX14 Splice_Site p.X483_splice 0.05 TCGA-49-6745-01 6 86325015 86325015 C G SYNCRIP Missense_Mutation p.R444T 0.16 tolerated(0.39) unknown(0) TCGA-49-6745-01 6 90449994 90449994 G A MDN1 Silent p.L1518L 0.06 TCGA-49-6745-01 7 105664964 105664964 C T CDHR3 Silent p.I738I 0.12 TCGA-49-6745-01 7 116412044 116412044 G T MET Splice_Site p.X1028_splice 0.34 TCGA-49-6745-01 7 117234984 117234984 G C CFTR Missense_Mutation p.E831Q 0.11 tolerated(0.25) benign(0.063) TCGA-49-6745-01 7 117235031 117235031 G A CFTR Nonsense_Mutation p.W846* 0.08 TCGA-49-6745-01 7 131815181 131815181 T G PLXNA4 3'UTR 0.24 TCGA-49-6745-01 7 131849960 131849960 C T PLXNA4 Splice_Site p.X1429_splice 0.09 TCGA-49-6745-01 7 138764365 138764365 G A ZC3HAV1 Missense_Mutation p.S441F 0.06 deleterious(0.01) possibly_damaging(0.462) TCGA-49-6745-01 7 141747587 141747587 G A MGAM Missense_Mutation p.R834Q 0.11 deleterious(0) probably_damaging(0.977) TCGA-49-6745-01 7 142609675 142609675 C A TRPV5 Missense_Mutation p.Q587H 0.08 tolerated(1) benign(0.001) TCGA-49-6745-01 7 143772003 143772003 G A OR2A25 Missense_Mutation p.E231K 0.17 deleterious(0.04) benign(0.053) TCGA-49-6745-01 7 148863295 148863295 G A ZNF398 Missense_Mutation p.E156K 0.26 tolerated(0.08) probably_damaging(0.998) TCGA-49-6745-01 7 148876534 148876534 G C ZNF398 Missense_Mutation p.E524Q 0.05 tolerated(0.17) probably_damaging(0.997) TCGA-49-6745-01 7 23872018 23872018 T A STK31 3'UTR 0.34 TCGA-49-6745-01 7 50070765 50070765 G C ZPBP Missense_Mutation p.S210C 0.07 deleterious(0.02) possibly_damaging(0.868) TCGA-49-6745-01 7 73152108 73152108 C T ABHD11 Intron 0.28 TCGA-49-6745-01 7 82578974 82578974 C T PCLO Missense_Mutation p.E3644K 0.07 unknown(0) TCGA-49-6745-01 7 83636683 83636683 G T SEMA3A Missense_Mutation p.P376T 0.41 deleterious(0) probably_damaging(0.995) TCGA-49-6745-01 7 91729097 91729097 G A AKAP9 Missense_Mutation p.E3604K 0.10 possibly_damaging(0.661) TCGA-49-6745-01 7 99621184 99621184 G A ZKSCAN1 Missense_Mutation p.E19K 0.08 tolerated(0.08) benign(0.108) TCGA-49-6745-01 8 100026130 100026130 C A VPS13B Missense_Mutation p.S38R 0.18 deleterious(0) benign(0.218) TCGA-49-6745-01 8 41791408 41791408 G A KAT6A Nonsense_Mutation p.Q1444* 0.07 TCGA-49-6745-01 8 42163879 42163879 G C IKBKB Missense_Mutation p.D166H 0.07 deleterious(0) probably_damaging(0.983) TCGA-49-6745-01 8 59058927 59058927 G A FAM110B Silent p.K46K 0.09 TCGA-49-6745-01 8 61754493 61754493 G A CHD7 Missense_Mutation p.D1578N 0.15 possibly_damaging(0.701) TCGA-49-6745-01 8 77616334 77616334 G A ZFHX4 Missense_Mutation p.C4Y 0.13 possibly_damaging(0.588) TCGA-49-6745-01 9 104171293 104171293 C G ZNF189 Missense_Mutation p.L415V 0.21 deleterious(0.03) possibly_damaging(0.869) TCGA-49-6745-01 9 123917162 123917162 G A CNTRL Missense_Mutation p.E1446K 0.11 probably_damaging(0.947) TCGA-49-6745-01 9 131028134 131028134 G A GOLGA2 Silent p.L226L 0.06 TCGA-49-6745-01 9 131219695 131219695 C T ODF2 Missense_Mutation p.S4L 0.08 deleterious_low_confidence(0) benign(0.142) TCGA-49-6745-01 9 131810777 131810777 G C FAM73B Missense_Mutation p.E127Q 0.07 tolerated(0.41) possibly_damaging(0.703) TCGA-49-6745-01 9 14819377 14819377 G A FREM1 Silent p.L801L 0.06 TCGA-49-6745-01 9 18777140 18777140 C T ADAMTSL1 Silent p.P971P 0.17 TCGA-49-6745-01 9 21384775 21384775 C T IFNA2 Missense_Mutation p.R185K 0.09 tolerated(0.16) benign(0.039) TCGA-49-6745-01 9 35739760 35739760 C G GBA2 Missense_Mutation p.E483Q 0.08 deleterious(0.03) probably_damaging(0.994) TCGA-49-6745-01 X 105153377 105153377 C G NRK Missense_Mutation p.R583G 0.25 deleterious(0.02) benign(0.185) TCGA-49-6745-01 X 125686524 125686524 G A DCAF12L1 Missense_Mutation p.S23L 0.35 deleterious(0.01) possibly_damaging(0.504) TCGA-49-6745-01 X 154157942 154157942 C G F8 Missense_Mutation p.D1375H 0.06 tolerated(0.06) benign(0.033) TCGA-49-6761-01 10 105349409 105349409 C G NEURL1 Missense_Mutation p.S493C 0.09 deleterious(0.01) possibly_damaging(0.806) TCGA-49-6761-01 10 115922598 115922598 C G C10orf118 Missense_Mutation p.D144H 0.11 deleterious_low_confidence(0.02) benign(0.159) TCGA-49-6761-01 10 118306878 118306878 C A PNLIP Missense_Mutation p.P40H 0.08 deleterious(0.04) probably_damaging(0.995) TCGA-49-6761-01 10 1405829 1405829 C T ADARB2 Silent p.A157A 0.13 TCGA-49-6761-01 10 1405830 1405830 G T ADARB2 Missense_Mutation p.A157E 0.13 tolerated(0.1) probably_damaging(0.968) TCGA-49-6761-01 10 25887907 25887907 G T GPR158 Nonsense_Mutation p.E1118* 0.09 TCGA-49-6761-01 10 26414396 26414396 G A MYO3A Missense_Mutation p.R658K 0.09 tolerated(0.06) possibly_damaging(0.585) TCGA-49-6761-01 10 27060003 27060003 C A ABI1 Splice_Site p.X159_splice 0.17 TCGA-49-6761-01 10 30615549 30615549 G A MTPAP Silent p.L266L 0.13 TCGA-49-6761-01 10 55755520 55755520 C T PCDH15 Missense_Mutation p.M919I 0.31 deleterious(0.01) possibly_damaging(0.837) TCGA-49-6761-01 10 70641845 70641845 C T STOX1 Missense_Mutation p.R148C 0.15 deleterious(0) benign(0.082) TCGA-49-6761-01 10 70706252 70706252 G A DDX50 Missense_Mutation p.G694S 0.10 tolerated(0.1) unknown(0) TCGA-49-6761-01 10 76910337 76910337 A G SAMD8 Silent p.V17V 0.24 TCGA-49-6761-01 10 79553773 79553773 G T DLG5 Nonsense_Mutation p.Y1883* 0.12 TCGA-49-6761-01 10 84744862 84744862 C T NRG3 Missense_Mutation p.S531F 0.26 deleterious(0.01) probably_damaging(0.943) TCGA-49-6761-01 10 93320 93320 T A TUBB8 Missense_Mutation p.S338C 0.27 deleterious_low_confidence(0) benign(0.157) TCGA-49-6761-01 11 101323821 101323821 A - TRPC6 Frame_Shift_Del p.K888Sfs*22 0.12 TCGA-49-6761-01 11 101786027 101786027 G A KIAA1377 Silent p.G4G 0.10 TCGA-49-6761-01 11 16863240 16863240 G C PLEKHA7 Missense_Mutation p.I242M 0.06 deleterious(0) possibly_damaging(0.707) TCGA-49-6761-01 11 18110877 18110877 C A SAAL1 Missense_Mutation p.R257L 0.19 deleterious(0.02) possibly_damaging(0.838) TCGA-49-6761-01 11 32610279 32610279 G A EIF3M Splice_Site p.X105_splice 0.24 TCGA-49-6761-01 11 47754218 47754218 C G FNBP4 Missense_Mutation p.R564P 0.12 deleterious(0) probably_damaging(0.998) TCGA-49-6761-01 11 55339900 55339900 C A OR4C16 Silent p.V99V 0.13 TCGA-49-6761-01 11 62591939 62591939 C G STX5 Missense_Mutation p.D260H 0.10 deleterious(0) probably_damaging(0.937) TCGA-49-6761-01 11 65113187 65113187 C T DPF2 Missense_Mutation p.H230Y 0.10 deleterious(0) benign(0.257) TCGA-49-6761-01 11 66460088 66460088 C T SPTBN2 Silent p.L1703L 0.12 TCGA-49-6761-01 11 70332188 70332188 C A SHANK2 Missense_Mutation p.D1405Y 0.13 deleterious(0) possibly_damaging(0.861) TCGA-49-6761-01 12 106853102 106853102 A T POLR3B Silent p.G842G 0.10 TCGA-49-6761-01 12 111742083 111742083 C A CUX2 Missense_Mutation p.R275S 0.27 deleterious(0.02) possibly_damaging(0.575) TCGA-49-6761-01 12 123900278 123900278 T C RILPL2 3'UTR 0.17 TCGA-49-6761-01 12 124274575 124274575 C T DNAH10 Silent p.V513V 0.12 TCGA-49-6761-01 12 52314550 52314550 C G ACVRL1 Nonsense_Mutation p.S462* 0.12 TCGA-49-6761-01 12 52565271 52565271 G A KRT80 Nonsense_Mutation p.R424* 0.14 TCGA-49-6761-01 12 541095 541095 G C CCDC77 Missense_Mutation p.R216T 0.13 tolerated(0.18) benign(0.206) TCGA-49-6761-01 12 56712094 56712094 G A PAN2 Silent p.L1167L 0.18 TCGA-49-6761-01 12 58135919 58135920 - A AGAP2 5'Flank 0.30 TCGA-49-6761-01 12 69783951 69783951 G C YEATS4 Missense_Mutation p.R180T 0.14 tolerated(0.21) benign(0.001) TCGA-49-6761-01 12 69784076 69784076 G A YEATS4 Missense_Mutation p.D222N 0.10 tolerated_low_confidence(0.2) benign(0.001) TCGA-49-6761-01 12 71978333 71978333 G A LGR5 Missense_Mutation p.S848N 0.05 deleterious(0.05) possibly_damaging(0.829) TCGA-49-6761-01 12 76763510 76763510 G C OSBPL8 Missense_Mutation p.A716G 0.12 tolerated(0.19) benign(0.014) TCGA-49-6761-01 12 78388649 78388649 T A NAV3 Silent p.T246T 0.33 TCGA-49-6761-01 12 88928468 88928468 C A KITLG Intron 0.19 TCGA-49-6761-01 13 109540774 109540774 C T MYO16 Silent p.L514L 0.09 TCGA-49-6761-01 14 101201289 101201289 G A DLK1 3'UTR 0.10 TCGA-49-6761-01 14 105418167 105418167 C G AHNAK2 Missense_Mutation p.K1207N 0.11 possibly_damaging(0.556) TCGA-49-6761-01 14 106667785 106667785 A C IGHV3-20 Missense_Mutation p.D49E 0.10 deleterious_low_confidence(0.01) benign(0.005) TCGA-49-6761-01 14 33014499 33014499 A G AKAP6 Missense_Mutation p.N214D 0.07 tolerated(0.58) benign(0.015) TCGA-49-6761-01 14 60749757 60749757 G A PPM1A Missense_Mutation p.M185I 0.16 tolerated(0.17) benign(0.097) TCGA-49-6761-01 14 64469512 64469512 G A SYNE2 Silent p.K1287K 0.10 TCGA-49-6761-01 14 73029187 73029187 G A RGS6 3'Flank 0.14 TCGA-49-6761-01 14 78189587 78189587 C A SNW1 Missense_Mutation p.R356L 0.27 deleterious(0) probably_damaging(0.978) TCGA-49-6761-01 15 25599501 25599501 T A UBE3A Missense_Mutation p.R788W 0.14 deleterious(0) probably_damaging(0.917) TCGA-49-6761-01 15 38643583 38643583 A C SPRED1 Missense_Mutation p.K351N 0.09 deleterious(0.01) possibly_damaging(0.579) TCGA-49-6761-01 15 43621554 43621554 C A LCMT2 Missense_Mutation p.E378D 0.32 tolerated(0.14) benign(0.006) TCGA-49-6761-01 15 59144100 59144100 C G FAM63B Missense_Mutation p.S558C 0.16 deleterious(0) probably_damaging(0.971) TCGA-49-6761-01 15 71256259 71256259 G T LRRC49 Missense_Mutation p.M308I 0.10 deleterious(0) possibly_damaging(0.462) TCGA-49-6761-01 16 20494500 20494500 G T ACSM2A Splice_Site p.X543_splice 0.14 TCGA-49-6761-01 16 23360085 23360085 C T SCNN1B Silent p.L55L 0.14 TCGA-49-6761-01 16 30490755 30490755 G A ITGAL Missense_Mutation p.M183I 0.12 deleterious(0) benign(0.113) TCGA-49-6761-01 16 31477721 31477721 C G ARMC5 Missense_Mutation p.F773L 0.13 tolerated(0.06) possibly_damaging(0.671) TCGA-49-6761-01 16 49671869 49671869 C A ZNF423 Silent p.R398R 0.12 TCGA-49-6761-01 16 57473209 57473209 T A CIAPIN1 Silent p.S65S 0.32 TCGA-49-6761-01 16 65345333 65345333 G A LINC00922 RNA 0.20 TCGA-49-6761-01 16 7645645 7645645 T C RBFOX1 Splice_Site p.X207_splice 0.05 TCGA-49-6761-01 17 10429036 10429036 C T MYH2 Missense_Mutation p.D1449N 0.13 deleterious(0.02) benign(0.434) TCGA-49-6761-01 17 11631181 11631181 G T DNAH9 Missense_Mutation p.G1919V 0.16 probably_damaging(0.998) TCGA-49-6761-01 17 19470429 19470429 G A SLC47A1 Silent p.L399L 0.12 TCGA-49-6761-01 17 21206516 21206516 C G MAP2K3 Missense_Mutation p.L180V 0.16 deleterious(0) probably_damaging(0.996) TCGA-49-6761-01 17 34923616 34923616 G A GGNBP2 Splice_Site p.X214_splice 0.18 TCGA-49-6761-01 17 4463036 4463036 G A GGT6 Missense_Mutation p.P54S 0.25 tolerated_low_confidence(0.06) benign(0.03) TCGA-49-6761-01 17 53014710 53014710 T A TOM1L1 Intron 0.15 TCGA-49-6761-01 17 56247649 56247649 C G OR4D2 Missense_Mutation p.F211L 0.29 deleterious(0.02) possibly_damaging(0.859) TCGA-49-6761-01 17 63186341 63186341 G C RGS9 Missense_Mutation p.V245L 0.35 deleterious(0.01) benign(0.149) TCGA-49-6761-01 17 72588972 72588972 G A C17orf77 3'UTR 0.22 TCGA-49-6761-01 17 73262754 73262754 C G MIF4GD 3'UTR 0.42 TCGA-49-6761-01 18 14132281 14132281 C T ZNF519 5'UTR 0.11 TCGA-49-6761-01 18 31318481 31318481 G A ASXL3 Silent p.K371K 0.31 TCGA-49-6761-01 18 67687924 67687924 G A RTTN Missense_Mutation p.T2027M 0.10 tolerated(0.1) possibly_damaging(0.708) TCGA-49-6761-01 19 1113547 1113547 T A SBNO2 Missense_Mutation p.Q745L 0.29 deleterious(0) benign(0.139) TCGA-49-6761-01 19 14065430 14065430 A G DCAF15 Missense_Mutation p.H108R 0.13 tolerated(0.39) benign(0.259) TCGA-49-6761-01 19 16633869 16633869 G A CHERP Silent p.L658L 0.11 TCGA-49-6761-01 19 22363504 22363504 A T ZNF676 Missense_Mutation p.C339S 0.22 deleterious(0) probably_damaging(0.998) TCGA-49-6761-01 19 3586648 3586648 G A GIPC3 Silent p.T127T 0.22 TCGA-49-6761-01 19 36883908 36883908 A G ZFP82 Missense_Mutation p.I445T 0.11 tolerated(1) benign(0.201) TCGA-49-6761-01 19 40366480 40366480 G C FCGBP Nonsense_Mutation p.S4585* 0.09 TCGA-49-6761-01 19 41594951 41594951 G A CYP2A13 Missense_Mutation p.G100R 0.16 deleterious(0.01) probably_damaging(1) TCGA-49-6761-01 19 43679469 43679469 T C PSG5 Missense_Mutation p.I288V 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-49-6761-01 19 43679557 43679557 G A PSG5 Silent p.Y258Y 0.15 TCGA-49-6761-01 19 4499589 4499589 G A HDGFRP2 Silent p.Q559Q 0.20 TCGA-49-6761-01 19 49934332 49934332 G A SLC17A7 Silent p.G443G 0.17 TCGA-49-6761-01 19 50655818 50655818 A C IZUMO2 3'UTR 0.14 TCGA-49-6761-01 19 53952852 53952852 G T ZNF761 RNA 0.19 TCGA-49-6761-01 19 53959377 53959377 G C ZNF761 RNA 0.17 TCGA-49-6761-01 19 54778622 54778622 C T LILRB2 Missense_Mutation p.R571K 0.08 tolerated(0.08) benign(0.009) TCGA-49-6761-01 19 58945293 58945293 C G ZNF132 Missense_Mutation p.Q506H 0.15 tolerated(0.05) benign(0.029) TCGA-49-6761-01 19 873486 873486 T A MED16 Missense_Mutation p.D623V 0.32 deleterious(0) probably_damaging(0.942) TCGA-49-6761-01 1 103468348 103468348 C T COL11A1 Splice_Site p.X667_splice 0.17 TCGA-49-6761-01 1 10713525 10713525 C T CASZ1 Missense_Mutation p.M863I 0.09 deleterious_low_confidence(0.02) benign(0.012) TCGA-49-6761-01 1 12941947 12941947 C G PRAMEF4 Silent p.L201L 0.09 TCGA-49-6761-01 1 152777445 152777445 G C LCE1C 3'UTR 0.15 TCGA-49-6761-01 1 154919177 154919177 G A PBXIP1 Missense_Mutation p.R325W 0.53 deleterious(0) possibly_damaging(0.685) TCGA-49-6761-01 1 155240629 155240629 C T CLK2 Missense_Mutation p.R47Q 0.28 tolerated(0.24) unknown(0) TCGA-49-6761-01 1 16945569 16945569 C A RP5-1182A14.5 3'Flank 0.07 TCGA-49-6761-01 1 171679944 171679944 G C VAMP4 Missense_Mutation p.Q59E 0.06 tolerated(0.09) probably_damaging(0.992) TCGA-49-6761-01 1 176563941 176563941 G A PAPPA2 Missense_Mutation p.A401T 0.12 tolerated(0.21) benign(0.125) TCGA-49-6761-01 1 183190037 183190037 C G LAMC2 Missense_Mutation p.A194G 0.06 deleterious(0.01) benign(0.41) TCGA-49-6761-01 1 200817373 200817373 A G CAMSAP2 Missense_Mutation p.I492M 0.32 tolerated(0.15) benign(0.002) TCGA-49-6761-01 1 247836182 247836182 C A OR13G1 Silent p.T54T 0.20 TCGA-49-6761-01 1 34102071 34102071 C T CSMD2 Missense_Mutation p.V1580I 0.11 tolerated(0.79) benign(0.007) TCGA-49-6761-01 1 82417722 82417722 A C LPHN2 Missense_Mutation p.S560R 0.11 deleterious(0.04) possibly_damaging(0.637) TCGA-49-6761-01 20 16493527 16493527 G A KIF16B Silent p.F130F 0.10 TCGA-49-6761-01 20 40161984 40161984 C A CHD6 Nonsense_Mutation p.G87* 0.15 TCGA-49-6761-01 20 47768130 47768130 C A STAU1 Nonsense_Mutation p.E167* 0.16 TCGA-49-6761-01 20 50245520 50245520 T A ATP9A Missense_Mutation p.E587V 0.09 deleterious(0) possibly_damaging(0.58) TCGA-49-6761-01 20 60551268 60551268 C G TAF4 Missense_Mutation p.E1072Q 0.10 probably_damaging(0.985) TCGA-49-6761-01 20 9376236 9376236 A G PLCB4 Missense_Mutation p.E494G 0.12 tolerated(0.28) benign(0.02) TCGA-49-6761-01 21 11047540 11047540 G C BAGE2 RNA 0.03 TCGA-49-6761-01 22 22931143 22931143 C G IGLV2-33 Nonsense_Mutation p.S113* 0.10 TCGA-49-6761-01 22 35658363 35658363 C G HMGXB4 5'UTR 0.14 TCGA-49-6761-01 22 42610586 42610586 G A TCF20 Silent p.S242S 0.13 TCGA-49-6761-01 22 43272321 43272321 C T PACSIN2 Silent p.K390K 0.09 TCGA-49-6761-01 2 125405345 125405345 C G CNTNAP5 Missense_Mutation p.I628M 0.15 deleterious(0.02) possibly_damaging(0.531) TCGA-49-6761-01 2 138320892 138320892 C T THSD7B Silent p.R1083R 0.11 TCGA-49-6761-01 2 141641532 141641532 T A LRP1B Silent p.T1341T 0.12 TCGA-49-6761-01 2 141773358 141773358 A G LRP1B Silent p.G699G 0.16 TCGA-49-6761-01 2 164466757 164466757 C A FIGN Missense_Mutation p.G529W 0.21 deleterious(0) probably_damaging(1) TCGA-49-6761-01 2 164467138 164467138 G A FIGN Missense_Mutation p.P402S 0.16 deleterious(0.02) probably_damaging(0.996) TCGA-49-6761-01 2 167760039 167760039 G T XIRP2 Missense_Mutation p.W16L 0.09 probably_damaging(0.998) TCGA-49-6761-01 2 179431323 179431323 G C TTN Missense_Mutation p.I26512M 0.11 TCGA-49-6761-01 2 179439646 179439646 T A TTN Missense_Mutation p.E23738V 0.21 TCGA-49-6761-01 2 182767109 182767109 T C SSFA2 Silent p.P443P 0.07 TCGA-49-6761-01 2 189929354 189929354 C A COL5A2 Missense_Mutation p.G549C 0.29 probably_damaging(1) TCGA-49-6761-01 2 19553422 19553422 C A OSR1 Missense_Mutation p.A49S 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.595) TCGA-49-6761-01 2 202626448 202626448 C T ALS2 Missense_Mutation p.G90E 0.17 tolerated(0.07) possibly_damaging(0.84) TCGA-49-6761-01 2 30985980 30985980 G A CAPN13 Missense_Mutation p.L248F 0.20 tolerated(0.26) possibly_damaging(0.699) TCGA-49-6761-01 2 32339713 32339713 G C SPAST Missense_Mutation p.G230A 0.11 tolerated(0.24) possibly_damaging(0.888) TCGA-49-6761-01 2 3596229 3596229 C G RNASEH1 Splice_Site p.X217_splice 0.07 TCGA-49-6761-01 2 43797537 43797537 T C THADA Missense_Mutation p.Q726R 0.12 tolerated(0.07) benign(0.04) TCGA-49-6761-01 2 68270097 68270097 A T C1D Missense_Mutation p.F117Y 0.11 deleterious(0.01) possibly_damaging(0.897) TCGA-49-6761-01 2 72360361 72360361 G A CYP26B1 Silent p.L313L 0.16 TCGA-49-6761-01 2 73830384 73830384 G A ALMS1 Silent p.Q4104Q 0.17 TCGA-49-6761-01 2 74604792 74604792 G C DCTN1 Nonsense_Mutation p.S114* 0.09 TCGA-49-6761-01 2 79254244 79254244 A T REG3G Missense_Mutation p.S94C 0.17 deleterious(0) probably_damaging(0.938) TCGA-49-6761-01 3 108189679 108189679 C A MYH15 Missense_Mutation p.G437C 0.08 deleterious(0) probably_damaging(0.996) TCGA-49-6761-01 3 108211363 108211363 T C MYH15 Silent p.G305G 0.29 TCGA-49-6761-01 3 120489623 120489623 C T GTF2E1 Missense_Mutation p.S166L 0.10 deleterious(0.02) benign(0.202) TCGA-49-6761-01 3 120876378 120876378 G A STXBP5L Missense_Mutation p.E261K 0.19 deleterious(0) probably_damaging(0.999) TCGA-49-6761-01 3 13916540 13916540 T G WNT7A Missense_Mutation p.M68L 0.09 tolerated(0.87) benign(0.004) TCGA-49-6761-01 3 146246609 146246609 C A PLSCR1 Missense_Mutation p.G35V 0.24 deleterious(0.04) possibly_damaging(0.452) TCGA-49-6761-01 3 156272859 156272859 G A SSR3 Missense_Mutation p.S7F 0.10 deleterious(0.02) benign(0.444) TCGA-49-6761-01 3 16237379 16237379 G T GALNT15 Missense_Mutation p.V218L 0.11 deleterious(0) benign(0.111) TCGA-49-6761-01 3 195498624 195498624 G A MUC4 Missense_Mutation p.P4381S 0.10 possibly_damaging(0.857) TCGA-49-6761-01 3 195498625 195498625 G C MUC4 Missense_Mutation p.N4380K 0.10 benign(0.182) TCGA-49-6761-01 3 19575178 19575178 C T KCNH8 Nonsense_Mutation p.Q971* 0.21 TCGA-49-6761-01 3 28380097 28380097 G A AZI2 Nonsense_Mutation p.R76* 0.32 TCGA-49-6761-01 3 35763130 35763130 G A ARPP21 Silent p.G309G 0.10 TCGA-49-6761-01 3 38739977 38739977 G T SCN10A Silent p.A1578A 0.22 TCGA-49-6761-01 3 38889071 38889071 A T SCN11A Missense_Mutation p.L1497Q 0.11 deleterious(0) probably_damaging(1) TCGA-49-6761-01 3 44488255 44488255 C G ZNF445 Missense_Mutation p.D970H 0.25 tolerated(0.1) possibly_damaging(0.861) TCGA-49-6761-01 3 44612782 44612782 C T ZKSCAN7 Missense_Mutation p.A727V 0.14 deleterious(0) probably_damaging(0.924) TCGA-49-6761-01 3 64589620 64589620 C A ADAMTS9 Missense_Mutation p.W1242L 0.29 deleterious(0) probably_damaging(1) TCGA-49-6761-01 3 88199160 88199160 G T C3orf38 5'UTR 0.24 TCGA-49-6761-01 3 97311539 97311539 C A EPHA6 Missense_Mutation p.P824T 0.33 tolerated_low_confidence(0.3) benign(0.015) TCGA-49-6761-01 4 10445956 10445956 C T ZNF518B Missense_Mutation p.R666H 0.32 tolerated(0.14) benign(0.116) TCGA-49-6761-01 4 113199144 113199145 - A TIFA Frame_Shift_Ins p.L143Ffs*39 0.12 TCGA-49-6761-01 4 123269788 123269788 C T KIAA1109 Missense_Mutation p.P4399L 0.27 probably_damaging(0.975) TCGA-49-6761-01 4 187521447 187521447 C G FAT1 Missense_Mutation p.S3903T 0.26 probably_damaging(0.999) TCGA-49-6761-01 4 25674767 25674767 C G SLC34A2 Silent p.L369L 0.08 TCGA-49-6761-01 4 30726045 30726045 C T PCDH7 Missense_Mutation p.P1001S 0.17 deleterious(0) probably_damaging(0.972) TCGA-49-6761-01 4 65145918 65145918 C A TECRL Splice_Site p.X322_splice 0.32 TCGA-49-6761-01 4 9452085 9452085 G A DEFB131 Splice_Site p.X20_splice 0.50 TCGA-49-6761-01 5 108203572 108203572 C T FER Nonsense_Mutation p.Q196* 0.22 TCGA-49-6761-01 5 109124722 109124722 T G MAN2A1 Silent p.S616S 0.10 TCGA-49-6761-01 5 112177967 112177968 CG - APC Frame_Shift_Del p.G2227Qfs*12 0.10 TCGA-49-6761-01 5 118440887 118440887 C T DMXL1 Nonsense_Mutation p.Q100* 0.09 TCGA-49-6761-01 5 130797726 130797726 G C RAPGEF6 Missense_Mutation p.Q846E 0.12 tolerated(0.3) probably_damaging(0.983) TCGA-49-6761-01 5 13700752 13700752 T G DNAH5 Missense_Mutation p.N4574H 0.22 possibly_damaging(0.904) TCGA-49-6761-01 5 140182124 140182124 G A PCDHA3 Missense_Mutation p.V448M 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.799) TCGA-49-6761-01 5 140230156 140230156 G T PCDHA9 Silent p.T692T 0.10 TCGA-49-6761-01 5 140564076 140564076 G T PCDHB16 Missense_Mutation p.G648C 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-49-6761-01 5 156186415 156186415 G T SGCD 3'UTR 0.12 TCGA-49-6761-01 5 156186417 156186417 G T SGCD 3'UTR 0.11 TCGA-49-6761-01 5 159992643 159992643 C T ATP10B Silent p.Q1401Q 0.12 TCGA-49-6761-01 5 26881162 26881162 C A CDH9 3'UTR 0.29 TCGA-49-6761-01 5 40958281 40958281 G T C7 Missense_Mutation p.E469D 0.32 tolerated(0.53) benign(0.001) TCGA-49-6761-01 5 41203279 41203279 C A C6 Missense_Mutation p.K18N 0.27 tolerated(0.42) benign(0.004) TCGA-49-6761-01 5 94224613 94224613 G A MCTP1 Missense_Mutation p.A635V 0.14 deleterious(0.01) possibly_damaging(0.826) TCGA-49-6761-01 6 100403872 100403872 C A MCHR2 Missense_Mutation p.G51V 0.20 deleterious(0) probably_damaging(1) TCGA-49-6761-01 6 10529657 10529657 G A GCNT2 Silent p.L171L 0.17 TCGA-49-6761-01 6 130530743 130530743 C T SAMD3 Missense_Mutation p.E94K 0.13 tolerated_low_confidence(0.44) benign(0.002) TCGA-49-6761-01 6 135784321 135784321 G A AHI1 Silent p.D291D 0.09 TCGA-49-6761-01 6 155095170 155095170 G A SCAF8 Missense_Mutation p.M26I 0.29 tolerated(0.12) unknown(0) TCGA-49-6761-01 6 159206352 159206352 C T EZR Silent p.L152L 0.15 TCGA-49-6761-01 6 17834252 17834252 C T KIF13A Silent p.L402L 0.13 TCGA-49-6761-01 6 24843500 24843500 C T FAM65B Missense_Mutation p.D504N 0.15 tolerated(0.49) benign(0.062) TCGA-49-6761-01 6 26444523 26444523 A T BTN3A3 Nonsense_Mutation p.K142* 0.11 TCGA-49-6761-01 6 28227575 28227575 G T NKAPL Missense_Mutation p.K142N 0.10 tolerated(0.09) unknown(0) TCGA-49-6761-01 6 31608189 31608189 T C BAG6 Silent p.T1007T 0.19 TCGA-49-6761-01 6 43146097 43146097 C T SRF Missense_Mutation p.P410S 0.12 deleterious(0.03) possibly_damaging(0.806) TCGA-49-6761-01 6 43648835 43648835 C T MRPS18A Silent p.K45K 0.14 TCGA-49-6761-01 6 6267034 6267034 G T F13A1 Missense_Mutation p.P110T 0.20 deleterious(0) probably_damaging(1) TCGA-49-6761-01 6 66205196 66205196 G T EYS Silent p.P36P 0.22 TCGA-49-6761-01 6 69703681 69703681 G T BAI3 Missense_Mutation p.G586W 0.27 deleterious(0) probably_damaging(1) TCGA-49-6761-01 6 70071370 70071370 A G BAI3 Missense_Mutation p.E1402G 0.21 tolerated(0.08) benign(0.214) TCGA-49-6761-01 6 73905253 73905253 G C KCNQ5 3'UTR 0.30 TCGA-49-6761-01 6 87994642 87994642 A T GJB7 5'UTR 0.26 TCGA-49-6761-01 7 111368635 111368635 C T DOCK4 Missense_Mutation p.E1866K 0.14 tolerated_low_confidence(0.27) benign(0.106) TCGA-49-6761-01 7 116371843 116371843 C G MET Missense_Mutation p.S441C 0.10 deleterious(0) probably_damaging(0.999) TCGA-49-6761-01 7 136700368 136700368 C G CHRM2 Missense_Mutation p.D252E 0.08 tolerated(0.97) benign(0.004) TCGA-49-6761-01 7 144098962 144098962 C G NOBOX Missense_Mutation p.G98R 0.23 deleterious_low_confidence(0) possibly_damaging(0.9) TCGA-49-6761-01 7 24749972 24749972 C T DFNA5 Missense_Mutation p.E245K 0.10 deleterious(0.01) possibly_damaging(0.883) TCGA-49-6761-01 7 44009452 44009452 C T POLR2J4 Intron 0.19 TCGA-49-6761-01 7 44610424 44610424 T - DDX56 Frame_Shift_Del p.T315Lfs*35 0.36 TCGA-49-6761-01 7 56122154 56122154 C G CCT6A Missense_Mutation p.I98M 0.08 deleterious(0.03) possibly_damaging(0.572) TCGA-49-6761-01 7 5760666 5760666 C T RNF216 Missense_Mutation p.E548K 0.05 deleterious(0.04) benign(0.204) TCGA-49-6761-01 7 64452440 64452440 G A ERV3-1 Missense_Mutation p.S322F 0.09 tolerated(0.09) benign(0.32) TCGA-49-6761-01 7 7472294 7472294 C A COL28A1 Missense_Mutation p.G633V 0.39 deleterious(0) probably_damaging(1) TCGA-49-6761-01 7 82785429 82785429 A G PCLO Silent p.F176F 0.11 TCGA-49-6761-01 7 84628881 84628881 T A SEMA3D Missense_Mutation p.R737W 0.07 deleterious(0) possibly_damaging(0.662) TCGA-49-6761-01 7 92761372 92761372 C T SAMD9L Missense_Mutation p.E1305K 0.11 tolerated(0.34) benign(0.012) TCGA-49-6761-01 7 94053707 94053707 C T COL1A2 Silent p.L875L 0.13 TCGA-49-6761-01 8 10469299 10469299 G T RP1L1 Missense_Mutation p.T770K 0.16 benign(0.307) TCGA-49-6761-01 8 108348418 108348418 G A ANGPT1 Nonsense_Mutation p.Q179* 0.27 TCGA-49-6761-01 8 113504872 113504872 C A CSMD3 Missense_Mutation p.M1708I 0.33 tolerated(0.12) benign(0.085) TCGA-49-6761-01 8 120569904 120569904 C T ENPP2 Missense_Mutation p.E869K 0.05 deleterious(0.03) probably_damaging(0.993) TCGA-49-6761-01 8 143996466 143996466 T C CYP11B2 Missense_Mutation p.I197M 0.29 tolerated(0.26) benign(0.199) TCGA-49-6761-01 8 144941387 144941387 G A EPPK1 Missense_Mutation p.A2012V 0.35 probably_damaging(0.998) TCGA-49-6761-01 8 27277480 27277480 G T PTK2B Silent p.G91G 0.26 TCGA-49-6761-01 8 39142394 39142394 C T ADAM32 3'UTR 0.21 TCGA-49-6761-01 8 4851884 4851884 G T CSMD1 Missense_Mutation p.L19M 0.11 benign(0.157) TCGA-49-6761-01 8 55371727 55371727 G C SOX17 Silent p.P139P 0.09 TCGA-49-6761-01 8 62577795 62577795 G A ASPH Intron 0.32 TCGA-49-6761-01 8 82441816 82441816 G T FABP12 Missense_Mutation p.R35S 0.44 tolerated(0.6) benign(0.001) TCGA-49-6761-01 8 86193717 86193717 A G CA13 3'UTR 0.36 TCGA-49-6761-01 9 101812151 101812151 C A COL15A1 Missense_Mutation p.P960T 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-49-6761-01 9 104356919 104356919 C T PPP3R2 Silent p.A98A 0.15 TCGA-49-6761-01 9 118076 118076 C T FOXD4 Missense_Mutation p.R15H 0.07 tolerated(0.09) benign(0.031) TCGA-49-6761-01 9 14720260 14720260 G A CER1 Missense_Mutation p.P211L 0.23 deleterious(0) probably_damaging(1) TCGA-49-6761-01 9 23693456 23693456 C T ELAVL2 Missense_Mutation p.G248R 0.11 deleterious(0.05) benign(0.194) TCGA-49-6761-01 9 78722189 78722189 G T PCSK5 Missense_Mutation p.R377L 0.19 deleterious(0) probably_damaging(1) TCGA-49-6761-01 9 84531646 84531646 C A SPATA31D5P RNA 0.09 TCGA-49-6761-01 X 110654193 110654193 G A DCX Missense_Mutation p.L4F 0.12 unknown(0) TCGA-49-6761-01 X 125298801 125298801 A T DCAF12L2 Missense_Mutation p.H369Q 0.14 tolerated(0.29) benign(0.052) TCGA-49-6761-01 X 142795254 142795254 C A SPANXN2 Missense_Mutation p.D142Y 0.21 deleterious(0.02) unknown(0) TCGA-49-6761-01 X 144905488 144905488 G C SLITRK2 Silent p.L515L 0.10 TCGA-49-6761-01 X 150912290 150912290 G A CNGA2 Missense_Mutation p.E439K 0.13 deleterious(0) probably_damaging(0.997) TCGA-49-6761-01 X 29414549 29414549 C A IL1RAPL1 Silent p.I179I 0.16 TCGA-49-6761-01 X 35820400 35820400 G A MAGEB16 Silent p.Q29Q 0.18 TCGA-49-6761-01 X 50133388 50133388 C T DGKK RNA 0.16 TCGA-49-6761-01 X 79932261 79932261 T A BRWD3 Missense_Mutation p.Q1752H 0.16 deleterious_low_confidence(0) unknown(0) TCGA-49-6761-01 X 9660219 9660219 C A TBL1X Silent p.L272L 0.15 TCGA-49-6767-01 10 102256170 102256170 T C SEC31B Missense_Mutation p.M719V 0.11 tolerated(0.6) benign(0.002) TCGA-49-6767-01 10 105750539 105750539 G C SLK Missense_Mutation p.C86S 0.13 deleterious(0) probably_damaging(0.961) TCGA-49-6767-01 10 105794522 105794522 G A COL17A1 Missense_Mutation p.A1208V 0.23 benign(0.189) TCGA-49-6767-01 10 105794523 105794523 C A COL17A1 Missense_Mutation p.A1208S 0.21 benign(0.31) TCGA-49-6767-01 10 118355819 118355819 C A PNLIPRP1 Missense_Mutation p.L187M 0.20 deleterious(0.03) possibly_damaging(0.495) TCGA-49-6767-01 10 118897512 118897512 G C VAX1 Missense_Mutation p.A19G 0.15 tolerated_low_confidence(0.47) unknown(0) TCGA-49-6767-01 10 120810820 120810820 T A EIF3A Missense_Mutation p.Q737L 0.30 tolerated(0.26) unknown(0) TCGA-49-6767-01 10 133930853 133930853 G C JAKMIP3 Silent p.L136L 0.14 TCGA-49-6767-01 10 135369500 135369500 G T SYCE1 Missense_Mutation p.Q194K 0.35 deleterious(0.02) benign(0.093) TCGA-49-6767-01 10 25887427 25887427 C A GPR158 Missense_Mutation p.P958T 0.29 tolerated(0.69) benign(0.001) TCGA-49-6767-01 10 46967663 46967663 T C SYT15 Silent p.K138K 0.09 TCGA-49-6767-01 10 50953477 50953477 G C OGDHL Nonsense_Mutation p.Y514* 0.14 TCGA-49-6767-01 10 5203880 5203880 A T AKR1CL1 Missense_Mutation p.L106Q 0.35 deleterious(0) probably_damaging(1) TCGA-49-6767-01 10 62648365 62648365 A T RHOBTB1 Missense_Mutation p.V354E 0.40 tolerated(0.27) benign(0) TCGA-49-6767-01 10 8100557 8100557 G A GATA3 Silent p.R177R 0.06 TCGA-49-6767-01 10 87379647 87379647 G T GRID1 Silent p.P779P 0.33 TCGA-49-6767-01 10 93890 93890 C A TUBB8 Missense_Mutation p.G148C 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-49-6767-01 11 102822815 102822815 G C MMP13 Missense_Mutation p.P242R 0.25 deleterious(0) probably_damaging(1) TCGA-49-6767-01 11 113266829 113266829 C T ANKK1 Silent p.G241G 0.18 TCGA-49-6767-01 11 118081381 118081381 C A AMICA1 Missense_Mutation p.G82V 0.26 deleterious(0) probably_damaging(1) TCGA-49-6767-01 11 123814283 123814283 C A OR6T1 Missense_Mutation p.G88V 0.26 tolerated(0.23) benign(0.13) TCGA-49-6767-01 11 1265484 1265484 C G MUC5B Silent p.T2458T 0.31 TCGA-49-6767-01 11 1269244 1269244 C G MUC5B Missense_Mutation p.P3712A 0.44 unknown(0) TCGA-49-6767-01 11 130343194 130343194 G T ADAMTS15 Missense_Mutation p.E777D 0.29 deleterious(0) probably_damaging(0.999) TCGA-49-6767-01 11 134086941 134086941 C A NCAPD3 Missense_Mutation p.A91S 0.25 deleterious(0) probably_damaging(0.998) TCGA-49-6767-01 11 17190358 17190358 C G PIK3C2A Missense_Mutation p.E311Q 0.07 tolerated_low_confidence(0.06) benign(0.236) TCGA-49-6767-01 11 1857722 1857722 G T SYT8 Missense_Mutation p.G209V 0.59 deleterious(0.01) benign(0.173) TCGA-49-6767-01 11 25004827 25004827 G T LUZP2 Silent p.A251A 0.41 TCGA-49-6767-01 11 31811563 31811563 G T PAX6 Silent p.L410L 0.42 TCGA-49-6767-01 11 32956353 32956353 A T QSER1 Silent p.A1054A 0.50 TCGA-49-6767-01 11 4389409 4389409 G A OR52B4 Silent p.T39T 0.11 TCGA-49-6767-01 11 4661968 4661968 C A OR51D1 Silent p.L316L 0.42 TCGA-49-6767-01 11 4674283 4674283 T C OR51E1 Missense_Mutation p.I176T 0.45 tolerated(0.1) benign(0.001) TCGA-49-6767-01 11 47282902 47282902 C T NR1H3 Missense_Mutation p.P204S 0.54 tolerated(0.08) benign(0.024) TCGA-49-6767-01 11 4842747 4842747 T A OR51F2 Silent p.P44P 0.42 TCGA-49-6767-01 11 4843386 4843386 C A OR51F2 Silent p.S257S 0.40 TCGA-49-6767-01 11 4936493 4936493 G T OR51G2 Missense_Mutation p.P134H 0.55 deleterious(0) probably_damaging(0.999) TCGA-49-6767-01 11 5221548 5221548 G T OR51V1 Missense_Mutation p.A128D 0.29 deleterious(0) probably_damaging(0.934) TCGA-49-6767-01 11 55110712 55110712 C A OR4A16 Silent p.L12L 0.19 TCGA-49-6767-01 11 55406106 55406106 C A OR4P4 Silent p.S91S 0.44 TCGA-49-6767-01 11 55579446 55579446 C A OR5L1 Missense_Mutation p.F168L 0.15 deleterious(0.03) benign(0.002) TCGA-49-6767-01 11 55904620 55904620 G C OR8J3 Missense_Mutation p.T192S 0.15 deleterious(0.02) possibly_damaging(0.868) TCGA-49-6767-01 11 56043707 56043707 C A OR5T1 Missense_Mutation p.A198D 0.42 deleterious(0.03) possibly_damaging(0.833) TCGA-49-6767-01 11 56043777 56043777 C G OR5T1 Silent p.V221V 0.22 TCGA-49-6767-01 11 56237320 56237320 G C OR5M3 Missense_Mutation p.F218L 0.13 tolerated(0.17) benign(0.03) TCGA-49-6767-01 11 6007894 6007894 C A OR52L1 Silent p.L89L 0.45 TCGA-49-6767-01 11 60183058 60183058 C A MS4A14 Missense_Mutation p.A239D 0.35 deleterious(0.01) possibly_damaging(0.849) TCGA-49-6767-01 11 60714150 60714150 C A SLC15A3 Silent p.V234V 0.13 TCGA-49-6767-01 11 60783254 60783254 A T CD6 Missense_Mutation p.Y486F 0.62 deleterious(0.02) probably_damaging(0.992) TCGA-49-6767-01 11 62298829 62298829 C A AHNAK Silent p.V1020V 0.49 TCGA-49-6767-01 11 63965045 63965045 G C STIP1 Missense_Mutation p.E294Q 0.19 deleterious(0.04) possibly_damaging(0.525) TCGA-49-6767-01 11 64882402 64882402 C T TM7SF2 Silent p.T247T 0.31 TCGA-49-6767-01 11 65146858 65146858 C A SLC25A45 Missense_Mutation p.G110W 0.18 deleterious(0) probably_damaging(1) TCGA-49-6767-01 11 65664372 65664372 T A FOSL1 Missense_Mutation p.T69S 0.29 tolerated(0.86) benign(0.014) TCGA-49-6767-01 11 66084155 66084155 G T CD248 Missense_Mutation p.T115N 0.30 deleterious(0) probably_damaging(0.998) TCGA-49-6767-01 11 66189700 66189700 C G NPAS4 Silent p.L95L 0.36 TCGA-49-6767-01 11 66189949 66189949 A T NPAS4 Missense_Mutation p.I119F 0.28 tolerated(0.2) benign(0.135) TCGA-49-6767-01 11 67186368 67186368 C G CARNS1 Missense_Mutation p.P169R 0.15 deleterious(0) probably_damaging(0.997) TCGA-49-6767-01 11 7083644 7083644 T A NLRP14 Missense_Mutation p.L962Q 0.42 deleterious(0) probably_damaging(0.993) TCGA-49-6767-01 11 72292014 72292014 G A PDE2A Silent p.D683D 0.32 TCGA-49-6767-01 11 75298562 75298562 C G MAP6 Missense_Mutation p.G662R 0.09 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-49-6767-01 11 85445402 85445402 G A SYTL2 Missense_Mutation p.P323S 0.31 tolerated(0.97) benign(0.001) TCGA-49-6767-01 11 88911910 88911910 C A TYR Silent p.L263L 0.29 TCGA-49-6767-01 11 89028412 89028412 G C TYR Missense_Mutation p.A490P 0.23 deleterious(0.01) benign(0.432) TCGA-49-6767-01 11 89421795 89421795 C A FOLH1B RNA 0.28 TCGA-49-6767-01 11 89947237 89947237 T C CHORDC1 Missense_Mutation p.Q93R 0.24 tolerated(0.17) benign(0.001) TCGA-49-6767-01 11 94126755 94126755 G C GPR83 Missense_Mutation p.I181M 0.25 tolerated(1) benign(0.017) TCGA-49-6767-01 12 10218183 10218183 G T CLEC9A Silent p.T226T 0.37 TCGA-49-6767-01 12 102589845 102589845 A T PARPBP Nonsense_Mutation p.K506* 0.71 TCGA-49-6767-01 12 1025913 1025913 T G RAD52 Missense_Mutation p.N206T 0.29 tolerated(0.1) benign(0.029) TCGA-49-6767-01 12 10312555 10312555 C G OLR1 Missense_Mutation p.G249A 0.21 deleterious(0.03) probably_damaging(0.941) TCGA-49-6767-01 12 10531201 10531201 A T KLRK1 Nonsense_Mutation p.C127* 0.29 TCGA-49-6767-01 12 109186491 109186491 C A SSH1 Silent p.P488P 0.54 TCGA-49-6767-01 12 11339357 11339357 G T TAS2R42 Missense_Mutation p.L63M 0.29 deleterious(0.04) possibly_damaging(0.542) TCGA-49-6767-01 12 120208591 120208591 G C CIT Missense_Mutation p.L736V 0.14 deleterious(0.03) benign(0.031) TCGA-49-6767-01 12 124393958 124393958 G T DNAH10 Silent p.S3204S 0.17 TCGA-49-6767-01 12 125397907 125397907 G C UBC Missense_Mutation p.I137M 0.14 deleterious(0) probably_damaging(0.995) TCGA-49-6767-01 12 133196643 133196643 T G P2RX2 Missense_Mutation p.V172G 0.50 deleterious(0) benign(0.327) TCGA-49-6767-01 12 13716296 13716296 C A GRIN2B Missense_Mutation p.K1292N 0.32 deleterious(0.03) benign(0.339) TCGA-49-6767-01 12 18891415 18891415 C A CAPZA3 Silent p.L71L 0.34 TCGA-49-6767-01 12 20890206 20890206 T C SLCO1C1 Silent p.I516I 0.26 TCGA-49-6767-01 12 21721852 21721852 G T GYS2 Missense_Mutation p.T257K 0.22 deleterious(0) probably_damaging(0.999) TCGA-49-6767-01 12 39756909 39756909 C A KIF21A Missense_Mutation p.G337V 0.11 deleterious(0) probably_damaging(0.982) TCGA-49-6767-01 12 4479814 4479814 G T FGF23 Missense_Mutation p.P151T 0.28 tolerated(0.39) probably_damaging(0.99) TCGA-49-6767-01 12 4829883 4829883 G T GALNT8 Missense_Mutation p.G14W 0.21 deleterious_low_confidence(0.01) probably_damaging(0.965) TCGA-49-6767-01 12 48737288 48737288 C A ZNF641 Missense_Mutation p.R262I 0.41 deleterious(0) benign(0.143) TCGA-49-6767-01 12 4920341 4920341 G T KCNA6 Silent p.L378L 0.09 TCGA-49-6767-01 12 49724266 49724266 G T TROAP Missense_Mutation p.E546D 0.29 tolerated_low_confidence(0.06) benign(0.388) TCGA-49-6767-01 12 5154413 5154413 C A KCNA5 Missense_Mutation p.P367H 0.25 deleterious(0) probably_damaging(1) TCGA-49-6767-01 12 52758891 52758891 G T KRT85 Missense_Mutation p.R162S 0.31 deleterious(0.01) benign(0.154) TCGA-49-6767-01 12 54348814 54348814 C T HOXC12 Missense_Mutation p.A34V 0.31 deleterious(0.01) benign(0.13) TCGA-49-6767-01 12 54379592 54379592 C A HOXC10 Silent p.R183R 0.27 TCGA-49-6767-01 12 55715043 55715043 C A OR6C1 Silent p.I220I 0.41 TCGA-49-6767-01 12 5603344 5603344 T A NTF3 Intron 0.31 TCGA-49-6767-01 12 56531347 56531347 G A ESYT1 Missense_Mutation p.G678E 0.11 deleterious(0) probably_damaging(0.996) TCGA-49-6767-01 12 58020563 58020563 G - B4GALNT1 Frame_Shift_Del p.F523Sfs*8 0.23 TCGA-49-6767-01 12 64875778 64875778 G C TBK1 Missense_Mutation p.K323N 0.06 tolerated(0.17) benign(0.438) TCGA-49-6767-01 12 72026208 72026208 C A ZFC3H1 Silent p.R968R 0.55 TCGA-49-6767-01 12 7531657 7531657 T C CD163L1 Missense_Mutation p.E763G 0.30 deleterious(0) probably_damaging(1) TCGA-49-6767-01 12 7531658 7531658 C A CD163L1 Nonsense_Mutation p.E763* 0.30 TCGA-49-6767-01 12 78591054 78591054 G T NAV3 Missense_Mutation p.A2085S 0.50 deleterious(0) probably_damaging(0.999) TCGA-49-6767-01 12 80762012 80762012 G A OTOGL Missense_Mutation p.D2171N 0.36 tolerated(0.38) benign(0.306) TCGA-49-6767-01 12 8377324 8377324 G T FAM90A1 Silent p.P35P 0.41 TCGA-49-6767-01 13 108881888 108881888 G T ABHD13 Nonsense_Mutation p.G108* 0.17 TCGA-49-6767-01 13 19751104 19751104 G T TUBA3C Missense_Mutation p.T340N 0.17 tolerated_low_confidence(0.09) benign(0.005) TCGA-49-6767-01 13 25352513 25352513 A T RNF17 Missense_Mutation p.K133M 0.23 deleterious(0.01) benign(0.037) TCGA-49-6767-01 13 29599271 29599271 G T MTUS2 Missense_Mutation p.V156F 0.11 deleterious(0) possibly_damaging(0.732) TCGA-49-6767-01 13 33686964 33686964 C T STARD13 Missense_Mutation p.V796I 0.44 tolerated(0.43) probably_damaging(0.987) TCGA-49-6767-01 13 39262601 39262601 G C FREM2 Missense_Mutation p.D374H 0.26 deleterious(0.05) probably_damaging(0.992) TCGA-49-6767-01 13 46357452 46357452 C A SIAH3 3'UTR 0.41 TCGA-49-6767-01 13 47409356 47409356 G T HTR2A Silent p.I344I 0.06 TCGA-49-6767-01 13 52728029 52728029 C - NEK3 Splice_Site p.X103_splice 0.12 TCGA-49-6767-01 13 78218472 78218472 C G SCEL 3'UTR 0.26 TCGA-49-6767-01 13 99042284 99042284 T G FARP1 Missense_Mutation p.V310G 0.18 deleterious(0) probably_damaging(0.996) TCGA-49-6767-01 14 105413167 105413167 G T AHNAK2 Missense_Mutation p.A2874D 0.17 possibly_damaging(0.852) TCGA-49-6767-01 14 105420366 105420366 G T AHNAK2 Silent p.G474G 0.32 TCGA-49-6767-01 14 105420648 105420648 C A AHNAK2 Missense_Mutation p.R380S 0.25 benign(0.041) TCGA-49-6767-01 14 105995420 105995420 C T TMEM121 Silent p.I83I 0.18 TCGA-49-6767-01 14 19571360 19571360 A G POTEG Missense_Mutation p.K380R 0.06 deleterious(0.03) possibly_damaging(0.65) TCGA-49-6767-01 14 20528375 20528375 C A OR4L1 Missense_Mutation p.P58T 0.33 deleterious(0) probably_damaging(1) TCGA-49-6767-01 14 22314934 22314934 C G TRAV8-2 5'UTR 0.06 TCGA-49-6767-01 14 23237370 23237370 C T OXA1L Silent p.A203A 0.31 TCGA-49-6767-01 14 23855735 23855735 T A MYH6 Missense_Mutation p.E1583V 0.26 deleterious(0) probably_damaging(0.967) TCGA-49-6767-01 14 23859391 23859391 C G MYH6 Missense_Mutation p.A1203P 0.09 deleterious(0.01) benign(0.019) TCGA-49-6767-01 14 33291371 33291371 C T AKAP6 Missense_Mutation p.P1451L 0.18 deleterious_low_confidence(0) benign(0.193) TCGA-49-6767-01 14 38679167 38679167 C A SSTR1 Silent p.P191P 0.23 TCGA-49-6767-01 14 45645710 45645710 T C FANCM Silent p.D1251D 0.32 TCGA-49-6767-01 14 75475981 75475981 G A EIF2B2 3'UTR 0.08 TCGA-49-6767-01 14 76633041 76633041 G T GPATCH2L Missense_Mutation p.G233V 0.12 deleterious(0) probably_damaging(1) TCGA-49-6767-01 14 88431915 88431915 C G GALC Missense_Mutation p.G323R 0.25 deleterious(0) probably_damaging(0.999) TCGA-49-6767-01 15 20874950 20874950 T C NBEAP1 RNA 0.18 TCGA-49-6767-01 15 24921596 24921596 C A NPAP1 Silent p.T194T 0.29 TCGA-49-6767-01 15 33822838 33822838 G C RYR3 Missense_Mutation p.V109L 0.30 benign(0.009) TCGA-49-6767-01 15 40675518 40675518 C T KNSTRN Missense_Mutation p.P100L 0.39 tolerated(0.06) benign(0.059) TCGA-49-6767-01 15 41864678 41864678 C T TYRO3 Silent p.P597P 0.11 TCGA-49-6767-01 15 55916678 55916678 C G PRTG Missense_Mutation p.Q985H 0.18 tolerated(0.06) possibly_damaging(0.825) TCGA-49-6767-01 15 55964743 55964743 A T PRTG Silent p.A647A 0.45 TCGA-49-6767-01 15 76074505 76074505 G T RN7SL319P 5'Flank 0.29 TCGA-49-6767-01 15 84706570 84706570 G T ADAMTSL3 3'UTR 0.56 TCGA-49-6767-01 15 90903397 90903397 G T ZNF774 Nonsense_Mutation p.E112* 0.39 TCGA-49-6767-01 16 21739679 21739679 G T OTOA Missense_Mutation p.G712C 0.42 tolerated(0.09) probably_damaging(0.933) TCGA-49-6767-01 16 51176050 51176050 G T SALL1 Missense_Mutation p.T28K 0.30 tolerated(0.76) benign(0.05) TCGA-49-6767-01 16 53672256 53672256 T G RPGRIP1L Missense_Mutation p.E1009A 0.10 tolerated(0.61) benign(0.004) TCGA-49-6767-01 16 56377844 56377844 G T GNAO1 Silent p.R349R 0.34 TCGA-49-6767-01 16 56438863 56438863 G A AMFR Silent p.L266L 0.16 TCGA-49-6767-01 16 58582513 58582513 C A CNOT1 Intron 0.28 TCGA-49-6767-01 16 58582515 58582515 T A CNOT1 Intron 0.30 TCGA-49-6767-01 16 72163128 72163128 C A PMFBP1 Missense_Mutation p.R596M 0.14 deleterious(0.01) probably_damaging(0.946) TCGA-49-6767-01 16 74445619 74445619 A C CLEC18B Missense_Mutation p.F311C 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-49-6767-01 16 76486440 76486440 T A CNTNAP4 Silent p.S296S 0.15 TCGA-49-6767-01 16 76513434 76513434 C A CNTNAP4 Silent p.T554T 0.17 TCGA-49-6767-01 16 7760649 7760649 G A RBFOX1 Missense_Mutation p.A387T 0.39 tolerated_low_confidence(0.15) possibly_damaging(0.512) TCGA-49-6767-01 16 81181898 81181898 G A PKD1L2 RNA 0.18 TCGA-49-6767-01 16 87678336 87678336 C A JPH3 Silent p.T285T 0.26 TCGA-49-6767-01 17 10222405 10222405 A G MYH13 Missense_Mutation p.L1147P 0.40 deleterious(0.01) possibly_damaging(0.89) TCGA-49-6767-01 17 18044107 18044107 C - MYO15A Frame_Shift_Del p.L1791Cfs*6 0.28 TCGA-49-6767-01 17 20107987 20107987 G T SPECC1 Missense_Mutation p.G209C 0.33 deleterious(0.02) possibly_damaging(0.664) TCGA-49-6767-01 17 26965369 26965369 G A KIAA0100 Silent p.C471C 0.33 TCGA-49-6767-01 17 27306716 27306716 G A SEZ6 Silent p.G280G 0.15 TCGA-49-6767-01 17 27935036 27935036 G T ANKRD13B Nonsense_Mutation p.E95* 0.42 TCGA-49-6767-01 17 29654741 29654742 - T NF1 Frame_Shift_Ins p.E1832* 0.16 TCGA-49-6767-01 17 29661882 29661882 G T NF1 Nonsense_Mutation p.E1947* 0.18 TCGA-49-6767-01 17 33849347 33849347 G A SLFN12L Missense_Mutation p.H18Y 0.15 deleterious(0.02) benign(0.291) TCGA-49-6767-01 17 34328476 34328476 G T CCL15 Missense_Mutation p.S19Y 0.11 deleterious(0) possibly_damaging(0.501) TCGA-49-6767-01 17 46654118 46654118 G T HOXB4 Missense_Mutation p.P241H 0.20 tolerated(0.2) unknown(0) TCGA-49-6767-01 17 47841458 47841458 C G FAM117A 5'UTR 0.27 TCGA-49-6767-01 17 5084382 5084382 T C ZNF594 3'UTR 0.48 TCGA-49-6767-01 17 51900967 51900967 C A KIF2B Silent p.I191I 0.18 TCGA-49-6767-01 17 51901301 51901301 G T KIF2B Missense_Mutation p.G303W 0.28 deleterious(0) probably_damaging(1) TCGA-49-6767-01 17 60484501 60484501 G A EFCAB3 Silent p.E317E 0.26 TCGA-49-6767-01 17 61914849 61914849 C T SMARCD2 Missense_Mutation p.R118H 0.34 deleterious(0) possibly_damaging(0.738) TCGA-49-6767-01 17 63200369 63200369 C G RGS9 Missense_Mutation p.R385G 0.09 deleterious(0) probably_damaging(0.999) TCGA-49-6767-01 17 67212137 67212137 G T ABCA10 Missense_Mutation p.A226E 0.10 deleterious(0.05) possibly_damaging(0.827) TCGA-49-6767-01 17 68172471 68172471 G T KCNJ2 3'UTR 0.38 TCGA-49-6767-01 17 72368430 72368430 G T GPR142 Silent p.L360L 0.25 TCGA-49-6767-01 17 72926892 72926892 G C OTOP2 Missense_Mutation p.V388L 0.18 deleterious(0) possibly_damaging(0.89) TCGA-49-6767-01 17 73488697 73488697 C T KIAA0195 Missense_Mutation p.T580I 0.16 tolerated(0.05) benign(0.258) TCGA-49-6767-01 17 7484873 7484874 - T CD68 3'UTR 0.32 TCGA-49-6767-01 17 7576855 7576855 G A TP53 Nonsense_Mutation p.Q331* 0.34 TCGA-49-6767-01 17 8770949 8770949 C A PIK3R6 5'UTR 0.35 TCGA-49-6767-01 18 12814257 12814257 G A PTPN2 Missense_Mutation p.S268L 0.27 deleterious(0.02) possibly_damaging(0.897) TCGA-49-6767-01 18 25573585 25573585 G A CDH2 Missense_Mutation p.T346M 0.44 deleterious(0.01) probably_damaging(1) TCGA-49-6767-01 18 28602364 28602364 G C DSC3 Missense_Mutation p.L294V 0.35 tolerated(0.16) possibly_damaging(0.566) TCGA-49-6767-01 18 2931392 2931392 C A LPIN2 Missense_Mutation p.G440C 0.50 tolerated(0.08) probably_damaging(0.999) TCGA-49-6767-01 18 44266155 44266155 C G ST8SIA5 Missense_Mutation p.S184T 0.32 benign(0.392) TCGA-49-6767-01 18 6943237 6943237 T C LAMA1 Silent p.P3003P 0.40 TCGA-49-6767-01 18 8783547 8783547 G T SOGA2 Missense_Mutation p.R146M 0.44 deleterious(0) possibly_damaging(0.729) TCGA-49-6767-01 19 11105642 11105642 G T SMARCA4 Nonsense_Mutation p.E520* 0.43 TCGA-49-6767-01 19 17296811 17296811 G T MYO9B Splice_Site p.X859_splice 0.35 TCGA-49-6767-01 19 17752261 17752261 C T UNC13A Silent p.Q859Q 0.50 TCGA-49-6767-01 19 19611940 19611940 G A GATAD2A Silent p.S405S 0.09 TCGA-49-6767-01 19 2216346 2216346 C G DOT1L Missense_Mutation p.P664A 0.29 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-49-6767-01 19 2396584 2396584 C T TMPRSS9 Missense_Mutation p.R64W 0.60 deleterious(0) possibly_damaging(0.776) TCGA-49-6767-01 19 31769817 31769817 C A TSHZ3 Missense_Mutation p.M294I 0.33 deleterious(0) probably_damaging(0.979) TCGA-49-6767-01 19 33490547 33490547 T A RHPN2 Silent p.P390P 0.13 TCGA-49-6767-01 19 34718339 34718339 G T LSM14A 3'UTR 0.37 TCGA-49-6767-01 19 37130585 37130585 C A ZNF461 Missense_Mutation p.C221F 0.43 deleterious(0) benign(0.247) TCGA-49-6767-01 19 41939238 41939238 G C ATP5SL Missense_Mutation p.L185V 0.17 deleterious(0) probably_damaging(0.999) TCGA-49-6767-01 19 42560811 42560811 C A GRIK5 Intron 0.30 TCGA-49-6767-01 19 42827820 42827820 C A TMEM145 Missense_Mutation p.P427H 0.41 tolerated(0.08) benign(0.258) TCGA-49-6767-01 19 43420611 43420611 G A PSG6 Silent p.P31P 0.45 TCGA-49-6767-01 19 44792248 44792248 T C ZNF235 Missense_Mutation p.H447R 0.45 deleterious(0.04) probably_damaging(0.994) TCGA-49-6767-01 19 4512005 4512005 G T PLIN4 Missense_Mutation p.T642N 0.36 deleterious(0.01) possibly_damaging(0.641) TCGA-49-6767-01 19 46094361 46094361 G T GPR4 Missense_Mutation p.P255H 0.29 deleterious(0) probably_damaging(0.989) TCGA-49-6767-01 19 46509878 46509878 G T CCDC61 Missense_Mutation p.R98L 0.47 deleterious(0) probably_damaging(0.937) TCGA-49-6767-01 19 46664363 46664363 A G IGFL2 3'UTR 0.42 TCGA-49-6767-01 19 47912735 47912735 C T MEIS3 Missense_Mutation p.G223R 0.37 tolerated(0.05) benign(0.205) TCGA-49-6767-01 19 48239761 48239761 G - EHD2 Frame_Shift_Del p.D352Tfs*12 0.35 TCGA-49-6767-01 19 48519179 48519179 T A ELSPBP1 Missense_Mutation p.Y80N 0.46 deleterious(0) probably_damaging(0.953) TCGA-49-6767-01 19 50189881 50189881 G T PRMT1 Silent p.T310T 0.43 TCGA-49-6767-01 19 53770380 53770380 C G VN1R4 Missense_Mutation p.R180P 0.38 deleterious(0.02) benign(0.031) TCGA-49-6767-01 19 54780746 54780746 C A LILRB2 Missense_Mutation p.L466F 0.37 tolerated(0.42) possibly_damaging(0.556) TCGA-49-6767-01 19 5587938 5587938 C A SAFB2 Missense_Mutation p.R860L 0.44 deleterious(0) possibly_damaging(0.726) TCGA-49-6767-01 19 57640280 57640280 C A USP29 Missense_Mutation p.N79K 0.34 deleterious(0.04) benign(0.112) TCGA-49-6767-01 19 58564794 58564794 C A ZSCAN1 Intron 0.36 TCGA-49-6767-01 19 8131064 8131064 G A FBN3 Silent p.I2723I 0.45 TCGA-49-6767-01 19 9524200 9524200 C A ZNF266 Missense_Mutation p.M467I 0.21 tolerated(0.07) benign(0.001) TCGA-49-6767-01 19 9578911 9578911 T A ZNF560 Nonsense_Mutation p.R238* 0.52 TCGA-49-6767-01 1 100382210 100382210 G T AGL Missense_Mutation p.L1468F 0.21 tolerated(0.16) benign(0.367) TCGA-49-6767-01 1 103474073 103474073 C A COL11A1 Splice_Site p.X544_splice 0.12 TCGA-49-6767-01 1 113471717 113471717 C T SLC16A1 Missense_Mutation p.G72R 0.14 deleterious(0) probably_damaging(0.973) TCGA-49-6767-01 1 12628246 12628246 C G DHRS3 3'UTR 0.47 TCGA-49-6767-01 1 144882775 144882775 C A PDE4DIP Missense_Mutation p.V1082L 0.12 tolerated(0.26) benign(0.012) TCGA-49-6767-01 1 150531542 150531542 G A ADAMTSL4 Silent p.G888G 0.11 TCGA-49-6767-01 1 158152695 158152695 G T CD1D Missense_Mutation p.G212V 0.31 deleterious(0.04) possibly_damaging(0.794) TCGA-49-6767-01 1 158650416 158650416 C A SPTA1 Missense_Mutation p.G212V 0.37 tolerated(0.66) possibly_damaging(0.694) TCGA-49-6767-01 1 158911940 158911940 T G PYHIN1 Missense_Mutation p.H251Q 0.40 tolerated(0.58) benign(0.315) TCGA-49-6767-01 1 160147225 160147225 C A ATP1A4 Intron 0.48 TCGA-49-6767-01 1 160784336 160784336 C A LY9 Missense_Mutation p.T286K 0.33 deleterious(0.04) possibly_damaging(0.845) TCGA-49-6767-01 1 161953798 161953798 G T OLFML2B Silent p.G640G 0.11 TCGA-49-6767-01 1 16343586 16343586 C A HSPB7 Nonsense_Mutation p.E106* 0.38 TCGA-49-6767-01 1 171561168 171561168 G A PRRC2C 3'UTR 0.56 TCGA-49-6767-01 1 173616126 173616126 C A ANKRD45 Missense_Mutation p.A119S 0.44 deleterious(0) benign(0.262) TCGA-49-6767-01 1 173878765 173878765 C T SERPINC1 Missense_Mutation p.G360S 0.16 tolerated(1) benign(0.003) TCGA-49-6767-01 1 175365812 175365812 G C TNR Missense_Mutation p.Q370E 0.10 tolerated(0.71) benign(0.08) TCGA-49-6767-01 1 182638801 182638801 G T RGS8 Intron 0.45 TCGA-49-6767-01 1 186344160 186344160 T A TPR Translation_Start_Site p.M1? 0.14 benign(0.008) TCGA-49-6767-01 1 196274434 196274434 G T KCNT2 Missense_Mutation p.P842H 0.39 deleterious(0) probably_damaging(0.962) TCGA-49-6767-01 1 197522226 197522226 A T DENND1B Missense_Mutation p.L389Q 0.32 deleterious(0) probably_damaging(0.933) TCGA-49-6767-01 1 198668779 198668779 G T PTPRC Missense_Mutation p.G129C 0.09 deleterious(0.01) possibly_damaging(0.817) TCGA-49-6767-01 1 202702652 202702652 C A KDM5B Missense_Mutation p.W1262C 0.14 deleterious(0) probably_damaging(0.999) TCGA-49-6767-01 1 203743121 203743121 C T LAX1 Missense_Mutation p.S170L 0.44 tolerated(0.07) benign(0.006) TCGA-49-6767-01 1 205036281 205036281 C T CNTN2 Silent p.T676T 0.07 TCGA-49-6767-01 1 212245479 212245479 A C DTL Missense_Mutation p.Y320S 0.06 deleterious(0) probably_damaging(0.999) TCGA-49-6767-01 1 216737622 216737622 T A ESRRG Silent p.T279T 0.10 TCGA-49-6767-01 1 21936680 21936680 G A RAP1GAP Missense_Mutation p.S375F 0.16 deleterious(0) probably_damaging(1) TCGA-49-6767-01 1 235969162 235969162 T C LYST Missense_Mutation p.T1092A 0.11 tolerated_low_confidence(0.75) benign(0) TCGA-49-6767-01 1 236714074 236714074 A C HEATR1 3'UTR 0.44 TCGA-49-6767-01 1 237944870 237944870 C A RYR2 Silent p.S3962S 0.36 TCGA-49-6767-01 1 238048492 238048492 T A ZP4 Silent p.T428T 0.42 TCGA-49-6767-01 1 240497408 240497408 G T FMN2 Splice_Site p.X1549_splice 0.39 TCGA-49-6767-01 1 240497409 240497409 G T FMN2 Missense_Mutation p.D1549Y 0.38 probably_damaging(0.986) TCGA-49-6767-01 1 2430207 2430207 G A PLCH2 Missense_Mutation p.E765K 0.27 deleterious(0) possibly_damaging(0.901) TCGA-49-6767-01 1 243652408 243652408 G T SDCCAG8 Missense_Mutation p.S693I 0.35 tolerated(0.15) benign(0.299) TCGA-49-6767-01 1 24383886 24383886 C A MYOM3 Missense_Mutation p.G1428W 0.37 deleterious(0) probably_damaging(1) TCGA-49-6767-01 1 247588623 247588623 C A NLRP3 Missense_Mutation p.S626R 0.35 tolerated(0.05) probably_damaging(0.969) TCGA-49-6767-01 1 247588625 247588625 A G NLRP3 Missense_Mutation p.Q627R 0.35 tolerated(0.09) probably_damaging(0.949) TCGA-49-6767-01 1 247607377 247607377 G T NLRP3 Nonsense_Mutation p.G925* 0.37 TCGA-49-6767-01 1 248128777 248128777 C A OR2AK2 Silent p.T48T 0.09 TCGA-49-6767-01 1 248436317 248436317 T A OR2T33 Missense_Mutation p.N267I 0.13 tolerated(0.11) possibly_damaging(0.845) TCGA-49-6767-01 1 248525781 248525781 C A OR2T4 Missense_Mutation p.P300H 0.35 deleterious(0) probably_damaging(0.981) TCGA-49-6767-01 1 34238194 34238194 A T CSMD2 Missense_Mutation p.S568T 0.41 deleterious(0.02) probably_damaging(0.947) TCGA-49-6767-01 1 35365842 35365842 G T DLGAP3 Silent p.T380T 0.14 TCGA-49-6767-01 1 35940490 35940490 C A KIAA0319L Missense_Mutation p.V311L 0.17 deleterious(0) benign(0.234) TCGA-49-6767-01 1 38082184 38082184 G T RSPO1 Silent p.A86A 0.38 TCGA-49-6767-01 1 38155361 38155361 C A C1orf109 Silent p.R64R 0.19 TCGA-49-6767-01 1 43616454 43616454 C T FAM183A Silent p.P52P 0.22 TCGA-49-6767-01 1 55474247 55474247 C A BSND Silent p.A303A 0.23 TCGA-49-6767-01 1 57372457 57372457 G T C8A Missense_Mutation p.G405V 0.33 tolerated(0.55) benign(0.296) TCGA-49-6767-01 1 57417726 57417726 G T C8B Missense_Mutation p.P221T 0.34 tolerated(0.18) benign(0.041) TCGA-49-6767-01 1 6313832 6313832 G A GPR153 Silent p.G244G 0.22 TCGA-49-6767-01 1 66070859 66070859 G T LEPR Missense_Mutation p.R514S 0.27 deleterious(0.03) benign(0.103) TCGA-49-6767-01 1 67206396 67206396 G A SGIP1 Missense_Mutation p.E764K 0.18 deleterious(0) possibly_damaging(0.515) TCGA-49-6767-01 1 68910296 68910296 G T RPE65 Missense_Mutation p.P138Q 0.30 tolerated(0.68) probably_damaging(0.988) TCGA-49-6767-01 1 79470904 79470904 A T ELTD1 Missense_Mutation p.V8E 0.17 deleterious_low_confidence(0) probably_damaging(0.944) TCGA-49-6767-01 1 89651052 89651052 T C GBP4 Missense_Mutation p.E603G 0.20 tolerated(0.07) benign(0.003) TCGA-49-6767-01 1 92445140 92445140 G A BRDT Silent p.T371T 0.27 TCGA-49-6767-01 1 99771956 99771956 C T LPPR4 Missense_Mutation p.A561V 0.18 deleterious(0.01) possibly_damaging(0.577) TCGA-49-6767-01 20 10280043 10280043 G T SNAP25 Missense_Mutation p.D179Y 0.39 deleterious(0) probably_damaging(0.991) TCGA-49-6767-01 20 18286371 18286371 A T ZNF133 Missense_Mutation p.E14V 0.19 deleterious(0) probably_damaging(0.994) TCGA-49-6767-01 20 23066072 23066072 G A CD93 Missense_Mutation p.S253L 0.12 deleterious(0.03) benign(0.023) TCGA-49-6767-01 20 30064325 30064325 G T REM1 Missense_Mutation p.R26L 0.18 deleterious(0.03) benign(0.004) TCGA-49-6767-01 20 30064326 30064326 G T REM1 Silent p.R26R 0.17 TCGA-49-6767-01 20 30436290 30436290 G C FOXS1 5'Flank 0.44 TCGA-49-6767-01 20 30730905 30730905 G T TM9SF4 Nonsense_Mutation p.E217* 0.19 TCGA-49-6767-01 20 35766357 35766357 C - MROH8 Frame_Shift_Del p.G529Efs*9 0.31 TCGA-49-6767-01 20 39792419 39792419 C G PLCG1 Missense_Mutation p.P319R 0.17 tolerated(0.35) possibly_damaging(0.627) TCGA-49-6767-01 20 40748600 40748600 T A PTPRT Silent p.R953R 0.32 TCGA-49-6767-01 20 44639949 44639949 A T MMP9 Missense_Mutation p.S273C 0.30 deleterious(0.01) probably_damaging(0.981) TCGA-49-6767-01 20 45354645 45354645 G T SLC2A10 Missense_Mutation p.D324Y 0.27 deleterious(0) possibly_damaging(0.736) TCGA-49-6767-01 20 47886771 47886771 C T ZNFX1 Silent p.Q526Q 0.10 TCGA-49-6767-01 20 50408856 50408856 C A SALL4 Missense_Mutation p.A56S 0.25 tolerated(0.72) benign(0.021) TCGA-49-6767-01 20 54824480 54824480 C T MC3R Missense_Mutation p.T194I 0.23 tolerated(0.16) possibly_damaging(0.692) TCGA-49-6767-01 20 54824808 54824808 C A MC3R Missense_Mutation p.S303R 0.26 deleterious(0) probably_damaging(0.998) TCGA-49-6767-01 20 55758937 55758937 G T BMP7 Silent p.R267R 0.25 TCGA-49-6767-01 20 57829644 57829644 T C ZNF831 Missense_Mutation p.V1627A 0.32 tolerated(0.1) benign(0.034) TCGA-49-6767-01 20 61981902 61981902 G C CHRNA4 Silent p.V287V 0.23 TCGA-49-6767-01 20 61982063 61982063 T C CHRNA4 Missense_Mutation p.T234A 0.34 deleterious(0) probably_damaging(0.997) TCGA-49-6767-01 21 10910328 10910328 C G TPTE Silent p.V476V 0.11 TCGA-49-6767-01 21 11047544 11047544 C A BAGE2 RNA 0.04 TCGA-49-6767-01 21 15352034 15352034 G C ANKRD20A11P RNA 0.40 TCGA-49-6767-01 21 31859528 31859528 C A KRTAP19-2 Missense_Mutation p.R47I 0.29 deleterious_low_confidence(0) unknown(0) TCGA-49-6767-01 21 31864067 31864067 G A KRTAP19-3 Missense_Mutation p.S70L 0.41 tolerated_low_confidence(1) unknown(0) TCGA-49-6767-01 21 32253560 32253560 G T KRTAP11-1 Missense_Mutation p.P95H 0.14 deleterious(0) probably_damaging(0.983) TCGA-49-6767-01 21 47783764 47783764 G T PCNT Nonsense_Mutation p.E842* 0.10 TCGA-49-6767-01 22 17447089 17447089 C A GAB4 Missense_Mutation p.G397C 0.17 deleterious(0.04) possibly_damaging(0.624) TCGA-49-6767-01 22 20781790 20781790 G A SCARF2 Missense_Mutation p.P535S 0.11 deleterious(0) possibly_damaging(0.831) TCGA-49-6767-01 22 23241833 23241833 T C IGLL5 3'Flank 0.07 TCGA-49-6767-01 22 23247203 23247203 T C IGLJ3 Missense_Mutation p.L50P 0.06 deleterious_low_confidence(0) possibly_damaging(0.887) TCGA-49-6767-01 22 23438319 23438319 A - GNAZ Frame_Shift_Del p.E146Gfs*12 0.11 TCGA-49-6767-01 22 25115791 25115791 T C PIWIL3 Missense_Mutation p.Y819C 0.08 deleterious(0) probably_damaging(0.979) TCGA-49-6767-01 22 29745310 29745311 - G AP1B1 Frame_Shift_Ins p.R445Pfs*20 0.39 TCGA-49-6767-01 22 44967363 44967363 G A LINC00207 RNA 0.15 TCGA-49-6767-01 22 50724601 50724601 C T PLXNB2 Splice_Site p.X626_splice 0.10 TCGA-49-6767-01 2 113089652 113089652 G T ZC3H6 Missense_Mutation p.D1053Y 0.24 tolerated(0.05) possibly_damaging(0.736) TCGA-49-6767-01 2 113417307 113417307 T C SLC20A1 Silent p.F525F 0.35 TCGA-49-6767-01 2 114386279 114386279 G T RABL2A Silent p.V32V 0.20 TCGA-49-6767-01 2 11484250 11484250 G A ROCK2 Missense_Mutation p.P5S 0.38 tolerated_low_confidence(0.31) benign(0.005) TCGA-49-6767-01 2 120725423 120725423 G A PTPN4 Missense_Mutation p.G857R 0.30 deleterious(0) probably_damaging(0.982) TCGA-49-6767-01 2 121554950 121554950 G T GLI2 Silent p.G18G 0.34 TCGA-49-6767-01 2 121708821 121708821 C A GLI2 Missense_Mutation p.P86H 0.29 deleterious(0) probably_damaging(0.999) TCGA-49-6767-01 2 128346070 128346070 A G MYO7B Silent p.A598A 0.14 TCGA-49-6767-01 2 131883346 131883346 A T PLEKHB2 Nonsense_Mutation p.K20* 0.20 TCGA-49-6767-01 2 133541592 133541592 G T NCKAP5 Missense_Mutation p.P931H 0.17 deleterious(0.01) probably_damaging(0.946) TCGA-49-6767-01 2 138169390 138169390 C A THSD7B Silent p.A969A 0.32 TCGA-49-6767-01 2 141625343 141625343 A T LRP1B Silent p.G1465G 0.41 TCGA-49-6767-01 2 16082194 16082194 G T MYCN Missense_Mutation p.S3I 0.16 deleterious_low_confidence(0) possibly_damaging(0.515) TCGA-49-6767-01 2 167322326 167322326 A T SCN7A Missense_Mutation p.L279Q 0.13 deleterious(0.03) probably_damaging(0.938) TCGA-49-6767-01 2 169763212 169763212 T G G6PC2 Missense_Mutation p.I160S 0.37 deleterious(0) possibly_damaging(0.661) TCGA-49-6767-01 2 170063626 170063626 T C LRP2 Missense_Mutation p.R2202G 0.18 probably_damaging(1) TCGA-49-6767-01 2 175268882 175268882 G A SCRN3 Missense_Mutation p.R198Q 0.09 tolerated(0.29) benign(0.016) TCGA-49-6767-01 2 17696481 17696481 G T RAD51AP2 Missense_Mutation p.P1068T 0.15 tolerated(0.39) possibly_damaging(0.575) TCGA-49-6767-01 2 182543486 182543486 G A NEUROD1 Silent p.H34H 0.19 TCGA-49-6767-01 2 185802769 185802769 C A ZNF804A Missense_Mutation p.H882Q 0.33 tolerated(0.57) benign(0.094) TCGA-49-6767-01 2 186671625 186671625 T A FSIP2 Silent p.P5953P 0.09 TCGA-49-6767-01 2 187692918 187692918 C A ZSWIM2 Missense_Mutation p.E565D 0.24 tolerated(0.27) benign(0.101) TCGA-49-6767-01 2 189599658 189599658 G T DIRC1 5'UTR 0.08 TCGA-49-6767-01 2 189856407 189856407 G C COL3A1 Missense_Mutation p.A304P 0.11 unknown(0) TCGA-49-6767-01 2 191159310 191159310 G A HIBCH Missense_Mutation p.A89V 0.36 tolerated(0.11) benign(0.04) TCGA-49-6767-01 2 192700895 192700895 G A SDPR Silent p.S344S 0.34 TCGA-49-6767-01 2 192701129 192701129 C G SDPR Missense_Mutation p.E266D 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-49-6767-01 2 201726036 201726036 A G CLK1 Silent p.S147S 0.29 TCGA-49-6767-01 2 207436511 207436511 G T ADAM23 Missense_Mutation p.G543W 0.38 deleterious(0) probably_damaging(0.999) TCGA-49-6767-01 2 209030479 209030479 C A C2orf80 3'UTR 0.32 TCGA-49-6767-01 2 209045986 209045986 C G C2orf80 Missense_Mutation p.E84Q 0.33 deleterious(0.03) possibly_damaging(0.801) TCGA-49-6767-01 2 212522492 212522492 G T ERBB4 Missense_Mutation p.P645T 0.10 tolerated(0.21) benign(0.01) TCGA-49-6767-01 2 213886733 213886733 C G IKZF2 Missense_Mutation p.Q232H 0.34 tolerated(0.31) possibly_damaging(0.736) TCGA-49-6767-01 2 218713343 218713343 G A TNS1 Nonsense_Mutation p.Q508* 0.21 TCGA-49-6767-01 2 220164027 220164027 C A PTPRN Missense_Mutation p.G535W 0.13 deleterious(0.02) probably_damaging(0.963) TCGA-49-6767-01 2 227662710 227662710 T G IRS1 Missense_Mutation p.M249L 0.19 tolerated(0.09) possibly_damaging(0.851) TCGA-49-6767-01 2 228883814 228883814 T G SPHKAP Missense_Mutation p.S586R 0.19 tolerated(0.09) benign(0.019) TCGA-49-6767-01 2 229046284 229046284 T A SPHKAP Missense_Mutation p.S11C 0.17 deleterious(0) probably_damaging(0.935) TCGA-49-6767-01 2 231311581 231311581 G T SP100 Nonsense_Mutation p.E163* 0.17 TCGA-49-6767-01 2 234365975 234365975 G C DGKD Splice_Site p.X860_splice 0.15 TCGA-49-6767-01 2 24443819 24443819 C A ITSN2 Missense_Mutation p.V1232F 0.11 tolerated(0.28) unknown(0) TCGA-49-6767-01 2 29498008 29498008 G C ALK Silent p.P666P 0.17 TCGA-49-6767-01 2 29498359 29498359 G A ALK Silent p.F607F 0.35 TCGA-49-6767-01 2 33246225 33246225 C A LTBP1 Missense_Mutation p.T272N 0.15 tolerated(0.09) possibly_damaging(0.563) TCGA-49-6767-01 2 33952176 33952176 T A AC009499.1 Intron 0.50 TCGA-49-6767-01 2 37008872 37008875 GAGA TTT VIT Frame_Shift_Del p.E269Ffs*12 0.10 TCGA-49-6767-01 2 54114547 54114547 T A PSME4 Silent p.I1526I 0.19 TCGA-49-6767-01 2 7035912 7035912 C A RSAD2 Missense_Mutation p.R309S 0.14 deleterious(0.02) possibly_damaging(0.885) TCGA-49-6767-01 2 71577285 71577285 G T ZNF638 Missense_Mutation p.A401S 0.14 tolerated(0.12) possibly_damaging(0.459) TCGA-49-6767-01 2 74043796 74043796 A G C2orf78 Missense_Mutation p.K816E 0.16 tolerated(0.05) benign(0.045) TCGA-49-6767-01 2 74690191 74690191 C A MOGS Intron 0.13 TCGA-49-6767-01 2 90121685 90121685 C T IGKV1D-17 Silent p.L10L 0.11 TCGA-49-6767-01 2 90121955 90121955 T A IGKV1D-17 Missense_Mutation p.F58Y 0.13 tolerated(1) benign(0) TCGA-49-6767-01 3 105266233 105266233 G T ALCAM Splice_Site p.X414_splice 0.50 TCGA-49-6767-01 3 105266234 105266234 G T ALCAM Missense_Mutation p.G414V 0.50 deleterious(0.02) probably_damaging(1) TCGA-49-6767-01 3 111700675 111700675 C G ABHD10 Missense_Mutation p.L63V 0.48 tolerated(0.19) possibly_damaging(0.722) TCGA-49-6767-01 3 113866281 113866281 C G DRD3 Silent p.L169L 0.45 TCGA-49-6767-01 3 119236107 119236107 C T TIMMDC1 Nonsense_Mutation p.Q218* 0.57 TCGA-49-6767-01 3 126211293 126211293 T C UROC1 Missense_Mutation p.I586V 0.56 deleterious(0.03) benign(0.049) TCGA-49-6767-01 3 147114033 147114033 G T ZIC4 Nonsense_Mutation p.Y148* 0.53 TCGA-49-6767-01 3 157271098 157271098 A T C3orf55 Missense_Mutation p.T18S 0.86 tolerated_low_confidence(0.27) benign(0.006) TCGA-49-6767-01 3 164906575 164906575 G T SLITRK3 Missense_Mutation p.R682S 0.54 deleterious(0.02) possibly_damaging(0.468) TCGA-49-6767-01 3 173322580 173322580 G T NLGN1 Silent p.G64G 0.57 TCGA-49-6767-01 3 175520882 175520882 A T NAALADL2 Missense_Mutation p.E760V 0.52 deleterious(0) possibly_damaging(0.83) TCGA-49-6767-01 3 187416656 187416656 C A RTP2 Missense_Mutation p.R103L 0.56 tolerated(0.14) possibly_damaging(0.647) TCGA-49-6767-01 3 194366963 194366963 C A LSG1 Missense_Mutation p.G518V 0.12 deleterious(0) probably_damaging(0.998) TCGA-49-6767-01 3 44496980 44496980 C A ZNF445 Missense_Mutation p.G21V 0.51 deleterious_low_confidence(0.04) probably_damaging(0.953) TCGA-49-6767-01 3 49055934 49055934 C G DALRD3 Missense_Mutation p.G22R 0.33 tolerated(0.12) possibly_damaging(0.807) TCGA-49-6767-01 3 51864584 51864584 C A IQCF3 Silent p.R78R 0.49 TCGA-49-6767-01 3 51968721 51968721 C G RRP9 Missense_Mutation p.G369A 0.63 tolerated(0.18) benign(0.421) TCGA-49-6767-01 3 52802578 52802578 C A NEK4 Nonsense_Mutation p.E46* 0.51 TCGA-49-6767-01 3 97888150 97888150 T A OR5H15 Missense_Mutation p.S203T 0.16 deleterious(0.01) possibly_damaging(0.672) TCGA-49-6767-01 4 10445318 10445318 G C ZNF518B Missense_Mutation p.L879V 0.11 tolerated(0.31) benign(0.009) TCGA-49-6767-01 4 10566338 10566338 G C CLNK Missense_Mutation p.S119C 0.18 deleterious(0) benign(0.371) TCGA-49-6767-01 4 106158576 106158576 G T TET2 Intron 0.10 TCGA-49-6767-01 4 107156448 107156448 C A TBCK Missense_Mutation p.W476L 0.30 deleterious(0) probably_damaging(1) TCGA-49-6767-01 4 109745304 109745304 G A COL25A1 Intron 0.20 TCGA-49-6767-01 4 111539486 111539486 C T PITX2 Missense_Mutation p.S257N 0.37 tolerated(0.45) benign(0) TCGA-49-6767-01 4 123184651 123184651 C T KIAA1109 Missense_Mutation p.S2346L 0.21 benign(0.293) TCGA-49-6767-01 4 126336245 126336245 G T FAT4 Missense_Mutation p.D2043Y 0.23 probably_damaging(0.999) TCGA-49-6767-01 4 148744109 148744109 G T ARHGAP10 Splice_Site p.X104_splice 0.29 TCGA-49-6767-01 4 156787352 156787352 T C ASIC5 Silent p.V9V 0.27 TCGA-49-6767-01 4 15733498 15733498 C A BST1 3'UTR 0.33 TCGA-49-6767-01 4 158262431 158262431 C A GRIA2 Silent p.R620R 0.15 TCGA-49-6767-01 4 164394955 164394955 T C TKTL2 5'UTR 0.27 TCGA-49-6767-01 4 170345816 170345816 G A NEK1 Missense_Mutation p.P1037L 0.27 tolerated(0.46) benign(0.008) TCGA-49-6767-01 4 185679038 185679038 T C ACSL1 Missense_Mutation p.T607A 0.09 tolerated(0.16) benign(0.001) TCGA-49-6767-01 4 187077278 187077278 G A FAM149A Missense_Mutation p.V170I 0.20 tolerated(0.7) benign(0.05) TCGA-49-6767-01 4 2698298 2698298 G A FAM193A Missense_Mutation p.R871Q 0.12 deleterious(0) benign(0.226) TCGA-49-6767-01 4 36149351 36149351 A T ARAP2 Missense_Mutation p.F1006L 0.39 tolerated(0.31) benign(0) TCGA-49-6767-01 4 40115128 40115128 G T N4BP2 Missense_Mutation p.R555M 0.33 deleterious(0) probably_damaging(1) TCGA-49-6767-01 4 46099303 46099303 G T GABRG1 Silent p.A56A 0.27 TCGA-49-6767-01 4 5170126 5170126 G T STK32B Missense_Mutation p.R70L 0.24 deleterious(0) probably_damaging(0.999) TCGA-49-6767-01 4 55131107 55131107 A T PDGFRA Missense_Mutation p.E217V 0.06 deleterious(0.03) probably_damaging(1) TCGA-49-6767-01 4 5750028 5750028 G T EVC Missense_Mutation p.A365S 0.27 tolerated(0.05) benign(0.037) TCGA-49-6767-01 4 70146539 70146539 A T UGT2B28 Missense_Mutation p.L107F 0.22 deleterious(0.05) benign(0.005) TCGA-49-6767-01 4 70146540 70146540 T C UGT2B28 Missense_Mutation p.Y108H 0.22 tolerated(0.16) benign(0.03) TCGA-49-6767-01 4 70352326 70352326 C G UGT2B4 Splice_Site p.X364_splice 0.11 TCGA-49-6767-01 4 72897572 72897572 G T NPFFR2 5'UTR 0.30 TCGA-49-6767-01 4 88731895 88731895 T A IBSP Silent p.A128A 0.23 TCGA-49-6767-01 4 89414161 89414161 A T HERC5 Splice_Site p.X712_splice 0.12 TCGA-49-6767-01 4 96090407 96090407 A CCT UNC5C Nonsense_Mutation p.L925* 0.27 TCGA-49-6767-01 5 127700347 127700347 G T FBN2 Missense_Mutation p.R792S 0.36 deleterious(0) probably_damaging(0.963) TCGA-49-6767-01 5 149357616 149357616 G T SLC26A2 Missense_Mutation p.G134V 0.40 deleterious(0) probably_damaging(0.996) TCGA-49-6767-01 5 153390880 153390880 C A FAM114A2 Missense_Mutation p.G305V 0.49 deleterious(0.02) possibly_damaging(0.883) TCGA-49-6767-01 5 180338550 180338550 C A BTNL8 Missense_Mutation p.S203R 0.35 deleterious(0.01) benign(0.289) TCGA-49-6767-01 5 21783506 21783506 T G CDH12 Missense_Mutation p.T452P 0.14 tolerated(0.27) benign(0.4) TCGA-49-6767-01 5 35779385 35779385 G T SPEF2 Missense_Mutation p.G1462C 0.15 deleterious(0) probably_damaging(0.996) TCGA-49-6767-01 5 35876570 35876570 C A IL7R Missense_Mutation p.S454R 0.20 deleterious(0) probably_damaging(1) TCGA-49-6767-01 5 40945338 40945338 T C C7 Silent p.N202N 0.40 TCGA-49-6767-01 5 434671 434671 A T AHRR Missense_Mutation p.R628W 0.25 deleterious(0) possibly_damaging(0.812) TCGA-49-6767-01 5 68670537 68670537 A T RAD17 Missense_Mutation p.Q128L 0.44 deleterious(0.02) benign(0.002) TCGA-49-6767-01 5 79855837 79855837 A G ANKRD34B Translation_Start_Site p.M1? 0.35 deleterious(0) probably_damaging(0.998) TCGA-49-6767-01 5 87502892 87502892 T A TMEM161B Silent p.A184A 0.26 TCGA-49-6767-01 6 100838294 100838294 T G SIM1 Missense_Mutation p.Q748H 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.556) TCGA-49-6767-01 6 100838543 100838543 G T SIM1 Silent p.R665R 0.30 TCGA-49-6767-01 6 102074265 102074265 G T GRIK2 Missense_Mutation p.Q98H 0.28 deleterious(0.01) probably_damaging(0.966) TCGA-49-6767-01 6 106968029 106968029 A T AIM1 Missense_Mutation p.R574S 0.31 tolerated_low_confidence(0.06) benign(0.043) TCGA-49-6767-01 6 112460960 112460960 C T LAMA4 Missense_Mutation p.C1035Y 0.20 deleterious(0) probably_damaging(0.928) TCGA-49-6767-01 6 117686772 117686772 T A ROS1 Missense_Mutation p.Y982F 0.25 deleterious(0) probably_damaging(0.997) TCGA-49-6767-01 6 133849873 133849873 C A EYA4 Missense_Mutation p.P617H 0.20 deleterious(0) probably_damaging(1) TCGA-49-6767-01 6 136599694 136599694 G T BCLAF1 Missense_Mutation p.R109S 0.20 tolerated_low_confidence(0.11) unknown(0) TCGA-49-6767-01 6 136599790 136599790 C A BCLAF1 Missense_Mutation p.G77C 0.12 deleterious_low_confidence(0) unknown(0) TCGA-49-6767-01 6 139564044 139564044 G T TXLNB Silent p.P558P 0.33 TCGA-49-6767-01 6 142409829 142409829 C T NMBR 5'UTR 0.18 TCGA-49-6767-01 6 145948691 145948691 C T EPM2A Missense_Mutation p.G286D 0.18 tolerated(0.09) probably_damaging(0.993) TCGA-49-6767-01 6 146350550 146350550 C - GRM1 5'UTR 0.33 TCGA-49-6767-01 6 146747740 146747740 A G GRM1 Intron 0.35 TCGA-49-6767-01 6 148761494 148761494 G T SASH1 Nonsense_Mutation p.E113* 0.25 TCGA-49-6767-01 6 148840928 148840928 G T SASH1 Missense_Mutation p.G370W 0.39 deleterious_low_confidence(0) probably_damaging(1) TCGA-49-6767-01 6 152542080 152542080 G A SYNE1 Missense_Mutation p.S7253L 0.05 benign(0.007) TCGA-49-6767-01 6 152623136 152623136 C T SYNE1 Silent p.K5803K 0.34 TCGA-49-6767-01 6 152658015 152658015 C T SYNE1 Silent p.L4163L 0.26 TCGA-49-6767-01 6 155764448 155764448 G T NOX3 Missense_Mutation p.P149T 0.33 tolerated(0.16) possibly_damaging(0.745) TCGA-49-6767-01 6 25777157 25777157 C G SLC17A4 Missense_Mutation p.A413G 0.25 deleterious(0.02) possibly_damaging(0.744) TCGA-49-6767-01 6 25777188 25777188 G T SLC17A4 Splice_Site p.X423_splice 0.22 TCGA-49-6767-01 6 25813412 25813412 A T SLC17A1 Missense_Mutation p.W216R 0.23 deleterious(0) possibly_damaging(0.746) TCGA-49-6767-01 6 26413835 26413835 T C BTN3A1 Missense_Mutation p.L486P 0.21 tolerated(1) benign(0.005) TCGA-49-6767-01 6 27107390 27107390 C G HIST1H4I Missense_Mutation p.F101L 0.22 tolerated(0.08) benign(0.188) TCGA-49-6767-01 6 27115267 27115267 G A HIST1H2AH Silent p.K120K 0.17 TCGA-49-6767-01 6 29142112 29142112 G T OR2J2 Missense_Mutation p.G234W 0.28 deleterious(0) probably_damaging(0.998) TCGA-49-6767-01 6 30675788 30675788 T A MDC1 Missense_Mutation p.K856N 0.28 deleterious(0) benign(0.005) TCGA-49-6767-01 6 348120 348120 G T DUSP22 Missense_Mutation p.R94M 0.07 deleterious(0) probably_damaging(1) TCGA-49-6767-01 6 37623622 37623622 C T MDGA1 Missense_Mutation p.G145S 0.40 tolerated(0.34) probably_damaging(1) TCGA-49-6767-01 6 43267478 43267478 G T SLC22A7 Missense_Mutation p.G206V 0.36 deleterious(0) probably_damaging(1) TCGA-49-6767-01 6 47754282 47754282 C T OPN5 Silent p.V54V 0.27 TCGA-49-6767-01 6 47846147 47846147 G A PTCHD4 Silent p.P811P 0.32 TCGA-49-6767-01 6 49754640 49754640 G A PGK2 Silent p.S87S 0.24 TCGA-49-6767-01 6 54219385 54219385 G T TINAG Nonsense_Mutation p.E401* 0.21 TCGA-49-6767-01 6 55216299 55216299 A T GFRAL Missense_Mutation p.S207C 0.24 deleterious(0.02) probably_damaging(0.996) TCGA-49-6767-01 6 56328453 56328453 T A DST Silent p.S4976S 0.29 TCGA-49-6767-01 6 56371508 56371508 C A DST Missense_Mutation p.C3817F 0.30 probably_damaging(1) TCGA-49-6767-01 6 56510720 56510720 C - DST 5'Flank 0.22 TCGA-49-6767-01 6 73933460 73933460 C T KHDC1L 3'UTR 0.21 TCGA-49-6767-01 6 74072525 74072525 G C KHDC3L Missense_Mutation p.G25R 0.30 deleterious(0) probably_damaging(0.997) TCGA-49-6767-01 6 75875291 75875291 C A COL12A1 Missense_Mutation p.R972I 0.28 benign(0.15) TCGA-49-6767-01 6 75901414 75901414 C A COL12A1 Intron 0.20 TCGA-49-6767-01 6 80878601 80878601 G A BCKDHB Missense_Mutation p.E163K 0.16 deleterious(0) probably_damaging(0.909) TCGA-49-6767-01 6 83829489 83829489 C T DOPEY1 Silent p.I301I 0.09 TCGA-49-6767-01 6 90499592 90499592 T A MDN1 Silent p.G379G 0.19 TCGA-49-6767-01 7 100683533 100683533 A G MUC17 Missense_Mutation p.S2946G 0.06 probably_damaging(0.977) TCGA-49-6767-01 7 102097955 102097955 G A ALKBH4 Silent p.R265R 0.06 TCGA-49-6767-01 7 107399544 107399544 T C CBLL1 Missense_Mutation p.L466S 0.27 tolerated(0.13) benign(0.004) TCGA-49-6767-01 7 107596050 107596050 G T LAMB1 Missense_Mutation p.P906T 0.35 deleterious(0.03) benign(0.279) TCGA-49-6767-01 7 107790398 107790398 G T NRCAM Nonsense_Mutation p.S1291* 0.71 TCGA-49-6767-01 7 111580244 111580244 G C DOCK4 Missense_Mutation p.P300A 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-49-6767-01 7 117828412 117828412 G T NAA38 Silent p.G51G 0.55 TCGA-49-6767-01 7 12271647 12271647 C T TMEM106B 3'UTR 0.43 TCGA-49-6767-01 7 124387384 124387384 C A GPR37 Missense_Mutation p.G346V 0.16 deleterious(0) probably_damaging(1) TCGA-49-6767-01 7 131913210 131913210 C A PLXNA4 Silent p.R541R 0.33 TCGA-49-6767-01 7 138455936 138455936 C G ATP6V0A4 Silent p.V19V 0.14 TCGA-49-6767-01 7 13935690 13935690 T C ETV1 Missense_Mutation p.Y412C 0.28 deleterious(0) probably_damaging(0.999) TCGA-49-6767-01 7 142001010 142001010 G A TRBV2 Translation_Start_Site p.M1? 0.53 TCGA-49-6767-01 7 142149188 142149188 G T TRBV5-5 Missense_Mutation p.T28K 0.41 tolerated(0.33) benign(0.002) TCGA-49-6767-01 7 142566876 142566876 G T EPHB6 Silent p.V811V 0.62 TCGA-49-6767-01 7 142658913 142658913 G T KEL Missense_Mutation p.A17E 0.15 deleterious_low_confidence(0.03) benign(0.086) TCGA-49-6767-01 7 149421940 149421940 G A KRBA1 Missense_Mutation p.A376T 0.53 deleterious(0) probably_damaging(0.981) TCGA-49-6767-01 7 150163991 150163991 C A GIMAP8 Missense_Mutation p.L69I 0.06 tolerated(0.13) possibly_damaging(0.9) TCGA-49-6767-01 7 19184872 19184872 G T FERD3L Silent p.S38S 0.29 TCGA-49-6767-01 7 20685744 20685744 A G ABCB5 Missense_Mutation p.I322V 0.19 tolerated(0.33) benign(0.159) TCGA-49-6767-01 7 21646324 21646324 A C DNAH11 Silent p.A1275A 0.36 TCGA-49-6767-01 7 27134888 27134888 G T HOXA1 Missense_Mutation p.P215H 0.34 deleterious(0) probably_damaging(0.997) TCGA-49-6767-01 7 27147727 27147727 G T HOXA3 Missense_Mutation p.P380Q 0.30 deleterious(0) possibly_damaging(0.682) TCGA-49-6767-01 7 27148137 27148137 G T HOXA3 Silent p.R243R 0.23 TCGA-49-6767-01 7 38247244 38247244 G A STARD3NL Missense_Mutation p.G47S 0.25 tolerated(0.11) benign(0.005) TCGA-49-6767-01 7 4169723 4169723 G A SDK1 Missense_Mutation p.D1375N 0.13 deleterious(0) possibly_damaging(0.817) TCGA-49-6767-01 7 48443428 48443428 C A ABCA13 Missense_Mutation p.P4008T 0.21 probably_damaging(0.98) TCGA-49-6767-01 7 4917441 4917441 G T RADIL Nonsense_Mutation p.Y110* 0.37 TCGA-49-6767-01 7 5024663 5024663 G - RBAK-RBAKDN 5'UTR 0.24 TCGA-49-6767-01 7 53103916 53103916 G T POM121L12 Missense_Mutation p.Q184H 0.47 deleterious(0.01) possibly_damaging(0.843) TCGA-49-6767-01 7 71743772 71743772 A T CALN1 Missense_Mutation p.V48E 0.53 tolerated(0.08) probably_damaging(0.994) TCGA-49-6767-01 7 73731815 73731815 T A CLIP2 5'UTR 0.15 TCGA-49-6767-01 7 82538323 82538323 T C PCLO Missense_Mutation p.H4436R 0.10 unknown(0) TCGA-49-6767-01 7 84636143 84636143 C A SEMA3D Missense_Mutation p.R628M 0.45 deleterious(0) possibly_damaging(0.784) TCGA-49-6767-01 7 86544146 86544146 C A KIAA1324L Nonsense_Mutation p.E542* 0.10 TCGA-49-6767-01 7 89859319 89859320 CT A STEAP2 Frame_Shift_Del p.A385Dfs*2 0.11 TCGA-49-6767-01 7 99129089 99129089 T A ZKSCAN5 Nonsense_Mutation p.C579* 0.28 TCGA-49-6767-01 8 100182372 100182372 C T VPS13B Silent p.L772L 0.16 TCGA-49-6767-01 8 105001577 105001577 G A RIMS2 Missense_Mutation p.G991E 0.24 tolerated_low_confidence(0.47) benign(0.008) TCGA-49-6767-01 8 110131489 110131489 C T TRHR Silent p.L334L 0.30 TCGA-49-6767-01 8 113348921 113348921 C G CSMD3 Missense_Mutation p.V2327L 0.27 tolerated(1) benign(0.101) TCGA-49-6767-01 8 113364763 113364763 G T CSMD3 Missense_Mutation p.A2046E 0.36 deleterious(0.03) possibly_damaging(0.864) TCGA-49-6767-01 8 113484937 113484937 C A CSMD3 Splice_Site p.X1760_splice 0.33 TCGA-49-6767-01 8 121706136 121706136 C G SNTB1 Missense_Mutation p.R195P 0.43 deleterious(0.02) benign(0.308) TCGA-49-6767-01 8 122626567 122626567 C A HAS2 Missense_Mutation p.V481L 0.31 tolerated(1) benign(0.008) TCGA-49-6767-01 8 123963750 123963750 C T ZHX2 5'UTR 0.29 TCGA-49-6767-01 8 134225219 134225219 G A WISP1 Missense_Mutation p.R61H 0.31 tolerated(0.16) benign(0.094) TCGA-49-6767-01 8 143928046 143928046 G T GML Silent p.L139L 0.40 TCGA-49-6767-01 8 143957731 143957731 G T CYP11B1 Missense_Mutation p.L294M 0.35 tolerated(0.24) possibly_damaging(0.718) TCGA-49-6767-01 8 145622835 145622835 G A CPSF1 Missense_Mutation p.S751L 0.18 deleterious(0.04) benign(0.158) TCGA-49-6767-01 8 145998963 145998963 G C ZNF34 Missense_Mutation p.S457R 0.25 tolerated(0.14) benign(0.443) TCGA-49-6767-01 8 16956024 16956024 C G MICU3 Missense_Mutation p.R316G 0.39 tolerated(0.11) benign(0.383) TCGA-49-6767-01 8 39613420 39613420 A G ADAM2 Missense_Mutation p.C542R 0.06 deleterious(0) probably_damaging(1) TCGA-49-6767-01 8 41519012 41519012 C A ANK1 Intron 0.18 TCGA-49-6767-01 8 41526069 41526069 C A ANK1 Missense_Mutation p.D1745Y 0.19 tolerated_low_confidence(0.05) benign(0.012) TCGA-49-6767-01 8 49637178 49637178 G C EFCAB1 3'UTR 0.50 TCGA-49-6767-01 8 69046421 69046421 G T PREX2 Missense_Mutation p.M1298I 0.32 tolerated(0.06) benign(0.006) TCGA-49-6767-01 8 71495976 71495976 G A TRAM1 Missense_Mutation p.L267F 0.31 deleterious(0) probably_damaging(0.965) TCGA-49-6767-01 8 72987748 72987748 C A TRPA1 5'UTR 0.46 TCGA-49-6767-01 8 74868148 74868148 G T TCEB1 Missense_Mutation p.P49Q 0.33 tolerated(0.06) possibly_damaging(0.724) TCGA-49-6767-01 8 77763493 77763493 G A ZFHX4 Missense_Mutation p.A1446T 0.33 possibly_damaging(0.682) TCGA-49-6767-01 8 92406044 92406044 G T SLC26A7 Missense_Mutation p.G599V 0.28 tolerated(0.18) benign(0.047) TCGA-49-6767-01 8 94747803 94747803 C A RBM12B Missense_Mutation p.R279L 0.33 deleterious(0.02) benign(0.069) TCGA-49-6767-01 9 104432627 104432627 G A GRIN3A Silent p.A689A 0.49 TCGA-49-6767-01 9 107266855 107266855 C T OR13F1 Silent p.S104S 0.31 TCGA-49-6767-01 9 107380045 107380045 C G OR13C9 Silent p.G147G 0.28 TCGA-49-6767-01 9 109687218 109687218 C G ZNF462 Missense_Mutation p.S342C 0.26 possibly_damaging(0.7) TCGA-49-6767-01 9 111617550 111617550 G T ACTL7B Missense_Mutation p.R221S 0.24 deleterious(0.03) possibly_damaging(0.449) TCGA-49-6767-01 9 117138926 117138926 C A AKNA Missense_Mutation p.K387N 0.27 deleterious(0.04) benign(0.021) TCGA-49-6767-01 9 120476015 120476015 A T TLR4 Missense_Mutation p.T537S 0.38 tolerated(0.42) benign(0.003) TCGA-49-6767-01 9 131356466 131356466 G T SPTAN1 Silent p.L1076L 0.27 TCGA-49-6767-01 9 131502332 131502332 G A ZER1 Silent p.H640H 0.19 TCGA-49-6767-01 9 135947097 135947098 - C CEL Frame_Shift_Ins p.T742Hfs*3 0.31 TCGA-49-6767-01 9 35376131 35376131 A G UNC13B Missense_Mutation p.Y492C 0.42 deleterious(0.02) probably_damaging(0.998) TCGA-49-6767-01 9 84534412 84534412 C A SPATA31D5P RNA 0.22 TCGA-49-6767-01 X 100183084 100183084 G C XKRX Silent p.T70T 0.43 TCGA-49-6767-01 X 101857749 101857749 C A ARMCX5 Missense_Mutation p.A227D 0.07 tolerated(0.05) benign(0.009) TCGA-49-6767-01 X 102004609 102004609 C G BHLHB9 Missense_Mutation p.A229G 0.18 tolerated(0.26) possibly_damaging(0.882) TCGA-49-6767-01 X 102529194 102529194 G T TCEAL5 Missense_Mutation p.P100T 0.09 tolerated(0.57) benign(0.054) TCGA-49-6767-01 X 103080375 103080375 G A RAB9B Missense_Mutation p.P114S 0.47 deleterious(0.04) possibly_damaging(0.567) TCGA-49-6767-01 X 107978507 107978507 G T IRS4 Silent p.S356S 0.07 TCGA-49-6767-01 X 108911376 108911376 C A ACSL4 Missense_Mutation p.Q464H 0.05 deleterious(0) probably_damaging(0.972) TCGA-49-6767-01 X 11204553 11204553 T C ARHGAP6 Splice_Site p.X360_splice 0.07 TCGA-49-6767-01 X 119394645 119394645 A T TMEM255A 3'UTR 0.48 TCGA-49-6767-01 X 119760065 119760065 T A C1GALT1C1 Nonstop_Mutation p.*319Cext*53 0.48 TCGA-49-6767-01 X 123210221 123210221 T C STAG2 Missense_Mutation p.L858P 0.07 deleterious(0) probably_damaging(1) TCGA-49-6767-01 X 123515010 123515010 G C TENM1 Silent p.V2525V 0.09 TCGA-49-6767-01 X 125299761 125299761 G A DCAF12L2 Silent p.R49R 0.49 TCGA-49-6767-01 X 128881584 128881584 C A XPNPEP2 Missense_Mutation p.D164E 0.48 tolerated(0.23) benign(0.009) TCGA-49-6767-01 X 130217848 130217848 G A ARHGAP36 Missense_Mutation p.V154M 0.07 tolerated(0.24) possibly_damaging(0.541) TCGA-49-6767-01 X 130416645 130416645 C A IGSF1 Missense_Mutation p.S340I 0.07 deleterious(0.04) probably_damaging(0.956) TCGA-49-6767-01 X 134680668 134680668 A T DDX26B Silent p.L157L 0.48 TCGA-49-6767-01 X 135428834 135428834 T C GPR112 Missense_Mutation p.L990S 0.07 tolerated(0.15) benign(0.016) TCGA-49-6767-01 X 136112696 136112696 G T GPR101 Missense_Mutation p.R380S 0.03 deleterious(0.01) possibly_damaging(0.751) TCGA-49-6767-01 X 138643882 138643882 C G F9 Silent p.L346L 0.30 TCGA-49-6767-01 X 141291679 141291679 G T MAGEC2 Missense_Mutation p.T32K 0.44 tolerated(0.15) possibly_damaging(0.788) TCGA-49-6767-01 X 147743758 147743758 G T AFF2 Silent p.L170L 0.08 TCGA-49-6767-01 X 148059973 148059973 G T AFF2 Missense_Mutation p.M1186I 0.45 tolerated(0.5) benign(0.291) TCGA-49-6767-01 X 149945946 149945946 C G CD99L2 Missense_Mutation p.R169P 0.11 tolerated(0.32) benign(0.026) TCGA-49-6767-01 X 151123293 151123293 G A GABRE Silent p.T467T 0.08 TCGA-49-6767-01 X 153039434 153039434 G C PLXNB3 Missense_Mutation p.A1157P 0.37 tolerated(0.17) possibly_damaging(0.77) TCGA-49-6767-01 X 153694838 153694838 C A PLXNA3 Missense_Mutation p.S973R 0.08 tolerated(0.65) benign(0.004) TCGA-49-6767-01 X 154261737 154261737 T A FUNDC2 Missense_Mutation p.W65R 0.03 deleterious(0) probably_damaging(0.968) TCGA-49-6767-01 X 15603664 15603664 C G ACE2 Silent p.L278L 0.06 TCGA-49-6767-01 X 18822086 18822086 A G PPEF1 Missense_Mutation p.Y381C 0.37 deleterious(0.02) possibly_damaging(0.78) TCGA-49-6767-01 X 31462673 31462673 G T DMD Silent p.T3003T 0.10 TCGA-49-6767-01 X 3228872 3228872 C A MXRA5 Missense_Mutation p.G2458W 0.27 deleterious(0.02) probably_damaging(0.981) TCGA-49-6767-01 X 34961736 34961736 C A FAM47B Missense_Mutation p.P263H 0.38 deleterious(0.03) benign(0.058) TCGA-49-6767-01 X 37029346 37029346 G T FAM47C Nonsense_Mutation p.E955* 0.30 TCGA-49-6767-01 X 38226663 38226663 G C OTC Missense_Mutation p.R66T 0.36 tolerated(0.24) probably_damaging(0.995) TCGA-49-6767-01 X 40572200 40572200 C A MED14 Missense_Mutation p.K249N 0.30 tolerated(0.07) benign(0.003) TCGA-49-6767-01 X 47483656 47483656 G T CFP 3'UTR 0.13 TCGA-49-6767-01 X 48921447 48921447 A T CCDC120 Missense_Mutation p.Q80L 0.27 tolerated(0.16) possibly_damaging(0.707) TCGA-49-6767-01 X 51639760 51639760 G A MAGED1 Missense_Mutation p.A393T 0.22 deleterious_low_confidence(0.03) unknown(0) TCGA-49-6767-01 X 51640681 51640681 T A MAGED1 Missense_Mutation p.Y565N 0.06 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-49-6767-01 X 55040070 55040070 T G ALAS2 Silent p.A483A 0.10 TCGA-49-6767-01 X 55479571 55479571 G A MAGEH1 3'UTR 0.27 TCGA-49-6767-01 X 5811275 5811275 G T NLGN4X Silent p.T678T 0.27 TCGA-49-6767-01 X 63412380 63412380 C G AMER1 Missense_Mutation p.E263Q 0.07 tolerated(0.14) benign(0.033) TCGA-49-6767-01 X 63413235 63413235 A T AMER1 5'UTR 0.16 TCGA-49-6767-01 X 68840767 68840767 C T EDA Intron 0.45 TCGA-49-6767-01 X 70627911 70627911 C A TAF1 Missense_Mutation p.R1452S 0.05 deleterious(0) possibly_damaging(0.881) TCGA-49-6767-01 X 70787503 70787503 G T OGT Missense_Mutation p.G915C 0.11 deleterious(0) probably_damaging(1) TCGA-49-6767-01 X 71855067 71855067 C T PHKA1 Missense_Mutation p.C551Y 0.15 tolerated(1) benign(0.073) TCGA-49-6767-01 X 72667527 72667527 C A CDX4 Silent p.A146A 0.34 TCGA-49-6767-01 X 74290242 74290242 C T ABCB7 Missense_Mutation p.M442I 0.07 deleterious(0.02) probably_damaging(0.954) TCGA-49-6767-01 X 75004996 75004996 G C MAGEE2 5'UTR 0.31 TCGA-49-6767-01 X 76937081 76937081 C G ATRX Missense_Mutation p.E1223Q 0.07 probably_damaging(0.953) TCGA-49-6767-01 X 77266706 77266706 G T ATP7A Missense_Mutation p.D635Y 0.05 deleterious(0) probably_damaging(0.982) TCGA-49-6767-01 X 77395109 77395109 G C TAF9B 5'UTR 0.08 TCGA-49-6767-01 X 79980529 79980529 G A BRWD3 Missense_Mutation p.P475L 0.06 deleterious(0) probably_damaging(1) TCGA-49-6767-01 X 82763626 82763626 G A POU3F4 Silent p.S98S 0.35 TCGA-49-6767-01 X 82763897 82763897 C A POU3F4 Missense_Mutation p.P189T 0.61 deleterious(0.04) probably_damaging(0.999) TCGA-49-6767-01 X 88009014 88009014 C A CPXCR1 Nonsense_Mutation p.S200* 0.35 TCGA-49-6767-01 X 89177192 89177192 T A TGIF2LX Missense_Mutation p.N36K 0.41 tolerated(0.09) benign(0.099) TCGA-49-6767-01 X 89177194 89177194 A G TGIF2LX Missense_Mutation p.N37S 0.40 tolerated(0.31) benign(0.003) TCGA-49-AAQV-01 10 45799878 45799878 C G OR13A1 5'UTR 0.05 TCGA-49-AAQV-01 11 102937020 102937020 G A DCUN1D5 Missense_Mutation p.S178L 0.12 tolerated(0.13) benign(0.315) TCGA-49-AAQV-01 11 10827535 10827535 G C EIF4G2 Missense_Mutation p.T56S 0.12 tolerated(0.42) benign(0.304) TCGA-49-AAQV-01 11 14539202 14539202 A G PSMA1 Silent p.D86D 0.10 TCGA-49-AAQV-01 12 122745916 122745916 C T VPS33A Silent p.L125L 0.08 TCGA-49-AAQV-01 12 49438628 49438628 G A KMT2D Missense_Mutation p.P1621L 0.09 possibly_damaging(0.841) TCGA-49-AAQV-01 12 62895469 62895469 C G MON2 Silent p.V260V 0.06 TCGA-49-AAQV-01 12 63544171 63544171 C T AVPR1A Missense_Mutation p.R149H 0.12 deleterious(0) probably_damaging(1) TCGA-49-AAQV-01 12 64615970 64615970 C T C12orf66 Silent p.A16A 0.10 TCGA-49-AAQV-01 13 25268700 25268700 C T ATP12A Missense_Mutation p.S505F 0.15 deleterious(0) probably_damaging(0.922) TCGA-49-AAQV-01 14 53513591 53513591 C T DDHD1 Silent p.S866S 0.07 TCGA-49-AAQV-01 14 75747979 75747979 C T FOS Missense_Mutation p.P332L 0.05 deleterious(0) probably_damaging(1) TCGA-49-AAQV-01 14 91701405 91701405 G C GPR68 5'UTR 0.06 TCGA-49-AAQV-01 14 96993816 96993816 T A PAPOLA Missense_Mutation p.S127R 0.13 deleterious(0.04) benign(0.098) TCGA-49-AAQV-01 14 97014254 97014255 AG T PAPOLA Frame_Shift_Del p.K507Ifs*9 0.14 TCGA-49-AAQV-01 15 67457279 67457279 C A SMAD3 Missense_Mutation p.H85N 0.07 deleterious(0) probably_damaging(0.949) TCGA-49-AAQV-01 15 86182629 86182629 A G AKAP13 Missense_Mutation p.I1396V 0.07 tolerated(0.19) benign(0.099) TCGA-49-AAQV-01 16 27549185 27549185 C A GTF3C1 Missense_Mutation p.M224I 0.14 deleterious(0.01) possibly_damaging(0.871) TCGA-49-AAQV-01 16 74425465 74425465 C A NPIPB15 Silent p.P273P 0.08 TCGA-49-AAQV-01 17 26890451 26890451 G - PIGS Frame_Shift_Del p.Q156Rfs*3 0.19 TCGA-49-AAQV-01 17 26955351 26955351 C A KIAA0100 Missense_Mutation p.S1509I 0.14 tolerated(0.17) benign(0.008) TCGA-49-AAQV-01 17 37607464 37607464 G A MED1 5'UTR 0.29 TCGA-49-AAQV-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.27 tolerated(0.13) possibly_damaging(0.631) TCGA-49-AAQV-01 17 78081374 78081374 G T GAA Silent p.A237A 0.12 TCGA-49-AAQV-01 18 32834108 32834108 C T ZSCAN30 Missense_Mutation p.R264K 0.08 tolerated(1) benign(0) TCGA-49-AAQV-01 18 48604655 48604655 G A SMAD4 Missense_Mutation p.D493N 0.06 deleterious(0) probably_damaging(0.978) TCGA-49-AAQV-01 19 14952204 14952204 C T OR7A10 Missense_Mutation p.M162I 0.07 tolerated_low_confidence(0.05) benign(0.007) TCGA-49-AAQV-01 1 111495169 111495169 C G LRIF1 Missense_Mutation p.D113H 0.08 deleterious(0) probably_damaging(0.979) TCGA-49-AAQV-01 1 145304530 145304530 C G NBPF10 Missense_Mutation p.S488C 0.02 possibly_damaging(0.824) TCGA-49-AAQV-01 1 152278580 152278580 T G FLG Silent p.R2928R 0.19 TCGA-49-AAQV-01 1 161029436 161029436 G C ARHGAP30 Silent p.L56L 0.06 TCGA-49-AAQV-01 1 167097480 167097480 G C DUSP27 Missense_Mutation p.E1038Q 0.14 deleterious(0) probably_damaging(0.998) TCGA-49-AAQV-01 1 168282104 168282104 G T TBX19 Missense_Mutation p.G404V 0.33 deleterious_low_confidence(0.03) benign(0.1) TCGA-49-AAQV-01 1 183190004 183190004 G A LAMC2 Missense_Mutation p.G183D 0.06 deleterious(0) probably_damaging(1) TCGA-49-AAQV-01 1 207872554 207872554 C T CR1L Missense_Mutation p.S388F 0.05 deleterious(0.02) possibly_damaging(0.494) TCGA-49-AAQV-01 1 214171548 214171548 C G PROX1 Missense_Mutation p.S557C 0.14 tolerated(0.11) probably_damaging(0.996) TCGA-49-AAQV-01 1 214818975 214818975 C T CENPF Missense_Mutation p.S2021F 0.06 probably_damaging(0.996) TCGA-49-AAQV-01 1 232650598 232650598 T A SIPA1L2 Missense_Mutation p.D163V 0.18 deleterious(0) probably_damaging(0.999) TCGA-49-AAQV-01 1 248023984 248023984 C A TRIM58 Silent p.A162A 0.25 TCGA-49-AAQV-01 1 32259486 32259486 G A SPOCD1 Missense_Mutation p.S799L 0.08 tolerated(0.48) benign(0.003) TCGA-49-AAQV-01 1 40323037 40323037 C G TRIT1 Missense_Mutation p.R76T 0.05 tolerated(0.22) benign(0.155) TCGA-49-AAQV-01 1 97235416 97235416 G A PTBP2 Silent p.L91L 0.09 TCGA-49-AAQV-01 21 46000124 46000124 C T KRTAP10-5 Missense_Mutation p.C111Y 0.04 deleterious(0.01) unknown(0) TCGA-49-AAQV-01 22 19502309 19502309 G T CDC45 Missense_Mutation p.A451S 0.12 tolerated(0.08) probably_damaging(0.939) TCGA-49-AAQV-01 2 150061828 150061828 G A LYPD6B Missense_Mutation p.A47T 0.12 benign(0.197) TCGA-49-AAQV-01 2 179445252 179445252 A G TTN Missense_Mutation p.V22285A 0.11 TCGA-49-AAQV-01 2 203653802 203653802 C T ICA1L Missense_Mutation p.D332N 0.09 deleterious(0.04) benign(0.038) TCGA-49-AAQV-01 2 228883871 228883871 C T SPHKAP Missense_Mutation p.A567T 0.05 deleterious(0) probably_damaging(1) TCGA-49-AAQV-01 2 38537523 38537523 G C ATL2 Missense_Mutation p.L291V 0.10 tolerated(0.27) benign(0.034) TCGA-49-AAQV-01 2 39088451 39088451 G C DHX57 Nonsense_Mutation p.Y367* 0.07 TCGA-49-AAQV-01 3 155232521 155232521 G C PLCH1 Missense_Mutation p.H529Q 0.14 tolerated(0.13) possibly_damaging(0.638) TCGA-49-AAQV-01 3 167240178 167240178 G C WDR49 Missense_Mutation p.S548C 0.08 tolerated(0.16) possibly_damaging(0.524) TCGA-49-AAQV-01 3 196613396 196613396 C G SENP5 Silent p.L448L 0.05 TCGA-49-AAQV-01 3 52248095 52248095 G C ALAS1 Missense_Mutation p.E608Q 0.06 tolerated(0.09) probably_damaging(0.985) TCGA-49-AAQV-01 4 13475949 13475949 C A RAB28 Missense_Mutation p.G85V 0.10 deleterious(0) probably_damaging(0.995) TCGA-49-AAQV-01 4 160262938 160262938 G C RAPGEF2 Missense_Mutation p.K758N 0.05 deleterious(0.02) probably_damaging(0.926) TCGA-49-AAQV-01 4 77969805 77969805 G C CCNI Missense_Mutation p.S234C 0.20 deleterious(0) possibly_damaging(0.866) TCGA-49-AAQV-01 4 84350821 84350821 C G HELQ Missense_Mutation p.E792Q 0.07 tolerated(0.07) benign(0.066) TCGA-49-AAQV-01 5 153144088 153144088 G A GRIA1 Missense_Mutation p.V650M 0.06 deleterious(0) probably_damaging(1) TCGA-49-AAQV-01 5 161277679 161277679 A G GABRA1 Intron 0.27 TCGA-49-AAQV-01 5 16701809 16701809 C T MYO10 Missense_Mutation p.D899N 0.10 tolerated_low_confidence(0.42) probably_damaging(0.989) TCGA-49-AAQV-01 5 175111066 175111066 G T HRH2 Missense_Mutation p.G277V 0.16 deleterious(0) probably_damaging(1) TCGA-49-AAQV-01 5 37064971 37064971 G A NIPBL Missense_Mutation p.A2798T 0.07 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-49-AAQV-01 5 39394348 39394348 C T DAB2 Silent p.K25K 0.07 TCGA-49-AAQV-01 5 68411752 68411752 G C SLC30A5 Splice_Site p.X262_splice 0.08 TCGA-49-AAQV-01 5 71528290 71528290 C T MRPS27 Missense_Mutation p.A191T 0.20 deleterious(0.04) benign(0.446) TCGA-49-AAQV-01 6 110301221 110301221 C A GPR6 Silent p.G302G 0.07 TCGA-49-AAQV-01 6 152712423 152712423 A G SYNE1 Missense_Mutation p.S2665P 0.11 benign(0.066) TCGA-49-AAQV-01 6 158902251 158902251 C G TULP4 Silent p.L472L 0.09 TCGA-49-AAQV-01 6 38976658 38976658 G A DNAH8 Missense_Mutation p.G4211D 0.12 probably_damaging(0.925) TCGA-49-AAQV-01 6 50681793 50681793 G A TFAP2D Missense_Mutation p.V9I 0.12 tolerated_low_confidence(0.07) benign(0.417) TCGA-49-AAQV-01 6 88854149 88854149 A T CNR1 Missense_Mutation p.V282D 0.19 deleterious(0) probably_damaging(0.958) TCGA-49-AAQV-01 7 107599846 107599846 C A LAMB1 Silent p.V846V 0.10 TCGA-49-AAQV-01 7 135330224 135330224 G C NUP205 Missense_Mutation p.E1898Q 0.05 deleterious(0) probably_damaging(0.994) TCGA-49-AAQV-01 7 148801637 148801637 G C ZNF425 Missense_Mutation p.F442L 0.07 tolerated(0.07) possibly_damaging(0.78) TCGA-49-AAQV-01 7 18706069 18706069 A C HDAC9 Missense_Mutation p.E567D 0.19 tolerated(0.36) possibly_damaging(0.774) TCGA-49-AAQV-01 7 99270254 99270254 C T CYP3A5 Silent p.V89V 0.06 TCGA-49-AAQV-01 8 124988195 124988195 G A FER1L6 Silent p.V247V 0.04 TCGA-49-AAQV-01 8 139606259 139606259 C A COL22A1 Splice_Site p.X1539_splice 0.20 TCGA-49-AAQV-01 8 17612682 17612682 T C MTUS1 Missense_Mutation p.H212R 0.15 deleterious(0.05) benign(0.23) TCGA-49-AAQV-01 9 38396838 38396838 G C ALDH1B1 Missense_Mutation p.E365Q 0.07 tolerated(0.1) probably_damaging(0.994) TCGA-49-AAQV-01 X 105178293 105178293 G A NRK Missense_Mutation p.G1120D 0.18 tolerated(0.55) benign(0.006) TCGA-49-AAQV-01 X 108641813 108641813 C T GUCY2F Missense_Mutation p.G747D 0.08 tolerated(0.05) possibly_damaging(0.691) TCGA-49-AAQV-01 X 110406194 110406194 G A PAK3 Missense_Mutation p.E210K 0.04 tolerated(0.27) benign(0.113) TCGA-49-AAQV-01 X 115593125 115593125 C T CT83 Missense_Mutation p.R42K 0.08 tolerated(0.16) benign(0.007) TCGA-49-AAQV-01 X 128927626 128927626 G A SASH3 Missense_Mutation p.E321K 0.12 deleterious(0.03) benign(0.097) TCGA-49-AAQV-01 X 151128359 151128359 C G GABRE Missense_Mutation p.D246H 0.20 deleterious(0) possibly_damaging(0.756) TCGA-49-AAQV-01 X 152159734 152159734 C T PNMA5 Missense_Mutation p.E137K 0.04 tolerated(0.75) benign(0.051) TCGA-49-AAQV-01 X 155003617 155003617 G A SPRY3 Silent p.V28V 0.35 TCGA-49-AAQV-01 X 69283024 69283024 G A OTUD6A Missense_Mutation p.G217E 0.15 deleterious(0) probably_damaging(0.999) TCGA-49-AAR0-01 10 58118675 58118675 C T ZWINT Missense_Mutation p.A172T 0.06 deleterious(0.03) benign(0.007) TCGA-49-AAR0-01 10 69961644 69961644 C T MYPN Silent p.P1184P 0.31 TCGA-49-AAR0-01 11 103908007 103908007 A T DDI1 Missense_Mutation p.N153Y 0.07 deleterious(0) possibly_damaging(0.754) TCGA-49-AAR0-01 11 118498578 118498578 A G PHLDB1 Missense_Mutation p.T347A 0.14 tolerated(0.4) benign(0.013) TCGA-49-AAR0-01 11 122733159 122733159 T A CRTAM Intron 0.12 TCGA-49-AAR0-01 11 130750569 130750569 C G SNX19 Missense_Mutation p.Q902H 0.14 deleterious(0) probably_damaging(0.997) TCGA-49-AAR0-01 11 13380098 13380098 T A ARNTL Silent p.T113T 0.06 TCGA-49-AAR0-01 11 18314493 18314493 T A HPS5 Silent p.P605P 0.19 TCGA-49-AAR0-01 11 55563802 55563802 C A OR5D14 Silent p.I257I 0.06 TCGA-49-AAR0-01 11 55587709 55587709 T G OR5D18 Missense_Mutation p.F202V 0.12 tolerated(0.51) benign(0.002) TCGA-49-AAR0-01 11 56143133 56143133 T G OR8U1 Missense_Mutation p.F12V 0.14 deleterious(0) possibly_damaging(0.698) TCGA-49-AAR0-01 11 57076237 57076237 G T TNKS1BP1 Silent p.G1316G 0.04 TCGA-49-AAR0-01 11 58126385 58126385 A G OR5B17 Missense_Mutation p.L53P 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-49-AAR0-01 11 6023355 6023355 G T OR56A4 Missense_Mutation p.L342M 0.23 tolerated(0.06) possibly_damaging(0.668) TCGA-49-AAR0-01 11 64877954 64877954 G C VPS51 Missense_Mutation p.V627L 0.04 tolerated(0.08) possibly_damaging(0.89) TCGA-49-AAR0-01 11 74546883 74546883 G A RNF169 Missense_Mutation p.R412H 0.08 deleterious(0) probably_damaging(0.912) TCGA-49-AAR0-01 11 78204132 78204132 C G NARS2 Missense_Mutation p.D267H 0.24 deleterious(0.01) possibly_damaging(0.722) TCGA-49-AAR0-01 12 101493475 101493475 T C ANO4 Missense_Mutation p.L674P 0.06 deleterious(0) probably_damaging(1) TCGA-49-AAR0-01 12 101493492 101493492 G C ANO4 Missense_Mutation p.E680Q 0.07 deleterious(0) possibly_damaging(0.786) TCGA-49-AAR0-01 12 113334454 113334454 G T RPH3A Splice_Site p.X652_splice 0.11 TCGA-49-AAR0-01 12 4652997 4652997 G C RAD51AP1 Missense_Mutation p.D46H 0.22 deleterious(0) probably_damaging(0.952) TCGA-49-AAR0-01 12 56553376 56553376 A T MYL6 Nonsense_Mutation p.K13* 0.14 TCGA-49-AAR0-01 12 56863182 56863182 G A SPRYD4 Missense_Mutation p.E149K 0.07 tolerated(0.1) possibly_damaging(0.542) TCGA-49-AAR0-01 12 57106262 57106262 A C NACA 3'UTR 0.06 TCGA-49-AAR0-01 12 68051374 68051374 G A DYRK2 Silent p.G229G 0.13 TCGA-49-AAR0-01 12 69140275 69140275 G C SLC35E3 Missense_Mutation p.G40R 0.07 deleterious(0.04) benign(0.072) TCGA-49-AAR0-01 12 7981319 7981319 T C SLC2A14 Silent p.K242K 0.07 TCGA-49-AAR0-01 12 94972268 94972268 C T TMCC3 Missense_Mutation p.D345N 0.10 deleterious(0) possibly_damaging(0.565) TCGA-49-AAR0-01 13 25009176 25009176 G C PARP4 Missense_Mutation p.P1368R 0.07 tolerated_low_confidence(0.41) benign(0.002) TCGA-49-AAR0-01 13 36445379 36445379 G T DCLK1 Missense_Mutation p.P308T 0.27 deleterious(0.04) possibly_damaging(0.803) TCGA-49-AAR0-01 13 47409005 47409005 G T HTR2A Missense_Mutation p.S461R 0.06 tolerated(0.06) benign(0.011) TCGA-49-AAR0-01 13 98896826 98896826 C G FARP1 Intron 0.32 TCGA-49-AAR0-01 14 19378056 19378056 C T OR11H12 Missense_Mutation p.L155F 0.05 tolerated(0.34) benign(0.114) TCGA-49-AAR0-01 14 20528220 20528220 G A OR4L1 Missense_Mutation p.G6E 0.06 tolerated(0.44) benign(0.002) TCGA-49-AAR0-01 14 24619291 24619291 A T RNF31 Silent p.P277P 0.17 TCGA-49-AAR0-01 14 31852785 31852785 G C HEATR5A Missense_Mutation p.A220G 0.09 deleterious(0) probably_damaging(0.997) TCGA-49-AAR0-01 14 62551021 62551021 G A SYT16 Silent p.S514S 0.08 TCGA-49-AAR0-01 14 68353826 68353826 G C RAD51B Missense_Mutation p.D221H 0.12 deleterious(0) possibly_damaging(0.824) TCGA-49-AAR0-01 14 70517769 70517769 T G SLC8A3 Missense_Mutation p.H696P 0.11 deleterious(0.04) benign(0.044) TCGA-49-AAR0-01 14 88946627 88946627 A G PTPN21 Missense_Mutation p.I383T 0.13 tolerated(0.49) benign(0.028) TCGA-49-AAR0-01 14 90651042 90651042 C A KCNK13 Silent p.R308R 0.12 TCGA-49-AAR0-01 14 94914731 94914731 G T SERPINA11 Silent p.A127A 0.18 TCGA-49-AAR0-01 14 95080725 95080725 G T SERPINA3 5'UTR 0.50 TCGA-49-AAR0-01 14 95107244 95107244 C G SERPINA13P RNA 0.30 TCGA-49-AAR0-01 15 27126107 27126107 G T GABRA5 Silent p.G67G 0.14 TCGA-49-AAR0-01 15 40675103 40675103 G T KNSTRN Missense_Mutation p.D23Y 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.491) TCGA-49-AAR0-01 15 72190146 72190146 T A MYO9A Silent p.S1566S 0.11 TCGA-49-AAR0-01 16 17235019 17235019 A T XYLT1 Silent p.L526L 0.14 TCGA-49-AAR0-01 16 2881797 2881797 T A ZG16B Missense_Mutation p.S88R 0.16 tolerated(0.13) probably_damaging(0.981) TCGA-49-AAR0-01 16 4802726 4802726 C T ZNF500 Missense_Mutation p.R365H 0.13 tolerated(0.06) probably_damaging(0.963) TCGA-49-AAR0-01 16 55736301 55736301 G T SLC6A2 Intron 0.21 TCGA-49-AAR0-01 16 57012085 57012085 T - CETP Frame_Shift_Del p.V355Afs*7 0.17 TCGA-49-AAR0-01 16 67401279 67401279 G C LRRC36 Missense_Mutation p.A372P 0.17 deleterious_low_confidence(0.01) benign(0.423) TCGA-49-AAR0-01 16 68056128 68056128 T G DDX28 Missense_Mutation p.L326F 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-49-AAR0-01 16 723035 723035 G C RHOT2 Missense_Mutation p.K545N 0.06 tolerated(0.06) benign(0.004) TCGA-49-AAR0-01 16 72845551 72845551 G C ZFHX3 Missense_Mutation p.N1263K 0.30 possibly_damaging(0.679) TCGA-49-AAR0-01 17 21825403 21825403 A T FAM27L RNA 0.38 TCGA-49-AAR0-01 17 2995697 2995697 C A OR1D2 Silent p.V198V 0.32 TCGA-49-AAR0-01 17 57676836 57676836 C G DHX40 Missense_Mutation p.L600V 0.13 tolerated(0.5) possibly_damaging(0.511) TCGA-49-AAR0-01 17 7574012 7574012 C A TP53 Nonsense_Mutation p.E339* 0.29 TCGA-49-AAR0-01 17 78079554 78079554 G A GAA Missense_Mutation p.D185N 0.09 deleterious(0.03) probably_damaging(0.984) TCGA-49-AAR0-01 17 80320348 80320348 G T TEX19 Nonsense_Mutation p.E108* 0.09 TCGA-49-AAR0-01 17 9515642 9515642 G T WDR16 Missense_Mutation p.G291C 0.35 deleterious(0.02) possibly_damaging(0.491) TCGA-49-AAR0-01 18 61308112 61308112 C T SERPINB4 Silent p.T155T 0.13 TCGA-49-AAR0-01 19 10600324 10600324 C A KEAP1 Missense_Mutation p.G511C 0.46 deleterious(0) probably_damaging(1) TCGA-49-AAR0-01 19 11762505 11762505 G A ZNF833P RNA 0.29 TCGA-49-AAR0-01 19 1220400 1220400 G T STK11 Nonsense_Mutation p.E165* 0.31 TCGA-49-AAR0-01 19 38980911 38980911 G A RYR1 Missense_Mutation p.E2004K 0.29 benign(0.094) TCGA-49-AAR0-01 19 45916775 45916775 C T ERCC1 3'UTR 0.17 TCGA-49-AAR0-01 19 52272763 52272763 T A FPR2 Silent p.V284V 0.21 TCGA-49-AAR0-01 19 52719783 52719783 A T PPP2R1A Missense_Mutation p.E332V 0.30 deleterious(0.03) benign(0.014) TCGA-49-AAR0-01 19 6466915 6466915 T C CRB3 Intron 0.53 TCGA-49-AAR0-01 1 103345342 103345342 G T COL11A1 Nonsense_Mutation p.S1724* 0.21 TCGA-49-AAR0-01 1 11264686 11264686 C G MTOR Silent p.L1292L 0.10 TCGA-49-AAR0-01 1 145281544 145281544 C T NOTCH2NL Silent p.T158T 0.04 TCGA-49-AAR0-01 1 151156801 151156801 C A VPS72 Missense_Mutation p.R185L 0.21 tolerated(0.06) probably_damaging(0.91) TCGA-49-AAR0-01 1 151553466 151553466 A T TUFT1 Missense_Mutation p.S353C 0.20 deleterious(0) probably_damaging(0.94) TCGA-49-AAR0-01 1 152595561 152595561 G T LCE3A Missense_Mutation p.Q7K 0.23 deleterious_low_confidence(0) unknown(0) TCGA-49-AAR0-01 1 156628359 156628359 T A BCAN Missense_Mutation p.L821Q 0.24 deleterious(0) probably_damaging(0.984) TCGA-49-AAR0-01 1 158368475 158368475 C A OR10T2 Missense_Mutation p.R261L 0.18 deleterious(0) possibly_damaging(0.767) TCGA-49-AAR0-01 1 167863137 167863137 A T ADCY10 Missense_Mutation p.L261Q 0.10 deleterious(0) probably_damaging(0.98) TCGA-49-AAR0-01 1 174987660 174987660 C G MRPS14 Missense_Mutation p.R33T 0.13 deleterious(0.03) possibly_damaging(0.57) TCGA-49-AAR0-01 1 21934750 21934750 T A RAP1GAP Missense_Mutation p.M482L 0.21 tolerated(1) benign(0.001) TCGA-49-AAR0-01 1 21934841 21934841 C A RAP1GAP Missense_Mutation p.E451D 0.19 tolerated(0.5) benign(0.409) TCGA-49-AAR0-01 1 222716914 222716914 C A HHIPL2 Silent p.R313R 0.07 TCGA-49-AAR0-01 1 22850863 22850863 G C ZBTB40 Missense_Mutation p.D1151H 0.12 deleterious(0.04) benign(0.091) TCGA-49-AAR0-01 1 231362542 231362542 C A C1orf131 Missense_Mutation p.K212N 0.06 deleterious(0) probably_damaging(0.978) TCGA-49-AAR0-01 1 23689411 23689411 C T ZNF436 Missense_Mutation p.R155Q 0.10 tolerated(0.6) probably_damaging(0.927) TCGA-49-AAR0-01 1 35223205 35223205 G T GJB5 Missense_Mutation p.V92F 0.15 deleterious(0.01) possibly_damaging(0.905) TCGA-49-AAR0-01 1 45810973 45810973 G A TESK2 Missense_Mutation p.P419S 0.30 deleterious(0.04) probably_damaging(1) TCGA-49-AAR0-01 1 70899540 70899540 G T CTH Missense_Mutation p.V303L 0.22 deleterious(0.03) benign(0.001) TCGA-49-AAR0-01 1 75037538 75037538 T C C1orf173 Missense_Mutation p.R1286G 0.09 tolerated(0.34) benign(0.001) TCGA-49-AAR0-01 1 79412017 79412017 G C ELTD1 Silent p.G89G 0.15 TCGA-49-AAR0-01 1 84700910 84700910 C G PRKACB Missense_Mutation p.S373R 0.10 deleterious(0.04) benign(0.076) TCGA-49-AAR0-01 1 89726496 89726496 T A GBP5 Missense_Mutation p.Q551L 0.16 deleterious(0.01) possibly_damaging(0.644) TCGA-49-AAR0-01 20 23016926 23016926 T G SSTR4 Missense_Mutation p.V269G 0.06 deleterious(0) possibly_damaging(0.891) TCGA-49-AAR0-01 20 31671451 31671451 C T BPIFB4 Nonsense_Mutation p.R150* 0.09 TCGA-49-AAR0-01 21 10916377 10916377 C A TPTE Silent p.S423S 0.05 TCGA-49-AAR0-01 21 22804469 22804469 T A NCAM2 Missense_Mutation p.S508T 0.11 deleterious(0.04) benign(0.144) TCGA-49-AAR0-01 22 31529601 31529601 A T INPP5J Silent p.T437T 0.20 TCGA-49-AAR0-01 22 42209387 42209387 A G CCDC134 Missense_Mutation p.I144V 0.05 tolerated(0.41) benign(0.016) TCGA-49-AAR0-01 22 45818172 45818172 G A RIBC2 Missense_Mutation p.A182T 0.07 tolerated(0.43) benign(0.009) TCGA-49-AAR0-01 22 47068794 47068794 C T GRAMD4 Missense_Mutation p.P380L 0.15 deleterious(0) probably_damaging(0.994) TCGA-49-AAR0-01 22 47287249 47287249 G T TBC1D22A Missense_Mutation p.D266Y 0.14 tolerated(0.06) possibly_damaging(0.852) TCGA-49-AAR0-01 2 114002070 114002070 C A PAX8 Missense_Mutation p.R108L 0.06 deleterious(0) probably_damaging(0.998) TCGA-49-AAR0-01 2 155098585 155098585 T A GALNT13 Missense_Mutation p.S118R 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-49-AAR0-01 2 168115669 168115669 G C XIRP2 3'UTR 0.10 TCGA-49-AAR0-01 2 170666889 170666889 C T SSB Missense_Mutation p.H256Y 0.08 tolerated(0.16) benign(0.211) TCGA-49-AAR0-01 2 189876490 189876490 G T COL3A1 Missense_Mutation p.C1464F 0.10 unknown(0) TCGA-49-AAR0-01 2 203421050 203421050 G T BMPR2 Missense_Mutation p.V888L 0.36 tolerated_low_confidence(0.44) benign(0.007) TCGA-49-AAR0-01 2 206562360 206562360 G T NRP2 Nonsense_Mutation p.E56* 0.09 TCGA-49-AAR0-01 2 206617651 206617651 C A NRP2 Silent p.R666R 0.04 TCGA-49-AAR0-01 2 218940156 218940156 C A RUFY4 Missense_Mutation p.A334D 0.21 tolerated(0.25) benign(0.017) TCGA-49-AAR0-01 2 228884171 228884171 T A SPHKAP Missense_Mutation p.I467F 0.15 tolerated(0.1) benign(0.359) TCGA-49-AAR0-01 2 230725141 230725141 T C TRIP12 Intron 0.14 TCGA-49-AAR0-01 2 239040346 239040346 A T ESPNL Missense_Mutation p.E997D 0.11 deleterious(0) probably_damaging(0.999) TCGA-49-AAR0-01 2 24245738 24245738 G C MFSD2B Missense_Mutation p.R342P 0.19 deleterious(0) benign(0.328) TCGA-49-AAR0-01 2 32379538 32379538 C G SPAST Missense_Mutation p.N608K 0.29 deleterious(0) probably_damaging(1) TCGA-49-AAR0-01 2 79349123 79349123 C A REG1A Missense_Mutation p.Q65K 0.36 deleterious(0.01) possibly_damaging(0.462) TCGA-49-AAR0-01 2 88828796 88828796 T C TEX37 Missense_Mutation p.L116P 0.06 deleterious_low_confidence(0) possibly_damaging(0.5) TCGA-49-AAR0-01 2 90259800 90259800 C A IGKV1D-8 Silent p.L9L 0.08 TCGA-49-AAR0-01 3 126201318 126201318 C A UROC1 Missense_Mutation p.R694L 0.19 deleterious(0) probably_damaging(0.982) TCGA-49-AAR0-01 3 128356646 128356646 C T RPN1 Missense_Mutation p.S210N 0.08 deleterious(0.01) probably_damaging(0.969) TCGA-49-AAR0-01 3 138248226 138248226 G T CEP70 Silent p.G257G 0.05 TCGA-49-AAR0-01 3 175473135 175473135 G T NAALADL2 Silent p.R706R 0.15 TCGA-49-AAR0-01 3 180334325 180334325 G T CCDC39 Silent p.I855I 0.11 TCGA-49-AAR0-01 3 184105199 184105199 G A CHRD Silent p.A795A 0.26 TCGA-49-AAR0-01 3 185161301 185161301 A C MAP3K13 Missense_Mutation p.E243A 0.18 deleterious(0) probably_damaging(0.991) TCGA-49-AAR0-01 4 114275100 114275100 C T ANK2 Nonsense_Mutation p.R1776* 0.09 TCGA-49-AAR0-01 4 122853749 122853749 C A TRPC3 Missense_Mutation p.A222S 0.28 tolerated(0.39) benign(0.014) TCGA-49-AAR0-01 4 177138009 177138009 C A ASB5 Silent p.T274T 0.06 TCGA-49-AAR0-01 4 71063020 71063020 T G ODAM Silent p.L41L 0.05 TCGA-49-AAR0-01 4 91230358 91230358 C A CCSER1 Missense_Mutation p.T308K 0.22 tolerated_low_confidence(0.92) benign(0) TCGA-49-AAR0-01 5 110427982 110427982 A C WDR36 5'UTR 0.10 TCGA-49-AAR0-01 5 137486678 137486678 G A BRD8 Missense_Mutation p.P959L 0.10 deleterious_low_confidence(0) possibly_damaging(0.755) TCGA-49-AAR0-01 5 140530555 140530555 C A PCDHB6 Silent p.P239P 0.24 TCGA-49-AAR0-01 5 140574495 140574495 C T PCDHB10 Silent p.T790T 0.09 TCGA-49-AAR0-01 5 140590649 140590649 C T PCDHB12 Missense_Mutation p.R724C 0.05 tolerated_low_confidence(0.09) benign(0.005) TCGA-49-AAR0-01 5 176304920 176304920 C T UNC5A Missense_Mutation p.A554V 0.18 tolerated(0.06) benign(0.002) TCGA-49-AAR0-01 5 177665664 177665664 C A COL23A1 3'UTR 0.11 TCGA-49-AAR0-01 5 23527344 23527344 G A PRDM9 Missense_Mutation p.G716E 0.11 deleterious(0.04) probably_damaging(1) TCGA-49-AAR0-01 5 23527345 23527345 G T PRDM9 Silent p.G716G 0.11 TCGA-49-AAR0-01 5 35991273 35991273 T C UGT3A1 Missense_Mutation p.K24E 0.29 deleterious(0.02) benign(0.344) TCGA-49-AAR0-01 5 7709395 7709395 G T ADCY2 Silent p.S491S 0.24 TCGA-49-AAR0-01 5 93859772 93859772 C T KIAA0825 Missense_Mutation p.E55K 0.09 tolerated(0.28) benign(0.115) TCGA-49-AAR0-01 6 102483318 102483318 A T GRIK2 Missense_Mutation p.T730S 0.06 tolerated(0.37) benign(0.021) TCGA-49-AAR0-01 6 149730766 149730766 G C TAB2 Missense_Mutation p.G665R 0.17 deleterious(0.01) probably_damaging(1) TCGA-49-AAR0-01 6 151939231 151939231 G A CCDC170 Silent p.V699V 0.13 TCGA-49-AAR0-01 6 169632291 169632291 C A THBS2 Silent p.V645V 0.09 TCGA-49-AAR0-01 6 30574583 30574583 G C PPP1R10 Missense_Mutation p.R145G 0.10 deleterious(0) possibly_damaging(0.894) TCGA-49-AAR0-01 6 32190320 32190320 C T NOTCH4 Missense_Mutation p.R140H 0.29 tolerated(0.55) benign(0.003) TCGA-49-AAR0-01 6 32629850 32629850 C A HLA-DQB1 Missense_Mutation p.W185C 0.06 deleterious(0) probably_damaging(0.999) TCGA-49-AAR0-01 6 41162360 41162360 G T TREML2 Missense_Mutation p.S196R 0.15 tolerated(0.27) possibly_damaging(0.736) TCGA-49-AAR0-01 6 71245977 71245977 C T FAM135A Missense_Mutation p.S1327L 0.19 deleterious(0) probably_damaging(0.993) TCGA-49-AAR0-01 6 88313119 88313119 A T ORC3 Missense_Mutation p.L65F 0.06 deleterious(0) probably_damaging(0.993) TCGA-49-AAR0-01 6 89907861 89907861 G A GABRR1 Silent p.V150V 0.06 TCGA-49-AAR0-01 7 101200809 101200809 G A COL26A1 Silent p.%3D 0.43 TCGA-49-AAR0-01 7 120381678 120381678 C A KCND2 Missense_Mutation p.L457M 0.26 tolerated_low_confidence(0.27) benign(0.213) TCGA-49-AAR0-01 7 142028187 142028187 G T TRBV6-1 Missense_Mutation p.G4W 0.27 tolerated(0.07) possibly_damaging(0.819) TCGA-49-AAR0-01 7 143085652 143085652 C T ZYX Silent p.F405F 0.13 TCGA-49-AAR0-01 7 154564615 154564615 G A DPP6 Missense_Mutation p.D367N 0.09 deleterious(0.03) benign(0.098) TCGA-49-AAR0-01 7 4950845 4950845 G T MMD2 Missense_Mutation p.S133Y 0.33 tolerated(0.47) benign(0.099) TCGA-49-AAR0-01 7 99507254 99507254 G A TRIM4 Silent p.L167L 0.28 TCGA-49-AAR0-01 8 133584690 133584690 T G LRRC6 Missense_Mutation p.K422T 0.05 tolerated(0.08) benign(0.015) TCGA-49-AAR0-01 8 145094914 145094914 C A SPATC1 Missense_Mutation p.P106T 0.33 tolerated(0.35) possibly_damaging(0.755) TCGA-49-AAR0-01 8 17872272 17872272 A T PCM1 Nonsense_Mutation p.K1922* 0.17 TCGA-49-AAR0-01 8 2017572 2017572 G T MYOM2 Missense_Mutation p.R250L 0.29 tolerated(0.08) benign(0.025) TCGA-49-AAR0-01 8 71510151 71510152 CC A TRAM1 Frame_Shift_Del p.W135Lfs*26 0.23 TCGA-49-AAR0-01 8 72128975 72128975 A G EYA1 Missense_Mutation p.Y438H 0.07 deleterious(0.03) benign(0.049) TCGA-49-AAR0-01 8 88249191 88249191 C T CNBD1 Nonsense_Mutation p.R208* 0.08 TCGA-49-AAR0-01 9 104433237 104433237 C T GRIN3A Missense_Mutation p.G486E 0.09 tolerated(0.68) benign(0) TCGA-49-AAR0-01 9 108484904 108484904 T C TMEM38B Splice_Site p.X181_splice 0.24 TCGA-49-AAR0-01 9 113173494 113173494 G A SVEP1 Missense_Mutation p.A2166V 0.08 probably_damaging(0.986) TCGA-49-AAR0-01 X 109924854 109924854 C T CHRDL1 Missense_Mutation p.D338N 0.22 tolerated(0.42) possibly_damaging(0.836) TCGA-49-AAR0-01 X 153132282 153132282 G A L1CAM Silent p.R751R 0.14 TCGA-49-AAR0-01 X 17818426 17818426 C T RAI2 3'UTR 0.57 TCGA-49-AAR0-01 X 24024558 24024558 C A KLHL15 Missense_Mutation p.V85F 0.44 deleterious(0) benign(0.361) TCGA-49-AAR0-01 X 36083772 36083772 A T CHDC2 5'UTR 0.47 TCGA-49-AAR2-01 10 105166456 105166456 C G PDCD11 Nonsense_Mutation p.S260* 0.39 TCGA-49-AAR2-01 10 127737954 127737954 G A ADAM12 Silent p.A598A 0.32 TCGA-49-AAR2-01 10 16918973 16918973 G A CUBN Missense_Mutation p.A3010V 0.11 tolerated(0.62) benign(0.003) TCGA-49-AAR2-01 10 21124485 21124485 A C NEBL Missense_Mutation p.L469R 0.45 deleterious(0.04) possibly_damaging(0.908) TCGA-49-AAR2-01 10 25464462 25464462 G T GPR158 Missense_Mutation p.R38M 0.18 deleterious(0.02) benign(0.417) TCGA-49-AAR2-01 10 29599075 29599075 G T LYZL1 Missense_Mutation p.C158F 0.16 deleterious(0) probably_damaging(0.999) TCGA-49-AAR2-01 10 30629302 30629302 C A MTPAP Silent p.T136T 0.47 TCGA-49-AAR2-01 10 43089582 43089582 G A ZNF33B Silent p.D272D 0.25 TCGA-49-AAR2-01 10 60998442 60998442 C A PHYHIPL Missense_Mutation p.H191Q 0.33 tolerated(0.13) benign(0.016) TCGA-49-AAR2-01 10 62544595 62544595 A T CDK1 Missense_Mutation p.E57V 0.27 deleterious(0) probably_damaging(0.985) TCGA-49-AAR2-01 10 67829198 67829198 T G CTNNA3 Missense_Mutation p.Q676P 0.33 deleterious(0) unknown(0) TCGA-49-AAR2-01 10 84744944 84744944 G T NRG3 Missense_Mutation p.L558F 0.31 tolerated(0.07) possibly_damaging(0.668) TCGA-49-AAR2-01 10 90497460 90497461 - A LIPK Frame_Shift_Ins p.N247Kfs*20 0.22 TCGA-49-AAR2-01 10 93609352 93609352 G T TNKS2 Splice_Site p.X898_splice 0.19 TCGA-49-AAR2-01 11 1097358 1097358 C T MUC2 Silent p.G2258G 0.21 TCGA-49-AAR2-01 11 110494984 110494984 C T ARHGAP20 Nonsense_Mutation p.W135* 0.25 TCGA-49-AAR2-01 11 113283411 113283411 G T DRD2 Silent p.P335P 0.42 TCGA-49-AAR2-01 11 117395650 117395650 G C DSCAML1 Missense_Mutation p.D329E 0.27 tolerated(0.1) possibly_damaging(0.547) TCGA-49-AAR2-01 11 1260726 1260726 C T MUC5B Silent p.C1171C 0.25 TCGA-49-AAR2-01 11 129758616 129758616 G A NFRKB Silent p.L83L 0.30 TCGA-49-AAR2-01 11 132527188 132527188 C A OPCML Missense_Mutation p.R65L 0.31 deleterious(0) probably_damaging(0.985) TCGA-49-AAR2-01 11 14865528 14865528 C A PDE3B Missense_Mutation p.P826T 0.22 deleterious(0) probably_damaging(1) TCGA-49-AAR2-01 11 15994270 15994270 C A SOX6 3'UTR 0.33 TCGA-49-AAR2-01 11 18737042 18737042 C T IGSF22 Missense_Mutation p.V490M 0.19 deleterious(0.02) probably_damaging(0.992) TCGA-49-AAR2-01 11 18743193 18743193 C T IGSF22 Silent p.R89R 0.27 TCGA-49-AAR2-01 11 205407 205407 C A BET1L Missense_Mutation p.M77I 0.41 tolerated(0.06) benign(0.057) TCGA-49-AAR2-01 11 22391640 22391640 T C SLC17A6 Missense_Mutation p.I316T 0.34 deleterious(0) possibly_damaging(0.792) TCGA-49-AAR2-01 11 32781656 32781656 C A CCDC73 Missense_Mutation p.R45M 0.25 deleterious(0) probably_damaging(1) TCGA-49-AAR2-01 11 33631441 33631441 C T KIAA1549L Silent p.A1439A 0.17 TCGA-49-AAR2-01 11 33677562 33677562 A T KIAA1549L Missense_Mutation p.Y1625F 0.30 tolerated(0.25) benign(0.026) TCGA-49-AAR2-01 11 36484151 36484151 C A PRR5L Silent p.L324L 0.50 TCGA-49-AAR2-01 11 3697789 3697789 C T NUP98 Missense_Mutation p.R1712Q 0.21 deleterious(0.01) possibly_damaging(0.807) TCGA-49-AAR2-01 11 40137065 40137065 G T LRRC4C Silent p.R260R 0.33 TCGA-49-AAR2-01 11 46407278 46407278 G - CHRM4 Frame_Shift_Del p.P277Rfs*69 0.53 TCGA-49-AAR2-01 11 46407430 46407430 G T CHRM4 Silent p.V226V 0.62 TCGA-49-AAR2-01 11 4703916 4703916 G T OR51E2 Missense_Mutation p.A9D 0.46 deleterious(0.01) benign(0.033) TCGA-49-AAR2-01 11 4928980 4928980 C A OR51A7 Missense_Mutation p.H127Q 0.33 tolerated(0.29) benign(0.278) TCGA-49-AAR2-01 11 5372739 5372739 T C OR51B6 Translation_Start_Site p.M1? 0.27 deleterious_low_confidence(0) possibly_damaging(0.778) TCGA-49-AAR2-01 11 55541434 55541434 C A OR5D13 Missense_Mutation p.T174N 0.28 tolerated(1) benign(0.002) TCGA-49-AAR2-01 11 55587849 55587849 C T OR5D18 Silent p.A248A 0.31 TCGA-49-AAR2-01 11 55761481 55761481 A T OR5F1 Silent p.I207I 0.38 TCGA-49-AAR2-01 11 55861266 55861266 G T OR8I2 Missense_Mutation p.W161C 0.33 tolerated(0.53) benign(0) TCGA-49-AAR2-01 11 56143159 56143159 T C OR8U1 Silent p.H20H 0.25 TCGA-49-AAR2-01 11 5632497 5632497 T A TRIM6 Missense_Mutation p.F492L 0.28 deleterious(0.01) probably_damaging(0.98) TCGA-49-AAR2-01 11 57367694 57367694 G T SERPING1 Missense_Mutation p.D132Y 0.37 deleterious(0) possibly_damaging(0.862) TCGA-49-AAR2-01 11 58190133 58190133 G T OR5B2 Nonsense_Mutation p.S201* 0.37 TCGA-49-AAR2-01 11 61977902 61977902 C A SCGB2A1 Missense_Mutation p.L25M 0.35 tolerated(0.11) possibly_damaging(0.887) TCGA-49-AAR2-01 11 61977922 61977922 G C SCGB2A1 Missense_Mutation p.K31N 0.34 tolerated(0.16) possibly_damaging(0.728) TCGA-49-AAR2-01 11 63176219 63176219 T A SLC22A9 Missense_Mutation p.L490Q 0.36 deleterious(0) probably_damaging(0.971) TCGA-49-AAR2-01 11 65123701 65123701 T C TIGD3 Missense_Mutation p.L141P 0.50 tolerated(0.22) benign(0.002) TCGA-49-AAR2-01 11 67288512 67288512 C T CABP2 Silent p.E121E 0.38 TCGA-49-AAR2-01 11 6867810 6867810 G T OR10A5 Missense_Mutation p.K299N 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-49-AAR2-01 11 68704044 68704044 G A IGHMBP2 Missense_Mutation p.G699E 0.43 tolerated(0.41) benign(0.003) TCGA-49-AAR2-01 11 6912868 6912868 A G OR2D2 Silent p.Y288Y 0.36 TCGA-49-AAR2-01 11 7083590 7083590 C A NLRP14 Missense_Mutation p.A944E 0.40 tolerated(0.71) benign(0.027) TCGA-49-AAR2-01 11 89883752 89883752 G T NAALAD2 Nonsense_Mutation p.G196* 0.29 TCGA-49-AAR2-01 11 9192308 9192308 C G DENND5A Silent p.L641L 0.29 TCGA-49-AAR2-01 11 92600285 92600285 G T FAT3 Nonsense_Mutation p.E4013* 0.50 TCGA-49-AAR2-01 12 100691924 100691924 G T SCYL2 Missense_Mutation p.D151Y 0.21 deleterious(0) probably_damaging(0.98) TCGA-49-AAR2-01 12 100774476 100774476 T G SLC17A8 Intron 0.34 TCGA-49-AAR2-01 12 104084296 104084296 C A STAB2 Missense_Mutation p.H1093N 0.46 tolerated(0.27) benign(0.258) TCGA-49-AAR2-01 12 105303514 105303514 T A SLC41A2 Silent p.T194T 0.29 TCGA-49-AAR2-01 12 105443798 105443798 G T ALDH1L2 Missense_Mutation p.A525E 0.19 deleterious(0) probably_damaging(0.983) TCGA-49-AAR2-01 12 10600145 10600145 C A KLRC1 Missense_Mutation p.L192F 0.28 deleterious(0.02) possibly_damaging(0.808) TCGA-49-AAR2-01 12 108912707 108912707 C T FICD Silent p.L278L 0.38 TCGA-49-AAR2-01 12 111319064 111319064 C - CCDC63 Frame_Shift_Del p.R273Afs*39 0.37 TCGA-49-AAR2-01 12 124848321 124848321 G T NCOR2 Silent p.L944L 0.25 TCGA-49-AAR2-01 12 20766473 20766473 G T PDE3A Missense_Mutation p.V370L 0.26 deleterious(0) possibly_damaging(0.612) TCGA-49-AAR2-01 12 2702418 2702418 C T CACNA1C Missense_Mutation p.P857L 0.22 deleterious(0.02) benign(0.399) TCGA-49-AAR2-01 12 27554473 27554473 G T ARNTL2 Missense_Mutation p.E428D 0.24 deleterious(0.05) probably_damaging(0.996) TCGA-49-AAR2-01 12 3702392 3702392 A T PRMT8 3'UTR 0.11 TCGA-49-AAR2-01 12 43846089 43846089 T A ADAMTS20 Missense_Mutation p.Q689H 0.35 deleterious(0) probably_damaging(0.979) TCGA-49-AAR2-01 12 4479653 4479653 G T FGF23 Silent p.A204A 0.27 TCGA-49-AAR2-01 12 48390360 48390360 C T COL2A1 Missense_Mutation p.A194T 0.31 unknown(0) TCGA-49-AAR2-01 12 49259641 49259641 C G RND1 5'UTR 0.56 TCGA-49-AAR2-01 12 57593723 57593723 G T LRP1 Missense_Mutation p.G3310V 0.31 probably_damaging(0.949) TCGA-49-AAR2-01 12 6471266 6471266 C A SCNN1A Missense_Mutation p.G335C 0.28 deleterious(0.01) probably_damaging(0.917) TCGA-49-AAR2-01 12 69113403 69113403 G TT NUP107 Frame_Shift_Ins p.W407Ffs*12 0.24 TCGA-49-AAR2-01 12 70004424 70004424 A G LRRC10 Silent p.N65N 0.33 TCGA-49-AAR2-01 12 70088154 70088154 C A BEST3 Silent p.V81V 0.26 TCGA-49-AAR2-01 12 71928927 71928927 C A LGR5 Missense_Mutation p.P130H 0.31 deleterious(0) probably_damaging(1) TCGA-49-AAR2-01 12 7457085 7457085 A G ACSM4 Missense_Mutation p.N53S 0.41 deleterious(0) probably_damaging(0.941) TCGA-49-AAR2-01 12 85547500 85547500 T C LRRIQ1 Missense_Mutation p.L1534P 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-49-AAR2-01 13 21006405 21006405 C A CRYL1 Nonsense_Mutation p.E157* 0.20 TCGA-49-AAR2-01 13 32729718 32729718 G C FRY Missense_Mutation p.V524L 0.33 deleterious(0.01) benign(0.234) TCGA-49-AAR2-01 13 37439701 37439701 C G SMAD9 Missense_Mutation p.E326Q 0.34 deleterious(0.01) probably_damaging(1) TCGA-49-AAR2-01 13 39598607 39598607 T A PROSER1 Intron 0.22 TCGA-49-AAR2-01 13 42764543 42764543 G T DGKH Missense_Mutation p.M639I 0.26 tolerated(0.12) benign(0.001) TCGA-49-AAR2-01 13 49281499 49281499 C A CYSLTR2 Silent p.G182G 0.28 TCGA-49-AAR2-01 13 49688790 49688790 G T FNDC3A Splice_Site p.X59_splice 0.29 TCGA-49-AAR2-01 13 60590224 60590224 T G DIAPH3 Missense_Mutation p.K228Q 0.40 deleterious(0.01) possibly_damaging(0.555) TCGA-49-AAR2-01 13 79190278 79190278 C A RNF219 Nonsense_Mutation p.E540* 0.31 TCGA-49-AAR2-01 13 96553116 96553116 C A UGGT2 Missense_Mutation p.C860F 0.25 deleterious(0) probably_damaging(0.999) TCGA-49-AAR2-01 14 102904502 102904502 G T TECPR2 Missense_Mutation p.K846N 0.32 deleterious(0) benign(0.257) TCGA-49-AAR2-01 14 103452845 103452845 C A CDC42BPB Missense_Mutation p.L223F 0.40 deleterious(0) probably_damaging(1) TCGA-49-AAR2-01 14 20502352 20502352 C A OR4K13 Missense_Mutation p.C189F 0.18 deleterious(0) probably_damaging(1) TCGA-49-AAR2-01 14 20502643 20502643 A T OR4K13 Missense_Mutation p.I92N 0.35 deleterious(0) probably_damaging(0.977) TCGA-49-AAR2-01 14 21488955 21488955 C A NDRG2 Silent p.L152L 0.22 TCGA-49-AAR2-01 14 22392724 22392724 C A TRAV14DV4 Missense_Mutation p.R83S 0.30 TCGA-49-AAR2-01 14 26939555 26939555 G A NOVA1 Intron 0.50 TCGA-49-AAR2-01 14 32315747 32315747 G T NUBPL Missense_Mutation p.G255V 0.32 deleterious(0) probably_damaging(1) TCGA-49-AAR2-01 14 34266746 34266746 C G NPAS3 Missense_Mutation p.S462C 0.26 deleterious(0.01) probably_damaging(0.971) TCGA-49-AAR2-01 14 44975604 44975604 G - FSCB Frame_Shift_Del p.P196Lfs*35 0.26 TCGA-49-AAR2-01 14 45473532 45473532 C G FAM179B Silent p.V869V 0.26 TCGA-49-AAR2-01 14 51134718 51134718 T A SAV1 5'UTR 0.31 TCGA-49-AAR2-01 14 53619551 53619551 T C DDHD1 Missense_Mutation p.Y89C 0.29 tolerated_low_confidence(0.08) benign(0.006) TCGA-49-AAR2-01 14 55900359 55900359 C A TBPL2 Silent p.T259T 0.23 TCGA-49-AAR2-01 14 69356961 69356961 C A ACTN1 Missense_Mutation p.G377C 0.29 deleterious(0.01) probably_damaging(0.978) TCGA-49-AAR2-01 14 79181103 79181103 T A NRXN3 Silent p.T182T 0.33 TCGA-49-AAR2-01 14 81736968 81736968 G T STON2 Intron 0.33 TCGA-49-AAR2-01 14 99641022 99641022 C A BCL11B Silent p.A717A 0.38 TCGA-49-AAR2-01 14 99641431 99641431 C - BCL11B Frame_Shift_Del p.G581Afs*24 0.32 TCGA-49-AAR2-01 15 100943023 100943023 C A CERS3 Missense_Mutation p.E349D 0.24 tolerated(0.5) benign(0.003) TCGA-49-AAR2-01 15 102346635 102346635 C A OR4F6 Missense_Mutation p.S238Y 0.35 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-49-AAR2-01 15 25442572 25442572 G - SNORD115-14 3'Flank 0.22 TCGA-49-AAR2-01 15 25449335 25449335 G A SNORD115-20 5'Flank 0.33 TCGA-49-AAR2-01 15 26026311 26026311 C A ATP10A Missense_Mutation p.R170L 0.37 deleterious(0.03) benign(0.142) TCGA-49-AAR2-01 15 26793010 26793010 C A GABRB3 Missense_Mutation p.W451L 0.22 deleterious(0.01) probably_damaging(0.978) TCGA-49-AAR2-01 15 34064287 34064287 G T RYR3 Missense_Mutation p.V2995L 0.54 benign(0.196) TCGA-49-AAR2-01 15 34355379 34355379 C A CHRM5 Missense_Mutation p.A154D 0.36 deleterious(0) probably_damaging(1) TCGA-49-AAR2-01 15 35084463 35084463 A T ACTC1 Silent p.R212R 0.35 TCGA-49-AAR2-01 15 41046946 41046946 G A RMDN3 Silent p.A12A 0.28 TCGA-49-AAR2-01 15 41771366 41771366 G T RTF1 Silent p.V628V 0.35 TCGA-49-AAR2-01 15 44097419 44097419 T G MFAP1 Missense_Mutation p.D398A 0.34 deleterious(0) probably_damaging(0.999) TCGA-49-AAR2-01 15 48433394 48433394 T C SLC24A5 Missense_Mutation p.V388A 0.37 deleterious(0) possibly_damaging(0.897) TCGA-49-AAR2-01 15 48720641 48720641 C T FBN1 Missense_Mutation p.G2300E 0.27 probably_damaging(0.961) TCGA-49-AAR2-01 15 50868032 50868032 A C TRPM7 Intron 0.29 TCGA-49-AAR2-01 15 50868034 50868034 T G TRPM7 Intron 0.31 TCGA-49-AAR2-01 15 51520078 51520078 C G CYP19A1 Missense_Mutation p.G117R 0.33 deleterious(0) probably_damaging(1) TCGA-49-AAR2-01 15 68606151 68606163 GGAAGCGTAAGGG - ITGA11 Frame_Shift_Del p.P946Tfs*16 0.27 TCGA-49-AAR2-01 15 81624955 81624955 T C TMC3 Silent p.P1036P 0.30 TCGA-49-AAR2-01 15 86198935 86198935 C T AKAP13 Silent p.S1554S 0.23 TCGA-49-AAR2-01 16 2647242 2647242 A C PDPK1 Missense_Mutation p.E507A 0.38 deleterious(0) possibly_damaging(0.88) TCGA-49-AAR2-01 16 2647243 2647243 G A PDPK1 Silent p.E507E 0.38 TCGA-49-AAR2-01 16 27460562 27460562 C A IL21R Silent p.V525V 0.38 TCGA-49-AAR2-01 16 28328848 28328848 G T SBK1 Missense_Mutation p.A46S 0.34 tolerated(0.68) benign(0.003) TCGA-49-AAR2-01 16 31478178 31478178 G T ARMC5 Missense_Mutation p.G926W 0.53 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-49-AAR2-01 16 421927 421927 C A TMEM8A 3'UTR 0.35 TCGA-49-AAR2-01 16 58438566 58438566 C A GINS3 Missense_Mutation p.S234Y 0.27 deleterious(0) possibly_damaging(0.737) TCGA-49-AAR2-01 16 67314005 67314005 G T PLEKHG4 Missense_Mutation p.D20Y 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-49-AAR2-01 16 71509188 71509188 G C ZNF19 Missense_Mutation p.A421G 0.33 tolerated(0.07) benign(0.011) TCGA-49-AAR2-01 16 71509189 71509189 C T ZNF19 Missense_Mutation p.A421T 0.33 tolerated(0.31) benign(0.011) TCGA-49-AAR2-01 16 746993 746993 G A FBXL16 Missense_Mutation p.T138M 0.38 tolerated(0.08) benign(0.194) TCGA-49-AAR2-01 16 74708902 74708902 T A MLKL Missense_Mutation p.D446V 0.42 deleterious(0) possibly_damaging(0.596) TCGA-49-AAR2-01 16 77369752 77369752 G T ADAMTS18 Missense_Mutation p.P587H 0.25 deleterious(0.04) probably_damaging(0.95) TCGA-49-AAR2-01 16 77401469 77401469 C A ADAMTS18 Missense_Mutation p.G216V 0.25 tolerated(0.3) benign(0.001) TCGA-49-AAR2-01 16 87678141 87678141 G T JPH3 Silent p.L220L 0.29 TCGA-49-AAR2-01 16 90162224 90162224 G T TUBB8P7 RNA 0.05 TCGA-49-AAR2-01 17 1028637 1028637 C A ABR Missense_Mutation p.G43C 0.29 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-49-AAR2-01 17 11659972 11659972 C G DNAH9 Missense_Mutation p.P2276A 0.41 probably_damaging(0.997) TCGA-49-AAR2-01 17 11700981 11700981 G T DNAH9 Missense_Mutation p.G2764V 0.35 benign(0.175) TCGA-49-AAR2-01 17 18417987 18417987 T C CTD-2303H24.2 RNA 0.33 TCGA-49-AAR2-01 17 28405430 28405430 C A EFCAB5 Silent p.R979R 0.48 TCGA-49-AAR2-01 17 3119646 3119646 C A OR1A1 Silent p.L244L 0.33 TCGA-49-AAR2-01 17 31324002 31324002 G T SPACA3 Missense_Mutation p.C162F 0.32 deleterious(0) probably_damaging(1) TCGA-49-AAR2-01 17 32685099 32685099 C A CCL13 Silent p.V82V 0.50 TCGA-49-AAR2-01 17 33520517 33520517 C A SLC35G3 Silent p.V270V 0.26 TCGA-49-AAR2-01 17 36489174 36489174 G T GPR179 Nonsense_Mutation p.S666* 0.42 TCGA-49-AAR2-01 17 37046701 37046701 G T LASP1 Missense_Mutation p.V65L 0.27 deleterious(0.01) benign(0.179) TCGA-49-AAR2-01 17 38652287 38652287 C A TNS4 Missense_Mutation p.A131S 0.31 tolerated(0.4) benign(0.004) TCGA-49-AAR2-01 17 39553589 39553589 G T KRT31 Missense_Mutation p.A68D 0.21 deleterious(0) probably_damaging(1) TCGA-49-AAR2-01 17 40330139 40330139 C A KCNH4 Missense_Mutation p.Q188H 0.29 deleterious(0.02) benign(0.013) TCGA-49-AAR2-01 17 47390144 47390144 G C ZNF652 Missense_Mutation p.H322D 0.28 deleterious(0) probably_damaging(0.996) TCGA-49-AAR2-01 17 51901430 51901430 G T KIF2B Nonsense_Mutation p.E346* 0.29 TCGA-49-AAR2-01 17 7752400 7752400 G A KDM6B Missense_Mutation p.A932T 0.40 benign(0.015) TCGA-49-AAR2-01 17 7800428 7800428 C A CHD3 Silent p.R638R 0.29 TCGA-49-AAR2-01 18 25585945 25585945 C A CDH2 Missense_Mutation p.A239S 0.20 deleterious(0.03) probably_damaging(0.975) TCGA-49-AAR2-01 18 31324184 31324184 G A ASXL3 Missense_Mutation p.G1458R 0.28 probably_damaging(0.953) TCGA-49-AAR2-01 18 32418740 32418740 C A DTNA Intron 0.50 TCGA-49-AAR2-01 18 34850800 34850800 G T CELF4 Missense_Mutation p.L344I 0.20 tolerated(0.18) benign(0.004) TCGA-49-AAR2-01 18 40695415 40695415 C T RIT2 Missense_Mutation p.V24I 0.21 deleterious(0) probably_damaging(0.98) TCGA-49-AAR2-01 18 40850223 40850223 C T SYT4 3'UTR 0.49 TCGA-49-AAR2-01 18 59483000 59483000 G T RNF152 3'UTR 0.47 TCGA-49-AAR2-01 18 67231772 67231772 C A DOK6 Missense_Mutation p.P39H 0.17 deleterious(0) probably_damaging(0.967) TCGA-49-AAR2-01 18 70417670 70417670 G A NETO1 Missense_Mutation p.P390S 0.66 deleterious(0) probably_damaging(0.998) TCGA-49-AAR2-01 19 10602767 10602767 C A KEAP1 Missense_Mutation p.V271L 0.52 deleterious(0) probably_damaging(0.927) TCGA-49-AAR2-01 19 1578301 1578301 C T MBD3 3'UTR 0.50 TCGA-49-AAR2-01 19 16551716 16551716 C A EPS15L1 Missense_Mutation p.W57L 0.46 deleterious(0) probably_damaging(0.987) TCGA-49-AAR2-01 19 18368829 18368829 G A KIAA1683 Missense_Mutation p.R1089C 0.54 deleterious(0.03) benign(0.002) TCGA-49-AAR2-01 19 20308411 20308411 G A ZNF486 Missense_Mutation p.E298K 0.41 deleterious(0.03) possibly_damaging(0.643) TCGA-49-AAR2-01 19 22785434 22785434 G A AC011467.1 5'Flank 0.55 TCGA-49-AAR2-01 19 35832283 35832283 C A CD22 Silent p.P515P 0.42 TCGA-49-AAR2-01 19 37117871 37117871 G - ZNF382 Frame_Shift_Del p.K359Sfs*186 0.36 TCGA-49-AAR2-01 19 37643555 37643555 C A ZNF585A Nonsense_Mutation p.G361* 0.48 TCGA-49-AAR2-01 19 42584290 42584290 G T ZNF574 Missense_Mutation p.R511L 0.58 deleterious(0.01) probably_damaging(0.913) TCGA-49-AAR2-01 19 44252130 44252130 C A SMG9 Silent p.R75R 0.51 TCGA-49-AAR2-01 19 44271766 44271766 C A KCNN4 Missense_Mutation p.A405S 0.53 tolerated(0.67) benign(0.075) TCGA-49-AAR2-01 19 51326984 51326984 G T KLK1 Nonsense_Mutation p.C7* 0.53 TCGA-49-AAR2-01 19 51379759 51379759 C T KLK2 Silent p.L80L 0.40 TCGA-49-AAR2-01 19 51890574 51890574 G T LIM2 Missense_Mutation p.L42M 0.41 deleterious(0) probably_damaging(1) TCGA-49-AAR2-01 19 51890575 51890575 G T LIM2 Silent p.G41G 0.41 TCGA-49-AAR2-01 19 54744809 54744809 G T LILRA6 Missense_Mutation p.P285T 0.25 tolerated(0.22) possibly_damaging(0.899) TCGA-49-AAR2-01 19 55047061 55047061 C G KIR3DX1 Silent p.S202S 0.27 TCGA-49-AAR2-01 19 55085324 55085324 C A LILRA2 5'UTR 0.08 TCGA-49-AAR2-01 19 55179429 55179429 C A LILRB4 Missense_Mutation p.P436T 0.25 tolerated(0.05) benign(0.007) TCGA-49-AAR2-01 19 55708003 55708003 G T PTPRH Missense_Mutation p.A715D 0.34 benign(0.001) TCGA-49-AAR2-01 19 57910297 57910297 G T ZNF548 Missense_Mutation p.E226D 0.27 tolerated(0.31) benign(0) TCGA-49-AAR2-01 1 100379110 100379110 A G AGL Missense_Mutation p.E1326G 0.26 deleterious(0.03) benign(0.078) TCGA-49-AAR2-01 1 109810619 109810619 G T CELSR2 Silent p.L2085L 0.24 TCGA-49-AAR2-01 1 11561768 11561768 C A PTCHD2 Missense_Mutation p.A240E 0.60 tolerated_low_confidence(0.61) benign(0.002) TCGA-49-AAR2-01 1 119964439 119964439 G T HSD3B2 Missense_Mutation p.Q105H 0.39 deleterious(0) probably_damaging(0.964) TCGA-49-AAR2-01 1 12726312 12726312 C A AADACL4 Missense_Mutation p.R264S 0.37 tolerated(0.31) benign(0.239) TCGA-49-AAR2-01 1 145416960 145416960 G T HFE2 3'UTR 0.32 TCGA-49-AAR2-01 1 150054882 150054882 G T VPS45 Missense_Mutation p.R340L 0.34 deleterious(0.01) benign(0.261) TCGA-49-AAR2-01 1 152128650 152128650 G A RPTN Nonsense_Mutation p.Q309* 0.33 TCGA-49-AAR2-01 1 155205054 155205054 C T GBA Silent p.Q479Q 0.29 TCGA-49-AAR2-01 1 155447799 155447799 G A ASH1L Missense_Mutation p.S1621F 0.32 deleterious_low_confidence(0) possibly_damaging(0.533) TCGA-49-AAR2-01 1 156810801 156810801 G T INSRR Missense_Mutation p.S1253Y 0.46 deleterious(0.01) possibly_damaging(0.613) TCGA-49-AAR2-01 1 157559097 157559097 G T FCRL4 Silent p.T68T 0.30 TCGA-49-AAR2-01 1 158639345 158639345 G T SPTA1 Silent p.A562A 0.31 TCGA-49-AAR2-01 1 158644423 158644423 C T SPTA1 Nonsense_Mutation p.W385* 0.39 TCGA-49-AAR2-01 1 158687093 158687093 T A OR6K3 Silent p.T271T 0.33 TCGA-49-AAR2-01 1 159778998 159778998 C G FCRL6 Silent p.V189V 0.36 TCGA-49-AAR2-01 1 160151508 160151508 G T ATP1A4 Missense_Mutation p.C924F 0.29 deleterious(0) probably_damaging(0.958) TCGA-49-AAR2-01 1 163038762 163038762 G T RGS4 Missense_Mutation p.G13V 0.19 tolerated_low_confidence(0.22) benign(0) TCGA-49-AAR2-01 1 167097201 167097201 G T DUSP27 Nonsense_Mutation p.E945* 0.43 TCGA-49-AAR2-01 1 167973783 167973783 A C DCAF6 Missense_Mutation p.Q377P 0.26 tolerated(0.09) benign(0.204) TCGA-49-AAR2-01 1 171535843 171535843 G T PRRC2C Missense_Mutation p.G2138V 0.33 possibly_damaging(0.519) TCGA-49-AAR2-01 1 174274171 174274171 G T RABGAP1L Silent p.V457V 0.28 TCGA-49-AAR2-01 1 174418093 174418093 A G GPR52 Missense_Mutation p.I282V 0.28 tolerated(0.22) possibly_damaging(0.759) TCGA-49-AAR2-01 1 175355294 175355294 G T TNR Silent p.R551R 0.31 TCGA-49-AAR2-01 1 176738862 176738862 G T PAPPA2 Missense_Mutation p.E1481D 0.35 tolerated(0.14) benign(0.007) TCGA-49-AAR2-01 1 177905502 177905502 T A SEC16B Splice_Site p.X835_splice 0.31 TCGA-49-AAR2-01 1 179561773 179561773 A C TDRD5 Missense_Mutation p.Q8P 0.31 deleterious(0.03) possibly_damaging(0.786) TCGA-49-AAR2-01 1 180257587 180257587 G A ACBD6 Nonsense_Mutation p.R254* 0.35 TCGA-49-AAR2-01 1 183869370 183869370 G A RGL1 Silent p.E474E 0.27 TCGA-49-AAR2-01 1 186105915 186105915 A T HMCN1 Missense_Mutation p.Q4476H 0.33 probably_damaging(0.997) TCGA-49-AAR2-01 1 186326569 186326569 C - TPR Frame_Shift_Del p.E562Kfs*29 0.25 TCGA-49-AAR2-01 1 18809853 18809853 G T KLHDC7A 3'UTR 0.20 TCGA-49-AAR2-01 1 196227369 196227369 C A KCNT2 Missense_Mutation p.V1056L 0.19 deleterious(0) probably_damaging(0.986) TCGA-49-AAR2-01 1 197297974 197297974 G A CRB1 Missense_Mutation p.D165N 0.38 tolerated(0.12) possibly_damaging(0.521) TCGA-49-AAR2-01 1 201981881 201981881 A G ELF3 Missense_Mutation p.T198A 0.29 tolerated(0.12) benign(0.253) TCGA-49-AAR2-01 1 209968663 209968663 C A IRF6 Missense_Mutation p.Q160H 0.27 deleterious(0.04) benign(0.002) TCGA-49-AAR2-01 1 210411372 210411372 G C SERTAD4 Missense_Mutation p.A23P 0.38 tolerated(0.48) benign(0.422) TCGA-49-AAR2-01 1 213251076 213251076 A T RPS6KC1 Silent p.L60L 0.28 TCGA-49-AAR2-01 1 214551365 214551365 C A PTPN14 Silent p.V875V 0.43 TCGA-49-AAR2-01 1 228464912 228464912 G T OBSCN Missense_Mutation p.A2593S 0.28 benign(0.135) TCGA-49-AAR2-01 1 232629335 232629335 C A SIPA1L2 Nonsense_Mutation p.E519* 0.31 TCGA-49-AAR2-01 1 235944283 235944283 C A LYST Missense_Mutation p.C1699F 0.33 deleterious(0) possibly_damaging(0.572) TCGA-49-AAR2-01 1 237777787 237777787 C A RYR2 Missense_Mutation p.L1787I 0.32 probably_damaging(0.922) TCGA-49-AAR2-01 1 237947200 237947200 C T RYR2 Missense_Mutation p.T4063M 0.24 possibly_damaging(0.787) TCGA-49-AAR2-01 1 240071207 240071207 C G CHRM3 Missense_Mutation p.S152R 0.32 deleterious(0) probably_damaging(0.982) TCGA-49-AAR2-01 1 240341242 240341242 G T FMN2 Missense_Mutation p.A602S 0.17 unknown(0) TCGA-49-AAR2-01 1 242253022 242253022 G C PLD5 3'UTR 0.32 TCGA-49-AAR2-01 1 247769755 247769755 T A OR2G3 Missense_Mutation p.Y290N 0.23 deleterious(0) probably_damaging(0.999) TCGA-49-AAR2-01 1 247875727 247875727 C A OR6F1 Nonsense_Mutation p.E111* 0.29 TCGA-49-AAR2-01 1 247875888 247875888 G A OR6F1 Missense_Mutation p.T57I 0.30 tolerated(0.07) possibly_damaging(0.852) TCGA-49-AAR2-01 1 247978842 247978842 G T OR14A16 Missense_Mutation p.L64I 0.22 deleterious(0) probably_damaging(0.94) TCGA-49-AAR2-01 1 248128923 248128923 C G OR2AK2 Missense_Mutation p.A97G 0.35 deleterious(0.04) benign(0.008) TCGA-49-AAR2-01 1 248201896 248201896 A T OR2L2 Silent p.A109A 0.29 TCGA-49-AAR2-01 1 248262916 248262916 T A OR2L13 Missense_Mutation p.M80K 0.36 deleterious(0) benign(0.342) TCGA-49-AAR2-01 1 31821807 31821807 A T ZCCHC17 Nonsense_Mutation p.R184* 0.31 TCGA-49-AAR2-01 1 35223433 35223433 C T GJB5 Missense_Mutation p.P168S 0.21 deleterious(0) probably_damaging(1) TCGA-49-AAR2-01 1 46724394 46724394 A G RAD54L Missense_Mutation p.K83E 0.36 deleterious(0.02) probably_damaging(0.933) TCGA-49-AAR2-01 1 55073731 55073731 A T ACOT11 Missense_Mutation p.Q540L 0.47 deleterious(0.04) benign(0.091) TCGA-49-AAR2-01 1 57258255 57258255 C A C1orf168 Missense_Mutation p.Q77H 0.31 deleterious(0) probably_damaging(0.957) TCGA-49-AAR2-01 1 57284993 57284993 C A C1orf168 5'UTR 0.21 TCGA-49-AAR2-01 1 57378102 57378102 G T C8A Silent p.R469R 0.35 TCGA-49-AAR2-01 1 57415345 57415345 T A C8B Silent p.A249A 0.22 TCGA-49-AAR2-01 1 57415346 57415346 G T C8B Missense_Mutation p.A249E 0.22 tolerated(0.55) benign(0.003) TCGA-49-AAR2-01 1 66723131 66723131 G T PDE4B Intron 0.27 TCGA-49-AAR2-01 1 68895575 68895575 C T RPE65 Missense_Mutation p.G496R 0.33 tolerated(0.13) possibly_damaging(0.832) TCGA-49-AAR2-01 1 75172043 75172043 G A CRYZ Silent p.A309A 0.32 TCGA-49-AAR2-01 1 76356419 76356419 C A MSH4 Silent p.L755L 0.20 TCGA-49-AAR2-01 1 79107195 79107195 G T IFI44L Nonsense_Mutation p.E409* 0.37 TCGA-49-AAR2-01 1 86898069 86898069 C A CLCA2 Missense_Mutation p.T201K 0.25 deleterious(0.01) possibly_damaging(0.828) TCGA-49-AAR2-01 1 86905977 86905977 C A CLCA2 Silent p.A450A 0.26 TCGA-49-AAR2-01 1 93300429 93300459 TATGCTGCAGCATATTGTACTGGCCTGCTGC - RPL5 Frame_Shift_Del p.Y95Wfs*21 0.24 TCGA-49-AAR2-01 1 93812254 93812254 A G DR1 Missense_Mutation p.I18V 0.38 tolerated(0.6) benign(0.163) TCGA-49-AAR2-01 20 1629931 1629931 C A SIRPG Missense_Mutation p.W66L 0.26 deleterious(0.01) probably_damaging(0.987) TCGA-49-AAR2-01 20 210327 210327 C A DEFB129 Missense_Mutation p.A156D 0.25 deleterious(0.03) possibly_damaging(0.665) TCGA-49-AAR2-01 20 2375901 2375901 G T TGM6 Silent p.R81R 0.39 TCGA-49-AAR2-01 20 31629806 31629806 G T BPIFB6 Silent p.S391S 0.29 TCGA-49-AAR2-01 20 34219888 34219888 C A CPNE1 Missense_Mutation p.W177C 0.26 deleterious(0.01) probably_damaging(0.98) TCGA-49-AAR2-01 20 34219889 34219889 C A CPNE1 Missense_Mutation p.W177L 0.25 deleterious(0.05) benign(0.167) TCGA-49-AAR2-01 20 37356474 37356474 T A SLC32A1 Missense_Mutation p.L257H 0.45 deleterious(0) probably_damaging(0.996) TCGA-49-AAR2-01 20 40944556 40944556 G A PTPRT Missense_Mutation p.P649L 0.42 deleterious(0) benign(0.007) TCGA-49-AAR2-01 20 43384790 43384790 G T RIMS4 Nonsense_Mutation p.C266* 0.37 TCGA-49-AAR2-01 20 45131627 45131627 C A ZNF334 Silent p.G117G 0.36 TCGA-49-AAR2-01 20 45354891 45354891 G T SLC2A10 Missense_Mutation p.A406S 0.44 tolerated(0.41) benign(0.257) TCGA-49-AAR2-01 20 47990680 47990680 C T KCNB1 Missense_Mutation p.G473S 0.28 tolerated(0.59) benign(0.002) TCGA-49-AAR2-01 20 57897493 57897493 C A EDN3 Intron 0.43 TCGA-49-AAR2-01 20 62597878 62597878 G A ZNF512B Missense_Mutation p.S217L 0.05 tolerated_low_confidence(0.2) benign(0.014) TCGA-49-AAR2-01 21 10933925 10933925 G T TPTE Missense_Mutation p.F318L 0.26 deleterious(0.03) possibly_damaging(0.722) TCGA-49-AAR2-01 21 11038962 11038962 C A BAGE2 RNA 0.04 TCGA-49-AAR2-01 21 32127491 32127491 G T KRTAP21-1 Missense_Mutation p.P69Q 0.46 deleterious_low_confidence(0) unknown(0) TCGA-49-AAR2-01 22 21350250 21350250 A T LZTR1 Splice_Site p.X690_splice 0.53 TCGA-49-AAR2-01 22 42276797 42276797 G T SREBF2 Silent p.L613L 0.50 TCGA-49-AAR2-01 2 113300200 113300200 G T POLR1B Silent p.V43V 0.32 TCGA-49-AAR2-01 2 120128315 120128315 G T DBI Splice_Site p.X104_splice 0.24 TCGA-49-AAR2-01 2 128183772 128183772 A G PROC Missense_Mutation p.K216R 0.34 tolerated(0.09) benign(0.015) TCGA-49-AAR2-01 2 128390856 128390856 C A MYO7B Missense_Mutation p.P1784Q 0.35 deleterious(0) probably_damaging(0.988) TCGA-49-AAR2-01 2 132021730 132021730 C G POTEE Missense_Mutation p.T901S 0.05 tolerated_low_confidence(0.05) benign(0.233) TCGA-49-AAR2-01 2 135744893 135744893 T A MAP3K19 Missense_Mutation p.S517C 0.38 deleterious(0) probably_damaging(0.969) TCGA-49-AAR2-01 2 15753381 15753381 G T DDX1 Silent p.R330R 0.29 TCGA-49-AAR2-01 2 15753382 15753382 G T DDX1 Missense_Mutation p.D331Y 0.29 deleterious(0.05) benign(0.075) TCGA-49-AAR2-01 2 160253876 160253876 C T BAZ2B Missense_Mutation p.A997T 0.20 probably_damaging(0.999) TCGA-49-AAR2-01 2 160604375 160604375 A T MARCH7 Missense_Mutation p.S192C 0.32 deleterious(0) possibly_damaging(0.873) TCGA-49-AAR2-01 2 163005607 163005607 C A GCG Nonsense_Mutation p.E28* 0.29 TCGA-49-AAR2-01 2 182766643 182766643 G T SSFA2 Missense_Mutation p.R288L 0.20 deleterious(0) probably_damaging(0.999) TCGA-49-AAR2-01 2 182766644 182766644 A T SSFA2 Silent p.R288R 0.20 TCGA-49-AAR2-01 2 1926391 1926391 G A MYT1L Missense_Mutation p.R384W 0.11 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-49-AAR2-01 2 198950639 198950639 G T PLCL1 Missense_Mutation p.D800Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-49-AAR2-01 2 198968650 198968650 C T PLCL1 Missense_Mutation p.T1032I 0.26 deleterious(0.03) possibly_damaging(0.566) TCGA-49-AAR2-01 2 207527714 207527714 T A DYTN Nonsense_Mutation p.K516* 0.35 TCGA-49-AAR2-01 2 215866422 215866422 A T ABCA12 Missense_Mutation p.I908N 0.34 deleterious(0) possibly_damaging(0.857) TCGA-49-AAR2-01 2 220147592 220147592 G C DNAJB2 Missense_Mutation p.R129P 0.45 tolerated(0.18) possibly_damaging(0.586) TCGA-49-AAR2-01 2 228882152 228882152 C T SPHKAP Missense_Mutation p.E1140K 0.43 deleterious(0) probably_damaging(0.999) TCGA-49-AAR2-01 2 231407586 231407586 G T SP100 Missense_Mutation p.Q861H 0.34 deleterious(0) benign(0.048) TCGA-49-AAR2-01 2 27428929 27428929 C A SLC5A6 Missense_Mutation p.A182S 0.27 tolerated(0.12) benign(0.058) TCGA-49-AAR2-01 2 29063229 29063229 A G SPDYA Silent p.L248L 0.32 TCGA-49-AAR2-01 2 40397460 40397460 T C SLC8A1 Missense_Mutation p.R667G 0.35 tolerated(0.09) benign(0.101) TCGA-49-AAR2-01 2 40656300 40656300 C A SLC8A1 Missense_Mutation p.G374V 0.30 deleterious(0) probably_damaging(1) TCGA-49-AAR2-01 2 44556126 44556126 C A PREPL Missense_Mutation p.E493D 0.40 deleterious(0.04) possibly_damaging(0.534) TCGA-49-AAR2-01 2 79254292 79254292 A T REG3G Missense_Mutation p.T110S 0.23 tolerated(0.09) possibly_damaging(0.819) TCGA-49-AAR2-01 2 88367407 88367407 C A SMYD1 Missense_Mutation p.N8K 0.34 tolerated(0.49) benign(0.032) TCGA-49-AAR2-01 2 90193400 90193401 - T IGKV1D-13 Frame_Shift_Ins p.C110Lfs*5 0.18 TCGA-49-AAR2-01 3 100373883 100373883 G T GPR128 Silent p.A528A 0.38 TCGA-49-AAR2-01 3 100645221 100645221 C A ABI3BP Nonsense_Mutation p.G69* 0.32 TCGA-49-AAR2-01 3 107492456 107492456 A T BBX Missense_Mutation p.T630S 0.38 deleterious(0) benign(0.174) TCGA-49-AAR2-01 3 124631986 124631986 G T MUC13 Missense_Mutation p.Q395K 0.30 tolerated(0.92) benign(0.004) TCGA-49-AAR2-01 3 124631987 124631987 G T MUC13 Nonsense_Mutation p.Y394* 0.30 TCGA-49-AAR2-01 3 125877381 125877381 C A ALDH1L1 Missense_Mutation p.G87W 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-49-AAR2-01 3 132948146 132948146 A C TMEM108 5'UTR 0.23 TCGA-49-AAR2-01 3 132948147 132948147 G C TMEM108 5'UTR 0.22 TCGA-49-AAR2-01 3 136677019 136677019 G T IL20RB Missense_Mutation p.A22S 0.23 tolerated(0.48) benign(0.051) TCGA-49-AAR2-01 3 138724660 138724660 C A PRR23A Missense_Mutation p.A151S 0.26 tolerated(0.27) probably_damaging(0.998) TCGA-49-AAR2-01 3 142681376 142681376 C G PAQR9 Missense_Mutation p.G268A 0.28 tolerated(0.69) benign(0.005) TCGA-49-AAR2-01 3 142840727 142840727 C A CHST2 Missense_Mutation p.R357S 0.38 deleterious(0) probably_damaging(0.995) TCGA-49-AAR2-01 3 147131188 147131188 C G ZIC1 Missense_Mutation p.S398R 0.28 deleterious(0) possibly_damaging(0.601) TCGA-49-AAR2-01 3 151095935 151095935 G - MED12L Frame_Shift_Del p.E1450Kfs*13 0.08 TCGA-49-AAR2-01 3 151163697 151163697 G T IGSF10 Missense_Mutation p.P1358T 0.37 tolerated(0.12) benign(0.007) TCGA-49-AAR2-01 3 158363516 158363516 T C GFM1 Silent p.T60T 0.32 TCGA-49-AAR2-01 3 164906604 164906604 G T SLITRK3 Missense_Mutation p.A672E 0.33 deleterious(0) probably_damaging(0.996) TCGA-49-AAR2-01 3 167277881 167277881 A T WDR49 Missense_Mutation p.L208M 0.31 deleterious(0) probably_damaging(0.997) TCGA-49-AAR2-01 3 17448048 17448048 C A TBC1D5 Intron 0.54 TCGA-49-AAR2-01 3 176771623 176771623 C A TBL1XR1 Missense_Mutation p.A48S 0.35 tolerated(0.1) possibly_damaging(0.598) TCGA-49-AAR2-01 3 183667904 183667904 C A ABCC5 Missense_Mutation p.R985L 0.15 deleterious(0.01) possibly_damaging(0.597) TCGA-49-AAR2-01 3 19492719 19492719 T A KCNH8 Missense_Mutation p.S550T 0.49 deleterious(0) probably_damaging(0.909) TCGA-49-AAR2-01 3 196281344 196281344 C T WDR53 Missense_Mutation p.S272N 0.34 tolerated(0.43) benign(0) TCGA-49-AAR2-01 3 51265462 51265462 G T DOCK3 Silent p.L530L 0.29 TCGA-49-AAR2-01 3 87018105 87018105 T A VGLL3 Missense_Mutation p.N191I 0.56 tolerated(0.2) benign(0.019) TCGA-49-AAR2-01 3 97868721 97868721 C A OR5H14 Missense_Mutation p.F164L 0.38 tolerated(0.29) benign(0.011) TCGA-49-AAR2-01 3 98001827 98001827 G T OR5H2 Silent p.L32L 0.34 TCGA-49-AAR2-01 3 98073613 98073613 A G OR5K4 Missense_Mutation p.N306D 0.34 tolerated_low_confidence(0.07) benign(0.045) TCGA-49-AAR2-01 4 100348976 100348976 C A ADH7 Missense_Mutation p.G193V 0.36 deleterious(0) probably_damaging(0.999) TCGA-49-AAR2-01 4 108999404 108999404 G T LEF1 Missense_Mutation p.A327E 0.31 deleterious(0) probably_damaging(1) TCGA-49-AAR2-01 4 115748974 115748974 A T NDST4 Nonstop_Mutation p.*873Kext*13 0.30 TCGA-49-AAR2-01 4 115792061 115792061 G T NDST4 Missense_Mutation p.L528I 0.23 deleterious(0) probably_damaging(0.967) TCGA-49-AAR2-01 4 115792089 115792089 G T NDST4 Silent p.T518T 0.19 TCGA-49-AAR2-01 4 155250825 155250825 G A DCHS2 Silent p.H801H 0.23 TCGA-49-AAR2-01 4 155507757 155507757 G T FGA Missense_Mutation p.T275N 0.35 tolerated(0.13) benign(0.403) TCGA-49-AAR2-01 4 164534509 164534509 G T MARCH1 Missense_Mutation p.Q67K 0.23 tolerated(0.81) benign(0.031) TCGA-49-AAR2-01 4 164534510 164534510 G T MARCH1 Missense_Mutation p.S66R 0.21 tolerated(0.06) benign(0.035) TCGA-49-AAR2-01 4 169086414 169086414 C A ANXA10 Silent p.L139L 0.27 TCGA-49-AAR2-01 4 175896889 175896889 G T ADAM29 Missense_Mutation p.K71N 0.37 tolerated(0.12) possibly_damaging(0.6) TCGA-49-AAR2-01 4 176622762 176622762 G T GPM6A Missense_Mutation p.A65E 0.33 deleterious(0.05) benign(0.065) TCGA-49-AAR2-01 4 178243718 178243718 G T NEIL3 Nonsense_Mutation p.G88* 0.26 TCGA-49-AAR2-01 4 187535416 187535416 C T FAT1 Missense_Mutation p.R3053H 0.24 probably_damaging(0.994) TCGA-49-AAR2-01 4 30725575 30725575 C A PCDH7 Missense_Mutation p.S844Y 0.32 tolerated(0.1) benign(0.067) TCGA-49-AAR2-01 4 48035086 48035086 G C NIPAL1 Missense_Mutation p.L149F 0.29 deleterious(0.01) probably_damaging(0.984) TCGA-49-AAR2-01 4 52862167 52862167 C A LRRC66 Missense_Mutation p.A341S 0.23 tolerated(0.21) benign(0.006) TCGA-49-AAR2-01 4 57181961 57181961 G C KIAA1211 Missense_Mutation p.G765R 0.29 tolerated(0.38) probably_damaging(0.979) TCGA-49-AAR2-01 4 65180460 65180460 C T TECRL Missense_Mutation p.G153R 0.28 deleterious(0) probably_damaging(0.996) TCGA-49-AAR2-01 4 66197741 66197741 G T EPHA5 Missense_Mutation p.F986L 0.30 tolerated(0.07) probably_damaging(0.977) TCGA-49-AAR2-01 4 70160401 70160401 C A UGT2B28 Nonsense_Mutation p.Y488* 0.19 TCGA-49-AAR2-01 4 70512987 70512987 A T UGT2A1 Missense_Mutation p.C126S 0.29 deleterious(0.01) probably_damaging(1) TCGA-49-AAR2-01 4 70864184 70864184 G T STATH Missense_Mutation p.L10F 0.35 deleterious_low_confidence(0.02) unknown(0) TCGA-49-AAR2-01 4 88116749 88116749 C - KLHL8 5'UTR 0.16 TCGA-49-AAR2-01 4 89388240 89388240 G - HERC5 Frame_Shift_Del p.G315Efs*23 0.20 TCGA-49-AAR2-01 4 90849102 90849102 T A MMRN1 Missense_Mutation p.F371Y 0.38 tolerated(0.05) probably_damaging(0.965) TCGA-49-AAR2-01 4 94750979 94750979 C A ATOH1 Missense_Mutation p.A301D 0.28 deleterious(0) benign(0.134) TCGA-49-AAR2-01 4 95174133 95174133 G A SMARCAD1 Missense_Mutation p.R419Q 0.35 deleterious(0) probably_damaging(0.998) TCGA-49-AAR2-01 4 96761614 96761614 G C PDHA2 Missense_Mutation p.G105R 0.26 deleterious(0.02) probably_damaging(0.996) TCGA-49-AAR2-01 5 101593785 101593785 T A SLCO4C1 Missense_Mutation p.M379L 0.47 tolerated(1) benign(0.002) TCGA-49-AAR2-01 5 1036466 1036466 G - NKD2 Frame_Shift_Del p.I253Lfs*175 0.30 TCGA-49-AAR2-01 5 11236841 11236841 G T CTNND2 Missense_Mutation p.Q575K 0.40 deleterious(0) probably_damaging(0.997) TCGA-49-AAR2-01 5 126734399 126734399 G A MEGF10 Missense_Mutation p.G231S 0.47 deleterious(0.02) possibly_damaging(0.791) TCGA-49-AAR2-01 5 137346705 137346705 T G FAM13B Missense_Mutation p.T228P 0.35 tolerated(0.09) probably_damaging(0.997) TCGA-49-AAR2-01 5 13788975 13788975 G A DNAH5 Missense_Mutation p.R2833C 0.17 possibly_damaging(0.689) TCGA-49-AAR2-01 5 140167372 140167372 G T PCDHA1 Silent p.V499V 0.32 TCGA-49-AAR2-01 5 140167373 140167373 G T PCDHA1 Missense_Mutation p.G500C 0.33 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-49-AAR2-01 5 140783601 140783601 C A PCDHGA9 Missense_Mutation p.P361H 0.74 deleterious_low_confidence(0.01) possibly_damaging(0.554) TCGA-49-AAR2-01 5 174869940 174869940 G T DRD1 Silent p.R55R 0.48 TCGA-49-AAR2-01 5 178359633 178359633 G A ZFP2 Missense_Mutation p.C440Y 0.45 deleterious(0) probably_damaging(1) TCGA-49-AAR2-01 5 178413976 178413976 C A GRM6 Nonsense_Mutation p.G455* 0.54 TCGA-49-AAR2-01 5 179135284 179135284 G C CANX Missense_Mutation p.D117H 0.32 deleterious(0) probably_damaging(1) TCGA-49-AAR2-01 5 1879697 1879697 C A IRX4 Silent p.R219R 0.35 TCGA-49-AAR2-01 5 24535289 24535289 A G CDH10 Missense_Mutation p.L249S 0.19 deleterious(0) probably_damaging(0.994) TCGA-49-AAR2-01 5 33751614 33751614 C G ADAMTS12 Missense_Mutation p.E177Q 0.37 tolerated(0.05) probably_damaging(1) TCGA-49-AAR2-01 5 54636003 54636003 G T SKIV2L2 Missense_Mutation p.M227I 0.32 deleterious(0) probably_damaging(0.998) TCGA-49-AAR2-01 5 9052019 9052019 G T SEMA5A Missense_Mutation p.S937R 0.43 tolerated(0.17) possibly_damaging(0.784) TCGA-49-AAR2-01 6 105609562 105609562 C A POPDC3 Missense_Mutation p.A75S 0.38 tolerated(0.15) possibly_damaging(0.718) TCGA-49-AAR2-01 6 116833095 116833095 G C FAM26E Missense_Mutation p.G79A 0.33 deleterious(0.03) probably_damaging(1) TCGA-49-AAR2-01 6 128399979 128399979 T A PTPRK Missense_Mutation p.Q621L 0.35 tolerated(0.07) possibly_damaging(0.801) TCGA-49-AAR2-01 6 132181631 132181631 G C ENPP1 Missense_Mutation p.W300C 0.25 deleterious(0) probably_damaging(1) TCGA-49-AAR2-01 6 133072648 133072648 A G VNN2 Missense_Mutation p.I279T 0.30 deleterious(0) possibly_damaging(0.827) TCGA-49-AAR2-01 6 146720448 146720448 G C GRM1 Missense_Mutation p.G758A 0.27 tolerated(0.15) probably_damaging(0.923) TCGA-49-AAR2-01 6 152464860 152464860 G T SYNE1 Silent p.G8339G 0.36 TCGA-49-AAR2-01 6 159677579 159677579 A G FNDC1 Missense_Mutation p.Y1697C 0.21 deleterious(0) probably_damaging(0.999) TCGA-49-AAR2-01 6 160543208 160543208 G T SLC22A1 Missense_Mutation p.G81C 0.24 deleterious(0) possibly_damaging(0.905) TCGA-49-AAR2-01 6 160543209 160543209 G T SLC22A1 Missense_Mutation p.G81V 0.22 deleterious(0.01) possibly_damaging(0.717) TCGA-49-AAR2-01 6 161137729 161137729 C A PLG Missense_Mutation p.L241M 0.45 tolerated(0.1) benign(0.121) TCGA-49-AAR2-01 6 24578420 24578420 C A KIAA0319 Missense_Mutation p.G475W 0.26 deleterious(0) probably_damaging(1) TCGA-49-AAR2-01 6 26124712 26124712 G T HIST1H2AC Missense_Mutation p.L84F 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.74) TCGA-49-AAR2-01 6 26638348 26638348 T C ZNF322 Missense_Mutation p.H145R 0.34 deleterious(0) possibly_damaging(0.498) TCGA-49-AAR2-01 6 28253398 28253398 G T PGBD1 Missense_Mutation p.C156F 0.35 tolerated_low_confidence(0.18) benign(0.033) TCGA-49-AAR2-01 6 31516081 31516081 C T NFKBIL1 Missense_Mutation p.P67S 0.29 tolerated(0.84) probably_damaging(0.994) TCGA-49-AAR2-01 6 35565157 35565157 C A FKBP5 Missense_Mutation p.G178V 0.33 deleterious(0) possibly_damaging(0.866) TCGA-49-AAR2-01 6 42986380 42986380 A G KLHDC3 Missense_Mutation p.N248S 0.03 tolerated(0.11) benign(0.042) TCGA-49-AAR2-01 6 46657114 46657114 C T TDRD6 Missense_Mutation p.H417Y 0.27 deleterious(0) possibly_damaging(0.797) TCGA-49-AAR2-01 6 49753640 49753640 A G PGK2 3'UTR 0.42 TCGA-49-AAR2-01 6 54095597 54095597 C A MLIP Missense_Mutation p.P400Q 0.32 deleterious(0) probably_damaging(1) TCGA-49-AAR2-01 6 62604607 62604607 C T KHDRBS2 Missense_Mutation p.R248Q 0.39 deleterious(0.02) benign(0.171) TCGA-49-AAR2-01 6 7182132 7182132 A G RREB1 5'UTR 0.30 TCGA-49-AAR2-01 7 100371365 100371365 G A ZAN Missense_Mutation p.E1886K 0.44 unknown(0) TCGA-49-AAR2-01 7 100682169 100682169 C G MUC17 Missense_Mutation p.T2491S 0.28 probably_damaging(0.931) TCGA-49-AAR2-01 7 120737788 120737788 G A CPED1 Missense_Mutation p.D218N 0.32 tolerated(0.29) benign(0.001) TCGA-49-AAR2-01 7 126882832 126882832 T A GRM8 Nonsense_Mutation p.K143* 0.38 TCGA-49-AAR2-01 7 130067840 130067840 G A CEP41 Missense_Mutation p.P18L 0.34 deleterious(0.04) probably_damaging(0.998) TCGA-49-AAR2-01 7 133876444 133876444 G T LRGUK Missense_Mutation p.G458W 0.32 deleterious(0.01) probably_damaging(1) TCGA-49-AAR2-01 7 135419012 135419012 T A FAM180A Missense_Mutation p.E78V 0.36 deleterious(0.01) probably_damaging(0.992) TCGA-49-AAR2-01 7 136700760 136700760 A T CHRM2 Missense_Mutation p.K383M 0.30 deleterious(0) probably_damaging(0.992) TCGA-49-AAR2-01 7 141619070 141619070 A G OR9A4 Missense_Mutation p.Y132C 0.29 deleterious(0.01) benign(0.12) TCGA-49-AAR2-01 7 142197737 142197737 C T TRBV11-2 RNA 0.35 TCGA-49-AAR2-01 7 142561910 142561910 G T EPHB6 Missense_Mutation p.G118C 0.28 deleterious(0) probably_damaging(0.958) TCGA-49-AAR2-01 7 143701391 143701391 T - OR6B1 Frame_Shift_Del p.L101Rfs*35 0.28 TCGA-49-AAR2-01 7 150325169 150325169 G T GIMAP6 Missense_Mutation p.L173M 0.29 deleterious(0) probably_damaging(1) TCGA-49-AAR2-01 7 150389904 150389904 G T GIMAP2 Missense_Mutation p.G177V 0.31 tolerated(0.1) probably_damaging(0.921) TCGA-49-AAR2-01 7 150704258 150704258 C A NOS3 Missense_Mutation p.T669K 0.30 tolerated(0.43) probably_damaging(0.996) TCGA-49-AAR2-01 7 15725846 15725846 G T MEOX2 Missense_Mutation p.A61D 0.33 tolerated(0.13) benign(0.044) TCGA-49-AAR2-01 7 26883754 26883754 C A SKAP2 Missense_Mutation p.D68Y 0.35 tolerated(0.09) possibly_damaging(0.832) TCGA-49-AAR2-01 7 27140324 27140324 C A HOXA2 3'UTR 0.32 TCGA-49-AAR2-01 7 37780176 37780176 G T GPR141 Missense_Mutation p.V61F 0.39 deleterious(0) possibly_damaging(0.583) TCGA-49-AAR2-01 7 37907467 37907467 T A NME8 Missense_Mutation p.V262D 0.35 tolerated(0.59) benign(0.002) TCGA-49-AAR2-01 7 4011200 4011200 G T SDK1 Missense_Mutation p.R606L 0.41 deleterious(0.04) benign(0.342) TCGA-49-AAR2-01 7 4014072 4014072 G A SDK1 Missense_Mutation p.G630E 0.33 deleterious(0) probably_damaging(0.998) TCGA-49-AAR2-01 7 48311474 48311474 G T ABCA13 Silent p.V737V 0.44 TCGA-49-AAR2-01 7 48315957 48315957 C A ABCA13 Missense_Mutation p.L2232I 0.40 possibly_damaging(0.798) TCGA-49-AAR2-01 7 49842354 49842354 A T VWC2 Silent p.L248L 0.35 TCGA-49-AAR2-01 7 49951826 49951826 C A VWC2 3'UTR 0.26 TCGA-49-AAR2-01 7 72419879 72419879 G T POM121 3'UTR 0.52 TCGA-49-AAR2-01 7 74470046 74470046 C A WBSCR16 Missense_Mutation p.R398L 0.32 tolerated(0.2) benign(0.006) TCGA-49-AAR2-01 7 76912065 76912065 G A CCDC146 Missense_Mutation p.R704K 0.33 tolerated(0.62) benign(0.002) TCGA-49-AAR2-01 7 80292390 80292390 G T CD36 Missense_Mutation p.V172F 0.30 tolerated(0.38) benign(0.17) TCGA-49-AAR2-01 7 82387953 82387953 C A PCLO Missense_Mutation p.D5123Y 0.34 unknown(0) TCGA-49-AAR2-01 7 82582900 82582900 C G PCLO Missense_Mutation p.D2457H 0.14 unknown(0) TCGA-49-AAR2-01 7 87022304 87022304 G T CROT Missense_Mutation p.G575C 0.31 deleterious(0) probably_damaging(1) TCGA-49-AAR2-01 7 92731371 92731371 A T SAMD9 Missense_Mutation p.L1347H 0.30 deleterious(0) probably_damaging(0.987) TCGA-49-AAR2-01 8 104444915 104444915 T A DCAF13 Missense_Mutation p.I396N 0.19 deleterious(0) possibly_damaging(0.891) TCGA-49-AAR2-01 8 10555278 10555278 G T C8orf74 Silent p.L137L 0.39 TCGA-49-AAR2-01 8 108306161 108306161 T A ANGPT1 Intron 0.44 TCGA-49-AAR2-01 8 108913292 108913292 G T RSPO2 3'UTR 0.41 TCGA-49-AAR2-01 8 113323298 113323298 T C CSMD3 Silent p.R2598R 0.25 TCGA-49-AAR2-01 8 114389069 114389069 C A CSMD3 Intron 0.49 TCGA-49-AAR2-01 8 120431488 120431488 G T NOV Missense_Mutation p.R227L 0.20 deleterious(0) probably_damaging(0.95) TCGA-49-AAR2-01 8 124988255 124988255 C T FER1L6 Silent p.T267T 0.51 TCGA-49-AAR2-01 8 145729999 145729999 C G GPT Missense_Mutation p.P59A 0.21 deleterious(0) possibly_damaging(0.594) TCGA-49-AAR2-01 8 1639731 1639731 G T DLGAP2 Missense_Mutation p.S832I 0.28 deleterious(0) possibly_damaging(0.878) TCGA-49-AAR2-01 8 22386066 22386066 C A PPP3CC Missense_Mutation p.L373M 0.24 deleterious(0.03) possibly_damaging(0.569) TCGA-49-AAR2-01 8 27824000 27824000 G T SCARA5 Missense_Mutation p.L58M 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-49-AAR2-01 8 28989982 28989982 C A KIF13B Nonsense_Mutation p.E929* 0.21 TCGA-49-AAR2-01 8 35583744 35583744 C A UNC5D Missense_Mutation p.L460M 0.43 deleterious(0.04) possibly_damaging(0.553) TCGA-49-AAR2-01 8 37963240 37963240 G A ASH2L Missense_Mutation p.G58R 0.35 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-49-AAR2-01 8 38285497 38285497 A T FGFR1 Missense_Mutation p.L219Q 0.41 deleterious(0) probably_damaging(1) TCGA-49-AAR2-01 8 39114745 39114745 C A ADAM32 Missense_Mutation p.T682N 0.30 tolerated(0.72) benign(0.003) TCGA-49-AAR2-01 8 39114746 39114746 C A ADAM32 Silent p.T682T 0.30 TCGA-49-AAR2-01 8 43037364 43037364 G T HGSNAT Missense_Mutation p.E363D 0.30 tolerated(0.19) benign(0.099) TCGA-49-AAR2-01 8 51617312 51617312 G T SNTG1 Missense_Mutation p.Q397H 0.29 deleterious(0.03) possibly_damaging(0.885) TCGA-49-AAR2-01 8 52320632 52320632 C A PXDNL Silent p.L1184L 0.31 TCGA-49-AAR2-01 8 53598042 53598042 G C RB1CC1 5'UTR 0.32 TCGA-49-AAR2-01 8 55060220 55060220 G T MRPL15 Missense_Mutation p.A278S 0.22 tolerated(0.62) benign(0.002) TCGA-49-AAR2-01 8 55537391 55537391 G T RP1 Missense_Mutation p.D317Y 0.43 deleterious(0) probably_damaging(0.992) TCGA-49-AAR2-01 8 66963831 66963831 G T DNAJC5B Nonsense_Mutation p.G17* 0.26 TCGA-49-AAR2-01 8 68395958 68395958 C A CPA6 Intron 0.42 TCGA-49-AAR2-01 8 6873463 6873463 C A DEFA3 3'UTR 0.11 TCGA-49-AAR2-01 8 69017643 69017643 A T PREX2 Intron 0.30 TCGA-49-AAR2-01 8 7320377 7320377 C A SPAG11B Silent p.S22S 0.14 TCGA-49-AAR2-01 8 7320378 7320378 G A SPAG11B Missense_Mutation p.S22L 0.14 tolerated(1) benign(0.002) TCGA-49-AAR2-01 8 77766190 77766190 G C ZFHX4 Missense_Mutation p.D2345H 0.19 probably_damaging(0.916) TCGA-49-AAR2-01 8 77767531 77767531 G A ZFHX4 Missense_Mutation p.G2792R 0.11 probably_damaging(0.984) TCGA-49-AAR2-01 8 87076548 87076548 C T PSKH2 Missense_Mutation p.M166I 0.18 deleterious(0.01) probably_damaging(0.968) TCGA-49-AAR2-01 9 119976690 119976690 G C ASTN2 Missense_Mutation p.T321S 0.48 tolerated_low_confidence(0.05) unknown(0) TCGA-49-AAR2-01 9 121930411 121930411 A T BRINP1 Missense_Mutation p.C413S 0.38 deleterious(0) possibly_damaging(0.879) TCGA-49-AAR2-01 9 130826124 130826124 C A NAIF1 Silent p.T189T 0.33 TCGA-49-AAR2-01 9 131504918 131504918 G A ZER1 Missense_Mutation p.T489M 0.27 tolerated(0.13) benign(0.242) TCGA-49-AAR2-01 9 135105962 135105962 C A NTNG2 Missense_Mutation p.A345D 0.23 tolerated(0.35) benign(0.013) TCGA-49-AAR2-01 9 16437463 16437463 G T BNC2 Silent p.I243I 0.58 TCGA-49-AAR2-01 9 16437498 16437498 G A BNC2 Missense_Mutation p.R232C 0.50 deleterious(0) probably_damaging(0.979) TCGA-49-AAR2-01 9 27566843 27566843 C A C9orf72 Silent p.V92V 0.80 TCGA-49-AAR2-01 9 34497159 34497159 G A DNAI1 Missense_Mutation p.R288Q 0.56 deleterious(0) probably_damaging(0.998) TCGA-49-AAR2-01 9 39888021 39888021 C A SPATA31A2 Silent p.A336A 0.53 TCGA-49-AAR2-01 9 5185570 5185570 C T INSL6 Nonsense_Mutation p.W11* 0.43 TCGA-49-AAR2-01 9 89763720 89763720 G T C9orf170 Silent p.G25G 0.42 TCGA-49-AAR2-01 X 125298608 125298608 G T DCAF12L2 Missense_Mutation p.H434N 0.58 deleterious(0) probably_damaging(0.999) TCGA-49-AAR2-01 X 125298609 125298609 G T DCAF12L2 Silent p.T433T 0.57 TCGA-49-AAR2-01 X 129264032 129264032 G A AIFM1 Silent p.G561G 0.66 TCGA-49-AAR2-01 X 135427682 135427682 G A GPR112 Missense_Mutation p.R606Q 0.60 tolerated(0.08) benign(0.002) TCGA-49-AAR2-01 X 152722603 152722603 A T HAUS7 Missense_Mutation p.S156R 0.55 tolerated(0.21) benign(0.013) TCGA-49-AAR2-01 X 153132837 153132837 G A L1CAM Missense_Mutation p.S704F 0.72 deleterious(0) probably_damaging(0.999) TCGA-49-AAR2-01 X 68748988 68748988 C A FAM155B Silent p.L338L 0.54 TCGA-49-AAR2-01 X 78216564 78216564 G C P2RY10 Missense_Mutation p.A183P 0.58 deleterious(0.01) probably_damaging(0.968) TCGA-49-AAR2-01 X 83128914 83128914 G C CYLC1 Missense_Mutation p.A400P 0.60 tolerated(0.13) unknown(0) TCGA-49-AAR2-01 X 86068263 86068263 T A DACH2 Missense_Mutation p.V507D 0.80 tolerated(0.1) benign(0.006) TCGA-49-AAR2-01 X 91132726 91132726 G T PCDH11X Missense_Mutation p.G496V 0.52 deleterious(0) probably_damaging(1) TCGA-49-AAR3-01 10 101451153 101451153 G A ENTPD7 Missense_Mutation p.E241K 0.07 tolerated(0.89) benign(0.004) TCGA-49-AAR3-01 10 16794589 16794589 T C RSU1 Missense_Mutation p.K183E 0.16 deleterious(0.01) possibly_damaging(0.862) TCGA-49-AAR3-01 10 45472931 45472931 G C C10orf10 Missense_Mutation p.S183C 0.06 tolerated(0.18) benign(0.001) TCGA-49-AAR3-01 10 55721627 55721627 T A PCDH15 Missense_Mutation p.Y965F 0.09 deleterious(0.01) probably_damaging(1) TCGA-49-AAR3-01 10 69407237 69407237 T A CTNNA3 Missense_Mutation p.D12V 0.14 deleterious(0) benign(0.181) TCGA-49-AAR3-01 11 101832559 101832559 T C KIAA1377 Missense_Mutation p.Y265H 0.22 deleterious(0.03) benign(0.258) TCGA-49-AAR3-01 11 111368829 111368829 C A BTG4 Missense_Mutation p.D69Y 0.15 deleterious(0) probably_damaging(0.995) TCGA-49-AAR3-01 11 113076338 113076338 C A NCAM1 Missense_Mutation p.P206Q 0.11 deleterious(0) probably_damaging(0.995) TCGA-49-AAR3-01 11 123625059 123625059 T A OR6X1 Silent p.P56P 0.18 TCGA-49-AAR3-01 11 124742379 124742379 T A ROBO3 Missense_Mutation p.Y421N 0.24 deleterious(0) probably_damaging(0.993) TCGA-49-AAR3-01 11 44079905 44079905 C T ACCSL Missense_Mutation p.R456W 0.18 deleterious(0.03) possibly_damaging(0.529) TCGA-49-AAR3-01 11 58035162 58035162 G T OR10W1 Missense_Mutation p.L57I 0.08 deleterious(0) probably_damaging(0.997) TCGA-49-AAR3-01 11 59132811 59132811 A G OR5AN1 Missense_Mutation p.R294G 0.25 deleterious(0) probably_damaging(0.928) TCGA-49-AAR3-01 11 62285312 62285312 C A AHNAK Missense_Mutation p.G5526V 0.14 possibly_damaging(0.786) TCGA-49-AAR3-01 11 63884833 63884833 G A FLRT1 Missense_Mutation p.G365D 0.07 tolerated(0.14) possibly_damaging(0.638) TCGA-49-AAR3-01 11 65404028 65404028 G A PCNXL3 Silent p.R1920R 0.23 TCGA-49-AAR3-01 11 67202510 67202510 C T RPS6KB2 Missense_Mutation p.P440L 0.09 tolerated(0.16) unknown(0) TCGA-49-AAR3-01 11 76255390 76255390 C T C11orf30 Missense_Mutation p.P933S 0.10 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-49-AAR3-01 11 78412616 78412616 A G TENM4 Missense_Mutation p.L1681P 0.15 deleterious(0) probably_damaging(0.966) TCGA-49-AAR3-01 11 92624092 92624092 C A FAT3 Missense_Mutation p.T4528K 0.13 benign(0.001) TCGA-49-AAR3-01 12 123186800 123186800 G A HCAR2 Missense_Mutation p.A344V 0.03 deleterious_low_confidence(0.02) benign(0.007) TCGA-49-AAR3-01 12 132631860 132631860 A T NOC4L Missense_Mutation p.Q127L 0.17 deleterious(0.04) benign(0.206) TCGA-49-AAR3-01 12 30884405 30884405 G A CAPRIN2 Missense_Mutation p.S311L 0.10 deleterious(0.03) possibly_damaging(0.853) TCGA-49-AAR3-01 12 46246146 46246146 A T ARID2 Nonsense_Mutation p.R1414* 0.11 TCGA-49-AAR3-01 12 7973845 7973845 A T SLC2A14 Missense_Mutation p.V337E 0.06 deleterious(0.01) probably_damaging(0.954) TCGA-49-AAR3-01 12 82752137 82752137 A G CCDC59 Missense_Mutation p.S7P 0.20 tolerated(0.17) benign(0.026) TCGA-49-AAR3-01 12 977281 977281 G A WNK1 Intron 0.05 TCGA-49-AAR3-01 13 25051850 25051850 G A PARP4 Missense_Mutation p.S593L 0.04 tolerated(0.59) benign(0.008) TCGA-49-AAR3-01 13 36141051 36141051 A G NBEA Missense_Mutation p.Y2311C 0.10 deleterious(0) probably_damaging(1) TCGA-49-AAR3-01 13 37573493 37573493 C T ALG5 5'UTR 0.19 TCGA-49-AAR3-01 14 106805230 106805230 C T IGHV4-31 Silent p.T111T 0.04 TCGA-49-AAR3-01 14 20443737 20443737 C A OR4K15 Silent p.S20S 0.16 TCGA-49-AAR3-01 14 20979084 20979084 T G RNASE10 Missense_Mutation p.C152G 0.10 deleterious(0) probably_damaging(1) TCGA-49-AAR3-01 14 51239017 51239017 A T NIN Splice_Site p.X327_splice 0.12 TCGA-49-AAR3-01 14 64491696 64491696 G C SYNE2 Missense_Mutation p.M1969I 0.11 benign(0.01) TCGA-49-AAR3-01 14 64619353 64619353 G C SYNE2 Missense_Mutation p.E5237D 0.06 benign(0.057) TCGA-49-AAR3-01 14 68244965 68244965 C T ZFYVE26 Missense_Mutation p.E1559K 0.09 tolerated(0.09) possibly_damaging(0.453) TCGA-49-AAR3-01 14 78353522 78353522 G T ADCK1 Missense_Mutation p.R171L 0.08 deleterious(0.04) benign(0.232) TCGA-49-AAR3-01 15 22473066 22473066 C A IGHV4OR15-8 Missense_Mutation p.G69W 0.04 deleterious(0) probably_damaging(0.949) TCGA-49-AAR3-01 15 65489205 65489205 G T CILP Missense_Mutation p.S1140Y 0.12 deleterious(0.02) benign(0.109) TCGA-49-AAR3-01 16 20492190 20492190 C A ACSM2A Missense_Mutation p.P486T 0.07 deleterious(0) possibly_damaging(0.806) TCGA-49-AAR3-01 16 22926884 22926884 G A HS3ST2 3'UTR 0.08 TCGA-49-AAR3-01 16 31073129 31073129 C A ZNF668 Missense_Mutation p.A397S 0.12 tolerated(0.24) benign(0.058) TCGA-49-AAR3-01 16 68200854 68200854 A G NFATC3 Silent p.V570V 0.07 TCGA-49-AAR3-01 16 70841945 70841945 G T HYDIN Missense_Mutation p.H4968Q 0.15 possibly_damaging(0.86) TCGA-49-AAR3-01 16 71319810 71319810 C A CMTR2 Missense_Mutation p.R5I 0.10 deleterious_low_confidence(0) benign(0.157) TCGA-49-AAR3-01 16 72198809 72198809 C G PMFBP1 Missense_Mutation p.E7Q 0.20 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-49-AAR3-01 16 72821307 72821307 C A ZFHX3 Missense_Mutation p.R3623L 0.20 unknown(0) TCGA-49-AAR3-01 16 72832554 72832554 C G ZFHX3 Missense_Mutation p.D1343H 0.15 possibly_damaging(0.737) TCGA-49-AAR3-01 16 82033722 82033722 C T SDR42E1 Missense_Mutation p.R59H 0.11 tolerated(0.06) benign(0.082) TCGA-49-AAR3-01 16 84227767 84227767 C T ADAD2 Missense_Mutation p.R192C 0.18 deleterious_low_confidence(0.02) benign(0) TCGA-49-AAR3-01 16 85936586 85936586 C T IRF8 Intron 0.10 TCGA-49-AAR3-01 16 8890247 8890247 G A TMEM186 Silent p.F68F 0.09 TCGA-49-AAR3-01 17 29552175 29552175 T - NF1 Frame_Shift_Del p.S637Vfs*51 0.20 TCGA-49-AAR3-01 17 33495174 33495174 C A UNC45B Missense_Mutation p.L416M 0.13 deleterious(0.03) possibly_damaging(0.714) TCGA-49-AAR3-01 17 72588474 72588474 A G C17orf77 Missense_Mutation p.I97V 0.15 tolerated_low_confidence(1) benign(0) TCGA-49-AAR3-01 17 7577058 7577058 C - TP53 Frame_Shift_Del p.E294Sfs*51 0.14 TCGA-49-AAR3-01 17 8135774 8135774 C G CTC1 Missense_Mutation p.E655D 0.07 deleterious(0.03) benign(0.125) TCGA-49-AAR3-01 18 23807122 23807122 G C TAF4B Silent p.P75P 0.13 TCGA-49-AAR3-01 18 28574289 28574289 T A DSC3 Missense_Mutation p.Y848F 0.07 deleterious(0) probably_damaging(0.999) TCGA-49-AAR3-01 18 39584320 39584320 G T PIK3C3 Missense_Mutation p.A329S 0.12 deleterious(0.01) probably_damaging(0.974) TCGA-49-AAR3-01 18 56936259 56936259 C A RAX Missense_Mutation p.G340W 0.16 deleterious(0) probably_damaging(1) TCGA-49-AAR3-01 18 72234501 72234501 G T CNDP1 Missense_Mutation p.G197W 0.08 deleterious(0) probably_damaging(1) TCGA-49-AAR3-01 19 10124225 10124225 G T RDH8 Missense_Mutation p.G38C 0.12 deleterious(0) probably_damaging(0.999) TCGA-49-AAR3-01 19 10610408 10610408 G C KEAP1 Missense_Mutation p.A101G 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-49-AAR3-01 19 34925775 34925775 G A UBA2 Missense_Mutation p.A121T 0.14 deleterious(0) probably_damaging(0.992) TCGA-49-AAR3-01 19 50905625 50905625 G T POLD1 Missense_Mutation p.E251D 0.09 tolerated(0.6) possibly_damaging(0.46) TCGA-49-AAR3-01 19 50910318 50910318 C A POLD1 Silent p.R525R 0.06 TCGA-49-AAR3-01 19 51958820 51958820 G T SIGLEC8 Silent p.T301T 0.09 TCGA-49-AAR3-01 19 53958642 53958642 G T ZNF761 RNA 0.09 TCGA-49-AAR3-01 19 54784317 54784317 C A LILRB2 Splice_Site p.X12_splice 0.04 TCGA-49-AAR3-01 19 54872783 54872783 G A LAIR1 Missense_Mutation p.P35L 0.14 deleterious(0) probably_damaging(0.995) TCGA-49-AAR3-01 19 57646695 57646695 C T ZIM3 Missense_Mutation p.C337Y 0.10 deleterious(0) probably_damaging(1) TCGA-49-AAR3-01 1 112303770 112303770 C A DDX20 Intron 0.09 TCGA-49-AAR3-01 1 120468421 120468421 C A NOTCH2 Missense_Mutation p.A1340S 0.17 tolerated(0.43) benign(0.057) TCGA-49-AAR3-01 1 120468422 120468422 C A NOTCH2 Silent p.G1339G 0.17 TCGA-49-AAR3-01 1 151271339 151271339 C T PI4KB Missense_Mutation p.V666M 0.12 tolerated(0.06) probably_damaging(0.997) TCGA-49-AAR3-01 1 152009405 152009405 G A S100A11 5'UTR 0.06 TCGA-49-AAR3-01 1 152284542 152284542 C A FLG Missense_Mutation p.R940S 0.06 possibly_damaging(0.864) TCGA-49-AAR3-01 1 152957955 152957955 G C SPRR1A Missense_Mutation p.Q83H 0.07 deleterious(0.03) probably_damaging(0.986) TCGA-49-AAR3-01 1 159163690 159163690 A G CADM3 Missense_Mutation p.N218S 0.15 tolerated(0.15) benign(0.237) TCGA-49-AAR3-01 1 161198846 161198846 C T TOMM40L Silent p.R296R 0.11 TCGA-49-AAR3-01 1 173702953 173702953 G T KLHL20 Missense_Mutation p.R42L 0.05 tolerated(0.25) benign(0.088) TCGA-49-AAR3-01 1 175046591 175046591 C A TNN Missense_Mutation p.L13I 0.06 tolerated(0.21) benign(0.01) TCGA-49-AAR3-01 1 176926852 176926852 A T ASTN1 Missense_Mutation p.C617S 0.07 deleterious(0) benign(0.425) TCGA-49-AAR3-01 1 179322718 179322718 A T SOAT1 Splice_Site p.X533_splice 0.08 TCGA-49-AAR3-01 1 179815445 179815445 C A TOR1AIP2 Missense_Mutation p.V392L 0.13 deleterious(0) possibly_damaging(0.903) TCGA-49-AAR3-01 1 18807608 18807608 G T KLHDC7A Missense_Mutation p.A45S 0.12 tolerated(0.1) benign(0.045) TCGA-49-AAR3-01 1 232619633 232619633 G C SIPA1L2 Missense_Mutation p.T629R 0.11 tolerated(0.09) possibly_damaging(0.842) TCGA-49-AAR3-01 1 240371404 240371404 C A FMN2 Missense_Mutation p.P1098T 0.25 unknown(0) TCGA-49-AAR3-01 1 246719937 246719937 T C TFB2M Missense_Mutation p.T215A 0.06 tolerated(0.08) possibly_damaging(0.552) TCGA-49-AAR3-01 1 27226504 27226504 G T GPATCH3 Silent p.R144R 0.07 TCGA-49-AAR3-01 1 34174715 34174715 C T CSMD2 Missense_Mutation p.E1144K 0.07 tolerated(0.06) benign(0.166) TCGA-49-AAR3-01 1 76211595 76211595 G A ACADM Missense_Mutation p.R239K 0.05 tolerated(1) benign(0.001) TCGA-49-AAR3-01 1 84387042 84387042 T A TTLL7 Missense_Mutation p.K393I 0.08 deleterious(0) probably_damaging(0.996) TCGA-49-AAR3-01 1 85029066 85029066 C A CTBS Silent p.R277R 0.07 TCGA-49-AAR3-01 1 90178300 90178300 A G LRRC8C Silent p.K57K 0.14 TCGA-49-AAR3-01 20 2843550 2843550 A G VPS16 Missense_Mutation p.Y434C 0.09 tolerated(0.14) possibly_damaging(0.907) TCGA-49-AAR3-01 20 33104240 33104240 G T DYNLRB1 5'UTR 0.12 TCGA-49-AAR3-01 20 9560806 9560806 T C PAK7 Missense_Mutation p.M326V 0.11 tolerated(0.38) benign(0) TCGA-49-AAR3-01 21 15889344 15889344 T C SAMSN1 Missense_Mutation p.T118A 0.11 tolerated(0.7) benign(0.023) TCGA-49-AAR3-01 21 32617876 32617876 C T TIAM1 Silent p.A504A 0.07 TCGA-49-AAR3-01 22 26239721 26239721 C T MYO18B Silent p.T1076T 0.10 TCGA-49-AAR3-01 22 38121381 38121381 C T TRIOBP Missense_Mutation p.R940W 0.04 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-49-AAR3-01 22 43625099 43625099 A T SCUBE1 Missense_Mutation p.Y355N 0.25 deleterious(0) benign(0.044) TCGA-49-AAR3-01 22 44602238 44602238 T C PARVG Missense_Mutation p.Y310H 0.06 deleterious(0.02) probably_damaging(0.928) TCGA-49-AAR3-01 2 167328890 167328890 G T SCN7A Missense_Mutation p.A170E 0.33 deleterious(0.04) possibly_damaging(0.872) TCGA-49-AAR3-01 2 170129481 170129481 C A LRP2 Missense_Mutation p.C691F 0.10 probably_damaging(0.999) TCGA-49-AAR3-01 2 198571804 198571804 G T MARS2 Nonsense_Mutation p.G559* 0.09 TCGA-49-AAR3-01 2 198571805 198571805 G T MARS2 Missense_Mutation p.G559V 0.09 deleterious(0) probably_damaging(0.986) TCGA-49-AAR3-01 2 234173652 234173652 C T ATG16L1 Silent p.A168A 0.06 TCGA-49-AAR3-01 2 25016218 25016218 C G PTRHD1 Missense_Mutation p.R10P 0.08 tolerated_low_confidence(0.18) benign(0) TCGA-49-AAR3-01 2 30966445 30966445 G A CAPN13 Missense_Mutation p.R417W 0.12 deleterious(0.02) benign(0.01) TCGA-49-AAR3-01 2 46386864 46386864 G C PRKCE Missense_Mutation p.K680N 0.09 tolerated(0.1) benign(0.022) TCGA-49-AAR3-01 2 68592416 68592416 G T PLEK 5'UTR 0.08 TCGA-49-AAR3-01 2 69204834 69204834 T G GKN1 Missense_Mutation p.N58K 0.06 deleterious(0.04) probably_damaging(0.972) TCGA-49-AAR3-01 2 86716520 86716520 C A KDM3A Silent p.V1131V 0.08 TCGA-49-AAR3-01 3 125831631 125831631 C A ALDH1L1 Silent p.R735R 0.19 TCGA-49-AAR3-01 3 148458929 148458929 G T AGTR1 Missense_Mutation p.S36I 0.11 deleterious(0.01) benign(0.066) TCGA-49-AAR3-01 3 172163129 172163129 G T GHSR Missense_Mutation p.S308Y 0.16 deleterious(0) probably_damaging(0.992) TCGA-49-AAR3-01 3 51429835 51429835 C T RBM15B Silent p.A335A 0.13 TCGA-49-AAR3-01 4 107847036 107847036 G C DKK2 Missense_Mutation p.S98W 0.11 deleterious(0.01) probably_damaging(0.992) TCGA-49-AAR3-01 4 120188564 120188564 A T USP53 Silent p.T354T 0.07 TCGA-49-AAR3-01 4 43032540 43032540 A G GRXCR1 Missense_Mutation p.K286E 0.14 tolerated(0.86) benign(0.022) TCGA-49-AAR3-01 4 515046 515046 C G PIGG Missense_Mutation p.T439S 0.14 tolerated(0.13) benign(0.211) TCGA-49-AAR3-01 4 54440090 54440090 T C LNX1 Missense_Mutation p.H27R 0.11 deleterious(0) probably_damaging(0.997) TCGA-49-AAR3-01 5 112197003 112197003 G T SRP19 5'UTR 0.10 TCGA-49-AAR3-01 5 140222543 140222543 G A PCDHA8 Missense_Mutation p.G546D 0.15 deleterious_low_confidence(0.04) benign(0.144) TCGA-49-AAR3-01 5 15937179 15937179 T A FBXL7 Missense_Mutation p.F454I 0.15 tolerated(0.17) benign(0.055) TCGA-49-AAR3-01 5 26988277 26988277 C A CDH9 Missense_Mutation p.W55L 0.09 deleterious(0) probably_damaging(0.988) TCGA-49-AAR3-01 5 36684092 36684092 C G SLC1A3 Missense_Mutation p.D472E 0.05 deleterious(0) probably_damaging(0.999) TCGA-49-AAR3-01 5 86676363 86676363 G C RASA1 Missense_Mutation p.V881L 0.07 deleterious(0.01) probably_damaging(0.938) TCGA-49-AAR3-01 6 125366470 125366470 C T RNF217 Silent p.Y40Y 0.09 TCGA-49-AAR3-01 6 143093055 143093055 G A HIVEP2 Missense_Mutation p.R941C 0.07 deleterious(0) probably_damaging(0.998) TCGA-49-AAR3-01 6 151773700 151773700 C G C6orf211 Missense_Mutation p.S7C 0.11 tolerated(0.19) possibly_damaging(0.571) TCGA-49-AAR3-01 6 30862414 30862414 G C DDR1 Silent p.P493P 0.15 TCGA-49-AAR3-01 6 4069609 4069609 A G FAM217A Missense_Mutation p.V283A 0.07 tolerated(0.06) benign(0.108) TCGA-49-AAR3-01 6 49407995 49407995 T C MUT Missense_Mutation p.H627R 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-49-AAR3-01 7 100033066 100033066 G A PPP1R35 Missense_Mutation p.P227S 0.07 tolerated(0.07) benign(0.421) TCGA-49-AAR3-01 7 100071908 100071908 G A TSC22D4 Silent p.S306S 0.08 TCGA-49-AAR3-01 7 100699477 100699477 G A MUC17 Missense_Mutation p.D4456N 0.12 unknown(0) TCGA-49-AAR3-01 7 103183252 103183252 A G RELN Silent p.S2199S 0.10 TCGA-49-AAR3-01 7 114298230 114298230 A T FOXP2 Missense_Mutation p.Q484L 0.18 deleterious(0.04) unknown(0) TCGA-49-AAR3-01 7 123599713 123599713 T C SPAM1 Missense_Mutation p.I407T 0.13 deleterious(0) probably_damaging(0.996) TCGA-49-AAR3-01 7 140373447 140373447 T G ADCK2 Missense_Mutation p.L106R 0.12 deleterious(0) probably_damaging(0.999) TCGA-49-AAR3-01 7 27135400 27135400 G A HOXA1 Silent p.A44A 0.12 TCGA-49-AAR3-01 7 77379139 77379139 G A RSBN1L Missense_Mutation p.E368K 0.10 deleterious(0.01) probably_damaging(0.921) TCGA-49-AAR3-01 7 88423780 88423780 G A C7orf62 Silent p.D159D 0.10 TCGA-49-AAR3-01 7 95751169 95751169 G A SLC25A13 Silent p.L579L 0.05 TCGA-49-AAR3-01 7 99917303 99917303 T C SPDYE3 Silent p.L488L 0.18 TCGA-49-AAR3-01 8 136533511 136533511 G T KHDRBS3 Missense_Mutation p.K40N 0.17 tolerated(0.06) benign(0.027) TCGA-49-AAR3-01 8 16026329 16026329 C A MSR1 Missense_Mutation p.A90S 0.05 tolerated(0.58) benign(0.005) TCGA-49-AAR3-01 8 23290518 23290518 C A ENTPD4 Missense_Mutation p.R591L 0.17 deleterious(0.02) benign(0.007) TCGA-49-AAR3-01 8 29927199 29927199 G A TMEM66 Missense_Mutation p.S220L 0.12 tolerated(0.08) benign(0.355) TCGA-49-AAR3-01 8 48648026 48648026 A C SPIDR 3'UTR 0.17 TCGA-49-AAR3-01 8 51306825 51306825 G T SNTG1 Missense_Mutation p.E9D 0.08 tolerated(0.15) benign(0.002) TCGA-49-AAR3-01 8 73982138 73982138 C A SBSPON Missense_Mutation p.Q193H 0.11 deleterious(0.01) possibly_damaging(0.547) TCGA-49-AAR3-01 8 77618463 77618463 C G ZFHX4 Missense_Mutation p.L714V 0.10 possibly_damaging(0.567) TCGA-49-AAR3-01 9 119976636 119976636 C A ASTN2 Splice_Site p.X339_splice 0.05 TCGA-49-AAR3-01 9 134319695 134319695 G T PRRC2B Missense_Mutation p.G198V 0.19 deleterious(0) probably_damaging(1) TCGA-49-AAR3-01 9 71532644 71532644 G T PIP5K1B Nonsense_Mutation p.G318* 0.07 TCGA-49-AAR3-01 X 117520430 117520430 G A WDR44 Intron 0.07 TCGA-49-AAR3-01 X 12736843 12736843 A T FRMPD4 Missense_Mutation p.T1300S 0.19 tolerated_low_confidence(0.15) benign(0.017) TCGA-49-AAR3-01 X 134856760 134856760 A T CT45A1 Nonsense_Mutation p.K179* 0.04 TCGA-49-AAR3-01 X 29972786 29972786 A G IL1RAPL1 Missense_Mutation p.D450G 0.12 deleterious(0) probably_damaging(0.998) TCGA-49-AAR3-01 X 53245255 53245255 C - KDM5C Splice_Site p.X261_splice 0.13 TCGA-49-AAR3-01 X 54955688 54955688 G C TRO Missense_Mutation p.G844A 0.10 tolerated_low_confidence(0.15) unknown(0) TCGA-49-AAR3-01 X 73066947 73066947 C A XIST RNA 0.14 TCGA-49-AAR3-01 X 73066948 73066948 C A XIST RNA 0.13 TCGA-49-AAR3-01 X 73071459 73071459 A T XIST RNA 0.16 TCGA-49-AAR3-01 X 73962790 73962790 C A KIAA2022 Missense_Mutation p.K534N 0.28 deleterious(0) probably_damaging(0.999) TCGA-49-AAR3-01 X 74517491 74517491 T G UPRT Intron 0.23 TCGA-49-AAR3-01 X 78216851 78216851 C A P2RY10 Silent p.P278P 0.26 TCGA-49-AAR3-01 X 84634375 84634375 G T POF1B Missense_Mutation p.H29N 0.27 tolerated_low_confidence(0.07) benign(0.047) TCGA-49-AAR4-01 10 104243940 104243940 C G ACTR1A Missense_Mutation p.E212Q 0.07 deleterious(0) probably_damaging(0.992) TCGA-49-AAR4-01 10 105048207 105048207 C T INA Silent p.L427L 0.05 TCGA-49-AAR4-01 10 105218101 105218101 G T CALHM1 Missense_Mutation p.S136R 0.23 tolerated(0.2) benign(0.025) TCGA-49-AAR4-01 10 105363306 105363306 C G SH3PXD2A Missense_Mutation p.E529Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-49-AAR4-01 10 112266699 112266699 C A DUSP5 Missense_Mutation p.P179T 0.05 deleterious(0) probably_damaging(0.99) TCGA-49-AAR4-01 10 114901022 114901022 T C TCF7L2 Missense_Mutation p.F211S 0.19 deleterious(0) probably_damaging(0.998) TCGA-49-AAR4-01 10 117040929 117040929 G T ATRNL1 Missense_Mutation p.C722F 0.13 deleterious(0) probably_damaging(0.999) TCGA-49-AAR4-01 10 12136089 12136089 G A DHTKD1 Missense_Mutation p.A393T 0.13 deleterious(0) possibly_damaging(0.9) TCGA-49-AAR4-01 10 124395567 124395567 C T DMBT1 Silent p.S2074S 0.15 TCGA-49-AAR4-01 10 124697225 124697225 C A C10orf88 Missense_Mutation p.V367F 0.10 tolerated(0.06) possibly_damaging(0.868) TCGA-49-AAR4-01 10 134898466 134898466 G T GPR123 5'Flank 0.07 TCGA-49-AAR4-01 10 135126157 135126157 G T ZNF511 Intron 0.16 TCGA-49-AAR4-01 10 18803220 18803220 C A CACNB2 Missense_Mutation p.N242K 0.08 tolerated(0.16) possibly_damaging(0.725) TCGA-49-AAR4-01 10 18803221 18803221 C T CACNB2 Missense_Mutation p.H243Y 0.08 tolerated(0.07) benign(0.258) TCGA-49-AAR4-01 10 21804583 21804583 C G SKIDA1 Missense_Mutation p.E723D 0.05 deleterious(0.02) unknown(0) TCGA-49-AAR4-01 10 30336464 30336464 G T KIAA1462 Missense_Mutation p.A93E 0.08 tolerated(0.45) benign(0.186) TCGA-49-AAR4-01 10 37508317 37508317 C A ANKRD30A Missense_Mutation p.A1170E 0.18 deleterious(0.01) benign(0.066) TCGA-49-AAR4-01 10 43279993 43279993 G C BMS1 Missense_Mutation p.V51L 0.07 tolerated(0.1) benign(0.257) TCGA-49-AAR4-01 10 5693176 5693176 C A ASB13 Missense_Mutation p.G128W 0.08 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 10 61414069 61414069 T A SLC16A9 Missense_Mutation p.R239W 0.09 deleterious(0.01) possibly_damaging(0.518) TCGA-49-AAR4-01 10 72511376 72511376 C A ADAMTS14 Missense_Mutation p.A860D 0.22 deleterious(0) possibly_damaging(0.864) TCGA-49-AAR4-01 10 75855509 75855509 C A VCL Silent p.R547R 0.08 TCGA-49-AAR4-01 10 8111466 8111466 G T GATA3 Missense_Mutation p.A319S 0.11 deleterious(0.02) benign(0.321) TCGA-49-AAR4-01 10 96466664 96466664 G C CYP2C18 Missense_Mutation p.D256H 0.07 deleterious(0) possibly_damaging(0.715) TCGA-49-AAR4-01 10 98146737 98146737 G C TLL2 Missense_Mutation p.L609V 0.06 deleterious(0) possibly_damaging(0.907) TCGA-49-AAR4-01 11 110453081 110453081 C A ARHGAP20 Missense_Mutation p.V562F 0.07 tolerated(0.28) benign(0.282) TCGA-49-AAR4-01 11 116706973 116706973 C A APOA1 Missense_Mutation p.A119S 0.14 tolerated(0.16) benign(0.044) TCGA-49-AAR4-01 11 117307969 117307969 G T DSCAML1 Missense_Mutation p.A1590D 0.10 deleterious(0.01) benign(0.005) TCGA-49-AAR4-01 11 118343259 118343259 C G KMT2A Nonsense_Mutation p.S462* 0.06 TCGA-49-AAR4-01 11 12023865 12023865 C A DKK3 Silent p.V111V 0.15 TCGA-49-AAR4-01 11 122720892 122720892 G T CRTAM Missense_Mutation p.G55W 0.07 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 11 123476122 123476122 T G GRAMD1B Missense_Mutation p.L277R 0.10 tolerated(0.2) possibly_damaging(0.653) TCGA-49-AAR4-01 11 123847664 123847664 G T OR10S1 Silent p.A245A 0.11 TCGA-49-AAR4-01 11 124120643 124120643 C T OR8G1 Missense_Mutation p.S74F 0.11 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-49-AAR4-01 11 125887111 125887111 T A CDON Missense_Mutation p.N267I 0.12 tolerated(0.14) benign(0.094) TCGA-49-AAR4-01 11 128839937 128839937 C T ARHGAP32 Missense_Mutation p.R1710H 0.09 tolerated(0.12) probably_damaging(0.996) TCGA-49-AAR4-01 11 134010580 134010580 T A JAM3 Missense_Mutation p.D57E 0.12 tolerated(0.41) benign(0.02) TCGA-49-AAR4-01 11 16847704 16847704 C T PLEKHA7 Missense_Mutation p.E436K 0.04 deleterious(0) possibly_damaging(0.887) TCGA-49-AAR4-01 11 17482041 17482041 C A ABCC8 Missense_Mutation p.Q335H 0.14 tolerated(0.08) possibly_damaging(0.477) TCGA-49-AAR4-01 11 18195320 18195320 T C MRGPRX4 Missense_Mutation p.C173R 0.07 deleterious(0) possibly_damaging(0.835) TCGA-49-AAR4-01 11 20089906 20089906 G A NAV2 Missense_Mutation p.E1705K 0.07 deleterious(0) probably_damaging(0.993) TCGA-49-AAR4-01 11 20113833 20113833 C G NAV2 Missense_Mutation p.Q1971E 0.07 tolerated(0.13) probably_damaging(0.974) TCGA-49-AAR4-01 11 249023 249023 G T PSMD13 Missense_Mutation p.R249L 0.08 tolerated(0.05) benign(0.017) TCGA-49-AAR4-01 11 26582641 26582641 C T MUC15 Missense_Mutation p.D353N 0.16 tolerated(0.06) possibly_damaging(0.908) TCGA-49-AAR4-01 11 30516850 30516850 C A MPPED2 Missense_Mutation p.A177S 0.10 tolerated(1) benign(0.068) TCGA-49-AAR4-01 11 3129166 3129166 C A OSBPL5 Missense_Mutation p.W234L 0.17 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 11 32955602 32955602 C T QSER1 Missense_Mutation p.P804L 0.07 tolerated(0.05) benign(0.069) TCGA-49-AAR4-01 11 4133267 4133267 G C RRM1 Missense_Mutation p.G209R 0.08 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-49-AAR4-01 11 45671492 45671492 C T CHST1 Missense_Mutation p.V328M 0.08 deleterious(0) probably_damaging(0.991) TCGA-49-AAR4-01 11 47333350 47333350 A T MADD Missense_Mutation p.Y1409F 0.11 deleterious(0.02) benign(0.005) TCGA-49-AAR4-01 11 48346678 48346678 C A OR4C3 Silent p.V62V 0.07 TCGA-49-AAR4-01 11 4904067 4904067 G T OR51T1 Missense_Mutation p.G340V 0.07 deleterious(0.03) benign(0.387) TCGA-49-AAR4-01 11 49974424 49974424 C A OR4C13 Silent p.G150G 0.09 TCGA-49-AAR4-01 11 533899 533899 A T HRAS Missense_Mutation p.L53M 0.08 deleterious(0) probably_damaging(0.997) TCGA-49-AAR4-01 11 55136133 55136133 G T OR4A15 Missense_Mutation p.L258F 0.15 tolerated_low_confidence(0.23) benign(0.091) TCGA-49-AAR4-01 11 55136204 55136204 G T OR4A15 Missense_Mutation p.C282F 0.05 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-49-AAR4-01 11 55136361 55136361 A C OR4A15 Silent p.V334V 0.11 TCGA-49-AAR4-01 11 55340424 55340424 C A OR4C16 Missense_Mutation p.T274K 0.08 deleterious(0) possibly_damaging(0.752) TCGA-49-AAR4-01 11 55418911 55418911 G A OR4S2 Missense_Mutation p.D178N 0.09 deleterious(0.01) probably_damaging(0.94) TCGA-49-AAR4-01 11 55433289 55433289 A G OR4C6 Missense_Mutation p.Y216C 0.15 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-49-AAR4-01 11 55541283 55541283 C A OR5D13 Missense_Mutation p.R124S 0.11 deleterious(0) possibly_damaging(0.575) TCGA-49-AAR4-01 11 55860809 55860809 T A OR8I2 Missense_Mutation p.V9D 0.08 deleterious(0) benign(0.425) TCGA-49-AAR4-01 11 55873437 55873437 A G OR8H2 Missense_Mutation p.R307G 0.05 deleterious(0.04) benign(0.045) TCGA-49-AAR4-01 11 56086463 56086463 G T OR8K3 Missense_Mutation p.R227S 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.651) TCGA-49-AAR4-01 11 56184971 56184971 C A OR5R1 Silent p.V246V 0.11 TCGA-49-AAR4-01 11 56230083 56230083 G T OR5M9 Silent p.S265S 0.14 TCGA-49-AAR4-01 11 56431313 56431313 C A OR5AR1 Missense_Mutation p.T51K 0.08 tolerated(0.08) benign(0.033) TCGA-49-AAR4-01 11 57381961 57381961 C G SERPING1 Silent p.V470V 0.08 TCGA-49-AAR4-01 11 59224832 59224832 G T OR4D6 Silent p.V133V 0.06 TCGA-49-AAR4-01 11 59282889 59282889 C T OR4D9 Silent p.F168F 0.06 TCGA-49-AAR4-01 11 60183710 60183710 T C MS4A14 Silent p.H456H 0.09 TCGA-49-AAR4-01 11 64108381 64108381 C - CCDC88B Frame_Shift_Del p.S72Afs*23 0.10 TCGA-49-AAR4-01 11 64416314 64416314 G A NRXN2 Missense_Mutation p.R1059W 0.11 deleterious(0) probably_damaging(0.999) TCGA-49-AAR4-01 11 64416315 64416315 G A NRXN2 Silent p.S1058S 0.11 TCGA-49-AAR4-01 11 65793735 65793735 G T CATSPER1 Missense_Mutation p.A39D 0.10 tolerated(0.07) benign(0.08) TCGA-49-AAR4-01 11 65829228 65829228 G - SF3B2 Frame_Shift_Del p.M619Cfs*3 0.10 TCGA-49-AAR4-01 11 66331402 66331402 C A CTSF 3'UTR 0.29 TCGA-49-AAR4-01 11 6637688 6637688 G A TPP1 Silent p.L311L 0.21 TCGA-49-AAR4-01 11 66633712 66633712 C A PC Silent p.R377R 0.17 TCGA-49-AAR4-01 11 6703540 6703540 G T MRPL17 Silent p.R113R 0.07 TCGA-49-AAR4-01 11 7059951 7059951 C A NLRP14 Missense_Mutation p.T45K 0.08 deleterious(0) benign(0.06) TCGA-49-AAR4-01 11 75852149 75852149 G T UVRAG Missense_Mutation p.G598C 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-49-AAR4-01 11 7818189 7818189 C A OR5P2 Missense_Mutation p.A101S 0.14 tolerated(0.06) benign(0.022) TCGA-49-AAR4-01 11 7982190 7982190 G T NLRP10 Nonsense_Mutation p.Y323* 0.07 TCGA-49-AAR4-01 11 7984784 7984785 - A NLRP10 Frame_Shift_Ins p.V87Cfs*11 0.10 TCGA-49-AAR4-01 11 8752590 8752590 G A ST5 Missense_Mutation p.P83S 0.08 tolerated_low_confidence(0.58) benign(0.001) TCGA-49-AAR4-01 11 92624067 92624067 A T FAT3 Missense_Mutation p.S4520C 0.11 benign(0.155) TCGA-49-AAR4-01 11 93471602 93471602 C T TAF1D Silent p.E44E 0.08 TCGA-49-AAR4-01 12 101520674 101520674 A G ANO4 Missense_Mutation p.I863M 0.11 deleterious(0.02) probably_damaging(0.978) TCGA-49-AAR4-01 12 10217380 10217380 G A CLEC9A Nonsense_Mutation p.W174* 0.06 TCGA-49-AAR4-01 12 103699825 103699825 C A C12orf42 Missense_Mutation p.E186D 0.07 deleterious(0.01) benign(0.395) TCGA-49-AAR4-01 12 108589882 108589882 C A WSCD2 Silent p.P91P 0.12 TCGA-49-AAR4-01 12 11286108 11286108 T C TAS2R30 Missense_Mutation p.I246V 0.11 tolerated(0.23) benign(0.042) TCGA-49-AAR4-01 12 117768188 117768188 G T NOS1 Silent p.A229A 0.14 TCGA-49-AAR4-01 12 120270596 120270596 C A CIT Silent p.A244A 0.11 TCGA-49-AAR4-01 12 120565625 120565625 C A GCN1L1 3'UTR 0.06 TCGA-49-AAR4-01 12 124848312 124848312 C A NCOR2 Silent p.P947P 0.09 TCGA-49-AAR4-01 12 124856797 124856797 C T NCOR2 Missense_Mutation p.E860K 0.09 benign(0.415) TCGA-49-AAR4-01 12 126139133 126139133 C G TMEM132B Silent p.G1038G 0.14 TCGA-49-AAR4-01 12 128899664 128899664 G T TMEM132C Missense_Mutation p.W158L 0.21 deleterious(0) possibly_damaging(0.834) TCGA-49-AAR4-01 12 130649032 130649032 G A FZD10 Silent p.G515G 0.12 TCGA-49-AAR4-01 12 132397762 132397762 G T ULK1 Silent p.A372A 0.17 TCGA-49-AAR4-01 12 13717395 13717395 C T GRIN2B Missense_Mutation p.R926Q 0.06 tolerated(0.55) possibly_damaging(0.753) TCGA-49-AAR4-01 12 18890303 18890303 C A PLCZ1 Translation_Start_Site p.M1? 0.12 tolerated_low_confidence(0.25) possibly_damaging(0.827) TCGA-49-AAR4-01 12 19518935 19518935 G A PLEKHA5 Missense_Mutation p.E1216K 0.08 tolerated(0.16) benign(0.014) TCGA-49-AAR4-01 12 21958176 21958176 C T ABCC9 Intron 0.07 TCGA-49-AAR4-01 12 2706602 2706602 G A CACNA1C Splice_Site p.X952_splice 0.08 TCGA-49-AAR4-01 12 2933024 2933024 G T ITFG2 Missense_Mutation p.Q385H 0.07 tolerated(0.07) benign(0.396) TCGA-49-AAR4-01 12 432852 432852 G C KDM5A Silent p.L688L 0.10 TCGA-49-AAR4-01 12 4920014 4920014 G A KCNA6 Silent p.L269L 0.08 TCGA-49-AAR4-01 12 52963715 52963715 G T KRT74 Silent p.T354T 0.09 TCGA-49-AAR4-01 12 53663291 53663291 C T ESPL1 Missense_Mutation p.H189Y 0.06 tolerated(0.68) benign(0.006) TCGA-49-AAR4-01 12 56720128 56720128 G A PAN2 Missense_Mutation p.A443V 0.17 deleterious(0) possibly_damaging(0.802) TCGA-49-AAR4-01 12 58014231 58014231 C A SLC26A10 Silent p.S76S 0.12 TCGA-49-AAR4-01 12 66990659 66990659 C A GRIP1 Missense_Mutation p.G35V 0.09 tolerated(0.51) benign(0.005) TCGA-49-AAR4-01 12 6707228 6707228 T A CHD4 Missense_Mutation p.Q575L 0.05 tolerated(0.24) possibly_damaging(0.728) TCGA-49-AAR4-01 12 8276531 8276531 A T CLEC4A Silent p.S19S 0.09 TCGA-49-AAR4-01 13 29599343 29599343 G T MTUS2 Nonsense_Mutation p.E180* 0.11 TCGA-49-AAR4-01 13 31495840 31495840 T A MEDAG Missense_Mutation p.V215E 0.19 deleterious(0.01) probably_damaging(0.991) TCGA-49-AAR4-01 13 45975247 45975247 C G SLC25A30 Silent p.L195L 0.08 TCGA-49-AAR4-01 13 58208219 58208219 C T PCDH17 Silent p.P513P 0.09 TCGA-49-AAR4-01 13 77835370 77835370 T A MYCBP2 Missense_Mutation p.L558F 0.06 probably_damaging(0.99) TCGA-49-AAR4-01 13 86369931 86369931 G T SLITRK6 Missense_Mutation p.P238Q 0.09 tolerated(0.29) possibly_damaging(0.764) TCGA-49-AAR4-01 13 86370232 86370232 G T SLITRK6 Missense_Mutation p.L138M 0.13 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 13 88330291 88330291 G T SLITRK5 Missense_Mutation p.S883I 0.06 tolerated(0.23) benign(0.05) TCGA-49-AAR4-01 14 101507170 101507170 G T MIR376A1 RNA 0.12 TCGA-49-AAR4-01 14 103174881 103174881 A G RCOR1 Missense_Mutation p.D247G 0.14 deleterious(0) probably_damaging(0.998) TCGA-49-AAR4-01 14 103806114 103806114 G A EIF5 Missense_Mutation p.E349K 0.09 tolerated(0.41) benign(0.009) TCGA-49-AAR4-01 14 105409647 105409647 G C AHNAK2 Silent p.L4047L 0.04 TCGA-49-AAR4-01 14 106494384 106494384 G T IGHV2-5 Silent p.T36T 0.21 TCGA-49-AAR4-01 14 20216222 20216222 C A OR4Q3 Missense_Mutation p.F212L 0.09 deleterious(0) probably_damaging(0.994) TCGA-49-AAR4-01 14 20344920 20344920 C A OR4K2 Missense_Mutation p.T165K 0.08 tolerated(0.2) benign(0.342) TCGA-49-AAR4-01 14 20528750 20528750 C T OR4L1 Missense_Mutation p.L183F 0.15 deleterious(0.02) possibly_damaging(0.776) TCGA-49-AAR4-01 14 20612237 20612237 C T OR4N5 Missense_Mutation p.L115F 0.08 deleterious(0) probably_damaging(0.999) TCGA-49-AAR4-01 14 21109673 21109673 G T OR6S1 Missense_Mutation p.P60T 0.17 deleterious(0) probably_damaging(0.998) TCGA-49-AAR4-01 14 22600992 22600992 A T TRAV8-7 Missense_Mutation p.R113W 0.18 deleterious_low_confidence(0) possibly_damaging(0.795) TCGA-49-AAR4-01 14 24706522 24706522 G A GMPR2 Missense_Mutation p.D225N 0.08 deleterious(0.03) probably_damaging(0.982) TCGA-49-AAR4-01 14 24878027 24878027 G T NYNRIN Missense_Mutation p.V343L 0.28 tolerated_low_confidence(0.12) benign(0.005) TCGA-49-AAR4-01 14 30107930 30107930 C A PRKD1 Missense_Mutation p.G293W 0.12 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 14 32560737 32560737 G T ARHGAP5 Missense_Mutation p.A288S 0.10 tolerated(0.14) benign(0.146) TCGA-49-AAR4-01 14 33291219 33291219 A G AKAP6 Silent p.P1400P 0.12 TCGA-49-AAR4-01 14 55604782 55604782 G T LGALS3 Missense_Mutation p.G13V 0.21 deleterious(0) unknown(0) TCGA-49-AAR4-01 14 68023997 68023997 G T PLEKHH1 Missense_Mutation p.M67I 0.20 deleterious(0) possibly_damaging(0.714) TCGA-49-AAR4-01 14 69520607 69520607 C T DCAF5 Silent p.E932E 0.06 TCGA-49-AAR4-01 14 69847224 69847224 C A ERH 3'UTR 0.14 TCGA-49-AAR4-01 14 70712934 70712934 G T ADAM21P1 RNA 0.13 TCGA-49-AAR4-01 14 81745059 81745059 T C STON2 Missense_Mutation p.D199G 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-49-AAR4-01 14 88651870 88651870 C G KCNK10 3'UTR 0.11 TCGA-49-AAR4-01 14 94053013 94053013 A T UNC79 Missense_Mutation p.I782F 0.12 tolerated(0.1) possibly_damaging(0.558) TCGA-49-AAR4-01 14 94847306 94847306 G - SERPINA1 Frame_Shift_Del p.A274Pfs*50 0.14 TCGA-49-AAR4-01 14 99641781 99641781 G T BCL11B Nonsense_Mutation p.C464* 0.23 TCGA-49-AAR4-01 15 22368724 22368724 G T OR4M2 Missense_Mutation p.S50I 0.03 tolerated(0.72) benign(0.019) TCGA-49-AAR4-01 15 22383235 22383235 A T OR4N4 Missense_Mutation p.I255F 0.05 deleterious(0) probably_damaging(0.968) TCGA-49-AAR4-01 15 24923095 24923095 C A NPAP1 Missense_Mutation p.P694H 0.09 tolerated(0.46) benign(0.015) TCGA-49-AAR4-01 15 25326497 25326497 A G SNORD116-15 RNA 0.11 TCGA-49-AAR4-01 15 25419981 25419981 G C SNORD115-3 5'Flank 0.11 TCGA-49-AAR4-01 15 25460721 25460721 G A SNORD115-25 RNA 0.10 TCGA-49-AAR4-01 15 32928108 32928108 C T ARHGAP11A Missense_Mutation p.P492L 0.09 tolerated(0.18) benign(0.002) TCGA-49-AAR4-01 15 34023737 34023737 C A RYR3 Silent p.L2422L 0.29 TCGA-49-AAR4-01 15 41862857 41862857 C A TYRO3 Silent p.I513I 0.10 TCGA-49-AAR4-01 15 44028261 44028261 C A RNU6-354P 5'Flank 0.12 TCGA-49-AAR4-01 15 44900735 44900735 T C SPG11 Silent p.L1120L 0.08 TCGA-49-AAR4-01 15 51790766 51790766 C A DMXL2 Missense_Mutation p.R1552I 0.14 tolerated(0.05) benign(0.09) TCGA-49-AAR4-01 15 51974766 51974766 G T SCG3 Missense_Mutation p.Q45H 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-49-AAR4-01 15 53905874 53905874 C A WDR72 Missense_Mutation p.C954F 0.08 tolerated(0.69) benign(0.001) TCGA-49-AAR4-01 15 62948261 62948261 G A TLN2 Silent p.V212V 0.07 TCGA-49-AAR4-01 15 62948265 62948265 C A TLN2 Missense_Mutation p.L214M 0.07 deleterious(0) probably_damaging(0.987) TCGA-49-AAR4-01 15 65140842 65140842 G A AC069368.3 Silent p.K21K 0.08 TCGA-49-AAR4-01 15 69672343 69672343 C T PAQR5 Missense_Mutation p.P58L 0.11 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 15 71125108 71125108 C A LARP6 Silent p.V253V 0.11 TCGA-49-AAR4-01 15 74032975 74032975 G T C15orf59 Missense_Mutation p.S55R 0.09 tolerated(0.14) possibly_damaging(0.777) TCGA-49-AAR4-01 15 75014777 75014777 T C CYP1A1 Missense_Mutation p.N221S 0.10 tolerated(1) benign(0.001) TCGA-49-AAR4-01 15 90996126 90996126 C T IQGAP1 Missense_Mutation p.L428F 0.10 tolerated(0.07) benign(0.349) TCGA-49-AAR4-01 15 99512696 99512696 G T PGPEP1L Missense_Mutation p.A110D 0.10 deleterious(0.04) possibly_damaging(0.67) TCGA-49-AAR4-01 16 20548516 20548516 A T ACSM2B 3'UTR 0.08 TCGA-49-AAR4-01 16 20576076 20576076 A G ACSM2B Missense_Mutation p.V31A 0.12 tolerated(1) benign(0.001) TCGA-49-AAR4-01 16 20986663 20986663 C G DNAH3 Missense_Mutation p.M2717I 0.08 tolerated(0.18) benign(0.004) TCGA-49-AAR4-01 16 31105615 31105615 C T VKORC1 Intron 0.06 TCGA-49-AAR4-01 16 3119254 3119254 G C IL32 Silent p.L155L 0.12 TCGA-49-AAR4-01 16 31230784 31230784 C T TRIM72 Nonsense_Mutation p.Q221* 0.19 TCGA-49-AAR4-01 16 53288500 53288500 G C CHD9 Missense_Mutation p.E1338Q 0.05 possibly_damaging(0.848) TCGA-49-AAR4-01 16 55519636 55519636 C G MMP2 Missense_Mutation p.S260C 0.06 deleterious(0) possibly_damaging(0.899) TCGA-49-AAR4-01 16 56920297 56920297 G T SLC12A3 Silent p.T649T 0.13 TCGA-49-AAR4-01 16 56920317 56920317 C A SLC12A3 Missense_Mutation p.P656Q 0.16 deleterious(0) probably_damaging(0.998) TCGA-49-AAR4-01 16 64981697 64981697 C T CDH11 Missense_Mutation p.A734T 0.08 deleterious(0.04) probably_damaging(0.999) TCGA-49-AAR4-01 16 67877219 67877219 G T THAP11 Missense_Mutation p.E254D 0.07 deleterious(0.02) benign(0.341) TCGA-49-AAR4-01 16 68941387 68941387 C A TANGO6 Missense_Mutation p.S570Y 0.09 tolerated(0.17) possibly_damaging(0.54) TCGA-49-AAR4-01 16 68941412 68941412 C T TANGO6 Silent p.L578L 0.15 TCGA-49-AAR4-01 16 69687291 69687291 C T NFAT5 Missense_Mutation p.S322L 0.13 probably_damaging(0.999) TCGA-49-AAR4-01 16 75147695 75147695 G C LDHD Silent p.L324L 0.08 TCGA-49-AAR4-01 16 77228387 77228387 G T MON1B Missense_Mutation p.A211S 0.17 tolerated(0.11) possibly_damaging(0.474) TCGA-49-AAR4-01 16 83378587 83378587 C A CDH13 Missense_Mutation p.H300N 0.08 tolerated(0.2) possibly_damaging(0.876) TCGA-49-AAR4-01 16 86575734 86575734 C T MTHFSD Silent p.P176P 0.15 TCGA-49-AAR4-01 16 86575735 86575735 G A MTHFSD Missense_Mutation p.P176L 0.15 tolerated(0.32) benign(0.077) TCGA-49-AAR4-01 16 9857072 9857072 C T GRIN2A Silent p.R1443R 0.07 TCGA-49-AAR4-01 17 10263350 10263350 C A MYH13 Missense_Mutation p.R191L 0.10 deleterious(0.03) possibly_damaging(0.906) TCGA-49-AAR4-01 17 11648187 11648187 C A DNAH9 Missense_Mutation p.P2062H 0.13 possibly_damaging(0.829) TCGA-49-AAR4-01 17 17720330 17720330 G A SREBF1 Missense_Mutation p.S606L 0.08 deleterious(0) possibly_damaging(0.897) TCGA-49-AAR4-01 17 1840788 1840788 T C RTN4RL1 Missense_Mutation p.N110D 0.17 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 17 19316621 19316621 G T RNF112 Missense_Mutation p.G206V 0.22 tolerated(0.11) possibly_damaging(0.624) TCGA-49-AAR4-01 17 20805951 20805951 C A RP11-344E13.3 RNA 0.13 TCGA-49-AAR4-01 17 21731452 21731452 A T UBBP4 Missense_Mutation p.E176V 0.17 deleterious(0.03) possibly_damaging(0.619) TCGA-49-AAR4-01 17 30361940 30361940 G T LRRC37B Missense_Mutation p.R663L 0.08 deleterious(0.01) possibly_damaging(0.726) TCGA-49-AAR4-01 17 35733024 35733024 C A C17orf78 5'UTR 0.07 TCGA-49-AAR4-01 17 38080412 38080412 C T ORMDL3 Silent p.R15R 0.21 TCGA-49-AAR4-01 17 39333986 39333986 G A KRTAP4-2 3'UTR 0.19 TCGA-49-AAR4-01 17 39577836 39577836 C T KRT37 Missense_Mutation p.D342N 0.10 tolerated(0.26) benign(0.132) TCGA-49-AAR4-01 17 41738714 41738714 T A MEOX1 Silent p.S63S 0.10 TCGA-49-AAR4-01 17 41955085 41955085 G T MPP2 3'UTR 0.21 TCGA-49-AAR4-01 17 41958125 41958125 C A MPP2 Nonsense_Mutation p.G362* 0.18 TCGA-49-AAR4-01 17 43011665 43011665 C T KIF18B Missense_Mutation p.G274E 0.17 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 17 46628203 46628203 G A HOXB3 Silent p.G263G 0.18 TCGA-49-AAR4-01 17 47874267 47874267 G A KAT7 Missense_Mutation p.V107M 0.13 tolerated_low_confidence(0.23) benign(0.145) TCGA-49-AAR4-01 17 48263693 48263693 C G COL1A1 Missense_Mutation p.M1330I 0.06 unknown(0) TCGA-49-AAR4-01 17 5074121 5074121 C A USP6 Missense_Mutation p.Q1289K 0.08 tolerated_low_confidence(0.62) possibly_damaging(0.739) TCGA-49-AAR4-01 17 51900870 51900870 A T KIF2B Missense_Mutation p.Q159L 0.12 deleterious(0.04) possibly_damaging(0.776) TCGA-49-AAR4-01 17 53488665 53488665 G A MMD Silent p.I74I 0.08 TCGA-49-AAR4-01 17 5436266 5436266 A G NLRP1 Missense_Mutation p.C1058R 0.31 tolerated(0.39) benign(0.001) TCGA-49-AAR4-01 17 56355466 56355466 C A MPO Missense_Mutation p.C309F 0.10 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 17 59821926 59821926 C G BRIP1 Missense_Mutation p.W708C 0.11 deleterious(0) probably_damaging(0.998) TCGA-49-AAR4-01 17 61972400 61972400 C T CSH1 Silent p.E212E 0.10 TCGA-49-AAR4-01 17 67170860 67170860 C A ABCA10 Missense_Mutation p.G979V 0.15 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 17 6941911 6941911 G A SLC16A13 Missense_Mutation p.D262N 0.16 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 17 71223375 71223375 C T FAM104A Missense_Mutation p.D84N 0.10 deleterious(0) possibly_damaging(0.577) TCGA-49-AAR4-01 17 72537654 72537654 G A CD300C 3'UTR 0.23 TCGA-49-AAR4-01 17 72942792 72942792 C G OTOP3 Missense_Mutation p.T281S 0.12 tolerated(0.08) possibly_damaging(0.779) TCGA-49-AAR4-01 17 74288434 74288434 C A QRICH2 Missense_Mutation p.V626L 0.16 tolerated(0.14) benign(0.014) TCGA-49-AAR4-01 17 74392683 74392683 C T UBE2O Missense_Mutation p.E779K 0.04 tolerated(0.32) probably_damaging(0.98) TCGA-49-AAR4-01 17 7579374 7579374 C A TP53 Missense_Mutation p.G105C 0.15 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 18 13072820 13072820 A T CEP192 Missense_Mutation p.R1805S 0.10 deleterious(0.04) possibly_damaging(0.732) TCGA-49-AAR4-01 18 29055915 29055915 T A DSG3 Missense_Mutation p.C898S 0.12 tolerated(0.5) benign(0.004) TCGA-49-AAR4-01 18 34205579 34205579 C A FHOD3 Silent p.R355R 0.08 TCGA-49-AAR4-01 18 44030707 44030707 G T RNF165 Missense_Mutation p.R254L 0.09 deleterious(0) possibly_damaging(0.454) TCGA-49-AAR4-01 18 47799213 47799213 C T MBD1 Missense_Mutation p.G566E 0.07 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-49-AAR4-01 18 5406796 5406796 C A EPB41L3 Nonsense_Mutation p.E777* 0.15 TCGA-49-AAR4-01 18 54814889 54814889 G T BOD1L2 Missense_Mutation p.V116L 0.10 deleterious(0.03) probably_damaging(0.934) TCGA-49-AAR4-01 18 61390500 61390500 C A SERPINB11 Missense_Mutation p.A349D 0.23 deleterious(0) probably_damaging(0.982) TCGA-49-AAR4-01 18 61471743 61471743 C A SERPINB7 Silent p.A339A 0.11 TCGA-49-AAR4-01 18 63530161 63530161 C A CDH7 Intron 0.15 TCGA-49-AAR4-01 18 66351675 66351675 C G TMX3 Missense_Mutation p.E262Q 0.05 tolerated(0.06) benign(0.34) TCGA-49-AAR4-01 18 7016570 7016570 T A LAMA1 Missense_Mutation p.H970L 0.07 tolerated(0.61) benign(0.008) TCGA-49-AAR4-01 18 8783830 8783830 G T SOGA2 Missense_Mutation p.E240D 0.17 tolerated(0.44) benign(0.334) TCGA-49-AAR4-01 19 15072962 15072962 C G SLC1A6 Missense_Mutation p.A263P 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-49-AAR4-01 19 15082552 15082552 T G SLC1A6 Missense_Mutation p.T114P 0.21 deleterious(0.01) possibly_damaging(0.679) TCGA-49-AAR4-01 19 17758169 17758169 G C UNC13A Missense_Mutation p.A650G 0.27 tolerated(0.69) benign(0.005) TCGA-49-AAR4-01 19 19427341 19427341 G A SUGP1 Silent p.I32I 0.12 TCGA-49-AAR4-01 19 38190584 38190584 C A ZNF607 Missense_Mutation p.A150S 0.17 tolerated(0.12) benign(0.081) TCGA-49-AAR4-01 19 39989623 39989623 C T DLL3 Silent p.S3S 0.22 TCGA-49-AAR4-01 19 41497231 41497231 C T CYP2B6 Silent p.L7L 0.09 TCGA-49-AAR4-01 19 42946985 42946985 C T CXCL17 5'UTR 0.26 TCGA-49-AAR4-01 19 43674220 43674220 T A PSG5 3'UTR 0.21 TCGA-49-AAR4-01 19 44946796 44946796 G C ZNF229 Missense_Mutation p.S15C 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-49-AAR4-01 19 46998405 46998405 C T PNMAL2 Missense_Mutation p.M106I 0.06 deleterious(0) possibly_damaging(0.844) TCGA-49-AAR4-01 19 4704283 4704283 C A DPP9 Nonsense_Mutation p.E154* 0.17 TCGA-49-AAR4-01 19 49649230 49649230 G A PPFIA3 Missense_Mutation p.E926K 0.07 deleterious(0.03) possibly_damaging(0.534) TCGA-49-AAR4-01 19 51509826 51509826 G A KLK9 Silent p.P118P 0.19 TCGA-49-AAR4-01 19 52149130 52149130 G T SIGLEC14 Missense_Mutation p.P202H 0.14 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 19 53754807 53754807 C T ZNF677 5'UTR 0.27 TCGA-49-AAR4-01 19 54137871 54137871 C T DPRX Missense_Mutation p.P39S 0.19 tolerated(0.06) possibly_damaging(0.871) TCGA-49-AAR4-01 19 54313722 54313722 G A NLRP12 Silent p.L397L 0.20 TCGA-49-AAR4-01 19 55693024 55693024 G T PTPRH 3'UTR 0.23 TCGA-49-AAR4-01 19 55776691 55776691 G A HSPBP1 Silent p.L320L 0.06 TCGA-49-AAR4-01 19 56370266 56370266 C G NLRP4 Missense_Mutation p.L503V 0.06 tolerated(0.2) benign(0.047) TCGA-49-AAR4-01 19 56459501 56459501 C A NLRP8 Missense_Mutation p.T78K 0.20 tolerated(1) benign(0.037) TCGA-49-AAR4-01 19 56466695 56466695 C A NLRP8 Missense_Mutation p.T424N 0.21 deleterious(0) probably_damaging(0.984) TCGA-49-AAR4-01 19 5789346 5789346 C - DUS3L Frame_Shift_Del p.E258Kfs*28 0.23 TCGA-49-AAR4-01 19 7622129 7622129 G T PNPLA6 Missense_Mutation p.G1129V 0.12 deleterious(0) probably_damaging(0.995) TCGA-49-AAR4-01 19 8193975 8193975 C A FBN3 Missense_Mutation p.G745C 0.17 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 19 831796 831796 C A AZU1 Silent p.G225G 0.24 TCGA-49-AAR4-01 19 8953356 8953356 T A MBD3L1 Translation_Start_Site p.M1? 0.25 deleterious(0) probably_damaging(0.991) TCGA-49-AAR4-01 19 8953357 8953357 G T MBD3L1 Translation_Start_Site p.M1? 0.25 deleterious(0.01) probably_damaging(0.986) TCGA-49-AAR4-01 19 9049262 9049262 G A MUC16 Missense_Mutation p.S10790L 0.08 benign(0.158) TCGA-49-AAR4-01 19 9056678 9056678 T C MUC16 Silent p.T10256T 0.13 TCGA-49-AAR4-01 19 9083005 9083005 G T MUC16 Missense_Mutation p.P2937Q 0.19 unknown(0) TCGA-49-AAR4-01 19 9225764 9225764 G T OR7G1 Missense_Mutation p.L226M 0.14 tolerated(0.07) possibly_damaging(0.658) TCGA-49-AAR4-01 19 9577837 9577837 C A ZNF560 Nonsense_Mutation p.G596* 0.14 TCGA-49-AAR4-01 1 109779109 109779109 C T SARS Missense_Mutation p.T399M 0.11 deleterious(0.01) possibly_damaging(0.67) TCGA-49-AAR4-01 1 117602946 117602946 T C TTF2 5'UTR 0.09 TCGA-49-AAR4-01 1 12379571 12379571 A G VPS13D Missense_Mutation p.I2478V 0.09 benign(0) TCGA-49-AAR4-01 1 146399566 146399566 G A NBPF12 Missense_Mutation p.D169N 0.08 possibly_damaging(0.737) TCGA-49-AAR4-01 1 152191230 152191230 G T HRNR Missense_Mutation p.Q959K 0.05 unknown(0) TCGA-49-AAR4-01 1 152280349 152280349 G T FLG Missense_Mutation p.A2338E 0.09 possibly_damaging(0.849) TCGA-49-AAR4-01 1 152284389 152284389 G T FLG Missense_Mutation p.D991E 0.09 possibly_damaging(0.562) TCGA-49-AAR4-01 1 152286265 152286265 C T FLG Missense_Mutation p.R366H 0.08 benign(0.049) TCGA-49-AAR4-01 1 152882427 152882427 C A IVL Missense_Mutation p.P52T 0.11 deleterious_low_confidence(0) unknown(0) TCGA-49-AAR4-01 1 152882428 152882428 C A IVL Missense_Mutation p.P52Q 0.11 deleterious_low_confidence(0.03) unknown(0) TCGA-49-AAR4-01 1 155340665 155340665 C T ASH1L Missense_Mutation p.E2148K 0.05 tolerated_low_confidence(0.08) possibly_damaging(0.879) TCGA-49-AAR4-01 1 155874530 155874530 C A RIT1 Missense_Mutation p.A94S 0.11 deleterious(0) probably_damaging(0.977) TCGA-49-AAR4-01 1 156347874 156347874 C A RHBG Silent p.A156A 0.09 TCGA-49-AAR4-01 1 156812302 156812302 T A INSRR Splice_Site p.X1043_splice 0.21 TCGA-49-AAR4-01 1 158224912 158224912 G C CD1A Missense_Mutation p.A33P 0.13 deleterious(0) possibly_damaging(0.566) TCGA-49-AAR4-01 1 158435942 158435942 G T OR10K1 Silent p.L197L 0.07 TCGA-49-AAR4-01 1 158435943 158435943 G T OR10K1 Missense_Mutation p.V198F 0.07 tolerated(0.05) possibly_damaging(0.865) TCGA-49-AAR4-01 1 158596770 158596770 C T SPTA1 Missense_Mutation p.E1898K 0.11 tolerated(0.18) possibly_damaging(0.552) TCGA-49-AAR4-01 1 158623196 158623196 G T SPTA1 Missense_Mutation p.A1019D 0.10 tolerated(0.14) possibly_damaging(0.762) TCGA-49-AAR4-01 1 160766005 160766005 G A LY9 Missense_Mutation p.D10N 0.06 tolerated(0.09) probably_damaging(0.942) TCGA-49-AAR4-01 1 167368538 167368538 C T POU2F1 Missense_Mutation p.P462L 0.10 deleterious(0) unknown(0) TCGA-49-AAR4-01 1 167852732 167852732 G C ADCY10 Missense_Mutation p.I321M 0.07 deleterious(0) probably_damaging(0.998) TCGA-49-AAR4-01 1 172017833 172017833 G T DNM3 Missense_Mutation p.K426N 0.14 deleterious(0.03) possibly_damaging(0.497) TCGA-49-AAR4-01 1 175097752 175097752 C T TNN Missense_Mutation p.P1067L 0.08 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 1 176564583 176564583 C A PAPPA2 Missense_Mutation p.Q615K 0.12 tolerated(0.32) benign(0.049) TCGA-49-AAR4-01 1 178412297 178412297 G T RASAL2 Missense_Mutation p.S472I 0.08 deleterious(0) probably_damaging(0.995) TCGA-49-AAR4-01 1 178490499 178490499 G T TEX35 Intron 0.11 TCGA-49-AAR4-01 1 179603632 179603632 C A TDRD5 Silent p.S389S 0.09 TCGA-49-AAR4-01 1 179853887 179853887 G T TOR1AIP1 Missense_Mutation p.S179I 0.10 tolerated_low_confidence(0.05) benign(0.12) TCGA-49-AAR4-01 1 180166556 180166556 A T QSOX1 3'UTR 0.13 TCGA-49-AAR4-01 1 181727143 181727143 A C CACNA1E Silent p.R1464R 0.12 TCGA-49-AAR4-01 1 181732619 181732619 G A CACNA1E Silent p.Q1589Q 0.09 TCGA-49-AAR4-01 1 185153998 185153998 A G SWT1 Missense_Mutation p.D455G 0.19 tolerated(0.07) probably_damaging(0.938) TCGA-49-AAR4-01 1 186010181 186010181 G T HMCN1 Missense_Mutation p.A2073S 0.09 probably_damaging(0.996) TCGA-49-AAR4-01 1 186092353 186092353 G C HMCN1 Splice_Site p.X4167_splice 0.11 TCGA-49-AAR4-01 1 186099638 186099638 G T HMCN1 Splice_Site p.X4347_splice 0.13 TCGA-49-AAR4-01 1 186283851 186283851 T C TPR Missense_Mutation p.S2316G 0.06 possibly_damaging(0.481) TCGA-49-AAR4-01 1 186908220 186908220 T A PLA2G4A Missense_Mutation p.V259D 0.08 deleterious(0) probably_damaging(0.995) TCGA-49-AAR4-01 1 186957570 186957570 C G PLA2G4A Missense_Mutation p.S727C 0.07 deleterious(0.03) probably_damaging(0.96) TCGA-49-AAR4-01 1 19183852 19183852 G T TAS1R2 Missense_Mutation p.N152K 0.08 tolerated(0.08) benign(0.076) TCGA-49-AAR4-01 1 196684736 196684736 C T CFH Silent p.I511I 0.12 TCGA-49-AAR4-01 1 197073789 197073789 C A ASPM Missense_Mutation p.R1531L 0.12 deleterious(0) possibly_damaging(0.724) TCGA-49-AAR4-01 1 201869657 201869657 G T LMOD1 Silent p.R162R 0.10 TCGA-49-AAR4-01 1 205779549 205779549 C T SLC41A1 Silent p.P7P 0.14 TCGA-49-AAR4-01 1 212002481 212002481 C G LPGAT1 Missense_Mutation p.R53P 0.08 tolerated(0.13) benign(0.066) TCGA-49-AAR4-01 1 215793411 215793411 G T KCTD3 Missense_Mutation p.Q633H 0.18 deleterious_low_confidence(0.02) probably_damaging(0.993) TCGA-49-AAR4-01 1 215824125 215824125 C A USH2A Missense_Mutation p.A4718S 0.13 probably_damaging(0.982) TCGA-49-AAR4-01 1 216138805 216138805 A T USH2A Missense_Mutation p.L2325Q 0.14 benign(0.115) TCGA-49-AAR4-01 1 22079501 22079501 T A USP48 Missense_Mutation p.D175V 0.10 deleterious(0) possibly_damaging(0.836) TCGA-49-AAR4-01 1 220826508 220826508 G T MARK1 Missense_Mutation p.R601L 0.20 deleterious(0.01) benign(0.168) TCGA-49-AAR4-01 1 221876007 221876007 T A DUSP10 Missense_Mutation p.Q399L 0.16 deleterious(0.03) possibly_damaging(0.727) TCGA-49-AAR4-01 1 22405008 22405008 G C CDC42 Missense_Mutation p.A13P 0.08 deleterious(0) probably_damaging(0.967) TCGA-49-AAR4-01 1 227075847 227075847 A G PSEN2 Missense_Mutation p.Y185C 0.11 deleterious(0.02) benign(0.012) TCGA-49-AAR4-01 1 228566440 228566440 C T OBSCN Missense_Mutation p.R8906C 0.21 probably_damaging(0.992) TCGA-49-AAR4-01 1 230822787 230822787 G T COG2 Missense_Mutation p.G496V 0.08 deleterious(0.04) benign(0.017) TCGA-49-AAR4-01 1 230838904 230838904 G T AGT Missense_Mutation p.P481T 0.11 deleterious(0) probably_damaging(0.999) TCGA-49-AAR4-01 1 236212123 236212123 G T NID1 Missense_Mutation p.T131N 0.17 deleterious(0) benign(0.141) TCGA-49-AAR4-01 1 236729262 236729262 C T HEATR1 Missense_Mutation p.M1464I 0.12 tolerated(0.65) benign(0.004) TCGA-49-AAR4-01 1 236917259 236917259 G T ACTN2 Missense_Mutation p.V618L 0.13 deleterious(0.04) benign(0.323) TCGA-49-AAR4-01 1 237817650 237817650 C T RYR2 Missense_Mutation p.S2634L 0.12 probably_damaging(0.998) TCGA-49-AAR4-01 1 237993910 237993910 G C RYR2 Missense_Mutation p.E4912D 0.08 possibly_damaging(0.636) TCGA-49-AAR4-01 1 247655380 247655380 G T OR2W5 RNA 0.12 TCGA-49-AAR4-01 1 247751866 247751866 C G OR2G2 Missense_Mutation p.L69V 0.12 deleterious(0) probably_damaging(0.962) TCGA-49-AAR4-01 1 247769247 247769247 G T OR2G3 Missense_Mutation p.L120F 0.16 tolerated(0.65) benign(0.002) TCGA-49-AAR4-01 1 247836183 247836183 G C OR13G1 Missense_Mutation p.T54R 0.09 deleterious(0.03) benign(0.001) TCGA-49-AAR4-01 1 247978897 247978897 C A OR14A16 Missense_Mutation p.M45I 0.15 tolerated(0.37) benign(0) TCGA-49-AAR4-01 1 248309091 248309091 C A OR2M5 Silent p.I214I 0.06 TCGA-49-AAR4-01 1 26695060 26695060 C T ZNF683 Translation_Start_Site p.M1? 0.09 tolerated_low_confidence(0.05) benign(0.039) TCGA-49-AAR4-01 1 35370246 35370246 G A DLGAP3 Missense_Mutation p.R247C 0.13 deleterious(0) probably_damaging(0.99) TCGA-49-AAR4-01 1 35863053 35863053 G A ZMYM4 Missense_Mutation p.E1036K 0.13 deleterious(0.01) benign(0.116) TCGA-49-AAR4-01 1 40747027 40747027 C T ZMPSTE24 Missense_Mutation p.S261F 0.09 deleterious(0) probably_damaging(0.967) TCGA-49-AAR4-01 1 41094479 41094479 C A RIMS3 Intron 0.15 TCGA-49-AAR4-01 1 46876099 46876099 G T FAAH Missense_Mutation p.G402V 0.11 deleterious(0.05) probably_damaging(0.994) TCGA-49-AAR4-01 1 47746836 47746836 C T STIL Missense_Mutation p.D432N 0.14 deleterious(0.05) possibly_damaging(0.615) TCGA-49-AAR4-01 1 55070859 55070859 G T ACOT11 Missense_Mutation p.R449S 0.11 deleterious(0.03) probably_damaging(0.996) TCGA-49-AAR4-01 1 55144415 55144415 G T MROH7 Missense_Mutation p.R646L 0.17 tolerated(0.11) possibly_damaging(0.712) TCGA-49-AAR4-01 1 56990009 56990009 G A PPAP2B Missense_Mutation p.S172F 0.09 deleterious(0) possibly_damaging(0.866) TCGA-49-AAR4-01 1 6202483 6202483 G A CHD5 Silent p.L742L 0.14 TCGA-49-AAR4-01 1 62941491 62941491 C G DOCK7 Missense_Mutation p.D1919H 0.06 deleterious(0) probably_damaging(0.987) TCGA-49-AAR4-01 1 67101700 67101700 T A SGIP1 Splice_Site p.X57_splice 0.10 TCGA-49-AAR4-01 1 70339188 70339188 T G LRRC7 Intron 0.08 TCGA-49-AAR4-01 1 70486699 70486699 G T LRRC7 Missense_Mutation p.D440Y 0.12 deleterious(0) probably_damaging(0.997) TCGA-49-AAR4-01 1 75622718 75622718 C A LHX8 Silent p.P317P 0.16 TCGA-49-AAR4-01 1 75805282 75805282 C A SLC44A5 Missense_Mutation p.G29V 0.10 deleterious(0) probably_damaging(0.973) TCGA-49-AAR4-01 1 82432247 82432247 G T LPHN2 Missense_Mutation p.R751L 0.12 deleterious(0) probably_damaging(0.999) TCGA-49-AAR4-01 1 82456281 82456281 A T LPHN2 Missense_Mutation p.T1222S 0.07 tolerated_low_confidence(0.8) benign(0.001) TCGA-49-AAR4-01 1 85486922 85486922 G T MCOLN3 Missense_Mutation p.S453Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-49-AAR4-01 1 86942186 86942186 C T CLCA1 Silent p.Y169Y 0.10 TCGA-49-AAR4-01 1 89652095 89652095 G T GBP4 Missense_Mutation p.A543D 0.10 tolerated(0.52) benign(0.071) TCGA-49-AAR4-01 1 93070903 93070903 C A EVI5 Silent p.V661V 0.14 TCGA-49-AAR4-01 1 99753555 99753555 A - LPPR4 Frame_Shift_Del p.Y86Ffs*54 0.10 TCGA-49-AAR4-01 20 14307714 14307714 C T FLRT3 Missense_Mutation p.E147K 0.06 deleterious(0.01) benign(0.426) TCGA-49-AAR4-01 20 17928274 17928274 G A SNX5 Missense_Mutation p.R312C 0.18 deleterious(0.01) benign(0.077) TCGA-49-AAR4-01 20 20269523 20269523 G T C20orf26 Nonsense_Mutation p.E1023* 0.09 TCGA-49-AAR4-01 20 37177345 37177345 C T RALGAPB Silent p.P972P 0.19 TCGA-49-AAR4-01 20 39831807 39831807 C T ZHX3 Missense_Mutation p.E584K 0.10 deleterious(0.03) benign(0.184) TCGA-49-AAR4-01 20 39831840 39831840 C G ZHX3 Missense_Mutation p.E573Q 0.09 tolerated(0.1) benign(0.421) TCGA-49-AAR4-01 20 42204874 42204874 A G SGK2 Missense_Mutation p.Y295C 0.05 deleterious(0) probably_damaging(0.998) TCGA-49-AAR4-01 20 45702866 45702866 C A EYA2 Missense_Mutation p.P185T 0.14 tolerated(0.2) possibly_damaging(0.69) TCGA-49-AAR4-01 20 54824179 54824179 G T MC3R Nonsense_Mutation p.E94* 0.08 TCGA-49-AAR4-01 20 55212792 55212792 G T TFAP2C Missense_Mutation p.C359F 0.08 deleterious(0) probably_damaging(0.999) TCGA-49-AAR4-01 20 8713935 8713935 G T PLCB1 Missense_Mutation p.G647C 0.06 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 20 8782750 8782750 C T PLCB1 Intron 0.16 TCGA-49-AAR4-01 21 35467839 35467839 C G SLC5A3 Silent p.S114S 0.13 TCGA-49-AAR4-01 21 35469614 35469614 G T SLC5A3 Missense_Mutation p.C706F 0.20 deleterious(0.02) possibly_damaging(0.504) TCGA-49-AAR4-01 21 46057767 46057767 G C KRTAP10-10 Missense_Mutation p.A145P 0.12 tolerated(0.18) probably_damaging(0.939) TCGA-49-AAR4-01 21 46117437 46117437 C T KRTAP10-12 Silent p.P107P 0.10 TCGA-49-AAR4-01 21 46117616 46117616 C A KRTAP10-12 Missense_Mutation p.S167Y 0.13 tolerated(0.08) unknown(0) TCGA-49-AAR4-01 21 47549293 47549293 A T COL6A2 Intron 0.12 TCGA-49-AAR4-01 22 16449700 16449700 C A OR11H1 Missense_Mutation p.E35D 0.05 tolerated(0.34) benign(0.005) TCGA-49-AAR4-01 22 17071759 17071759 G T CCT8L2 3'UTR 0.15 TCGA-49-AAR4-01 22 17073194 17073194 C A CCT8L2 Nonsense_Mutation p.E83* 0.17 TCGA-49-AAR4-01 22 18028979 18028979 T C CECR2 Silent p.S1313S 0.16 TCGA-49-AAR4-01 22 22550497 22550497 G T IGLV6-57 Missense_Mutation p.Q58H 0.21 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-49-AAR4-01 22 26272165 26272165 C A MYO18B Missense_Mutation p.L1364M 0.12 tolerated(0.13) possibly_damaging(0.833) TCGA-49-AAR4-01 22 32587019 32587019 G T RFPL2 Missense_Mutation p.P293T 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-49-AAR4-01 22 33828253 33828253 T A LARGE Splice_Site p.X263_splice 0.17 TCGA-49-AAR4-01 22 36624296 36624296 C G APOL2 Silent p.L56L 0.05 TCGA-49-AAR4-01 22 37325801 37325801 G T CSF2RB Nonsense_Mutation p.G224* 0.12 TCGA-49-AAR4-01 22 40066861 40066861 C T CACNA1I Missense_Mutation p.H1481Y 0.07 deleterious(0.01) benign(0.006) TCGA-49-AAR4-01 22 45312384 45312384 G C PHF21B Missense_Mutation p.P114A 0.09 tolerated_low_confidence(0.05) possibly_damaging(0.708) TCGA-49-AAR4-01 22 46594272 46594272 C G PPARA 5'UTR 0.09 TCGA-49-AAR4-01 2 108477221 108477221 G T RGPD4 Splice_Site p.X587_splice 0.08 TCGA-49-AAR4-01 2 113532799 113532799 G T IL1A Missense_Mutation p.L221I 0.11 tolerated(0.16) benign(0.026) TCGA-49-AAR4-01 2 116538457 116538457 A T DPP10 Missense_Mutation p.T461S 0.10 tolerated(0.07) benign(0.033) TCGA-49-AAR4-01 2 116599830 116599830 A G DPP10 Missense_Mutation p.Y771C 0.13 deleterious(0.04) benign(0.428) TCGA-49-AAR4-01 2 121746689 121746689 G T GLI2 Missense_Mutation p.V1067L 0.09 deleterious(0.04) probably_damaging(0.97) TCGA-49-AAR4-01 2 122004435 122004435 C G TFCP2L1 Missense_Mutation p.E206Q 0.11 tolerated(0.11) probably_damaging(0.996) TCGA-49-AAR4-01 2 130934162 130934162 C T SMPD4 Missense_Mutation p.A41T 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.908) TCGA-49-AAR4-01 2 133538721 133538721 C G NCKAP5 Missense_Mutation p.Q1651H 0.11 tolerated(0.06) probably_damaging(0.959) TCGA-49-AAR4-01 2 141816452 141816452 C A LRP1B Missense_Mutation p.V470F 0.08 benign(0.403) TCGA-49-AAR4-01 2 152132047 152132047 G A NMI Silent p.D195D 0.08 TCGA-49-AAR4-01 2 160206274 160206274 C G BAZ2B Missense_Mutation p.G1603A 0.12 benign(0.003) TCGA-49-AAR4-01 2 162762226 162762226 T G SLC4A10 Missense_Mutation p.V609G 0.17 deleterious(0) probably_damaging(0.999) TCGA-49-AAR4-01 2 164468156 164468156 C A FIGN Silent p.L62L 0.09 TCGA-49-AAR4-01 2 167273314 167273314 C A SCN7A Missense_Mutation p.R1106L 0.20 tolerated(0.06) benign(0.003) TCGA-49-AAR4-01 2 168105010 168105010 C G XIRP2 Missense_Mutation p.P2370A 0.11 possibly_damaging(0.641) TCGA-49-AAR4-01 2 169814573 169814573 A T ABCB11 Missense_Mutation p.S748R 0.20 deleterious(0.01) benign(0.028) TCGA-49-AAR4-01 2 170013947 170013947 C G LRP2 Missense_Mutation p.G3985R 0.11 probably_damaging(0.984) TCGA-49-AAR4-01 2 170366688 170366688 A T KLHL41 Missense_Mutation p.N134Y 0.06 deleterious(0) probably_damaging(0.992) TCGA-49-AAR4-01 2 173339667 173339667 A G ITGA6 Missense_Mutation p.I333V 0.11 tolerated(0.08) possibly_damaging(0.462) TCGA-49-AAR4-01 2 173885396 173885396 A G RAPGEF4 Missense_Mutation p.I736V 0.11 tolerated(0.28) benign(0.003) TCGA-49-AAR4-01 2 175618373 175618373 G T CHRNA1 Nonsense_Mutation p.C237* 0.10 TCGA-49-AAR4-01 2 176981496 176981496 G T HOXD10 5'UTR 0.10 TCGA-49-AAR4-01 2 179434767 179434767 C G TTN Silent p.L25364L 0.12 TCGA-49-AAR4-01 2 179452286 179452286 G T TTN Missense_Mutation p.N21250K 0.13 TCGA-49-AAR4-01 2 179483560 179483560 C G TTN Missense_Mutation p.A15573P 0.10 TCGA-49-AAR4-01 2 179606188 179606188 T A TTN Silent p.A3924A 0.09 TCGA-49-AAR4-01 2 189599303 189599303 A T DIRC1 3'UTR 0.12 TCGA-49-AAR4-01 2 189950498 189950498 C A COL5A2 Missense_Mutation p.G231C 0.24 probably_damaging(1) TCGA-49-AAR4-01 2 198285196 198285196 C A SF3B1 Missense_Mutation p.R124L 0.10 tolerated(0.66) benign(0.002) TCGA-49-AAR4-01 2 207631917 207631917 G T FASTKD2 Missense_Mutation p.S167I 0.11 deleterious(0.01) possibly_damaging(0.894) TCGA-49-AAR4-01 2 210560966 210560966 G T MAP2 Nonsense_Mutation p.E1358* 0.10 TCGA-49-AAR4-01 2 211460281 211460281 G T CPS1 Missense_Mutation p.G451V 0.10 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 2 21241981 21241981 C A APOB Nonsense_Mutation p.E1002* 0.07 TCGA-49-AAR4-01 2 213878558 213878558 C - IKZF2 Frame_Shift_Del p.N272Ifs*30 0.09 TCGA-49-AAR4-01 2 215813776 215813776 C A ABCA12 Missense_Mutation p.R2317I 0.13 deleterious(0) probably_damaging(0.918) TCGA-49-AAR4-01 2 219892364 219892364 G T CCDC108 Intron 0.07 TCGA-49-AAR4-01 2 232373907 232373907 C G LINC00471 RNA 0.07 TCGA-49-AAR4-01 2 241689864 241689864 C T KIF1A Missense_Mutation p.A987T 0.12 deleterious(0.02) possibly_damaging(0.76) TCGA-49-AAR4-01 2 242147041 242147041 G A ANO7 Missense_Mutation p.D399N 0.04 tolerated(0.39) benign(0.005) TCGA-49-AAR4-01 2 31147076 31147076 C T GALNT14 Missense_Mutation p.C435Y 0.09 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 2 31147087 31147087 C A GALNT14 Missense_Mutation p.Q431H 0.10 deleterious(0.02) probably_damaging(0.971) TCGA-49-AAR4-01 2 32117069 32117069 C A MEMO1 Missense_Mutation p.C191F 0.09 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 2 40656753 40656753 G T SLC8A1 Missense_Mutation p.S223Y 0.14 deleterious(0) probably_damaging(0.934) TCGA-49-AAR4-01 2 61415569 61415569 C T USP34 Missense_Mutation p.E3437K 0.07 deleterious_low_confidence(0.04) benign(0.002) TCGA-49-AAR4-01 2 71577302 71577302 A G ZNF638 Silent p.R406R 0.13 TCGA-49-AAR4-01 2 74481804 74481804 C T SLC4A5 Missense_Mutation p.G352E 0.10 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 2 74592202 74592202 C A DCTN1 Nonsense_Mutation p.E1066* 0.12 TCGA-49-AAR4-01 2 74594024 74594024 G A DCTN1 Silent p.L784L 0.12 TCGA-49-AAR4-01 2 88422624 88422624 C A FABP1 Splice_Site p.X112_splice 0.10 TCGA-49-AAR4-01 3 100645184 100645184 G T ABI3BP Missense_Mutation p.P81H 0.14 deleterious(0) possibly_damaging(0.893) TCGA-49-AAR4-01 3 101311551 101311551 G C PCNP Missense_Mutation p.R164P 0.11 deleterious(0) possibly_damaging(0.884) TCGA-49-AAR4-01 3 113955097 113955097 C T ZNF80 3'UTR 0.14 TCGA-49-AAR4-01 3 121200433 121200433 T A POLQ Missense_Mutation p.K2066M 0.10 deleterious(0) probably_damaging(0.999) TCGA-49-AAR4-01 3 130409471 130409471 T A PIK3R4 Silent p.G1042G 0.14 TCGA-49-AAR4-01 3 137822813 137822813 T G DZIP1L Translation_Start_Site p.M1? 0.18 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-49-AAR4-01 3 147128706 147128706 C A ZIC1 Missense_Mutation p.H269Q 0.12 deleterious(0) possibly_damaging(0.59) TCGA-49-AAR4-01 3 15094910 15094910 G A MRPS25 Silent p.I102I 0.09 TCGA-49-AAR4-01 3 151055998 151055998 A C P2RY12 Missense_Mutation p.I212M 0.09 deleterious(0) probably_damaging(0.999) TCGA-49-AAR4-01 3 155611434 155611434 C T GMPS Missense_Mutation p.S52F 0.13 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 3 164737451 164737451 G T SI Missense_Mutation p.A1121E 0.16 tolerated(0.16) benign(0.078) TCGA-49-AAR4-01 3 172631505 172631505 G T SPATA16 Missense_Mutation p.D511E 0.23 deleterious(0) possibly_damaging(0.621) TCGA-49-AAR4-01 3 178745259 178745259 T A ZMAT3 Nonsense_Mutation p.K204* 0.18 TCGA-49-AAR4-01 3 179533741 179533741 C T PEX5L Missense_Mutation p.E331K 0.15 deleterious(0.05) benign(0.266) TCGA-49-AAR4-01 3 186338595 186338595 G T AHSG Missense_Mutation p.G327V 0.19 deleterious(0.01) benign(0.3) TCGA-49-AAR4-01 3 194366946 194366946 C A LSG1 Nonsense_Mutation p.G524* 0.12 TCGA-49-AAR4-01 3 197421306 197421306 G A KIAA0226 Missense_Mutation p.R542W 0.12 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 3 197557692 197557692 C T LRCH3 Silent p.F313F 0.15 TCGA-49-AAR4-01 3 37337603 37337603 G A GOLGA4 Missense_Mutation p.R258Q 0.06 benign(0.015) TCGA-49-AAR4-01 3 407747 407747 C A CHL1 Missense_Mutation p.S567Y 0.09 deleterious(0.03) possibly_damaging(0.717) TCGA-49-AAR4-01 3 45136955 45136955 C G CDCP1 Missense_Mutation p.C377S 0.15 tolerated(0.15) probably_damaging(0.999) TCGA-49-AAR4-01 3 46415423 46415423 G A CCR5 Missense_Mutation p.G344R 0.11 deleterious(0.04) probably_damaging(0.972) TCGA-49-AAR4-01 3 62355980 62355980 C A FEZF2 Missense_Mutation p.E386D 0.08 deleterious(0.01) benign(0.009) TCGA-49-AAR4-01 3 62535588 62535588 G A CADPS Silent p.I652I 0.09 TCGA-49-AAR4-01 3 73432753 73432753 C A PDZRN3 Missense_Mutation p.Q988H 0.09 tolerated(0.05) probably_damaging(0.999) TCGA-49-AAR4-01 3 88040320 88040320 G T HTR1F Missense_Mutation p.G141C 0.12 deleterious(0.02) probably_damaging(0.972) TCGA-49-AAR4-01 4 100460510 100460510 A T C4orf17 Missense_Mutation p.E273D 0.09 tolerated(0.09) benign(0.125) TCGA-49-AAR4-01 4 100544083 100544083 G T MTTP 3'UTR 0.15 TCGA-49-AAR4-01 4 107152926 107152926 T A TBCK Silent p.S550S 0.13 TCGA-49-AAR4-01 4 107846961 107846961 T - DKK2 Frame_Shift_Del p.N123Ifs*13 0.08 TCGA-49-AAR4-01 4 109084840 109084840 C A LEF1 Missense_Mutation p.G100C 0.11 deleterious(0) probably_damaging(0.93) TCGA-49-AAR4-01 4 110757269 110757269 A T RRH Silent p.P168P 0.08 TCGA-49-AAR4-01 4 110866301 110866301 G C EGF Missense_Mutation p.W270C 0.19 tolerated(0.08) benign(0.021) TCGA-49-AAR4-01 4 113468494 113468494 C A C4orf21 Missense_Mutation p.A1849S 0.15 tolerated(0.45) benign(0.264) TCGA-49-AAR4-01 4 128651878 128651878 G T SLC25A31 Nonsense_Mutation p.E60* 0.09 TCGA-49-AAR4-01 4 138449942 138449942 C A PCDH18 Missense_Mutation p.Q840H 0.07 tolerated(0.1) benign(0.051) TCGA-49-AAR4-01 4 142640531 142640531 G T IL15 5'UTR 0.17 TCGA-49-AAR4-01 4 144107040 144107040 G C USP38 Missense_Mutation p.R146P 0.08 deleterious(0.02) possibly_damaging(0.839) TCGA-49-AAR4-01 4 145636549 145636549 G A HHIP Missense_Mutation p.G549S 0.15 tolerated(0.18) possibly_damaging(0.652) TCGA-49-AAR4-01 4 155157950 155157950 C A DCHS2 Silent p.V2163V 0.14 TCGA-49-AAR4-01 4 155295099 155295099 C A DCHS2 Missense_Mutation p.Q145H 0.09 tolerated(0.65) benign(0.108) TCGA-49-AAR4-01 4 158254502 158254502 G A GRIA2 Silent p.R384R 0.09 TCGA-49-AAR4-01 4 162508686 162508686 G A FSTL5 Silent p.T312T 0.12 TCGA-49-AAR4-01 4 162508687 162508687 G A FSTL5 Missense_Mutation p.T312I 0.12 deleterious(0) probably_damaging(0.993) TCGA-49-AAR4-01 4 162697071 162697071 C A FSTL5 Missense_Mutation p.A189S 0.09 tolerated(0.41) benign(0.02) TCGA-49-AAR4-01 4 164393849 164393849 C T TKTL2 Silent p.T346T 0.08 TCGA-49-AAR4-01 4 164534479 164534479 G C MARCH1 Missense_Mutation p.Q77E 0.14 tolerated(0.27) benign(0.146) TCGA-49-AAR4-01 4 166963263 166963263 G C TLL1 Missense_Mutation p.W449S 0.14 tolerated(0.48) benign(0.041) TCGA-49-AAR4-01 4 187455641 187455641 C G MTNR1A Silent p.L85L 0.09 TCGA-49-AAR4-01 4 187557322 187557322 G C FAT1 Missense_Mutation p.S1347C 0.10 possibly_damaging(0.469) TCGA-49-AAR4-01 4 26483640 26483640 C A CCKAR Missense_Mutation p.A303S 0.08 tolerated(0.12) benign(0.394) TCGA-49-AAR4-01 4 41607987 41607987 A T LIMCH1 Missense_Mutation p.K151M 0.14 deleterious(0) probably_damaging(0.999) TCGA-49-AAR4-01 4 46099246 46099246 A G GABRG1 Silent p.Y75Y 0.08 TCGA-49-AAR4-01 4 46930514 46930514 G T GABRA4 Missense_Mutation p.P465T 0.08 tolerated_low_confidence(0.1) benign(0.007) TCGA-49-AAR4-01 4 49032856 49032856 A G CWH43 Missense_Mutation p.T463A 0.08 tolerated(0.08) benign(0.329) TCGA-49-AAR4-01 4 70351080 70351080 G T UGT2B4 Missense_Mutation p.H386N 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-49-AAR4-01 4 71024243 71024243 G T C4orf40 Missense_Mutation p.G92C 0.10 deleterious(0.03) probably_damaging(0.991) TCGA-49-AAR4-01 4 74703377 74703377 C A CXCL6 3'UTR 0.08 TCGA-49-AAR4-01 4 74863308 74863308 C A CXCL5 3'UTR 0.08 TCGA-49-AAR4-01 4 76885337 76885337 C - SDAD1 Frame_Shift_Del p.A378Qfs*14 0.09 TCGA-49-AAR4-01 4 94693360 94693360 C A GRID2 Missense_Mutation p.T912K 0.15 deleterious_low_confidence(0.02) benign(0.045) TCGA-49-AAR4-01 4 94750813 94750813 G T ATOH1 Missense_Mutation p.G246W 0.12 deleterious(0) possibly_damaging(0.51) TCGA-49-AAR4-01 4 96140401 96140401 G T UNC5C Missense_Mutation p.A455D 0.08 deleterious(0.04) possibly_damaging(0.889) TCGA-49-AAR4-01 4 99997510 99997510 A C ADH5 Missense_Mutation p.V253G 0.07 deleterious(0) probably_damaging(0.991) TCGA-49-AAR4-01 5 10448477 10448477 G A ROPN1L Silent p.L79L 0.10 TCGA-49-AAR4-01 5 110560212 110560212 G T CAMK4 Missense_Mutation p.A11S 0.25 tolerated_low_confidence(0.65) benign(0.001) TCGA-49-AAR4-01 5 110679721 110679721 G T CAMK4 Splice_Site p.X54_splice 0.11 TCGA-49-AAR4-01 5 126732232 126732232 G T MEGF10 Missense_Mutation p.G141C 0.11 deleterious(0.02) possibly_damaging(0.469) TCGA-49-AAR4-01 5 126746162 126746162 C T MEGF10 Silent p.Y333Y 0.20 TCGA-49-AAR4-01 5 134147408 134147408 G T DDX46 Missense_Mutation p.S770I 0.15 deleterious(0) benign(0.374) TCGA-49-AAR4-01 5 139876448 139876448 G C ANKHD1 Missense_Mutation p.Q863H 0.09 unknown(0) TCGA-49-AAR4-01 5 139876593 139876593 G C ANKHD1 Missense_Mutation p.E912Q 0.08 unknown(0) TCGA-49-AAR4-01 5 140202918 140202918 C A PCDHA5 Missense_Mutation p.Q520K 0.11 deleterious_low_confidence(0.02) benign(0.162) TCGA-49-AAR4-01 5 140255166 140255166 G A PCDHA12 Missense_Mutation p.E37K 0.06 deleterious_low_confidence(0) probably_damaging(1) TCGA-49-AAR4-01 5 140480746 140480746 T A PCDHB3 Silent p.T171T 0.10 TCGA-49-AAR4-01 5 140517049 140517049 C A PCDHB5 Missense_Mutation p.A678D 0.12 tolerated_low_confidence(0.83) benign(0.004) TCGA-49-AAR4-01 5 140531145 140531145 C A PCDHB6 Missense_Mutation p.T436N 0.12 deleterious(0) benign(0.133) TCGA-49-AAR4-01 5 140572312 140572312 G A PCDHB10 Missense_Mutation p.G63R 0.08 tolerated_low_confidence(0.21) possibly_damaging(0.526) TCGA-49-AAR4-01 5 140573450 140573450 C A PCDHB10 Missense_Mutation p.S442Y 0.10 deleterious_low_confidence(0) possibly_damaging(0.577) TCGA-49-AAR4-01 5 141050078 141050078 C A ARAP3 Splice_Site p.X703_splice 0.21 TCGA-49-AAR4-01 5 14291234 14291234 G T TRIO Missense_Mutation p.R317L 0.25 benign(0.354) TCGA-49-AAR4-01 5 150714907 150714907 T C SLC36A2 Missense_Mutation p.I243V 0.20 deleterious(0.04) benign(0.001) TCGA-49-AAR4-01 5 156608060 156608060 G T ITK Silent p.S24S 0.10 TCGA-49-AAR4-01 5 169506009 169506009 G T DOCK2 Silent p.T1675T 0.13 TCGA-49-AAR4-01 5 175717935 175717935 A G SIMC1 Intron 0.19 TCGA-49-AAR4-01 5 180477111 180477111 T A BTNL9 Missense_Mutation p.S160T 0.11 deleterious(0.05) benign(0.417) TCGA-49-AAR4-01 5 180582216 180582216 T C OR2V2 Missense_Mutation p.S92P 0.09 deleterious(0.02) possibly_damaging(0.643) TCGA-49-AAR4-01 5 26915894 26915894 G C CDH9 Missense_Mutation p.L123V 0.07 tolerated(0.42) benign(0.386) TCGA-49-AAR4-01 5 32091233 32091233 C G PDZD2 Missense_Mutation p.T2560R 0.26 tolerated(0.57) benign(0.033) TCGA-49-AAR4-01 5 33549421 33549421 C A ADAMTS12 Missense_Mutation p.R1398L 0.24 deleterious(0) possibly_damaging(0.899) TCGA-49-AAR4-01 5 35065859 35065859 C A PRLR Missense_Mutation p.G401C 0.22 deleterious(0.01) possibly_damaging(0.838) TCGA-49-AAR4-01 5 35740251 35740251 T G SPEF2 Missense_Mutation p.L1071R 0.09 deleterious(0) probably_damaging(0.998) TCGA-49-AAR4-01 5 35807254 35807254 G - SPEF2 Frame_Shift_Del p.D1760Tfs*2 0.08 TCGA-49-AAR4-01 5 35954408 35954408 C A UGT3A1 Missense_Mutation p.V490L 0.11 tolerated(1) benign(0.002) TCGA-49-AAR4-01 5 37196081 37196081 G A C5orf42 Silent p.S1230S 0.15 TCGA-49-AAR4-01 5 38950621 38950621 C A RICTOR Missense_Mutation p.R1110L 0.17 deleterious(0.05) probably_damaging(0.999) TCGA-49-AAR4-01 5 55407132 55407132 A G ANKRD55 Silent p.N481N 0.13 TCGA-49-AAR4-01 5 644452 644452 G C CEP72 Missense_Mutation p.E526D 0.05 deleterious(0.04) probably_damaging(0.951) TCGA-49-AAR4-01 5 6600042 6600042 C T NSUN2 Silent p.R767R 0.14 TCGA-49-AAR4-01 5 75950816 75950816 T A IQGAP2 Missense_Mutation p.Y770N 0.12 deleterious(0) probably_damaging(0.999) TCGA-49-AAR4-01 5 82816021 82816021 G T VCAN Silent p.T632T 0.17 TCGA-49-AAR4-01 5 9238002 9238002 C A SEMA5A Missense_Mutation p.A91S 0.14 tolerated(0.08) benign(0.307) TCGA-49-AAR4-01 6 105609619 105609619 A T POPDC3 Missense_Mutation p.L56M 0.18 deleterious(0.03) possibly_damaging(0.794) TCGA-49-AAR4-01 6 110528728 110528728 A G CDC40 Silent p.S142S 0.11 TCGA-49-AAR4-01 6 112496635 112496635 G A LAMA4 Missense_Mutation p.P413S 0.17 tolerated(0.31) benign(0.015) TCGA-49-AAR4-01 6 116937882 116937882 C T RSPH4A Silent p.P32P 0.10 TCGA-49-AAR4-01 6 117663562 117663562 C A ROS1 Splice_Site p.X1557_splice 0.21 TCGA-49-AAR4-01 6 119327719 119327719 C T FAM184A Missense_Mutation p.E570K 0.05 tolerated(0.09) benign(0.171) TCGA-49-AAR4-01 6 121563476 121563476 C A TBC1D32 Missense_Mutation p.W676C 0.10 deleterious(0.01) benign(0.105) TCGA-49-AAR4-01 6 12164624 12164624 G T HIVEP1 Missense_Mutation p.R2696M 0.11 deleterious(0) probably_damaging(0.999) TCGA-49-AAR4-01 6 129609080 129609080 C A LAMA2 Missense_Mutation p.P876T 0.22 tolerated(0.07) probably_damaging(0.956) TCGA-49-AAR4-01 6 129762058 129762058 C A LAMA2 Missense_Mutation p.N2061K 0.12 tolerated(1) benign(0.392) TCGA-49-AAR4-01 6 131190754 131190754 C G EPB41L2 Missense_Mutation p.E852D 0.17 tolerated(0.67) benign(0.002) TCGA-49-AAR4-01 6 132031796 132031796 G A CTAGE9 Missense_Mutation p.A121V 0.15 tolerated(0.06) benign(0.018) TCGA-49-AAR4-01 6 132874419 132874419 C A TAAR8 Silent p.G196G 0.13 TCGA-49-AAR4-01 6 138201288 138201288 G C TNFAIP3 Missense_Mutation p.G663R 0.13 deleterious(0) probably_damaging(0.991) TCGA-49-AAR4-01 6 138601268 138601268 G A KIAA1244 Missense_Mutation p.D810N 0.12 tolerated(0.18) possibly_damaging(0.455) TCGA-49-AAR4-01 6 1390823 1390823 T A FOXF2 Nonsense_Mutation p.L214* 0.10 TCGA-49-AAR4-01 6 143094292 143094292 C T HIVEP2 Silent p.P528P 0.26 TCGA-49-AAR4-01 6 143810303 143810303 G T PEX3 Silent p.V354V 0.19 TCGA-49-AAR4-01 6 150048097 150048097 T C NUP43 3'UTR 0.17 TCGA-49-AAR4-01 6 152702345 152702345 G C SYNE1 Missense_Mutation p.D2935E 0.13 benign(0.036) TCGA-49-AAR4-01 6 15651562 15651562 C A DTNBP1 Missense_Mutation p.G48V 0.09 deleterious(0) probably_damaging(0.999) TCGA-49-AAR4-01 6 15651563 15651563 C A DTNBP1 Nonsense_Mutation p.G48* 0.09 TCGA-49-AAR4-01 6 29142345 29142345 G T OR2J2 Silent p.G311G 0.10 TCGA-49-AAR4-01 6 29323746 29323746 C A OR5V1 Missense_Mutation p.S76I 0.08 tolerated(0.08) benign(0.035) TCGA-49-AAR4-01 6 29796571 29796571 G - HLA-G Frame_Shift_Del p.K200Rfs*14 0.14 TCGA-49-AAR4-01 6 30157250 30157250 G A TRIM26 Silent p.T283T 0.09 TCGA-49-AAR4-01 6 30671314 30671314 C A MDC1 Missense_Mutation p.D1855Y 0.05 deleterious(0) possibly_damaging(0.556) TCGA-49-AAR4-01 6 33656119 33656119 A G ITPR3 Missense_Mutation p.E2160G 0.10 deleterious(0) possibly_damaging(0.908) TCGA-49-AAR4-01 6 35108611 35108611 G T TCP11 Missense_Mutation p.P26T 0.16 tolerated(0.1) benign(0.066) TCGA-49-AAR4-01 6 35393850 35393850 G T PPARD Missense_Mutation p.M440I 0.11 deleterious(0.01) benign(0.068) TCGA-49-AAR4-01 6 3850603 3850603 G C FAM50B Missense_Mutation p.E186D 0.07 tolerated(0.16) benign(0.031) TCGA-49-AAR4-01 6 43018067 43018067 C T CUL7 Missense_Mutation p.E519K 0.08 deleterious(0.03) probably_damaging(0.932) TCGA-49-AAR4-01 6 43306508 43306508 G A ZNF318 Missense_Mutation p.S1743F 0.06 probably_damaging(0.942) TCGA-49-AAR4-01 6 44144709 44144709 C A CAPN11 Missense_Mutation p.S404Y 0.06 deleterious(0) possibly_damaging(0.722) TCGA-49-AAR4-01 6 47253744 47253744 G A TNFRSF21 Silent p.A228A 0.10 TCGA-49-AAR4-01 6 50683257 50683257 G T TFAP2D Missense_Mutation p.M156I 0.16 tolerated(0.21) benign(0) TCGA-49-AAR4-01 6 71190726 71190726 C T FAM135A Missense_Mutation p.P222L 0.07 deleterious(0) benign(0.24) TCGA-49-AAR4-01 6 83075227 83075227 C T TPBG Silent p.I183I 0.06 TCGA-49-AAR4-01 6 89974140 89974140 C A GABRR2 Silent p.L359L 0.13 TCGA-49-AAR4-01 6 96034716 96034716 G T MANEA Missense_Mutation p.R134I 0.17 deleterious(0.03) possibly_damaging(0.452) TCGA-49-AAR4-01 6 97720933 97720933 C T MMS22L Missense_Mutation p.V116I 0.18 tolerated(0.97) benign(0.002) TCGA-49-AAR4-01 7 100466171 100466171 C A TRIP6 Missense_Mutation p.P140T 0.14 tolerated(0.06) benign(0.015) TCGA-49-AAR4-01 7 102047945 102047945 G T PRKRIP1 Nonsense_Mutation p.G153* 0.22 TCGA-49-AAR4-01 7 107415260 107415260 G A SLC26A3 Nonsense_Mutation p.R579* 0.18 TCGA-49-AAR4-01 7 107594167 107594168 AG T LAMB1 Nonsense_Mutation p.Y962* 0.10 TCGA-49-AAR4-01 7 108112917 108112917 C A PNPLA8 Silent p.L759L 0.10 TCGA-49-AAR4-01 7 1131332 1131332 C T GPER1 5'UTR 0.07 TCGA-49-AAR4-01 7 113518470 113518470 C A PPP1R3A Missense_Mutation p.D893Y 0.07 deleterious(0) benign(0.071) TCGA-49-AAR4-01 7 119915260 119915260 G T KCND2 Missense_Mutation p.G192W 0.09 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 7 127224982 127224982 G A GCC1 Silent p.D85D 0.10 TCGA-49-AAR4-01 7 127253809 127253809 C - PAX4 Splice_Site p.X180_splice 0.09 TCGA-49-AAR4-01 7 12728460 12728460 G T ARL4A Missense_Mutation p.R194L 0.10 deleterious(0) unknown(0) TCGA-49-AAR4-01 7 128845610 128845610 C A SMO Missense_Mutation p.L303I 0.12 tolerated(0.2) benign(0.042) TCGA-49-AAR4-01 7 129519452 129519452 C A UBE2H Missense_Mutation p.R54I 0.08 deleterious(0) possibly_damaging(0.906) TCGA-49-AAR4-01 7 138604031 138604031 G A KIAA1549 Missense_Mutation p.S114F 0.17 tolerated(0.11) benign(0.033) TCGA-49-AAR4-01 7 142622615 142622615 G A TRPV5 Intron 0.17 TCGA-49-AAR4-01 7 144098260 144098260 G T NOBOX Silent p.P241P 0.15 TCGA-49-AAR4-01 7 148802567 148802567 C G ZNF425 Missense_Mutation p.E132D 0.08 deleterious(0.03) benign(0.003) TCGA-49-AAR4-01 7 149521615 149521615 C T SSPO RNA 0.11 TCGA-49-AAR4-01 7 149530925 149530925 C T ZNF862 5'Flank 0.16 TCGA-49-AAR4-01 7 150499375 150499375 C A TMEM176A Missense_Mutation p.L83I 0.07 tolerated(0.13) benign(0.237) TCGA-49-AAR4-01 7 151133282 151133282 C A CRYGN Missense_Mutation p.V134L 0.17 deleterious(0.01) benign(0.119) TCGA-49-AAR4-01 7 154679434 154679434 G C DPP6 Missense_Mutation p.R765T 0.04 tolerated(0.1) possibly_damaging(0.853) TCGA-49-AAR4-01 7 154679442 154679442 G A DPP6 Missense_Mutation p.E768K 0.07 tolerated(0.09) possibly_damaging(0.89) TCGA-49-AAR4-01 7 19765372 19765372 C G TMEM196 Missense_Mutation p.C75S 0.07 deleterious(0.01) benign(0.291) TCGA-49-AAR4-01 7 31682920 31682920 C A CCDC129 Missense_Mutation p.H672N 0.11 tolerated(0.5) benign(0.006) TCGA-49-AAR4-01 7 31855755 31855755 C G PDE1C Missense_Mutation p.K592N 0.10 tolerated(0.09) possibly_damaging(0.905) TCGA-49-AAR4-01 7 35293131 35293131 G T TBX20 Missense_Mutation p.A34E 0.23 tolerated(0.87) benign(0.002) TCGA-49-AAR4-01 7 36917704 36917704 C A ELMO1 Missense_Mutation p.R578L 0.16 deleterious(0.01) probably_damaging(0.983) TCGA-49-AAR4-01 7 37780248 37780248 C A GPR141 Missense_Mutation p.L85M 0.10 tolerated(0.44) possibly_damaging(0.625) TCGA-49-AAR4-01 7 37780330 37780330 C A GPR141 Missense_Mutation p.T112N 0.09 deleterious(0.01) possibly_damaging(0.566) TCGA-49-AAR4-01 7 43485097 43485097 C A HECW1 Missense_Mutation p.P776T 0.14 tolerated_low_confidence(0.14) benign(0.001) TCGA-49-AAR4-01 7 43508547 43508547 C G HECW1 Missense_Mutation p.T981S 0.19 tolerated(0.49) benign(0.001) TCGA-49-AAR4-01 7 48312649 48312649 C T ABCA13 Missense_Mutation p.S1129L 0.08 possibly_damaging(0.71) TCGA-49-AAR4-01 7 53104185 53104185 C A POM121L12 Missense_Mutation p.S274Y 0.14 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-49-AAR4-01 7 55468970 55468970 G T LANCL2 Missense_Mutation p.G261V 0.18 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 7 56007605 56007605 T G ZNF713 Missense_Mutation p.L400R 0.08 deleterious(0) probably_damaging(0.999) TCGA-49-AAR4-01 7 66410186 66410186 G C TMEM248 Missense_Mutation p.G128A 0.10 tolerated(0.27) possibly_damaging(0.771) TCGA-49-AAR4-01 7 72891855 72891855 C A BAZ1B Missense_Mutation p.G646C 0.14 deleterious(0.02) probably_damaging(0.962) TCGA-49-AAR4-01 7 77407726 77407726 G T RSBN1L Missense_Mutation p.R622L 0.11 deleterious(0.04) probably_damaging(0.956) TCGA-49-AAR4-01 7 83590802 83590802 C A SEMA3A Missense_Mutation p.R734L 0.16 deleterious(0.04) probably_damaging(0.998) TCGA-49-AAR4-01 7 83590819 83590819 C A SEMA3A Missense_Mutation p.R728S 0.10 tolerated(0.38) possibly_damaging(0.521) TCGA-49-AAR4-01 7 84670034 84670034 C T SEMA3D Missense_Mutation p.R334K 0.08 tolerated(0.95) benign(0.015) TCGA-49-AAR4-01 7 97911715 97911715 C T BRI3 Silent p.T65T 0.12 TCGA-49-AAR4-01 7 98995531 98995531 C A PDAP1 Silent p.R147R 0.07 TCGA-49-AAR4-01 7 99998706 99998706 C - ZCWPW1 Frame_Shift_Del p.Q627Rfs*? 0.12 TCGA-49-AAR4-01 8 100883752 100883752 G C VPS13B Missense_Mutation p.E3883Q 0.07 tolerated(0.12) benign(0.403) TCGA-49-AAR4-01 8 109240549 109240549 G T EIF3E Missense_Mutation p.F223L 0.10 deleterious(0) probably_damaging(0.997) TCGA-49-AAR4-01 8 110394766 110394766 A T PKHD1L1 Missense_Mutation p.K128I 0.20 tolerated(0.1) possibly_damaging(0.486) TCGA-49-AAR4-01 8 113420589 113420589 C G CSMD3 Missense_Mutation p.V1855L 0.12 tolerated(0.06) benign(0.213) TCGA-49-AAR4-01 8 113651102 113651102 G T CSMD3 Missense_Mutation p.H1117N 0.11 tolerated(0.35) possibly_damaging(0.665) TCGA-49-AAR4-01 8 120613669 120613669 T C ENPP2 Missense_Mutation p.I289M 0.24 tolerated(0.19) benign(0.106) TCGA-49-AAR4-01 8 122626904 122626904 C A HAS2 Missense_Mutation p.W368C 0.07 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 8 131964246 131964246 T A ADCY8 Splice_Site p.X371_splice 0.10 TCGA-49-AAR4-01 8 133759245 133759245 C A TMEM71 Nonsense_Mutation p.E125* 0.08 TCGA-49-AAR4-01 8 134050890 134050890 A T SLA Missense_Mutation p.L277Q 0.09 deleterious(0) probably_damaging(0.989) TCGA-49-AAR4-01 8 139160875 139160875 C A FAM135B Silent p.L1112L 0.11 TCGA-49-AAR4-01 8 143565392 143565392 G T BAI1 Nonsense_Mutation p.E729* 0.12 TCGA-49-AAR4-01 8 143961224 143961224 T G CYP11B1 Silent p.A2A 0.07 TCGA-49-AAR4-01 8 145108190 145108190 C G OPLAH Missense_Mutation p.Q931H 0.10 tolerated(0.28) benign(0.049) TCGA-49-AAR4-01 8 17491598 17491598 C T PDGFRL Missense_Mutation p.P272L 0.18 deleterious(0) probably_damaging(0.914) TCGA-49-AAR4-01 8 18258101 18258101 T A NAT2 Silent p.P196P 0.11 TCGA-49-AAR4-01 8 21891772 21891772 G T NPM2 Missense_Mutation p.A173S 0.12 tolerated(0.3) benign(0.004) TCGA-49-AAR4-01 8 27311700 27311700 G T PTK2B Silent p.R875R 0.09 TCGA-49-AAR4-01 8 30210420 30210420 G A TUBBP1 RNA 0.09 TCGA-49-AAR4-01 8 51569493 51569493 G T SNTG1 Missense_Mutation p.A292S 0.11 tolerated(0.26) benign(0.028) TCGA-49-AAR4-01 8 53569415 53569415 C T RB1CC1 Missense_Mutation p.E992K 0.06 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-49-AAR4-01 8 55538035 55538035 A T RP1 Missense_Mutation p.L531F 0.11 deleterious(0.01) benign(0.086) TCGA-49-AAR4-01 8 67428163 67428163 C T C8orf46 Missense_Mutation p.P159L 0.06 tolerated(0.45) probably_damaging(0.998) TCGA-49-AAR4-01 8 67578455 67578455 G T VCPIP1 Missense_Mutation p.Q247K 0.08 tolerated(1) benign(0.004) TCGA-49-AAR4-01 8 70512989 70512989 G T SULF1 Splice_Site p.X295_splice 0.10 TCGA-49-AAR4-01 8 72984102 72984102 C A TRPA1 Missense_Mutation p.V38L 0.09 tolerated(0.27) benign(0.015) TCGA-49-AAR4-01 8 75737481 75737481 C T PI15 5'UTR 0.03 TCGA-49-AAR4-01 8 76459829 76459829 C A HNF4G Silent p.R89R 0.13 TCGA-49-AAR4-01 8 81411827 81411827 G C ZBTB10 Missense_Mutation p.Q357H 0.13 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 8 87680348 87680348 G T CNGB3 Missense_Mutation p.T181K 0.11 tolerated(0.57) benign(0) TCGA-49-AAR4-01 8 88885927 88885927 T A DCAF4L2 Missense_Mutation p.Q91H 0.10 deleterious(0) benign(0.212) TCGA-49-AAR4-01 8 89179897 89179897 C A MMP16 Splice_Site p.X237_splice 0.17 TCGA-49-AAR4-01 8 99170196 99170196 A T POP1 Silent p.G924G 0.11 TCGA-49-AAR4-01 9 104238337 104238337 C A TMEM246 Silent p.R346R 0.22 TCGA-49-AAR4-01 9 104432720 104432720 C A GRIN3A Missense_Mutation p.R658S 0.09 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 9 104432721 104432721 C A GRIN3A Missense_Mutation p.R658M 0.09 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 9 105767967 105767967 G A CYLC2 3'UTR 0.18 TCGA-49-AAR4-01 9 107361403 107361403 C A OR13C5 Missense_Mutation p.A98S 0.15 deleterious(0.03) benign(0.345) TCGA-49-AAR4-01 9 107361655 107361655 G C OR13C5 Missense_Mutation p.L14V 0.10 deleterious(0) probably_damaging(0.996) TCGA-49-AAR4-01 9 113208191 113208191 C A SVEP1 Missense_Mutation p.M1463I 0.11 benign(0) TCGA-49-AAR4-01 9 113208192 113208192 A T SVEP1 Missense_Mutation p.M1463K 0.11 benign(0.003) TCGA-49-AAR4-01 9 119977001 119977001 C G ASTN2 Silent p.L217L 0.14 TCGA-49-AAR4-01 9 120474744 120474744 C A TLR4 Missense_Mutation p.P113H 0.08 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 9 125281513 125281513 T C OR1J4 Silent p.L32L 0.16 TCGA-49-AAR4-01 9 126146142 126146142 T C DENND1A Missense_Mutation p.E543G 0.10 tolerated(0.06) benign(0.043) TCGA-49-AAR4-01 9 127920638 127920638 G C PPP6C Nonsense_Mutation p.Y124* 0.12 TCGA-49-AAR4-01 9 128697861 128697861 A G PBX3 Missense_Mutation p.K273R 0.10 tolerated(1) benign(0.06) TCGA-49-AAR4-01 9 130207521 130207521 C G ZNF79 3'UTR 0.13 TCGA-49-AAR4-01 9 136217922 136217922 A C RPL7A Missense_Mutation p.D231A 0.11 deleterious(0.03) benign(0.124) TCGA-49-AAR4-01 9 139396294 139396294 C T NOTCH1 Silent p.L1848L 0.17 TCGA-49-AAR4-01 9 14720259 14720259 A T CER1 Silent p.P211P 0.14 TCGA-49-AAR4-01 9 20363544 20363544 C T MLLT3 Missense_Mutation p.E421K 0.19 tolerated(0.06) possibly_damaging(0.549) TCGA-49-AAR4-01 9 26997933 26997933 G T LRRC19 Missense_Mutation p.Q130K 0.07 tolerated(0.49) benign(0.033) TCGA-49-AAR4-01 9 82324566 82324566 G T TLE4 Missense_Mutation p.R431L 0.16 deleterious(0) probably_damaging(0.998) TCGA-49-AAR4-01 9 8340409 8340410 CC A PTPRD Frame_Shift_Del p.W1729Ffs*11 0.19 TCGA-49-AAR4-01 9 84609737 84609737 C A SPATA31D1 Missense_Mutation p.A1451E 0.17 tolerated(0.13) probably_damaging(0.943) TCGA-49-AAR4-01 9 97062228 97062228 C T ZNF169 Nonsense_Mutation p.Q130* 0.08 TCGA-49-AAR4-01 X 100086572 100086572 G T CSTF2 Missense_Mutation p.G320C 0.41 deleterious(0) probably_damaging(0.998) TCGA-49-AAR4-01 X 103349407 103349407 G C SLC25A53 Missense_Mutation p.F178L 0.08 tolerated(0.55) benign(0.204) TCGA-49-AAR4-01 X 105855388 105855388 G A CXorf57 Silent p.R26R 0.10 TCGA-49-AAR4-01 X 105883816 105883816 G T CXorf57 Missense_Mutation p.R590I 0.20 tolerated(0.06) benign(0.001) TCGA-49-AAR4-01 X 110979968 110979968 A T ALG13 Silent p.A852A 0.19 TCGA-49-AAR4-01 X 114141829 114141829 G C HTR2C Missense_Mutation p.E410Q 0.08 tolerated(0.28) benign(0.368) TCGA-49-AAR4-01 X 114141983 114141983 G C HTR2C 3'UTR 0.10 TCGA-49-AAR4-01 X 119394843 119394843 G T TMEM255A Missense_Mutation p.S311Y 0.17 deleterious(0) probably_damaging(0.998) TCGA-49-AAR4-01 X 123211830 123211830 C T STAG2 Silent p.I899I 0.08 TCGA-49-AAR4-01 X 123775842 123775842 C T TENM1 Splice_Site p.X626_splice 0.10 TCGA-49-AAR4-01 X 123779023 123779023 G T TENM1 Missense_Mutation p.P616T 0.16 tolerated(0.51) possibly_damaging(0.627) TCGA-49-AAR4-01 X 123779060 123779060 G T TENM1 Silent p.G603G 0.21 TCGA-49-AAR4-01 X 12994931 12994931 T C TMSB4X 3'UTR 0.24 TCGA-49-AAR4-01 X 134856852 134856852 G T CT45A1 3'UTR 0.07 TCGA-49-AAR4-01 X 134947441 134947441 G T CT45A5 Missense_Mutation p.A169E 0.24 deleterious(0) probably_damaging(0.927) TCGA-49-AAR4-01 X 135570577 135570577 C G BRS3 Missense_Mutation p.P102A 0.20 deleterious(0) probably_damaging(1) TCGA-49-AAR4-01 X 135754228 135754228 G C ARHGEF6 Missense_Mutation p.L696V 0.14 tolerated(0.09) benign(0.005) TCGA-49-AAR4-01 X 142718066 142718066 G T SLITRK4 Missense_Mutation p.P287T 0.17 tolerated(0.08) benign(0.068) TCGA-49-AAR4-01 X 148062283 148062283 G C AFF2 Missense_Mutation p.V1196L 0.08 deleterious(0.03) possibly_damaging(0.782) TCGA-49-AAR4-01 X 148770584 148770584 C A MAGEA11 5'UTR 0.17 TCGA-49-AAR4-01 X 151533017 151533017 C A GABRA3 Missense_Mutation p.C9F 0.25 tolerated_low_confidence(0.42) benign(0) TCGA-49-AAR4-01 X 153132263 153132263 C A L1CAM Missense_Mutation p.G758W 0.19 deleterious(0.02) probably_damaging(0.956) TCGA-49-AAR4-01 X 153588908 153588908 G A FLNA Silent p.P1085P 0.16 TCGA-49-AAR4-01 X 30236791 30236791 G A MAGEB2 Missense_Mutation p.E32K 0.18 deleterious(0.04) benign(0.161) TCGA-49-AAR4-01 X 30578036 30578036 G A CXorf21 Missense_Mutation p.S146F 0.11 tolerated(0.7) benign(0.096) TCGA-49-AAR4-01 X 34148490 34148490 T A FAM47A Nonsense_Mutation p.R636* 0.12 TCGA-49-AAR4-01 X 37027477 37027477 C A FAM47C Missense_Mutation p.P332T 0.20 deleterious(0.01) probably_damaging(0.913) TCGA-49-AAR4-01 X 37027707 37027707 G T FAM47C Missense_Mutation p.K408N 0.25 tolerated(0.1) probably_damaging(0.958) TCGA-49-AAR4-01 X 40993995 40993995 G C USP9X Missense_Mutation p.E114Q 0.12 deleterious(0.05) probably_damaging(0.968) TCGA-49-AAR4-01 X 53579641 53579641 C T HUWE1 Missense_Mutation p.R2903K 0.19 benign(0) TCGA-49-AAR4-01 X 5811434 5811434 G T NLGN4X Silent p.T625T 0.11 TCGA-49-AAR4-01 X 70598761 70598761 G T TAF1 Missense_Mutation p.D434Y 0.07 deleterious(0) probably_damaging(0.924) TCGA-49-AAR4-01 X 88009043 88009043 G T CPXCR1 Nonsense_Mutation p.E210* 0.26 TCGA-49-AAR4-01 X 9622303 9622303 A T TBL1X Missense_Mutation p.K51M 0.25 deleterious_low_confidence(0) possibly_damaging(0.459) TCGA-49-AAR4-01 Y 4925092 4925092 G T PCDH11Y Missense_Mutation p.L76F 0.15 tolerated(0.06) possibly_damaging(0.583) TCGA-49-AAR4-01 Y 5605975 5605975 C - PCDH11Y Frame_Shift_Del p.L1340Cfs*? 0.29 TCGA-49-AAR9-01 10 101124252 101124252 A T CNNM1 Missense_Mutation p.I703F 0.50 deleterious(0.01) possibly_damaging(0.814) TCGA-49-AAR9-01 10 101659797 101659797 C A DNMBP Nonsense_Mutation p.E861* 0.41 TCGA-49-AAR9-01 10 103546346 103546346 T G MGEA5 Splice_Site p.X872_splice 0.38 TCGA-49-AAR9-01 10 115970640 115970640 C A TDRD1 Missense_Mutation p.A525E 0.40 tolerated(0.45) probably_damaging(0.986) TCGA-49-AAR9-01 10 116049304 116049304 A T VWA2 Nonstop_Mutation p.*726Cext*16 0.24 TCGA-49-AAR9-01 10 119800007 119800007 C A RAB11FIP2 Missense_Mutation p.Q141H 0.44 deleterious(0) probably_damaging(0.99) TCGA-49-AAR9-01 10 126490361 126490361 C G FAM175B 5'UTR 0.25 TCGA-49-AAR9-01 10 13230898 13230898 T G MCM10 Missense_Mutation p.C412W 0.34 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 10 133976916 133976916 G A JAKMIP3 Silent p.Q806Q 0.64 TCGA-49-AAR9-01 10 134886450 134886450 A G GPR123 Missense_Mutation p.K162E 0.58 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-49-AAR9-01 10 16970193 16970193 A C CUBN Missense_Mutation p.S2078R 0.33 deleterious(0.02) probably_damaging(0.984) TCGA-49-AAR9-01 10 17061851 17061851 C A CUBN Missense_Mutation p.Q1383H 0.19 deleterious(0) probably_damaging(0.989) TCGA-49-AAR9-01 10 17271859 17271859 G C VIM Silent p.L146L 0.36 TCGA-49-AAR9-01 10 25888252 25888252 G A GPR158 3'UTR 0.32 TCGA-49-AAR9-01 10 31133857 31133857 G T ZNF438 3'UTR 0.36 TCGA-49-AAR9-01 10 32197726 32197726 C G ARHGAP12 Missense_Mutation p.E20Q 0.37 tolerated(0.07) probably_damaging(0.997) TCGA-49-AAR9-01 10 50285341 50285341 C A VSTM4 Missense_Mutation p.C186F 0.11 tolerated(0.05) probably_damaging(0.996) TCGA-49-AAR9-01 10 50946065 50946065 C A OGDHL Silent p.V815V 0.35 TCGA-49-AAR9-01 10 55568991 55568991 T A PCDH15 Missense_Mutation p.T541S 0.19 tolerated_low_confidence(0.21) unknown(0) TCGA-49-AAR9-01 10 70451625 70451625 T A TET1 3'UTR 0.45 TCGA-49-AAR9-01 10 73550972 73550972 G T CDH23 5'Flank 0.50 TCGA-49-AAR9-01 10 8100495 8100495 C A GATA3 Missense_Mutation p.P157T 0.66 deleterious(0.04) probably_damaging(0.945) TCGA-49-AAR9-01 10 81063848 81063848 G C ZMIZ1 Silent p.T734T 0.33 TCGA-49-AAR9-01 10 859024 859024 C G LARP4B Missense_Mutation p.A687P 0.67 tolerated(0.23) benign(0.002) TCGA-49-AAR9-01 10 85992296 85992296 T C LRIT1 Missense_Mutation p.D420G 0.28 tolerated(0.46) benign(0.001) TCGA-49-AAR9-01 10 86223739 86223739 T A CCSER2 Missense_Mutation p.S705R 0.50 deleterious(0) probably_damaging(0.999) TCGA-49-AAR9-01 10 93940773 93940773 C G CPEB3 Missense_Mutation p.R390P 0.47 deleterious(0) possibly_damaging(0.754) TCGA-49-AAR9-01 10 95518089 95518089 G A LGI1 Missense_Mutation p.R63H 0.46 tolerated(0.22) benign(0.013) TCGA-49-AAR9-01 10 97919544 97919544 T A ZNF518A RNA 0.36 TCGA-49-AAR9-01 10 98079040 98079040 A T DNTT Missense_Mutation p.S134C 0.38 tolerated(0.09) possibly_damaging(0.572) TCGA-49-AAR9-01 11 108384174 108384174 T G EXPH5 Missense_Mutation p.K687T 0.36 deleterious(0.02) benign(0.142) TCGA-49-AAR9-01 11 110102668 110102668 C A RDX Missense_Mutation p.D560Y 0.32 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 11 111575783 111575783 C - SIK2 Frame_Shift_Del p.R341Gfs*35 0.24 TCGA-49-AAR9-01 11 113076892 113076892 C A NCAM1 Silent p.V265V 0.35 TCGA-49-AAR9-01 11 114393671 114393671 G T NXPE1 Silent p.G204G 0.24 TCGA-49-AAR9-01 11 115049436 115049436 C A CADM1 Missense_Mutation p.V380F 0.43 deleterious(0) probably_damaging(0.994) TCGA-49-AAR9-01 11 117308738 117308738 G C DSCAML1 Silent p.S1495S 0.29 TCGA-49-AAR9-01 11 118240173 118240173 A G UBE4A Missense_Mutation p.S111G 0.38 tolerated(0.19) benign(0.03) TCGA-49-AAR9-01 11 119170448 119170448 G A CBL Missense_Mutation p.R893Q 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-49-AAR9-01 11 120531089 120531090 - C GRIK4 Frame_Shift_Ins p.H23Afs*35 0.28 TCGA-49-AAR9-01 11 1213298 1213298 C T MUC5AC RNA 0.31 TCGA-49-AAR9-01 11 123909293 123909293 G T OR10G7 Nonsense_Mutation p.S139* 0.22 TCGA-49-AAR9-01 11 124294109 124294109 A T OR8B4 Missense_Mutation p.I220K 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-49-AAR9-01 11 124761263 124761263 C A ROBO4 Missense_Mutation p.R627L 0.42 tolerated(0.11) benign(0.002) TCGA-49-AAR9-01 11 125237756 125237756 C A PKNOX2 Silent p.A34A 0.40 TCGA-49-AAR9-01 11 128709398 128709398 C T KCNJ1 Silent p.L266L 0.48 TCGA-49-AAR9-01 11 128868245 128868245 C A ARHGAP32 Silent p.L374L 0.27 TCGA-49-AAR9-01 11 1629198 1629198 C A KRTAP5-3 Missense_Mutation p.G140C 0.38 tolerated(0.81) unknown(0) TCGA-49-AAR9-01 11 18736121 18736121 C T IGSF22 Missense_Mutation p.G528R 0.28 tolerated(0.06) benign(0.263) TCGA-49-AAR9-01 11 20676432 20676432 G A SLC6A5 3'UTR 0.25 TCGA-49-AAR9-01 11 2154381 2154381 G T IGF2 Missense_Mutation p.R183S 0.43 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 11 31115639 31115639 T C DCDC1 Silent p.P692P 0.07 TCGA-49-AAR9-01 11 31671711 31671711 A G ELP4 Missense_Mutation p.D362G 0.25 deleterious(0.04) possibly_damaging(0.879) TCGA-49-AAR9-01 11 32450145 32450145 C A WT1 Missense_Mutation p.D223Y 0.20 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-49-AAR9-01 11 33564118 33564118 G T KIAA1549L Missense_Mutation p.A40S 0.73 tolerated_low_confidence(0.07) benign(0.015) TCGA-49-AAR9-01 11 3688648 3688648 C A CHRNA10 Missense_Mutation p.A237S 0.65 tolerated(0.7) benign(0.014) TCGA-49-AAR9-01 11 45832808 45832808 G A SLC35C1 Nonsense_Mutation p.W339* 0.31 TCGA-49-AAR9-01 11 46784287 46784287 C A CKAP5 Missense_Mutation p.R1306L 0.32 deleterious(0) possibly_damaging(0.681) TCGA-49-AAR9-01 11 46889641 46889641 G T LRP4 Missense_Mutation p.P1659H 0.23 deleterious(0.02) probably_damaging(0.921) TCGA-49-AAR9-01 11 46889642 46889642 G T LRP4 Missense_Mutation p.P1659T 0.25 tolerated(0.11) possibly_damaging(0.702) TCGA-49-AAR9-01 11 47772826 47772826 G A FNBP4 Silent p.G218G 0.35 TCGA-49-AAR9-01 11 4824715 4824715 G T OR52R1 Missense_Mutation p.T299N 0.22 deleterious(0.01) possibly_damaging(0.589) TCGA-49-AAR9-01 11 55406154 55406154 C A OR4P4 Silent p.G107G 0.49 TCGA-49-AAR9-01 11 55606720 55606720 G T OR5D16 Missense_Mutation p.A165S 0.41 deleterious(0.01) possibly_damaging(0.685) TCGA-49-AAR9-01 11 55652977 55652977 C A TRIM51 Missense_Mutation p.P25T 0.37 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 11 55653239 55653239 G C TRIM51 Missense_Mutation p.C112S 0.37 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 11 55653288 55653288 C G TRIM51 Silent p.P128P 0.34 TCGA-49-AAR9-01 11 55681379 55681379 T A OR5W2 Missense_Mutation p.E227V 0.32 deleterious(0) benign(0.035) TCGA-49-AAR9-01 11 55681386 55681386 C A OR5W2 Missense_Mutation p.V225F 0.28 deleterious(0.01) possibly_damaging(0.695) TCGA-49-AAR9-01 11 55927609 55927609 G A OR8K5 Missense_Mutation p.S62F 0.42 tolerated_low_confidence(1) benign(0) TCGA-49-AAR9-01 11 56310027 56310027 G T OR5M11 Missense_Mutation p.A236E 0.32 deleterious(0) probably_damaging(0.983) TCGA-49-AAR9-01 11 56409001 56409001 C G OR5AP2 Missense_Mutation p.K305N 0.36 tolerated(0.34) benign(0) TCGA-49-AAR9-01 11 57327852 57327852 G C UBE2L6 Missense_Mutation p.S27R 0.07 tolerated(0.2) benign(0.261) TCGA-49-AAR9-01 11 60160167 60160167 G T MS4A7 Missense_Mutation p.V186L 0.23 tolerated(0.28) benign(0.093) TCGA-49-AAR9-01 11 61249352 61249352 C T PPP1R32 Missense_Mutation p.P24L 0.25 tolerated(0.62) probably_damaging(1) TCGA-49-AAR9-01 11 63987697 63987697 G T FERMT3 Nonsense_Mutation p.E408* 0.36 TCGA-49-AAR9-01 11 64822127 64822127 G T NAALADL1 Silent p.P229P 0.52 TCGA-49-AAR9-01 11 64846867 64846867 G T CDCA5 Silent p.P212P 0.26 TCGA-49-AAR9-01 11 66325188 66325188 C A CTD-3074O7.2 3'Flank 0.20 TCGA-49-AAR9-01 11 69588199 69588199 T G FGF4 Missense_Mutation p.N167H 0.29 deleterious(0) probably_damaging(0.997) TCGA-49-AAR9-01 11 73785605 73785605 T G C2CD3 Silent p.S1548S 0.50 TCGA-49-AAR9-01 11 73850717 73850717 C A C2CD3 Missense_Mutation p.D214Y 0.33 deleterious(0.03) benign(0.333) TCGA-49-AAR9-01 11 76371140 76371140 C A LRRC32 Missense_Mutation p.Q499H 0.32 tolerated(0.57) benign(0.005) TCGA-49-AAR9-01 11 76372046 76372046 G T LRRC32 Silent p.P197P 0.17 TCGA-49-AAR9-01 11 77436649 77436649 C A RSF1 Missense_Mutation p.R225L 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-49-AAR9-01 11 7981802 7981802 G T NLRP10 Missense_Mutation p.Q453K 0.69 deleterious(0.02) benign(0.077) TCGA-49-AAR9-01 11 7981995 7981995 G A NLRP10 Silent p.Y388Y 0.53 TCGA-49-AAR9-01 11 85411572 85411572 G - SYTL2 Frame_Shift_Del p.P1118Qfs*19 0.37 TCGA-49-AAR9-01 11 88337911 88337911 C T GRM5 Missense_Mutation p.D457N 0.45 deleterious(0.04) probably_damaging(0.998) TCGA-49-AAR9-01 11 92533613 92533613 C G FAT3 Missense_Mutation p.S2478R 0.33 possibly_damaging(0.853) TCGA-49-AAR9-01 11 92534830 92534830 A T FAT3 Missense_Mutation p.E2884V 0.25 probably_damaging(1) TCGA-49-AAR9-01 11 99690397 99690397 G T CNTN5 Nonsense_Mutation p.G60* 0.16 TCGA-49-AAR9-01 12 100041834 100041834 C A FAM71C 5'UTR 0.39 TCGA-49-AAR9-01 12 101757432 101757432 C A UTP20 Silent p.R1957R 0.10 TCGA-49-AAR9-01 12 102061553 102061553 G C MYBPC1 Silent p.T793T 0.42 TCGA-49-AAR9-01 12 10324598 10324598 T A OLR1 Intron 0.26 TCGA-49-AAR9-01 12 109998852 109998852 C T MMAB Missense_Mutation p.E193K 0.52 deleterious(0.01) probably_damaging(1) TCGA-49-AAR9-01 12 11061428 11061428 T A TAS2R13 Missense_Mutation p.D157V 0.30 tolerated(0.12) benign(0.158) TCGA-49-AAR9-01 12 111785989 111785989 A T CUX2 Missense_Mutation p.M1441L 0.47 tolerated_low_confidence(0.13) benign(0.004) TCGA-49-AAR9-01 12 114395812 114395812 C A RBM19 Silent p.L205L 0.33 TCGA-49-AAR9-01 12 11992136 11992136 G A ETV6 Missense_Mutation p.E76K 0.13 deleterious(0) probably_damaging(0.991) TCGA-49-AAR9-01 12 123187058 123187058 A T HCAR2 Missense_Mutation p.L258Q 0.50 deleterious(0.01) benign(0.314) TCGA-49-AAR9-01 12 129294651 129294651 C A SLC15A4 Missense_Mutation p.G283V 0.44 tolerated(0.19) benign(0.038) TCGA-49-AAR9-01 12 131622769 131622769 G T GPR133 Missense_Mutation p.D842Y 0.85 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-49-AAR9-01 12 14019104 14019104 C A GRIN2B Missense_Mutation p.W13C 0.28 deleterious_low_confidence(0.02) benign(0.03) TCGA-49-AAR9-01 12 14613485 14613485 C T ATF7IP Nonsense_Mutation p.Q739* 0.28 TCGA-49-AAR9-01 12 14959252 14959252 C T SMCO3 Silent p.L121L 0.28 TCGA-49-AAR9-01 12 18524113 18524113 G T PIK3C2G Splice_Site p.X542_splice 0.27 TCGA-49-AAR9-01 12 19406947 19406947 G T PLEKHA5 Missense_Mutation p.V101L 0.27 tolerated(0.44) probably_damaging(0.986) TCGA-49-AAR9-01 12 20890099 20890099 A C SLCO1C1 Missense_Mutation p.K481Q 0.47 tolerated(0.22) benign(0.102) TCGA-49-AAR9-01 12 21011428 21011428 G T LST3 Silent p.P94P 0.32 TCGA-49-AAR9-01 12 21054342 21054342 G A SLCO1B3 Nonsense_Mutation p.W602* 0.25 TCGA-49-AAR9-01 12 21196408 21196408 A T SLCO1B7 Missense_Mutation p.R243W 0.26 deleterious(0) possibly_damaging(0.818) TCGA-49-AAR9-01 12 21454203 21454203 C G SLCO1A2 Missense_Mutation p.G197A 0.34 tolerated(0.28) possibly_damaging(0.818) TCGA-49-AAR9-01 12 21919061 21919061 C A KCNJ8 Nonsense_Mutation p.E291* 0.03 TCGA-49-AAR9-01 12 22796820 22796820 G A ETNK1 Missense_Mutation p.V183I 0.04 tolerated(0.25) benign(0.078) TCGA-49-AAR9-01 12 23716218 23716218 C A SOX5 Missense_Mutation p.G488C 0.10 deleterious(0.01) probably_damaging(0.935) TCGA-49-AAR9-01 12 2760753 2760753 C T CACNA1C Intron 0.35 TCGA-49-AAR9-01 12 2788661 2788661 C A CACNA1C Silent p.R1763R 0.25 TCGA-49-AAR9-01 12 27944712 27944712 A G KLHL42 Missense_Mutation p.E315G 0.03 deleterious(0) probably_damaging(0.999) TCGA-49-AAR9-01 12 29514595 29514595 C A ERGIC2 Missense_Mutation p.Q119H 0.57 deleterious(0.01) benign(0.01) TCGA-49-AAR9-01 12 30881746 30881746 T C CAPRIN2 Missense_Mutation p.K540E 0.14 deleterious(0.04) benign(0.004) TCGA-49-AAR9-01 12 33021948 33021948 C T PKP2 Silent p.E361E 0.11 TCGA-49-AAR9-01 12 40012646 40012646 G T ABCD2 Missense_Mutation p.L258I 0.34 tolerated(0.28) benign(0.012) TCGA-49-AAR9-01 12 442758 442758 C A KDM5A Missense_Mutation p.E516D 0.25 tolerated(0.72) benign(0.01) TCGA-49-AAR9-01 12 46345439 46345439 A G SCAF11 Silent p.Y97Y 0.29 TCGA-49-AAR9-01 12 48537936 48537936 A C PFKM Missense_Mutation p.Q734P 0.37 deleterious(0) probably_damaging(0.999) TCGA-49-AAR9-01 12 4874619 4874619 C A GALNT8 Nonsense_Mutation p.C556* 0.40 TCGA-49-AAR9-01 12 4874620 4874620 C A GALNT8 Missense_Mutation p.L557M 0.40 deleterious(0) probably_damaging(0.996) TCGA-49-AAR9-01 12 49729919 49729919 C A C1QL4 Silent p.A114A 0.35 TCGA-49-AAR9-01 12 51584288 51584288 G A POU6F1 Silent p.N216N 0.38 TCGA-49-AAR9-01 12 51856103 51856103 G T SLC4A8 Missense_Mutation p.D371Y 0.42 deleterious(0) probably_damaging(0.985) TCGA-49-AAR9-01 12 53073975 53073975 C A KRT1 Missense_Mutation p.G53V 0.26 tolerated(0.06) unknown(0) TCGA-49-AAR9-01 12 54575743 54575743 G A SMUG1 3'UTR 0.14 TCGA-49-AAR9-01 12 54575784 54575784 G A SMUG1 3'UTR 0.30 TCGA-49-AAR9-01 12 54943737 54943737 C T PDE1B Silent p.P27P 0.68 TCGA-49-AAR9-01 12 56495322 56495322 C T ERBB3 Missense_Mutation p.S1171F 0.48 deleterious(0.03) benign(0.321) TCGA-49-AAR9-01 12 57587066 57587066 G A LRP1 Missense_Mutation p.D2555N 0.52 probably_damaging(0.991) TCGA-49-AAR9-01 12 57881756 57881756 G T MARS 5'UTR 0.35 TCGA-49-AAR9-01 12 6030418 6030418 G T ANO2 Silent p.R104R 0.14 TCGA-49-AAR9-01 12 64383708 64383708 G T SRGAP1 Missense_Mutation p.L94F 0.23 tolerated(0.07) probably_damaging(0.981) TCGA-49-AAR9-01 12 64815218 64815218 A G XPOT Silent p.G349G 0.18 TCGA-49-AAR9-01 12 65564235 65564235 A T LEMD3 Nonsense_Mutation p.R287* 0.26 TCGA-49-AAR9-01 12 68646400 68646400 G C IL22 Missense_Mutation p.Q94E 0.29 tolerated(0.21) benign(0.016) TCGA-49-AAR9-01 12 69127246 69127246 G C NUP107 Missense_Mutation p.E706Q 0.20 tolerated(0.07) possibly_damaging(0.693) TCGA-49-AAR9-01 12 70974880 70974880 G T PTPRB Silent p.S838S 0.25 TCGA-49-AAR9-01 12 75884200 75884200 T C GLIPR1 Silent p.D145D 0.57 TCGA-49-AAR9-01 12 77440087 77440087 T A E2F7 Missense_Mutation p.Y187F 0.43 deleterious(0) probably_damaging(0.999) TCGA-49-AAR9-01 12 78511901 78511901 G C NAV3 Missense_Mutation p.G955A 0.57 tolerated(0.56) benign(0.003) TCGA-49-AAR9-01 12 81111241 81111241 C G MYF5 Missense_Mutation p.S133R 0.32 deleterious(0.05) probably_damaging(0.999) TCGA-49-AAR9-01 12 81719568 81719568 C A PPFIA2 Missense_Mutation p.R877I 0.42 deleterious(0) benign(0.31) TCGA-49-AAR9-01 12 8212557 8212557 C A C3AR1 Missense_Mutation p.L75F 0.33 deleterious(0) probably_damaging(0.997) TCGA-49-AAR9-01 12 8328517 8328517 C A ZNF705A Missense_Mutation p.D99E 0.05 deleterious(0.02) possibly_damaging(0.84) TCGA-49-AAR9-01 12 85450577 85450577 G T LRRIQ1 Missense_Mutation p.G669V 0.21 tolerated(0.09) benign(0.025) TCGA-49-AAR9-01 12 85638757 85638757 G C LRRIQ1 3'UTR 0.27 TCGA-49-AAR9-01 12 86199482 86199482 C T RASSF9 Silent p.A102A 0.22 TCGA-49-AAR9-01 12 86272222 86272222 C A NTS Missense_Mutation p.H79N 0.31 tolerated(0.48) benign(0.023) TCGA-49-AAR9-01 12 91502323 91502323 G T LUM Missense_Mutation p.T145N 0.19 tolerated(0.52) benign(0.014) TCGA-49-AAR9-01 12 9264808 9264808 C G A2M Splice_Site p.X144_splice 0.39 TCGA-49-AAR9-01 12 9333588 9333588 A G PZP Silent p.S610S 0.16 TCGA-49-AAR9-01 12 94244065 94244065 G T CRADD 3'UTR 0.53 TCGA-49-AAR9-01 13 102359225 102359225 G T ITGBL1 Missense_Mutation p.A418S 0.47 tolerated(0.35) benign(0.036) TCGA-49-AAR9-01 13 103338571 103338571 A T METTL21C Missense_Mutation p.L202Q 0.58 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 13 115030631 115030631 G C CDC16 Missense_Mutation p.G507R 0.58 deleterious(0) benign(0.295) TCGA-49-AAR9-01 13 26129180 26129180 T A ATP8A2 Missense_Mutation p.S413T 0.50 deleterious(0) probably_damaging(0.999) TCGA-49-AAR9-01 13 26129190 26129190 A C ATP8A2 Missense_Mutation p.N416T 0.51 deleterious(0.01) probably_damaging(0.999) TCGA-49-AAR9-01 13 38172925 38172925 A C POSTN 5'UTR 0.57 TCGA-49-AAR9-01 13 51918493 51918493 C T SERPINE3 Missense_Mutation p.T121M 0.33 tolerated(0.34) benign(0.223) TCGA-49-AAR9-01 13 52971508 52971508 G T THSD1 Missense_Mutation p.L294M 0.61 deleterious(0.03) possibly_damaging(0.606) TCGA-49-AAR9-01 13 99362010 99362010 G A SLC15A1 Missense_Mutation p.P322S 0.10 deleterious(0) probably_damaging(0.951) TCGA-49-AAR9-01 14 101200750 101200750 C A DLK1 Nonsense_Mutation p.C223* 0.31 TCGA-49-AAR9-01 14 104508499 104508499 G T TDRD9 Missense_Mutation p.D1317Y 0.31 deleterious(0) benign(0.197) TCGA-49-AAR9-01 14 105617652 105617652 G A JAG2 Missense_Mutation p.P412L 0.55 deleterious(0.04) probably_damaging(1) TCGA-49-AAR9-01 14 106207826 106207826 A T IGHG1 Missense_Mutation p.L326Q 0.28 tolerated(0.5) benign(0.001) TCGA-49-AAR9-01 14 106207827 106207827 G T IGHG1 Missense_Mutation p.L326M 0.31 tolerated(0.07) benign(0.032) TCGA-49-AAR9-01 14 106208128 106208128 C G IGHG1 Missense_Mutation p.Q225H 0.23 deleterious(0.02) possibly_damaging(0.796) TCGA-49-AAR9-01 14 106405659 106405659 C A IGHV6-1 Missense_Mutation p.Q105H 0.38 deleterious(0.02) benign(0.01) TCGA-49-AAR9-01 14 20215702 20215702 T C OR4Q3 Missense_Mutation p.V39A 0.40 deleterious(0.01) benign(0.049) TCGA-49-AAR9-01 14 20841731 20841731 C A TEP1 Missense_Mutation p.G2206W 0.37 deleterious(0) probably_damaging(0.997) TCGA-49-AAR9-01 14 24525831 24525831 G A LRRC16B Missense_Mutation p.G289D 0.51 deleterious(0) probably_damaging(0.922) TCGA-49-AAR9-01 14 24800479 24800479 C T ADCY4 Silent p.Q251Q 0.40 TCGA-49-AAR9-01 14 30093446 30093446 C A PRKD1 Missense_Mutation p.G606V 0.27 deleterious(0) probably_damaging(0.98) TCGA-49-AAR9-01 14 39304867 39304867 G C LINC00639 RNA 0.50 TCGA-49-AAR9-01 14 39782630 39782630 A T CTAGE5 Missense_Mutation p.E432V 0.29 deleterious(0) probably_damaging(0.915) TCGA-49-AAR9-01 14 39796202 39796203 CG T CTAGE5 Frame_Shift_Del p.R608Lfs*3 0.25 TCGA-49-AAR9-01 14 39819370 39819370 C - CTAGE5 Frame_Shift_Del p.P779Hfs*13 0.32 TCGA-49-AAR9-01 14 50647400 50647400 C A SOS2 Nonsense_Mutation p.E287* 0.33 TCGA-49-AAR9-01 14 52781575 52781575 G T PTGER2 Silent p.A103A 0.22 TCGA-49-AAR9-01 14 52781755 52781755 C A PTGER2 Silent p.V163V 0.38 TCGA-49-AAR9-01 14 56094702 56094702 G T KTN1 Nonsense_Mutation p.E346* 0.41 TCGA-49-AAR9-01 14 57858351 57858351 G T NAA30 Missense_Mutation p.D226Y 0.36 deleterious(0.03) benign(0.298) TCGA-49-AAR9-01 14 58604729 58604729 G A C14orf37 Silent p.L450L 0.29 TCGA-49-AAR9-01 14 60921818 60921818 T C C14orf39 Silent p.E468E 0.21 TCGA-49-AAR9-01 14 65392786 65392786 G T CHURC1-FNTB Missense_Mutation p.M79I 0.34 tolerated(0.48) benign(0.002) TCGA-49-AAR9-01 14 69345187 69345187 C A ACTN1 Missense_Mutation p.M805I 0.34 tolerated_low_confidence(0.21) benign(0.001) TCGA-49-AAR9-01 14 70477625 70477625 G C SMOC1 Silent p.L273L 0.28 TCGA-49-AAR9-01 14 70713853 70713853 T A ADAM21P1 RNA 0.28 TCGA-49-AAR9-01 14 79434678 79434678 G T NRXN3 Missense_Mutation p.R671L 0.53 deleterious(0.01) possibly_damaging(0.818) TCGA-49-AAR9-01 14 81743463 81743463 C A STON2 Missense_Mutation p.R731L 0.22 deleterious(0) possibly_damaging(0.87) TCGA-49-AAR9-01 14 88406326 88406326 C G GALC Splice_Site p.X612_splice 0.21 TCGA-49-AAR9-01 14 92249385 92249385 G A TC2N 3'UTR 0.25 TCGA-49-AAR9-01 15 101589853 101589853 G T LRRK1 Nonsense_Mutation p.E1102* 0.23 TCGA-49-AAR9-01 15 102291759 102291759 G T DNM1P47 RNA 0.33 TCGA-49-AAR9-01 15 22368696 22368696 G A OR4M2 Missense_Mutation p.G41R 0.13 deleterious(0) possibly_damaging(0.603) TCGA-49-AAR9-01 15 22382760 22382760 C A OR4N4 Silent p.G96G 0.11 TCGA-49-AAR9-01 15 22383099 22383099 G A OR4N4 Silent p.L209L 0.13 TCGA-49-AAR9-01 15 22383101 22383101 G T OR4N4 Missense_Mutation p.C210F 0.13 deleterious(0) possibly_damaging(0.893) TCGA-49-AAR9-01 15 23932101 23932101 C A NDN Silent p.P88P 0.38 TCGA-49-AAR9-01 15 24921105 24921105 G T NPAP1 Missense_Mutation p.D31Y 0.73 deleterious(0.02) probably_damaging(0.934) TCGA-49-AAR9-01 15 25473955 25473955 G T SNORD115-33 5'Flank 0.58 TCGA-49-AAR9-01 15 34355008 34355008 C A CHRM5 Silent p.V30V 0.36 TCGA-49-AAR9-01 15 40660482 40660482 C A DISP2 Silent p.V723V 0.50 TCGA-49-AAR9-01 15 43483674 43483674 G T CCNDBP1 Missense_Mutation p.D221Y 0.34 deleterious(0.01) probably_damaging(0.968) TCGA-49-AAR9-01 15 43990260 43990260 C A CKMT1A Missense_Mutation p.R309S 0.36 deleterious(0.01) possibly_damaging(0.713) TCGA-49-AAR9-01 15 44783083 44783083 A G CTDSPL2 Missense_Mutation p.T193A 0.26 tolerated(0.31) benign(0.002) TCGA-49-AAR9-01 15 44944067 44944067 C A SPG11 Missense_Mutation p.A360S 0.28 tolerated(0.76) benign(0.028) TCGA-49-AAR9-01 15 45059731 45059731 A T TRIM69 Missense_Mutation p.T422S 0.39 tolerated(0.27) benign(0.155) TCGA-49-AAR9-01 15 48760727 48760727 C A FBN1 Silent p.V1488V 0.31 TCGA-49-AAR9-01 15 55838288 55838288 T A PYGO1 Missense_Mutation p.D398V 0.27 deleterious(0.04) benign(0.343) TCGA-49-AAR9-01 15 62221886 62221886 G A VPS13C Nonsense_Mutation p.Q2034* 0.18 TCGA-49-AAR9-01 15 63069108 63069108 A T TLN2 Missense_Mutation p.K1838M 0.48 deleterious(0.02) benign(0.028) TCGA-49-AAR9-01 15 64005683 64005683 G T HERC1 Silent p.S1444S 0.21 TCGA-49-AAR9-01 15 66007912 66007912 C A DENND4A Missense_Mutation p.M619I 0.45 deleterious(0.01) possibly_damaging(0.771) TCGA-49-AAR9-01 15 67473645 67473645 A C SMAD3 Missense_Mutation p.Q242P 0.22 tolerated(0.2) possibly_damaging(0.711) TCGA-49-AAR9-01 15 73617657 73617657 T C HCN4 Silent p.L573L 0.56 TCGA-49-AAR9-01 15 75982900 75982900 C A CSPG4 Missense_Mutation p.C169F 0.45 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 15 78568034 78568034 T G DNAJA4 Missense_Mutation p.L310V 0.31 deleterious(0.04) probably_damaging(0.98) TCGA-49-AAR9-01 15 79324557 79324557 G T RASGRF1 Missense_Mutation p.R354S 0.38 tolerated(0.12) possibly_damaging(0.592) TCGA-49-AAR9-01 15 83499561 83499561 G T WHAMM Missense_Mutation p.V618F 0.58 deleterious(0.04) benign(0.406) TCGA-49-AAR9-01 15 97326885 97326885 A C SPATA8 5'UTR 0.48 TCGA-49-AAR9-01 15 98984315 98984315 A T FAM169B Silent p.P148P 0.60 TCGA-49-AAR9-01 16 11836621 11836621 C A TXNDC11 5'UTR 0.69 TCGA-49-AAR9-01 16 14015937 14015937 G T ERCC4 Missense_Mutation p.R86L 0.20 deleterious(0.03) benign(0.217) TCGA-49-AAR9-01 16 14312792 14312792 G T MKL2 Silent p.A210A 0.35 TCGA-49-AAR9-01 16 1555497 1555497 G T TELO2 Silent p.P643P 0.20 TCGA-49-AAR9-01 16 1575279 1575279 C A IFT140 Silent p.S939S 0.16 TCGA-49-AAR9-01 16 20566699 20566699 A T ACSM2B Missense_Mutation p.V163D 0.29 deleterious(0) probably_damaging(0.958) TCGA-49-AAR9-01 16 2094717 2094717 G A NTHL1 Missense_Mutation p.R155W 0.32 deleterious(0) probably_damaging(0.93) TCGA-49-AAR9-01 16 2156195 2156195 T A PKD1 Missense_Mutation p.S2534C 0.50 possibly_damaging(0.897) TCGA-49-AAR9-01 16 2239520 2239520 G A CASKIN1 Missense_Mutation p.P97L 0.33 probably_damaging(0.984) TCGA-49-AAR9-01 16 24135257 24135257 C A PRKCB Silent p.T340T 0.42 TCGA-49-AAR9-01 16 28922225 28922225 C A RABEP2 Missense_Mutation p.R358L 0.41 tolerated(0.06) benign(0.025) TCGA-49-AAR9-01 16 29873993 29873995 CAG AA CDIPT Frame_Shift_Del p.C31Sfs*40 0.37 TCGA-49-AAR9-01 16 3119423 3119423 C T IL32 3'UTR 0.26 TCGA-49-AAR9-01 16 31500071 31500071 C A SLC5A2 Missense_Mutation p.R420S 0.31 deleterious(0.02) benign(0.018) TCGA-49-AAR9-01 16 3586075 3586075 G T CLUAP1 Intron 0.22 TCGA-49-AAR9-01 16 46743478 46743478 C A MYLK3 Missense_Mutation p.Q791H 0.37 deleterious(0) probably_damaging(0.968) TCGA-49-AAR9-01 16 48149474 48149474 G T ABCC12 Missense_Mutation p.A614D 0.29 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 16 55903593 55903593 C T CES5A Missense_Mutation p.A190T 0.31 tolerated(0.07) benign(0.223) TCGA-49-AAR9-01 16 56921839 56921839 C G SLC12A3 Silent p.A727A 0.33 TCGA-49-AAR9-01 16 68265276 68265276 G T ESRP2 Silent p.R506R 0.34 TCGA-49-AAR9-01 16 68901113 68901113 A T TANGO6 Missense_Mutation p.E328D 0.28 deleterious(0.02) possibly_damaging(0.752) TCGA-49-AAR9-01 16 71805086 71805086 T C AP1G1 Missense_Mutation p.K180E 0.36 tolerated(0.14) benign(0.001) TCGA-49-AAR9-01 16 78064666 78064666 T A CLEC3A Silent p.A183A 0.25 TCGA-49-AAR9-01 16 84027929 84027929 C A NECAB2 Missense_Mutation p.H207N 0.17 tolerated(0.5) benign(0.05) TCGA-49-AAR9-01 16 89211799 89211799 C T ACSF3 Silent p.P497P 0.54 TCGA-49-AAR9-01 16 89696828 89696828 G T DPEP1 Nonsense_Mutation p.G4* 0.47 TCGA-49-AAR9-01 17 10399425 10399425 G T MYH1 Missense_Mutation p.L1671M 0.53 tolerated(0.08) probably_damaging(0.962) TCGA-49-AAR9-01 17 10533504 10533504 G C MYH3 Missense_Mutation p.L1823V 0.51 deleterious(0.04) probably_damaging(0.939) TCGA-49-AAR9-01 17 11696895 11696895 C A DNAH9 Silent p.R2713R 0.51 TCGA-49-AAR9-01 17 15212081 15212081 T A TEKT3 Missense_Mutation p.I386F 0.53 deleterious(0) possibly_damaging(0.892) TCGA-49-AAR9-01 17 18167120 18167120 G A MIEF2 Missense_Mutation p.R147Q 0.58 tolerated(0.31) benign(0.024) TCGA-49-AAR9-01 17 21731274 21731274 C A UBBP4 Intron 0.42 TCGA-49-AAR9-01 17 26603621 26603621 G T AC061975.8 5'Flank 0.53 TCGA-49-AAR9-01 17 34235731 34235731 G T AC015849.16 RNA 0.23 TCGA-49-AAR9-01 17 34869484 34869484 T A MYO19 Missense_Mutation p.R269W 0.32 deleterious(0.03) benign(0.014) TCGA-49-AAR9-01 17 35297955 35297955 C A LHX1 Nonsense_Mutation p.S149* 0.44 TCGA-49-AAR9-01 17 36453203 36453203 G T MRPL45 Missense_Mutation p.W18C 0.36 tolerated_low_confidence(0.1) benign(0.016) TCGA-49-AAR9-01 17 37667826 37667826 C T CDK12 Missense_Mutation p.P904L 0.25 probably_damaging(1) TCGA-49-AAR9-01 17 38974681 38974681 C A KRT10 3'UTR 0.21 TCGA-49-AAR9-01 17 39036132 39036132 A T KRT20 Missense_Mutation p.V284D 0.27 tolerated(0.16) benign(0.009) TCGA-49-AAR9-01 17 39411673 39411673 C A KRTAP9-9 Silent p.T12T 0.36 TCGA-49-AAR9-01 17 39521459 39521459 G A KRT33B Silent p.L282L 0.46 TCGA-49-AAR9-01 17 40475330 40475330 C A STAT3 Missense_Mutation p.D566Y 0.31 deleterious(0) benign(0.217) TCGA-49-AAR9-01 17 41960282 41960282 C A MPP2 Nonsense_Mutation p.G148* 0.36 TCGA-49-AAR9-01 17 43010056 43010056 C G KIF18B Missense_Mutation p.G408A 0.36 tolerated(1) benign(0.005) TCGA-49-AAR9-01 17 43553021 43553021 C A PLEKHM1 Missense_Mutation p.R123L 0.25 deleterious(0) probably_damaging(0.988) TCGA-49-AAR9-01 17 44248821 44248821 T A KANSL1 Missense_Mutation p.N230I 0.32 deleterious(0.02) possibly_damaging(0.773) TCGA-49-AAR9-01 17 46628190 46628190 G T HOXB3 Missense_Mutation p.P268T 0.38 tolerated(0.3) benign(0.058) TCGA-49-AAR9-01 17 47241588 47241588 T C B4GALNT2 Missense_Mutation p.L362P 0.41 tolerated(0.14) possibly_damaging(0.904) TCGA-49-AAR9-01 17 48669450 48669450 G C CACNA1G Silent p.A969A 0.38 TCGA-49-AAR9-01 17 4937333 4937333 G T SLC52A1 Missense_Mutation p.Q151K 0.55 deleterious(0) probably_damaging(0.998) TCGA-49-AAR9-01 17 59861693 59861693 T A BRIP1 Silent p.S522S 0.24 TCGA-49-AAR9-01 17 60045496 60045496 C A MED13 Missense_Mutation p.G1364V 0.50 deleterious(0) probably_damaging(0.989) TCGA-49-AAR9-01 17 60493395 60493395 G T EFCAB3 Missense_Mutation p.G393V 0.47 deleterious(0.02) probably_damaging(0.999) TCGA-49-AAR9-01 17 60768374 60768374 G T MRC2 Missense_Mutation p.L1359F 0.69 tolerated(0.71) possibly_damaging(0.633) TCGA-49-AAR9-01 17 61623346 61623346 G T KCNH6 3'UTR 0.41 TCGA-49-AAR9-01 17 61987876 61987876 T A CSHL1 Missense_Mutation p.E70D 0.52 tolerated(0.3) benign(0) TCGA-49-AAR9-01 17 63530055 63530055 G T AXIN2 Missense_Mutation p.Q794K 0.25 tolerated(0.71) probably_damaging(0.978) TCGA-49-AAR9-01 17 6555620 6555620 C A C17orf100 Silent p.A129A 0.42 TCGA-49-AAR9-01 17 66347817 66347817 G T ARSG Nonsense_Mutation p.G186* 0.34 TCGA-49-AAR9-01 17 67161127 67161127 C A ABCA10 Missense_Mutation p.G1087V 0.41 deleterious(0.05) benign(0.364) TCGA-49-AAR9-01 17 67297279 67297279 C T ABCA5 Splice_Site p.X423_splice 0.36 TCGA-49-AAR9-01 17 70117536 70117536 A G SOX9 Missense_Mutation p.N2D 0.11 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-49-AAR9-01 17 70943998 70943998 G A SLC39A11 Missense_Mutation p.P108L 0.40 deleterious(0.03) benign(0.033) TCGA-49-AAR9-01 17 72868218 72868218 C A FDXR Missense_Mutation p.Q40H 0.30 tolerated(0.14) benign(0.008) TCGA-49-AAR9-01 17 72926573 72926573 T C OTOP2 Silent p.P281P 0.21 TCGA-49-AAR9-01 17 73089740 73089740 G T SLC16A5 Missense_Mutation p.Q3H 0.10 tolerated(0.06) possibly_damaging(0.547) TCGA-49-AAR9-01 17 74035891 74035891 C - SRP68 Frame_Shift_Del p.A594Pfs*46 0.18 TCGA-49-AAR9-01 17 7417512 7417512 G T POLR2A 3'UTR 0.58 TCGA-49-AAR9-01 17 7578235 7578235 T C TP53 Missense_Mutation p.Y205C 0.38 deleterious(0) probably_damaging(0.99) TCGA-49-AAR9-01 17 76458935 76458935 C A DNAH17 Silent p.T3041T 0.44 TCGA-49-AAR9-01 17 77043733 77043733 C A C1QTNF1 Missense_Mutation p.P137T 0.25 tolerated(0.06) possibly_damaging(0.708) TCGA-49-AAR9-01 17 78084567 78084567 C T GAA Silent p.P493P 0.15 TCGA-49-AAR9-01 17 80129584 80129584 C T CCDC57 Silent p.E625E 0.42 TCGA-49-AAR9-01 17 8701001 8701001 C A MFSD6L Nonsense_Mutation p.E480* 0.71 TCGA-49-AAR9-01 18 29340429 29340429 G T SLC25A52 Silent p.R76R 0.37 TCGA-49-AAR9-01 18 29340502 29340502 G A SLC25A52 Silent p.A51A 0.31 TCGA-49-AAR9-01 18 61570316 61570316 G T SERPINB2 Missense_Mutation p.G342V 0.36 deleterious(0) probably_damaging(0.983) TCGA-49-AAR9-01 18 63430228 63430228 G T CDH7 Silent p.V50V 0.32 TCGA-49-AAR9-01 18 63530251 63530251 A T CDH7 Intron 0.33 TCGA-49-AAR9-01 18 64176232 64176232 C A CDH19 Missense_Mutation p.G610W 0.43 deleterious(0.01) probably_damaging(0.992) TCGA-49-AAR9-01 18 67614064 67614064 C A CD226 Silent p.R96R 0.45 TCGA-49-AAR9-01 18 6966260 6966260 C A LAMA1 Silent p.G2312G 0.23 TCGA-49-AAR9-01 18 6975953 6975953 G - LAMA1 Frame_Shift_Del p.L2158Sfs*49 0.28 TCGA-49-AAR9-01 18 72601890 72601890 G T ZNF407 Missense_Mutation p.K1715N 0.33 tolerated(0.06) possibly_damaging(0.875) TCGA-49-AAR9-01 18 72998986 72998986 G T TSHZ1 Missense_Mutation p.D497Y 0.31 deleterious(0) possibly_damaging(0.707) TCGA-49-AAR9-01 18 74091543 74091543 C A ZNF516 Missense_Mutation p.G843W 0.32 deleterious(0.02) benign(0.046) TCGA-49-AAR9-01 18 77475195 77475195 G C CTDP1 Missense_Mutation p.E579Q 0.39 deleterious(0.04) probably_damaging(0.955) TCGA-49-AAR9-01 18 77710898 77710898 A C PQLC1 Missense_Mutation p.L10R 0.50 deleterious(0.01) possibly_damaging(0.643) TCGA-49-AAR9-01 19 10602584 10602584 C A KEAP1 Missense_Mutation p.G332C 0.60 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 19 11123701 11123701 G T SMARCA4 Missense_Mutation p.G784V 0.54 probably_damaging(0.993) TCGA-49-AAR9-01 19 11422865 11422865 G A TSPAN16 Silent p.L218L 0.58 TCGA-49-AAR9-01 19 12461886 12461886 C A ZNF442 Missense_Mutation p.Q171H 0.55 tolerated(1) benign(0.001) TCGA-49-AAR9-01 19 13397638 13397638 A T CACNA1A Missense_Mutation p.S1078T 0.40 benign(0.015) TCGA-49-AAR9-01 19 15131272 15131272 G A CCDC105 Splice_Site p.X226_splice 0.45 TCGA-49-AAR9-01 19 17763441 17763441 C A UNC13A Missense_Mutation p.G480C 0.56 deleterious(0.03) possibly_damaging(0.881) TCGA-49-AAR9-01 19 18330084 18330084 C G PDE4C Missense_Mutation p.R309P 0.65 deleterious(0.03) possibly_damaging(0.608) TCGA-49-AAR9-01 19 19339245 19339245 G T NCAN Missense_Mutation p.G939V 0.61 deleterious(0.05) benign(0.073) TCGA-49-AAR9-01 19 19339363 19339363 G A NCAN Silent p.P978P 0.68 TCGA-49-AAR9-01 19 22574635 22574635 C A ZNF98 Missense_Mutation p.G468C 0.20 deleterious(0.01) probably_damaging(1) TCGA-49-AAR9-01 19 22847750 22847750 G T ZNF492 Missense_Mutation p.G427C 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-49-AAR9-01 19 31039371 31039371 G T ZNF536 Missense_Mutation p.V949F 0.40 tolerated(0.66) benign(0.11) TCGA-49-AAR9-01 19 33106643 33106643 G C ANKRD27 Missense_Mutation p.A699G 0.24 tolerated(0.38) benign(0.027) TCGA-49-AAR9-01 19 33462806 33462806 G A CEP89 5'UTR 0.45 TCGA-49-AAR9-01 19 35790572 35790572 C A MAG Missense_Mutation p.H177Q 0.31 tolerated(0.3) possibly_damaging(0.53) TCGA-49-AAR9-01 19 36255835 36255835 C T C19orf55 Silent p.R208R 0.87 TCGA-49-AAR9-01 19 37367764 37367764 G T ZNF345 Missense_Mutation p.C11F 0.27 tolerated(0.36) benign(0.013) TCGA-49-AAR9-01 19 3778354 3778354 C A MATK Missense_Mutation p.G452C 0.72 deleterious(0.02) possibly_damaging(0.778) TCGA-49-AAR9-01 19 38126552 38126552 C A ZFP30 Missense_Mutation p.C297F 0.24 deleterious(0.02) benign(0.161) TCGA-49-AAR9-01 19 38643486 38643486 G T SIPA1L3 Silent p.T1180T 0.23 TCGA-49-AAR9-01 19 39078154 39078154 G T RYR1 3'Flank 0.77 TCGA-49-AAR9-01 19 40382591 40382591 C A FCGBP Missense_Mutation p.G3432V 0.19 probably_damaging(0.953) TCGA-49-AAR9-01 19 40430555 40430555 C A FCGBP Missense_Mutation p.G463V 0.38 benign(0.014) TCGA-49-AAR9-01 19 41455034 41455034 C T AC092071.1 3'Flank 0.22 TCGA-49-AAR9-01 19 43441222 43441222 G T PSG7 Missense_Mutation p.P3T 0.21 tolerated(0.05) benign(0.037) TCGA-49-AAR9-01 19 44012034 44012034 G T ETHE1 Intron 0.21 TCGA-49-AAR9-01 19 46387518 46387518 C A IRF2BP1 Silent p.L505L 0.26 TCGA-49-AAR9-01 19 47774695 47774695 C T CCDC9 Silent p.A452A 0.26 TCGA-49-AAR9-01 19 48608653 48608653 G A PLA2G4C Silent p.A29A 0.42 TCGA-49-AAR9-01 19 48922535 48922535 C G GRIN2D Missense_Mutation p.L594V 0.25 tolerated(0.14) probably_damaging(0.998) TCGA-49-AAR9-01 19 49003102 49003102 G T LMTK3 Silent p.L437L 0.50 TCGA-49-AAR9-01 19 49448189 49448189 G C DHDH Nonstop_Mutation p.*335Sext*5 0.29 TCGA-49-AAR9-01 19 50474520 50474520 G T SIGLEC16 RNA 0.42 TCGA-49-AAR9-01 19 50940748 50940748 C A MYBPC2 Missense_Mutation p.S161Y 0.27 deleterious(0.02) benign(0.092) TCGA-49-AAR9-01 19 51329970 51329970 G C KLK15 Missense_Mutation p.I175M 0.29 deleterious(0.03) probably_damaging(0.91) TCGA-49-AAR9-01 19 52272163 52272163 C A FPR2 Silent p.S84S 0.34 TCGA-49-AAR9-01 19 53219120 53219120 T A ZNF611 Missense_Mutation p.R10W 0.80 deleterious(0) probably_damaging(0.971) TCGA-49-AAR9-01 19 54410133 54410133 C G PRKCG Missense_Mutation p.P693R 0.23 deleterious_low_confidence(0.02) benign(0.052) TCGA-49-AAR9-01 19 54937893 54937893 T A TTYH1 Missense_Mutation p.C228S 0.77 deleterious(0.01) possibly_damaging(0.892) TCGA-49-AAR9-01 19 55377864 55377864 C G KIR3DL2 Missense_Mutation p.T382R 0.26 tolerated(0.1) benign(0.021) TCGA-49-AAR9-01 19 56693591 56693591 C A GALP Missense_Mutation p.L63I 0.22 deleterious(0.02) benign(0.044) TCGA-49-AAR9-01 19 56701356 56701356 T A ZSCAN5B Missense_Mutation p.Y443F 0.29 tolerated(0.7) benign(0.003) TCGA-49-AAR9-01 19 57036021 57036021 A T ZNF471 Missense_Mutation p.K195N 0.46 deleterious(0.02) benign(0.307) TCGA-49-AAR9-01 19 57889163 57889163 T C ZNF547 Silent p.C273C 0.05 TCGA-49-AAR9-01 19 58499599 58499599 C A ZNF606 Missense_Mutation p.A126S 0.32 tolerated(0.73) benign(0.01) TCGA-49-AAR9-01 19 58512667 58512667 C A ZNF606 Missense_Mutation p.W7C 0.16 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-49-AAR9-01 19 6381018 6381018 C A GTF2F1 Silent p.P376P 0.62 TCGA-49-AAR9-01 19 9048422 9048422 G A MUC16 Missense_Mutation p.T11070I 0.57 benign(0.007) TCGA-49-AAR9-01 19 9074060 9074060 T A MUC16 Silent p.T4462T 0.59 TCGA-49-AAR9-01 19 9213309 9213309 C A OR7G2 Missense_Mutation p.C225F 0.65 tolerated(0.85) benign(0.007) TCGA-49-AAR9-01 1 102270203 102270203 C A OLFM3 Missense_Mutation p.G323V 0.60 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 1 11184674 11184674 C T MTOR Silent p.E2181E 0.24 TCGA-49-AAR9-01 1 114309829 114309829 C A RSBN1 Missense_Mutation p.W609C 0.31 tolerated(0.11) benign(0.056) TCGA-49-AAR9-01 1 114940203 114940203 T C TRIM33 3'UTR 0.56 TCGA-49-AAR9-01 1 118454681 118454681 C A GDAP2 Missense_Mutation p.G165V 0.43 deleterious(0.01) probably_damaging(1) TCGA-49-AAR9-01 1 1190558 1190558 C G UBE2J2 3'UTR 0.22 TCGA-49-AAR9-01 1 120300057 120300057 G T HMGCS2 Silent p.G285G 0.17 TCGA-49-AAR9-01 1 1390862 1390862 G C ATAD3C Missense_Mutation p.S134T 0.34 tolerated(0.11) benign(0.022) TCGA-49-AAR9-01 1 145474524 145474524 G A ANKRD34A Missense_Mutation p.R399Q 0.50 deleterious(0) probably_damaging(0.943) TCGA-49-AAR9-01 1 146055374 146055374 T C NBPF11 Silent p.A137A 0.19 TCGA-49-AAR9-01 1 150938597 150938597 A - CERS2 3'UTR 0.20 TCGA-49-AAR9-01 1 152279831 152279831 T G FLG Silent p.R2511R 0.10 TCGA-49-AAR9-01 1 154296135 154296135 C T AQP10 Missense_Mutation p.A187V 0.30 tolerated(0.1) benign(0.035) TCGA-49-AAR9-01 1 157739696 157739696 C A FCRL2 Missense_Mutation p.R185S 0.28 tolerated(0.67) benign(0.009) TCGA-49-AAR9-01 1 158549104 158549104 G A OR10X1 Missense_Mutation p.H196Y 0.23 deleterious(0.01) probably_damaging(0.974) TCGA-49-AAR9-01 1 158607988 158607988 G T SPTA1 Missense_Mutation p.S1675Y 0.30 deleterious(0.01) probably_damaging(0.989) TCGA-49-AAR9-01 1 158609780 158609780 C G SPTA1 Silent p.L1585L 0.29 TCGA-49-AAR9-01 1 158724751 158724751 A T OR6K6 Missense_Mutation p.H49L 0.24 tolerated(0.28) benign(0.002) TCGA-49-AAR9-01 1 158736262 158736262 G T OR6N1 Missense_Mutation p.L71I 0.24 tolerated(1) benign(0.05) TCGA-49-AAR9-01 1 158912188 158912188 C A PYHIN1 Missense_Mutation p.T334K 0.17 tolerated(1) benign(0.004) TCGA-49-AAR9-01 1 158943543 158943543 C T PYHIN1 Missense_Mutation p.P489L 0.24 possibly_damaging(0.713) TCGA-49-AAR9-01 1 160062945 160062945 G A IGSF8 Nonsense_Mutation p.Q361* 0.29 TCGA-49-AAR9-01 1 160395046 160395046 C G VANGL2 Missense_Mutation p.R482G 0.06 tolerated(0.23) possibly_damaging(0.878) TCGA-49-AAR9-01 1 161953814 161953814 G T OLFML2B Missense_Mutation p.A635D 0.22 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 1 166958580 166958580 C A MAEL 5'UTR 0.21 TCGA-49-AAR9-01 1 167086730 167086730 A T DUSP27 Missense_Mutation p.Q124L 0.65 deleterious(0.02) benign(0.359) TCGA-49-AAR9-01 1 169562872 169562872 G T SELP Missense_Mutation p.A793D 0.19 deleterious(0) possibly_damaging(0.899) TCGA-49-AAR9-01 1 170940990 170940990 G T MROH9 Missense_Mutation p.M194I 0.11 tolerated(0.25) benign(0.044) TCGA-49-AAR9-01 1 175324764 175324764 C A TNR Missense_Mutation p.D1042Y 0.20 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 1 175331940 175331940 G T TNR Silent p.R905R 0.26 TCGA-49-AAR9-01 1 176564566 176564566 G T PAPPA2 Missense_Mutation p.G609V 0.22 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 1 176926856 176926856 G T ASTN1 Missense_Mutation p.F615L 0.22 deleterious(0) probably_damaging(0.923) TCGA-49-AAR9-01 1 177030321 177030321 T G ASTN1 Missense_Mutation p.I122L 0.24 deleterious_low_confidence(0.02) probably_damaging(0.958) TCGA-49-AAR9-01 1 181701977 181701977 C A CACNA1E Silent p.R919R 0.26 TCGA-49-AAR9-01 1 184787826 184787826 C A FAM129A Silent p.V373V 0.24 TCGA-49-AAR9-01 1 185959533 185959533 C A HMCN1 Missense_Mutation p.T1112N 0.57 probably_damaging(0.997) TCGA-49-AAR9-01 1 186057873 186057873 T G HMCN1 Missense_Mutation p.F3238C 0.63 benign(0.421) TCGA-49-AAR9-01 1 186084418 186084418 C A HMCN1 Silent p.T3811T 0.19 TCGA-49-AAR9-01 1 186141155 186141155 C A HMCN1 Missense_Mutation p.Q5236K 0.27 probably_damaging(0.952) TCGA-49-AAR9-01 1 186277433 186277433 C A PRG4 Missense_Mutation p.T861N 0.25 unknown(0) TCGA-49-AAR9-01 1 186283839 186283839 G A TPR Missense_Mutation p.P2320S 0.50 benign(0.405) TCGA-49-AAR9-01 1 186283840 186283840 T A TPR Missense_Mutation p.Q2319H 0.50 benign(0.011) TCGA-49-AAR9-01 1 1961656 1961656 C A GABRD Missense_Mutation p.R432S 0.42 deleterious(0) probably_damaging(0.994) TCGA-49-AAR9-01 1 196714965 196714965 G T CFH Missense_Mutation p.G1110V 0.17 tolerated(0.09) probably_damaging(0.985) TCGA-49-AAR9-01 1 197102624 197102624 G A ASPM Missense_Mutation p.R759W 0.45 deleterious(0) probably_damaging(0.915) TCGA-49-AAR9-01 1 201012443 201012443 T A CACNA1S Missense_Mutation p.N1672Y 0.21 tolerated_low_confidence(0.06) possibly_damaging(0.613) TCGA-49-AAR9-01 1 201063007 201063007 C A CACNA1S Intron 0.25 TCGA-49-AAR9-01 1 201195184 201195184 C T IGFN1 Silent p.A3573A 0.36 TCGA-49-AAR9-01 1 201356193 201356193 C G LAD1 Missense_Mutation p.R99P 0.19 deleterious(0.01) probably_damaging(0.969) TCGA-49-AAR9-01 1 203144858 203144858 C A MYBPH Missense_Mutation p.G9V 0.19 deleterious_low_confidence(0.03) benign(0.001) TCGA-49-AAR9-01 1 204425171 204425171 C A PIK3C2B Missense_Mutation p.V586L 0.22 tolerated(0.25) benign(0.048) TCGA-49-AAR9-01 1 20879559 20879559 G T FAM43B Silent p.S31S 0.67 TCGA-49-AAR9-01 1 209800795 209800795 G A LAMB3 Missense_Mutation p.A473V 0.17 tolerated(0.05) possibly_damaging(0.824) TCGA-49-AAR9-01 1 209935926 209935926 C A TRAF3IP3 Missense_Mutation p.L138M 0.20 tolerated(0.09) possibly_damaging(0.554) TCGA-49-AAR9-01 1 211307393 211307393 C A KCNH1 5'Flank 0.24 TCGA-49-AAR9-01 1 213178540 213178540 C A ANGEL2 Silent p.T323T 0.33 TCGA-49-AAR9-01 1 216348679 216348679 G T USH2A Silent p.T1514T 0.34 TCGA-49-AAR9-01 1 220752740 220752741 - A MARK1 Frame_Shift_Ins p.S34Vfs*3 0.21 TCGA-49-AAR9-01 1 222717021 222717021 C A HHIPL2 Missense_Mutation p.A278S 0.36 tolerated(0.05) probably_damaging(0.982) TCGA-49-AAR9-01 1 227923162 227923162 C G SNAP47 Missense_Mutation p.R18G 0.31 deleterious_low_confidence(0) benign(0.042) TCGA-49-AAR9-01 1 228494303 228494303 G T OBSCN Missense_Mutation p.G4921C 0.27 probably_damaging(0.997) TCGA-49-AAR9-01 1 229568565 229568565 T A ACTA1 Missense_Mutation p.R64S 0.40 deleterious_low_confidence(0.01) probably_damaging(0.936) TCGA-49-AAR9-01 1 229738319 229738319 C A TAF5L Missense_Mutation p.V199L 0.47 deleterious(0.01) possibly_damaging(0.644) TCGA-49-AAR9-01 1 232534888 232534888 G A SIPA1L2 Silent p.I1718I 0.12 TCGA-49-AAR9-01 1 233514682 233514682 T A MLK4 Missense_Mutation p.C644S 0.37 tolerated(0.62) benign(0.003) TCGA-49-AAR9-01 1 236157078 236157078 G T NID1 Missense_Mutation p.F874L 0.38 deleterious(0.01) benign(0.17) TCGA-49-AAR9-01 1 236205347 236205347 G T NID1 Missense_Mutation p.S333Y 0.42 deleterious(0.04) benign(0.009) TCGA-49-AAR9-01 1 236572514 236572514 A T EDARADD Splice_Site p.X21_splice 0.36 TCGA-49-AAR9-01 1 236645788 236645788 C A EDARADD Missense_Mutation p.P163T 0.39 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 1 236907947 236907947 A T ACTN2 Missense_Mutation p.Q426L 0.16 deleterious(0.05) benign(0.011) TCGA-49-AAR9-01 1 237951322 237951322 G A RYR2 Missense_Mutation p.E4455K 0.17 benign(0.005) TCGA-49-AAR9-01 1 237965157 237965157 C A RYR2 Missense_Mutation p.L4698M 0.18 possibly_damaging(0.86) TCGA-49-AAR9-01 1 238048528 238048528 G A ZP4 Silent p.R416R 0.29 TCGA-49-AAR9-01 1 238090421 238090421 C A RP11-193H5.1 RNA 0.24 TCGA-49-AAR9-01 1 244528053 244528053 G A C1orf100 Silent p.P17P 0.42 TCGA-49-AAR9-01 1 244587310 244587310 G A ADSS Missense_Mutation p.R176W 0.12 deleterious(0) probably_damaging(0.998) TCGA-49-AAR9-01 1 245927387 245927387 G T SMYD3 Missense_Mutation p.L381I 0.26 tolerated(0.37) benign(0.134) TCGA-49-AAR9-01 1 246797302 246797302 A T CNST Missense_Mutation p.Q231H 0.20 deleterious(0) probably_damaging(0.999) TCGA-49-AAR9-01 1 247004160 247004160 C G AHCTF1 Missense_Mutation p.R2259T 0.05 deleterious(0.01) possibly_damaging(0.809) TCGA-49-AAR9-01 1 247607303 247607303 G T NLRP3 Missense_Mutation p.C900F 0.23 deleterious(0.02) possibly_damaging(0.756) TCGA-49-AAR9-01 1 247614960 247614960 G T OR2B11 Missense_Mutation p.H109N 0.32 deleterious(0.02) benign(0.272) TCGA-49-AAR9-01 1 247654906 247654906 G T OR2W5 RNA 0.17 TCGA-49-AAR9-01 1 247752160 247752160 C A OR2G2 Missense_Mutation p.L167M 0.41 tolerated(0.35) probably_damaging(0.99) TCGA-49-AAR9-01 1 247875187 247875187 T A OR6F1 Missense_Mutation p.T291S 0.21 tolerated(0.33) possibly_damaging(0.682) TCGA-49-AAR9-01 1 247875822 247875822 G T OR6F1 Missense_Mutation p.P79H 0.22 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 1 247921002 247921002 C A OR1C1 Missense_Mutation p.R236I 0.24 deleterious(0) possibly_damaging(0.761) TCGA-49-AAR9-01 1 24795647 24795647 G A NIPAL3 Missense_Mutation p.R398Q 0.69 tolerated_low_confidence(0.27) benign(0.022) TCGA-49-AAR9-01 1 248039361 248039361 G T TRIM58 Missense_Mutation p.G344V 0.36 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 1 248262881 248262881 G T OR2L13 Missense_Mutation p.M68I 0.23 tolerated(0.36) benign(0.018) TCGA-49-AAR9-01 1 248309226 248309226 C T OR2M5 Silent p.Y259Y 0.22 TCGA-49-AAR9-01 1 248436860 248436860 C A OR2T33 Missense_Mutation p.G86V 0.14 deleterious(0) possibly_damaging(0.781) TCGA-49-AAR9-01 1 248512613 248512613 C T OR14C36 Silent p.I179I 0.19 TCGA-49-AAR9-01 1 248525514 248525514 G C OR2T4 Missense_Mutation p.C211S 0.23 deleterious(0) probably_damaging(0.999) TCGA-49-AAR9-01 1 248570269 248570269 C A OR2T1 Missense_Mutation p.S325Y 0.36 deleterious(0.01) probably_damaging(0.99) TCGA-49-AAR9-01 1 248570353 248570353 G T OR2T1 Missense_Mutation p.R353M 0.22 deleterious(0.01) probably_damaging(0.928) TCGA-49-AAR9-01 1 249141999 249141999 G A ZNF672 Missense_Mutation p.A176T 0.56 tolerated(0.1) benign(0.008) TCGA-49-AAR9-01 1 34100908 34100908 C A CSMD2 Silent p.V1624V 0.45 TCGA-49-AAR9-01 1 35916043 35916043 T C KIAA0319L Silent p.A710A 0.40 TCGA-49-AAR9-01 1 38053054 38053054 T C GNL2 Missense_Mutation p.T143A 0.33 deleterious(0.02) possibly_damaging(0.898) TCGA-49-AAR9-01 1 46088444 46088444 C A CCDC17 Missense_Mutation p.G240V 0.35 deleterious(0) probably_damaging(0.932) TCGA-49-AAR9-01 1 6206845 6206845 C A CHD5 Silent p.G490G 0.38 TCGA-49-AAR9-01 1 62574115 62574115 A G INADL Missense_Mutation p.I1462V 0.58 tolerated(0.33) benign(0.051) TCGA-49-AAR9-01 1 63070371 63070371 A T ANGPTL3 Silent p.A422A 0.25 TCGA-49-AAR9-01 1 66036245 66036245 T A LEPR Missense_Mutation p.Y44N 0.32 tolerated(0.29) benign(0.045) TCGA-49-AAR9-01 1 67266896 67266896 G A INSL5 Silent p.G3G 0.43 TCGA-49-AAR9-01 1 78189029 78189029 A G USP33 Missense_Mutation p.L490P 0.09 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 1 79101116 79101116 G C IFI44L Missense_Mutation p.G273A 0.34 deleterious(0) probably_damaging(0.995) TCGA-49-AAR9-01 1 84878080 84878080 C T DNASE2B Missense_Mutation p.P199L 0.42 deleterious(0) probably_damaging(0.999) TCGA-49-AAR9-01 1 85563300 85563300 A T WDR63 Nonsense_Mutation p.K438* 0.30 TCGA-49-AAR9-01 1 91817152 91817152 C G HFM1 Missense_Mutation p.D676H 0.67 deleterious(0.02) benign(0.003) TCGA-49-AAR9-01 1 93300458 93300458 G A RPL5 Silent p.L104L 0.41 TCGA-49-AAR9-01 20 14307640 14307640 C A FLRT3 Missense_Mutation p.W171C 0.25 tolerated(0.19) benign(0.139) TCGA-49-AAR9-01 20 1616135 1616135 C A SIRPG Nonsense_Mutation p.E287* 0.35 TCGA-49-AAR9-01 20 17617368 17617368 C T RRBP1 Missense_Mutation p.A298T 0.12 tolerated(0.2) possibly_damaging(0.682) TCGA-49-AAR9-01 20 1961435 1961435 C A PDYN Missense_Mutation p.G100V 0.31 tolerated(0.06) benign(0.098) TCGA-49-AAR9-01 20 23016397 23016397 G A SSTR4 Missense_Mutation p.D93N 0.65 deleterious(0) probably_damaging(0.999) TCGA-49-AAR9-01 20 23807121 23807121 A T CST2 Silent p.T59T 0.31 TCGA-49-AAR9-01 20 2638639 2638639 G A NOP56 Missense_Mutation p.G495E 0.33 tolerated(0.13) probably_damaging(0.931) TCGA-49-AAR9-01 20 30072005 30072005 G T REM1 Missense_Mutation p.E223D 0.27 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 20 3199278 3199278 G A ITPA Silent p.S137S 0.44 TCGA-49-AAR9-01 20 32881905 32881905 C A AHCY Missense_Mutation p.A93S 0.29 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-49-AAR9-01 20 34778674 34778674 C A EPB41L1 Missense_Mutation p.R419S 0.12 deleterious(0) probably_damaging(0.999) TCGA-49-AAR9-01 20 41100943 41100943 C G PTPRT Missense_Mutation p.M471I 0.25 tolerated(0.08) benign(0.067) TCGA-49-AAR9-01 20 42343776 42343776 G A MYBL2 Silent p.P609P 0.18 TCGA-49-AAR9-01 20 43955842 43955842 C A SDC4 3'UTR 0.39 TCGA-49-AAR9-01 20 44505409 44505409 G T ZSWIM3 Missense_Mutation p.R71L 0.19 tolerated(0.25) benign(0.001) TCGA-49-AAR9-01 20 44673773 44673773 C T SLC12A5 Silent p.F544F 0.27 TCGA-49-AAR9-01 20 46365660 46365660 G T SULF2 Silent p.R68R 0.68 TCGA-49-AAR9-01 20 50140411 50140411 C A NFATC2 Missense_Mutation p.Q123H 0.27 tolerated(0.8) benign(0.002) TCGA-49-AAR9-01 20 50140412 50140412 T A NFATC2 Missense_Mutation p.Q123L 0.26 deleterious(0.01) benign(0.003) TCGA-49-AAR9-01 20 50705002 50705002 T C ZFP64 Missense_Mutation p.Y189C 0.30 deleterious(0) probably_damaging(0.999) TCGA-49-AAR9-01 20 51871331 51871331 C A TSHZ2 Missense_Mutation p.P445Q 0.69 deleterious(0.03) benign(0.011) TCGA-49-AAR9-01 20 54573602 54573602 G T CBLN4 3'UTR 0.25 TCGA-49-AAR9-01 20 54972783 54972783 G A CSTF1 Silent p.T177T 0.30 TCGA-49-AAR9-01 20 61143688 61143688 G C C20orf166 5'Flank 0.12 TCGA-49-AAR9-01 20 61458610 61458610 G A COL9A3 Silent p.R270R 0.75 TCGA-49-AAR9-01 20 61637644 61637644 C A BHLHE23 Silent p.L145L 0.14 TCGA-49-AAR9-01 20 61981062 61981062 C T CHRNA4 Silent p.A567A 0.07 TCGA-49-AAR9-01 20 7894922 7894922 C A HAO1 Missense_Mutation p.R145L 0.23 deleterious(0.03) benign(0.006) TCGA-49-AAR9-01 20 8696852 8696852 G C PLCB1 Intron 0.68 TCGA-49-AAR9-01 20 9546792 9546792 G A PAK7 Silent p.T410T 0.22 TCGA-49-AAR9-01 21 43411924 43411924 C T ZBTB21 Missense_Mutation p.E761K 0.72 tolerated(0.44) benign(0.047) TCGA-49-AAR9-01 21 46066943 46066943 G A KRTAP10-11 Missense_Mutation p.V190M 0.60 tolerated(0.08) benign(0.036) TCGA-49-AAR9-01 22 17443765 17443765 G A GAB4 Missense_Mutation p.P528L 0.57 deleterious(0) benign(0.001) TCGA-49-AAR9-01 22 17443766 17443766 G T GAB4 Missense_Mutation p.P528T 0.58 deleterious(0.02) benign(0.002) TCGA-49-AAR9-01 22 26706636 26706636 G T SEZ6L Missense_Mutation p.R505S 0.64 deleterious(0.01) probably_damaging(1) TCGA-49-AAR9-01 22 28192880 28192880 A C MN1 Missense_Mutation p.S1218A 0.53 benign(0.204) TCGA-49-AAR9-01 22 32464012 32464012 G T SLC5A1 Missense_Mutation p.G124V 0.68 deleterious(0) probably_damaging(0.997) TCGA-49-AAR9-01 22 38308394 38308394 G T MICALL1 Missense_Mutation p.A78S 0.64 deleterious(0.02) probably_damaging(0.962) TCGA-49-AAR9-01 22 44283529 44283529 T C PNPLA5 Silent p.V235V 0.69 TCGA-49-AAR9-01 22 46776811 46776811 G T CELSR1 Missense_Mutation p.T2377K 0.28 deleterious(0.01) possibly_damaging(0.791) TCGA-49-AAR9-01 2 11052609 11052609 C A KCNF1 Silent p.A19A 0.67 TCGA-49-AAR9-01 2 118753862 118753862 T A CCDC93 Missense_Mutation p.Q147L 0.28 deleterious(0.02) possibly_damaging(0.568) TCGA-49-AAR9-01 2 119752109 119752109 T C MARCO 3'UTR 0.22 TCGA-49-AAR9-01 2 121743881 121743881 T A GLI2 Missense_Mutation p.S662T 0.69 deleterious(0) probably_damaging(0.977) TCGA-49-AAR9-01 2 1241722 1241722 C G SNTG2 Missense_Mutation p.T261R 0.41 deleterious(0.03) possibly_damaging(0.822) TCGA-49-AAR9-01 2 128367532 128367532 C A MYO7B Missense_Mutation p.H1045N 0.70 tolerated(0.09) benign(0.075) TCGA-49-AAR9-01 2 133542350 133542350 G T NCKAP5 Silent p.P678P 0.38 TCGA-49-AAR9-01 2 133542608 133542608 G A NCKAP5 Silent p.H592H 0.40 TCGA-49-AAR9-01 2 135749119 135749119 G T MAP3K19 Silent p.G202G 0.30 TCGA-49-AAR9-01 2 141130645 141130645 G T LRP1B Missense_Mutation p.P3567Q 0.36 benign(0) TCGA-49-AAR9-01 2 15676615 15676615 T A NBAS Nonsense_Mutation p.K192* 0.23 TCGA-49-AAR9-01 2 157185982 157185982 G T NR4A2 Missense_Mutation p.H239Q 0.32 tolerated(0.6) possibly_damaging(0.839) TCGA-49-AAR9-01 2 166223757 166223757 T A SCN2A Missense_Mutation p.I1184K 0.47 deleterious(0) benign(0.104) TCGA-49-AAR9-01 2 166904247 166904247 C G SCN1A Missense_Mutation p.A354P 0.76 deleterious(0) possibly_damaging(0.635) TCGA-49-AAR9-01 2 167108336 167108336 T A SCN9A Missense_Mutation p.E1126D 0.31 tolerated(0.12) benign(0.154) TCGA-49-AAR9-01 2 16743393 16743393 A C FAM49A Missense_Mutation p.S105R 0.25 tolerated(0.55) benign(0.099) TCGA-49-AAR9-01 2 173420985 173420985 C A PDK1 Missense_Mutation p.P36Q 0.50 deleterious_low_confidence(0.04) unknown(0) TCGA-49-AAR9-01 2 176973925 176973925 A T HOXD11 3'UTR 0.29 TCGA-49-AAR9-01 2 177037051 177037051 G T HOXD3 3'UTR 0.47 TCGA-49-AAR9-01 2 179454340 179454340 A G TTN Silent p.H20704H 0.36 TCGA-49-AAR9-01 2 179583505 179583505 T A TTN Missense_Mutation p.Q8141L 0.44 TCGA-49-AAR9-01 2 179634851 179634851 T A TTN Silent p.S2859S 0.41 TCGA-49-AAR9-01 2 185800895 185800895 C T ZNF804A Missense_Mutation p.H258Y 0.44 deleterious(0.01) probably_damaging(0.954) TCGA-49-AAR9-01 2 188223846 188223846 T A CALCRL Missense_Mutation p.S285C 0.44 deleterious(0) possibly_damaging(0.838) TCGA-49-AAR9-01 2 188247988 188247988 A T CALCRL Silent p.I32I 0.32 TCGA-49-AAR9-01 2 1982990 1982990 G A MYT1L Silent p.T33T 0.33 TCGA-49-AAR9-01 2 206641000 206641000 C A NRP2 Intron 0.72 TCGA-49-AAR9-01 2 210561733 210561733 A T MAP2 Missense_Mutation p.T1494S 0.36 deleterious(0.03) possibly_damaging(0.842) TCGA-49-AAR9-01 2 212251659 212251659 C A ERBB4 Missense_Mutation p.V1134L 0.33 tolerated(0.68) benign(0.077) TCGA-49-AAR9-01 2 21230295 21230295 C A APOB Missense_Mutation p.D3149Y 0.26 possibly_damaging(0.886) TCGA-49-AAR9-01 2 212589851 212589851 G A ERBB4 Missense_Mutation p.H231Y 0.36 deleterious(0.01) probably_damaging(0.993) TCGA-49-AAR9-01 2 220026659 220026659 C A SLC23A3 Missense_Mutation p.S610I 0.74 deleterious_low_confidence(0) benign(0.1) TCGA-49-AAR9-01 2 220326736 220326736 G T SPEG Missense_Mutation p.R858L 0.30 benign(0.003) TCGA-49-AAR9-01 2 233759341 233759341 A T NGEF Intron 0.19 TCGA-49-AAR9-01 2 242814854 242814854 G T CXXC11 Nonsense_Mutation p.E383* 0.33 TCGA-49-AAR9-01 2 27303657 27303657 G A EMILIN1 Missense_Mutation p.M116I 0.13 possibly_damaging(0.869) TCGA-49-AAR9-01 2 275160 275160 C T ACP1 Silent p.A84A 0.17 TCGA-49-AAR9-01 2 27695148 27695148 T A IFT172 Missense_Mutation p.H498L 0.55 tolerated(0.05) benign(0.373) TCGA-49-AAR9-01 2 27801940 27801940 T C C2orf16 Missense_Mutation p.L834P 0.36 deleterious(0.03) benign(0.038) TCGA-49-AAR9-01 2 3341835 3341835 C A TSSC1 Missense_Mutation p.S71I 0.61 deleterious(0.03) probably_damaging(0.944) TCGA-49-AAR9-01 2 33487870 33487870 C A LTBP1 Missense_Mutation p.L834M 0.57 tolerated(0.11) benign(0.13) TCGA-49-AAR9-01 2 38302172 38302172 G C CYP1B1 Missense_Mutation p.F120L 0.45 tolerated(0.32) possibly_damaging(0.814) TCGA-49-AAR9-01 2 40656103 40656103 C A SLC8A1 Missense_Mutation p.V440L 0.34 tolerated(0.21) benign(0.07) TCGA-49-AAR9-01 2 44126664 44126664 C A LRPPRC Missense_Mutation p.G1217V 0.19 deleterious(0.02) possibly_damaging(0.564) TCGA-49-AAR9-01 2 48061777 48061777 G A FBXO11 Missense_Mutation p.S292F 0.25 deleterious(0.01) benign(0.276) TCGA-49-AAR9-01 2 49381524 49381524 G T FSHR Missense_Mutation p.F11L 0.15 tolerated(0.65) benign(0.001) TCGA-49-AAR9-01 2 50765484 50765484 G T NRXN1 Missense_Mutation p.P724T 0.22 tolerated(0.06) possibly_damaging(0.811) TCGA-49-AAR9-01 2 50847277 50847277 C A NRXN1 Silent p.T441T 0.21 TCGA-49-AAR9-01 2 54483270 54483270 G T TSPYL6 Missense_Mutation p.P7T 0.24 tolerated_low_confidence(0.92) benign(0.004) TCGA-49-AAR9-01 2 69002442 69002442 G T ARHGAP25 Missense_Mutation p.G51C 0.25 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 2 74479474 74479474 C G SLC4A5 Missense_Mutation p.G437A 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-49-AAR9-01 2 75879322 75879323 TC A MRPL19 Frame_Shift_Del p.F92Lfs*3 0.24 TCGA-49-AAR9-01 2 79878741 79878741 G T CTNNA2 Missense_Mutation p.R20L 0.21 deleterious(0) probably_damaging(0.969) TCGA-49-AAR9-01 2 79878742 79878742 G T CTNNA2 Silent p.R20R 0.21 TCGA-49-AAR9-01 2 80529913 80529913 G T LRRTM1 Missense_Mutation p.S344R 0.26 deleterious(0) benign(0.221) TCGA-49-AAR9-01 2 86790583 86790583 G C CHMP3 Intron 0.44 TCGA-49-AAR9-01 2 89476043 89476043 G T IGKV2-24 Nonsense_Mutation p.C43* 0.23 TCGA-49-AAR9-01 3 101375015 101375015 C A ZBTB11 Missense_Mutation p.Q708H 0.43 tolerated(0.1) benign(0.071) TCGA-49-AAR9-01 3 108172960 108172960 T A MYH15 Missense_Mutation p.Q784H 0.32 tolerated(0.18) benign(0.01) TCGA-49-AAR9-01 3 11070426 11070426 G A SLC6A1 Missense_Mutation p.G362R 0.31 deleterious(0) probably_damaging(0.949) TCGA-49-AAR9-01 3 124215168 124215168 G T KALRN Nonsense_Mutation p.E1613* 0.20 TCGA-49-AAR9-01 3 128694743 128694743 C T KIAA1257 Nonsense_Mutation p.W300* 0.76 TCGA-49-AAR9-01 3 133524830 133524830 G T SRPRB Silent p.A46A 0.80 TCGA-49-AAR9-01 3 13361274 13361274 C A NUP210 Missense_Mutation p.G1791V 0.38 tolerated(0.08) benign(0.017) TCGA-49-AAR9-01 3 137843634 137843634 G T A4GNT Nonsense_Mutation p.Y165* 0.76 TCGA-49-AAR9-01 3 150644518 150644518 G A CLRN1 3'Flank 0.67 TCGA-49-AAR9-01 3 157820474 157820474 C A SHOX2 Missense_Mutation p.R207L 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-49-AAR9-01 3 164908122 164908122 C A SLITRK3 Missense_Mutation p.S166I 0.57 tolerated(0.09) probably_damaging(0.972) TCGA-49-AAR9-01 3 170216486 170216486 C G SLC7A14 Missense_Mutation p.E243D 0.57 tolerated(0.38) benign(0.01) TCGA-49-AAR9-01 3 172499973 172499973 A G ECT2 Missense_Mutation p.I523M 0.27 tolerated(0.68) benign(0.012) TCGA-49-AAR9-01 3 179334771 179334771 G T NDUFB5 Missense_Mutation p.G94V 0.40 deleterious(0) probably_damaging(0.997) TCGA-49-AAR9-01 3 183887949 183887949 G T DVL3 Missense_Mutation p.G552C 0.29 deleterious(0.03) probably_damaging(0.991) TCGA-49-AAR9-01 3 184035504 184035504 G T EIF4G1 Splice_Site p.X116_splice 0.55 TCGA-49-AAR9-01 3 185541000 185541000 A T IGF2BP2 Silent p.G60G 0.36 TCGA-49-AAR9-01 3 186015883 186015883 C A DGKG Nonsense_Mutation p.G94* 0.17 TCGA-49-AAR9-01 3 195594642 195594642 C G TNK2 Missense_Mutation p.A906P 0.59 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-49-AAR9-01 3 3118234 3118234 G A IL5RA Missense_Mutation p.L358F 0.84 tolerated(1) benign(0.004) TCGA-49-AAR9-01 3 35750481 35750481 T C ARPP21 Intron 0.71 TCGA-49-AAR9-01 3 35750482 35750482 A T ARPP21 Intron 0.73 TCGA-49-AAR9-01 3 53381622 53381622 A T DCP1A 5'UTR 0.73 TCGA-49-AAR9-01 3 64601847 64601847 C A ADAMTS9 Splice_Site p.X938_splice 0.47 TCGA-49-AAR9-01 3 65342239 65342239 C A MAGI1 Silent p.R1401R 0.12 TCGA-49-AAR9-01 3 69097101 69097101 C A TMF1 Missense_Mutation p.G252V 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-49-AAR9-01 3 7728103 7728103 C A GRM7 Intron 0.29 TCGA-49-AAR9-01 3 77614133 77614133 G A ROBO2 Missense_Mutation p.V587M 0.52 deleterious(0.01) possibly_damaging(0.774) TCGA-49-AAR9-01 3 93772114 93772114 C T ARL13B 3'UTR 0.76 TCGA-49-AAR9-01 3 96963089 96963089 C A EPHA6 Missense_Mutation p.P522T 0.65 deleterious(0.03) possibly_damaging(0.648) TCGA-49-AAR9-01 3 97251233 97251233 G C EPHA6 Missense_Mutation p.L744F 0.49 deleterious(0) probably_damaging(0.999) TCGA-49-AAR9-01 3 98002223 98002223 T C OR5H2 Silent p.H164H 0.31 TCGA-49-AAR9-01 3 99515015 99515015 A G COL8A1 3'UTR 0.27 TCGA-49-AAR9-01 4 100242524 100242524 G T ADH1B 5'UTR 0.79 TCGA-49-AAR9-01 4 103822350 103822350 A T SLC9B1 Missense_Mutation p.L491Q 0.04 deleterious(0.01) probably_damaging(0.976) TCGA-49-AAR9-01 4 104027425 104027425 C A CENPE Missense_Mutation p.W2687L 0.33 benign(0.072) TCGA-49-AAR9-01 4 119609100 119609100 G A METTL14 Missense_Mutation p.S30N 0.52 tolerated_low_confidence(0.75) benign(0.202) TCGA-49-AAR9-01 4 124011770 124011770 G T SPATA5 Missense_Mutation p.L750F 0.41 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 4 128635180 128635180 T G INTU Missense_Mutation p.F883L 0.28 deleterious(0.01) probably_damaging(0.953) TCGA-49-AAR9-01 4 134073206 134073206 G T PCDH10 Missense_Mutation p.E637D 0.85 deleterious(0.04) probably_damaging(0.996) TCGA-49-AAR9-01 4 139981689 139981689 C A ELF2 Missense_Mutation p.D304Y 0.35 deleterious(0.01) possibly_damaging(0.785) TCGA-49-AAR9-01 4 146575288 146575288 A G MMAA Missense_Mutation p.K321R 0.33 tolerated(1) benign(0.002) TCGA-49-AAR9-01 4 16900109 16900109 C - LDB2 5'UTR 0.33 TCGA-49-AAR9-01 4 169108669 169108669 G A ANXA10 3'UTR 0.86 TCGA-49-AAR9-01 4 177608555 177608555 C A VEGFC Missense_Mutation p.D311Y 0.38 tolerated(0.05) probably_damaging(1) TCGA-49-AAR9-01 4 187003728 187003728 G T TLR3 Missense_Mutation p.W296C 0.22 deleterious(0.01) probably_damaging(0.967) TCGA-49-AAR9-01 4 188924602 188924602 C A ZFP42 Missense_Mutation p.P214H 0.33 deleterious(0) probably_damaging(0.999) TCGA-49-AAR9-01 4 189068616 189068616 G T TRIML1 3'UTR 0.91 TCGA-49-AAR9-01 4 20620645 20620645 C A SLIT2 3'UTR 0.32 TCGA-49-AAR9-01 4 3487350 3487350 C A DOK7 Missense_Mutation p.T206N 0.42 deleterious(0) possibly_damaging(0.769) TCGA-49-AAR9-01 4 38091598 38091598 C T TBC1D1 Missense_Mutation p.P699L 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-49-AAR9-01 4 44177126 44177126 G C KCTD8 Missense_Mutation p.T368S 0.30 tolerated(0.98) benign(0.014) TCGA-49-AAR9-01 4 47034461 47034461 T A GABRB1 Missense_Mutation p.I67N 0.31 deleterious(0) probably_damaging(0.987) TCGA-49-AAR9-01 4 52883779 52883779 T - LRRC66 Frame_Shift_Del p.M1? 0.21 TCGA-49-AAR9-01 4 57272667 57272667 C T PPAT Silent p.R132R 0.73 TCGA-49-AAR9-01 4 5841343 5841343 T C CRMP1 Missense_Mutation p.S406G 0.31 tolerated(0.06) benign(0.393) TCGA-49-AAR9-01 4 6043931 6043931 G T JAKMIP1 Silent p.T684T 0.39 TCGA-49-AAR9-01 4 62362963 62362963 C A LPHN3 5'UTR 0.55 TCGA-49-AAR9-01 4 647653 647653 T A PDE6B Missense_Mutation p.S242T 0.16 tolerated(0.67) probably_damaging(0.955) TCGA-49-AAR9-01 4 69433504 69433504 C A UGT2B17 Missense_Mutation p.W233C 0.27 deleterious(0) probably_damaging(0.999) TCGA-49-AAR9-01 4 69687988 69687988 G A UGT2B10 Splice_Site p.X290_splice 0.07 TCGA-49-AAR9-01 4 70070202 70070202 G T UGT2B11 Missense_Mutation p.T419K 0.72 tolerated(0.07) possibly_damaging(0.81) TCGA-49-AAR9-01 4 70596371 70596371 A T SULT1B1 Missense_Mutation p.I209N 0.44 deleterious(0.01) benign(0.365) TCGA-49-AAR9-01 4 72631218 72631218 G T GC Missense_Mutation p.T154N 0.37 tolerated(0.1) benign(0.042) TCGA-49-AAR9-01 4 73169785 73169785 T G ADAMTS3 Missense_Mutation p.Q758P 0.28 deleterious(0.01) benign(0.099) TCGA-49-AAR9-01 4 76447138 76447138 C G THAP6 Intron 0.29 TCGA-49-AAR9-01 4 79462068 79462068 G T FRAS1 Missense_Mutation p.L3943F 0.52 benign(0.14) TCGA-49-AAR9-01 4 8229272 8229272 G T SH3TC1 Silent p.R617R 0.34 TCGA-49-AAR9-01 4 96035926 96035926 G T BMPR1B Missense_Mutation p.V97F 0.40 tolerated(0.46) benign(0.004) TCGA-49-AAR9-01 4 98480259 98480259 C A STPG2 Nonsense_Mutation p.E444* 0.36 TCGA-49-AAR9-01 5 11236869 11236869 C A CTNND2 Silent p.S565S 0.50 TCGA-49-AAR9-01 5 11397221 11397221 C A CTNND2 Silent p.L178L 0.28 TCGA-49-AAR9-01 5 122729046 122729046 C A CEP120 Missense_Mutation p.R253L 0.55 deleterious(0) possibly_damaging(0.81) TCGA-49-AAR9-01 5 129521258 129521258 T G CHSY3 Missense_Mutation p.V808G 0.68 deleterious(0) probably_damaging(0.998) TCGA-49-AAR9-01 5 137892520 137892520 G A HSPA9 Silent p.I588I 0.48 TCGA-49-AAR9-01 5 138266328 138266328 T G CTNNA1 Missense_Mutation p.M726R 0.11 deleterious(0) probably_damaging(0.989) TCGA-49-AAR9-01 5 13845012 13845012 G A DNAH5 Silent p.S1735S 0.27 TCGA-49-AAR9-01 5 140626035 140626035 C A PCDHB15 Missense_Mutation p.L297I 0.44 tolerated_low_confidence(1) benign(0) TCGA-49-AAR9-01 5 140810617 140810617 G - PCDHGA12 Frame_Shift_Del p.A99Pfs*6 0.46 TCGA-49-AAR9-01 5 14419959 14419959 C T TRIO Nonsense_Mutation p.R1678* 0.25 TCGA-49-AAR9-01 5 149278975 149278975 C T PDE6A Missense_Mutation p.G409E 0.55 deleterious(0.02) probably_damaging(1) TCGA-49-AAR9-01 5 150925053 150925053 C T FAT2 Missense_Mutation p.V1879I 0.71 benign(0.003) TCGA-49-AAR9-01 5 154267692 154267692 G A GEMIN5 3'UTR 0.64 TCGA-49-AAR9-01 5 159520049 159520049 C G PWWP2A Missense_Mutation p.E536D 0.40 tolerated(0.21) benign(0.174) TCGA-49-AAR9-01 5 161277833 161277833 G T GABRA1 Missense_Mutation p.G6V 0.42 tolerated_low_confidence(0.07) benign(0.004) TCGA-49-AAR9-01 5 167957256 167957256 G T FBLL1 Silent p.V249V 0.34 TCGA-49-AAR9-01 5 172518521 172518521 G C CREBRF Intron 0.35 TCGA-49-AAR9-01 5 173531307 173531307 A C NSG2 Missense_Mutation p.Y97S 0.39 deleterious(0) probably_damaging(0.998) TCGA-49-AAR9-01 5 173531309 173531309 G T NSG2 Missense_Mutation p.D98Y 0.40 deleterious(0) probably_damaging(0.996) TCGA-49-AAR9-01 5 174953673 174953673 T A SFXN1 Nonsense_Mutation p.L302* 0.35 TCGA-49-AAR9-01 5 176314658 176314658 C - HK3 Frame_Shift_Del p.G465Efs*5 0.31 TCGA-49-AAR9-01 5 176823960 176823960 T A SLC34A1 Missense_Mutation p.V434E 0.31 deleterious(0) probably_damaging(0.918) TCGA-49-AAR9-01 5 176823961 176823961 G T SLC34A1 Silent p.V434V 0.31 TCGA-49-AAR9-01 5 180377112 180377112 G A BTNL8 Silent p.V357V 0.41 TCGA-49-AAR9-01 5 180477186 180477186 C A BTNL9 Missense_Mutation p.Q185K 0.33 deleterious(0.05) possibly_damaging(0.663) TCGA-49-AAR9-01 5 180582877 180582877 G T OR2V2 Missense_Mutation p.G312V 0.48 tolerated(0.06) benign(0.011) TCGA-49-AAR9-01 5 26902596 26902596 G C CDH9 Missense_Mutation p.N414K 0.16 tolerated(0.22) benign(0.001) TCGA-49-AAR9-01 5 26915967 26915967 G T CDH9 Silent p.G98G 0.22 TCGA-49-AAR9-01 5 33938281 33938281 C G RXFP3 3'UTR 0.17 TCGA-49-AAR9-01 5 33964083 33964083 C A SLC45A2 Missense_Mutation p.D201Y 0.54 deleterious(0) probably_damaging(0.999) TCGA-49-AAR9-01 5 42719118 42719118 G T GHR Silent p.P503P 0.14 TCGA-49-AAR9-01 5 42719119 42719119 G T GHR Missense_Mutation p.G504C 0.14 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 5 43700247 43700247 G T NNT Missense_Mutation p.R968L 0.22 deleterious(0) probably_damaging(0.999) TCGA-49-AAR9-01 5 45303834 45303834 C A HCN1 Silent p.V495V 0.18 TCGA-49-AAR9-01 5 5182300 5182300 G T ADAMTS16 Silent p.G215G 0.30 TCGA-49-AAR9-01 5 5462503 5462503 C T KIAA0947 Missense_Mutation p.T1019I 0.20 tolerated(0.76) benign(0.001) TCGA-49-AAR9-01 5 61778980 61778980 G C IPO11 Missense_Mutation p.R334T 0.14 tolerated(0.69) benign(0.39) TCGA-49-AAR9-01 5 63257022 63257022 C A HTR1A Missense_Mutation p.W175C 0.33 deleterious(0) probably_damaging(0.992) TCGA-49-AAR9-01 5 72192349 72192349 C T TNPO1 Silent p.A736A 0.62 TCGA-49-AAR9-01 5 7789878 7789878 G T ADCY2 Missense_Mutation p.A865S 0.34 deleterious(0.02) probably_damaging(0.996) TCGA-49-AAR9-01 5 886837 886837 T A BRD9 Intron 0.24 TCGA-49-AAR9-01 5 89989728 89989728 G A GPR98 Silent p.L2385L 0.64 TCGA-49-AAR9-01 6 10709643 10709643 G A PAK1IP1 Silent p.L379L 0.67 TCGA-49-AAR9-01 6 10756826 10756826 G T TMEM14B 3'UTR 0.73 TCGA-49-AAR9-01 6 110777957 110777957 C A SLC22A16 Missense_Mutation p.R106M 0.65 deleterious(0) probably_damaging(0.996) TCGA-49-AAR9-01 6 118635226 118635226 C A SLC35F1 Silent p.I346I 0.54 TCGA-49-AAR9-01 6 126080738 126080738 C G HEY2 Silent p.A268A 0.46 TCGA-49-AAR9-01 6 130455019 130455019 G T L3MBTL3 Missense_Mutation p.C723F 0.57 deleterious(0) possibly_damaging(0.609) TCGA-49-AAR9-01 6 132859647 132859647 G T TAAR9 Silent p.S73S 0.49 TCGA-49-AAR9-01 6 143092714 143092714 C - HIVEP2 Frame_Shift_Del p.N1055Ifs*49 0.43 TCGA-49-AAR9-01 6 146127199 146127199 C A FBXO30 Missense_Mutation p.D115Y 0.58 tolerated(0.07) possibly_damaging(0.887) TCGA-49-AAR9-01 6 149944294 149944294 C G KATNA1 Missense_Mutation p.G149A 0.47 tolerated(0.12) benign(0.003) TCGA-49-AAR9-01 6 150005602 150005602 T A LATS1 Missense_Mutation p.Q208L 0.72 tolerated_low_confidence(0.82) benign(0.243) TCGA-49-AAR9-01 6 151686883 151686883 T G ZBTB2 Missense_Mutation p.M440L 0.43 tolerated(0.4) benign(0) TCGA-49-AAR9-01 6 152776692 152776692 G T SYNE1 Missense_Mutation p.H921N 0.54 benign(0.002) TCGA-49-AAR9-01 6 158483054 158483054 G C SYNJ2 Missense_Mutation p.D329H 0.61 deleterious(0.01) possibly_damaging(0.859) TCGA-49-AAR9-01 6 170173467 170173467 G T ERMARD Missense_Mutation p.R429L 0.34 deleterious(0.02) benign(0.345) TCGA-49-AAR9-01 6 26184240 26184240 C A HIST1H2BE Missense_Mutation p.R73S 0.70 deleterious_low_confidence(0.01) benign(0.318) TCGA-49-AAR9-01 6 32008335 32008335 G T CYP21A2 Missense_Mutation p.L364F 0.46 deleterious(0.01) probably_damaging(0.991) TCGA-49-AAR9-01 6 36270031 36270031 C A PNPLA1 Missense_Mutation p.P390H 0.31 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-49-AAR9-01 6 43550169 43550169 A T POLH Missense_Mutation p.Q38L 0.41 deleterious(0) probably_damaging(0.999) TCGA-49-AAR9-01 6 66044864 66044864 C A EYS Intron 0.19 TCGA-49-AAR9-01 6 70812078 70812078 A T COL19A1 Silent p.T414T 0.33 TCGA-49-AAR9-01 6 75815000 75815000 C T COL12A1 Silent p.E2729E 0.24 TCGA-49-AAR9-01 6 84913808 84913808 T A KIAA1009 Missense_Mutation p.Y193F 0.52 deleterious(0.02) benign(0.057) TCGA-49-AAR9-01 6 85446750 85446750 A T TBX18 Missense_Mutation p.S493T 0.52 tolerated(0.32) probably_damaging(0.931) TCGA-49-AAR9-01 6 93967870 93967870 A G EPHA7 Missense_Mutation p.M686T 0.53 deleterious(0) probably_damaging(0.993) TCGA-49-AAR9-01 6 97246914 97246914 C T GPR63 Missense_Mutation p.G232R 0.62 deleterious(0) probably_damaging(0.998) TCGA-49-AAR9-01 7 103417053 103417053 G T RELN Silent p.G165G 0.52 TCGA-49-AAR9-01 7 128359029 128359029 G T FAM71F1 Silent p.L193L 0.42 TCGA-49-AAR9-01 7 138943327 138943329 GAA - UBN2 In_Frame_Del p.E254del 0.39 TCGA-49-AAR9-01 7 142028604 142028604 G T TRBV6-1 Missense_Mutation p.S113I 0.39 deleterious(0) probably_damaging(0.995) TCGA-49-AAR9-01 7 142045371 142045371 C G TRBV4-2 Missense_Mutation p.C3W 0.43 tolerated(0.09) unknown(0) TCGA-49-AAR9-01 7 142251125 142251125 G C TRBV6-4 Missense_Mutation p.L5V 0.34 tolerated(0.12) benign(0.085) TCGA-49-AAR9-01 7 142571884 142571884 G A TRPV6 Silent p.G488G 0.26 TCGA-49-AAR9-01 7 143047546 143047546 G T CLCN1 Missense_Mutation p.V829L 0.47 deleterious(0.03) probably_damaging(0.995) TCGA-49-AAR9-01 7 148701125 148701125 T A PDIA4 Missense_Mutation p.S567C 0.45 deleterious(0.01) possibly_damaging(0.647) TCGA-49-AAR9-01 7 149191375 149191375 C G ZNF746 Missense_Mutation p.E82Q 0.51 deleterious(0) probably_damaging(0.986) TCGA-49-AAR9-01 7 149191376 149191376 C A ZNF746 Silent p.L81L 0.51 TCGA-49-AAR9-01 7 150324969 150324969 G T GIMAP6 Silent p.T239T 0.22 TCGA-49-AAR9-01 7 150779303 150779303 C A TMUB1 Silent p.V116V 0.38 TCGA-49-AAR9-01 7 150784029 150784029 G T AGAP3 Silent p.A67A 0.23 TCGA-49-AAR9-01 7 155595652 155595652 G T SHH Missense_Mutation p.T444N 0.46 tolerated(0.51) benign(0.275) TCGA-49-AAR9-01 7 18067330 18067330 C T PRPS1L1 Missense_Mutation p.E26K 0.68 tolerated(0.21) benign(0.006) TCGA-49-AAR9-01 7 19185025 19185025 G T FERD3L 5'UTR 0.86 TCGA-49-AAR9-01 7 43485021 43485021 C T HECW1 Silent p.P750P 0.69 TCGA-49-AAR9-01 7 50450272 50450272 C T IKZF1 Silent p.A152A 0.38 TCGA-49-AAR9-01 7 5167310 5167310 A T ZNF890P RNA 0.45 TCGA-49-AAR9-01 7 73455561 73455561 C G ELN Missense_Mutation p.A71G 0.32 unknown(0) TCGA-49-AAR9-01 7 75511251 75511251 G T RHBDD2 Missense_Mutation p.G95C 0.49 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 7 82546058 82546058 C A PCLO Missense_Mutation p.R3748S 0.31 unknown(0) TCGA-49-AAR9-01 8 10389039 10389039 G T PRSS55 Missense_Mutation p.W194C 0.27 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 8 104955111 104955111 A G RIMS2 Silent p.P886P 0.36 TCGA-49-AAR9-01 8 105463559 105463559 G T DPYS Missense_Mutation p.A113D 0.17 deleterious(0) probably_damaging(0.969) TCGA-49-AAR9-01 8 109241314 109241314 C A EIF3E Missense_Mutation p.E194D 0.38 tolerated(0.32) benign(0.024) TCGA-49-AAR9-01 8 110476784 110476784 G T PKHD1L1 Missense_Mutation p.A2575S 0.24 deleterious(0.01) possibly_damaging(0.661) TCGA-49-AAR9-01 8 110587755 110587755 G T SYBU Missense_Mutation p.L458I 0.30 tolerated(0.35) benign(0.055) TCGA-49-AAR9-01 8 113418865 113418865 C A CSMD3 Silent p.S1899S 0.36 TCGA-49-AAR9-01 8 113421209 113421209 C A CSMD3 Missense_Mutation p.E1816D 0.32 tolerated(0.07) benign(0.261) TCGA-49-AAR9-01 8 113649189 113649189 C A CSMD3 Missense_Mutation p.G1191V 0.32 deleterious(0.02) probably_damaging(0.989) TCGA-49-AAR9-01 8 113657442 113657442 C A CSMD3 Missense_Mutation p.G1069V 0.42 deleterious(0) benign(0.029) TCGA-49-AAR9-01 8 113988342 113988342 C A CSMD3 Nonsense_Mutation p.E356* 0.37 TCGA-49-AAR9-01 8 116616231 116616231 C G TRPS1 Silent p.S655S 0.18 TCGA-49-AAR9-01 8 116632222 116632222 C A TRPS1 Nonsense_Mutation p.E35* 0.33 TCGA-49-AAR9-01 8 126011687 126011688 - A SQLE Frame_Shift_Ins p.K16Efs*71 0.35 TCGA-49-AAR9-01 8 133844552 133844552 G T PHF20L1 Missense_Mutation p.G606V 0.27 deleterious(0.02) benign(0.424) TCGA-49-AAR9-01 8 134472022 134472022 G A ST3GAL1 Silent p.I336I 0.38 TCGA-49-AAR9-01 8 139190841 139190841 C A FAM135B Silent p.L322L 0.38 TCGA-49-AAR9-01 8 144998339 144998339 G A PLEC Missense_Mutation p.R2057W 0.29 unknown(0) TCGA-49-AAR9-01 8 145140293 145140293 G T GPAA1 Missense_Mutation p.Q454H 0.20 tolerated(0.16) benign(0.007) TCGA-49-AAR9-01 8 146279475 146279475 C T C8orf33 Missense_Mutation p.R208C 0.40 deleterious(0) probably_damaging(0.991) TCGA-49-AAR9-01 8 19363372 19363372 C A CSGALNACT1 5'UTR 0.64 TCGA-49-AAR9-01 8 23167421 23167421 G A LOXL2 Missense_Mutation p.A547V 0.52 deleterious(0) probably_damaging(0.979) TCGA-49-AAR9-01 8 2836150 2836150 G T CSMD1 Silent p.S2850S 0.50 TCGA-49-AAR9-01 8 36693884 36693884 G T KCNU1 Splice_Site p.X455_splice 0.39 TCGA-49-AAR9-01 8 40011078 40011078 C T C8orf4 Silent p.A9A 0.55 TCGA-49-AAR9-01 8 42761346 42761346 C T HOOK3 Nonsense_Mutation p.Q30* 0.36 TCGA-49-AAR9-01 8 51664635 51664635 G T SNTG1 Missense_Mutation p.L453F 0.35 deleterious(0.03) probably_damaging(0.952) TCGA-49-AAR9-01 8 52322028 52322028 G T PXDNL Missense_Mutation p.S719Y 0.35 deleterious(0) probably_damaging(0.99) TCGA-49-AAR9-01 8 54163409 54163409 C G OPRK1 Silent p.T63T 0.35 TCGA-49-AAR9-01 8 64099293 64099293 G C YTHDF3 Missense_Mutation p.A241P 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-49-AAR9-01 8 65527709 65527709 G A CYP7B1 Missense_Mutation p.H311Y 0.32 deleterious(0.04) benign(0.186) TCGA-49-AAR9-01 8 71520310 71520310 A C TRAM1 Splice_Site p.X41_splice 0.50 TCGA-49-AAR9-01 8 76470803 76470803 G T HNF4G Missense_Mutation p.V252L 0.42 tolerated(0.13) benign(0.251) TCGA-49-AAR9-01 8 77766572 77766572 C T ZFHX4 Missense_Mutation p.S2472F 0.43 probably_damaging(0.989) TCGA-49-AAR9-01 8 87060826 87060826 C A PSKH2 Missense_Mutation p.M341I 0.36 tolerated(0.44) benign(0.001) TCGA-49-AAR9-01 8 88886222 88886222 T A DCAF4L2 5'UTR 0.47 TCGA-49-AAR9-01 8 92261875 92261875 G T SLC26A7 5'UTR 0.31 TCGA-49-AAR9-01 9 100672280 100672280 G A C9orf156 Missense_Mutation p.P343L 0.32 deleterious(0.02) probably_damaging(1) TCGA-49-AAR9-01 9 107646817 107646817 C G ABCA1 Missense_Mutation p.G65R 0.40 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 9 120476109 120476109 C A TLR4 Missense_Mutation p.P568Q 0.45 deleterious(0) probably_damaging(0.993) TCGA-49-AAR9-01 9 124976286 124976286 C G LHX6 Silent p.A282A 0.42 TCGA-49-AAR9-01 9 125616230 125616230 C A RC3H2 Splice_Site p.X1039_splice 0.33 TCGA-49-AAR9-01 9 133942582 133942582 C T LAMC3 Silent p.D861D 0.75 TCGA-49-AAR9-01 9 139741099 139741099 C A C9orf172 Missense_Mutation p.L745M 0.45 deleterious(0) probably_damaging(0.999) TCGA-49-AAR9-01 9 17416187 17416187 G T CNTLN Missense_Mutation p.K1038N 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-49-AAR9-01 9 18817158 18817158 C A ADAMTSL1 Missense_Mutation p.P1286H 0.50 deleterious(0.05) probably_damaging(0.948) TCGA-49-AAR9-01 9 21970985 21970985 C T CDKN2A Missense_Mutation p.D125N 0.67 deleterious(0.05) benign(0.036) TCGA-49-AAR9-01 9 26928378 26928378 C - PLAA Frame_Shift_Del p.T125Hfs*15 0.39 TCGA-49-AAR9-01 9 35711078 35711078 C A TLN1 Missense_Mutation p.A1341S 0.46 tolerated(0.22) probably_damaging(0.992) TCGA-49-AAR9-01 9 37719162 37719162 G C FRMPD1 Missense_Mutation p.G169R 0.43 deleterious(0) probably_damaging(0.96) TCGA-49-AAR9-01 9 43816726 43816726 G A CNTNAP3B Missense_Mutation p.E278K 0.18 deleterious(0) probably_damaging(0.914) TCGA-49-AAR9-01 9 6329039 6329039 G A TPD52L3 3'UTR 0.67 TCGA-49-AAR9-01 9 77683965 77683965 C A NMRK1 Missense_Mutation p.W148L 0.24 deleterious(0) probably_damaging(1) TCGA-49-AAR9-01 9 8341806 8341806 C G PTPRD Missense_Mutation p.A1612P 0.33 deleterious(0) probably_damaging(0.994) TCGA-49-AAR9-01 9 90499848 90499848 G T SPATA31E1 Missense_Mutation p.G149V 0.21 deleterious(0.02) benign(0.187) TCGA-49-AAR9-01 9 92003845 92003845 C A SEMA4D Missense_Mutation p.V298L 0.82 tolerated(0.89) benign(0.053) TCGA-49-AAR9-01 9 94519597 94519597 C A ROR2 Silent p.G140G 0.38 TCGA-49-AAR9-01 X 10423025 10423025 T G MID1 Missense_Mutation p.K514Q 0.37 tolerated(0.06) probably_damaging(0.925) TCGA-49-AAR9-01 X 107225091 107225091 C A TEX13B Missense_Mutation p.R89S 0.80 deleterious(0.03) possibly_damaging(0.749) TCGA-49-AAR9-01 X 123556482 123556482 A T TENM1 Missense_Mutation p.L1371I 0.73 deleterious(0.01) probably_damaging(0.991) TCGA-49-AAR9-01 X 125685302 125685302 C G DCAF12L1 Silent p.A430A 0.69 TCGA-49-AAR9-01 X 129147217 129147217 G C BCORL1 Missense_Mutation p.A157P 0.66 unknown(0) TCGA-49-AAR9-01 X 129630151 129630151 C G RP1-274L7.1 Intron 0.35 TCGA-49-AAR9-01 X 130419112 130419112 G T IGSF1 Intron 1.00 TCGA-49-AAR9-01 X 134978414 134978414 C A SAGE1 Missense_Mutation p.P5T 0.89 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-49-AAR9-01 X 135405289 135405289 G T GPR112 Missense_Mutation p.R141S 0.46 deleterious(0.04) probably_damaging(0.93) TCGA-49-AAR9-01 X 136649264 136649264 G A ZIC3 Silent p.G138G 0.75 TCGA-49-AAR9-01 X 142718271 142718271 G C SLITRK4 Missense_Mutation p.S218R 0.61 deleterious(0) benign(0.031) TCGA-49-AAR9-01 X 1471326 1471326 C T IL3RA Silent p.H181H 0.28 TCGA-49-AAR9-01 X 14927023 14927023 G C MOSPD2 Missense_Mutation p.V207L 0.43 tolerated(0.05) benign(0.021) TCGA-49-AAR9-01 X 152713230 152713230 C A TREX2 5'UTR 0.75 TCGA-49-AAR9-01 X 155239685 155239685 C A IL9R Missense_Mutation p.L393M 0.64 deleterious(0.05) probably_damaging(0.957) TCGA-49-AAR9-01 X 26158113 26158113 C A MAGEB18 Missense_Mutation p.S337R 0.42 tolerated(0.09) possibly_damaging(0.844) TCGA-49-AAR9-01 X 27839658 27839658 C A MAGEB10 Missense_Mutation p.H79N 0.26 tolerated(0.31) benign(0.013) TCGA-49-AAR9-01 X 27999295 27999295 C G DCAF8L1 Missense_Mutation p.D53H 0.15 tolerated_low_confidence(0.05) possibly_damaging(0.808) TCGA-49-AAR9-01 X 28807497 28807497 G T IL1RAPL1 Missense_Mutation p.A13S 0.36 tolerated(0.44) benign(0.002) TCGA-49-AAR9-01 X 30322897 30322897 C A NR0B1 Missense_Mutation p.Q404H 0.30 deleterious(0.04) benign(0.422) TCGA-49-AAR9-01 X 30873035 30873035 C A TAB3 Silent p.P249P 0.38 TCGA-49-AAR9-01 X 30873036 30873036 G A TAB3 Missense_Mutation p.P249L 0.38 tolerated(0.06) benign(0.032) TCGA-49-AAR9-01 X 37028122 37028122 C A FAM47C Missense_Mutation p.R547S 0.36 tolerated_low_confidence(0.47) unknown(0) TCGA-49-AAR9-01 X 55102509 55102509 C A PAGE2B Nonsense_Mutation p.S12* 0.46 TCGA-49-AAR9-01 X 6069305 6069305 C A NLGN4X Missense_Mutation p.G68V 0.46 tolerated(0.13) probably_damaging(1) TCGA-49-AAR9-01 X 64138952 64138952 G A ZC4H2 Silent p.A177A 0.79 TCGA-49-AAR9-01 X 69479330 69479330 C A P2RY4 Missense_Mutation p.G49C 0.91 deleterious(0) probably_damaging(0.95) TCGA-49-AAR9-01 X 80001085 80001085 C A BRWD3 Missense_Mutation p.G192W 0.67 deleterious(0) probably_damaging(0.999) TCGA-49-AAR9-01 X 82763608 82763608 G C POU3F4 Silent p.A92A 0.50 TCGA-49-AAR9-01 Y 14888704 14888704 G T USP9Y Missense_Mutation p.R850L 0.71 deleterious(0) possibly_damaging(0.866) TCGA-49-AARE-01 10 101604182 101604182 T G ABCC2 Missense_Mutation p.V1316G 0.23 deleterious(0) possibly_damaging(0.796) TCGA-49-AARE-01 10 102894051 102894051 G T TLX1 Nonsense_Mutation p.E230* 0.23 TCGA-49-AARE-01 10 107015472 107015472 C A SORCS3 Missense_Mutation p.L1084M 0.16 tolerated(0.08) benign(0.05) TCGA-49-AARE-01 10 112344132 112344132 A T SMC3 Missense_Mutation p.E428V 0.27 tolerated(0.17) possibly_damaging(0.463) TCGA-49-AARE-01 10 115980446 115980446 G C TDRD1 Missense_Mutation p.E872Q 0.16 deleterious(0.03) benign(0.349) TCGA-49-AARE-01 10 115982440 115982440 C T TDRD1 Silent p.D995D 0.22 TCGA-49-AARE-01 10 116930908 116930908 T A ATRNL1 Silent p.V402V 0.22 TCGA-49-AARE-01 10 118314923 118314923 G T PNLIP Missense_Mutation p.G239C 0.23 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 10 118425161 118425161 C T C10orf82 Missense_Mutation p.A78T 0.14 tolerated(0.42) benign(0.009) TCGA-49-AARE-01 10 118891691 118891691 G T VAX1 3'Flank 0.16 TCGA-49-AARE-01 10 119044936 119044936 C T PDZD8 Silent p.Q436Q 0.14 TCGA-49-AARE-01 10 121692666 121692666 C G SEC23IP Missense_Mutation p.H970D 0.12 deleterious(0) probably_damaging(0.961) TCGA-49-AARE-01 10 124380842 124380842 G T DMBT1 Missense_Mutation p.G1723C 0.27 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 10 124457858 124457858 A T C10orf120 Nonsense_Mutation p.C133* 0.13 TCGA-49-AARE-01 10 124797298 124797298 G T ACADSB Missense_Mutation p.V80F 0.36 deleterious(0) probably_damaging(0.99) TCGA-49-AARE-01 10 124909260 124909260 C A HMX2 Missense_Mutation p.A148D 0.40 tolerated(0.17) benign(0.062) TCGA-49-AARE-01 10 125506440 125506440 A G CPXM2 Missense_Mutation p.M704T 0.16 tolerated(0.43) benign(0.021) TCGA-49-AARE-01 10 125528039 125528039 T C CPXM2 Intron 0.22 TCGA-49-AARE-01 10 131666177 131666177 C T EBF3 Splice_Site p.X252_splice 0.15 TCGA-49-AARE-01 10 13237148 13237148 G T MCM10 Missense_Mutation p.G619V 0.33 tolerated(0.11) benign(0.315) TCGA-49-AARE-01 10 134671161 134671161 G A TTC40 Missense_Mutation p.A1836V 0.33 tolerated(0.28) benign(0.001) TCGA-49-AARE-01 10 135053597 135053597 C A VENTX Silent p.P188P 0.30 TCGA-49-AARE-01 10 15106468 15106468 G A OLAH Silent p.L176L 0.24 TCGA-49-AARE-01 10 15210617 15210617 C A NMT2 5'UTR 0.35 TCGA-49-AARE-01 10 17165621 17165621 T C CUBN Missense_Mutation p.D152G 0.11 tolerated(0.12) benign(0.2) TCGA-49-AARE-01 10 18266965 18266965 G A SLC39A12 Missense_Mutation p.E296K 0.20 tolerated(0.91) benign(0.003) TCGA-49-AARE-01 10 18807863 18807863 C A CACNB2 Missense_Mutation p.L304M 0.41 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 10 21112214 21112214 C A NEBL Nonsense_Mutation p.E629* 0.41 TCGA-49-AARE-01 10 21158685 21158685 G A NEBL Missense_Mutation p.S189F 0.11 deleterious(0) possibly_damaging(0.836) TCGA-49-AARE-01 10 21827793 21827793 A T MLLT10 Silent p.G64G 0.26 TCGA-49-AARE-01 10 26939511 26939511 T C LINC00202-2 RNA 0.16 TCGA-49-AARE-01 10 27382372 27382372 C - ANKRD26 Frame_Shift_Del p.G146Afs*16 0.21 TCGA-49-AARE-01 10 31750061 31750061 G C ZEB1 Missense_Mutation p.D52H 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-49-AARE-01 10 35842108 35842108 G A CCNY Silent p.E247E 0.17 TCGA-49-AARE-01 10 37430974 37430974 C A ANKRD30A Silent p.I327I 0.11 TCGA-49-AARE-01 10 37508238 37508238 C A ANKRD30A Missense_Mutation p.P1144T 0.16 tolerated(0.31) possibly_damaging(0.908) TCGA-49-AARE-01 10 38241353 38241353 G C ZNF25 Missense_Mutation p.T358S 0.23 tolerated(0.19) probably_damaging(0.995) TCGA-49-AARE-01 10 38343994 38343994 G T ZNF33A Missense_Mutation p.L314F 0.23 tolerated(0.18) possibly_damaging(0.824) TCGA-49-AARE-01 10 38344867 38344867 G T ZNF33A Silent p.G605G 0.25 TCGA-49-AARE-01 10 43089218 43089218 A C ZNF33B Missense_Mutation p.F394V 0.19 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 10 45499314 45499314 C T ZNF22 Silent p.P166P 0.21 TCGA-49-AARE-01 10 48382067 48382067 C A RBP3 Silent p.T1194T 0.33 TCGA-49-AARE-01 10 48390647 48390647 C A RBP3 Silent p.G77G 0.18 TCGA-49-AARE-01 10 49612995 49612995 G T MAPK8 Missense_Mutation p.V75F 0.17 tolerated(0.07) probably_damaging(0.99) TCGA-49-AARE-01 10 50947833 50947833 C T OGDHL Silent p.E731E 0.12 TCGA-49-AARE-01 10 55569009 55569009 C - PCDH15 Frame_Shift_Del p.E535Nfs*214 0.12 TCGA-49-AARE-01 10 56287617 56287617 C A PCDH15 Nonsense_Mutation p.G38* 0.17 TCGA-49-AARE-01 10 59956105 59956105 T C IPMK Missense_Mutation p.K328R 0.16 tolerated(0.63) benign(0.002) TCGA-49-AARE-01 10 61424014 61424014 C A SLC16A9 Missense_Mutation p.R136L 0.17 deleterious(0) benign(0.275) TCGA-49-AARE-01 10 6154205 6154205 A G RBM17 Missense_Mutation p.Y246C 0.21 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 10 61666019 61666019 C A CCDC6 Missense_Mutation p.R55L 0.15 tolerated(0.32) benign(0.004) TCGA-49-AARE-01 10 69752395 69752395 C A HERC4 Missense_Mutation p.D372Y 0.33 deleterious(0) probably_damaging(0.97) TCGA-49-AARE-01 10 73111352 73111352 G T SLC29A3 Silent p.L139L 0.15 TCGA-49-AARE-01 10 73992776 73992776 A T ANAPC16 Missense_Mutation p.M79L 0.19 tolerated_low_confidence(0.11) benign(0.018) TCGA-49-AARE-01 10 75549941 75549941 G C ZSWIM8 Missense_Mutation p.G278R 0.21 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 10 75549942 75549942 G A ZSWIM8 Missense_Mutation p.G278E 0.21 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 10 76153948 76153948 G T ADK Missense_Mutation p.G108V 0.13 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 10 7759717 7759717 A T ITIH2 Missense_Mutation p.Y199F 0.31 tolerated(0.47) benign(0.002) TCGA-49-AARE-01 10 82036212 82036212 C A MAT1A Missense_Mutation p.V230L 0.13 deleterious(0) possibly_damaging(0.542) TCGA-49-AARE-01 10 84745132 84745132 T A NRG3 Missense_Mutation p.I621K 0.19 tolerated_low_confidence(0.06) benign(0.168) TCGA-49-AARE-01 10 85982067 85982067 T G LRIT2 Missense_Mutation p.D421A 0.10 tolerated(0.11) benign(0.103) TCGA-49-AARE-01 10 85984498 85984498 A G LRIT2 Silent p.N161N 0.24 TCGA-49-AARE-01 10 87615846 87615846 G T GRID1 Nonsense_Mutation p.C351* 0.08 TCGA-49-AARE-01 10 91099327 91099327 G A IFIT3 Silent p.E305E 0.30 TCGA-49-AARE-01 10 95421831 95421831 G A PDE6C Missense_Mutation p.A742T 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-49-AARE-01 10 97607195 97607195 C A ENTPD1 Intron 0.17 TCGA-49-AARE-01 10 97607196 97607196 C A ENTPD1 Intron 0.15 TCGA-49-AARE-01 10 98031219 98031219 C A BLNK 5'UTR 0.22 TCGA-49-AARE-01 10 98157029 98157029 G A TLL2 Missense_Mutation p.P433L 0.19 tolerated(0.24) benign(0.059) TCGA-49-AARE-01 10 98469607 98469607 G - PIK3AP1 Frame_Shift_Del p.E50Rfs*9 0.19 TCGA-49-AARE-01 10 98989582 98989582 G A ARHGAP19 Missense_Mutation p.P445L 0.10 tolerated(0.45) benign(0.01) TCGA-49-AARE-01 10 99642547 99642547 G T CRTAC1 Nonsense_Mutation p.C557* 0.26 TCGA-49-AARE-01 11 101347224 101347224 G T TRPC6 Missense_Mutation p.P518T 0.19 tolerated(0.07) probably_damaging(0.999) TCGA-49-AARE-01 11 11400647 11400647 C A GALNT18 Missense_Mutation p.V254L 0.35 deleterious(0.02) possibly_damaging(0.488) TCGA-49-AARE-01 11 1156589 1156589 A T MUC5AC Missense_Mutation p.K202N 0.39 deleterious(0) probably_damaging(0.986) TCGA-49-AARE-01 11 118850339 118850339 C A FOXR1 Missense_Mutation p.P191H 0.53 tolerated(0.12) possibly_damaging(0.712) TCGA-49-AARE-01 11 122726488 122726488 A T CRTAM Silent p.S192S 0.55 TCGA-49-AARE-01 11 12281424 12281424 C T MICAL2 Missense_Mutation p.T1105I 0.20 deleterious_low_confidence(0.02) benign(0.224) TCGA-49-AARE-01 11 125472784 125472784 G T STT3A Missense_Mutation p.A120S 0.35 deleterious(0.03) benign(0.256) TCGA-49-AARE-01 11 1264880 1264880 C A MUC5B Missense_Mutation p.P2257H 0.32 probably_damaging(0.971) TCGA-49-AARE-01 11 1265610 1265610 C A MUC5B Silent p.A2500A 0.45 TCGA-49-AARE-01 11 1265855 1265855 C A MUC5B Missense_Mutation p.T2582N 0.33 unknown(0) TCGA-49-AARE-01 11 1265856 1265856 C A MUC5B Silent p.T2582T 0.32 TCGA-49-AARE-01 11 128638059 128638059 G T FLI1 Missense_Mutation p.G93C 0.19 deleterious(0.01) probably_damaging(0.926) TCGA-49-AARE-01 11 128843074 128843074 C T ARHGAP32 Silent p.K1095K 0.18 TCGA-49-AARE-01 11 130343181 130343181 G T ADAMTS15 Missense_Mutation p.R773L 0.39 deleterious(0.05) benign(0.249) TCGA-49-AARE-01 11 134073654 134073654 C A NCAPD3 Missense_Mutation p.D455Y 0.20 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 11 14989258 14989258 T G CALCA 3'Flank 0.44 TCGA-49-AARE-01 11 15260605 15260605 G T INSC Missense_Mutation p.A507S 0.20 deleterious(0.05) probably_damaging(0.956) TCGA-49-AARE-01 11 1718458 1718458 C T KRTAP5-6 5'UTR 0.15 TCGA-49-AARE-01 11 17428294 17428294 C A ABCC8 Silent p.T1068T 0.21 TCGA-49-AARE-01 11 18194670 18194670 G C MRGPRX4 5'UTR 0.29 TCGA-49-AARE-01 11 1862704 1862704 G A TNNI2 Missense_Mutation p.V158M 0.11 deleterious(0) probably_damaging(0.987) TCGA-49-AARE-01 11 18765581 18765581 A T PTPN5 Missense_Mutation p.L88Q 0.13 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-49-AARE-01 11 21581863 21581863 G A NELL1 Missense_Mutation p.G639R 0.26 tolerated(0.52) benign(0.006) TCGA-49-AARE-01 11 24927560 24927560 C T LUZP2 Silent p.L140L 0.18 TCGA-49-AARE-01 11 26463538 26463538 C A ANO3 Silent p.L40L 0.20 TCGA-49-AARE-01 11 26718736 26718736 C A SLC5A12 Missense_Mutation p.A339S 0.10 deleterious(0.04) possibly_damaging(0.822) TCGA-49-AARE-01 11 27016017 27016017 C T FIBIN 5'UTR 0.19 TCGA-49-AARE-01 11 27520303 27520303 C A LIN7C Missense_Mutation p.A163S 0.32 tolerated(0.06) probably_damaging(0.999) TCGA-49-AARE-01 11 281733 281733 C A NLRP6 Missense_Mutation p.P667T 0.23 tolerated(0.13) probably_damaging(1) TCGA-49-AARE-01 11 30902807 30902807 C G DCDC1 Missense_Mutation p.A1708P 0.10 tolerated(0.2) benign(0.005) TCGA-49-AARE-01 11 3125604 3125604 C A OSBPL5 Missense_Mutation p.G355C 0.12 deleterious(0) possibly_damaging(0.779) TCGA-49-AARE-01 11 32663518 32663518 A G CCDC73 Silent p.H350H 0.32 TCGA-49-AARE-01 11 34154674 34154674 G T NAT10 Silent p.V573V 0.39 TCGA-49-AARE-01 11 35219689 35219689 C G CD44 Nonsense_Mutation p.S273* 0.17 TCGA-49-AARE-01 11 35323110 35323110 G T SLC1A2 Missense_Mutation p.N271K 0.27 deleterious(0.05) benign(0.219) TCGA-49-AARE-01 11 35323157 35323157 T C SLC1A2 Missense_Mutation p.M256V 0.14 tolerated(0.11) benign(0.324) TCGA-49-AARE-01 11 372947 372947 T A B4GALNT4 Missense_Mutation p.H148Q 0.42 deleterious(0.02) probably_damaging(0.928) TCGA-49-AARE-01 11 3789947 3789947 C A NUP98 Missense_Mutation p.G271V 0.18 deleterious(0.01) probably_damaging(1) TCGA-49-AARE-01 11 379931 379931 G T B4GALNT4 Missense_Mutation p.G852W 0.16 deleterious(0) unknown(0) TCGA-49-AARE-01 11 4127370 4127370 C A RRM1 Missense_Mutation p.T68N 0.21 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-49-AARE-01 11 45204488 45204488 G T PRDM11 Silent p.P100P 0.18 TCGA-49-AARE-01 11 45246109 45246109 G T PRDM11 Nonsense_Mutation p.E362* 0.13 TCGA-49-AARE-01 11 47267153 47267153 G A ACP2 Intron 0.09 TCGA-49-AARE-01 11 4790251 4790251 T A OR51F1 Missense_Mutation p.K299N 0.38 deleterious(0.01) possibly_damaging(0.77) TCGA-49-AARE-01 11 48238457 48238457 G C OR4B1 Silent p.V32V 0.15 TCGA-49-AARE-01 11 49168276 49168276 C A FOLH1 3'UTR 0.48 TCGA-49-AARE-01 11 5080558 5080558 G T OR52E2 Silent p.L100L 0.55 TCGA-49-AARE-01 11 5323107 5323107 G T OR51B4 Silent p.R24R 0.32 TCGA-49-AARE-01 11 5444021 5444021 C A OR51Q1 Missense_Mutation p.N197K 0.24 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 11 55065466 55065466 C A TRIM51HP RNA 0.11 TCGA-49-AARE-01 11 55136044 55136044 G T OR4A15 Missense_Mutation p.A229S 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.786) TCGA-49-AARE-01 11 55136166 55136166 A G OR4A15 Silent p.A269A 0.12 TCGA-49-AARE-01 11 55681670 55681670 A C OR5W2 Missense_Mutation p.L130R 0.10 deleterious(0) probably_damaging(0.997) TCGA-49-AARE-01 11 55681672 55681672 G T OR5W2 Silent p.P129P 0.10 TCGA-49-AARE-01 11 55890024 55890024 C A OR8H3 Missense_Mutation p.P59H 0.08 deleterious(0) probably_damaging(0.986) TCGA-49-AARE-01 11 55890026 55890026 A C OR8H3 Missense_Mutation p.M60L 0.08 deleterious(0) possibly_damaging(0.607) TCGA-49-AARE-01 11 55944794 55944794 G A OR5J2 Missense_Mutation p.R234K 0.21 tolerated(0.07) benign(0.364) TCGA-49-AARE-01 11 56044062 56044062 G A OR5T1 Silent p.L316L 0.34 TCGA-49-AARE-01 11 56237767 56237767 C G OR5M3 Silent p.V69V 0.49 TCGA-49-AARE-01 11 56237863 56237863 C T OR5M3 Missense_Mutation p.M37I 0.13 tolerated(0.09) benign(0) TCGA-49-AARE-01 11 57003843 57003843 C A APLNR Silent p.V212V 0.42 TCGA-49-AARE-01 11 5842255 5842255 G A OR52N2 Silent p.L230L 0.20 TCGA-49-AARE-01 11 5862441 5862441 C T OR52E6 Silent p.L229L 0.19 TCGA-49-AARE-01 11 59560882 59560882 C G STX3 Silent p.A190A 0.26 TCGA-49-AARE-01 11 60183103 60183103 C A MS4A14 Missense_Mutation p.P254Q 0.16 tolerated(0.31) benign(0.013) TCGA-49-AARE-01 11 6024102 6024102 C A OR56A4 Missense_Mutation p.A93S 0.16 deleterious(0.03) probably_damaging(0.95) TCGA-49-AARE-01 11 60482872 60482872 C G MS4A8 Missense_Mutation p.I246M 0.18 deleterious(0.01) benign(0.046) TCGA-49-AARE-01 11 6048551 6048551 G T OR56A1 Missense_Mutation p.D128E 0.25 deleterious(0.01) benign(0.371) TCGA-49-AARE-01 11 60885796 60885796 C A CD5 Missense_Mutation p.Q82K 0.20 tolerated(0.18) benign(0.034) TCGA-49-AARE-01 11 61131876 61131876 G C TMEM138 Missense_Mutation p.S5T 0.19 tolerated(0.13) benign(0.006) TCGA-49-AARE-01 11 613482 613482 C G IRF7 Missense_Mutation p.V334L 0.12 tolerated(0.58) benign(0.029) TCGA-49-AARE-01 11 62295700 62295700 T C AHNAK Silent p.A2063A 0.20 TCGA-49-AARE-01 11 6232694 6232694 C A FAM160A2 3'UTR 0.14 TCGA-49-AARE-01 11 62381265 62381265 G A ROM1 Missense_Mutation p.R171H 0.16 tolerated(0.08) benign(0.057) TCGA-49-AARE-01 11 62384046 62384046 C A B3GAT3 Nonsense_Mutation p.E281* 0.20 TCGA-49-AARE-01 11 62489399 62489399 C A HNRNPUL2 Nonsense_Mutation p.G459* 0.19 TCGA-49-AARE-01 11 62554750 62554750 G T TAF6L Silent p.S617S 0.17 TCGA-49-AARE-01 11 6260983 6260983 G A CNGA4 Silent p.L78L 0.14 TCGA-49-AARE-01 11 62650416 62650416 G T SLC3A2 Missense_Mutation p.R314L 0.28 tolerated(0.22) benign(0.007) TCGA-49-AARE-01 11 63174114 63174114 C A SLC22A9 Silent p.R407R 0.17 TCGA-49-AARE-01 11 63174123 63174123 C A SLC22A9 Missense_Mutation p.Q410K 0.12 deleterious(0.01) possibly_damaging(0.516) TCGA-49-AARE-01 11 63174164 63174164 C A SLC22A9 Silent p.A423A 0.11 TCGA-49-AARE-01 11 64121277 64121277 C A CCDC88B Silent p.P1308P 0.24 TCGA-49-AARE-01 11 64359398 64359398 C A SLC22A12 Missense_Mutation p.R124S 0.14 tolerated(0.08) possibly_damaging(0.495) TCGA-49-AARE-01 11 6500190 6500190 C A ARFIP2 Splice_Site p.X106_splice 0.19 TCGA-49-AARE-01 11 65390968 65390968 G T PCNXL3 Silent p.R788R 0.29 TCGA-49-AARE-01 11 65810590 65810590 G A GAL3ST3 Silent p.I228I 0.19 TCGA-49-AARE-01 11 66467048 66467048 C A SPTBN2 Missense_Mutation p.G1202V 0.15 tolerated(0.28) benign(0.435) TCGA-49-AARE-01 11 6653760 6653760 C A DCHS1 Missense_Mutation p.G995W 0.38 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 11 66838926 66838926 C T RHOD Silent p.S162S 0.43 TCGA-49-AARE-01 11 68183834 68183834 A T LRP5 Missense_Mutation p.I956F 0.13 tolerated(0.18) probably_damaging(0.946) TCGA-49-AARE-01 11 6913573 6913573 G A OR2D2 Silent p.S53S 0.11 TCGA-49-AARE-01 11 69625265 69625265 G T FGF3 Silent p.S176S 0.47 TCGA-49-AARE-01 11 70282436 70282436 G T CTTN Silent p.S609S 0.26 TCGA-49-AARE-01 11 7063958 7063958 C G NLRP14 Nonsense_Mutation p.S234* 0.30 TCGA-49-AARE-01 11 7064845 7064845 T A NLRP14 Missense_Mutation p.C530S 0.10 tolerated(0.36) possibly_damaging(0.575) TCGA-49-AARE-01 11 7078950 7078950 A G NLRP14 Missense_Mutation p.I778M 0.34 deleterious(0.01) possibly_damaging(0.793) TCGA-49-AARE-01 11 7081288 7081288 G T NLRP14 Missense_Mutation p.D933Y 0.20 deleterious(0.01) possibly_damaging(0.906) TCGA-49-AARE-01 11 71293660 71293660 C A KRTAP5-11 Missense_Mutation p.G75V 0.17 tolerated_low_confidence(0.08) unknown(0) TCGA-49-AARE-01 11 73070879 73070879 G T ARHGEF17 Missense_Mutation p.G1363V 0.17 deleterious(0.04) benign(0.216) TCGA-49-AARE-01 11 75151002 75151002 G C GDPD5 Missense_Mutation p.P493R 0.09 tolerated(0.07) benign(0.3) TCGA-49-AARE-01 11 76869323 76869323 G T MYO7A Missense_Mutation p.G284C 0.39 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 11 77649742 77649742 C A INTS4 Nonsense_Mutation p.G374* 0.46 TCGA-49-AARE-01 11 7818259 7818259 C A OR5P2 Missense_Mutation p.M77I 0.07 deleterious(0) benign(0.078) TCGA-49-AARE-01 11 7949851 7949851 T C OR10A6 Missense_Mutation p.Y120C 0.15 deleterious(0) probably_damaging(0.992) TCGA-49-AARE-01 11 7982840 7982840 G T NLRP10 Missense_Mutation p.R107S 0.49 deleterious(0.04) benign(0.289) TCGA-49-AARE-01 11 82625777 82625777 A G C11orf82 5'UTR 0.56 TCGA-49-AARE-01 11 83809986 83809986 T A DLG2 Silent p.A243A 0.48 TCGA-49-AARE-01 11 88386545 88386545 A G GRM5 Missense_Mutation p.V313A 0.15 deleterious(0) probably_damaging(0.998) TCGA-49-AARE-01 11 92533772 92533772 C A FAT3 Silent p.I2531I 0.35 TCGA-49-AARE-01 11 94179016 94179016 C A MRE11A Missense_Mutation p.K609N 0.17 deleterious_low_confidence(0) benign(0.127) TCGA-49-AARE-01 12 100660851 100660851 C G DEPDC4 Missense_Mutation p.V2L 0.30 deleterious_low_confidence(0) benign(0.097) TCGA-49-AARE-01 12 100955668 100955668 T A NR1H4 Missense_Mutation p.S372T 0.36 tolerated(0.68) benign(0.022) TCGA-49-AARE-01 12 102023258 102023258 G C MYBPC1 Missense_Mutation p.Q50H 0.49 tolerated(0.1) probably_damaging(0.991) TCGA-49-AARE-01 12 10233986 10233986 T C CLEC1A Missense_Mutation p.T81A 0.19 tolerated(0.23) benign(0.015) TCGA-49-AARE-01 12 102813461 102813461 G T IGF1 Silent p.P76P 0.40 TCGA-49-AARE-01 12 10462028 10462028 G A KLRD1 Missense_Mutation p.G17R 0.22 deleterious(0) probably_damaging(0.995) TCGA-49-AARE-01 12 10462029 10462029 G A KLRD1 Missense_Mutation p.G17E 0.20 deleterious(0) probably_damaging(0.993) TCGA-49-AARE-01 12 104697950 104697950 G T EID3 Missense_Mutation p.V80L 0.14 deleterious(0) probably_damaging(0.998) TCGA-49-AARE-01 12 10587131 10587131 T G KLRC2 Splice_Site p.X96_splice 0.07 TCGA-49-AARE-01 12 106804630 106804630 A G POLR3B Silent p.K331K 0.17 TCGA-49-AARE-01 12 10750651 10750651 C T KLRAP1 RNA 0.17 TCGA-49-AARE-01 12 108029157 108029157 C A BTBD11 Silent p.T909T 0.48 TCGA-49-AARE-01 12 108642020 108642020 C T WSCD2 Missense_Mutation p.A533V 0.14 deleterious(0.02) benign(0.004) TCGA-49-AARE-01 12 109293181 109293181 G T DAO Missense_Mutation p.G281V 0.11 deleterious(0.01) probably_damaging(1) TCGA-49-AARE-01 12 111746112 111746112 C A CUX2 Missense_Mutation p.A378D 0.14 deleterious(0) probably_damaging(0.937) TCGA-49-AARE-01 12 111956154 111956154 C G ATXN2 Missense_Mutation p.R515P 0.18 probably_damaging(0.999) TCGA-49-AARE-01 12 112191590 112191590 G T ACAD10 Missense_Mutation p.L975F 0.17 tolerated(0.2) benign(0.005) TCGA-49-AARE-01 12 112191591 112191591 G C ACAD10 Missense_Mutation p.A976P 0.17 tolerated(0.06) probably_damaging(0.999) TCGA-49-AARE-01 12 113826380 113826380 G T PLBD2 Missense_Mutation p.M573I 0.20 tolerated(0.15) benign(0.064) TCGA-49-AARE-01 12 115117432 115117432 A T TBX3 Missense_Mutation p.Y248N 0.23 deleterious(0) probably_damaging(0.997) TCGA-49-AARE-01 12 116450672 116450672 C T MED13L Missense_Mutation p.E404K 0.20 tolerated(0.08) unknown(0) TCGA-49-AARE-01 12 120593229 120593229 C A GCN1L1 Missense_Mutation p.W1149L 0.16 probably_damaging(0.998) TCGA-49-AARE-01 12 122369754 122369754 A T WDR66 Missense_Mutation p.I284F 0.12 deleterious(0.02) benign(0.159) TCGA-49-AARE-01 12 122674728 122674728 G T LRRC43 Missense_Mutation p.Q238H 0.21 tolerated(0.17) benign(0.112) TCGA-49-AARE-01 12 123014624 123014624 T C KNTC1 Missense_Mutation p.I5T 0.23 deleterious(0) benign(0.06) TCGA-49-AARE-01 12 123476366 123476366 C A PITPNM2 Intron 0.30 TCGA-49-AARE-01 12 130919311 130919311 C A RIMBP2 Missense_Mutation p.D724Y 0.16 deleterious(0) probably_damaging(0.959) TCGA-49-AARE-01 12 131311736 131311736 A G STX2 Splice_Site p.X35_splice 0.12 TCGA-49-AARE-01 12 133454165 133454165 C A CHFR Missense_Mutation p.G70V 0.20 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 12 13716158 13716158 G T GRIN2B Missense_Mutation p.H1338Q 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-49-AARE-01 12 14923829 14923829 C A HIST4H4 Nonsense_Mutation p.E64* 0.20 TCGA-49-AARE-01 12 1943750 1943750 G T LRTM2 Missense_Mutation p.V326L 0.25 tolerated(0.27) benign(0.179) TCGA-49-AARE-01 12 20523122 20523122 G T PDE3A Missense_Mutation p.G302C 0.35 deleterious(0.05) benign(0.063) TCGA-49-AARE-01 12 234889 234889 C A IQSEC3 Silent p.A238A 0.33 TCGA-49-AARE-01 12 234890 234890 C A IQSEC3 Missense_Mutation p.P239T 0.33 tolerated(0.21) benign(0.04) TCGA-49-AARE-01 12 27523154 27523154 G T ARNTL2 Missense_Mutation p.S92I 0.24 tolerated(0.2) benign(0.223) TCGA-49-AARE-01 12 29709819 29709819 C A TMTC1 Silent p.R549R 0.19 TCGA-49-AARE-01 12 29709820 29709820 C G TMTC1 Missense_Mutation p.R549P 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-49-AARE-01 12 32491903 32491903 G T BICD1 Silent p.V918V 0.19 TCGA-49-AARE-01 12 39047754 39047754 C A CPNE8 Missense_Mutation p.R542L 0.09 tolerated(0.07) probably_damaging(0.998) TCGA-49-AARE-01 12 40748157 40748157 G T LRRK2 Missense_Mutation p.K2211N 0.39 tolerated(0.18) possibly_damaging(0.753) TCGA-49-AARE-01 12 40748158 40748158 G T LRRK2 Nonsense_Mutation p.E2212* 0.40 TCGA-49-AARE-01 12 41463812 41463812 G C CNTN1 Missense_Mutation p.G1011A 0.15 tolerated_low_confidence(0.91) possibly_damaging(0.794) TCGA-49-AARE-01 12 43777524 43777524 G A ADAMTS20 Missense_Mutation p.T1545I 0.11 tolerated(0.18) benign(0.011) TCGA-49-AARE-01 12 43858419 43858419 G T ADAMTS20 Missense_Mutation p.P495H 0.12 deleterious(0) probably_damaging(0.987) TCGA-49-AARE-01 12 4479532 4479532 G T FGF23 Missense_Mutation p.R245S 0.09 deleterious_low_confidence(0) benign(0.004) TCGA-49-AARE-01 12 45410156 45410156 G C DBX2 Silent p.P311P 0.52 TCGA-49-AARE-01 12 472262 472262 C A KDM5A Missense_Mutation p.G180V 0.16 tolerated(0.3) benign(0.01) TCGA-49-AARE-01 12 4736114 4736114 C A AKAP3 Missense_Mutation p.G652W 0.20 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 12 48095301 48095301 G C RPAP3 Missense_Mutation p.N80K 0.42 tolerated(0.53) probably_damaging(0.932) TCGA-49-AARE-01 12 4853790 4853790 C A GALNT8 Missense_Mutation p.R262S 0.24 deleterious(0) probably_damaging(0.949) TCGA-49-AARE-01 12 4919928 4919928 G T KCNA6 Missense_Mutation p.G241W 0.16 tolerated(0.06) possibly_damaging(0.785) TCGA-49-AARE-01 12 49742867 49742867 G A DNAJC22 Missense_Mutation p.G71E 0.28 tolerated(1) benign(0) TCGA-49-AARE-01 12 50050882 50050882 C T FMNL3 Missense_Mutation p.A233T 0.20 deleterious(0) probably_damaging(0.957) TCGA-49-AARE-01 12 5020560 5020560 G T KCNA1 Missense_Mutation p.G6W 0.21 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-49-AARE-01 12 52284616 52284616 G T ANKRD33 Missense_Mutation p.A296S 0.58 tolerated(0.51) benign(0.023) TCGA-49-AARE-01 12 52651972 52651972 G C KRT121P RNA 0.51 TCGA-49-AARE-01 12 52779105 52779105 C T KRT84 Missense_Mutation p.D89N 0.43 tolerated(0.37) benign(0.076) TCGA-49-AARE-01 12 52908794 52908794 C A KRT5 Missense_Mutation p.G569W 0.33 deleterious(0) unknown(0) TCGA-49-AARE-01 12 54367207 54367207 A T HOXC11 Missense_Mutation p.Y61F 0.25 tolerated(0.46) benign(0.34) TCGA-49-AARE-01 12 54857068 54857068 A T GTSF1 Missense_Mutation p.V44D 0.45 deleterious(0) possibly_damaging(0.602) TCGA-49-AARE-01 12 55420784 55420784 G T NEUROD4 Missense_Mutation p.E187D 0.41 tolerated(0.37) benign(0.035) TCGA-49-AARE-01 12 55421251 55421251 G T NEUROD4 3'UTR 0.48 TCGA-49-AARE-01 12 56332984 56332984 G A DGKA Missense_Mutation p.M163I 0.11 deleterious(0.03) probably_damaging(0.949) TCGA-49-AARE-01 12 56515670 56515670 C G ZC3H10 3'UTR 0.64 TCGA-49-AARE-01 12 6101102 6101102 A C VWF Missense_Mutation p.C2227W 0.19 deleterious(0) probably_damaging(0.963) TCGA-49-AARE-01 12 62986521 62986521 G A MON2 Missense_Mutation p.E1716K 0.19 tolerated_low_confidence(0.05) benign(0.068) TCGA-49-AARE-01 12 63964624 63964624 T A DPY19L2 Silent p.A638A 0.18 TCGA-49-AARE-01 12 6659032 6659032 C A IFFO1 Nonsense_Mutation p.E321* 0.23 TCGA-49-AARE-01 12 70732557 70732557 T C CNOT2 Missense_Mutation p.L378S 0.11 deleterious(0.03) probably_damaging(0.964) TCGA-49-AARE-01 12 70824309 70824309 T A KCNMB4 Missense_Mutation p.L170H 0.55 deleterious(0) probably_damaging(0.986) TCGA-49-AARE-01 12 78444660 78444660 G T NAV3 Missense_Mutation p.R750L 0.69 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 12 78591074 78591074 T C NAV3 Silent p.D2091D 0.56 TCGA-49-AARE-01 12 7970504 7970504 G T SLC2A14 Missense_Mutation p.P423T 0.28 deleterious(0.02) probably_damaging(0.948) TCGA-49-AARE-01 12 80651719 80651719 C A OTOGL Missense_Mutation p.A600E 0.56 tolerated(0.29) benign(0.004) TCGA-49-AARE-01 12 81102312 81102312 G T MYF6 Missense_Mutation p.A177S 0.30 tolerated(1) benign(0.001) TCGA-49-AARE-01 12 85413467 85413467 C T TSPAN19 Missense_Mutation p.G130R 0.12 tolerated(0.08) probably_damaging(0.992) TCGA-49-AARE-01 12 86374092 86374092 C A MGAT4C Missense_Mutation p.V138L 0.55 tolerated(0.12) probably_damaging(0.98) TCGA-49-AARE-01 12 8902665 8902665 C T RIMKLB Missense_Mutation p.P128L 0.19 deleterious(0) possibly_damaging(0.77) TCGA-49-AARE-01 12 89743160 89743160 C A DUSP6 Missense_Mutation p.Q339H 0.42 deleterious(0) probably_damaging(0.998) TCGA-49-AARE-01 12 91347701 91347701 C A CCER1 Silent p.P273P 0.48 TCGA-49-AARE-01 12 9254176 9254176 G T A2M Missense_Mutation p.P454Q 0.24 tolerated(0.31) benign(0.106) TCGA-49-AARE-01 12 9317736 9317736 C A PZP Missense_Mutation p.R829L 0.10 deleterious(0) possibly_damaging(0.496) TCGA-49-AARE-01 12 9333631 9333631 A T PZP Missense_Mutation p.V596E 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-49-AARE-01 12 99007972 99007972 C A IKBIP Silent p.T148T 0.33 TCGA-49-AARE-01 13 100764141 100764141 G T PCCA Missense_Mutation p.R77L 0.22 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 13 101735471 101735471 A T NALCN Missense_Mutation p.L1221Q 0.34 deleterious(0) probably_damaging(0.961) TCGA-49-AARE-01 13 102227830 102227830 G T ITGBL1 Silent p.V173V 0.17 TCGA-49-AARE-01 13 108861354 108861354 C A LIG4 Missense_Mutation p.A755S 0.13 tolerated(0.32) benign(0.143) TCGA-49-AARE-01 13 109772760 109772760 C A MYO16 Missense_Mutation p.Q1139K 0.24 tolerated(0.14) benign(0.407) TCGA-49-AARE-01 13 110804757 110804757 C A COL4A1 Missense_Mutation p.G1618C 0.29 unknown(0) TCGA-49-AARE-01 13 114083304 114083304 T G ADPRHL1 Silent p.A203A 0.16 TCGA-49-AARE-01 13 19748241 19748241 T C TUBA3C Missense_Mutation p.Q372R 0.18 tolerated_low_confidence(0.05) benign(0.407) TCGA-49-AARE-01 13 20012247 20012247 T C TPTE2 Missense_Mutation p.I340M 0.15 tolerated(0.22) benign(0.063) TCGA-49-AARE-01 13 20067642 20067642 C A TPTE2 Splice_Site p.X4_splice 0.11 TCGA-49-AARE-01 13 24871701 24871701 G C SPATA13 Silent p.L1137L 0.23 TCGA-49-AARE-01 13 24871702 24871702 G T SPATA13 Missense_Mutation p.G1138W 0.25 deleterious(0) possibly_damaging(0.708) TCGA-49-AARE-01 13 24890244 24890244 G T C1QTNF9 Missense_Mutation p.G35C 0.34 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 13 25265111 25265111 C - ATP12A Frame_Shift_Del p.P271Lfs*2 0.28 TCGA-49-AARE-01 13 28979928 28979928 C A FLT1 Nonsense_Mutation p.G514* 0.14 TCGA-49-AARE-01 13 31540357 31540357 A G TEX26 Splice_Site p.X157_splice 0.09 TCGA-49-AARE-01 13 32698435 32698435 G T FRY Missense_Mutation p.Q159H 0.11 tolerated(0.25) possibly_damaging(0.719) TCGA-49-AARE-01 13 32937356 32937356 A G BRCA2 Missense_Mutation p.K2673E 0.12 deleterious(0) probably_damaging(0.966) TCGA-49-AARE-01 13 35923266 35923266 G T NBEA Missense_Mutation p.K1975N 0.18 deleterious(0.02) benign(0.088) TCGA-49-AARE-01 13 39262040 39262040 C T FREM2 Missense_Mutation p.P187S 0.15 deleterious(0.04) benign(0.178) TCGA-49-AARE-01 13 41239822 41239822 C G FOXO1 Silent p.S176S 0.50 TCGA-49-AARE-01 13 41533077 41533077 C A ELF1 Missense_Mutation p.G50C 0.16 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 13 41946353 41946353 A T NAA16 Missense_Mutation p.L654F 0.36 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 13 43639870 43639870 G A DNAJC15 Missense_Mutation p.A53T 0.13 tolerated(0.05) possibly_damaging(0.728) TCGA-49-AARE-01 13 46077385 46077385 G T COG3 Missense_Mutation p.A499S 0.26 deleterious(0.02) benign(0.141) TCGA-49-AARE-01 13 46942376 46942376 G C KIAA0226L Silent p.A209A 0.13 TCGA-49-AARE-01 13 47011881 47011881 A G PPP1R2P4 RNA 0.18 TCGA-49-AARE-01 13 49037874 49037874 T A RB1 Missense_Mutation p.M705K 0.31 deleterious(0) probably_damaging(0.989) TCGA-49-AARE-01 13 52548340 52548340 C A ATP7B Missense_Mutation p.R339M 0.41 tolerated(0.09) benign(0.128) TCGA-49-AARE-01 13 53624310 53624310 C G OLFM4 Missense_Mutation p.L313V 0.30 tolerated(0.38) probably_damaging(0.919) TCGA-49-AARE-01 13 53625016 53625016 G C OLFM4 3'UTR 0.44 TCGA-49-AARE-01 13 60590276 60590276 C A DIAPH3 Missense_Mutation p.W210C 0.16 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 13 73293104 73293104 T C MZT1 Missense_Mutation p.T71A 0.13 tolerated(0.28) benign(0.192) TCGA-49-AARE-01 13 75863150 75863150 C A TBC1D4 Missense_Mutation p.D1195Y 0.22 deleterious(0) benign(0.089) TCGA-49-AARE-01 13 78188076 78188076 C G SCEL Silent p.V479V 0.23 TCGA-49-AARE-01 13 78293704 78293704 G C SLAIN1 Missense_Mutation p.E58Q 0.29 tolerated(1) unknown(0) TCGA-49-AARE-01 13 84454183 84454183 G A SLITRK1 Missense_Mutation p.P487L 0.21 deleterious(0) probably_damaging(0.978) TCGA-49-AARE-01 13 86369979 86369979 C A SLITRK6 Missense_Mutation p.C222F 0.41 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 13 96413052 96413052 G T DNAJC3 Missense_Mutation p.R283I 0.14 deleterious(0.01) possibly_damaging(0.558) TCGA-49-AARE-01 13 98828967 98828967 C - RNF113B Frame_Shift_Del p.G175Afs*133 0.13 TCGA-49-AARE-01 14 100363557 100363557 A G EML1 Silent p.A270A 0.17 TCGA-49-AARE-01 14 100795848 100795848 A T SLC25A47 Missense_Mutation p.S265C 0.25 deleterious(0) probably_damaging(0.986) TCGA-49-AARE-01 14 101349155 101349155 T A RTL1 Missense_Mutation p.L657F 0.50 deleterious(0) probably_damaging(0.997) TCGA-49-AARE-01 14 101442870 101442870 G C SNORD114-19 RNA 0.22 TCGA-49-AARE-01 14 102469181 102469181 G T DYNC1H1 Missense_Mutation p.V1588F 0.16 probably_damaging(0.983) TCGA-49-AARE-01 14 106780530 106780530 C A IGHV4-28 Missense_Mutation p.V112L 0.17 tolerated(0.06) benign(0.037) TCGA-49-AARE-01 14 20483117 20483117 G T OR4K14 Missense_Mutation p.T79N 0.27 deleterious(0) probably_damaging(0.971) TCGA-49-AARE-01 14 20586359 20586359 C A OR4K17 Missense_Mutation p.S265Y 0.22 deleterious(0.01) possibly_damaging(0.464) TCGA-49-AARE-01 14 21458641 21458641 T A METTL17 Missense_Mutation p.M83K 0.14 tolerated(0.09) benign(0.133) TCGA-49-AARE-01 14 21458642 21458642 G T METTL17 Missense_Mutation p.M83I 0.14 tolerated(0.46) benign(0.004) TCGA-49-AARE-01 14 21862223 21862223 C A CHD8 Missense_Mutation p.A1911S 0.16 tolerated(0.38) benign(0.004) TCGA-49-AARE-01 14 22251573 22251573 G T TRAV7 Missense_Mutation p.G64C 0.18 deleterious(0) possibly_damaging(0.696) TCGA-49-AARE-01 14 23058082 23058082 C A DAD1 5'UTR 0.12 TCGA-49-AARE-01 14 23842327 23842327 G T IL25 5'UTR 0.22 TCGA-49-AARE-01 14 23869531 23869531 C A MYH6 Missense_Mutation p.E505D 0.15 deleterious(0) possibly_damaging(0.689) TCGA-49-AARE-01 14 23902945 23902945 T A MYH7 5'UTR 0.12 TCGA-49-AARE-01 14 24546537 24546537 C A CPNE6 Missense_Mutation p.P492T 0.21 tolerated(0.17) benign(0.082) TCGA-49-AARE-01 14 24546538 24546538 C T CPNE6 Missense_Mutation p.P492L 0.21 tolerated(0.21) benign(0.016) TCGA-49-AARE-01 14 25043493 25043493 C A CTSG Missense_Mutation p.Q184H 0.32 deleterious(0.02) probably_damaging(0.997) TCGA-49-AARE-01 14 29237101 29237101 G A FOXG1 Missense_Mutation p.G206S 0.18 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 14 31609180 31609180 C T HECTD1 Missense_Mutation p.R966Q 0.22 tolerated(0.56) benign(0.015) TCGA-49-AARE-01 14 33015074 33015074 G A AKAP6 Silent p.L405L 0.23 TCGA-49-AARE-01 14 33165245 33165245 G T AKAP6 Missense_Mutation p.D977Y 0.15 deleterious(0) probably_damaging(0.996) TCGA-49-AARE-01 14 34400358 34400358 C G EGLN3 Missense_Mutation p.G141R 0.28 tolerated(0.29) benign(0.059) TCGA-49-AARE-01 14 38724800 38724800 C A CLEC14A Missense_Mutation p.C143F 0.19 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 14 45620637 45620637 A T FANCM Missense_Mutation p.N319I 0.22 deleterious(0) benign(0.416) TCGA-49-AARE-01 14 50585243 50585243 C T SOS2 Missense_Mutation p.R1273Q 0.18 deleterious_low_confidence(0.03) benign(0.12) TCGA-49-AARE-01 14 51477130 51477130 T A TRIM9 Missense_Mutation p.K375M 0.20 deleterious(0) probably_damaging(0.998) TCGA-49-AARE-01 14 60976573 60976573 C A SIX6 Missense_Mutation p.P153T 0.18 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 14 62567336 62567336 A T SYT16 Missense_Mutation p.S617C 0.25 deleterious(0) probably_damaging(0.997) TCGA-49-AARE-01 14 63447788 63447788 C A KCNH5 Silent p.L248L 0.19 TCGA-49-AARE-01 14 64687232 64687232 C T SYNE2 Silent p.T6646T 0.13 TCGA-49-AARE-01 14 65406522 65406522 A T GPX2 Missense_Mutation p.L86H 0.18 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 14 68265321 68265321 G A ZFYVE26 Missense_Mutation p.S553L 0.23 tolerated(0.16) benign(0.085) TCGA-49-AARE-01 14 73959079 73959079 G T HEATR4 Intron 0.11 TCGA-49-AARE-01 14 74759496 74759496 G A ABCD4 Silent p.V297V 0.17 TCGA-49-AARE-01 14 74876070 74876070 C A SYNDIG1L Missense_Mutation p.E126D 0.17 tolerated(0.23) probably_damaging(0.97) TCGA-49-AARE-01 14 75136397 75136397 C G AREL1 Silent p.L623L 0.10 TCGA-49-AARE-01 14 76249513 76249513 G T TTLL5 Nonsense_Mutation p.E876* 0.17 TCGA-49-AARE-01 14 77580506 77580506 G A CIPC Missense_Mutation p.E349K 0.17 deleterious(0) probably_damaging(0.995) TCGA-49-AARE-01 14 77732451 77732451 G A NGB 3'UTR 0.25 TCGA-49-AARE-01 14 81251695 81251695 C A CEP128 Silent p.L585L 0.24 TCGA-49-AARE-01 14 88477439 88477439 C A GPR65 Missense_Mutation p.S83Y 0.19 deleterious(0.01) probably_damaging(0.975) TCGA-49-AARE-01 14 89160721 89160721 C A EML5 Missense_Mutation p.K823N 0.25 deleterious(0.01) possibly_damaging(0.848) TCGA-49-AARE-01 14 94088394 94088394 A T UNC79 Missense_Mutation p.L1428F 0.24 tolerated_low_confidence(0.07) benign(0.002) TCGA-49-AARE-01 14 94929480 94929480 T C SERPINA9 Missense_Mutation p.T420A 0.22 deleterious(0.04) benign(0.003) TCGA-49-AARE-01 14 95670102 95670102 T A CLMN Silent p.P528P 0.27 TCGA-49-AARE-01 14 96730139 96730139 G T BDKRB1 Silent p.L40L 0.25 TCGA-49-AARE-01 14 99640474 99640474 C A BCL11B 3'UTR 0.28 TCGA-49-AARE-01 14 99723952 99723952 T A BCL11B Nonsense_Mutation p.K95* 0.25 TCGA-49-AARE-01 15 100514546 100514546 C A ADAMTS17 3'UTR 0.36 TCGA-49-AARE-01 15 101565128 101565128 G A LRRK1 Missense_Mutation p.E730K 0.13 deleterious(0.02) probably_damaging(0.94) TCGA-49-AARE-01 15 102346307 102346307 C A OR4F6 Missense_Mutation p.P129T 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-49-AARE-01 15 102346658 102346658 G C OR4F6 Missense_Mutation p.V246L 0.12 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-49-AARE-01 15 23890377 23890377 G T MAGEL2 Missense_Mutation p.P235Q 0.13 deleterious(0.03) possibly_damaging(0.618) TCGA-49-AARE-01 15 23890378 23890378 G T MAGEL2 Missense_Mutation p.P235T 0.13 deleterious(0) benign(0.252) TCGA-49-AARE-01 15 24921972 24921972 G C NPAP1 Missense_Mutation p.A320P 0.19 tolerated(0.21) probably_damaging(0.964) TCGA-49-AARE-01 15 24923425 24923425 C A NPAP1 Missense_Mutation p.S804Y 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.729) TCGA-49-AARE-01 15 24923975 24923975 G T NPAP1 Silent p.G987G 0.21 TCGA-49-AARE-01 15 25616244 25616244 C A UBE3A Silent p.V362V 0.14 TCGA-49-AARE-01 15 27777930 27777930 T G GABRG3 Missense_Mutation p.I436R 0.24 deleterious(0) probably_damaging(0.915) TCGA-49-AARE-01 15 28273120 28273120 A G OCA2 Missense_Mutation p.Y138H 0.22 tolerated_low_confidence(0.52) benign(0.001) TCGA-49-AARE-01 15 28513647 28513647 C A HERC2 Missense_Mutation p.C521F 0.09 benign(0.346) TCGA-49-AARE-01 15 34064236 34064236 C A RYR3 Missense_Mutation p.H2978N 0.20 benign(0.269) TCGA-49-AARE-01 15 34080600 34080600 C A RYR3 Silent p.V3257V 0.22 TCGA-49-AARE-01 15 34376593 34376593 C A EMC7 Missense_Mutation p.G224V 0.18 tolerated(0.18) unknown(0) TCGA-49-AARE-01 15 34396410 34396410 C T PGBD4 Missense_Mutation p.R560C 0.19 deleterious(0.01) probably_damaging(0.958) TCGA-49-AARE-01 15 34649607 34649607 G A NUTM1 Missense_Mutation p.G1105E 0.13 tolerated(0.09) benign(0.263) TCGA-49-AARE-01 15 35082586 35082586 G T ACTC1 3'UTR 0.24 TCGA-49-AARE-01 15 35261749 35261749 G A AQR Silent p.F22F 0.12 TCGA-49-AARE-01 15 35529917 35529917 T A ANP32AP1 RNA 0.11 TCGA-49-AARE-01 15 35830569 35830569 G T DPH6 Missense_Mutation p.T73N 0.16 tolerated(0.43) benign(0.01) TCGA-49-AARE-01 15 38643344 38643344 G T SPRED1 Nonsense_Mutation p.E272* 0.13 TCGA-49-AARE-01 15 40500957 40500957 C G BUB1B Missense_Mutation p.T710S 0.33 tolerated(0.21) possibly_damaging(0.643) TCGA-49-AARE-01 15 40917006 40917006 A T CASC5 Missense_Mutation p.N1541I 0.19 deleterious(0.01) benign(0.308) TCGA-49-AARE-01 15 42117533 42117533 A C MAPKBP1 Missense_Mutation p.S1482R 0.21 tolerated(0.11) probably_damaging(0.943) TCGA-49-AARE-01 15 42276077 42276077 C T PLA2G4E Missense_Mutation p.A828T 0.69 deleterious(0.01) benign(0.219) TCGA-49-AARE-01 15 42717188 42717188 G A ZNF106 Silent p.G1655G 0.10 TCGA-49-AARE-01 15 45059763 45059763 C A TRIM69 Missense_Mutation p.F432L 0.14 tolerated(0.66) benign(0.007) TCGA-49-AARE-01 15 48513135 48513135 C T SLC12A1 Silent p.N190N 0.14 TCGA-49-AARE-01 15 49329951 49329951 C A SECISBP2L Missense_Mutation p.A14S 0.30 deleterious(0) possibly_damaging(0.849) TCGA-49-AARE-01 15 49436467 49436471 CCCCA GCCCCT COPS2 Frame_Shift_Ins p.W67Rfs*4 0.14 TCGA-49-AARE-01 15 52662434 52662434 C T MYO5A Missense_Mutation p.E1000K 0.25 tolerated(0.05) benign(0.014) TCGA-49-AARE-01 15 54306543 54306543 G T UNC13C Missense_Mutation p.K481N 0.20 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-49-AARE-01 15 54841860 54841860 A G UNC13C Missense_Mutation p.K1950E 0.13 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-49-AARE-01 15 60297399 60297399 C A FOXB1 Missense_Mutation p.D79E 0.16 deleterious(0.04) benign(0.192) TCGA-49-AARE-01 15 62219444 62219444 G A VPS13C Missense_Mutation p.T2121I 0.15 deleterious(0) benign(0.097) TCGA-49-AARE-01 15 63631145 63631145 C A CA12 Splice_Site p.X250_splice 0.14 TCGA-49-AARE-01 15 65489712 65489712 C A CILP Missense_Mutation p.R971L 0.11 deleterious(0.01) probably_damaging(0.994) TCGA-49-AARE-01 15 65756096 65756096 C A DPP8 Intron 0.24 TCGA-49-AARE-01 15 65917018 65917018 C A SLC24A1 Nonsense_Mutation p.Y200* 0.42 TCGA-49-AARE-01 15 68609676 68609676 C T ITGA11 Missense_Mutation p.C881Y 0.32 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 15 74628287 74628287 G T CCDC33 Missense_Mutation p.D721Y 0.15 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-49-AARE-01 15 75042161 75042161 C A CYP1A2 Missense_Mutation p.L28I 0.28 tolerated(0.63) benign(0.002) TCGA-49-AARE-01 15 75111609 75111609 G T LMAN1L Silent p.L238L 0.14 TCGA-49-AARE-01 15 78894371 78894371 C T CHRNA3 Missense_Mutation p.G205S 0.23 tolerated(0.19) probably_damaging(1) TCGA-49-AARE-01 15 79063955 79063955 C - ADAMTS7 Frame_Shift_Del p.G783Vfs*174 0.50 TCGA-49-AARE-01 15 82444493 82444493 C A EFTUD1 Nonsense_Mutation p.E768* 0.33 TCGA-49-AARE-01 15 84257465 84257465 G T SH3GL3 Silent p.V260V 0.30 TCGA-49-AARE-01 15 89738674 89738674 G C ABHD2 3'UTR 0.38 TCGA-49-AARE-01 15 90026402 90026402 C T RHCG Missense_Mutation p.G140R 0.37 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 15 90349302 90349302 C A ANPEP Silent p.V171V 0.11 TCGA-49-AARE-01 15 91489895 91489895 G T UNC45A Silent p.T417T 0.44 TCGA-49-AARE-01 15 93007462 93007462 C T ST8SIA2 Silent p.N325N 0.07 TCGA-49-AARE-01 15 94858807 94858807 C T MCTP2 Missense_Mutation p.A193V 0.24 tolerated(0.07) benign(0.018) TCGA-49-AARE-01 15 99434665 99434665 G C IGF1R Missense_Mutation p.C251S 0.33 deleterious(0) probably_damaging(0.982) TCGA-49-AARE-01 15 99715327 99715327 G A TTC23 Nonsense_Mutation p.Q265* 0.09 TCGA-49-AARE-01 16 14328123 14328123 G T MKL2 Missense_Mutation p.G272C 0.36 deleterious(0.02) probably_damaging(0.979) TCGA-49-AARE-01 16 17228474 17228474 C A XYLT1 Missense_Mutation p.R628L 0.25 deleterious(0.02) possibly_damaging(0.759) TCGA-49-AARE-01 16 19867835 19867835 G T IQCK Missense_Mutation p.V277L 0.37 tolerated_low_confidence(0.42) benign(0.058) TCGA-49-AARE-01 16 20554562 20554562 G T ACSM2B Missense_Mutation p.A435D 0.16 tolerated(0.08) benign(0.009) TCGA-49-AARE-01 16 20565099 20565099 C A ACSM2B Missense_Mutation p.G247V 0.18 tolerated(0.31) possibly_damaging(0.562) TCGA-49-AARE-01 16 20748212 20748212 T C THUMPD1 Missense_Mutation p.D351G 0.37 deleterious_low_confidence(0.01) benign(0) TCGA-49-AARE-01 16 23226504 23226504 T C SCNN1G Missense_Mutation p.I555T 0.13 deleterious(0) possibly_damaging(0.804) TCGA-49-AARE-01 16 23767047 23767047 T A CHP2 Missense_Mutation p.Y45N 0.14 tolerated(0.12) probably_damaging(0.928) TCGA-49-AARE-01 16 24801197 24801197 A T TNRC6A Missense_Mutation p.S412C 0.15 deleterious(0.02) benign(0.243) TCGA-49-AARE-01 16 28917031 28917031 C G RABEP2 Missense_Mutation p.Q495H 0.42 deleterious(0.03) benign(0.051) TCGA-49-AARE-01 16 29469306 29469306 G A SLX1B Silent p.E256E 0.18 TCGA-49-AARE-01 16 3019681 3019681 G A PAQR4 Silent p.A2A 0.38 TCGA-49-AARE-01 16 30735531 30735535 GCAAT - SRCAP Frame_Shift_Del p.A1596Sfs*250 0.30 TCGA-49-AARE-01 16 47621595 47621595 T C PHKB Missense_Mutation p.V264A 0.17 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 16 51171291 51171291 T C SALL1 Missense_Mutation p.Q1236R 0.44 tolerated(0.18) possibly_damaging(0.694) TCGA-49-AARE-01 16 53913827 53913827 G C FTO Silent p.V349V 0.15 TCGA-49-AARE-01 16 55527168 55527168 G A MMP2 Missense_Mutation p.A479T 0.26 tolerated(0.7) benign(0.227) TCGA-49-AARE-01 16 55703550 55703550 G T SLC6A2 Silent p.L116L 0.28 TCGA-49-AARE-01 16 55855414 55855414 G T CES1 Silent p.R187R 0.12 TCGA-49-AARE-01 16 56918107 56918107 A T SLC12A3 Nonsense_Mutation p.K606* 0.17 TCGA-49-AARE-01 16 56933457 56933457 G A SLC12A3 Silent p.L892L 0.34 TCGA-49-AARE-01 16 57416227 57416227 G T CX3CL1 Silent p.T159T 0.30 TCGA-49-AARE-01 16 57954406 57954406 G T CNGB1 Silent p.A562A 0.29 TCGA-49-AARE-01 16 58713913 58713913 C A SLC38A7 Nonsense_Mutation p.E40* 0.29 TCGA-49-AARE-01 16 61760989 61760989 G A CDH8 Intron 0.18 TCGA-49-AARE-01 16 61935370 61935370 G A CDH8 Missense_Mutation p.T87I 0.36 deleterious(0) possibly_damaging(0.541) TCGA-49-AARE-01 16 66551779 66551779 C A TK2 Missense_Mutation p.G151W 0.12 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 16 68156519 68156519 C T NFATC3 Missense_Mutation p.P245S 0.24 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 16 68362980 68362980 T A PRMT7 Silent p.P98P 0.21 TCGA-49-AARE-01 16 71163613 71163613 G T HYDIN Missense_Mutation p.A386E 0.11 benign(0.002) TCGA-49-AARE-01 16 71606535 71606535 C A TAT Missense_Mutation p.L155F 0.29 deleterious(0.05) probably_damaging(0.913) TCGA-49-AARE-01 16 76482689 76482689 C A CNTNAP4 Silent p.S231S 0.41 TCGA-49-AARE-01 16 77325281 77325281 C T ADAMTS18 Missense_Mutation p.R1095K 0.15 tolerated(0.96) benign(0.105) TCGA-49-AARE-01 16 789665 789665 C A NARFL Missense_Mutation p.G47V 0.15 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 16 81124217 81124217 T A GCSH Missense_Mutation p.N73Y 0.45 deleterious(0) possibly_damaging(0.873) TCGA-49-AARE-01 16 83948929 83948929 G A MLYCD Silent p.V439V 0.14 TCGA-49-AARE-01 16 84215875 84215875 C A TAF1C Missense_Mutation p.W218C 0.53 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 16 85682211 85682211 A T GSE1 Missense_Mutation p.S94C 0.14 deleterious(0.01) unknown(0) TCGA-49-AARE-01 16 86601114 86601114 C A FOXC2 Missense_Mutation p.P58H 0.28 deleterious(0) probably_damaging(0.998) TCGA-49-AARE-01 16 86612277 86612277 G T FOXL1 5'UTR 0.27 TCGA-49-AARE-01 16 87445622 87445622 T C ZCCHC14 Missense_Mutation p.H765R 0.19 deleterious_low_confidence(0.02) unknown(0) TCGA-49-AARE-01 16 89220592 89220592 A C ACSF3 Missense_Mutation p.I570L 0.25 tolerated(1) benign(0) TCGA-49-AARE-01 16 89294480 89294480 G C ZNF778 Missense_Mutation p.G567A 0.13 deleterious(0.01) probably_damaging(0.989) TCGA-49-AARE-01 16 89598915 89598915 G C SPG7 Missense_Mutation p.A399P 0.08 deleterious(0.05) possibly_damaging(0.756) TCGA-49-AARE-01 16 90160925 90160925 C G TUBB8P7 RNA 0.26 TCGA-49-AARE-01 17 11520897 11520897 G A DNAH9 Silent p.L358L 0.28 TCGA-49-AARE-01 17 11795210 11795210 C T DNAH9 Silent p.I3743I 0.37 TCGA-49-AARE-01 17 14683426 14683426 T A AC005863.1 RNA 0.46 TCGA-49-AARE-01 17 16525928 16525928 C A ZNF624 Nonsense_Mutation p.G758* 0.38 TCGA-49-AARE-01 17 16703481 16703481 G A CCDC144A 3'UTR 0.22 TCGA-49-AARE-01 17 17077251 17077251 G T MPRIP Missense_Mutation p.Q817H 0.34 tolerated(0.08) benign(0.023) TCGA-49-AARE-01 17 25630661 25630661 G C WSB1 Missense_Mutation p.G160R 0.13 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 17 25958198 25958198 G C LGALS9 5'UTR 0.29 TCGA-49-AARE-01 17 26094810 26094810 C A NOS2 Missense_Mutation p.K696N 0.33 tolerated(0.74) benign(0.021) TCGA-49-AARE-01 17 26950802 26950802 C A KIAA0100 Missense_Mutation p.Q1645H 0.29 tolerated(0.1) benign(0.002) TCGA-49-AARE-01 17 27239797 27239797 C A PHF12 Missense_Mutation p.V598F 0.09 tolerated(0.49) benign(0.199) TCGA-49-AARE-01 17 28544191 28544191 G T SLC6A4 Missense_Mutation p.S277Y 0.19 deleterious(0) probably_damaging(0.991) TCGA-49-AARE-01 17 28887200 28887200 G T TBC1D29 Silent p.G26G 0.17 TCGA-49-AARE-01 17 32598820 32598820 G T CCL7 Nonstop_Mutation p.*100Lext*16 0.27 TCGA-49-AARE-01 17 32962022 32962022 C A TMEM132E Missense_Mutation p.F541L 0.13 deleterious(0) possibly_damaging(0.775) TCGA-49-AARE-01 17 33269543 33269543 C A CCT6B Missense_Mutation p.C282F 0.19 deleterious(0.02) benign(0.311) TCGA-49-AARE-01 17 35932010 35932010 C T SYNRG Missense_Mutation p.M326I 0.17 deleterious(0.04) benign(0.002) TCGA-49-AARE-01 17 36486060 36486060 C T GPR179 Missense_Mutation p.R1131K 0.13 deleterious(0.04) probably_damaging(0.996) TCGA-49-AARE-01 17 37334315 37334315 G C CACNB1 Missense_Mutation p.I356M 0.13 deleterious(0) possibly_damaging(0.841) TCGA-49-AARE-01 17 38145069 38145069 G A PSMD3 Missense_Mutation p.R228H 0.17 deleterious(0) probably_damaging(0.973) TCGA-49-AARE-01 17 3844521 3844521 T A ATP2A3 Missense_Mutation p.Y615F 0.18 deleterious(0.03) benign(0.071) TCGA-49-AARE-01 17 38859684 38859684 C T KRT24 Missense_Mutation p.G88S 0.29 tolerated(0.21) unknown(0) TCGA-49-AARE-01 17 39389091 39389091 T G KRTAP9-3 Missense_Mutation p.L113R 0.15 tolerated(0.73) probably_damaging(1) TCGA-49-AARE-01 17 3955395 3955395 C G ZZEF1 Missense_Mutation p.E1824Q 0.30 deleterious(0.01) probably_damaging(0.947) TCGA-49-AARE-01 17 39636936 39636936 G C KRT35 Silent p.P138P 0.34 TCGA-49-AARE-01 17 40269571 40269571 C A KAT2A Missense_Mutation p.R491L 0.11 deleterious(0) probably_damaging(0.96) TCGA-49-AARE-01 17 40666439 40666439 A T ATP6V0A1 Missense_Mutation p.E795V 0.14 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 17 40847634 40847634 C A CNTNAP1 Silent p.R1030R 0.24 TCGA-49-AARE-01 17 44803949 44803949 G T NSF Missense_Mutation p.C599F 0.15 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 17 4575248 4575248 C G PELP1 Missense_Mutation p.G1013A 0.62 unknown(0) TCGA-49-AARE-01 17 46628037 46628037 G T HOXB3 Missense_Mutation p.Q319K 0.57 tolerated(0.25) benign(0.023) TCGA-49-AARE-01 17 47394859 47394859 C T ZNF652 Missense_Mutation p.E77K 0.28 tolerated(0.36) benign(0.058) TCGA-49-AARE-01 17 47656596 47656596 G T NXPH3 Silent p.R231R 0.31 TCGA-49-AARE-01 17 48543082 48543082 G C CHAD Silent p.L308L 0.14 TCGA-49-AARE-01 17 51901178 51901178 C G KIF2B Missense_Mutation p.Q262E 0.24 deleterious(0) possibly_damaging(0.834) TCGA-49-AARE-01 17 5317450 5317450 T A NUP88 Missense_Mutation p.T158S 0.41 tolerated(0.15) benign(0.102) TCGA-49-AARE-01 17 54305318 54305318 T C ANKFN1 Missense_Mutation p.I21T 0.29 tolerated_low_confidence(0.45) benign(0.001) TCGA-49-AARE-01 17 54981726 54981726 T A TRIM25 Nonsense_Mutation p.K273* 0.25 TCGA-49-AARE-01 17 55962640 55962640 C A CUEDC1 Missense_Mutation p.G96C 0.15 tolerated(0.07) possibly_damaging(0.881) TCGA-49-AARE-01 17 56385927 56385927 C A BZRAP1 Missense_Mutation p.G1569V 0.15 deleterious(0.01) benign(0.049) TCGA-49-AARE-01 17 57741202 57741202 G T CLTC Splice_Site p.X457_splice 0.15 TCGA-49-AARE-01 17 61877827 61877827 G T DDX42 Splice_Site p.X158_splice 0.26 TCGA-49-AARE-01 17 61973906 61973906 G T CSH1 5'UTR 0.23 TCGA-49-AARE-01 17 64024486 64024486 C G CEP112 Missense_Mutation p.C514S 0.13 tolerated(1) benign(0.015) TCGA-49-AARE-01 17 66982403 66982403 C G ABCA9 Missense_Mutation p.E1370D 0.24 deleterious(0.02) possibly_damaging(0.791) TCGA-49-AARE-01 17 67081803 67081803 C A ABCA6 Missense_Mutation p.R1331I 0.20 deleterious(0) possibly_damaging(0.857) TCGA-49-AARE-01 17 7077239 7077239 G A ASGR1 Intron 0.25 TCGA-49-AARE-01 17 7100278 7100278 T A DLG4 Missense_Mutation p.Y337F 0.38 tolerated(0.1) benign(0.204) TCGA-49-AARE-01 17 71348661 71348661 G T SDK2 Silent p.V1903V 0.50 TCGA-49-AARE-01 17 72306205 72306205 T A DNAI2 Missense_Mutation p.L466H 0.17 deleterious(0.01) benign(0.08) TCGA-49-AARE-01 17 72306245 72306245 G T DNAI2 Silent p.L479L 0.23 TCGA-49-AARE-01 17 72832379 72832379 G T TMEM104 Silent p.V348V 0.20 TCGA-49-AARE-01 17 73328816 73328816 G T GRB2 Missense_Mutation p.F47L 0.10 tolerated(0.33) benign(0.003) TCGA-49-AARE-01 17 74013880 74013880 C A EVPL Silent p.R550R 0.34 TCGA-49-AARE-01 17 74936518 74936518 C T MGAT5B Missense_Mutation p.P549L 0.19 deleterious(0) probably_damaging(0.978) TCGA-49-AARE-01 17 7577121 7577121 G C TP53 Missense_Mutation p.R273G 0.46 deleterious(0) probably_damaging(0.997) TCGA-49-AARE-01 17 76803528 76803528 C A USP36 Missense_Mutation p.G533V 0.22 tolerated(0.13) possibly_damaging(0.477) TCGA-49-AARE-01 17 76803696 76803696 T C USP36 Missense_Mutation p.K477R 0.18 tolerated(0.47) benign(0.03) TCGA-49-AARE-01 17 78013753 78013753 G T CCDC40 Missense_Mutation p.G79V 0.12 tolerated_low_confidence(0.26) benign(0.005) TCGA-49-AARE-01 17 78071179 78071179 C A CCDC40 Silent p.R1053R 0.15 TCGA-49-AARE-01 17 79089930 79089930 C T BAIAP2 Intron 0.29 TCGA-49-AARE-01 17 79409059 79409059 G - RP11-1055B8.7 Frame_Shift_Del p.A229Rfs*71 0.27 TCGA-49-AARE-01 17 79872287 79872287 C T SIRT7 Silent p.R233R 0.17 TCGA-49-AARE-01 17 9820432 9820432 C A GAS7 3'UTR 0.50 TCGA-49-AARE-01 18 21128055 21128055 C G NPC1 Missense_Mutation p.A558P 0.18 deleterious(0) probably_damaging(0.995) TCGA-49-AARE-01 18 2772322 2772322 G A SMCHD1 Silent p.S1709S 0.29 TCGA-49-AARE-01 18 29038563 29038563 G T DSG3 Silent p.L124L 0.34 TCGA-49-AARE-01 18 29039857 29039857 C A DSG3 Missense_Mutation p.H189Q 0.23 deleterious(0.01) probably_damaging(0.984) TCGA-49-AARE-01 18 29101061 29101061 G T DSG2 Splice_Site p.X127_splice 0.12 TCGA-49-AARE-01 18 3067355 3067355 C A MYOM1 Nonsense_Mutation p.E1655* 0.12 TCGA-49-AARE-01 18 33694315 33694315 C T SLC39A6 Missense_Mutation p.E530K 0.27 tolerated(0.13) possibly_damaging(0.486) TCGA-49-AARE-01 18 33780062 33780062 C T MOCOS Missense_Mutation p.A239V 0.12 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 18 34850733 34850733 G T CELF4 Missense_Mutation p.P366Q 0.35 tolerated(0.09) possibly_damaging(0.905) TCGA-49-AARE-01 18 42530412 42530412 G T SETBP1 Missense_Mutation p.R369S 0.31 deleterious_low_confidence(0.03) benign(0.124) TCGA-49-AARE-01 18 43311143 43311143 G A SLC14A1 Silent p.L161L 0.17 TCGA-49-AARE-01 18 43535292 43535292 A T EPG5 Missense_Mutation p.Y26N 0.35 tolerated_low_confidence(0.31) benign(0.037) TCGA-49-AARE-01 18 43535293 43535293 C A EPG5 Missense_Mutation p.K25N 0.31 tolerated_low_confidence(0.06) probably_damaging(0.978) TCGA-49-AARE-01 18 45566819 45566819 C A ZBTB7C Silent p.G220G 0.40 TCGA-49-AARE-01 18 47810436 47810436 T A CXXC1 Missense_Mutation p.Q418L 0.28 deleterious(0) probably_damaging(0.954) TCGA-49-AARE-01 18 5415903 5415903 C G EPB41L3 Missense_Mutation p.A661P 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-49-AARE-01 18 5445230 5445230 C A EPB41L3 Missense_Mutation p.G132V 0.12 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 18 55399131 55399131 C A ATP8B1 Intron 0.28 TCGA-49-AARE-01 18 57103335 57103335 C A CCBE1 Silent p.L342L 0.24 TCGA-49-AARE-01 18 59212374 59212375 - A CDH20 Frame_Shift_Ins p.D550Rfs*2 0.26 TCGA-49-AARE-01 18 63491977 63491977 G T CDH7 Missense_Mutation p.M297I 0.32 tolerated(0.24) benign(0.013) TCGA-49-AARE-01 18 65180610 65180610 G T DSEL Missense_Mutation p.F422L 0.26 deleterious(0) probably_damaging(0.997) TCGA-49-AARE-01 18 67794902 67794902 C G RTTN Missense_Mutation p.Q1073H 0.30 deleterious(0) probably_damaging(0.91) TCGA-49-AARE-01 18 697253 697253 C G ENOSF1 Missense_Mutation p.G120A 0.17 deleterious(0.03) benign(0.023) TCGA-49-AARE-01 18 756613 756613 C A YES1 Missense_Mutation p.G72V 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-49-AARE-01 19 10610247 10610247 C A KEAP1 Missense_Mutation p.V155F 0.57 deleterious(0.01) probably_damaging(0.993) TCGA-49-AARE-01 19 11130266 11130266 G A SMARCA4 Splice_Site p.X836_splice 0.58 TCGA-49-AARE-01 19 12903655 12903655 C T JUNB 3'UTR 0.24 TCGA-49-AARE-01 19 13080503 13080503 T A DAND5 Missense_Mutation p.L10Q 0.43 deleterious(0) unknown(0) TCGA-49-AARE-01 19 13080504 13080504 G T DAND5 Silent p.L10L 0.43 TCGA-49-AARE-01 19 13941627 13941627 G A ZSWIM4 Silent p.P911P 0.15 TCGA-49-AARE-01 19 14772792 14772792 T A EMR3 Missense_Mutation p.N113I 0.36 tolerated(0.1) possibly_damaging(0.462) TCGA-49-AARE-01 19 14772794 14772794 G T EMR3 Silent p.S112S 0.35 TCGA-49-AARE-01 19 14952098 14952098 C T OR7A10 Missense_Mutation p.V198M 0.12 tolerated_low_confidence(0.08) benign(0.113) TCGA-49-AARE-01 19 15990413 15990413 C A CYP4F2 Splice_Site p.X438_splice 0.27 TCGA-49-AARE-01 19 16617534 16617534 G A C19orf44 Silent p.S366S 0.16 TCGA-49-AARE-01 19 16689187 16689187 A G CTC-429P9.4 Missense_Mutation p.L50P 0.16 deleterious_low_confidence(0) unknown(0) TCGA-49-AARE-01 19 17322736 17322736 G A MYO9B 3'UTR 0.27 TCGA-49-AARE-01 19 17373752 17373752 G T USHBP1 Missense_Mutation p.A84D 0.09 deleterious(0.02) benign(0.387) TCGA-49-AARE-01 19 17487799 17487799 T A PLVAP Missense_Mutation p.Q100L 0.40 deleterious(0.01) benign(0.29) TCGA-49-AARE-01 19 17918752 17918752 G T B3GNT3 Missense_Mutation p.A46S 0.15 tolerated(0.56) benign(0.039) TCGA-49-AARE-01 19 19656122 19656122 C T CILP2 Missense_Mutation p.T923I 0.39 deleterious(0.05) benign(0.213) TCGA-49-AARE-01 19 20003417 20003417 G T ZNF253 Missense_Mutation p.C454F 0.08 deleterious(0.01) possibly_damaging(0.897) TCGA-49-AARE-01 19 2039705 2039705 C G MKNK2 Missense_Mutation p.Q435H 0.43 tolerated(0.08) benign(0.002) TCGA-49-AARE-01 19 21239553 21239553 A G ZNF430 Missense_Mutation p.T147A 0.24 deleterious(0) benign(0.019) TCGA-49-AARE-01 19 22155999 22155999 C A ZNF208 Nonsense_Mutation p.E613* 0.15 TCGA-49-AARE-01 19 22156635 22156635 C A ZNF208 Nonsense_Mutation p.E401* 0.36 TCGA-49-AARE-01 19 22363381 22363381 G T ZNF676 Missense_Mutation p.L380I 0.33 deleterious(0.02) possibly_damaging(0.901) TCGA-49-AARE-01 19 22363491 22363491 C A ZNF676 Missense_Mutation p.G343V 0.24 deleterious(0) probably_damaging(0.98) TCGA-49-AARE-01 19 22375820 22375820 G T ZNF676 Missense_Mutation p.P43Q 0.23 deleterious(0.01) probably_damaging(0.987) TCGA-49-AARE-01 19 22847513 22847513 C A ZNF492 Missense_Mutation p.Q348K 0.43 tolerated(0.41) benign(0.006) TCGA-49-AARE-01 19 22941488 22941488 C A ZNF99 Missense_Mutation p.W408L 0.16 tolerated(0.64) probably_damaging(0.918) TCGA-49-AARE-01 19 23159095 23159095 G T ZNF728 Silent p.A348A 0.41 TCGA-49-AARE-01 19 30935718 30935718 G T ZNF536 Missense_Mutation p.G417C 0.37 deleterious(0.01) possibly_damaging(0.703) TCGA-49-AARE-01 19 313617 313617 A C MIER2 Missense_Mutation p.W228G 0.43 deleterious(0) probably_damaging(0.995) TCGA-49-AARE-01 19 36050971 36050971 G T ATP4A Silent p.T264T 0.73 TCGA-49-AARE-01 19 3623819 3623819 C A CACTIN Missense_Mutation p.R170L 0.41 deleterious(0) probably_damaging(0.987) TCGA-49-AARE-01 19 36303078 36303078 G C PRODH2 Silent p.L232L 0.36 TCGA-49-AARE-01 19 37618042 37618042 G C ZNF420 Missense_Mutation p.R50T 0.27 tolerated(0.54) benign(0.227) TCGA-49-AARE-01 19 37853127 37853127 G T HKR1 Missense_Mutation p.A144S 0.71 deleterious(0.02) benign(0.053) TCGA-49-AARE-01 19 38986905 38986905 C T RYR1 Missense_Mutation p.A2200V 0.66 benign(0.005) TCGA-49-AARE-01 19 41822413 41822413 G T CCDC97 Silent p.G57G 0.62 TCGA-49-AARE-01 19 42222257 42222257 C T CEACAM5 Missense_Mutation p.A483V 0.07 tolerated(0.31) possibly_damaging(0.467) TCGA-49-AARE-01 19 42351581 42351581 G A DMRTC2 Missense_Mutation p.E29K 0.07 deleterious(0.04) probably_damaging(0.993) TCGA-49-AARE-01 19 42814072 42814072 G T PRR19 Missense_Mutation p.R112S 0.32 tolerated(0.66) benign(0.007) TCGA-49-AARE-01 19 43433696 43433696 A C PSG7 Missense_Mutation p.Y203D 0.10 tolerated(0.11) benign(0.062) TCGA-49-AARE-01 19 44237543 44237543 A G SMG9 Silent p.S424S 0.33 TCGA-49-AARE-01 19 44591342 44591342 G T ZNF284 Missense_Mutation p.D571Y 0.50 deleterious(0) possibly_damaging(0.543) TCGA-49-AARE-01 19 48525447 48525447 G A ELSPBP1 Missense_Mutation p.G179S 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-49-AARE-01 19 48624412 48624412 C A LIG1 Intron 0.16 TCGA-49-AARE-01 19 48801336 48801336 C A CCDC114 Missense_Mutation p.D438Y 0.52 deleterious(0) possibly_damaging(0.886) TCGA-49-AARE-01 19 49547387 49547387 C G CGB5 5'UTR 0.53 TCGA-49-AARE-01 19 50510941 50510941 T A VRK3 Silent p.R144R 0.40 TCGA-49-AARE-01 19 51017910 51017910 G T ASPDH 5'Flank 0.53 TCGA-49-AARE-01 19 51226755 51226755 G A CLEC11A 5'UTR 0.51 TCGA-49-AARE-01 19 51649136 51649136 C A SIGLEC7 Nonsense_Mutation p.S262* 0.47 TCGA-49-AARE-01 19 51875792 51875792 G T NKG7 5'UTR 0.65 TCGA-49-AARE-01 19 52090586 52090586 C T ZNF175 Silent p.P334P 0.28 TCGA-49-AARE-01 19 52327679 52327680 - A FPR3 Frame_Shift_Ins p.I228Nfs*8 0.32 TCGA-49-AARE-01 19 53117736 53117736 G C ZNF83 Missense_Mutation p.L28V 0.48 deleterious(0.05) probably_damaging(0.931) TCGA-49-AARE-01 19 53740430 53740430 C T ZNF677 Missense_Mutation p.C517Y 0.50 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 19 53945092 53945092 G T TPM3P9 RNA 0.67 TCGA-49-AARE-01 19 54744964 54744964 G T LILRA6 Missense_Mutation p.P233H 0.12 tolerated(0.12) probably_damaging(0.96) TCGA-49-AARE-01 19 55668981 55668981 C T TNNI3 5'UTR 0.59 TCGA-49-AARE-01 19 55716821 55716821 C G PTPRH Silent p.G164G 0.35 TCGA-49-AARE-01 19 55742245 55742245 T C PPP6R1 Missense_Mutation p.R823G 0.17 tolerated_low_confidence(0.05) benign(0.002) TCGA-49-AARE-01 19 56206532 56206532 C T EPN1 Missense_Mutation p.P600L 0.57 deleterious(0.01) probably_damaging(0.969) TCGA-49-AARE-01 19 56243700 56243700 T A NLRP9 Silent p.S499S 0.40 TCGA-49-AARE-01 19 56515362 56515362 G C NLRP5 Missense_Mutation p.E115Q 0.38 tolerated(0.07) probably_damaging(0.999) TCGA-49-AARE-01 19 56904853 56904853 C G ZNF582 5'UTR 0.57 TCGA-49-AARE-01 19 57133357 57133357 G A ZNF71 Silent p.R234R 0.19 TCGA-49-AARE-01 19 57326227 57326227 C A PEG3 Missense_Mutation p.G1195W 0.46 deleterious(0.02) probably_damaging(0.913) TCGA-49-AARE-01 19 57327130 57327130 A T PEG3 Missense_Mutation p.S894T 0.17 tolerated(0.13) benign(0.099) TCGA-49-AARE-01 19 57654030 57654030 C A ZIM3 5'UTR 0.41 TCGA-49-AARE-01 19 58004494 58004494 C A ZNF419 Missense_Mutation p.S191Y 0.17 deleterious(0) benign(0.276) TCGA-49-AARE-01 19 58572990 58572990 G T ZNF135 Nonsense_Mutation p.E38* 0.10 TCGA-49-AARE-01 19 58601308 58601308 C A ZSCAN18 Silent p.V165V 0.57 TCGA-49-AARE-01 19 58601499 58601499 C G ZSCAN18 Missense_Mutation p.E102Q 0.37 deleterious(0) probably_damaging(0.998) TCGA-49-AARE-01 19 629886 629886 C T POLRMT Missense_Mutation p.R159H 0.23 tolerated(0.15) benign(0.002) TCGA-49-AARE-01 19 6430165 6430165 G C SLC25A41 Missense_Mutation p.S124C 0.17 deleterious(0.02) probably_damaging(0.933) TCGA-49-AARE-01 19 6466548 6466548 G C CRB3 Silent p.L76L 0.39 TCGA-49-AARE-01 19 6479021 6479021 C A DENND1C Missense_Mutation p.D75Y 0.33 deleterious(0) probably_damaging(0.995) TCGA-49-AARE-01 19 7605515 7605515 G T PNPLA6 Splice_Site p.X248_splice 0.24 TCGA-49-AARE-01 19 9005694 9005694 T C MUC16 Missense_Mutation p.I13238V 0.33 possibly_damaging(0.822) TCGA-49-AARE-01 19 9011324 9011324 T C MUC16 Missense_Mutation p.N12970S 0.17 probably_damaging(0.951) TCGA-49-AARE-01 19 9074364 9074364 G C MUC16 Missense_Mutation p.T4361S 0.39 unknown(0) TCGA-49-AARE-01 19 9077105 9077105 T C MUC16 Silent p.T3447T 0.44 TCGA-49-AARE-01 19 9090884 9090884 A G MUC16 Missense_Mutation p.S311P 0.52 unknown(0) TCGA-49-AARE-01 19 9213260 9213260 C A OR7G2 Missense_Mutation p.Q241H 0.35 tolerated(0.32) benign(0.132) TCGA-49-AARE-01 19 9226361 9226361 G C OR7G1 Missense_Mutation p.P27A 0.35 deleterious(0) benign(0.009) TCGA-49-AARE-01 1 103463882 103463882 C G COL11A1 Missense_Mutation p.G727A 0.22 unknown(0) TCGA-49-AARE-01 1 103471833 103471833 T G COL11A1 Silent p.G574G 0.21 TCGA-49-AARE-01 1 11097819 11097819 A T MASP2 Silent p.P313P 0.41 TCGA-49-AARE-01 1 111969136 111969136 C A OVGP1 Missense_Mutation p.M61I 0.24 tolerated(0.28) benign(0.297) TCGA-49-AARE-01 1 114354441 114354441 G - RSBN1 Frame_Shift_Del p.G199Afs*30 0.27 TCGA-49-AARE-01 1 116675887 116675887 G T MAB21L3 Silent p.R330R 0.45 TCGA-49-AARE-01 1 119427755 119427755 C G TBX15 Missense_Mutation p.G364A 0.24 tolerated(0.63) benign(0.007) TCGA-49-AARE-01 1 120311448 120311448 G T HMGCS2 Missense_Mutation p.P7Q 0.60 tolerated_low_confidence(0.16) benign(0.011) TCGA-49-AARE-01 1 149902618 149902618 G A MTMR11 Intron 0.27 TCGA-49-AARE-01 1 149916443 149916443 C G OTUD7B Silent p.L615L 0.21 TCGA-49-AARE-01 1 150300862 150300862 A T PRPF3 Missense_Mutation p.E120D 0.23 tolerated(0.45) benign(0.002) TCGA-49-AARE-01 1 150550823 150550837 AAGTGTTTAGCCACA - MCL1 In_Frame_Del p.F273_H277del 0.10 TCGA-49-AARE-01 1 151162602 151162602 C A VPS72 5'UTR 0.11 TCGA-49-AARE-01 1 151261719 151261719 C T ZNF687 Missense_Mutation p.H815Y 0.18 deleterious(0) probably_damaging(0.995) TCGA-49-AARE-01 1 152188196 152188196 C A HRNR Missense_Mutation p.G1970V 0.02 unknown(0) TCGA-49-AARE-01 1 152191078 152191078 A G HRNR Silent p.P1009P 0.16 TCGA-49-AARE-01 1 152324713 152324713 T A FLG2 Missense_Mutation p.Q1850L 0.11 probably_damaging(0.995) TCGA-49-AARE-01 1 152331291 152331291 C A FLG2 Nonsense_Mutation p.E24* 0.39 TCGA-49-AARE-01 1 152944420 152944420 C A SPRR4 Silent p.A18A 0.40 TCGA-49-AARE-01 1 153029073 153029073 G T SPRR2A Missense_Mutation p.P47T 0.31 deleterious_low_confidence(0) unknown(0) TCGA-49-AARE-01 1 153279547 153279547 C A PGLYRP3 Silent p.A84A 0.29 TCGA-49-AARE-01 1 153660698 153660698 G T NPR1 Splice_Site p.X806_splice 0.29 TCGA-49-AARE-01 1 154293604 154293604 C A AQP10 5'UTR 0.41 TCGA-49-AARE-01 1 154309916 154309916 G T ATP8B2 Silent p.L343L 0.18 TCGA-49-AARE-01 1 154996959 154996959 C A DCST2 Silent p.V577V 0.16 TCGA-49-AARE-01 1 155178721 155178721 C A MTX1 Silent p.R42R 0.29 TCGA-49-AARE-01 1 155264978 155264978 A T PKLR Missense_Mutation p.V208D 0.24 tolerated(0.13) benign(0.103) TCGA-49-AARE-01 1 155287639 155287639 G T FDPS Intron 0.30 TCGA-49-AARE-01 1 155785655 155785655 C T GON4L Missense_Mutation p.D368N 0.14 deleterious(0.02) possibly_damaging(0.728) TCGA-49-AARE-01 1 156444977 156444981 GGGGT AGGGGG MEF2D Frame_Shift_Ins p.T309Pfs*43 0.23 TCGA-49-AARE-01 1 156500014 156500014 G A IQGAP3 Silent p.S1429S 0.24 TCGA-49-AARE-01 1 156621424 156621424 G T BCAN Nonsense_Mutation p.G414* 0.30 TCGA-49-AARE-01 1 156849153 156849153 G T NTRK1 Missense_Mutation p.R682L 0.28 deleterious(0) possibly_damaging(0.851) TCGA-49-AARE-01 1 157557183 157557183 G A FCRL4 Missense_Mutation p.P244S 0.13 tolerated(0.47) benign(0.053) TCGA-49-AARE-01 1 158224457 158224457 G A CD1A 5'UTR 0.30 TCGA-49-AARE-01 1 158517126 158517126 T A OR6Y1 Missense_Mutation p.Y257F 0.34 tolerated(0.21) probably_damaging(0.999) TCGA-49-AARE-01 1 158597469 158597469 G A SPTA1 Silent p.V1870V 0.30 TCGA-49-AARE-01 1 158639315 158639315 G - SPTA1 Frame_Shift_Del p.T573Lfs*6 0.21 TCGA-49-AARE-01 1 158670133 158670133 G C OR6K2 Missense_Mutation p.H104D 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-49-AARE-01 1 158815774 158815774 G T MNDA Missense_Mutation p.G323V 0.26 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 1 159175507 159175507 G T DARC Missense_Mutation p.C95F 0.25 tolerated(0.08) possibly_damaging(0.902) TCGA-49-AARE-01 1 159409699 159409699 G T OR10J1 Missense_Mutation p.A51S 0.20 tolerated(0.91) benign(0.031) TCGA-49-AARE-01 1 160097476 160097476 G T ATP1A2 Missense_Mutation p.G295W 0.22 tolerated(0.07) probably_damaging(0.963) TCGA-49-AARE-01 1 160136491 160136491 G T ATP1A4 Missense_Mutation p.E407D 0.31 tolerated(0.11) benign(0.028) TCGA-49-AARE-01 1 160168502 160168502 C A CASQ1 Missense_Mutation p.F288L 0.17 deleterious(0.04) probably_damaging(0.939) TCGA-49-AARE-01 1 161199640 161199640 G C NR1I3 Missense_Mutation p.H341D 0.34 tolerated(0.09) benign(0.253) TCGA-49-AARE-01 1 161518211 161518211 C A FCGR3A Missense_Mutation p.G143C 0.08 deleterious(0.01) probably_damaging(0.991) TCGA-49-AARE-01 1 161599568 161599568 C A FCGR3B Missense_Mutation p.G143C 0.48 deleterious(0.01) probably_damaging(0.978) TCGA-49-AARE-01 1 161647128 161647128 T A FCGR2B Silent p.T276T 0.10 TCGA-49-AARE-01 1 161654902 161654902 G A RPL31P11 RNA 0.09 TCGA-49-AARE-01 1 16256057 16256057 C G SPEN Missense_Mutation p.P1108A 0.29 benign(0.002) TCGA-49-AARE-01 1 163038681 163038681 C A RGS4 5'UTR 0.30 TCGA-49-AARE-01 1 163131744 163131744 G C RGS5 Missense_Mutation p.Q60E 0.16 tolerated(0.18) benign(0.011) TCGA-49-AARE-01 1 165860546 165860546 G T UCK2 Missense_Mutation p.V115F 0.21 tolerated(0.15) benign(0.045) TCGA-49-AARE-01 1 167038371 167038371 C A GPA33 Missense_Mutation p.R68M 0.21 tolerated(0.09) benign(0.091) TCGA-49-AARE-01 1 167096359 167096359 C T DUSP27 Missense_Mutation p.S664F 0.29 deleterious(0.01) possibly_damaging(0.472) TCGA-49-AARE-01 1 169391225 169391225 C A CCDC181 Missense_Mutation p.R148S 0.26 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 1 169576333 169576333 C A SELP Missense_Mutation p.R458L 0.33 deleterious(0.01) benign(0.068) TCGA-49-AARE-01 1 171162636 171162636 G A FMO2 Missense_Mutation p.D99N 0.21 tolerated(0.45) benign(0.052) TCGA-49-AARE-01 1 171252349 171252349 C A FMO1 Missense_Mutation p.P417H 0.22 tolerated(0.26) benign(0.01) TCGA-49-AARE-01 1 174418306 174418306 A T GPR52 Missense_Mutation p.R353W 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.598) TCGA-49-AARE-01 1 175092647 175092647 C G TNN Missense_Mutation p.S921C 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-49-AARE-01 1 175092678 175092678 G T TNN Silent p.V931V 0.28 TCGA-49-AARE-01 1 175096118 175096118 C A TNN Missense_Mutation p.P981Q 0.24 deleterious(0.04) possibly_damaging(0.673) TCGA-49-AARE-01 1 175306678 175306678 C G TNR Missense_Mutation p.G1174R 0.29 deleterious(0) probably_damaging(0.926) TCGA-49-AARE-01 1 175372527 175372527 C A TNR Missense_Mutation p.R242L 0.33 deleterious(0) benign(0.166) TCGA-49-AARE-01 1 177001777 177001777 G T ASTN1 Missense_Mutation p.S227Y 0.25 deleterious_low_confidence(0) possibly_damaging(0.819) TCGA-49-AARE-01 1 177245406 177245406 G T BRINP2 Missense_Mutation p.S283I 0.31 deleterious(0) benign(0.054) TCGA-49-AARE-01 1 177247742 177247742 C A BRINP2 Missense_Mutation p.F352L 0.26 tolerated(0.07) probably_damaging(0.97) TCGA-49-AARE-01 1 179783273 179783273 C A FAM163A Silent p.G151G 0.32 TCGA-49-AARE-01 1 181620521 181620521 C A CACNA1E Silent p.P333P 0.08 TCGA-49-AARE-01 1 181686274 181686274 G T CACNA1E Missense_Mutation p.G454V 0.25 deleterious(0.04) probably_damaging(0.953) TCGA-49-AARE-01 1 182026586 182026586 G T ZNF648 Missense_Mutation p.S187Y 0.21 deleterious(0) benign(0.002) TCGA-49-AARE-01 1 182847308 182847308 G A DHX9 Missense_Mutation p.R784K 0.39 tolerated(1) benign(0.005) TCGA-49-AARE-01 1 183486929 183486929 G C SMG7 Missense_Mutation p.E96Q 0.06 deleterious(0.03) possibly_damaging(0.896) TCGA-49-AARE-01 1 185153930 185153930 T C SWT1 Silent p.R432R 0.36 TCGA-49-AARE-01 1 186008900 186008900 G T HMCN1 Silent p.V2023V 0.21 TCGA-49-AARE-01 1 186083142 186083142 C A HMCN1 Missense_Mutation p.S3721R 0.29 probably_damaging(0.997) TCGA-49-AARE-01 1 186276061 186276061 C A PRG4 Missense_Mutation p.P404T 0.22 unknown(0) TCGA-49-AARE-01 1 192627344 192627344 C A RGS13 Silent p.V47V 0.24 TCGA-49-AARE-01 1 193094313 193094313 A G CDC73 Missense_Mutation p.H68R 0.20 tolerated(0.41) benign(0.109) TCGA-49-AARE-01 1 196342315 196342315 G C KCNT2 Missense_Mutation p.A453G 0.23 tolerated(1) possibly_damaging(0.635) TCGA-49-AARE-01 1 197168564 197168564 C A ZBTB41 Missense_Mutation p.G347V 0.31 tolerated(0.07) possibly_damaging(0.46) TCGA-49-AARE-01 1 197326045 197326045 C A CRB1 Missense_Mutation p.S358Y 0.17 deleterious(0) probably_damaging(0.992) TCGA-49-AARE-01 1 198700804 198700804 T A PTPRC Silent p.T641T 0.46 TCGA-49-AARE-01 1 198700805 198700805 T A PTPRC Missense_Mutation p.Y642N 0.46 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 1 20009934 20009934 T G TMCO4 Missense_Mutation p.S502R 0.27 tolerated(0.05) benign(0.157) TCGA-49-AARE-01 1 200567453 200567453 T C KIF14 Missense_Mutation p.K821E 0.32 deleterious(0) probably_damaging(0.994) TCGA-49-AARE-01 1 200618351 200618351 T C DDX59 Missense_Mutation p.K440E 0.33 tolerated(0.16) benign(0.001) TCGA-49-AARE-01 1 202704588 202704588 G A KDM5B Missense_Mutation p.A1131V 0.21 tolerated(0.09) benign(0.024) TCGA-49-AARE-01 1 203143574 203143574 G A MYBPH Silent p.H164H 0.16 TCGA-49-AARE-01 1 203821498 203821498 C A ZC3H11A Missense_Mutation p.L802I 0.12 deleterious(0) probably_damaging(0.971) TCGA-49-AARE-01 1 204082057 204082057 G T SOX13 Missense_Mutation p.S5I 0.44 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-49-AARE-01 1 205632712 205632712 C A SLC45A3 Silent p.P69P 0.18 TCGA-49-AARE-01 1 206972336 206972336 G C IL19 Missense_Mutation p.G33R 0.27 tolerated_low_confidence(0.17) benign(0.014) TCGA-49-AARE-01 1 206972337 206972337 G T IL19 Missense_Mutation p.G33V 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.697) TCGA-49-AARE-01 1 207533002 207533002 C T CD55 Silent p.F437F 0.46 TCGA-49-AARE-01 1 207790072 207790072 C T CR1 Missense_Mutation p.R2272C 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-49-AARE-01 1 209789886 209789886 C A LAMB3 Silent p.R1104R 0.24 TCGA-49-AARE-01 1 209800209 209800209 C A LAMB3 Intron 0.26 TCGA-49-AARE-01 1 211280706 211280706 C A KCNH1 Silent p.V31V 0.10 TCGA-49-AARE-01 1 214178578 214178578 G T PROX1 Missense_Mutation p.S599I 0.11 deleterious(0) probably_damaging(0.998) TCGA-49-AARE-01 1 214706197 214706197 C A PTPN14 Intron 0.38 TCGA-49-AARE-01 1 215940132 215940132 T C USH2A Splice_Site p.X3647_splice 0.34 TCGA-49-AARE-01 1 216371887 216371887 C A USH2A Missense_Mutation p.R1284I 0.28 benign(0.222) TCGA-49-AARE-01 1 216850504 216850504 A G ESRRG Missense_Mutation p.L134S 0.11 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 1 222712067 222712067 G T HHIPL2 Silent p.V500V 0.24 TCGA-49-AARE-01 1 223283984 223283984 T C TLR5 Missense_Mutation p.Q797R 0.33 deleterious(0.04) benign(0.119) TCGA-49-AARE-01 1 223991951 223991951 G A TP53BP2 Nonsense_Mutation p.Q192* 0.13 TCGA-49-AARE-01 1 226827276 226827276 T C ITPKB Silent p.K845K 0.27 TCGA-49-AARE-01 1 227169809 227169809 G C ADCK3 Missense_Mutation p.R271P 0.25 deleterious(0) probably_damaging(0.993) TCGA-49-AARE-01 1 228003891 228003891 C A PRSS38 Missense_Mutation p.H83Q 0.27 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 1 228005148 228005148 T A PRSS38 Missense_Mutation p.W184R 0.25 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 1 228285622 228285622 A G ARF1 Missense_Mutation p.N152D 0.35 tolerated_low_confidence(0.14) benign(0.005) TCGA-49-AARE-01 1 228476415 228476415 G T OBSCN Missense_Mutation p.A3818S 0.12 probably_damaging(0.918) TCGA-49-AARE-01 1 228476532 228476532 G - OBSCN Frame_Shift_Del p.E3858Sfs*17 0.09 TCGA-49-AARE-01 1 228486415 228486415 A T OBSCN Missense_Mutation p.R4403W 0.32 probably_damaging(0.983) TCGA-49-AARE-01 1 228588823 228588823 C A TRIM11 Nonsense_Mutation p.E193* 0.29 TCGA-49-AARE-01 1 229567330 229567330 C T ACTA1 Silent p.S350S 0.23 TCGA-49-AARE-01 1 231411222 231411222 G T GNPAT Nonsense_Mutation p.G639* 0.30 TCGA-49-AARE-01 1 231954153 231954153 T C DISC1 Missense_Mutation p.L624P 0.21 deleterious(0) probably_damaging(0.994) TCGA-49-AARE-01 1 235963687 235963687 C A LYST Splice_Site p.X1314_splice 0.20 TCGA-49-AARE-01 1 236195848 236195848 T C NID1 Missense_Mutation p.M464V 0.23 tolerated(0.19) benign(0.077) TCGA-49-AARE-01 1 236899000 236899000 G C ACTN2 Missense_Mutation p.A255P 0.24 tolerated(0.08) probably_damaging(0.992) TCGA-49-AARE-01 1 236958983 236958983 G A MTR 5'UTR 0.29 TCGA-49-AARE-01 1 237001895 237001895 G T MTR Missense_Mutation p.G504V 0.29 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 1 237711890 237711890 G - RYR2 Frame_Shift_Del 0.16 TCGA-49-AARE-01 1 237774140 237774140 G T RYR2 Missense_Mutation p.V1588L 0.40 benign(0.028) TCGA-49-AARE-01 1 237789020 237789020 C A RYR2 Missense_Mutation p.R2028S 0.27 benign(0.069) TCGA-49-AARE-01 1 237791252 237791252 G A RYR2 Silent p.K2104K 0.42 TCGA-49-AARE-01 1 237863655 237863655 C A RYR2 Missense_Mutation p.N3085K 0.25 benign(0.007) TCGA-49-AARE-01 1 237863656 237863656 C A RYR2 Missense_Mutation p.Q3086K 0.25 possibly_damaging(0.655) TCGA-49-AARE-01 1 237890406 237890406 C A RYR2 Missense_Mutation p.S3582Y 0.28 possibly_damaging(0.781) TCGA-49-AARE-01 1 238090458 238090458 C G RP11-193H5.1 RNA 0.24 TCGA-49-AARE-01 1 240071031 240071031 A T CHRM3 Nonsense_Mutation p.K94* 0.18 TCGA-49-AARE-01 1 241959665 241959665 G T WDR64 Missense_Mutation p.R1052L 0.22 tolerated(0.08) benign(0.006) TCGA-49-AARE-01 1 243328471 243328471 G C CEP170 Missense_Mutation p.P931A 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-49-AARE-01 1 243336141 243336141 C A CEP170 Missense_Mutation p.G525V 0.50 deleterious(0) probably_damaging(0.984) TCGA-49-AARE-01 1 247492824 247492824 C A ZNF496 Missense_Mutation p.R19S 0.29 deleterious_low_confidence(0.03) possibly_damaging(0.759) TCGA-49-AARE-01 1 247582032 247582032 T A NLRP3 5'UTR 0.13 TCGA-49-AARE-01 1 247582196 247582196 C A NLRP3 Missense_Mutation p.P34T 0.26 tolerated(0.34) possibly_damaging(0.546) TCGA-49-AARE-01 1 247599363 247599363 G T NLRP3 Nonsense_Mutation p.E864* 0.33 TCGA-49-AARE-01 1 247607420 247607420 C T NLRP3 Missense_Mutation p.P939L 0.28 deleterious(0) possibly_damaging(0.721) TCGA-49-AARE-01 1 247712522 247712522 G T GCSAML Missense_Mutation p.S10I 0.26 tolerated(0.15) benign(0.066) TCGA-49-AARE-01 1 247751828 247751828 C A OR2G2 Missense_Mutation p.P56H 0.25 deleterious(0) probably_damaging(0.928) TCGA-49-AARE-01 1 247875939 247875939 C A OR6F1 Missense_Mutation p.S40I 0.26 tolerated(0.79) benign(0.001) TCGA-49-AARE-01 1 248128953 248128953 T A OR2AK2 Missense_Mutation p.I107N 0.28 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 1 248129278 248129278 C A OR2AK2 Silent p.L215L 0.33 TCGA-49-AARE-01 1 248129279 248129279 C A OR2AK2 Missense_Mutation p.L216M 0.31 tolerated(0.07) benign(0.34) TCGA-49-AARE-01 1 248224571 248224571 C A OR2L3 Silent p.G196G 0.21 TCGA-49-AARE-01 1 248308884 248308884 T A OR2M5 Silent p.T145T 0.28 TCGA-49-AARE-01 1 248436362 248436362 G C OR2T33 Missense_Mutation p.A252G 0.23 tolerated(0.07) benign(0.232) TCGA-49-AARE-01 1 248458395 248458395 C A OR2T12 Silent p.L162L 0.38 TCGA-49-AARE-01 1 248685005 248685005 C A OR2G6 Missense_Mutation p.Q20K 0.15 tolerated(0.15) benign(0.003) TCGA-49-AARE-01 1 26509860 26509860 G C CNKSR1 Missense_Mutation p.Q236H 0.36 tolerated(0.09) benign(0.086) TCGA-49-AARE-01 1 27238310 27238310 C T NR0B2 3'UTR 0.34 TCGA-49-AARE-01 1 28209084 28209084 C T THEMIS2 Missense_Mutation p.P417S 0.34 tolerated(0.71) benign(0.08) TCGA-49-AARE-01 1 32263808 32263808 C G SPOCD1 Missense_Mutation p.R715S 0.39 deleterious(0.02) probably_damaging(0.95) TCGA-49-AARE-01 1 32504197 32504197 A T KHDRBS1 Missense_Mutation p.E384D 0.32 tolerated(0.65) possibly_damaging(0.585) TCGA-49-AARE-01 1 32542833 32542833 C G TMEM39B Silent p.L168L 0.14 TCGA-49-AARE-01 1 32674765 32674765 C T DCDC2B Missense_Mutation p.S24F 0.29 deleterious(0) benign(0.195) TCGA-49-AARE-01 1 33241576 33241576 G A YARS 3'UTR 0.37 TCGA-49-AARE-01 1 42041330 42041330 C A HIVEP3 Missense_Mutation p.G1698C 0.28 possibly_damaging(0.866) TCGA-49-AARE-01 1 45091997 45091997 G T RNF220 Missense_Mutation p.R278M 0.36 deleterious(0) probably_damaging(0.996) TCGA-49-AARE-01 1 54060472 54060472 G T GLIS1 Missense_Mutation p.A35E 0.41 deleterious_low_confidence(0) possibly_damaging(0.456) TCGA-49-AARE-01 1 54610151 54610151 C A CDCP2 Missense_Mutation p.G139C 0.39 deleterious(0.02) probably_damaging(0.95) TCGA-49-AARE-01 1 55074825 55074825 C T ACOT11 Intron 0.42 TCGA-49-AARE-01 1 55088957 55088957 G T FAM151A Silent p.R38R 0.20 TCGA-49-AARE-01 1 55188412 55188412 G T TTC4 Silent p.L178L 0.42 TCGA-49-AARE-01 1 70501852 70501852 C A LRRC7 Missense_Mutation p.P644T 0.33 deleterious(0) benign(0.424) TCGA-49-AARE-01 1 70501853 70501853 C A LRRC7 Missense_Mutation p.P644H 0.31 deleterious(0) possibly_damaging(0.868) TCGA-49-AARE-01 1 70587519 70587519 G T LRRC7 Missense_Mutation p.K1521N 0.43 deleterious(0) possibly_damaging(0.721) TCGA-49-AARE-01 1 71318415 71318415 G A PTGER3 3'UTR 0.22 TCGA-49-AARE-01 1 75055255 75055255 G T C1orf173 Intron 0.22 TCGA-49-AARE-01 1 75622617 75622617 G T LHX8 Missense_Mutation p.V284F 0.17 deleterious(0.03) possibly_damaging(0.737) TCGA-49-AARE-01 1 75708584 75708584 G T SLC44A5 Missense_Mutation p.A153D 0.38 tolerated(0.29) benign(0.005) TCGA-49-AARE-01 1 76384589 76384589 G T ASB17 3'UTR 0.23 TCGA-49-AARE-01 1 76384781 76384781 T C ASB17 Silent p.T248T 0.52 TCGA-49-AARE-01 1 78186874 78186874 A T USP33 Missense_Mutation p.S589R 0.19 deleterious(0.02) benign(0.077) TCGA-49-AARE-01 1 79116162 79116162 A G IFI44 Silent p.L94L 0.55 TCGA-49-AARE-01 1 87100086 87100086 C G RP4-651E10.4 Intron 0.32 TCGA-49-AARE-01 1 87549910 87549910 G T HS2ST1 Nonsense_Mutation p.E133* 0.40 TCGA-49-AARE-01 1 91859792 91859792 C G HFM1 Missense_Mutation p.A118P 0.44 tolerated_low_confidence(0.15) benign(0.002) TCGA-49-AARE-01 1 9777118 9777118 C T PIK3CD Silent p.P294P 0.46 TCGA-49-AARE-01 20 10286868 10286868 C G SNAP25 3'UTR 0.41 TCGA-49-AARE-01 20 10438831 10438831 G T SLX4IP 5'UTR 0.22 TCGA-49-AARE-01 20 11899149 11899149 A C BTBD3 Missense_Mutation p.S76R 0.17 tolerated(0.13) benign(0) TCGA-49-AARE-01 20 13605846 13605846 G T TASP1 Silent p.R67R 0.12 TCGA-49-AARE-01 20 13695796 13695796 G C ESF1 Missense_Mutation p.R761G 0.17 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 20 1457834 1457834 A G SIRPB2 Intron 0.29 TCGA-49-AARE-01 20 18432497 18432497 C A DZANK1 Intron 0.15 TCGA-49-AARE-01 20 18477743 18477743 C A RBBP9 Missense_Mutation p.W23C 0.31 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 20 19654272 19654272 G A SLC24A3 Missense_Mutation p.M247I 0.28 deleterious(0.01) benign(0.411) TCGA-49-AARE-01 20 21687524 21687524 G T PAX1 Silent p.T245T 0.12 TCGA-49-AARE-01 20 2380345 2380345 T C TGM6 Missense_Mutation p.Y271H 0.31 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 20 25264764 25264764 T C PYGB Missense_Mutation p.F549L 0.33 tolerated(0.23) benign(0.004) TCGA-49-AARE-01 20 33875176 33875176 C G FAM83C Missense_Mutation p.G469A 0.30 deleterious_low_confidence(0) possibly_damaging(0.735) TCGA-49-AARE-01 20 34542191 34542191 G C SCAND1 Missense_Mutation p.P6A 0.25 deleterious_low_confidence(0.05) benign(0.003) TCGA-49-AARE-01 20 3678575 3678575 C T SIGLEC1 Silent p.K664K 0.26 TCGA-49-AARE-01 20 3682045 3682045 C A SIGLEC1 Missense_Mutation p.C491F 0.36 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 20 40102044 40102044 G A CHD6 Missense_Mutation p.A861V 0.27 deleterious(0) probably_damaging(0.978) TCGA-49-AARE-01 20 44670162 44670162 C A SLC12A5 Missense_Mutation p.A373D 0.32 deleterious(0.01) benign(0.07) TCGA-49-AARE-01 20 47262458 47262458 C A PREX1 Missense_Mutation p.C1148F 0.25 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 20 4770341 4770341 T A RASSF2 Silent p.T180T 0.26 TCGA-49-AARE-01 20 49620987 49620987 G T KCNG1 Missense_Mutation p.F377L 0.50 tolerated(0.47) possibly_damaging(0.793) TCGA-49-AARE-01 20 52198214 52198214 G C ZNF217 Missense_Mutation p.F384L 0.20 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 20 57273820 57273820 C T NPEPL1 Silent p.T196T 0.12 TCGA-49-AARE-01 20 57428462 57428462 G C GNAS Missense_Mutation p.E48Q 0.20 deleterious_low_confidence(0) unknown(0) TCGA-49-AARE-01 20 62595850 62595850 T A ZNF512B Silent p.T418T 0.15 TCGA-49-AARE-01 20 7990872 7990872 C - TMX4 Frame_Shift_Del p.K90Rfs*2 0.23 TCGA-49-AARE-01 21 15918600 15918600 C A SAMSN1 Intron 0.09 TCGA-49-AARE-01 21 19628892 19628892 C T CHODL Missense_Mutation p.S49F 0.24 tolerated(0.05) possibly_damaging(0.793) TCGA-49-AARE-01 21 26966250 26966250 T G MRPL39 Missense_Mutation p.E241A 0.17 tolerated(0.18) benign(0.396) TCGA-49-AARE-01 21 30353622 30353622 C A LTN1 Splice_Site p.X256_splice 0.18 TCGA-49-AARE-01 21 31802908 31802908 G T KRTAP13-4 Silent p.L105L 0.20 TCGA-49-AARE-01 21 31971031 31971031 C T KRTAP6-2 Missense_Mutation p.G55R 0.35 unknown(0) TCGA-49-AARE-01 21 31973449 31973449 G C KRTAP22-1 Missense_Mutation p.D4H 0.22 unknown(0) TCGA-49-AARE-01 21 38555135 38555135 G T TTC3 Missense_Mutation p.W1559C 0.21 deleterious(0) probably_damaging(0.996) TCGA-49-AARE-01 21 39087318 39087318 G T KCNJ6 Silent p.R48R 0.21 TCGA-49-AARE-01 21 43808631 43808631 C A TMPRSS3 Silent p.R109R 0.18 TCGA-49-AARE-01 21 46641982 46641982 A T ADARB1 Missense_Mutation p.H699L 0.32 tolerated(0.68) possibly_damaging(0.74) TCGA-49-AARE-01 21 47549198 47549198 G A COL6A2 Intron 0.17 TCGA-49-AARE-01 21 47557224 47557224 C A FTCD Missense_Mutation p.G490C 0.12 deleterious(0.02) probably_damaging(0.995) TCGA-49-AARE-01 22 17472789 17472789 C A GAB4 Missense_Mutation p.C151F 0.25 deleterious(0.03) probably_damaging(0.951) TCGA-49-AARE-01 22 17525892 17525892 T A CECR7 Splice_Site 0.15 TCGA-49-AARE-01 22 18209923 18209923 G T BCL2L13 Missense_Mutation p.D361Y 0.22 deleterious_low_confidence(0.02) benign(0.316) TCGA-49-AARE-01 22 18609647 18609647 A T TUBA8 Missense_Mutation p.Q301L 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-49-AARE-01 22 19184046 19184046 A G CLTCL1 Missense_Mutation p.M1332T 0.44 tolerated(0.18) possibly_damaging(0.578) TCGA-49-AARE-01 22 21157531 21157531 G A PI4KA Silent p.I513I 0.41 TCGA-49-AARE-01 22 21989373 21989373 G T CCDC116 Nonsense_Mutation p.E341* 0.41 TCGA-49-AARE-01 22 22664206 22664206 G T BMS1P20 RNA 0.08 TCGA-49-AARE-01 22 22892465 22892465 C G PRAME Missense_Mutation p.K212N 0.40 deleterious(0.02) possibly_damaging(0.887) TCGA-49-AARE-01 22 24581858 24581858 C - SUSD2 Frame_Shift_Del p.S435Pfs*22 0.62 TCGA-49-AARE-01 22 24581862 24581862 C T SUSD2 Missense_Mutation p.S435F 0.59 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 22 24582254 24582254 G C SUSD2 Missense_Mutation p.A505P 0.17 deleterious(0) probably_damaging(0.954) TCGA-49-AARE-01 22 26117278 26117278 C A ADRBK2 Missense_Mutation p.L607I 0.17 tolerated_low_confidence(0.4) benign(0.003) TCGA-49-AARE-01 22 26422633 26422633 G A MYO18B Silent p.R2231R 0.29 TCGA-49-AARE-01 22 28193613 28193613 C A MN1 Silent p.G973G 0.30 TCGA-49-AARE-01 22 30639607 30639607 C A LIF 3'UTR 0.19 TCGA-49-AARE-01 22 37771359 37771359 G A ELFN2 Silent p.Y72Y 0.24 TCGA-49-AARE-01 22 38086802 38086802 G T NOL12 Splice_Site p.X160_splice 0.33 TCGA-49-AARE-01 22 39477577 39477577 G T APOBEC3G Missense_Mutation p.G190W 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-49-AARE-01 22 39711441 39711441 C T RPL3 Silent p.V207V 0.19 TCGA-49-AARE-01 22 39884611 39884611 C A MGAT3 Missense_Mutation p.S420Y 0.28 deleterious(0) probably_damaging(0.936) TCGA-49-AARE-01 22 40057185 40057185 T A CACNA1I Missense_Mutation p.L924Q 0.28 deleterious(0.03) possibly_damaging(0.54) TCGA-49-AARE-01 22 40078585 40078585 G C CACNA1I Missense_Mutation p.D1917H 0.25 tolerated(0.23) benign(0.001) TCGA-49-AARE-01 22 40161310 40161310 C A ENTHD1 Missense_Mutation p.E379D 0.24 tolerated(0.12) benign(0.022) TCGA-49-AARE-01 22 40356151 40356151 C A GRAP2 Missense_Mutation p.S88Y 0.14 deleterious(0) probably_damaging(0.995) TCGA-49-AARE-01 22 42608764 42608764 G C TCF20 Missense_Mutation p.Q850E 0.17 benign(0.04) TCGA-49-AARE-01 22 43831079 43831079 G C MPPED1 Missense_Mutation p.G117A 0.32 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 22 44237707 44237707 G T SULT4A1 Missense_Mutation p.P92Q 0.21 deleterious(0) benign(0.356) TCGA-49-AARE-01 22 46795730 46795730 C A CELSR1 Missense_Mutation p.G1766W 0.07 deleterious(0) probably_damaging(0.969) TCGA-49-AARE-01 2 10267019 10267019 C A RRM2 Missense_Mutation p.A256D 0.10 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-49-AARE-01 2 103010991 103010991 G A IL18R1 Missense_Mutation p.E392K 0.41 deleterious(0.01) probably_damaging(0.968) TCGA-49-AARE-01 2 103095698 103095698 C T SLC9A4 Silent p.R219R 0.16 TCGA-49-AARE-01 2 105924524 105924524 C A TGFBRAP1 Missense_Mutation p.V79L 0.34 deleterious(0.01) possibly_damaging(0.826) TCGA-49-AARE-01 2 107459504 107459504 C G ST6GAL2 Missense_Mutation p.L310F 0.36 probably_damaging(0.991) TCGA-49-AARE-01 2 108478140 108478140 G A RGPD4 Missense_Mutation p.G717S 0.39 tolerated(0.18) benign(0) TCGA-49-AARE-01 2 110935965 110935965 A - NPHP1 Intron 0.31 TCGA-49-AARE-01 2 111881433 111881433 G A BCL2L11 Silent p.Q37Q 0.09 TCGA-49-AARE-01 2 113500190 113500190 G C NT5DC4 3'UTR 0.33 TCGA-49-AARE-01 2 113940498 113940498 G T PSD4 Silent p.V155V 0.16 TCGA-49-AARE-01 2 116600025 116600025 G T DPP10 3'Flank 0.53 TCGA-49-AARE-01 2 11750870 11750870 C - GREB1 Frame_Shift_Del p.A908Gfs*4 0.14 TCGA-49-AARE-01 2 11932092 11932092 G A LPIN1 Nonsense_Mutation p.W638* 0.34 TCGA-49-AARE-01 2 121748221 121748221 G A GLI2 Silent p.E1577E 0.41 TCGA-49-AARE-01 2 125281884 125281884 C A CNTNAP5 Missense_Mutation p.S443R 0.13 tolerated(0.27) benign(0.011) TCGA-49-AARE-01 2 128322820 128322820 C A MYO7B Silent p.R49R 0.26 TCGA-49-AARE-01 2 130934204 130934205 - A SMPD4 Frame_Shift_Ins p.A27Cfs*2 0.15 TCGA-49-AARE-01 2 131099431 131099431 C A CCDC115 Missense_Mutation p.Q66H 0.27 tolerated(0.17) benign(0.015) TCGA-49-AARE-01 2 131520805 131520805 A C AMER3 Missense_Mutation p.Y387S 0.19 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 2 133403075 133403075 C T GPR39 Nonsense_Mutation p.Q420* 0.11 TCGA-49-AARE-01 2 135872930 135872930 G T RAB3GAP1 Silent p.L209L 0.28 TCGA-49-AARE-01 2 136399329 136399329 A C R3HDM1 Silent p.P481P 0.15 TCGA-49-AARE-01 2 136511107 136511107 A G UBXN4 Splice_Site p.X62_splice 0.12 TCGA-49-AARE-01 2 136566416 136566416 G T LCT Silent p.T1167T 0.12 TCGA-49-AARE-01 2 141641537 141641537 G T LRP1B Missense_Mutation p.L1340M 0.14 benign(0.022) TCGA-49-AARE-01 2 142012104 142012104 C A LRP1B Silent p.G150G 0.12 TCGA-49-AARE-01 2 144276905 144276905 G A ARHGAP15 Silent p.K299K 0.19 TCGA-49-AARE-01 2 150433018 150433018 T A MMADHC Silent p.A137A 0.16 TCGA-49-AARE-01 2 155555442 155555442 G T KCNJ3 Missense_Mutation p.R52L 0.24 deleterious(0.01) possibly_damaging(0.637) TCGA-49-AARE-01 2 155555443 155555443 G T KCNJ3 Silent p.R52R 0.24 TCGA-49-AARE-01 2 155711763 155711763 G A KCNJ3 Missense_Mutation p.A482T 0.17 tolerated_low_confidence(0.82) benign(0.002) TCGA-49-AARE-01 2 15768780 15768780 C A DDX1 Missense_Mutation p.P593H 0.40 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 2 159517856 159517856 C A PKP4 Missense_Mutation p.S702Y 0.21 deleterious(0) probably_damaging(0.984) TCGA-49-AARE-01 2 160027300 160027300 G C TANC1 Silent p.P445P 0.28 TCGA-49-AARE-01 2 160255355 160255355 G A BAZ2B Silent p.A983A 0.31 TCGA-49-AARE-01 2 165986494 165986494 A T SCN3A Missense_Mutation p.C960S 0.21 deleterious(0) probably_damaging(0.996) TCGA-49-AARE-01 2 175436453 175436453 C A WIPF1 Silent p.P360P 0.14 TCGA-49-AARE-01 2 176948222 176948222 C T EVX2 Missense_Mutation p.A95T 0.15 deleterious(0.03) benign(0.054) TCGA-49-AARE-01 2 176973951 176973951 C A HOXD11 3'UTR 0.32 TCGA-49-AARE-01 2 176995361 176995361 G T HOXD8 Silent p.R89R 0.22 TCGA-49-AARE-01 2 179238675 179238675 G T OSBPL6 Missense_Mutation p.R510L 0.20 tolerated(0.07) probably_damaging(0.999) TCGA-49-AARE-01 2 179409151 179409151 G C TTN Nonsense_Mutation p.Y31935* 0.19 TCGA-49-AARE-01 2 179416999 179416999 C A TTN Missense_Mutation p.V30210L 0.17 TCGA-49-AARE-01 2 179434163 179434163 G A TTN Missense_Mutation p.L25566F 0.25 TCGA-49-AARE-01 2 179474895 179474895 G T TTN Missense_Mutation p.R17120S 0.33 TCGA-49-AARE-01 2 179528429 179528429 G T TTN Missense_Mutation p.P12153T 0.13 TCGA-49-AARE-01 2 179548797 179548797 G T TTN Missense_Mutation p.P10912Q 0.15 TCGA-49-AARE-01 2 179589084 179589084 C A TTN Missense_Mutation p.R7006S 0.11 TCGA-49-AARE-01 2 179590360 179590360 G A TTN Silent p.V6857V 0.22 TCGA-49-AARE-01 2 179593850 179593850 C A TTN Missense_Mutation p.L6305F 0.32 TCGA-49-AARE-01 2 179594853 179594853 T A TTN Missense_Mutation p.T6092S 0.21 TCGA-49-AARE-01 2 179595448 179595448 A C TTN Missense_Mutation p.L5938V 0.27 TCGA-49-AARE-01 2 179605686 179605686 G T TTN Missense_Mutation p.L4092I 0.13 TCGA-49-AARE-01 2 179611031 179611031 C A TTN Intron 0.26 TCGA-49-AARE-01 2 179614802 179614802 C A TTN Intron 0.11 TCGA-49-AARE-01 2 179632833 179632833 C T TTN Silent p.E3071E 0.09 TCGA-49-AARE-01 2 179641278 179641278 G C TTN Missense_Mutation p.D1771E 0.22 TCGA-49-AARE-01 2 179665137 179665137 C T TTN Missense_Mutation p.E190K 0.41 TCGA-49-AARE-01 2 17998012 17998012 G T MSGN1 Missense_Mutation p.S76I 0.31 tolerated(0.21) benign(0) TCGA-49-AARE-01 2 183616461 183616461 A T DNAJC10 Missense_Mutation p.Q461H 0.17 tolerated(0.14) probably_damaging(0.928) TCGA-49-AARE-01 2 184023117 184023118 - T NUP35 Frame_Shift_Ins p.V240Cfs*6 0.16 TCGA-49-AARE-01 2 189850400 189850400 G T COL3A1 Missense_Mutation p.G115C 0.33 unknown(0) TCGA-49-AARE-01 2 189855770 189855770 C T COL3A1 Missense_Mutation p.A280V 0.17 unknown(0) TCGA-49-AARE-01 2 190554499 190554499 G T ANKAR Missense_Mutation p.C283F 0.18 tolerated(0.76) benign(0.434) TCGA-49-AARE-01 2 190575833 190575833 A C ANKAR Silent p.V726V 0.15 TCGA-49-AARE-01 2 197594207 197594207 C A CCDC150 Intron 0.45 TCGA-49-AARE-01 2 197654781 197654781 A T GTF3C3 Nonsense_Mutation p.Y183* 0.43 TCGA-49-AARE-01 2 198400278 198400278 G T HSPE1-MOB4 Missense_Mutation p.D86Y 0.11 deleterious(0) probably_damaging(0.985) TCGA-49-AARE-01 2 201355311 201355311 C T KCTD18 Missense_Mutation p.E265K 0.10 deleterious_low_confidence(0.01) benign(0.124) TCGA-49-AARE-01 2 201719763 201719763 A C CLK1 Missense_Mutation p.I410M 0.15 deleterious(0) probably_damaging(0.998) TCGA-49-AARE-01 2 202614475 202614475 C A ALS2 Missense_Mutation p.G592V 0.18 deleterious(0) probably_damaging(0.986) TCGA-49-AARE-01 2 202626359 202626359 C A ALS2 Missense_Mutation p.A120S 0.24 tolerated(0.35) benign(0.015) TCGA-49-AARE-01 2 20458086 20458086 C A PUM2 Missense_Mutation p.G801V 0.44 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 2 206640992 206640992 C A NRP2 Intron 0.32 TCGA-49-AARE-01 2 206921577 206921577 C A INO80D Missense_Mutation p.R103S 0.21 tolerated_low_confidence(0.09) possibly_damaging(0.518) TCGA-49-AARE-01 2 207169791 207169791 C A ZDBF2 Missense_Mutation p.P180H 0.11 tolerated(0.09) possibly_damaging(0.893) TCGA-49-AARE-01 2 208865888 208865888 C T PLEKHM3 Nonsense_Mutation p.W159* 0.22 TCGA-49-AARE-01 2 209138446 209138446 C G PIKFYVE Missense_Mutation p.S104C 0.34 deleterious(0.01) benign(0.443) TCGA-49-AARE-01 2 210588404 210588404 G T MAP2 Intron 0.18 TCGA-49-AARE-01 2 212488688 212488688 C A ERBB4 Missense_Mutation p.V721L 0.33 tolerated(0.14) benign(0.007) TCGA-49-AARE-01 2 213872520 213872520 C A IKZF2 Missense_Mutation p.G382V 0.27 deleterious(0.01) probably_damaging(0.948) TCGA-49-AARE-01 2 216209501 216209501 G C ATIC Splice_Site p.X410_splice 0.15 TCGA-49-AARE-01 2 218755708 218755708 G A TNS1 Silent p.P156P 0.46 TCGA-49-AARE-01 2 219000521 219000521 G T CXCR2 Missense_Mutation p.G333C 0.15 deleterious(0) probably_damaging(0.997) TCGA-49-AARE-01 2 219892474 219892474 G T CCDC108 Nonsense_Mutation p.C703* 0.17 TCGA-49-AARE-01 2 220326694 220326694 G A SPEG Nonsense_Mutation p.W844* 0.15 TCGA-49-AARE-01 2 222298935 222298935 C A EPHA4 Missense_Mutation p.W808L 0.29 deleterious(0) probably_damaging(0.97) TCGA-49-AARE-01 2 226516172 226516172 G T NYAP2 Missense_Mutation p.G618V 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-49-AARE-01 2 226516362 226516362 T A NYAP2 3'UTR 0.11 TCGA-49-AARE-01 2 227963410 227963410 C T COL4A4 Missense_Mutation p.G402S 0.41 probably_damaging(0.982) TCGA-49-AARE-01 2 228882420 228882420 C A SPHKAP Silent p.T1050T 0.17 TCGA-49-AARE-01 2 231076184 231076184 C A SP110 Splice_Site p.X251_splice 0.18 TCGA-49-AARE-01 2 231314913 231314913 G T SP100 Missense_Mutation p.V255L 0.16 tolerated(0.21) benign(0.198) TCGA-49-AARE-01 2 232322480 232322480 C T NCL Missense_Mutation p.D441N 0.36 benign(0.156) TCGA-49-AARE-01 2 234102479 234102479 G A INPP5D Missense_Mutation p.R811Q 0.36 deleterious(0.03) possibly_damaging(0.844) TCGA-49-AARE-01 2 234854556 234854556 C G TRPM8 Missense_Mutation p.I252M 0.09 deleterious(0) benign(0.17) TCGA-49-AARE-01 2 241569979 241569979 A T GPR35 Missense_Mutation p.T235S 0.17 tolerated(0.45) benign(0.037) TCGA-49-AARE-01 2 242174574 242174574 C A HDLBP Nonsense_Mutation p.E1036* 0.14 TCGA-49-AARE-01 2 242195661 242195661 T G HDLBP Missense_Mutation p.T271P 0.14 tolerated(0.16) benign(0.072) TCGA-49-AARE-01 2 242610198 242610199 - T ATG4B Splice_Site p.X338_splice 0.35 TCGA-49-AARE-01 2 242757900 242757900 C T NEU4 Silent p.G340G 0.42 TCGA-49-AARE-01 2 24974871 24974871 G C NCOA1 Missense_Mutation p.A1243P 0.21 tolerated(1) benign(0.007) TCGA-49-AARE-01 2 25016319 25016319 G T CENPO 5'UTR 0.37 TCGA-49-AARE-01 2 25057763 25057763 G A ADCY3 Silent p.L569L 0.50 TCGA-49-AARE-01 2 26950806 26950806 C T KCNK3 Silent p.T185T 0.18 TCGA-49-AARE-01 2 27353642 27353642 T A ABHD1 3'UTR 0.53 TCGA-49-AARE-01 2 28561452 28561452 C T BRE 3'UTR 0.26 TCGA-49-AARE-01 2 32361994 32361994 C T SPAST Missense_Mutation p.A457V 0.11 deleterious(0) probably_damaging(0.915) TCGA-49-AARE-01 2 32477648 32477648 A T NLRC4 Missense_Mutation p.N34K 0.45 deleterious(0.01) probably_damaging(0.986) TCGA-49-AARE-01 2 32819034 32819034 G T BIRC6 Nonsense_Mutation p.E4470* 0.11 TCGA-49-AARE-01 2 36704200 36704200 G A CRIM1 Missense_Mutation p.C387Y 0.47 deleterious(0) probably_damaging(0.996) TCGA-49-AARE-01 2 37041398 37041398 C A VIT Missense_Mutation p.A659D 0.17 tolerated(0.32) benign(0.017) TCGA-49-AARE-01 2 37415586 37415586 G T SULT6B1 Nonsense_Mutation p.C28* 0.11 TCGA-49-AARE-01 2 40342495 40342495 G T SLC8A1 Silent p.P940P 0.11 TCGA-49-AARE-01 2 43802066 43802066 C A THADA Missense_Mutation p.D380Y 0.19 tolerated(0.78) benign(0.212) TCGA-49-AARE-01 2 44565663 44565663 C T PREPL Missense_Mutation p.A328T 0.08 deleterious(0.01) benign(0.243) TCGA-49-AARE-01 2 44617405 44617405 G C CAMKMT Missense_Mutation p.E113Q 0.11 tolerated(0.16) benign(0.116) TCGA-49-AARE-01 2 45169442 45169442 G T SIX3 Missense_Mutation p.G67C 0.17 deleterious(0.03) benign(0.004) TCGA-49-AARE-01 2 51255001 51255001 C A NRXN1 Missense_Mutation p.W137C 0.43 tolerated(0.17) possibly_damaging(0.854) TCGA-49-AARE-01 2 55816020 55816020 C A SMEK2 Nonsense_Mutation p.E332* 0.08 TCGA-49-AARE-01 2 60695924 60695924 G A BCL11A Missense_Mutation p.H144Y 0.09 tolerated(1) benign(0.006) TCGA-49-AARE-01 2 61145374 61145374 G T REL Missense_Mutation p.C195F 0.46 deleterious(0.03) probably_damaging(0.998) TCGA-49-AARE-01 2 71626765 71626765 G A ZNF638 Silent p.V859V 0.14 TCGA-49-AARE-01 2 71797870 71797870 G C DYSF Missense_Mutation p.R1076T 0.11 tolerated(0.09) benign(0.001) TCGA-49-AARE-01 2 72562075 72562075 C A EXOC6B Splice_Site p.X732_splice 0.19 TCGA-49-AARE-01 2 73681063 73681063 A G ALMS1 Missense_Mutation p.D2469G 0.25 probably_damaging(0.983) TCGA-49-AARE-01 2 86693533 86693533 G C KDM3A Missense_Mutation p.C349S 0.49 tolerated_low_confidence(0.23) benign(0.003) TCGA-49-AARE-01 2 87085527 87085527 T C CD8B Missense_Mutation p.N19S 0.22 tolerated(1) benign(0.001) TCGA-49-AARE-01 2 89197137 89197137 G A IGKV5-2 Missense_Mutation p.G61E 0.12 deleterious(0.02) probably_damaging(0.987) TCGA-49-AARE-01 2 8931265 8931265 T C KIDINS220 Missense_Mutation p.M456V 0.43 deleterious(0) probably_damaging(0.982) TCGA-49-AARE-01 2 89417267 89417267 C G IGKV1-17 Silent p.L14L 0.25 TCGA-49-AARE-01 2 89976393 89976393 C G IGKV2D-30 Missense_Mutation p.S88R 0.38 deleterious(0.02) probably_damaging(0.914) TCGA-49-AARE-01 2 89999503 89999503 G T IGKV2D-28 Missense_Mutation p.R102I 0.48 deleterious(0.01) benign(0.102) TCGA-49-AARE-01 2 90139107 90139107 G A IGKV1D-16 Translation_Start_Site p.M1? 0.06 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-49-AARE-01 2 96781328 96781328 G A ADRA2B Silent p.I187I 0.33 TCGA-49-AARE-01 2 96781619 96781619 C A ADRA2B Silent p.A90A 0.47 TCGA-49-AARE-01 2 97039146 97039146 A C NCAPH 3'UTR 0.33 TCGA-49-AARE-01 3 100373750 100373750 T A GPR128 Missense_Mutation p.L484H 0.32 deleterious(0) probably_damaging(0.988) TCGA-49-AARE-01 3 108174682 108174682 G T MYH15 Silent p.T741T 0.14 TCGA-49-AARE-01 3 109047874 109047874 G T DPPA4 Missense_Mutation p.H247Q 0.54 tolerated(0.5) benign(0.068) TCGA-49-AARE-01 3 111312691 111312691 G T ZBED2 Missense_Mutation p.Q120K 0.27 tolerated(0.88) benign(0.051) TCGA-49-AARE-01 3 113122710 113122710 C A WDR52 Nonsense_Mutation p.G387* 0.16 TCGA-49-AARE-01 3 113634606 113634606 C T GRAMD1C Silent p.I337I 0.26 TCGA-49-AARE-01 3 113667788 113667788 G T ZDHHC23 Missense_Mutation p.D47Y 0.23 deleterious(0) probably_damaging(0.987) TCGA-49-AARE-01 3 113784266 113784266 C T QTRTD1 Silent p.H66H 0.34 TCGA-49-AARE-01 3 11400036 11400036 A T ATG7 Missense_Mutation p.T477S 0.28 tolerated(0.65) possibly_damaging(0.735) TCGA-49-AARE-01 3 119445142 119445142 G T MAATS1 Missense_Mutation p.M269I 0.32 tolerated(0.06) possibly_damaging(0.891) TCGA-49-AARE-01 3 119582402 119582402 C A GSK3B Silent p.L333L 0.20 TCGA-49-AARE-01 3 121158875 121158875 T C POLQ Silent p.P2451P 0.16 TCGA-49-AARE-01 3 121340540 121340540 C A FBXO40 Nonsense_Mutation p.C88* 0.29 TCGA-49-AARE-01 3 121659302 121659302 G T SLC15A2 Silent p.V660V 0.10 TCGA-49-AARE-01 3 12458454 12458454 G A PPARG Missense_Mutation p.M357I 0.17 tolerated(0.06) benign(0.111) TCGA-49-AARE-01 3 124732568 124732568 C T HEG1 Missense_Mutation p.A619T 0.14 tolerated(0.13) benign(0.319) TCGA-49-AARE-01 3 124826665 124826665 T A SLC12A8 Silent p.L455L 0.22 TCGA-49-AARE-01 3 127816215 127816215 A C RUVBL1 Missense_Mutation p.L315R 0.37 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 3 132437945 132437945 C A NPHP3 Missense_Mutation p.R188M 0.25 deleterious(0) possibly_damaging(0.907) TCGA-49-AARE-01 3 13461610 13461611 - A NUP210 Frame_Shift_Ins p.A40Gfs*5 0.37 TCGA-49-AARE-01 3 13671399 13671399 C T FBLN2 Silent p.S974S 0.33 TCGA-49-AARE-01 3 139098012 139098012 C A COPB2 Missense_Mutation p.D78Y 0.24 deleterious(0) probably_damaging(0.996) TCGA-49-AARE-01 3 140409832 140409832 A G TRIM42 Missense_Mutation p.E628G 0.13 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 3 147113837 147113837 C T ZIC4 Missense_Mutation p.G214S 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-49-AARE-01 3 147113892 147113892 G T ZIC4 Silent p.S195S 0.17 TCGA-49-AARE-01 3 14746062 14746062 G A C3orf20 Missense_Mutation p.G366E 0.15 tolerated(0.44) benign(0.108) TCGA-49-AARE-01 3 148601443 148601443 C A CPA3 Silent p.G274G 0.25 TCGA-49-AARE-01 3 151105629 151105629 C G MED12L Missense_Mutation p.S1672C 0.18 deleterious(0) probably_damaging(0.997) TCGA-49-AARE-01 3 155199458 155199458 G A PLCH1 Nonsense_Mutation p.Q1461* 0.37 TCGA-49-AARE-01 3 15687016 15687016 G T BTD 3'UTR 0.34 TCGA-49-AARE-01 3 157081412 157081412 C A VEPH1 Silent p.L492L 0.35 TCGA-49-AARE-01 3 158402336 158402336 G T GFM1 Missense_Mutation p.K596N 0.09 deleterious(0.02) benign(0.035) TCGA-49-AARE-01 3 164700193 164700193 G A SI Silent p.T1751T 0.12 TCGA-49-AARE-01 3 164756866 164756866 A T SI Silent p.S767S 0.34 TCGA-49-AARE-01 3 164786880 164786880 G C SI Missense_Mutation p.T120R 0.24 tolerated(0.56) benign(0.001) TCGA-49-AARE-01 3 165491178 165491178 C A BCHE Missense_Mutation p.G601C 0.10 deleterious(0.01) probably_damaging(0.949) TCGA-49-AARE-01 3 166960334 166960335 CT A ZBBX Frame_Shift_Del p.K784Ifs*5 0.09 TCGA-49-AARE-01 3 169637281 169637281 C A SAMD7 5'UTR 0.42 TCGA-49-AARE-01 3 170732412 170732412 A T SLC2A2 Missense_Mutation p.S73T 0.38 tolerated(0.63) benign(0.048) TCGA-49-AARE-01 3 179605461 179605461 C A PEX5L Missense_Mutation p.V104L 0.32 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-49-AARE-01 3 182941217 182941217 G T MCF2L2 Missense_Mutation p.R740S 0.21 deleterious(0) possibly_damaging(0.896) TCGA-49-AARE-01 3 183899749 183899749 G T AP2M1 Missense_Mutation p.V293L 0.39 deleterious(0.02) benign(0.125) TCGA-49-AARE-01 3 184298517 184298517 G T EPHB3 Missense_Mutation p.G797C 0.17 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 3 185181413 185181413 G A MAP3K13 Missense_Mutation p.E452K 0.33 deleterious(0.02) benign(0.24) TCGA-49-AARE-01 3 186370059 186370059 C A FETUB Missense_Mutation p.A263D 0.17 tolerated(0.15) benign(0.374) TCGA-49-AARE-01 3 193049057 193049057 G T ATP13A5 Missense_Mutation p.T439N 0.42 deleterious(0) probably_damaging(0.955) TCGA-49-AARE-01 3 195925206 195925206 C A ZDHHC19 Missense_Mutation p.G297V 0.13 tolerated(0.09) benign(0) TCGA-49-AARE-01 3 197427740 197427740 C A KIAA0226 Silent p.R335R 0.39 TCGA-49-AARE-01 3 19947154 19947154 C A EFHB Missense_Mutation p.R459L 0.12 tolerated(0.07) benign(0.049) TCGA-49-AARE-01 3 2777969 2777969 G T CNTN4 Missense_Mutation p.E42D 0.26 tolerated(0.58) benign(0.001) TCGA-49-AARE-01 3 38035773 38035773 A T VILL Missense_Mutation p.T53S 0.44 tolerated(0.81) benign(0.042) TCGA-49-AARE-01 3 38087124 38087124 G A DLEC1 Missense_Mutation p.E168K 0.16 deleterious(0) possibly_damaging(0.596) TCGA-49-AARE-01 3 38347719 38347719 A T SLC22A14 Missense_Mutation p.R68W 0.17 tolerated(0.12) probably_damaging(0.997) TCGA-49-AARE-01 3 38739044 38739044 G T SCN10A Silent p.L1889L 0.14 TCGA-49-AARE-01 3 38743493 38743493 A G SCN10A Silent p.D1498D 0.16 TCGA-49-AARE-01 3 38766699 38766699 C T SCN10A Nonsense_Mutation p.W1065* 0.15 TCGA-49-AARE-01 3 38888300 38888300 C A SCN11A Missense_Mutation p.G1754V 0.27 tolerated(0.47) probably_damaging(0.953) TCGA-49-AARE-01 3 44955097 44955097 C A TGM4 Silent p.T645T 0.25 TCGA-49-AARE-01 3 47162129 47162129 C A SETD2 Missense_Mutation p.D1333Y 0.19 deleterious(0) possibly_damaging(0.885) TCGA-49-AARE-01 3 47164287 47164287 C - SETD2 Frame_Shift_Del p.S614Lfs*8 0.12 TCGA-49-AARE-01 3 48266781 48266781 A T CAMP Splice_Site p.X131_splice 0.18 TCGA-49-AARE-01 3 49051371 49051371 G A WDR6 Missense_Mutation p.V832M 0.20 deleterious(0.02) possibly_damaging(0.658) TCGA-49-AARE-01 3 49138847 49138847 T C QARS Missense_Mutation p.N273D 0.19 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 3 51370633 51370633 T A DOCK3 Missense_Mutation p.I1187N 0.18 tolerated(0.05) benign(0.248) TCGA-49-AARE-01 3 51864584 51864584 C G IQCF3 Missense_Mutation p.R78G 0.14 deleterious(0.03) benign(0.028) TCGA-49-AARE-01 3 52356487 52356487 G T DNAH1 Missense_Mutation p.S10I 0.30 benign(0.123) TCGA-49-AARE-01 3 52409998 52409998 G T DNAH1 Missense_Mutation p.R2396L 0.20 benign(0.03) TCGA-49-AARE-01 3 52821971 52821971 C T ITIH1 Intron 0.18 TCGA-49-AARE-01 3 53326309 53326309 G A DCP1A Silent p.S391S 0.21 TCGA-49-AARE-01 3 58622130 58622130 C T FAM3D Missense_Mutation p.R159K 0.14 tolerated(0.09) benign(0.398) TCGA-49-AARE-01 3 58622131 58622131 T A FAM3D Missense_Mutation p.R159W 0.14 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 3 61989058 61989058 G T PTPRG Nonsense_Mutation p.G136* 0.30 TCGA-49-AARE-01 3 65416549 65416549 G A MAGI1 Silent p.P457P 0.13 TCGA-49-AARE-01 3 68593690 68593690 T A FAM19A1 3'UTR 0.15 TCGA-49-AARE-01 3 7348331 7348331 C T GRM7 Missense_Mutation p.T342M 0.19 deleterious(0.03) probably_damaging(0.954) TCGA-49-AARE-01 3 77671460 77671460 G C ROBO2 Missense_Mutation p.E1229Q 0.20 tolerated(0.19) benign(0.403) TCGA-49-AARE-01 3 86010626 86010626 C G CADM2 Missense_Mutation p.P260A 0.16 tolerated(0.46) benign(0.039) TCGA-49-AARE-01 3 87276700 87276700 G T CHMP2B Missense_Mutation p.V10L 0.15 tolerated(0.32) benign(0.002) TCGA-49-AARE-01 3 8787292 8787292 C A CAV3 Missense_Mutation p.F65L 0.25 deleterious(0) possibly_damaging(0.484) TCGA-49-AARE-01 3 95374214 95374214 C A MTHFD2P1 RNA 0.42 TCGA-49-AARE-01 4 104079483 104079483 C G CENPE Missense_Mutation p.E1003Q 0.28 benign(0.04) TCGA-49-AARE-01 4 10573386 10573386 C T CLNK Missense_Mutation p.M43I 0.59 tolerated(1) benign(0) TCGA-49-AARE-01 4 113303587 113303587 A C ALPK1 Missense_Mutation p.Q52P 0.30 deleterious(0) possibly_damaging(0.866) TCGA-49-AARE-01 4 113353194 113353194 G T ALPK1 Missense_Mutation p.D831Y 0.36 deleterious(0.01) possibly_damaging(0.73) TCGA-49-AARE-01 4 115748969 115748969 G T NDST4 3'UTR 0.42 TCGA-49-AARE-01 4 125590902 125590902 G A ANKRD50 Missense_Mutation p.S1177L 0.29 tolerated(0.1) benign(0.32) TCGA-49-AARE-01 4 126239321 126239321 A T FAT4 Silent p.P585P 0.16 TCGA-49-AARE-01 4 126336884 126336884 G T FAT4 Missense_Mutation p.V2256F 0.27 benign(0.365) TCGA-49-AARE-01 4 134073372 134073372 G T PCDH10 Missense_Mutation p.G693C 0.31 deleterious(0.03) probably_damaging(0.993) TCGA-49-AARE-01 4 138442449 138442449 C A PCDH18 Missense_Mutation p.G1048C 0.42 deleterious(0.04) benign(0.401) TCGA-49-AARE-01 4 140641120 140641120 A G MAML3 Missense_Mutation p.I925T 0.15 benign(0.062) TCGA-49-AARE-01 4 141847171 141847171 G T RNF150 Missense_Mutation p.P316H 0.45 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 4 146575147 146575147 G T MMAA Missense_Mutation p.G274V 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-49-AARE-01 4 151837604 151837604 T C LRBA Silent p.S281S 0.37 TCGA-49-AARE-01 4 15516488 15516488 G C CC2D2A Missense_Mutation p.Q292H 0.18 tolerated(0.57) benign(0.005) TCGA-49-AARE-01 4 169083786 169083786 C A ANXA10 Silent p.A101A 0.18 TCGA-49-AARE-01 4 169172245 169172245 C T DDX60 Missense_Mutation p.V1240I 0.20 tolerated(0.73) benign(0.083) TCGA-49-AARE-01 4 175564857 175564857 G T GLRA3 3'UTR 0.22 TCGA-49-AARE-01 4 177605130 177605130 C A VEGFC Nonsense_Mutation p.E404* 0.05 TCGA-49-AARE-01 4 185552287 185552287 A G CASP3 Missense_Mutation p.C170R 0.41 tolerated(0.51) possibly_damaging(0.645) TCGA-49-AARE-01 4 186097179 186097179 G T KIAA1430 Missense_Mutation p.P361T 0.38 tolerated(0.13) probably_damaging(0.968) TCGA-49-AARE-01 4 187630985 187630985 T A FAT1 5'UTR 0.29 TCGA-49-AARE-01 4 22748994 22748994 T G GBA3 Missense_Mutation p.F121C 0.57 deleterious(0) probably_damaging(0.994) TCGA-49-AARE-01 4 23816058 23816058 C G PPARGC1A Missense_Mutation p.E350Q 0.15 deleterious(0.02) benign(0.299) TCGA-49-AARE-01 4 36230204 36230204 C A ARAP2 Missense_Mutation p.S302I 0.11 deleterious(0) possibly_damaging(0.827) TCGA-49-AARE-01 4 37846061 37846061 G T PGM2 Missense_Mutation p.A266S 0.38 tolerated(0.07) benign(0.431) TCGA-49-AARE-01 4 38828952 38828952 C T TLR6 Missense_Mutation p.E715K 0.22 deleterious(0) probably_damaging(0.992) TCGA-49-AARE-01 4 41750689 41750689 G A PHOX2B 5'UTR 0.50 TCGA-49-AARE-01 4 41984330 41984330 C A DCAF4L1 Missense_Mutation p.P174H 0.16 deleterious(0.01) probably_damaging(0.928) TCGA-49-AARE-01 4 42509122 42509122 T A ATP8A1 Missense_Mutation p.Q666L 0.21 deleterious(0.03) benign(0.037) TCGA-49-AARE-01 4 42509123 42509123 G A ATP8A1 Nonsense_Mutation p.Q666* 0.21 TCGA-49-AARE-01 4 46305494 46305494 G T GABRA2 Missense_Mutation p.P280H 0.36 deleterious(0) probably_damaging(0.994) TCGA-49-AARE-01 4 46390709 46390709 C A GABRA2 Missense_Mutation p.L5F 0.40 tolerated_low_confidence(0.71) benign(0.039) TCGA-49-AARE-01 4 46737020 46737020 C G COX7B2 Missense_Mutation p.E64Q 0.26 tolerated(0.12) possibly_damaging(0.461) TCGA-49-AARE-01 4 47408776 47408776 G C GABRB1 Missense_Mutation p.A305P 0.17 deleterious(0.02) probably_damaging(0.933) TCGA-49-AARE-01 4 55161361 55161361 C T PDGFRA Silent p.D1064D 0.43 TCGA-49-AARE-01 4 56765938 56765938 G T EXOC1 Missense_Mutation p.R742L 0.23 deleterious(0.01) possibly_damaging(0.647) TCGA-49-AARE-01 4 62935948 62935948 A T LPHN3 Silent p.I1244I 0.50 TCGA-49-AARE-01 4 66356372 66356372 C A EPHA5 Silent p.L375L 0.53 TCGA-49-AARE-01 4 68484822 68484822 C T UBA6 Missense_Mutation p.E1018K 0.18 tolerated(1) benign(0.007) TCGA-49-AARE-01 4 68810308 68810308 G T TMPRSS11A Missense_Mutation p.Q61K 0.37 tolerated(0.43) benign(0.106) TCGA-49-AARE-01 4 69973971 69973971 G A UGT2B7 Missense_Mutation p.R414K 0.36 tolerated(0.45) benign(0.001) TCGA-49-AARE-01 4 70461980 70461980 C A UGT2A1 Missense_Mutation p.Q328H 0.10 deleterious(0) benign(0.301) TCGA-49-AARE-01 4 71497422 71497422 T C ENAM Silent p.F30F 0.25 TCGA-49-AARE-01 4 74703405 74703405 A T CXCL6 3'UTR 0.16 TCGA-49-AARE-01 4 84376946 84376946 C A HELQ 5'UTR 0.56 TCGA-49-AARE-01 4 95129734 95129734 A G SMARCAD1 Silent p.T63T 0.43 TCGA-49-AARE-01 4 95129736 95129736 G C SMARCAD1 Splice_Site p.X64_splice 0.41 TCGA-49-AARE-01 4 96091430 96091430 C A UNC5C Silent p.T835T 0.38 TCGA-49-AARE-01 4 96761975 96761975 A G PDHA2 Missense_Mutation p.Y225C 0.29 deleterious(0.03) possibly_damaging(0.603) TCGA-49-AARE-01 5 110428025 110428025 G T WDR36 Silent p.S13S 0.12 TCGA-49-AARE-01 5 11346584 11346584 G A CTNND2 Missense_Mutation p.P510S 0.30 tolerated(0.09) benign(0.015) TCGA-49-AARE-01 5 11346612 11346612 C A CTNND2 Silent p.A500A 0.35 TCGA-49-AARE-01 5 115336156 115336156 T C AQPEP Silent p.S514S 0.24 TCGA-49-AARE-01 5 118965449 118965449 C T FAM170A 5'UTR 0.20 TCGA-49-AARE-01 5 122717847 122717847 C A CEP120 Missense_Mutation p.W687C 0.18 deleterious(0) probably_damaging(0.984) TCGA-49-AARE-01 5 125824567 125824567 A G GRAMD3 Missense_Mutation p.I429V 0.18 deleterious(0.01) benign(0.061) TCGA-49-AARE-01 5 126778734 126778734 G T MEGF10 Missense_Mutation p.D803Y 0.24 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 5 127597592 127597592 C A FBN2 Missense_Mutation p.V2734F 0.19 deleterious(0) possibly_damaging(0.606) TCGA-49-AARE-01 5 127622536 127622536 C A FBN2 Missense_Mutation p.D2296Y 0.36 deleterious(0) probably_damaging(0.998) TCGA-49-AARE-01 5 129520233 129520233 G T CHSY3 Missense_Mutation p.W466C 0.15 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 5 130883880 130883880 C G RAPGEF6 Missense_Mutation p.E119Q 0.15 deleterious(0.01) possibly_damaging(0.653) TCGA-49-AARE-01 5 132094199 132094199 A T SEPT8 Intron 0.30 TCGA-49-AARE-01 5 132648451 132648451 C A FSTL4 Missense_Mutation p.D208Y 0.45 deleterious(0.01) benign(0.377) TCGA-49-AARE-01 5 136328179 136328179 G T SPOCK1 Missense_Mutation p.Q234K 0.18 tolerated(0.92) possibly_damaging(0.551) TCGA-49-AARE-01 5 138658161 138658161 A T MATR3 Nonsense_Mutation p.R582* 0.11 TCGA-49-AARE-01 5 139267018 139267018 G A NRG2 Missense_Mutation p.A260V 0.28 tolerated(0.25) benign(0.101) TCGA-49-AARE-01 5 140011760 140011760 G T CD14 Missense_Mutation p.P270Q 0.23 deleterious(0) benign(0.112) TCGA-49-AARE-01 5 140048306 140048306 A G WDR55 Missense_Mutation p.M164V 0.15 tolerated(0.22) benign(0.021) TCGA-49-AARE-01 5 140081643 140081643 G C ZMAT2 Missense_Mutation p.K55N 0.18 deleterious(0.01) benign(0.354) TCGA-49-AARE-01 5 140175168 140175168 G A PCDHA2 Missense_Mutation p.E207K 0.15 tolerated_low_confidence(0.06) benign(0.027) TCGA-49-AARE-01 5 140175986 140175986 G T PCDHA2 Silent p.A479A 0.13 TCGA-49-AARE-01 5 140188443 140188443 C T PCDHA4 Silent p.D557D 0.16 TCGA-49-AARE-01 5 140209296 140209296 G A PCDHA6 Silent p.A540A 0.22 TCGA-49-AARE-01 5 140221949 140221949 C A PCDHA8 Missense_Mutation p.P348H 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-49-AARE-01 5 140222519 140222519 G C PCDHA8 Missense_Mutation p.R538P 0.20 deleterious_low_confidence(0.01) benign(0.322) TCGA-49-AARE-01 5 140262409 140262409 C A PCDHA13 Missense_Mutation p.L186I 0.26 deleterious_low_confidence(0.02) benign(0.001) TCGA-49-AARE-01 5 140476344 140476344 C - PCDHB2 Frame_Shift_Del p.A658Pfs*84 0.18 TCGA-49-AARE-01 5 140480816 140480816 G T PCDHB3 Missense_Mutation p.V195L 0.09 deleterious_low_confidence(0.01) benign(0.193) TCGA-49-AARE-01 5 140537529 140537529 C A PCDHB17 3'UTR 0.08 TCGA-49-AARE-01 5 140554692 140554692 C A PCDHB7 Missense_Mutation p.T759K 0.22 deleterious_low_confidence(0) benign(0.304) TCGA-49-AARE-01 5 140562604 140562604 C A PCDHB16 Missense_Mutation p.A157D 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-49-AARE-01 5 140563987 140563987 G T PCDHB16 Missense_Mutation p.W618L 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.899) TCGA-49-AARE-01 5 140579393 140579393 C A PCDHB11 Missense_Mutation p.L16I 0.22 tolerated_low_confidence(0.48) benign(0.008) TCGA-49-AARE-01 5 140720800 140720800 C A PCDHGA2 Silent p.S754S 0.20 TCGA-49-AARE-01 5 140724444 140724444 G T PCDHGA3 Missense_Mutation p.D282Y 0.26 tolerated_low_confidence(0.09) possibly_damaging(0.456) TCGA-49-AARE-01 5 140725337 140725337 T A PCDHGA3 Silent p.P579P 0.21 TCGA-49-AARE-01 5 140725691 140725691 G T PCDHGA3 Silent p.V697V 0.16 TCGA-49-AARE-01 5 140762955 140762955 C A PCDHGA7 Silent p.G163G 0.29 TCGA-49-AARE-01 5 140764536 140764536 G T PCDHGA7 Silent p.T690T 0.27 TCGA-49-AARE-01 5 140767935 140767935 A G PCDHGB4 Missense_Mutation p.I162V 0.31 tolerated(1) benign(0.023) TCGA-49-AARE-01 5 140782965 140782965 G A PCDHGA9 Missense_Mutation p.G149E 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.771) TCGA-49-AARE-01 5 140802945 140802945 G C PCDHGA11 Silent p.L717L 0.22 TCGA-49-AARE-01 5 141314086 141314086 A C KIAA0141 Missense_Mutation p.T362P 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-49-AARE-01 5 142500605 142500605 G T ARHGAP26 Missense_Mutation p.V531L 0.19 deleterious(0.01) benign(0.143) TCGA-49-AARE-01 5 145537077 145537077 C A LARS Silent p.T318T 0.19 TCGA-49-AARE-01 5 146017957 146017957 G C PPP2R2B Missense_Mutation p.A219G 0.24 deleterious(0.02) benign(0.074) TCGA-49-AARE-01 5 146792209 146792209 C A DPYSL3 Missense_Mutation p.A309S 0.28 tolerated(0.06) possibly_damaging(0.817) TCGA-49-AARE-01 5 148627361 148627361 G T ABLIM3 Missense_Mutation p.G523V 0.18 deleterious(0.02) probably_damaging(0.963) TCGA-49-AARE-01 5 154397063 154397063 C A KIF4B Missense_Mutation p.A1215D 0.20 tolerated_low_confidence(0.39) benign(0.258) TCGA-49-AARE-01 5 156589690 156589690 T A FAM71B Missense_Mutation p.K529M 0.16 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 5 156741390 156741390 C T CYFIP2 Silent p.D357D 0.10 TCGA-49-AARE-01 5 157218797 157218797 C T CLINT1 Missense_Mutation p.A432T 0.27 tolerated(1) benign(0.004) TCGA-49-AARE-01 5 161116269 161116269 C A GABRA6 Silent p.I152I 0.17 TCGA-49-AARE-01 5 16463848 16463848 C A ZNF622 Missense_Mutation p.W210L 0.06 tolerated(0.63) probably_damaging(0.999) TCGA-49-AARE-01 5 167551988 167551988 C A TENM2 Silent p.G714G 0.32 TCGA-49-AARE-01 5 169535345 169535345 G T FOXI1 Silent p.V289V 0.19 TCGA-49-AARE-01 5 171520746 171520746 C A STK10 Silent p.V408V 0.29 TCGA-49-AARE-01 5 175530758 175530758 G C FAM153B Splice_Site p.X169_splice 0.10 TCGA-49-AARE-01 5 176025435 176025435 T C GPRIN1 Missense_Mutation p.I467M 0.13 tolerated(0.24) benign(0.005) TCGA-49-AARE-01 5 176517631 176517631 A C FGFR4 Missense_Mutation p.Q111P 0.27 tolerated(0.21) benign(0.071) TCGA-49-AARE-01 5 176885505 176885505 T C DBN1 Missense_Mutation p.T446A 0.28 tolerated(0.9) benign(0.002) TCGA-49-AARE-01 5 176885618 176885618 T A DBN1 Missense_Mutation p.Q408L 0.18 tolerated(0.32) benign(0.004) TCGA-49-AARE-01 5 178310565 178310565 A T ZNF354B Missense_Mutation p.Y371F 0.11 tolerated(0.51) probably_damaging(0.925) TCGA-49-AARE-01 5 24488006 24488006 C T CDH10 Silent p.R711R 0.47 TCGA-49-AARE-01 5 24535307 24535307 C A CDH10 Missense_Mutation p.G243V 0.47 tolerated(0.59) probably_damaging(0.924) TCGA-49-AARE-01 5 24537771 24537771 G T CDH10 Missense_Mutation p.Q82K 0.33 tolerated(0.77) benign(0.092) TCGA-49-AARE-01 5 26903806 26903806 T A CDH9 Silent p.A313A 0.13 TCGA-49-AARE-01 5 26903934 26903934 C A CDH9 Splice_Site p.X271_splice 0.25 TCGA-49-AARE-01 5 34042976 34042976 C G C1QTNF3 Silent p.P85P 0.10 TCGA-49-AARE-01 5 35040768 35040768 A T AGXT2 Missense_Mutation p.L30Q 0.12 tolerated(0.13) benign(0.11) TCGA-49-AARE-01 5 35807290 35807290 G A SPEF2 Missense_Mutation p.A1772T 0.22 tolerated(0.19) possibly_damaging(0.586) TCGA-49-AARE-01 5 36039667 36039667 C T UGT3A2 Nonsense_Mutation p.W329* 0.52 TCGA-49-AARE-01 5 37370835 37370835 C A NUP155 Intron 0.49 TCGA-49-AARE-01 5 433022 433022 G T AHRR Missense_Mutation p.G380C 0.41 deleterious(0) probably_damaging(0.994) TCGA-49-AARE-01 5 43381792 43381792 G T CCL28 3'UTR 0.36 TCGA-49-AARE-01 5 43506192 43506192 T A C5orf34 Missense_Mutation p.E197V 0.19 deleterious(0) possibly_damaging(0.89) TCGA-49-AARE-01 5 43509264 43509264 C T C5orf34 Missense_Mutation p.V60I 0.37 deleterious(0.01) possibly_damaging(0.716) TCGA-49-AARE-01 5 45645477 45645477 C G HCN1 Missense_Mutation p.S220T 0.23 tolerated(0.99) probably_damaging(0.987) TCGA-49-AARE-01 5 49695726 49695726 A T EMB Silent p.G311G 0.13 TCGA-49-AARE-01 5 50687162 50687162 G A ISL1 Missense_Mutation p.D274N 0.13 tolerated(0.1) benign(0.046) TCGA-49-AARE-01 5 52221225 52221225 G T ITGA1 Missense_Mutation p.V841F 0.10 tolerated(0.66) possibly_damaging(0.866) TCGA-49-AARE-01 5 5232627 5232627 C A ADAMTS16 Silent p.P616P 0.35 TCGA-49-AARE-01 5 54586088 54586088 C A DHX29 Missense_Mutation p.G289C 0.22 deleterious(0.01) possibly_damaging(0.838) TCGA-49-AARE-01 5 66462816 66462816 T C MAST4 Silent p.F2603F 0.20 TCGA-49-AARE-01 5 74639728 74639728 C T HMGCR Silent p.A72A 0.11 TCGA-49-AARE-01 5 77423981 77423981 C T AP3B1 Missense_Mutation p.R614K 0.11 deleterious(0.01) benign(0.131) TCGA-49-AARE-01 5 79089289 79089289 C T CMYA5 Missense_Mutation p.P3940L 0.21 possibly_damaging(0.791) TCGA-49-AARE-01 5 80369031 80369031 T A RASGRF2 Missense_Mutation p.M216K 0.21 deleterious(0) benign(0.11) TCGA-49-AARE-01 5 82833417 82833417 A T VCAN Missense_Mutation p.Q1532L 0.14 tolerated(1) benign(0) TCGA-49-AARE-01 5 9044551 9044551 G C SEMA5A Silent p.P1013P 0.36 TCGA-49-AARE-01 5 94749780 94749780 T A FAM81B Silent p.A141A 0.20 TCGA-49-AARE-01 5 9629814 9629814 G C TAS2R1 Missense_Mutation p.R111G 0.35 deleterious(0.03) benign(0.005) TCGA-49-AARE-01 6 102337567 102337567 T C GRIK2 Missense_Mutation p.V526A 0.31 tolerated(0.47) benign(0.001) TCGA-49-AARE-01 6 107955753 107955753 G A SOBP Missense_Mutation p.D569N 0.46 tolerated_low_confidence(0.13) possibly_damaging(0.458) TCGA-49-AARE-01 6 111498506 111498506 T G SLC16A10 Missense_Mutation p.Y194D 0.45 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 6 111694067 111694067 C A REV3L Missense_Mutation p.D1831Y 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-49-AARE-01 6 117245927 117245927 T G RFX6 Missense_Mutation p.L551V 0.43 tolerated(0.07) possibly_damaging(0.642) TCGA-49-AARE-01 6 117715868 117715868 C G ROS1 Missense_Mutation p.R297T 0.20 tolerated(0.17) probably_damaging(0.999) TCGA-49-AARE-01 6 118791808 118791808 C A CEP85L Splice_Site p.X642_splice 0.37 TCGA-49-AARE-01 6 123369780 123369780 C A CLVS2 Missense_Mutation p.A193E 0.20 deleterious(0.01) probably_damaging(0.962) TCGA-49-AARE-01 6 132031230 132031230 G T CTAGE9 Missense_Mutation p.P310T 0.40 tolerated(0.21) benign(0.059) TCGA-49-AARE-01 6 132211567 132211567 C G ENPP1 Silent p.L898L 0.15 TCGA-49-AARE-01 6 135787419 135787419 C A AHI1 Silent p.T94T 0.41 TCGA-49-AARE-01 6 136597355 136597355 G C BCLAF1 Silent p.L436L 0.11 TCGA-49-AARE-01 6 136597473 136597473 G A BCLAF1 Missense_Mutation p.S397L 0.17 deleterious(0) possibly_damaging(0.504) TCGA-49-AARE-01 6 139167737 139167737 C A ECT2L Missense_Mutation p.H276N 0.50 tolerated(0.3) benign(0.008) TCGA-49-AARE-01 6 152685998 152685998 C A SYNE1 Missense_Mutation p.G3377W 0.25 benign(0.371) TCGA-49-AARE-01 6 152783920 152783920 A T SYNE1 Missense_Mutation p.L735I 0.10 benign(0.003) TCGA-49-AARE-01 6 161155039 161155039 C A PLG Missense_Mutation p.P534T 0.38 deleterious(0) probably_damaging(0.912) TCGA-49-AARE-01 6 166864713 166864713 C A RPS6KA2 Missense_Mutation p.G370C 0.28 deleterious(0.03) benign(0.366) TCGA-49-AARE-01 6 17675491 17675491 A T NUP153 Missense_Mutation p.F231Y 0.39 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 6 24178752 24178752 C T DCDC2 Missense_Mutation p.G378S 0.43 tolerated(0.25) benign(0.075) TCGA-49-AARE-01 6 24843470 24843470 C T FAM65B Missense_Mutation p.A514T 0.45 tolerated(0.33) benign(0.009) TCGA-49-AARE-01 6 25813362 25813362 G A SLC17A1 Silent p.I232I 0.07 TCGA-49-AARE-01 6 28297235 28297235 C A ZSCAN31 Nonsense_Mutation p.E76* 0.30 TCGA-49-AARE-01 6 30624393 30624393 C A DHX16 Silent p.V764V 0.37 TCGA-49-AARE-01 6 31936514 31936514 C T SKIV2L Missense_Mutation p.R1041C 0.20 deleterious(0.01) possibly_damaging(0.51) TCGA-49-AARE-01 6 32168733 32168733 G T NOTCH4 Missense_Mutation p.P1397Q 0.44 tolerated(0.35) probably_damaging(0.92) TCGA-49-AARE-01 6 33635698 33635698 G T ITPR3 Missense_Mutation p.V615L 0.14 deleterious(0) benign(0.292) TCGA-49-AARE-01 6 33660544 33660546 TTC - ITPR3 In_Frame_Del p.F2502del 0.11 TCGA-49-AARE-01 6 34392573 34392573 T A RPS10 Missense_Mutation p.R65S 0.25 deleterious(0.01) benign(0.395) TCGA-49-AARE-01 6 34825158 34825158 G T UHRF1BP1 Missense_Mutation p.S495I 0.18 deleterious(0) possibly_damaging(0.643) TCGA-49-AARE-01 6 38821010 38821010 G T DNAH8 Missense_Mutation p.D1657Y 0.55 possibly_damaging(0.863) TCGA-49-AARE-01 6 38997946 38997946 C T DNAH8 Silent p.L4417L 0.23 TCGA-49-AARE-01 6 39874588 39874588 C A MOCS1 3'UTR 0.51 TCGA-49-AARE-01 6 46761185 46761185 C A MEP1A Missense_Mutation p.A17D 0.35 tolerated(0.09) benign(0.235) TCGA-49-AARE-01 6 70589475 70589475 C A COL19A1 Missense_Mutation p.P6T 0.25 tolerated_low_confidence(0.41) unknown(0) TCGA-49-AARE-01 6 72011597 72011597 G A OGFRL1 Missense_Mutation p.E401K 0.26 deleterious_low_confidence(0.05) benign(0.194) TCGA-49-AARE-01 6 79577239 79577239 G T IRAK1BP1 5'UTR 0.17 TCGA-49-AARE-01 6 90647928 90647928 C T BACH2 Missense_Mutation p.A660T 0.44 deleterious(0) possibly_damaging(0.771) TCGA-49-AARE-01 7 100087057 100087057 G A NYAP1 Silent p.G571G 0.16 TCGA-49-AARE-01 7 100198474 100198474 G T FBXO24 Missense_Mutation p.R603S 0.23 deleterious_low_confidence(0.01) benign(0.001) TCGA-49-AARE-01 7 100459037 100459037 G T SLC12A9 Missense_Mutation p.W456L 0.32 deleterious(0) possibly_damaging(0.861) TCGA-49-AARE-01 7 100683694 100683694 G A MUC17 Silent p.V2999V 0.17 TCGA-49-AARE-01 7 100686856 100686856 G T MUC17 Missense_Mutation p.R4053S 0.22 benign(0) TCGA-49-AARE-01 7 100842050 100842050 C A MOGAT3 Missense_Mutation p.G117V 0.39 deleterious(0) probably_damaging(0.998) TCGA-49-AARE-01 7 102940720 102940720 C G PMPCB Nonsense_Mutation p.Y141* 0.40 TCGA-49-AARE-01 7 103017285 103017285 C T SLC26A5 Missense_Mutation p.G671S 0.18 tolerated(0.3) probably_damaging(1) TCGA-49-AARE-01 7 103017286 103017286 G T SLC26A5 Silent p.V670V 0.18 TCGA-49-AARE-01 7 103216146 103216146 G A RELN Silent p.T1384T 0.17 TCGA-49-AARE-01 7 105917576 105917576 T C NAMPT Missense_Mutation p.Y36C 0.30 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 7 106509879 106509879 G - PIK3CG Frame_Shift_Del p.L626* 0.14 TCGA-49-AARE-01 7 107748248 107748248 G T LAMB4 Missense_Mutation p.A140E 0.24 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 7 107763611 107763611 C T LAMB4 5'UTR 0.21 TCGA-49-AARE-01 7 110763170 110763170 G T LRRN3 Missense_Mutation p.K114N 0.32 tolerated(1) benign(0.002) TCGA-49-AARE-01 7 112407247 112407247 C - TMEM168 3'UTR 0.19 TCGA-49-AARE-01 7 113518561 113518561 C A PPP1R3A Silent p.L862L 0.42 TCGA-49-AARE-01 7 113519352 113519352 C A PPP1R3A Nonsense_Mutation p.E599* 0.40 TCGA-49-AARE-01 7 11452308 11452308 G T THSD7A Nonsense_Mutation p.C1219* 0.33 TCGA-49-AARE-01 7 11581111 11581111 G C THSD7A Missense_Mutation p.P586R 0.38 deleterious(0) probably_damaging(0.979) TCGA-49-AARE-01 7 117175301 117175301 G C CFTR Splice_Site p.X194_splice 0.28 TCGA-49-AARE-01 7 117424441 117424441 G T CTTNBP2 Silent p.T712T 0.40 TCGA-49-AARE-01 7 117432468 117432468 T C CTTNBP2 Missense_Mutation p.K261R 0.15 tolerated(0.23) benign(0.016) TCGA-49-AARE-01 7 117874755 117874755 G T ANKRD7 Missense_Mutation p.A99S 0.32 deleterious(0) probably_damaging(0.935) TCGA-49-AARE-01 7 120971861 120971861 C A WNT16 Missense_Mutation p.A159E 0.33 tolerated(0.8) benign(0.014) TCGA-49-AARE-01 7 122114548 122114548 C T CADPS2 Missense_Mutation p.G629S 0.33 deleterious(0.01) benign(0.323) TCGA-49-AARE-01 7 122342618 122342618 C A RNF148 Missense_Mutation p.G63W 0.33 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 7 122635016 122635016 C T TAS2R16 Missense_Mutation p.A225T 0.19 deleterious(0.05) probably_damaging(0.936) TCGA-49-AARE-01 7 122635507 122635507 C T TAS2R16 Nonsense_Mutation p.W61* 0.26 TCGA-49-AARE-01 7 123097437 123097437 C A IQUB Nonsense_Mutation p.E731* 0.22 TCGA-49-AARE-01 7 123593740 123593740 G T SPAM1 Missense_Mutation p.R39I 0.21 deleterious(0.03) benign(0.275) TCGA-49-AARE-01 7 128481361 128481361 G T FLNC Missense_Mutation p.D651Y 0.18 tolerated(0.25) probably_damaging(0.998) TCGA-49-AARE-01 7 128497244 128497244 C A FLNC Missense_Mutation p.P2545H 0.20 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 7 128498208 128498208 C A FLNC Missense_Mutation p.P2643T 0.38 deleterious(0.04) benign(0.013) TCGA-49-AARE-01 7 134346335 134346335 G T BPGM Missense_Mutation p.V26L 0.29 tolerated(0.5) possibly_damaging(0.82) TCGA-49-AARE-01 7 134635256 134635256 A G CALD1 Silent p.S642S 0.31 TCGA-49-AARE-01 7 136700948 136700948 A G CHRM2 Missense_Mutation p.T446A 0.16 tolerated(0.07) possibly_damaging(0.656) TCGA-49-AARE-01 7 137294283 137294283 C A DGKI Nonsense_Mutation p.E356* 0.12 TCGA-49-AARE-01 7 137792188 137792188 A - AKR1D1 Frame_Shift_Del p.K240Rfs*5 0.08 TCGA-49-AARE-01 7 138764761 138764761 G T ZC3HAV1 Missense_Mutation p.P309H 0.21 deleterious(0.02) benign(0.308) TCGA-49-AARE-01 7 141255319 141255319 G T AGK Missense_Mutation p.G18V 0.40 deleterious(0.01) possibly_damaging(0.659) TCGA-49-AARE-01 7 142021204 142021204 C A TRBV5-1 Missense_Mutation p.L62I 0.41 tolerated(0.27) benign(0.101) TCGA-49-AARE-01 7 142028367 142028367 C A TRBV6-1 Missense_Mutation p.T34K 0.16 tolerated(0.21) benign(0.165) TCGA-49-AARE-01 7 142562368 142562368 G C EPHB6 Missense_Mutation p.E270D 0.08 tolerated(1) benign(0.008) TCGA-49-AARE-01 7 142567995 142567995 G T EPHB6 Missense_Mutation p.R879L 0.16 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 7 142637501 142637501 G T C7orf34 Missense_Mutation p.V91L 0.16 tolerated(0.25) benign(0.025) TCGA-49-AARE-01 7 143175200 143175200 G T TAS2R41 Missense_Mutation p.G79C 0.17 deleterious(0.03) probably_damaging(0.928) TCGA-49-AARE-01 7 148701043 148701043 C G PDIA4 Missense_Mutation p.R594P 0.12 tolerated(0.22) possibly_damaging(0.463) TCGA-49-AARE-01 7 149418484 149418484 A G KRBA1 Silent p.R108R 0.27 TCGA-49-AARE-01 7 149430516 149430516 G C KRBA1 Missense_Mutation p.A824P 0.21 deleterious(0.03) probably_damaging(0.991) TCGA-49-AARE-01 7 150027920 150027920 G T ZBED6CL Nonsense_Mutation p.E143* 0.11 TCGA-49-AARE-01 7 150553730 150553730 C A AOC1 Missense_Mutation p.P58T 0.12 tolerated(0.15) benign(0.014) TCGA-49-AARE-01 7 150648642 150648642 C A KCNH2 Silent p.T613T 0.20 TCGA-49-AARE-01 7 151807672 151807672 G A GALNT11 Missense_Mutation p.G341E 0.18 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 7 151917682 151917682 C A KMT2C Missense_Mutation p.S1213I 0.23 probably_damaging(0.998) TCGA-49-AARE-01 7 154790377 154790377 C A PAXIP1 Missense_Mutation p.D67Y 0.21 deleterious(0.01) probably_damaging(0.961) TCGA-49-AARE-01 7 18066713 18066713 G A PRPS1L1 Silent p.L231L 0.20 TCGA-49-AARE-01 7 19156582 19156582 G T TWIST1 Silent p.T121T 0.24 TCGA-49-AARE-01 7 20668398 20668398 C G ABCB5 Missense_Mutation p.P66A 0.19 tolerated(0.16) benign(0.009) TCGA-49-AARE-01 7 20698255 20698255 C A ABCB5 Missense_Mutation p.L555M 0.32 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 7 21628193 21628193 G T DNAH11 Missense_Mutation p.A638S 0.22 benign(0.042) TCGA-49-AARE-01 7 21628992 21628992 G T DNAH11 Missense_Mutation p.G714C 0.42 probably_damaging(0.992) TCGA-49-AARE-01 7 23183484 23183484 A T KLHL7 Silent p.A211A 0.29 TCGA-49-AARE-01 7 23571498 23571498 G A TRA2A 5'UTR 0.16 TCGA-49-AARE-01 7 27134064 27134064 G A HOXA1 Missense_Mutation p.H335Y 0.27 deleterious_low_confidence(0.05) benign(0.291) TCGA-49-AARE-01 7 27203172 27203172 T A HOXA9 3'UTR 0.07 TCGA-49-AARE-01 7 27284903 27284903 C A EVX1 Missense_Mutation p.L222M 0.22 deleterious(0) probably_damaging(0.996) TCGA-49-AARE-01 7 28848938 28848938 A G CREB5 Silent p.A387A 0.18 TCGA-49-AARE-01 7 30911907 30911907 G T FAM188B Missense_Mutation p.G599C 0.18 deleterious(0) benign(0.429) TCGA-49-AARE-01 7 43283473 43283473 G A HECW1 Splice_Site 0.12 TCGA-49-AARE-01 7 43506084 43506084 C G HECW1 Missense_Mutation p.Q944E 0.27 deleterious(0.01) possibly_damaging(0.616) TCGA-49-AARE-01 7 44080529 44080529 C G DBNL 5'Flank 0.19 TCGA-49-AARE-01 7 44924320 44924320 C A PURB Missense_Mutation p.G210C 0.32 tolerated(0.07) possibly_damaging(0.884) TCGA-49-AARE-01 7 47698631 47698631 C A C7orf65 Silent p.A87A 0.26 TCGA-49-AARE-01 7 5331442 5331442 C T SLC29A4 Silent p.F178F 0.13 TCGA-49-AARE-01 7 54610397 54610397 C A VSTM2A 5'UTR 0.24 TCGA-49-AARE-01 7 5540782 5540782 C A FBXL18 Missense_Mutation p.S373I 0.37 tolerated(0.12) benign(0.157) TCGA-49-AARE-01 7 55991372 55991372 G T MRPS17 Missense_Mutation p.S83I 0.18 tolerated_low_confidence(0.44) unknown(0) TCGA-49-AARE-01 7 57188825 57188825 T C ZNF479 Silent p.P99P 0.10 TCGA-49-AARE-01 7 57528900 57528900 G C ZNF716 Missense_Mutation p.E245Q 0.34 deleterious(0.02) probably_damaging(0.995) TCGA-49-AARE-01 7 70252257 70252257 G T AUTS2 Nonsense_Mutation p.E791* 0.24 TCGA-49-AARE-01 7 70800687 70800687 G T WBSCR17 Silent p.L130L 0.38 TCGA-49-AARE-01 7 72727084 72727084 G C TRIM50 Missense_Mutation p.P433A 0.23 tolerated(0.14) possibly_damaging(0.559) TCGA-49-AARE-01 7 72754700 72754700 G T FKBP6 Missense_Mutation p.A217S 0.29 tolerated(0.73) benign(0.061) TCGA-49-AARE-01 7 72891462 72891462 A T BAZ1B Missense_Mutation p.W777R 0.21 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 7 73483017 73483017 G C ELN Missense_Mutation p.R721P 0.31 unknown(0) TCGA-49-AARE-01 7 74114686 74114686 C T GTF2I Silent p.H161H 0.33 TCGA-49-AARE-01 7 77326237 77326237 G T RSBN1L Missense_Mutation p.A151S 0.23 tolerated_low_confidence(0.27) unknown(0) TCGA-49-AARE-01 7 77885728 77885728 G T MAGI2 Missense_Mutation p.L527I 0.26 tolerated(0.28) benign(0.015) TCGA-49-AARE-01 7 86416132 86416132 C A GRM3 Missense_Mutation p.P342T 0.27 tolerated(0.15) probably_damaging(0.995) TCGA-49-AARE-01 7 87148741 87148741 G T ABCB1 Missense_Mutation p.S943Y 0.28 deleterious(0) probably_damaging(0.93) TCGA-49-AARE-01 7 99711689 99711689 T C TAF6 Silent p.K85K 0.14 TCGA-49-AARE-01 7 99758410 99758410 C A GAL3ST4 Missense_Mutation p.R201L 0.35 deleterious(0) possibly_damaging(0.71) TCGA-49-AARE-01 8 10285702 10285702 G T MSRA Silent p.R196R 0.17 TCGA-49-AARE-01 8 10388835 10388835 C T PRSS55 Silent p.T126T 0.12 TCGA-49-AARE-01 8 10390551 10390551 C A PRSS55 Missense_Mutation p.A245D 0.19 deleterious(0.01) probably_damaging(0.96) TCGA-49-AARE-01 8 104444897 104444897 A T DCAF13 Missense_Mutation p.D390V 0.10 tolerated(0.06) benign(0.091) TCGA-49-AARE-01 8 10469507 10469507 C A RP1L1 Missense_Mutation p.V701L 0.28 possibly_damaging(0.514) TCGA-49-AARE-01 8 109797272 109797272 C T TMEM74 Missense_Mutation p.R19K 0.19 tolerated(0.22) benign(0.019) TCGA-49-AARE-01 8 110431348 110431348 C A PKHD1L1 Missense_Mutation p.L795I 0.31 deleterious(0.03) possibly_damaging(0.843) TCGA-49-AARE-01 8 110453503 110453503 G C PKHD1L1 Splice_Site p.X1367_splice 0.20 TCGA-49-AARE-01 8 110453504 110453504 G T PKHD1L1 Missense_Mutation p.G1367V 0.20 deleterious(0) probably_damaging(0.954) TCGA-49-AARE-01 8 11281953 11281953 G T FAM167A Missense_Mutation p.L192I 0.11 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 8 113299431 113299431 C A CSMD3 Missense_Mutation p.G3065C 0.12 deleterious(0) probably_damaging(0.964) TCGA-49-AARE-01 8 113317129 113317129 C A CSMD3 Missense_Mutation p.S2696I 0.31 tolerated(0.07) probably_damaging(0.995) TCGA-49-AARE-01 8 113332191 113332191 G T CSMD3 Nonsense_Mutation p.C2395* 0.14 TCGA-49-AARE-01 8 116427267 116427267 T C TRPS1 Missense_Mutation p.I957V 0.25 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-49-AARE-01 8 11710912 11710912 G T CTSB Silent p.R18R 0.19 TCGA-49-AARE-01 8 11842047 11842047 T C DEFB135 Missense_Mutation p.I61T 0.14 tolerated(0.69) benign(0) TCGA-49-AARE-01 8 121457671 121457671 G T MTBP 5'UTR 0.32 TCGA-49-AARE-01 8 124664001 124664001 C T KLHL38 Missense_Mutation p.G389E 0.39 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 8 124664921 124664921 G T KLHL38 Silent p.P82P 0.18 TCGA-49-AARE-01 8 125072898 125072898 A T FER1L6 Missense_Mutation p.Q1032L 0.29 tolerated(0.09) probably_damaging(0.948) TCGA-49-AARE-01 8 126049494 126049494 A G KIAA0196 Missense_Mutation p.Y1056H 0.19 tolerated(0.18) probably_damaging(0.994) TCGA-49-AARE-01 8 13356754 13356754 C G DLC1 Missense_Mutation p.S276T 0.14 deleterious_low_confidence(0.01) benign(0.046) TCGA-49-AARE-01 8 143956569 143956569 G A CYP11B1 Missense_Mutation p.T401I 0.13 deleterious(0) benign(0.261) TCGA-49-AARE-01 8 144406217 144406217 C A TOP1MT Silent p.R304R 0.26 TCGA-49-AARE-01 8 144457722 144457722 G T RHPN1 Splice_Site p.X21_splice 0.21 TCGA-49-AARE-01 8 144464036 144464036 G T RHPN1 Missense_Mutation p.W565C 0.43 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 8 144812396 144812396 G A FAM83H Silent p.G119G 0.28 TCGA-49-AARE-01 8 144994757 144994757 C A PLEC Missense_Mutation p.V3215L 0.28 probably_damaging(0.999) TCGA-49-AARE-01 8 145108152 145108152 T C OPLAH Missense_Mutation p.Y944C 0.13 deleterious(0.02) possibly_damaging(0.618) TCGA-49-AARE-01 8 145112505 145112505 G A OPLAH Missense_Mutation p.S423F 0.18 deleterious(0) probably_damaging(0.951) TCGA-49-AARE-01 8 145666455 145666455 G T TONSL Missense_Mutation p.A302D 0.27 tolerated(0.38) possibly_damaging(0.548) TCGA-49-AARE-01 8 145758578 145758578 G A ARHGAP39 Silent p.P940P 0.29 TCGA-49-AARE-01 8 145998922 145998922 C A ZNF34 Missense_Mutation p.G471V 0.25 deleterious(0) probably_damaging(0.998) TCGA-49-AARE-01 8 146016700 146016700 G T RPL8 Missense_Mutation p.S154Y 0.28 deleterious(0.05) benign(0.345) TCGA-49-AARE-01 8 146277860 146277860 C T C8orf33 5'UTR 0.31 TCGA-49-AARE-01 8 18725364 18725364 C A PSD3 Missense_Mutation p.R485L 0.29 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 8 20036835 20036835 G T SLC18A1 Missense_Mutation p.S95R 0.37 tolerated(0.25) benign(0.025) TCGA-49-AARE-01 8 2005890 2005890 G T MYOM2 Silent p.V184V 0.35 TCGA-49-AARE-01 8 21977357 21977357 G T HR Missense_Mutation p.L965I 0.26 tolerated(0.41) benign(0.012) TCGA-49-AARE-01 8 23112921 23112921 A T CHMP7 Silent p.T211T 0.25 TCGA-49-AARE-01 8 26441374 26441374 G T DPYSL2 Missense_Mutation p.R63L 0.11 tolerated(0.25) benign(0.002) TCGA-49-AARE-01 8 2836321 2836321 C A CSMD1 Silent p.V2793V 0.53 TCGA-49-AARE-01 8 30700015 30700015 C G TEX15 Missense_Mutation p.K2173N 0.29 tolerated(0.14) possibly_damaging(0.711) TCGA-49-AARE-01 8 31014972 31014972 T C WRN Missense_Mutation p.L1303S 0.54 deleterious(0.01) benign(0.356) TCGA-49-AARE-01 8 3351165 3351165 G A CSMD1 Silent p.D476D 0.33 TCGA-49-AARE-01 8 37704456 37704456 C A BRF2 Missense_Mutation p.S151I 0.27 tolerated(0.09) benign(0.418) TCGA-49-AARE-01 8 39564337 39564337 G T ADAM18 Missense_Mutation p.C644F 0.34 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 8 42823300 42823300 G A HOOK3 Silent p.E355E 0.17 TCGA-49-AARE-01 8 51363289 51363289 G T SNTG1 Silent p.V121V 0.30 TCGA-49-AARE-01 8 51617274 51617274 T C SNTG1 Missense_Mutation p.F385L 0.32 deleterious(0) probably_damaging(0.962) TCGA-49-AARE-01 8 54730081 54730081 G A ATP6V1H Nonsense_Mutation p.Q106* 0.11 TCGA-49-AARE-01 8 55538613 55538613 G T RP1 Missense_Mutation p.G724V 0.41 tolerated(0.31) benign(0.008) TCGA-49-AARE-01 8 59059873 59059873 A G FAM110B Missense_Mutation p.R362G 0.28 deleterious(0) benign(0.201) TCGA-49-AARE-01 8 61741278 61741278 C T CHD7 Silent p.F1145F 0.32 TCGA-49-AARE-01 8 70591613 70591613 C A SLCO5A1 Missense_Mutation p.R675M 0.31 deleterious(0) probably_damaging(0.996) TCGA-49-AARE-01 8 71068260 71068260 T C NCOA2 Silent p.K780K 0.28 TCGA-49-AARE-01 8 71553211 71553211 G T LACTB2 Missense_Mutation p.Q223K 0.16 deleterious(0) benign(0.213) TCGA-49-AARE-01 8 72936049 72936049 C A TRPA1 Missense_Mutation p.R1050L 0.28 deleterious(0.03) probably_damaging(0.996) TCGA-49-AARE-01 8 72938208 72938208 C A TRPA1 Missense_Mutation p.G1013V 0.40 tolerated(0.5) benign(0.081) TCGA-49-AARE-01 8 72938209 72938209 C A TRPA1 Missense_Mutation p.G1013C 0.41 tolerated(0.22) benign(0.011) TCGA-49-AARE-01 8 77763422 77763422 G C ZFHX4 Missense_Mutation p.R1422P 0.30 possibly_damaging(0.655) TCGA-49-AARE-01 8 77767555 77767555 T A ZFHX4 Missense_Mutation p.F2800I 0.40 probably_damaging(0.974) TCGA-49-AARE-01 8 8197133 8197133 G A SGK223 Silent p.N725N 0.22 TCGA-49-AARE-01 8 82630417 82630417 C G ZFAND1 Missense_Mutation p.C33S 0.25 deleterious(0.02) possibly_damaging(0.782) TCGA-49-AARE-01 8 85441646 85441646 G T RALYL Silent p.T43T 0.12 TCGA-49-AARE-01 8 87460433 87460433 T C WWP1 Silent p.R685R 0.16 TCGA-49-AARE-01 8 88886170 88886170 C T DCAF4L2 Silent p.E10E 0.13 TCGA-49-AARE-01 8 89068356 89068356 C A MMP16 Missense_Mutation p.R458I 0.20 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 8 9592578 9592578 C T TNKS Silent p.T839T 0.26 TCGA-49-AARE-01 8 97243295 97243295 C A UQCRB 3'UTR 0.15 TCGA-49-AARE-01 8 97269265 97269265 G A MTERFD1 Missense_Mutation p.P138S 0.20 tolerated(0.41) benign(0.035) TCGA-49-AARE-01 8 99170181 99170181 G T POP1 Missense_Mutation p.K919N 0.34 tolerated(0.17) benign(0.013) TCGA-49-AARE-01 8 99441267 99441267 G C KCNS2 Missense_Mutation p.E354Q 0.16 deleterious(0.01) benign(0.291) TCGA-49-AARE-01 9 100222574 100222574 C T TDRD7 Missense_Mutation p.P324S 0.33 tolerated(0.46) benign(0.006) TCGA-49-AARE-01 9 103213163 103213163 A T MSANTD3 Missense_Mutation p.K248M 0.19 tolerated_low_confidence(0.15) possibly_damaging(0.767) TCGA-49-AARE-01 9 104238982 104238982 T A TMEM246 Missense_Mutation p.Q131H 0.41 tolerated(0.06) benign(0.366) TCGA-49-AARE-01 9 107361395 107361395 C A OR13C5 Missense_Mutation p.Q100H 0.39 deleterious(0) probably_damaging(0.997) TCGA-49-AARE-01 9 112898615 112898615 C T PALM2-AKAP2 Missense_Mutation p.P264L 0.11 deleterious(0.02) possibly_damaging(0.723) TCGA-49-AARE-01 9 113538154 113538154 C A MUSK Missense_Mutation p.S424Y 0.30 deleterious(0.01) benign(0.205) TCGA-49-AARE-01 9 116930012 116930012 C A COL27A1 Silent p.A59A 0.17 TCGA-49-AARE-01 9 117400893 117400893 G T C9orf91 Nonsense_Mutation p.E246* 0.28 TCGA-49-AARE-01 9 119977000 119977000 G A ASTN2 Silent p.L218L 0.30 TCGA-49-AARE-01 9 125377811 125377812 - A OR1Q1 Frame_Shift_Ins p.Y266Ifs*49 0.10 TCGA-49-AARE-01 9 125512951 125512951 C A OR1L6 Silent p.A275A 0.11 TCGA-49-AARE-01 9 126132960 126132960 G T CRB2 Missense_Mutation p.R543L 0.11 tolerated(0.12) possibly_damaging(0.569) TCGA-49-AARE-01 9 130098496 130098496 G A GARNL3 Missense_Mutation p.M321I 0.07 tolerated(0.15) possibly_damaging(0.892) TCGA-49-AARE-01 9 130167055 130167055 G A SLC2A8 Intron 0.43 TCGA-49-AARE-01 9 133932476 133932476 C A LAMC3 Silent p.P700P 0.14 TCGA-49-AARE-01 9 134020022 134020022 A T NUP214 Silent p.S550S 0.14 TCGA-49-AARE-01 9 135750581 135750581 C A AK8 Missense_Mutation p.M30I 0.15 deleterious(0.02) benign(0.003) TCGA-49-AARE-01 9 136202953 136202953 G T SURF6 Missense_Mutation p.A6D 0.38 deleterious(0.04) probably_damaging(0.99) TCGA-49-AARE-01 9 136302896 136302896 G T ADAMTS13 Missense_Mutation p.R488L 0.14 deleterious(0.03) possibly_damaging(0.713) TCGA-49-AARE-01 9 138378193 138378193 G T PPP1R26 Missense_Mutation p.V613L 0.42 tolerated(0.77) possibly_damaging(0.621) TCGA-49-AARE-01 9 139100748 139100748 G A QSOX2 Silent p.A641A 0.18 TCGA-49-AARE-01 9 139911462 139911462 C T ABCA2 Missense_Mutation p.D890N 0.30 tolerated(0.11) probably_damaging(0.983) TCGA-49-AARE-01 9 140036481 140036481 T A GRIN1 Missense_Mutation p.V92D 0.10 deleterious(0) possibly_damaging(0.908) TCGA-49-AARE-01 9 140099497 140099497 G C TMEM203 Missense_Mutation p.L124V 0.15 tolerated(0.07) possibly_damaging(0.496) TCGA-49-AARE-01 9 15777757 15777757 C A CCDC171 Missense_Mutation p.A944D 0.33 deleterious(0.04) possibly_damaging(0.615) TCGA-49-AARE-01 9 17466777 17466777 C T CNTLN Missense_Mutation p.A1248V 0.27 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 9 17795745 17795745 G A SH3GL2 3'UTR 0.14 TCGA-49-AARE-01 9 19352591 19352591 C A DENND4C Missense_Mutation p.A1521D 0.21 deleterious(0) benign(0.06) TCGA-49-AARE-01 9 2060973 2060973 G C SMARCA2 Missense_Mutation p.R560T 0.18 benign(0.227) TCGA-49-AARE-01 9 27284726 27284726 G T EQTN Silent p.R294R 0.18 TCGA-49-AARE-01 9 34372124 34372124 C G KIAA1161 Missense_Mutation p.R239P 0.23 tolerated(0.11) benign(0.066) TCGA-49-AARE-01 9 35092273 35092273 C A PIGO Missense_Mutation p.R537S 0.30 tolerated(0.59) benign(0.001) TCGA-49-AARE-01 9 36170827 36170827 G T CCIN Missense_Mutation p.G443V 0.39 deleterious(0.02) probably_damaging(1) TCGA-49-AARE-01 9 37541712 37541712 C A FBXO10 Missense_Mutation p.L18F 0.25 tolerated(0.07) probably_damaging(0.999) TCGA-49-AARE-01 9 43627839 43627839 C A SPATA31A6 Missense_Mutation p.W283L 0.54 deleterious(0) probably_damaging(0.992) TCGA-49-AARE-01 9 5029873 5029873 A T JAK2 Missense_Mutation p.E106V 0.33 deleterious(0.01) benign(0.332) TCGA-49-AARE-01 9 6620258 6620258 C G GLDC Silent p.S132S 0.21 TCGA-49-AARE-01 9 71437558 71437558 G A PIP5K1B Missense_Mutation p.A10T 0.19 tolerated_low_confidence(0.27) benign(0.021) TCGA-49-AARE-01 9 79322447 79322447 G T PRUNE2 Missense_Mutation p.H1581Q 0.22 tolerated(0.14) benign(0.005) TCGA-49-AARE-01 9 80851430 80851430 G T CEP78 Missense_Mutation p.W55L 0.29 deleterious(0.01) probably_damaging(0.994) TCGA-49-AARE-01 9 84606557 84606557 G T SPATA31D1 Missense_Mutation p.G391V 0.26 tolerated(0.2) possibly_damaging(0.661) TCGA-49-AARE-01 9 86506264 86506264 A C KIF27 Missense_Mutation p.F585L 0.35 tolerated(1) benign(0.002) TCGA-49-AARE-01 9 86955659 86955659 A T SLC28A3 5'Flank 0.38 TCGA-49-AARE-01 9 87635149 87635149 G T NTRK2 Missense_Mutation p.R734L 0.16 tolerated(0.07) probably_damaging(0.999) TCGA-49-AARE-01 9 95993260 95993260 G C WNK2 Missense_Mutation p.R315S 0.40 unknown(0) TCGA-49-AARE-01 9 97082551 97082551 G A NUTM2F Missense_Mutation p.S436L 0.29 tolerated(0.13) benign(0.005) TCGA-49-AARE-01 9 97843039 97843039 G T C9orf3 Nonsense_Mutation p.E766* 0.30 TCGA-49-AARE-01 9 98209553 98209553 C A PTCH1 Missense_Mutation p.G1329W 0.36 deleterious_low_confidence(0.04) possibly_damaging(0.715) TCGA-49-AARE-01 9 990446 990446 C T DMRT3 Missense_Mutation p.S287F 0.20 deleterious(0) probably_damaging(0.962) TCGA-49-AARE-01 9 99160577 99160577 C A ZNF367 Missense_Mutation p.R147M 0.14 deleterious(0) probably_damaging(0.974) TCGA-49-AARE-01 X 100276277 100276277 C A TRMT2B Missense_Mutation p.Q293H 0.22 deleterious(0.01) benign(0.293) TCGA-49-AARE-01 X 100486748 100486748 C G DRP2 Missense_Mutation p.P38A 0.14 tolerated_low_confidence(0.29) benign(0.001) TCGA-49-AARE-01 X 100542642 100542642 C A TAF7L Intron 0.50 TCGA-49-AARE-01 X 100611091 100611091 G T BTK Silent p.V505V 0.32 TCGA-49-AARE-01 X 100646470 100646470 G T RPL36A-HNRNPH2 Silent p.R20R 0.14 TCGA-49-AARE-01 X 10084510 10084510 A - WWC3 Frame_Shift_Del p.T343Pfs*3 0.24 TCGA-49-AARE-01 X 10180535 10180535 T C CLCN4 Missense_Mutation p.M473T 0.17 deleterious(0) possibly_damaging(0.635) TCGA-49-AARE-01 X 10180644 10180644 C A CLCN4 Missense_Mutation p.D509E 0.27 tolerated(0.25) benign(0.101) TCGA-49-AARE-01 X 102004178 102004178 G T BHLHB9 Missense_Mutation p.M85I 0.12 tolerated(0.22) benign(0) TCGA-49-AARE-01 X 102337280 102337280 C A NXF3 Missense_Mutation p.G265W 0.25 tolerated(0.27) benign(0.002) TCGA-49-AARE-01 X 103430772 103430772 G T FAM199X Missense_Mutation p.G148V 0.19 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-49-AARE-01 X 104961402 104961402 G C IL1RAPL2 Missense_Mutation p.S272T 0.32 tolerated(0.16) probably_damaging(0.969) TCGA-49-AARE-01 X 107224236 107224236 C T TEX13B 3'UTR 0.12 TCGA-49-AARE-01 X 107224775 107224775 G T TEX13B Silent p.P158P 0.10 TCGA-49-AARE-01 X 107422033 107422033 C A COL4A6 Missense_Mutation p.R800L 0.24 benign(0.281) TCGA-49-AARE-01 X 107447615 107447615 C T COL4A6 Missense_Mutation p.G240R 0.18 unknown(0) TCGA-49-AARE-01 X 107977556 107977556 C A IRS4 Silent p.V673V 0.27 TCGA-49-AARE-01 X 108636195 108636195 C G GUCY2F Missense_Mutation p.L838F 0.25 deleterious(0) probably_damaging(0.998) TCGA-49-AARE-01 X 108647644 108647644 C A GUCY2F Missense_Mutation p.G680W 0.27 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 X 108647645 108647645 A T GUCY2F Missense_Mutation p.D679E 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-49-AARE-01 X 108691312 108691312 G T GUCY2F Missense_Mutation p.H519N 0.32 tolerated(0.14) benign(0.073) TCGA-49-AARE-01 X 109694405 109694405 C T RGAG1 Missense_Mutation p.S187F 0.22 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 X 111002979 111002979 G A ALG13 Missense_Mutation p.D1056N 0.21 tolerated(0.06) probably_damaging(0.989) TCGA-49-AARE-01 X 112058627 112058627 C T AMOT Missense_Mutation p.E451K 0.15 unknown(0) TCGA-49-AARE-01 X 117043890 117043890 T A KLHL13 Missense_Mutation p.N250I 0.32 deleterious(0) probably_damaging(0.987) TCGA-49-AARE-01 X 117680081 117680081 T A DOCK11 Splice_Site p.X186_splice 0.27 TCGA-49-AARE-01 X 11780339 11780339 G C MSL3 Missense_Mutation p.D186H 0.27 tolerated(0.1) probably_damaging(0.933) TCGA-49-AARE-01 X 118220906 118220906 A G KIAA1210 Silent p.P1429P 0.23 TCGA-49-AARE-01 X 118694234 118694234 C A CXorf56 Missense_Mutation p.R80L 0.10 deleterious(0.01) benign(0.325) TCGA-49-AARE-01 X 118708888 118708888 A T UBE2A Silent p.G23G 0.07 TCGA-49-AARE-01 X 118759301 118759301 G T SEPT6 Intron 0.35 TCGA-49-AARE-01 X 119037528 119037528 A G AKAP14 Silent p.K80K 0.23 TCGA-49-AARE-01 X 119746122 119746122 C A MCTS1 3'UTR 0.25 TCGA-49-AARE-01 X 120008925 120008925 C G CT47B1 Silent p.A200A 0.24 TCGA-49-AARE-01 X 122772794 122772794 C T THOC2 Missense_Mutation p.V611I 0.25 tolerated(0.1) possibly_damaging(0.536) TCGA-49-AARE-01 X 122774471 122774471 C A THOC2 Missense_Mutation p.R555L 0.22 deleterious(0) probably_damaging(0.97) TCGA-49-AARE-01 X 123657461 123657461 G T TENM1 Missense_Mutation p.A929D 0.42 deleterious(0) benign(0.122) TCGA-49-AARE-01 X 125298689 125298689 C A DCAF12L2 Missense_Mutation p.G407C 0.14 deleterious(0) probably_damaging(0.99) TCGA-49-AARE-01 X 125299498 125299498 C A DCAF12L2 Missense_Mutation p.R137L 0.30 deleterious(0.04) benign(0.233) TCGA-49-AARE-01 X 125685871 125685871 C A DCAF12L1 Missense_Mutation p.V241L 0.31 tolerated(0.17) benign(0.006) TCGA-49-AARE-01 X 125686324 125686324 G T DCAF12L1 Missense_Mutation p.R90S 0.30 deleterious(0.02) benign(0.082) TCGA-49-AARE-01 X 127186093 127186093 G A ACTRT1 Silent p.P31P 0.28 TCGA-49-AARE-01 X 127186189 127186189 T A ACTRT1 5'UTR 0.21 TCGA-49-AARE-01 X 12736039 12736039 G T FRMPD4 Missense_Mutation p.A1032S 0.20 tolerated_low_confidence(0.36) benign(0.04) TCGA-49-AARE-01 X 12838885 12838885 C A PRPS2 Missense_Mutation p.P279Q 0.25 deleterious(0) probably_damaging(0.998) TCGA-49-AARE-01 X 12838887 12838887 C G PRPS2 Missense_Mutation p.Q280E 0.25 tolerated(0.26) possibly_damaging(0.506) TCGA-49-AARE-01 X 128642031 128642031 C A SMARCA1 Missense_Mutation p.V285F 0.12 deleterious(0) probably_damaging(0.934) TCGA-49-AARE-01 X 129148928 129148928 C A BCORL1 Missense_Mutation p.S727Y 0.32 probably_damaging(0.999) TCGA-49-AARE-01 X 129149180 129149180 C A BCORL1 Missense_Mutation p.A811E 0.34 possibly_damaging(0.649) TCGA-49-AARE-01 X 129201016 129201016 C A ELF4 Missense_Mutation p.G558W 0.30 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 X 129201352 129201352 T C ELF4 Missense_Mutation p.S446G 0.09 tolerated(0.24) benign(0.18) TCGA-49-AARE-01 X 130411849 130411849 C A IGSF1 Silent p.P772P 0.09 TCGA-49-AARE-01 X 130411943 130411943 G T IGSF1 Missense_Mutation p.T741K 0.27 tolerated(0.06) possibly_damaging(0.908) TCGA-49-AARE-01 X 131214239 131214239 A C FRMD7 Missense_Mutation p.L321V 0.16 tolerated(0.27) probably_damaging(0.997) TCGA-49-AARE-01 X 134421418 134421418 C A ZNF75D Missense_Mutation p.C395F 0.18 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 X 134987419 134987419 A T SAGE1 Missense_Mutation p.I108F 0.39 deleterious(0) possibly_damaging(0.475) TCGA-49-AARE-01 X 134987532 134987532 C A SAGE1 Silent p.S145S 0.21 TCGA-49-AARE-01 X 135761732 135761732 G T ARHGEF6 Missense_Mutation p.P598T 0.20 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 X 135770132 135770132 G C ARHGEF6 Missense_Mutation p.Q402E 0.24 tolerated(1) benign(0.001) TCGA-49-AARE-01 X 137821448 137821448 G T FGF13 Intron 0.38 TCGA-49-AARE-01 X 140994604 140994604 G T MAGEC1 Missense_Mutation p.G472C 0.27 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-49-AARE-01 X 140996222 140996222 G T MAGEC1 Missense_Mutation p.G1011V 0.24 deleterious(0) unknown(0) TCGA-49-AARE-01 X 140996685 140996685 C A MAGEC1 3'UTR 0.38 TCGA-49-AARE-01 X 142716360 142716360 G A SLITRK4 3'UTR 0.13 TCGA-49-AARE-01 X 142716564 142716564 G T SLITRK4 Missense_Mutation p.D787E 0.17 tolerated(0.52) benign(0.071) TCGA-49-AARE-01 X 144337502 144337502 G T SPANXN1 3'UTR 0.17 TCGA-49-AARE-01 X 144904120 144904120 C A SLITRK2 Silent p.P59P 0.31 TCGA-49-AARE-01 X 146271271 146271271 A T MIR513C RNA 0.16 TCGA-49-AARE-01 X 147743955 147743955 C A AFF2 Missense_Mutation p.S236Y 0.13 deleterious(0.01) possibly_damaging(0.635) TCGA-49-AARE-01 X 148038034 148038034 A T AFF2 Missense_Mutation p.H820L 0.16 tolerated(0.21) benign(0.023) TCGA-49-AARE-01 X 148062320 148062320 A T AFF2 Missense_Mutation p.K1208M 0.32 deleterious(0) probably_damaging(0.998) TCGA-49-AARE-01 X 148797630 148797630 G A MAGEA11 Missense_Mutation p.E162K 0.25 tolerated(0.19) benign(0.276) TCGA-49-AARE-01 X 149639039 149639039 C T MAMLD1 Silent p.A373A 0.20 TCGA-49-AARE-01 X 150912571 150912571 G - CNGA2 Frame_Shift_Del p.G533Afs*28 0.27 TCGA-49-AARE-01 X 151130894 151130894 C G GABRE Splice_Site p.X188_splice 0.26 TCGA-49-AARE-01 X 151424371 151424371 T A GABRA3 Missense_Mutation p.S144C 0.25 deleterious(0) probably_damaging(0.995) TCGA-49-AARE-01 X 151896258 151896258 G T MAGEA12 3'Flank 0.30 TCGA-49-AARE-01 X 152483041 152483041 T A MAGEA1 5'UTR 0.28 TCGA-49-AARE-01 X 152612643 152612643 C A ZNF275 Missense_Mutation p.A167D 0.42 tolerated(0.16) possibly_damaging(0.611) TCGA-49-AARE-01 X 153037030 153037030 G T PLXNB3 Missense_Mutation p.G836C 0.16 deleterious(0.01) probably_damaging(0.933) TCGA-49-AARE-01 X 153037068 153037068 G T PLXNB3 Silent p.P848P 0.41 TCGA-49-AARE-01 X 153247458 153247458 C A TMEM187 5'UTR 0.09 TCGA-49-AARE-01 X 153284914 153284914 T A IRAK1 Missense_Mutation p.Q91L 0.27 deleterious(0) probably_damaging(0.962) TCGA-49-AARE-01 X 153558153 153558153 C A TKTL1 3'UTR 0.36 TCGA-49-AARE-01 X 153588600 153588600 G A FLNA Missense_Mutation p.A1188V 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-49-AARE-01 X 153640489 153640489 C A TAZ Missense_Mutation p.P59Q 0.24 tolerated(0.19) benign(0.069) TCGA-49-AARE-01 X 153649074 153649074 T A TAZ Silent p.A259A 0.25 TCGA-49-AARE-01 X 153657424 153657424 T C ATP6AP1 Silent p.H64H 0.46 TCGA-49-AARE-01 X 153691825 153691825 C A PLXNA3 Missense_Mutation p.P470Q 0.27 tolerated(0.09) probably_damaging(0.998) TCGA-49-AARE-01 X 153762366 153762366 G A G6PD Silent p.N248N 0.09 TCGA-49-AARE-01 X 153764176 153764176 G T G6PD Silent p.R111R 0.21 TCGA-49-AARE-01 X 154290050 154290050 G T CMC4 3'UTR 0.33 TCGA-49-AARE-01 X 1546727 1546727 C A ASMTL Missense_Mutation p.G266V 0.32 tolerated(0.12) benign(0.009) TCGA-49-AARE-01 X 1712417 1712417 G A AKAP17A Missense_Mutation p.G21D 0.10 deleterious(0.01) probably_damaging(0.947) TCGA-49-AARE-01 X 18662583 18662583 C G RS1 Missense_Mutation p.W163C 0.29 deleterious(0) probably_damaging(0.997) TCGA-49-AARE-01 X 19613084 19613084 A T SH3KBP1 Missense_Mutation p.V347D 0.30 deleterious(0.04) benign(0.406) TCGA-49-AARE-01 X 2139127 2139127 C A DHRSX Missense_Mutation p.W316C 0.13 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 X 21581527 21581527 A T CNKSR2 Missense_Mutation p.Q522L 0.21 tolerated(0.19) benign(0.028) TCGA-49-AARE-01 X 22051121 22051121 C G PHEX 5'UTR 0.14 TCGA-49-AARE-01 X 22291392 22291392 G T ZNF645 Missense_Mutation p.R95L 0.13 deleterious(0.01) benign(0.084) TCGA-49-AARE-01 X 22291912 22291912 G T ZNF645 Silent p.A268A 0.19 TCGA-49-AARE-01 X 26213083 26213083 C A MAGEB6 Missense_Mutation p.R374S 0.30 deleterious(0.01) benign(0.033) TCGA-49-AARE-01 X 30254524 30254524 G T MAGEB3 Missense_Mutation p.E161D 0.32 deleterious(0.03) probably_damaging(0.914) TCGA-49-AARE-01 X 30260659 30260659 T A MAGEB4 Missense_Mutation p.L136Q 0.13 deleterious(0.01) possibly_damaging(0.903) TCGA-49-AARE-01 X 306303 306303 C A PPP2R3B Silent p.T328T 0.23 TCGA-49-AARE-01 X 31089563 31089563 G C FTHL17 Missense_Mutation p.L170V 0.35 deleterious(0.03) benign(0.067) TCGA-49-AARE-01 X 31165594 31165594 T C DMD Missense_Mutation p.E3532G 0.33 possibly_damaging(0.607) TCGA-49-AARE-01 X 3239034 3239034 G T MXRA5 Missense_Mutation p.D1564E 0.12 tolerated(0.19) benign(0.009) TCGA-49-AARE-01 X 3240909 3240909 C A MXRA5 Silent p.T939T 0.32 TCGA-49-AARE-01 X 32472850 32472850 C G DMD Missense_Mutation p.E1178Q 0.27 probably_damaging(0.979) TCGA-49-AARE-01 X 32536027 32536027 G A DMD Intron 0.16 TCGA-49-AARE-01 X 32663111 32663111 T A DMD Missense_Mutation p.E373D 0.23 benign(0.09) TCGA-49-AARE-01 X 32717343 32717343 C A DMD Missense_Mutation p.L239F 0.11 probably_damaging(0.943) TCGA-49-AARE-01 X 32862919 32862919 C A DMD Missense_Mutation p.R82L 0.28 benign(0.258) TCGA-49-AARE-01 X 33146343 33146343 G T DMD Intron 0.38 TCGA-49-AARE-01 X 34147969 34147969 G T FAM47A 3'UTR 0.21 TCGA-49-AARE-01 X 34148874 34148874 G T FAM47A Missense_Mutation p.P508T 0.23 deleterious(0.03) probably_damaging(0.991) TCGA-49-AARE-01 X 34148987 34148987 G T FAM47A Missense_Mutation p.P470H 0.19 tolerated(0.09) probably_damaging(0.996) TCGA-49-AARE-01 X 34149738 34149738 C A FAM47A Missense_Mutation p.V220L 0.24 tolerated(0.21) probably_damaging(0.927) TCGA-49-AARE-01 X 35966497 35966497 A T CXorf22 Missense_Mutation p.D195V 0.12 deleterious(0.01) benign(0.047) TCGA-49-AARE-01 X 35993994 35993994 G T CXorf22 Nonsense_Mutation p.G893* 0.15 TCGA-49-AARE-01 X 37985883 37985883 G T SYTL5 Missense_Mutation p.G720V 0.13 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 X 38150245 38150245 C T RPGR Silent p.K513K 0.23 TCGA-49-AARE-01 X 39932052 39932052 G T BCOR Missense_Mutation p.H849Q 0.37 deleterious_low_confidence(0.01) benign(0.082) TCGA-49-AARE-01 X 39937188 39937188 C A BCOR 5'UTR 0.28 TCGA-49-AARE-01 X 40457953 40457953 T C ATP6AP2 Silent p.S185S 0.14 TCGA-49-AARE-01 X 40982963 40982963 C T USP9X Missense_Mutation p.L28F 0.14 tolerated_low_confidence(0.72) benign(0.001) TCGA-49-AARE-01 X 41048605 41048605 G T USP9X Missense_Mutation p.C1285F 0.08 deleterious(0) probably_damaging(0.982) TCGA-49-AARE-01 X 44703772 44703772 G A DUSP21 Missense_Mutation p.A132T 0.07 deleterious(0) probably_damaging(0.99) TCGA-49-AARE-01 X 46332450 46332450 G T KRBOX4 3'UTR 0.33 TCGA-49-AARE-01 X 47444746 47444746 C A TIMP1 Intron 0.31 TCGA-49-AARE-01 X 47705656 47705656 C A ZNF81 5'UTR 0.50 TCGA-49-AARE-01 X 48403384 48403384 C T TBC1D25 Missense_Mutation p.R121C 0.16 deleterious(0) possibly_damaging(0.642) TCGA-49-AARE-01 X 48544140 48544140 G T WAS Silent p.L126L 0.40 TCGA-49-AARE-01 X 48650810 48650810 G A GATA1 Missense_Mutation p.A227T 0.35 deleterious(0) probably_damaging(0.997) TCGA-49-AARE-01 X 48673262 48673262 G T HDAC6 Missense_Mutation p.V341L 0.27 deleterious(0) probably_damaging(0.999) TCGA-49-AARE-01 X 48681454 48681454 T A HDAC6 Missense_Mutation p.V882D 0.29 tolerated(0.44) benign(0.001) TCGA-49-AARE-01 X 48759572 48759572 C T PQBP1 Missense_Mutation p.R119C 0.11 tolerated(0.11) possibly_damaging(0.735) TCGA-49-AARE-01 X 48776090 48776090 C A PIM2 Missense_Mutation p.G8W 0.26 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-49-AARE-01 X 48791779 48791779 G C OTUD5 Silent p.A344A 0.12 TCGA-49-AARE-01 X 49067892 49067892 C A CACNA1F Nonsense_Mutation p.G1395* 0.17 TCGA-49-AARE-01 X 49958929 49958929 G T AKAP4 Silent p.G145G 0.20 TCGA-49-AARE-01 X 49959050 49959050 G A AKAP4 Missense_Mutation p.S105F 0.19 tolerated(0.06) benign(0.037) TCGA-49-AARE-01 X 49959052 49959052 G T AKAP4 Silent p.P104P 0.15 TCGA-49-AARE-01 X 50094616 50094616 G T CCNB3 Nonsense_Mutation p.E1368* 0.29 TCGA-49-AARE-01 X 50213424 50213424 G A DGKK RNA 0.31 TCGA-49-AARE-01 X 50345674 50345674 G T SHROOM4 Missense_Mutation p.L1301I 0.14 tolerated(0.23) benign(0.205) TCGA-49-AARE-01 X 50377756 50377756 T C SHROOM4 Silent p.V439V 0.19 TCGA-49-AARE-01 X 51149925 51149925 G T CXorf67 Missense_Mutation p.Q19H 0.40 tolerated(0.07) possibly_damaging(0.46) TCGA-49-AARE-01 X 51150841 51150841 G T CXorf67 Missense_Mutation p.V325F 0.23 deleterious(0.04) benign(0.031) TCGA-49-AARE-01 X 53279570 53279570 A T IQSEC2 Missense_Mutation p.C730S 0.30 tolerated_low_confidence(1) benign(0.054) TCGA-49-AARE-01 X 54022206 54022206 C A PHF8 Missense_Mutation p.D451Y 0.23 deleterious(0) possibly_damaging(0.495) TCGA-49-AARE-01 X 54278048 54278048 C A WNK3 Missense_Mutation p.A814S 0.28 deleterious(0) probably_damaging(0.994) TCGA-49-AARE-01 X 54784279 54784279 G T ITIH6 Missense_Mutation p.S743Y 0.24 deleterious(0.01) benign(0.084) TCGA-49-AARE-01 X 54955475 54955475 C A TRO Missense_Mutation p.A773D 0.27 deleterious(0) unknown(0) TCGA-49-AARE-01 X 54956246 54956246 G T TRO Missense_Mutation p.G1030V 0.32 deleterious(0.03) possibly_damaging(0.667) TCGA-49-AARE-01 X 54959881 54959881 G T PFKFB1 Silent p.T457T 0.35 TCGA-49-AARE-01 X 55052281 55052281 G T ALAS2 Silent p.I51I 0.27 TCGA-49-AARE-01 X 55172496 55172496 G A FAM104B 3'UTR 0.33 TCGA-49-AARE-01 X 55478745 55478745 C G MAGEH1 5'UTR 0.25 TCGA-49-AARE-01 X 55650177 55650177 G C FOXR2 Missense_Mutation p.W11C 0.41 deleterious(0) probably_damaging(0.99) TCGA-49-AARE-01 X 56591168 56591168 G T UBQLN2 Missense_Mutation p.G288W 0.29 deleterious(0) probably_damaging(0.997) TCGA-49-AARE-01 X 57313307 57313307 C A FAAH2 Missense_Mutation p.L17I 0.18 tolerated(0.64) benign(0) TCGA-49-AARE-01 X 57619677 57619677 G C ZXDB Missense_Mutation p.G399A 0.18 deleterious(0.01) possibly_damaging(0.505) TCGA-49-AARE-01 X 57620393 57620393 G T ZXDB Missense_Mutation p.A638S 0.27 tolerated(0.35) benign(0.009) TCGA-49-AARE-01 X 5810826 5810826 G A NLGN4X 3'UTR 0.14 TCGA-49-AARE-01 X 63410433 63410433 C A AMER1 Missense_Mutation p.V912F 0.28 deleterious(0) benign(0.05) TCGA-49-AARE-01 X 65252550 65252550 C A VSIG4 Missense_Mutation p.G152C 0.19 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 X 65476078 65476078 G T HEPH Missense_Mutation p.W988C 0.30 deleterious(0) probably_damaging(0.987) TCGA-49-AARE-01 X 66765153 66765153 G C AR Silent p.L55L 0.27 TCGA-49-AARE-01 X 66931457 66931457 C T AR Missense_Mutation p.A700V 0.26 tolerated(0.21) benign(0.01) TCGA-49-AARE-01 X 67937615 67937615 C A STARD8 Silent p.R287R 0.23 TCGA-49-AARE-01 X 67942356 67942356 C A STARD8 Silent p.A889A 0.10 TCGA-49-AARE-01 X 68381246 68381246 C A PJA1 Silent p.P612P 0.12 TCGA-49-AARE-01 X 69454577 69454577 A T AWAT1 Missense_Mutation p.Q11L 0.13 deleterious(0) benign(0.101) TCGA-49-AARE-01 X 69508328 69508328 G T PDZD11 Silent p.T41T 0.13 TCGA-49-AARE-01 X 69670077 69670077 C A DLG3 Missense_Mutation p.S254R 0.24 deleterious(0.01) possibly_damaging(0.476) TCGA-49-AARE-01 X 70444246 70444246 G T GJB1 Missense_Mutation p.R230L 0.08 tolerated(0.28) benign(0) TCGA-49-AARE-01 X 70466536 70466536 G A ZMYM3 Missense_Mutation p.S774F 0.27 tolerated(0.2) benign(0.36) TCGA-49-AARE-01 X 71425117 71425117 G T ERCC6L Missense_Mutation p.A1167D 0.43 tolerated(0.59) benign(0.002) TCGA-49-AARE-01 X 71426680 71426680 T G ERCC6L Missense_Mutation p.H646P 0.34 deleterious(0) probably_damaging(0.97) TCGA-49-AARE-01 X 71427218 71427218 C A ERCC6L Missense_Mutation p.D467Y 0.23 deleterious(0.01) benign(0.017) TCGA-49-AARE-01 X 71876075 71876075 G T PHKA1 Nonsense_Mutation p.Y312* 0.08 TCGA-49-AARE-01 X 73064259 73064259 C G XIST RNA 0.27 TCGA-49-AARE-01 X 73960407 73960407 C A KIAA2022 Missense_Mutation p.D1329Y 0.13 deleterious(0) probably_damaging(0.996) TCGA-49-AARE-01 X 75648731 75648731 G C MAGEE1 Silent p.R136R 0.41 TCGA-49-AARE-01 X 75650804 75650804 A C MAGEE1 Silent p.V827V 0.28 TCGA-49-AARE-01 X 77225019 77225019 C T PGAM4 Silent p.K39K 0.26 TCGA-49-AARE-01 X 77380426 77380426 C T PGK1 Missense_Mutation p.A331V 0.25 deleterious(0) possibly_damaging(0.866) TCGA-49-AARE-01 X 78010469 78010469 G T LPAR4 Missense_Mutation p.D35Y 0.28 tolerated(0.25) probably_damaging(0.993) TCGA-49-AARE-01 X 78010874 78010874 G T LPAR4 Missense_Mutation p.G170C 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-49-AARE-01 X 78011309 78011309 C A LPAR4 Missense_Mutation p.L315I 0.17 deleterious(0) benign(0.084) TCGA-49-AARE-01 X 78216114 78216114 C T P2RY10 Nonsense_Mutation p.Q33* 0.41 TCGA-49-AARE-01 X 80001196 80001196 A C BRWD3 Missense_Mutation p.C155G 0.11 tolerated(0.42) benign(0.001) TCGA-49-AARE-01 X 82764187 82764187 C A POU3F4 Silent p.I285I 0.22 TCGA-49-AARE-01 X 82764364 82764364 G T POU3F4 Silent p.P344P 0.20 TCGA-49-AARE-01 X 85211384 85211384 C G CHM Splice_Site p.X314_splice 0.45 TCGA-49-AARE-01 X 86877396 86877396 C T KLHL4 Silent p.Y370Y 0.25 TCGA-49-AARE-01 X 89177431 89177431 G T TGIF2LX Missense_Mutation p.R116L 0.24 deleterious(0.03) benign(0.005) TCGA-49-AARE-01 X 91132514 91132514 C G PCDH11X Missense_Mutation p.D425E 0.30 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 X 91132725 91132725 G T PCDH11X Missense_Mutation p.G496W 0.26 deleterious(0) probably_damaging(1) TCGA-49-AARE-01 X 96136613 96136613 G C DIAPH2 Silent p.L161L 0.29 TCGA-49-AARE-01 X 96139898 96139898 C G RPA4 Missense_Mutation p.H197D 0.06 tolerated(0.64) benign(0.028) TCGA-49-AARE-01 X 96139916 96139916 G T RPA4 Missense_Mutation p.D203Y 0.12 deleterious(0.02) benign(0.269) TCGA-49-AARE-01 X 99891730 99891730 G A TSPAN6 5'UTR 0.29 TCGA-49-AARE-01 X 99942064 99942064 G C SYTL4 Missense_Mutation p.P395R 0.12 deleterious(0) probably_damaging(0.999) TCGA-49-AARN-01 10 105133333 105133333 G T TAF5 Missense_Mutation p.A260S 0.16 deleterious(0.02) probably_damaging(0.997) TCGA-49-AARN-01 10 115365531 115365531 A G NRAP Missense_Mutation p.I1302T 0.14 deleterious(0) benign(0.187) TCGA-49-AARN-01 10 118435928 118435928 T A HSPA12A Missense_Mutation p.S458C 0.09 deleterious(0.05) benign(0.012) TCGA-49-AARN-01 10 118687305 118687305 G A KIAA1598 Silent p.I370I 0.11 TCGA-49-AARN-01 10 135103479 135103479 A C TUBGCP2 Intron 0.10 TCGA-49-AARN-01 10 135369181 135369181 A T SYCE1 Silent p.A250A 0.23 TCGA-49-AARN-01 10 29812789 29812789 C A SVIL Silent p.S918S 0.14 TCGA-49-AARN-01 10 48387875 48387875 G T RBP3 Silent p.A1001A 0.10 TCGA-49-AARN-01 10 51224931 51224931 T C AGAP8 3'UTR 0.47 TCGA-49-AARN-01 10 68687489 68687489 G A LRRTM3 Missense_Mutation p.S272N 0.19 tolerated(0.51) benign(0.036) TCGA-49-AARN-01 10 70143589 70143589 C A RUFY2 Missense_Mutation p.R337I 0.13 deleterious(0.03) possibly_damaging(0.557) TCGA-49-AARN-01 10 73330597 73330597 C T CDH23 Silent p.I225I 0.25 TCGA-49-AARN-01 10 73501537 73501537 C A CDH23 Silent p.T1573T 0.11 TCGA-49-AARN-01 10 73544043 73544043 G A CDH23 Splice_Site p.X1795_splice 0.10 TCGA-49-AARN-01 10 75557788 75557788 G T ZSWIM8 Missense_Mutation p.W1304C 0.13 deleterious(0) probably_damaging(0.996) TCGA-49-AARN-01 10 76738995 76738995 A G KAT6B Missense_Mutation p.E710G 0.10 benign(0.01) TCGA-49-AARN-01 10 82036270 82036270 G T MAT1A Missense_Mutation p.N210K 0.07 tolerated(0.17) benign(0.104) TCGA-49-AARN-01 10 88930351 88930351 T G FAM35A Missense_Mutation p.F584V 0.08 deleterious(0.01) probably_damaging(0.973) TCGA-49-AARN-01 10 89472861 89472861 A C PAPSS2 Missense_Mutation p.S59R 0.04 deleterious(0) possibly_damaging(0.801) TCGA-49-AARN-01 10 91200916 91200916 A G SLC16A12 Missense_Mutation p.S133P 0.07 deleterious(0.04) probably_damaging(0.993) TCGA-49-AARN-01 10 93586797 93586797 G A TNKS2 Missense_Mutation p.M273I 0.17 tolerated(0.17) benign(0.023) TCGA-49-AARN-01 10 97920224 97920224 A T ZNF518A RNA 0.08 TCGA-49-AARN-01 11 102207707 102207707 A T BIRC3 Missense_Mutation p.K563N 0.11 deleterious(0) probably_damaging(0.936) TCGA-49-AARN-01 11 102573520 102573520 A C MMP27 Missense_Mutation p.F195V 0.07 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 11 102822861 102822861 A G MMP13 Missense_Mutation p.S227P 0.05 deleterious(0) probably_damaging(0.931) TCGA-49-AARN-01 11 107535994 107535994 G C ELMOD1 3'UTR 0.14 TCGA-49-AARN-01 11 109294719 109294719 G C C11orf87 Missense_Mutation p.R120S 0.22 tolerated(0.87) benign(0) TCGA-49-AARN-01 11 1156644 1156644 A G MUC5AC Missense_Mutation p.S221G 0.07 deleterious(0.04) benign(0.014) TCGA-49-AARN-01 11 119025610 119025610 T C ABCG4 Missense_Mutation p.F224S 0.17 deleterious(0) benign(0.403) TCGA-49-AARN-01 11 124135527 124135527 A T OR8G5 Missense_Mutation p.R269W 0.21 deleterious(0) probably_damaging(0.999) TCGA-49-AARN-01 11 124971201 124971201 T A TMEM218 Splice_Site p.X37_splice 0.16 TCGA-49-AARN-01 11 125831744 125831744 C A CDON Missense_Mutation p.G1169V 0.11 deleterious(0.03) benign(0.018) TCGA-49-AARN-01 11 17544334 17544334 C G USH1C Missense_Mutation p.R339P 0.34 deleterious(0) possibly_damaging(0.551) TCGA-49-AARN-01 11 18195648 18195648 A C MRGPRX4 Missense_Mutation p.Q282P 0.10 tolerated(0.2) benign(0.02) TCGA-49-AARN-01 11 18502135 18502135 C T TSG101 Missense_Mutation p.M377I 0.13 tolerated(0.18) benign(0.003) TCGA-49-AARN-01 11 18637302 18637302 G A SPTY2D1 Silent p.L173L 0.10 TCGA-49-AARN-01 11 4470855 4470855 T G OR52K2 Missense_Mutation p.F96V 0.11 deleterious(0.03) probably_damaging(0.998) TCGA-49-AARN-01 11 45671618 45671618 C A CHST1 Missense_Mutation p.G286C 0.13 deleterious(0) probably_damaging(0.999) TCGA-49-AARN-01 11 47193061 47193061 T G ARFGAP2 Missense_Mutation p.K286T 0.07 deleterious(0.01) possibly_damaging(0.883) TCGA-49-AARN-01 11 4824809 4824809 C A OR52R1 Missense_Mutation p.G268C 0.11 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 11 4870156 4870156 C A OR51S1 Missense_Mutation p.A95S 0.10 deleterious(0.04) possibly_damaging(0.676) TCGA-49-AARN-01 11 51515387 51515387 A G OR4C46 Missense_Mutation p.T36A 0.05 deleterious_low_confidence(0.02) benign(0.008) TCGA-49-AARN-01 11 5373117 5373117 C A OR51B6 Missense_Mutation p.P127H 0.19 deleterious(0) probably_damaging(0.995) TCGA-49-AARN-01 11 5444057 5444057 T G OR51Q1 Missense_Mutation p.I209M 0.11 tolerated(0.4) possibly_damaging(0.824) TCGA-49-AARN-01 11 55135604 55135604 C - OR4A15 Frame_Shift_Del p.L83Wfs*15 0.13 TCGA-49-AARN-01 11 55406451 55406451 G A OR4P4 Silent p.L206L 0.15 TCGA-49-AARN-01 11 55579269 55579269 C A OR5L1 Silent p.V109V 0.24 TCGA-49-AARN-01 11 55587864 55587864 T C OR5D18 Silent p.H253H 0.23 TCGA-49-AARN-01 11 56043663 56043663 C A OR5T1 Silent p.S183S 0.17 TCGA-49-AARN-01 11 56058326 56058326 G C OR8H1 Silent p.L71L 0.05 TCGA-49-AARN-01 11 57076161 57076161 T G TNKS1BP1 Missense_Mutation p.M1342L 0.06 tolerated(0.22) benign(0.032) TCGA-49-AARN-01 11 57472635 57472635 T G MED19 Missense_Mutation p.K95T 0.14 deleterious(0) possibly_damaging(0.588) TCGA-49-AARN-01 11 61178493 61178493 A C CPSF7 Missense_Mutation p.D489E 0.05 tolerated(0.06) probably_damaging(0.98) TCGA-49-AARN-01 11 62286676 62286676 G A AHNAK Silent p.L5071L 0.06 TCGA-49-AARN-01 11 62290073 62290073 T A AHNAK Missense_Mutation p.K3939M 0.07 probably_damaging(0.999) TCGA-49-AARN-01 11 6245253 6245253 C A FAM160A2 Missense_Mutation p.G122W 0.16 deleterious(0.01) possibly_damaging(0.871) TCGA-49-AARN-01 11 63521136 63521136 G A RTN3 Missense_Mutation p.E984K 0.06 deleterious(0.04) benign(0.367) TCGA-49-AARN-01 11 65123329 65123329 A C TIGD3 Missense_Mutation p.K17T 0.12 deleterious(0) possibly_damaging(0.728) TCGA-49-AARN-01 11 65650824 65650824 C T CTSW Nonsense_Mutation p.Q317* 0.05 TCGA-49-AARN-01 11 66039584 66039584 C T RAB1B Intron 0.06 TCGA-49-AARN-01 11 66191860 66191860 A G NPAS4 Missense_Mutation p.Q500R 0.07 tolerated_low_confidence(0.15) benign(0.007) TCGA-49-AARN-01 11 6623232 6623232 C A RRP8 Missense_Mutation p.D105Y 0.16 deleterious_low_confidence(0) benign(0.004) TCGA-49-AARN-01 11 66358981 66358981 G C CCDC87 Silent p.V502V 0.05 TCGA-49-AARN-01 11 6703526 6703526 C A MRPL17 Silent p.R117R 0.18 TCGA-49-AARN-01 11 67269422 67269422 C A PITPNM1 Missense_Mutation p.G184V 0.13 tolerated(0.56) possibly_damaging(0.899) TCGA-49-AARN-01 11 67269423 67269423 C G PITPNM1 Missense_Mutation p.G184R 0.11 tolerated(0.5) benign(0.062) TCGA-49-AARN-01 11 67412852 67412852 C A ACY3 Splice_Site p.X145_splice 0.38 TCGA-49-AARN-01 11 68747524 68747524 G A MRGPRD Missense_Mutation p.T311M 0.28 tolerated(0.13) possibly_damaging(0.505) TCGA-49-AARN-01 11 73714899 73714899 T C UCP3 Missense_Mutation p.Q266R 0.27 tolerated(0.09) benign(0.005) TCGA-49-AARN-01 11 77383224 77383224 C T RSF1 Missense_Mutation p.R1205K 0.26 deleterious(0) probably_damaging(0.98) TCGA-49-AARN-01 11 78381152 78381152 G A TENM4 Missense_Mutation p.R2080C 0.10 deleterious(0) probably_damaging(0.994) TCGA-49-AARN-01 11 82924011 82924011 G T ANKRD42 Intron 0.14 TCGA-49-AARN-01 11 82924012 82924012 C G ANKRD42 Intron 0.14 TCGA-49-AARN-01 11 8496602 8496602 C A STK33 5'UTR 0.33 TCGA-49-AARN-01 11 88059545 88059545 T A CTSC Intron 0.23 TCGA-49-AARN-01 11 88911321 88911321 C A TYR Missense_Mutation p.P67H 0.16 deleterious(0.02) probably_damaging(0.933) TCGA-49-AARN-01 11 9042592 9042592 T A SCUBE2 Nonstop_Mutation p.*972Cext*40 0.09 TCGA-49-AARN-01 11 92087470 92087470 C A FAT3 Missense_Mutation p.S731Y 0.06 possibly_damaging(0.811) TCGA-49-AARN-01 11 92577448 92577448 C T FAT3 Nonsense_Mutation p.Q3639* 0.23 TCGA-49-AARN-01 11 92592368 92592368 C T FAT3 Silent p.I3846I 0.10 TCGA-49-AARN-01 11 93529601 93529601 C - MED17 Frame_Shift_Del p.H347Ifs*25 0.18 TCGA-49-AARN-01 11 9879859 9879859 T A SBF2 Missense_Mutation p.T672S 0.09 tolerated(0.69) benign(0.05) TCGA-49-AARN-01 12 100656177 100656177 C T DEPDC4 Missense_Mutation p.E189K 0.12 tolerated(0.27) benign(0.005) TCGA-49-AARN-01 12 101790353 101790353 T G ARL1 Missense_Mutation p.E113D 0.09 tolerated(0.09) probably_damaging(0.972) TCGA-49-AARN-01 12 104396927 104396927 A G GLT8D2 Silent p.T90T 0.19 TCGA-49-AARN-01 12 108145578 108145578 T A PRDM4 Missense_Mutation p.D247V 0.13 deleterious_low_confidence(0) possibly_damaging(0.617) TCGA-49-AARN-01 12 110181921 110181921 G C FAM222A 5'UTR 0.35 TCGA-49-AARN-01 12 110897561 110897561 A C GPN3 Missense_Mutation p.F127L 0.12 tolerated(1) benign(0.003) TCGA-49-AARN-01 12 118650735 118650735 G A TAOK3 Missense_Mutation p.S268L 0.13 deleterious(0.01) probably_damaging(0.986) TCGA-49-AARN-01 12 124305235 124305235 C A DNAH10 Missense_Mutation p.P1252Q 0.21 possibly_damaging(0.692) TCGA-49-AARN-01 12 13716299 13716299 C T GRIN2B Silent p.Q1291Q 0.08 TCGA-49-AARN-01 12 20801664 20801664 G C PDE3A Missense_Mutation p.A870P 0.18 deleterious(0) probably_damaging(0.996) TCGA-49-AARN-01 12 2224641 2224641 C A CACNA1C Missense_Mutation p.P101T 0.34 deleterious(0.02) benign(0.33) TCGA-49-AARN-01 12 26592243 26592243 G A ITPR2 Missense_Mutation p.H2154Y 0.29 deleterious(0.03) benign(0.001) TCGA-49-AARN-01 12 26592244 26592244 C A ITPR2 Silent p.R2153R 0.29 TCGA-49-AARN-01 12 27554579 27554579 T G ARNTL2 Missense_Mutation p.Y464D 0.09 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 12 27554604 27554604 T G ARNTL2 Missense_Mutation p.V472G 0.10 deleterious(0) probably_damaging(0.999) TCGA-49-AARN-01 12 41966505 41966505 G T PDZRN4 Nonsense_Mutation p.E642* 0.17 TCGA-49-AARN-01 12 4398055 4398055 G A CCND2 Missense_Mutation p.V207M 0.29 tolerated(0.1) possibly_damaging(0.471) TCGA-49-AARN-01 12 48132483 48132483 A G RAPGEF3 Missense_Mutation p.F839S 0.08 deleterious(0) probably_damaging(0.983) TCGA-49-AARN-01 12 48596226 48596226 G T OR10AD1 Missense_Mutation p.P284T 0.23 deleterious(0.01) probably_damaging(0.957) TCGA-49-AARN-01 12 48596227 48596227 G T OR10AD1 Silent p.T283T 0.24 TCGA-49-AARN-01 12 48882712 48882712 G T C12orf54 Silent p.L47L 0.17 TCGA-49-AARN-01 12 49663280 49663280 T C TUBA1C Silent p.A12A 0.06 TCGA-49-AARN-01 12 49937734 49937734 A C KCNH3 Missense_Mutation p.K287T 0.09 tolerated(0.19) possibly_damaging(0.549) TCGA-49-AARN-01 12 50571478 50571478 T G LIMA1 Missense_Mutation p.K551T 0.20 deleterious(0.05) probably_damaging(0.937) TCGA-49-AARN-01 12 51864293 51864293 T G SLC4A8 Missense_Mutation p.L548V 0.14 tolerated(0.18) probably_damaging(0.999) TCGA-49-AARN-01 12 53676967 53676967 T G ESPL1 Missense_Mutation p.I949S 0.10 deleterious(0) probably_damaging(0.99) TCGA-49-AARN-01 12 55886175 55886175 C T OR6C68 Missense_Mutation p.T5I 0.14 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-49-AARN-01 12 56347585 56347585 A G DGKA 3'UTR 0.16 TCGA-49-AARN-01 12 57389974 57389974 C T GPR182 Silent p.F327F 0.09 TCGA-49-AARN-01 12 57569701 57569701 A G LRP1 Missense_Mutation p.K1268R 0.04 benign(0.009) TCGA-49-AARN-01 12 59282122 59282122 C A LRIG3 Missense_Mutation p.K312N 0.29 tolerated(0.07) possibly_damaging(0.72) TCGA-49-AARN-01 12 60098571 60098571 A G SLC16A7 5'UTR 0.20 TCGA-49-AARN-01 12 63543932 63543932 C G AVPR1A Missense_Mutation p.V229L 0.05 deleterious(0) benign(0.123) TCGA-49-AARN-01 12 64057608 64057608 A C DPY19L2 Missense_Mutation p.L127R 0.12 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 12 64664370 64664370 C A C12orf56 Missense_Mutation p.R410L 0.38 deleterious(0.01) benign(0.002) TCGA-49-AARN-01 12 662484 662484 A C B4GALNT3 Missense_Mutation p.Q465H 0.07 tolerated(0.09) benign(0.372) TCGA-49-AARN-01 12 6882411 6882411 G T LAG3 Missense_Mutation p.A38S 0.22 tolerated(0.34) possibly_damaging(0.631) TCGA-49-AARN-01 12 69233286 69233288 ATG - MDM2 In_Frame_Del p.D386del 0.34 TCGA-49-AARN-01 12 6952813 6952813 C A GNB3 Missense_Mutation p.R150S 0.29 tolerated(0.22) possibly_damaging(0.802) TCGA-49-AARN-01 12 69968466 69968466 T C FRS2 Missense_Mutation p.F420L 0.14 deleterious(0) probably_damaging(0.994) TCGA-49-AARN-01 12 71056345 71056345 C T PTPRR Missense_Mutation p.G513E 0.07 tolerated(0.06) probably_damaging(0.998) TCGA-49-AARN-01 12 78593143 78593143 C A NAV3 Missense_Mutation p.P2161T 0.15 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 12 9885856 9885856 A C CLECL1 Missense_Mutation p.V2G 0.10 tolerated_low_confidence(0.33) benign(0.031) TCGA-49-AARN-01 12 9885858 9885858 C A CLECL1 Translation_Start_Site p.M1? 0.11 deleterious_low_confidence(0) benign(0.216) TCGA-49-AARN-01 13 111944506 111944506 G T ARHGEF7 Missense_Mutation p.D747Y 0.20 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-49-AARN-01 13 27643458 27643458 C T USP12 Missense_Mutation p.E359K 0.09 deleterious(0.04) possibly_damaging(0.67) TCGA-49-AARN-01 13 29608195 29608195 A T MTUS2 Silent p.S803S 0.28 TCGA-49-AARN-01 13 41650184 41650184 C T WBP4 Silent p.S189S 0.07 TCGA-49-AARN-01 13 42442483 42442483 T G VWA8 Missense_Mutation p.K404T 0.07 deleterious(0.03) benign(0.007) TCGA-49-AARN-01 13 48955394 48955394 C T RB1 Nonsense_Mutation p.Q504* 0.07 TCGA-49-AARN-01 13 48985612 48985612 G A LPAR6 Silent p.F316F 0.07 TCGA-49-AARN-01 13 49841839 49841839 A C CDADC1 Missense_Mutation p.K215T 0.10 tolerated(0.05) benign(0.051) TCGA-49-AARN-01 13 52718962 52718962 G - NEK3 Frame_Shift_Del p.P223Rfs*11 0.43 TCGA-49-AARN-01 13 70681646 70681646 T A KLHL1 Missense_Mutation p.R62S 0.27 tolerated_low_confidence(0.05) benign(0.146) TCGA-49-AARN-01 13 79177444 79177444 G C POU4F1 Missense_Mutation p.S6R 0.15 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-49-AARN-01 13 92345711 92345711 G T GPC5 Missense_Mutation p.R199L 0.21 deleterious(0) probably_damaging(0.922) TCGA-49-AARN-01 14 100165839 100165839 A G CYP46A1 Missense_Mutation p.K107E 0.05 tolerated(0.38) benign(0.034) TCGA-49-AARN-01 14 101402857 101402857 T A SNORD113-4 RNA 0.17 TCGA-49-AARN-01 14 101512828 101512828 T G MIR487B RNA 0.06 TCGA-49-AARN-01 14 102499429 102499429 A C DYNC1H1 Missense_Mutation p.K3369N 0.07 benign(0.005) TCGA-49-AARN-01 14 103180781 103180781 C A RCOR1 Missense_Mutation p.P294T 0.20 tolerated(0.12) benign(0.026) TCGA-49-AARN-01 14 103371856 103371856 A T TRAF3 Missense_Mutation p.E481V 0.07 deleterious(0) probably_damaging(0.996) TCGA-49-AARN-01 14 103434850 103434850 G A CDC42BPB Silent p.I733I 0.12 TCGA-49-AARN-01 14 104194169 104194169 C T ZFYVE21 Silent p.P92P 0.18 TCGA-49-AARN-01 14 105407644 105407644 T G AHNAK2 Missense_Mutation p.K4715T 0.09 possibly_damaging(0.583) TCGA-49-AARN-01 14 105413321 105413321 A C AHNAK2 Missense_Mutation p.F2823V 0.05 probably_damaging(0.995) TCGA-49-AARN-01 14 20248931 20248931 G T OR4M1 Missense_Mutation p.M150I 0.18 tolerated(0.2) benign(0) TCGA-49-AARN-01 14 20295709 20295709 C A OR4N2 Missense_Mutation p.F34L 0.26 tolerated(0.17) probably_damaging(0.998) TCGA-49-AARN-01 14 20666467 20666467 C A OR11G2 Missense_Mutation p.P325T 0.24 deleterious(0) probably_damaging(0.931) TCGA-49-AARN-01 14 20859257 20859257 T C TEP1 Splice_Site p.X700_splice 0.19 TCGA-49-AARN-01 14 20978641 20978641 A C RNASE10 Missense_Mutation p.N4T 0.10 tolerated_low_confidence(1) benign(0.001) TCGA-49-AARN-01 14 21771602 21771602 G T RPGRIP1 Missense_Mutation p.V234L 0.23 deleterious(0.05) benign(0.02) TCGA-49-AARN-01 14 22466305 22466305 G A TRAV17 Missense_Mutation p.G79R 0.21 deleterious(0) probably_damaging(0.996) TCGA-49-AARN-01 14 22934759 22934759 T G TRDC 3'UTR 0.08 TCGA-49-AARN-01 14 23374132 23374132 G A RBM23 Silent p.F272F 0.05 TCGA-49-AARN-01 14 23847601 23847601 C T CMTM5 Missense_Mutation p.S57F 0.09 deleterious(0) probably_damaging(0.999) TCGA-49-AARN-01 14 23855640 23855640 T C MYH6 Missense_Mutation p.R1615G 0.18 deleterious(0.01) probably_damaging(0.967) TCGA-49-AARN-01 14 23859380 23859380 G T MYH6 Silent p.G1206G 0.25 TCGA-49-AARN-01 14 24784999 24784999 C G LTB4R Missense_Mutation p.Q48E 0.11 deleterious(0.01) benign(0.077) TCGA-49-AARN-01 14 29237347 29237347 C A FOXG1 Missense_Mutation p.R288S 0.20 deleterious(0.01) probably_damaging(0.983) TCGA-49-AARN-01 14 35497339 35497339 T G SRP54 Missense_Mutation p.L458W 0.08 deleterious(0.01) possibly_damaging(0.815) TCGA-49-AARN-01 14 52477622 52477622 G T NID2 Missense_Mutation p.R1232S 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-49-AARN-01 14 54989197 54989197 C T CGRRF1 Silent p.L44L 0.09 TCGA-49-AARN-01 14 64632053 64632053 A C SYNE2 Missense_Mutation p.K5510N 0.06 possibly_damaging(0.795) TCGA-49-AARN-01 14 64634316 64634316 A G SYNE2 Missense_Mutation p.N5622D 0.13 benign(0.003) TCGA-49-AARN-01 14 65197868 65197868 A G PLEKHG3 Missense_Mutation p.E221G 0.08 deleterious(0) probably_damaging(0.999) TCGA-49-AARN-01 14 70924791 70924791 A C ADAM21 Missense_Mutation p.N192T 0.07 deleterious(0.05) benign(0.094) TCGA-49-AARN-01 14 70925035 70925035 A C ADAM21 Missense_Mutation p.E273D 0.18 tolerated(0.81) benign(0.006) TCGA-49-AARN-01 14 74420220 74420220 T G COQ6 Silent p.T82T 0.15 TCGA-49-AARN-01 14 76149953 76149953 T G TTLL5 Missense_Mutation p.L109V 0.10 tolerated(0.31) benign(0.061) TCGA-49-AARN-01 14 88477813 88477813 C A GPR65 Missense_Mutation p.Q208K 0.23 tolerated(0.33) benign(0.015) TCGA-49-AARN-01 14 91976004 91976004 G A SMEK1 5'UTR 0.30 TCGA-49-AARN-01 14 92249481 92249481 T G TC2N Missense_Mutation p.K479T 0.07 deleterious(0) possibly_damaging(0.703) TCGA-49-AARN-01 14 92484086 92484086 T C TRIP11 Silent p.K199K 0.09 TCGA-49-AARN-01 14 93277914 93277914 C T GOLGA5 Missense_Mutation p.L379F 0.24 tolerated(0.07) benign(0.403) TCGA-49-AARN-01 14 94526901 94526901 A G DDX24 Missense_Mutation p.S486P 0.09 deleterious(0.04) possibly_damaging(0.807) TCGA-49-AARN-01 15 22369283 22369283 C A OR4M2 Missense_Mutation p.N236K 0.04 tolerated(0.19) benign(0.006) TCGA-49-AARN-01 15 23108855 23108855 T G RP11-566K19.6 RNA 0.12 TCGA-49-AARN-01 15 23890418 23890418 G T MAGEL2 Silent p.P221P 0.23 TCGA-49-AARN-01 15 33938576 33938576 G T RYR3 Missense_Mutation p.D1264Y 0.21 possibly_damaging(0.759) TCGA-49-AARN-01 15 34649838 34649838 C A NUTM1 3'UTR 0.29 TCGA-49-AARN-01 15 48060944 48060944 G A SEMA6D Silent p.K644K 0.10 TCGA-49-AARN-01 15 52521360 52521360 C A MYO5C Silent p.A1059A 0.08 TCGA-49-AARN-01 15 56959051 56959051 G A ZNF280D Missense_Mutation p.S560F 0.07 tolerated(0.23) benign(0.003) TCGA-49-AARN-01 15 59376336 59376336 A G RNF111 Missense_Mutation p.H778R 0.10 deleterious(0) probably_damaging(0.995) TCGA-49-AARN-01 15 59500076 59500076 T G LDHAL6B Missense_Mutation p.L313V 0.07 tolerated(0.06) benign(0.2) TCGA-49-AARN-01 15 60770156 60770156 T A NARG2 Silent p.I7I 0.12 TCGA-49-AARN-01 15 63932447 63932447 T G HERC1 Missense_Mutation p.K3935N 0.07 probably_damaging(0.996) TCGA-49-AARN-01 15 65883948 65883948 C T VWA9 Missense_Mutation p.G313S 0.30 deleterious(0.02) probably_damaging(0.981) TCGA-49-AARN-01 15 66813504 66813504 G A ZWILCH Silent p.E236E 0.04 TCGA-49-AARN-01 15 72495482 72495482 T G PKM Missense_Mutation p.E396D 0.12 tolerated(0.37) benign(0.006) TCGA-49-AARN-01 15 75687201 75687201 C T SIN3A Silent p.L699L 0.07 TCGA-49-AARN-01 15 77473509 77473509 C T PEAK1 Missense_Mutation p.E254K 0.07 deleterious(0) probably_damaging(0.997) TCGA-49-AARN-01 15 90904222 90904222 A T ZNF774 Missense_Mutation p.S387C 0.07 deleterious(0.02) benign(0.434) TCGA-49-AARN-01 15 91025321 91025321 G T IQGAP1 Silent p.V1153V 0.08 TCGA-49-AARN-01 15 93489369 93489369 G T CHD2 Nonsense_Mutation p.G434* 0.10 TCGA-49-AARN-01 16 12009922 12009922 C T GSPT1 5'Flank 0.17 TCGA-49-AARN-01 16 15112706 15112706 G T PDXDC1 Missense_Mutation p.A325S 0.10 tolerated(0.12) benign(0.164) TCGA-49-AARN-01 16 18879867 18879867 T A SMG1 Missense_Mutation p.N1003I 0.27 tolerated(0.5) possibly_damaging(0.543) TCGA-49-AARN-01 16 21123091 21123091 A C DNAH3 Missense_Mutation p.I652S 0.09 deleterious(0.01) probably_damaging(0.91) TCGA-49-AARN-01 16 2140354 2140354 C T PKD1 Missense_Mutation p.D4126N 0.09 probably_damaging(1) TCGA-49-AARN-01 16 2821338 2821338 A G SRRM2 3'UTR 0.20 TCGA-49-AARN-01 16 31336681 31336681 T G ITGAM Missense_Mutation p.F822V 0.07 tolerated(0.09) benign(0.05) TCGA-49-AARN-01 16 338111 338111 C A AXIN1 3'UTR 0.18 TCGA-49-AARN-01 16 46782007 46782007 G T MYLK3 Missense_Mutation p.N33K 0.15 deleterious(0) possibly_damaging(0.825) TCGA-49-AARN-01 16 48134829 48134829 G A ABCC12 Silent p.L998L 0.19 TCGA-49-AARN-01 16 48201054 48201054 C T ABCC11 3'UTR 0.19 TCGA-49-AARN-01 16 49671514 49671514 A C ZNF423 Missense_Mutation p.F517V 0.08 deleterious(0.01) benign(0.444) TCGA-49-AARN-01 16 51174404 51174404 G T SALL1 Missense_Mutation p.P577T 0.42 tolerated(0.35) benign(0.165) TCGA-49-AARN-01 16 51175593 51175593 C T SALL1 Silent p.G180G 0.23 TCGA-49-AARN-01 16 57067576 57067576 G T NLRC5 Silent p.T846T 0.12 TCGA-49-AARN-01 16 57736038 57736038 A G CCDC135 Missense_Mutation p.K232R 0.11 tolerated(0.17) benign(0.008) TCGA-49-AARN-01 16 58538163 58538163 C - NDRG4 Frame_Shift_Del p.S130Cfs*31 0.20 TCGA-49-AARN-01 16 67291324 67291324 A G SLC9A5 Missense_Mutation p.E471G 0.08 deleterious(0.01) probably_damaging(0.996) TCGA-49-AARN-01 16 67516688 67516688 A C AGRP Missense_Mutation p.S84A 0.08 deleterious(0.05) benign(0.007) TCGA-49-AARN-01 16 70349945 70349945 A T DDX19B Missense_Mutation p.E78D 0.04 tolerated(0.11) benign(0.008) TCGA-49-AARN-01 16 71101226 71101226 C A HYDIN Missense_Mutation p.G681V 0.41 probably_damaging(0.998) TCGA-49-AARN-01 16 71483783 71483783 T A ZNF23 Missense_Mutation p.I49F 0.10 tolerated(0.72) benign(0.003) TCGA-49-AARN-01 16 74908274 74908274 A T WDR59 Missense_Mutation p.F920I 0.10 tolerated(0.15) benign(0.022) TCGA-49-AARN-01 16 76495951 76495951 C A CNTNAP4 Missense_Mutation p.P405T 0.22 tolerated(0.35) benign(0.102) TCGA-49-AARN-01 16 81301529 81301529 G A BCMO1 Silent p.G212G 0.17 TCGA-49-AARN-01 16 88061144 88061144 G A BANP Silent p.Q309Q 0.08 TCGA-49-AARN-01 16 90095586 90095586 G T C16orf3 Silent p.P55P 0.36 TCGA-49-AARN-01 16 9934906 9934906 C T GRIN2A Missense_Mutation p.D462N 0.18 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 17 10303745 10303745 C A MYH8 Missense_Mutation p.D1233Y 0.25 deleterious(0) probably_damaging(0.971) TCGA-49-AARN-01 17 17150853 17150853 C T COPS3 Missense_Mutation p.D387N 0.09 tolerated(0.37) benign(0.003) TCGA-49-AARN-01 17 19285129 19285129 C T MAPK7 Missense_Mutation p.R505W 0.33 deleterious(0) unknown(0) TCGA-49-AARN-01 17 19643703 19643703 C T ALDH3A1 Missense_Mutation p.E299K 0.10 tolerated(0.37) benign(0.003) TCGA-49-AARN-01 17 27016436 27016436 A G SUPT6H Missense_Mutation p.R1067G 0.09 deleterious(0) possibly_damaging(0.852) TCGA-49-AARN-01 17 27185753 27185753 G C ERAL1 Missense_Mutation p.V291L 0.16 tolerated(0.72) benign(0.015) TCGA-49-AARN-01 17 33679318 33679318 C A SLFN11 3'UTR 0.19 TCGA-49-AARN-01 17 33749657 33749657 T A SLFN12 Missense_Mutation p.I131L 0.13 tolerated(0.41) benign(0.01) TCGA-49-AARN-01 17 3470266 3470266 C A SHPK Missense_Mutation p.W788L 0.42 deleterious(0.02) benign(0.018) TCGA-49-AARN-01 17 35564637 35564637 G A ACACA Missense_Mutation p.S1262L 0.09 tolerated(0.12) benign(0.167) TCGA-49-AARN-01 17 3567993 3567993 A G TAX1BP3 Missense_Mutation p.S47P 0.13 tolerated(0.12) possibly_damaging(0.787) TCGA-49-AARN-01 17 37657640 37657640 A C CDK12 Missense_Mutation p.K853Q 0.07 probably_damaging(0.999) TCGA-49-AARN-01 17 38991470 38991470 A G TMEM99 Silent p.L234L 0.23 TCGA-49-AARN-01 17 39959164 39959164 C T LEPREL4 3'UTR 0.10 TCGA-49-AARN-01 17 40001555 40001555 T A KLHL10 Missense_Mutation p.L288M 0.08 deleterious(0.04) possibly_damaging(0.564) TCGA-49-AARN-01 17 43322464 43322464 A T FMNL1 Missense_Mutation p.K906M 0.09 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 17 43923925 43923925 C A SPPL2C Silent p.G551G 0.14 TCGA-49-AARN-01 17 44039781 44039781 G - MAPT Frame_Shift_Del p.G28Afs*16 0.30 TCGA-49-AARN-01 17 45679050 45679050 T C NPEPPS Silent p.I559I 0.08 TCGA-49-AARN-01 17 46620371 46620371 T G HOXB2 3'UTR 0.08 TCGA-49-AARN-01 17 46675140 46675140 T A HOXB6 Missense_Mutation p.T125S 0.29 tolerated(0.62) benign(0.04) TCGA-49-AARN-01 17 48166487 48166487 A G ITGA3 Missense_Mutation p.K1020R 0.05 tolerated(0.42) benign(0.015) TCGA-49-AARN-01 17 48191595 48191595 T A SAMD14 Nonsense_Mutation p.K328* 0.11 TCGA-49-AARN-01 17 48678465 48678465 T C CACNA1G Missense_Mutation p.V1282A 0.08 deleterious(0) probably_damaging(0.976) TCGA-49-AARN-01 17 5012775 5012775 A G ZNF232 Missense_Mutation p.W138R 0.05 tolerated(0.06) possibly_damaging(0.781) TCGA-49-AARN-01 17 56247592 56247592 C A OR4D2 Silent p.T192T 0.30 TCGA-49-AARN-01 17 56602501 56602501 C T SEPT4 Silent p.V215V 0.06 TCGA-49-AARN-01 17 56694929 56694929 A G TEX14 Silent p.A202A 0.07 TCGA-49-AARN-01 17 57290496 57290496 T C SMG8 Missense_Mutation p.L771P 0.18 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 17 61473197 61473197 T G TANC2 Missense_Mutation p.W975G 0.11 deleterious(0) probably_damaging(0.999) TCGA-49-AARN-01 17 61560485 61560485 A G ACE Missense_Mutation p.S480G 0.06 deleterious(0.05) possibly_damaging(0.763) TCGA-49-AARN-01 17 62024518 62024518 T C SCN4A Missense_Mutation p.I1110V 0.21 tolerated(1) benign(0.06) TCGA-49-AARN-01 17 65353637 65353637 T A PSMD12 Missense_Mutation p.T56S 0.24 tolerated(0.11) benign(0.24) TCGA-49-AARN-01 17 65574312 65574312 T CA PITPNC1 Frame_Shift_Ins p.L102Pfs*13 0.25 TCGA-49-AARN-01 17 6683325 6683325 G T FBXO39 Missense_Mutation p.W46C 0.22 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 17 7227721 7227721 C A NEURL4 Missense_Mutation p.R631L 0.30 deleterious(0) possibly_damaging(0.903) TCGA-49-AARN-01 17 73658698 73658698 T G RECQL5 Missense_Mutation p.K211T 0.04 tolerated(0.17) benign(0.004) TCGA-49-AARN-01 17 74288010 74288010 T C QRICH2 Missense_Mutation p.Q767R 0.07 tolerated(0.15) benign(0.033) TCGA-49-AARN-01 17 74326137 74326137 C T PRPSAP1 Missense_Mutation p.D208N 0.09 tolerated(0.06) benign(0.008) TCGA-49-AARN-01 17 75471954 75471954 C T SEPT9 Intron 0.06 TCGA-49-AARN-01 17 7577570 7577570 C T TP53 Missense_Mutation p.M237I 0.26 deleterious(0) probably_damaging(0.997) TCGA-49-AARN-01 17 77043789 77043789 C T C1QTNF1 Silent p.P155P 0.32 TCGA-49-AARN-01 18 10691284 10691284 G T PIEZO2 Silent p.R2317R 0.41 TCGA-49-AARN-01 18 12506544 12506544 G A SPIRE1 Nonsense_Mutation p.Q302* 0.06 TCGA-49-AARN-01 18 20889705 20889705 T A TMEM241 Missense_Mutation p.I257F 0.09 tolerated(0.21) benign(0.146) TCGA-49-AARN-01 18 2539024 2539024 A C METTL4 Missense_Mutation p.F465C 0.06 deleterious(0) probably_damaging(0.977) TCGA-49-AARN-01 18 28993209 28993209 T A DSG4 Missense_Mutation p.F944Y 0.05 deleterious(0.01) possibly_damaging(0.519) TCGA-49-AARN-01 18 31323987 31323987 G T ASXL3 Missense_Mutation p.R1392I 0.17 probably_damaging(0.972) TCGA-49-AARN-01 18 42532101 42532101 C T SETBP1 Silent p.S932S 0.09 TCGA-49-AARN-01 18 5292009 5292009 C T ZBTB14 Silent p.K66K 0.07 TCGA-49-AARN-01 18 61011694 61011694 A T KDSR Silent p.A214A 0.28 TCGA-49-AARN-01 18 61377464 61377464 C T SERPINB11 Missense_Mutation p.L13F 0.36 tolerated(0.24) possibly_damaging(0.527) TCGA-49-AARN-01 18 65179283 65179283 C T DSEL Missense_Mutation p.V865I 0.05 tolerated(0.15) benign(0.034) TCGA-49-AARN-01 18 74580719 74580719 G A ZNF236 Missense_Mutation p.E146K 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-49-AARN-01 18 9570190 9570190 T G PPP4R1 Missense_Mutation p.N513T 0.07 tolerated(0.2) probably_damaging(0.999) TCGA-49-AARN-01 19 10478996 10478996 T C TYK2 Missense_Mutation p.S98G 0.08 tolerated(0.1) benign(0.001) TCGA-49-AARN-01 19 12430402 12430402 C A ZNF563 Missense_Mutation p.R146L 0.21 deleterious(0.01) benign(0.074) TCGA-49-AARN-01 19 15511157 15511157 C T AKAP8L Missense_Mutation p.E333K 0.09 tolerated(0.11) possibly_damaging(0.899) TCGA-49-AARN-01 19 15871693 15871693 G A LLNLR-249E10.1 RNA 0.11 TCGA-49-AARN-01 19 16240408 16240408 A C RAB8A Missense_Mutation p.K175N 0.09 tolerated(0.32) benign(0.003) TCGA-49-AARN-01 19 16918833 16918833 T C NWD1 Silent p.V1391V 0.06 TCGA-49-AARN-01 19 17946827 17946827 G A JAK3 Missense_Mutation p.A607V 0.23 deleterious(0.02) probably_damaging(0.99) TCGA-49-AARN-01 19 19166736 19166736 A T ARMC6 Missense_Mutation p.Q431L 0.21 deleterious(0) possibly_damaging(0.742) TCGA-49-AARN-01 19 30936337 30936338 - T ZNF536 Frame_Shift_Ins p.G624Wfs*47 0.20 TCGA-49-AARN-01 19 31767491 31767491 C A TSHZ3 Missense_Mutation p.D1070Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-49-AARN-01 19 31770556 31770556 G T TSHZ3 Missense_Mutation p.P48Q 0.31 tolerated(0.54) benign(0.219) TCGA-49-AARN-01 19 3179542 3179542 A T S1PR4 Missense_Mutation p.K251M 0.07 deleterious(0) possibly_damaging(0.894) TCGA-49-AARN-01 19 3600066 3600066 G T TBXA2R Silent p.A189A 0.19 TCGA-49-AARN-01 19 3600282 3600282 C A TBXA2R Silent p.L117L 0.19 TCGA-49-AARN-01 19 37310991 37310991 C T ZNF790 Silent p.K85K 0.10 TCGA-49-AARN-01 19 37975148 37975148 C T ZNF570 Silent p.P208P 0.20 TCGA-49-AARN-01 19 41596384 41596384 G A CYP2A13 Missense_Mutation p.R190H 0.13 deleterious(0.04) benign(0.097) TCGA-49-AARN-01 19 42492704 42492704 T C ATP1A3 Missense_Mutation p.D19G 0.07 tolerated(0.09) benign(0.174) TCGA-49-AARN-01 19 42813889 42813889 T G PRR19 Missense_Mutation p.D51E 0.10 tolerated(0.35) benign(0.009) TCGA-49-AARN-01 19 4290587 4290587 A C SHD Missense_Mutation p.E327A 0.19 deleterious(0) benign(0.362) TCGA-49-AARN-01 19 43359783 43359783 C - PSG10P 5'Flank 0.14 TCGA-49-AARN-01 19 44571440 44571440 A G ZNF223 3'UTR 0.11 TCGA-49-AARN-01 19 44792043 44792043 A C ZNF235 Missense_Mutation p.F515L 0.07 deleterious(0) probably_damaging(0.983) TCGA-49-AARN-01 19 46129982 46129982 T G EML2 Missense_Mutation p.K442T 0.05 deleterious(0) possibly_damaging(0.847) TCGA-49-AARN-01 19 47127047 47127047 A T PTGIR Missense_Mutation p.F146I 0.18 tolerated(0.08) possibly_damaging(0.823) TCGA-49-AARN-01 19 47844673 47844673 T C C5AR2 Missense_Mutation p.L206P 0.09 deleterious(0) possibly_damaging(0.776) TCGA-49-AARN-01 19 47858457 47858457 T G DHX34 Missense_Mutation p.D289E 0.08 deleterious(0) probably_damaging(0.983) TCGA-49-AARN-01 19 49079335 49079335 A C SULT2B1 Missense_Mutation p.K70T 0.08 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 19 50961983 50961983 C A MYBPC2 Silent p.A826A 0.15 TCGA-49-AARN-01 19 52222525 52222525 C A HAS1 Missense_Mutation p.W212C 0.16 deleterious(0) probably_damaging(0.999) TCGA-49-AARN-01 19 53085727 53085728 - A ZNF701 Frame_Shift_Ins p.L206Afs*11 0.14 TCGA-49-AARN-01 19 54080208 54080208 G A ZNF331 Missense_Mutation p.E132K 0.08 tolerated(0.43) benign(0.008) TCGA-49-AARN-01 19 55107946 55107946 C A LILRA1 Silent p.L417L 0.21 TCGA-49-AARN-01 19 55401240 55401240 G A FCAR 3'UTR 0.22 TCGA-49-AARN-01 19 58441796 58441796 C A ZNF418 Missense_Mutation p.G45C 0.26 deleterious(0) possibly_damaging(0.607) TCGA-49-AARN-01 19 58441797 58441797 C A ZNF418 Silent p.L44L 0.27 TCGA-49-AARN-01 19 58850525 58850525 C T ZSCAN22 Nonsense_Mutation p.Q437* 0.08 TCGA-49-AARN-01 19 8188893 8188893 C A FBN3 Splice_Site p.X911_splice 0.33 TCGA-49-AARN-01 19 8922726 8922726 C A ZNF558 Missense_Mutation p.R147L 0.16 tolerated(0.9) benign(0) TCGA-49-AARN-01 19 8997436 8997436 G T MUC16 Silent p.T13662T 0.11 TCGA-49-AARN-01 19 9049986 9049986 T A MUC16 Missense_Mutation p.T10549S 0.27 benign(0.016) TCGA-49-AARN-01 19 9064299 9064299 G A MUC16 Missense_Mutation p.P7716L 0.10 unknown(0) TCGA-49-AARN-01 19 9068851 9068851 C A MUC16 Missense_Mutation p.V6199F 0.12 unknown(0) TCGA-49-AARN-01 19 9069475 9069475 C A MUC16 Missense_Mutation p.G5991C 0.20 unknown(0) TCGA-49-AARN-01 19 9072575 9072575 G T MUC16 Missense_Mutation p.N4957K 0.14 unknown(0) TCGA-49-AARN-01 1 100155098 100155098 G A PALMD Missense_Mutation p.E428K 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-49-AARN-01 1 100623877 100623877 G A LRRC39 Silent p.I141I 0.08 TCGA-49-AARN-01 1 103480144 103480144 A T COL11A1 Missense_Mutation p.Y499N 0.31 probably_damaging(0.993) TCGA-49-AARN-01 1 110032583 110032583 G A ATXN7L2 Missense_Mutation p.D357N 0.07 tolerated(0.08) possibly_damaging(0.557) TCGA-49-AARN-01 1 110255747 110255747 A C GSTM5 Missense_Mutation p.D40A 0.08 deleterious(0) benign(0.048) TCGA-49-AARN-01 1 11167514 11167514 A C MTOR 3'UTR 0.08 TCGA-49-AARN-01 1 113460478 113460478 A C SLC16A1 Missense_Mutation p.L184V 0.12 tolerated(0.09) benign(0.151) TCGA-49-AARN-01 1 115428747 115428747 G A SYCP1 Missense_Mutation p.S336N 0.08 tolerated(0.49) benign(0.023) TCGA-49-AARN-01 1 11594561 11594561 T C PTCHD2 Missense_Mutation p.C1167R 0.31 deleterious(0) benign(0.248) TCGA-49-AARN-01 1 116663653 116663653 A T MAB21L3 Missense_Mutation p.Q50L 0.26 deleterious(0) possibly_damaging(0.821) TCGA-49-AARN-01 1 12885034 12885034 C T PRAMEF11 Silent p.L359L 0.14 TCGA-49-AARN-01 1 1309396 1309396 C A AURKAIP1 Missense_Mutation p.R161L 0.18 deleterious(0) probably_damaging(0.928) TCGA-49-AARN-01 1 142713966 142713966 C G RP11-417J8.6 RNA 0.21 TCGA-49-AARN-01 1 144921971 144921971 A C PDE4DIP Missense_Mutation p.L353R 0.04 deleterious(0.03) probably_damaging(1) TCGA-49-AARN-01 1 145492322 145492322 A C LIX1L Missense_Mutation p.I182L 0.06 deleterious(0) possibly_damaging(0.658) TCGA-49-AARN-01 1 150054930 150054930 A G VPS45 Missense_Mutation p.E356G 0.36 tolerated(0.4) possibly_damaging(0.72) TCGA-49-AARN-01 1 151026786 151026786 A C CDC42SE1 Silent p.V59V 0.04 TCGA-49-AARN-01 1 152059681 152059681 T A TCHHL1 Silent p.P159P 0.20 TCGA-49-AARN-01 1 152280508 152280508 T C FLG Missense_Mutation p.H2285R 0.03 benign(0.227) TCGA-49-AARN-01 1 152286150 152286150 T G FLG Missense_Mutation p.Q404H 0.10 probably_damaging(0.986) TCGA-49-AARN-01 1 152856996 152856996 A G SMCP Missense_Mutation p.Q33R 0.12 tolerated(0.66) benign(0.145) TCGA-49-AARN-01 1 153903250 153903250 C A DENND4B Missense_Mutation p.V1400F 0.46 deleterious(0.01) benign(0.052) TCGA-49-AARN-01 1 153973454 153973454 C T NUP210L Missense_Mutation p.R1755K 0.26 tolerated(0.53) benign(0.002) TCGA-49-AARN-01 1 154318848 154318848 G - ATP8B2 Frame_Shift_Del p.V1008Cfs*94 0.09 TCGA-49-AARN-01 1 154562726 154562726 C A ADAR Silent p.V810V 0.17 TCGA-49-AARN-01 1 155106491 155106491 C T EFNA1 Missense_Mutation p.P189L 0.15 deleterious(0.03) possibly_damaging(0.904) TCGA-49-AARN-01 1 155448625 155448625 A C ASH1L Missense_Mutation p.L1346V 0.08 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-49-AARN-01 1 155451481 155451481 T G ASH1L Missense_Mutation p.S394R 0.05 tolerated_low_confidence(0.06) benign(0.053) TCGA-49-AARN-01 1 156386561 156386561 C T C1orf61 Missense_Mutation p.S24N 0.05 tolerated_low_confidence(0.17) benign(0.015) TCGA-49-AARN-01 1 156640920 156640920 T G NES Missense_Mutation p.K1020N 0.13 tolerated(0.12) benign(0.037) TCGA-49-AARN-01 1 156812982 156812982 C A INSRR Silent p.S980S 0.18 TCGA-49-AARN-01 1 15767038 15767038 G T CTRC Missense_Mutation p.G61V 0.11 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 1 157767709 157767709 C T FCRL1 Missense_Mutation p.E379K 0.09 tolerated(0.38) benign(0.006) TCGA-49-AARN-01 1 158605771 158605771 C A SPTA1 Missense_Mutation p.E1788D 0.24 tolerated(0.37) benign(0.106) TCGA-49-AARN-01 1 158912107 158912107 G A PYHIN1 Missense_Mutation p.R307K 0.10 tolerated(0.22) benign(0.033) TCGA-49-AARN-01 1 159897219 159897219 G A IGSF9 Silent p.F1152F 0.15 TCGA-49-AARN-01 1 160268782 160268782 C T COPA Splice_Site p.X620_splice 0.27 TCGA-49-AARN-01 1 161953810 161953810 C T OLFML2B Silent p.L636L 0.14 TCGA-49-AARN-01 1 162313624 162313624 G T NOS1AP Splice_Site p.X152_splice 0.12 TCGA-49-AARN-01 1 162381857 162381857 C G SH2D1B 5'UTR 0.29 TCGA-49-AARN-01 1 166818763 166818763 G A POGK Missense_Mutation p.R316K 0.11 deleterious(0.01) probably_damaging(0.946) TCGA-49-AARN-01 1 167097759 167097759 G A DUSP27 Missense_Mutation p.E1131K 0.12 deleterious(0) possibly_damaging(0.804) TCGA-49-AARN-01 1 16719895 16719895 G A SZRD1 Missense_Mutation p.E92K 0.11 deleterious(0) benign(0.334) TCGA-49-AARN-01 1 167517325 167517325 C G CREG1 Missense_Mutation p.A130P 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-49-AARN-01 1 168160665 168160665 A C TIPRL Missense_Mutation p.K148T 0.07 tolerated(0.1) benign(0.068) TCGA-49-AARN-01 1 17402183 17402183 G C PADI2 Silent p.P482P 0.13 TCGA-49-AARN-01 1 174652725 174652725 A T RABGAP1L Missense_Mutation p.L630F 0.25 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 1 175049465 175049465 G A TNN Silent p.E317E 0.15 TCGA-49-AARN-01 1 175334330 175334330 T G TNR Silent p.A801A 0.12 TCGA-49-AARN-01 1 176838083 176838083 C G ASTN1 Missense_Mutation p.D1182H 0.17 deleterious(0) possibly_damaging(0.851) TCGA-49-AARN-01 1 182636007 182636007 T G RGS8 Missense_Mutation p.K61T 0.14 deleterious(0.01) benign(0.178) TCGA-49-AARN-01 1 183085919 183085919 T G LAMC1 Missense_Mutation p.F482C 0.14 deleterious(0) probably_damaging(0.984) TCGA-49-AARN-01 1 183253112 183253112 T G NMNAT2 Intron 0.18 TCGA-49-AARN-01 1 183556104 183556104 G T NCF2 Silent p.T61T 0.19 TCGA-49-AARN-01 1 183816735 183816735 C T RGL1 Silent p.V93V 0.06 TCGA-49-AARN-01 1 192545000 192545000 G A RGS1 Silent p.L26L 0.11 TCGA-49-AARN-01 1 193091309 193091309 G A CDC73 5'UTR 0.08 TCGA-49-AARN-01 1 19525148 19525148 G A UBR4 Missense_Mutation p.P179S 0.12 benign(0.022) TCGA-49-AARN-01 1 196367775 196367775 C A KCNT2 Missense_Mutation p.W404C 0.23 deleterious(0) probably_damaging(0.998) TCGA-49-AARN-01 1 197071978 197071978 T C ASPM Missense_Mutation p.S2135G 0.07 deleterious(0.01) benign(0.036) TCGA-49-AARN-01 1 197128925 197128925 G A ZBTB41 Missense_Mutation p.S765F 0.21 deleterious(0.01) benign(0.366) TCGA-49-AARN-01 1 198713265 198713265 C T PTPRC Missense_Mutation p.P927L 0.12 deleterious(0.03) benign(0.022) TCGA-49-AARN-01 1 201009823 201009823 C A CACNA1S Missense_Mutation p.C1718F 0.19 tolerated_low_confidence(0.19) benign(0.003) TCGA-49-AARN-01 1 201355773 201355773 G A LAD1 Missense_Mutation p.S239F 0.14 tolerated(0.45) benign(0.015) TCGA-49-AARN-01 1 201489424 201489424 T A RPS10P7 RNA 0.16 TCGA-49-AARN-01 1 205116726 205116726 T G DSTYK Missense_Mutation p.N917T 0.11 tolerated(0.44) benign(0.001) TCGA-49-AARN-01 1 206240160 206240160 A G C1orf186 Missense_Mutation p.S98P 0.10 tolerated(0.06) probably_damaging(0.956) TCGA-49-AARN-01 1 212560292 212560292 T G TMEM206 Missense_Mutation p.K156T 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-49-AARN-01 1 213414661 213414661 A T RPS6KC1 Silent p.G614G 0.06 TCGA-49-AARN-01 1 214788230 214788230 T C CENPF Missense_Mutation p.M73T 0.06 benign(0.109) TCGA-49-AARN-01 1 216369959 216369959 C G USH2A Missense_Mutation p.G1396A 0.10 benign(0.073) TCGA-49-AARN-01 1 216369963 216369963 C A USH2A Missense_Mutation p.V1395L 0.11 benign(0.02) TCGA-49-AARN-01 1 220311263 220311263 C T IARS2 Nonsense_Mutation p.Q685* 0.14 TCGA-49-AARN-01 1 220805542 220805542 G A MARK1 Splice_Site p.X337_splice 0.08 TCGA-49-AARN-01 1 222716987 222716987 A C HHIPL2 Missense_Mutation p.F289C 0.09 deleterious(0) probably_damaging(0.999) TCGA-49-AARN-01 1 222717029 222717029 A G HHIPL2 Missense_Mutation p.L275S 0.08 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 1 225155148 225155148 G A DNAH14 Missense_Mutation p.D172N 0.12 deleterious(0.01) probably_damaging(0.988) TCGA-49-AARN-01 1 225155203 225155203 C T DNAH14 Missense_Mutation p.P190L 0.05 deleterious(0.02) possibly_damaging(0.602) TCGA-49-AARN-01 1 227216485 227216485 G A CDC42BPA Silent p.I1400I 0.11 TCGA-49-AARN-01 1 2290075 2290075 G A MORN1 Silent p.F275F 0.08 TCGA-49-AARN-01 1 229730601 229730601 C T TAF5L Missense_Mutation p.D405N 0.12 deleterious(0) probably_damaging(0.983) TCGA-49-AARN-01 1 231830410 231830410 C T DISC1 Silent p.S302S 0.10 TCGA-49-AARN-01 1 233514811 233514811 G A MLK4 Missense_Mutation p.E687K 0.11 tolerated(0.31) benign(0.027) TCGA-49-AARN-01 1 236914945 236914945 G A ACTN2 Nonsense_Mutation p.W611* 0.19 TCGA-49-AARN-01 1 237969514 237969514 T A RYR2 Silent p.L4743L 0.15 TCGA-49-AARN-01 1 24078896 24078896 G T TCEB3 Splice_Site p.X502_splice 0.31 TCGA-49-AARN-01 1 243289793 243289793 G C CEP170 Missense_Mutation p.F1571L 0.27 deleterious_low_confidence(0.02) probably_damaging(0.989) TCGA-49-AARN-01 1 245849653 245849653 A T KIF26B Missense_Mutation p.E1123V 0.12 tolerated(0.12) unknown(0) TCGA-49-AARN-01 1 248202225 248202225 G T OR2L2 Missense_Mutation p.R219L 0.19 tolerated(0.23) benign(0.023) TCGA-49-AARN-01 1 248224067 248224067 C A OR2L3 Silent p.I28I 0.22 TCGA-49-AARN-01 1 248551633 248551633 T C OR2T6 Missense_Mutation p.S242P 0.30 deleterious(0) probably_damaging(0.974) TCGA-49-AARN-01 1 249212000 249212000 A T PGBD2 Missense_Mutation p.E406V 0.22 deleterious(0.01) possibly_damaging(0.653) TCGA-49-AARN-01 1 2537726 2537726 G A MMEL1 Silent p.I237I 0.10 TCGA-49-AARN-01 1 39797176 39797176 A C MACF1 Intron 0.06 TCGA-49-AARN-01 1 40235491 40235491 T A OXCT2 Missense_Mutation p.K479N 0.10 tolerated(0.47) benign(0.004) TCGA-49-AARN-01 1 44071094 44071094 G T PTPRF Silent p.V1123V 0.09 TCGA-49-AARN-01 1 44159712 44159712 T C KDM4A Missense_Mutation p.V808A 0.14 deleterious(0.04) probably_damaging(0.959) TCGA-49-AARN-01 1 44365346 44365346 T A ST3GAL3 Missense_Mutation p.F300I 0.17 deleterious(0) probably_damaging(0.988) TCGA-49-AARN-01 1 48698041 48698041 C A SLC5A9 Silent p.V325V 0.23 TCGA-49-AARN-01 1 49202065 49202065 G T BEND5 Silent p.T318T 0.14 TCGA-49-AARN-01 1 53678994 53678994 C T CPT2 Silent p.I568I 0.10 TCGA-49-AARN-01 1 53995476 53995476 G T GLIS1 Silent p.T315T 0.11 TCGA-49-AARN-01 1 54606873 54606873 T C CDCP2 Missense_Mutation p.T221A 0.27 tolerated(0.5) benign(0.009) TCGA-49-AARN-01 1 60463291 60463291 C A C1orf87 Silent p.L490L 0.28 TCGA-49-AARN-01 1 63018502 63018502 A C DOCK7 Silent p.L889L 0.23 TCGA-49-AARN-01 1 66081726 66081726 G C LEPR Missense_Mutation p.Q677H 0.20 deleterious(0.05) benign(0.308) TCGA-49-AARN-01 1 68564484 68564484 A C WLS Intron 0.09 TCGA-49-AARN-01 1 75188871 75188871 T A CRYZ Missense_Mutation p.L65F 0.12 deleterious(0.02) benign(0.383) TCGA-49-AARN-01 1 77763282 77763282 A G AK5 Missense_Mutation p.I152V 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-49-AARN-01 1 7897194 7897194 A G PER3 Silent p.Q1169Q 0.10 TCGA-49-AARN-01 1 79470829 79470829 C T ELTD1 Missense_Mutation p.C33Y 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-49-AARN-01 1 79470831 79470831 T A ELTD1 Missense_Mutation p.K32N 0.09 deleterious_low_confidence(0.02) benign(0.174) TCGA-49-AARN-01 1 79470833 79470833 T G ELTD1 Missense_Mutation p.K32Q 0.07 deleterious_low_confidence(0.03) benign(0.197) TCGA-49-AARN-01 1 84408254 84408254 T C TTLL7 Silent p.R205R 0.19 TCGA-49-AARN-01 1 89273014 89273014 G A PKN2 Missense_Mutation p.D608N 0.06 tolerated(0.37) benign(0.001) TCGA-49-AARN-01 1 89426937 89426937 C T CCBL2 Missense_Mutation p.D234N 0.07 tolerated(0.25) benign(0.066) TCGA-49-AARN-01 1 90050199 90050199 G T LRRC8B Missense_Mutation p.D664Y 0.19 deleterious(0) benign(0.358) TCGA-49-AARN-01 1 94946116 94946116 T A ABCD3 Missense_Mutation p.Y261N 0.18 deleterious(0) benign(0.063) TCGA-49-AARN-01 1 97216998 97216998 A G PTBP2 Silent p.L19L 0.14 TCGA-49-AARN-01 1 9995582 9995582 T A LZIC Missense_Mutation p.T69S 0.05 tolerated(0.3) benign(0.106) TCGA-49-AARN-01 20 1293283 1293283 G A SDCBP2 Nonsense_Mutation p.Q170* 0.08 TCGA-49-AARN-01 20 14308019 14308019 T C FLRT3 Missense_Mutation p.N45S 0.23 deleterious(0) probably_damaging(0.998) TCGA-49-AARN-01 20 18393412 18393412 C A DZANK1 Missense_Mutation p.G437V 0.24 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 20 25472148 25472148 C T NINL Missense_Mutation p.G442R 0.12 deleterious(0.05) benign(0.093) TCGA-49-AARN-01 20 34022109 34022109 G A GDF5 Silent p.T368T 0.18 TCGA-49-AARN-01 20 3564616 3564616 A G ATRN Missense_Mutation p.S946G 0.05 tolerated(0.59) benign(0.003) TCGA-49-AARN-01 20 39317565 39317565 G T MAFB 5'UTR 0.38 TCGA-49-AARN-01 20 40141547 40141547 C A CHD6 Missense_Mutation p.A264S 0.21 tolerated(0.11) benign(0.404) TCGA-49-AARN-01 20 40730774 40730774 G T PTPRT Missense_Mutation p.A1235E 0.26 deleterious(0.01) possibly_damaging(0.76) TCGA-49-AARN-01 20 44698919 44698919 A T NCOA5 Missense_Mutation p.F99I 0.06 tolerated_low_confidence(0.44) unknown(0) TCGA-49-AARN-01 20 46268772 46268772 A C NCOA3 Missense_Mutation p.Q1019H 0.06 tolerated(0.07) probably_damaging(0.971) TCGA-49-AARN-01 20 46282242 46282242 C T NCOA3 3'UTR 0.07 TCGA-49-AARN-01 20 47256392 47256392 G T PREX1 Missense_Mutation p.S1272R 0.19 tolerated(0.36) benign(0.066) TCGA-49-AARN-01 20 47268021 47268021 C A PREX1 Silent p.V856V 0.20 TCGA-49-AARN-01 20 47296283 47296283 T A PREX1 Missense_Mutation p.K482M 0.06 deleterious(0) probably_damaging(0.994) TCGA-49-AARN-01 20 50769806 50769806 T A ZFP64 Nonsense_Mutation p.K309* 0.32 TCGA-49-AARN-01 20 52569985 52569985 A C BCAS1 Missense_Mutation p.F556V 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-49-AARN-01 20 60775984 60775984 C T MTG2 Nonsense_Mutation p.Q358* 0.19 TCGA-49-AARN-01 20 61468604 61468604 C A COL9A3 Missense_Mutation p.D591E 0.23 tolerated(0.28) probably_damaging(0.996) TCGA-49-AARN-01 21 10863048 10863048 G C IGHV1OR21-1 Missense_Mutation p.C115S 0.07 deleterious(0) probably_damaging(0.991) TCGA-49-AARN-01 21 11098800 11098800 C T BAGE2 RNA 0.10 TCGA-49-AARN-01 21 38593626 38593626 T A DSCR3 3'Flank 0.19 TCGA-49-AARN-01 21 39493317 39493317 T G DSCR4 Missense_Mutation p.E11D 0.10 benign(0.388) TCGA-49-AARN-01 21 40847071 40847071 C T SH3BGR Missense_Mutation p.S144F 0.16 deleterious(0) probably_damaging(0.943) TCGA-49-AARN-01 21 40847078 40847078 C T SH3BGR Silent p.F146F 0.16 TCGA-49-AARN-01 21 44190883 44190883 A G PDE9A Missense_Mutation p.K554R 0.07 deleterious(0.04) possibly_damaging(0.554) TCGA-49-AARN-01 21 44433348 44433348 G C PKNOX1 Missense_Mutation p.Q174H 0.14 tolerated(0.12) probably_damaging(0.948) TCGA-49-AARN-01 21 44479361 44479361 C T CBS Missense_Mutation p.E400K 0.23 tolerated(0.25) benign(0.001) TCGA-49-AARN-01 21 45507711 45507711 C T TRAPPC10 Missense_Mutation p.L891F 0.09 tolerated(0.11) benign(0.048) TCGA-49-AARN-01 21 45949708 45949708 C T TSPEAR Missense_Mutation p.D255N 0.12 tolerated(0.08) benign(0.007) TCGA-49-AARN-01 21 46058126 46058126 G T KRTAP10-10 3'UTR 0.14 TCGA-49-AARN-01 22 17265203 17265203 T A XKR3 Missense_Mutation p.K229M 0.55 deleterious(0.01) probably_damaging(0.98) TCGA-49-AARN-01 22 17690322 17690322 G C CECR1 Silent p.P82P 0.15 TCGA-49-AARN-01 22 18083885 18083885 T G ATP6V1E1 Missense_Mutation p.Q113H 0.06 deleterious(0.01) benign(0.291) TCGA-49-AARN-01 22 20079070 20079070 G A DGCR8 Silent p.R473R 0.05 TCGA-49-AARN-01 22 23214088 23214088 C A IGLV4-3 Missense_Mutation p.P82H 0.08 deleterious(0.01) probably_damaging(0.963) TCGA-49-AARN-01 22 30862366 30862366 C T SEC14L3 Missense_Mutation p.E179K 0.20 deleterious(0.04) probably_damaging(0.939) TCGA-49-AARN-01 22 31822711 31822711 G T DRG1 Missense_Mutation p.R275L 0.09 tolerated(0.24) benign(0.051) TCGA-49-AARN-01 22 36680529 36680529 G A MYH9 Missense_Mutation p.R1838C 0.21 probably_damaging(0.937) TCGA-49-AARN-01 22 37709623 37709623 C A CYTH4 3'UTR 0.33 TCGA-49-AARN-01 22 47189646 47189646 A C TBC1D22A Missense_Mutation p.K123T 0.27 tolerated(0.4) benign(0.002) TCGA-49-AARN-01 22 50684457 50684457 G A HDAC10 Missense_Mutation p.P572L 0.21 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 22 50898508 50898508 C A SBF1 Missense_Mutation p.V1122L 0.20 tolerated(0.11) benign(0.027) TCGA-49-AARN-01 2 102958725 102958725 C A IL1RL1 Missense_Mutation p.A218E 0.17 tolerated(0.43) benign(0.005) TCGA-49-AARN-01 2 103068525 103068525 A T IL18RAP Nonsense_Mutation p.K562* 0.05 TCGA-49-AARN-01 2 105858311 105858311 C - GPR45 5'UTR 0.20 TCGA-49-AARN-01 2 108488197 108488197 C T RGPD4 Missense_Mutation p.T1246I 0.20 deleterious(0) possibly_damaging(0.638) TCGA-49-AARN-01 2 113940257 113940257 T C PSD4 Missense_Mutation p.L75P 0.11 tolerated_low_confidence(0.06) possibly_damaging(0.766) TCGA-49-AARN-01 2 120194927 120194927 T G TMEM37 Missense_Mutation p.F162V 0.04 deleterious(0) probably_damaging(0.999) TCGA-49-AARN-01 2 125262065 125262065 G T CNTNAP5 Missense_Mutation p.S419I 0.20 tolerated(0.34) benign(0.005) TCGA-49-AARN-01 2 125671838 125671838 C A CNTNAP5 Missense_Mutation p.S1298R 0.17 tolerated(0.52) benign(0.036) TCGA-49-AARN-01 2 128253632 128253632 A C IWS1 Missense_Mutation p.I553S 0.05 deleterious(0.01) benign(0.132) TCGA-49-AARN-01 2 130738392 130738392 A T RAB6C Missense_Mutation p.N235I 0.10 deleterious_low_confidence(0) benign(0.038) TCGA-49-AARN-01 2 139428973 139428973 G T NXPH2 Missense_Mutation p.T105K 0.27 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 2 141072662 141072662 G T LRP1B Nonsense_Mutation p.S4216* 0.12 TCGA-49-AARN-01 2 141294279 141294279 C A LRP1B Splice_Site p.X2505_splice 0.15 TCGA-49-AARN-01 2 145147511 145147511 C A ZEB2 Missense_Mutation p.G1051V 0.18 deleterious(0) probably_damaging(0.993) TCGA-49-AARN-01 2 145156054 145156054 A T ZEB2 Silent p.P900P 0.05 TCGA-49-AARN-01 2 163360954 163360954 T A KCNH7 Missense_Mutation p.Q376L 0.08 deleterious(0.02) possibly_damaging(0.566) TCGA-49-AARN-01 2 166854661 166854661 C A SCN1A Nonsense_Mutation p.E1455* 0.08 TCGA-49-AARN-01 2 166854680 166854680 T G SCN1A Missense_Mutation p.E1448D 0.08 tolerated(0.35) benign(0.01) TCGA-49-AARN-01 2 168106390 168106390 C A XIRP2 Silent p.R2830R 0.13 TCGA-49-AARN-01 2 169814601 169814604 GCAG TCT ABCB11 Frame_Shift_Del p.P738Qfs*8 0.16 TCGA-49-AARN-01 2 170367043 170367043 T G KLHL41 Missense_Mutation p.I252S 0.10 deleterious(0) benign(0.421) TCGA-49-AARN-01 2 179394990 179394990 G A TTN Missense_Mutation p.A35451V 0.18 TCGA-49-AARN-01 2 179429788 179429788 G A TTN Missense_Mutation p.S27024L 0.05 TCGA-49-AARN-01 2 179612030 179612030 C A TTN Intron 0.28 TCGA-49-AARN-01 2 179640192 179640192 A G TTN Silent p.V2133V 0.20 TCGA-49-AARN-01 2 189898777 189898777 C T COL5A2 3'UTR 0.10 TCGA-49-AARN-01 2 189929354 189929354 C A COL5A2 Missense_Mutation p.G549C 0.19 probably_damaging(1) TCGA-49-AARN-01 2 191819501 191819501 T G GLS Missense_Mutation p.F604V 0.07 deleterious(0) probably_damaging(0.983) TCGA-49-AARN-01 2 197711916 197711916 C A PGAP1 Missense_Mutation p.W654L 0.19 deleterious(0.03) possibly_damaging(0.533) TCGA-49-AARN-01 2 198281600 198281600 T G SF3B1 Missense_Mutation p.K177N 0.05 tolerated(0.07) benign(0.032) TCGA-49-AARN-01 2 203630185 203630185 G A FAM117B Missense_Mutation p.E490K 0.05 tolerated(0.17) probably_damaging(0.941) TCGA-49-AARN-01 2 206659603 206659603 A G NRP2 Missense_Mutation p.S873G 0.08 deleterious(0) probably_damaging(0.994) TCGA-49-AARN-01 2 207988914 207988914 G A KLF7 Missense_Mutation p.S106F 0.11 deleterious(0.01) possibly_damaging(0.569) TCGA-49-AARN-01 2 208795833 208795833 T A PLEKHM3 Missense_Mutation p.Q568L 0.24 deleterious(0) benign(0.079) TCGA-49-AARN-01 2 208811092 208811092 T G PLEKHM3 Missense_Mutation p.K564T 0.07 tolerated(0.07) probably_damaging(0.993) TCGA-49-AARN-01 2 210569255 210569255 A G MAP2 Intron 0.23 TCGA-49-AARN-01 2 217543598 217543598 G T IGFBP5 Missense_Mutation p.P181H 0.25 tolerated(0.07) benign(0.009) TCGA-49-AARN-01 2 220414076 220414076 G T TMEM198 Silent p.P315P 0.23 TCGA-49-AARN-01 2 228563732 228563732 G T SLC19A3 Silent p.P233P 0.16 TCGA-49-AARN-01 2 228881551 228881551 G A SPHKAP Missense_Mutation p.S1340F 0.07 deleterious(0) possibly_damaging(0.827) TCGA-49-AARN-01 2 230450650 230450650 A T DNER Missense_Mutation p.S257R 0.12 deleterious(0.01) possibly_damaging(0.899) TCGA-49-AARN-01 2 233103269 233103269 G A DIS3L2 Missense_Mutation p.A411T 0.15 deleterious(0.01) probably_damaging(1) TCGA-49-AARN-01 2 233322005 233322005 T A ALPI Silent p.T207T 0.26 TCGA-49-AARN-01 2 234628144 234628144 T G UGT1A4 Silent p.T226T 0.05 TCGA-49-AARN-01 2 237029042 237029042 A T AGAP1 Missense_Mutation p.H774L 0.24 tolerated(0.06) probably_damaging(0.999) TCGA-49-AARN-01 2 24262225 24262225 T C C2orf44 Missense_Mutation p.K47R 0.11 tolerated(0.17) benign(0.045) TCGA-49-AARN-01 2 26505876 26505876 T G HADHB Missense_Mutation p.F340V 0.06 deleterious(0.01) probably_damaging(0.981) TCGA-49-AARN-01 2 27717301 27717301 T - FNDC4 Frame_Shift_Del p.T56Lfs*37 0.12 TCGA-49-AARN-01 2 27729724 27729724 A C GCKR Silent p.G346G 0.11 TCGA-49-AARN-01 2 29022063 29022063 A C PPP1CB Splice_Site p.X294_splice 0.07 TCGA-49-AARN-01 2 32264553 32264553 G A DPY30 5'UTR 0.12 TCGA-49-AARN-01 2 32474765 32474765 G T NLRC4 Missense_Mutation p.P723H 0.20 deleterious(0) probably_damaging(0.947) TCGA-49-AARN-01 2 37008881 37008881 T C VIT Missense_Mutation p.S272P 0.10 tolerated(0.3) benign(0.128) TCGA-49-AARN-01 2 37450439 37450439 A C CEBPZ Silent p.A585A 0.10 TCGA-49-AARN-01 2 42991160 42991160 A T OXER1 Missense_Mutation p.S54T 0.16 tolerated_low_confidence(0.6) benign(0.004) TCGA-49-AARN-01 2 48027197 48027197 A C MSH6 Missense_Mutation p.K692T 0.04 tolerated(0.11) possibly_damaging(0.715) TCGA-49-AARN-01 2 49191095 49191095 G A FSHR Missense_Mutation p.H289Y 0.05 tolerated(0.51) benign(0.007) TCGA-49-AARN-01 2 55254549 55254549 A G RTN4 Missense_Mutation p.L229P 0.07 deleterious(0.01) probably_damaging(0.971) TCGA-49-AARN-01 2 55808761 55808761 T G SMEK2 Missense_Mutation p.Q436P 0.07 deleterious(0.02) probably_damaging(0.979) TCGA-49-AARN-01 2 65480991 65480991 T C ACTR2 Missense_Mutation p.L198P 0.07 deleterious(0) probably_damaging(0.986) TCGA-49-AARN-01 2 72406519 72406519 A C EXOC6B Missense_Mutation p.L794R 0.22 deleterious(0) probably_damaging(0.996) TCGA-49-AARN-01 2 72968477 72968477 T C EXOC6B Missense_Mutation p.I79V 0.19 tolerated(0.17) benign(0.24) TCGA-49-AARN-01 2 74042597 74042597 C A C2orf78 Missense_Mutation p.A416D 0.21 deleterious(0.03) possibly_damaging(0.613) TCGA-49-AARN-01 2 79313949 79313949 C A REG1B Missense_Mutation p.V58F 0.22 tolerated(0.89) benign(0.097) TCGA-49-AARN-01 2 80773128 80773128 C A CTNNA2 Silent p.R494R 0.16 TCGA-49-AARN-01 2 80874940 80874940 G A CTNNA2 Silent p.K887K 0.09 TCGA-49-AARN-01 2 95815160 95815160 G A ZNF514 Missense_Mutation p.S357L 0.08 deleterious(0.05) benign(0.05) TCGA-49-AARN-01 2 95818511 95818511 A C ZNF514 Missense_Mutation p.L42R 0.10 deleterious(0) possibly_damaging(0.682) TCGA-49-AARN-01 2 96967333 96967333 C G SNRNP200 Missense_Mutation p.R168T 0.04 tolerated(0.38) benign(0.097) TCGA-49-AARN-01 2 96971175 96971175 T C SNRNP200 Translation_Start_Site p.M1? 0.16 deleterious(0) probably_damaging(0.991) TCGA-49-AARN-01 3 100058674 100058674 C T NIT2 Missense_Mutation p.P48S 0.07 deleterious(0.02) possibly_damaging(0.615) TCGA-49-AARN-01 3 101298839 101298839 T G PCNP Silent p.L90L 0.07 TCGA-49-AARN-01 3 101572529 101572529 G T NFKBIZ Missense_Mutation p.G387W 0.18 deleterious(0) possibly_damaging(0.566) TCGA-49-AARN-01 3 102196330 102196330 C A ZPLD1 Missense_Mutation p.S388R 0.23 deleterious(0.04) possibly_damaging(0.717) TCGA-49-AARN-01 3 109049530 109049530 C A DPPA4 Missense_Mutation p.G174W 0.11 deleterious(0.02) possibly_damaging(0.685) TCGA-49-AARN-01 3 109049532 109049532 A C DPPA4 Missense_Mutation p.V173G 0.11 tolerated(0.32) benign(0.001) TCGA-49-AARN-01 3 111632391 111632391 A G PHLDB2 Missense_Mutation p.S521G 0.08 tolerated(0.69) benign(0) TCGA-49-AARN-01 3 112729928 112729928 G A C3orf17 Missense_Mutation p.L293F 0.07 deleterious(0.01) probably_damaging(0.971) TCGA-49-AARN-01 3 113890627 113890627 C A DRD3 Silent p.L71L 0.19 TCGA-49-AARN-01 3 119120945 119120945 A G ARHGAP31 Missense_Mutation p.K449R 0.05 deleterious(0) probably_damaging(0.997) TCGA-49-AARN-01 3 121137226 121137226 A - STXBP5L Frame_Shift_Del p.Q1114Hfs*9 0.16 TCGA-49-AARN-01 3 121138003 121138003 C A STXBP5L 3'UTR 0.20 TCGA-49-AARN-01 3 121417286 121417286 T A GOLGB1 Missense_Mutation p.K695I 0.08 possibly_damaging(0.908) TCGA-49-AARN-01 3 122829819 122829819 A G PDIA5 Missense_Mutation p.E170G 0.06 tolerated(0.2) possibly_damaging(0.582) TCGA-49-AARN-01 3 124826420 124826420 T G SLC12A8 Missense_Mutation p.K537T 0.06 tolerated(0.37) benign(0.002) TCGA-49-AARN-01 3 132207242 132207242 G C DNAJC13 Missense_Mutation p.G1123A 0.16 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 3 13377024 13377024 T C NUP210 Missense_Mutation p.K1258R 0.07 tolerated(1) benign(0.005) TCGA-49-AARN-01 3 139074543 139074543 T G COPB2 3'Flank 0.10 TCGA-49-AARN-01 3 140185532 140185532 G A CLSTN2 Missense_Mutation p.D435N 0.12 deleterious(0.02) benign(0.028) TCGA-49-AARN-01 3 141011613 141011613 G A ACPL2 Missense_Mutation p.E337K 0.08 tolerated(0.21) benign(0.012) TCGA-49-AARN-01 3 142681464 142681464 G T PAQR9 Missense_Mutation p.P239T 0.14 tolerated(0.14) probably_damaging(0.998) TCGA-49-AARN-01 3 148577655 148577655 T G CPB1 Missense_Mutation p.S374A 0.06 tolerated(0.32) benign(0.219) TCGA-49-AARN-01 3 148939449 148939449 A G CP Missense_Mutation p.L44P 0.20 tolerated(0.16) benign(0.007) TCGA-49-AARN-01 3 149192627 149192627 G C TM4SF4 5'UTR 0.24 TCGA-49-AARN-01 3 154018823 154018823 T A DHX36 Silent p.A437A 0.19 TCGA-49-AARN-01 3 15643476 15643476 A T BTD Intron 0.44 TCGA-49-AARN-01 3 15677126 15677126 A T BTD Missense_Mutation p.Q80H 0.10 tolerated(0.08) benign(0.009) TCGA-49-AARN-01 3 157816065 157816065 C T SHOX2 Silent p.A273A 0.15 TCGA-49-AARN-01 3 169099232 169099232 A G MECOM Missense_Mutation p.S64P 0.23 tolerated(0.38) benign(0.043) TCGA-49-AARN-01 3 170013729 170013729 G C PRKCI Missense_Mutation p.R483P 0.18 tolerated(0.14) possibly_damaging(0.519) TCGA-49-AARN-01 3 182586900 182586900 G A ATP11B Missense_Mutation p.D575N 0.08 tolerated(0.27) benign(0.016) TCGA-49-AARN-01 3 185867911 185867911 A G DGKG Missense_Mutation p.S782P 0.06 tolerated(0.22) unknown(0) TCGA-49-AARN-01 3 189585656 189585656 T G TP63 Missense_Mutation p.F306C 0.08 deleterious(0) probably_damaging(0.997) TCGA-49-AARN-01 3 19491636 19491636 A G KCNH8 Missense_Mutation p.I472V 0.13 deleterious(0.01) probably_damaging(0.99) TCGA-49-AARN-01 3 195047622 195047622 G A ACAP2 Nonsense_Mutation p.Q246* 0.08 TCGA-49-AARN-01 3 195955146 195955146 T A SLC51A Splice_Site p.X174_splice 0.07 TCGA-49-AARN-01 3 32571053 32571053 T G DYNC1LI1 Missense_Mutation p.K429Q 0.15 tolerated(0.08) possibly_damaging(0.688) TCGA-49-AARN-01 3 367665 367665 A G CHL1 Missense_Mutation p.K39E 0.16 tolerated(0.87) benign(0.007) TCGA-49-AARN-01 3 38307362 38307362 T G SLC22A13 Missense_Mutation p.F4C 0.10 deleterious(0) probably_damaging(0.996) TCGA-49-AARN-01 3 38941548 38941548 A C SCN11A Missense_Mutation p.F620C 0.10 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 3 41942292 41942292 G T ULK4 Missense_Mutation p.D404E 0.21 tolerated(0.08) benign(0.011) TCGA-49-AARN-01 3 44761731 44761731 C T ZNF502 5'UTR 0.08 TCGA-49-AARN-01 3 46307350 46307350 A C CCR3 Missense_Mutation p.K255T 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-49-AARN-01 3 47125264 47125266 TGT GG SETD2 Frame_Shift_Del p.T2002Pfs*4 0.17 TCGA-49-AARN-01 3 47144880 47144880 G A SETD2 Missense_Mutation p.R1625C 0.16 deleterious(0) probably_damaging(0.961) TCGA-49-AARN-01 3 4808223 4808223 T G ITPR1 Missense_Mutation p.F1837V 0.08 deleterious(0) benign(0.271) TCGA-49-AARN-01 3 48616631 48616631 T G COL7A1 Missense_Mutation p.N1796T 0.09 unknown(0) TCGA-49-AARN-01 3 49692679 49692679 A C BSN Missense_Mutation p.Q1897P 0.08 unknown(0) TCGA-49-AARN-01 3 49885625 49885625 T A TRAIP Missense_Mutation p.Q36L 0.32 deleterious(0) probably_damaging(0.948) TCGA-49-AARN-01 3 51392383 51392383 A C DOCK3 Missense_Mutation p.E1393A 0.10 deleterious(0) benign(0.101) TCGA-49-AARN-01 3 51978469 51978469 G A PARP3 Missense_Mutation p.E133K 0.06 tolerated(0.1) benign(0.06) TCGA-49-AARN-01 3 52386689 52386689 A G DNAH1 Missense_Mutation p.N998S 0.27 benign(0.004) TCGA-49-AARN-01 3 52544058 52544058 G T STAB1 Missense_Mutation p.Q840H 0.21 tolerated(0.12) possibly_damaging(0.497) TCGA-49-AARN-01 3 58271098 58271098 G T ABHD6 Missense_Mutation p.S252I 0.09 tolerated(0.06) benign(0.225) TCGA-49-AARN-01 3 58383406 58383406 G T PXK Silent p.S353S 0.12 TCGA-49-AARN-01 3 58629415 58629415 C T FAM3D Missense_Mutation p.R99K 0.11 deleterious(0.02) probably_damaging(0.919) TCGA-49-AARN-01 3 64640126 64640126 C T ADAMTS9 Missense_Mutation p.E407K 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-49-AARN-01 3 65416472 65416472 C A MAGI1 Missense_Mutation p.G483V 0.11 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 3 93629474 93629474 C A PROS1 Missense_Mutation p.S112I 0.14 deleterious(0) benign(0.336) TCGA-49-AARN-01 4 103579008 103579008 T C MANBA Missense_Mutation p.E512G 0.08 deleterious(0.02) benign(0.25) TCGA-49-AARN-01 4 110667634 110667634 T G CFI Missense_Mutation p.Q391H 0.11 tolerated(0.13) possibly_damaging(0.796) TCGA-49-AARN-01 4 111480882 111480882 G T ENPEP Splice_Site p.X907_splice 0.15 TCGA-49-AARN-01 4 114274590 114274590 A T ANK2 Nonsense_Mutation p.K1606* 0.13 TCGA-49-AARN-01 4 120192618 120192618 A G USP53 Missense_Mutation p.S535G 0.09 tolerated(0.3) benign(0.003) TCGA-49-AARN-01 4 123202897 123202897 A C KIAA1109 Missense_Mutation p.K3002T 0.08 benign(0.388) TCGA-49-AARN-01 4 123229139 123229139 G A KIAA1109 Missense_Mutation p.D3293N 0.05 probably_damaging(0.958) TCGA-49-AARN-01 4 129012246 129012246 G T LARP1B Missense_Mutation p.G150V 0.07 deleterious(0.02) probably_damaging(1) TCGA-49-AARN-01 4 13338893 13338893 T A HSP90AB2P RNA 0.17 TCGA-49-AARN-01 4 140283065 140283065 A T NAA15 Missense_Mutation p.E576V 0.11 tolerated(0.1) probably_damaging(0.962) TCGA-49-AARN-01 4 159569793 159569793 A G RXFP1 Missense_Mutation p.I633M 0.19 deleterious(0) probably_damaging(0.995) TCGA-49-AARN-01 4 176556197 176556197 A G GPM6A Silent p.L232L 0.13 TCGA-49-AARN-01 4 17816915 17816915 C T NCAPG Missense_Mutation p.H237Y 0.11 deleterious(0) probably_damaging(0.921) TCGA-49-AARN-01 4 1834640 1834640 T A LETM1 Missense_Mutation p.E304V 0.08 deleterious(0) probably_damaging(0.991) TCGA-49-AARN-01 4 184210676 184210676 G T WWC2 Missense_Mutation p.R1091M 0.20 deleterious(0) probably_damaging(0.999) TCGA-49-AARN-01 4 184931186 184931186 T A STOX2 Missense_Mutation p.F399I 0.17 tolerated(0.05) benign(0.094) TCGA-49-AARN-01 4 189012816 189012816 G T TRIML2 Missense_Mutation p.T292K 0.19 tolerated(0.06) possibly_damaging(0.834) TCGA-49-AARN-01 4 189012939 189012939 G A TRIML2 Missense_Mutation p.S251L 0.05 deleterious(0.03) possibly_damaging(0.822) TCGA-49-AARN-01 4 2231009 2231009 A C HAUS3 3'UTR 0.14 TCGA-49-AARN-01 4 2242708 2242708 T A HAUS3 5'UTR 0.07 TCGA-49-AARN-01 4 24839813 24839813 C T CCDC149 Missense_Mutation p.D152N 0.04 tolerated(0.13) benign(0.412) TCGA-49-AARN-01 4 366963 366963 A C ZNF141 Missense_Mutation p.K246T 0.22 deleterious(0.01) benign(0.239) TCGA-49-AARN-01 4 38933135 38933135 A T FAM114A1 Nonsense_Mutation p.K409* 0.10 TCGA-49-AARN-01 4 4275346 4275346 C T LYAR Missense_Mutation p.G295S 0.14 tolerated(0.63) benign(0.017) TCGA-49-AARN-01 4 46099223 46099223 A C GABRG1 Missense_Mutation p.I83R 0.18 deleterious(0) probably_damaging(0.998) TCGA-49-AARN-01 4 52861085 52861085 A T LRRC66 Missense_Mutation p.S701R 0.11 deleterious(0.03) possibly_damaging(0.668) TCGA-49-AARN-01 4 52938253 52938253 A C SPATA18 Missense_Mutation p.K230T 0.11 deleterious(0) benign(0.023) TCGA-49-AARN-01 4 54231833 54231833 G A SCFD2 Silent p.I92I 0.13 TCGA-49-AARN-01 4 5746990 5746990 G T EVC Silent p.G287G 0.10 TCGA-49-AARN-01 4 6325102 6325102 T A PPP2R2C Missense_Mutation p.E424V 0.23 deleterious(0.01) benign(0.401) TCGA-49-AARN-01 4 66467737 66467737 C G EPHA5 Missense_Mutation p.A178P 0.15 deleterious(0) probably_damaging(0.998) TCGA-49-AARN-01 4 68492135 68492135 C A UBA6 Nonsense_Mutation p.E821* 0.14 TCGA-49-AARN-01 4 76881249 76881249 C T SDAD1 Missense_Mutation p.E485K 0.07 tolerated(0.24) benign(0.101) TCGA-49-AARN-01 4 77095302 77095302 T C SCARB2 Missense_Mutation p.K330R 0.06 tolerated(0.46) benign(0.174) TCGA-49-AARN-01 4 79328930 79328930 A G FRAS1 Missense_Mutation p.N1415D 0.12 benign(0.003) TCGA-49-AARN-01 4 83996502 83996502 A T COPS4 Missense_Mutation p.Q380H 0.09 tolerated(0.27) benign(0.026) TCGA-49-AARN-01 4 87809299 87809299 T G C4orf36 Missense_Mutation p.K65N 0.09 deleterious(0.01) possibly_damaging(0.895) TCGA-49-AARN-01 4 90855961 90855961 G T MMRN1 Missense_Mutation p.G377V 0.23 tolerated(0.1) possibly_damaging(0.747) TCGA-49-AARN-01 4 96069931 96069931 C A BMPR1B Missense_Mutation p.T400N 0.21 tolerated(0.16) probably_damaging(0.937) TCGA-49-AARN-01 5 102503000 102503000 C T PPIP5K2 Nonsense_Mutation p.R680* 0.08 TCGA-49-AARN-01 5 1063970 1063970 C A SLC12A7 Missense_Mutation p.V910L 0.16 deleterious(0.01) benign(0.071) TCGA-49-AARN-01 5 112177317 112177317 C T APC Missense_Mutation p.P2009L 0.10 probably_damaging(1) TCGA-49-AARN-01 5 114513519 114513519 A G TRIM36 Intron 0.13 TCGA-49-AARN-01 5 127673704 127673704 G T FBN2 Missense_Mutation p.R1195S 0.14 tolerated(0.13) benign(0.174) TCGA-49-AARN-01 5 129521433 129521433 A C CHSY3 Missense_Mutation p.E866D 0.06 tolerated(0.22) benign(0.194) TCGA-49-AARN-01 5 134010771 134010771 A G SEC24A Missense_Mutation p.S339G 0.10 tolerated(1) benign(0) TCGA-49-AARN-01 5 134191106 134191106 A C C5orf24 Silent p.A172A 0.09 TCGA-49-AARN-01 5 135272633 135272633 A G FBXL21 RNA 0.07 TCGA-49-AARN-01 5 137621728 137621728 A G CDC25C Missense_Mutation p.F419L 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-49-AARN-01 5 139885371 139885371 G A ANKHD1 Missense_Mutation p.D1109N 0.06 possibly_damaging(0.822) TCGA-49-AARN-01 5 140176347 140176347 G T PCDHA2 Missense_Mutation p.D600Y 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-49-AARN-01 5 140181011 140181011 G T PCDHA3 Missense_Mutation p.V77L 0.17 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-49-AARN-01 5 140215998 140215998 A T PCDHA7 Missense_Mutation p.K677M 0.20 deleterious_low_confidence(0) benign(0.299) TCGA-49-AARN-01 5 140474662 140474662 G T PCDHB2 Missense_Mutation p.E96D 0.26 tolerated_low_confidence(0.09) benign(0.006) TCGA-49-AARN-01 5 140515214 140515214 G C PCDHB5 Missense_Mutation p.M66I 0.24 tolerated_low_confidence(0.62) benign(0) TCGA-49-AARN-01 5 140602993 140602993 G T PCDHB14 5'Flank 0.19 TCGA-49-AARN-01 5 14489022 14489022 G C TRIO Intron 0.19 TCGA-49-AARN-01 5 145202676 145202676 T G PRELID2 Missense_Mutation p.N33H 0.08 tolerated(0.73) benign(0.049) TCGA-49-AARN-01 5 149677695 149677695 C A ARSI Silent p.A264A 0.13 TCGA-49-AARN-01 5 150322222 150322222 T C ZNF300P1 RNA 0.13 TCGA-49-AARN-01 5 151784152 151784152 C G NMUR2 Missense_Mutation p.V175L 0.25 tolerated(0.47) benign(0.042) TCGA-49-AARN-01 5 153406827 153406827 T C FAM114A2 Missense_Mutation p.K233R 0.15 tolerated(0.8) benign(0.248) TCGA-49-AARN-01 5 156565706 156565706 A T MED7 3'UTR 0.19 TCGA-49-AARN-01 5 159821790 159821790 T A C5orf54 Silent p.V236V 0.11 TCGA-49-AARN-01 5 167617445 167617445 G - TENM2 Frame_Shift_Del p.G892Afs*8 0.10 TCGA-49-AARN-01 5 168006298 168006298 C A PANK3 5'UTR 0.18 TCGA-49-AARN-01 5 169108774 169108774 G A DOCK2 Missense_Mutation p.R166K 0.07 deleterious(0) probably_damaging(0.996) TCGA-49-AARN-01 5 170837584 170837584 C T NPM1 3'UTR 0.17 TCGA-49-AARN-01 5 171583642 171583642 C A STK10 Missense_Mutation p.D103Y 0.14 deleterious(0) probably_damaging(0.976) TCGA-49-AARN-01 5 173531229 173531229 A T NSG2 Splice_Site p.X72_splice 0.24 TCGA-49-AARN-01 5 175927115 175927115 G A FAF2 Missense_Mutation p.E375K 0.06 deleterious(0) probably_damaging(0.999) TCGA-49-AARN-01 5 179292842 179292842 T C TBC1D9B Silent p.R987R 0.19 TCGA-49-AARN-01 5 22143025 22143025 T C CDH12 Intron 0.17 TCGA-49-AARN-01 5 33989413 33989413 G A AMACR Missense_Mutation p.R312W 0.07 deleterious(0) probably_damaging(0.979) TCGA-49-AARN-01 5 35065868 35065868 T G PRLR Missense_Mutation p.S398R 0.06 tolerated(0.37) benign(0.01) TCGA-49-AARN-01 5 35065919 35065919 C T PRLR Missense_Mutation p.E381K 0.07 tolerated(0.13) benign(0.025) TCGA-49-AARN-01 5 36217851 36217851 T G NADK2 Missense_Mutation p.E260D 0.18 tolerated(0.25) benign(0.01) TCGA-49-AARN-01 5 37038833 37038833 A C NIPBL Missense_Mutation p.K2034T 0.07 deleterious(0) probably_damaging(0.996) TCGA-49-AARN-01 5 41061826 41061826 G A MROH2B Missense_Mutation p.A154V 0.33 tolerated(0.06) possibly_damaging(0.858) TCGA-49-AARN-01 5 424043 424043 G A AHRR Missense_Mutation p.C224Y 0.10 deleterious(0) probably_damaging(0.992) TCGA-49-AARN-01 5 42713615 42713615 A G GHR Missense_Mutation p.Q290R 0.10 deleterious(0.01) probably_damaging(0.966) TCGA-49-AARN-01 5 43649320 43649320 G T NNT Missense_Mutation p.G506C 0.14 deleterious(0.03) probably_damaging(0.984) TCGA-49-AARN-01 5 43649321 43649321 G T NNT Missense_Mutation p.G506V 0.14 tolerated(0.31) probably_damaging(0.943) TCGA-49-AARN-01 5 52386434 52386434 G T ITGA2 3'UTR 0.18 TCGA-49-AARN-01 5 52780903 52780903 G T FST Silent p.R266R 0.24 TCGA-49-AARN-01 5 55083770 55083770 G T DDX4 Missense_Mutation p.A372S 0.17 tolerated(0.18) probably_damaging(0.999) TCGA-49-AARN-01 5 55212572 55212572 T C IL31RA Missense_Mutation p.L640S 0.16 tolerated(0.07) benign(0.105) TCGA-49-AARN-01 5 68695918 68695918 T G RAD17 Missense_Mutation p.F550V 0.11 deleterious(0.01) possibly_damaging(0.461) TCGA-49-AARN-01 5 70818700 70818700 A C BDP1 Silent p.R1771R 0.09 TCGA-49-AARN-01 5 72469149 72469149 G T TMEM174 Missense_Mutation p.D27Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-49-AARN-01 5 78329216 78329216 G A DMGDH Silent p.H403H 0.13 TCGA-49-AARN-01 5 7875379 7875379 G T MTRR Missense_Mutation p.D125Y 0.10 deleterious(0) probably_damaging(0.989) TCGA-49-AARN-01 5 79372781 79372781 G A THBS4 Missense_Mutation p.D666N 0.05 deleterious(0.01) possibly_damaging(0.811) TCGA-49-AARN-01 5 80631717 80631717 T G ACOT12 Missense_Mutation p.K378Q 0.08 tolerated(0.16) possibly_damaging(0.726) TCGA-49-AARN-01 5 82818126 82818126 C A VCAN Missense_Mutation p.T1334K 0.30 deleterious(0) probably_damaging(0.995) TCGA-49-AARN-01 5 90106514 90106514 T G GPR98 Missense_Mutation p.V5146G 0.04 benign(0.001) TCGA-49-AARN-01 6 110300909 110300909 C A GPR6 Silent p.G198G 0.21 TCGA-49-AARN-01 6 110300910 110300910 C A GPR6 Missense_Mutation p.L199M 0.21 deleterious(0) probably_damaging(0.996) TCGA-49-AARN-01 6 110528743 110528743 A C CDC40 Missense_Mutation p.Q147H 0.08 tolerated(0.11) benign(0.002) TCGA-49-AARN-01 6 110729608 110729608 T G DDO Missense_Mutation p.E98D 0.08 tolerated(0.19) benign(0.026) TCGA-49-AARN-01 6 111583508 111583508 A T KIAA1919 Missense_Mutation p.N26Y 0.14 deleterious(0) probably_damaging(0.978) TCGA-49-AARN-01 6 111689031 111689031 A C REV3L Missense_Mutation p.V1987G 0.06 deleterious(0.01) benign(0.031) TCGA-49-AARN-01 6 116442801 116442801 G T COL10A1 Missense_Mutation p.Q160K 0.24 tolerated(0.83) unknown(0) TCGA-49-AARN-01 6 117890760 117890760 T G GOPC Missense_Mutation p.E351A 0.06 deleterious(0.01) probably_damaging(0.997) TCGA-49-AARN-01 6 121482175 121482175 C G TBC1D32 Silent p.V866V 0.26 TCGA-49-AARN-01 6 127767660 127767660 T G KIAA0408 Missense_Mutation p.S602R 0.07 tolerated(0.06) benign(0.023) TCGA-49-AARN-01 6 134350090 134350090 G A SLC2A12 Silent p.I291I 0.07 TCGA-49-AARN-01 6 138196096 138196096 A G TNFAIP3 Missense_Mutation p.N137S 0.28 tolerated(0.19) probably_damaging(0.995) TCGA-49-AARN-01 6 167790120 167790120 G A TCP10 Missense_Mutation p.P164S 0.42 tolerated(1) benign(0.015) TCGA-49-AARN-01 6 168464406 168464406 G A FRMD1 Missense_Mutation p.L227F 0.29 deleterious(0) probably_damaging(0.988) TCGA-49-AARN-01 6 25849642 25849642 G A SLC17A3 Missense_Mutation p.P441L 0.19 deleterious(0) benign(0.005) TCGA-49-AARN-01 6 26043546 26043546 C T HIST1H2BB Missense_Mutation p.E114K 0.14 tolerated_low_confidence(0.07) benign(0.003) TCGA-49-AARN-01 6 26056660 26056660 G A HIST1H1C 5'UTR 0.07 TCGA-49-AARN-01 6 26197163 26197163 C G HIST1H3D Missense_Mutation p.E106Q 0.08 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-49-AARN-01 6 26235201 26235201 C A HIST1H1D 5'UTR 0.19 TCGA-49-AARN-01 6 27840053 27840053 C A HIST1H3I Missense_Mutation p.G14V 0.14 deleterious_low_confidence(0.03) benign(0.066) TCGA-49-AARN-01 6 28053960 28053960 A G ZNF165 Missense_Mutation p.H141R 0.17 tolerated(0.31) benign(0.043) TCGA-49-AARN-01 6 29323251 29323251 C A OR5V1 Missense_Mutation p.C241F 0.19 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 6 30122250 30122250 T C TRIM10 Silent p.L314L 0.19 TCGA-49-AARN-01 6 30675576 30675576 T A MDC1 Missense_Mutation p.E927V 0.09 tolerated(0.11) benign(0.008) TCGA-49-AARN-01 6 30883779 30883779 A C VARS2 Missense_Mutation p.Q206H 0.05 tolerated(0.12) possibly_damaging(0.601) TCGA-49-AARN-01 6 31106557 31106557 G T PSORS1C1 Splice_Site p.X56_splice 0.21 TCGA-49-AARN-01 6 31675873 31675873 T G LY6G6F Missense_Mutation p.L203R 0.05 tolerated(0.1) benign(0.304) TCGA-49-AARN-01 6 41895225 41895225 G A BYSL Missense_Mutation p.E128K 0.07 tolerated(0.19) benign(0.419) TCGA-49-AARN-01 6 42236684 42236684 C A TRERF1 Silent p.G215G 0.30 TCGA-49-AARN-01 6 43152336 43152336 T G CUL9 Silent p.V96V 0.07 TCGA-49-AARN-01 6 63989818 63989818 A C LGSN 3'UTR 0.10 TCGA-49-AARN-01 6 70639335 70639335 G T COL19A1 Missense_Mutation p.G137C 0.17 deleterious(0) unknown(0) TCGA-49-AARN-01 6 7373579 7373579 G T CAGE1 Missense_Mutation p.F491L 0.16 tolerated(0.28) probably_damaging(0.916) TCGA-49-AARN-01 6 90402671 90402671 G C MDN1 Missense_Mutation p.R3360G 0.19 benign(0.216) TCGA-49-AARN-01 6 90497611 90497611 C T MDN1 Silent p.L432L 0.08 TCGA-49-AARN-01 7 100352848 100352848 G A ZAN Splice_Site p.X1042_splice 0.09 TCGA-49-AARN-01 7 100674978 100674978 T G MUC17 Missense_Mutation p.I94S 0.08 benign(0.001) TCGA-49-AARN-01 7 100687025 100687025 A G MUC17 Missense_Mutation p.T4110A 0.08 unknown(0) TCGA-49-AARN-01 7 103206725 103206725 C T RELN Missense_Mutation p.V1628I 0.19 tolerated(0.14) probably_damaging(0.989) TCGA-49-AARN-01 7 107564799 107564799 T G LAMB1 Missense_Mutation p.K1700N 0.09 tolerated(0.19) benign(0.001) TCGA-49-AARN-01 7 107600244 107600244 C A LAMB1 Missense_Mutation p.V784L 0.23 tolerated(0.82) benign(0.387) TCGA-49-AARN-01 7 11022495 11022495 G T PHF14 Missense_Mutation p.M203I 0.11 tolerated_low_confidence(0.27) benign(0.001) TCGA-49-AARN-01 7 115580767 115580767 A G TFEC Silent p.F294F 0.15 TCGA-49-AARN-01 7 117375439 117375439 T G CTTNBP2 Missense_Mutation p.K1191T 0.08 deleterious(0.05) possibly_damaging(0.694) TCGA-49-AARN-01 7 120610881 120610881 C T ING3 Nonsense_Mutation p.Q350* 0.10 TCGA-49-AARN-01 7 123594543 123594543 G T SPAM1 Missense_Mutation p.V307F 0.08 deleterious(0) probably_damaging(0.988) TCGA-49-AARN-01 7 126173554 126173554 C T GRM8 Missense_Mutation p.G628R 0.19 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 7 126882937 126882937 T C GRM8 Missense_Mutation p.R108G 0.16 deleterious(0) probably_damaging(0.991) TCGA-49-AARN-01 7 137330224 137330224 A G DGKI Silent p.C266C 0.15 TCGA-49-AARN-01 7 139416266 139416266 C T HIPK2 Missense_Mutation p.E190K 0.08 deleterious(0) probably_damaging(0.994) TCGA-49-AARN-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.09 deleterious(0) probably_damaging(0.967) TCGA-49-AARN-01 7 142180904 142180904 G T TRBV6-5 Missense_Mutation p.A16E 0.12 deleterious(0.01) probably_damaging(0.93) TCGA-49-AARN-01 7 142458448 142458448 A G PRSS1 Missense_Mutation p.Y28C 0.08 deleterious(0) possibly_damaging(0.872) TCGA-49-AARN-01 7 143175038 143175038 G T TAS2R41 Missense_Mutation p.G25C 0.20 deleterious(0) probably_damaging(0.919) TCGA-49-AARN-01 7 143175039 143175039 G T TAS2R41 Missense_Mutation p.G25V 0.21 deleterious(0) probably_damaging(0.986) TCGA-49-AARN-01 7 143792466 143792466 A C OR2A12 Missense_Mutation p.K89T 0.07 tolerated(0.07) benign(0.045) TCGA-49-AARN-01 7 146997279 146997279 C A CNTNAP2 Silent p.A465A 0.29 TCGA-49-AARN-01 7 149475872 149475872 C T SSPO Intron 0.21 TCGA-49-AARN-01 7 150557544 150557544 C A AOC1 Intron 0.11 TCGA-49-AARN-01 7 151664466 151664466 T C GALNTL5 Silent p.A45A 0.09 TCGA-49-AARN-01 7 151919109 151919109 A C KMT2C Missense_Mutation p.I1159S 0.05 possibly_damaging(0.616) TCGA-49-AARN-01 7 17369647 17369647 A T AHR Silent p.L174L 0.18 TCGA-49-AARN-01 7 19184555 19184555 C A FERD3L Missense_Mutation p.R144L 0.20 deleterious(0) probably_damaging(0.999) TCGA-49-AARN-01 7 30491217 30491217 G A NOD1 Missense_Mutation p.H606Y 0.19 deleterious(0) benign(0.001) TCGA-49-AARN-01 7 30491218 30491218 C A NOD1 Silent p.R605R 0.18 TCGA-49-AARN-01 7 30668274 30668274 G A GARS Missense_Mutation p.E600K 0.10 deleterious(0.01) possibly_damaging(0.901) TCGA-49-AARN-01 7 37901654 37901654 C T NME8 Nonsense_Mutation p.Q99* 0.09 TCGA-49-AARN-01 7 37927892 37927892 T C NME8 Missense_Mutation p.F421L 0.18 tolerated(0.05) possibly_damaging(0.534) TCGA-49-AARN-01 7 38424456 38424456 C G AMPH Missense_Mutation p.G684A 0.21 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 7 38796572 38796572 C T VPS41 Missense_Mutation p.D521N 0.09 deleterious(0.04) probably_damaging(0.94) TCGA-49-AARN-01 7 43495977 43495977 C T HECW1 Missense_Mutation p.T861M 0.12 deleterious(0) benign(0.411) TCGA-49-AARN-01 7 43532685 43532685 T A HECW1 Missense_Mutation p.Y1115N 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-49-AARN-01 7 44798973 44798973 C T ZMIZ2 Missense_Mutation p.P303S 0.19 tolerated(0.06) benign(0.047) TCGA-49-AARN-01 7 48313992 48313992 T G ABCA13 Missense_Mutation p.L1577V 0.10 benign(0.007) TCGA-49-AARN-01 7 6064265 6064265 T G EIF2AK1 3'UTR 0.10 TCGA-49-AARN-01 7 65439286 65439286 A C GUSB Missense_Mutation p.L463V 0.10 deleterious(0) benign(0.253) TCGA-49-AARN-01 7 66773926 66773926 C T STAG3L4 RNA 0.21 TCGA-49-AARN-01 7 66773927 66773927 G C STAG3L4 RNA 0.21 TCGA-49-AARN-01 7 73768285 73768285 G A CLIP2 Missense_Mutation p.E252K 0.06 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 7 7612792 7612792 G T MIOS Missense_Mutation p.G229V 0.19 deleterious(0) probably_damaging(0.999) TCGA-49-AARN-01 7 82580192 82580192 C - PCLO Frame_Shift_Del p.E3238Nfs*26 0.12 TCGA-49-AARN-01 7 86415657 86415657 C G GRM3 Silent p.R183R 0.08 TCGA-49-AARN-01 7 89936287 89936287 A T C7orf63 Nonsense_Mutation p.K780* 0.07 TCGA-49-AARN-01 7 92987779 92987779 G C CCDC132 3'UTR 0.17 TCGA-49-AARN-01 7 94024321 94024328 GTCTGCAT - COL1A2 5'UTR 0.11 TCGA-49-AARN-01 7 94059660 94059660 T A COL1A2 Silent p.A1352A 0.05 TCGA-49-AARN-01 7 99002529 99002529 C T PDAP1 Missense_Mutation p.E21K 0.09 deleterious(0) possibly_damaging(0.636) TCGA-49-AARN-01 7 99490129 99490129 C T TRIM4 Missense_Mutation p.R387K 0.05 tolerated(0.81) benign(0.022) TCGA-49-AARN-01 7 99654881 99654881 C T ZSCAN21 Silent p.I84I 0.11 TCGA-49-AARN-01 7 99821525 99821525 A G GATS Missense_Mutation p.Y131H 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-49-AARN-01 8 101271307 101271307 T C RNF19A Missense_Mutation p.K665R 0.04 deleterious_low_confidence(0.03) possibly_damaging(0.751) TCGA-49-AARN-01 8 110396319 110396319 A T PKHD1L1 Silent p.P146P 0.14 TCGA-49-AARN-01 8 117864237 117864237 G A RAD21 Nonsense_Mutation p.Q474* 0.14 TCGA-49-AARN-01 8 122641302 122641302 T G HAS2 Missense_Mutation p.Q93H 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-49-AARN-01 8 124253478 124253478 C T C8orf76 Missense_Mutation p.E37K 0.20 deleterious(0.01) probably_damaging(0.932) TCGA-49-AARN-01 8 131072834 131072834 T G ASAP1 Missense_Mutation p.K1061N 0.05 deleterious(0) probably_damaging(0.956) TCGA-49-AARN-01 8 132958819 132958819 A T EFR3A Missense_Mutation p.H102L 0.15 deleterious(0.05) benign(0.009) TCGA-49-AARN-01 8 141774356 141774356 T C PTK2 Missense_Mutation p.E404G 0.08 deleterious(0) probably_damaging(0.999) TCGA-49-AARN-01 8 143694493 143694493 C G ARC Silent p.T380T 0.25 TCGA-49-AARN-01 8 143999258 143999258 C T CYP11B2 5'UTR 0.06 TCGA-49-AARN-01 8 1497527 1497527 T A DLGAP2 Missense_Mutation p.L223Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-49-AARN-01 8 21862590 21862590 G A XPO7 Missense_Mutation p.M1085I 0.08 deleterious(0.04) probably_damaging(0.968) TCGA-49-AARN-01 8 22107979 22107979 A C POLR3D Missense_Mutation p.K382T 0.09 deleterious(0) probably_damaging(0.967) TCGA-49-AARN-01 8 30695498 30695498 G T TEX15 Missense_Mutation p.P2385T 0.36 deleterious(0.01) possibly_damaging(0.559) TCGA-49-AARN-01 8 37704386 37704386 C T BRF2 Silent p.K174K 0.05 TCGA-49-AARN-01 8 41525792 41525792 A C ANK1 Missense_Mutation p.V1837G 0.12 tolerated_low_confidence(0.22) benign(0.062) TCGA-49-AARN-01 8 42040297 42040297 A C PLAT Missense_Mutation p.V248G 0.08 tolerated(0.34) benign(0.008) TCGA-49-AARN-01 8 42329952 42329952 T G SLC20A2 5'UTR 0.26 TCGA-49-AARN-01 8 42587215 42587215 C T CHRNB3 Silent p.F255F 0.21 TCGA-49-AARN-01 8 42620303 42620303 A C CHRNA6 Missense_Mutation p.F42V 0.05 deleterious(0) possibly_damaging(0.844) TCGA-49-AARN-01 8 55538233 55538233 T G RP1 Silent p.T597T 0.17 TCGA-49-AARN-01 8 67355037 67355037 T C ADHFE1 Silent p.P34P 0.07 TCGA-49-AARN-01 8 67577783 67577783 G C VCPIP1 Missense_Mutation p.L471V 0.06 tolerated(0.54) benign(0) TCGA-49-AARN-01 8 67578153 67578153 C T VCPIP1 Nonsense_Mutation p.W347* 0.07 TCGA-49-AARN-01 8 68421795 68421795 G A CPA6 Missense_Mutation p.S164F 0.05 tolerated(0.12) probably_damaging(0.98) TCGA-49-AARN-01 8 72968068 72968068 A T TRPA1 Missense_Mutation p.V406E 0.22 deleterious(0) probably_damaging(0.999) TCGA-49-AARN-01 8 75276559 75276559 G T GDAP1 Missense_Mutation p.G345V 0.13 tolerated_low_confidence(0.19) benign(0) TCGA-49-AARN-01 8 90937093 90937093 C T OSGIN2 Missense_Mutation p.S328L 0.07 deleterious(0.02) possibly_damaging(0.794) TCGA-49-AARN-01 8 94746521 94746521 A C RBM12B Missense_Mutation p.D706E 0.10 tolerated_low_confidence(0.06) benign(0.017) TCGA-49-AARN-01 8 95539541 95539541 A C KIAA1429 Missense_Mutation p.L311V 0.08 tolerated(0.23) possibly_damaging(0.671) TCGA-49-AARN-01 8 98155391 98155391 G A CPQ Missense_Mutation p.E467K 0.10 tolerated(0.31) benign(0.071) TCGA-49-AARN-01 9 100429140 100429140 T C NCBP1 Missense_Mutation p.L666P 0.13 deleterious(0.03) probably_damaging(0.978) TCGA-49-AARN-01 9 104357115 104357115 A G PPP3R2 Missense_Mutation p.L33S 0.10 deleterious(0) possibly_damaging(0.78) TCGA-49-AARN-01 9 111734980 111734980 G A CTNNAL1 Missense_Mutation p.S441F 0.09 deleterious(0.02) probably_damaging(0.966) TCGA-49-AARN-01 9 111800376 111800376 G A TMEM245 Silent p.L715L 0.05 TCGA-49-AARN-01 9 112899510 112899510 G C PALM2-AKAP2 Missense_Mutation p.Q562H 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-49-AARN-01 9 123370109 123370109 T A MEGF9 Missense_Mutation p.I423F 0.10 deleterious(0.01) probably_damaging(0.984) TCGA-49-AARN-01 9 125273391 125273391 T G OR1J2 Missense_Mutation p.F104C 0.11 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-49-AARN-01 9 130206324 130206324 T C ZNF79 Silent p.S115S 0.28 TCGA-49-AARN-01 9 132719644 132719644 C A FNBP1 Nonsense_Mutation p.E170* 0.12 TCGA-49-AARN-01 9 133901754 133901754 C G LAMC3 Silent p.R152R 0.23 TCGA-49-AARN-01 9 135176092 135176092 T A SETX Missense_Mutation p.T1825S 0.14 tolerated(0.43) benign(0.017) TCGA-49-AARN-01 9 135266061 135266061 T G TTF1 Missense_Mutation p.K715N 0.06 deleterious(0) possibly_damaging(0.791) TCGA-49-AARN-01 9 135277315 135277315 T G TTF1 Missense_Mutation p.Q298H 0.05 tolerated_low_confidence(0.26) possibly_damaging(0.549) TCGA-49-AARN-01 9 135562653 135562653 G A GTF3C4 Silent p.Q781Q 0.10 TCGA-49-AARN-01 9 137801518 137801518 G T FCN1 3'UTR 0.25 TCGA-49-AARN-01 9 139113738 139113738 A T QSOX2 Missense_Mutation p.L242Q 0.06 deleterious(0) probably_damaging(0.996) TCGA-49-AARN-01 9 139393580 139393580 G A NOTCH1 Silent p.N2022N 0.07 TCGA-49-AARN-01 9 140082152 140082152 T A ANAPC2 Missense_Mutation p.Q174L 0.11 tolerated(0.52) benign(0.002) TCGA-49-AARN-01 9 140468703 140468703 C G DPH7 Missense_Mutation p.W199C 0.09 deleterious(0) probably_damaging(0.998) TCGA-49-AARN-01 9 14857694 14857694 T C FREM1 Missense_Mutation p.K229E 0.12 tolerated(1) benign(0.001) TCGA-49-AARN-01 9 16436723 16436723 C A BNC2 Missense_Mutation p.S490I 0.18 deleterious(0) probably_damaging(0.998) TCGA-49-AARN-01 9 2058363 2058363 C T SMARCA2 Nonsense_Mutation p.Q474* 0.07 TCGA-49-AARN-01 9 20933046 20933046 G T FOCAD Silent p.L1117L 0.23 TCGA-49-AARN-01 9 32631899 32631899 T G TAF1L Missense_Mutation p.K1227Q 0.05 tolerated(1) benign(0.027) TCGA-49-AARN-01 9 336665 336665 G T DOCK8 Missense_Mutation p.V457F 0.15 tolerated(0.71) benign(0.002) TCGA-49-AARN-01 9 33675395 33675395 A C PTENP1 RNA 0.09 TCGA-49-AARN-01 9 35390657 35390657 A G UNC13B Missense_Mutation p.S1003G 0.06 deleterious(0) possibly_damaging(0.887) TCGA-49-AARN-01 9 36249244 36249244 C T GNE Missense_Mutation p.E68K 0.06 tolerated(0.12) benign(0.033) TCGA-49-AARN-01 9 5969115 5969115 C A KIAA2026 Silent p.A372A 0.14 TCGA-49-AARN-01 9 67968407 67968407 G A ANKRD20A1 Missense_Mutation p.E656K 0.03 tolerated(0.35) benign(0) TCGA-49-AARN-01 9 77362814 77362814 C A TRPM6 Nonsense_Mutation p.G1692* 0.08 TCGA-49-AARN-01 9 79890464 79890464 C T VPS13A Missense_Mutation p.L855F 0.09 tolerated(0.71) benign(0.002) TCGA-49-AARN-01 9 84530474 84530474 C A SPATA31D5P RNA 0.14 TCGA-49-AARN-01 9 8486087 8486087 C A PTPRD Missense_Mutation p.E910D 0.16 tolerated(0.08) probably_damaging(0.952) TCGA-49-AARN-01 9 95099837 95099837 C T CENPP Silent p.L102L 0.18 TCGA-49-AARN-01 9 96407931 96407931 G A PHF2 Missense_Mutation p.R107H 0.19 deleterious(0) unknown(0) TCGA-49-AARN-01 9 96864014 96864014 C A PTPDC1 Missense_Mutation p.A725E 0.11 deleterious(0) probably_damaging(0.962) TCGA-49-AARN-01 X 100912270 100912270 G T ARMCX2 Missense_Mutation p.A102E 0.16 deleterious_low_confidence(0.01) benign(0.074) TCGA-49-AARN-01 X 101395826 101395826 C A TCEAL6 Missense_Mutation p.G160C 0.25 deleterious(0) probably_damaging(0.992) TCGA-49-AARN-01 X 10174510 10174510 A G CLCN4 Missense_Mutation p.K223R 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-49-AARN-01 X 101826181 101826181 C A NXF4 RNA 0.17 TCGA-49-AARN-01 X 101911867 101911867 G T GPRASP1 Missense_Mutation p.G1009V 0.17 tolerated(0.15) probably_damaging(0.974) TCGA-49-AARN-01 X 101912814 101912814 C A GPRASP1 Missense_Mutation p.L1325I 0.19 tolerated(0.06) possibly_damaging(0.536) TCGA-49-AARN-01 X 101971076 101971076 G T GPRASP2 Nonsense_Mutation p.E427* 0.26 TCGA-49-AARN-01 X 102004309 102004309 C A BHLHB9 Missense_Mutation p.A129D 0.17 deleterious(0.04) possibly_damaging(0.556) TCGA-49-AARN-01 X 103349437 103349437 C T SLC25A53 Silent p.G168G 0.18 TCGA-49-AARN-01 X 105280745 105280745 T C SERPINA7 Missense_Mutation p.D102G 0.12 tolerated(0.26) benign(0.031) TCGA-49-AARN-01 X 105449924 105449924 G A MUM1L1 Missense_Mutation p.D167N 0.12 deleterious(0.01) possibly_damaging(0.679) TCGA-49-AARN-01 X 106201653 106201653 A C MORC4 Missense_Mutation p.L433R 0.07 deleterious(0) probably_damaging(0.948) TCGA-49-AARN-01 X 107975864 107975864 A T IRS4 Silent p.T1237T 0.20 TCGA-49-AARN-01 X 107977061 107977061 C A IRS4 Silent p.G838G 0.04 TCGA-49-AARN-01 X 109694542 109694542 C A RGAG1 Missense_Mutation p.Q233K 0.05 tolerated(0.1) possibly_damaging(0.904) TCGA-49-AARN-01 X 112035088 112035088 C T AMOT Missense_Mutation p.R633K 0.05 unknown(0) TCGA-49-AARN-01 X 112048270 112048270 C A AMOT Missense_Mutation p.A561S 0.18 unknown(0) TCGA-49-AARN-01 X 114536635 114536635 A G LUZP4 Missense_Mutation p.K57R 0.08 tolerated(0.64) possibly_damaging(0.908) TCGA-49-AARN-01 X 115303929 115303929 T G AGTR2 Missense_Mutation p.I132M 0.04 deleterious(0) probably_damaging(0.988) TCGA-49-AARN-01 X 115592863 115592863 G T CT83 3'UTR 0.22 TCGA-49-AARN-01 X 117480322 117480322 T C WDR44 5'UTR 0.45 TCGA-49-AARN-01 X 120181859 120181859 G T GLUD2 Silent p.R107R 0.23 TCGA-49-AARN-01 X 129306239 129306239 C A RAB33A Missense_Mutation p.T68N 0.13 deleterious(0) possibly_damaging(0.871) TCGA-49-AARN-01 X 129759178 129759178 G A ENOX2 3'UTR 0.27 TCGA-49-AARN-01 X 131351303 131351303 C T RAP2C 5'UTR 0.04 TCGA-49-AARN-01 X 1317496 1317496 A G CRLF2 Missense_Mutation p.M190T 0.19 tolerated(0.62) benign(0.025) TCGA-49-AARN-01 X 13337402 13337402 C A ATXN3L Nonsense_Mutation p.E218* 0.04 TCGA-49-AARN-01 X 135593711 135593711 G A HTATSF1 Missense_Mutation p.E603K 0.07 deleterious_low_confidence(0.01) unknown(0) TCGA-49-AARN-01 X 136112483 136112483 G T GPR101 Missense_Mutation p.P451T 0.16 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 X 138699796 138699796 G T MCF2 Missense_Mutation p.A352E 0.05 deleterious(0) probably_damaging(0.999) TCGA-49-AARN-01 X 140785759 140785759 C A SPANXD Missense_Mutation p.V53F 0.08 tolerated(0.55) possibly_damaging(0.681) TCGA-49-AARN-01 X 1409365 1409365 C A CSF2RA Silent p.I203I 0.19 TCGA-49-AARN-01 X 142605300 142605300 G T SPANXN3 5'UTR 0.22 TCGA-49-AARN-01 X 145076370 145076370 A G MIR888 RNA 0.11 TCGA-49-AARN-01 X 145078194 145078194 A G MIR892A RNA 0.27 TCGA-49-AARN-01 X 147743887 147743887 C A AFF2 Missense_Mutation p.N213K 0.20 tolerated(0.39) probably_damaging(0.992) TCGA-49-AARN-01 X 148607489 148607489 C A IDS Intron 0.40 TCGA-49-AARN-01 X 148685678 148685678 T G TMEM185A Missense_Mutation p.D161A 0.12 deleterious(0) benign(0.31) TCGA-49-AARN-01 X 149761114 149761114 C A MTM1 Missense_Mutation p.S13Y 0.08 tolerated_low_confidence(0.2) benign(0.1) TCGA-49-AARN-01 X 151869929 151869929 G A MAGEA6 Missense_Mutation p.A207T 0.22 deleterious(0) benign(0.008) TCGA-49-AARN-01 X 152858111 152858111 G T FAM58A Silent p.A168A 0.21 TCGA-49-AARN-01 X 153135547 153135547 C A L1CAM Missense_Mutation p.G319C 0.23 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 X 153663819 153663819 T A ATP6AP1 Missense_Mutation p.S391T 0.25 tolerated(0.28) benign(0.077) TCGA-49-AARN-01 X 15782715 15782715 G T CA5B Nonsense_Mutation p.E53* 0.16 TCGA-49-AARN-01 X 17095462 17095462 G T REPS2 Missense_Mutation p.R483L 0.21 deleterious(0) probably_damaging(1) TCGA-49-AARN-01 X 31514985 31514985 G T DMD Missense_Mutation p.L2823M 0.17 possibly_damaging(0.82) TCGA-49-AARN-01 X 31697609 31697609 C A DMD Missense_Mutation p.W2585C 0.11 possibly_damaging(0.878) TCGA-49-AARN-01 X 31986502 31986502 G T DMD Missense_Mutation p.L2190M 0.19 possibly_damaging(0.82) TCGA-49-AARN-01 X 3240859 3240859 G A MXRA5 Missense_Mutation p.T956I 0.20 deleterious(0.03) benign(0.018) TCGA-49-AARN-01 X 35938153 35938153 C A CXorf22 Silent p.P79P 0.21 TCGA-49-AARN-01 X 37028560 37028560 G C FAM47C Missense_Mutation p.E693Q 0.13 deleterious(0.04) probably_damaging(0.991) TCGA-49-AARN-01 X 37660540 37660540 T C CYBB Missense_Mutation p.L279P 0.22 deleterious(0) probably_damaging(0.926) TCGA-49-AARN-01 X 39930393 39930393 G T BCOR Nonsense_Mutation p.S1024* 0.14 TCGA-49-AARN-01 X 40994013 40994013 T G USP9X Missense_Mutation p.F120V 0.08 deleterious(0) possibly_damaging(0.777) TCGA-49-AARN-01 X 48163767 48163767 C T SSX9 RNA 0.05 TCGA-49-AARN-01 X 48674049 48674049 A C HDAC6 Missense_Mutation p.T442P 0.08 tolerated(0.23) benign(0) TCGA-49-AARN-01 X 48776073 48776073 G A PIM2 Silent p.P13P 0.12 TCGA-49-AARN-01 X 53641565 53641565 C T HUWE1 Missense_Mutation p.E731K 0.06 probably_damaging(0.958) TCGA-49-AARN-01 X 53657915 53657915 C T HUWE1 Silent p.Q278Q 0.13 TCGA-49-AARN-01 X 54776438 54776438 G A ITIH6 Silent p.L1278L 0.14 TCGA-49-AARN-01 X 54841738 54841738 G T MAGED2 Missense_Mutation p.D482Y 0.26 deleterious(0.01) possibly_damaging(0.873) TCGA-49-AARN-01 X 55172491 55172491 G T FAM104B 3'UTR 0.23 TCGA-49-AARN-01 X 63445071 63445071 T C ASB12 Missense_Mutation p.I154V 0.13 tolerated(0.08) probably_damaging(0.97) TCGA-49-AARN-01 X 64949376 64949376 C A MSN Missense_Mutation p.S90Y 0.08 deleterious(0) possibly_damaging(0.825) TCGA-49-AARN-01 X 69639590 69639590 G A KIF4A Missense_Mutation p.G1151E 0.18 tolerated_low_confidence(0.11) benign(0.048) TCGA-49-AARN-01 X 70598707 70598707 G T TAF1 Missense_Mutation p.D416Y 0.17 deleterious(0) possibly_damaging(0.504) TCGA-49-AARN-01 X 70781710 70781710 C A OGT Missense_Mutation p.A646D 0.18 deleterious(0) possibly_damaging(0.585) TCGA-49-AARN-01 X 71351091 71351091 C G RGAG4 Silent p.S100S 0.20 TCGA-49-AARN-01 X 7177553 7177553 C A STS Missense_Mutation p.F187L 0.16 tolerated(0.37) benign(0.002) TCGA-49-AARN-01 X 72433689 72433689 C A NAP1L2 Nonsense_Mutation p.E214* 0.25 TCGA-49-AARN-01 X 72667560 72667560 T A CDX4 Nonsense_Mutation p.Y157* 0.15 TCGA-49-AARN-01 X 76909636 76909636 C T ATRX Silent p.K1423K 0.06 TCGA-49-AARN-01 X 76937704 76937704 C T ATRX Missense_Mutation p.G1015D 0.18 benign(0.002) TCGA-49-AARN-01 X 76938331 76938331 T G ATRX Missense_Mutation p.K806T 0.07 probably_damaging(0.996) TCGA-49-AARN-01 X 77302013 77302013 C A ATP7A Missense_Mutation p.D1483E 0.17 deleterious(0.03) probably_damaging(0.997) TCGA-49-AARN-01 X 79942461 79942461 A T BRWD3 Silent p.P1302P 0.14 TCGA-49-AARN-01 X 83723870 83723870 G T HDX Missense_Mutation p.S287R 0.19 tolerated(0.57) benign(0.002) TCGA-49-AARN-01 X 8538589 8538589 C A KAL1 Missense_Mutation p.S338I 0.27 tolerated(0.12) benign(0.213) TCGA-49-AARN-01 X 91134013 91134013 C A PCDH11X Missense_Mutation p.P925H 0.23 deleterious(0) probably_damaging(0.995) TCGA-49-AARO-01 10 100481532 100481532 C A HPSE2 Nonsense_Mutation p.G280* 0.22 TCGA-49-AARO-01 10 104136895 104136895 G T GBF1 Missense_Mutation p.D1497Y 0.12 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-49-AARO-01 10 105801272 105801272 G T COL17A1 Missense_Mutation p.P859Q 0.20 benign(0.087) TCGA-49-AARO-01 10 108366981 108366981 G T SORCS1 Silent p.V1036V 0.09 TCGA-49-AARO-01 10 108430993 108430993 A T SORCS1 Splice_Site p.X730_splice 0.18 TCGA-49-AARO-01 10 108469065 108469065 A T SORCS1 Nonsense_Mutation p.C353* 0.13 TCGA-49-AARO-01 10 115349539 115349539 G A NRAP Silent p.D1658D 0.07 TCGA-49-AARO-01 10 117228699 117228699 G T ATRNL1 Nonsense_Mutation p.E1172* 0.18 TCGA-49-AARO-01 10 117308984 117308984 T A ATRNL1 Missense_Mutation p.L1245M 0.18 deleterious(0) probably_damaging(0.998) TCGA-49-AARO-01 10 117308985 117308985 T G ATRNL1 Missense_Mutation p.L1245W 0.18 deleterious(0) probably_damaging(0.999) TCGA-49-AARO-01 10 125622186 125622186 C A CPXM2 Missense_Mutation p.A153S 0.12 tolerated(0.05) probably_damaging(0.979) TCGA-49-AARO-01 10 128974466 128974466 G T FAM196A Missense_Mutation p.S65Y 0.17 deleterious(0.01) possibly_damaging(0.807) TCGA-49-AARO-01 10 23481540 23481540 C A PTF1A Missense_Mutation p.F27L 0.21 deleterious_low_confidence(0.04) benign(0.041) TCGA-49-AARO-01 10 38241138 38241138 C A ZNF25 Nonsense_Mutation p.E430* 0.09 TCGA-49-AARO-01 10 45939209 45939209 T C ALOX5 Missense_Mutation p.L536P 0.24 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 10 48390665 48390665 G T RBP3 Silent p.A71A 0.10 TCGA-49-AARO-01 10 48413890 48413890 G T GDF2 Missense_Mutation p.H326Q 0.17 tolerated(0.15) probably_damaging(0.912) TCGA-49-AARO-01 10 49420080 49420080 G T FRMPD2 Missense_Mutation p.L510I 0.25 tolerated(0.52) benign(0.046) TCGA-49-AARO-01 10 69881469 69881469 G T MYPN Missense_Mutation p.D92Y 0.17 deleterious(0) probably_damaging(0.99) TCGA-49-AARO-01 10 73570318 73570318 C A CDH23 Missense_Mutation p.D783E 0.27 tolerated(0.27) benign(0.407) TCGA-49-AARO-01 10 84733592 84733592 G T NRG3 Nonsense_Mutation p.E445* 0.20 TCGA-49-AARO-01 10 93667908 93667908 C A FGFBP3 3'UTR 0.19 TCGA-49-AARO-01 10 95335888 95335888 G A FFAR4 Missense_Mutation p.G203E 0.17 tolerated(0.05) possibly_damaging(0.513) TCGA-49-AARO-01 10 97082537 97082537 C A SORBS1 Intron 0.22 TCGA-49-AARO-01 10 99640125 99640125 G A CRTAC1 Missense_Mutation p.P567L 0.20 tolerated_low_confidence(0.06) probably_damaging(0.972) TCGA-49-AARO-01 11 1093932 1093932 A T MUC2 Silent p.P1917P 0.19 TCGA-49-AARO-01 11 111753259 111753259 C G C11orf1 Silent p.G71G 0.32 TCGA-49-AARO-01 11 117340649 117340649 G T DSCAML1 Missense_Mutation p.Q1061K 0.08 tolerated(0.07) possibly_damaging(0.729) TCGA-49-AARO-01 11 124310226 124310226 A G OR8B8 Silent p.F252F 0.12 TCGA-49-AARO-01 11 124413388 124413388 G T OR8B12 Missense_Mutation p.H55N 0.15 deleterious_low_confidence(0) possibly_damaging(0.721) TCGA-49-AARO-01 11 124740088 124740088 T G ROBO3 Missense_Mutation p.V265G 0.38 tolerated(0.1) benign(0.243) TCGA-49-AARO-01 11 1256574 1256574 C A MUC5B Silent p.I937I 0.10 TCGA-49-AARO-01 11 1270475 1270475 C A MUC5B Missense_Mutation p.T4122K 0.15 unknown(0) TCGA-49-AARO-01 11 130010312 130010312 G T APLP2 Missense_Mutation p.Q631H 0.28 tolerated(0.14) benign(0.396) TCGA-49-AARO-01 11 13380077 13380077 C T ARNTL Silent p.S106S 0.26 TCGA-49-AARO-01 11 13387085 13387085 A T ARNTL Silent p.R166R 0.09 TCGA-49-AARO-01 11 14990498 14990498 G T CALCA Nonsense_Mutation p.C91* 0.09 TCGA-49-AARO-01 11 1628908 1628908 G T KRTAP5-3 Nonsense_Mutation p.C236* 0.18 TCGA-49-AARO-01 11 18327024 18327024 C G HPS5 Missense_Mutation p.D281H 0.17 deleterious(0.01) possibly_damaging(0.689) TCGA-49-AARO-01 11 18332990 18332990 T A HPS5 Silent p.A76A 0.13 TCGA-49-AARO-01 11 19077571 19077571 G T MRGPRX2 Missense_Mutation p.R127S 0.17 deleterious(0.01) probably_damaging(0.945) TCGA-49-AARO-01 11 20117292 20117292 G T NAV2 Silent p.G2056G 0.24 TCGA-49-AARO-01 11 22272555 22272555 G A ANO5 Nonsense_Mutation p.W393* 0.29 TCGA-49-AARO-01 11 30255313 30255313 C G FSHB Missense_Mutation p.P119R 0.15 deleterious(0) probably_damaging(0.999) TCGA-49-AARO-01 11 30435827 30435827 C A MPPED2 Silent p.T238T 0.18 TCGA-49-AARO-01 11 3063481 3063481 C T CARS Missense_Mutation p.G94S 0.12 tolerated(0.17) benign(0.005) TCGA-49-AARO-01 11 43350286 43350286 G T API5 Nonsense_Mutation p.E324* 0.23 TCGA-49-AARO-01 11 45204512 45204512 G T PRDM11 Silent p.R108R 0.12 TCGA-49-AARO-01 11 46455142 46455142 C A AMBRA1 Missense_Mutation p.G863V 0.19 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 11 5172703 5172703 G T OR52A1 Silent p.T299T 0.19 TCGA-49-AARO-01 11 55110857 55110857 C A OR4A16 Missense_Mutation p.L61I 0.16 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-49-AARO-01 11 55136089 55136089 C A OR4A15 Missense_Mutation p.L244I 0.24 tolerated_low_confidence(1) benign(0.011) TCGA-49-AARO-01 11 55322412 55322412 G T OR4C15 Missense_Mutation p.M210I 0.17 tolerated_low_confidence(1) benign(0.011) TCGA-49-AARO-01 11 55563861 55563861 C G OR5D14 Missense_Mutation p.S277C 0.22 deleterious(0.02) benign(0.366) TCGA-49-AARO-01 11 56019876 56019876 T C OR5T3 Silent p.F67F 0.26 TCGA-49-AARO-01 11 56128061 56128061 C A OR8J1 Silent p.I113I 0.16 TCGA-49-AARO-01 11 57982370 57982370 G T OR1S1 Missense_Mutation p.V52L 0.15 deleterious(0.03) benign(0.128) TCGA-49-AARO-01 11 58035176 58035176 T A OR10W1 Missense_Mutation p.Y52F 0.18 tolerated(1) benign(0.025) TCGA-49-AARO-01 11 58170783 58170783 T C OR5B3 Missense_Mutation p.I34V 0.18 deleterious_low_confidence(0.05) benign(0.002) TCGA-49-AARO-01 11 58978723 58978723 G T MPEG1 Missense_Mutation p.P539H 0.21 deleterious(0) probably_damaging(0.999) TCGA-49-AARO-01 11 59282858 59282858 C T OR4D9 Missense_Mutation p.A158V 0.16 tolerated(1) benign(0.001) TCGA-49-AARO-01 11 59949130 59949130 G T MS4A6A Missense_Mutation p.A52E 0.19 deleterious(0.04) possibly_damaging(0.503) TCGA-49-AARO-01 11 60310039 60310039 C A MS4A13 Missense_Mutation p.S150R 0.27 deleterious_low_confidence(0.02) benign(0.034) TCGA-49-AARO-01 11 62911095 62911095 G T SLC22A24 Missense_Mutation p.L53I 0.26 tolerated(1) benign(0.007) TCGA-49-AARO-01 11 6292144 6292144 G T CCKBR Intron 0.38 TCGA-49-AARO-01 11 64361127 64361127 C A SLC22A12 Silent p.R228R 0.24 TCGA-49-AARO-01 11 6648658 6648658 C A DCHS1 Missense_Mutation p.G1871V 0.33 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 11 66625248 66625248 C A LRFN4 Silent p.A11A 0.22 TCGA-49-AARO-01 11 67223849 67223849 G T CABP4 Silent p.R159R 0.12 TCGA-49-AARO-01 11 67287364 67287364 C A CABP2 Silent p.A179A 0.25 TCGA-49-AARO-01 11 68660872 68660872 C A MRPL21 Nonsense_Mutation p.G150* 0.16 TCGA-49-AARO-01 11 68678969 68678969 G T IGHMBP2 Silent p.A203A 0.18 TCGA-49-AARO-01 11 7091610 7091610 G T NLRP14 Missense_Mutation p.Q1023H 0.31 deleterious(0.04) possibly_damaging(0.711) TCGA-49-AARO-01 11 72293506 72293506 G C PDE2A Silent p.P611P 0.13 TCGA-49-AARO-01 11 75715105 75715105 G T UVRAG Nonsense_Mutation p.E295* 0.16 TCGA-49-AARO-01 11 76507446 76507446 G - TSKU Frame_Shift_Del p.G263Afs*16 0.11 TCGA-49-AARO-01 11 85435760 85435760 T A SYTL2 Missense_Mutation p.L580F 0.16 deleterious(0) benign(0.007) TCGA-49-AARO-01 11 8737237 8737237 C A ST5 Silent p.L586L 0.12 TCGA-49-AARO-01 11 9005347 9005347 C T NRIP3 Intron 0.27 TCGA-49-AARO-01 11 92085928 92085928 G T FAT3 Missense_Mutation p.G217V 0.08 probably_damaging(1) TCGA-49-AARO-01 11 94113753 94113753 C A GPR83 Missense_Mutation p.E278D 0.12 tolerated(0.07) possibly_damaging(0.689) TCGA-49-AARO-01 12 104025404 104025404 C A STAB2 Missense_Mutation p.N172K 0.13 tolerated(0.06) benign(0.01) TCGA-49-AARO-01 12 109293200 109293200 C A DAO Silent p.P287P 0.17 TCGA-49-AARO-01 12 109843817 109843817 C A MYO1H Missense_Mutation p.H298N 0.11 tolerated(1) benign(0.004) TCGA-49-AARO-01 12 110924389 110924389 C T FAM216A Nonsense_Mutation p.Q163* 0.27 TCGA-49-AARO-01 12 111785423 111785423 C A CUX2 Missense_Mutation p.S1252Y 0.39 tolerated(0.11) benign(0.429) TCGA-49-AARO-01 12 113612890 113612890 C T DDX54 Silent p.V275V 0.16 TCGA-49-AARO-01 12 122295681 122295681 C A HPD Missense_Mutation p.W25C 0.16 deleterious(0) probably_damaging(0.995) TCGA-49-AARO-01 12 124856873 124856873 C G NCOR2 Silent p.A834A 0.20 TCGA-49-AARO-01 12 129559451 129559451 C G TMEM132D Missense_Mutation p.A757P 0.06 deleterious(0) possibly_damaging(0.622) TCGA-49-AARO-01 12 14578368 14578368 G T ATF7IP Nonsense_Mutation p.E507* 0.44 TCGA-49-AARO-01 12 20890194 20890194 T A SLCO1C1 Missense_Mutation p.S512R 0.55 tolerated(0.12) benign(0.024) TCGA-49-AARO-01 12 22040788 22040797 AAAGGAAGCG - ABCC9 Frame_Shift_Del p.S625Lfs*15 0.36 TCGA-49-AARO-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.37 deleterious(0.02) possibly_damaging(0.773) TCGA-49-AARO-01 12 29920864 29920864 C G TMTC1 Missense_Mutation p.L149F 0.42 deleterious(0) possibly_damaging(0.607) TCGA-49-AARO-01 12 2994681 2994681 A T RHNO1 Missense_Mutation p.H50L 0.50 tolerated(0.08) benign(0.164) TCGA-49-AARO-01 12 34175705 34175705 G T ALG10 Missense_Mutation p.Q57H 0.39 deleterious(0.01) benign(0.042) TCGA-49-AARO-01 12 34175706 34175706 G T ALG10 Splice_Site p.X57_splice 0.38 TCGA-49-AARO-01 12 41408096 41408096 G T CNTN1 Missense_Mutation p.W727L 0.15 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 12 42854013 42854013 C A PRICKLE1 Missense_Mutation p.K698N 0.20 tolerated(0.07) benign(0.047) TCGA-49-AARO-01 12 43777614 43777614 C T ADAMTS20 Missense_Mutation p.R1540K 0.19 deleterious(0.03) benign(0.208) TCGA-49-AARO-01 12 4460439 4460439 G T C12orf5 Missense_Mutation p.G93W 0.38 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 12 49391281 49391281 C G DDN Missense_Mutation p.V460L 0.10 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-49-AARO-01 12 50052318 50052318 C A FMNL3 Missense_Mutation p.W171L 0.19 tolerated(0.84) benign(0.019) TCGA-49-AARO-01 12 50616207 50616207 C A LIMA1 Missense_Mutation p.W76L 0.24 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 12 51865297 51865297 G T SLC4A8 Missense_Mutation p.D629Y 0.11 deleterious(0) probably_damaging(0.985) TCGA-49-AARO-01 12 52162959 52162959 G T SCN8A Missense_Mutation p.G1071V 0.29 deleterious(0.02) probably_damaging(0.996) TCGA-49-AARO-01 12 52699110 52699110 C A KRT86 Silent p.I274I 0.23 TCGA-49-AARO-01 12 53085746 53085746 C A KRT77 Nonsense_Mutation p.E480* 0.19 TCGA-49-AARO-01 12 57409505 57409505 G T TAC3 Missense_Mutation p.P26Q 0.41 deleterious(0.03) possibly_damaging(0.726) TCGA-49-AARO-01 12 57501494 57501494 C A STAT6 Missense_Mutation p.C50F 0.13 tolerated(0.38) benign(0.072) TCGA-49-AARO-01 12 57627568 57627568 G T SHMT2 Missense_Mutation p.R387L 0.11 deleterious(0) probably_damaging(0.98) TCGA-49-AARO-01 12 57859660 57859660 T A GLI1 Silent p.R238R 0.08 TCGA-49-AARO-01 12 57994151 57994151 G C PIP4K2C Missense_Mutation p.K248N 0.05 tolerated(0.37) benign(0.009) TCGA-49-AARO-01 12 58014233 58014233 C T SLC26A10 Missense_Mutation p.T77I 0.69 tolerated(0.07) probably_damaging(0.999) TCGA-49-AARO-01 12 58158823 58158823 C T CYP27B1 Missense_Mutation p.C254Y 0.64 deleterious(0.02) benign(0.133) TCGA-49-AARO-01 12 6128286 6128286 G T VWF Missense_Mutation p.P1433H 0.52 deleterious(0) probably_damaging(0.946) TCGA-49-AARO-01 12 63954383 63954383 G T DPY19L2 Missense_Mutation p.P729H 0.31 deleterious(0.04) possibly_damaging(0.895) TCGA-49-AARO-01 12 72372775 72372775 C G TPH2 Missense_Mutation p.S283R 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-49-AARO-01 12 72771826 72771826 G T TRHDE Missense_Mutation p.A369S 0.17 deleterious(0.02) probably_damaging(1) TCGA-49-AARO-01 12 78444786 78444786 G T NAV3 Missense_Mutation p.R792M 0.16 deleterious(0) possibly_damaging(0.878) TCGA-49-AARO-01 12 88586466 88586466 G C TMTC3 Missense_Mutation p.D598H 0.13 deleterious(0) probably_damaging(0.946) TCGA-49-AARO-01 12 91357856 91357856 C A EPYC 3'UTR 0.33 TCGA-49-AARO-01 12 95877025 95877025 G T METAP2 Missense_Mutation p.K98N 0.27 deleterious(0.01) benign(0.054) TCGA-49-AARO-01 12 99793424 99793424 C G ANKS1B Missense_Mutation p.G581R 0.17 tolerated(0.22) benign(0.101) TCGA-49-AARO-01 13 114202632 114202632 G T TMCO3 Silent p.A595A 0.13 TCGA-49-AARO-01 13 20010387 20010387 C A TPTE2 Missense_Mutation p.Q365H 0.16 deleterious(0.01) benign(0.307) TCGA-49-AARO-01 13 20763640 20763640 G A GJB2 Silent p.V27V 0.19 TCGA-49-AARO-01 13 23929381 23929381 C A SACS Missense_Mutation p.S457I 0.13 benign(0.048) TCGA-49-AARO-01 13 25272866 25272866 G T ATP12A Missense_Mutation p.R534L 0.21 deleterious(0) benign(0.392) TCGA-49-AARO-01 13 28626759 28626759 C A FLT3 Missense_Mutation p.Q179H 0.09 tolerated(0.11) benign(0.256) TCGA-49-AARO-01 13 41768143 41768143 C T KBTBD7 Missense_Mutation p.C84Y 0.08 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 13 41949584 41949584 G T NAA16 Missense_Mutation p.G814V 0.09 deleterious(0) probably_damaging(0.987) TCGA-49-AARO-01 13 46543404 46543404 C A ZC3H13 Missense_Mutation p.S1092I 0.18 unknown(0) TCGA-49-AARO-01 13 49841802 49841802 G T CDADC1 Missense_Mutation p.V203L 0.14 deleterious(0.04) benign(0.019) TCGA-49-AARO-01 13 84454657 84454657 C A SLITRK1 Missense_Mutation p.S329I 0.08 tolerated(0.11) benign(0.01) TCGA-49-AARO-01 13 84455169 84455169 C A SLITRK1 Silent p.V158V 0.20 TCGA-49-AARO-01 13 86368624 86368624 A T SLITRK6 Missense_Mutation p.S674T 0.14 tolerated(0.35) benign(0.001) TCGA-49-AARO-01 14 104381413 104381413 G A C14orf2 Silent p.I55I 0.13 TCGA-49-AARO-01 14 104561903 104561903 C A ASPG Silent p.I113I 0.21 TCGA-49-AARO-01 14 105407802 105407802 A T AHNAK2 Silent p.T4662T 0.14 TCGA-49-AARO-01 14 105408332 105408332 C A AHNAK2 Missense_Mutation p.V4486L 0.11 benign(0.029) TCGA-49-AARO-01 14 105410984 105410984 G T AHNAK2 Missense_Mutation p.P3602T 0.32 possibly_damaging(0.803) TCGA-49-AARO-01 14 105411416 105411416 C T AHNAK2 Missense_Mutation p.D3458N 0.09 benign(0.412) TCGA-49-AARO-01 14 106204086 106204086 G T IGHG1 3'UTR 0.21 TCGA-49-AARO-01 14 106610340 106610340 C T IGHV3-15 Silent p.E110E 0.21 TCGA-49-AARO-01 14 106733292 106733292 C T IGHV1-24 Missense_Mutation p.G68E 0.05 deleterious(0.02) possibly_damaging(0.798) TCGA-49-AARO-01 14 106757730 106757730 C T IGHV2-26 Missense_Mutation p.D93N 0.32 deleterious(0.03) benign(0.053) TCGA-49-AARO-01 14 106757731 106757731 C A IGHV2-26 Missense_Mutation p.K92N 0.32 deleterious(0.01) probably_damaging(0.993) TCGA-49-AARO-01 14 21109653 21109653 A T OR6S1 Silent p.G66G 0.07 TCGA-49-AARO-01 14 22446817 22446817 T - TRAV8-6 5'UTR 0.16 TCGA-49-AARO-01 14 33014557 33014557 G T AKAP6 Missense_Mutation p.S233I 0.07 deleterious(0.04) probably_damaging(0.997) TCGA-49-AARO-01 14 35492230 35492230 A G SRP54 Missense_Mutation p.Y424C 0.11 deleterious(0) probably_damaging(0.972) TCGA-49-AARO-01 14 44974725 44974725 G C FSCB Missense_Mutation p.A489G 0.27 tolerated(0.19) possibly_damaging(0.866) TCGA-49-AARO-01 14 51492033 51492033 C T TRIM9 Missense_Mutation p.E290K 0.34 tolerated(0.17) benign(0.028) TCGA-49-AARO-01 14 53331119 53331119 C A FERMT2 Missense_Mutation p.Q534H 0.17 deleterious(0) probably_damaging(0.996) TCGA-49-AARO-01 14 55818624 55818624 T A FBXO34 Missense_Mutation p.S506T 0.12 tolerated(0.15) benign(0.035) TCGA-49-AARO-01 14 55890905 55890905 G T TBPL2 Silent p.I341I 0.28 TCGA-49-AARO-01 14 61115455 61115455 C A SIX1 Silent p.P151P 0.18 TCGA-49-AARO-01 14 65041276 65041276 G C PPP1R36 Missense_Mutation p.V213L 0.19 tolerated(0.16) benign(0.001) TCGA-49-AARO-01 14 66200057 66200058 TC - FUT8 Frame_Shift_Del p.Q459Gfs*18 0.10 TCGA-49-AARO-01 14 74978023 74978023 A T LTBP2 Missense_Mutation p.C985S 0.27 deleterious(0) probably_damaging(0.999) TCGA-49-AARO-01 14 80668628 80668628 G A DIO2 3'Flank 0.21 TCGA-49-AARO-01 14 90398938 90398938 C A EFCAB11 Missense_Mutation p.R84M 0.38 tolerated(0.09) benign(0.401) TCGA-49-AARO-01 14 94067028 94067028 C A UNC79 Missense_Mutation p.S985R 0.38 deleterious(0) probably_damaging(0.997) TCGA-49-AARO-01 15 101114126 101114126 C A LINS Nonsense_Mutation p.G318* 0.16 TCGA-49-AARO-01 15 22368930 22368930 G T OR4M2 Missense_Mutation p.A119S 0.04 deleterious(0.01) probably_damaging(0.997) TCGA-49-AARO-01 15 25322229 25322229 T A SNORD116-12 RNA 0.20 TCGA-49-AARO-01 15 25324108 25324108 G T SNORD116-12 3'Flank 0.29 TCGA-49-AARO-01 15 25465672 25465672 C A SNORD115-27 RNA 0.16 TCGA-49-AARO-01 15 26026197 26026197 C A ATP10A Missense_Mutation p.R208L 0.07 deleterious(0.01) benign(0.039) TCGA-49-AARO-01 15 27772585 27772585 C G GABRG3 Missense_Mutation p.T291S 0.09 tolerated(0.06) probably_damaging(0.998) TCGA-49-AARO-01 15 31776669 31776669 C A OTUD7A Missense_Mutation p.G537C 0.08 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 15 34080526 34080526 G A RYR3 Missense_Mutation p.E3233K 0.21 probably_damaging(0.999) TCGA-49-AARO-01 15 34080646 34080646 G T RYR3 Missense_Mutation p.V3273L 0.20 probably_damaging(0.998) TCGA-49-AARO-01 15 41857299 41857299 G T TYRO3 Missense_Mutation p.G248V 0.16 deleterious(0) probably_damaging(0.981) TCGA-49-AARO-01 15 56735874 56735874 G T MNS1 Missense_Mutation p.Q289K 0.09 tolerated(0.66) benign(0.047) TCGA-49-AARO-01 15 58306089 58306089 T A ALDH1A2 Silent p.A110A 0.10 TCGA-49-AARO-01 15 63915924 63915924 C A HERC1 Missense_Mutation p.Q4537H 0.13 probably_damaging(0.998) TCGA-49-AARO-01 15 68582487 68582487 G T FEM1B Missense_Mutation p.R264L 0.12 deleterious(0) benign(0.119) TCGA-49-AARO-01 15 68583008 68583008 G T FEM1B Missense_Mutation p.D438Y 0.13 deleterious(0) possibly_damaging(0.707) TCGA-49-AARO-01 15 69331268 69331268 C A NOX5 Silent p.I481I 0.11 TCGA-49-AARO-01 15 72699013 72699013 C A TMEM202 Silent p.L136L 0.13 TCGA-49-AARO-01 15 78882721 78882721 G T CHRNA5 Missense_Mutation p.V330L 0.14 deleterious(0.02) benign(0.042) TCGA-49-AARO-01 15 85438218 85438218 G T SLC28A1 Missense_Mutation p.A109S 0.13 deleterious(0.01) benign(0.341) TCGA-49-AARO-01 16 12162913 12162913 G A SNX29 Splice_Site p.X415_splice 0.32 TCGA-49-AARO-01 16 15812249 15812249 G T MYH11 Missense_Mutation p.Q1747K 0.20 possibly_damaging(0.799) TCGA-49-AARO-01 16 16180728 16180728 G T ABCC1 Silent p.R780R 0.28 TCGA-49-AARO-01 16 18839449 18839449 C A SMG1 Missense_Mutation p.M3215I 0.30 tolerated(0.43) benign(0) TCGA-49-AARO-01 16 19058459 19058459 A T TMC7 Missense_Mutation p.N543I 0.24 deleterious(0) probably_damaging(0.999) TCGA-49-AARO-01 16 19725643 19725643 G T KNOP1 Missense_Mutation p.P239T 0.15 deleterious(0.01) benign(0.242) TCGA-49-AARO-01 16 22926382 22926382 C A HS3ST2 Silent p.I201I 0.27 TCGA-49-AARO-01 16 27499944 27499944 C A GTF3C1 Missense_Mutation p.A1148S 0.22 tolerated(1) benign(0.004) TCGA-49-AARO-01 16 29859168 29859168 G T MVP Missense_Mutation p.G847V 0.42 deleterious(0) probably_damaging(0.998) TCGA-49-AARO-01 16 30486636 30486636 G A ITGAL Silent p.V58V 0.31 TCGA-49-AARO-01 16 31309150 31309150 G T ITGAM Missense_Mutation p.G529W 0.10 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 16 49671332 49671332 G A ZNF423 Silent p.I577I 0.21 TCGA-49-AARO-01 16 54966495 54966495 G T IRX5 Missense_Mutation p.G112V 0.12 deleterious(0) probably_damaging(0.975) TCGA-49-AARO-01 16 54966496 54966496 G T IRX5 Silent p.G112G 0.12 TCGA-49-AARO-01 16 56673864 56673864 G A MT1A 3'UTR 0.15 TCGA-49-AARO-01 16 71007810 71007810 C A HYDIN Silent p.L1717L 0.09 TCGA-49-AARO-01 16 72198741 72198741 C A PMFBP1 Silent p.L29L 0.21 TCGA-49-AARO-01 16 72198742 72198742 A G PMFBP1 Missense_Mutation p.L29P 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-49-AARO-01 16 72992706 72992706 C A ZFHX3 Missense_Mutation p.G447C 0.09 possibly_damaging(0.778) TCGA-49-AARO-01 16 72992707 72992707 C A ZFHX3 Silent p.V446V 0.09 TCGA-49-AARO-01 16 76495923 76495923 G T CNTNAP4 Silent p.A395A 0.22 TCGA-49-AARO-01 16 76495924 76495924 G T CNTNAP4 Missense_Mutation p.V396L 0.22 tolerated(0.37) benign(0.308) TCGA-49-AARO-01 16 81077107 81077107 G T ATMIN Missense_Mutation p.G335V 0.18 deleterious(0) probably_damaging(0.972) TCGA-49-AARO-01 16 85946788 85946788 G T IRF8 Nonsense_Mutation p.E167* 0.19 TCGA-49-AARO-01 16 89703004 89703004 C A DPEP1 Missense_Mutation p.S145Y 0.20 deleterious(0) probably_damaging(0.995) TCGA-49-AARO-01 16 9943701 9943701 C A GRIN2A Missense_Mutation p.A414S 0.18 tolerated(0.14) benign(0.128) TCGA-49-AARO-01 17 10222430 10222430 G T MYH13 Missense_Mutation p.Q1139K 0.20 deleterious(0.03) probably_damaging(0.981) TCGA-49-AARO-01 17 10408774 10408774 C A MYH1 Missense_Mutation p.K743N 0.30 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 17 10558311 10558311 C G MYH3 Missense_Mutation p.R24T 0.13 deleterious(0.02) probably_damaging(0.957) TCGA-49-AARO-01 17 20107815 20107815 C T SPECC1 Silent p.S151S 0.16 TCGA-49-AARO-01 17 21201745 21201745 G T MAP2K3 Missense_Mutation p.D24Y 0.12 deleterious(0.03) benign(0.054) TCGA-49-AARO-01 17 26988754 26988754 G A SDF2 Silent p.R47R 0.14 TCGA-49-AARO-01 17 27420358 27420358 C A MYO18A Missense_Mutation p.A1637S 0.18 tolerated(0.77) benign(0.001) TCGA-49-AARO-01 17 27945946 27945946 C A CORO6 Missense_Mutation p.E165D 0.14 deleterious(0.04) possibly_damaging(0.652) TCGA-49-AARO-01 17 29562934 29562934 A T NF1 Splice_Site p.X1291_splice 0.19 TCGA-49-AARO-01 17 32906011 32906011 G T C17orf102 Missense_Mutation p.R97S 0.13 tolerated_low_confidence(0.3) benign(0.021) TCGA-49-AARO-01 17 32955690 32955690 G T TMEM132E Silent p.V279V 0.25 TCGA-49-AARO-01 17 33428238 33428238 C A RAD51L3-RFFL Silent p.L136L 0.13 TCGA-49-AARO-01 17 3839648 3839648 C A ATP2A3 Missense_Mutation p.D813Y 0.30 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 17 39137307 39137307 G A KRT40 Missense_Mutation p.R262C 0.19 deleterious(0) probably_damaging(0.999) TCGA-49-AARO-01 17 39183083 39183083 T C KRTAP1-5 Missense_Mutation p.S109G 0.20 tolerated(0.24) unknown(0) TCGA-49-AARO-01 17 39183129 39183129 A G KRTAP1-5 Silent p.T93T 0.15 TCGA-49-AARO-01 17 39412011 39412011 G C KRTAP9-9 Missense_Mutation p.G125A 0.19 tolerated(0.68) probably_damaging(0.941) TCGA-49-AARO-01 17 39594534 39594534 G T KRT38 Missense_Mutation p.A351D 0.20 deleterious(0) possibly_damaging(0.701) TCGA-49-AARO-01 17 40328262 40328262 C T KCNH4 Silent p.G213G 0.21 TCGA-49-AARO-01 17 4496413 4496413 G A SMTNL2 Missense_Mutation p.G226D 0.25 deleterious(0.02) possibly_damaging(0.611) TCGA-49-AARO-01 17 46622006 46622006 G T HOXB2 Missense_Mutation p.P90T 0.36 tolerated(0.07) benign(0.169) TCGA-49-AARO-01 17 4905834 4905834 C T KIF1C Missense_Mutation p.R169W 0.26 deleterious(0) possibly_damaging(0.608) TCGA-49-AARO-01 17 54558028 54558028 G T ANKFN1 Splice_Site p.X650_splice 0.09 TCGA-49-AARO-01 17 59934533 59934533 C A BRIP1 Missense_Mutation p.A89S 0.29 tolerated(0.41) benign(0.005) TCGA-49-AARO-01 17 60673991 60673991 C T TLK2 Silent p.P502P 0.22 TCGA-49-AARO-01 17 62019291 62019291 G T SCN4A Missense_Mutation p.R1451S 0.11 deleterious(0) possibly_damaging(0.873) TCGA-49-AARO-01 17 65871744 65871744 C T BPTF Intron 0.20 TCGA-49-AARO-01 17 67017992 67017992 C A ABCA9 Missense_Mutation p.R764S 0.26 tolerated(1) benign(0.007) TCGA-49-AARO-01 17 73910940 73910941 - A FBF1 Frame_Shift_Ins p.W886Lfs*12 0.35 TCGA-49-AARO-01 17 7976605 7976605 G T ALOX12B Missense_Mutation p.P596Q 0.23 deleterious(0) probably_damaging(0.959) TCGA-49-AARO-01 17 8167581 8167581 G T PFAS Missense_Mutation p.D615Y 0.25 deleterious(0.02) benign(0.423) TCGA-49-AARO-01 18 14757837 14757837 G T ANKRD30B Missense_Mutation p.C214F 0.26 deleterious(0.02) benign(0.376) TCGA-49-AARO-01 18 19995794 19995794 C A CTAGE1 Missense_Mutation p.V661F 0.20 tolerated(0.11) benign(0.047) TCGA-49-AARO-01 18 28598640 28598640 G T DSC3 Missense_Mutation p.Q357K 0.20 tolerated(0.14) benign(0.004) TCGA-49-AARO-01 18 50985695 50985695 G A DCC Missense_Mutation p.M1162I 0.15 deleterious(0.01) benign(0.309) TCGA-49-AARO-01 18 55992377 55992377 G T NEDD4L Missense_Mutation p.W221C 0.18 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 18 61377553 61377553 C A SERPINB11 Silent p.V42V 0.24 TCGA-49-AARO-01 18 61582809 61582809 C A SERPINB10 Missense_Mutation p.S22Y 0.24 deleterious(0.01) probably_damaging(0.933) TCGA-49-AARO-01 18 63430228 63430228 G A CDH7 Silent p.V50V 0.23 TCGA-49-AARO-01 18 64172329 64172329 C T CDH19 Missense_Mutation p.S680N 0.27 tolerated(0.31) possibly_damaging(0.815) TCGA-49-AARO-01 18 67872415 67872415 C A RTTN Silent p.P56P 0.31 TCGA-49-AARO-01 18 71740795 71740795 C T FBXO15 Silent p.E478E 0.25 TCGA-49-AARO-01 18 7231639 7231639 T G LRRC30 Missense_Mutation p.L168R 0.18 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 18 74962718 74962718 C A GALR1 Missense_Mutation p.L72M 0.13 deleterious(0) possibly_damaging(0.657) TCGA-49-AARO-01 18 76757332 76757332 C T SALL3 3'Flank 0.32 TCGA-49-AARO-01 19 10624552 10624552 G T S1PR5 Missense_Mutation p.T379K 0.22 tolerated(0.13) benign(0.1) TCGA-49-AARO-01 19 12188285 12188285 G T ZNF844 3'UTR 0.19 TCGA-49-AARO-01 19 17837821 17837821 G T MAP1S Missense_Mutation p.R543L 0.30 deleterious(0.02) probably_damaging(0.914) TCGA-49-AARO-01 19 17937542 17937542 C A JAK3 3'UTR 0.34 TCGA-49-AARO-01 19 17937543 17937543 G A JAK3 3'UTR 0.34 TCGA-49-AARO-01 19 22155911 22155911 C A ZNF208 Missense_Mutation p.C642F 0.36 deleterious(0) possibly_damaging(0.884) TCGA-49-AARO-01 19 23159132 23159132 C A ZNF728 Missense_Mutation p.G336V 0.28 deleterious(0) possibly_damaging(0.686) TCGA-49-AARO-01 19 3612339 3612339 T A CACTIN Missense_Mutation p.Q620L 0.30 deleterious(0.04) benign(0.084) TCGA-49-AARO-01 19 36351247 36351247 G T KIRREL2 Missense_Mutation p.G241V 0.20 deleterious(0) probably_damaging(0.997) TCGA-49-AARO-01 19 36430920 36430920 G T LRFN3 Missense_Mutation p.G198V 0.30 deleterious(0) probably_damaging(0.999) TCGA-49-AARO-01 19 37697999 37697999 C A ZNF585B Missense_Mutation p.W5C 0.34 tolerated(0.29) benign(0.171) TCGA-49-AARO-01 19 38932987 38932987 A T RYR1 Splice_Site p.X56_splice 0.25 TCGA-49-AARO-01 19 42793225 42793225 C A CIC Missense_Mutation p.L373I 0.27 probably_damaging(0.918) TCGA-49-AARO-01 19 43383725 43383725 G T PSG1 Silent p.T3T 0.30 TCGA-49-AARO-01 19 43762397 43762397 G T PSG9 Silent p.A400A 0.18 TCGA-49-AARO-01 19 467662 467662 C A ODF3L2 Silent p.R112R 0.23 TCGA-49-AARO-01 19 48876952 48876952 C G SYNGR4 Missense_Mutation p.T91S 0.24 tolerated(0.64) benign(0.005) TCGA-49-AARO-01 19 51192515 51192515 C T SHANK1 Silent p.K662K 0.24 TCGA-49-AARO-01 19 51361308 51361308 G - KLK3 Frame_Shift_Del p.H78Tfs*26 0.26 TCGA-49-AARO-01 19 51452216 51452216 C T KLK5 Missense_Mutation p.R164H 0.19 tolerated(0.61) benign(0) TCGA-49-AARO-01 19 51506313 51506313 C A KLK9 3'UTR 0.17 TCGA-49-AARO-01 19 52272975 52272975 G A FPR2 3'UTR 0.19 TCGA-49-AARO-01 19 56370163 56370163 C T NLRP4 Silent p.S468S 0.34 TCGA-49-AARO-01 19 56703246 56703246 G A ZSCAN5B Silent p.P187P 0.39 TCGA-49-AARO-01 19 58048968 58048968 A T ZNF549 Missense_Mutation p.Q199L 0.21 deleterious(0.02) benign(0.034) TCGA-49-AARO-01 19 58153660 58153660 G T ZNF211 3'UTR 0.33 TCGA-49-AARO-01 19 58724243 58724243 C G ZNF274 Missense_Mutation p.Q565E 0.12 tolerated(1) benign(0.003) TCGA-49-AARO-01 19 8974018 8974018 G T MUC16 Missense_Mutation p.P14218H 0.23 probably_damaging(0.998) TCGA-49-AARO-01 19 9072291 9072291 G T MUC16 Missense_Mutation p.P5052H 0.21 unknown(0) TCGA-49-AARO-01 19 9325179 9325179 G T OR7D4 Missense_Mutation p.T112N 0.24 tolerated(1) benign(0) TCGA-49-AARO-01 1 103427779 103427779 C A COL11A1 Missense_Mutation p.A1023S 0.12 unknown(0) TCGA-49-AARO-01 1 11008232 11008232 C A C1orf127 Missense_Mutation p.G654W 0.28 deleterious(0) probably_damaging(0.938) TCGA-49-AARO-01 1 110738253 110738253 A C SLC6A17 Missense_Mutation p.Q513P 0.18 deleterious(0.01) probably_damaging(0.982) TCGA-49-AARO-01 1 111998716 111998716 G T ATP5F1 Missense_Mutation p.V78L 0.12 tolerated(0.13) benign(0.053) TCGA-49-AARO-01 1 115165646 115165646 T A DENND2C Nonsense_Mutation p.K340* 0.11 TCGA-49-AARO-01 1 1179485 1179485 T C FAM132A Missense_Mutation p.E127G 0.33 tolerated(0.27) benign(0.041) TCGA-49-AARO-01 1 12336702 12336702 G T VPS13D Missense_Mutation p.L1019F 0.15 probably_damaging(0.996) TCGA-49-AARO-01 1 145609281 145609281 T C POLR3C Missense_Mutation p.E19G 0.20 deleterious(0) probably_damaging(0.954) TCGA-49-AARO-01 1 152192878 152192878 G T HRNR Missense_Mutation p.H409Q 0.19 unknown(0) TCGA-49-AARO-01 1 152280029 152280029 G T FLG Missense_Mutation p.Q2445K 0.19 possibly_damaging(0.713) TCGA-49-AARO-01 1 152285878 152285878 G T FLG Nonsense_Mutation p.S495* 0.17 TCGA-49-AARO-01 1 152648847 152648847 G T LCE2C 3'UTR 0.18 TCGA-49-AARO-01 1 153043229 153043229 G T SPRR2B Silent p.P29P 0.17 TCGA-49-AARO-01 1 153409620 153409620 C A S100A7L2 Nonsense_Mutation p.E85* 0.21 TCGA-49-AARO-01 1 153973529 153973529 G T NUP210L Missense_Mutation p.S1730Y 0.14 deleterious(0.02) benign(0.299) TCGA-49-AARO-01 1 155451133 155451133 C A ASH1L Nonsense_Mutation p.E510* 0.21 TCGA-49-AARO-01 1 155838183 155838183 G T SYT11 Missense_Mutation p.E154D 0.22 tolerated(0.39) benign(0.001) TCGA-49-AARO-01 1 157803263 157803263 C A CD5L Missense_Mutation p.C253F 0.11 deleterious(0) probably_damaging(0.997) TCGA-49-AARO-01 1 158908955 158908955 G T PYHIN1 Missense_Mutation p.G166V 0.12 tolerated(0.12) benign(0.012) TCGA-49-AARO-01 1 160518112 160518112 C T CD84 Splice_Site p.X325_splice 0.16 TCGA-49-AARO-01 1 160523936 160523936 C A CD84 Missense_Mutation p.R130L 0.12 deleterious(0.01) possibly_damaging(0.53) TCGA-49-AARO-01 1 160793385 160793385 T C LY9 Silent p.T543T 0.20 TCGA-49-AARO-01 1 161561184 161561184 C A FCGR2C 5'Flank 0.19 TCGA-49-AARO-01 1 16461053 16461053 C G EPHA2 Missense_Mutation p.G531A 0.22 tolerated(0.51) benign(0.003) TCGA-49-AARO-01 1 168513204 168513204 G T XCL2 5'UTR 0.12 TCGA-49-AARO-01 1 16902861 16902861 T G NBPF1 Missense_Mutation p.T674P 0.02 deleterious(0) probably_damaging(0.996) TCGA-49-AARO-01 1 169390765 169390765 G T CCDC181 Missense_Mutation p.P302T 0.18 deleterious(0) probably_damaging(0.977) TCGA-49-AARO-01 1 169565253 169565253 C A SELP Missense_Mutation p.G671C 0.18 deleterious(0.04) probably_damaging(0.967) TCGA-49-AARO-01 1 170695537 170695537 G T PRRX1 Silent p.P198P 0.24 TCGA-49-AARO-01 1 171176891 171176891 G T FMO2 Missense_Mutation p.M406I 0.17 tolerated(0.22) benign(0.076) TCGA-49-AARO-01 1 171765746 171765746 G T METTL13 Silent p.L650L 0.21 TCGA-49-AARO-01 1 17405881 17405881 C G PADI2 Missense_Mutation p.E396D 0.18 tolerated(0.18) possibly_damaging(0.643) TCGA-49-AARO-01 1 17531697 17531697 G C PADI1 5'UTR 0.31 TCGA-49-AARO-01 1 176526148 176526148 G T PAPPA2 Missense_Mutation p.R230S 0.15 tolerated_low_confidence(0.18) benign(0.039) TCGA-49-AARO-01 1 179502945 179502945 C A AXDND1 Missense_Mutation p.Q911K 0.16 tolerated(0.45) benign(0) TCGA-49-AARO-01 1 180217446 180217446 C A LHX4 Missense_Mutation p.Q35K 0.17 tolerated(0.09) benign(0.036) TCGA-49-AARO-01 1 181003155 181003155 G T MR1 Silent p.L4L 0.32 TCGA-49-AARO-01 1 182026770 182026770 G T ZNF648 Missense_Mutation p.L126I 0.18 tolerated(0.06) benign(0.176) TCGA-49-AARO-01 1 192128440 192128440 C A RGS18 Silent p.A70A 0.23 TCGA-49-AARO-01 1 192335158 192335158 G T RGS21 Missense_Mutation p.K121N 0.14 tolerated(0.16) benign(0.14) TCGA-49-AARO-01 1 192335159 192335159 G T RGS21 Missense_Mutation p.D122Y 0.14 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 1 200080400 200080400 A T NR5A2 Missense_Mutation p.Q394L 0.23 deleterious(0.02) probably_damaging(0.965) TCGA-49-AARO-01 1 203693028 203693028 G T ATP2B4 Missense_Mutation p.G1015V 0.23 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 1 204006309 204006309 C G LINC00303 Intron 0.29 TCGA-49-AARO-01 1 215821964 215821964 A T USH2A Missense_Mutation p.S4830T 0.15 benign(0.222) TCGA-49-AARO-01 1 22211324 22211324 G A HSPG2 Silent p.A481A 0.21 TCGA-49-AARO-01 1 232575243 232575243 C G SIPA1L2 Splice_Site p.X1215_splice 0.09 TCGA-49-AARO-01 1 232651115 232651115 C A SIPA1L2 5'UTR 0.17 TCGA-49-AARO-01 1 237788978 237788978 G T RYR2 Missense_Mutation p.D2014Y 0.08 benign(0.396) TCGA-49-AARO-01 1 237947774 237947774 C A RYR2 Silent p.T4254T 0.14 TCGA-49-AARO-01 1 238050752 238050752 A C ZP4 Missense_Mutation p.S221R 0.13 tolerated(0.09) benign(0.048) TCGA-49-AARO-01 1 24189637 24189637 C A FUCA1 Missense_Mutation p.D217Y 0.29 deleterious(0.01) possibly_damaging(0.907) TCGA-49-AARO-01 1 242042500 242042500 A T EXO1 Missense_Mutation p.K655M 0.28 deleterious(0.02) benign(0.103) TCGA-49-AARO-01 1 24408559 24408559 G T MYOM3 Missense_Mutation p.Q738K 0.19 tolerated(0.72) probably_damaging(0.976) TCGA-49-AARO-01 1 247695143 247695143 C A OR2C3 Missense_Mutation p.R224L 0.28 tolerated(0.09) benign(0.003) TCGA-49-AARO-01 1 247875599 247875599 G C OR6F1 Missense_Mutation p.F153L 0.18 deleterious(0.03) possibly_damaging(0.84) TCGA-49-AARO-01 1 248112203 248112203 G T OR2L8 Missense_Mutation p.G15V 0.20 deleterious(0) probably_damaging(0.999) TCGA-49-AARO-01 1 248308712 248308712 G T OR2M5 Missense_Mutation p.G88V 0.17 deleterious(0.02) benign(0.323) TCGA-49-AARO-01 1 248524915 248524915 T A OR2T4 Silent p.T11T 0.17 TCGA-49-AARO-01 1 26883575 26883575 G T RPS6KA1 Silent p.T365T 0.14 TCGA-49-AARO-01 1 27105934 27105935 GG T ARID1A Frame_Shift_Del p.G1849Wfs*34 0.24 TCGA-49-AARO-01 1 32687909 32687909 C A TMEM234 Silent p.L5L 0.12 TCGA-49-AARO-01 1 32796465 32796465 G T HDAC1 Missense_Mutation p.W312L 0.12 deleterious(0.01) probably_damaging(1) TCGA-49-AARO-01 1 33354851 33354851 C A HPCA Silent p.R118R 0.36 TCGA-49-AARO-01 1 33790549 33790549 C A PHC2 Missense_Mutation p.D832Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-49-AARO-01 1 33985165 33985165 C G CSMD2 Missense_Mutation p.A3473P 0.18 deleterious(0) possibly_damaging(0.789) TCGA-49-AARO-01 1 35332684 35332684 G T DLGAP3 Missense_Mutation p.L896I 0.21 tolerated(0.24) probably_damaging(0.992) TCGA-49-AARO-01 1 39847758 39847758 G T MACF1 Missense_Mutation p.M2532I 0.14 probably_damaging(0.991) TCGA-49-AARO-01 1 43853291 43853291 C A MED8 Missense_Mutation p.L51F 0.15 deleterious(0) probably_damaging(0.992) TCGA-49-AARO-01 1 44422231 44422231 G T IPO13 Splice_Site p.X321_splice 0.20 TCGA-49-AARO-01 1 44595475 44595475 C A KLF17 Missense_Mutation p.P178T 0.10 tolerated(0.09) possibly_damaging(0.835) TCGA-49-AARO-01 1 44596262 44596262 G - KLF17 Frame_Shift_Del p.V336Yfs*18 0.26 TCGA-49-AARO-01 1 46769466 46769466 C A UQCRH Missense_Mutation p.L10I 0.17 tolerated(0.28) benign(0.124) TCGA-49-AARO-01 1 57257866 57257866 T C C1orf168 Missense_Mutation p.H207R 0.22 tolerated(0.36) benign(0) TCGA-49-AARO-01 1 6007171 6007171 T C NPHP4 Missense_Mutation p.D371G 0.19 tolerated(0.21) benign(0.017) TCGA-49-AARO-01 1 70541888 70541888 G C LRRC7 Missense_Mutation p.Q1415H 0.23 deleterious(0.01) probably_damaging(0.99) TCGA-49-AARO-01 1 74507384 74507384 G A LRRIQ3 Nonsense_Mutation p.Q411* 0.04 TCGA-49-AARO-01 1 77510248 77510248 C A ST6GALNAC5 Missense_Mutation p.H207Q 0.08 benign(0.05) TCGA-49-AARO-01 1 79357216 79357216 G C ELTD1 Missense_Mutation p.S668C 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-49-AARO-01 1 85331242 85331242 G T LPAR3 Missense_Mutation p.L188I 0.30 deleterious(0) possibly_damaging(0.772) TCGA-49-AARO-01 1 86814492 86814492 C T ODF2L 3'UTR 0.10 TCGA-49-AARO-01 1 89453977 89453977 C A CCBL2 Missense_Mutation p.K19N 0.26 tolerated(0.22) benign(0.1) TCGA-49-AARO-01 1 90179086 90179086 G T LRRC8C Silent p.L319L 0.10 TCGA-49-AARO-01 1 93091354 93091354 C A EVI5 Missense_Mutation p.W539C 0.28 deleterious(0) probably_damaging(0.948) TCGA-49-AARO-01 1 93812398 93812398 A G DR1 Missense_Mutation p.I66V 0.15 deleterious(0.02) probably_damaging(0.958) TCGA-49-AARO-01 1 99772401 99772401 G T LPPR4 Missense_Mutation p.E709D 0.22 tolerated(0.12) benign(0.039) TCGA-49-AARO-01 20 18165331 18165331 G C CSRP2BP Missense_Mutation p.M690I 0.12 deleterious(0.01) probably_damaging(0.936) TCGA-49-AARO-01 20 18794945 18794945 C A SCP2D1 3'UTR 0.18 TCGA-49-AARO-01 20 1963632 1963632 G T PDYN Silent p.T33T 0.21 TCGA-49-AARO-01 20 22562448 22562448 C A FOXA2 3'UTR 0.13 TCGA-49-AARO-01 20 30616832 30616832 A T CCM2L Silent p.T368T 0.10 TCGA-49-AARO-01 20 31825910 31825910 C A BPIFA1 Missense_Mutation p.N70K 0.18 tolerated(0.2) benign(0.075) TCGA-49-AARO-01 20 31825911 31825911 C A BPIFA1 Missense_Mutation p.L71I 0.18 tolerated(0.08) possibly_damaging(0.463) TCGA-49-AARO-01 20 37630381 37630381 G T DHX35 Silent p.R217R 0.14 TCGA-49-AARO-01 20 42204948 42204948 G T SGK2 Missense_Mutation p.A320S 0.24 tolerated(0.48) benign(0.05) TCGA-49-AARO-01 20 45702836 45702836 C A EYA2 Missense_Mutation p.P175T 0.18 tolerated(0.33) benign(0.087) TCGA-49-AARO-01 20 47342888 47342888 G T PREX1 Missense_Mutation p.P187H 0.27 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 20 51871983 51871983 C A TSHZ2 Missense_Mutation p.S662R 0.15 tolerated(0.42) benign(0.026) TCGA-49-AARO-01 20 55093327 55093327 G T RTFDC1 3'UTR 0.14 TCGA-49-AARO-01 20 56137175 56137175 G T PCK1 Missense_Mutation p.K91N 0.19 deleterious(0) probably_damaging(0.914) TCGA-49-AARO-01 20 56138620 56138620 G T PCK1 Splice_Site p.X267_splice 0.08 TCGA-49-AARO-01 20 57829668 57829668 C G ZNF831 Missense_Mutation p.P1635R 0.09 deleterious(0) possibly_damaging(0.864) TCGA-49-AARO-01 20 60551348 60551348 C A TAF4 Missense_Mutation p.G1045V 0.13 probably_damaging(0.999) TCGA-49-AARO-01 20 62871250 62871250 G T MYT1 Silent p.P1077P 0.11 TCGA-49-AARO-01 21 11039340 11039340 C G BAGE2 RNA 0.05 TCGA-49-AARO-01 21 11098776 11098776 C A BAGE2 RNA 0.14 TCGA-49-AARO-01 21 19725324 19725324 C A TMPRSS15 Missense_Mutation p.W356L 0.12 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 21 28296654 28296654 T A ADAMTS5 Silent p.T837T 0.22 TCGA-49-AARO-01 21 37785503 37785503 G T CHAF1B Silent p.P461P 0.14 TCGA-49-AARO-01 21 38538542 38538542 G T TTC3 Missense_Mutation p.L1342F 0.17 tolerated(0.08) possibly_damaging(0.541) TCGA-49-AARO-01 21 41173187 41173187 A T IGSF5 Splice_Site p.X377_splice 0.28 TCGA-49-AARO-01 21 45050336 45050336 C G HSF2BP Splice_Site p.X148_splice 0.18 TCGA-49-AARO-01 21 46320240 46320240 C T ITGB2 Missense_Mutation p.E298K 0.20 tolerated(0.08) benign(0.079) TCGA-49-AARO-01 22 17073357 17073357 C T CCT8L2 Silent p.E28E 0.16 TCGA-49-AARO-01 22 23523754 23523754 C G BCR Missense_Mutation p.L203V 0.32 deleterious_low_confidence(0) benign(0.364) TCGA-49-AARO-01 22 26422647 26422647 C - MYO18B Frame_Shift_Del p.P2237Rfs*36 0.25 TCGA-49-AARO-01 22 38121915 38121915 G T TRIOBP Missense_Mutation p.D1118Y 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-49-AARO-01 22 38620913 38620913 C A TMEM184B Missense_Mutation p.E287D 0.30 tolerated(0.2) benign(0.044) TCGA-49-AARO-01 22 44064837 44064837 C A EFCAB6 Missense_Mutation p.V577F 0.31 tolerated(0.14) benign(0.223) TCGA-49-AARO-01 2 10098915 10098915 G T GRHL1 Missense_Mutation p.V70F 0.16 deleterious(0) probably_damaging(0.998) TCGA-49-AARO-01 2 10140873 10140873 G T GRHL1 3'UTR 0.12 TCGA-49-AARO-01 2 102851454 102851454 G T IL1RL2 Silent p.L465L 0.10 TCGA-49-AARO-01 2 102851498 102851498 G T IL1RL2 Missense_Mutation p.G480V 0.25 deleterious(0) probably_damaging(0.992) TCGA-49-AARO-01 2 111399367 111399367 G A BUB1 Missense_Mutation p.A826V 0.14 deleterious(0) possibly_damaging(0.827) TCGA-49-AARO-01 2 11347957 11347958 TG - ROCK2 Frame_Shift_Del p.Q815Tfs*3 0.09 TCGA-49-AARO-01 2 113765499 113765499 G T IL36A Nonsense_Mutation p.E119* 0.18 TCGA-49-AARO-01 2 130832723 130832723 G T POTEF Silent p.G774G 0.15 TCGA-49-AARO-01 2 131976305 131976305 G T POTEE Missense_Mutation p.R110S 0.11 deleterious_low_confidence(0.03) benign(0.227) TCGA-49-AARO-01 2 132288181 132288181 G T CCDC74A Missense_Mutation p.A109S 0.24 tolerated(0.78) benign(0.039) TCGA-49-AARO-01 2 137814508 137814508 C G THSD7B Missense_Mutation p.L220V 0.13 deleterious(0) possibly_damaging(0.87) TCGA-49-AARO-01 2 138169367 138169367 G A THSD7B Missense_Mutation p.G962S 0.11 deleterious(0) probably_damaging(0.931) TCGA-49-AARO-01 2 148733470 148733470 C A ORC4 Splice_Site p.X19_splice 0.12 TCGA-49-AARO-01 2 152108007 152108007 T A RBM43 Nonsense_Mutation p.R163* 0.15 TCGA-49-AARO-01 2 152108166 152108166 C A RBM43 Missense_Mutation p.V110L 0.10 deleterious(0.03) probably_damaging(0.957) TCGA-49-AARO-01 2 152988672 152988672 T A STAM2 Missense_Mutation p.Q327H 0.10 tolerated(0.68) possibly_damaging(0.572) TCGA-49-AARO-01 2 155115534 155115534 G C GALNT13 Missense_Mutation p.R286S 0.07 deleterious(0.02) possibly_damaging(0.819) TCGA-49-AARO-01 2 160028649 160028649 G T TANC1 Missense_Mutation p.D457Y 0.14 deleterious(0) possibly_damaging(0.806) TCGA-49-AARO-01 2 162696377 162696377 C A SLC4A10 Missense_Mutation p.T119K 0.14 deleterious(0) possibly_damaging(0.664) TCGA-49-AARO-01 2 164467260 164467260 C A FIGN Missense_Mutation p.R361L 0.18 deleterious(0.02) benign(0.304) TCGA-49-AARO-01 2 164468067 164468067 G A FIGN Missense_Mutation p.S92L 0.09 tolerated(0.09) benign(0.012) TCGA-49-AARO-01 2 165765213 165765213 G T SLC38A11 Silent p.V288V 0.10 TCGA-49-AARO-01 2 165947310 165947310 G T SCN3A Missense_Mutation p.L1785M 0.27 deleterious(0) probably_damaging(0.999) TCGA-49-AARO-01 2 170113642 170113642 G A LRP2 Silent p.I877I 0.30 TCGA-49-AARO-01 2 179473989 179473989 T A TTN Nonsense_Mutation p.K17350* 0.24 TCGA-49-AARO-01 2 179611304 179611304 G A TTN Intron 0.13 TCGA-49-AARO-01 2 179659144 179659144 G T TTN Silent p.I460I 0.11 TCGA-49-AARO-01 2 182339909 182339909 T A ITGA4 Missense_Mutation p.N150K 0.10 deleterious(0) probably_damaging(0.998) TCGA-49-AARO-01 2 182787105 182787105 T C SSFA2 Missense_Mutation p.V1214A 0.25 tolerated(0.07) benign(0.015) TCGA-49-AARO-01 2 189873752 189873752 G A COL3A1 Missense_Mutation p.G1210S 0.13 unknown(0) TCGA-49-AARO-01 2 200213442 200213442 C A SATB2 Silent p.V385V 0.11 TCGA-49-AARO-01 2 210561434 210561434 C G MAP2 Missense_Mutation p.P1450R 0.16 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 2 210561655 210561655 G T MAP2 Missense_Mutation p.A1468S 0.14 deleterious(0.02) possibly_damaging(0.793) TCGA-49-AARO-01 2 211471595 211471595 A T CPS1 Missense_Mutation p.M714L 0.11 tolerated(0.49) benign(0) TCGA-49-AARO-01 2 21230918 21230918 G T APOB Missense_Mutation p.T2941K 0.18 possibly_damaging(0.543) TCGA-49-AARO-01 2 21252567 21252567 G T APOB Missense_Mutation p.L521M 0.28 benign(0.133) TCGA-49-AARO-01 2 215821474 215821474 G T ABCA12 Nonsense_Mutation p.S2049* 0.13 TCGA-49-AARO-01 2 233677167 233677167 C T GIGYF2 Silent p.I712I 0.22 TCGA-49-AARO-01 2 234916712 234916712 A T TRPM8 Splice_Site p.X1077_splice 0.06 TCGA-49-AARO-01 2 30748621 30748621 G T LCLAT1 Silent p.V93V 0.25 TCGA-49-AARO-01 2 32743342 32743342 A G BIRC6 Missense_Mutation p.T3791A 0.29 benign(0.004) TCGA-49-AARO-01 2 37458561 37458561 G A CEBPZ Silent p.G50G 0.24 TCGA-49-AARO-01 2 40405536 40405536 C G SLC8A1 Missense_Mutation p.E636Q 0.17 tolerated(0.66) benign(0.018) TCGA-49-AARO-01 2 44513214 44513214 G T SLC3A1 Missense_Mutation p.R270L 0.22 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 2 45169552 45169552 C A SIX3 Silent p.G103G 0.23 TCGA-49-AARO-01 2 50724510 50724510 C T NRXN1 Missense_Mutation p.G987E 0.20 deleterious(0) probably_damaging(0.999) TCGA-49-AARO-01 2 55750923 55750923 T A CCDC104 Missense_Mutation p.C83S 0.20 deleterious(0) probably_damaging(0.979) TCGA-49-AARO-01 2 58431309 58431309 C A FANCL Missense_Mutation p.A143S 0.19 tolerated(1) benign(0.003) TCGA-49-AARO-01 2 61441763 61441763 C A USP34 Missense_Mutation p.R2705M 0.27 deleterious(0) probably_damaging(0.922) TCGA-49-AARO-01 2 61508311 61508311 C A USP34 Missense_Mutation p.D1689Y 0.11 deleterious(0.01) possibly_damaging(0.459) TCGA-49-AARO-01 2 69207159 69207159 G A GKN1 Missense_Mutation p.G158R 0.16 deleterious(0) probably_damaging(0.982) TCGA-49-AARO-01 2 7160730 7160730 G T RNF144A Missense_Mutation p.C143F 0.12 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 2 76976022 76976022 G T LRRTM4 Silent p.P524P 0.15 TCGA-49-AARO-01 2 77745869 77745869 G T LRRTM4 Missense_Mutation p.Q376K 0.23 tolerated(1) benign(0.001) TCGA-49-AARO-01 2 79253286 79253286 C G REG3G Missense_Mutation p.Q23E 0.18 deleterious(0.01) benign(0.371) TCGA-49-AARO-01 2 79363049 79363049 A T REG1P RNA 0.38 TCGA-49-AARO-01 2 80530698 80530698 C A LRRTM1 Missense_Mutation p.G83C 0.09 tolerated(0.14) probably_damaging(1) TCGA-49-AARO-01 2 95513896 95513896 T A RNU6-1320P 5'Flank 0.14 TCGA-49-AARO-01 2 99697819 99697819 T A TSGA10 Missense_Mutation p.Q218L 0.15 deleterious(0) probably_damaging(0.976) TCGA-49-AARO-01 3 10070308 10070308 G A FANCD2 Splice_Site 0.23 TCGA-49-AARO-01 3 108754256 108754256 C G MORC1 Missense_Mutation p.E464Q 0.09 tolerated(0.31) possibly_damaging(0.827) TCGA-49-AARO-01 3 118647449 118647449 G C IGSF11 Missense_Mutation p.Q111E 0.20 deleterious(0.01) possibly_damaging(0.867) TCGA-49-AARO-01 3 122002535 122002535 T A CASR Missense_Mutation p.D588E 0.40 deleterious(0.02) possibly_damaging(0.852) TCGA-49-AARO-01 3 125702155 125702155 C G ROPN1B Missense_Mutation p.L211V 0.14 deleterious(0.03) probably_damaging(0.998) TCGA-49-AARO-01 3 133557034 133557034 C A RAB6B Silent p.A157A 0.10 TCGA-49-AARO-01 3 135741923 135741923 G C PPP2R3A Intron 0.10 TCGA-49-AARO-01 3 138739163 138739163 G A PRR23B Missense_Mutation p.A114V 0.11 tolerated(0.4) possibly_damaging(0.752) TCGA-49-AARO-01 3 139236456 139236456 G T RBP1 3'UTR 0.32 TCGA-49-AARO-01 3 141292052 141292052 G A RASA2 Missense_Mutation p.E450K 0.24 tolerated(0.1) possibly_damaging(0.656) TCGA-49-AARO-01 3 1418722 1418722 G T CNTN6 Missense_Mutation p.G710V 0.32 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 3 142272239 142272239 C A ATR Missense_Mutation p.A879S 0.14 tolerated(0.07) probably_damaging(0.998) TCGA-49-AARO-01 3 142561763 142561763 C T PCOLCE2 Intron 0.12 TCGA-49-AARO-01 3 147128690 147128690 C A ZIC1 Missense_Mutation p.P264Q 0.13 deleterious(0) probably_damaging(0.996) TCGA-49-AARO-01 3 148601400 148601400 C G CPA3 Missense_Mutation p.S260C 0.19 deleterious(0.01) probably_damaging(0.954) TCGA-49-AARO-01 3 151599081 151599081 C A SUCNR1 Silent p.V250V 0.11 TCGA-49-AARO-01 3 157098952 157098952 T A VEPH1 Missense_Mutation p.S374C 0.12 tolerated(0.07) possibly_damaging(0.469) TCGA-49-AARO-01 3 165491155 165491155 G T BCHE 3'UTR 0.19 TCGA-49-AARO-01 3 165491156 165491156 G T BCHE 3'UTR 0.20 TCGA-49-AARO-01 3 186386754 186386754 G A HRG Missense_Mutation p.D72N 0.07 deleterious(0) benign(0.009) TCGA-49-AARO-01 3 186460019 186460019 C A KNG1 Missense_Mutation p.P612T 0.21 deleterious(0.01) probably_damaging(0.976) TCGA-49-AARO-01 3 186460020 186460020 C A KNG1 Missense_Mutation p.P612Q 0.22 deleterious(0.04) probably_damaging(0.982) TCGA-49-AARO-01 3 190986230 190986230 G T UTS2B Missense_Mutation p.A112D 0.18 deleterious(0) benign(0.148) TCGA-49-AARO-01 3 191087721 191087721 T G CCDC50 Missense_Mutation p.L115R 0.07 deleterious(0.01) possibly_damaging(0.613) TCGA-49-AARO-01 3 194063363 194063363 G T CPN2 Silent p.P23P 0.08 TCGA-49-AARO-01 3 197402348 197402348 C A KIAA0226 Missense_Mutation p.Q895H 0.06 tolerated(0.58) benign(0.42) TCGA-49-AARO-01 3 197444990 197444990 C A KIAA0226 Missense_Mutation p.W26L 0.28 deleterious(0.01) probably_damaging(0.928) TCGA-49-AARO-01 3 35833915 35833915 C A ARPP21 Missense_Mutation p.L693I 0.16 tolerated(0.35) benign(0.211) TCGA-49-AARO-01 3 38126848 38126848 G T DLEC1 Missense_Mutation p.D449Y 0.20 deleterious(0) probably_damaging(0.997) TCGA-49-AARO-01 3 39227718 39227718 C T XIRP1 Silent p.L1073L 0.28 TCGA-49-AARO-01 3 40499402 40499402 G T RPL14 Missense_Mutation p.V9F 0.23 deleterious(0) probably_damaging(0.957) TCGA-49-AARO-01 3 42727168 42727168 C A KLHL40 Missense_Mutation p.Q20K 0.35 deleterious(0) probably_damaging(0.987) TCGA-49-AARO-01 3 46539515 46539515 G T RTP3 5'UTR 0.25 TCGA-49-AARO-01 3 46944872 46944872 C A PTH1R Missense_Mutation p.T503K 0.22 deleterious(0.01) probably_damaging(0.937) TCGA-49-AARO-01 3 48615936 48615936 G A COL7A1 Missense_Mutation p.L1813F 0.27 unknown(0) TCGA-49-AARO-01 3 51752101 51752101 G A GRM2 Silent p.V864V 0.07 TCGA-49-AARO-01 3 52730643 52730643 A T GLT8D1 Missense_Mutation p.I121N 0.15 deleterious(0) possibly_damaging(0.879) TCGA-49-AARO-01 3 52771710 52771710 G C NEK4 Missense_Mutation p.I775M 0.08 deleterious(0.04) possibly_damaging(0.701) TCGA-49-AARO-01 3 77147177 77147177 G C ROBO2 Missense_Mutation p.R41P 0.17 deleterious(0.02) unknown(0) TCGA-49-AARO-01 4 104062166 104062166 C T CENPE Silent p.K1853K 0.10 TCGA-49-AARO-01 4 114195799 114195799 T A ANK2 Silent p.A559A 0.21 TCGA-49-AARO-01 4 122853738 122853738 C A TRPC3 Missense_Mutation p.E225D 0.12 deleterious(0.03) possibly_damaging(0.869) TCGA-49-AARO-01 4 123336614 123336614 C A ADAD1 Missense_Mutation p.P444T 0.13 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 4 153791999 153791999 A T ARFIP1 Silent p.A99A 0.11 TCGA-49-AARO-01 4 167713323 167713323 C A SPOCK3 Missense_Mutation p.S239I 0.17 deleterious(0.02) possibly_damaging(0.616) TCGA-49-AARO-01 4 169433189 169433189 G T PALLD Missense_Mutation p.E178D 0.10 deleterious(0) probably_damaging(0.995) TCGA-49-AARO-01 4 1696560 1696560 C A SLBP Missense_Mutation p.V213L 0.19 tolerated(0.15) benign(0.036) TCGA-49-AARO-01 4 17805462 17805462 G A DCAF16 Silent p.S101S 0.13 TCGA-49-AARO-01 4 183650299 183650299 C T TENM3 Silent p.T850T 0.30 TCGA-49-AARO-01 4 184240922 184240922 A C CLDN22 Missense_Mutation p.D150E 0.33 deleterious(0) probably_damaging(0.999) TCGA-49-AARO-01 4 189068121 189068121 G T TRIML1 Missense_Mutation p.Q334H 0.14 deleterious(0) probably_damaging(0.999) TCGA-49-AARO-01 4 23797471 23797471 C A PPARGC1A Nonsense_Mutation p.E791* 0.13 TCGA-49-AARO-01 4 25013979 25013979 G T LGI2 Missense_Mutation p.F266L 0.14 tolerated(0.14) benign(0.234) TCGA-49-AARO-01 4 26640457 26640457 G T TBC1D19 Splice_Site p.X145_splice 0.38 TCGA-49-AARO-01 4 62812806 62812806 C G LPHN3 Missense_Mutation p.A797G 0.24 deleterious(0.04) benign(0.146) TCGA-49-AARO-01 4 66213787 66213787 C A EPHA5 Missense_Mutation p.E881D 0.28 tolerated(1) benign(0.004) TCGA-49-AARO-01 4 69796292 69796292 C A UGT2A3 Missense_Mutation p.A426S 0.09 deleterious(0.02) possibly_damaging(0.868) TCGA-49-AARO-01 4 70146262 70146262 G T UGT2B28 Missense_Mutation p.G15V 0.25 deleterious(0.04) benign(0.004) TCGA-49-AARO-01 4 70707691 70707691 G T SULT1E1 3'UTR 0.36 TCGA-49-AARO-01 4 74719805 74719805 A T PF4V1 Missense_Mutation p.Y94F 0.14 tolerated(0.18) benign(0.251) TCGA-49-AARO-01 4 85416949 85416949 C A NKX6-1 Missense_Mutation p.R240I 0.12 deleterious(0) unknown(0) TCGA-49-AARO-01 4 90169716 90169716 C A GPRIN3 Missense_Mutation p.G516C 0.18 tolerated(0.11) probably_damaging(0.961) TCGA-49-AARO-01 4 90857752 90857752 A T MMRN1 Missense_Mutation p.K974I 0.25 deleterious(0) probably_damaging(0.955) TCGA-49-AARO-01 5 128351750 128351750 G C SLC27A6 Missense_Mutation p.G381A 0.28 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 5 133536187 133536187 C A PPP2CA Missense_Mutation p.G193C 0.24 deleterious(0) probably_damaging(0.998) TCGA-49-AARO-01 5 140175306 140175306 G T PCDHA2 Nonsense_Mutation p.E253* 0.28 TCGA-49-AARO-01 5 140202522 140202522 C A PCDHA5 Missense_Mutation p.L388I 0.27 tolerated_low_confidence(0.12) possibly_damaging(0.74) TCGA-49-AARO-01 5 140214320 140214320 C A PCDHA7 Missense_Mutation p.H118N 0.22 deleterious_low_confidence(0.03) probably_damaging(0.968) TCGA-49-AARO-01 5 140230448 140230448 T A PCDHA9 Missense_Mutation p.S790T 0.17 tolerated_low_confidence(0.37) benign(0.032) TCGA-49-AARO-01 5 140729951 140729951 G C PCDHGB1 Missense_Mutation p.G42R 0.33 deleterious(0) possibly_damaging(0.827) TCGA-49-AARO-01 5 140730908 140730908 G C PCDHGB1 Missense_Mutation p.V361L 0.38 tolerated(0.14) benign(0.107) TCGA-49-AARO-01 5 140792934 140792934 G T PCDHGA10 Silent p.A64A 0.28 TCGA-49-AARO-01 5 140792935 140792935 G T PCDHGA10 Nonsense_Mutation p.E65* 0.28 TCGA-49-AARO-01 5 142661599 142661599 T C NR3C1 Missense_Mutation p.E731G 0.11 tolerated(0.67) benign(0) TCGA-49-AARO-01 5 149576404 149576404 T A SLC6A7 Missense_Mutation p.F115I 0.19 deleterious(0.02) benign(0.163) TCGA-49-AARO-01 5 154183201 154183201 A T LARP1 Missense_Mutation p.N702Y 0.37 deleterious(0.02) probably_damaging(0.943) TCGA-49-AARO-01 5 176824891 176824891 G - SLC34A1 Frame_Shift_Del p.A509Pfs*34 0.18 TCGA-49-AARO-01 5 179247945 179247945 G T SQSTM1 Silent p.S3S 0.20 TCGA-49-AARO-01 5 182118 182118 G T PLEKHG4B Splice_Site p.X1166_splice 0.09 TCGA-49-AARO-01 5 39203099 39203099 T G FYB Intron 0.29 TCGA-49-AARO-01 5 40691926 40691926 G C PTGER4 Missense_Mutation p.E305Q 0.14 tolerated(0.57) benign(0.016) TCGA-49-AARO-01 5 55082400 55082400 G T DDX4 Missense_Mutation p.G307C 0.23 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 5 55212886 55212886 G T IL31RA Missense_Mutation p.V745L 0.14 deleterious(0.04) benign(0.185) TCGA-49-AARO-01 5 74134855 74134855 C G FAM169A Missense_Mutation p.D85H 0.18 tolerated(0.1) benign(0.43) TCGA-49-AARO-01 6 110146288 110146288 T A FIG4 Intron 0.16 TCGA-49-AARO-01 6 110146290 110146290 G A FIG4 Splice_Site p.X849_splice 0.20 TCGA-49-AARO-01 6 110935680 110935680 A G CDK19 3'UTR 0.20 TCGA-49-AARO-01 6 11768613 11768613 A G ADTRP Silent p.L71L 0.12 TCGA-49-AARO-01 6 127834161 127834161 C A SOGA3 Nonsense_Mutation p.E454* 0.26 TCGA-49-AARO-01 6 129468193 129468193 T G LAMA2 Missense_Mutation p.N303K 0.36 tolerated(1) benign(0.163) TCGA-49-AARO-01 6 132198238 132198238 C A ENPP1 Silent p.P610P 0.20 TCGA-49-AARO-01 6 133094108 133094108 C A SLC18B1 Intron 0.27 TCGA-49-AARO-01 6 151669912 151669912 C A AKAP12 Missense_Mutation p.A129E 0.33 tolerated(0.32) benign(0.005) TCGA-49-AARO-01 6 161134016 161134016 A G PLG Splice_Site p.X136_splice 0.14 TCGA-49-AARO-01 6 165801915 165801915 A C PDE10A Missense_Mutation p.C562G 0.25 deleterious(0.03) probably_damaging(0.987) TCGA-49-AARO-01 6 168434623 168434623 G T KIF25 Nonsense_Mutation p.G77* 0.17 TCGA-49-AARO-01 6 17779825 17779825 T A KIF13A Nonsense_Mutation p.K1313* 0.24 TCGA-49-AARO-01 6 34497246 34497246 A T PACSIN1 Missense_Mutation p.S177C 0.14 deleterious(0) possibly_damaging(0.577) TCGA-49-AARO-01 6 36298008 36298008 G T C6orf222 Missense_Mutation p.P154T 0.13 tolerated(0.25) benign(0) TCGA-49-AARO-01 6 38997956 38997956 A T DNAH8 Missense_Mutation p.T4421S 0.24 benign(0.015) TCGA-49-AARO-01 6 41168755 41168755 C A TREML2 5'UTR 0.19 TCGA-49-AARO-01 6 45399611 45399611 C A RUNX2 Silent p.L145L 0.28 TCGA-49-AARO-01 6 50696689 50696689 C T TFAP2D Missense_Mutation p.P240L 0.17 deleterious(0.03) possibly_damaging(0.53) TCGA-49-AARO-01 6 50811088 50811088 G T TFAP2B Nonsense_Mutation p.E456* 0.17 TCGA-49-AARO-01 6 54735269 54735269 A T FAM83B Silent p.T75T 0.25 TCGA-49-AARO-01 6 55739539 55739539 C A BMP5 Missense_Mutation p.R42I 0.20 deleterious(0) probably_damaging(0.995) TCGA-49-AARO-01 6 56323854 56323854 C A DST Silent p.T5155T 0.25 TCGA-49-AARO-01 6 56347641 56347641 C A DST Missense_Mutation p.S4458I 0.07 probably_damaging(0.981) TCGA-49-AARO-01 6 56376154 56376154 C G DST Missense_Mutation p.K3584N 0.40 probably_damaging(0.992) TCGA-49-AARO-01 6 62887176 62887176 C G KHDRBS2 Missense_Mutation p.E45Q 0.12 deleterious(0.02) benign(0.035) TCGA-49-AARO-01 6 70859937 70859937 G T COL19A1 Silent p.P679P 0.21 TCGA-49-AARO-01 6 84025098 84025098 C A ME1 Missense_Mutation p.R212L 0.16 deleterious(0.02) possibly_damaging(0.545) TCGA-49-AARO-01 6 86324803 86324803 C A SYNCRIP Missense_Mutation p.A515S 0.28 tolerated(0.64) unknown(0) TCGA-49-AARO-01 6 89890179 89890179 G T GABRR1 Silent p.T326T 0.32 TCGA-49-AARO-01 7 100683715 100683715 C A MUC17 Silent p.T3006T 0.17 TCGA-49-AARO-01 7 100683716 100683716 C A MUC17 Missense_Mutation p.L3007I 0.17 possibly_damaging(0.709) TCGA-49-AARO-01 7 107688526 107688526 C A LAMB4 Missense_Mutation p.V1385L 0.16 tolerated(0.44) benign(0.005) TCGA-49-AARO-01 7 111535699 111535699 G A DOCK4 Missense_Mutation p.P519L 0.26 tolerated(0.29) possibly_damaging(0.739) TCGA-49-AARO-01 7 117432177 117432177 C A CTTNBP2 Missense_Mutation p.R358M 0.22 deleterious(0.02) probably_damaging(0.971) TCGA-49-AARO-01 7 129847838 129847838 T A SSMEM1 Missense_Mutation p.W30R 0.17 tolerated(0.69) benign(0) TCGA-49-AARO-01 7 131844251 131844251 T A PLXNA4 Missense_Mutation p.K1547N 0.24 deleterious(0.04) possibly_damaging(0.88) TCGA-49-AARO-01 7 135366290 135366291 GG T SLC13A4 3'UTR 0.24 TCGA-49-AARO-01 7 141539231 141539231 G T PRSS37 Missense_Mutation p.P28H 0.15 deleterious(0) probably_damaging(0.998) TCGA-49-AARO-01 7 141673508 141673508 G T TAS2R38 5'UTR 0.15 TCGA-49-AARO-01 7 141955399 141955399 C A PRSS58 Silent p.L45L 0.21 TCGA-49-AARO-01 7 143573371 143573371 C A FAM115A Missense_Mutation p.D111Y 0.17 deleterious(0) benign(0.126) TCGA-49-AARO-01 7 148801160 148801160 C A ZNF425 Silent p.L601L 0.19 TCGA-49-AARO-01 7 149486283 149486283 A T SSPO RNA 0.13 TCGA-49-AARO-01 7 149522964 149522964 C T SSPO RNA 0.21 TCGA-49-AARO-01 7 150493490 150493490 G A TMEM176B Silent p.S56S 0.24 TCGA-49-AARO-01 7 15240826 15240826 C A AGMO 3'UTR 0.30 TCGA-49-AARO-01 7 158444984 158444984 C A NCAPG2 Splice_Site p.X978_splice 0.14 TCGA-49-AARO-01 7 158444986 158444986 C A NCAPG2 Missense_Mutation p.R978L 0.14 tolerated(0.05) benign(0.003) TCGA-49-AARO-01 7 23826247 23826247 T G STK31 Missense_Mutation p.C799G 0.19 tolerated(0.26) possibly_damaging(0.734) TCGA-49-AARO-01 7 30651710 30651710 A G GARS Splice_Site p.X294_splice 0.26 TCGA-49-AARO-01 7 31124442 31124442 C T ADCYAP1R1 Missense_Mutation p.R177C 0.10 tolerated(0.07) possibly_damaging(0.77) TCGA-49-AARO-01 7 31890303 31890303 T C PDE1C Missense_Mutation p.H328R 0.25 deleterious(0) probably_damaging(0.999) TCGA-49-AARO-01 7 37780562 37780562 C A GPR141 Silent p.V189V 0.12 TCGA-49-AARO-01 7 37780890 37780890 T A GPR141 Missense_Mutation p.W299R 0.15 tolerated_low_confidence(1) benign(0.003) TCGA-49-AARO-01 7 39736353 39736353 A T RALA Missense_Mutation p.L131F 0.12 deleterious(0) possibly_damaging(0.888) TCGA-49-AARO-01 7 43519286 43519286 C T HECW1 Silent p.P1059P 0.29 TCGA-49-AARO-01 7 43548443 43548443 G T HECW1 Intron 0.15 TCGA-49-AARO-01 7 44281311 44281311 C A CAMK2B Missense_Mutation p.R297S 0.09 deleterious_low_confidence(0) possibly_damaging(0.796) TCGA-49-AARO-01 7 44302628 44302628 G A CAMK2B Missense_Mutation p.R66C 0.09 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-49-AARO-01 7 47840472 47840472 C A PKD1L1 Silent p.V2656V 0.09 TCGA-49-AARO-01 7 48314259 48314259 G T ABCA13 Missense_Mutation p.V1666F 0.09 benign(0.002) TCGA-49-AARO-01 7 4900216 4900216 T A PAPOLB Missense_Mutation p.N408I 0.17 deleterious(0.02) probably_damaging(1) TCGA-49-AARO-01 7 62752519 62752519 T C ZNF733P RNA 0.20 TCGA-49-AARO-01 7 75401299 75401299 G T CCL26 Silent p.T32T 0.08 TCGA-49-AARO-01 7 75634720 75634720 T A STYXL1 Missense_Mutation p.E152D 0.16 deleterious(0) possibly_damaging(0.696) TCGA-49-AARO-01 7 77789557 77789557 C A MAGI2 Missense_Mutation p.G877V 0.13 tolerated(0.12) possibly_damaging(0.469) TCGA-49-AARO-01 7 77789558 77789558 C A MAGI2 Missense_Mutation p.G877C 0.13 deleterious(0.03) benign(0.21) TCGA-49-AARO-01 7 82582771 82582771 T A PCLO Missense_Mutation p.T2500S 0.20 unknown(0) TCGA-49-AARO-01 7 83689820 83689820 G T SEMA3A Missense_Mutation p.P170T 0.21 deleterious(0) probably_damaging(0.991) TCGA-49-AARO-01 7 87138743 87138743 G A ABCB1 Silent p.L1113L 0.15 TCGA-49-AARO-01 7 92163922 92163922 G T RBM48 Missense_Mutation p.D219Y 0.24 deleterious(0.02) possibly_damaging(0.646) TCGA-49-AARO-01 7 92765191 92765191 G A SAMD9L Nonsense_Mutation p.Q32* 0.05 TCGA-49-AARO-01 7 94038720 94038720 C A COL1A2 Silent p.P293P 0.28 TCGA-49-AARO-01 7 96650117 96650117 G T DLX5 Silent p.I267I 0.19 TCGA-49-AARO-01 7 97361976 97361976 T C TAC1 Missense_Mutation p.F18L 0.12 tolerated(0.5) benign(0.002) TCGA-49-AARO-01 7 99913451 99913451 G A SPDYE3 Silent p.L415L 0.03 TCGA-49-AARO-01 8 10470139 10470139 C A RP1L1 Missense_Mutation p.G490V 0.24 possibly_damaging(0.791) TCGA-49-AARO-01 8 104897849 104897849 G T RIMS2 Missense_Mutation p.R341L 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-49-AARO-01 8 104898018 104898018 A T RIMS2 Silent p.I397I 0.17 TCGA-49-AARO-01 8 113668381 113668381 A T CSMD3 Splice_Site p.X1002_splice 0.15 TCGA-49-AARO-01 8 121644700 121644700 C A SNTB1 Missense_Mutation p.G327V 0.25 deleterious(0) probably_damaging(0.999) TCGA-49-AARO-01 8 124748012 124748012 G T ANXA13 Missense_Mutation p.P41T 0.18 tolerated(0.12) benign(0.003) TCGA-49-AARO-01 8 139163893 139163893 G A FAM135B Missense_Mutation p.A942V 0.20 tolerated(0.18) benign(0.002) TCGA-49-AARO-01 8 140631100 140631100 C A KCNK9 Missense_Mutation p.A176S 0.24 deleterious(0.01) possibly_damaging(0.516) TCGA-49-AARO-01 8 141711030 141711030 T A PTK2 Missense_Mutation p.E820V 0.22 deleterious(0) probably_damaging(0.999) TCGA-49-AARO-01 8 143867051 143867051 A T LY6D Silent p.S35S 0.24 TCGA-49-AARO-01 8 20107438 20107438 C A LZTS1 Missense_Mutation p.R529L 0.22 deleterious(0) probably_damaging(0.999) TCGA-49-AARO-01 8 32613930 32613930 G T NRG1 Silent p.R276R 0.16 TCGA-49-AARO-01 8 35401974 35401974 G C UNC5D Intron 0.18 TCGA-49-AARO-01 8 37691583 37691583 C A GPR124 Silent p.I515I 0.21 TCGA-49-AARO-01 8 39535044 39535044 T A ADAM18 Silent p.P540P 0.26 TCGA-49-AARO-01 8 42178364 42178364 T C IKBKB Splice_Site p.X563_splice 0.20 TCGA-49-AARO-01 8 52320823 52320823 C A PXDNL Nonsense_Mutation p.E1121* 0.20 TCGA-49-AARO-01 8 52320980 52320980 A C PXDNL Missense_Mutation p.N1068K 0.24 deleterious(0) probably_damaging(0.964) TCGA-49-AARO-01 8 52321691 52321691 C A PXDNL Silent p.P831P 0.25 TCGA-49-AARO-01 8 62593548 62593548 C A ASPH Missense_Mutation p.D101Y 0.14 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-49-AARO-01 8 63492178 63492178 A C NKAIN3 Silent p.I45I 0.37 TCGA-49-AARO-01 8 72975117 72975117 G T TRPA1 Missense_Mutation p.P242T 0.19 deleterious(0) possibly_damaging(0.866) TCGA-49-AARO-01 8 75737654 75737654 G T PI15 Missense_Mutation p.R57M 0.23 deleterious(0) probably_damaging(0.996) TCGA-49-AARO-01 8 77763354 77763354 T G ZFHX4 Missense_Mutation p.C1399W 0.13 possibly_damaging(0.827) TCGA-49-AARO-01 8 77768067 77768067 A T ZFHX4 Missense_Mutation p.K2970N 0.21 probably_damaging(0.99) TCGA-49-AARO-01 8 87443869 87443869 G T WWP1 Nonsense_Mutation p.E500* 0.26 TCGA-49-AARO-01 8 87738832 87738832 G T CNGB3 Missense_Mutation p.Q89K 0.15 tolerated(0.21) benign(0.001) TCGA-49-AARO-01 8 89180161 89180161 C A MMP16 Missense_Mutation p.R149L 0.25 tolerated(0.41) benign(0.411) TCGA-49-AARO-01 8 92346601 92346601 C A SLC26A7 Missense_Mutation p.L241I 0.24 deleterious(0) probably_damaging(0.998) TCGA-49-AARO-01 9 101151204 101151204 G A GABBR2 Silent p.A487A 0.17 TCGA-49-AARO-01 9 101748062 101748062 G A COL15A1 Missense_Mutation p.V106M 0.11 tolerated(0.12) benign(0.021) TCGA-49-AARO-01 9 107298233 107298233 T A OR13C3 Missense_Mutation p.M288L 0.06 deleterious(0.01) benign(0.01) TCGA-49-AARO-01 9 107367056 107367056 C A OR13C2 Missense_Mutation p.G285W 0.13 deleterious(0.03) probably_damaging(0.983) TCGA-49-AARO-01 9 112899243 112899243 G C PALM2-AKAP2 Missense_Mutation p.W473C 0.09 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 9 119903608 119903608 G T ASTN2 Intron 0.11 TCGA-49-AARO-01 9 125486357 125486357 C A OR1L4 Missense_Mutation p.A30D 0.10 tolerated(0.2) benign(0.008) TCGA-49-AARO-01 9 125486358 125486358 C T OR1L4 Silent p.A30A 0.10 TCGA-49-AARO-01 9 130982486 130982486 C A DNM1 Missense_Mutation p.Q239K 0.06 deleterious(0) probably_damaging(0.971) TCGA-49-AARO-01 9 131289780 131289780 G T GLE1 Missense_Mutation p.V430L 0.22 tolerated(0.08) probably_damaging(0.986) TCGA-49-AARO-01 9 133753820 133753820 G T ABL1 Missense_Mutation p.W449L 0.09 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 9 135357711 135357711 C A C9orf171 Silent p.A70A 0.09 TCGA-49-AARO-01 9 138395915 138395915 A G MRPS2 Missense_Mutation p.Q276R 0.23 tolerated(0.43) benign(0.002) TCGA-49-AARO-01 9 138516464 138516464 T A GLT6D1 Missense_Mutation p.M104L 0.08 tolerated(0.08) benign(0.214) TCGA-49-AARO-01 9 140811783 140811783 G T CACNA1B Missense_Mutation p.G289V 0.16 deleterious(0) possibly_damaging(0.575) TCGA-49-AARO-01 9 32632715 32632715 T C TAF1L Missense_Mutation p.R955G 0.27 deleterious(0.01) benign(0.014) TCGA-49-AARO-01 9 32784534 32784534 G T TMEM215 Missense_Mutation p.R118M 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.591) TCGA-49-AARO-01 9 32784646 32784646 G A TMEM215 Silent p.Q155Q 0.14 TCGA-49-AARO-01 9 35681094 35681094 G A CA9 3'UTR 0.25 TCGA-49-AARO-01 9 35812133 35812133 G T SPAG8 Missense_Mutation p.N4K 0.17 tolerated_low_confidence(1) unknown(0) TCGA-49-AARO-01 9 36882079 36882079 G A PAX5 Missense_Mutation p.L312F 0.23 deleterious(0.02) benign(0.33) TCGA-49-AARO-01 9 37745399 37745399 G T FRMPD1 Missense_Mutation p.V1124L 0.19 tolerated_low_confidence(1) benign(0) TCGA-49-AARO-01 9 37746026 37746026 C T FRMPD1 Nonsense_Mutation p.Q1333* 0.11 TCGA-49-AARO-01 9 43630657 43630657 C A SPATA31A6 Silent p.S15S 0.11 TCGA-49-AARO-01 9 73296490 73296490 G C TRPM3 Missense_Mutation p.T426R 0.09 deleterious(0) probably_damaging(0.999) TCGA-49-AARO-01 9 73376606 73376606 C A TRPM3 Missense_Mutation p.V395L 0.11 tolerated(0.29) benign(0.14) TCGA-49-AARO-01 9 84609200 84609200 C T SPATA31D1 Missense_Mutation p.P1272L 0.19 tolerated(0.05) probably_damaging(0.968) TCGA-49-AARO-01 9 8524965 8524965 C A PTPRD Silent p.A213A 0.20 TCGA-49-AARO-01 9 90535172 90535172 T A SPATA31C1 RNA 0.11 TCGA-49-AARO-01 9 94486162 94486162 C A ROR2 Missense_Mutation p.G872C 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-49-AARO-01 X 100608314 100608314 G T BTK Silent p.S592S 0.12 TCGA-49-AARO-01 X 100611127 100611127 G T BTK Missense_Mutation p.F493L 0.29 tolerated(1) benign(0.018) TCGA-49-AARO-01 X 100871160 100871160 G T ARMCX6 Missense_Mutation p.Q151K 0.12 tolerated(0.1) benign(0.124) TCGA-49-AARO-01 X 100912373 100912373 C A ARMCX2 Nonsense_Mutation p.G68* 0.19 TCGA-49-AARO-01 X 10109524 10109524 C A WWC3 Missense_Mutation p.P1088T 0.20 deleterious(0.04) probably_damaging(1) TCGA-49-AARO-01 X 101858476 101858476 G T ARMCX5 Missense_Mutation p.L469F 0.12 deleterious(0) probably_damaging(0.999) TCGA-49-AARO-01 X 102004855 102004855 C A BHLHB9 Missense_Mutation p.A311D 0.11 deleterious(0.02) possibly_damaging(0.717) TCGA-49-AARO-01 X 105011603 105011603 T A IL1RAPL2 Silent p.S670S 0.19 TCGA-49-AARO-01 X 107224485 107224485 C A TEX13B Missense_Mutation p.W255L 0.29 tolerated(0.07) benign(0.071) TCGA-49-AARO-01 X 109247090 109247090 G T TMEM164 Missense_Mutation p.A30S 0.20 tolerated(0.22) benign(0.067) TCGA-49-AARO-01 X 118893547 118893547 G T SOWAHD Missense_Mutation p.R306L 0.60 deleterious(0) probably_damaging(0.98) TCGA-49-AARO-01 X 119388139 119388139 C A ZBTB33 Missense_Mutation p.T290K 0.21 tolerated(0.17) benign(0.021) TCGA-49-AARO-01 X 119388702 119388702 G T ZBTB33 Missense_Mutation p.V478L 0.14 tolerated(0.25) benign(0.022) TCGA-49-AARO-01 X 119495982 119495982 C G ATP1B4 5'UTR 0.17 TCGA-49-AARO-01 X 122319844 122319844 T C GRIA3 Splice_Site p.X90_splice 0.12 TCGA-49-AARO-01 X 123179098 123179098 G T STAG2 Missense_Mutation p.V183L 0.14 deleterious(0) possibly_damaging(0.499) TCGA-49-AARO-01 X 123556375 123556375 G A TENM1 Silent p.I1406I 0.22 TCGA-49-AARO-01 X 123630951 123630951 G T TENM1 Missense_Mutation p.P1204T 0.20 tolerated(0.37) benign(0.008) TCGA-49-AARO-01 X 125685813 125685813 G C DCAF12L1 Missense_Mutation p.P260R 0.23 tolerated(0.09) benign(0.043) TCGA-49-AARO-01 X 128895217 128895217 G A XPNPEP2 Missense_Mutation p.G523D 0.31 deleterious(0) probably_damaging(0.999) TCGA-49-AARO-01 X 12940290 12940290 C A TLR8 3'UTR 0.18 TCGA-49-AARO-01 X 129629263 129629263 T A RP1-274L7.1 Intron 0.21 TCGA-49-AARO-01 X 134033520 134033520 G T MOSPD1 5'UTR 0.19 TCGA-49-AARO-01 X 136112831 136112831 C A GPR101 Missense_Mutation p.D335Y 0.14 tolerated_low_confidence(0.07) possibly_damaging(0.5) TCGA-49-AARO-01 X 136651138 136651138 C A ZIC3 Missense_Mutation p.H380N 0.18 deleterious(0) probably_damaging(0.973) TCGA-49-AARO-01 X 13786838 13786838 G C OFD1 Missense_Mutation p.S977T 0.12 tolerated(0.05) benign(0.294) TCGA-49-AARO-01 X 140996616 140996616 G T MAGEC1 Missense_Mutation p.E1142D 0.08 deleterious_low_confidence(0.04) unknown(0) TCGA-49-AARO-01 X 141291155 141291155 C A MAGEC2 Missense_Mutation p.V207L 0.17 deleterious(0.02) possibly_damaging(0.505) TCGA-49-AARO-01 X 147985771 147985771 T A AFF2 Silent p.P460P 0.17 TCGA-49-AARO-01 X 148072764 148072764 C A AFF2 Missense_Mutation p.L1280M 0.14 deleterious(0.05) possibly_damaging(0.906) TCGA-49-AARO-01 X 148072765 148072765 T A AFF2 Missense_Mutation p.L1280Q 0.13 deleterious(0) probably_damaging(0.991) TCGA-49-AARO-01 X 148627204 148627204 C A CXorf40A Missense_Mutation p.Q10K 0.18 deleterious(0.04) probably_damaging(0.998) TCGA-49-AARO-01 X 149899959 149899959 T A MTMR1 Missense_Mutation p.S245R 0.15 tolerated(0.22) benign(0.03) TCGA-49-AARO-01 X 150348814 150348814 C A GPR50 Silent p.I253I 0.16 TCGA-49-AARO-01 X 151532958 151532958 G T GABRA3 Missense_Mutation p.Q29K 0.20 tolerated_low_confidence(0.44) benign(0.006) TCGA-49-AARO-01 X 153580671 153580671 T A FLNA Missense_Mutation p.Y2216F 0.13 tolerated(0.25) benign(0.023) TCGA-49-AARO-01 X 153716166 153716166 G T SLC10A3 Missense_Mutation p.R372S 0.07 deleterious(0.03) possibly_damaging(0.567) TCGA-49-AARO-01 X 154159515 154159515 C A F8 Silent p.L850L 0.23 TCGA-49-AARO-01 X 154194710 154194710 G T F8 Missense_Mutation p.P421H 0.14 tolerated(0.49) benign(0.401) TCGA-49-AARO-01 X 1584489 1584489 G T P2RY8 Silent p.R321R 0.15 TCGA-49-AARO-01 X 1585399 1585399 C T P2RY8 Missense_Mutation p.R18Q 0.18 tolerated(1) benign(0.001) TCGA-49-AARO-01 X 20081590 20081590 T A MAP7D2 Missense_Mutation p.E105V 0.18 deleterious(0) probably_damaging(1) TCGA-49-AARO-01 X 21613121 21613121 G T CNKSR2 Silent p.L620L 0.12 TCGA-49-AARO-01 X 23019423 23019423 C A DDX53 Missense_Mutation p.L417I 0.20 deleterious(0.01) probably_damaging(0.977) TCGA-49-AARO-01 X 24225854 24225854 T C ZFX Silent p.S274S 0.22 TCGA-49-AARO-01 X 30864700 30864700 G T TAB3 Missense_Mutation p.T591K 0.16 deleterious(0.03) probably_damaging(0.997) TCGA-49-AARO-01 X 3242813 3242813 G T MXRA5 Missense_Mutation p.Q305K 0.12 tolerated(0.64) benign(0.016) TCGA-49-AARO-01 X 32472836 32472836 C G DMD Missense_Mutation p.E1182D 0.22 benign(0.332) TCGA-49-AARO-01 X 39931865 39931865 C A BCOR Missense_Mutation p.V912L 0.21 tolerated(0.6) benign(0.028) TCGA-49-AARO-01 X 47435919 47435919 C T SYN1 Missense_Mutation p.G320R 0.19 deleterious(0.02) probably_damaging(0.981) TCGA-49-AARO-01 X 48826129 48826129 C A KCND1 Missense_Mutation p.A184S 0.38 tolerated(0.43) benign(0.012) TCGA-49-AARO-01 X 49113308 49113308 G T FOXP3 Missense_Mutation p.L183I 0.23 tolerated(0.15) benign(0.011) TCGA-49-AARO-01 X 50053801 50053801 T G CCNB3 Missense_Mutation p.S878A 0.30 tolerated(0.18) benign(0.002) TCGA-49-AARO-01 X 54951130 54951130 G T TRO Missense_Mutation p.V457F 0.25 deleterious(0.01) unknown(0) TCGA-49-AARO-01 X 55290288 55290288 C T PAGE3 Missense_Mutation p.D17N 0.27 deleterious(0.02) probably_damaging(0.945) TCGA-49-AARO-01 X 63563511 63563511 C G MTMR8 Missense_Mutation p.A319P 0.09 deleterious(0) probably_damaging(0.989) TCGA-49-AARO-01 X 69478298 69478298 C A P2RY4 3'UTR 0.19 TCGA-49-AARO-01 X 70387200 70387202 TGG GT NLGN3 Frame_Shift_Del p.V418Gfs*72 0.08 TCGA-49-AARO-01 X 70472528 70472528 G T ZMYM3 Missense_Mutation p.P193H 0.15 tolerated_low_confidence(0.24) possibly_damaging(0.635) TCGA-49-AARO-01 X 70828948 70828948 G T ACRC Missense_Mutation p.R531I 0.17 unknown(0) TCGA-49-AARO-01 X 71359622 71359622 G T NHSL2 Missense_Mutation p.V742F 0.08 tolerated(0.14) possibly_damaging(0.851) TCGA-49-AARO-01 X 75650751 75650751 C T MAGEE1 Missense_Mutation p.H810Y 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-49-AARO-01 X 77243861 77243861 C A ATP7A Missense_Mutation p.P82T 0.18 tolerated(0.2) benign(0.375) TCGA-49-AARO-01 X 77243914 77243914 A G ATP7A Silent p.P99P 0.23 TCGA-49-AARO-01 X 79698933 79698933 C A FAM46D Missense_Mutation p.L299I 0.19 deleterious(0) probably_damaging(0.999) TCGA-49-AARO-01 X 85404001 85404001 A T DACH2 Missense_Mutation p.E126V 0.21 deleterious(0) probably_damaging(0.967) TCGA-49-AARO-01 X 86877351 86877351 T C KLHL4 Silent p.H355H 0.19 TCGA-49-AARQ-01 10 105657479 105657479 T A OBFC1 Splice_Site p.X194_splice 0.20 TCGA-49-AARQ-01 10 105924013 105924013 C A WDR96 Missense_Mutation p.A1029S 0.38 tolerated(0.25) benign(0.151) TCGA-49-AARQ-01 10 117059661 117059661 G T ATRNL1 Missense_Mutation p.G845W 0.27 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 10 118315019 118315019 G T PNLIP Missense_Mutation p.G271W 0.17 deleterious(0) probably_damaging(0.998) TCGA-49-AARQ-01 10 123844275 123844275 G T TACC2 Missense_Mutation p.G754C 0.17 possibly_damaging(0.598) TCGA-49-AARQ-01 10 127491545 127491545 C A UROS Intron 0.28 TCGA-49-AARQ-01 10 13380712 13380712 T C SEPHS1 Missense_Mutation p.Y97C 0.24 deleterious(0.01) possibly_damaging(0.885) TCGA-49-AARQ-01 10 135125358 135125358 G T ZNF511 Intron 0.19 TCGA-49-AARQ-01 10 24909742 24909742 C T ARHGAP21 Missense_Mutation p.S361N 0.45 tolerated(0.25) benign(0.004) TCGA-49-AARQ-01 10 28250565 28250565 G A ARMC4 Missense_Mutation p.R440C 0.22 deleterious(0) possibly_damaging(0.816) TCGA-49-AARQ-01 10 31815686 31815686 G T ZEB1 Nonsense_Mutation p.E958* 0.11 TCGA-49-AARQ-01 10 43606826 43606826 G T RET Missense_Mutation p.A479S 0.26 tolerated(0.77) benign(0.022) TCGA-49-AARQ-01 10 5788362 5788362 G A FAM208B Missense_Mutation p.S993N 0.51 deleterious(0.03) benign(0.288) TCGA-49-AARQ-01 10 60562852 60562852 G T BICC1 Missense_Mutation p.L677F 0.29 tolerated(0.05) probably_damaging(0.999) TCGA-49-AARQ-01 10 72291094 72291094 G T PALD1 Missense_Mutation p.A173S 0.37 tolerated(0.75) benign(0.037) TCGA-49-AARQ-01 10 7247835 7247835 G A SFMBT2 Silent p.F462F 0.39 TCGA-49-AARQ-01 10 79581398 79581398 G A DLG5 Silent p.P948P 0.28 TCGA-49-AARQ-01 10 82039994 82039994 C A MAT1A Missense_Mutation p.A162S 0.31 tolerated(0.3) benign(0.043) TCGA-49-AARQ-01 10 90429673 90429673 T A LIPF Missense_Mutation p.Y178N 0.23 deleterious(0) probably_damaging(0.999) TCGA-49-AARQ-01 10 91163424 91163424 G C IFIT1 Silent p.L464L 0.18 TCGA-49-AARQ-01 10 96109020 96109020 T A NOC3L Missense_Mutation p.E415V 0.24 tolerated(0.1) benign(0.001) TCGA-49-AARQ-01 10 98092349 98092349 C T DNTT Missense_Mutation p.S452F 0.19 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 10 98092354 98092354 G T DNTT Splice_Site p.X453_splice 0.18 TCGA-49-AARQ-01 10 98376459 98376459 T C PIK3AP1 Missense_Mutation p.K651E 0.18 deleterious(0) possibly_damaging(0.834) TCGA-49-AARQ-01 10 99148268 99148268 G A RRP12 Silent p.I289I 0.25 TCGA-49-AARQ-01 10 99969097 99969097 C T R3HCC1L Missense_Mutation p.T409I 0.21 tolerated_low_confidence(0.19) benign(0.005) TCGA-49-AARQ-01 11 100863506 100863506 A G TMEM133 3'UTR 0.25 TCGA-49-AARQ-01 11 102564708 102564708 C A MMP27 Missense_Mutation p.K374N 0.22 deleterious(0.01) benign(0.035) TCGA-49-AARQ-01 11 102742630 102742630 G T MMP12 RNA 0.18 TCGA-49-AARQ-01 11 102742666 102742666 G A MMP12 RNA 0.53 TCGA-49-AARQ-01 11 1082665 1082665 C T MUC2 Silent p.A638A 0.13 TCGA-49-AARQ-01 11 110333138 110333138 G T FDX1 Silent p.V167V 0.10 TCGA-49-AARQ-01 11 111908177 111908177 C T DLAT Missense_Mutation p.P323L 0.21 deleterious(0.05) benign(0.004) TCGA-49-AARQ-01 11 113860506 113860506 G T HTR3A 3'UTR 0.17 TCGA-49-AARQ-01 11 116706575 116706575 G A APOA1 Silent p.V251V 0.25 TCGA-49-AARQ-01 11 117866323 117866323 C G IL10RA Silent p.V236V 0.12 TCGA-49-AARQ-01 11 117869595 117869595 C A IL10RA Missense_Mutation p.P326T 0.14 deleterious(0.02) possibly_damaging(0.642) TCGA-49-AARQ-01 11 118374768 118374768 G T KMT2A Missense_Mutation p.D2721Y 0.18 probably_damaging(0.999) TCGA-49-AARQ-01 11 121340734 121340734 C T SORL1 Missense_Mutation p.H102Y 0.21 deleterious(0) probably_damaging(0.993) TCGA-49-AARQ-01 11 121498465 121498465 G T SORL1 Missense_Mutation p.G2189V 0.21 deleterious(0.01) probably_damaging(1) TCGA-49-AARQ-01 11 122650348 122650348 G A UBASH3B Silent p.A182A 0.09 TCGA-49-AARQ-01 11 123847414 123847414 G T OR10S1 Missense_Mutation p.P329T 0.42 deleterious_low_confidence(0.02) benign(0.36) TCGA-49-AARQ-01 11 124440294 124440294 C T OR8A1 Silent p.S110S 0.18 TCGA-49-AARQ-01 11 1251232 1251232 C A MUC5B Intron 0.39 TCGA-49-AARQ-01 11 1271102 1271102 T A MUC5B Missense_Mutation p.L4331H 0.15 benign(0.216) TCGA-49-AARQ-01 11 130332149 130332149 G A ADAMTS15 Missense_Mutation p.G420S 0.22 deleterious(0.02) probably_damaging(1) TCGA-49-AARQ-01 11 18195080 18195080 C T MRGPRX4 Missense_Mutation p.L93F 0.21 tolerated(0.7) benign(0.001) TCGA-49-AARQ-01 11 193795 193795 G A SCGB1C1 Missense_Mutation p.E47K 0.19 deleterious(0.04) possibly_damaging(0.579) TCGA-49-AARQ-01 11 20065723 20065723 G T NAV2 Missense_Mutation p.G1058V 0.42 deleterious(0.01) probably_damaging(1) TCGA-49-AARQ-01 11 31099464 31099464 C A DCDC1 Missense_Mutation p.G749V 0.21 deleterious(0) probably_damaging(0.964) TCGA-49-AARQ-01 11 31812288 31812288 G T PAX6 Missense_Mutation p.P399T 0.16 tolerated(0.15) benign(0.001) TCGA-49-AARQ-01 11 33123854 33123854 C A CSTF3 Missense_Mutation p.R232L 0.19 deleterious(0) benign(0.017) TCGA-49-AARQ-01 11 34119300 34119300 C T CAPRIN1 Missense_Mutation p.A686V 0.11 tolerated(0.34) unknown(0) TCGA-49-AARQ-01 11 36596513 36596513 G T RAG1 Silent p.V553V 0.34 TCGA-49-AARQ-01 11 45277276 45277276 G C SYT13 Missense_Mutation p.P117R 0.24 tolerated(0.58) benign(0.073) TCGA-49-AARQ-01 11 47436242 47436242 G A SLC39A13 Intron 0.12 TCGA-49-AARQ-01 11 4967649 4967649 C A OR51A4 Nonsense_Mutation p.G228* 0.29 TCGA-49-AARQ-01 11 5080198 5080198 C A OR52E2 Silent p.V220V 0.27 TCGA-49-AARQ-01 11 5142413 5142413 A G OR52A4 RNA 0.45 TCGA-49-AARQ-01 11 5172704 5172704 G A OR52A1 Missense_Mutation p.T299I 0.35 deleterious(0) benign(0.157) TCGA-49-AARQ-01 11 55371743 55371743 G T OR4C11 Missense_Mutation p.T36N 0.52 deleterious(0) possibly_damaging(0.842) TCGA-49-AARQ-01 11 55406684 55406684 T A OR4P4 Missense_Mutation p.I284K 0.50 deleterious(0) probably_damaging(0.91) TCGA-49-AARQ-01 11 55579767 55579767 C A OR5L1 Silent p.T275T 0.28 TCGA-49-AARQ-01 11 55653243 55653243 G T TRIM51 Missense_Mutation p.L113F 0.07 deleterious(0.02) possibly_damaging(0.905) TCGA-49-AARQ-01 11 55681912 55681912 G A OR5W2 Silent p.I49I 0.28 TCGA-49-AARQ-01 11 55681938 55681938 C A OR5W2 Missense_Mutation p.A41S 0.24 deleterious(0.01) benign(0.029) TCGA-49-AARQ-01 11 56043805 56043805 G C OR5T1 Missense_Mutation p.G231R 0.20 tolerated(0.34) possibly_damaging(0.824) TCGA-49-AARQ-01 11 56230594 56230594 C A OR5M9 Missense_Mutation p.C95F 0.18 deleterious(0) probably_damaging(0.986) TCGA-49-AARQ-01 11 56309903 56309903 G T OR5M11 Nonsense_Mutation p.Y277* 0.43 TCGA-49-AARQ-01 11 57995561 57995561 C A OR10Q1 Missense_Mutation p.V263L 0.18 deleterious(0.02) probably_damaging(0.919) TCGA-49-AARQ-01 11 58979597 58979597 C T MPEG1 Missense_Mutation p.V248M 0.35 deleterious(0.04) benign(0.315) TCGA-49-AARQ-01 11 59421464 59421464 C T PATL1 Silent p.Q371Q 0.16 TCGA-49-AARQ-01 11 6024157 6024157 G T OR56A4 Missense_Mutation p.N74K 0.41 deleterious(0.02) benign(0.205) TCGA-49-AARQ-01 11 62038373 62038373 G T SCGB2A2 Nonsense_Mutation p.E26* 0.13 TCGA-49-AARQ-01 11 62521497 62521497 G A ZBTB3 Missense_Mutation p.S13L 0.16 tolerated_low_confidence(0.06) benign(0.003) TCGA-49-AARQ-01 11 62931487 62931487 G T SLC22A25 Missense_Mutation p.L485I 0.45 deleterious(0.03) possibly_damaging(0.701) TCGA-49-AARQ-01 11 64329764 64329764 G T SLC22A11 Missense_Mutation p.R226S 0.43 tolerated(0.41) benign(0.216) TCGA-49-AARQ-01 11 64514820 64514820 G A PYGM Nonsense_Mutation p.Q730* 0.31 TCGA-49-AARQ-01 11 6453025 6453025 C G HPX Missense_Mutation p.Q325H 0.21 deleterious(0.02) benign(0.363) TCGA-49-AARQ-01 11 65293060 65293060 G T SCYL1 Missense_Mutation p.V43L 0.33 deleterious(0.04) probably_damaging(0.982) TCGA-49-AARQ-01 11 65688826 65688826 G C DRAP1 Missense_Mutation p.A180P 0.26 tolerated_low_confidence(0.35) unknown(0) TCGA-49-AARQ-01 11 66026210 66026210 G A KLC2 Missense_Mutation p.E49K 0.37 tolerated(0.24) benign(0.012) TCGA-49-AARQ-01 11 66329012 66329012 C A CTSF 3'Flank 0.27 TCGA-49-AARQ-01 11 688363 688363 C A DEAF1 Missense_Mutation p.G162V 0.17 deleterious(0) possibly_damaging(0.878) TCGA-49-AARQ-01 11 72289364 72289364 C A PDE2A Missense_Mutation p.R843M 0.50 deleterious(0.02) possibly_damaging(0.549) TCGA-49-AARQ-01 11 74547470 74547470 G A RNF169 Missense_Mutation p.E608K 0.25 deleterious(0.02) benign(0.08) TCGA-49-AARQ-01 11 76979994 76979994 A G GDPD4 Missense_Mutation p.I200T 0.16 deleterious(0) benign(0.085) TCGA-49-AARQ-01 11 7982067 7982067 C T NLRP10 Silent p.L364L 0.20 TCGA-49-AARQ-01 11 83497810 83497810 G A DLG2 Missense_Mutation p.A583V 0.45 deleterious(0.03) benign(0.292) TCGA-49-AARQ-01 11 83673999 83673999 G C DLG2 Silent p.S423S 0.22 TCGA-49-AARQ-01 11 85396517 85396517 G T CCDC89 Silent p.A219A 0.51 TCGA-49-AARQ-01 11 89883709 89883709 G A NAALAD2 Silent p.E181E 0.40 TCGA-49-AARQ-01 11 94192717 94192717 C A MRE11A Missense_Mutation p.G453W 0.22 deleterious(0) probably_damaging(0.996) TCGA-49-AARQ-01 11 94320314 94320314 C T PIWIL4 Missense_Mutation p.T272M 0.14 deleterious(0) probably_damaging(0.999) TCGA-49-AARQ-01 12 10150900 10150900 C T CLEC1B Silent p.L48L 0.10 TCGA-49-AARQ-01 12 101701966 101701966 G A UTP20 Missense_Mutation p.D667N 0.31 tolerated(0.15) possibly_damaging(0.638) TCGA-49-AARQ-01 12 109278854 109278854 C T DAO Silent p.H24H 0.26 TCGA-49-AARQ-01 12 109278861 109278861 C T DAO Silent p.L27L 0.26 TCGA-49-AARQ-01 12 112638466 112638466 T A HECTD4 Missense_Mutation p.D2702V 0.27 probably_damaging(0.958) TCGA-49-AARQ-01 12 113875809 113875809 G T SDSL Silent p.V305V 0.32 TCGA-49-AARQ-01 12 114793848 114793848 T A TBX5 Missense_Mutation p.E349V 0.14 tolerated(0.17) possibly_damaging(0.748) TCGA-49-AARQ-01 12 114793849 114793849 C A TBX5 Nonsense_Mutation p.E349* 0.16 TCGA-49-AARQ-01 12 114804010 114804010 G T TBX5 Silent p.P314P 0.35 TCGA-49-AARQ-01 12 11546297 11546297 G T PRB2 Missense_Mutation p.P239T 0.21 tolerated_low_confidence(0.33) unknown(0) TCGA-49-AARQ-01 12 117603421 117603421 C A FBXO21 Nonsense_Mutation p.E399* 0.20 TCGA-49-AARQ-01 12 119592081 119592081 G T SRRM4 Silent p.S475S 0.27 TCGA-49-AARQ-01 12 124297750 124297750 C A DNAH10 Missense_Mutation p.P944T 0.38 benign(0.028) TCGA-49-AARQ-01 12 125900136 125900136 G T TMEM132B Missense_Mutation p.W335L 0.17 deleterious(0) probably_damaging(0.999) TCGA-49-AARQ-01 12 132212852 132212852 G T SFSWAP Silent p.V320V 0.27 TCGA-49-AARQ-01 12 132249176 132249176 A T SFSWAP Silent p.V632V 0.23 TCGA-49-AARQ-01 12 13232828 13232828 G C KIAA1467 Missense_Mutation p.R583P 0.14 deleterious(0) probably_damaging(0.996) TCGA-49-AARQ-01 12 133372641 133372641 C - GOLGA3 Frame_Shift_Del p.E756Sfs*55 0.35 TCGA-49-AARQ-01 12 13720181 13720181 C A GRIN2B Silent p.L792L 0.20 TCGA-49-AARQ-01 12 1893096 1893096 G C ADIPOR2 Missense_Mutation p.V297L 0.17 tolerated(0.69) benign(0.002) TCGA-49-AARQ-01 12 21614033 21614036 GAAG AAA PYROXD1 Frame_Shift_Del p.K278Sfs*25 0.14 TCGA-49-AARQ-01 12 21614979 21614979 G C PYROXD1 Missense_Mutation p.K306N 0.18 tolerated(0.06) benign(0.2) TCGA-49-AARQ-01 12 24736918 24736918 T C LINC00477 RNA 0.22 TCGA-49-AARQ-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.41 deleterious(0) possibly_damaging(0.479) TCGA-49-AARQ-01 12 266748 266748 C A IQSEC3 Missense_Mutation p.D777E 0.17 deleterious(0) probably_damaging(0.983) TCGA-49-AARQ-01 12 2997555 2997555 G A RHNO1 Missense_Mutation p.R216Q 0.13 deleterious(0.02) probably_damaging(1) TCGA-49-AARQ-01 12 30906294 30906294 T A CAPRIN2 Missense_Mutation p.N135I 0.40 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 12 41966721 41966721 A T PDZRN4 Missense_Mutation p.I714L 0.19 tolerated(0.65) benign(0) TCGA-49-AARQ-01 12 45429884 45429884 A T DBX2 Silent p.P139P 0.46 TCGA-49-AARQ-01 12 46245666 46245666 A T ARID2 Missense_Mutation p.T1254S 0.12 deleterious_low_confidence(0.02) probably_damaging(0.993) TCGA-49-AARQ-01 12 48272713 48272713 T G VDR Intron 0.18 TCGA-49-AARQ-01 12 49390949 49390949 G C DDN Missense_Mutation p.H570Q 0.15 tolerated_low_confidence(0.12) benign(0.118) TCGA-49-AARQ-01 12 51882522 51882522 G T SLC4A8 Missense_Mutation p.G776C 0.32 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 12 53292614 53292614 C G KRT8 Missense_Mutation p.A379P 0.08 deleterious(0.02) benign(0.104) TCGA-49-AARQ-01 12 53452181 53452181 G T TENC1 Nonsense_Mutation p.G403* 0.14 TCGA-49-AARQ-01 12 56031321 56031321 G C OR10P1 Missense_Mutation p.V216L 0.25 tolerated(1) benign(0.03) TCGA-49-AARQ-01 12 56232301 56232301 A T MMP19 Intron 0.44 TCGA-49-AARQ-01 12 56620179 56620179 A G NABP2 Missense_Mutation p.T138A 0.19 tolerated(0.79) benign(0) TCGA-49-AARQ-01 12 56812068 56812068 C A TIMELESS Nonsense_Mutation p.E1102* 0.25 TCGA-49-AARQ-01 12 57327776 57327776 G T SDR9C7 Silent p.A90A 0.26 TCGA-49-AARQ-01 12 58008472 58008472 G A ARHGEF25 Missense_Mutation p.E312K 0.29 deleterious(0) possibly_damaging(0.845) TCGA-49-AARQ-01 12 60173376 60173376 G C SLC16A7 Missense_Mutation p.L451F 0.20 tolerated(0.57) possibly_damaging(0.703) TCGA-49-AARQ-01 12 62783650 62783650 A T USP15 Nonsense_Mutation p.R576* 0.16 TCGA-49-AARQ-01 12 6623946 6623946 G T NCAPD2 Nonsense_Mutation p.G283* 0.08 TCGA-49-AARQ-01 12 68715162 68715162 C A MDM1 Missense_Mutation p.A324S 0.16 tolerated(0.11) benign(0.121) TCGA-49-AARQ-01 12 7025874 7025874 C T ENO2 Missense_Mutation p.A74V 0.42 tolerated_low_confidence(0.05) benign(0.152) TCGA-49-AARQ-01 12 70760688 70760688 G C KCNMB4 Silent p.S58S 0.16 TCGA-49-AARQ-01 12 70949706 70949706 T C PTPRB Missense_Mutation p.Q1646R 0.33 tolerated(0.36) benign(0.358) TCGA-49-AARQ-01 12 72018007 72018007 C T ZFC3H1 Silent p.L1461L 0.25 TCGA-49-AARQ-01 12 75444710 75444710 A G KCNC2 Missense_Mutation p.F359L 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-49-AARQ-01 12 76783563 76783563 C A OSBPL8 Missense_Mutation p.S405I 0.22 deleterious(0) probably_damaging(0.914) TCGA-49-AARQ-01 12 78388620 78388620 G A NAV3 Missense_Mutation p.G237R 0.18 tolerated(0.46) possibly_damaging(0.849) TCGA-49-AARQ-01 12 81568609 81568609 G T ACSS3 Missense_Mutation p.V381L 0.18 deleterious(0.04) benign(0.083) TCGA-49-AARQ-01 12 81593168 81593168 G T ACSS3 Silent p.L433L 0.24 TCGA-49-AARQ-01 12 8375003 8375003 G A FAM90A1 Silent p.C270C 0.46 TCGA-49-AARQ-01 12 9020473 9020473 T A A2ML1 Nonsense_Mutation p.Y1251* 0.29 TCGA-49-AARQ-01 12 91347396 91347396 C T CCER1 Missense_Mutation p.R375K 0.29 tolerated(0.07) unknown(0) TCGA-49-AARQ-01 12 91357950 91357950 C A EPYC Missense_Mutation p.V318F 0.29 deleterious(0.01) benign(0.016) TCGA-49-AARQ-01 12 9303333 9303333 G C PZP Missense_Mutation p.Q1431E 0.25 tolerated(0.32) possibly_damaging(0.901) TCGA-49-AARQ-01 12 94673303 94673303 G T PLXNC1 Missense_Mutation p.R1218L 0.33 tolerated(0.21) benign(0.102) TCGA-49-AARQ-01 12 98849753 98849753 C T SLC9A7P1 RNA 0.38 TCGA-49-AARQ-01 13 101997754 101997754 C A NALCN Missense_Mutation p.S221I 0.22 deleterious(0) possibly_damaging(0.507) TCGA-49-AARQ-01 13 110822037 110822037 C A COL4A1 Missense_Mutation p.G1272V 0.30 probably_damaging(1) TCGA-49-AARQ-01 13 110822038 110822038 C A COL4A1 Missense_Mutation p.G1272C 0.31 probably_damaging(1) TCGA-49-AARQ-01 13 21548928 21548928 C A LATS2 3'UTR 0.40 TCGA-49-AARQ-01 13 23908004 23908004 G C SACS Missense_Mutation p.I3337M 0.19 probably_damaging(0.993) TCGA-49-AARQ-01 13 25276071 25276071 A G ATP12A Splice_Site p.X634_splice 0.54 TCGA-49-AARQ-01 13 25457509 25457509 T G CENPJ Splice_Site p.X1275_splice 0.20 TCGA-49-AARQ-01 13 29004241 29004241 C A FLT1 Missense_Mutation p.R351L 0.18 deleterious(0.01) benign(0.326) TCGA-49-AARQ-01 13 36167579 36167579 G T NBEA Missense_Mutation p.V2431L 0.44 deleterious(0.01) possibly_damaging(0.754) TCGA-49-AARQ-01 13 37011967 37011967 G A CCNA1 Missense_Mutation p.G167S 0.22 tolerated(1) benign(0) TCGA-49-AARQ-01 13 38171417 38171417 G T POSTN Missense_Mutation p.P41Q 0.45 deleterious(0) probably_damaging(0.999) TCGA-49-AARQ-01 13 46093187 46093187 G T COG3 Missense_Mutation p.Q704H 0.13 tolerated(0.14) possibly_damaging(0.45) TCGA-49-AARQ-01 13 48881502 48881502 G A RB1 Nonsense_Mutation p.W75* 0.40 TCGA-49-AARQ-01 13 49039155 49039155 A T RB1 Nonsense_Mutation p.K745* 0.10 TCGA-49-AARQ-01 13 61041495 61041495 G A TDRD3 Silent p.E159E 0.20 TCGA-49-AARQ-01 13 64321311 64321311 T A AL445989.1 Nonsense_Mutation p.Y126* 0.17 TCGA-49-AARQ-01 13 84454322 84454322 C T SLITRK1 Missense_Mutation p.E441K 0.38 deleterious(0.02) benign(0.059) TCGA-49-AARQ-01 13 92345480 92345480 C T GPC5 Missense_Mutation p.T122I 0.28 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 13 95114348 95114348 G T DCT Missense_Mutation p.P320Q 0.16 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 13 96413033 96413033 G T DNAJC3 Nonsense_Mutation p.E277* 0.26 TCGA-49-AARQ-01 14 101419705 101419705 G A SNORD114-3 RNA 0.23 TCGA-49-AARQ-01 14 101419706 101419706 G C SNORD114-3 RNA 0.21 TCGA-49-AARQ-01 14 103180810 103180810 A T RCOR1 Silent p.T303T 0.16 TCGA-49-AARQ-01 14 103336739 103336739 G T TRAF3 Missense_Mutation p.E67D 0.69 tolerated(0.12) benign(0.235) TCGA-49-AARQ-01 14 104027474 104027474 T C BAG5 Missense_Mutation p.I51V 0.48 tolerated(0.31) benign(0.014) TCGA-49-AARQ-01 14 105406587 105406587 G T AHNAK2 Missense_Mutation p.D5067E 0.16 benign(0.016) TCGA-49-AARQ-01 14 105423770 105423770 C A AHNAK2 Nonsense_Mutation p.E64* 0.17 TCGA-49-AARQ-01 14 106321824 106321824 G A IGHM Missense_Mutation p.T137M 0.48 deleterious(0.02) possibly_damaging(0.9) TCGA-49-AARQ-01 14 106815954 106815954 G T IGHV3-33 Missense_Mutation p.S40Y 0.06 deleterious_low_confidence(0) probably_damaging(1) TCGA-49-AARQ-01 14 107048821 107048821 C A IGHV3-53 Missense_Mutation p.V67F 0.15 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-49-AARQ-01 14 19559146 19559146 T A POTEG Missense_Mutation p.D264E 0.84 deleterious(0) probably_damaging(0.96) TCGA-49-AARQ-01 14 20216442 20216442 C A OR4Q3 Missense_Mutation p.L286I 0.52 tolerated(0.42) benign(0.029) TCGA-49-AARQ-01 14 21109817 21109817 T - OR6S1 Frame_Shift_Del p.T12Qfs*28 0.36 TCGA-49-AARQ-01 14 21702250 21702250 C A HNRNPC Missense_Mutation p.A35S 0.16 deleterious(0.04) benign(0.397) TCGA-49-AARQ-01 14 22434209 22434209 G T TRAV12-3 Missense_Mutation p.D88Y 0.16 deleterious(0) probably_damaging(0.946) TCGA-49-AARQ-01 14 23896927 23896927 G A MYH7 Silent p.I585I 0.22 TCGA-49-AARQ-01 14 24035356 24035356 G T AP1G2 Missense_Mutation p.A162E 0.73 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 14 24529877 24529877 G A LRRC16B Missense_Mutation p.R701Q 0.29 tolerated(0.34) possibly_damaging(0.559) TCGA-49-AARQ-01 14 24663958 24663958 C A TM9SF1 Nonsense_Mutation p.E90* 0.15 TCGA-49-AARQ-01 14 33290767 33290767 A T AKAP6 Nonsense_Mutation p.K1250* 0.12 TCGA-49-AARQ-01 14 34419638 34419638 G T EGLN3 Missense_Mutation p.S107R 0.16 tolerated(0.09) benign(0.002) TCGA-49-AARQ-01 14 35735932 35735932 G T KIAA0391 Splice_Site p.X426_splice 0.47 TCGA-49-AARQ-01 14 45633769 45633769 G A FANCM Splice_Site p.X596_splice 0.74 TCGA-49-AARQ-01 14 50087926 50087926 C T MGAT2 5'UTR 0.29 TCGA-49-AARQ-01 14 56233053 56233053 G A RP11-813I20.2 Intron 0.12 TCGA-49-AARQ-01 14 60574852 60574852 C T PCNXL4 Intron 0.43 TCGA-49-AARQ-01 14 60581532 60581532 C G PCNXL4 Silent p.L34L 0.21 TCGA-49-AARQ-01 14 62204921 62204921 G T HIF1A Missense_Mutation p.A480S 0.18 tolerated(0.98) benign(0.001) TCGA-49-AARQ-01 14 62551094 62551094 C A SYT16 Silent p.R539R 0.22 TCGA-49-AARQ-01 14 64676813 64676813 C T SYNE2 Missense_Mutation p.R6232W 0.17 probably_damaging(0.965) TCGA-49-AARQ-01 14 70633551 70633551 C T SLC8A3 Missense_Mutation p.G530D 0.44 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 14 70633552 70633552 C T SLC8A3 Missense_Mutation p.G530S 0.44 deleterious(0.01) probably_damaging(1) TCGA-49-AARQ-01 14 75576493 75576493 G T NEK9 Silent p.P359P 0.50 TCGA-49-AARQ-01 14 77844652 77844652 T A SAMD15 Silent p.T297T 0.43 TCGA-49-AARQ-01 14 80328229 80328229 G T NRXN3 Silent p.T1036T 0.67 TCGA-49-AARQ-01 14 90263530 90263530 C G EFCAB11 3'UTR 0.30 TCGA-49-AARQ-01 14 94152942 94152942 G T UNC79 Missense_Mutation p.V2144L 0.43 tolerated(0.4) benign(0.002) TCGA-49-AARQ-01 14 94466008 94466008 G T LINC00521 RNA 0.57 TCGA-49-AARQ-01 15 100330998 100330998 C A AC090825.1 5'Flank 0.42 TCGA-49-AARQ-01 15 24921752 24921752 C A NPAP1 Silent p.A246A 0.42 TCGA-49-AARQ-01 15 25479398 25479398 C T SNORD115-35 RNA 0.41 TCGA-49-AARQ-01 15 28326915 28326915 G T OCA2 Missense_Mutation p.R36S 0.86 tolerated_low_confidence(0.51) benign(0) TCGA-49-AARQ-01 15 28369367 28369367 T A HERC2 Missense_Mutation p.Y4335F 0.65 probably_damaging(0.913) TCGA-49-AARQ-01 15 31338416 31338416 C A TRPM1 Silent p.L612L 0.50 TCGA-49-AARQ-01 15 31360176 31360176 C A TRPM1 Missense_Mutation p.E150D 0.47 tolerated(0.26) benign(0.006) TCGA-49-AARQ-01 15 33905494 33905494 G T RYR3 Missense_Mutation p.G759W 0.82 probably_damaging(1) TCGA-49-AARQ-01 15 35084476 35084476 C A ACTC1 Missense_Mutation p.R208L 0.47 tolerated_low_confidence(0.08) probably_damaging(0.999) TCGA-49-AARQ-01 15 41247885 41247885 G T CHAC1 Missense_Mutation p.Q236H 0.48 tolerated(0.25) possibly_damaging(0.722) TCGA-49-AARQ-01 15 44063369 44063369 C G PDIA3 Missense_Mutation p.Q491E 0.51 tolerated(0.81) benign(0.001) TCGA-49-AARQ-01 15 51014350 51014350 G C SPPL2A Missense_Mutation p.S433C 0.35 deleterious(0) probably_damaging(0.971) TCGA-49-AARQ-01 15 54307123 54307123 G T UNC13C Missense_Mutation p.G675C 0.59 tolerated_low_confidence(0.06) benign(0.155) TCGA-49-AARQ-01 15 60297303 60297303 C T FOXB1 Silent p.F47F 0.56 TCGA-49-AARQ-01 15 65370419 65370419 G T KBTBD13 Silent p.R422R 0.50 TCGA-49-AARQ-01 15 68583424 68583424 G T FEM1B Silent p.P576P 0.52 TCGA-49-AARQ-01 15 79614379 79614379 G T TMED3 Silent p.T159T 0.60 TCGA-49-AARQ-01 15 84287065 84287065 C G SH3GL3 3'UTR 0.67 TCGA-49-AARQ-01 15 88799229 88799229 G T NTRK3 Missense_Mutation p.N52K 0.42 tolerated(0.8) benign(0.145) TCGA-49-AARQ-01 15 91769553 91769553 C A SV2B Nonsense_Mutation p.Y20* 0.45 TCGA-49-AARQ-01 15 91769554 91769554 C A SV2B Missense_Mutation p.R21S 0.37 tolerated_low_confidence(0.31) benign(0.007) TCGA-49-AARQ-01 16 15841510 15841510 G T MYH11 Silent p.A783A 0.56 TCGA-49-AARQ-01 16 15850237 15850237 C T MYH11 Silent p.K577K 0.17 TCGA-49-AARQ-01 16 27373880 27373880 G T IL4R Missense_Mutation p.V403L 0.62 tolerated(0.08) benign(0.03) TCGA-49-AARQ-01 16 27761443 27761443 G T KIAA0556 Silent p.R1054R 0.36 TCGA-49-AARQ-01 16 49412428 49412428 C A C16orf78 Silent p.L106L 0.48 TCGA-49-AARQ-01 16 57931729 57931729 C A CNGB1 Silent p.L1022L 0.19 TCGA-49-AARQ-01 16 70398451 70398451 A T DDX19A Missense_Mutation p.Q131L 0.19 deleterious(0.02) probably_damaging(0.92) TCGA-49-AARQ-01 16 70778430 70778430 C A VAC14 Missense_Mutation p.G475V 0.61 deleterious(0.04) benign(0.311) TCGA-49-AARQ-01 16 74446668 74446668 C A CLEC18B Intron 0.18 TCGA-49-AARQ-01 16 88643618 88643618 G C ZC3H18 Silent p.L29L 0.31 TCGA-49-AARQ-01 17 11778275 11778275 C T DNAH9 Missense_Mutation p.P3418S 0.47 probably_damaging(0.983) TCGA-49-AARQ-01 17 1576400 1576400 G A PRPF8 Missense_Mutation p.A1250V 0.36 deleterious(0.01) possibly_damaging(0.472) TCGA-49-AARQ-01 17 17898382 17898382 A T LRRC48 Missense_Mutation p.N261Y 0.54 deleterious(0.03) benign(0.212) TCGA-49-AARQ-01 17 17965197 17965197 C T GID4 Silent p.I249I 0.27 TCGA-49-AARQ-01 17 21319122 21319122 G T KCNJ12 Silent p.P156P 0.28 TCGA-49-AARQ-01 17 21826177 21826177 C A FAM27L RNA 0.45 TCGA-49-AARQ-01 17 28643656 28643656 G C TMIGD1 3'UTR 0.44 TCGA-49-AARQ-01 17 29632273 29632273 G T EVI2B Missense_Mutation p.Q119K 0.13 tolerated(0.4) possibly_damaging(0.486) TCGA-49-AARQ-01 17 32647966 32647966 G T CCL8 3'UTR 0.46 TCGA-49-AARQ-01 17 34171979 34171979 G T TAF15 Missense_Mutation p.G559V 0.16 deleterious_low_confidence(0) unknown(0) TCGA-49-AARQ-01 17 34859018 34859018 C A MYO19 Nonsense_Mutation p.E667* 0.44 TCGA-49-AARQ-01 17 35913627 35913627 T G SYNRG Missense_Mutation p.K733T 0.36 tolerated_low_confidence(0.07) benign(0.208) TCGA-49-AARQ-01 17 36002201 36002201 T C DDX52 Missense_Mutation p.E75G 0.53 tolerated(0.09) benign(0.027) TCGA-49-AARQ-01 17 3660394 3660394 C T ITGAE Missense_Mutation p.R352K 0.32 tolerated(0.77) benign(0.003) TCGA-49-AARQ-01 17 37107931 37107931 T A FBXO47 Silent p.A173A 0.12 TCGA-49-AARQ-01 17 38133410 38133410 G A GSDMA 3'UTR 0.57 TCGA-49-AARQ-01 17 38936557 38936557 C T KRT27 Missense_Mutation p.E227K 0.19 tolerated(0.09) benign(0.008) TCGA-49-AARQ-01 17 39394524 39394524 C A KRTAP9-8 Missense_Mutation p.P74H 0.45 tolerated(0.09) unknown(0) TCGA-49-AARQ-01 17 39394536 39394536 C A KRTAP9-8 Missense_Mutation p.P78H 0.43 deleterious(0) unknown(0) TCGA-49-AARQ-01 17 39780589 39780589 G C KRT17 Missense_Mutation p.S58C 0.32 tolerated(0.1) possibly_damaging(0.869) TCGA-49-AARQ-01 17 39890676 39890676 C A HAP1 Missense_Mutation p.A71S 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.567) TCGA-49-AARQ-01 17 41577435 41577435 G T DHX8 Nonsense_Mutation p.G504* 0.29 TCGA-49-AARQ-01 17 42460976 42460976 C A ITGA2B Silent p.P365P 0.38 TCGA-49-AARQ-01 17 44803921 44803921 G A NSF Missense_Mutation p.D590N 0.15 tolerated(0.24) benign(0.093) TCGA-49-AARQ-01 17 45517964 45517964 C A EFCAB13 Missense_Mutation p.Q936K 0.49 tolerated_low_confidence(0.17) benign(0.001) TCGA-49-AARQ-01 17 46055198 46055198 G T CDK5RAP3 Missense_Mutation p.D304Y 0.27 deleterious(0.01) possibly_damaging(0.608) TCGA-49-AARQ-01 17 4686435 4686435 C A TM4SF5 3'UTR 0.44 TCGA-49-AARQ-01 17 47120866 47120866 C A IGF2BP1 Missense_Mutation p.P385Q 0.19 deleterious(0.05) possibly_damaging(0.841) TCGA-49-AARQ-01 17 48551923 48551923 C T ACSF2 3'UTR 0.08 TCGA-49-AARQ-01 17 4862892 4862892 C A SPAG7 Missense_Mutation p.M207I 0.22 deleterious(0.01) benign(0.23) TCGA-49-AARQ-01 17 4863385 4863385 C T SPAG7 Missense_Mutation p.E117K 0.25 deleterious(0) probably_damaging(0.999) TCGA-49-AARQ-01 17 56084481 56084481 C G SRSF1 Silent p.V6V 0.12 TCGA-49-AARQ-01 17 56355423 56355423 G T MPO Missense_Mutation p.N323K 0.44 tolerated(0.65) benign(0.002) TCGA-49-AARQ-01 17 60683501 60683501 C G TLK2 Missense_Mutation p.P624A 0.32 deleterious(0) probably_damaging(0.999) TCGA-49-AARQ-01 17 62007605 62007605 G T CD79B Missense_Mutation p.Q88K 0.40 tolerated(0.61) benign(0.002) TCGA-49-AARQ-01 17 62007606 62007606 G T CD79B Silent p.P87P 0.40 TCGA-49-AARQ-01 17 62512913 62512913 C G CEP95 Missense_Mutation p.S147C 0.24 tolerated(0.11) possibly_damaging(0.853) TCGA-49-AARQ-01 17 67077229 67077229 C A ABCA6 Missense_Mutation p.Q1558H 0.25 deleterious(0.02) probably_damaging(0.947) TCGA-49-AARQ-01 17 67178393 67178393 C A ABCA10 Missense_Mutation p.L890F 0.22 deleterious(0.02) benign(0.151) TCGA-49-AARQ-01 17 6905020 6905020 G C ALOX12 Missense_Mutation p.D351H 0.29 deleterious(0) probably_damaging(0.994) TCGA-49-AARQ-01 17 72363805 72363805 G T GPR142 Missense_Mutation p.R54M 0.45 deleterious_low_confidence(0) benign(0.133) TCGA-49-AARQ-01 17 72915572 72915572 C A USH1G Silent p.P453P 0.24 TCGA-49-AARQ-01 17 72915573 72915573 G A USH1G Missense_Mutation p.P453L 0.26 deleterious(0) possibly_damaging(0.844) TCGA-49-AARQ-01 17 7365710 7365710 C A ZBTB4 Missense_Mutation p.G864V 0.17 benign(0.003) TCGA-49-AARQ-01 17 7578457 7578457 C A TP53 Missense_Mutation p.R158L 0.46 deleterious(0) probably_damaging(0.986) TCGA-49-AARQ-01 17 78326614 78326614 C A RNF213 Intron 0.19 TCGA-49-AARQ-01 17 78341577 78341577 G T RNF213 Silent p.T3967T 0.19 TCGA-49-AARQ-01 17 78346427 78346427 G A RNF213 Missense_Mutation p.R4215Q 0.31 benign(0.002) TCGA-49-AARQ-01 17 9395234 9395234 C A STX8 Missense_Mutation p.Q151H 0.56 deleterious(0) possibly_damaging(0.879) TCGA-49-AARQ-01 18 14542990 14542990 G T POTEC Silent p.S52S 0.09 TCGA-49-AARQ-01 18 23614969 23614969 C T SS18 Missense_Mutation p.G366S 0.24 deleterious_low_confidence(0) benign(0.194) TCGA-49-AARQ-01 18 2732320 2732320 G T SMCHD1 Missense_Mutation p.V1036F 0.42 deleterious(0) possibly_damaging(0.748) TCGA-49-AARQ-01 18 31326509 31326509 G C ASXL3 Missense_Mutation p.D2233H 0.13 probably_damaging(1) TCGA-49-AARQ-01 18 31326510 31326510 A T ASXL3 Missense_Mutation p.D2233V 0.13 probably_damaging(1) TCGA-49-AARQ-01 18 31599316 31599316 T C NOL4 Missense_Mutation p.K341R 0.33 tolerated_low_confidence(0.3) probably_damaging(0.996) TCGA-49-AARQ-01 18 44560210 44560210 G T TCEB3B Missense_Mutation p.P476T 0.17 deleterious(0.03) benign(0.014) TCGA-49-AARQ-01 18 5438071 5438071 G T EPB41L3 Missense_Mutation p.P190T 0.21 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 18 54547351 54547351 G T WDR7 Missense_Mutation p.G1161W 0.11 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 18 54814912 54814912 G C BOD1L2 Silent p.V123V 0.16 TCGA-49-AARQ-01 18 7023302 7023302 G A LAMA1 Silent p.N854N 0.12 TCGA-49-AARQ-01 18 7040091 7040091 C A LAMA1 Missense_Mutation p.G469V 0.32 tolerated(0.09) benign(0.1) TCGA-49-AARQ-01 18 756661 756661 C A YES1 Missense_Mutation p.S56I 0.15 tolerated(0.08) benign(0.244) TCGA-49-AARQ-01 19 12812659 12812659 C A TNPO2 Silent p.T806T 0.25 TCGA-49-AARQ-01 19 15131379 15131379 G T CCDC105 Missense_Mutation p.R261L 0.22 deleterious(0.01) probably_damaging(0.976) TCGA-49-AARQ-01 19 15303199 15303199 C A NOTCH3 Missense_Mutation p.R110L 0.24 tolerated(0.65) possibly_damaging(0.828) TCGA-49-AARQ-01 19 17039853 17039853 T A CPAMD8 Missense_Mutation p.S1062C 0.29 deleterious(0.01) probably_damaging(0.981) TCGA-49-AARQ-01 19 17476548 17476548 C A PLVAP Missense_Mutation p.R242S 0.11 deleterious(0) possibly_damaging(0.876) TCGA-49-AARQ-01 19 21605911 21605911 G T ZNF493 Missense_Mutation p.Q150H 0.21 tolerated(0.16) possibly_damaging(0.784) TCGA-49-AARQ-01 19 22836776 22836776 C A ZNF492 Missense_Mutation p.P30H 0.38 deleterious(0.01) probably_damaging(0.953) TCGA-49-AARQ-01 19 30935649 30935649 G T ZNF536 Missense_Mutation p.V394F 0.20 deleterious(0) probably_damaging(0.999) TCGA-49-AARQ-01 19 32844664 32844664 G T ZNF507 Nonsense_Mutation p.G310* 0.39 TCGA-49-AARQ-01 19 33119042 33119042 G A ANKRD27 Missense_Mutation p.P456L 0.17 tolerated(0.06) possibly_damaging(0.908) TCGA-49-AARQ-01 19 33639786 33639786 G T WDR88 Nonsense_Mutation p.E217* 0.46 TCGA-49-AARQ-01 19 37117923 37117923 C A ZNF382 Missense_Mutation p.T375K 0.40 deleterious(0) probably_damaging(0.997) TCGA-49-AARQ-01 19 37405925 37405925 C A ZNF829 Splice_Site p.X94_splice 0.31 TCGA-49-AARQ-01 19 37854209 37854209 A G HKR1 Silent p.R504R 0.20 TCGA-49-AARQ-01 19 37975360 37975360 G T ZNF570 Missense_Mutation p.C279F 0.14 deleterious(0) probably_damaging(0.999) TCGA-49-AARQ-01 19 38911735 38911735 G C RASGRP4 Nonsense_Mutation p.S105* 0.17 TCGA-49-AARQ-01 19 39406762 39406762 C G SARS2 Missense_Mutation p.S423T 0.41 deleterious(0.02) possibly_damaging(0.564) TCGA-49-AARQ-01 19 40411851 40411851 G T FCGBP Missense_Mutation p.H1259Q 0.50 probably_damaging(1) TCGA-49-AARQ-01 19 40412114 40412114 A T FCGBP Missense_Mutation p.C1172S 0.28 probably_damaging(0.999) TCGA-49-AARQ-01 19 41084087 41084087 T A SHKBP1 Missense_Mutation p.H96Q 0.19 deleterious(0.02) benign(0.351) TCGA-49-AARQ-01 19 43406561 43406561 C G PSG6 3'Flank 0.33 TCGA-49-AARQ-01 19 43699225 43699225 C T PSG4 Missense_Mutation p.E304K 0.21 tolerated(0.05) possibly_damaging(0.621) TCGA-49-AARQ-01 19 4409381 4409381 G T CHAF1A Missense_Mutation p.R195S 0.24 tolerated_low_confidence(0.28) unknown(0) TCGA-49-AARQ-01 19 4409421 4409421 G A CHAF1A Missense_Mutation p.E209K 0.21 tolerated_low_confidence(0.57) unknown(0) TCGA-49-AARQ-01 19 44251949 44251949 C A SMG9 Missense_Mutation p.G109V 0.27 deleterious_low_confidence(0.04) benign(0.368) TCGA-49-AARQ-01 19 44351543 44351543 G T ZNF283 Nonsense_Mutation p.E264* 0.42 TCGA-49-AARQ-01 19 45406266 45406266 C T TOMM40 Intron 0.36 TCGA-49-AARQ-01 19 45899633 45899633 C A PPP1R13L Silent p.A258A 0.32 TCGA-49-AARQ-01 19 46094888 46094888 G T GPR4 Missense_Mutation p.H79Q 0.50 tolerated(1) benign(0.175) TCGA-49-AARQ-01 19 47774754 47774754 G T CCDC9 Missense_Mutation p.S472I 0.38 tolerated(0.18) unknown(0) TCGA-49-AARQ-01 19 48967517 48967517 G T KCNJ14 Missense_Mutation p.R265L 0.19 deleterious(0) probably_damaging(0.999) TCGA-49-AARQ-01 19 51920654 51920654 G T SIGLEC10 Missense_Mutation p.L35M 0.24 deleterious(0) probably_damaging(0.998) TCGA-49-AARQ-01 19 53578394 53578394 C A ZNF160 Nonsense_Mutation p.E20* 0.36 TCGA-49-AARQ-01 19 53958665 53958665 G A ZNF761 RNA 0.20 TCGA-49-AARQ-01 19 54135338 54135338 C A DPRX 5'UTR 0.35 TCGA-49-AARQ-01 19 54802009 54802009 C A LILRA3 Silent p.G393G 0.43 TCGA-49-AARQ-01 19 54802174 54802174 T A LILRA3 Silent p.S338S 0.33 TCGA-49-AARQ-01 19 54848884 54848884 C A LILRA4 Missense_Mutation p.D247Y 0.39 deleterious(0) probably_damaging(0.997) TCGA-49-AARQ-01 19 55175851 55175851 G T LILRB4 Silent p.G190G 0.18 TCGA-49-AARQ-01 19 55439099 55439099 C A NLRP7 Missense_Mutation p.G952V 0.17 tolerated(0.05) benign(0.04) TCGA-49-AARQ-01 19 55815116 55815116 T C BRSK1 Missense_Mutation p.L403P 0.49 deleterious(0.03) possibly_damaging(0.766) TCGA-49-AARQ-01 19 56515108 56515108 C A NLRP5 Missense_Mutation p.T30N 0.20 tolerated_low_confidence(0.21) benign(0.097) TCGA-49-AARQ-01 19 57328281 57328281 C A PEG3 Missense_Mutation p.C510F 0.25 deleterious(0) probably_damaging(0.997) TCGA-49-AARQ-01 19 57647450 57647450 G T ZIM3 Missense_Mutation p.D85E 0.21 tolerated(0.83) benign(0.122) TCGA-49-AARQ-01 19 58132175 58132175 A T ZNF134 Missense_Mutation p.R230W 0.14 deleterious(0) probably_damaging(0.963) TCGA-49-AARQ-01 19 58153536 58153536 G C ZNF211 Missense_Mutation p.G626A 0.22 tolerated(0.12) benign(0.005) TCGA-49-AARQ-01 19 613433 613433 C A HCN2 Missense_Mutation p.S590R 0.48 deleterious(0.04) benign(0.32) TCGA-49-AARQ-01 19 6270707 6270707 C T MLLT1 Missense_Mutation p.E26K 0.12 deleterious(0) possibly_damaging(0.837) TCGA-49-AARQ-01 19 7172367 7172367 T A INSR Missense_Mutation p.Y401F 0.16 tolerated(1) probably_damaging(0.999) TCGA-49-AARQ-01 19 8152087 8152087 C A FBN3 Nonsense_Mutation p.E2210* 0.29 TCGA-49-AARQ-01 19 8183875 8183875 G A FBN3 Silent p.L1081L 0.14 TCGA-49-AARQ-01 19 8563380 8563380 G C PRAM1 Missense_Mutation p.P438A 0.29 tolerated(0.08) probably_damaging(0.946) TCGA-49-AARQ-01 19 8564200 8564200 G T PRAM1 Silent p.A164A 0.20 TCGA-49-AARQ-01 19 8645886 8645886 T C ADAMTS10 Missense_Mutation p.E1068G 0.44 deleterious(0) probably_damaging(0.982) TCGA-49-AARQ-01 19 8661231 8661231 G T ADAMTS10 Missense_Mutation p.L384M 0.58 deleterious(0) probably_damaging(0.992) TCGA-49-AARQ-01 19 8807936 8807936 G T ACTL9 Silent p.A372A 0.43 TCGA-49-AARQ-01 19 8959698 8959698 G T MUC16 Silent p.T14478T 0.72 TCGA-49-AARQ-01 19 9048586 9048586 G T MUC16 Silent p.T11015T 0.40 TCGA-49-AARQ-01 19 9058618 9058618 C A MUC16 Missense_Mutation p.G9610C 0.23 unknown(0) TCGA-49-AARQ-01 19 9061147 9061147 T A MUC16 Missense_Mutation p.T8767S 0.16 unknown(0) TCGA-49-AARQ-01 19 9073633 9073633 C A MUC16 Nonsense_Mutation p.E4605* 0.29 TCGA-49-AARQ-01 1 100983869 100983869 C G CDC14A 3'UTR 0.14 TCGA-49-AARQ-01 1 102302556 102302556 C A OLFM3 Missense_Mutation p.W32L 0.59 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-49-AARQ-01 1 109265070 109265070 G C FNDC7 Missense_Mutation p.D238H 0.25 deleterious(0.03) possibly_damaging(0.469) TCGA-49-AARQ-01 1 110163646 110163646 G T AMPD2 Missense_Mutation p.R4L 0.48 tolerated_low_confidence(0.17) benign(0) TCGA-49-AARQ-01 1 110294319 110294319 A T EPS8L3 Missense_Mutation p.L508Q 0.39 deleterious(0.01) benign(0.377) TCGA-49-AARQ-01 1 11097861 11097861 A T MASP2 Silent p.P299P 0.50 TCGA-49-AARQ-01 1 114380671 114380671 G C PTPN22 Missense_Mutation p.P451A 0.26 deleterious(0.01) possibly_damaging(0.751) TCGA-49-AARQ-01 1 12855947 12855947 G A PRAMEF1 Silent p.L409L 0.39 TCGA-49-AARQ-01 1 12939420 12939420 G A PRAMEF4 Missense_Mutation p.P461L 0.51 deleterious(0.04) possibly_damaging(0.597) TCGA-49-AARQ-01 1 13695834 13695834 G T PRAMEF19 Silent p.S377S 0.15 TCGA-49-AARQ-01 1 151288293 151288293 T C PI4KB Missense_Mutation p.D234G 0.57 deleterious(0.03) probably_damaging(0.992) TCGA-49-AARQ-01 1 152284277 152284277 G T FLG Missense_Mutation p.P1029T 0.51 probably_damaging(0.977) TCGA-49-AARQ-01 1 152856973 152856973 G T SMCP Missense_Mutation p.Q25H 0.53 tolerated(0.17) benign(0.387) TCGA-49-AARQ-01 1 155730294 155730294 G A GON4L Nonsense_Mutation p.Q1684* 0.23 TCGA-49-AARQ-01 1 155730376 155730376 G A GON4L Silent p.I1656I 0.17 TCGA-49-AARQ-01 1 155730379 155730379 G A GON4L Silent p.V1655V 0.17 TCGA-49-AARQ-01 1 155732155 155732155 G C GON4L Missense_Mutation p.I1579M 0.33 tolerated(0.33) possibly_damaging(0.844) TCGA-49-AARQ-01 1 155736268 155736268 G A GON4L Missense_Mutation p.S999L 0.17 tolerated(0.09) probably_damaging(0.962) TCGA-49-AARQ-01 1 156941544 156941544 C A ARHGEF11 Missense_Mutation p.R216L 0.16 deleterious(0) benign(0.107) TCGA-49-AARQ-01 1 157490899 157490899 G A FCRL5 Missense_Mutation p.S808F 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-49-AARQ-01 1 157514800 157514800 G A FCRL5 Missense_Mutation p.A127V 0.20 tolerated(0.16) benign(0.072) TCGA-49-AARQ-01 1 157557729 157557729 C A FCRL4 Missense_Mutation p.G163V 0.35 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 1 157771793 157771793 C A FCRL1 Silent p.L266L 0.41 TCGA-49-AARQ-01 1 158450253 158450253 C A OR10R2 Missense_Mutation p.H196N 0.31 deleterious(0.01) possibly_damaging(0.67) TCGA-49-AARQ-01 1 158613109 158613109 G T SPTA1 Intron 0.19 TCGA-49-AARQ-01 1 158812016 158812016 A T MNDA Missense_Mutation p.I25F 0.55 tolerated(0.23) possibly_damaging(0.713) TCGA-49-AARQ-01 1 159033403 159033403 A G AIM2 Missense_Mutation p.V293A 0.15 deleterious(0.04) benign(0.244) TCGA-49-AARQ-01 1 159175648 159175648 C G DARC Missense_Mutation p.A142G 0.48 tolerated(0.06) probably_damaging(0.999) TCGA-49-AARQ-01 1 160390222 160390222 G C VANGL2 Missense_Mutation p.W274C 0.56 deleterious(0.04) probably_damaging(0.979) TCGA-49-AARQ-01 1 161141693 161141693 G A B4GALT3 Silent p.F365F 0.23 TCGA-49-AARQ-01 1 165398067 165398067 G T RXRG Silent p.P62P 0.15 TCGA-49-AARQ-01 1 16632295 16632295 T A FBXO42 Intron 0.74 TCGA-49-AARQ-01 1 167038236 167038236 C A GPA33 Missense_Mutation p.G113V 0.25 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 1 169660945 169660945 T C SELL Splice_Site p.X380_splice 0.31 TCGA-49-AARQ-01 1 174417712 174417712 C T GPR52 Missense_Mutation p.P155S 0.12 tolerated(0.05) probably_damaging(0.943) TCGA-49-AARQ-01 1 176525904 176525904 G T PAPPA2 Missense_Mutation p.G149V 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.49) TCGA-49-AARQ-01 1 176563702 176563702 G A PAPPA2 Nonsense_Mutation p.W321* 0.20 TCGA-49-AARQ-01 1 178754731 178754731 A G RALGPS2 Missense_Mutation p.I68V 0.48 deleterious(0.02) possibly_damaging(0.898) TCGA-49-AARQ-01 1 179783224 179783224 C T FAM163A Missense_Mutation p.P135L 0.44 tolerated(0.98) benign(0.002) TCGA-49-AARQ-01 1 182354984 182354984 C G GLUL Missense_Mutation p.G172R 0.47 deleterious(0) probably_damaging(0.945) TCGA-49-AARQ-01 1 196448316 196448316 C A KCNT2 Missense_Mutation p.S126I 0.16 deleterious(0.01) probably_damaging(0.922) TCGA-49-AARQ-01 1 196964972 196964972 G T CFHR5 Missense_Mutation p.G245W 0.17 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 1 197065128 197065128 C A ASPM Missense_Mutation p.R2996L 0.19 deleterious(0.02) benign(0.1) TCGA-49-AARQ-01 1 197881633 197881633 C A LHX9 5'Flank 0.50 TCGA-49-AARQ-01 1 201336913 201336913 G T TNNT2 Missense_Mutation p.A52E 0.47 tolerated(1) unknown(0) TCGA-49-AARQ-01 1 205631984 205631984 T A SLC45A3 Missense_Mutation p.E312V 0.62 tolerated(0.33) benign(0.02) TCGA-49-AARQ-01 1 206781592 206781592 T C EIF2D Missense_Mutation p.N140S 0.42 tolerated(0.09) benign(0.021) TCGA-49-AARQ-01 1 21031016 21031016 C A KIF17 Silent p.L349L 0.66 TCGA-49-AARQ-01 1 211280670 211280670 C A KCNH1 Silent p.V43V 0.18 TCGA-49-AARQ-01 1 214706355 214706355 C A PTPN14 Intron 0.33 TCGA-49-AARQ-01 1 220379300 220379300 C A RAB3GAP2 Nonsense_Mutation p.G221* 0.17 TCGA-49-AARQ-01 1 222794585 222794585 A G MIA3 Missense_Mutation p.Y73C 0.11 deleterious(0) probably_damaging(0.998) TCGA-49-AARQ-01 1 226046979 226046979 C A TMEM63A Missense_Mutation p.G432W 0.32 deleterious(0) possibly_damaging(0.779) TCGA-49-AARQ-01 1 228335185 228335185 C A GUK1 Silent p.I131I 0.15 TCGA-49-AARQ-01 1 228346682 228346682 G T GJC2 Missense_Mutation p.R408L 0.62 tolerated(0.11) benign(0.033) TCGA-49-AARQ-01 1 231377034 231377034 G T GNPAT 5'UTR 0.27 TCGA-49-AARQ-01 1 232650798 232650798 C T SIPA1L2 Silent p.K96K 0.19 TCGA-49-AARQ-01 1 233497877 233497877 G A MLK4 Missense_Mutation p.E464K 0.56 deleterious(0) probably_damaging(0.999) TCGA-49-AARQ-01 1 236157046 236157046 G T NID1 Missense_Mutation p.A885E 0.50 tolerated(1) benign(0.004) TCGA-49-AARQ-01 1 237870285 237870286 - T RYR2 Frame_Shift_Ins p.N3207Kfs*49 0.38 TCGA-49-AARQ-01 1 240256611 240256611 C T FMN2 Missense_Mutation p.P401L 0.54 unknown(0) TCGA-49-AARQ-01 1 245850099 245850099 G T KIF26B Missense_Mutation p.G1272W 0.33 deleterious(0) unknown(0) TCGA-49-AARQ-01 1 245927451 245927451 C T SMYD3 Silent p.R359R 0.54 TCGA-49-AARQ-01 1 247162704 247162704 C A ZNF695 Nonsense_Mutation p.E69* 0.29 TCGA-49-AARQ-01 1 247162705 247162705 C G ZNF695 Silent p.L68L 0.29 TCGA-49-AARQ-01 1 247588696 247588696 C A NLRP3 Missense_Mutation p.P651T 0.13 tolerated(0.48) possibly_damaging(0.808) TCGA-49-AARQ-01 1 248004397 248004397 G T OR11L1 Missense_Mutation p.P268T 0.14 tolerated(0.59) possibly_damaging(0.597) TCGA-49-AARQ-01 1 248366520 248366520 C G OR2M3 Missense_Mutation p.L51V 0.50 tolerated(0.57) benign(0.023) TCGA-49-AARQ-01 1 248551704 248551704 C G OR2T6 Nonsense_Mutation p.Y265* 0.14 TCGA-49-AARQ-01 1 248813670 248813670 C A OR2T27 Silent p.R172R 0.15 TCGA-49-AARQ-01 1 249208055 249208055 G T PGBD2 5'UTR 0.41 TCGA-49-AARQ-01 1 26629386 26629386 T C UBXN11 5'UTR 0.23 TCGA-49-AARQ-01 1 27734727 27734727 C G WASF2 Missense_Mutation p.E485Q 0.14 deleterious(0.02) unknown(0) TCGA-49-AARQ-01 1 34192212 34192212 C A CSMD2 Missense_Mutation p.A775S 0.23 tolerated(1) benign(0.032) TCGA-49-AARQ-01 1 3564013 3564013 G C WRAP73 Missense_Mutation p.L61V 0.70 tolerated(0.27) benign(0.004) TCGA-49-AARQ-01 1 36226050 36226050 C A CLSPN Missense_Mutation p.R491L 0.07 tolerated(0.08) possibly_damaging(0.556) TCGA-49-AARQ-01 1 36384821 36384821 G T AGO1 Missense_Mutation p.A811S 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-49-AARQ-01 1 39799550 39799550 G T MACF1 Intron 0.58 TCGA-49-AARQ-01 1 45797719 45797719 C A MUTYH Missense_Mutation p.G322C 0.51 deleterious(0.01) possibly_damaging(0.548) TCGA-49-AARQ-01 1 47717260 47717260 C G STIL Missense_Mutation p.E1139Q 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-49-AARQ-01 1 52492949 52492949 C G TXNDC12 Missense_Mutation p.E95Q 0.08 tolerated(0.12) possibly_damaging(0.638) TCGA-49-AARQ-01 1 59248841 59248841 C A JUN 5'UTR 0.58 TCGA-49-AARQ-01 1 59248843 59248843 G A JUN 5'UTR 0.58 TCGA-49-AARQ-01 1 65849997 65849997 C T DNAJC6 Missense_Mutation p.P263L 0.25 deleterious(0) probably_damaging(0.952) TCGA-49-AARQ-01 1 66833441 66833441 G T PDE4B Missense_Mutation p.G483C 0.15 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 1 67795310 67795310 A G IL12RB2 Silent p.Q235Q 0.58 TCGA-49-AARQ-01 1 74835158 74835158 C A FPGT-TNNI3K Missense_Mutation p.P633H 0.52 deleterious(0) probably_damaging(0.996) TCGA-49-AARQ-01 1 7725168 7725168 C G CAMTA1 Missense_Mutation p.A854G 0.49 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-49-AARQ-01 1 78959054 78959054 G A PTGFR Missense_Mutation p.G209E 0.52 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 1 86852705 86852705 C T ODF2L Silent p.E2E 0.11 TCGA-49-AARQ-01 1 86952309 86952309 C A CLCA1 Missense_Mutation p.A352D 0.18 tolerated(0.48) possibly_damaging(0.719) TCGA-49-AARQ-01 1 92177979 92177979 C G TGFBR3 Missense_Mutation p.D663H 0.18 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 1 92195425 92195425 C G TGFBR3 Missense_Mutation p.S225T 0.13 tolerated(0.76) benign(0.103) TCGA-49-AARQ-01 1 92430321 92430321 G A BRDT Silent p.K110K 0.47 TCGA-49-AARQ-01 1 9305017 9305017 G T H6PD Silent p.A8A 0.19 TCGA-49-AARQ-01 1 93812083 93812083 C A DR1 5'UTR 0.29 TCGA-49-AARQ-01 1 9795604 9795604 T A CLSTN1 Missense_Mutation p.M602L 0.66 tolerated(1) benign(0.001) TCGA-49-AARQ-01 1 99771479 99771479 G T LPPR4 Missense_Mutation p.R402L 0.17 deleterious(0.01) benign(0.184) TCGA-49-AARQ-01 1 99772187 99772187 C G LPPR4 Missense_Mutation p.S638C 0.20 deleterious(0) possibly_damaging(0.815) TCGA-49-AARQ-01 20 14307164 14307164 C G FLRT3 Missense_Mutation p.R330P 0.52 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 20 23473685 23473685 C G CST8 Missense_Mutation p.Q108E 0.46 tolerated(0.05) benign(0.064) TCGA-49-AARQ-01 20 34241459 34241459 C A CPNE1 Missense_Mutation p.K2N 0.41 tolerated_low_confidence(0.2) benign(0.031) TCGA-49-AARQ-01 20 37356816 37356816 C T SLC32A1 Missense_Mutation p.T371M 0.13 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 20 37524255 37524255 T A PPP1R16B Missense_Mutation p.H123Q 0.19 tolerated(0.31) possibly_damaging(0.742) TCGA-49-AARQ-01 20 37535630 37535630 G T PPP1R16B Missense_Mutation p.M277I 0.22 tolerated(0.2) benign(0.068) TCGA-49-AARQ-01 20 40790061 40790061 C A PTPRT Silent p.V871V 0.36 TCGA-49-AARQ-01 20 4229079 4229079 C A ADRA1D Missense_Mutation p.D176Y 0.33 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 20 45358045 45358045 G A SLC2A10 Missense_Mutation p.G489S 0.36 tolerated(0.69) possibly_damaging(0.81) TCGA-49-AARQ-01 20 4843491 4843491 C A SLC23A2 Silent p.G473G 0.48 TCGA-49-AARQ-01 20 48522440 48522440 C T SPATA2 Missense_Mutation p.A427T 0.38 tolerated(0.59) benign(0.003) TCGA-49-AARQ-01 20 49575574 49575574 G T MOCS3 Silent p.R65R 0.44 TCGA-49-AARQ-01 20 50235227 50235227 C A ATP9A Missense_Mutation p.R775L 0.19 tolerated(0.09) benign(0.018) TCGA-49-AARQ-01 20 54823797 54823797 C T MC3R 5'UTR 0.21 TCGA-49-AARQ-01 20 55777537 55777537 G T BMP7 Missense_Mutation p.L252M 0.18 tolerated(0.1) benign(0.012) TCGA-49-AARQ-01 20 57767137 57767137 C A ZNF831 Missense_Mutation p.Q355K 0.19 deleterious(0) probably_damaging(0.989) TCGA-49-AARQ-01 20 58443955 58443955 G C SYCP2 Missense_Mutation p.S1256C 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-49-AARQ-01 20 58519420 58519420 A G FAM217B Missense_Mutation p.Y141C 0.57 tolerated(0.19) benign(0.002) TCGA-49-AARQ-01 20 5903148 5903148 A T CHGB Missense_Mutation p.T120S 0.41 tolerated(0.56) benign(0.046) TCGA-49-AARQ-01 20 60737807 60737807 G A SS18L1 Splice_Site p.X126_splice 0.28 TCGA-49-AARQ-01 20 60906137 60906137 C A LAMA5 Nonsense_Mutation p.E1201* 0.24 TCGA-49-AARQ-01 20 61598644 61598644 G T SLC17A9 Intron 0.17 TCGA-49-AARQ-01 20 62891420 62891420 A T PCMTD2 Missense_Mutation p.R34S 0.17 deleterious(0) probably_damaging(0.998) TCGA-49-AARQ-01 21 10933941 10933941 C A TPTE Splice_Site p.X313_splice 0.11 TCGA-49-AARQ-01 21 11047498 11047498 T A BAGE2 RNA 0.04 TCGA-49-AARQ-01 21 31654398 31654398 G T KRTAP24-1 3'UTR 0.38 TCGA-49-AARQ-01 21 32119421 32119421 C A KRTAP21-2 Missense_Mutation p.G34C 0.15 tolerated_low_confidence(0.22) unknown(0) TCGA-49-AARQ-01 21 39947592 39947592 A G ERG Silent p.H11H 0.60 TCGA-49-AARQ-01 21 41561062 41561062 G A DSCAM Silent p.R820R 0.38 TCGA-49-AARQ-01 21 43309335 43309335 C A C2CD2 Silent p.R663R 0.33 TCGA-49-AARQ-01 21 43963548 43963548 G T SLC37A1 Missense_Mutation p.R189I 0.43 deleterious(0) probably_damaging(0.952) TCGA-49-AARQ-01 21 47542787 47542787 A T COL6A2 Splice_Site p.X537_splice 0.42 TCGA-49-AARQ-01 22 20759945 20759945 G A ZNF74 Missense_Mutation p.E208K 0.19 tolerated(0.62) benign(0.002) TCGA-49-AARQ-01 22 21799973 21799973 C T HIC2 Silent p.P263P 0.46 TCGA-49-AARQ-01 22 24761596 24761596 A G SPECC1L Missense_Mutation p.I994V 0.21 deleterious(0.01) benign(0.066) TCGA-49-AARQ-01 22 26769446 26769446 G A SEZ6L Missense_Mutation p.E942K 0.29 tolerated(0.09) benign(0.284) TCGA-49-AARQ-01 22 29837932 29837932 T A RFPL1 Missense_Mutation p.F259I 0.42 deleterious(0.02) possibly_damaging(0.763) TCGA-49-AARQ-01 22 29966455 29966455 C A NIPSNAP1 Silent p.R55R 0.44 TCGA-49-AARQ-01 22 31658604 31658604 G A LIMK2 Silent p.T206T 0.08 TCGA-49-AARQ-01 22 32218753 32218753 G T DEPDC5 Missense_Mutation p.G694V 0.46 tolerated(0.3) benign(0.056) TCGA-49-AARQ-01 22 36960551 36960551 G T CACNG2 Silent p.L273L 0.43 TCGA-49-AARQ-01 22 37771466 37771466 C A ELFN2 Missense_Mutation p.A37S 0.35 deleterious(0) probably_damaging(0.999) TCGA-49-AARQ-01 22 39125579 39125579 G T GTPBP1 Missense_Mutation p.G610V 0.33 deleterious(0.04) benign(0.058) TCGA-49-AARQ-01 22 41548318 41548318 C T EP300 Nonsense_Mutation p.Q1036* 0.52 TCGA-49-AARQ-01 22 45312283 45312283 C A PHF21B Silent p.G147G 0.36 TCGA-49-AARQ-01 2 10140891 10140891 G T GRHL1 3'UTR 0.23 TCGA-49-AARQ-01 2 103124537 103124537 G T SLC9A4 Splice_Site p.X400_splice 0.33 TCGA-49-AARQ-01 2 113190963 113190963 C G RGPD8 Missense_Mutation p.R23P 0.20 tolerated(0.07) benign(0.065) TCGA-49-AARQ-01 2 120194699 120194699 G T TMEM37 Missense_Mutation p.V86L 0.33 tolerated(0.42) benign(0.016) TCGA-49-AARQ-01 2 143799695 143799695 C A KYNU Missense_Mutation p.T451N 0.26 deleterious(0) benign(0.26) TCGA-49-AARQ-01 2 143799696 143799696 C A KYNU Silent p.T451T 0.27 TCGA-49-AARQ-01 2 152512970 152512970 G A NEB Silent p.Y2064Y 0.26 TCGA-49-AARQ-01 2 155307114 155307114 A T GALNT13 3'UTR 0.21 TCGA-49-AARQ-01 2 155555761 155555761 C A KCNJ3 Silent p.G158G 0.39 TCGA-49-AARQ-01 2 163695119 163695119 C A KCNH7 5'UTR 0.50 TCGA-49-AARQ-01 2 168106700 168106700 C A XIRP2 Missense_Mutation p.S2933Y 0.28 probably_damaging(0.909) TCGA-49-AARQ-01 2 172928498 172928498 A T METAP1D Silent p.I86I 0.13 TCGA-49-AARQ-01 2 176948097 176948097 A T EVX2 Silent p.L136L 0.30 TCGA-49-AARQ-01 2 176948210 176948210 G A EVX2 Missense_Mutation p.R99C 0.24 deleterious(0) probably_damaging(0.927) TCGA-49-AARQ-01 2 17877654 17877654 T C SMC6 Missense_Mutation p.K812E 0.32 tolerated(0.1) possibly_damaging(0.629) TCGA-49-AARQ-01 2 179393724 179393724 T G TTN Missense_Mutation p.E35585A 0.14 TCGA-49-AARQ-01 2 182468786 182468786 G T CERKL Missense_Mutation p.L87I 0.26 tolerated(0.22) benign(0.018) TCGA-49-AARQ-01 2 183998312 183998312 C T NUP35 Nonsense_Mutation p.Q120* 0.14 TCGA-49-AARQ-01 2 189599595 189599595 G A DIRC1 Missense_Mutation p.T18I 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.702) TCGA-49-AARQ-01 2 189875508 189875508 C A COL3A1 Silent p.A1382A 0.26 TCGA-49-AARQ-01 2 204360028 204360028 T A RAPH1 Missense_Mutation p.S17C 0.14 probably_damaging(0.998) TCGA-49-AARQ-01 2 207169899 207169899 T A ZDBF2 Missense_Mutation p.V216D 0.16 deleterious(0.01) benign(0.014) TCGA-49-AARQ-01 2 208841790 208841790 C A PLEKHM3 Missense_Mutation p.W377C 0.29 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 2 21229378 21229378 G T APOB Silent p.V3454V 0.23 TCGA-49-AARQ-01 2 21229391 21229391 G A APOB Missense_Mutation p.S3450L 0.19 possibly_damaging(0.841) TCGA-49-AARQ-01 2 21242713 21242713 G T APOB Missense_Mutation p.Q961K 0.25 benign(0.032) TCGA-49-AARQ-01 2 219503067 219503067 C T ZNF142 Missense_Mutation p.G1687S 0.38 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-49-AARQ-01 2 219679278 219679278 T C CYP27A1 Missense_Mutation p.V425A 0.61 tolerated(0.36) benign(0.086) TCGA-49-AARQ-01 2 220379634 220379634 A G ASIC4 Missense_Mutation p.H190R 0.31 tolerated(0.35) benign(0.044) TCGA-49-AARQ-01 2 220379816 220379816 C A ASIC4 Silent p.R251R 0.46 TCGA-49-AARQ-01 2 220404731 220404731 C A CHPF Missense_Mutation p.A568S 0.21 tolerated(0.39) benign(0.006) TCGA-49-AARQ-01 2 227662288 227662288 C A IRS1 Silent p.P389P 0.36 TCGA-49-AARQ-01 2 227964348 227964348 G A COL4A4 Missense_Mutation p.L363F 0.26 benign(0.336) TCGA-49-AARQ-01 2 228176519 228176519 C T COL4A3 Missense_Mutation p.T1649I 0.20 unknown(0) TCGA-49-AARQ-01 2 231108471 231108471 G T SP140 Missense_Mutation p.M172I 0.32 tolerated(0.3) benign(0.001) TCGA-49-AARQ-01 2 231775688 231775688 A T GPR55 5'UTR 0.18 TCGA-49-AARQ-01 2 233681695 233681695 G A GIGYF2 Missense_Mutation p.E796K 0.08 unknown(0) TCGA-49-AARQ-01 2 235404824 235404824 G A ARL4C Missense_Mutation p.P136L 0.16 deleterious(0.05) benign(0.129) TCGA-49-AARQ-01 2 241689861 241689861 C A KIF1A Missense_Mutation p.V988F 0.42 deleterious(0) possibly_damaging(0.862) TCGA-49-AARQ-01 2 24523004 24523004 C G ITSN2 Missense_Mutation p.R373P 0.32 deleterious(0) probably_damaging(0.972) TCGA-49-AARQ-01 2 26706417 26706417 G T OTOF Missense_Mutation p.S435R 0.09 deleterious(0) possibly_damaging(0.876) TCGA-49-AARQ-01 2 27306735 27306735 A T EMILIN1 Missense_Mutation p.N766Y 0.24 probably_damaging(0.999) TCGA-49-AARQ-01 2 27346888 27346888 C T ABHD1 Silent p.A24A 0.26 TCGA-49-AARQ-01 2 32418963 32418963 G A SLC30A6 Missense_Mutation p.R176K 0.30 deleterious(0.01) possibly_damaging(0.734) TCGA-49-AARQ-01 2 37306407 37306407 C A HEATR5B Missense_Mutation p.G65V 0.33 deleterious(0) probably_damaging(0.999) TCGA-49-AARQ-01 2 42671276 42671276 G C KCNG3 Missense_Mutation p.S370C 0.27 deleterious(0) probably_damaging(0.995) TCGA-49-AARQ-01 2 44502713 44502713 G T SLC3A1 Missense_Mutation p.M13I 0.35 tolerated(0.11) benign(0.002) TCGA-49-AARQ-01 2 49190868 49190868 G T FSHR Silent p.I364I 0.36 TCGA-49-AARQ-01 2 49216169 49216169 G T FSHR Silent p.I157I 0.30 TCGA-49-AARQ-01 2 51254799 51254799 C G NRXN1 Missense_Mutation p.D205H 0.31 tolerated(0.06) possibly_damaging(0.466) TCGA-49-AARQ-01 2 54482934 54482934 C G TSPYL6 Missense_Mutation p.E119Q 0.13 tolerated(0.06) benign(0.203) TCGA-49-AARQ-01 2 63215101 63215101 G T EHBP1 Nonsense_Mutation p.E917* 0.24 TCGA-49-AARQ-01 2 72361919 72361919 C T CYP26B1 Missense_Mutation p.G278R 0.50 deleterious(0) probably_damaging(0.977) TCGA-49-AARQ-01 2 79254937 79254937 C G REG3G Missense_Mutation p.S113C 0.15 tolerated(0.18) benign(0.021) TCGA-49-AARQ-01 2 86254630 86254630 C A POLR1A Silent p.L1693L 0.36 TCGA-49-AARQ-01 2 88387472 88387472 G T SMYD1 Missense_Mutation p.V136L 0.18 tolerated(0.57) benign(0.01) TCGA-49-AARQ-01 2 89512972 89512972 G T IGKV1-27 Missense_Mutation p.T96N 0.30 deleterious(0) probably_damaging(0.964) TCGA-49-AARQ-01 2 90078053 90078053 C A IGKV3D-20 Silent p.T30T 0.39 TCGA-49-AARQ-01 2 90139311 90139311 C A IGKV1D-16 Missense_Mutation p.Q28K 0.25 deleterious(0.01) probably_damaging(0.962) TCGA-49-AARQ-01 3 109027024 109027024 C A DPPA2 Missense_Mutation p.E171D 0.17 tolerated(0.23) possibly_damaging(0.589) TCGA-49-AARQ-01 3 112642555 112642555 C A CD200R1 Missense_Mutation p.S339I 0.18 deleterious(0) possibly_damaging(0.81) TCGA-49-AARQ-01 3 118649069 118649069 G A IGSF11 Missense_Mutation p.R36W 0.16 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 3 123005545 123005545 G T ADCY5 Missense_Mutation p.P1215H 0.10 deleterious(0.01) probably_damaging(0.977) TCGA-49-AARQ-01 3 125874337 125874337 C A ALDH1L1 Missense_Mutation p.V190L 0.40 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-49-AARQ-01 3 129275946 129275946 G A PLXND1 Missense_Mutation p.H1856Y 0.55 tolerated(0.67) probably_damaging(0.987) TCGA-49-AARQ-01 3 133475801 133475801 G A TF Missense_Mutation p.R273Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-49-AARQ-01 3 133614247 133614247 G T RAB6B Missense_Mutation p.Q22K 0.12 deleterious(0) benign(0.438) TCGA-49-AARQ-01 3 142257424 142257424 C A ATR Missense_Mutation p.G1209C 0.50 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 3 142257425 142257425 C A ATR Silent p.L1208L 0.50 TCGA-49-AARQ-01 3 143708723 143708723 A T C3orf58 3'UTR 0.64 TCGA-49-AARQ-01 3 151012297 151012297 C T GPR87 Missense_Mutation p.R246Q 0.26 tolerated(0.57) probably_damaging(0.999) TCGA-49-AARQ-01 3 151474894 151474894 G T AADACL2 Missense_Mutation p.V240F 0.50 tolerated(0.23) benign(0.029) TCGA-49-AARQ-01 3 164905661 164905661 C G SLITRK3 3'UTR 0.48 TCGA-49-AARQ-01 3 164905977 164905977 C A SLITRK3 Missense_Mutation p.G881V 0.55 tolerated_low_confidence(0.49) benign(0.004) TCGA-49-AARQ-01 3 164906367 164906367 C A SLITRK3 Missense_Mutation p.C751F 0.08 deleterious(0) probably_damaging(0.994) TCGA-49-AARQ-01 3 169486106 169486106 C A ACTRT3 Missense_Mutation p.W78L 0.59 deleterious(0) probably_damaging(0.998) TCGA-49-AARQ-01 3 183209891 183209891 C T KLHL6 Missense_Mutation p.G564S 0.14 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 3 183562041 183562041 A C PARL Nonsense_Mutation p.Y195* 0.55 TCGA-49-AARQ-01 3 184566897 184566897 A G VPS8 Missense_Mutation p.S194G 0.08 deleterious(0.01) benign(0.028) TCGA-49-AARQ-01 3 184800747 184800747 T C C3orf70 3'UTR 0.05 TCGA-49-AARQ-01 3 27326118 27326118 C A NEK10 Missense_Mutation p.L663F 0.38 deleterious(0) probably_damaging(0.967) TCGA-49-AARQ-01 3 28365922 28365922 C T AZI2 Missense_Mutation p.E264K 0.20 deleterious(0.01) possibly_damaging(0.699) TCGA-49-AARQ-01 3 38645344 38645344 A T SCN5A Silent p.P583P 0.72 TCGA-49-AARQ-01 3 44541725 44541725 T C ZNF852 Missense_Mutation p.T182A 0.19 deleterious(0.04) benign(0.01) TCGA-49-AARQ-01 3 47451030 47451030 C T PTPN23 Missense_Mutation p.R641W 0.22 unknown(0) TCGA-49-AARQ-01 3 48310838 48310838 G T ZNF589 3'UTR 0.10 TCGA-49-AARQ-01 3 49459872 49459872 A T AMT Silent p.A4A 0.74 TCGA-49-AARQ-01 3 52386573 52386573 A T DNAH1 Silent p.V959V 0.52 TCGA-49-AARQ-01 3 62739253 62739253 G T CADPS Missense_Mutation p.P251T 0.63 tolerated(0.32) possibly_damaging(0.641) TCGA-49-AARQ-01 3 69990454 69990454 T C MITF Missense_Mutation p.M245T 0.15 tolerated(0.05) benign(0.287) TCGA-49-AARQ-01 3 89390905 89390905 G C EPHA3 Missense_Mutation p.R324P 0.55 deleterious(0.02) probably_damaging(0.997) TCGA-49-AARQ-01 3 97983959 97983959 C T OR5H6 Silent p.G277G 0.16 TCGA-49-AARQ-01 3 98109950 98109950 A C OR5K3 Silent p.G147G 0.10 TCGA-49-AARQ-01 4 100477335 100477335 C A TRMT10A Missense_Mutation p.D155Y 0.50 deleterious(0) possibly_damaging(0.883) TCGA-49-AARQ-01 4 100477336 100477336 C A TRMT10A Missense_Mutation p.M154I 0.50 tolerated(0.06) benign(0.262) TCGA-49-AARQ-01 4 104511007 104511007 T A TACR3 Silent p.T410T 0.59 TCGA-49-AARQ-01 4 114274568 114274568 G T ANK2 Missense_Mutation p.E1598D 0.57 possibly_damaging(0.888) TCGA-49-AARQ-01 4 126241476 126241476 G T FAT4 Missense_Mutation p.D1304Y 0.57 possibly_damaging(0.808) TCGA-49-AARQ-01 4 128564902 128564902 C A INTU Missense_Mutation p.P125T 0.16 tolerated(0.06) possibly_damaging(0.743) TCGA-49-AARQ-01 4 151153881 151153881 G T DCLK2 Missense_Mutation p.E506D 0.54 deleterious(0) probably_damaging(0.99) TCGA-49-AARQ-01 4 17528501 17528501 G T CLRN2 Silent p.T165T 0.17 TCGA-49-AARQ-01 4 17528502 17528502 G T CLRN2 Nonsense_Mutation p.E166* 0.17 TCGA-49-AARQ-01 4 175749987 175749987 T A GLRA3 5'UTR 0.54 TCGA-49-AARQ-01 4 1809455 1809455 G T FGFR3 3'UTR 0.17 TCGA-49-AARQ-01 4 21698982 21698982 G T KCNIP4 Intron 0.50 TCGA-49-AARQ-01 4 25005582 25005582 C A LGI2 Nonsense_Mutation p.E377* 0.55 TCGA-49-AARQ-01 4 3201597 3201597 G A HTT Nonsense_Mutation p.W1836* 0.37 TCGA-49-AARQ-01 4 4199176 4199176 C A OTOP1 Missense_Mutation p.R462L 0.42 tolerated(0.08) possibly_damaging(0.619) TCGA-49-AARQ-01 4 4199461 4199461 G T OTOP1 Missense_Mutation p.A367D 0.21 deleterious(0.04) possibly_damaging(0.811) TCGA-49-AARQ-01 4 46060631 46060631 G T GABRG1 Missense_Mutation p.P212T 0.59 tolerated(0.22) possibly_damaging(0.653) TCGA-49-AARQ-01 4 47427841 47427841 C G GABRB1 Missense_Mutation p.R411G 0.16 tolerated(0.05) benign(0.036) TCGA-49-AARQ-01 4 5803820 5803820 G T EVC Missense_Mutation p.Q816H 0.19 deleterious(0.05) probably_damaging(0.965) TCGA-49-AARQ-01 4 6335429 6335429 G T PPP2R2C Missense_Mutation p.R274S 0.12 deleterious(0.01) benign(0.415) TCGA-49-AARQ-01 4 69811143 69811143 C G UGT2A3 Missense_Mutation p.G249R 0.54 tolerated(0.05) probably_damaging(0.988) TCGA-49-AARQ-01 4 70156383 70156383 C G UGT2B28 Missense_Mutation p.I388M 0.59 deleterious(0) probably_damaging(0.981) TCGA-49-AARQ-01 4 74276061 74276061 G A ALB Silent p.S216S 0.19 TCGA-49-AARQ-01 4 89314711 89314711 G A HERC6 Missense_Mutation p.A246T 0.90 tolerated(0.15) benign(0.088) TCGA-49-AARQ-01 4 89317170 89317170 G T HERC6 Missense_Mutation p.G255W 0.51 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 4 90857119 90857119 A T MMRN1 Missense_Mutation p.H763L 0.58 tolerated(0.1) benign(0.118) TCGA-49-AARQ-01 5 112769704 112769704 C T TSSK1B Missense_Mutation p.G278E 0.20 tolerated(1) benign(0.007) TCGA-49-AARQ-01 5 115151930 115151930 C A CDO1 Missense_Mutation p.Q55H 0.47 tolerated(0.28) probably_damaging(0.974) TCGA-49-AARQ-01 5 127728852 127728852 G T FBN2 Missense_Mutation p.Q481K 0.16 tolerated(0.93) benign(0.101) TCGA-49-AARQ-01 5 131298302 131298302 G T ACSL6 Missense_Mutation p.P595T 0.40 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 5 131396446 131396446 C T IL3 Missense_Mutation p.P16L 0.22 deleterious_low_confidence(0) unknown(0) TCGA-49-AARQ-01 5 137488397 137488397 G T BRD8 Missense_Mutation p.S877Y 0.21 deleterious_low_confidence(0) possibly_damaging(0.754) TCGA-49-AARQ-01 5 139892992 139892992 G T ANKHD1 Missense_Mutation p.K1415N 0.50 benign(0.403) TCGA-49-AARQ-01 5 140202865 140202865 C G PCDHA5 Missense_Mutation p.P502R 0.58 deleterious_low_confidence(0.01) possibly_damaging(0.775) TCGA-49-AARQ-01 5 140256308 140256308 C G PCDHA12 Missense_Mutation p.S417R 0.54 tolerated_low_confidence(0.25) benign(0.226) TCGA-49-AARQ-01 5 140475524 140475524 G C PCDHB2 Missense_Mutation p.V384L 0.53 tolerated_low_confidence(0.06) benign(0.019) TCGA-49-AARQ-01 5 140559547 140559547 G T PCDHB8 Silent p.L644L 0.10 TCGA-49-AARQ-01 5 140562098 140562098 A T PCDHB16 5'UTR 0.17 TCGA-49-AARQ-01 5 140751590 140751590 C A PCDHGB3 Missense_Mutation p.S543R 0.29 tolerated(0.07) probably_damaging(0.963) TCGA-49-AARQ-01 5 140751933 140751933 G T PCDHGB3 Missense_Mutation p.V658F 0.34 deleterious(0.02) probably_damaging(0.981) TCGA-49-AARQ-01 5 147594639 147594639 G T SPINK6 3'UTR 0.64 TCGA-49-AARQ-01 5 156186428 156186428 G T SGCD 3'UTR 0.32 TCGA-49-AARQ-01 5 171295624 171295624 T A FBXW11 3'UTR 0.21 TCGA-49-AARQ-01 5 178419051 178419051 C A GRM6 Nonsense_Mutation p.E180* 0.69 TCGA-49-AARQ-01 5 180166441 180166441 C A OR2Y1 Silent p.V206V 0.49 TCGA-49-AARQ-01 5 180218679 180218679 C G MGAT1 Silent p.L431L 0.50 TCGA-49-AARQ-01 5 21817191 21817191 C A CDH12 Nonsense_Mutation p.G289* 0.17 TCGA-49-AARQ-01 5 21975298 21975298 T C CDH12 Missense_Mutation p.E143G 0.22 deleterious(0.01) probably_damaging(0.989) TCGA-49-AARQ-01 5 2749567 2749567 T C IRX2 Missense_Mutation p.D195G 0.12 tolerated(0.06) benign(0.007) TCGA-49-AARQ-01 5 33546186 33546186 C A ADAMTS12 Missense_Mutation p.W1475L 0.23 deleterious(0) possibly_damaging(0.452) TCGA-49-AARQ-01 5 33648968 33648968 G T ADAMTS12 Missense_Mutation p.L480I 0.12 deleterious(0) probably_damaging(0.999) TCGA-49-AARQ-01 5 35965954 35965954 C G UGT3A1 Missense_Mutation p.S126T 0.29 tolerated(0.5) benign(0.232) TCGA-49-AARQ-01 5 41054887 41054887 C A MROH2B Missense_Mutation p.M363I 0.14 deleterious(0.02) benign(0.067) TCGA-49-AARQ-01 5 59899337 59899337 C A DEPDC1B Nonsense_Mutation p.E375* 0.19 TCGA-49-AARQ-01 5 68505708 68505708 C G CENPH 3'UTR 0.33 TCGA-49-AARQ-01 5 68715536 68715536 C T MARVELD2 Silent p.Y108Y 0.27 TCGA-49-AARQ-01 5 72419774 72419774 G A TMEM171 Missense_Mutation p.G192S 0.10 tolerated(1) benign(0.015) TCGA-49-AARQ-01 5 75913471 75913471 T C F2RL2 Missense_Mutation p.D354G 0.44 deleterious(0.01) probably_damaging(0.979) TCGA-49-AARQ-01 5 7695919 7695919 G T ADCY2 Silent p.P308P 0.54 TCGA-49-AARQ-01 5 79616335 79616335 A C SPZ1 Missense_Mutation p.N101H 0.14 tolerated(0.25) possibly_damaging(0.482) TCGA-49-AARQ-01 5 79745436 79745436 C G ZFYVE16 Missense_Mutation p.H1044D 0.17 deleterious(0.01) benign(0.157) TCGA-49-AARQ-01 5 82815202 82815202 C G VCAN Silent p.L359L 0.41 TCGA-49-AARQ-01 5 83525678 83525678 G A EDIL3 Missense_Mutation p.S74L 0.14 deleterious(0.02) benign(0.006) TCGA-49-AARQ-01 6 108985077 108985077 C G FOXO3 Silent p.L347L 0.19 TCGA-49-AARQ-01 6 117591772 117591772 C G VGLL2 Missense_Mutation p.P153R 0.36 deleterious(0) benign(0.209) TCGA-49-AARQ-01 6 131913662 131913662 C A MED23 Intron 0.17 TCGA-49-AARQ-01 6 13365525 13365525 T C GFOD1 Missense_Mutation p.H208R 0.19 tolerated(0.53) benign(0.009) TCGA-49-AARQ-01 6 139565741 139565741 C G TXLNB Missense_Mutation p.M419I 0.28 deleterious(0) probably_damaging(0.973) TCGA-49-AARQ-01 6 14133895 14133895 G T CD83 Missense_Mutation p.R133L 0.42 tolerated(0.56) benign(0.005) TCGA-49-AARQ-01 6 149901821 149901821 G A GINM1 Missense_Mutation p.E227K 0.28 deleterious(0) probably_damaging(0.999) TCGA-49-AARQ-01 6 151687263 151687263 C G ZBTB2 Missense_Mutation p.G313A 0.24 tolerated(0.47) possibly_damaging(0.773) TCGA-49-AARQ-01 6 153078283 153078283 A T VIP 3'UTR 0.14 TCGA-49-AARQ-01 6 159465037 159465037 C A TAGAP Missense_Mutation p.M18I 0.39 deleterious(0) probably_damaging(0.998) TCGA-49-AARQ-01 6 160496975 160496975 C T IGF2R Missense_Mutation p.H1755Y 0.18 tolerated(1) benign(0.007) TCGA-49-AARQ-01 6 1611014 1611014 T A FOXC1 Missense_Mutation p.F112I 0.18 deleterious(0) probably_damaging(0.996) TCGA-49-AARQ-01 6 161143577 161143578 - C PLG Frame_Shift_Ins p.E414Rfs*20 0.19 TCGA-49-AARQ-01 6 163836212 163836212 G T QKI 5'UTR 0.19 TCGA-49-AARQ-01 6 17849701 17849701 C A KIF13A Missense_Mutation p.S246I 0.17 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 6 18222224 18222224 G C KDM1B 3'UTR 0.26 TCGA-49-AARQ-01 6 22569954 22569954 C G HDGFL1 Missense_Mutation p.F50L 0.15 tolerated(0.27) benign(0.026) TCGA-49-AARQ-01 6 24566852 24566852 G T KIAA0319 Silent p.I755I 0.19 TCGA-49-AARQ-01 6 26273342 26273342 A T HIST1H2BI Nonsense_Mutation p.K47* 0.21 TCGA-49-AARQ-01 6 27114944 27114944 G T HIST1H2AH Missense_Mutation p.A13S 0.13 tolerated_low_confidence(0.12) unknown(0) TCGA-49-AARQ-01 6 28227279 28227279 C T NKAPL Missense_Mutation p.H44Y 0.20 tolerated_low_confidence(1) unknown(0) TCGA-49-AARQ-01 6 30860216 30860216 G T DDR1 Silent p.R332R 0.23 TCGA-49-AARQ-01 6 30954942 30954942 C T MUC21 Silent p.A330A 0.36 TCGA-49-AARQ-01 6 31785428 31785428 G T HSPA1A Missense_Mutation p.G632V 0.30 deleterious_low_confidence(0.03) benign(0.012) TCGA-49-AARQ-01 6 32122924 32122924 G T PPT2 Missense_Mutation p.A107S 0.25 tolerated(0.38) benign(0.026) TCGA-49-AARQ-01 6 32155114 32155114 T A PBX2 Missense_Mutation p.Q310L 0.27 deleterious(0.02) benign(0.127) TCGA-49-AARQ-01 6 35391746 35391746 G T PPARD Nonsense_Mutation p.E150* 0.10 TCGA-49-AARQ-01 6 35423809 35423809 G T FANCE Missense_Mutation p.L178F 0.31 deleterious(0.01) probably_damaging(0.92) TCGA-49-AARQ-01 6 44118015 44118015 G T TMEM63B Missense_Mutation p.M525I 0.17 deleterious(0) possibly_damaging(0.703) TCGA-49-AARQ-01 6 51921531 51921531 C G PKHD1 Missense_Mutation p.W553S 0.27 tolerated(1) benign(0) TCGA-49-AARQ-01 6 55922628 55922628 G T COL21A1 Missense_Mutation p.P901T 0.55 tolerated(0.07) unknown(0) TCGA-49-AARQ-01 6 56350268 56350268 G A DST Nonsense_Mutation p.Q4394* 0.33 TCGA-49-AARQ-01 6 6224945 6224945 C A F13A1 Missense_Mutation p.W316L 0.35 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 6 64404502 64404502 G T PHF3 Missense_Mutation p.C843F 0.16 tolerated(0.75) benign(0.001) TCGA-49-AARQ-01 6 7231987 7231987 A T RREB1 Missense_Mutation p.S1219C 0.25 deleterious(0) probably_damaging(0.914) TCGA-49-AARQ-01 6 73900415 73900415 G A KCNQ5 Missense_Mutation p.S585N 0.14 tolerated(0.31) benign(0.444) TCGA-49-AARQ-01 6 76618213 76618213 A G MYO6 Missense_Mutation p.D1094G 0.50 deleterious(0.01) probably_damaging(0.998) TCGA-49-AARQ-01 6 90337325 90337325 G T ANKRD6 Missense_Mutation p.M465I 0.47 tolerated(0.25) benign(0.053) TCGA-49-AARQ-01 6 94066484 94066484 G T EPHA7 Missense_Mutation p.S425R 0.16 deleterious(0) possibly_damaging(0.812) TCGA-49-AARQ-01 6 97063580 97063580 G T FHL5 Missense_Mutation p.G263C 0.11 deleterious(0) probably_damaging(0.975) TCGA-49-AARQ-01 6 99282863 99282863 G A POU3F2 Silent p.Q38Q 0.42 TCGA-49-AARQ-01 7 100189412 100189412 C T FBXO24 Missense_Mutation p.L187F 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.587) TCGA-49-AARQ-01 7 100243954 100243954 A G ACTL6B Missense_Mutation p.M373T 0.50 tolerated(0.12) benign(0.14) TCGA-49-AARQ-01 7 107875031 107875031 G T NRCAM Missense_Mutation p.P76T 0.15 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 7 111400337 111400337 C A DOCK4 Silent p.L1345L 0.17 TCGA-49-AARQ-01 7 112723840 112723840 C A GPR85 Missense_Mutation p.G313W 0.17 deleterious(0.02) benign(0.078) TCGA-49-AARQ-01 7 112723968 112723968 C T GPR85 Missense_Mutation p.R270K 0.13 deleterious(0.03) benign(0.141) TCGA-49-AARQ-01 7 116770554 116770554 G C ST7 Missense_Mutation p.W153C 0.12 deleterious(0.04) probably_damaging(0.937) TCGA-49-AARQ-01 7 121653401 121653401 G T PTPRZ1 Missense_Mutation p.S1434I 0.11 deleterious_low_confidence(0.03) benign(0.333) TCGA-49-AARQ-01 7 122342325 122342325 G C RNF148 Silent p.G160G 0.11 TCGA-49-AARQ-01 7 122342363 122342363 C - RNF148 Frame_Shift_Del p.E148Kfs*3 0.12 TCGA-49-AARQ-01 7 128037040 128037040 T C IMPDH1 Missense_Mutation p.M371V 0.21 deleterious(0) benign(0.12) TCGA-49-AARQ-01 7 128488960 128488960 C A FLNC Silent p.G1617G 0.53 TCGA-49-AARQ-01 7 131193723 131193723 C - PODXL Frame_Shift_Del p.G363Efs*14 0.12 TCGA-49-AARQ-01 7 134896245 134896245 C A WDR91 Missense_Mutation p.A4S 0.26 tolerated(0.07) benign(0.049) TCGA-49-AARQ-01 7 135307538 135307538 G T NUP205 Missense_Mutation p.M1448I 0.17 tolerated(0.16) benign(0.145) TCGA-49-AARQ-01 7 137330223 137330223 C T DGKI Missense_Mutation p.G267S 0.41 tolerated(0.15) possibly_damaging(0.9) TCGA-49-AARQ-01 7 142247375 142247375 G T TRBV7-3 Silent p.P27P 0.08 TCGA-49-AARQ-01 7 142723822 142723822 T C OR9A2 Missense_Mutation p.N133S 0.53 tolerated(0.29) benign(0.057) TCGA-49-AARQ-01 7 147600678 147600678 G T CNTNAP2 Missense_Mutation p.W707L 0.61 deleterious(0) possibly_damaging(0.905) TCGA-49-AARQ-01 7 148112638 148112638 C G CNTNAP2 Missense_Mutation p.A1309G 0.07 tolerated(0.17) benign(0.019) TCGA-49-AARQ-01 7 150774445 150774445 C T FASTK Missense_Mutation p.E415K 0.08 tolerated(0.15) probably_damaging(0.998) TCGA-49-AARQ-01 7 157367099 157367099 G T PTPRN2 Intron 0.17 TCGA-49-AARQ-01 7 21942672 21942672 C T CDCA7L Missense_Mutation p.G420S 0.14 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 7 27237922 27237922 C T HOXA13 Silent p.R354R 0.25 TCGA-49-AARQ-01 7 27237923 27237923 C T HOXA13 Missense_Mutation p.R354Q 0.25 deleterious(0.03) probably_damaging(0.996) TCGA-49-AARQ-01 7 37934184 37934184 T C NME8 Missense_Mutation p.Y506H 0.31 deleterious(0) probably_damaging(0.997) TCGA-49-AARQ-01 7 38471813 38471813 C A AMPH Splice_Site p.X379_splice 0.06 TCGA-49-AARQ-01 7 39504011 39504011 G T POU6F2 Missense_Mutation p.G601V 0.24 deleterious(0) unknown(0) TCGA-49-AARQ-01 7 42079816 42079816 C A GLI3 Missense_Mutation p.R283S 0.32 deleterious(0) probably_damaging(0.997) TCGA-49-AARQ-01 7 45931595 45931595 G A IGFBP1 Missense_Mutation p.G195E 0.31 deleterious(0.04) possibly_damaging(0.893) TCGA-49-AARQ-01 7 45954475 45954475 C A IGFBP3 Missense_Mutation p.G280C 0.40 deleterious(0) probably_damaging(0.994) TCGA-49-AARQ-01 7 48313167 48313167 C G ABCA13 Missense_Mutation p.L1302V 0.33 benign(0) TCGA-49-AARQ-01 7 48443466 48443466 G T ABCA13 Missense_Mutation p.K4020N 0.20 possibly_damaging(0.894) TCGA-49-AARQ-01 7 54612443 54612443 G T VSTM2A Nonsense_Mutation p.E70* 0.24 TCGA-49-AARQ-01 7 55914215 55914215 C A SEPT14 Missense_Mutation p.C57F 0.26 deleterious(0) probably_damaging(0.994) TCGA-49-AARQ-01 7 64168157 64168157 G T ZNF107 Missense_Mutation p.G492V 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-49-AARQ-01 7 6790940 6790940 G T RSPH10B2 5'Flank 0.14 TCGA-49-AARQ-01 7 72743383 72743383 G A FKBP6 Missense_Mutation p.E66K 0.12 deleterious(0.02) probably_damaging(0.986) TCGA-49-AARQ-01 7 73811563 73811563 G T CLIP2 Silent p.L960L 0.33 TCGA-49-AARQ-01 7 73811564 73811564 G T CLIP2 Splice_Site p.X960_splice 0.33 TCGA-49-AARQ-01 7 80374286 80374286 C A SEMA3C Missense_Mutation p.G727V 0.12 tolerated(0.11) probably_damaging(0.999) TCGA-49-AARQ-01 7 81714100 81714100 C A CACNA2D1 Missense_Mutation p.A215S 0.51 tolerated(0.23) probably_damaging(0.928) TCGA-49-AARQ-01 7 82997086 82997086 T A SEMA3E Missense_Mutation p.Q715L 0.11 deleterious(0) probably_damaging(0.996) TCGA-49-AARQ-01 7 92731015 92731015 C A SAMD9 Missense_Mutation p.G1466W 0.41 deleterious(0.01) probably_damaging(0.95) TCGA-49-AARQ-01 7 92731016 92731016 C A SAMD9 Missense_Mutation p.K1465N 0.41 tolerated(0.1) benign(0.007) TCGA-49-AARQ-01 7 97920546 97920546 C G BRI3 Silent p.T123T 0.21 TCGA-49-AARQ-01 7 99564723 99564723 A G AZGP1 Missense_Mutation p.V267A 0.14 tolerated(0.79) benign(0.28) TCGA-49-AARQ-01 8 103244522 103244522 G A RRM2B Missense_Mutation p.S20L 0.15 tolerated_low_confidence(0.32) benign(0.005) TCGA-49-AARQ-01 8 103298620 103298620 C A UBR5 Missense_Mutation p.S1728I 0.14 deleterious(0.04) benign(0.085) TCGA-49-AARQ-01 8 103316395 103316395 C T UBR5 Missense_Mutation p.A944T 0.24 tolerated(0.44) benign(0.444) TCGA-49-AARQ-01 8 10468326 10468326 C A RP1L1 Missense_Mutation p.Q1094H 0.26 benign(0.002) TCGA-49-AARQ-01 8 108297043 108297043 C G ANGPT1 Missense_Mutation p.G358R 0.15 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 8 110573134 110573134 C G EBAG9 Missense_Mutation p.A166G 0.22 deleterious(0.04) benign(0.079) TCGA-49-AARQ-01 8 11400758 11400758 C A BLK Missense_Mutation p.P9T 0.12 tolerated(0.35) possibly_damaging(0.641) TCGA-49-AARQ-01 8 122641065 122641065 C A HAS2 Silent p.T172T 0.18 TCGA-49-AARQ-01 8 125988838 125988838 G T ZNF572 Nonsense_Mutation p.E110* 0.12 TCGA-49-AARQ-01 8 12958261 12958261 C A DLC1 Missense_Mutation p.D529Y 0.50 deleterious(0) probably_damaging(0.992) TCGA-49-AARQ-01 8 139164905 139164905 T A FAM135B Missense_Mutation p.I605F 0.17 tolerated(0.71) benign(0.003) TCGA-49-AARQ-01 8 139164906 139164906 G T FAM135B Silent p.A604A 0.17 TCGA-49-AARQ-01 8 139701166 139701166 A T COL22A1 Silent p.G952G 0.19 TCGA-49-AARQ-01 8 142228417 142228417 C A SLC45A4 Missense_Mutation p.R390L 0.13 tolerated(0.06) probably_damaging(1) TCGA-49-AARQ-01 8 143562717 143562717 T A BAI1 Missense_Mutation p.M644K 0.16 tolerated(0.16) benign(0.042) TCGA-49-AARQ-01 8 143784531 143784531 G T LY6K Missense_Mutation p.M80I 0.21 tolerated(0.41) benign(0.008) TCGA-49-AARQ-01 8 143994076 143994076 T C CYP11B2 Missense_Mutation p.Y423C 0.19 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 8 1497159 1497159 C A DLGAP2 Missense_Mutation p.H100Q 0.36 tolerated(0.12) possibly_damaging(0.663) TCGA-49-AARQ-01 8 22067195 22067195 A T BMP1 Missense_Mutation p.Y938F 0.52 tolerated(1) benign(0.013) TCGA-49-AARQ-01 8 22171870 22171870 C T PIWIL2 Silent p.I673I 0.19 TCGA-49-AARQ-01 8 27729459 27729459 T A SCARA5 Nonsense_Mutation p.R494* 0.21 TCGA-49-AARQ-01 8 30701714 30701714 G T TEX15 Nonsense_Mutation p.S1607* 0.32 TCGA-49-AARQ-01 8 3081282 3081282 G T CSMD1 Missense_Mutation p.P1485T 0.15 benign(0.044) TCGA-49-AARQ-01 8 38066770 38066770 A T BAG4 Silent p.P291P 0.27 TCGA-49-AARQ-01 8 41575710 41575710 G A ANK1 Missense_Mutation p.P407S 0.17 deleterious(0) probably_damaging(0.999) TCGA-49-AARQ-01 8 42234461 42234461 C - DKK4 Frame_Shift_Del p.A35Pfs*52 0.24 TCGA-49-AARQ-01 8 43155665 43155665 G T RNU6-104P 5'Flank 0.11 TCGA-49-AARQ-01 8 51449338 51449338 C A SNTG1 Missense_Mutation p.S217Y 0.22 deleterious(0) probably_damaging(0.984) TCGA-49-AARQ-01 8 52320673 52320673 G T PXDNL Missense_Mutation p.L1171I 0.21 deleterious(0.03) probably_damaging(0.913) TCGA-49-AARQ-01 8 53126846 53126846 C A ST18 5'UTR 0.26 TCGA-49-AARQ-01 8 54141974 54141974 C T OPRK1 Silent p.R342R 0.42 TCGA-49-AARQ-01 8 73932968 73932968 G C TERF1 Silent p.L155L 0.14 TCGA-49-AARQ-01 8 77618583 77618583 G T ZFHX4 Nonsense_Mutation p.G754* 0.17 TCGA-49-AARQ-01 8 77767516 77767516 C A ZFHX4 Missense_Mutation p.P2787T 0.22 benign(0.3) TCGA-49-AARQ-01 8 94934291 94934291 C A PDP1 Missense_Mutation p.P27T 0.06 tolerated_low_confidence(0.36) benign(0.059) TCGA-49-AARQ-01 8 99015952 99015952 G C MATN2 Missense_Mutation p.S423T 0.16 deleterious(0.04) benign(0.304) TCGA-49-AARQ-01 8 99440431 99440431 C A KCNS2 Missense_Mutation p.P75H 0.24 deleterious(0) probably_damaging(0.999) TCGA-49-AARQ-01 9 100070086 100070086 G A CCDC180 Missense_Mutation p.E17K 0.21 tolerated_low_confidence(0.7) benign(0.005) TCGA-49-AARQ-01 9 101765843 101765843 G A COL15A1 Missense_Mutation p.E392K 0.16 tolerated_low_confidence(0.47) benign(0.004) TCGA-49-AARQ-01 9 107331853 107331853 C A OR13C8 Silent p.I135I 0.22 TCGA-49-AARQ-01 9 107380057 107380057 G T OR13C9 Silent p.P143P 0.45 TCGA-49-AARQ-01 9 109690881 109690881 T C ZNF462 Missense_Mutation p.V1563A 0.46 benign(0.109) TCGA-49-AARQ-01 9 113496543 113496543 T A MUSK Missense_Mutation p.I214N 0.21 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 9 115422188 115422188 G T KIAA1958 Missense_Mutation p.G664C 0.52 tolerated(0.06) possibly_damaging(0.472) TCGA-49-AARQ-01 9 118997416 118997416 A G PAPPA Splice_Site p.X745_splice 0.18 TCGA-49-AARQ-01 9 119093635 119093635 G T PAPPA Missense_Mutation p.R1087L 0.36 deleterious(0.02) benign(0.004) TCGA-49-AARQ-01 9 131140374 131140374 A T URM1 Missense_Mutation p.Q32L 0.34 deleterious(0.04) possibly_damaging(0.723) TCGA-49-AARQ-01 9 135203635 135203635 G A SETX Missense_Mutation p.T1117I 0.28 tolerated(0.44) benign(0) TCGA-49-AARQ-01 9 135458404 135458404 T A BARHL1 Missense_Mutation p.L74M 0.37 tolerated_low_confidence(0.09) benign(0.014) TCGA-49-AARQ-01 9 135975815 135975815 C A RALGDS Intron 0.17 TCGA-49-AARQ-01 9 138011965 138011965 G A OLFM1 Missense_Mutation p.G449S 0.18 tolerated(0.13) probably_damaging(0.983) TCGA-49-AARQ-01 9 138454184 138454184 C T PAEP Silent p.I47I 0.10 TCGA-49-AARQ-01 9 140777359 140777359 C T CACNA1B Intron 0.09 TCGA-49-AARQ-01 9 18775881 18775881 G T ADAMTSL1 Silent p.L846L 0.50 TCGA-49-AARQ-01 9 19786161 19786161 C A SLC24A2 Missense_Mutation p.W235L 0.40 deleterious(0) probably_damaging(0.999) TCGA-49-AARQ-01 9 32630351 32630351 C T TAF1L Missense_Mutation p.D1743N 0.30 tolerated_low_confidence(0.05) benign(0.25) TCGA-49-AARQ-01 9 32630606 32630606 G T TAF1L Missense_Mutation p.P1658T 0.30 tolerated_low_confidence(0.09) probably_damaging(0.999) TCGA-49-AARQ-01 9 33047270 33047270 G C SMU1 3'UTR 0.26 TCGA-49-AARQ-01 9 35103146 35103146 C G STOML2 5'UTR 0.36 TCGA-49-AARQ-01 9 35107832 35107832 G - FAM214B Frame_Shift_Del p.P147Hfs*50 0.18 TCGA-49-AARQ-01 9 35660643 35660643 C T CCDC107 Missense_Mutation p.R137C 0.13 tolerated(0.08) benign(0.001) TCGA-49-AARQ-01 9 35719532 35719532 C A TLN1 Silent p.V557V 0.43 TCGA-49-AARQ-01 9 35813774 35813774 C G HINT2 Missense_Mutation p.G30A 0.14 tolerated(0.5) unknown(0) TCGA-49-AARQ-01 9 38411480 38411480 C G IGFBPL1 Missense_Mutation p.A252P 0.39 deleterious(0) probably_damaging(0.993) TCGA-49-AARQ-01 9 6328852 6328852 C T TPD52L3 Missense_Mutation p.S86F 0.09 deleterious(0.01) probably_damaging(0.983) TCGA-49-AARQ-01 9 6328907 6328907 C T TPD52L3 Silent p.L104L 0.07 TCGA-49-AARQ-01 9 6329083 6329083 C G TPD52L3 3'UTR 0.12 TCGA-49-AARQ-01 9 70177754 70177754 C A FOXD4L5 Missense_Mutation p.G77V 0.08 deleterious(0.03) possibly_damaging(0.637) TCGA-49-AARQ-01 9 74485144 74485144 C A ABHD17B Missense_Mutation p.G168C 0.47 deleterious(0.02) probably_damaging(0.996) TCGA-49-AARQ-01 9 75545883 75545883 G A ALDH1A1 Missense_Mutation p.S75F 0.26 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 9 79325762 79325762 C G PRUNE2 Silent p.A476A 0.38 TCGA-49-AARQ-01 9 80861637 80861637 A T CEP78 Silent p.L277L 0.47 TCGA-49-AARQ-01 9 86559854 86559854 C A C9orf64 Silent p.T216T 0.23 TCGA-49-AARQ-01 9 97356056 97356056 T A FBP2 5'UTR 0.27 TCGA-49-AARQ-01 9 98209465 98209465 C A PTCH1 Missense_Mutation p.G1358V 0.14 tolerated_low_confidence(0.24) possibly_damaging(0.462) TCGA-49-AARQ-01 X 10058846 10058846 A G WWC3 Missense_Mutation p.Y138C 0.58 deleterious(0) probably_damaging(0.991) TCGA-49-AARQ-01 X 100653874 100653874 C A GLA Missense_Mutation p.D234Y 0.25 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 X 101912693 101912693 A T GPRASP1 Missense_Mutation p.L1284F 0.21 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 X 101972215 101972215 G C GPRASP2 Missense_Mutation p.E806D 0.26 tolerated(0.13) benign(0.12) TCGA-49-AARQ-01 X 102004133 102004133 G C BHLHB9 Silent p.T70T 0.30 TCGA-49-AARQ-01 X 103220267 103220267 C A TMSB15B 3'UTR 0.19 TCGA-49-AARQ-01 X 106229348 106229348 G T MORC4 Silent p.R131R 0.30 TCGA-49-AARQ-01 X 107422492 107422492 C G COL4A6 Missense_Mutation p.G771R 0.35 probably_damaging(1) TCGA-49-AARQ-01 X 107976563 107976563 A G IRS4 Silent p.A1004A 0.40 TCGA-49-AARQ-01 X 110489879 110489879 C A CAPN6 Missense_Mutation p.G618C 0.19 deleterious(0.01) probably_damaging(0.979) TCGA-49-AARQ-01 X 111903926 111903926 A G LHFPL1 Missense_Mutation p.L137S 0.38 tolerated(0.06) possibly_damaging(0.772) TCGA-49-AARQ-01 X 117925723 117925723 A G IL13RA1 Splice_Site p.X398_splice 0.14 TCGA-49-AARQ-01 X 118673611 118673611 C T CXorf56 3'UTR 0.29 TCGA-49-AARQ-01 X 118972016 118972016 T C UPF3B Splice_Site p.X336_splice 0.12 TCGA-49-AARQ-01 X 119513559 119513559 A T ATP1B4 3'UTR 0.30 TCGA-49-AARQ-01 X 125299852 125299852 C A DCAF12L2 Missense_Mutation p.G19V 0.22 deleterious_low_confidence(0.01) benign(0.144) TCGA-49-AARQ-01 X 128599876 128599876 C G SMARCA1 Missense_Mutation p.R921P 0.29 deleterious(0.04) probably_damaging(0.955) TCGA-49-AARQ-01 X 128696412 128696412 G T OCRL Missense_Mutation p.D331Y 0.23 deleterious(0) possibly_damaging(0.903) TCGA-49-AARQ-01 X 129060041 129060041 C T UTP14A Silent p.G632G 0.16 TCGA-49-AARQ-01 X 129148044 129148044 A T BCORL1 Missense_Mutation p.K432N 0.20 probably_damaging(0.999) TCGA-49-AARQ-01 X 129149997 129149997 G T BCORL1 Silent p.R1083R 0.17 TCGA-49-AARQ-01 X 129205078 129205078 T G ELF4 Missense_Mutation p.K249T 0.34 deleterious(0) probably_damaging(0.938) TCGA-49-AARQ-01 X 129205089 129205089 T G ELF4 Missense_Mutation p.K245N 0.31 deleterious(0) probably_damaging(0.999) TCGA-49-AARQ-01 X 129813686 129813686 C T ENOX2 Missense_Mutation p.G126E 0.29 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 X 130420619 130420619 G T IGSF1 Silent p.A10A 0.23 TCGA-49-AARQ-01 X 134989884 134989884 G A SAGE1 Missense_Mutation p.C348Y 0.42 tolerated(1) benign(0.307) TCGA-49-AARQ-01 X 134992247 134992247 C A SAGE1 Silent p.S594S 0.26 TCGA-49-AARQ-01 X 135047217 135047217 A C MMGT1 Missense_Mutation p.L121W 0.14 deleterious_low_confidence(0) unknown(0) TCGA-49-AARQ-01 X 135426743 135426743 C A GPR112 Missense_Mutation p.P293H 0.31 deleterious(0) possibly_damaging(0.887) TCGA-49-AARQ-01 X 135593856 135593856 C A HTATSF1 Missense_Mutation p.A651E 0.27 tolerated_low_confidence(0.16) unknown(0) TCGA-49-AARQ-01 X 135789171 135789171 G TA ARHGEF6 Frame_Shift_Ins p.V316Sfs*13 0.21 TCGA-49-AARQ-01 X 144906276 144906276 C A SLITRK2 Missense_Mutation p.T778N 0.34 deleterious(0.05) benign(0.068) TCGA-49-AARQ-01 X 148048543 148048543 C A AFF2 Missense_Mutation p.A1046E 0.34 deleterious(0.02) possibly_damaging(0.728) TCGA-49-AARQ-01 X 148055085 148055085 C A AFF2 Missense_Mutation p.L1118M 0.41 tolerated(0.4) possibly_damaging(0.877) TCGA-49-AARQ-01 X 150156447 150156447 C A HMGB3 3'UTR 0.25 TCGA-49-AARQ-01 X 152710700 152710700 G C TREX2 Missense_Mutation p.C63W 0.23 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 X 153039357 153039357 G A PLXNB3 Missense_Mutation p.C1131Y 0.17 deleterious(0) probably_damaging(0.996) TCGA-49-AARQ-01 X 153248147 153248147 C G TMEM187 Missense_Mutation p.H212D 0.32 deleterious(0.02) benign(0.361) TCGA-49-AARQ-01 X 153578162 153578162 G T FLNA Silent p.P2469P 0.35 TCGA-49-AARQ-01 X 153581812 153581812 C G FLNA Missense_Mutation p.M1958I 0.30 tolerated(0.24) benign(0) TCGA-49-AARQ-01 X 153582516 153582516 C A FLNA Intron 0.32 TCGA-49-AARQ-01 X 153940898 153940898 G T GAB3 Missense_Mutation p.D225E 0.34 tolerated(0.08) benign(0.102) TCGA-49-AARQ-01 X 154290209 154290209 C A CMC4 Missense_Mutation p.C39F 0.34 deleterious(0.01) probably_damaging(0.982) TCGA-49-AARQ-01 X 21534727 21534727 G T CNKSR2 Missense_Mutation p.R312I 0.43 deleterious(0) probably_damaging(0.997) TCGA-49-AARQ-01 X 26157308 26157308 C A MAGEB18 Missense_Mutation p.S69Y 0.45 tolerated(0.12) benign(0.183) TCGA-49-AARQ-01 X 27766657 27766657 G T DCAF8L2 Nonsense_Mutation p.E549* 0.27 TCGA-49-AARQ-01 X 30872722 30872722 T A TAB3 Missense_Mutation p.T354S 0.55 tolerated(0.49) benign(0.002) TCGA-49-AARQ-01 X 37026510 37026510 G A FAM47C Silent p.R9R 0.64 TCGA-49-AARQ-01 X 46917679 46917679 A T JADE3 Missense_Mutation p.T558S 0.53 tolerated_low_confidence(0.62) benign(0.002) TCGA-49-AARQ-01 X 49067818 49067818 G T CACNA1F Silent p.A1419A 0.46 TCGA-49-AARQ-01 X 49845292 49845292 C G CLCN5 Silent p.L215L 0.42 TCGA-49-AARQ-01 X 50111952 50111952 C T DGKK RNA 0.34 TCGA-49-AARQ-01 X 53106866 53106866 G T GPR173 Missense_Mutation p.A355S 0.70 deleterious_low_confidence(0.01) benign(0.145) TCGA-49-AARQ-01 X 5827144 5827144 C A NLGN4X Silent p.G254G 0.53 TCGA-49-AARQ-01 X 64141825 64141825 C - ZC4H2 Frame_Shift_Del p.A33Lfs*13 0.40 TCGA-49-AARQ-01 X 64737956 64737956 G C LAS1L Missense_Mutation p.T613R 0.31 tolerated(0.35) benign(0.011) TCGA-49-AARQ-01 X 67293031 67293031 C A OPHN1 Missense_Mutation p.R599S 0.30 tolerated(0.13) benign(0.03) TCGA-49-AARQ-01 X 68382496 68382496 C G PJA1 Missense_Mutation p.D196H 0.21 deleterious(0) possibly_damaging(0.67) TCGA-49-AARQ-01 X 69622527 69622527 G T KIF4A Silent p.L867L 0.37 TCGA-49-AARQ-01 X 69647213 69647213 C A GDPD2 Missense_Mutation p.T279K 0.30 deleterious(0) probably_damaging(1) TCGA-49-AARQ-01 X 70073148 70073148 C G TEX11 Missense_Mutation p.D134H 0.28 deleterious(0) possibly_damaging(0.752) TCGA-49-AARQ-01 X 70618463 70618463 T A TAF1 Missense_Mutation p.M1241K 0.22 tolerated(0.17) probably_damaging(0.93) TCGA-49-AARQ-01 X 79698642 79698642 G T FAM46D Missense_Mutation p.V202L 0.25 deleterious(0.02) benign(0.246) TCGA-49-AARQ-01 X 79989675 79989675 C A BRWD3 Missense_Mutation p.R343I 0.19 deleterious(0) probably_damaging(0.993) TCGA-49-AARQ-01 X 84363497 84363497 G A SATL1 Nonsense_Mutation p.Q160* 0.33 TCGA-49-AARQ-01 X 84526168 84526168 C A ZNF711 Missense_Mutation p.F540L 0.33 tolerated(0.06) possibly_damaging(0.716) TCGA-49-AARQ-01 X 85403925 85403925 C A DACH2 Missense_Mutation p.H101N 0.25 deleterious(0) benign(0.216) TCGA-49-AARQ-01 X 86868953 86868953 G T KLHL4 Nonsense_Mutation p.E166* 0.37 TCGA-49-AARQ-01 X 86919793 86919793 C G KLHL4 Missense_Mutation p.T652S 0.29 tolerated(0.65) benign(0.121) TCGA-49-AARQ-01 X 91131798 91131798 C A PCDH11X Missense_Mutation p.L187I 0.26 deleterious(0.01) possibly_damaging(0.764) TCGA-49-AARR-01 10 69299304 69299304 G A CTNNA3 Missense_Mutation p.A139V 0.05 deleterious(0) possibly_damaging(0.798) TCGA-49-AARR-01 19 7795022 7795022 C T CLEC4G Silent p.L170L 0.16 TCGA-49-AARR-01 22 36123092 36123092 C A APOL5 Missense_Mutation p.A326E 0.09 deleterious(0) probably_damaging(0.954) TCGA-4B-A93V-01 10 102505973 102505973 G T PAX2 5'UTR 0.41 TCGA-4B-A93V-01 10 118355816 118355816 G A PNLIPRP1 Missense_Mutation p.G186S 0.24 deleterious(0) probably_damaging(0.922) TCGA-4B-A93V-01 10 134219302 134219302 C T PWWP2B Missense_Mutation p.S433L 0.15 deleterious(0.01) benign(0.09) TCGA-4B-A93V-01 10 15876594 15876594 C A FAM188A Nonsense_Mutation p.E200* 0.32 TCGA-4B-A93V-01 10 37482124 37482124 G T ANKRD30A Missense_Mutation p.R795I 0.39 tolerated(0.09) benign(0.003) TCGA-4B-A93V-01 10 50955175 50955175 G A OGDHL Missense_Mutation p.S356L 0.08 deleterious(0) possibly_damaging(0.797) TCGA-4B-A93V-01 10 7769056 7769056 T C ITIH2 Silent p.Y376Y 0.52 TCGA-4B-A93V-01 10 79770228 79770228 C A POLR3A Splice_Site p.X548_splice 0.41 TCGA-4B-A93V-01 10 95720096 95720096 A C PIPSL RNA 0.27 TCGA-4B-A93V-01 10 96828976 96828976 C A CYP2C8 Intron 0.36 TCGA-4B-A93V-01 11 118343898 118343898 C T KMT2A Missense_Mutation p.S675L 0.47 benign(0.049) TCGA-4B-A93V-01 11 118344198 118344198 C T KMT2A Missense_Mutation p.S775F 0.42 probably_damaging(0.982) TCGA-4B-A93V-01 11 1651849 1651850 - T KRTAP5-5 3'UTR 0.38 TCGA-4B-A93V-01 11 17552840 17552840 C A USH1C Splice_Site p.X83_splice 0.52 TCGA-4B-A93V-01 11 18195645 18195645 G A MRGPRX4 Missense_Mutation p.R281H 0.66 tolerated(0.06) benign(0.014) TCGA-4B-A93V-01 11 51411811 51411811 A T OR4A5 Silent p.T195T 0.37 TCGA-4B-A93V-01 11 5443441 5443441 T G OR51Q1 Missense_Mutation p.V4G 0.56 tolerated(0.12) benign(0.003) TCGA-4B-A93V-01 11 60229906 60229906 C T MS4A1 Missense_Mutation p.P20L 0.25 deleterious(0.02) benign(0.059) TCGA-4B-A93V-01 11 60971684 60971684 C G PGA3 Missense_Mutation p.F54L 0.26 tolerated(0.56) benign(0.001) TCGA-4B-A93V-01 11 64537511 64537511 C A SF1 Missense_Mutation p.R260L 0.42 deleterious(0.01) probably_damaging(0.98) TCGA-4B-A93V-01 11 64679707 64679707 C G ATG2A Missense_Mutation p.A313P 0.37 tolerated(0.08) benign(0.102) TCGA-4B-A93V-01 11 6977610 6977610 G A ZNF215 Missense_Mutation p.G468R 0.60 deleterious(0) probably_damaging(0.999) TCGA-4B-A93V-01 11 75507520 75507520 G T DGAT2 Missense_Mutation p.A193S 0.48 deleterious(0) possibly_damaging(0.688) TCGA-4B-A93V-01 11 9530225 9530225 A T ZNF143 Missense_Mutation p.S403C 0.54 deleterious(0) probably_damaging(0.999) TCGA-4B-A93V-01 12 104031924 104031924 C A STAB2 Silent p.P280P 0.59 TCGA-4B-A93V-01 12 122839712 122839712 C A CLIP1 Missense_Mutation p.V385L 0.58 deleterious(0.05) probably_damaging(0.97) TCGA-4B-A93V-01 12 123213986 123213986 G A HCAR1 Nonsense_Mutation p.Q301* 0.67 TCGA-4B-A93V-01 12 132522537 132522537 G A EP400 Missense_Mutation p.D2035N 0.66 unknown(0) TCGA-4B-A93V-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.57 deleterious(0.04) probably_damaging(0.993) TCGA-4B-A93V-01 12 5708671 5708671 T A ANO2 Missense_Mutation p.T738S 0.62 tolerated(0.22) possibly_damaging(0.775) TCGA-4B-A93V-01 12 7528361 7528361 C A CD163L1 Missense_Mutation p.C874F 0.51 deleterious(0.03) probably_damaging(1) TCGA-4B-A93V-01 12 7967101 7967101 G A SLC2A14 Silent p.I458I 0.65 TCGA-4B-A93V-01 12 8074198 8074198 G A SLC2A3 Silent p.I434I 0.21 TCGA-4B-A93V-01 13 23909421 23909421 T C SACS Missense_Mutation p.H2865R 0.51 probably_damaging(0.989) TCGA-4B-A93V-01 13 33692352 33692352 G A STARD13 Missense_Mutation p.R711C 0.19 deleterious(0) probably_damaging(0.996) TCGA-4B-A93V-01 13 47011885 47011885 C T PPP1R2P4 RNA 0.57 TCGA-4B-A93V-01 14 100376621 100376621 G A EML1 Missense_Mutation p.E447K 0.18 tolerated(0.21) possibly_damaging(0.769) TCGA-4B-A93V-01 14 107199193 107199193 C T IGHV3-72 Silent p.Q32Q 0.63 TCGA-4B-A93V-01 14 23354113 23354113 G T REM2 Missense_Mutation p.D112Y 0.18 deleterious(0) possibly_damaging(0.541) TCGA-4B-A93V-01 14 23378727 23378727 C A RBM23 Missense_Mutation p.E48D 0.21 tolerated_low_confidence(0.6) benign(0) TCGA-4B-A93V-01 14 52794229 52794229 G T PTGER2 3'UTR 0.73 TCGA-4B-A93V-01 15 27222246 27222246 C A GABRG3 Missense_Mutation p.L51I 0.39 deleterious(0) probably_damaging(0.992) TCGA-4B-A93V-01 15 28386631 28386631 C A HERC2 Missense_Mutation p.V3988L 0.49 benign(0.029) TCGA-4B-A93V-01 15 28441618 28441618 A G HERC2 Silent p.H2703H 0.46 TCGA-4B-A93V-01 15 33842466 33842466 C A RYR3 Missense_Mutation p.D307E 0.28 benign(0.076) TCGA-4B-A93V-01 15 42166552 42166552 C A SPTBN5 Missense_Mutation p.G1543C 0.31 possibly_damaging(0.478) TCGA-4B-A93V-01 15 48053621 48053621 A T SEMA6D Missense_Mutation p.Y147F 0.29 deleterious(0.04) benign(0.047) TCGA-4B-A93V-01 15 50866676 50866676 C A TRPM7 Missense_Mutation p.R1701S 0.19 tolerated(0.1) probably_damaging(0.948) TCGA-4B-A93V-01 15 82574718 82574718 A T FAM154B Missense_Mutation p.Y171F 0.25 deleterious(0.01) probably_damaging(0.99) TCGA-4B-A93V-01 15 88690589 88690589 G T NTRK3 Missense_Mutation p.F147L 0.42 tolerated(0.05) possibly_damaging(0.46) TCGA-4B-A93V-01 15 99500678 99500678 G T IGF1R 3'UTR 0.21 TCGA-4B-A93V-01 16 109248 109248 C A RHBDF1 Missense_Mutation p.G665W 0.31 deleterious(0) probably_damaging(0.999) TCGA-4B-A93V-01 16 18799456 18799456 C G RPS15A Missense_Mutation p.G48R 0.21 deleterious(0) possibly_damaging(0.552) TCGA-4B-A93V-01 16 1961803 1961803 C T HS3ST6 Missense_Mutation p.V242I 0.10 tolerated(1) benign(0.156) TCGA-4B-A93V-01 16 50667421 50667421 C T NKD1 Missense_Mutation p.S381F 0.33 deleterious(0.02) benign(0.006) TCGA-4B-A93V-01 16 71768569 71768569 G A AP1G1 Silent p.V773V 0.39 TCGA-4B-A93V-01 16 75513447 75513447 C A CHST6 Missense_Mutation p.D94Y 0.23 deleterious(0) probably_damaging(1) TCGA-4B-A93V-01 16 8735042 8735042 G T METTL22 Splice_Site p.X276_splice 0.42 TCGA-4B-A93V-01 16 9858806 9858806 C A GRIN2A Splice_Site p.X866_splice 0.21 TCGA-4B-A93V-01 17 18077139 18077139 G A MYO15A Silent p.R3465R 0.56 TCGA-4B-A93V-01 17 41243034 41243034 C A BRCA1 Missense_Mutation p.G1371V 0.41 deleterious(0) possibly_damaging(0.806) TCGA-4B-A93V-01 17 4843186 4843186 G A SLC25A11 Missense_Mutation p.A7V 0.43 tolerated_low_confidence(0.2) benign(0.024) TCGA-4B-A93V-01 17 56499724 56499724 C A HSF5 Missense_Mutation p.E596D 0.43 deleterious_low_confidence(0.02) benign(0.229) TCGA-4B-A93V-01 17 7578208 7578208 T C TP53 Missense_Mutation p.H214R 0.62 deleterious(0.02) probably_damaging(0.922) TCGA-4B-A93V-01 18 14105562 14105562 C A ZNF519 Missense_Mutation p.G326V 0.26 deleterious(0) probably_damaging(0.935) TCGA-4B-A93V-01 18 22807496 22807496 C A ZNF521 Missense_Mutation p.R129L 0.14 deleterious(0) probably_damaging(0.999) TCGA-4B-A93V-01 18 63430003 63430003 C G CDH7 5'UTR 0.44 TCGA-4B-A93V-01 19 10610113 10610113 C A KEAP1 Missense_Mutation p.L199F 0.46 deleterious(0) probably_damaging(1) TCGA-4B-A93V-01 19 1220416 1220416 A C STK11 Missense_Mutation p.Q170P 0.90 deleterious(0.03) probably_damaging(0.994) TCGA-4B-A93V-01 19 12976198 12976198 C A MAST1 Missense_Mutation p.D569E 0.31 deleterious(0) probably_damaging(0.999) TCGA-4B-A93V-01 19 22363126 22363126 T C ZNF676 Missense_Mutation p.T465A 0.57 tolerated(0.08) benign(0.012) TCGA-4B-A93V-01 19 36034660 36034660 C A GAPDHS Silent p.A329A 0.56 TCGA-4B-A93V-01 19 41268853 41268853 G T SNRPA Silent p.P158P 0.78 TCGA-4B-A93V-01 19 47933690 47933690 C A SLC8A2 Missense_Mutation p.D808Y 0.50 deleterious(0) probably_damaging(1) TCGA-4B-A93V-01 19 47933691 47933691 C T SLC8A2 Silent p.Q807Q 0.47 TCGA-4B-A93V-01 19 49558669 49558669 T A CGB7 5'UTR 0.08 TCGA-4B-A93V-01 19 51453239 51453239 A C KLK5 Missense_Mutation p.N69K 0.67 tolerated(0.31) possibly_damaging(0.575) TCGA-4B-A93V-01 19 815842 815842 C T LPPR3 Missense_Mutation p.V29M 0.70 deleterious(0.01) probably_damaging(0.986) TCGA-4B-A93V-01 1 103354457 103354457 C A COL11A1 Missense_Mutation p.G1495C 0.33 unknown(0) TCGA-4B-A93V-01 1 103355014 103355014 A G COL11A1 Silent p.D1487D 0.26 TCGA-4B-A93V-01 1 112525178 112525178 C A KCND3 Silent p.T57T 0.28 TCGA-4B-A93V-01 1 11589659 11589659 G A PTCHD2 Missense_Mutation p.V949I 0.23 tolerated_low_confidence(0.1) benign(0.081) TCGA-4B-A93V-01 1 120050055 120050055 C A HSD3B1 5'UTR 0.39 TCGA-4B-A93V-01 1 120285561 120285561 G T PHGDH Silent p.G447G 0.19 TCGA-4B-A93V-01 1 13743001 13743001 C A PRAMEF20 Missense_Mutation p.L64I 0.32 deleterious(0) probably_damaging(0.998) TCGA-4B-A93V-01 1 151773804 151773804 C G LINGO4 Silent p.G459G 0.37 TCGA-4B-A93V-01 1 152278012 152278012 C A FLG Missense_Mutation p.S3117I 0.32 unknown(0) TCGA-4B-A93V-01 1 152278984 152278984 C A FLG Missense_Mutation p.S2793I 0.25 benign(0.262) TCGA-4B-A93V-01 1 161180556 161180556 C G NDUFS2 Intron 0.43 TCGA-4B-A93V-01 1 171310854 171310854 G T FMO4 Missense_Mutation p.W518L 0.37 tolerated(1) benign(0.006) TCGA-4B-A93V-01 1 17720542 17720542 C A PADI6 RNA 0.22 TCGA-4B-A93V-01 1 192778255 192778255 G A RGS2 Silent p.K18K 0.17 TCGA-4B-A93V-01 1 201924652 201924652 A C TIMM17A 5'UTR 0.17 TCGA-4B-A93V-01 1 208200593 208200593 T C PLXNA2 Missense_Mutation p.S1894G 0.55 deleterious(0) possibly_damaging(0.827) TCGA-4B-A93V-01 1 21546510 21546510 C A ECE1 Nonsense_Mutation p.E751* 0.33 TCGA-4B-A93V-01 1 221058070 221058070 C T HLX 3'UTR 0.22 TCGA-4B-A93V-01 1 236205329 236205329 G T NID1 Missense_Mutation p.T339N 0.29 tolerated(0.25) benign(0.002) TCGA-4B-A93V-01 1 247171299 247171299 G T ZNF695 5'UTR 0.28 TCGA-4B-A93V-01 1 248085107 248085107 A T OR2T8 Missense_Mutation p.H263L 0.20 tolerated(0.06) benign(0.102) TCGA-4B-A93V-01 1 248366830 248366830 C T OR2M3 Missense_Mutation p.T154M 0.34 tolerated(0.06) benign(0.036) TCGA-4B-A93V-01 1 248487376 248487376 G T OR2M7 Silent p.S165S 0.37 TCGA-4B-A93V-01 1 32740367 32740367 G T LCK Silent p.R45R 0.31 TCGA-4B-A93V-01 1 70555487 70555487 C A LRRC7 Missense_Mutation p.F1472L 0.22 deleterious(0.03) benign(0.093) TCGA-4B-A93V-01 1 9811657 9811657 C T CLSTN1 Missense_Mutation p.E175K 0.29 deleterious(0) probably_damaging(0.999) TCGA-4B-A93V-01 20 33894567 33894567 C A UQCC1 Missense_Mutation p.D223Y 0.30 deleterious(0) probably_damaging(1) TCGA-4B-A93V-01 20 43048440 43048440 G T HNF4A Silent p.L272L 0.25 TCGA-4B-A93V-01 20 61942882 61942882 G A COL20A1 Silent p.E510E 0.25 TCGA-4B-A93V-01 21 11098821 11098821 C A BAGE2 RNA 0.19 TCGA-4B-A93V-01 21 40608583 40608583 C T BRWD1 Missense_Mutation p.E902K 0.25 tolerated(0.13) probably_damaging(0.98) TCGA-4B-A93V-01 22 26706671 26706671 C A SEZ6L Missense_Mutation p.A517D 0.62 tolerated(0.11) possibly_damaging(0.58) TCGA-4B-A93V-01 22 32827334 32827334 C A BPIFC Missense_Mutation p.R406I 0.66 deleterious(0.02) benign(0.376) TCGA-4B-A93V-01 2 116548749 116548749 G A DPP10 Missense_Mutation p.D546N 0.31 tolerated(0.43) benign(0.001) TCGA-4B-A93V-01 2 200193611 200193611 C A SATB2 Missense_Mutation p.R399L 0.14 deleterious(0) probably_damaging(0.999) TCGA-4B-A93V-01 2 239976525 239976525 T A HDAC4 Missense_Mutation p.D998V 0.10 deleterious(0) benign(0.01) TCGA-4B-A93V-01 2 65571932 65571932 C T SPRED2 Missense_Mutation p.G42E 0.68 deleterious(0.03) probably_damaging(0.998) TCGA-4B-A93V-01 2 98341630 98341630 C T ZAP70 Missense_Mutation p.R160W 0.24 deleterious(0.02) probably_damaging(0.938) TCGA-4B-A93V-01 3 110852871 110852871 T A PVRL3 Missense_Mutation p.L487I 0.32 tolerated(0.48) benign(0.431) TCGA-4B-A93V-01 3 151538178 151538178 T G AADAC Missense_Mutation p.S123R 0.21 tolerated(0.72) benign(0.003) TCGA-4B-A93V-01 3 73432831 73432831 G C PDZRN3 Missense_Mutation p.D962E 0.63 tolerated(0.06) possibly_damaging(0.62) TCGA-4B-A93V-01 4 101344559 101344559 T C EMCN Missense_Mutation p.S140G 0.20 deleterious(0.03) benign(0.005) TCGA-4B-A93V-01 4 109681058 109681058 T A ETNPPL Missense_Mutation p.H61L 0.21 deleterious(0) probably_damaging(0.958) TCGA-4B-A93V-01 4 114278719 114278719 T C ANK2 Missense_Mutation p.L2982S 0.31 benign(0.006) TCGA-4B-A93V-01 4 123301250 123301250 A C ADAD1 Missense_Mutation p.Q9P 0.26 tolerated(0.11) benign(0.027) TCGA-4B-A93V-01 4 15720572 15720572 G T BST1 Missense_Mutation p.R249S 0.28 tolerated(0.08) probably_damaging(0.993) TCGA-4B-A93V-01 4 187201418 187201418 G T F11 Nonsense_Mutation p.G303* 0.43 TCGA-4B-A93V-01 4 25160610 25160610 T A SEPSECS Missense_Mutation p.R78S 0.31 deleterious(0) probably_damaging(0.96) TCGA-4B-A93V-01 5 140174519 140174519 T A PCDHA2 5'Flank 0.36 TCGA-4B-A93V-01 5 140516633 140516633 G T PCDHB5 Silent p.A539A 0.28 TCGA-4B-A93V-01 5 140516634 140516634 C T PCDHB5 Silent p.L540L 0.26 TCGA-4B-A93V-01 5 140581767 140581767 T C PCDHB11 3'UTR 0.67 TCGA-4B-A93V-01 5 143853512 143853512 G A KCTD16 Silent p.R374R 0.66 TCGA-4B-A93V-01 5 175110355 175110355 G C HRH2 Missense_Mutation p.C40S 0.59 deleterious(0) probably_damaging(1) TCGA-4B-A93V-01 5 180277728 180277728 C A ZFP62 Missense_Mutation p.G256V 0.64 tolerated(0.11) probably_damaging(1) TCGA-4B-A93V-01 5 180277729 180277729 C A ZFP62 Missense_Mutation p.G256C 0.64 tolerated(0.05) probably_damaging(1) TCGA-4B-A93V-01 5 180338529 180338529 C T BTNL8 Silent p.T196T 0.58 TCGA-4B-A93V-01 5 180474940 180474940 A - BTNL9 Frame_Shift_Del p.G42Afs*109 0.35 TCGA-4B-A93V-01 6 123038953 123038953 C A PKIB Nonsense_Mutation p.S12* 0.21 TCGA-4B-A93V-01 6 132031227 132031227 G T CTAGE9 Missense_Mutation p.P311T 0.22 tolerated(0.06) possibly_damaging(0.743) TCGA-4B-A93V-01 6 144757091 144757091 G C UTRN Missense_Mutation p.E292D 0.20 tolerated(0.27) benign(0.007) TCGA-4B-A93V-01 6 144757092 144757092 C A UTRN Missense_Mutation p.H293N 0.21 tolerated(0.32) benign(0.017) TCGA-4B-A93V-01 6 169648830 169648830 C G THBS2 Missense_Mutation p.R97S 0.40 deleterious(0) possibly_damaging(0.611) TCGA-4B-A93V-01 6 2893738 2893738 C T SERPINB9 Silent p.R158R 0.56 TCGA-4B-A93V-01 6 2893739 2893739 C A SERPINB9 Missense_Mutation p.R158M 0.57 deleterious(0) probably_damaging(0.987) TCGA-4B-A93V-01 6 66204654 66204654 C A EYS Missense_Mutation p.C217F 0.21 deleterious(0) benign(0.141) TCGA-4B-A93V-01 7 107748256 107748256 C A LAMB4 Silent p.R137R 0.13 TCGA-4B-A93V-01 7 127253134 127253134 G A PAX4 Silent p.S211S 0.32 TCGA-4B-A93V-01 7 142832354 142832354 G T PIP Missense_Mutation p.V55L 0.26 tolerated(0.09) benign(0.002) TCGA-4B-A93V-01 7 143747702 143747702 A G OR2A5 Missense_Mutation p.I70V 0.48 tolerated(0.09) benign(0.003) TCGA-4B-A93V-01 7 149559346 149559346 C - ZNF862 Frame_Shift_Del p.I1034Sfs*13 0.14 TCGA-4B-A93V-01 7 158109570 158109570 T A PTPRN2 Missense_Mutation p.E73V 0.32 deleterious(0) probably_damaging(0.973) TCGA-4B-A93V-01 7 38356736 38356736 C A TRGV9 Missense_Mutation p.G83V 0.51 deleterious(0.01) possibly_damaging(0.905) TCGA-4B-A93V-01 7 64439051 64439051 T A ZNF117 Missense_Mutation p.S300C 0.34 deleterious(0) possibly_damaging(0.863) TCGA-4B-A93V-01 8 134108614 134108614 G T TG Silent p.V2523V 0.10 TCGA-4B-A93V-01 8 142505035 142505035 G C MROH5 Missense_Mutation p.I102M 0.29 tolerated(0.11) possibly_damaging(0.449) TCGA-4B-A93V-01 8 14412381 14412381 C A SGCZ Nonsense_Mutation p.E32* 0.21 TCGA-4B-A93V-01 8 24811207 24811207 G A CTD-2168K21.2 5'Flank 0.43 TCGA-4B-A93V-01 8 36698093 36698093 G A KCNU1 Missense_Mutation p.R544Q 0.19 tolerated(0.06) possibly_damaging(0.56) TCGA-4B-A93V-01 8 39695665 39695665 G T ADAM2 Missense_Mutation p.L14M 0.36 deleterious(0.03) benign(0.354) TCGA-4B-A93V-01 8 51705268 51705268 G C SNTG1 Missense_Mutation p.C478S 0.43 deleterious(0.05) probably_damaging(0.999) TCGA-4B-A93V-01 8 54141954 54141954 T C OPRK1 Missense_Mutation p.K349R 0.33 tolerated(0.76) benign(0.005) TCGA-4B-A93V-01 8 86389423 86389423 A G CA2 Silent p.P194P 0.44 TCGA-4B-A93V-01 8 99101664 99101664 C A C8orf47 Missense_Mutation p.A140D 0.17 deleterious(0) benign(0.345) TCGA-4B-A93V-01 8 99161079 99161079 G C POP1 Missense_Mutation p.G583R 0.48 deleterious(0) probably_damaging(1) TCGA-4B-A93V-01 9 116045430 116045430 C T PRPF4 Missense_Mutation p.H168Y 0.39 deleterious(0) probably_damaging(0.987) TCGA-4B-A93V-01 9 131038938 131038938 C A SWI5 Missense_Mutation p.H110Q 0.36 tolerated(0.56) benign(0) TCGA-4B-A93V-01 9 137687129 137687129 C A COL5A1 Missense_Mutation p.P923T 0.11 unknown(0) TCGA-4B-A93V-01 9 77354908 77354908 C G TRPM6 Missense_Mutation p.V1740L 0.17 deleterious(0.04) benign(0.014) TCGA-4B-A93V-01 9 84603821 84603821 A G SPATA31D1 Missense_Mutation p.I30V 0.42 tolerated(0.55) benign(0.003) TCGA-4B-A93V-01 X 104464942 104464942 T C TEX13A Missense_Mutation p.E47G 0.53 deleterious(0) probably_damaging(0.987) TCGA-4B-A93V-01 X 11200212 11200212 C A ARHGAP6 Missense_Mutation p.V434F 0.54 deleterious(0.01) probably_damaging(0.998) TCGA-4B-A93V-01 X 114869313 114869313 A G PLS3 Missense_Mutation p.I235V 0.58 deleterious(0) probably_damaging(0.997) TCGA-4B-A93V-01 X 135308089 135308089 T C MAP7D3 Silent p.Q706Q 0.67 TCGA-4B-A93V-01 X 52825261 52825261 T C SPANXN5 3'UTR 0.16 TCGA-4B-A93V-01 X 79283525 79283525 G T TBX22 Missense_Mutation p.W300L 0.11 deleterious(0) probably_damaging(0.999) TCGA-50-5044-01 10 103988655 103988655 C G ELOVL3 Silent p.L153L 0.13 TCGA-50-5044-01 10 114136114 114136114 G T ACSL5 Missense_Mutation p.G16V 0.11 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-50-5044-01 10 114136115 114136115 G T ACSL5 Silent p.G16G 0.11 TCGA-50-5044-01 10 115609962 115609962 G C DCLRE1A Missense_Mutation p.S301C 0.11 deleterious(0) probably_damaging(1) TCGA-50-5044-01 10 134647588 134647588 C T TTC40 Silent p.S2302S 0.10 TCGA-50-5044-01 10 45956749 45956749 G A MARCH8 Missense_Mutation p.S118F 0.15 deleterious(0) probably_damaging(0.997) TCGA-50-5044-01 11 134240907 134240907 C G GLB1L2 Missense_Mutation p.I407M 0.14 deleterious(0.01) benign(0.364) TCGA-50-5044-01 11 26584813 26584813 C G MUC15 Splice_Site p.X259_splice 0.13 TCGA-50-5044-01 11 32124824 32124824 T A RCN1 Intron 0.14 TCGA-50-5044-01 11 33374837 33374837 C T HIPK3 Missense_Mutation p.S1124L 0.07 deleterious(0.01) benign(0.169) TCGA-50-5044-01 11 36669602 36669620 TAAGCACCAGCATTCCTTC - C11orf74 Frame_Shift_Del p.V132Afs*14 0.09 TCGA-50-5044-01 11 74546756 74546756 G C RNF169 Missense_Mutation p.E370Q 0.08 deleterious(0) probably_damaging(0.997) TCGA-50-5044-01 12 100617685 100617685 G C ACTR6 Missense_Mutation p.D395H 0.07 deleterious(0) probably_damaging(0.999) TCGA-50-5044-01 12 101761655 101761655 G A UTP20 Silent p.L2095L 0.08 TCGA-50-5044-01 12 10954612 10954612 G A TAS2R7 Silent p.L186L 0.14 TCGA-50-5044-01 12 123687489 123687489 G A MPHOSPH9 Missense_Mutation p.S336F 0.09 tolerated(0.11) probably_damaging(0.998) TCGA-50-5044-01 12 247995 247995 C T IQSEC3 Missense_Mutation p.T489M 0.12 deleterious(0) probably_damaging(0.999) TCGA-50-5044-01 12 54422532 54422532 C G HOXC6 Missense_Mutation p.S76C 0.14 tolerated(0.62) benign(0.264) TCGA-50-5044-01 12 56826270 56826270 G A TIMELESS Silent p.L190L 0.11 TCGA-50-5044-01 12 88568455 88568455 G A TMTC3 Missense_Mutation p.R424K 0.10 deleterious(0) possibly_damaging(0.888) TCGA-50-5044-01 12 99056294 99056294 G A APAF1 Silent p.Q257Q 0.15 TCGA-50-5044-01 13 100153956 100153956 G A TM9SF2 Silent p.R32R 0.10 TCGA-50-5044-01 13 101997671 101997671 C G NALCN Missense_Mutation p.E249Q 0.09 tolerated(0.37) benign(0.01) TCGA-50-5044-01 13 108518943 108518943 A G FAM155A Translation_Start_Site p.M1? 0.10 deleterious(0) probably_damaging(0.946) TCGA-50-5044-01 13 21549028 21549028 C T LATS2 Missense_Mutation p.C1083Y 0.21 tolerated_low_confidence(0.09) probably_damaging(0.997) TCGA-50-5044-01 13 30075296 30075296 C G MTUS2 Silent p.L1297L 0.15 TCGA-50-5044-01 14 23242848 23242848 G C SLC7A7 Missense_Mutation p.P503A 0.10 tolerated(0.29) benign(0.001) TCGA-50-5044-01 14 23868018 23868018 C G MYH6 Missense_Mutation p.E604Q 0.08 deleterious(0.01) possibly_damaging(0.879) TCGA-50-5044-01 14 24619469 24619469 G C RNF31 Missense_Mutation p.E337Q 0.07 tolerated(0.18) benign(0.312) TCGA-50-5044-01 14 31576369 31576369 C T HECTD1 Missense_Mutation p.E2237K 0.10 tolerated(0.72) possibly_damaging(0.697) TCGA-50-5044-01 14 33242896 33242896 G T AKAP6 Nonsense_Mutation p.E1129* 0.13 TCGA-50-5044-01 14 64630120 64630120 G C SYNE2 Missense_Mutation p.E5434Q 0.13 probably_damaging(0.963) TCGA-50-5044-01 14 69520961 69520961 C T DCAF5 Silent p.R814R 0.10 TCGA-50-5044-01 15 102211689 102211689 C T TARSL2 Missense_Mutation p.S656N 0.13 tolerated(0.16) benign(0.008) TCGA-50-5044-01 15 22840267 22840267 G C TUBGCP5 Silent p.L111L 0.11 TCGA-50-5044-01 15 64792238 64792238 G A ZNF609 Missense_Mutation p.G207E 0.09 deleterious(0.01) benign(0.155) TCGA-50-5044-01 15 81589336 81589336 C T IL16 Missense_Mutation p.S657F 0.21 tolerated(0.77) benign(0.052) TCGA-50-5044-01 15 89836071 89836071 G C FANCI Missense_Mutation p.K715N 0.08 deleterious(0.01) possibly_damaging(0.661) TCGA-50-5044-01 15 91310173 91310173 G A BLM Missense_Mutation p.D743N 0.11 deleterious(0) probably_damaging(0.985) TCGA-50-5044-01 16 20348643 20348643 G C UMOD Silent p.L570L 0.15 TCGA-50-5044-01 16 2296868 2296868 G A ECI1 Silent p.L96L 0.15 TCGA-50-5044-01 16 2331082 2331082 G C ABCA3 Silent p.L1435L 0.05 TCGA-50-5044-01 16 24902236 24902236 C G SLC5A11 Missense_Mutation p.F237L 0.13 tolerated(0.21) benign(0.031) TCGA-50-5044-01 16 31374654 31374654 C T ITGAX Missense_Mutation p.H557Y 0.07 deleterious(0.02) probably_damaging(0.988) TCGA-50-5044-01 16 4312331 4312331 G A TFAP4 Silent p.F116F 0.13 TCGA-50-5044-01 16 4312570 4312570 G T TFAP4 Silent p.L74L 0.10 TCGA-50-5044-01 16 4715113 4715113 G T MGRN1 Silent p.V213V 0.10 TCGA-50-5044-01 16 5056047 5056047 G T SEC14L5 Missense_Mutation p.V479L 0.11 tolerated(0.93) benign(0.001) TCGA-50-5044-01 16 67691946 67691946 C T ACD Silent p.R469R 0.09 TCGA-50-5044-01 16 81078195 81078195 G A ATMIN Missense_Mutation p.E698K 0.10 deleterious(0) probably_damaging(0.999) TCGA-50-5044-01 17 1640965 1640965 C T WDR81 Missense_Mutation p.R1938C 0.13 deleterious(0) probably_damaging(1) TCGA-50-5044-01 17 27016441 27016441 G A SUPT6H Silent p.K1068K 0.08 TCGA-50-5044-01 17 36895840 36895840 T A PCGF2 Missense_Mutation p.R70W 0.08 deleterious(0) probably_damaging(0.95) TCGA-50-5044-01 17 36895846 36895846 T C PCGF2 Missense_Mutation p.S68G 0.07 deleterious(0.01) benign(0.017) TCGA-50-5044-01 17 38953259 38953259 G C KRT28 Nonsense_Mutation p.S296* 0.12 TCGA-50-5044-01 17 39658760 39658760 G A KRT13 Silent p.I370I 0.11 TCGA-50-5044-01 17 39967121 39967121 T A LEPREL4 Missense_Mutation p.I261L 0.15 tolerated(0.29) benign(0.037) TCGA-50-5044-01 17 56774132 56774132 G - RAD51C Frame_Shift_Del p.G162Efs*9 0.14 TCGA-50-5044-01 17 66250612 66250612 G A AMZ2 Silent p.V218V 0.14 TCGA-50-5044-01 17 73089889 73089889 C G SLC16A5 Missense_Mutation p.S53C 0.06 deleterious(0) probably_damaging(1) TCGA-50-5044-01 17 73089908 73089908 C T SLC16A5 Silent p.L59L 0.06 TCGA-50-5044-01 17 7942594 7942594 C T ALOX15B Missense_Mutation p.L41F 0.21 tolerated(0.68) benign(0.012) TCGA-50-5044-01 18 56897691 56897691 C G GRP Missense_Mutation p.N146K 0.09 tolerated_low_confidence(0.1) benign(0.254) TCGA-50-5044-01 18 64172164 64172164 G A CDH19 Missense_Mutation p.S735F 0.13 deleterious(0) probably_damaging(0.999) TCGA-50-5044-01 18 8806923 8806923 C G SOGA2 Missense_Mutation p.F823L 0.15 tolerated(1) benign(0) TCGA-50-5044-01 19 12911999 12911999 T A PRDX2 Missense_Mutation p.K26I 0.23 deleterious(0.02) benign(0.007) TCGA-50-5044-01 19 14143202 14143202 C A IL27RA Missense_Mutation p.S35R 0.07 deleterious(0.01) possibly_damaging(0.791) TCGA-50-5044-01 19 20002899 20002899 G C ZNF253 Missense_Mutation p.E281D 0.08 deleterious(0.04) benign(0.026) TCGA-50-5044-01 19 51378047 51378047 G T KLK2 Missense_Mutation p.Q39H 0.23 tolerated(0.06) benign(0.38) TCGA-50-5044-01 19 55889060 55889060 G C TMEM190 Missense_Mutation p.G65A 0.10 tolerated(0.06) possibly_damaging(0.899) TCGA-50-5044-01 19 5696170 5696170 G C LONP1 Missense_Mutation p.I636M 0.05 deleterious(0.03) possibly_damaging(0.868) TCGA-50-5044-01 19 7593840 7593840 T C MCOLN1 Missense_Mutation p.I373T 0.10 deleterious(0.03) benign(0.299) TCGA-50-5044-01 19 9074892 9074892 G A MUC16 Missense_Mutation p.S4185F 0.09 unknown(0) TCGA-50-5044-01 1 12378268 12378268 C T VPS13D Missense_Mutation p.R2430C 0.19 benign(0) TCGA-50-5044-01 1 149858806 149858806 G A HIST2H2AC Silent p.L94L 0.14 TCGA-50-5044-01 1 149915752 149915752 C T OTUD7B 3'UTR 0.07 TCGA-50-5044-01 1 150482562 150482562 C T ECM1 Intron 0.09 TCGA-50-5044-01 1 167097145 167097145 G A DUSP27 Missense_Mutation p.R926K 0.07 tolerated(0.53) benign(0.021) TCGA-50-5044-01 1 167944145 167944145 G C DCAF6 Missense_Mutation p.Q110H 0.16 deleterious(0.01) probably_damaging(0.994) TCGA-50-5044-01 1 169487715 169487715 C G F5 Missense_Mutation p.D2094H 0.11 tolerated(0.08) benign(0.034) TCGA-50-5044-01 1 174983875 174983875 A G MRPS14 Missense_Mutation p.L106P 0.05 deleterious(0) probably_damaging(0.996) TCGA-50-5044-01 1 180062921 180062921 C G CEP350 Missense_Mutation p.Q2561E 0.14 benign(0.092) TCGA-50-5044-01 1 19499493 19499493 G C UBR4 Nonsense_Mutation p.S1129* 0.07 TCGA-50-5044-01 1 207222742 207222742 C T YOD1 Missense_Mutation p.E224K 0.20 deleterious(0) probably_damaging(1) TCGA-50-5044-01 1 214816089 214816089 G C CENPF Missense_Mutation p.E1470Q 0.30 possibly_damaging(0.836) TCGA-50-5044-01 1 226109325 226109325 G A RP4-559A3.7 Missense_Mutation p.A113V 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.667) TCGA-50-5044-01 1 247655099 247655099 C T OR2W5 RNA 0.19 TCGA-50-5044-01 1 33402454 33402454 C T RNF19B Missense_Mutation p.E718K 0.13 deleterious_low_confidence(0.04) possibly_damaging(0.905) TCGA-50-5044-01 1 38227381 38227381 C T EPHA10 Silent p.P182P 0.12 TCGA-50-5044-01 1 43893380 43893380 C T SZT2 Nonsense_Mutation p.Q1203* 0.24 TCGA-50-5044-01 1 62175070 62175070 G C TM2D1 Missense_Mutation p.S155C 0.07 tolerated(0.2) possibly_damaging(0.773) TCGA-50-5044-01 1 935105 935105 G C HES4 Silent p.L83L 0.11 TCGA-50-5044-01 1 93722039 93722039 G A CCDC18 Missense_Mutation p.E1217K 0.08 tolerated(0.11) possibly_damaging(0.782) TCGA-50-5044-01 1 97278831 97278831 G C PTBP2 Splice_Site p.X489_splice 0.10 TCGA-50-5044-01 20 19970783 19970783 G T RIN2 Silent p.R681R 0.31 TCGA-50-5044-01 20 31609588 31609588 G C BPIFB2 Missense_Mutation p.E440Q 0.10 tolerated(0.49) possibly_damaging(0.578) TCGA-50-5044-01 20 33068500 33068500 A G ITCH Missense_Mutation p.I680V 0.12 tolerated(0.36) benign(0.001) TCGA-50-5044-01 20 33519152 33519152 C G GSS Missense_Mutation p.Q366H 0.09 deleterious(0) probably_damaging(0.999) TCGA-50-5044-01 20 47841720 47841720 C T DDX27 Missense_Mutation p.S226F 0.12 deleterious(0) probably_damaging(0.993) TCGA-50-5044-01 20 49510947 49510947 C G ADNP Missense_Mutation p.E102Q 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-50-5044-01 20 62324308 62324308 C T RTEL1 Missense_Mutation p.L959F 0.09 tolerated(0.05) benign(0.192) TCGA-50-5044-01 21 44445025 44445025 G A PKNOX1 Silent p.Q298Q 0.16 TCGA-50-5044-01 22 17072712 17072712 G T CCT8L2 Silent p.L243L 0.13 TCGA-50-5044-01 22 37966318 37966318 C T LGALS2 Silent p.L117L 0.12 TCGA-50-5044-01 2 108487524 108487524 G C RGPD4 Missense_Mutation p.E1022Q 0.09 tolerated(0.11) possibly_damaging(0.877) TCGA-50-5044-01 2 128409339 128409339 G A GPR17 3'UTR 0.13 TCGA-50-5044-01 2 15758387 15758387 G C DDX1 Missense_Mutation p.R400T 0.08 deleterious(0) probably_damaging(1) TCGA-50-5044-01 2 202005029 202005029 T G CFLAR Intron 0.11 TCGA-50-5044-01 2 219677453 219677453 G T CYP27A1 Missense_Mutation p.W275C 0.13 deleterious(0) probably_damaging(1) TCGA-50-5044-01 2 40655752 40655752 C G SLC8A1 Missense_Mutation p.E557Q 0.08 tolerated(0.17) benign(0.13) TCGA-50-5044-01 2 55463886 55463886 G A MTIF2 Silent p.L694L 0.08 TCGA-50-5044-01 2 66795918 66795918 A G MEIS1 Intron 0.06 TCGA-50-5044-01 2 88402637 88402637 G A SMYD1 Missense_Mutation p.D317N 0.08 tolerated(0.17) benign(0) TCGA-50-5044-01 2 89265841 89265841 G T IGKV1-6 Silent p.I97I 0.12 TCGA-50-5044-01 3 123005609 123005609 G A ADCY5 Missense_Mutation p.P1194S 0.12 deleterious(0) probably_damaging(0.997) TCGA-50-5044-01 3 127339966 127339966 C G MCM2 Silent p.L833L 0.08 TCGA-50-5044-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.12 deleterious(0.04) probably_damaging(0.96) TCGA-50-5044-01 3 38180462 38180462 G C MYD88 Missense_Mutation p.E104Q 0.08 tolerated(0.21) possibly_damaging(0.704) TCGA-50-5044-01 3 56667420 56667420 G C FAM208A Silent p.L1133L 0.08 TCGA-50-5044-01 4 119631267 119631267 G C METTL14 Missense_Mutation p.R394T 0.10 tolerated(0.5) probably_damaging(0.966) TCGA-50-5044-01 4 15539654 15539654 G C CC2D2A Missense_Mutation p.E633Q 0.20 tolerated(1) benign(0.004) TCGA-50-5044-01 4 155491675 155491675 G A FGB Missense_Mutation p.G450E 0.07 deleterious(0) probably_damaging(1) TCGA-50-5044-01 4 16019964 16019964 G A PROM1 Silent p.S328S 0.18 TCGA-50-5044-01 4 185320141 185320141 C T IRF2 Missense_Mutation p.E208K 0.09 deleterious(0.01) probably_damaging(0.985) TCGA-50-5044-01 4 27004688 27004688 T C STIM2 Silent p.L315L 0.10 TCGA-50-5044-01 4 68499189 68499189 C G UBA6 Missense_Mutation p.K672N 0.11 tolerated(0.07) benign(0.018) TCGA-50-5044-01 4 79373458 79373458 G C FRAS1 Missense_Mutation p.R2238T 0.17 benign(0.003) TCGA-50-5044-01 4 8082509 8082509 C T ABLIM2 Missense_Mutation p.E159K 0.16 deleterious(0) probably_damaging(0.999) TCGA-50-5044-01 5 143853393 143853393 C T KCTD16 Missense_Mutation p.R335C 0.22 tolerated(0.17) probably_damaging(0.996) TCGA-50-5044-01 5 147819233 147819233 G A FBXO38 Silent p.Q941Q 0.08 TCGA-50-5044-01 5 148624548 148624548 G A ABLIM3 Missense_Mutation p.E486K 0.06 tolerated(0.08) benign(0.194) TCGA-50-5044-01 5 149782841 149782841 G A CD74 Silent p.I220I 0.08 TCGA-50-5044-01 5 151183593 151183593 G A G3BP1 Missense_Mutation p.G448R 0.09 deleterious(0) probably_damaging(0.998) TCGA-50-5044-01 5 159640748 159640748 G A FABP6 Silent p.L19L 0.11 TCGA-50-5044-01 5 162943529 162943529 G C MAT2B Missense_Mutation p.A178P 0.21 tolerated(0.1) probably_damaging(0.919) TCGA-50-5044-01 5 37169148 37169148 C G C5orf42 Missense_Mutation p.L2326F 0.12 tolerated(0.25) benign(0.022) TCGA-50-5044-01 5 41019038 41019038 G C MROH2B Missense_Mutation p.L842V 0.10 tolerated(0.09) benign(0.008) TCGA-50-5044-01 5 54603853 54603853 A G SKIV2L2 Silent p.A4A 0.08 TCGA-50-5044-01 5 78417047 78417047 G C BHMT Missense_Mutation p.E162Q 0.08 tolerated(0.18) benign(0.143) TCGA-50-5044-01 5 90020705 90020705 G C GPR98 Missense_Mutation p.G3269R 0.08 probably_damaging(0.979) TCGA-50-5044-01 6 13644815 13644815 G A RANBP9 Silent p.I358I 0.09 TCGA-50-5044-01 6 151670162 151670162 T G AKAP12 Silent p.A212A 0.10 TCGA-50-5044-01 6 152560670 152560670 C G SYNE1 Missense_Mutation p.E6689Q 0.12 benign(0.168) TCGA-50-5044-01 6 24134591 24134591 G A NRSN1 Silent p.Q12Q 0.14 TCGA-50-5044-01 6 27368615 27368615 C G ZNF391 Missense_Mutation p.Q156E 0.09 deleterious(0.04) benign(0.027) TCGA-50-5044-01 6 31701437 31701437 C T CLIC1 Silent p.L96L 0.14 TCGA-50-5044-01 6 49456172 49456172 G C CENPQ Missense_Mutation p.E195D 0.05 tolerated(0.11) benign(0.032) TCGA-50-5044-01 7 100420177 100420177 T C EPHB4 Missense_Mutation p.Y175C 0.15 deleterious(0) probably_damaging(1) TCGA-50-5044-01 7 108119701 108119701 C G PNPLA8 Silent p.V667V 0.08 TCGA-50-5044-01 7 140453155 140453155 C G BRAF Missense_Mutation p.D594H 0.09 deleterious(0) probably_damaging(0.971) TCGA-50-5044-01 7 142099525 142099525 C T TRBV7-8 Missense_Mutation p.V93I 0.11 tolerated(0.36) benign(0.005) TCGA-50-5044-01 7 2409165 2409165 G C EIF3B Missense_Mutation p.D488H 0.06 deleterious(0.03) possibly_damaging(0.62) TCGA-50-5044-01 7 27872596 27872596 C T JAZF1 Splice_Site p.X186_splice 0.13 TCGA-50-5044-01 7 31683040 31683040 C T CCDC129 Nonsense_Mutation p.Q712* 0.19 TCGA-50-5044-01 7 50531022 50531022 G A DDC Silent p.I450I 0.11 TCGA-50-5044-01 7 75178196 75178196 C T HIP1 Missense_Mutation p.R800K 0.09 deleterious(0.04) benign(0.231) TCGA-50-5044-01 7 99170993 99170993 C T ZNF655 Missense_Mutation p.S456L 0.12 deleterious(0.01) possibly_damaging(0.504) TCGA-50-5044-01 8 100155244 100155244 A T VPS13B Missense_Mutation p.D565V 0.11 deleterious(0) probably_damaging(0.937) TCGA-50-5044-01 8 124109655 124109655 G C TBC1D31 Missense_Mutation p.D269H 0.11 deleterious(0) possibly_damaging(0.841) TCGA-50-5044-01 8 18662370 18662370 G C PSD3 Missense_Mutation p.S558C 0.08 tolerated(0.11) benign(0.073) TCGA-50-5044-01 8 93017287 93017287 C T RUNX1T1 Intron 0.15 TCGA-50-5044-01 9 104390585 104390585 C G GRIN3A Missense_Mutation p.M817I 0.08 tolerated(0.07) probably_damaging(0.998) TCGA-50-5044-01 9 114090198 114090198 G A OR2K2 Silent p.L172L 0.08 TCGA-50-5044-01 9 131761475 131761475 C A NUP188 Silent p.I1180I 0.16 TCGA-50-5044-01 9 134006218 134006218 C T NUP214 Missense_Mutation p.L220F 0.11 unknown(0) TCGA-50-5044-01 9 35847107 35847107 C G TMEM8B Intron 0.19 TCGA-50-5044-01 9 88557126 88557126 A G NAA35 Missense_Mutation p.M18V 0.04 tolerated_low_confidence(1) benign(0) TCGA-50-5044-01 9 92220654 92220654 C T GADD45G Silent p.I76I 0.14 TCGA-50-5044-01 X 13636018 13636018 C G EGFL6 Missense_Mutation p.F316L 0.07 tolerated(0.3) benign(0.009) TCGA-50-5044-01 X 1464320 1464320 C T IL3RA Missense_Mutation p.S59F 0.06 tolerated(0.22) benign(0.002) TCGA-50-5044-01 X 147743947 147743947 C T AFF2 Silent p.I233I 0.13 TCGA-50-5044-01 X 64141841 64141841 G C ZC4H2 Missense_Mutation p.I27M 0.06 tolerated(0.11) possibly_damaging(0.522) TCGA-50-5044-01 X 68749637 68749637 G T FAM155B Silent p.P419P 0.09 TCGA-50-5045-01 10 102849705 102849705 G T TLX1NB 5'UTR 0.33 TCGA-50-5045-01 10 108427547 108427547 C A SORCS1 Nonsense_Mutation p.E735* 0.28 TCGA-50-5045-01 10 128147664 128147664 G T C10orf90 Missense_Mutation p.S614R 0.12 deleterious(0.01) benign(0.029) TCGA-50-5045-01 10 13652108 13652108 G - PRPF18 Frame_Shift_Del p.G145Vfs*13 0.09 TCGA-50-5045-01 10 14913621 14913621 A G HSPA14 3'UTR 0.19 TCGA-50-5045-01 10 21962366 21962366 C T MLLT10 Missense_Mutation p.S380L 0.09 tolerated(0.61) benign(0.034) TCGA-50-5045-01 10 38145231 38145231 T A ZNF248 Missense_Mutation p.K3I 0.12 deleterious(0.04) benign(0.128) TCGA-50-5045-01 10 50959886 50959886 C G OGDHL Missense_Mutation p.V246L 0.06 tolerated(0.11) benign(0.02) TCGA-50-5045-01 10 63170408 63170408 C T TMEM26 Missense_Mutation p.S260N 0.16 deleterious(0) probably_damaging(0.993) TCGA-50-5045-01 10 63850816 63850816 G T ARID5B Nonsense_Mutation p.E532* 0.11 TCGA-50-5045-01 10 82187222 82187222 G A FAM213A Silent p.G182G 0.05 TCGA-50-5045-01 10 88635753 88635753 A G BMPR1A 5'UTR 0.10 TCGA-50-5045-01 11 1103270 1103270 G T MUC2 Missense_Mutation p.V2674F 0.11 unknown(0) TCGA-50-5045-01 11 113234572 113234572 G T TTC12 Missense_Mutation p.R580L 0.12 tolerated(0.09) benign(0.246) TCGA-50-5045-01 11 118374343 118374343 A G KMT2A Missense_Mutation p.N2579S 0.10 benign(0.002) TCGA-50-5045-01 11 124189170 124189170 C G OR8D2 Missense_Mutation p.R308S 0.10 deleterious(0.01) benign(0.026) TCGA-50-5045-01 11 128642774 128642774 C A FLI1 Missense_Mutation p.N161K 0.06 tolerated(0.37) benign(0.376) TCGA-50-5045-01 11 130131510 130131510 C G ZBTB44 Missense_Mutation p.E87Q 0.07 deleterious(0.02) possibly_damaging(0.861) TCGA-50-5045-01 11 134080260 134080260 C A NCAPD3 Missense_Mutation p.L157F 0.08 tolerated(0.21) benign(0.013) TCGA-50-5045-01 11 18751016 18751016 G T PTPN5 Missense_Mutation p.Q530K 0.25 deleterious(0.02) probably_damaging(0.996) TCGA-50-5045-01 11 5153348 5153348 T A OR52A5 Silent p.T175T 0.07 TCGA-50-5045-01 11 55135670 55135670 C A OR4A15 Missense_Mutation p.A104E 0.20 deleterious_low_confidence(0) benign(0.323) TCGA-50-5045-01 11 55587405 55587405 A T OR5D18 Silent p.V100V 0.04 TCGA-50-5045-01 11 55999689 55999689 T A OR5T2 Missense_Mutation p.N325Y 0.10 deleterious(0) probably_damaging(0.978) TCGA-50-5045-01 11 56184894 56184894 T A OR5R1 Missense_Mutation p.K272M 0.18 deleterious(0) probably_damaging(0.99) TCGA-50-5045-01 11 56185351 56185351 A T OR5R1 Missense_Mutation p.Y120N 0.15 deleterious(0) possibly_damaging(0.748) TCGA-50-5045-01 11 58384671 58384671 G A ZFP91 Missense_Mutation p.C402Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-50-5045-01 11 58482797 58482797 G T GLYAT Missense_Mutation p.Q61K 0.23 tolerated(0.12) possibly_damaging(0.48) TCGA-50-5045-01 11 60699188 60699188 G T TMEM132A Missense_Mutation p.W349C 0.10 tolerated(0.17) possibly_damaging(0.831) TCGA-50-5045-01 11 62301093 62301093 C G AHNAK Missense_Mutation p.D266H 0.08 probably_damaging(0.94) TCGA-50-5045-01 11 64055924 64055924 G T GPR137 Missense_Mutation p.R357L 0.18 deleterious(0) benign(0.071) TCGA-50-5045-01 11 70172854 70172854 T A PPFIA1 Missense_Mutation p.L287Q 0.13 deleterious(0) probably_damaging(0.961) TCGA-50-5045-01 11 7334985 7334985 A G SYT9 Missense_Mutation p.D286G 0.12 deleterious(0.01) possibly_damaging(0.648) TCGA-50-5045-01 11 94219247 94219247 C A MRE11A Missense_Mutation p.D53Y 0.09 deleterious(0) probably_damaging(1) TCGA-50-5045-01 12 10999703 10999703 C A PRR4 Missense_Mutation p.D122Y 0.13 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-50-5045-01 12 121434172 121434172 G T HNF1A Missense_Mutation p.G355C 0.16 deleterious(0) probably_damaging(0.983) TCGA-50-5045-01 12 123489893 123489893 C T PITPNM2 Silent p.G282G 0.13 TCGA-50-5045-01 12 18848012 18848012 C A PLCZ1 Silent p.V431V 0.12 TCGA-50-5045-01 12 32975478 32975478 T A PKP2 Missense_Mutation p.I632F 0.15 tolerated(0.52) benign(0.211) TCGA-50-5045-01 12 32975519 32975519 A C PKP2 Missense_Mutation p.L618R 0.22 deleterious(0) probably_damaging(0.984) TCGA-50-5045-01 12 41831704 41831704 C G PDZRN4 Intron 0.08 TCGA-50-5045-01 12 51399200 51399200 C T SLC11A2 Missense_Mutation p.R97H 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-50-5045-01 12 52943961 52943961 G T KRT71 Missense_Mutation p.L170M 0.05 tolerated(0.07) probably_damaging(0.965) TCGA-50-5045-01 12 58018712 58018712 G T SLC26A10 Missense_Mutation p.G431W 0.29 deleterious(0) probably_damaging(1) TCGA-50-5045-01 12 58125159 58125159 G T AGAP2 Missense_Mutation p.P712H 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-50-5045-01 12 6426509 6426509 G A PLEKHG6 Missense_Mutation p.R266Q 0.15 tolerated(0.31) benign(0.015) TCGA-50-5045-01 12 6979503 6979503 T A TPI1 Missense_Mutation p.S273T 0.26 deleterious(0) benign(0.421) TCGA-50-5045-01 12 6979504 6979504 C A TPI1 Missense_Mutation p.S273Y 0.26 deleterious(0) possibly_damaging(0.904) TCGA-50-5045-01 12 7522072 7522072 G T CD163L1 Missense_Mutation p.T1307N 0.26 deleterious(0.04) benign(0.334) TCGA-50-5045-01 12 78513538 78513538 C A NAV3 Missense_Mutation p.R1188S 0.22 tolerated(0.3) possibly_damaging(0.806) TCGA-50-5045-01 12 91371881 91371881 C G EPYC Silent p.G108G 0.06 TCGA-50-5045-01 12 9322124 9322124 C T PZP Missense_Mutation p.E635K 0.19 tolerated(0.1) benign(0.257) TCGA-50-5045-01 12 99061359 99061359 G - APAF1 Frame_Shift_Del p.E478Kfs*26 0.19 TCGA-50-5045-01 13 102250508 102250508 G T ITGBL1 Nonsense_Mutation p.G292* 0.08 TCGA-50-5045-01 13 111138029 111138029 G T COL4A2 Missense_Mutation p.G1018V 0.14 probably_damaging(0.928) TCGA-50-5045-01 13 49281393 49281393 T A CYSLTR2 Missense_Mutation p.L147Q 0.11 deleterious(0.02) probably_damaging(0.963) TCGA-50-5045-01 13 84454067 84454067 G T SLITRK1 Missense_Mutation p.L526I 0.12 deleterious(0.02) possibly_damaging(0.907) TCGA-50-5045-01 13 92560248 92560248 C T GPC5 Silent p.V446V 0.19 TCGA-50-5045-01 13 95840797 95840797 C A ABCC4 Splice_Site p.X422_splice 0.31 TCGA-50-5045-01 13 97485160 97485160 C A HS6ST3 Missense_Mutation p.P375H 0.15 deleterious(0) probably_damaging(0.99) TCGA-50-5045-01 14 19378025 19378025 C T OR11H12 Silent p.P144P 0.10 TCGA-50-5045-01 14 20249073 20249073 G T OR4M1 Missense_Mutation p.V198L 0.13 tolerated(1) benign(0.009) TCGA-50-5045-01 14 20404246 20404246 T G OR4K1 Missense_Mutation p.C141G 0.08 deleterious(0) probably_damaging(1) TCGA-50-5045-01 14 28733781 28733781 G T BNIP3P1 RNA 0.19 TCGA-50-5045-01 14 38724645 38724645 G T CLEC14A Missense_Mutation p.P195T 0.17 deleterious(0) probably_damaging(1) TCGA-50-5045-01 14 44975848 44975848 C T FSCB Missense_Mutation p.V115I 0.09 tolerated(0.14) possibly_damaging(0.468) TCGA-50-5045-01 14 47120666 47120666 G T RPL10L Missense_Mutation p.H92N 0.12 deleterious(0) possibly_damaging(0.59) TCGA-50-5045-01 14 51706885 51706885 C T TMX1 5'Flank 0.33 TCGA-50-5045-01 14 52188670 52188670 T A FRMD6 Missense_Mutation p.I455K 0.07 deleterious(0.04) possibly_damaging(0.878) TCGA-50-5045-01 14 59112813 59112813 G T DACT1 Missense_Mutation p.S491I 0.10 deleterious(0.02) benign(0.042) TCGA-50-5045-01 14 71216721 71216721 C A MAP3K9 Missense_Mutation p.G360V 0.10 deleterious(0) probably_damaging(0.996) TCGA-50-5045-01 14 81609541 81609541 C A TSHR Missense_Mutation p.A380D 0.26 tolerated(0.63) benign(0.017) TCGA-50-5045-01 14 99640499 99640499 C A BCL11B Nonsense_Mutation p.E892* 0.32 TCGA-50-5045-01 15 25496006 25496006 G T SNORD115-44 RNA 0.08 TCGA-50-5045-01 15 28467330 28467330 C A HERC2 Missense_Mutation p.M1832I 0.14 benign(0.004) TCGA-50-5045-01 15 41149044 41149044 C T SPINT1 Silent p.F487F 0.15 TCGA-50-5045-01 15 49800533 49800533 T C FAM227B Missense_Mutation p.Q296R 0.12 tolerated(0.49) benign(0.174) TCGA-50-5045-01 15 65242117 65242117 C A ANKDD1A Silent p.G469G 0.05 TCGA-50-5045-01 15 84553886 84553886 C G ADAMTSL3 Missense_Mutation p.Q332E 0.09 deleterious(0) benign(0.176) TCGA-50-5045-01 15 91450651 91450651 C T MAN2A2 Silent p.R374R 0.18 TCGA-50-5045-01 15 92988094 92988094 C A ST8SIA2 Silent p.I259I 0.05 TCGA-50-5045-01 16 10031830 10031830 C T GRIN2A Missense_Mutation p.M331I 0.20 tolerated(0.34) benign(0) TCGA-50-5045-01 16 1392054 1392054 G T BAIAP3 Missense_Mutation p.G317C 0.20 deleterious(0) probably_damaging(1) TCGA-50-5045-01 16 1537612 1537612 C A PTX4 Missense_Mutation p.R162S 0.21 deleterious(0) probably_damaging(0.911) TCGA-50-5045-01 16 17202811 17202811 C G XYLT1 Missense_Mutation p.S874T 0.18 deleterious(0.02) benign(0.41) TCGA-50-5045-01 16 20347987 20347987 C A UMOD Missense_Mutation p.L601F 0.07 deleterious(0) probably_damaging(0.995) TCGA-50-5045-01 16 22155616 22155616 T A VWA3A Missense_Mutation p.C881S 0.16 tolerated(0.13) benign(0.063) TCGA-50-5045-01 16 31230609 31230609 G T TRIM72 Splice_Site p.X163_splice 0.08 TCGA-50-5045-01 16 55897269 55897269 C A CES5A Missense_Mutation p.K296N 0.17 tolerated(0.49) benign(0.288) TCGA-50-5045-01 16 57255297 57255297 G T RSPRY1 Missense_Mutation p.W377C 0.10 deleterious(0) probably_damaging(0.999) TCGA-50-5045-01 16 69304105 69304105 G C SNTB2 Missense_Mutation p.K355N 0.20 deleterious(0.01) probably_damaging(0.96) TCGA-50-5045-01 16 76495885 76495885 G T CNTNAP4 Missense_Mutation p.V383F 0.23 deleterious(0) possibly_damaging(0.776) TCGA-50-5045-01 16 84217022 84217022 A T TAF1C Silent p.T104T 0.17 TCGA-50-5045-01 16 8999107 8999107 C A USP7 Missense_Mutation p.D504Y 0.08 deleterious(0) possibly_damaging(0.906) TCGA-50-5045-01 17 10258026 10258026 C A MYH13 Missense_Mutation p.D326Y 0.16 deleterious(0) probably_damaging(0.914) TCGA-50-5045-01 17 10411814 10411814 G T MYH1 Missense_Mutation p.T588N 0.08 deleterious(0.03) benign(0.005) TCGA-50-5045-01 17 10432387 10432387 C G MYH2 Missense_Mutation p.E1122Q 0.24 tolerated(0.08) probably_damaging(0.962) TCGA-50-5045-01 17 12656293 12656293 T A MYOCD Missense_Mutation p.L563Q 0.29 tolerated(0.54) possibly_damaging(0.812) TCGA-50-5045-01 17 18881050 18881050 T A FAM83G Silent p.P643P 0.16 TCGA-50-5045-01 17 26109133 26109133 C A NOS2 Splice_Site p.X211_splice 0.24 TCGA-50-5045-01 17 29665721 29665721 G C NF1 Splice_Site p.X2274_splice 0.21 TCGA-50-5045-01 17 38955177 38955177 G T KRT28 Missense_Mutation p.F175L 0.08 deleterious(0.01) possibly_damaging(0.766) TCGA-50-5045-01 17 45471442 45471442 C T EFCAB13 Missense_Mutation p.T593M 0.10 tolerated(0.08) probably_damaging(0.909) TCGA-50-5045-01 17 48917698 48917698 C A WFIKKN2 Missense_Mutation p.A350D 0.05 tolerated(0.09) benign(0.152) TCGA-50-5045-01 17 4995008 4995008 C T ZFP3 Missense_Mutation p.P70L 0.09 tolerated(0.67) benign(0) TCGA-50-5045-01 17 56324947 56324947 G T LPO Missense_Mutation p.W91C 0.07 deleterious(0) probably_damaging(0.999) TCGA-50-5045-01 17 56584622 56584622 C A MTMR4 Missense_Mutation p.G242C 0.12 deleterious(0) probably_damaging(1) TCGA-50-5045-01 17 72233552 72233552 G T TTYH2 Silent p.A178A 0.16 TCGA-50-5045-01 17 7578224 7578224 T A TP53 Nonsense_Mutation p.R209* 0.21 TCGA-50-5045-01 18 10696433 10696433 G A PIEZO2 Missense_Mutation p.T2198I 0.11 tolerated(0.09) benign(0.224) TCGA-50-5045-01 18 13825905 13825905 T G MC5R Silent p.G47G 0.07 TCGA-50-5045-01 18 2775813 2775813 G T SMCHD1 Missense_Mutation p.V1753F 0.17 deleterious(0) probably_damaging(0.999) TCGA-50-5045-01 18 31709869 31709869 C A NOL4 Missense_Mutation p.R127L 0.09 deleterious(0.03) probably_damaging(0.997) TCGA-50-5045-01 18 33702072 33702072 C T SLC39A6 Missense_Mutation p.M434I 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-50-5045-01 18 5397198 5397198 C A EPB41L3 Silent p.G900G 0.13 TCGA-50-5045-01 18 580817 580817 C A CETN1 Missense_Mutation p.L137I 0.13 tolerated(0.33) benign(0.067) TCGA-50-5045-01 18 59212266 59212266 C A CDH20 Missense_Mutation p.Q513K 0.09 deleterious(0.02) possibly_damaging(0.626) TCGA-50-5045-01 18 61569034 61569034 T A SERPINB2 Missense_Mutation p.V199E 0.08 deleterious(0) probably_damaging(0.998) TCGA-50-5045-01 18 61569035 61569035 G A SERPINB2 Silent p.V199V 0.09 TCGA-50-5045-01 18 6237960 6237960 C A L3MBTL4 Intron 0.15 TCGA-50-5045-01 18 70451114 70451114 T A NETO1 Missense_Mutation p.M223L 0.10 tolerated(0.42) benign(0.058) TCGA-50-5045-01 19 10124143 10124143 C A RDH8 Silent p.G10G 0.25 TCGA-50-5045-01 19 12692409 12692409 C A ZNF490 Silent p.V160V 0.05 TCGA-50-5045-01 19 12979561 12979561 C A MAST1 Missense_Mutation p.Q891K 0.18 tolerated_low_confidence(0.76) benign(0.15) TCGA-50-5045-01 19 16641682 16641682 C A CHERP Missense_Mutation p.K228N 0.23 deleterious(0) possibly_damaging(0.659) TCGA-50-5045-01 19 22605024 22605024 C A ZNF98 Translation_Start_Site p.M1? 0.16 tolerated_low_confidence(0.1) unknown(0) TCGA-50-5045-01 19 23159763 23159763 G C ZNF728 Missense_Mutation p.H126D 0.07 deleterious(0.02) benign(0.194) TCGA-50-5045-01 19 36277799 36277799 A G ARHGAP33 Silent p.E648E 0.21 TCGA-50-5045-01 19 4290668 4290668 G T SHD 3'UTR 0.39 TCGA-50-5045-01 19 51961365 51961365 G T SIGLEC8 Missense_Mutation p.Q93K 0.29 tolerated(0.18) benign(0.015) TCGA-50-5045-01 19 55331428 55331428 T A KIR3DL1 Missense_Mutation p.L206M 0.11 deleterious(0.01) benign(0.132) TCGA-50-5045-01 19 55331438 55331438 C A KIR3DL1 Missense_Mutation p.P209H 0.11 deleterious(0) benign(0.145) TCGA-50-5045-01 19 58002838 58002838 G T ZNF419 Missense_Mutation p.Q25H 0.18 deleterious(0.01) benign(0.364) TCGA-50-5045-01 19 9077714 9077714 T C MUC16 Silent p.P3244P 0.13 TCGA-50-5045-01 19 9077715 9077715 G T MUC16 Missense_Mutation p.P3244Q 0.12 unknown(0) TCGA-50-5045-01 19 9271087 9271087 G T ZNF317 Missense_Mutation p.G256W 0.24 deleterious(0) probably_damaging(1) TCGA-50-5045-01 19 9271256 9271256 G T ZNF317 Missense_Mutation p.G312V 0.12 deleterious(0) probably_damaging(0.956) TCGA-50-5045-01 1 102290750 102290750 G T OLFM3 Missense_Mutation p.Q142K 0.17 deleterious(0.01) probably_damaging(0.93) TCGA-50-5045-01 1 109525251 109525251 T C WDR47 Missense_Mutation p.H757R 0.14 tolerated(0.34) probably_damaging(0.999) TCGA-50-5045-01 1 110086058 110086058 G T GPR61 Silent p.V138V 0.09 TCGA-50-5045-01 1 117552674 117552674 C T CD101 Silent p.Y82Y 0.12 TCGA-50-5045-01 1 119575563 119575563 C A WARS2 Nonsense_Mutation p.E352* 0.10 TCGA-50-5045-01 1 144857684 144857684 G C PDE4DIP Missense_Mutation p.P2124A 0.07 tolerated(0.25) benign(0.358) TCGA-50-5045-01 1 151006549 151006549 G T PRUNE Missense_Mutation p.D401Y 0.09 deleterious(0) probably_damaging(0.976) TCGA-50-5045-01 1 152277601 152277601 G T FLG Missense_Mutation p.P3254H 0.06 unknown(0) TCGA-50-5045-01 1 152285039 152285039 G T FLG Missense_Mutation p.H775N 0.04 probably_damaging(0.979) TCGA-50-5045-01 1 153065950 153065950 T G SPRR2E 3'UTR 0.07 TCGA-50-5045-01 1 153609129 153609129 G T CHTOP Missense_Mutation p.R22L 0.39 deleterious(0) benign(0.034) TCGA-50-5045-01 1 157665181 157665181 G T FCRL3 Missense_Mutation p.S450Y 0.05 tolerated(1) possibly_damaging(0.633) TCGA-50-5045-01 1 15771101 15771101 C G CTRC Missense_Mutation p.T165S 0.18 tolerated(0.06) benign(0.181) TCGA-50-5045-01 1 15771105 15771105 C A CTRC Missense_Mutation p.N166K 0.22 deleterious(0.03) benign(0.128) TCGA-50-5045-01 1 158299789 158299789 C A CD1B Nonsense_Mutation p.E154* 0.11 TCGA-50-5045-01 1 158589026 158589026 C A SPTA1 Missense_Mutation p.W2172C 0.07 deleterious(0) probably_damaging(0.984) TCGA-50-5045-01 1 158615143 158615143 G - SPTA1 Frame_Shift_Del p.T1344Pfs*5 0.20 TCGA-50-5045-01 1 160385911 160385911 T G VANGL2 Missense_Mutation p.V44G 0.13 tolerated(0.07) probably_damaging(0.998) TCGA-50-5045-01 1 16736440 16736440 G T SPATA21 Missense_Mutation p.F81L 0.11 tolerated(0.7) benign(0) TCGA-50-5045-01 1 171607754 171607754 C T MYOC Missense_Mutation p.S238N 0.09 tolerated(0.34) benign(0.003) TCGA-50-5045-01 1 176525751 176525751 A T PAPPA2 Missense_Mutation p.D98V 0.11 deleterious_low_confidence(0.02) benign(0.079) TCGA-50-5045-01 1 198677355 198677355 G C PTPRC Missense_Mutation p.C333S 0.17 deleterious(0.03) possibly_damaging(0.816) TCGA-50-5045-01 1 200376396 200376396 T A ZNF281 Missense_Mutation p.Q813L 0.06 deleterious(0.03) benign(0.392) TCGA-50-5045-01 1 204985582 204985582 C A NFASC Missense_Mutation p.T1213K 0.16 deleterious(0) unknown(0) TCGA-50-5045-01 1 214816078 214816078 T C CENPF Missense_Mutation p.L1466P 0.17 benign(0) TCGA-50-5045-01 1 216144087 216144087 A T USH2A Missense_Mutation p.D2279E 0.13 possibly_damaging(0.593) TCGA-50-5045-01 1 230379104 230379104 G T GALNT2 Silent p.L220L 0.15 TCGA-50-5045-01 1 236912455 236912455 A T ACTN2 Missense_Mutation p.Q516L 0.18 tolerated(0.16) benign(0.341) TCGA-50-5045-01 1 241665847 241665847 C A FH Nonsense_Mutation p.E378* 0.11 TCGA-50-5045-01 1 242253259 242253259 T A PLD5 Missense_Mutation p.Q503L 0.11 deleterious(0.04) benign(0.086) TCGA-50-5045-01 1 247162722 247162722 C A ZNF695 Nonsense_Mutation p.E63* 0.10 TCGA-50-5045-01 1 247751824 247751824 G T OR2G2 Nonsense_Mutation p.E55* 0.21 TCGA-50-5045-01 1 248084469 248084469 C A OR2T8 Missense_Mutation p.D50E 0.09 deleterious(0.04) benign(0.02) TCGA-50-5045-01 1 248084472 248084472 C A OR2T8 Missense_Mutation p.H51Q 0.09 deleterious(0.05) benign(0.017) TCGA-50-5045-01 1 248512312 248512312 C G OR14C36 Nonsense_Mutation p.S79* 0.13 TCGA-50-5045-01 1 249106302 249106302 C A SH3BP5L Missense_Mutation p.A327S 0.17 tolerated(0.71) benign(0.033) TCGA-50-5045-01 1 2938505 2938505 C A ACTRT2 Missense_Mutation p.D85E 0.12 deleterious(0.03) possibly_damaging(0.59) TCGA-50-5045-01 1 36226071 36226071 C A CLSPN Missense_Mutation p.G484V 0.16 tolerated(0.68) benign(0) TCGA-50-5045-01 1 39341324 39341324 G C GJA9 Silent p.L149L 0.10 TCGA-50-5045-01 1 39833832 39833836 GAAAT AAAA MACF1 Frame_Shift_Del p.E2200Kfs*9 0.13 TCGA-50-5045-01 1 45810546 45810546 A C TESK2 Missense_Mutation p.I561R 0.10 deleterious_low_confidence(0) benign(0.001) TCGA-50-5045-01 1 50957420 50957420 G A FAF1 Silent p.R516R 0.12 TCGA-50-5045-01 1 57476938 57476938 G T DAB1 Silent p.T484T 0.10 TCGA-50-5045-01 1 6203992 6203992 C A CHD5 Splice_Site p.X645_splice 0.11 TCGA-50-5045-01 1 78167087 78167087 C T USP33 Missense_Mutation p.E857K 0.09 deleterious(0.02) possibly_damaging(0.547) TCGA-50-5045-01 1 78511902 78511902 C A GIPC2 Missense_Mutation p.L42M 0.42 deleterious(0.04) possibly_damaging(0.786) TCGA-50-5045-01 1 82456636 82456636 C A LPHN2 Missense_Mutation p.P1340H 0.06 deleterious_low_confidence(0.02) probably_damaging(0.959) TCGA-50-5045-01 1 91405405 91405405 C A ZNF644 Silent p.V502V 0.09 TCGA-50-5045-01 1 979211 979211 G T AGRN Nonsense_Mutation p.G603* 0.16 TCGA-50-5045-01 1 979212 979212 G T AGRN Missense_Mutation p.G603V 0.16 deleterious(0.01) probably_damaging(0.99) TCGA-50-5045-01 1 99771695 99771695 C A LPPR4 Missense_Mutation p.P474H 0.08 tolerated(0.36) benign(0.004) TCGA-50-5045-01 20 15967720 15967720 C T MACROD2 Missense_Mutation p.S357L 0.12 tolerated_low_confidence(0.26) benign(0.005) TCGA-50-5045-01 20 2097421 2097421 A T STK35 Silent p.P334P 0.16 TCGA-50-5045-01 20 23472256 23472256 C A CST8 5'UTR 0.21 TCGA-50-5045-01 20 62076626 62076626 C A KCNQ2 Missense_Mutation p.R160L 0.13 deleterious(0) probably_damaging(1) TCGA-50-5045-01 20 62850201 62850201 C A MYT1 Intron 0.07 TCGA-50-5045-01 20 8717677 8717677 T A PLCB1 Silent p.I682I 0.22 TCGA-50-5045-01 20 9510422 9510422 G C LAMP5 Missense_Mutation p.Q266H 0.18 deleterious(0.03) possibly_damaging(0.582) TCGA-50-5045-01 21 40871811 40871811 G T SH3BGR Silent p.V188V 0.11 TCGA-50-5045-01 22 17446080 17446080 C A GAB4 Missense_Mutation p.W456L 0.27 tolerated(0.09) benign(0.027) TCGA-50-5045-01 22 17472786 17472786 C A GAB4 Missense_Mutation p.G152V 0.16 deleterious(0) probably_damaging(0.993) TCGA-50-5045-01 22 44178097 44178097 T A EFCAB6 Silent p.S34S 0.19 TCGA-50-5045-01 22 45972975 45972975 C A FBLN1 Missense_Mutation p.D653E 0.21 tolerated(0.07) possibly_damaging(0.84) TCGA-50-5045-01 2 103324831 103324831 C A SLC9A2 Silent p.G774G 0.29 TCGA-50-5045-01 2 111423950 111423951 - A BUB1 Frame_Shift_Ins p.A283Cfs*3 0.22 TCGA-50-5045-01 2 113742497 113742497 C A IL36G Silent p.T127T 0.28 TCGA-50-5045-01 2 118716003 118716003 G A CCDC93 Missense_Mutation p.H315Y 0.18 deleterious(0.03) benign(0.002) TCGA-50-5045-01 2 135711220 135711220 A G CCNT2 Missense_Mutation p.K399E 0.19 tolerated(0.12) probably_damaging(0.991) TCGA-50-5045-01 2 168107435 168107435 G T XIRP2 Missense_Mutation p.R3178L 0.21 possibly_damaging(0.734) TCGA-50-5045-01 2 170401296 170401296 T A FASTKD1 Missense_Mutation p.N584I 0.29 deleterious(0) probably_damaging(1) TCGA-50-5045-01 2 173679007 173679007 G T RAPGEF4 Missense_Mutation p.D100Y 0.15 deleterious(0.01) probably_damaging(1) TCGA-50-5045-01 2 179438859 179438859 G C TTN Missense_Mutation p.I24000M 0.12 TCGA-50-5045-01 2 182363443 182363443 C A ITGA4 Missense_Mutation p.T545K 0.25 tolerated(0.16) benign(0.243) TCGA-50-5045-01 2 1891332 1891332 G C MYT1L Missense_Mutation p.P855R 0.21 deleterious(0) possibly_damaging(0.865) TCGA-50-5045-01 2 197583345 197583345 A G CCDC150 Missense_Mutation p.E662G 0.24 tolerated(0.05) benign(0.023) TCGA-50-5045-01 2 200298174 200298174 C G SATB2 Missense_Mutation p.R78T 0.11 deleterious(0.04) benign(0.165) TCGA-50-5045-01 2 201785791 201785791 G C ORC2 Missense_Mutation p.Q407E 0.24 deleterious(0.05) possibly_damaging(0.475) TCGA-50-5045-01 2 202901037 202901037 C T FZD7 Missense_Mutation p.S556L 0.25 deleterious(0.02) probably_damaging(0.99) TCGA-50-5045-01 2 202901043 202901043 G T FZD7 Missense_Mutation p.R558L 0.24 deleterious(0) benign(0.426) TCGA-50-5045-01 2 208994227 208994227 G T CRYGC Missense_Mutation p.P64T 0.20 deleterious(0) possibly_damaging(0.841) TCGA-50-5045-01 2 211532908 211532908 A G CPS1 Splice_Site p.X1341_splice 0.16 TCGA-50-5045-01 2 220284872 220284872 C A DES Silent p.R212R 0.11 TCGA-50-5045-01 2 242066664 242066664 C A PASK Nonsense_Mutation p.E556* 0.06 TCGA-50-5045-01 2 242741221 242741221 C A GAL3ST2 Missense_Mutation p.P49T 0.14 tolerated(0.15) benign(0.393) TCGA-50-5045-01 2 27167645 27167645 G T DPYSL5 Missense_Mutation p.R521L 0.16 tolerated(0.06) benign(0.005) TCGA-50-5045-01 2 30682489 30682489 G T LCLAT1 Missense_Mutation p.R4M 0.08 deleterious_low_confidence(0) benign(0.029) TCGA-50-5045-01 2 47748864 47748864 G A KCNK12 Silent p.L159L 0.25 TCGA-50-5045-01 2 71046533 71046533 T G CLEC4F Silent p.V74V 0.22 TCGA-50-5045-01 2 79312396 79312396 C A REG1B Missense_Mutation p.W149C 0.12 deleterious(0) probably_damaging(0.983) TCGA-50-5045-01 2 79347939 79347939 T C REG1A Intron 0.12 TCGA-50-5045-01 2 80782895 80782895 G T CTNNA2 Missense_Mutation p.A540S 0.08 tolerated(0.1) possibly_damaging(0.573) TCGA-50-5045-01 2 89976378 89976378 C A IGKV2D-30 Silent p.V83V 0.09 TCGA-50-5045-01 3 113172761 113172761 C A SPICE1 Missense_Mutation p.R565L 0.08 tolerated(0.5) possibly_damaging(0.838) TCGA-50-5045-01 3 115805271 115805271 G A LSAMP Silent p.L96L 0.07 TCGA-50-5045-01 3 121206379 121206379 C A POLQ Missense_Mutation p.S1800I 0.10 tolerated(0.3) benign(0.001) TCGA-50-5045-01 3 121980614 121980614 C G CASR Silent p.S244S 0.12 TCGA-50-5045-01 3 122545760 122545760 C A DIRC2 Missense_Mutation p.A184D 0.09 deleterious(0) probably_damaging(0.99) TCGA-50-5045-01 3 130284251 130284251 G T COL6A6 Missense_Mutation p.G359C 0.11 deleterious(0) probably_damaging(1) TCGA-50-5045-01 3 13669357 13669357 G T FBLN2 Silent p.T819T 0.11 TCGA-50-5045-01 3 147108804 147108804 G T ZIC4 Silent p.L356L 0.17 TCGA-50-5045-01 3 167250700 167250700 G T WDR49 Missense_Mutation p.P322T 0.16 tolerated(0.09) benign(0.338) TCGA-50-5045-01 3 183226293 183226293 G T KLHL6 Missense_Mutation p.L155M 0.14 tolerated(0.27) probably_damaging(0.915) TCGA-50-5045-01 3 185209406 185209416 GAGGGTTCCAG - TMEM41A Frame_Shift_Del p.P235Hfs*2 0.11 TCGA-50-5045-01 3 186978605 186978605 G T MASP1 Nonsense_Mutation p.C157* 0.08 TCGA-50-5045-01 3 19498290 19498290 C A KCNH8 Nonsense_Mutation p.S619* 0.10 TCGA-50-5045-01 3 195935336 195935336 C A ZDHHC19 Silent p.S168S 0.10 TCGA-50-5045-01 3 26751822 26751822 A G LRRC3B Missense_Mutation p.Y220C 0.15 deleterious(0) probably_damaging(0.998) TCGA-50-5045-01 3 36527655 36527655 G T STAC Nonsense_Mutation p.E201* 0.09 TCGA-50-5045-01 3 38651363 38651363 G A SCN5A Missense_Mutation p.L266F 0.21 deleterious(0) probably_damaging(0.999) TCGA-50-5045-01 3 43474216 43474216 C A ANO10 Missense_Mutation p.A601S 0.19 deleterious(0.03) benign(0.152) TCGA-50-5045-01 3 4711438 4711438 G T ITPR1 Missense_Mutation p.D648Y 0.17 deleterious(0) probably_damaging(1) TCGA-50-5045-01 3 52553399 52553399 T C STAB1 Silent p.P1718P 0.12 TCGA-50-5045-01 3 69079029 69079029 C A TMF1 Missense_Mutation p.R844I 0.11 deleterious(0) possibly_damaging(0.655) TCGA-50-5045-01 3 70014210 70014210 G C MITF Silent p.G458G 0.19 TCGA-50-5045-01 3 77147386 77147386 A T ROBO2 Missense_Mutation p.I111F 0.16 deleterious(0) unknown(0) TCGA-50-5045-01 3 77607136 77607136 G T ROBO2 Missense_Mutation p.A441S 0.13 tolerated(0.33) benign(0.005) TCGA-50-5045-01 3 89462341 89462341 C T EPHA3 Missense_Mutation p.P605S 0.06 deleterious(0) benign(0.089) TCGA-50-5045-01 4 10447452 10447452 G A ZNF518B Silent p.C167C 0.13 TCGA-50-5045-01 4 119203272 119203273 - TGTG PRSS12 Frame_Shift_Ins p.K816Tfs*18 0.12 TCGA-50-5045-01 4 123542067 123542067 G T IL21 Missense_Mutation p.R34S 0.08 deleterious(0.01) possibly_damaging(0.9) TCGA-50-5045-01 4 125591732 125591732 C G ANKRD50 Silent p.L900L 0.06 TCGA-50-5045-01 4 140640518 140640518 C A MAML3 Nonsense_Mutation p.E1126* 0.25 TCGA-50-5045-01 4 155670427 155670427 G T LRAT 3'UTR 0.17 TCGA-50-5045-01 4 164246588 164246588 C G NPY1R Missense_Mutation p.R341P 0.05 tolerated(0.21) benign(0.01) TCGA-50-5045-01 4 164247685 164247685 G A NPY1R Nonsense_Mutation p.Q8* 0.12 TCGA-50-5045-01 4 169158468 169158468 G C DDX60 Silent p.L1460L 0.25 TCGA-50-5045-01 4 169374381 169374381 C A DDX60L Missense_Mutation p.R297L 0.10 tolerated(0.1) benign(0.001) TCGA-50-5045-01 4 187540319 187540319 C G FAT1 Missense_Mutation p.S2474T 0.05 possibly_damaging(0.633) TCGA-50-5045-01 4 26483494 26483494 G - CCKAR Frame_Shift_Del p.I352Ffs*22 0.19 TCGA-50-5045-01 4 41984232 41984232 C A DCAF4L1 Missense_Mutation p.H141Q 0.10 deleterious(0) probably_damaging(0.99) TCGA-50-5045-01 4 4285410 4285410 C T LYAR Silent p.K20K 0.24 TCGA-50-5045-01 4 47033588 47033588 G A GABRB1 5'UTR 0.17 TCGA-50-5045-01 4 47455119 47455119 T A COMMD8 Missense_Mutation p.E163V 0.07 deleterious(0) probably_damaging(0.983) TCGA-50-5045-01 4 71508725 71508725 C A ENAM Missense_Mutation p.P528T 0.13 deleterious(0) probably_damaging(0.993) TCGA-50-5045-01 4 73013539 73013539 G T NPFFR2 3'UTR 0.10 TCGA-50-5045-01 4 88584415 88584415 C G DMP1 Silent p.A495A 0.06 TCGA-50-5045-01 4 94006168 94006168 C G GRID2 Silent p.G89G 0.12 TCGA-50-5045-01 4 94031995 94031995 C A GRID2 Missense_Mutation p.T209N 0.10 tolerated(0.11) benign(0.407) TCGA-50-5045-01 5 136314510 136314510 C A SPOCK1 Missense_Mutation p.D385Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-50-5045-01 5 140188799 140188799 C A PCDHA4 Missense_Mutation p.P676Q 0.08 tolerated_low_confidence(0.15) benign(0.072) TCGA-50-5045-01 5 140215087 140215087 C A PCDHA7 Missense_Mutation p.S373R 0.13 tolerated_low_confidence(0.05) benign(0.18) TCGA-50-5045-01 5 140263288 140263288 G A PCDHA13 Missense_Mutation p.A479T 0.14 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-50-5045-01 5 140564381 140564381 C - PCDHB16 Frame_Shift_Del p.Q750Nfs*6 0.11 TCGA-50-5045-01 5 140573085 140573085 G T PCDHB10 Missense_Mutation p.Q320H 0.12 deleterious_low_confidence(0) possibly_damaging(0.738) TCGA-50-5045-01 5 140589702 140589702 C A PCDHB12 Missense_Mutation p.P408Q 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.519) TCGA-50-5045-01 5 140719979 140719979 A C PCDHGA2 Missense_Mutation p.S481R 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.606) TCGA-50-5045-01 5 156899961 156899961 A G NIPAL4 Missense_Mutation p.H465R 0.11 tolerated_low_confidence(0.06) benign(0.003) TCGA-50-5045-01 5 16067903 16067903 C G MARCH11 Splice_Site p.X296_splice 0.32 TCGA-50-5045-01 5 180048747 180048747 C A FLT4 Silent p.P605P 0.08 TCGA-50-5045-01 5 24535845 24535845 C A CDH10 Missense_Mutation p.G205W 0.12 deleterious(0) probably_damaging(1) TCGA-50-5045-01 5 31323550 31323550 C A CDH6 3'UTR 0.53 TCGA-50-5045-01 5 31323551 31323551 C T CDH6 3'UTR 0.57 TCGA-50-5045-01 5 39153583 39153583 G A FYB Missense_Mutation p.P430L 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-50-5045-01 5 72875739 72875739 T A UTP15 Silent p.V459V 0.17 TCGA-50-5045-01 6 105726117 105726117 C A PREP Missense_Mutation p.G679C 0.16 deleterious(0) probably_damaging(1) TCGA-50-5045-01 6 106968952 106968952 G T AIM1 Missense_Mutation p.G882V 0.07 deleterious(0.05) possibly_damaging(0.548) TCGA-50-5045-01 6 110059538 110059538 G T FIG4 Silent p.G219G 0.12 TCGA-50-5045-01 6 117248319 117248319 T A RFX6 Missense_Mutation p.L672Q 0.16 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-50-5045-01 6 129475688 129475688 G T LAMA2 Missense_Mutation p.D356Y 0.07 deleterious(0) probably_damaging(0.992) TCGA-50-5045-01 6 158492670 158492670 G A SYNJ2 Silent p.G659G 0.09 TCGA-50-5045-01 6 170102858 170102858 G A C6orf120 Silent p.P101P 0.16 TCGA-50-5045-01 6 18457534 18457534 G T RNF144B Missense_Mutation p.W160C 0.07 deleterious(0.01) possibly_damaging(0.901) TCGA-50-5045-01 6 29429977 29429977 C A OR2H1 Missense_Mutation p.S144Y 0.06 tolerated(0.1) possibly_damaging(0.797) TCGA-50-5045-01 6 29555748 29555748 C A OR2H2 Silent p.G9G 0.16 TCGA-50-5045-01 6 29556131 29556131 G T OR2H2 Missense_Mutation p.R137L 0.12 deleterious(0.02) possibly_damaging(0.757) TCGA-50-5045-01 6 33423557 33423557 G T ZBTB9 Missense_Mutation p.G227V 0.17 deleterious(0.01) benign(0.117) TCGA-50-5045-01 6 43251506 43251506 G T TTBK1 Missense_Mutation p.A1010S 0.12 benign(0.053) TCGA-50-5045-01 6 49754648 49754648 G T PGK2 Missense_Mutation p.L85I 0.08 deleterious(0.01) probably_damaging(0.954) TCGA-50-5045-01 6 49754901 49754901 C G PGK2 5'UTR 0.11 TCGA-50-5045-01 6 51889434 51889434 C A PKHD1 Missense_Mutation p.W1725L 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-50-5045-01 6 54095509 54095509 C A MLIP Intron 0.12 TCGA-50-5045-01 6 56417869 56417869 C A DST Nonsense_Mutation p.E2618* 0.12 TCGA-50-5045-01 6 70092727 70092727 T G BAI3 Missense_Mutation p.V1427G 0.16 deleterious(0) probably_damaging(0.986) TCGA-50-5045-01 6 76744341 76744341 C T IMPG1 Silent p.Q155Q 0.11 TCGA-50-5045-01 6 78172323 78172323 C A HTR1B Silent p.S266S 0.11 TCGA-50-5045-01 6 88773893 88773893 C T SPACA1 Silent p.I229I 0.15 TCGA-50-5045-01 7 107708479 107708479 C A LAMB4 Missense_Mutation p.G810W 0.05 deleterious(0) probably_damaging(0.999) TCGA-50-5045-01 7 113518674 113518674 T C PPP1R3A Missense_Mutation p.M825V 0.14 tolerated(1) benign(0) TCGA-50-5045-01 7 11581224 11581224 C A THSD7A Missense_Mutation p.E548D 0.15 tolerated(0.13) possibly_damaging(0.776) TCGA-50-5045-01 7 117424408 117424408 G A CTTNBP2 Silent p.V723V 0.14 TCGA-50-5045-01 7 121652109 121652109 T C PTPRZ1 Silent p.S1003S 0.11 TCGA-50-5045-01 7 121653456 121653456 G A PTPRZ1 Silent p.Q1452Q 0.08 TCGA-50-5045-01 7 121676698 121676698 G T PTPRZ1 Missense_Mutation p.G1777C 0.05 deleterious(0) probably_damaging(0.993) TCGA-50-5045-01 7 122821070 122821070 G T SLC13A1 Missense_Mutation p.P62H 0.10 deleterious(0) probably_damaging(1) TCGA-50-5045-01 7 126173676 126173676 G C GRM8 Missense_Mutation p.P587R 0.11 deleterious(0) probably_damaging(0.927) TCGA-50-5045-01 7 126883292 126883292 A G GRM8 5'UTR 0.18 TCGA-50-5045-01 7 138200011 138200011 G T TRIM24 Missense_Mutation p.V180F 0.18 tolerated(0.17) probably_damaging(0.99) TCGA-50-5045-01 7 142045568 142045568 G T TRBV4-2 Missense_Mutation p.M32I 0.08 tolerated(0.14) benign(0.065) TCGA-50-5045-01 7 143771411 143771411 C A OR2A25 Missense_Mutation p.F33L 0.17 tolerated(0.62) benign(0.005) TCGA-50-5045-01 7 143771412 143771412 T A OR2A25 Missense_Mutation p.Y34N 0.17 deleterious(0.01) possibly_damaging(0.905) TCGA-50-5045-01 7 143793022 143793022 C A OR2A12 Silent p.S274S 0.19 TCGA-50-5045-01 7 149129475 149129475 C A ZNF777 Missense_Mutation p.G630C 0.07 deleterious_low_confidence(0.02) probably_damaging(0.987) TCGA-50-5045-01 7 156802971 156802971 C T MNX1 Missense_Mutation p.S25N 0.33 deleterious(0.02) unknown(0) TCGA-50-5045-01 7 19184711 19184711 G T FERD3L Missense_Mutation p.P92H 0.14 deleterious(0.02) possibly_damaging(0.88) TCGA-50-5045-01 7 23239964 23239964 G T NUPL2 Missense_Mutation p.G291V 0.35 deleterious(0) probably_damaging(0.909) TCGA-50-5045-01 7 27283045 27283045 C A EVX1 Silent p.A132A 0.23 TCGA-50-5045-01 7 29535591 29535591 C A CHN2 Missense_Mutation p.H226Q 0.29 tolerated(0.11) probably_damaging(0.998) TCGA-50-5045-01 7 31127290 31127290 C A ADCYAP1R1 Missense_Mutation p.P312T 0.13 deleterious(0) possibly_damaging(0.895) TCGA-50-5045-01 7 31127291 31127291 C A ADCYAP1R1 Missense_Mutation p.P312H 0.12 deleterious(0) probably_damaging(0.979) TCGA-50-5045-01 7 34889213 34889213 G T NPSR1 Intron 0.08 TCGA-50-5045-01 7 41729415 41729415 C A INHBA Missense_Mutation p.V372F 0.18 deleterious(0) probably_damaging(0.999) TCGA-50-5045-01 7 42006218 42006218 C A GLI3 Missense_Mutation p.C818F 0.17 tolerated(0.23) benign(0.127) TCGA-50-5045-01 7 4825961 4825961 A T AP5Z1 Missense_Mutation p.M405L 0.19 tolerated(0.54) benign(0.002) TCGA-50-5045-01 7 57528508 57528508 G A ZNF716 Missense_Mutation p.R114K 0.23 tolerated(0.19) benign(0.058) TCGA-50-5045-01 7 65435274 65435275 TG - GUSB Frame_Shift_Del p.D490Efs*36 0.12 TCGA-50-5045-01 7 70800554 70800554 G T WBSCR17 Missense_Mutation p.G86V 0.12 deleterious(0) probably_damaging(0.998) TCGA-50-5045-01 7 81598255 81598255 C A CACNA2D1 Missense_Mutation p.M781I 0.09 tolerated(0.08) benign(0.042) TCGA-50-5045-01 7 81598256 81598256 A T CACNA2D1 Missense_Mutation p.M781K 0.09 deleterious(0) benign(0.332) TCGA-50-5045-01 8 10470620 10470620 G A RP1L1 Missense_Mutation p.H330Y 0.14 benign(0.351) TCGA-50-5045-01 8 120596284 120596284 G A ENPP2 Missense_Mutation p.P510L 0.09 deleterious(0.04) benign(0.007) TCGA-50-5045-01 8 133036951 133036951 G T OC90 Missense_Mutation p.A404D 0.17 deleterious(0) probably_damaging(0.964) TCGA-50-5045-01 8 139380238 139380238 C A FAM135B 5'UTR 0.12 TCGA-50-5045-01 8 143955805 143955805 A T CYP11B1 Missense_Mutation p.F499Y 0.15 deleterious(0) probably_damaging(0.911) TCGA-50-5045-01 8 18079764 18079764 C T NAT1 Nonsense_Mutation p.Q132* 0.08 TCGA-50-5045-01 8 99961618 99961618 C T OSR2 Silent p.P146P 0.17 TCGA-50-5045-01 9 113562896 113562896 C T MUSK Silent p.L746L 0.09 TCGA-50-5045-01 9 128697757 128697757 A T PBX3 Missense_Mutation p.K238N 0.13 deleterious(0.01) possibly_damaging(0.893) TCGA-50-5045-01 9 137778291 137778291 G T FCN2 Missense_Mutation p.R192L 0.11 deleterious(0.01) possibly_damaging(0.821) TCGA-50-5045-01 9 2104102 2104102 G C SMARCA2 Missense_Mutation p.M1075I 0.18 benign(0.019) TCGA-50-5045-01 9 32407428 32407428 G T ACO1 Splice_Site p.X89_splice 0.09 TCGA-50-5045-01 9 34647906 34647906 A T GALT Missense_Mutation p.D152V 0.11 deleterious(0.03) probably_damaging(0.991) TCGA-50-5045-01 9 43626229 43626229 G T SPATA31A6 Missense_Mutation p.Q820K 0.28 tolerated(0.31) benign(0.001) TCGA-50-5045-01 9 7046895 7046895 C T KDM4C Missense_Mutation p.L765F 0.13 tolerated(0.09) benign(0.376) TCGA-50-5045-01 9 80038829 80038829 T C GNA14 3'UTR 0.14 TCGA-50-5045-01 9 84606237 84606237 G T SPATA31D1 Missense_Mutation p.Q284H 0.07 tolerated(0.08) probably_damaging(0.986) TCGA-50-5045-01 9 8521456 8521456 C A PTPRD Missense_Mutation p.G261V 0.20 deleterious(0) probably_damaging(1) TCGA-50-5045-01 X 101572264 101572264 C A NXF2 Intron 0.10 TCGA-50-5045-01 X 111195540 111195540 G C TRPC5 Missense_Mutation p.L37V 0.12 deleterious(0) probably_damaging(0.999) TCGA-50-5045-01 X 123805544 123805544 G T TENM1 Nonsense_Mutation p.S386* 0.10 TCGA-50-5045-01 X 125298594 125298594 C T DCAF12L2 Nonsense_Mutation p.W438* 0.20 TCGA-50-5045-01 X 135455096 135455096 T A GPR112 Missense_Mutation p.M2550K 0.19 deleterious(0) possibly_damaging(0.603) TCGA-50-5045-01 X 141291699 141291699 C A MAGEC2 Missense_Mutation p.W25C 0.11 deleterious(0.02) possibly_damaging(0.893) TCGA-50-5045-01 X 142718256 142718256 G - SLITRK4 Frame_Shift_Del p.L224* 0.12 TCGA-50-5045-01 X 148072760 148072760 C G AFF2 Missense_Mutation p.D1278E 0.18 deleterious(0) probably_damaging(0.938) TCGA-50-5045-01 X 150907049 150907049 C A CNGA2 Missense_Mutation p.H32N 0.12 tolerated_low_confidence(0.42) benign(0.004) TCGA-50-5045-01 X 151821409 151821409 C T GABRQ Missense_Mutation p.H522Y 0.11 tolerated(0.22) benign(0.004) TCGA-50-5045-01 X 151908824 151908824 G C CSAG1 Missense_Mutation p.Q21H 0.17 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-50-5045-01 X 153880825 153880825 G A CTAG2 Missense_Mutation p.P117L 0.05 deleterious_low_confidence(0.02) probably_damaging(0.975) TCGA-50-5045-01 X 49070669 49070669 C A CACNA1F Missense_Mutation p.G1231C 0.14 deleterious(0.03) probably_damaging(0.948) TCGA-50-5045-01 X 54840890 54840890 G T MAGED2 Intron 0.19 TCGA-50-5045-01 X 83723895 83723895 C - HDX Frame_Shift_Del p.G279Efs*38 0.11 TCGA-50-5045-01 X 84520224 84520224 G T ZNF711 Missense_Mutation p.M293I 0.07 tolerated(0.07) probably_damaging(0.992) TCGA-50-5045-01 X 89177210 89177210 A T TGIF2LX Missense_Mutation p.R42S 0.08 deleterious(0.01) benign(0.007) TCGA-50-5045-01 X 90690776 90690776 G T PABPC5 Missense_Mutation p.R67L 0.14 tolerated(0.39) benign(0.007) TCGA-50-5045-01 X 99924327 99924327 G A SRPX2 Missense_Mutation p.R393Q 0.11 tolerated(0.22) possibly_damaging(0.897) TCGA-50-5049-01 10 106160471 106160472 CT A CCDC147 Frame_Shift_Del p.L617Mfs*8 0.11 TCGA-50-5049-01 10 106907445 106907445 C A SORCS3 Missense_Mutation p.T458K 0.08 deleterious(0) probably_damaging(0.977) TCGA-50-5049-01 10 108367013 108367013 G C SORCS1 Missense_Mutation p.P1026A 0.13 deleterious(0.01) possibly_damaging(0.903) TCGA-50-5049-01 10 11504534 11504534 C T USP6NL Missense_Mutation p.S815N 0.13 tolerated_low_confidence(0.18) benign(0.005) TCGA-50-5049-01 10 118957067 118957067 G T KCNK18 Missense_Mutation p.G23V 0.07 tolerated(0.16) benign(0.28) TCGA-50-5049-01 10 118969481 118969481 G T KCNK18 Missense_Mutation p.V276L 0.12 tolerated(0.63) benign(0.007) TCGA-50-5049-01 10 119043175 119043175 C A PDZD8 Silent p.L1023L 0.07 TCGA-50-5049-01 10 125506513 125506513 G T CPXM2 Missense_Mutation p.R680S 0.06 deleterious(0) probably_damaging(1) TCGA-50-5049-01 10 1279755 1279755 A T ADARB2 Missense_Mutation p.F465Y 0.12 deleterious(0) probably_damaging(0.998) TCGA-50-5049-01 10 134623993 134623993 T A TTC40 Missense_Mutation p.R2528S 0.17 tolerated(0.41) benign(0.005) TCGA-50-5049-01 10 17130324 17130324 C A CUBN Missense_Mutation p.G596C 0.12 deleterious(0) probably_damaging(0.976) TCGA-50-5049-01 10 20290820 20290820 A G PLXDC2 Missense_Mutation p.T77A 0.09 tolerated(0.09) benign(0.069) TCGA-50-5049-01 10 21804386 21804386 C A SKIDA1 Missense_Mutation p.R789L 0.09 deleterious(0) unknown(0) TCGA-50-5049-01 10 25887285 25887285 G A GPR158 Silent p.K910K 0.13 TCGA-50-5049-01 10 30336559 30336559 C G KIAA1462 Silent p.A61A 0.10 TCGA-50-5049-01 10 31809741 31809741 A G ZEB1 Missense_Mutation p.K494R 0.13 deleterious(0.05) probably_damaging(0.995) TCGA-50-5049-01 10 33496628 33496628 T C NRP1 Missense_Mutation p.N544S 0.11 tolerated(1) benign(0) TCGA-50-5049-01 10 37418836 37418836 G T ANKRD30A Missense_Mutation p.W23C 0.22 deleterious(0.01) benign(0.369) TCGA-50-5049-01 10 37451742 37451742 C G ANKRD30A Silent p.A600A 0.18 TCGA-50-5049-01 10 43608348 43608348 C A RET Missense_Mutation p.P566T 0.11 deleterious(0) possibly_damaging(0.856) TCGA-50-5049-01 10 46254832 46254832 G T FAM21C Missense_Mutation p.D540Y 0.12 deleterious(0) probably_damaging(0.953) TCGA-50-5049-01 10 4872893 4872893 A G AKR1E2 Silent p.A22A 0.10 TCGA-50-5049-01 10 50901862 50901862 T A C10orf53 Missense_Mutation p.I47K 0.08 deleterious_low_confidence(0) possibly_damaging(0.796) TCGA-50-5049-01 10 50953905 50953905 T C OGDHL Missense_Mutation p.Y472C 0.22 deleterious(0) probably_damaging(0.928) TCGA-50-5049-01 10 52389711 52389711 G A RP11-50E11.3 RNA 0.38 TCGA-50-5049-01 10 5436254 5436254 T A TUBAL3 Silent p.V189V 0.27 TCGA-50-5049-01 10 54527923 54527923 G A MBL2 Silent p.L241L 0.12 TCGA-50-5049-01 10 55698648 55698648 C A PCDH15 Missense_Mutation p.R1100S 0.11 tolerated(0.77) benign(0.006) TCGA-50-5049-01 10 56138580 56138580 G T PCDH15 Missense_Mutation p.L94I 0.05 deleterious(0.01) probably_damaging(0.925) TCGA-50-5049-01 10 6001727 6001727 G T IL15RA Missense_Mutation p.S202R 0.12 tolerated(0.75) probably_damaging(0.991) TCGA-50-5049-01 10 63170401 63170401 G A TMEM26 Silent p.F262F 0.25 TCGA-50-5049-01 10 64975022 64975022 C A JMJD1C Splice_Site p.X339_splice 0.12 TCGA-50-5049-01 10 64976995 64976995 G A JMJD1C Missense_Mutation p.T217I 0.10 deleterious(0) probably_damaging(0.917) TCGA-50-5049-01 10 82126745 82126745 A T DYDC2 3'UTR 0.10 TCGA-50-5049-01 10 94111070 94111070 C T MARCH5 3'UTR 0.50 TCGA-50-5049-01 10 95360226 95360226 G C RBP4 Silent p.G93G 0.15 TCGA-50-5049-01 10 98408476 98408476 G A PIK3AP1 Silent p.P375P 0.10 TCGA-50-5049-01 11 102033253 102033253 A T YAP1 Silent p.T213T 0.05 TCGA-50-5049-01 11 102394117 102394117 T C MMP7 Missense_Mutation p.Y210C 0.07 deleterious(0) probably_damaging(0.978) TCGA-50-5049-01 11 102649462 102649462 G A MMP10 Missense_Mutation p.S172F 0.07 deleterious(0.01) probably_damaging(0.97) TCGA-50-5049-01 11 108384381 108384381 C G EXPH5 Missense_Mutation p.G618A 0.08 tolerated(0.14) possibly_damaging(0.796) TCGA-50-5049-01 11 113102911 113102911 C A NCAM1 Silent p.G469G 0.21 TCGA-50-5049-01 11 113111527 113111527 T A NCAM1 Intron 0.17 TCGA-50-5049-01 11 113285099 113285099 C G DRD2 Missense_Mutation p.V270L 0.07 tolerated(0.18) benign(0.002) TCGA-50-5049-01 11 115085438 115085438 C T CADM1 Missense_Mutation p.G295E 0.16 tolerated(0.15) probably_damaging(0.987) TCGA-50-5049-01 11 117280506 117280506 G C CEP164 Missense_Mutation p.K1307N 0.12 tolerated(0.15) benign(0.366) TCGA-50-5049-01 11 118279714 118279714 G A ATP5L Splice_Site p.X72_splice 0.21 TCGA-50-5049-01 11 120531062 120531062 C T GRIK4 Missense_Mutation p.P12L 0.10 tolerated(0.9) benign(0) TCGA-50-5049-01 11 121429299 121429299 G T SORL1 Splice_Site p.X888_splice 0.13 TCGA-50-5049-01 11 122954456 122954456 A G CLMP Missense_Mutation p.V163A 0.06 tolerated(0.72) benign(0.002) TCGA-50-5049-01 11 126319004 126319004 G T KIRREL3 Nonsense_Mutation p.Y299* 0.10 TCGA-50-5049-01 11 128356001 128356001 G C ETS1 Silent p.A192A 0.09 TCGA-50-5049-01 11 130340918 130340918 C T ADAMTS15 Silent p.S608S 0.08 TCGA-50-5049-01 11 134022725 134022725 C A NCAPD3 3'UTR 0.20 TCGA-50-5049-01 11 1643105 1643105 G T KRTAP5-4 Silent p.S73S 0.08 TCGA-50-5049-01 11 18313051 18313051 C A HPS5 Missense_Mutation p.S793I 0.15 tolerated(0.6) benign(0.168) TCGA-50-5049-01 11 28098612 28098612 T C KIF18A Missense_Mutation p.Y456C 0.19 deleterious(0) probably_damaging(0.94) TCGA-50-5049-01 11 33564707 33564708 - A KIAA1549L Frame_Shift_Ins p.S237Vfs*6 0.15 TCGA-50-5049-01 11 4470650 4470650 C A OR52K2 Silent p.I27I 0.12 TCGA-50-5049-01 11 46894697 46894697 C A LRP4 Missense_Mutation p.D1513Y 0.15 deleterious(0.01) probably_damaging(0.986) TCGA-50-5049-01 11 46920180 46920180 A G LRP4 Missense_Mutation p.L242P 0.06 tolerated(0.27) benign(0.083) TCGA-50-5049-01 11 47611633 47611633 A T C1QTNF4 Missense_Mutation p.S244T 0.15 deleterious(0.01) probably_damaging(0.986) TCGA-50-5049-01 11 47689131 47689131 C A AGBL2 Missense_Mutation p.D778Y 0.08 deleterious(0) benign(0.027) TCGA-50-5049-01 11 4824945 4824945 C A OR52R1 Silent p.V222V 0.07 TCGA-50-5049-01 11 4904034 4904034 G T OR51T1 Missense_Mutation p.R329L 0.08 deleterious(0) possibly_damaging(0.644) TCGA-50-5049-01 11 5173072 5173072 G T OR52A1 Silent p.V176V 0.07 TCGA-50-5049-01 11 5221658 5221658 C A OR51V1 Silent p.L91L 0.16 TCGA-50-5049-01 11 55340095 55340095 G T OR4C16 Missense_Mutation p.L164F 0.10 deleterious(0.01) benign(0.4) TCGA-50-5049-01 11 55587887 55587887 G T OR5D18 Missense_Mutation p.C261F 0.09 deleterious(0.01) benign(0.078) TCGA-50-5049-01 11 55595294 55595294 C A OR5L2 Missense_Mutation p.F200L 0.08 tolerated(0.13) benign(0.133) TCGA-50-5049-01 11 55735183 55735183 G TT OR10AG1 Frame_Shift_Ins p.P253Nfs*46 0.08 TCGA-50-5049-01 11 55761380 55761380 C A OR5F1 Missense_Mutation p.C241F 0.10 deleterious(0) probably_damaging(1) TCGA-50-5049-01 11 55904510 55904510 G C OR8J3 Missense_Mutation p.R229G 0.13 deleterious(0.01) benign(0.007) TCGA-50-5049-01 11 55927529 55927529 G T OR8K5 Silent p.R89R 0.12 TCGA-50-5049-01 11 56020511 56020511 C A OR5T3 Missense_Mutation p.T279K 0.13 deleterious(0) benign(0.405) TCGA-50-5049-01 11 56143285 56143285 T A OR8U1 Missense_Mutation p.F62L 0.06 deleterious(0.02) benign(0.076) TCGA-50-5049-01 11 5729478 5729478 G T TRIM22 Silent p.L283L 0.16 TCGA-50-5049-01 11 5758676 5758676 C A OR56B1 Silent p.A310A 0.13 TCGA-50-5049-01 11 57799343 57799343 C T OR6Q1 Nonsense_Mutation p.R307* 0.06 TCGA-50-5049-01 11 5799256 5799256 G T OR52N5 Silent p.V203V 0.11 TCGA-50-5049-01 11 58207590 58207590 A T OR5B12 Missense_Mutation p.L12H 0.08 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-50-5049-01 11 58604651 58604651 C A GLYATL2 Splice_Site p.X105_splice 0.09 TCGA-50-5049-01 11 59189613 59189613 C - OR5A2 Frame_Shift_Del p.D272Tfs*11 0.14 TCGA-50-5049-01 11 59225169 59225169 G C OR4D6 Missense_Mutation p.V246L 0.23 deleterious(0) probably_damaging(0.997) TCGA-50-5049-01 11 59271283 59271283 C T OR4D11 Missense_Mutation p.P79S 0.14 deleterious(0.01) probably_damaging(1) TCGA-50-5049-01 11 59622151 59622151 G T TCN1 Silent p.A365A 0.08 TCGA-50-5049-01 11 60157028 60157028 T C MS4A7 Missense_Mutation p.Y169H 0.11 tolerated(0.12) benign(0.272) TCGA-50-5049-01 11 61539345 61539345 C A MYRF Missense_Mutation p.P346T 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-50-5049-01 11 62931450 62931450 G T SLC22A25 Missense_Mutation p.P497H 0.13 deleterious(0) probably_damaging(0.996) TCGA-50-5049-01 11 6461961 6461961 C G HPX Splice_Site p.X28_splice 0.08 TCGA-50-5049-01 11 64795011 64795011 T C SNX15 Translation_Start_Site p.M1? 0.12 deleterious(0) benign(0.272) TCGA-50-5049-01 11 67168700 67168700 G T PPP1CA Missense_Mutation p.S20Y 0.06 tolerated_low_confidence(0.53) benign(0) TCGA-50-5049-01 11 68540772 68540772 G T CPT1A Missense_Mutation p.D567E 0.09 deleterious(0) probably_damaging(1) TCGA-50-5049-01 11 6942649 6942649 T C OR2D3 Silent p.Y139Y 0.07 TCGA-50-5049-01 11 7111186 7111186 C A RBMXL2 Missense_Mutation p.H279N 0.15 deleterious(0) benign(0) TCGA-50-5049-01 11 73071467 73071467 G T ARHGEF17 Nonsense_Mutation p.E1437* 0.06 TCGA-50-5049-01 11 76372221 76372221 C T LRRC32 Missense_Mutation p.G139D 0.11 tolerated(0.25) benign(0.042) TCGA-50-5049-01 11 8008860 8008860 T C EIF3F 5'UTR 0.08 TCGA-50-5049-01 11 8158923 8158923 A T RIC3 Splice_Site p.X174_splice 0.21 TCGA-50-5049-01 11 82882867 82882867 G T PCF11 Missense_Mutation p.S1223I 0.11 tolerated(0.38) benign(0.001) TCGA-50-5049-01 11 86663317 86663317 C A FZD4 Missense_Mutation p.G161W 0.11 deleterious(0.02) probably_damaging(0.934) TCGA-50-5049-01 11 93454778 93454778 A T KIAA1731 Intron 0.07 TCGA-50-5049-01 12 104200708 104200708 C G NT5DC3 Splice_Site p.X132_splice 0.11 TCGA-50-5049-01 12 108603991 108603991 G C WSCD2 Missense_Mutation p.M197I 0.21 tolerated(0.15) benign(0.009) TCGA-50-5049-01 12 112939999 112939999 G A PTPN11 Missense_Mutation p.D551N 0.09 tolerated(0.17) possibly_damaging(0.619) TCGA-50-5049-01 12 113553489 113553489 C T RASAL1 Silent p.L318L 0.18 TCGA-50-5049-01 12 114377880 114377880 C A RBM19 Missense_Mutation p.G608V 0.18 tolerated(0.11) benign(0.314) TCGA-50-5049-01 12 115112511 115112511 G A TBX3 Missense_Mutation p.P410L 0.25 tolerated(0.05) benign(0.41) TCGA-50-5049-01 12 117604703 117604703 C A FBXO21 Missense_Mutation p.R398L 0.13 deleterious(0) benign(0.187) TCGA-50-5049-01 12 12334236 12334236 C T LRP6 Missense_Mutation p.G372S 0.11 tolerated(0.09) probably_damaging(0.93) TCGA-50-5049-01 12 18865880 18865880 A T PLCZ1 Missense_Mutation p.W204R 0.11 deleterious(0) probably_damaging(1) TCGA-50-5049-01 12 2022194 2022194 C T CACNA2D4 Missense_Mutation p.V141I 0.23 tolerated(0.26) benign(0.066) TCGA-50-5049-01 12 20766475 20766475 G T PDE3A Silent p.V370V 0.11 TCGA-50-5049-01 12 22086820 22086820 G T ABCC9 Missense_Mutation p.H60Q 0.10 tolerated(0.08) probably_damaging(0.955) TCGA-50-5049-01 12 274680 274680 C A IQSEC3 Missense_Mutation p.F930L 0.10 tolerated(0.14) possibly_damaging(0.827) TCGA-50-5049-01 12 2795394 2795394 T A CACNA1C Missense_Mutation p.S1963T 0.09 tolerated_low_confidence(0.4) benign(0.008) TCGA-50-5049-01 12 29667520 29667520 G - TMTC1 Frame_Shift_Del p.D775Efs*6 0.10 TCGA-50-5049-01 12 42866307 42866307 C T PRICKLE1 Silent p.E4E 0.11 TCGA-50-5049-01 12 4920840 4920840 A T KCNA6 3'UTR 0.07 TCGA-50-5049-01 12 52380697 52380697 G T ACVR1B Missense_Mutation p.W452L 0.11 deleterious(0) possibly_damaging(0.591) TCGA-50-5049-01 12 53162448 53162448 T C KRT76 3'UTR 0.09 TCGA-50-5049-01 12 55524048 55524048 T C OR9K2 Missense_Mutation p.C166R 0.10 deleterious(0.01) possibly_damaging(0.658) TCGA-50-5049-01 12 56234451 56234451 C A MMP19 Missense_Mutation p.G174W 0.11 deleterious(0) probably_damaging(1) TCGA-50-5049-01 12 56234583 56234583 G T MMP19 Missense_Mutation p.R130S 0.08 tolerated(0.39) benign(0.272) TCGA-50-5049-01 12 56330338 56330338 A G DGKA Silent p.Q17Q 0.17 TCGA-50-5049-01 12 57548038 57548038 G T LRP1 Missense_Mutation p.V297L 0.08 benign(0.004) TCGA-50-5049-01 12 57573723 57573723 G T LRP1 Missense_Mutation p.V1709F 0.16 possibly_damaging(0.64) TCGA-50-5049-01 12 57975705 57975705 G T KIF5A Missense_Mutation p.A988S 0.16 tolerated_low_confidence(0.75) benign(0.004) TCGA-50-5049-01 12 72355438 72355438 G A TPH2 Intron 0.13 TCGA-50-5049-01 12 7639141 7639141 C - CD163 Frame_Shift_Del p.Q805Sfs*20 0.09 TCGA-50-5049-01 12 78400781 78400781 A T NAV3 Missense_Mutation p.K488M 0.18 deleterious(0.03) possibly_damaging(0.878) TCGA-50-5049-01 12 85449967 85449967 A T LRRIQ1 Nonsense_Mutation p.K466* 0.12 TCGA-50-5049-01 12 96180796 96180796 C T NTN4 Missense_Mutation p.G169D 0.07 deleterious(0) probably_damaging(0.992) TCGA-50-5049-01 12 97328946 97328946 G C NEDD1 Missense_Mutation p.D235H 0.11 deleterious(0) probably_damaging(1) TCGA-50-5049-01 13 103459781 103459781 G T BIVM-ERCC5 Missense_Mutation p.W27L 0.10 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-50-5049-01 13 25745110 25745110 C A AMER2 Missense_Mutation p.E216D 0.25 tolerated(0.28) benign(0.003) TCGA-50-5049-01 13 26128042 26128042 C A ATP8A2 Missense_Mutation p.A390D 0.17 deleterious(0) probably_damaging(0.988) TCGA-50-5049-01 13 28880861 28880861 G T FLT1 Missense_Mutation p.R1257S 0.18 deleterious(0.03) possibly_damaging(0.762) TCGA-50-5049-01 13 29008344 29008344 G A FLT1 Missense_Mutation p.T176I 0.18 tolerated(0.15) benign(0.049) TCGA-50-5049-01 13 36748988 36748988 G A SOHLH2 Silent p.C297C 0.16 TCGA-50-5049-01 13 37015285 37015285 G C CCNA1 Missense_Mutation p.D377H 0.11 deleterious(0) probably_damaging(0.996) TCGA-50-5049-01 13 42263515 42263515 A C VWA8 Missense_Mutation p.I1369R 0.17 deleterious(0.01) possibly_damaging(0.738) TCGA-50-5049-01 13 42263517 42263517 T A VWA8 Silent p.T1368T 0.15 TCGA-50-5049-01 13 45148670 45148670 C A TSC22D1 Missense_Mutation p.G514V 0.14 tolerated(0.06) probably_damaging(1) TCGA-50-5049-01 13 46276958 46276958 C G SPERT Missense_Mutation p.L42V 0.13 tolerated_low_confidence(0.05) benign(0.009) TCGA-50-5049-01 13 46542960 46542960 C G ZC3H13 Missense_Mutation p.S1240T 0.11 unknown(0) TCGA-50-5049-01 13 51942033 51942033 T C INTS6 Silent p.K826K 0.16 TCGA-50-5049-01 13 52952445 52952445 C A THSD1 Missense_Mutation p.V554L 0.19 deleterious(0.04) benign(0.266) TCGA-50-5049-01 13 58240955 58240955 C A PCDH17 Missense_Mutation p.P929T 0.14 tolerated(0.57) benign(0.343) TCGA-50-5049-01 13 77663000 77663000 T A MYCBP2 Silent p.L3526L 0.20 TCGA-50-5049-01 13 88329568 88329568 G C SLITRK5 Missense_Mutation p.R642P 0.10 tolerated(0.39) benign(0.004) TCGA-50-5049-01 13 96272154 96272154 C A DZIP1 Missense_Mutation p.K386N 0.19 tolerated(0.06) benign(0.02) TCGA-50-5049-01 14 100363487 100363487 G T EML1 Missense_Mutation p.G247V 0.10 deleterious(0) possibly_damaging(0.844) TCGA-50-5049-01 14 101195327 101195327 C A DLK1 Silent p.G62G 0.06 TCGA-50-5049-01 14 102548655 102548655 T C HSP90AA1 Missense_Mutation p.M750V 0.13 deleterious_low_confidence(0.02) unknown(0) TCGA-50-5049-01 14 105398445 105398445 C A PLD4 Silent p.P385P 0.13 TCGA-50-5049-01 14 105413236 105413236 G C AHNAK2 Missense_Mutation p.S2851C 0.12 probably_damaging(0.993) TCGA-50-5049-01 14 105416310 105416310 G C AHNAK2 Silent p.P1826P 0.05 TCGA-50-5049-01 14 105418992 105418992 C T AHNAK2 Silent p.K932K 0.08 TCGA-50-5049-01 14 106320525 106320525 C A IGHM Missense_Mutation p.V429L 0.17 deleterious(0.01) possibly_damaging(0.899) TCGA-50-5049-01 14 19377887 19377887 C A OR11H12 Silent p.V98V 0.15 TCGA-50-5049-01 14 20388855 20388855 C A OR4K5 Missense_Mutation p.F30L 0.07 tolerated(0.16) benign(0.008) TCGA-50-5049-01 14 20389362 20389362 T C OR4K5 Silent p.I199I 0.10 TCGA-50-5049-01 14 20612100 20612100 T A OR4N5 Missense_Mutation p.L69Q 0.26 deleterious(0.01) probably_damaging(0.933) TCGA-50-5049-01 14 20764550 20764550 G T TTC5 Missense_Mutation p.T232K 0.05 deleterious(0.01) possibly_damaging(0.708) TCGA-50-5049-01 14 21794251 21794251 G T RPGRIP1 Missense_Mutation p.D877Y 0.28 deleterious(0) probably_damaging(1) TCGA-50-5049-01 14 22102200 22102200 C A OR10G2 Missense_Mutation p.A267S 0.19 deleterious(0.03) benign(0.278) TCGA-50-5049-01 14 22600936 22600936 G A TRAV8-7 Missense_Mutation p.R94K 0.11 tolerated(0.7) benign(0.046) TCGA-50-5049-01 14 23517554 23517554 C A CDH24 Missense_Mutation p.D699Y 0.17 deleterious(0) probably_damaging(1) TCGA-50-5049-01 14 23793489 23793489 G T PABPN1 Missense_Mutation p.R291L 0.22 deleterious(0.01) benign(0.225) TCGA-50-5049-01 14 23887531 23887531 C T MYH7 Missense_Mutation p.A1353T 0.07 deleterious(0.03) possibly_damaging(0.854) TCGA-50-5049-01 14 24612835 24612835 C A PSME2 Missense_Mutation p.G200W 0.17 tolerated(0.18) possibly_damaging(0.823) TCGA-50-5049-01 14 24800522 24800522 C A ADCY4 Missense_Mutation p.R237L 0.11 tolerated(0.15) benign(0.001) TCGA-50-5049-01 14 24883947 24883947 G A NYNRIN Missense_Mutation p.E998K 0.12 tolerated_low_confidence(0.08) benign(0.006) TCGA-50-5049-01 14 29237013 29237013 C A FOXG1 Missense_Mutation p.N176K 0.14 tolerated(0.26) unknown(0) TCGA-50-5049-01 14 29237154 29237154 G T FOXG1 Missense_Mutation p.Q223H 0.15 deleterious(0) probably_damaging(0.998) TCGA-50-5049-01 14 31388178 31388178 C T STRN3 Missense_Mutation p.E412K 0.23 tolerated(0.31) benign(0.003) TCGA-50-5049-01 14 31416470 31416470 C A STRN3 Splice_Site p.X181_splice 0.23 TCGA-50-5049-01 14 44975221 44975221 C A FSCB Missense_Mutation p.A324S 0.16 tolerated(0.08) benign(0.055) TCGA-50-5049-01 14 45636393 45636393 G T FANCM Intron 0.20 TCGA-50-5049-01 14 45705137 45705137 T C MIS18BP1 Missense_Mutation p.N410D 0.09 tolerated(1) benign(0.016) TCGA-50-5049-01 14 64421515 64421515 G T SYNE2 Missense_Mutation p.L223F 0.07 probably_damaging(0.999) TCGA-50-5049-01 14 71444226 71444226 G C PCNX Missense_Mutation p.R391P 0.08 deleterious(0) probably_damaging(0.999) TCGA-50-5049-01 14 74439636 74439636 G A ENTPD5 Silent p.F326F 0.08 TCGA-50-5049-01 14 77715676 77715676 A G TMEM63C Missense_Mutation p.N638S 0.08 deleterious(0) probably_damaging(0.999) TCGA-50-5049-01 14 78399723 78399723 G C ADCK1 Missense_Mutation p.A521P 0.05 deleterious_low_confidence(0.02) benign(0.33) TCGA-50-5049-01 14 81744278 81744278 C A STON2 Silent p.L459L 0.08 TCGA-50-5049-01 14 90755074 90755074 A T NRDE2 Missense_Mutation p.L882Q 0.14 deleterious(0) probably_damaging(0.977) TCGA-50-5049-01 14 91338348 91338348 T A RPS6KA5 3'UTR 0.07 TCGA-50-5049-01 14 92353602 92353602 T A FBLN5 Missense_Mutation p.Y225F 0.08 tolerated(0.09) benign(0.007) TCGA-50-5049-01 14 94964191 94964191 T G SERPINA12 Missense_Mutation p.S182R 0.13 deleterious(0.04) benign(0.166) TCGA-50-5049-01 15 25432762 25432762 C A SNORD115-10 RNA 0.08 TCGA-50-5049-01 15 27572050 27572050 T A GABRG3 Missense_Mutation p.M122K 0.08 deleterious(0) probably_damaging(0.979) TCGA-50-5049-01 15 29346661 29346661 G T APBA2 Missense_Mutation p.G192C 0.29 deleterious_low_confidence(0) benign(0.013) TCGA-50-5049-01 15 31355463 31355463 C A TRPM1 Missense_Mutation p.V292L 0.07 tolerated(0.09) benign(0.108) TCGA-50-5049-01 15 33990137 33990137 G T RYR3 Silent p.L2063L 0.14 TCGA-50-5049-01 15 34015046 34015046 C A RYR3 Silent p.I2250I 0.08 TCGA-50-5049-01 15 43621883 43621883 C A LCMT2 Missense_Mutation p.V269L 0.10 tolerated(0.72) benign(0.003) TCGA-50-5049-01 15 44102041 44102041 C A MFAP1 Missense_Mutation p.R320L 0.07 deleterious(0) possibly_damaging(0.862) TCGA-50-5049-01 15 48051992 48051992 C A SEMA6D 5'UTR 0.20 TCGA-50-5049-01 15 48056105 48056105 T C SEMA6D Missense_Mutation p.V269A 0.13 deleterious(0) probably_damaging(1) TCGA-50-5049-01 15 48063273 48063273 A G SEMA6D Missense_Mutation p.N838S 0.13 tolerated(0.61) benign(0.016) TCGA-50-5049-01 15 48729176 48729176 C A FBN1 Missense_Mutation p.A2160S 0.19 benign(0.001) TCGA-50-5049-01 15 58001046 58001046 A T POLR2M Missense_Mutation p.K83M 0.12 deleterious(0.01) probably_damaging(0.927) TCGA-50-5049-01 15 58285171 58285171 G T ALDH1A2 Missense_Mutation p.A219E 0.11 deleterious(0) probably_damaging(0.982) TCGA-50-5049-01 15 63955193 63955193 C A HERC1 Missense_Mutation p.W2964L 0.21 probably_damaging(0.99) TCGA-50-5049-01 15 64163198 64163198 C A MIR422A RNA 0.15 TCGA-50-5049-01 15 65622728 65622728 A T IGDCC3 Silent p.T587T 0.08 TCGA-50-5049-01 15 65677373 65677373 C A IGDCC4 Silent p.P1087P 0.13 TCGA-50-5049-01 15 65702597 65702597 C A IGDCC4 Missense_Mutation p.R161L 0.08 deleterious(0) possibly_damaging(0.818) TCGA-50-5049-01 15 66857624 66857624 G - LCTL Frame_Shift_Del p.P27Qfs*59 0.27 TCGA-50-5049-01 15 69238614 69238614 C G SPESP1 Missense_Mutation p.N247K 0.10 tolerated(1) benign(0.002) TCGA-50-5049-01 15 72873191 72873191 G T ARIH1 Missense_Mutation p.M445I 0.13 deleterious(0.03) possibly_damaging(0.566) TCGA-50-5049-01 15 74337270 74337270 C T PML Missense_Mutation p.P857L 0.14 tolerated_low_confidence(0.35) benign(0.002) TCGA-50-5049-01 15 75684637 75684637 T C SIN3A Missense_Mutation p.I933V 0.17 tolerated(0.5) benign(0) TCGA-50-5049-01 15 75890754 75890754 T A SNUPN Missense_Mutation p.K343M 0.15 tolerated_low_confidence(0.06) benign(0.015) TCGA-50-5049-01 15 75981912 75981912 G T CSPG4 Missense_Mutation p.D498E 0.08 deleterious(0) probably_damaging(1) TCGA-50-5049-01 15 83455968 83455968 C A FSD2 Missense_Mutation p.G59W 0.06 deleterious(0.03) benign(0.379) TCGA-50-5049-01 15 83931874 83931874 G C BNC1 Missense_Mutation p.A710G 0.08 tolerated(0.36) benign(0.004) TCGA-50-5049-01 15 84611675 84611675 G C ADAMTSL3 Silent p.G777G 0.12 TCGA-50-5049-01 15 89400832 89400832 C A ACAN Silent p.A1672A 0.06 TCGA-50-5049-01 15 91303889 91303889 G A BLM Missense_Mutation p.R429K 0.06 tolerated(0.44) benign(0.003) TCGA-50-5049-01 15 91803568 91803568 G A SV2B Missense_Mutation p.A313T 0.15 deleterious(0) probably_damaging(0.996) TCGA-50-5049-01 16 12758931 12758931 C G CPPED1 Missense_Mutation p.G253R 0.12 deleterious(0) benign(0.068) TCGA-50-5049-01 16 14956991 14956991 G A NOMO1 Missense_Mutation p.D448N 0.36 tolerated(0.09) benign(0.376) TCGA-50-5049-01 16 17202756 17202756 C A XYLT1 Silent p.R892R 0.10 TCGA-50-5049-01 16 18810034 18810034 A G ARL6IP1 Silent p.S53S 0.07 TCGA-50-5049-01 16 19127126 19127126 G T ITPRIPL2 Missense_Mutation p.R448L 0.11 deleterious(0.01) probably_damaging(0.982) TCGA-50-5049-01 16 20357478 20357478 G T UMOD Silent p.A384A 0.10 TCGA-50-5049-01 16 20873563 20873563 C G DCUN1D3 Missense_Mutation p.D100H 0.10 deleterious(0) probably_damaging(0.988) TCGA-50-5049-01 16 22826315 22826315 G C HS3ST2 Silent p.R128R 0.19 TCGA-50-5049-01 16 23080339 23080339 G C USP31 Silent p.S1029S 0.15 TCGA-50-5049-01 16 23085137 23085137 C G USP31 Silent p.L747L 0.13 TCGA-50-5049-01 16 23436189 23436189 C A COG7 Missense_Mutation p.C297F 0.11 deleterious(0.02) benign(0.309) TCGA-50-5049-01 16 23640575 23640575 C A PALB2 Missense_Mutation p.A846S 0.07 tolerated(0.11) possibly_damaging(0.625) TCGA-50-5049-01 16 23646849 23646849 T G PALB2 Missense_Mutation p.N340H 0.11 deleterious(0.04) benign(0.067) TCGA-50-5049-01 16 24888606 24888606 A T SLC5A11 Missense_Mutation p.I169F 0.06 deleterious(0) probably_damaging(1) TCGA-50-5049-01 16 30532894 30532894 G A ITGAL Missense_Mutation p.E1141K 0.08 tolerated_low_confidence(0.6) benign(0.04) TCGA-50-5049-01 16 30750714 30750714 G T SRCAP Missense_Mutation p.R3118L 0.09 unknown(0) TCGA-50-5049-01 16 30964748 30964748 G - ORAI3 Frame_Shift_Del p.G158Afs*125 0.13 TCGA-50-5049-01 16 31308933 31308933 G T ITGAM Missense_Mutation p.Q485H 0.15 deleterious(0.04) possibly_damaging(0.738) TCGA-50-5049-01 16 31409184 31409184 G T ITGAD Silent p.L127L 0.15 TCGA-50-5049-01 16 31409185 31409185 G T ITGAD Missense_Mutation p.G128C 0.15 deleterious(0) possibly_damaging(0.908) TCGA-50-5049-01 16 47162481 47162481 G C NETO2 Missense_Mutation p.A79G 0.16 tolerated(0.27) possibly_damaging(0.61) TCGA-50-5049-01 16 48585318 48585318 C A N4BP1 Missense_Mutation p.R699I 0.07 deleterious(0) probably_damaging(0.989) TCGA-50-5049-01 16 57015098 57015098 A T CETP Missense_Mutation p.Y392F 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-50-5049-01 16 58756164 58756164 C A GOT2 Missense_Mutation p.A89S 0.17 tolerated(0.65) benign(0.001) TCGA-50-5049-01 16 64981755 64981755 G C CDH11 Missense_Mutation p.S714R 0.06 tolerated(0.11) probably_damaging(0.999) TCGA-50-5049-01 16 67917734 67917734 C T EDC4 Intron 0.15 TCGA-50-5049-01 16 68598507 68598507 A G ZFP90 Missense_Mutation p.E606G 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-50-5049-01 16 77396106 77396106 C A ADAMTS18 Missense_Mutation p.W371L 0.18 deleterious(0) probably_damaging(0.987) TCGA-50-5049-01 16 81181756 81181756 C A PKD1L2 RNA 0.21 TCGA-50-5049-01 16 84907567 84907567 A T CRISPLD2 Missense_Mutation p.K385I 0.17 tolerated(0.16) benign(0.211) TCGA-50-5049-01 16 89294046 89294046 G T ZNF778 Silent p.T422T 0.08 TCGA-50-5049-01 17 10406376 10406376 G T MYH1 Missense_Mutation p.L961I 0.21 deleterious(0) probably_damaging(0.997) TCGA-50-5049-01 17 10433048 10433048 G T MYH2 Missense_Mutation p.L984I 0.08 deleterious(0.01) possibly_damaging(0.566) TCGA-50-5049-01 17 11593206 11593206 T A DNAH9 Missense_Mutation p.F1356Y 0.47 benign(0.106) TCGA-50-5049-01 17 11593507 11593507 G A DNAH9 Silent p.R1456R 0.34 TCGA-50-5049-01 17 18682089 18682090 GA - FBXW10 Frame_Shift_Del p.K880Tfs*7 0.12 TCGA-50-5049-01 17 21731573 21731573 G T UBBP4 Missense_Mutation p.E216D 0.22 tolerated(0.13) possibly_damaging(0.821) TCGA-50-5049-01 17 27613955 27613955 C G NUFIP2 Missense_Mutation p.V353L 0.16 deleterious(0.02) benign(0.086) TCGA-50-5049-01 17 32959728 32959728 C T TMEM132E Silent p.S406S 0.16 TCGA-50-5049-01 17 3656700 3656700 G T ITGAE Missense_Mutation p.L518M 0.09 deleterious(0.03) probably_damaging(0.982) TCGA-50-5049-01 17 37437684 37437684 T A FBXL20 Silent p.A218A 0.07 TCGA-50-5049-01 17 38183255 38183255 C G MED24 Missense_Mutation p.E521D 0.33 tolerated(0.56) benign(0.055) TCGA-50-5049-01 17 3839652 3839652 C A ATP2A3 Silent p.P811P 0.08 TCGA-50-5049-01 17 39280335 39280335 C A KRTAP4-12 Missense_Mutation p.G14C 0.14 deleterious(0) unknown(0) TCGA-50-5049-01 17 3954138 3954138 T G ZZEF1 Missense_Mutation p.T1934P 0.22 tolerated(0.2) benign(0.066) TCGA-50-5049-01 17 39594757 39594757 C A KRT38 Missense_Mutation p.A336S 0.10 tolerated(0.11) probably_damaging(0.969) TCGA-50-5049-01 17 39871799 39871799 G T GAST Silent p.G37G 0.19 TCGA-50-5049-01 17 39985171 39985171 G A NT5C3B Silent p.Y146Y 0.16 TCGA-50-5049-01 17 42248402 42248402 C A ASB16 Missense_Mutation p.A82D 0.24 tolerated(0.14) possibly_damaging(0.58) TCGA-50-5049-01 17 42477491 42477491 C A GPATCH8 Missense_Mutation p.G652W 0.12 deleterious_low_confidence(0.02) probably_damaging(0.963) TCGA-50-5049-01 17 44953934 44953934 G T WNT9B Missense_Mutation p.E308D 0.10 tolerated(0.39) benign(0.024) TCGA-50-5049-01 17 45232085 45232085 T A CDC27 Missense_Mutation p.T304S 0.33 tolerated(0.77) benign(0.001) TCGA-50-5049-01 17 45299181 45299181 G T MYL4 Silent p.T149T 0.23 TCGA-50-5049-01 17 53798315 53798315 C A TMEM100 Missense_Mutation p.E39D 0.18 deleterious(0.04) probably_damaging(0.987) TCGA-50-5049-01 17 56247135 56247135 T C OR4D2 Missense_Mutation p.M40T 0.18 tolerated(0.08) benign(0.002) TCGA-50-5049-01 17 56386312 56386312 C A BZRAP1 Nonsense_Mutation p.G1441* 0.09 TCGA-50-5049-01 17 57725719 57725719 C A CLTC Nonsense_Mutation p.S213* 0.15 TCGA-50-5049-01 17 61995747 61995747 G T GH1 Missense_Mutation p.H44N 0.08 tolerated(0.05) possibly_damaging(0.731) TCGA-50-5049-01 17 62020273 62020273 C T SCN4A Missense_Mutation p.V1401M 0.13 deleterious(0.04) benign(0.027) TCGA-50-5049-01 17 62022924 62022924 C A SCN4A Silent p.L1172L 0.15 TCGA-50-5049-01 17 62850636 62850636 G A LRRC37A3 3'UTR 0.18 TCGA-50-5049-01 17 66265122 66265122 A T SLC16A6 3'UTR 0.11 TCGA-50-5049-01 17 67161197 67161197 C A ABCA10 Missense_Mutation p.V1064L 0.13 tolerated(1) benign(0.006) TCGA-50-5049-01 17 67161198 67161198 C T ABCA10 Missense_Mutation p.M1063I 0.14 tolerated(0.65) benign(0) TCGA-50-5049-01 17 68128795 68128795 T G KCNJ16 Silent p.L189L 0.16 TCGA-50-5049-01 17 7004962 7004962 C A ASGR2 Missense_Mutation p.D290Y 0.18 deleterious(0) probably_damaging(0.998) TCGA-50-5049-01 17 72322435 72322435 T A KIF19 5'UTR 0.23 TCGA-50-5049-01 17 72368146 72368146 C A GPR142 Missense_Mutation p.H266N 0.10 tolerated(0.08) probably_damaging(0.989) TCGA-50-5049-01 17 7350393 7350393 A G CHRNB1 Missense_Mutation p.I129V 0.09 tolerated(1) benign(0.006) TCGA-50-5049-01 17 74071323 74071323 C A GALR2 Missense_Mutation p.S120Y 0.18 deleterious(0) probably_damaging(0.965) TCGA-50-5049-01 17 74077485 74077485 T A ZACN Splice_Site p.X223_splice 0.05 TCGA-50-5049-01 17 74157643 74157643 G T RNF157 Silent p.S346S 0.09 TCGA-50-5049-01 17 74288492 74288492 G T QRICH2 Silent p.V606V 0.15 TCGA-50-5049-01 17 7577046 7577046 C A TP53 Nonsense_Mutation p.E298* 0.15 TCGA-50-5049-01 17 77043860 77043860 A G C1QTNF1 Missense_Mutation p.N179S 0.10 tolerated(0.18) benign(0.074) TCGA-50-5049-01 17 8051528 8051528 G T PER1 Silent p.P366P 0.13 TCGA-50-5049-01 18 22669505 22669505 G T ZNF521 Missense_Mutation p.S1277Y 0.12 deleterious(0.02) benign(0.02) TCGA-50-5049-01 18 28586988 28586988 A T DSC3 Nonsense_Mutation p.Y591* 0.09 TCGA-50-5049-01 18 28983423 28983423 C A DSG4 Missense_Mutation p.P488T 0.33 deleterious(0.01) possibly_damaging(0.49) TCGA-50-5049-01 18 29125892 29125892 A G DSG2 Missense_Mutation p.N848S 0.06 tolerated(0.53) benign(0.009) TCGA-50-5049-01 18 29790580 29790580 T C MEP1B Missense_Mutation p.Y346H 0.07 tolerated(0.15) benign(0.253) TCGA-50-5049-01 18 3187492 3187492 T A MYOM1 Missense_Mutation p.E305D 0.08 tolerated(0.35) benign(0.06) TCGA-50-5049-01 18 32431892 32431892 G T DTNA Missense_Mutation p.R424I 0.24 deleterious(0) probably_damaging(0.981) TCGA-50-5049-01 18 3277950 3277950 A T MYL12B 3'UTR 0.29 TCGA-50-5049-01 18 3534574 3534574 T A DLGAP1 Silent p.A699A 0.49 TCGA-50-5049-01 18 40695528 40695528 C A RIT2 5'UTR 0.41 TCGA-50-5049-01 18 61328427 61328427 G T SERPINB3 Missense_Mutation p.N8K 0.13 deleterious(0.04) possibly_damaging(0.906) TCGA-50-5049-01 18 72345910 72345910 G T ZNF407 Nonsense_Mutation p.G979* 0.26 TCGA-50-5049-01 18 72345911 72345911 G T ZNF407 Missense_Mutation p.G979V 0.26 tolerated(0.28) possibly_damaging(0.603) TCGA-50-5049-01 18 77737634 77737634 T A TXNL4A Missense_Mutation p.E74V 0.09 deleterious(0) possibly_damaging(0.798) TCGA-50-5049-01 18 77896229 77896229 G T ADNP2 Missense_Mutation p.R978I 0.15 deleterious(0) probably_damaging(0.992) TCGA-50-5049-01 19 10502118 10502118 G A CDC37 3'UTR 0.18 TCGA-50-5049-01 19 1056364 1056364 G T ABCA7 Silent p.V1484V 0.18 TCGA-50-5049-01 19 10624666 10624666 G C S1PR5 Missense_Mutation p.A341G 0.62 tolerated(0.44) benign(0.002) TCGA-50-5049-01 19 11411906 11411906 C A TSPAN16 Missense_Mutation p.F124L 0.27 tolerated(0.72) benign(0.004) TCGA-50-5049-01 19 11943196 11943196 G T ZNF440 Missense_Mutation p.G402V 0.24 deleterious(0) probably_damaging(0.989) TCGA-50-5049-01 19 15233752 15233752 A T ILVBL Silent p.I185I 0.09 TCGA-50-5049-01 19 15273348 15273348 C A NOTCH3 Silent p.A1947A 0.12 TCGA-50-5049-01 19 15298035 15298035 T C NOTCH3 Missense_Mutation p.Y574C 0.09 deleterious(0) probably_damaging(0.999) TCGA-50-5049-01 19 15807280 15807280 G T CYP4F12 Missense_Mutation p.G452V 0.10 tolerated(0.06) benign(0.024) TCGA-50-5049-01 19 17366264 17366264 C T USHBP1 Missense_Mutation p.G541D 0.08 tolerated(0.15) benign(0.014) TCGA-50-5049-01 19 17426798 17426799 - A DDA1 Frame_Shift_Ins p.N67Efs*93 0.18 TCGA-50-5049-01 19 17664400 17664400 C T FAM129C 3'UTR 0.11 TCGA-50-5049-01 19 17949121 17949121 T C JAK3 Missense_Mutation p.Q507R 0.14 tolerated(0.22) benign(0.081) TCGA-50-5049-01 19 18085084 18085084 G T KCNN1 Missense_Mutation p.W129C 0.24 deleterious(0.02) probably_damaging(0.971) TCGA-50-5049-01 19 18273927 18273927 G C PIK3R2 Silent p.R420R 0.26 TCGA-50-5049-01 19 18368671 18368671 C A KIAA1683 Missense_Mutation p.M1141I 0.14 tolerated(0.61) benign(0.002) TCGA-50-5049-01 19 19606889 19606889 G C GATAD2A Missense_Mutation p.S262T 0.20 deleterious(0.03) benign(0.003) TCGA-50-5049-01 19 20027413 20027413 G T ZNF93 Nonsense_Mutation p.G59* 0.12 TCGA-50-5049-01 19 21131981 21131981 A T ZNF85 Nonsense_Mutation p.K221* 0.18 TCGA-50-5049-01 19 21607572 21607572 A T ZNF493 Missense_Mutation p.K704M 0.13 tolerated(0.06) probably_damaging(0.964) TCGA-50-5049-01 19 22155210 22155210 G T ZNF208 Missense_Mutation p.L876I 0.13 deleterious(0.02) unknown(0) TCGA-50-5049-01 19 22157345 22157345 T C ZNF208 Missense_Mutation p.K164R 0.08 tolerated(0.26) benign(0.267) TCGA-50-5049-01 19 22847741 22847741 G A ZNF492 Missense_Mutation p.E424K 0.12 tolerated(0.17) benign(0.003) TCGA-50-5049-01 19 22939803 22939804 GA - ZNF99 3'Flank 0.12 TCGA-50-5049-01 19 30935931 30935931 C A ZNF536 Missense_Mutation p.L488I 0.13 tolerated(0.28) benign(0.098) TCGA-50-5049-01 19 31769270 31769270 C A TSHZ3 Nonsense_Mutation p.E477* 0.13 TCGA-50-5049-01 19 35941483 35941483 G T FFAR2 Missense_Mutation p.Q289H 0.14 tolerated(0.11) possibly_damaging(0.625) TCGA-50-5049-01 19 36018706 36018706 C A SBSN Missense_Mutation p.A160S 0.09 tolerated(0.4) probably_damaging(0.994) TCGA-50-5049-01 19 36212499 36212499 C T KMT2B Silent p.P750P 0.24 TCGA-50-5049-01 19 36227603 36227603 G T KMT2B Missense_Mutation p.S2391I 0.20 benign(0.083) TCGA-50-5049-01 19 36340177 36340177 G T NPHS1 Silent p.A267A 0.11 TCGA-50-5049-01 19 36349667 36349667 T A KIRREL2 Silent p.P141P 0.18 TCGA-50-5049-01 19 36369812 36369812 G T APLP1 Missense_Mutation p.R557S 0.17 tolerated(0.5) probably_damaging(0.995) TCGA-50-5049-01 19 36558728 36558728 A T WDR62 Splice_Site p.X234_splice 0.17 TCGA-50-5049-01 19 37441368 37441368 G T ZNF568 Missense_Mutation p.R438L 0.15 deleterious(0) possibly_damaging(0.793) TCGA-50-5049-01 19 37643910 37643910 T A ZNF585A Silent p.P242P 0.21 TCGA-50-5049-01 19 37904988 37904988 C G ZNF569 Missense_Mutation p.C191S 0.16 deleterious(0.02) benign(0.004) TCGA-50-5049-01 19 38159928 38159928 C A ZNF781 3'UTR 0.18 TCGA-50-5049-01 19 38689108 38689108 C G SIPA1L3 Silent p.P1640P 0.21 TCGA-50-5049-01 19 38910858 38910858 T A RASGRP4 Missense_Mutation p.Q141L 0.30 tolerated(0.41) benign(0.309) TCGA-50-5049-01 19 38997149 38997149 G T RYR1 Silent p.T2885T 0.15 TCGA-50-5049-01 19 39009862 39009862 C G RYR1 Missense_Mutation p.Q3343E 0.17 benign(0) TCGA-50-5049-01 19 40995992 40995992 C A SPTBN4 Missense_Mutation p.T111K 0.22 deleterious(0) benign(0.115) TCGA-50-5049-01 19 43514114 43514114 C G PSG11 3'UTR 0.23 TCGA-50-5049-01 19 43523068 43523068 G T PSG11 Missense_Mutation p.P188H 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-50-5049-01 19 43528960 43528960 C A PSG11 Missense_Mutation p.A105S 0.13 deleterious(0.01) probably_damaging(0.976) TCGA-50-5049-01 19 43575948 43575948 G A PSG2 Nonsense_Mutation p.Q290* 0.17 TCGA-50-5049-01 19 43579540 43579540 G A PSG2 Silent p.A225A 0.10 TCGA-50-5049-01 19 43702333 43702333 G T PSG4 Silent p.A175A 0.18 TCGA-50-5049-01 19 44223254 44223254 C T IRGC Missense_Mutation p.P182S 0.11 tolerated(0.08) probably_damaging(0.995) TCGA-50-5049-01 19 44636290 44636290 G C ZNF225 Missense_Mutation p.G508A 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-50-5049-01 19 44739160 44739160 A C ZNF227 Missense_Mutation p.K193Q 0.18 tolerated(1) benign(0.005) TCGA-50-5049-01 19 45015707 45015707 C T CEACAM20 RNA 0.28 TCGA-50-5049-01 19 4550174 4550174 G T SEMA6B Nonsense_Mutation p.S411* 0.24 TCGA-50-5049-01 19 45901276 45901276 C A PPP1R13L Missense_Mutation p.G62V 0.15 tolerated_low_confidence(0.07) benign(0.093) TCGA-50-5049-01 19 46095190 46095190 G A GPR4 5'UTR 0.16 TCGA-50-5049-01 19 46916052 46916052 C A CCDC8 Nonsense_Mutation p.E6* 0.23 TCGA-50-5049-01 19 47763903 47763903 G T CCDC9 Missense_Mutation p.S90I 0.08 deleterious(0.03) benign(0.396) TCGA-50-5049-01 19 47823415 47823415 G T C5AR1 Silent p.L127L 0.20 TCGA-50-5049-01 19 49684691 49684691 A T TRPM4 Missense_Mutation p.E412D 0.11 deleterious(0.04) possibly_damaging(0.62) TCGA-50-5049-01 19 50216267 50216267 G T CPT1C Missense_Mutation p.M724I 0.08 tolerated(0.25) benign(0.048) TCGA-50-5049-01 19 50302620 50302620 G T AP2A1 Silent p.L334L 0.27 TCGA-50-5049-01 19 50958471 50958471 C A MYBPC2 Silent p.I707I 0.06 TCGA-50-5049-01 19 51274753 51274753 A C GPR32 Missense_Mutation p.Q299P 0.10 tolerated(0.42) benign(0.012) TCGA-50-5049-01 19 51630361 51630361 G C SIGLEC9 Missense_Mutation p.D275H 0.15 tolerated(0.08) unknown(0) TCGA-50-5049-01 19 51738451 51738451 T C CD33 Missense_Mutation p.I262T 0.15 tolerated(0.1) possibly_damaging(0.802) TCGA-50-5049-01 19 51919589 51919589 G A SIGLEC10 Silent p.I243I 0.18 TCGA-50-5049-01 19 52132675 52132675 G T SIGLEC5 Silent p.T212T 0.13 TCGA-50-5049-01 19 52618394 52618394 T A ZNF616 Missense_Mutation p.N675Y 0.07 tolerated(0.48) benign(0.084) TCGA-50-5049-01 19 53015127 53015127 T C ZNF578 Missense_Mutation p.L498P 0.16 deleterious(0) probably_damaging(1) TCGA-50-5049-01 19 53208789 53208789 C T ZNF611 Missense_Mutation p.E507K 0.23 deleterious(0.01) benign(0.354) TCGA-50-5049-01 19 53383932 53383932 G T ZNF320 Missense_Mutation p.L483I 0.18 tolerated(0.35) benign(0.001) TCGA-50-5049-01 19 53473326 53473326 T A ZNF702P RNA 0.19 TCGA-50-5049-01 19 54255706 54255706 G T MIR519A1 RNA 0.13 TCGA-50-5049-01 19 54314539 54314539 G C NLRP12 Missense_Mutation p.P125R 0.10 tolerated(0.56) possibly_damaging(0.894) TCGA-50-5049-01 19 54721091 54721091 G C LILRB3 Silent p.A590A 0.19 TCGA-50-5049-01 19 55175015 55175015 C A LILRB4 Missense_Mutation p.H20Q 0.21 tolerated(0.31) benign(0.001) TCGA-50-5049-01 19 55330026 55330026 C A KIR3DL1 Silent p.P109P 0.13 TCGA-50-5049-01 19 55365433 55365433 A T KIR3DL2 Missense_Mutation p.Y196F 0.10 tolerated(0.21) possibly_damaging(0.569) TCGA-50-5049-01 19 55710186 55710186 G T PTPRH Silent p.S505S 0.13 TCGA-50-5049-01 19 55817713 55817713 C T BRSK1 Missense_Mutation p.R662C 0.18 deleterious(0) probably_damaging(0.957) TCGA-50-5049-01 19 56436007 56436007 C A NLRP13 Nonsense_Mutation p.G136* 0.13 TCGA-50-5049-01 19 56436008 56436008 C A NLRP13 Missense_Mutation p.Q135H 0.13 deleterious(0.02) benign(0.395) TCGA-50-5049-01 19 57325840 57325840 G T PEG3 Missense_Mutation p.P1324T 0.16 deleterious(0.04) probably_damaging(0.994) TCGA-50-5049-01 19 57327572 57327572 G T PEG3 Missense_Mutation p.D746E 0.18 tolerated(0.68) benign(0.029) TCGA-50-5049-01 19 57743931 57743931 G T AURKC Silent p.L106L 0.20 TCGA-50-5049-01 19 57839241 57839241 A T ZNF543 Silent p.I137I 0.13 TCGA-50-5049-01 19 57839243 57839243 G T ZNF543 Missense_Mutation p.G138V 0.15 tolerated(0.06) benign(0.077) TCGA-50-5049-01 19 58806148 58806148 G T ZNF8 Missense_Mutation p.S325I 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-50-5049-01 19 7832409 7832409 T A CLEC4M Missense_Mutation p.L315Q 0.12 deleterious(0) probably_damaging(0.973) TCGA-50-5049-01 19 8321907 8321907 G A CERS4 Silent p.L229L 0.18 TCGA-50-5049-01 19 8619559 8619559 C G MYO1F Missense_Mutation p.E70D 0.24 deleterious(0.05) benign(0.444) TCGA-50-5049-01 19 8807769 8807769 C A ACTL9 3'UTR 0.08 TCGA-50-5049-01 19 9225719 9225719 A T OR7G1 Missense_Mutation p.C241S 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-50-5049-01 19 9868262 9868262 T C ZNF846 Silent p.T497T 0.12 TCGA-50-5049-01 1 102290605 102290605 A T OLFM3 Missense_Mutation p.L190H 0.10 deleterious(0.04) probably_damaging(0.997) TCGA-50-5049-01 1 111145926 111145926 G C KCNA2 Silent p.T493T 0.13 TCGA-50-5049-01 1 111772460 111772460 C T CHI3L2 Intron 0.11 TCGA-50-5049-01 1 117127668 117127668 C A IGSF3 Missense_Mutation p.R836L 0.09 tolerated(0.09) possibly_damaging(0.499) TCGA-50-5049-01 1 118574352 118574352 A G SPAG17 Missense_Mutation p.L1191P 0.24 tolerated(0.22) possibly_damaging(0.898) TCGA-50-5049-01 1 12942103 12942103 C A PRAMEF4 Missense_Mutation p.L149F 0.20 tolerated(0.06) benign(0.034) TCGA-50-5049-01 1 145562033 145562033 C A ANKRD35 Missense_Mutation p.A574D 0.15 tolerated(0.38) benign(0.016) TCGA-50-5049-01 1 145578347 145578347 G T PIAS3 Missense_Mutation p.G104C 0.11 tolerated(0.18) possibly_damaging(0.827) TCGA-50-5049-01 1 147380357 147380357 A T GJA8 Missense_Mutation p.Y92F 0.12 deleterious(0) probably_damaging(0.998) TCGA-50-5049-01 1 150280583 150280583 G T MRPS21 Missense_Mutation p.R62L 0.17 benign(0.262) TCGA-50-5049-01 1 150940140 150940140 C G CERS2 Missense_Mutation p.Q173H 0.14 deleterious(0.02) probably_damaging(0.956) TCGA-50-5049-01 1 151206944 151206944 T A PIP5K1A Missense_Mutation p.L304H 0.11 deleterious(0) probably_damaging(0.987) TCGA-50-5049-01 1 151377695 151377695 G C POGZ Silent p.V1272V 0.08 TCGA-50-5049-01 1 152278945 152278945 A G FLG Missense_Mutation p.V2806A 0.06 benign(0) TCGA-50-5049-01 1 152280577 152280577 G T FLG Missense_Mutation p.S2262Y 0.11 possibly_damaging(0.608) TCGA-50-5049-01 1 152648701 152648701 C A LCE2C Silent p.G70G 0.15 TCGA-50-5049-01 1 153309769 153309769 C A PGLYRP4 Silent p.L277L 0.10 TCGA-50-5049-01 1 153390625 153390625 C T S100A7A Missense_Mutation p.R23C 0.13 tolerated(0.07) benign(0.002) TCGA-50-5049-01 1 153924914 153924915 TG - CRTC2 Frame_Shift_Del p.S237Ffs*9 0.20 TCGA-50-5049-01 1 156209462 156209462 G T PMF1 Intron 0.11 TCGA-50-5049-01 1 1573207 1573207 C A CDK11B Nonsense_Mutation p.E464* 0.36 TCGA-50-5049-01 1 157490895 157490895 C A FCRL5 Silent p.L809L 0.11 TCGA-50-5049-01 1 157716558 157716558 G T FCRL2 Missense_Mutation p.Q499K 0.13 tolerated(0.89) benign(0.021) TCGA-50-5049-01 1 157772257 157772257 C A FCRL1 Missense_Mutation p.V173L 0.14 deleterious(0.02) benign(0.438) TCGA-50-5049-01 1 158299213 158299213 G T CD1B Missense_Mutation p.S278Y 0.16 tolerated(0.17) possibly_damaging(0.814) TCGA-50-5049-01 1 158299803 158299803 C A CD1B Missense_Mutation p.C149F 0.19 deleterious(0.04) benign(0.004) TCGA-50-5049-01 1 158517516 158517516 C A OR6Y1 Missense_Mutation p.R127L 0.12 deleterious(0) possibly_damaging(0.877) TCGA-50-5049-01 1 158577045 158577045 C G OR10Z1 Missense_Mutation p.L273V 0.13 deleterious(0.02) probably_damaging(0.998) TCGA-50-5049-01 1 159272653 159272653 G T FCER1A Missense_Mutation p.G22V 0.12 tolerated(0.15) benign(0.122) TCGA-50-5049-01 1 159923983 159923983 G A SLAMF9 5'UTR 0.27 TCGA-50-5049-01 1 160340859 160340859 A G NHLH1 Missense_Mutation p.K113R 0.18 deleterious(0) possibly_damaging(0.874) TCGA-50-5049-01 1 161188691 161188691 G A FCER1G Silent p.Q73Q 0.09 TCGA-50-5049-01 1 161487915 161487915 G C FCGR2A Missense_Mutation p.D311H 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.478) TCGA-50-5049-01 1 162745481 162745481 C A DDR2 Silent p.L632L 0.12 TCGA-50-5049-01 1 163044417 163044417 T A RGS4 3'UTR 0.32 TCGA-50-5049-01 1 166039455 166039455 C G FAM78B 3'UTR 0.10 TCGA-50-5049-01 1 169565348 169565348 C T SELP Missense_Mutation p.G639E 0.09 tolerated(1) benign(0.001) TCGA-50-5049-01 1 169581475 169581475 G T SELP Missense_Mutation p.A314D 0.16 tolerated(0.09) possibly_damaging(0.908) TCGA-50-5049-01 1 169586396 169586396 C A SELP Missense_Mutation p.W117C 0.09 deleterious(0) probably_damaging(1) TCGA-50-5049-01 1 171178097 171178097 G T FMO2 3'UTR 0.10 TCGA-50-5049-01 1 173947753 173947753 C A RC3H1 Missense_Mutation p.Q325H 0.12 deleterious(0) probably_damaging(0.998) TCGA-50-5049-01 1 175049508 175049508 C A TNN Missense_Mutation p.R332S 0.15 tolerated(0.22) benign(0.171) TCGA-50-5049-01 1 177030247 177030247 T C ASTN1 Silent p.E146E 0.17 TCGA-50-5049-01 1 17708498 17708498 A T PADI6 RNA 0.13 TCGA-50-5049-01 1 177249846 177249846 C G BRINP2 Missense_Mutation p.L512V 0.12 deleterious(0.04) benign(0.017) TCGA-50-5049-01 1 178858785 178858785 G - RALGPS2 Frame_Shift_Del p.D401Mfs*5 0.10 TCGA-50-5049-01 1 179077507 179077507 C A ABL2 Missense_Mutation p.Q965H 0.18 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-50-5049-01 1 179437807 179437807 G C AXDND1 Intron 0.11 TCGA-50-5049-01 1 180945565 180945565 T C STX6 3'UTR 0.27 TCGA-50-5049-01 1 186023012 186023012 G T HMCN1 Missense_Mutation p.R2252S 0.12 possibly_damaging(0.785) TCGA-50-5049-01 1 190234075 190234075 G C BRINP3 Missense_Mutation p.L180V 0.12 deleterious(0) possibly_damaging(0.523) TCGA-50-5049-01 1 19180801 19180801 A T TAS1R2 Missense_Mutation p.V388E 0.12 deleterious(0) probably_damaging(0.999) TCGA-50-5049-01 1 196395110 196395110 A T KCNT2 Nonsense_Mutation p.Y331* 0.10 TCGA-50-5049-01 1 197073483 197073483 C G ASPM Missense_Mutation p.R1633P 0.12 deleterious(0) probably_damaging(0.995) TCGA-50-5049-01 1 198682150 198682150 C A PTPRC Missense_Mutation p.P414T 0.08 tolerated(0.29) benign(0.043) TCGA-50-5049-01 1 20009760 20009760 C A TMCO4 Missense_Mutation p.G560W 0.18 deleterious_low_confidence(0) benign(0.379) TCGA-50-5049-01 1 200594086 200594086 C T KIF14 5'Flank 0.07 TCGA-50-5049-01 1 201858597 201858597 G T SHISA4 Missense_Mutation p.W33L 0.10 deleterious(0.01) possibly_damaging(0.876) TCGA-50-5049-01 1 202300918 202300918 C - UBE2T 3'UTR 0.12 TCGA-50-5049-01 1 203134389 203134389 G T ADORA1 Silent p.R114R 0.22 TCGA-50-5049-01 1 203144711 203144711 G T MYBPH Missense_Mutation p.S58Y 0.11 tolerated(0.06) benign(0.248) TCGA-50-5049-01 1 203149656 203149656 G A CHI3L1 Missense_Mutation p.S279L 0.11 deleterious(0.04) benign(0.126) TCGA-50-5049-01 1 203452913 203452913 G T PRELP Missense_Mutation p.D201Y 0.13 tolerated(0.12) probably_damaging(1) TCGA-50-5049-01 1 205492412 205492412 C G CDK18 Missense_Mutation p.N39K 0.08 tolerated_low_confidence(0.17) benign(0.197) TCGA-50-5049-01 1 214815375 214815375 G T CENPF Nonsense_Mutation p.E1232* 0.15 TCGA-50-5049-01 1 215847618 215847618 A T USH2A Silent p.P4545P 0.13 TCGA-50-5049-01 1 216011392 216011392 G - USH2A Frame_Shift_Del p.T3105Lfs*55 0.09 TCGA-50-5049-01 1 216420508 216420508 C G USH2A Missense_Mutation p.G743A 0.13 probably_damaging(0.996) TCGA-50-5049-01 1 220195814 220195837 GCTCCCTTTTTTCATTTCTTCCCA TCTCCCCG EPRS Frame_Shift_Del p.W323Rfs*17 0.08 TCGA-50-5049-01 1 220195837 220195837 A G EPRS Missense_Mutation p.W323R 0.09 deleterious(0) probably_damaging(0.993) TCGA-50-5049-01 1 221057723 221057723 G T HLX Nonsense_Mutation p.E382* 0.20 TCGA-50-5049-01 1 227152708 227152708 A T ADCK3 Missense_Mutation p.D62V 0.17 tolerated_low_confidence(0.15) benign(0.028) TCGA-50-5049-01 1 229657378 229657378 C - ABCB10 Frame_Shift_Del p.Q638Rfs*12 0.19 TCGA-50-5049-01 1 229730202 229730202 C T TAF5L Missense_Mutation p.D538N 0.18 deleterious(0.01) possibly_damaging(0.841) TCGA-50-5049-01 1 230492710 230492710 T C PGBD5 Missense_Mutation p.Y161C 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-50-5049-01 1 235969785 235969785 T C LYST Missense_Mutation p.K884R 0.17 tolerated_low_confidence(0.25) benign(0.003) TCGA-50-5049-01 1 236180456 236180456 G T NID1 Missense_Mutation p.T749K 0.15 deleterious(0.02) benign(0.037) TCGA-50-5049-01 1 236924413 236924413 G T ACTN2 Silent p.T822T 0.18 TCGA-50-5049-01 1 236924444 236924444 G T ACTN2 Missense_Mutation p.A833S 0.14 tolerated(0.19) probably_damaging(0.999) TCGA-50-5049-01 1 237659966 237659966 A G RYR2 Missense_Mutation p.Y706C 0.08 probably_damaging(0.996) TCGA-50-5049-01 1 237711850 237711850 G T RYR2 Missense_Mutation p.R1009L 0.14 probably_damaging(0.951) TCGA-50-5049-01 1 237730037 237730037 G T RYR2 Missense_Mutation p.G1129C 0.17 probably_damaging(1) TCGA-50-5049-01 1 237730038 237730038 G T RYR2 Missense_Mutation p.G1129V 0.17 probably_damaging(1) TCGA-50-5049-01 1 237777524 237777524 G C RYR2 Missense_Mutation p.R1699P 0.09 probably_damaging(1) TCGA-50-5049-01 1 237811774 237811774 C T RYR2 Missense_Mutation p.A2458V 0.19 possibly_damaging(0.814) TCGA-50-5049-01 1 237947550 237947550 G - RYR2 Frame_Shift_Del p.G4180Afs*11 0.10 TCGA-50-5049-01 1 238050766 238050766 G - ZP4 Frame_Shift_Del p.R218Gfs*9 0.20 TCGA-50-5049-01 1 240071400 240071400 C A CHRM3 Missense_Mutation p.P217T 0.14 deleterious(0.03) possibly_damaging(0.547) TCGA-50-5049-01 1 240975308 240975308 C A RGS7 Missense_Mutation p.G331V 0.09 deleterious(0) possibly_damaging(0.855) TCGA-50-5049-01 1 240975309 240975309 C A RGS7 Missense_Mutation p.G331C 0.09 deleterious(0) probably_damaging(0.952) TCGA-50-5049-01 1 241725627 241725627 G T KMO Nonsense_Mutation p.G204* 0.12 TCGA-50-5049-01 1 242253272 242253272 C A PLD5 Missense_Mutation p.A499S 0.17 tolerated(0.92) possibly_damaging(0.622) TCGA-50-5049-01 1 247588721 247588721 C A NLRP3 Missense_Mutation p.T659N 0.15 deleterious(0) probably_damaging(0.939) TCGA-50-5049-01 1 247608039 247608039 T G NLRP3 Missense_Mutation p.L976R 0.08 deleterious(0) probably_damaging(0.999) TCGA-50-5049-01 1 247694964 247694964 G T OR2C3 Missense_Mutation p.P284T 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-50-5049-01 1 247768905 247768905 G T OR2G3 Missense_Mutation p.E6D 0.15 tolerated(0.61) benign(0.001) TCGA-50-5049-01 1 248059679 248059679 C A OR2W3 Missense_Mutation p.A264D 0.11 tolerated(0.08) benign(0.002) TCGA-50-5049-01 1 248129102 248129102 T C OR2AK2 Missense_Mutation p.C157R 0.12 tolerated(0.21) possibly_damaging(0.808) TCGA-50-5049-01 1 248308455 248308455 A G OR2M5 Silent p.A2A 0.10 TCGA-50-5049-01 1 248344004 248344004 G T OR2M2 Silent p.T239T 0.20 TCGA-50-5049-01 1 248637465 248637465 A T OR2T3 Missense_Mutation p.T272S 0.06 tolerated(0.52) probably_damaging(0.998) TCGA-50-5049-01 1 248757048 248757048 G T OR2T10 Missense_Mutation p.L8M 0.20 tolerated(0.23) possibly_damaging(0.497) TCGA-50-5049-01 1 24977944 24977944 T A SRRM1 Missense_Mutation p.V189D 0.14 unknown(0) TCGA-50-5049-01 1 33333801 33333801 G T FNDC5 Silent p.S58S 0.10 TCGA-50-5049-01 1 34663443 34663443 A C C1orf94 Missense_Mutation p.Q313P 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-50-5049-01 1 36603508 36603508 G A TRAPPC3 Silent p.S104S 0.30 TCGA-50-5049-01 1 3669132 3669132 C A CCDC27 Silent p.S29S 0.23 TCGA-50-5049-01 1 36884607 36884607 G T OSCP1 Missense_Mutation p.N336K 0.14 tolerated(0.1) benign(0.037) TCGA-50-5049-01 1 39800883 39800883 G C MACF1 Intron 0.27 TCGA-50-5049-01 1 39853090 39853090 C G MACF1 Missense_Mutation p.S2797C 0.06 possibly_damaging(0.866) TCGA-50-5049-01 1 42046123 42046123 C A HIVEP3 Missense_Mutation p.R1449I 0.33 probably_damaging(0.997) TCGA-50-5049-01 1 53480639 53480639 G T SCP2 Missense_Mutation p.A387S 0.20 deleterious(0) probably_damaging(0.992) TCGA-50-5049-01 1 53755277 53755277 T A LRP8 Missense_Mutation p.E110V 0.25 deleterious(0.01) probably_damaging(0.919) TCGA-50-5049-01 1 55134563 55134563 C T MROH7 Silent p.L448L 0.18 TCGA-50-5049-01 1 55166854 55166854 G T MROH7 Missense_Mutation p.K1048N 0.15 tolerated(0.1) probably_damaging(0.992) TCGA-50-5049-01 1 57252874 57252874 C A C1orf168 Silent p.V309V 0.07 TCGA-50-5049-01 1 57476878 57476878 G T DAB1 Silent p.T504T 0.07 TCGA-50-5049-01 1 60312847 60312847 G C HOOK1 Missense_Mutation p.D307H 0.13 deleterious(0) probably_damaging(1) TCGA-50-5049-01 1 66102767 66102767 G C LEPR 3'UTR 0.35 TCGA-50-5049-01 1 66723362 66723362 C T PDE4B Missense_Mutation p.A170V 0.07 deleterious(0) possibly_damaging(0.839) TCGA-50-5049-01 1 6705159 6705159 T C DNAJC11 Missense_Mutation p.I308V 0.08 tolerated(0.37) benign(0) TCGA-50-5049-01 1 75626632 75626632 T A LHX8 3'UTR 0.09 TCGA-50-5049-01 1 86591502 86591502 G A COL24A1 Nonsense_Mutation p.Q173* 0.14 TCGA-50-5049-01 1 87041270 87041270 G C CLCA4 Missense_Mutation p.D647H 0.06 deleterious(0) probably_damaging(1) TCGA-50-5049-01 1 89662871 89662871 C A GBP4 Missense_Mutation p.V53L 0.29 tolerated(0.12) benign(0.377) TCGA-50-5049-01 1 97981407 97981407 C G DPYD Missense_Mutation p.G539R 0.21 deleterious(0) probably_damaging(0.965) TCGA-50-5049-01 1 99418657 99418657 G T LPPR5 Missense_Mutation p.A197D 0.30 deleterious(0) probably_damaging(0.994) TCGA-50-5049-01 1 99772549 99772549 C A LPPR4 Silent p.R759R 0.29 TCGA-50-5049-01 20 207925 207925 C A DEFB129 5'UTR 0.29 TCGA-50-5049-01 20 2464827 2464827 C A ZNF343 Silent p.P260P 0.07 TCGA-50-5049-01 20 24988421 24988421 C A ACSS1 Missense_Mutation p.D683Y 0.08 deleterious(0) benign(0.308) TCGA-50-5049-01 20 30512840 30512840 G A TTLL9 Silent p.V231V 0.13 TCGA-50-5049-01 20 31672780 31672780 C A BPIFB4 Missense_Mutation p.R254S 0.15 deleterious(0.04) benign(0.03) TCGA-50-5049-01 20 31828099 31828099 C G BPIFA1 Missense_Mutation p.I163M 0.21 deleterious(0.01) possibly_damaging(0.786) TCGA-50-5049-01 20 32873372 32873372 C T AHCY Silent p.L347L 0.23 TCGA-50-5049-01 20 35061089 35061089 C G DLGAP4 Missense_Mutation p.C323W 0.22 deleterious(0) probably_damaging(0.999) TCGA-50-5049-01 20 35748921 35748921 C G MROH8 Missense_Mutation p.G766R 0.28 deleterious(0) probably_damaging(0.996) TCGA-50-5049-01 20 35832307 35832307 A G RPN2 Missense_Mutation p.T167A 0.21 tolerated(0.5) benign(0.361) TCGA-50-5049-01 20 37356650 37356650 A T SLC32A1 Missense_Mutation p.S316C 0.14 deleterious(0) probably_damaging(0.984) TCGA-50-5049-01 20 37529274 37529274 T A PPP1R16B Missense_Mutation p.L173H 0.11 deleterious(0) probably_damaging(0.999) TCGA-50-5049-01 20 43379220 43379220 G T KCNK15 Missense_Mutation p.R245L 0.10 deleterious(0) probably_damaging(0.992) TCGA-50-5049-01 20 44048032 44048032 C T PIGT Silent p.S197S 0.09 TCGA-50-5049-01 20 44663650 44663650 A T SLC12A5 Missense_Mutation p.E62V 0.11 tolerated(0.62) benign(0.002) TCGA-50-5049-01 20 45130108 45130108 C A ZNF334 Nonsense_Mutation p.G624* 0.14 TCGA-50-5049-01 20 47265980 47265980 C A PREX1 Missense_Mutation p.G1055W 0.12 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-50-5049-01 20 47265982 47265982 C A PREX1 Missense_Mutation p.S1054I 0.14 deleterious_low_confidence(0.02) benign(0.002) TCGA-50-5049-01 20 4778672 4778672 T A RASSF2 Missense_Mutation p.Q40L 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-50-5049-01 20 51872417 51872417 C T TSHZ2 Missense_Mutation p.T807I 0.25 deleterious(0) probably_damaging(0.998) TCGA-50-5049-01 20 52198754 52198754 C A ZNF217 Missense_Mutation p.Q204H 0.06 deleterious(0) probably_damaging(0.999) TCGA-50-5049-01 20 5283320 5283320 A T PROKR2 Missense_Mutation p.I174N 0.07 deleterious(0) probably_damaging(0.969) TCGA-50-5049-01 20 54824621 54824621 C T MC3R Missense_Mutation p.A241V 0.09 deleterious(0.01) probably_damaging(1) TCGA-50-5049-01 20 56098207 56098207 A T CTCFL Missense_Mutation p.V224E 0.11 tolerated(0.19) benign(0.025) TCGA-50-5049-01 20 56138123 56138123 C A PCK1 Missense_Mutation p.T217K 0.11 tolerated(0.87) probably_damaging(0.968) TCGA-50-5049-01 20 57766799 57766799 C T ZNF831 Missense_Mutation p.S242L 0.08 tolerated(0.31) benign(0.416) TCGA-50-5049-01 20 57768672 57768672 A - ZNF831 Frame_Shift_Del p.G868Afs*27 0.14 TCGA-50-5049-01 20 60551211 60551211 G C TAF4 3'UTR 0.10 TCGA-50-5049-01 20 61386226 61386226 G T NTSR1 Missense_Mutation p.V302L 0.46 tolerated(0.07) benign(0.058) TCGA-50-5049-01 20 8782749 8782749 C A PLCB1 Intron 0.18 TCGA-50-5049-01 21 10933919 10933919 C A TPTE Missense_Mutation p.K320N 0.08 tolerated(0.13) possibly_damaging(0.463) TCGA-50-5049-01 21 15750613 15750613 G A HSPA13 Missense_Mutation p.L163F 0.15 deleterious(0.03) benign(0.091) TCGA-50-5049-01 21 22656612 22656612 C G NCAM2 Missense_Mutation p.R77G 0.07 tolerated(0.06) probably_damaging(0.953) TCGA-50-5049-01 21 22841100 22841100 G A NCAM2 Missense_Mutation p.R631K 0.09 tolerated(1) benign(0.001) TCGA-50-5049-01 21 28306945 28306945 C A ADAMTS5 Missense_Mutation p.G510V 0.20 tolerated(0.19) probably_damaging(0.994) TCGA-50-5049-01 21 31797994 31797994 G T KRTAP13-3 Silent p.S79S 0.15 TCGA-50-5049-01 21 33974319 33974319 C A C21orf59 Intron 0.26 TCGA-50-5049-01 21 40568393 40568393 G A BRWD1 Intron 0.10 TCGA-50-5049-01 21 43645891 43645891 A T ABCG1 Silent p.G51G 0.12 TCGA-50-5049-01 22 17072912 17072912 T A CCT8L2 Missense_Mutation p.M177L 0.21 tolerated(0.23) benign(0.006) TCGA-50-5049-01 22 17072913 17072913 G T CCT8L2 Silent p.P176P 0.21 TCGA-50-5049-01 22 24574208 24574208 G T CABIN1 3'UTR 0.22 TCGA-50-5049-01 22 30782716 30782716 T A RNF215 Silent p.P106P 0.19 TCGA-50-5049-01 22 30951023 30951023 C A GAL3ST1 Nonsense_Mutation p.E397* 0.15 TCGA-50-5049-01 22 31722987 31722987 T A PATZ1 Missense_Mutation p.N652Y 0.10 deleterious(0) probably_damaging(0.998) TCGA-50-5049-01 22 37524495 37524495 T G IL2RB Missense_Mutation p.S433R 0.19 tolerated(0.18) benign(0.066) TCGA-50-5049-01 22 39498047 39498047 G T APOBEC3H Missense_Mutation p.K181N 0.20 tolerated(0.13) possibly_damaging(0.899) TCGA-50-5049-01 22 42783046 42783046 G C NFAM1 Missense_Mutation p.I234M 0.11 tolerated(0.12) possibly_damaging(0.73) TCGA-50-5049-01 22 45312390 45312390 C A PHF21B Missense_Mutation p.A112S 0.12 deleterious(0.04) possibly_damaging(0.771) TCGA-50-5049-01 22 50659383 50659383 C A TUBGCP6 Silent p.G1135G 0.15 TCGA-50-5049-01 2 103335231 103335231 C A MFSD9 Missense_Mutation p.S358I 0.33 deleterious(0.01) probably_damaging(0.914) TCGA-50-5049-01 2 10350553 10350553 G A C2orf48 Missense_Mutation p.G104R 0.17 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-50-5049-01 2 10350596 10350596 G T C2orf48 Missense_Mutation p.G118V 0.12 tolerated_low_confidence(0.47) probably_damaging(0.979) TCGA-50-5049-01 2 107041516 107041516 A G RGPD3 Silent p.T969T 0.10 TCGA-50-5049-01 2 110325410 110325410 C T SEPT10 Silent p.K248K 0.08 TCGA-50-5049-01 2 110881425 110881425 A T NPHP1 Missense_Mutation p.F715L 0.15 deleterious(0) probably_damaging(0.998) TCGA-50-5049-01 2 128351172 128351172 C T MYO7B Missense_Mutation p.R733W 0.08 deleterious(0) possibly_damaging(0.606) TCGA-50-5049-01 2 141122263 141122263 C A LRP1B Nonsense_Mutation p.G3700* 0.11 TCGA-50-5049-01 2 141245256 141245256 T C LRP1B Missense_Mutation p.Y3058C 0.22 probably_damaging(0.926) TCGA-50-5049-01 2 141625694 141625694 C A LRP1B Missense_Mutation p.E1436D 0.13 benign(0.217) TCGA-50-5049-01 2 15358968 15358968 C G NBAS Missense_Mutation p.E2121Q 0.08 tolerated(0.09) benign(0.424) TCGA-50-5049-01 2 155307078 155307078 A T GALNT13 3'UTR 0.43 TCGA-50-5049-01 2 157436299 157436299 A T GPD2 Missense_Mutation p.Q686L 0.25 deleterious(0.02) possibly_damaging(0.797) TCGA-50-5049-01 2 163030285 163030285 G A FAP Missense_Mutation p.T661I 0.14 deleterious(0.01) possibly_damaging(0.902) TCGA-50-5049-01 2 168102148 168102148 G A XIRP2 Missense_Mutation p.G1416S 0.29 probably_damaging(1) TCGA-50-5049-01 2 168103039 168103039 G A XIRP2 Missense_Mutation p.V1713I 0.09 benign(0.205) TCGA-50-5049-01 2 171910294 171910294 C A TLK1 Nonsense_Mutation p.G237* 0.23 TCGA-50-5049-01 2 175006616 175006616 G A OLA1 Silent p.P162P 0.11 TCGA-50-5049-01 2 179455492 179455492 G T TTN Silent p.V20320V 0.07 TCGA-50-5049-01 2 179577161 179577161 G T TTN Missense_Mutation p.T9163N 0.06 TCGA-50-5049-01 2 179585355 179585355 C G TTN Missense_Mutation p.G7712R 0.20 TCGA-50-5049-01 2 179616755 179616755 C G TTN Intron 0.07 TCGA-50-5049-01 2 179742780 179742780 C A CCDC141 Missense_Mutation p.D604Y 0.27 deleterious(0) possibly_damaging(0.847) TCGA-50-5049-01 2 185801377 185801377 C A ZNF804A Nonsense_Mutation p.C418* 0.07 TCGA-50-5049-01 2 185801697 185801697 C A ZNF804A Missense_Mutation p.P525H 0.32 deleterious(0) possibly_damaging(0.62) TCGA-50-5049-01 2 185802923 185802923 C A ZNF804A Missense_Mutation p.L934I 0.08 tolerated(0.24) probably_damaging(0.952) TCGA-50-5049-01 2 186689186 186689186 C A FSIP2 Missense_Mutation p.P6907T 0.18 benign(0.005) TCGA-50-5049-01 2 187692819 187692819 C A ZSWIM2 Missense_Mutation p.M598I 0.07 tolerated(0.58) benign(0.001) TCGA-50-5049-01 2 189870985 189870985 G A COL3A1 Silent p.K1031K 0.09 TCGA-50-5049-01 2 189875573 189875573 G A COL3A1 Missense_Mutation p.G1404E 0.12 unknown(0) TCGA-50-5049-01 2 189931133 189931133 C A COL5A2 Missense_Mutation p.G516W 0.26 probably_damaging(0.999) TCGA-50-5049-01 2 192288585 192288585 G T MYO1B Missense_Mutation p.D1104Y 0.28 deleterious(0.02) probably_damaging(0.992) TCGA-50-5049-01 2 196729567 196729567 C A DNAH7 Missense_Mutation p.C2271F 0.10 deleterious(0.03) probably_damaging(0.996) TCGA-50-5049-01 2 201468757 201468757 C A AOX1 Missense_Mutation p.F202L 0.08 deleterious(0.02) benign(0.023) TCGA-50-5049-01 2 202550695 202550695 C A MPP4 Nonsense_Mutation p.E147* 0.18 TCGA-50-5049-01 2 202899448 202899448 G C FZD7 Silent p.L26L 0.33 TCGA-50-5049-01 2 206480373 206480373 A T PARD3B Nonsense_Mutation p.K1090* 0.10 TCGA-50-5049-01 2 206640996 206640996 C A NRP2 Intron 0.24 TCGA-50-5049-01 2 206991267 206991267 C A NDUFS1 Missense_Mutation p.M710I 0.12 tolerated(0.07) benign(0.05) TCGA-50-5049-01 2 207041555 207041555 C A GPR1 Missense_Mutation p.L139F 0.08 deleterious(0.05) possibly_damaging(0.863) TCGA-50-5049-01 2 207169696 207169696 C A ZDBF2 Silent p.P148P 0.36 TCGA-50-5049-01 2 207171384 207171384 C T ZDBF2 Missense_Mutation p.P711L 0.20 tolerated(0.11) probably_damaging(0.931) TCGA-50-5049-01 2 211438024 211438024 A C CPS1 Silent p.A49A 0.07 TCGA-50-5049-01 2 211525286 211525286 G T CPS1 Silent p.V1284V 0.04 TCGA-50-5049-01 2 212251683 212251683 G A ERBB4 Nonsense_Mutation p.Q1126* 0.08 TCGA-50-5049-01 2 215645838 215645838 T A BARD1 Missense_Mutation p.I254L 0.21 tolerated(0.38) benign(0.001) TCGA-50-5049-01 2 218700935 218700935 C G TNS1 Splice_Site p.X878_splice 0.12 TCGA-50-5049-01 2 220034065 220034065 C A SLC23A3 Missense_Mutation p.Q128H 0.05 tolerated(0.65) benign(0.034) TCGA-50-5049-01 2 220350089 220350089 G T SPEG Missense_Mutation p.R2544L 0.08 benign(0.187) TCGA-50-5049-01 2 220505177 220505177 G C SLC4A3 Silent p.V1128V 0.07 TCGA-50-5049-01 2 223158477 223158477 C A PAX3 Intron 0.20 TCGA-50-5049-01 2 227661390 227661390 C A IRS1 Missense_Mutation p.V689F 0.29 tolerated(0.08) benign(0.037) TCGA-50-5049-01 2 233398755 233398755 G T CHRND Nonsense_Mutation p.E388* 0.10 TCGA-50-5049-01 2 234591014 234591014 C G UGT1A7 Missense_Mutation p.A144G 0.10 deleterious(0.02) possibly_damaging(0.895) TCGA-50-5049-01 2 237172946 237172946 C G ASB18 Missense_Mutation p.D15H 0.10 deleterious(0.01) probably_damaging(0.962) TCGA-50-5049-01 2 238253293 238253293 C T COL6A3 Silent p.T2456T 0.08 TCGA-50-5049-01 2 238726448 238726448 G T RBM44 Missense_Mutation p.G297C 0.09 deleterious(0.02) possibly_damaging(0.846) TCGA-50-5049-01 2 239161618 239161618 C T PER2 Missense_Mutation p.A1016T 0.14 tolerated(0.62) benign(0.007) TCGA-50-5049-01 2 24276809 24276809 G A FKBP1B Silent p.V25V 0.08 TCGA-50-5049-01 2 28755041 28755041 C T PLB1 Silent p.L179L 0.13 TCGA-50-5049-01 2 31165143 31165143 G T GALNT14 Missense_Mutation p.F290L 0.25 deleterious(0) probably_damaging(1) TCGA-50-5049-01 2 31215704 31215704 C A GALNT14 Intron 0.20 TCGA-50-5049-01 2 31489370 31489370 G T EHD3 Nonsense_Mutation p.E470* 0.34 TCGA-50-5049-01 2 36994405 36994405 T A VIT Missense_Mutation p.V219E 0.39 tolerated(0.22) benign(0.014) TCGA-50-5049-01 2 39944434 39944434 G T TMEM178A 3'UTR 0.29 TCGA-50-5049-01 2 40655842 40655842 C A SLC8A1 Missense_Mutation p.A527S 0.10 deleterious(0) probably_damaging(0.945) TCGA-50-5049-01 2 44099139 44099139 G A ABCG8 Missense_Mutation p.R330H 0.25 tolerated(0.06) benign(0.014) TCGA-50-5049-01 2 45169936 45169936 C A SIX3 Silent p.P231P 0.14 TCGA-50-5049-01 2 45646961 45646961 C G SRBD1 Missense_Mutation p.V708L 0.07 deleterious(0) probably_damaging(1) TCGA-50-5049-01 2 49247236 49247236 T A FSHR Missense_Mutation p.K96N 0.25 tolerated(0.73) benign(0.001) TCGA-50-5049-01 2 55555429 55555429 C A CCDC88A Splice_Site p.X998_splice 0.27 TCGA-50-5049-01 2 61505300 61505300 C G USP34 Missense_Mutation p.Q1811H 0.21 tolerated(0.06) benign(0.04) TCGA-50-5049-01 2 62054330 62054330 C A FAM161A Missense_Mutation p.D639Y 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-50-5049-01 2 69049695 69049695 C A ARHGAP25 Nonsense_Mutation p.S475* 0.21 TCGA-50-5049-01 2 69098246 69098246 G T BMP10 Missense_Mutation p.P82Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-50-5049-01 2 74763528 74763528 C A LOXL3 Missense_Mutation p.W328L 0.37 deleterious(0) probably_damaging(0.993) TCGA-50-5049-01 2 74782721 74782721 C T DOK1 Missense_Mutation p.A127V 0.09 tolerated(0.14) benign(0.004) TCGA-50-5049-01 2 77748805 77748805 C T LRRTM4 5'UTR 0.21 TCGA-50-5049-01 2 79253237 79253237 C A REG3G Silent p.A6A 0.17 TCGA-50-5049-01 2 79348008 79348008 C A REG1A Nonsense_Mutation p.Y7* 0.15 TCGA-50-5049-01 2 79384330 79384330 G T REG3A 3'UTR 0.25 TCGA-50-5049-01 2 80529463 80529463 C A LRRTM1 Silent p.P494P 0.24 TCGA-50-5049-01 2 88082302 88082302 C A RGPD2 Missense_Mutation p.G1414V 0.20 tolerated(0.11) probably_damaging(0.944) TCGA-50-5049-01 2 89266241 89266241 G T IGKV1-6 Missense_Mutation p.P6H 0.08 tolerated(0.08) benign(0.292) TCGA-50-5049-01 2 90212233 90212233 C A IGKV3D-11 Missense_Mutation p.Q109K 0.21 deleterious(0.04) benign(0.013) TCGA-50-5049-01 2 96809566 96809566 T C DUSP2 Missense_Mutation p.H314R 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.498) TCGA-50-5049-01 2 96992329 96992329 G T ITPRIPL1 5'UTR 0.29 TCGA-50-5049-01 2 97217799 97217799 A T ARID5A Missense_Mutation p.T512S 0.09 tolerated(0.34) benign(0.031) TCGA-50-5049-01 3 100362478 100362478 G T GPR128 Splice_Site p.X316_splice 0.21 TCGA-50-5049-01 3 107096575 107096575 T A CCDC54 Silent p.T47T 0.15 TCGA-50-5049-01 3 113376009 113376009 T C KIAA2018 Missense_Mutation p.H1507R 0.10 probably_damaging(0.997) TCGA-50-5049-01 3 113513802 113513802 C A ATP6V1A Missense_Mutation p.L358I 0.13 deleterious(0) probably_damaging(0.967) TCGA-50-5049-01 3 115395290 115395290 C T GAP43 Missense_Mutation p.S190F 0.13 deleterious(0.04) probably_damaging(0.995) TCGA-50-5049-01 3 121341476 121341476 C A FBXO40 Silent p.L400L 0.11 TCGA-50-5049-01 3 121838371 121838371 C - CD86 Frame_Shift_Del p.T327Nfs*5 0.13 TCGA-50-5049-01 3 122287986 122287986 T A DTX3L Silent p.I350I 0.17 TCGA-50-5049-01 3 122459941 122459941 C A HSPBAP1 Missense_Mutation p.R282L 0.22 deleterious(0) probably_damaging(1) TCGA-50-5049-01 3 123419658 123419658 G C MYLK Missense_Mutation p.A886G 0.11 tolerated(0.21) benign(0.121) TCGA-50-5049-01 3 124281868 124281868 G A KALRN Missense_Mutation p.S76N 0.18 tolerated(0.32) benign(0.046) TCGA-50-5049-01 3 126220152 126220152 C A UROC1 Missense_Mutation p.A352S 0.17 tolerated(0.62) benign(0.001) TCGA-50-5049-01 3 133494456 133494456 C A TF Missense_Mutation p.Q623K 0.08 deleterious(0) probably_damaging(0.999) TCGA-50-5049-01 3 133647067 133647067 G C C3orf36 3'UTR 0.12 TCGA-50-5049-01 3 137822353 137822353 T A DZIP1L Missense_Mutation p.Q154L 0.17 deleterious(0) probably_damaging(0.954) TCGA-50-5049-01 3 139172010 139172010 T A RBP2 Splice_Site p.X119_splice 0.19 TCGA-50-5049-01 3 142523341 142523341 A G TRPC1 Missense_Mutation p.K675E 0.12 deleterious(0) possibly_damaging(0.704) TCGA-50-5049-01 3 147128031 147128031 G T ZIC1 Missense_Mutation p.M44I 0.10 tolerated(0.14) possibly_damaging(0.535) TCGA-50-5049-01 3 148857790 148857790 G T HPS3 Splice_Site p.X73_splice 0.15 TCGA-50-5049-01 3 151012145 151012145 C G GPR87 Missense_Mutation p.E297Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-50-5049-01 3 151082916 151082916 G T MED12L Missense_Mutation p.S1001I 0.09 deleterious(0.01) benign(0.244) TCGA-50-5049-01 3 151101662 151101662 C A MED12L Missense_Mutation p.D1557E 0.16 deleterious(0.03) benign(0.005) TCGA-50-5049-01 3 154147322 154147322 G T GPR149 Missense_Mutation p.P28Q 0.10 tolerated(0.41) benign(0.258) TCGA-50-5049-01 3 15457374 15457374 C A METTL6 Missense_Mutation p.V146L 0.06 tolerated(0.08) benign(0.034) TCGA-50-5049-01 3 160803765 160803765 C A B3GALNT1 Missense_Mutation p.V260L 0.09 deleterious(0.03) possibly_damaging(0.745) TCGA-50-5049-01 3 160804474 160804474 C A B3GALNT1 Silent p.L23L 0.17 TCGA-50-5049-01 3 164709192 164709192 C A SI Missense_Mutation p.R1686L 0.16 deleterious(0) probably_damaging(0.956) TCGA-50-5049-01 3 164714347 164714347 C A SI Missense_Mutation p.R1556S 0.07 deleterious(0) probably_damaging(1) TCGA-50-5049-01 3 167167116 167167116 C A SERPINI2 Missense_Mutation p.A347S 0.12 deleterious(0.01) probably_damaging(1) TCGA-50-5049-01 3 170108878 170108878 C T SKIL Nonsense_Mutation p.Q576* 0.13 TCGA-50-5049-01 3 170198682 170198682 A T SLC7A14 Silent p.A463A 0.06 TCGA-50-5049-01 3 172028669 172028669 G C FNDC3B Missense_Mutation p.E418Q 0.16 deleterious(0) possibly_damaging(0.519) TCGA-50-5049-01 3 172835231 172835231 C A SPATA16 Missense_Mutation p.Q97H 0.12 deleterious(0) benign(0) TCGA-50-5049-01 3 178546087 178546087 T A KCNMB2 Missense_Mutation p.Y117N 0.18 deleterious(0) probably_damaging(0.999) TCGA-50-5049-01 3 187416408 187416408 G T RTP2 Missense_Mutation p.P186T 0.12 deleterious(0.03) benign(0.097) TCGA-50-5049-01 3 190147509 190147509 C A TMEM207 Missense_Mutation p.A106S 0.09 tolerated(0.2) benign(0.176) TCGA-50-5049-01 3 424236 424236 C T CHL1 Silent p.T686T 0.09 TCGA-50-5049-01 3 48465380 48465380 T A PLXNB1 Missense_Mutation p.Y214F 0.17 tolerated(0.05) probably_damaging(0.998) TCGA-50-5049-01 3 48619147 48619147 C A COL7A1 Missense_Mutation p.G1572W 0.07 unknown(0) TCGA-50-5049-01 3 48637934 48637934 G A UQCRC1 Silent p.A398A 0.07 TCGA-50-5049-01 3 50103766 50103766 C T RBM6 Missense_Mutation p.P925L 0.13 tolerated(0.14) benign(0.036) TCGA-50-5049-01 3 50103767 50103767 C T RBM6 Silent p.P925P 0.12 TCGA-50-5049-01 3 50332756 50332756 C A HYAL3 Missense_Mutation p.G93V 0.17 deleterious(0) probably_damaging(1) TCGA-50-5049-01 3 87027877 87027877 C AA VGLL3 Frame_Shift_Ins p.E68Lfs*18 0.18 TCGA-50-5049-01 3 93611874 93611874 G T PROS1 Missense_Mutation p.A353E 0.13 deleterious(0.02) probably_damaging(0.996) TCGA-50-5049-01 3 93624698 93624698 A G PROS1 Silent p.N177N 0.09 TCGA-50-5049-01 3 98251619 98251619 G A GPR15 Missense_Mutation p.A248T 0.21 tolerated(0.31) benign(0.094) TCGA-50-5049-01 4 100503247 100503247 A G MTTP Missense_Mutation p.T83A 0.11 tolerated(0.68) benign(0.008) TCGA-50-5049-01 4 110909824 110909824 G C EGF Missense_Mutation p.R898P 0.18 deleterious(0.04) possibly_damaging(0.456) TCGA-50-5049-01 4 110972668 110972668 C A ELOVL6 Missense_Mutation p.M208I 0.17 tolerated(0.54) benign(0.001) TCGA-50-5049-01 4 113351864 113351864 G T ALPK1 Silent p.G387G 0.18 TCGA-50-5049-01 4 114276332 114276332 G T ANK2 Missense_Mutation p.E2186D 0.16 benign(0.036) TCGA-50-5049-01 4 122833087 122833087 C A TRPC3 Missense_Mutation p.R501S 0.09 deleterious(0.03) benign(0.065) TCGA-50-5049-01 4 126242248 126242248 G A FAT4 Missense_Mutation p.G1561E 0.09 probably_damaging(0.999) TCGA-50-5049-01 4 126355443 126355443 A T FAT4 Silent p.V2354V 0.10 TCGA-50-5049-01 4 134073228 134073228 C G PCDH10 Missense_Mutation p.P645A 0.10 tolerated(0.7) benign(0.175) TCGA-50-5049-01 4 138451556 138451556 C G PCDH18 Missense_Mutation p.V563L 0.16 tolerated(0.38) benign(0.02) TCGA-50-5049-01 4 147561855 147561855 C G POU4F2 Missense_Mutation p.I375M 0.06 deleterious(0) possibly_damaging(0.761) TCGA-50-5049-01 4 162306894 162306894 G T FSTL5 3'UTR 0.12 TCGA-50-5049-01 4 167663171 167663171 C A SPOCK3 Missense_Mutation p.R327L 0.35 tolerated(0.37) benign(0.36) TCGA-50-5049-01 4 169611826 169611826 C T PALLD Silent p.L470L 0.12 TCGA-50-5049-01 4 189060757 189060757 C A TRIML1 Silent p.T15T 0.08 TCGA-50-5049-01 4 189068316 189068316 C A TRIML1 Missense_Mutation p.H399Q 0.11 tolerated(0.1) probably_damaging(0.941) TCGA-50-5049-01 4 2238063 2238063 T A HAUS3 Silent p.A490A 0.11 TCGA-50-5049-01 4 40895341 40895341 T C APBB2 Missense_Mutation p.I448V 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-50-5049-01 4 42596337 42596337 T C ATP8A1 Intron 0.06 TCGA-50-5049-01 4 46099313 46099313 C T GABRG1 Nonsense_Mutation p.W53* 0.05 TCGA-50-5049-01 4 47427945 47427945 T A GABRB1 Missense_Mutation p.D445E 0.23 deleterious(0) probably_damaging(0.994) TCGA-50-5049-01 4 55152085 55152085 G T PDGFRA Silent p.L839L 0.07 TCGA-50-5049-01 4 55981471 55981471 T C KDR Missense_Mutation p.N156D 0.08 tolerated(1) benign(0.002) TCGA-50-5049-01 4 56837457 56837457 G C CEP135 Missense_Mutation p.E378Q 0.19 tolerated(0.1) probably_damaging(0.982) TCGA-50-5049-01 4 57181776 57181776 G A KIAA1211 Missense_Mutation p.C703Y 0.11 tolerated(0.06) possibly_damaging(0.588) TCGA-50-5049-01 4 5844865 5844865 C T CRMP1 Missense_Mutation p.M329I 0.12 tolerated(0.05) benign(0.116) TCGA-50-5049-01 4 65188442 65188442 C A TECRL Missense_Mutation p.A134S 0.07 deleterious(0) benign(0.001) TCGA-50-5049-01 4 77660267 77660267 G T SHROOM3 Missense_Mutation p.R314L 0.15 deleterious(0.01) benign(0.337) TCGA-50-5049-01 4 79460460 79460460 C T FRAS1 Missense_Mutation p.P3771S 0.09 possibly_damaging(0.905) TCGA-50-5049-01 4 85778 85778 G T Z95704.2 RNA 0.24 TCGA-50-5049-01 4 88766351 88766351 G T MEPE Missense_Mutation p.G111C 0.12 deleterious(0) probably_damaging(0.935) TCGA-50-5049-01 4 90857932 90857932 A G MMRN1 Missense_Mutation p.D1034G 0.18 deleterious(0) probably_damaging(0.929) TCGA-50-5049-01 4 94411820 94411820 C A GRID2 Missense_Mutation p.T630N 0.10 tolerated(0.08) possibly_damaging(0.781) TCGA-50-5049-01 5 112111325 112111325 G T APC Splice_Site p.X141_splice 0.14 TCGA-50-5049-01 5 115338596 115338596 G T AQPEP Missense_Mutation p.D629Y 0.13 deleterious(0) possibly_damaging(0.907) TCGA-50-5049-01 5 1213663 1213663 G T SLC6A19 Missense_Mutation p.G250V 0.23 deleterious(0) possibly_damaging(0.571) TCGA-50-5049-01 5 126667014 126667014 T G MEGF10 Missense_Mutation p.L5W 0.14 tolerated(0.06) benign(0) TCGA-50-5049-01 5 13824389 13824389 T C DNAH5 Silent p.G2166G 0.09 TCGA-50-5049-01 5 13894882 13894882 T C DNAH5 Missense_Mutation p.I770V 0.10 benign(0.011) TCGA-50-5049-01 5 139231259 139231259 G T NRG2 Silent p.R568R 0.21 TCGA-50-5049-01 5 140209049 140209049 C A PCDHA6 Missense_Mutation p.P458H 0.17 deleterious_low_confidence(0) benign(0.193) TCGA-50-5049-01 5 140229634 140229634 C A PCDHA9 Nonsense_Mutation p.Y518* 0.14 TCGA-50-5049-01 5 140263618 140263618 C T PCDHA13 Missense_Mutation p.H589Y 0.07 deleterious_low_confidence(0.03) benign(0.05) TCGA-50-5049-01 5 140482259 140482259 G T PCDHB3 Missense_Mutation p.A676S 0.07 tolerated_low_confidence(0.1) benign(0.02) TCGA-50-5049-01 5 140502098 140502098 C A PCDHB4 Missense_Mutation p.P173H 0.16 deleterious_low_confidence(0.01) benign(0.144) TCGA-50-5049-01 5 140559505 140559505 G A PCDHB8 Silent p.L630L 0.13 TCGA-50-5049-01 5 140580808 140580808 C G PCDHB11 Missense_Mutation p.N487K 0.11 deleterious_low_confidence(0) benign(0.063) TCGA-50-5049-01 5 140581670 140581670 C A PCDHB11 Missense_Mutation p.Q775K 0.11 tolerated_low_confidence(0.36) benign(0.001) TCGA-50-5049-01 5 140711649 140711649 C T PCDHGA1 Silent p.P466P 0.06 TCGA-50-5049-01 5 140736259 140736259 G C PCDHGA4 Missense_Mutation p.G498R 0.14 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-50-5049-01 5 140736260 140736260 G T PCDHGA4 Missense_Mutation p.G498V 0.15 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-50-5049-01 5 140744467 140744467 G T PCDHGA5 Missense_Mutation p.K190N 0.17 deleterious_low_confidence(0.01) benign(0.208) TCGA-50-5049-01 5 140774114 140774114 G T PCDHGA8 Silent p.A578A 0.16 TCGA-50-5049-01 5 146236146 146236146 C A PPP2R2B Intron 0.10 TCGA-50-5049-01 5 147806775 147806775 G C FBXO38 Splice_Site p.X640_splice 0.14 TCGA-50-5049-01 5 150925237 150925237 G - FAT2 Frame_Shift_Del p.S1818Afs*5 0.17 TCGA-50-5049-01 5 15500671 15500671 G T FBXL7 5'UTR 0.08 TCGA-50-5049-01 5 15500672 15500672 G T FBXL7 5'UTR 0.11 TCGA-50-5049-01 5 156608057 156608057 C T ITK Silent p.P23P 0.07 TCGA-50-5049-01 5 156915444 156915444 G T ADAM19 Silent p.P793P 0.14 TCGA-50-5049-01 5 156997941 156997941 G A ADAM19 Missense_Mutation p.P48S 0.14 deleterious(0.02) possibly_damaging(0.728) TCGA-50-5049-01 5 161324315 161324315 G T GABRA1 Missense_Mutation p.D420Y 0.07 deleterious(0) probably_damaging(0.998) TCGA-50-5049-01 5 163417 163417 A G PLEKHG4B Missense_Mutation p.K721R 0.12 tolerated(0.26) probably_damaging(0.93) TCGA-50-5049-01 5 16458721 16458721 T A ZNF622 Missense_Mutation p.H356L 0.06 tolerated(0.3) benign(0.097) TCGA-50-5049-01 5 168114017 168114017 T A SLIT3 Missense_Mutation p.N1094I 0.17 deleterious(0.03) probably_damaging(0.962) TCGA-50-5049-01 5 168135007 168135007 G A SLIT3 Missense_Mutation p.R940C 0.17 deleterious(0) possibly_damaging(0.591) TCGA-50-5049-01 5 169116287 169116287 G T DOCK2 Missense_Mutation p.G265C 0.10 deleterious(0) probably_damaging(0.999) TCGA-50-5049-01 5 17275906 17275906 G T BASP1 Missense_Mutation p.S194I 0.21 deleterious(0) probably_damaging(0.99) TCGA-50-5049-01 5 175763870 175763870 C G SIMC1 Silent p.L339L 0.24 TCGA-50-5049-01 5 176314464 176314464 G T HK3 Missense_Mutation p.P530T 0.13 deleterious(0) probably_damaging(0.978) TCGA-50-5049-01 5 176489059 176489059 C T ZNF346 Missense_Mutation p.A235V 0.05 tolerated(0.1) benign(0.285) TCGA-50-5049-01 5 176940389 176940389 C A DDX41 Missense_Mutation p.G399W 0.17 deleterious(0) probably_damaging(1) TCGA-50-5049-01 5 178505705 178505705 C G ZNF354C Missense_Mutation p.T91R 0.12 tolerated(0.22) benign(0.047) TCGA-50-5049-01 5 21752217 21752217 C G CDH12 Missense_Mutation p.A672P 0.06 deleterious(0.01) probably_damaging(1) TCGA-50-5049-01 5 23509603 23509603 T A PRDM9 Missense_Mutation p.S32T 0.20 deleterious_low_confidence(0) benign(0.13) TCGA-50-5049-01 5 240507 240507 G T SDHA Silent p.G489G 0.18 TCGA-50-5049-01 5 24487989 24487989 C A CDH10 Missense_Mutation p.R717M 0.13 deleterious(0) probably_damaging(0.99) TCGA-50-5049-01 5 24537496 24537497 AG - CDH10 Frame_Shift_Del p.S173Cfs*16 0.09 TCGA-50-5049-01 5 33527362 33527362 G C ADAMTS12 Silent p.P1572P 0.19 TCGA-50-5049-01 5 33984644 33984644 G T SLC45A2 Silent p.S15S 0.12 TCGA-50-5049-01 5 34909397 34909397 C T RAD1 Missense_Mutation p.E211K 0.09 deleterious(0) probably_damaging(0.997) TCGA-50-5049-01 5 35644577 35644577 G T SPEF2 Nonsense_Mutation p.E179* 0.13 TCGA-50-5049-01 5 36037999 36037999 C A UGT3A2 Missense_Mutation p.V399F 0.13 tolerated(0.06) benign(0.012) TCGA-50-5049-01 5 36608588 36608588 A T SLC1A3 Silent p.G21G 0.19 TCGA-50-5049-01 5 39203004 39203004 G T FYB Missense_Mutation p.P30H 0.14 deleterious(0) probably_damaging(0.999) TCGA-50-5049-01 5 434078 434078 G T AHRR Missense_Mutation p.S430I 0.10 tolerated(0.1) benign(0.118) TCGA-50-5049-01 5 5319161 5319161 C A ADAMTS16 Missense_Mutation p.H1195Q 0.19 tolerated(0.39) benign(0.158) TCGA-50-5049-01 5 54960597 54960597 C A SLC38A9 Silent p.V207V 0.18 TCGA-50-5049-01 5 66460666 66460666 C T MAST4 Missense_Mutation p.P1887S 0.18 benign(0.031) TCGA-50-5049-01 5 82815784 82815784 A T VCAN Silent p.G553G 0.08 TCGA-50-5049-01 6 10989959 10989959 G T ELOVL2 Missense_Mutation p.L248I 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-50-5049-01 6 110714247 110714247 C A DDO Nonsense_Mutation p.E281* 0.11 TCGA-50-5049-01 6 117825053 117825053 G T DCBLD1 Missense_Mutation p.R79I 0.22 deleterious(0) possibly_damaging(0.506) TCGA-50-5049-01 6 12123583 12123583 C T HIVEP1 Silent p.H1185H 0.22 TCGA-50-5049-01 6 130372452 130372452 G T L3MBTL3 Silent p.G116G 0.09 TCGA-50-5049-01 6 130465706 130465706 C A SAMD3 Nonsense_Mutation p.E508* 0.12 TCGA-50-5049-01 6 133044236 133044236 G T VNN3 Intron 0.33 TCGA-50-5049-01 6 139695015 139695015 G A CITED2 Missense_Mutation p.H23Y 0.14 tolerated_low_confidence(0.36) benign(0.01) TCGA-50-5049-01 6 139695043 139695043 G A CITED2 Silent p.F13F 0.13 TCGA-50-5049-01 6 144416503 144416503 C A SF3B5 Missense_Mutation p.M44I 0.08 tolerated(0.96) benign(0.002) TCGA-50-5049-01 6 146126130 146126130 C G FBXO30 Missense_Mutation p.S471T 0.11 deleterious(0.02) benign(0.027) TCGA-50-5049-01 6 146720217 146720217 G T GRM1 Missense_Mutation p.R681L 0.18 deleterious(0) probably_damaging(1) TCGA-50-5049-01 6 147646094 147646094 G T STXBP5 Splice_Site p.X601_splice 0.07 TCGA-50-5049-01 6 151247379 151247379 G T MTHFD1L Missense_Mutation p.V402L 0.07 tolerated(0.71) benign(0.01) TCGA-50-5049-01 6 152720814 152720814 C A SYNE1 Missense_Mutation p.V2392L 0.16 benign(0.037) TCGA-50-5049-01 6 155728350 155728350 G T NOX3 Missense_Mutation p.D498E 0.12 deleterious(0) probably_damaging(1) TCGA-50-5049-01 6 160480035 160480035 G T IGF2R Missense_Mutation p.W999L 0.09 tolerated(1) benign(0) TCGA-50-5049-01 6 165801923 165801923 G T PDE10A Missense_Mutation p.A559E 0.11 deleterious(0) probably_damaging(0.999) TCGA-50-5049-01 6 167753613 167753613 G A TTLL2 Silent p.A75A 0.16 TCGA-50-5049-01 6 1742766 1742766 C A GMDS Missense_Mutation p.G276W 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-50-5049-01 6 18208362 18208362 G T KDM1B Splice_Site p.X366_splice 0.18 TCGA-50-5049-01 6 25862555 25862555 G A SLC17A3 Missense_Mutation p.T70I 0.20 deleterious(0) probably_damaging(0.986) TCGA-50-5049-01 6 26502093 26502093 G T BTN1A1 Missense_Mutation p.D119Y 0.17 deleterious(0) probably_damaging(0.983) TCGA-50-5049-01 6 29323886 29323886 G T OR5V1 Silent p.T29T 0.11 TCGA-50-5049-01 6 29395248 29395248 G T OR11A1 Silent p.L57L 0.23 TCGA-50-5049-01 6 30041008 30041008 G A RNF39 Missense_Mutation p.S203F 0.09 deleterious(0) benign(0.243) TCGA-50-5049-01 6 32181560 32181560 C G NOTCH4 Missense_Mutation p.G742A 0.12 tolerated(0.67) probably_damaging(0.999) TCGA-50-5049-01 6 32188027 32188027 G T NOTCH4 Missense_Mutation p.S398R 0.26 deleterious(0) benign(0.033) TCGA-50-5049-01 6 32827219 32827219 G C PSMB9 Silent p.G190G 0.19 TCGA-50-5049-01 6 33283189 33283189 C G ZBTB22 Missense_Mutation p.R502P 0.10 deleterious(0.01) probably_damaging(1) TCGA-50-5049-01 6 348191 348191 G T DUSP22 Missense_Mutation p.V118L 0.05 deleterious(0.04) probably_damaging(0.999) TCGA-50-5049-01 6 35088395 35088395 C T TCP11 Silent p.L261L 0.19 TCGA-50-5049-01 6 41117386 41117386 C A TREML1 Missense_Mutation p.G298W 0.07 deleterious(0) possibly_damaging(0.841) TCGA-50-5049-01 6 42016394 42016394 G T TAF8 5'Flank 0.21 TCGA-50-5049-01 6 50718983 50718983 C A TFAP2D Missense_Mutation p.S362Y 0.19 deleterious(0.04) probably_damaging(0.968) TCGA-50-5049-01 6 50803869 50803869 G T TFAP2B Missense_Mutation p.V233F 0.18 deleterious(0.01) possibly_damaging(0.604) TCGA-50-5049-01 6 54095697 54095697 T A MLIP Missense_Mutation p.S433R 0.21 tolerated(0.12) probably_damaging(0.999) TCGA-50-5049-01 6 54245364 54245364 T - TINAG Frame_Shift_Del p.W432Gfs*23 0.17 TCGA-50-5049-01 6 54805949 54805949 G T FAM83B Missense_Mutation p.R727I 0.30 tolerated(0.32) benign(0.003) TCGA-50-5049-01 6 6588981 6588981 C A LY86 Missense_Mutation p.T5K 0.07 tolerated(0.43) benign(0.153) TCGA-50-5049-01 6 78172306 78172306 G T HTR1B Nonsense_Mutation p.S272* 0.09 TCGA-50-5049-01 6 94120573 94120573 G T EPHA7 Missense_Mutation p.L160I 0.06 tolerated(0.12) probably_damaging(0.999) TCGA-50-5049-01 7 100086049 100086049 T C NYAP1 Silent p.A235A 0.22 TCGA-50-5049-01 7 100352909 100352909 C A ZAN Missense_Mutation p.P1062H 0.06 unknown(0) TCGA-50-5049-01 7 100551873 100551873 A T MUC3A Silent p.T208T 0.06 TCGA-50-5049-01 7 100677732 100677732 C A MUC17 Missense_Mutation p.T1012N 0.07 probably_damaging(0.976) TCGA-50-5049-01 7 100684017 100684017 T A MUC17 Nonsense_Mutation p.L3107* 0.14 TCGA-50-5049-01 7 100850973 100850973 C A PLOD3 Silent p.V607V 0.11 TCGA-50-5049-01 7 102825936 102825936 G C DPY19L2P2 RNA 0.28 TCGA-50-5049-01 7 103244895 103244895 T A RELN Missense_Mutation p.Y1015F 0.11 tolerated(0.4) possibly_damaging(0.826) TCGA-50-5049-01 7 106508290 106508290 A T PIK3CG Missense_Mutation p.H95L 0.20 tolerated(0.11) benign(0.013) TCGA-50-5049-01 7 107580556 107580556 G T LAMB1 Silent p.I1213I 0.11 TCGA-50-5049-01 7 115580691 115580691 G T TFEC Missense_Mutation p.P320T 0.15 deleterious(0) probably_damaging(1) TCGA-50-5049-01 7 116869863 116869863 G T ST7 Nonsense_Mutation p.G462* 0.17 TCGA-50-5049-01 7 117067454 117067454 C T ASZ1 Missense_Mutation p.E21K 0.08 tolerated(0.09) benign(0.185) TCGA-50-5049-01 7 121612652 121612652 T A PTPRZ1 Missense_Mutation p.F121Y 0.15 tolerated(0.13) probably_damaging(0.998) TCGA-50-5049-01 7 121650794 121650794 T C PTPRZ1 Missense_Mutation p.I565T 0.09 tolerated_low_confidence(0.99) benign(0.002) TCGA-50-5049-01 7 128492994 128492994 G A FLNC Silent p.G2039G 0.07 TCGA-50-5049-01 7 128498531 128498531 G T FLNC Missense_Mutation p.G2711V 0.12 deleterious(0) probably_damaging(1) TCGA-50-5049-01 7 130023602 130023602 C G CPA1 Silent p.T221T 0.10 TCGA-50-5049-01 7 134632491 134632491 G C CALD1 Missense_Mutation p.E589Q 0.23 tolerated(0.06) unknown(0) TCGA-50-5049-01 7 135290944 135290944 G T NUP205 Missense_Mutation p.D959Y 0.09 deleterious(0) benign(0.213) TCGA-50-5049-01 7 141673490 141673490 G A TAS2R38 5'UTR 0.14 TCGA-50-5049-01 7 142045769 142045769 C A TRBV4-2 Silent p.T99T 0.08 TCGA-50-5049-01 7 142111523 142111523 T C TRBV5-7 Silent p.K71K 0.12 TCGA-50-5049-01 7 143016969 143016969 G C CLCN1 Splice_Site p.X101_splice 0.22 TCGA-50-5049-01 7 143632643 143632644 CT G OR2F2 Frame_Shift_Del p.L107Wfs*11 0.15 TCGA-50-5049-01 7 144245644 144245644 G T TPK1 Missense_Mutation p.L185I 0.16 deleterious(0) probably_damaging(1) TCGA-50-5049-01 7 14613905 14613905 T C DGKB Missense_Mutation p.N569D 0.16 tolerated(0.8) benign(0.001) TCGA-50-5049-01 7 148802424 148802424 C A ZNF425 Missense_Mutation p.R180L 0.07 tolerated(0.28) benign(0.001) TCGA-50-5049-01 7 148802491 148802491 C A ZNF425 Missense_Mutation p.V158F 0.07 tolerated(0.07) benign(0.002) TCGA-50-5049-01 7 150167962 150167962 G C GIMAP8 Missense_Mutation p.G228R 0.10 deleterious(0.05) possibly_damaging(0.52) TCGA-50-5049-01 7 150440086 150440087 - A GIMAP5 Frame_Shift_Ins p.V287Dfs*31 0.12 TCGA-50-5049-01 7 150731593 150731593 G T ABCB8 Missense_Mutation p.G189V 0.11 deleterious(0) probably_damaging(0.922) TCGA-50-5049-01 7 150752434 150752434 C A CDK5 Silent p.P170P 0.07 TCGA-50-5049-01 7 151904477 151904477 G T KMT2C Missense_Mutation p.S1250Y 0.13 probably_damaging(0.968) TCGA-50-5049-01 7 156963050 156963050 G C UBE3C Missense_Mutation p.G83A 0.17 tolerated(0.82) benign(0.066) TCGA-50-5049-01 7 16502099 16502099 G T SOSTDC1 3'UTR 0.26 TCGA-50-5049-01 7 18869149 18869149 G - HDAC9 Frame_Shift_Del p.S815Tfs*4 0.11 TCGA-50-5049-01 7 20738036 20738036 C A ABCB5 Missense_Mutation p.L673I 0.12 tolerated(0.47) benign(0.089) TCGA-50-5049-01 7 20793064 20793064 C A ABCB5 Missense_Mutation p.L1171I 0.12 tolerated(0.67) benign(0.076) TCGA-50-5049-01 7 22985289 22985289 T A FAM126A Silent p.S495S 0.20 TCGA-50-5049-01 7 29070193 29070193 C G CPVL Missense_Mutation p.Q440H 0.09 deleterious(0) probably_damaging(0.999) TCGA-50-5049-01 7 31913022 31913022 C A PDE1C Splice_Site p.X225_splice 0.21 TCGA-50-5049-01 7 32209517 32209517 C A PDE1C Missense_Mutation p.G63V 0.14 tolerated_low_confidence(0.17) benign(0.296) TCGA-50-5049-01 7 36463494 36463494 G C ANLN Missense_Mutation p.A849P 0.16 deleterious(0) probably_damaging(0.998) TCGA-50-5049-01 7 37890007 37890007 G A NME8 Missense_Mutation p.D21N 0.18 deleterious(0.02) possibly_damaging(0.822) TCGA-50-5049-01 7 38530667 38530667 G C AMPH Missense_Mutation p.Q127E 0.13 deleterious(0) possibly_damaging(0.728) TCGA-50-5049-01 7 42005086 42005086 G A GLI3 Silent p.N1195N 0.07 TCGA-50-5049-01 7 44046939 44046939 G A SPDYE1 Silent p.K235K 0.12 TCGA-50-5049-01 7 44801092 44801092 G T ZMIZ2 Missense_Mutation p.D429Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-50-5049-01 7 48068523 48068523 T A SUN3 Missense_Mutation p.T5S 0.21 tolerated_low_confidence(0.72) benign(0.006) TCGA-50-5049-01 7 48258959 48258959 G T ABCA13 Missense_Mutation p.R99M 0.11 possibly_damaging(0.846) TCGA-50-5049-01 7 53103455 53103455 G T POM121L12 Missense_Mutation p.A31S 0.16 tolerated(0.11) possibly_damaging(0.866) TCGA-50-5049-01 7 6089666 6089666 C G EIF2AK1 Missense_Mutation p.Q96H 0.12 tolerated(0.07) benign(0.033) TCGA-50-5049-01 7 81334734 81334734 G T HGF Missense_Mutation p.A661D 0.09 tolerated(0.09) benign(0.32) TCGA-50-5049-01 7 81334976 81334976 C A HGF Missense_Mutation p.W617C 0.06 deleterious(0.02) probably_damaging(1) TCGA-50-5049-01 7 81588610 81588610 C A CACNA2D1 Missense_Mutation p.C1047F 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-50-5049-01 7 81589101 81589101 A G CACNA2D1 Missense_Mutation p.I1004T 0.14 deleterious(0) probably_damaging(0.951) TCGA-50-5049-01 7 82387850 82387850 C A PCLO 3'UTR 0.19 TCGA-50-5049-01 7 82544780 82544780 T - PCLO Frame_Shift_Del p.A4175Qfs*21 0.15 TCGA-50-5049-01 7 91687664 91687664 A G AKAP9 Intron 0.20 TCGA-50-5049-01 7 92838067 92838067 A T HEPACAM2 Missense_Mutation p.Y280N 0.25 deleterious(0) probably_damaging(0.995) TCGA-50-5049-01 8 100832257 100832257 C A VPS13B Silent p.I2992I 0.05 TCGA-50-5049-01 8 104066159 104066159 A T ATP6V1C1 Missense_Mutation p.D174V 0.08 deleterious(0) possibly_damaging(0.583) TCGA-50-5049-01 8 10468702 10468702 A T RP1L1 Missense_Mutation p.I969K 0.10 benign(0.094) TCGA-50-5049-01 8 104987593 104987593 G A RIMS2 Missense_Mutation p.G929D 0.12 deleterious_low_confidence(0.02) benign(0.065) TCGA-50-5049-01 8 105263260 105263260 G T RIMS2 Missense_Mutation p.V1234L 0.10 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-50-5049-01 8 105263899 105263899 G T RIMS2 Missense_Mutation p.D1301Y 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-50-5049-01 8 105368458 105368458 C A DCSTAMP 3'UTR 0.16 TCGA-50-5049-01 8 105503207 105503207 T C LRP12 Silent p.R758R 0.07 TCGA-50-5049-01 8 107691480 107691480 G A OXR1 Missense_Mutation p.R89Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-50-5049-01 8 109094816 109094816 A T RSPO2 Missense_Mutation p.D17E 0.20 tolerated(0.67) benign(0.001) TCGA-50-5049-01 8 110477060 110477060 G T PKHD1L1 Missense_Mutation p.A2667S 0.10 tolerated(0.06) probably_damaging(0.992) TCGA-50-5049-01 8 116427108 116427108 G T TRPS1 Missense_Mutation p.P1010T 0.08 tolerated_low_confidence(1) benign(0.248) TCGA-50-5049-01 8 117868937 117868937 C G RAD21 Missense_Mutation p.M254I 0.10 tolerated(0.38) benign(0.021) TCGA-50-5049-01 8 121222052 121222052 G A COL14A1 Missense_Mutation p.R460Q 0.06 tolerated(0.1) benign(0.407) TCGA-50-5049-01 8 125022845 125022846 - T FER1L6 Frame_Shift_Ins p.L572Ffs*4 0.27 TCGA-50-5049-01 8 132991151 132991151 G T EFR3A Missense_Mutation p.D462Y 0.15 deleterious(0) possibly_damaging(0.824) TCGA-50-5049-01 8 133807005 133807005 G C PHF20L1 Silent p.L94L 0.15 TCGA-50-5049-01 8 133829707 133829707 G T PHF20L1 Missense_Mutation p.R499M 0.20 tolerated(0.06) possibly_damaging(0.779) TCGA-50-5049-01 8 133931682 133931682 C A TG Missense_Mutation p.F1480L 0.13 tolerated(0.07) possibly_damaging(0.527) TCGA-50-5049-01 8 141461087 141461087 C A TRAPPC9 Missense_Mutation p.R227L 0.11 deleterious(0.02) probably_damaging(0.986) TCGA-50-5049-01 8 30702509 30702509 A T TEX15 Missense_Mutation p.V1342E 0.13 deleterious(0.01) possibly_damaging(0.663) TCGA-50-5049-01 8 30702944 30702944 G T TEX15 Missense_Mutation p.S1197Y 0.12 deleterious(0) probably_damaging(0.991) TCGA-50-5049-01 8 32621438 32621438 G T NRG1 Missense_Mutation p.V486L 0.14 tolerated(0.7) probably_damaging(0.948) TCGA-50-5049-01 8 37633506 37633506 T A PROSC Missense_Mutation p.M223K 0.09 deleterious(0) probably_damaging(0.999) TCGA-50-5049-01 8 38913229 38913229 C A ADAM9 Missense_Mutation p.A510D 0.08 tolerated(0.06) probably_damaging(1) TCGA-50-5049-01 8 41836297 41836297 T A KAT6A Splice_Site p.X303_splice 0.08 TCGA-50-5049-01 8 42611334 42611334 T A CHRNA6 Silent p.T336T 0.12 TCGA-50-5049-01 8 52320839 52320839 G C PXDNL Silent p.S1115S 0.06 TCGA-50-5049-01 8 55542651 55542651 A G RP1 Missense_Mutation p.N2070S 0.17 deleterious(0.03) possibly_damaging(0.637) TCGA-50-5049-01 8 66517566 66517566 C A ARMC1 Missense_Mutation p.A197S 0.22 tolerated(0.07) benign(0.084) TCGA-50-5049-01 8 67361160 67361160 A T ADHFE1 Missense_Mutation p.H230L 0.13 deleterious(0.02) benign(0.102) TCGA-50-5049-01 8 72754953 72754953 C A MSC Silent p.P188P 0.09 TCGA-50-5049-01 8 72951252 72951253 CA G TRPA1 Frame_Shift_Del p.G715Dfs*6 0.10 TCGA-50-5049-01 8 77764403 77764403 G C ZFHX4 Missense_Mutation p.S1749T 0.17 benign(0.294) TCGA-50-5049-01 8 77766690 77766690 C A ZFHX4 Missense_Mutation p.H2511Q 0.05 probably_damaging(0.962) TCGA-50-5049-01 8 77766734 77766734 C G ZFHX4 Missense_Mutation p.S2526C 0.05 probably_damaging(0.964) TCGA-50-5049-01 8 77767190 77767190 C A ZFHX4 Missense_Mutation p.P2678Q 0.15 probably_damaging(0.999) TCGA-50-5049-01 8 77895426 77895426 T C PEX2 3'UTR 0.17 TCGA-50-5049-01 8 86158015 86158015 G T CA13 5'UTR 0.07 TCGA-50-5049-01 8 86354332 86354332 A T CA3 Missense_Mutation p.Y88F 0.18 deleterious(0.03) possibly_damaging(0.798) TCGA-50-5049-01 8 89053647 89053647 C T MMP16 3'UTR 0.12 TCGA-50-5049-01 8 89128926 89128926 G T MMP16 Missense_Mutation p.P298Q 0.11 tolerated(1) benign(0.001) TCGA-50-5049-01 8 91963393 91963393 T C NECAB1 Silent p.L331L 0.12 TCGA-50-5049-01 8 94767133 94767133 C A TMEM67 5'UTR 0.16 TCGA-50-5049-01 8 95189829 95189829 T A CDH17 Missense_Mutation p.T91S 0.06 tolerated(0.12) benign(0.084) TCGA-50-5049-01 8 95524282 95524282 G C KIAA1429 Silent p.G929G 0.15 TCGA-50-5049-01 8 96281405 96281405 G T C8orf37 Missense_Mutation p.L5M 0.04 deleterious(0) probably_damaging(0.999) TCGA-50-5049-01 8 99129331 99129331 G C HRSP12 5'UTR 0.14 TCGA-50-5049-01 9 104170866 104170866 A G ZNF189 Silent p.K272K 0.14 TCGA-50-5049-01 9 120474985 120474985 A C TLR4 Silent p.T193T 0.14 TCGA-50-5049-01 9 120475619 120475619 G A TLR4 Missense_Mutation p.D405N 0.18 tolerated(1) benign(0.282) TCGA-50-5049-01 9 125315694 125315694 C A OR1N2 Missense_Mutation p.N82K 0.08 deleterious(0) benign(0.255) TCGA-50-5049-01 9 125390883 125390883 A T OR1B1 Missense_Mutation p.L311H 0.14 deleterious(0) benign(0.018) TCGA-50-5049-01 9 131369914 131369914 G T SPTAN1 Missense_Mutation p.G1360W 0.10 deleterious(0) probably_damaging(0.99) TCGA-50-5049-01 9 131847036 131847036 G T DOLPP1 Nonsense_Mutation p.E56* 0.04 TCGA-50-5049-01 9 134165627 134165627 C A PPAPDC3 Silent p.A81A 0.11 TCGA-50-5049-01 9 135357749 135357749 C A C9orf171 Missense_Mutation p.A83E 0.14 tolerated_low_confidence(0.18) benign(0.001) TCGA-50-5049-01 9 135464640 135464640 G A BARHL1 Missense_Mutation p.V239I 0.16 deleterious(0.03) benign(0.04) TCGA-50-5049-01 9 136198959 136198959 C A SURF6 Nonsense_Mutation p.E278* 0.19 TCGA-50-5049-01 9 18928669 18928669 C A FAM154A Missense_Mutation p.C269F 0.12 tolerated(0.13) benign(0.008) TCGA-50-5049-01 9 19056230 19056230 C G HAUS6 3'UTR 0.29 TCGA-50-5049-01 9 20414102 20414102 C T MLLT3 Missense_Mutation p.V248I 0.09 tolerated(0.4) probably_damaging(0.956) TCGA-50-5049-01 9 20820325 20820325 G T FOCAD Silent p.V521V 0.20 TCGA-50-5049-01 9 21350457 21350457 T C IFNA6 Missense_Mutation p.R144G 0.05 deleterious(0.02) probably_damaging(0.944) TCGA-50-5049-01 9 3247999 3247999 C A RFX3 Intron 0.07 TCGA-50-5049-01 9 3257050 3257050 T A RFX3 Missense_Mutation p.E585D 0.16 deleterious(0.04) benign(0.049) TCGA-50-5049-01 9 32633177 32633177 C A TAF1L Missense_Mutation p.V801F 0.21 deleterious(0) probably_damaging(0.996) TCGA-50-5049-01 9 32633178 32633178 C A TAF1L Silent p.V800V 0.23 TCGA-50-5049-01 9 32633194 32633194 A G TAF1L Missense_Mutation p.L795S 0.21 deleterious(0) possibly_damaging(0.613) TCGA-50-5049-01 9 35074929 35074929 C A FANCG Missense_Mutation p.C544F 0.21 deleterious(0.02) possibly_damaging(0.729) TCGA-50-5049-01 9 36966657 36966657 C A PAX5 Missense_Mutation p.Q223H 0.07 tolerated(0.89) benign(0.039) TCGA-50-5049-01 9 43627193 43627193 A T SPATA31A6 Missense_Mutation p.H498Q 0.07 deleterious(0.04) possibly_damaging(0.691) TCGA-50-5049-01 9 5339747 5339747 C T RLN1 5'UTR 0.12 TCGA-50-5049-01 9 6328535 6328535 C T TPD52L3 5'UTR 0.09 TCGA-50-5049-01 9 6984176 6984176 G T KDM4C Missense_Mutation p.A376S 0.08 tolerated(1) benign(0.001) TCGA-50-5049-01 9 77275592 77275592 G T RORB Nonsense_Mutation p.E233* 0.07 TCGA-50-5049-01 9 77397635 77397635 G T TRPM6 Nonsense_Mutation p.Y1018* 0.13 TCGA-50-5049-01 9 84532474 84532474 G T SPATA31D5P RNA 0.11 TCGA-50-5049-01 9 84609145 84609145 G A SPATA31D1 Missense_Mutation p.V1254M 0.24 deleterious(0) probably_damaging(0.999) TCGA-50-5049-01 9 847037 847037 G C DMRT1 Missense_Mutation p.E144D 0.08 tolerated(0.25) benign(0.042) TCGA-50-5049-01 9 8528611 8528611 C A PTPRD Missense_Mutation p.R174L 0.08 deleterious(0.03) probably_damaging(0.997) TCGA-50-5049-01 9 91943769 91943769 G C SECISBP2 Missense_Mutation p.E257Q 0.11 tolerated(0.27) benign(0.128) TCGA-50-5049-01 9 94821469 94821469 C T SPTLC1 Missense_Mutation p.D228N 0.17 deleterious(0.03) possibly_damaging(0.828) TCGA-50-5049-01 9 95099903 95099903 G T CENPP Nonsense_Mutation p.E124* 0.21 TCGA-50-5049-01 9 97062215 97062215 A T ZNF169 Silent p.A125A 0.11 TCGA-50-5049-01 X 101138771 101138771 C A ZMAT1 Missense_Mutation p.R543L 0.14 deleterious(0) possibly_damaging(0.64) TCGA-50-5049-01 X 102508698 102508698 C G TCEAL8 Missense_Mutation p.L70F 0.18 tolerated(0.38) probably_damaging(0.972) TCGA-50-5049-01 X 103041621 103041621 A G PLP1 Missense_Mutation p.H140R 0.11 tolerated(0.8) benign(0) TCGA-50-5049-01 X 107315961 107315961 C A VSIG1 Missense_Mutation p.T192N 0.14 tolerated(0.22) benign(0.281) TCGA-50-5049-01 X 108631743 108631743 G T GUCY2F Silent p.V977V 0.20 TCGA-50-5049-01 X 110494471 110494471 G C CAPN6 Missense_Mutation p.L313V 0.12 tolerated(0.06) possibly_damaging(0.874) TCGA-50-5049-01 X 111155830 111155830 G A TRPC5 Silent p.L197L 0.24 TCGA-50-5049-01 X 114141823 114141823 G T HTR2C Missense_Mutation p.G408W 0.15 deleterious(0.02) probably_damaging(0.981) TCGA-50-5049-01 X 12905856 12905856 A T TLR7 Silent p.L743L 0.11 TCGA-50-5049-01 X 129147031 129147031 C T BCORL1 Missense_Mutation p.P95S 0.12 unknown(0) TCGA-50-5049-01 X 12940186 12940186 G A TLR8 Silent p.K1009K 0.16 TCGA-50-5049-01 X 130219600 130219600 C A ARHGAP36 Missense_Mutation p.L332M 0.11 deleterious(0) probably_damaging(0.999) TCGA-50-5049-01 X 135098852 135098852 A G SLC9A6 Missense_Mutation p.M429V 0.12 deleterious(0) probably_damaging(0.981) TCGA-50-5049-01 X 135405537 135405537 G T GPR112 Missense_Mutation p.R224M 0.14 tolerated(0.22) possibly_damaging(0.635) TCGA-50-5049-01 X 135431491 135431491 C T GPR112 Nonsense_Mutation p.Q1876* 0.15 TCGA-50-5049-01 X 13641992 13641992 G T EGFL6 Missense_Mutation p.W412C 0.12 deleterious(0) probably_damaging(1) TCGA-50-5049-01 X 140983191 140983191 A T MAGEC3 Missense_Mutation p.Q349L 0.20 deleterious(0.01) benign(0.069) TCGA-50-5049-01 X 140983192 140983192 A T MAGEC3 Missense_Mutation p.Q349H 0.20 deleterious(0) benign(0.216) TCGA-50-5049-01 X 144337404 144337404 C A SPANXN1 3'UTR 0.24 TCGA-50-5049-01 X 14625379 14625379 A G GLRA2 Missense_Mutation p.H235R 0.15 tolerated(0.08) possibly_damaging(0.876) TCGA-50-5049-01 X 153070179 153070179 G T PDZD4 Silent p.R313R 0.24 TCGA-50-5049-01 X 1748721 1748721 G T ASMT Missense_Mutation p.G151C 0.11 deleterious(0.01) possibly_damaging(0.879) TCGA-50-5049-01 X 20156717 20156717 T A EIF1AX Missense_Mutation p.R14W 0.17 deleterious(0) unknown(0) TCGA-50-5049-01 X 2407023 2407023 C A ZBED1 Missense_Mutation p.V580L 0.10 tolerated(0.26) benign(0.015) TCGA-50-5049-01 X 3239784 3239784 T A MXRA5 Silent p.P1314P 0.22 TCGA-50-5049-01 X 32862918 32862918 C A DMD Silent p.R82R 0.20 TCGA-50-5049-01 X 37027104 37027104 G T FAM47C Silent p.V207V 0.11 TCGA-50-5049-01 X 37312649 37312649 G T PRRG1 Missense_Mutation p.L144F 0.33 tolerated(0.22) benign(0.203) TCGA-50-5049-01 X 41333679 41333679 G T NYX Missense_Mutation p.G325C 0.17 deleterious(0.02) possibly_damaging(0.8) TCGA-50-5049-01 X 50094330 50094330 T C CCNB3 Missense_Mutation p.Y1351H 0.09 tolerated(0.05) benign(0.166) TCGA-50-5049-01 X 65253608 65253608 G T VSIG4 Silent p.P40P 0.23 TCGA-50-5049-01 X 69623846 69623846 G T KIF4A Missense_Mutation p.A918S 0.33 tolerated(0.79) benign(0.001) TCGA-50-5049-01 X 73961230 73961230 A T KIAA2022 Missense_Mutation p.D1054E 0.09 deleterious(0) probably_damaging(0.999) TCGA-50-5049-01 X 89177796 89177796 G T TGIF2LX Nonsense_Mutation p.E238* 0.14 TCGA-50-5049-01 X 91134011 91134011 A T PCDH11X Silent p.T924T 0.28 TCGA-50-5051-01 10 103310589 103310589 C T BTRC Missense_Mutation p.S597F 0.34 deleterious_low_confidence(0) benign(0.03) TCGA-50-5051-01 10 103345714 103345714 C T POLL Silent p.P105P 0.15 TCGA-50-5051-01 10 117885010 117885010 G A GFRA1 Silent p.D164D 0.17 TCGA-50-5051-01 10 129172131 129172134 GTAA - DOCK1 Splice_Site p.X1152_splice 0.30 TCGA-50-5051-01 10 26513487 26513487 C A GAD2 Missense_Mutation p.P211T 0.28 deleterious(0) probably_damaging(0.999) TCGA-50-5051-01 10 26513488 26513488 C A GAD2 Missense_Mutation p.P211Q 0.27 deleterious(0) probably_damaging(1) TCGA-50-5051-01 10 52610568 52610568 C A A1CF Splice_Site 0.36 TCGA-50-5051-01 10 99519120 99519121 CC - ZFYVE27 3'UTR 0.40 TCGA-50-5051-01 11 121000732 121000732 C T TECTA Missense_Mutation p.P918L 0.37 deleterious(0.03) benign(0.444) TCGA-50-5051-01 11 126276877 126276877 C G ST3GAL4 Silent p.L47L 0.19 TCGA-50-5051-01 11 32676433 32676433 A T CCDC73 Missense_Mutation p.I244N 0.14 deleterious(0) possibly_damaging(0.554) TCGA-50-5051-01 11 3797197 3797197 G C NUP98 Missense_Mutation p.S137C 0.41 deleterious(0) possibly_damaging(0.896) TCGA-50-5051-01 11 47819339 47819340 - A NUP160 Frame_Shift_Ins p.Y1094Lfs*10 0.35 TCGA-50-5051-01 11 66297387 66297387 C A BBS1 Silent p.S479S 0.23 TCGA-50-5051-01 12 132504687 132504687 G T EP400 Silent p.T1457T 0.38 TCGA-50-5051-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.60 deleterious(0.04) probably_damaging(0.993) TCGA-50-5051-01 12 52627365 52627365 C G KRT7 Missense_Mutation p.I95M 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-50-5051-01 12 56380777 56380777 G T RAB5B Silent p.G11G 0.31 TCGA-50-5051-01 12 80014945 80014945 G A PAWR Missense_Mutation p.R187W 0.12 deleterious(0) probably_damaging(0.997) TCGA-50-5051-01 12 85286010 85286010 G A SLC6A15 5'UTR 0.20 TCGA-50-5051-01 12 8998736 8998736 T A A2ML1 Missense_Mutation p.L534Q 0.54 deleterious(0) probably_damaging(0.949) TCGA-50-5051-01 13 109777613 109777613 C T MYO16 Missense_Mutation p.A1208V 0.11 deleterious(0.03) probably_damaging(0.987) TCGA-50-5051-01 13 28602366 28602366 G A FLT3 Silent p.L668L 0.67 TCGA-50-5051-01 14 106494338 106494338 C A IGHV2-5 Nonsense_Mutation p.G52* 0.20 TCGA-50-5051-01 14 20215612 20215612 T A OR4Q3 Missense_Mutation p.V9E 0.20 deleterious(0) benign(0.444) TCGA-50-5051-01 14 20248599 20248599 C A OR4M1 Missense_Mutation p.P40T 0.16 tolerated(0.31) probably_damaging(1) TCGA-50-5051-01 14 24566321 24566321 C T PCK2 Nonsense_Mutation p.R84* 0.04 TCGA-50-5051-01 14 55903438 55903438 C A TBPL2 Missense_Mutation p.S150I 0.20 deleterious_low_confidence(0.03) benign(0.006) TCGA-50-5051-01 15 43552356 43552356 C T TGM5 Silent p.A110A 0.24 TCGA-50-5051-01 15 89074122 89074122 A - DET1 Frame_Shift_Del p.F283Sfs*80 0.10 TCGA-50-5051-01 16 1250433 1250433 C T CACNA1H Silent p.A327A 0.24 TCGA-50-5051-01 16 17202764 17202764 G T XYLT1 Missense_Mutation p.Q890K 0.43 tolerated(0.26) benign(0.103) TCGA-50-5051-01 16 23160107 23160107 C A USP31 Missense_Mutation p.R162L 0.19 deleterious(0) probably_damaging(0.951) TCGA-50-5051-01 16 57111872 57111872 T - NLRC5 Frame_Shift_Del p.L1674Rfs*17 0.23 TCGA-50-5051-01 16 66842900 66842900 T A NAE1 Missense_Mutation p.D410V 0.21 tolerated(0.06) benign(0.011) TCGA-50-5051-01 16 70164389 70164389 G C PDPR Missense_Mutation p.G224A 0.16 tolerated(0.53) benign(0.09) TCGA-50-5051-01 16 71406079 71406079 G C CALB2 Missense_Mutation p.E40Q 0.17 deleterious(0.03) possibly_damaging(0.478) TCGA-50-5051-01 16 75146138 75146138 C T LDHD 3'UTR 0.60 TCGA-50-5051-01 17 21318895 21318895 C G KCNJ12 Missense_Mutation p.R81G 0.12 deleterious(0) probably_damaging(0.942) TCGA-50-5051-01 17 21319622 21319622 G T KCNJ12 Missense_Mutation p.W323L 0.07 deleterious(0) probably_damaging(1) TCGA-50-5051-01 17 39092709 39092709 C T KRT23 Silent p.T49T 0.25 TCGA-50-5051-01 17 4648623 4648623 C T ZMYND15 Silent p.P678P 0.29 TCGA-50-5051-01 17 48545931 48545931 G T CHAD Missense_Mutation p.L82M 0.24 tolerated(0.17) benign(0.338) TCGA-50-5051-01 17 79202754 79202754 A G ENTHD2 Missense_Mutation p.S518P 0.20 deleterious(0) probably_damaging(0.997) TCGA-50-5051-01 18 30349722 30349722 A T KLHL14 Missense_Mutation p.V278D 0.49 deleterious(0) probably_damaging(0.939) TCGA-50-5051-01 18 46447669 46447669 G T SMAD7 3'UTR 0.29 TCGA-50-5051-01 18 56203629 56203629 C A ALPK2 Missense_Mutation p.G1264C 0.27 deleterious(0.01) possibly_damaging(0.673) TCGA-50-5051-01 18 8376062 8376062 C G PTPRM Missense_Mutation p.R1064G 0.39 deleterious(0) probably_damaging(0.994) TCGA-50-5051-01 19 10602329 10602329 C T KEAP1 Missense_Mutation p.G417R 0.50 deleterious(0) probably_damaging(0.998) TCGA-50-5051-01 19 11598552 11598552 C A ZNF653 Silent p.V242V 0.27 TCGA-50-5051-01 19 56382227 56382227 G - NLRP4 Frame_Shift_Del p.E797Nfs*16 0.42 TCGA-50-5051-01 19 9068783 9068783 G T MUC16 Silent p.L6221L 0.49 TCGA-50-5051-01 1 115455691 115455691 C G SYCP1 Missense_Mutation p.L523V 0.29 deleterious(0.01) possibly_damaging(0.801) TCGA-50-5051-01 1 144874682 144874682 T C PDE4DIP Silent p.S1642S 0.28 TCGA-50-5051-01 1 148024857 148024857 C T NBPF14 Missense_Mutation p.G53E 0.20 deleterious(0) probably_damaging(0.991) TCGA-50-5051-01 1 152058113 152058113 T C TCHHL1 Missense_Mutation p.D682G 0.34 tolerated(0.3) benign(0.003) TCGA-50-5051-01 1 152191409 152191409 C A HRNR Missense_Mutation p.G899V 0.17 unknown(0) TCGA-50-5051-01 1 15956966 15956966 C T DDI2 Nonsense_Mutation p.R139* 0.07 TCGA-50-5051-01 1 160063787 160063787 A C IGSF8 Missense_Mutation p.V206G 0.07 tolerated(0.43) benign(0.135) TCGA-50-5051-01 1 168262479 168262479 C T TBX19 Missense_Mutation p.T189I 0.21 deleterious(0) probably_damaging(0.958) TCGA-50-5051-01 1 177250606 177250606 C T BRINP2 Missense_Mutation p.A765V 0.10 tolerated(0.15) benign(0.116) TCGA-50-5051-01 1 210334260 210334260 A C SYT14 Missense_Mutation p.K578T 0.43 deleterious(0) possibly_damaging(0.907) TCGA-50-5051-01 1 220246208 220246208 G C BPNT1 Missense_Mutation p.A106G 0.08 tolerated(0.24) benign(0) TCGA-50-5051-01 1 226110038 226110038 G T RP4-559A3.7 Missense_Mutation p.H62N 0.54 tolerated_low_confidence(0.13) benign(0.202) TCGA-50-5051-01 1 240635748 240635748 G T FMN2 Nonsense_Mutation p.G1713* 0.19 TCGA-50-5051-01 1 240635749 240635749 G T FMN2 Missense_Mutation p.G1713V 0.19 possibly_damaging(0.761) TCGA-50-5051-01 1 240975303 240975303 C A RGS7 Missense_Mutation p.G333C 0.16 deleterious(0.02) benign(0.058) TCGA-50-5051-01 1 31211800 31211800 G A LAPTM5 Missense_Mutation p.S166F 0.31 tolerated(0.1) possibly_damaging(0.706) TCGA-50-5051-01 1 43638521 43638521 C G WDR65 Missense_Mutation p.P33A 0.13 tolerated(0.1) probably_damaging(0.965) TCGA-50-5051-01 20 13830946 13830946 C T SEL1L2 Missense_Mutation p.R500K 0.24 tolerated_low_confidence(0.18) benign(0.113) TCGA-50-5051-01 20 45920590 45920590 C A ZMYND8 Missense_Mutation p.D204Y 0.58 deleterious(0.02) possibly_damaging(0.561) TCGA-50-5051-01 20 9449216 9449221 AGGGAA - PLCB4 Splice_Site p.X1071_splice 0.18 TCGA-50-5051-01 21 27284177 27284177 T A APP Silent p.P595P 0.10 TCGA-50-5051-01 21 28210756 28210756 A G ADAMTS1 Splice_Site p.X735_splice 0.66 TCGA-50-5051-01 2 107459840 107459840 G T ST6GAL2 Silent p.S198S 0.24 TCGA-50-5051-01 2 141707940 141707940 C A LRP1B Silent p.V1000V 0.17 TCGA-50-5051-01 2 197565880 197565880 G T CCDC150 Silent p.L557L 0.31 TCGA-50-5051-01 2 20096878 20096878 T A TTC32 Missense_Mutation p.D109V 0.29 deleterious(0) probably_damaging(0.989) TCGA-50-5051-01 2 37276863 37276864 - A HEATR5B Frame_Shift_Ins p.G877Wfs*15 0.38 TCGA-50-5051-01 2 68772346 68772346 T C APLF Silent p.F396F 0.25 TCGA-50-5051-01 3 107885748 107885748 C G IFT57 Missense_Mutation p.E312Q 0.16 deleterious(0) possibly_damaging(0.899) TCGA-50-5051-01 3 123016213 123016213 C T ADCY5 Missense_Mutation p.G973R 0.22 tolerated(0.25) benign(0.048) TCGA-50-5051-01 3 123987958 123987958 C T KALRN Silent p.D273D 0.61 TCGA-50-5051-01 3 183683279 183683279 A G ABCC5 Missense_Mutation p.L615P 0.10 deleterious(0.04) possibly_damaging(0.701) TCGA-50-5051-01 3 184106429 184106429 G T CHRD Missense_Mutation p.R870L 0.47 deleterious(0) probably_damaging(0.998) TCGA-50-5051-01 3 54952687 54952687 C A LRTM1 Silent p.P279P 0.35 TCGA-50-5051-01 3 7620336 7620336 C A GRM7 Silent p.I581I 0.47 TCGA-50-5051-01 4 119161837 119161837 C G NDST3 Missense_Mutation p.F759L 0.19 deleterious(0.05) possibly_damaging(0.699) TCGA-50-5051-01 4 126371065 126371065 G T FAT4 Missense_Mutation p.S2965I 0.41 probably_damaging(0.995) TCGA-50-5051-01 4 1347164 1347164 C G UVSSA Silent p.G299G 0.23 TCGA-50-5051-01 4 155506940 155506940 C A FGA Missense_Mutation p.R547S 0.29 tolerated(0.74) benign(0.003) TCGA-50-5051-01 4 16590420 16590420 G T LDB2 Silent p.T148T 0.18 TCGA-50-5051-01 4 166231753 166231753 G T KLHL2 Missense_Mutation p.G367V 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-50-5051-01 4 167022082 167022082 A T TLL1 3'UTR 0.22 TCGA-50-5051-01 4 367610 367610 C T ZNF141 Missense_Mutation p.R462W 0.23 tolerated(0.54) benign(0.005) TCGA-50-5051-01 4 47880674 47880674 T A NFXL1 Silent p.P649P 0.29 TCGA-50-5051-01 5 128302275 128302275 C A SLC27A6 Missense_Mutation p.R149S 0.34 tolerated(1) benign(0.012) TCGA-50-5051-01 5 140480848 140480848 G A PCDHB3 Silent p.Q205Q 0.36 TCGA-50-5051-01 5 140740860 140740860 G T PCDHGB2 Silent p.V386V 0.36 TCGA-50-5051-01 5 150844717 150844717 G A SLC36A1 Missense_Mutation p.A136T 0.10 deleterious(0.03) possibly_damaging(0.49) TCGA-50-5051-01 5 161128527 161128527 G T GABRA6 Silent p.L370L 0.36 TCGA-50-5051-01 5 35065333 35065333 G A PRLR Missense_Mutation p.A576V 0.37 tolerated(0.09) benign(0.164) TCGA-50-5051-01 5 68400536 68400536 C G SLC30A5 Missense_Mutation p.P118A 0.03 deleterious(0.04) possibly_damaging(0.609) TCGA-50-5051-01 5 68473356 68473356 C T CCNB1 Silent p.V400V 0.35 TCGA-50-5051-01 6 133783899 133783899 C T EYA4 Missense_Mutation p.P241S 0.33 tolerated(0.27) probably_damaging(0.954) TCGA-50-5051-01 6 151161073 151161073 C T PLEKHG1 Missense_Mutation p.L1067F 0.24 tolerated(0.7) benign(0.071) TCGA-50-5051-01 6 166578318 166578318 A C T Missense_Mutation p.F213C 0.28 deleterious(0) probably_damaging(1) TCGA-50-5051-01 6 167570422 167570422 G T GPR31 Missense_Mutation p.L300I 0.32 tolerated(0.09) benign(0.023) TCGA-50-5051-01 6 31700099 31700099 A C CLIC1 Missense_Mutation p.D153E 0.07 tolerated(0.06) probably_damaging(0.968) TCGA-50-5051-01 6 32170343 32170343 G T NOTCH4 Missense_Mutation p.P1089T 0.30 tolerated(0.47) benign(0.018) TCGA-50-5051-01 6 40399871 40399871 G T LRFN2 Missense_Mutation p.R328S 0.32 deleterious(0) possibly_damaging(0.826) TCGA-50-5051-01 6 41166018 41166018 G T TREML2 Silent p.R69R 0.24 TCGA-50-5051-01 6 50807918 50807918 G T TFAP2B Missense_Mutation p.E330D 0.28 deleterious(0.01) possibly_damaging(0.74) TCGA-50-5051-01 6 71665881 71665881 G A B3GAT2 Silent p.A84A 0.19 TCGA-50-5051-01 6 90424410 90424410 T A MDN1 Silent p.G2307G 0.26 TCGA-50-5051-01 7 100151829 100151829 C T AGFG2 Silent p.P233P 0.37 TCGA-50-5051-01 7 127013680 127013680 A T ZNF800 Missense_Mutation p.N570K 0.29 tolerated(0.08) benign(0.321) TCGA-50-5051-01 7 128655115 128655115 C A TNPO3 Missense_Mutation p.R157L 0.12 deleterious(0.04) probably_damaging(0.968) TCGA-50-5051-01 7 142574906 142574906 A T TRPV6 Missense_Mutation p.L159H 0.19 tolerated(0.1) benign(0.025) TCGA-50-5051-01 7 19748635 19748635 G A TWISTNB Missense_Mutation p.A2V 0.13 tolerated_low_confidence(0.16) benign(0.071) TCGA-50-5051-01 7 31876892 31876892 A C PDE1C Missense_Mutation p.S429A 0.41 tolerated(0.07) possibly_damaging(0.894) TCGA-50-5051-01 7 35271147 35271147 G T TBX20 Silent p.R287R 0.25 TCGA-50-5051-01 7 41729798 41729798 C T INHBA Missense_Mutation p.C244Y 0.10 deleterious(0) probably_damaging(0.969) TCGA-50-5051-01 8 113237150 113237150 A T CSMD3 Silent p.P3658P 0.08 TCGA-50-5051-01 8 116426992 116426992 C A TRPS1 Missense_Mutation p.L1048F 0.45 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-50-5051-01 8 141745432 141745432 T C PTK2 Missense_Mutation p.T650A 0.50 tolerated(0.24) benign(0.026) TCGA-50-5051-01 8 143996585 143996585 G T CYP11B2 Missense_Mutation p.L158I 0.24 tolerated(0.38) benign(0.044) TCGA-50-5051-01 8 2037867 2037867 G T MYOM2 Missense_Mutation p.A561S 0.32 tolerated(0.09) possibly_damaging(0.516) TCGA-50-5051-01 8 52323848 52323848 C G PXDNL Missense_Mutation p.R675P 0.21 deleterious(0) benign(0.264) TCGA-50-5051-01 8 72975784 72975784 C G TRPA1 Missense_Mutation p.C192S 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-50-5051-01 9 117165060 117165060 C A DFNB31 Missense_Mutation p.V900F 0.37 deleterious(0) probably_damaging(0.973) TCGA-50-5051-01 9 139571431 139571431 C G AGPAT2 Missense_Mutation p.E158D 0.08 tolerated(0.25) benign(0.013) TCGA-50-5051-01 9 34557978 34557978 C T CNTFR Silent p.P108P 0.13 TCGA-50-5051-01 X 108638636 108638636 C A GUCY2F Missense_Mutation p.Q786H 0.38 tolerated(0.07) benign(0.004) TCGA-50-5051-01 X 111097166 111097166 C A TRPC5 Missense_Mutation p.G357W 0.37 deleterious(0) probably_damaging(0.995) TCGA-50-5051-01 X 129148663 129148663 C A BCORL1 Missense_Mutation p.R639S 0.16 probably_damaging(0.998) TCGA-50-5051-01 X 135638789 135638789 C G VGLL1 3'UTR 0.46 TCGA-50-5051-01 X 140994335 140994335 C G MAGEC1 Missense_Mutation p.S382C 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.7) TCGA-50-5051-01 X 141290894 141290894 G T MAGEC2 Missense_Mutation p.P294T 0.09 deleterious(0.02) probably_damaging(1) TCGA-50-5051-01 X 149638271 149638271 C A MAMLD1 Silent p.G117G 0.33 TCGA-50-5051-01 X 55170121 55170121 C A FAM104B 3'Flank 0.34 TCGA-50-5051-01 X 63411180 63411180 C T AMER1 Missense_Mutation p.V663M 0.09 tolerated(0.09) probably_damaging(0.988) TCGA-50-5051-01 X 69261742 69261742 G T AWAT2 Silent p.L306L 0.31 TCGA-50-5051-01 X 70347271 70347271 T C MED12 Missense_Mutation p.Y979H 0.06 possibly_damaging(0.81) TCGA-50-5051-01 X 71349706 71349706 G T RGAG4 Missense_Mutation p.A562D 0.32 deleterious_low_confidence(0) unknown(0) TCGA-50-5051-01 X 79698296 79698296 T A FAM46D Silent p.I86I 0.33 TCGA-50-5051-01 X 99661991 99661991 G A PCDH19 Silent p.A535A 0.39 TCGA-50-5055-01 10 74618992 74618992 G A MCU Missense_Mutation p.R93Q 0.09 deleterious(0) probably_damaging(0.992) TCGA-50-5055-01 11 47772543 47772543 T C FNBP4 Missense_Mutation p.I277M 0.08 tolerated(0.38) benign(0.003) TCGA-50-5055-01 12 123109155 123109155 G A KNTC1 Missense_Mutation p.A2176T 0.13 deleterious(0) probably_damaging(0.984) TCGA-50-5055-01 12 44238567 44238567 G A TMEM117 Missense_Mutation p.S38N 0.08 deleterious(0) possibly_damaging(0.451) TCGA-50-5055-01 14 45587247 45587247 C T FKBP3 Missense_Mutation p.G202R 0.07 deleterious(0) probably_damaging(1) TCGA-50-5055-01 14 54416746 54416746 G A BMP4 3'UTR 0.10 TCGA-50-5055-01 14 99723900 99723900 G A BCL11B Missense_Mutation p.P112L 0.09 deleterious(0) benign(0.021) TCGA-50-5055-01 15 71535077 71535077 C T THSD4 Missense_Mutation p.T185M 0.05 tolerated(0.12) benign(0.003) TCGA-50-5055-01 16 68160359 68160359 C T NFATC3 Missense_Mutation p.S416L 0.06 deleterious(0.02) possibly_damaging(0.841) TCGA-50-5055-01 19 42507507 42507507 G A GRIK5 Missense_Mutation p.R831W 0.12 deleterious(0) possibly_damaging(0.839) TCGA-50-5055-01 1 186302290 186302290 C G TPR Missense_Mutation p.E1807Q 0.07 benign(0.403) TCGA-50-5055-01 22 38120812 38120812 A C TRIOBP Missense_Mutation p.Q750P 0.07 deleterious_low_confidence(0.03) benign(0.006) TCGA-50-5055-01 2 107007442 107007443 - A PLGLA RNA 0.14 TCGA-50-5055-01 2 167760103 167760103 G T XIRP2 Missense_Mutation p.Q37H 0.08 possibly_damaging(0.748) TCGA-50-5055-01 2 167760104 167760104 C T XIRP2 Missense_Mutation p.P38S 0.08 possibly_damaging(0.833) TCGA-50-5055-01 2 168101995 168101995 T A XIRP2 Missense_Mutation p.S1365T 0.06 possibly_damaging(0.604) TCGA-50-5055-01 4 69978332 69978332 T G UGT2B7 Missense_Mutation p.S490A 0.04 deleterious(0.01) benign(0.307) TCGA-50-5055-01 4 90169159 90169159 G A GPRIN3 Silent p.D701D 0.12 TCGA-50-5055-01 5 153149875 153149875 G T GRIA1 Nonsense_Mutation p.E734* 0.06 TCGA-50-5055-01 5 178408828 178408828 C T GRM6 Missense_Mutation p.V822M 0.03 tolerated(0.14) possibly_damaging(0.481) TCGA-50-5055-01 6 12120213 12120213 T C HIVEP1 Missense_Mutation p.I62T 0.06 deleterious(0) probably_damaging(0.999) TCGA-50-5055-01 7 48266967 48266967 G C ABCA13 Missense_Mutation p.D193H 0.04 benign(0.321) TCGA-50-5055-01 7 99747177 99747180 TACT - LAMTOR4 Frame_Shift_Del p.V20Gfs*39 0.09 TCGA-50-5055-01 X 37663304 37663304 G C CYBB Missense_Mutation p.V358L 0.08 tolerated(0.07) possibly_damaging(0.681) TCGA-50-5066-01 10 17949553 17949553 C T MRC1L1 Missense_Mutation p.T1306M 0.31 benign(0.01) TCGA-50-5066-01 10 27494124 27494124 T A ACBD5 Intron 0.20 TCGA-50-5066-01 10 48371205 48371205 C T ZNF488 Nonsense_Mutation p.Q225* 0.38 TCGA-50-5066-01 10 60994229 60994229 A G PHYHIPL Missense_Mutation p.E91G 0.09 deleterious(0.03) possibly_damaging(0.46) TCGA-50-5066-01 10 7608274 7608274 T C ITIH5 Missense_Mutation p.N749S 0.18 tolerated(0.06) benign(0.343) TCGA-50-5066-01 10 92508872 92508872 C A HTR7 Missense_Mutation p.W340L 0.27 deleterious(0) probably_damaging(1) TCGA-50-5066-01 10 95395390 95395390 C A PDE6C Missense_Mutation p.S469Y 0.33 deleterious(0.02) probably_damaging(0.91) TCGA-50-5066-01 11 104877974 104877974 T A CASP5 Missense_Mutation p.H103L 0.14 tolerated(0.07) benign(0.007) TCGA-50-5066-01 11 105797526 105797526 C T GRIA4 Missense_Mutation p.S636L 0.11 deleterious(0) probably_damaging(0.995) TCGA-50-5066-01 11 110561279 110561279 G T ARHGAP20 Missense_Mutation p.P60H 0.07 deleterious(0.05) probably_damaging(0.948) TCGA-50-5066-01 11 120351059 120351059 A G ARHGEF12 Missense_Mutation p.E1386G 0.06 deleterious_low_confidence(0) possibly_damaging(0.67) TCGA-50-5066-01 11 1605902 1605902 G T KRTAP5-1 Missense_Mutation p.S193Y 0.14 deleterious_low_confidence(0.03) unknown(0) TCGA-50-5066-01 11 1651151 1651151 C T KRTAP5-5 Silent p.G27G 0.08 TCGA-50-5066-01 11 18028280 18028280 G A SERGEF Silent p.L70L 0.13 TCGA-50-5066-01 11 20699489 20699489 G T NELL1 Missense_Mutation p.G23W 0.14 deleterious(0) probably_damaging(1) TCGA-50-5066-01 11 31086155 31086155 T A DCDC1 Missense_Mutation p.S818C 0.09 deleterious_low_confidence(0.03) probably_damaging(0.966) TCGA-50-5066-01 11 4870218 4870218 A G OR51S1 Missense_Mutation p.L74P 0.12 deleterious(0) probably_damaging(1) TCGA-50-5066-01 11 4870358 4870358 G T OR51S1 Silent p.G27G 0.14 TCGA-50-5066-01 11 499889 499889 G A RNH1 Missense_Mutation p.A128V 0.09 tolerated(0.07) benign(0.019) TCGA-50-5066-01 11 5290728 5290728 C A HBE1 Nonsense_Mutation p.E91* 0.22 TCGA-50-5066-01 11 55064955 55064955 C T TRIM51HP Intron 0.09 TCGA-50-5066-01 11 55322518 55322518 C A OR4C15 Missense_Mutation p.H246N 0.11 deleterious_low_confidence(0) possibly_damaging(0.772) TCGA-50-5066-01 11 55339950 55339951 CG A OR4C16 Frame_Shift_Del p.T116Kfs*16 0.13 TCGA-50-5066-01 11 56020314 56020314 T A OR5T3 Silent p.P213P 0.12 TCGA-50-5066-01 11 5799626 5799626 A T OR52N5 Missense_Mutation p.L80H 0.11 deleterious(0) possibly_damaging(0.765) TCGA-50-5066-01 11 5809935 5809935 T A OR52N1 Missense_Mutation p.S38C 0.08 deleterious(0.02) benign(0.003) TCGA-50-5066-01 11 59245659 59245659 C A OR4D10 Missense_Mutation p.P253T 0.09 deleterious(0) probably_damaging(0.992) TCGA-50-5066-01 11 59828639 59828639 C T MS4A3 Silent p.A2A 0.10 TCGA-50-5066-01 11 61897387 61897387 G T INCENP Missense_Mutation p.A130S 0.14 tolerated(0.06) unknown(0) TCGA-50-5066-01 11 63488495 63488495 G C RTN3 Missense_Mutation p.D841H 0.18 tolerated(0.15) benign(0.015) TCGA-50-5066-01 11 65161533 65161533 G A FRMD8 Missense_Mutation p.R126Q 0.14 tolerated(0.24) benign(0.28) TCGA-50-5066-01 11 7949615 7949615 C G OR10A6 Missense_Mutation p.A199P 0.13 deleterious(0.04) possibly_damaging(0.866) TCGA-50-5066-01 11 83252726 83252726 T A DLG2 Missense_Mutation p.R706W 0.17 deleterious(0) probably_damaging(0.997) TCGA-50-5066-01 11 89883723 89883723 G C NAALAD2 Missense_Mutation p.C186S 0.11 deleterious(0.01) probably_damaging(0.993) TCGA-50-5066-01 12 102164889 102164889 T A GNPTAB Missense_Mutation p.N273I 0.05 deleterious(0.04) benign(0.181) TCGA-50-5066-01 12 103988241 103988241 A G STAB2 Missense_Mutation p.Y95C 0.12 deleterious(0.05) possibly_damaging(0.613) TCGA-50-5066-01 12 109694035 109694035 G T ACACB Missense_Mutation p.R2086L 0.38 deleterious(0) probably_damaging(0.996) TCGA-50-5066-01 12 12247496 12247496 C T BCL2L14 Intron 0.20 TCGA-50-5066-01 12 131311793 131311793 C G STX2 Missense_Mutation p.G17A 0.26 tolerated(0.47) benign(0.011) TCGA-50-5066-01 12 133375049 133375049 G T GOLGA3 Silent p.T605T 0.13 TCGA-50-5066-01 12 22068699 22068699 T C ABCC9 Missense_Mutation p.K240R 0.16 tolerated(0.21) benign(0.015) TCGA-50-5066-01 12 22354578 22354578 C A ST8SIA1 Nonsense_Mutation p.E327* 0.12 TCGA-50-5066-01 12 29596311 29596311 G T OVCH1 Missense_Mutation p.P1047Q 0.14 tolerated(0.45) benign(0.387) TCGA-50-5066-01 12 29596369 29596369 T G OVCH1 Missense_Mutation p.M1028L 0.09 tolerated(0.57) benign(0.002) TCGA-50-5066-01 12 29630272 29630272 A T OVCH1 Splice_Site p.X416_splice 0.06 TCGA-50-5066-01 12 33049567 33049567 G T PKP2 Silent p.P33P 0.46 TCGA-50-5066-01 12 48369172 48369172 G T COL2A1 Missense_Mutation p.P1272T 0.27 unknown(0) TCGA-50-5066-01 12 56827699 56827699 C A TIMELESS Missense_Mutation p.D37Y 0.06 tolerated(0.09) probably_damaging(0.946) TCGA-50-5066-01 12 7188193 7188193 C A C1R Silent p.L535L 0.14 TCGA-50-5066-01 12 85459121 85459121 C T LRRIQ1 Missense_Mutation p.L825F 0.12 deleterious(0) probably_damaging(0.999) TCGA-50-5066-01 12 99837486 99837486 C G ANKS1B Missense_Mutation p.A514P 0.18 tolerated(0.05) probably_damaging(0.991) TCGA-50-5066-01 13 53010452 53010452 G C VPS36 Silent p.L108L 0.29 TCGA-50-5066-01 13 93518549 93518549 A T GPC5 Missense_Mutation p.M526L 0.08 tolerated(1) benign(0.001) TCGA-50-5066-01 14 100402407 100402407 T A EML1 Missense_Mutation p.Y670N 0.07 deleterious(0) probably_damaging(0.956) TCGA-50-5066-01 14 105412931 105412931 C G AHNAK2 Missense_Mutation p.A2953P 0.11 benign(0.015) TCGA-50-5066-01 14 107083274 107083274 G T IGHV4-59 Silent p.A110A 0.12 TCGA-50-5066-01 14 107113822 107113822 G T IGHV3-64 Silent p.S91S 0.12 TCGA-50-5066-01 14 20784496 20784496 G A CCNB1IP1 Missense_Mutation p.R63C 0.05 tolerated(0.07) benign(0.134) TCGA-50-5066-01 14 22985248 22985248 G C TRAJ27 5'Flank 0.11 TCGA-50-5066-01 14 35593129 35593129 G T KIAA0391 Missense_Mutation p.W226C 0.18 deleterious(0) probably_damaging(0.99) TCGA-50-5066-01 14 38723908 38723908 C - CLEC14A Frame_Shift_Del p.P441Rfs*24 0.15 TCGA-50-5066-01 14 39650219 39650219 G C PNN Missense_Mutation p.D436H 0.11 deleterious_low_confidence(0) possibly_damaging(0.773) TCGA-50-5066-01 14 42368149 42368149 G T LRFN5 Missense_Mutation p.V710F 0.12 tolerated_low_confidence(0.05) benign(0.005) TCGA-50-5066-01 14 51192620 51192620 G A NIN Silent p.N2081N 0.06 TCGA-50-5066-01 14 52508881 52508881 C A NID2 Silent p.L589L 0.15 TCGA-50-5066-01 14 59112816 59112816 G A DACT1 Missense_Mutation p.R492K 0.11 tolerated(0.37) benign(0.004) TCGA-50-5066-01 14 60903630 60903630 A G C14orf39 Missense_Mutation p.I566T 0.12 tolerated(0.8) unknown(0) TCGA-50-5066-01 14 65194383 65194383 A G PLEKHG3 Missense_Mutation p.S12G 0.17 deleterious(0.01) benign(0.03) TCGA-50-5066-01 14 71197312 71197312 A T MAP3K9 Missense_Mutation p.S1048T 0.07 tolerated(0.35) probably_damaging(0.99) TCGA-50-5066-01 14 72191385 72191385 A C SIPA1L1 Splice_Site p.X1504_splice 0.14 TCGA-50-5066-01 14 74759024 74759024 C A ABCD4 Nonsense_Mutation p.E362* 0.11 TCGA-50-5066-01 14 79175640 79175640 C A NRXN3 Silent p.G61G 0.12 TCGA-50-5066-01 14 89154817 89154817 C A EML5 Missense_Mutation p.G847V 0.10 deleterious(0) probably_damaging(0.975) TCGA-50-5066-01 14 90437534 90437534 G T TDP1 Silent p.L225L 0.12 TCGA-50-5066-01 14 90870298 90870298 C T CALM1 Nonsense_Mutation p.R91* 0.10 TCGA-50-5066-01 14 95080889 95080889 G T SERPINA3 Missense_Mutation p.E37D 0.13 tolerated(0.09) benign(0.048) TCGA-50-5066-01 15 100649235 100649235 C G ADAMTS17 Missense_Mutation p.G659R 0.24 tolerated(0.17) probably_damaging(1) TCGA-50-5066-01 15 24921270 24921270 C A NPAP1 Missense_Mutation p.P86T 0.12 deleterious(0) possibly_damaging(0.803) TCGA-50-5066-01 15 28090154 28090154 C A OCA2 Missense_Mutation p.G795W 0.20 deleterious(0) probably_damaging(1) TCGA-50-5066-01 15 34528982 34528982 C T SLC12A6 Missense_Mutation p.R990H 0.06 deleterious(0) probably_damaging(0.999) TCGA-50-5066-01 15 55970202 55970202 T C PRTG Missense_Mutation p.I392V 0.23 tolerated(0.36) benign(0.088) TCGA-50-5066-01 15 62292765 62292765 C A VPS13C Nonsense_Mutation p.E451* 0.25 TCGA-50-5066-01 15 74472400 74472400 G T STRA6 3'UTR 0.09 TCGA-50-5066-01 15 75982567 75982567 G A CSPG4 Missense_Mutation p.A280V 0.12 deleterious(0.01) possibly_damaging(0.579) TCGA-50-5066-01 15 80889556 80889556 C A ARNT2 3'UTR 0.24 TCGA-50-5066-01 16 24583167 24583167 C T RBBP6 Missense_Mutation p.P1594S 0.06 tolerated_low_confidence(0.06) unknown(0) TCGA-50-5066-01 16 26147121 26147121 T - HS3ST4 Frame_Shift_Del p.I308Tfs*16 0.12 TCGA-50-5066-01 16 30106460 30106460 T C YPEL3 Missense_Mutation p.Q80R 0.17 tolerated(0.21) possibly_damaging(0.848) TCGA-50-5066-01 16 56423276 56423276 C G AMFR Missense_Mutation p.R366P 0.18 deleterious(0.01) probably_damaging(0.918) TCGA-50-5066-01 16 57756693 57756693 G A CCDC135 Missense_Mutation p.A450T 0.21 deleterious(0.04) benign(0.351) TCGA-50-5066-01 16 67919707 67919707 C T NRN1L Silent p.I54I 0.19 TCGA-50-5066-01 16 69959121 69959121 G T WWP2 Intron 0.41 TCGA-50-5066-01 16 723512 723512 C T RHOT2 Missense_Mutation p.S588F 0.21 tolerated(0.06) possibly_damaging(0.853) TCGA-50-5066-01 16 77775523 77775523 C T NUDT7 Silent p.N131N 0.16 TCGA-50-5066-01 16 81973536 81973536 A T PLCG2 Missense_Mutation p.E1118V 0.09 deleterious(0) probably_damaging(0.932) TCGA-50-5066-01 17 10541663 10541663 C T MYH3 Silent p.R1142R 0.30 TCGA-50-5066-01 17 11556163 11556163 G T DNAH9 Missense_Mutation p.E813D 0.28 benign(0.028) TCGA-50-5066-01 17 28407144 28407144 G A EFCAB5 Missense_Mutation p.E1028K 0.25 deleterious(0.04) probably_damaging(0.993) TCGA-50-5066-01 17 3431341 3431341 G T TRPV3 Missense_Mutation p.A494D 0.09 deleterious(0) probably_damaging(0.989) TCGA-50-5066-01 17 47917224 47917224 G T TAC4 Missense_Mutation p.L100M 0.14 tolerated(0.22) possibly_damaging(0.563) TCGA-50-5066-01 17 5086105 5086105 T C ZNF594 Missense_Mutation p.T483A 0.23 deleterious(0.04) benign(0.133) TCGA-50-5066-01 17 5364391 5364391 G A DHX33 Silent p.F239F 0.11 TCGA-50-5066-01 17 71391419 71391419 A G SDK2 Missense_Mutation p.V1156A 0.24 tolerated(0.23) benign(0.012) TCGA-50-5066-01 17 73921504 73921504 C T FBF1 Missense_Mutation p.E284K 0.28 tolerated(0.08) benign(0.104) TCGA-50-5066-01 17 7578393 7578393 A T TP53 Missense_Mutation p.H179Q 0.24 deleterious(0) probably_damaging(1) TCGA-50-5066-01 17 7758930 7758930 C A TMEM88 Nonsense_Mutation p.Y126* 0.28 TCGA-50-5066-01 17 80393670 80393670 G A HEXDC Missense_Mutation p.V185M 0.07 deleterious(0.01) possibly_damaging(0.576) TCGA-50-5066-01 18 20573261 20573261 C G RBBP8 Missense_Mutation p.L491V 0.14 deleterious(0) probably_damaging(0.997) TCGA-50-5066-01 18 23861998 23861998 C T TAF4B Nonsense_Mutation p.Q316* 0.08 TCGA-50-5066-01 18 34205613 34205613 C A FHOD3 Nonsense_Mutation p.S366* 0.17 TCGA-50-5066-01 18 49867080 49867080 G T DCC 5'UTR 0.14 TCGA-50-5066-01 18 7049207 7049207 G T LAMA1 Missense_Mutation p.P213H 0.15 deleterious(0) probably_damaging(0.964) TCGA-50-5066-01 19 13011369 13011369 G A SYCE2 Nonsense_Mutation p.Q134* 0.23 TCGA-50-5066-01 19 13050438 13050438 C T CALR Silent p.I130I 0.17 TCGA-50-5066-01 19 16548592 16548592 G A EPS15L1 Missense_Mutation p.P100S 0.12 deleterious(0) possibly_damaging(0.637) TCGA-50-5066-01 19 36387822 36387822 C G NFKBID Missense_Mutation p.G49R 0.48 deleterious(0) probably_damaging(0.981) TCGA-50-5066-01 19 36634000 36634000 C T CAPNS1 Silent p.D142D 0.44 TCGA-50-5066-01 19 43371900 43371900 G T PSG1 3'UTR 0.47 TCGA-50-5066-01 19 43528911 43528911 G T PSG11 Missense_Mutation p.T121N 0.50 deleterious(0.01) possibly_damaging(0.644) TCGA-50-5066-01 19 43762451 43762451 G T PSG9 Silent p.P382P 0.38 TCGA-50-5066-01 19 46032229 46032229 G A OPA3 3'UTR 0.22 TCGA-50-5066-01 19 49642922 49642922 C T PPFIA3 Intron 0.30 TCGA-50-5066-01 19 54780306 54780306 C G LILRB2 Missense_Mutation p.Q496H 0.18 tolerated(0.05) possibly_damaging(0.547) TCGA-50-5066-01 19 56369522 56369522 C A NLRP4 Silent p.R255R 0.17 TCGA-50-5066-01 19 57286342 57286342 G C ZIM2 Missense_Mutation p.A433G 0.25 tolerated(0.08) benign(0.188) TCGA-50-5066-01 19 58231624 58231624 T C ZNF671 3'UTR 0.21 TCGA-50-5066-01 19 58453004 58453004 C A ZNF256 Missense_Mutation p.S391I 0.25 tolerated(0.23) benign(0.304) TCGA-50-5066-01 1 120906333 120906333 G T RP11-439A17.4 5'Flank 0.16 TCGA-50-5066-01 1 120906334 120906334 G T RP11-439A17.4 5'Flank 0.16 TCGA-50-5066-01 1 143912270 143912270 T A FAM72D Missense_Mutation p.K9M 0.17 deleterious(0.02) possibly_damaging(0.478) TCGA-50-5066-01 1 150443311 150443311 G A RPRD2 Silent p.L629L 0.19 TCGA-50-5066-01 1 152325389 152325389 C G FLG2 Missense_Mutation p.G1625R 0.04 probably_damaging(0.979) TCGA-50-5066-01 1 159921434 159921434 G T SLAMF9 3'UTR 0.20 TCGA-50-5066-01 1 16895567 16895567 C A NBPF1 Splice_Site p.X872_splice 0.03 TCGA-50-5066-01 1 176564456 176564456 C A PAPPA2 Silent p.V572V 0.21 TCGA-50-5066-01 1 179112177 179112177 C A ABL2 Intron 0.27 TCGA-50-5066-01 1 180887047 180887047 A G KIAA1614 Missense_Mutation p.N353S 0.08 tolerated(0.55) benign(0.029) TCGA-50-5066-01 1 198687238 198687238 G - PTPRC Frame_Shift_Del p.W489* 0.17 TCGA-50-5066-01 1 203024683 203024683 C A PPFIA4 Silent p.T145T 0.16 TCGA-50-5066-01 1 207647191 207647191 G C CR2 Missense_Mutation p.G734A 0.07 tolerated(0.49) benign(0.281) TCGA-50-5066-01 1 226784561 226784561 G T C1orf95 Missense_Mutation p.R87S 0.16 deleterious(0.01) possibly_damaging(0.547) TCGA-50-5066-01 1 228645844 228645844 C A HIST3H2BB Missense_Mutation p.S5Y 0.27 deleterious_low_confidence(0) benign(0.089) TCGA-50-5066-01 1 229737881 229737881 T C TAF5L Intron 0.24 TCGA-50-5066-01 1 229773858 229773858 A C URB2 Silent p.P1166P 0.32 TCGA-50-5066-01 1 230398372 230398372 A T GALNT2 Missense_Mutation p.Y397F 0.06 tolerated(0.09) benign(0.082) TCGA-50-5066-01 1 230472911 230472911 T A PGBD5 Missense_Mutation p.I271F 0.23 deleterious(0) possibly_damaging(0.832) TCGA-50-5066-01 1 232534931 232534931 G T SIPA1L2 Missense_Mutation p.T1704K 0.17 deleterious(0) benign(0.06) TCGA-50-5066-01 1 248112611 248112611 G T OR2L8 Missense_Mutation p.G151V 0.10 deleterious(0.01) possibly_damaging(0.702) TCGA-50-5066-01 1 248343380 248343380 C A OR2M2 Silent p.V31V 0.28 TCGA-50-5066-01 1 248685220 248685220 C A OR2G6 Silent p.T91T 0.17 TCGA-50-5066-01 1 29543143 29543143 C A MECR Missense_Mutation p.M77I 0.12 tolerated(0.2) benign(0.158) TCGA-50-5066-01 1 38227423 38227423 C T EPHA10 Silent p.E168E 0.28 TCGA-50-5066-01 1 47395892 47395892 G C CYP4A11 Silent p.T485T 0.12 TCGA-50-5066-01 1 62329964 62329964 G T INADL Missense_Mutation p.D832Y 0.11 deleterious(0) possibly_damaging(0.664) TCGA-50-5066-01 1 65878623 65878623 A G DNAJC6 Missense_Mutation p.Y943C 0.12 deleterious(0) probably_damaging(0.999) TCGA-50-5066-01 1 68904894 68904894 C G RPE65 Missense_Mutation p.E280Q 0.09 tolerated(0.23) probably_damaging(0.998) TCGA-50-5066-01 1 7797473 7797473 G C CAMTA1 Missense_Mutation p.Q1167H 0.09 deleterious(0.04) probably_damaging(0.993) TCGA-50-5066-01 1 89656943 89656943 C A GBP4 Splice_Site p.X306_splice 0.14 TCGA-50-5066-01 1 89733118 89733118 C G GBP5 Missense_Mutation p.G137A 0.07 deleterious(0.01) benign(0.063) TCGA-50-5066-01 20 10030169 10030169 G T ANKEF1 Missense_Mutation p.A318S 0.12 tolerated(0.17) benign(0.248) TCGA-50-5066-01 20 20392725 20392725 C A RALGAPA2 Missense_Mutation p.D1855Y 0.14 deleterious(0) possibly_damaging(0.841) TCGA-50-5066-01 20 23476619 23476619 G C CST8 3'UTR 0.18 TCGA-50-5066-01 20 30408223 30408223 G T MYLK2 Missense_Mutation p.G116V 0.11 tolerated_low_confidence(0.05) benign(0.092) TCGA-50-5066-01 20 31643259 31643259 C T BPIFB3 Silent p.S10S 0.07 TCGA-50-5066-01 20 3673237 3673237 C A SIGLEC1 Missense_Mutation p.A1321S 0.32 tolerated(0.27) possibly_damaging(0.767) TCGA-50-5066-01 20 43386379 43386379 C A RIMS4 Missense_Mutation p.G129V 0.18 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-50-5066-01 20 45003068 45003068 C A ELMO2 Missense_Mutation p.E394D 0.12 deleterious(0) probably_damaging(0.967) TCGA-50-5066-01 20 47990687 47990687 C A KCNB1 Missense_Mutation p.E470D 0.11 tolerated(0.33) benign(0.008) TCGA-50-5066-01 20 51871474 51871474 G A TSHZ2 Missense_Mutation p.D493N 0.15 tolerated(0.13) possibly_damaging(0.856) TCGA-50-5066-01 20 53260092 53260092 C A DOK5 Missense_Mutation p.S277R 0.26 deleterious_low_confidence(0) possibly_damaging(0.756) TCGA-50-5066-01 22 19799918 19799918 C A GNB1L Missense_Mutation p.A103S 0.14 tolerated(0.82) benign(0.008) TCGA-50-5066-01 22 21800489 21800489 G T HIC2 Silent p.V435V 0.06 TCGA-50-5066-01 22 23011073 23011073 C A IGLV3-27 Missense_Mutation p.L46M 0.16 deleterious(0.03) possibly_damaging(0.701) TCGA-50-5066-01 22 23401638 23401638 G A RTDR1 3'UTR 0.20 TCGA-50-5066-01 22 25158306 25158306 G A PIWIL3 Intron 0.13 TCGA-50-5066-01 22 26423476 26423476 C T MYO18B Silent p.S2512S 0.17 TCGA-50-5066-01 22 39529820 39529820 C T CBX7 3'UTR 0.21 TCGA-50-5066-01 2 113532837 113532837 G C IL1A Missense_Mutation p.P208R 0.17 deleterious(0) probably_damaging(0.974) TCGA-50-5066-01 2 133541071 133541071 A G NCKAP5 Silent p.L1105L 0.14 TCGA-50-5066-01 2 153000426 153000426 C T STAM2 Missense_Mutation p.V207M 0.11 deleterious(0) probably_damaging(0.999) TCGA-50-5066-01 2 168100378 168100378 G T XIRP2 Missense_Mutation p.V826F 0.05 possibly_damaging(0.745) TCGA-50-5066-01 2 172712358 172712358 C G SLC25A12 Missense_Mutation p.G104A 0.10 tolerated(0.06) benign(0.242) TCGA-50-5066-01 2 175618340 175618340 G T CHRNA1 Nonsense_Mutation p.Y248* 0.08 TCGA-50-5066-01 2 176794757 176794757 C G KIAA1715 Missense_Mutation p.V409L 0.16 tolerated_low_confidence(0.1) benign(0.035) TCGA-50-5066-01 2 179315752 179315752 G T PRKRA Silent p.S2S 0.18 TCGA-50-5066-01 2 180014089 180014089 T C SESTD1 Silent p.S172S 0.15 TCGA-50-5066-01 2 198948482 198948482 G T PLCL1 Missense_Mutation p.D81Y 0.20 deleterious(0.01) probably_damaging(1) TCGA-50-5066-01 2 200213787 200213787 C A SATB2 Missense_Mutation p.Q270H 0.14 tolerated(0.1) benign(0.141) TCGA-50-5066-01 2 220502499 220502499 G C SLC4A3 Missense_Mutation p.R938P 0.10 deleterious(0) probably_damaging(1) TCGA-50-5066-01 2 233321897 233321897 G C ALPI Missense_Mutation p.Q171H 0.14 deleterious(0.01) probably_damaging(0.95) TCGA-50-5066-01 2 234969059 234969059 T G SPP2 Missense_Mutation p.V127G 0.14 deleterious(0) probably_damaging(0.959) TCGA-50-5066-01 2 235951280 235951280 A T SH3BP4 Missense_Mutation p.R623W 0.14 deleterious(0) probably_damaging(1) TCGA-50-5066-01 2 241724517 241724517 C G KIF1A Missense_Mutation p.R203S 0.06 deleterious(0) probably_damaging(1) TCGA-50-5066-01 2 242814287 242814287 G T CXXC11 Missense_Mutation p.D194Y 0.19 tolerated(0.59) benign(0.02) TCGA-50-5066-01 2 27707890 27707890 T G IFT172 Missense_Mutation p.E97D 0.15 tolerated(0.19) benign(0.065) TCGA-50-5066-01 2 29247185 29247185 G T FAM179A Missense_Mutation p.V600L 0.25 deleterious(0) probably_damaging(0.99) TCGA-50-5066-01 2 3502845 3502845 C G ADI1 Silent p.T143T 0.12 TCGA-50-5066-01 2 36749417 36749417 C A CRIM1 Missense_Mutation p.P797T 0.12 deleterious(0) probably_damaging(0.998) TCGA-50-5066-01 2 39050300 39050300 G A DHX57 Silent p.D1042D 0.17 TCGA-50-5066-01 2 65540932 65540932 C T SPRED2 Silent p.E320E 0.21 TCGA-50-5066-01 2 69043458 69043458 C T ARHGAP25 Missense_Mutation p.P282L 0.08 deleterious(0) probably_damaging(0.987) TCGA-50-5066-01 2 73676241 73676241 C G ALMS1 Missense_Mutation p.L862V 0.15 benign(0.231) TCGA-50-5066-01 2 75278382 75278382 C T TACR1 Missense_Mutation p.D310N 0.05 tolerated(0.34) benign(0.043) TCGA-50-5066-01 2 8890429 8890429 C T KIDINS220 Missense_Mutation p.G1076E 0.18 deleterious(0.03) possibly_damaging(0.887) TCGA-50-5066-01 2 89399398 89399398 G T IGKV1-16 Missense_Mutation p.P102H 0.23 deleterious(0) probably_damaging(0.917) TCGA-50-5066-01 3 12183494 12183494 C T SYN2 Intron 0.12 TCGA-50-5066-01 3 12183496 12183496 G C SYN2 Intron 0.14 TCGA-50-5066-01 3 132198072 132198072 G A DNAJC13 Missense_Mutation p.C904Y 0.07 deleterious(0) possibly_damaging(0.862) TCGA-50-5066-01 3 138739120 138739120 C A PRR23B Silent p.L128L 0.14 TCGA-50-5066-01 3 160137168 160137168 T A SMC4 Missense_Mutation p.L565H 0.19 deleterious(0) possibly_damaging(0.589) TCGA-50-5066-01 3 183665138 183665138 C A ABCC5 Missense_Mutation p.G1130C 0.17 deleterious(0) probably_damaging(1) TCGA-50-5066-01 3 184910174 184910174 C A EHHADH Missense_Mutation p.G671V 0.21 deleterious(0) probably_damaging(1) TCGA-50-5066-01 3 19295179 19295179 C T KCNH8 Missense_Mutation p.A37V 0.15 tolerated(0.21) benign(0.206) TCGA-50-5066-01 3 197598394 197598394 C T LRCH3 3'UTR 0.09 TCGA-50-5066-01 3 2787250 2787250 G T CNTN4 Missense_Mutation p.R76L 0.08 deleterious(0.01) probably_damaging(0.956) TCGA-50-5066-01 3 32995942 32995942 C T CCR4 Missense_Mutation p.P343L 0.09 tolerated(0.55) benign(0.001) TCGA-50-5066-01 3 35748527 35748527 T A ARPP21 Missense_Mutation p.F250I 0.10 deleterious(0) benign(0.265) TCGA-50-5066-01 3 36779123 36779123 C A DCLK3 Missense_Mutation p.R343L 0.25 deleterious(0.01) benign(0.298) TCGA-50-5066-01 3 40468909 40468909 G A ENTPD3 Silent p.L500L 0.10 TCGA-50-5066-01 3 44951735 44951735 T G TGM4 Missense_Mutation p.L494R 0.15 deleterious(0) possibly_damaging(0.898) TCGA-50-5066-01 3 51429993 51429993 A T RBM15B Missense_Mutation p.D388V 0.21 deleterious(0) benign(0.383) TCGA-50-5066-01 3 52185109 52185109 G A POC1A Missense_Mutation p.P9L 0.10 deleterious(0) probably_damaging(1) TCGA-50-5066-01 3 52540712 52540712 G T STAB1 Missense_Mutation p.R612L 0.25 deleterious(0) probably_damaging(0.993) TCGA-50-5066-01 3 54914873 54914873 A T CACNA2D3 Missense_Mutation p.N632I 0.11 deleterious(0) possibly_damaging(0.83) TCGA-50-5066-01 3 64527519 64527519 T C ADAMTS9 Missense_Mutation p.Y1731C 0.18 tolerated(0.15) possibly_damaging(0.895) TCGA-50-5066-01 3 95374304 95374304 C A MTHFD2P1 RNA 0.10 TCGA-50-5066-01 3 96706660 96706660 G T EPHA6 Missense_Mutation p.D313Y 0.17 deleterious(0) probably_damaging(0.957) TCGA-50-5066-01 4 100268947 100268947 C A ADH1C Missense_Mutation p.E25D 0.06 probably_damaging(0.986) TCGA-50-5066-01 4 104074252 104074252 T C CENPE Missense_Mutation p.I1063M 0.10 benign(0.098) TCGA-50-5066-01 4 113353354 113353354 G T ALPK1 Missense_Mutation p.R884M 0.12 tolerated(0.13) benign(0.008) TCGA-50-5066-01 4 126242334 126242334 T C FAT4 Silent p.L1590L 0.06 TCGA-50-5066-01 4 134073399 134073399 C A PCDH10 Missense_Mutation p.P702T 0.11 tolerated(0.07) benign(0.004) TCGA-50-5066-01 4 15627285 15627285 C A FBXL5 Missense_Mutation p.W480C 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-50-5066-01 4 15627406 15627406 G C FBXL5 Missense_Mutation p.S440C 0.18 tolerated_low_confidence(0.07) benign(0.345) TCGA-50-5066-01 4 23815782 23815782 T A PPARGC1A Nonsense_Mutation p.K442* 0.17 TCGA-50-5066-01 4 47322210 47322210 C A GABRB1 Silent p.T176T 0.23 TCGA-50-5066-01 4 47322211 47322211 C A GABRB1 Missense_Mutation p.L177M 0.23 deleterious(0) probably_damaging(0.969) TCGA-50-5066-01 4 55127425 55127425 C G PDGFRA Missense_Mutation p.I71M 0.18 tolerated(0.28) possibly_damaging(0.682) TCGA-50-5066-01 4 55955049 55955049 C G KDR Missense_Mutation p.A1166P 0.19 deleterious(0.03) probably_damaging(1) TCGA-50-5066-01 4 65188410 65188410 G T TECRL Silent p.T144T 0.24 TCGA-50-5066-01 4 68699044 68699044 G T TMPRSS11D Silent p.G190G 0.12 TCGA-50-5066-01 4 85623548 85623548 A - WDFY3 Frame_Shift_Del p.Y2852Ifs*14 0.24 TCGA-50-5066-01 4 87020 87020 C A Z95704.2 RNA 0.08 TCGA-50-5066-01 4 94138122 94138122 A T GRID2 Intron 0.26 TCGA-50-5066-01 4 957013 957013 G C DGKQ Silent p.L600L 0.27 TCGA-50-5066-01 5 1038187 1038187 C A NKD2 Missense_Mutation p.A352D 0.17 deleterious(0.03) possibly_damaging(0.667) TCGA-50-5066-01 5 1038188 1038188 C A NKD2 Silent p.A352A 0.17 TCGA-50-5066-01 5 1038314 1038314 G A NKD2 Silent p.S394S 0.20 TCGA-50-5066-01 5 11364914 11364914 G C CTNND2 Silent p.P422P 0.12 TCGA-50-5066-01 5 118469421 118469421 C T DMXL1 Missense_Mutation p.S601L 0.06 deleterious(0.03) benign(0.076) TCGA-50-5066-01 5 137013243 137013243 T G KLHL3 Silent p.S209S 0.06 TCGA-50-5066-01 5 140176239 140176239 G T PCDHA2 Missense_Mutation p.A564S 0.11 tolerated_low_confidence(0.1) benign(0.029) TCGA-50-5066-01 5 140531034 140531034 A T PCDHB6 Missense_Mutation p.Y399F 0.06 deleterious(0.04) benign(0.29) TCGA-50-5066-01 5 140603978 140603978 G T PCDHB14 Missense_Mutation p.V301F 0.21 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-50-5066-01 5 141336110 141336110 C T PCDH12 Missense_Mutation p.G436E 0.16 deleterious(0) probably_damaging(1) TCGA-50-5066-01 5 154271093 154271093 C T GEMIN5 Missense_Mutation p.E1324K 0.07 tolerated(0.26) benign(0.008) TCGA-50-5066-01 5 156533648 156533648 G T HAVCR2 Silent p.V128V 0.17 TCGA-50-5066-01 5 169446070 169446070 C T DOCK2 Silent p.D1113D 0.08 TCGA-50-5066-01 5 170883632 170883632 G A FGF18 Nonsense_Mutation p.W149* 0.08 TCGA-50-5066-01 5 180582367 180582367 G C OR2V2 Missense_Mutation p.C142S 0.07 deleterious(0) possibly_damaging(0.794) TCGA-50-5066-01 5 19503202 19503202 C G CDH18 Missense_Mutation p.S510T 0.08 tolerated(0.12) benign(0.001) TCGA-50-5066-01 5 21755753 21755753 C T CDH12 Missense_Mutation p.G611E 0.07 deleterious(0) possibly_damaging(0.876) TCGA-50-5066-01 5 23527423 23527423 C G PRDM9 Missense_Mutation p.H742Q 0.09 deleterious(0.03) probably_damaging(0.991) TCGA-50-5066-01 5 26915863 26915863 C A CDH9 Missense_Mutation p.R133I 0.17 tolerated(0.11) possibly_damaging(0.761) TCGA-50-5066-01 5 2748740 2748740 G A IRX2 Missense_Mutation p.A361V 0.22 tolerated(0.08) benign(0.014) TCGA-50-5066-01 5 33662024 33662024 G T ADAMTS12 Missense_Mutation p.T346N 0.15 deleterious(0) probably_damaging(0.999) TCGA-50-5066-01 5 35857028 35857028 A T IL7R 5'UTR 0.15 TCGA-50-5066-01 6 100061771 100061771 T G PRDM13 Nonsense_Mutation p.Y420* 0.29 TCGA-50-5066-01 6 110037721 110037721 A T FIG4 Missense_Mutation p.Q80L 0.15 tolerated(0.1) possibly_damaging(0.564) TCGA-50-5066-01 6 118588223 118588223 C A SLC35F1 Nonsense_Mutation p.Y181* 0.29 TCGA-50-5066-01 6 128294223 128294223 C G PTPRK Missense_Mutation p.V1411L 0.29 deleterious(0.01) benign(0.116) TCGA-50-5066-01 6 131927661 131927661 T G MED23 Missense_Mutation p.K442T 0.11 tolerated(0.47) benign(0.018) TCGA-50-5066-01 6 160543347 160543347 A G SLC22A1 Missense_Mutation p.Y127C 0.34 deleterious(0.01) possibly_damaging(0.744) TCGA-50-5066-01 6 29394972 29394972 G T OR11A1 Silent p.T149T 0.35 TCGA-50-5066-01 6 31698644 31698644 T A CLIC1 Missense_Mutation p.E234V 0.18 tolerated(0.15) benign(0.007) TCGA-50-5066-01 6 31797652 31797653 - G HSPA1B Frame_Shift_Ins 0.24 TCGA-50-5066-01 6 35085943 35085943 C T TCP11 3'UTR 0.27 TCGA-50-5066-01 6 41753093 41753093 C A PRICKLE4 Missense_Mutation p.P133T 0.10 tolerated(0.07) benign(0.192) TCGA-50-5066-01 6 4935956 4935956 A G CDYL Missense_Mutation p.H300R 0.07 deleterious(0.02) possibly_damaging(0.746) TCGA-50-5066-01 6 50683152 50683152 G T TFAP2D Silent p.A121A 0.30 TCGA-50-5066-01 6 55924883 55924883 C G COL21A1 Missense_Mutation p.L847F 0.20 tolerated(0.31) benign(0.011) TCGA-50-5066-01 6 7230298 7230298 G C RREB1 Missense_Mutation p.G656R 0.14 tolerated(0.09) probably_damaging(1) TCGA-50-5066-01 6 80634726 80634726 C A ELOVL4 Silent p.A104A 0.23 TCGA-50-5066-01 6 89895098 89895098 T C GABRR1 Missense_Mutation p.I243V 0.07 deleterious(0.04) probably_damaging(0.998) TCGA-50-5066-01 7 100680387 100680387 C T MUC17 Missense_Mutation p.P1897L 0.25 possibly_damaging(0.713) TCGA-50-5066-01 7 100731915 100731915 A T TRIM56 Missense_Mutation p.Q441L 0.16 tolerated_low_confidence(0.08) benign(0.079) TCGA-50-5066-01 7 107114603 107114603 C A GPR22 Missense_Mutation p.P33Q 0.26 tolerated(0.39) benign(0) TCGA-50-5066-01 7 112724196 112724196 A T GPR85 Missense_Mutation p.I194N 0.12 deleterious(0) probably_damaging(0.944) TCGA-50-5066-01 7 141727437 141727437 T A MGAM Missense_Mutation p.Y375N 0.16 deleterious(0) probably_damaging(1) TCGA-50-5066-01 7 141776013 141776013 C A MGAM Intron 0.12 TCGA-50-5066-01 7 142008792 142008792 G A TRBV3-1 Missense_Mutation p.D89N 0.28 tolerated(0.33) benign(0.208) TCGA-50-5066-01 7 142327036 142327036 A T TRBV19 Missense_Mutation p.S112C 0.12 deleterious(0) possibly_damaging(0.799) TCGA-50-5066-01 7 142458454 142458454 G A PRSS1 Missense_Mutation p.C30Y 0.11 deleterious(0) probably_damaging(1) TCGA-50-5066-01 7 149525007 149525007 G T SSPO RNA 0.08 TCGA-50-5066-01 7 150439330 150439330 A C GIMAP5 Missense_Mutation p.K35Q 0.17 deleterious(0) probably_damaging(0.97) TCGA-50-5066-01 7 157926523 157926523 C G PTPRN2 Missense_Mutation p.A468P 0.14 tolerated(0.25) benign(0.105) TCGA-50-5066-01 7 18535937 18535937 G T HDAC9 Missense_Mutation p.M4I 0.11 deleterious_low_confidence(0.03) benign(0.068) TCGA-50-5066-01 7 2740344 2740344 C A AMZ1 Silent p.R87R 0.38 TCGA-50-5066-01 7 35913313 35913313 G T SEPT7 Missense_Mutation p.R148L 0.31 deleterious(0.04) possibly_damaging(0.711) TCGA-50-5066-01 7 44801467 44801467 G T ZMIZ2 Missense_Mutation p.R520L 0.14 deleterious(0.03) possibly_damaging(0.635) TCGA-50-5066-01 7 53104055 53104055 C A POM121L12 Missense_Mutation p.P231T 0.22 deleterious(0) probably_damaging(0.958) TCGA-50-5066-01 7 55220240 55220240 G T EGFR Silent p.L210L 0.10 TCGA-50-5066-01 7 64167419 64167419 G T ZNF107 Missense_Mutation p.C246F 0.14 deleterious(0) probably_damaging(0.998) TCGA-50-5066-01 7 87190651 87190651 G T ABCB1 Missense_Mutation p.A252E 0.24 deleterious(0) probably_damaging(0.926) TCGA-50-5066-01 7 89983860 89983860 A T GTPBP10 Missense_Mutation p.I106L 0.14 tolerated(0.67) benign(0.026) TCGA-50-5066-01 7 94039035 94039035 G T COL1A2 Missense_Mutation p.G313C 0.09 unknown(0) TCGA-50-5066-01 8 103316347 103316347 C T UBR5 Missense_Mutation p.E960K 0.25 tolerated(0.39) probably_damaging(0.952) TCGA-50-5066-01 8 105105732 105105732 G T RIMS2 Intron 0.20 TCGA-50-5066-01 8 105263934 105263934 G T RIMS2 Missense_Mutation p.W1312C 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-50-5066-01 8 109797177 109797177 T C TMEM74 Missense_Mutation p.R51G 0.07 deleterious(0.03) benign(0.012) TCGA-50-5066-01 8 113277715 113277715 T C CSMD3 Missense_Mutation p.M3205V 0.09 deleterious(0) benign(0.196) TCGA-50-5066-01 8 116632237 116632237 C G TRPS1 Missense_Mutation p.E30Q 0.13 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-50-5066-01 8 125033871 125033871 C G FER1L6 Missense_Mutation p.Q699E 0.13 tolerated(0.07) benign(0.005) TCGA-50-5066-01 8 125113407 125113407 C - FER1L6 Frame_Shift_Del p.N1652Tfs*30 0.17 TCGA-50-5066-01 8 131130904 131130904 T C ASAP1 Missense_Mutation p.Y542C 0.16 deleterious(0) probably_damaging(0.928) TCGA-50-5066-01 8 139890019 139890019 C A COL22A1 Missense_Mutation p.G211V 0.08 unknown(0) TCGA-50-5066-01 8 144943470 144943470 C A EPPK1 Missense_Mutation p.G1318W 0.11 benign(0.008) TCGA-50-5066-01 8 146157289 146157289 C A ZNF16 Missense_Mutation p.C295F 0.10 deleterious(0) probably_damaging(0.989) TCGA-50-5066-01 8 146278737 146278737 C G C8orf33 Missense_Mutation p.P153R 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-50-5066-01 8 26238534 26238534 C T BNIP3L 5'Flank 0.14 TCGA-50-5066-01 8 30702510 30702510 C A TEX15 Missense_Mutation p.V1342L 0.18 tolerated(0.11) benign(0.013) TCGA-50-5066-01 8 41582018 41582018 G A ANK1 Nonsense_Mutation p.Q256* 0.29 TCGA-50-5066-01 8 49831549 49831549 T A SNAI2 Splice_Site p.X209_splice 0.10 TCGA-50-5066-01 8 51571223 51571223 G - SNTG1 Frame_Shift_Del 0.16 TCGA-50-5066-01 8 52320844 52320844 G A PXDNL Missense_Mutation p.P1114S 0.11 tolerated(0.14) benign(0.126) TCGA-50-5066-01 8 57079013 57079013 G T PLAG1 Missense_Mutation p.P431H 0.08 tolerated(0.11) possibly_damaging(0.452) TCGA-50-5066-01 8 63927973 63927973 T A GGH Missense_Mutation p.E292V 0.10 deleterious(0) probably_damaging(0.994) TCGA-50-5066-01 8 63985621 63985621 T A TTPA Missense_Mutation p.R77S 0.17 deleterious(0) probably_damaging(0.999) TCGA-50-5066-01 8 68139522 68139522 C A ARFGEF1 Missense_Mutation p.V1256F 0.22 deleterious(0) probably_damaging(0.995) TCGA-50-5066-01 8 72963077 72963077 T C TRPA1 Missense_Mutation p.H614R 0.08 tolerated(0.16) possibly_damaging(0.698) TCGA-50-5066-01 8 89128839 89128839 C T MMP16 Missense_Mutation p.R327Q 0.07 tolerated(0.31) benign(0.246) TCGA-50-5066-01 8 94805438 94805438 G T TMEM67 Missense_Mutation p.V530L 0.07 deleterious(0.01) probably_damaging(0.96) TCGA-50-5066-01 9 104152941 104152941 C A MRPL50 Missense_Mutation p.R95L 0.41 tolerated(0.21) benign(0.015) TCGA-50-5066-01 9 104309130 104309130 C T RNF20 Missense_Mutation p.T259I 0.22 deleterious(0.04) possibly_damaging(0.507) TCGA-50-5066-01 9 107288584 107288584 C A OR13C4 Missense_Mutation p.V303L 0.26 deleterious(0.01) probably_damaging(0.994) TCGA-50-5066-01 9 117086345 117086345 A T ORM1 Missense_Mutation p.E102V 0.22 deleterious(0) benign(0.082) TCGA-50-5066-01 9 117143439 117143439 A C AKNA Missense_Mutation p.F59V 0.18 deleterious(0) probably_damaging(0.998) TCGA-50-5066-01 9 122004412 122004412 C G BRINP1 Silent p.L164L 0.23 TCGA-50-5066-01 9 79117888 79117888 C G GCNT1 Silent p.L197L 0.28 TCGA-50-5066-01 9 79117986 79117986 T C GCNT1 Missense_Mutation p.V230A 0.18 deleterious(0) possibly_damaging(0.869) TCGA-50-5066-01 9 91262377 91262377 A G RP13-60M5.2 RNA 0.19 TCGA-50-5066-01 9 96312945 96312945 A T FAM120A Missense_Mutation p.Y749F 0.23 deleterious(0.02) benign(0.241) TCGA-50-5066-01 X 100548046 100548046 T A TAF7L 5'Flank 0.33 TCGA-50-5066-01 X 111698305 111698305 G T ZCCHC16 Missense_Mutation p.D117Y 0.31 tolerated(0.13) benign(0.063) TCGA-50-5066-01 X 127185488 127185488 C A ACTRT1 Missense_Mutation p.S233I 0.14 deleterious(0.04) benign(0) TCGA-50-5066-01 X 134292127 134292127 T A CT55 Missense_Mutation p.E178D 0.11 tolerated(1) benign(0.025) TCGA-50-5066-01 X 140953329 140953329 C A MAGEC3 Missense_Mutation p.L66M 0.35 deleterious_low_confidence(0) possibly_damaging(0.665) TCGA-50-5066-01 X 140953365 140953365 C A MAGEC3 Missense_Mutation p.L78I 0.12 deleterious_low_confidence(0) benign(0.364) TCGA-50-5066-01 X 144905986 144905986 C A SLITRK2 Missense_Mutation p.D681E 0.28 tolerated(1) benign(0.001) TCGA-50-5066-01 X 153220036 153220036 C A HCFC1 Missense_Mutation p.V1272L 0.15 tolerated_low_confidence(0.06) benign(0.003) TCGA-50-5066-01 X 50376446 50376446 T A SHROOM4 Missense_Mutation p.H876L 0.07 deleterious(0.01) possibly_damaging(0.548) TCGA-50-5066-01 X 79278684 79278684 C A TBX22 Missense_Mutation p.L101M 0.21 deleterious(0) probably_damaging(0.997) TCGA-50-5066-01 X 84558432 84558432 C A POF1B Missense_Mutation p.R543S 0.33 tolerated(0.65) possibly_damaging(0.506) TCGA-50-5068-01 10 105218098 105218098 T G CALHM1 Silent p.A137A 0.26 TCGA-50-5068-01 10 105890011 105890011 C T WDR96 Missense_Mutation p.M1628I 0.18 tolerated(0.21) benign(0.002) TCGA-50-5068-01 10 117093795 117093795 G C ATRNL1 Missense_Mutation p.C1014S 0.06 deleterious(0.03) probably_damaging(0.996) TCGA-50-5068-01 10 15714661 15714661 G T ITGA8 Missense_Mutation p.T255K 0.19 deleterious(0) probably_damaging(1) TCGA-50-5068-01 10 33015700 33015700 G T C10ORF68 Missense_Mutation p.V177L 0.27 tolerated(0.07) possibly_damaging(0.888) TCGA-50-5068-01 10 37438705 37438705 C A ANKRD30A Missense_Mutation p.P469T 0.12 tolerated(0.38) benign(0.002) TCGA-50-5068-01 10 48370489 48370489 C T ZNF488 5'UTR 0.15 TCGA-50-5068-01 10 74810876 74810876 C A P4HA1 Missense_Mutation p.A279S 0.15 tolerated(0.88) benign(0.001) TCGA-50-5068-01 10 7842009 7842009 A T ATP5C1 Missense_Mutation p.T198S 0.17 tolerated(0.07) possibly_damaging(0.533) TCGA-50-5068-01 10 85993891 85993891 G A LRIT1 Missense_Mutation p.T278I 0.13 tolerated(0.21) benign(0.189) TCGA-50-5068-01 11 44080129 44080129 C T ACCSL Missense_Mutation p.L502F 0.14 deleterious(0.04) probably_damaging(0.917) TCGA-50-5068-01 11 45246107 45246107 G T PRDM11 Missense_Mutation p.G361V 0.18 tolerated_low_confidence(0.11) benign(0.398) TCGA-50-5068-01 11 5842280 5842280 G A OR52N2 Missense_Mutation p.A239T 0.07 tolerated(0.44) possibly_damaging(0.764) TCGA-50-5068-01 11 61548502 61548502 C A MYRF Missense_Mutation p.P853T 0.26 tolerated_low_confidence(0.15) benign(0.004) TCGA-50-5068-01 11 6262815 6262815 G T CNGA4 Nonsense_Mutation p.E358* 0.12 TCGA-50-5068-01 11 71906939 71906939 A C FOLR1 Splice_Site p.X165_splice 0.18 TCGA-50-5068-01 11 86267641 86267641 C T ME3 Missense_Mutation p.V141M 0.11 deleterious(0) probably_damaging(1) TCGA-50-5068-01 12 122359392 122359392 G A WDR66 Missense_Mutation p.E61K 0.41 tolerated_low_confidence(0.22) benign(0) TCGA-50-5068-01 12 123801796 123801796 C G SBNO1 Missense_Mutation p.W969C 0.18 deleterious(0) probably_damaging(0.998) TCGA-50-5068-01 12 29624866 29624866 G T OVCH1 Silent p.I575I 0.43 TCGA-50-5068-01 12 44917237 44917242 CTGTGC - NELL2 In_Frame_Del p.R660_H661del 0.20 TCGA-50-5068-01 12 5021088 5021088 G A KCNA1 Missense_Mutation p.V182I 0.16 tolerated(0.32) probably_damaging(0.92) TCGA-50-5068-01 12 52567409 52567409 T G KRT80 Missense_Mutation p.E269A 0.18 deleterious(0) probably_damaging(1) TCGA-50-5068-01 12 72332682 72332682 C A TPH2 5'UTR 0.29 TCGA-50-5068-01 12 75444672 75444672 A C KCNC2 Silent p.L371L 0.20 TCGA-50-5068-01 12 78513025 78513025 G A NAV3 Missense_Mutation p.D1017N 0.23 deleterious(0.02) probably_damaging(0.988) TCGA-50-5068-01 12 85255320 85255320 C A SLC6A15 3'UTR 0.29 TCGA-50-5068-01 12 91502247 91502247 C T LUM Silent p.R170R 0.06 TCGA-50-5068-01 14 95056618 95056618 T A SERPINA5 Missense_Mutation p.L287Q 0.40 deleterious(0) probably_damaging(0.992) TCGA-50-5068-01 15 51040396 51040396 G C SPPL2A Missense_Mutation p.P122A 0.25 tolerated(0.1) benign(0.012) TCGA-50-5068-01 15 82574861 82574861 C A FAM154B Missense_Mutation p.R219S 0.19 deleterious(0) probably_damaging(0.922) TCGA-50-5068-01 16 2882201 2882201 G T ZG16B 3'UTR 0.10 TCGA-50-5068-01 16 31500054 31500054 G A SLC5A2 Missense_Mutation p.R414Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-50-5068-01 17 10428126 10428126 C A MYH2 Missense_Mutation p.R1640L 0.19 deleterious(0.01) benign(0.068) TCGA-50-5068-01 17 29661894 29661894 C - NF1 Frame_Shift_Del p.P1951Hfs*6 0.19 TCGA-50-5068-01 17 7578203 7578203 C T TP53 Missense_Mutation p.V216M 0.16 deleterious(0) probably_damaging(1) TCGA-50-5068-01 17 77709193 77709193 A T ENPP7 Missense_Mutation p.T251S 0.39 deleterious(0.01) possibly_damaging(0.536) TCGA-50-5068-01 18 29126289 29126289 T C DSG2 Silent p.A980A 0.31 TCGA-50-5068-01 18 70461611 70461611 C G NETO1 Missense_Mutation p.L166F 0.15 tolerated(0.13) benign(0.226) TCGA-50-5068-01 19 12575444 12575444 C A ZNF709 Missense_Mutation p.C431F 0.10 tolerated(0.7) benign(0.294) TCGA-50-5068-01 19 35849909 35849909 C T FFAR3 Silent p.F39F 0.09 TCGA-50-5068-01 19 38934235 38934235 G A RYR1 Missense_Mutation p.G103D 0.14 probably_damaging(1) TCGA-50-5068-01 19 43428869 43428869 C A PSG7 3'UTR 0.08 TCGA-50-5068-01 19 51532662 51532662 A G KLK12 Missense_Mutation p.S215P 0.09 deleterious(0) probably_damaging(0.999) TCGA-50-5068-01 19 53994017 53994017 C T ZNF813 Silent p.S177S 0.17 TCGA-50-5068-01 19 57286129 57286129 C A ZIM2 Missense_Mutation p.G504V 0.14 deleterious(0.03) probably_damaging(0.939) TCGA-50-5068-01 19 803637 803637 G T PTBP1 Splice_Site p.X39_splice 0.07 TCGA-50-5068-01 19 9491816 9491816 C T ZNF177 Missense_Mutation p.S270F 0.09 tolerated(0.16) probably_damaging(0.994) TCGA-50-5068-01 1 12907473 12907473 G C HNRNPCL1 Missense_Mutation p.Q224E 0.09 tolerated(0.31) benign(0.129) TCGA-50-5068-01 1 147096156 147096156 C A BCL9 Missense_Mutation p.P1226H 0.10 deleterious(0) probably_damaging(0.998) TCGA-50-5068-01 1 152538322 152538322 G A LCE3E 3'UTR 0.21 TCGA-50-5068-01 1 15834374 15834374 T A CASP9 Silent p.A149A 0.09 TCGA-50-5068-01 1 165389184 165389184 C T RXRG Missense_Mutation p.G122E 0.25 tolerated(0.34) probably_damaging(0.999) TCGA-50-5068-01 1 168260408 168260408 C T TBX19 Missense_Mutation p.P72S 0.16 deleterious(0.05) probably_damaging(1) TCGA-50-5068-01 1 171753362 171753362 C T METTL13 Silent p.F212F 0.20 TCGA-50-5068-01 1 173931109 173931109 G A RC3H1 Silent p.N652N 0.06 TCGA-50-5068-01 1 204379080 204379080 T C PPP1R15B Missense_Mutation p.Y487C 0.20 deleterious(0) probably_damaging(1) TCGA-50-5068-01 1 215259895 215259895 C A KCNK2 Silent p.A77A 0.13 TCGA-50-5068-01 1 230895275 230895275 G A CAPN9 Missense_Mutation p.A101T 0.11 deleterious(0) probably_damaging(0.982) TCGA-50-5068-01 1 23219500 23219500 C T EPHB2 Missense_Mutation p.R518C 0.22 deleterious(0.04) possibly_damaging(0.764) TCGA-50-5068-01 1 235295187 235295187 C A RBM34 Missense_Mutation p.K378N 0.17 deleterious(0.01) benign(0.152) TCGA-50-5068-01 1 238090307 238090307 G T RP11-193H5.1 RNA 0.15 TCGA-50-5068-01 1 247588207 247588207 G A NLRP3 Missense_Mutation p.D488N 0.17 deleterious(0) probably_damaging(0.949) TCGA-50-5068-01 1 32694336 32694336 C T EIF3I Silent p.D216D 0.04 TCGA-50-5068-01 1 62941485 62941485 G A DOCK7 Missense_Mutation p.R1921C 0.19 deleterious(0) probably_damaging(0.999) TCGA-50-5068-01 1 76251904 76251904 G A RABGGTB 5'UTR 0.24 TCGA-50-5068-01 1 77510030 77510030 G A ST6GALNAC5 Missense_Mutation p.V135M 0.15 probably_damaging(1) TCGA-50-5068-01 1 9064913 9064913 G T SLC2A7 Silent p.T406T 0.21 TCGA-50-5068-01 20 23064979 23064981 CTT - CD93 In_Frame_Del p.K617del 0.21 TCGA-50-5068-01 20 30037860 30037860 T C DEFB123 Silent p.Y29Y 0.13 TCGA-50-5068-01 20 39741460 39741460 G A TOP1 Silent p.R449R 0.16 TCGA-50-5068-01 20 46307439 46307439 T G SULF2 Missense_Mutation p.T392P 0.15 tolerated(0.29) possibly_damaging(0.698) TCGA-50-5068-01 20 57771017 57771017 C T ZNF831 Missense_Mutation p.R1278C 0.11 tolerated(0.1) benign(0.007) TCGA-50-5068-01 20 5843983 5843983 C A C20orf196 Silent p.S164S 0.15 TCGA-50-5068-01 20 62664298 62664298 C T PRPF6 Silent p.I926I 0.08 TCGA-50-5068-01 21 17205774 17205774 G C USP25 Missense_Mutation p.E701Q 0.15 tolerated(0.15) possibly_damaging(0.727) TCGA-50-5068-01 21 31913900 31913900 C A KRTAP19-6 3'UTR 0.16 TCGA-50-5068-01 22 18022446 18022446 G T CECR2 Missense_Mutation p.G851W 0.18 deleterious(0) probably_damaging(1) TCGA-50-5068-01 22 25601324 25601324 C T CRYBB3 Silent p.N155N 0.16 TCGA-50-5068-01 2 103061650 103061650 A G IL18RAP Missense_Mutation p.I308V 0.17 tolerated(0.73) benign(0.004) TCGA-50-5068-01 2 108488193 108488193 C A RGPD4 Missense_Mutation p.P1245T 0.04 tolerated(0.19) probably_damaging(0.999) TCGA-50-5068-01 2 113500284 113500284 T A CKAP2L Missense_Mutation p.E607D 0.32 tolerated(0.06) benign(0.126) TCGA-50-5068-01 2 131520541 131520541 C T AMER3 Missense_Mutation p.A299V 0.18 deleterious(0.03) probably_damaging(0.965) TCGA-50-5068-01 2 138414680 138414680 A G THSD7B Missense_Mutation p.N1445S 0.15 tolerated(0.2) unknown(0) TCGA-50-5068-01 2 168103381 168103381 A G XIRP2 Missense_Mutation p.T1827A 0.07 benign(0.018) TCGA-50-5068-01 2 168104724 168104724 C G XIRP2 Missense_Mutation p.I2274M 0.20 benign(0.149) TCGA-50-5068-01 2 179614019 179614020 - T TTN Intron 0.23 TCGA-50-5068-01 2 198948501 198948501 G A PLCL1 Missense_Mutation p.C87Y 0.12 tolerated(0.05) benign(0.078) TCGA-50-5068-01 2 222307631 222307631 C A EPHA4 Missense_Mutation p.R664S 0.06 deleterious(0) probably_damaging(0.971) TCGA-50-5068-01 2 241631275 241631275 C A AQP12A 5'UTR 0.24 TCGA-50-5068-01 2 33246130 33246130 C A LTBP1 Silent p.S240S 0.10 TCGA-50-5068-01 2 39281778 39281778 T A SOS1 Missense_Mutation p.N233Y 0.07 tolerated(1) possibly_damaging(0.621) TCGA-50-5068-01 2 8890421 8890421 A T KIDINS220 Missense_Mutation p.Y1079N 0.23 tolerated(0.05) probably_damaging(0.968) TCGA-50-5068-01 2 97529783 97529783 C A SEMA4C Missense_Mutation p.V404L 0.32 deleterious(0.01) possibly_damaging(0.583) TCGA-50-5068-01 3 2908581 2908581 G T CNTN4 Silent p.V200V 0.10 TCGA-50-5068-01 3 50145581 50145581 G A RBM5 Splice_Site p.X373_splice 0.13 TCGA-50-5068-01 3 50154766 50154766 G T RBM5 Missense_Mutation p.G759V 0.06 deleterious(0) probably_damaging(0.999) TCGA-50-5068-01 4 156631937 156631937 C T GUCY1A3 Missense_Mutation p.P207L 0.07 tolerated(0.05) probably_damaging(0.914) TCGA-50-5068-01 4 189064867 189064867 C A TRIML1 Intron 0.10 TCGA-50-5068-01 4 71464085 71464085 T C AMBN Silent p.L50L 0.07 TCGA-50-5068-01 5 176778623 176778623 C A LMAN2 Missense_Mutation p.R9L 0.12 tolerated_low_confidence(0.16) unknown(0) TCGA-50-5068-01 5 45396782 45396782 C T HCN1 Missense_Mutation p.A348T 0.14 deleterious(0) benign(0.202) TCGA-50-5068-01 5 7520955 7520955 C T ADCY2 Silent p.I171I 0.07 TCGA-50-5068-01 5 82834850 82834850 G T VCAN Missense_Mutation p.G2010C 0.14 deleterious(0) probably_damaging(0.996) TCGA-50-5068-01 5 82835757 82835757 G T VCAN Missense_Mutation p.G2312V 0.16 tolerated(0.1) benign(0.04) TCGA-50-5068-01 6 152615182 152615182 G C SYNE1 Silent p.S5921S 0.25 TCGA-50-5068-01 6 49754110 49754110 T G PGK2 Missense_Mutation p.K264T 0.05 deleterious(0.02) benign(0.043) TCGA-50-5068-01 6 70881870 70881870 A C COL19A1 Silent p.A861A 0.25 TCGA-50-5068-01 7 106508507 106508507 C T PIK3CG Silent p.N167N 0.11 TCGA-50-5068-01 7 122342159 122342159 T A RNF148 Nonsense_Mutation p.R216* 0.05 TCGA-50-5068-01 7 141740570 141740570 G A MGAM Missense_Mutation p.G808R 0.16 tolerated(0.39) benign(0.041) TCGA-50-5068-01 7 142723355 142723355 G A OR9A2 Missense_Mutation p.R289W 0.17 deleterious(0.03) benign(0.082) TCGA-50-5068-01 8 114326834 114326834 C T CSMD3 Missense_Mutation p.D123N 0.15 deleterious(0.04) possibly_damaging(0.696) TCGA-50-5068-01 8 114326898 114326898 A G CSMD3 Silent p.N101N 0.13 TCGA-50-5068-01 8 124998366 124998366 T C FER1L6 Missense_Mutation p.M490T 0.15 deleterious(0) possibly_damaging(0.501) TCGA-50-5068-01 8 28574075 28574075 G A EXTL3 Missense_Mutation p.G167S 0.21 tolerated(0.74) benign(0.001) TCGA-50-5068-01 9 120476501 120476501 G C TLR4 Missense_Mutation p.G699R 0.16 deleterious(0) probably_damaging(1) TCGA-50-5068-01 9 125330105 125330105 A G OR1L8 Missense_Mutation p.S218P 0.26 deleterious(0) probably_damaging(1) TCGA-50-5068-01 X 100601582 100601582 C T TIMM8A Missense_Mutation p.V67I 0.20 deleterious(0.04) benign(0.327) TCGA-50-5068-01 X 12736241 12736241 G T FRMPD4 Missense_Mutation p.G1099V 0.17 deleterious_low_confidence(0.02) benign(0.424) TCGA-50-5068-01 X 132161641 132161641 T C USP26 Missense_Mutation p.Y203C 0.22 tolerated(0.18) possibly_damaging(0.659) TCGA-50-5068-01 X 37028222 37028222 C - FAM47C Frame_Shift_Del p.H581Ifs*244 0.09 TCGA-50-5068-01 X 74288884 74288884 C A ABCB7 Silent p.V540V 0.18 TCGA-50-5072-01 10 126694533 126694533 G C CTBP2 Intron 0.29 TCGA-50-5072-01 10 134040457 134040457 G A STK32C Silent p.D162D 0.12 TCGA-50-5072-01 10 14996072 14996072 C A DCLRE1C 5'Flank 0.17 TCGA-50-5072-01 10 17636278 17636278 C A PTPLA Missense_Mutation p.R237I 0.23 tolerated(0.11) probably_damaging(0.999) TCGA-50-5072-01 10 18280171 18280171 G T SLC39A12 Missense_Mutation p.G454V 0.19 deleterious(0) probably_damaging(1) TCGA-50-5072-01 10 21101768 21101768 G A NEBL Silent p.V816V 0.22 TCGA-50-5072-01 10 46968629 46968629 G A SYT15 Missense_Mutation p.P103S 0.08 tolerated(0.17) benign(0.039) TCGA-50-5072-01 10 55566681 55566681 G T PCDH15 Silent p.S1568S 0.23 TCGA-50-5072-01 10 55943219 55943219 C T PCDH15 Silent p.G525G 0.19 TCGA-50-5072-01 10 88227091 88227091 A G WAPAL Missense_Mutation p.I772T 0.19 deleterious(0) possibly_damaging(0.527) TCGA-50-5072-01 10 97960807 97960807 T A BLNK Silent p.T314T 0.28 TCGA-50-5072-01 11 104901057 104901057 C A CASP1 Silent p.S209S 0.16 TCGA-50-5072-01 11 106558191 106558191 A C GUCY1A2 3'UTR 0.21 TCGA-50-5072-01 11 1266993 1266993 C A MUC5B Silent p.I2961I 0.13 TCGA-50-5072-01 11 1266994 1266994 C A MUC5B Missense_Mutation p.R2962S 0.13 unknown(0) TCGA-50-5072-01 11 14287127 14287127 G A RP11-21L19.1 Intron 0.12 TCGA-50-5072-01 11 18195148 18195148 C G MRGPRX4 Silent p.A115A 0.13 TCGA-50-5072-01 11 22380959 22380959 G T SLC17A6 Missense_Mutation p.R153S 0.16 deleterious(0.01) benign(0.183) TCGA-50-5072-01 11 319883 319883 A T IFITM3 Silent p.I119I 0.09 TCGA-50-5072-01 11 46750358 46750358 G T F2 Silent p.V481V 0.24 TCGA-50-5072-01 11 4869601 4869601 G T OR51S1 Missense_Mutation p.H280N 0.18 deleterious(0.03) possibly_damaging(0.505) TCGA-50-5072-01 11 4976475 4976475 G C OR51A2 Missense_Mutation p.L157V 0.39 tolerated(0.36) possibly_damaging(0.654) TCGA-50-5072-01 11 55873302 55873302 C A OR8H2 Missense_Mutation p.P262T 0.07 deleterious(0) probably_damaging(0.955) TCGA-50-5072-01 11 55873303 55873303 C A OR8H2 Missense_Mutation p.P262Q 0.06 deleterious(0.01) probably_damaging(0.982) TCGA-50-5072-01 11 55944199 55944199 G T OR5J2 Missense_Mutation p.A36S 0.16 tolerated(0.27) benign(0.007) TCGA-50-5072-01 11 56431534 56431534 G T OR5AR1 Missense_Mutation p.A125S 0.11 deleterious(0) possibly_damaging(0.46) TCGA-50-5072-01 11 58477979 58477979 G T GLYAT Intron 0.16 TCGA-50-5072-01 11 59559626 59559626 A G STX3 Missense_Mutation p.N135S 0.23 deleterious(0.04) probably_damaging(0.996) TCGA-50-5072-01 11 62287869 62287869 C A AHNAK Missense_Mutation p.V4674L 0.17 benign(0.177) TCGA-50-5072-01 11 6291371 6291371 T A CCKBR Missense_Mutation p.Y153N 0.18 deleterious(0) probably_damaging(0.999) TCGA-50-5072-01 11 6789736 6789736 C A OR2AG2 Silent p.L151L 0.21 TCGA-50-5072-01 11 71249653 71249653 G T KRTAP5-8 Missense_Mutation p.Q184H 0.21 deleterious(0.02) unknown(0) TCGA-50-5072-01 11 86662265 86662265 C T FZD4 Silent p.L511L 0.13 TCGA-50-5072-01 12 102036302 102036302 C G MYBPC1 Silent p.T232T 0.13 TCGA-50-5072-01 12 111951340 111951340 G A ATXN2 Missense_Mutation p.P620L 0.20 probably_damaging(0.999) TCGA-50-5072-01 12 113448306 113448306 G A OAS2 3'UTR 0.04 TCGA-50-5072-01 12 12630062 12630062 G A DUSP16 Missense_Mutation p.S568F 0.18 deleterious(0.01) possibly_damaging(0.736) TCGA-50-5072-01 12 12870966 12870966 C T CDKN1B Nonsense_Mutation p.Q65* 0.39 TCGA-50-5072-01 12 16757914 16757914 T G LMO3 Intron 0.12 TCGA-50-5072-01 12 23687401 23687401 C T SOX5 Missense_Mutation p.A682T 0.11 tolerated(1) benign(0.001) TCGA-50-5072-01 12 41831547 41831547 C A PDZRN4 Intron 0.36 TCGA-50-5072-01 12 57346753 57346753 C A RDH16 Silent p.G198G 0.39 TCGA-50-5072-01 12 69652445 69652445 A G CPSF6 Missense_Mutation p.Q257R 0.48 tolerated(0.15) unknown(0) TCGA-50-5072-01 14 20215981 20215981 G T OR4Q3 Missense_Mutation p.R132L 0.07 deleterious(0.01) benign(0.009) TCGA-50-5072-01 14 21876961 21876961 C T CHD8 Nonsense_Mutation p.W796* 0.18 TCGA-50-5072-01 14 44975251 44975251 C A FSCB Missense_Mutation p.V314F 0.16 tolerated(0.1) possibly_damaging(0.862) TCGA-50-5072-01 14 53133133 53133133 A T ERO1L Missense_Mutation p.W197R 0.15 tolerated(0.3) probably_damaging(1) TCGA-50-5072-01 14 58825910 58825911 - A ARID4A Frame_Shift_Ins p.Q641Tfs*6 0.23 TCGA-50-5072-01 14 60193922 60193922 C T RTN1 Missense_Mutation p.A494T 0.25 tolerated(0.41) benign(0.178) TCGA-50-5072-01 14 65417042 65417042 C A RAB15 Splice_Site p.X182_splice 0.22 TCGA-50-5072-01 14 67671600 67671600 G T FAM71D Nonsense_Mutation p.E236* 0.38 TCGA-50-5072-01 14 75279475 75279475 G A YLPM1 Missense_Mutation p.R1831K 0.24 probably_damaging(0.983) TCGA-50-5072-01 14 80668730 80668730 G T DIO2 3'Flank 0.25 TCGA-50-5072-01 14 90455406 90455415 CAGGAAAAAG - TDP1 Frame_Shift_Del p.G431Lfs*6 0.15 TCGA-50-5072-01 15 24921231 24921231 C A NPAP1 Missense_Mutation p.P73T 0.19 tolerated(0.06) possibly_damaging(0.803) TCGA-50-5072-01 15 24921232 24921232 C A NPAP1 Missense_Mutation p.P73H 0.19 deleterious(0.01) probably_damaging(0.95) TCGA-50-5072-01 15 24924229 24924229 G A NPAP1 Missense_Mutation p.G1072E 0.16 tolerated_low_confidence(0.2) benign(0.35) TCGA-50-5072-01 15 31819480 31819480 C A OTUD7A Silent p.V228V 0.21 TCGA-50-5072-01 15 33920772 33920772 G T RYR3 Missense_Mutation p.G892V 0.21 probably_damaging(1) TCGA-50-5072-01 15 51503033 51503033 C T CYP19A1 Missense_Mutation p.R495K 0.24 deleterious(0.01) benign(0.013) TCGA-50-5072-01 15 55489023 55489023 G A RSL24D1 Silent p.V22V 0.31 TCGA-50-5072-01 15 55653056 55653056 T A CCPG1 Silent p.T305T 0.29 TCGA-50-5072-01 15 65918051 65918051 C T SLC24A1 Missense_Mutation p.L545F 0.24 probably_damaging(0.961) TCGA-50-5072-01 15 74472410 74472410 C A STRA6 3'UTR 0.25 TCGA-50-5072-01 15 90347501 90347501 G A ANPEP Missense_Mutation p.H388Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-50-5072-01 15 91425068 91425073 GCGAGA - FURIN In_Frame_Del p.E783_R784del 0.17 TCGA-50-5072-01 16 19725912 19725912 T C KNOP1 Missense_Mutation p.K149R 0.28 deleterious(0.05) benign(0.058) TCGA-50-5072-01 16 21156636 21156636 C T DNAH3 Missense_Mutation p.G105E 0.21 tolerated_low_confidence(0.11) benign(0.015) TCGA-50-5072-01 16 22558349 22558349 G T RP11-368J21.3 RNA 0.10 TCGA-50-5072-01 16 23999883 23999883 C A PRKCB Missense_Mutation p.P87H 0.24 deleterious(0) probably_damaging(0.991) TCGA-50-5072-01 16 31476170 31476170 G A ARMC5 Missense_Mutation p.R609H 0.36 deleterious(0.04) benign(0.011) TCGA-50-5072-01 16 76350353 76350353 C T CNTNAP4 Silent p.S18S 0.19 TCGA-50-5072-01 16 87451247 87451247 T A ZCCHC14 Missense_Mutation p.H264L 0.16 deleterious(0.02) probably_damaging(0.913) TCGA-50-5072-01 17 11895767 11895767 C A ZNF18 Missense_Mutation p.W127L 0.42 tolerated(0.11) benign(0.133) TCGA-50-5072-01 17 29554590 29554590 T A NF1 Missense_Mutation p.L792H 0.52 tolerated(0.12) probably_damaging(0.993) TCGA-50-5072-01 17 60759205 60759205 G T MRC2 Missense_Mutation p.D904Y 0.32 deleterious(0) probably_damaging(1) TCGA-50-5072-01 17 80151979 80151979 C T CCDC57 Missense_Mutation p.E219K 0.47 tolerated(0.07) possibly_damaging(0.559) TCGA-50-5072-01 17 8159806 8159806 G T PFAS Intron 0.47 TCGA-50-5072-01 18 13884810 13884810 C T MC2R Silent p.V236V 0.19 TCGA-50-5072-01 18 21119878 21119878 C A NPC1 Missense_Mutation p.D898Y 0.20 deleterious(0) possibly_damaging(0.886) TCGA-50-5072-01 18 33694349 33694349 C A SLC39A6 Missense_Mutation p.M518I 0.17 tolerated(0.12) probably_damaging(0.998) TCGA-50-5072-01 18 3502639 3502639 G C DLGAP1 Missense_Mutation p.P859R 0.19 deleterious(0) probably_damaging(0.992) TCGA-50-5072-01 18 55269675 55269675 G A NARS Missense_Mutation p.S476L 0.16 deleterious(0) probably_damaging(1) TCGA-50-5072-01 18 61264451 61264451 G T SERPINB13 Nonsense_Mutation p.E344* 0.16 TCGA-50-5072-01 18 65181026 65181026 C A DSEL Missense_Mutation p.D284Y 0.11 tolerated(0.24) probably_damaging(0.996) TCGA-50-5072-01 18 66504350 66504350 G T CCDC102B Missense_Mutation p.R117M 0.14 deleterious(0) probably_damaging(0.999) TCGA-50-5072-01 19 11136141 11136141 T C SMARCA4 Missense_Mutation p.L1042P 0.43 probably_damaging(1) TCGA-50-5072-01 19 1218415 1218415 G T STK11 Splice_Site p.X97_splice 0.40 TCGA-50-5072-01 19 13941261 13941261 C - ZSWIM4 Frame_Shift_Del p.Q790Rfs*107 0.35 TCGA-50-5072-01 19 16942395 16942395 C T SIN3B Silent p.L106L 0.25 TCGA-50-5072-01 19 18235123 18235123 G C MAST3 Missense_Mutation p.V269L 0.27 deleterious(0) possibly_damaging(0.507) TCGA-50-5072-01 19 2191240 2191240 G T DOT1L Splice_Site p.X165_splice 0.34 TCGA-50-5072-01 19 23159103 23159103 C T ZNF728 Missense_Mutation p.G346S 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-50-5072-01 19 34868453 34868453 A G GPI Intron 0.24 TCGA-50-5072-01 19 36053478 36053478 T C ATP4A Silent p.P93P 0.24 TCGA-50-5072-01 19 37117732 37117732 C T ZNF382 Silent p.L311L 0.25 TCGA-50-5072-01 19 38126075 38126075 T C ZFP30 Missense_Mutation p.H456R 0.25 deleterious(0) probably_damaging(0.998) TCGA-50-5072-01 19 40420130 40420130 G A FCGBP Missense_Mutation p.A955V 0.09 probably_damaging(1) TCGA-50-5072-01 19 40581425 40581425 C A ZNF780A Missense_Mutation p.K309N 0.25 tolerated(0.09) possibly_damaging(0.845) TCGA-50-5072-01 19 41442419 41442419 C T CYP2B7P RNA 0.23 TCGA-50-5072-01 19 47585439 47585439 A T ZC3H4 Splice_Site p.X444_splice 0.31 TCGA-50-5072-01 19 4891298 4891298 G T ARRDC5 Missense_Mutation p.N263K 0.36 tolerated(0.63) benign(0.193) TCGA-50-5072-01 19 48922550 48922550 G T GRIN2D Missense_Mutation p.V599F 0.33 tolerated(0.16) probably_damaging(0.999) TCGA-50-5072-01 19 53762797 53762797 A G VN1R2 Missense_Mutation p.H390R 0.32 deleterious(0.01) benign(0.227) TCGA-50-5072-01 1 103431093 103431093 A T COL11A1 Missense_Mutation p.F956I 0.24 unknown(0) TCGA-50-5072-01 1 149858886 149858886 C T HIST2H2AC Missense_Mutation p.T121I 0.16 deleterious_low_confidence(0.01) benign(0.011) TCGA-50-5072-01 1 152079909 152079909 G C TCHH Missense_Mutation p.S1928R 0.04 benign(0.307) TCGA-50-5072-01 1 153043226 153043226 C A SPRR2B Silent p.P30P 0.10 TCGA-50-5072-01 1 156180134 156180134 C T SLC25A44 Missense_Mutation p.T286I 0.08 tolerated(0.57) benign(0.068) TCGA-50-5072-01 1 157805889 157805889 C A CD5L Nonsense_Mutation p.E38* 0.34 TCGA-50-5072-01 1 165398047 165398047 G T RXRG Missense_Mutation p.P69Q 0.10 deleterious(0) benign(0.44) TCGA-50-5072-01 1 181725171 181725171 A - CACNA1E Frame_Shift_Del p.N1357Tfs*7 0.27 TCGA-50-5072-01 1 182791305 182791305 A G NPL Missense_Mutation p.K237E 0.07 tolerated(0.1) benign(0.232) TCGA-50-5072-01 1 183923911 183923911 C G COLGALT2 Missense_Mutation p.K338N 0.10 deleterious(0.03) benign(0.439) TCGA-50-5072-01 1 196658660 196658660 G A CFH Missense_Mutation p.E359K 0.33 tolerated(0.44) benign(0.02) TCGA-50-5072-01 1 197404356 197404356 G T CRB1 Missense_Mutation p.Q1121H 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-50-5072-01 1 197404357 197404357 G T CRB1 Nonsense_Mutation p.E1122* 0.26 TCGA-50-5072-01 1 204943942 204943942 G A NFASC Missense_Mutation p.E517K 0.25 deleterious(0) probably_damaging(0.984) TCGA-50-5072-01 1 206772426 206772426 C T EIF2D Missense_Mutation p.G408D 0.12 tolerated(0.16) possibly_damaging(0.824) TCGA-50-5072-01 1 206821060 206821060 C T DYRK3 Missense_Mutation p.P173S 0.34 tolerated(0.79) probably_damaging(0.996) TCGA-50-5072-01 1 213445938 213445939 - T RPS6KC1 Frame_Shift_Ins p.T1057Yfs*22 0.10 TCGA-50-5072-01 1 220219803 220219803 A C EPRS 5'UTR 0.23 TCGA-50-5072-01 1 221055563 221055563 C T HLX Missense_Mutation p.S277L 0.31 deleterious(0) probably_damaging(0.992) TCGA-50-5072-01 1 248487582 248487582 A T OR2M7 Missense_Mutation p.C97S 0.39 deleterious(0) probably_damaging(0.984) TCGA-50-5072-01 1 44069145 44069145 A C PTPRF Missense_Mutation p.Y800S 0.20 deleterious(0.03) probably_damaging(0.98) TCGA-50-5072-01 1 62910726 62910726 C G USP1 Nonsense_Mutation p.S292* 0.29 TCGA-50-5072-01 1 65300251 65300251 T A JAK1 Missense_Mutation p.L1153F 0.08 deleterious_low_confidence(0.04) benign(0.065) TCGA-50-5072-01 1 79403965 79403965 C G ELTD1 Splice_Site p.X133_splice 0.33 TCGA-50-5072-01 20 34843634 34843634 G T AAR2 Silent p.V374V 0.26 TCGA-50-5072-01 20 34843635 34843635 G T AAR2 Missense_Mutation p.V375L 0.26 deleterious(0) probably_damaging(0.999) TCGA-50-5072-01 20 36869547 36869547 C A KIAA1755 Missense_Mutation p.G329V 0.31 tolerated(0.06) possibly_damaging(0.489) TCGA-50-5072-01 20 6033166 6033166 C T LRRN4 Missense_Mutation p.E94K 0.44 deleterious(0.01) possibly_damaging(0.755) TCGA-50-5072-01 21 15884835 15884835 G T SAMSN1 Silent p.T181T 0.19 TCGA-50-5072-01 22 32587001 32587001 C T RFPL2 Missense_Mutation p.V299I 0.09 deleterious(0.04) possibly_damaging(0.464) TCGA-50-5072-01 22 39122392 39122392 A T GTPBP1 Missense_Mutation p.M450L 0.21 tolerated(0.26) benign(0.075) TCGA-50-5072-01 22 42392949 42392949 C - SEPT3 Frame_Shift_Del p.C354Afs*46 0.23 TCGA-50-5072-01 22 50502513 50502513 C T MLC1 Missense_Mutation p.G337S 0.21 tolerated_low_confidence(0.13) benign(0.053) TCGA-50-5072-01 2 108489054 108489054 G T RGPD4 Missense_Mutation p.A1532S 0.19 tolerated(0.31) possibly_damaging(0.81) TCGA-50-5072-01 2 1499849 1499849 A G TPO Missense_Mutation p.T699A 0.11 deleterious(0.01) possibly_damaging(0.868) TCGA-50-5072-01 2 179433977 179433977 C G TTN Missense_Mutation p.D25628H 0.31 TCGA-50-5072-01 2 179577492 179577492 C A TTN Missense_Mutation p.G9087V 0.13 TCGA-50-5072-01 2 179588160 179588160 G - TTN Frame_Shift_Del p.R7223Vfs*4 0.23 TCGA-50-5072-01 2 196681573 196681573 A G DNAH7 Silent p.N3180N 0.16 TCGA-50-5072-01 2 216274436 216274436 G T FN1 Missense_Mutation p.P717T 0.12 deleterious(0.03) benign(0.105) TCGA-50-5072-01 2 228567010 228567010 T G SLC19A3 Missense_Mutation p.S9R 0.29 tolerated(0.25) benign(0.013) TCGA-50-5072-01 2 239237900 239237900 G T TRAF3IP1 Missense_Mutation p.D278Y 0.30 deleterious(0) possibly_damaging(0.751) TCGA-50-5072-01 2 27500725 27500725 G A DNAJC5G Missense_Mutation p.E73K 0.13 deleterious(0) probably_damaging(0.999) TCGA-50-5072-01 2 31147108 31147108 G T GALNT14 Silent p.I424I 0.18 TCGA-50-5072-01 2 80529683 80529683 T C LRRTM1 Missense_Mutation p.N421S 0.28 tolerated(0.37) benign(0.009) TCGA-50-5072-01 2 85768989 85768989 A T MAT2A Missense_Mutation p.E148V 0.13 deleterious(0) probably_damaging(1) TCGA-50-5072-01 2 88095324 88095324 C A RGPD2 Missense_Mutation p.W439C 0.28 deleterious(0) probably_damaging(0.974) TCGA-50-5072-01 2 8822244 8822244 G T ID2 5'UTR 0.43 TCGA-50-5072-01 3 100174871 100174871 G T LNP1 3'UTR 0.50 TCGA-50-5072-01 3 121351229 121351229 T G HCLS1 Missense_Mutation p.Y397S 0.24 deleterious(0.01) benign(0.403) TCGA-50-5072-01 3 125208251 125208251 C G SNX4 Splice_Site p.X218_splice 0.23 TCGA-50-5072-01 3 126916014 126916014 C A C3orf56 Silent p.A162A 0.37 TCGA-50-5072-01 3 134851590 134851590 C G EPHB1 Missense_Mutation p.I332M 0.23 tolerated(0.12) benign(0.112) TCGA-50-5072-01 3 138669576 138669576 T C C3orf72 3'UTR 0.27 TCGA-50-5072-01 3 164741524 164741524 C G SI Missense_Mutation p.R978T 0.25 tolerated(0.82) benign(0.001) TCGA-50-5072-01 3 187416668 187416668 C A RTP2 Missense_Mutation p.C99F 0.21 deleterious(0) probably_damaging(0.995) TCGA-50-5072-01 3 39166949 39166949 G C TTC21A Missense_Mutation p.E448Q 0.04 tolerated(0.27) benign(0.178) TCGA-50-5072-01 3 46490396 46490396 G T LTF Nonsense_Mutation p.C390* 0.36 TCGA-50-5072-01 3 48491469 48491469 G T ATRIP Missense_Mutation p.D92Y 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-50-5072-01 4 10446391 10446391 T A ZNF518B Missense_Mutation p.H521L 0.23 tolerated(0.53) benign(0.001) TCGA-50-5072-01 4 140640665 140640665 G A MAML3 Missense_Mutation p.P1077S 0.24 benign(0.004) TCGA-50-5072-01 4 146077104 146077104 G C OTUD4 Missense_Mutation p.P160R 0.18 tolerated(0.06) benign(0.286) TCGA-50-5072-01 4 154217122 154217122 G T TRIM2 Missense_Mutation p.A482S 0.17 tolerated(1) benign(0.007) TCGA-50-5072-01 4 183245345 183245345 C A TENM3 Missense_Mutation p.L58I 0.22 tolerated_low_confidence(0.39) possibly_damaging(0.694) TCGA-50-5072-01 4 187192834 187192834 G T F11 Missense_Mutation p.A43S 0.12 deleterious(0) possibly_damaging(0.907) TCGA-50-5072-01 4 69343154 69343154 G T TMPRSS11E Missense_Mutation p.G259C 0.14 deleterious(0.04) probably_damaging(0.961) TCGA-50-5072-01 4 71232648 71232648 T A SMR3A Silent p.P114P 0.33 TCGA-50-5072-01 5 114482982 114482982 G A TRIM36 Silent p.F136F 0.07 TCGA-50-5072-01 5 137844355 137844355 C T ETF1 Intron 0.22 TCGA-50-5072-01 5 140579865 140579865 G T PCDHB11 Missense_Mutation p.S173I 0.21 deleterious_low_confidence(0.02) benign(0.158) TCGA-50-5072-01 5 140589508 140589508 C T PCDHB12 Silent p.N343N 0.25 TCGA-50-5072-01 5 146997537 146997537 C A JAKMIP2 Missense_Mutation p.K761N 0.17 deleterious(0) possibly_damaging(0.544) TCGA-50-5072-01 5 169023598 169023599 TC - SPDL1 Frame_Shift_Del p.Q310Nfs*2 0.23 TCGA-50-5072-01 5 170833447 170833447 T C NPM1 Intron 0.19 TCGA-50-5072-01 5 179249978 179249978 G T SQSTM1 Missense_Mutation p.A76S 0.12 deleterious(0) possibly_damaging(0.843) TCGA-50-5072-01 5 41853613 41853613 T A OXCT1 Missense_Mutation p.I108L 0.07 tolerated(0.13) benign(0.282) TCGA-50-5072-01 6 111694531 111694531 T A REV3L Missense_Mutation p.K1676M 0.20 deleterious(0) probably_damaging(0.999) TCGA-50-5072-01 6 152605151 152605151 T A SYNE1 Missense_Mutation p.I6057F 0.20 possibly_damaging(0.611) TCGA-50-5072-01 6 169053663 169053663 T - SMOC2 Frame_Shift_Del p.L358Qfs*43 0.15 TCGA-50-5072-01 6 22569816 22569816 C T HDGFL1 Silent p.Y4Y 0.24 TCGA-50-5072-01 6 24146171 24146171 C T NRSN1 Silent p.T195T 0.07 TCGA-50-5072-01 6 24596749 24596749 G A KIAA0319 Silent p.T51T 0.19 TCGA-50-5072-01 6 47647861 47647861 A G GPR111 Missense_Mutation p.T176A 0.22 tolerated(0.78) benign(0.001) TCGA-50-5072-01 6 57512650 57512650 C A PRIM2 3'UTR 0.10 TCGA-50-5072-01 6 6167695 6167695 A T F13A1 Missense_Mutation p.I635N 0.22 deleterious(0) probably_damaging(0.923) TCGA-50-5072-01 6 7334277 7334277 T A CAGE1 Nonsense_Mutation p.R806* 0.21 TCGA-50-5072-01 6 75875304 75875304 C T COL12A1 Missense_Mutation p.E968K 0.16 probably_damaging(0.983) TCGA-50-5072-01 6 90472078 90472078 G A MDN1 Silent p.H772H 0.15 TCGA-50-5072-01 7 141727025 141727025 G T MGAM Nonsense_Mutation p.E365* 0.41 TCGA-50-5072-01 7 142458502 142458502 A T PRSS1 Missense_Mutation p.H46L 0.37 deleterious(0.02) benign(0.057) TCGA-50-5072-01 7 142880730 142880730 C A TAS2R39 Silent p.G73G 0.47 TCGA-50-5072-01 7 143018931 143018931 T C CLCN1 Missense_Mutation p.V229A 0.27 deleterious(0) probably_damaging(0.91) TCGA-50-5072-01 7 150934520 150934520 G A CHPF2 Missense_Mutation p.V358I 0.06 tolerated(0.99) benign(0.042) TCGA-50-5072-01 7 50513841 50513841 T C FIGNL1 Missense_Mutation p.K382R 0.26 tolerated(0.09) benign(0.003) TCGA-50-5072-01 7 55540620 55540620 C A VOPP1 Silent p.V149V 0.30 TCGA-50-5072-01 7 55863504 55863504 C A SEPT14 3'UTR 0.33 TCGA-50-5072-01 7 55980359 55980359 G T MRPS17 Splice_Site 0.26 TCGA-50-5072-01 7 77762279 77762279 G T MAGI2 Missense_Mutation p.P1044T 0.30 tolerated(0.1) benign(0.073) TCGA-50-5072-01 8 127569531 127569531 G T FAM84B Missense_Mutation p.S35Y 0.30 deleterious(0) probably_damaging(0.997) TCGA-50-5072-01 8 53044594 53044594 G A ST18 Nonsense_Mutation p.Q864* 0.27 TCGA-50-5072-01 8 67086790 67086790 A T TRIM55 Missense_Mutation p.I537F 0.04 deleterious_low_confidence(0) benign(0.068) TCGA-50-5072-01 9 107332316 107332316 A G OR13C8 Missense_Mutation p.M290V 0.29 deleterious(0.01) benign(0.156) TCGA-50-5072-01 9 130151342 130151342 C A GARNL3 Missense_Mutation p.S896Y 0.08 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-50-5072-01 9 133948700 133948700 C A LAMC3 Silent p.L1162L 0.34 TCGA-50-5072-01 9 70177584 70177584 T C FOXD4L5 Missense_Mutation p.I134V 0.14 deleterious(0) possibly_damaging(0.768) TCGA-50-5072-01 X 120008904 120008904 C A CT47B1 Silent p.V207V 0.09 TCGA-50-5072-01 X 135290072 135290072 G T FHL1 Silent p.V151V 0.37 TCGA-50-5072-01 X 151900216 151900216 G T MAGEA12 Silent p.I195I 0.35 TCGA-50-5072-01 X 3238683 3238683 G T MXRA5 Silent p.P1681P 0.40 TCGA-50-5930-01 10 101507079 101507079 G T CUTC Missense_Mutation p.V169L 0.20 tolerated(0.14) benign(0.093) TCGA-50-5930-01 10 102056933 102056933 G T PKD2L1 Missense_Mutation p.A330D 0.11 deleterious(0) probably_damaging(0.986) TCGA-50-5930-01 10 102120518 102120518 C A SCD Missense_Mutation p.S303Y 0.17 deleterious(0) possibly_damaging(0.797) TCGA-50-5930-01 10 103347022 103347022 T A POLL Missense_Mutation p.E32D 0.21 tolerated_low_confidence(0.17) benign(0.009) TCGA-50-5930-01 10 105203041 105203041 A T PDCD11 Missense_Mutation p.K1692I 0.15 deleterious(0.01) probably_damaging(0.922) TCGA-50-5930-01 10 105361476 105361476 C A SH3PXD2A 3'UTR 0.44 TCGA-50-5930-01 10 106982880 106982880 T A SORCS3 Missense_Mutation p.V914E 0.17 deleterious(0) possibly_damaging(0.845) TCGA-50-5930-01 10 111629746 111629746 C T XPNPEP1 Missense_Mutation p.E580K 0.07 deleterious(0) probably_damaging(1) TCGA-50-5930-01 10 112328695 112328695 G T SMC3 Splice_Site p.X6_splice 0.11 TCGA-50-5930-01 10 121671596 121671596 G - SEC23IP Frame_Shift_Del p.G412Afs*13 0.18 TCGA-50-5930-01 10 123260452 123260452 C A FGFR2 Silent p.L484L 0.17 TCGA-50-5930-01 10 127789731 127789731 T C ADAM12 Missense_Mutation p.Q277R 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-50-5930-01 10 129846028 129846028 G C PTPRE Missense_Mutation p.R70S 0.11 tolerated(0.17) benign(0.005) TCGA-50-5930-01 10 133106583 133106583 C T TCERG1L Silent p.G187G 0.16 TCGA-50-5930-01 10 133976883 133976883 G T JAKMIP3 Silent p.R795R 0.15 TCGA-50-5930-01 10 135209256 135209256 G T RP11-108K14.8 Missense_Mutation p.C56F 0.17 deleterious(0) probably_damaging(0.962) TCGA-50-5930-01 10 135341025 135341025 C T CYP2E1 Silent p.I42I 0.12 TCGA-50-5930-01 10 15091718 15091718 C A OLAH Silent p.S39S 0.11 TCGA-50-5930-01 10 15634292 15634292 G T ITGA8 Silent p.G741G 0.17 TCGA-50-5930-01 10 17362830 17362830 C A ST8SIA6 3'UTR 0.20 TCGA-50-5930-01 10 18155523 18155523 G A MRC1 Missense_Mutation p.G606R 0.31 deleterious(0) probably_damaging(1) TCGA-50-5930-01 10 23326361 23326361 C A ARMC3 Missense_Mutation p.L858M 0.20 deleterious(0.03) probably_damaging(1) TCGA-50-5930-01 10 24813540 24813540 C T KIAA1217 Silent p.S915S 0.19 TCGA-50-5930-01 10 25839989 25839989 G C GPR158 Missense_Mutation p.G497R 0.24 deleterious(0) probably_damaging(1) TCGA-50-5930-01 10 25887422 25887422 C G GPR158 Missense_Mutation p.P956R 0.16 tolerated(0.59) benign(0.258) TCGA-50-5930-01 10 26465716 26465716 G C MYO3A Silent p.L1460L 0.18 TCGA-50-5930-01 10 28884664 28884664 G A WAC Missense_Mutation p.E205K 0.22 tolerated(0.27) benign(0.3) TCGA-50-5930-01 10 35841976 35841976 A T CCNY Silent p.A203A 0.17 TCGA-50-5930-01 10 45953770 45953770 C A MARCH8 Nonsense_Mutation p.G265* 0.26 TCGA-50-5930-01 10 459875 459875 C T DIP2C Silent p.K345K 0.15 TCGA-50-5930-01 10 48388625 48388625 C A RBP3 Missense_Mutation p.M751I 0.20 tolerated(0.53) benign(0.072) TCGA-50-5930-01 10 49459706 49459706 G T FRMPD2 Silent p.A18A 0.32 TCGA-50-5930-01 10 50820269 50820269 G T SLC18A3 Missense_Mutation p.D495Y 0.12 deleterious(0.01) possibly_damaging(0.806) TCGA-50-5930-01 10 50916673 50916673 G T C10orf53 3'UTR 0.22 TCGA-50-5930-01 10 52913086 52913086 G C PRKG1 Missense_Mutation p.M158I 0.18 tolerated(0.27) benign(0.003) TCGA-50-5930-01 10 5541327 5541327 G T CALML5 Missense_Mutation p.N25K 0.12 deleterious(0) benign(0.206) TCGA-50-5930-01 10 5956210 5956210 G T FBXO18 Silent p.V509V 0.17 TCGA-50-5930-01 10 61115696 61115696 C G FAM13C Missense_Mutation p.E24Q 0.23 deleterious_low_confidence(0.02) probably_damaging(0.93) TCGA-50-5930-01 10 69571258 69571258 C A DNAJC12 Intron 0.21 TCGA-50-5930-01 10 69961730 69961730 C T MYPN Missense_Mutation p.P1213L 0.15 deleterious(0.01) possibly_damaging(0.842) TCGA-50-5930-01 10 70231545 70231545 C A DNA2 Intron 0.25 TCGA-50-5930-01 10 70404767 70404767 A - TET1 Frame_Shift_Del p.K761Nfs*34 0.17 TCGA-50-5930-01 10 72285843 72285843 A T PALD1 Missense_Mutation p.S46C 0.20 deleterious(0) probably_damaging(0.937) TCGA-50-5930-01 10 72299377 72299377 C A PALD1 Silent p.P589P 0.12 TCGA-50-5930-01 10 75519922 75519922 G T SEC24C Missense_Mutation p.A210S 0.13 tolerated(0.38) benign(0.004) TCGA-50-5930-01 10 7780631 7780631 T A ITIH2 Missense_Mutation p.W669R 0.21 tolerated(0.07) possibly_damaging(0.852) TCGA-50-5930-01 10 79579116 79579116 C T DLG5 Missense_Mutation p.A1212T 0.14 tolerated(0.14) benign(0.011) TCGA-50-5930-01 10 79769727 79769727 C A POLR3A Missense_Mutation p.K555N 0.26 deleterious(0.04) possibly_damaging(0.816) TCGA-50-5930-01 10 8006002 8006002 G T TAF3 Missense_Mutation p.G177C 0.10 tolerated(0.1) probably_damaging(0.91) TCGA-50-5930-01 10 82098193 82098193 A G DYDC1 Intron 0.09 TCGA-50-5930-01 10 82369177 82369177 C - SH2D4B Intron 0.15 TCGA-50-5930-01 10 88703740 88703740 C A MMRN2 Missense_Mutation p.E267D 0.17 deleterious(0.03) benign(0.132) TCGA-50-5930-01 10 90768739 90768739 G T FAS Missense_Mutation p.C143F 0.14 deleterious(0) probably_damaging(1) TCGA-50-5930-01 10 93244262 93244262 A C HECTD2 Splice_Site p.X274_splice 0.21 TCGA-50-5930-01 10 96260041 96260041 A T TBC1D12 Missense_Mutation p.K492N 0.08 deleterious(0.02) probably_damaging(0.984) TCGA-50-5930-01 10 97111089 97111089 C A SORBS1 Missense_Mutation p.E753D 0.10 deleterious(0) probably_damaging(0.974) TCGA-50-5930-01 10 98761095 98761095 C A SLIT1 Missense_Mutation p.R1460L 0.10 tolerated(0.17) benign(0.16) TCGA-50-5930-01 10 98819872 98819872 A T SLIT1 Missense_Mutation p.F329I 0.11 deleterious(0) probably_damaging(0.996) TCGA-50-5930-01 10 99350245 99350245 C G C10orf62 Missense_Mutation p.H197Q 0.11 tolerated(0.09) benign(0.151) TCGA-50-5930-01 10 99527378 99527378 G T SFRP5 Missense_Mutation p.R283S 0.15 deleterious(0.01) benign(0.111) TCGA-50-5930-01 11 101359749 101359749 C A TRPC6 Silent p.A404A 0.23 TCGA-50-5930-01 11 101834522 101834522 C T KIAA1377 Missense_Mutation p.P919L 0.21 tolerated(0.33) benign(0.079) TCGA-50-5930-01 11 103907872 103907872 C A DDI1 Missense_Mutation p.R108S 0.22 tolerated(0.54) benign(0.062) TCGA-50-5930-01 11 103908410 103908410 C A DDI1 Missense_Mutation p.A287D 0.16 deleterious(0.01) benign(0.259) TCGA-50-5930-01 11 104872926 104872926 G T CASP5 Silent p.I195I 0.19 TCGA-50-5930-01 11 106810676 106810676 T A GUCY1A2 Missense_Mutation p.Y239F 0.13 tolerated(0.49) benign(0.02) TCGA-50-5930-01 11 108059885 108059885 C A NPAT Silent p.S168S 0.11 TCGA-50-5930-01 11 111229633 111229633 C G POU2AF1 Silent p.P9P 0.22 TCGA-50-5930-01 11 114453675 114453675 A T NXPE4 Silent p.P55P 0.16 TCGA-50-5930-01 11 117308780 117308780 C A DSCAML1 Silent p.S1481S 0.33 TCGA-50-5930-01 11 117784608 117784608 C A TMPRSS13 Missense_Mutation p.W231C 0.13 deleterious(0.05) probably_damaging(0.973) TCGA-50-5930-01 11 119290794 119290794 G C THY1 Missense_Mutation p.P114A 0.16 tolerated(0.77) benign(0.001) TCGA-50-5930-01 11 120008435 120008435 T A TRIM29 Missense_Mutation p.K102M 0.17 deleterious(0) possibly_damaging(0.614) TCGA-50-5930-01 11 120008554 120008554 T A TRIM29 Silent p.P62P 0.13 TCGA-50-5930-01 11 120831643 120831643 T A GRIK4 Missense_Mutation p.S634T 0.20 deleterious(0) probably_damaging(0.995) TCGA-50-5930-01 11 121174133 121174133 G T SC5D Missense_Mutation p.V17L 0.19 tolerated(0.22) benign(0.007) TCGA-50-5930-01 11 123813817 123813817 C A OR6T1 Silent p.S243S 0.14 TCGA-50-5930-01 11 123814457 123814457 C A OR6T1 Missense_Mutation p.G30V 0.15 tolerated(1) benign(0.003) TCGA-50-5930-01 11 123886882 123886882 G T OR10G4 Missense_Mutation p.D201Y 0.14 deleterious(0) benign(0.389) TCGA-50-5930-01 11 124007855 124007855 G T VWA5A Missense_Mutation p.A587S 0.12 tolerated(0.09) benign(0.104) TCGA-50-5930-01 11 124180512 124180512 C A OR8D1 Missense_Mutation p.V51F 0.13 tolerated(0.12) benign(0.157) TCGA-50-5930-01 11 124180513 124180513 T A OR8D1 Silent p.A50A 0.15 TCGA-50-5930-01 11 124745223 124745223 C A ROBO3 Missense_Mutation p.P764T 0.12 tolerated(0.3) probably_damaging(0.999) TCGA-50-5930-01 11 124745224 124745224 C A ROBO3 Missense_Mutation p.P764H 0.12 tolerated(0.1) probably_damaging(0.999) TCGA-50-5930-01 11 124949013 124949013 T - SLC37A2 Frame_Shift_Del p.F108Lfs*58 0.22 TCGA-50-5930-01 11 17418839 17418839 T C ABCC8 Missense_Mutation p.M1297V 0.14 tolerated(1) benign(0) TCGA-50-5930-01 11 18111042 18111042 T A SAAL1 Missense_Mutation p.K202M 0.35 deleterious(0) probably_damaging(0.994) TCGA-50-5930-01 11 18735537 18735537 G C IGSF22 Missense_Mutation p.R653G 0.31 deleterious(0.01) possibly_damaging(0.642) TCGA-50-5930-01 11 1905217 1905217 T A LSP1 Missense_Mutation p.I313N 0.19 tolerated_low_confidence(0.17) benign(0.415) TCGA-50-5930-01 11 20067154 20067154 G T NAV2 Silent p.P1303P 0.13 TCGA-50-5930-01 11 22272336 22272336 C A ANO5 Missense_Mutation p.L355I 0.10 tolerated(0.1) possibly_damaging(0.849) TCGA-50-5930-01 11 25004823 25004823 C T LUZP2 Missense_Mutation p.A250V 0.10 tolerated(0.12) benign(0.109) TCGA-50-5930-01 11 26669355 26669355 A - ANO3 Frame_Shift_Del p.Y843Lfs*12 0.11 TCGA-50-5930-01 11 26725438 26725438 C A SLC5A12 Silent p.V194V 0.10 TCGA-50-5930-01 11 31128346 31128346 G T DCDC1 Nonsense_Mutation p.Y583* 0.14 TCGA-50-5930-01 11 32955433 32955433 G T QSER1 Missense_Mutation p.V748L 0.14 tolerated(0.38) benign(0.011) TCGA-50-5930-01 11 33768852 33768852 T A FBXO3 Missense_Mutation p.I355F 0.14 deleterious(0.02) benign(0.334) TCGA-50-5930-01 11 34118167 34118167 G A CAPRIN1 Missense_Mutation p.R616H 0.12 tolerated(0.05) possibly_damaging(0.806) TCGA-50-5930-01 11 35454293 35454293 G A PAMR1 Nonsense_Mutation p.Q609* 0.15 TCGA-50-5930-01 11 44069900 44069900 T C ACCSL Missense_Mutation p.V105A 0.13 tolerated(1) benign(0.003) TCGA-50-5930-01 11 45265775 45265775 T A SYT13 Missense_Mutation p.Q370L 0.11 tolerated(0.34) benign(0.063) TCGA-50-5930-01 11 45671423 45671423 G T CHST1 Silent p.R351R 0.11 TCGA-50-5930-01 11 45672434 45672434 C A CHST1 Missense_Mutation p.A14S 0.16 deleterious(0.04) possibly_damaging(0.637) TCGA-50-5930-01 11 46625367 46625367 C A HARBI1 Missense_Mutation p.A255S 0.21 tolerated(0.18) benign(0.393) TCGA-50-5930-01 11 47199559 47199559 C T PACSIN3 Missense_Mutation p.G400S 0.29 deleterious(0.04) probably_damaging(1) TCGA-50-5930-01 11 48161127 48161127 G T PTPRJ Missense_Mutation p.A748S 0.28 tolerated(1) benign(0.007) TCGA-50-5930-01 11 51412109 51412110 - T OR4A5 Frame_Shift_Ins p.M96Nfs*14 0.11 TCGA-50-5930-01 11 5363819 5363819 G A OR51B5 Silent p.T312T 0.16 TCGA-50-5930-01 11 5474855 5474855 T C OR51I2 Missense_Mutation p.L46P 0.30 deleterious(0) probably_damaging(0.999) TCGA-50-5930-01 11 55038555 55038555 A T TRIM48 3'UTR 0.35 TCGA-50-5930-01 11 55038556 55038556 T G TRIM48 3'UTR 0.33 TCGA-50-5930-01 11 55110929 55110929 T G OR4A16 Missense_Mutation p.C85G 0.15 tolerated_low_confidence(0.24) benign(0.008) TCGA-50-5930-01 11 55541464 55541464 C T OR5D13 Missense_Mutation p.S184F 0.11 deleterious(0.01) probably_damaging(0.935) TCGA-50-5930-01 11 55999927 55999927 G T OR5T2 Silent p.I245I 0.12 TCGA-50-5930-01 11 56237604 56237604 T A OR5M3 Missense_Mutation p.I124F 0.10 deleterious(0) probably_damaging(0.917) TCGA-50-5930-01 11 56468310 56468310 T C OR9G1 Silent p.C149C 0.07 TCGA-50-5930-01 11 57087681 57087681 C G TNKS1BP1 Missense_Mutation p.R200S 0.13 deleterious(0) probably_damaging(0.998) TCGA-50-5930-01 11 57175307 57175307 C A SLC43A3 Silent p.R478R 0.22 TCGA-50-5930-01 11 58035000 58035000 A T OR10W1 Missense_Mutation p.Y111N 0.11 deleterious(0) probably_damaging(0.969) TCGA-50-5930-01 11 5842352 5842352 A T OR52N2 Missense_Mutation p.T263S 0.28 tolerated(0.11) benign(0.284) TCGA-50-5930-01 11 58491927 58491927 C A GLYAT Nonsense_Mutation p.E15* 0.14 TCGA-50-5930-01 11 58604598 58604598 T C GLYATL2 Silent p.S122S 0.15 TCGA-50-5930-01 11 58711088 58711088 C A GLYATL1 Missense_Mutation p.L33M 0.12 deleterious(0.03) probably_damaging(0.996) TCGA-50-5930-01 11 59224758 59224758 G - OR4D6 Frame_Shift_Del p.A110Qfs*8 0.16 TCGA-50-5930-01 11 59480592 59480592 A G OR10V1 Missense_Mutation p.S243P 0.26 deleterious(0) probably_damaging(0.993) TCGA-50-5930-01 11 59623350 59623350 G T TCN1 Missense_Mutation p.S310Y 0.14 tolerated(0.99) benign(0.015) TCGA-50-5930-01 11 6008161 6008161 G T OR52L1 5'UTR 0.28 TCGA-50-5930-01 11 6023798 6023798 T A OR56A4 Missense_Mutation p.Q194L 0.17 tolerated(0.13) benign(0.062) TCGA-50-5930-01 11 6024195 6024195 C A OR56A4 Missense_Mutation p.A62S 0.18 tolerated(0.54) benign(0.004) TCGA-50-5930-01 11 6024196 6024196 A G OR56A4 Silent p.T61T 0.18 TCGA-50-5930-01 11 61726970 61726970 G A BEST1 Missense_Mutation p.V230M 0.18 deleterious(0) probably_damaging(0.999) TCGA-50-5930-01 11 63071686 63071686 C A SLC22A10 Silent p.L464L 0.12 TCGA-50-5930-01 11 64359291 64359291 G T SLC22A12 Missense_Mutation p.C88F 0.10 deleterious(0) probably_damaging(0.914) TCGA-50-5930-01 11 64514810 64514810 T C PYGM Missense_Mutation p.Y733C 0.23 tolerated(0.05) benign(0.195) TCGA-50-5930-01 11 64534698 64534698 C A SF1 Silent p.V581V 0.19 TCGA-50-5930-01 11 65268714 65268714 G T MALAT1 RNA 0.28 TCGA-50-5930-01 11 65402565 65402565 G T PCNXL3 Missense_Mutation p.V1643F 0.23 deleterious(0.02) benign(0.098) TCGA-50-5930-01 11 66272139 66272139 A T DPP3 Silent p.A645A 0.18 TCGA-50-5930-01 11 6637614 6637614 T C TPP1 Missense_Mutation p.Y336C 0.17 deleterious(0) probably_damaging(0.999) TCGA-50-5930-01 11 66472275 66472275 C A SPTBN2 Missense_Mutation p.Q824H 0.25 tolerated(0.08) possibly_damaging(0.478) TCGA-50-5930-01 11 7021684 7021684 T C ZNF214 Silent p.G410G 0.19 TCGA-50-5930-01 11 7064894 7064894 G A NLRP14 Missense_Mutation p.R546K 0.20 tolerated(0.68) benign(0) TCGA-50-5930-01 11 71942060 71942060 G T INPPL1 Missense_Mutation p.V442L 0.31 tolerated(1) benign(0.005) TCGA-50-5930-01 11 72290637 72290637 G T PDE2A Missense_Mutation p.Q733K 0.21 deleterious(0) probably_damaging(1) TCGA-50-5930-01 11 73008276 73008276 C T P2RY6 Missense_Mutation p.A238V 0.21 tolerated(0.76) benign(0.045) TCGA-50-5930-01 11 74421994 74421994 C G CHRDL2 Missense_Mutation p.C111S 0.14 deleterious(0) probably_damaging(0.999) TCGA-50-5930-01 11 75599907 75599907 G T UVRAG Missense_Mutation p.G156V 0.22 deleterious(0) probably_damaging(0.997) TCGA-50-5930-01 11 77413235 77413235 C A RSF1 Nonsense_Mutation p.E347* 0.32 TCGA-50-5930-01 11 82561393 82561393 C A PRCP Missense_Mutation p.R210M 0.19 deleterious(0) probably_damaging(1) TCGA-50-5930-01 11 85396449 85396449 T A CCDC89 Missense_Mutation p.Q242L 0.23 deleterious(0.01) benign(0.234) TCGA-50-5930-01 11 8732780 8732780 T A ST5 Splice_Site p.X725_splice 0.26 TCGA-50-5930-01 11 92526143 92526143 G C FAT3 Missense_Mutation p.G1608R 0.22 probably_damaging(1) TCGA-50-5930-01 11 93127755 93127755 C A CCDC67 Missense_Mutation p.A391D 0.11 deleterious(0) probably_damaging(1) TCGA-50-5930-01 11 93834418 93834418 C G HEPHL1 Missense_Mutation p.A831G 0.11 deleterious(0.02) possibly_damaging(0.666) TCGA-50-5930-01 11 94040634 94040634 C A FOLR4 Missense_Mutation p.H170N 0.15 tolerated(0.58) benign(0.242) TCGA-50-5930-01 12 100444044 100444044 C A UHRF1BP1L Missense_Mutation p.R1207L 0.12 deleterious(0.01) benign(0.158) TCGA-50-5930-01 12 101581265 101581265 A G SLC5A8 Missense_Mutation p.W288R 0.23 deleterious(0.01) probably_damaging(0.971) TCGA-50-5930-01 12 102813372 102813372 T A IGF1 Missense_Mutation p.E106V 0.13 deleterious(0) probably_damaging(1) TCGA-50-5930-01 12 106460709 106460709 C A NUAK1 Silent p.R619R 0.16 TCGA-50-5930-01 12 108169004 108169004 G T ASCL4 Silent p.T4T 0.12 TCGA-50-5930-01 12 109046123 109046123 C A CORO1C Missense_Mutation p.S309I 0.17 tolerated(0.15) possibly_damaging(0.756) TCGA-50-5930-01 12 120135607 120135607 C A CIT Silent p.P1913P 0.14 TCGA-50-5930-01 12 122107286 122107286 C T MORN3 Missense_Mutation p.G35D 0.16 deleterious(0.01) possibly_damaging(0.621) TCGA-50-5930-01 12 123738289 123738289 T C C12orf65 Missense_Mutation p.L23P 0.11 tolerated(0.16) benign(0.007) TCGA-50-5930-01 12 123983148 123983148 C T RILPL1 Silent p.G248G 0.16 TCGA-50-5930-01 12 124856713 124856713 C A NCOR2 Nonsense_Mutation p.E888* 0.18 TCGA-50-5930-01 12 125613888 125613888 G T AACS Silent p.A477A 0.14 TCGA-50-5930-01 12 132466874 132466874 G A EP400 Missense_Mutation p.V594M 0.17 unknown(0) TCGA-50-5930-01 12 20806889 20806889 A T PDE3A Missense_Mutation p.E978D 0.21 deleterious(0) possibly_damaging(0.627) TCGA-50-5930-01 12 21713403 21713403 C A GYS2 Silent p.V362V 0.19 TCGA-50-5930-01 12 25002779 25002779 C A BCAT1 Missense_Mutation p.W217C 0.15 tolerated(0.05) probably_damaging(0.974) TCGA-50-5930-01 12 27181376 27181376 G T MED21 Missense_Mutation p.Q139H 0.15 deleterious_low_confidence(0.02) benign(0.004) TCGA-50-5930-01 12 27468245 27468245 A T STK38L Missense_Mutation p.R267W 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-50-5930-01 12 29486595 29486595 T C FAR2 Silent p.T472T 0.16 TCGA-50-5930-01 12 3647808 3647808 T A PRMT8 Intron 0.16 TCGA-50-5930-01 12 3647809 3647809 C T PRMT8 Intron 0.16 TCGA-50-5930-01 12 3788164 3788164 C T EFCAB4B Silent p.E147E 0.14 TCGA-50-5930-01 12 39223207 39223207 C A CPNE8 Missense_Mutation p.Q127H 0.13 tolerated(0.17) benign(0.001) TCGA-50-5930-01 12 40012998 40012998 A T ABCD2 Silent p.P140P 0.08 TCGA-50-5930-01 12 40044048 40044048 C T C12orf40 Missense_Mutation p.T193I 0.21 deleterious(0.01) benign(0.06) TCGA-50-5930-01 12 40671810 40671810 G A LRRK2 Missense_Mutation p.D688N 0.12 tolerated(0.37) benign(0.03) TCGA-50-5930-01 12 40758647 40758647 G T LRRK2 Missense_Mutation p.E2395D 0.17 tolerated(0.4) benign(0.008) TCGA-50-5930-01 12 41386967 41386967 A T CNTN1 Missense_Mutation p.D670V 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-50-5930-01 12 41831667 41831667 G T PDZRN4 Intron 0.17 TCGA-50-5930-01 12 49392080 49392080 C G DDN Missense_Mutation p.W193C 0.40 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-50-5930-01 12 50367274 50367274 C A AQP6 Silent p.A106A 0.22 TCGA-50-5930-01 12 51675226 51675226 T C BIN2 3'UTR 0.22 TCGA-50-5930-01 12 51737586 51737586 T C CELA1 Missense_Mutation p.T51A 0.19 deleterious(0.01) possibly_damaging(0.813) TCGA-50-5930-01 12 52162774 52162774 C A SCN8A Silent p.A1009A 0.26 TCGA-50-5930-01 12 52776827 52776827 G T KRT84 Silent p.R260R 0.18 TCGA-50-5930-01 12 52981414 52981414 C A KRT72 Splice_Site p.X437_splice 0.16 TCGA-50-5930-01 12 53002214 53002214 G T KRT73 Silent p.A463A 0.22 TCGA-50-5930-01 12 53012078 53012078 C A KRT73 Silent p.R77R 0.12 TCGA-50-5930-01 12 53227961 53227961 C A KRT79 Missense_Mutation p.Q28H 0.12 tolerated(0.18) benign(0.133) TCGA-50-5930-01 12 54405184 54405184 C A HOXC8 3'UTR 0.18 TCGA-50-5930-01 12 54689058 54689058 G C NFE2 5'UTR 0.29 TCGA-50-5930-01 12 54920357 54920357 C G NCKAP1L Missense_Mutation p.I734M 0.18 deleterious(0) probably_damaging(0.98) TCGA-50-5930-01 12 55641297 55641297 A G OR6C74 Missense_Mutation p.I76V 0.20 tolerated_low_confidence(0.07) benign(0.047) TCGA-50-5930-01 12 55820221 55820221 A T OR6C76 Missense_Mutation p.R62W 0.22 deleterious_low_confidence(0.02) probably_damaging(0.98) TCGA-50-5930-01 12 56347571 56347571 C A DGKA 3'UTR 0.16 TCGA-50-5930-01 12 56815200 56815200 C A TIMELESS Missense_Mutation p.G935W 0.19 deleterious(0) probably_damaging(1) TCGA-50-5930-01 12 57569296 57569296 G T LRP1 Missense_Mutation p.G1201C 0.16 probably_damaging(0.969) TCGA-50-5930-01 12 57960938 57960938 G T KIF5A Silent p.P177P 0.19 TCGA-50-5930-01 12 58350590 58350590 G T XRCC6BP1 Nonsense_Mutation p.G220* 0.15 TCGA-50-5930-01 12 62929418 62929418 A T MON2 Missense_Mutation p.K610I 0.08 deleterious(0) probably_damaging(0.998) TCGA-50-5930-01 12 64377777 64377777 G T SRGAP1 Nonsense_Mutation p.E40* 0.18 TCGA-50-5930-01 12 64609492 64609492 G A C12orf66 Missense_Mutation p.L163F 0.07 tolerated(0.67) benign(0.052) TCGA-50-5930-01 12 66838452 66838452 T A GRIP1 Missense_Mutation p.E481D 0.13 deleterious(0.04) possibly_damaging(0.58) TCGA-50-5930-01 12 6806547 6806547 G T PIANP Silent p.P143P 0.19 TCGA-50-5930-01 12 6924062 6924062 G T CD4 Missense_Mutation p.V171L 0.19 tolerated(1) benign(0.012) TCGA-50-5930-01 12 6965877 6965877 G T USP5 Missense_Mutation p.W197C 0.16 deleterious(0) probably_damaging(0.917) TCGA-50-5930-01 12 7027203 7027203 A C ENO2 Missense_Mutation p.M182L 0.17 tolerated_low_confidence(0.27) benign(0.216) TCGA-50-5930-01 12 7053660 7053660 A T C12orf57 Missense_Mutation p.Q25L 0.30 tolerated(0.26) benign(0.082) TCGA-50-5930-01 12 71977998 71977998 C T LGR5 Silent p.C736C 0.17 TCGA-50-5930-01 12 72036326 72036326 T A ZFC3H1 Missense_Mutation p.D506V 0.15 deleterious(0) probably_damaging(0.997) TCGA-50-5930-01 12 75741499 75741499 C A GLIPR1L1 Missense_Mutation p.P173H 0.15 deleterious(0) probably_damaging(1) TCGA-50-5930-01 12 7637980 7637980 T G CD163 Missense_Mutation p.S831R 0.22 tolerated(0.28) possibly_damaging(0.694) TCGA-50-5930-01 12 7647899 7647899 T C CD163 Missense_Mutation p.R400G 0.24 tolerated(0.31) benign(0.41) TCGA-50-5930-01 12 7982364 7982364 G T SLC2A14 Missense_Mutation p.Q194K 0.14 deleterious(0.01) probably_damaging(0.973) TCGA-50-5930-01 12 80665571 80665571 G A OTOGL Missense_Mutation p.G879S 0.21 deleterious(0) probably_damaging(1) TCGA-50-5930-01 12 80752552 80752552 T A OTOGL Missense_Mutation p.C2066S 0.08 deleterious(0) probably_damaging(0.999) TCGA-50-5930-01 12 81101590 81101590 C A MYF6 Missense_Mutation p.S31Y 0.21 deleterious(0) probably_damaging(0.996) TCGA-50-5930-01 12 81503375 81503375 C T ACSS3 Silent p.A116A 0.16 TCGA-50-5930-01 12 8813495 8813495 C A MFAP5 Splice_Site p.X20_splice 0.15 TCGA-50-5930-01 12 88912495 88912495 G C KITLG Missense_Mutation p.C114W 0.21 deleterious(0) probably_damaging(1) TCGA-50-5930-01 12 91502039 91502039 C A LUM Nonsense_Mutation p.E240* 0.18 TCGA-50-5930-01 12 95604073 95604073 C A FGD6 Missense_Mutation p.K329N 0.21 tolerated_low_confidence(0.42) benign(0.197) TCGA-50-5930-01 12 96282278 96282278 G T CCDC38 Missense_Mutation p.P293Q 0.17 tolerated(0.22) benign(0.003) TCGA-50-5930-01 12 96350574 96350574 C A AMDHD1 Silent p.R141R 0.17 TCGA-50-5930-01 12 96379715 96379715 C T HAL Missense_Mutation p.D393N 0.19 deleterious(0) probably_damaging(1) TCGA-50-5930-01 12 97311456 97311456 C T NEDD1 Silent p.L104L 0.12 TCGA-50-5930-01 12 99192734 99192734 T A ANKS1B Missense_Mutation p.Q1082L 0.16 deleterious(0) probably_damaging(0.911) TCGA-50-5930-01 13 101735162 101735162 C A NALCN Nonsense_Mutation p.E1255* 0.17 TCGA-50-5930-01 13 102379118 102379118 C - FGF14 Frame_Shift_Del p.E156Kfs*5 0.16 TCGA-50-5930-01 13 110960282 110960282 C A COL4A2 Missense_Mutation p.P11H 0.19 benign(0.051) TCGA-50-5930-01 13 114324004 114324004 T A GRK1 Silent p.G234G 0.08 TCGA-50-5930-01 13 21063591 21063591 G A CRYL1 Missense_Mutation p.S65F 0.27 deleterious_low_confidence(0) possibly_damaging(0.761) TCGA-50-5930-01 13 23905303 23905303 T A SACS Missense_Mutation p.S4238C 0.10 probably_damaging(0.993) TCGA-50-5930-01 13 31232392 31232392 G T USPL1 Missense_Mutation p.K726N 0.21 tolerated(0.12) benign(0.066) TCGA-50-5930-01 13 33629320 33629320 G T KL Missense_Mutation p.L489F 0.14 tolerated(0.18) benign(0.285) TCGA-50-5930-01 13 35517201 35517201 C T NBEA Nonsense_Mutation p.Q82* 0.14 TCGA-50-5930-01 13 37595648 37595648 G C SUPT20H Missense_Mutation p.L585V 0.11 tolerated(0.13) possibly_damaging(0.722) TCGA-50-5930-01 13 38211671 38211671 G T TRPC4 Nonsense_Mutation p.S773* 0.19 TCGA-50-5930-01 13 38225386 38225386 C G TRPC4 Splice_Site p.X698_splice 0.18 TCGA-50-5930-01 13 41941596 41941596 G T NAA16 Missense_Mutation p.D521Y 0.12 deleterious(0) probably_damaging(1) TCGA-50-5930-01 13 42783173 42783173 A T DGKH Missense_Mutation p.R894W 0.13 deleterious(0) probably_damaging(1) TCGA-50-5930-01 13 42793838 42793838 G C DGKH Missense_Mutation p.C1117S 0.16 tolerated(0.41) benign(0.004) TCGA-50-5930-01 13 45594511 45594511 A G GPALPP1 Missense_Mutation p.H251R 0.22 tolerated(0.36) benign(0) TCGA-50-5930-01 13 46103925 46103925 G T COG3 Splice_Site p.X744_splice 0.18 TCGA-50-5930-01 13 50204760 50204760 G A ARL11 Silent p.L59L 0.19 TCGA-50-5930-01 13 52549097 52549097 T A ATP7B Missense_Mutation p.I87F 0.17 tolerated(0.27) benign(0.016) TCGA-50-5930-01 13 53042424 53042424 G T CKAP2 Missense_Mutation p.E497D 0.10 deleterious(0.01) possibly_damaging(0.654) TCGA-50-5930-01 13 53603173 53603173 C A OLFM4 Missense_Mutation p.Q68K 0.10 tolerated(0.2) unknown(0) TCGA-50-5930-01 13 60384950 60384950 C T DIAPH3 Silent p.K1045K 0.11 TCGA-50-5930-01 13 61986977 61986977 C G PCDH20 Missense_Mutation p.V419L 0.21 tolerated(0.17) benign(0.003) TCGA-50-5930-01 13 76382292 76382292 G C LMO7 Missense_Mutation p.E392Q 0.22 deleterious(0) probably_damaging(0.98) TCGA-50-5930-01 13 76382301 76382301 A C LMO7 Silent p.R395R 0.20 TCGA-50-5930-01 13 77670575 77670575 C A MYCBP2 Missense_Mutation p.G3238W 0.09 probably_damaging(0.992) TCGA-50-5930-01 13 78477380 78477380 T C EDNRB Missense_Mutation p.I328V 0.30 tolerated(0.74) benign(0.008) TCGA-50-5930-01 13 95055406 95055406 G T GPC6 Missense_Mutation p.G535C 0.12 deleterious(0.02) benign(0.005) TCGA-50-5930-01 13 95121132 95121132 C A DCT Missense_Mutation p.D155Y 0.29 deleterious(0) probably_damaging(0.99) TCGA-50-5930-01 13 96506611 96506611 C G UGGT2 Missense_Mutation p.G1376A 0.06 deleterious(0) probably_damaging(1) TCGA-50-5930-01 13 97995355 97995355 G T MBNL2 Missense_Mutation p.G142V 0.39 deleterious(0.04) possibly_damaging(0.848) TCGA-50-5930-01 14 103440446 103440446 C G CDC42BPB Silent p.A516A 0.25 TCGA-50-5930-01 14 105406197 105406197 C A AHNAK2 Missense_Mutation p.M5197I 0.37 benign(0.07) TCGA-50-5930-01 14 105411363 105411363 C T AHNAK2 Missense_Mutation p.M3475I 0.30 benign(0.019) TCGA-50-5930-01 14 106586415 106586415 C A IGHV3-13 Missense_Mutation p.V24L 0.35 deleterious_low_confidence(0.05) benign(0.11) TCGA-50-5930-01 14 106733432 106733432 G T IGHV1-24 Silent p.V21V 0.38 TCGA-50-5930-01 14 106791175 106791175 C G IGHV3-30 Missense_Mutation p.G61R 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.537) TCGA-50-5930-01 14 107178958 107178958 A T IGHV2-70 Missense_Mutation p.D73E 0.39 tolerated(0.22) benign(0.009) TCGA-50-5930-01 14 20444458 20444458 C G OR4K15 Missense_Mutation p.R261G 0.25 deleterious(0.01) possibly_damaging(0.778) TCGA-50-5930-01 14 20483179 20483179 G C OR4K14 Silent p.S58S 0.17 TCGA-50-5930-01 14 20779879 20779879 G C CCNB1IP1 Missense_Mutation p.P222A 0.08 deleterious_low_confidence(0) benign(0.121) TCGA-50-5930-01 14 20925323 20925324 - T APEX1 Frame_Shift_Ins p.V206Cfs*11 0.15 TCGA-50-5930-01 14 21837907 21837907 A TT SUPT16H Splice_Site p.X210_splice 0.18 TCGA-50-5930-01 14 22362973 22362973 G C TRAV8-4 Missense_Mutation p.G35A 0.20 deleterious(0.03) possibly_damaging(0.485) TCGA-50-5930-01 14 22386400 22386400 G A TRAV13-2 5'UTR 0.24 TCGA-50-5930-01 14 22521310 22521310 G A TRAV21 Missense_Mutation p.V111M 0.15 deleterious(0.04) possibly_damaging(0.729) TCGA-50-5930-01 14 23588231 23588231 G T CEBPE Silent p.R24R 0.11 TCGA-50-5930-01 14 23746355 23746355 T A HOMEZ Missense_Mutation p.N28Y 0.23 deleterious(0) probably_damaging(0.935) TCGA-50-5930-01 14 23829981 23829981 C A EFS Missense_Mutation p.R27L 0.21 deleterious(0) probably_damaging(0.976) TCGA-50-5930-01 14 23863103 23863103 G T MYH6 Silent p.L900L 0.18 TCGA-50-5930-01 14 23871704 23871704 C T MYH6 Silent p.R370R 0.13 TCGA-50-5930-01 14 23889103 23889103 A T MYH7 Missense_Mutation p.L1226Q 0.15 deleterious(0.05) probably_damaging(0.985) TCGA-50-5930-01 14 23902306 23902306 G T MYH7 Missense_Mutation p.S111Y 0.18 tolerated(0.2) possibly_damaging(0.892) TCGA-50-5930-01 14 24884911 24884911 G T NYNRIN Missense_Mutation p.R1319L 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.508) TCGA-50-5930-01 14 24897058 24897058 C A CBLN3 Silent p.R185R 0.19 TCGA-50-5930-01 14 26917500 26917500 C A NOVA1 Nonsense_Mutation p.G397* 0.21 TCGA-50-5930-01 14 51446170 51446170 G A TRIM9 Missense_Mutation p.P669S 0.10 tolerated(0.08) possibly_damaging(0.714) TCGA-50-5930-01 14 52899009 52899009 C A TXNDC16 3'UTR 0.19 TCGA-50-5930-01 14 55462532 55462532 C A WDHD1 Splice_Site p.X315_splice 0.17 TCGA-50-5930-01 14 55477055 55477055 C - WDHD1 Frame_Shift_Del p.D105Mfs*13 0.13 TCGA-50-5930-01 14 59112755 59112755 G T DACT1 Missense_Mutation p.G472W 0.16 deleterious(0.01) probably_damaging(0.945) TCGA-50-5930-01 14 60212455 60212455 C A RTN1 Missense_Mutation p.G329V 0.16 deleterious(0) possibly_damaging(0.682) TCGA-50-5930-01 14 64473827 64473827 A C SYNE2 Missense_Mutation p.Q1488H 0.17 possibly_damaging(0.898) TCGA-50-5930-01 14 68353794 68353794 A T RAD51B Missense_Mutation p.D210V 0.14 deleterious(0) probably_damaging(1) TCGA-50-5930-01 14 69703224 69703224 G T EXD2 Silent p.L419L 0.14 TCGA-50-5930-01 14 72054749 72054749 G T SIPA1L1 Missense_Mutation p.V54L 0.16 tolerated(0.44) benign(0.049) TCGA-50-5930-01 14 72818844 72818844 G C RGS6 Silent p.G42G 0.14 TCGA-50-5930-01 14 72939627 72939627 A T RGS6 Missense_Mutation p.Q195L 0.16 deleterious(0) probably_damaging(0.98) TCGA-50-5930-01 14 73425486 73425486 G T DCAF4 Missense_Mutation p.Q487H 0.16 tolerated(0.3) benign(0.009) TCGA-50-5930-01 14 74062064 74062064 G T ACOT4 Missense_Mutation p.Q324H 0.26 deleterious(0.01) possibly_damaging(0.692) TCGA-50-5930-01 14 74976540 74976540 C A LTBP2 Silent p.R1058R 0.13 TCGA-50-5930-01 14 75367865 75367865 A G DLST Missense_Mutation p.I386V 0.22 deleterious(0.04) possibly_damaging(0.6) TCGA-50-5930-01 14 75388085 75388085 C A RPS6KL1 Missense_Mutation p.A54S 0.08 tolerated(0.14) probably_damaging(1) TCGA-50-5930-01 14 75515832 75515832 T A MLH3 Missense_Mutation p.E176V 0.17 deleterious(0) benign(0.397) TCGA-50-5930-01 14 79175639 79175639 G T NRXN3 Missense_Mutation p.G61V 0.09 deleterious(0) probably_damaging(0.998) TCGA-50-5930-01 14 86088548 86088548 C A FLRT2 Silent p.T230T 0.19 TCGA-50-5930-01 14 88652379 88652379 G A KCNK10 Missense_Mutation p.R378C 0.28 deleterious(0) probably_damaging(0.939) TCGA-50-5930-01 14 94394793 94394793 G T FAM181A Silent p.R116R 0.24 TCGA-50-5930-01 14 94933717 94933717 T C SERPINA9 Missense_Mutation p.K229E 0.26 tolerated(0.14) benign(0.102) TCGA-50-5930-01 14 94933718 94933718 G C SERPINA9 Silent p.A228A 0.22 TCGA-50-5930-01 14 95562588 95562588 T C DICER1 Missense_Mutation p.K1557E 0.27 deleterious(0) probably_damaging(0.998) TCGA-50-5930-01 14 96135912 96135912 C A TCL6 RNA 0.16 TCGA-50-5930-01 15 20170187 20170187 C A IGHV1OR15-9 Nonsense_Mutation p.E29* 0.13 TCGA-50-5930-01 15 23811425 23811425 C A MKRN3 Missense_Mutation p.L166I 0.21 tolerated(0.33) benign(0.002) TCGA-50-5930-01 15 23890254 23890254 G T MAGEL2 Missense_Mutation p.P276Q 0.16 deleterious(0) probably_damaging(0.998) TCGA-50-5930-01 15 25468467 25468467 T A SNORD115-29 RNA 0.21 TCGA-50-5930-01 15 27114398 27114398 G T GABRA5 Translation_Start_Site p.M1? 0.19 deleterious_low_confidence(0) benign(0) TCGA-50-5930-01 15 42158680 42158680 C A SPTBN5 Missense_Mutation p.W2164C 0.24 probably_damaging(1) TCGA-50-5930-01 15 42445819 42445819 T A PLA2G4F Missense_Mutation p.S164C 0.11 tolerated(0.11) benign(0.077) TCGA-50-5930-01 15 43687327 43687327 A T TUBGCP4 Missense_Mutation p.E346V 0.17 deleterious(0) benign(0.171) TCGA-50-5930-01 15 45402679 45402679 C A DUOX2 Silent p.V329V 0.17 TCGA-50-5930-01 15 45559870 45559870 G A SLC28A2 Missense_Mutation p.A359T 0.27 deleterious(0.02) benign(0.038) TCGA-50-5930-01 15 45848209 45848209 A G RP11-96O20.2 5'Flank 0.21 TCGA-50-5930-01 15 49149957 49149957 T A SHC4 Silent p.I334I 0.22 TCGA-50-5930-01 15 49584645 49584645 A T GALK2 Missense_Mutation p.E293V 0.10 deleterious(0.03) benign(0.233) TCGA-50-5930-01 15 51276288 51276288 G T AP4E1 Missense_Mutation p.G679V 0.16 tolerated(0.24) benign(0.394) TCGA-50-5930-01 15 51991575 51991575 G T SCG3 Missense_Mutation p.D349Y 0.16 tolerated_low_confidence(0.09) benign(0.039) TCGA-50-5930-01 15 56140605 56140605 C A NEDD4 Missense_Mutation p.D850Y 0.15 deleterious(0) probably_damaging(1) TCGA-50-5930-01 15 57511744 57511744 G A TCF12 Intron 0.16 TCGA-50-5930-01 15 59139570 59139570 C T FAM63B Silent p.N481N 0.19 TCGA-50-5930-01 15 65681694 65681694 C T IGDCC4 Missense_Mutation p.A822T 0.22 deleterious(0.01) probably_damaging(0.988) TCGA-50-5930-01 15 66737042 66737042 A T MAP2K1 Nonsense_Mutation p.R189* 0.17 TCGA-50-5930-01 15 69721485 69721485 G T KIF23 Missense_Mutation p.L335F 0.24 deleterious(0.02) possibly_damaging(0.658) TCGA-50-5930-01 15 70952514 70952514 C A UACA Silent p.R1385R 0.12 TCGA-50-5930-01 15 71125075 71125075 C T LARP6 Silent p.E264E 0.28 TCGA-50-5930-01 15 73593676 73593676 A C NEO1 Missense_Mutation p.I1394L 0.20 tolerated(0.62) benign(0.001) TCGA-50-5930-01 15 75968836 75968836 G T CSPG4 Silent p.G2008G 0.18 TCGA-50-5930-01 15 75981537 75981537 G A CSPG4 Silent p.A623A 0.17 TCGA-50-5930-01 15 78208881 78208881 C T RP11-114H24.7 RNA 0.19 TCGA-50-5930-01 15 78217277 78217277 C T RP11-114H24.7 3'Flank 0.18 TCGA-50-5930-01 15 78310192 78310192 T G TBC1D2B Silent p.A526A 0.14 TCGA-50-5930-01 15 78473191 78473191 G T ACSBG1 Missense_Mutation p.Q387K 0.17 tolerated(1) benign(0.013) TCGA-50-5930-01 15 82574561 82574561 G C FAM154B Missense_Mutation p.D119H 0.15 deleterious(0.04) possibly_damaging(0.519) TCGA-50-5930-01 15 84488788 84488788 G A ADAMTSL3 Missense_Mutation p.G197S 0.16 deleterious(0) probably_damaging(1) TCGA-50-5930-01 15 84611431 84611431 G T ADAMTSL3 Missense_Mutation p.G734V 0.16 tolerated(0.32) possibly_damaging(0.673) TCGA-50-5930-01 15 84651166 84651166 C - ADAMTSL3 Frame_Shift_Del p.V930* 0.21 TCGA-50-5930-01 15 84706487 84706487 G T ADAMTSL3 Missense_Mutation p.V1669L 0.17 deleterious(0) benign(0.042) TCGA-50-5930-01 15 86124255 86124255 G T AKAP13 Missense_Mutation p.A986S 0.13 deleterious_low_confidence(0.01) benign(0.121) TCGA-50-5930-01 15 88472445 88472445 C A NTRK3 Missense_Mutation p.V704F 0.20 deleterious(0) probably_damaging(0.983) TCGA-50-5930-01 15 89421205 89421205 T A HAPLN3 Missense_Mutation p.H360L 0.27 deleterious(0.02) benign(0.006) TCGA-50-5930-01 15 90226650 90226650 C A PEX11A Missense_Mutation p.M234I 0.20 tolerated(1) benign(0.001) TCGA-50-5930-01 15 90344697 90344697 C T ANPEP Missense_Mutation p.D571N 0.19 tolerated(0.36) benign(0.002) TCGA-50-5930-01 15 90349829 90349829 G T ANPEP 5'UTR 0.25 TCGA-50-5930-01 15 90904514 90904514 A T ZNF774 Nonstop_Mutation p.*484Lext*47 0.19 TCGA-50-5930-01 15 91185331 91185331 G T CRTC3 Missense_Mutation p.D607Y 0.26 deleterious(0) probably_damaging(0.989) TCGA-50-5930-01 15 91491055 91491055 G T UNC45A Silent p.G510G 0.16 TCGA-50-5930-01 16 11065086 11065086 A T CLEC16A Missense_Mutation p.K199N 0.22 tolerated(0.14) benign(0.063) TCGA-50-5930-01 16 12618639 12618639 C T SNX29 Silent p.V753V 0.19 TCGA-50-5930-01 16 1272676 1272676 C A TPSG1 Missense_Mutation p.G163C 0.21 deleterious(0) probably_damaging(1) TCGA-50-5930-01 16 1394978 1394978 G T BAIAP3 Missense_Mutation p.E641D 0.17 tolerated(0.36) probably_damaging(0.989) TCGA-50-5930-01 16 1510920 1510920 C A CLCN7 Missense_Mutation p.W127C 0.14 deleterious(0) probably_damaging(1) TCGA-50-5930-01 16 1537668 1537668 C G PTX4 Missense_Mutation p.A144P 0.16 tolerated(0.05) probably_damaging(0.973) TCGA-50-5930-01 16 17353221 17353221 A T XYLT1 Silent p.P179P 0.19 TCGA-50-5930-01 16 2111938 2111938 G T TSC2 Missense_Mutation p.D396Y 0.16 deleterious(0) probably_damaging(0.961) TCGA-50-5930-01 16 2237017 2237017 G T CASKIN1 Missense_Mutation p.L298M 0.18 probably_damaging(0.999) TCGA-50-5930-01 16 23387172 23387172 C A SCNN1B Missense_Mutation p.D422E 0.22 deleterious(0.02) possibly_damaging(0.508) TCGA-50-5930-01 16 23721536 23721536 C - ERN2 Frame_Shift_Del p.G136Afs*14 0.16 TCGA-50-5930-01 16 24196856 24196856 A G PRKCB Missense_Mutation p.M564V 0.18 deleterious(0) benign(0.208) TCGA-50-5930-01 16 24801439 24801439 G T TNRC6A Missense_Mutation p.Q492H 0.17 tolerated(1) possibly_damaging(0.45) TCGA-50-5930-01 16 2813641 2813641 G T SRRM2 Nonsense_Mutation p.G1038* 0.22 TCGA-50-5930-01 16 2836101 2836101 C T PRSS33 Missense_Mutation p.R23K 0.15 tolerated(0.97) benign(0) TCGA-50-5930-01 16 28509408 28509408 C A APOBR Missense_Mutation p.L988I 0.11 deleterious(0.01) possibly_damaging(0.801) TCGA-50-5930-01 16 28920049 28920049 C A RABEP2 Nonsense_Mutation p.E376* 0.18 TCGA-50-5930-01 16 29912906 29912906 C T ASPHD1 Missense_Mutation p.A205V 0.12 tolerated(0.15) benign(0.027) TCGA-50-5930-01 16 30486882 30486882 C A ITGAL Missense_Mutation p.P103H 0.10 deleterious(0.02) possibly_damaging(0.765) TCGA-50-5930-01 16 30486883 30486883 C A ITGAL Silent p.P103P 0.11 TCGA-50-5930-01 16 310023 310023 G C ITFG3 Silent p.T147T 0.12 TCGA-50-5930-01 16 31008297 31008297 G A STX1B Silent p.D146D 0.15 TCGA-50-5930-01 16 31404672 31404672 C A ITGAD 5'UTR 0.21 TCGA-50-5930-01 16 339531 339531 C A AXIN1 Missense_Mutation p.G791W 0.28 deleterious(0) probably_damaging(1) TCGA-50-5930-01 16 3614926 3614926 G T NLRC3 Missense_Mutation p.Q85K 0.15 tolerated(0.09) benign(0.058) TCGA-50-5930-01 16 49672203 49672203 G T ZNF423 Missense_Mutation p.P287Q 0.09 tolerated(0.15) probably_damaging(0.978) TCGA-50-5930-01 16 49672204 49672204 G T ZNF423 Missense_Mutation p.P287T 0.09 deleterious(0.03) possibly_damaging(0.877) TCGA-50-5930-01 16 50324449 50324449 G C ADCY7 Missense_Mutation p.V85L 0.13 tolerated(0.21) benign(0.013) TCGA-50-5930-01 16 50733415 50733415 G T NOD2 Silent p.S30S 0.12 TCGA-50-5930-01 16 51171394 51171394 G C SALL1 Missense_Mutation p.P1202A 0.06 deleterious(0) possibly_damaging(0.611) TCGA-50-5930-01 16 51173618 51173618 C A SALL1 Missense_Mutation p.D839Y 0.16 deleterious(0) probably_damaging(0.921) TCGA-50-5930-01 16 51175067 51175067 C G SALL1 Missense_Mutation p.V356L 0.22 tolerated(0.6) benign(0.02) TCGA-50-5930-01 16 53289552 53289552 G T CHD9 Missense_Mutation p.R1357L 0.13 probably_damaging(0.989) TCGA-50-5930-01 16 53653041 53653041 C G RPGRIP1L Missense_Mutation p.R1171P 0.17 deleterious(0) probably_damaging(0.923) TCGA-50-5930-01 16 55703525 55703525 C A SLC6A2 Missense_Mutation p.P108H 0.20 deleterious(0) probably_damaging(0.998) TCGA-50-5930-01 16 55897283 55897283 G T CES5A Missense_Mutation p.H292N 0.17 tolerated(0.58) benign(0.009) TCGA-50-5930-01 16 55903590 55903590 G T CES5A Missense_Mutation p.L191M 0.21 deleterious(0.01) probably_damaging(1) TCGA-50-5930-01 16 56685858 56685858 G T MT1B 5'UTR 0.25 TCGA-50-5930-01 16 57597775 57597775 G T GPR114 Missense_Mutation p.A105S 0.19 tolerated(0.29) benign(0.139) TCGA-50-5930-01 16 64981634 64981634 G T CDH11 Missense_Mutation p.L755M 0.36 deleterious(0) probably_damaging(0.999) TCGA-50-5930-01 16 65025722 65025722 C A CDH11 Missense_Mutation p.V254L 0.38 deleterious(0.02) benign(0.221) TCGA-50-5930-01 16 68404836 68404836 C A SMPD3 Missense_Mutation p.D417Y 0.29 deleterious(0) possibly_damaging(0.905) TCGA-50-5930-01 16 70916613 70916613 C T HYDIN Missense_Mutation p.G3389R 0.12 probably_damaging(0.991) TCGA-50-5930-01 16 71318845 71318845 G A CMTR2 Missense_Mutation p.H327Y 0.19 tolerated(0.15) benign(0.001) TCGA-50-5930-01 16 72156888 72156888 C A PMFBP1 Splice_Site p.X898_splice 0.18 TCGA-50-5930-01 16 73126811 73126811 C A HCCAT5 RNA 0.13 TCGA-50-5930-01 16 74368843 74368843 C G RP11-252A24.2 3'Flank 0.08 TCGA-50-5930-01 16 76513394 76513394 G A CNTNAP4 Missense_Mutation p.S541N 0.13 deleterious(0) possibly_damaging(0.873) TCGA-50-5930-01 16 7743371 7743371 T A RBFOX1 Intron 0.13 TCGA-50-5930-01 16 7760707 7760707 G T RBFOX1 Missense_Mutation p.S406I 0.19 deleterious(0) probably_damaging(0.999) TCGA-50-5930-01 16 81181065 81181065 C T PKD1L2 RNA 0.13 TCGA-50-5930-01 16 81181067 81181067 G T PKD1L2 RNA 0.14 TCGA-50-5930-01 16 81249875 81249876 - T PKD1L2 Frame_Shift_Ins p.T147Dfs*85 0.10 TCGA-50-5930-01 16 81279206 81279206 A T BCMO1 Missense_Mutation p.D64V 0.12 deleterious(0.01) possibly_damaging(0.836) TCGA-50-5930-01 16 81953095 81953095 G A PLCG2 Silent p.R687R 0.22 TCGA-50-5930-01 16 84012093 84012093 G A NECAB2 Missense_Mutation p.D91N 0.14 deleterious(0) probably_damaging(1) TCGA-50-5930-01 16 84163918 84163918 G A HSDL1 Silent p.D113D 0.14 TCGA-50-5930-01 16 84213276 84213276 G T TAF1C Silent p.S627S 0.14 TCGA-50-5930-01 16 84256191 84256191 G T KCNG4 Silent p.R398R 0.12 TCGA-50-5930-01 16 87678057 87678057 C A JPH3 Silent p.S192S 0.22 TCGA-50-5930-01 16 8870307 8870307 A T ABAT Missense_Mutation p.H410L 0.17 tolerated(0.28) benign(0) TCGA-50-5930-01 16 88898457 88898457 C T GALNS Silent p.G317G 0.15 TCGA-50-5930-01 16 89187304 89187304 G T ACSF3 Missense_Mutation p.D408Y 0.19 deleterious(0) probably_damaging(0.964) TCGA-50-5930-01 17 10206728 10206728 T A MYH13 Nonsense_Mutation p.K1852* 0.49 TCGA-50-5930-01 17 10247254 10247254 C A MYH13 Missense_Mutation p.G586V 0.58 deleterious(0) possibly_damaging(0.866) TCGA-50-5930-01 17 10417404 10417404 G T MYH1 Missense_Mutation p.R191S 0.46 deleterious(0.01) benign(0.027) TCGA-50-5930-01 17 10424607 10424607 C T MYH2 Missense_Mutation p.S1939N 0.41 tolerated_low_confidence(0.36) benign(0.001) TCGA-50-5930-01 17 11593470 11593470 G T DNAH9 Missense_Mutation p.W1444L 0.50 probably_damaging(0.997) TCGA-50-5930-01 17 15498129 15498129 C A RP11-385D13.1 Missense_Mutation p.G904C 0.33 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-50-5930-01 17 16664737 16664737 A T CCDC144A Splice_Site p.X1125_splice 0.41 TCGA-50-5930-01 17 16703442 16703442 G C CCDC144A 3'UTR 0.29 TCGA-50-5930-01 17 19186638 19186638 A C EPN2 Missense_Mutation p.K69T 0.28 deleterious(0) probably_damaging(1) TCGA-50-5930-01 17 20319881 20319881 G T SRP68P3 RNA 0.38 TCGA-50-5930-01 17 20805632 20805632 T A RP11-344E13.3 RNA 0.30 TCGA-50-5930-01 17 20805633 20805633 A G RP11-344E13.3 RNA 0.29 TCGA-50-5930-01 17 20860022 20860022 G T RP11-381P6.1 Intron 0.38 TCGA-50-5930-01 17 21477541 21477541 G C AC138710.1 5'Flank 0.22 TCGA-50-5930-01 17 26965113 26965113 C G KIAA0100 Splice_Site p.X505_splice 0.46 TCGA-50-5930-01 17 29631780 29631780 A G EVI2B Missense_Mutation p.L283S 0.33 tolerated(0.1) probably_damaging(0.934) TCGA-50-5930-01 17 3030688 3030688 G A OR1G1 Missense_Mutation p.T53I 0.44 deleterious(0.01) benign(0.077) TCGA-50-5930-01 17 32598239 32598239 T A CCL7 Missense_Mutation p.Y51N 0.28 deleterious(0) probably_damaging(0.999) TCGA-50-5930-01 17 32685123 32685123 C A CCL13 Silent p.G90G 0.41 TCGA-50-5930-01 17 32955606 32955606 C G TMEM132E Silent p.T251T 0.21 TCGA-50-5930-01 17 3301588 3301588 G T OR1E1 Silent p.L39L 0.44 TCGA-50-5930-01 17 3417216 3417216 C A TRPV3 Missense_Mutation p.V791L 0.40 deleterious_low_confidence(0) benign(0.034) TCGA-50-5930-01 17 3470069 3470069 C A SHPK 3'UTR 0.60 TCGA-50-5930-01 17 3572681 3572681 C T EMC6 Missense_Mutation p.R81W 0.37 deleterious(0.02) benign(0.343) TCGA-50-5930-01 17 37341404 37341404 C A CACNB1 Splice_Site p.X210_splice 0.40 TCGA-50-5930-01 17 37627398 37627398 A G CDK12 Missense_Mutation p.K438R 0.36 possibly_damaging(0.678) TCGA-50-5930-01 17 3807293 3807293 G T P2RX1 Silent p.A151A 0.37 TCGA-50-5930-01 17 38240228 38240228 C T THRA Silent p.A121A 0.27 TCGA-50-5930-01 17 39183373 39183373 G C KRTAP1-5 Missense_Mutation p.P12R 0.33 deleterious(0) unknown(0) TCGA-50-5930-01 17 39471645 39471645 G T KRTAP17-1 Nonsense_Mutation p.C86* 0.36 TCGA-50-5930-01 17 39537458 39537458 C A KRT34 Missense_Mutation p.Q188H 0.23 deleterious(0.01) benign(0.022) TCGA-50-5930-01 17 39671654 39671654 C A KRT15 Intron 0.47 TCGA-50-5930-01 17 39884526 39884526 T A HAP1 Missense_Mutation p.N376I 0.43 deleterious(0.01) possibly_damaging(0.844) TCGA-50-5930-01 17 40997826 40997826 G T AOC2 Nonsense_Mutation p.G395* 0.36 TCGA-50-5930-01 17 41955335 41955335 C A MPP2 Missense_Mutation p.R500L 0.50 deleterious(0.02) probably_damaging(0.981) TCGA-50-5930-01 17 42169822 42169822 C T HDAC5 Silent p.L283L 0.31 TCGA-50-5930-01 17 43531071 43531071 C A PLEKHM1 Missense_Mutation p.R716M 0.37 deleterious(0) possibly_damaging(0.855) TCGA-50-5930-01 17 4857014 4857014 T A ENO3 Missense_Mutation p.F106L 0.52 tolerated_low_confidence(1) probably_damaging(0.994) TCGA-50-5930-01 17 51901928 51901928 T G KIF2B Missense_Mutation p.S512A 0.12 tolerated(0.06) benign(0.309) TCGA-50-5930-01 17 58094828 58094828 C A TBC1D3P1-DHX40P1 RNA 0.35 TCGA-50-5930-01 17 58258864 58258864 C A USP32 Nonsense_Mutation p.E1457* 0.49 TCGA-50-5930-01 17 58300927 58300927 G T USP32 Missense_Mutation p.P485T 0.47 tolerated(0.2) probably_damaging(0.998) TCGA-50-5930-01 17 5998470 5998470 C T WSCD1 Missense_Mutation p.T259I 0.44 tolerated(0.1) benign(0.21) TCGA-50-5930-01 17 67215832 67215832 C T ABCA10 Silent p.K128K 0.40 TCGA-50-5930-01 17 67309287 67309287 T A ABCA5 Missense_Mutation p.T85S 0.44 tolerated(0.09) benign(0.027) TCGA-50-5930-01 17 6733603 6733603 C G TEKT1 Missense_Mutation p.R31S 0.46 deleterious(0) probably_damaging(0.973) TCGA-50-5930-01 17 72480366 72480366 A C CD300A 3'UTR 0.46 TCGA-50-5930-01 17 72541056 72541056 A T CD300C Missense_Mutation p.V31E 0.33 deleterious(0) probably_damaging(1) TCGA-50-5930-01 17 72541058 72541058 G T CD300C Silent p.T30T 0.32 TCGA-50-5930-01 17 72862601 72862601 C A FDXR Silent p.P163P 0.29 TCGA-50-5930-01 17 73489596 73489596 G T KIAA0195 Missense_Mutation p.G704V 0.33 deleterious(0) probably_damaging(1) TCGA-50-5930-01 17 74396252 74396252 C A UBE2O Missense_Mutation p.Q377H 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.459) TCGA-50-5930-01 17 7577153 7577153 C A TP53 Missense_Mutation p.G262V 0.44 deleterious(0) probably_damaging(0.994) TCGA-50-5930-01 17 76968605 76968605 C A LGALS3BP Missense_Mutation p.G271W 0.31 deleterious(0.02) probably_damaging(0.935) TCGA-50-5930-01 17 76968606 76968606 T A LGALS3BP Silent p.T270T 0.32 TCGA-50-5930-01 17 77768624 77768624 T C CBX8 Missense_Mutation p.Q327R 0.33 tolerated(0.06) benign(0.069) TCGA-50-5930-01 17 79612387 79612388 - T TSPAN10 Frame_Shift_Ins p.A137Gfs*9 0.27 TCGA-50-5930-01 17 80048842 80048842 C A FASN Silent p.L532L 0.48 TCGA-50-5930-01 18 117050 117050 A T ROCK1P1 RNA 0.10 TCGA-50-5930-01 18 13826611 13826611 C T MC5R Missense_Mutation p.L283F 0.15 deleterious(0) probably_damaging(1) TCGA-50-5930-01 18 18548810 18548810 C A ROCK1 Nonsense_Mutation p.E976* 0.11 TCGA-50-5930-01 18 19399507 19399507 G C MIB1 Missense_Mutation p.D577H 0.15 deleterious(0.01) probably_damaging(0.979) TCGA-50-5930-01 18 21407284 21407284 A T LAMA3 Missense_Mutation p.L892F 0.13 possibly_damaging(0.904) TCGA-50-5930-01 18 22805561 22805561 T A ZNF521 Missense_Mutation p.N774I 0.18 deleterious(0.02) probably_damaging(0.917) TCGA-50-5930-01 18 29049078 29049078 G T DSG3 Nonsense_Mutation p.E555* 0.17 TCGA-50-5930-01 18 29225346 29225346 C A B4GALT6 Missense_Mutation p.R148M 0.12 deleterious(0.03) benign(0.119) TCGA-50-5930-01 18 29453449 29453449 T C TRAPPC8 Missense_Mutation p.Y669C 0.14 tolerated(0.25) benign(0.003) TCGA-50-5930-01 18 32374206 32374206 G A DTNA Silent p.A118A 0.06 TCGA-50-5930-01 18 33706778 33706778 C A SLC39A6 Nonsense_Mutation p.G65* 0.12 TCGA-50-5930-01 18 34205560 34205560 C A FHOD3 Silent p.S348S 0.21 TCGA-50-5930-01 18 3502611 3502611 C A DLGAP1 Missense_Mutation p.Q868H 0.21 deleterious(0) probably_damaging(0.968) TCGA-50-5930-01 18 42531391 42531391 C A SETBP1 Missense_Mutation p.P696T 0.18 tolerated(0.11) probably_damaging(0.999) TCGA-50-5930-01 18 42531573 42531573 G T SETBP1 Silent p.P756P 0.34 TCGA-50-5930-01 18 43262322 43262322 A T SLC14A2 Silent p.S867S 0.21 TCGA-50-5930-01 18 44560678 44560678 G T TCEB3B Missense_Mutation p.L320I 0.12 tolerated(0.17) possibly_damaging(0.636) TCGA-50-5930-01 18 52262191 52262191 C G DYNAP Missense_Mutation p.Q53E 0.11 deleterious(0.03) benign(0.388) TCGA-50-5930-01 18 5291320 5291320 T C ZBTB14 Missense_Mutation p.E296G 0.18 deleterious(0.01) possibly_damaging(0.821) TCGA-50-5930-01 18 53128314 53128314 C G TCF4 Missense_Mutation p.M182I 0.17 tolerated(0.15) benign(0.066) TCGA-50-5930-01 18 55247313 55247313 C A FECH Silent p.P62P 0.10 TCGA-50-5930-01 18 56390327 56390327 C T MALT1 Missense_Mutation p.H356Y 0.23 deleterious(0) probably_damaging(1) TCGA-50-5930-01 18 57136785 57136785 C A CCBE1 Missense_Mutation p.G107V 0.14 deleterious(0) probably_damaging(1) TCGA-50-5930-01 18 61306952 61306952 A T SERPINB4 Silent p.L176L 0.09 TCGA-50-5930-01 18 61306954 61306954 G T SERPINB4 Missense_Mutation p.L176I 0.09 deleterious(0) probably_damaging(0.998) TCGA-50-5930-01 18 61328307 61328307 G T SERPINB3 Missense_Mutation p.N48K 0.20 tolerated(0.14) benign(0.041) TCGA-50-5930-01 18 67776749 67776749 C G RTTN Missense_Mutation p.L1296F 0.16 deleterious(0) probably_damaging(0.999) TCGA-50-5930-01 18 683356 683356 C A ENOSF1 Missense_Mutation p.D277Y 0.18 deleterious(0) probably_damaging(0.99) TCGA-50-5930-01 18 7011391 7011391 G C LAMA1 Missense_Mutation p.P1199A 0.21 deleterious(0) benign(0.265) TCGA-50-5930-01 18 7231610 7231610 C A LRRC30 Nonsense_Mutation p.C158* 0.24 TCGA-50-5930-01 18 72999809 72999809 A T TSHZ1 Missense_Mutation p.K771M 0.13 deleterious(0) probably_damaging(0.987) TCGA-50-5930-01 18 77104343 77104343 G T ATP9B Missense_Mutation p.D821Y 0.20 deleterious(0) possibly_damaging(0.832) TCGA-50-5930-01 18 9254713 9254713 A T ANKRD12 Missense_Mutation p.K483I 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-50-5930-01 19 10624708 10624708 G T S1PR5 Missense_Mutation p.S327Y 0.24 deleterious(0.02) benign(0.021) TCGA-50-5930-01 19 10657614 10657614 G C ATG4D Missense_Mutation p.R198P 0.31 tolerated(0.2) benign(0.004) TCGA-50-5930-01 19 11136097 11136097 G T SMARCA4 Splice_Site p.X1028_splice 0.22 TCGA-50-5930-01 19 12864126 12864126 T G BEST2 Missense_Mutation p.C69G 0.14 deleterious(0) probably_damaging(0.998) TCGA-50-5930-01 19 13201204 13201204 G A NFIX Intron 0.16 TCGA-50-5930-01 19 1433737 1433737 G T DAZAP1 Intron 0.15 TCGA-50-5930-01 19 15342626 15342626 C A EPHX3 Missense_Mutation p.G97V 0.20 tolerated(0.07) benign(0.418) TCGA-50-5930-01 19 16060245 16060245 C A OR10H4 Missense_Mutation p.A143D 0.19 deleterious(0.02) possibly_damaging(0.878) TCGA-50-5930-01 19 2039657 2039657 G - MKNK2 Frame_Shift_Del p.S452Vfs*32 0.36 TCGA-50-5930-01 19 22379568 22379568 C G ZNF676 5'UTR 0.18 TCGA-50-5930-01 19 22939861 22939861 G C ZNF99 3'Flank 0.19 TCGA-50-5930-01 19 30193598 30193598 C A C19orf12 3'UTR 0.19 TCGA-50-5930-01 19 30935737 30935737 A T ZNF536 Missense_Mutation p.H423L 0.20 tolerated(0.43) probably_damaging(0.993) TCGA-50-5930-01 19 31039563 31039563 A T ZNF536 Missense_Mutation p.M1013L 0.31 tolerated(0.44) benign(0.001) TCGA-50-5930-01 19 35551690 35551690 G T HPN Silent p.L260L 0.29 TCGA-50-5930-01 19 35850246 35850246 G C FFAR3 Missense_Mutation p.V152L 0.26 deleterious(0.01) benign(0.039) TCGA-50-5930-01 19 36014340 36014340 C G SBSN 3'UTR 0.23 TCGA-50-5930-01 19 36276380 36276380 G T ARHGAP33 Missense_Mutation p.G646V 0.23 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-50-5930-01 19 37118298 37118298 C A ZNF382 Missense_Mutation p.A500D 0.30 deleterious(0) probably_damaging(0.999) TCGA-50-5930-01 19 37129889 37129889 C A ZNF461 Missense_Mutation p.C453F 0.20 tolerated(0.73) possibly_damaging(0.459) TCGA-50-5930-01 19 37368305 37368305 G T ZNF345 Silent p.R191R 0.37 TCGA-50-5930-01 19 38895995 38895995 G C FAM98C Silent p.L189L 0.18 TCGA-50-5930-01 19 38958451 38958451 G T RYR1 Missense_Mutation p.R1127L 0.18 possibly_damaging(0.665) TCGA-50-5930-01 19 38980057 38980057 A T RYR1 Nonsense_Mutation p.K1930* 0.30 TCGA-50-5930-01 19 39694569 39694569 G T SYCN Missense_Mutation p.P109Q 0.28 tolerated(0.08) probably_damaging(1) TCGA-50-5930-01 19 40095951 40095951 G T LGALS13 Nonsense_Mutation p.E76* 0.22 TCGA-50-5930-01 19 40420037 40420037 C A FCGBP Missense_Mutation p.R986L 0.34 benign(0.086) TCGA-50-5930-01 19 40421158 40421158 G T FCGBP Silent p.R921R 0.27 TCGA-50-5930-01 19 40832338 40832338 C A C19orf47 Silent p.R202R 0.26 TCGA-50-5930-01 19 40903049 40903049 G T PRX Silent p.R404R 0.16 TCGA-50-5930-01 19 41025342 41025342 A - SPTBN4 Frame_Shift_Del p.E981Rfs*3 0.17 TCGA-50-5930-01 19 41430217 41430217 G T CYP2B7P RNA 0.19 TCGA-50-5930-01 19 41765522 41765522 C A AXL Silent p.R800R 0.41 TCGA-50-5930-01 19 42351661 42351661 G T DMRTC2 Missense_Mutation p.K55N 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-50-5930-01 19 42509975 42509975 G T GRIK5 Silent p.L721L 0.29 TCGA-50-5930-01 19 42752804 42752804 C A ERF Missense_Mutation p.R487L 0.25 deleterious(0.03) possibly_damaging(0.726) TCGA-50-5930-01 19 42830422 42830422 G T MEGF8 Missense_Mutation p.M9I 0.24 tolerated_low_confidence(0.37) unknown(0) TCGA-50-5930-01 19 42874405 42874405 G T MEGF8 Missense_Mutation p.R2233L 0.14 tolerated(0.22) benign(0.277) TCGA-50-5930-01 19 43349198 43349198 G T PSG10P RNA 0.15 TCGA-50-5930-01 19 43514152 43514152 A T PSG11 Nonstop_Mutation p.*336Kext*3 0.17 TCGA-50-5930-01 19 43586679 43586679 A G PSG2 Missense_Mutation p.W15R 0.18 deleterious(0.04) benign(0.007) TCGA-50-5930-01 19 43690637 43690637 C G PSG5 5'UTR 0.21 TCGA-50-5930-01 19 44471619 44471619 A G ZNF221 3'UTR 0.37 TCGA-50-5930-01 19 44570386 44570386 G T ZNF223 Missense_Mutation p.E135D 0.23 tolerated(0.38) benign(0.005) TCGA-50-5930-01 19 44681750 44681750 G T ZNF226 Missense_Mutation p.G779C 0.23 deleterious(0) possibly_damaging(0.508) TCGA-50-5930-01 19 46317927 46317927 C A RSPH6A Missense_Mutation p.D170Y 0.38 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-50-5930-01 19 4702064 4702064 C A DPP9 Silent p.T329T 0.24 TCGA-50-5930-01 19 47884581 47884581 G T DHX34 Missense_Mutation p.G1100W 0.44 deleterious(0.01) possibly_damaging(0.599) TCGA-50-5930-01 19 49136878 49136878 G A DBP Silent p.D195D 0.29 TCGA-50-5930-01 19 49844535 49844535 T A TEAD2 3'UTR 0.33 TCGA-50-5930-01 19 50461930 50461930 G T SIGLEC11 Missense_Mutation p.Q445K 0.35 tolerated(0.14) possibly_damaging(0.564) TCGA-50-5930-01 19 51017910 51017910 G C ASPDH 5'Flank 0.30 TCGA-50-5930-01 19 51051856 51051856 G T LRRC4B Silent p.V80V 0.20 TCGA-50-5930-01 19 51217136 51217136 C A SHANK1 Silent p.G237G 0.49 TCGA-50-5930-01 19 51480645 51480645 T A KLK7 3'UTR 0.39 TCGA-50-5930-01 19 51875654 51875654 C A NKG7 Missense_Mutation p.G46W 0.34 deleterious(0) probably_damaging(0.966) TCGA-50-5930-01 19 51883799 51883799 G A LIM2 Silent p.Y182Y 0.38 TCGA-50-5930-01 19 53005157 53005157 C G ZNF578 Missense_Mutation p.P20R 0.34 deleterious(0.04) probably_damaging(0.994) TCGA-50-5930-01 19 53013967 53013967 T A ZNF578 Missense_Mutation p.H111Q 0.36 tolerated(0.08) benign(0.019) TCGA-50-5930-01 19 53473049 53473049 G A ZNF702P RNA 0.30 TCGA-50-5930-01 19 54210730 54210730 G A MIR520C RNA 0.33 TCGA-50-5930-01 19 54215586 54215586 C G MIR517A RNA 0.36 TCGA-50-5930-01 19 54313460 54313460 C A NLRP12 Missense_Mutation p.G485C 0.34 deleterious(0) probably_damaging(1) TCGA-50-5930-01 19 55107735 55107735 A T LILRA1 Missense_Mutation p.Q347L 0.35 deleterious(0) probably_damaging(0.968) TCGA-50-5930-01 19 55146178 55146178 C A LILRB1 Missense_Mutation p.L484I 0.41 tolerated(0.1) benign(0.089) TCGA-50-5930-01 19 56090052 56090052 G A ZNF579 Silent p.R318R 0.17 TCGA-50-5930-01 19 56156536 56156536 G T ZNF581 3'UTR 0.17 TCGA-50-5930-01 19 56312967 56312967 G T NLRP11 Missense_Mutation p.H714Q 0.28 tolerated(0.59) benign(0.013) TCGA-50-5930-01 19 56413543 56413543 C G NLRP13 Missense_Mutation p.A883P 0.27 tolerated(0.06) benign(0.111) TCGA-50-5930-01 19 57640032 57640032 C A USP29 5'UTR 0.29 TCGA-50-5930-01 19 57642891 57642891 T A USP29 3'UTR 0.43 TCGA-50-5930-01 19 59060803 59060803 C T TRIM28 Missense_Mutation p.P590S 0.17 tolerated(0.1) benign(0.007) TCGA-50-5930-01 19 6429791 6429791 G A SLC25A41 Missense_Mutation p.L190F 0.09 tolerated(1) probably_damaging(0.938) TCGA-50-5930-01 19 6586184 6586184 C A CD70 Silent p.L143L 0.23 TCGA-50-5930-01 19 8176044 8176044 C G FBN3 Missense_Mutation p.V1370L 0.33 tolerated(0.31) benign(0.294) TCGA-50-5930-01 19 8809088 8809088 G C ACTL9 5'UTR 0.14 TCGA-50-5930-01 19 9072988 9072988 C T MUC16 Missense_Mutation p.D4820N 0.15 unknown(0) TCGA-50-5930-01 19 9072998 9072998 T G MUC16 Silent p.A4816A 0.14 TCGA-50-5930-01 19 9090539 9090539 C A MUC16 Nonsense_Mutation p.G426* 0.25 TCGA-50-5930-01 1 100346946 100346946 A T AGL Silent p.A700A 0.20 TCGA-50-5930-01 1 100661970 100661970 G A DBT Silent p.P430P 0.18 TCGA-50-5930-01 1 103404626 103404626 C A COL11A1 Nonsense_Mutation p.G1135* 0.11 TCGA-50-5930-01 1 103461466 103461466 T C COL11A1 Splice_Site p.X766_splice 0.17 TCGA-50-5930-01 1 103548386 103548386 A T COL11A1 Missense_Mutation p.S83R 0.18 probably_damaging(0.999) TCGA-50-5930-01 1 109242479 109242479 G T PRPF38B Missense_Mutation p.S493I 0.17 tolerated_low_confidence(0.05) unknown(0) TCGA-50-5930-01 1 110596590 110596590 G T STRIP1 3'UTR 0.20 TCGA-50-5930-01 1 110765720 110765720 C A KCNC4 Missense_Mutation p.F271L 0.20 tolerated(0.74) benign(0.001) TCGA-50-5930-01 1 11103030 11103030 G T MASP2 Missense_Mutation p.P264H 0.19 deleterious(0) probably_damaging(1) TCGA-50-5930-01 1 113471726 113471726 T A SLC16A1 Missense_Mutation p.M69L 0.20 tolerated(0.67) benign(0.034) TCGA-50-5930-01 1 114394674 114394674 T A PTPN22 Missense_Mutation p.Q268L 0.23 deleterious(0) probably_damaging(1) TCGA-50-5930-01 1 114397554 114397554 T A PTPN22 Missense_Mutation p.S220C 0.18 tolerated(0.06) benign(0.023) TCGA-50-5930-01 1 114680573 114680573 G C SYT6 Silent p.G120G 0.14 TCGA-50-5930-01 1 115398151 115398151 G T SYCP1 Silent p.A22A 0.14 TCGA-50-5930-01 1 117560996 117560996 C G CD101 Missense_Mutation p.Q611E 0.12 deleterious(0.03) benign(0.278) TCGA-50-5930-01 1 118441740 118441740 T - GDAP2 Frame_Shift_Del p.E247Sfs*11 0.15 TCGA-50-5930-01 1 118477298 118477298 G T WDR3 Missense_Mutation p.G125V 0.10 deleterious(0.02) probably_damaging(0.983) TCGA-50-5930-01 1 119965146 119965146 C A HSD3B2 Missense_Mutation p.P341Q 0.13 deleterious(0) probably_damaging(0.995) TCGA-50-5930-01 1 120050201 120050201 C T HSD3B1 Silent p.V34V 0.19 TCGA-50-5930-01 1 12317054 12317054 G A VPS13D Missense_Mutation p.R284Q 0.14 benign(0.008) TCGA-50-5930-01 1 12438558 12438558 A T VPS13D Missense_Mutation p.H3665L 0.19 possibly_damaging(0.855) TCGA-50-5930-01 1 12443042 12443042 G T VPS13D Missense_Mutation p.G3733V 0.15 possibly_damaging(0.848) TCGA-50-5930-01 1 13474886 13474886 G A PRAMEF18 Missense_Mutation p.P415S 0.16 deleterious(0) probably_damaging(0.989) TCGA-50-5930-01 1 145415523 145415523 G T HFE2 Missense_Mutation p.M114I 0.18 deleterious(0.04) possibly_damaging(0.542) TCGA-50-5930-01 1 145525064 145525064 G T ITGA10 5'UTR 0.14 TCGA-50-5930-01 1 145761375 145761375 G T PDZK1 Silent p.R396R 0.22 TCGA-50-5930-01 1 152187133 152187133 C - HRNR Frame_Shift_Del p.W2324Cfs*137 0.12 TCGA-50-5930-01 1 152188105 152188105 G T HRNR Silent p.S2000S 0.16 TCGA-50-5930-01 1 152284042 152284042 G C FLG Nonsense_Mutation p.S1107* 0.34 TCGA-50-5930-01 1 152284850 152284850 G T FLG Missense_Mutation p.Q838K 0.33 probably_damaging(0.956) TCGA-50-5930-01 1 152671718 152671718 G T LCE2A 3'UTR 0.37 TCGA-50-5930-01 1 152748872 152748872 C T LCE1F Nonsense_Mutation p.Q9* 0.21 TCGA-50-5930-01 1 152975639 152975639 C A SPRR3 Missense_Mutation p.P48H 0.41 deleterious(0) probably_damaging(0.989) TCGA-50-5930-01 1 153066140 153066140 G T SPRR2E Missense_Mutation p.P30T 0.30 tolerated_low_confidence(0.3) unknown(0) TCGA-50-5930-01 1 155253897 155253897 G T HCN3 Missense_Mutation p.D281Y 0.39 deleterious(0) possibly_damaging(0.77) TCGA-50-5930-01 1 157772173 157772173 C A FCRL1 Missense_Mutation p.V201F 0.32 deleterious(0) probably_damaging(0.99) TCGA-50-5930-01 1 157772174 157772174 A G FCRL1 Silent p.T200T 0.33 TCGA-50-5930-01 1 158061178 158061178 G T KIRREL Missense_Mutation p.V435L 0.08 tolerated(0.1) benign(0.033) TCGA-50-5930-01 1 158517811 158517811 G T OR6Y1 Missense_Mutation p.Q29K 0.41 tolerated(0.06) probably_damaging(0.968) TCGA-50-5930-01 1 158607920 158607920 C A SPTA1 Missense_Mutation p.V1698F 0.38 deleterious(0) probably_damaging(0.971) TCGA-50-5930-01 1 158624459 158624459 G T SPTA1 Missense_Mutation p.P993H 0.35 deleterious(0.01) benign(0.038) TCGA-50-5930-01 1 159505017 159505017 G C OR10J5 Missense_Mutation p.P261A 0.06 deleterious(0) probably_damaging(0.936) TCGA-50-5930-01 1 159558246 159558246 G T APCS Missense_Mutation p.Q140H 0.10 deleterious(0) benign(0.071) TCGA-50-5930-01 1 159921480 159921480 C A SLAMF9 Nonsense_Mutation p.E281* 0.08 TCGA-50-5930-01 1 160012317 160012317 C A KCNJ10 Silent p.T2T 0.10 TCGA-50-5930-01 1 160124871 160124871 C A ATP1A4 Silent p.R82R 0.34 TCGA-50-5930-01 1 161127458 161127458 G T UFC1 Missense_Mutation p.D103Y 0.32 deleterious(0) probably_damaging(0.985) TCGA-50-5930-01 1 161163070 161163070 G A ADAMTS4 Missense_Mutation p.P615L 0.28 deleterious(0.04) benign(0.046) TCGA-50-5930-01 1 163044469 163044469 G T RGS4 3'UTR 0.38 TCGA-50-5930-01 1 16332898 16332898 T A C1orf64 3'UTR 0.25 TCGA-50-5930-01 1 169581569 169581569 G A SELP Nonsense_Mutation p.Q283* 0.08 TCGA-50-5930-01 1 170967557 170967557 G T MROH9 Intron 0.09 TCGA-50-5930-01 1 173010546 173010546 C A TNFSF18 Missense_Mutation p.W187C 0.23 deleterious(0) probably_damaging(0.991) TCGA-50-5930-01 1 175292364 175292364 C A TNR 3'UTR 0.50 TCGA-50-5930-01 1 175323536 175323536 A C TNR Missense_Mutation p.F1125V 0.16 deleterious(0) probably_damaging(0.998) TCGA-50-5930-01 1 17555148 17555148 G T PADI1 Missense_Mutation p.Q227H 0.18 tolerated(0.58) possibly_damaging(0.8) TCGA-50-5930-01 1 17575676 17575676 C A PADI3 Missense_Mutation p.T15N 0.22 deleterious(0.01) probably_damaging(0.966) TCGA-50-5930-01 1 17597438 17597438 C A PADI3 Missense_Mutation p.T299K 0.13 deleterious(0) probably_damaging(0.972) TCGA-50-5930-01 1 178489873 178489873 C A TEX35 Missense_Mutation p.P136Q 0.38 deleterious(0) probably_damaging(0.994) TCGA-50-5930-01 1 179078074 179078074 C A ABL2 Missense_Mutation p.K776N 0.27 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-50-5930-01 1 179304748 179304748 A T SOAT1 Silent p.T95T 0.08 TCGA-50-5930-01 1 180905224 180905224 C A KIAA1614 Missense_Mutation p.P727T 0.11 deleterious(0.01) benign(0.307) TCGA-50-5930-01 1 181058811 181058811 C T IER5 Missense_Mutation p.A258V 0.24 deleterious(0.01) benign(0.006) TCGA-50-5930-01 1 182856400 182856400 G T DHX9 Missense_Mutation p.G1215V 0.45 deleterious(0.01) unknown(0) TCGA-50-5930-01 1 183510146 183510146 G T SMG7 Missense_Mutation p.Q441H 0.37 deleterious(0) probably_damaging(0.984) TCGA-50-5930-01 1 186062712 186062712 G T HMCN1 Silent p.T3369T 0.09 TCGA-50-5930-01 1 186276582 186276582 C A PRG4 Silent p.A577A 0.45 TCGA-50-5930-01 1 190129908 190129908 C G BRINP3 Silent p.L358L 0.31 TCGA-50-5930-01 1 19167005 19167005 C A TAS1R2 Missense_Mutation p.Q536H 0.20 deleterious(0.02) benign(0.166) TCGA-50-5930-01 1 193028552 193028552 G A UCHL5 5'UTR 0.52 TCGA-50-5930-01 1 19518755 19518755 C A UBR4 Missense_Mutation p.A441S 0.23 benign(0.222) TCGA-50-5930-01 1 196254873 196254873 C A KCNT2 Missense_Mutation p.G871C 0.59 deleterious(0) probably_damaging(0.935) TCGA-50-5930-01 1 196876005 196876005 C A CFHR4 Missense_Mutation p.P151T 0.29 deleterious(0.02) probably_damaging(0.975) TCGA-50-5930-01 1 197128562 197128562 T C ZBTB41 Missense_Mutation p.Y886C 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-50-5930-01 1 200776625 200776625 C T CAMSAP2 Missense_Mutation p.P174L 0.06 deleterious(0.01) probably_damaging(0.923) TCGA-50-5930-01 1 203024569 203024569 G A PPFIA4 Silent p.Q107Q 0.30 TCGA-50-5930-01 1 203453035 203453035 C A PRELP Silent p.P241P 0.30 TCGA-50-5930-01 1 205892743 205892743 T A SLC26A9 Splice_Site p.X499_splice 0.20 TCGA-50-5930-01 1 20810160 20810160 C A CAMK2N1 Missense_Mutation p.K73N 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.895) TCGA-50-5930-01 1 20827289 20827289 C T MUL1 Missense_Mutation p.G318E 0.26 deleterious(0) probably_damaging(1) TCGA-50-5930-01 1 209933643 209933643 C G TRAF3IP3 Missense_Mutation p.Q87E 0.18 tolerated(0.41) benign(0.075) TCGA-50-5930-01 1 210977367 210977367 C T KCNH1 Missense_Mutation p.R535Q 0.23 deleterious(0) probably_damaging(0.974) TCGA-50-5930-01 1 212964938 212964938 G A NSL1 Silent p.F56F 0.08 TCGA-50-5930-01 1 214557937 214557937 T A PTPN14 Missense_Mutation p.M421L 0.06 tolerated(0.35) benign(0.001) TCGA-50-5930-01 1 216373209 216373209 C A USH2A Missense_Mutation p.G1191C 0.31 possibly_damaging(0.755) TCGA-50-5930-01 1 216380661 216380661 G T USH2A Silent p.L1090L 0.34 TCGA-50-5930-01 1 216500996 216500996 C A USH2A Missense_Mutation p.G262V 0.25 benign(0.424) TCGA-50-5930-01 1 227838768 227838768 G T ZNF678 Missense_Mutation p.V26F 0.35 tolerated_low_confidence(0.1) benign(0.001) TCGA-50-5930-01 1 227842107 227842107 A T ZNF678 Silent p.T52T 0.10 TCGA-50-5930-01 1 231059666 231059666 C A TTC13 Missense_Mutation p.D579Y 0.30 deleterious(0) probably_damaging(0.996) TCGA-50-5930-01 1 231344821 231344821 G T TRIM67 Missense_Mutation p.V650L 0.05 deleterious(0.05) benign(0.182) TCGA-50-5930-01 1 237791260 237791260 C A RYR2 Missense_Mutation p.T2107K 0.45 probably_damaging(0.954) TCGA-50-5930-01 1 237813375 237813375 G C RYR2 Missense_Mutation p.V2571L 0.07 benign(0.011) TCGA-50-5930-01 1 237947849 237947849 G T RYR2 Missense_Mutation p.M4279I 0.31 benign(0.019) TCGA-50-5930-01 1 238050103 238050103 G T ZP4 Missense_Mutation p.S269R 0.05 tolerated(0.14) benign(0.081) TCGA-50-5930-01 1 238090215 238090215 G A RP11-193H5.1 RNA 0.59 TCGA-50-5930-01 1 240966221 240966221 G T RGS7 Missense_Mutation p.L448I 0.33 tolerated(0.06) probably_damaging(0.956) TCGA-50-5930-01 1 242024751 242024751 A G EXO1 Missense_Mutation p.K330E 0.06 tolerated(0.09) benign(0.439) TCGA-50-5930-01 1 245849618 245849618 C A KIF26B Silent p.S1111S 0.07 TCGA-50-5930-01 1 24664233 24664233 C T GRHL3 Missense_Mutation p.T265I 0.19 tolerated(0.12) probably_damaging(0.932) TCGA-50-5930-01 1 24700206 24700206 T A STPG1 Missense_Mutation p.K186I 0.20 tolerated(0.07) benign(0.004) TCGA-50-5930-01 1 247464316 247464316 C A ZNF496 Silent p.R423R 0.09 TCGA-50-5930-01 1 247582299 247582299 G A NLRP3 Nonsense_Mutation p.W68* 0.48 TCGA-50-5930-01 1 247587189 247587189 C A NLRP3 Missense_Mutation p.F148L 0.54 deleterious(0) probably_damaging(0.986) TCGA-50-5930-01 1 247614961 247614961 G T OR2B11 Missense_Mutation p.F108L 0.29 deleterious(0.03) probably_damaging(0.952) TCGA-50-5930-01 1 247695144 247695144 G T OR2C3 Silent p.R224R 0.29 TCGA-50-5930-01 1 247712411 247712411 G C GCSAML 5'UTR 0.44 TCGA-50-5930-01 1 247875451 247875451 C A OR6F1 Missense_Mutation p.A203S 0.40 tolerated(0.78) benign(0.17) TCGA-50-5930-01 1 248059039 248059039 C G OR2W3 Missense_Mutation p.L51V 0.06 tolerated(0.09) benign(0.196) TCGA-50-5930-01 1 248059284 248059284 C A OR2W3 Nonsense_Mutation p.Y132* 0.48 TCGA-50-5930-01 1 248059635 248059635 C A OR2W3 Silent p.S249S 0.40 TCGA-50-5930-01 1 248129044 248129044 C T OR2AK2 Silent p.R137R 0.03 TCGA-50-5930-01 1 248223986 248223986 G T OR2L3 Translation_Start_Site p.M1? 0.06 deleterious(0) benign(0.12) TCGA-50-5930-01 1 248224243 248224243 G T OR2L3 Missense_Mutation p.G87V 0.05 deleterious(0.01) possibly_damaging(0.703) TCGA-50-5930-01 1 248569300 248569300 G A OR2T1 Nonsense_Mutation p.W2* 0.37 TCGA-50-5930-01 1 27687455 27687455 G A MAP3K6 Missense_Mutation p.T626M 0.20 tolerated(0.34) benign(0.004) TCGA-50-5930-01 1 29365808 29365808 G T EPB41 Silent p.A502A 0.10 TCGA-50-5930-01 1 32162598 32162598 C A COL16A1 Missense_Mutation p.R277L 0.17 unknown(0) TCGA-50-5930-01 1 32280437 32280437 C A SPOCD1 Missense_Mutation p.E166D 0.16 tolerated(0.13) benign(0.009) TCGA-50-5930-01 1 34182023 34182023 G T CSMD2 Missense_Mutation p.T987N 0.19 tolerated(0.08) benign(0.143) TCGA-50-5930-01 1 3427344 3427344 C A MEGF6 Intron 0.24 TCGA-50-5930-01 1 35485054 35485054 C A ZMYM6 Nonsense_Mutation p.G110* 0.10 TCGA-50-5930-01 1 3703638 3703638 C A LRRC47 Missense_Mutation p.R284S 0.17 deleterious(0.01) benign(0.005) TCGA-50-5930-01 1 43889916 43889916 G T SZT2 Missense_Mutation p.A762S 0.21 tolerated(0.2) benign(0.369) TCGA-50-5930-01 1 44160465 44160465 A T KDM4A Missense_Mutation p.H857L 0.16 deleterious(0) probably_damaging(0.954) TCGA-50-5930-01 1 47173629 47173629 T A EFCAB14 Silent p.G143G 0.20 TCGA-50-5930-01 1 47395937 47395937 G T CYP4A11 Silent p.A470A 0.15 TCGA-50-5930-01 1 47746264 47746264 T A STIL Silent p.G622G 0.20 TCGA-50-5930-01 1 49202101 49202101 C A BEND5 Missense_Mutation p.W306C 0.08 deleterious(0.01) probably_damaging(0.981) TCGA-50-5930-01 1 51323665 51323665 C A FAF1 Missense_Mutation p.C17F 0.13 deleterious(0) benign(0.115) TCGA-50-5930-01 1 52823569 52823569 C A CC2D1B Missense_Mutation p.G494V 0.07 tolerated(0.23) benign(0.002) TCGA-50-5930-01 1 54060542 54060542 A C GLIS1 Missense_Mutation p.C12G 0.31 deleterious_low_confidence(0.04) benign(0.003) TCGA-50-5930-01 1 6214849 6214849 C A CHD5 Missense_Mutation p.A206S 0.11 tolerated(0.13) benign(0.016) TCGA-50-5930-01 1 62676939 62676939 T G L1TD1 Missense_Mutation p.F831L 0.25 deleterious(0) probably_damaging(0.998) TCGA-50-5930-01 1 62734024 62734024 C T KANK4 Silent p.E722E 0.22 TCGA-50-5930-01 1 66036391 66036391 G T LEPR Silent p.R92R 0.15 TCGA-50-5930-01 1 66098896 66098896 C A LEPR Intron 0.18 TCGA-50-5930-01 1 67199564 67199564 G C SGIP1 Splice_Site p.X677_splice 0.12 TCGA-50-5930-01 1 74492520 74492520 C A LRRIQ3 Missense_Mutation p.V618F 0.18 tolerated(0.6) benign(0) TCGA-50-5930-01 1 76280794 76280794 G T MSH4 Missense_Mutation p.S263I 0.16 deleterious(0.04) benign(0.142) TCGA-50-5930-01 1 77676163 77676163 T C PIGK Silent p.E35E 0.14 TCGA-50-5930-01 1 7805999 7805999 C A CAMTA1 Missense_Mutation p.L1489I 0.18 tolerated(0.46) probably_damaging(0.99) TCGA-50-5930-01 1 85491810 85491810 T G MCOLN3 Intron 0.13 TCGA-50-5930-01 1 90486399 90486399 G T ZNF326 Missense_Mutation p.S408I 0.12 tolerated(0.49) benign(0.185) TCGA-50-5930-01 1 9063388 9063388 C A SLC2A7 Missense_Mutation p.A504S 0.09 tolerated(0.62) benign(0) TCGA-50-5930-01 1 91779574 91779574 C A HFM1 Missense_Mutation p.A1062S 0.10 tolerated(0.07) benign(0.012) TCGA-50-5930-01 1 91979585 91979585 G T CDC7 Missense_Mutation p.E301D 0.14 tolerated(0.17) benign(0.02) TCGA-50-5930-01 1 98058880 98058880 C T DPYD Missense_Mutation p.G341E 0.19 deleterious(0.02) possibly_damaging(0.907) TCGA-50-5930-01 20 16407835 16407835 C A KIF16B Missense_Mutation p.G509V 0.17 tolerated(0.16) probably_damaging(0.913) TCGA-50-5930-01 20 18541448 18541448 G T SEC23B 3'UTR 0.21 TCGA-50-5930-01 20 21687545 21687545 C A PAX1 Nonsense_Mutation p.Y252* 0.16 TCGA-50-5930-01 20 23729728 23729728 C A CST1 Silent p.V89V 0.13 TCGA-50-5930-01 20 2465148 2465148 C A ZNF343 Missense_Mutation p.Q153H 0.12 deleterious(0.03) benign(0.057) TCGA-50-5930-01 20 30602788 30602788 C A CCM2L Missense_Mutation p.P38T 0.16 deleterious(0) probably_damaging(0.999) TCGA-50-5930-01 20 31294516 31294516 G A COMMD7 Silent p.F96F 0.23 TCGA-50-5930-01 20 31376784 31376784 G C DNMT3B Missense_Mutation p.W260S 0.09 deleterious(0.01) probably_damaging(1) TCGA-50-5930-01 20 3183939 3183939 C A DDRGK1 Missense_Mutation p.S72I 0.25 deleterious(0.01) probably_damaging(0.986) TCGA-50-5930-01 20 3354734 3354734 C A C20orf194 Missense_Mutation p.E191D 0.10 tolerated(0.07) benign(0.129) TCGA-50-5930-01 20 34025201 34025201 G C GDF5 Missense_Mutation p.H170D 0.16 deleterious(0) probably_damaging(0.954) TCGA-50-5930-01 20 35802495 35802495 C A MROH8 Silent p.V121V 0.13 TCGA-50-5930-01 20 3899412 3899412 G C PANK2 Missense_Mutation p.G544A 0.16 deleterious(0) probably_damaging(0.99) TCGA-50-5930-01 20 40714388 40714388 G T PTPRT Missense_Mutation p.R1318S 0.17 deleterious(0) possibly_damaging(0.686) TCGA-50-5930-01 20 40911127 40911127 A T PTPRT Splice_Site p.X726_splice 0.17 TCGA-50-5930-01 20 42744521 42744521 G C JPH2 Silent p.S598S 0.40 TCGA-50-5930-01 20 43530261 43530261 G A YWHAB Silent p.K29K 0.23 TCGA-50-5930-01 20 44539834 44539834 C G PLTP Missense_Mutation p.D53H 0.15 deleterious(0) probably_damaging(0.998) TCGA-50-5930-01 20 44980704 44980704 C A SLC35C2 Missense_Mutation p.A275S 0.32 tolerated(0.39) benign(0.31) TCGA-50-5930-01 20 46365616 46365616 G T SULF2 Missense_Mutation p.F82L 0.21 deleterious(0) possibly_damaging(0.868) TCGA-50-5930-01 20 49626329 49626329 C T KCNG1 Missense_Mutation p.E183K 0.15 deleterious(0.03) benign(0.113) TCGA-50-5930-01 20 54823839 54823839 C A MC3R 5'UTR 0.18 TCGA-50-5930-01 20 55108363 55108363 G T FAM209B 5'UTR 0.13 TCGA-50-5930-01 20 57244416 57244416 G T STX16 Missense_Mutation p.G155W 0.26 deleterious(0.01) benign(0.185) TCGA-50-5930-01 20 57287583 57287583 G T NPEPL1 Missense_Mutation p.V317L 0.18 deleterious(0) possibly_damaging(0.817) TCGA-50-5930-01 20 60448883 60448883 C A CDH4 Missense_Mutation p.P326Q 0.18 deleterious(0) probably_damaging(0.998) TCGA-50-5930-01 20 61485498 61485498 C A TCFL5 Missense_Mutation p.R417L 0.18 deleterious(0) probably_damaging(0.964) TCGA-50-5930-01 20 61950462 61950462 C G COL20A1 Missense_Mutation p.R906G 0.18 deleterious(0) probably_damaging(1) TCGA-50-5930-01 20 62729490 62729490 C A OPRL1 Nonsense_Mutation p.S190* 0.18 TCGA-50-5930-01 20 948683 948683 G T RSPO4 Silent p.R60R 0.23 TCGA-50-5930-01 21 31812801 31812801 G A KRTAP15-1 Silent p.Q52Q 0.34 TCGA-50-5930-01 21 32554864 32554864 C A TIAM1 Missense_Mutation p.G921C 0.22 tolerated(0.29) benign(0.022) TCGA-50-5930-01 21 33063258 33063258 C A SCAF4 Missense_Mutation p.W579C 0.44 probably_damaging(0.941) TCGA-50-5930-01 21 37586794 37586794 C T DOPEY2 Missense_Mutation p.H357Y 0.26 tolerated(1) benign(0.105) TCGA-50-5930-01 21 37721609 37721609 G T MORC3 Missense_Mutation p.A336S 0.40 deleterious(0.03) benign(0.211) TCGA-50-5930-01 21 46021136 46021136 C A KRTAP10-7 Nonsense_Mutation p.C205* 0.28 TCGA-50-5930-01 21 47337540 47337540 G A PCBP3 Silent p.P238P 0.42 TCGA-50-5930-01 21 47855860 47855860 A T PCNT Missense_Mutation p.K2932M 0.37 probably_damaging(0.926) TCGA-50-5930-01 22 17072106 17072106 C A CCT8L2 Silent p.L445L 0.24 TCGA-50-5930-01 22 21989526 21989526 G T CCDC116 Missense_Mutation p.A392S 0.17 tolerated(0.14) benign(0.102) TCGA-50-5930-01 22 22550512 22550512 C A IGLV6-57 Silent p.S63S 0.27 TCGA-50-5930-01 22 22697914 22697914 C T IGLV9-49 Nonsense_Mutation p.R68* 0.26 TCGA-50-5930-01 22 23154590 23154590 G T IGLV3-10 Missense_Mutation p.W53C 0.22 deleterious(0) probably_damaging(1) TCGA-50-5930-01 22 26743766 26743766 G T SEZ6L Missense_Mutation p.R765L 0.14 deleterious(0) probably_damaging(1) TCGA-50-5930-01 22 31330044 31330044 C T MORC2 Intron 0.36 TCGA-50-5930-01 22 32044191 32044191 T A PISD Missense_Mutation p.T73S 0.27 deleterious(0.02) benign(0.303) TCGA-50-5930-01 22 39421156 39421156 T A APOBEC3D Missense_Mutation p.F98I 0.36 deleterious(0.01) possibly_damaging(0.731) TCGA-50-5930-01 22 39884213 39884213 C A MGAT3 Silent p.I287I 0.15 TCGA-50-5930-01 22 39908303 39908303 G C MIEF1 Missense_Mutation p.R130P 0.19 tolerated(0.44) benign(0.003) TCGA-50-5930-01 22 40076991 40076991 C G CACNA1I Missense_Mutation p.I1866M 0.19 tolerated(0.06) benign(0.308) TCGA-50-5930-01 22 40367030 40367030 G A GRAP2 Missense_Mutation p.R312H 0.23 deleterious(0.01) possibly_damaging(0.708) TCGA-50-5930-01 22 40757211 40757211 C - ADSL Intron 0.26 TCGA-50-5930-01 22 42180619 42180619 C A MEI1 Silent p.I1059I 0.44 TCGA-50-5930-01 22 43658774 43658774 C A SCUBE1 Missense_Mutation p.D188Y 0.27 deleterious(0) probably_damaging(0.96) TCGA-50-5930-01 22 44893104 44893104 C A LDOC1L Silent p.R111R 0.21 TCGA-50-5930-01 2 102984392 102984392 T G IL18R1 Missense_Mutation p.W56G 0.15 deleterious(0) probably_damaging(0.965) TCGA-50-5930-01 2 102984394 102984394 G T IL18R1 Missense_Mutation p.W56C 0.13 deleterious(0.01) benign(0.431) TCGA-50-5930-01 2 102992475 102992475 G T IL18R1 Nonsense_Mutation p.G193* 0.20 TCGA-50-5930-01 2 103040430 103040430 A T IL18RAP Missense_Mutation p.N77I 0.22 deleterious(0.02) benign(0.024) TCGA-50-5930-01 2 107460226 107460226 G T ST6GAL2 Missense_Mutation p.P70T 0.15 benign(0.013) TCGA-50-5930-01 2 108626899 108626899 G T SLC5A7 Missense_Mutation p.G442V 0.18 deleterious(0) probably_damaging(0.997) TCGA-50-5930-01 2 109429360 109429360 G T CCDC138 Missense_Mutation p.A340S 0.14 tolerated(0.41) possibly_damaging(0.567) TCGA-50-5930-01 2 109545792 109545792 G T EDAR Missense_Mutation p.P73H 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-50-5930-01 2 111691148 111691148 G T ACOXL Missense_Mutation p.G330W 0.19 deleterious(0) probably_damaging(1) TCGA-50-5930-01 2 111881576 111881576 G T BCL2L11 Missense_Mutation p.R85I 0.19 deleterious(0) probably_damaging(0.996) TCGA-50-5930-01 2 111921774 111921774 G T BCL2L11 Missense_Mutation p.R188L 0.20 deleterious(0.05) probably_damaging(0.979) TCGA-50-5930-01 2 113788647 113788647 A T IL36B Silent p.P33P 0.15 TCGA-50-5930-01 2 113887238 113887238 G T IL1RN Nonsense_Mutation p.E71* 0.20 TCGA-50-5930-01 2 120439338 120439338 G T TMEM177 Missense_Mutation p.R303S 0.13 deleterious(0) benign(0.035) TCGA-50-5930-01 2 121043513 121043513 G T RALB Nonsense_Mutation p.E60* 0.21 TCGA-50-5930-01 2 121747040 121747040 C A GLI2 Missense_Mutation p.P1184T 0.19 tolerated(0.22) benign(0.129) TCGA-50-5930-01 2 122206698 122206698 T C CLASP1 Splice_Site p.X508_splice 0.09 TCGA-50-5930-01 2 127950841 127950841 C A CYP27C1 Silent p.S277S 0.14 TCGA-50-5930-01 2 133721382 133721382 C G NCKAP5 Missense_Mutation p.V164L 0.18 tolerated(0.09) benign(0.081) TCGA-50-5930-01 2 135888250 135888250 G T RAB3GAP1 Nonsense_Mutation p.E399* 0.14 TCGA-50-5930-01 2 139326574 139326574 C A SPOPL Missense_Mutation p.A368E 0.18 tolerated(0.18) benign(0.049) TCGA-50-5930-01 2 141571322 141571322 C T LRP1B Missense_Mutation p.G1755R 0.09 benign(0.034) TCGA-50-5930-01 2 151326716 151326716 A C RND3 Missense_Mutation p.Y174D 0.18 deleterious(0) probably_damaging(1) TCGA-50-5930-01 2 152112121 152112121 C A RBM43 Missense_Mutation p.G47V 0.20 deleterious(0.01) probably_damaging(0.946) TCGA-50-5930-01 2 152472515 152472515 C G NEB Splice_Site p.X3763_splice 0.20 TCGA-50-5930-01 2 155711609 155711609 G T KCNJ3 Missense_Mutation p.L430F 0.16 tolerated_low_confidence(0.06) benign(0.002) TCGA-50-5930-01 2 158399247 158399247 T A ACVR1C Silent p.I357I 0.15 TCGA-50-5930-01 2 163228537 163228537 A T KCNH7 Missense_Mutation p.H1131Q 0.24 tolerated(0.12) benign(0.001) TCGA-50-5930-01 2 166514462 166514462 G C CSRNP3 Missense_Mutation p.E114Q 0.21 tolerated(0.06) possibly_damaging(0.542) TCGA-50-5930-01 2 168100182 168100182 A T XIRP2 Missense_Mutation p.E760D 0.19 probably_damaging(0.999) TCGA-50-5930-01 2 168102049 168102049 G T XIRP2 Missense_Mutation p.D1383Y 0.16 probably_damaging(0.994) TCGA-50-5930-01 2 168115599 168115599 A T XIRP2 3'UTR 0.19 TCGA-50-5930-01 2 170012785 170012785 C A LRP2 Missense_Mutation p.E4050D 0.15 benign(0.002) TCGA-50-5930-01 2 170070325 170070325 G A LRP2 Missense_Mutation p.S1961F 0.15 probably_damaging(0.954) TCGA-50-5930-01 2 170402852 170402852 T A FASTKD1 Missense_Mutation p.H526L 0.19 deleterious(0.01) benign(0.035) TCGA-50-5930-01 2 170937077 170937077 G A UBR3 Missense_Mutation p.G1811E 0.11 deleterious(0) possibly_damaging(0.776) TCGA-50-5930-01 2 171239651 171239651 C A MYO3B Silent p.I379I 0.18 TCGA-50-5930-01 2 172411085 172411085 G T CYBRD1 Silent p.T203T 0.19 TCGA-50-5930-01 2 175436887 175436887 C A WIPF1 Missense_Mutation p.G216W 0.28 deleterious(0) possibly_damaging(0.892) TCGA-50-5930-01 2 176946954 176946954 G C EVX2 Silent p.R217R 0.15 TCGA-50-5930-01 2 176959250 176959250 G T HOXD13 Missense_Mutation p.R275I 0.16 deleterious(0) possibly_damaging(0.795) TCGA-50-5930-01 2 176982218 176982218 C A HOXD10 Silent p.P219P 0.25 TCGA-50-5930-01 2 176982243 176982243 G C HOXD10 Missense_Mutation p.E228Q 0.22 tolerated(0.11) benign(0.23) TCGA-50-5930-01 2 177016726 177016726 C A HOXD4 Missense_Mutation p.P122H 0.13 tolerated(0.11) benign(0.161) TCGA-50-5930-01 2 178096090 178096090 C T NFE2L2 Missense_Mutation p.S414N 0.20 tolerated(0.29) benign(0.056) TCGA-50-5930-01 2 179432723 179432723 G T TTN Missense_Mutation p.H26046N 0.17 TCGA-50-5930-01 2 179553413 179553413 G T TTN Silent p.R10730R 0.14 TCGA-50-5930-01 2 179632584 179632584 C G TTN Missense_Mutation p.G3125R 0.17 TCGA-50-5930-01 2 179632585 179632585 A G TTN Silent p.A3124A 0.17 TCGA-50-5930-01 2 179650457 179650457 T C TTN Missense_Mutation p.T795A 0.16 TCGA-50-5930-01 2 17997962 17997962 T A MSGN1 Silent p.S59S 0.15 TCGA-50-5930-01 2 181846874 181846874 A T UBE2E3 Missense_Mutation p.Q35H 0.11 deleterious(0.01) benign(0.216) TCGA-50-5930-01 2 182360604 182360604 G C ITGA4 Missense_Mutation p.V494L 0.13 tolerated(0.15) possibly_damaging(0.772) TCGA-50-5930-01 2 182779976 182779976 G T SSFA2 Missense_Mutation p.A537S 0.15 tolerated(0.44) probably_damaging(0.999) TCGA-50-5930-01 2 183066165 183066165 C A PDE1A Splice_Site p.X391_splice 0.22 TCGA-50-5930-01 2 186671708 186671708 C A FSIP2 Missense_Mutation p.P5981H 0.16 benign(0.004) TCGA-50-5930-01 2 187558952 187558952 G T FAM171B Missense_Mutation p.V18L 0.31 tolerated_low_confidence(0.88) benign(0.001) TCGA-50-5930-01 2 187627559 187627559 G T FAM171B 3'UTR 0.10 TCGA-50-5930-01 2 189859505 189859505 G T COL3A1 Missense_Mutation p.G468V 0.14 unknown(0) TCGA-50-5930-01 2 189931188 189931188 G A COL5A2 Silent p.P497P 0.18 TCGA-50-5930-01 2 191236092 191236092 G T INPP1 Silent p.L388L 0.13 TCGA-50-5930-01 2 192011352 192011352 C A STAT4 Missense_Mutation p.R87M 0.23 deleterious(0) possibly_damaging(0.581) TCGA-50-5930-01 2 192818496 192818496 C A TMEFF2 Missense_Mutation p.G313C 0.26 deleterious(0.01) probably_damaging(1) TCGA-50-5930-01 2 197521454 197521454 A T CCDC150 Missense_Mutation p.I92F 0.21 tolerated(0.07) benign(0.099) TCGA-50-5930-01 2 197943366 197943366 C A ANKRD44 Missense_Mutation p.G571C 0.30 deleterious_low_confidence(0) benign(0) TCGA-50-5930-01 2 1983515 1983515 G T MYT1L Missense_Mutation p.T12K 0.13 deleterious(0) unknown(0) TCGA-50-5930-01 2 198950457 198950457 C A PLCL1 Missense_Mutation p.A739D 0.15 deleterious(0) possibly_damaging(0.777) TCGA-50-5930-01 2 202003310 202003310 G A CFLAR Intron 0.33 TCGA-50-5930-01 2 202672619 202672619 G T CDK15 Missense_Mutation p.L104F 0.13 tolerated(0.1) possibly_damaging(0.847) TCGA-50-5930-01 2 202712137 202712137 G T CDK15 Missense_Mutation p.Q295H 0.16 deleterious(0.04) possibly_damaging(0.894) TCGA-50-5930-01 2 20647662 20647662 G T RHOB Missense_Mutation p.A146S 0.16 tolerated(0.54) benign(0.041) TCGA-50-5930-01 2 207457460 207457460 G C ADAM23 Missense_Mutation p.S693T 0.17 tolerated(0.2) benign(0.118) TCGA-50-5930-01 2 207564597 207564597 G T DYTN Silent p.I191I 0.16 TCGA-50-5930-01 2 209028141 209028141 C A CRYGA Missense_Mutation p.Q13H 0.22 deleterious(0.01) benign(0.237) TCGA-50-5930-01 2 210558031 210558031 G T MAP2 Missense_Mutation p.M379I 0.13 tolerated_low_confidence(0.12) benign(0.002) TCGA-50-5930-01 2 210558032 210558032 G T MAP2 Missense_Mutation p.A380S 0.13 deleterious_low_confidence(0.03) benign(0.411) TCGA-50-5930-01 2 211542649 211542650 - A CPS1 Frame_Shift_Ins p.V1489Gfs*29 0.17 TCGA-50-5930-01 2 21225502 21225502 A T APOB Missense_Mutation p.D4264E 0.16 benign(0.001) TCGA-50-5930-01 2 216997068 216997068 G T XRCC5 Missense_Mutation p.M357I 0.16 tolerated(0.15) benign(0.322) TCGA-50-5930-01 2 230377606 230377606 C T DNER Missense_Mutation p.C347Y 0.21 deleterious(0) probably_damaging(1) TCGA-50-5930-01 2 230670448 230670448 G A TRIP12 Missense_Mutation p.T808I 0.15 tolerated(0.11) benign(0.001) TCGA-50-5930-01 2 231135314 231135314 T C SP140 Silent p.I486I 0.12 TCGA-50-5930-01 2 232389988 232389988 C G NMUR1 Silent p.S349S 0.12 TCGA-50-5930-01 2 233243998 233243998 C G ALPP Missense_Mutation p.D94E 0.20 tolerated(0.26) benign(0.232) TCGA-50-5930-01 2 235951595 235951595 A T SH3BP4 Missense_Mutation p.S728C 0.10 deleterious(0.05) benign(0.001) TCGA-50-5930-01 2 241702684 241702684 C A KIF1A Silent p.T616T 0.45 TCGA-50-5930-01 2 242076568 242076568 C T PASK Missense_Mutation p.A330T 0.17 tolerated(0.49) benign(0.324) TCGA-50-5930-01 2 242758351 242758351 C T NEU4 Missense_Mutation p.R491W 0.29 tolerated(0.15) benign(0.001) TCGA-50-5930-01 2 242758352 242758352 G T NEU4 Missense_Mutation p.R491L 0.29 tolerated(0.35) benign(0.001) TCGA-50-5930-01 2 24896315 24896315 G T NCOA1 Nonsense_Mutation p.G113* 0.18 TCGA-50-5930-01 2 26680771 26680771 C T OTOF 3'UTR 0.23 TCGA-50-5930-01 2 27607729 27607729 T A PPM1G Silent p.T212T 0.21 TCGA-50-5930-01 2 28113199 28113199 C A RBKS Missense_Mutation p.G5V 0.23 deleterious_low_confidence(0) probably_damaging(0.929) TCGA-50-5930-01 2 29293999 29293999 G T C2orf71 Silent p.T1043T 0.16 TCGA-50-5930-01 2 29416683 29416683 G T ALK Missense_Mutation p.L1424I 0.14 deleterious(0.04) probably_damaging(0.996) TCGA-50-5930-01 2 29462643 29462643 C A ALK Missense_Mutation p.R753L 0.11 deleterious(0) probably_damaging(0.986) TCGA-50-5930-01 2 29519873 29519873 C A ALK Missense_Mutation p.L566F 0.14 tolerated(0.09) probably_damaging(1) TCGA-50-5930-01 2 32664699 32664699 A C BIRC6 Missense_Mutation p.Q1252P 0.19 possibly_damaging(0.559) TCGA-50-5930-01 2 37234211 37234211 T G HEATR5B Silent p.R1587R 0.12 TCGA-50-5930-01 2 44139605 44139605 C A LRPPRC Missense_Mutation p.D1081Y 0.18 deleterious(0.01) possibly_damaging(0.594) TCGA-50-5930-01 2 46574080 46574080 A T EPAS1 Missense_Mutation p.E32V 0.14 deleterious(0) probably_damaging(0.993) TCGA-50-5930-01 2 53927540 53927540 C A ASB3 Missense_Mutation p.C404F 0.12 deleterious(0.02) possibly_damaging(0.519) TCGA-50-5930-01 2 69172399 69172399 C A GKN2 3'UTR 0.12 TCGA-50-5930-01 2 69633215 69633215 C A NFU1 Splice_Site p.X162_splice 0.18 TCGA-50-5930-01 2 71654172 71654172 C T ZNF638 Nonsense_Mutation p.Q1725* 0.20 TCGA-50-5930-01 2 71913650 71913650 G C DYSF 3'UTR 0.24 TCGA-50-5930-01 2 72371317 72371317 C A CYP26B1 Missense_Mutation p.R77M 0.13 deleterious(0.02) probably_damaging(0.938) TCGA-50-5930-01 2 73467590 73467590 G T CCT7 Silent p.G62G 0.17 TCGA-50-5930-01 2 74901732 74901732 G T SEMA4F Missense_Mutation p.Q310H 0.18 deleterious(0.01) possibly_damaging(0.866) TCGA-50-5930-01 2 79312309 79312309 G T REG1B 3'UTR 0.09 TCGA-50-5930-01 2 79385541 79385541 C A REG3A Missense_Mutation p.G82W 0.18 deleterious(0) possibly_damaging(0.823) TCGA-50-5930-01 2 85628971 85628971 C A CAPG Missense_Mutation p.G45W 0.13 deleterious(0) probably_damaging(1) TCGA-50-5930-01 2 86292455 86292455 C T POLR1A Missense_Mutation p.R667H 0.20 tolerated(0.05) benign(0.258) TCGA-50-5930-01 2 88396235 88396235 T A SMYD1 Missense_Mutation p.C274S 0.14 deleterious(0) probably_damaging(1) TCGA-50-5930-01 2 88478421 88478421 C G THNSL2 Missense_Mutation p.Q231E 0.23 deleterious(0) probably_damaging(0.98) TCGA-50-5930-01 2 90192981 90192981 C A IGKV1D-13 Missense_Mutation p.L12I 0.14 tolerated(0.09) probably_damaging(0.955) TCGA-50-5930-01 3 100484767 100484767 C T ABI3BP Missense_Mutation p.G879R 0.26 deleterious(0) probably_damaging(0.999) TCGA-50-5930-01 3 101283658 101283658 C T TRMT10C Silent p.V11V 0.12 TCGA-50-5930-01 3 110841084 110841084 A G PVRL3 Missense_Mutation p.R306G 0.10 deleterious(0) probably_damaging(0.946) TCGA-50-5930-01 3 114014612 114014612 C A TIGIT Silent p.T94T 0.29 TCGA-50-5930-01 3 119248751 119248751 G - CD80 Frame_Shift_Del p.P245Hfs*7 0.23 TCGA-50-5930-01 3 119428706 119428706 A T MAATS1 Missense_Mutation p.Q155L 0.13 deleterious(0.02) benign(0.36) TCGA-50-5930-01 3 119530467 119530467 T A NR1I2 Missense_Mutation p.L177Q 0.14 tolerated(0.36) benign(0.002) TCGA-50-5930-01 3 120347097 120347097 C A HGD 3'UTR 0.23 TCGA-50-5930-01 3 121137303 121137303 C G STXBP5L Missense_Mutation p.R1140G 0.17 deleterious(0) possibly_damaging(0.778) TCGA-50-5930-01 3 121410889 121410889 T C GOLGB1 Missense_Mutation p.D2441G 0.19 benign(0.05) TCGA-50-5930-01 3 121413956 121413956 T A GOLGB1 Missense_Mutation p.Q1805L 0.20 benign(0.363) TCGA-50-5930-01 3 124951844 124951851 AAGAATTT - ZNF148 Frame_Shift_Del p.N574Rfs*22 0.16 TCGA-50-5930-01 3 126382277 126382277 C A NUP210P1 RNA 0.35 TCGA-50-5930-01 3 126708322 126708322 G T PLXNA1 Missense_Mutation p.V296F 0.12 deleterious(0) probably_damaging(1) TCGA-50-5930-01 3 1269516 1269516 G T CNTN6 Missense_Mutation p.G66V 0.19 deleterious(0) probably_damaging(0.966) TCGA-50-5930-01 3 128758557 128758557 G T EFCC1 Nonsense_Mutation p.G555* 0.14 TCGA-50-5930-01 3 129140492 129140492 C G EFCAB12 Missense_Mutation p.Q68H 0.08 tolerated(0.36) possibly_damaging(0.54) TCGA-50-5930-01 3 130437272 130437272 C A PIK3R4 Missense_Mutation p.M696I 0.12 tolerated(0.23) benign(0.007) TCGA-50-5930-01 3 131306344 131306344 G A CPNE4 Missense_Mutation p.A255V 0.21 tolerated(0.11) benign(0.223) TCGA-50-5930-01 3 132036383 132036383 G T ACPP Missense_Mutation p.R28L 0.20 tolerated(0.13) benign(0.13) TCGA-50-5930-01 3 133495917 133495917 G T TF Missense_Mutation p.D633Y 0.16 deleterious(0) benign(0.345) TCGA-50-5930-01 3 139173634 139173634 C A RBP2 Silent p.V97V 0.23 TCGA-50-5930-01 3 140407035 140407035 T A TRIM42 Missense_Mutation p.L504Q 0.19 tolerated(0.6) benign(0.146) TCGA-50-5930-01 3 140407339 140407339 C A TRIM42 Silent p.G605G 0.10 TCGA-50-5930-01 3 140419863 140419863 A T TRIM42 3'UTR 0.31 TCGA-50-5930-01 3 14564539 14564539 C A GRIP2 RNA 0.31 TCGA-50-5930-01 3 147113932 147113932 C A ZIC4 Missense_Mutation p.W182L 0.17 deleterious(0) probably_damaging(0.993) TCGA-50-5930-01 3 151163195 151163195 G T IGSF10 Missense_Mutation p.S1525Y 0.23 deleterious(0.02) possibly_damaging(0.781) TCGA-50-5930-01 3 151171193 151171193 C A IGSF10 Missense_Mutation p.D232Y 0.16 deleterious(0) probably_damaging(0.917) TCGA-50-5930-01 3 155861203 155861203 C A KCNAB1 Intron 0.17 TCGA-50-5930-01 3 15683559 15683559 A T BTD Missense_Mutation p.T152S 0.43 tolerated(0.18) possibly_damaging(0.859) TCGA-50-5930-01 3 158545093 158545093 G T MFSD1 Missense_Mutation p.R503I 0.09 tolerated(0.12) benign(0.016) TCGA-50-5930-01 3 166958493 166958493 C A ZBBX 3'UTR 0.09 TCGA-50-5930-01 3 170011186 170011186 G T PRKCI Missense_Mutation p.W436L 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-50-5930-01 3 170079032 170079032 A T SKIL Missense_Mutation p.M305L 0.18 tolerated(0.12) probably_damaging(0.99) TCGA-50-5930-01 3 170099060 170099060 A T SKIL Missense_Mutation p.Q376L 0.20 tolerated(0.18) benign(0.001) TCGA-50-5930-01 3 172166174 172166174 C A GHSR Silent p.P10P 0.31 TCGA-50-5930-01 3 178748669 178748669 T A ZMAT3 Missense_Mutation p.Q130L 0.16 deleterious(0.04) benign(0.17) TCGA-50-5930-01 3 179605471 179605471 G T PEX5L Silent p.S100S 0.15 TCGA-50-5930-01 3 182810278 182810278 C A MCCC1 Silent p.V64V 0.18 TCGA-50-5930-01 3 184104519 184104519 G T CHRD Silent p.P724P 0.32 TCGA-50-5930-01 3 184294872 184294872 A G EPHB3 Missense_Mutation p.T419A 0.16 tolerated(0.22) possibly_damaging(0.734) TCGA-50-5930-01 3 184298349 184298349 G T EPHB3 Missense_Mutation p.G778C 0.10 deleterious(0) probably_damaging(0.998) TCGA-50-5930-01 3 186038276 186038276 G A DGKG 5'UTR 0.17 TCGA-50-5930-01 3 186383976 186383976 G T HRG Silent p.R52R 0.28 TCGA-50-5930-01 3 186435316 186435316 G T KNG1 5'UTR 0.16 TCGA-50-5930-01 3 186572274 186572274 G T ADIPOQ Missense_Mutation p.K172N 0.14 deleterious(0.03) probably_damaging(0.955) TCGA-50-5930-01 3 186937996 186937996 T A MASP1 Nonsense_Mutation p.R655* 0.30 TCGA-50-5930-01 3 186953828 186953828 G T MASP1 Silent p.R611R 0.23 TCGA-50-5930-01 3 186953901 186953901 C A MASP1 Missense_Mutation p.M586I 0.08 tolerated(0.19) benign(0.002) TCGA-50-5930-01 3 190122628 190122628 G T CLDN16 Missense_Mutation p.G169C 0.20 deleterious(0) probably_damaging(1) TCGA-50-5930-01 3 194081118 194081118 C A LRRC15 Missense_Mutation p.G225W 0.11 deleterious(0) possibly_damaging(0.873) TCGA-50-5930-01 3 195300747 195300747 C A APOD Missense_Mutation p.K73N 0.19 tolerated(0.57) benign(0.006) TCGA-50-5930-01 3 195959296 195959296 C A SLC51A Missense_Mutation p.L263I 0.24 deleterious(0.01) possibly_damaging(0.665) TCGA-50-5930-01 3 196533538 196533538 G T PAK2 Missense_Mutation p.R186L 0.21 deleterious(0.04) possibly_damaging(0.868) TCGA-50-5930-01 3 196627254 196627254 G T SENP5 Nonsense_Mutation p.E593* 0.13 TCGA-50-5930-01 3 197556495 197556495 G T LRCH3 Missense_Mutation p.A280S 0.09 tolerated(0.21) possibly_damaging(0.611) TCGA-50-5930-01 3 197562618 197562618 G T LRCH3 Missense_Mutation p.Q392H 0.24 tolerated(0.05) possibly_damaging(0.601) TCGA-50-5930-01 3 20019888 20019888 G T RAB5A Missense_Mutation p.M175I 0.55 tolerated(0.27) benign(0.003) TCGA-50-5930-01 3 38892224 38892224 C A SCN11A Missense_Mutation p.V1359L 0.32 tolerated(0.3) benign(0.25) TCGA-50-5930-01 3 46542095 46542095 G A RTP3 Silent p.E135E 0.26 TCGA-50-5930-01 3 46751145 46751145 G A TMIE Silent p.K146K 0.25 TCGA-50-5930-01 3 47537584 47537584 T A ELP6 Missense_Mutation p.K259I 0.20 deleterious(0.01) possibly_damaging(0.498) TCGA-50-5930-01 3 49692724 49692724 G T BSN Missense_Mutation p.S1912I 0.35 unknown(0) TCGA-50-5930-01 3 49896755 49896755 C A CAMKV Missense_Mutation p.S501I 0.33 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-50-5930-01 3 51971226 51971226 C T RRP9 Missense_Mutation p.D167N 0.40 deleterious(0.03) probably_damaging(0.968) TCGA-50-5930-01 3 57274570 57274570 A G APPL1 Silent p.R121R 0.21 TCGA-50-5930-01 3 64085118 64085118 G A PRICKLE2 Missense_Mutation p.P715L 0.20 tolerated(0.23) possibly_damaging(0.489) TCGA-50-5930-01 3 64640126 64640126 C A ADAMTS9 Nonsense_Mutation p.E407* 0.38 TCGA-50-5930-01 3 69078995 69078995 C A TMF1 Missense_Mutation p.R855S 0.10 deleterious(0) benign(0.158) TCGA-50-5930-01 3 69084217 69084217 C A TMF1 Missense_Mutation p.R734I 0.29 deleterious(0) probably_damaging(0.98) TCGA-50-5930-01 3 73432828 73432828 C T PDZRN3 Silent p.A963A 0.13 TCGA-50-5930-01 3 73439018 73439018 G T PDZRN3 Missense_Mutation p.N455K 0.19 deleterious(0) probably_damaging(0.93) TCGA-50-5930-01 3 73453360 73453360 C A PDZRN3 Missense_Mutation p.A369S 0.17 deleterious(0.01) benign(0.058) TCGA-50-5930-01 3 77607164 77607164 C G ROBO2 Missense_Mutation p.T450R 0.39 deleterious(0) possibly_damaging(0.803) TCGA-50-5930-01 3 77684114 77684114 C A ROBO2 Missense_Mutation p.P1301H 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.893) TCGA-50-5930-01 3 8775586 8775586 T A CAV3 Missense_Mutation p.D8E 0.33 tolerated_low_confidence(0.99) benign(0.003) TCGA-50-5930-01 3 89498522 89498522 G T EPHA3 Missense_Mutation p.D832Y 0.37 deleterious(0) probably_damaging(1) TCGA-50-5930-01 3 98109938 98109938 G T OR5K3 Missense_Mutation p.Q143H 0.28 deleterious(0.04) benign(0.111) TCGA-50-5930-01 3 99514928 99514928 C T COL8A1 Missense_Mutation p.A728V 0.10 deleterious(0) probably_damaging(0.996) TCGA-50-5930-01 4 100235240 100235240 T A ADH1B Splice_Site p.X190_splice 0.36 TCGA-50-5930-01 4 10445675 10445675 C G ZNF518B Missense_Mutation p.V760L 0.09 tolerated(0.46) benign(0.002) TCGA-50-5930-01 4 109810384 109810384 C A COL25A1 Missense_Mutation p.G323V 0.29 deleterious(0) probably_damaging(1) TCGA-50-5930-01 4 111441439 111441439 C A ENPEP Missense_Mutation p.N548K 0.37 tolerated(0.37) benign(0.007) TCGA-50-5930-01 4 113436203 113436203 G C NEUROG2 Silent p.P143P 0.23 TCGA-50-5930-01 4 115597124 115597124 C G UGT8 Missense_Mutation p.Q436E 0.36 deleterious(0.02) probably_damaging(0.996) TCGA-50-5930-01 4 119952205 119952205 G C SYNPO2 Missense_Mutation p.V759L 0.31 deleterious(0.01) possibly_damaging(0.843) TCGA-50-5930-01 4 123187949 123187949 G T KIAA1109 Missense_Mutation p.K2443N 0.29 benign(0.193) TCGA-50-5930-01 4 155157033 155157033 G A DCHS2 Missense_Mutation p.P2469L 0.25 deleterious(0.05) benign(0.026) TCGA-50-5930-01 4 156711052 156711052 A G GUCY1B3 Missense_Mutation p.I162V 0.05 tolerated(1) benign(0.009) TCGA-50-5930-01 4 159568059 159568059 G - RXFP1 Frame_Shift_Del p.V488* 0.24 TCGA-50-5930-01 4 162508727 162508727 C A FSTL5 Missense_Mutation p.D299Y 0.19 deleterious(0) probably_damaging(0.997) TCGA-50-5930-01 4 17585150 17585150 G T LAP3 Missense_Mutation p.V142L 0.23 tolerated(0.19) benign(0.169) TCGA-50-5930-01 4 183714173 183714173 G C TENM3 Missense_Mutation p.E2116D 0.15 tolerated(0.32) possibly_damaging(0.636) TCGA-50-5930-01 4 188924071 188924071 A T ZFP42 Missense_Mutation p.Q37L 0.11 tolerated(0.14) benign(0.057) TCGA-50-5930-01 4 264686 264686 G T ZNF732 3'UTR 0.33 TCGA-50-5930-01 4 3240633 3240633 C T HTT Missense_Mutation p.P3048L 0.28 probably_damaging(0.974) TCGA-50-5930-01 4 37831647 37831647 G A PGM2 Missense_Mutation p.R48Q 0.19 tolerated(0.37) benign(0.001) TCGA-50-5930-01 4 38775478 38775478 C - TLR10 Frame_Shift_Del p.L579* 0.28 TCGA-50-5930-01 4 38799443 38799443 C T TLR1 Missense_Mutation p.R337H 0.38 tolerated(0.48) benign(0.001) TCGA-50-5930-01 4 46053574 46053574 A G GABRG1 Missense_Mutation p.M333T 0.37 deleterious(0) probably_damaging(0.968) TCGA-50-5930-01 4 55138667 55138667 G T PDGFRA Missense_Mutation p.M448I 0.30 tolerated(0.14) benign(0.008) TCGA-50-5930-01 4 5642298 5642298 C G EVC2 Missense_Mutation p.Q471H 0.31 deleterious(0) probably_damaging(0.983) TCGA-50-5930-01 4 5844884 5844884 T A CRMP1 Missense_Mutation p.Q323L 0.32 tolerated(0.05) possibly_damaging(0.837) TCGA-50-5930-01 4 6064087 6064087 C T JAKMIP1 Silent p.L504L 0.37 TCGA-50-5930-01 4 62778441 62778441 A G LPHN3 Missense_Mutation p.Q625R 0.31 tolerated(0.09) benign(0.115) TCGA-50-5930-01 4 6380181 6380181 T A PPP2R2C Missense_Mutation p.K96M 0.26 deleterious(0) possibly_damaging(0.749) TCGA-50-5930-01 4 69693235 69693235 A T UGT2B10 Missense_Mutation p.N426Y 0.20 deleterious(0) possibly_damaging(0.799) TCGA-50-5930-01 4 72620763 72620763 C A GC Nonsense_Mutation p.E385* 0.37 TCGA-50-5930-01 4 73990707 73990707 C A ANKRD17 Missense_Mutation p.G1139C 0.36 probably_damaging(0.978) TCGA-50-5930-01 4 74005550 74005550 C G ANKRD17 Missense_Mutation p.R928P 0.29 benign(0.008) TCGA-50-5930-01 4 75231011 75231011 C A EREG 5'UTR 0.29 TCGA-50-5930-01 4 79799977 79799977 G T BMP2K Missense_Mutation p.G628V 0.34 deleterious(0) unknown(0) TCGA-50-5930-01 4 8079423 8079423 C A ABLIM2 Missense_Mutation p.D203Y 0.38 deleterious(0) probably_damaging(1) TCGA-50-5930-01 4 87770143 87770143 C A SLC10A6 Missense_Mutation p.M42I 0.33 tolerated(0.09) benign(0.011) TCGA-50-5930-01 4 90170590 90170590 C T GPRIN3 Silent p.Q224Q 0.35 TCGA-50-5930-01 4 94750797 94750797 C A ATOH1 Silent p.T240T 0.46 TCGA-50-5930-01 4 96761505 96761505 T A PDHA2 Silent p.T68T 0.20 TCGA-50-5930-01 4 96761674 96761674 C A PDHA2 Silent p.R125R 0.29 TCGA-50-5930-01 5 107197455 107197455 C A FBXL17 Missense_Mutation p.G691V 0.11 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-50-5930-01 5 112173738 112173738 C T APC Missense_Mutation p.T816I 0.11 benign(0.002) TCGA-50-5930-01 5 112769800 112769800 T A TSSK1B Missense_Mutation p.K246M 0.20 deleterious(0) possibly_damaging(0.862) TCGA-50-5930-01 5 112903395 112903395 C T YTHDC2 Silent p.P1031P 0.16 TCGA-50-5930-01 5 118811403 118811403 G T HSD17B4 Missense_Mutation p.V120F 0.16 deleterious(0) possibly_damaging(0.872) TCGA-50-5930-01 5 118970310 118970310 G A FAM170A Silent p.E289E 0.18 TCGA-50-5930-01 5 126168413 126168413 A T LMNB1 Nonsense_Mutation p.K547* 0.11 TCGA-50-5930-01 5 127654588 127654588 G T FBN2 Missense_Mutation p.T1526K 0.16 deleterious(0.01) benign(0.309) TCGA-50-5930-01 5 127800498 127800498 G C FBN2 Missense_Mutation p.H249D 0.11 tolerated(0.13) possibly_damaging(0.803) TCGA-50-5930-01 5 134782804 134782804 G T TIFAB 3'UTR 0.15 TCGA-50-5930-01 5 136315111 136315111 G T SPOCK1 Missense_Mutation p.Q347K 0.09 deleterious(0) probably_damaging(0.992) TCGA-50-5930-01 5 137754725 137754725 A G KDM3B Silent p.P1173P 0.26 TCGA-50-5930-01 5 139062551 139062551 G T CXXC5 3'UTR 0.27 TCGA-50-5930-01 5 139682658 139682658 T C PFDN1 Translation_Start_Site p.M1? 0.16 deleterious(0) possibly_damaging(0.888) TCGA-50-5930-01 5 140180926 140180926 C T PCDHA3 Silent p.I48I 0.14 TCGA-50-5930-01 5 140181051 140181051 T A PCDHA3 Missense_Mutation p.I90K 0.20 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-50-5930-01 5 140181955 140181955 C A PCDHA3 Silent p.P391P 0.18 TCGA-50-5930-01 5 140209300 140209300 G T PCDHA6 Missense_Mutation p.V542L 0.08 tolerated_low_confidence(0.15) benign(0.247) TCGA-50-5930-01 5 140216249 140216249 G A PCDHA7 Missense_Mutation p.G761R 0.09 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-50-5930-01 5 140237858 140237858 C T PCDHA10 Missense_Mutation p.A742V 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.887) TCGA-50-5930-01 5 140558441 140558441 G T PCDHB8 Nonsense_Mutation p.G276* 0.21 TCGA-50-5930-01 5 140559694 140559694 G T PCDHB8 Silent p.V693V 0.16 TCGA-50-5930-01 5 140559894 140559894 C G PCDHB8 Nonsense_Mutation p.S760* 0.15 TCGA-50-5930-01 5 140594551 140594551 T A PCDHB13 Missense_Mutation p.S286T 0.13 tolerated(0.08) benign(0.064) TCGA-50-5930-01 5 140744934 140744934 A T PCDHGA5 Missense_Mutation p.E346V 0.18 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-50-5930-01 5 140746034 140746034 G T PCDHGA5 Missense_Mutation p.V713L 0.15 deleterious_low_confidence(0.01) benign(0.043) TCGA-50-5930-01 5 14498735 14498735 G T TRIO Missense_Mutation p.S2773I 0.05 unknown(0) TCGA-50-5930-01 5 145557110 145557110 C T LARS Missense_Mutation p.S42N 0.21 tolerated(0.58) benign(0.003) TCGA-50-5930-01 5 148421079 148421079 C A SH3TC2 Missense_Mutation p.A211S 0.22 tolerated(0.8) benign(0.004) TCGA-50-5930-01 5 149583541 149583541 G C SLC6A7 Silent p.A424A 0.10 TCGA-50-5930-01 5 149676788 149676788 G A ARSI Nonsense_Mutation p.Q567* 0.11 TCGA-50-5930-01 5 149932812 149932812 A T NDST1 Missense_Mutation p.N856I 0.18 deleterious(0.03) probably_damaging(1) TCGA-50-5930-01 5 151047042 151047042 T A SPARC Nonsense_Mutation p.K191* 0.12 TCGA-50-5930-01 5 160972276 160972276 T C GABRB2 Missense_Mutation p.N65S 0.16 tolerated(0.97) benign(0.01) TCGA-50-5930-01 5 161569237 161569237 C A GABRG2 Silent p.T319T 0.17 TCGA-50-5930-01 5 16673924 16673924 T C MYO10 Missense_Mutation p.K1680R 0.47 tolerated(0.34) probably_damaging(0.995) TCGA-50-5930-01 5 168175409 168175409 G T SLIT3 Missense_Mutation p.P723Q 0.12 tolerated(0.14) possibly_damaging(0.627) TCGA-50-5930-01 5 169015554 169015554 G A SPDL1 Missense_Mutation p.R45H 0.20 tolerated(0.1) possibly_damaging(0.803) TCGA-50-5930-01 5 169018131 169018131 G A SPDL1 Missense_Mutation p.C80Y 0.14 tolerated(0.36) possibly_damaging(0.785) TCGA-50-5930-01 5 170883654 170883654 G T FGF18 Missense_Mutation p.G157W 0.12 deleterious(0) probably_damaging(0.999) TCGA-50-5930-01 5 172513541 172513541 C T CREBRF Missense_Mutation p.A16V 0.17 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-50-5930-01 5 174869848 174869848 C T DRD1 Silent p.E85E 0.23 TCGA-50-5930-01 5 176024651 176024651 G A GPRIN1 Missense_Mutation p.R729C 0.18 deleterious(0) benign(0.157) TCGA-50-5930-01 5 178392119 178392119 C A ZNF454 Missense_Mutation p.H238Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-50-5930-01 5 178413230 178413230 G A GRM6 Silent p.I675I 0.24 TCGA-50-5930-01 5 1816041 1816041 A C NDUFS6 3'UTR 0.09 TCGA-50-5930-01 5 22078889 22078889 T G CDH12 5'UTR 0.45 TCGA-50-5930-01 5 24491713 24491713 G T CDH10 Silent p.A616A 0.09 TCGA-50-5930-01 5 33683993 33683993 C A ADAMTS12 Nonsense_Mutation p.E268* 0.12 TCGA-50-5930-01 5 34035767 34035767 G T C1QTNF3 Missense_Mutation p.P134T 0.40 tolerated(0.15) benign(0.207) TCGA-50-5930-01 5 34863077 34863077 T A TTC23L Missense_Mutation p.S152T 0.48 tolerated(0.14) benign(0.099) TCGA-50-5930-01 5 35649493 35649493 G T SPEF2 Missense_Mutation p.A253S 0.44 tolerated(0.46) probably_damaging(0.994) TCGA-50-5930-01 5 35727904 35727904 T C SPEF2 Silent p.Y1014Y 0.10 TCGA-50-5930-01 5 37815991 37815991 C A GDNF Missense_Mutation p.G150V 0.39 deleterious(0) probably_damaging(1) TCGA-50-5930-01 5 38451483 38451483 G A EGFLAM Silent p.L878L 0.11 TCGA-50-5930-01 5 40976867 40976867 A T C7 Missense_Mutation p.Q697L 0.27 tolerated(0.14) benign(0.001) TCGA-50-5930-01 5 41158800 41158800 A T C6 Silent p.V648V 0.10 TCGA-50-5930-01 5 41160261 41160261 G T C6 Missense_Mutation p.S556Y 0.10 deleterious(0) possibly_damaging(0.736) TCGA-50-5930-01 5 41382018 41382018 G T PLCXD3 Nonsense_Mutation p.S241* 0.45 TCGA-50-5930-01 5 54527328 54527328 C A CCNO Nonsense_Mutation p.E310* 0.14 TCGA-50-5930-01 5 5463336 5463336 G T KIAA0947 Nonsense_Mutation p.E1297* 0.39 TCGA-50-5930-01 5 55111240 55111240 G T DDX4 Missense_Mutation p.D696Y 0.15 deleterious(0) probably_damaging(0.95) TCGA-50-5930-01 5 63256798 63256798 G T HTR1A Missense_Mutation p.P250H 0.20 tolerated(0.3) benign(0.003) TCGA-50-5930-01 5 71411623 71411623 C A MAP1B Missense_Mutation p.P95T 0.25 unknown(0) TCGA-50-5930-01 5 71756786 71756786 C A ZNF366 Missense_Mutation p.V180F 0.19 deleterious_low_confidence(0.04) benign(0.324) TCGA-50-5930-01 5 72419371 72419371 G T TMEM171 Missense_Mutation p.M57I 0.11 tolerated(0.34) benign(0.006) TCGA-50-5930-01 5 73931223 73931223 G C ENC1 Missense_Mutation p.T363S 0.22 tolerated(0.91) possibly_damaging(0.702) TCGA-50-5930-01 5 75893300 75893301 - A IQGAP2 Frame_Shift_Ins p.E316Gfs*3 0.20 TCGA-50-5930-01 5 79817825 79817825 A T FAM151B Missense_Mutation p.Y180F 0.19 deleterious(0) probably_damaging(0.967) TCGA-50-5930-01 5 82834388 82834388 G T VCAN Missense_Mutation p.V1856L 0.19 tolerated(1) benign(0) TCGA-50-5930-01 5 82834807 82834807 C A VCAN Missense_Mutation p.S1995R 0.18 deleterious(0) possibly_damaging(0.878) TCGA-50-5930-01 5 83356224 83356224 G T EDIL3 Silent p.L344L 0.16 TCGA-50-5930-01 5 889153 889163 ACTTGTATTCA - BRD9 Frame_Shift_Del p.E194Sfs*5 0.36 TCGA-50-5930-01 5 896838 896838 G T TRIP13 Missense_Mutation p.G106V 0.47 deleterious(0) benign(0.41) TCGA-50-5930-01 5 89933649 89933649 C T GPR98 Silent p.G708G 0.14 TCGA-50-5930-01 5 9066597 9066598 - A SEMA5A Frame_Shift_Ins p.R747Kfs*11 0.33 TCGA-50-5930-01 5 94803690 94803690 C G TTC37 Missense_Mutation p.E1500D 0.11 tolerated(0.09) benign(0.02) TCGA-50-5930-01 5 95234453 95234453 T A ELL2 Missense_Mutation p.H339L 0.14 deleterious(0.02) probably_damaging(0.974) TCGA-50-5930-01 5 95728808 95728808 A T PCSK1 Missense_Mutation p.L720Q 0.17 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-50-5930-01 5 96350769 96350769 G T LNPEP Silent p.L782L 0.19 TCGA-50-5930-01 6 100368954 100368954 G A MCHR2 Silent p.S295S 0.20 TCGA-50-5930-01 6 102372501 102372501 C A GRIK2 Missense_Mutation p.P592T 0.16 deleterious(0) benign(0.314) TCGA-50-5930-01 6 109962813 109962813 T A AK9 Missense_Mutation p.M281L 0.30 tolerated(0.15) benign(0.004) TCGA-50-5930-01 6 129786390 129786390 A T LAMA2 Missense_Mutation p.D2419V 0.17 deleterious(0) probably_damaging(1) TCGA-50-5930-01 6 129786409 129786409 C A LAMA2 Missense_Mutation p.F2425L 0.13 tolerated(0.41) benign(0.174) TCGA-50-5930-01 6 132043462 132043462 G T ENPP3 Nonsense_Mutation p.E555* 0.10 TCGA-50-5930-01 6 132168933 132168933 G T ENPP1 Silent p.V86V 0.15 TCGA-50-5930-01 6 133846166 133846166 T G EYA4 Intron 0.17 TCGA-50-5930-01 6 136904770 136904770 T A MAP3K5 Nonsense_Mutation p.K1112* 0.21 TCGA-50-5930-01 6 137466887 137466887 A T IL22RA2 Silent p.A222A 0.19 TCGA-50-5930-01 6 139694781 139694781 G A CITED2 Missense_Mutation p.P101S 0.18 tolerated(0.42) benign(0.004) TCGA-50-5930-01 6 144806654 144806654 A T UTRN Missense_Mutation p.E1274V 0.14 deleterious(0) probably_damaging(0.998) TCGA-50-5930-01 6 151334956 151334956 G T MTHFD1L Missense_Mutation p.E769D 0.14 deleterious(0.01) probably_damaging(0.914) TCGA-50-5930-01 6 151672172 151672172 G A AKAP12 Silent p.K882K 0.17 TCGA-50-5930-01 6 152614770 152614770 T A SYNE1 Missense_Mutation p.S5989C 0.15 benign(0.013) TCGA-50-5930-01 6 15410553 15410553 G C JARID2 Missense_Mutation p.D94H 0.10 tolerated(0.09) possibly_damaging(0.879) TCGA-50-5930-01 6 15501420 15501420 A T JARID2 Missense_Mutation p.N743I 0.18 tolerated(0.3) benign(0.005) TCGA-50-5930-01 6 155450812 155450812 C A TIAM2 Missense_Mutation p.P152Q 0.12 tolerated_low_confidence(0.14) benign(0.012) TCGA-50-5930-01 6 159653416 159653416 G T FNDC1 Silent p.A624A 0.18 TCGA-50-5930-01 6 160234689 160234689 G A PNLDC1 Splice_Site p.X321_splice 0.11 TCGA-50-5930-01 6 160328223 160328223 C T MAS1 Missense_Mutation p.S79L 0.11 tolerated(0.65) benign(0.026) TCGA-50-5930-01 6 160485548 160485548 C A IGF2R Missense_Mutation p.D1334E 0.14 deleterious(0) probably_damaging(0.998) TCGA-50-5930-01 6 165715486 165715486 G T C6orf118 Missense_Mutation p.L109M 0.17 tolerated(0.06) probably_damaging(0.989) TCGA-50-5930-01 6 167571216 167571216 G A GPR31 Missense_Mutation p.A35V 0.13 deleterious(0) probably_damaging(0.915) TCGA-50-5930-01 6 25966891 25966891 A T TRIM38 Silent p.P47P 0.16 TCGA-50-5930-01 6 26463516 26463516 G T BTN2A1 Missense_Mutation p.G159W 0.17 deleterious(0) probably_damaging(1) TCGA-50-5930-01 6 26597220 26597220 G T ABT1 Nonsense_Mutation p.E4* 0.40 TCGA-50-5930-01 6 27368846 27368846 C T ZNF391 Missense_Mutation p.R233C 0.16 tolerated(0.13) benign(0.304) TCGA-50-5930-01 6 28219570 28219570 C T ZKSCAN4 Silent p.E63E 0.16 TCGA-50-5930-01 6 30558147 30558147 A G ABCF1 Missense_Mutation p.Y788C 0.16 deleterious(0) benign(0.094) TCGA-50-5930-01 6 33141504 33141504 C A COL11A2 Missense_Mutation p.G782C 0.19 probably_damaging(0.984) TCGA-50-5930-01 6 33410907 33410907 G C SYNGAP1 Missense_Mutation p.V860L 0.20 tolerated(0.22) benign(0.22) TCGA-50-5930-01 6 397170 397170 G T IRF4 Missense_Mutation p.Q185H 0.32 tolerated(0.06) probably_damaging(0.91) TCGA-50-5930-01 6 4128035 4128035 C A ECI2 Missense_Mutation p.A178S 0.35 tolerated(0.62) benign(0.078) TCGA-50-5930-01 6 43030663 43030663 G T KLC4 Silent p.L107L 0.22 TCGA-50-5930-01 6 43608187 43608187 G - MAD2L1BP Frame_Shift_Del p.G280Afs*20 0.09 TCGA-50-5930-01 6 44270227 44270227 C A AARS2 Silent p.L796L 0.12 TCGA-50-5930-01 6 44336233 44336233 C G SPATS1 Nonsense_Mutation p.S231* 0.18 TCGA-50-5930-01 6 47682674 47682674 C G GPR115 Missense_Mutation p.P565A 0.11 deleterious(0.01) probably_damaging(1) TCGA-50-5930-01 6 47846231 47846231 T G PTCHD4 Silent p.T783T 0.21 TCGA-50-5930-01 6 50681733 50681733 G T TFAP2D 5'UTR 0.08 TCGA-50-5930-01 6 51892955 51892955 C A PKHD1 Missense_Mutation p.G1187W 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-50-5930-01 6 53374019 53374019 C A GCLC Missense_Mutation p.E261D 0.16 deleterious(0.03) probably_damaging(0.996) TCGA-50-5930-01 6 56857308 56857308 C A BEND6 Silent p.R85R 0.16 TCGA-50-5930-01 6 70942429 70942429 C A COL9A1 Missense_Mutation p.G787V 0.26 probably_damaging(0.997) TCGA-50-5930-01 6 74072904 74072904 G T KHDC3L Nonsense_Mutation p.E86* 0.13 TCGA-50-5930-01 6 7575650 7575650 G A DSP Silent p.L853L 0.16 TCGA-50-5930-01 6 75825563 75825563 C A COL12A1 Missense_Mutation p.G2545V 0.23 probably_damaging(1) TCGA-50-5930-01 6 80750370 80750370 G T TTK Missense_Mutation p.G814C 0.33 deleterious(0) possibly_damaging(0.873) TCGA-50-5930-01 6 84862454 84862454 C A KIAA1009 Missense_Mutation p.A1147S 0.10 tolerated(0.79) benign(0.032) TCGA-50-5930-01 6 86200261 86200261 C A NT5E Missense_Mutation p.P416T 0.18 deleterious(0) probably_damaging(0.999) TCGA-50-5930-01 6 89614445 89614445 G A RNGTT Missense_Mutation p.R225W 0.15 tolerated(0.19) benign(0.003) TCGA-50-5930-01 6 90453325 90453325 C T MDN1 Silent p.L1429L 0.16 TCGA-50-5930-01 6 94068121 94068121 G T EPHA7 Missense_Mutation p.R281S 0.09 tolerated(0.41) benign(0.157) TCGA-50-5930-01 6 96990865 96990865 G C UFL1 Missense_Mutation p.D459H 0.17 deleterious(0) probably_damaging(0.952) TCGA-50-5930-01 6 97063497 97063497 C A FHL5 Missense_Mutation p.A235D 0.12 tolerated(0.07) benign(0.048) TCGA-50-5930-01 6 97561897 97561897 A T KLHL32 Missense_Mutation p.D289V 0.13 tolerated(0.28) benign(0.05) TCGA-50-5930-01 6 99374599 99374599 C A FBXL4 Missense_Mutation p.G89V 0.18 deleterious(0) probably_damaging(1) TCGA-50-5930-01 7 100197671 100197671 G T FBXO24 Silent p.R446R 0.28 TCGA-50-5930-01 7 100275138 100275138 G A GNB2 Silent p.L95L 0.33 TCGA-50-5930-01 7 100361665 100361665 C A ZAN Missense_Mutation p.H1371Q 0.19 unknown(0) TCGA-50-5930-01 7 100364788 100364788 C A ZAN Missense_Mutation p.R1590S 0.10 unknown(0) TCGA-50-5930-01 7 100491150 100491150 G T ACHE Missense_Mutation p.A235E 0.25 deleterious(0) probably_damaging(1) TCGA-50-5930-01 7 100682806 100682806 G A MUC17 Silent p.L2703L 0.13 TCGA-50-5930-01 7 100683269 100683269 G T MUC17 Missense_Mutation p.V2858F 0.18 unknown(0) TCGA-50-5930-01 7 100732402 100732402 G T TRIM56 Silent p.V603V 0.13 TCGA-50-5930-01 7 100807695 100807695 C A VGF Nonsense_Mutation p.E144* 0.27 TCGA-50-5930-01 7 100865895 100865895 G T ZNHIT1 Missense_Mutation p.Q11H 0.27 deleterious(0.05) benign(0.157) TCGA-50-5930-01 7 103018945 103018945 T C SLC26A5 Missense_Mutation p.Y578C 0.07 tolerated(0.16) probably_damaging(0.954) TCGA-50-5930-01 7 103244928 103244928 G T RELN Missense_Mutation p.S1004Y 0.22 deleterious(0) probably_damaging(0.929) TCGA-50-5930-01 7 103338531 103338531 G T RELN Silent p.S304S 0.31 TCGA-50-5930-01 7 106509174 106509174 G T PIK3CG Missense_Mutation p.G390W 0.19 deleterious(0) probably_damaging(1) TCGA-50-5930-01 7 107115200 107115200 C T GPR22 Missense_Mutation p.T232I 0.14 tolerated(0.07) benign(0.05) TCGA-50-5930-01 7 107262377 107262377 G T BCAP29 3'UTR 0.23 TCGA-50-5930-01 7 107591681 107591681 C A LAMB1 Silent p.V1127V 0.21 TCGA-50-5930-01 7 116403323 116403323 G T MET Splice_Site p.X879_splice 0.28 TCGA-50-5930-01 7 116963068 116963068 G T WNT2 5'UTR 0.15 TCGA-50-5930-01 7 119915122 119915122 G T KCND2 Nonsense_Mutation p.E146* 0.19 TCGA-50-5930-01 7 120737849 120737849 G T CPED1 Missense_Mutation p.R238L 0.22 tolerated(0.34) benign(0.011) TCGA-50-5930-01 7 127729676 127729676 G T SND1 Missense_Mutation p.G852W 0.17 deleterious(0) probably_damaging(1) TCGA-50-5930-01 7 135303237 135303237 G C NUP205 Silent p.L1283L 0.21 TCGA-50-5930-01 7 137308241 137308241 C T DGKI Nonsense_Mutation p.W288* 0.19 TCGA-50-5930-01 7 137792239 137792239 T A AKR1D1 Silent p.A256A 0.30 TCGA-50-5930-01 7 138223420 138223420 C T TRIM24 Missense_Mutation p.R339C 0.23 deleterious(0.01) probably_damaging(0.96) TCGA-50-5930-01 7 138522678 138522678 C A KIAA1549 Missense_Mutation p.Q1942H 0.28 deleterious(0) probably_damaging(0.998) TCGA-50-5930-01 7 140434505 140434505 G A BRAF Silent p.P731P 0.20 TCGA-50-5930-01 7 140453149 140453149 C G BRAF Missense_Mutation p.G596R 0.26 deleterious(0.01) possibly_damaging(0.705) TCGA-50-5930-01 7 141673080 141673080 G T TAS2R38 Missense_Mutation p.S137Y 0.17 deleterious(0.01) probably_damaging(0.961) TCGA-50-5930-01 7 141730553 141730553 G T MGAM Missense_Mutation p.G489V 0.10 deleterious(0) probably_damaging(0.982) TCGA-50-5930-01 7 142168614 142168614 G T TRBV5-4 Missense_Mutation p.Q37K 0.20 tolerated(0.21) benign(0.013) TCGA-50-5930-01 7 142499796 142499796 C A TRBC2 Nonsense_Mutation p.Y138* 0.20 TCGA-50-5930-01 7 142627269 142627269 A T TRPV5 Missense_Mutation p.L78Q 0.30 deleterious(0) possibly_damaging(0.908) TCGA-50-5930-01 7 142651328 142651328 C T KEL Silent p.L289L 0.18 TCGA-50-5930-01 7 143048972 143048972 G C CLCN1 Missense_Mutation p.G961R 0.12 tolerated_low_confidence(0.05) possibly_damaging(0.526) TCGA-50-5930-01 7 143141373 143141373 T C TAS2R60 Silent p.F276F 0.24 TCGA-50-5930-01 7 144098994 144098994 G T NOBOX Missense_Mutation p.P87H 0.22 deleterious_low_confidence(0.02) benign(0.017) TCGA-50-5930-01 7 149516601 149516601 C A SSPO RNA 0.27 TCGA-50-5930-01 7 149521633 149521633 C A SSPO RNA 0.18 TCGA-50-5930-01 7 150417495 150417495 G T GIMAP1 Missense_Mutation p.V135L 0.11 tolerated(0.19) benign(0.174) TCGA-50-5930-01 7 151860287 151860288 - T KMT2C Frame_Shift_Ins p.P3459Tfs*3 0.19 TCGA-50-5930-01 7 151878270 151878270 T A KMT2C Silent p.P2225P 0.25 TCGA-50-5930-01 7 152055725 152055725 T A KMT2C Missense_Mutation p.E66V 0.24 possibly_damaging(0.664) TCGA-50-5930-01 7 15601419 15601419 T A AGMO Missense_Mutation p.M18L 0.35 tolerated(0.49) benign(0) TCGA-50-5930-01 7 156752576 156752576 G T NOM1 Missense_Mutation p.R447M 0.20 deleterious(0) probably_damaging(0.984) TCGA-50-5930-01 7 23749870 23749870 G T STK31 5'UTR 0.27 TCGA-50-5930-01 7 27134037 27134037 G C HOXA1 3'UTR 0.32 TCGA-50-5930-01 7 27224830 27224830 T A HOXA11 5'UTR 0.41 TCGA-50-5930-01 7 31792889 31792889 C A PDE1C 3'UTR 0.37 TCGA-50-5930-01 7 31876812 31876812 C T PDE1C Silent p.L455L 0.34 TCGA-50-5930-01 7 4249748 4249748 C T SDK1 Silent p.I1831I 0.38 TCGA-50-5930-01 7 44153237 44153237 C A AEBP1 Missense_Mutation p.R952S 0.29 tolerated(0.05) possibly_damaging(0.866) TCGA-50-5930-01 7 53103418 53103418 G T POM121L12 Silent p.A18A 0.50 TCGA-50-5930-01 7 53103753 53103753 C A POM121L12 Missense_Mutation p.P130Q 0.42 deleterious(0) probably_damaging(0.972) TCGA-50-5930-01 7 56051546 56051546 G T GBAS Missense_Mutation p.R190S 0.36 deleterious(0) probably_damaging(0.969) TCGA-50-5930-01 7 66260522 66260522 G T KCTD7 Nonsense_Mutation p.E180* 0.16 TCGA-50-5930-01 7 72657731 72657731 G T GTF2IRD2P1 RNA 0.23 TCGA-50-5930-01 7 73275531 73275531 G T WBSCR28 Missense_Mutation p.A3S 0.16 tolerated(0.07) benign(0.021) TCGA-50-5930-01 7 7493089 7493089 C A COL28A1 Missense_Mutation p.Q474H 0.34 tolerated(0.24) probably_damaging(0.998) TCGA-50-5930-01 7 801407 801407 C G HEATR2 Silent p.R496R 0.31 TCGA-50-5930-01 7 81695840 81695840 G A CACNA2D1 Missense_Mutation p.A220V 0.33 deleterious(0.01) probably_damaging(0.909) TCGA-50-5930-01 7 83634826 83634826 C T SEMA3A Missense_Mutation p.D397N 0.09 deleterious(0) probably_damaging(0.974) TCGA-50-5930-01 7 84628646 84628646 C - SEMA3D 3'UTR 0.50 TCGA-50-5930-01 7 88964116 88964116 G C ZNF804B Missense_Mutation p.R607T 0.11 deleterious(0.02) benign(0.196) TCGA-50-5930-01 7 89874724 89874724 C A C7orf63 5'UTR 0.15 TCGA-50-5930-01 7 91621525 91621525 G T AKAP9 Missense_Mutation p.R135S 0.19 possibly_damaging(0.571) TCGA-50-5930-01 7 92733607 92733607 A C SAMD9 Missense_Mutation p.S602A 0.28 tolerated(0.23) benign(0.008) TCGA-50-5930-01 7 94049890 94049890 G T COL1A2 Missense_Mutation p.G742V 0.35 unknown(0) TCGA-50-5930-01 7 94185001 94185001 G T CASD1 Missense_Mutation p.L775F 0.13 tolerated(0.11) probably_damaging(0.993) TCGA-50-5930-01 7 97617857 97617857 G A OCM2 Missense_Mutation p.P22L 0.12 tolerated(0.06) probably_damaging(0.97) TCGA-50-5930-01 7 97823412 97823412 G T LMTK2 Missense_Mutation p.G1212V 0.28 tolerated(0.2) benign(0.128) TCGA-50-5930-01 7 98638175 98638175 T C SMURF1 Missense_Mutation p.H485R 0.17 deleterious(0) probably_damaging(1) TCGA-50-5930-01 7 99771575 99771575 C A GPC2 Missense_Mutation p.G259C 0.27 tolerated(0.14) probably_damaging(0.995) TCGA-50-5930-01 7 99795499 99795499 G A STAG3 Silent p.K388K 0.09 TCGA-50-5930-01 8 101014541 101014541 G T RGS22 Nonsense_Mutation p.Y893* 0.21 TCGA-50-5930-01 8 104065030 104065030 G T ATP6V1C1 Missense_Mutation p.Q151H 0.11 deleterious(0.04) probably_damaging(0.969) TCGA-50-5930-01 8 104897842 104897842 T C RIMS2 Silent p.L339L 0.19 TCGA-50-5930-01 8 104940079 104940079 C T RIMS2 Missense_Mutation p.L736F 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.899) TCGA-50-5930-01 8 105010429 105010429 C A RIMS2 Intron 0.18 TCGA-50-5930-01 8 105360835 105360835 G T DCSTAMP Missense_Mutation p.V19L 0.16 tolerated(0.08) benign(0.041) TCGA-50-5930-01 8 106814157 106814157 C T ZFPM2 Missense_Mutation p.P616L 0.12 deleterious(0.05) benign(0.034) TCGA-50-5930-01 8 108913162 108913162 G T RSPO2 3'UTR 0.19 TCGA-50-5930-01 8 109094885 109094885 G T RSPO2 5'UTR 0.26 TCGA-50-5930-01 8 110457809 110457809 C G PKHD1L1 Missense_Mutation p.P1904R 0.19 deleterious(0) possibly_damaging(0.756) TCGA-50-5930-01 8 110631159 110631159 T C SYBU Silent p.R113R 0.14 TCGA-50-5930-01 8 110980774 110980774 A G KCNV1 Missense_Mutation p.L349P 0.16 deleterious(0) probably_damaging(0.999) TCGA-50-5930-01 8 11189587 11189587 A C SLC35G5 Silent p.T324T 0.10 TCGA-50-5930-01 8 116616622 116616622 C A TRPS1 Missense_Mutation p.S525I 0.17 deleterious_low_confidence(0) benign(0.091) TCGA-50-5930-01 8 124663858 124663859 - A KLHL38 Frame_Shift_Ins p.G437Wfs*59 0.11 TCGA-50-5930-01 8 125074093 125074093 G T FER1L6 Nonsense_Mutation p.E1050* 0.20 TCGA-50-5930-01 8 126448750 126448750 C G TRIB1 3'UTR 0.34 TCGA-50-5930-01 8 128428335 128428335 A C POU5F1B Missense_Mutation p.Y75S 0.30 tolerated(0.39) benign(0.24) TCGA-50-5930-01 8 133827105 133827105 A C PHF20L1 Missense_Mutation p.Q385P 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.827) TCGA-50-5930-01 8 134472091 134472091 C A ST3GAL1 Silent p.T313T 0.28 TCGA-50-5930-01 8 139209830 139209830 G C FAM135B Missense_Mutation p.A251G 0.23 deleterious(0) benign(0.067) TCGA-50-5930-01 8 140744431 140744431 C G TRAPPC9 Missense_Mutation p.G1122R 0.24 tolerated(0.21) probably_damaging(0.998) TCGA-50-5930-01 8 143570419 143570419 G T BAI1 Missense_Mutation p.V826L 0.26 deleterious(0.01) benign(0.299) TCGA-50-5930-01 8 143623401 143623401 C T BAI1 Missense_Mutation p.A1269V 0.21 tolerated(0.29) possibly_damaging(0.483) TCGA-50-5930-01 8 143996266 143996266 A C CYP11B2 Silent p.S218S 0.14 TCGA-50-5930-01 8 16942756 16942756 G T MICU3 Missense_Mutation p.G236W 0.23 deleterious(0) probably_damaging(0.997) TCGA-50-5930-01 8 21964955 21964955 C A NUDT18 Silent p.V276V 0.19 TCGA-50-5930-01 8 22136965 22136965 A T PIWIL2 Silent p.V22V 0.23 TCGA-50-5930-01 8 30704668 30704668 G T TEX15 Nonsense_Mutation p.Y622* 0.22 TCGA-50-5930-01 8 33247177 33247177 C A FUT10 Silent p.T172T 0.16 TCGA-50-5930-01 8 42220148 42220148 G T POLB Missense_Mutation p.V214F 0.12 tolerated(0.05) benign(0.028) TCGA-50-5930-01 8 43147699 43147699 G T POTEA RNA 0.13 TCGA-50-5930-01 8 43147797 43147797 C T POTEA RNA 0.12 TCGA-50-5930-01 8 43159860 43159860 T C RNU6-104P 3'Flank 0.26 TCGA-50-5930-01 8 48883356 48883356 G T MCM4 Missense_Mutation p.D574Y 0.17 deleterious(0) probably_damaging(1) TCGA-50-5930-01 8 52321494 52321494 G T PXDNL Missense_Mutation p.S897Y 0.20 deleterious(0) probably_damaging(0.996) TCGA-50-5930-01 8 52387612 52387612 T A PXDNL Missense_Mutation p.Q205L 0.31 deleterious(0.03) benign(0.019) TCGA-50-5930-01 8 54896923 54896923 C T TCEA1 Silent p.E226E 0.21 TCGA-50-5930-01 8 55534092 55534092 A T RP1 Missense_Mutation p.E189V 0.15 tolerated(0.08) benign(0.219) TCGA-50-5930-01 8 6289086 6289086 A T MCPH1 Missense_Mutation p.L100F 0.22 deleterious(0.04) probably_damaging(0.994) TCGA-50-5930-01 8 73480016 73480016 C T KCNB2 Missense_Mutation p.S16L 0.15 deleterious(0.04) benign(0.116) TCGA-50-5930-01 8 75156961 75156961 C A JPH1 Missense_Mutation p.G570C 0.18 deleterious(0.05) possibly_damaging(0.523) TCGA-50-5930-01 8 75756256 75756256 C A PI15 Missense_Mutation p.A105E 0.18 deleterious(0) probably_damaging(0.999) TCGA-50-5930-01 8 77617888 77617888 C A ZFHX4 Missense_Mutation p.T522N 0.22 benign(0.012) TCGA-50-5930-01 8 77764047 77764047 T A ZFHX4 Silent p.G1630G 0.17 TCGA-50-5930-01 8 82359663 82359663 G C PMP2 5'UTR 0.15 TCGA-50-5930-01 8 87076731 87076731 G T PSKH2 Nonsense_Mutation p.C105* 0.15 TCGA-50-5930-01 8 88885973 88885973 C A DCAF4L2 Missense_Mutation p.R76L 0.22 tolerated(1) benign(0) TCGA-50-5930-01 8 90971064 90971064 G A NBN Missense_Mutation p.P338L 0.14 tolerated(0.06) benign(0.015) TCGA-50-5930-01 8 93027010 93027010 C T RUNX1T1 Missense_Mutation p.G100S 0.20 deleterious(0.03) benign(0.299) TCGA-50-5930-01 8 99161154 99161154 G T POP1 Missense_Mutation p.G608C 0.17 deleterious(0) probably_damaging(1) TCGA-50-5930-01 8 99440816 99440816 C A KCNS2 Silent p.T203T 0.24 TCGA-50-5930-01 9 100057211 100057211 C G CCDC180 5'UTR 0.17 TCGA-50-5930-01 9 103213226 103213226 G T MSANTD3 Missense_Mutation p.R269L 0.22 deleterious_low_confidence(0.02) benign(0.033) TCGA-50-5930-01 9 104324547 104324547 G T RNF20 Missense_Mutation p.C924F 0.16 deleterious(0) possibly_damaging(0.89) TCGA-50-5930-01 9 110092004 110092004 G T RAD23B 3'UTR 0.23 TCGA-50-5930-01 9 111617507 111617507 T A ACTL7B Missense_Mutation p.Q235L 0.15 deleterious(0.02) benign(0.129) TCGA-50-5930-01 9 112199251 112199251 C A PTPN3 Splice_Site p.X196_splice 0.17 TCGA-50-5930-01 9 115613163 115613163 G T SNX30 Missense_Mutation p.V347F 0.12 tolerated(0.14) possibly_damaging(0.621) TCGA-50-5930-01 9 117005815 117005815 G T COL27A1 Missense_Mutation p.G970V 0.09 unknown(0) TCGA-50-5930-01 9 117087141 117087141 G T ORM1 Missense_Mutation p.V134L 0.09 tolerated(1) benign(0) TCGA-50-5930-01 9 119770524 119770524 C A ASTN2 Missense_Mutation p.V429L 0.18 tolerated(1) unknown(0) TCGA-50-5930-01 9 120476921 120476921 A T TLR4 Missense_Mutation p.I839F 0.22 deleterious_low_confidence(0.04) benign(0.026) TCGA-50-5930-01 9 123220813 123220813 C A CDK5RAP2 Missense_Mutation p.A764S 0.20 tolerated(0.74) benign(0.007) TCGA-50-5930-01 9 124979411 124979411 C T LHX6 Silent p.E206E 0.24 TCGA-50-5930-01 9 125330369 125330369 G T OR1L8 Missense_Mutation p.P130T 0.14 deleterious(0) probably_damaging(1) TCGA-50-5930-01 9 127619792 127619792 T A WDR38 Missense_Mutation p.D276E 0.21 tolerated(0.18) benign(0.083) TCGA-50-5930-01 9 130536320 130536320 G A SH2D3C Missense_Mutation p.P155L 0.19 tolerated(0.64) benign(0.001) TCGA-50-5930-01 9 132637912 132637912 G T USP20 Silent p.L764L 0.14 TCGA-50-5930-01 9 137778410 137778410 G T FCN2 Nonsense_Mutation p.G232* 0.11 TCGA-50-5930-01 9 137809761 137809761 G C FCN1 5'UTR 0.14 TCGA-50-5930-01 9 138378997 138378997 G C PPP1R26 Missense_Mutation p.E881Q 0.17 tolerated(0.23) possibly_damaging(0.859) TCGA-50-5930-01 9 138379037 138379037 G T PPP1R26 Missense_Mutation p.R894M 0.11 deleterious(0) probably_damaging(0.919) TCGA-50-5930-01 9 138379038 138379038 G C PPP1R26 Missense_Mutation p.R894S 0.09 deleterious(0) possibly_damaging(0.765) TCGA-50-5930-01 9 138379122 138379122 G T PPP1R26 Missense_Mutation p.Q922H 0.13 tolerated(0.17) possibly_damaging(0.891) TCGA-50-5930-01 9 138586226 138586226 C A SOHLH1 Intron 0.09 TCGA-50-5930-01 9 139358874 139358874 C A SEC16A Nonsense_Mutation p.E1482* 0.20 TCGA-50-5930-01 9 139405257 139405257 C A NOTCH1 Missense_Mutation p.G863V 0.21 deleterious(0) probably_damaging(1) TCGA-50-5930-01 9 15444672 15444672 G A SNAPC3 Missense_Mutation p.V184M 0.14 deleterious(0.01) benign(0.318) TCGA-50-5930-01 9 21201786 21201786 C A IFNA7 Missense_Mutation p.V127F 0.24 deleterious(0.01) possibly_damaging(0.564) TCGA-50-5930-01 9 21441135 21441135 G T IFNA1 3'UTR 0.25 TCGA-50-5930-01 9 35689751 35689751 C T TPM2 Missense_Mutation p.A22T 0.27 deleterious(0) possibly_damaging(0.555) TCGA-50-5930-01 9 43626161 43626161 G A SPATA31A6 Silent p.T842T 0.36 TCGA-50-5930-01 9 43630541 43630541 G A SPATA31A6 Missense_Mutation p.P54L 0.24 tolerated(0.07) benign(0.015) TCGA-50-5930-01 9 6013036 6013036 A G RANBP6 Missense_Mutation p.F858L 0.29 tolerated(0.08) benign(0.225) TCGA-50-5930-01 9 73150950 73150950 C T TRPM3 Silent p.P1681P 0.14 TCGA-50-5930-01 9 78848435 78848435 A T PCSK5 Missense_Mutation p.N930I 0.26 deleterious(0.03) benign(0.332) TCGA-50-5930-01 9 79320697 79320697 C T PRUNE2 Missense_Mutation p.A2165T 0.14 tolerated(0.49) benign(0.007) TCGA-50-5930-01 9 79322395 79322395 C A PRUNE2 Missense_Mutation p.V1599L 0.12 tolerated(0.22) benign(0.006) TCGA-50-5930-01 9 79461440 79461440 G A PRUNE2 Missense_Mutation p.R167C 0.18 deleterious(0) benign(0.439) TCGA-50-5930-01 9 79634727 79634727 C A FOXB2 Missense_Mutation p.H53N 0.21 tolerated(1) unknown(0) TCGA-50-5930-01 9 79959117 79959117 G T VPS13A Missense_Mutation p.V2359F 0.21 deleterious(0) probably_damaging(0.995) TCGA-50-5930-01 9 80046288 80046288 G T GNA14 Missense_Mutation p.P181H 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-50-5930-01 9 85950531 85950531 C A FRMD3 Missense_Mutation p.D166Y 0.15 deleterious(0.03) possibly_damaging(0.802) TCGA-50-5930-01 9 86504076 86504076 T A KIF27 Missense_Mutation p.Q634H 0.20 deleterious(0.05) probably_damaging(0.971) TCGA-50-5930-01 9 88842843 88842843 G T C9orf153 Missense_Mutation p.L57I 0.15 deleterious(0.01) possibly_damaging(0.801) TCGA-50-5930-01 9 90500130 90500130 C A SPATA31E1 Missense_Mutation p.P243H 0.19 deleterious(0) probably_damaging(0.987) TCGA-50-5930-01 9 90501038 90501038 G A SPATA31E1 Missense_Mutation p.G546R 0.14 tolerated(0.39) benign(0.028) TCGA-50-5930-01 9 91083324 91083324 A T SPIN1 Silent p.T131T 0.17 TCGA-50-5930-01 9 93637033 93637033 G T SYK Missense_Mutation p.K361N 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-50-5930-01 9 94493296 94493296 C A ROR2 Missense_Mutation p.G360V 0.20 deleterious(0) probably_damaging(0.994) TCGA-50-5930-01 9 94493297 94493297 C T ROR2 Missense_Mutation p.G360R 0.20 deleterious(0) probably_damaging(0.996) TCGA-50-5930-01 9 99694599 99694599 G T NUTM2G Missense_Mutation p.K204N 0.14 tolerated(0.07) probably_damaging(0.917) TCGA-50-5930-01 X 102339804 102339804 A T NXF3 Silent p.T12T 0.31 TCGA-50-5930-01 X 102586698 102586698 G A TCEAL7 3'UTR 0.43 TCGA-50-5930-01 X 102979521 102979521 A T GLRA4 Missense_Mutation p.V73E 0.35 deleterious(0) probably_damaging(0.99) TCGA-50-5930-01 X 105868404 105868404 C A CXorf57 Silent p.R291R 0.38 TCGA-50-5930-01 X 109922564 109922564 T A CHRDL1 Missense_Mutation p.S416C 0.47 deleterious(0.03) possibly_damaging(0.653) TCGA-50-5930-01 X 110653991 110653991 C A DCX Missense_Mutation p.S71I 0.36 deleterious_low_confidence(0) benign(0.113) TCGA-50-5930-01 X 115303948 115303948 A G AGTR2 Missense_Mutation p.S139G 0.39 deleterious(0.02) probably_damaging(0.981) TCGA-50-5930-01 X 118221961 118221961 C T KIAA1210 Missense_Mutation p.A1078T 0.45 tolerated(0.33) benign(0.069) TCGA-50-5930-01 X 127185043 127185043 G T ACTRT1 3'UTR 0.33 TCGA-50-5930-01 X 129354380 129354380 C A ZNF280C Silent p.A490A 0.27 TCGA-50-5930-01 X 130410115 130410115 G T IGSF1 Missense_Mutation p.L911I 0.33 deleterious(0) probably_damaging(0.999) TCGA-50-5930-01 X 132159638 132159638 G T USP26 Missense_Mutation p.Q871K 0.35 tolerated(0.17) possibly_damaging(0.759) TCGA-50-5930-01 X 135426738 135426738 T C GPR112 Silent p.S291S 0.38 TCGA-50-5930-01 X 1413327 1413327 T C CSF2RA Silent p.F251F 0.20 TCGA-50-5930-01 X 142718818 142718818 T A SLITRK4 Missense_Mutation p.E36V 0.36 deleterious(0) probably_damaging(0.981) TCGA-50-5930-01 X 148038016 148038016 C A AFF2 Missense_Mutation p.P814H 0.31 deleterious(0) probably_damaging(1) TCGA-50-5930-01 X 14910924 14910924 G T MOSPD2 Missense_Mutation p.W53C 0.35 deleterious(0.03) probably_damaging(0.973) TCGA-50-5930-01 X 150891233 150891233 C G FATE1 3'UTR 0.41 TCGA-50-5930-01 X 151336632 151336632 C A GABRA3 3'UTR 0.41 TCGA-50-5930-01 X 151900479 151900479 C G MAGEA12 Missense_Mutation p.A108P 0.39 tolerated(0.14) benign(0.028) TCGA-50-5930-01 X 152814989 152814989 T A ATP2B3 Missense_Mutation p.L458Q 0.38 deleterious(0) probably_damaging(0.938) TCGA-50-5930-01 X 153880397 153880397 C T CTAG2 3'UTR 0.31 TCGA-50-5930-01 X 153940880 153940880 G A GAB3 Silent p.P231P 0.34 TCGA-50-5930-01 X 154020488 154020488 C A MPP1 Missense_Mutation p.A59S 0.41 tolerated(0.36) benign(0.001) TCGA-50-5930-01 X 15619049 15619049 C A ACE2 5'UTR 0.43 TCGA-50-5930-01 X 18276194 18276194 G C SCML2 Missense_Mutation p.P415A 0.31 tolerated(0.11) benign(0.072) TCGA-50-5930-01 X 19555896 19555896 C G SH3KBP1 Missense_Mutation p.R632P 0.40 deleterious(0.01) probably_damaging(0.915) TCGA-50-5930-01 X 19968954 19968954 T A CXorf23 Silent p.L554L 0.28 TCGA-50-5930-01 X 22292142 22292142 C A ZNF645 Missense_Mutation p.S345Y 0.40 deleterious(0.02) possibly_damaging(0.635) TCGA-50-5930-01 X 38019325 38019325 A C SRPX Silent p.P300P 0.29 TCGA-50-5930-01 X 41082625 41082625 G T USP9X Missense_Mutation p.V2241F 0.38 deleterious(0) probably_damaging(0.979) TCGA-50-5930-01 X 46541867 46541867 T C SLC9A7 Silent p.L143L 0.48 TCGA-50-5930-01 X 48047094 48047094 G A SSX5 Silent p.I221I 0.39 TCGA-50-5930-01 X 53591627 53591627 C A HUWE1 Missense_Mutation p.V2313L 0.16 benign(0.275) TCGA-50-5930-01 X 54337652 54337652 G T WNK3 Missense_Mutation p.P204T 0.27 deleterious(0) probably_damaging(1) TCGA-50-5930-01 X 5811509 5811509 C A NLGN4X Missense_Mutation p.L600F 0.36 deleterious(0.01) benign(0.348) TCGA-50-5930-01 X 5947446 5947446 G T NLGN4X Missense_Mutation p.P167H 0.42 deleterious(0) probably_damaging(0.999) TCGA-50-5930-01 X 69283009 69283009 G T OTUD6A Missense_Mutation p.R212L 0.40 tolerated(0.73) benign(0.023) TCGA-50-5930-01 X 73066692 73066692 G T XIST RNA 0.28 TCGA-50-5930-01 X 73963750 73963750 T A KIAA2022 Silent p.A214A 0.44 TCGA-50-5930-01 X 77528650 77528650 A T CYSLTR1 Missense_Mutation p.F198L 0.45 deleterious(0.01) probably_damaging(0.974) TCGA-50-5930-01 X 77528734 77528734 A G CYSLTR1 Silent p.N170N 0.30 TCGA-50-5930-01 X 83723645 83723645 G T HDX Missense_Mutation p.D362E 0.31 tolerated(0.43) benign(0.123) TCGA-50-5930-01 X 90690941 90690941 T C PABPC5 Missense_Mutation p.L122P 0.32 deleterious(0) probably_damaging(1) TCGA-50-5930-01 X 90691002 90691002 C A PABPC5 Missense_Mutation p.N142K 0.42 tolerated(0.12) benign(0.068) TCGA-50-5930-01 X 90691474 90691474 C A PABPC5 Missense_Mutation p.P300T 0.41 deleterious(0.01) benign(0.01) TCGA-50-5931-01 10 120070333 120070333 T A FAM204A 3'UTR 0.05 TCGA-50-5931-01 10 124358481 124358481 C A DMBT1 Missense_Mutation p.Q1050K 0.89 tolerated(0.23) unknown(0) TCGA-50-5931-01 10 126715738 126715738 C T CTBP2 Silent p.R197R 0.42 TCGA-50-5931-01 10 127755307 127755307 C A ADAM12 Silent p.G467G 0.31 TCGA-50-5931-01 10 133758916 133758916 G A PPP2R2D Missense_Mutation p.R227H 0.21 deleterious(0) probably_damaging(0.981) TCGA-50-5931-01 10 17271973 17271973 C T VIM Silent p.R184R 0.70 TCGA-50-5931-01 10 23290868 23290868 G T ARMC3 Missense_Mutation p.L482F 0.75 deleterious(0) possibly_damaging(0.558) TCGA-50-5931-01 10 26789819 26789819 G T APBB1IP Missense_Mutation p.A78S 0.46 deleterious(0.02) possibly_damaging(0.785) TCGA-50-5931-01 10 84498383 84498383 C G NRG3 Missense_Mutation p.T335S 0.85 tolerated(0.18) possibly_damaging(0.826) TCGA-50-5931-01 10 86131530 86131530 C A CCSER2 Nonsense_Mutation p.S241* 0.20 TCGA-50-5931-01 10 88221029 88221029 T A WAPAL Missense_Mutation p.M796L 0.92 tolerated(0.11) probably_damaging(0.924) TCGA-50-5931-01 11 100061936 100061936 G A CNTN5 Silent p.G553G 0.27 TCGA-50-5931-01 11 10327535 10327535 G T ADM Silent p.L46L 0.58 TCGA-50-5931-01 11 10327536 10327536 C A ADM Silent p.R47R 0.58 TCGA-50-5931-01 11 113644417 113644417 G C ZW10 5'UTR 0.47 TCGA-50-5931-01 11 12263846 12263846 G A MICAL2 Missense_Mutation p.R808K 0.37 tolerated_low_confidence(0.28) benign(0.009) TCGA-50-5931-01 11 12518121 12518121 A G PARVA Missense_Mutation p.R213G 0.36 tolerated(0.39) benign(0.138) TCGA-50-5931-01 11 132081940 132081940 C T NTM Missense_Mutation p.S142F 0.42 deleterious(0) probably_damaging(0.967) TCGA-50-5931-01 11 18731191 18731191 G C IGSF22 Missense_Mutation p.S914C 0.36 deleterious(0.04) probably_damaging(1) TCGA-50-5931-01 11 47603679 47603679 A G NDUFS3 Missense_Mutation p.I141V 0.06 tolerated(0.11) benign(0.252) TCGA-50-5931-01 11 4790455 4790455 G A OR51F1 Silent p.A231A 0.46 TCGA-50-5931-01 11 4904111 4904111 T A OR51T1 Nonstop_Mutation p.*355Rext*? 0.32 TCGA-50-5931-01 11 49204782 49204782 C A FOLH1 Missense_Mutation p.R280M 0.25 deleterious(0) possibly_damaging(0.763) TCGA-50-5931-01 11 55038377 55038377 C A TRIM48 3'UTR 0.36 TCGA-50-5931-01 11 55038378 55038378 C T TRIM48 3'UTR 0.34 TCGA-50-5931-01 11 55798274 55798274 G A OR5AS1 Missense_Mutation p.C127Y 0.23 tolerated(0.08) probably_damaging(0.935) TCGA-50-5931-01 11 55904560 55904560 A T OR8J3 Missense_Mutation p.I212N 0.53 deleterious(0.01) benign(0.281) TCGA-50-5931-01 11 63743756 63743764 CCTGTCACA - COX8A In_Frame_Del p.S60_L62del 0.53 TCGA-50-5931-01 11 66191875 66191875 C T NPAS4 Missense_Mutation p.T505I 0.53 deleterious_low_confidence(0.01) benign(0.05) TCGA-50-5931-01 11 66455339 66455339 C A SPTBN2 Silent p.P2167P 0.45 TCGA-50-5931-01 11 67203241 67203241 G T PTPRCAP Missense_Mutation p.A195E 0.48 deleterious(0.01) probably_damaging(0.932) TCGA-50-5931-01 11 67222849 67222849 G A CABP4 5'UTR 0.12 TCGA-50-5931-01 11 6942637 6942637 C A OR2D3 Silent p.S135S 0.26 TCGA-50-5931-01 11 6977310 6977310 C T ZNF215 Nonsense_Mutation p.R368* 0.45 TCGA-50-5931-01 11 7024067 7024067 C A ZNF214 5'UTR 0.27 TCGA-50-5931-01 11 88780709 88780709 T A GRM5 Missense_Mutation p.E111V 0.24 deleterious(0) probably_damaging(0.999) TCGA-50-5931-01 11 92088374 92088374 G T FAT3 Silent p.V1032V 0.59 TCGA-50-5931-01 11 93837701 93837701 A G HEPHL1 Missense_Mutation p.Y897C 0.67 deleterious(0.02) probably_damaging(0.989) TCGA-50-5931-01 12 102038549 102038549 G T MYBPC1 Missense_Mutation p.G289C 0.41 deleterious(0) probably_damaging(1) TCGA-50-5931-01 12 117013722 117013722 G T MAP1LC3B2 5'UTR 0.38 TCGA-50-5931-01 12 13717085 13717085 G A GRIN2B Silent p.S1029S 0.21 TCGA-50-5931-01 12 40441975 40441975 C A SLC2A13 Missense_Mutation p.E198D 0.41 deleterious(0) probably_damaging(1) TCGA-50-5931-01 12 46230616 46230616 A G ARID2 Missense_Mutation p.I289V 0.12 tolerated(0.51) benign(0.002) TCGA-50-5931-01 12 4737626 4737626 C T AKAP3 Missense_Mutation p.D148N 0.06 deleterious(0.03) benign(0.04) TCGA-50-5931-01 12 49445464 49445464 C A KMT2D Nonsense_Mutation p.E668* 0.42 TCGA-50-5931-01 12 49445465 49445465 C A KMT2D Missense_Mutation p.E667D 0.41 unknown(0) TCGA-50-5931-01 12 51773084 51773084 C A GALNT6 Missense_Mutation p.R161L 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-50-5931-01 12 53044148 53044148 C A KRT2 Missense_Mutation p.D259Y 0.39 deleterious(0.01) probably_damaging(1) TCGA-50-5931-01 12 53722249 53722249 C G SP7 Missense_Mutation p.C326S 0.36 deleterious(0) probably_damaging(0.999) TCGA-50-5931-01 12 57422590 57422590 C A MYO1A Missense_Mutation p.K1027N 0.51 tolerated(0.49) benign(0.005) TCGA-50-5931-01 12 57960909 57960909 G T KIF5A Missense_Mutation p.G168C 0.40 deleterious(0.02) probably_damaging(1) TCGA-50-5931-01 12 57989697 57989697 C T PIP4K2C Silent p.S132S 0.09 TCGA-50-5931-01 12 57994654 57994654 C T PIP4K2C Missense_Mutation p.R292W 0.11 deleterious(0) probably_damaging(0.988) TCGA-50-5931-01 12 66638982 66638982 C T IRAK3 Silent p.L418L 0.48 TCGA-50-5931-01 12 72936110 72936110 C A TRHDE Missense_Mutation p.H543N 0.23 deleterious(0) benign(0.016) TCGA-50-5931-01 12 81751934 81751934 G A PPFIA2 Missense_Mutation p.S567F 0.40 tolerated(0.05) benign(0.003) TCGA-50-5931-01 12 85449837 85449837 A T LRRIQ1 Silent p.I422I 0.38 TCGA-50-5931-01 12 99019842 99019842 T C IKBIP Missense_Mutation p.I334V 0.43 tolerated(0.09) benign(0.297) TCGA-50-5931-01 13 23915110 23915110 T A SACS Missense_Mutation p.S969C 0.71 possibly_damaging(0.514) TCGA-50-5931-01 13 31495960 31495960 G T MEDAG Missense_Mutation p.R255L 0.83 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-50-5931-01 13 36167465 36167465 G A NBEA Missense_Mutation p.E2393K 0.87 deleterious(0.01) probably_damaging(0.998) TCGA-50-5931-01 14 106478163 106478163 G T IGHV4-4 Missense_Mutation p.L99M 0.06 deleterious_low_confidence(0.03) probably_damaging(0.994) TCGA-50-5931-01 14 106478164 106478164 G T IGHV4-4 Silent p.S98S 0.06 TCGA-50-5931-01 14 19553741 19553741 T A POTEG Missense_Mutation p.C109S 0.14 deleterious(0.01) benign(0.014) TCGA-50-5931-01 14 22989437 22989437 G - TRAJ23 Frame_Shift_Del p.E16Sfs*4 0.43 TCGA-50-5931-01 14 38679067 38679067 C T SSTR1 Missense_Mutation p.A158V 0.79 deleterious(0) possibly_damaging(0.554) TCGA-50-5931-01 14 65289696 65289696 G T SPTB Silent p.L39L 0.83 TCGA-50-5931-01 14 74061971 74061971 G C ACOT4 Silent p.V293V 0.81 TCGA-50-5931-01 14 74876055 74876055 C T SYNDIG1L Silent p.Q131Q 0.86 TCGA-50-5931-01 15 22472973 22472973 G T IGHV4OR15-8 Missense_Mutation p.L100M 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-50-5931-01 15 22472974 22472974 G T IGHV4OR15-8 Silent p.S99S 0.14 TCGA-50-5931-01 15 24921226 24921226 C A NPAP1 Missense_Mutation p.P71Q 0.35 tolerated(0.43) probably_damaging(0.946) TCGA-50-5931-01 15 27159949 27159949 G T GABRA5 Splice_Site p.X166_splice 0.44 TCGA-50-5931-01 15 33835899 33835899 G T RYR3 Missense_Mutation p.Q241H 0.34 benign(0.006) TCGA-50-5931-01 15 34130188 34130188 G A RYR3 Missense_Mutation p.E4003K 0.46 probably_damaging(0.999) TCGA-50-5931-01 15 42005461 42005461 G T MGA Missense_Mutation p.R1066L 0.47 deleterious(0) probably_damaging(0.993) TCGA-50-5931-01 15 43552773 43552773 T C TGM5 Silent p.L5L 0.59 TCGA-50-5931-01 15 49030413 49030413 T C CEP152 3'UTR 0.40 TCGA-50-5931-01 15 50154564 50154564 G T ATP8B4 Silent p.R1059R 0.50 TCGA-50-5931-01 15 50158550 50158550 T A ATP8B4 Silent p.P1053P 0.30 TCGA-50-5931-01 15 76496245 76496245 C T C15orf27 Silent p.T395T 0.57 TCGA-50-5931-01 15 85325992 85325992 C T ZNF592 Missense_Mutation p.A29V 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-50-5931-01 16 20451223 20451223 A G ACSM5 Silent p.P546P 0.34 TCGA-50-5931-01 16 31372509 31372509 G A ITGAX Silent p.L329L 0.39 TCGA-50-5931-01 16 3533373 3533373 A T NAA60 Missense_Mutation p.L116F 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-50-5931-01 16 48117616 48117616 G T ABCC12 3'UTR 0.52 TCGA-50-5931-01 16 55867045 55867045 C A CES1 5'UTR 0.40 TCGA-50-5931-01 16 61689397 61689397 A T CDH8 Nonsense_Mutation p.L628* 0.38 TCGA-50-5931-01 16 67864378 67864378 G A CENPT Silent p.P259P 0.27 TCGA-50-5931-01 16 716315 716315 G T WDR90 Missense_Mutation p.A1569S 0.47 tolerated(0.48) probably_damaging(0.995) TCGA-50-5931-01 16 84182725 84182725 G A DNAAF1 Missense_Mutation p.D80N 0.30 deleterious(0.03) benign(0.413) TCGA-50-5931-01 16 89613071 89613071 G T SPG7 Missense_Mutation p.R485S 0.06 deleterious(0) probably_damaging(0.999) TCGA-50-5931-01 16 9857220 9857220 T A GRIN2A Missense_Mutation p.Q1394L 0.40 deleterious(0.05) benign(0.167) TCGA-50-5931-01 17 10348183 10348183 G T MYH4 Missense_Mutation p.Q1834K 0.81 deleterious(0.04) probably_damaging(0.998) TCGA-50-5931-01 17 10443380 10443380 C T MYH2 Missense_Mutation p.A338T 0.75 deleterious(0) probably_damaging(0.969) TCGA-50-5931-01 17 27015143 27015143 G - SUPT6H Frame_Shift_Del p.T1015Pfs*15 0.36 TCGA-50-5931-01 17 46700481 46700481 G C HOXB9 Missense_Mutation p.N178K 0.46 deleterious(0) benign(0.19) TCGA-50-5931-01 17 49073994 49073994 C T SPAG9 Missense_Mutation p.A634T 0.24 deleterious(0.05) benign(0.314) TCGA-50-5931-01 17 56693591 56693591 C A TEX14 Missense_Mutation p.A244S 0.41 deleterious(0) probably_damaging(0.998) TCGA-50-5931-01 17 61996176 61996176 G A GH1 5'UTR 0.39 TCGA-50-5931-01 17 6610448 6610448 G A SLC13A5 Missense_Mutation p.L44F 0.18 deleterious(0) possibly_damaging(0.865) TCGA-50-5931-01 17 72584765 72584765 G A CD300LD Silent p.H88H 0.43 TCGA-50-5931-01 17 72846704 72846704 T A GRIN2C Missense_Mutation p.H439L 0.43 tolerated(0.3) benign(0.002) TCGA-50-5931-01 17 7579414 7579414 C T TP53 Nonsense_Mutation p.W91* 0.76 TCGA-50-5931-01 17 77078118 77078118 G T ENGASE Silent p.V337V 0.47 TCGA-50-5931-01 17 79866977 79866977 C A PCYT2 Intron 0.37 TCGA-50-5931-01 18 40850395 40850395 C A SYT4 Missense_Mutation p.A397S 0.42 tolerated(1) benign(0.038) TCGA-50-5931-01 18 70417732 70417732 C T NETO1 Missense_Mutation p.R369H 0.36 deleterious(0) probably_damaging(0.997) TCGA-50-5931-01 18 72913607 72913607 C T ZADH2 Missense_Mutation p.V300I 0.42 tolerated(0.35) benign(0.004) TCGA-50-5931-01 19 10655478 10655478 G T ATG4D Silent p.R85R 0.70 TCGA-50-5931-01 19 15367954 15367954 G T BRD4 Missense_Mutation p.P458T 0.88 possibly_damaging(0.641) TCGA-50-5931-01 19 16664607 16664607 G A SLC35E1 Silent p.L372L 0.70 TCGA-50-5931-01 19 18778558 18778558 C G KLHL26 Missense_Mutation p.I117M 0.51 deleterious(0) possibly_damaging(0.819) TCGA-50-5931-01 19 22379529 22379529 C A ZNF676 5'UTR 0.44 TCGA-50-5931-01 19 22942366 22942366 T A ZNF99 Missense_Mutation p.K115N 0.36 tolerated(0.13) benign(0.315) TCGA-50-5931-01 19 31039889 31039889 G T ZNF536 Missense_Mutation p.M1121I 0.39 tolerated_low_confidence(0.43) benign(0) TCGA-50-5931-01 19 33439179 33439179 T C CEP89 Silent p.Q196Q 0.54 TCGA-50-5931-01 19 36350399 36350399 G T KIRREL2 Missense_Mutation p.G180V 0.41 deleterious(0) benign(0.263) TCGA-50-5931-01 19 3779791 3779791 G T MATK Silent p.V250V 0.78 TCGA-50-5931-01 19 38905688 38905688 C G RASGRP4 Missense_Mutation p.A344P 0.55 deleterious(0.05) benign(0.271) TCGA-50-5931-01 19 40430472 40430472 T G FCGBP Missense_Mutation p.M491L 0.40 possibly_damaging(0.723) TCGA-50-5931-01 19 41932338 41932338 G T B3GNT8 Missense_Mutation p.R116S 0.39 deleterious(0.01) benign(0.233) TCGA-50-5931-01 19 45805710 45805710 G T MARK4 Silent p.S667S 0.48 TCGA-50-5931-01 19 4896732 4896732 T C ARRDC5 Missense_Mutation p.Y151C 0.80 tolerated(0.25) benign(0.059) TCGA-50-5931-01 19 49439303 49439303 G A DHDH Missense_Mutation p.G73S 0.21 deleterious(0) probably_damaging(0.929) TCGA-50-5931-01 19 52115520 52115520 G T SIGLEC5 Missense_Mutation p.S540R 0.47 tolerated(0.06) benign(0.025) TCGA-50-5931-01 19 55424268 55424268 G T NCR1 3'UTR 0.33 TCGA-50-5931-01 19 56320320 56320320 A G NLRP11 Silent p.N552N 0.44 TCGA-50-5931-01 19 57640629 57640629 A G USP29 Missense_Mutation p.K196E 0.38 tolerated(0.08) benign(0.242) TCGA-50-5931-01 19 57988721 57988722 - G ZNF772 5'UTR 0.28 TCGA-50-5931-01 19 58438312 58438312 G A ZNF418 Missense_Mutation p.L413F 0.27 tolerated(0.07) probably_damaging(0.98) TCGA-50-5931-01 19 9049765 9049765 T C MUC16 Silent p.L10622L 0.77 TCGA-50-5931-01 19 9063480 9063480 G C MUC16 Missense_Mutation p.T7989R 0.73 unknown(0) TCGA-50-5931-01 19 9091090 9091090 G T MUC16 Missense_Mutation p.P242H 0.86 unknown(0) TCGA-50-5931-01 1 103548481 103548481 C G COL11A1 Missense_Mutation p.E52Q 0.44 probably_damaging(0.96) TCGA-50-5931-01 1 117122485 117122485 C A IGSF3 Missense_Mutation p.V975L 0.39 tolerated(0.2) benign(0.09) TCGA-50-5931-01 1 119575683 119575683 C A WARS2 Nonsense_Mutation p.E312* 0.41 TCGA-50-5931-01 1 1249403 1249403 G A CPSF3L Intron 0.21 TCGA-50-5931-01 1 147092256 147092256 G C BCL9 Silent p.V765V 0.47 TCGA-50-5931-01 1 149898282 149898282 C A SF3B4 Missense_Mutation p.G231V 0.64 tolerated(0.17) unknown(0) TCGA-50-5931-01 1 153660565 153660565 C A NPR1 Missense_Mutation p.P762H 0.34 tolerated(0.53) possibly_damaging(0.77) TCGA-50-5931-01 1 155451984 155451984 G A ASH1L Missense_Mutation p.T226I 0.30 deleterious_low_confidence(0.03) benign(0.059) TCGA-50-5931-01 1 155717352 155717352 A C GON4L 3'Flank 0.16 TCGA-50-5931-01 1 157667638 157667638 C G FCRL3 Missense_Mutation p.D124H 0.62 tolerated(0.08) possibly_damaging(0.726) TCGA-50-5931-01 1 158390049 158390049 C A OR10K2 Missense_Mutation p.C203F 0.33 deleterious(0.01) possibly_damaging(0.866) TCGA-50-5931-01 1 158670076 158670076 G T OR6K2 Missense_Mutation p.L123M 0.34 deleterious(0) benign(0.126) TCGA-50-5931-01 1 160651121 160651121 C A CD48 Nonsense_Mutation p.E175* 0.32 TCGA-50-5931-01 1 161132420 161132420 T C USP21 Missense_Mutation p.I266T 0.66 tolerated(0.05) benign(0.224) TCGA-50-5931-01 1 173478744 173478744 G C SLC9C2 Missense_Mutation p.T1001S 0.42 deleterious(0) benign(0.345) TCGA-50-5931-01 1 197403914 197403914 C G CRB1 Missense_Mutation p.T974S 0.63 deleterious(0.01) probably_damaging(0.95) TCGA-50-5931-01 1 216219863 216219863 T C USH2A Missense_Mutation p.K2079E 0.72 benign(0.006) TCGA-50-5931-01 1 220100417 220100417 T C SLC30A10 Missense_Mutation p.E224G 0.60 deleterious(0.02) benign(0.071) TCGA-50-5931-01 1 222923317 222923317 C A FAM177B Missense_Mutation p.P132T 0.56 tolerated(0.05) benign(0.382) TCGA-50-5931-01 1 237538083 237538083 G T RYR2 Nonsense_Mutation p.E151* 0.80 TCGA-50-5931-01 1 237580397 237580397 T A RYR2 Silent p.L274L 0.57 TCGA-50-5931-01 1 237947531 237947531 A G RYR2 Missense_Mutation p.I4173M 0.29 probably_damaging(0.985) TCGA-50-5931-01 1 243542029 243542029 G C SDCCAG8 Missense_Mutation p.E494Q 0.31 tolerated(0.09) probably_damaging(0.991) TCGA-50-5931-01 1 243579123 243579123 A G SDCCAG8 Missense_Mutation p.D579G 0.50 deleterious(0.01) possibly_damaging(0.897) TCGA-50-5931-01 1 248201826 248201826 A G OR2L2 Missense_Mutation p.Y86C 0.28 tolerated(0.18) benign(0) TCGA-50-5931-01 1 248343519 248343519 G A OR2M2 Missense_Mutation p.V78I 0.06 tolerated(0.07) benign(0.081) TCGA-50-5931-01 1 248512680 248512680 C A OR14C36 Missense_Mutation p.L202M 0.58 tolerated(0.16) benign(0.196) TCGA-50-5931-01 1 248616203 248616203 C A OR2T2 Silent p.I35I 0.10 TCGA-50-5931-01 1 26527428 26527428 C T CATSPER4 Silent p.P365P 0.39 TCGA-50-5931-01 1 27278144 27278144 A G C1orf172 Missense_Mutation p.I243T 0.58 deleterious(0) probably_damaging(0.997) TCGA-50-5931-01 1 34276420 34276420 G C CSMD2 Missense_Mutation p.T417S 0.41 tolerated(0.08) probably_damaging(0.999) TCGA-50-5931-01 1 35652649 35652649 C A SFPQ Missense_Mutation p.G647C 0.36 deleterious(0) probably_damaging(0.979) TCGA-50-5931-01 1 45965897 45965897 T C MMACHC 5'UTR 0.35 TCGA-50-5931-01 1 53074127 53074127 C A GPX7 3'UTR 0.43 TCGA-50-5931-01 1 53544461 53544461 C T PODN Missense_Mutation p.R475C 0.57 deleterious(0.04) probably_damaging(0.998) TCGA-50-5931-01 1 53995556 53995556 C G GLIS1 Missense_Mutation p.E289Q 0.45 deleterious(0) probably_damaging(0.992) TCGA-50-5931-01 1 66038102 66038102 A T LEPR Missense_Mutation p.Y155F 0.42 tolerated(0.67) benign(0.01) TCGA-50-5931-01 1 66713219 66713219 C A PDE4B Missense_Mutation p.L120I 0.49 tolerated(0.06) possibly_damaging(0.816) TCGA-50-5931-01 1 68905310 68905310 A G RPE65 Missense_Mutation p.I220T 0.39 deleterious(0) benign(0.181) TCGA-50-5931-01 1 75055313 75055313 A - C1orf173 Splice_Site p.X726_splice 0.32 TCGA-50-5931-01 1 7725216 7725216 T A CAMTA1 Missense_Mutation p.V870E 0.40 deleterious(0) possibly_damaging(0.451) TCGA-50-5931-01 1 79002383 79002383 C A PTGFR 3'UTR 0.45 TCGA-50-5931-01 1 85786976 85786976 G C DDAH1 3'UTR 0.40 TCGA-50-5931-01 1 87040257 87040257 C A CLCA4 Missense_Mutation p.A501D 0.31 tolerated(0.55) benign(0.005) TCGA-50-5931-01 1 93602318 93602327 AGAGCACTCC - MTF2 Frame_Shift_Del p.A507Lfs*7 0.09 TCGA-50-5931-01 20 20018200 20018200 C A CRNKL1 Missense_Mutation p.A716S 0.35 deleterious(0.02) possibly_damaging(0.685) TCGA-50-5931-01 20 47256395 47256395 C A PREX1 Silent p.R1271R 0.52 TCGA-50-5931-01 20 47989929 47989929 G T KCNB1 Missense_Mutation p.S723Y 0.49 tolerated_low_confidence(0.11) benign(0.332) TCGA-50-5931-01 20 51871355 51871355 G T TSHZ2 Missense_Mutation p.C453F 0.35 tolerated(0.18) benign(0.17) TCGA-50-5931-01 20 61467557 61467557 C A COL9A3 Missense_Mutation p.L474M 0.47 tolerated(0.28) probably_damaging(0.993) TCGA-50-5931-01 21 11049614 11049614 T A BAGE2 RNA 0.06 TCGA-50-5931-01 21 31066378 31066378 C A GRIK1 Silent p.G41G 0.42 TCGA-50-5931-01 21 34793969 34793969 C T IFNGR2 Missense_Mutation p.P130L 0.33 deleterious(0) possibly_damaging(0.807) TCGA-50-5931-01 21 47333886 47333886 A G PCBP3 Missense_Mutation p.I208V 0.36 tolerated(0.08) benign(0.011) TCGA-50-5931-01 21 47970495 47970495 G T DIP2A Missense_Mutation p.A893S 0.36 tolerated(0.07) probably_damaging(0.968) TCGA-50-5931-01 22 17488963 17488963 T G GAB4 Silent p.P14P 0.64 TCGA-50-5931-01 22 23090124 23090124 T G IGLV3-16 Nonsense_Mutation p.Y21* 0.52 TCGA-50-5931-01 22 42456311 42456311 A G NAGA Missense_Mutation p.I403T 0.33 tolerated(0.23) benign(0.001) TCGA-50-5931-01 22 45960776 45960776 G T FBLN1 Intron 0.38 TCGA-50-5931-01 2 101014379 101014379 C A CHST10 Missense_Mutation p.V140F 0.40 deleterious(0) benign(0.355) TCGA-50-5931-01 2 103061712 103061712 G C IL18RAP Missense_Mutation p.Q328H 0.39 deleterious(0.03) probably_damaging(0.928) TCGA-50-5931-01 2 114258219 114258219 A T FOXD4L1 3'UTR 0.65 TCGA-50-5931-01 2 121999986 121999986 G T TFCP2L1 Silent p.A239A 0.30 TCGA-50-5931-01 2 179403333 179403333 C T TTN Missense_Mutation p.A33075T 0.54 TCGA-50-5931-01 2 179437609 179437609 G T TTN Missense_Mutation p.P24417Q 0.47 TCGA-50-5931-01 2 179437610 179437610 G T TTN Missense_Mutation p.P24417T 0.48 TCGA-50-5931-01 2 179553413 179553413 G T TTN Silent p.R10730R 0.20 TCGA-50-5931-01 2 179593427 179593427 G T TTN Missense_Mutation p.A6409D 0.44 TCGA-50-5931-01 2 190926980 190926980 T A MSTN Missense_Mutation p.T115S 0.21 deleterious(0.04) benign(0.393) TCGA-50-5931-01 2 198570098 198570098 G A MARS2 5'UTR 0.38 TCGA-50-5931-01 2 207482345 207482345 C A ADAM23 Silent p.P831P 0.32 TCGA-50-5931-01 2 209182591 209182591 A T PIKFYVE Missense_Mutation p.I670F 0.19 deleterious(0) probably_damaging(0.999) TCGA-50-5931-01 2 230678748 230678748 C A TRIP12 Splice_Site p.X561_splice 0.49 TCGA-50-5931-01 2 232392962 232392962 C A NMUR1 Missense_Mutation p.R257L 0.20 tolerated(0.13) benign(0.152) TCGA-50-5931-01 2 25470989 25470989 C T DNMT3A Missense_Mutation p.V258M 0.42 tolerated(0.11) possibly_damaging(0.569) TCGA-50-5931-01 2 27726407 27726407 C A GCKR Nonsense_Mutation p.S224* 0.37 TCGA-50-5931-01 2 27726409 27726409 A T GCKR Missense_Mutation p.T225S 0.38 tolerated(0.12) benign(0.445) TCGA-50-5931-01 2 47643558 47643558 A G MSH2 Missense_Mutation p.I356V 0.35 deleterious(0.02) benign(0.258) TCGA-50-5931-01 2 66739408 66739408 G C MEIS1 Missense_Mutation p.W290C 0.41 deleterious(0) probably_damaging(1) TCGA-50-5931-01 2 79255397 79255397 G C REG3G Missense_Mutation p.D175H 0.38 tolerated(0.08) benign(0.046) TCGA-50-5931-01 2 90212167 90212167 C G IGKV3D-11 Missense_Mutation p.P87A 0.23 deleterious(0.05) benign(0) TCGA-50-5931-01 2 96789882 96789882 C A ASTL Missense_Mutation p.V335F 0.40 deleterious_low_confidence(0.01) benign(0.197) TCGA-50-5931-01 3 115395236 115395236 G C GAP43 Missense_Mutation p.G172A 0.27 tolerated(0.79) benign(0.008) TCGA-50-5931-01 3 121208549 121208549 G C POLQ Missense_Mutation p.L1077V 0.66 tolerated_low_confidence(0.55) benign(0.003) TCGA-50-5931-01 3 123663717 123663717 C G CCDC14 Missense_Mutation p.S448T 0.15 deleterious(0) possibly_damaging(0.682) TCGA-50-5931-01 3 124438335 124438335 T C RP11-71H17.7 5'Flank 0.65 TCGA-50-5931-01 3 124746194 124746194 C A HEG1 Silent p.S256S 0.21 TCGA-50-5931-01 3 130095082 130095082 C - COL6A5 Frame_Shift_Del p.P24Qfs*26 0.29 TCGA-50-5931-01 3 130735084 130735084 G T ASTE1 Missense_Mutation p.T538K 0.25 deleterious(0.04) benign(0.145) TCGA-50-5931-01 3 138724422 138724422 G T PRR23A Missense_Mutation p.P230H 0.27 deleterious(0) probably_damaging(0.971) TCGA-50-5931-01 3 138724423 138724423 G T PRR23A Missense_Mutation p.P230T 0.27 deleterious(0) possibly_damaging(0.876) TCGA-50-5931-01 3 143214238 143214238 C A SLC9A9 Missense_Mutation p.G381V 0.25 deleterious(0.03) probably_damaging(1) TCGA-50-5931-01 3 147108869 147108869 T C ZIC4 Missense_Mutation p.M335V 0.20 deleterious(0.01) possibly_damaging(0.685) TCGA-50-5931-01 3 165491179 165491180 CA - BCHE Frame_Shift_Del p.V600Gfs*37 0.27 TCGA-50-5931-01 3 167183295 167183295 C T SERPINI2 Missense_Mutation p.M215I 0.62 deleterious(0.04) possibly_damaging(0.696) TCGA-50-5931-01 3 169710594 169710594 A C SEC62 Missense_Mutation p.S315R 0.29 tolerated(0.12) unknown(0) TCGA-50-5931-01 3 173993224 173993224 A T NLGN1 Missense_Mutation p.T256S 0.29 deleterious(0) probably_damaging(0.946) TCGA-50-5931-01 3 179322664 179322665 CG T NDUFB5 Frame_Shift_Del p.R21Cfs*48 0.29 TCGA-50-5931-01 3 186015996 186015996 T A DGKG Missense_Mutation p.K56M 0.14 deleterious(0.01) possibly_damaging(0.62) TCGA-50-5931-01 3 186338396 186338396 C G AHSG Missense_Mutation p.P261A 0.23 deleterious(0.03) possibly_damaging(0.868) TCGA-50-5931-01 3 191179085 191179085 C G PYDC2 Missense_Mutation p.T45R 0.61 tolerated(0.18) benign(0.136) TCGA-50-5931-01 3 46944143 46944143 T C PTH1R Missense_Mutation p.F447L 0.83 deleterious(0.01) probably_damaging(0.92) TCGA-50-5931-01 3 50230772 50230772 A G GNAT1 Missense_Mutation p.Q75R 0.77 deleterious(0.01) possibly_damaging(0.679) TCGA-50-5931-01 3 97605504 97605504 C A CRYBG3 Missense_Mutation p.F446L 0.12 tolerated(0.84) benign(0) TCGA-50-5931-01 4 100207958 100207958 A T ADH1A Intron 0.61 TCGA-50-5931-01 4 114280096 114280096 G A ANK2 Missense_Mutation p.R3441Q 0.16 benign(0.053) TCGA-50-5931-01 4 122734443 122734443 A T EXOSC9 Silent p.T294T 0.54 TCGA-50-5931-01 4 123271219 123271219 A T KIAA1109 Silent p.S4613S 0.56 TCGA-50-5931-01 4 128694757 128694757 G T SLC25A31 3'UTR 0.14 TCGA-50-5931-01 4 147562010 147562010 T A POU4F2 3'UTR 0.54 TCGA-50-5931-01 4 156831336 156831336 G C TDO2 Missense_Mutation p.Q197H 0.11 tolerated(0.06) benign(0.049) TCGA-50-5931-01 4 169842780 169842780 G T PALLD Silent p.G982G 0.48 TCGA-50-5931-01 4 177100788 177100788 G T WDR17 3'UTR 0.35 TCGA-50-5931-01 4 188923926 188923926 G T ZFP42 5'UTR 0.54 TCGA-50-5931-01 4 22749429 22749429 A - GBA3 Frame_Shift_Del p.V267Lfs*9 0.19 TCGA-50-5931-01 4 2674026 2674026 A C FAM193A Missense_Mutation p.H462P 0.45 tolerated(0.07) probably_damaging(0.984) TCGA-50-5931-01 4 26744202 26744202 C T TBC1D19 Nonsense_Mutation p.R434* 0.48 TCGA-50-5931-01 4 57181643 57181643 C A KIAA1211 Missense_Mutation p.P659T 0.43 tolerated(0.59) possibly_damaging(0.803) TCGA-50-5931-01 4 5754652 5754652 G T EVC Silent p.R396R 0.51 TCGA-50-5931-01 4 5837732 5837732 C T CRMP1 Silent p.R511R 0.35 TCGA-50-5931-01 4 74702948 74702948 T G CXCL6 Missense_Mutation p.C91G 0.54 deleterious(0) probably_damaging(1) TCGA-50-5931-01 4 88239557 88239557 C T HSD17B13 Missense_Mutation p.R81Q 0.05 tolerated(0.29) benign(0.127) TCGA-50-5931-01 4 96761509 96761509 C A PDHA2 Missense_Mutation p.R70S 0.51 deleterious(0) probably_damaging(0.992) TCGA-50-5931-01 5 134346177 134346177 A T CATSPER3 Missense_Mutation p.I351F 0.26 deleterious(0.01) possibly_damaging(0.777) TCGA-50-5931-01 5 137515415 137515415 G T KIF20A Missense_Mutation p.D16Y 0.07 deleterious(0) possibly_damaging(0.616) TCGA-50-5931-01 5 140256399 140256399 G A PCDHA12 Missense_Mutation p.V448M 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.743) TCGA-50-5931-01 5 140475631 140475631 C A PCDHB2 Nonsense_Mutation p.Y419* 0.38 TCGA-50-5931-01 5 140480379 140480379 C T PCDHB3 Missense_Mutation p.A49V 0.52 tolerated_low_confidence(0.17) benign(0.139) TCGA-50-5931-01 5 140559000 140559000 G C PCDHB8 Missense_Mutation p.R462P 0.15 tolerated_low_confidence(0.16) benign(0.008) TCGA-50-5931-01 5 140744879 140744879 G T PCDHGA5 Missense_Mutation p.V328F 0.37 tolerated_low_confidence(0.23) benign(0.004) TCGA-50-5931-01 5 145523006 145523006 G A LARS Missense_Mutation p.H616Y 0.37 tolerated(0.83) benign(0) TCGA-50-5931-01 5 154270801 154270801 C A GEMIN5 Missense_Mutation p.C1421F 0.40 tolerated(0.7) benign(0.002) TCGA-50-5931-01 5 176314548 176314548 C A HK3 Missense_Mutation p.A502S 0.43 tolerated(0.7) benign(0.1) TCGA-50-5931-01 5 176314549 176314549 C A HK3 Missense_Mutation p.Q501H 0.40 deleterious(0.02) probably_damaging(0.942) TCGA-50-5931-01 5 180047710 180047710 C A FLT4 Nonsense_Mutation p.E769* 0.62 TCGA-50-5931-01 5 180581967 180581967 T A OR2V2 Missense_Mutation p.Y9N 0.43 tolerated(0.31) benign(0.016) TCGA-50-5931-01 5 19747077 19747077 A G CDH18 Missense_Mutation p.V166A 0.65 tolerated(1) benign(0.005) TCGA-50-5931-01 5 26916033 26916033 C A CDH9 Splice_Site p.X77_splice 0.24 TCGA-50-5931-01 5 2749032 2749032 C G IRX2 Missense_Mutation p.E264Q 0.67 tolerated(0.29) benign(0.287) TCGA-50-5931-01 5 39021212 39021212 G A RICTOR Missense_Mutation p.L42F 0.21 deleterious(0) probably_damaging(0.999) TCGA-50-5931-01 5 41142976 41142976 C A C6 Missense_Mutation p.C919F 0.63 deleterious(0) probably_damaging(0.999) TCGA-50-5931-01 5 50056133 50056133 A T PARP8 Missense_Mutation p.R94S 0.58 tolerated_low_confidence(0.07) benign(0.069) TCGA-50-5931-01 5 72743820 72743820 A T FOXD1 Missense_Mutation p.L123Q 0.33 deleterious_low_confidence(0.01) probably_damaging(0.963) TCGA-50-5931-01 5 80388641 80388641 C T RASGRF2 Missense_Mutation p.S471F 0.36 tolerated(0.09) possibly_damaging(0.896) TCGA-50-5931-01 5 82491599 82491599 G T XRCC4 Missense_Mutation p.G109V 0.42 deleterious(0.02) probably_damaging(1) TCGA-50-5931-01 5 82937473 82937473 G T HAPLN1 Missense_Mutation p.R303S 0.38 deleterious(0.02) possibly_damaging(0.828) TCGA-50-5931-01 5 82937474 82937474 G T HAPLN1 Missense_Mutation p.D302E 0.39 deleterious(0) probably_damaging(0.999) TCGA-50-5931-01 6 100838768 100838768 G C SIM1 Missense_Mutation p.D590E 0.61 tolerated_low_confidence(0.62) benign(0.007) TCGA-50-5931-01 6 105549026 105549026 C G BVES Missense_Mutation p.D341H 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.735) TCGA-50-5931-01 6 110086283 110086283 G A FIG4 Missense_Mutation p.G501E 0.34 deleterious(0) probably_damaging(0.997) TCGA-50-5931-01 6 112513053 112513053 C A LAMA4 Splice_Site p.X168_splice 0.38 TCGA-50-5931-01 6 127440428 127440428 C A RSPO3 Silent p.R31R 0.40 TCGA-50-5931-01 6 133849905 133849905 C A EYA4 Missense_Mutation p.L628M 0.52 tolerated(0.41) possibly_damaging(0.623) TCGA-50-5931-01 6 147123833 147123833 C G ADGB Intron 0.27 TCGA-50-5931-01 6 151247409 151247409 G T MTHFD1L Nonsense_Mutation p.G412* 0.50 TCGA-50-5931-01 6 161134032 161134032 C A PLG Missense_Mutation p.T141K 0.51 tolerated(1) benign(0.001) TCGA-50-5931-01 6 24447133 24447133 G A GPLD1 Missense_Mutation p.H585Y 0.48 tolerated(0.33) benign(0.411) TCGA-50-5931-01 6 24533937 24533937 G T ALDH5A1 Missense_Mutation p.L548F 0.34 deleterious(0) probably_damaging(0.984) TCGA-50-5931-01 6 26509112 26509112 G T BTN1A1 Nonsense_Mutation p.G431* 0.39 TCGA-50-5931-01 6 28501899 28501899 C T GPX5 Silent p.V207V 0.62 TCGA-50-5931-01 6 29364862 29364862 G T OR12D2 Missense_Mutation p.R129L 0.42 tolerated(0.21) benign(0.009) TCGA-50-5931-01 6 29595311 29595311 C A GABBR1 Missense_Mutation p.R203S 0.25 tolerated(1) benign(0.003) TCGA-50-5931-01 6 34003675 34003675 G A GRM4 Missense_Mutation p.R738C 0.37 deleterious(0.01) benign(0.436) TCGA-50-5931-01 6 35715159 35715159 G T ARMC12 Missense_Mutation p.R216L 0.26 tolerated(0.08) possibly_damaging(0.747) TCGA-50-5931-01 6 35715160 35715160 G T ARMC12 Silent p.R216R 0.26 TCGA-50-5931-01 6 38743667 38743667 A - DNAH8 Frame_Shift_Del p.R418Efs*10 0.27 TCGA-50-5931-01 6 42162358 42162358 C A GUCA1B Missense_Mutation p.K67N 0.53 deleterious(0.05) possibly_damaging(0.673) TCGA-50-5931-01 6 55216094 55216094 T C GFRAL Silent p.C138C 0.41 TCGA-50-5931-01 6 55924964 55924964 G T COL21A1 Nonsense_Mutation p.C820* 0.42 TCGA-50-5931-01 6 56469819 56469819 C T DST Intron 0.42 TCGA-50-5931-01 6 56472232 56472232 T C DST Intron 0.29 TCGA-50-5931-01 6 70092758 70092758 A G BAI3 Silent p.L1437L 0.42 TCGA-50-5931-01 6 70916968 70916968 G A COL19A1 Missense_Mutation p.G1140D 0.45 tolerated_low_confidence(0.1) benign(0.063) TCGA-50-5931-01 6 71004158 71004158 G C COL9A1 Silent p.S136S 0.46 TCGA-50-5931-01 6 73102459 73102459 G T RIMS1 Missense_Mutation p.G1522V 0.36 deleterious(0) probably_damaging(0.997) TCGA-50-5931-01 6 74528210 74528210 G T CD109 Silent p.V1337V 0.40 TCGA-50-5931-01 6 89981397 89981397 C A GABRR2 Missense_Mutation p.D89Y 0.33 deleterious(0) probably_damaging(1) TCGA-50-5931-01 7 100675733 100675733 G T MUC17 Missense_Mutation p.V346F 0.23 possibly_damaging(0.615) TCGA-50-5931-01 7 112462041 112462041 T C C7orf60 Missense_Mutation p.T326A 0.28 tolerated(0.21) benign(0.004) TCGA-50-5931-01 7 121653414 121653414 C A PTPRZ1 Silent p.S1438S 0.26 TCGA-50-5931-01 7 126410120 126410120 C A GRM8 Splice_Site p.X386_splice 0.57 TCGA-50-5931-01 7 138189108 138189108 G A TRIM24 Silent p.K146K 0.44 TCGA-50-5931-01 7 13971234 13971234 T A ETV1 Missense_Mutation p.H232L 0.55 tolerated(0.68) benign(0.213) TCGA-50-5931-01 7 14216483 14216484 - A DGKB Frame_Shift_Ins p.W763Lfs*53 0.32 TCGA-50-5931-01 7 144015640 144015640 C A OR2A1 Silent p.I141I 0.10 TCGA-50-5931-01 7 47859104 47859104 G A C7orf69 Splice_Site p.X93_splice 0.53 TCGA-50-5931-01 7 48312879 48312879 G T ABCA13 Missense_Mutation p.A1206S 0.65 benign(0.156) TCGA-50-5931-01 7 74152386 74152386 G A GTF2I Splice_Site p.X540_splice 0.16 TCGA-50-5931-01 7 82387927 82387927 C G PCLO Missense_Mutation p.W5131C 0.46 unknown(0) TCGA-50-5931-01 7 82579280 82579280 G T PCLO Silent p.R3542R 0.42 TCGA-50-5931-01 7 94058669 94058669 G C COL1A2 Missense_Mutation p.G1294A 0.47 unknown(0) TCGA-50-5931-01 7 99445825 99445825 G T CYP3A43 Missense_Mutation p.V157L 0.32 tolerated(0.07) benign(0.085) TCGA-50-5931-01 8 107752609 107752609 A G OXR1 Silent p.P735P 0.38 TCGA-50-5931-01 8 121262859 121262859 C G COL14A1 Missense_Mutation p.P869R 0.37 tolerated(0.12) benign(0.298) TCGA-50-5931-01 8 127568922 127568922 C T FAM84B Missense_Mutation p.R238H 0.44 tolerated(0.16) benign(0.008) TCGA-50-5931-01 8 143857447 143857447 C A LYNX1 5'UTR 0.38 TCGA-50-5931-01 8 144621365 144621365 T A ZC3H3 Missense_Mutation p.S58C 0.41 deleterious(0.04) benign(0.048) TCGA-50-5931-01 8 24775339 24775339 G T NEFM Silent p.P657P 0.89 TCGA-50-5931-01 8 2944645 2944645 C A CSMD1 Missense_Mutation p.W2483L 0.80 probably_damaging(0.917) TCGA-50-5931-01 8 39587426 39587426 C A ADAM18 Silent p.S729S 0.88 TCGA-50-5931-01 8 42865485 42865485 G C HOOK3 Missense_Mutation p.K592N 0.10 deleterious(0) possibly_damaging(0.855) TCGA-50-5931-01 8 72754742 72754742 C A MSC 3'UTR 0.49 TCGA-50-5931-01 8 77763422 77763422 G T ZFHX4 Missense_Mutation p.R1422L 0.50 benign(0.433) TCGA-50-5931-01 8 77764395 77764395 G T ZFHX4 Silent p.T1746T 0.33 TCGA-50-5931-01 8 88296927 88296927 G - CNBD1 Frame_Shift_Del p.T266Lfs*18 0.33 TCGA-50-5931-01 8 89209482 89209482 C T MMP16 Silent p.V62V 0.28 TCGA-50-5931-01 9 115759674 115759674 C T ZNF883 RNA 0.05 TCGA-50-5931-01 9 125281945 125281945 C A OR1J4 Missense_Mutation p.H176N 0.71 deleterious_low_confidence(0.05) benign(0.35) TCGA-50-5931-01 9 125316138 125316138 G A OR1N2 Silent p.L230L 0.82 TCGA-50-5931-01 9 131749115 131749115 C T NUP188 Missense_Mutation p.A742V 0.07 tolerated(0.24) benign(0.429) TCGA-50-5931-01 9 134351524 134351524 A G PRRC2B Silent p.A1336A 0.67 TCGA-50-5931-01 9 139413252 139413252 T C NOTCH1 Missense_Mutation p.D297G 0.95 deleterious(0) probably_damaging(0.973) TCGA-50-5931-01 9 21333334 21333334 A G KLHL9 Missense_Mutation p.Y509H 0.83 tolerated(0.15) probably_damaging(0.995) TCGA-50-5931-01 9 37745436 37745436 C T FRMPD1 Missense_Mutation p.S1136F 0.83 tolerated_low_confidence(0.1) benign(0.002) TCGA-50-5931-01 X 102632353 102632353 A T NGFRAP1 Intron 0.48 TCGA-50-5931-01 X 105167150 105167150 T A NRK Missense_Mutation p.V885E 0.43 deleterious(0) possibly_damaging(0.649) TCGA-50-5931-01 X 109924711 109924711 C A CHRDL1 Missense_Mutation p.K385N 0.41 deleterious(0) possibly_damaging(0.776) TCGA-50-5931-01 X 117570726 117570726 G C WDR44 Missense_Mutation p.R638T 0.43 deleterious(0.02) benign(0.417) TCGA-50-5931-01 X 118972013 118972013 G T UPF3B Missense_Mutation p.P337T 0.43 tolerated(0.5) benign(0.196) TCGA-50-5931-01 X 120182428 120182428 C A GLUD2 Missense_Mutation p.P297Q 0.42 deleterious(0) benign(0.188) TCGA-50-5931-01 X 125299865 125299865 C A DCAF12L2 Missense_Mutation p.A15S 0.35 tolerated_low_confidence(0.16) benign(0.002) TCGA-50-5931-01 X 129148566 129148566 G C BCORL1 Missense_Mutation p.Q606H 0.33 probably_damaging(0.998) TCGA-50-5931-01 X 129306210 129306210 G T RAB33A Silent p.G58G 0.31 TCGA-50-5931-01 X 131351358 131351358 C T RAP2C 5'UTR 0.35 TCGA-50-5931-01 X 134427710 134427710 C A ZNF75D Missense_Mutation p.Q119H 0.52 deleterious(0) probably_damaging(0.992) TCGA-50-5931-01 X 135067822 135067822 A T SLC9A6 Missense_Mutation p.D54V 0.33 tolerated(0.21) benign(0.028) TCGA-50-5931-01 X 135631064 135631064 C T VGLL1 Silent p.C177C 0.04 TCGA-50-5931-01 X 138642899 138642899 G T F9 Splice_Site p.X242_splice 0.45 TCGA-50-5931-01 X 138689898 138689898 C A MCF2 Missense_Mutation p.G557V 0.37 tolerated(0.5) benign(0.001) TCGA-50-5931-01 X 138880430 138880430 A G ATP11C Splice_Site p.X289_splice 0.24 TCGA-50-5931-01 X 14863236 14863236 C G FANCB Missense_Mutation p.D557H 0.45 tolerated(0.64) benign(0.013) TCGA-50-5931-01 X 148693003 148693003 C A TMEM185A Missense_Mutation p.G61V 0.36 deleterious(0) probably_damaging(0.998) TCGA-50-5931-01 X 150891306 150891306 C A FATE1 3'UTR 0.53 TCGA-50-5931-01 X 152825273 152825273 C A ATP2B3 Silent p.P904P 0.49 TCGA-50-5931-01 X 152958790 152958790 A T SLC6A8 Missense_Mutation p.S329C 0.40 deleterious(0) probably_damaging(1) TCGA-50-5931-01 X 152991456 152991456 C T ABCD1 Silent p.A245A 0.58 TCGA-50-5931-01 X 153582821 153582821 C G FLNA Missense_Mutation p.G1782R 0.36 deleterious(0.04) possibly_damaging(0.56) TCGA-50-5931-01 X 153596271 153596271 G T FLNA Missense_Mutation p.N187K 0.38 deleterious(0) probably_damaging(1) TCGA-50-5931-01 X 154157090 154157090 G T F8 Missense_Mutation p.P1659T 0.41 tolerated(0.06) possibly_damaging(0.735) TCGA-50-5931-01 X 17819005 17819005 C T RAI2 Missense_Mutation p.E376K 0.33 tolerated(0.31) unknown(0) TCGA-50-5931-01 X 18221854 18221854 C G BEND2 Missense_Mutation p.G225A 0.15 tolerated(0.43) benign(0.138) TCGA-50-5931-01 X 18836203 18836203 G A PPEF1 Missense_Mutation p.V481M 0.39 tolerated(0.28) benign(0.003) TCGA-50-5931-01 X 29973708 29973708 A G IL1RAPL1 Missense_Mutation p.Q621R 0.37 deleterious_low_confidence(0.04) probably_damaging(0.953) TCGA-50-5931-01 X 35821060 35821060 C A MAGEB16 Silent p.L249L 0.44 TCGA-50-5931-01 X 37029629 37029629 C A FAM47C 3'UTR 0.40 TCGA-50-5931-01 X 40496313 40496313 C G CXorf38 Silent p.L189L 0.47 TCGA-50-5931-01 X 48780529 48780529 C A OTUD5 Silent p.L546L 0.36 TCGA-50-5931-01 X 48972658 48972658 G C GPKOW Silent p.A311A 0.36 TCGA-50-5931-01 X 49034397 49034397 G T PRICKLE3 Nonsense_Mutation p.C300* 0.34 TCGA-50-5931-01 X 51486783 51486783 G T GSPT2 Nonsense_Mutation p.E21* 0.31 TCGA-50-5931-01 X 53458022 53458022 C T RIBC1 3'UTR 0.45 TCGA-50-5931-01 X 54949157 54949157 C A TRO Missense_Mutation p.N64K 0.37 tolerated_low_confidence(0.07) unknown(0) TCGA-50-5931-01 X 63488738 63488738 C T MTMR8 Missense_Mutation p.M598I 0.45 deleterious_low_confidence(0.02) benign(0) TCGA-50-5931-01 X 65259825 65259825 C A VSIG4 Missense_Mutation p.G6C 0.27 deleterious(0) unknown(0) TCGA-50-5931-01 X 65415023 65415023 C A HEPH Missense_Mutation p.H539N 0.45 deleterious(0) probably_damaging(0.997) TCGA-50-5931-01 X 69622419 69622419 T A KIF4A Missense_Mutation p.S831R 0.34 deleterious(0.02) possibly_damaging(0.774) TCGA-50-5931-01 X 70321152 70321152 G T FOXO4 Missense_Mutation p.G358W 0.62 deleterious(0) possibly_damaging(0.702) TCGA-50-5931-01 X 78216792 78216792 T C P2RY10 Missense_Mutation p.Y259H 0.50 deleterious(0) probably_damaging(0.984) TCGA-50-5931-01 X 78426678 78426678 G C GPR174 Missense_Mutation p.M58I 0.36 deleterious(0.03) probably_damaging(0.974) TCGA-50-5931-01 X 85213879 85213879 C A CHM Missense_Mutation p.G269V 0.28 deleterious(0) probably_damaging(1) TCGA-50-5932-01 10 101560182 101560182 G A ABCC2 Silent p.L357L 0.42 TCGA-50-5932-01 10 121196346 121196346 G A GRK5 Missense_Mutation p.V308I 0.50 tolerated(0.16) benign(0.014) TCGA-50-5932-01 10 129903806 129903806 T C MKI67 Missense_Mutation p.K2100E 0.40 tolerated(0.35) benign(0.253) TCGA-50-5932-01 10 129905293 129905293 G C MKI67 Nonsense_Mutation p.S1604* 0.39 TCGA-50-5932-01 11 128838914 128838914 G A ARHGAP32 Missense_Mutation p.P2051L 0.60 deleterious_low_confidence(0) benign(0.05) TCGA-50-5932-01 11 18956320 18956320 G - MRGPRX1 Frame_Shift_Del p.I5Sfs*8 0.25 TCGA-50-5932-01 11 65273658 65273659 - T MALAT1 RNA 0.29 TCGA-50-5932-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.45 deleterious(0.04) probably_damaging(0.993) TCGA-50-5932-01 12 30814173 30814173 T A IPO8 Missense_Mutation p.S595C 0.48 deleterious(0) possibly_damaging(0.894) TCGA-50-5932-01 12 5154154 5154154 C T KCNA5 Silent p.L281L 0.34 TCGA-50-5932-01 12 5154155 5154155 T A KCNA5 Missense_Mutation p.L281Q 0.35 tolerated(0.05) benign(0.011) TCGA-50-5932-01 12 80717602 80717602 C A OTOGL Missense_Mutation p.A1385E 0.82 tolerated(0.37) benign(0.061) TCGA-50-5932-01 12 94772782 94772782 T C CCDC41 Missense_Mutation p.N196D 0.65 tolerated(0.25) benign(0.005) TCGA-50-5932-01 13 113773364 113773364 C T F7 3'UTR 0.46 TCGA-50-5932-01 13 114290924 114290924 G T TFDP1 Missense_Mutation p.M305I 0.37 deleterious(0.01) benign(0.224) TCGA-50-5932-01 13 114290925 114290925 G T TFDP1 Missense_Mutation p.A306S 0.35 tolerated(0.54) possibly_damaging(0.811) TCGA-50-5932-01 13 36788621 36788621 C T SOHLH2 Intron 0.36 TCGA-50-5932-01 14 106173620 106173620 C G IGHA1 Missense_Mutation p.G316A 0.13 tolerated(0.11) probably_damaging(0.985) TCGA-50-5932-01 15 20490577 20490577 C A CHEK2P2 RNA 0.05 TCGA-50-5932-01 15 22368728 22368728 A G OR4M2 Silent p.L51L 0.11 TCGA-50-5932-01 15 40284993 40284993 A T EIF2AK4 Missense_Mutation p.T904S 0.41 deleterious(0) probably_damaging(1) TCGA-50-5932-01 15 58889786 58889786 C A ADAM10 Missense_Mutation p.R736L 0.37 tolerated(0.23) benign(0.337) TCGA-50-5932-01 16 4057495 4057495 G A ADCY9 Silent p.A586A 0.43 TCGA-50-5932-01 16 88722721 88722721 A T MVD Intron 0.47 TCGA-50-5932-01 16 89795695 89795695 G T ZNF276 Missense_Mutation p.D380Y 0.46 deleterious(0) probably_damaging(0.999) TCGA-50-5932-01 17 17720399 17720399 T C SREBF1 Missense_Mutation p.N583S 0.52 tolerated(0.09) possibly_damaging(0.792) TCGA-50-5932-01 17 51900368 51900368 C A KIF2B 5'UTR 0.47 TCGA-50-5932-01 17 77758474 77758474 G T CBX2 Missense_Mutation p.S411I 0.25 deleterious(0.02) benign(0.429) TCGA-50-5932-01 18 29054174 29054174 C A DSG3 Missense_Mutation p.S731Y 0.37 tolerated(1) possibly_damaging(0.643) TCGA-50-5932-01 18 29206995 29206995 C A B4GALT6 Missense_Mutation p.G289V 0.43 deleterious(0) probably_damaging(1) TCGA-50-5932-01 18 6241361 6241361 C G L3MBTL4 Missense_Mutation p.S183T 0.36 tolerated(0.33) benign(0.015) TCGA-50-5932-01 18 77679237 77679237 C A PQLC1 Silent p.L185L 0.36 TCGA-50-5932-01 19 43519460 43519460 C A PSG11 Missense_Mutation p.D258Y 0.59 tolerated(0.26) benign(0.018) TCGA-50-5932-01 19 48339553 48339553 G T CRX Nonsense_Mutation p.E52* 0.74 TCGA-50-5932-01 19 9075084 9075084 G T MUC16 Missense_Mutation p.T4121N 0.72 unknown(0) TCGA-50-5932-01 19 9362240 9362240 C A OR7E24 Missense_Mutation p.S174Y 0.64 deleterious(0.01) probably_damaging(0.968) TCGA-50-5932-01 1 1372746 1372746 C A VWA1 Silent p.G171G 0.76 TCGA-50-5932-01 1 149898433 149898433 C G SF3B4 Missense_Mutation p.D181H 0.43 deleterious(0) probably_damaging(0.971) TCGA-50-5932-01 1 154401899 154401899 A T IL6R Missense_Mutation p.T105S 0.69 tolerated(0.45) benign(0.002) TCGA-50-5932-01 1 156268923 156268923 C A VHLL Missense_Mutation p.A20S 0.26 tolerated_low_confidence(0.56) benign(0.015) TCGA-50-5932-01 1 160011167 160011167 G A KCNJ10 3'UTR 0.21 TCGA-50-5932-01 1 175048765 175048765 G T TNN Missense_Mutation p.D236Y 0.65 deleterious(0.01) probably_damaging(0.921) TCGA-50-5932-01 1 237777543 237777543 G T RYR2 Silent p.L1705L 0.72 TCGA-50-5932-01 1 34666416 34666416 C A C1orf94 Missense_Mutation p.S351R 0.81 deleterious(0) possibly_damaging(0.809) TCGA-50-5932-01 1 45120854 45120854 G A TMEM53 Missense_Mutation p.P71S 0.30 deleterious(0.01) probably_damaging(0.98) TCGA-50-5932-01 1 48764544 48764556 GCCACGTGGCTGC - SPATA6 Frame_Shift_Del p.Q433Lfs*61 0.40 TCGA-50-5932-01 1 62235060 62235060 G T INADL Missense_Mutation p.V164L 0.41 deleterious(0) probably_damaging(0.914) TCGA-50-5932-01 1 71546733 71546733 G T ZRANB2 5'UTR 0.37 TCGA-50-5932-01 20 2842546 2842546 G T VPS16 Splice_Site p.X332_splice 0.21 TCGA-50-5932-01 20 30510852 30510852 A G TTLL9 Missense_Mutation p.I220M 0.48 deleterious(0) possibly_damaging(0.877) TCGA-50-5932-01 20 45221081 45221081 C A SLC13A3 Missense_Mutation p.W294C 0.37 deleterious(0) probably_damaging(0.997) TCGA-50-5932-01 20 54824041 54824041 C A MC3R Missense_Mutation p.L48M 0.47 deleterious(0) probably_damaging(0.999) TCGA-50-5932-01 20 62126186 62126186 C A EEF1A2 Missense_Mutation p.G198V 0.50 deleterious_low_confidence(0) probably_damaging(1) TCGA-50-5932-01 21 46624492 46624492 G T ADARB1 Nonsense_Mutation p.G570* 0.60 TCGA-50-5932-01 22 37196917 37196917 G T PVALB 3'UTR 0.70 TCGA-50-5932-01 22 50277679 50277679 T - ZBED4 Frame_Shift_Del p.F125Lfs*16 0.46 TCGA-50-5932-01 2 1652105 1652105 C T PXDN Silent p.T1149T 0.37 TCGA-50-5932-01 2 166747433 166747433 G A TTC21B Missense_Mutation p.P1006S 0.40 tolerated(0.06) benign(0.35) TCGA-50-5932-01 2 171854326 171854337 GTAAATACCTGT - TLK1 Splice_Site p.X635_splice 0.38 TCGA-50-5932-01 2 21234296 21234296 C A APOB Missense_Mutation p.R1815L 0.38 possibly_damaging(0.571) TCGA-50-5932-01 2 241621974 241621974 G T AQP12B Missense_Mutation p.P94H 0.46 deleterious(0) probably_damaging(0.999) TCGA-50-5932-01 2 241621975 241621975 G T AQP12B Missense_Mutation p.P94T 0.47 deleterious(0) probably_damaging(0.995) TCGA-50-5932-01 2 242009519 242009519 G A SNED1 Silent p.L1164L 0.50 TCGA-50-5932-01 2 28748151 28748151 G A PLB1 Silent p.T87T 0.41 TCGA-50-5932-01 3 8809379 8809379 C T OXTR Silent p.L165L 0.90 TCGA-50-5932-01 3 89448468 89448468 C A EPHA3 Missense_Mutation p.Q478K 0.74 tolerated(0.12) benign(0.183) TCGA-50-5932-01 3 9704014 9704014 G T MTMR14 Silent p.R124R 0.75 TCGA-50-5932-01 4 114095577 114095577 C A ANK2 Missense_Mutation p.D30E 0.48 probably_damaging(0.999) TCGA-50-5932-01 4 114238920 114238920 G T ANK2 Missense_Mutation p.R917S 0.30 probably_damaging(0.951) TCGA-50-5932-01 4 123855380 123855380 A T SPATA5 Missense_Mutation p.T212S 0.41 tolerated(0.44) benign(0.002) TCGA-50-5932-01 4 52943040 52943040 G A SPATA18 Missense_Mutation p.R285K 0.37 deleterious(0.01) benign(0) TCGA-50-5932-01 4 70361157 70361157 C A UGT2B4 Missense_Mutation p.Q141H 0.32 tolerated(0.06) benign(0.151) TCGA-50-5932-01 4 79428721 79428721 C T FRAS1 Nonsense_Mutation p.Q3155* 0.35 TCGA-50-5932-01 5 140723683 140723683 C A PCDHGA3 Missense_Mutation p.S28Y 0.43 deleterious_low_confidence(0.02) benign(0.07) TCGA-50-5932-01 5 14359507 14359507 C T TRIO Missense_Mutation p.S753F 0.48 probably_damaging(0.982) TCGA-50-5932-01 5 174869091 174869091 G T DRD1 Silent p.R338R 0.35 TCGA-50-5932-01 5 64267586 64267586 T A CWC27 Missense_Mutation p.Y367N 0.39 deleterious(0) probably_damaging(0.979) TCGA-50-5932-01 5 90020785 90020785 G T GPR98 Missense_Mutation p.Q3295H 0.37 possibly_damaging(0.781) TCGA-50-5932-01 6 159456981 159456981 G T TAGAP Missense_Mutation p.L692I 0.48 tolerated(0.17) benign(0.05) TCGA-50-5932-01 6 27792201 27792201 G A HIST1H4J Missense_Mutation p.G100D 0.25 deleterious_low_confidence(0.04) possibly_damaging(0.561) TCGA-50-5932-01 6 42797677 42797677 G T GLTSCR1L Nonsense_Mutation p.G536* 0.53 TCGA-50-5932-01 6 45480133 45480133 G T RUNX2 Missense_Mutation p.R337M 0.53 deleterious(0.01) possibly_damaging(0.838) TCGA-50-5932-01 7 20418673 20418673 G T ITGB8 Splice_Site p.X130_splice 0.33 TCGA-50-5932-01 7 31877567 31877567 T A PDE1C Silent p.V393V 0.40 TCGA-50-5932-01 7 56149703 56149703 G T PHKG1 Silent p.A257A 0.39 TCGA-50-5932-01 7 62758678 62758678 C A ZNF733P RNA 0.15 TCGA-50-5932-01 7 76950085 76950085 C T GSAP Silent p.R682R 0.33 TCGA-50-5932-01 7 99077308 99077308 G T ZNF789 Missense_Mutation p.A17S 0.38 deleterious(0.01) probably_damaging(0.972) TCGA-50-5932-01 8 100108540 100108540 G T VPS13B Missense_Mutation p.D98Y 0.36 deleterious(0) probably_damaging(0.988) TCGA-50-5932-01 8 101271232 101271232 C A RNF19A Missense_Mutation p.R690I 0.42 deleterious_low_confidence(0) possibly_damaging(0.541) TCGA-50-5932-01 8 104928660 104928660 G T RIMS2 Missense_Mutation p.W644L 0.42 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-50-5932-01 9 33676271 33676271 C T PTENP1 RNA 0.67 TCGA-50-5932-01 9 8521415 8521415 C T PTPRD Missense_Mutation p.D275N 0.61 deleterious(0) probably_damaging(0.993) TCGA-50-5932-01 X 110494814 110494824 AGGGGTTTCTC - CAPN6 Frame_Shift_Del p.R283Gfs*11 0.26 TCGA-50-5932-01 X 140995628 140995628 C T MAGEC1 Missense_Mutation p.P813L 0.64 deleterious_low_confidence(0.01) unknown(0) TCGA-50-5932-01 X 153662571 153662571 C T ATP6AP1 Silent p.A234A 0.06 TCGA-50-5933-01 10 100995424 100995424 G C HPSE2 Missense_Mutation p.P46A 0.12 tolerated(0.68) benign(0.001) TCGA-50-5933-01 10 102249088 102249088 T A SEC31B Missense_Mutation p.Q1031L 0.15 deleterious(0.02) benign(0.002) TCGA-50-5933-01 10 104377247 104377247 C T SUFU Intron 0.18 TCGA-50-5933-01 10 115374006 115374006 G T NRAP Missense_Mutation p.S1079Y 0.09 tolerated(0.33) probably_damaging(0.998) TCGA-50-5933-01 10 115531801 115531801 G A PLEKHS1 Missense_Mutation p.V203M 0.27 tolerated(0.16) benign(0.015) TCGA-50-5933-01 10 115922587 115922587 C A C10orf118 Missense_Mutation p.K147N 0.12 deleterious_low_confidence(0.04) benign(0.025) TCGA-50-5933-01 10 118196236 118196236 C T PNLIPRP3 Silent p.C21C 0.11 TCGA-50-5933-01 10 123844295 123844295 T C TACC2 Silent p.D760D 0.12 TCGA-50-5933-01 10 124598650 124598650 C T CUZD1 Missense_Mutation p.D111N 0.26 tolerated(0.15) benign(0.141) TCGA-50-5933-01 10 12870807 12870807 C T CAMK1D Missense_Mutation p.S360L 0.11 deleterious_low_confidence(0.01) benign(0.059) TCGA-50-5933-01 10 128974033 128974033 G C FAM196A Silent p.L209L 0.33 TCGA-50-5933-01 10 134013942 134013942 C A DPYSL4 Silent p.A298A 0.38 TCGA-50-5933-01 10 28228927 28228927 G A ARMC4 Missense_Mutation p.R666W 0.11 deleterious(0) probably_damaging(1) TCGA-50-5933-01 10 28970327 28970327 C T BAMBI Missense_Mutation p.L73F 0.20 tolerated(0.08) benign(0.021) TCGA-50-5933-01 10 43318582 43318582 C T BMS1 Missense_Mutation p.A1050V 0.12 tolerated(0.4) possibly_damaging(0.653) TCGA-50-5933-01 10 45498928 45498928 C T ZNF22 Nonsense_Mutation p.R38* 0.11 TCGA-50-5933-01 10 465069 465069 C G DIP2C Missense_Mutation p.Q225H 0.12 tolerated(0.14) benign(0.071) TCGA-50-5933-01 10 50944420 50944420 T C OGDHL Missense_Mutation p.I913V 0.15 tolerated(0.08) benign(0.034) TCGA-50-5933-01 10 55569195 55569195 T A PCDH15 Missense_Mutation p.T473S 0.12 deleterious_low_confidence(0.02) unknown(0) TCGA-50-5933-01 10 55600099 55600099 C T PCDH15 Missense_Mutation p.D1322N 0.25 tolerated(0.07) benign(0.281) TCGA-50-5933-01 10 55782676 55782676 A T PCDH15 Silent p.A834A 0.29 TCGA-50-5933-01 10 59956367 59956367 C G IPMK Missense_Mutation p.E241Q 0.25 tolerated(0.09) benign(0.171) TCGA-50-5933-01 10 70048269 70048269 C A PBLD Missense_Mutation p.W221L 0.11 deleterious(0) probably_damaging(0.998) TCGA-50-5933-01 10 73498295 73498295 G A CDH23 Missense_Mutation p.R1422Q 0.20 tolerated(1) benign(0.072) TCGA-50-5933-01 10 79601669 79601669 C A DLG5 Silent p.A469A 0.11 TCGA-50-5933-01 10 95993841 95993841 C A PLCE1 Missense_Mutation p.F662L 0.17 tolerated(0.29) probably_damaging(0.999) TCGA-50-5933-01 10 97144023 97144023 G A SORBS1 Silent p.Y460Y 0.20 TCGA-50-5933-01 11 117787940 117787940 C A TMPRSS13 Silent p.P167P 0.39 TCGA-50-5933-01 11 118960402 118960402 G C HMBS Silent p.L92L 0.44 TCGA-50-5933-01 11 120776196 120776196 C T GRIK4 Silent p.I490I 0.23 TCGA-50-5933-01 11 123471196 123471196 G T GRAMD1B Silent p.G187G 0.37 TCGA-50-5933-01 11 123900397 123900397 C - OR10G8 Frame_Shift_Del p.L25Sfs*22 0.24 TCGA-50-5933-01 11 1271325 1271325 T A MUC5B Silent p.T4405T 0.21 TCGA-50-5933-01 11 18050811 18050811 A - TPH1 Frame_Shift_Del p.C190Afs*32 0.13 TCGA-50-5933-01 11 18738526 18738526 C T IGSF22 Missense_Mutation p.G332E 0.08 tolerated(0.09) probably_damaging(0.932) TCGA-50-5933-01 11 4470602 4470602 A T OR52K2 Silent p.P11P 0.13 TCGA-50-5933-01 11 46740807 46740807 C A F2 Missense_Mutation p.Q8K 0.14 tolerated_low_confidence(0.33) benign(0.021) TCGA-50-5933-01 11 4929527 4929527 T A OR51A7 Missense_Mutation p.C310S 0.12 tolerated_low_confidence(0.44) benign(0.003) TCGA-50-5933-01 11 5021145 5021145 A G OR51L1 Silent p.L311L 0.19 TCGA-50-5933-01 11 5152927 5152927 T A OR52A5 Missense_Mutation p.T316S 0.11 tolerated(0.68) benign(0.006) TCGA-50-5933-01 11 5462206 5462206 T A OR51I1 Missense_Mutation p.Y180F 0.16 tolerated(0.2) benign(0.094) TCGA-50-5933-01 11 55433224 55433224 C A OR4C6 Silent p.G194G 0.27 TCGA-50-5933-01 11 55433583 55433583 G A OR4C6 3'UTR 0.44 TCGA-50-5933-01 11 55541472 55541472 G T OR5D13 Missense_Mutation p.V187F 0.24 deleterious(0.04) benign(0.114) TCGA-50-5933-01 11 55703126 55703126 T A OR5I1 Missense_Mutation p.T251S 0.08 tolerated(0.26) benign(0.023) TCGA-50-5933-01 11 55890084 55890084 C G OR8H3 Missense_Mutation p.T79R 0.10 deleterious(0) possibly_damaging(0.903) TCGA-50-5933-01 11 55944722 55944722 C G OR5J2 Missense_Mutation p.T210S 0.13 tolerated(0.43) possibly_damaging(0.718) TCGA-50-5933-01 11 56043396 56043396 G T OR5T1 Missense_Mutation p.L94F 0.24 deleterious(0) probably_damaging(0.984) TCGA-50-5933-01 11 56043397 56043397 G T OR5T1 Missense_Mutation p.V95F 0.24 deleterious(0.02) benign(0.379) TCGA-50-5933-01 11 57970951 57970951 T C OR1S2 Missense_Mutation p.I235V 0.25 tolerated(1) benign(0.014) TCGA-50-5933-01 11 59481191 59481191 G T OR10V1 Missense_Mutation p.A43D 0.25 deleterious(0.02) benign(0.14) TCGA-50-5933-01 11 5969356 5969356 G A OR56A3 Silent p.L260L 0.16 TCGA-50-5933-01 11 62358944 62358944 T C TUT1 Missense_Mutation p.D43G 0.16 tolerated(0.16) benign(0.014) TCGA-50-5933-01 11 62677634 62677634 G A CHRM1 Silent p.A313A 0.07 TCGA-50-5933-01 11 64940419 64940419 G A SPDYC Missense_Mutation p.G261S 0.12 tolerated(0.74) benign(0.006) TCGA-50-5933-01 11 66411619 66411619 G T RBM14-RBM4 Intron 0.45 TCGA-50-5933-01 11 7021692 7021692 G A ZNF214 Missense_Mutation p.H408Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-50-5933-01 11 82893518 82893518 T C PCF11 Silent p.I1467I 0.23 TCGA-50-5933-01 11 92532295 92532295 G A FAT3 Missense_Mutation p.G2039E 0.18 probably_damaging(1) TCGA-50-5933-01 12 100732925 100732925 A T SCYL2 Missense_Mutation p.N922I 0.13 deleterious_low_confidence(0) possibly_damaging(0.766) TCGA-50-5933-01 12 101295475 101295475 G T ANO4 5'UTR 0.17 TCGA-50-5933-01 12 104705135 104705135 A G TXNRD1 Missense_Mutation p.Y161C 0.31 deleterious(0) possibly_damaging(0.879) TCGA-50-5933-01 12 105428127 105428127 C G ALDH1L2 Missense_Mutation p.G732A 0.22 deleterious(0.01) probably_damaging(0.987) TCGA-50-5933-01 12 111318979 111318979 G A CCDC63 Silent p.Q244Q 0.27 TCGA-50-5933-01 12 114803965 114803965 C A TBX5 Intron 0.27 TCGA-50-5933-01 12 114803991 114803991 A C TBX5 Missense_Mutation p.Y321D 0.29 deleterious(0) probably_damaging(0.983) TCGA-50-5933-01 12 118671547 118671547 G C TAOK3 Missense_Mutation p.A192G 0.09 deleterious(0) benign(0.108) TCGA-50-5933-01 12 124428133 124428133 C A CCDC92 Intron 0.20 TCGA-50-5933-01 12 124817745 124817745 G A NCOR2 Missense_Mutation p.T2229M 0.24 possibly_damaging(0.872) TCGA-50-5933-01 12 130963548 130963548 G T RIMBP2 Missense_Mutation p.A4E 0.24 deleterious(0) probably_damaging(0.999) TCGA-50-5933-01 12 14577856 14577856 A T ATF7IP Missense_Mutation p.D336V 0.38 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-50-5933-01 12 31862270 31862270 A C AMN1 Missense_Mutation p.I43R 0.09 deleterious(0.05) benign(0.01) TCGA-50-5933-01 12 49172026 49172026 C A ADCY6 Silent p.V293V 0.12 TCGA-50-5933-01 12 50829370 50829370 G T LARP4 Missense_Mutation p.L166F 0.16 deleterious(0) probably_damaging(0.995) TCGA-50-5933-01 12 52799698 52799698 C A KRT82 Nonsense_Mutation p.E122* 0.07 TCGA-50-5933-01 12 52883764 52883764 T C KRT6A Missense_Mutation p.Q389R 0.24 deleterious(0) benign(0.346) TCGA-50-5933-01 12 53002076 53002076 C A KRT73 Silent p.G509G 0.09 TCGA-50-5933-01 12 53002077 53002077 C A KRT73 Missense_Mutation p.G509V 0.10 deleterious_low_confidence(0) possibly_damaging(0.558) TCGA-50-5933-01 12 57110843 57110843 T A NACA Intron 0.10 TCGA-50-5933-01 12 57398575 57398575 C T ZBTB39 Missense_Mutation p.A43T 0.27 deleterious(0) probably_damaging(0.998) TCGA-50-5933-01 12 59274658 59274658 C T LRIG3 Silent p.T502T 0.11 TCGA-50-5933-01 12 64502733 64502733 G A SRGAP1 Missense_Mutation p.R612K 0.04 tolerated(0.07) probably_damaging(0.992) TCGA-50-5933-01 12 70209151 70209151 G T RAB3IP Missense_Mutation p.Q452H 0.26 tolerated(0.08) benign(0.01) TCGA-50-5933-01 12 7064898 7064898 C T PTPN6 Missense_Mutation p.R275C 0.26 deleterious(0) probably_damaging(0.995) TCGA-50-5933-01 12 70954551 70954551 C A PTPRB Missense_Mutation p.E1444D 0.33 tolerated(0.08) benign(0.062) TCGA-50-5933-01 12 70960398 70960398 C A PTPRB Missense_Mutation p.A1241S 0.25 tolerated(0.23) benign(0.055) TCGA-50-5933-01 12 71029809 71029809 A G PTPRB Silent p.C31C 0.15 TCGA-50-5933-01 12 85285811 85285811 G T SLC6A15 Missense_Mutation p.A30D 0.10 tolerated(0.57) benign(0.046) TCGA-50-5933-01 12 91497992 91497992 G T LUM Missense_Mutation p.P323T 0.22 tolerated(0.33) benign(0.011) TCGA-50-5933-01 13 113718714 113718714 C T MCF2L Missense_Mutation p.R196W 0.11 deleterious(0) possibly_damaging(0.761) TCGA-50-5933-01 13 25341431 25341431 G A RNF17 Missense_Mutation p.C51Y 0.08 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-50-5933-01 13 28626770 28626770 T C FLT3 Missense_Mutation p.M176V 0.18 tolerated(0.56) benign(0) TCGA-50-5933-01 13 29599371 29599371 G A MTUS2 Missense_Mutation p.R189K 0.10 deleterious(0.03) benign(0.121) TCGA-50-5933-01 13 31480629 31480629 G A MEDAG 5'UTR 0.17 TCGA-50-5933-01 13 33739517 33739517 C T STARD13 Missense_Mutation p.D94N 0.12 deleterious(0.02) probably_damaging(1) TCGA-50-5933-01 13 37593535 37593535 C A SUPT20H Splice_Site p.X606_splice 0.14 TCGA-50-5933-01 13 39616394 39616394 G A NHLRC3 Missense_Mutation p.V180M 0.14 deleterious(0) possibly_damaging(0.819) TCGA-50-5933-01 13 49771970 49771970 A T FNDC3A Missense_Mutation p.K817I 0.25 deleterious(0) benign(0.239) TCGA-50-5933-01 13 60385030 60385030 T - DIAPH3 Frame_Shift_Del p.R1019Efs*12 0.17 TCGA-50-5933-01 13 61059946 61059946 A G TDRD3 Missense_Mutation p.H194R 0.27 tolerated(0.45) benign(0.062) TCGA-50-5933-01 13 70370930 70370930 T A KLHL1 Missense_Mutation p.N527Y 0.12 deleterious(0.01) possibly_damaging(0.748) TCGA-50-5933-01 13 72014709 72014709 T G DACH1 3'UTR 0.07 TCGA-50-5933-01 13 88327942 88327942 A T SLITRK5 Missense_Mutation p.E100V 0.15 tolerated(0.05) benign(0.439) TCGA-50-5933-01 13 88327943 88327943 G A SLITRK5 Silent p.E100E 0.15 TCGA-50-5933-01 14 101412023 101412023 G T SNORD113-9 RNA 0.14 TCGA-50-5933-01 14 101412024 101412024 G T SNORD113-9 RNA 0.15 TCGA-50-5933-01 14 104508469 104508469 C A TDRD9 Missense_Mutation p.L1307I 0.21 tolerated(0.13) benign(0.356) TCGA-50-5933-01 14 105411259 105411259 G T AHNAK2 Missense_Mutation p.S3510Y 0.09 benign(0.354) TCGA-50-5933-01 14 19553587 19553587 C A POTEG Silent p.L57L 0.04 TCGA-50-5933-01 14 20020050 20020050 G T POTEM Silent p.L57L 0.06 TCGA-50-5933-01 14 20295661 20295661 C A OR4N2 Silent p.T18T 0.08 TCGA-50-5933-01 14 20482705 20482705 C G OR4K14 Silent p.L216L 0.21 TCGA-50-5933-01 14 20586056 20586056 T A OR4K17 Missense_Mutation p.M164K 0.19 tolerated(0.38) benign(0.138) TCGA-50-5933-01 14 20612048 20612048 G T OR4N5 Missense_Mutation p.D52Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-50-5933-01 14 20711524 20711524 G T OR11H4 Missense_Mutation p.D192Y 0.14 deleterious(0) probably_damaging(0.987) TCGA-50-5933-01 14 20820432 20820432 G A PARP2 Missense_Mutation p.E189K 0.12 tolerated(0.19) benign(0.219) TCGA-50-5933-01 14 24897532 24897532 C T CBLN3 Missense_Mutation p.R127Q 0.22 tolerated(0.09) possibly_damaging(0.72) TCGA-50-5933-01 14 26917372 26917372 T A NOVA1 Missense_Mutation p.K439N 0.07 deleterious(0.03) probably_damaging(0.994) TCGA-50-5933-01 14 29237307 29237307 G T FOXG1 Silent p.R274R 0.20 TCGA-50-5933-01 14 29237327 29237327 G C FOXG1 Missense_Mutation p.R281P 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-50-5933-01 14 47120967 47120967 C A RPL10L 5'UTR 0.15 TCGA-50-5933-01 14 52188791 52188791 A T FRMD6 Silent p.G495G 0.23 TCGA-50-5933-01 14 52505683 52505683 G C NID2 Missense_Mutation p.T680R 0.15 deleterious(0) possibly_damaging(0.9) TCGA-50-5933-01 14 62199167 62199167 G T HIF1A Nonsense_Mutation p.E293* 0.10 TCGA-50-5933-01 14 64516501 64516501 G - SYNE2 Frame_Shift_Del p.S2517Tfs*20 0.09 TCGA-50-5933-01 14 90429941 90429941 G T TDP1 Silent p.G161G 0.15 TCGA-50-5933-01 14 90429942 90429942 A T TDP1 Missense_Mutation p.N162Y 0.13 deleterious(0) possibly_damaging(0.562) TCGA-50-5933-01 14 92491728 92491728 C T TRIP11 Missense_Mutation p.E80K 0.11 deleterious(0.01) possibly_damaging(0.803) TCGA-50-5933-01 14 94088672 94088672 C A UNC79 Missense_Mutation p.S1521Y 0.19 tolerated_low_confidence(0.15) benign(0.004) TCGA-50-5933-01 14 95562968 95562968 C A DICER1 Missense_Mutation p.R1430M 0.11 deleterious_low_confidence(0.04) possibly_damaging(0.779) TCGA-50-5933-01 15 22332768 22332768 C A RP11-69H14.6 RNA 0.09 TCGA-50-5933-01 15 24922632 24922632 A C NPAP1 Missense_Mutation p.T540P 0.16 tolerated(0.18) benign(0.034) TCGA-50-5933-01 15 32393544 32393544 G T CHRNA7 Silent p.L107L 0.16 TCGA-50-5933-01 15 35275448 35275448 G A ZNF770 Missense_Mutation p.T63I 0.10 deleterious(0) probably_damaging(0.966) TCGA-50-5933-01 15 41865602 41865602 G T TYRO3 Silent p.L694L 0.13 TCGA-50-5933-01 15 43901484 43901484 T A STRC Missense_Mutation p.R1183W 0.14 deleterious(0.01) probably_damaging(0.963) TCGA-50-5933-01 15 44097385 44097385 C T MFAP1 Silent p.E409E 0.10 TCGA-50-5933-01 15 69328113 69328113 C G NOX5 Missense_Mutation p.A342G 0.10 tolerated(0.36) benign(0.006) TCGA-50-5933-01 15 73552647 73552647 G T NEO1 Missense_Mutation p.V747L 0.17 deleterious(0) probably_damaging(0.956) TCGA-50-5933-01 15 73617434 73617434 C G HCN4 Missense_Mutation p.E614Q 0.09 deleterious(0) unknown(0) TCGA-50-5933-01 15 74709697 74709697 T G SEMA7A Missense_Mutation p.T214P 0.17 deleterious(0) probably_damaging(0.998) TCGA-50-5933-01 15 74709982 74709982 C A SEMA7A Missense_Mutation p.R167I 0.22 deleterious(0.01) benign(0.072) TCGA-50-5933-01 15 75586718 75586718 G A GOLGA6D Missense_Mutation p.V662M 0.06 tolerated(0.21) benign(0.043) TCGA-50-5933-01 15 76168549 76168549 C T UBE2Q2 Nonsense_Mutation p.Q204* 0.19 TCGA-50-5933-01 15 91835638 91835638 T C SV2B Silent p.F636F 0.11 TCGA-50-5933-01 16 19475097 19475097 G T TMC5 Splice_Site p.X413_splice 0.09 TCGA-50-5933-01 16 20380924 20380924 C A PDILT Missense_Mutation p.V336F 0.12 deleterious(0) probably_damaging(0.95) TCGA-50-5933-01 16 20554527 20554527 G A ACSM2B Missense_Mutation p.R447W 0.13 deleterious(0) probably_damaging(0.983) TCGA-50-5933-01 16 20566759 20566759 G T ACSM2B Missense_Mutation p.T143N 0.08 deleterious(0.04) benign(0.046) TCGA-50-5933-01 16 23718184 23718184 T A ERN2 Splice_Site p.X175_splice 0.20 TCGA-50-5933-01 16 2757372 2757372 G T KCTD5 3'UTR 0.11 TCGA-50-5933-01 16 29907150 29907150 T A SEZ6L2 Missense_Mutation p.E181D 0.14 deleterious(0.02) possibly_damaging(0.861) TCGA-50-5933-01 16 31234185 31234185 C A TRIM72 Missense_Mutation p.R260S 0.10 tolerated(0.26) possibly_damaging(0.574) TCGA-50-5933-01 16 31927756 31927756 C T ZNF267 Missense_Mutation p.S729L 0.13 deleterious(0.01) possibly_damaging(0.512) TCGA-50-5933-01 16 4847789 4847789 C T ROGDI Missense_Mutation p.V250M 0.08 deleterious(0.03) possibly_damaging(0.847) TCGA-50-5933-01 16 49433159 49433159 G T C16orf78 Silent p.V256V 0.17 TCGA-50-5933-01 16 51171014 51171014 C G SALL1 3'UTR 0.09 TCGA-50-5933-01 16 55730144 55730144 C A SLC6A2 Silent p.G385G 0.11 TCGA-50-5933-01 16 55844547 55844547 G T CES1 Silent p.A400A 0.10 TCGA-50-5933-01 16 57144694 57144694 G T CPNE2 Missense_Mutation p.A14S 0.11 tolerated(0.3) benign(0.364) TCGA-50-5933-01 16 65016031 65016031 T A CDH11 Missense_Mutation p.E391D 0.21 tolerated(0.25) probably_damaging(0.994) TCGA-50-5933-01 16 69377433 69377433 G A TMED6 Silent p.Y200Y 0.18 TCGA-50-5933-01 16 7382946 7382946 C A RBFOX1 5'UTR 0.28 TCGA-50-5933-01 16 739444 739444 C T WDR24 Missense_Mutation p.R66H 0.17 deleterious(0) probably_damaging(0.999) TCGA-50-5933-01 16 83711897 83711897 G T CDH13 Missense_Mutation p.G504C 0.20 tolerated(0.06) probably_damaging(1) TCGA-50-5933-01 17 10303865 10303865 C A MYH8 Missense_Mutation p.A1193S 0.15 tolerated(0.17) benign(0.032) TCGA-50-5933-01 17 21731274 21731274 C A UBBP4 Intron 0.13 TCGA-50-5933-01 17 21731278 21731278 G A UBBP4 Intron 0.08 TCGA-50-5933-01 17 27000440 27000440 C T SUPT6H Silent p.S7S 0.14 TCGA-50-5933-01 17 29631504 29631504 G T EVI2B Missense_Mutation p.P375Q 0.09 deleterious(0) probably_damaging(0.972) TCGA-50-5933-01 17 32905960 32905960 C G C17orf102 Missense_Mutation p.V114L 0.13 tolerated_low_confidence(0.3) possibly_damaging(0.621) TCGA-50-5933-01 17 35486404 35486404 T A ACACA Missense_Mutation p.H1944L 0.15 tolerated(0.08) benign(0.004) TCGA-50-5933-01 17 39316534 39316534 T G KRTAP4-4 Missense_Mutation p.Q137P 0.12 unknown(0) TCGA-50-5933-01 17 39324300 39324300 G T KRTAP4-3 Missense_Mutation p.P42H 0.15 deleterious(0) unknown(0) TCGA-50-5933-01 17 39594374 39594374 G T KRT38 Nonsense_Mutation p.Y404* 0.20 TCGA-50-5933-01 17 40359680 40359680 T C STAT5B Missense_Mutation p.D658G 0.10 deleterious(0) probably_damaging(0.987) TCGA-50-5933-01 17 40716788 40716788 G A COASY Missense_Mutation p.G399E 0.15 deleterious(0) probably_damaging(1) TCGA-50-5933-01 17 40835871 40835871 T C CNTNAP1 Missense_Mutation p.Y34H 0.21 tolerated(0.47) probably_damaging(0.998) TCGA-50-5933-01 17 41561531 41561531 G T DHX8 Missense_Mutation p.L42F 0.28 deleterious(0.04) unknown(0) TCGA-50-5933-01 17 4349456 4349456 C T SPNS3 Silent p.R172R 0.14 TCGA-50-5933-01 17 46628225 46628225 G T HOXB3 Nonsense_Mutation p.S256* 0.28 TCGA-50-5933-01 17 47778717 47778717 T A SLC35B1 3'UTR 0.29 TCGA-50-5933-01 17 51902186 51902187 - T KIF2B Frame_Shift_Ins p.E599* 0.23 TCGA-50-5933-01 17 57917156 57917156 G C VMP1 Missense_Mutation p.E369Q 0.09 tolerated(0.07) possibly_damaging(0.666) TCGA-50-5933-01 17 58786659 58786659 T C BCAS3 Silent p.S98S 0.33 TCGA-50-5933-01 17 62796792 62796792 G A PLEKHM1P RNA 0.17 TCGA-50-5933-01 17 66440705 66440705 G A WIPI1 Missense_Mutation p.S120F 0.09 deleterious(0) possibly_damaging(0.836) TCGA-50-5933-01 17 7164150 7164150 G A CLDN7 Silent p.F126F 0.16 TCGA-50-5933-01 17 72858840 72858840 C A FDXR 3'UTR 0.56 TCGA-50-5933-01 17 72954520 72954520 C T HID1 Missense_Mutation p.E432K 0.24 deleterious(0) probably_damaging(0.951) TCGA-50-5933-01 17 7324723 7324723 G T SPEM1 Silent p.L243L 0.28 TCGA-50-5933-01 17 73467940 73467940 C T KIAA0195 5'UTR 0.14 TCGA-50-5933-01 17 74473863 74473863 C T RHBDF2 Missense_Mutation p.R255H 0.14 deleterious(0.01) benign(0.045) TCGA-50-5933-01 17 7578290 7578290 C A TP53 Splice_Site p.X187_splice 0.26 TCGA-50-5933-01 17 7578457 7578457 C A TP53 Missense_Mutation p.R158L 0.07 deleterious(0) probably_damaging(0.986) TCGA-50-5933-01 17 7673701 7673701 C T DNAH2 Missense_Mutation p.A1358V 0.13 probably_damaging(0.992) TCGA-50-5933-01 17 80436675 80436675 G T NARF Splice_Site p.X174_splice 0.17 TCGA-50-5933-01 17 8047130 8047130 T G PER1 Silent p.S842S 0.08 TCGA-50-5933-01 18 12262964 12262964 G T CIDEA Missense_Mutation p.S60I 0.18 tolerated(0.1) possibly_damaging(0.845) TCGA-50-5933-01 18 13731883 13731883 A T RNMT Missense_Mutation p.T123S 0.13 tolerated(0.33) benign(0.004) TCGA-50-5933-01 18 196747 196747 C A USP14 Missense_Mutation p.Q192K 0.13 tolerated(0.26) benign(0.232) TCGA-50-5933-01 18 2913094 2913094 T A EMILIN2 Missense_Mutation p.Y952N 0.09 deleterious(0) probably_damaging(0.999) TCGA-50-5933-01 18 32954025 32954025 G A ZNF396 Missense_Mutation p.H78Y 0.13 tolerated(0.28) possibly_damaging(0.607) TCGA-50-5933-01 18 33751061 33751061 G C ELP2 Missense_Mutation p.W819C 0.09 deleterious(0) probably_damaging(0.999) TCGA-50-5933-01 18 34854503 34854503 C A CELF4 Intron 0.32 TCGA-50-5933-01 18 3534268 3534268 C T DLGAP1 Silent p.Q801Q 0.28 TCGA-50-5933-01 18 39570474 39570474 G T PIK3C3 Missense_Mutation p.V224F 0.14 tolerated(0.55) benign(0.019) TCGA-50-5933-01 18 43310394 43310394 T C SLC14A1 Missense_Mutation p.Y93H 0.14 deleterious(0.01) possibly_damaging(0.63) TCGA-50-5933-01 18 43310395 43310395 A T SLC14A1 Missense_Mutation p.Y93F 0.14 tolerated(0.11) benign(0.22) TCGA-50-5933-01 18 44561625 44561625 C T TCEB3B Missense_Mutation p.G4E 0.11 deleterious(0.01) probably_damaging(0.963) TCGA-50-5933-01 18 5434024 5434024 C T EPB41L3 Silent p.Q234Q 0.09 TCGA-50-5933-01 18 56033381 56033381 G T NEDD4L Missense_Mutation p.G662C 0.11 deleterious(0) probably_damaging(1) TCGA-50-5933-01 18 59855222 59855222 G T KIAA1468 Nonsense_Mutation p.G162* 0.33 TCGA-50-5933-01 18 59888679 59888679 G T KIAA1468 Missense_Mutation p.K269N 0.11 tolerated(0.22) benign(0.348) TCGA-50-5933-01 18 61645624 61645624 G A SERPINB8 Missense_Mutation p.V28I 0.24 tolerated(0.41) benign(0.104) TCGA-50-5933-01 18 77464788 77464788 G T CTDP1 Missense_Mutation p.G215C 0.09 deleterious(0) probably_damaging(1) TCGA-50-5933-01 19 1055931 1055931 G A ABCA7 Missense_Mutation p.E1411K 0.22 deleterious(0.03) possibly_damaging(0.772) TCGA-50-5933-01 19 15648395 15648395 C A CYP4F22 Silent p.R157R 0.17 TCGA-50-5933-01 19 17212808 17212808 G T MYO9B Missense_Mutation p.R94L 0.12 tolerated(0.14) possibly_damaging(0.872) TCGA-50-5933-01 19 17756920 17756920 A T UNC13A Missense_Mutation p.V682E 0.13 deleterious(0) probably_damaging(0.919) TCGA-50-5933-01 19 18499157 18499157 G C GDF15 Silent p.G113G 0.12 TCGA-50-5933-01 19 18729267 18729267 C T TMEM59L Silent p.L289L 0.20 TCGA-50-5933-01 19 20215049 20215049 G C ZNF90 Missense_Mutation p.G2A 0.09 deleterious(0.03) probably_damaging(0.998) TCGA-50-5933-01 19 22363427 22363427 G T ZNF676 Silent p.P364P 0.14 TCGA-50-5933-01 19 22940689 22940689 C G ZNF99 Missense_Mutation p.E674D 0.19 deleterious(0.03) probably_damaging(0.964) TCGA-50-5933-01 19 2410317 2410317 C T TMPRSS9 Silent p.A359A 0.15 TCGA-50-5933-01 19 30935819 30935819 C A ZNF536 Missense_Mutation p.S450R 0.26 deleterious(0.03) benign(0.046) TCGA-50-5933-01 19 30936301 30936301 G T ZNF536 Missense_Mutation p.G611V 0.11 deleterious(0.01) probably_damaging(0.941) TCGA-50-5933-01 19 31767930 31767930 G T TSHZ3 Silent p.I923I 0.09 TCGA-50-5933-01 19 31768285 31768285 G T TSHZ3 Nonsense_Mutation p.S805* 0.20 TCGA-50-5933-01 19 3433537 3433537 G C NFIC Missense_Mutation p.S219T 0.10 tolerated(0.05) benign(0.033) TCGA-50-5933-01 19 35769860 35769860 G T USF2 Silent p.G278G 0.24 TCGA-50-5933-01 19 35850521 35850521 G T FFAR3 Silent p.V243V 0.06 TCGA-50-5933-01 19 36230816 36230816 G A IGFLR1 Silent p.T172T 0.21 TCGA-50-5933-01 19 37676140 37676140 T A ZNF585B Missense_Mutation p.S767C 0.17 deleterious(0.01) benign(0.177) TCGA-50-5933-01 19 41447305 41447305 G T AC092071.1 5'Flank 0.09 TCGA-50-5933-01 19 41447306 41447306 A G AC092071.1 5'Flank 0.10 TCGA-50-5933-01 19 41622111 41622111 A T CYP2F1 Silent p.T6T 0.17 TCGA-50-5933-01 19 4231316 4231316 T A EBI3 Missense_Mutation p.Y66N 0.16 deleterious(0) probably_damaging(0.999) TCGA-50-5933-01 19 43679578 43679578 G A PSG5 Silent p.Y251Y 0.11 TCGA-50-5933-01 19 46270388 46270388 C G SIX5 Missense_Mutation p.E277Q 0.14 deleterious(0.01) possibly_damaging(0.76) TCGA-50-5933-01 19 48305217 48305217 G A TPRX1 Missense_Mutation p.P351S 0.22 tolerated_low_confidence(0.21) probably_damaging(0.932) TCGA-50-5933-01 19 50411625 50411625 C A NUP62 Silent p.A480A 0.12 TCGA-50-5933-01 19 51560016 51560016 G A KLK13 Missense_Mutation p.P221L 0.16 deleterious(0.02) probably_damaging(1) TCGA-50-5933-01 19 52132731 52132731 G T SIGLEC5 Missense_Mutation p.R194S 0.16 tolerated(0.48) benign(0.025) TCGA-50-5933-01 19 52538203 52538203 G T ZNF432 Silent p.S243S 0.15 TCGA-50-5933-01 19 52569171 52569171 C G ZNF841 Missense_Mutation p.C655S 0.12 deleterious(0) probably_damaging(1) TCGA-50-5933-01 19 52663757 52663757 C T ZNF836 Missense_Mutation p.D35N 0.15 deleterious(0.02) probably_damaging(0.989) TCGA-50-5933-01 19 52941164 52941164 A C ZNF534 Missense_Mutation p.S164R 0.17 tolerated(0.08) benign(0.193) TCGA-50-5933-01 19 53995126 53995126 G C ZNF813 Missense_Mutation p.G547A 0.28 deleterious(0.03) benign(0.422) TCGA-50-5933-01 19 56173908 56173908 G T U2AF2 Missense_Mutation p.G176V 0.08 tolerated(0.58) benign(0.003) TCGA-50-5933-01 19 56424218 56424218 C G NLRP13 Missense_Mutation p.R322P 0.17 tolerated(0.15) benign(0.061) TCGA-50-5933-01 19 57089368 57089368 T A ZNF470 Missense_Mutation p.L524H 0.20 deleterious(0) probably_damaging(0.999) TCGA-50-5933-01 19 8160275 8160275 A T FBN3 Missense_Mutation p.D1923E 0.10 deleterious(0.02) probably_damaging(0.991) TCGA-50-5933-01 19 9019982 9019982 C G MUC16 Intron 0.09 TCGA-50-5933-01 19 9064859 9064859 A T MUC16 Silent p.T7529T 0.18 TCGA-50-5933-01 19 9065531 9065531 G C MUC16 Silent p.T7305T 0.15 TCGA-50-5933-01 19 9088103 9088103 T C MUC16 Missense_Mutation p.T1238A 0.16 unknown(0) TCGA-50-5933-01 1 103428212 103428212 T A COL11A1 Silent p.A1007A 0.30 TCGA-50-5933-01 1 109743374 109743374 C T KIAA1324 Missense_Mutation p.S942F 0.15 deleterious(0) probably_damaging(1) TCGA-50-5933-01 1 111146070 111146070 C G KCNA2 Missense_Mutation p.K445N 0.13 tolerated_low_confidence(0.16) benign(0.011) TCGA-50-5933-01 1 111147160 111147160 C A KCNA2 Missense_Mutation p.R82L 0.13 deleterious(0) probably_damaging(0.994) TCGA-50-5933-01 1 111889256 111889256 C A PIFO 5'UTR 0.10 TCGA-50-5933-01 1 112524479 112524479 C A KCND3 Silent p.R290R 0.08 TCGA-50-5933-01 1 1148426 1148426 C G TNFRSF4 Missense_Mutation p.V106L 0.09 tolerated(0.06) benign(0.034) TCGA-50-5933-01 1 11589657 11589657 G A PTCHD2 Missense_Mutation p.R948H 0.12 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-50-5933-01 1 119962113 119962113 G T HSD3B2 Missense_Mutation p.C72F 0.25 deleterious(0) possibly_damaging(0.739) TCGA-50-5933-01 1 12853572 12853572 C A PRAMEF1 Missense_Mutation p.L66M 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-50-5933-01 1 149398967 149398967 G A HIST2H3PS2 3'Flank 0.11 TCGA-50-5933-01 1 150482265 150482265 C T ECM1 Intron 0.10 TCGA-50-5933-01 1 152285620 152285620 G T FLG Missense_Mutation p.T581N 0.20 possibly_damaging(0.782) TCGA-50-5933-01 1 152285768 152285768 G T FLG Missense_Mutation p.H532N 0.10 probably_damaging(0.913) TCGA-50-5933-01 1 152329306 152329306 G T FLG2 Nonsense_Mutation p.S319* 0.11 TCGA-50-5933-01 1 152733428 152733428 G A KPRP Missense_Mutation p.C455Y 0.24 deleterious(0.03) benign(0.146) TCGA-50-5933-01 1 153043164 153043164 T A SPRR2B Missense_Mutation p.Q51L 0.24 deleterious_low_confidence(0) unknown(0) TCGA-50-5933-01 1 153747848 153747848 C A SLC27A3 Missense_Mutation p.R6S 0.09 deleterious_low_confidence(0) unknown(0) TCGA-50-5933-01 1 154744828 154744828 G C KCNN3 Silent p.A357A 0.10 TCGA-50-5933-01 1 156554984 156554984 G C TTC24 Missense_Mutation p.A473P 0.06 tolerated_low_confidence(0.26) benign(0.004) TCGA-50-5933-01 1 156642540 156642540 C T NES Silent p.K480K 0.14 TCGA-50-5933-01 1 157803102 157803102 G T CD5L Missense_Mutation p.R307S 0.48 deleterious(0.03) possibly_damaging(0.755) TCGA-50-5933-01 1 158064446 158064446 G T KIRREL Missense_Mutation p.G604C 0.07 deleterious(0) probably_damaging(0.989) TCGA-50-5933-01 1 158325207 158325207 C A CD1E Missense_Mutation p.S158Y 0.23 deleterious(0.02) possibly_damaging(0.879) TCGA-50-5933-01 1 158736362 158736362 C A OR6N1 Missense_Mutation p.M37I 0.10 deleterious(0.04) benign(0) TCGA-50-5933-01 1 160654959 160654959 C T CD48 Missense_Mutation p.V35M 0.12 deleterious(0.04) benign(0.015) TCGA-50-5933-01 1 161681852 161681852 T A FCRLA Missense_Mutation p.Y233N 0.13 deleterious(0) probably_damaging(0.992) TCGA-50-5933-01 1 162724645 162724645 G T DDR2 Missense_Mutation p.Q139H 0.20 deleterious(0) probably_damaging(0.917) TCGA-50-5933-01 1 162724952 162724952 G A DDR2 Missense_Mutation p.D142N 0.09 deleterious(0.04) benign(0.143) TCGA-50-5933-01 1 165182967 165182967 G T LMX1A Missense_Mutation p.R194S 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-50-5933-01 1 165638193 165638193 C T ALDH9A1 Missense_Mutation p.D393N 0.09 tolerated(0.98) benign(0.008) TCGA-50-5933-01 1 168065747 168065747 T A GPR161 Silent p.T386T 0.09 TCGA-50-5933-01 1 168550551 168550551 C A XCL1 3'UTR 0.38 TCGA-50-5933-01 1 176668531 176668531 T G PAPPA2 Missense_Mutation p.D1014E 0.15 tolerated(0.72) benign(0.003) TCGA-50-5933-01 1 182635138 182635138 C A RGS8 Missense_Mutation p.W71C 0.24 deleterious(0) possibly_damaging(0.898) TCGA-50-5933-01 1 186077635 186077635 C T HMCN1 Missense_Mutation p.T3632I 0.29 possibly_damaging(0.751) TCGA-50-5933-01 1 19167002 19167002 G T TAS1R2 Silent p.A537A 0.10 TCGA-50-5933-01 1 19478267 19478267 T C UBR4 Missense_Mutation p.I2361M 0.17 benign(0.372) TCGA-50-5933-01 1 203186156 203186156 T A CHIT1 Missense_Mutation p.Q421L 0.17 tolerated(0.24) benign(0.345) TCGA-50-5933-01 1 20517691 20517691 C A UBXN10 Missense_Mutation p.R213S 0.09 deleterious(0.01) possibly_damaging(0.891) TCGA-50-5933-01 1 211848791 211848791 A G NEK2 Silent p.L11L 0.22 TCGA-50-5933-01 1 215802171 215802171 G T USH2A Silent p.G5168G 0.32 TCGA-50-5933-01 1 216173810 216173810 C A USH2A Missense_Mutation p.Q2140H 0.15 probably_damaging(0.97) TCGA-50-5933-01 1 216405371 216405371 G C USH2A Missense_Mutation p.Q973E 0.09 benign(0.102) TCGA-50-5933-01 1 216420237 216420237 G T USH2A Missense_Mutation p.N833K 0.11 benign(0.04) TCGA-50-5933-01 1 227081775 227081775 G - PSEN2 Frame_Shift_Del p.G381Afs*21 0.17 TCGA-50-5933-01 1 228004907 228004907 C G PRSS38 Intron 0.27 TCGA-50-5933-01 1 231472329 231472329 C T EXOC8 Missense_Mutation p.R388Q 0.10 deleterious(0.03) benign(0.036) TCGA-50-5933-01 1 236881160 236881160 C A ACTN2 Silent p.T43T 0.27 TCGA-50-5933-01 1 236899013 236899013 C A ACTN2 Missense_Mutation p.A259E 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-50-5933-01 1 237620007 237620007 C G RYR2 Silent p.S528S 0.14 TCGA-50-5933-01 1 237664013 237664013 T A RYR2 Missense_Mutation p.C736S 0.19 benign(0.382) TCGA-50-5933-01 1 237806676 237806676 G C RYR2 Missense_Mutation p.R2424T 0.12 probably_damaging(0.999) TCGA-50-5933-01 1 237817625 237817625 G T RYR2 Missense_Mutation p.G2626W 0.15 probably_damaging(0.999) TCGA-50-5933-01 1 240072465 240072465 C A CHRM3 Missense_Mutation p.Q572K 0.15 tolerated(1) possibly_damaging(0.53) TCGA-50-5933-01 1 243736348 243736348 C G AKT3 Silent p.L233L 0.05 TCGA-50-5933-01 1 247902226 247902227 - A OR14K1 Frame_Shift_Ins p.L104Hfs*16 0.13 TCGA-50-5933-01 1 248202135 248202135 C A OR2L2 Missense_Mutation p.T189K 0.13 tolerated(0.7) benign(0.102) TCGA-50-5933-01 1 248263100 248263100 G T OR2L13 Silent p.V141V 0.19 TCGA-50-5933-01 1 248367167 248367167 C A OR2M3 Silent p.R266R 0.10 TCGA-50-5933-01 1 31898241 31898241 G T SERINC2 Missense_Mutation p.G162C 0.26 deleterious(0) probably_damaging(1) TCGA-50-5933-01 1 32155450 32155450 A - COL16A1 Frame_Shift_Del p.D505Tfs*59 0.12 TCGA-50-5933-01 1 33133872 33133872 C A RBBP4 Silent p.I119I 0.14 TCGA-50-5933-01 1 34174722 34174722 C A CSMD2 Missense_Mutation p.R1141S 0.12 tolerated(0.08) benign(0.201) TCGA-50-5933-01 1 40131791 40131791 C A NT5C1A Nonsense_Mutation p.E85* 0.12 TCGA-50-5933-01 1 52901131 52901131 T A ZCCHC11 Missense_Mutation p.Q1390L 0.20 tolerated(0.05) benign(0.138) TCGA-50-5933-01 1 66075681 66075681 G T LEPR Missense_Mutation p.D602Y 0.26 deleterious(0) probably_damaging(0.928) TCGA-50-5933-01 1 6636489 6636489 C A TAS1R1 Silent p.I425I 0.09 TCGA-50-5933-01 1 68173365 68173365 G A GNG12 Missense_Mutation p.S2F 0.13 deleterious(0) benign(0.178) TCGA-50-5933-01 1 68659674 68659674 G T WLS Missense_Mutation p.Q113K 0.10 deleterious(0.04) benign(0.228) TCGA-50-5933-01 1 71512593 71512593 T C PTGER3 Missense_Mutation p.H223R 0.08 tolerated(0.48) benign(0.004) TCGA-50-5933-01 1 74801830 74801830 G C FPGT-TNNI3K Missense_Mutation p.D341H 0.19 deleterious(0) possibly_damaging(0.714) TCGA-50-5933-01 1 75037607 75037607 C T C1orf173 Missense_Mutation p.G1263R 0.09 tolerated(0.16) possibly_damaging(0.834) TCGA-50-5933-01 1 75038256 75038256 C G C1orf173 Missense_Mutation p.R1046S 0.16 tolerated(0.12) benign(0.019) TCGA-50-5933-01 1 75039035 75039035 C T C1orf173 Missense_Mutation p.D787N 0.14 tolerated(0.06) possibly_damaging(0.793) TCGA-50-5933-01 1 75204454 75204454 G A TYW3 Silent p.L112L 0.10 TCGA-50-5933-01 1 8074129 8074129 G C ERRFI1 Nonsense_Mutation p.S177* 0.14 TCGA-50-5933-01 1 82456781 82456781 A T LPHN2 Silent p.P1388P 0.09 TCGA-50-5933-01 1 8390452 8390452 G T SLC45A1 Missense_Mutation p.R300L 0.15 tolerated(0.13) benign(0.077) TCGA-50-5933-01 1 8424286 8424286 C - RERE Frame_Shift_Del p.E524Rfs*49 0.28 TCGA-50-5933-01 1 84650823 84650823 G T PRKACB Missense_Mutation p.G173V 0.26 deleterious(0) probably_damaging(0.998) TCGA-50-5933-01 1 8684419 8684419 G A RERE Missense_Mutation p.R116W 0.05 probably_damaging(0.986) TCGA-50-5933-01 1 89849285 89849285 C A GBP6 Silent p.A480A 0.27 TCGA-50-5933-01 1 97981341 97981341 G A DPYD Nonsense_Mutation p.R561* 0.09 TCGA-50-5933-01 20 30366632 30366632 G T TPX2 Missense_Mutation p.G300V 0.09 deleterious(0) probably_damaging(0.974) TCGA-50-5933-01 20 32162056 32162056 G T CBFA2T2 Missense_Mutation p.R17M 0.24 tolerated_low_confidence(0.07) benign(0.135) TCGA-50-5933-01 20 32210932 32210932 C T CBFA2T2 Silent p.P183P 0.10 TCGA-50-5933-01 20 35826893 35826893 G T RPN2 Nonsense_Mutation p.E101* 0.08 TCGA-50-5933-01 20 40045883 40045883 C G CHD6 Missense_Mutation p.Q2078H 0.08 tolerated(0.05) probably_damaging(0.998) TCGA-50-5933-01 20 43623806 43623806 T C STK4 Missense_Mutation p.Y201H 0.08 deleterious(0.01) probably_damaging(0.996) TCGA-50-5933-01 20 47604875 47604875 G T ARFGEF2 Missense_Mutation p.V771F 0.13 deleterious(0) probably_damaging(0.991) TCGA-50-5933-01 20 57829818 57829818 T A ZNF831 3'UTR 0.08 TCGA-50-5933-01 20 9459604 9459604 G C PLCB4 Missense_Mutation p.R1178P 0.19 tolerated_low_confidence(0.29) benign(0.395) TCGA-50-5933-01 20 9624939 9624939 C A PAK7 Missense_Mutation p.G13V 0.16 deleterious(0) probably_damaging(1) TCGA-50-5933-01 21 10969090 10969090 G T TPTE Nonsense_Mutation p.S53* 0.05 TCGA-50-5933-01 21 11098714 11098714 C A BAGE2 RNA 0.10 TCGA-50-5933-01 21 31744512 31744512 G T KRTAP13-2 Missense_Mutation p.S7Y 0.14 deleterious(0) probably_damaging(0.986) TCGA-50-5933-01 21 34923232 34923232 G T SON Silent p.S565S 0.19 TCGA-50-5933-01 22 31740992 31740992 G A PATZ1 Silent p.S199S 0.38 TCGA-50-5933-01 22 38369875 38369875 G T SOX10 Missense_Mutation p.P343H 0.20 tolerated(0.15) benign(0.004) TCGA-50-5933-01 22 38369876 38369876 G T SOX10 Missense_Mutation p.P343T 0.22 tolerated(0.32) benign(0.026) TCGA-50-5933-01 22 50902833 50902833 G A SBF1 Silent p.N558N 0.27 TCGA-50-5933-01 2 10136041 10136041 G T GRHL1 Missense_Mutation p.D512Y 0.11 deleterious(0) possibly_damaging(0.779) TCGA-50-5933-01 2 102818106 102818106 G T IL1RL2 Missense_Mutation p.A194S 0.13 tolerated(0.14) benign(0.059) TCGA-50-5933-01 2 103120017 103120017 G C SLC9A4 Silent p.G277G 0.08 TCGA-50-5933-01 2 105473326 105473327 GG T POU3F3 Frame_Shift_Del p.W453Ffs*12 0.14 TCGA-50-5933-01 2 107459724 107459724 C A ST6GAL2 Missense_Mutation p.R237L 0.33 benign(0.016) TCGA-50-5933-01 2 120714508 120714508 C T PTPN4 Missense_Mutation p.P690L 0.11 deleterious(0) probably_damaging(1) TCGA-50-5933-01 2 125204494 125204494 G T CNTNAP5 Missense_Mutation p.A300S 0.14 tolerated(0.45) benign(0.021) TCGA-50-5933-01 2 125530543 125530543 A T CNTNAP5 Missense_Mutation p.T900S 0.05 deleterious(0.01) benign(0.217) TCGA-50-5933-01 2 128346079 128346079 G T MYO7B Missense_Mutation p.K601N 0.14 tolerated(0.18) benign(0.366) TCGA-50-5933-01 2 133541158 133541158 G T NCKAP5 Missense_Mutation p.L1076M 0.09 deleterious(0.02) possibly_damaging(0.526) TCGA-50-5933-01 2 136562355 136562355 G - LCT Frame_Shift_Del p.A1483Pfs*7 0.14 TCGA-50-5933-01 2 137928454 137928454 G A THSD7B Missense_Mutation p.G557R 0.19 deleterious(0.02) probably_damaging(0.979) TCGA-50-5933-01 2 141083415 141083415 A G LRP1B Missense_Mutation p.Y4086H 0.14 benign(0.403) TCGA-50-5933-01 2 145157460 145157460 C A ZEB2 Missense_Mutation p.A432S 0.17 tolerated(0.71) benign(0.01) TCGA-50-5933-01 2 152301885 152301885 C A RIF1 Missense_Mutation p.H674N 0.09 deleterious(0) probably_damaging(0.999) TCGA-50-5933-01 2 155099310 155099310 T G GALNT13 Missense_Mutation p.L193R 0.10 deleterious(0) probably_damaging(0.974) TCGA-50-5933-01 2 155099313 155099313 G A GALNT13 Missense_Mutation p.R194Q 0.10 tolerated(0.59) benign(0.042) TCGA-50-5933-01 2 155158101 155158101 A C GALNT13 Silent p.P385P 0.08 TCGA-50-5933-01 2 155555778 155555778 T A KCNJ3 Missense_Mutation p.F164Y 0.10 deleterious(0) probably_damaging(0.998) TCGA-50-5933-01 2 162751275 162751275 C T SLC4A10 Silent p.L427L 0.15 TCGA-50-5933-01 2 1653320 1653320 G T PXDN Missense_Mutation p.H744Q 0.13 tolerated(0.32) benign(0.039) TCGA-50-5933-01 2 165365354 165365354 C A GRB14 Silent p.R275R 0.08 TCGA-50-5933-01 2 165987815 165987815 C T SCN3A Missense_Mutation p.S835N 0.10 deleterious(0.02) benign(0.124) TCGA-50-5933-01 2 166451702 166451702 T C CSRNP3 Missense_Mutation p.S43P 0.13 tolerated(0.32) probably_damaging(0.991) TCGA-50-5933-01 2 168114534 168114534 A T XIRP2 3'UTR 0.12 TCGA-50-5933-01 2 169780148 169780148 C G ABCB11 Missense_Mutation p.G1317A 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-50-5933-01 2 170097559 170097559 C A LRP2 Silent p.L1328L 0.11 TCGA-50-5933-01 2 179255873 179255873 G A OSBPL6 Missense_Mutation p.R817Q 0.20 deleterious(0) probably_damaging(0.994) TCGA-50-5933-01 2 179395788 179395788 G T TTN Missense_Mutation p.T35185N 0.11 TCGA-50-5933-01 2 179424097 179424097 C A TTN Missense_Mutation p.G28921V 0.05 TCGA-50-5933-01 2 179427802 179427802 A G TTN Missense_Mutation p.V27686A 0.10 TCGA-50-5933-01 2 179640673 179640673 G C TTN Missense_Mutation p.T1973S 0.09 TCGA-50-5933-01 2 187698752 187698752 G C ZSWIM2 Missense_Mutation p.T250S 0.11 tolerated(0.09) benign(0.219) TCGA-50-5933-01 2 192863879 192863879 C A TMEFF2 Missense_Mutation p.D198Y 0.04 deleterious(0) probably_damaging(0.977) TCGA-50-5933-01 2 207619756 207619756 C A MDH1B Missense_Mutation p.R296I 0.10 deleterious(0.01) possibly_damaging(0.61) TCGA-50-5933-01 2 209025704 209025704 G C CRYGA Missense_Mutation p.R117G 0.11 deleterious(0.01) possibly_damaging(0.661) TCGA-50-5933-01 2 209169637 209169637 C T PIKFYVE Silent p.A512A 0.09 TCGA-50-5933-01 2 215278951 215278951 C T VWC2L Silent p.L12L 0.13 TCGA-50-5933-01 2 219458847 219458847 A T RQCD1 Nonsense_Mutation p.R250* 0.07 TCGA-50-5933-01 2 219942058 219942058 G T NHEJ1 Silent p.S245S 0.07 TCGA-50-5933-01 2 238285757 238285757 T C COL6A3 Missense_Mutation p.T910A 0.13 possibly_damaging(0.714) TCGA-50-5933-01 2 240085557 240085557 C A HDAC4 Missense_Mutation p.A185S 0.20 tolerated(0.07) probably_damaging(0.997) TCGA-50-5933-01 2 242128053 242128053 G - ANO7 Frame_Shift_Del p.L11Sfs*13 0.29 TCGA-50-5933-01 2 24929509 24929509 C T NCOA1 Silent p.V390V 0.10 TCGA-50-5933-01 2 27360020 27360020 G T C2orf53 Missense_Mutation p.P393H 0.14 deleterious(0) benign(0.025) TCGA-50-5933-01 2 27501140 27501140 C T DNAJC5G Missense_Mutation p.P154S 0.15 tolerated(0.14) benign(0.026) TCGA-50-5933-01 2 31573033 31573033 C T XDH Silent p.R896R 0.11 TCGA-50-5933-01 2 49190968 49190968 G T FSHR Missense_Mutation p.T331N 0.07 tolerated(0.58) benign(0.001) TCGA-50-5933-01 2 50149280 50149280 G C NRXN1 Silent p.A1482A 0.11 TCGA-50-5933-01 2 675509 675509 C A TMEM18 Splice_Site p.X60_splice 0.16 TCGA-50-5933-01 2 70890466 70890466 C A ADD2 3'UTR 0.14 TCGA-50-5933-01 2 71361141 71361141 G T MPHOSPH10 Missense_Mutation p.D278Y 0.15 deleterious(0) possibly_damaging(0.853) TCGA-50-5933-01 2 89399386 89399386 G T IGKV1-16 Missense_Mutation p.A106E 0.10 deleterious(0.01) probably_damaging(0.983) TCGA-50-5933-01 2 89987023 89987023 C A IGKV2D-29 Silent p.R102R 0.09 TCGA-50-5933-01 3 112666767 112666767 C T CD200R1 Silent p.A24A 0.16 TCGA-50-5933-01 3 121208671 121208671 C T POLQ Missense_Mutation p.S1036N 0.06 tolerated_low_confidence(0.46) benign(0.008) TCGA-50-5933-01 3 121411320 121411320 C A GOLGB1 Missense_Mutation p.Q2297H 0.14 probably_damaging(0.952) TCGA-50-5933-01 3 121980463 121980463 C T CASR Missense_Mutation p.A194V 0.32 tolerated(0.93) probably_damaging(1) TCGA-50-5933-01 3 122432421 122432421 G T PARP14 Splice_Site p.X1257_splice 0.31 TCGA-50-5933-01 3 124066000 124066000 G A KALRN Nonsense_Mutation p.W551* 0.23 TCGA-50-5933-01 3 132063770 132063770 G C ACPP Splice_Site p.X217_splice 0.06 TCGA-50-5933-01 3 139096978 139096978 C G COPB2 Missense_Mutation p.V137L 0.25 tolerated(0.06) possibly_damaging(0.457) TCGA-50-5933-01 3 151055929 151055929 G A P2RY12 Silent p.N235N 0.17 TCGA-50-5933-01 3 151102898 151102898 C T MED12L Silent p.V1634V 0.11 TCGA-50-5933-01 3 15311335 15311335 T A SH3BP5 Missense_Mutation p.E127V 0.18 deleterious(0.02) probably_damaging(0.978) TCGA-50-5933-01 3 154055989 154055989 C T GPR149 Silent p.G565G 0.13 TCGA-50-5933-01 3 186504993 186504993 G T EIF4A2 Missense_Mutation p.R283S 0.27 deleterious(0.02) benign(0.059) TCGA-50-5933-01 3 2777972 2777973 - A CNTN4 Frame_Shift_Ins p.V46Sfs*6 0.17 TCGA-50-5933-01 3 2924927 2924927 G T CNTN4 Nonsense_Mutation p.G251* 0.13 TCGA-50-5933-01 3 30880603 30880603 C A GADL1 Silent p.G263G 0.18 TCGA-50-5933-01 3 37038135 37038135 C G MLH1 Missense_Mutation p.Q48E 0.12 deleterious(0) possibly_damaging(0.88) TCGA-50-5933-01 3 38760296 38760296 C A SCN10A Missense_Mutation p.D1177Y 0.27 deleterious(0.01) benign(0.009) TCGA-50-5933-01 3 38936142 38936142 G T SCN11A Missense_Mutation p.T906N 0.12 tolerated(0.62) benign(0.026) TCGA-50-5933-01 3 40503438 40503438 A G RPL14 Silent p.R121R 0.08 TCGA-50-5933-01 3 49928939 49928939 C T MST1R Missense_Mutation p.V1143M 0.24 deleterious(0) probably_damaging(0.957) TCGA-50-5933-01 3 52802407 52802407 G A NEK4 Silent p.L103L 0.08 TCGA-50-5933-01 3 75476723 75476723 C A FAM86DP RNA 0.13 TCGA-50-5933-01 3 89390204 89390204 C A EPHA3 Missense_Mutation p.P318Q 0.11 deleterious(0.04) benign(0.178) TCGA-50-5933-01 3 89391113 89391113 G T EPHA3 Silent p.T393T 0.25 TCGA-50-5933-01 3 9952837 9952837 G A IL17RE Silent p.L335L 0.11 TCGA-50-5933-01 3 9952838 9952838 C T IL17RE Missense_Mutation p.H336Y 0.11 deleterious(0) benign(0.179) TCGA-50-5933-01 4 100131611 100131611 G T ADH6 Missense_Mutation p.S104Y 0.11 tolerated(0.23) benign(0.037) TCGA-50-5933-01 4 109664984 109664984 G T ETNPPL Silent p.T444T 0.19 TCGA-50-5933-01 4 113436287 113436287 C A NEUROG2 Silent p.L115L 0.31 TCGA-50-5933-01 4 114275674 114275674 G C ANK2 Missense_Mutation p.G1967A 0.15 benign(0.105) TCGA-50-5933-01 4 122682991 122682991 G T TMEM155 Silent p.S16S 0.29 TCGA-50-5933-01 4 129192459 129192459 T A PGRMC2 3'UTR 0.17 TCGA-50-5933-01 4 129192460 129192460 G A PGRMC2 3'UTR 0.16 TCGA-50-5933-01 4 138451195 138451195 A T PCDH18 Missense_Mutation p.V683E 0.29 tolerated(0.34) benign(0.028) TCGA-50-5933-01 4 1389358 1389358 G T CRIPAK Silent p.L353L 0.13 TCGA-50-5933-01 4 143081565 143081565 C T INPP4B Silent p.V503V 0.14 TCGA-50-5933-01 4 153253847 153253847 G A FBXW7 Silent p.L296L 0.09 TCGA-50-5933-01 4 158142240 158142240 T A GRIA2 Missense_Mutation p.W16R 0.11 deleterious_low_confidence(0.01) benign(0.377) TCGA-50-5933-01 4 164271912 164271912 G T NPY5R Missense_Mutation p.V163F 0.27 deleterious(0.01) possibly_damaging(0.784) TCGA-50-5933-01 4 164394505 164394505 G C TKTL2 Missense_Mutation p.Q128E 0.14 deleterious(0) possibly_damaging(0.849) TCGA-50-5933-01 4 183522218 183522218 C A TENM3 Missense_Mutation p.P218Q 0.12 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-50-5933-01 4 187558005 187558005 G A FAT1 Missense_Mutation p.L1236F 0.11 probably_damaging(0.997) TCGA-50-5933-01 4 189026059 189026059 A C TRIML2 Missense_Mutation p.S23A 0.09 deleterious(0) benign(0.047) TCGA-50-5933-01 4 20619120 20619120 G A SLIT2 Missense_Mutation p.E1399K 0.16 tolerated(0.21) benign(0.021) TCGA-50-5933-01 4 23816048 23816048 T A PPARGC1A Missense_Mutation p.E353V 0.13 deleterious(0) probably_damaging(0.999) TCGA-50-5933-01 4 27019384 27019384 G T STIM2 Missense_Mutation p.R522L 0.15 deleterious(0.02) probably_damaging(0.994) TCGA-50-5933-01 4 38777210 38777210 A G TLR10 Translation_Start_Site p.M1? 0.20 deleterious(0) benign(0.079) TCGA-50-5933-01 4 419845 419845 C A ABCA11P RNA 0.17 TCGA-50-5933-01 4 48512111 48512111 C T FRYL Missense_Mutation p.D2787N 0.11 deleterious(0) probably_damaging(0.996) TCGA-50-5933-01 4 62862036 62862036 C T LPHN3 Silent p.F1020F 0.11 TCGA-50-5933-01 4 62894601 62894601 T A LPHN3 Splice_Site p.X1073_splice 0.13 TCGA-50-5933-01 4 6695620 6695620 T A S100P 5'UTR 0.15 TCGA-50-5933-01 4 69795752 69795752 G T UGT2A3 Missense_Mutation p.L455I 0.14 deleterious(0) probably_damaging(0.951) TCGA-50-5933-01 4 69817245 69817245 A G UGT2A3 Silent p.H78H 0.11 TCGA-50-5933-01 4 70152549 70152549 C A UGT2B28 Missense_Mutation p.T317K 0.10 deleterious(0.05) benign(0.007) TCGA-50-5933-01 4 70810648 70810648 C - CSN1S1 Frame_Shift_Del p.P162Hfs*33 0.14 TCGA-50-5933-01 4 71275358 71275358 C A PROL1 Missense_Mutation p.L105I 0.15 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-50-5933-01 4 73984548 73984548 G A ANKRD17 Missense_Mutation p.R1349C 0.13 possibly_damaging(0.848) TCGA-50-5933-01 4 77231140 77231140 G T FAM47E-STBD1 Missense_Mutation p.W355L 0.17 deleterious(0) probably_damaging(0.999) TCGA-50-5933-01 4 84374799 84374799 C A HELQ Missense_Mutation p.Q199H 0.23 deleterious(0) probably_damaging(0.995) TCGA-50-5933-01 4 89018658 89018658 T A ABCG2 Missense_Mutation p.S532C 0.24 deleterious(0) probably_damaging(0.926) TCGA-50-5933-01 5 10239183 10239183 C A FAM173B Missense_Mutation p.R101L 0.12 deleterious(0) probably_damaging(0.995) TCGA-50-5933-01 5 108516501 108516501 G A FER Missense_Mutation p.S701N 0.22 deleterious(0) probably_damaging(0.996) TCGA-50-5933-01 5 11411693 11411693 G T CTNND2 Missense_Mutation p.Q132K 0.12 tolerated(0.3) benign(0.23) TCGA-50-5933-01 5 118500202 118500202 G T DMXL1 Missense_Mutation p.G1568V 0.21 deleterious(0) probably_damaging(1) TCGA-50-5933-01 5 126769092 126769092 G A MEGF10 Nonsense_Mutation p.W577* 0.17 TCGA-50-5933-01 5 132097248 132097248 G A SEPT8 Silent p.L288L 0.19 TCGA-50-5933-01 5 140167035 140167035 G T PCDHA1 Missense_Mutation p.C387F 0.27 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-50-5933-01 5 140188946 140188946 C T PCDHA4 Missense_Mutation p.A725V 0.28 tolerated_low_confidence(0.08) benign(0.015) TCGA-50-5933-01 5 140250613 140250613 C G PCDHA11 Missense_Mutation p.P642R 0.31 deleterious_low_confidence(0) possibly_damaging(0.652) TCGA-50-5933-01 5 140515678 140515678 C A PCDHB5 Missense_Mutation p.P221H 0.14 deleterious_low_confidence(0) possibly_damaging(0.616) TCGA-50-5933-01 5 140515852 140515852 A G PCDHB5 Missense_Mutation p.Y279C 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-50-5933-01 5 140531098 140531098 G A PCDHB6 Silent p.T420T 0.10 TCGA-50-5933-01 5 143545042 143545042 C A YIPF5 Missense_Mutation p.Q79H 0.15 tolerated(0.2) benign(0.002) TCGA-50-5933-01 5 149216164 149216164 G T PPARGC1B Missense_Mutation p.G716W 0.22 deleterious(0) probably_damaging(0.977) TCGA-50-5933-01 5 150945458 150945458 G T FAT2 Missense_Mutation p.T1012N 0.15 possibly_damaging(0.756) TCGA-50-5933-01 5 15928432 15928432 G T FBXL7 Missense_Mutation p.M187I 0.13 tolerated(0.29) benign(0.003) TCGA-50-5933-01 5 15935347 15935347 C T FBXL7 Intron 0.11 TCGA-50-5933-01 5 169129310 169129310 A T DOCK2 Missense_Mutation p.D421V 0.09 deleterious(0) probably_damaging(0.928) TCGA-50-5933-01 5 180046339 180046339 G A FLT4 Missense_Mutation p.A892V 0.19 deleterious(0) probably_damaging(0.999) TCGA-50-5933-01 5 19520818 19520818 T G CDH18 Missense_Mutation p.E487A 0.08 deleterious(0.01) benign(0.053) TCGA-50-5933-01 5 23526942 23526942 G T PRDM9 Missense_Mutation p.C582F 0.31 deleterious(0.02) probably_damaging(1) TCGA-50-5933-01 5 33938220 33938220 C T RXFP3 Missense_Mutation p.R459C 0.14 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-50-5933-01 5 39134992 39134992 T A FYB Missense_Mutation p.E557V 0.37 deleterious(0) probably_damaging(1) TCGA-50-5933-01 5 43174960 43174960 G A ZNF131 Missense_Mutation p.E499K 0.12 deleterious(0) probably_damaging(0.941) TCGA-50-5933-01 5 52377468 52377468 G T ITGA2 Missense_Mutation p.G1029V 0.21 deleterious(0.01) probably_damaging(0.947) TCGA-50-5933-01 5 58271612 58271612 G A PDE4D Nonsense_Mutation p.Q629* 0.11 TCGA-50-5933-01 5 63256706 63256706 C T HTR1A Missense_Mutation p.V281M 0.21 tolerated(0.15) possibly_damaging(0.502) TCGA-50-5933-01 5 63256880 63256880 G A HTR1A Missense_Mutation p.R223C 0.28 deleterious(0) probably_damaging(0.998) TCGA-50-5933-01 5 72201204 72201204 A G TNPO1 Silent p.L888L 0.14 TCGA-50-5933-01 5 79378216 79378216 G T THBS4 Intron 0.21 TCGA-50-5933-01 5 79473158 79473158 C A SERINC5 Missense_Mutation p.D146Y 0.21 deleterious(0) probably_damaging(0.992) TCGA-50-5933-01 6 107955303 107955303 G A SOBP Missense_Mutation p.A419T 0.11 tolerated(0.05) possibly_damaging(0.566) TCGA-50-5933-01 6 108042097 108042097 C A SCML4 Missense_Mutation p.L261F 0.09 tolerated(0.27) benign(0.008) TCGA-50-5933-01 6 110746219 110746219 G T SLC22A16 Silent p.R531R 0.19 TCGA-50-5933-01 6 118880304 118880304 T A PLN 3'UTR 0.17 TCGA-50-5933-01 6 125144412 125144412 C A NKAIN2 3'UTR 0.11 TCGA-50-5933-01 6 126298798 126298798 C T HINT3 Silent p.H175H 0.11 TCGA-50-5933-01 6 131216229 131216229 C A EPB41L2 Missense_Mutation p.V423L 0.12 deleterious(0) probably_damaging(0.968) TCGA-50-5933-01 6 133849880 133849880 G T EYA4 Missense_Mutation p.W619C 0.12 deleterious(0) probably_damaging(0.998) TCGA-50-5933-01 6 138629992 138629992 G T KIAA1244 Nonsense_Mutation p.G1364* 0.08 TCGA-50-5933-01 6 142736158 142736158 C G GPR126 Missense_Mutation p.T865S 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-50-5933-01 6 144745141 144745141 G T UTRN Missense_Mutation p.G111V 0.11 deleterious(0) probably_damaging(1) TCGA-50-5933-01 6 149959680 149959680 T C KATNA1 Missense_Mutation p.S2G 0.14 deleterious(0.05) probably_damaging(0.978) TCGA-50-5933-01 6 152466647 152466647 T C SYNE1 Intron 0.09 TCGA-50-5933-01 6 152527394 152527394 A C SYNE1 Missense_Mutation p.L7643W 0.16 probably_damaging(0.999) TCGA-50-5933-01 6 152748945 152748945 C G SYNE1 Missense_Mutation p.E1661D 0.25 probably_damaging(0.991) TCGA-50-5933-01 6 152774700 152774700 C T SYNE1 Intron 0.17 TCGA-50-5933-01 6 161012107 161012107 T A LPA Missense_Mutation p.N1219I 0.11 deleterious(0) probably_damaging(1) TCGA-50-5933-01 6 161135904 161135904 G T PLG Missense_Mutation p.W209L 0.12 deleterious(0) probably_damaging(0.998) TCGA-50-5933-01 6 169637732 169637732 A C THBS2 Missense_Mutation p.C430G 0.10 deleterious(0) probably_damaging(0.978) TCGA-50-5933-01 6 18207730 18207730 A G KDM1B Silent p.A355A 0.24 TCGA-50-5933-01 6 24566863 24566863 A T KIAA0319 Missense_Mutation p.Y752N 0.08 deleterious(0) probably_damaging(0.978) TCGA-50-5933-01 6 28121316 28121316 G A ZKSCAN8 Missense_Mutation p.G420S 0.47 tolerated(1) possibly_damaging(0.828) TCGA-50-5933-01 6 29054770 29054770 C A OR2B3 Missense_Mutation p.G86C 0.40 tolerated(0.25) benign(0.001) TCGA-50-5933-01 6 29142069 29142069 T G OR2J2 Nonsense_Mutation p.Y219* 0.12 TCGA-50-5933-01 6 32116988 32116988 C G PRRT1 3'UTR 0.19 TCGA-50-5933-01 6 34835154 34835154 C T UHRF1BP1 Missense_Mutation p.P1189S 0.11 tolerated(0.75) benign(0.001) TCGA-50-5933-01 6 36269754 36269754 C G PNPLA1 Missense_Mutation p.R298G 0.11 deleterious(0.02) benign(0.033) TCGA-50-5933-01 6 38820518 38820518 G - DNAH8 Frame_Shift_Del p.A1622Qfs*38 0.24 TCGA-50-5933-01 6 41127558 41127558 C A TREM2 Missense_Mutation p.D152Y 0.12 deleterious(0.03) possibly_damaging(0.646) TCGA-50-5933-01 6 41774568 41774568 C T USP49 Missense_Mutation p.D52N 0.06 deleterious(0) benign(0.008) TCGA-50-5933-01 6 43267156 43267156 T A SLC22A7 Missense_Mutation p.L143Q 0.05 deleterious(0.02) probably_damaging(0.982) TCGA-50-5933-01 6 43322931 43322931 T A ZNF318 Missense_Mutation p.K714M 0.20 probably_damaging(0.993) TCGA-50-5933-01 6 43498531 43498531 T A XPO5 Missense_Mutation p.M858L 0.18 tolerated(1) benign(0.004) TCGA-50-5933-01 6 43604373 43604375 CTT - MAD2L1BP In_Frame_Del p.S134del 0.13 TCGA-50-5933-01 6 49412407 49412407 C A MUT Missense_Mutation p.A541S 0.10 deleterious_low_confidence(0.01) benign(0.363) TCGA-50-5933-01 6 49582494 49582494 C A RHAG Missense_Mutation p.R238M 0.14 deleterious(0.03) benign(0.059) TCGA-50-5933-01 6 51907900 51907900 C A PKHD1 Nonsense_Mutation p.G952* 0.14 TCGA-50-5933-01 6 56373386 56373386 C A DST Missense_Mutation p.D3771Y 0.24 possibly_damaging(0.894) TCGA-50-5933-01 6 75839938 75839938 C A COL12A1 Nonsense_Mutation p.G2027* 0.26 TCGA-50-5933-01 6 87970078 87970078 G T ZNF292 Missense_Mutation p.G2244V 0.13 tolerated(0.28) possibly_damaging(0.638) TCGA-50-5933-01 6 90361967 90361967 C T MDN1 Missense_Mutation p.E5287K 0.16 unknown(0) TCGA-50-5933-01 6 97677061 97677061 T A MMS22L Missense_Mutation p.Q583L 0.16 deleterious(0) benign(0.367) TCGA-50-5933-01 6 9897176 9897176 A T OFCC1 Intron 0.53 TCGA-50-5933-01 7 100676084 100676084 C A MUC17 Missense_Mutation p.P463T 0.17 possibly_damaging(0.814) TCGA-50-5933-01 7 100684682 100684682 A T MUC17 Missense_Mutation p.S3329C 0.13 probably_damaging(0.965) TCGA-50-5933-01 7 103767298 103767298 C A ORC5 Missense_Mutation p.L435F 0.17 tolerated(0.07) possibly_damaging(0.857) TCGA-50-5933-01 7 116339431 116339431 G T MET Missense_Mutation p.C98F 0.11 deleterious(0) probably_damaging(0.999) TCGA-50-5933-01 7 117024854 117024854 C T ASZ1 Missense_Mutation p.G205R 0.26 deleterious(0) probably_damaging(0.999) TCGA-50-5933-01 7 120906829 120906829 A G CPED1 Missense_Mutation p.N867S 0.13 deleterious(0.02) benign(0.362) TCGA-50-5933-01 7 123516883 123516883 G A HYAL4 Missense_Mutation p.E374K 0.12 tolerated(0.52) probably_damaging(0.99) TCGA-50-5933-01 7 126746619 126746619 T A GRM8 Missense_Mutation p.T220S 0.08 deleterious(0) possibly_damaging(0.645) TCGA-50-5933-01 7 134896260 134896260 C G WDR91 5'UTR 0.16 TCGA-50-5933-01 7 135418761 135418761 C T FAM180A Missense_Mutation p.D162N 0.12 deleterious(0) probably_damaging(0.999) TCGA-50-5933-01 7 136700873 136700873 G T CHRM2 Missense_Mutation p.V421L 0.23 tolerated(1) benign(0.123) TCGA-50-5933-01 7 139661722 139661722 G A TBXAS1 Missense_Mutation p.R322Q 0.11 deleterious(0.02) possibly_damaging(0.477) TCGA-50-5933-01 7 142379068 142379068 C G MTRNR2L6 3'Flank 0.16 TCGA-50-5933-01 7 142459766 142459766 C A PRSS1 Silent p.S114S 0.13 TCGA-50-5933-01 7 142499641 142499641 C A TRBC2 Silent p.T134T 0.08 TCGA-50-5933-01 7 142564038 142564038 G T EPHB6 Missense_Mutation p.A476S 0.13 tolerated(0.51) benign(0.146) TCGA-50-5933-01 7 143748389 143748389 G C OR2A5 Missense_Mutation p.G299R 0.09 deleterious(0.02) benign(0.114) TCGA-50-5933-01 7 146997243 146997243 G C CNTNAP2 Missense_Mutation p.L453F 0.08 deleterious(0) probably_damaging(0.991) TCGA-50-5933-01 7 148484115 148484115 T G CUL1 Missense_Mutation p.V461G 0.12 deleterious(0) probably_damaging(0.988) TCGA-50-5933-01 7 149483226 149483226 C A SSPO RNA 0.16 TCGA-50-5933-01 7 16666776 16666776 C A ANKMY2 Missense_Mutation p.A54S 0.27 deleterious(0) possibly_damaging(0.872) TCGA-50-5933-01 7 16745808 16745808 G T BZW2 3'UTR 0.23 TCGA-50-5933-01 7 19184913 19184913 G T FERD3L Missense_Mutation p.P25T 0.07 deleterious(0.05) possibly_damaging(0.548) TCGA-50-5933-01 7 23383458 23383458 G T IGF2BP3 Missense_Mutation p.T319K 0.22 deleterious(0) possibly_damaging(0.862) TCGA-50-5933-01 7 29111439 29111439 G T CPVL Missense_Mutation p.H272N 0.38 tolerated(0.38) benign(0) TCGA-50-5933-01 7 31683245 31683245 C A CCDC129 Missense_Mutation p.A780E 0.07 tolerated(0.44) benign(0.093) TCGA-50-5933-01 7 34888198 34888198 G T NPSR1 Missense_Mutation p.Q316H 0.39 deleterious(0) probably_damaging(0.994) TCGA-50-5933-01 7 53103646 53103646 C T POM121L12 Silent p.S94S 0.31 TCGA-50-5933-01 7 55242489 55242489 G T EGFR Silent p.P753P 0.35 TCGA-50-5933-01 7 6631427 6631427 G T C7orf26 Nonsense_Mutation p.G115* 0.15 TCGA-50-5933-01 7 73811540 73811540 C A CLIP2 Missense_Mutation p.L953M 0.19 tolerated(0.22) probably_damaging(0.999) TCGA-50-5933-01 7 76631612 76631612 C T UPK3B Intron 0.22 TCGA-50-5933-01 7 82785355 82785355 C A PCLO Missense_Mutation p.G201V 0.14 unknown(0) TCGA-50-5933-01 7 87074240 87074240 A T ABCB4 Missense_Mutation p.C353S 0.24 tolerated(0.65) benign(0.002) TCGA-50-5933-01 7 91708554 91708554 G A AKAP9 Silent p.K2369K 0.12 TCGA-50-5933-01 7 92731109 92731109 T C SAMD9 Silent p.L1434L 0.14 TCGA-50-5933-01 8 10465553 10465553 C A RP1L1 Nonsense_Mutation p.E2019* 0.14 TCGA-50-5933-01 8 104987714 104987715 - A RIMS2 Frame_Shift_Ins p.S970Kfs*25 0.16 TCGA-50-5933-01 8 105361289 105361289 C A DCSTAMP Missense_Mutation p.T170N 0.14 tolerated(0.07) benign(0.266) TCGA-50-5933-01 8 113241022 113241022 T G CSMD3 Missense_Mutation p.I3643L 0.22 deleterious(0) benign(0.218) TCGA-50-5933-01 8 11606472 11606472 G T GATA4 Missense_Mutation p.G221W 0.21 deleterious(0) probably_damaging(1) TCGA-50-5933-01 8 124664263 124664263 C A KLHL38 Missense_Mutation p.V302F 0.26 deleterious(0) probably_damaging(0.957) TCGA-50-5933-01 8 124975546 124975546 G T FER1L6 Missense_Mutation p.Q35H 0.10 tolerated_low_confidence(0.26) benign(0.004) TCGA-50-5933-01 8 139163668 139163668 G T FAM135B Missense_Mutation p.A1017E 0.19 tolerated(0.14) benign(0.019) TCGA-50-5933-01 8 145135259 145135259 G A EXOSC4 Missense_Mutation p.V165M 0.11 tolerated(0.07) benign(0.097) TCGA-50-5933-01 8 145773606 145773606 C T ARHGAP39 Silent p.L288L 0.21 TCGA-50-5933-01 8 24168942 24168942 G C ADAM28 Missense_Mutation p.R125S 0.11 tolerated(0.61) benign(0.038) TCGA-50-5933-01 8 30701025 30701025 T C TEX15 Missense_Mutation p.N1837D 0.21 tolerated(0.17) benign(0) TCGA-50-5933-01 8 49832731 49832731 G T SNAI2 Missense_Mutation p.L117I 0.24 tolerated(0.2) benign(0.201) TCGA-50-5933-01 8 52366151 52366151 G A PXDNL Missense_Mutation p.H393Y 0.15 tolerated(0.06) possibly_damaging(0.861) TCGA-50-5933-01 8 53853210 53853210 G T NPBWR1 Missense_Mutation p.R248L 0.15 deleterious(0) possibly_damaging(0.81) TCGA-50-5933-01 8 55541388 55541388 G T RP1 Missense_Mutation p.G1649V 0.17 tolerated(0.06) possibly_damaging(0.839) TCGA-50-5933-01 8 73849102 73849102 C A KCNB2 Silent p.S504S 0.05 TCGA-50-5933-01 8 76456055 76456055 C T HNF4G Missense_Mutation p.A33V 0.09 tolerated(0.45) benign(0.001) TCGA-50-5933-01 8 77618677 77618677 A T ZFHX4 Missense_Mutation p.H785L 0.12 benign(0.402) TCGA-50-5933-01 8 80679499 80679499 G A HEY1 Silent p.S40S 0.24 TCGA-50-5933-01 8 81577099 81577099 C A ZNF704 Missense_Mutation p.R293L 0.04 deleterious(0.01) possibly_damaging(0.656) TCGA-50-5933-01 8 8998956 8998956 T C PPP1R3B Missense_Mutation p.Q69R 0.14 tolerated(0.38) benign(0.001) TCGA-50-5933-01 8 92346639 92346639 G A SLC26A7 Silent p.R253R 0.21 TCGA-50-5933-01 8 99440308 99440308 C A KCNS2 Missense_Mutation p.T34K 0.38 deleterious(0) probably_damaging(0.998) TCGA-50-5933-01 9 120475175 120475175 C T TLR4 Missense_Mutation p.R257C 0.19 deleterious(0) probably_damaging(0.929) TCGA-50-5933-01 9 120476002 120476002 C A TLR4 Missense_Mutation p.F532L 0.14 tolerated(1) benign(0.004) TCGA-50-5933-01 9 134103703 134103703 G T NUP214 Missense_Mutation p.S2020I 0.16 possibly_damaging(0.883) TCGA-50-5933-01 9 136384029 136384029 G T TMEM8C Silent p.I122I 0.19 TCGA-50-5933-01 9 137630626 137630626 C A COL5A1 Missense_Mutation p.T489N 0.19 possibly_damaging(0.908) TCGA-50-5933-01 9 16552658 16552658 T A BNC2 Missense_Mutation p.Q180L 0.18 deleterious(0) probably_damaging(0.991) TCGA-50-5933-01 9 43625106 43625106 C T SPATA31A6 Missense_Mutation p.C1194Y 0.12 tolerated(0.59) benign(0.004) TCGA-50-5933-01 9 6252962 6252962 T A IL33 Missense_Mutation p.V147D 0.22 deleterious(0) probably_damaging(0.967) TCGA-50-5933-01 9 6328769 6328769 G T TPD52L3 Silent p.G58G 0.15 TCGA-50-5933-01 9 79634849 79634849 C T FOXB2 Silent p.C93C 0.22 TCGA-50-5933-01 9 86293365 86293365 T A UBQLN1 Silent p.A287A 0.10 TCGA-50-5933-01 9 91940394 91940394 C T SECISBP2 Nonsense_Mutation p.Q79* 0.16 TCGA-50-5933-01 9 95599576 95599576 C A ANKRD19P RNA 0.24 TCGA-50-5933-01 X 101395808 101395808 G T TCEAL6 Missense_Mutation p.Q166K 0.21 deleterious(0.01) possibly_damaging(0.767) TCGA-50-5933-01 X 102864488 102864488 C A TCEAL3 Missense_Mutation p.Q166K 0.04 deleterious(0.03) possibly_damaging(0.893) TCGA-50-5933-01 X 110497517 110497517 C T CAPN6 Missense_Mutation p.E94K 0.27 tolerated(0.68) possibly_damaging(0.874) TCGA-50-5933-01 X 119293138 119293138 C A RHOXF2 Silent p.G99G 0.26 TCGA-50-5933-01 X 127185254 127185254 T A ACTRT1 Missense_Mutation p.E311V 0.30 tolerated(0.14) probably_damaging(0.937) TCGA-50-5933-01 X 138724720 138724720 G T MCF2 Intron 0.07 TCGA-50-5933-01 X 142716539 142716539 C A SLITRK4 Missense_Mutation p.G796C 0.21 tolerated(0.2) probably_damaging(1) TCGA-50-5933-01 X 144905684 144905684 A T SLITRK2 Missense_Mutation p.S581C 0.22 tolerated(0.19) benign(0.264) TCGA-50-5933-01 X 148798362 148798362 G A MAGEA11 Missense_Mutation p.A406T 0.20 deleterious(0) benign(0.379) TCGA-50-5933-01 X 150349228 150349228 A G GPR50 Silent p.R391R 0.23 TCGA-50-5933-01 X 151900601 151900601 C A MAGEA12 Missense_Mutation p.G67V 0.35 tolerated(0.27) possibly_damaging(0.566) TCGA-50-5933-01 X 152818719 152818719 C A ATP2B3 Silent p.R684R 0.55 TCGA-50-5933-01 X 3002690 3002690 G T ARSF Silent p.A271A 0.31 TCGA-50-5933-01 X 32398634 32398634 C G DMD Missense_Mutation p.W1613S 0.20 possibly_damaging(0.607) TCGA-50-5933-01 X 41203341 41203341 C T DDX3X Missense_Mutation p.T275M 0.32 deleterious(0) probably_damaging(1) TCGA-50-5933-01 X 54783745 54783745 G T ITIH6 Missense_Mutation p.S921Y 0.22 deleterious(0.03) possibly_damaging(0.671) TCGA-50-5933-01 X 55513497 55513497 C A USP51 Missense_Mutation p.A626S 0.41 tolerated(0.85) benign(0.032) TCGA-50-5933-01 X 69828958 69828958 T G TEX11 Missense_Mutation p.Q636P 0.32 deleterious(0.01) benign(0.242) TCGA-50-5933-01 X 78216858 78216858 C G P2RY10 Missense_Mutation p.R281G 0.20 tolerated(0.12) benign(0.112) TCGA-50-5933-01 X 78216859 78216859 G A P2RY10 Missense_Mutation p.R281Q 0.20 tolerated(0.41) benign(0.001) TCGA-50-5933-01 X 80001181 80001181 G T BRWD3 Missense_Mutation p.H160N 0.18 tolerated(0.3) benign(0.005) TCGA-50-5933-01 X 83128653 83128653 G T CYLC1 Missense_Mutation p.V313F 0.14 tolerated(0.05) unknown(0) TCGA-50-5933-01 X 83129210 83129210 C A CYLC1 Missense_Mutation p.H498Q 0.50 tolerated(0.54) benign(0.002) TCGA-50-5933-01 X 83129211 83129211 T C CYLC1 Missense_Mutation p.S499P 0.50 tolerated(0.15) probably_damaging(0.986) TCGA-50-5933-01 X 86890577 86890578 - T KLHL4 Frame_Shift_Ins p.G577Wfs*3 0.34 TCGA-50-5933-01 X 91133849 91133849 G T PCDH11X Missense_Mutation p.K870N 0.54 tolerated(0.08) probably_damaging(1) TCGA-50-5933-01 X 91134054 91134054 T C PCDH11X Missense_Mutation p.Y939H 0.49 deleterious(0) probably_damaging(1) TCGA-50-5935-01 10 32561036 32561036 C T EPC1 Silent p.V664V 0.13 TCGA-50-5935-01 10 43015894 43015894 G A ZNF37BP RNA 0.06 TCGA-50-5935-01 10 84744853 84744853 G C NRG3 Splice_Site p.X528_splice 0.17 TCGA-50-5935-01 11 111590634 111590634 C T SIK2 Missense_Mutation p.H468Y 0.12 deleterious(0.03) benign(0.079) TCGA-50-5935-01 11 114272522 114272522 A G RBM7 Missense_Mutation p.M67V 0.09 deleterious(0.03) benign(0.19) TCGA-50-5935-01 11 120096462 120096462 C A OAF Missense_Mutation p.H108Q 0.05 tolerated(0.13) benign(0.299) TCGA-50-5935-01 11 14880641 14880641 C T PDE3B Missense_Mutation p.A858V 0.12 deleterious(0.02) probably_damaging(1) TCGA-50-5935-01 11 293450 293450 A G ATHL1 Silent p.V476V 0.07 TCGA-50-5935-01 11 3714470 3714470 C T NUP98 Missense_Mutation p.A1435T 0.09 deleterious(0) probably_damaging(0.998) TCGA-50-5935-01 11 55944458 55944458 G A OR5J2 Missense_Mutation p.R122H 0.18 deleterious(0.03) benign(0.165) TCGA-50-5935-01 11 61957768 61957768 G A SCGB1D1 Silent p.S4S 0.07 TCGA-50-5935-01 11 62284242 62284242 G A AHNAK Silent p.L5883L 0.20 TCGA-50-5935-01 12 102811743 102811743 C G IGF1 Missense_Mutation p.Q147H 0.08 deleterious(0.02) possibly_damaging(0.553) TCGA-50-5935-01 12 11461564 11461564 C T PRB4 Missense_Mutation p.G118E 0.12 tolerated_low_confidence(0.15) unknown(0) TCGA-50-5935-01 12 11461628 11461628 C T PRB4 Missense_Mutation p.G97R 0.18 deleterious_low_confidence(0.01) unknown(0) TCGA-50-5935-01 12 11461690 11461690 C T PRB4 Missense_Mutation p.G76E 0.09 tolerated_low_confidence(0.2) unknown(0) TCGA-50-5935-01 12 117723102 117723102 C T NOS1 Silent p.G442G 0.07 TCGA-50-5935-01 12 72007178 72007178 T C ZFC3H1 Missense_Mutation p.Q1855R 0.09 deleterious(0.03) benign(0.152) TCGA-50-5935-01 12 970206 970206 G C WNK1 Missense_Mutation p.D550H 0.07 deleterious(0) unknown(0) TCGA-50-5935-01 13 109610094 109610094 G A MYO16 Missense_Mutation p.E640K 0.23 tolerated(0.05) probably_damaging(0.955) TCGA-50-5935-01 14 23861783 23861783 C G MYH6 Silent p.L1110L 0.09 TCGA-50-5935-01 14 35227951 35227951 C T BAZ1A Missense_Mutation p.D1449N 0.05 deleterious(0.01) probably_damaging(0.989) TCGA-50-5935-01 14 42360699 42360699 C G LRFN5 Missense_Mutation p.F544L 0.04 deleterious(0) probably_damaging(0.999) TCGA-50-5935-01 14 69259641 69259641 G C ZFP36L1 Silent p.L5L 0.04 TCGA-50-5935-01 14 69908920 69908920 C G SLC39A9 Missense_Mutation p.L114V 0.06 deleterious(0.01) possibly_damaging(0.596) TCGA-50-5935-01 14 94413798 94413798 C G ASB2 Missense_Mutation p.E317Q 0.08 tolerated(0.5) benign(0.014) TCGA-50-5935-01 15 57383997 57383997 A G TCF12 Missense_Mutation p.D78G 0.08 tolerated(0.12) probably_damaging(0.995) TCGA-50-5935-01 15 91810797 91810797 G T SV2B Missense_Mutation p.A378S 0.12 deleterious(0.05) benign(0.102) TCGA-50-5935-01 16 19056263 19056263 G C TMC7 Missense_Mutation p.K465N 0.06 deleterious(0.01) benign(0.091) TCGA-50-5935-01 16 30364598 30364598 C T CD2BP2 Silent p.S273S 0.12 TCGA-50-5935-01 16 30676242 30676242 G T FBRS Splice_Site p.X521_splice 0.24 TCGA-50-5935-01 16 89986023 89986023 C T MC1R Silent p.V119V 0.08 TCGA-50-5935-01 17 33770904 33770904 G A SLFN13 Nonsense_Mutation p.Q368* 0.11 TCGA-50-5935-01 17 3593383 3593383 G C P2RX5 Missense_Mutation p.P199A 0.30 deleterious(0) probably_damaging(0.935) TCGA-50-5935-01 17 38935859 38935859 C T KRT27 Silent p.Q289Q 0.10 TCGA-50-5935-01 17 39645783 39645783 G T KRT36 Missense_Mutation p.R112S 0.05 deleterious(0) possibly_damaging(0.781) TCGA-50-5935-01 17 42635739 42635739 C T FZD2 Missense_Mutation p.A228V 0.22 tolerated(0.06) benign(0.03) TCGA-50-5935-01 17 47388720 47388720 A C ZNF652 Missense_Mutation p.D421E 0.25 deleterious(0) probably_damaging(0.952) TCGA-50-5935-01 17 60024297 60024297 G A MED13 Nonsense_Mutation p.Q2125* 0.05 TCGA-50-5935-01 17 72942967 72942967 C T OTOP3 Silent p.F339F 0.11 TCGA-50-5935-01 17 72943371 72943371 G A OTOP3 Missense_Mutation p.R474Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-50-5935-01 17 74004735 74004735 C G EVPL Missense_Mutation p.K1517N 0.05 deleterious(0) probably_damaging(0.999) TCGA-50-5935-01 17 79517327 79517327 C A C17orf70 Missense_Mutation p.S398I 0.06 deleterious(0) possibly_damaging(0.861) TCGA-50-5935-01 18 21086937 21086937 G A C18orf8 Missense_Mutation p.M61I 0.26 tolerated(0.1) benign(0.008) TCGA-50-5935-01 18 60036591 60036591 G A TNFRSF11A Missense_Mutation p.E481K 0.11 tolerated(0.11) benign(0.156) TCGA-50-5935-01 19 15852411 15852411 C G OR10H3 Missense_Mutation p.S70C 0.08 deleterious(0) probably_damaging(0.986) TCGA-50-5935-01 19 17264843 17264843 C G MYO9B Silent p.L355L 0.05 TCGA-50-5935-01 19 39018359 39018359 G A RYR1 Missense_Mutation p.D3587N 0.07 benign(0.031) TCGA-50-5935-01 19 39123104 39123104 G C EIF3K Missense_Mutation p.G130A 0.07 tolerated(0.14) benign(0.021) TCGA-50-5935-01 19 47597768 47597768 C T ZC3H4 Missense_Mutation p.G87R 0.08 probably_damaging(0.999) TCGA-50-5935-01 19 51323577 51323577 G A KLK1 Missense_Mutation p.T110I 0.13 tolerated(0.2) benign(0.023) TCGA-50-5935-01 19 56895542 56895542 C G ZNF582 Missense_Mutation p.R415T 0.08 deleterious(0.01) probably_damaging(0.996) TCGA-50-5935-01 1 110086231 110086231 C T GPR61 Missense_Mutation p.S196L 0.07 deleterious(0) probably_damaging(0.938) TCGA-50-5935-01 1 152082861 152082861 C T TCHH Silent p.L944L 0.03 TCGA-50-5935-01 1 157014172 157014172 G A ARHGEF11 5'UTR 0.07 TCGA-50-5935-01 1 159284287 159284287 G A OR10J3 Missense_Mutation p.H55Y 0.05 tolerated(0.07) benign(0.077) TCGA-50-5935-01 1 193218933 193218933 A T CDC73 Missense_Mutation p.L497F 0.07 deleterious(0.01) probably_damaging(0.98) TCGA-50-5935-01 1 197111590 197111590 C G ASPM Missense_Mutation p.E598Q 0.05 tolerated(0.17) benign(0.025) TCGA-50-5935-01 1 203317286 203317286 T A FMOD Missense_Mutation p.Y38F 0.08 tolerated_low_confidence(0.63) benign(0.34) TCGA-50-5935-01 1 206649522 206649522 A G IKBKE Splice_Site p.X120_splice 0.48 TCGA-50-5935-01 1 209789861 209789861 C T LAMB3 Missense_Mutation p.E1113K 0.06 tolerated(0.49) benign(0.011) TCGA-50-5935-01 1 213415373 213415373 G A RPS6KC1 Missense_Mutation p.D852N 0.04 deleterious(0.04) possibly_damaging(0.69) TCGA-50-5935-01 1 214510074 214510074 G A SMYD2 Missense_Mutation p.G417S 0.08 deleterious(0) probably_damaging(0.949) TCGA-50-5935-01 1 218504419 218504419 G A RRP15 Missense_Mutation p.D279N 0.05 deleterious(0.01) possibly_damaging(0.711) TCGA-50-5935-01 1 22033296 22033296 G A USP48 Nonsense_Mutation p.Q677* 0.11 TCGA-50-5935-01 1 227843344 227843344 G A ZNF678 Missense_Mutation p.E465K 0.08 tolerated(0.06) benign(0.42) TCGA-50-5935-01 1 228492141 228492141 A G OBSCN Missense_Mutation p.R4714G 0.05 probably_damaging(0.992) TCGA-50-5935-01 1 247655031 247655031 G T OR2W5 RNA 0.03 TCGA-50-5935-01 1 249211155 249211155 G C PGBD2 Missense_Mutation p.W124C 0.04 tolerated(0.08) probably_damaging(0.94) TCGA-50-5935-01 1 32672631 32672631 C T IQCC Silent p.S236S 0.11 TCGA-50-5935-01 1 36826829 36826829 G A STK40 Silent p.F35F 0.11 TCGA-50-5935-01 1 95357975 95357975 G C SLC44A3 Missense_Mutation p.E587Q 0.10 tolerated(0.05) benign(0.395) TCGA-50-5935-01 20 21689309 21689309 G T PAX1 Missense_Mutation p.A344S 0.22 tolerated_low_confidence(0.32) benign(0.013) TCGA-50-5935-01 20 23858166 23858166 G T CST5 Missense_Mutation p.F107L 0.11 tolerated(0.14) benign(0.039) TCGA-50-5935-01 20 62365055 62365055 G C ZGPAT Missense_Mutation p.D279H 0.05 deleterious(0) probably_damaging(0.966) TCGA-50-5935-01 20 62891579 62891579 G A PCMTD2 Silent p.L87L 0.08 TCGA-50-5935-01 21 27945234 27945234 C T CYYR1 Missense_Mutation p.R9H 0.09 tolerated_low_confidence(0.17) possibly_damaging(0.812) TCGA-50-5935-01 2 141092095 141092095 G A LRP1B Silent p.S4050S 0.12 TCGA-50-5935-01 2 15629148 15629148 T A NBAS Splice_Site p.X319_splice 0.12 TCGA-50-5935-01 2 179418768 179418768 G T TTN Missense_Mutation p.D29690E 0.28 TCGA-50-5935-01 2 179429186 179429186 C T TTN Missense_Mutation p.V27225I 0.20 TCGA-50-5935-01 2 218712545 218712545 C T TNS1 Missense_Mutation p.G774R 0.17 tolerated(0.19) benign(0.183) TCGA-50-5935-01 2 220239731 220239731 C T DNPEP Missense_Mutation p.R418Q 0.06 deleterious(0) probably_damaging(0.991) TCGA-50-5935-01 2 27802858 27802858 C T C2orf16 Missense_Mutation p.S1140L 0.05 tolerated(0.17) benign(0.261) TCGA-50-5935-01 2 55237228 55237228 T C RTN4 Intron 0.25 TCGA-50-5935-01 3 183883995 183883995 T C DVL3 Missense_Mutation p.M282T 0.09 deleterious(0) possibly_damaging(0.896) TCGA-50-5935-01 3 196612594 196612594 G C SENP5 Missense_Mutation p.G181A 0.12 deleterious_low_confidence(0.03) benign(0.234) TCGA-50-5935-01 3 38136442 38136442 C T DLEC1 Silent p.F664F 0.14 TCGA-50-5935-01 3 38760174 38760174 G A SCN10A Silent p.A1217A 0.12 TCGA-50-5935-01 4 104027348 104027348 C A CENPE 3'UTR 0.08 TCGA-50-5935-01 4 110834393 110834393 C T EGF 5'UTR 0.13 TCGA-50-5935-01 4 123268929 123268929 G A KIAA1109 Missense_Mutation p.R4375Q 0.05 benign(0.001) TCGA-50-5935-01 4 141458637 141458637 G A ELMOD2 Missense_Mutation p.S114N 0.09 tolerated(0.64) benign(0.001) TCGA-50-5935-01 4 16597424 16597424 G T LDB2 Missense_Mutation p.L104I 0.06 tolerated(0.14) possibly_damaging(0.85) TCGA-50-5935-01 5 127648361 127648361 C T FBN2 Missense_Mutation p.G1615E 0.07 deleterious(0) probably_damaging(1) TCGA-50-5935-01 5 137230163 137230163 G C PKD2L2 Missense_Mutation p.R130T 0.08 deleterious(0) possibly_damaging(0.679) TCGA-50-5935-01 5 39021218 39021218 C T RICTOR Missense_Mutation p.E40K 0.07 deleterious(0.01) probably_damaging(0.995) TCGA-50-5935-01 6 29364564 29364564 C T OR12D2 Missense_Mutation p.L30F 0.09 tolerated(0.09) benign(0.12) TCGA-50-5935-01 6 64422504 64422504 C T PHF3 Missense_Mutation p.R1674W 0.06 deleterious(0) possibly_damaging(0.708) TCGA-50-5935-01 7 100684569 100684569 C T MUC17 Missense_Mutation p.T3291I 0.09 possibly_damaging(0.895) TCGA-50-5935-01 7 139575437 139575437 G A TBXAS1 Splice_Site p.X80_splice 0.12 TCGA-50-5935-01 7 149523250 149523250 C T SSPO RNA 0.17 TCGA-50-5935-01 7 15601385 15601385 G A AGMO Missense_Mutation p.S29L 0.07 deleterious(0.03) benign(0.189) TCGA-50-5935-01 7 8790640 8790640 C G NXPH1 Silent p.V19V 0.11 TCGA-50-5935-01 8 100866417 100866417 C T VPS13B Silent p.F3625F 0.21 TCGA-50-5935-01 8 145140569 145140569 C T GPAA1 Silent p.L515L 0.08 TCGA-50-5935-01 8 145158011 145158011 G C SHARPIN Missense_Mutation p.Q107E 0.05 tolerated(0.15) benign(0.006) TCGA-50-5935-01 8 17804748 17804748 A G PCM1 Silent p.Q279Q 0.15 TCGA-50-5935-01 8 22058779 22058779 G A BMP1 Intron 0.13 TCGA-50-5935-01 8 68111195 68111195 G C ARFGEF1 Missense_Mutation p.Q1842E 0.12 tolerated_low_confidence(0.22) benign(0.024) TCGA-50-5935-01 8 94746054 94746054 G - RBM12B Frame_Shift_Del p.P862Lfs*25 0.11 TCGA-50-5935-01 9 140138730 140138730 C T FAM166A Missense_Mutation p.R253K 0.10 deleterious(0.03) benign(0.029) TCGA-50-5935-01 9 2182201 2182201 C G SMARCA2 Missense_Mutation p.L1474V 0.09 possibly_damaging(0.626) TCGA-50-5935-01 9 5920916 5920916 T C KIAA2026 Missense_Mutation p.I1694V 0.11 tolerated(1) benign(0.001) TCGA-50-5935-01 X 118678319 118678319 C G CXorf56 Missense_Mutation p.K140N 0.07 deleterious(0.03) possibly_damaging(0.561) TCGA-50-5935-01 X 12905921 12905921 C T TLR7 Missense_Mutation p.T765I 0.05 deleterious(0) benign(0.431) TCGA-50-5935-01 X 135586542 135586542 G A HTATSF1 Missense_Mutation p.E252K 0.06 deleterious(0.01) possibly_damaging(0.895) TCGA-50-5935-01 X 137793208 137793208 C G FGF13 Intron 0.10 TCGA-50-5935-01 X 142716664 142716664 T C SLITRK4 Missense_Mutation p.D754G 0.26 deleterious(0.03) benign(0.146) TCGA-50-5935-01 X 153186252 153186252 G A ARHGAP4 Missense_Mutation p.T170M 0.05 deleterious(0.01) benign(0.298) TCGA-50-5935-01 X 24580213 24580213 T C PCYT1B 3'UTR 0.10 TCGA-50-5935-01 X 34149208 34149208 C A FAM47A Silent p.V396V 0.07 TCGA-50-5935-01 X 47430737 47430737 G C ARAF Missense_Mutation p.E568Q 0.06 deleterious(0.02) probably_damaging(0.98) TCGA-50-5935-01 X 53610529 53610529 T C HUWE1 Missense_Mutation p.T1837A 0.06 benign(0.064) TCGA-50-5936-01 10 101163595 101163595 G C GOT1 Missense_Mutation p.Q227E 0.28 deleterious(0) probably_damaging(0.961) TCGA-50-5936-01 10 105108755 105108755 C A PCGF6 Missense_Mutation p.R121L 0.24 tolerated(0.06) benign(0.097) TCGA-50-5936-01 10 27539361 27539361 G - RP11-85G18.6 RNA 0.32 TCGA-50-5936-01 10 30316110 30316110 G C KIAA1462 Silent p.P989P 0.27 TCGA-50-5936-01 10 3202411 3202411 T G PITRM1 Silent p.T301T 0.23 TCGA-50-5936-01 10 54048708 54048708 G A PRKG1 Missense_Mutation p.R617K 0.22 deleterious(0) probably_damaging(0.986) TCGA-50-5936-01 10 62038898 62038898 C G ANK3 Missense_Mutation p.L75F 0.27 probably_damaging(0.999) TCGA-50-5936-01 11 124310358 124310358 A C OR8B8 Silent p.G208G 0.40 TCGA-50-5936-01 11 124637469 124637469 T C MSANTD2 Missense_Mutation p.E376G 0.13 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-50-5936-01 11 128354828 128354828 G A ETS1 Missense_Mutation p.S251L 0.52 tolerated(0.09) benign(0.001) TCGA-50-5936-01 11 65375408 65375408 C A MAP3K11 Missense_Mutation p.A352S 0.64 tolerated(0.09) probably_damaging(0.996) TCGA-50-5936-01 11 66282099 66282099 C T BBS1 Nonsense_Mutation p.Q128* 0.07 TCGA-50-5936-01 11 86267677 86267677 C A ME3 Missense_Mutation p.V129L 0.33 tolerated(0.07) benign(0.106) TCGA-50-5936-01 12 10332047 10332047 G A TMEM52B 5'UTR 0.38 TCGA-50-5936-01 12 109872885 109872885 G A MYO1H Missense_Mutation p.E687K 0.35 deleterious(0) possibly_damaging(0.836) TCGA-50-5936-01 12 117672562 117672562 G A NOS1 Missense_Mutation p.R1049W 0.17 deleterious(0) probably_damaging(1) TCGA-50-5936-01 12 120899758 120899770 AGATTCTGAGCAC - SRSF9 3'UTR 0.52 TCGA-50-5936-01 12 123087269 123087269 A C KNTC1 Missense_Mutation p.N1603H 0.16 tolerated(0.5) possibly_damaging(0.787) TCGA-50-5936-01 12 14778702 14778702 C T GUCY2C Missense_Mutation p.M799I 0.24 deleterious(0.02) benign(0.341) TCGA-50-5936-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.26 deleterious(0.04) probably_damaging(0.993) TCGA-50-5936-01 12 27066581 27066581 G A ASUN Silent p.T538T 0.23 TCGA-50-5936-01 12 3677968 3677968 A G PRMT8 Missense_Mutation p.Y193C 0.26 deleterious(0) probably_damaging(1) TCGA-50-5936-01 12 4872541 4872541 C T GALNT8 Silent p.I494I 0.32 TCGA-50-5936-01 12 53162394 53162394 A C KRT76 3'UTR 0.13 TCGA-50-5936-01 12 6647123 6647123 G A GAPDH Missense_Mutation p.G300D 0.06 deleterious_low_confidence(0.03) possibly_damaging(0.906) TCGA-50-5936-01 12 72022764 72022764 T G ZFC3H1 Silent p.R1294R 0.12 TCGA-50-5936-01 13 113832459 113832459 A C PCID2 Intron 0.50 TCGA-50-5936-01 13 21417149 21417149 T A XPO4 Missense_Mutation p.E204D 0.14 tolerated(0.07) benign(0.021) TCGA-50-5936-01 13 46559563 46559563 C T ZC3H13 Missense_Mutation p.G530D 0.18 probably_damaging(0.996) TCGA-50-5936-01 14 105692426 105692426 A C BRF1 Missense_Mutation p.L343R 0.18 deleterious(0.05) benign(0.14) TCGA-50-5936-01 14 107049106 107049106 C T IGHV3-53 Silent p.L5L 0.24 TCGA-50-5936-01 14 107211125 107211125 C A IGHV3-73 Missense_Mutation p.W55L 0.29 deleterious_low_confidence(0) possibly_damaging(0.807) TCGA-50-5936-01 15 40764548 40764548 G C CHST14 3'UTR 0.23 TCGA-50-5936-01 15 50769639 50769639 T G USP8 Silent p.S387S 0.24 TCGA-50-5936-01 15 79058500 79058500 G A ADAMTS7 Silent p.S1251S 0.33 TCGA-50-5936-01 15 80869214 80869214 G A ARNT2 Silent p.K507K 0.30 TCGA-50-5936-01 15 80869217 80869217 G A ARNT2 Silent p.K508K 0.28 TCGA-50-5936-01 16 27481580 27481580 C T GTF3C1 Missense_Mutation p.D1555N 0.23 deleterious(0.05) benign(0.027) TCGA-50-5936-01 16 2813050 2813050 C T SRRM2 Missense_Mutation p.H841Y 0.29 unknown(0) TCGA-50-5936-01 16 30408675 30408675 C T ZNF48 Missense_Mutation p.S35F 0.22 tolerated(0.06) benign(0.03) TCGA-50-5936-01 16 30409150 30409150 C G ZNF48 Missense_Mutation p.I193M 0.24 tolerated(0.09) probably_damaging(0.945) TCGA-50-5936-01 16 30732059 30732059 G C SRCAP Missense_Mutation p.E1005Q 0.28 unknown(0) TCGA-50-5936-01 16 47533691 47533691 A G PHKB Missense_Mutation p.Q64R 0.28 deleterious(0) probably_damaging(0.965) TCGA-50-5936-01 17 11631220 11631220 T A DNAH9 Nonsense_Mutation p.L1932* 0.43 TCGA-50-5936-01 17 2234267 2234267 C T TSR1 Missense_Mutation p.E545K 0.24 tolerated(0.1) benign(0.03) TCGA-50-5936-01 17 27613317 27613317 G A NUFIP2 Silent p.Y565Y 0.12 TCGA-50-5936-01 17 66042019 66042019 G C KPNA2 Missense_Mutation p.E493D 0.19 tolerated(0.29) benign(0.001) TCGA-50-5936-01 17 79910829 79910829 C T NOTUM 3'UTR 0.15 TCGA-50-5936-01 18 2567170 2567170 G C METTL4 Missense_Mutation p.L16V 0.40 deleterious(0) possibly_damaging(0.706) TCGA-50-5936-01 18 29039000 29039000 C A DSG3 Missense_Mutation p.T126K 0.39 tolerated(1) probably_damaging(0.978) TCGA-50-5936-01 18 8406203 8406203 G T PTPRM 3'UTR 0.45 TCGA-50-5936-01 19 10610574 10610574 G A KEAP1 Nonsense_Mutation p.Q46* 0.30 TCGA-50-5936-01 19 11100021 11100021 C T SMARCA4 Nonsense_Mutation p.Q383* 0.20 TCGA-50-5936-01 19 2813149 2813149 G T THOP1 Missense_Mutation p.G649C 0.43 deleterious(0) probably_damaging(1) TCGA-50-5936-01 19 2813150 2813150 G T THOP1 Missense_Mutation p.G649V 0.36 deleterious(0) probably_damaging(0.997) TCGA-50-5936-01 19 31768163 31768163 C G TSHZ3 Missense_Mutation p.D846H 0.56 deleterious(0) probably_damaging(0.999) TCGA-50-5936-01 19 39962250 39962250 A G SUPT5H Silent p.R610R 0.60 TCGA-50-5936-01 19 49982278 49982278 G T FLT3LG Missense_Mutation p.R152L 0.47 tolerated(0.11) benign(0.253) TCGA-50-5936-01 1 120057020 120057020 T C HSD3B1 Missense_Mutation p.Y292H 0.24 deleterious(0) probably_damaging(1) TCGA-50-5936-01 1 145535838 145535838 C T ITGA10 Silent p.L676L 0.40 TCGA-50-5936-01 1 149858560 149858560 C T HIST2H2AC Silent p.R12R 0.28 TCGA-50-5936-01 1 153907270 153907270 C T DENND4B Silent p.V913V 0.36 TCGA-50-5936-01 1 197019966 197019966 T A F13B Silent p.G533G 0.22 TCGA-50-5936-01 1 200014594 200014594 A T NR5A2 Missense_Mutation p.Q115H 0.17 deleterious(0) probably_damaging(0.953) TCGA-50-5936-01 1 201749556 201749556 G A NAV1 Missense_Mutation p.E412K 0.22 tolerated(0.1) probably_damaging(0.972) TCGA-50-5936-01 1 201777216 201777216 G A NAV1 Missense_Mutation p.E1262K 0.35 tolerated(0.18) benign(0.102) TCGA-50-5936-01 1 216405452 216405452 T C USH2A Missense_Mutation p.T946A 0.36 benign(0.012) TCGA-50-5936-01 1 220160560 220160560 C A EPRS Missense_Mutation p.D988Y 0.28 deleterious(0.01) benign(0.192) TCGA-50-5936-01 1 229771675 229771675 G A URB2 Missense_Mutation p.E439K 0.30 tolerated(0.13) benign(0.335) TCGA-50-5936-01 1 230415081 230415081 G C GALNT2 Silent p.L531L 0.34 TCGA-50-5936-01 1 238048576 238048576 G T ZP4 Silent p.I400I 0.28 TCGA-50-5936-01 1 247587274 247587274 C A NLRP3 Missense_Mutation p.H177N 0.54 deleterious(0.01) possibly_damaging(0.635) TCGA-50-5936-01 1 40562949 40562949 G A PPT1 5'UTR 0.31 TCGA-50-5936-01 1 46976626 46976626 G A DMBX1 Missense_Mutation p.R118Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-50-5936-01 1 76198356 76198356 A C ACADM Missense_Mutation p.Q53P 0.44 deleterious(0) probably_damaging(0.936) TCGA-50-5936-01 1 99764596 99764596 C T LPPR4 Missense_Mutation p.H182Y 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-50-5936-01 20 30451754 30451754 G A DUSP15 Silent p.F73F 0.22 TCGA-50-5936-01 21 19775898 19775898 G A TMPRSS15 Silent p.L14L 0.15 TCGA-50-5936-01 22 18022656 18022656 G A CECR2 Missense_Mutation p.E921K 0.54 deleterious_low_confidence(0.01) benign(0.075) TCGA-50-5936-01 22 30640019 30640019 T - LIF Frame_Shift_Del p.N77Tfs*10 0.26 TCGA-50-5936-01 22 50506929 50506929 G C MLC1 Missense_Mutation p.S276C 0.38 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-50-5936-01 22 50682674 50682674 A G TUBGCP6 Missense_Mutation p.M72T 0.50 deleterious(0) benign(0.201) TCGA-50-5936-01 2 101874279 101874279 G A CNOT11 Missense_Mutation p.E181K 0.35 deleterious(0.03) benign(0.069) TCGA-50-5936-01 2 101874347 101874347 G C CNOT11 Missense_Mutation p.Q203H 0.39 deleterious(0) benign(0.276) TCGA-50-5936-01 2 160086373 160086373 C G TANC1 Missense_Mutation p.P1479R 0.30 tolerated_low_confidence(0.16) benign(0.004) TCGA-50-5936-01 2 168104901 168104901 G A XIRP2 Silent p.K2333K 0.28 TCGA-50-5936-01 2 175436481 175436481 G A WIPF1 Missense_Mutation p.P351L 0.39 deleterious(0.01) benign(0.01) TCGA-50-5936-01 2 182852547 182852547 G T PPP1R1C Silent p.L28L 0.34 TCGA-50-5936-01 2 21234442 21234442 G C APOB Missense_Mutation p.F1766L 0.25 benign(0.007) TCGA-50-5936-01 2 219029334 219029334 C G CXCR1 Missense_Mutation p.V201L 0.16 tolerated(0.17) benign(0.029) TCGA-50-5936-01 2 39089319 39089319 T A DHX57 Silent p.T180T 0.18 TCGA-50-5936-01 2 44051074 44051074 G T ABCG5 Silent p.G434G 0.15 TCGA-50-5936-01 2 71795381 71795381 C T DYSF Missense_Mutation p.T926M 0.03 deleterious(0.02) benign(0.095) TCGA-50-5936-01 3 111638039 111638039 C A PHLDB2 Missense_Mutation p.Q614K 0.21 deleterious(0) probably_damaging(0.997) TCGA-50-5936-01 3 112080563 112080563 C T CD200 3'UTR 0.23 TCGA-50-5936-01 3 124578095 124578095 G A ITGB5 Missense_Mutation p.R119W 0.26 deleterious(0) probably_damaging(1) TCGA-50-5936-01 3 158322896 158322896 C T MLF1 Nonsense_Mutation p.Q269* 0.24 TCGA-50-5936-01 3 185146488 185146488 C A MAP3K13 Missense_Mutation p.P40H 0.09 deleterious_low_confidence(0) benign(0.376) TCGA-50-5936-01 3 19961408 19961408 C T EFHB Missense_Mutation p.E305K 0.22 tolerated(0.33) benign(0.015) TCGA-50-5936-01 3 25781184 25781184 T A NGLY1 Silent p.G255G 0.28 TCGA-50-5936-01 3 78710334 78710334 G T ROBO1 Missense_Mutation p.D722E 0.10 tolerated(1) benign(0.002) TCGA-50-5936-01 3 97888478 97888478 C T OR5H15 Missense_Mutation p.S312L 0.19 tolerated_low_confidence(0.11) benign(0.005) TCGA-50-5936-01 3 99895199 99895199 T G CMSS1 Missense_Mutation p.F232L 0.29 tolerated(0.08) benign(0.029) TCGA-50-5936-01 4 134073258 134073258 G A PCDH10 Missense_Mutation p.E655K 0.37 tolerated(0.17) benign(0.243) TCGA-50-5936-01 4 184596357 184596357 G T TRAPPC11 Missense_Mutation p.S234I 0.53 deleterious(0.03) benign(0.403) TCGA-50-5936-01 4 6718324 6718324 C T BLOC1S4 Missense_Mutation p.R130C 0.47 deleterious(0.02) possibly_damaging(0.799) TCGA-50-5936-01 5 121488198 121488198 T G ZNF474 Missense_Mutation p.C171W 0.26 deleterious(0) probably_damaging(1) TCGA-50-5936-01 5 137734048 137734048 G C KDM3B Missense_Mutation p.E1005Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-50-5936-01 5 140605416 140605416 G T PCDHB14 Missense_Mutation p.G780V 0.26 tolerated_low_confidence(0.05) benign(0.08) TCGA-50-5936-01 5 140741814 140741814 C G PCDHGB2 Missense_Mutation p.F704L 0.25 tolerated(1) benign(0) TCGA-50-5936-01 5 35954243 35954243 G C UGT3A1 3'UTR 0.20 TCGA-50-5936-01 5 35954244 35954244 G T UGT3A1 3'UTR 0.24 TCGA-50-5936-01 5 89923136 89923136 A T GPR98 Missense_Mutation p.S261C 0.25 possibly_damaging(0.869) TCGA-50-5936-01 6 110763563 110763563 G T SLC22A16 Missense_Mutation p.T356K 0.31 deleterious(0) benign(0.112) TCGA-50-5936-01 6 116263687 116263687 A G FRK Missense_Mutation p.W470R 0.30 deleterious(0) probably_damaging(1) TCGA-50-5936-01 6 136963676 136963676 G C MAP3K5 Missense_Mutation p.S607C 0.38 deleterious(0) benign(0.22) TCGA-50-5936-01 6 139241422 139241422 C A REPS1 Silent p.V486V 0.18 TCGA-50-5936-01 6 31746796 31746796 G A VARS Missense_Mutation p.S1225L 0.29 deleterious(0.02) benign(0.003) TCGA-50-5936-01 6 49704133 49704133 A T CRISP3 Missense_Mutation p.S77T 0.09 tolerated(0.07) benign(0.051) TCGA-50-5936-01 6 54245341 54245341 G T TINAG Missense_Mutation p.G423V 0.44 tolerated(0.6) probably_damaging(0.993) TCGA-50-5936-01 6 90660737 90660737 T A BACH2 Missense_Mutation p.H363L 0.33 tolerated(0.78) benign(0.001) TCGA-50-5936-01 7 100159952 100159952 C T AGFG2 Silent p.D316D 0.12 TCGA-50-5936-01 7 107115456 107115456 G A GPR22 Silent p.L317L 0.12 TCGA-50-5936-01 7 111629071 111629071 C G DOCK4 Missense_Mutation p.E155Q 0.36 deleterious(0.05) possibly_damaging(0.77) TCGA-50-5936-01 7 137761344 137761344 C G AKR1D1 Nonsense_Mutation p.S27* 0.36 TCGA-50-5936-01 7 143807577 143807577 A C OR2A2 Missense_Mutation p.H301P 0.33 tolerated(0.12) benign(0.039) TCGA-50-5936-01 7 44799010 44799010 G C ZMIZ2 Missense_Mutation p.G315A 0.21 tolerated(0.26) benign(0.003) TCGA-50-5936-01 7 550631 550631 C A PDGFA Nonsense_Mutation p.E90* 0.38 TCGA-50-5936-01 7 7612605 7612605 G A MIOS Missense_Mutation p.E167K 0.12 tolerated(0.31) benign(0.029) TCGA-50-5936-01 7 88847483 88847483 G C ZNF804B Missense_Mutation p.K41N 0.08 deleterious(0) probably_damaging(0.997) TCGA-50-5936-01 8 10467205 10467205 T G RP1L1 Missense_Mutation p.Q1468P 0.28 unknown(0) TCGA-50-5936-01 8 106431460 106431460 G C ZFPM2 Missense_Mutation p.E43D 0.23 tolerated(0.25) probably_damaging(0.99) TCGA-50-5936-01 8 110984680 110984680 G A KCNV1 Silent p.D266D 0.18 TCGA-50-5936-01 8 116426804 116426804 G T TRPS1 Missense_Mutation p.P1111H 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-50-5936-01 8 12958176 12958177 - A DLC1 Frame_Shift_Ins p.S557Ffs*63 0.28 TCGA-50-5936-01 8 146107103 146107103 G C ZNF250 Missense_Mutation p.L494V 0.24 deleterious(0) probably_damaging(0.999) TCGA-50-5936-01 8 21951987 21951987 G A FAM160B2 Missense_Mutation p.E28K 0.34 tolerated(0.18) benign(0.211) TCGA-50-5936-01 8 32616840 32616841 - G NRG1 Frame_Shift_Ins p.N321Kfs*6 0.15 TCGA-50-5936-01 8 41387758 41387758 G A GINS4 Missense_Mutation p.D13N 0.27 tolerated(0.06) benign(0.014) TCGA-50-5936-01 8 59409214 59409214 G A CYP7A1 Missense_Mutation p.S286L 0.28 deleterious(0) probably_damaging(0.969) TCGA-50-5936-01 8 68114002 68114002 G A ARFGEF1 Intron 0.28 TCGA-50-5936-01 8 9609136 9609136 T G TNKS Silent p.A950A 0.25 TCGA-50-5936-01 9 124906576 124906576 C A NDUFA8 Nonsense_Mutation p.E155* 0.55 TCGA-50-5936-01 9 137777710 137777710 G T FCN2 Missense_Mutation p.G176W 0.35 deleterious(0) probably_damaging(1) TCGA-50-5936-01 9 15189720 15189720 T G TTC39B Intron 0.29 TCGA-50-5936-01 9 35611857 35611857 C A CD72 Missense_Mutation p.W298C 0.42 deleterious(0) probably_damaging(0.999) TCGA-50-5936-01 9 5757362 5757362 C A KIAA1432 Missense_Mutation p.R635S 0.05 tolerated(0.59) benign(0.158) TCGA-50-5936-01 9 84605787 84605787 G C SPATA31D1 Missense_Mutation p.K134N 0.41 tolerated(1) benign(0.001) TCGA-50-5936-01 X 150869297 150869297 G C PRRG3 Missense_Mutation p.R163P 0.57 tolerated(0.31) possibly_damaging(0.829) TCGA-50-5936-01 X 2635666 2635666 A T CD99 Missense_Mutation p.T41S 0.16 tolerated(0.61) possibly_damaging(0.621) TCGA-50-5936-01 X 75648900 75648900 G A MAGEE1 Missense_Mutation p.D193N 0.31 tolerated_low_confidence(0.32) benign(0.005) TCGA-50-5939-01 10 102782064 102782064 G A PDZD7 Silent p.V207V 0.10 TCGA-50-5939-01 10 122622304 122622304 C T WDR11 Missense_Mutation p.S195L 0.05 tolerated(0.07) benign(0.015) TCGA-50-5939-01 10 128193152 128193152 C T C10orf90 Missense_Mutation p.R206Q 0.13 tolerated(0.27) benign(0.355) TCGA-50-5939-01 10 27329051 27329051 C T ANKRD26 Missense_Mutation p.E740K 0.24 tolerated(0.06) possibly_damaging(0.536) TCGA-50-5939-01 10 4877971 4877971 C G AKR1E2 Silent p.P143P 0.13 TCGA-50-5939-01 10 68686763 68686763 C - LRRTM3 Frame_Shift_Del p.E31Nfs*34 0.13 TCGA-50-5939-01 10 95660511 95660511 C T SLC35G1 Missense_Mutation p.T121I 0.11 tolerated(0.07) benign(0.047) TCGA-50-5939-01 11 36596221 36596221 C T RAG1 Missense_Mutation p.A456V 0.12 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-50-5939-01 11 40136625 40136625 G T LRRC4C Silent p.L406L 0.17 TCGA-50-5939-01 11 55890333 55890333 C A OR8H3 Missense_Mutation p.S162Y 0.17 tolerated(0.91) benign(0.003) TCGA-50-5939-01 11 59211414 59211414 C T OR5A1 Missense_Mutation p.A258V 0.16 tolerated(0.34) possibly_damaging(0.562) TCGA-50-5939-01 11 72412759 72412759 T G ARAP1 Missense_Mutation p.H746P 0.18 deleterious(0.02) possibly_damaging(0.864) TCGA-50-5939-01 11 73007896 73007896 C T P2RY6 Silent p.H111H 0.11 TCGA-50-5939-01 11 8959615 8959615 C A ASCL3 Nonsense_Mutation p.E32* 0.06 TCGA-50-5939-01 12 102542294 102542294 T G PARPBP Intron 0.33 TCGA-50-5939-01 12 108686166 108686166 T C CMKLR1 Missense_Mutation p.N192D 0.19 deleterious(0.01) possibly_damaging(0.775) TCGA-50-5939-01 12 108686195 108686195 T G CMKLR1 Missense_Mutation p.N182T 0.14 tolerated(0.61) benign(0.002) TCGA-50-5939-01 12 108686229 108686229 T G CMKLR1 Missense_Mutation p.S171R 0.11 deleterious(0) possibly_damaging(0.844) TCGA-50-5939-01 12 113319638 113319638 C G RPH3A Missense_Mutation p.P438R 0.04 deleterious(0) probably_damaging(0.998) TCGA-50-5939-01 12 53074043 53074043 C T KRT1 Silent p.R30R 0.13 TCGA-50-5939-01 12 54675629 54675629 A G HNRNPA1 Silent p.T61T 0.12 TCGA-50-5939-01 12 54686563 54686571 CGTAGGAAA - NFE2 In_Frame_Del p.F237_T239del 0.13 TCGA-50-5939-01 12 56510448 56510448 G T RPL41 5'UTR 0.12 TCGA-50-5939-01 12 57919411 57919411 C T MBD6 Silent p.I220I 0.03 TCGA-50-5939-01 12 78516195 78516195 A T NAV3 Missense_Mutation p.T1409S 0.25 tolerated(0.25) possibly_damaging(0.832) TCGA-50-5939-01 12 78516196 78516196 C G NAV3 Missense_Mutation p.T1409S 0.24 tolerated(0.25) possibly_damaging(0.832) TCGA-50-5939-01 12 85449827 85449827 A C LRRIQ1 Missense_Mutation p.K419T 0.14 deleterious(0) possibly_damaging(0.776) TCGA-50-5939-01 13 109496821 109496821 G A MYO16 Missense_Mutation p.G388S 0.15 tolerated(0.24) benign(0.01) TCGA-50-5939-01 14 102500313 102500313 G C DYNC1H1 Missense_Mutation p.V3472L 0.20 probably_damaging(1) TCGA-50-5939-01 14 105413727 105413727 C T AHNAK2 Missense_Mutation p.M2687I 0.05 benign(0.054) TCGA-50-5939-01 15 22382659 22382659 C T OR4N4 Silent p.L63L 0.09 TCGA-50-5939-01 15 40500858 40500858 G A BUB1B Missense_Mutation p.R677H 0.14 tolerated(0.34) benign(0.001) TCGA-50-5939-01 16 3725361 3725361 G A TRAP1 Silent p.P284P 0.17 TCGA-50-5939-01 16 55522477 55522477 C G MMP2 Missense_Mutation p.N285K 0.15 deleterious(0) probably_damaging(0.997) TCGA-50-5939-01 16 57490845 57490845 A G COQ9 Missense_Mutation p.K175R 0.25 tolerated(0.13) possibly_damaging(0.566) TCGA-50-5939-01 16 715599 715599 G T WDR90 Intron 0.17 TCGA-50-5939-01 16 76556003 76556003 C A CNTNAP4 Silent p.P795P 0.07 TCGA-50-5939-01 17 1370595 1370595 C T MYO1C Missense_Mutation p.D1036N 0.21 tolerated(0.05) probably_damaging(1) TCGA-50-5939-01 17 35512644 35512644 G C ACACA Missense_Mutation p.S1803C 0.20 deleterious(0.01) possibly_damaging(0.86) TCGA-50-5939-01 17 37687195 37687195 G C CDK12 Missense_Mutation p.V1367L 0.17 benign(0.024) TCGA-50-5939-01 17 45569830 45569830 T C MRPL45P2 RNA 0.09 TCGA-50-5939-01 17 5436224 5436224 G A NLRP1 Missense_Mutation p.P1072S 0.27 tolerated(0.5) benign(0.006) TCGA-50-5939-01 17 56233005 56233005 T A OR4D1 Missense_Mutation p.L164H 0.15 deleterious(0) probably_damaging(0.967) TCGA-50-5939-01 17 7315483 7315483 C T NLGN2 Silent p.L155L 0.31 TCGA-50-5939-01 17 7577085 7577085 C T TP53 Missense_Mutation p.E285K 0.30 deleterious(0) probably_damaging(0.985) TCGA-50-5939-01 18 28728565 28728565 T A DSC1 Missense_Mutation p.E223V 0.16 deleterious(0) possibly_damaging(0.791) TCGA-50-5939-01 18 33779985 33779985 G A MOCOS Silent p.L213L 0.25 TCGA-50-5939-01 19 10602796 10602796 C G KEAP1 Missense_Mutation p.R261P 0.25 tolerated(0.33) possibly_damaging(0.717) TCGA-50-5939-01 19 1220717 1220717 G T STK11 Splice_Site p.X245_splice 0.24 TCGA-50-5939-01 19 35175421 35175421 C T ZNF302 Missense_Mutation p.S160L 0.13 tolerated(0.35) benign(0.009) TCGA-50-5939-01 19 54377753 54377753 G A MYADM 3'UTR 0.08 TCGA-50-5939-01 1 120300051 120300051 A T HMGCS2 Missense_Mutation p.D287E 0.23 tolerated(0.51) benign(0) TCGA-50-5939-01 1 12785267 12785267 C A AADACL3 Silent p.S119S 0.15 TCGA-50-5939-01 1 142713769 142713769 T C RP11-417J8.6 RNA 0.11 TCGA-50-5939-01 1 153748035 153748035 A G SLC27A3 Missense_Mutation p.H68R 0.33 tolerated(0.2) benign(0.035) TCGA-50-5939-01 1 159273855 159273855 G C FCER1A Missense_Mutation p.E72Q 0.17 tolerated(0.54) benign(0.014) TCGA-50-5939-01 1 22447964 22447964 C T WNT4 Missense_Mutation p.R140K 0.18 tolerated(0.19) benign(0.41) TCGA-50-5939-01 1 231700631 231700631 C G TSNAX Missense_Mutation p.Q285E 0.12 tolerated(1) benign(0.002) TCGA-50-5939-01 1 231700636 231700636 A G TSNAX Silent p.E286E 0.11 TCGA-50-5939-01 1 244214608 244214608 G A ZBTB18 5'UTR 0.23 TCGA-50-5939-01 1 248059023 248059023 C G OR2W3 Missense_Mutation p.I45M 0.05 deleterious(0) probably_damaging(0.985) TCGA-50-5939-01 1 35921751 35921751 C T KIAA0319L Missense_Mutation p.A507T 0.17 deleterious(0.02) probably_damaging(1) TCGA-50-5939-01 1 52283748 52283748 G A NRD1 Nonsense_Mutation p.Q519* 0.12 TCGA-50-5939-01 1 87805268 87805268 G C LMO4 Missense_Mutation p.A96P 0.16 tolerated(0.08) possibly_damaging(0.659) TCGA-50-5939-01 1 90058463 90058463 A G LRRC8B Missense_Mutation p.N758S 0.20 deleterious(0) probably_damaging(0.983) TCGA-50-5939-01 20 35384135 35384135 G A DSN1 Nonsense_Mutation p.Q275* 0.19 TCGA-50-5939-01 21 35190760 35190760 A G ITSN1 Missense_Mutation p.I973V 0.17 tolerated(0.31) benign(0.002) TCGA-50-5939-01 21 35898979 35898979 G A RCAN1 Intron 0.29 TCGA-50-5939-01 2 10192429 10192429 G A KLF11 Missense_Mutation p.R445H 0.06 deleterious(0.02) probably_damaging(0.965) TCGA-50-5939-01 2 168106620 168106620 G C XIRP2 Missense_Mutation p.E2906D 0.13 benign(0.001) TCGA-50-5939-01 2 189950490 189950490 T C COL5A2 Silent p.A233A 0.15 TCGA-50-5939-01 2 210882212 210882212 A G RPE Missense_Mutation p.T165A 0.06 tolerated(0.78) benign(0.001) TCGA-50-5939-01 2 21236089 21236089 C G APOB Missense_Mutation p.A1387P 0.23 probably_damaging(0.997) TCGA-50-5939-01 2 219266341 219266342 - A CTDSP1 Frame_Shift_Ins p.L42Tfs*9 0.18 TCGA-50-5939-01 2 241569288 241569288 G A GPR35 Intron 0.14 TCGA-50-5939-01 2 74784050 74784050 C T DOK1 Missense_Mutation p.P419S 0.13 deleterious(0.02) benign(0.062) TCGA-50-5939-01 3 43596810 43596810 C T ANO10 Missense_Mutation p.R543H 0.21 deleterious(0) probably_damaging(0.999) TCGA-50-5939-01 3 46937261 46937261 C A PTH1R Missense_Mutation p.A72E 0.17 tolerated(0.17) benign(0.04) TCGA-50-5939-01 3 58629398 58629398 G T FAM3D Missense_Mutation p.L105M 0.21 deleterious(0) probably_damaging(1) TCGA-50-5939-01 4 2242226 2242226 G A HAUS3 Nonsense_Mutation p.Q150* 0.18 TCGA-50-5939-01 4 71508556 71508556 T A ENAM Nonsense_Mutation p.Y471* 0.19 TCGA-50-5939-01 5 137206504 137206504 C T MYOT Missense_Mutation p.S55F 0.19 deleterious(0.03) possibly_damaging(0.542) TCGA-50-5939-01 5 138269764 138269764 A G CTNNA1 Missense_Mutation p.M903V 0.17 tolerated(0.57) benign(0.002) TCGA-50-5939-01 5 148626096 148626096 G A ABLIM3 Missense_Mutation p.R513H 0.06 tolerated(0.45) benign(0.002) TCGA-50-5939-01 5 151775143 151775143 C A NMUR2 Missense_Mutation p.V272F 0.27 deleterious(0.01) possibly_damaging(0.746) TCGA-50-5939-01 5 157181030 157181030 G A LSM11 Missense_Mutation p.E203K 0.24 deleterious(0) benign(0.258) TCGA-50-5939-01 5 159912401 159912401 G T MIR146A RNA 0.11 TCGA-50-5939-01 5 160114890 160114890 C T ATP10B Silent p.R64R 0.17 TCGA-50-5939-01 5 16067562 16067562 C T MARCH11 3'UTR 0.15 TCGA-50-5939-01 5 176938674 176938674 G A DDX41 3'UTR 0.29 TCGA-50-5939-01 5 74892989 74892989 G T POLK Missense_Mutation p.S824I 0.16 tolerated(0.09) benign(0.365) TCGA-50-5939-01 5 94878980 94878980 C A TTC37 Missense_Mutation p.V48F 0.12 deleterious(0.02) possibly_damaging(0.878) TCGA-50-5939-01 6 16327538 16327538 C T ATXN1 Missense_Mutation p.G335E 0.21 deleterious(0.01) probably_damaging(0.993) TCGA-50-5939-01 6 31926915 31926915 C T SKIV2L 5'UTR 0.28 TCGA-50-5939-01 6 34825625 34825625 C G UHRF1BP1 Missense_Mutation p.I566M 0.06 deleterious(0.04) probably_damaging(0.984) TCGA-50-5939-01 7 151135071 151135071 G A CRYGN Intron 0.14 TCGA-50-5939-01 7 151849821 151849821 C A KMT2C Missense_Mutation p.Q4165H 0.15 benign(0.008) TCGA-50-5939-01 7 76924258 76924258 G A CCDC146 3'UTR 0.33 TCGA-50-5939-01 7 82451802 82451802 G A PCLO Intron 0.18 TCGA-50-5939-01 7 87133549 87133552 CAGT - ABCB1 3'UTR 0.26 TCGA-50-5939-01 8 126448609 126448609 G T TRIB1 Nonsense_Mutation p.E339* 0.11 TCGA-50-5939-01 8 95416341 95416341 C T RAD54B Missense_Mutation p.G303E 0.25 deleterious(0) probably_damaging(1) TCGA-50-5939-01 9 130536699 130536699 A G SH2D3C Missense_Mutation p.S29P 0.09 tolerated(0.16) benign(0.403) TCGA-50-5939-01 9 2811463 2811463 C A KIAA0020 Silent p.V511V 0.15 TCGA-50-5939-01 9 95432294 95432294 C T IPPK 5'UTR 0.56 TCGA-50-5939-01 X 135487991 135487991 G A GPR112 Missense_Mutation p.R2932Q 0.20 tolerated(0.23) benign(0.041) TCGA-50-5939-01 X 18927024 18927024 C T PHKA2 Missense_Mutation p.R752K 0.27 tolerated(0.32) benign(0.002) TCGA-50-5939-01 X 32361373 32361373 G A DMD Silent p.L1873L 0.34 TCGA-50-5941-01 10 103292158 103292158 T C BTRC Missense_Mutation p.I316T 0.08 deleterious(0) probably_damaging(0.994) TCGA-50-5941-01 10 106209934 106209934 G T CCDC147 Missense_Mutation p.A828S 0.17 tolerated(0.76) benign(0.007) TCGA-50-5941-01 10 108923853 108923853 C G SORCS1 Missense_Mutation p.E144D 0.14 tolerated(0.5) benign(0.006) TCGA-50-5941-01 10 115334134 115334134 C A HABP2 Missense_Mutation p.P65T 0.15 tolerated(0.12) possibly_damaging(0.758) TCGA-50-5941-01 10 118220524 118220524 C A PNLIPRP3 Silent p.V204V 0.13 TCGA-50-5941-01 10 118386413 118386413 G C PNLIPRP2 Silent p.V123V 0.13 TCGA-50-5941-01 10 118386414 118386414 G A PNLIPRP2 Missense_Mutation p.D124N 0.13 tolerated(0.07) possibly_damaging(0.87) TCGA-50-5941-01 10 124345771 124345771 G T DMBT1 Missense_Mutation p.G552V 0.09 deleterious(0) unknown(0) TCGA-50-5941-01 10 15290756 15290756 G T FAM171A1 Missense_Mutation p.S212R 0.12 tolerated(0.27) benign(0.026) TCGA-50-5941-01 10 15639265 15639265 C G ITGA8 Missense_Mutation p.E718Q 0.05 tolerated(0.08) possibly_damaging(0.799) TCGA-50-5941-01 10 17362912 17362912 G C ST8SIA6 Missense_Mutation p.L388V 0.07 tolerated(0.2) probably_damaging(0.913) TCGA-50-5941-01 10 18940128 18940128 G C NSUN6 Missense_Mutation p.S2C 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.572) TCGA-50-5941-01 10 50820036 50820036 A T SLC18A3 Missense_Mutation p.Y417F 0.12 deleterious(0) probably_damaging(1) TCGA-50-5941-01 10 55582022 55582022 G C PCDH15 Missense_Mutation p.P1824A 0.06 tolerated_low_confidence(0.49) unknown(0) TCGA-50-5941-01 10 5827102 5827102 T A GDI2 Intron 0.16 TCGA-50-5941-01 10 69957180 69957180 A C MYPN Missense_Mutation p.Q1077P 0.08 deleterious(0.01) benign(0.068) TCGA-50-5941-01 10 71913618 71913618 C G SAR1A Silent p.G152G 0.04 TCGA-50-5941-01 10 75533453 75533453 A T FUT11 Missense_Mutation p.H405L 0.08 tolerated(0.07) benign(0.091) TCGA-50-5941-01 10 7804421 7804421 T A KIN Silent p.P339P 0.10 TCGA-50-5941-01 10 93220264 93220264 G T HECTD2 Missense_Mutation p.A117S 0.19 tolerated(0.25) benign(0.008) TCGA-50-5941-01 11 111864309 111864309 C A DIXDC1 Missense_Mutation p.H453Q 0.21 tolerated(1) benign(0) TCGA-50-5941-01 11 123886884 123886884 C T OR10G4 Silent p.D201D 0.21 TCGA-50-5941-01 11 123886904 123886904 G C OR10G4 Missense_Mutation p.G208A 0.23 tolerated(0.28) benign(0.181) TCGA-50-5941-01 11 21594744 21594745 - T NELL1 Frame_Shift_Ins p.C725Lfs*12 0.16 TCGA-50-5941-01 11 249047 249047 G T PSMD13 Missense_Mutation p.W257L 0.26 deleterious(0) possibly_damaging(0.73) TCGA-50-5941-01 11 30032822 30032822 G T KCNA4 Silent p.G468G 0.05 TCGA-50-5941-01 11 30352778 30352778 T G ARL14EP Missense_Mutation p.L95V 0.04 tolerated(0.07) benign(0.082) TCGA-50-5941-01 11 32413601 32413601 G T WT1 Missense_Mutation p.P450Q 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-50-5941-01 11 40136858 40136858 G A LRRC4C Missense_Mutation p.R329W 0.08 deleterious(0) probably_damaging(0.988) TCGA-50-5941-01 11 40137192 40137192 C G LRRC4C Silent p.P217P 0.16 TCGA-50-5941-01 11 4790230 4790230 G A OR51F1 Silent p.L306L 0.07 TCGA-50-5941-01 11 4843470 4843470 T G OR51F2 Missense_Mutation p.F285L 0.14 tolerated(0.93) probably_damaging(0.996) TCGA-50-5941-01 11 55032690 55032690 G T TRIM48 Missense_Mutation p.C120F 0.12 deleterious(0) probably_damaging(0.993) TCGA-50-5941-01 11 55322383 55322383 G A OR4C15 Missense_Mutation p.A201T 0.23 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-50-5941-01 11 55340091 55340091 G T OR4C16 Missense_Mutation p.S163I 0.20 tolerated(0.13) probably_damaging(0.931) TCGA-50-5941-01 11 55563864 55563864 T A OR5D14 Missense_Mutation p.V278E 0.04 deleterious(0) probably_damaging(0.987) TCGA-50-5941-01 11 55703071 55703071 G A OR5I1 Missense_Mutation p.S269F 0.16 deleterious(0) possibly_damaging(0.745) TCGA-50-5941-01 11 55735247 55735247 G A OR10AG1 Silent p.T231T 0.19 TCGA-50-5941-01 11 56020011 56020011 G T OR5T3 Missense_Mutation p.L112F 0.21 deleterious(0) probably_damaging(0.962) TCGA-50-5941-01 11 56143852 56143852 C A OR8U1 Missense_Mutation p.F251L 0.25 tolerated(0.07) probably_damaging(0.999) TCGA-50-5941-01 11 56468089 56468089 T A OR9G1 Missense_Mutation p.Y76N 0.13 tolerated(0.06) benign(0.031) TCGA-50-5941-01 11 6191076 6191076 C A OR52B2 Missense_Mutation p.V161F 0.26 tolerated(1) possibly_damaging(0.89) TCGA-50-5941-01 11 65635362 65635362 A T EFEMP2 Silent p.A380A 0.27 TCGA-50-5941-01 11 66272113 66272113 G C DPP3 Missense_Mutation p.G637R 0.10 deleterious(0) probably_damaging(0.991) TCGA-50-5941-01 11 67395479 67395479 T A NUDT8 Nonsense_Mutation p.K217* 0.21 TCGA-50-5941-01 11 7070935 7070935 G T NLRP14 Missense_Mutation p.Q719H 0.18 tolerated(0.14) benign(0.005) TCGA-50-5941-01 11 78147603 78147603 C A NARS2 3'UTR 0.19 TCGA-50-5941-01 11 89537473 89537473 G A TRIM49 Silent p.C55C 0.17 TCGA-50-5941-01 11 92534672 92534672 C G FAT3 Silent p.T2831T 0.56 TCGA-50-5941-01 12 102813420 102813420 C A IGF1 Missense_Mutation p.G90V 0.11 deleterious(0) probably_damaging(1) TCGA-50-5941-01 12 108600180 108600180 G T WSCD2 Missense_Mutation p.R166L 0.09 deleterious(0) probably_damaging(1) TCGA-50-5941-01 12 111296569 111296569 T G CCDC63 Missense_Mutation p.L120R 0.11 deleterious(0) probably_damaging(0.984) TCGA-50-5941-01 12 113344990 113344990 G C OAS1 Missense_Mutation p.S49T 0.06 tolerated(0.17) benign(0.051) TCGA-50-5941-01 12 116410034 116410034 A T MED13L Missense_Mutation p.S1913R 0.11 deleterious(0) probably_damaging(0.996) TCGA-50-5941-01 12 116421096 116421096 G A MED13L Missense_Mutation p.P1594L 0.12 deleterious(0.04) unknown(0) TCGA-50-5941-01 12 120214178 120214178 T A CIT Missense_Mutation p.Y624F 0.19 tolerated(0.57) benign(0.002) TCGA-50-5941-01 12 122684775 122684775 G T LRRC43 Missense_Mutation p.E463D 0.15 tolerated(1) benign(0.001) TCGA-50-5941-01 12 13715647 13715647 C T GRIN2B 3'UTR 0.14 TCGA-50-5941-01 12 15262005 15262005 G C RERG 3'UTR 0.14 TCGA-50-5941-01 12 20803388 20803388 G A PDE3A Missense_Mutation p.D927N 0.63 tolerated(0.07) possibly_damaging(0.456) TCGA-50-5941-01 12 20874923 20874923 G T SLCO1C1 Missense_Mutation p.D321Y 0.05 deleterious(0.01) benign(0.436) TCGA-50-5941-01 12 21428305 21428305 G C SLCO1A2 Missense_Mutation p.T555R 0.07 deleterious(0.01) possibly_damaging(0.821) TCGA-50-5941-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.38 deleterious(0.02) possibly_damaging(0.773) TCGA-50-5941-01 12 26493144 26493144 G C ITPR2 Missense_Mutation p.L2659V 0.11 tolerated(0.11) benign(0.172) TCGA-50-5941-01 12 28116578 28116578 G T PTHLH Nonsense_Mutation p.S76* 0.10 TCGA-50-5941-01 12 29614829 29614829 G T OVCH1-AS1 Intron 0.04 TCGA-50-5941-01 12 29669365 29669365 G A TMTC1 Missense_Mutation p.H742Y 0.44 tolerated(0.06) benign(0.217) TCGA-50-5941-01 12 32735271 32735271 G - FGD4 Frame_Shift_Del p.T158Lfs*4 0.26 TCGA-50-5941-01 12 41337491 41337491 G T CNTN1 Missense_Mutation p.G491V 0.07 deleterious(0) probably_damaging(1) TCGA-50-5941-01 12 41337492 41337492 G T CNTN1 Silent p.G491G 0.07 TCGA-50-5941-01 12 43826499 43826499 C G ADAMTS20 Missense_Mutation p.D946H 0.10 deleterious(0) probably_damaging(0.94) TCGA-50-5941-01 12 43925915 43925915 G T ADAMTS20 Missense_Mutation p.H179Q 0.18 tolerated(0.25) possibly_damaging(0.9) TCGA-50-5941-01 12 5022097 5022097 G C KCNA1 3'UTR 0.12 TCGA-50-5941-01 12 53877180 53877180 A - MAP3K12 Frame_Shift_Del p.I523Sfs*29 0.14 TCGA-50-5941-01 12 55688106 55688106 T C OR6C6 Missense_Mutation p.Q304R 0.10 tolerated_low_confidence(0.51) benign(0.002) TCGA-50-5941-01 12 62954583 62954583 G - MON2 Frame_Shift_Del p.A1242Lfs*23 0.14 TCGA-50-5941-01 12 63977659 63977659 T A DPY19L2 Intron 0.19 TCGA-50-5941-01 12 7639558 7639558 G T CD163 Nonsense_Mutation p.S692* 0.18 TCGA-50-5941-01 12 78452876 78452876 G T NAV3 Missense_Mutation p.V873L 0.09 tolerated(0.66) benign(0.075) TCGA-50-5941-01 12 78569175 78569175 G C NAV3 Missense_Mutation p.A1691P 0.05 deleterious(0.01) probably_damaging(0.972) TCGA-50-5941-01 12 85531700 85531700 G A LRRIQ1 Missense_Mutation p.D1428N 0.06 deleterious(0.02) benign(0.15) TCGA-50-5941-01 13 101756709 101756709 T A NALCN Missense_Mutation p.L942F 0.11 tolerated(0.06) possibly_damaging(0.734) TCGA-50-5941-01 13 101756712 101756712 G A NALCN Silent p.G941G 0.11 TCGA-50-5941-01 13 20024286 20024286 G C TPTE2 Silent p.T301T 0.08 TCGA-50-5941-01 13 31711466 31711466 C A HSPH1 Missense_Mutation p.D856Y 0.13 deleterious(0) possibly_damaging(0.779) TCGA-50-5941-01 13 43933986 43933986 C G ENOX1 Splice_Site p.X197_splice 0.05 TCGA-50-5941-01 13 48619794 48619794 A T NUDT15 Splice_Site p.X119_splice 0.06 TCGA-50-5941-01 13 53422253 53422253 C G PCDH8 Missense_Mutation p.D107H 0.10 deleterious(0) probably_damaging(0.962) TCGA-50-5941-01 13 76379705 76379705 A T LMO7 Missense_Mutation p.K102N 0.11 deleterious(0.01) benign(0.063) TCGA-50-5941-01 13 84453826 84453826 G A SLITRK1 Missense_Mutation p.S606F 0.20 tolerated(0.07) benign(0.141) TCGA-50-5941-01 13 86368638 86368638 G C SLITRK6 Missense_Mutation p.T669S 0.15 tolerated(0.26) benign(0.383) TCGA-50-5941-01 13 96519616 96519616 T G UGGT2 Missense_Mutation p.K1179Q 0.06 deleterious(0.03) possibly_damaging(0.548) TCGA-50-5941-01 13 99356687 99356687 T C SLC15A1 Silent p.T424T 0.09 TCGA-50-5941-01 13 99378453 99378453 G T SLC15A1 Missense_Mutation p.H57N 0.15 deleterious(0.01) possibly_damaging(0.566) TCGA-50-5941-01 13 99947695 99947695 T G GPR183 Missense_Mutation p.K235N 0.09 deleterious(0) probably_damaging(0.979) TCGA-50-5941-01 13 99947696 99947696 T A GPR183 Missense_Mutation p.K235I 0.09 deleterious(0) probably_damaging(0.988) TCGA-50-5941-01 14 102496195 102496195 G T DYNC1H1 Nonsense_Mutation p.E3228* 0.13 TCGA-50-5941-01 14 104462107 104462107 T A TDRD9 Silent p.I447I 0.15 TCGA-50-5941-01 14 105411915 105411915 C A AHNAK2 Missense_Mutation p.E3291D 0.03 possibly_damaging(0.533) TCGA-50-5941-01 14 106357575 106357575 C A IGHD6-19 Silent p.G1G 0.15 TCGA-50-5941-01 14 20389008 20389008 G T OR4K5 Missense_Mutation p.M81I 0.08 deleterious(0.01) probably_damaging(0.993) TCGA-50-5941-01 14 21424014 21424014 A T RNASE2 Missense_Mutation p.K28N 0.08 tolerated(0.3) benign(0.369) TCGA-50-5941-01 14 22265631 22265631 C T TRAV8-1 Missense_Mutation p.A14V 0.07 tolerated(0.54) benign(0.007) TCGA-50-5941-01 14 23876236 23876236 C A MYH6 Missense_Mutation p.G66V 0.05 deleterious(0) probably_damaging(0.96) TCGA-50-5941-01 14 23894495 23894495 G T MYH7 Missense_Mutation p.R807S 0.24 deleterious(0.01) probably_damaging(0.949) TCGA-50-5941-01 14 23898510 23898510 C G MYH7 Silent p.L395L 0.21 TCGA-50-5941-01 14 33293463 33293463 C A AKAP6 Missense_Mutation p.D2148E 0.09 tolerated_low_confidence(0.94) benign(0.005) TCGA-50-5941-01 14 56763705 56763705 C T PELI2 Missense_Mutation p.P362S 0.06 tolerated(0.07) probably_damaging(0.94) TCGA-50-5941-01 14 58934504 58934504 G A KIAA0586 Missense_Mutation p.S822N 0.14 tolerated(0.86) benign(0.004) TCGA-50-5941-01 14 59793303 59793303 A T DAAM1 Missense_Mutation p.D417V 0.09 deleterious(0.01) unknown(0) TCGA-50-5941-01 14 65008300 65008300 G A HSPA2 Missense_Mutation p.A245T 0.06 tolerated_low_confidence(0.09) benign(0.001) TCGA-50-5941-01 14 71209068 71209068 C A MAP3K9 Missense_Mutation p.D523Y 0.06 deleterious(0) benign(0.052) TCGA-50-5941-01 14 73029227 73029227 G A RGS6 3'Flank 0.12 TCGA-50-5941-01 14 74967652 74967652 G T LTBP2 Missense_Mutation p.R1801S 0.18 tolerated(0.15) possibly_damaging(0.892) TCGA-50-5941-01 14 75264581 75264581 G A YLPM1 Missense_Mutation p.G861R 0.10 probably_damaging(0.976) TCGA-50-5941-01 14 81244254 81244254 T A CEP128 Missense_Mutation p.Q783L 0.05 deleterious(0) possibly_damaging(0.782) TCGA-50-5941-01 15 20170347 20170347 C A IGHV1OR15-9 Missense_Mutation p.W3L 0.07 tolerated(0.07) benign(0.223) TCGA-50-5941-01 15 27725868 27725868 G T GABRG3 Missense_Mutation p.W216L 0.11 deleterious(0) benign(0.413) TCGA-50-5941-01 15 28474941 28474941 C A HERC2 Missense_Mutation p.W1621L 0.05 benign(0.015) TCGA-50-5941-01 15 33895447 33895447 G T RYR3 Silent p.V682V 0.08 TCGA-50-5941-01 15 33962753 33962753 C T RYR3 Silent p.C1952C 0.15 TCGA-50-5941-01 15 45564558 45564558 G C SLC28A2 Missense_Mutation p.A572P 0.14 deleterious(0.01) possibly_damaging(0.903) TCGA-50-5941-01 15 49030440 49030440 C A CEP152 3'UTR 0.14 TCGA-50-5941-01 15 66610849 66610849 G C DIS3L Missense_Mutation p.E353Q 0.10 tolerated(0.1) benign(0.097) TCGA-50-5941-01 15 71329524 71329524 G T LRRC49 Missense_Mutation p.K575N 0.05 deleterious(0) probably_damaging(0.986) TCGA-50-5941-01 15 89382144 89382144 C T ACAN Silent p.P107P 0.06 TCGA-50-5941-01 15 99678233 99678233 G A TTC23 Silent p.P442P 0.09 TCGA-50-5941-01 16 1391159 1391159 C T BAIAP3 Silent p.V201V 0.06 TCGA-50-5941-01 16 19656206 19656206 A T C16orf62 Splice_Site p.X711_splice 0.05 TCGA-50-5941-01 16 24580932 24580932 T A RBBP6 Nonsense_Mutation p.L974* 0.16 TCGA-50-5941-01 16 30038006 30038006 C T FAM57B Missense_Mutation p.R123H 0.15 deleterious(0.01) possibly_damaging(0.863) TCGA-50-5941-01 16 30536017 30536017 C A ZNF768 Nonsense_Mutation p.E482* 0.15 TCGA-50-5941-01 16 30998216 30998216 G T HSD3B7 Missense_Mutation p.G196V 0.19 deleterious(0) probably_damaging(0.999) TCGA-50-5941-01 16 57054740 57054740 C T NLRC5 Missense_Mutation p.T39M 0.06 tolerated(1) benign(0.002) TCGA-50-5941-01 16 78064459 78064459 C A CLEC3A Silent p.P114P 0.09 TCGA-50-5941-01 16 83378559 83378559 G C CDH13 Silent p.P290P 0.15 TCGA-50-5941-01 16 84212613 84212613 G T TAF1C Silent p.S848S 0.14 TCGA-50-5941-01 16 84779061 84779061 A G USP10 Missense_Mutation p.D325G 0.14 tolerated(0.06) benign(0.097) TCGA-50-5941-01 17 10323440 10323440 A C MYH8 Missense_Mutation p.D35E 0.23 tolerated(0.05) benign(0.221) TCGA-50-5941-01 17 12883520 12883520 G T ARHGAP44 Missense_Mutation p.A637S 0.16 tolerated(0.2) benign(0.001) TCGA-50-5941-01 17 26110042 26110042 G A NOS2 Silent p.L186L 0.10 TCGA-50-5941-01 17 32961989 32961989 G A TMEM132E Nonsense_Mutation p.W530* 0.09 TCGA-50-5941-01 17 3343342 3343342 C A SPATA22 3'UTR 0.24 TCGA-50-5941-01 17 33935316 33935316 G T AP2B1 Silent p.V145V 0.23 TCGA-50-5941-01 17 39994098 39994098 A C KLHL10 5'UTR 0.09 TCGA-50-5941-01 17 39994152 39994152 G C KLHL10 5'UTR 0.06 TCGA-50-5941-01 17 42853507 42853507 G T ADAM11 Missense_Mutation p.G500C 0.07 deleterious(0) probably_damaging(0.957) TCGA-50-5941-01 17 49156969 49156969 T A SPAG9 Nonsense_Mutation p.K134* 0.18 TCGA-50-5941-01 17 54431318 54431318 G T ANKFN1 Missense_Mutation p.G174V 0.23 deleterious(0) probably_damaging(0.985) TCGA-50-5941-01 17 6021461 6021461 G C WSCD1 Missense_Mutation p.C443S 0.38 tolerated(0.37) probably_damaging(0.944) TCGA-50-5941-01 17 62499955 62499958 TGAT - DDX5 Frame_Shift_Del p.N157Ifs*5 0.16 TCGA-50-5941-01 17 663352 663352 C G GLOD4 3'UTR 0.17 TCGA-50-5941-01 17 71346482 71346482 T A SDK2 Missense_Mutation p.S1978C 0.41 deleterious(0.04) benign(0.379) TCGA-50-5941-01 17 72301559 72301559 G T DNAI2 Nonsense_Mutation p.E397* 0.12 TCGA-50-5941-01 17 77926534 77926534 C A TBC1D16 Missense_Mutation p.R288L 0.12 tolerated(0.13) benign(0.414) TCGA-50-5941-01 17 80045689 80045689 G A FASN Missense_Mutation p.P972L 0.24 tolerated(0.39) benign(0.001) TCGA-50-5941-01 18 14851954 14851954 T G ANKRD30B Missense_Mutation p.D1218E 0.17 tolerated(0.06) probably_damaging(0.971) TCGA-50-5941-01 18 22805060 22805060 G T ZNF521 Missense_Mutation p.S941Y 0.27 deleterious(0) probably_damaging(0.987) TCGA-50-5941-01 18 25565006 25565006 C A CDH2 Missense_Mutation p.G723C 0.23 deleterious(0.01) probably_damaging(0.994) TCGA-50-5941-01 18 29437775 29437775 G C TRAPPC8 Silent p.P972P 0.25 TCGA-50-5941-01 18 47796406 47796406 T C MBD1 Intron 0.31 TCGA-50-5941-01 18 5415909 5415909 G A EPB41L3 Missense_Mutation p.P659S 0.26 deleterious(0) probably_damaging(0.987) TCGA-50-5941-01 18 56620993 56620993 G C ZNF532 Missense_Mutation p.D1038H 0.05 deleterious(0.01) probably_damaging(0.928) TCGA-50-5941-01 19 14040397 14040397 G C CC2D1A Missense_Mutation p.Q878H 0.25 tolerated(0.34) possibly_damaging(0.905) TCGA-50-5941-01 19 15052637 15052637 T A OR7C2 Missense_Mutation p.L113M 0.21 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-50-5941-01 19 15839525 15839525 C T OR10H2 Silent p.A224A 0.05 TCGA-50-5941-01 19 22155045 22155045 C G ZNF208 Missense_Mutation p.V931L 0.11 tolerated(0.59) unknown(0) TCGA-50-5941-01 19 29698810 29698810 G C UQCRFS1 Missense_Mutation p.S157C 0.04 deleterious(0.01) possibly_damaging(0.674) TCGA-50-5941-01 19 30935025 30935025 G T ZNF536 Missense_Mutation p.G186C 0.16 deleterious(0.02) probably_damaging(1) TCGA-50-5941-01 19 31769436 31769436 C G TSHZ3 Missense_Mutation p.K421N 0.11 deleterious(0) probably_damaging(0.931) TCGA-50-5941-01 19 37678134 37678134 C G ZNF585B Missense_Mutation p.W102S 0.14 tolerated(0.2) benign(0.015) TCGA-50-5941-01 19 37678135 37678135 A T ZNF585B Missense_Mutation p.W102R 0.15 tolerated(0.2) benign(0.001) TCGA-50-5941-01 19 37854259 37854259 G T HKR1 Missense_Mutation p.G521V 0.07 deleterious(0.02) possibly_damaging(0.889) TCGA-50-5941-01 19 39008033 39008033 T C RYR1 Silent p.C3240C 0.06 TCGA-50-5941-01 19 43268239 43268239 G T PSG8 Missense_Mutation p.Q87K 0.19 tolerated(0.22) benign(0.001) TCGA-50-5941-01 19 43348630 43348630 G C PSG10P RNA 0.06 TCGA-50-5941-01 19 46094546 46094546 C A GPR4 Silent p.P193P 0.06 TCGA-50-5941-01 19 49110448 49110448 C A SPACA4 Nonsense_Mutation p.C71* 0.10 TCGA-50-5941-01 19 49225186 49225186 A C RASIP1 Missense_Mutation p.Y873D 0.13 deleterious(0) probably_damaging(1) TCGA-50-5941-01 19 51380292 51380292 G T KLK2 Intron 0.22 TCGA-50-5941-01 19 51499377 51499377 C T KLK8 Missense_Mutation p.V286I 0.08 deleterious(0.02) benign(0.185) TCGA-50-5941-01 19 53667774 53667774 T A ZNF665 Missense_Mutation p.N657Y 0.22 deleterious(0.02) possibly_damaging(0.647) TCGA-50-5941-01 19 55021835 55021835 T G LAIR2 3'UTR 0.23 TCGA-50-5941-01 19 9577253 9577253 G T ZNF560 Missense_Mutation p.H790Q 0.22 deleterious(0) benign(0.004) TCGA-50-5941-01 1 103428231 103428231 G T COL11A1 Missense_Mutation p.A1001D 0.17 unknown(0) TCGA-50-5941-01 1 109284551 109284551 G T FNDC7 3'UTR 0.42 TCGA-50-5941-01 1 114682455 114682455 A G SYT6 Silent p.S13S 0.05 TCGA-50-5941-01 1 117127643 117127643 C A IGSF3 Silent p.G844G 0.18 TCGA-50-5941-01 1 117504136 117504136 A G PTGFRN Silent p.T495T 0.20 TCGA-50-5941-01 1 120298057 120298057 G C HMGCS2 Missense_Mutation p.L394V 0.21 deleterious(0.05) probably_damaging(0.997) TCGA-50-5941-01 1 147381011 147381011 G T GJA8 Missense_Mutation p.G310V 0.17 tolerated(0.2) benign(0.405) TCGA-50-5941-01 1 148932835 148932835 C A RP11-14N7.2 RNA 0.07 TCGA-50-5941-01 1 152276020 152276020 G T FLG Missense_Mutation p.S3781Y 0.24 unknown(0) TCGA-50-5941-01 1 152325492 152325492 G C FLG2 Missense_Mutation p.H1590Q 0.13 benign(0.423) TCGA-50-5941-01 1 152648533 152648533 C G LCE2C Silent p.P14P 0.16 TCGA-50-5941-01 1 153932916 153932916 G A SLC39A1 Silent p.C211C 0.06 TCGA-50-5941-01 1 156223237 156223237 T A SMG5 Intron 0.24 TCGA-50-5941-01 1 157805847 157805847 C A CD5L Missense_Mutation p.G52C 0.15 deleterious(0) probably_damaging(0.998) TCGA-50-5941-01 1 158627350 158627350 G T SPTA1 Missense_Mutation p.L908M 0.15 deleterious(0.05) probably_damaging(1) TCGA-50-5941-01 1 158632506 158632506 G C SPTA1 Missense_Mutation p.T817S 0.05 tolerated(0.25) benign(0.114) TCGA-50-5941-01 1 158670176 158670176 C T OR6K2 Silent p.R89R 0.15 TCGA-50-5941-01 1 159275977 159275977 G T FCER1A Silent p.T177T 0.27 TCGA-50-5941-01 1 160388876 160388876 A T VANGL2 Nonsense_Mutation p.K93* 0.04 TCGA-50-5941-01 1 171250038 171250038 C - FMO1 Frame_Shift_Del p.P248Qfs*5 0.09 TCGA-50-5941-01 1 176811630 176811630 G T PAPPA2 3'UTR 0.13 TCGA-50-5941-01 1 176863929 176863929 T A ASTN1 Missense_Mutation p.R903S 0.20 tolerated(0.18) benign(0.055) TCGA-50-5941-01 1 183511555 183511557 ACA - SMG7 Intron 0.17 TCGA-50-5941-01 1 186286693 186286693 C G TPR Missense_Mutation p.Q2287H 0.17 possibly_damaging(0.764) TCGA-50-5941-01 1 196928191 196928191 C A CFHR2 Missense_Mutation p.P265H 0.15 deleterious(0) probably_damaging(0.999) TCGA-50-5941-01 1 204588512 204588512 G T LRRN2 Silent p.A203A 0.19 TCGA-50-5941-01 1 209788495 209788495 C A LAMB3 3'UTR 0.27 TCGA-50-5941-01 1 220752872 220752872 G T MARK1 Missense_Mutation p.L76F 0.15 deleterious(0) probably_damaging(1) TCGA-50-5941-01 1 222695919 222695919 C A HHIPL2 3'UTR 0.12 TCGA-50-5941-01 1 227171593 227171593 A G ADCK3 Intron 0.15 TCGA-50-5941-01 1 228471364 228471364 G T OBSCN Missense_Mutation p.E3395D 0.33 benign(0.063) TCGA-50-5941-01 1 232172460 232172460 G A DISC1 Silent p.Q816Q 0.13 TCGA-50-5941-01 1 233394396 233394396 G A PCNXL2 Silent p.T404T 0.05 TCGA-50-5941-01 1 235860531 235860531 G A LYST Silent p.Y3472Y 0.12 TCGA-50-5941-01 1 237551440 237551440 T A RYR2 Missense_Mutation p.C244S 0.22 possibly_damaging(0.498) TCGA-50-5941-01 1 240656352 240656352 G T GREM2 Missense_Mutation p.P142T 0.21 deleterious(0) probably_damaging(0.928) TCGA-50-5941-01 1 242383324 242383324 C A PLD5 Missense_Mutation p.G234V 0.15 deleterious(0) probably_damaging(0.961) TCGA-50-5941-01 1 242383405 242383405 G A PLD5 Missense_Mutation p.T207M 0.23 deleterious(0.04) benign(0.009) TCGA-50-5941-01 1 242428646 242428646 T A PLD5 Missense_Mutation p.K200N 0.07 tolerated(0.34) benign(0.011) TCGA-50-5941-01 1 245850143 245850143 C A KIF26B Missense_Mutation p.S1286R 0.17 deleterious(0) unknown(0) TCGA-50-5941-01 1 246927551 246927551 G A SCCPDH Missense_Mutation p.D332N 0.11 tolerated(0.12) benign(0.026) TCGA-50-5941-01 1 247588044 247588044 C A NLRP3 Silent p.A433A 0.29 TCGA-50-5941-01 1 247902751 247902751 G C OR14K1 Missense_Mutation p.A279P 0.20 deleterious(0) possibly_damaging(0.8) TCGA-50-5941-01 1 248059379 248059379 T A OR2W3 Missense_Mutation p.L164Q 0.19 deleterious(0) probably_damaging(0.914) TCGA-50-5941-01 1 248402653 248402653 T C OR2M4 Silent p.C141C 0.11 TCGA-50-5941-01 1 248550949 248550949 C T OR2T6 Missense_Mutation p.L14F 0.32 tolerated(0.1) benign(0.02) TCGA-50-5941-01 1 40961204 40961204 G A ZFP69 Missense_Mutation p.E352K 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-50-5941-01 1 47489621 47489621 C A CYP4X1 Silent p.R44R 0.15 TCGA-50-5941-01 1 52403027 52403027 T A RAB3B Missense_Mutation p.M96L 0.11 deleterious(0) probably_damaging(0.919) TCGA-50-5941-01 1 62915921 62915921 G A USP1 Missense_Mutation p.D543N 0.07 tolerated(0.07) probably_damaging(1) TCGA-50-5941-01 1 9416202 9416202 G T SPSB1 Silent p.T84T 0.16 TCGA-50-5941-01 20 11898955 11898955 G T BTBD3 Missense_Mutation p.C11F 0.19 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-50-5941-01 20 2384386 2384386 A G TGM6 Missense_Mutation p.K418R 0.17 tolerated(0.9) benign(0.011) TCGA-50-5941-01 20 24565510 24565510 A G SYNDIG1 Missense_Mutation p.T167A 0.13 deleterious(0.01) possibly_damaging(0.78) TCGA-50-5941-01 20 30662469 30662469 G T HCK Nonsense_Mutation p.E125* 0.12 TCGA-50-5941-01 20 31622623 31622623 C G BPIFB6 Missense_Mutation p.N119K 0.27 tolerated(0.12) benign(0.331) TCGA-50-5941-01 20 34022074 34022074 C T GDF5 Missense_Mutation p.R380Q 0.24 deleterious(0.01) benign(0.178) TCGA-50-5941-01 20 44505598 44505598 C T ZSWIM3 Missense_Mutation p.T134I 0.16 tolerated(0.5) benign(0) TCGA-50-5941-01 20 45905216 45905216 C A ZMYND8 Missense_Mutation p.G441V 0.10 deleterious_low_confidence(0) possibly_damaging(0.784) TCGA-50-5941-01 20 45918993 45918993 C A ZMYND8 Missense_Mutation p.C229F 0.12 deleterious(0) possibly_damaging(0.673) TCGA-50-5941-01 20 47268039 47268039 G T PREX1 Missense_Mutation p.H850Q 0.30 tolerated(0.06) benign(0.008) TCGA-50-5941-01 20 47592674 47592674 T A ARFGEF2 Missense_Mutation p.D632E 0.14 deleterious(0.02) benign(0.271) TCGA-50-5941-01 20 57829409 57829409 T A ZNF831 Missense_Mutation p.S1549T 0.19 tolerated(0.13) benign(0.19) TCGA-50-5941-01 20 57896227 57896227 C A EDN3 Missense_Mutation p.T174N 0.06 deleterious(0.02) possibly_damaging(0.552) TCGA-50-5941-01 20 58571518 58571518 A G CDH26 Intron 0.19 TCGA-50-5941-01 20 62187726 62187726 C A C20orf195 Nonsense_Mutation p.S237* 0.23 TCGA-50-5941-01 20 744476 744476 A T SLC52A3 Missense_Mutation p.C247S 0.15 tolerated(0.76) benign(0.011) TCGA-50-5941-01 20 9496977 9496977 G C LAMP5 Silent p.S148S 0.07 TCGA-50-5941-01 21 10934071 10934071 G T TPTE Silent p.I302I 0.05 TCGA-50-5941-01 21 31971137 31971137 T A KRTAP6-2 Silent p.G19G 0.12 TCGA-50-5941-01 21 35229038 35229038 A T ITSN1 Splice_Site p.X1221_splice 0.21 TCGA-50-5941-01 21 38537963 38537963 A T TTC3 Silent p.A1149A 0.15 TCGA-50-5941-01 21 44524456 44524456 G A U2AF1 Missense_Mutation p.S34F 0.26 deleterious(0) possibly_damaging(0.835) TCGA-50-5941-01 21 45220427 45220427 G T RRP1 Silent p.L307L 0.13 TCGA-50-5941-01 21 47801665 47801665 G T PCNT Silent p.R1074R 0.04 TCGA-50-5941-01 22 22892596 22892596 C T PRAME Missense_Mutation p.E169K 0.08 tolerated(0.82) benign(0.006) TCGA-50-5941-01 22 31487707 31487707 T A SMTN Missense_Mutation p.S502R 0.12 deleterious(0) possibly_damaging(0.866) TCGA-50-5941-01 22 45929753 45929753 G T FBLN1 Missense_Mutation p.E253D 0.07 deleterious(0.01) possibly_damaging(0.874) TCGA-50-5941-01 22 50167916 50167916 C A BRD1 Missense_Mutation p.G1048W 0.13 deleterious(0) probably_damaging(0.974) TCGA-50-5941-01 2 103148979 103148979 G T SLC9A4 Silent p.V743V 0.30 TCGA-50-5941-01 2 109380702 109380702 G T RANBP2 Missense_Mutation p.R1236L 0.07 deleterious(0) possibly_damaging(0.853) TCGA-50-5941-01 2 109382540 109382540 G A RANBP2 Missense_Mutation p.A1849T 0.06 tolerated_low_confidence(0.21) benign(0.013) TCGA-50-5941-01 2 128941255 128941255 A G UGGT1 Silent p.L1417L 0.15 TCGA-50-5941-01 2 131904333 131904333 T C PLEKHB2 Missense_Mutation p.F227S 0.13 deleterious(0) probably_damaging(0.999) TCGA-50-5941-01 2 132277131 132277131 G T AC093838.4 RNA 0.19 TCGA-50-5941-01 2 136567022 136567022 C A LCT Missense_Mutation p.M965I 0.11 tolerated(0.21) benign(0.03) TCGA-50-5941-01 2 137814464 137814464 C T THSD7B Missense_Mutation p.A205V 0.19 tolerated(0.56) possibly_damaging(0.893) TCGA-50-5941-01 2 140997093 140997094 - A LRP1B Frame_Shift_Ins p.A4445Cfs*24 0.20 TCGA-50-5941-01 2 141747165 141747165 T A LRP1B Missense_Mutation p.R902S 0.16 possibly_damaging(0.899) TCGA-50-5941-01 2 141806572 141806573 TC - LRP1B Frame_Shift_Del p.E591Nfs*6 0.08 TCGA-50-5941-01 2 1520666 1520666 C A TPO Missense_Mutation p.L844I 0.15 tolerated(0.06) benign(0.275) TCGA-50-5941-01 2 152472566 152472566 C G NEB Missense_Mutation p.D3747H 0.06 probably_damaging(1) TCGA-50-5941-01 2 154801049 154801049 T - GALNT13 Frame_Shift_Del p.S14Rfs*2 0.10 TCGA-50-5941-01 2 160755507 160755507 C A LY75-CD302 Missense_Mutation p.W53L 0.21 tolerated(0.27) probably_damaging(0.954) TCGA-50-5941-01 2 160958301 160958301 A G ITGB6 Silent p.N771N 0.18 TCGA-50-5941-01 2 165946747 165946747 A C SCN3A Missense_Mutation p.S1972R 0.12 deleterious(0.05) probably_damaging(0.998) TCGA-50-5941-01 2 166535953 166535953 A - CSRNP3 Frame_Shift_Del p.A484Qfs*17 0.17 TCGA-50-5941-01 2 168102059 168102059 C G XIRP2 Missense_Mutation p.S1386C 0.26 probably_damaging(0.985) TCGA-50-5941-01 2 168114688 168114688 G A XIRP2 3'UTR 0.12 TCGA-50-5941-01 2 17953925 17953925 A G GEN1 Missense_Mutation p.N276S 0.05 tolerated(0.59) benign(0.01) TCGA-50-5941-01 2 179614245 179614245 A G TTN Intron 0.07 TCGA-50-5941-01 2 179632810 179632810 C A TTN Missense_Mutation p.C3079F 0.14 TCGA-50-5941-01 2 179736949 179736949 T C CCDC141 Missense_Mutation p.S664G 0.08 tolerated(0.1) benign(0.012) TCGA-50-5941-01 2 189870935 189870935 A T COL3A1 Missense_Mutation p.N1015Y 0.16 probably_damaging(0.999) TCGA-50-5941-01 2 197674047 197674047 G T C2orf66 Missense_Mutation p.P22H 0.07 tolerated(0.58) benign(0.239) TCGA-50-5941-01 2 210887823 210887823 A T KANSL1L Missense_Mutation p.D938E 0.11 tolerated(0.34) benign(0.007) TCGA-50-5941-01 2 21233331 21233331 G C APOB Missense_Mutation p.H2137D 0.11 benign(0.002) TCGA-50-5941-01 2 238249699 238249699 C A COL6A3 Missense_Mutation p.M2620I 0.22 unknown(0) TCGA-50-5941-01 2 240969109 240969109 G T OR6B2 Silent p.T246T 0.07 TCGA-50-5941-01 2 242741367 242741367 C A GAL3ST2 Silent p.L97L 0.18 TCGA-50-5941-01 2 27121559 27121559 C G DPYSL5 Missense_Mutation p.D64E 0.16 deleterious(0.01) probably_damaging(0.984) TCGA-50-5941-01 2 40342547 40342547 C A SLC8A1 Missense_Mutation p.G923V 0.19 tolerated(0.29) benign(0.034) TCGA-50-5941-01 2 44079912 44079912 C A ABCG8 Missense_Mutation p.T290N 0.11 tolerated(0.43) benign(0.14) TCGA-50-5941-01 2 44566424 44566424 C A PREPL Silent p.V277V 0.10 TCGA-50-5941-01 2 49195971 49195971 A G FSHR Silent p.N240N 0.05 TCGA-50-5941-01 2 60998766 60998766 G T PAPOLG Splice_Site p.X202_splice 0.21 TCGA-50-5941-01 2 61149634 61149634 G C REL Missense_Mutation p.L608F 0.12 tolerated_low_confidence(0.12) possibly_damaging(0.548) TCGA-50-5941-01 2 73717864 73717864 A T ALMS1 Missense_Mutation p.Q2925H 0.08 probably_damaging(0.916) TCGA-50-5941-01 2 79385513 79385513 A - REG3A Frame_Shift_Del p.L91Rfs*2 0.15 TCGA-50-5941-01 2 90248937 90248937 C T IGKV1D-43 Silent p.P6P 0.10 TCGA-50-5941-01 3 10107090 10107090 G T FANCD2 Silent p.P727P 0.13 TCGA-50-5941-01 3 101540808 101540808 G T NXPE3 3'UTR 0.17 TCGA-50-5941-01 3 114069321 114069321 T A ZBTB20 Missense_Mutation p.Q535L 0.18 tolerated(0.09) possibly_damaging(0.775) TCGA-50-5941-01 3 120053875 120053875 C T LRRC58 Silent p.L247L 0.10 TCGA-50-5941-01 3 121137243 121137243 G C STXBP5L Missense_Mutation p.G1120R 0.10 deleterious(0) probably_damaging(0.98) TCGA-50-5941-01 3 121217437 121217437 C T POLQ Missense_Mutation p.M680I 0.09 deleterious(0.01) possibly_damaging(0.643) TCGA-50-5941-01 3 142123810 142123810 C T XRN1 Missense_Mutation p.E608K 0.07 tolerated(0.43) benign(0.004) TCGA-50-5941-01 3 15677046 15677046 G T BTD Nonsense_Mutation p.E54* 0.13 TCGA-50-5941-01 3 180320033 180320033 C T TTC14 5'UTR 0.21 TCGA-50-5941-01 3 184910894 184910894 G C EHHADH Missense_Mutation p.T431S 0.09 deleterious(0.01) possibly_damaging(0.603) TCGA-50-5941-01 3 186395691 186395691 A G HRG 3'UTR 0.14 TCGA-50-5941-01 3 186953545 186953545 G T MASP1 Missense_Mutation p.S705Y 0.13 tolerated(1) benign(0.012) TCGA-50-5941-01 3 33174052 33174052 G C CRTAP Missense_Mutation p.D310H 0.08 deleterious(0) probably_damaging(0.99) TCGA-50-5941-01 3 38739040 38739040 C T SCN10A Missense_Mutation p.D1891N 0.15 tolerated(0.37) benign(0.001) TCGA-50-5941-01 3 38888217 38888217 C T SCN11A Missense_Mutation p.G1782R 0.11 deleterious_low_confidence(0.05) benign(0.404) TCGA-50-5941-01 3 40352529 40352529 T A EIF1B Silent p.L59L 0.11 TCGA-50-5941-01 3 47164413 47164414 - C SETD2 Frame_Shift_Ins p.N571Kfs*10 0.11 TCGA-50-5941-01 3 47603999 47603999 G C CSPG5 3'UTR 0.12 TCGA-50-5941-01 3 47956349 47956349 G C MAP4 Missense_Mutation p.P653A 0.11 tolerated(0.06) possibly_damaging(0.49) TCGA-50-5941-01 3 58120479 58120479 C A FLNB Missense_Mutation p.L1582M 0.08 tolerated(0.1) possibly_damaging(0.579) TCGA-50-5941-01 3 65342407 65342407 C G MAGI1 Missense_Mutation p.K1345N 0.18 tolerated(0.09) benign(0.173) TCGA-50-5941-01 3 73433087 73433087 G T PDZRN3 Missense_Mutation p.A877D 0.10 deleterious(0) probably_damaging(1) TCGA-50-5941-01 3 87017813 87017813 G A VGLL3 Silent p.T288T 0.15 TCGA-50-5941-01 3 97983997 97983997 A T OR5H6 Missense_Mutation p.E290V 0.07 tolerated(0.51) benign(0.002) TCGA-50-5941-01 4 115997569 115997569 G T NDST4 Silent p.P208P 0.15 TCGA-50-5941-01 4 128564978 128564978 C T INTU Missense_Mutation p.T150I 0.13 tolerated(0.18) benign(0.005) TCGA-50-5941-01 4 155489541 155489541 G A FGB Missense_Mutation p.E243K 0.05 deleterious(0.01) benign(0.359) TCGA-50-5941-01 4 165962701 165962701 C T TRIM60 3'UTR 0.21 TCGA-50-5941-01 4 174292240 174292240 G T SAP30 5'UTR 0.15 TCGA-50-5941-01 4 23833297 23833297 G T PPARGC1A Missense_Mutation p.D104E 0.18 tolerated(0.07) probably_damaging(0.998) TCGA-50-5941-01 4 39000506 39000506 G C TMEM156 Missense_Mutation p.L38V 0.24 deleterious(0.04) probably_damaging(0.981) TCGA-50-5941-01 4 47765481 47765481 G T CORIN Missense_Mutation p.L178I 0.12 deleterious(0) probably_damaging(0.999) TCGA-50-5941-01 4 47840020 47840020 C T CORIN 5'Flank 0.06 TCGA-50-5941-01 4 47900034 47900034 C A NFXL1 Missense_Mutation p.C385F 0.09 deleterious(0) probably_damaging(0.999) TCGA-50-5941-01 4 52926965 52926965 G T SPATA18 Missense_Mutation p.V71L 0.19 deleterious(0.03) benign(0.031) TCGA-50-5941-01 4 68504691 68504691 T C UBA6 Missense_Mutation p.D569G 0.06 deleterious(0) probably_damaging(0.991) TCGA-50-5941-01 4 68938203 68938203 G T TMPRSS11F Missense_Mutation p.P118T 0.13 deleterious(0.03) probably_damaging(1) TCGA-50-5941-01 4 69416514 69416514 C A UGT2B17 Silent p.A398A 0.14 TCGA-50-5941-01 4 85750188 85750188 C A WDFY3 Nonsense_Mutation p.G309* 0.13 TCGA-50-5941-01 4 94690466 94690466 A T GRID2 Missense_Mutation p.K822N 0.07 tolerated(0.16) benign(0.008) TCGA-50-5941-01 4 96124011 96124011 C A UNC5C Silent p.L669L 0.15 TCGA-50-5941-01 5 120021828 120021828 C T PRR16 Silent p.I90I 0.07 TCGA-50-5941-01 5 127686665 127686665 G T FBN2 Missense_Mutation p.Q903K 0.13 tolerated(0.47) benign(0.206) TCGA-50-5941-01 5 127686666 127686666 G T FBN2 Silent p.I902I 0.12 TCGA-50-5941-01 5 128862031 128862031 A T ADAMTS19 Missense_Mutation p.Y317F 0.06 tolerated(0.57) benign(0.222) TCGA-50-5941-01 5 135549258 135549258 G T TRPC7 Missense_Mutation p.S818R 0.20 deleterious(0) probably_damaging(0.994) TCGA-50-5941-01 5 13923425 13923425 G A DNAH5 Silent p.D134D 0.15 TCGA-50-5941-01 5 139943781 139943781 C T APBB3 Splice_Site p.X17_splice 0.33 TCGA-50-5941-01 5 140186910 140186910 C A PCDHA4 Silent p.G46G 0.19 TCGA-50-5941-01 5 140189058 140189058 G T PCDHA4 Missense_Mutation p.E762D 0.23 tolerated_low_confidence(0.07) possibly_damaging(0.463) TCGA-50-5941-01 5 140250586 140250586 C A PCDHA11 Missense_Mutation p.T633K 0.17 deleterious_low_confidence(0.01) benign(0.233) TCGA-50-5941-01 5 140589623 140589623 G T PCDHB12 Missense_Mutation p.V382F 0.22 deleterious_low_confidence(0.01) benign(0.114) TCGA-50-5941-01 5 140774087 140774087 A G PCDHGA8 Silent p.T569T 0.05 TCGA-50-5941-01 5 149215939 149215939 G T PPARGC1B Missense_Mutation p.G641C 0.06 deleterious(0) possibly_damaging(0.56) TCGA-50-5941-01 5 156469677 156469677 C A HAVCR1 Silent p.V266V 0.09 TCGA-50-5941-01 5 156589905 156589905 C A FAM71B Silent p.A457A 0.16 TCGA-50-5941-01 5 156819862 156819862 C T CYFIP2 Missense_Mutation p.R1180W 0.04 deleterious(0) probably_damaging(0.999) TCGA-50-5941-01 5 161580234 161580234 G T GABRG2 Nonsense_Mutation p.E470* 0.20 TCGA-50-5941-01 5 167642143 167642143 C A TENM2 Missense_Mutation p.S1315Y 0.14 tolerated(0.12) possibly_damaging(0.702) TCGA-50-5941-01 5 169446071 169446071 A C DOCK2 Missense_Mutation p.M1114L 0.17 deleterious(0.03) benign(0.177) TCGA-50-5941-01 5 175110816 175110816 C G HRH2 Missense_Mutation p.P194A 0.07 deleterious(0) probably_damaging(1) TCGA-50-5941-01 5 26881273 26881273 T A CDH9 Missense_Mutation p.Y781F 0.19 tolerated(0.1) probably_damaging(0.992) TCGA-50-5941-01 5 41186174 41186174 C G C6 Missense_Mutation p.E242Q 0.12 tolerated(0.82) benign(0.026) TCGA-50-5941-01 5 41870398 41870398 C T OXCT1 Silent p.G21G 0.13 TCGA-50-5941-01 5 65008852 65008852 G - SGTB Frame_Shift_Del p.P47Qfs*6 0.13 TCGA-50-5941-01 5 70806102 70806102 G T BDP1 Missense_Mutation p.E1061D 0.08 tolerated(0.15) benign(0.014) TCGA-50-5941-01 6 10529565 10529565 A G GCNT2 Missense_Mutation p.K141E 0.11 tolerated(0.7) benign(0.002) TCGA-50-5941-01 6 110300445 110300445 C A GPR6 Missense_Mutation p.L44I 0.33 tolerated_low_confidence(0.42) benign(0.364) TCGA-50-5941-01 6 114378649 114378649 C T HS3ST5 Silent p.K271K 0.14 TCGA-50-5941-01 6 132966566 132966566 G C TAAR1 Missense_Mutation p.L193V 0.15 tolerated(0.44) benign(0.029) TCGA-50-5941-01 6 13802537 13802537 C T MCUR1 Missense_Mutation p.V193I 0.11 tolerated(0.12) possibly_damaging(0.534) TCGA-50-5941-01 6 149275032 149275032 A G UST Missense_Mutation p.T158A 0.12 tolerated(0.26) benign(0.05) TCGA-50-5941-01 6 153043513 153043513 G T MYCT1 3'UTR 0.20 TCGA-50-5941-01 6 158882747 158882747 G T TULP4 Missense_Mutation p.D338Y 0.25 deleterious(0.01) possibly_damaging(0.701) TCGA-50-5941-01 6 159653518 159653518 C A FNDC1 Missense_Mutation p.H658Q 0.20 tolerated_low_confidence(0.18) unknown(0) TCGA-50-5941-01 6 161032655 161032655 G T LPA Missense_Mutation p.Q848K 0.12 deleterious(0.01) possibly_damaging(0.603) TCGA-50-5941-01 6 161173185 161173185 C A PLG Missense_Mutation p.P722T 0.23 deleterious(0) probably_damaging(1) TCGA-50-5941-01 6 18222173 18222173 G - KDM1B Frame_Shift_Del p.A576Hfs*3 0.12 TCGA-50-5941-01 6 29274833 29274833 G T OR14J1 Missense_Mutation p.A123S 0.28 deleterious(0.01) benign(0.356) TCGA-50-5941-01 6 29323943 29323943 A G OR5V1 Silent p.T10T 0.36 TCGA-50-5941-01 6 29638999 29638999 G T MOG Intron 0.14 TCGA-50-5941-01 6 29691171 29691171 A T HLA-F 5'Flank 0.17 TCGA-50-5941-01 6 30121598 30121598 T G TRIM10 3'UTR 0.07 TCGA-50-5941-01 6 30920784 30920784 C G DPCR1 Missense_Mutation p.Q1358E 0.17 deleterious(0) possibly_damaging(0.488) TCGA-50-5941-01 6 32169207 32169207 C G NOTCH4 Missense_Mutation p.E1276Q 0.08 deleterious(0.02) benign(0.055) TCGA-50-5941-01 6 32181503 32181503 C A NOTCH4 Missense_Mutation p.G761V 0.14 deleterious(0) probably_damaging(1) TCGA-50-5941-01 6 32903146 32903146 G A HLA-DMB Missense_Mutation p.P250S 0.08 tolerated(0.29) benign(0.105) TCGA-50-5941-01 6 4125453 4125453 C A C6orf201 Intron 0.25 TCGA-50-5941-01 6 51524526 51524526 C T PKHD1 Silent p.R3466R 0.07 TCGA-50-5941-01 6 52701131 52701131 C G GSTA5 Missense_Mutation p.E59Q 0.04 deleterious(0.01) possibly_damaging(0.852) TCGA-50-5941-01 6 54805963 54805963 G A FAM83B Missense_Mutation p.G732S 0.05 tolerated(0.82) benign(0.004) TCGA-50-5941-01 6 56999642 56999642 C T ZNF451 Nonsense_Mutation p.Q226* 0.10 TCGA-50-5941-01 6 6145961 6145961 C A F13A1 Missense_Mutation p.R697L 0.17 tolerated(0.36) benign(0) TCGA-50-5941-01 6 70964868 70964868 C A COL9A1 Silent p.G532G 0.23 TCGA-50-5941-01 6 74521964 74521964 G C CD109 Missense_Mutation p.A1247P 0.33 deleterious(0) probably_damaging(0.956) TCGA-50-5941-01 7 100777155 100777155 C T SERPINE1 Missense_Mutation p.R294C 0.07 deleterious(0.01) probably_damaging(1) TCGA-50-5941-01 7 100807289 100807289 G T VGF Missense_Mutation p.A279E 0.17 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-50-5941-01 7 101845330 101845330 C T CUX1 Missense_Mutation p.P929L 0.14 deleterious(0) unknown(0) TCGA-50-5941-01 7 103163929 103163929 G T RELN Missense_Mutation p.Q2467K 0.16 tolerated(0.4) benign(0.253) TCGA-50-5941-01 7 121651013 121651013 G A PTPRZ1 Missense_Mutation p.G638D 0.13 tolerated_low_confidence(0.15) probably_damaging(1) TCGA-50-5941-01 7 123594501 123594501 G C SPAM1 Missense_Mutation p.D293H 0.20 tolerated(0.08) benign(0.02) TCGA-50-5941-01 7 137148322 137148322 C A DGKI Missense_Mutation p.R891L 0.13 tolerated(0.08) benign(0.274) TCGA-50-5941-01 7 142139364 142139364 C G TRBV7-6 Missense_Mutation p.E87D 0.21 deleterious(0.04) benign(0.093) TCGA-50-5941-01 7 142326880 142326880 C T TRBV19 Nonsense_Mutation p.Q60* 0.17 TCGA-50-5941-01 7 142568118 142568118 G A EPHB6 Missense_Mutation p.R920H 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-50-5941-01 7 142638294 142638294 G T KEL 3'UTR 0.18 TCGA-50-5941-01 7 142651453 142651453 G A KEL Missense_Mutation p.R248W 0.13 deleterious(0) probably_damaging(1) TCGA-50-5941-01 7 143039237 143039237 T C CLCN1 Splice_Site p.X599_splice 0.22 TCGA-50-5941-01 7 14378261 14378261 A C DGKB Missense_Mutation p.H668Q 0.11 deleterious(0) possibly_damaging(0.861) TCGA-50-5941-01 7 143955988 143955988 C A OR2A7 Missense_Mutation p.C245F 0.04 deleterious(0.01) probably_damaging(0.981) TCGA-50-5941-01 7 144097292 144097292 C A NOBOX Missense_Mutation p.G320W 0.12 tolerated(0.05) benign(0.159) TCGA-50-5941-01 7 150704248 150704248 G T NOS3 Missense_Mutation p.A666S 0.18 tolerated(0.39) benign(0.183) TCGA-50-5941-01 7 151064199 151064199 G - NUB1 Frame_Shift_Del p.V350Sfs*3 0.08 TCGA-50-5941-01 7 27140891 27140891 C A HOXA2 Missense_Mutation p.R195S 0.16 deleterious(0) probably_damaging(0.99) TCGA-50-5941-01 7 36917705 36917705 G T ELMO1 Silent p.R578R 0.08 TCGA-50-5941-01 7 44046813 44046813 C T SPDYE1 Intron 0.10 TCGA-50-5941-01 7 44113476 44113476 C A POLM Missense_Mutation p.R407M 0.18 tolerated(0.08) benign(0.428) TCGA-50-5941-01 7 45141142 45141142 G A TBRG4 Nonsense_Mutation p.Q547* 0.19 TCGA-50-5941-01 7 45650023 45650023 A T ADCY1 Missense_Mutation p.M279L 0.10 deleterious(0.03) benign(0.012) TCGA-50-5941-01 7 48143002 48143002 G A UPP1 Missense_Mutation p.G144R 0.06 deleterious(0) probably_damaging(0.997) TCGA-50-5941-01 7 53104146 53104146 C A POM121L12 Missense_Mutation p.P261Q 0.16 tolerated_low_confidence(0.59) probably_damaging(0.972) TCGA-50-5941-01 7 73249147 73249147 G A WBSCR27 Silent p.L222L 0.08 TCGA-50-5941-01 7 73668693 73668693 A G RFC2 Silent p.C7C 0.27 TCGA-50-5941-01 7 73952477 73952477 G C GTF2IRD1 Missense_Mutation p.G506A 0.08 tolerated(0.53) benign(0.079) TCGA-50-5941-01 7 81624225 81624225 C G CACNA2D1 Missense_Mutation p.G565R 0.09 deleterious(0) probably_damaging(0.991) TCGA-50-5941-01 7 92762155 92762155 G T SAMD9L Missense_Mutation p.R1044S 0.12 deleterious(0) possibly_damaging(0.584) TCGA-50-5941-01 8 104415420 104415420 T G SLC25A32 Missense_Mutation p.K175T 0.36 deleterious(0.04) probably_damaging(0.948) TCGA-50-5941-01 8 10465503 10465503 C A RP1L1 Missense_Mutation p.Q2035H 0.08 unknown(0) TCGA-50-5941-01 8 11189238 11189238 T A SLC35G5 Missense_Mutation p.L208Q 0.11 tolerated(0.15) benign(0.152) TCGA-50-5941-01 8 113326767 113326767 A T CSMD3 Missense_Mutation p.N2480K 0.04 deleterious(0.01) probably_damaging(0.992) TCGA-50-5941-01 8 113668537 113668537 T C CSMD3 Silent p.E950E 0.06 TCGA-50-5941-01 8 116426404 116426404 A G TRPS1 Silent p.A1244A 0.14 TCGA-50-5941-01 8 20073974 20073974 A G ATP6V1B2 Missense_Mutation p.I377V 0.09 tolerated(0.06) benign(0.035) TCGA-50-5941-01 8 24326279 24326279 G T ADAM7 Splice_Site p.X194_splice 0.20 TCGA-50-5941-01 8 41792282 41792282 C T KAT6A Nonsense_Mutation p.W1152* 0.07 TCGA-50-5941-01 8 42046462 42046462 C A PLAT Silent p.V81V 0.33 TCGA-50-5941-01 8 68942818 68942818 C T PREX2 Silent p.N210N 0.30 TCGA-50-5941-01 8 72935108 72935108 C T TRPA1 3'UTR 0.28 TCGA-50-5941-01 8 77618756 77618756 G T ZFHX4 Missense_Mutation p.L811F 0.43 possibly_damaging(0.765) TCGA-50-5941-01 8 87242447 87242447 A T SLC7A13 Missense_Mutation p.S20R 0.06 tolerated(0.08) benign(0.048) TCGA-50-5941-01 8 89086833 89086833 C G MMP16 Missense_Mutation p.G408R 0.07 deleterious(0.01) probably_damaging(0.961) TCGA-50-5941-01 8 92307866 92307866 T C SLC26A7 Missense_Mutation p.S138P 0.09 deleterious(0.02) benign(0.088) TCGA-50-5941-01 8 95403926 95403926 C A RAD54B Missense_Mutation p.G574W 0.39 deleterious(0) probably_damaging(0.999) TCGA-50-5941-01 8 95877917 95877917 C T INTS8 Missense_Mutation p.R754W 0.04 deleterious(0) probably_damaging(0.957) TCGA-50-5941-01 9 100961605 100961605 C T TBC1D2 3'UTR 0.10 TCGA-50-5941-01 9 101747956 101747956 G A COL15A1 Silent p.G70G 0.25 TCGA-50-5941-01 9 107267232 107267232 C A OR13F1 Nonsense_Mutation p.S230* 0.21 TCGA-50-5941-01 9 111617373 111617373 C A ACTL7B Missense_Mutation p.D280Y 0.20 deleterious(0) possibly_damaging(0.88) TCGA-50-5941-01 9 114904686 114904686 C G SUSD1 Missense_Mutation p.R207T 0.06 tolerated(0.09) benign(0.245) TCGA-50-5941-01 9 125329898 125329898 G T OR1L8 Missense_Mutation p.P287T 0.10 deleterious(0) possibly_damaging(0.883) TCGA-50-5941-01 9 13119528 13119528 G A MPDZ Silent p.T1784T 0.07 TCGA-50-5941-01 9 13125264 13125264 C T MPDZ Silent p.Q1586Q 0.07 TCGA-50-5941-01 9 133932433 133932433 C G LAMC3 Missense_Mutation p.S686C 0.11 deleterious(0.03) probably_damaging(0.928) TCGA-50-5941-01 9 135781380 135781380 C A TSC1 Missense_Mutation p.A529S 0.12 tolerated(0.78) benign(0.005) TCGA-50-5941-01 9 135781381 135781381 G A TSC1 Silent p.G528G 0.14 TCGA-50-5941-01 9 17795682 17795682 G T SH3GL2 Missense_Mutation p.G334C 0.15 deleterious(0) probably_damaging(1) TCGA-50-5941-01 9 5466808 5466808 A T CD274 Missense_Mutation p.T277S 0.12 tolerated(0.68) benign(0.11) TCGA-50-5941-01 9 5920563 5920563 C A KIAA2026 Silent p.S1811S 0.07 TCGA-50-5941-01 9 74865729 74865729 G A GDA 3'Flank 0.15 TCGA-50-5941-01 9 75778406 75778406 G A ANXA1 Silent p.E190E 0.19 TCGA-50-5941-01 9 78789943 78789943 G T PCSK5 Missense_Mutation p.V600L 0.11 tolerated(0.1) benign(0.11) TCGA-50-5941-01 9 8340448 8340448 A T PTPRD Silent p.A1716A 0.05 TCGA-50-5941-01 9 84604696 84604696 C G SPATA31D1 Missense_Mutation p.Q64E 0.13 tolerated(0.09) possibly_damaging(0.492) TCGA-50-5941-01 9 85862723 85862723 G T FRMD3 3'UTR 0.08 TCGA-50-5941-01 9 90312088 90312088 G T DAPK1 Silent p.L860L 0.12 TCGA-50-5941-01 9 94486199 94486199 G A ROR2 Silent p.P859P 0.11 TCGA-50-5941-01 X 107807111 107807111 G T COL4A5 Splice_Site p.X78_splice 0.23 TCGA-50-5941-01 X 107898561 107898561 G T COL4A5 Missense_Mutation p.G1083C 0.25 unknown(0) TCGA-50-5941-01 X 107977781 107977781 T A IRS4 Missense_Mutation p.K598N 0.30 deleterious_low_confidence(0.04) unknown(0) TCGA-50-5941-01 X 109388104 109388104 G T TMEM164 Missense_Mutation p.G196C 0.05 deleterious(0) probably_damaging(0.999) TCGA-50-5941-01 X 11790301 11790301 C T MSL3 Silent p.D436D 0.04 TCGA-50-5941-01 X 118223471 118223471 A C KIAA1210 Silent p.P574P 0.32 TCGA-50-5941-01 X 118284525 118284525 C A KIAA1210 Silent p.T6T 0.09 TCGA-50-5941-01 X 123519722 123519722 C A TENM1 Missense_Mutation p.G1961C 0.05 deleterious(0) probably_damaging(0.997) TCGA-50-5941-01 X 135593508 135593508 C T HTATSF1 Missense_Mutation p.P535L 0.31 tolerated_low_confidence(0.29) benign(0.006) TCGA-50-5941-01 X 140985169 140985169 G C MAGEC3 Missense_Mutation p.G542A 0.08 deleterious(0.01) possibly_damaging(0.77) TCGA-50-5941-01 X 140995914 140995914 G T MAGEC1 Silent p.L908L 0.09 TCGA-50-5941-01 X 140995915 140995915 G A MAGEC1 Missense_Mutation p.D909N 0.09 deleterious(0.04) unknown(0) TCGA-50-5941-01 X 142718545 142718545 A G SLITRK4 Missense_Mutation p.F127S 0.05 deleterious(0) probably_damaging(0.986) TCGA-50-5941-01 X 144337347 144337347 A T SPANXN1 3'UTR 0.06 TCGA-50-5941-01 X 144904874 144904874 C G SLITRK2 Missense_Mutation p.P311A 0.06 deleterious(0) probably_damaging(0.976) TCGA-50-5941-01 X 147743813 147743813 T G AFF2 Missense_Mutation p.S189A 0.06 tolerated(0.56) benign(0.01) TCGA-50-5941-01 X 148037217 148037217 C A AFF2 Missense_Mutation p.Q548K 0.08 deleterious(0.02) probably_damaging(0.981) TCGA-50-5941-01 X 151303295 151303295 C A MAGEA10 Missense_Mutation p.E266D 0.09 tolerated(0.16) benign(0.059) TCGA-50-5941-01 X 153626712 153626712 G T RPL10 5'UTR 0.08 TCGA-50-5941-01 X 32380907 32380907 T A DMD Nonsense_Mutation p.K1775* 0.11 TCGA-50-5941-01 X 37026687 37026687 G T FAM47C Silent p.T68T 0.14 TCGA-50-5941-01 X 38144877 38144877 C A RPGR Missense_Mutation p.Q1125H 0.13 unknown(0) TCGA-50-5941-01 X 48781242 48781242 G C OTUD5 Missense_Mutation p.R456G 0.22 deleterious(0.02) benign(0.177) TCGA-50-5941-01 X 55116444 55116444 A T PAGE2 Splice_Site 0.06 TCGA-50-5941-01 X 72674386 72674386 C A CDX4 Missense_Mutation p.P274T 0.16 deleterious(0.03) benign(0.374) TCGA-50-5941-01 X 89177403 89177403 C G TGIF2LX Missense_Mutation p.R107G 0.10 deleterious(0.04) probably_damaging(0.993) TCGA-50-5941-01 X 91138018 91138018 G T PCDH11X Intron 0.29 TCGA-50-5941-01 Y 16952497 16952497 G T NLGN4Y Missense_Mutation p.E602D 0.14 tolerated(0.72) probably_damaging(0.952) TCGA-50-5942-01 10 48385969 48385969 G T RBP3 Missense_Mutation p.N1041K 0.04 deleterious(0.01) possibly_damaging(0.728) TCGA-50-5942-01 11 111708285 111708285 G A ALG9 Missense_Mutation p.P289S 0.39 deleterious(0.02) possibly_damaging(0.901) TCGA-50-5942-01 11 55322400 55322400 C T OR4C15 Silent p.L206L 0.07 TCGA-50-5942-01 11 56143496 56143496 A T OR8U1 Missense_Mutation p.M133L 0.07 tolerated(0.07) benign(0.002) TCGA-50-5942-01 11 77378462 77378462 G A RSF1 Nonsense_Mutation p.R1276* 0.06 TCGA-50-5942-01 12 125441662 125441662 G A DHX37 Missense_Mutation p.P726L 0.19 deleterious(0.01) benign(0.334) TCGA-50-5942-01 12 21679861 21679861 G T C12orf39 Silent p.L16L 0.10 TCGA-50-5942-01 12 29786142 29786142 C A TMTC1 Missense_Mutation p.A356S 0.13 tolerated(0.08) probably_damaging(0.978) TCGA-50-5942-01 12 86377333 86377333 C T MGAT4C Missense_Mutation p.R88H 0.08 tolerated(0.53) benign(0.061) TCGA-50-5942-01 14 106691767 106691767 C A IGHV3-21 Missense_Mutation p.R86L 0.13 deleterious_low_confidence(0.01) benign(0.292) TCGA-50-5942-01 14 79117585 79117585 C A NRXN3 Missense_Mutation p.D6E 0.34 deleterious(0) possibly_damaging(0.72) TCGA-50-5942-01 15 48527175 48527175 G C SLC12A1 Missense_Mutation p.G397R 0.28 deleterious(0) probably_damaging(1) TCGA-50-5942-01 15 54707189 54707189 A G UNC13C Silent p.Q1619Q 0.11 TCGA-50-5942-01 15 57823948 57823948 T C CGNL1 Missense_Mutation p.S1088P 0.07 tolerated(0.12) possibly_damaging(0.723) TCGA-50-5942-01 15 66639557 66639557 C A TIPIN Intron 0.12 TCGA-50-5942-01 15 79749976 79749976 G A KIAA1024 Missense_Mutation p.G496D 0.34 tolerated_low_confidence(0.14) benign(0.093) TCGA-50-5942-01 15 91453496 91453496 A C MAN2A2 Missense_Mutation p.L517F 0.11 deleterious(0.02) probably_damaging(0.952) TCGA-50-5942-01 16 90128521 90128521 C T PRDM7 Silent p.V230V 0.23 TCGA-50-5942-01 17 3664699 3664699 A T ITGAE Missense_Mutation p.L144H 0.05 deleterious(0) probably_damaging(0.935) TCGA-50-5942-01 17 38510602 38510602 T A RARA Missense_Mutation p.F286I 0.17 deleterious(0.02) probably_damaging(0.967) TCGA-50-5942-01 17 38510603 38510603 T C RARA Missense_Mutation p.F286S 0.16 deleterious(0) probably_damaging(0.998) TCGA-50-5942-01 17 39552825 39552825 G A KRT31 Silent p.Y145Y 0.08 TCGA-50-5942-01 17 39767654 39767654 C G KRT16 Missense_Mutation p.E238D 0.29 deleterious(0) possibly_damaging(0.764) TCGA-50-5942-01 17 6927925 6927925 A T BCL6B Missense_Mutation p.N203Y 0.05 deleterious(0) probably_damaging(0.998) TCGA-50-5942-01 18 44560673 44560673 G T TCEB3B Missense_Mutation p.D321E 0.07 tolerated(0.41) benign(0.076) TCGA-50-5942-01 19 3533341 3533341 C T FZR1 Missense_Mutation p.P431L 0.07 deleterious(0) probably_damaging(1) TCGA-50-5942-01 19 40842259 40842259 G A C19orf47 Silent p.A62A 0.10 TCGA-50-5942-01 19 55447693 55447693 G A NLRP7 Missense_Mutation p.R746C 0.14 tolerated(0.08) possibly_damaging(0.517) TCGA-50-5942-01 19 6185606 6185606 T G ACSBG2 Silent p.S494S 0.09 TCGA-50-5942-01 1 198668699 198668699 C - PTPRC Frame_Shift_Del p.S102Yfs*65 0.10 TCGA-50-5942-01 1 211280615 211280615 G T KCNH1 Missense_Mutation p.Q62K 0.16 deleterious(0.03) possibly_damaging(0.859) TCGA-50-5942-01 1 215792243 215792243 G T KCTD3 Missense_Mutation p.Q526H 0.18 tolerated(0.08) probably_damaging(0.997) TCGA-50-5942-01 1 248059653 248059653 C A OR2W3 Silent p.I255I 0.05 TCGA-50-5942-01 1 33354743 33354743 T A HPCA Missense_Mutation p.F82I 0.37 deleterious(0) probably_damaging(0.999) TCGA-50-5942-01 1 40882768 40882768 G T SMAP2 Missense_Mutation p.Q388H 0.13 deleterious(0) probably_damaging(0.986) TCGA-50-5942-01 1 40882769 40882769 G T SMAP2 Splice_Site p.X388_splice 0.14 TCGA-50-5942-01 1 57252852 57252852 C A C1orf168 Nonsense_Mutation p.E317* 0.08 TCGA-50-5942-01 20 20278871 20278871 G C C20orf26 Missense_Mutation p.R1088P 0.07 deleterious(0.01) probably_damaging(0.954) TCGA-50-5942-01 20 21142930 21142930 A C RP4-777D9.2 Intron 0.06 TCGA-50-5942-01 20 43249764 43249764 G A ADA Silent p.Y290Y 0.08 TCGA-50-5942-01 2 155711377 155711377 C A KCNJ3 Missense_Mutation p.T353N 0.05 deleterious(0.02) probably_damaging(1) TCGA-50-5942-01 2 168103814 168103814 G A XIRP2 Missense_Mutation p.R1971K 0.10 benign(0.014) TCGA-50-5942-01 2 185803464 185803464 C G ZNF804A Missense_Mutation p.A1114G 0.06 deleterious(0.01) benign(0.147) TCGA-50-5942-01 2 40342549 40342549 C A SLC8A1 Silent p.V922V 0.13 TCGA-50-5942-01 2 48738497 48738497 A T PPP1R21 Nonsense_Mutation p.K735* 0.10 TCGA-50-5942-01 3 111996575 111996575 G T SLC9C1 Missense_Mutation p.P151T 0.11 deleterious(0) probably_damaging(1) TCGA-50-5942-01 3 170715646 170715646 G A SLC2A2 3'UTR 0.08 TCGA-50-5942-01 3 47142964 47142964 G A SETD2 Nonsense_Mutation p.Q1667* 0.06 TCGA-50-5942-01 3 47155459 47155459 T C SETD2 Missense_Mutation p.N1541S 0.29 deleterious(0) probably_damaging(0.993) TCGA-50-5942-01 3 47161858 47161859 - C SETD2 Frame_Shift_Ins p.D1423Gfs*6 0.09 TCGA-50-5942-01 3 52326928 52326928 G T GLYCTK Missense_Mutation p.G453V 0.09 deleterious(0) probably_damaging(1) TCGA-50-5942-01 4 160264217 160264217 A G RAPGEF2 Missense_Mutation p.Q841R 0.08 deleterious(0.01) probably_damaging(0.986) TCGA-50-5942-01 4 5812081 5812081 C A EVC Missense_Mutation p.T933N 0.13 tolerated(0.1) benign(0.037) TCGA-50-5942-01 4 74043241 74043241 A C ANKRD17 Missense_Mutation p.F135V 0.11 probably_damaging(0.932) TCGA-50-5942-01 5 24498627 24498627 G C CDH10 Missense_Mutation p.N465K 0.07 tolerated(0.18) benign(0.038) TCGA-50-5942-01 5 32093041 32093041 G A PDZD2 Missense_Mutation p.D2586N 0.33 deleterious(0.02) benign(0.014) TCGA-50-5942-01 5 37064848 37064848 C T NIPBL Missense_Mutation p.R2757C 0.06 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-50-5942-01 6 25813103 25813103 T C SLC17A1 Missense_Mutation p.T285A 0.08 tolerated(0.11) benign(0.438) TCGA-50-5942-01 6 29527451 29527451 C A UBD Splice_Site p.X9_splice 0.06 TCGA-50-5942-01 6 36298275 36298275 A T C6orf222 Missense_Mutation p.S65T 0.07 tolerated(0.31) benign(0.024) TCGA-50-5942-01 6 81053483 81053483 A C BCKDHB Missense_Mutation p.K381Q 0.28 deleterious(0) possibly_damaging(0.626) TCGA-50-5942-01 6 99994324 99994324 G A CCNC Nonsense_Mutation p.Q209* 0.09 TCGA-50-5942-01 7 107696313 107696313 A G LAMB4 Silent p.L1173L 0.38 TCGA-50-5942-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.35 deleterious(0) probably_damaging(0.967) TCGA-50-5942-01 7 142045615 142045615 A G TRBV4-2 Missense_Mutation p.H48R 0.10 deleterious(0) probably_damaging(0.994) TCGA-50-5942-01 7 6840708 6840708 T A CCZ1B Splice_Site p.X422_splice 0.11 TCGA-50-5942-01 7 99170026 99170026 C G ZNF655 Missense_Mutation p.L134V 0.34 tolerated(0.19) possibly_damaging(0.567) TCGA-50-5942-01 9 35091859 35091859 C A PIGO Silent p.A675A 0.09 TCGA-50-5942-01 9 77354328 77354328 T G TRPM6 Missense_Mutation p.Y1842S 0.04 deleterious(0.02) possibly_damaging(0.584) TCGA-50-5942-01 X 101970221 101970221 G T GPRASP2 Missense_Mutation p.A142S 0.06 tolerated(0.5) benign(0.004) TCGA-50-5942-01 X 140985257 140985257 G A MAGEC3 Silent p.V571V 0.06 TCGA-50-5942-01 X 84526181 84526181 C A ZNF711 Missense_Mutation p.Q545K 0.20 tolerated(0.16) benign(0.265) TCGA-50-5942-01 X 96139775 96139775 G A RPA4 Missense_Mutation p.V156M 0.07 tolerated(0.06) benign(0.008) TCGA-50-5944-01 10 105800830 105800830 G A COL17A1 Silent p.S898S 0.11 TCGA-50-5944-01 11 102565710 102565710 G A MMP27 Silent p.L341L 0.15 TCGA-50-5944-01 11 102565768 102565768 G C MMP27 Missense_Mutation p.F321L 0.08 tolerated(0.08) benign(0.05) TCGA-50-5944-01 11 102565801 102565801 G A MMP27 Silent p.I310I 0.07 TCGA-50-5944-01 11 102743681 102743681 G A MMP12 RNA 0.24 TCGA-50-5944-01 11 58723213 58723213 G T GLYATL1 Missense_Mutation p.A239S 0.24 tolerated(0.14) possibly_damaging(0.583) TCGA-50-5944-01 11 59283060 59283060 G A OR4D9 Silent p.L225L 0.19 TCGA-50-5944-01 11 60695271 60695271 C T TMEM132A Silent p.P158P 0.18 TCGA-50-5944-01 11 61539415 61539415 A G MYRF Missense_Mutation p.Y369C 0.20 tolerated(0.16) benign(0.076) TCGA-50-5944-01 11 65172387 65172387 C T FRMD8 Missense_Mutation p.A375V 0.18 tolerated(0.23) benign(0.002) TCGA-50-5944-01 12 21355464 21355464 T C SLCO1B1 Missense_Mutation p.L392S 0.35 tolerated(0.15) benign(0.158) TCGA-50-5944-01 14 35182544 35182544 G A CFL2 Missense_Mutation p.P76L 0.22 deleterious(0.05) possibly_damaging(0.894) TCGA-50-5944-01 14 38679102 38679102 C T SSTR1 Missense_Mutation p.R170W 0.11 deleterious(0) probably_damaging(0.993) TCGA-50-5944-01 14 39716224 39716224 A T MIA2 Missense_Mutation p.D149V 0.20 deleterious(0) probably_damaging(0.943) TCGA-50-5944-01 15 37109938 37109938 G T CSNK1A1P1 RNA 0.43 TCGA-50-5944-01 15 80253408 80253408 G C BCL2A1 3'UTR 0.24 TCGA-50-5944-01 16 31282350 31282350 G T ITGAM Missense_Mutation p.R168L 0.27 deleterious(0.03) benign(0.096) TCGA-50-5944-01 16 31282351 31282351 G T ITGAM Silent p.R168R 0.27 TCGA-50-5944-01 16 4745281 4745281 C T NUDT16L1 3'UTR 0.89 TCGA-50-5944-01 16 51173914 51173914 C T SALL1 Missense_Mutation p.G740D 0.15 deleterious(0) probably_damaging(0.989) TCGA-50-5944-01 16 55360423 55360423 C T IRX6 Missense_Mutation p.P74L 0.50 deleterious(0) probably_damaging(0.999) TCGA-50-5944-01 16 57261295 57261295 T - RSPRY1 Frame_Shift_Del p.Y401* 0.22 TCGA-50-5944-01 16 81151065 81151065 G T PKD1L2 RNA 0.43 TCGA-50-5944-01 17 27239438 27239438 T A PHF12 Intron 0.17 TCGA-50-5944-01 17 38906800 38906800 G A KRT25 Missense_Mutation p.A336V 0.16 tolerated(0.38) benign(0.013) TCGA-50-5944-01 17 3990763 3990763 C T ZZEF1 Silent p.Q769Q 0.16 TCGA-50-5944-01 17 5286437 5286437 G A RABEP1 Silent p.R836R 0.05 TCGA-50-5944-01 17 60040305 60040305 G T MED13 Silent p.I1624I 0.21 TCGA-50-5944-01 17 62504728 62504728 A G CEP95 Missense_Mutation p.N13S 0.32 deleterious(0.01) benign(0.144) TCGA-50-5944-01 17 7577085 7577085 C A TP53 Nonsense_Mutation p.E285* 0.60 TCGA-50-5944-01 17 77915948 77915948 C T TBC1D16 Missense_Mutation p.V656I 0.22 deleterious(0.01) possibly_damaging(0.86) TCGA-50-5944-01 17 79409981 79409981 C T RP11-1055B8.7 Missense_Mutation p.P536S 0.60 probably_damaging(0.998) TCGA-50-5944-01 18 30791980 30791980 T A CCDC178 Silent p.A706A 0.19 TCGA-50-5944-01 19 49494725 49494725 G T GYS1 Missense_Mutation p.T45K 0.11 deleterious(0) possibly_damaging(0.49) TCGA-50-5944-01 19 51630513 51630513 T A SIGLEC9 Silent p.P325P 0.30 TCGA-50-5944-01 19 55505634 55505634 T - NLRP2 Intron 0.27 TCGA-50-5944-01 19 56382251 56382251 C G NLRP4 Missense_Mutation p.R805G 0.40 tolerated(0.34) benign(0.001) TCGA-50-5944-01 1 114196630 114196630 A T MAGI3 Silent p.P873P 0.31 TCGA-50-5944-01 1 17017751 17017751 C G ESPNP RNA 0.38 TCGA-50-5944-01 1 190067206 190067206 G A BRINP3 Missense_Mutation p.A748V 0.04 tolerated(0.18) benign(0.054) TCGA-50-5944-01 1 223983555 223983555 G A TP53BP2 Missense_Mutation p.R896C 0.04 tolerated(0.09) benign(0.002) TCGA-50-5944-01 1 74507534 74507534 A G LRRIQ3 Missense_Mutation p.S361P 0.28 tolerated(0.18) benign(0.007) TCGA-50-5944-01 1 85115982 85115982 C T SSX2IP Intron 0.49 TCGA-50-5944-01 20 34207180 34207180 G A SPAG4 Nonsense_Mutation p.W286* 0.11 TCGA-50-5944-01 20 34208665 34208665 G C SPAG4 Missense_Mutation p.E379D 0.07 deleterious(0.04) possibly_damaging(0.515) TCGA-50-5944-01 21 47532313 47532313 G T COL6A2 Missense_Mutation p.R179L 0.60 deleterious(0.02) probably_damaging(0.93) TCGA-50-5944-01 2 168115032 168115032 A G XIRP2 3'UTR 0.18 TCGA-50-5944-01 2 172644412 172644412 G A SLC25A12 Missense_Mutation p.T544I 0.35 deleterious(0.04) probably_damaging(1) TCGA-50-5944-01 2 192225432 192225432 C G MYO1B Missense_Mutation p.S213C 0.44 tolerated(0.19) possibly_damaging(0.908) TCGA-50-5944-01 2 24930566 24930566 T G NCOA1 Missense_Mutation p.S743A 0.40 tolerated(0.5) benign(0.073) TCGA-50-5944-01 2 31598368 31598368 G A XDH Silent p.L494L 0.45 TCGA-50-5944-01 3 109049557 109049557 G A DPPA4 Missense_Mutation p.P165S 0.37 tolerated(0.42) benign(0.034) TCGA-50-5944-01 3 134514403 134514403 G T EPHB1 5'UTR 0.18 TCGA-50-5944-01 3 14862467 14862467 C A FGD5 Missense_Mutation p.T630K 0.21 deleterious(0) probably_damaging(0.991) TCGA-50-5944-01 3 180320181 180320181 C T TTC14 Silent p.G44G 0.42 TCGA-50-5944-01 4 3344679 3344679 C T RGS12 Missense_Mutation p.R633W 0.14 tolerated(0.2) possibly_damaging(0.895) TCGA-50-5944-01 4 65146797 65146797 G T TECRL Nonsense_Mutation p.S309* 0.15 TCGA-50-5944-01 4 85781638 85781638 C T WDFY3 Missense_Mutation p.C36Y 0.25 tolerated(0.14) possibly_damaging(0.76) TCGA-50-5944-01 4 89618409 89618409 C T NAP1L5 Missense_Mutation p.G166E 0.26 deleterious(0.01) unknown(0) TCGA-50-5944-01 5 140730641 140730641 G A PCDHGB1 Missense_Mutation p.A272T 0.22 deleterious(0) probably_damaging(0.911) TCGA-50-5944-01 5 16465785 16465785 G C ZNF622 5'UTR 0.22 TCGA-50-5944-01 5 167551958 167551958 C A TENM2 Silent p.V704V 0.17 TCGA-50-5944-01 5 41904478 41904478 C G C5orf51 Silent p.A3A 0.48 TCGA-50-5944-01 5 52360756 52360756 G A ITGA2 Silent p.Q539Q 0.05 TCGA-50-5944-01 5 67584451 67584451 G A PIK3R1 Intron 0.26 TCGA-50-5944-01 5 96503628 96503628 C G RIOK2 Missense_Mutation p.E314Q 0.23 tolerated(0.11) benign(0.103) TCGA-50-5944-01 6 10702848 10702848 C A PAK1IP1 Nonsense_Mutation p.S140* 0.21 TCGA-50-5944-01 6 151142342 151142342 C T PLEKHG1 Missense_Mutation p.R474W 0.23 deleterious(0.03) possibly_damaging(0.852) TCGA-50-5944-01 6 152671318 152671318 T C SYNE1 Silent p.Q3962Q 0.18 TCGA-50-5944-01 6 26250719 26250719 G T HIST1H3F Missense_Mutation p.P39T 0.23 deleterious_low_confidence(0.02) benign(0.024) TCGA-50-5944-01 6 31508296 31508296 T G DDX39B Missense_Mutation p.D5A 0.20 tolerated_low_confidence(0.07) benign(0.002) TCGA-50-5944-01 6 3225114 3225114 C T TUBB2B Missense_Mutation p.M403I 0.08 deleterious_low_confidence(0.01) benign(0.309) TCGA-50-5944-01 6 32362585 32362585 G A BTNL2 Silent p.D432D 0.18 TCGA-50-5944-01 7 103006539 103006539 G A PSMC2 Missense_Mutation p.R258H 0.23 deleterious(0.01) probably_damaging(1) TCGA-50-5944-01 7 131113849 131113849 C T MKLN1 Missense_Mutation p.A302V 0.10 tolerated(0.92) benign(0.028) TCGA-50-5944-01 7 142659398 142659398 G A KEL 5'UTR 0.22 TCGA-50-5944-01 7 55259515 55259515 T G EGFR Missense_Mutation p.L858R 0.29 deleterious(0) probably_damaging(1) TCGA-50-5944-01 7 71175812 71175812 G A WBSCR17 Missense_Mutation p.D523N 0.19 tolerated(0.06) probably_damaging(0.994) TCGA-50-5944-01 7 92838013 92838013 G A HEPACAM2 Missense_Mutation p.R298C 0.39 deleterious(0.02) possibly_damaging(0.579) TCGA-50-5944-01 8 113564858 113564858 C A CSMD3 Missense_Mutation p.M1442I 0.38 tolerated(0.54) benign(0.043) TCGA-50-5944-01 8 11683576 11683576 G A FDFT1 Missense_Mutation p.R185H 0.19 tolerated(0.06) benign(0.137) TCGA-50-5944-01 8 3226892 3226892 G C CSMD1 Missense_Mutation p.A928G 0.13 benign(0.421) TCGA-50-5944-01 8 97321848 97321848 T C PTDSS1 Silent p.F357F 0.36 TCGA-50-5944-01 9 131071839 131071839 G A TRUB2 Missense_Mutation p.A329V 0.23 tolerated_low_confidence(0.35) benign(0.001) TCGA-50-5944-01 X 127185954 127185954 G T ACTRT1 Missense_Mutation p.L78M 0.22 tolerated(0.05) probably_damaging(0.961) TCGA-50-5944-01 X 76875916 76875916 G T ATRX Nonsense_Mutation p.S1740* 0.15 TCGA-50-5946-01 10 1038475 1038475 C A GTPBP4 Missense_Mutation p.T32N 0.16 deleterious(0) probably_damaging(0.969) TCGA-50-5946-01 10 104123556 104123556 G T GBF1 Splice_Site p.X701_splice 0.41 TCGA-50-5946-01 10 106207541 106207541 G T CCDC147 Missense_Mutation p.R781L 0.37 deleterious(0.01) benign(0.152) TCGA-50-5946-01 10 108521404 108521404 C T SORCS1 Missense_Mutation p.E301K 0.23 deleterious(0) possibly_damaging(0.693) TCGA-50-5946-01 10 112362260 112362260 A T SMC3 Missense_Mutation p.Q1045L 0.26 tolerated(0.06) benign(0) TCGA-50-5946-01 10 116919825 116919825 C T ATRNL1 Missense_Mutation p.P285L 0.43 deleterious(0) possibly_damaging(0.892) TCGA-50-5946-01 10 126490353 126490353 C A FAM175B 5'Flank 0.44 TCGA-50-5946-01 10 133930995 133930995 G T JAKMIP3 Missense_Mutation p.A184S 0.14 deleterious(0.01) probably_damaging(0.979) TCGA-50-5946-01 10 135165619 135165619 T C PRAP1 Silent p.G79G 0.25 TCGA-50-5946-01 10 15113847 15113847 G T OLAH Missense_Mutation p.G262V 0.13 deleterious(0.02) probably_damaging(1) TCGA-50-5946-01 10 15296858 15296858 C A FAM171A1 Missense_Mutation p.V147F 0.55 deleterious(0) probably_damaging(0.955) TCGA-50-5946-01 10 22616918 22616918 A T BMI1 Missense_Mutation p.D119V 0.16 deleterious(0.01) benign(0.296) TCGA-50-5946-01 10 23248496 23248496 T A ARMC3 Nonsense_Mutation p.L177* 0.18 TCGA-50-5946-01 10 26534862 26534862 C T GAD2 Missense_Mutation p.L285F 0.10 deleterious(0.02) possibly_damaging(0.46) TCGA-50-5946-01 10 26781306 26781306 A T APBB1IP Silent p.G17G 0.24 TCGA-50-5946-01 10 28224001 28224001 T A ARMC4 Missense_Mutation p.Q811H 0.21 tolerated(0.05) benign(0.337) TCGA-50-5946-01 10 31799728 31799728 C T ZEB1 Silent p.S204S 0.21 TCGA-50-5946-01 10 37430820 37430820 T A ANKRD30A Missense_Mutation p.V276E 0.25 deleterious(0.02) benign(0.066) TCGA-50-5946-01 10 38121042 38121042 C A ZNF248 Missense_Mutation p.G414V 0.20 deleterious(0) probably_damaging(1) TCGA-50-5946-01 10 45799070 45799070 G T OR13A1 Nonsense_Mutation p.C267* 0.36 TCGA-50-5946-01 10 45799585 45799586 TG - OR13A1 Frame_Shift_Del p.M96Afs*43 0.21 TCGA-50-5946-01 10 54048605 54048605 G T PRKG1 Missense_Mutation p.C610F 0.32 deleterious(0) probably_damaging(0.986) TCGA-50-5946-01 10 55569194 55569194 G T PCDH15 Missense_Mutation p.T473K 0.30 deleterious_low_confidence(0.01) unknown(0) TCGA-50-5946-01 10 55892663 55892663 C A PCDH15 Missense_Mutation p.R630M 0.19 deleterious(0) probably_damaging(0.993) TCGA-50-5946-01 10 61011356 61011356 T A FAM13C Missense_Mutation p.Q538L 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-50-5946-01 10 63810695 63810695 G T ARID5B Missense_Mutation p.R261I 0.20 deleterious(0) probably_damaging(0.974) TCGA-50-5946-01 10 68280500 68280500 C G CTNNA3 Missense_Mutation p.R469T 0.17 deleterious(0.01) possibly_damaging(0.537) TCGA-50-5946-01 10 69726544 69726544 C A HERC4 Nonsense_Mutation p.G608* 0.38 TCGA-50-5946-01 10 70154102 70154102 C T RUFY2 Missense_Mutation p.E204K 0.21 deleterious(0.01) probably_damaging(0.949) TCGA-50-5946-01 10 71139737 71139737 A G HK1 Missense_Mutation p.N388S 0.23 tolerated(0.36) benign(0.051) TCGA-50-5946-01 10 73044574 73044574 C T UNC5B Silent p.S134S 0.23 TCGA-50-5946-01 10 73544710 73544710 C A CDH23 Silent p.P1860P 0.33 TCGA-50-5946-01 10 75527681 75527681 C - SEC24C Frame_Shift_Del p.P700Lfs*37 0.12 TCGA-50-5946-01 10 75530738 75530738 A G SEC24C Missense_Mutation p.K1057R 0.20 tolerated(0.13) benign(0.02) TCGA-50-5946-01 10 76924411 76924411 G C SAMD8 Missense_Mutation p.R196T 0.15 tolerated(0.37) benign(0.379) TCGA-50-5946-01 10 79778975 79778975 G A POLR3A Missense_Mutation p.P412S 0.15 tolerated(0.13) benign(0.196) TCGA-50-5946-01 10 8106097 8106097 G - GATA3 Frame_Shift_Del p.R307Sfs*49 0.32 TCGA-50-5946-01 10 82331207 82331207 T C SH2D4B Missense_Mutation p.I123T 0.19 deleterious(0.01) possibly_damaging(0.89) TCGA-50-5946-01 10 88260055 88260055 C A WAPAL Missense_Mutation p.M315I 0.37 tolerated_low_confidence(0.58) benign(0) TCGA-50-5946-01 10 90356677 90356677 C A LIPJ Missense_Mutation p.P236Q 0.07 tolerated(0.55) benign(0.001) TCGA-50-5946-01 10 90537893 90537893 A T LIPN Missense_Mutation p.Y364F 0.42 tolerated(0.09) benign(0.053) TCGA-50-5946-01 10 90588415 90588415 T C ANKRD22 Silent p.R74R 0.25 TCGA-50-5946-01 10 92678688 92678688 C A ANKRD1 Silent p.L129L 0.17 TCGA-50-5946-01 10 96058404 96058404 G T PLCE1 Silent p.V1812V 0.17 TCGA-50-5946-01 10 97987199 97987199 G T BLNK Missense_Mutation p.P110T 0.20 tolerated(0.24) benign(0.014) TCGA-50-5946-01 10 99518990 99518990 C T ZFYVE27 Intron 0.17 TCGA-50-5946-01 11 101342064 101342064 G T TRPC6 Nonsense_Mutation p.Y753* 0.24 TCGA-50-5946-01 11 101765724 101765724 C A ANGPTL5 Missense_Mutation p.V245L 0.22 deleterious(0.02) benign(0.371) TCGA-50-5946-01 11 106558141 106558141 C G GUCY1A2 3'UTR 0.31 TCGA-50-5946-01 11 106680760 106680760 T G GUCY1A2 Missense_Mutation p.T551P 0.19 deleterious(0) probably_damaging(0.991) TCGA-50-5946-01 11 106681144 106681144 C A GUCY1A2 Missense_Mutation p.G423C 0.23 deleterious(0) probably_damaging(0.999) TCGA-50-5946-01 11 108382200 108382200 T A EXPH5 Missense_Mutation p.Q1345L 0.30 deleterious(0.04) possibly_damaging(0.892) TCGA-50-5946-01 11 113103504 113103504 A G NCAM1 Missense_Mutation p.Q546R 0.21 deleterious(0.01) benign(0.043) TCGA-50-5946-01 11 113849995 113849995 G A HTR3A Missense_Mutation p.R93Q 0.27 tolerated(0.07) possibly_damaging(0.63) TCGA-50-5946-01 11 117329506 117329506 G T DSCAML1 Missense_Mutation p.R1238S 0.27 deleterious(0.03) probably_damaging(1) TCGA-50-5946-01 11 119149229 119149229 G C CBL Missense_Mutation p.G413R 0.25 deleterious(0.01) probably_damaging(0.952) TCGA-50-5946-01 11 119244128 119244128 G C USP2 Missense_Mutation p.H21Q 0.26 deleterious_low_confidence(0.04) benign(0.034) TCGA-50-5946-01 11 120198288 120198288 C T TMEM136 Silent p.L68L 0.24 TCGA-50-5946-01 11 120702635 120702635 G A GRIK4 Missense_Mutation p.D196N 0.26 deleterious(0.02) benign(0.07) TCGA-50-5946-01 11 121391460 121391460 G A SORL1 Missense_Mutation p.E436K 0.37 deleterious(0.01) possibly_damaging(0.585) TCGA-50-5946-01 11 122930913 122930913 T C HSPA8 Missense_Mutation p.K159E 0.26 deleterious_low_confidence(0) possibly_damaging(0.552) TCGA-50-5946-01 11 123909326 123909326 G T OR10G7 Missense_Mutation p.P128Q 0.16 deleterious(0) probably_damaging(0.97) TCGA-50-5946-01 11 124180299 124180299 G T OR8D1 Missense_Mutation p.R122S 0.21 deleterious(0) possibly_damaging(0.508) TCGA-50-5946-01 11 18291443 18291443 G T SAA1 3'UTR 0.37 TCGA-50-5946-01 11 18309540 18309540 C A HPS5 Missense_Mutation p.V821L 0.42 tolerated(0.06) benign(0.087) TCGA-50-5946-01 11 20065812 20065812 G T NAV2 Nonsense_Mutation p.G1088* 0.44 TCGA-50-5946-01 11 20676399 20676399 G T SLC6A5 Silent p.L793L 0.61 TCGA-50-5946-01 11 30253482 30253482 T A FSHB Nonsense_Mutation p.C11* 0.51 TCGA-50-5946-01 11 5020910 5020910 G T OR51L1 Missense_Mutation p.R233L 0.43 tolerated(0.15) benign(0.268) TCGA-50-5946-01 11 5344734 5344734 T G OR51B2 Missense_Mutation p.N265T 0.32 deleterious(0) benign(0.158) TCGA-50-5946-01 11 5345006 5345006 A T OR51B2 Silent p.R174R 0.24 TCGA-50-5946-01 11 55064981 55064981 C A TRIM51HP RNA 0.24 TCGA-50-5946-01 11 55579537 55579537 C G OR5L1 Missense_Mutation p.L199V 0.16 tolerated(0.18) benign(0.052) TCGA-50-5946-01 11 55904515 55904515 C A OR8J3 Missense_Mutation p.R227M 0.19 deleterious(0) probably_damaging(0.943) TCGA-50-5946-01 11 55927137 55927137 C A OR8K5 Missense_Mutation p.M219I 0.25 tolerated_low_confidence(0.31) benign(0.001) TCGA-50-5946-01 11 56185348 56185348 C A OR5R1 Missense_Mutation p.D121Y 0.17 deleterious(0) probably_damaging(1) TCGA-50-5946-01 11 5729473 5729473 G A TRIM22 Missense_Mutation p.D282N 0.18 deleterious(0.03) probably_damaging(0.996) TCGA-50-5946-01 11 59132662 59132662 C T OR5AN1 Missense_Mutation p.S244F 0.19 deleterious(0) probably_damaging(1) TCGA-50-5946-01 11 60638464 60638464 C T ZP1 Silent p.V287V 0.15 TCGA-50-5946-01 11 61196719 61196719 G T CPSF7 Missense_Mutation p.P40T 0.22 deleterious_low_confidence(0) unknown(0) TCGA-50-5946-01 11 62678510 62678510 A T CHRM1 Silent p.G21G 0.43 TCGA-50-5946-01 11 63233725 63233725 C T HRASLS5 Missense_Mutation p.G202R 0.41 tolerated(0.11) possibly_damaging(0.452) TCGA-50-5946-01 11 63676622 63676622 C T MARK2 Silent p.L760L 0.14 TCGA-50-5946-01 11 64329782 64329782 G T SLC22A11 Silent p.T232T 0.50 TCGA-50-5946-01 11 64877999 64877999 G T VPS51 Missense_Mutation p.D642Y 0.12 deleterious(0) probably_damaging(0.992) TCGA-50-5946-01 11 65998372 65998372 C T PACS1 Silent p.S529S 0.12 TCGA-50-5946-01 11 67925476 67925476 G A SUV420H1 Silent p.I779I 0.20 TCGA-50-5946-01 11 67926066 67926066 G C SUV420H1 Missense_Mutation p.P583A 0.13 tolerated(0.16) benign(0.023) TCGA-50-5946-01 11 67926158 67926158 G C SUV420H1 Missense_Mutation p.S552C 0.13 deleterious(0.01) benign(0.019) TCGA-50-5946-01 11 72145270 72145270 G A CLPB Silent p.L83L 0.30 TCGA-50-5946-01 11 72297129 72297129 G C PDE2A Silent p.L389L 0.26 TCGA-50-5946-01 11 74717303 74717303 C T NEU3 Silent p.P384P 0.42 TCGA-50-5946-01 11 88301015 88301015 G A GRM5 Silent p.S612S 0.33 TCGA-50-5946-01 11 89018110 89018110 C A TYR Missense_Mutation p.L452I 0.24 tolerated(0.07) probably_damaging(0.996) TCGA-50-5946-01 11 92498133 92498133 T C FAT3 Missense_Mutation p.I1358T 0.24 benign(0) TCGA-50-5946-01 11 93826774 93826774 G A HEPHL1 Missense_Mutation p.R801Q 0.30 deleterious(0.02) benign(0.055) TCGA-50-5946-01 12 101018047 101018047 C T GAS2L3 Silent p.H488H 0.18 TCGA-50-5946-01 12 109205094 109205094 T C SSH1 Missense_Mutation p.T138A 0.41 deleterious(0.01) possibly_damaging(0.611) TCGA-50-5946-01 12 11174893 11174893 T C TAS2R19 Missense_Mutation p.H93R 0.29 deleterious(0) probably_damaging(0.957) TCGA-50-5946-01 12 114400144 114400144 C T RBM19 Missense_Mutation p.D38N 0.20 deleterious(0) probably_damaging(0.948) TCGA-50-5946-01 12 117217093 117217093 C A RNFT2 Silent p.T274T 0.11 TCGA-50-5946-01 12 117664545 117664545 C G NOS1 Missense_Mutation p.C1250S 0.53 deleterious(0.01) probably_damaging(1) TCGA-50-5946-01 12 117968784 117968784 C G KSR2 Silent p.A588A 0.43 TCGA-50-5946-01 12 121098037 121098037 G A CABP1 Missense_Mutation p.D242N 0.35 deleterious(0.03) probably_damaging(0.965) TCGA-50-5946-01 12 121747580 121747580 T C ANAPC5 Silent p.K660K 0.30 TCGA-50-5946-01 12 124826370 124826370 T A NCOR2 Silent p.R1729R 0.40 TCGA-50-5946-01 12 124826371 124826371 C A NCOR2 Missense_Mutation p.R1729L 0.40 possibly_damaging(0.704) TCGA-50-5946-01 12 125298921 125298921 T C SCARB1 Missense_Mutation p.M153V 0.34 tolerated(0.49) benign(0.002) TCGA-50-5946-01 12 130855910 130855910 T A PIWIL1 Intron 0.48 TCGA-50-5946-01 12 21329807 21329807 G C SLCO1B1 Missense_Mutation p.A153P 0.16 tolerated(0.14) benign(0.003) TCGA-50-5946-01 12 29460731 29460731 C A FAR2 Missense_Mutation p.P229H 0.19 deleterious(0) probably_damaging(1) TCGA-50-5946-01 12 29604451 29604451 G T OVCH1 Missense_Mutation p.P861Q 0.09 deleterious(0) possibly_damaging(0.874) TCGA-50-5946-01 12 31244773 31244773 G T DDX11 Missense_Mutation p.G404C 0.16 tolerated(0.36) benign(0.029) TCGA-50-5946-01 12 42866314 42866314 G A PRICKLE1 Missense_Mutation p.P2L 0.25 deleterious(0) benign(0.444) TCGA-50-5946-01 12 45568270 45568270 C A PLEKHA8P1 RNA 0.14 TCGA-50-5946-01 12 49315284 49315284 C G CCDC65 3'UTR 0.15 TCGA-50-5946-01 12 50027765 50027765 C T PRPF40B Silent p.P234P 0.19 TCGA-50-5946-01 12 50291869 50291869 G A FAIM2 Silent p.S72S 0.06 TCGA-50-5946-01 12 50291871 50291871 T A FAIM2 Missense_Mutation p.S72C 0.07 tolerated(0.08) benign(0.237) TCGA-50-5946-01 12 51696543 51696543 C T BIN2 Missense_Mutation p.R80K 0.13 tolerated(0.59) benign(0.013) TCGA-50-5946-01 12 53518000 53518000 T C SOAT2 3'UTR 0.21 TCGA-50-5946-01 12 54675922 54675922 G T HNRNPA1 Missense_Mutation p.G110C 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-50-5946-01 12 54917625 54917625 C A NCKAP1L Missense_Mutation p.L681I 0.19 tolerated(0.23) benign(0.005) TCGA-50-5946-01 12 56222273 56222273 G C DNAJC14 Missense_Mutation p.S57C 0.17 deleterious_low_confidence(0) possibly_damaging(0.681) TCGA-50-5946-01 12 5685150 5685150 A T ANO2 Missense_Mutation p.I824N 0.23 deleterious(0) probably_damaging(0.999) TCGA-50-5946-01 12 57599408 57599408 C T LRP1 Silent p.L3846L 0.19 TCGA-50-5946-01 12 57881750 57881750 C T MARS 5'UTR 0.22 TCGA-50-5946-01 12 6926294 6926294 A T CD4 Splice_Site p.X319_splice 0.31 TCGA-50-5946-01 12 69968447 69968447 G T FRS2 Silent p.R413R 0.29 TCGA-50-5946-01 12 85521791 85521791 A G LRRIQ1 Missense_Mutation p.K1397E 0.43 tolerated(0.42) benign(0.134) TCGA-50-5946-01 12 86276113 86276113 G T NTS Missense_Mutation p.R158I 0.37 deleterious(0) probably_damaging(0.999) TCGA-50-5946-01 12 86373396 86373396 C A MGAT4C Missense_Mutation p.G370W 0.64 deleterious(0) probably_damaging(0.996) TCGA-50-5946-01 12 88586450 88586450 G T TMTC3 Silent p.L592L 0.21 TCGA-50-5946-01 12 8998704 8998704 C T A2ML1 Silent p.T523T 0.25 TCGA-50-5946-01 12 95424256 95424256 C T NR2C1 Intron 0.29 TCGA-50-5946-01 13 100191811 100191811 G T TM9SF2 Missense_Mutation p.E276D 0.46 tolerated(0.11) benign(0.297) TCGA-50-5946-01 13 101020767 101020767 C T PCCA Missense_Mutation p.S562L 0.47 tolerated(0.67) benign(0.009) TCGA-50-5946-01 13 102051452 102051452 C T NALCN Missense_Mutation p.R9K 0.41 tolerated(0.52) benign(0.019) TCGA-50-5946-01 13 103718646 103718646 C A SLC10A2 5'UTR 0.49 TCGA-50-5946-01 13 109614001 109614001 C G MYO16 Missense_Mutation p.Q696E 0.47 tolerated(0.06) possibly_damaging(0.641) TCGA-50-5946-01 13 113975931 113975931 T C LAMP1 Missense_Mutation p.S335P 0.40 deleterious(0) probably_damaging(1) TCGA-50-5946-01 13 25458536 25458536 C T CENPJ Silent p.V1181V 0.36 TCGA-50-5946-01 13 31543078 31543078 A G TEX26 Missense_Mutation p.T235A 0.41 deleterious(0.04) benign(0.39) TCGA-50-5946-01 13 32910782 32910782 G A BRCA2 Missense_Mutation p.E764K 0.41 tolerated(0.54) benign(0.037) TCGA-50-5946-01 13 37446930 37446930 C A SMAD9 Missense_Mutation p.D179Y 0.40 tolerated(0.15) benign(0.057) TCGA-50-5946-01 13 39546705 39546705 C A STOML3 Missense_Mutation p.D86Y 0.45 deleterious(0) probably_damaging(0.989) TCGA-50-5946-01 13 64321150 64321150 G T AL445989.1 Missense_Mutation p.G73C 0.33 unknown(0) TCGA-50-5946-01 13 79216266 79216266 T A RNF219 Missense_Mutation p.K97N 0.40 tolerated(0.1) benign(0.043) TCGA-50-5946-01 13 84454601 84454601 C A SLITRK1 Missense_Mutation p.D348Y 0.37 deleterious(0.01) benign(0.081) TCGA-50-5946-01 13 96205054 96205054 C T CLDN10 Missense_Mutation p.S16L 0.38 tolerated(0.25) benign(0.006) TCGA-50-5946-01 14 105410123 105410123 C T AHNAK2 Missense_Mutation p.V3889M 0.30 possibly_damaging(0.492) TCGA-50-5946-01 14 105410247 105410247 C G AHNAK2 Missense_Mutation p.K3847N 0.29 probably_damaging(0.973) TCGA-50-5946-01 14 105410772 105410772 C G AHNAK2 Silent p.V3672V 0.26 TCGA-50-5946-01 14 20019735 20019735 C A POTEM Missense_Mutation p.K162N 0.33 deleterious(0.05) benign(0.008) TCGA-50-5946-01 14 20249193 20249193 G T OR4M1 Missense_Mutation p.A238S 0.05 deleterious(0) probably_damaging(0.99) TCGA-50-5946-01 14 20296227 20296227 C A OR4N2 Missense_Mutation p.T207K 0.07 deleterious(0.02) possibly_damaging(0.598) TCGA-50-5946-01 14 20389173 20389173 G C OR4K5 Missense_Mutation p.M136I 0.08 deleterious(0.05) possibly_damaging(0.722) TCGA-50-5946-01 14 20482436 20482436 C G OR4K14 Missense_Mutation p.R306P 0.16 deleterious(0.04) benign(0.031) TCGA-50-5946-01 14 20666364 20666364 C T OR11G2 Silent p.Y290Y 0.21 TCGA-50-5946-01 14 20781910 20781910 G A CCNB1IP1 Silent p.G116G 0.19 TCGA-50-5946-01 14 23397790 23397790 G A PRMT5 Missense_Mutation p.R49C 0.30 deleterious(0.01) probably_damaging(0.98) TCGA-50-5946-01 14 23746388 23746388 C G HOMEZ Missense_Mutation p.E17Q 0.27 deleterious_low_confidence(0.02) benign(0.432) TCGA-50-5946-01 14 23852437 23852437 C T MYH6 Silent p.E1886E 0.13 TCGA-50-5946-01 14 23855254 23855254 C A MYH6 Silent p.L1682L 0.06 TCGA-50-5946-01 14 24529184 24529184 A G LRRC16B Missense_Mutation p.H625R 0.14 tolerated(0.09) benign(0.008) TCGA-50-5946-01 14 25043566 25043566 C A CTSG Missense_Mutation p.R160L 0.38 deleterious(0.02) possibly_damaging(0.507) TCGA-50-5946-01 14 30068938 30068938 C A PRKD1 Missense_Mutation p.G664V 0.33 deleterious(0) probably_damaging(0.997) TCGA-50-5946-01 14 34904443 34904443 G C SPTSSA Missense_Mutation p.I60M 0.16 deleterious(0.01) possibly_damaging(0.837) TCGA-50-5946-01 14 42360759 42360759 C A LRFN5 Silent p.T564T 0.11 TCGA-50-5946-01 14 44976002 44976002 C A FSCB Missense_Mutation p.K63N 0.17 deleterious(0) probably_damaging(0.999) TCGA-50-5946-01 14 50760867 50760867 T A L2HGDH Missense_Mutation p.Q169L 0.16 tolerated(0.15) benign(0.102) TCGA-50-5946-01 14 51224033 51224033 C G NIN Missense_Mutation p.E1239Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-50-5946-01 14 52458074 52458074 A G C14orf166 Missense_Mutation p.D34G 0.19 deleterious(0) probably_damaging(0.981) TCGA-50-5946-01 14 59930496 59930496 T C GPR135 Silent p.K483K 0.14 TCGA-50-5946-01 14 64444719 64444719 G C SYNE2 Missense_Mutation p.E464Q 0.18 possibly_damaging(0.86) TCGA-50-5946-01 14 64630226 64630226 C A SYNE2 Missense_Mutation p.P5469Q 0.27 possibly_damaging(0.605) TCGA-50-5946-01 14 69349271 69349271 C A ACTN1 Silent p.T619T 0.24 TCGA-50-5946-01 14 77294763 77294763 G A C14orf166B Splice_Site p.X73_splice 0.17 TCGA-50-5946-01 14 91942820 91942820 G C SMEK1 Missense_Mutation p.Q348E 0.07 tolerated(0.14) possibly_damaging(0.83) TCGA-50-5946-01 14 94929366 94929366 G T SERPINA9 3'UTR 0.14 TCGA-50-5946-01 14 95033556 95033556 G T SERPINA4 Missense_Mutation p.R300M 0.39 deleterious(0) probably_damaging(0.993) TCGA-50-5946-01 14 95934283 95934283 C T SYNE3 Missense_Mutation p.E56K 0.39 deleterious(0) possibly_damaging(0.79) TCGA-50-5946-01 15 102359139 102359139 C G OR4F15 Missense_Mutation p.F250L 0.24 deleterious_low_confidence(0) possibly_damaging(0.816) TCGA-50-5946-01 15 23889700 23889700 G T MAGEL2 Missense_Mutation p.R461S 0.27 deleterious(0.01) probably_damaging(0.922) TCGA-50-5946-01 15 24923034 24923034 C G NPAP1 Missense_Mutation p.P674A 0.24 tolerated(1) benign(0) TCGA-50-5946-01 15 28388005 28388005 C A HERC2 Missense_Mutation p.G3838C 0.36 possibly_damaging(0.5) TCGA-50-5946-01 15 34016357 34016357 C A RYR3 Missense_Mutation p.R2298S 0.36 probably_damaging(0.999) TCGA-50-5946-01 15 35168139 35168139 T A AQR Silent p.L1078L 0.20 TCGA-50-5946-01 15 40630951 40630951 C G C15orf52 Missense_Mutation p.E173Q 0.26 deleterious(0.04) benign(0.407) TCGA-50-5946-01 15 40920853 40920853 A G CASC5 Missense_Mutation p.I1880V 0.17 tolerated(0.17) possibly_damaging(0.481) TCGA-50-5946-01 15 42441919 42441919 T G PLA2G4F Missense_Mutation p.S351R 0.23 tolerated(0.46) benign(0.001) TCGA-50-5946-01 15 43513011 43513011 C A EPB42 Nonsense_Mutation p.E5* 0.23 TCGA-50-5946-01 15 49716577 49716577 T C FGF7 Missense_Mutation p.I28T 0.24 tolerated(0.17) benign(0.007) TCGA-50-5946-01 15 54307611 54307611 T A UNC13C Silent p.S837S 0.19 TCGA-50-5946-01 15 64067101 64067101 G A HERC1 Missense_Mutation p.T241I 0.20 benign(0.001) TCGA-50-5946-01 15 65563307 65563307 T A PARP16 Missense_Mutation p.K93M 0.27 deleterious(0) possibly_damaging(0.905) TCGA-50-5946-01 15 69076789 69076789 G A ANP32A Missense_Mutation p.S158L 0.15 deleterious(0.02) benign(0.069) TCGA-50-5946-01 15 69737240 69737240 G A KIF23 Missense_Mutation p.E831K 0.30 tolerated(0.11) benign(0.06) TCGA-50-5946-01 15 73418810 73418810 C A NEO1 Silent p.V259V 0.38 TCGA-50-5946-01 15 74032391 74032391 G T C15orf59 Nonsense_Mutation p.S250* 0.24 TCGA-50-5946-01 15 74328155 74328155 G T PML Intron 0.51 TCGA-50-5946-01 15 77240793 77240793 G C RCN2 Missense_Mutation p.R234T 0.24 deleterious(0) probably_damaging(0.995) TCGA-50-5946-01 15 90226656 90226656 T A PEX11A Silent p.A232A 0.49 TCGA-50-5946-01 15 99874294 99874294 G T LRRC28 Missense_Mutation p.E184D 0.42 deleterious(0.02) possibly_damaging(0.773) TCGA-50-5946-01 16 15865442 15865442 G T MYH11 Missense_Mutation p.S346R 0.38 benign(0.108) TCGA-50-5946-01 16 2051678 2051678 C T ZNF598 Missense_Mutation p.E307K 0.50 probably_damaging(0.988) TCGA-50-5946-01 16 21110000 21110000 C T DNAH3 Silent p.K819K 0.45 TCGA-50-5946-01 16 23101960 23101960 C A USP31 Missense_Mutation p.G467V 0.43 deleterious(0) probably_damaging(1) TCGA-50-5946-01 16 30035594 30035594 C A C16orf92 3'UTR 0.48 TCGA-50-5946-01 16 53524240 53524240 C G RBL2 3'UTR 0.44 TCGA-50-5946-01 16 66836859 66836859 G A NAE1 3'UTR 0.38 TCGA-50-5946-01 16 67433330 67433330 C A ZDHHC1 Missense_Mutation p.C153F 0.62 deleterious(0) probably_damaging(1) TCGA-50-5946-01 16 73127415 73127415 C T HCCAT5 RNA 0.27 TCGA-50-5946-01 16 76501290 76501290 C G CNTNAP4 Missense_Mutation p.L436V 0.55 tolerated(0.31) benign(0.012) TCGA-50-5946-01 16 81087660 81087660 G T RP11-303E16.5 5'Flank 0.46 TCGA-50-5946-01 16 81134711 81134711 G T GCSH 5'Flank 0.39 TCGA-50-5946-01 16 81304005 81304006 CC T BCMO1 Frame_Shift_Del p.P362Lfs*14 0.31 TCGA-50-5946-01 16 86601304 86601304 C A FOXC2 Silent p.R121R 0.43 TCGA-50-5946-01 16 86601305 86601305 C A FOXC2 Missense_Mutation p.H122N 0.45 deleterious(0) probably_damaging(0.992) TCGA-50-5946-01 16 87866412 87866412 C G SLC7A5 3'UTR 0.31 TCGA-50-5946-01 17 10301946 10301946 G T MYH8 Silent p.A1331A 0.49 TCGA-50-5946-01 17 10304651 10304651 C A MYH8 Nonsense_Mutation p.E1017* 0.15 TCGA-50-5946-01 17 10322009 10322009 G T MYH8 Missense_Mutation p.P155H 0.42 deleterious(0) probably_damaging(0.971) TCGA-50-5946-01 17 10419768 10419768 G C MYH1 Silent p.T64T 0.45 TCGA-50-5946-01 17 10426411 10426411 T A MYH2 Missense_Mutation p.E1890V 0.15 deleterious(0.04) probably_damaging(0.968) TCGA-50-5946-01 17 10438476 10438476 C G MYH2 Missense_Mutation p.Q698H 0.13 deleterious(0) probably_damaging(0.993) TCGA-50-5946-01 17 10542427 10542427 T A MYH3 Missense_Mutation p.K1061M 0.49 deleterious(0.01) probably_damaging(0.99) TCGA-50-5946-01 17 11543598 11543598 G T DNAH9 Missense_Mutation p.V600L 0.16 benign(0.012) TCGA-50-5946-01 17 11872804 11872804 A T DNAH9 Missense_Mutation p.K4474M 0.13 probably_damaging(0.997) TCGA-50-5946-01 17 25974419 25974419 G A LGALS9 Silent p.L294L 0.10 TCGA-50-5946-01 17 26942038 26942038 G C KIAA0100 3'UTR 0.13 TCGA-50-5946-01 17 28758861 28758861 G A CPD Missense_Mutation p.D697N 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-50-5946-01 17 28886665 28886665 A G TBC1D29 5'UTR 0.18 TCGA-50-5946-01 17 29586106 29586106 T - NF1 Frame_Shift_Del p.F1464Sfs*5 0.35 TCGA-50-5946-01 17 32964618 32964618 G T TMEM132E Silent p.V774V 0.19 TCGA-50-5946-01 17 3446814 3446814 C T TRPV3 Silent p.V140V 0.19 TCGA-50-5946-01 17 39261729 39261729 G A KRTAP4-9 Missense_Mutation p.C30Y 0.24 deleterious(0) unknown(0) TCGA-50-5946-01 17 39406209 39406209 C A KRTAP9-4 Silent p.P79P 0.29 TCGA-50-5946-01 17 39670279 39670279 A G KRT15 Missense_Mutation p.I456T 0.10 deleterious(0) benign(0.298) TCGA-50-5946-01 17 41141522 41141522 C G RUNDC1 Missense_Mutation p.I274M 0.09 deleterious(0) probably_damaging(0.999) TCGA-50-5946-01 17 41143735 41143735 G T RUNDC1 3'UTR 0.46 TCGA-50-5946-01 17 42169194 42169194 G A HDAC5 Silent p.L347L 0.12 TCGA-50-5946-01 17 43159018 43159018 G C NMT1 Missense_Mutation p.L46F 0.15 tolerated_low_confidence(0.18) benign(0.202) TCGA-50-5946-01 17 4349376 4349376 G A SPNS3 Missense_Mutation p.V146M 0.60 deleterious(0.02) probably_damaging(0.928) TCGA-50-5946-01 17 46423342 46423342 C G SKAP1 Missense_Mutation p.D69H 0.13 deleterious(0) probably_damaging(0.973) TCGA-50-5946-01 17 46654168 46654168 G - HOXB4 Frame_Shift_Del p.N225Tfs*44 0.19 TCGA-50-5946-01 17 5073935 5073935 G - USP6 Frame_Shift_Del p.A1227Pfs*17 0.17 TCGA-50-5946-01 17 5377960 5377960 C A DERL2 3'UTR 0.20 TCGA-50-5946-01 17 54978923 54978923 C A TRIM25 Missense_Mutation p.R315L 0.40 deleterious(0.01) benign(0.178) TCGA-50-5946-01 17 56344792 56344792 G A LPO Missense_Mutation p.M592I 0.10 tolerated(0.14) benign(0.004) TCGA-50-5946-01 17 56690783 56690783 C A TEX14 Missense_Mutation p.R341L 0.23 deleterious(0.01) probably_damaging(0.975) TCGA-50-5946-01 17 56707800 56707800 C A TEX14 Splice_Site p.X84_splice 0.29 TCGA-50-5946-01 17 59161843 59161843 C T BCAS3 Silent p.R796R 0.41 TCGA-50-5946-01 17 60342568 60342568 C T TBC1D3P2 3'Flank 0.12 TCGA-50-5946-01 17 60754710 60754710 C T MRC2 Missense_Mutation p.R639W 0.29 deleterious(0.01) benign(0.077) TCGA-50-5946-01 17 60814269 60814269 C G MARCH10 Silent p.G320G 0.27 TCGA-50-5946-01 17 6331766 6331766 G A AIPL1 Missense_Mutation p.P113S 0.62 deleterious(0) probably_damaging(0.982) TCGA-50-5946-01 17 6524186 6524186 C G KIAA0753 Missense_Mutation p.E413Q 0.16 tolerated(0.09) benign(0.008) TCGA-50-5946-01 17 6524258 6524258 C T KIAA0753 Missense_Mutation p.E389K 0.13 tolerated(0.35) benign(0.345) TCGA-50-5946-01 17 6913428 6913428 C A ALOX12 Missense_Mutation p.R599S 0.48 deleterious(0) possibly_damaging(0.902) TCGA-50-5946-01 17 72737000 72737000 G T RAB37 Missense_Mutation p.V68F 0.33 deleterious(0) probably_damaging(0.984) TCGA-50-5946-01 17 72920958 72920958 C A OTOP2 Silent p.I77I 0.21 TCGA-50-5946-01 17 7366181 7366181 C T ZBTB4 Nonsense_Mutation p.W707* 0.14 TCGA-50-5946-01 17 73900723 73900723 C A MRPL38 Nonsense_Mutation p.E49* 0.43 TCGA-50-5946-01 17 74093885 74093885 C G EXOC7 Missense_Mutation p.R211P 0.25 tolerated(0.06) benign(0.412) TCGA-50-5946-01 17 7578458 7578458 G - TP53 Frame_Shift_Del p.R158Afs*12 0.39 TCGA-50-5946-01 17 7720664 7720664 C G DNAH2 Missense_Mutation p.F3317L 0.12 possibly_damaging(0.703) TCGA-50-5946-01 17 78032423 78032423 C G CCDC40 Missense_Mutation p.I430M 0.13 tolerated(1) benign(0.003) TCGA-50-5946-01 17 79954395 79954395 G T ASPSCR1 Missense_Mutation p.L202F 0.35 tolerated(0.08) unknown(0) TCGA-50-5946-01 17 8169275 8169275 G T PFAS Missense_Mutation p.D881Y 0.45 deleterious(0) probably_damaging(0.971) TCGA-50-5946-01 18 12718551 12718551 C G PSMG2 Silent p.S108S 0.15 TCGA-50-5946-01 18 13056289 13056289 C T CEP192 Missense_Mutation p.H1234Y 0.22 tolerated(1) benign(0.004) TCGA-50-5946-01 18 19239163 19239163 A G ABHD3 Silent p.Y270Y 0.51 TCGA-50-5946-01 18 72183560 72183560 G T CNDP2 Missense_Mutation p.R334M 0.31 deleterious(0.02) benign(0.056) TCGA-50-5946-01 18 72183561 72183561 G T CNDP2 Missense_Mutation p.R334S 0.31 tolerated(0.23) benign(0.008) TCGA-50-5946-01 19 10220645 10220645 A T PPAN Missense_Mutation p.E216V 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-50-5946-01 19 10362929 10362929 G C MRPL4 5'UTR 0.27 TCGA-50-5946-01 19 12273953 12273953 G T ZNF136 5'UTR 0.44 TCGA-50-5946-01 19 13476192 13476192 T A CACNA1A Silent p.A241A 0.34 TCGA-50-5946-01 19 14815928 14815928 G C ZNF333 Missense_Mutation p.L123F 0.21 tolerated_low_confidence(0.24) benign(0.012) TCGA-50-5946-01 19 15770154 15770154 G - CYP4F3 Frame_Shift_Del p.A508Qfs*12 0.18 TCGA-50-5946-01 19 17081794 17081794 T C CPAMD8 Missense_Mutation p.Q754R 0.06 tolerated(0.13) benign(0.029) TCGA-50-5946-01 19 17265172 17265172 G C MYO9B Missense_Mutation p.E382D 0.17 deleterious(0.01) benign(0.068) TCGA-50-5946-01 19 17346351 17346351 C T NR2F6 Silent p.S299S 0.12 TCGA-50-5946-01 19 19338836 19338836 G T NCAN Nonsense_Mutation p.G803* 0.11 TCGA-50-5946-01 19 19369511 19369511 C A HAPLN4 Missense_Mutation p.W213L 0.29 deleterious(0) probably_damaging(0.999) TCGA-50-5946-01 19 19625531 19625531 G C TSSK6 Missense_Mutation p.L236V 0.08 tolerated(0.15) benign(0.022) TCGA-50-5946-01 19 21909963 21909963 C A ZNF100 Missense_Mutation p.R384L 0.12 tolerated(0.68) possibly_damaging(0.518) TCGA-50-5946-01 19 21992413 21992413 C T ZNF43 Silent p.Q142Q 0.16 TCGA-50-5946-01 19 22940945 22940945 C G ZNF99 Missense_Mutation p.G589A 0.33 deleterious(0.02) benign(0.01) TCGA-50-5946-01 19 23170131 23170131 C T ZNF728 Missense_Mutation p.E69K 0.15 tolerated(0.11) possibly_damaging(0.621) TCGA-50-5946-01 19 23836135 23836135 T A ZNF675 Nonsense_Mutation p.K534* 0.14 TCGA-50-5946-01 19 2877386 2877386 G T ZNF556 Missense_Mutation p.V144L 0.38 tolerated(0.44) benign(0.008) TCGA-50-5946-01 19 31048263 31048263 C A ZNF536 3'UTR 0.44 TCGA-50-5946-01 19 35551066 35551066 C G HPN Missense_Mutation p.I149M 0.13 tolerated(0.1) benign(0.031) TCGA-50-5946-01 19 35644918 35644918 C T FXYD7 3'UTR 0.23 TCGA-50-5946-01 19 35646481 35646481 C G FXYD5 Missense_Mutation p.L10V 0.17 deleterious(0.05) possibly_damaging(0.794) TCGA-50-5946-01 19 36279065 36279065 G A ARHGAP33 Missense_Mutation p.G1039S 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-50-5946-01 19 38817495 38817495 C A KCNK6 Silent p.L195L 0.34 TCGA-50-5946-01 19 38951174 38951174 C T RYR1 Silent p.G840G 0.55 TCGA-50-5946-01 19 42373137 42373137 C T RPS19 Missense_Mutation p.A70V 0.26 tolerated(1) benign(0.019) TCGA-50-5946-01 19 44570538 44570538 G A ZNF223 Missense_Mutation p.C186Y 0.44 tolerated(1) possibly_damaging(0.615) TCGA-50-5946-01 19 44680611 44680611 G C ZNF226 Missense_Mutation p.S399T 0.20 deleterious(0.05) benign(0.032) TCGA-50-5946-01 19 46094994 46094994 C G GPR4 Missense_Mutation p.R44P 0.17 deleterious(0) possibly_damaging(0.86) TCGA-50-5946-01 19 46178215 46178215 G A GIPR Intron 0.08 TCGA-50-5946-01 19 50781447 50781447 G A MYH14 Silent p.R1311R 0.33 TCGA-50-5946-01 19 53754815 53754815 C G ZNF677 5'UTR 0.22 TCGA-50-5946-01 19 53855182 53855182 G T ZNF845 Missense_Mutation p.K418N 0.23 deleterious(0) probably_damaging(0.995) TCGA-50-5946-01 19 54313166 54313166 C A NLRP12 Missense_Mutation p.V583F 0.55 deleterious(0.05) benign(0.319) TCGA-50-5946-01 19 54647870 54647870 G C CNOT3 Silent p.T129T 0.21 TCGA-50-5946-01 19 55421425 55421425 G T NCR1 Missense_Mutation p.A228S 0.52 tolerated(0.84) benign(0.004) TCGA-50-5946-01 19 57967675 57967675 G T VN1R1 Silent p.I60I 0.38 TCGA-50-5946-01 19 58132744 58132744 G C ZNF134 Missense_Mutation p.Q419H 0.22 tolerated(0.12) probably_damaging(0.983) TCGA-50-5946-01 19 58549468 58549468 C A ZSCAN1 Silent p.G88G 0.43 TCGA-50-5946-01 19 58565352 58565352 A G ZSCAN1 Missense_Mutation p.K387R 0.50 deleterious(0) probably_damaging(0.996) TCGA-50-5946-01 19 7117070 7117070 G A INSR Silent p.S1382S 0.15 TCGA-50-5946-01 19 7571041 7571041 G T C19orf45 Silent p.R399R 0.68 TCGA-50-5946-01 19 814458 814458 G A LPPR3 Silent p.I297I 0.21 TCGA-50-5946-01 19 9059705 9059705 T G MUC16 Silent p.T9247T 0.07 TCGA-50-5946-01 19 9069789 9069789 C G MUC16 Missense_Mutation p.W5886S 0.15 unknown(0) TCGA-50-5946-01 19 9091776 9091776 G T MUC16 Silent p.P13P 0.14 TCGA-50-5946-01 19 9362458 9362458 C A OR7E24 Missense_Mutation p.P247T 0.40 deleterious(0.02) possibly_damaging(0.904) TCGA-50-5946-01 1 107973434 107973434 T C NTNG1 Missense_Mutation p.C384R 0.24 deleterious(0.02) benign(0.014) TCGA-50-5946-01 1 111984672 111984672 C T WDR77 Missense_Mutation p.V282M 0.21 deleterious(0) probably_damaging(0.94) TCGA-50-5946-01 1 11736959 11736959 C G MAD2L2 Missense_Mutation p.R93P 0.17 tolerated(0.27) benign(0.021) TCGA-50-5946-01 1 120336761 120336761 A T REG4 3'UTR 0.12 TCGA-50-5946-01 1 120438009 120438009 A G ADAM30 Silent p.Y317Y 0.15 TCGA-50-5946-01 1 120484160 120484160 C G NOTCH2 Missense_Mutation p.E990D 0.12 tolerated(1) probably_damaging(0.99) TCGA-50-5946-01 1 12065890 12065890 G C MFN2 Missense_Mutation p.D540H 0.21 deleterious(0) probably_damaging(0.998) TCGA-50-5946-01 1 145304530 145304530 C G NBPF10 Missense_Mutation p.S488C 0.05 possibly_damaging(0.824) TCGA-50-5946-01 1 150240369 150240369 T C APH1A Missense_Mutation p.Y91C 0.09 deleterious(0) probably_damaging(0.947) TCGA-50-5946-01 1 150957060 150957060 A G ANXA9 Splice_Site p.X128_splice 0.11 TCGA-50-5946-01 1 152552268 152552268 C T LCE3D Missense_Mutation p.E49K 0.11 tolerated_low_confidence(0.09) unknown(0) TCGA-50-5946-01 1 152732513 152732513 T G KPRP Missense_Mutation p.V150G 0.16 tolerated(0.1) benign(0.011) TCGA-50-5946-01 1 154224028 154224028 G C UBAP2L Missense_Mutation p.L521F 0.17 deleterious(0.02) unknown(0) TCGA-50-5946-01 1 154841865 154841865 G A KCNN3 Silent p.S192S 0.13 TCGA-50-5946-01 1 155365329 155365329 C G ASH1L Missense_Mutation p.L2008F 0.13 deleterious_low_confidence(0.04) possibly_damaging(0.579) TCGA-50-5946-01 1 157670334 157670334 A T FCRL3 5'UTR 0.11 TCGA-50-5946-01 1 158057874 158057874 G A KIRREL Silent p.T282T 0.14 TCGA-50-5946-01 1 158626354 158626354 C A SPTA1 Missense_Mutation p.Q966H 0.26 deleterious(0.02) probably_damaging(0.912) TCGA-50-5946-01 1 158735829 158735829 A C OR6N1 Missense_Mutation p.L215R 0.10 tolerated(0.06) probably_damaging(0.913) TCGA-50-5946-01 1 158813865 158813865 C A MNDA Missense_Mutation p.L175I 0.11 tolerated(0.42) benign(0.034) TCGA-50-5946-01 1 160465865 160465865 G T SLAMF6 Missense_Mutation p.T123N 0.13 tolerated(0.24) benign(0.257) TCGA-50-5946-01 1 160786534 160786534 G A LY9 Missense_Mutation p.G408E 0.13 tolerated(0.9) benign(0.291) TCGA-50-5946-01 1 16255239 16255239 C G SPEN Missense_Mutation p.S835C 0.21 possibly_damaging(0.838) TCGA-50-5946-01 1 162724539 162724539 G T DDR2 Missense_Mutation p.G104V 0.17 deleterious(0) probably_damaging(1) TCGA-50-5946-01 1 162729671 162729671 G A DDR2 Missense_Mutation p.G253S 0.24 deleterious(0) probably_damaging(1) TCGA-50-5946-01 1 167023533 167023533 C A GPA33 3'UTR 0.13 TCGA-50-5946-01 1 169831877 169831877 G A SCYL3 Silent p.I339I 0.03 TCGA-50-5946-01 1 179078350 179078350 T C ABL2 Silent p.E684E 0.10 TCGA-50-5946-01 1 179347772 179347772 G T AXDND1 Missense_Mutation p.R125S 0.07 deleterious(0) possibly_damaging(0.587) TCGA-50-5946-01 1 183086535 183086535 G T LAMC1 Missense_Mutation p.V549L 0.27 tolerated(0.46) benign(0.022) TCGA-50-5946-01 1 183387360 183387360 C A NMNAT2 Missense_Mutation p.G15C 0.12 deleterious(0) probably_damaging(1) TCGA-50-5946-01 1 183387421 183387421 G A NMNAT2 5'UTR 0.05 TCGA-50-5946-01 1 183616935 183616935 G T APOBEC4 Missense_Mutation p.Q328K 0.08 tolerated(0.73) benign(0.003) TCGA-50-5946-01 1 186024552 186024552 G T HMCN1 Missense_Mutation p.S2297I 0.20 benign(0.424) TCGA-50-5946-01 1 186375225 186375225 A G C1orf27 Silent p.K337K 0.12 TCGA-50-5946-01 1 186934719 186934719 G T PLA2G4A Silent p.P586P 0.38 TCGA-50-5946-01 1 196695992 196695992 T A CFH Missense_Mutation p.S720T 0.14 tolerated(0.63) benign(0.007) TCGA-50-5946-01 1 200969556 200969556 C T KIF21B Silent p.E549E 0.11 TCGA-50-5946-01 1 201380626 201380626 A T TNNI1 Silent p.R105R 0.11 TCGA-50-5946-01 1 202245542 202245542 C A LGR6 Silent p.V179V 0.28 TCGA-50-5946-01 1 204083468 204083468 G T SOX13 Missense_Mutation p.G80V 0.12 tolerated(0.09) benign(0) TCGA-50-5946-01 1 205053409 205053409 C A TMEM81 Missense_Mutation p.G14W 0.19 tolerated(0.12) possibly_damaging(0.598) TCGA-50-5946-01 1 205693063 205693063 G A NUCKS1 Missense_Mutation p.H74Y 0.10 tolerated(0.2) possibly_damaging(0.607) TCGA-50-5946-01 1 207196408 207196408 G C C1orf116 Missense_Mutation p.S234C 0.17 tolerated(0.08) possibly_damaging(0.62) TCGA-50-5946-01 1 208072542 208072542 C A CD34 Missense_Mutation p.V98L 0.20 tolerated(0.11) benign(0.019) TCGA-50-5946-01 1 209799177 209799177 G A LAMB3 Missense_Mutation p.R598C 0.27 deleterious(0) probably_damaging(0.983) TCGA-50-5946-01 1 209950826 209950826 C A TRAF3IP3 Missense_Mutation p.L395I 0.11 tolerated(0.6) possibly_damaging(0.689) TCGA-50-5946-01 1 214816222 214816222 G T CENPF Missense_Mutation p.G1514V 0.16 possibly_damaging(0.859) TCGA-50-5946-01 1 215823984 215823984 C T USH2A Missense_Mutation p.V4765I 0.10 benign(0.002) TCGA-50-5946-01 1 215953373 215953373 G A USH2A Missense_Mutation p.A3584V 0.15 benign(0.02) TCGA-50-5946-01 1 227261685 227261685 G A CDC42BPA Missense_Mutation p.A872V 0.05 deleterious(0.04) benign(0.105) TCGA-50-5946-01 1 230459140 230459140 C T PGBD5 3'UTR 0.19 TCGA-50-5946-01 1 233514942 233514942 G T MLK4 Silent p.L730L 0.14 TCGA-50-5946-01 1 236212255 236212255 G T NID1 Missense_Mutation p.P87H 0.07 deleterious(0.01) probably_damaging(1) TCGA-50-5946-01 1 237791208 237791208 C T RYR2 Missense_Mutation p.R2090W 0.13 probably_damaging(1) TCGA-50-5946-01 1 237881781 237881781 T A RYR2 Missense_Mutation p.V3505E 0.21 benign(0.434) TCGA-50-5946-01 1 237947703 237947703 C A RYR2 Missense_Mutation p.P4231T 0.24 benign(0) TCGA-50-5946-01 1 237948083 237948083 C A RYR2 Silent p.A4357A 0.08 TCGA-50-5946-01 1 241665814 241665814 C A FH Missense_Mutation p.G389W 0.08 deleterious(0) probably_damaging(1) TCGA-50-5946-01 1 244715699 244715699 G T C1orf101 Missense_Mutation p.Q204H 0.27 deleterious(0.02) probably_damaging(0.973) TCGA-50-5946-01 1 247695121 247695121 T A OR2C3 Silent p.S231S 0.21 TCGA-50-5946-01 1 247835634 247835634 G T OR13G1 Missense_Mutation p.T237K 0.39 deleterious(0) possibly_damaging(0.76) TCGA-50-5946-01 1 247978617 247978617 A T OR14A16 Missense_Mutation p.C139S 0.18 deleterious(0.01) probably_damaging(1) TCGA-50-5946-01 1 248084564 248084564 A G OR2T8 Missense_Mutation p.D82G 0.41 tolerated(0.39) benign(0.005) TCGA-50-5946-01 1 248202347 248202347 C A OR2L2 Missense_Mutation p.R260S 0.13 deleterious(0.03) possibly_damaging(0.524) TCGA-50-5946-01 1 248262995 248262995 G T OR2L13 Missense_Mutation p.M106I 0.14 deleterious(0.04) benign(0.005) TCGA-50-5946-01 1 248436872 248436872 T C OR2T33 Missense_Mutation p.D82G 0.09 tolerated(0.35) benign(0.003) TCGA-50-5946-01 1 249211209 249211209 G T PGBD2 Silent p.V142V 0.41 TCGA-50-5946-01 1 28209155 28209155 C T THEMIS2 Silent p.Y440Y 0.25 TCGA-50-5946-01 1 34180301 34180301 C A CSMD2 Missense_Mutation p.G1058C 0.20 deleterious(0) probably_damaging(0.999) TCGA-50-5946-01 1 36026229 36026229 G A NCDN Silent p.L159L 0.12 TCGA-50-5946-01 1 36358880 36358880 G T AGO1 Splice_Site p.X171_splice 0.14 TCGA-50-5946-01 1 36926372 36926372 C G MRPS15 Missense_Mutation p.E102D 0.17 tolerated(0.05) probably_damaging(0.982) TCGA-50-5946-01 1 47685431 47685431 A G TAL1 Silent p.P319P 0.25 TCGA-50-5946-01 1 54371895 54371895 C A DIO1 Missense_Mutation p.N203K 0.24 deleterious(0) probably_damaging(0.998) TCGA-50-5946-01 1 57411654 57411654 G T C8B Nonsense_Mutation p.Y315* 0.18 TCGA-50-5946-01 1 62740245 62740245 C G KANK4 Missense_Mutation p.E177D 0.19 tolerated(0.36) possibly_damaging(0.685) TCGA-50-5946-01 1 67288175 67288175 C A WDR78 Missense_Mutation p.A789S 0.15 deleterious(0.01) benign(0.178) TCGA-50-5946-01 1 68906565 68906565 T C RPE65 Missense_Mutation p.N205S 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-50-5946-01 1 75172879 75172879 C T CRYZ Missense_Mutation p.G214S 0.06 tolerated(0.16) benign(0.051) TCGA-50-5946-01 1 78326966 78326966 G A FAM73A Missense_Mutation p.D445N 0.39 tolerated(0.16) possibly_damaging(0.856) TCGA-50-5946-01 1 79102761 79102761 C T IFI44L Silent p.I307I 0.15 TCGA-50-5946-01 1 8074163 8074163 C T ERRFI1 Missense_Mutation p.D166N 0.28 deleterious(0.01) benign(0.11) TCGA-50-5946-01 1 82408728 82408728 C A LPHN2 Missense_Mutation p.A158D 0.19 deleterious(0.04) possibly_damaging(0.637) TCGA-50-5946-01 1 86488523 86488523 C A COL24A1 Missense_Mutation p.G714V 0.25 deleterious(0) probably_damaging(1) TCGA-50-5946-01 1 89654379 89654379 C T GBP4 Silent p.L432L 0.21 TCGA-50-5946-01 1 92515965 92515965 A T EPHX4 Silent p.I232I 0.13 TCGA-50-5946-01 1 97217042 97217042 G T PTBP2 Missense_Mutation p.S34I 0.42 tolerated(0.13) benign(0.054) TCGA-50-5946-01 1 98015271 98015271 T A DPYD Missense_Mutation p.N457Y 0.19 deleterious(0.01) benign(0.127) TCGA-50-5946-01 1 98060631 98060631 G C DPYD Silent p.A314A 0.16 TCGA-50-5946-01 20 16385474 16385474 T A KIF16B Missense_Mutation p.M590L 0.09 tolerated(0.1) probably_damaging(0.988) TCGA-50-5946-01 20 17608196 17608196 C G RRBP1 Missense_Mutation p.E528Q 0.15 deleterious(0.03) possibly_damaging(0.607) TCGA-50-5946-01 20 18396000 18396000 C A DZANK1 Missense_Mutation p.A350S 0.32 deleterious(0.02) possibly_damaging(0.899) TCGA-50-5946-01 20 20140013 20140013 G T C20orf26 Splice_Site p.X318_splice 0.31 TCGA-50-5946-01 20 20226811 20226811 C A C20orf26 Missense_Mutation p.P704Q 0.18 deleterious(0) probably_damaging(0.998) TCGA-50-5946-01 20 25656842 25656842 G T ZNF337 Nonsense_Mutation p.S361* 0.14 TCGA-50-5946-01 20 2988027 2988027 G T PTPRA Silent p.G289G 0.25 TCGA-50-5946-01 20 30386191 30386191 C T TPX2 Nonsense_Mutation p.Q657* 0.16 TCGA-50-5946-01 20 30681810 30681810 G A HCK Missense_Mutation p.A413T 0.11 deleterious(0.03) benign(0.038) TCGA-50-5946-01 20 32438873 32438873 G T CHMP4B Splice_Site p.X161_splice 0.20 TCGA-50-5946-01 20 33875234 33875234 G T FAM83C Silent p.R450R 0.06 TCGA-50-5946-01 20 40033243 40033243 T A CHD6 Missense_Mutation p.D2713V 0.08 deleterious_low_confidence(0) benign(0.004) TCGA-50-5946-01 20 42161455 42161455 G T L3MBTL1 Missense_Mutation p.A421S 0.30 deleterious(0) probably_damaging(0.953) TCGA-50-5946-01 20 42310438 42310438 G T MYBL2 Missense_Mutation p.R43S 0.35 deleterious(0) benign(0.314) TCGA-50-5946-01 20 43057097 43057097 T A HNF4A Missense_Mutation p.C418S 0.12 tolerated_low_confidence(0.33) benign(0.051) TCGA-50-5946-01 20 43530347 43530347 G T YWHAB Missense_Mutation p.R58L 0.17 deleterious_low_confidence(0) possibly_damaging(0.892) TCGA-50-5946-01 20 43945605 43945605 C A RBPJL 3'UTR 0.13 TCGA-50-5946-01 20 44352523 44352523 C A SPINT4 Silent p.P40P 0.20 TCGA-50-5946-01 20 53208316 53208316 A G DOK5 Missense_Mutation p.T191A 0.12 tolerated(1) benign(0) TCGA-50-5946-01 20 55027954 55027954 G T CASS4 Missense_Mutation p.K574N 0.16 deleterious(0) probably_damaging(0.99) TCGA-50-5946-01 20 58564177 58564177 G T CDH26 Silent p.L414L 0.13 TCGA-50-5946-01 20 60504759 60504759 C G CDH4 Missense_Mutation p.L700V 0.61 deleterious(0.04) possibly_damaging(0.573) TCGA-50-5946-01 20 61981793 61981793 T C CHRNA4 Missense_Mutation p.T324A 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-50-5946-01 20 62038269 62038269 C A KCNQ2 Missense_Mutation p.D783Y 0.50 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-50-5946-01 20 7875841 7875841 C T HAO1 Missense_Mutation p.G251D 0.52 deleterious(0.01) possibly_damaging(0.697) TCGA-50-5946-01 20 9368188 9368188 A C PLCB4 Silent p.T381T 0.47 TCGA-50-5946-01 20 9561141 9561141 T A PAK7 Missense_Mutation p.D214V 0.06 tolerated_low_confidence(0.25) benign(0.203) TCGA-50-5946-01 21 10862654 10862654 G T IGHV1OR21-1 Silent p.V11V 0.08 TCGA-50-5946-01 21 10944717 10944717 C T TPTE Missense_Mutation p.D173N 0.09 tolerated(0.38) benign(0.123) TCGA-50-5946-01 21 11049622 11049622 C G BAGE2 Splice_Site 0.03 TCGA-50-5946-01 21 17196427 17196427 G T USP25 Nonsense_Mutation p.G384* 0.29 TCGA-50-5946-01 21 19716293 19716293 T A TMPRSS15 Missense_Mutation p.E419V 0.18 tolerated(0.12) benign(0.089) TCGA-50-5946-01 21 30254550 30254550 C G N6AMT1 Missense_Mutation p.A82P 0.13 probably_damaging(1) TCGA-50-5946-01 21 31655007 31655007 T A KRTAP24-1 Missense_Mutation p.S82C 0.20 tolerated(0.09) probably_damaging(0.963) TCGA-50-5946-01 21 35821939 35821939 C A KCNE1 5'UTR 0.13 TCGA-50-5946-01 21 37093044 37093044 C A MIR802 RNA 0.23 TCGA-50-5946-01 22 18165977 18165977 C G BCL2L13 Intron 0.17 TCGA-50-5946-01 22 32643456 32643456 C G SLC5A4 Missense_Mutation p.R140P 0.14 deleterious(0) probably_damaging(1) TCGA-50-5946-01 22 35799296 35799296 G T MCM5 Missense_Mutation p.L88F 0.22 deleterious(0.04) benign(0.234) TCGA-50-5946-01 22 36718481 36718481 G A MYH9 Missense_Mutation p.S233F 0.11 probably_damaging(1) TCGA-50-5946-01 22 38119890 38119890 C T TRIOBP Missense_Mutation p.P443S 0.21 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-50-5946-01 22 38122386 38122386 G T TRIOBP Missense_Mutation p.D1275Y 0.44 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-50-5946-01 22 38373947 38373947 C T SOX10 Silent p.K208K 0.37 TCGA-50-5946-01 22 38824011 38824011 T C KCNJ4 Missense_Mutation p.M43V 0.26 deleterious(0) benign(0.105) TCGA-50-5946-01 22 42095615 42095615 G A MEI1 Missense_Mutation p.E25K 0.23 tolerated(0.11) benign(0.003) TCGA-50-5946-01 22 45312286 45312286 C A PHF21B Silent p.A146A 0.27 TCGA-50-5946-01 22 50555689 50555689 G T MOV10L1 Missense_Mutation p.A455S 0.20 deleterious(0.02) benign(0.407) TCGA-50-5946-01 2 113780231 113780231 G T IL36B 3'UTR 0.40 TCGA-50-5946-01 2 125192149 125192149 C A CNTNAP5 Silent p.S206S 0.26 TCGA-50-5946-01 2 125285018 125285018 G A CNTNAP5 Missense_Mutation p.C544Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-50-5946-01 2 127944714 127944714 C T CYP27C1 3'UTR 0.53 TCGA-50-5946-01 2 128029014 128029014 A G ERCC3 Missense_Mutation p.F615L 0.16 tolerated(0.56) benign(0.189) TCGA-50-5946-01 2 141072548 141072548 C T LRP1B Missense_Mutation p.S4254N 0.13 possibly_damaging(0.517) TCGA-50-5946-01 2 141093207 141093207 A T LRP1B Silent p.A4031A 0.26 TCGA-50-5946-01 2 141751644 141751644 C G LRP1B Missense_Mutation p.R855T 0.24 benign(0.036) TCGA-50-5946-01 2 145147171 145147171 C A ZEB2 Missense_Mutation p.E1164D 0.22 tolerated_low_confidence(0.08) probably_damaging(0.967) TCGA-50-5946-01 2 152362721 152362721 C T NEB Missense_Mutation p.E7870K 0.23 probably_damaging(1) TCGA-50-5946-01 2 152483676 152483676 C A NEB Missense_Mutation p.W3396L 0.50 probably_damaging(0.999) TCGA-50-5946-01 2 157406196 157406196 C A GPD2 Nonsense_Mutation p.Y246* 0.19 TCGA-50-5946-01 2 160692136 160692136 C A LY75-CD302 Missense_Mutation p.W1176C 0.25 deleterious(0) probably_damaging(0.99) TCGA-50-5946-01 2 160692137 160692137 C A LY75-CD302 Missense_Mutation p.W1176L 0.22 deleterious(0) probably_damaging(0.954) TCGA-50-5946-01 2 162036134 162036134 T G TANK 5'UTR 0.12 TCGA-50-5946-01 2 167760078 167760078 G T XIRP2 Missense_Mutation p.R29M 0.17 possibly_damaging(0.451) TCGA-50-5946-01 2 167760079 167760079 G T XIRP2 Missense_Mutation p.R29S 0.17 benign(0.034) TCGA-50-5946-01 2 172935698 172935698 T C METAP1D Missense_Mutation p.C202R 0.22 tolerated(0.54) benign(0.001) TCGA-50-5946-01 2 179456346 179456346 A G TTN Missense_Mutation p.I20067T 0.03 TCGA-50-5946-01 2 179477578 179477578 G T TTN Silent p.R16624R 0.28 TCGA-50-5946-01 2 179549432 179549432 G T TTN Missense_Mutation p.P10867T 0.46 TCGA-50-5946-01 2 179574401 179574401 A T TTN Missense_Mutation p.L9549I 0.41 TCGA-50-5946-01 2 179575494 179575494 G T TTN Missense_Mutation p.Q9444K 0.17 TCGA-50-5946-01 2 179580395 179580395 T C TTN Silent p.L8582L 0.36 TCGA-50-5946-01 2 179583676 179583676 G A TTN Missense_Mutation p.P8084L 0.17 TCGA-50-5946-01 2 179637926 179637926 A T TTN Missense_Mutation p.L2589M 0.23 TCGA-50-5946-01 2 189873713 189873713 T A COL3A1 Missense_Mutation p.C1197S 0.43 benign(0.035) TCGA-50-5946-01 2 191840542 191840542 C T STAT1 Missense_Mutation p.E711K 0.29 tolerated(0.48) benign(0.041) TCGA-50-5946-01 2 1926811 1926811 C A MYT1L Missense_Mutation p.G244C 0.16 deleterious_low_confidence(0) benign(0.019) TCGA-50-5946-01 2 208795666 208795666 C G PLEKHM3 Missense_Mutation p.E624Q 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-50-5946-01 2 214354687 214354687 G T SPAG16 Missense_Mutation p.D315Y 0.20 deleterious(0) probably_damaging(0.935) TCGA-50-5946-01 2 215274880 215274880 G T SPAG16 Missense_Mutation p.Q579H 0.24 tolerated(0.09) benign(0.006) TCGA-50-5946-01 2 216960749 216960749 C T TMEM169 Silent p.L21L 0.26 TCGA-50-5946-01 2 220465956 220465956 G T STK11IP Splice_Site p.X32_splice 0.28 TCGA-50-5946-01 2 220501478 220501478 C A SLC4A3 Missense_Mutation p.A833D 0.23 deleterious(0) benign(0.22) TCGA-50-5946-01 2 224463151 224463151 G A SCG2 Missense_Mutation p.R284C 0.58 deleterious(0) probably_damaging(0.999) TCGA-50-5946-01 2 227729706 227729706 G T RHBDD1 Silent p.L99L 0.47 TCGA-50-5946-01 2 242147078 242147078 T A ANO7 Missense_Mutation p.L411Q 0.40 tolerated(0.1) benign(0.439) TCGA-50-5946-01 2 242162664 242162664 C T ANO7 Silent p.I849I 0.22 TCGA-50-5946-01 2 24494747 24494747 T C ITSN2 Silent p.K715K 0.11 TCGA-50-5946-01 2 24985555 24985555 G C NCOA1 Splice_Site p.X1356_splice 0.11 TCGA-50-5946-01 2 27707130 27707130 A T IFT172 Silent p.G100G 0.12 TCGA-50-5946-01 2 27800211 27800211 C A C2orf16 Missense_Mutation p.Q258K 0.14 tolerated(0.15) benign(0.175) TCGA-50-5946-01 2 29404464 29404464 G T CLIP4 Missense_Mutation p.W608L 0.41 tolerated(0.21) probably_damaging(0.991) TCGA-50-5946-01 2 29754815 29754815 C A ALK Nonsense_Mutation p.E374* 0.19 TCGA-50-5946-01 2 30785159 30785159 G A LCLAT1 Splice_Site p.X209_splice 0.42 TCGA-50-5946-01 2 33037582 33037582 C A TTC27 Nonsense_Mutation p.C736* 0.18 TCGA-50-5946-01 2 33589305 33589305 C T LTBP1 Silent p.P1474P 0.36 TCGA-50-5946-01 2 36986195 36986195 T G VIT Intron 0.45 TCGA-50-5946-01 2 48725789 48725789 A T PPP1R21 Missense_Mutation p.Q617L 0.10 tolerated(0.34) benign(0.005) TCGA-50-5946-01 2 55562250 55562250 G A CCDC88A Silent p.S569S 0.16 TCGA-50-5946-01 2 61331052 61331052 C T KIAA1841 Missense_Mutation p.S477F 0.16 deleterious_low_confidence(0.03) benign(0.084) TCGA-50-5946-01 2 70890461 70890461 C G ADD2 3'UTR 0.18 TCGA-50-5946-01 2 70890617 70890617 C G ADD2 Missense_Mutation p.K707N 0.15 tolerated(0.1) unknown(0) TCGA-50-5946-01 2 71766326 71766326 C A DYSF Nonsense_Mutation p.Y511* 0.39 TCGA-50-5946-01 2 71797023 71797023 G A DYSF Missense_Mutation p.G980R 0.11 deleterious(0) probably_damaging(0.982) TCGA-50-5946-01 2 73476217 73476217 C T CCT7 Silent p.P294P 0.22 TCGA-50-5946-01 2 74479355 74479355 C G SLC4A5 Missense_Mutation p.E477Q 0.17 deleterious(0.04) possibly_damaging(0.713) TCGA-50-5946-01 2 74902125 74902125 T C SEMA4F Missense_Mutation p.V371A 0.05 tolerated(0.14) probably_damaging(0.983) TCGA-50-5946-01 2 86378434 86378434 C T IMMT Missense_Mutation p.E463K 0.12 deleterious(0.05) benign(0.217) TCGA-50-5946-01 2 88390543 88390543 G C SMYD1 Missense_Mutation p.G181R 0.17 deleterious(0.01) probably_damaging(0.965) TCGA-50-5946-01 2 88474921 88474921 G T THNSL2 Splice_Site p.X191_splice 0.21 TCGA-50-5946-01 2 88870417 88870417 G T EIF2AK3 Missense_Mutation p.T987N 0.17 deleterious(0) probably_damaging(0.998) TCGA-50-5946-01 2 8891668 8891668 C A KIDINS220 Missense_Mutation p.V1040L 0.11 tolerated(0.54) benign(0.04) TCGA-50-5946-01 2 95942026 95942026 G A PROM2 Missense_Mutation p.M183I 0.46 tolerated(0.33) benign(0.01) TCGA-50-5946-01 2 96047375 96047375 G C KCNIP3 Missense_Mutation p.R160P 0.16 deleterious(0) probably_damaging(1) TCGA-50-5946-01 3 10443872 10443872 G T ATP2B2 Silent p.I186I 0.22 TCGA-50-5946-01 3 107097399 107097401 AAG - CCDC54 In_Frame_Del p.E324del 0.15 TCGA-50-5946-01 3 108672525 108672525 C A GUCA1C Nonsense_Mutation p.E29* 0.36 TCGA-50-5946-01 3 108672526 108672526 C A GUCA1C Missense_Mutation p.M28I 0.36 tolerated(0.18) benign(0.003) TCGA-50-5946-01 3 112260671 112260676 CTTCAT - ATG3 In_Frame_Del p.D150_E151del 0.09 TCGA-50-5946-01 3 113376966 113376966 T A KIAA2018 Missense_Mutation p.Q1188L 0.26 benign(0.05) TCGA-50-5946-01 3 121415674 121415674 C A GOLGB1 Missense_Mutation p.E1232D 0.17 benign(0.17) TCGA-50-5946-01 3 122056441 122056441 G C CSTA Missense_Mutation p.L38F 0.12 tolerated(1) benign(0.001) TCGA-50-5946-01 3 124153322 124153322 C A KALRN Silent p.R998R 0.12 TCGA-50-5946-01 3 126138491 126138491 G C CCDC37 Missense_Mutation p.R248T 0.10 deleterious(0) possibly_damaging(0.752) TCGA-50-5946-01 3 127399219 127399219 C G ABTB1 Missense_Mutation p.H446Q 0.42 deleterious(0) probably_damaging(0.993) TCGA-50-5946-01 3 12977285 12977285 C A IQSEC1 Missense_Mutation p.G425C 0.28 tolerated_low_confidence(0.2) possibly_damaging(0.622) TCGA-50-5946-01 3 133306891 133306891 G A CDV3 3'UTR 0.24 TCGA-50-5946-01 3 134338108 134338108 C G KY Splice_Site p.X198_splice 0.13 TCGA-50-5946-01 3 134851696 134851696 C T EPHB1 Missense_Mutation p.R368W 0.12 deleterious(0.02) possibly_damaging(0.892) TCGA-50-5946-01 3 142051224 142051224 C T XRN1 Silent p.K1404K 0.05 TCGA-50-5946-01 3 156266737 156266737 C T SSR3 Missense_Mutation p.E106K 0.14 tolerated(0.13) benign(0.144) TCGA-50-5946-01 3 156271452 156271452 G C SSR3 Silent p.L84L 0.20 TCGA-50-5946-01 3 157031483 157031483 C A VEPH1 Missense_Mutation p.W646L 0.43 deleterious(0) probably_damaging(0.999) TCGA-50-5946-01 3 15711967 15711967 G C ANKRD28 Missense_Mutation p.P991R 0.31 tolerated(0.1) benign(0.015) TCGA-50-5946-01 3 160783226 160783226 G T PPM1L Missense_Mutation p.D204Y 0.44 deleterious(0.02) benign(0.167) TCGA-50-5946-01 3 160952997 160952997 C T NMD3 Missense_Mutation p.H192Y 0.49 deleterious(0.02) possibly_damaging(0.751) TCGA-50-5946-01 3 165547390 165547390 G T BCHE Missense_Mutation p.L478M 0.45 deleterious(0.04) possibly_damaging(0.83) TCGA-50-5946-01 3 16646782 16646782 G T DAZL 5'Flank 0.37 TCGA-50-5946-01 3 170587954 170587954 C A RPL22L1 Translation_Start_Site p.M1? 0.10 tolerated(0.09) benign(0.01) TCGA-50-5946-01 3 170846593 170846593 G T TNIK Missense_Mutation p.D561E 0.27 tolerated_low_confidence(0.48) probably_damaging(0.914) TCGA-50-5946-01 3 183818191 183818191 C A HTR3E Missense_Mutation p.P11T 0.45 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-50-5946-01 3 184040889 184040889 C T EIF4G1 Missense_Mutation p.R657W 0.49 deleterious(0) probably_damaging(0.982) TCGA-50-5946-01 3 184911232 184911232 C A EHHADH Missense_Mutation p.R318S 0.46 deleterious(0.02) benign(0.095) TCGA-50-5946-01 3 185198315 185198315 G T MAP3K13 Nonsense_Mutation p.E933* 0.30 TCGA-50-5946-01 3 188327046 188327046 A G LPP Missense_Mutation p.K176R 0.47 tolerated(0.34) benign(0.126) TCGA-50-5946-01 3 28454762 28454762 A G ZCWPW2 Missense_Mutation p.Y68C 0.37 deleterious(0.02) probably_damaging(0.975) TCGA-50-5946-01 3 30885886 30885886 C A GADL1 Missense_Mutation p.D242Y 0.36 deleterious(0) probably_damaging(0.995) TCGA-50-5946-01 3 37033770 37033770 C T EPM2AIP1 Missense_Mutation p.A267T 0.41 tolerated(0.26) probably_damaging(0.983) TCGA-50-5946-01 3 38936334 38936334 G A SCN11A Missense_Mutation p.A842V 0.28 deleterious(0.02) benign(0.086) TCGA-50-5946-01 3 40433472 40433472 T A ENTPD3 Intron 0.16 TCGA-50-5946-01 3 41759238 41759238 C A ULK4 Nonsense_Mutation p.E813* 0.41 TCGA-50-5946-01 3 48696795 48696795 T G CELSR3 Silent p.A1091A 0.23 TCGA-50-5946-01 3 49940625 49940625 G A MST1R Nonsense_Mutation p.Q140* 0.26 TCGA-50-5946-01 3 50334355 50334355 C A NAT6 Silent p.V202V 0.12 TCGA-50-5946-01 3 63466619 63466619 G T SYNPR Missense_Mutation p.A66S 0.17 tolerated(0.7) benign(0.041) TCGA-50-5946-01 3 6903136 6903136 C G GRM7 Missense_Mutation p.L21V 0.38 tolerated(0.15) benign(0.007) TCGA-50-5946-01 3 69168981 69168981 G T LMOD3 Silent p.G175G 0.30 TCGA-50-5946-01 3 77607213 77607213 C G ROBO2 Missense_Mutation p.S466R 0.36 tolerated(0.6) possibly_damaging(0.637) TCGA-50-5946-01 3 8579062 8579062 G T LMCD1 Missense_Mutation p.G108V 0.17 tolerated(0.09) probably_damaging(0.966) TCGA-50-5946-01 3 9146467 9146467 C A SRGAP3 Missense_Mutation p.R107L 0.40 deleterious(0) probably_damaging(0.998) TCGA-50-5946-01 4 10445100 10445100 C A ZNF518B Silent p.V951V 0.19 TCGA-50-5946-01 4 114294601 114294601 C T ANK2 Missense_Mutation p.S3952L 0.20 possibly_damaging(0.767) TCGA-50-5946-01 4 114294602 114294602 A C ANK2 Silent p.S3952S 0.20 TCGA-50-5946-01 4 1165693 1165693 A G SPON2 Missense_Mutation p.F56S 0.25 deleterious(0) probably_damaging(0.998) TCGA-50-5946-01 4 120221657 120221657 C T C4orf3 Missense_Mutation p.D145N 0.21 tolerated_low_confidence(0.09) possibly_damaging(0.728) TCGA-50-5946-01 4 124011838 124011838 A T SPATA5 Missense_Mutation p.N773I 0.26 deleterious(0) probably_damaging(1) TCGA-50-5946-01 4 13616302 13616302 T A BOD1L1 Missense_Mutation p.E231V 0.31 probably_damaging(0.999) TCGA-50-5946-01 4 148457076 148457076 T A EDNRA Nonsense_Mutation p.C265* 0.04 TCGA-50-5946-01 4 154217070 154217070 C T TRIM2 Silent p.R464R 0.28 TCGA-50-5946-01 4 155487759 155487759 C G FGB Missense_Mutation p.S142C 0.14 deleterious(0.01) possibly_damaging(0.732) TCGA-50-5946-01 4 156135161 156135161 C A NPY2R Missense_Mutation p.P24T 0.26 tolerated_low_confidence(0.46) benign(0) TCGA-50-5946-01 4 175899201 175899201 C A ADAM29 3'UTR 0.35 TCGA-50-5946-01 4 177017660 177017660 A C WDR17 5'UTR 0.19 TCGA-50-5946-01 4 185941605 185941605 G A HELT Silent p.P221P 0.18 TCGA-50-5946-01 4 20618601 20618601 G T SLIT2 Missense_Mutation p.G1306C 0.20 deleterious(0.01) probably_damaging(1) TCGA-50-5946-01 4 38798776 38798776 C A TLR1 Silent p.P559P 0.23 TCGA-50-5946-01 4 40825658 40825658 C T APBB2 Intron 0.37 TCGA-50-5946-01 4 41956212 41956212 C T TMEM33 Missense_Mutation p.P247L 0.23 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-50-5946-01 4 46737089 46737089 C T COX7B2 Missense_Mutation p.A41T 0.26 tolerated(0.59) benign(0.032) TCGA-50-5946-01 4 47938842 47938842 C A CNGA1 Missense_Mutation p.A626S 0.20 tolerated(0.67) probably_damaging(0.999) TCGA-50-5946-01 4 48636331 48636332 - A FRYL Frame_Shift_Ins p.E33* 0.24 TCGA-50-5946-01 4 49063869 49063869 C A CWH43 Missense_Mutation p.H688N 0.21 deleterious(0) probably_damaging(0.999) TCGA-50-5946-01 4 54232114 54232114 G T SCFD2 5'UTR 0.27 TCGA-50-5946-01 4 5448430 5448430 G C STK32B Missense_Mutation p.R198T 0.19 tolerated(0.37) benign(0.049) TCGA-50-5946-01 4 55153652 55153652 C A PDGFRA Missense_Mutation p.T873N 0.23 deleterious(0) probably_damaging(0.997) TCGA-50-5946-01 4 6864770 6864770 G - KIAA0232 Frame_Shift_Del p.G888Dfs*33 0.25 TCGA-50-5946-01 4 73179393 73179393 C A ADAMTS3 Splice_Site p.X582_splice 0.26 TCGA-50-5946-01 4 74351780 74351780 C A AFM Missense_Mutation p.L158I 0.35 deleterious(0) benign(0.08) TCGA-50-5946-01 4 79516565 79516565 G A ANXA3 Missense_Mutation p.E172K 0.26 tolerated(0.52) benign(0.003) TCGA-50-5946-01 4 83838448 83838448 G A THAP9 Silent p.L361L 0.17 TCGA-50-5946-01 4 90169242 90169242 G A GPRIN3 Nonsense_Mutation p.Q674* 0.27 TCGA-50-5946-01 4 90816385 90816385 C G MMRN1 Missense_Mutation p.T88R 0.15 tolerated_low_confidence(0.08) benign(0.015) TCGA-50-5946-01 5 108698662 108698662 T A PJA2 Missense_Mutation p.S511C 0.18 deleterious(0) probably_damaging(0.999) TCGA-50-5946-01 5 118484770 118484770 G T DMXL1 Missense_Mutation p.C1083F 0.19 deleterious(0) probably_damaging(0.999) TCGA-50-5946-01 5 127623118 127623118 G C FBN2 Missense_Mutation p.I2254M 0.18 tolerated(0.05) possibly_damaging(0.714) TCGA-50-5946-01 5 128324344 128324344 C A SLC27A6 Missense_Mutation p.A246D 0.17 tolerated(0.17) possibly_damaging(0.616) TCGA-50-5946-01 5 128324345 128324345 T G SLC27A6 Silent p.A246A 0.17 TCGA-50-5946-01 5 13793720 13793720 C A DNAH5 Missense_Mutation p.G2710C 0.11 probably_damaging(0.991) TCGA-50-5946-01 5 140076793 140076793 A G HARS2 Silent p.T333T 0.23 TCGA-50-5946-01 5 140182636 140182636 G A PCDHA3 Silent p.A618A 0.24 TCGA-50-5946-01 5 140593731 140593731 G A PCDHB13 Silent p.R12R 0.24 TCGA-50-5946-01 5 140604975 140604975 G A PCDHB14 Missense_Mutation p.R633H 0.28 deleterious_low_confidence(0) benign(0.271) TCGA-50-5946-01 5 140616072 140616072 A G PCDHB18 RNA 0.30 TCGA-50-5946-01 5 140710552 140710552 C A PCDHGA1 Missense_Mutation p.P101T 0.28 deleterious_low_confidence(0.04) benign(0.026) TCGA-50-5946-01 5 140710553 140710553 C A PCDHGA1 Missense_Mutation p.P101Q 0.27 tolerated_low_confidence(0.2) benign(0.026) TCGA-50-5946-01 5 140718825 140718825 G T PCDHGA2 Missense_Mutation p.C96F 0.27 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-50-5946-01 5 140720216 140720216 C A PCDHGA2 Missense_Mutation p.P560T 0.25 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-50-5946-01 5 140725793 140725794 - T PCDHGA3 Frame_Shift_Ins p.L732Ffs*55 0.30 TCGA-50-5946-01 5 148695817 148695817 G T AFAP1L1 Silent p.L406L 0.06 TCGA-50-5946-01 5 149772988 149772988 C A TCOF1 Silent p.A1218A 0.15 TCGA-50-5946-01 5 150042518 150042518 G C MYOZ3 Missense_Mutation p.E5D 0.14 tolerated(0.07) benign(0.134) TCGA-50-5946-01 5 150921897 150921897 G - FAT2 Frame_Shift_Del p.L2931Wfs*101 0.20 TCGA-50-5946-01 5 150946034 150946034 A T FAT2 Missense_Mutation p.F820Y 0.13 probably_damaging(0.999) TCGA-50-5946-01 5 156918897 156918897 C T ADAM19 Silent p.R644R 0.32 TCGA-50-5946-01 5 159344182 159344182 C T ADRA1B Silent p.A90A 0.29 TCGA-50-5946-01 5 160114890 160114890 C G ATP10B Missense_Mutation p.R64S 0.19 tolerated(0.06) benign(0.272) TCGA-50-5946-01 5 16694689 16694689 G A MYO10 Silent p.C1197C 0.11 TCGA-50-5946-01 5 174869683 174869683 G T DRD1 Silent p.A140A 0.29 TCGA-50-5946-01 5 176710798 176710798 T C NSD1 Missense_Mutation p.I2007T 0.15 deleterious(0) probably_damaging(1) TCGA-50-5946-01 5 21752100 21752100 T G CDH12 Missense_Mutation p.T711P 0.16 tolerated(0.24) benign(0.304) TCGA-50-5946-01 5 21854858 21854858 G T CDH12 Missense_Mutation p.P190T 0.11 deleterious(0) possibly_damaging(0.585) TCGA-50-5946-01 5 23526954 23526954 G T PRDM9 Missense_Mutation p.G586V 0.09 deleterious(0.01) probably_damaging(1) TCGA-50-5946-01 5 32724853 32724853 G T NPR3 Silent p.V273V 0.42 TCGA-50-5946-01 5 33588904 33588904 C A ADAMTS12 Missense_Mutation p.G889W 0.20 deleterious(0) probably_damaging(1) TCGA-50-5946-01 5 33989425 33989425 G A AMACR Missense_Mutation p.H308Y 0.26 deleterious(0.03) possibly_damaging(0.708) TCGA-50-5946-01 5 34880305 34880305 C T TTC23L Silent p.F323F 0.11 TCGA-50-5946-01 5 36976485 36976485 A C NIPBL Silent p.S492S 0.04 TCGA-50-5946-01 5 38925400 38925400 C T OSMR Silent p.F713F 0.23 TCGA-50-5946-01 5 39341354 39341354 C T C9 Missense_Mutation p.D124N 0.48 deleterious(0) probably_damaging(1) TCGA-50-5946-01 5 40853382 40853382 G T CARD6 Missense_Mutation p.A650S 0.42 deleterious(0) probably_damaging(0.94) TCGA-50-5946-01 5 41939707 41939707 C T FBXO4 Missense_Mutation p.H355Y 0.09 tolerated(0.05) benign(0.198) TCGA-50-5946-01 5 44812016 44812016 G T MRPS30 Splice_Site p.X250_splice 0.17 TCGA-50-5946-01 5 50090704 50090704 C T PARP8 Missense_Mutation p.P294L 0.35 tolerated_low_confidence(0.66) benign(0.001) TCGA-50-5946-01 5 5461545 5461545 G A KIAA0947 Missense_Mutation p.E700K 0.25 tolerated(0.07) benign(0.081) TCGA-50-5946-01 5 5462876 5462876 G A KIAA0947 Silent p.V1143V 0.17 TCGA-50-5946-01 5 66462216 66462216 G A MAST4 Silent p.A2403A 0.29 TCGA-50-5946-01 5 68805265 68805270 TGGCTA - OCLN In_Frame_Del p.Y128_G129del 0.15 TCGA-50-5946-01 5 7773180 7773180 G A ADCY2 Missense_Mutation p.V784I 0.09 tolerated(0.35) benign(0.001) TCGA-50-5946-01 5 79473874 79473874 C G SERINC5 Missense_Mutation p.E70Q 0.23 tolerated(0.21) benign(0.1) TCGA-50-5946-01 5 89999481 89999481 G A GPR98 Splice_Site p.X2719_splice 0.31 TCGA-50-5946-01 6 106967352 106967352 G T AIM1 Nonsense_Mutation p.E349* 0.14 TCGA-50-5946-01 6 112506471 112506471 G T LAMA4 Missense_Mutation p.L349I 0.38 tolerated(0.13) benign(0.077) TCGA-50-5946-01 6 118556708 118556708 G T SLC35F1 Missense_Mutation p.W129L 0.14 deleterious(0.01) possibly_damaging(0.733) TCGA-50-5946-01 6 12120302 12120302 G C HIVEP1 Missense_Mutation p.E92Q 0.05 deleterious(0.02) possibly_damaging(0.864) TCGA-50-5946-01 6 133836475 133836475 C A EYA4 Silent p.A506A 0.53 TCGA-50-5946-01 6 149395197 149395197 T A UST Missense_Mutation p.I389N 0.41 deleterious_low_confidence(0) possibly_damaging(0.601) TCGA-50-5946-01 6 150111148 150111148 A T PCMT1 Missense_Mutation p.D142V 0.44 deleterious(0) probably_damaging(0.999) TCGA-50-5946-01 6 159653296 159653296 G T FNDC1 Silent p.V584V 0.27 TCGA-50-5946-01 6 160494911 160494911 C G IGF2R Missense_Mutation p.F1690L 0.18 deleterious(0.05) possibly_damaging(0.743) TCGA-50-5946-01 6 16145328 16145328 A G MYLIP Missense_Mutation p.N343S 0.10 tolerated(0.62) benign(0.001) TCGA-50-5946-01 6 18225879 18225879 C G DEK 3'UTR 0.13 TCGA-50-5946-01 6 26031997 26031997 C T HIST1H3B Missense_Mutation p.E98K 0.12 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-50-5946-01 6 26045678 26045678 G A HIST1H3C Missense_Mutation p.G14S 0.13 deleterious_low_confidence(0.01) benign(0) TCGA-50-5946-01 6 26252185 26252185 C G HIST1H2BH Missense_Mutation p.L103V 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.818) TCGA-50-5946-01 6 27368461 27368461 A T ZNF391 Silent p.S104S 0.12 TCGA-50-5946-01 6 27860954 27860954 G A HIST1H2AM 5'UTR 0.19 TCGA-50-5946-01 6 29054991 29054991 A G OR2B3 Missense_Mutation p.F12S 0.24 deleterious(0) probably_damaging(0.999) TCGA-50-5946-01 6 29797338 29797338 G T HLA-G Missense_Mutation p.V255L 0.34 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-50-5946-01 6 30647008 30647008 C A PPP1R18 Silent p.L590L 0.19 TCGA-50-5946-01 6 33409481 33409481 G A SYNGAP1 Missense_Mutation p.V747I 0.14 tolerated(0.46) benign(0.01) TCGA-50-5946-01 6 35387970 35387970 C T PPARD Missense_Mutation p.S66L 0.25 deleterious(0.03) benign(0.05) TCGA-50-5946-01 6 38795996 38795996 G T DNAH8 Missense_Mutation p.V1157L 0.10 benign(0.008) TCGA-50-5946-01 6 40360376 40360387 ACCTTGTAGCGC - LRFN2 In_Frame_Del p.R556_V559del 0.16 TCGA-50-5946-01 6 42036223 42036223 A C TAF8 Missense_Mutation p.T220P 0.34 tolerated(0.24) benign(0.001) TCGA-50-5946-01 6 43096737 43096737 C A PTK7 Missense_Mutation p.F42L 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-50-5946-01 6 46777206 46777206 C T MEP1A Silent p.L104L 0.19 TCGA-50-5946-01 6 47649631 47649631 C A GPR111 Missense_Mutation p.L446M 0.12 deleterious(0) probably_damaging(1) TCGA-50-5946-01 6 48036173 48036173 C T PTCHD4 Silent p.L73L 0.13 TCGA-50-5946-01 6 50803985 50803985 C T TFAP2B Silent p.V271V 0.18 TCGA-50-5946-01 6 55145194 55145194 G T HCRTR2 Missense_Mutation p.V353L 0.35 tolerated(0.1) benign(0.06) TCGA-50-5946-01 6 56417415 56417415 C G DST Missense_Mutation p.R2769P 0.24 probably_damaging(1) TCGA-50-5946-01 6 62611152 62611152 G A KHDRBS2 Missense_Mutation p.S203L 0.23 tolerated(0.3) benign(0.057) TCGA-50-5946-01 6 66112479 66112479 G T EYS Nonsense_Mutation p.S359* 0.34 TCGA-50-5946-01 6 70909316 70909316 G A COL19A1 Silent p.R1033R 0.21 TCGA-50-5946-01 6 70980049 70980049 G T COL9A1 Missense_Mutation p.P389T 0.15 probably_damaging(0.96) TCGA-50-5946-01 6 7231533 7231533 C T RREB1 Silent p.S1067S 0.09 TCGA-50-5946-01 6 73713683 73713683 G C KCNQ5 Missense_Mutation p.E151Q 0.16 deleterious(0.02) benign(0.032) TCGA-50-5946-01 6 76623840 76623840 A T MYO6 Missense_Mutation p.Q1167L 0.54 tolerated(0.06) possibly_damaging(0.837) TCGA-50-5946-01 6 83602693 83602693 C G UBE3D 3'UTR 0.51 TCGA-50-5946-01 6 83839224 83839224 A G DOPEY1 Missense_Mutation p.T780A 0.45 tolerated(0.76) benign(0) TCGA-50-5946-01 6 87964395 87964395 A G ZNF292 Missense_Mutation p.I350V 0.37 tolerated(0.34) possibly_damaging(0.562) TCGA-50-5946-01 6 88224178 88224178 C A RARS2 Missense_Mutation p.A564S 0.20 tolerated(0.16) possibly_damaging(0.856) TCGA-50-5946-01 6 89864535 89864535 C T PM20D2 Missense_Mutation p.R276C 0.20 deleterious(0) probably_damaging(1) TCGA-50-5946-01 6 91226097 91226097 T C MAP3K7 3'UTR 0.33 TCGA-50-5946-01 6 99283695 99283695 C A POU3F2 Missense_Mutation p.L316M 0.42 deleterious(0) probably_damaging(1) TCGA-50-5946-01 6 99283696 99283696 T A POU3F2 Missense_Mutation p.L316Q 0.42 deleterious(0) probably_damaging(1) TCGA-50-5946-01 7 100675086 100675086 C A MUC17 Missense_Mutation p.P130H 0.17 benign(0.044) TCGA-50-5946-01 7 100839126 100839126 G T MOGAT3 3'UTR 0.41 TCGA-50-5946-01 7 102760347 102760347 C T NAPEPLD Silent p.E206E 0.41 TCGA-50-5946-01 7 104717791 104717791 A T KMT2E Missense_Mutation p.K347N 0.08 deleterious(0.01) possibly_damaging(0.728) TCGA-50-5946-01 7 105904020 105904020 C T NAMPT Missense_Mutation p.E263K 0.13 tolerated(0.32) benign(0.007) TCGA-50-5946-01 7 106508850 106508850 G C PIK3CG Missense_Mutation p.V282L 0.44 tolerated(0.64) benign(0.063) TCGA-50-5946-01 7 110763422 110763422 T C LRRN3 Silent p.N198N 0.19 TCGA-50-5946-01 7 110763423 110763423 C A LRRN3 Missense_Mutation p.P199T 0.19 deleterious(0.03) probably_damaging(1) TCGA-50-5946-01 7 112102373 112102373 G A IFRD1 Missense_Mutation p.M282I 0.14 deleterious(0.02) benign(0.159) TCGA-50-5946-01 7 112724005 112724005 C A GPR85 Missense_Mutation p.G258C 0.28 deleterious(0) probably_damaging(0.997) TCGA-50-5946-01 7 11485769 11485769 C G THSD7A Missense_Mutation p.G995R 0.19 deleterious(0) probably_damaging(1) TCGA-50-5946-01 7 11675948 11675948 G T THSD7A Silent p.R277R 0.16 TCGA-50-5946-01 7 121650666 121650667 TG - PTPRZ1 Frame_Shift_Del p.V523Dfs*2 0.21 TCGA-50-5946-01 7 122338253 122338253 T A RNF133 Silent p.R240R 0.22 TCGA-50-5946-01 7 127231382 127231382 G C ARF5 3'UTR 0.21 TCGA-50-5946-01 7 1273220 1273220 C T UNCX Silent p.T113T 0.14 TCGA-50-5946-01 7 131194301 131194301 C G PODXL Missense_Mutation p.Q282H 0.14 deleterious(0.05) possibly_damaging(0.647) TCGA-50-5946-01 7 134260294 134260294 G T AKR1B15 Missense_Mutation p.Q212H 0.12 deleterious(0) probably_damaging(0.999) TCGA-50-5946-01 7 134625922 134625922 C A CALD1 Missense_Mutation p.T489K 0.17 tolerated(0.05) unknown(0) TCGA-50-5946-01 7 139661740 139661740 T C TBXAS1 Missense_Mutation p.M328T 0.15 deleterious(0) benign(0.3) TCGA-50-5946-01 7 140481402 140481402 C A BRAF Missense_Mutation p.G469V 0.40 deleterious(0) probably_damaging(0.998) TCGA-50-5946-01 7 141539164 141539164 C A PRSS37 Silent p.V50V 0.23 TCGA-50-5946-01 7 141957510 141957510 G A PRSS58 Silent p.L6L 0.13 TCGA-50-5946-01 7 142104553 142104553 T C TRBV6-9 Translation_Start_Site p.M1? 0.46 deleterious(0.02) possibly_damaging(0.863) TCGA-50-5946-01 7 142168566 142168566 A T TRBV5-4 Missense_Mutation p.W53R 0.14 deleterious(0.01) probably_damaging(0.952) TCGA-50-5946-01 7 142197829 142197829 T C TRBV11-2 RNA 0.16 TCGA-50-5946-01 7 142836633 142836633 C G PIP Silent p.V113V 0.47 TCGA-50-5946-01 7 144098309 144098309 G T NOBOX Nonsense_Mutation p.S225* 0.36 TCGA-50-5946-01 7 148768940 148768940 C A ZNF786 Silent p.V308V 0.21 TCGA-50-5946-01 7 150500783 150500783 T A TMEM176A Missense_Mutation p.F140I 0.26 deleterious(0.01) possibly_damaging(0.828) TCGA-50-5946-01 7 150738265 150738265 G T ABCB8 Silent p.L521L 0.22 TCGA-50-5946-01 7 150738266 150738266 C T ABCB8 Missense_Mutation p.R522C 0.24 deleterious(0.02) benign(0.238) TCGA-50-5946-01 7 1512766 1512766 C T INTS1 Silent p.G2004G 0.10 TCGA-50-5946-01 7 152007149 152007149 C A KMT2C Missense_Mutation p.A251S 0.18 possibly_damaging(0.744) TCGA-50-5946-01 7 155301615 155301615 C A CNPY1 Missense_Mutation p.D40Y 0.13 deleterious(0) probably_damaging(0.986) TCGA-50-5946-01 7 16816732 16816732 G T TSPAN13 Silent p.L99L 0.11 TCGA-50-5946-01 7 18687408 18687408 G C HDAC9 Missense_Mutation p.A346P 0.20 tolerated(0.1) possibly_damaging(0.773) TCGA-50-5946-01 7 18706012 18706012 G C HDAC9 Silent p.V548V 0.20 TCGA-50-5946-01 7 20668361 20668361 G T ABCB5 Silent p.L53L 0.23 TCGA-50-5946-01 7 20698191 20698191 C A ABCB5 Silent p.I533I 0.55 TCGA-50-5946-01 7 22162065 22162065 C A RAPGEF5 Missense_Mutation p.A718S 0.10 deleterious(0.04) benign(0.075) TCGA-50-5946-01 7 23307523 23307523 A G GPNMB Missense_Mutation p.N391S 0.13 tolerated(0.16) benign(0.056) TCGA-50-5946-01 7 24329163 24329163 G T NPY Missense_Mutation p.L78F 0.10 tolerated(0.07) benign(0.024) TCGA-50-5946-01 7 27204733 27204733 G C HOXA9 Missense_Mutation p.T115R 0.21 deleterious(0.01) benign(0.006) TCGA-50-5946-01 7 30329438 30329438 G C ZNRF2 Intron 0.15 TCGA-50-5946-01 7 31735207 31735207 G T PPP1R17 Silent p.P69P 0.11 TCGA-50-5946-01 7 33134963 33134963 C T RP9 Silent p.E183E 0.12 TCGA-50-5946-01 7 37780914 37780914 C A GPR141 3'UTR 0.34 TCGA-50-5946-01 7 42064874 42064874 G A GLI3 Missense_Mutation p.R449W 0.14 deleterious(0.04) possibly_damaging(0.884) TCGA-50-5946-01 7 42949986 42949987 TG - C7orf25 Frame_Shift_Del p.N229Kfs*32 0.08 TCGA-50-5946-01 7 48045605 48045605 C T SUN3 Missense_Mutation p.D180N 0.18 deleterious(0.02) probably_damaging(0.972) TCGA-50-5946-01 7 50367289 50367289 G T IKZF1 Silent p.P32P 0.08 TCGA-50-5946-01 7 50450313 50450313 T A IKZF1 Missense_Mutation p.L166Q 0.19 deleterious(0) probably_damaging(1) TCGA-50-5946-01 7 53103526 53103526 C A POM121L12 Silent p.P54P 0.44 TCGA-50-5946-01 7 55459528 55459528 G C LANCL2 Missense_Mutation p.D83H 0.17 deleterious(0.01) probably_damaging(0.987) TCGA-50-5946-01 7 62753198 62753198 G C ZNF733P RNA 0.31 TCGA-50-5946-01 7 62758704 62758704 C T ZNF733P RNA 0.18 TCGA-50-5946-01 7 79082556 79082556 C A MAGI2 Missense_Mutation p.Q27H 0.37 deleterious(0) possibly_damaging(0.615) TCGA-50-5946-01 7 794431 794431 C T HEATR2 Silent p.T410T 0.07 TCGA-50-5946-01 7 96746943 96746943 C A ACN9 5'UTR 0.18 TCGA-50-5946-01 8 105456599 105456599 C A DPYS Missense_Mutation p.A224S 0.55 deleterious(0.02) benign(0.217) TCGA-50-5946-01 8 109797065 109797065 G C TMEM74 Nonsense_Mutation p.S88* 0.29 TCGA-50-5946-01 8 114326847 114326847 G T CSMD3 Nonsense_Mutation p.Y118* 0.57 TCGA-50-5946-01 8 124693372 124693372 C - ANXA13 3'UTR 0.27 TCGA-50-5946-01 8 14181665 14181665 C A SGCZ Missense_Mutation p.G95C 0.48 deleterious(0) probably_damaging(1) TCGA-50-5946-01 8 145246731 145246731 G T MROH1 Missense_Mutation p.K276N 0.07 deleterious(0) probably_damaging(0.963) TCGA-50-5946-01 8 17137787 17137787 G C VPS37A Missense_Mutation p.R294T 0.18 deleterious(0) possibly_damaging(0.9) TCGA-50-5946-01 8 17933090 17933090 C G ASAH1 Missense_Mutation p.E45Q 0.28 tolerated(0.07) probably_damaging(0.918) TCGA-50-5946-01 8 21986339 21986339 G C HR Missense_Mutation p.C115W 0.36 deleterious_low_confidence(0) possibly_damaging(0.808) TCGA-50-5946-01 8 2818702 2818702 C A CSMD1 Silent p.T3221T 0.41 TCGA-50-5946-01 8 28309952 28309952 T C FBXO16 Silent p.L183L 0.68 TCGA-50-5946-01 8 2886840 2886840 C A CSMD1 Splice_Site p.X2619_splice 0.15 TCGA-50-5946-01 8 3245095 3245095 C A CSMD1 Silent p.P901P 0.44 TCGA-50-5946-01 8 32621578 32621578 G T NRG1 Silent p.T532T 0.19 TCGA-50-5946-01 8 42036487 42036487 G C PLAT Silent p.V486V 0.25 TCGA-50-5946-01 8 52469440 52469440 C A PXDNL Missense_Mutation p.D114Y 0.36 deleterious(0.01) probably_damaging(0.972) TCGA-50-5946-01 8 6302891 6302891 G C MCPH1 Missense_Mutation p.E550Q 0.26 tolerated(0.46) benign(0.034) TCGA-50-5946-01 8 67786332 67786332 C G MCMDC2 5'UTR 0.29 TCGA-50-5946-01 8 71082499 71082499 T C NCOA2 Missense_Mutation p.Y160C 0.50 deleterious(0.01) probably_damaging(1) TCGA-50-5946-01 8 72984040 72984040 T A TRPA1 Missense_Mutation p.R58S 0.59 tolerated(0.16) benign(0.014) TCGA-50-5946-01 8 73480471 73480471 G C KCNB2 Missense_Mutation p.D168H 0.32 deleterious(0.01) probably_damaging(0.912) TCGA-50-5946-01 8 80950450 80950451 CT A TPD52 Frame_Shift_Del p.K192Ifs*11 0.19 TCGA-50-5946-01 9 107266860 107266860 C A OR13F1 Missense_Mutation p.A106D 0.31 deleterious(0) possibly_damaging(0.646) TCGA-50-5946-01 9 107266861 107266861 C T OR13F1 Silent p.A106A 0.30 TCGA-50-5946-01 9 113170561 113170561 C T SVEP1 Missense_Mutation p.C2440Y 0.28 probably_damaging(1) TCGA-50-5946-01 9 113734429 113734429 C A LPAR1 5'UTR 0.21 TCGA-50-5946-01 9 120476816 120476816 C G TLR4 Missense_Mutation p.R804G 0.10 deleterious(0) possibly_damaging(0.907) TCGA-50-5946-01 9 121929281 121929281 G T BRINP1 3'UTR 0.19 TCGA-50-5946-01 9 125797433 125797433 G A GPR21 Silent p.V196V 0.23 TCGA-50-5946-01 9 127916001 127916001 C G PPP6C Missense_Mutation p.L197F 0.06 tolerated(0.73) benign(0.278) TCGA-50-5946-01 9 131036192 131036192 C G GOLGA2 Missense_Mutation p.K48N 0.44 deleterious(0.01) possibly_damaging(0.802) TCGA-50-5946-01 9 135698592 135698592 C A AK8 Missense_Mutation p.V297F 0.36 deleterious(0.01) probably_damaging(0.938) TCGA-50-5946-01 9 135866528 135866528 G T GFI1B 3'UTR 0.33 TCGA-50-5946-01 9 139228913 139228913 G A GPSM1 Silent p.A26A 0.32 TCGA-50-5946-01 9 140100186 140100186 C T NDOR1 5'UTR 0.19 TCGA-50-5946-01 9 14851530 14851531 CG A FREM1 Frame_Shift_Del p.V302Cfs*11 0.26 TCGA-50-5946-01 9 18706887 18706887 G T ADAMTSL1 Missense_Mutation p.A573S 0.31 tolerated(0.31) benign(0.133) TCGA-50-5946-01 9 20715360 20715360 A G FOCAD Missense_Mutation p.D3G 0.31 deleterious(0.01) possibly_damaging(0.628) TCGA-50-5946-01 9 21441175 21441175 A G IFNA1 3'UTR 0.36 TCGA-50-5946-01 9 33462769 33462769 C A NOL6 Nonsense_Mutation p.E1112* 0.31 TCGA-50-5946-01 9 34627763 34627763 G T ARID3C Silent p.P83P 0.15 TCGA-50-5946-01 9 39888085 39888085 A T SPATA31A2 Nonsense_Mutation p.K358* 0.19 TCGA-50-5946-01 9 73442778 73442778 G T TRPM3 Missense_Mutation p.Q320K 0.10 deleterious(0.01) probably_damaging(0.985) TCGA-50-5946-01 9 75773315 75773315 A C ANXA1 5'UTR 0.23 TCGA-50-5946-01 9 79322883 79322883 C A PRUNE2 Missense_Mutation p.S1436I 0.13 tolerated(0.22) benign(0.038) TCGA-50-5946-01 9 87339228 87339228 T C NTRK2 Silent p.N270N 0.21 TCGA-50-5946-01 9 91150523 91150523 G A NXNL2 Silent p.E58E 0.31 TCGA-50-5946-01 9 91994056 91994056 G A SEMA4D Missense_Mutation p.P718S 0.27 tolerated(0.06) benign(0.191) TCGA-50-5946-01 9 93650066 93650066 C T SYK Silent p.Y539Y 0.27 TCGA-50-5946-01 9 94877644 94877644 G A SPTLC1 Silent p.T3T 0.25 TCGA-50-5946-01 X 100808046 100808046 A G ARMCX1 Missense_Mutation p.T45A 0.19 tolerated_low_confidence(0.47) benign(0) TCGA-50-5946-01 X 101092807 101092807 T C NXF5 Missense_Mutation p.N289S 0.36 tolerated(1) benign(0) TCGA-50-5946-01 X 101817581 101817581 G A NXF4 RNA 0.53 TCGA-50-5946-01 X 102564741 102564741 C T BEX2 Missense_Mutation p.R87Q 0.23 tolerated(0.26) benign(0.084) TCGA-50-5946-01 X 102864516 102864516 C A TCEAL3 Missense_Mutation p.P175Q 0.09 deleterious(0.02) possibly_damaging(0.788) TCGA-50-5946-01 X 107414123 107414123 A T COL4A6 Missense_Mutation p.I1102K 0.27 benign(0.089) TCGA-50-5946-01 X 125686586 125686586 G C DCAF12L1 Silent p.A2A 0.24 TCGA-50-5946-01 X 134481224 134481224 C T ZNF449 Missense_Mutation p.P61S 0.07 deleterious(0) probably_damaging(0.999) TCGA-50-5946-01 X 134494660 134494675 ACATATAAATGTCTTG - ZNF449 Frame_Shift_Del p.T406Sfs*16 0.27 TCGA-50-5946-01 X 134495105 134495105 A G ZNF449 3'UTR 0.66 TCGA-50-5946-01 X 136113088 136113088 C T GPR101 Missense_Mutation p.G249E 0.23 tolerated(0.51) benign(0.019) TCGA-50-5946-01 X 140994802 140994802 G T MAGEC1 Nonsense_Mutation p.E538* 0.30 TCGA-50-5946-01 X 141291382 141291382 G T MAGEC2 Missense_Mutation p.P131Q 0.59 tolerated(0.08) benign(0.347) TCGA-50-5946-01 X 141291383 141291383 G T MAGEC2 Missense_Mutation p.P131T 0.59 tolerated(0.5) benign(0.025) TCGA-50-5946-01 X 142596896 142596897 CC T SPANXN3 Frame_Shift_Del p.R58Kfs*6 0.34 TCGA-50-5946-01 X 151092251 151092251 G T MAGEA4 Missense_Mutation p.A39S 0.77 tolerated(0.61) benign(0.014) TCGA-50-5946-01 X 153137718 153137718 T C L1CAM Missense_Mutation p.I97V 0.30 tolerated(0.17) possibly_damaging(0.524) TCGA-50-5946-01 X 153227707 153227707 G A HCFC1 Missense_Mutation p.R255C 0.22 deleterious(0) probably_damaging(0.998) TCGA-50-5946-01 X 153996912 153996912 C G DKC1 Intron 0.32 TCGA-50-5946-01 X 154182272 154182272 C A F8 Nonsense_Mutation p.E600* 0.24 TCGA-50-5946-01 X 1584585 1584585 G A P2RY8 Silent p.D289D 0.28 TCGA-50-5946-01 X 21444638 21444638 T C CNKSR2 Missense_Mutation p.Y30H 0.54 deleterious(0) possibly_damaging(0.499) TCGA-50-5946-01 X 30260505 30260505 G T MAGEB4 Nonsense_Mutation p.E85* 0.33 TCGA-50-5946-01 X 35993865 35993865 G C CXorf22 Missense_Mutation p.E850Q 0.08 tolerated(0.09) possibly_damaging(0.723) TCGA-50-5946-01 X 36091256 36091256 G T CHDC2 Missense_Mutation p.G64V 0.50 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-50-5946-01 X 56590789 56590789 G T UBQLN2 Silent p.S161S 0.43 TCGA-50-5946-01 X 57021110 57021110 C A SPIN3 Missense_Mutation p.D91Y 0.41 deleterious(0) probably_damaging(1) TCGA-50-5946-01 X 69502704 69502704 T G RAB41 Missense_Mutation p.I78R 0.57 deleterious(0) possibly_damaging(0.598) TCGA-50-5946-01 X 76854925 76854925 C A ATRX Missense_Mutation p.D1971Y 0.64 possibly_damaging(0.781) TCGA-50-5946-01 X 78426917 78426917 G T GPR174 Missense_Mutation p.S138I 0.28 deleterious(0) possibly_damaging(0.609) TCGA-50-5946-01 X 79286250 79286250 G T TBX22 Missense_Mutation p.Q401H 0.30 tolerated(0.34) benign(0.004) TCGA-50-5946-01 X 86880730 86880730 C A KLHL4 Silent p.R420R 0.41 TCGA-50-5946-01 X 8998402 8998402 C A FAM9B Splice_Site p.X61_splice 0.55 TCGA-50-6590-01 10 102896655 102896655 G T TLX1 Silent p.A326A 0.24 TCGA-50-6590-01 10 105209385 105209385 G C CALHM2 Missense_Mutation p.S105C 0.26 deleterious(0) probably_damaging(0.989) TCGA-50-6590-01 10 106139943 106139943 C A CCDC147 Silent p.R444R 0.24 TCGA-50-6590-01 10 106209931 106209931 C A CCDC147 Missense_Mutation p.L827I 0.21 deleterious(0.03) possibly_damaging(0.452) TCGA-50-6590-01 10 107012559 107012559 C A SORCS3 Silent p.I1044I 0.23 TCGA-50-6590-01 10 108412274 108412274 C A SORCS1 Missense_Mutation p.V781L 0.17 tolerated(0.4) benign(0.025) TCGA-50-6590-01 10 108458987 108458987 C A SORCS1 Missense_Mutation p.M466I 0.19 tolerated(0.6) benign(0.009) TCGA-50-6590-01 10 111885621 111885621 G A ADD3 Missense_Mutation p.G480E 0.09 deleterious(0) probably_damaging(0.963) TCGA-50-6590-01 10 115982366 115982366 A C TDRD1 Missense_Mutation p.M971L 0.05 tolerated(0.31) benign(0) TCGA-50-6590-01 10 117045739 117045739 A G ATRNL1 Silent p.G749G 0.13 TCGA-50-6590-01 10 124097609 124097609 A T BTBD16 3'UTR 0.11 TCGA-50-6590-01 10 126205795 126205795 A T LHPP Missense_Mutation p.Q224L 0.22 deleterious(0.04) possibly_damaging(0.843) TCGA-50-6590-01 10 127693550 127693550 G A FANK1 Missense_Mutation p.A213T 0.17 deleterious(0.04) probably_damaging(0.917) TCGA-50-6590-01 10 128147624 128147624 G T C10orf90 Missense_Mutation p.P628T 0.18 deleterious(0) probably_damaging(1) TCGA-50-6590-01 10 13166046 13166046 G A OPTN Missense_Mutation p.E312K 0.17 deleterious(0) probably_damaging(0.91) TCGA-50-6590-01 10 134165200 134165200 G A LRRC27 Missense_Mutation p.R339Q 0.07 deleterious(0.01) possibly_damaging(0.885) TCGA-50-6590-01 10 135027556 135027556 A T KNDC1 Missense_Mutation p.Q1536L 0.09 deleterious(0) probably_damaging(0.952) TCGA-50-6590-01 10 135233637 135233637 C T MTG1 Missense_Mutation p.R325W 0.18 deleterious_low_confidence(0.03) benign(0.003) TCGA-50-6590-01 10 17363209 17363209 C A ST8SIA6 Nonsense_Mutation p.E289* 0.09 TCGA-50-6590-01 10 17702489 17702489 G C STAM Missense_Mutation p.A23P 0.07 deleterious(0.01) possibly_damaging(0.685) TCGA-50-6590-01 10 17949691 17949691 G T MRC1L1 Missense_Mutation p.G1352V 0.14 probably_damaging(0.995) TCGA-50-6590-01 10 20290747 20290747 G T PLXDC2 Missense_Mutation p.E52D 0.21 tolerated_low_confidence(0.32) benign(0.003) TCGA-50-6590-01 10 20290762 20290762 T A PLXDC2 Missense_Mutation p.D57E 0.11 tolerated_low_confidence(0.14) benign(0.05) TCGA-50-6590-01 10 25861626 25861626 G T GPR158 Missense_Mutation p.M521I 0.15 deleterious(0) benign(0.262) TCGA-50-6590-01 10 27112235 27112235 C T ABI1 Splice_Site p.X40_splice 0.11 TCGA-50-6590-01 10 28971061 28971061 G T BAMBI Missense_Mutation p.A172S 0.12 deleterious(0) probably_damaging(0.998) TCGA-50-6590-01 10 43292122 43292122 A G BMS1 Missense_Mutation p.Y477C 0.09 tolerated(0.17) benign(0.003) TCGA-50-6590-01 10 48426633 48426633 C G GDF10 Missense_Mutation p.E458D 0.21 tolerated(0.1) probably_damaging(0.917) TCGA-50-6590-01 10 55568489 55568489 G T PCDH15 Missense_Mutation p.P708Q 0.17 tolerated_low_confidence(0.08) unknown(0) TCGA-50-6590-01 10 55569054 55569054 G C PCDH15 Missense_Mutation p.L520V 0.09 deleterious_low_confidence(0) unknown(0) TCGA-50-6590-01 10 55582436 55582436 T G PCDH15 Missense_Mutation p.K1686Q 0.20 tolerated_low_confidence(0.14) benign(0.004) TCGA-50-6590-01 10 59956169 59956169 C T IPMK Missense_Mutation p.E307K 0.07 tolerated(0.34) benign(0.16) TCGA-50-6590-01 10 6104125 6104126 - T IL2RA 5'UTR 0.15 TCGA-50-6590-01 10 63519868 63519868 G A C10orf107 Missense_Mutation p.E114K 0.07 deleterious(0) benign(0.403) TCGA-50-6590-01 10 64967837 64967837 G T JMJD1C Missense_Mutation p.R1198S 0.13 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 10 70733333 70733333 G T DDX21 Silent p.R527R 0.08 TCGA-50-6590-01 10 71075622 71075622 C A HK1 Intron 0.13 TCGA-50-6590-01 10 74714370 74714370 G T PLA2G12B Missense_Mutation p.P25H 0.21 deleterious(0.01) possibly_damaging(0.617) TCGA-50-6590-01 10 7618544 7618544 G T ITIH5 Missense_Mutation p.P617H 0.22 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 10 84118523 84118523 C T NRG3 Silent p.S284S 0.09 TCGA-50-6590-01 10 89118103 89118103 G C NUTM2D Silent p.L27L 0.10 TCGA-50-6590-01 10 89473906 89473906 C A PAPSS2 Missense_Mutation p.L163I 0.18 deleterious(0.01) possibly_damaging(0.839) TCGA-50-6590-01 10 91497359 91497359 C G KIF20B Missense_Mutation p.L881V 0.12 tolerated(0.74) benign(0.075) TCGA-50-6590-01 10 94264609 94264609 C T IDE Missense_Mutation p.E458K 0.22 deleterious(0.03) benign(0.285) TCGA-50-6590-01 10 97096425 97096425 C G SORBS1 Missense_Mutation p.Q1164H 0.10 tolerated_low_confidence(0.06) benign(0.05) TCGA-50-6590-01 11 102573508 102573508 C T MMP27 Missense_Mutation p.E199K 0.13 deleterious(0.01) probably_damaging(1) TCGA-50-6590-01 11 102666207 102666207 T A MMP1 Missense_Mutation p.I253F 0.15 deleterious(0) probably_damaging(0.979) TCGA-50-6590-01 11 1029498 1029498 G T MUC6 Missense_Mutation p.T378N 0.26 unknown(0) TCGA-50-6590-01 11 104871020 104871020 G C CASP5 Missense_Mutation p.P320R 0.04 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 11 104872862 104872862 C G CASP5 Missense_Mutation p.D217H 0.15 deleterious(0) possibly_damaging(0.663) TCGA-50-6590-01 11 105836774 105836774 G A GRIA4 Intron 0.14 TCGA-50-6590-01 11 106680949 106680949 T A GUCY1A2 Nonsense_Mutation p.K488* 0.10 TCGA-50-6590-01 11 106810821 106810821 C A GUCY1A2 Missense_Mutation p.A191S 0.11 tolerated(0.11) benign(0.237) TCGA-50-6590-01 11 107501444 107501444 C G ELMOD1 Missense_Mutation p.S61C 0.28 deleterious(0) probably_damaging(0.998) TCGA-50-6590-01 11 111622952 111622952 C A PPP2R1B Silent p.L423L 0.23 TCGA-50-6590-01 11 113661354 113661354 G A ATF4P4 RNA 0.14 TCGA-50-6590-01 11 113860292 113860292 T G HTR3A Missense_Mutation p.V453G 0.08 deleterious(0) possibly_damaging(0.586) TCGA-50-6590-01 11 118209937 118209937 G A CD3D Silent p.L152L 0.15 TCGA-50-6590-01 11 118965693 118965693 G T H2AFX Missense_Mutation p.Q138K 0.15 tolerated_low_confidence(0.86) benign(0) TCGA-50-6590-01 11 122720873 122720873 C A CRTAM Silent p.L48L 0.20 TCGA-50-6590-01 11 122720874 122720874 C A CRTAM Missense_Mutation p.Q49K 0.20 deleterious(0) probably_damaging(1) TCGA-50-6590-01 11 123894622 123894622 G T OR10G9 Silent p.L301L 0.13 TCGA-50-6590-01 11 123909167 123909167 G T OR10G7 Missense_Mutation p.P181Q 0.16 deleterious(0.02) probably_damaging(0.996) TCGA-50-6590-01 11 124120729 124120729 T A OR8G1 Missense_Mutation p.F103I 0.10 deleterious_low_confidence(0.01) benign(0.444) TCGA-50-6590-01 11 124120789 124120789 T A OR8G1 Missense_Mutation p.Y123N 0.25 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-50-6590-01 11 124763628 124763628 T C ROBO4 Splice_Site p.X502_splice 0.18 TCGA-50-6590-01 11 125484098 125484098 G T STT3A Missense_Mutation p.Q557H 0.22 deleterious(0) probably_damaging(0.951) TCGA-50-6590-01 11 126141434 126141434 A T FOXRED1 Missense_Mutation p.H63L 0.14 tolerated(0.13) benign(0.288) TCGA-50-6590-01 11 14515881 14515881 C G COPB1 Missense_Mutation p.V66L 0.10 deleterious(0.04) benign(0.074) TCGA-50-6590-01 11 16824580 16824580 C A PLEKHA7 Missense_Mutation p.C699F 0.10 deleterious(0) probably_damaging(0.985) TCGA-50-6590-01 11 17434996 17434996 A T ABCC8 Missense_Mutation p.L807Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 11 18610241 18610241 C G UEVLD 5'Flank 0.33 TCGA-50-6590-01 11 19251862 19251862 C T E2F8 Silent p.Q428Q 0.16 TCGA-50-6590-01 11 20486092 20486092 G T PRMT3 Silent p.T449T 0.25 TCGA-50-6590-01 11 22242707 22242707 T C ANO5 Missense_Mutation p.F82S 0.26 deleterious(0) possibly_damaging(0.851) TCGA-50-6590-01 11 27371933 27371933 T C CCDC34 Silent p.R184R 0.23 TCGA-50-6590-01 11 33564580 33564580 C A KIAA1549L Missense_Mutation p.P194T 0.20 deleterious_low_confidence(0.01) benign(0.115) TCGA-50-6590-01 11 40137814 40137814 T A LRRC4C Missense_Mutation p.Q10L 0.14 tolerated_low_confidence(0.14) benign(0) TCGA-50-6590-01 11 4406815 4406815 G C TRIM21 Silent p.G376G 0.44 TCGA-50-6590-01 11 44069547 44069547 T G ACCSL 5'UTR 0.23 TCGA-50-6590-01 11 44105089 44105089 G T ACCS Missense_Mutation p.R457L 0.23 deleterious(0) probably_damaging(1) TCGA-50-6590-01 11 4661732 4661732 G C OR51D1 Missense_Mutation p.V238L 0.22 deleterious(0.01) probably_damaging(0.968) TCGA-50-6590-01 11 46812053 46812053 C T CKAP5 Silent p.L577L 0.18 TCGA-50-6590-01 11 48238559 48238559 G T OR4B1 Missense_Mutation p.L66F 0.21 tolerated(1) possibly_damaging(0.846) TCGA-50-6590-01 11 51515953 51515953 G A OR4C46 Silent p.R224R 0.29 TCGA-50-6590-01 11 5373151 5373151 G A OR51B6 Silent p.Q138Q 0.25 TCGA-50-6590-01 11 5444012 5444012 C A OR51Q1 Silent p.I194I 0.23 TCGA-50-6590-01 11 55136241 55136241 C A OR4A15 Silent p.P294P 0.18 TCGA-50-6590-01 11 55541105 55541105 C A OR5D13 Missense_Mutation p.F64L 0.15 deleterious(0.02) benign(0.32) TCGA-50-6590-01 11 55541106 55541106 C A OR5D13 Missense_Mutation p.L65I 0.16 deleterious(0) probably_damaging(0.983) TCGA-50-6590-01 11 55563504 55563504 C A OR5D14 Missense_Mutation p.P158H 0.37 deleterious(0) possibly_damaging(0.617) TCGA-50-6590-01 11 55579021 55579021 C A OR5L1 Missense_Mutation p.L27I 0.22 deleterious(0.02) benign(0.12) TCGA-50-6590-01 11 55735447 55735447 T A OR10AG1 Missense_Mutation p.I165F 0.17 deleterious(0) probably_damaging(0.985) TCGA-50-6590-01 11 55761571 55761571 G T OR5F1 Missense_Mutation p.F177L 0.15 deleterious(0) possibly_damaging(0.539) TCGA-50-6590-01 11 56019822 56019822 T C OR5T3 Silent p.D49D 0.18 TCGA-50-6590-01 11 56019823 56019823 G T OR5T3 Missense_Mutation p.D50Y 0.18 tolerated(0.06) benign(0.027) TCGA-50-6590-01 11 56086245 56086245 A T OR8K3 Missense_Mutation p.I155F 0.25 deleterious_low_confidence(0.03) benign(0.027) TCGA-50-6590-01 11 56127732 56127732 G A OR8J1 Missense_Mutation p.E4K 0.17 tolerated(0.9) benign(0.004) TCGA-50-6590-01 11 56143269 56143269 C T OR8U1 Missense_Mutation p.T57I 0.15 deleterious(0.01) probably_damaging(0.955) TCGA-50-6590-01 11 57947251 57947251 G A OR9Q1 Missense_Mutation p.C112Y 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-50-6590-01 11 57995652 57995652 G T OR10Q1 Missense_Mutation p.S232R 0.11 tolerated(1) benign(0.001) TCGA-50-6590-01 11 58207086 58207086 G C OR5B12 Missense_Mutation p.P180R 0.20 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-50-6590-01 11 59211574 59211574 G A OR5A1 Silent p.K311K 0.11 TCGA-50-6590-01 11 59271968 59271968 C T OR4D11 Missense_Mutation p.P307L 0.09 tolerated(0.72) benign(0.011) TCGA-50-6590-01 11 5969240 5969240 T C OR56A3 Missense_Mutation p.Y222H 0.19 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 11 59811015 59811015 A T OOSP2 Silent p.I46I 0.16 TCGA-50-6590-01 11 6023420 6023420 C T OR56A4 Missense_Mutation p.R320K 0.33 tolerated(0.59) benign(0.008) TCGA-50-6590-01 11 61187394 61187394 C A CPSF7 Nonsense_Mutation p.G227* 0.21 TCGA-50-6590-01 11 6231720 6231720 C G C11orf42 Missense_Mutation p.P238R 0.23 tolerated_low_confidence(0.21) possibly_damaging(0.554) TCGA-50-6590-01 11 62445448 62445448 G A UBXN1 Missense_Mutation p.R145W 0.39 deleterious(0) probably_damaging(0.971) TCGA-50-6590-01 11 63057949 63057949 T A SLC22A10 Silent p.T104T 0.15 TCGA-50-6590-01 11 63666261 63666261 C A MARK2 Missense_Mutation p.H144N 0.18 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 11 64360946 64360946 C T SLC22A12 Silent p.F192F 0.14 TCGA-50-6590-01 11 65810536 65810536 C A GAL3ST3 Missense_Mutation p.E246D 0.19 deleterious(0) probably_damaging(0.998) TCGA-50-6590-01 11 66367067 66367067 C A CCS Missense_Mutation p.H130N 0.23 tolerated(0.11) benign(0.354) TCGA-50-6590-01 11 67075137 67075137 G A SSH3 Silent p.Q240Q 0.08 TCGA-50-6590-01 11 6789238 6789238 C G OR2AG2 Nonstop_Mutation p.*317Yext*? 0.37 TCGA-50-6590-01 11 68522274 68522274 C A CPT1A 3'Flank 0.18 TCGA-50-6590-01 11 6867090 6867090 C A OR10A5 Silent p.P59P 0.14 TCGA-50-6590-01 11 71725417 71725418 CT - NUMA1 Frame_Shift_Del p.E1044Vfs*52 0.19 TCGA-50-6590-01 11 75160019 75160019 C T GDPD5 Intron 0.18 TCGA-50-6590-01 11 75277965 75277965 G C SERPINH1 Missense_Mutation p.D191H 0.09 deleterious(0.04) possibly_damaging(0.884) TCGA-50-6590-01 11 85979592 85979592 A C EED Missense_Mutation p.I319L 0.07 deleterious(0.04) benign(0.104) TCGA-50-6590-01 11 89028421 89028421 G T TYR Missense_Mutation p.A493S 0.13 tolerated(0.39) benign(0.003) TCGA-50-6590-01 11 89768514 89768514 C T TRIM49C Silent p.D45D 0.17 TCGA-50-6590-01 11 92538341 92538341 T G FAT3 Missense_Mutation p.F2973L 0.16 probably_damaging(0.94) TCGA-50-6590-01 11 93542890 93542890 A T MED17 Missense_Mutation p.Q531L 0.11 deleterious(0) possibly_damaging(0.813) TCGA-50-6590-01 11 9853807 9853807 C A SBF2 Missense_Mutation p.V1206F 0.22 deleterious(0) probably_damaging(0.964) TCGA-50-6590-01 11 9990064 9990064 T C SBF2 Missense_Mutation p.Q475R 0.19 deleterious(0.04) possibly_damaging(0.811) TCGA-50-6590-01 12 101603519 101603519 C A SLC5A8 Silent p.G36G 0.33 TCGA-50-6590-01 12 103240674 103240674 G T PAH Missense_Mutation p.T323K 0.19 deleterious(0) probably_damaging(0.998) TCGA-50-6590-01 12 103240676 103240676 G T PAH Silent p.A322A 0.19 TCGA-50-6590-01 12 107048028 107048028 G A RFX4 Missense_Mutation p.A81T 0.14 deleterious(0.01) probably_damaging(0.988) TCGA-50-6590-01 12 108634280 108634280 G T WSCD2 Missense_Mutation p.G435V 0.26 deleterious(0) possibly_damaging(0.714) TCGA-50-6590-01 12 110290384 110290384 G T GLTP Missense_Mutation p.N202K 0.30 deleterious(0) benign(0.26) TCGA-50-6590-01 12 11036773 11036773 G A PRH1 Missense_Mutation p.S15L 0.49 deleterious_low_confidence(0.01) unknown(0) TCGA-50-6590-01 12 112371823 112371823 G C TMEM116 Missense_Mutation p.I200M 0.34 deleterious(0.02) possibly_damaging(0.812) TCGA-50-6590-01 12 113307716 113307716 C A RPH3A Missense_Mutation p.A223D 0.26 tolerated(0.07) benign(0.424) TCGA-50-6590-01 12 113822053 113822053 G A PLBD2 Silent p.K367K 0.11 TCGA-50-6590-01 12 120592790 120592790 C G GCN1L1 Missense_Mutation p.D1229H 0.27 probably_damaging(0.999) TCGA-50-6590-01 12 123098300 123098300 G A KNTC1 Missense_Mutation p.E1957K 0.26 deleterious(0.04) probably_damaging(0.995) TCGA-50-6590-01 12 124144730 124144730 C G GTF2H3 Missense_Mutation p.S292C 0.20 tolerated(0.12) unknown(0) TCGA-50-6590-01 12 124274537 124274537 C A DNAH10 Missense_Mutation p.R501S 0.28 benign(0.167) TCGA-50-6590-01 12 125441676 125441676 G A DHX37 Silent p.I721I 0.32 TCGA-50-6590-01 12 12870860 12870866 CAGGAAC - CDKN1B Frame_Shift_Del p.R30Sfs*10 0.26 TCGA-50-6590-01 12 130831590 130831590 T A PIWIL1 Nonsense_Mutation p.Y212* 0.37 TCGA-50-6590-01 12 131622690 131622690 C G GPR133 Silent p.A815A 0.39 TCGA-50-6590-01 12 133357432 133357432 C T GOLGA3 Silent p.Q1178Q 0.37 TCGA-50-6590-01 12 14610174 14610175 - A ATF7IP Frame_Shift_Ins p.R703Kfs*32 0.44 TCGA-50-6590-01 12 20885915 20885915 G T SLCO1C1 Missense_Mutation p.S420I 0.38 deleterious(0.02) possibly_damaging(0.774) TCGA-50-6590-01 12 21659867 21659867 G T GOLT1B Missense_Mutation p.G25V 0.50 deleterious(0) probably_damaging(1) TCGA-50-6590-01 12 247543 247543 C A IQSEC3 Silent p.I338I 0.45 TCGA-50-6590-01 12 2566801 2566801 C A CACNA1C Missense_Mutation p.A229D 0.41 deleterious(0.01) benign(0.066) TCGA-50-6590-01 12 27933771 27933771 G T KLHL42 Missense_Mutation p.G170W 0.28 deleterious(0.03) benign(0.195) TCGA-50-6590-01 12 32480545 32480545 G C BICD1 Missense_Mutation p.E386Q 0.32 deleterious(0.04) probably_damaging(0.989) TCGA-50-6590-01 12 40643696 40643696 C G LRRK2 Missense_Mutation p.P303A 0.25 tolerated(0.1) benign(0.038) TCGA-50-6590-01 12 41410554 41410554 A T CNTN1 Missense_Mutation p.E752V 0.26 tolerated(0.29) benign(0.215) TCGA-50-6590-01 12 41957357 41957357 G C PDZRN4 Missense_Mutation p.G458A 0.11 deleterious(0) probably_damaging(1) TCGA-50-6590-01 12 45059341 45059341 C A NELL2 Missense_Mutation p.C507F 0.27 deleterious(0) probably_damaging(0.987) TCGA-50-6590-01 12 45169922 45169922 A T NELL2 Silent p.A308A 0.24 TCGA-50-6590-01 12 48091454 48091454 G C RPAP3 Missense_Mutation p.L115V 0.17 tolerated(0.76) benign(0) TCGA-50-6590-01 12 52180553 52180553 G C SCN8A Missense_Mutation p.K1390N 0.09 tolerated(0.22) possibly_damaging(0.653) TCGA-50-6590-01 12 52306955 52306955 C A ACVRL1 Missense_Mutation p.T45N 0.33 tolerated(0.16) benign(0.024) TCGA-50-6590-01 12 53663690 53663690 C T ESPL1 Silent p.L322L 0.38 TCGA-50-6590-01 12 55820153 55820153 G A OR6C76 Missense_Mutation p.G39E 0.08 deleterious_low_confidence(0.01) probably_damaging(0.93) TCGA-50-6590-01 12 57423272 57423272 C A MYO1A Missense_Mutation p.G942W 0.39 deleterious(0) possibly_damaging(0.886) TCGA-50-6590-01 12 57865470 57865470 C T GLI1 Missense_Mutation p.H983Y 0.34 deleterious_low_confidence(0.01) benign(0.285) TCGA-50-6590-01 12 67699249 67699249 G T CAND1 Nonsense_Mutation p.G601* 0.23 TCGA-50-6590-01 12 6978433 6978433 G T TPI1 Missense_Mutation p.Q149H 0.09 deleterious(0.04) benign(0.066) TCGA-50-6590-01 12 70954555 70954555 G T PTPRB Missense_Mutation p.T1443K 0.34 tolerated(0.29) benign(0.046) TCGA-50-6590-01 12 7647728 7647728 A G CD163 Missense_Mutation p.W457R 0.11 deleterious(0.02) probably_damaging(1) TCGA-50-6590-01 12 85626523 85626523 G T LRRIQ1 Missense_Mutation p.V1669F 0.25 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 12 88568469 88568469 G C TMTC3 Missense_Mutation p.E429Q 0.16 tolerated(0.1) possibly_damaging(0.458) TCGA-50-6590-01 12 94976067 94976067 C A TMCC3 Missense_Mutation p.G109V 0.41 tolerated(0.12) benign(0.054) TCGA-50-6590-01 13 103468881 103468881 G C BIVM-ERCC5 Silent p.R166R 0.06 TCGA-50-6590-01 13 103518145 103518145 G T BIVM-ERCC5 Missense_Mutation p.A1121S 0.26 tolerated(0.68) benign(0.04) TCGA-50-6590-01 13 109777466 109777466 G A MYO16 Missense_Mutation p.R1159K 0.22 tolerated(0.08) probably_damaging(0.997) TCGA-50-6590-01 13 111367917 111367917 G T ING1 Missense_Mutation p.G43W 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.692) TCGA-50-6590-01 13 111367918 111367918 G T ING1 Missense_Mutation p.G43V 0.25 tolerated_low_confidence(0.05) benign(0.336) TCGA-50-6590-01 13 29598829 29598829 G C MTUS2 Silent p.G8G 0.20 TCGA-50-6590-01 13 33704305 33704305 C A STARD13 Missense_Mutation p.G170V 0.24 tolerated(0.1) benign(0.185) TCGA-50-6590-01 13 44442842 44442842 C G CCDC122 Silent p.L48L 0.19 TCGA-50-6590-01 13 46656575 46656575 C T CPB2 Splice_Site p.X128_splice 0.19 TCGA-50-6590-01 13 47303002 47303002 G C LRCH1 Missense_Mutation p.K630N 0.24 deleterious(0) probably_damaging(1) TCGA-50-6590-01 13 61986893 61986893 C A PCDH20 Missense_Mutation p.V447F 0.31 deleterious(0.05) benign(0.197) TCGA-50-6590-01 13 84453626 84453626 A T SLITRK1 Missense_Mutation p.W673R 0.17 tolerated(0.32) benign(0.024) TCGA-50-6590-01 13 97639078 97639078 A G OXGR1 Silent p.A312A 0.20 TCGA-50-6590-01 14 100795348 100795348 G T SLC25A47 Nonsense_Mutation p.E205* 0.28 TCGA-50-6590-01 14 106311789 106311789 G T IGHD Missense_Mutation p.Q75K 0.20 tolerated(0.67) benign(0) TCGA-50-6590-01 14 106733568 106733568 G T IGHV1-24 Silent p.T4T 0.24 TCGA-50-6590-01 14 20295722 20295722 C A OR4N2 Missense_Mutation p.L39I 0.17 tolerated(0.19) benign(0.244) TCGA-50-6590-01 14 20296242 20296242 T A OR4N2 Missense_Mutation p.L212Q 0.10 deleterious(0) probably_damaging(0.958) TCGA-50-6590-01 14 22573927 22573927 C G TRAV24 Silent p.S49S 0.18 TCGA-50-6590-01 14 23398556 23398556 C A PRMT5 Silent p.A5A 0.43 TCGA-50-6590-01 14 24901200 24901200 T A KHNYN Missense_Mutation p.C245S 0.25 tolerated(1) benign(0) TCGA-50-6590-01 14 26949200 26949200 G C NOVA1 Missense_Mutation p.P144A 0.17 tolerated(0.22) unknown(0) TCGA-50-6590-01 14 28734117 28734117 G T BNIP3P1 RNA 0.11 TCGA-50-6590-01 14 35778168 35778168 G C PSMA6 Missense_Mutation p.E74Q 0.20 tolerated(0.11) benign(0.01) TCGA-50-6590-01 14 35778193 35778193 G C PSMA6 Missense_Mutation p.G82A 0.21 deleterious(0) probably_damaging(0.98) TCGA-50-6590-01 14 47504309 47504309 G T MDGA2 Missense_Mutation p.S575Y 0.16 deleterious(0) probably_damaging(0.971) TCGA-50-6590-01 14 53119806 53119806 C A ERO1L Nonsense_Mutation p.E346* 0.24 TCGA-50-6590-01 14 55309739 55309739 C A GCH1 3'UTR 0.19 TCGA-50-6590-01 14 60193858 60193858 C T RTN1 Missense_Mutation p.G515D 0.24 tolerated(0.12) benign(0.004) TCGA-50-6590-01 14 63416960 63416960 C G KCNH5 Silent p.V420V 0.41 TCGA-50-6590-01 14 63671695 63671695 C - RHOJ Frame_Shift_Del p.L37Cfs*2 0.24 TCGA-50-6590-01 14 70238119 70238119 G T SRSF5 Missense_Mutation p.V254L 0.16 tolerated_low_confidence(0.45) unknown(0) TCGA-50-6590-01 14 70418870 70418870 C A SMOC1 Missense_Mutation p.R39S 0.13 tolerated(0.06) probably_damaging(0.985) TCGA-50-6590-01 14 70461123 70461123 C A SMOC1 Missense_Mutation p.T197K 0.03 deleterious(0.01) benign(0.392) TCGA-50-6590-01 14 70714342 70714342 G C ADAM21P1 RNA 0.13 TCGA-50-6590-01 14 75150054 75150054 C T AREL1 Silent p.V142V 0.31 TCGA-50-6590-01 14 77732878 77732878 C G NGB 3'UTR 0.27 TCGA-50-6590-01 14 88477568 88477568 G T GPR65 Missense_Mutation p.R126M 0.16 deleterious(0) probably_damaging(0.988) TCGA-50-6590-01 14 88477569 88477569 G T GPR65 Missense_Mutation p.R126S 0.15 deleterious(0) probably_damaging(0.914) TCGA-50-6590-01 14 88737097 88737097 A T KCNK10 Intron 0.14 TCGA-50-6590-01 14 93761036 93761036 T C BTBD7 Silent p.A110A 0.21 TCGA-50-6590-01 14 94044364 94044364 G A UNC79 Missense_Mutation p.M619I 0.18 tolerated(0.1) benign(0.046) TCGA-50-6590-01 14 94084637 94084637 G C UNC79 Missense_Mutation p.A1265P 0.15 tolerated(0.05) probably_damaging(0.999) TCGA-50-6590-01 14 94731755 94731755 G T PPP4R4 Silent p.L743L 0.21 TCGA-50-6590-01 14 94908973 94908973 C A SERPINA11 Silent p.L413L 0.18 TCGA-50-6590-01 14 96949366 96949366 G A AK7 Missense_Mutation p.R595K 0.14 tolerated(0.48) benign(0.009) TCGA-50-6590-01 14 96949376 96949376 C G AK7 Missense_Mutation p.I598M 0.06 tolerated(0.53) benign(0.403) TCGA-50-6590-01 15 100695480 100695480 C A ADAMTS17 Missense_Mutation p.R409S 0.20 tolerated(0.06) benign(0.287) TCGA-50-6590-01 15 23889815 23889815 A T MAGEL2 Missense_Mutation p.N422K 0.24 deleterious(0.05) possibly_damaging(0.655) TCGA-50-6590-01 15 23890520 23890520 G A MAGEL2 Silent p.F187F 0.21 TCGA-50-6590-01 15 25448280 25448280 G T SNORD115-20 5'Flank 0.26 TCGA-50-6590-01 15 26812859 26812859 A T GABRB3 Missense_Mutation p.L235Q 0.11 deleterious(0) probably_damaging(1) TCGA-50-6590-01 15 28478365 28478365 A G HERC2 Silent p.F1534F 0.08 TCGA-50-6590-01 15 34130391 34130391 T C RYR3 Silent p.F4070F 0.28 TCGA-50-6590-01 15 34354914 34354914 C T CHRM5 5'UTR 0.20 TCGA-50-6590-01 15 41487996 41487996 G T EXD1 Missense_Mutation p.L175M 0.12 deleterious(0.01) probably_damaging(1) TCGA-50-6590-01 15 43252861 43252861 T A UBR1 Missense_Mutation p.Q1580L 0.20 deleterious(0.01) benign(0) TCGA-50-6590-01 15 48060921 48060921 G C SEMA6D Missense_Mutation p.D637H 0.21 tolerated(0.1) possibly_damaging(0.503) TCGA-50-6590-01 15 48577341 48577341 G A SLC12A1 Missense_Mutation p.E842K 0.27 tolerated(0.75) benign(0.275) TCGA-50-6590-01 15 63102154 63102154 G T TLN2 Nonsense_Mutation p.E2232* 0.33 TCGA-50-6590-01 15 68620471 68620471 G A ITGA11 Silent p.P677P 0.27 TCGA-50-6590-01 15 72954823 72954823 C A GOLGA6B Missense_Mutation p.L360M 0.16 tolerated(0.05) possibly_damaging(0.82) TCGA-50-6590-01 15 90190167 90190167 G T KIF7 Missense_Mutation p.P561H 0.29 deleterious(0.01) possibly_damaging(0.823) TCGA-50-6590-01 15 90190168 90190168 G T KIF7 Missense_Mutation p.P561T 0.29 tolerated(0.12) possibly_damaging(0.501) TCGA-50-6590-01 16 16150007 16150007 G T ABCC1 Missense_Mutation p.G511V 0.19 deleterious(0) probably_damaging(0.987) TCGA-50-6590-01 16 20552030 20552030 C A ACSM2B Missense_Mutation p.K525N 0.19 tolerated(0.08) benign(0.03) TCGA-50-6590-01 16 21261823 21261823 T C ANKS4B Silent p.D312D 0.11 TCGA-50-6590-01 16 22268994 22268994 C G EEF2K Missense_Mutation p.S311C 0.23 deleterious(0) probably_damaging(0.998) TCGA-50-6590-01 16 28508878 28508903 GGCGGGTAGAGGCCGAGGAATCTGCA - APOBR Frame_Shift_Del p.V841Rfs*52 0.36 TCGA-50-6590-01 16 30537224 30537224 A C ZNF768 Missense_Mutation p.F79L 0.14 deleterious_low_confidence(0) benign(0.057) TCGA-50-6590-01 16 30745918 30745918 G C SRCAP Missense_Mutation p.Q2237H 0.10 possibly_damaging(0.62) TCGA-50-6590-01 16 31341697 31341697 C G ITGAM Missense_Mutation p.F1044L 0.37 tolerated(1) benign(0.018) TCGA-50-6590-01 16 31476282 31476282 A G ARMC5 Intron 0.38 TCGA-50-6590-01 16 3254739 3254739 C G OR1F1 Missense_Mutation p.P165A 0.09 deleterious(0) benign(0.016) TCGA-50-6590-01 16 32890844 32890844 G T SLC6A10P RNA 0.11 TCGA-50-6590-01 16 3350096 3350096 C G TIGD7 Missense_Mutation p.Q173H 0.04 deleterious(0.01) possibly_damaging(0.458) TCGA-50-6590-01 16 3350604 3350604 C G TIGD7 Missense_Mutation p.R4T 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.863) TCGA-50-6590-01 16 34739687 34739687 C G RP11-80F22.15 RNA 0.23 TCGA-50-6590-01 16 48141258 48141258 C A ABCC12 Missense_Mutation p.G817V 0.18 deleterious(0.03) benign(0.049) TCGA-50-6590-01 16 48201550 48201550 T A ABCC11 Missense_Mutation p.T1305S 0.32 deleterious(0.02) probably_damaging(0.989) TCGA-50-6590-01 16 48256525 48256525 T C ABCC11 Missense_Mutation p.H254R 0.22 tolerated(0.07) possibly_damaging(0.519) TCGA-50-6590-01 16 49430386 49430386 A G C16orf78 Silent p.P149P 0.40 TCGA-50-6590-01 16 49671243 49671243 G T ZNF423 Nonsense_Mutation p.S607* 0.31 TCGA-50-6590-01 16 51175915 51175915 A T SALL1 Missense_Mutation p.I73N 0.27 deleterious(0) probably_damaging(0.998) TCGA-50-6590-01 16 55543151 55543151 G T LPCAT2 Missense_Mutation p.G20W 0.38 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-50-6590-01 16 56920913 56920913 C A SLC12A3 Missense_Mutation p.H696N 0.28 tolerated(0.37) possibly_damaging(0.651) TCGA-50-6590-01 16 61761058 61761058 G T CDH8 Missense_Mutation p.N492K 0.24 deleterious(0.01) benign(0.172) TCGA-50-6590-01 16 61859037 61859037 C T CDH8 Silent p.E238E 0.14 TCGA-50-6590-01 16 64981514 64981514 C A CDH11 Missense_Mutation p.D795Y 0.27 deleterious_low_confidence(0) possibly_damaging(0.892) TCGA-50-6590-01 16 67006790 67006790 C T CES3 Silent p.P518P 0.08 TCGA-50-6590-01 16 67862182 67862182 G T CENPT Missense_Mutation p.F558L 0.23 deleterious(0.01) possibly_damaging(0.819) TCGA-50-6590-01 16 68225567 68225567 G A NFATC3 Missense_Mutation p.D999N 0.07 tolerated_low_confidence(0.22) possibly_damaging(0.455) TCGA-50-6590-01 16 68835796 68835796 G T CDH1 Missense_Mutation p.Q129H 0.42 tolerated(0.71) benign(0) TCGA-50-6590-01 16 72830811 72830811 C G ZFHX3 Missense_Mutation p.G1924R 0.15 probably_damaging(0.981) TCGA-50-6590-01 16 81183300 81183300 T A PKD1L2 RNA 0.61 TCGA-50-6590-01 16 84256316 84256316 C A KCNG4 Missense_Mutation p.G356V 0.33 deleterious(0) probably_damaging(1) TCGA-50-6590-01 16 8995999 8995999 C T USP7 Missense_Mutation p.E663K 0.05 deleterious(0) possibly_damaging(0.83) TCGA-50-6590-01 16 9858499 9858499 C G GRIN2A Missense_Mutation p.A968P 0.06 deleterious(0) possibly_damaging(0.832) TCGA-50-6590-01 17 11572978 11572978 A T DNAH9 Missense_Mutation p.R1074W 0.32 possibly_damaging(0.447) TCGA-50-6590-01 17 11597192 11597192 A T DNAH9 Missense_Mutation p.K1541I 0.30 possibly_damaging(0.569) TCGA-50-6590-01 17 16456492 16456492 C G ZNF287 Missense_Mutation p.E322Q 0.11 tolerated(0.48) benign(0.329) TCGA-50-6590-01 17 21731048 21731048 A G UBBP4 Missense_Mutation p.Q117R 0.23 deleterious(0) probably_damaging(0.956) TCGA-50-6590-01 17 21731348 21731348 G A UBBP4 Intron 0.10 TCGA-50-6590-01 17 27216019 27216019 T G FLOT2 Missense_Mutation p.K25N 0.27 tolerated(0.15) possibly_damaging(0.904) TCGA-50-6590-01 17 28003892 28003892 A T SSH2 Missense_Mutation p.V160E 0.10 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 17 28417509 28417509 G A EFCAB5 Missense_Mutation p.V1252I 0.11 tolerated(0.25) benign(0.008) TCGA-50-6590-01 17 29221104 29221104 C G ATAD5 Missense_Mutation p.L1745V 0.23 deleterious(0) probably_damaging(0.927) TCGA-50-6590-01 17 30216303 30216303 C A UTP6 Splice_Site p.X181_splice 0.13 TCGA-50-6590-01 17 31105561 31105561 C A MYO1D Missense_Mutation p.S112I 0.16 deleterious(0) probably_damaging(1) TCGA-50-6590-01 17 33690603 33690603 A T SLFN11 Missense_Mutation p.L75Q 0.17 tolerated(0.28) benign(0.026) TCGA-50-6590-01 17 34072748 34072748 G A GAS2L2 Silent p.L590L 0.24 TCGA-50-6590-01 17 3422138 3422138 G A TRPV3 Missense_Mutation p.A606V 0.17 tolerated(1) probably_damaging(0.988) TCGA-50-6590-01 17 34493270 34493270 A G TBC1D3B 3'UTR 0.17 TCGA-50-6590-01 17 34797366 34797366 C A TBC1D3G 3'UTR 0.15 TCGA-50-6590-01 17 34842563 34842563 G T ZNHIT3 Missense_Mutation p.S7I 0.18 deleterious_low_confidence(0.05) possibly_damaging(0.748) TCGA-50-6590-01 17 34941772 34941772 A T GGNBP2 Missense_Mutation p.S420C 0.18 deleterious(0.02) benign(0.437) TCGA-50-6590-01 17 38146160 38146160 G T PSMD3 Missense_Mutation p.W285C 0.15 tolerated(0.12) benign(0.019) TCGA-50-6590-01 17 3819483 3819483 G A P2RX1 Missense_Mutation p.L13F 0.29 tolerated(0.6) benign(0.001) TCGA-50-6590-01 17 38859404 38859404 G T KRT24 Missense_Mutation p.P181H 0.09 deleterious(0.01) probably_damaging(0.99) TCGA-50-6590-01 17 39623522 39623522 G T KRT32 Missense_Mutation p.P19H 0.15 tolerated(0.09) possibly_damaging(0.46) TCGA-50-6590-01 17 41567782 41567782 G C DHX8 Silent p.L86L 0.14 TCGA-50-6590-01 17 41569554 41569554 A T DHX8 Missense_Mutation p.M133L 0.12 tolerated(0.34) unknown(0) TCGA-50-6590-01 17 42475588 42475588 C A GPATCH8 Missense_Mutation p.S1286I 0.10 tolerated(0.09) unknown(0) TCGA-50-6590-01 17 42882068 42882068 C A GJC1 Missense_Mutation p.G373V 0.08 deleterious(0.02) benign(0.094) TCGA-50-6590-01 17 42953452 42953452 T A EFTUD2 Missense_Mutation p.E240V 0.08 deleterious(0.02) probably_damaging(0.993) TCGA-50-6590-01 17 44116524 44116524 A C KANSL1 Missense_Mutation p.V754G 0.29 tolerated(0.34) benign(0.001) TCGA-50-6590-01 17 44116525 44116525 C A KANSL1 Missense_Mutation p.V754L 0.30 tolerated(0.71) benign(0.001) TCGA-50-6590-01 17 4849269 4849269 C G PFN1 Missense_Mutation p.E117Q 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-50-6590-01 17 4858809 4858809 C G ENO3 Missense_Mutation p.L259V 0.18 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-50-6590-01 17 48699019 48699019 A G CACNA1G Splice_Site p.X1976_splice 0.10 TCGA-50-6590-01 17 4905404 4905404 A C KIF1C Silent p.L138L 0.06 TCGA-50-6590-01 17 5048835 5048835 C - USP6 Frame_Shift_Del p.P710Hfs*10 0.26 TCGA-50-6590-01 17 56247594 56247594 C T OR4D2 Missense_Mutation p.S193L 0.10 deleterious(0.05) possibly_damaging(0.7) TCGA-50-6590-01 17 58725274 58725278 TCTTC CTTT PPM1D Frame_Shift_Del p.F283Sfs*37 0.24 TCGA-50-6590-01 17 58725327 58725327 C A PPM1D Missense_Mutation p.L301I 0.20 tolerated(0.6) possibly_damaging(0.576) TCGA-50-6590-01 17 59115345 59115345 G A BCAS3 Missense_Mutation p.A635T 0.15 tolerated(0.46) benign(0.078) TCGA-50-6590-01 17 59477534 59477534 C T TBX2 5'UTR 0.19 TCGA-50-6590-01 17 61498018 61498018 G C TANC2 Missense_Mutation p.G1559R 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.77) TCGA-50-6590-01 17 61995703 61995703 T A GH1 Intron 0.18 TCGA-50-6590-01 17 65040999 65040999 C G CACNG1 Missense_Mutation p.P75A 0.22 deleterious(0.02) benign(0.009) TCGA-50-6590-01 17 66920869 66920869 G A ABCA8 Missense_Mutation p.P472L 0.17 deleterious(0.03) benign(0.137) TCGA-50-6590-01 17 70118928 70118928 A C SOX9 Missense_Mutation p.K167T 0.07 deleterious(0) benign(0.272) TCGA-50-6590-01 17 72469746 72469746 T A CD300A Missense_Mutation p.Y38N 0.20 deleterious(0) probably_damaging(1) TCGA-50-6590-01 17 73657728 73657728 C G RECQL5 Missense_Mutation p.E278Q 0.07 tolerated(0.49) benign(0.173) TCGA-50-6590-01 17 74080340 74080340 C G EXOC7 Missense_Mutation p.E654Q 0.08 deleterious(0.01) possibly_damaging(0.823) TCGA-50-6590-01 17 74470538 74470538 C T RHBDF2 Missense_Mutation p.E490K 0.14 tolerated(0.73) benign(0.102) TCGA-50-6590-01 17 74475819 74475819 G A RHBDF2 Missense_Mutation p.R119C 0.15 deleterious(0.01) probably_damaging(0.97) TCGA-50-6590-01 17 74765921 74765921 C G MFSD11 Missense_Mutation p.S281C 0.04 deleterious(0.05) benign(0.214) TCGA-50-6590-01 17 7578370 7578370 C A TP53 Splice_Site p.X187_splice 0.37 TCGA-50-6590-01 17 76475672 76475672 C A DNAH17 Missense_Mutation p.A2585S 0.11 benign(0.178) TCGA-50-6590-01 17 7749569 7749569 G C KDM6B Missense_Mutation p.G137A 0.27 unknown(0) TCGA-50-6590-01 17 79563220 79563220 G - NPLOC4 Frame_Shift_Del p.Q348Rfs*82 0.17 TCGA-50-6590-01 17 79872196 79872196 T A SIRT7 Missense_Mutation p.I264F 0.15 deleterious(0) probably_damaging(0.93) TCGA-50-6590-01 17 80273286 80273286 G T CD7 Silent p.R212R 0.18 TCGA-50-6590-01 17 80789947 80789947 C T ZNF750 Silent p.Q128Q 0.13 TCGA-50-6590-01 17 9536222 9536222 A C WDR16 Missense_Mutation p.I398L 0.11 tolerated(0.06) possibly_damaging(0.728) TCGA-50-6590-01 18 14782613 14782613 G T ANKRD30B Nonsense_Mutation p.E524* 0.29 TCGA-50-6590-01 18 22804792 22804792 G A ZNF521 Silent p.T1030T 0.30 TCGA-50-6590-01 18 25562964 25562964 C T CDH2 Missense_Mutation p.D765N 0.18 deleterious(0) probably_damaging(1) TCGA-50-6590-01 18 28586948 28586948 C A DSC3 Nonsense_Mutation p.G605* 0.34 TCGA-50-6590-01 18 28993189 28993189 G A DSG4 Silent p.V937V 0.23 TCGA-50-6590-01 18 29040804 29040804 C A DSG3 Missense_Mutation p.S231R 0.18 deleterious(0) probably_damaging(0.969) TCGA-50-6590-01 18 30092986 30092986 C T WBP11P1 RNA 0.22 TCGA-50-6590-01 18 34081919 34081919 G A FHOD3 Missense_Mutation p.R121Q 0.19 tolerated(0.1) probably_damaging(0.975) TCGA-50-6590-01 18 40850492 40850492 A T SYT4 Nonsense_Mutation p.C364* 0.28 TCGA-50-6590-01 18 42532590 42532590 C A SETBP1 Missense_Mutation p.F1095L 0.39 deleterious(0) probably_damaging(0.986) TCGA-50-6590-01 18 42532591 42532591 C A SETBP1 Missense_Mutation p.H1096N 0.38 deleterious(0) probably_damaging(0.991) TCGA-50-6590-01 18 43418899 43418900 - A SIGLEC15 Frame_Shift_Ins p.A239Gfs*73 0.14 TCGA-50-6590-01 18 50592529 50592529 T A DCC Silent p.P418P 0.26 TCGA-50-6590-01 18 50831975 50831975 C T DCC Missense_Mutation p.P647S 0.15 tolerated(0.07) possibly_damaging(0.797) TCGA-50-6590-01 18 55247342 55247342 C A FECH Missense_Mutation p.A53S 0.21 tolerated(0.24) benign(0.015) TCGA-50-6590-01 18 61231325 61231325 C G SERPINB12 Missense_Mutation p.T206R 0.35 deleterious(0.02) probably_damaging(1) TCGA-50-6590-01 18 61460485 61460485 G C SERPINB7 Missense_Mutation p.A104P 0.25 deleterious(0.02) benign(0.133) TCGA-50-6590-01 18 61558726 61558726 C G SERPINB2 Missense_Mutation p.F16L 0.06 tolerated(0.3) benign(0.198) TCGA-50-6590-01 18 63530201 63530201 C A CDH7 Intron 0.36 TCGA-50-6590-01 18 6959383 6959383 T A LAMA1 Missense_Mutation p.S2579C 0.29 deleterious(0.03) probably_damaging(0.988) TCGA-50-6590-01 18 77894245 77894245 G T ADNP2 Nonsense_Mutation p.G317* 0.24 TCGA-50-6590-01 19 10078711 10078712 - G COL5A3 Frame_Shift_Ins p.G1454Rfs*103 0.38 TCGA-50-6590-01 19 10335474 10335474 G T S1PR2 Silent p.A36A 0.20 TCGA-50-6590-01 19 11943358 11943358 G A ZNF440 Missense_Mutation p.R456K 0.11 tolerated(1) benign(0.015) TCGA-50-6590-01 19 11943498 11943498 G C ZNF440 Missense_Mutation p.D503H 0.08 tolerated(0.12) benign(0.166) TCGA-50-6590-01 19 12273958 12273958 G T ZNF136 5'UTR 0.26 TCGA-50-6590-01 19 12790352 12790352 T C DHPS Silent p.V199V 0.36 TCGA-50-6590-01 19 12825904 12825904 A T TNPO2 Missense_Mutation p.V243E 0.15 tolerated(0.13) benign(0.054) TCGA-50-6590-01 19 1295739 1295739 G T EFNA2 Missense_Mutation p.W112C 0.42 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 19 13939467 13939467 G A ZSWIM4 Silent p.R679R 0.38 TCGA-50-6590-01 19 15299958 15299958 C A NOTCH3 Missense_Mutation p.R407M 0.31 deleterious(0.03) possibly_damaging(0.841) TCGA-50-6590-01 19 15354287 15354287 C T BRD4 Missense_Mutation p.A865T 0.36 possibly_damaging(0.499) TCGA-50-6590-01 19 20727634 20727634 C A ZNF737 Missense_Mutation p.G459C 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-50-6590-01 19 2099252 2099252 A C IZUMO4 Splice_Site p.X203_splice 0.30 TCGA-50-6590-01 19 22154078 22154078 T C ZNF208 Missense_Mutation p.Y1253C 0.42 deleterious(0) benign(0.411) TCGA-50-6590-01 19 22271627 22271630 CTTA - ZNF257 Frame_Shift_Del p.T360Nfs*4 0.08 TCGA-50-6590-01 19 23836222 23836222 C A ZNF675 Nonsense_Mutation p.E505* 0.36 TCGA-50-6590-01 19 31770504 31770504 G T TSHZ3 Silent p.A65A 0.31 TCGA-50-6590-01 19 34791804 34791804 G T KIAA0355 Missense_Mutation p.M142I 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.584) TCGA-50-6590-01 19 36386965 36386965 G A NFKBID Missense_Mutation p.P175S 0.29 tolerated(0.23) benign(0.02) TCGA-50-6590-01 19 37117543 37117543 C A ZNF382 Silent p.A248A 0.36 TCGA-50-6590-01 19 38899434 38899434 A T FAM98C Missense_Mutation p.E321V 0.25 deleterious(0) probably_damaging(0.986) TCGA-50-6590-01 19 39294168 39294168 G C LGALS4 Missense_Mutation p.F188L 0.14 tolerated(0.2) benign(0.006) TCGA-50-6590-01 19 40541949 40541949 C A ZNF780B Missense_Mutation p.G273C 0.27 deleterious(0) probably_damaging(0.974) TCGA-50-6590-01 19 43762511 43762511 T A PSG9 Silent p.A362A 0.33 TCGA-50-6590-01 19 44660544 44660544 C A ZNF234 Silent p.P125P 0.30 TCGA-50-6590-01 19 45375315 45375315 G A PVRL2 Silent p.S228S 0.10 TCGA-50-6590-01 19 46184982 46184982 C T GIPR Intron 0.50 TCGA-50-6590-01 19 49227757 49227757 C T RASIP1 Missense_Mutation p.R794Q 0.24 tolerated(0.6) benign(0.103) TCGA-50-6590-01 19 52003553 52003553 C G SIGLEC12 Silent p.A143A 0.25 TCGA-50-6590-01 19 52994605 52994605 G T ZNF578 5'UTR 0.36 TCGA-50-6590-01 19 53432347 53432347 G C ZNF321P Missense_Mutation p.Q171E 0.09 tolerated(0.08) benign(0.017) TCGA-50-6590-01 19 54711356 54711356 G T RPS9 Silent p.G166G 0.35 TCGA-50-6590-01 19 54756398 54756398 G T LILRB5 Missense_Mutation p.P497T 0.25 deleterious(0.03) probably_damaging(0.923) TCGA-50-6590-01 19 55177761 55177761 G A LILRB4 Silent p.Q315Q 0.12 TCGA-50-6590-01 19 55341702 55341702 C T KIR3DL1 Missense_Mutation p.P436L 0.28 deleterious(0) benign(0.013) TCGA-50-6590-01 19 55449458 55449458 G C NLRP7 Missense_Mutation p.L695V 0.07 deleterious(0) possibly_damaging(0.859) TCGA-50-6590-01 19 55494845 55494845 G T NLRP2 Missense_Mutation p.K593N 0.35 tolerated(0.91) benign(0.152) TCGA-50-6590-01 19 56538929 56538929 C A NLRP5 Missense_Mutation p.R444S 0.29 tolerated(0.19) benign(0.024) TCGA-50-6590-01 19 5711898 5711898 C A LONP1 Missense_Mutation p.A252S 0.46 tolerated(0.54) benign(0.01) TCGA-50-6590-01 19 5711899 5711899 G C LONP1 Missense_Mutation p.S251R 0.47 tolerated(0.22) benign(0.006) TCGA-50-6590-01 19 57665747 57665747 T A DUXA 3'UTR 0.33 TCGA-50-6590-01 19 57666721 57666721 C A DUXA Missense_Mutation p.R153I 0.25 deleterious(0.03) probably_damaging(0.959) TCGA-50-6590-01 19 886165 886165 C T MED16 Missense_Mutation p.V162I 0.23 deleterious(0.03) benign(0.299) TCGA-50-6590-01 19 9006351 9006351 A T MUC16 Missense_Mutation p.L13223M 0.06 probably_damaging(0.98) TCGA-50-6590-01 19 9325354 9325354 G T OR7D4 Missense_Mutation p.H54N 0.31 deleterious(0.02) benign(0.012) TCGA-50-6590-01 1 103412485 103412485 C T COL11A1 Missense_Mutation p.G1066S 0.14 unknown(0) TCGA-50-6590-01 1 107599509 107599509 G C PRMT6 Missense_Mutation p.E58Q 0.10 tolerated(0.1) possibly_damaging(0.804) TCGA-50-6590-01 1 107867256 107867256 C A NTNG1 Missense_Mutation p.T200K 0.10 tolerated(0.08) possibly_damaging(0.847) TCGA-50-6590-01 1 109968974 109968974 C G PSMA5 5'Flank 0.07 TCGA-50-6590-01 1 111146418 111146418 G T KCNA2 Silent p.G329G 0.15 TCGA-50-6590-01 1 111216069 111216069 T A KCNA3 Missense_Mutation p.I455L 0.14 tolerated(0.17) benign(0.086) TCGA-50-6590-01 1 111216070 111216070 G T KCNA3 Silent p.T454T 0.14 TCGA-50-6590-01 1 111216142 111216142 G A KCNA3 Silent p.S430S 0.08 TCGA-50-6590-01 1 111492511 111492511 C G LRIF1 Missense_Mutation p.E611Q 0.07 tolerated(0.37) benign(0.035) TCGA-50-6590-01 1 11292494 11292494 T A MTOR Missense_Mutation p.Q838L 0.19 tolerated(0.06) benign(0.104) TCGA-50-6590-01 1 115603136 115603136 T C TSPAN2 Missense_Mutation p.I98M 0.09 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 1 117303199 117303199 C T CD2 Silent p.C186C 0.12 TCGA-50-6590-01 1 118583391 118583391 C T SPAG17 Missense_Mutation p.G1043E 0.21 deleterious(0) probably_damaging(1) TCGA-50-6590-01 1 120547953 120547953 T A NOTCH2 Silent p.T138T 0.19 TCGA-50-6590-01 1 12779534 12779534 C T AADACL3 Nonsense_Mutation p.Q19* 0.06 TCGA-50-6590-01 1 148016460 148016460 C A NBPF14 Missense_Mutation p.R267I 0.05 deleterious(0.01) probably_damaging(0.976) TCGA-50-6590-01 1 148016461 148016461 C A NBPF14 Splice_Site p.X267_splice 0.05 TCGA-50-6590-01 1 148346594 148346594 G A NBPF20 Nonsense_Mutation p.Q55* 0.08 TCGA-50-6590-01 1 149857906 149857906 G C HIST2H2BE Missense_Mutation p.I95M 0.08 deleterious_low_confidence(0.01) probably_damaging(0.976) TCGA-50-6590-01 1 149895850 149895850 C A SF3B4 Missense_Mutation p.A324S 0.23 tolerated(0.08) unknown(0) TCGA-50-6590-01 1 150776582 150776582 C A CTSK Missense_Mutation p.G178V 0.10 deleterious(0.02) probably_damaging(0.915) TCGA-50-6590-01 1 151259784 151259784 C T ZNF687 Silent p.C339C 0.12 TCGA-50-6590-01 1 152129396 152129396 A G RPTN Missense_Mutation p.L60P 0.33 deleterious(0.01) probably_damaging(0.91) TCGA-50-6590-01 1 152277574 152277574 C T FLG Missense_Mutation p.G3263D 0.09 unknown(0) TCGA-50-6590-01 1 155449401 155449401 T A ASH1L Missense_Mutation p.Q1087L 0.33 deleterious_low_confidence(0) benign(0.364) TCGA-50-6590-01 1 155727002 155727002 T C GON4L Missense_Mutation p.E1789G 0.09 deleterious(0) possibly_damaging(0.607) TCGA-50-6590-01 1 156269023 156269023 C G VHLL 5'UTR 0.19 TCGA-50-6590-01 1 156628514 156628514 C A BCAN Missense_Mutation p.P873T 0.10 deleterious(0) possibly_damaging(0.835) TCGA-50-6590-01 1 157737387 157737387 T A FCRL2 Intron 0.06 TCGA-50-6590-01 1 158046019 158046019 G - KIRREL Frame_Shift_Del p.L58Wfs*73 0.32 TCGA-50-6590-01 1 158614185 158614185 A G SPTA1 Missense_Mutation p.M1399T 0.11 deleterious(0) benign(0.143) TCGA-50-6590-01 1 158670237 158670237 A T OR6K2 Missense_Mutation p.L69Q 0.25 deleterious(0) probably_damaging(0.96) TCGA-50-6590-01 1 158817535 158817535 G T MNDA Missense_Mutation p.K335N 0.21 deleterious(0) probably_damaging(0.965) TCGA-50-6590-01 1 159410333 159410333 A G OR10J1 Missense_Mutation p.Y262C 0.10 deleterious(0.01) possibly_damaging(0.739) TCGA-50-6590-01 1 160064700 160064700 G A IGSF8 Missense_Mutation p.T134I 0.17 tolerated(0.08) benign(0.309) TCGA-50-6590-01 1 160141450 160141450 T G ATP1A4 Missense_Mutation p.M586R 0.20 tolerated(0.28) possibly_damaging(0.583) TCGA-50-6590-01 1 160141452 160141452 G A ATP1A4 Missense_Mutation p.D587N 0.19 tolerated(0.14) benign(0.001) TCGA-50-6590-01 1 16255328 16255328 G C SPEN Missense_Mutation p.E865Q 0.13 possibly_damaging(0.464) TCGA-50-6590-01 1 16255445 16255445 G C SPEN Missense_Mutation p.D904H 0.14 possibly_damaging(0.606) TCGA-50-6590-01 1 16257830 16257830 C G SPEN Missense_Mutation p.Q1699E 0.15 benign(0.05) TCGA-50-6590-01 1 167083011 167083011 G T DUSP27 Missense_Mutation p.A59S 0.24 tolerated(0.07) benign(0.068) TCGA-50-6590-01 1 167663339 167663339 A T RCSD1 Missense_Mutation p.N92Y 0.08 deleterious(0) probably_damaging(0.994) TCGA-50-6590-01 1 170934323 170934323 C A MROH9 Nonsense_Mutation p.S136* 0.30 TCGA-50-6590-01 1 170965683 170965683 G A MROH9 Missense_Mutation p.C458Y 0.06 deleterious(0.01) probably_damaging(0.994) TCGA-50-6590-01 1 172558474 172558474 C T SUCO Missense_Mutation p.P745S 0.07 tolerated(0.89) benign(0.001) TCGA-50-6590-01 1 173010504 173010504 T A TNFSF18 3'UTR 0.26 TCGA-50-6590-01 1 173010824 173010824 A T TNFSF18 Missense_Mutation p.S95T 0.26 tolerated(0.06) benign(0.049) TCGA-50-6590-01 1 173470159 173470159 A T SLC9C2 3'UTR 0.52 TCGA-50-6590-01 1 173915621 173915621 C T RC3H1 Missense_Mutation p.G985E 0.06 deleterious_low_confidence(0.01) benign(0.26) TCGA-50-6590-01 1 175046880 175046880 T A TNN Missense_Mutation p.L109Q 0.16 deleterious(0) possibly_damaging(0.905) TCGA-50-6590-01 1 175956158 175956158 C T RFWD2 Missense_Mutation p.S685N 0.26 tolerated(0.13) benign(0.032) TCGA-50-6590-01 1 179033164 179033164 C T FAM20B Missense_Mutation p.P226L 0.28 deleterious(0) probably_damaging(0.995) TCGA-50-6590-01 1 179348612 179348612 T C AXDND1 Silent p.Y192Y 0.30 TCGA-50-6590-01 1 180166391 180166391 C T QSOX1 3'UTR 0.33 TCGA-50-6590-01 1 181707533 181707533 G A CACNA1E Missense_Mutation p.G1195S 0.07 deleterious(0.03) probably_damaging(0.992) TCGA-50-6590-01 1 181725136 181725136 G T CACNA1E Missense_Mutation p.G1345V 0.25 tolerated(0.06) probably_damaging(0.998) TCGA-50-6590-01 1 181726202 181726202 C G CACNA1E Missense_Mutation p.I1423M 0.07 deleterious(0) benign(0.308) TCGA-50-6590-01 1 182835642 182835642 G C DHX9 Missense_Mutation p.G466R 0.07 deleterious(0) probably_damaging(1) TCGA-50-6590-01 1 185931698 185931698 G T HMCN1 Missense_Mutation p.G626V 0.13 probably_damaging(0.999) TCGA-50-6590-01 1 186084074 186084074 C A HMCN1 Silent p.V3800V 0.08 TCGA-50-6590-01 1 192335236 192335236 A G RGS21 Silent p.K147K 0.06 TCGA-50-6590-01 1 192547448 192547448 C A RGS1 Missense_Mutation p.S126Y 0.31 deleterious(0) probably_damaging(0.914) TCGA-50-6590-01 1 196716452 196716452 A T CFH 3'UTR 0.10 TCGA-50-6590-01 1 197031079 197031079 G T F13B Missense_Mutation p.L96M 0.18 deleterious(0) probably_damaging(0.997) TCGA-50-6590-01 1 202464798 202464798 C T PPP1R12B Silent p.F812F 0.16 TCGA-50-6590-01 1 204095176 204095176 G C SOX13 Missense_Mutation p.D595H 0.12 deleterious(0.01) possibly_damaging(0.535) TCGA-50-6590-01 1 205116708 205116708 C T DSTYK Missense_Mutation p.R923K 0.31 tolerated(0.89) benign(0.001) TCGA-50-6590-01 1 205492400 205492400 C - CDK18 Frame_Shift_Del p.Q36Sfs*57 0.20 TCGA-50-6590-01 1 207640143 207640143 G T CR2 Missense_Mutation p.G111C 0.26 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 1 209796374 209796374 C T LAMB3 Missense_Mutation p.E837K 0.11 tolerated(0.29) benign(0.003) TCGA-50-6590-01 1 209933485 209933485 G C TRAF3IP3 Missense_Mutation p.R34P 0.27 deleterious(0.01) probably_damaging(0.969) TCGA-50-6590-01 1 210012330 210012330 G T DIEXF Missense_Mutation p.S380I 0.24 deleterious(0.05) benign(0.309) TCGA-50-6590-01 1 215747182 215747182 G T KCTD3 Missense_Mutation p.S46I 0.08 deleterious(0) probably_damaging(0.938) TCGA-50-6590-01 1 216051136 216051136 C A USH2A Missense_Mutation p.G2882V 0.27 probably_damaging(0.999) TCGA-50-6590-01 1 216051137 216051137 C A USH2A Nonsense_Mutation p.G2882* 0.27 TCGA-50-6590-01 1 216390789 216390789 C A USH2A Missense_Mutation p.D1033Y 0.21 probably_damaging(0.976) TCGA-50-6590-01 1 216420371 216420371 C G USH2A Missense_Mutation p.V789L 0.09 benign(0.004) TCGA-50-6590-01 1 216420442 216420442 T A USH2A Missense_Mutation p.Q765L 0.28 probably_damaging(1) TCGA-50-6590-01 1 220242743 220242743 G T BPNT1 Missense_Mutation p.T122N 0.08 deleterious(0) probably_damaging(1) TCGA-50-6590-01 1 222717515 222717515 G T HHIPL2 Missense_Mutation p.A113E 0.29 deleterious(0.02) probably_damaging(0.936) TCGA-50-6590-01 1 222920374 222920374 G T FAM177B Silent p.G64G 0.26 TCGA-50-6590-01 1 229567635 229567635 C A ACTA1 Missense_Mutation p.G275C 0.24 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-50-6590-01 1 230807271 230807271 G T COG2 Nonsense_Mutation p.E262* 0.29 TCGA-50-6590-01 1 235907394 235907394 G A LYST Missense_Mutation p.S2679L 0.14 tolerated(0.19) possibly_damaging(0.876) TCGA-50-6590-01 1 23689076 23689076 G C ZNF436 Missense_Mutation p.Q267E 0.06 tolerated(1) benign(0.258) TCGA-50-6590-01 1 236917279 236917279 C G ACTN2 Silent p.S624S 0.11 TCGA-50-6590-01 1 237666760 237666760 C A RYR2 Silent p.S856S 0.11 TCGA-50-6590-01 1 237780726 237780726 C T RYR2 Silent p.N1952N 0.27 TCGA-50-6590-01 1 237796971 237796971 C A RYR2 Missense_Mutation p.H2217N 0.23 probably_damaging(1) TCGA-50-6590-01 1 237886431 237886431 G T RYR2 Nonsense_Mutation p.E3520* 0.24 TCGA-50-6590-01 1 237947865 237947865 T G RYR2 Missense_Mutation p.S4285A 0.09 benign(0.041) TCGA-50-6590-01 1 238090295 238090295 C T RP11-193H5.1 RNA 0.08 TCGA-50-6590-01 1 23836552 23836552 C - E2F2 Frame_Shift_Del p.H379Tfs*22 0.22 TCGA-50-6590-01 1 240071724 240071724 G T CHRM3 Nonsense_Mutation p.E325* 0.30 TCGA-50-6590-01 1 240370908 240370908 C A FMN2 Silent p.L932L 0.31 TCGA-50-6590-01 1 240371084 240371084 C T FMN2 Missense_Mutation p.P991L 0.36 unknown(0) TCGA-50-6590-01 1 241031924 241031924 C T RGS7 Missense_Mutation p.S191N 0.12 deleterious(0) probably_damaging(0.971) TCGA-50-6590-01 1 243319538 243319538 C T CEP170 Missense_Mutation p.R1299Q 0.23 tolerated(0.37) possibly_damaging(0.638) TCGA-50-6590-01 1 247587920 247587920 C A NLRP3 Missense_Mutation p.A392D 0.23 deleterious(0) probably_damaging(0.998) TCGA-50-6590-01 1 247769356 247769356 C T OR2G3 Silent p.L157L 0.24 TCGA-50-6590-01 1 247978357 247978357 C A OR14A16 Missense_Mutation p.K225N 0.26 deleterious(0.01) benign(0.33) TCGA-50-6590-01 1 247978624 247978624 C T OR14A16 Silent p.R136R 0.22 TCGA-50-6590-01 1 248004658 248004658 G A OR11L1 Missense_Mutation p.L181F 0.14 tolerated(0.46) probably_damaging(0.94) TCGA-50-6590-01 1 248031161 248031161 C A TRIM58 Silent p.V254V 0.17 TCGA-50-6590-01 1 248031162 248031162 C A TRIM58 Missense_Mutation p.L255M 0.18 deleterious(0) probably_damaging(0.998) TCGA-50-6590-01 1 248308569 248308569 G T OR2M5 Missense_Mutation p.M40I 0.24 tolerated(0.5) benign(0.001) TCGA-50-6590-01 1 248402587 248402587 T A OR2M4 Silent p.A119A 0.25 TCGA-50-6590-01 1 248402589 248402589 A T OR2M4 Missense_Mutation p.Y120F 0.23 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 1 248487472 248487472 G T OR2M7 Silent p.T133T 0.18 TCGA-50-6590-01 1 248737461 248737461 A T OR2T34 Missense_Mutation p.Y200N 0.09 deleterious(0) probably_damaging(1) TCGA-50-6590-01 1 248789925 248789925 G T OR2T11 Silent p.R169R 0.16 TCGA-50-6590-01 1 248813773 248813773 C A OR2T27 Missense_Mutation p.R138L 0.20 tolerated(0.08) benign(0.326) TCGA-50-6590-01 1 25785240 25785240 C T TMEM57 Silent p.S337S 0.07 TCGA-50-6590-01 1 29069369 29069369 G T YTHDF2 Missense_Mutation p.S196I 0.13 tolerated(0.12) benign(0.194) TCGA-50-6590-01 1 32259389 32259389 C A SPOCD1 Missense_Mutation p.M831I 0.13 deleterious(0.04) benign(0.008) TCGA-50-6590-01 1 38281087 38281087 C T MTF1 Silent p.P661P 0.17 TCGA-50-6590-01 1 39812670 39812670 G A MACF1 Intron 0.11 TCGA-50-6590-01 1 41450572 41450572 C G CTPS1 Silent p.L82L 0.08 TCGA-50-6590-01 1 42047885 42047885 C T HIVEP3 Missense_Mutation p.E862K 0.11 probably_damaging(0.993) TCGA-50-6590-01 1 44437298 44437298 G T DPH2 Missense_Mutation p.A242S 0.15 tolerated(0.2) benign(0.102) TCGA-50-6590-01 1 46500535 46500535 T A MAST2 Silent p.R1398R 0.11 TCGA-50-6590-01 1 46500536 46500536 T A MAST2 Missense_Mutation p.S1399T 0.11 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-50-6590-01 1 46745230 46745230 C G LRRC41 Missense_Mutation p.E693Q 0.06 deleterious(0.03) possibly_damaging(0.607) TCGA-50-6590-01 1 46746159 46746159 C T LRRC41 Silent p.L610L 0.19 TCGA-50-6590-01 1 52703666 52703666 G A ZFYVE9 Missense_Mutation p.D193N 0.10 tolerated_low_confidence(0.07) benign(0.014) TCGA-50-6590-01 1 57341792 57341792 C G C8A Missense_Mutation p.S125C 0.15 deleterious(0) probably_damaging(1) TCGA-50-6590-01 1 6021958 6021958 T A NPHP4 Missense_Mutation p.K190M 0.12 deleterious(0) possibly_damaging(0.57) TCGA-50-6590-01 1 6206332 6206332 C A CHD5 Missense_Mutation p.R581L 0.07 deleterious(0.02) benign(0.167) TCGA-50-6590-01 1 65323402 65323402 C G JAK1 Silent p.L465L 0.08 TCGA-50-6590-01 1 66838395 66838395 C T PDE4B 3'UTR 0.26 TCGA-50-6590-01 1 70505161 70505161 A G LRRC7 Silent p.Q1180Q 0.18 TCGA-50-6590-01 1 74649349 74649349 G T LRRIQ3 Missense_Mutation p.T7K 0.09 deleterious(0.01) possibly_damaging(0.489) TCGA-50-6590-01 1 74664034 74664034 C G FPGT-TNNI3K Silent p.S37S 0.13 TCGA-50-6590-01 1 74664035 74664035 G A FPGT Missense_Mutation p.E25K 0.13 tolerated(0.69) benign(0.005) TCGA-50-6590-01 1 75037310 75037310 C A C1orf173 Missense_Mutation p.G1362C 0.06 deleterious(0) possibly_damaging(0.799) TCGA-50-6590-01 1 75037410 75037410 C T C1orf173 Silent p.K1328K 0.08 TCGA-50-6590-01 1 75072350 75072350 A T C1orf173 Missense_Mutation p.M475K 0.10 deleterious(0.01) benign(0.284) TCGA-50-6590-01 1 75072517 75072517 C A C1orf173 Missense_Mutation p.E419D 0.10 tolerated(0.09) possibly_damaging(0.664) TCGA-50-6590-01 1 75608953 75608953 G T LHX8 Silent p.V180V 0.23 TCGA-50-6590-01 1 76347000 76347000 G T MSH4 Silent p.V617V 0.14 TCGA-50-6590-01 1 77509952 77509952 C T ST6GALNAC5 Missense_Mutation p.R109W 0.08 possibly_damaging(0.713) TCGA-50-6590-01 1 79383618 79383618 C A ELTD1 Nonsense_Mutation p.G527* 0.06 TCGA-50-6590-01 1 79383619 79383619 C A ELTD1 Missense_Mutation p.K526N 0.06 deleterious(0) probably_damaging(0.994) TCGA-50-6590-01 1 82452676 82452676 A T LPHN2 Intron 0.09 TCGA-50-6590-01 1 86952403 86952403 G T CLCA1 Silent p.T383T 0.14 TCGA-50-6590-01 1 91859777 91859777 A G HFM1 Missense_Mutation p.Y123H 0.12 tolerated_low_confidence(0.11) benign(0.015) TCGA-50-6590-01 1 97235307 97235307 G C PTBP2 Missense_Mutation p.G55A 0.17 tolerated(0.54) benign(0) TCGA-50-6590-01 20 2377251 2377251 A T TGM6 Missense_Mutation p.Q175L 0.39 tolerated(0.66) benign(0.099) TCGA-50-6590-01 20 2413155 2413155 C T TGM6 Nonsense_Mutation p.Q663* 0.11 TCGA-50-6590-01 20 2464766 2464766 T C ZNF343 Missense_Mutation p.R281G 0.23 deleterious(0.01) benign(0.02) TCGA-50-6590-01 20 24959487 24959487 G C APMAP Missense_Mutation p.L82V 0.06 deleterious(0) possibly_damaging(0.899) TCGA-50-6590-01 20 2616632 2616632 G T TMC2 Silent p.L789L 0.29 TCGA-50-6590-01 20 2816230 2816230 G C PCED1A Missense_Mutation p.P415A 0.09 deleterious(0) probably_damaging(0.998) TCGA-50-6590-01 20 30070121 30070122 - G REM1 Frame_Shift_Ins p.S155Qfs*16 0.16 TCGA-50-6590-01 20 30136875 30136875 G T HM13 Silent p.L166L 0.24 TCGA-50-6590-01 20 3096005 3096024 GGAGCTGTCCCCTGGTCAGC - UBOX5 Frame_Shift_Del p.L449Afs*60 0.23 TCGA-50-6590-01 20 33577898 33577898 C A MYH7B Missense_Mutation p.Q659K 0.23 benign(0.069) TCGA-50-6590-01 20 33703449 33703449 G C EDEM2 Silent p.L508L 0.07 TCGA-50-6590-01 20 33703557 33703557 G C EDEM2 Missense_Mutation p.I472M 0.08 tolerated(0.08) probably_damaging(0.961) TCGA-50-6590-01 20 36470800 36470800 G C CTNNBL1 Missense_Mutation p.K457N 0.13 tolerated(0.39) benign(0.003) TCGA-50-6590-01 20 36888960 36888960 G T KIAA1755 5'UTR 0.19 TCGA-50-6590-01 20 3802911 3802911 C T AP5S1 Silent p.L49L 0.09 TCGA-50-6590-01 20 3898150 3898150 C G PANK2 Intron 0.09 TCGA-50-6590-01 20 40116400 40116400 C T CHD6 Missense_Mutation p.E636K 0.09 deleterious(0) probably_damaging(0.958) TCGA-50-6590-01 20 54824187 54824187 C G MC3R Missense_Mutation p.I96M 0.15 deleterious(0.05) probably_damaging(0.925) TCGA-50-6590-01 20 57429020 57429020 G A GNAS Missense_Mutation p.G234R 0.22 deleterious_low_confidence(0) unknown(0) TCGA-50-6590-01 20 5897521 5897521 G T CHGB Missense_Mutation p.S49I 0.07 deleterious(0) probably_damaging(0.917) TCGA-50-6590-01 20 5923323 5923323 G C TRMT6 Silent p.L259L 0.25 TCGA-50-6590-01 20 60427890 60427890 T A CDH4 Missense_Mutation p.N271K 0.23 deleterious(0.01) probably_damaging(1) TCGA-50-6590-01 20 60885533 60885533 G A LAMA5 Silent p.I3514I 0.18 TCGA-50-6590-01 20 60885534 60885534 A T LAMA5 Missense_Mutation p.I3514N 0.17 benign(0) TCGA-50-6590-01 20 60885969 60885969 G A LAMA5 Missense_Mutation p.R3424C 0.26 benign(0.2) TCGA-50-6590-01 20 60886057 60886057 G C LAMA5 Silent p.L3394L 0.11 TCGA-50-6590-01 20 61341142 61341142 G A NTSR1 Missense_Mutation p.A195T 0.30 tolerated(0.08) benign(0.038) TCGA-50-6590-01 20 61950514 61950514 C A COL20A1 Missense_Mutation p.A923D 0.14 tolerated(1) benign(0.003) TCGA-50-6590-01 20 62121927 62121927 C A EEF1A2 Missense_Mutation p.V312L 0.17 deleterious_low_confidence(0) benign(0.005) TCGA-50-6590-01 20 62198635 62198635 C A HELZ2 Silent p.L692L 0.33 TCGA-50-6590-01 20 870864 870864 C A ANGPT4 Nonsense_Mutation p.E153* 0.23 TCGA-50-6590-01 21 11039277 11039277 C G BAGE2 RNA 0.05 TCGA-50-6590-01 21 28212700 28212700 C A ADAMTS1 Silent p.V520V 0.38 TCGA-50-6590-01 21 31744160 31744160 G T KRTAP13-2 Silent p.S124S 0.23 TCGA-50-6590-01 21 31744161 31744161 G T KRTAP13-2 Missense_Mutation p.S124Y 0.23 deleterious(0.04) possibly_damaging(0.576) TCGA-50-6590-01 21 45217390 45217390 C A RRP1 Silent p.I170I 0.46 TCGA-50-6590-01 22 19118830 19118830 C T TSSK2 5'UTR 0.16 TCGA-50-6590-01 22 19127438 19127438 A G DGCR14 Missense_Mutation p.M167T 0.06 deleterious(0) probably_damaging(0.996) TCGA-50-6590-01 22 20302978 20302978 C T DGCR6L Missense_Mutation p.E132K 0.09 tolerated(0.16) probably_damaging(0.995) TCGA-50-6590-01 22 26294343 26294343 C A MYO18B Missense_Mutation p.H1580N 0.13 tolerated(0.05) benign(0.049) TCGA-50-6590-01 22 26423427 26423427 C T MYO18B Missense_Mutation p.P2496L 0.25 tolerated(0.23) benign(0.02) TCGA-50-6590-01 22 29445223 29445223 A G ZNRF3 Missense_Mutation p.S352G 0.16 tolerated(0.51) benign(0.002) TCGA-50-6590-01 22 29885826 29885826 C A NEFH Missense_Mutation p.P733T 0.13 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-50-6590-01 22 30688619 30688619 C T TBC1D10A Silent p.K431K 0.06 TCGA-50-6590-01 22 32097683 32097683 T C PRR14L Silent p.P2022P 0.14 TCGA-50-6590-01 22 32546309 32546309 C A C22orf42 Missense_Mutation p.E217D 0.11 deleterious_low_confidence(0) benign(0.388) TCGA-50-6590-01 22 35785929 35785929 C T HMOX1 Missense_Mutation p.R237C 0.11 deleterious(0) possibly_damaging(0.88) TCGA-50-6590-01 22 36054687 36054687 G A APOL6 Missense_Mutation p.E26K 0.10 deleterious(0.04) probably_damaging(0.914) TCGA-50-6590-01 22 37524342 37524342 C G IL2RB Missense_Mutation p.D484H 0.11 tolerated(0.1) probably_damaging(0.927) TCGA-50-6590-01 22 38468540 38468540 G A PICK1 Missense_Mutation p.E205K 0.10 tolerated(0.08) possibly_damaging(0.643) TCGA-50-6590-01 22 38864286 38864286 G C KDELR3 Missense_Mutation p.M16I 0.18 tolerated(1) benign(0.001) TCGA-50-6590-01 22 38875670 38875670 G A KDELR3 Missense_Mutation p.E89K 0.10 tolerated(0.17) benign(0.022) TCGA-50-6590-01 22 50906112 50906112 G C SBF1 Missense_Mutation p.T96R 0.17 tolerated(0.54) benign(0.096) TCGA-50-6590-01 2 100020963 100020963 G C REV1 Missense_Mutation p.Q997E 0.08 tolerated(0.59) benign(0.002) TCGA-50-6590-01 2 10188397 10188397 G T KLF11 Silent p.V311V 0.11 TCGA-50-6590-01 2 103003409 103003409 G C IL18R1 Missense_Mutation p.V300L 0.30 tolerated(0.84) benign(0.015) TCGA-50-6590-01 2 103013338 103013338 G T IL18R1 Nonsense_Mutation p.E540* 0.27 TCGA-50-6590-01 2 107040328 107040328 G T RGPD3 Nonsense_Mutation p.Y1365* 0.10 TCGA-50-6590-01 2 107446571 107446571 C A ST6GAL2 Missense_Mutation p.E423D 0.30 possibly_damaging(0.759) TCGA-50-6590-01 2 113088956 113088956 G T ZC3H6 Missense_Mutation p.G821C 0.17 tolerated(0.09) probably_damaging(0.969) TCGA-50-6590-01 2 113509933 113509933 C G CKAP2L Missense_Mutation p.E505Q 0.28 deleterious(0.04) possibly_damaging(0.477) TCGA-50-6590-01 2 121991727 121991727 C G TFCP2L1 Missense_Mutation p.E380Q 0.07 tolerated(0.69) probably_damaging(0.986) TCGA-50-6590-01 2 1263177 1263177 C T SNTG2 Silent p.T347T 0.12 TCGA-50-6590-01 2 128354111 128354111 C T MYO7B Silent p.V773V 0.41 TCGA-50-6590-01 2 128394410 128394410 G T MYO7B Missense_Mutation p.W2057C 0.05 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 2 128482706 128482706 C A WDR33 Missense_Mutation p.C312F 0.41 deleterious(0.01) unknown(0) TCGA-50-6590-01 2 132238277 132238277 C A TUBA3D Silent p.T337T 0.24 TCGA-50-6590-01 2 135848566 135848566 A G RAB3GAP1 Splice_Site p.X51_splice 0.07 TCGA-50-6590-01 2 136380227 136380227 C T R3HDM1 Missense_Mutation p.S141F 0.11 deleterious(0.01) probably_damaging(0.99) TCGA-50-6590-01 2 138722049 138722049 C G HNMT 5'UTR 0.04 TCGA-50-6590-01 2 140992364 140992364 T A LRP1B Silent p.L4550L 0.28 TCGA-50-6590-01 2 141299446 141299446 C G LRP1B Missense_Mutation p.R2430P 0.30 possibly_damaging(0.453) TCGA-50-6590-01 2 149247082 149247082 C T MBD5 Missense_Mutation p.P1061L 0.08 tolerated_low_confidence(0.35) unknown(0) TCGA-50-6590-01 2 157183351 157183351 T C NR4A2 Missense_Mutation p.M414V 0.06 tolerated(0.15) benign(0.33) TCGA-50-6590-01 2 160005759 160005759 C A TANC1 Silent p.T157T 0.28 TCGA-50-6590-01 2 160229598 160229598 G A BAZ2B Nonsense_Mutation p.Q1391* 0.30 TCGA-50-6590-01 2 160229604 160229604 G A BAZ2B Missense_Mutation p.L1389F 0.34 probably_damaging(0.999) TCGA-50-6590-01 2 160229657 160229657 G A BAZ2B Missense_Mutation p.S1371L 0.33 benign(0.041) TCGA-50-6590-01 2 160229661 160229661 G A BAZ2B Missense_Mutation p.H1370Y 0.32 benign(0.058) TCGA-50-6590-01 2 160807914 160807914 G C PLA2R1 Silent p.S1159S 0.11 TCGA-50-6590-01 2 163099430 163099430 G A FAP Missense_Mutation p.R27C 0.14 tolerated(0.12) benign(0.163) TCGA-50-6590-01 2 166859123 166859123 A T SCN1A Silent p.T1381T 0.22 TCGA-50-6590-01 2 16746923 16746923 C A FAM49A Missense_Mutation p.E61D 0.11 tolerated(0.06) benign(0.151) TCGA-50-6590-01 2 168099200 168099200 T A XIRP2 Missense_Mutation p.V433D 0.28 benign(0.286) TCGA-50-6590-01 2 168099600 168099600 G A XIRP2 Nonsense_Mutation p.W566* 0.24 TCGA-50-6590-01 2 168102985 168102985 C T XIRP2 Missense_Mutation p.L1695F 0.07 probably_damaging(0.919) TCGA-50-6590-01 2 169728007 169728007 C A SPC25 Missense_Mutation p.K203N 0.08 deleterious(0) benign(0.347) TCGA-50-6590-01 2 170031841 170031841 C G LRP2 Missense_Mutation p.E3544Q 0.07 probably_damaging(1) TCGA-50-6590-01 2 170031859 170031859 A T LRP2 Missense_Mutation p.C3538S 0.09 probably_damaging(1) TCGA-50-6590-01 2 170367047 170367047 A T KLHL41 Missense_Mutation p.K253N 0.05 deleterious(0.03) benign(0.008) TCGA-50-6590-01 2 170557703 170557703 C T PHOSPHO2 Silent p.F74F 0.10 TCGA-50-6590-01 2 170558124 170558124 C G PHOSPHO2 Missense_Mutation p.L215V 0.09 tolerated(0.41) benign(0.011) TCGA-50-6590-01 2 174131422 174131422 G T MLTK Missense_Mutation p.A783S 0.25 tolerated_low_confidence(0.37) benign(0.005) TCGA-50-6590-01 2 174232427 174232427 C G CDCA7 3'UTR 0.25 TCGA-50-6590-01 2 176957939 176957939 C T HOXD13 Silent p.C107C 0.40 TCGA-50-6590-01 2 178494168 178494168 G T PDE11A Silent p.A923A 0.27 TCGA-50-6590-01 2 178681583 178681583 G A PDE11A Silent p.S570S 0.26 TCGA-50-6590-01 2 179214117 179214117 G T OSBPL6 Splice_Site p.X410_splice 0.23 TCGA-50-6590-01 2 179399495 179399495 G C TTN Silent p.T33949T 0.07 TCGA-50-6590-01 2 179432396 179432396 C T TTN Missense_Mutation p.E26155K 0.07 TCGA-50-6590-01 2 179439537 179439537 C A TTN Missense_Mutation p.W23774C 0.09 TCGA-50-6590-01 2 179447086 179447086 C A TTN Nonsense_Mutation p.E22033* 0.16 TCGA-50-6590-01 2 179447730 179447730 A G TTN Missense_Mutation p.Y21934H 0.06 TCGA-50-6590-01 2 179450060 179450060 G T TTN Missense_Mutation p.L21471I 0.07 TCGA-50-6590-01 2 179454814 179454814 C G TTN Missense_Mutation p.K20546N 0.06 TCGA-50-6590-01 2 179459375 179459375 T A TTN Splice_Site p.X19283_splice 0.06 TCGA-50-6590-01 2 179472295 179472295 G T TTN Missense_Mutation p.T17707N 0.25 TCGA-50-6590-01 2 179552888 179552888 C T TTN Missense_Mutation p.R10754K 0.07 TCGA-50-6590-01 2 179577502 179577502 A T TTN Missense_Mutation p.S9084T 0.25 TCGA-50-6590-01 2 179586740 179586740 T G TTN Missense_Mutation p.K7550N 0.08 TCGA-50-6590-01 2 179587120 179587120 A T TTN Missense_Mutation p.L7465Q 0.09 TCGA-50-6590-01 2 179588665 179588665 A T TTN Missense_Mutation p.D7107E 0.20 TCGA-50-6590-01 2 179639722 179639722 G C TTN Missense_Mutation p.S2239C 0.13 TCGA-50-6590-01 2 179649066 179649066 C G TTN Missense_Mutation p.G836R 0.20 TCGA-50-6590-01 2 182388919 182388919 G A ITGA4 Missense_Mutation p.D731N 0.08 deleterious(0) probably_damaging(1) TCGA-50-6590-01 2 182542406 182542406 G C NEUROD1 3'UTR 0.09 TCGA-50-6590-01 2 187615999 187615999 G C FAM171B Missense_Mutation p.R288P 0.07 tolerated(0.2) benign(0.002) TCGA-50-6590-01 2 187626765 187626765 G A FAM171B Missense_Mutation p.G566R 0.17 deleterious(0.04) probably_damaging(1) TCGA-50-6590-01 2 187627596 187627596 G T FAM171B 3'UTR 0.16 TCGA-50-6590-01 2 189944715 189944715 G T COL5A2 Missense_Mutation p.P317T 0.27 benign(0.005) TCGA-50-6590-01 2 190682749 190682749 C G PMS1 Missense_Mutation p.T142S 0.09 deleterious(0.05) possibly_damaging(0.893) TCGA-50-6590-01 2 190927318 190927318 T A MSTN Missense_Mutation p.Q2L 0.17 tolerated_low_confidence(0.08) benign(0.006) TCGA-50-6590-01 2 197878319 197878319 C G HNRNPA3P15 5'Flank 0.09 TCGA-50-6590-01 2 202582828 202582828 C T ALS2 Missense_Mutation p.E1270K 0.10 deleterious(0.01) benign(0.017) TCGA-50-6590-01 2 207146608 207146608 G T ZDBF2 Missense_Mutation p.R12L 0.23 tolerated(0.25) possibly_damaging(0.569) TCGA-50-6590-01 2 21234160 21234160 C A APOB Missense_Mutation p.Q1860H 0.09 possibly_damaging(0.707) TCGA-50-6590-01 2 217724358 217724358 T A TNP1 3'UTR 0.10 TCGA-50-6590-01 2 225670017 225670017 C G DOCK10 Missense_Mutation p.L1319F 0.12 tolerated(0.21) probably_damaging(0.999) TCGA-50-6590-01 2 225729692 225729692 C A DOCK10 Missense_Mutation p.G457V 0.15 deleterious(0.05) possibly_damaging(0.517) TCGA-50-6590-01 2 227661713 227661713 G T IRS1 Missense_Mutation p.S581Y 0.13 deleterious(0.01) probably_damaging(0.991) TCGA-50-6590-01 2 228476285 228476285 G T C2orf83 Missense_Mutation p.P93H 0.15 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-50-6590-01 2 228882720 228882720 G T SPHKAP Missense_Mutation p.D950E 0.11 tolerated(1) benign(0.169) TCGA-50-6590-01 2 228884459 228884459 G T SPHKAP Missense_Mutation p.H371N 0.16 tolerated(0.57) benign(0.005) TCGA-50-6590-01 2 232104712 232104712 G T ARMC9 Silent p.R279R 0.19 TCGA-50-6590-01 2 242755785 242755785 C G NEU4 Missense_Mutation p.T48S 0.21 tolerated(0.14) benign(0.14) TCGA-50-6590-01 2 25851118 25851118 C A DTNB Missense_Mutation p.R95L 0.17 deleterious(0) probably_damaging(0.993) TCGA-50-6590-01 2 26204527 26204527 T A KIF3C Missense_Mutation p.Q87L 0.08 benign(0.003) TCGA-50-6590-01 2 26686933 26686933 G T OTOF Missense_Mutation p.L1668M 0.18 deleterious(0) probably_damaging(0.938) TCGA-50-6590-01 2 27805239 27805239 C T C2orf16 Missense_Mutation p.R1934C 0.08 deleterious_low_confidence(0) unknown(0) TCGA-50-6590-01 2 37041562 37041562 C - VIT 3'UTR 0.23 TCGA-50-6590-01 2 37406600 37406600 C A SULT6B1 Splice_Site p.X139_splice 0.11 TCGA-50-6590-01 2 39088257 39088257 T C DHX57 Missense_Mutation p.Y432C 0.09 deleterious(0) probably_damaging(0.95) TCGA-50-6590-01 2 40342413 40342413 A T SLC8A1 Missense_Mutation p.C968S 0.14 deleterious(0.02) probably_damaging(0.988) TCGA-50-6590-01 2 42836680 42836680 C G MTA3 Silent p.L91L 0.11 TCGA-50-6590-01 2 44571703 44571703 T A PREPL Missense_Mutation p.Y122F 0.19 deleterious(0) probably_damaging(0.992) TCGA-50-6590-01 2 49190148 49190148 C G FSHR Silent p.V604V 0.14 TCGA-50-6590-01 2 49295382 49295382 G A FSHR Missense_Mutation p.S67L 0.09 tolerated(0.13) benign(0.005) TCGA-50-6590-01 2 50280529 50280529 A T NRXN1 Silent p.T1376T 0.09 TCGA-50-6590-01 2 50464028 50464028 C A NRXN1 Missense_Mutation p.A1189S 0.15 tolerated(0.58) benign(0.011) TCGA-50-6590-01 2 56420064 56420064 G T CCDC85A Missense_Mutation p.E243D 0.26 tolerated(0.37) probably_damaging(0.986) TCGA-50-6590-01 2 72371192 72371192 G C CYP26B1 Missense_Mutation p.R119G 0.10 tolerated(0.17) benign(0.004) TCGA-50-6590-01 2 73160986 73160986 C A EMX1 Missense_Mutation p.S259Y 0.26 deleterious(0) probably_damaging(0.935) TCGA-50-6590-01 2 73339481 73339481 T A RAB11FIP5 Missense_Mutation p.H142L 0.37 deleterious(0.02) benign(0.345) TCGA-50-6590-01 2 80085237 80085237 G T CTNNA2 Missense_Mutation p.A133S 0.16 tolerated(0.25) benign(0.44) TCGA-50-6590-01 2 90139104 90139104 C T IGKV1D-16 5'UTR 0.10 TCGA-50-6590-01 2 97030231 97030231 G T NCAPH Missense_Mutation p.A534S 0.15 tolerated(0.72) benign(0.034) TCGA-50-6590-01 3 10084739 10084739 T C FANCD2 Silent p.I298I 0.24 TCGA-50-6590-01 3 10255175 10255175 G T IRAK2 Missense_Mutation p.C244F 0.30 deleterious(0.04) possibly_damaging(0.588) TCGA-50-6590-01 3 108304034 108304034 C T KIAA1524 Missense_Mutation p.R43Q 0.42 tolerated(0.44) benign(0.063) TCGA-50-6590-01 3 121980765 121980765 G T CASR Missense_Mutation p.A295S 0.19 deleterious(0.02) probably_damaging(0.984) TCGA-50-6590-01 3 12458631 12458631 T A PPARG Silent p.I416I 0.27 TCGA-50-6590-01 3 130289710 130289710 C A COL6A6 Missense_Mutation p.S817Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 3 130307991 130307991 G T COL6A6 Missense_Mutation p.G1395C 0.39 deleterious(0) probably_damaging(1) TCGA-50-6590-01 3 135913854 135913854 G C MSL2 Silent p.L34L 0.07 TCGA-50-6590-01 3 138374338 138374338 C T PIK3CB Missense_Mutation p.E1036K 0.37 deleterious(0.04) benign(0.208) TCGA-50-6590-01 3 140401979 140401979 C A TRIM42 Missense_Mutation p.S339R 0.32 tolerated(0.06) probably_damaging(0.918) TCGA-50-6590-01 3 142757789 142757789 G C U2SURP Missense_Mutation p.E791Q 0.62 tolerated(0.45) benign(0.173) TCGA-50-6590-01 3 152880648 152880648 C T RAP2B Silent p.L56L 0.28 TCGA-50-6590-01 3 164748573 164748573 C A SI Missense_Mutation p.R940I 0.33 deleterious(0) benign(0.008) TCGA-50-6590-01 3 164750353 164750353 G T SI Missense_Mutation p.P898Q 0.35 tolerated(0.45) benign(0.001) TCGA-50-6590-01 3 164905952 164905952 C A SLITRK3 Missense_Mutation p.R889S 0.31 tolerated(0.19) benign(0.018) TCGA-50-6590-01 3 165548502 165548502 G T BCHE Nonsense_Mutation p.S107* 0.40 TCGA-50-6590-01 3 167245694 167245694 C A WDR49 Missense_Mutation p.G488C 0.31 deleterious(0.01) probably_damaging(0.933) TCGA-50-6590-01 3 167254714 167254714 T A WDR49 Missense_Mutation p.Q281L 0.38 deleterious(0) possibly_damaging(0.784) TCGA-50-6590-01 3 167414840 167414840 G C PDCD10 Missense_Mutation p.N75K 0.45 deleterious(0.04) possibly_damaging(0.736) TCGA-50-6590-01 3 172025273 172025273 A T FNDC3B Silent p.S394S 0.31 TCGA-50-6590-01 3 178921542 178921542 A T PIK3CA Missense_Mutation p.T342S 0.30 tolerated(0.24) benign(0.126) TCGA-50-6590-01 3 179448420 179448420 G T USP13 Missense_Mutation p.G393C 0.33 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 3 179448421 179448421 G T USP13 Missense_Mutation p.G393V 0.33 deleterious(0) probably_damaging(0.995) TCGA-50-6590-01 3 183700635 183700635 C A ABCC5 Missense_Mutation p.R251L 0.36 deleterious(0.03) possibly_damaging(0.888) TCGA-50-6590-01 3 183888122 183888122 G T DVL3 Missense_Mutation p.G577V 0.29 deleterious(0) probably_damaging(0.988) TCGA-50-6590-01 3 183960451 183960451 C A ALG3 Missense_Mutation p.G390W 0.40 deleterious(0) probably_damaging(1) TCGA-50-6590-01 3 186370413 186370413 C A FETUB Missense_Mutation p.P381Q 0.45 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 3 186394866 186394866 C T HRG Missense_Mutation p.H258Y 0.17 deleterious(0.05) benign(0.009) TCGA-50-6590-01 3 187419769 187419769 G T RTP2 Missense_Mutation p.Q50K 0.26 tolerated(0.06) benign(0.017) TCGA-50-6590-01 3 188583987 188583987 G C LPP Splice_Site p.X471_splice 0.10 TCGA-50-6590-01 3 192053165 192053165 G T FGF12 Silent p.G133G 0.17 TCGA-50-6590-01 3 192078262 192078262 G T FGF12 Missense_Mutation p.P89T 0.29 deleterious(0) possibly_damaging(0.561) TCGA-50-6590-01 3 21462738 21462738 C T ZNF385D Missense_Mutation p.A386T 0.28 tolerated(1) benign(0) TCGA-50-6590-01 3 21478689 21478689 G T ZNF385D Missense_Mutation p.T149N 0.13 tolerated(0.34) benign(0.048) TCGA-50-6590-01 3 28454784 28454784 A G ZCWPW2 Silent p.E75E 0.30 TCGA-50-6590-01 3 3144499 3144499 G T IL5RA Missense_Mutation p.L30I 0.13 deleterious(0.02) possibly_damaging(0.593) TCGA-50-6590-01 3 32745455 32745455 G T CNOT10 Splice_Site p.X99_splice 0.18 TCGA-50-6590-01 3 39433348 39433348 G T SLC25A38 Missense_Mutation p.G154V 0.16 deleterious(0) probably_damaging(0.994) TCGA-50-6590-01 3 46716186 46716186 T A ALS2CL Missense_Mutation p.S767C 0.26 tolerated(0.18) benign(0.067) TCGA-50-6590-01 3 49138142 49138142 C A QARS Intron 0.16 TCGA-50-6590-01 3 49695595 49695595 C A BSN Missense_Mutation p.S2869Y 0.36 unknown(0) TCGA-50-6590-01 3 52822006 52822006 C G ITIH1 Missense_Mutation p.F643L 0.16 tolerated(0.36) benign(0.043) TCGA-50-6590-01 3 53694253 53694253 C T CACNA1D Silent p.L239L 0.34 TCGA-50-6590-01 3 53760933 53760933 G T CACNA1D Missense_Mutation p.V730L 0.24 deleterious(0.02) probably_damaging(0.994) TCGA-50-6590-01 3 53760942 53760942 G A CACNA1D Missense_Mutation p.D733N 0.06 tolerated(0.32) probably_damaging(0.998) TCGA-50-6590-01 3 56655658 56655658 C A CCDC66 3'UTR 0.06 TCGA-50-6590-01 3 74315790 74315790 C A CNTN3 Missense_Mutation p.R943M 0.24 deleterious(0) probably_damaging(0.99) TCGA-50-6590-01 3 74315791 74315791 T A CNTN3 Missense_Mutation p.R943W 0.21 deleterious(0.01) possibly_damaging(0.631) TCGA-50-6590-01 3 96706224 96706224 C T EPHA6 Silent p.Y167Y 0.04 TCGA-50-6590-01 3 97888240 97888240 G T OR5H15 Missense_Mutation p.G233C 0.32 deleterious(0.01) possibly_damaging(0.611) TCGA-50-6590-01 3 98512693 98512693 C G ST3GAL6 3'UTR 0.33 TCGA-50-6590-01 3 99568152 99568154 TTC - FILIP1L In_Frame_Del p.R789del 0.47 TCGA-50-6590-01 4 119952487 119952487 G T SYNPO2 Missense_Mutation p.A853S 0.23 tolerated(0.29) benign(0.029) TCGA-50-6590-01 4 126402805 126402805 T A FAT4 Missense_Mutation p.V4243E 0.27 benign(0.079) TCGA-50-6590-01 4 134073887 134073887 G C PCDH10 Missense_Mutation p.Q864H 0.22 tolerated(0.17) possibly_damaging(0.73) TCGA-50-6590-01 4 141789444 141789444 C A RNF150 Missense_Mutation p.D430Y 0.28 deleterious_low_confidence(0) possibly_damaging(0.87) TCGA-50-6590-01 4 143094812 143094812 C G INPP4B Missense_Mutation p.K444N 0.27 deleterious(0.03) benign(0.425) TCGA-50-6590-01 4 147215233 147215233 G A SLC10A7 Silent p.Y190Y 0.30 TCGA-50-6590-01 4 152204272 152204272 G C PRSS48 Missense_Mutation p.R162T 0.28 tolerated(0.57) benign(0) TCGA-50-6590-01 4 164246587 164246587 C A NPY1R Silent p.R341R 0.28 TCGA-50-6590-01 4 16513703 16513703 G T LDB2 Missense_Mutation p.Q214K 0.21 deleterious(0.03) possibly_damaging(0.836) TCGA-50-6590-01 4 166795203 166795203 T C TLL1 Silent p.D49D 0.27 TCGA-50-6590-01 4 169362572 169362572 C A DDX60L Missense_Mutation p.V404F 0.25 deleterious(0.01) possibly_damaging(0.786) TCGA-50-6590-01 4 177608644 177608644 C T VEGFC Missense_Mutation p.G281E 0.12 deleterious(0) probably_damaging(1) TCGA-50-6590-01 4 185940984 185940984 G T HELT Silent p.R157R 0.20 TCGA-50-6590-01 4 20619206 20619206 G T SLIT2 Missense_Mutation p.R1427S 0.36 tolerated(0.17) benign(0.432) TCGA-50-6590-01 4 23815726 23815726 G A PPARGC1A Silent p.A460A 0.21 TCGA-50-6590-01 4 23815727 23815727 G T PPARGC1A Missense_Mutation p.A460D 0.21 tolerated(0.07) possibly_damaging(0.488) TCGA-50-6590-01 4 39875953 39875953 C A PDS5A Missense_Mutation p.A745S 0.18 tolerated(0.08) benign(0.077) TCGA-50-6590-01 4 40439911 40439911 C A RBM47 Missense_Mutation p.G334C 0.16 deleterious(0.04) benign(0.005) TCGA-50-6590-01 4 40936666 40936666 T A APBB2 Missense_Mutation p.E386D 0.16 deleterious(0.03) possibly_damaging(0.899) TCGA-50-6590-01 4 44176975 44176975 G T KCTD8 Missense_Mutation p.S418R 0.21 tolerated(0.24) probably_damaging(0.969) TCGA-50-6590-01 4 49040160 49040160 G T CWH43 Missense_Mutation p.R589I 0.21 deleterious(0) probably_damaging(0.998) TCGA-50-6590-01 4 55971000 55971000 G T KDR Silent p.P599P 0.60 TCGA-50-6590-01 4 55976850 55976850 G T KDR Nonsense_Mutation p.Y354* 0.52 TCGA-50-6590-01 4 57181085 57181085 G C KIAA1211 Missense_Mutation p.G473R 0.07 deleterious(0.04) probably_damaging(0.979) TCGA-50-6590-01 4 62598884 62598884 G A LPHN3 Silent p.E269E 0.54 TCGA-50-6590-01 4 62910216 62910216 G C LPHN3 Missense_Mutation p.E1187Q 0.85 deleterious(0) probably_damaging(0.995) TCGA-50-6590-01 4 69332383 69332383 G C TMPRSS11E Missense_Mutation p.L57F 0.24 tolerated(1) probably_damaging(1) TCGA-50-6590-01 4 69343154 69343154 G T TMPRSS11E Missense_Mutation p.G259C 0.25 deleterious(0.04) probably_damaging(0.961) TCGA-50-6590-01 4 70359449 70359449 C A UGT2B4 Nonsense_Mutation p.G278* 0.12 TCGA-50-6590-01 4 71063865 71063865 C T ODAM Silent p.G122G 0.13 TCGA-50-6590-01 4 71202002 71202002 C A CABS1 3'UTR 0.44 TCGA-50-6590-01 4 72618364 72618364 C G GC Silent p.L441L 0.13 TCGA-50-6590-01 4 728712 728712 G A PCGF3 Intron 0.16 TCGA-50-6590-01 4 73956491 73956491 G A ANKRD17 Missense_Mutation p.S2285L 0.10 benign(0.017) TCGA-50-6590-01 4 76731607 76731607 G T USO1 Missense_Mutation p.G842V 0.19 tolerated(0.07) benign(0.007) TCGA-50-6590-01 4 76924763 76924763 C G CXCL9 Missense_Mutation p.K122N 0.21 deleterious(0.01) unknown(0) TCGA-50-6590-01 4 77917577 77917577 G A SEPT11 Splice_Site p.X10_splice 0.14 TCGA-50-6590-01 4 79297024 79297024 A G FRAS1 Missense_Mutation p.T1095A 0.11 benign(0.009) TCGA-50-6590-01 4 83719607 83719607 C A SCD5 Missense_Mutation p.E28D 0.33 tolerated(0.54) benign(0.008) TCGA-50-6590-01 4 860764 860764 C G GAK Missense_Mutation p.R951T 0.14 tolerated(0.53) benign(0.001) TCGA-50-6590-01 4 87680174 87680174 A G PTPN13 Silent p.A1167A 0.14 TCGA-50-6590-01 4 90647673 90647673 G C SNCA 3'UTR 0.25 TCGA-50-6590-01 4 90856447 90856447 G C MMRN1 Missense_Mutation p.S539T 0.22 tolerated(0.31) benign(0.017) TCGA-50-6590-01 4 90857244 90857244 A C MMRN1 Missense_Mutation p.T805P 0.19 deleterious(0.03) benign(0.065) TCGA-50-6590-01 5 109051935 109051935 T C MAN2A1 Missense_Mutation p.F169L 0.22 deleterious(0.01) possibly_damaging(0.731) TCGA-50-6590-01 5 109065175 109065175 G T MAN2A1 Missense_Mutation p.W223L 0.16 deleterious(0) probably_damaging(1) TCGA-50-6590-01 5 112769535 112769535 T C TSSK1B Silent p.Q334Q 0.12 TCGA-50-6590-01 5 113740528 113740528 G C KCNN2 Missense_Mutation p.A326P 0.27 tolerated(0.06) probably_damaging(0.989) TCGA-50-6590-01 5 118485675 118485675 G T DMXL1 Missense_Mutation p.D1385Y 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-50-6590-01 5 1208874 1208874 C T SLC6A19 Silent p.I72I 0.38 TCGA-50-6590-01 5 121187928 121187928 G T FTMT Silent p.A90A 0.24 TCGA-50-6590-01 5 1240700 1240700 C A SLC6A18 Silent p.S300S 0.38 TCGA-50-6590-01 5 129520882 129520882 A G CHSY3 Missense_Mutation p.K683E 0.15 tolerated(0.49) benign(0.063) TCGA-50-6590-01 5 135692735 135692735 A G TRPC7 Missense_Mutation p.I114T 0.22 deleterious(0) probably_damaging(1) TCGA-50-6590-01 5 137271488 137271488 G C PKD2L2 Missense_Mutation p.E558D 0.15 tolerated(0.11) benign(0.392) TCGA-50-6590-01 5 139494510 139494510 G T PURA Missense_Mutation p.E248D 0.25 deleterious(0) probably_damaging(0.997) TCGA-50-6590-01 5 140188385 140188385 G A PCDHA4 Missense_Mutation p.R538H 0.29 deleterious_low_confidence(0.01) benign(0.087) TCGA-50-6590-01 5 140209566 140209566 G T PCDHA6 Missense_Mutation p.E630D 0.32 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-50-6590-01 5 140262628 140262628 A C PCDHA13 Missense_Mutation p.T259P 0.21 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-50-6590-01 5 140515534 140515534 G T PCDHB5 Missense_Mutation p.S173I 0.25 deleterious_low_confidence(0.02) benign(0.115) TCGA-50-6590-01 5 140515984 140515984 G C PCDHB5 Missense_Mutation p.G323A 0.16 tolerated_low_confidence(0.06) benign(0.29) TCGA-50-6590-01 5 140564055 140564055 G T PCDHB16 Missense_Mutation p.V641L 0.21 tolerated_low_confidence(1) benign(0.002) TCGA-50-6590-01 5 140723724 140723724 G T PCDHGA3 Missense_Mutation p.G42C 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-50-6590-01 5 140737040 140737040 C - PCDHGA4 Frame_Shift_Del p.L759Sfs*10 0.29 TCGA-50-6590-01 5 145894570 145894570 G T GPR151 Silent p.S369S 0.21 TCGA-50-6590-01 5 148563037 148563037 C A ABLIM3 Nonsense_Mutation p.Y12* 0.09 TCGA-50-6590-01 5 151231016 151231016 G T GLRA1 Missense_Mutation p.L283I 0.30 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 5 153077664 153077664 G T GRIA1 Missense_Mutation p.G409C 0.17 deleterious(0.01) possibly_damaging(0.839) TCGA-50-6590-01 5 154173492 154173492 G T LARP1 Missense_Mutation p.R257L 0.12 tolerated(0.13) probably_damaging(0.999) TCGA-50-6590-01 5 154394127 154394127 G T KIF4B Silent p.L236L 0.16 TCGA-50-6590-01 5 156671325 156671325 C - ITK Frame_Shift_Del p.I431Sfs*73 0.26 TCGA-50-6590-01 5 159640816 159640816 A T FABP6 Missense_Mutation p.H42L 0.08 deleterious_low_confidence(0.01) benign(0.002) TCGA-50-6590-01 5 169805970 169805970 T A KCNMB1 Missense_Mutation p.Y105F 0.17 deleterious(0.04) probably_damaging(0.989) TCGA-50-6590-01 5 176301472 176301472 C A UNC5A Missense_Mutation p.T428N 0.28 tolerated(0.22) benign(0.087) TCGA-50-6590-01 5 23522881 23522881 G A PRDM9 Missense_Mutation p.G257R 0.24 deleterious(0) possibly_damaging(0.824) TCGA-50-6590-01 5 24487965 24487965 G C CDH10 Missense_Mutation p.P725R 0.06 deleterious(0.04) probably_damaging(0.997) TCGA-50-6590-01 5 33658341 33658341 C T ADAMTS12 Missense_Mutation p.E380K 0.37 deleterious(0) probably_damaging(1) TCGA-50-6590-01 5 39202772 39202772 G A FYB Silent p.S107S 0.28 TCGA-50-6590-01 5 41058230 41058230 G T MROH2B Missense_Mutation p.L231M 0.43 tolerated(0.21) benign(0.038) TCGA-50-6590-01 5 43280085 43280085 G T NIM1K Nonsense_Mutation p.E189* 0.11 TCGA-50-6590-01 5 82836667 82836667 C A VCAN Missense_Mutation p.D2615E 0.18 tolerated(0.38) benign(0.004) TCGA-50-6590-01 5 9197405 9197406 - A SEMA5A Frame_Shift_Ins p.A315Cfs*70 0.32 TCGA-50-6590-01 6 100841699 100841699 T G SIM1 Missense_Mutation p.T412P 0.26 deleterious(0.02) probably_damaging(0.99) TCGA-50-6590-01 6 10404933 10404933 G C TFAP2A Missense_Mutation p.S191C 0.11 tolerated(0.07) possibly_damaging(0.502) TCGA-50-6590-01 6 116972825 116972825 C A ZUFSP Missense_Mutation p.G409V 0.12 deleterious(0) probably_damaging(0.993) TCGA-50-6590-01 6 123377080 123377080 G A CLVS2 Missense_Mutation p.E269K 0.16 tolerated(0.23) benign(0.097) TCGA-50-6590-01 6 123786080 123786080 C T TRDN Missense_Mutation p.R301K 0.15 tolerated_low_confidence(0.07) benign(0.038) TCGA-50-6590-01 6 130762817 130762817 C A TMEM200A Missense_Mutation p.P417Q 0.19 tolerated(0.13) probably_damaging(0.963) TCGA-50-6590-01 6 130762884 130762884 G T TMEM200A Silent p.P439P 0.15 TCGA-50-6590-01 6 132892374 132892374 C A TAAR6 Missense_Mutation p.A305D 0.06 deleterious(0) probably_damaging(0.952) TCGA-50-6590-01 6 132938716 132938716 C A TAAR2 Missense_Mutation p.G210V 0.15 deleterious(0.02) probably_damaging(0.977) TCGA-50-6590-01 6 134350242 134350242 T C SLC2A12 Missense_Mutation p.R241G 0.13 deleterious(0) probably_damaging(0.995) TCGA-50-6590-01 6 136494944 136494944 G T PDE7B Missense_Mutation p.V241L 0.11 deleterious(0.04) probably_damaging(0.994) TCGA-50-6590-01 6 139106455 139106455 G T CCDC28A Missense_Mutation p.E228D 0.08 tolerated(0.16) possibly_damaging(0.454) TCGA-50-6590-01 6 139167684 139167684 T C ECT2L Missense_Mutation p.I258T 0.09 tolerated(0.12) benign(0.075) TCGA-50-6590-01 6 146256253 146256253 G A SHPRH Missense_Mutation p.S927F 0.13 deleterious(0) probably_damaging(0.988) TCGA-50-6590-01 6 146480657 146480657 G A GRM1 Missense_Mutation p.E292K 0.20 deleterious(0) probably_damaging(0.936) TCGA-50-6590-01 6 150001319 150001319 T C LATS1 Missense_Mutation p.N762S 0.11 tolerated(0.2) probably_damaging(0.999) TCGA-50-6590-01 6 150285224 150285224 C T ULBP1 Silent p.L13L 0.16 TCGA-50-6590-01 6 151121977 151121977 G C PLEKHG1 Missense_Mutation p.R251P 0.08 deleterious(0) probably_damaging(1) TCGA-50-6590-01 6 15501370 15501370 G T JARID2 Missense_Mutation p.E726D 0.09 tolerated(0.08) benign(0.071) TCGA-50-6590-01 6 157488201 157488201 G C ARID1B Missense_Mutation p.Q969H 0.10 probably_damaging(0.926) TCGA-50-6590-01 6 159457709 159457709 G T TAGAP Nonsense_Mutation p.S449* 0.09 TCGA-50-6590-01 6 161653134 161653134 G A AGPAT4 Missense_Mutation p.L38F 0.13 deleterious(0.04) possibly_damaging(0.747) TCGA-50-6590-01 6 165715075 165715075 C G C6orf118 Missense_Mutation p.E246Q 0.13 tolerated(0.06) possibly_damaging(0.903) TCGA-50-6590-01 6 25851096 25851096 C A SLC17A3 Missense_Mutation p.G241V 0.16 deleterious(0) probably_damaging(0.997) TCGA-50-6590-01 6 26197400 26197400 G C HIST1H3D Missense_Mutation p.R27G 0.05 deleterious_low_confidence(0.01) benign(0.004) TCGA-50-6590-01 6 26217622 26217622 G C HIST1H2AE 3'UTR 0.12 TCGA-50-6590-01 6 26509123 26509123 C G BTN1A1 Silent p.S434S 0.11 TCGA-50-6590-01 6 26598587 26598587 C G ABT1 Missense_Mutation p.A178G 0.08 deleterious(0.01) probably_damaging(1) TCGA-50-6590-01 6 27925657 27925657 C A OR2B6 Silent p.L213L 0.25 TCGA-50-6590-01 6 28254867 28254867 C T PGBD1 Silent p.P188P 0.10 TCGA-50-6590-01 6 28541542 28541542 A T SCAND3 Missense_Mutation p.S708R 0.36 tolerated_low_confidence(0.15) benign(0.002) TCGA-50-6590-01 6 29054630 29054630 A G OR2B3 Silent p.Y132Y 0.35 TCGA-50-6590-01 6 29974434 29974434 G C ZNRD1-AS1 Intron 0.16 TCGA-50-6590-01 6 30672204 30672204 G A MDC1 Nonsense_Mutation p.Q1586* 0.30 TCGA-50-6590-01 6 31734330 31734330 G C VWA7 Missense_Mutation p.F698L 0.11 deleterious(0.03) benign(0.074) TCGA-50-6590-01 6 32035474 32035474 G T TNXB Silent p.R2170R 0.31 TCGA-50-6590-01 6 32609933 32609933 C T HLA-DQA1 Silent p.F172F 0.07 TCGA-50-6590-01 6 37281631 37281631 G A TBC1D22B Missense_Mutation p.V377M 0.29 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 6 37631870 37631870 G A MDGA1 Missense_Mutation p.A27V 0.09 tolerated(0.94) possibly_damaging(0.535) TCGA-50-6590-01 6 38747767 38747767 C T DNAH8 Silent p.L472L 0.12 TCGA-50-6590-01 6 39286895 39286895 G T KCNK16 Silent p.A76A 0.22 TCGA-50-6590-01 6 41011324 41011324 C T TSPO2 Silent p.L68L 0.14 TCGA-50-6590-01 6 41168740 41168740 G T TREML2 Missense_Mutation p.P3T 0.19 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-50-6590-01 6 41874858 41874858 G A MED20 Silent p.F197F 0.23 TCGA-50-6590-01 6 44148729 44148729 A C CAPN11 Missense_Mutation p.M622L 0.32 tolerated(0.48) benign(0.002) TCGA-50-6590-01 6 46135616 46135616 C G ENPP5 Missense_Mutation p.Q128H 0.11 deleterious(0) probably_damaging(1) TCGA-50-6590-01 6 46680036 46680036 T C PLA2G7 Missense_Mutation p.H170R 0.08 tolerated(0.69) benign(0.109) TCGA-50-6590-01 6 46800982 46800982 G T MEP1A Missense_Mutation p.R439L 0.27 deleterious(0) probably_damaging(0.958) TCGA-50-6590-01 6 47682166 47682166 G T GPR115 Silent p.S395S 0.17 TCGA-50-6590-01 6 47776036 47776036 C A OPN5 Nonsense_Mutation p.Y301* 0.26 TCGA-50-6590-01 6 49409663 49409663 T A MUT Silent p.T566T 0.31 TCGA-50-6590-01 6 49665594 49665594 T C CRISP2 Missense_Mutation p.Y165C 0.30 deleterious(0) probably_damaging(0.998) TCGA-50-6590-01 6 51524450 51524450 A C PKHD1 Missense_Mutation p.S3492A 0.07 tolerated(0.08) benign(0.11) TCGA-50-6590-01 6 51938335 51938335 T C PKHD1 Silent p.K151K 0.06 TCGA-50-6590-01 6 52013774 52013774 C T MIR133B RNA 0.41 TCGA-50-6590-01 6 52400608 52400608 G A TRAM2 Nonsense_Mutation p.Q53* 0.20 TCGA-50-6590-01 6 54095709 54095709 C A MLIP Nonsense_Mutation p.C437* 0.26 TCGA-50-6590-01 6 55119932 55119932 A G HCRTR2 Splice_Site p.X135_splice 0.31 TCGA-50-6590-01 6 55216093 55216093 G T GFRAL Missense_Mutation p.C138F 0.27 deleterious(0) probably_damaging(1) TCGA-50-6590-01 6 6145984 6145984 G T F13A1 Silent p.T689T 0.30 TCGA-50-6590-01 6 69703696 69703696 G A BAI3 Missense_Mutation p.A591T 0.09 tolerated(0.07) possibly_damaging(0.843) TCGA-50-6590-01 6 70049262 70049262 C T BAI3 Silent p.L1109L 0.09 TCGA-50-6590-01 6 70926771 70926771 A T COL9A1 Silent p.P865P 0.14 TCGA-50-6590-01 6 70961820 70961820 C T COL9A1 Intron 0.10 TCGA-50-6590-01 6 71603888 71603888 C G B3GAT2 Missense_Mutation p.V227L 0.10 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 6 80750341 80750341 G C TTK Missense_Mutation p.G804A 0.09 tolerated(0.58) benign(0.045) TCGA-50-6590-01 6 90466040 90466040 C T MDN1 Silent p.L924L 0.17 TCGA-50-6590-01 6 97058521 97058521 G A FHL5 Missense_Mutation p.R193K 0.09 tolerated(1) benign(0.005) TCGA-50-6590-01 7 100350635 100350635 C A ZAN Silent p.P969P 0.24 TCGA-50-6590-01 7 100681897 100681897 A C MUC17 Silent p.T2400T 0.25 TCGA-50-6590-01 7 103828716 103828716 T C ORC5 Missense_Mutation p.K223E 0.30 tolerated(0.16) benign(0.218) TCGA-50-6590-01 7 107756607 107756607 C A LAMB4 Splice_Site p.X12_splice 0.22 TCGA-50-6590-01 7 108524580 108524580 C G C7orf66 Missense_Mutation p.V4L 0.34 tolerated_low_confidence(0.07) possibly_damaging(0.621) TCGA-50-6590-01 7 11068308 11068308 G T PHF14 Nonsense_Mutation p.E440* 0.16 TCGA-50-6590-01 7 11485953 11485953 T C THSD7A Splice_Site p.X934_splice 0.20 TCGA-50-6590-01 7 117424334 117424334 A T CTTNBP2 Nonsense_Mutation p.L748* 0.14 TCGA-50-6590-01 7 121652668 121652668 G A PTPRZ1 Missense_Mutation p.D1190N 0.06 tolerated_low_confidence(0.09) benign(0.196) TCGA-50-6590-01 7 121698978 121698978 C A PTPRZ1 Missense_Mutation p.P2218H 0.16 deleterious(0) probably_damaging(0.998) TCGA-50-6590-01 7 121769442 121769442 C A AASS Missense_Mutation p.M120I 0.25 deleterious(0) probably_damaging(0.991) TCGA-50-6590-01 7 122261607 122261607 T C CADPS2 Silent p.A344A 0.23 TCGA-50-6590-01 7 123594546 123594546 T A SPAM1 Missense_Mutation p.F308I 0.21 deleterious(0) probably_damaging(0.982) TCGA-50-6590-01 7 128850377 128850377 G T SMO Missense_Mutation p.R547L 0.15 deleterious(0) possibly_damaging(0.878) TCGA-50-6590-01 7 130353959 130353959 T G TSGA13 Silent p.A241A 0.19 TCGA-50-6590-01 7 133749297 133749297 T A EXOC4 3'UTR 0.19 TCGA-50-6590-01 7 134617818 134617818 C A CALD1 Missense_Mutation p.L100M 0.23 tolerated(0.12) unknown(0) TCGA-50-6590-01 7 136587922 136587922 T A CHRM2 Intron 0.17 TCGA-50-6590-01 7 139833402 139833402 G A KDM7A Missense_Mutation p.S112F 0.21 tolerated(0.12) possibly_damaging(0.493) TCGA-50-6590-01 7 140048468 140048468 C T SLC37A3 Missense_Mutation p.A328T 0.22 deleterious(0) probably_damaging(0.973) TCGA-50-6590-01 7 140287523 140287523 G T DENND2A Missense_Mutation p.D351E 0.24 tolerated(0.61) possibly_damaging(0.473) TCGA-50-6590-01 7 141752684 141752684 C T MGAM Missense_Mutation p.S1020F 0.21 tolerated(0.06) benign(0.007) TCGA-50-6590-01 7 141768474 141768474 C T MGAM Intron 0.11 TCGA-50-6590-01 7 141955393 141955393 G A PRSS58 Silent p.H47H 0.14 TCGA-50-6590-01 7 142013488 142013488 G T TRBV4-1 Silent p.%3D 0.19 TCGA-50-6590-01 7 142149344 142149344 C A TRBV5-5 Missense_Mutation p.G17C 0.17 deleterious(0) probably_damaging(0.998) TCGA-50-6590-01 7 142180926 142180926 C T TRBV6-5 Missense_Mutation p.A9T 0.19 deleterious(0.01) benign(0.002) TCGA-50-6590-01 7 142197981 142197981 C A TRBV11-2 RNA 0.17 TCGA-50-6590-01 7 142561083 142561083 A T EPHB6 Missense_Mutation p.E33V 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-50-6590-01 7 142564021 142564021 G T EPHB6 Missense_Mutation p.S470I 0.30 deleterious(0) probably_damaging(1) TCGA-50-6590-01 7 142612498 142612498 C A TRPV5 Missense_Mutation p.G422V 0.11 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 7 143657039 143657039 A T OR2F1 5'UTR 0.18 TCGA-50-6590-01 7 143657207 143657207 G T OR2F1 Silent p.L48L 0.11 TCGA-50-6590-01 7 1476417 1476417 C A MICALL2 Missense_Mutation p.R851L 0.18 deleterious(0) probably_damaging(1) TCGA-50-6590-01 7 14880857 14880857 C G DGKB Missense_Mutation p.S11T 0.23 tolerated(0.34) benign(0.008) TCGA-50-6590-01 7 149129541 149129541 C T ZNF777 Missense_Mutation p.G608R 0.25 tolerated(0.24) benign(0.123) TCGA-50-6590-01 7 149174026 149174026 T A ZNF746 Silent p.A275A 0.08 TCGA-50-6590-01 7 149523230 149523230 C A SSPO RNA 0.18 TCGA-50-6590-01 7 1538937 1538937 C G INTS1 Missense_Mutation p.A302P 0.16 tolerated(0.09) possibly_damaging(0.469) TCGA-50-6590-01 7 158552764 158552764 C G ESYT2 Silent p.A484A 0.06 TCGA-50-6590-01 7 20198880 20198880 T G MACC1 Missense_Mutation p.K368N 0.21 deleterious(0) possibly_damaging(0.791) TCGA-50-6590-01 7 20431053 20431053 G T ITGB8 Nonsense_Mutation p.E330* 0.18 TCGA-50-6590-01 7 21516849 21516849 G A SP4 Missense_Mutation p.D611N 0.17 deleterious(0) benign(0.156) TCGA-50-6590-01 7 21628134 21628134 A T DNAH11 Missense_Mutation p.E618V 0.20 benign(0.049) TCGA-50-6590-01 7 21789412 21789412 G T DNAH11 Silent p.L2937L 0.13 TCGA-50-6590-01 7 23145690 23145690 G C KLHL7 Missense_Mutation p.E15D 0.21 tolerated_low_confidence(0.43) benign(0.217) TCGA-50-6590-01 7 2406159 2406159 G A EIF3B Splice_Site p.X430_splice 0.23 TCGA-50-6590-01 7 24892206 24892206 C T OSBPL3 Missense_Mutation p.E359K 0.08 deleterious(0) benign(0.26) TCGA-50-6590-01 7 30791821 30791821 G T INMT Missense_Mutation p.D19Y 0.21 deleterious(0.01) probably_damaging(0.915) TCGA-50-6590-01 7 31746992 31746992 C T PPP1R17 3'UTR 0.50 TCGA-50-6590-01 7 31890348 31890348 A T PDE1C Missense_Mutation p.L313Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-50-6590-01 7 36657948 36657948 C A AOAH Missense_Mutation p.V236F 0.16 deleterious(0.04) possibly_damaging(0.495) TCGA-50-6590-01 7 38424457 38424457 C G AMPH Missense_Mutation p.G684R 0.23 deleterious(0) probably_damaging(1) TCGA-50-6590-01 7 38725230 38725230 A G FAM183B Missense_Mutation p.W126R 0.17 deleterious(0.03) probably_damaging(0.987) TCGA-50-6590-01 7 39504268 39504268 C G POU6F2 Missense_Mutation p.L687V 0.19 deleterious_low_confidence(0) unknown(0) TCGA-50-6590-01 7 41730010 41730010 G T INHBA Silent p.I173I 0.18 TCGA-50-6590-01 7 4285325 4285325 G T SDK1 Missense_Mutation p.S2090I 0.25 deleterious(0) probably_damaging(0.914) TCGA-50-6590-01 7 44802952 44802952 C - ZMIZ2 Frame_Shift_Del p.I602Sfs*60 0.23 TCGA-50-6590-01 7 47408169 47408169 T A TNS3 Missense_Mutation p.T692S 0.13 tolerated(0.07) possibly_damaging(0.9) TCGA-50-6590-01 7 48266979 48266979 G - ABCA13 Frame_Shift_Del p.D197Mfs*7 0.23 TCGA-50-6590-01 7 4839263 4839263 C A RADIL Silent p.L1040L 0.21 TCGA-50-6590-01 7 50459490 50459490 G T IKZF1 Missense_Mutation p.R218I 0.19 deleterious(0) probably_damaging(0.998) TCGA-50-6590-01 7 57188263 57188263 G T ZNF479 Missense_Mutation p.H287N 0.07 deleterious(0) possibly_damaging(0.765) TCGA-50-6590-01 7 64168595 64168595 G T ZNF107 Missense_Mutation p.C638F 0.33 deleterious(0.01) probably_damaging(1) TCGA-50-6590-01 7 66770984 66770984 A T STAG3L4 RNA 0.17 TCGA-50-6590-01 7 69599543 69599543 G T AUTS2 Nonsense_Mutation p.G216* 0.20 TCGA-50-6590-01 7 72657736 72657736 G C GTF2IRD2P1 RNA 0.05 TCGA-50-6590-01 7 75894765 75894765 G T SRRM3 Missense_Mutation p.S270I 0.22 deleterious(0) unknown(0) TCGA-50-6590-01 7 76054473 76054473 G T ZP3 Missense_Mutation p.K64N 0.17 deleterious(0) probably_damaging(0.948) TCGA-50-6590-01 7 76111985 76111985 G T DTX2 Silent p.V143V 0.35 TCGA-50-6590-01 7 77567233 77567233 T C PHTF2 Intron 0.50 TCGA-50-6590-01 7 77764405 77764405 G T MAGI2 Missense_Mutation p.H988Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 7 80091554 80091554 G T GNAT3 Silent p.V265V 0.17 TCGA-50-6590-01 7 82581843 82581843 C G PCLO Missense_Mutation p.G2809A 0.08 unknown(0) TCGA-50-6590-01 7 82764747 82764747 C G PCLO Missense_Mutation p.V707L 0.22 unknown(0) TCGA-50-6590-01 7 84751139 84751139 C T SEMA3D Missense_Mutation p.M23I 0.23 tolerated(0.35) benign(0.001) TCGA-50-6590-01 7 87746060 87746060 G T ADAM22 Nonsense_Mutation p.E180* 0.13 TCGA-50-6590-01 7 88962752 88962752 C A ZNF804B Silent p.P152P 0.24 TCGA-50-6590-01 7 88965181 88965181 C T ZNF804B Missense_Mutation p.P962L 0.21 tolerated(0.23) benign(0.111) TCGA-50-6590-01 7 92732174 92732174 G T SAMD9 Missense_Mutation p.N1079K 0.27 tolerated(0.66) benign(0.001) TCGA-50-6590-01 7 92764151 92764151 T C SAMD9L Silent p.K378K 0.24 TCGA-50-6590-01 7 94293471 94293471 G T PEG10 Silent p.A201A 0.14 TCGA-50-6590-01 7 98592252 98592252 G T TRRAP Missense_Mutation p.V3350L 0.16 benign(0.075) TCGA-50-6590-01 7 99580970 99580970 G A AZGP1P1 RNA 0.27 TCGA-50-6590-01 7 99699374 99699374 G C AP4M1 Missense_Mutation p.D13H 0.06 deleterious(0) probably_damaging(0.993) TCGA-50-6590-01 8 101153930 101153930 G T FBXO43 Silent p.I184I 0.10 TCGA-50-6590-01 8 104240321 104240321 C A BAALC Silent p.V144V 0.24 TCGA-50-6590-01 8 104426970 104426970 G A DCAF13 5'UTR 0.17 TCGA-50-6590-01 8 10466200 10466200 G T RP1L1 Missense_Mutation p.T1803N 0.18 unknown(0) TCGA-50-6590-01 8 104987691 104987691 G A RIMS2 Missense_Mutation p.G962R 0.33 tolerated_low_confidence(0.08) probably_damaging(0.947) TCGA-50-6590-01 8 105367344 105367344 G A DCSTAMP Silent p.K423K 0.10 TCGA-50-6590-01 8 106813429 106813429 G A ZFPM2 Silent p.Q373Q 0.20 TCGA-50-6590-01 8 110255470 110255470 T A NUDCD1 Missense_Mutation p.Y507F 0.25 tolerated(0.31) benign(0.105) TCGA-50-6590-01 8 110257660 110257660 T A NUDCD1 Missense_Mutation p.K450N 0.15 tolerated(0.31) benign(0.017) TCGA-50-6590-01 8 110535564 110535564 C A PKHD1L1 Missense_Mutation p.P4145T 0.18 tolerated(0.84) benign(0.044) TCGA-50-6590-01 8 113529425 113529425 C A CSMD3 Missense_Mutation p.G1532W 0.21 deleterious(0) probably_damaging(1) TCGA-50-6590-01 8 113564886 113564886 A T CSMD3 Missense_Mutation p.F1433Y 0.20 tolerated(1) possibly_damaging(0.825) TCGA-50-6590-01 8 113668524 113668524 G T CSMD3 Missense_Mutation p.P955T 0.18 deleterious(0.02) probably_damaging(0.992) TCGA-50-6590-01 8 113697770 113697770 G T CSMD3 Missense_Mutation p.P783T 0.18 tolerated(0.2) benign(0.099) TCGA-50-6590-01 8 113933898 113933898 C T CSMD3 Missense_Mutation p.E531K 0.13 deleterious(0.01) probably_damaging(0.981) TCGA-50-6590-01 8 114186069 114186069 C A CSMD3 Silent p.G197G 0.30 TCGA-50-6590-01 8 116599370 116599370 C A TRPS1 Missense_Mutation p.R853L 0.18 tolerated_low_confidence(0.11) possibly_damaging(0.54) TCGA-50-6590-01 8 121224717 121224717 G T COL14A1 Nonsense_Mutation p.E500* 0.19 TCGA-50-6590-01 8 121823892 121823892 G A SNTB1 Silent p.T64T 0.26 TCGA-50-6590-01 8 124265929 124265929 C A ZHX1 Missense_Mutation p.R753I 0.20 deleterious(0.03) probably_damaging(0.949) TCGA-50-6590-01 8 124696882 124696882 T A ANXA13 Missense_Mutation p.T308S 0.19 deleterious(0.03) benign(0.186) TCGA-50-6590-01 8 125498688 125498688 C T RNF139 Silent p.F266F 0.27 TCGA-50-6590-01 8 139815132 139815132 C T COL22A1 Missense_Mutation p.G514R 0.16 unknown(0) TCGA-50-6590-01 8 142505442 142505442 G T MROH5 Missense_Mutation p.P100Q 0.12 tolerated(0.11) possibly_damaging(0.449) TCGA-50-6590-01 8 143956510 143956510 C G CYP11B1 Missense_Mutation p.E421Q 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-50-6590-01 8 144998619 144998619 C A PLEC Silent p.R1963R 0.27 TCGA-50-6590-01 8 145736023 145736023 C T MFSD3 Silent p.L291L 0.08 TCGA-50-6590-01 8 22272314 22272314 G T SLC39A14 Nonsense_Mutation p.E217* 0.18 TCGA-50-6590-01 8 22439036 22439036 C T PDLIM2 Silent p.L330L 0.36 TCGA-50-6590-01 8 23429055 23429055 A T SLC25A37 Missense_Mutation p.Q235L 0.31 tolerated(0.38) benign(0) TCGA-50-6590-01 8 26627776 26627776 G T ADRA1A Intron 0.18 TCGA-50-6590-01 8 30701812 30701812 A - TEX15 Frame_Shift_Del p.H1574Qfs*18 0.21 TCGA-50-6590-01 8 38684771 38684771 C T TACC1 Missense_Mutation p.S513L 0.27 deleterious(0.01) benign(0.027) TCGA-50-6590-01 8 53852868 53852868 G T NPBWR1 Missense_Mutation p.R134L 0.29 deleterious(0) possibly_damaging(0.884) TCGA-50-6590-01 8 55533539 55533539 C G RP1 Missense_Mutation p.P5A 0.12 deleterious(0.02) benign(0.172) TCGA-50-6590-01 8 70744068 70744068 T C SLCO5A1 Missense_Mutation p.I281V 0.18 tolerated(0.06) possibly_damaging(0.549) TCGA-50-6590-01 8 72211453 72211453 G T EYA1 Missense_Mutation p.P219T 0.09 tolerated(1) probably_damaging(0.999) TCGA-50-6590-01 8 72964795 72964795 A G RP11-383H13.1 3'UTR 0.22 TCGA-50-6590-01 8 74742658 74742658 C A UBE2W Missense_Mutation p.G62V 0.15 deleterious(0) probably_damaging(0.997) TCGA-50-6590-01 8 77616468 77616468 G C ZFHX4 Missense_Mutation p.D49H 0.09 probably_damaging(0.934) TCGA-50-6590-01 8 77767959 77767959 G T ZFHX4 Silent p.T2934T 0.19 TCGA-50-6590-01 8 77895970 77895970 C A PEX2 Missense_Mutation p.G149C 0.20 tolerated(0.22) benign(0.033) TCGA-50-6590-01 8 87125988 87125988 C G ATP6V0D2 Missense_Mutation p.H61D 0.10 tolerated(0.07) benign(0) TCGA-50-6590-01 8 87165051 87165051 A T ATP6V0D2 Missense_Mutation p.M300L 0.23 tolerated(1) benign(0) TCGA-50-6590-01 8 87424098 87424098 A G WWP1 Silent p.P352P 0.16 TCGA-50-6590-01 8 88885966 88885966 C A DCAF4L2 Silent p.L78L 0.25 TCGA-50-6590-01 8 95262773 95262773 T C GEM Missense_Mutation p.E219G 0.18 deleterious(0) probably_damaging(1) TCGA-50-6590-01 8 95262774 95262774 C T GEM Missense_Mutation p.E219K 0.19 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 8 97307407 97307407 G T PTDSS1 Missense_Mutation p.G175C 0.29 deleterious(0.02) probably_damaging(1) TCGA-50-6590-01 8 99169968 99169968 C G POP1 Missense_Mutation p.I848M 0.12 tolerated(0.24) benign(0.04) TCGA-50-6590-01 9 101151282 101151282 G T GABBR2 Silent p.S461S 0.31 TCGA-50-6590-01 9 116247969 116247969 T G RGS3 Missense_Mutation p.S229A 0.41 deleterious(0.04) benign(0.111) TCGA-50-6590-01 9 116735 116735 C A FOXD4 3'UTR 0.27 TCGA-50-6590-01 9 119065173 119065173 C A PAPPA Missense_Mutation p.H1031N 0.36 deleterious(0.01) benign(0.107) TCGA-50-6590-01 9 120470840 120470840 G T TLR4 Splice_Site p.X32_splice 0.37 TCGA-50-6590-01 9 123779771 123779771 C G C5 Missense_Mutation p.A579P 0.30 tolerated(0.26) benign(0.251) TCGA-50-6590-01 9 127572612 127572612 A G OLFML2A Missense_Mutation p.D627G 0.28 deleterious(0.02) possibly_damaging(0.822) TCGA-50-6590-01 9 127818240 127818240 C T SCAI Missense_Mutation p.D72N 0.15 deleterious(0.05) possibly_damaging(0.685) TCGA-50-6590-01 9 131105460 131105460 G T SLC27A4 Missense_Mutation p.V17L 0.26 tolerated(0.73) benign(0.004) TCGA-50-6590-01 9 131367432 131367432 G - SPTAN1 Frame_Shift_Del p.D1281Tfs*9 0.26 TCGA-50-6590-01 9 133944389 133944389 G T LAMC3 Missense_Mutation p.D948Y 0.37 deleterious(0) probably_damaging(0.973) TCGA-50-6590-01 9 135277293 135277293 C G TTF1 Missense_Mutation p.D306H 0.05 tolerated_low_confidence(0.09) benign(0.064) TCGA-50-6590-01 9 135862119 135862119 C T GFI1B Silent p.P18P 0.19 TCGA-50-6590-01 9 138586174 138586174 C T SOHLH1 Intron 0.33 TCGA-50-6590-01 9 140040246 140040246 G T GRIN1 Missense_Mutation p.M154I 0.18 tolerated(0.12) benign(0.141) TCGA-50-6590-01 9 15177782 15177782 C T TTC39B Missense_Mutation p.C585Y 0.22 deleterious(0) possibly_damaging(0.628) TCGA-50-6590-01 9 15666171 15666171 G T CCDC171 Missense_Mutation p.R309L 0.43 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 9 20764905 20764905 C G FOCAD Missense_Mutation p.L178V 0.23 tolerated(0.05) possibly_damaging(0.9) TCGA-50-6590-01 9 21350557 21350557 A T IFNA6 Silent p.T110T 0.34 TCGA-50-6590-01 9 32632340 32632340 G T TAF1L Missense_Mutation p.R1080S 0.21 deleterious(0) benign(0.106) TCGA-50-6590-01 9 43915832 43915832 C A CNTNAP3B Missense_Mutation p.S1227Y 0.47 deleterious(0.03) benign(0.101) TCGA-50-6590-01 9 70177795 70177795 C A FOXD4L5 Silent p.R63R 0.15 TCGA-50-6590-01 9 71098889 71098889 C A PGM5 Missense_Mutation p.S468R 0.27 tolerated(0.08) benign(0.09) TCGA-50-6590-01 9 72071250 72071250 G T APBA1 Missense_Mutation p.N567K 0.06 tolerated(0.92) benign(0.253) TCGA-50-6590-01 9 79259661 79259661 G T PRUNE2 Missense_Mutation p.H2908N 0.35 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 9 79321012 79321012 C A PRUNE2 Missense_Mutation p.G2060C 0.41 deleterious(0) probably_damaging(0.959) TCGA-50-6590-01 9 79635338 79635338 C A FOXB2 Silent p.A256A 0.43 TCGA-50-6590-01 9 84532571 84532571 G T SPATA31D5P RNA 0.30 TCGA-50-6590-01 9 8499732 8499732 C A PTPRD Missense_Mutation p.G746V 0.25 deleterious(0) probably_damaging(0.999) TCGA-50-6590-01 9 94495713 94495713 A G ROR2 Missense_Mutation p.F210L 0.26 tolerated(0.09) benign(0.052) TCGA-50-6590-01 9 95599312 95599312 C A ANKRD19P RNA 0.25 TCGA-50-6590-01 9 95797930 95797930 G C FGD3 3'UTR 0.50 TCGA-50-6590-01 9 97876976 97876976 G T FANCC Missense_Mutation p.H363Q 0.38 tolerated(0.29) benign(0.002) TCGA-50-6590-01 X 101910920 101910920 G T GPRASP1 Missense_Mutation p.W693C 0.17 tolerated(0.09) possibly_damaging(0.862) TCGA-50-6590-01 X 106845680 106845680 C T FRMPD3 Silent p.L1504L 0.12 TCGA-50-6590-01 X 107084007 107084007 G A MID2 Missense_Mutation p.E38K 0.15 deleterious(0.03) probably_damaging(0.998) TCGA-50-6590-01 X 110459751 110459751 G A PAK3 Missense_Mutation p.V540M 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-50-6590-01 X 110544905 110544905 C A DCX 3'UTR 0.11 TCGA-50-6590-01 X 117959226 117959226 C A ZCCHC12 Missense_Mutation p.R7S 0.22 tolerated(0.17) possibly_damaging(0.631) TCGA-50-6590-01 X 119510248 119510248 G T ATP1B4 Missense_Mutation p.R258L 0.10 tolerated(0.99) benign(0.004) TCGA-50-6590-01 X 122532532 122532532 G T GRIA3 Missense_Mutation p.A320S 0.14 tolerated(0.07) possibly_damaging(0.624) TCGA-50-6590-01 X 125685253 125685253 C A DCAF12L1 Missense_Mutation p.G447W 0.11 deleterious(0) probably_damaging(1) TCGA-50-6590-01 X 125685683 125685683 C A DCAF12L1 Silent p.L303L 0.12 TCGA-50-6590-01 X 12725695 12725695 C A FRMPD4 Missense_Mutation p.S465R 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-50-6590-01 X 12728532 12728532 G T FRMPD4 Silent p.L495L 0.20 TCGA-50-6590-01 X 134990365 134990365 C G SAGE1 Missense_Mutation p.P426R 0.36 deleterious(0) benign(0.117) TCGA-50-6590-01 X 135455156 135455156 G T GPR112 Missense_Mutation p.R2570L 0.34 deleterious(0.01) benign(0.312) TCGA-50-6590-01 X 142718605 142718605 C T SLITRK4 Missense_Mutation p.S107N 0.11 tolerated(0.05) benign(0.318) TCGA-50-6590-01 X 144909468 144909468 C A TMEM257 Silent p.A91A 0.34 TCGA-50-6590-01 X 151815584 151815584 G A GABRQ Missense_Mutation p.R161H 0.17 deleterious(0) probably_damaging(0.991) TCGA-50-6590-01 X 16850763 16850763 C G TXLNG Missense_Mutation p.F294L 0.09 tolerated(0.06) benign(0.071) TCGA-50-6590-01 X 19042029 19042029 C A GPR64 Nonsense_Mutation p.E170* 0.11 TCGA-50-6590-01 X 24006319 24006319 T C KLHL15 Missense_Mutation p.T512A 0.24 deleterious(0.04) possibly_damaging(0.825) TCGA-50-6590-01 X 24608167 24608167 G T PCYT1B Silent p.L153L 0.23 TCGA-50-6590-01 X 27997756 27997756 C T DCAF8L1 Missense_Mutation p.D566N 0.11 tolerated(0.35) benign(0.001) TCGA-50-6590-01 X 35969364 35969364 G C CXorf22 Missense_Mutation p.G258A 0.30 deleterious(0) probably_damaging(0.987) TCGA-50-6590-01 X 37312670 37312670 T C PRRG1 Silent p.Y151Y 0.20 TCGA-50-6590-01 X 37514997 37514997 G A LANCL3 Silent p.K210K 0.22 TCGA-50-6590-01 X 48976099 48976099 C A GPKOW Missense_Mutation p.M175I 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-50-6590-01 X 50135414 50135414 G T DGKK RNA 0.19 TCGA-50-6590-01 X 54783437 54783437 G A ITIH6 Missense_Mutation p.P1024S 0.31 tolerated(0.16) benign(0.079) TCGA-50-6590-01 X 5810837 5810837 A T NLGN4X 3'UTR 0.17 TCGA-50-6590-01 X 64958393 64958393 G C MSN Missense_Mutation p.E420Q 0.25 deleterious(0.03) probably_damaging(0.962) TCGA-50-6590-01 X 65428069 65428069 G T HEPH Missense_Mutation p.W902C 0.28 tolerated(0.18) possibly_damaging(0.447) TCGA-50-6590-01 X 67413739 67413739 C A OPHN1 Missense_Mutation p.E398D 0.16 deleterious(0) possibly_damaging(0.903) TCGA-50-6590-01 X 67939192 67939192 C A STARD8 Missense_Mutation p.T614N 0.29 deleterious(0) probably_damaging(0.997) TCGA-50-6590-01 X 70782807 70782807 G C OGT Missense_Mutation p.L696F 0.08 tolerated(0.06) probably_damaging(0.998) TCGA-50-6590-01 X 73063375 73063375 G A XIST RNA 0.19 TCGA-50-6590-01 X 73066401 73066401 C A XIST RNA 0.21 TCGA-50-6590-01 X 73066403 73066403 T A XIST RNA 0.21 TCGA-50-6590-01 X 77912978 77912978 C G ZCCHC5 Missense_Mutation p.D314H 0.16 tolerated(0.2) probably_damaging(0.909) TCGA-50-6590-01 X 84562267 84562267 T A POF1B Nonsense_Mutation p.K356* 0.26 TCGA-50-6590-01 X 85211305 85211305 G T CHM Nonsense_Mutation p.S340* 0.22 TCGA-50-6590-01 X 91134268 91134268 G T PCDH11X Missense_Mutation p.R1010I 0.11 deleterious(0) possibly_damaging(0.707) TCGA-50-6591-01 11 1262717 1262717 C T MUC5B Missense_Mutation p.A1536V 0.21 unknown(0) TCGA-50-6591-01 11 33880984 33880984 C G LMO2 Missense_Mutation p.G201A 0.74 deleterious(0) probably_damaging(0.991) TCGA-50-6591-01 11 65811095 65811095 C T GAL3ST3 Missense_Mutation p.R60H 0.42 tolerated(0.06) probably_damaging(0.947) TCGA-50-6591-01 11 66034357 66034358 - TC KLC2 Frame_Shift_Ins p.D603Lfs*66 0.09 TCGA-50-6591-01 12 32138804 32138804 C G KIAA1551 Missense_Mutation p.P1639A 0.20 deleterious(0) probably_damaging(0.999) TCGA-50-6591-01 12 32138805 32138805 C T KIAA1551 Missense_Mutation p.P1639L 0.21 deleterious(0) probably_damaging(1) TCGA-50-6591-01 12 6483790 6483790 A C SCNN1A Missense_Mutation p.S113A 0.21 deleterious(0) probably_damaging(0.999) TCGA-50-6591-01 12 6978046 6978046 C T TPI1 Missense_Mutation p.P82L 0.70 deleterious(0) probably_damaging(0.976) TCGA-50-6591-01 13 32868709 32868709 T G FRY Splice_Site p.X2928_splice 0.39 TCGA-50-6591-01 13 53422137 53422137 G A PCDH8 Silent p.S145S 0.20 TCGA-50-6591-01 13 77655572 77655572 C T MYCBP2 Missense_Mutation p.R3765Q 0.09 probably_damaging(0.963) TCGA-50-6591-01 14 101200790 101200790 C A DLK1 Missense_Mutation p.P237T 0.55 deleterious(0.01) possibly_damaging(0.451) TCGA-50-6591-01 14 38678617 38678617 C T SSTR1 Missense_Mutation p.S8F 0.45 tolerated_low_confidence(0.78) unknown(0) TCGA-50-6591-01 14 45642257 45642257 G C FANCM Splice_Site p.X721_splice 0.08 TCGA-50-6591-01 14 75265095 75265095 G A YLPM1 Missense_Mutation p.R1032Q 0.22 benign(0.151) TCGA-50-6591-01 15 26792930 26792930 G A GABRB3 3'UTR 0.07 TCGA-50-6591-01 15 40558063 40558063 G A PAK6 Silent p.A75A 0.21 TCGA-50-6591-01 15 56141027 56141027 A C NEDD4 Missense_Mutation p.S816A 0.47 tolerated(0.41) benign(0.008) TCGA-50-6591-01 15 75798091 75798091 C G PTPN9 Missense_Mutation p.R298T 0.15 tolerated(0.11) benign(0.009) TCGA-50-6591-01 15 75798092 75798092 T G PTPN9 Silent p.R298R 0.17 TCGA-50-6591-01 16 24931301 24931301 G A ARHGAP17 3'UTR 0.47 TCGA-50-6591-01 16 30736029 30736029 C T SRCAP Missense_Mutation p.P1762S 0.56 possibly_damaging(0.699) TCGA-50-6591-01 17 48940623 48940623 T C TOB1 Silent p.P252P 0.11 TCGA-50-6591-01 17 73774708 73774708 A C H3F3B Missense_Mutation p.L127V 0.04 deleterious_low_confidence(0.02) benign(0.133) TCGA-50-6591-01 17 7579526 7579526 A - TP53 Frame_Shift_Del p.F54Sfs*69 0.54 TCGA-50-6591-01 17 77807808 77807808 C T CBX4 Missense_Mutation p.V545I 0.23 tolerated(0.55) possibly_damaging(0.796) TCGA-50-6591-01 18 28993383 28993383 C T DSG4 Missense_Mutation p.T1002I 0.95 tolerated(0.19) possibly_damaging(0.667) TCGA-50-6591-01 19 37441720 37441720 G C ZNF568 Missense_Mutation p.E555D 0.48 deleterious(0) probably_damaging(0.972) TCGA-50-6591-01 19 56164048 56164048 A G CCDC106 Missense_Mutation p.K260R 0.16 tolerated(0.6) benign(0.067) TCGA-50-6591-01 1 158224874 158224874 G A CD1A Missense_Mutation p.G20E 0.09 tolerated(0.14) probably_damaging(1) TCGA-50-6591-01 1 169564029 169564029 A G SELP Missense_Mutation p.C730R 0.07 deleterious(0) probably_damaging(0.998) TCGA-50-6591-01 1 192998323 192998323 C T UCHL5 Missense_Mutation p.G184E 0.77 deleterious(0) probably_damaging(0.996) TCGA-50-6591-01 1 232564299 232564300 - C SIPA1L2 Frame_Shift_Ins p.E1423Gfs*28 0.48 TCGA-50-6591-01 1 23763945 23763945 G T ASAP3 Missense_Mutation p.Q375K 0.11 deleterious(0.03) benign(0.381) TCGA-50-6591-01 1 248569685 248569685 G T OR2T1 Missense_Mutation p.K130N 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-50-6591-01 1 34049273 34049273 C T CSMD2 Silent p.E2405E 0.60 TCGA-50-6591-01 1 36923551 36923551 A T MRPS15 Nonsense_Mutation p.Y139* 0.41 TCGA-50-6591-01 20 52645352 52645352 C T BCAS1 Missense_Mutation p.R101Q 0.14 tolerated(0.23) benign(0.148) TCGA-50-6591-01 20 61299189 61299189 A G SLCO4A1 Missense_Mutation p.D522G 0.24 deleterious(0.04) benign(0.25) TCGA-50-6591-01 21 35275766 35275766 C T ATP5O 3'UTR 0.25 TCGA-50-6591-01 21 42852432 42852432 C A TMPRSS2 Silent p.G218G 0.44 TCGA-50-6591-01 2 179441553 179441553 G A TTN Missense_Mutation p.P23140S 0.50 TCGA-50-6591-01 2 237276907 237276907 C A IQCA1 Silent p.V533V 0.21 TCGA-50-6591-01 3 155200026 155200026 C T PLCH1 Silent p.T1271T 0.20 TCGA-50-6591-01 3 15686794 15686794 G A BTD Silent p.E477E 0.92 TCGA-50-6591-01 4 39436044 39436049 AGTTGT - KLB In_Frame_Del p.K347_F349delinsI 0.50 TCGA-50-6591-01 4 8620197 8620197 C T CPZ Silent p.G515G 0.45 TCGA-50-6591-01 5 174937120 174937120 C T SFXN1 Missense_Mutation p.P115L 0.25 deleterious(0) benign(0.327) TCGA-50-6591-01 5 177422865 177422865 C G PROP1 Missense_Mutation p.E24Q 0.59 tolerated_low_confidence(0.22) benign(0.033) TCGA-50-6591-01 5 55088620 55088620 C T DDX4 Missense_Mutation p.P485L 0.20 deleterious(0) probably_damaging(1) TCGA-50-6591-01 5 90106986 90106986 C T GPR98 Silent p.F5303F 0.58 TCGA-50-6591-01 6 157100396 157100397 - CGC ARID1B In_Frame_Ins p.P450dup 0.40 TCGA-50-6591-01 6 26271322 26271322 G A HIST1H3G Silent p.C97C 0.10 TCGA-50-6591-01 6 27100386 27100386 C G HIST1H2BJ Missense_Mutation p.Q48H 0.11 deleterious_low_confidence(0) probably_damaging(0.929) TCGA-50-6591-01 6 7370201 7370201 G T CAGE1 Missense_Mutation p.S615Y 0.37 tolerated(0.09) probably_damaging(0.983) TCGA-50-6591-01 7 100681373 100681373 C A MUC17 Missense_Mutation p.P2226T 0.04 unknown(0) TCGA-50-6591-01 7 51258724 51258724 G A COBL Missense_Mutation p.R170C 0.08 deleterious(0) probably_damaging(1) TCGA-50-6591-01 7 55242490 55242507 AAAGCCAACAAGGAAATC - EGFR In_Frame_Del p.K754_I759del 0.80 TCGA-50-6591-01 7 55259439 55259439 T G EGFR Missense_Mutation p.L833V 0.92 deleterious(0) probably_damaging(0.957) TCGA-50-6591-01 7 99821621 99821621 A C GATS Missense_Mutation p.F99V 0.10 tolerated(0.2) possibly_damaging(0.848) TCGA-50-6591-01 9 117062395 117062395 G A COL27A1 Missense_Mutation p.G1544R 0.14 unknown(0) TCGA-50-6591-01 9 125145998 125145998 G A PTGS1 Missense_Mutation p.E325K 0.97 deleterious(0) probably_damaging(0.921) TCGA-50-6591-01 9 125424498 125424498 C A OR1L1 Missense_Mutation p.F168L 0.41 deleterious(0) possibly_damaging(0.766) TCGA-50-6591-01 9 340238 340238 C G DOCK8 Silent p.P532P 0.14 TCGA-50-6591-01 9 8521531 8521531 G T PTPRD Missense_Mutation p.P236Q 0.10 deleterious(0.01) probably_damaging(1) TCGA-50-6591-01 X 11682598 11682598 G C ARHGAP6 Missense_Mutation p.S117R 0.14 deleterious_low_confidence(0.04) benign(0.383) TCGA-50-6591-01 X 12738704 12738704 C A FRMPD4 3'UTR 0.17 TCGA-50-6591-01 X 150842574 150842574 T A PASD1 Silent p.S697S 0.17 TCGA-50-6591-01 X 54578810 54578810 G A GNL3L Missense_Mutation p.E423K 0.17 tolerated(1) benign(0.027) TCGA-50-6591-01 X 55513806 55513806 C T USP51 Missense_Mutation p.A523T 0.31 tolerated(0.72) probably_damaging(0.945) TCGA-50-6591-01 X 70321392 70321392 C T FOXO4 Missense_Mutation p.P438S 0.18 tolerated(0.21) benign(0.004) TCGA-50-6591-01 X 72433139 72433139 C T NAP1L2 Missense_Mutation p.R397H 0.08 deleterious(0.04) probably_damaging(0.938) TCGA-50-6592-01 10 1043054 1043054 A T GTPBP4 Intron 0.10 TCGA-50-6592-01 10 117849413 117849413 C G GFRA1 Missense_Mutation p.G346R 0.19 deleterious(0) probably_damaging(0.992) TCGA-50-6592-01 10 22828995 22828995 T C PIP4K2A Missense_Mutation p.R349G 0.09 tolerated(0.14) benign(0.008) TCGA-50-6592-01 10 50531291 50531291 G T C10orf71 Missense_Mutation p.S234I 0.50 tolerated(0.06) possibly_damaging(0.897) TCGA-50-6592-01 10 5141579 5141579 C T AKR1C3 Missense_Mutation p.R170C 0.34 tolerated(0.09) benign(0.03) TCGA-50-6592-01 10 7751045 7751045 A G ITIH2 Missense_Mutation p.M85V 0.18 tolerated(0.09) benign(0.002) TCGA-50-6592-01 10 77542697 77542697 C G C10orf11 5'UTR 0.20 TCGA-50-6592-01 11 117308126 117308126 C T DSCAML1 Splice_Site p.X1538_splice 0.16 TCGA-50-6592-01 11 123901236 123901236 G T OR10G8 Missense_Mutation p.D303Y 0.14 tolerated(0.39) benign(0.001) TCGA-50-6592-01 11 130343039 130343039 C T ADAMTS15 Silent p.L726L 0.33 TCGA-50-6592-01 11 17408921 17408921 T C KCNJ11 Missense_Mutation p.M240V 0.20 tolerated(1) benign(0.002) TCGA-50-6592-01 11 45241290 45241290 C G PRDM11 Missense_Mutation p.H242D 0.17 tolerated(1) benign(0.002) TCGA-50-6592-01 11 46914542 46914542 G A LRP4 Missense_Mutation p.A560V 0.25 tolerated(0.34) possibly_damaging(0.452) TCGA-50-6592-01 11 4703272 4703272 C A OR51E2 Missense_Mutation p.V224F 0.18 deleterious(0) probably_damaging(0.999) TCGA-50-6592-01 11 48285642 48285642 C A OR4X1 Missense_Mutation p.P77H 0.22 deleterious(0) probably_damaging(0.977) TCGA-50-6592-01 11 55340087 55340087 C A OR4C16 Missense_Mutation p.L162M 0.14 deleterious(0.01) probably_damaging(1) TCGA-50-6592-01 11 55681794 55681794 T C OR5W2 Missense_Mutation p.N89D 0.23 tolerated(0.44) benign(0.004) TCGA-50-6592-01 11 56086504 56086504 G T OR8K3 Missense_Mutation p.G241V 0.14 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-50-6592-01 11 68548137 68548137 C A CPT1A Missense_Mutation p.D477Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-50-6592-01 11 6867752 6867752 C A OR10A5 Missense_Mutation p.T280N 0.18 deleterious(0) probably_damaging(0.948) TCGA-50-6592-01 11 7059931 7059931 G A NLRP14 Missense_Mutation p.M38I 0.16 tolerated(0.49) benign(0.003) TCGA-50-6592-01 11 76257150 76257150 G T C11orf30 Missense_Mutation p.A1195S 0.24 tolerated_low_confidence(0.49) benign(0.045) TCGA-50-6592-01 12 109536251 109536251 G C UNG Missense_Mutation p.K49N 0.09 deleterious(0.01) benign(0.235) TCGA-50-6592-01 12 116453021 116453021 C G MED13L Missense_Mutation p.M356I 0.06 tolerated(0.43) unknown(0) TCGA-50-6592-01 12 118506200 118506200 C T VSIG10 Missense_Mutation p.G517R 0.08 deleterious(0) probably_damaging(1) TCGA-50-6592-01 12 132334445 132334445 T G MMP17 Missense_Mutation p.F435V 0.21 deleterious(0) probably_damaging(0.977) TCGA-50-6592-01 12 133219533 133219533 T G POLE Missense_Mutation p.H1534P 0.22 deleterious(0.01) benign(0.317) TCGA-50-6592-01 12 13906605 13906605 T A GRIN2B Missense_Mutation p.Q219L 0.10 tolerated(0.58) benign(0.004) TCGA-50-6592-01 12 1740485 1740485 T G WNT5B 5'UTR 0.09 TCGA-50-6592-01 12 20833077 20833077 G A PDE3A Missense_Mutation p.E1100K 0.22 tolerated(0.06) benign(0.169) TCGA-50-6592-01 12 22048235 22048235 C A ABCC9 Missense_Mutation p.A545S 0.25 deleterious(0.01) possibly_damaging(0.511) TCGA-50-6592-01 12 22068801 22068801 T A ABCC9 Missense_Mutation p.E206V 0.16 deleterious(0) possibly_damaging(0.865) TCGA-50-6592-01 12 22086858 22086858 C A ABCC9 Splice_Site p.X48_splice 0.12 TCGA-50-6592-01 12 22215287 22215287 G A CMAS Missense_Mutation p.V345I 0.16 tolerated(0.43) benign(0) TCGA-50-6592-01 12 22623828 22623828 G C C2CD5 Silent p.V792V 0.25 TCGA-50-6592-01 12 2621976 2621976 A G CACNA1C Splice_Site p.X406_splice 0.27 TCGA-50-6592-01 12 31132538 31132538 T A TSPAN11 Missense_Mutation p.L130Q 0.08 deleterious(0) possibly_damaging(0.877) TCGA-50-6592-01 12 41327314 41327314 A G CNTN1 Missense_Mutation p.Y252C 0.17 deleterious(0.02) probably_damaging(0.916) TCGA-50-6592-01 12 43777469 43777469 G C ADAMTS20 Missense_Mutation p.I1563M 0.12 tolerated(0.18) benign(0.015) TCGA-50-6592-01 12 46285565 46285565 G T ARID2 Missense_Mutation p.W1642L 0.11 tolerated(0.16) probably_damaging(0.997) TCGA-50-6592-01 12 50025263 50025264 CC T PRPF40B Frame_Shift_Del p.P55Lfs*30 0.20 TCGA-50-6592-01 12 56824676 56824676 C A TIMELESS Missense_Mutation p.G300C 0.16 deleterious(0.01) possibly_damaging(0.827) TCGA-50-6592-01 12 66725408 66725408 C G HELB Missense_Mutation p.P1049A 0.08 deleterious(0.05) probably_damaging(0.958) TCGA-50-6592-01 12 7045534 7045535 - C ATN1 Frame_Shift_Ins p.M371Hfs*9 0.22 TCGA-50-6592-01 12 73012716 73012716 C A TRHDE Nonsense_Mutation p.Y744* 0.11 TCGA-50-6592-01 12 73056972 73056972 C A TRHDE Missense_Mutation p.H1024Q 0.14 deleterious_low_confidence(0) possibly_damaging(0.88) TCGA-50-6592-01 12 81101699 81101699 C A MYF6 Silent p.G67G 0.21 TCGA-50-6592-01 12 8800681 8800681 C T MFAP5 3'UTR 0.14 TCGA-50-6592-01 12 95445612 95445612 C T NR2C1 Missense_Mutation p.M297I 0.13 tolerated(0.44) benign(0) TCGA-50-6592-01 13 102029295 102029295 G A NALCN Missense_Mutation p.P163L 0.34 deleterious(0) probably_damaging(0.999) TCGA-50-6592-01 13 115037862 115037862 G A CDC16 Missense_Mutation p.E603K 0.34 deleterious_low_confidence(0.02) benign(0.257) TCGA-50-6592-01 13 30814603 30814603 T C KATNAL1 Silent p.P240P 0.32 TCGA-50-6592-01 13 42780201 42780201 C T DGKH Silent p.P840P 0.21 TCGA-50-6592-01 13 45149716 45149716 T A TSC22D1 Missense_Mutation p.L165F 0.27 tolerated(0.05) probably_damaging(0.997) TCGA-50-6592-01 13 47469796 47469796 G T HTR2A Silent p.A82A 0.22 TCGA-50-6592-01 13 50307098 50307098 T C KPNA3 Missense_Mutation p.K67E 0.39 tolerated(0.51) benign(0.217) TCGA-50-6592-01 13 70281786 70281786 A T KLHL1 Missense_Mutation p.Y720N 0.23 deleterious(0) probably_damaging(0.999) TCGA-50-6592-01 13 84454937 84454937 T C SLITRK1 Missense_Mutation p.I236V 0.28 tolerated(1) benign(0.012) TCGA-50-6592-01 14 20019816 20019816 G T POTEM Silent p.V135V 0.26 TCGA-50-6592-01 14 20404199 20404199 C A OR4K1 Missense_Mutation p.A125D 0.12 deleterious(0) probably_damaging(0.999) TCGA-50-6592-01 14 20404200 20404200 C T OR4K1 Silent p.A125A 0.12 TCGA-50-6592-01 14 20444178 20444178 G C OR4K15 Silent p.V167V 0.24 TCGA-50-6592-01 14 20757805 20757805 G T TTC5 Nonsense_Mutation p.S435* 0.20 TCGA-50-6592-01 14 50140867 50140867 G A POLE2 Missense_Mutation p.R131C 0.06 deleterious(0) possibly_damaging(0.726) TCGA-50-6592-01 14 51259545 51259545 C T NIN Missense_Mutation p.R107Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-50-6592-01 14 64610661 64610661 A G SYNE2 Missense_Mutation p.R5160G 0.22 benign(0.014) TCGA-50-6592-01 15 23890089 23890089 C A MAGEL2 Missense_Mutation p.W331L 0.11 tolerated(0.06) possibly_damaging(0.534) TCGA-50-6592-01 15 25287155 25287155 G T SNORD109A RNA 0.14 TCGA-50-6592-01 15 34030761 34030761 C T RYR3 Silent p.F2542F 0.24 TCGA-50-6592-01 15 53907714 53907714 C G WDR72 Missense_Mutation p.E897Q 0.23 tolerated(0.32) benign(0.033) TCGA-50-6592-01 15 69561478 69561478 C G GLCE Missense_Mutation p.I583M 0.17 deleterious(0) probably_damaging(0.988) TCGA-50-6592-01 15 71128813 71128813 G A LARP6 Missense_Mutation p.R78C 0.11 tolerated(0.05) benign(0.326) TCGA-50-6592-01 15 72968456 72968456 C A HIGD2B Missense_Mutation p.G87V 0.31 deleterious(0) probably_damaging(0.99) TCGA-50-6592-01 15 74426491 74426491 C G ISLR2 Missense_Mutation p.R466G 0.22 deleterious(0.02) benign(0.111) TCGA-50-6592-01 15 83240093 83240093 C T CPEB1 Splice_Site p.X127_splice 0.11 TCGA-50-6592-01 15 90771740 90771740 C T SEMA4B Silent p.S793S 0.18 TCGA-50-6592-01 16 2104434 2104434 A G TSC2 Silent p.E158E 0.11 TCGA-50-6592-01 16 2313105 2313105 G A RNPS1 Silent p.S137S 0.12 TCGA-50-6592-01 16 31414913 31414913 C A ITGAD Silent p.P217P 0.10 TCGA-50-6592-01 16 335705 335705 T A PDIA2 Splice_Site p.X373_splice 0.18 TCGA-50-6592-01 16 3820748 3820748 C A CREBBP Silent p.P901P 0.19 TCGA-50-6592-01 16 66434680 66434680 C T CDH5 Missense_Mutation p.T533M 0.34 deleterious(0) probably_damaging(0.997) TCGA-50-6592-01 16 71610280 71610280 G T TAT Missense_Mutation p.N13K 0.15 tolerated_low_confidence(0.76) benign(0.049) TCGA-50-6592-01 16 75204195 75204195 G C ZFP1 Missense_Mutation p.S396T 0.29 tolerated(1) benign(0.008) TCGA-50-6592-01 16 84035950 84035950 G A NECAB2 Silent p.%3D 0.26 TCGA-50-6592-01 16 89245841 89245841 G T CDH15 Missense_Mutation p.L20F 0.20 tolerated(0.42) benign(0) TCGA-50-6592-01 17 10360813 10360813 A T MYH4 Silent p.T607T 0.19 TCGA-50-6592-01 17 10448685 10448685 G A MYH2 Silent p.N161N 0.11 TCGA-50-6592-01 17 12032561 12032561 G T MAP2K4 Nonsense_Mutation p.E333* 0.18 TCGA-50-6592-01 17 18040988 18040988 G A MYO15A Missense_Mutation p.E1624K 0.30 unknown(0) TCGA-50-6592-01 17 43923137 43923137 G T SPPL2C Missense_Mutation p.A289S 0.18 tolerated(1) possibly_damaging(0.819) TCGA-50-6592-01 17 45009463 45009463 G T GOSR2 Missense_Mutation p.Q78H 0.09 deleterious(0.01) benign(0.198) TCGA-50-6592-01 17 45009464 45009464 C T GOSR2 Missense_Mutation p.H79Y 0.09 deleterious(0) probably_damaging(0.986) TCGA-50-6592-01 17 4535475 4535475 C A ALOX15 Splice_Site p.X547_splice 0.33 TCGA-50-6592-01 17 61655948 61655948 G T DCAF7 Intron 0.30 TCGA-50-6592-01 17 62750577 62750577 G C hsa-mir-6080 RNA 0.19 TCGA-50-6592-01 17 65924679 65924679 C T BPTF Missense_Mutation p.T1987I 0.12 probably_damaging(0.999) TCGA-50-6592-01 17 66902272 66902272 G C ABCA8 Missense_Mutation p.L731V 0.11 deleterious(0.03) benign(0.272) TCGA-50-6592-01 17 74774475 74774475 A T MFSD11 3'UTR 0.20 TCGA-50-6592-01 17 7577536 7577536 T C TP53 Missense_Mutation p.R249G 0.18 deleterious(0) probably_damaging(0.991) TCGA-50-6592-01 17 78318726 78318726 C G RNF213 Missense_Mutation p.C2197W 0.10 probably_damaging(1) TCGA-50-6592-01 18 11884315 11884315 G C MPPE1 3'UTR 0.27 TCGA-50-6592-01 18 13124693 13124693 C G CEP192 Missense_Mutation p.A2513G 0.09 tolerated(0.39) benign(0.084) TCGA-50-6592-01 18 24441225 24441225 A T AQP4 Missense_Mutation p.L161Q 0.10 deleterious(0.01) possibly_damaging(0.796) TCGA-50-6592-01 18 2891556 2891556 C T EMILIN2 Silent p.G477G 0.21 TCGA-50-6592-01 18 2892120 2892120 T C EMILIN2 Silent p.H665H 0.29 TCGA-50-6592-01 18 30803079 30803079 T C CCDC178 Missense_Mutation p.I641M 0.10 tolerated(0.23) benign(0.031) TCGA-50-6592-01 18 33694102 33694102 T C SLC39A6 Missense_Mutation p.M601V 0.10 deleterious(0) probably_damaging(0.997) TCGA-50-6592-01 18 39617691 39617691 G T PIK3C3 Silent p.T625T 0.15 TCGA-50-6592-01 18 6999564 6999564 C A LAMA1 Missense_Mutation p.G1515C 0.19 deleterious(0) probably_damaging(1) TCGA-50-6592-01 18 8824821 8824821 G C SOGA2 Missense_Mutation p.D1105H 0.21 deleterious(0.01) probably_damaging(1) TCGA-50-6592-01 18 9255003 9255003 C G ANKRD12 Missense_Mutation p.L580V 0.17 tolerated_low_confidence(0.14) benign(0.05) TCGA-50-6592-01 19 13220612 13220612 C T TRMT1 Missense_Mutation p.E383K 0.23 tolerated(0.55) benign(0.013) TCGA-50-6592-01 19 14693909 14693909 G T CLEC17A 5'Flank 0.33 TCGA-50-6592-01 19 17452041 17452041 C T GTPBP3 Missense_Mutation p.P420L 0.38 tolerated(0.48) benign(0.005) TCGA-50-6592-01 19 18893990 18893990 C T COMP Missense_Mutation p.E701K 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-50-6592-01 19 1986642 1986642 C T BTBD2 Missense_Mutation p.D475N 0.11 tolerated(0.05) possibly_damaging(0.613) TCGA-50-6592-01 19 22940005 22940005 A G ZNF99 3'Flank 0.28 TCGA-50-6592-01 19 34791643 34791643 G A KIAA0355 Missense_Mutation p.V89I 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.899) TCGA-50-6592-01 19 37314611 37314611 T A ZNF790 Nonsense_Mutation p.R31* 0.18 TCGA-50-6592-01 19 37619928 37619928 G T ZNF420 Missense_Mutation p.D679Y 0.19 deleterious(0) benign(0) TCGA-50-6592-01 19 37734241 37734241 G T ZNF383 Missense_Mutation p.C368F 0.15 deleterious(0) probably_damaging(1) TCGA-50-6592-01 19 37734245 37734245 G A ZNF383 Silent p.K369K 0.15 TCGA-50-6592-01 19 38161104 38161104 A G ZNF781 5'UTR 0.06 TCGA-50-6592-01 19 39798860 39798860 G T LRFN1 Missense_Mutation p.P577T 0.26 tolerated(0.54) benign(0.026) TCGA-50-6592-01 19 40009424 40009424 C T SELV Silent p.H293H 0.19 TCGA-50-6592-01 19 40095887 40095887 C T LGALS13 Silent p.F54F 0.25 TCGA-50-6592-01 19 41129916 41129916 G C LTBP4 Missense_Mutation p.C1320S 0.16 deleterious(0) possibly_damaging(0.882) TCGA-50-6592-01 19 42557843 42557843 T A GRIK5 Missense_Mutation p.N394Y 0.17 tolerated(0.09) probably_damaging(0.944) TCGA-50-6592-01 19 43093016 43093016 T A CEACAM8 Missense_Mutation p.N293I 0.19 deleterious(0.02) benign(0.255) TCGA-50-6592-01 19 43268091 43268091 C G PSG8 Missense_Mutation p.G136A 0.09 deleterious(0.01) benign(0.429) TCGA-50-6592-01 19 44096657 44096657 C A IRGQ Missense_Mutation p.A465S 0.22 tolerated(0.09) benign(0.01) TCGA-50-6592-01 19 44097241 44097241 G A IRGQ Missense_Mutation p.P270L 0.17 deleterious(0) probably_damaging(1) TCGA-50-6592-01 19 46198725 46198725 G T QPCTL Missense_Mutation p.A128S 0.23 tolerated(0.06) benign(0.068) TCGA-50-6592-01 19 50251357 50251357 G T TSKS Nonsense_Mutation p.Y188* 0.17 TCGA-50-6592-01 19 50306261 50306261 A - AP2A1 Frame_Shift_Del p.K746Sfs*90 0.23 TCGA-50-6592-01 19 53207861 53207861 G T ZNF611 3'UTR 0.18 TCGA-50-6592-01 19 53269696 53269696 C A ZNF600 Missense_Mutation p.G438V 0.14 deleterious(0) probably_damaging(1) TCGA-50-6592-01 19 53762196 53762196 A T VN1R2 Missense_Mutation p.T190S 0.21 deleterious(0.04) possibly_damaging(0.786) TCGA-50-6592-01 19 56565024 56565024 C A NLRP5 Missense_Mutation p.T1050N 0.30 deleterious(0) probably_damaging(0.962) TCGA-50-6592-01 19 6981129 6981129 G T EMR4P RNA 0.17 TCGA-50-6592-01 19 804558 804558 G T PTBP1 Silent p.V154V 0.16 TCGA-50-6592-01 19 9406091 9406091 T C ZNF699 3'UTR 0.33 TCGA-50-6592-01 1 104121933 104121933 G A AMY2B Nonsense_Mutation p.W449* 0.10 TCGA-50-6592-01 1 112319865 112319865 C G KCND3 Missense_Mutation p.E517Q 0.12 tolerated_low_confidence(0.26) possibly_damaging(0.728) TCGA-50-6592-01 1 11985482 11985482 G A KIAA2013 Silent p.N271N 0.14 TCGA-50-6592-01 1 12955571 12955571 G T PRAMEF10 Missense_Mutation p.F36L 0.16 deleterious(0) possibly_damaging(0.858) TCGA-50-6592-01 1 145561550 145561550 A G ANKRD35 Missense_Mutation p.Q413R 0.15 deleterious(0.05) benign(0.403) TCGA-50-6592-01 1 149858747 149858749 AAG - HIST2H2AC In_Frame_Del p.K76del 0.16 TCGA-50-6592-01 1 151138661 151138661 T A SCNM1 Missense_Mutation p.S11R 0.38 deleterious(0) probably_damaging(0.999) TCGA-50-6592-01 1 151239877 151239877 A G PSMD4 3'UTR 0.36 TCGA-50-6592-01 1 152082275 152082275 A T TCHH Missense_Mutation p.Y1140N 0.16 unknown(0) TCGA-50-6592-01 1 152671410 152671410 G T LCE2A Missense_Mutation p.Q11H 0.24 tolerated_low_confidence(0.19) unknown(0) TCGA-50-6592-01 1 154480955 154480955 A T TDRD10 Nonsense_Mutation p.K47* 0.20 TCGA-50-6592-01 1 154956263 154956263 C T FLAD1 Silent p.L31L 0.11 TCGA-50-6592-01 1 155156452 155156452 C T TRIM46 Missense_Mutation p.P689L 0.19 deleterious(0.05) probably_damaging(0.999) TCGA-50-6592-01 1 155452127 155452127 C T ASH1L Silent p.L178L 0.18 TCGA-50-6592-01 1 156568897 156568897 C T GPATCH4 Intron 0.30 TCGA-50-6592-01 1 158725513 158725513 T A OR6K6 Missense_Mutation p.V303D 0.26 deleterious(0.01) benign(0.213) TCGA-50-6592-01 1 162470787 162470787 G C UHMK1 Missense_Mutation p.D216H 0.07 tolerated(0.07) possibly_damaging(0.521) TCGA-50-6592-01 1 167823640 167823640 T A ADCY10 Missense_Mutation p.Q753H 0.23 tolerated(1) benign(0.002) TCGA-50-6592-01 1 183247699 183247699 T C NMNAT2 Missense_Mutation p.N214D 0.12 tolerated(0.17) benign(0.423) TCGA-50-6592-01 1 205814509 205814509 C T PM20D1 Missense_Mutation p.E145K 0.15 tolerated(0.25) benign(0.178) TCGA-50-6592-01 1 212534193 212534193 C T PPP2R5A 3'UTR 0.14 TCGA-50-6592-01 1 216017807 216017807 G A USH2A Silent p.V3029V 0.06 TCGA-50-6592-01 1 216246251 216246251 C T USH2A Missense_Mutation p.R1946Q 0.08 possibly_damaging(0.831) TCGA-50-6592-01 1 222716993 222716993 C A HHIPL2 Missense_Mutation p.R287L 0.20 tolerated(0.15) benign(0.067) TCGA-50-6592-01 1 234444964 234444964 G C SLC35F3 Missense_Mutation p.K242N 0.04 deleterious(0.05) possibly_damaging(0.763) TCGA-50-6592-01 1 241797473 241797473 C T CHML Silent p.P532P 0.10 TCGA-50-6592-01 1 243828134 243828134 C A AKT3 Missense_Mutation p.R75I 0.21 deleterious(0.03) possibly_damaging(0.812) TCGA-50-6592-01 1 24706266 24706266 T C STPG1 Silent p.A113A 0.23 TCGA-50-6592-01 1 248028155 248028155 T C TRIM58 Missense_Mutation p.L222P 0.20 deleterious(0.02) benign(0.426) TCGA-50-6592-01 1 248028156 248028156 G T TRIM58 Silent p.L222L 0.21 TCGA-50-6592-01 1 248525654 248525654 C A OR2T4 Missense_Mutation p.H258N 0.23 tolerated(0.29) possibly_damaging(0.864) TCGA-50-6592-01 1 27742500 27742500 C T WASF2 Missense_Mutation p.M172I 0.10 tolerated(0.23) unknown(0) TCGA-50-6592-01 1 29475666 29475666 G A SRSF4 Silent p.S247S 0.09 TCGA-50-6592-01 1 32557333 32557333 C G TMEM39B Silent p.L216L 0.22 TCGA-50-6592-01 1 3321339 3321339 C T PRDM16 Silent p.R307R 0.10 TCGA-50-6592-01 1 36939048 36939048 G A CSF3R Missense_Mutation p.P221S 0.10 deleterious(0) probably_damaging(0.999) TCGA-50-6592-01 1 42049869 42049869 G T HIVEP3 Silent p.P200P 0.07 TCGA-50-6592-01 1 71512458 71512458 T A PTGER3 Missense_Mutation p.Q268L 0.09 tolerated(0.08) benign(0.085) TCGA-50-6592-01 1 87025657 87025658 - A CLCA4 Frame_Shift_Ins p.R70Kfs*13 0.11 TCGA-50-6592-01 1 89630438 89630438 C T GBP7 Silent p.T98T 0.11 TCGA-50-6592-01 20 18022306 18022306 A - OVOL2 Frame_Shift_Del p.F128Sfs*7 0.16 TCGA-50-6592-01 20 23431200 23431200 A G CST11 Silent p.F120F 0.28 TCGA-50-6592-01 20 35627292 35627292 T G RBL1 Missense_Mutation p.Q1026P 0.09 tolerated(0.27) possibly_damaging(0.633) TCGA-50-6592-01 20 40944397 40944397 C G PTPRT Missense_Mutation p.S702T 0.12 tolerated(0.65) benign(0.058) TCGA-50-6592-01 20 43378982 43378982 G C KCNK15 Missense_Mutation p.A166P 0.14 tolerated(0.14) benign(0.43) TCGA-50-6592-01 20 47296204 47296204 C T PREX1 Silent p.E508E 0.12 TCGA-50-6592-01 20 62121989 62121989 G A EEF1A2 Missense_Mutation p.S291L 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-50-6592-01 21 37584329 37584329 G T DOPEY2 Missense_Mutation p.A280S 0.17 tolerated(0.06) possibly_damaging(0.889) TCGA-50-6592-01 22 16449060 16449060 T C OR11H1 Missense_Mutation p.R249G 0.20 deleterious(0) probably_damaging(0.93) TCGA-50-6592-01 22 19965107 19965107 C A ARVCF Silent p.S567S 0.20 TCGA-50-6592-01 22 37334309 37334309 G A CSF2RB Missense_Mutation p.G820D 0.18 deleterious(0) probably_damaging(0.983) TCGA-50-6592-01 22 46795764 46795764 G A CELSR1 Silent p.H1754H 0.30 TCGA-50-6592-01 22 51065403 51065403 G A ARSA Silent p.I181I 0.27 TCGA-50-6592-01 2 105716185 105716185 G T MRPS9 Missense_Mutation p.G386V 0.08 deleterious(0) probably_damaging(0.999) TCGA-50-6592-01 2 114500365 114500365 C G SLC35F5 Missense_Mutation p.M218I 0.13 tolerated(0.06) benign(0.007) TCGA-50-6592-01 2 11772056 11772056 C T GREB1 Missense_Mutation p.P1545S 0.09 deleterious(0) probably_damaging(0.999) TCGA-50-6592-01 2 118860814 118860814 G T INSIG2 Nonsense_Mutation p.G96* 0.15 TCGA-50-6592-01 2 118860815 118860815 G C INSIG2 Missense_Mutation p.G96A 0.15 deleterious(0.03) possibly_damaging(0.817) TCGA-50-6592-01 2 136562355 136562355 G A LCT Silent p.A1482A 0.27 TCGA-50-6592-01 2 155711422 155711422 C A KCNJ3 Nonsense_Mutation p.S368* 0.14 TCGA-50-6592-01 2 157407174 157407174 C T GPD2 Missense_Mutation p.S296F 0.14 deleterious(0.02) benign(0.006) TCGA-50-6592-01 2 164468117 164468117 A C FIGN Nonsense_Mutation p.Y75* 0.04 TCGA-50-6592-01 2 174820362 174820362 T A SP3 Missense_Mutation p.D293V 0.14 deleterious(0) probably_damaging(0.991) TCGA-50-6592-01 2 17897451 17897451 C G SMC6 Missense_Mutation p.R476P 0.13 tolerated(0.41) benign(0.009) TCGA-50-6592-01 2 179415750 179415750 C G TTN Missense_Mutation p.G30503A 0.15 TCGA-50-6592-01 2 187626606 187626606 A G FAM171B Missense_Mutation p.R513G 0.30 tolerated(0.33) benign(0.058) TCGA-50-6592-01 2 196849397 196849397 G C DNAH7 Missense_Mutation p.L598V 0.12 tolerated(0.11) possibly_damaging(0.498) TCGA-50-6592-01 2 205829890 205829890 G A PARD3B Missense_Mutation p.E80K 0.13 deleterious(0.03) benign(0.003) TCGA-50-6592-01 2 209358129 209358129 G T PTH2R Silent p.A466A 0.29 TCGA-50-6592-01 2 220098947 220098947 A G ANKZF1 Missense_Mutation p.I381V 0.09 tolerated(0.35) benign(0.002) TCGA-50-6592-01 2 222298897 222298897 C A EPHA4 Missense_Mutation p.G821W 0.29 deleterious(0) probably_damaging(0.999) TCGA-50-6592-01 2 223513485 223513485 C G FARSB Missense_Mutation p.E30Q 0.13 tolerated(0.11) benign(0.008) TCGA-50-6592-01 2 224462659 224462659 G C SCG2 Missense_Mutation p.Q448E 0.03 tolerated(0.16) benign(0.098) TCGA-50-6592-01 2 231174740 231174740 T A SP140 Silent p.P720P 0.07 TCGA-50-6592-01 2 233431656 233431656 G T EIF4E2 Nonsense_Mutation p.E165* 0.11 TCGA-50-6592-01 2 233899563 233899563 G A NEU2 Silent p.P313P 0.17 TCGA-50-6592-01 2 26678075 26678075 C T DRC1 Silent p.L714L 0.09 TCGA-50-6592-01 2 26864168 26864168 C T CIB4 Silent p.L5L 0.14 TCGA-50-6592-01 2 27261663 27261663 A C TMEM214 Missense_Mutation p.T463P 0.18 tolerated(0.21) possibly_damaging(0.509) TCGA-50-6592-01 2 27305857 27305857 G A EMILIN1 Missense_Mutation p.G473E 0.20 probably_damaging(0.985) TCGA-50-6592-01 2 27461359 27461359 C T CAD Missense_Mutation p.H1641Y 0.23 tolerated(0.64) possibly_damaging(0.893) TCGA-50-6592-01 2 31637538 31637538 C A XDH 5'UTR 0.21 TCGA-50-6592-01 2 39944312 39944312 G C TMEM178A Missense_Mutation p.G272A 0.13 deleterious(0.04) probably_damaging(0.978) TCGA-50-6592-01 2 45233433 45233433 C - SIX2 Frame_Shift_Del p.G251Afs*47 0.22 TCGA-50-6592-01 2 48822396 48822396 C T STON1 Silent p.I721I 0.09 TCGA-50-6592-01 2 60988923 60988923 C T PAPOLG Missense_Mutation p.S76F 0.12 tolerated(0.41) benign(0.02) TCGA-50-6592-01 2 9525441 9525441 A T ASAP2 Missense_Mutation p.H695L 0.07 tolerated(0.53) benign(0.244) TCGA-50-6592-01 2 97297100 97297100 G C KANSL3 Missense_Mutation p.T112S 0.15 tolerated(0.05) benign(0.062) TCGA-50-6592-01 3 113225387 113225387 C G SPICE1 Missense_Mutation p.K22N 0.22 deleterious(0.01) possibly_damaging(0.843) TCGA-50-6592-01 3 119248738 119248738 A G CD80 Silent p.I249I 0.10 TCGA-50-6592-01 3 126708349 126708349 G T PLXNA1 Missense_Mutation p.A305S 0.20 tolerated(0.6) benign(0.099) TCGA-50-6592-01 3 130447403 130447403 G C PIK3R4 Missense_Mutation p.Q571E 0.10 tolerated(0.17) possibly_damaging(0.58) TCGA-50-6592-01 3 133525472 133525472 G T SRPRB Silent p.R58R 0.07 TCGA-50-6592-01 3 164764690 164764690 C T SI Nonsense_Mutation p.W609* 0.16 TCGA-50-6592-01 3 172098807 172098807 C G FNDC3B Missense_Mutation p.T1076R 0.20 tolerated(0.12) possibly_damaging(0.589) TCGA-50-6592-01 3 178916946 178916946 G C PIK3CA Missense_Mutation p.K111N 0.24 deleterious(0) probably_damaging(0.989) TCGA-50-6592-01 3 184090235 184090235 A G THPO 3'UTR 0.31 TCGA-50-6592-01 3 185347653 185347653 C T SENP2 3'UTR 0.16 TCGA-50-6592-01 3 185970902 185970902 C T DGKG Missense_Mutation p.R527H 0.28 deleterious(0.01) probably_damaging(1) TCGA-50-6592-01 3 185975687 185975687 G T DGKG Missense_Mutation p.A489D 0.07 deleterious(0.01) probably_damaging(1) TCGA-50-6592-01 3 189590692 189590692 G A TP63 Silent p.E419E 0.15 TCGA-50-6592-01 3 190147425 190147425 C A TMEM207 Missense_Mutation p.G134C 0.34 deleterious(0) probably_damaging(0.989) TCGA-50-6592-01 3 194117342 194117342 C A GP5 Missense_Mutation p.R557I 0.24 deleterious(0.01) benign(0.406) TCGA-50-6592-01 3 196387756 196387756 C A NRROS Silent p.L414L 0.17 TCGA-50-6592-01 3 32805965 32805965 A G CNOT10 Missense_Mutation p.N680S 0.07 tolerated(0.64) benign(0.295) TCGA-50-6592-01 3 69097192 69097192 T C TMF1 Missense_Mutation p.T222A 0.21 tolerated_low_confidence(0.18) benign(0.002) TCGA-50-6592-01 4 106744216 106744216 G T GSTCD Missense_Mutation p.C449F 0.16 deleterious(0) probably_damaging(0.999) TCGA-50-6592-01 4 114195639 114195639 G T ANK2 Missense_Mutation p.R506L 0.24 possibly_damaging(0.726) TCGA-50-6592-01 4 114824400 114824400 C T ARSJ Missense_Mutation p.R277K 0.23 tolerated(0.67) benign(0.004) TCGA-50-6592-01 4 118006123 118006123 C A TRAM1L1 Nonsense_Mutation p.E143* 0.21 TCGA-50-6592-01 4 164049972 164049972 C T NAF1 3'UTR 0.21 TCGA-50-6592-01 4 177143487 177143487 T C ASB5 Missense_Mutation p.T121A 0.19 tolerated(0.93) benign(0.002) TCGA-50-6592-01 4 1823941 1823941 C T LETM1 Silent p.L525L 0.20 TCGA-50-6592-01 4 36134867 36134867 T C ARAP2 Missense_Mutation p.I1136M 0.06 deleterious(0.01) probably_damaging(0.961) TCGA-50-6592-01 4 38776689 38776689 T G TLR10 Silent p.R175R 0.12 TCGA-50-6592-01 4 48170630 48170630 T A TEC Silent p.A156A 0.14 TCGA-50-6592-01 4 69692148 69692148 G T UGT2B10 Silent p.G340G 0.20 TCGA-50-6592-01 4 71510242 71510242 C G ENAM Missense_Mutation p.I1033M 0.24 deleterious(0.01) benign(0.379) TCGA-50-6592-01 4 7435376 7435376 C T PSAPL1 Missense_Mutation p.E411K 0.25 deleterious(0) benign(0.24) TCGA-50-6592-01 4 8607764 8607764 C A CPZ Missense_Mutation p.A253E 0.11 deleterious(0.01) possibly_damaging(0.778) TCGA-50-6592-01 4 95206110 95206110 G C SMARCAD1 Splice_Site p.X972_splice 0.29 TCGA-50-6592-01 4 997818 997818 G A IDUA Silent p.E582E 0.17 TCGA-50-6592-01 5 110462460 110462460 C T WDR36 Missense_Mutation p.P912L 0.16 deleterious(0.04) possibly_damaging(0.72) TCGA-50-6592-01 5 139943182 139943182 C G APBB3 Missense_Mutation p.R96P 0.33 tolerated(0.21) benign(0.385) TCGA-50-6592-01 5 140741751 140741751 C - PCDHGB2 Frame_Shift_Del p.Q685Rfs*14 0.19 TCGA-50-6592-01 5 147027952 147027952 T G JAKMIP2 Missense_Mutation p.E308A 0.23 tolerated(0.08) probably_damaging(0.969) TCGA-50-6592-01 5 14769115 14769115 C T ANKH Silent p.G94G 0.50 TCGA-50-6592-01 5 169533524 169533524 A T FOXI1 Missense_Mutation p.E188V 0.24 deleterious(0) probably_damaging(0.927) TCGA-50-6592-01 5 176884408 176884408 A C DBN1 3'UTR 0.16 TCGA-50-6592-01 5 180651801 180651801 C T TRIM41 Nonsense_Mutation p.Q268* 0.20 TCGA-50-6592-01 5 23526879 23526879 T A PRDM9 Missense_Mutation p.F561Y 0.12 deleterious(0) benign(0.106) TCGA-50-6592-01 5 32270928 32270928 T A MTMR12 Nonsense_Mutation p.K162* 0.09 TCGA-50-6592-01 5 33881443 33881443 C A ADAMTS12 Missense_Mutation p.W90C 0.22 tolerated(0.18) possibly_damaging(0.643) TCGA-50-6592-01 5 34863158 34863158 C A TTC23L Missense_Mutation p.R179S 0.25 tolerated(0.15) benign(0.11) TCGA-50-6592-01 5 35037072 35037072 G T AGXT2 Missense_Mutation p.A154D 0.09 deleterious(0.03) benign(0.392) TCGA-50-6592-01 5 40958273 40958273 A C C7 Missense_Mutation p.T467P 0.19 tolerated(0.14) benign(0.24) TCGA-50-6592-01 5 45396782 45396782 C G HCN1 Missense_Mutation p.A348P 0.23 deleterious(0) possibly_damaging(0.806) TCGA-50-6592-01 5 45645511 45645511 C - HCN1 Frame_Shift_Del p.D209Tfs*4 0.21 TCGA-50-6592-01 5 7717298 7717298 G C ADCY2 Missense_Mutation p.E551Q 0.08 tolerated(0.06) probably_damaging(0.917) TCGA-50-6592-01 5 9066617 9066617 C A SEMA5A Missense_Mutation p.D739Y 0.33 deleterious(0) probably_damaging(0.959) TCGA-50-6592-01 5 9226985 9226985 C A SEMA5A Missense_Mutation p.R143L 0.27 deleterious(0) possibly_damaging(0.894) TCGA-50-6592-01 6 110752419 110752419 C A SLC22A16 Silent p.A492A 0.16 TCGA-50-6592-01 6 117127977 117127977 C T GPRC6A Silent p.K297K 0.12 TCGA-50-6592-01 6 117128020 117128020 A G GPRC6A Missense_Mutation p.V283A 0.12 deleterious(0.01) possibly_damaging(0.8) TCGA-50-6592-01 6 143093059 143093059 C G HIVEP2 Missense_Mutation p.K939N 0.11 deleterious(0) probably_damaging(0.997) TCGA-50-6592-01 6 160477509 160477509 G A IGF2R Nonsense_Mutation p.W916* 0.09 TCGA-50-6592-01 6 26423299 26423299 C T BTN2A3P RNA 0.17 TCGA-50-6592-01 6 2693022 2693022 G A MYLK4 Silent p.L77L 0.15 TCGA-50-6592-01 6 33627307 33627307 T A ITPR3 Missense_Mutation p.L231Q 0.28 tolerated(0.83) benign(0.007) TCGA-50-6592-01 6 45480048 45480048 C G RUNX2 Missense_Mutation p.Q309E 0.08 tolerated(0.26) probably_damaging(0.966) TCGA-50-6592-01 6 53660211 53660211 G C LRRC1 Missense_Mutation p.E53Q 0.17 tolerated(0.08) benign(0.064) TCGA-50-6592-01 6 87725133 87725133 G C HTR1E Missense_Mutation p.M27I 0.12 tolerated(0.19) benign(0.001) TCGA-50-6592-01 6 89909084 89909084 G A GABRR1 Silent p.D115D 0.15 TCGA-50-6592-01 7 100239148 100239148 T A TFR2 5'UTR 0.16 TCGA-50-6592-01 7 107350585 107350585 A G SLC26A4 Missense_Mutation p.I726V 0.13 tolerated(1) benign(0.001) TCGA-50-6592-01 7 117876904 117876904 G T ANKRD7 Missense_Mutation p.Q212H 0.23 deleterious(0) possibly_damaging(0.65) TCGA-50-6592-01 7 121023022 121023022 A G FAM3C Translation_Start_Site p.M1? 0.05 deleterious(0) benign(0.402) TCGA-50-6592-01 7 1273285 1273285 G T UNCX Missense_Mutation p.R135L 0.21 deleterious(0) probably_damaging(1) TCGA-50-6592-01 7 127847991 127847991 G T MIR129-1 RNA 0.19 TCGA-50-6592-01 7 132470356 132470356 C G CHCHD3 3'UTR 0.21 TCGA-50-6592-01 7 137686407 137686407 G T CREB3L2 Missense_Mutation p.D15E 0.23 deleterious(0) benign(0.017) TCGA-50-6592-01 7 142836738 142836738 G T PIP 3'UTR 0.17 TCGA-50-6592-01 7 20685483 20685483 C A ABCB5 Silent p.A261A 0.27 TCGA-50-6592-01 7 56007632 56007632 G T ZNF713 Missense_Mutation p.R409L 0.20 tolerated(0.05) benign(0.261) TCGA-50-6592-01 7 66459324 66459324 T C SBDS Missense_Mutation p.K45E 0.16 deleterious(0.01) probably_damaging(0.973) TCGA-50-6592-01 7 71134995 71134995 A G WBSCR17 Silent p.R435R 0.09 TCGA-50-6592-01 7 82584974 82584974 A G PCLO Silent p.P1765P 0.08 TCGA-50-6592-01 7 86493754 86493754 C A GRM3 3'UTR 0.16 TCGA-50-6592-01 7 87104728 87104728 C T ABCB4 Silent p.E18E 0.14 TCGA-50-6592-01 7 92158152 92158152 G T RBM48 Missense_Mutation p.G9W 0.17 deleterious(0) probably_damaging(0.998) TCGA-50-6592-01 7 93555449 93555449 C A GNG11 Missense_Mutation p.S48Y 0.13 deleterious(0) possibly_damaging(0.863) TCGA-50-6592-01 7 94940832 94940832 A G PON1 Missense_Mutation p.L143S 0.08 deleterious(0) possibly_damaging(0.588) TCGA-50-6592-01 8 101020769 101020769 G A RGS22 Missense_Mutation p.S732F 0.11 deleterious(0) probably_damaging(0.999) TCGA-50-6592-01 8 113812417 113812417 G T CSMD3 Missense_Mutation p.S649Y 0.11 tolerated(0.11) probably_damaging(1) TCGA-50-6592-01 8 121457668 121457668 T A MTBP 5'UTR 0.11 TCGA-50-6592-01 8 130762329 130762329 C G GSDMC Missense_Mutation p.G374R 0.24 deleterious(0) probably_damaging(0.999) TCGA-50-6592-01 8 13357118 13357118 G T DLC1 Missense_Mutation p.Q155K 0.05 tolerated_low_confidence(0.2) benign(0.002) TCGA-50-6592-01 8 21986719 21986719 G C HR 5'UTR 0.10 TCGA-50-6592-01 8 22069310 22069310 G A BMP1 3'UTR 0.19 TCGA-50-6592-01 8 3000195 3000195 A T CSMD1 Silent p.G2011G 0.16 TCGA-50-6592-01 8 30694993 30694993 G A TEX15 Missense_Mutation p.S2553F 0.28 tolerated(0.16) benign(0.016) TCGA-50-6592-01 8 32600293 32600293 G T NRG1 Intron 0.21 TCGA-50-6592-01 8 42611772 42611772 G A CHRNA6 Silent p.I190I 0.28 TCGA-50-6592-01 8 48880031 48880031 G A MCM4 Missense_Mutation p.R387K 0.23 deleterious(0.03) benign(0.38) TCGA-50-6592-01 8 68972959 68972959 T G PREX2 Silent p.P428P 0.12 TCGA-50-6592-01 8 70585461 70585461 G T SLCO5A1 Missense_Mutation p.N730K 0.22 deleterious(0) possibly_damaging(0.73) TCGA-50-6592-01 9 101749598 101749598 T A COL15A1 Missense_Mutation p.V224E 0.19 deleterious(0) possibly_damaging(0.48) TCGA-50-6592-01 9 115933898 115933898 G A FKBP15 Missense_Mutation p.S874F 0.16 deleterious(0) benign(0.245) TCGA-50-6592-01 9 116812104 116812104 C G ZNF618 Missense_Mutation p.A748G 0.37 tolerated(0.43) benign(0) TCGA-50-6592-01 9 119382627 119382627 G A ASTN2 Silent p.A1005A 0.22 TCGA-50-6592-01 9 130536661 130536661 C A SH2D3C Missense_Mutation p.R41S 0.18 tolerated(0.96) benign(0) TCGA-50-6592-01 9 136251403 136251403 G A C9orf96 Silent p.L74L 0.07 TCGA-50-6592-01 9 136402557 136402557 G T ADAMTSL2 Missense_Mutation p.G41W 0.12 deleterious(0.01) possibly_damaging(0.664) TCGA-50-6592-01 9 140354901 140354901 G A PNPLA7 Missense_Mutation p.H1325Y 0.15 tolerated_low_confidence(0.47) benign(0.004) TCGA-50-6592-01 9 21077565 21077565 C T IFNB1 Missense_Mutation p.E102K 0.14 tolerated(0.19) benign(0.08) TCGA-50-6592-01 9 6605137 6605137 C T GLDC Silent p.Q285Q 0.12 TCGA-50-6592-01 9 74359946 74359946 C G TMEM2 Missense_Mutation p.G341A 0.25 tolerated(0.49) benign(0.068) TCGA-50-6592-01 9 77436693 77436693 A G TRPM6 Missense_Mutation p.L301P 0.27 tolerated(0.1) possibly_damaging(0.812) TCGA-50-6592-01 9 90255223 90255223 G C DAPK1 Missense_Mutation p.A214P 0.26 deleterious(0.01) probably_damaging(0.989) TCGA-50-6592-01 9 90535180 90535180 C T SPATA31C1 RNA 0.21 TCGA-50-6592-01 X 100098831 100098831 T A NOX1 3'UTR 0.18 TCGA-50-6592-01 X 105181473 105181473 T A NRK Missense_Mutation p.M1234K 0.11 deleterious(0) probably_damaging(0.964) TCGA-50-6592-01 X 122747257 122747257 C A THOC2 Missense_Mutation p.G1557V 0.05 tolerated_low_confidence(0.07) possibly_damaging(0.601) TCGA-50-6592-01 X 122747258 122747258 C T THOC2 Missense_Mutation p.G1557S 0.06 tolerated_low_confidence(0.47) benign(0.187) TCGA-50-6592-01 X 123540180 123540180 A T TENM1 Nonsense_Mutation p.Y1714* 0.11 TCGA-50-6592-01 X 123637470 123637470 C G TENM1 Missense_Mutation p.D1129H 0.29 deleterious(0.02) possibly_damaging(0.737) TCGA-50-6592-01 X 129484689 129484689 C T SLC25A14 Missense_Mutation p.P161L 0.10 deleterious(0.03) probably_damaging(0.958) TCGA-50-6592-01 X 131231335 131231335 A T FRMD7 Missense_Mutation p.F81L 0.11 deleterious(0.01) probably_damaging(0.987) TCGA-50-6592-01 X 134494262 134494262 G T ZNF449 Missense_Mutation p.W273L 0.10 tolerated(0.19) benign(0.01) TCGA-50-6592-01 X 135825773 135825773 C A ARHGEF6 Missense_Mutation p.S211I 0.13 deleterious(0) probably_damaging(0.998) TCGA-50-6592-01 X 151900849 151900849 C A MAGEA12 5'UTR 0.12 TCGA-50-6592-01 X 153220590 153220590 G T HCFC1 Missense_Mutation p.T1087N 0.08 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-50-6592-01 X 153279704 153279704 T G IRAK1 Missense_Mutation p.E443A 0.07 deleterious(0.02) possibly_damaging(0.679) TCGA-50-6592-01 X 153588197 153588197 C A FLNA Missense_Mutation p.K1294N 0.10 deleterious(0.04) benign(0.442) TCGA-50-6592-01 X 153590146 153590146 C A FLNA Missense_Mutation p.G946C 0.10 deleterious(0.02) benign(0.15) TCGA-50-6592-01 X 153663818 153663818 C A ATP6AP1 Silent p.P390P 0.14 TCGA-50-6592-01 X 26157780 26157780 G C MAGEB18 Missense_Mutation p.M226I 0.22 deleterious(0.05) possibly_damaging(0.874) TCGA-50-6592-01 X 3544473 3544473 C - PRKX Frame_Shift_Del p.D268Ifs*4 0.10 TCGA-50-6592-01 X 68381955 68381955 C T PJA1 Missense_Mutation p.R376H 0.08 tolerated(0.08) benign(0.006) TCGA-50-6592-01 X 73740833 73740833 G T SLC16A2 Nonsense_Mutation p.G147* 0.09 TCGA-50-6592-01 X 78216921 78216921 C A P2RY10 Missense_Mutation p.P302T 0.11 deleterious(0) probably_damaging(0.999) TCGA-50-6592-01 X 78216922 78216922 C A P2RY10 Missense_Mutation p.P302Q 0.11 deleterious(0) probably_damaging(0.998) TCGA-50-6592-01 X 91133114 91133114 C G PCDH11X Missense_Mutation p.I625M 0.13 deleterious(0) probably_damaging(1) TCGA-50-6593-01 10 101090479 101090479 C T CNNM1 Silent p.D445D 0.12 TCGA-50-6593-01 10 102242208 102242208 C T WNT8B Missense_Mutation p.R231C 0.10 deleterious(0) benign(0.226) TCGA-50-6593-01 10 105330655 105330655 A G NEURL1 Missense_Mutation p.T38A 0.17 tolerated_low_confidence(0.22) benign(0.001) TCGA-50-6593-01 10 118896116 118896116 C A VAX1 Missense_Mutation p.R99L 0.25 deleterious(0) unknown(0) TCGA-50-6593-01 10 125521558 125521558 G A CPXM2 Missense_Mutation p.T536M 0.12 tolerated(0.08) benign(0.117) TCGA-50-6593-01 10 16942697 16942697 C A CUBN Silent p.L2779L 0.11 TCGA-50-6593-01 10 26462618 26462618 A T MYO3A Missense_Mutation p.E1142V 0.09 deleterious(0.01) benign(0.011) TCGA-50-6593-01 10 50121502 50121502 T C LRRC18 Silent p.R233R 0.11 TCGA-50-6593-01 10 50599213 50599213 C A DRGX Missense_Mutation p.Q48H 0.17 tolerated(0.49) probably_damaging(0.966) TCGA-50-6593-01 10 58119843 58119843 C A ZWINT Missense_Mutation p.Q64H 0.19 deleterious(0.03) possibly_damaging(0.466) TCGA-50-6593-01 10 64967523 64967523 C A JMJD1C Missense_Mutation p.M1302I 0.18 tolerated(0.14) benign(0) TCGA-50-6593-01 10 75874084 75874084 G T VCL Missense_Mutation p.R1031L 0.15 deleterious(0) possibly_damaging(0.471) TCGA-50-6593-01 10 82369203 82369203 G T SH2D4B Missense_Mutation p.R294L 0.06 tolerated(0.06) benign(0.214) TCGA-50-6593-01 10 86259667 86259667 G T CCSER2 Missense_Mutation p.G788C 0.08 tolerated(0.08) possibly_damaging(0.79) TCGA-50-6593-01 10 95892185 95892185 T A PLCE1 Missense_Mutation p.F487L 0.15 tolerated_low_confidence(0.48) benign(0.003) TCGA-50-6593-01 11 102565698 102565698 C T MMP27 Missense_Mutation p.D345N 0.38 deleterious(0.02) possibly_damaging(0.887) TCGA-50-6593-01 11 103907640 103907640 C A PDGFD Intron 0.28 TCGA-50-6593-01 11 115080337 115080337 G A CADM1 Silent p.T345T 0.09 TCGA-50-6593-01 11 120097542 120097542 G A OAF Silent p.V128V 0.10 TCGA-50-6593-01 11 123894188 123894188 G T OR10G9 Missense_Mutation p.V157F 0.42 tolerated(0.35) benign(0.151) TCGA-50-6593-01 11 124761606 124761606 C A ROBO4 Missense_Mutation p.R547L 0.13 deleterious(0.01) possibly_damaging(0.878) TCGA-50-6593-01 11 124857203 124857203 C T CCDC15 Nonsense_Mutation p.Q361* 0.29 TCGA-50-6593-01 11 12886397 12886397 A G TEAD1 Missense_Mutation p.I94V 0.18 deleterious(0.04) possibly_damaging(0.519) TCGA-50-6593-01 11 130064043 130064043 G T ST14 Splice_Site p.X292_splice 0.10 TCGA-50-6593-01 11 1618918 1618918 G T KRTAP5-2 3'UTR 0.11 TCGA-50-6593-01 11 1651183 1651183 G T KRTAP5-5 Missense_Mutation p.C38F 0.12 unknown(0) TCGA-50-6593-01 11 3121425 3121425 C T OSBPL5 Silent p.E528E 0.14 TCGA-50-6593-01 11 46389247 46389247 T G DGKZ Missense_Mutation p.S295A 0.14 deleterious(0.02) benign(0.39) TCGA-50-6593-01 11 49598269 49598269 G A RP11-707M1.1 RNA 0.28 TCGA-50-6593-01 11 55111517 55111517 A G OR4A16 Missense_Mutation p.N281D 0.14 deleterious_low_confidence(0) possibly_damaging(0.881) TCGA-50-6593-01 11 56057612 56057612 G T OR8H1 Missense_Mutation p.D309E 0.12 tolerated(0.3) benign(0.001) TCGA-50-6593-01 11 56258326 56258326 T A OR5M8 Missense_Mutation p.N174I 0.17 deleterious(0) probably_damaging(0.992) TCGA-50-6593-01 11 59225048 59225048 G T OR4D6 Silent p.L205L 0.29 TCGA-50-6593-01 11 60235910 60235910 C A MS4A1 Missense_Mutation p.S288Y 0.06 tolerated(0.09) benign(0.226) TCGA-50-6593-01 11 61541490 61541490 G T MYRF Silent p.V389V 0.15 TCGA-50-6593-01 11 62488849 62488849 A T HNRNPUL2 Missense_Mutation p.L510H 0.09 deleterious(0) benign(0.239) TCGA-50-6593-01 11 64678617 64678617 C A ATG2A Silent p.T453T 0.07 TCGA-50-6593-01 11 65273655 65273655 C T MALAT1 RNA 0.33 TCGA-50-6593-01 12 104378552 104378552 G T TDG Missense_Mutation p.S273I 0.08 deleterious(0) probably_damaging(0.999) TCGA-50-6593-01 12 111290731 111290731 A T CCDC63 5'UTR 0.11 TCGA-50-6593-01 12 126138770 126138770 C G TMEM132B Missense_Mutation p.I917M 0.15 deleterious(0) possibly_damaging(0.812) TCGA-50-6593-01 12 132498101 132498101 G T EP400 Silent p.V1226V 0.22 TCGA-50-6593-01 12 132539519 132539519 G C EP400 Missense_Mutation p.A2577P 0.11 benign(0.293) TCGA-50-6593-01 12 13768141 13768141 C T GRIN2B Missense_Mutation p.E521K 0.09 deleterious(0) benign(0.349) TCGA-50-6593-01 12 21033901 21033901 C T SLCO1B3 Silent p.L482L 0.14 TCGA-50-6593-01 12 21998656 21998656 G T ABCC9 Missense_Mutation p.L993M 0.21 tolerated(0.21) benign(0.107) TCGA-50-6593-01 12 4873146 4873146 G C GALNT8 Missense_Mutation p.C509S 0.11 deleterious(0) probably_damaging(1) TCGA-50-6593-01 12 55615682 55615682 C A OR10A7 Missense_Mutation p.L292M 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-50-6593-01 12 55863608 55863608 C A OR6C70 Missense_Mutation p.L105F 0.16 tolerated_low_confidence(0.29) benign(0.02) TCGA-50-6593-01 12 57595378 57595378 G A LRP1 Missense_Mutation p.G3482S 0.13 possibly_damaging(0.825) TCGA-50-6593-01 12 62981934 62981934 A G MON2 Missense_Mutation p.N1663S 0.31 tolerated(0.73) benign(0.108) TCGA-50-6593-01 12 7585062 7585062 C A CD163L1 Missense_Mutation p.W239L 0.16 tolerated(0.17) probably_damaging(0.973) TCGA-50-6593-01 12 7967074 7967074 C A SLC2A14 Missense_Mutation p.L467F 0.15 tolerated(1) benign(0.012) TCGA-50-6593-01 12 8329650 8329650 G A ZNF705A Missense_Mutation p.C125Y 0.17 tolerated(0.29) benign(0.193) TCGA-50-6593-01 12 89860637 89860637 G C POC1B Silent p.L314L 0.22 TCGA-50-6593-01 13 21166510 21166510 C T IFT88 Missense_Mutation p.P131L 0.26 tolerated(0.09) benign(0.012) TCGA-50-6593-01 13 33018246 33018246 T A N4BP2L2 Missense_Mutation p.K143I 0.15 deleterious(0) probably_damaging(0.999) TCGA-50-6593-01 13 50042023 50042023 G C SETDB2 Missense_Mutation p.E90Q 0.10 tolerated(0.22) possibly_damaging(0.517) TCGA-50-6593-01 13 52602691 52602691 A G ALG11 Missense_Mutation p.T482A 0.27 tolerated(0.75) benign(0.001) TCGA-50-6593-01 13 58240807 58240807 T A PCDH17 Missense_Mutation p.F879L 0.30 deleterious(0.04) probably_damaging(0.995) TCGA-50-6593-01 13 84454106 84454106 C T SLITRK1 Missense_Mutation p.G513R 0.14 deleterious(0.01) possibly_damaging(0.603) TCGA-50-6593-01 13 96443247 96443247 C T DNAJC3 Missense_Mutation p.S493L 0.11 tolerated(0.1) benign(0.282) TCGA-50-6593-01 14 104490907 104490907 G T TDRD9 Missense_Mutation p.V870L 0.10 tolerated(0.13) benign(0.084) TCGA-50-6593-01 14 105418880 105418880 C A AHNAK2 Missense_Mutation p.A970S 0.15 probably_damaging(0.986) TCGA-50-6593-01 14 106829896 106829896 C T IGHV4-34 Splice_Site p.X23_splice 0.16 TCGA-50-6593-01 14 22102829 22102829 G C OR10G2 Missense_Mutation p.P57R 0.14 tolerated(0.12) benign(0.009) TCGA-50-6593-01 14 22592057 22592057 G T TRAV26-1 Nonsense_Mutation p.E48* 0.17 TCGA-50-6593-01 14 42356586 42356586 G A LRFN5 Missense_Mutation p.R253H 0.20 deleterious(0) probably_damaging(0.997) TCGA-50-6593-01 14 52509064 52509064 T A NID2 Silent p.A528A 0.18 TCGA-50-6593-01 14 52781374 52781374 G T PTGER2 Silent p.V36V 0.09 TCGA-50-6593-01 14 59112610 59112610 A G DACT1 Silent p.S423S 0.17 TCGA-50-6593-01 14 75360125 75360125 C T DLST Missense_Mutation p.R224W 0.13 deleterious(0) probably_damaging(0.995) TCGA-50-6593-01 14 92074741 92074741 T C CATSPERB Missense_Mutation p.Y869C 0.12 deleterious(0) probably_damaging(0.998) TCGA-50-6593-01 14 93118691 93118691 G T RIN3 Missense_Mutation p.G433C 0.17 tolerated(0.13) benign(0.275) TCGA-50-6593-01 14 94060029 94060029 G A UNC79 Silent p.L835L 0.16 TCGA-50-6593-01 14 94158119 94158119 C G UNC79 Missense_Mutation p.L2295V 0.17 deleterious(0) benign(0.223) TCGA-50-6593-01 14 95573988 95573988 C A DICER1 Missense_Mutation p.V921F 0.11 deleterious(0.04) benign(0.305) TCGA-50-6593-01 14 96756049 96756049 G C ATG2B Missense_Mutation p.H1984D 0.17 deleterious(0.04) benign(0.078) TCGA-50-6593-01 15 100801699 100801699 G C ADAMTS17 Missense_Mutation p.A339G 0.18 deleterious(0) probably_damaging(0.998) TCGA-50-6593-01 15 23811300 23811300 G - MKRN3 Frame_Shift_Del p.K125Rfs*46 0.18 TCGA-50-6593-01 15 33936678 33936678 C T RYR3 Silent p.L1241L 0.15 TCGA-50-6593-01 15 37187407 37187407 C A MEIS2 Missense_Mutation p.Q364H 0.11 deleterious(0) probably_damaging(0.942) TCGA-50-6593-01 15 54914534 54914534 C A UNC13C Missense_Mutation p.S2039Y 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.547) TCGA-50-6593-01 15 67473723 67473723 G A SMAD3 Missense_Mutation p.R268H 0.16 deleterious(0.03) probably_damaging(0.994) TCGA-50-6593-01 15 75816577 75816577 C G PTPN9 Missense_Mutation p.E90D 0.16 deleterious(0) probably_damaging(0.993) TCGA-50-6593-01 16 14711498 14711498 T C PARN Missense_Mutation p.I113V 0.12 deleterious(0.01) benign(0.118) TCGA-50-6593-01 16 15785148 15785148 C T NDE1 Missense_Mutation p.S224L 0.23 tolerated(0.13) benign(0.025) TCGA-50-6593-01 16 20043936 20043936 G T GPR139 Silent p.S61S 0.18 TCGA-50-6593-01 16 20043937 20043937 G T GPR139 Missense_Mutation p.S61Y 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-50-6593-01 16 20329664 20329664 C A GP2 Missense_Mutation p.G369W 0.22 deleterious(0) probably_damaging(0.999) TCGA-50-6593-01 16 20429494 20429494 G C ACSM5 Silent p.L106L 0.20 TCGA-50-6593-01 16 21696548 21696548 C T OTOA Intron 0.13 TCGA-50-6593-01 16 27802648 27802648 G A GSG1L 3'UTR 0.29 TCGA-50-6593-01 16 30583418 30583418 T A ZNF688 5'UTR 0.09 TCGA-50-6593-01 16 56913484 56913484 C T SLC12A3 Silent p.L456L 0.29 TCGA-50-6593-01 16 85712182 85712182 A G GINS2 Silent p.A132A 0.28 TCGA-50-6593-01 17 25974363 25974363 G T LGALS9 Missense_Mutation p.A276S 0.11 tolerated(0.14) possibly_damaging(0.448) TCGA-50-6593-01 17 26114746 26114746 T A NOS2 Missense_Mutation p.Q142L 0.10 tolerated(0.52) probably_damaging(0.91) TCGA-50-6593-01 17 26818601 26818601 G A SLC13A2 Missense_Mutation p.A290T 0.15 tolerated(0.88) benign(0.002) TCGA-50-6593-01 17 28656339 28656339 G A TMIGD1 Silent p.N97N 0.13 TCGA-50-6593-01 17 29562721 29562721 G - NF1 Frame_Shift_Del p.A1268Qfs*17 0.20 TCGA-50-6593-01 17 29679430 29679430 T - NF1 Frame_Shift_Del p.G2539Efs*9 0.17 TCGA-50-6593-01 17 3101096 3101096 G A OR1A2 Missense_Mutation p.G95E 0.20 tolerated(0.2) benign(0.018) TCGA-50-6593-01 17 3324736 3324736 C A OR3A3 Missense_Mutation p.P292H 0.33 deleterious(0) probably_damaging(0.999) TCGA-50-6593-01 17 3324737 3324737 C A OR3A3 Silent p.P292P 0.33 TCGA-50-6593-01 17 33510508 33510508 G T UNC45B Silent p.G814G 0.13 TCGA-50-6593-01 17 39567724 39567724 G A AC003958.2 RNA 0.15 TCGA-50-6593-01 17 39658830 39658830 T A KRT13 Missense_Mutation p.N347I 0.10 deleterious(0) possibly_damaging(0.449) TCGA-50-6593-01 17 39739908 39739908 C T KRT14 Silent p.E316E 0.18 TCGA-50-6593-01 17 40933017 40933017 A G WNK4 Missense_Mutation p.S101G 0.27 tolerated_low_confidence(0.1) unknown(0) TCGA-50-6593-01 17 41251814 41251814 C A BRCA1 Missense_Mutation p.K175N 0.15 tolerated(1) benign(0) TCGA-50-6593-01 17 51901824 51901824 C T KIF2B Missense_Mutation p.A477V 0.16 deleterious(0.01) benign(0.269) TCGA-50-6593-01 17 60351180 60351180 G T TBC1D3P2 RNA 0.23 TCGA-50-6593-01 17 7577609 7577609 C G TP53 Splice_Site p.X225_splice 0.42 TCGA-50-6593-01 17 77987181 77987181 C A TBC1D16 Missense_Mutation p.G56W 0.12 tolerated(0.11) probably_damaging(0.986) TCGA-50-6593-01 18 14852116 14852116 G T ANKRD30B Missense_Mutation p.Q1272H 0.19 deleterious(0.02) probably_damaging(0.977) TCGA-50-6593-01 18 22775175 22775175 C A ZNF521 Missense_Mutation p.V1203F 0.18 deleterious(0.01) benign(0.242) TCGA-50-6593-01 18 22775176 22775176 C A ZNF521 Missense_Mutation p.M1202I 0.18 deleterious(0.03) benign(0) TCGA-50-6593-01 18 24722714 24722714 A T CHST9 Missense_Mutation p.F20L 0.11 deleterious(0) probably_damaging(0.997) TCGA-50-6593-01 18 24722715 24722715 A C CHST9 Missense_Mutation p.F20C 0.11 deleterious(0) probably_damaging(0.999) TCGA-50-6593-01 18 24722716 24722716 A T CHST9 Missense_Mutation p.F20I 0.11 deleterious(0) probably_damaging(0.998) TCGA-50-6593-01 18 31323961 31323961 C T ASXL3 Silent p.A1383A 0.13 TCGA-50-6593-01 18 34310681 34310681 G T FHOD3 Missense_Mutation p.G989C 0.13 deleterious(0) probably_damaging(0.987) TCGA-50-6593-01 18 34335226 34335226 G T FHOD3 Silent p.R1284R 0.19 TCGA-50-6593-01 19 11978562 11978562 C T ZNF439 Silent p.L226L 0.15 TCGA-50-6593-01 19 22847981 22847981 C T ZNF492 Missense_Mutation p.L504F 0.36 tolerated(0.07) benign(0) TCGA-50-6593-01 19 36380905 36380905 C A NFKBID Missense_Mutation p.A259S 0.29 tolerated(0.64) benign(0.002) TCGA-50-6593-01 19 39959770 39959770 C T SUPT5H Nonsense_Mutation p.Q399* 0.19 TCGA-50-6593-01 19 45175887 45175887 G T CEACAM19 Missense_Mutation p.W25C 0.30 tolerated(0.05) benign(0.289) TCGA-50-6593-01 19 47845055 47845055 G T C5AR2 Silent p.S333S 0.08 TCGA-50-6593-01 19 50245161 50245161 C A TSKS Missense_Mutation p.R493M 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-50-6593-01 19 50475331 50475331 C T VRK3 3'Flank 0.14 TCGA-50-6593-01 19 52033116 52033116 C T SIGLEC6 Missense_Mutation p.A292T 0.15 tolerated(1) benign(0.039) TCGA-50-6593-01 19 54745485 54745485 G T LILRA6 Missense_Mutation p.H209N 0.18 tolerated(0.49) benign(0.001) TCGA-50-6593-01 19 55143393 55143393 C G LILRB1 Nonsense_Mutation p.Y122* 0.08 TCGA-50-6593-01 19 57327625 57327625 T C PEG3 Missense_Mutation p.T729A 0.34 tolerated(0.41) benign(0.059) TCGA-50-6593-01 19 57868358 57868358 G C ZNF304 Missense_Mutation p.R374P 0.26 deleterious(0.04) probably_damaging(0.965) TCGA-50-6593-01 19 7965609 7965609 G A LRRC8E Silent p.L734L 0.13 TCGA-50-6593-01 19 9048033 9048033 C A MUC16 Missense_Mutation p.V11200F 0.38 possibly_damaging(0.683) TCGA-50-6593-01 19 9087382 9087382 C T MUC16 Missense_Mutation p.S1478N 0.16 unknown(0) TCGA-50-6593-01 1 110050444 110050444 T C AMIGO1 Missense_Mutation p.H364R 0.12 tolerated(0.58) benign(0.001) TCGA-50-6593-01 1 111145816 111145816 A G KCNA2 3'UTR 0.23 TCGA-50-6593-01 1 12919770 12919770 G T PRAMEF2 Missense_Mutation p.W170C 0.25 deleterious(0) probably_damaging(0.999) TCGA-50-6593-01 1 144882871 144882871 G T PDE4DIP Missense_Mutation p.L1050M 0.07 deleterious(0) probably_damaging(1) TCGA-50-6593-01 1 144915608 144915608 C A PDE4DIP Missense_Mutation p.G606V 0.16 tolerated(0.08) benign(0.379) TCGA-50-6593-01 1 150039930 150039930 G T VPS45 Missense_Mutation p.A6S 0.26 tolerated(0.07) benign(0.21) TCGA-50-6593-01 1 152286898 152286898 C A FLG Missense_Mutation p.S155I 0.15 possibly_damaging(0.802) TCGA-50-6593-01 1 152748857 152748857 C A LCE1F Missense_Mutation p.Q4K 0.12 deleterious_low_confidence(0) unknown(0) TCGA-50-6593-01 1 155261655 155261655 G - PKLR Frame_Shift_Del p.R504Afs*26 0.17 TCGA-50-6593-01 1 156354339 156354339 T G RHBG Missense_Mutation p.F419C 0.21 tolerated(0.06) benign(0.004) TCGA-50-6593-01 1 159557666 159557666 C A APCS 5'UTR 0.06 TCGA-50-6593-01 1 160125911 160125911 C T ATP1A4 Missense_Mutation p.S163F 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-50-6593-01 1 160535531 160535531 C A CD84 Silent p.P17P 0.09 TCGA-50-6593-01 1 161680999 161680999 C A FCRLA Missense_Mutation p.D101E 0.14 tolerated(0.09) probably_damaging(1) TCGA-50-6593-01 1 168511287 168511287 C T XCL2 Silent p.L40L 0.12 TCGA-50-6593-01 1 168549359 168549359 G A XCL1 Silent p.L40L 0.10 TCGA-50-6593-01 1 17331296 17331296 G A ATP13A2 Missense_Mutation p.S123F 0.14 deleterious(0.04) benign(0.003) TCGA-50-6593-01 1 173703228 173703228 G A KLHL20 Missense_Mutation p.E134K 0.12 tolerated(0.44) possibly_damaging(0.755) TCGA-50-6593-01 1 175355420 175355420 G C TNR Missense_Mutation p.Q509E 0.12 deleterious(0.01) benign(0.155) TCGA-50-6593-01 1 175365934 175365934 G C TNR Missense_Mutation p.P329R 0.21 deleterious(0) probably_damaging(0.985) TCGA-50-6593-01 1 17666217 17666217 G A PADI4 Silent p.T187T 0.18 TCGA-50-6593-01 1 176762718 176762718 T C PAPPA2 Silent p.C1681C 0.16 TCGA-50-6593-01 1 179013192 179013192 G A FAM20B Nonsense_Mutation p.W70* 0.14 TCGA-50-6593-01 1 17991008 17991008 C G ARHGEF10L Missense_Mutation p.T976S 0.23 tolerated(1) benign(0.001) TCGA-50-6593-01 1 190423887 190423887 T C BRINP3 Missense_Mutation p.D45G 0.15 tolerated(0.17) probably_damaging(0.977) TCGA-50-6593-01 1 196227445 196227445 A C KCNT2 Silent p.G1030G 0.10 TCGA-50-6593-01 1 197059495 197059495 C A ASPM Missense_Mutation p.W3220C 0.13 tolerated(0.22) probably_damaging(0.987) TCGA-50-6593-01 1 197112565 197112565 C A ASPM Nonsense_Mutation p.E273* 0.12 TCGA-50-6593-01 1 197390222 197390222 C T CRB1 Missense_Mutation p.H422Y 0.20 deleterious(0) probably_damaging(0.944) TCGA-50-6593-01 1 200960801 200960801 C T KIF21B Missense_Mutation p.R813K 0.15 tolerated(0.27) benign(0.122) TCGA-50-6593-01 1 200969654 200969654 G C KIF21B Missense_Mutation p.L517V 0.09 tolerated(0.51) benign(0.001) TCGA-50-6593-01 1 201187763 201187763 C A IGFN1 Missense_Mutation p.A3292D 0.24 probably_damaging(0.996) TCGA-50-6593-01 1 207649641 207649641 G T CR2 Missense_Mutation p.A927S 0.05 tolerated(0.53) benign(0.034) TCGA-50-6593-01 1 208270154 208270154 C A PLXNA2 Silent p.V602V 0.20 TCGA-50-6593-01 1 212976051 212976051 T A TATDN3 Missense_Mutation p.D89E 0.14 tolerated(0.54) benign(0) TCGA-50-6593-01 1 223465926 223465926 T C SUSD4 Silent p.G72G 0.12 TCGA-50-6593-01 1 228362874 228362874 A T IBA57 Missense_Mutation p.E244V 0.10 deleterious(0) probably_damaging(0.999) TCGA-50-6593-01 1 228879403 228879403 G T RHOU Missense_Mutation p.Q231H 0.14 tolerated(0.06) benign(0.01) TCGA-50-6593-01 1 237813179 237813179 A G RYR2 Silent p.A2505A 0.09 TCGA-50-6593-01 1 237921011 237921011 A T RYR2 Missense_Mutation p.M3754L 0.16 benign(0.206) TCGA-50-6593-01 1 2420731 2420731 G A PLCH2 Missense_Mutation p.D414N 0.19 deleterious(0.04) possibly_damaging(0.668) TCGA-50-6593-01 1 248458344 248458344 G C OR2T12 Silent p.A179A 0.18 TCGA-50-6593-01 1 248487249 248487249 C T OR2M7 Missense_Mutation p.V208I 0.22 tolerated(0.1) benign(0.006) TCGA-50-6593-01 1 248487840 248487840 C T OR2M7 Missense_Mutation p.D11N 0.14 tolerated(0.1) benign(0.012) TCGA-50-6593-01 1 248737926 248737926 T A OR2T34 Missense_Mutation p.T45S 0.10 tolerated(0.89) benign(0.039) TCGA-50-6593-01 1 55472787 55472787 C T BSND Silent p.S130S 0.09 TCGA-50-6593-01 1 62740490 62740490 G T KANK4 Missense_Mutation p.P96T 0.14 deleterious(0.03) benign(0.013) TCGA-50-6593-01 1 74507380 74507380 C T LRRIQ3 Missense_Mutation p.R412K 0.30 tolerated(0.24) benign(0.01) TCGA-50-6593-01 1 75086594 75086594 G C C1orf173 Nonsense_Mutation p.S275* 0.09 TCGA-50-6593-01 1 78425923 78425923 G A FUBP1 Nonsense_Mutation p.Q508* 0.14 TCGA-50-6593-01 20 1551451 1551451 C A SIRPB1 Nonsense_Mutation p.E362* 0.27 TCGA-50-6593-01 20 36869019 36869019 G T KIAA1755 Missense_Mutation p.S505Y 0.32 deleterious(0) probably_damaging(0.935) TCGA-50-6593-01 20 45702913 45702913 C A EYA2 Silent p.S200S 0.32 TCGA-50-6593-01 20 56099046 56099046 C G CTCFL Silent p.S72S 0.35 TCGA-50-6593-01 20 61910347 61910347 G T ARFGAP1 Silent p.S209S 0.29 TCGA-50-6593-01 20 9496758 9496758 C A LAMP5 Missense_Mutation p.L117I 0.44 deleterious(0.01) possibly_damaging(0.905) TCGA-50-6593-01 21 32253584 32253584 C G KRTAP11-1 Missense_Mutation p.R87P 0.08 tolerated(0.11) probably_damaging(0.996) TCGA-50-6593-01 21 32537365 32537365 C A TIAM1 Nonsense_Mutation p.E969* 0.10 TCGA-50-6593-01 21 47423462 47423462 G T COL6A1 Silent p.A874A 0.27 TCGA-50-6593-01 22 23213997 23213997 A T IGLV4-3 Missense_Mutation p.I52F 0.11 deleterious(0) possibly_damaging(0.724) TCGA-50-6593-01 22 26747161 26747161 C A SEZ6L Missense_Mutation p.R851S 0.32 deleterious(0.01) possibly_damaging(0.611) TCGA-50-6593-01 22 50485615 50485615 T A TTLL8 Silent p.T161T 0.17 TCGA-50-6593-01 2 10917755 10917755 G A ATP6V1C2 Silent p.P290P 0.30 TCGA-50-6593-01 2 130832641 130832641 G T POTEF Missense_Mutation p.P802T 0.28 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-50-6593-01 2 138163308 138163308 G T THSD7B Missense_Mutation p.A876S 0.27 tolerated(1) possibly_damaging(0.567) TCGA-50-6593-01 2 140995720 140995720 C G LRP1B Splice_Site p.X4520_splice 0.10 TCGA-50-6593-01 2 141641581 141641581 G T LRP1B Missense_Mutation p.A1325D 0.20 benign(0.007) TCGA-50-6593-01 2 15427279 15427279 C A NBAS Missense_Mutation p.A1686S 0.13 tolerated(0.3) benign(0.098) TCGA-50-6593-01 2 166164446 166164446 G C SCN2A Missense_Mutation p.E159Q 0.17 deleterious(0) benign(0.089) TCGA-50-6593-01 2 166533101 166533101 G A CSRNP3 Missense_Mutation p.A230T 0.06 deleterious(0) probably_damaging(0.995) TCGA-50-6593-01 2 166535484 166535484 G A CSRNP3 Missense_Mutation p.V327M 0.30 deleterious(0.01) possibly_damaging(0.51) TCGA-50-6593-01 2 167759983 167759983 G T XIRP2 5'UTR 0.08 TCGA-50-6593-01 2 170127535 170127535 C T LRP2 Missense_Mutation p.M733I 0.10 benign(0.002) TCGA-50-6593-01 2 176981647 176981647 C A HOXD10 Missense_Mutation p.S29Y 0.29 tolerated(0.34) probably_damaging(0.994) TCGA-50-6593-01 2 179449532 179449532 A C TTN Silent p.A21612A 0.11 TCGA-50-6593-01 2 179582535 179582535 G C TTN Missense_Mutation p.R8356G 0.12 TCGA-50-6593-01 2 182780208 182780208 C T SSFA2 Missense_Mutation p.P614L 0.15 tolerated(0.23) benign(0.059) TCGA-50-6593-01 2 183291392 183291392 A G PDE1A Intron 0.29 TCGA-50-6593-01 2 189870978 189870978 G T COL3A1 Missense_Mutation p.G1029V 0.14 probably_damaging(0.999) TCGA-50-6593-01 2 189923181 189923181 C G COL5A2 Missense_Mutation p.G735R 0.24 unknown(0) TCGA-50-6593-01 2 191301129 191301129 C T MFSD6 Missense_Mutation p.A125V 0.29 deleterious(0) probably_damaging(0.946) TCGA-50-6593-01 2 196825191 196825191 G T DNAH7 Missense_Mutation p.A895D 0.14 deleterious(0) probably_damaging(1) TCGA-50-6593-01 2 197674027 197674027 C A C2orf66 Missense_Mutation p.A29S 0.11 tolerated(0.26) possibly_damaging(0.499) TCGA-50-6593-01 2 202671456 202671456 C A CDK15 Silent p.G23G 0.14 TCGA-50-6593-01 2 206364739 206364739 A T PARD3B Missense_Mutation p.E993V 0.21 deleterious(0) benign(0.28) TCGA-50-6593-01 2 207452814 207452814 G T ADAM23 Splice_Site p.X597_splice 0.24 TCGA-50-6593-01 2 220396524 220396524 G T ASIC4 Silent p.P336P 0.25 TCGA-50-6593-01 2 26683600 26683600 C A OTOF Nonsense_Mutation p.E1910* 0.15 TCGA-50-6593-01 2 27292958 27292958 A T AGBL5 Splice_Site p.X830_splice 0.14 TCGA-50-6593-01 2 31178519 31178519 C - GALNT14 Frame_Shift_Del p.D212Tfs*21 0.22 TCGA-50-6593-01 2 31611101 31611101 C A XDH Missense_Mutation p.D186Y 0.11 deleterious(0) benign(0.172) TCGA-50-6593-01 2 37227729 37227729 C A HEATR5B Nonsense_Mutation p.E1849* 0.07 TCGA-50-6593-01 2 42284449 42284449 G T PKDCC Silent p.V437V 0.07 TCGA-50-6593-01 2 42883392 42883392 A T MTA3 Silent p.P184P 0.25 TCGA-50-6593-01 2 48066010 48066010 T A FBXO11 Missense_Mutation p.D192V 0.21 deleterious(0) possibly_damaging(0.787) TCGA-50-6593-01 2 55894127 55894127 T A PNPT1 Missense_Mutation p.Q392L 0.12 deleterious(0) possibly_damaging(0.67) TCGA-50-6593-01 2 71839888 71839888 C T DYSF Silent p.L1447L 0.24 TCGA-50-6593-01 2 84775457 84775457 A G DNAH6 Missense_Mutation p.H411R 0.12 tolerated(0.34) benign(0) TCGA-50-6593-01 2 9540191 9540191 G T ASAP2 Silent p.P908P 0.08 TCGA-50-6593-01 2 95953996 95953996 G T PROM2 Missense_Mutation p.G761V 0.10 tolerated(0.35) possibly_damaging(0.732) TCGA-50-6593-01 3 10444022 10444022 C G ATP2B2 Silent p.T136T 0.29 TCGA-50-6593-01 3 122003983 122003983 G A CASR Missense_Mutation p.S1071N 0.29 tolerated_low_confidence(0.35) benign(0.001) TCGA-50-6593-01 3 155199813 155199813 C A PLCH1 Missense_Mutation p.E1342D 0.09 tolerated_low_confidence(0.12) benign(0.005) TCGA-50-6593-01 3 160395577 160395577 A G ARL14 Missense_Mutation p.D148G 0.28 tolerated(0.35) possibly_damaging(0.806) TCGA-50-6593-01 3 164766917 164766917 C A SI Missense_Mutation p.E571D 0.09 tolerated(0.56) benign(0.001) TCGA-50-6593-01 3 42949613 42949613 G A ZNF662 Missense_Mutation p.E64K 0.20 deleterious(0) benign(0.254) TCGA-50-6593-01 3 48646610 48646610 A G UQCRC1 Silent p.S65S 0.41 TCGA-50-6593-01 3 49699759 49699759 G T BSN Missense_Mutation p.R3494L 0.12 unknown(0) TCGA-50-6593-01 3 51897392 51897392 G - IQCF2 3'UTR 0.16 TCGA-50-6593-01 3 74350822 74350822 C A CNTN3 Missense_Mutation p.V641L 0.29 tolerated(0.54) benign(0.182) TCGA-50-6593-01 3 74350861 74350861 C G CNTN3 Missense_Mutation p.V628L 0.15 deleterious(0.03) benign(0.137) TCGA-50-6593-01 3 9032338 9032338 G A SRGAP3 Missense_Mutation p.A915V 0.29 tolerated(0.06) benign(0.035) TCGA-50-6593-01 4 106534548 106534549 - TATC ARHGEF38 Frame_Shift_Ins p.R131Sfs*7 0.11 TCGA-50-6593-01 4 120170029 120170029 G T USP53 Nonsense_Mutation p.E122* 0.09 TCGA-50-6593-01 4 128584607 128584607 G A INTU Silent p.Q280Q 0.38 TCGA-50-6593-01 4 13588025 13588025 T A BOD1L1 Missense_Mutation p.T2810S 0.29 benign(0.114) TCGA-50-6593-01 4 155155902 155155902 A G DCHS2 Missense_Mutation p.L2846P 0.09 tolerated(0.38) benign(0.001) TCGA-50-6593-01 4 167022109 167022109 A G TLL1 3'UTR 0.33 TCGA-50-6593-01 4 167022111 167022111 A G TLL1 3'UTR 0.30 TCGA-50-6593-01 4 175443105 175443105 T C HPGD Silent p.Q69Q 0.10 TCGA-50-6593-01 4 177061073 177061073 T A WDR17 Missense_Mutation p.W488R 0.14 deleterious(0) probably_damaging(1) TCGA-50-6593-01 4 20597397 20597397 A C SLIT2 Missense_Mutation p.N1087T 0.09 deleterious(0) possibly_damaging(0.676) TCGA-50-6593-01 4 23814445 23814445 T G PPARGC1A Missense_Mutation p.E648D 0.08 tolerated(0.13) unknown(0) TCGA-50-6593-01 4 30725632 30725632 A T PCDH7 Missense_Mutation p.Q863L 0.24 tolerated(0.37) benign(0.003) TCGA-50-6593-01 4 437409 437409 C A ZNF721 Missense_Mutation p.G283C 0.09 deleterious(0) probably_damaging(1) TCGA-50-6593-01 4 48381723 48381723 A G SLAIN2 Silent p.S240S 0.14 TCGA-50-6593-01 4 68934421 68934421 G T TMPRSS11F Missense_Mutation p.L224I 0.13 tolerated(0.18) probably_damaging(0.999) TCGA-50-6593-01 4 69197847 69197847 C A YTHDC1 Nonsense_Mutation p.E366* 0.16 TCGA-50-6593-01 4 70160247 70160247 G C UGT2B28 Splice_Site p.X437_splice 0.14 TCGA-50-6593-01 4 71347269 71347269 G T MUC7 Missense_Mutation p.D270Y 0.12 tolerated_low_confidence(0.06) unknown(0) TCGA-50-6593-01 4 77305770 77305770 T C CCDC158 Missense_Mutation p.I113V 0.23 tolerated(0.28) possibly_damaging(0.811) TCGA-50-6593-01 4 79373507 79373507 A T FRAS1 Silent p.P2254P 0.19 TCGA-50-6593-01 4 85660237 85660237 C A WDFY3 Missense_Mutation p.R2167L 0.13 deleterious(0.04) benign(0.032) TCGA-50-6593-01 4 8616159 8616159 C T CPZ Silent p.P479P 0.16 TCGA-50-6593-01 4 88766342 88766342 A T MEPE Missense_Mutation p.T108S 0.27 tolerated(0.24) benign(0.05) TCGA-50-6593-01 5 108717348 108717348 T C PJA2 Missense_Mutation p.T30A 0.11 tolerated(0.07) probably_damaging(0.999) TCGA-50-6593-01 5 135692916 135692916 C A TRPC7 Missense_Mutation p.G54C 0.12 deleterious(0) probably_damaging(1) TCGA-50-6593-01 5 138718265 138718265 C T SLC23A1 Silent p.P22P 0.05 TCGA-50-6593-01 5 140215949 140215949 G A PCDHA7 Missense_Mutation p.A661T 0.19 tolerated_low_confidence(0.06) benign(0.411) TCGA-50-6593-01 5 140256413 140256413 G T PCDHA12 Silent p.A452A 0.16 TCGA-50-6593-01 5 140431512 140431512 C T PCDHB1 Missense_Mutation p.P153S 0.21 tolerated(0.08) probably_damaging(0.999) TCGA-50-6593-01 5 140482154 140482154 G A PCDHB3 Missense_Mutation p.V641M 0.09 deleterious_low_confidence(0.02) benign(0.41) TCGA-50-6593-01 5 140537221 140537221 C A PCDHB17 Missense_Mutation p.R549S 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.796) TCGA-50-6593-01 5 140594897 140594897 A G PCDHB13 Missense_Mutation p.Y401C 0.11 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-50-6593-01 5 14364019 14364019 A G TRIO Missense_Mutation p.N857S 0.09 benign(0.062) TCGA-50-6593-01 5 156592624 156592624 G T FAM71B Missense_Mutation p.P186T 0.15 tolerated(0.37) benign(0.261) TCGA-50-6593-01 5 160061467 160061467 G T ATP10B Silent p.G425G 0.18 TCGA-50-6593-01 5 169186763 169186763 G C DOCK2 Missense_Mutation p.D811H 0.13 deleterious(0) probably_damaging(0.973) TCGA-50-6593-01 5 169446013 169446013 G A DOCK2 Silent p.E1094E 0.14 TCGA-50-6593-01 5 178541268 178541268 T C ADAMTS2 Missense_Mutation p.Y1079C 0.18 deleterious(0) probably_damaging(0.982) TCGA-50-6593-01 5 180419856 180419856 G T BTNL3 Missense_Mutation p.L31F 0.32 tolerated(0.17) possibly_damaging(0.884) TCGA-50-6593-01 5 23526524 23526524 G A PRDM9 Missense_Mutation p.D443N 0.06 tolerated(0.18) possibly_damaging(0.611) TCGA-50-6593-01 5 23526569 23526569 G T PRDM9 Nonsense_Mutation p.E458* 0.09 TCGA-50-6593-01 5 23526586 23526586 G A PRDM9 Silent p.L463L 0.08 TCGA-50-6593-01 5 23526601 23526601 G A PRDM9 Nonsense_Mutation p.W468* 0.08 TCGA-50-6593-01 5 24487942 24487942 G T CDH10 Missense_Mutation p.L733I 0.06 tolerated(0.19) probably_damaging(0.973) TCGA-50-6593-01 5 35874576 35874576 C A IL7R Silent p.T244T 0.03 TCGA-50-6593-01 5 38949913 38949913 G C RICTOR Missense_Mutation p.S1346C 0.05 deleterious(0.02) possibly_damaging(0.9) TCGA-50-6593-01 5 41142965 41142965 T G C6 Missense_Mutation p.K923Q 0.05 tolerated(0.11) possibly_damaging(0.548) TCGA-50-6593-01 5 53751553 53751553 C A HSPB3 5'UTR 0.17 TCGA-50-6593-01 5 53814525 53814525 C T SNX18 Missense_Mutation p.A248V 0.12 tolerated(0.47) benign(0.126) TCGA-50-6593-01 5 5486895 5486895 G T KIAA0947 Silent p.S2194S 0.72 TCGA-50-6593-01 6 131943063 131943063 T A MED23 Silent p.T151T 0.18 TCGA-50-6593-01 6 133073886 133073886 G C VNN2 Nonsense_Mutation p.Y180* 0.10 TCGA-50-6593-01 6 139598001 139598001 T A TXLNB Missense_Mutation p.K161M 0.11 deleterious(0) probably_damaging(1) TCGA-50-6593-01 6 146480615 146480615 C A GRM1 Silent p.R278R 0.11 TCGA-50-6593-01 6 16328216 16328216 G A ATXN1 Missense_Mutation p.P109L 0.18 deleterious(0.01) benign(0.058) TCGA-50-6593-01 6 17292081 17292081 C A RBM24 Missense_Mutation p.P148T 0.12 deleterious(0.01) probably_damaging(0.96) TCGA-50-6593-01 6 30309955 30309955 G T TRIM39 Missense_Mutation p.W492C 0.19 deleterious(0.01) probably_damaging(0.994) TCGA-50-6593-01 6 37186304 37186304 C G TMEM217 Missense_Mutation p.R168P 0.15 deleterious(0.02) possibly_damaging(0.596) TCGA-50-6593-01 6 43018826 43018826 C G CUL7 Missense_Mutation p.L455F 0.33 deleterious(0.04) possibly_damaging(0.564) TCGA-50-6593-01 6 43307502 43307502 C T ZNF318 Missense_Mutation p.G1412R 0.15 probably_damaging(1) TCGA-50-6593-01 6 46660740 46660740 G C TDRD6 Silent p.L1625L 0.21 TCGA-50-6593-01 6 55932126 55932126 C A COL21A1 Silent p.G698G 0.12 TCGA-50-6593-01 6 56472096 56472096 A G DST Intron 0.25 TCGA-50-6593-01 6 57398139 57398139 C T PRIM2 Missense_Mutation p.T281I 0.11 tolerated(0.32) benign(0.005) TCGA-50-6593-01 6 80838877 80838877 G T BCKDHB Splice_Site p.X92_splice 0.22 TCGA-50-6593-01 7 100683669 100683669 G C MUC17 Missense_Mutation p.S2991T 0.15 probably_damaging(0.942) TCGA-50-6593-01 7 111535708 111535708 C T DOCK4 Missense_Mutation p.R516K 0.22 tolerated(0.07) possibly_damaging(0.81) TCGA-50-6593-01 7 11447019 11447019 G T THSD7A Missense_Mutation p.T1277K 0.16 tolerated(0.82) benign(0.051) TCGA-50-6593-01 7 117417770 117417770 C G CTTNBP2 Missense_Mutation p.S858T 0.12 tolerated(0.65) benign(0.102) TCGA-50-6593-01 7 117432194 117432194 G T CTTNBP2 Silent p.A352A 0.10 TCGA-50-6593-01 7 120765938 120765938 G T CPED1 Missense_Mutation p.V376L 0.13 deleterious(0.01) benign(0.006) TCGA-50-6593-01 7 121651909 121651909 C TA PTPRZ1 Nonsense_Mutation p.Q937* 0.19 TCGA-50-6593-01 7 122338345 122338345 T C RNF133 Missense_Mutation p.I210V 0.13 tolerated(0.5) benign(0.401) TCGA-50-6593-01 7 138967913 138967913 C A UBN2 Missense_Mutation p.D754E 0.06 deleterious(0) probably_damaging(0.984) TCGA-50-6593-01 7 142161986 142161986 G T TRBV6-6 Missense_Mutation p.L97M 0.36 deleterious(0.03) possibly_damaging(0.891) TCGA-50-6593-01 7 144015559 144015559 G A OR2A1 Silent p.L114L 0.10 TCGA-50-6593-01 7 150325428 150325428 C A GIMAP6 Missense_Mutation p.W86C 0.14 deleterious(0) probably_damaging(0.999) TCGA-50-6593-01 7 150439764 150439764 G T GIMAP5 Missense_Mutation p.E179D 0.06 deleterious(0.01) probably_damaging(0.986) TCGA-50-6593-01 7 27237756 27237756 G T HOXA13 3'UTR 0.20 TCGA-50-6593-01 7 30492353 30492353 C A NOD1 Missense_Mutation p.G227V 0.07 tolerated(0.17) benign(0.424) TCGA-50-6593-01 7 30544351 30544351 C A GGCT 5'UTR 0.27 TCGA-50-6593-01 7 35242211 35242211 C T TBX20 Missense_Mutation p.R392Q 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.543) TCGA-50-6593-01 7 38937702 38937702 C T VPS41 Missense_Mutation p.D17N 0.05 deleterious(0.01) probably_damaging(0.956) TCGA-50-6593-01 7 39736360 39736360 A G RALA Missense_Mutation p.K134E 0.24 tolerated(1) benign(0.049) TCGA-50-6593-01 7 45104118 45104118 G C CCM2 Silent p.L136L 0.20 TCGA-50-6593-01 7 48146550 48146550 G T UPP1 Missense_Mutation p.G173W 0.12 deleterious(0) probably_damaging(0.999) TCGA-50-6593-01 7 4965100 4965100 G T MMD2 Silent p.A37A 0.08 TCGA-50-6593-01 7 54610349 54610349 C A VSTM2A 5'UTR 0.21 TCGA-50-6593-01 7 64167304 64167304 A T ZNF107 Missense_Mutation p.I208L 0.11 tolerated(0.07) benign(0.05) TCGA-50-6593-01 7 65610483 65610483 A T CRCP Missense_Mutation p.Q98L 0.11 deleterious(0) possibly_damaging(0.824) TCGA-50-6593-01 7 87133638 87133638 C A ABCB1 Missense_Mutation p.G1255V 0.16 deleterious(0) probably_damaging(0.985) TCGA-50-6593-01 7 96650229 96650229 G C DLX5 Missense_Mutation p.S230C 0.18 deleterious(0.01) benign(0.174) TCGA-50-6593-01 8 104897787 104897787 C G RIMS2 Nonsense_Mutation p.Y320* 0.27 TCGA-50-6593-01 8 114326964 114326964 A T CSMD3 Silent p.P79P 0.09 TCGA-50-6593-01 8 114448956 114448956 C A CSMD3 Missense_Mutation p.G43V 0.10 deleterious_low_confidence(0.04) benign(0.001) TCGA-50-6593-01 8 119936780 119936780 G T TNFRSF11B Missense_Mutation p.H347N 0.19 tolerated(0.08) benign(0.02) TCGA-50-6593-01 8 125052164 125052164 C A FER1L6 Silent p.R836R 0.21 TCGA-50-6593-01 8 133053357 133053357 C A OC90 Missense_Mutation p.D131Y 0.20 deleterious(0) probably_damaging(0.982) TCGA-50-6593-01 8 139180172 139180172 G C FAM135B Missense_Mutation p.I408M 0.14 deleterious(0) probably_damaging(0.999) TCGA-50-6593-01 8 139209829 139209829 A T FAM135B Silent p.A251A 0.10 TCGA-50-6593-01 8 143559682 143559682 T A BAI1 Missense_Mutation p.W508R 0.26 deleterious(0.02) possibly_damaging(0.86) TCGA-50-6593-01 8 143921845 143921845 C A GML 5'UTR 0.10 TCGA-50-6593-01 8 144620288 144620288 C A ZC3H3 Missense_Mutation p.G417W 0.07 deleterious(0.01) probably_damaging(0.924) TCGA-50-6593-01 8 144621362 144621362 G C ZC3H3 Missense_Mutation p.R59G 0.32 deleterious(0.02) probably_damaging(0.986) TCGA-50-6593-01 8 145065687 145065687 A T GRINA Missense_Mutation p.Y99F 0.29 tolerated(0.34) unknown(0) TCGA-50-6593-01 8 17942257 17942257 G C ASAH1 Silent p.S18S 0.27 TCGA-50-6593-01 8 24342845 24342845 C A ADAM7 Missense_Mutation p.L311M 0.16 tolerated(0.16) probably_damaging(0.975) TCGA-50-6593-01 8 26513217 26513217 G T DPYSL2 Missense_Mutation p.G572C 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-50-6593-01 8 30694594 30694594 A T TEX15 Missense_Mutation p.V2686E 0.18 tolerated(0.1) benign(0.011) TCGA-50-6593-01 8 57876276 57876276 C A IMPAD1 3'UTR 0.16 TCGA-50-6593-01 8 66963858 66963858 C T DNAJC5B Silent p.L26L 0.09 TCGA-50-6593-01 8 72973915 72973915 C A TRPA1 Missense_Mutation p.G297C 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-50-6593-01 8 82437306 82437306 G T FABP12 Nonsense_Mutation p.S133* 0.20 TCGA-50-6593-01 8 89209452 89209452 G T MMP16 Silent p.A72A 0.11 TCGA-50-6593-01 8 92999139 92999139 T G RUNX1T1 Silent p.A362A 0.06 TCGA-50-6593-01 8 95531312 95531312 T A KIAA1429 Missense_Mutation p.N805I 0.40 deleterious(0.01) possibly_damaging(0.463) TCGA-50-6593-01 9 119976834 119976834 A T ASTN2 Missense_Mutation p.L273Q 0.11 tolerated_low_confidence(0.15) unknown(0) TCGA-50-6593-01 9 130586661 130586661 C G ENG Silent p.P352P 0.24 TCGA-50-6593-01 9 131670205 131670205 G T LRRC8A Silent p.V254V 0.15 TCGA-50-6593-01 9 134454756 134454756 G A RAPGEF1 3'UTR 0.22 TCGA-50-6593-01 9 32635336 32635336 G T TAF1L Missense_Mutation p.T81K 0.19 tolerated(0.08) probably_damaging(0.996) TCGA-50-6593-01 9 5772720 5772720 A C KIAA1432 Missense_Mutation p.H1258P 0.22 tolerated(0.32) possibly_damaging(0.701) TCGA-50-6593-01 9 71509280 71509280 T C PIP5K1B Missense_Mutation p.L166P 0.14 deleterious(0) probably_damaging(0.997) TCGA-50-6593-01 9 77436681 77436681 T G TRPM6 Missense_Mutation p.E305A 0.09 deleterious(0.01) possibly_damaging(0.721) TCGA-50-6593-01 9 79890421 79890421 G C VPS13A Missense_Mutation p.E840D 0.10 tolerated(0.14) benign(0.007) TCGA-50-6593-01 9 79890422 79890422 G T VPS13A Nonsense_Mutation p.E841* 0.10 TCGA-50-6593-01 9 79908412 79908412 A G VPS13A Silent p.L1165L 0.28 TCGA-50-6593-01 9 8449818 8449818 A T PTPRD Missense_Mutation p.S1299T 0.13 tolerated(0.25) benign(0.062) TCGA-50-6593-01 9 84606402 84606402 T C SPATA31D1 Silent p.S339S 0.15 TCGA-50-6593-01 9 97823056 97823056 C A C9orf3 Silent p.L732L 0.20 TCGA-50-6593-01 X 107858176 107858176 G T COL4A5 Nonsense_Mutation p.G811* 0.24 TCGA-50-6593-01 X 107858177 107858177 G T COL4A5 Missense_Mutation p.G811V 0.24 unknown(0) TCGA-50-6593-01 X 117758564 117758564 A G DOCK11 Missense_Mutation p.I1178M 0.30 tolerated(0.76) benign(0.051) TCGA-50-6593-01 X 128975781 128975781 C A ZDHHC9 Silent p.G47G 0.29 TCGA-50-6593-01 X 131206387 131206387 G T MST4 Missense_Mutation p.A342S 0.38 tolerated(0.22) benign(0.001) TCGA-50-6593-01 X 140995890 140995890 C A MAGEC1 Missense_Mutation p.S900R 0.34 deleterious(0.01) unknown(0) TCGA-50-6593-01 X 22010739 22010739 G T SMS Missense_Mutation p.A324S 0.12 tolerated(0.51) benign(0.122) TCGA-50-6593-01 X 2406876 2406876 C A ZBED1 Missense_Mutation p.V629F 0.27 deleterious(0.03) probably_damaging(0.945) TCGA-50-6593-01 X 2406877 2406877 C A ZBED1 Silent p.V628V 0.27 TCGA-50-6593-01 X 2407791 2407791 G A ZBED1 Nonsense_Mutation p.Q324* 0.35 TCGA-50-6593-01 X 34149722 34149722 G C FAM47A Missense_Mutation p.P225R 0.14 tolerated(0.2) probably_damaging(0.93) TCGA-50-6593-01 X 37028384 37028384 C T FAM47C Missense_Mutation p.P634L 0.09 deleterious(0.03) benign(0.036) TCGA-50-6593-01 X 37984682 37984682 T C SYTL5 Missense_Mutation p.L680P 0.10 deleterious(0) probably_damaging(0.998) TCGA-50-6593-01 X 38033568 38033568 C A SRPX Missense_Mutation p.G65V 0.19 deleterious(0) probably_damaging(1) TCGA-50-6593-01 X 51486791 51486791 G T GSPT2 Silent p.P23P 0.10 TCGA-50-6593-01 X 79286020 79286020 G T TBX22 Missense_Mutation p.V325L 0.18 tolerated(0.29) benign(0.098) TCGA-50-6594-01 10 101639582 101639582 C A DNMBP Missense_Mutation p.A1512S 0.30 tolerated(0.62) benign(0.01) TCGA-50-6594-01 10 112838132 112838132 G T ADRA2A Silent p.A126A 0.30 TCGA-50-6594-01 10 116070142 116070142 G T AFAP1L2 Missense_Mutation p.P285T 0.37 tolerated(0.07) benign(0.037) TCGA-50-6594-01 10 125426527 125426527 C G GPR26 Missense_Mutation p.H202D 0.38 deleterious(0) probably_damaging(0.996) TCGA-50-6594-01 10 134626371 134626371 G T TTC40 Missense_Mutation p.S2473R 0.29 tolerated(0.25) possibly_damaging(0.776) TCGA-50-6594-01 10 135012623 135012623 G A KNDC1 Missense_Mutation p.D871N 0.33 tolerated(0.07) possibly_damaging(0.905) TCGA-50-6594-01 10 15883599 15883599 C A FAM188A Splice_Site p.X79_splice 0.51 TCGA-50-6594-01 10 25886908 25886911 ACTG CCT GPR158 Frame_Shift_Del p.T785Pfs*23 0.33 TCGA-50-6594-01 10 48382057 48382057 C G RBP3 Missense_Mutation p.V1198L 0.25 tolerated(0.57) benign(0.299) TCGA-50-6594-01 10 48413982 48413982 C A GDF2 Missense_Mutation p.G296C 0.40 deleterious(0.03) benign(0.006) TCGA-50-6594-01 10 55626444 55626444 A T PCDH15 Silent p.T1225T 0.39 TCGA-50-6594-01 10 69881655 69881655 G C MYPN Missense_Mutation p.A154P 0.33 deleterious(0) probably_damaging(0.998) TCGA-50-6594-01 10 88683407 88683407 C T BMPR1A Silent p.S510S 0.38 TCGA-50-6594-01 10 91479222 91479222 G T KIF20B Missense_Mutation p.G494V 0.34 tolerated(0.15) probably_damaging(1) TCGA-50-6594-01 10 92677489 92677489 C G ANKRD1 Missense_Mutation p.M184I 0.35 deleterious(0.04) possibly_damaging(0.692) TCGA-50-6594-01 10 93853 93853 G T TUBB8 Missense_Mutation p.P160Q 0.34 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-50-6594-01 10 95557398 95557398 G A LGI1 Nonsense_Mutation p.W504* 0.32 TCGA-50-6594-01 10 98411062 98411062 C T PIK3AP1 Missense_Mutation p.A311T 0.30 deleterious(0.01) possibly_damaging(0.77) TCGA-50-6594-01 10 98743249 98743249 G A C10orf12 Missense_Mutation p.S701N 0.29 tolerated(0.19) benign(0.031) TCGA-50-6594-01 11 100141960 100141962 CAC TA CNTN5 Frame_Shift_Del p.T768Kfs*13 0.29 TCGA-50-6594-01 11 101777879 101777879 C G ANGPTL5 Missense_Mutation p.D66H 0.30 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-50-6594-01 11 103908338 103908338 C A DDI1 Missense_Mutation p.A263D 0.23 deleterious(0) probably_damaging(1) TCGA-50-6594-01 11 117089187 117089187 C A PCSK7 Missense_Mutation p.W510L 0.50 tolerated(0.44) benign(0.358) TCGA-50-6594-01 11 120983879 120983879 C A TECTA Silent p.G195G 0.31 TCGA-50-6594-01 11 120996407 120996407 C A TECTA Missense_Mutation p.L534M 0.22 deleterious(0.02) probably_damaging(0.961) TCGA-50-6594-01 11 123777147 123777147 A T OR8D4 Silent p.V3V 0.63 TCGA-50-6594-01 11 134104877 134104877 G T VPS26B Missense_Mutation p.A104S 0.60 tolerated(0.9) benign(0) TCGA-50-6594-01 11 14991586 14991586 G C CALCA Missense_Mutation p.T41R 0.60 deleterious(0.02) benign(0.132) TCGA-50-6594-01 11 21581860 21581860 G T NELL1 Missense_Mutation p.G638W 0.50 deleterious(0) probably_damaging(0.991) TCGA-50-6594-01 11 32657241 32657241 C A CCDC73 Splice_Site p.X395_splice 0.48 TCGA-50-6594-01 11 34664191 34664191 G C EHF Missense_Mutation p.G27A 0.62 tolerated_low_confidence(0.16) benign(0.215) TCGA-50-6594-01 11 44105108 44105108 G T ACCS Missense_Mutation p.Q463H 0.52 tolerated(0.05) benign(0.436) TCGA-50-6594-01 11 46894955 46894955 G T LRP4 Silent p.P1473P 0.62 TCGA-50-6594-01 11 5010946 5010946 G T MMP26 Missense_Mutation p.Q56H 0.50 deleterious(0.01) possibly_damaging(0.466) TCGA-50-6594-01 11 51412190 51412190 G C OR4A5 Missense_Mutation p.A69G 0.50 tolerated_low_confidence(0.08) benign(0.111) TCGA-50-6594-01 11 55033171 55033171 G C TRIM48 Missense_Mutation p.K185N 0.35 tolerated(0.25) benign(0.209) TCGA-50-6594-01 11 55111208 55111208 G T OR4A16 Missense_Mutation p.D178Y 0.45 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-50-6594-01 11 55340249 55340249 T A OR4C16 Missense_Mutation p.Y216N 0.53 deleterious(0) probably_damaging(0.984) TCGA-50-6594-01 11 55406611 55406611 G C OR4P4 Missense_Mutation p.V260L 0.37 tolerated(0.07) benign(0.003) TCGA-50-6594-01 11 56310300 56310300 G T OR5M11 Missense_Mutation p.T145K 0.44 deleterious(0.01) benign(0.371) TCGA-50-6594-01 11 57799282 57799282 G T OR6Q1 Silent p.T286T 0.44 TCGA-50-6594-01 11 59947340 59947340 C A MS4A6A Silent p.L110L 0.38 TCGA-50-6594-01 11 6007393 6007393 A G OR52L1 Silent p.F256F 0.49 TCGA-50-6594-01 11 60640699 60640699 C A ZP1 Missense_Mutation p.P393T 0.51 tolerated(0.07) benign(0.093) TCGA-50-6594-01 11 62010767 62010767 C A SCGB1D2 Missense_Mutation p.A21D 0.49 deleterious(0) probably_damaging(0.997) TCGA-50-6594-01 11 6655050 6655050 G T DCHS1 Missense_Mutation p.P730T 0.62 tolerated(0.19) benign(0.241) TCGA-50-6594-01 11 71146760 71146760 G A DHCR7 Silent p.R363R 0.38 TCGA-50-6594-01 11 71260011 71260011 A T KRTAP5-9 Missense_Mutation p.K103M 0.36 deleterious_low_confidence(0.02) unknown(0) TCGA-50-6594-01 11 74049567 74049567 C A PGM2L1 Missense_Mutation p.G571V 0.49 deleterious(0) probably_damaging(1) TCGA-50-6594-01 11 76372225 76372225 T A LRRC32 Missense_Mutation p.S138C 0.27 deleterious(0.01) probably_damaging(0.928) TCGA-50-6594-01 11 76867814 76867814 C T MYO7A Silent p.T193T 0.23 TCGA-50-6594-01 11 92088025 92088025 T C FAT3 Missense_Mutation p.L916P 0.41 possibly_damaging(0.511) TCGA-50-6594-01 11 92088206 92088206 C G FAT3 Silent p.V976V 0.31 TCGA-50-6594-01 12 10466042 10466042 A T KLRD1 Missense_Mutation p.I117F 0.59 deleterious(0) probably_damaging(0.991) TCGA-50-6594-01 12 106804616 106804616 A G POLR3B Missense_Mutation p.N327D 0.33 tolerated(0.75) benign(0.007) TCGA-50-6594-01 12 108008883 108008883 C G BTBD11 Missense_Mutation p.R649G 0.32 deleterious(0) probably_damaging(0.994) TCGA-50-6594-01 12 108147786 108147786 C T PRDM4 Missense_Mutation p.M82I 0.22 tolerated_low_confidence(0.1) benign(0.014) TCGA-50-6594-01 12 109639376 109639376 T C ACACB Missense_Mutation p.M928T 0.29 deleterious(0) probably_damaging(0.999) TCGA-50-6594-01 12 113534584 113534584 C A DTX1 Missense_Mutation p.T568N 0.37 deleterious(0) probably_damaging(0.997) TCGA-50-6594-01 12 113534585 113534585 C G DTX1 Silent p.T568T 0.36 TCGA-50-6594-01 12 119942925 119942925 C A CCDC60 Silent p.R234R 0.39 TCGA-50-6594-01 12 120599747 120599747 C A GCN1L1 Missense_Mutation p.R760L 0.33 benign(0.005) TCGA-50-6594-01 12 121132798 121132798 G T MLEC Missense_Mutation p.V196F 0.37 deleterious(0) possibly_damaging(0.889) TCGA-50-6594-01 12 121746298 121746298 C G ANAPC5 Missense_Mutation p.L751F 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.839) TCGA-50-6594-01 12 122724487 122724487 C T VPS33A Missense_Mutation p.E368K 0.22 tolerated(0.32) benign(0.045) TCGA-50-6594-01 12 129442128 129442128 C - GLT1D1 Frame_Shift_Del p.N196Mfs*5 0.18 TCGA-50-6594-01 12 129563213 129563213 C A TMEM132D Nonsense_Mutation p.E661* 0.41 TCGA-50-6594-01 12 130184388 130184388 G T TMEM132D Missense_Mutation p.S312Y 0.40 deleterious(0) possibly_damaging(0.785) TCGA-50-6594-01 12 1995390 1995390 G A CACNA2D4 Missense_Mutation p.A331V 0.58 deleterious(0.01) benign(0.244) TCGA-50-6594-01 12 31586069 31586069 C A DENND5B Intron 0.65 TCGA-50-6594-01 12 39156000 39156000 C A CPNE8 Missense_Mutation p.K198N 0.43 deleterious(0) possibly_damaging(0.486) TCGA-50-6594-01 12 41419119 41419119 G T CNTN1 Missense_Mutation p.E897D 0.39 tolerated(0.47) benign(0) TCGA-50-6594-01 12 43886354 43886354 C G ADAMTS20 Missense_Mutation p.D344H 0.19 deleterious(0) probably_damaging(0.97) TCGA-50-6594-01 12 48866732 48866732 A G ANP32D Silent p.L95L 0.36 TCGA-50-6594-01 12 56295911 56295911 C G WIBG Missense_Mutation p.E120D 0.32 tolerated(0.73) benign(0.003) TCGA-50-6594-01 12 6631034 6631034 C G NCAPD2 Silent p.V595V 0.28 TCGA-50-6594-01 12 68642443 68642443 C A IL22 3'UTR 0.39 TCGA-50-6594-01 12 70948943 70948943 C T PTPRB Missense_Mutation p.D1714N 0.15 tolerated(0.07) benign(0.076) TCGA-50-6594-01 12 72051003 72051003 T A ZFC3H1 Missense_Mutation p.E226V 0.31 deleterious(0) probably_damaging(0.991) TCGA-50-6594-01 12 72680536 72680536 G T TRHDE Missense_Mutation p.K285N 0.32 deleterious(0) probably_damaging(1) TCGA-50-6594-01 13 100637985 100637985 C - ZIC2 3'UTR 0.41 TCGA-50-6594-01 13 101833527 101833527 G - NALCN Intron 0.23 TCGA-50-6594-01 13 101833607 101833607 G T NALCN Intron 0.32 TCGA-50-6594-01 13 113803753 113803753 C A F10 Missense_Mutation p.D463E 0.30 tolerated(0.57) benign(0) TCGA-50-6594-01 13 25404638 25404638 G A RNF17 Silent p.Q754Q 0.29 TCGA-50-6594-01 13 26273380 26273380 G T ATP8A2 Missense_Mutation p.A761S 0.42 deleterious(0) probably_damaging(0.999) TCGA-50-6594-01 13 29008057 29008057 G T FLT1 Missense_Mutation p.R238S 0.37 tolerated(0.71) benign(0.003) TCGA-50-6594-01 13 45517710 45517711 - T NUFIP1 Frame_Shift_Ins p.R413Kfs*9 0.25 TCGA-50-6594-01 13 53217101 53217102 - A HNRNPA1L2 Frame_Shift_Ins p.V159Sfs*3 0.29 TCGA-50-6594-01 13 78492704 78492704 T A EDNRB Missense_Mutation p.Q92L 0.27 deleterious_low_confidence(0.04) benign(0.009) TCGA-50-6594-01 14 101488468 101488468 C G MIR379 RNA 0.42 TCGA-50-6594-01 14 103804756 103804757 - CAC EIF5 In_Frame_Ins p.P185dup 0.64 TCGA-50-6594-01 14 106586395 106586396 - A IGHV3-13 Frame_Shift_Ins p.L30Ffs*21 0.33 TCGA-50-6594-01 14 106877900 106877900 C A IGHV4-39 Nonsense_Mutation p.E32* 0.50 TCGA-50-6594-01 14 19377605 19377605 G T OR11H12 Missense_Mutation p.L4F 0.52 tolerated_low_confidence(0.05) benign(0.152) TCGA-50-6594-01 14 20871902 20871902 G A TEP1 Missense_Mutation p.R392C 0.45 tolerated(0.09) benign(0.059) TCGA-50-6594-01 14 22694669 22694669 C A TRAV36DV7 Missense_Mutation p.P5T 0.34 tolerated(0.63) benign(0.013) TCGA-50-6594-01 14 23866799 23866799 C A MYH6 Missense_Mutation p.G639C 0.25 deleterious(0) probably_damaging(0.978) TCGA-50-6594-01 14 23889145 23889145 C A MYH7 Missense_Mutation p.R1212L 0.20 deleterious(0.01) possibly_damaging(0.664) TCGA-50-6594-01 14 24884537 24884537 C A NYNRIN Silent p.L1194L 0.38 TCGA-50-6594-01 14 26918160 26918160 T A NOVA1 Missense_Mutation p.I177L 0.28 tolerated(1) unknown(0) TCGA-50-6594-01 14 30133012 30133012 T A PRKD1 Missense_Mutation p.S197C 0.31 deleterious(0) probably_damaging(0.987) TCGA-50-6594-01 14 36230167 36230167 G A RALGAPA1 Missense_Mutation p.L139F 0.19 deleterious(0) probably_damaging(0.999) TCGA-50-6594-01 14 45711277 45711277 C G MIS18BP1 Missense_Mutation p.R368T 0.15 tolerated(0.47) benign(0.001) TCGA-50-6594-01 14 47121002 47121002 C T RPL10L 5'UTR 0.32 TCGA-50-6594-01 14 47530668 47530668 C A MDGA2 Nonsense_Mutation p.E437* 0.24 TCGA-50-6594-01 14 47530771 47530771 T - MDGA2 Frame_Shift_Del p.G403Dfs*22 0.17 TCGA-50-6594-01 14 65544631 65544631 C T MAX Missense_Mutation p.V99I 0.59 tolerated(1) benign(0.002) TCGA-50-6594-01 14 73733266 73733266 C G PAPLN Silent p.G1080G 0.58 TCGA-50-6594-01 14 74196470 74196470 C A ELMSAN1 Silent p.P656P 0.69 TCGA-50-6594-01 14 77732669 77732669 G C NGB 3'UTR 0.72 TCGA-50-6594-01 14 99724153 99724153 C A BCL11B Missense_Mutation p.A28S 0.57 tolerated(0.17) benign(0.018) TCGA-50-6594-01 15 23060868 23060868 C A NIPA1 Silent p.T88T 0.68 TCGA-50-6594-01 15 24923236 24923236 C A NPAP1 Nonsense_Mutation p.S741* 0.74 TCGA-50-6594-01 15 40018855 40018855 C A FSIP1 Nonsense_Mutation p.E329* 0.71 TCGA-50-6594-01 15 41857260 41857260 A G TYRO3 Missense_Mutation p.K235R 0.83 tolerated(0.43) benign(0.008) TCGA-50-6594-01 15 42105978 42105978 A T MAPKBP1 Missense_Mutation p.S333C 0.68 deleterious(0) probably_damaging(0.94) TCGA-50-6594-01 15 43585737 43585737 C A TGM7 Missense_Mutation p.V35L 0.64 tolerated(0.26) benign(0.01) TCGA-50-6594-01 15 48513130 48513130 C G SLC12A1 Missense_Mutation p.L189V 0.63 deleterious(0.02) probably_damaging(0.998) TCGA-50-6594-01 15 51756966 51756966 A C DMXL2 Missense_Mutation p.Y2572D 0.69 deleterious(0.01) probably_damaging(0.999) TCGA-50-6594-01 15 74836611 74836611 G A ARID3B Missense_Mutation p.E112K 0.17 tolerated(0.25) benign(0.354) TCGA-50-6594-01 15 76866552 76866552 C - SCAPER Frame_Shift_Del p.V929Cfs*8 0.30 TCGA-50-6594-01 15 99672854 99672854 C G SYNM Missense_Mutation p.A1429G 0.69 tolerated(0.16) benign(0.009) TCGA-50-6594-01 16 11000948 11000948 C G CIITA Missense_Mutation p.F533L 0.24 tolerated(0.53) benign(0.042) TCGA-50-6594-01 16 1259320 1259320 G T CACNA1H Missense_Mutation p.D1218Y 0.32 deleterious(0) possibly_damaging(0.577) TCGA-50-6594-01 16 20497895 20497895 G T ACSM2A Splice_Site p.X544_splice 0.39 TCGA-50-6594-01 16 24231390 24231390 G T PRKCB 3'UTR 0.26 TCGA-50-6594-01 16 29810961 29810961 G T KIF22 Missense_Mutation p.G335C 0.42 deleterious(0) probably_damaging(1) TCGA-50-6594-01 16 30740811 30740811 G T SRCAP Missense_Mutation p.W2015C 0.30 probably_damaging(0.977) TCGA-50-6594-01 16 31391128 31391128 G T ITGAX Silent p.V973V 0.46 TCGA-50-6594-01 16 49557649 49557649 G T ZNF423 Silent p.V1237V 0.85 TCGA-50-6594-01 16 67913196 67913196 T C EDC4 Missense_Mutation p.F509L 0.66 deleterious(0.02) benign(0.256) TCGA-50-6594-01 16 71212908 71212908 G C HYDIN Missense_Mutation p.P102A 0.80 probably_damaging(0.981) TCGA-50-6594-01 16 72992181 72992181 G A ZFHX3 Missense_Mutation p.H622Y 0.69 probably_damaging(0.968) TCGA-50-6594-01 16 81167252 81167252 G T PKD1L2 RNA 0.59 TCGA-50-6594-01 16 848001 848001 G T CHTF18 3'UTR 0.38 TCGA-50-6594-01 16 88017823 88017823 G T BANP Missense_Mutation p.G99V 0.64 deleterious_low_confidence(0) probably_damaging(1) TCGA-50-6594-01 16 89351666 89351666 G A ANKRD11 Silent p.L428L 0.31 TCGA-50-6594-01 16 929718 929718 G A LMF1 Missense_Mutation p.P250L 0.44 deleterious(0) probably_damaging(1) TCGA-50-6594-01 17 10265460 10265460 G T MYH13 Missense_Mutation p.D160E 0.60 deleterious(0.01) probably_damaging(0.977) TCGA-50-6594-01 17 19318159 19318159 C T RNF112 Missense_Mutation p.P362L 0.48 tolerated(0.1) benign(0.046) TCGA-50-6594-01 17 32963144 32963144 G T TMEM132E Missense_Mutation p.R609L 0.31 deleterious(0.01) benign(0.121) TCGA-50-6594-01 17 36875767 36875767 A G MLLT6 Intron 0.19 TCGA-50-6594-01 17 39506922 39506922 C A KRT33A Missense_Mutation p.G33V 0.53 deleterious(0.02) benign(0.133) TCGA-50-6594-01 17 39506923 39506923 C A KRT33A Missense_Mutation p.G33W 0.54 deleterious(0.01) benign(0.055) TCGA-50-6594-01 17 39846406 39846406 G A EIF1 Missense_Mutation p.D88N 0.46 deleterious(0.01) benign(0.334) TCGA-50-6594-01 17 41597599 41597599 G T DHX8 Silent p.L967L 0.45 TCGA-50-6594-01 17 43227463 43227463 G A HEXIM1 Silent p.E302E 0.33 TCGA-50-6594-01 17 47299525 47299525 C T ABI3 Missense_Mutation p.P292L 0.46 tolerated(0.17) possibly_damaging(0.713) TCGA-50-6594-01 17 47583905 47583905 C T NGFR Silent p.D151D 0.20 TCGA-50-6594-01 17 49713294 49713294 C T CA10 Silent p.G237G 0.40 TCGA-50-6594-01 17 51901662 51901662 C A KIF2B Missense_Mutation p.S423Y 0.23 deleterious(0) probably_damaging(1) TCGA-50-6594-01 17 56247798 56247798 C A OR4D2 Missense_Mutation p.P261H 0.33 deleterious(0) probably_damaging(1) TCGA-50-6594-01 17 61833629 61833629 C A CCDC47 Nonsense_Mutation p.E307* 0.39 TCGA-50-6594-01 17 61959189 61959189 C A GH2 5'UTR 0.49 TCGA-50-6594-01 17 61988148 61988148 C T CSHL1 Silent p.L49L 0.30 TCGA-50-6594-01 17 61994662 61994662 C A GH1 3'UTR 0.42 TCGA-50-6594-01 17 6978642 6978642 C T CLEC10A Intron 0.58 TCGA-50-6594-01 17 72281270 72281270 A T DNAI2 Missense_Mutation p.Q92L 0.27 tolerated(0.09) benign(0.055) TCGA-50-6594-01 17 7577124 7577124 C T TP53 Missense_Mutation p.V272M 0.50 deleterious(0) probably_damaging(0.997) TCGA-50-6594-01 17 76539980 76539980 C A DNAH17 Missense_Mutation p.A831S 0.42 benign(0.005) TCGA-50-6594-01 17 8791869 8791869 C A PIK3R5 Missense_Mutation p.R412L 0.45 deleterious(0.02) benign(0.44) TCGA-50-6594-01 18 12724672 12724672 C A PSMG2 Intron 0.39 TCGA-50-6594-01 18 13825812 13825812 C A MC5R Silent p.A16A 0.40 TCGA-50-6594-01 18 13826320 13826320 G T MC5R Missense_Mutation p.V186F 0.36 deleterious(0.02) possibly_damaging(0.895) TCGA-50-6594-01 18 28719723 28719723 C A DSC1 Missense_Mutation p.A551S 0.59 deleterious(0.01) probably_damaging(0.999) TCGA-50-6594-01 18 28906836 28906836 G C DSG1 Splice_Site p.X29_splice 0.60 TCGA-50-6594-01 18 28913555 28913555 T C DSG1 Missense_Mutation p.Y230H 0.60 tolerated(0.9) benign(0.159) TCGA-50-6594-01 18 29038552 29038552 C A DSG3 Missense_Mutation p.P121T 0.62 deleterious(0) probably_damaging(0.957) TCGA-50-6594-01 18 29046559 29046559 C A DSG3 Missense_Mutation p.P493Q 0.58 deleterious(0) probably_damaging(1) TCGA-50-6594-01 18 29054364 29054364 T A DSG3 Silent p.S794S 0.61 TCGA-50-6594-01 18 44627236 44627236 G C KATNAL2 Splice_Site p.X421_splice 0.44 TCGA-50-6594-01 18 67531511 67531511 A T CD226 3'UTR 0.71 TCGA-50-6594-01 18 74627621 74627621 G A ZNF236 Missense_Mutation p.C1025Y 0.34 deleterious(0) probably_damaging(1) TCGA-50-6594-01 18 905426 905426 C A ADCYAP1 Silent p.V13V 0.43 TCGA-50-6594-01 19 12243489 12243490 TT - ZNF20 Frame_Shift_Del p.K504Tfs*21 0.42 TCGA-50-6594-01 19 17085965 17085965 C A CPAMD8 Missense_Mutation p.R718L 0.50 deleterious(0) probably_damaging(0.998) TCGA-50-6594-01 19 17865961 17865961 A G FCHO1 5'UTR 0.54 TCGA-50-6594-01 19 19449669 19449669 G C MAU2 Missense_Mutation p.E158Q 0.27 deleterious(0.04) possibly_damaging(0.796) TCGA-50-6594-01 19 1953943 1953943 G T CSNK1G2 Intron 0.59 TCGA-50-6594-01 19 30498541 30498541 G A URI1 Missense_Mutation p.D228N 0.07 tolerated(0.13) benign(0.014) TCGA-50-6594-01 19 33117667 33117667 C G ANKRD27 Missense_Mutation p.G496A 0.30 tolerated(0.13) probably_damaging(0.939) TCGA-50-6594-01 19 38976771 38976771 G C RYR1 Missense_Mutation p.A1826P 0.59 possibly_damaging(0.814) TCGA-50-6594-01 19 39086175 39086175 G A MAP4K1 Nonsense_Mutation p.Q764* 0.25 TCGA-50-6594-01 19 41518371 41518371 G T CYP2B6 Missense_Mutation p.R378L 0.33 deleterious(0) benign(0.275) TCGA-50-6594-01 19 46330801 46330801 G A SYMPK Silent p.V716V 0.22 TCGA-50-6594-01 19 48981804 48981804 C T CYTH2 Missense_Mutation p.S356L 0.41 tolerated(0.11) benign(0.14) TCGA-50-6594-01 19 50474602 50474602 C T SIGLEC16 RNA 0.27 TCGA-50-6594-01 19 50926091 50926091 G T SPIB Missense_Mutation p.D46Y 0.53 tolerated(0.2) benign(0.116) TCGA-50-6594-01 19 55085876 55085876 T A LILRA2 Missense_Mutation p.L60Q 0.64 deleterious(0) probably_damaging(1) TCGA-50-6594-01 19 56499322 56499322 C A NLRP8 3'UTR 0.55 TCGA-50-6594-01 19 57325336 57325336 C A PEG3 Nonsense_Mutation p.E1492* 0.64 TCGA-50-6594-01 19 57335710 57335710 C A PEG3 Missense_Mutation p.W105L 0.68 deleterious(0.01) possibly_damaging(0.551) TCGA-50-6594-01 19 58099970 58099970 G A ZIK1 Missense_Mutation p.E46K 0.33 deleterious(0.03) benign(0.003) TCGA-50-6594-01 19 58806844 58806844 G T ZNF8 Missense_Mutation p.G557V 0.61 deleterious(0.01) probably_damaging(0.999) TCGA-50-6594-01 19 7712288 7712288 G T STXBP2 Silent p.R529R 0.52 TCGA-50-6594-01 19 9049773 9049773 T G MUC16 Missense_Mutation p.S10620R 0.62 possibly_damaging(0.607) TCGA-50-6594-01 1 10041188 10041188 A G NMNAT1 Silent p.Q133Q 0.57 TCGA-50-6594-01 1 109191532 109191532 C A HENMT1 Nonsense_Mutation p.E280* 0.35 TCGA-50-6594-01 1 114640403 114640403 C - SYT6 Frame_Shift_Del p.K403Sfs*12 0.29 TCGA-50-6594-01 1 116941357 116941357 G C ATP1A1 Missense_Mutation p.D747H 0.49 deleterious(0.02) possibly_damaging(0.735) TCGA-50-6594-01 1 118484427 118484427 A G WDR3 Missense_Mutation p.K316E 0.45 tolerated(0.28) benign(0.293) TCGA-50-6594-01 1 120056732 120056732 C A HSD3B1 Silent p.R196R 0.23 TCGA-50-6594-01 1 12786060 12786060 G T AADACL3 3'Flank 0.42 TCGA-50-6594-01 1 12854358 12854358 T A PRAMEF1 Nonsense_Mutation p.Y194* 0.18 TCGA-50-6594-01 1 150463952 150463952 G A TARS2 Missense_Mutation p.E199K 0.30 deleterious(0.04) benign(0.014) TCGA-50-6594-01 1 151109355 151109355 C A SEMA6C Missense_Mutation p.V318F 0.22 deleterious(0) possibly_damaging(0.607) TCGA-50-6594-01 1 155167905 155167905 C A THBS3 Silent p.R727R 0.38 TCGA-50-6594-01 1 155449759 155449759 T A ASH1L Nonsense_Mutation p.K968* 0.31 TCGA-50-6594-01 1 156622711 156622711 C A BCAN Intron 0.28 TCGA-50-6594-01 1 156770211 156770211 A T PRCC Nonsense_Mutation p.K479* 0.38 TCGA-50-6594-01 1 158435355 158435355 G T OR10K1 Nonsense_Mutation p.E2* 0.29 TCGA-50-6594-01 1 158450300 158450300 C A OR10R2 Missense_Mutation p.N211K 0.24 deleterious(0.03) benign(0.008) TCGA-50-6594-01 1 158747401 158747401 G T OR6N2 Missense_Mutation p.L9M 0.43 deleterious(0.02) possibly_damaging(0.541) TCGA-50-6594-01 1 160275343 160275343 C A COPA Missense_Mutation p.R525L 0.43 deleterious(0) benign(0.108) TCGA-50-6594-01 1 160765944 160765944 C A LY9 5'Flank 0.27 TCGA-50-6594-01 1 161188514 161188514 G A FCER1G Splice_Site p.X66_splice 0.32 TCGA-50-6594-01 1 161479723 161479723 G A FCGR2A Missense_Mutation p.G160R 0.42 tolerated(0.05) probably_damaging(1) TCGA-50-6594-01 1 161682007 161682007 G T FCRLA Missense_Mutation p.Q284H 0.39 tolerated(0.12) benign(0.008) TCGA-50-6594-01 1 166039616 166039616 C A FAM78B Missense_Mutation p.Q216H 0.39 tolerated(0.23) benign(0.003) TCGA-50-6594-01 1 168066241 168066241 G A GPR161 Silent p.L222L 0.23 TCGA-50-6594-01 1 169525912 169525912 T C F5 Missense_Mutation p.I308M 0.39 deleterious(0) probably_damaging(0.922) TCGA-50-6594-01 1 171504659 171504659 C T PRRC2C Nonsense_Mutation p.Q654* 0.35 TCGA-50-6594-01 1 172571257 172571257 G T SUCO Missense_Mutation p.L1024F 0.30 deleterious(0) probably_damaging(0.999) TCGA-50-6594-01 1 175049402 175049402 C A TNN Nonsense_Mutation p.Y296* 0.27 TCGA-50-6594-01 1 175067610 175067610 G T TNN Silent p.V666V 0.26 TCGA-50-6594-01 1 175067611 175067611 G T TNN Missense_Mutation p.G667W 0.26 deleterious(0.02) probably_damaging(0.989) TCGA-50-6594-01 1 176934374 176934374 C A ASTN1 Splice_Site p.X508_splice 0.51 TCGA-50-6594-01 1 198703333 198703333 A T PTPRC Missense_Mutation p.K717N 0.41 deleterious(0.03) probably_damaging(0.951) TCGA-50-6594-01 1 201196209 201196209 C G IGFN1 Missense_Mutation p.S3662R 0.19 probably_damaging(0.988) TCGA-50-6594-01 1 202287530 202287530 C G LGR6 Missense_Mutation p.A700G 0.26 tolerated(0.12) possibly_damaging(0.601) TCGA-50-6594-01 1 202736142 202736142 T A KDM5B Missense_Mutation p.Y208F 0.31 deleterious(0.03) possibly_damaging(0.622) TCGA-50-6594-01 1 20810198 20810198 C T CAMK2N1 Missense_Mutation p.D61N 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.908) TCGA-50-6594-01 1 214170994 214170994 G T PROX1 Silent p.S372S 0.39 TCGA-50-6594-01 1 215847564 215847564 G C USH2A Missense_Mutation p.I4563M 0.35 possibly_damaging(0.653) TCGA-50-6594-01 1 216262461 216262461 A G USH2A Silent p.T1593T 0.39 TCGA-50-6594-01 1 217955618 217955618 G C SPATA17 Missense_Mutation p.E276Q 0.40 tolerated(0.08) benign(0.033) TCGA-50-6594-01 1 223178057 223178057 C T DISP1 Silent p.T1106T 0.33 TCGA-50-6594-01 1 232568021 232568021 C A SIPA1L2 Nonsense_Mutation p.E1410* 0.39 TCGA-50-6594-01 1 237580393 237580393 C T RYR2 Missense_Mutation p.S273F 0.16 probably_damaging(0.999) TCGA-50-6594-01 1 237732578 237732578 C A RYR2 Nonsense_Mutation p.S1186* 0.25 TCGA-50-6594-01 1 238048734 238048734 T G ZP4 Missense_Mutation p.T373P 0.34 tolerated(0.46) benign(0.02) TCGA-50-6594-01 1 240990412 240990412 G T RGS7 Missense_Mutation p.H224N 0.28 tolerated(0.58) benign(0.196) TCGA-50-6594-01 1 24383961 24383961 C A MYOM3 Missense_Mutation p.G1403C 0.23 deleterious(0) probably_damaging(1) TCGA-50-6594-01 1 248262995 248262995 G T OR2L13 Missense_Mutation p.M106I 0.34 deleterious(0.04) benign(0.005) TCGA-50-6594-01 1 248308657 248308657 G C OR2M5 Missense_Mutation p.D70H 0.37 deleterious(0.01) benign(0.228) TCGA-50-6594-01 1 248436889 248436889 C G OR2T33 Silent p.V76V 0.19 TCGA-50-6594-01 1 248525735 248525735 G C OR2T4 Missense_Mutation p.G285R 0.30 deleterious(0) probably_damaging(1) TCGA-50-6594-01 1 248684970 248684970 C A OR2G6 Missense_Mutation p.S8Y 0.32 tolerated(0.24) benign(0.036) TCGA-50-6594-01 1 248737546 248737546 G T OR2T34 Missense_Mutation p.F171L 0.63 tolerated(0.15) benign(0.027) TCGA-50-6594-01 1 26356998 26356998 C A EXTL1 Missense_Mutation p.A338E 0.22 tolerated(1) benign(0.357) TCGA-50-6594-01 1 28208975 28208975 C - THEMIS2 Frame_Shift_Del p.Q381Rfs*18 0.30 TCGA-50-6594-01 1 31769581 31769581 C A SNRNP40 Missense_Mutation p.K6N 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-50-6594-01 1 32193111 32193111 G T BAI2 Silent p.P1556P 0.33 TCGA-50-6594-01 1 40717240 40717240 A G TMCO2 Missense_Mutation p.T175A 0.34 tolerated_low_confidence(0.05) possibly_damaging(0.801) TCGA-50-6594-01 1 43772926 43772926 G A TIE1 Missense_Mutation p.G252S 0.48 deleterious(0) probably_damaging(1) TCGA-50-6594-01 1 45227636 45227636 A T KIF2C Missense_Mutation p.T578S 0.43 deleterious(0.01) probably_damaging(0.996) TCGA-50-6594-01 1 52499255 52499255 C A KTI12 Missense_Mutation p.G60V 0.48 deleterious(0) possibly_damaging(0.85) TCGA-50-6594-01 1 55158164 55158164 G T MROH7 Nonsense_Mutation p.E927* 0.36 TCGA-50-6594-01 1 68895518 68895518 G T RPE65 Silent p.R515R 0.51 TCGA-50-6594-01 1 68904918 68904918 C A RPE65 Nonsense_Mutation p.G272* 0.51 TCGA-50-6594-01 1 74507409 74507409 C A LRRIQ3 Silent p.R402R 0.49 TCGA-50-6594-01 1 74671565 74671565 G T FPGT 3'UTR 0.36 TCGA-50-6594-01 1 79403823 79403823 T C ELTD1 Missense_Mutation p.I180V 0.15 tolerated(0.61) benign(0.001) TCGA-50-6594-01 1 85115658 85115658 C A SSX2IP Intron 0.48 TCGA-50-6594-01 1 86488261 86488261 G C COL24A1 Missense_Mutation p.T721R 0.33 tolerated(0.08) benign(0.109) TCGA-50-6594-01 1 87031533 87031533 C A CLCA4 Missense_Mutation p.L262I 0.30 deleterious(0.04) benign(0.16) TCGA-50-6594-01 1 87045876 87045876 G T CLCA4 Missense_Mutation p.A870S 0.40 tolerated(0.36) benign(0.388) TCGA-50-6594-01 1 89732129 89732129 T C GBP5 Silent p.L256L 0.25 TCGA-50-6594-01 20 23472318 23472318 G A CST8 Missense_Mutation p.R5Q 0.33 tolerated(0.34) benign(0.022) TCGA-50-6594-01 20 25003719 25003719 T A ACSS1 Nonsense_Mutation p.K273* 0.47 TCGA-50-6594-01 20 30785030 30785030 T C PLAGL2 Missense_Mutation p.K239R 0.63 tolerated(0.17) probably_damaging(0.982) TCGA-50-6594-01 20 31967468 31967468 C G CDK5RAP1 Missense_Mutation p.Q302H 0.09 deleterious(0) probably_damaging(1) TCGA-50-6594-01 20 34205716 34205716 C A SPAG4 Silent p.I164I 0.34 TCGA-50-6594-01 20 34278354 34278354 C A NFS1 Missense_Mutation p.S181I 0.39 deleterious(0) benign(0.361) TCGA-50-6594-01 20 35467806 35467806 C A SOGA1 Missense_Mutation p.M242I 0.24 deleterious(0) probably_damaging(0.995) TCGA-50-6594-01 20 35467808 35467808 T A SOGA1 Missense_Mutation p.M242L 0.25 deleterious(0) probably_damaging(0.988) TCGA-50-6594-01 20 3677378 3677378 G T SIGLEC1 Silent p.S846S 0.62 TCGA-50-6594-01 20 37536806 37536806 G T PPP1R16B Missense_Mutation p.E388D 0.16 tolerated(0.6) benign(0.063) TCGA-50-6594-01 20 43042431 43042431 G C HNF4A Silent p.L161L 0.29 TCGA-50-6594-01 20 43355732 43355732 C A WISP2 Silent p.P179P 0.21 TCGA-50-6594-01 20 43851752 43851752 T C SEMG2 Silent p.S493S 0.28 TCGA-50-6594-01 20 44540080 44540080 G A PLTP Silent p.F4F 0.27 TCGA-50-6594-01 20 45362393 45362393 A G SLC2A10 Splice_Site p.X516_splice 0.19 TCGA-50-6594-01 20 46307517 46307517 C A SULF2 Missense_Mutation p.A366S 0.37 deleterious(0) probably_damaging(0.991) TCGA-50-6594-01 20 46313277 46313277 C A SULF2 Missense_Mutation p.M262I 0.36 tolerated(0.19) possibly_damaging(0.507) TCGA-50-6594-01 20 55027266 55027266 C A CASS4 Missense_Mutation p.T345N 0.33 deleterious(0.01) possibly_damaging(0.852) TCGA-50-6594-01 20 60791902 60791902 C A HRH3 Silent p.L166L 0.41 TCGA-50-6594-01 20 61981097 61981097 G T CHRNA4 Missense_Mutation p.P556T 0.38 tolerated(0.5) benign(0.113) TCGA-50-6594-01 21 15755506 15755506 G T HSPA13 5'UTR 0.29 TCGA-50-6594-01 21 31964888 31964888 T A KRTAP6-3 Missense_Mutation p.C35S 0.29 unknown(0) TCGA-50-6594-01 21 31971153 31971153 C A KRTAP6-2 Missense_Mutation p.G14V 0.27 unknown(0) TCGA-50-6594-01 21 43857596 43857596 A T UBASH3A Splice_Site p.X465_splice 0.40 TCGA-50-6594-01 21 44483093 44483093 G A CBS Silent p.Y308Y 0.46 TCGA-50-6594-01 21 45819245 45819245 A T TRPM2 Missense_Mutation p.E710V 0.34 deleterious(0.03) possibly_damaging(0.824) TCGA-50-6594-01 21 45941973 45941973 A C TSPEAR Missense_Mutation p.S453R 0.29 deleterious(0) probably_damaging(1) TCGA-50-6594-01 21 47704209 47704209 C T MCM3AP Missense_Mutation p.R331Q 0.15 tolerated(0.06) probably_damaging(0.995) TCGA-50-6594-01 22 20052235 20052235 G T TANGO2 3'UTR 0.61 TCGA-50-6594-01 22 26400716 26400716 A T MYO18B Missense_Mutation p.E2122V 0.77 deleterious(0.02) benign(0.026) TCGA-50-6594-01 22 28194003 28194003 G T MN1 Missense_Mutation p.N843K 0.53 probably_damaging(0.937) TCGA-50-6594-01 22 40043907 40043907 C A CACNA1I Missense_Mutation p.P515T 0.17 tolerated(0.08) benign(0) TCGA-50-6594-01 22 42095530 42095530 G A MEI1 5'UTR 0.25 TCGA-50-6594-01 22 50705474 50705474 G T MAPK11 Missense_Mutation p.L167M 0.31 deleterious(0) probably_damaging(0.975) TCGA-50-6594-01 2 107423189 107423189 G T ST6GAL2 Missense_Mutation p.P512H 0.32 probably_damaging(1) TCGA-50-6594-01 2 108487461 108487461 G C RGPD4 Missense_Mutation p.E1001Q 0.13 tolerated(0.21) benign(0.325) TCGA-50-6594-01 2 108496518 108496518 T A RGPD4 Silent p.L1673L 0.32 TCGA-50-6594-01 2 113742503 113742503 C A IL36G Silent p.T129T 0.46 TCGA-50-6594-01 2 116510839 116510839 C T DPP10 Missense_Mutation p.T351I 0.39 deleterious(0) probably_damaging(0.964) TCGA-50-6594-01 2 11728879 11728879 G T GREB1 Silent p.G389G 0.42 TCGA-50-6594-01 2 119731997 119731997 G T MARCO Missense_Mutation p.M183I 0.22 tolerated(0.29) benign(0.001) TCGA-50-6594-01 2 125405480 125405480 C A CNTNAP5 Missense_Mutation p.H673Q 0.29 tolerated(0.16) benign(0.025) TCGA-50-6594-01 2 136566900 136566900 C T LCT Missense_Mutation p.G1006D 0.30 deleterious(0.02) probably_damaging(0.939) TCGA-50-6594-01 2 143685270 143685270 A G KYNU Silent p.T111T 0.34 TCGA-50-6594-01 2 143712385 143712385 A G KYNU Missense_Mutation p.N127S 0.29 tolerated(0.39) benign(0) TCGA-50-6594-01 2 144714907 144714907 C A GTDC1 Splice_Site p.X329_splice 0.36 TCGA-50-6594-01 2 157183331 157183331 C A NR4A2 Missense_Mutation p.W420C 0.39 deleterious(0) probably_damaging(1) TCGA-50-6594-01 2 158114923 158114923 G A GALNT5 Missense_Mutation p.R110K 0.29 tolerated(0.59) benign(0.001) TCGA-50-6594-01 2 163374550 163374550 T C KCNH7 Silent p.S194S 0.34 TCGA-50-6594-01 2 164467657 164467657 G A FIGN Missense_Mutation p.P229S 0.31 tolerated(0.69) possibly_damaging(0.857) TCGA-50-6594-01 2 168115203 168115203 C T XIRP2 3'UTR 0.19 TCGA-50-6594-01 2 168726546 168726546 A T B3GALT1 3'UTR 0.28 TCGA-50-6594-01 2 169745772 169745772 C G SPC25 Missense_Mutation p.E55Q 0.33 deleterious(0.02) possibly_damaging(0.503) TCGA-50-6594-01 2 169780177 169780177 T - ABCB11 Frame_Shift_Del p.G1308Efs*6 0.23 TCGA-50-6594-01 2 172337513 172337513 A G DCAF17 Silent p.R484R 0.40 TCGA-50-6594-01 2 172821868 172821868 G T HAT1 Missense_Mutation p.V107F 0.28 deleterious(0) possibly_damaging(0.809) TCGA-50-6594-01 2 172942609 172942609 A C METAP1D Missense_Mutation p.E263D 0.21 tolerated(0.44) benign(0.256) TCGA-50-6594-01 2 17697542 17697542 G A RAD51AP2 Missense_Mutation p.P714L 0.38 tolerated(0.16) benign(0.15) TCGA-50-6594-01 2 179401683 179401683 T - TTN Frame_Shift_Del p.I33385Sfs*58 0.24 TCGA-50-6594-01 2 179433110 179433110 A G TTN Missense_Mutation p.Y25917H 0.39 TCGA-50-6594-01 2 179583250 179583250 T A TTN Missense_Mutation p.T8195S 0.41 TCGA-50-6594-01 2 17998189 17998189 T G MSGN1 Missense_Mutation p.L135R 0.35 deleterious(0) possibly_damaging(0.682) TCGA-50-6594-01 2 180041248 180041248 C A SESTD1 Missense_Mutation p.R61I 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-50-6594-01 2 185803037 185803037 C A ZNF804A Missense_Mutation p.H972N 0.33 deleterious(0) probably_damaging(0.932) TCGA-50-6594-01 2 189925510 189925510 C A COL5A2 Splice_Site p.X678_splice 0.24 TCGA-50-6594-01 2 200188633 200188633 C A SATB2 Missense_Mutation p.A479S 0.34 tolerated(1) benign(0.007) TCGA-50-6594-01 2 201800586 201800586 C A ORC2 Nonsense_Mutation p.E182* 0.28 TCGA-50-6594-01 2 202483860 202483860 A G ALS2CR11 5'UTR 0.44 TCGA-50-6594-01 2 20483206 20483206 C T PUM2 Missense_Mutation p.G445S 0.28 deleterious(0) probably_damaging(1) TCGA-50-6594-01 2 21251398 21251398 G T APOB Missense_Mutation p.L544I 0.42 probably_damaging(0.998) TCGA-50-6594-01 2 218675013 218675013 C A TNS1 Missense_Mutation p.G1584C 0.53 deleterious(0.03) probably_damaging(0.96) TCGA-50-6594-01 2 231149104 231149104 G C SP140 Missense_Mutation p.R514S 0.54 tolerated(0.36) benign(0.045) TCGA-50-6594-01 2 236706531 236706531 G T AGAP1 Splice_Site p.X267_splice 0.59 TCGA-50-6594-01 2 27247075 27247075 C G MAPRE3 Missense_Mutation p.L127V 0.23 tolerated(1) benign(0.001) TCGA-50-6594-01 2 31483646 31483646 G T EHD3 Missense_Mutation p.W258L 0.39 deleterious(0) probably_damaging(0.992) TCGA-50-6594-01 2 31625983 31625983 C A XDH Missense_Mutation p.C43F 0.25 deleterious(0) probably_damaging(0.976) TCGA-50-6594-01 2 3691504 3691504 C T COLEC11 Silent p.G218G 0.18 TCGA-50-6594-01 2 38294239 38294239 T G RMDN2 3'UTR 0.32 TCGA-50-6594-01 2 40657385 40657385 G T SLC8A1 Silent p.T12T 0.35 TCGA-50-6594-01 2 44064972 44064972 C A ABCG5 Splice_Site p.X89_splice 0.36 TCGA-50-6594-01 2 61431428 61431428 T C USP34 Missense_Mutation p.N3116S 0.32 deleterious(0.03) possibly_damaging(0.53) TCGA-50-6594-01 2 75061718 75061718 C T HK2 Missense_Mutation p.S4L 0.16 tolerated_low_confidence(0.38) benign(0.023) TCGA-50-6594-01 2 75276688 75276688 G A TACR1 Silent p.H365H 0.36 TCGA-50-6594-01 2 89339910 89339910 C T IGKV1-12 Nonsense_Mutation p.W54* 0.22 TCGA-50-6594-01 2 90060948 90060948 G T IGKV6D-21 Missense_Mutation p.A99S 0.30 tolerated(0.13) benign(0.096) TCGA-50-6594-01 2 9463317 9463317 G T ASAP2 Nonsense_Mutation p.G180* 0.34 TCGA-50-6594-01 2 9547108 9547108 C A ITGB1BP1 Intron 0.38 TCGA-50-6594-01 2 99170827 99170827 G T INPP4A Missense_Mutation p.A486S 0.27 tolerated(0.34) benign(0.073) TCGA-50-6594-01 3 100356236 100356236 G T GPR128 Missense_Mutation p.A230S 0.57 tolerated(0.82) benign(0.003) TCGA-50-6594-01 3 108833273 108833273 C A MORC1 Missense_Mutation p.S26I 0.31 deleterious(0.01) probably_damaging(0.966) TCGA-50-6594-01 3 11078613 11078613 C A SLC6A1 Silent p.P587P 0.61 TCGA-50-6594-01 3 118645047 118645047 C T IGSF11 Missense_Mutation p.V161I 0.43 tolerated(0.34) benign(0.173) TCGA-50-6594-01 3 124732515 124732515 G A HEG1 Silent p.Y636Y 0.37 TCGA-50-6594-01 3 129275994 129275994 T A PLXND1 Nonsense_Mutation p.K1840* 0.42 TCGA-50-6594-01 3 130095473 130095473 C A COL6A5 Nonsense_Mutation p.S154* 0.37 TCGA-50-6594-01 3 131283074 131283074 G T CPNE4 Nonsense_Mutation p.C349* 0.32 TCGA-50-6594-01 3 133371470 133371470 C G TOPBP1 Missense_Mutation p.R309P 0.20 tolerated(0.46) benign(0.004) TCGA-50-6594-01 3 138665316 138665316 G A FOXL2 Silent p.Y83Y 0.39 TCGA-50-6594-01 3 151166649 151166649 C A IGSF10 Missense_Mutation p.V374L 0.41 tolerated(0.96) benign(0.026) TCGA-50-6594-01 3 151166651 151166651 G T IGSF10 Missense_Mutation p.P373Q 0.44 tolerated(0.84) benign(0.05) TCGA-50-6594-01 3 158409161 158409161 C T GFM1 Nonsense_Mutation p.Q721* 0.20 TCGA-50-6594-01 3 164735641 164735641 G T SI Missense_Mutation p.P1181T 0.37 deleterious(0) possibly_damaging(0.862) TCGA-50-6594-01 3 164776800 164776800 T A SI Missense_Mutation p.Q450L 0.30 tolerated(0.23) benign(0.004) TCGA-50-6594-01 3 180381658 180381658 T A CCDC39 Silent p.T69T 0.24 TCGA-50-6594-01 3 183824008 183824008 C G HTR3E Missense_Mutation p.P366A 0.32 tolerated(0.27) possibly_damaging(0.507) TCGA-50-6594-01 3 183967125 183967125 C T ALG3 5'Flank 0.36 TCGA-50-6594-01 3 186915369 186915369 C A RTP1 Missense_Mutation p.F22L 0.36 tolerated_low_confidence(0.88) benign(0) TCGA-50-6594-01 3 186953834 186953834 C A MASP1 Missense_Mutation p.G609C 0.40 tolerated(0.07) possibly_damaging(0.879) TCGA-50-6594-01 3 188590546 188590546 T A LPP Missense_Mutation p.C569S 0.25 deleterious(0) probably_damaging(0.999) TCGA-50-6594-01 3 194373629 194373629 C A LSG1 Missense_Mutation p.Q334H 0.47 tolerated(0.12) benign(0.015) TCGA-50-6594-01 3 43743798 43743798 G A ABHD5 Silent p.K75K 0.55 TCGA-50-6594-01 3 49213241 49213241 G T KLHDC8B 3'UTR 0.73 TCGA-50-6594-01 3 52183986 52183986 A C POC1A Missense_Mutation p.S41A 0.61 tolerated(0.1) benign(0.084) TCGA-50-6594-01 3 52328239 52328239 C T GLYCTK 3'Flank 0.56 TCGA-50-6594-01 3 97868309 97868309 T A OR5H14 Missense_Mutation p.L27Q 0.60 deleterious(0) possibly_damaging(0.895) TCGA-50-6594-01 4 100130052 100130052 G T ADH6 Missense_Mutation p.L201M 0.45 deleterious(0.01) probably_damaging(1) TCGA-50-6594-01 4 100197673 100197673 G T ADH1A 3'UTR 0.65 TCGA-50-6594-01 4 124011851 124011851 G T SPATA5 Missense_Mutation p.R777S 0.54 deleterious(0.02) possibly_damaging(0.593) TCGA-50-6594-01 4 128812264 128812264 A T PLK4 Silent p.S616S 0.49 TCGA-50-6594-01 4 130030700 130030700 A T C4orf33 Missense_Mutation p.S123C 0.59 tolerated(0.1) benign(0.022) TCGA-50-6594-01 4 155219046 155219046 G T DCHS2 Missense_Mutation p.S1685R 0.29 deleterious(0) possibly_damaging(0.839) TCGA-50-6594-01 4 164394464 164394465 - T TKTL2 Frame_Shift_Ins p.Y142Vfs*3 0.28 TCGA-50-6594-01 4 164450168 164450168 A T MARCH1 Missense_Mutation p.L201Q 0.54 deleterious(0) probably_damaging(0.999) TCGA-50-6594-01 4 166307395 166307395 G T CPE Intron 0.46 TCGA-50-6594-01 4 177063217 177063217 A G WDR17 Missense_Mutation p.N533S 0.36 deleterious(0.02) possibly_damaging(0.721) TCGA-50-6594-01 4 190878635 190878635 C A FRG1 Missense_Mutation p.A172E 0.06 deleterious(0) probably_damaging(0.994) TCGA-50-6594-01 4 20255565 20255565 G C SLIT2 Missense_Mutation p.G43R 0.29 tolerated(0.11) probably_damaging(0.953) TCGA-50-6594-01 4 20619132 20619132 G T SLIT2 Missense_Mutation p.G1403C 0.39 deleterious(0) probably_damaging(1) TCGA-50-6594-01 4 41984938 41984938 G T DCAF4L1 Nonsense_Mutation p.G377* 0.45 TCGA-50-6594-01 4 44176822 44176822 C A KCTD8 Missense_Mutation p.Q469H 0.38 deleterious(0.03) possibly_damaging(0.459) TCGA-50-6594-01 4 46060349 46060349 G A GABRG1 Silent p.S267S 0.27 TCGA-50-6594-01 4 47571099 47571099 G C ATP10D Silent p.P1033P 0.33 TCGA-50-6594-01 4 48572899 48572899 C A FRYL Missense_Mutation p.V981L 0.28 tolerated(1) benign(0.025) TCGA-50-6594-01 4 55963855 55963855 C A KDR Missense_Mutation p.R863M 0.24 deleterious(0.03) possibly_damaging(0.586) TCGA-50-6594-01 4 55971027 55971027 A T KDR Silent p.P590P 0.49 TCGA-50-6594-01 4 6083359 6083359 G T JAKMIP1 Missense_Mutation p.L360I 0.24 tolerated(0.11) possibly_damaging(0.885) TCGA-50-6594-01 4 68795710 68795710 G T TMPRSS11A Missense_Mutation p.F126L 0.44 deleterious(0.04) possibly_damaging(0.628) TCGA-50-6594-01 4 69416547 69416547 A G UGT2B17 Silent p.H387H 0.27 TCGA-50-6594-01 4 69811094 69811094 G T UGT2A3 Missense_Mutation p.P265H 0.40 deleterious(0) probably_damaging(0.996) TCGA-50-6594-01 4 71275675 71275675 C A PROL1 Missense_Mutation p.N210K 0.48 deleterious_low_confidence(0.05) unknown(0) TCGA-50-6594-01 4 71275676 71275676 C A PROL1 Missense_Mutation p.R211S 0.47 tolerated_low_confidence(0.37) unknown(0) TCGA-50-6594-01 4 74852991 74852991 A T PPBP Nonstop_Mutation p.*129Kext*15 0.32 TCGA-50-6594-01 4 76882214 76882214 T C SDAD1 Silent p.T441T 0.30 TCGA-50-6594-01 4 82125934 82125934 C A PRKG2 Nonsense_Mutation p.G90* 0.20 TCGA-50-6594-01 4 84383867 84383867 G T FAM175A Missense_Mutation p.H329N 0.50 tolerated(0.31) benign(0.001) TCGA-50-6594-01 4 8589099 8589099 C A GPR78 3'UTR 0.46 TCGA-50-6594-01 4 87019676 87019676 C T MAPK10 Splice_Site p.X268_splice 0.15 TCGA-50-6594-01 4 871403 871403 C G GAK Missense_Mutation p.R619P 0.38 deleterious(0) probably_damaging(0.948) TCGA-50-6594-01 4 88584032 88584032 C A DMP1 Missense_Mutation p.P368T 0.49 deleterious(0) probably_damaging(0.999) TCGA-50-6594-01 4 88766962 88766962 A T MEPE Silent p.G314G 0.40 TCGA-50-6594-01 4 89415467 89415467 G C HERC5 Missense_Mutation p.S810T 0.60 deleterious(0.03) probably_damaging(0.998) TCGA-50-6594-01 4 90168977 90168977 C A GPRIN3 Missense_Mutation p.R762L 0.23 deleterious(0) probably_damaging(0.997) TCGA-50-6594-01 4 96137361 96137361 T A UNC5C Silent p.G549G 0.14 TCGA-50-6594-01 5 11199707 11199707 G C CTNND2 Missense_Mutation p.R610G 0.69 deleterious(0) probably_damaging(0.994) TCGA-50-6594-01 5 115338980 115338980 G T AQPEP Missense_Mutation p.W647L 0.75 deleterious(0) probably_damaging(1) TCGA-50-6594-01 5 115814324 115814324 G A SEMA6A Silent p.I447I 0.68 TCGA-50-6594-01 5 115831129 115831129 G A SEMA6A Missense_Mutation p.P142S 0.75 deleterious(0) probably_damaging(1) TCGA-50-6594-01 5 118866961 118866961 G T HSD17B4 Missense_Mutation p.G644C 0.67 deleterious(0.01) possibly_damaging(0.882) TCGA-50-6594-01 5 121311046 121311046 G T SRFBP1 Silent p.R54R 0.75 TCGA-50-6594-01 5 121759192 121759192 C A SNCAIP Missense_Mutation p.Q254K 0.76 tolerated(0.17) benign(0.066) TCGA-50-6594-01 5 137802793 137802793 G A EGR1 Missense_Mutation p.E219K 0.75 deleterious(0.01) possibly_damaging(0.621) TCGA-50-6594-01 5 138210660 138210660 C G LRRTM2 5'UTR 0.63 TCGA-50-6594-01 5 139864795 139864795 C T ANKHD1 Missense_Mutation p.L654F 0.23 unknown(0) TCGA-50-6594-01 5 140182888 140182888 C T PCDHA3 Silent p.V702V 0.70 TCGA-50-6594-01 5 140222831 140222831 C G PCDHA8 Missense_Mutation p.S642C 0.17 deleterious_low_confidence(0) benign(0.154) TCGA-50-6594-01 5 140262933 140262933 A T PCDHA13 Missense_Mutation p.R360S 0.76 tolerated_low_confidence(0.2) benign(0.068) TCGA-50-6594-01 5 140563269 140563269 G T PCDHB16 Missense_Mutation p.G379W 0.69 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-50-6594-01 5 140574557 140574557 G T PCDHB10 3'UTR 0.47 TCGA-50-6594-01 5 140595649 140595649 C T PCDHB13 Missense_Mutation p.R652C 0.67 deleterious_low_confidence(0.01) benign(0.09) TCGA-50-6594-01 5 140788541 140788541 G T PCDHGB6 Missense_Mutation p.G258W 0.68 deleterious(0.02) probably_damaging(1) TCGA-50-6594-01 5 140812476 140812476 G - PCDHGA12 Frame_Shift_Del p.R718Afs*15 0.43 TCGA-50-6594-01 5 143586840 143586840 G T KCTD16 Missense_Mutation p.R188I 0.71 deleterious(0) possibly_damaging(0.541) TCGA-50-6594-01 5 147889330 147889330 G C HTR4 Silent p.T255T 0.76 TCGA-50-6594-01 5 150924435 150924435 G C FAT2 Missense_Mutation p.P2085A 0.76 probably_damaging(1) TCGA-50-6594-01 5 151166233 151166233 C T G3BP1 Nonsense_Mutation p.Q18* 0.71 TCGA-50-6594-01 5 156921692 156921692 C A ADAM19 Intron 0.77 TCGA-50-6594-01 5 175110971 175110971 C G HRH2 Missense_Mutation p.I245M 0.31 deleterious(0) probably_damaging(0.948) TCGA-50-6594-01 5 177473998 177473998 G T FAM153C Intron 0.32 TCGA-50-6594-01 5 178392950 178392950 G A ZNF454 Silent p.Q515Q 0.30 TCGA-50-6594-01 5 179192681 179192681 C G MAML1 Missense_Mutation p.L224V 0.19 tolerated(0.2) probably_damaging(0.987) TCGA-50-6594-01 5 180036999 180036999 C A FLT4 Missense_Mutation p.G1238V 0.26 deleterious(0.01) possibly_damaging(0.887) TCGA-50-6594-01 5 180037000 180037000 C A FLT4 Missense_Mutation p.G1238W 0.24 deleterious(0) probably_damaging(0.998) TCGA-50-6594-01 5 35904633 35904633 C A CAPSL 3'UTR 0.22 TCGA-50-6594-01 5 36671334 36671334 A T SLC1A3 Missense_Mutation p.R175W 0.16 deleterious(0) probably_damaging(1) TCGA-50-6594-01 5 39311461 39311461 C A C9 Missense_Mutation p.V297L 0.61 deleterious(0.02) possibly_damaging(0.766) TCGA-50-6594-01 5 41195923 41195923 G T C6 Silent p.P186P 0.58 TCGA-50-6594-01 5 43535036 43535036 G C PAIP1 Silent p.L372L 0.17 TCGA-50-6594-01 5 45262167 45262167 T C HCN1 Silent p.R843R 0.32 TCGA-50-6594-01 5 52376359 52376359 C G ITGA2 Missense_Mutation p.P983A 0.15 deleterious(0.02) probably_damaging(1) TCGA-50-6594-01 5 5306772 5306772 C A ADAMTS16 Nonsense_Mutation p.C1114* 0.16 TCGA-50-6594-01 5 54405931 54405931 C A GZMA Missense_Mutation p.P237H 0.22 deleterious(0.05) probably_damaging(0.965) TCGA-50-6594-01 5 55201965 55201965 C A IL31RA Nonsense_Mutation p.C367* 0.25 TCGA-50-6594-01 5 55471986 55471986 G T ANKRD55 Missense_Mutation p.T102N 0.25 tolerated(0.06) probably_damaging(1) TCGA-50-6594-01 5 71493793 71493793 C A MAP1B Silent p.G1537G 0.49 TCGA-50-6594-01 5 9629204 9629204 T G TAS2R1 3'UTR 0.71 TCGA-50-6594-01 5 9629953 9629953 G C TAS2R1 Nonsense_Mutation p.Y64* 0.20 TCGA-50-6594-01 6 101166053 101166053 T A ASCC3 Silent p.T659T 0.26 TCGA-50-6594-01 6 107100454 107100454 A G QRSL1 Silent p.P282P 0.17 TCGA-50-6594-01 6 116879196 116879196 C T FAM26D Missense_Mutation p.P113L 0.34 deleterious(0) probably_damaging(0.998) TCGA-50-6594-01 6 125366429 125366429 G T RNF217 Missense_Mutation p.V27F 0.35 tolerated(0.17) benign(0.243) TCGA-50-6594-01 6 130535490 130535490 T A SAMD3 Silent p.A87A 0.31 TCGA-50-6594-01 6 130762639 130762639 C A TMEM200A Missense_Mutation p.Q358K 0.24 tolerated(0.8) benign(0.038) TCGA-50-6594-01 6 132047241 132047241 G T ENPP3 Missense_Mutation p.K618N 0.27 tolerated(0.07) benign(0.033) TCGA-50-6594-01 6 133014272 133014272 C T VNN1 Missense_Mutation p.M239I 0.26 deleterious(0.01) benign(0.179) TCGA-50-6594-01 6 134301367 134301367 G A TBPL1 Missense_Mutation p.G35E 0.28 deleterious(0) probably_damaging(0.98) TCGA-50-6594-01 6 144263191 144263191 A T PLAGL1 Missense_Mutation p.S254R 0.30 tolerated(0.29) benign(0.087) TCGA-50-6594-01 6 150267592 150267592 G A ULBP2 Missense_Mutation p.G145E 0.28 deleterious(0) probably_damaging(0.944) TCGA-50-6594-01 6 152501421 152501421 T A SYNE1 Missense_Mutation p.L7770F 0.34 possibly_damaging(0.767) TCGA-50-6594-01 6 158532359 158532359 G T SERAC1 3'UTR 0.28 TCGA-50-6594-01 6 160888578 160888578 C G LPAL2 RNA 0.25 TCGA-50-6594-01 6 16130898 16130898 G T MYLIP Missense_Mutation p.M66I 0.57 tolerated(0.38) benign(0.006) TCGA-50-6594-01 6 165706873 165706873 A T C6orf118 Intron 0.32 TCGA-50-6594-01 6 165706874 165706874 T A C6orf118 Intron 0.32 TCGA-50-6594-01 6 169648614 169648614 G A THBS2 Silent p.L169L 0.24 TCGA-50-6594-01 6 29627268 29627268 T C MOG Silent p.D87D 0.60 TCGA-50-6594-01 6 31726371 31726371 C G MSH5 Missense_Mutation p.P397R 0.32 deleterious(0.04) benign(0.054) TCGA-50-6594-01 6 31913078 31913078 A G C2 Missense_Mutation p.M735V 0.54 tolerated(1) benign(0.001) TCGA-50-6594-01 6 36293104 36293104 T C C6orf222 Missense_Mutation p.Q375R 0.69 tolerated(0.64) benign(0.013) TCGA-50-6594-01 6 38840708 38840708 G T DNAH8 Missense_Mutation p.G2205C 0.33 probably_damaging(1) TCGA-50-6594-01 6 39271904 39271904 G T KCNK17 Missense_Mutation p.P173T 0.35 deleterious(0.01) possibly_damaging(0.572) TCGA-50-6594-01 6 42890818 42890818 G C PTCRA Missense_Mutation p.D38H 0.36 deleterious(0.01) probably_damaging(0.979) TCGA-50-6594-01 6 43019062 43019062 C G CUL7 Missense_Mutation p.E377Q 0.12 deleterious(0.03) benign(0.351) TCGA-50-6594-01 6 49989688 49989688 T A DEFB110 5'UTR 0.50 TCGA-50-6594-01 6 50791266 50791266 G T TFAP2B Silent p.P76P 0.50 TCGA-50-6594-01 6 52852158 52852158 C A GSTA4 Missense_Mutation p.D46Y 0.26 deleterious(0) benign(0.253) TCGA-50-6594-01 6 70894799 70894799 G T COL19A1 Nonsense_Mutation p.G950* 0.33 TCGA-50-6594-01 6 74073453 74073453 A C KHDC3L Missense_Mutation p.Q175P 0.43 tolerated(0.14) benign(0.002) TCGA-50-6594-01 7 100675916 100675916 A T MUC17 Missense_Mutation p.S407C 0.33 probably_damaging(0.971) TCGA-50-6594-01 7 100684439 100684439 G T MUC17 Missense_Mutation p.D3248Y 0.36 probably_damaging(0.99) TCGA-50-6594-01 7 101063285 101063285 G T COL26A1 Silent p.R62R 0.31 TCGA-50-6594-01 7 101183184 101183184 T G COL26A1 Missense_Mutation p.L153R 0.36 deleterious(0) probably_damaging(0.999) TCGA-50-6594-01 7 103183200 103183200 C T RELN Missense_Mutation p.D2217N 0.39 tolerated(0.1) probably_damaging(0.998) TCGA-50-6594-01 7 107600006 107600006 C A LAMB1 Intron 0.44 TCGA-50-6594-01 7 120608008 120608008 A G ING3 Missense_Mutation p.T193A 0.33 tolerated(0.77) benign(0.005) TCGA-50-6594-01 7 122635640 122635640 C G TAS2R16 Missense_Mutation p.E17Q 0.16 tolerated(0.12) probably_damaging(0.981) TCGA-50-6594-01 7 127223354 127223354 C T GCC1 Missense_Mutation p.A348T 0.37 tolerated(0.05) benign(0.016) TCGA-50-6594-01 7 127528055 127528055 G A SND1 Missense_Mutation p.A482T 0.29 deleterious(0) probably_damaging(0.998) TCGA-50-6594-01 7 128413825 128413825 C T OPN1SW Missense_Mutation p.A269T 0.39 deleterious(0.02) probably_damaging(0.955) TCGA-50-6594-01 7 128413885 128413885 G T OPN1SW Missense_Mutation p.R249S 0.43 deleterious(0) benign(0.44) TCGA-50-6594-01 7 133692564 133692564 G A EXOC4 Missense_Mutation p.R888Q 0.18 deleterious(0) probably_damaging(0.961) TCGA-50-6594-01 7 138604108 138604108 G T KIAA1549 Missense_Mutation p.S88R 0.34 deleterious(0) probably_damaging(0.956) TCGA-50-6594-01 7 140481411 140481411 C A BRAF Missense_Mutation p.G466V 0.36 deleterious(0) probably_damaging(0.936) TCGA-50-6594-01 7 142045608 142045608 C A TRBV4-2 Missense_Mutation p.L46M 0.25 deleterious(0.03) probably_damaging(0.927) TCGA-50-6594-01 7 142223821 142223821 C T TRBV11-1 Silent p.%3D 0.17 TCGA-50-6594-01 7 142364503 142364503 G A TRBV24-1 Silent p.K46K 0.24 TCGA-50-6594-01 7 143453540 143453540 C T CTAGE6 Silent p.V404V 0.13 TCGA-50-6594-01 7 149479975 149479975 G T SSPO RNA 0.19 TCGA-50-6594-01 7 151135214 151135214 G C CRYGN Missense_Mutation p.S46R 0.37 deleterious(0.01) probably_damaging(0.992) TCGA-50-6594-01 7 151962241 151962241 G T KMT2C Missense_Mutation p.Q356K 0.04 probably_damaging(0.983) TCGA-50-6594-01 7 156974295 156974295 G T UBE3C Missense_Mutation p.A234S 0.34 tolerated(0.15) possibly_damaging(0.541) TCGA-50-6594-01 7 157387960 157387960 C T PTPRN2 Silent p.P822P 0.28 TCGA-50-6594-01 7 20687598 20687598 G T ABCB5 Missense_Mutation p.S368I 0.33 tolerated(0.25) benign(0.185) TCGA-50-6594-01 7 22175692 22175692 G T RAPGEF5 Missense_Mutation p.P641T 0.12 deleterious(0) possibly_damaging(0.676) TCGA-50-6594-01 7 23213895 23213895 A G KLHL7 Missense_Mutation p.N580S 0.45 tolerated_low_confidence(0.07) benign(0.332) TCGA-50-6594-01 7 2949713 2949713 C T CARD11 Silent p.R1077R 0.30 TCGA-50-6594-01 7 32530016 32530016 A C LSM5 5'UTR 0.37 TCGA-50-6594-01 7 48547487 48547487 T A ABCA13 Missense_Mutation p.C4456S 0.43 probably_damaging(1) TCGA-50-6594-01 7 53103905 53103905 G T POM121L12 Missense_Mutation p.A181S 0.31 deleterious(0) possibly_damaging(0.728) TCGA-50-6594-01 7 57187552 57187552 C A ZNF479 Nonsense_Mutation p.E524* 0.39 TCGA-50-6594-01 7 6080771 6080771 G A EIF2AK1 Missense_Mutation p.R291C 0.06 tolerated(0.07) benign(0.001) TCGA-50-6594-01 7 69583203 69583203 G T AUTS2 Missense_Mutation p.R203L 0.41 deleterious(0) probably_damaging(0.969) TCGA-50-6594-01 7 80374574 80374574 C A SEMA3C Missense_Mutation p.R631L 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-50-6594-01 7 82585288 82585288 C A PCLO Nonsense_Mutation p.G1661* 0.41 TCGA-50-6594-01 7 83634655 83634655 C T SEMA3A Missense_Mutation p.D454N 0.36 deleterious(0) probably_damaging(0.994) TCGA-50-6594-01 7 93516687 93516687 G A TFPI2 Missense_Mutation p.R173C 0.33 deleterious(0.03) probably_damaging(0.965) TCGA-50-6594-01 7 93518455 93518459 TTAGA - TFPI2 Frame_Shift_Del p.N116Kfs*6 0.38 TCGA-50-6594-01 7 95442627 95442627 G T DYNC1I1 Missense_Mutation p.G115C 0.49 deleterious(0.03) possibly_damaging(0.572) TCGA-50-6594-01 7 97933593 97933593 C A BAIAP2L1 Missense_Mutation p.G446V 0.39 tolerated(0.1) benign(0.02) TCGA-50-6594-01 7 97949370 97949370 G A BAIAP2L1 Silent p.N116N 0.40 TCGA-50-6594-01 7 99799011 99799011 G A GATS 3'UTR 0.19 TCGA-50-6594-01 8 100168776 100168776 G A VPS13B Splice_Site p.X672_splice 0.12 TCGA-50-6594-01 8 113241000 113241000 T - CSMD3 Frame_Shift_Del p.Y3650Ffs*51 0.31 TCGA-50-6594-01 8 113326136 113326136 T A CSMD3 Silent p.I2565I 0.20 TCGA-50-6594-01 8 11420536 11420536 G T BLK Missense_Mutation p.G410V 0.48 deleterious(0) probably_damaging(1) TCGA-50-6594-01 8 116426509 116426509 G - TRPS1 Frame_Shift_Del p.L1210* 0.10 TCGA-50-6594-01 8 122626456 122626456 G A HAS2 Missense_Mutation p.L518F 0.55 tolerated(0.47) benign(0.299) TCGA-50-6594-01 8 133806689 133806689 G A PHF20L1 Silent p.E39E 0.20 TCGA-50-6594-01 8 134030139 134030139 C A TG Missense_Mutation p.Q2227K 0.37 deleterious(0.03) benign(0.216) TCGA-50-6594-01 8 139151240 139151240 C A FAM135B Missense_Mutation p.S1297I 0.51 deleterious(0) probably_damaging(1) TCGA-50-6594-01 8 143957750 143957750 G T CYP11B1 Silent p.T287T 0.24 TCGA-50-6594-01 8 39027465 39027465 A T ADAM32 Silent p.A288A 0.34 TCGA-50-6594-01 8 49644012 49644012 C A EFCAB1 Nonsense_Mutation p.G37* 0.29 TCGA-50-6594-01 8 52366224 52366224 T A PXDNL Silent p.G368G 0.30 TCGA-50-6594-01 8 53084901 53084901 C A ST18 Missense_Mutation p.D174Y 0.38 deleterious(0) possibly_damaging(0.67) TCGA-50-6594-01 8 53573726 53573726 C T RB1CC1 Missense_Mutation p.V492I 0.33 deleterious(0.02) probably_damaging(0.99) TCGA-50-6594-01 8 63502281 63502281 G T NKAIN3 Silent p.V67V 0.37 TCGA-50-6594-01 8 64098882 64098882 G A YTHDF3 Missense_Mutation p.V104I 0.32 tolerated(0.13) benign(0.396) TCGA-50-6594-01 8 70513913 70513913 G C SULF1 Missense_Mutation p.G304R 0.31 deleterious(0) benign(0.41) TCGA-50-6594-01 8 72754925 72754925 C A MSC Missense_Mutation p.A198S 0.33 tolerated(0.19) benign(0.056) TCGA-50-6594-01 8 73849569 73849569 C A KCNB2 Missense_Mutation p.P660H 0.30 tolerated_low_confidence(0.6) benign(0.001) TCGA-50-6594-01 8 77616460 77616460 C G ZFHX4 Missense_Mutation p.S46C 0.23 benign(0) TCGA-50-6594-01 8 77766151 77766163 AAAAAGCAGTGTT - ZFHX4 Frame_Shift_Del p.K2332Tfs*56 0.33 TCGA-50-6594-01 8 77776343 77776343 C A ZFHX4 Missense_Mutation p.H3465N 0.40 probably_damaging(0.946) TCGA-50-6594-01 8 8234236 8234236 T A SGK223 Silent p.G561G 0.65 TCGA-50-6594-01 8 87878781 87878781 G A CNBD1 Missense_Mutation p.V20M 0.37 deleterious(0) probably_damaging(0.998) TCGA-50-6594-01 9 123920368 123920368 T C CNTRL Missense_Mutation p.L1582P 0.59 probably_damaging(0.982) TCGA-50-6594-01 9 13150604 13150604 C A MPDZ Missense_Mutation p.G1179V 0.65 deleterious(0) probably_damaging(0.974) TCGA-50-6594-01 9 135102363 135102363 C A NTNG2 Silent p.R329R 0.36 TCGA-50-6594-01 9 138395820 138395820 G T MRPS2 Silent p.L244L 0.59 TCGA-50-6594-01 9 139650836 139650836 G A LCN8 Intron 0.83 TCGA-50-6594-01 9 38577895 38577895 T G ANKRD18A Missense_Mutation p.E833A 0.32 tolerated(0.35) benign(0) TCGA-50-6594-01 9 39103845 39103845 C T CNTNAP3 Missense_Mutation p.G811E 0.35 deleterious(0.02) possibly_damaging(0.801) TCGA-50-6594-01 9 43627265 43627265 G T SPATA31A6 Missense_Mutation p.H474Q 0.75 tolerated(0.47) possibly_damaging(0.58) TCGA-50-6594-01 9 5431905 5431905 G A PLGRKT Nonsense_Mutation p.R25* 0.11 TCGA-50-6594-01 9 6532950 6532950 C T GLDC 3'UTR 0.08 TCGA-50-6594-01 9 7049148 7049148 C T KDM4C Missense_Mutation p.P791L 0.69 tolerated(0.44) benign(0.119) TCGA-50-6594-01 9 79259674 79259674 C A PRUNE2 Missense_Mutation p.R2903S 0.57 deleterious(0) possibly_damaging(0.811) TCGA-50-6594-01 9 8340348 8340348 C A PTPRD Missense_Mutation p.G1750C 0.55 deleterious(0) probably_damaging(1) TCGA-50-6594-01 9 8340349 8340349 C T PTPRD Missense_Mutation p.M1749I 0.56 deleterious(0.01) possibly_damaging(0.797) TCGA-50-6594-01 9 97522631 97522631 G T C9orf3 Missense_Mutation p.R189L 0.52 deleterious(0.02) benign(0.031) TCGA-50-6594-01 9 99521205 99521205 G T ZNF510 Missense_Mutation p.T636N 0.59 deleterious(0.04) possibly_damaging(0.843) TCGA-50-6594-01 9 99799652 99799652 C - CTSV Frame_Shift_Del p.G93Vfs*34 0.40 TCGA-50-6594-01 X 100087795 100087795 C A CSTF2 Silent p.P368P 0.48 TCGA-50-6594-01 X 100105367 100105367 C T NOX1 Missense_Mutation p.M302I 0.50 tolerated(0.25) benign(0.034) TCGA-50-6594-01 X 100505910 100505910 C T DRP2 Missense_Mutation p.T568I 0.34 tolerated(0.13) benign(0.295) TCGA-50-6594-01 X 100505911 100505911 C A DRP2 Silent p.T568T 0.34 TCGA-50-6594-01 X 100509421 100509421 C T DRP2 Missense_Mutation p.S662F 0.38 deleterious(0) probably_damaging(0.962) TCGA-50-6594-01 X 101818278 101818278 G T NXF4 RNA 0.41 TCGA-50-6594-01 X 101969960 101969960 A - GPRASP2 Frame_Shift_Del p.K55Sfs*26 0.28 TCGA-50-6594-01 X 102003868 102003868 G C BHLHB9 5'UTR 0.24 TCGA-50-6594-01 X 102931732 102931732 G T MORF4L2 Missense_Mutation p.T75N 0.29 deleterious(0.01) possibly_damaging(0.641) TCGA-50-6594-01 X 103349150 103349150 C A SLC25A53 Missense_Mutation p.R264L 0.50 tolerated(0.12) possibly_damaging(0.633) TCGA-50-6594-01 X 105280839 105280839 C A SERPINA7 Missense_Mutation p.V71L 0.38 tolerated(0.2) probably_damaging(0.999) TCGA-50-6594-01 X 105281019 105281019 C - SERPINA7 Frame_Shift_Del p.V11Yfs*17 0.24 TCGA-50-6594-01 X 106034405 106034405 G T RNF128 Missense_Mutation p.G365V 0.38 tolerated(0.09) probably_damaging(1) TCGA-50-6594-01 X 108631889 108631889 C A GUCY2F Nonsense_Mutation p.E929* 0.32 TCGA-50-6594-01 X 110435808 110435808 G T PAK3 Missense_Mutation p.R354S 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-50-6594-01 X 110439861 110439861 C A PAK3 Missense_Mutation p.P503Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-50-6594-01 X 111698205 111698205 A T ZCCHC16 Silent p.T83T 0.34 TCGA-50-6594-01 X 113865275 113865275 C G HTR2C Intron 0.52 TCGA-50-6594-01 X 117739208 117739208 A T DOCK11 Missense_Mutation p.H857L 0.33 tolerated(0.3) benign(0.007) TCGA-50-6594-01 X 117770346 117770346 G T DOCK11 Missense_Mutation p.Q1308H 0.24 tolerated(0.57) benign(0.018) TCGA-50-6594-01 X 117782933 117782933 G T DOCK11 Missense_Mutation p.R1475I 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-50-6594-01 X 118124489 118124489 G T LONRF3 Missense_Mutation p.D461Y 0.37 deleterious(0) probably_damaging(0.996) TCGA-50-6594-01 X 118708874 118708874 G T UBE2A Missense_Mutation p.D19Y 0.41 deleterious(0) probably_damaging(0.982) TCGA-50-6594-01 X 119389209 119389209 C T ZBTB33 Nonsense_Mutation p.Q647* 0.27 TCGA-50-6594-01 X 122771948 122771948 G T THOC2 Missense_Mutation p.P623T 0.25 tolerated(0.27) possibly_damaging(0.854) TCGA-50-6594-01 X 12736044 12736044 T C FRMPD4 Silent p.D1033D 0.62 TCGA-50-6594-01 X 128710002 128710002 G T OCRL Missense_Mutation p.W614C 0.35 deleterious(0) probably_damaging(1) TCGA-50-6594-01 X 128925035 128925035 G - SASH3 Frame_Shift_Del p.L141Sfs*54 0.29 TCGA-50-6594-01 X 129055587 129055587 G A UTP14A Intron 0.36 TCGA-50-6594-01 X 129063440 129063440 G A UTP14A Silent p.K724K 0.34 TCGA-50-6594-01 X 129270036 129270036 C A AIFM1 Missense_Mutation p.R430L 0.31 deleterious(0) probably_damaging(0.991) TCGA-50-6594-01 X 129499532 129499532 G T SLC25A14 Missense_Mutation p.G246V 0.42 deleterious(0) probably_damaging(0.982) TCGA-50-6594-01 X 130411007 130411007 C A IGSF1 Silent p.S843S 0.37 TCGA-50-6594-01 X 130678719 130678719 C A OR13H1 Silent p.I224I 0.36 TCGA-50-6594-01 X 131762609 131762609 A G HS6ST2 Missense_Mutation p.L527S 0.36 deleterious(0) probably_damaging(1) TCGA-50-6594-01 X 132160099 132160099 G T USP26 Missense_Mutation p.T717N 0.44 deleterious(0.01) probably_damaging(0.983) TCGA-50-6594-01 X 135592352 135592352 G T HTATSF1 Missense_Mutation p.A346S 0.34 tolerated(0.13) benign(0.058) TCGA-50-6594-01 X 140995442 140995442 C T MAGEC1 Missense_Mutation p.T751I 0.32 deleterious_low_confidence(0) possibly_damaging(0.507) TCGA-50-6594-01 X 142718244 142718244 C G SLITRK4 Missense_Mutation p.W227C 0.33 deleterious(0) probably_damaging(0.996) TCGA-50-6594-01 X 142967583 142967583 G T UBE2NL Silent p.V127V 0.32 TCGA-50-6594-01 X 147030276 147030276 G T FMR1 Missense_Mutation p.R604L 0.36 deleterious_low_confidence(0.01) benign(0.44) TCGA-50-6594-01 X 151303053 151303053 G T MAGEA10 Missense_Mutation p.T347N 0.22 tolerated(0.06) benign(0.336) TCGA-50-6594-01 X 151336957 151336957 C A GABRA3 Missense_Mutation p.A408S 0.21 tolerated(0.84) benign(0.05) TCGA-50-6594-01 X 152037712 152037713 - C NSDHL 3'UTR 0.30 TCGA-50-6594-01 X 152938117 152938117 C T PNCK Missense_Mutation p.R118Q 0.11 tolerated(0.1) benign(0.005) TCGA-50-6594-01 X 153008744 153008744 G A ABCD1 Silent p.Q645Q 0.50 TCGA-50-6594-01 X 153035264 153035264 G T PLXNB3 Missense_Mutation p.C523F 0.16 deleterious(0) probably_damaging(1) TCGA-50-6594-01 X 153135652 153135652 G T L1CAM Missense_Mutation p.P284T 0.16 tolerated(0.15) benign(0.14) TCGA-50-6594-01 X 153716008 153716008 C G SLC10A3 Missense_Mutation p.Q424H 0.25 deleterious(0.02) benign(0.286) TCGA-50-6594-01 X 153906437 153906437 G T GAB3 3'UTR 0.22 TCGA-50-6594-01 X 153999154 153999154 G A DKC1 Missense_Mutation p.A346T 0.22 deleterious(0) possibly_damaging(0.686) TCGA-50-6594-01 X 154157135 154157135 T A F8 Missense_Mutation p.T1644S 0.57 tolerated(0.41) benign(0.007) TCGA-50-6594-01 X 2407837 2407838 - A ZBED1 Frame_Shift_Ins p.A310Gfs*25 0.34 TCGA-50-6594-01 X 33229438 33229438 G T DMD 5'UTR 0.25 TCGA-50-6594-01 X 37658310 37658310 C T CYBB Silent p.I259I 0.57 TCGA-50-6594-01 X 38080652 38080652 G - SRPX 5'Flank 0.47 TCGA-50-6594-01 X 41088907 41088907 C T USP9X Nonsense_Mutation p.Q2436* 0.15 TCGA-50-6594-01 X 44094637 44094637 C A EFHC2 Missense_Mutation p.C446F 0.29 tolerated(0.69) benign(0.056) TCGA-50-6594-01 X 47092493 47092493 G T USP11 Silent p.A60A 0.50 TCGA-50-6594-01 X 47092494 47092494 G T USP11 Missense_Mutation p.A61S 0.50 tolerated_low_confidence(0.25) benign(0.027) TCGA-50-6594-01 X 47497343 47497343 C A ELK1 Missense_Mutation p.G298V 0.27 tolerated(0.32) benign(0.002) TCGA-50-6594-01 X 48558670 48558670 G A SUV39H1 Silent p.L118L 0.20 TCGA-50-6594-01 X 48762039 48762039 C A SLC35A2 Nonsense_Mutation p.E383* 0.32 TCGA-50-6594-01 X 48972137 48972137 C A GPKOW Missense_Mutation p.D385Y 0.34 deleterious(0) probably_damaging(0.994) TCGA-50-6594-01 X 49048117 49048117 G T SYP Missense_Mutation p.P240H 0.56 tolerated(0.12) possibly_damaging(0.578) TCGA-50-6594-01 X 51639712 51639712 C A MAGED1 Missense_Mutation p.Q377K 0.41 deleterious_low_confidence(0.01) unknown(0) TCGA-50-6594-01 X 54817378 54817378 A G ITIH6 Silent p.L170L 0.38 TCGA-50-6594-01 X 67938333 67938333 C A STARD8 Missense_Mutation p.A526D 0.36 tolerated(0.07) benign(0.098) TCGA-50-6594-01 X 70341002 70341002 G A MED12 Silent p.Q245Q 0.24 TCGA-50-6594-01 X 70470376 70470376 G A ZMYM3 Missense_Mutation p.R327C 0.50 deleterious(0) probably_damaging(0.999) TCGA-50-6594-01 X 70614045 70614045 C T TAF1 Missense_Mutation p.S1139L 0.40 deleterious(0) probably_damaging(0.92) TCGA-50-6594-01 X 71425016 71425016 C A ERCC6L Nonsense_Mutation p.E1201* 0.41 TCGA-50-6594-01 X 73811822 73811822 C A RLIM Missense_Mutation p.R443L 0.37 tolerated(0.15) unknown(0) TCGA-50-6594-01 X 76920185 76920185 C A ATRX Nonsense_Mutation p.E1298* 0.31 TCGA-50-6594-01 X 76938467 76938468 GG T ATRX Frame_Shift_Del p.N760Kfs*8 0.19 TCGA-50-6594-01 X 76939995 76939995 C A ATRX Missense_Mutation p.K251N 0.41 probably_damaging(0.996) TCGA-50-6594-01 X 77112882 77112882 C A MAGT1 Missense_Mutation p.R200L 0.30 deleterious(0) possibly_damaging(0.733) TCGA-50-6594-01 X 78011509 78011509 G T LPAR4 3'UTR 0.30 TCGA-50-6594-01 X 83581269 83581269 G T HDX Missense_Mutation p.Q622K 0.33 deleterious(0.03) benign(0.022) TCGA-50-6594-01 X 84525804 84525804 G T ZNF711 Missense_Mutation p.C419F 0.27 deleterious(0) probably_damaging(1) TCGA-50-6594-01 X 91090681 91090681 G T PCDH11X Missense_Mutation p.A60S 0.27 tolerated(0.34) benign(0.012) TCGA-50-6594-01 X 91133455 91133455 G T PCDH11X Missense_Mutation p.C739F 0.37 tolerated(0.26) benign(0.021) TCGA-50-6594-01 X 99662981 99662981 G C PCDH19 Missense_Mutation p.S205R 0.35 tolerated(1) benign(0.115) TCGA-50-6595-01 10 108366980 108366980 G T SORCS1 Missense_Mutation p.L1037I 0.13 deleterious(0) possibly_damaging(0.843) TCGA-50-6595-01 10 118306827 118306827 G A PNLIP Missense_Mutation p.R23K 0.07 tolerated(0.11) benign(0.005) TCGA-50-6595-01 10 121431869 121431869 G T BAG3 Missense_Mutation p.G204W 0.15 deleterious(0) probably_damaging(1) TCGA-50-6595-01 10 135084565 135084565 C A ADAM8 Missense_Mutation p.A462S 0.17 deleterious(0.02) probably_damaging(0.991) TCGA-50-6595-01 10 76788256 76788256 A G KAT6B Missense_Mutation p.N1225S 0.06 benign(0.004) TCGA-50-6595-01 10 78674704 78674704 G A KCNMA1 Silent p.I985I 0.05 TCGA-50-6595-01 11 111750308 111750308 C T C11orf1 Silent p.C8C 0.12 TCGA-50-6595-01 11 118984675 118984675 C T C2CD2L Missense_Mutation p.L535F 0.06 deleterious(0) probably_damaging(1) TCGA-50-6595-01 11 36597424 36597424 C T RAG1 Missense_Mutation p.A857V 0.04 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-50-6595-01 11 60885646 60885646 G C CD5 Splice_Site p.X32_splice 0.05 TCGA-50-6595-01 11 64021894 64021894 C T PLCB3 Missense_Mutation p.S36F 0.08 deleterious(0) possibly_damaging(0.5) TCGA-50-6595-01 11 64603314 64603314 G C CDC42BPG Missense_Mutation p.Q560E 0.36 tolerated(0.31) possibly_damaging(0.612) TCGA-50-6595-01 11 78413335 78413335 G T TENM4 Silent p.V1441V 0.11 TCGA-50-6595-01 11 89883707 89883707 G C NAALAD2 Missense_Mutation p.E181Q 0.05 tolerated(0.16) benign(0.046) TCGA-50-6595-01 12 100453666 100453666 C A UHRF1BP1L Nonsense_Mutation p.E569* 0.05 TCGA-50-6595-01 12 64472704 64472704 G A SRGAP1 Silent p.K377K 0.06 TCGA-50-6595-01 12 69158481 69158481 C T SLC35E3 Intron 0.12 TCGA-50-6595-01 12 9013866 9013866 C A A2ML1 Missense_Mutation p.Q1159K 0.10 tolerated(1) benign(0) TCGA-50-6595-01 13 109707855 109707855 C T MYO16 Nonsense_Mutation p.Q1061* 0.07 TCGA-50-6595-01 13 26789520 26789520 C G RNF6 Missense_Mutation p.E167Q 0.10 deleterious(0.02) possibly_damaging(0.621) TCGA-50-6595-01 14 52734576 52734576 A - PTGDR Frame_Shift_Del p.G17Afs*5 0.11 TCGA-50-6595-01 14 64911421 64911421 G A MTHFD1 Missense_Mutation p.G716E 0.04 deleterious(0) probably_damaging(1) TCGA-50-6595-01 14 76198575 76198575 C G TTLL5 Intron 0.25 TCGA-50-6595-01 14 81251329 81251329 C A CEP128 Silent p.V707V 0.20 TCGA-50-6595-01 15 27772717 27772717 C T GABRG3 Missense_Mutation p.A335V 0.10 deleterious(0) probably_damaging(0.999) TCGA-50-6595-01 15 33359007 33359007 C T FMN1 Missense_Mutation p.G360E 0.07 tolerated(0.36) unknown(0) TCGA-50-6595-01 15 59192058 59192058 T C SLTM Missense_Mutation p.H223R 0.04 tolerated(0.35) unknown(0) TCGA-50-6595-01 16 2160594 2160594 A C PKD1 Missense_Mutation p.V1525G 0.29 probably_damaging(0.976) TCGA-50-6595-01 17 15207417 15207417 G A TEKT3 Missense_Mutation p.R437C 0.11 tolerated(0.09) benign(0.114) TCGA-50-6595-01 17 18219416 18219416 G A SMCR8 Missense_Mutation p.G105S 0.13 deleterious(0.01) probably_damaging(1) TCGA-50-6595-01 17 26942074 26942074 T A KIAA0100 3'UTR 0.04 TCGA-50-6595-01 17 60039133 60039133 G A MED13 Missense_Mutation p.P1691L 0.07 deleterious(0) probably_damaging(0.997) TCGA-50-6595-01 17 61559918 61559918 C G ACE Missense_Mutation p.L404V 0.06 tolerated(0.08) benign(0.109) TCGA-50-6595-01 17 7578382 7578382 G C TP53 Nonsense_Mutation p.S183* 0.07 TCGA-50-6595-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.09 tolerated(0.11) benign(0.308) TCGA-50-6595-01 18 29104409 29104409 A G DSG2 Splice_Site p.X231_splice 0.20 TCGA-50-6595-01 19 12813730 12813730 C T TNPO2 Missense_Mutation p.A738T 0.15 tolerated(0.55) benign(0.005) TCGA-50-6595-01 19 14262269 14262269 C T LPHN1 Missense_Mutation p.E1281K 0.12 deleterious(0) probably_damaging(0.926) TCGA-50-6595-01 19 19312474 19312474 G A RFXANK Silent p.E243E 0.05 TCGA-50-6595-01 19 44112203 44112203 C T ZNF428 Missense_Mutation p.E45K 0.24 deleterious_low_confidence(0.02) benign(0.037) TCGA-50-6595-01 19 44681620 44681620 C T ZNF226 Silent p.V735V 0.08 TCGA-50-6595-01 19 49575293 49575293 C T KCNA7 Missense_Mutation p.G184S 0.54 tolerated(0.5) benign(0.041) TCGA-50-6595-01 19 50548237 50548237 A T ZNF473 Silent p.T179T 0.16 TCGA-50-6595-01 19 56539579 56539579 G C NLRP5 Silent p.G660G 0.10 TCGA-50-6595-01 19 57869098 57869098 G C ZNF304 Missense_Mutation p.G621R 0.17 deleterious(0) probably_damaging(1) TCGA-50-6595-01 1 149859288 149859288 G C HIST2H2AB Missense_Mutation p.T60S 0.12 tolerated_low_confidence(0.1) benign(0.179) TCGA-50-6595-01 1 173735414 173735414 C T KLHL20 Silent p.L427L 0.06 TCGA-50-6595-01 1 174417353 174417353 G C GPR52 Missense_Mutation p.S35T 0.15 tolerated(0.56) benign(0.017) TCGA-50-6595-01 1 190068056 190068056 T A BRINP3 Missense_Mutation p.T465S 0.07 tolerated(0.24) benign(0) TCGA-50-6595-01 1 19612764 19612764 C T AKR7A3 Missense_Mutation p.R106Q 0.15 tolerated(0.32) benign(0.002) TCGA-50-6595-01 1 207085276 207085276 C T FAIM3 Missense_Mutation p.G170D 0.05 deleterious(0) benign(0.001) TCGA-50-6595-01 1 247588806 247588806 G C NLRP3 Missense_Mutation p.M687I 0.08 tolerated(0.44) benign(0.002) TCGA-50-6595-01 1 248790051 248790051 G A OR2T11 Silent p.L127L 0.05 TCGA-50-6595-01 1 32263879 32263879 G T SPOCD1 Missense_Mutation p.L692M 0.15 deleterious(0) probably_damaging(0.999) TCGA-50-6595-01 1 85487776 85487776 C T MCOLN3 Missense_Mutation p.V433M 0.07 deleterious(0.04) probably_damaging(0.999) TCGA-50-6595-01 20 23345668 23345668 C A GZF1 Nonsense_Mutation p.Y216* 0.11 TCGA-50-6595-01 20 62364617 62364617 C T ZGPAT Nonsense_Mutation p.Q211* 0.08 TCGA-50-6595-01 21 16338607 16338607 T C NRIP1 Missense_Mutation p.Q636R 0.06 deleterious(0) probably_damaging(0.986) TCGA-50-6595-01 22 39112766 39112766 C T GTPBP1 Missense_Mutation p.H199Y 0.16 deleterious(0) probably_damaging(0.995) TCGA-50-6595-01 22 50660468 50660468 C A TUBGCP6 Missense_Mutation p.V825L 0.14 tolerated(0.69) benign(0.004) TCGA-50-6595-01 2 121708991 121708991 T A GLI2 Missense_Mutation p.S143T 0.19 deleterious(0) benign(0.345) TCGA-50-6595-01 2 141526893 141526893 A G LRP1B Missense_Mutation p.Y1883H 0.25 benign(0.403) TCGA-50-6595-01 2 174229553 174229553 C T CDCA7 Missense_Mutation p.P244S 0.19 tolerated(0.47) benign(0.008) TCGA-50-6595-01 2 179446303 179446303 C G TTN Missense_Mutation p.R22231P 0.18 TCGA-50-6595-01 2 215884116 215884116 G C ABCA12 Missense_Mutation p.P534R 0.16 tolerated(0.14) possibly_damaging(0.748) TCGA-50-6595-01 2 240016554 240016554 C T HDAC4 Intron 0.37 TCGA-50-6595-01 2 25470495 25470495 A C DNMT3A Missense_Mutation p.W327G 0.24 deleterious(0.02) probably_damaging(1) TCGA-50-6595-01 2 84804447 84804447 G C DNAH6 Missense_Mutation p.R664T 0.22 tolerated(0.75) benign(0.002) TCGA-50-6595-01 3 100093992 100093992 C T TOMM70A Missense_Mutation p.R366Q 0.04 tolerated(0.13) benign(0.297) TCGA-50-6595-01 3 146166994 146166994 A G PLSCR2 Missense_Mutation p.I288T 0.07 deleterious(0.01) possibly_damaging(0.885) TCGA-50-6595-01 3 146167007 146167007 C G PLSCR2 Missense_Mutation p.A284P 0.09 deleterious(0) probably_damaging(0.997) TCGA-50-6595-01 3 169840403 169840403 A C PHC3 Missense_Mutation p.L640V 0.17 tolerated(0.35) benign(0.138) TCGA-50-6595-01 3 180327734 180327734 G A TTC14 Missense_Mutation p.E573K 0.10 tolerated_low_confidence(0.09) unknown(0) TCGA-50-6595-01 3 184081293 184081293 C T POLR2H Silent p.L5L 0.12 TCGA-50-6595-01 3 45637520 45637520 C G LIMD1 Silent p.L383L 0.13 TCGA-50-6595-01 3 78649390 78649390 C T ROBO1 Missense_Mutation p.S1605N 0.09 tolerated_low_confidence(0.41) probably_damaging(0.914) TCGA-50-6595-01 4 109665008 109665008 T A ETNPPL Missense_Mutation p.L436F 0.09 deleterious(0.04) possibly_damaging(0.526) TCGA-50-6595-01 4 146791527 146791527 G A ZNF827 Silent p.F617F 0.07 TCGA-50-6595-01 4 148796218 148796218 T C ARHGAP10 Missense_Mutation p.M250T 0.08 deleterious(0) possibly_damaging(0.885) TCGA-50-6595-01 4 52860582 52860582 G T LRRC66 Missense_Mutation p.A869D 0.06 tolerated(0.57) benign(0.024) TCGA-50-6595-01 4 68691511 68691511 C T TMPRSS11D Missense_Mutation p.G345E 0.05 deleterious(0) probably_damaging(1) TCGA-50-6595-01 4 8407736 8407736 C T ACOX3 Missense_Mutation p.G241E 0.10 deleterious(0) probably_damaging(0.997) TCGA-50-6595-01 5 131309043 131309043 G A ACSL6 Silent p.I373I 0.14 TCGA-50-6595-01 5 140208743 140208743 C T PCDHA6 Missense_Mutation p.S356F 0.05 deleterious_low_confidence(0.03) benign(0.399) TCGA-50-6595-01 5 50111358 50111358 G A PARP8 Silent p.Q556Q 0.07 TCGA-50-6595-01 6 118887202 118887202 C A CEP85L Missense_Mutation p.Q173H 0.11 tolerated(0.16) benign(0.009) TCGA-50-6595-01 6 126249904 126249904 G C NCOA7 Missense_Mutation p.W939S 0.22 deleterious(0) probably_damaging(1) TCGA-50-6595-01 6 146755808 146755808 C T GRM1 Missense_Mutation p.S1154L 0.11 deleterious_low_confidence(0) possibly_damaging(0.858) TCGA-50-6595-01 6 151670666 151670666 C A AKAP12 Silent p.P380P 0.06 TCGA-50-6595-01 6 167550481 167550481 G C CCR6 Missense_Mutation p.V255L 0.06 deleterious(0.02) possibly_damaging(0.766) TCGA-50-6595-01 6 26156807 26156807 G A HIST1H1E Silent p.K63K 0.11 TCGA-50-6595-01 6 52657701 52657701 C T GSTA1 Missense_Mutation p.V167I 0.06 tolerated(0.11) benign(0.379) TCGA-50-6595-01 7 121941978 121941978 G C FEZF1 3'UTR 0.07 TCGA-50-6595-01 7 142250928 142250928 A T TRBV6-4 Missense_Mutation p.L40Q 0.06 deleterious(0) probably_damaging(0.995) TCGA-50-6595-01 7 151855941 151855941 C A KMT2C Intron 0.07 TCGA-50-6595-01 7 37916489 37916489 G A NME8 Missense_Mutation p.D292N 0.07 tolerated(0.99) benign(0.001) TCGA-50-6595-01 7 55241708 55241708 G C EGFR Missense_Mutation p.G719A 0.28 deleterious(0) probably_damaging(0.933) TCGA-50-6595-01 7 55249005 55249005 G T EGFR Missense_Mutation p.S768I 0.25 deleterious(0) probably_damaging(1) TCGA-50-6595-01 7 72410488 72410488 G A POM121 Missense_Mutation p.R250Q 0.12 deleterious(0.04) possibly_damaging(0.858) TCGA-50-6595-01 7 73973268 73973268 G A GTF2IRD1 Missense_Mutation p.E761K 0.06 deleterious(0.03) possibly_damaging(0.685) TCGA-50-6595-01 7 87041236 87041236 C G ABCB4 Missense_Mutation p.G966A 0.09 tolerated(0.2) benign(0.392) TCGA-50-6595-01 7 96747030 96747030 G T ACN9 5'UTR 0.09 TCGA-50-6595-01 8 17421114 17421114 T C SLC7A2 Silent p.V598V 0.05 TCGA-50-6595-01 8 81426206 81426206 G T ZBTB10 Missense_Mutation p.L641F 0.15 tolerated(0.07) benign(0.005) TCGA-50-6595-01 8 86242016 86242016 C G CA1 Missense_Mutation p.D191H 0.17 tolerated(0.07) benign(0.181) TCGA-50-6595-01 9 103108428 103108428 C T TEX10 Missense_Mutation p.V355I 0.32 tolerated(0.21) benign(0.002) TCGA-50-6595-01 9 104238192 104238192 G A TMEM246 Missense_Mutation p.R395W 0.20 deleterious(0) possibly_damaging(0.642) TCGA-50-6595-01 9 120476638 120476638 C A TLR4 Missense_Mutation p.S744R 0.38 deleterious(0) probably_damaging(1) TCGA-50-6595-01 9 131219701 131219701 C T ODF2 Missense_Mutation p.S6L 0.05 deleterious_low_confidence(0) benign(0.058) TCGA-50-6595-01 9 131223324 131223324 G T ODF2 Missense_Mutation p.R76L 0.36 deleterious(0.02) benign(0.085) TCGA-50-6595-01 9 21974763 21974763 G - CDKN2A Frame_Shift_Del p.R22Gfs*4 0.17 TCGA-50-6595-01 9 21974767 21974767 C T CDKN2A Silent p.A20A 0.21 TCGA-50-6595-01 X 119064115 119064115 G C NKAP Missense_Mutation p.L313V 0.04 deleterious(0) unknown(0) TCGA-50-6595-01 X 142717050 142717050 T A SLITRK4 Missense_Mutation p.L625F 0.14 deleterious(0) probably_damaging(0.994) TCGA-50-6595-01 X 41555240 41555240 C G GPR34 Missense_Mutation p.N118K 0.04 deleterious(0.02) benign(0.169) TCGA-50-6595-01 X 46713257 46713257 G A RP2 Nonsense_Mutation p.W150* 0.07 TCGA-50-6595-01 X 53672299 53672299 C G HUWE1 Missense_Mutation p.R156S 0.04 probably_damaging(0.978) TCGA-50-6595-01 X 69960640 69960640 C T TEX11 Missense_Mutation p.V267I 0.09 tolerated(0.11) benign(0.15) TCGA-50-6595-01 X 86067912 86067912 C A DACH2 Missense_Mutation p.L432M 0.12 deleterious(0.03) probably_damaging(0.929) TCGA-50-6595-01 X 86069769 86069769 G T DACH2 Missense_Mutation p.R539L 0.08 tolerated(0.13) possibly_damaging(0.635) TCGA-50-6597-01 10 70097841 70097842 - T HNRNPH3 Intron 0.27 TCGA-50-6597-01 11 111753869 111753869 T G C11orf1 Missense_Mutation p.Y96D 0.16 tolerated(0.11) possibly_damaging(0.819) TCGA-50-6597-01 11 114393191 114393191 G C NXPE1 Missense_Mutation p.I239M 0.15 tolerated(0.22) benign(0.039) TCGA-50-6597-01 11 47261720 47261720 G A ACP2 Nonsense_Mutation p.Q407* 0.33 TCGA-50-6597-01 11 4929375 4929375 C G OR51A7 Missense_Mutation p.A259G 0.25 deleterious(0) benign(0.219) TCGA-50-6597-01 11 64533557 64533557 G C SF1 Intron 0.31 TCGA-50-6597-01 11 6503506 6503506 C T TIMM10B 3'UTR 0.21 TCGA-50-6597-01 11 70172763 70172763 G A PPFIA1 Missense_Mutation p.E257K 0.28 deleterious(0.04) benign(0.181) TCGA-50-6597-01 12 110783813 110783813 G A ATP2A2 Missense_Mutation p.E917K 0.14 deleterious(0) probably_damaging(0.996) TCGA-50-6597-01 12 51501129 51501129 G C TFCP2 Missense_Mutation p.P240A 0.32 deleterious(0.04) possibly_damaging(0.644) TCGA-50-6597-01 12 57539234 57539234 G A LRP1 Missense_Mutation p.V268M 0.07 possibly_damaging(0.563) TCGA-50-6597-01 12 63963073 63963073 C A DPY19L2 Missense_Mutation p.R686I 0.08 deleterious(0.01) possibly_damaging(0.637) TCGA-50-6597-01 12 8376143 8376143 G A FAM90A1 Missense_Mutation p.P112S 0.25 tolerated(0.46) benign(0.034) TCGA-50-6597-01 13 37427571 37427571 C T SMAD9 Silent p.R415R 0.20 TCGA-50-6597-01 14 23846421 23846421 C A CMTM5 5'UTR 0.11 TCGA-50-6597-01 14 77327095 77327095 G A C14orf166B Silent p.P388P 0.16 TCGA-50-6597-01 16 90128579 90128579 A G PRDM7 Missense_Mutation p.F211S 0.26 deleterious(0.04) possibly_damaging(0.829) TCGA-50-6597-01 17 15142888 15142888 G A PMP22 Silent p.I73I 0.20 TCGA-50-6597-01 17 57762973 57762973 C G CLTC Missense_Mutation p.S1544C 0.05 deleterious(0) probably_damaging(1) TCGA-50-6597-01 17 7311965 7311965 G A NLGN2 Missense_Mutation p.A131T 0.12 tolerated(0.29) probably_damaging(0.992) TCGA-50-6597-01 18 13760037 13760037 C G RNMT 3'UTR 0.19 TCGA-50-6597-01 19 1065435 1065435 C G ABCA7 3'UTR 0.49 TCGA-50-6597-01 19 20976601 20976601 C G ZNF66 Nonsense_Mutation p.S48* 0.06 TCGA-50-6597-01 19 39330800 39330800 T C AC104534.3 Missense_Mutation p.D7G 0.27 deleterious(0.01) unknown(0) TCGA-50-6597-01 19 55107879 55107879 A C LILRA1 Missense_Mutation p.Y395S 0.03 deleterious(0.01) probably_damaging(0.983) TCGA-50-6597-01 1 144874795 144874795 G A PDE4DIP Missense_Mutation p.R1605C 0.21 tolerated(0.07) probably_damaging(1) TCGA-50-6597-01 1 148023022 148023022 T C NBPF14 Missense_Mutation p.K163R 0.19 deleterious(0.03) possibly_damaging(0.774) TCGA-50-6597-01 1 158631093 158631093 G T SPTA1 Missense_Mutation p.N857K 0.37 tolerated(0.15) possibly_damaging(0.741) TCGA-50-6597-01 1 186057109 186057109 G T HMCN1 Nonsense_Mutation p.G3137* 0.08 TCGA-50-6597-01 1 186324846 186324846 G A TPR Missense_Mutation p.S648L 0.29 benign(0.307) TCGA-50-6597-01 1 215963477 215963477 T A USH2A Missense_Mutation p.K3369I 0.22 benign(0.163) TCGA-50-6597-01 1 215963479 215963479 C T USH2A Silent p.Q3368Q 0.22 TCGA-50-6597-01 1 231064840 231064840 C T TTC13 Splice_Site p.X434_splice 0.37 TCGA-50-6597-01 1 27332767 27332767 G A FAM46B Silent p.L316L 0.08 TCGA-50-6597-01 1 46083204 46083204 G A NASP Missense_Mutation p.G743R 0.05 deleterious(0) probably_damaging(0.997) TCGA-50-6597-01 1 65524127 65524127 C T MIR101-1 RNA 0.16 TCGA-50-6597-01 20 31890785 31890785 T C BPIFB1 Missense_Mutation p.F349L 0.17 tolerated(1) benign(0.002) TCGA-50-6597-01 20 34797690 34797690 C T EPB41L1 Missense_Mutation p.S650L 0.22 tolerated(0.37) benign(0.012) TCGA-50-6597-01 20 61598914 61598914 C T SLC17A9 3'UTR 0.47 TCGA-50-6597-01 20 62187706 62187706 C T C20orf195 Silent p.V230V 0.21 TCGA-50-6597-01 20 62187996 62187996 C T C20orf195 3'UTR 0.11 TCGA-50-6597-01 20 62234341 62234341 C T GMEB2 Missense_Mutation p.G112S 0.11 deleterious(0) probably_damaging(1) TCGA-50-6597-01 20 7866404 7866404 G A HAO1 Silent p.G307G 0.16 TCGA-50-6597-01 20 8782791 8782791 T C PLCB1 Intron 0.15 TCGA-50-6597-01 21 39671440 39671440 A G KCNJ15 Missense_Mutation p.Y86C 0.20 deleterious(0) probably_damaging(0.923) TCGA-50-6597-01 22 38824042 38824042 G A KCNJ4 Silent p.F32F 0.22 TCGA-50-6597-01 2 219301247 219301247 G A VIL1 Silent p.E623E 0.36 TCGA-50-6597-01 2 228762983 228762983 C T DAW1 Missense_Mutation p.H176Y 0.15 deleterious(0) probably_damaging(1) TCGA-50-6597-01 2 238280361 238280361 C T COL6A3 Intron 0.28 TCGA-50-6597-01 2 25057771 25057771 C T ADCY3 Missense_Mutation p.R566K 0.23 tolerated(0.21) benign(0.013) TCGA-50-6597-01 2 29296770 29296770 C G C2orf71 Missense_Mutation p.G120R 0.31 tolerated(0.07) possibly_damaging(0.668) TCGA-50-6597-01 2 37455407 37455407 C G CEBPZ Missense_Mutation p.R310P 0.24 deleterious(0.01) possibly_damaging(0.551) TCGA-50-6597-01 3 142133085 142133085 G A XRN1 Silent p.I495I 0.16 TCGA-50-6597-01 3 36484872 36484872 G A STAC Missense_Mutation p.R43Q 0.14 deleterious(0) benign(0.232) TCGA-50-6597-01 3 47451007 47451007 C T PTPN23 Missense_Mutation p.A633V 0.11 unknown(0) TCGA-50-6597-01 4 189012797 189012797 G A TRIML2 Silent p.T298T 0.17 TCGA-50-6597-01 5 170610377 170610377 T G RANBP17 Missense_Mutation p.F661V 0.29 deleterious(0.04) benign(0.024) TCGA-50-6597-01 6 110424684 110424684 G C WASF1 Missense_Mutation p.L264V 0.04 tolerated(0.15) unknown(0) TCGA-50-6597-01 6 111632428 111632428 G A REV3L Missense_Mutation p.T2880M 0.14 deleterious(0) probably_damaging(0.999) TCGA-50-6597-01 6 26466290 26466290 G A BTN2A1 Missense_Mutation p.R319Q 0.13 deleterious(0.04) benign(0.161) TCGA-50-6597-01 6 29911194 29911194 C T HLA-A Nonsense_Mutation p.Q165* 0.21 TCGA-50-6597-01 6 30522868 30522868 C G GNL1 Missense_Mutation p.E114Q 0.12 deleterious(0) probably_damaging(0.994) TCGA-50-6597-01 6 30522939 30522939 C T GNL1 Missense_Mutation p.R90K 0.18 tolerated(0.77) benign(0.002) TCGA-50-6597-01 6 38840727 38840727 G A DNAH8 Nonsense_Mutation p.W2211* 0.30 TCGA-50-6597-01 7 116412042 116412046 AGGTA C MET Splice_Site p.X1027_splice 0.32 TCGA-50-6597-01 7 120969620 120969620 G A WNT16 Splice_Site p.X32_splice 0.12 TCGA-50-6597-01 7 142640391 142640391 G A KEL Silent p.H581H 0.19 TCGA-50-6597-01 7 16640525 16640525 G A ANKMY2 Missense_Mutation p.P396L 0.05 tolerated_low_confidence(0.15) benign(0.001) TCGA-50-6597-01 7 28996325 28996325 G A AC005013.5 5'Flank 0.17 TCGA-50-6597-01 7 6803562 6803562 G A RSPH10B2 Missense_Mutation p.D135N 0.09 tolerated(0.2) benign(0.342) TCGA-50-6597-01 8 145773476 145773476 C T ARHGAP39 Missense_Mutation p.V332M 0.46 tolerated(1) benign(0.011) TCGA-50-6597-01 9 114293154 114293154 G A ZNF483 Splice_Site p.X138_splice 0.14 TCGA-50-6597-01 9 115651960 115651960 G A SLC46A2 Silent p.S334S 0.69 TCGA-50-6597-01 X 153698805 153698805 G C PLXNA3 Silent p.V1669V 0.33 TCGA-50-6597-01 X 24094881 24094881 G T EIF2S3 Missense_Mutation p.K466N 0.04 tolerated(0.14) benign(0.001) TCGA-50-6597-01 X 48046211 48046211 G A SSX5 3'UTR 0.28 TCGA-50-6597-01 X 48368171 48368171 G A PORCN 5'UTR 0.12 TCGA-50-6597-01 X 5811410 5811410 C T NLGN4X Nonsense_Mutation p.W633* 0.03 TCGA-50-6597-01 X 78427197 78427197 G A GPR174 Missense_Mutation p.M231I 0.41 deleterious(0.02) probably_damaging(0.998) TCGA-50-6597-01 X 86924389 86924389 C A KLHL4 Missense_Mutation p.H720N 0.10 deleterious_low_confidence(0) benign(0.216) TCGA-50-6673-01 10 104112253 104112253 A G GBF1 Missense_Mutation p.M188V 0.17 deleterious(0) possibly_damaging(0.54) TCGA-50-6673-01 10 108336983 108336983 A G SORCS1 Missense_Mutation p.V1198A 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-50-6673-01 10 108337011 108337011 T C SORCS1 Missense_Mutation p.T1189A 0.29 deleterious(0.03) probably_damaging(0.967) TCGA-50-6673-01 10 122280537 122280539 AAT - PPAPDC1A In_Frame_Del p.M126del 0.32 TCGA-50-6673-01 10 123845072 123845072 A T TACC2 Missense_Mutation p.E1019D 0.11 possibly_damaging(0.601) TCGA-50-6673-01 11 5809217 5809217 A T OR52N1 Missense_Mutation p.I277N 0.19 deleterious(0) probably_damaging(0.983) TCGA-50-6673-01 11 6898827 6898827 T C OR10A4 3'UTR 0.10 TCGA-50-6673-01 11 72408407 72408407 C T ARAP1 Missense_Mutation p.V972M 0.21 deleterious(0) benign(0.375) TCGA-50-6673-01 12 110503722 110503722 T C C12orf76 5'UTR 0.16 TCGA-50-6673-01 12 114793382 114793383 AG - TBX5 Frame_Shift_Del p.S504Cfs*14 0.24 TCGA-50-6673-01 12 125434579 125434579 C G DHX37 Silent p.R1081R 0.31 TCGA-50-6673-01 12 58007441 58007441 C T ARHGEF25 Intron 0.17 TCGA-50-6673-01 12 69107517 69107517 A G NUP107 Missense_Mutation p.T300A 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-50-6673-01 13 95818595 95818595 G - ABCC4 Frame_Shift_Del p.Y617* 0.11 TCGA-50-6673-01 14 106539276 106539276 C G IGHV1-8 Missense_Mutation p.D52H 0.15 tolerated(0.45) benign(0.001) TCGA-50-6673-01 14 29237174 29237174 G A FOXG1 Missense_Mutation p.R230H 0.30 deleterious(0) probably_damaging(1) TCGA-50-6673-01 14 65208417 65208417 G A PLEKHG3 Missense_Mutation p.E672K 0.28 deleterious(0) probably_damaging(0.999) TCGA-50-6673-01 15 41813100 41813100 G A RPAP1 Missense_Mutation p.P1095L 0.11 deleterious(0.02) possibly_damaging(0.676) TCGA-50-6673-01 16 46615942 46615942 G C SHCBP1 Missense_Mutation p.T573R 0.17 tolerated(0.21) benign(0.003) TCGA-50-6673-01 16 48201078 48201078 G T ABCC11 3'UTR 0.32 TCGA-50-6673-01 16 87870213 87870213 A - SLC7A5 Frame_Shift_Del p.F394Sfs*22 0.23 TCGA-50-6673-01 17 27493549 27493549 T C MYO18A Missense_Mutation p.K137R 0.11 tolerated_low_confidence(0.19) benign(0.02) TCGA-50-6673-01 17 28782439 28782439 T G CPD Missense_Mutation p.D1096E 0.06 tolerated(0.49) probably_damaging(0.999) TCGA-50-6673-01 17 46233865 46233865 C T SKAP1 Intron 0.16 TCGA-50-6673-01 17 7574018 7574018 G A TP53 Missense_Mutation p.R337C 0.49 tolerated(0.09) benign(0.344) TCGA-50-6673-01 18 63526954 63526954 A G CDH7 Missense_Mutation p.K502R 0.20 deleterious(0.03) benign(0.003) TCGA-50-6673-01 19 16035624 16035624 C A CYP4F11 Missense_Mutation p.M198I 0.20 deleterious(0) possibly_damaging(0.858) TCGA-50-6673-01 1 145474307 145474307 T G ANKRD34A Missense_Mutation p.S327A 0.38 tolerated(0.4) benign(0) TCGA-50-6673-01 1 159283480 159283480 C T OR10J3 Missense_Mutation p.A324T 0.17 tolerated_low_confidence(0.25) benign(0.001) TCGA-50-6673-01 1 173842711 173842711 A G ZBTB37 Intron 0.23 TCGA-50-6673-01 1 174418031 174418031 G A GPR52 Missense_Mutation p.R261H 0.29 tolerated(0.13) possibly_damaging(0.836) TCGA-50-6673-01 1 176668708 176668708 C A PAPPA2 Missense_Mutation p.H1073Q 0.07 tolerated(0.56) benign(0.008) TCGA-50-6673-01 1 197316538 197316538 G A CRB1 Nonsense_Mutation p.W306* 0.26 TCGA-50-6673-01 1 7700570 7700570 G A CAMTA1 Silent p.A207A 0.27 TCGA-50-6673-01 20 2845910 2845910 T G VPS16 Silent p.G707G 0.28 TCGA-50-6673-01 21 38555171 38555180 ATCACTGAAG - TTC3 Frame_Shift_Del p.S1572Rfs*43 0.21 TCGA-50-6673-01 21 47549151 47549151 C T COL6A2 Intron 0.16 TCGA-50-6673-01 22 24640618 24640618 C T GGT5 Missense_Mutation p.A26T 0.30 tolerated(0.27) benign(0.402) TCGA-50-6673-01 22 29091782 29091782 G A CHEK2 Missense_Mutation p.A435V 0.22 deleterious(0) probably_damaging(0.988) TCGA-50-6673-01 2 102955462 102955462 C A IL1RL1 Missense_Mutation p.P76Q 0.12 deleterious(0) probably_damaging(1) TCGA-50-6673-01 2 145147072 145147072 C T ZEB2 Silent p.G1197G 0.19 TCGA-50-6673-01 2 170488419 170488419 G A PPIG Missense_Mutation p.R302K 0.17 tolerated(1) unknown(0) TCGA-50-6673-01 2 170489767 170489767 T A PPIG Intron 0.16 TCGA-50-6673-01 2 179447908 179447908 A C TTN Silent p.T21874T 0.24 TCGA-50-6673-01 2 29222084 29222084 C T FAM179A Silent p.N59N 0.11 TCGA-50-6673-01 3 111685542 111685542 G T PHLDB2 Nonsense_Mutation p.E1054* 0.32 TCGA-50-6673-01 3 132319970 132319970 C T ACKR4 Silent p.L243L 0.28 TCGA-50-6673-01 3 149093484 149093484 A C TM4SF1 Missense_Mutation p.C84G 0.10 deleterious(0.02) benign(0.052) TCGA-50-6673-01 3 186570990 186570990 G A ADIPOQ Missense_Mutation p.G48D 0.35 deleterious(0) probably_damaging(1) TCGA-50-6673-01 3 195538661 195538661 G A MUC4 Missense_Mutation p.P10S 0.21 unknown(0) TCGA-50-6673-01 3 195538662 195538662 G C MUC4 Silent p.V9V 0.21 TCGA-50-6673-01 4 40122226 40122226 C G N4BP2 Missense_Mutation p.S832C 0.11 tolerated(0.05) benign(0.086) TCGA-50-6673-01 5 137521298 137521298 G A KIF20A Missense_Mutation p.R675Q 0.10 tolerated(0.09) probably_damaging(0.988) TCGA-50-6673-01 5 137776766 137776766 G A REEP2 Missense_Mutation p.V32M 0.31 deleterious(0) probably_damaging(0.99) TCGA-50-6673-01 5 140202657 140202658 - A PCDHA5 Frame_Shift_Ins p.S433Yfs*167 0.19 TCGA-50-6673-01 5 178541012 178541012 G A ADAMTS2 Silent p.P1164P 0.22 TCGA-50-6673-01 5 179151752 179151752 G A CANX Missense_Mutation p.G538E 0.50 tolerated(0.58) benign(0.001) TCGA-50-6673-01 5 180651713 180651713 C T TRIM41 Silent p.C238C 0.34 TCGA-50-6673-01 5 44388506 44388506 C G FGF10 Missense_Mutation p.E93D 0.31 tolerated(1) benign(0.001) TCGA-50-6673-01 6 119324685 119324686 - A FAM184A Frame_Shift_Ins p.K640* 0.23 TCGA-50-6673-01 6 144875916 144875916 T C UTRN Missense_Mutation p.W2341R 0.05 deleterious(0) probably_damaging(0.998) TCGA-50-6673-01 6 165848820 165848820 G A PDE10A Missense_Mutation p.R148C 0.17 deleterious(0.02) possibly_damaging(0.806) TCGA-50-6673-01 6 54214655 54214655 G T TINAG Missense_Mutation p.R347S 0.09 tolerated(0.16) possibly_damaging(0.486) TCGA-50-6673-01 7 27237722 27237722 T C HOXA13 3'UTR 0.20 TCGA-50-6673-01 7 55249017 55249018 - CCA EGFR In_Frame_Ins p.H773dup 0.49 TCGA-50-6673-01 9 98997839 98997839 C T HSD17B3 Missense_Mutation p.S279N 0.46 tolerated(0.69) benign(0.001) TCGA-50-6673-01 X 23412156 23412156 A G PTCHD1 Missense_Mutation p.I841V 0.30 tolerated(0.1) benign(0.355) TCGA-50-6673-01 X 48460281 48460281 C A WDR13 Missense_Mutation p.A314D 0.23 tolerated(0.14) benign(0.003) TCGA-50-6673-01 X 50094701 50094701 A G CCNB3 Nonstop_Mutation p.*1396Wext*6 0.09 TCGA-50-6673-01 X 68725635 68725635 C A FAM155B Missense_Mutation p.D170E 0.23 tolerated(0.2) probably_damaging(0.971) TCGA-50-7109-01 10 123976300 123976300 G C TACC2 Silent p.L2501L 0.23 TCGA-50-7109-01 10 132965122 132965122 C T TCERG1L Missense_Mutation p.A295T 0.24 tolerated(0.2) benign(0.007) TCGA-50-7109-01 10 135125341 135125342 - AT ZNF511 Frame_Shift_Ins p.R227Ifs*76 0.21 TCGA-50-7109-01 10 18250582 18250582 C G SLC39A12 Missense_Mutation p.Q112E 0.33 tolerated(0.24) benign(0.034) TCGA-50-7109-01 10 23321943 23321943 G T ARMC3 Missense_Mutation p.L800F 0.08 deleterious(0) probably_damaging(1) TCGA-50-7109-01 10 27538184 27538184 A T RP11-85G18.6 Intron 0.21 TCGA-50-7109-01 10 27702213 27702213 G T PTCHD3 Silent p.R323R 0.33 TCGA-50-7109-01 10 33217116 33217116 C A ITGB1 Silent p.L151L 0.13 TCGA-50-7109-01 10 48413613 48413613 C T GDF2 Missense_Mutation p.E419K 0.41 deleterious(0) probably_damaging(1) TCGA-50-7109-01 10 71332454 71332454 C A NEUROG3 Missense_Mutation p.D116Y 0.13 deleterious(0) probably_damaging(0.99) TCGA-50-7109-01 10 71332668 71332668 C T NEUROG3 Silent p.G44G 0.39 TCGA-50-7109-01 10 75506613 75506614 - A SEC24C Frame_Shift_Ins p.P9Tfs*167 0.16 TCGA-50-7109-01 10 7621754 7621754 A T ITIH5 Missense_Mutation p.V461E 0.11 deleterious(0) probably_damaging(0.921) TCGA-50-7109-01 10 82102070 82102070 C T DYDC1 Silent p.R99R 0.16 TCGA-50-7109-01 10 95129512 95129512 C T MYOF Missense_Mutation p.G827R 0.16 tolerated(0.06) benign(0.365) TCGA-50-7109-01 11 113935030 113935030 G C ZBTB16 Silent p.V336V 0.48 TCGA-50-7109-01 11 114393211 114393211 C G NXPE1 Missense_Mutation p.D233H 0.71 deleterious(0.02) probably_damaging(0.983) TCGA-50-7109-01 11 119181596 119181596 G A MCAM Missense_Mutation p.P555S 0.11 tolerated(0.17) benign(0.024) TCGA-50-7109-01 11 119185575 119185575 G T MCAM Missense_Mutation p.S123Y 0.47 tolerated(1) possibly_damaging(0.811) TCGA-50-7109-01 11 124135634 124135634 C A OR8G5 Missense_Mutation p.D304E 0.52 tolerated(0.08) benign(0.101) TCGA-50-7109-01 11 124189266 124189266 C T OR8D2 Silent p.V276V 0.14 TCGA-50-7109-01 11 132016251 132016251 G A NTM Silent p.K81K 0.50 TCGA-50-7109-01 11 1629050 1629050 C A KRTAP5-3 Missense_Mutation p.C189F 0.32 deleterious(0) unknown(0) TCGA-50-7109-01 11 18764013 18764013 G T PTPN5 Missense_Mutation p.T174N 0.28 tolerated(0.55) benign(0.019) TCGA-50-7109-01 11 19252381 19252381 C A E2F8 Missense_Mutation p.G356V 0.30 tolerated(0.3) benign(0.014) TCGA-50-7109-01 11 27680088 27680088 C T BDNF Missense_Mutation p.M90I 0.28 tolerated(0.15) benign(0.216) TCGA-50-7109-01 11 4967817 4967817 T A OR51A4 Nonsense_Mutation p.K172* 0.10 TCGA-50-7109-01 11 4976042 4976042 C A OR51A2 Missense_Mutation p.R301I 0.65 deleterious(0.01) benign(0.18) TCGA-50-7109-01 11 55607071 55607071 G T OR5D16 Missense_Mutation p.V282L 0.19 deleterious(0.03) benign(0.13) TCGA-50-7109-01 11 56113889 56113889 C A OR8K1 Silent p.A125A 0.27 TCGA-50-7109-01 11 56468517 56468517 C T OR9G1 Silent p.L218L 0.06 TCGA-50-7109-01 11 5776344 5776344 A G OR52N4 Missense_Mutation p.Y125C 0.33 deleterious(0.02) benign(0.076) TCGA-50-7109-01 11 5862466 5862466 C A OR52E6 Missense_Mutation p.R221M 0.22 tolerated(0.21) possibly_damaging(0.721) TCGA-50-7109-01 11 61300564 61300564 G C SYT7 Missense_Mutation p.A158G 0.19 tolerated_low_confidence(0.07) benign(0.186) TCGA-50-7109-01 11 62065047 62065047 C T SCGB1D4 Missense_Mutation p.A47T 0.16 tolerated(0.19) possibly_damaging(0.687) TCGA-50-7109-01 11 6341340 6341340 G A PRKCDBP Missense_Mutation p.H123Y 0.14 deleterious(0.01) possibly_damaging(0.49) TCGA-50-7109-01 11 65721153 65721153 G A TSGA10IP RNA 0.41 TCGA-50-7109-01 11 6648071 6648071 G A DCHS1 Missense_Mutation p.R2067C 0.26 deleterious(0) probably_damaging(0.999) TCGA-50-7109-01 11 67396390 67396390 C T NUDT8 Silent p.P109P 0.25 TCGA-50-7109-01 11 7065050 7065050 C A NLRP14 Missense_Mutation p.A598E 0.34 deleterious(0) possibly_damaging(0.807) TCGA-50-7109-01 11 76371795 76371795 G T LRRC32 Missense_Mutation p.T281K 0.52 tolerated(0.13) benign(0.028) TCGA-50-7109-01 11 86209034 86209034 C T ME3 Missense_Mutation p.V226M 0.54 deleterious(0) probably_damaging(0.975) TCGA-50-7109-01 12 108589931 108589931 G T WSCD2 Missense_Mutation p.G108C 0.20 tolerated(0.06) probably_damaging(0.924) TCGA-50-7109-01 12 108604067 108604067 G T WSCD2 Nonsense_Mutation p.E223* 0.40 TCGA-50-7109-01 12 108634285 108634285 A G WSCD2 Missense_Mutation p.I437V 0.19 tolerated(0.12) benign(0.009) TCGA-50-7109-01 12 110222182 110222182 C A TRPV4 Silent p.P799P 0.32 TCGA-50-7109-01 12 11420809 11420809 G - PRB3 Frame_Shift_Del p.P125Hfs*195 0.12 TCGA-50-7109-01 12 116452946 116452946 C A MED13L Missense_Mutation p.W381C 0.11 deleterious(0) unknown(0) TCGA-50-7109-01 12 116452947 116452947 C G MED13L Missense_Mutation p.W381S 0.11 tolerated(0.05) unknown(0) TCGA-50-7109-01 12 283807 283807 G T IQSEC3 Missense_Mutation p.G1053W 0.52 deleterious(0) benign(0.291) TCGA-50-7109-01 12 30792602 30792602 C A IPO8 Missense_Mutation p.R779L 0.11 deleterious(0) probably_damaging(0.985) TCGA-50-7109-01 12 52886588 52886588 C A KRT6A Missense_Mutation p.V129L 0.12 tolerated(0.06) possibly_damaging(0.566) TCGA-50-7109-01 12 6672656 6672656 C T NOP2 Missense_Mutation p.R271Q 0.14 tolerated(0.58) benign(0.17) TCGA-50-7109-01 12 75763886 75763886 C T GLIPR1L1 Missense_Mutation p.T211M 0.09 tolerated(0.19) benign(0.004) TCGA-50-7109-01 12 78562599 78562599 A G NAV3 Missense_Mutation p.Q1645R 0.38 deleterious(0.01) benign(0.024) TCGA-50-7109-01 12 86199250 86199250 G C RASSF9 Missense_Mutation p.R180G 0.35 tolerated(0.27) benign(0.041) TCGA-50-7109-01 13 29008234 29008234 C A FLT1 Missense_Mutation p.G213W 0.43 deleterious(0) probably_damaging(0.998) TCGA-50-7109-01 13 38237769 38237769 C T TRPC4 Missense_Mutation p.R491H 0.33 deleterious(0) probably_damaging(0.946) TCGA-50-7109-01 13 88327901 88327901 C T SLITRK5 Silent p.L86L 0.26 TCGA-50-7109-01 14 103601623 103601623 C T TNFAIP2 Missense_Mutation p.R631W 0.06 deleterious(0.01) probably_damaging(0.993) TCGA-50-7109-01 14 106174156 106174156 G T IGHA1 Silent p.S211S 0.35 TCGA-50-7109-01 14 107078617 107078617 G T IGHV1-58 Nonsense_Mutation p.S36* 0.32 TCGA-50-7109-01 14 23792633 23792633 C G PABPN1 Silent p.G194G 0.10 TCGA-50-7109-01 14 26917552 26917552 C A NOVA1 Silent p.T379T 0.22 TCGA-50-7109-01 14 26917570 26917570 G A NOVA1 Silent p.G373G 0.16 TCGA-50-7109-01 14 31204908 31204908 A T SCFD1 3'UTR 0.13 TCGA-50-7109-01 14 57675202 57675202 T C EXOC5 3'UTR 0.32 TCGA-50-7109-01 14 78205108 78205127 GCATGATTCATACCGGATAT ACATG SNW1 Splice_Site p.X176_splice 0.23 TCGA-50-7109-01 14 94413696 94413696 T C ASB2 Missense_Mutation p.R351G 0.29 tolerated(0.33) benign(0.004) TCGA-50-7109-01 15 24923001 24923001 A T NPAP1 Missense_Mutation p.S663C 0.17 tolerated(0.05) benign(0.417) TCGA-50-7109-01 15 27573971 27573971 G C GABRG3 Missense_Mutation p.E170D 0.20 tolerated(0.23) possibly_damaging(0.713) TCGA-50-7109-01 15 31197996 31197996 G T FAN1 Missense_Mutation p.R377L 0.20 deleterious(0.02) possibly_damaging(0.604) TCGA-50-7109-01 15 31197997 31197997 G T FAN1 Silent p.R377R 0.21 TCGA-50-7109-01 15 34016317 34016317 A T RYR3 Silent p.A2284A 0.45 TCGA-50-7109-01 15 57524917 57524917 C T TCF12 Missense_Mutation p.P278L 0.14 tolerated(0.06) probably_damaging(1) TCGA-50-7109-01 15 65219162 65219162 C T ANKDD1A Silent p.L178L 0.20 TCGA-50-7109-01 15 79760677 79760677 G T KIAA1024 Missense_Mutation p.C901F 0.17 deleterious(0) probably_damaging(1) TCGA-50-7109-01 15 90023607 90023608 - T RHCG Frame_Shift_Ins p.H185Qfs*114 0.17 TCGA-50-7109-01 16 2050050 2050050 G A ZNF598 Silent p.P500P 0.23 TCGA-50-7109-01 16 46766575 46766575 G T MYLK3 Missense_Mutation p.S336Y 0.38 deleterious(0) possibly_damaging(0.868) TCGA-50-7109-01 16 56685816 56685816 C A MT1B 5'UTR 0.28 TCGA-50-7109-01 16 56685817 56685817 C G MT1B 5'UTR 0.28 TCGA-50-7109-01 16 68156767 68156767 A T NFATC3 Silent p.P327P 0.17 TCGA-50-7109-01 16 70913523 70913523 A C HYDIN Missense_Mutation p.L3451W 0.09 probably_damaging(0.966) TCGA-50-7109-01 16 81965179 81965179 G T PLCG2 Nonsense_Mutation p.E887* 0.21 TCGA-50-7109-01 16 83999018 83999018 G T OSGIN1 Silent p.A280A 0.16 TCGA-50-7109-01 16 87525384 87525384 C A ZCCHC14 Missense_Mutation p.R17L 0.19 deleterious(0) probably_damaging(0.992) TCGA-50-7109-01 16 88061220 88061220 C T BANP Missense_Mutation p.R335W 0.19 deleterious(0) probably_damaging(0.998) TCGA-50-7109-01 17 10265755 10265755 G A MYH13 Silent p.D90D 0.24 TCGA-50-7109-01 17 10346844 10346844 C A MYH4 Nonsense_Mutation p.E1890* 0.22 TCGA-50-7109-01 17 26695911 26695911 G T VTN Silent p.R270R 0.47 TCGA-50-7109-01 17 27958980 27958980 T A SSH2 Missense_Mutation p.T1051S 0.52 tolerated_low_confidence(0.32) benign(0.01) TCGA-50-7109-01 17 30202318 30202318 T C UTP6 Missense_Mutation p.I414V 0.34 tolerated(0.37) benign(0.005) TCGA-50-7109-01 17 31258565 31258565 G T TMEM98 Missense_Mutation p.V7F 0.64 tolerated(0.12) benign(0.403) TCGA-50-7109-01 17 31258574 31258574 G T TMEM98 Missense_Mutation p.G10C 0.59 deleterious(0) probably_damaging(0.965) TCGA-50-7109-01 17 31258575 31258575 G T TMEM98 Missense_Mutation p.G10V 0.59 deleterious(0.01) probably_damaging(0.953) TCGA-50-7109-01 17 40384145 40384145 T C STAT5B Translation_Start_Site p.M1? 0.19 deleterious(0.03) possibly_damaging(0.678) TCGA-50-7109-01 17 42336641 42336641 C A SLC4A1 Missense_Mutation p.V256L 0.33 tolerated(0.52) benign(0.001) TCGA-50-7109-01 17 48190269 48190269 G T SAMD14 Silent p.A442A 0.29 TCGA-50-7109-01 17 48917105 48917105 C A WFIKKN2 Silent p.T152T 0.36 TCGA-50-7109-01 17 65944403 65944403 A T BPTF Missense_Mutation p.D2636V 0.28 probably_damaging(0.997) TCGA-50-7109-01 17 73663437 73663437 G T SAP30BP 5'UTR 0.31 TCGA-50-7109-01 17 74163145 74163145 T A RNF157 Missense_Mutation p.Q169L 0.10 deleterious(0.01) probably_damaging(0.964) TCGA-50-7109-01 17 76831489 76831489 C A USP36 Silent p.R116R 0.23 TCGA-50-7109-01 17 7754426 7754426 A G KDM6B Missense_Mutation p.D1254G 0.14 possibly_damaging(0.888) TCGA-50-7109-01 17 77757821 77757821 G T CBX2 Silent p.L193L 0.37 TCGA-50-7109-01 17 78291021 78291021 G - RNF213 Frame_Shift_Del p.A949Rfs*39 0.20 TCGA-50-7109-01 17 9489141 9489141 A T WDR16 Missense_Mutation p.Y41F 0.21 tolerated(0.07) benign(0.103) TCGA-50-7109-01 17 9489143 9489143 C T WDR16 Missense_Mutation p.P42S 0.20 tolerated(0.06) possibly_damaging(0.607) TCGA-50-7109-01 18 13825772 13825772 C A MC5R Missense_Mutation p.S3Y 0.22 tolerated_low_confidence(0.13) benign(0.08) TCGA-50-7109-01 18 22806904 22806904 G T ZNF521 Nonsense_Mutation p.Y326* 0.17 TCGA-50-7109-01 18 25616436 25616436 G T CDH2 Intron 0.21 TCGA-50-7109-01 18 47317871 47317871 T A ACAA2 Silent p.V284V 0.31 TCGA-50-7109-01 18 67992499 67992499 G T SOCS6 Nonsense_Mutation p.G199* 0.14 TCGA-50-7109-01 18 6978269 6978269 G C LAMA1 Missense_Mutation p.T2039R 0.16 tolerated(0.07) probably_damaging(0.974) TCGA-50-7109-01 18 7231236 7231236 C G LRRC30 Missense_Mutation p.L34V 0.23 deleterious(0.01) benign(0.024) TCGA-50-7109-01 18 9792205 9792205 C A RAB31 Silent p.L58L 0.37 TCGA-50-7109-01 19 1220486 1220486 C A STK11 Silent p.S193S 0.50 TCGA-50-7109-01 19 1360189 1360189 C T MUM1 Missense_Mutation p.S91L 0.22 deleterious(0) probably_damaging(0.924) TCGA-50-7109-01 19 2213721 2213721 G A DOT1L Intron 0.50 TCGA-50-7109-01 19 39104688 39104688 C T MAP4K1 Missense_Mutation p.R152K 0.04 tolerated(1) benign(0.005) TCGA-50-7109-01 19 39915411 39915411 C G PLEKHG2 Missense_Mutation p.P1213R 0.06 deleterious_low_confidence(0.05) benign(0.303) TCGA-50-7109-01 19 42219069 42219069 C A CEACAM5 Missense_Mutation p.L202I 0.53 tolerated(0.26) probably_damaging(0.939) TCGA-50-7109-01 19 49920437 49920437 G C CCDC155 Missense_Mutation p.Q487H 0.61 tolerated_low_confidence(0.15) benign(0.014) TCGA-50-7109-01 19 50473269 50473269 C A SIGLEC16 RNA 0.18 TCGA-50-7109-01 19 51914258 51914258 G A SIGLEC10 3'UTR 0.39 TCGA-50-7109-01 19 54745927 54745927 G C LILRA6 Missense_Mutation p.S110R 0.08 deleterious(0) probably_damaging(1) TCGA-50-7109-01 19 55086759 55086759 G T LILRA2 Missense_Mutation p.G231V 0.15 deleterious(0.01) probably_damaging(0.919) TCGA-50-7109-01 19 55146111 55146111 G T LILRB1 Silent p.G461G 0.51 TCGA-50-7109-01 19 56369436 56369436 T C NLRP4 Missense_Mutation p.L226P 0.25 deleterious(0) probably_damaging(0.996) TCGA-50-7109-01 19 7764626 7764626 T G FCER2 Silent p.S7S 0.45 TCGA-50-7109-01 19 8121118 8121118 G A CCL25 Silent p.Q52Q 0.62 TCGA-50-7109-01 19 9024194 9024194 C A MUC16 Missense_Mutation p.G12360W 0.38 probably_damaging(0.938) TCGA-50-7109-01 1 10423341 10423341 G T KIF1B Silent p.S1389S 0.22 TCGA-50-7109-01 1 111892810 111892810 G C PIFO Missense_Mutation p.V158L 0.17 deleterious(0.04) possibly_damaging(0.668) TCGA-50-7109-01 1 1147438 1147438 G C TNFRSF4 Missense_Mutation p.A173G 0.23 tolerated(0.05) benign(0.025) TCGA-50-7109-01 1 119427921 119427921 C A TBX15 Missense_Mutation p.G309W 0.37 tolerated(0.07) probably_damaging(0.988) TCGA-50-7109-01 1 152785055 152785055 A G LCE1B Missense_Mutation p.S45G 0.12 tolerated_low_confidence(0.2) unknown(0) TCGA-50-7109-01 1 154942963 154942963 G A SHC1 Missense_Mutation p.R14W 0.06 deleterious(0) probably_damaging(0.942) TCGA-50-7109-01 1 156941609 156941609 C T ARHGEF11 Splice_Site p.X195_splice 0.33 TCGA-50-7109-01 1 160259730 160259730 A T COPA 3'UTR 0.17 TCGA-50-7109-01 1 168513210 168513210 G A XCL2 5'UTR 0.52 TCGA-50-7109-01 1 170931105 170931105 A C MROH9 Silent p.L121L 0.19 TCGA-50-7109-01 1 19186125 19186125 G A TAS1R2 Silent p.S10S 0.11 TCGA-50-7109-01 1 19199453 19199453 T A ALDH4A1 Splice_Site p.X527_splice 0.14 TCGA-50-7109-01 1 197396748 197396748 G T CRB1 Missense_Mutation p.V765F 0.28 deleterious(0) probably_damaging(0.971) TCGA-50-7109-01 1 201291167 201291167 C A PKP1 Missense_Mutation p.P491H 0.27 deleterious(0) probably_damaging(0.999) TCGA-50-7109-01 1 203472092 203472092 T C OPTC Silent p.S261S 0.19 TCGA-50-7109-01 1 204948500 204948500 C T NFASC Silent p.V663V 0.36 TCGA-50-7109-01 1 210857201 210857201 C T KCNH1 Missense_Mutation p.V798I 0.09 tolerated_low_confidence(0.44) benign(0.001) TCGA-50-7109-01 1 215813954 215813954 G T USH2A Missense_Mutation p.R4972S 0.23 possibly_damaging(0.755) TCGA-50-7109-01 1 227268619 227268619 C A CDC42BPA Missense_Mutation p.A819S 0.09 tolerated(0.07) benign(0.279) TCGA-50-7109-01 1 227348297 227348297 G C CDC42BPA Missense_Mutation p.H214D 0.55 deleterious(0) probably_damaging(1) TCGA-50-7109-01 1 228487741 228487741 G T OBSCN Missense_Mutation p.G4545W 0.10 probably_damaging(1) TCGA-50-7109-01 1 232534943 232534943 G T SIPA1L2 Missense_Mutation p.S1700Y 0.08 deleterious(0) probably_damaging(0.998) TCGA-50-7109-01 1 237995907 237995907 G T RYR2 Missense_Mutation p.G4955V 0.23 probably_damaging(0.972) TCGA-50-7109-01 1 241901781 241901781 G C WDR64 Missense_Mutation p.M427I 0.24 tolerated(0.39) benign(0.126) TCGA-50-7109-01 1 241904880 241904880 C A WDR64 Missense_Mutation p.H452N 0.33 deleterious(0.01) possibly_damaging(0.675) TCGA-50-7109-01 1 241907716 241907716 C A WDR64 Missense_Mutation p.L488I 0.22 tolerated(0.38) benign(0.027) TCGA-50-7109-01 1 247695565 247695565 C A OR2C3 Silent p.L83L 0.26 TCGA-50-7109-01 1 31898638 31898638 G C SERINC2 Missense_Mutation p.G172A 0.22 deleterious(0) probably_damaging(0.981) TCGA-50-7109-01 1 54427706 54427706 G T LRRC42 Splice_Site p.X242_splice 0.25 TCGA-50-7109-01 1 68659582 68659582 C A WLS Intron 0.27 TCGA-50-7109-01 1 75596413 75596413 G C LHX8 Missense_Mutation p.S5T 0.17 unknown(0) TCGA-50-7109-01 1 77806129 77806129 A G AK5 Missense_Mutation p.K256R 0.22 tolerated(0.23) benign(0.314) TCGA-50-7109-01 1 79002247 79002247 G T PTGFR Missense_Mutation p.A319S 0.17 tolerated(0.1) benign(0.146) TCGA-50-7109-01 1 89477519 89477519 G T GBP3 Missense_Mutation p.L354M 0.30 tolerated(0.07) benign(0.058) TCGA-50-7109-01 1 92948583 92948583 C A GFI1 Missense_Mutation p.G46W 0.08 deleterious(0.04) possibly_damaging(0.808) TCGA-50-7109-01 20 18296354 18296354 A G ZNF133 Missense_Mutation p.I286V 0.14 tolerated(0.42) probably_damaging(0.967) TCGA-50-7109-01 20 24565489 24565489 C T SYNDIG1 Intron 0.08 TCGA-50-7109-01 20 30785287 30785287 G A PLAGL2 Silent p.S153S 0.11 TCGA-50-7109-01 20 31756934 31756934 C A BPIFA2 Intron 0.17 TCGA-50-7109-01 20 36874455 36874455 G T KIAA1755 Missense_Mutation p.P26H 0.36 deleterious(0) probably_damaging(0.996) TCGA-50-7109-01 20 40877433 40877433 C T PTPRT Missense_Mutation p.E736K 0.20 deleterious(0) possibly_damaging(0.874) TCGA-50-7109-01 20 44511423 44511423 G T ZSWIM1 Missense_Mutation p.Q64H 0.40 deleterious(0) probably_damaging(0.999) TCGA-50-7109-01 20 45195002 45195002 C A SLC13A3 Missense_Mutation p.G454W 0.20 deleterious(0.01) probably_damaging(0.928) TCGA-50-7109-01 20 45801492 45801492 A T EYA2 Missense_Mutation p.N392I 0.23 deleterious(0) possibly_damaging(0.668) TCGA-50-7109-01 20 55906984 55906984 C G SPO11 Nonsense_Mutation p.S76* 0.16 TCGA-50-7109-01 20 61452879 61452879 C A COL9A3 Silent p.P122P 0.18 TCGA-50-7109-01 21 10920121 10920121 T A TPTE Missense_Mutation p.H378L 0.12 tolerated(0.08) benign(0.011) TCGA-50-7109-01 21 15538703 15538703 C G LIPI Missense_Mutation p.C259S 0.12 deleterious(0) probably_damaging(0.999) TCGA-50-7109-01 21 15753847 15753847 G A HSPA13 Missense_Mutation p.L15F 0.33 tolerated(0.05) probably_damaging(0.997) TCGA-50-7109-01 21 45825814 45825814 G T TRPM2 Missense_Mutation p.G895V 0.24 deleterious(0) probably_damaging(0.928) TCGA-50-7109-01 21 46021441 46021441 G T KRTAP10-7 Missense_Mutation p.C307F 0.21 deleterious(0.01) unknown(0) TCGA-50-7109-01 21 46047942 46047942 C T KRTAP10-9 Missense_Mutation p.S285F 0.29 deleterious(0.01) possibly_damaging(0.788) TCGA-50-7109-01 22 39966877 39966877 G A CACNA1I Silent p.E40E 0.20 TCGA-50-7109-01 2 128262314 128262314 C A IWS1 Missense_Mutation p.V389L 0.37 tolerated(0.2) benign(0.046) TCGA-50-7109-01 2 133543054 133543054 T C NCKAP5 Missense_Mutation p.S444G 0.18 tolerated(0.4) benign(0.093) TCGA-50-7109-01 2 135892886 135892886 A T RAB3GAP1 Silent p.L517L 0.18 TCGA-50-7109-01 2 136570242 136570242 G C LCT Silent p.P664P 0.34 TCGA-50-7109-01 2 141457912 141457912 T C LRP1B Missense_Mutation p.K2236E 0.16 benign(0.003) TCGA-50-7109-01 2 15651350 15651350 C A NBAS Missense_Mutation p.D291Y 0.18 deleterious(0) possibly_damaging(0.759) TCGA-50-7109-01 2 162719564 162719564 A C SLC4A10 Missense_Mutation p.D253A 0.11 tolerated(0.18) possibly_damaging(0.859) TCGA-50-7109-01 2 166003311 166003311 A T SCN3A Missense_Mutation p.F537I 0.16 tolerated(0.08) possibly_damaging(0.729) TCGA-50-7109-01 2 166172258 166172258 C T SCN2A Missense_Mutation p.S554F 0.24 tolerated(0.07) possibly_damaging(0.776) TCGA-50-7109-01 2 166626801 166626801 T A GALNT3 Missense_Mutation p.E137V 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-50-7109-01 2 168101680 168101680 T A XIRP2 Missense_Mutation p.C1260S 0.16 benign(0) TCGA-50-7109-01 2 168102400 168102400 G A XIRP2 Missense_Mutation p.D1500N 0.38 probably_damaging(1) TCGA-50-7109-01 2 168106663 168106664 AC - XIRP2 Frame_Shift_Del p.Q2922Efs*15 0.13 TCGA-50-7109-01 2 171262076 171262076 G A MYO3B Missense_Mutation p.R818Q 0.31 deleterious(0.03) benign(0.174) TCGA-50-7109-01 2 179604234 179604234 T C TTN Missense_Mutation p.K4576E 0.18 TCGA-50-7109-01 2 187692746 187692746 C - ZSWIM2 Frame_Shift_Del p.E623Sfs*4 0.24 TCGA-50-7109-01 2 190656605 190656605 G A PMS1 Missense_Mutation p.V24I 0.24 deleterious(0) probably_damaging(0.986) TCGA-50-7109-01 2 200193550 200193550 C A SATB2 Missense_Mutation p.Q419H 0.19 tolerated(0.06) possibly_damaging(0.599) TCGA-50-7109-01 2 210560620 210560620 G C MAP2 Missense_Mutation p.Q1242H 0.10 deleterious_low_confidence(0.05) possibly_damaging(0.516) TCGA-50-7109-01 2 211504723 211504723 C A CPS1 Missense_Mutation p.H973N 0.15 tolerated(0.25) benign(0.019) TCGA-50-7109-01 2 217543575 217543575 G T IGFBP5 Missense_Mutation p.Q189K 0.35 tolerated(0.3) benign(0.007) TCGA-50-7109-01 2 219892675 219892675 G T CCDC108 Missense_Mutation p.F636L 0.20 deleterious(0.01) benign(0.036) TCGA-50-7109-01 2 220408109 220408109 G A CHPF Missense_Mutation p.P51L 0.17 tolerated(0.32) benign(0.022) TCGA-50-7109-01 2 240944656 240944656 G C NDUFA10 Missense_Mutation p.D287E 0.17 tolerated(0.06) possibly_damaging(0.517) TCGA-50-7109-01 2 27260556 27260556 G C TMEM214 Missense_Mutation p.E380Q 0.24 tolerated(0.26) possibly_damaging(0.868) TCGA-50-7109-01 2 37349800 37349800 C A EIF2AK2 Nonsense_Mutation p.E306* 0.14 TCGA-50-7109-01 2 40655869 40655869 G A SLC8A1 Missense_Mutation p.L518F 0.22 tolerated(0.47) benign(0.001) TCGA-50-7109-01 2 69575396 69575396 G A GFPT1 Missense_Mutation p.R306C 0.25 tolerated(0.05) possibly_damaging(0.608) TCGA-50-7109-01 2 80773180 80773180 C G CTNNA2 Missense_Mutation p.S511C 0.29 tolerated(0.07) benign(0.008) TCGA-50-7109-01 2 89309943 89309943 C A IGKV1-9 Missense_Mutation p.R4S 0.12 deleterious_low_confidence(0.05) benign(0.047) TCGA-50-7109-01 3 121209076 121209076 C A POLQ Missense_Mutation p.C901F 0.44 tolerated(0.08) benign(0.027) TCGA-50-7109-01 3 122928023 122928023 C G SEC22A 5'UTR 0.42 TCGA-50-7109-01 3 124746163 124746163 C A HEG1 Nonsense_Mutation p.E267* 0.41 TCGA-50-7109-01 3 129305058 129305058 C A PLXND1 Missense_Mutation p.G560C 0.33 deleterious(0.02) probably_damaging(0.972) TCGA-50-7109-01 3 130289965 130289965 C A COL6A6 Missense_Mutation p.A902D 0.18 tolerated(0.17) possibly_damaging(0.719) TCGA-50-7109-01 3 139093397 139093397 C T COPB2 Missense_Mutation p.A229T 0.10 tolerated(1) benign(0.158) TCGA-50-7109-01 3 140401880 140401880 C T TRIM42 Silent p.N306N 0.35 TCGA-50-7109-01 3 157031456 157031456 T A VEPH1 Missense_Mutation p.H655L 0.10 tolerated(0.09) possibly_damaging(0.611) TCGA-50-7109-01 3 196134252 196134252 C T UBXN7 Missense_Mutation p.S29N 0.11 tolerated(0.56) benign(0.004) TCGA-50-7109-01 3 37512507 37512507 G T ITGA9 Silent p.V65V 0.12 TCGA-50-7109-01 3 49394909 49394909 G A GPX1 Missense_Mutation p.P175L 0.21 deleterious(0.01) possibly_damaging(0.706) TCGA-50-7109-01 3 6903146 6903146 T A GRM7 Missense_Mutation p.L24H 0.31 deleterious(0.05) probably_damaging(0.926) TCGA-50-7109-01 3 78666888 78666888 C T ROBO1 Silent p.S1393S 0.09 TCGA-50-7109-01 3 93761947 93761947 A T ARL13B Missense_Mutation p.E296V 0.12 deleterious(0.01) benign(0.099) TCGA-50-7109-01 4 107845182 107845182 G T DKK2 Missense_Mutation p.L237M 0.20 deleterious(0) probably_damaging(0.994) TCGA-50-7109-01 4 115856477 115856477 T C NDST4 Missense_Mutation p.Q474R 0.16 deleterious(0.02) probably_damaging(0.982) TCGA-50-7109-01 4 123533846 123533846 C A IL21 3'UTR 0.33 TCGA-50-7109-01 4 123533847 123533847 C A IL21 3'UTR 0.33 TCGA-50-7109-01 4 147561134 147561134 C T POU4F2 Missense_Mutation p.P135L 0.19 deleterious_low_confidence(0.04) probably_damaging(0.981) TCGA-50-7109-01 4 155219858 155219858 C A DCHS2 Nonsense_Mutation p.G1415* 0.18 TCGA-50-7109-01 4 159091588 159091588 T A FAM198B Intron 0.27 TCGA-50-7109-01 4 178355600 178355600 C A AGA Missense_Mutation p.D248Y 0.10 deleterious(0) probably_damaging(1) TCGA-50-7109-01 4 26490886 26490886 G T CCKAR Missense_Mutation p.S111R 0.07 tolerated(0.1) possibly_damaging(0.699) TCGA-50-7109-01 4 39408945 39408945 G T KLB Missense_Mutation p.G126C 0.33 tolerated(0.05) possibly_damaging(0.684) TCGA-50-7109-01 4 48563563 48563563 G A FRYL Missense_Mutation p.L1263F 0.08 deleterious(0) possibly_damaging(0.635) TCGA-50-7109-01 4 56851486 56851486 G T CEP135 Nonsense_Mutation p.E607* 0.10 TCGA-50-7109-01 4 57194486 57194486 G A KIAA1211 3'UTR 0.13 TCGA-50-7109-01 5 120021716 120021716 A T PRR16 Missense_Mutation p.K53I 0.19 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-50-7109-01 5 131630391 131630391 A G SLC22A4 Missense_Mutation p.S28G 0.20 deleterious(0) benign(0.106) TCGA-50-7109-01 5 134785609 134785609 G T TIFAB Silent p.V7V 0.22 TCGA-50-7109-01 5 137627777 137627777 G T CDC25C Missense_Mutation p.P215Q 0.18 deleterious(0) possibly_damaging(0.866) TCGA-50-7109-01 5 14508568 14508568 C T TRIO 3'UTR 0.11 TCGA-50-7109-01 5 156671307 156671307 G T ITK Missense_Mutation p.G423V 0.20 deleterious(0) probably_damaging(0.999) TCGA-50-7109-01 5 160025868 160025868 G T ATP10B Missense_Mutation p.P1158H 0.29 deleterious(0) probably_damaging(1) TCGA-50-7109-01 5 161300189 161300189 A G GABRA1 Missense_Mutation p.M108V 0.14 tolerated(0.16) benign(0.001) TCGA-50-7109-01 5 167674702 167674702 G T TENM2 Missense_Mutation p.R2253L 0.30 deleterious(0) probably_damaging(0.999) TCGA-50-7109-01 5 178392679 178392679 C G ZNF454 Nonsense_Mutation p.S425* 0.24 TCGA-50-7109-01 5 180582665 180582665 C T OR2V2 Silent p.T241T 0.15 TCGA-50-7109-01 5 23524524 23524524 C T PRDM9 Silent p.C344C 0.44 TCGA-50-7109-01 5 33549399 33549399 G T ADAMTS12 Nonsense_Mutation p.C1405* 0.41 TCGA-50-7109-01 5 33964012 33964012 C A SLC45A2 Missense_Mutation p.L224F 0.40 tolerated(0.14) benign(0.292) TCGA-50-7109-01 5 41381978 41381978 G T PLCXD3 Missense_Mutation p.S254R 0.19 tolerated(0.4) benign(0.085) TCGA-50-7109-01 5 65349306 65349306 C G ERBB2IP Missense_Mutation p.F720L 0.13 tolerated_low_confidence(1) benign(0) TCGA-50-7109-01 5 71015107 71015107 C T CARTPT 5'UTR 0.15 TCGA-50-7109-01 5 71756824 71756824 G T ZNF366 Missense_Mutation p.T167N 0.22 tolerated_low_confidence(0.14) benign(0.008) TCGA-50-7109-01 6 26045648 26045648 A G HIST1H3C Missense_Mutation p.T4A 0.15 deleterious_low_confidence(0.01) benign(0) TCGA-50-7109-01 6 26055995 26055995 T C HIST1H1C 3'UTR 0.18 TCGA-50-7109-01 6 26107828 26107828 C T HIST1H1T Missense_Mutation p.R165K 0.09 tolerated(0.36) benign(0.001) TCGA-50-7109-01 6 27833185 27833185 G C HIST1H2AL Missense_Mutation p.R18P 0.16 deleterious_low_confidence(0) unknown(0) TCGA-50-7109-01 6 27879515 27879515 T G OR2B2 Missense_Mutation p.N195H 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-50-7109-01 6 47846204 47846204 C A PTCHD4 Silent p.G792G 0.08 TCGA-50-7109-01 6 55214912 55214912 C G GFRAL Missense_Mutation p.F113L 0.18 tolerated(1) benign(0.001) TCGA-50-7109-01 6 56457018 56457018 C T DST Missense_Mutation p.D1666N 0.50 possibly_damaging(0.686) TCGA-50-7109-01 6 56482783 56482783 C A DST Intron 0.17 TCGA-50-7109-01 6 7229815 7229815 G T RREB1 Missense_Mutation p.A495S 0.05 tolerated(0.9) benign(0.068) TCGA-50-7109-01 6 75848603 75848603 C T COL12A1 Missense_Mutation p.G1678R 0.33 probably_damaging(0.918) TCGA-50-7109-01 6 85453977 85453977 A C TBX18 Splice_Site p.X335_splice 0.78 TCGA-50-7109-01 7 100084640 100084640 G A NYAP1 Missense_Mutation p.G89S 0.33 deleterious(0) probably_damaging(0.999) TCGA-50-7109-01 7 107756519 107756519 G T LAMB4 Missense_Mutation p.T41K 0.13 tolerated(1) benign(0.003) TCGA-50-7109-01 7 143053838 143053838 C A FAM131B Silent p.L296L 0.12 TCGA-50-7109-01 7 143771460 143771460 C A OR2A25 Missense_Mutation p.L50M 0.09 tolerated(0.06) possibly_damaging(0.824) TCGA-50-7109-01 7 149462585 149462585 C A ZNF467 Missense_Mutation p.A336S 0.33 tolerated(0.21) benign(0.027) TCGA-50-7109-01 7 18788664 18788664 G T HDAC9 Missense_Mutation p.C649F 0.17 deleterious(0) probably_damaging(0.997) TCGA-50-7109-01 7 2740255 2740255 C T AMZ1 Missense_Mutation p.T57I 0.24 tolerated(0.05) benign(0.312) TCGA-50-7109-01 7 43484944 43484944 G A HECW1 Missense_Mutation p.A725T 0.17 tolerated_low_confidence(0.16) benign(0.294) TCGA-50-7109-01 7 47814686 47814686 T C PKD1L1 3'UTR 0.21 TCGA-50-7109-01 7 51261079 51261079 A G COBL Silent p.P151P 0.19 TCGA-50-7109-01 7 6731811 6731811 C T ZNF12 Silent p.S254S 0.36 TCGA-50-7109-01 7 81579728 81579728 T A CACNA2D1 Missense_Mutation p.S1086C 0.19 deleterious_low_confidence(0.01) benign(0.048) TCGA-50-7109-01 7 98460868 98460868 G A TMEM130 Missense_Mutation p.L81F 0.38 deleterious(0) probably_damaging(0.999) TCGA-50-7109-01 8 102570830 102570830 G T GRHL2 Silent p.T156T 0.50 TCGA-50-7109-01 8 110451174 110451174 C G PKHD1L1 Missense_Mutation p.T1270R 0.62 deleterious(0.05) benign(0.111) TCGA-50-7109-01 8 113275890 113275890 A C CSMD3 Missense_Mutation p.S3280R 0.14 tolerated(0.27) benign(0.082) TCGA-50-7109-01 8 121259915 121259915 C T COL14A1 Missense_Mutation p.T848M 0.30 deleterious(0) possibly_damaging(0.861) TCGA-50-7109-01 8 124975538 124975538 G - FER1L6 Frame_Shift_Del p.A33Hfs*38 0.11 TCGA-50-7109-01 8 16942779 16942779 G T MICU3 Missense_Mutation p.M243I 0.13 deleterious(0) possibly_damaging(0.895) TCGA-50-7109-01 8 24342843 24342843 G T ADAM7 Missense_Mutation p.C310F 0.45 deleterious(0) probably_damaging(1) TCGA-50-7109-01 8 2824155 2824155 C G CSMD1 Missense_Mutation p.G3013R 0.33 probably_damaging(0.998) TCGA-50-7109-01 8 30924680 30924680 T C WRN Silent p.Y212Y 0.09 TCGA-50-7109-01 8 42188628 42188628 A G IKBKB 3'UTR 0.33 TCGA-50-7109-01 8 59407086 59407086 G T CYP7A1 Missense_Mutation p.L340M 0.10 deleterious(0.01) probably_damaging(0.949) TCGA-50-7109-01 8 68423860 68423860 C A CPA6 Silent p.L116L 0.10 TCGA-50-7109-01 8 77618376 77618376 A T ZFHX4 Missense_Mutation p.R685W 0.07 possibly_damaging(0.827) TCGA-50-7109-01 8 92407366 92407366 C T SLC26A7 3'Flank 0.58 TCGA-50-7109-01 8 93026891 93026891 C A RUNX1T1 Missense_Mutation p.R139S 0.21 deleterious(0) possibly_damaging(0.467) TCGA-50-7109-01 9 100971119 100971119 C T TBC1D2 Missense_Mutation p.A661T 0.19 tolerated(0.78) benign(0.008) TCGA-50-7109-01 9 107602707 107602707 C T ABCA1 Missense_Mutation p.A303T 0.22 tolerated(0.11) possibly_damaging(0.647) TCGA-50-7109-01 9 114134778 114134778 C G KIAA0368 Missense_Mutation p.A1665P 0.18 tolerated(0.35) benign(0.009) TCGA-50-7109-01 9 114411817 114411817 G A DNAJC25 Missense_Mutation p.A192T 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-50-7109-01 9 125316283 125316283 C A OR1N2 Missense_Mutation p.P279T 0.25 deleterious(0) probably_damaging(0.999) TCGA-50-7109-01 9 125316284 125316284 C A OR1N2 Missense_Mutation p.P279H 0.26 deleterious(0) probably_damaging(1) TCGA-50-7109-01 9 125562914 125562914 T G OR1K1 Silent p.A171A 0.32 TCGA-50-7109-01 9 126125320 126125320 G A CRB2 Missense_Mutation p.G91S 0.16 tolerated(0.19) unknown(0) TCGA-50-7109-01 9 43709674 43709674 C A CNTNAP3B Missense_Mutation p.S37Y 0.25 deleterious(0) possibly_damaging(0.883) TCGA-50-7109-01 X 119249424 119249424 C A RHOXF1 Nonsense_Mutation p.E117* 0.67 TCGA-50-7109-01 X 135430302 135430302 A C GPR112 Silent p.T1479T 0.60 TCGA-50-7109-01 X 144904123 144904123 C A SLITRK2 Silent p.P60P 0.74 TCGA-50-7109-01 X 144906140 144906140 C A SLITRK2 Missense_Mutation p.P733T 0.57 tolerated(0.3) benign(0.004) TCGA-50-7109-01 X 155171642 155171642 G C VAMP7 Missense_Mutation p.D208H 0.15 unknown(0) TCGA-50-7109-01 X 30260330 30260330 G T MAGEB4 Missense_Mutation p.K26N 0.80 tolerated(0.34) benign(0.034) TCGA-50-7109-01 X 91873753 91873753 T A PCDH11X Silent p.A1286A 0.32 TCGA-50-8457-01 10 104139047 104139047 G C GBF1 Missense_Mutation p.D1500H 0.35 deleterious(0) probably_damaging(0.999) TCGA-50-8457-01 10 7285552 7285552 A T SFMBT2 Missense_Mutation p.L363H 0.28 deleterious(0.03) probably_damaging(1) TCGA-50-8457-01 11 134010583 134010583 G T JAM3 Silent p.S58S 0.08 TCGA-50-8457-01 12 125609313 125609313 C G AACS Missense_Mutation p.P395R 0.13 deleterious(0) probably_damaging(1) TCGA-50-8457-01 12 32908436 32908436 G A YARS2 Missense_Mutation p.R125C 0.19 deleterious(0) probably_damaging(0.996) TCGA-50-8457-01 12 41967695 41967695 G A PDZRN4 3'UTR 0.13 TCGA-50-8457-01 12 56030701 56030701 T C OR10P1 Missense_Mutation p.L9P 0.17 deleterious(0.01) possibly_damaging(0.472) TCGA-50-8457-01 12 6167109 6167109 C T VWF Silent p.R545R 0.19 TCGA-50-8457-01 13 113158474 113158474 G A TUBGCP3 Missense_Mutation p.L727F 0.11 deleterious(0) probably_damaging(0.985) TCGA-50-8457-01 13 61068582 61068582 G T TDRD3 Missense_Mutation p.G244V 0.25 deleterious(0.04) probably_damaging(0.991) TCGA-50-8457-01 14 106204054 106204054 G T IGHG1 3'UTR 0.56 TCGA-50-8457-01 14 32560308 32560308 G A ARHGAP5 Missense_Mutation p.E145K 0.29 deleterious(0) possibly_damaging(0.742) TCGA-50-8457-01 14 65560460 65560460 A G MAX Missense_Mutation p.L46S 0.43 deleterious(0) probably_damaging(1) TCGA-50-8457-01 14 77722939 77722939 C A TMEM63C Missense_Mutation p.T764N 0.32 tolerated(0.18) benign(0.211) TCGA-50-8457-01 15 43122183 43122183 T C TTBK2 Missense_Mutation p.I129V 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-50-8457-01 15 52244132 52244132 G A LEO1 Missense_Mutation p.S507L 0.05 tolerated(0.12) benign(0.363) TCGA-50-8457-01 16 26147182 26147182 G A HS3ST4 Nonsense_Mutation p.W328* 0.19 TCGA-50-8457-01 16 48204879 48204879 C A ABCC11 Splice_Site p.X1233_splice 0.33 TCGA-50-8457-01 16 71319052 71319054 CAC - CMTR2 Nonsense_Mutation p.C257_E258delins* 0.28 TCGA-50-8457-01 17 16285701 16285701 G T UBB Silent p.L160L 0.09 TCGA-50-8457-01 17 29663690 29663690 G C NF1 Missense_Mutation p.C2062S 0.22 tolerated(0.32) probably_damaging(0.942) TCGA-50-8457-01 17 62125218 62125218 C A ERN1 Missense_Mutation p.Q843H 0.24 deleterious(0) probably_damaging(0.991) TCGA-50-8457-01 17 7193656 7193661 GCCGTT - YBX2 In_Frame_Del p.Q218_R219del 0.26 TCGA-50-8457-01 17 78081599 78081599 C A GAA Missense_Mutation p.P287T 0.15 tolerated(0.12) benign(0.232) TCGA-50-8457-01 19 19757014 19757014 T C ATP13A1 Missense_Mutation p.K1083R 0.18 tolerated(0.82) benign(0.002) TCGA-50-8457-01 19 22379536 22379537 AC - ZNF676 5'UTR 0.17 TCGA-50-8457-01 19 23557448 23557448 G C ZNF91 Missense_Mutation p.A50G 0.20 deleterious(0) benign(0.424) TCGA-50-8457-01 19 36526358 36526358 C A THAP8 Missense_Mutation p.R270L 0.28 deleterious_low_confidence(0.01) benign(0.018) TCGA-50-8457-01 19 43382077 43382077 A T PSG1 Missense_Mutation p.F140I 0.07 deleterious(0.03) benign(0.014) TCGA-50-8457-01 19 56481921 56481921 G A NLRP8 Missense_Mutation p.C798Y 0.20 deleterious(0) probably_damaging(0.998) TCGA-50-8457-01 1 150915140 150915141 - C SETDB1 Frame_Shift_Ins p.L218Pfs*18 0.17 TCGA-50-8457-01 1 155014057 155014057 T C DCST1 Missense_Mutation p.M239T 0.08 tolerated(0.1) benign(0.003) TCGA-50-8457-01 1 176915104 176915104 G C ASTN1 Missense_Mutation p.S736C 0.10 deleterious(0) possibly_damaging(0.621) TCGA-50-8457-01 20 30227860 30227860 G A COX4I2 Silent p.K69K 0.14 TCGA-50-8457-01 20 50400995 50400995 G A SALL4 Nonsense_Mutation p.Q991* 0.23 TCGA-50-8457-01 20 62730082 62730082 G A OPRL1 Missense_Mutation p.R348H 0.13 deleterious(0.01) possibly_damaging(0.863) TCGA-50-8457-01 22 21344734 21344734 G T LZTR1 Silent p.R237R 0.12 TCGA-50-8457-01 22 26701995 26701995 C A SEZ6L Missense_Mutation p.P467T 0.09 deleterious(0) probably_damaging(1) TCGA-50-8457-01 22 43024265 43024265 G A CYB5R3 Missense_Mutation p.P152L 0.08 deleterious(0) probably_damaging(0.999) TCGA-50-8457-01 2 228163524 228163524 G A COL4A3 Missense_Mutation p.R1293H 0.37 unknown(0) TCGA-50-8457-01 3 111603771 111603771 C T PHLDB2 Nonsense_Mutation p.R283* 0.17 TCGA-50-8457-01 3 133547629 133547629 G A RAB6B 3'UTR 0.13 TCGA-50-8457-01 3 142281217 142281217 T A ATR Nonsense_Mutation p.K343* 0.31 TCGA-50-8457-01 3 46008428 46008428 G A FYCO1 Missense_Mutation p.R800W 0.31 deleterious(0.02) benign(0.001) TCGA-50-8457-01 3 53222866 53222866 G T PRKCD Missense_Mutation p.A516S 0.18 tolerated(0.06) probably_damaging(0.985) TCGA-50-8457-01 3 57131937 57131937 C G IL17RD Missense_Mutation p.E598D 0.12 tolerated_low_confidence(0.51) benign(0.003) TCGA-50-8457-01 4 123175476 123175476 A T KIAA1109 Nonsense_Mutation p.R2017* 0.15 TCGA-50-8457-01 4 184601385 184601386 - G TRAPPC11 Frame_Shift_Ins p.K361Efs*9 0.21 TCGA-50-8457-01 4 1993410 1993410 G A NELFA Silent p.L92L 0.05 TCGA-50-8457-01 4 79832926 79832926 T C BMP2K Silent p.H1075H 0.24 TCGA-50-8457-01 5 112164552 112164552 G T APC Splice_Site p.X543_splice 0.31 TCGA-50-8457-01 5 138714323 138714323 G T SLC23A1 Missense_Mutation p.T379K 0.50 deleterious(0) probably_damaging(0.928) TCGA-50-8457-01 5 167675227 167675227 G A TENM2 Missense_Mutation p.R2428H 0.21 deleterious(0) probably_damaging(0.941) TCGA-50-8457-01 5 80408498 80408498 G T RASGRF2 Silent p.V636V 0.26 TCGA-50-8457-01 6 132938685 132938685 A G TAAR2 Silent p.T220T 0.12 TCGA-50-8457-01 6 84629121 84629121 A G CYB5R4 Missense_Mutation p.D171G 0.27 deleterious(0) probably_damaging(1) TCGA-50-8457-01 7 73770820 73770820 C G CLIP2 Missense_Mutation p.P295R 0.13 deleterious(0) probably_damaging(1) TCGA-50-8457-01 8 144946468 144946468 G A EPPK1 Silent p.L318L 0.23 TCGA-50-8457-01 9 107367310 107367310 A T OR13C2 Missense_Mutation p.L200H 0.24 tolerated(0.09) probably_damaging(0.959) TCGA-50-8457-01 9 130502574 130502574 C T SH2D3C Silent p.K721K 0.15 TCGA-50-8457-01 9 131222921 131222921 G A ODF2 Intron 0.23 TCGA-50-8457-01 X 100603710 100603710 G T TIMM8A 5'UTR 0.14 TCGA-50-8457-01 X 102528946 102528946 C T TCEAL5 Silent p.R182R 0.13 TCGA-50-8457-01 X 102528960 102528960 G A TCEAL5 Missense_Mutation p.P178S 0.13 tolerated(0.1) benign(0.034) TCGA-50-8457-01 X 102528961 102528961 A T TCEAL5 Missense_Mutation p.D177E 0.12 deleterious(0.01) possibly_damaging(0.533) TCGA-50-8457-01 X 106846103 106846103 C T FRMPD3 Missense_Mutation p.P1645S 0.15 tolerated(0.05) possibly_damaging(0.503) TCGA-50-8457-01 X 153036423 153036423 C A PLXNB3 Missense_Mutation p.L737M 0.09 tolerated(0.11) possibly_damaging(0.605) TCGA-50-8457-01 X 54785035 54785035 C A ITIH6 Missense_Mutation p.W491L 0.30 tolerated(0.16) benign(0.218) TCGA-50-8457-01 X 55052359 55052359 C A ALAS2 Silent p.V25V 0.07 TCGA-50-8457-01 X 65480003 65480003 A T HEPH Missense_Mutation p.E1087V 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-50-8457-01 X 77245182 77245182 C G ATP7A Nonsense_Mutation p.S355* 0.03 TCGA-50-8457-01 X 77264753 77264753 C A ATP7A Missense_Mutation p.T621K 0.04 tolerated(0.07) benign(0.09) TCGA-50-8459-01 10 102734742 102734742 G A SEMA4G Intron 0.12 TCGA-50-8459-01 10 61958143 61958143 G A ANK3 Silent p.A548A 0.11 TCGA-50-8459-01 10 62631267 62631267 G C RHOBTB1 Missense_Mutation p.F688L 0.16 tolerated(0.13) probably_damaging(0.977) TCGA-50-8459-01 10 69699384 69699384 T C HERC4 Silent p.P852P 0.14 TCGA-50-8459-01 10 70514971 70514971 G T CCAR1 Intron 0.07 TCGA-50-8459-01 11 10328160 10328160 C A ADM Missense_Mutation p.P177Q 0.21 tolerated_low_confidence(0.34) unknown(0) TCGA-50-8459-01 11 110036074 110036074 G A ZC3H12C Missense_Mutation p.R755Q 0.08 deleterious(0.04) benign(0.063) TCGA-50-8459-01 11 18267008 18267008 C A SAA2 Silent p.L95L 0.10 TCGA-50-8459-01 11 43413036 43413036 A T TTC17 Silent p.T147T 0.11 TCGA-50-8459-01 11 55944216 55944216 G T OR5J2 Missense_Mutation p.R41S 0.18 deleterious(0.01) benign(0) TCGA-50-8459-01 11 5906276 5906276 T A OR52E4 Missense_Mutation p.F252I 0.14 deleterious(0) probably_damaging(0.999) TCGA-50-8459-01 11 59132397 59132397 G T OR5AN1 Missense_Mutation p.A156S 0.19 tolerated(1) benign(0.052) TCGA-50-8459-01 11 64504339 64504339 G C RASGRP2 Silent p.T327T 0.27 TCGA-50-8459-01 11 6459662 6459662 T G HPX Silent p.G138G 0.11 TCGA-50-8459-01 11 6519314 6519314 G T DNHD1 5'UTR 0.09 TCGA-50-8459-01 11 82693136 82693136 C A RAB30 3'UTR 0.16 TCGA-50-8459-01 11 89028402 89028402 C A TYR Silent p.A486A 0.14 TCGA-50-8459-01 11 89903267 89903267 C G NAALAD2 Missense_Mutation p.P458R 0.08 deleterious(0) probably_damaging(1) TCGA-50-8459-01 12 132490799 132490799 G T EP400 Silent p.A1026A 0.22 TCGA-50-8459-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.68 deleterious(0.04) probably_damaging(0.993) TCGA-50-8459-01 12 49425487 49425487 G T KMT2D Missense_Mutation p.A4334D 0.30 unknown(0) TCGA-50-8459-01 12 52282102 52282102 C A ANKRD33 Silent p.T44T 0.19 TCGA-50-8459-01 12 52282103 52282103 C A ANKRD33 Missense_Mutation p.L45I 0.17 tolerated_low_confidence(0.11) benign(0.001) TCGA-50-8459-01 12 56514687 56514687 G T ZC3H10 Missense_Mutation p.R114L 0.16 deleterious(0.05) benign(0.412) TCGA-50-8459-01 12 7051119 7051119 G T ATN1 3'UTR 0.50 TCGA-50-8459-01 12 71977982 71977982 T A LGR5 Nonsense_Mutation p.L731* 0.21 TCGA-50-8459-01 12 86199251 86199251 A T RASSF9 Missense_Mutation p.D179E 0.14 tolerated(0.61) benign(0.004) TCGA-50-8459-01 13 109792683 109792683 C T MYO16 Missense_Mutation p.R1353C 0.20 deleterious(0) probably_damaging(0.988) TCGA-50-8459-01 13 35731265 35731265 A G NBEA Missense_Mutation p.Y901C 0.24 tolerated(0.06) benign(0.179) TCGA-50-8459-01 13 39263807 39263807 C T FREM2 Nonsense_Mutation p.Q776* 0.09 TCGA-50-8459-01 13 58208799 58208799 C A PCDH17 Missense_Mutation p.P707T 0.07 deleterious(0.03) possibly_damaging(0.87) TCGA-50-8459-01 13 95117947 95117947 T C DCT Missense_Mutation p.D268G 0.11 tolerated(0.45) possibly_damaging(0.882) TCGA-50-8459-01 14 105414031 105414031 A G AHNAK2 Missense_Mutation p.L2586P 0.16 possibly_damaging(0.491) TCGA-50-8459-01 14 107179086 107179086 C - IGHV2-70 Frame_Shift_Del p.V31* 0.10 TCGA-50-8459-01 14 34394958 34394958 C T EGLN3 3'UTR 0.60 TCGA-50-8459-01 14 45605540 45605540 T C FANCM Silent p.A102A 0.11 TCGA-50-8459-01 14 96180418 96180418 G A TCL1A 5'UTR 0.07 TCGA-50-8459-01 15 23932083 23932083 G C NDN Silent p.A94A 0.11 TCGA-50-8459-01 15 25330615 25330615 C A SNORD116-18 RNA 0.08 TCGA-50-8459-01 15 29406210 29406210 G A APBA2 Silent p.S723S 0.10 TCGA-50-8459-01 15 50528327 50528327 A T SLC27A2 3'UTR 0.17 TCGA-50-8459-01 15 72642797 72642797 C A HEXA Intron 0.15 TCGA-50-8459-01 16 49430423 49430423 C G C16orf78 Missense_Mutation p.Q162E 0.12 deleterious(0.01) possibly_damaging(0.588) TCGA-50-8459-01 17 2276316 2276316 G A SGSM2 Missense_Mutation p.V620I 0.24 deleterious(0) benign(0.22) TCGA-50-8459-01 17 263809 263809 A T C17orf97 Missense_Mutation p.Q392L 0.16 tolerated(0.17) benign(0.011) TCGA-50-8459-01 17 37898639 37898639 C T GRB7 Missense_Mutation p.R52W 0.20 tolerated(0.19) unknown(0) TCGA-50-8459-01 17 57851156 57851156 G T VMP1 Missense_Mutation p.M208I 0.18 deleterious(0) possibly_damaging(0.828) TCGA-50-8459-01 17 62024444 62024444 C A SCN4A Silent p.L1134L 0.10 TCGA-50-8459-01 18 13884723 13884723 G T MC2R Silent p.I265I 0.19 TCGA-50-8459-01 18 22806021 22806021 G A ZNF521 Nonsense_Mutation p.Q621* 0.12 TCGA-50-8459-01 19 37209995 37209995 C A ZNF567 Missense_Mutation p.N92K 0.13 tolerated(0.24) benign(0.001) TCGA-50-8459-01 19 41381585 41381585 G A CYP2A7 3'UTR 0.06 TCGA-50-8459-01 19 54721312 54721312 G A LILRB3 Missense_Mutation p.T543M 0.05 tolerated(0.12) possibly_damaging(0.796) TCGA-50-8459-01 19 55221625 55221625 C T AC098784.2 3'Flank 0.12 TCGA-50-8459-01 19 57326825 57326825 C A PEG3 Missense_Mutation p.K995N 0.10 tolerated(0.12) possibly_damaging(0.71) TCGA-50-8459-01 19 9325369 9325369 C T OR7D4 Missense_Mutation p.V49I 0.16 tolerated(0.84) benign(0.005) TCGA-50-8459-01 1 120462955 120462955 C A NOTCH2 Missense_Mutation p.Q1792H 0.16 tolerated(0.18) probably_damaging(0.997) TCGA-50-8459-01 1 146465924 146465924 G A NBPF12 Missense_Mutation p.D3267N 0.07 possibly_damaging(0.56) TCGA-50-8459-01 1 154542285 154542285 C T CHRNB2 Silent p.I76I 0.10 TCGA-50-8459-01 1 156899136 156899136 G A LRRC71 Missense_Mutation p.S354N 0.21 tolerated(0.07) benign(0.025) TCGA-50-8459-01 1 197390744 197390744 C A CRB1 Missense_Mutation p.P596T 0.19 tolerated(0.23) benign(0.053) TCGA-50-8459-01 1 197390745 197390745 C A CRB1 Missense_Mutation p.P596H 0.19 deleterious(0.02) probably_damaging(0.923) TCGA-50-8459-01 1 247013113 247013113 T A AHCTF1 Silent p.S2074S 0.11 TCGA-50-8459-01 1 247695193 247695193 A T OR2C3 Missense_Mutation p.F207L 0.09 tolerated(0.09) benign(0.167) TCGA-50-8459-01 1 33764664 33764664 G T ZNF362 3'UTR 0.13 TCGA-50-8459-01 1 64102006 64102006 G T PGM1 Missense_Mutation p.Q343H 0.05 tolerated(0.18) benign(0.001) TCGA-50-8459-01 21 43321743 43321743 T A C2CD2 Silent p.S516S 0.09 TCGA-50-8459-01 22 22730631 22730631 C A IGLV5-45 Silent p.T42T 0.09 TCGA-50-8459-01 22 46654627 46654627 C T PKDREJ Silent p.P1531P 0.16 TCGA-50-8459-01 2 11053814 11053814 C - KCNF1 Frame_Shift_Del p.A422Rfs*8 0.17 TCGA-50-8459-01 2 1480944 1480944 C G TPO Silent p.G302G 0.22 TCGA-50-8459-01 2 168105687 168105687 G T XIRP2 Missense_Mutation p.E2595D 0.09 benign(0.009) TCGA-50-8459-01 2 168105688 168105688 G T XIRP2 Missense_Mutation p.V2596F 0.09 benign(0.006) TCGA-50-8459-01 2 212293135 212293135 T C ERBB4 Missense_Mutation p.Y906C 0.14 deleterious(0) probably_damaging(0.975) TCGA-50-8459-01 2 233398954 233398954 G A CHRND Missense_Mutation p.E425K 0.13 tolerated(0.87) benign(0.021) TCGA-50-8459-01 2 27315292 27315292 C T KHK Missense_Mutation p.S62L 0.12 deleterious(0.01) probably_damaging(0.981) TCGA-50-8459-01 2 50464012 50464012 A G NRXN1 Missense_Mutation p.I1194T 0.14 deleterious(0) possibly_damaging(0.822) TCGA-50-8459-01 2 79385471 79385471 C A REG3A Missense_Mutation p.G105V 0.11 deleterious(0) probably_damaging(1) TCGA-50-8459-01 3 14862826 14862826 C A FGD5 Silent p.R750R 0.15 TCGA-50-8459-01 3 164741476 164741476 C A SI Missense_Mutation p.G994V 0.10 deleterious(0.01) probably_damaging(0.985) TCGA-50-8459-01 3 186507965 186507966 - CAGA RFC4 Nonsense_Mutation p.D321Vfs*2 0.11 TCGA-50-8459-01 3 186947563 186947563 C T MASP1 3'Flank 0.14 TCGA-50-8459-01 3 194117578 194117578 C T GP5 Silent p.P478P 0.14 TCGA-50-8459-01 4 110895916 110895916 G C EGF Missense_Mutation p.K594N 0.19 tolerated(0.14) benign(0.049) TCGA-50-8459-01 4 118006146 118006147 - A TRAM1L1 Frame_Shift_Ins p.W135Lfs*9 0.10 TCGA-50-8459-01 4 164272773 164272773 C G NPY5R 3'UTR 0.11 TCGA-50-8459-01 4 2172480 2172480 G A POLN Silent p.L494L 0.13 TCGA-50-8459-01 4 619638 619638 G T PDE6B Missense_Mutation p.V75L 0.21 tolerated(0.98) probably_damaging(0.999) TCGA-50-8459-01 4 8046912 8046912 C A ABLIM2 Silent p.G293G 0.06 TCGA-50-8459-01 5 100191888 100191888 C A ST8SIA4 Missense_Mutation p.W239L 0.16 benign(0.201) TCGA-50-8459-01 5 128448848 128448848 G T ISOC1 3'UTR 0.33 TCGA-50-8459-01 5 134191112 134191112 T G C5orf24 Missense_Mutation p.H174Q 0.08 tolerated_low_confidence(0.22) probably_damaging(0.986) TCGA-50-8459-01 5 139062521 139062521 C T CXXC5 3'UTR 0.15 TCGA-50-8459-01 5 140182665 140182665 C T PCDHA3 Missense_Mutation p.T628M 0.10 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-50-8459-01 5 140209603 140209603 C T PCDHA6 Missense_Mutation p.P643S 0.07 tolerated_low_confidence(0.12) benign(0.066) TCGA-50-8459-01 5 140580845 140580845 C A PCDHB11 Missense_Mutation p.L500I 0.13 deleterious_low_confidence(0.03) probably_damaging(0.94) TCGA-50-8459-01 5 148689530 148689530 C A AFAP1L1 Missense_Mutation p.S253R 0.11 deleterious(0) probably_damaging(0.97) TCGA-50-8459-01 5 39202550 39202550 G T FYB Silent p.P181P 0.11 TCGA-50-8459-01 5 39331798 39331798 C A C9 Missense_Mutation p.V199L 0.14 tolerated(0.06) benign(0.173) TCGA-50-8459-01 5 75907006 75907006 G T IQGAP2 Nonsense_Mutation p.G507* 0.10 TCGA-50-8459-01 6 110757116 110757116 T C SLC22A16 Missense_Mutation p.I454V 0.13 tolerated(0.15) benign(0.136) TCGA-50-8459-01 6 126080327 126080327 A G HEY2 Silent p.T131T 0.14 TCGA-50-8459-01 6 129498900 129498900 C A LAMA2 Missense_Mutation p.S452R 0.12 tolerated(0.55) benign(0.004) TCGA-50-8459-01 6 131900276 131900276 C A ARG1 Missense_Mutation p.D60E 0.17 deleterious(0.03) benign(0.021) TCGA-50-8459-01 6 30622597 30622597 T C DHX16 Silent p.T961T 0.15 TCGA-50-8459-01 6 55304318 55304318 C T HMGCLL1 Missense_Mutation p.G309S 0.14 deleterious(0) probably_damaging(0.995) TCGA-50-8459-01 6 70071185 70071185 A G BAI3 Silent p.L1340L 0.11 TCGA-50-8459-01 6 84563854 84563854 G T RIPPLY2 Missense_Mutation p.K71N 0.12 deleterious(0) probably_damaging(1) TCGA-50-8459-01 7 100417234 100417234 G - EPHB4 Frame_Shift_Del p.L415* 0.09 TCGA-50-8459-01 7 12270709 12270709 C T TMEM106B Silent p.S218S 0.15 TCGA-50-8459-01 7 150878440 150878440 C A ASB10 Silent p.L230L 0.13 TCGA-50-8459-01 7 21779290 21779290 A C DNAH11 Missense_Mutation p.Q2645P 0.10 probably_damaging(0.96) TCGA-50-8459-01 7 44266159 44266159 G T CAMK2B Missense_Mutation p.P518Q 0.38 tolerated_low_confidence(0.34) possibly_damaging(0.884) TCGA-50-8459-01 7 92131237 92131237 G A PEX1 Nonsense_Mutation p.R795* 0.13 TCGA-50-8459-01 8 2800109 2800109 G T CSMD1 Missense_Mutation p.Q3474K 0.31 benign(0.012) TCGA-50-8459-01 8 53079547 53079547 C G ST18 Splice_Site p.X357_splice 0.13 TCGA-50-8459-01 8 77763939 77763939 G T ZFHX4 Missense_Mutation p.K1594N 0.17 possibly_damaging(0.607) TCGA-50-8459-01 8 89053965 89053965 C G MMP16 Missense_Mutation p.K516N 0.14 deleterious(0.05) benign(0.191) TCGA-50-8459-01 9 107267415 107267415 G T OR13F1 Missense_Mutation p.S291I 0.13 deleterious(0) probably_damaging(0.998) TCGA-50-8459-01 9 43625370 43625370 C T SPATA31A6 Missense_Mutation p.S1106N 0.17 deleterious(0.03) possibly_damaging(0.763) TCGA-50-8459-01 9 8460526 8460526 C G PTPRD Missense_Mutation p.D1254H 0.20 tolerated(0.09) possibly_damaging(0.897) TCGA-50-8459-01 X 134856854 134856854 G A CT45A1 3'UTR 0.04 TCGA-50-8459-01 X 16875781 16875781 T C RBBP7 Missense_Mutation p.E222G 0.27 deleterious(0.01) probably_damaging(0.986) TCGA-50-8459-01 X 51644715 51644715 G T MAGED1 Missense_Mutation p.A732S 0.29 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-50-8460-01 10 102738240 102738240 T C MRPL43 3'Flank 0.11 TCGA-50-8460-01 11 18451373 18451373 C T LDHC Missense_Mutation p.R112C 0.20 tolerated(0.06) probably_damaging(0.98) TCGA-50-8460-01 11 60705416 60705416 C T SLC15A3 Missense_Mutation p.G506D 0.09 deleterious(0) probably_damaging(1) TCGA-50-8460-01 12 103695974 103695974 G A C12orf42 Missense_Mutation p.S332F 0.18 deleterious(0.03) probably_damaging(0.943) TCGA-50-8460-01 12 104732926 104732926 G A TXNRD1 Missense_Mutation p.V586M 0.09 deleterious(0) probably_damaging(0.969) TCGA-50-8460-01 12 27876980 27876980 A G MRPS35 Missense_Mutation p.D128G 0.26 tolerated(0.08) benign(0.007) TCGA-50-8460-01 12 42711192 42711193 - CTTAGCTG ZCRB1 Frame_Shift_Ins p.F95Qfs*25 0.16 TCGA-50-8460-01 12 49412616 49412616 C T PRKAG1 5'Flank 0.39 TCGA-50-8460-01 13 32911425 32911425 A G BRCA2 Missense_Mutation p.N978S 0.28 tolerated(0.23) benign(0.085) TCGA-50-8460-01 14 47120736 47120736 G C RPL10L Silent p.A68A 0.18 TCGA-50-8460-01 14 96157084 96157084 C A TCL1B Missense_Mutation p.S58R 0.17 deleterious(0.01) possibly_damaging(0.835) TCGA-50-8460-01 16 55562497 55562497 C T LPCAT2 Silent p.L174L 0.12 TCGA-50-8460-01 17 34050737 34050737 C T AP2B1 3'UTR 0.25 TCGA-50-8460-01 17 36714610 36714610 A C SRCIN1 Missense_Mutation p.L685R 0.15 deleterious(0) probably_damaging(0.951) TCGA-50-8460-01 17 72785005 72785005 T G TMEM104 Missense_Mutation p.L82R 0.10 tolerated(0.39) benign(0) TCGA-50-8460-01 17 7529731 7529731 G A SAT2 3'UTR 0.21 TCGA-50-8460-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.10 deleterious(0) probably_damaging(0.997) TCGA-50-8460-01 18 58039542 58039542 T G MC4R Missense_Mutation p.H14P 0.17 tolerated(0.28) benign(0.188) TCGA-50-8460-01 18 9257502 9257502 G A ANKRD12 Missense_Mutation p.V1413M 0.16 tolerated_low_confidence(0.09) benign(0.153) TCGA-50-8460-01 19 16060211 16060211 C T OR10H4 Missense_Mutation p.R132C 0.20 deleterious(0.04) benign(0.008) TCGA-50-8460-01 19 3612010 3612010 A T CACTIN Missense_Mutation p.Y730N 0.17 deleterious(0.01) probably_damaging(0.98) TCGA-50-8460-01 1 192129548 192129548 G C RGS18 Missense_Mutation p.D88H 0.30 deleterious(0) possibly_damaging(0.899) TCGA-50-8460-01 1 201751835 201751835 A G NAV1 Missense_Mutation p.N732S 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-50-8460-01 1 236918388 236918388 G A ACTN2 Missense_Mutation p.E682K 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-50-8460-01 20 31023948 31023948 G T ASXL1 Missense_Mutation p.G1145C 0.19 tolerated(0.16) benign(0.025) TCGA-50-8460-01 21 44524456 44524456 G A U2AF1 Missense_Mutation p.S34F 0.13 deleterious(0) possibly_damaging(0.835) TCGA-50-8460-01 21 45161605 45161605 A C PDXK Missense_Mutation p.E67A 0.18 tolerated(0.07) benign(0.073) TCGA-50-8460-01 2 89442331 89442331 G A IGKV3-20 Missense_Mutation p.T25M 0.15 deleterious(0.01) possibly_damaging(0.548) TCGA-50-8460-01 3 115395145 115395145 G T GAP43 Nonsense_Mutation p.E142* 0.11 TCGA-50-8460-01 3 147128442 147128442 G T ZIC1 Silent p.V181V 0.14 TCGA-50-8460-01 4 109858996 109858996 C A COL25A1 Nonsense_Mutation p.E226* 0.13 TCGA-50-8460-01 4 122789155 122789155 C T BBS7 Missense_Mutation p.R28K 0.15 tolerated(1) benign(0) TCGA-50-8460-01 4 8079365 8079365 C T ABLIM2 Missense_Mutation p.R222H 0.29 tolerated(0.26) benign(0.001) TCGA-50-8460-01 5 140208932 140208932 C T PCDHA6 Missense_Mutation p.S419L 0.22 deleterious_low_confidence(0.01) probably_damaging(0.914) TCGA-50-8460-01 6 3111056 3111056 C T RIPK1 Silent p.T532T 0.19 TCGA-50-8460-01 7 102584658 102584658 C A LRRC17 Silent p.A310A 0.09 TCGA-50-8460-01 7 813764 813764 G A HEATR2 Missense_Mutation p.A671T 0.15 tolerated(0.05) benign(0.426) TCGA-50-8460-01 9 125486803 125512657 9:125486803-125512657 - OR1L4 large deletion 0.13 TCGA-50-8460-01 9 125512657 125512658 - TTT OR1L6 In_Frame_Ins p.F179dup 0.16 TCGA-53-7624-01 10 102733330 102733330 G T SEMA4G Missense_Mutation p.M100I 0.41 tolerated(0.06) benign(0.117) TCGA-53-7624-01 10 105350166 105350166 C A NEURL1 3'UTR 0.31 TCGA-53-7624-01 10 108337228 108337228 G T SORCS1 Intron 0.36 TCGA-53-7624-01 10 111876108 111876108 C T ADD3 Silent p.A142A 0.37 TCGA-53-7624-01 10 116203885 116203885 T A ABLIM1 Silent p.S612S 0.43 TCGA-53-7624-01 10 120354232 120354232 G T PRLHR Silent p.L175L 0.50 TCGA-53-7624-01 10 124036349 124036349 G T BTBD16 Missense_Mutation p.R21L 0.26 deleterious(0) probably_damaging(1) TCGA-53-7624-01 10 124358301 124358301 A T DMBT1 Missense_Mutation p.S990C 0.37 tolerated(0.21) probably_damaging(0.922) TCGA-53-7624-01 10 124458873 124458873 G A C10orf120 Missense_Mutation p.P78S 0.20 deleterious(0.05) probably_damaging(1) TCGA-53-7624-01 10 124459151 124459151 C G C10orf120 Silent p.L52L 0.44 TCGA-53-7624-01 10 127462433 127462433 C A MMP21 Missense_Mutation p.A222S 0.44 tolerated(0.77) benign(0.019) TCGA-53-7624-01 10 129350764 129350764 G T NPS Missense_Mutation p.S44I 0.33 tolerated(0.06) benign(0.11) TCGA-53-7624-01 10 131964859 131964859 G T GLRX3 Missense_Mutation p.Q189H 0.40 deleterious(0) probably_damaging(0.99) TCGA-53-7624-01 10 134014387 134014387 C A DPYSL4 Missense_Mutation p.T337N 0.50 tolerated(0.79) possibly_damaging(0.673) TCGA-53-7624-01 10 135438974 135438974 T A FRG2B Missense_Mutation p.S156C 0.05 deleterious(0.03) probably_damaging(0.95) TCGA-53-7624-01 10 18242408 18242408 T C SLC39A12 Missense_Mutation p.L68S 0.64 deleterious(0) possibly_damaging(0.866) TCGA-53-7624-01 10 18885168 18885168 G T NSUN6 Missense_Mutation p.T249K 0.70 deleterious(0) probably_damaging(0.981) TCGA-53-7624-01 10 21074742 21074742 G A NEBL Silent p.Y993Y 0.34 TCGA-53-7624-01 10 24873742 24873742 C A ARHGAP21 Missense_Mutation p.G1826W 0.20 deleterious(0.02) possibly_damaging(0.894) TCGA-53-7624-01 10 35928568 35928568 C T FZD8 Missense_Mutation p.G597D 0.17 deleterious(0) probably_damaging(0.996) TCGA-53-7624-01 10 3822386 3822386 C G KLF6 Missense_Mutation p.E238Q 0.59 deleterious(0.01) benign(0.252) TCGA-53-7624-01 10 43294027 43294027 G T BMS1 Missense_Mutation p.C734F 0.38 tolerated(0.14) possibly_damaging(0.577) TCGA-53-7624-01 10 48389275 48389275 G T RBP3 Missense_Mutation p.R535S 0.36 deleterious(0) possibly_damaging(0.683) TCGA-53-7624-01 10 49440268 49440268 T A FRMPD2 Missense_Mutation p.H353L 0.34 deleterious(0.02) benign(0.012) TCGA-53-7624-01 10 50532601 50532601 G T C10orf71 Missense_Mutation p.G671W 0.36 deleterious(0) probably_damaging(0.979) TCGA-53-7624-01 10 51768803 51768803 C T AGAP6 Silent p.T306T 0.35 TCGA-53-7624-01 10 52913063 52913063 G T PRKG1 Missense_Mutation p.V151L 0.43 tolerated(0.67) benign(0.118) TCGA-53-7624-01 10 58119606 58119606 C G ZWINT Missense_Mutation p.A89P 0.47 deleterious(0.01) probably_damaging(0.996) TCGA-53-7624-01 10 64136310 64136310 G A ZNF365 Missense_Mutation p.E120K 0.13 deleterious_low_confidence(0.04) probably_damaging(0.958) TCGA-53-7624-01 10 70513758 70513758 A T CCAR1 Missense_Mutation p.H423L 0.42 deleterious(0.01) benign(0.264) TCGA-53-7624-01 10 73956649 73956649 G C ASCC1 Missense_Mutation p.L165V 0.39 tolerated(0.09) possibly_damaging(0.557) TCGA-53-7624-01 10 81697779 81697779 C T SFTPD Silent p.K319K 0.30 TCGA-53-7624-01 10 87675959 87675959 C A GRID1 Missense_Mutation p.W255L 0.24 deleterious(0.01) possibly_damaging(0.671) TCGA-53-7624-01 10 88703595 88703595 G T MMRN2 Missense_Mutation p.H316N 0.49 deleterious(0.02) benign(0.048) TCGA-53-7624-01 10 88717388 88717388 G A MMRN2 5'UTR 0.21 TCGA-53-7624-01 10 90966706 90966706 G T CH25H Missense_Mutation p.P115H 0.24 deleterious(0.01) possibly_damaging(0.907) TCGA-53-7624-01 10 92660420 92660420 C T RPP30 Missense_Mutation p.A264V 0.39 deleterious_low_confidence(0.04) benign(0.395) TCGA-53-7624-01 10 95394661 95394661 C A PDE6C Silent p.T422T 0.45 TCGA-53-7624-01 10 95405728 95405728 C A PDE6C Missense_Mutation p.P620Q 0.42 deleterious(0) probably_damaging(0.918) TCGA-53-7624-01 10 95557313 95557313 C G LGI1 Missense_Mutation p.S476C 0.37 deleterious(0) probably_damaging(1) TCGA-53-7624-01 10 95931022 95931022 G T PLCE1 Missense_Mutation p.Q526H 0.47 tolerated(0.11) possibly_damaging(0.602) TCGA-53-7624-01 10 96701754 96701754 C T CYP2C9 Missense_Mutation p.A103V 0.49 tolerated(0.56) benign(0.001) TCGA-53-7624-01 10 98084037 98084037 A T DNTT Silent p.V255V 0.44 TCGA-53-7624-01 10 98741671 98741671 A C C10orf12 Missense_Mutation p.E175A 0.34 deleterious(0) probably_damaging(0.999) TCGA-53-7624-01 10 99019332 99019332 G A ARHGAP19 Missense_Mutation p.R223W 0.31 deleterious(0) probably_damaging(0.993) TCGA-53-7624-01 10 99215370 99215370 C G ZDHHC16 Intron 0.34 TCGA-53-7624-01 11 102991711 102991711 G T DYNC2H1 Nonsense_Mutation p.E436* 0.51 TCGA-53-7624-01 11 103797707 103797707 C T PDGFD Missense_Mutation p.G307D 0.39 deleterious(0) probably_damaging(1) TCGA-53-7624-01 11 104817917 104817917 T A CASP4 Missense_Mutation p.N310Y 0.41 deleterious(0) possibly_damaging(0.815) TCGA-53-7624-01 11 10598095 10598095 T A MRVI1 Missense_Mutation p.L841F 0.66 tolerated(0.07) probably_damaging(0.988) TCGA-53-7624-01 11 106810871 106810871 C G GUCY1A2 Missense_Mutation p.G174A 0.44 deleterious(0.02) probably_damaging(0.997) TCGA-53-7624-01 11 107260852 107260852 T A CWF19L2 Missense_Mutation p.K607M 0.40 deleterious(0.03) probably_damaging(0.984) TCGA-53-7624-01 11 108122644 108122644 T C ATM Missense_Mutation p.M563T 0.38 tolerated(0.39) benign(0.001) TCGA-53-7624-01 11 113076388 113076388 G T NCAM1 Missense_Mutation p.V223F 0.37 deleterious(0.04) possibly_damaging(0.896) TCGA-53-7624-01 11 113103017 113103017 C A NCAM1 Missense_Mutation p.P505T 0.44 deleterious(0) benign(0.097) TCGA-53-7624-01 11 1162305 1162305 C T MUC5AC Missense_Mutation p.A605V 0.64 tolerated(0.07) benign(0.041) TCGA-53-7624-01 11 118307520 118307520 C T KMT2A Missense_Mutation p.S98L 0.28 unknown(0) TCGA-53-7624-01 11 118390389 118390389 G C KMT2A Missense_Mutation p.E3735Q 0.36 probably_damaging(0.998) TCGA-53-7624-01 11 118390685 118390685 G C KMT2A Missense_Mutation p.D3779H 0.26 probably_damaging(0.962) TCGA-53-7624-01 11 119983128 119983128 G T TRIM29 Silent p.A587A 0.46 TCGA-53-7624-01 11 120312488 120312488 T C ARHGEF12 Silent p.L389L 0.43 TCGA-53-7624-01 11 120957514 120957514 G T TBCEL Silent p.G328G 0.40 TCGA-53-7624-01 11 121023652 121023652 G T TECTA Missense_Mutation p.A1390S 0.39 tolerated(0.08) probably_damaging(0.992) TCGA-53-7624-01 11 122930693 122930693 C T HSPA8 Missense_Mutation p.G203D 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-53-7624-01 11 123810822 123810822 C T OR4D5 Missense_Mutation p.P167S 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-53-7624-01 11 126079500 126079500 C A RPUSD4 Missense_Mutation p.G158V 0.26 deleterious(0) probably_damaging(1) TCGA-53-7624-01 11 126201304 126201304 A G DCPS Silent p.V127V 0.20 TCGA-53-7624-01 11 126201331 126201331 A T DCPS Silent p.T136T 0.22 TCGA-53-7624-01 11 128781191 128781191 C - KCNJ5 Frame_Shift_Del p.M9* 0.28 TCGA-53-7624-01 11 1311491 1311491 C T TOLLIP Missense_Mutation p.G111D 0.38 deleterious(0) probably_damaging(0.986) TCGA-53-7624-01 11 134028316 134028316 C A NCAPD3 Missense_Mutation p.Q1314H 0.32 tolerated(0.14) benign(0.005) TCGA-53-7624-01 11 14825594 14825594 C G PDE3B Missense_Mutation p.A507G 0.62 tolerated(0.05) benign(0.317) TCGA-53-7624-01 11 18750431 18750431 C A PTPN5 3'UTR 0.52 TCGA-53-7624-01 11 22248963 22248963 G A ANO5 Missense_Mutation p.R160H 0.60 tolerated(0.12) possibly_damaging(0.518) TCGA-53-7624-01 11 2434787 2434787 A G TRPM5 Missense_Mutation p.M641T 0.50 deleterious(0) possibly_damaging(0.853) TCGA-53-7624-01 11 26725153 26725153 C A SLC5A12 Missense_Mutation p.W249L 0.07 deleterious(0) probably_damaging(1) TCGA-53-7624-01 11 3111858 3111858 C G OSBPL5 Missense_Mutation p.E776D 0.41 tolerated(0.22) benign(0.033) TCGA-53-7624-01 11 33604900 33604900 G T KIAA1549L Silent p.P1176P 0.69 TCGA-53-7624-01 11 35747673 35747673 C G TRIM44 Missense_Mutation p.L317V 0.65 deleterious(0) unknown(0) TCGA-53-7624-01 11 36597072 36597072 G T RAG1 Missense_Mutation p.A740S 0.66 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-53-7624-01 11 376074 376074 G T B4GALNT4 Missense_Mutation p.V366L 0.61 deleterious(0.04) benign(0.346) TCGA-53-7624-01 11 4608444 4608444 C A OR52I2 Silent p.V134V 0.54 TCGA-53-7624-01 11 4608445 4608445 C A OR52I2 Missense_Mutation p.H135N 0.55 deleterious(0.01) probably_damaging(1) TCGA-53-7624-01 11 4626536 4626536 T A TRIM68 Missense_Mutation p.R67W 0.66 deleterious(0.03) possibly_damaging(0.447) TCGA-53-7624-01 11 4661787 4661787 C A OR51D1 Missense_Mutation p.S256Y 0.65 deleterious(0) probably_damaging(0.996) TCGA-53-7624-01 11 4703827 4703827 A T OR51E2 Missense_Mutation p.F39I 0.66 deleterious(0.03) benign(0.005) TCGA-53-7624-01 11 47765513 47765513 C G FNBP4 Missense_Mutation p.G483A 0.38 tolerated(0.24) possibly_damaging(0.805) TCGA-53-7624-01 11 47767896 47767896 T C FNBP4 Silent p.K319K 0.69 TCGA-53-7624-01 11 48510988 48510988 C G OR4A47 Missense_Mutation p.S215C 0.75 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-53-7624-01 11 5080735 5080735 G A OR52E2 Silent p.L41L 0.78 TCGA-53-7624-01 11 5153664 5153664 G C OR52A5 Missense_Mutation p.A70G 0.58 deleterious(0.05) benign(0.043) TCGA-53-7624-01 11 5221843 5221843 C T OR51V1 Missense_Mutation p.E30K 0.34 deleterious(0) possibly_damaging(0.589) TCGA-53-7624-01 11 5246903 5246903 G A HBB Silent p.F123F 0.69 TCGA-53-7624-01 11 5411034 5411034 G T OR51M1 Missense_Mutation p.V136L 0.36 deleterious(0.03) benign(0.025) TCGA-53-7624-01 11 55861052 55861052 G A OR8I2 Missense_Mutation p.R90K 0.37 tolerated(1) benign(0) TCGA-53-7624-01 11 55861085 55861085 T A OR8I2 Missense_Mutation p.M101K 0.29 deleterious(0) benign(0.152) TCGA-53-7624-01 11 55944180 55944180 G T OR5J2 Silent p.V29V 0.34 TCGA-53-7624-01 11 55944522 55944522 G A OR5J2 Silent p.E143E 0.46 TCGA-53-7624-01 11 56043758 56043758 T C OR5T1 Missense_Mutation p.V215A 0.35 tolerated(0.52) benign(0.013) TCGA-53-7624-01 11 56058348 56058348 G A OR8H1 Missense_Mutation p.T64I 0.36 deleterious(0.05) benign(0.001) TCGA-53-7624-01 11 56309949 56309949 G A OR5M11 Missense_Mutation p.P262L 0.38 deleterious(0.02) benign(0.068) TCGA-53-7624-01 11 5776788 5776788 C G OR52N4 Missense_Mutation p.P273R 0.05 tolerated(0.67) possibly_damaging(0.649) TCGA-53-7624-01 11 57798799 57798799 T A OR6Q1 Missense_Mutation p.D125E 0.31 deleterious(0) probably_damaging(0.978) TCGA-53-7624-01 11 5799723 5799723 C A OR52N5 Missense_Mutation p.V48L 0.27 tolerated(1) benign(0.005) TCGA-53-7624-01 11 5799748 5799748 G A OR52N5 Silent p.L39L 0.29 TCGA-53-7624-01 11 59211322 59211322 G T OR5A1 Silent p.A227A 0.32 TCGA-53-7624-01 11 59604670 59604670 A C GIF Missense_Mutation p.V283G 0.38 deleterious(0) probably_damaging(0.958) TCGA-53-7624-01 11 6023879 6023879 G T OR56A4 Missense_Mutation p.S167Y 0.69 deleterious(0) probably_damaging(0.985) TCGA-53-7624-01 11 60541372 60541372 G T MS4A15 Silent p.A187A 0.22 TCGA-53-7624-01 11 6129885 6129885 C A OR56B4 Missense_Mutation p.P293T 0.06 deleterious(0) probably_damaging(0.991) TCGA-53-7624-01 11 62292197 62292197 G A AHNAK Missense_Mutation p.P3231L 0.43 possibly_damaging(0.905) TCGA-53-7624-01 11 62297614 62297614 C T AHNAK Silent p.V1425V 0.36 TCGA-53-7624-01 11 62356654 62356654 C G TUT1 Missense_Mutation p.R79P 0.34 deleterious(0.04) probably_damaging(0.94) TCGA-53-7624-01 11 62678102 62678102 C A CHRM1 Missense_Mutation p.W157C 0.32 deleterious(0) probably_damaging(1) TCGA-53-7624-01 11 6291459 6291459 C A CCKBR Missense_Mutation p.S182Y 0.65 deleterious(0) probably_damaging(0.999) TCGA-53-7624-01 11 63974906 63974906 G C FERMT3 Missense_Mutation p.E24Q 0.20 tolerated(0.16) benign(0.01) TCGA-53-7624-01 11 63978898 63978898 G C FERMT3 Missense_Mutation p.K222N 0.25 deleterious(0) probably_damaging(0.994) TCGA-53-7624-01 11 63994328 63994328 G T NUDT22 Silent p.L68L 0.43 TCGA-53-7624-01 11 64361120 64361120 G T SLC22A12 Silent p.T225T 0.27 TCGA-53-7624-01 11 65265501 65265501 G A MALAT1 RNA 0.39 TCGA-53-7624-01 11 65268041 65268041 G C MALAT1 RNA 0.38 TCGA-53-7624-01 11 65562768 65562768 C G OVOL1 Missense_Mutation p.Q254E 0.39 deleterious(0.05) benign(0.04) TCGA-53-7624-01 11 65766116 65766116 T A EIF1AD Missense_Mutation p.Q151L 0.36 tolerated(0.06) benign(0.113) TCGA-53-7624-01 11 66948816 66948816 G T KDM2A Silent p.R69R 0.37 TCGA-53-7624-01 11 6867461 6867461 C A OR10A5 Missense_Mutation p.P183Q 0.29 deleterious(0.03) probably_damaging(0.996) TCGA-53-7624-01 11 71949406 71949406 G T INPPL1 3'UTR 0.45 TCGA-53-7624-01 11 73670600 73670600 G A DNAJB13 Silent p.L78L 0.34 TCGA-53-7624-01 11 74056626 74056626 C T PGM2L1 Nonsense_Mutation p.W369* 0.32 TCGA-53-7624-01 11 75379385 75379385 G T MAP6 Nonsense_Mutation p.C10* 0.27 TCGA-53-7624-01 11 76063342 76063342 A G PRKRIR Silent p.D284D 0.42 TCGA-53-7624-01 11 88323860 88323860 G T GRM5 Silent p.T533T 0.43 TCGA-53-7624-01 11 92543064 92543064 G A FAT3 Silent p.L3101L 0.48 TCGA-53-7624-01 11 93796813 93796813 G T HEPHL1 Silent p.V185V 0.39 TCGA-53-7624-01 12 100660849 100660849 C G DEPDC4 Silent p.V2V 0.37 TCGA-53-7624-01 12 100897248 100897248 A T NR1H4 Missense_Mutation p.E28V 0.11 deleterious_low_confidence(0.02) benign(0.021) TCGA-53-7624-01 12 10167338 10167338 C T CLEC12B Missense_Mutation p.S136L 0.18 tolerated(0.09) possibly_damaging(0.855) TCGA-53-7624-01 12 103310881 103310881 C A PAH Missense_Mutation p.G10C 0.32 deleterious(0.02) benign(0.285) TCGA-53-7624-01 12 107371572 107371572 C G MTERFD3 Missense_Mutation p.L307F 0.18 deleterious(0) possibly_damaging(0.883) TCGA-53-7624-01 12 108082452 108082452 G C PWP1 Missense_Mutation p.Q64H 0.59 tolerated(0.11) benign(0.087) TCGA-53-7624-01 12 108603897 108603897 G T WSCD2 Splice_Site p.X166_splice 0.26 TCGA-53-7624-01 12 110017675 110017675 G A MVK Missense_Mutation p.D99N 0.30 tolerated(0.43) benign(0) TCGA-53-7624-01 12 11061628 11061628 T A TAS2R13 Silent p.I90I 0.19 TCGA-53-7624-01 12 110784087 110784087 G A ATP2A2 Missense_Mutation p.E981K 0.26 deleterious(0) probably_damaging(1) TCGA-53-7624-01 12 11183140 11183140 T A TAS2R31 Missense_Mutation p.K265N 0.51 deleterious(0.05) benign(0.014) TCGA-53-7624-01 12 112121073 112121073 G C BRAP Missense_Mutation p.L41V 0.45 tolerated(0.19) benign(0.036) TCGA-53-7624-01 12 112184050 112184050 C T ACAD10 Silent p.L771L 0.43 TCGA-53-7624-01 12 112184988 112184988 C G ACAD10 Missense_Mutation p.Q829E 0.48 tolerated(0.14) benign(0.086) TCGA-53-7624-01 12 113624489 113624489 G A RITA1 Intron 0.36 TCGA-53-7624-01 12 114793871 114793871 G T TBX5 Silent p.P341P 0.35 TCGA-53-7624-01 12 114793895 114793895 G T TBX5 Silent p.T333T 0.36 TCGA-53-7624-01 12 11546891 11546891 G T PRB2 Missense_Mutation p.P41T 0.52 tolerated_low_confidence(0.06) unknown(0) TCGA-53-7624-01 12 117290645 117290645 G T RNFT2 3'Flank 0.27 TCGA-53-7624-01 12 120593437 120593437 G C GCN1L1 Silent p.V1133V 0.51 TCGA-53-7624-01 12 120884123 120884123 C G TRIAP1 Missense_Mutation p.C18S 0.32 deleterious(0) probably_damaging(0.958) TCGA-53-7624-01 12 122413568 122413568 G A WDR66 Missense_Mutation p.G995S 0.22 deleterious(0) possibly_damaging(0.904) TCGA-53-7624-01 12 123253664 123253664 A T DENR 3'UTR 0.35 TCGA-53-7624-01 12 123983220 123983220 T G RILPL1 Missense_Mutation p.E224D 0.48 deleterious(0.01) benign(0.434) TCGA-53-7624-01 12 123984071 123984071 C A RILPL1 Missense_Mutation p.R158L 0.55 deleterious(0.01) probably_damaging(0.996) TCGA-53-7624-01 12 125455932 125455932 C T DHX37 Silent p.V369V 0.17 TCGA-53-7624-01 12 130845875 130845875 C T PIWIL1 Silent p.L606L 0.17 TCGA-53-7624-01 12 133219893 133219893 A G POLE Missense_Mutation p.Y1490H 0.51 deleterious(0) probably_damaging(0.913) TCGA-53-7624-01 12 13720197 13720197 C A GRIN2B Missense_Mutation p.G787V 0.34 deleterious(0) probably_damaging(1) TCGA-53-7624-01 12 13720199 13720199 T C GRIN2B Splice_Site p.X787_splice 0.34 TCGA-53-7624-01 12 15090912 15090912 C T ERP27 Missense_Mutation p.E57K 0.22 deleterious(0) probably_damaging(0.991) TCGA-53-7624-01 12 22624344 22624344 C A C2CD5 Nonsense_Mutation p.E783* 0.20 TCGA-53-7624-01 12 274923 274923 C A IQSEC3 Silent p.T946T 0.12 TCGA-53-7624-01 12 28123178 28123178 T G PTHLH 5'UTR 0.41 TCGA-53-7624-01 12 2939958 2939958 G T NRIP2 Silent p.P137P 0.07 TCGA-53-7624-01 12 32735365 32735365 G A FGD4 Silent p.L188L 0.40 TCGA-53-7624-01 12 32735366 32735366 G T FGD4 Nonsense_Mutation p.E189* 0.42 TCGA-53-7624-01 12 39980046 39980046 A T ABCD2 Missense_Mutation p.V567E 0.42 tolerated(0.21) benign(0.017) TCGA-53-7624-01 12 43769920 43769920 G A ADAMTS20 Missense_Mutation p.P1751L 0.35 deleterious(0) probably_damaging(1) TCGA-53-7624-01 12 45059388 45059388 G T NELL2 Silent p.I491I 0.49 TCGA-53-7624-01 12 48378332 48378332 C G COL2A1 Silent p.L628L 0.37 TCGA-53-7624-01 12 4848446 4848446 C T GALNT8 Silent p.P209P 0.27 TCGA-53-7624-01 12 49935463 49935463 G A KCNH3 Missense_Mutation p.G121R 0.47 tolerated(0.1) probably_damaging(0.938) TCGA-53-7624-01 12 49994812 49994812 G C FAM186B Missense_Mutation p.T204S 0.37 tolerated(0.13) benign(0.02) TCGA-53-7624-01 12 50501471 50501471 G C GPD1 Missense_Mutation p.G245A 0.42 tolerated(0.07) benign(0.004) TCGA-53-7624-01 12 5154900 5154900 C A KCNA5 Missense_Mutation p.H529Q 0.27 tolerated(0.95) benign(0.004) TCGA-53-7624-01 12 52960812 52960812 T C KRT74 Missense_Mutation p.K511E 0.39 deleterious_low_confidence(0.02) benign(0.017) TCGA-53-7624-01 12 53086622 53086622 G T KRT77 Missense_Mutation p.L375M 0.41 deleterious(0) probably_damaging(1) TCGA-53-7624-01 12 53237914 53237914 T C KRT78 Missense_Mutation p.Q337R 0.36 deleterious(0) benign(0.328) TCGA-53-7624-01 12 53931199 53931199 C A ATF7 Missense_Mutation p.K134N 0.31 deleterious(0.03) benign(0.052) TCGA-53-7624-01 12 54797060 54797060 T A ITGA5 Missense_Mutation p.N609Y 0.42 deleterious(0) probably_damaging(0.975) TCGA-53-7624-01 12 55862992 55862992 C A OR6C70 Missense_Mutation p.D311Y 0.31 deleterious_low_confidence(0.03) benign(0.002) TCGA-53-7624-01 12 56429122 56429122 C G IKZF4 3'UTR 0.22 TCGA-53-7624-01 12 57422608 57422608 T A MYO1A Silent p.A1021A 0.39 TCGA-53-7624-01 12 57871338 57871338 C T ARHGAP9 Silent p.E220E 0.45 TCGA-53-7624-01 12 57884035 57884035 A G MARS Missense_Mutation p.Q179R 0.03 tolerated(0.53) benign(0.005) TCGA-53-7624-01 12 58019492 58019492 G C SLC26A10 Missense_Mutation p.R552S 0.43 tolerated(0.22) benign(0) TCGA-53-7624-01 12 58122071 58122071 G A AGAP2-AS1 3'UTR 0.33 TCGA-53-7624-01 12 62104184 62104184 G T FAM19A2 3'UTR 0.36 TCGA-53-7624-01 12 6604360 6604360 G A NCAPD2 Silent p.L32L 0.53 TCGA-53-7624-01 12 66622046 66622046 A G IRAK3 Silent p.P261P 0.39 TCGA-53-7624-01 12 6772256 6772256 C G ING4 Silent p.G4G 0.48 TCGA-53-7624-01 12 7079435 7079435 C T PHB2 Missense_Mutation p.G46R 0.27 deleterious(0) probably_damaging(1) TCGA-53-7624-01 12 70956859 70956859 G A PTPRB Silent p.I1311I 0.35 TCGA-53-7624-01 12 78415551 78415551 C T NAV3 Silent p.T644T 0.45 TCGA-53-7624-01 12 78542637 78542637 C A NAV3 Silent p.R1575R 0.33 TCGA-53-7624-01 12 78594282 78594282 G T NAV3 Missense_Mutation p.D2227Y 0.27 deleterious(0) probably_damaging(1) TCGA-53-7624-01 12 81111201 81111201 A T MYF5 Missense_Mutation p.K120M 0.38 deleterious(0) probably_damaging(1) TCGA-53-7624-01 12 86373510 86373510 C A MGAT4C Nonsense_Mutation p.E332* 0.42 TCGA-53-7624-01 12 93863091 93863091 G T MRPL42 Missense_Mutation p.M10I 0.34 tolerated_low_confidence(1) benign(0) TCGA-53-7624-01 13 100617996 100617996 G T ZIC5 Missense_Mutation p.H543N 0.39 deleterious(0) probably_damaging(0.975) TCGA-53-7624-01 13 101717848 101717848 G T NALCN Missense_Mutation p.D1504E 0.34 deleterious(0) possibly_damaging(0.566) TCGA-53-7624-01 13 103718410 103718410 G T SLC10A2 Silent p.R64R 0.42 TCGA-53-7624-01 13 108860939 108860939 C A LIG4 Missense_Mutation p.W893L 0.28 deleterious(0) probably_damaging(1) TCGA-53-7624-01 13 111372069 111372069 C G ING1 Silent p.P353P 0.19 TCGA-53-7624-01 13 111944652 111944652 T - ARHGEF7 Frame_Shift_Del p.C796Afs*16 0.31 TCGA-53-7624-01 13 115064400 115064400 A C UPF3A Missense_Mutation p.K311T 0.26 deleterious(0.01) possibly_damaging(0.558) TCGA-53-7624-01 13 23907941 23907941 G A SACS Silent p.P3358P 0.20 TCGA-53-7624-01 13 24242198 24242198 T C TNFRSF19 Silent p.H272H 0.10 TCGA-53-7624-01 13 27241668 27241668 A T WASF3 Missense_Mutation p.I95F 0.41 deleterious(0) probably_damaging(0.996) TCGA-53-7624-01 13 29236608 29236608 G T POMP Missense_Mutation p.S22I 0.31 deleterious(0.01) possibly_damaging(0.694) TCGA-53-7624-01 13 36367604 36367604 G A DCLK1 Missense_Mutation p.P653S 0.34 tolerated(0.4) possibly_damaging(0.803) TCGA-53-7624-01 13 37598567 37598567 C T SUPT20H Missense_Mutation p.V448M 0.46 tolerated(0.18) benign(0.018) TCGA-53-7624-01 13 37679432 37679432 C A CSNK1A1L 5'UTR 0.35 TCGA-53-7624-01 13 42734234 42734234 C T DGKH Missense_Mutation p.R273C 0.38 deleterious(0) probably_damaging(0.994) TCGA-53-7624-01 13 44971456 44971456 A T SERP2 3'UTR 0.28 TCGA-53-7624-01 13 46288332 46288332 G T SPERT Missense_Mutation p.R391M 0.21 deleterious(0) probably_damaging(0.973) TCGA-53-7624-01 13 53418686 53418686 A T PCDH8 3'UTR 0.47 TCGA-53-7624-01 13 61109367 61109367 G C TDRD3 Missense_Mutation p.W706C 0.17 deleterious(0) probably_damaging(0.987) TCGA-53-7624-01 13 67205539 67205539 T C PCDH9 Missense_Mutation p.Q1048R 0.52 tolerated(0.42) benign(0.191) TCGA-53-7624-01 13 67205540 67205540 G T PCDH9 Missense_Mutation p.Q1048K 0.54 tolerated(0.38) benign(0.066) TCGA-53-7624-01 13 79940297 79940297 G C RBM26 Missense_Mutation p.S390C 0.53 deleterious(0.04) probably_damaging(0.946) TCGA-53-7624-01 13 88328815 88328815 T A SLITRK5 Missense_Mutation p.V391E 0.45 deleterious(0) probably_damaging(0.996) TCGA-53-7624-01 13 88329343 88329343 G C SLITRK5 Missense_Mutation p.C567S 0.43 deleterious(0) probably_damaging(0.998) TCGA-53-7624-01 13 95050795 95050795 G C GPC6 Silent p.R455R 0.45 TCGA-53-7624-01 14 101404543 101404543 G T SNORD113-5 RNA 0.25 TCGA-53-7624-01 14 105518183 105518183 G T GPR132 Silent p.L97L 0.17 TCGA-53-7624-01 14 20344473 20344473 G A OR4K2 Missense_Mutation p.G16E 0.32 deleterious(0.01) probably_damaging(1) TCGA-53-7624-01 14 21052127 21052127 G T RNASE11 Nonsense_Mutation p.C169* 0.68 TCGA-53-7624-01 14 22133673 22133673 T C OR4E2 Missense_Mutation p.I126T 0.70 deleterious(0) benign(0.176) TCGA-53-7624-01 14 23857516 23857516 C T MYH6 Missense_Mutation p.E1403K 0.53 deleterious(0.01) probably_damaging(0.999) TCGA-53-7624-01 14 23885394 23885394 A T MYH7 Missense_Mutation p.L1591Q 0.55 tolerated(1) benign(0.038) TCGA-53-7624-01 14 24801054 24801054 G A ADCY4 Silent p.F203F 0.71 TCGA-53-7624-01 14 28734129 28734129 C A BNIP3P1 RNA 0.56 TCGA-53-7624-01 14 45628364 45628364 A T FANCM Missense_Mutation p.S488C 0.56 deleterious(0) probably_damaging(0.924) TCGA-53-7624-01 14 53529775 53529775 T A DDHD1 Missense_Mutation p.N551I 0.70 deleterious(0.04) benign(0.254) TCGA-53-7624-01 14 60903708 60903708 T C C14orf39 Missense_Mutation p.D540G 0.28 deleterious(0.03) benign(0.031) TCGA-53-7624-01 14 69345744 69345744 G A ACTN1 Missense_Mutation p.L775F 0.49 deleterious(0) possibly_damaging(0.849) TCGA-53-7624-01 14 69522223 69522223 G A DCAF5 Silent p.L394L 0.26 TCGA-53-7624-01 14 70842434 70842434 G A SYNJ2BP Missense_Mutation p.R86C 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-53-7624-01 14 73421106 73421106 G T DCAF4 Missense_Mutation p.R307L 0.47 deleterious(0.01) benign(0.411) TCGA-53-7624-01 14 75138120 75138120 C A AREL1 Missense_Mutation p.D497Y 0.20 deleterious(0.01) probably_damaging(0.956) TCGA-53-7624-01 14 81610251 81610251 G A TSHR Missense_Mutation p.D617N 0.26 tolerated(1) benign(0.012) TCGA-53-7624-01 14 89163230 89163230 C A EML5 Missense_Mutation p.G769C 0.46 deleterious(0.05) probably_damaging(1) TCGA-53-7624-01 14 94007065 94007065 G T UNC79 Missense_Mutation p.R294L 0.23 deleterious(0.05) probably_damaging(0.979) TCGA-53-7624-01 14 94007066 94007066 G T UNC79 Silent p.R294R 0.24 TCGA-53-7624-01 14 94121584 94121584 T A UNC79 Missense_Mutation p.L1958Q 0.46 deleterious(0) probably_damaging(1) TCGA-53-7624-01 14 94139751 94139751 C A UNC79 Missense_Mutation p.L2093I 0.18 tolerated(0.13) probably_damaging(0.995) TCGA-53-7624-01 14 94845921 94845921 C A SERPINA1 Silent p.L315L 0.44 TCGA-53-7624-01 14 96136811 96136811 A T TCL6 RNA 0.21 TCGA-53-7624-01 14 96761467 96761467 C G ATG2B Missense_Mutation p.L1752F 0.25 tolerated(0.73) probably_damaging(0.979) TCGA-53-7624-01 14 96811723 96811723 C A ATG2B Splice_Site p.X109_splice 0.48 TCGA-53-7624-01 15 102312430 102312430 C A RN7SL209P 3'Flank 0.44 TCGA-53-7624-01 15 25213180 25213180 G T SNURF Missense_Mutation p.G71V 0.40 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-53-7624-01 15 25310177 25310177 C G SNORD116-6 RNA 0.45 TCGA-53-7624-01 15 25312956 25312957 - A SNORD116-7 RNA 0.25 TCGA-53-7624-01 15 25427354 25427354 C A SNORD115-6 3'Flank 0.14 TCGA-53-7624-01 15 25427583 25427583 C A SNORD115-6 3'Flank 0.38 TCGA-53-7624-01 15 27128320 27128320 C G GABRA5 Missense_Mutation p.I72M 0.12 deleterious(0.02) possibly_damaging(0.888) TCGA-53-7624-01 15 28518037 28518037 C A HERC2 Intron 0.23 TCGA-53-7624-01 15 31776342 31776342 G A OTUD7A Missense_Mutation p.R646W 0.15 deleterious(0) probably_damaging(0.995) TCGA-53-7624-01 15 33893753 33893753 G T RYR3 Missense_Mutation p.S641I 0.19 probably_damaging(0.999) TCGA-53-7624-01 15 40226472 40226472 G T EIF2AK4 Nonsense_Mutation p.E26* 0.20 TCGA-53-7624-01 15 42166127 42166127 C A SPTBN5 Missense_Mutation p.Q1602H 0.18 benign(0.052) TCGA-53-7624-01 15 43749011 43749011 T C TP53BP1 Missense_Mutation p.R599G 0.41 tolerated(0.18) benign(0.273) TCGA-53-7624-01 15 43831748 43831748 G A PPIP5K1 Missense_Mutation p.S1140L 0.40 deleterious_low_confidence(0.01) benign(0.043) TCGA-53-7624-01 15 49620701 49620701 C T GALK2 3'UTR 0.60 TCGA-53-7624-01 15 50190352 50190352 C A ATP8B4 Missense_Mutation p.A796S 0.42 tolerated(0.06) probably_damaging(0.999) TCGA-53-7624-01 15 52017177 52017177 C G LYSMD2 Missense_Mutation p.A139P 0.23 tolerated(0.27) benign(0.018) TCGA-53-7624-01 15 55972348 55972348 C T PRTG Missense_Mutation p.D293N 0.33 tolerated(0.06) probably_damaging(0.976) TCGA-53-7624-01 15 56122100 56122100 C A NEDD4 Missense_Mutation p.D1247Y 0.08 deleterious(0) probably_damaging(1) TCGA-53-7624-01 15 56207620 56207620 G A NEDD4 Silent p.S470S 0.43 TCGA-53-7624-01 15 57511745 57511745 G T TCF12 Intron 0.53 TCGA-53-7624-01 15 63956789 63956789 C G HERC1 Missense_Mutation p.D2854H 0.33 possibly_damaging(0.778) TCGA-53-7624-01 15 65622694 65622694 G T IGDCC3 Missense_Mutation p.Q599K 0.47 tolerated(0.52) benign(0.314) TCGA-53-7624-01 15 65946348 65946348 T A SLC24A1 Silent p.L1077L 0.51 TCGA-53-7624-01 15 66821249 66821249 G A ZWILCH Silent p.R343R 0.09 TCGA-53-7624-01 15 67893060 67893060 G C MAP2K5 Missense_Mutation p.G173A 0.25 deleterious(0.01) probably_damaging(0.994) TCGA-53-7624-01 15 69006979 69006979 C A CORO2B Missense_Mutation p.H283N 0.42 tolerated(1) benign(0.009) TCGA-53-7624-01 15 69548323 69548323 G C GLCE Missense_Mutation p.E60Q 0.22 tolerated_low_confidence(0.23) benign(0.001) TCGA-53-7624-01 15 72190535 72190535 T C MYO9A Missense_Mutation p.T1437A 0.15 tolerated_low_confidence(0.32) benign(0.002) TCGA-53-7624-01 15 75979977 75979977 G T CSPG4 Silent p.G1143G 0.38 TCGA-53-7624-01 15 79186409 79186409 G T MORF4L1 Silent p.A252A 0.39 TCGA-53-7624-01 15 79186433 79186433 A G MORF4L1 Missense_Mutation p.I260M 0.38 deleterious(0) probably_damaging(0.949) TCGA-53-7624-01 15 81212471 81212471 T A KIAA1199 Missense_Mutation p.C612S 0.44 deleterious(0) probably_damaging(0.998) TCGA-53-7624-01 15 83926398 83926398 G T BNC1 Silent p.P927P 0.43 TCGA-53-7624-01 15 89442734 89442734 G T MFGE8 Silent p.S352S 0.36 TCGA-53-7624-01 15 89450519 89450519 C A MFGE8 Missense_Mutation p.L98F 0.36 deleterious(0) possibly_damaging(0.867) TCGA-53-7624-01 15 91334006 91334006 G T BLM Missense_Mutation p.G984V 0.31 deleterious(0) probably_damaging(1) TCGA-53-7624-01 15 92690297 92690297 C T SLCO3A1 Silent p.C532C 0.20 TCGA-53-7624-01 16 11133682 11133682 C T CLEC16A Missense_Mutation p.H537Y 0.27 tolerated(0.07) possibly_damaging(0.487) TCGA-53-7624-01 16 1451662 1451662 C A UNKL Missense_Mutation p.G169C 0.21 tolerated(0.08) benign(0.005) TCGA-53-7624-01 16 15811107 15811107 C G MYH11 Silent p.R1805R 0.40 TCGA-53-7624-01 16 21814035 21814035 C - RRN3P1 RNA 0.27 TCGA-53-7624-01 16 23079778 23079778 C T USP31 Silent p.K1216K 0.36 TCGA-53-7624-01 16 24231290 24231290 G C PRKCB 3'UTR 0.32 TCGA-53-7624-01 16 24582303 24582303 C T RBBP6 Missense_Mutation p.P1306S 0.26 deleterious_low_confidence(0) unknown(0) TCGA-53-7624-01 16 27549128 27549128 T C GTF3C1 Silent p.L243L 0.38 TCGA-53-7624-01 16 28935892 28935892 C T RABEP2 Missense_Mutation p.E36K 0.37 tolerated(0.06) benign(0.305) TCGA-53-7624-01 16 28963476 28963476 C G NFATC2IP Missense_Mutation p.I137M 0.31 tolerated(0.1) possibly_damaging(0.595) TCGA-53-7624-01 16 3024317 3024317 G A PKMYT1 Nonsense_Mutation p.Q361* 0.60 TCGA-53-7624-01 16 30747542 30747542 G A SRCAP Missense_Mutation p.E2251K 0.28 possibly_damaging(0.899) TCGA-53-7624-01 16 31488241 31488241 C A TGFB1I1 Silent p.A343A 0.31 TCGA-53-7624-01 16 3434811 3434811 G C ZSCAN32 Silent p.L82L 0.30 TCGA-53-7624-01 16 46998591 46998591 C - DNAJA2 Frame_Shift_Del p.E236Kfs*34 0.20 TCGA-53-7624-01 16 51172875 51172875 C A SALL1 Missense_Mutation p.K1086N 0.27 deleterious(0) probably_damaging(0.99) TCGA-53-7624-01 16 51173830 51173830 C A SALL1 Missense_Mutation p.C768F 0.42 deleterious(0) probably_damaging(1) TCGA-53-7624-01 16 53404791 53404791 G A RP11-44F14.1 RNA 0.40 TCGA-53-7624-01 16 55731844 55731844 A T SLC6A2 Silent p.A432A 0.55 TCGA-53-7624-01 16 57957275 57957275 C T CNGB1 Silent p.L515L 0.30 TCGA-53-7624-01 16 640428 640428 G T RAB40C Missense_Mutation p.S46I 0.31 deleterious(0.04) benign(0.089) TCGA-53-7624-01 16 66946294 66946294 T A CDH16 Missense_Mutation p.T467S 0.19 tolerated(0.09) benign(0.259) TCGA-53-7624-01 16 67235956 67235956 G A ELMO3 Missense_Mutation p.R429K 0.22 tolerated(0.38) benign(0.005) TCGA-53-7624-01 16 67682620 67682620 A G RLTPR Missense_Mutation p.H491R 0.23 tolerated(0.08) benign(0.001) TCGA-53-7624-01 16 67942639 67942639 C A PSKH1 5'UTR 0.26 TCGA-53-7624-01 16 70711761 70711761 C A MTSS1L Missense_Mutation p.Q222H 0.50 deleterious(0.02) probably_damaging(0.998) TCGA-53-7624-01 16 74499596 74499596 C A GLG1 Missense_Mutation p.R882M 0.27 deleterious(0.02) possibly_damaging(0.482) TCGA-53-7624-01 16 74921599 74921599 T A WDR59 Missense_Mutation p.T801S 0.51 tolerated(0.53) benign(0.002) TCGA-53-7624-01 16 75269347 75269347 C T BCAR1 Missense_Mutation p.A530T 0.25 deleterious(0.01) benign(0.008) TCGA-53-7624-01 16 75674136 75674137 - T KARS Frame_Shift_Ins p.Y140Ifs*2 0.38 TCGA-53-7624-01 16 81095289 81095290 - G C16orf46 Frame_Shift_Ins p.L222Sfs*6 0.17 TCGA-53-7624-01 16 84623841 84623841 C G COTL1 Missense_Mutation p.R63P 0.19 deleterious(0) probably_damaging(0.999) TCGA-53-7624-01 16 87364905 87364905 G A FBXO31 Missense_Mutation p.L537F 0.31 tolerated(0.22) benign(0.019) TCGA-53-7624-01 16 87678547 87678547 G T JPH3 Missense_Mutation p.A356S 0.21 tolerated(0.54) benign(0.007) TCGA-53-7624-01 17 11757569 11757569 G T DNAH9 Nonsense_Mutation p.E3253* 0.69 TCGA-53-7624-01 17 12626276 12626276 G C MYOCD Silent p.V122V 0.29 TCGA-53-7624-01 17 27899013 27899013 G A TP53I13 Missense_Mutation p.G151R 0.74 tolerated_low_confidence(0.4) benign(0.045) TCGA-53-7624-01 17 33286658 33286658 C A CCT6B Missense_Mutation p.G50V 0.46 deleterious(0) probably_damaging(0.957) TCGA-53-7624-01 17 3446796 3446796 G A TRPV3 Silent p.C146C 0.31 TCGA-53-7624-01 17 3655072 3655072 G A ITGAE Nonsense_Mutation p.Q589* 0.31 TCGA-53-7624-01 17 3657179 3657179 G A ITGAE Silent p.S475S 0.23 TCGA-53-7624-01 17 36861943 36861943 A T MLLT6 Missense_Mutation p.N20Y 0.21 deleterious(0) unknown(0) TCGA-53-7624-01 17 3802963 3802963 G T P2RX1 Nonsense_Mutation p.Y280* 0.76 TCGA-53-7624-01 17 39551740 39551740 C A KRT31 Nonsense_Mutation p.E242* 0.53 TCGA-53-7624-01 17 41477332 41477332 G T ARL4D Missense_Mutation p.G78W 0.65 deleterious(0) probably_damaging(1) TCGA-53-7624-01 17 42427687 42427687 G T GRN Missense_Mutation p.W147C 0.69 deleterious(0) probably_damaging(1) TCGA-53-7624-01 17 45901510 45901510 G C MRPL10 3'UTR 0.33 TCGA-53-7624-01 17 46703128 46703128 C T HOXB9 Silent p.E168E 0.49 TCGA-53-7624-01 17 4863061 4863061 C A SPAG7 Missense_Mutation p.G190C 0.68 deleterious(0) probably_damaging(0.999) TCGA-53-7624-01 17 4937260 4937260 G A SLC52A1 Missense_Mutation p.A175V 0.70 tolerated(0.33) benign(0.005) TCGA-53-7624-01 17 51902314 51902314 G T KIF2B Silent p.R640R 0.54 TCGA-53-7624-01 17 55191939 55191939 G T AKAP1 Missense_Mutation p.Q741H 0.20 deleterious(0.01) benign(0.076) TCGA-53-7624-01 17 63221182 63221182 G A RGS9 Silent p.P490P 0.29 TCGA-53-7624-01 17 64880696 64880696 G T CACNG5 Missense_Mutation p.R163M 0.74 deleterious(0.01) possibly_damaging(0.853) TCGA-53-7624-01 17 67171589 67171589 G T ABCA10 Nonsense_Mutation p.C945* 0.16 TCGA-53-7624-01 17 68171829 68171829 C T KCNJ2 Missense_Mutation p.L217F 0.16 deleterious(0) probably_damaging(0.982) TCGA-53-7624-01 17 72348225 72348225 C A AC103809.2 Missense_Mutation p.C16F 0.77 possibly_damaging(0.516) TCGA-53-7624-01 17 72368299 72368299 C A GPR142 Missense_Mutation p.H317N 0.76 deleterious(0.01) probably_damaging(1) TCGA-53-7624-01 17 72875708 72875708 G A FADS6 Silent p.I244I 0.19 TCGA-53-7624-01 17 72943272 72943272 G T OTOP3 Missense_Mutation p.R441L 0.76 tolerated(0.3) benign(0.268) TCGA-53-7624-01 17 73750667 73750667 G A ITGB4 Silent p.V1443V 0.16 TCGA-53-7624-01 17 7576852 7576852 C A TP53 Splice_Site p.X331_splice 0.71 TCGA-53-7624-01 18 10672856 10672856 C A PIEZO2 Missense_Mutation p.D2613Y 0.57 deleterious(0.01) benign(0.315) TCGA-53-7624-01 18 43440174 43440174 C A EPG5 Missense_Mutation p.G2302W 0.43 deleterious(0) probably_damaging(0.998) TCGA-53-7624-01 18 47432935 47432935 C A MYO5B Silent p.L756L 0.55 TCGA-53-7624-01 18 9887583 9887583 C T TXNDC2 Silent p.P369P 0.27 TCGA-53-7624-01 19 10610419 10610419 C A KEAP1 Missense_Mutation p.K97N 0.78 deleterious(0) probably_damaging(0.986) TCGA-53-7624-01 19 10670525 10670525 C T KRI1 Silent p.Q302Q 0.43 TCGA-53-7624-01 19 11130300 11130300 C T SMARCA4 Nonsense_Mutation p.Q847* 0.69 TCGA-53-7624-01 19 11289130 11289130 G A KANK2 Missense_Mutation p.P479S 0.67 tolerated(0.74) benign(0.09) TCGA-53-7624-01 19 11408889 11408889 C T TSPAN16 Silent p.L47L 0.62 TCGA-53-7624-01 19 11507958 11507958 C A RGL3 Missense_Mutation p.C665F 0.54 deleterious(0.01) unknown(0) TCGA-53-7624-01 19 15739235 15739235 C A CYP4F8 RNA 0.67 TCGA-53-7624-01 19 17086925 17086925 C A CPAMD8 Missense_Mutation p.G646W 0.70 deleterious(0) probably_damaging(1) TCGA-53-7624-01 19 17766706 17766706 G T UNC13A Silent p.P423P 0.70 TCGA-53-7624-01 19 19453608 19453608 G T MAU2 Missense_Mutation p.Q302H 0.55 tolerated(0.17) possibly_damaging(0.796) TCGA-53-7624-01 19 21909959 21909959 G - ZNF100 Frame_Shift_Del p.S386Hfs*64 0.25 TCGA-53-7624-01 19 22170039 22170039 C A ZNF208 Nonsense_Mutation p.E69* 0.44 TCGA-53-7624-01 19 23406206 23406206 C A ZNF724P Missense_Mutation p.A281S 0.82 deleterious(0.03) possibly_damaging(0.76) TCGA-53-7624-01 19 33359543 33359543 G A SLC7A9 5'UTR 0.42 TCGA-53-7624-01 19 3449039 3449039 A T NFIC Missense_Mutation p.E329V 0.64 deleterious(0.05) probably_damaging(0.982) TCGA-53-7624-01 19 37676536 37676536 C - ZNF585B Frame_Shift_Del p.V635Cfs*43 0.31 TCGA-53-7624-01 19 38877102 38877102 G A GGN Missense_Mutation p.S267L 0.06 tolerated_low_confidence(0.08) unknown(0) TCGA-53-7624-01 19 39924008 39924008 C A RPS16 Missense_Mutation p.D116Y 0.35 deleterious(0) probably_damaging(0.933) TCGA-53-7624-01 19 40554637 40554638 - A ZNF780B Frame_Shift_Ins p.D26* 0.21 TCGA-53-7624-01 19 41447374 41447374 A T AC092071.1 5'Flank 0.21 TCGA-53-7624-01 19 42911538 42911538 C T LIPE Missense_Mutation p.R642H 0.51 tolerated(0.07) probably_damaging(0.962) TCGA-53-7624-01 19 43689015 43689015 C T PSG5 Missense_Mutation p.A117T 0.55 tolerated(1) benign(0.022) TCGA-53-7624-01 19 45655642 45655642 C G NKPD1 Missense_Mutation p.E685Q 0.27 tolerated(0.13) benign(0.05) TCGA-53-7624-01 19 45973846 45973846 T C FOSB Intron 0.68 TCGA-53-7624-01 19 46094750 46094750 G A GPR4 Silent p.F125F 0.17 TCGA-53-7624-01 19 46130088 46130088 C T EML2 Missense_Mutation p.E407K 0.27 deleterious(0.01) possibly_damaging(0.469) TCGA-53-7624-01 19 46664053 46664053 C T IGFL2 Missense_Mutation p.L97F 0.59 tolerated(0.71) benign(0.03) TCGA-53-7624-01 19 48636252 48636252 C A LIG1 Missense_Mutation p.G571V 0.54 deleterious(0) probably_damaging(0.998) TCGA-53-7624-01 19 51215347 51215347 G T SHANK1 Missense_Mutation p.P273T 0.31 probably_damaging(0.991) TCGA-53-7624-01 19 51466679 51466679 C G KLK6 Missense_Mutation p.M108I 0.84 deleterious(0.01) probably_damaging(0.998) TCGA-53-7624-01 19 53652546 53652546 C A ZNF347 Missense_Mutation p.R30S 0.19 deleterious(0) possibly_damaging(0.638) TCGA-53-7624-01 19 53740783 53740783 T - ZNF677 Frame_Shift_Del p.E400Rfs*213 0.14 TCGA-53-7624-01 19 54233176 54233176 G A MIR518E RNA 0.18 TCGA-53-7624-01 19 54312974 54312974 G T NLRP12 Missense_Mutation p.H647N 0.56 deleterious(0) possibly_damaging(0.876) TCGA-53-7624-01 19 54673393 54673393 C T TMC4 Missense_Mutation p.R106K 0.63 tolerated(0.28) benign(0.004) TCGA-53-7624-01 19 54969281 54969281 G T LENG8 Splice_Site p.X635_splice 0.62 TCGA-53-7624-01 19 55085923 55085923 C A LILRA2 Missense_Mutation p.P76T 0.13 deleterious(0.03) benign(0.049) TCGA-53-7624-01 19 55481501 55481501 C A NLRP2 Missense_Mutation p.Q40K 0.20 tolerated(0.26) probably_damaging(0.995) TCGA-53-7624-01 19 55481502 55481502 A G NLRP2 Missense_Mutation p.Q40R 0.20 tolerated(0.1) probably_damaging(0.996) TCGA-53-7624-01 19 55711607 55711607 T G PTPRH Missense_Mutation p.T473P 0.54 probably_damaging(0.979) TCGA-53-7624-01 19 56379074 56379074 G T NLRP4 Splice_Site p.X729_splice 0.56 TCGA-53-7624-01 19 56392993 56392993 G A NLRP4 3'UTR 0.19 TCGA-53-7624-01 19 57642177 57642177 A G USP29 Missense_Mutation p.T712A 0.54 deleterious(0.03) possibly_damaging(0.69) TCGA-53-7624-01 19 5778498 5778498 C A CATSPERD Silent p.S736S 0.68 TCGA-53-7624-01 19 58199621 58199621 C T ZNF551 Nonsense_Mutation p.R660* 0.33 TCGA-53-7624-01 19 58578848 58578849 - A ZNF135 Frame_Shift_Ins p.A358Sfs*25 0.34 TCGA-53-7624-01 19 6306675 6306675 A C ACER1 3'UTR 0.68 TCGA-53-7624-01 1 100960462 100960462 G T CDC14A Missense_Mutation p.R409L 0.54 deleterious(0.03) benign(0.429) TCGA-53-7624-01 1 102269862 102269862 T C OLFM3 Missense_Mutation p.N437D 0.45 tolerated(0.45) probably_damaging(0.995) TCGA-53-7624-01 1 117150881 117150881 C A IGSF3 Missense_Mutation p.C302F 0.50 deleterious(0) probably_damaging(1) TCGA-53-7624-01 1 118550695 118550695 A G SPAG17 Missense_Mutation p.I1520T 0.45 deleterious(0) possibly_damaging(0.786) TCGA-53-7624-01 1 119575622 119575622 T A WARS2 Missense_Mutation p.E332V 0.43 tolerated(0.21) benign(0.179) TCGA-53-7624-01 1 119575623 119575623 C G WARS2 Missense_Mutation p.E332Q 0.43 tolerated(0.39) benign(0.075) TCGA-53-7624-01 1 12955626 12955626 A T PRAMEF10 Missense_Mutation p.L18Q 0.55 deleterious(0) probably_damaging(0.999) TCGA-53-7624-01 1 1417959 1417959 G T ATAD3B Missense_Mutation p.A239S 0.72 tolerated(0.16) benign(0.14) TCGA-53-7624-01 1 144811944 144811944 G T NBPF9 Missense_Mutation p.Q66H 0.18 deleterious(0.03) benign(0.198) TCGA-53-7624-01 1 150259146 150259146 C A C1orf51 Missense_Mutation p.P313Q 0.46 deleterious(0.04) probably_damaging(0.944) TCGA-53-7624-01 1 151076126 151076126 C T GABPB2 Silent p.P237P 0.30 TCGA-53-7624-01 1 152187488 152187488 C A HRNR Missense_Mutation p.G2206V 0.07 unknown(0) TCGA-53-7624-01 1 152188472 152188472 G A HRNR Missense_Mutation p.S1878L 0.08 unknown(0) TCGA-53-7624-01 1 152191718 152191718 G C HRNR Missense_Mutation p.S796C 0.43 unknown(0) TCGA-53-7624-01 1 152326480 152326480 C A FLG2 Missense_Mutation p.G1261V 0.30 unknown(0) TCGA-53-7624-01 1 153004960 153004960 G C SPRR1B Missense_Mutation p.E47Q 0.29 tolerated(0.41) probably_damaging(0.992) TCGA-53-7624-01 1 153430358 153430358 G C S100A7 Missense_Mutation p.S77C 0.30 tolerated(0.11) benign(0.108) TCGA-53-7624-01 1 153905780 153905780 C T DENND4B Missense_Mutation p.G1116S 0.50 tolerated(0.09) probably_damaging(0.998) TCGA-53-7624-01 1 15392292 15392292 G A KAZN Intron 0.71 TCGA-53-7624-01 1 154241426 154241426 G A UBAP2L Missense_Mutation p.G1055D 0.39 deleterious(0) possibly_damaging(0.838) TCGA-53-7624-01 1 154317235 154317235 G T ATP8B2 Missense_Mutation p.A787S 0.35 deleterious(0.04) benign(0.055) TCGA-53-7624-01 1 154401818 154401818 G T IL6R Nonsense_Mutation p.G78* 0.21 TCGA-53-7624-01 1 155630103 155630103 C A YY1AP1 Missense_Mutation p.R671I 0.33 deleterious_low_confidence(0) possibly_damaging(0.828) TCGA-53-7624-01 1 156642186 156642186 C T NES Silent p.K598K 0.37 TCGA-53-7624-01 1 156883035 156883035 C T PEAR1 Silent p.T824T 0.11 TCGA-53-7624-01 1 158325898 158325898 G T CD1E Intron 0.17 TCGA-53-7624-01 1 158577123 158577123 A G OR10Z1 Missense_Mutation p.T299A 0.33 tolerated(0.59) benign(0) TCGA-53-7624-01 1 158613176 158613176 G T SPTA1 Missense_Mutation p.L1460I 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-53-7624-01 1 158815577 158815577 A T MNDA Missense_Mutation p.K257N 0.19 deleterious(0) probably_damaging(1) TCGA-53-7624-01 1 159410379 159410379 C A OR10J1 Silent p.T277T 0.41 TCGA-53-7624-01 1 159923122 159923122 T G SLAMF9 Missense_Mutation p.Q123P 0.30 deleterious(0.02) probably_damaging(0.928) TCGA-53-7624-01 1 160011696 160011696 A T KCNJ10 Silent p.I209I 0.52 TCGA-53-7624-01 1 160063857 160063857 C A IGSF8 Missense_Mutation p.A183S 0.37 tolerated(0.61) benign(0.174) TCGA-53-7624-01 1 160129245 160129245 C A ATP1A4 Missense_Mutation p.S236Y 0.42 deleterious(0.02) possibly_damaging(0.902) TCGA-53-7624-01 1 160385889 160385889 G T VANGL2 Missense_Mutation p.G37W 0.43 deleterious(0) unknown(0) TCGA-53-7624-01 1 160388994 160388994 T A VANGL2 Missense_Mutation p.L132Q 0.37 deleterious(0) possibly_damaging(0.776) TCGA-53-7624-01 1 160970032 160970032 G C F11R Silent p.T165T 0.34 TCGA-53-7624-01 1 161089340 161089340 G T NIT1 Missense_Mutation p.R132L 0.40 tolerated(0.15) benign(0.116) TCGA-53-7624-01 1 161123883 161123883 G A UFC1 Silent p.L32L 0.40 TCGA-53-7624-01 1 161641217 161641217 C A FCGR2B Missense_Mutation p.Q57K 0.20 deleterious(0.01) benign(0.007) TCGA-53-7624-01 1 162353418 162353418 G T C1orf226 Missense_Mutation p.R298L 0.33 deleterious(0.03) probably_damaging(0.991) TCGA-53-7624-01 1 16262537 16262537 C T SPEN Missense_Mutation p.R3268C 0.78 probably_damaging(0.998) TCGA-53-7624-01 1 16356276 16356276 C A CLCNKA Missense_Mutation p.F426L 0.48 deleterious(0) probably_damaging(1) TCGA-53-7624-01 1 165632275 165632275 C T ALDH9A1 3'UTR 0.23 TCGA-53-7624-01 1 167096795 167096795 G T DUSP27 Silent p.A809A 0.32 TCGA-53-7624-01 1 167871020 167871020 T A ADCY10 Missense_Mutation p.R106W 0.39 deleterious(0) probably_damaging(0.949) TCGA-53-7624-01 1 169564054 169564054 C G SELP Missense_Mutation p.W721C 0.29 deleterious(0.04) possibly_damaging(0.882) TCGA-53-7624-01 1 169699709 169699709 G T SELE Nonsense_Mutation p.C193* 0.35 TCGA-53-7624-01 1 17281895 17281895 G A CROCC Missense_Mutation p.R1185H 0.93 probably_damaging(0.977) TCGA-53-7624-01 1 173494064 173494064 G T SLC9C2 Missense_Mutation p.L790I 0.39 deleterious(0.02) possibly_damaging(0.521) TCGA-53-7624-01 1 173616017 173616017 T A ANKRD45 Missense_Mutation p.Q155L 0.41 deleterious(0.01) possibly_damaging(0.542) TCGA-53-7624-01 1 175372391 175372391 G T TNR Nonsense_Mutation p.Y287* 0.28 TCGA-53-7624-01 1 176525947 176525947 G T PAPPA2 Missense_Mutation p.Q163H 0.37 deleterious_low_confidence(0.05) benign(0.19) TCGA-53-7624-01 1 176668658 176668658 C A PAPPA2 Missense_Mutation p.R1057S 0.42 deleterious(0.05) possibly_damaging(0.644) TCGA-53-7624-01 1 176740202 176740202 C A PAPPA2 Missense_Mutation p.A1534D 0.38 deleterious(0) probably_damaging(0.965) TCGA-53-7624-01 1 1849837 1849837 C A TMEM52 Silent p.L68L 0.66 TCGA-53-7624-01 1 186273948 186273948 A G PRG4 Silent p.Q164Q 0.39 TCGA-53-7624-01 1 186316471 186316471 G C TPR Missense_Mutation p.Q966E 0.38 benign(0) TCGA-53-7624-01 1 190203589 190203589 C A BRINP3 Missense_Mutation p.G213C 0.16 deleterious(0) probably_damaging(1) TCGA-53-7624-01 1 196876549 196876549 C A CFHR4 Nonsense_Mutation p.C239* 0.32 TCGA-53-7624-01 1 197404110 197404110 T A CRB1 Silent p.L1039L 0.37 TCGA-53-7624-01 1 198721885 198721885 C T PTPRC Silent p.L1165L 0.15 TCGA-53-7624-01 1 200008890 200008890 G T NR5A2 Missense_Mutation p.G57W 0.41 deleterious_low_confidence(0) benign(0.003) TCGA-53-7624-01 1 202538290 202538290 G T PPP1R12B Nonsense_Mutation p.E943* 0.16 TCGA-53-7624-01 1 202858261 202858261 G A RABIF 5'UTR 0.25 TCGA-53-7624-01 1 205028300 205028300 G A CNTN2 Silent p.L192L 0.25 TCGA-53-7624-01 1 206566147 206566147 A G SRGAP2 Silent p.V110V 0.19 TCGA-53-7624-01 1 207041895 207041895 G T IL20 Nonsense_Mutation p.E173* 0.41 TCGA-53-7624-01 1 207135640 207135640 C A FCAMR Silent p.P190P 0.35 TCGA-53-7624-01 1 207651356 207651356 C A CR2 Missense_Mutation p.P1010H 0.29 deleterious(0) possibly_damaging(0.878) TCGA-53-7624-01 1 207868009 207868009 C A CR1L Missense_Mutation p.Q259K 0.33 tolerated(0.44) benign(0.386) TCGA-53-7624-01 1 208062847 208062847 C A CD34 Missense_Mutation p.R239S 0.55 tolerated(0.16) benign(0.422) TCGA-53-7624-01 1 216595587 216595587 G C USH2A Missense_Mutation p.T31S 0.46 benign(0.001) TCGA-53-7624-01 1 220088748 220088748 C A SLC30A10 3'UTR 0.43 TCGA-53-7624-01 1 220088749 220088749 C A SLC30A10 3'UTR 0.43 TCGA-53-7624-01 1 220161972 220161972 C A EPRS Missense_Mutation p.G912V 0.21 deleterious(0.01) probably_damaging(1) TCGA-53-7624-01 1 220275943 220275943 A G IARS2 Missense_Mutation p.I286V 0.22 tolerated(0.51) benign(0.009) TCGA-53-7624-01 1 228335203 228335203 G T GUK1 Silent p.R137R 0.47 TCGA-53-7624-01 1 228412281 228412281 G A OBSCN Silent p.K1017K 0.26 TCGA-53-7624-01 1 228646214 228646214 C G HIST3H2BB 3'UTR 0.48 TCGA-53-7624-01 1 233515375 233515375 G T MLK4 Missense_Mutation p.G875W 0.54 deleterious(0.03) possibly_damaging(0.844) TCGA-53-7624-01 1 235971799 235971799 C G LYST Silent p.V773V 0.25 TCGA-53-7624-01 1 236205510 236205510 C T NID1 Missense_Mutation p.V279M 0.26 deleterious(0.01) possibly_damaging(0.648) TCGA-53-7624-01 1 237659932 237659932 G T RYR2 Missense_Mutation p.V695L 0.35 possibly_damaging(0.904) TCGA-53-7624-01 1 237754253 237754253 A G RYR2 Missense_Mutation p.K1374R 0.40 benign(0.373) TCGA-53-7624-01 1 237796962 237796962 A G RYR2 Missense_Mutation p.M2214V 0.34 possibly_damaging(0.897) TCGA-53-7624-01 1 237947029 237947029 C G RYR2 Missense_Mutation p.S4006C 0.22 probably_damaging(0.999) TCGA-53-7624-01 1 237955573 237955573 C G RYR2 Missense_Mutation p.L4578V 0.31 possibly_damaging(0.828) TCGA-53-7624-01 1 241799078 241799078 T A CHML 5'UTR 0.47 TCGA-53-7624-01 1 244736041 244736042 TG C C1orf101 Frame_Shift_Del p.E640Kfs*11 0.10 TCGA-53-7624-01 1 247587329 247587329 C G NLRP3 Missense_Mutation p.T195R 0.34 tolerated(0.12) benign(0.259) TCGA-53-7624-01 1 247752517 247752517 C A OR2G2 Missense_Mutation p.R286S 0.25 deleterious(0.01) benign(0.001) TCGA-53-7624-01 1 248085175 248085175 C A OR2T8 Missense_Mutation p.L286I 0.42 deleterious(0.05) benign(0.033) TCGA-53-7624-01 1 248129013 248129013 C A OR2AK2 Missense_Mutation p.A127D 0.20 tolerated(0.17) probably_damaging(0.999) TCGA-53-7624-01 1 248129014 248129014 C A OR2AK2 Silent p.A127A 0.21 TCGA-53-7624-01 1 248263256 248263256 C G OR2L13 Silent p.V193V 0.20 TCGA-53-7624-01 1 248458804 248458804 A C OR2T12 Missense_Mutation p.F26C 0.54 tolerated(0.06) probably_damaging(0.977) TCGA-53-7624-01 1 248512378 248512378 T C OR14C36 Missense_Mutation p.L101P 0.16 deleterious(0) probably_damaging(0.928) TCGA-53-7624-01 1 248570315 248570315 C A OR2T1 Nonsense_Mutation p.Y340* 0.20 TCGA-53-7624-01 1 248616547 248616547 G T OR2T2 Missense_Mutation p.W150L 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-53-7624-01 1 248685669 248685669 G A OR2G6 Missense_Mutation p.C241Y 0.28 deleterious(0) probably_damaging(0.998) TCGA-53-7624-01 1 31188132 31188132 A T MATN1 Missense_Mutation p.V411E 0.62 deleterious(0) probably_damaging(1) TCGA-53-7624-01 1 36506023 36506023 G T AGO3 Missense_Mutation p.C718F 0.39 deleterious(0) probably_damaging(0.987) TCGA-53-7624-01 1 37356671 37356671 G A GRIK3 Missense_Mutation p.P48S 0.31 deleterious(0.03) benign(0.057) TCGA-53-7624-01 1 42880284 42880284 G T RIMKLA Missense_Mutation p.C272F 0.45 deleterious(0) probably_damaging(0.995) TCGA-53-7624-01 1 43803513 43803513 G A MPL 5'UTR 0.24 TCGA-53-7624-01 1 44087679 44087679 C G PTPRF 3'UTR 0.07 TCGA-53-7624-01 1 46206597 46206597 G C IPP Missense_Mutation p.Q234E 0.21 deleterious(0.04) benign(0.338) TCGA-53-7624-01 1 46206826 46206826 G A IPP Silent p.F157F 0.21 TCGA-53-7624-01 1 46206837 46206837 G C IPP Missense_Mutation p.L154V 0.21 deleterious(0.01) probably_damaging(0.942) TCGA-53-7624-01 1 47279949 47279949 A T CYP4B1 Missense_Mutation p.R282W 0.41 deleterious(0) probably_damaging(0.97) TCGA-53-7624-01 1 52912093 52912093 C G ZCCHC11 Missense_Mutation p.G1179R 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-53-7624-01 1 57171805 57171805 C T PRKAA2 Missense_Mutation p.P445L 0.27 deleterious(0.05) possibly_damaging(0.493) TCGA-53-7624-01 1 6169998 6169998 A T CHD5 Missense_Mutation p.L1812Q 0.74 deleterious(0.03) possibly_damaging(0.903) TCGA-53-7624-01 1 6267532 6267532 G C RNF207 Silent p.A95A 1.00 TCGA-53-7624-01 1 70339168 70339168 G T LRRC7 Intron 0.22 TCGA-53-7624-01 1 71418536 71418536 C T PTGER3 3'UTR 0.32 TCGA-53-7624-01 1 72163763 72163763 C A NEGR1 Missense_Mutation p.G199W 0.54 deleterious(0) probably_damaging(1) TCGA-53-7624-01 1 74575142 74575142 A T LRRIQ3 Missense_Mutation p.L268H 0.31 tolerated(0.06) possibly_damaging(0.557) TCGA-53-7624-01 1 74664010 74664010 C A FPGT-TNNI3K Silent p.T29T 0.17 TCGA-53-7624-01 1 74664011 74664011 C A FPGT-TNNI3K Missense_Mutation p.Q30K 0.19 tolerated_low_confidence(0.24) benign(0) TCGA-53-7624-01 1 79383546 79383546 G T ELTD1 Missense_Mutation p.L551I 0.22 tolerated(0.58) probably_damaging(0.99) TCGA-53-7624-01 1 82409209 82409209 C T LPHN2 Silent p.C318C 0.55 TCGA-53-7624-01 1 8390955 8390955 C A SLC45A1 Missense_Mutation p.P468T 0.62 tolerated(0.46) possibly_damaging(0.489) TCGA-53-7624-01 1 87033122 87033122 A G CLCA4 Missense_Mutation p.N324D 0.38 tolerated(0.4) benign(0.049) TCGA-53-7624-01 1 89658687 89658687 G T GBP4 Missense_Mutation p.D190E 0.17 deleterious(0.02) probably_damaging(0.973) TCGA-53-7624-01 1 92469992 92469992 G A BRDT Missense_Mutation p.D804N 0.24 tolerated(0.15) possibly_damaging(0.632) TCGA-53-7624-01 1 94471099 94471099 G T ABCA4 Silent p.G2015G 0.49 TCGA-53-7624-01 20 1099525 1099525 G T PSMF1 Missense_Mutation p.G37C 0.63 tolerated(1) benign(0.016) TCGA-53-7624-01 20 18491570 18491570 G T SEC23B Missense_Mutation p.A31S 0.63 tolerated(0.11) benign(0.222) TCGA-53-7624-01 20 23016571 23016571 C A SSTR4 Missense_Mutation p.P151T 0.68 deleterious(0) probably_damaging(0.976) TCGA-53-7624-01 20 24949666 24949666 C G APMAP Missense_Mutation p.M301I 0.65 deleterious(0.01) benign(0.004) TCGA-53-7624-01 20 30156040 30156040 G T HM13 Intron 0.35 TCGA-53-7624-01 20 30584330 30584330 C G XKR7 Silent p.L270L 0.29 TCGA-53-7624-01 20 30729627 30729627 G A TM9SF4 Missense_Mutation p.D153N 0.37 tolerated(0.45) benign(0.166) TCGA-53-7624-01 20 31624324 31624324 C T BPIFB6 Silent p.Y217Y 0.40 TCGA-53-7624-01 20 33509651 33509651 T A ACSS2 Silent p.G523G 0.42 TCGA-53-7624-01 20 44684847 44684847 C T SLC12A5 Missense_Mutation p.T972M 0.66 deleterious(0.02) benign(0.094) TCGA-53-7624-01 20 44684857 44684857 C A SLC12A5 Silent p.R975R 0.60 TCGA-53-7624-01 20 48600455 48600455 C T SNAI1 Silent p.L59L 0.30 TCGA-53-7624-01 20 49196459 49196459 G A PTPN1 Missense_Mutation p.E362K 0.36 tolerated(0.38) benign(0.079) TCGA-53-7624-01 20 50310550 50310550 G A ATP9A Silent p.A213A 0.08 TCGA-53-7624-01 20 54824346 54824346 G T MC3R Silent p.A149A 0.62 TCGA-53-7624-01 20 55758871 55758871 G C BMP7 Missense_Mutation p.R289G 0.67 deleterious(0) probably_damaging(0.999) TCGA-53-7624-01 20 58330341 58330341 G T PHACTR3 Nonsense_Mutation p.G155* 0.62 TCGA-53-7624-01 20 60927089 60927089 G A LAMA5 Missense_Mutation p.S245F 0.53 probably_damaging(0.928) TCGA-53-7624-01 20 62365069 62365069 G T ZGPAT Silent p.T283T 0.73 TCGA-53-7624-01 20 860413 860413 G A ANGPT4 Missense_Mutation p.R344W 0.65 deleterious(0) probably_damaging(0.999) TCGA-53-7624-01 21 10862916 10862916 G A IGHV1OR21-1 Missense_Mutation p.C71Y 0.20 tolerated(0.91) benign(0) TCGA-53-7624-01 21 10863033 10863033 C A IGHV1OR21-1 Missense_Mutation p.T110K 0.12 deleterious(0) possibly_damaging(0.469) TCGA-53-7624-01 21 28210819 28210819 C A ADAMTS1 Missense_Mutation p.G715C 0.21 deleterious(0) probably_damaging(0.996) TCGA-53-7624-01 21 30248748 30248748 C A N6AMT1 Missense_Mutation p.G202C 0.19 probably_damaging(0.928) TCGA-53-7624-01 21 30324587 30324587 C A LTN1 Splice_Site p.X1126_splice 0.58 TCGA-53-7624-01 21 40559157 40559157 G C BRWD1 Nonsense_Mutation p.S2253* 0.21 TCGA-53-7624-01 21 41648175 41648175 C A DSCAM Missense_Mutation p.Q735H 0.33 tolerated(1) probably_damaging(0.928) TCGA-53-7624-01 21 41725575 41725575 G C DSCAM Missense_Mutation p.H251D 0.58 tolerated(0.1) possibly_damaging(0.729) TCGA-53-7624-01 21 43510525 43510525 G T UMODL1 Missense_Mutation p.R303L 0.39 tolerated(0.31) benign(0.309) TCGA-53-7624-01 21 46032303 46032303 C G KRTAP10-8 Missense_Mutation p.P96A 0.19 tolerated(0.07) unknown(0) TCGA-53-7624-01 21 46074381 46074381 C T KRTAP12-4 Missense_Mutation p.G51R 0.15 tolerated(0.35) benign(0.245) TCGA-53-7624-01 21 47633658 47633658 T C LSS Missense_Mutation p.Y368C 0.25 deleterious(0.02) probably_damaging(0.994) TCGA-53-7624-01 22 16279209 16279209 C G POTEH Silent p.L338L 0.09 TCGA-53-7624-01 22 18029082 18029082 G T CECR2 Missense_Mutation p.A1348S 0.63 deleterious(0) benign(0.281) TCGA-53-7624-01 22 22556286 22556286 G A IGLV11-55 Missense_Mutation p.G34R 0.67 deleterious(0.01) possibly_damaging(0.896) TCGA-53-7624-01 22 26343761 26343761 G T MYO18B Missense_Mutation p.E1905D 0.76 tolerated(0.29) benign(0.018) TCGA-53-7624-01 22 32589345 32589345 G T RFPL2 Intron 0.76 TCGA-53-7624-01 22 38539223 38539223 C G PLA2G6 Missense_Mutation p.E166D 0.64 tolerated(0.16) benign(0.326) TCGA-53-7624-01 22 42565869 42565869 C A TCF20 Missense_Mutation p.R1928M 0.63 probably_damaging(0.999) TCGA-53-7624-01 22 49042485 49042485 G T FAM19A5 Silent p.R63R 0.74 TCGA-53-7624-01 22 50716346 50716346 C T PLXNB2 Missense_Mutation p.D1662N 0.71 deleterious(0) probably_damaging(1) TCGA-53-7624-01 2 108922022 108922022 A T SULT1C2 Missense_Mutation p.D261V 0.07 deleterious(0) probably_damaging(0.999) TCGA-53-7624-01 2 109513387 109513387 G A EDAR Silent p.A441A 0.43 TCGA-53-7624-01 2 113765460 113765460 C A IL36A Missense_Mutation p.L106I 0.44 deleterious(0.01) possibly_damaging(0.854) TCGA-53-7624-01 2 114253456 114253456 A G CBWD2 3'UTR 0.33 TCGA-53-7624-01 2 114369730 114369730 C A RPL23AP7 RNA 0.39 TCGA-53-7624-01 2 114512873 114512873 C A SLC35F5 Missense_Mutation p.V48L 0.44 tolerated_low_confidence(0.2) benign(0.003) TCGA-53-7624-01 2 120723117 120723117 G T PTPN4 Missense_Mutation p.W818C 0.43 deleterious(0) probably_damaging(1) TCGA-53-7624-01 2 120849190 120849190 A G EPB41L5 Missense_Mutation p.E368G 0.55 deleterious(0) probably_damaging(0.997) TCGA-53-7624-01 2 121747030 121747030 T C GLI2 Silent p.F1180F 0.48 TCGA-53-7624-01 2 128409443 128409443 G A GPR17 3'UTR 0.18 TCGA-53-7624-01 2 132238094 132238094 C G TUBA3D Missense_Mutation p.I276M 0.53 deleterious_low_confidence(0.02) probably_damaging(0.945) TCGA-53-7624-01 2 141092069 141092069 C A LRP1B Missense_Mutation p.G4059V 0.35 probably_damaging(0.988) TCGA-53-7624-01 2 141707947 141707947 T C LRP1B Missense_Mutation p.D998G 0.25 probably_damaging(0.973) TCGA-53-7624-01 2 148684648 148684648 G C ACVR2A Splice_Site p.X450_splice 0.60 TCGA-53-7624-01 2 1497681 1497683 TAC AA TPO Frame_Shift_Del p.Y626Kfs*14 0.20 TCGA-53-7624-01 2 152419190 152419190 A C NEB Missense_Mutation p.W6276G 0.61 probably_damaging(1) TCGA-53-7624-01 2 152483651 152483651 C T NEB Silent p.V3404V 0.21 TCGA-53-7624-01 2 152977148 152977148 T A STAM2 Silent p.T506T 0.08 TCGA-53-7624-01 2 163123618 163123618 C T IFIH1 3'UTR 0.19 TCGA-53-7624-01 2 1652105 1652105 C A PXDN Silent p.T1149T 0.49 TCGA-53-7624-01 2 166901764 166901764 G C SCN1A Missense_Mutation p.S484C 0.19 tolerated(0.06) probably_damaging(0.956) TCGA-53-7624-01 2 168096378 168096378 G T XIRP2 Missense_Mutation p.S291I 0.12 possibly_damaging(0.66) TCGA-53-7624-01 2 168106856 168106856 G C XIRP2 Missense_Mutation p.G2985A 0.55 benign(0.003) TCGA-53-7624-01 2 169764670 169764670 A G G6PC2 3'Flank 0.43 TCGA-53-7624-01 2 170493567 170493567 G A PPIG Missense_Mutation p.R600K 0.57 tolerated_low_confidence(0.15) unknown(0) TCGA-53-7624-01 2 170843259 170843259 G C UBR3 Missense_Mutation p.E1247Q 0.54 deleterious(0.02) probably_damaging(0.99) TCGA-53-7624-01 2 171818182 171818182 C T GORASP2 Missense_Mutation p.T278I 0.63 deleterious(0.02) possibly_damaging(0.701) TCGA-53-7624-01 2 176995548 176995548 C T HOXD8 Nonsense_Mutation p.Q152* 0.14 TCGA-53-7624-01 2 178985949 178985949 G A RBM45 Missense_Mutation p.R239Q 0.10 tolerated(0.14) possibly_damaging(0.457) TCGA-53-7624-01 2 179465865 179465865 C G TTN Missense_Mutation p.G18589A 0.59 TCGA-53-7624-01 2 179478506 179478506 T C TTN Missense_Mutation p.K16502E 0.40 TCGA-53-7624-01 2 179580249 179580249 G T TTN Missense_Mutation p.A8631D 0.57 TCGA-53-7624-01 2 179582299 179582299 A G TTN Silent p.A8434A 0.19 TCGA-53-7624-01 2 179592463 179592463 A T TTN Silent p.L6614L 0.50 TCGA-53-7624-01 2 179592877 179592877 T A TTN Silent p.V6558V 0.27 TCGA-53-7624-01 2 179597025 179597025 C A TTN Missense_Mutation p.K5557N 0.56 TCGA-53-7624-01 2 179614607 179614607 C A TTN Intron 0.55 TCGA-53-7624-01 2 180634376 180634376 C A ZNF385B Missense_Mutation p.C36F 0.58 deleterious(0) probably_damaging(0.999) TCGA-53-7624-01 2 186697850 186697850 C A FSIP2 Missense_Mutation p.S6963Y 0.50 probably_damaging(0.926) TCGA-53-7624-01 2 188349672 188349672 C A TFPI Missense_Mutation p.C134F 0.34 deleterious(0) probably_damaging(1) TCGA-53-7624-01 2 1893245 1893245 G T MYT1L Missense_Mutation p.P761H 0.20 tolerated(0.06) probably_damaging(0.992) TCGA-53-7624-01 2 189839205 189839205 G C COL3A1 5'UTR 0.17 TCGA-53-7624-01 2 189857637 189857637 G T COL3A1 Missense_Mutation p.A341S 0.41 unknown(0) TCGA-53-7624-01 2 189876603 189876603 T G COL3A1 3'UTR 0.40 TCGA-53-7624-01 2 189876604 189876604 A T COL3A1 3'UTR 0.44 TCGA-53-7624-01 2 190531351 190531351 G T ASNSD1 Nonsense_Mutation p.G165* 0.27 TCGA-53-7624-01 2 191301981 191301981 C T MFSD6 Missense_Mutation p.P409L 0.23 deleterious(0.02) benign(0.017) TCGA-53-7624-01 2 198953617 198953619 CCC TCCA PLCL1 Frame_Shift_Ins p.P919Sfs*20 0.15 TCGA-53-7624-01 2 201437170 201437170 G T SGOL2 Missense_Mutation p.V701F 0.56 deleterious(0) possibly_damaging(0.854) TCGA-53-7624-01 2 201719749 201719749 T C CLK1 Missense_Mutation p.Y415C 0.28 tolerated(0.08) possibly_damaging(0.9) TCGA-53-7624-01 2 202252561 202252561 C A TRAK2 Missense_Mutation p.V521F 0.30 tolerated(0.71) benign(0.005) TCGA-53-7624-01 2 202899768 202899768 C A FZD7 Missense_Mutation p.A133E 0.47 tolerated(0.09) benign(0.061) TCGA-53-7624-01 2 205989158 205989158 G T PARD3B Missense_Mutation p.G425C 0.30 deleterious(0) probably_damaging(1) TCGA-53-7624-01 2 206659563 206659563 G C NRP2 Silent p.L859L 0.39 TCGA-53-7624-01 2 211454898 211454898 G C CPS1 Missense_Mutation p.L266F 0.22 tolerated(1) benign(0.001) TCGA-53-7624-01 2 21250788 21250788 A G APOB Missense_Mutation p.I660T 0.56 possibly_damaging(0.739) TCGA-53-7624-01 2 212543796 212543796 A T ERBB4 Missense_Mutation p.S535T 0.35 tolerated(0.17) benign(0.004) TCGA-53-7624-01 2 215882824 215882824 C A ABCA12 Nonsense_Mutation p.E564* 0.31 TCGA-53-7624-01 2 217279531 217279531 G C SMARCAL1 Missense_Mutation p.R35T 0.26 tolerated_low_confidence(0.22) benign(0.008) TCGA-53-7624-01 2 218700815 218700815 C A TNS1 Missense_Mutation p.V918F 0.26 deleterious(0.02) possibly_damaging(0.466) TCGA-53-7624-01 2 218712609 218712609 G A TNS1 Silent p.S752S 0.09 TCGA-53-7624-01 2 220104940 220104940 G A GLB1L Silent p.H173H 0.47 TCGA-53-7624-01 2 220336995 220336995 G T SPEG Silent p.V1294V 0.58 TCGA-53-7624-01 2 225702528 225702528 G A DOCK10 Missense_Mutation p.A934V 0.19 deleterious(0.01) benign(0.24) TCGA-53-7624-01 2 227660091 227660091 C A IRS1 Missense_Mutation p.G1122W 0.42 deleterious_low_confidence(0.02) possibly_damaging(0.733) TCGA-53-7624-01 2 230312124 230312124 C A DNER Missense_Mutation p.C465F 0.28 deleterious(0) probably_damaging(1) TCGA-53-7624-01 2 230670446 230670446 T A TRIP12 Missense_Mutation p.S809C 0.36 tolerated(0.05) benign(0.155) TCGA-53-7624-01 2 231174703 231174703 G A SP140 Missense_Mutation p.C708Y 0.26 deleterious(0) probably_damaging(1) TCGA-53-7624-01 2 231973423 231973423 C T HTR2B Silent p.R418R 0.28 TCGA-53-7624-01 2 234072549 234072549 A C INPP5D Silent p.T467T 0.47 TCGA-53-7624-01 2 234343525 234343525 G C DGKD Silent p.T188T 0.23 TCGA-53-7624-01 2 234601751 234601751 A T UGT1A6 Missense_Mutation p.Q34L 0.47 tolerated(0.16) benign(0.015) TCGA-53-7624-01 2 234652317 234652317 G A UGT1A10 Intron 0.42 TCGA-53-7624-01 2 238280467 238280467 G A COL6A3 Missense_Mutation p.P1398L 0.23 probably_damaging(1) TCGA-53-7624-01 2 238289831 238289831 C T COL6A3 Missense_Mutation p.G542S 0.21 probably_damaging(1) TCGA-53-7624-01 2 238483618 238483618 C A RAB17 3'UTR 0.37 TCGA-53-7624-01 2 24480909 24480909 C G ITSN2 Missense_Mutation p.K912N 0.21 deleterious(0.03) unknown(0) TCGA-53-7624-01 2 25610209 25610209 C G DTNB Missense_Mutation p.A592P 0.43 deleterious(0) probably_damaging(0.998) TCGA-53-7624-01 2 27447744 27447744 G C CAD Missense_Mutation p.Q462H 0.37 deleterious(0.02) possibly_damaging(0.481) TCGA-53-7624-01 2 27448030 27448030 G T CAD Missense_Mutation p.E513D 0.33 deleterious(0) possibly_damaging(0.902) TCGA-53-7624-01 2 27670717 27670717 G A IFT172 Missense_Mutation p.H1501Y 0.41 tolerated(0.11) benign(0) TCGA-53-7624-01 2 27873054 27873054 G A GPN1 Missense_Mutation p.R385K 0.41 tolerated_low_confidence(0.18) benign(0.003) TCGA-53-7624-01 2 27887979 27887979 G A SLC4A1AP Missense_Mutation p.D280N 0.14 deleterious(0) possibly_damaging(0.874) TCGA-53-7624-01 2 30974067 30974067 C T CAPN13 Missense_Mutation p.E380K 0.15 tolerated(0.24) possibly_damaging(0.791) TCGA-53-7624-01 2 32735027 32735027 G C BIRC6 Silent p.L3401L 0.17 TCGA-53-7624-01 2 32774389 32774389 A T BIRC6 Missense_Mutation p.S4329C 0.36 probably_damaging(0.997) TCGA-53-7624-01 2 43800115 43800115 G T THADA Missense_Mutation p.F582L 0.53 tolerated(0.52) benign(0.003) TCGA-53-7624-01 2 46607448 46607448 G T EPAS1 Missense_Mutation p.C546F 0.27 tolerated(0.26) possibly_damaging(0.646) TCGA-53-7624-01 2 55529052 55529052 T G CCDC88A Missense_Mutation p.N1542T 0.21 tolerated(1) benign(0.197) TCGA-53-7624-01 2 60688270 60688270 C A BCL11A Nonsense_Mutation p.E593* 0.43 TCGA-53-7624-01 2 63280223 63280223 G T OTX1 Splice_Site p.X33_splice 0.47 TCGA-53-7624-01 2 63631499 63631499 T A WDPCP Missense_Mutation p.L373F 0.30 deleterious(0.03) benign(0.443) TCGA-53-7624-01 2 66796210 66796210 G T MEIS1 Missense_Mutation p.M381I 0.13 deleterious(0.01) benign(0.027) TCGA-53-7624-01 2 74690480 74690480 G C MOGS Missense_Mutation p.L205V 0.25 tolerated(0.11) benign(0.26) TCGA-53-7624-01 2 79385792 79385792 G T REG3A Silent p.S60S 0.29 TCGA-53-7624-01 2 79385793 79385793 G T REG3A Missense_Mutation p.S60Y 0.30 deleterious(0) probably_damaging(0.994) TCGA-53-7624-01 2 80136857 80136857 G T CTNNA2 Missense_Mutation p.R330S 0.13 deleterious(0) benign(0.426) TCGA-53-7624-01 2 89185509 89185509 A T IGKV4-1 Missense_Mutation p.Q68L 0.42 deleterious(0) probably_damaging(0.941) TCGA-53-7624-01 2 89399393 89399393 C A IGKV1-16 Missense_Mutation p.D104Y 0.37 deleterious(0.01) possibly_damaging(0.728) TCGA-53-7624-01 2 90121684 90121684 C - IGKV1D-17 Frame_Shift_Del p.L10Wfs*17 0.29 TCGA-53-7624-01 2 9614744 9614744 C T IAH1 Missense_Mutation p.R17C 0.45 deleterious(0) possibly_damaging(0.8) TCGA-53-7624-01 2 96967427 96967427 C T SNRNP200 Missense_Mutation p.D137N 0.14 deleterious(0.02) possibly_damaging(0.456) TCGA-53-7624-01 3 108127253 108127253 T A MYH15 Splice_Site p.X1519_splice 0.68 TCGA-53-7624-01 3 112288109 112288109 A T SLC35A5 Silent p.I74I 0.05 TCGA-53-7624-01 3 119536150 119536150 A G NR1I2 3'UTR 0.31 TCGA-53-7624-01 3 121341645 121341645 G C FBXO40 Missense_Mutation p.V457L 0.13 tolerated(0.84) benign(0.02) TCGA-53-7624-01 3 122634696 122634696 C A SEMA5B Missense_Mutation p.G631V 0.52 tolerated(0.3) benign(0.042) TCGA-53-7624-01 3 122942427 122942427 G T SEC22A Silent p.V68V 0.39 TCGA-53-7624-01 3 124646580 124646580 C A MUC13 Missense_Mutation p.D104Y 0.25 tolerated(0.07) benign(0.144) TCGA-53-7624-01 3 124909291 124909291 C A SLC12A8 Missense_Mutation p.W42C 0.48 deleterious(0) probably_damaging(1) TCGA-53-7624-01 3 125877290 125877290 G C ALDH1L1 Missense_Mutation p.P117R 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-53-7624-01 3 126180669 126180669 C A ZXDC Silent p.L612L 0.38 TCGA-53-7624-01 3 127702968 127702969 - T KBTBD12 Frame_Shift_Ins p.L574Ffs*21 0.18 TCGA-53-7624-01 3 127842454 127842454 C T RUVBL1 Silent p.G38G 0.14 TCGA-53-7624-01 3 128200003 128200003 A T GATA2 Silent p.A434A 0.32 TCGA-53-7624-01 3 128971504 128971504 C T COPG1 Silent p.F70F 0.56 TCGA-53-7624-01 3 133497491 133497491 G - TF 3'UTR 0.33 TCGA-53-7624-01 3 139092570 139092570 C A COPB2 Missense_Mutation p.A278S 0.13 tolerated(0.55) benign(0.003) TCGA-53-7624-01 3 139092571 139092571 C A COPB2 Silent p.V277V 0.13 TCGA-53-7624-01 3 140866224 140866224 C A SPSB4 3'UTR 0.45 TCGA-53-7624-01 3 141724290 141724290 G A TFDP2 Missense_Mutation p.P60L 0.10 tolerated(0.07) possibly_damaging(0.794) TCGA-53-7624-01 3 145803125 145803125 T C PLOD2 Intron 0.38 TCGA-53-7624-01 3 150377692 150377692 T C FAM194A Missense_Mutation p.N660S 0.21 deleterious(0.01) possibly_damaging(0.886) TCGA-53-7624-01 3 151055595 151055595 G C P2RY12 3'UTR 0.21 TCGA-53-7624-01 3 155200325 155200325 G C PLCH1 Missense_Mutation p.L1172V 0.21 deleterious_low_confidence(0.03) benign(0.019) TCGA-53-7624-01 3 155838505 155838505 C A KCNAB1 Silent p.P35P 0.40 TCGA-53-7624-01 3 160142658 160142658 A T SMC4 Missense_Mutation p.N777Y 0.16 deleterious(0.03) benign(0.04) TCGA-53-7624-01 3 164776753 164776753 C G SI Missense_Mutation p.E466Q 0.42 tolerated(0.25) benign(0.029) TCGA-53-7624-01 3 164906085 164906085 C T SLITRK3 Missense_Mutation p.G845E 0.39 tolerated_low_confidence(0.28) probably_damaging(0.972) TCGA-53-7624-01 3 164908202 164908202 G T SLITRK3 Silent p.V139V 0.39 TCGA-53-7624-01 3 179336219 179336219 G T NDUFB5 Missense_Mutation p.W120L 0.38 deleterious(0.05) possibly_damaging(0.531) TCGA-53-7624-01 3 183017790 183017791 - T MCF2L2 Intron 0.24 TCGA-53-7624-01 3 19295208 19295208 G A KCNH8 Missense_Mutation p.D47N 0.67 deleterious(0) probably_damaging(0.999) TCGA-53-7624-01 3 193039554 193039554 C A ATP13A5 Missense_Mutation p.A611S 0.41 tolerated(0.18) benign(0.102) TCGA-53-7624-01 3 195711057 195711057 C A SDHAP1 RNA 0.28 TCGA-53-7624-01 3 196387121 196387121 G T NRROS Missense_Mutation p.G203C 0.45 deleterious(0) probably_damaging(0.966) TCGA-53-7624-01 3 20212684 20212684 C A SGOL1 Silent p.L441L 0.60 TCGA-53-7624-01 3 29941231 29941231 C T RBMS3 Silent p.Y308Y 0.19 TCGA-53-7624-01 3 33414644 33414644 C A FBXL2 Silent p.I117I 0.26 TCGA-53-7624-01 3 386319 386319 G A CHL1 Missense_Mutation p.E259K 0.22 tolerated_low_confidence(0.1) benign(0.209) TCGA-53-7624-01 3 38888706 38888706 C A SCN11A Missense_Mutation p.G1619C 0.66 tolerated(0.4) benign(0.037) TCGA-53-7624-01 3 44611533 44611533 A G ZKSCAN7 Missense_Mutation p.T311A 0.33 tolerated(1) benign(0.001) TCGA-53-7624-01 3 46450106 46450106 A T CCRL2 Missense_Mutation p.Y191F 0.61 tolerated(0.69) possibly_damaging(0.576) TCGA-53-7624-01 3 47087991 47087991 G C SETD2 Missense_Mutation p.Q2362E 0.59 deleterious(0.03) benign(0.159) TCGA-53-7624-01 3 47162747 47162747 G C SETD2 Missense_Mutation p.Q1127E 0.68 tolerated_low_confidence(0.07) benign(0.07) TCGA-53-7624-01 3 47164495 47164495 G A SETD2 Missense_Mutation p.S544L 0.58 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-53-7624-01 3 47449257 47449257 C T PTPN23 Silent p.A358A 0.15 TCGA-53-7624-01 3 50329919 50329919 G C IFRD2 5'Flank 0.13 TCGA-53-7624-01 3 50332763 50332763 G A HYAL3 Missense_Mutation p.H91Y 0.31 tolerated(0.97) benign(0.098) TCGA-53-7624-01 3 50334259 50334259 G A NAT6 Silent p.F234F 0.28 TCGA-53-7624-01 3 50338079 50338079 G A HYAL1 Silent p.L381L 0.28 TCGA-53-7624-01 3 50340020 50340020 G C HYAL1 Nonsense_Mutation p.S123* 0.27 TCGA-53-7624-01 3 51708310 51708310 G C TEX264 5'UTR 0.50 TCGA-53-7624-01 3 52283052 52283052 C T PPM1M Silent p.L141L 0.43 TCGA-53-7624-01 3 52514220 52514220 C T NISCH Silent p.L479L 0.24 TCGA-53-7624-01 3 57283510 57283510 C T APPL1 Missense_Mutation p.S329L 0.66 deleterious(0.01) benign(0.05) TCGA-53-7624-01 3 58849595 58849595 C T C3orf67 Missense_Mutation p.A303T 0.14 tolerated(0.39) benign(0.006) TCGA-53-7624-01 3 62631519 62631519 C A CADPS Splice_Site p.X402_splice 0.66 TCGA-53-7624-01 3 65367577 65367577 C A MAGI1 Silent p.T892T 0.38 TCGA-53-7624-01 3 68587908 68587908 C A FAM19A1 Silent p.A87A 0.61 TCGA-53-7624-01 3 7494450 7494450 G C GRM7 Missense_Mutation p.G444A 0.85 deleterious(0.02) benign(0.335) TCGA-53-7624-01 3 77666678 77666678 G T ROBO2 Missense_Mutation p.S1119I 0.69 tolerated(0.18) benign(0.004) TCGA-53-7624-01 3 77693963 77693963 T A ROBO2 Missense_Mutation p.V1364E 0.61 tolerated_low_confidence(0.1) benign(0.403) TCGA-53-7624-01 3 78649295 78649295 C T ROBO1 Missense_Mutation p.E1637K 0.30 tolerated_low_confidence(0.15) unknown(0) TCGA-53-7624-01 4 100137346 100137346 G T ADH6 Missense_Mutation p.P31Q 0.46 deleterious(0) probably_damaging(1) TCGA-53-7624-01 4 100232027 100232027 A G ADH1B Missense_Mutation p.V333A 0.20 deleterious(0.01) possibly_damaging(0.643) TCGA-53-7624-01 4 100235240 100235240 T A ADH1B Splice_Site p.X190_splice 0.18 TCGA-53-7624-01 4 10090303 10090303 G A WDR1 Silent p.A207A 0.50 TCGA-53-7624-01 4 119220095 119220095 T A PRSS12 Splice_Site p.X544_splice 0.80 TCGA-53-7624-01 4 123145791 123145791 G T KIAA1109 Missense_Mutation p.V918L 0.67 benign(0.003) TCGA-53-7624-01 4 126411339 126411339 A G FAT4 Silent p.P4454P 0.73 TCGA-53-7624-01 4 140196473 140196473 T A MGARP Silent p.V52V 0.70 TCGA-53-7624-01 4 156136063 156136063 C A NPY2R Silent p.L324L 0.36 TCGA-53-7624-01 4 158281217 158281217 C A GRIA2 Missense_Mutation p.P738H 0.33 deleterious(0) probably_damaging(1) TCGA-53-7624-01 4 158281226 158281226 C A GRIA2 Missense_Mutation p.T741N 0.33 deleterious(0) probably_damaging(1) TCGA-53-7624-01 4 158281227 158281227 C A GRIA2 Silent p.T741T 0.30 TCGA-53-7624-01 4 16900200 16900200 G T LDB2 5'UTR 0.64 TCGA-53-7624-01 4 170618416 170618416 C A CLCN3 Missense_Mutation p.S365Y 0.59 tolerated(0.21) probably_damaging(0.994) TCGA-53-7624-01 4 175636719 175636719 A T GLRA3 Nonsense_Mutation p.L165* 0.71 TCGA-53-7624-01 4 177605168 177605168 C A VEGFC Missense_Mutation p.R391L 0.54 deleterious(0.03) possibly_damaging(0.816) TCGA-53-7624-01 4 183594332 183594332 G T TENM3 Missense_Mutation p.G429V 0.55 tolerated(0.05) probably_damaging(0.953) TCGA-53-7624-01 4 190881953 190881953 A G FRG1 Silent p.E196E 0.38 TCGA-53-7624-01 4 25671380 25671380 G T SLC34A2 Silent p.V249V 0.43 TCGA-53-7624-01 4 289840 289841 GT A ZNF732 Frame_Shift_Del p.N36Ifs*5 0.29 TCGA-53-7624-01 4 30724316 30724316 C A PCDH7 Silent p.P424P 0.10 TCGA-53-7624-01 4 3478183 3478183 C A DOK7 Missense_Mutation p.T149K 0.39 deleterious(0.02) benign(0.032) TCGA-53-7624-01 4 36093643 36093643 C A ARAP2 Splice_Site p.X1429_splice 0.34 TCGA-53-7624-01 4 39219657 39219657 G A WDR19 Missense_Mutation p.A471T 0.20 tolerated(0.56) benign(0.002) TCGA-53-7624-01 4 39325005 39325005 A - RFC1 Frame_Shift_Del p.F225Lfs*5 0.26 TCGA-53-7624-01 4 39478734 39478734 A T LIAS Nonstop_Mutation p.*373Lext*15 0.34 TCGA-53-7624-01 4 39506950 39506950 C T UGDH Missense_Mutation p.E360K 0.13 deleterious(0) probably_damaging(1) TCGA-53-7624-01 4 40045152 40045152 A G RP11-333E13.4 RNA 0.25 TCGA-53-7624-01 4 41750440 41750440 C - PHOX2B Frame_Shift_Del p.G63Dfs*71 0.27 TCGA-53-7624-01 4 46967191 46967191 C A GABRA4 Missense_Mutation p.L310F 0.36 deleterious(0.02) probably_damaging(1) TCGA-53-7624-01 4 47033534 47033534 G C GABRB1 5'UTR 0.40 TCGA-53-7624-01 4 48076000 48076000 C G TXK Missense_Mutation p.V437L 0.30 deleterious(0) probably_damaging(0.998) TCGA-53-7624-01 4 48140816 48140816 T A TEC Missense_Mutation p.T560S 0.43 tolerated(0.89) benign(0.116) TCGA-53-7624-01 4 52860459 52860459 T C LRRC66 3'UTR 0.40 TCGA-53-7624-01 4 52917890 52917890 G A SPATA18 Missense_Mutation p.R7K 0.14 tolerated(0.57) benign(0.006) TCGA-53-7624-01 4 56819337 56819337 T A CEP135 Missense_Mutation p.V67D 0.19 deleterious(0) possibly_damaging(0.452) TCGA-53-7624-01 4 619521 619521 T A PDE6B Missense_Mutation p.C36S 0.39 tolerated(0.44) benign(0) TCGA-53-7624-01 4 6596438 6596438 G T MAN2B2 Missense_Mutation p.D346Y 0.38 deleterious(0) probably_damaging(0.982) TCGA-53-7624-01 4 6642817 6642817 G C MRFAP1 Missense_Mutation p.E76D 0.28 tolerated(0.28) benign(0.009) TCGA-53-7624-01 4 68610423 68610423 A G GNRHR Missense_Mutation p.F202S 0.22 deleterious(0) probably_damaging(0.986) TCGA-53-7624-01 4 6863978 6863978 C G KIAA0232 Silent p.L623L 0.23 TCGA-53-7624-01 4 70346572 70346572 G A UGT2B4 Missense_Mutation p.P456L 0.33 deleterious(0) probably_damaging(0.994) TCGA-53-7624-01 4 70505055 70505055 G T UGT2A2 Missense_Mutation p.L102M 0.20 tolerated(0.21) benign(0.248) TCGA-53-7624-01 4 70505056 70505056 C T UGT2A2 Missense_Mutation p.M101I 0.20 tolerated(0.28) benign(0.003) TCGA-53-7624-01 4 71201058 71201058 G C CABS1 Missense_Mutation p.G101A 0.51 deleterious(0.04) benign(0.237) TCGA-53-7624-01 4 74357791 74357791 C A AFM Missense_Mutation p.T349N 0.41 tolerated(0.53) benign(0.004) TCGA-53-7624-01 4 76782042 76782042 G C PPEF2 Silent p.T680T 0.41 TCGA-53-7624-01 4 8226929 8226929 A T SH3TC1 Missense_Mutation p.Q424L 0.29 tolerated(0.09) possibly_damaging(0.479) TCGA-53-7624-01 4 83800020 83800020 G T SEC31A Missense_Mutation p.L89M 0.18 deleterious(0) probably_damaging(0.99) TCGA-53-7624-01 4 89183819 89183819 C A PPM1K Missense_Mutation p.W349C 0.36 deleterious(0) probably_damaging(1) TCGA-53-7624-01 4 89410315 89410315 A G HERC5 Splice_Site p.X655_splice 0.23 TCGA-53-7624-01 4 94411926 94411926 C A GRID2 Silent p.I665I 0.28 TCGA-53-7624-01 4 99027175 99027175 C A STPG2 Missense_Mutation p.D181Y 0.26 deleterious(0) probably_damaging(0.983) TCGA-53-7624-01 5 102891788 102891788 G A NUDT12 Nonsense_Mutation p.Q270* 0.33 TCGA-53-7624-01 5 115336320 115336320 G T AQPEP Missense_Mutation p.A538S 0.67 deleterious(0.01) probably_damaging(0.993) TCGA-53-7624-01 5 127644940 127644940 T A FBN2 Silent p.T1784T 0.30 TCGA-53-7624-01 5 127873104 127873104 C T FBN2 Missense_Mutation p.E65K 0.41 tolerated(0.88) unknown(0) TCGA-53-7624-01 5 128302220 128302220 C T SLC27A6 Silent p.C130C 0.72 TCGA-53-7624-01 5 131329810 131329810 C A ACSL6 Missense_Mutation p.A62S 0.83 deleterious(0.01) benign(0.358) TCGA-53-7624-01 5 135567188 135567188 C A TRPC7 Nonsense_Mutation p.E632* 0.22 TCGA-53-7624-01 5 136448183 136448183 A C SPOCK1 Missense_Mutation p.C139G 0.62 deleterious(0) probably_damaging(0.998) TCGA-53-7624-01 5 140188374 140188374 G A PCDHA4 Silent p.Q534Q 0.63 TCGA-53-7624-01 5 140627360 140627360 C T PCDHB15 Silent p.D738D 0.31 TCGA-53-7624-01 5 140745615 140745615 C A PCDHGA5 Missense_Mutation p.T573K 0.68 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-53-7624-01 5 140754224 140754224 C A PCDHGA6 Missense_Mutation p.P192T 0.64 deleterious_low_confidence(0.01) possibly_damaging(0.903) TCGA-53-7624-01 5 140774104 140774104 T G PCDHGA8 Missense_Mutation p.V575G 0.47 deleterious_low_confidence(0) benign(0.192) TCGA-53-7624-01 5 140812477 140812477 G T PCDHGA12 Silent p.R717R 0.04 TCGA-53-7624-01 5 149276050 149276050 C A PDE6A Missense_Mutation p.D497Y 0.63 deleterious(0.01) possibly_damaging(0.751) TCGA-53-7624-01 5 150844126 150844126 G T SLC36A1 Missense_Mutation p.G96C 0.60 tolerated(0.07) possibly_damaging(0.563) TCGA-53-7624-01 5 150911376 150911376 G T FAT2 Missense_Mutation p.P3195T 0.63 probably_damaging(1) TCGA-53-7624-01 5 150923793 150923793 G T FAT2 Missense_Mutation p.Q2299K 0.59 benign(0.006) TCGA-53-7624-01 5 151772002 151772002 C A NMUR2 Missense_Mutation p.R333L 0.76 deleterious(0) probably_damaging(0.999) TCGA-53-7624-01 5 155935677 155935677 C T SGCD Nonsense_Mutation p.Q87* 0.64 TCGA-53-7624-01 5 162940624 162940624 G T MAT2B Missense_Mutation p.A108S 0.53 tolerated(0.08) benign(0.058) TCGA-53-7624-01 5 16481131 16481131 G A FAM134B Silent p.L219L 0.22 TCGA-53-7624-01 5 168310292 168310292 C A SLIT3 Missense_Mutation p.G155C 0.55 deleterious(0) probably_damaging(1) TCGA-53-7624-01 5 175528064 175528064 C T FAM153B Silent p.L116L 0.29 TCGA-53-7624-01 5 176304927 176304927 C A UNC5A Silent p.S556S 0.65 TCGA-53-7624-01 5 176304928 176304928 C A UNC5A Missense_Mutation p.H557N 0.65 tolerated(0.54) benign(0.021) TCGA-53-7624-01 5 176638389 176638389 G T NSD1 Missense_Mutation p.G997C 0.67 deleterious_low_confidence(0) possibly_damaging(0.56) TCGA-53-7624-01 5 178552058 178552058 G T ADAMTS2 Missense_Mutation p.H958Q 0.60 tolerated(0.11) possibly_damaging(0.904) TCGA-53-7624-01 5 179320253 179320253 C A TBC1D9B Silent p.L264L 0.66 TCGA-53-7624-01 5 19839086 19839086 T A CDH18 Missense_Mutation p.T4S 0.38 tolerated_low_confidence(1) benign(0) TCGA-53-7624-01 5 23509619 23509619 A G PRDM9 Missense_Mutation p.K37R 0.42 deleterious_low_confidence(0.04) benign(0.252) TCGA-53-7624-01 5 24491783 24491783 C T CDH10 Missense_Mutation p.G593D 0.37 deleterious(0.01) probably_damaging(0.992) TCGA-53-7624-01 5 2755283 2755283 G A C5orf38 3'UTR 0.31 TCGA-53-7624-01 5 33616027 33616027 T C ADAMTS12 Missense_Mutation p.Y765C 0.34 deleterious(0) probably_damaging(0.996) TCGA-53-7624-01 5 35712983 35712983 G C SPEF2 Missense_Mutation p.R970T 0.13 tolerated(0.27) benign(0.212) TCGA-53-7624-01 5 35873614 35873614 C A IL7R Silent p.L190L 0.29 TCGA-53-7624-01 5 35904575 35904575 T C CAPSL 3'UTR 0.33 TCGA-53-7624-01 5 40853054 40853054 G C CARD6 Missense_Mutation p.W540C 0.34 deleterious(0.02) benign(0.031) TCGA-53-7624-01 5 41176625 41176625 C G C6 Missense_Mutation p.V374L 0.30 tolerated(0.48) benign(0.048) TCGA-53-7624-01 5 41929992 41929992 G T FBXO4 Missense_Mutation p.A207S 0.35 tolerated(0.18) probably_damaging(0.955) TCGA-53-7624-01 5 45262169 45262169 G T HCN1 Silent p.R843R 0.40 TCGA-53-7624-01 5 5182283 5182283 G A ADAMTS16 Missense_Mutation p.E210K 0.19 tolerated(0.08) benign(0.015) TCGA-53-7624-01 5 52778750 52778750 C A FST Nonsense_Mutation p.C42* 0.78 TCGA-53-7624-01 5 59899305 59899305 C T DEPDC1B Silent p.L385L 0.29 TCGA-53-7624-01 5 67575537 67575537 A T PIK3R1 Missense_Mutation p.S204C 0.55 deleterious(0.04) benign(0.088) TCGA-53-7624-01 5 78251159 78251159 C T ARSB Missense_Mutation p.S286N 0.70 tolerated(0.15) benign(0.001) TCGA-53-7624-01 5 89981693 89981693 C A GPR98 Missense_Mutation p.A2124E 0.45 probably_damaging(0.981) TCGA-53-7624-01 6 100901721 100901721 C A SIM1 Splice_Site p.X59_splice 0.26 TCGA-53-7624-01 6 102503233 102503233 A T GRIK2 Silent p.I780I 0.18 TCGA-53-7624-01 6 111678278 111678278 C T REV3L Missense_Mutation p.E2375K 0.24 deleterious(0.04) possibly_damaging(0.641) TCGA-53-7624-01 6 117086410 117086410 G T FAM162B Missense_Mutation p.H61N 0.59 deleterious(0.04) probably_damaging(0.936) TCGA-53-7624-01 6 117589524 117589524 C A VGLL2 Silent p.L87L 0.43 TCGA-53-7624-01 6 118635284 118635284 G C SLC35F1 Missense_Mutation p.V366L 0.43 tolerated(0.12) benign(0.18) TCGA-53-7624-01 6 125144511 125144511 C A NKAIN2 3'UTR 0.56 TCGA-53-7624-01 6 129618930 129618930 G T LAMA2 Missense_Mutation p.W986L 0.41 tolerated(0.57) benign(0.216) TCGA-53-7624-01 6 129963071 129963074 GAAT AAA ARHGAP18 Frame_Shift_Del p.D68Vfs*13 0.19 TCGA-53-7624-01 6 132189200 132189200 C G ENPP1 Missense_Mutation p.L403V 0.35 deleterious(0.02) probably_damaging(0.976) TCGA-53-7624-01 6 133595853 133595853 G T EYA4 Splice_Site 0.27 TCGA-53-7624-01 6 1395050 1395050 C G FOXF2 Missense_Mutation p.H431D 0.69 deleterious(0) possibly_damaging(0.507) TCGA-53-7624-01 6 150322312 150322312 C A RAET1K RNA 0.47 TCGA-53-7624-01 6 151939103 151939103 G T CCDC170 Missense_Mutation p.V657L 0.12 deleterious(0.01) benign(0.071) TCGA-53-7624-01 6 152497696 152497696 C G SYNE1 Splice_Site p.X7821_splice 0.49 TCGA-53-7624-01 6 152762389 152762390 - A SYNE1 Frame_Shift_Ins p.W1342Lfs*5 0.25 TCGA-53-7624-01 6 152774714 152774714 G T SYNE1 Intron 0.32 TCGA-53-7624-01 6 155503374 155503374 G C TIAM2 Missense_Mutation p.A908P 0.20 deleterious(0.03) possibly_damaging(0.898) TCGA-53-7624-01 6 161007593 161007593 G A LPA Silent p.P1339P 0.43 TCGA-53-7624-01 6 161502033 161502033 A G MAP3K4 Missense_Mutation p.I740V 0.50 tolerated(0.06) probably_damaging(0.992) TCGA-53-7624-01 6 163149307 163149307 C G PACRG Missense_Mutation p.P14A 0.30 tolerated_low_confidence(0.54) benign(0.024) TCGA-53-7624-01 6 165711487 165711487 G T C6orf118 Missense_Mutation p.A347E 0.49 tolerated(0.14) benign(0.212) TCGA-53-7624-01 6 170632311 170632311 C A FAM120B Missense_Mutation p.Q627K 0.13 deleterious(0) probably_damaging(0.995) TCGA-53-7624-01 6 26124734 26124734 G A HIST1H2AC Missense_Mutation p.E92K 0.73 deleterious_low_confidence(0) benign(0.166) TCGA-53-7624-01 6 26199914 26199914 A T HIST1H2BF Missense_Mutation p.Y43F 0.73 deleterious_low_confidence(0.01) benign(0.066) TCGA-53-7624-01 6 31603433 31603433 G A PRRC2A Silent p.L1816L 0.10 TCGA-53-7624-01 6 31604910 31604910 G A PRRC2A Missense_Mutation p.G2080E 0.16 unknown(0) TCGA-53-7624-01 6 33141678 33141678 C T COL11A2 Missense_Mutation p.R766Q 0.74 benign(0.417) TCGA-53-7624-01 6 33255144 33255144 G C WDR46 Silent p.L289L 0.67 TCGA-53-7624-01 6 33287334 33287334 G T DAXX Missense_Mutation p.S588Y 0.23 deleterious(0) probably_damaging(0.995) TCGA-53-7624-01 6 33653453 33653453 C G ITPR3 Nonsense_Mutation p.S1839* 0.24 TCGA-53-7624-01 6 36742827 36742827 G C CPNE5 Missense_Mutation p.H216Q 0.70 deleterious(0) probably_damaging(0.957) TCGA-53-7624-01 6 38998201 38998201 C G DNAH8 3'UTR 0.15 TCGA-53-7624-01 6 39895315 39895315 C T MOCS1 Translation_Start_Site p.M1? 0.24 tolerated_low_confidence(1) benign(0.008) TCGA-53-7624-01 6 40996215 40996215 G A UNC5CL Missense_Mutation p.S485F 0.51 deleterious(0.02) probably_damaging(0.948) TCGA-53-7624-01 6 42796933 42796933 C G GLTSCR1L Missense_Mutation p.Q288E 0.21 deleterious(0.04) probably_damaging(0.99) TCGA-53-7624-01 6 42797513 42797513 C G GLTSCR1L Missense_Mutation p.S481C 0.18 tolerated(0.06) possibly_damaging(0.896) TCGA-53-7624-01 6 43471128 43471128 C T TJAP1 Intron 0.81 TCGA-53-7624-01 6 4892436 4892436 G T CDYL Missense_Mutation p.G172C 0.81 deleterious(0.02) possibly_damaging(0.58) TCGA-53-7624-01 6 51889828 51889828 C T PKHD1 Missense_Mutation p.E1594K 0.20 tolerated(0.22) benign(0.068) TCGA-53-7624-01 6 64408185 64408185 C T PHF3 Missense_Mutation p.S918F 0.37 deleterious(0.01) benign(0.219) TCGA-53-7624-01 6 70071174 70071174 C G BAI3 Missense_Mutation p.H1337D 0.19 tolerated(0.12) benign(0.042) TCGA-53-7624-01 6 73110196 73110196 A G RIMS1 Splice_Site p.X1621_splice 0.20 TCGA-53-7624-01 6 74104725 74104725 G A DDX43 Missense_Mutation p.E33K 0.46 tolerated_low_confidence(0.06) benign(0.016) TCGA-53-7624-01 6 74124360 74124360 C T DDX43 Missense_Mutation p.R566W 0.37 tolerated(0.07) benign(0.381) TCGA-53-7624-01 6 75861710 75861710 C A COL12A1 Missense_Mutation p.R1291S 0.37 benign(0.079) TCGA-53-7624-01 6 76734955 76734955 T A IMPG1 Missense_Mutation p.E173V 0.27 deleterious(0.04) benign(0.025) TCGA-53-7624-01 6 76734956 76734956 C G IMPG1 Missense_Mutation p.E173Q 0.27 deleterious(0.04) benign(0.312) TCGA-53-7624-01 6 83898411 83898411 C G PGM3 Missense_Mutation p.R132T 0.11 tolerated(0.61) benign(0.004) TCGA-53-7624-01 6 90405582 90405582 C A MDN1 Missense_Mutation p.Q3171H 0.29 benign(0.005) TCGA-53-7624-01 6 90642332 90642332 G T BACH2 Missense_Mutation p.A774E 0.27 tolerated(1) benign(0.056) TCGA-53-7624-01 6 99958050 99958050 C A USP45 Missense_Mutation p.R16I 0.19 deleterious(0) probably_damaging(0.966) TCGA-53-7624-01 7 103338532 103338532 G T RELN Missense_Mutation p.S304Y 0.60 deleterious(0.01) probably_damaging(0.991) TCGA-53-7624-01 7 11418961 11418961 T A THSD7A Intron 0.42 TCGA-53-7624-01 7 123097558 123097558 G T IQUB Nonsense_Mutation p.C690* 0.72 TCGA-53-7624-01 7 135272330 135272330 A T NUP205 Missense_Mutation p.Q409L 0.50 deleterious(0) possibly_damaging(0.9) TCGA-53-7624-01 7 140434289 140434289 C T BRAF 3'UTR 0.35 TCGA-53-7624-01 7 142494284 142494284 G A TRBJ2-2 Silent p.L14L 0.76 TCGA-53-7624-01 7 150746307 150746307 C T ASIC3 Missense_Mutation p.S112F 0.22 deleterious(0.04) benign(0.382) TCGA-53-7624-01 7 151970801 151970801 G T KMT2C Missense_Mutation p.A334D 0.05 probably_damaging(0.999) TCGA-53-7624-01 7 16317786 16317786 G C ISPD Missense_Mutation p.L301V 0.27 tolerated(0.13) benign(0.023) TCGA-53-7624-01 7 21760398 21760398 G T DNAH11 Missense_Mutation p.S2404I 0.40 probably_damaging(0.962) TCGA-53-7624-01 7 27168988 27168988 G T HOXA4 Missense_Mutation p.D273E 0.31 deleterious(0) benign(0.192) TCGA-53-7624-01 7 2752151 2752151 C T AMZ1 Missense_Mutation p.S379L 0.26 tolerated(0.32) benign(0) TCGA-53-7624-01 7 31864532 31864532 G A PDE1C Missense_Mutation p.P512L 0.45 deleterious(0.01) probably_damaging(1) TCGA-53-7624-01 7 36460353 36460353 G T ANLN Missense_Mutation p.Q721H 0.39 tolerated(0.07) probably_damaging(0.991) TCGA-53-7624-01 7 43484422 43484422 G A HECW1 Missense_Mutation p.G551R 0.39 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-53-7624-01 7 44746964 44746964 G A OGDH Missense_Mutation p.V925M 0.44 deleterious(0) possibly_damaging(0.779) TCGA-53-7624-01 7 47930312 47930312 C G PKD1L1 Missense_Mutation p.D835H 0.28 tolerated(0.21) benign(0.012) TCGA-53-7624-01 7 51096499 51096499 C A COBL Missense_Mutation p.G765V 0.14 deleterious(0.02) probably_damaging(0.965) TCGA-53-7624-01 7 5167301 5167301 C G ZNF890P RNA 0.21 TCGA-53-7624-01 7 5410646 5410646 T A TNRC18 Silent p.A1193A 0.43 TCGA-53-7624-01 7 56125754 56125754 C T CCT6A Missense_Mutation p.A228V 0.44 tolerated(0.13) benign(0.033) TCGA-53-7624-01 7 72663973 72663973 G A GTF2IRD2P1 RNA 0.55 TCGA-53-7624-01 7 74169854 74169854 C A GTF2I Missense_Mutation p.L947I 0.12 deleterious(0.02) possibly_damaging(0.895) TCGA-53-7624-01 7 7545662 7545662 C T COL28A1 Missense_Mutation p.G337R 0.30 deleterious(0) probably_damaging(1) TCGA-53-7624-01 7 82784308 82784308 G A PCLO Missense_Mutation p.S550L 0.63 benign(0.051) TCGA-53-7624-01 7 83823811 83823811 C T SEMA3A Missense_Mutation p.R31K 0.61 deleterious(0.01) benign(0.011) TCGA-53-7624-01 7 86541468 86541468 A C KIAA1324L Missense_Mutation p.S697A 0.17 tolerated(0.11) benign(0.098) TCGA-53-7624-01 7 86541474 86541474 C A KIAA1324L Missense_Mutation p.V695L 0.16 tolerated(0.29) benign(0.06) TCGA-53-7624-01 7 86541497 86541497 T C KIAA1324L Missense_Mutation p.Y687C 0.14 deleterious(0) probably_damaging(0.967) TCGA-53-7624-01 7 90012371 90012371 G A GTPBP10 Missense_Mutation p.M293I 0.33 tolerated(0.23) benign(0.003) TCGA-53-7624-01 7 90895395 90895395 G A FZD1 Silent p.E400E 0.66 TCGA-53-7624-01 7 94928339 94928339 G A PON1 Nonsense_Mutation p.Q329* 0.68 TCGA-53-7624-01 7 95115331 95115331 A G ASB4 Silent p.L16L 0.58 TCGA-53-7624-01 7 97493702 97493702 C A ASNS Missense_Mutation p.G119V 0.68 deleterious(0) probably_damaging(0.993) TCGA-53-7624-01 8 104225171 104225171 C A BAALC Missense_Mutation p.S62Y 0.40 tolerated(0.16) possibly_damaging(0.894) TCGA-53-7624-01 8 105393488 105393488 G T DPYS Missense_Mutation p.L500M 0.51 tolerated(0.06) benign(0.192) TCGA-53-7624-01 8 106813294 106813294 C G ZFPM2 Missense_Mutation p.F328L 0.52 tolerated(0.36) benign(0.021) TCGA-53-7624-01 8 110497338 110497338 C T PKHD1L1 Silent p.I3214I 0.22 TCGA-53-7624-01 8 113421187 113421187 G A CSMD3 Nonsense_Mutation p.Q1824* 0.56 TCGA-53-7624-01 8 113484912 113484912 C A CSMD3 Missense_Mutation p.G1768V 0.67 deleterious(0) probably_damaging(0.943) TCGA-53-7624-01 8 114185986 114185986 G T CSMD3 Missense_Mutation p.T225K 0.65 tolerated(0.61) benign(0.395) TCGA-53-7624-01 8 117875490 117875490 C A RAD21 Missense_Mutation p.M51I 0.61 tolerated(0.31) benign(0.349) TCGA-53-7624-01 8 121013906 121013906 G T DEPTOR Missense_Mutation p.R249S 0.67 deleterious(0) probably_damaging(0.96) TCGA-53-7624-01 8 125025668 125025668 C T FER1L6 Intron 0.30 TCGA-53-7624-01 8 125025849 125025849 G T FER1L6 Intron 0.73 TCGA-53-7624-01 8 12879225 12879225 G T KIAA1456 Missense_Mutation p.G346V 0.52 deleterious(0.04) benign(0.249) TCGA-53-7624-01 8 133726420 133726420 G T TMEM71 Nonsense_Mutation p.S246* 0.20 TCGA-53-7624-01 8 134062207 134062207 G T SLA Missense_Mutation p.S103Y 0.60 deleterious(0) probably_damaging(1) TCGA-53-7624-01 8 142199130 142199130 G A DENND3 Missense_Mutation p.E964K 0.31 tolerated(0.13) benign(0.066) TCGA-53-7624-01 8 144942702 144942702 C A EPPK1 Missense_Mutation p.A1574S 0.43 probably_damaging(0.999) TCGA-53-7624-01 8 146032616 146032616 G A ZNF517 Silent p.Q105Q 0.48 TCGA-53-7624-01 8 21931341 21931341 A G DMTN Missense_Mutation p.H277R 0.44 deleterious(0.01) benign(0.04) TCGA-53-7624-01 8 22421801 22421801 C T SORBS3 Silent p.L227L 0.50 TCGA-53-7624-01 8 22442667 22442667 C G PDLIM2 Missense_Mutation p.I401M 0.56 tolerated(0.08) benign(0.08) TCGA-53-7624-01 8 22864461 22864461 C - RHOBTB2 Frame_Shift_Del p.K259Sfs*64 0.41 TCGA-53-7624-01 8 33416288 33416288 C A RNF122 Silent p.G9G 0.49 TCGA-53-7624-01 8 35544096 35544096 C T UNC5D Missense_Mutation p.S318F 0.31 deleterious(0) probably_damaging(0.934) TCGA-53-7624-01 8 36793247 36793247 T A KCNU1 Missense_Mutation p.S1087T 0.25 tolerated_low_confidence(0.79) benign(0.045) TCGA-53-7624-01 8 37620234 37620234 G T PROSC Silent p.A19A 0.40 TCGA-53-7624-01 8 38277222 38277222 C A FGFR1 Silent p.S402S 0.40 TCGA-53-7624-01 8 42977826 42977826 G C POMK Missense_Mutation p.D287H 0.26 deleterious(0) benign(0.098) TCGA-53-7624-01 8 43052821 43052821 A C HGSNAT Missense_Mutation p.I517L 0.17 tolerated(0.06) benign(0.02) TCGA-53-7624-01 8 48309095 48309095 A T SPIDR Nonsense_Mutation p.K229* 0.31 TCGA-53-7624-01 8 51449284 51449284 G T SNTG1 Missense_Mutation p.W199L 0.21 deleterious(0.02) benign(0.343) TCGA-53-7624-01 8 53085051 53085051 C A ST18 Nonsense_Mutation p.E124* 0.57 TCGA-53-7624-01 8 59510429 59510429 C T NSMAF Missense_Mutation p.D571N 0.18 deleterious(0.04) benign(0.16) TCGA-53-7624-01 8 59720703 59720703 G A TOX Silent p.D506D 0.16 TCGA-53-7624-01 8 61655063 61655063 G T CHD7 Missense_Mutation p.G358C 0.26 benign(0.004) TCGA-53-7624-01 8 67492438 67492438 T C MYBL1 Missense_Mutation p.E344G 0.47 deleterious(0.04) probably_damaging(0.933) TCGA-53-7624-01 8 68430279 68430279 C A CPA6 Missense_Mutation p.D66Y 0.48 deleterious(0.01) probably_damaging(0.992) TCGA-53-7624-01 8 69031742 69031742 T A PREX2 Missense_Mutation p.F1166Y 0.26 deleterious(0.02) possibly_damaging(0.708) TCGA-53-7624-01 8 69104750 69104750 G A PREX2 Missense_Mutation p.G1532S 0.50 deleterious(0) probably_damaging(0.99) TCGA-53-7624-01 8 72111605 72111605 C A EYA1 Silent p.L583L 0.31 TCGA-53-7624-01 8 72128966 72128966 C A EYA1 Missense_Mutation p.V441L 0.20 tolerated(0.14) benign(0.024) TCGA-53-7624-01 8 77618170 77618170 C A ZFHX4 Missense_Mutation p.P616Q 0.80 possibly_damaging(0.904) TCGA-53-7624-01 8 77765551 77765551 C A ZFHX4 Missense_Mutation p.P2132T 0.73 possibly_damaging(0.706) TCGA-53-7624-01 8 8176185 8176185 G - SGK223 Frame_Shift_Del p.R1234Gfs*120 0.40 TCGA-53-7624-01 8 88249284 88249284 G T CNBD1 Nonsense_Mutation p.E239* 0.24 TCGA-53-7624-01 8 94746533 94746533 G A RBM12B Silent p.P702P 0.14 TCGA-53-7624-01 8 95523654 95523654 G A KIAA1429 Missense_Mutation p.S1050L 0.21 deleterious(0) possibly_damaging(0.891) TCGA-53-7624-01 8 99149118 99149118 G T POP1 Missense_Mutation p.R433L 0.25 deleterious(0) probably_damaging(1) TCGA-53-7624-01 9 104499906 104499906 G T GRIN3A Missense_Mutation p.A119E 0.75 tolerated_low_confidence(1) benign(0.003) TCGA-53-7624-01 9 108536320 108536320 T A TMEM38B Missense_Mutation p.S279T 0.06 tolerated(0.25) benign(0.11) TCGA-53-7624-01 9 114305100 114305100 C T ZNF483 Missense_Mutation p.H629Y 0.71 deleterious(0) benign(0.365) TCGA-53-7624-01 9 114305175 114305175 C G ZNF483 Missense_Mutation p.Q654E 0.74 tolerated(0.07) benign(0.084) TCGA-53-7624-01 9 117819515 117819515 G C TNC Missense_Mutation p.P1499R 0.45 tolerated(0.56) benign(0.008) TCGA-53-7624-01 9 117826935 117826935 C A TNC Missense_Mutation p.A1160S 0.68 tolerated(0.08) benign(0.01) TCGA-53-7624-01 9 123671553 123671553 C G TRAF1 Missense_Mutation p.M329I 0.23 deleterious(0) possibly_damaging(0.715) TCGA-53-7624-01 9 126129602 126129602 G T CRB2 Silent p.A302A 0.71 TCGA-53-7624-01 9 130486546 130486546 C A TTC16 Missense_Mutation p.H340Q 0.81 tolerated(0.05) possibly_damaging(0.649) TCGA-53-7624-01 9 132620784 132620784 C T USP20 Silent p.F79F 0.46 TCGA-53-7624-01 9 135933499 135933499 C T GTF3C5 3'UTR 0.57 TCGA-53-7624-01 9 136501599 136501599 G T DBH Missense_Mutation p.A36S 0.67 tolerated(0.45) benign(0.032) TCGA-53-7624-01 9 137688242 137688242 C T COL5A1 Missense_Mutation p.P941L 0.70 unknown(0) TCGA-53-7624-01 9 139370617 139370617 C G SEC16A Missense_Mutation p.S484T 0.64 tolerated(0.08) possibly_damaging(0.673) TCGA-53-7624-01 9 140059609 140059609 A C GRIN1 Intron 0.64 TCGA-53-7624-01 9 140953611 140953611 C G CACNA1B Missense_Mutation p.C1518W 0.81 deleterious(0) probably_damaging(0.997) TCGA-53-7624-01 9 19056243 19056243 G A HAUS6 3'UTR 0.63 TCGA-53-7624-01 9 3257090 3257090 C A RFX3 Missense_Mutation p.W572L 0.74 deleterious(0) probably_damaging(0.95) TCGA-53-7624-01 9 37744574 37744574 C G FRMPD1 Missense_Mutation p.Q849E 0.13 deleterious(0) benign(0.437) TCGA-53-7624-01 9 65506651 65506651 G A SPATA31A7 Silent p.S303S 0.72 TCGA-53-7624-01 9 6605134 6605134 A T GLDC Missense_Mutation p.S286R 0.86 tolerated(0.37) benign(0.049) TCGA-53-7624-01 9 70917833 70917833 G T FOXD4L3 5'UTR 0.15 TCGA-53-7624-01 9 72006543 72006543 A T FAM189A2 Silent p.T392T 0.66 TCGA-53-7624-01 9 72338243 72338247 TATGA - PTAR1 Frame_Shift_Del p.C314Wfs*28 0.18 TCGA-53-7624-01 9 73235030 73235030 C G TRPM3 Missense_Mutation p.M685I 0.56 deleterious(0.05) possibly_damaging(0.491) TCGA-53-7624-01 9 74345089 74345089 G A TMEM2 Silent p.F618F 0.30 TCGA-53-7624-01 9 75355032 75355032 C G TMC1 Intron 0.66 TCGA-53-7624-01 9 75526897 75526897 C T ALDH1A1 Missense_Mutation p.E393K 0.13 deleterious(0.03) benign(0.347) TCGA-53-7624-01 9 78710919 78710919 C A PCSK5 Missense_Mutation p.S336R 0.63 deleterious(0) probably_damaging(1) TCGA-53-7624-01 9 78772037 78772037 C A PCSK5 Silent p.P463P 0.56 TCGA-53-7624-01 9 82340004 82340004 A G TLE4 Missense_Mutation p.Y756C 0.62 deleterious(0) probably_damaging(1) TCGA-53-7624-01 X 100510193 100510193 A G DRP2 Missense_Mutation p.Q734R 0.60 tolerated(0.83) benign(0.013) TCGA-53-7624-01 X 104464181 104464181 G T TEX13A Missense_Mutation p.A232D 0.74 deleterious(0.01) benign(0.116) TCGA-53-7624-01 X 107381362 107381362 A T ATG4A Missense_Mutation p.Q252L 0.68 deleterious(0) benign(0.285) TCGA-53-7624-01 X 110544910 110544910 C A DCX 3'UTR 0.54 TCGA-53-7624-01 X 123211828 123211828 A G STAG2 Missense_Mutation p.I899V 0.80 deleterious(0) probably_damaging(0.998) TCGA-53-7624-01 X 128652375 128652375 G A SMARCA1 Missense_Mutation p.S75F 0.23 tolerated(0.07) possibly_damaging(0.811) TCGA-53-7624-01 X 12905137 12905137 A T TLR7 Missense_Mutation p.S504C 0.61 deleterious(0) possibly_damaging(0.706) TCGA-53-7624-01 X 13061250 13061250 G C FAM9C Missense_Mutation p.T60R 0.59 tolerated(0.55) benign(0.011) TCGA-53-7624-01 X 136112486 136112486 G T GPR101 Missense_Mutation p.H450N 0.51 tolerated(0.13) probably_damaging(0.998) TCGA-53-7624-01 X 147011726 147011728 TGA - FMR1 In_Frame_Del p.I199del 0.19 TCGA-53-7624-01 X 147062985 147062985 G T FMR1NB Silent p.V21V 0.70 TCGA-53-7624-01 X 148037737 148037737 A T AFF2 Missense_Mutation p.N721I 0.71 deleterious(0.01) possibly_damaging(0.798) TCGA-53-7624-01 X 148059939 148059939 A T AFF2 Missense_Mutation p.K1175M 0.78 deleterious(0) probably_damaging(0.999) TCGA-53-7624-01 X 1499970 1499970 C G IL3RA Missense_Mutation p.I345M 0.25 tolerated(0.15) benign(0.043) TCGA-53-7624-01 X 151899974 151899974 C A MAGEA12 Missense_Mutation p.R276M 0.70 deleterious(0) probably_damaging(1) TCGA-53-7624-01 X 152956881 152956881 G A SLC6A8 Missense_Mutation p.G173S 0.76 tolerated(0.22) benign(0.159) TCGA-53-7624-01 X 153880633 153880633 C G CTAG2 Missense_Mutation p.G181A 0.67 deleterious_low_confidence(0) unknown(0) TCGA-53-7624-01 X 154194882 154194882 C G F8 Missense_Mutation p.D364H 0.41 deleterious(0.03) possibly_damaging(0.639) TCGA-53-7624-01 X 18944619 18944619 T A PHKA2 Missense_Mutation p.I471F 0.59 tolerated(0.08) benign(0.032) TCGA-53-7624-01 X 26158057 26158057 G C MAGEB18 Missense_Mutation p.A319P 0.64 tolerated(0.1) possibly_damaging(0.897) TCGA-53-7624-01 X 30237505 30237505 C A MAGEB2 Missense_Mutation p.R270S 0.54 tolerated(0.22) benign(0.035) TCGA-53-7624-01 X 30261345 30261345 G T MAGEB4 3'UTR 0.75 TCGA-53-7624-01 X 3228906 3228906 G T MXRA5 Silent p.P2446P 0.51 TCGA-53-7624-01 X 44101396 44101396 C T EFHC2 Silent p.R417R 0.67 TCGA-53-7624-01 X 48687841 48687841 G T ERAS Missense_Mutation p.R103M 0.66 deleterious(0.02) possibly_damaging(0.81) TCGA-53-7624-01 X 48687842 48687842 G A ERAS Silent p.R103R 0.65 TCGA-53-7624-01 X 54497771 54497771 G A FGD1 Missense_Mutation p.R153W 0.71 deleterious(0) possibly_damaging(0.876) TCGA-53-7624-01 X 57337068 57337068 G A FAAH2 Silent p.K106K 0.83 TCGA-53-7624-01 X 63412891 63412891 C A AMER1 Missense_Mutation p.K92N 0.55 deleterious(0.03) probably_damaging(0.984) TCGA-53-7624-01 X 68382735 68382735 C A PJA1 Missense_Mutation p.G116V 0.61 tolerated(0.72) benign(0.034) TCGA-53-7624-01 X 70387434 70387434 G A NLGN3 Missense_Mutation p.R496H 0.60 deleterious(0.03) possibly_damaging(0.871) TCGA-53-7624-01 X 75003281 75003281 C A MAGEE2 3'UTR 0.54 TCGA-53-7624-01 X 79286491 79286491 C T TBX22 Missense_Mutation p.P482S 0.58 tolerated(0.42) possibly_damaging(0.743) TCGA-53-7624-01 X 79937522 79937522 C A BRWD3 Missense_Mutation p.R1490M 0.67 deleterious(0.01) possibly_damaging(0.781) TCGA-53-7624-01 X 91131801 91131801 G A PCDH11X Missense_Mutation p.D188N 0.59 deleterious(0.03) probably_damaging(0.956) TCGA-53-7624-01 X 9728837 9728837 C A GPR143 Nonsense_Mutation p.G94* 0.89 TCGA-53-7624-01 X 9864172 9864172 G T SHROOM2 Missense_Mutation p.G742W 0.44 tolerated(0.07) possibly_damaging(0.697) TCGA-53-7626-01 10 105815145 105815145 T A COL17A1 Missense_Mutation p.S568C 0.20 unknown(0) TCGA-53-7626-01 10 105990542 105990542 T A WDR96 Missense_Mutation p.Y42F 0.11 deleterious(0) possibly_damaging(0.816) TCGA-53-7626-01 10 124396776 124396776 C G DMBT1 Missense_Mutation p.P2168R 0.14 tolerated(0.23) possibly_damaging(0.903) TCGA-53-7626-01 10 135233639 135233639 G T MTG1 Silent p.R325R 0.30 TCGA-53-7626-01 10 15255673 15255673 C A FAM171A1 Silent p.L638L 0.38 TCGA-53-7626-01 10 15600165 15600165 C T ITGA8 Missense_Mutation p.A892T 0.25 tolerated(0.44) benign(0.426) TCGA-53-7626-01 10 27409370 27409370 C A YME1L1 Missense_Mutation p.D526Y 0.21 deleterious(0.01) probably_damaging(0.957) TCGA-53-7626-01 10 27539200 27539200 G T RP11-85G18.6 RNA 0.18 TCGA-53-7626-01 10 30615418 30615418 C A MTPAP Silent p.R309R 0.11 TCGA-53-7626-01 10 43610004 43610004 G C RET Silent p.L652L 0.15 TCGA-53-7626-01 10 5138693 5138693 A G AKR1C3 Missense_Mutation p.E59G 0.11 deleterious(0.02) possibly_damaging(0.635) TCGA-53-7626-01 10 55582648 55582648 C G PCDH15 Missense_Mutation p.G1615A 0.18 tolerated_low_confidence(0.07) benign(0.071) TCGA-53-7626-01 10 55826597 55826597 C A PCDH15 Missense_Mutation p.A714S 0.12 tolerated(0.34) benign(0.011) TCGA-53-7626-01 10 5927686 5927686 C A ANKRD16 Missense_Mutation p.R193M 0.18 deleterious(0.01) probably_damaging(0.976) TCGA-53-7626-01 10 64575808 64575808 G T EGR2 5'UTR 0.18 TCGA-53-7626-01 10 73591639 73591639 G A PSAP Silent p.T71T 0.23 TCGA-53-7626-01 10 85984201 85984201 G T LRIT2 Silent p.A260A 0.18 TCGA-53-7626-01 10 90074241 90074241 T C RNLS Silent p.Q286Q 0.26 TCGA-53-7626-01 10 91488933 91488933 G T KIF20B Missense_Mutation p.D734Y 0.13 deleterious(0) possibly_damaging(0.66) TCGA-53-7626-01 10 95141111 95141111 G T MYOF Missense_Mutation p.H581N 0.26 deleterious(0) probably_damaging(0.995) TCGA-53-7626-01 10 95518028 95518028 C A LGI1 Missense_Mutation p.P43T 0.15 deleterious(0) probably_damaging(0.996) TCGA-53-7626-01 11 108384345 108384345 G A EXPH5 Missense_Mutation p.S630F 0.07 tolerated(0.08) probably_damaging(0.94) TCGA-53-7626-01 11 123909438 123909438 T C OR10G7 Missense_Mutation p.I91V 0.15 deleterious(0.01) benign(0.053) TCGA-53-7626-01 11 134241027 134241027 G T GLB1L2 Silent p.V447V 0.12 TCGA-53-7626-01 11 20621119 20621119 C G SLC6A5 5'UTR 0.27 TCGA-53-7626-01 11 36512083 36512083 C A TRAF6 Missense_Mutation p.V292F 0.23 tolerated(0.32) benign(0.1) TCGA-53-7626-01 11 47236683 47236683 A T DDB2 5'UTR 0.11 TCGA-53-7626-01 11 47296557 47296557 C G MADD Missense_Mutation p.S169C 0.18 tolerated(0.18) benign(0) TCGA-53-7626-01 11 48238420 48238420 C A OR4B1 Missense_Mutation p.A20D 0.20 tolerated(0.24) benign(0.001) TCGA-53-7626-01 11 55110821 55110821 G T OR4A16 Missense_Mutation p.G49C 0.17 tolerated_low_confidence(0.07) possibly_damaging(0.497) TCGA-53-7626-01 11 55111429 55111429 C A OR4A16 Silent p.P251P 0.17 TCGA-53-7626-01 11 55563619 55563619 C - OR5D14 Frame_Shift_Del p.H198Tfs*17 0.14 TCGA-53-7626-01 11 56230095 56230095 G T OR5M9 Silent p.P261P 0.17 TCGA-53-7626-01 11 58170847 58170847 A T OR5B3 Silent p.L12L 0.17 TCGA-53-7626-01 11 58478071 58478071 G T GLYAT Silent p.P160P 0.16 TCGA-53-7626-01 11 59630179 59630179 C A TCN1 Silent p.S92S 0.24 TCGA-53-7626-01 11 6232961 6232961 A CG FAM160A2 Frame_Shift_Ins p.A914Gfs*14 0.10 TCGA-53-7626-01 11 85692255 85692255 G A PICALM Nonsense_Mutation p.Q566* 0.23 TCGA-53-7626-01 11 94862474 94862474 C T ENDOD1 Missense_Mutation p.L412F 0.14 tolerated(0.99) benign(0.001) TCGA-53-7626-01 12 10562220 10562220 A G KLRC4 5'UTR 0.17 TCGA-53-7626-01 12 113319615 113319615 C A RPH3A Silent p.P430P 0.20 TCGA-53-7626-01 12 116413011 116413011 C A MED13L Missense_Mutation p.G1899V 0.12 deleterious(0) probably_damaging(0.995) TCGA-53-7626-01 12 119937958 119937958 C G CCDC60 Missense_Mutation p.F211L 0.22 deleterious(0) probably_damaging(0.963) TCGA-53-7626-01 12 15669860 15669860 A T PTPRO Silent p.I583I 0.21 TCGA-53-7626-01 12 15669861 15669861 G T PTPRO Missense_Mutation p.A584S 0.23 tolerated(0.08) possibly_damaging(0.804) TCGA-53-7626-01 12 1965194 1965194 C T CACNA2D4 Silent p.K712K 0.17 TCGA-53-7626-01 12 23818489 23818489 G A SOX5 Nonsense_Mutation p.Q274* 0.23 TCGA-53-7626-01 12 2791158 2791158 G T CACNA1C Intron 0.12 TCGA-53-7626-01 12 33579112 33579112 C A SYT10 Missense_Mutation p.R157L 0.19 deleterious(0.02) benign(0.121) TCGA-53-7626-01 12 41316083 41316083 G T CNTN1 Missense_Mutation p.D85Y 0.24 deleterious(0.01) probably_damaging(0.985) TCGA-53-7626-01 12 43777718 43777718 A G ADAMTS20 Silent p.V1505V 0.13 TCGA-53-7626-01 12 45417504 45417504 G T DBX2 Missense_Mutation p.L225I 0.17 deleterious(0) probably_damaging(0.998) TCGA-53-7626-01 12 52845722 52845722 C A KRT6B Silent p.L47L 0.10 TCGA-53-7626-01 12 55615378 55615378 G A OR10A7 Silent p.V190V 0.19 TCGA-53-7626-01 12 63954249 63954249 T C DPY19L2 3'UTR 0.17 TCGA-53-7626-01 12 6776900 6776900 C T ZNF384 Missense_Mutation p.E572K 0.09 deleterious(0) benign(0.292) TCGA-53-7626-01 12 71898402 71898402 G T LGR5 Missense_Mutation p.S74I 0.18 deleterious(0) probably_damaging(0.995) TCGA-53-7626-01 12 73015519 73015519 G T TRHDE Missense_Mutation p.S843I 0.26 deleterious(0.01) probably_damaging(0.989) TCGA-53-7626-01 12 7585940 7585940 C G CD163L1 Intron 0.24 TCGA-53-7626-01 12 7632483 7632483 C T CD163 Silent p.K1151K 0.20 TCGA-53-7626-01 12 7984305 7984305 G T SLC2A14 Missense_Mutation p.S79Y 0.20 deleterious(0) possibly_damaging(0.872) TCGA-53-7626-01 12 8329900 8329900 C A ZNF705A Silent p.A208A 0.25 TCGA-53-7626-01 12 9353608 9353608 C A PZP Missense_Mutation p.A184S 0.18 tolerated(0.83) benign(0) TCGA-53-7626-01 13 108881821 108881821 A G ABHD13 Silent p.P85P 0.14 TCGA-53-7626-01 13 23904603 23904603 T A SACS Missense_Mutation p.E4471V 0.21 probably_damaging(0.998) TCGA-53-7626-01 13 33110497 33110497 T C N4BP2L2 Intron 0.14 TCGA-53-7626-01 13 36228995 36228995 A G NBEA Missense_Mutation p.N2659S 0.13 tolerated(0.98) benign(0.008) TCGA-53-7626-01 13 39544337 39544337 G T STOML3 Silent p.I167I 0.19 TCGA-53-7626-01 13 43474446 43474446 C A EPSTI1 Missense_Mutation p.R283M 0.20 deleterious(0.01) probably_damaging(0.928) TCGA-53-7626-01 13 51922467 51922467 C T SERPINE3 Silent p.I273I 0.24 TCGA-53-7626-01 13 52951957 52951957 A G THSD1 Silent p.S716S 0.19 TCGA-53-7626-01 13 53624108 53624108 C A OLFM4 Missense_Mutation p.S245R 0.20 deleterious(0) possibly_damaging(0.786) TCGA-53-7626-01 13 67205364 67205364 A G PCDH9 Silent p.D1106D 0.11 TCGA-53-7626-01 13 84455447 84455447 G T SLITRK1 Missense_Mutation p.H66N 0.16 tolerated(0.85) benign(0.004) TCGA-53-7626-01 13 97639970 97639970 G T OXGR1 Missense_Mutation p.P15H 0.17 tolerated(0.12) benign(0.01) TCGA-53-7626-01 14 35873698 35873698 C T NFKBIA Silent p.E51E 0.31 TCGA-53-7626-01 14 52526841 52526841 C - NID2 Splice_Site p.X256_splice 0.21 TCGA-53-7626-01 14 72939605 72939605 G A RGS6 Missense_Mutation p.E188K 0.30 deleterious(0) possibly_damaging(0.616) TCGA-53-7626-01 14 75264921 75264921 C T YLPM1 Missense_Mutation p.S974L 0.38 benign(0.419) TCGA-53-7626-01 14 81610628 81610628 T A TSHR Silent p.I742I 0.35 TCGA-53-7626-01 14 89091321 89091321 C G EML5 Missense_Mutation p.E1631Q 0.29 deleterious(0.02) benign(0.331) TCGA-53-7626-01 15 33878289 33878289 T A RYR3 Missense_Mutation p.L587Q 0.24 probably_damaging(0.995) TCGA-53-7626-01 15 38243442 38243442 A G TMCO5A 3'UTR 0.27 TCGA-53-7626-01 15 48808532 48808532 G A FBN1 Missense_Mutation p.P392L 0.28 benign(0.006) TCGA-53-7626-01 15 88476310 88476310 C A NTRK3 Missense_Mutation p.G608C 0.27 deleterious(0.01) probably_damaging(0.915) TCGA-53-7626-01 16 16276354 16276354 C A ABCC6 Missense_Mutation p.W721L 0.28 tolerated(0.36) benign(0.021) TCGA-53-7626-01 16 1718043 1718043 G C CRAMP1L Missense_Mutation p.E1061D 0.12 tolerated(0.12) possibly_damaging(0.539) TCGA-53-7626-01 16 20441082 20441082 A T ACSM5 Missense_Mutation p.T362S 0.09 deleterious(0.03) benign(0.246) TCGA-53-7626-01 16 20482880 20482880 G C ACSM2A Missense_Mutation p.D255H 0.15 deleterious(0) probably_damaging(0.999) TCGA-53-7626-01 16 20488769 20488769 C A ACSM2A Missense_Mutation p.Q393K 0.19 tolerated(0.13) possibly_damaging(0.83) TCGA-53-7626-01 16 21048036 21048036 C A DNAH3 Missense_Mutation p.Q1695H 0.23 deleterious(0) probably_damaging(0.988) TCGA-53-7626-01 16 21073854 21073854 C A DNAH3 Silent p.S1223S 0.17 TCGA-53-7626-01 16 30899127 30899127 T A BCL7C 3'UTR 0.20 TCGA-53-7626-01 16 57954298 57954298 G T CNGB1 Silent p.P598P 0.10 TCGA-53-7626-01 16 66950032 66950032 A T CDH16 Missense_Mutation p.N120K 0.17 deleterious(0) possibly_damaging(0.858) TCGA-53-7626-01 16 67320659 67320659 T C PLEKHG4 Missense_Mutation p.L921P 0.25 deleterious(0) probably_damaging(0.998) TCGA-53-7626-01 16 70595659 70595659 A G SF3B3 Missense_Mutation p.I754V 0.21 tolerated(0.52) benign(0.014) TCGA-53-7626-01 16 77401440 77401440 C A ADAMTS18 Missense_Mutation p.G226C 0.29 tolerated(0.1) benign(0.353) TCGA-53-7626-01 16 81388292 81388292 G T GAN Missense_Mutation p.V189F 0.27 deleterious(0) probably_damaging(0.955) TCGA-53-7626-01 17 17122418 17122418 G T FLCN Missense_Mutation p.P326Q 0.21 tolerated(0.65) benign(0.157) TCGA-53-7626-01 17 19687150 19687150 C A ULK2 Missense_Mutation p.G774C 0.22 deleterious(0) possibly_damaging(0.897) TCGA-53-7626-01 17 26086080 26086080 G T NOS2 Silent p.R1061R 0.24 TCGA-53-7626-01 17 30349307 30349307 C G LRRC37B Missense_Mutation p.S381C 0.22 deleterious(0.02) benign(0.275) TCGA-53-7626-01 17 39092731 39092731 C G KRT23 Missense_Mutation p.R42P 0.20 tolerated(0.25) possibly_damaging(0.637) TCGA-53-7626-01 17 45518003 45518003 C A EFCAB13 Missense_Mutation p.H949N 0.14 deleterious_low_confidence(0.05) benign(0) TCGA-53-7626-01 17 47656161 47656161 G A NXPH3 Silent p.P86P 0.15 TCGA-53-7626-01 17 50008437 50008437 T A CA10 Missense_Mutation p.K64N 0.14 deleterious(0) probably_damaging(0.995) TCGA-53-7626-01 17 51901016 51901016 C - KIF2B Frame_Shift_Del p.P209Rfs*10 0.22 TCGA-53-7626-01 17 54543847 54543847 A T ANKFN1 Missense_Mutation p.Q566L 0.16 tolerated(0.06) benign(0.104) TCGA-53-7626-01 17 56400700 56400700 C A BZRAP1 Nonsense_Mutation p.E355* 0.19 TCGA-53-7626-01 17 57917132 57917132 G C VMP1 Missense_Mutation p.E361Q 0.06 tolerated(0.42) benign(0.062) TCGA-53-7626-01 17 58149573 58149573 T A HEATR6 Intron 0.16 TCGA-53-7626-01 17 6483031 6483031 C T KIAA0753 3'UTR 0.09 TCGA-53-7626-01 17 72278023 72278023 C G DNAI2 Missense_Mutation p.R23G 0.25 deleterious(0.03) benign(0.04) TCGA-53-7626-01 17 73702717 73702717 G A SAP30BP 3'UTR 0.36 TCGA-53-7626-01 17 7577570 7577570 C T TP53 Missense_Mutation p.M237I 0.18 deleterious(0) probably_damaging(0.997) TCGA-53-7626-01 18 10681738 10681738 T A PIEZO2 Missense_Mutation p.M2454L 0.18 deleterious(0) possibly_damaging(0.866) TCGA-53-7626-01 18 13826290 13826290 G T MC5R Missense_Mutation p.V176F 0.24 tolerated(0.06) possibly_damaging(0.501) TCGA-53-7626-01 18 14787073 14787073 G T ANKRD30B Missense_Mutation p.D570Y 0.19 tolerated(0.26) benign(0.012) TCGA-53-7626-01 18 18531301 18531301 C A ROCK1 3'UTR 0.25 TCGA-53-7626-01 18 22806665 22806665 C A ZNF521 Missense_Mutation p.S406I 0.33 deleterious(0.01) benign(0.231) TCGA-53-7626-01 18 25570215 25570215 C A CDH2 Missense_Mutation p.A482S 0.27 deleterious(0.03) possibly_damaging(0.84) TCGA-53-7626-01 18 25583076 25583076 C A CDH2 Missense_Mutation p.G302V 0.33 deleterious(0) probably_damaging(0.998) TCGA-53-7626-01 18 28651795 28651795 C G DSC2 Missense_Mutation p.R634P 0.26 tolerated(0.19) possibly_damaging(0.822) TCGA-53-7626-01 18 29039949 29039949 C A DSG3 Missense_Mutation p.T220N 0.38 deleterious(0) probably_damaging(0.99) TCGA-53-7626-01 18 30926184 30926184 C G CCDC178 Missense_Mutation p.V217L 0.30 deleterious(0.03) probably_damaging(0.997) TCGA-53-7626-01 18 61328320 61328320 C A SERPINB3 Missense_Mutation p.G44V 0.22 deleterious(0.03) probably_damaging(0.987) TCGA-53-7626-01 18 61602259 61602259 C A SERPINB10 Missense_Mutation p.S326Y 0.31 deleterious(0) probably_damaging(0.968) TCGA-53-7626-01 18 77703343 77703343 C A PQLC1 Missense_Mutation p.R108L 0.20 tolerated(0.05) possibly_damaging(0.688) TCGA-53-7626-01 19 1053825 1053825 A C ABCA7 Silent p.T1154T 0.12 TCGA-53-7626-01 19 12989306 12989306 A T DNASE2 Missense_Mutation p.V200E 0.24 deleterious(0) possibly_damaging(0.776) TCGA-53-7626-01 19 1488005 1488005 G T PCSK4 Missense_Mutation p.D158E 0.18 deleterious(0) probably_damaging(1) TCGA-53-7626-01 19 15082639 15082639 G A SLC1A6 Nonsense_Mutation p.Q85* 0.16 TCGA-53-7626-01 19 17922542 17922542 C T B3GNT3 Missense_Mutation p.P244S 0.17 deleterious(0) probably_damaging(1) TCGA-53-7626-01 19 17986910 17986910 C A SLC5A5 Silent p.L231L 0.26 TCGA-53-7626-01 19 19345853 19345853 T A NCAN Missense_Mutation p.N1066K 0.10 deleterious(0.01) probably_damaging(0.994) TCGA-53-7626-01 19 20806889 20806889 C G ZNF626 3'UTR 0.38 TCGA-53-7626-01 19 30934603 30934603 A T ZNF536 Missense_Mutation p.H45L 0.13 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-53-7626-01 19 31039599 31039599 C A ZNF536 Missense_Mutation p.L1025M 0.12 deleterious(0.04) probably_damaging(0.998) TCGA-53-7626-01 19 31770099 31770099 G T TSHZ3 Missense_Mutation p.S200R 0.22 deleterious(0) possibly_damaging(0.849) TCGA-53-7626-01 19 38126323 38126323 C A ZFP30 Missense_Mutation p.Q373H 0.24 tolerated(0.09) probably_damaging(0.994) TCGA-53-7626-01 19 39103262 39103262 C G MAP4K1 Silent p.V218V 0.17 TCGA-53-7626-01 19 3941117 3941117 C A NMRK2 Missense_Mutation p.H148Q 0.13 deleterious(0) probably_damaging(0.997) TCGA-53-7626-01 19 39760264 39760264 A T IFNL2 Missense_Mutation p.Q136L 0.12 deleterious(0.05) benign(0.028) TCGA-53-7626-01 19 40872360 40872360 G T PLD3 5'UTR 0.36 TCGA-53-7626-01 19 4110509 4110509 T A MAP2K2 Missense_Mutation p.M150L 0.11 deleterious(0.01) probably_damaging(1) TCGA-53-7626-01 19 43430685 43430685 G T PSG7 Missense_Mutation p.P298H 0.18 deleterious(0.05) possibly_damaging(0.879) TCGA-53-7626-01 19 43920616 43920616 G C TEX101 Silent p.L118L 0.16 TCGA-53-7626-01 19 47935674 47935674 G C SLC8A2 Silent p.S713S 0.13 TCGA-53-7626-01 19 48733883 48733883 G - CARD8 Frame_Shift_Del p.R283Gfs*16 0.15 TCGA-53-7626-01 19 51381809 51381809 C A KLK2 Missense_Mutation p.N260K 0.19 deleterious(0) probably_damaging(0.972) TCGA-53-7626-01 19 51955805 51955805 C A SIGLEC8 Missense_Mutation p.G443V 0.25 deleterious(0.04) benign(0.235) TCGA-53-7626-01 19 52937229 52937229 G A ZNF534 Missense_Mutation p.V13M 0.19 deleterious(0) probably_damaging(0.983) TCGA-53-7626-01 19 53793483 53793483 A T BIRC8 Missense_Mutation p.W49R 0.19 deleterious(0) probably_damaging(1) TCGA-53-7626-01 19 54313761 54313761 C A NLRP12 Silent p.A384A 0.20 TCGA-53-7626-01 19 57336078 57336078 G C PEG3 5'UTR 0.28 TCGA-53-7626-01 19 57640279 57640279 A T USP29 Missense_Mutation p.N79I 0.16 deleterious(0) possibly_damaging(0.798) TCGA-53-7626-01 19 57724116 57724116 A T ZNF264 Missense_Mutation p.S551C 0.23 tolerated(0.08) benign(0.053) TCGA-53-7626-01 19 58187796 58187796 G C ZSCAN4 Missense_Mutation p.G95R 0.16 deleterious(0.01) benign(0.334) TCGA-53-7626-01 19 58578565 58578565 G A ZNF135 Missense_Mutation p.G262E 0.14 deleterious(0) probably_damaging(1) TCGA-53-7626-01 19 58578566 58578566 A G ZNF135 Silent p.G262G 0.13 TCGA-53-7626-01 19 9028337 9028337 G T MUC16 Missense_Mutation p.P12152H 0.21 probably_damaging(0.948) TCGA-53-7626-01 19 9090346 9090346 G T MUC16 Missense_Mutation p.S490Y 0.21 unknown(0) TCGA-53-7626-01 19 9213468 9213468 G A OR7G2 Missense_Mutation p.T172I 0.14 tolerated(1) benign(0.002) TCGA-53-7626-01 19 9407478 9407478 C A ZNF699 Missense_Mutation p.G201V 0.19 deleterious(0) benign(0.261) TCGA-53-7626-01 1 102269968 102269968 G T OLFM3 Silent p.S401S 0.11 TCGA-53-7626-01 1 102269969 102269969 G T OLFM3 Missense_Mutation p.S401Y 0.10 tolerated(0.4) possibly_damaging(0.899) TCGA-53-7626-01 1 12836075 12836075 T A PRAMEF12 Missense_Mutation p.L226Q 0.24 deleterious(0) probably_damaging(0.991) TCGA-53-7626-01 1 150681431 150681431 A C HORMAD1 Missense_Mutation p.S112A 0.09 deleterious(0) benign(0.403) TCGA-53-7626-01 1 152280118 152280118 A T FLG Missense_Mutation p.L2415H 0.15 probably_damaging(0.981) TCGA-53-7626-01 1 152280119 152280119 G T FLG Missense_Mutation p.L2415I 0.18 benign(0.168) TCGA-53-7626-01 1 152324228 152324228 G T FLG2 Missense_Mutation p.H2012N 0.27 benign(0.403) TCGA-53-7626-01 1 152325056 152325056 C A FLG2 Missense_Mutation p.G1736W 0.24 probably_damaging(0.965) TCGA-53-7626-01 1 152595328 152595328 A G LCE3A Silent p.S84S 0.11 TCGA-53-7626-01 1 156628521 156628521 G A BCAN Missense_Mutation p.R875K 0.21 tolerated(0.06) probably_damaging(0.986) TCGA-53-7626-01 1 15783627 15783627 G T CELA2A Silent p.V29V 0.22 TCGA-53-7626-01 1 158225793 158225793 G C CD1A Splice_Site p.X109_splice 0.18 TCGA-53-7626-01 1 158813834 158813834 C A MNDA Silent p.A164A 0.26 TCGA-53-7626-01 1 173886457 173886457 C G SERPINC1 5'UTR 0.21 TCGA-53-7626-01 1 181452918 181452918 G T CACNA1E Missense_Mutation p.G13V 0.34 tolerated_low_confidence(0.11) probably_damaging(0.953) TCGA-53-7626-01 1 186008104 186008104 G T HMCN1 Missense_Mutation p.A1999S 0.18 probably_damaging(0.996) TCGA-53-7626-01 1 197150178 197150178 C G ZBTB41 Missense_Mutation p.C539S 0.16 deleterious(0.02) possibly_damaging(0.894) TCGA-53-7626-01 1 202711841 202711841 C G KDM5B Missense_Mutation p.D806H 0.21 deleterious(0) probably_damaging(0.989) TCGA-53-7626-01 1 207646412 207646412 C A CR2 Nonsense_Mutation p.Y622* 0.15 TCGA-53-7626-01 1 214705845 214705845 G C PTPN14 Intron 0.29 TCGA-53-7626-01 1 220825454 220825454 G C MARK1 Silent p.L566L 0.14 TCGA-53-7626-01 1 222717364 222717364 C A HHIPL2 Missense_Mutation p.R163S 0.21 tolerated(0.41) benign(0.049) TCGA-53-7626-01 1 230841707 230841707 G T AGT Missense_Mutation p.L366I 0.20 tolerated(0.26) possibly_damaging(0.745) TCGA-53-7626-01 1 230846414 230846414 C A AGT Missense_Mutation p.K61N 0.15 tolerated(0.42) benign(0.003) TCGA-53-7626-01 1 235324345 235324345 C - RBM34 Frame_Shift_Del p.E31Kfs*76 0.42 TCGA-53-7626-01 1 237167558 237167558 G C MT1HL1 Missense_Mutation p.L39V 0.34 tolerated(1) unknown(0) TCGA-53-7626-01 1 24454646 24454646 C A IL22RA1 Missense_Mutation p.V219L 0.13 deleterious(0) benign(0.439) TCGA-53-7626-01 1 244747191 244747191 G T C1orf101 Missense_Mutation p.V679F 0.33 tolerated(0.27) benign(0.015) TCGA-53-7626-01 1 247614468 247614469 CT A OR2B11 Frame_Shift_Del p.Q272Hfs*13 0.09 TCGA-53-7626-01 1 247614745 247614745 G C OR2B11 Missense_Mutation p.N180K 0.20 deleterious(0) probably_damaging(0.996) TCGA-53-7626-01 1 248201833 248201833 C G OR2L2 Missense_Mutation p.N88K 0.17 tolerated(0.28) benign(0.009) TCGA-53-7626-01 1 248202089 248202089 A G OR2L2 Missense_Mutation p.N174D 0.25 tolerated(0.47) benign(0.019) TCGA-53-7626-01 1 248224498 248224498 C G OR2L3 Missense_Mutation p.A172G 0.19 tolerated(0.07) benign(0.278) TCGA-53-7626-01 1 248224827 248224827 C A OR2L3 Missense_Mutation p.P282T 0.26 deleterious(0) probably_damaging(0.992) TCGA-53-7626-01 1 248436444 248436444 G T OR2T33 Missense_Mutation p.H225N 0.11 deleterious(0.04) possibly_damaging(0.491) TCGA-53-7626-01 1 248512663 248512663 T C OR14C36 Missense_Mutation p.M196T 0.14 tolerated(0.4) benign(0.001) TCGA-53-7626-01 1 248512671 248512671 G T OR14C36 Missense_Mutation p.V199F 0.12 tolerated(0.11) benign(0.111) TCGA-53-7626-01 1 248551233 248551233 G T OR2T6 Missense_Mutation p.M108I 0.13 tolerated(0.64) benign(0.001) TCGA-53-7626-01 1 248570293 248570293 C A OR2T1 Missense_Mutation p.P333H 0.17 deleterious(0.01) probably_damaging(1) TCGA-53-7626-01 1 248570294 248570294 C A OR2T1 Silent p.P333P 0.17 TCGA-53-7626-01 1 248637474 248637474 C A OR2T3 Missense_Mutation p.Q275K 0.12 tolerated(0.85) benign(0.011) TCGA-53-7626-01 1 248652006 248652006 C A OR2T5 Missense_Mutation p.F39L 0.12 deleterious(0.02) benign(0.071) TCGA-53-7626-01 1 32829877 32829877 T A TSSK3 3'UTR 0.14 TCGA-53-7626-01 1 34330269 34330269 C G HMGB4 Silent p.L159L 0.13 TCGA-53-7626-01 1 35862216 35862216 T A ZMYM4 Missense_Mutation p.I992K 0.19 deleterious(0) benign(0.175) TCGA-53-7626-01 1 43896264 43896264 A G SZT2 Silent p.L1469L 0.19 TCGA-53-7626-01 1 50941222 50941222 T G FAF1 Missense_Mutation p.K595Q 0.12 tolerated(0.12) benign(0.014) TCGA-53-7626-01 1 53930460 53930460 C A DMRTB1 Missense_Mutation p.P301T 0.08 deleterious(0) probably_damaging(0.999) TCGA-53-7626-01 1 67147941 67147941 G C SGIP1 Missense_Mutation p.D402H 0.16 deleterious(0) probably_damaging(0.994) TCGA-53-7626-01 1 70339224 70339224 G T LRRC7 Intron 0.27 TCGA-53-7626-01 1 76211563 76211563 G - ACADM Frame_Shift_Del p.E229Kfs*14 0.09 TCGA-53-7626-01 1 7805023 7805023 G C CAMTA1 Missense_Mutation p.M1437I 0.05 deleterious(0.02) probably_damaging(0.943) TCGA-53-7626-01 1 89655932 89655932 G A GBP4 Missense_Mutation p.A329V 0.26 deleterious(0.03) benign(0.375) TCGA-53-7626-01 1 9097601 9097601 G T SLC2A5 3'UTR 0.20 TCGA-53-7626-01 1 91739299 91739299 T C HFM1 Missense_Mutation p.R1248G 0.22 deleterious_low_confidence(0.04) benign(0.012) TCGA-53-7626-01 20 2819111 2819111 G A PCED1A Missense_Mutation p.A203V 0.15 tolerated(0.15) benign(0.068) TCGA-53-7626-01 20 31024829 31024829 G T ASXL1 Missense_Mutation p.Q1438H 0.12 deleterious(0) probably_damaging(0.998) TCGA-53-7626-01 20 43995775 43995775 C T SYS1 3'UTR 0.08 TCGA-53-7626-01 20 47268019 47268019 T C PREX1 Missense_Mutation p.Y857C 0.11 deleterious(0) probably_damaging(0.999) TCGA-53-7626-01 21 11039103 11039103 G T BAGE2 RNA 0.04 TCGA-53-7626-01 21 31655024 31655024 C A KRTAP24-1 Missense_Mutation p.C76F 0.22 deleterious(0.04) probably_damaging(0.951) TCGA-53-7626-01 21 31812810 31812810 C G KRTAP15-1 Nonsense_Mutation p.Y55* 0.13 TCGA-53-7626-01 21 32253550 32253550 A G KRTAP11-1 Silent p.T98T 0.10 TCGA-53-7626-01 21 35497779 35497779 G T MRPS6 Missense_Mutation p.G62W 0.18 deleterious(0.04) benign(0.387) TCGA-53-7626-01 21 40670282 40670282 T C BRWD1 Intron 0.20 TCGA-53-7626-01 22 16287493 16287493 G T POTEH Silent p.L131L 0.12 TCGA-53-7626-01 22 16449081 16449081 C A OR11H1 Missense_Mutation p.G242C 0.23 deleterious(0.03) benign(0.008) TCGA-53-7626-01 22 17072290 17072290 C A CCT8L2 Missense_Mutation p.G384V 0.37 tolerated(0.36) benign(0.403) TCGA-53-7626-01 22 22142565 22142565 G A MAPK1 Silent p.F279F 0.18 TCGA-53-7626-01 22 30722752 30722752 G C TBC1D10A Missense_Mutation p.S40C 0.14 deleterious(0) possibly_damaging(0.832) TCGA-53-7626-01 22 44285300 44285300 A T PNPLA5 Missense_Mutation p.L204Q 0.16 deleterious(0.01) possibly_damaging(0.736) TCGA-53-7626-01 2 101192814 101192814 A G PDCL3 Splice_Site p.X193_splice 0.16 TCGA-53-7626-01 2 10712241 10712241 C A NOL10 Nonsense_Mutation p.G675* 0.21 TCGA-53-7626-01 2 130832747 130832747 G T POTEF Silent p.T766T 0.21 TCGA-53-7626-01 2 141200182 141200182 G T LRP1B Missense_Mutation p.S3435R 0.23 possibly_damaging(0.637) TCGA-53-7626-01 2 15760365 15760365 G T DDX1 Missense_Mutation p.D414Y 0.20 deleterious(0) probably_damaging(0.993) TCGA-53-7626-01 2 158300414 158300414 C A CYTIP Missense_Mutation p.R40I 0.09 deleterious(0.01) possibly_damaging(0.774) TCGA-53-7626-01 2 158401076 158401076 T C ACVR1C Missense_Mutation p.Q275R 0.14 tolerated(0.1) benign(0.186) TCGA-53-7626-01 2 163215621 163215621 C G GCA Missense_Mutation p.F174L 0.08 tolerated(0.79) benign(0.012) TCGA-53-7626-01 2 163693067 163693067 A T KCNH7 Missense_Mutation p.V96D 0.15 deleterious(0) possibly_damaging(0.904) TCGA-53-7626-01 2 165947492 165947492 G T SCN3A Missense_Mutation p.P1724H 0.18 deleterious(0) probably_damaging(1) TCGA-53-7626-01 2 166179956 166179956 C A SCN2A Silent p.V654V 0.25 TCGA-53-7626-01 2 167262212 167262212 G A SCN7A Nonsense_Mutation p.R1643* 0.09 TCGA-53-7626-01 2 168099116 168099116 C T XIRP2 Missense_Mutation p.S405L 0.19 possibly_damaging(0.487) TCGA-53-7626-01 2 170134449 170134450 - A LRP2 Frame_Shift_Ins p.S527Lfs*11 0.18 TCGA-53-7626-01 2 174085998 174085998 G T MLTK Intron 0.13 TCGA-53-7626-01 2 176973687 176973687 C A HOXD11 Silent p.I278I 0.13 TCGA-53-7626-01 2 176973688 176973688 C A HOXD11 Missense_Mutation p.R279S 0.12 deleterious(0) probably_damaging(1) TCGA-53-7626-01 2 179416521 179416521 A T TTN Missense_Mutation p.I30369N 0.09 TCGA-53-7626-01 2 179430521 179430521 G A TTN Missense_Mutation p.P26780S 0.22 TCGA-53-7626-01 2 179451991 179451991 A G TTN Missense_Mutation p.V21316A 0.24 TCGA-53-7626-01 2 179546109 179546109 G T TTN Missense_Mutation p.P11081T 0.19 TCGA-53-7626-01 2 179596138 179596138 G A TTN Silent p.A5785A 0.21 TCGA-53-7626-01 2 179644746 179644746 C A TTN Missense_Mutation p.R1237I 0.16 TCGA-53-7626-01 2 185800553 185800553 G C ZNF804A Missense_Mutation p.V144L 0.21 deleterious(0) probably_damaging(0.956) TCGA-53-7626-01 2 185801970 185801970 C G ZNF804A Missense_Mutation p.T616S 0.20 tolerated(0.5) benign(0.034) TCGA-53-7626-01 2 185801983 185801983 G T ZNF804A Missense_Mutation p.M620I 0.23 tolerated(0.35) possibly_damaging(0.775) TCGA-53-7626-01 2 18765484 18765484 G C NT5C1B Missense_Mutation p.S314C 0.20 deleterious(0) probably_damaging(0.993) TCGA-53-7626-01 2 207953210 207953210 T C KLF7 Missense_Mutation p.K277E 0.15 deleterious(0) probably_damaging(0.999) TCGA-53-7626-01 2 210650811 210650811 C A UNC80 Missense_Mutation p.L208M 0.19 probably_damaging(0.972) TCGA-53-7626-01 2 21225982 21225982 C T APOB Silent p.L4104L 0.18 TCGA-53-7626-01 2 212530153 212530153 C A ERBB4 Missense_Mutation p.C589F 0.10 deleterious(0) probably_damaging(0.999) TCGA-53-7626-01 2 215884272 215884272 A T ABCA12 Missense_Mutation p.N512K 0.19 tolerated(0.55) benign(0.066) TCGA-53-7626-01 2 227876937 227876937 A C COL4A4 Silent p.R1431R 0.14 TCGA-53-7626-01 2 231371124 231371124 A T SP100 Silent p.I659I 0.17 TCGA-53-7626-01 2 239147827 239147827 C T HES6 Missense_Mutation p.E106K 0.15 deleterious(0) probably_damaging(0.998) TCGA-53-7626-01 2 28531167 28531167 G A BRE Intron 0.22 TCGA-53-7626-01 2 54858128 54858128 C T SPTBN1 Nonsense_Mutation p.Q982* 0.21 TCGA-53-7626-01 2 63631262 63631262 C G WDPCP Missense_Mutation p.K452N 0.18 tolerated(0.48) benign(0.026) TCGA-53-7626-01 2 74042529 74042529 C A C2orf78 Silent p.P393P 0.32 TCGA-53-7626-01 2 77745779 77745779 G T LRRTM4 Missense_Mutation p.P406T 0.16 tolerated(0.25) benign(0.002) TCGA-53-7626-01 2 79348783 79348783 C A REG1A Missense_Mutation p.R54S 0.17 tolerated(0.24) possibly_damaging(0.553) TCGA-53-7626-01 2 79350017 79350017 G T REG1A Missense_Mutation p.W124C 0.20 deleterious(0) probably_damaging(0.988) TCGA-53-7626-01 2 90211750 90211750 C A IGKV3D-11 Missense_Mutation p.P4Q 0.13 tolerated(0.42) benign(0.3) TCGA-53-7626-01 2 90211751 90211751 A G IGKV3D-11 Silent p.P4P 0.11 TCGA-53-7626-01 2 96952157 96952157 T C SNRNP200 Missense_Mutation p.T1299A 0.19 deleterious(0.02) possibly_damaging(0.905) TCGA-53-7626-01 3 10140527 10140527 G T FANCD2 Missense_Mutation p.G1437C 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.875) TCGA-53-7626-01 3 10413663 10413663 A T ATP2B2 Missense_Mutation p.C497S 0.31 deleterious(0.01) benign(0.27) TCGA-53-7626-01 3 109050872 109050872 C A DPPA4 Missense_Mutation p.C62F 0.09 tolerated(0.12) probably_damaging(0.919) TCGA-53-7626-01 3 121350993 121350993 C A HCLS1 Missense_Mutation p.V427L 0.14 tolerated(0.68) benign(0.097) TCGA-53-7626-01 3 126180858 126180858 C A ZXDC Silent p.L549L 0.09 TCGA-53-7626-01 3 133524720 133524720 G A SRPRB Missense_Mutation p.A10T 0.15 tolerated_low_confidence(0.33) benign(0.042) TCGA-53-7626-01 3 140409921 140409921 G A TRIM42 Missense_Mutation p.D658N 0.12 tolerated(0.75) probably_damaging(0.953) TCGA-53-7626-01 3 148459034 148459034 C A AGTR1 Missense_Mutation p.A71E 0.23 deleterious(0) probably_damaging(1) TCGA-53-7626-01 3 149087571 149087571 A C TM4SF1 3'UTR 0.07 TCGA-53-7626-01 3 150396332 150396332 C A FAM194A Missense_Mutation p.R374L 0.23 tolerated(0.23) benign(0.242) TCGA-53-7626-01 3 154145425 154145425 G T GPR149 Missense_Mutation p.L352M 0.21 deleterious(0.01) probably_damaging(0.989) TCGA-53-7626-01 3 186510311 186510311 C T RFC4 Missense_Mutation p.A215T 0.21 deleterious(0) benign(0.005) TCGA-53-7626-01 3 186953898 186953898 C A MASP1 Silent p.L587L 0.09 TCGA-53-7626-01 3 19389436 19389436 G T KCNH8 Missense_Mutation p.V264L 0.23 deleterious(0) probably_damaging(0.984) TCGA-53-7626-01 3 35835431 35835431 G T ARPP21 Missense_Mutation p.G808V 0.37 deleterious_low_confidence(0) possibly_damaging(0.543) TCGA-53-7626-01 3 56627033 56627033 G C CCDC66 Silent p.V324V 0.13 TCGA-53-7626-01 3 67546341 67546341 C A SUCLG2 Missense_Mutation p.A315S 0.33 tolerated(0.06) probably_damaging(0.998) TCGA-53-7626-01 3 71804195 71804195 G T GPR27 Missense_Mutation p.G332V 0.31 tolerated(0.18) probably_damaging(0.92) TCGA-53-7626-01 3 73433092 73433092 C G PDZRN3 Silent p.A875A 0.13 TCGA-53-7626-01 3 74347277 74347277 C A CNTN3 Silent p.G744G 0.20 TCGA-53-7626-01 3 86010741 86010741 G T CADM2 Missense_Mutation p.C298F 0.11 deleterious(0) probably_damaging(1) TCGA-53-7626-01 4 103730964 103730964 G A UBE2D3 Missense_Mutation p.P27S 0.14 deleterious_low_confidence(0.01) probably_damaging(0.938) TCGA-53-7626-01 4 104512718 104512718 G T TACR3 Silent p.V337V 0.13 TCGA-53-7626-01 4 104640706 104640706 G A TACR3 Nonsense_Mutation p.Q43* 0.15 TCGA-53-7626-01 4 113569038 113569038 A G LARP7 Intron 0.16 TCGA-53-7626-01 4 114278909 114278909 G T ANK2 Missense_Mutation p.W3045C 0.23 probably_damaging(1) TCGA-53-7626-01 4 129043061 129043061 G T LARP1B Missense_Mutation p.L414F 0.18 deleterious(0.03) benign(0.049) TCGA-53-7626-01 4 138451383 138451383 T A PCDH18 Silent p.I620I 0.22 TCGA-53-7626-01 4 142643115 142643115 G T IL15 Missense_Mutation p.W50L 0.13 deleterious(0) probably_damaging(1) TCGA-53-7626-01 4 155191131 155191131 A G DCHS2 Silent p.P1711P 0.16 TCGA-53-7626-01 4 156136118 156136118 G C NPY2R Missense_Mutation p.E343Q 0.07 tolerated(0.36) benign(0.003) TCGA-53-7626-01 4 162697220 162697220 T G FSTL5 Missense_Mutation p.K139T 0.09 tolerated(0.84) benign(0.005) TCGA-53-7626-01 4 164393100 164393100 A T TKTL2 Missense_Mutation p.V596E 0.19 deleterious(0.04) possibly_damaging(0.866) TCGA-53-7626-01 4 169158497 169158497 C A DDX60 Missense_Mutation p.V1451F 0.24 deleterious(0) possibly_damaging(0.594) TCGA-53-7626-01 4 170523765 170523765 C G NEK1 Missense_Mutation p.R6T 0.13 deleterious(0.03) benign(0.092) TCGA-53-7626-01 4 175898063 175898063 G T ADAM29 Missense_Mutation p.D463Y 0.10 deleterious(0) probably_damaging(1) TCGA-53-7626-01 4 185678789 185678789 C A ACSL1 Missense_Mutation p.Q652H 0.23 deleterious(0) possibly_damaging(0.653) TCGA-53-7626-01 4 186998018 186998018 T C TLR3 Missense_Mutation p.V82A 0.17 tolerated(1) benign(0.013) TCGA-53-7626-01 4 187539651 187539651 C A FAT1 Nonsense_Mutation p.E2697* 0.10 TCGA-53-7626-01 4 25256887 25256887 G T PI4K2B Missense_Mutation p.K208N 0.29 deleterious(0.03) benign(0.213) TCGA-53-7626-01 4 26638832 26638832 G T TBC1D19 Splice_Site p.X99_splice 0.32 TCGA-53-7626-01 4 30726066 30726066 C A PCDH7 Missense_Mutation p.H1008N 0.27 deleterious(0) possibly_damaging(0.501) TCGA-53-7626-01 4 39868565 39868565 T A PDS5A Missense_Mutation p.Q853L 0.21 tolerated(0.19) benign(0.011) TCGA-53-7626-01 4 46737207 46737207 C A COX7B2 Translation_Start_Site p.M1? 0.22 tolerated(0.08) possibly_damaging(0.483) TCGA-53-7626-01 4 48032142 48032142 G A NIPAL1 Missense_Mutation p.G107S 0.16 deleterious(0) probably_damaging(1) TCGA-53-7626-01 4 48854030 48854030 G T OCIAD1 Intron 0.21 TCGA-53-7626-01 4 71024281 71024281 C A C4orf40 Silent p.L104L 0.20 TCGA-53-7626-01 4 71347308 71347308 G C MUC7 Missense_Mutation p.A283P 0.22 tolerated_low_confidence(0.07) unknown(0) TCGA-53-7626-01 4 82096055 82096055 G T PRKG2 Missense_Mutation p.P174T 0.20 tolerated(0.74) benign(0.114) TCGA-53-7626-01 4 8607877 8607877 A G CPZ Missense_Mutation p.M291V 0.19 deleterious(0.01) possibly_damaging(0.696) TCGA-53-7626-01 4 86491874 86491874 G T ARHGAP24 Missense_Mutation p.L60F 0.22 tolerated(0.15) possibly_damaging(0.659) TCGA-53-7626-01 4 86491875 86491875 G T ARHGAP24 Splice_Site p.X60_splice 0.18 TCGA-53-7626-01 5 107559923 107559923 C A FBXL17 Missense_Mutation p.D505Y 0.36 deleterious(0) probably_damaging(0.98) TCGA-53-7626-01 5 110814169 110814169 C A CAMK4 Silent p.P264P 0.30 TCGA-53-7626-01 5 112849603 112849603 C G YTHDC2 Missense_Mutation p.P4R 0.33 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-53-7626-01 5 122927092 122927092 A T CSNK1G3 Missense_Mutation p.Q357L 0.15 tolerated(0.12) benign(0.001) TCGA-53-7626-01 5 128958013 128958013 C A ADAMTS19 Missense_Mutation p.P575Q 0.23 tolerated(0.09) benign(0.048) TCGA-53-7626-01 5 133509710 133509710 G A SKP1 Missense_Mutation p.P2S 0.23 tolerated(0.2) possibly_damaging(0.713) TCGA-53-7626-01 5 140189029 140189029 C T PCDHA4 Nonsense_Mutation p.Q753* 0.26 TCGA-53-7626-01 5 140615563 140615563 C A PCDHB18 RNA 0.27 TCGA-53-7626-01 5 140725926 140725926 G A PCDHGA3 Missense_Mutation p.A776T 0.25 deleterious_low_confidence(0.04) benign(0.206) TCGA-53-7626-01 5 148626046 148626046 G T ABLIM3 Silent p.V496V 0.31 TCGA-53-7626-01 5 150858985 150858985 G T SLC36A1 Missense_Mutation p.R365L 0.19 deleterious(0.04) benign(0.037) TCGA-53-7626-01 5 16067856 16067856 G T MARCH11 Silent p.R311R 0.18 TCGA-53-7626-01 5 26881683 26881683 A T CDH9 Silent p.P644P 0.09 TCGA-53-7626-01 5 31323551 31323551 C A CDH6 3'UTR 0.36 TCGA-53-7626-01 5 33616098 33616098 C A ADAMTS12 Silent p.L741L 0.13 TCGA-53-7626-01 5 35072674 35072674 C G PRLR Intron 0.13 TCGA-53-7626-01 5 36171762 36171762 G T SKP2 Silent p.V276V 0.37 TCGA-53-7626-01 5 36270074 36270074 G T RANBP3L Missense_Mutation p.L57M 0.27 deleterious(0.02) possibly_damaging(0.67) TCGA-53-7626-01 5 40947812 40947812 C T C7 Missense_Mutation p.L283F 0.36 deleterious(0) probably_damaging(0.967) TCGA-53-7626-01 5 40958249 40958249 C T C7 Missense_Mutation p.P459S 0.20 deleterious(0) probably_damaging(0.927) TCGA-53-7626-01 5 41004995 41004995 G T MROH2B Missense_Mutation p.H1298N 0.23 tolerated(0.14) benign(0.009) TCGA-53-7626-01 5 52371050 52371050 G T ITGA2 Splice_Site p.X914_splice 0.28 TCGA-53-7626-01 5 54674315 54674315 G T SKIV2L2 Splice_Site p.X661_splice 0.17 TCGA-53-7626-01 5 82836404 82836404 G C VCAN Missense_Mutation p.E2528Q 0.17 deleterious(0.02) possibly_damaging(0.716) TCGA-53-7626-01 5 9202174 9202174 G A SEMA5A Silent p.R275R 0.33 TCGA-53-7626-01 6 102503354 102503354 G T GRIK2 Missense_Mutation p.G821C 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-53-7626-01 6 123122474 123122474 C A SMPDL3A Missense_Mutation p.T164N 0.29 tolerated(0.24) benign(0.151) TCGA-53-7626-01 6 128312532 128312532 G A PTPRK Silent p.P968P 0.34 TCGA-53-7626-01 6 12934208 12934208 G T PHACTR1 3'UTR 0.50 TCGA-53-7626-01 6 129636648 129636648 C T LAMA2 Silent p.L1195L 0.29 TCGA-53-7626-01 6 132859864 132859864 G T TAAR9 Missense_Mutation p.V146L 0.27 tolerated(0.06) benign(0.004) TCGA-53-7626-01 6 158014053 158014053 G C ZDHHC14 Missense_Mutation p.R147P 0.29 deleterious(0.01) possibly_damaging(0.751) TCGA-53-7626-01 6 160969685 160969685 C T LPA Silent p.L1660L 0.26 TCGA-53-7626-01 6 18258558 18258558 C G DEK Missense_Mutation p.R75T 0.11 tolerated(0.11) benign(0.039) TCGA-53-7626-01 6 32036389 32036389 G A TNXB Missense_Mutation p.P2000S 0.27 probably_damaging(0.997) TCGA-53-7626-01 6 49696489 49696489 C A CRISP3 Missense_Mutation p.R254M 0.24 deleterious(0.01) benign(0.022) TCGA-53-7626-01 6 52657758 52657758 G T GSTA1 Missense_Mutation p.L148I 0.27 deleterious(0.01) possibly_damaging(0.797) TCGA-53-7626-01 6 69349230 69349230 C A BAI3 Silent p.P221P 0.38 TCGA-53-7626-01 6 76599836 76599836 G T MYO6 Missense_Mutation p.E907D 0.24 tolerated(0.51) unknown(0) TCGA-53-7626-01 6 76599837 76599837 G T MYO6 Nonsense_Mutation p.E908* 0.24 TCGA-53-7626-01 6 99854038 99854038 C G PNISR Missense_Mutation p.D291H 0.33 deleterious(0) probably_damaging(0.999) TCGA-53-7626-01 7 100679317 100679317 C G MUC17 Silent p.V1540V 0.20 TCGA-53-7626-01 7 100682907 100682907 A T MUC17 Missense_Mutation p.E2737V 0.17 unknown(0) TCGA-53-7626-01 7 103290776 103290776 C A RELN Missense_Mutation p.R649S 0.27 deleterious(0) probably_damaging(0.989) TCGA-53-7626-01 7 104719376 104719376 G T KMT2E Missense_Mutation p.R405L 0.23 deleterious(0) possibly_damaging(0.569) TCGA-53-7626-01 7 107575913 107575913 C G LAMB1 Missense_Mutation p.D1379H 0.10 deleterious(0.03) probably_damaging(0.973) TCGA-53-7626-01 7 107580657 107580657 G T LAMB1 Missense_Mutation p.H1180N 0.15 deleterious(0) probably_damaging(1) TCGA-53-7626-01 7 108128275 108128275 C G PNPLA8 Missense_Mutation p.W602C 0.18 tolerated(0.06) probably_damaging(0.993) TCGA-53-7626-01 7 120935629 120935629 C T CPED1 Missense_Mutation p.H1002Y 0.19 deleterious(0) possibly_damaging(0.808) TCGA-53-7626-01 7 124503463 124503463 C A POT1 Missense_Mutation p.D163Y 0.17 deleterious(0) probably_damaging(0.998) TCGA-53-7626-01 7 133160178 133160178 G A EXOC4 Missense_Mutation p.A427T 0.19 tolerated(0.16) benign(0.046) TCGA-53-7626-01 7 134613555 134613555 G A CALD1 Missense_Mutation p.R41Q 0.22 deleterious(0.03) unknown(0) TCGA-53-7626-01 7 141478324 141478324 C T TAS2R4 Silent p.A12A 0.19 TCGA-53-7626-01 7 141619587 141619587 G C OR9A4 Silent p.G304G 0.16 TCGA-53-7626-01 7 142168408 142168408 C G TRBV5-4 Silent p.S105S 0.11 TCGA-53-7626-01 7 142749748 142749748 C A OR6V1 Missense_Mutation p.S104Y 0.16 tolerated(0.06) probably_damaging(0.971) TCGA-53-7626-01 7 143748240 143748240 G T OR2A5 Missense_Mutation p.G249V 0.10 deleterious(0.05) benign(0.367) TCGA-53-7626-01 7 150752397 150752397 T A CDK5 Missense_Mutation p.I183F 0.23 deleterious(0) probably_damaging(0.991) TCGA-53-7626-01 7 151856020 151856020 C G KMT2C Missense_Mutation p.K3866N 0.10 probably_damaging(0.999) TCGA-53-7626-01 7 151945133 151945133 T A KMT2C Missense_Mutation p.M796L 0.05 benign(0.001) TCGA-53-7626-01 7 31867932 31867932 G T PDE1C Missense_Mutation p.S480Y 0.18 deleterious(0) probably_damaging(0.989) TCGA-53-7626-01 7 38857421 38857421 T A VPS41 Missense_Mutation p.K149M 0.26 deleterious(0) possibly_damaging(0.497) TCGA-53-7626-01 7 66240365 66240365 G A KCTD7 Missense_Mutation p.V111I 0.19 tolerated(0.12) benign(0.021) TCGA-53-7626-01 7 72657661 72657661 C A GTF2IRD2P1 RNA 0.21 TCGA-53-7626-01 7 90014350 90014350 A T GTPBP10 Missense_Mutation p.Q349L 0.18 tolerated(0.35) benign(0.001) TCGA-53-7626-01 7 92733058 92733058 C A SAMD9 Missense_Mutation p.A785S 0.18 tolerated(0.08) benign(0.017) TCGA-53-7626-01 8 100148930 100148930 G T VPS13B Missense_Mutation p.G534V 0.18 deleterious(0) probably_damaging(0.972) TCGA-53-7626-01 8 100182324 100182324 C T VPS13B Missense_Mutation p.P756S 0.08 tolerated(0.14) probably_damaging(0.968) TCGA-53-7626-01 8 10467395 10467395 C T RP1L1 Missense_Mutation p.V1405I 0.23 unknown(0) TCGA-53-7626-01 8 124664033 124664033 G T KLHL38 Missense_Mutation p.S378R 0.14 deleterious(0) possibly_damaging(0.908) TCGA-53-7626-01 8 133837560 133837560 A T PHF20L1 Missense_Mutation p.H563L 0.23 tolerated(0.27) benign(0.196) TCGA-53-7626-01 8 134072432 134072432 G A SLA Missense_Mutation p.P32S 0.23 tolerated_low_confidence(1) benign(0.001) TCGA-53-7626-01 8 35608192 35608192 T A UNC5D Nonsense_Mutation p.Y676* 0.14 TCGA-53-7626-01 8 37720365 37720365 G A RAB11FIP1 3'UTR 0.25 TCGA-53-7626-01 8 51314850 51314850 G T SNTG1 Missense_Mutation p.L36F 0.16 deleterious(0) probably_damaging(1) TCGA-53-7626-01 8 67790844 67790844 A G MCMDC2 Missense_Mutation p.T173A 0.20 deleterious(0.01) possibly_damaging(0.634) TCGA-53-7626-01 8 70539471 70539471 T C SULF1 Missense_Mutation p.I626T 0.11 deleterious(0) possibly_damaging(0.672) TCGA-53-7626-01 8 70667841 70667841 A C SLCO5A1 Missense_Mutation p.F359C 0.16 deleterious(0) benign(0.098) TCGA-53-7626-01 8 77765873 77765873 G T ZFHX4 Missense_Mutation p.R2239M 0.46 probably_damaging(0.979) TCGA-53-7626-01 8 92998434 92998434 G T RUNX1T1 Silent p.A410A 0.34 TCGA-53-7626-01 9 100971254 100971254 C - TBC1D2 Frame_Shift_Del p.A616Pfs*41 0.21 TCGA-53-7626-01 9 103092397 103092397 T A TEX10 Missense_Mutation p.L435F 0.22 deleterious(0.01) probably_damaging(0.98) TCGA-53-7626-01 9 105767379 105767379 G A CYLC2 Missense_Mutation p.D156N 0.15 tolerated(0.23) unknown(0) TCGA-53-7626-01 9 107289036 107289036 C A OR13C4 Missense_Mutation p.G152V 0.15 deleterious(0) probably_damaging(0.99) TCGA-53-7626-01 9 107289037 107289037 C A OR13C4 Missense_Mutation p.G152C 0.15 tolerated(0.05) probably_damaging(0.999) TCGA-53-7626-01 9 107595033 107595033 T C ABCA1 Missense_Mutation p.D444G 0.21 tolerated(0.53) benign(0) TCGA-53-7626-01 9 120470921 120470921 C T TLR4 Silent p.N58N 0.13 TCGA-53-7626-01 9 125552135 125552135 C A OR5C1 Silent p.T308T 0.16 TCGA-53-7626-01 9 130984836 130984836 C G DNM1 Missense_Mutation p.N363K 0.14 deleterious(0.01) possibly_damaging(0.846) TCGA-53-7626-01 9 131568291 131568291 A G TBC1D13 Missense_Mutation p.M358V 0.25 deleterious(0) probably_damaging(0.926) TCGA-53-7626-01 9 136320478 136320478 T A ADAMTS13 Silent p.P1107P 0.14 TCGA-53-7626-01 9 138719314 138719314 C T CAMSAP1 Missense_Mutation p.V388M 0.22 tolerated(0.14) benign(0.172) TCGA-53-7626-01 9 27185554 27185554 C A TEK Missense_Mutation p.D418E 0.21 deleterious(0.03) benign(0.363) TCGA-53-7626-01 9 32500928 32500928 T A DDX58 Missense_Mutation p.Q39L 0.19 deleterious(0) possibly_damaging(0.722) TCGA-53-7626-01 9 32630111 32630111 C A TAF1L Missense_Mutation p.G1823W 0.15 benign(0.003) TCGA-53-7626-01 9 32630112 32630112 A T TAF1L Missense_Mutation p.D1822E 0.15 benign(0) TCGA-53-7626-01 9 37745609 37745609 C A FRMPD1 Missense_Mutation p.Q1194K 0.10 tolerated_low_confidence(0.14) benign(0.004) TCGA-53-7626-01 9 77357520 77357520 C A TRPM6 Missense_Mutation p.M1719I 0.20 deleterious(0) possibly_damaging(0.832) TCGA-53-7626-01 9 77598701 77598701 C T C9orf41 Silent p.V404V 0.14 TCGA-53-7626-01 9 80916926 80916926 G T PSAT1 Missense_Mutation p.V60L 0.28 tolerated(1) benign(0.001) TCGA-53-7626-01 9 84605877 84605877 T A SPATA31D1 Silent p.S164S 0.12 TCGA-53-7626-01 X 101822111 101822111 G T NXF4 RNA 0.36 TCGA-53-7626-01 X 111697901 111697901 G T ZCCHC16 5'UTR 0.11 TCGA-53-7626-01 X 118767439 118767439 C T SEPT6 Missense_Mutation p.E325K 0.33 deleterious(0.03) probably_damaging(0.991) TCGA-53-7626-01 X 12939365 12939365 A T TLR8 Missense_Mutation p.S736C 0.10 tolerated(0.18) probably_damaging(0.926) TCGA-53-7626-01 X 142795247 142795247 G T SPANXN2 Missense_Mutation p.S144Y 0.30 tolerated(1) unknown(0) TCGA-53-7626-01 X 147744018 147744018 C G AFF2 Missense_Mutation p.S257C 0.05 deleterious(0) probably_damaging(0.997) TCGA-53-7626-01 X 150911608 150911608 G A CNGA2 Silent p.L211L 0.22 TCGA-53-7626-01 X 21996187 21996187 G T SMS Missense_Mutation p.L205F 0.19 tolerated(0.06) possibly_damaging(0.695) TCGA-53-7626-01 X 34149860 34149860 G T FAM47A Missense_Mutation p.P179H 0.17 tolerated(0.57) possibly_damaging(0.76) TCGA-53-7626-01 X 37028698 37028698 C T FAM47C Missense_Mutation p.R739C 0.23 tolerated(0.1) probably_damaging(0.942) TCGA-53-7626-01 X 40458862 40458862 C T ATP6AP2 Silent p.L203L 0.08 TCGA-53-7626-01 X 46917717 46917717 C G JADE3 Missense_Mutation p.S570R 0.14 deleterious_low_confidence(0.05) benign(0.273) TCGA-53-7626-01 X 52844149 52844149 C A XAGE5 Missense_Mutation p.S71Y 0.18 deleterious(0.02) probably_damaging(0.948) TCGA-53-7626-01 X 54949763 54949763 G T TRO Missense_Mutation p.K266N 0.16 deleterious(0) unknown(0) TCGA-53-7626-01 X 56296679 56296679 C A KLF8 Missense_Mutation p.Q275K 0.13 tolerated(0.23) probably_damaging(0.918) TCGA-53-7626-01 X 57620764 57620764 A T ZXDB Silent p.V761V 0.12 TCGA-53-7626-01 X 64722958 64722958 C G ZC3H12B Missense_Mutation p.Q794E 0.09 deleterious(0) probably_damaging(0.986) TCGA-53-7626-01 X 69774579 69774579 C A TEX11 Missense_Mutation p.D753Y 0.27 deleterious(0) probably_damaging(0.949) TCGA-53-7626-01 X 70465222 70465222 G C ZMYM3 Missense_Mutation p.P992A 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-53-7626-01 X 71840645 71840645 G C PHKA1 Missense_Mutation p.F689L 0.13 tolerated(0.21) benign(0) TCGA-53-7626-01 X 73061259 73061259 G A XIST RNA 0.20 TCGA-53-7626-01 X 76845317 76845317 G C ATRX Silent p.P2068P 0.10 TCGA-53-7626-01 X 77912566 77912566 G T ZCCHC5 Missense_Mutation p.P451H 0.20 deleterious(0) probably_damaging(0.997) TCGA-53-7626-01 X 77912567 77912567 G T ZCCHC5 Missense_Mutation p.P451T 0.19 deleterious(0.01) probably_damaging(0.984) TCGA-53-7626-01 X 79978262 79978262 T A BRWD3 Missense_Mutation p.T559S 0.27 tolerated(0.09) possibly_damaging(0.463) TCGA-53-7626-01 X 84363384 84363384 G A SATL1 Silent p.G197G 0.19 TCGA-53-7813-01 10 129911758 129911758 C A MKI67 Missense_Mutation p.G530V 0.32 deleterious(0) probably_damaging(0.999) TCGA-53-7813-01 10 17087120 17087120 G T CUBN Nonsense_Mutation p.Y1186* 0.24 TCGA-53-7813-01 10 55755437 55755437 G C PCDH15 Missense_Mutation p.T947R 0.21 deleterious(0) possibly_damaging(0.827) TCGA-53-7813-01 10 70980191 70980191 A T HKDC1 5'UTR 0.26 TCGA-53-7813-01 10 7230597 7230597 C T SFMBT2 Silent p.T599T 0.26 TCGA-53-7813-01 10 98145954 98145954 A T TLL2 Missense_Mutation p.I624N 0.21 deleterious(0.01) possibly_damaging(0.838) TCGA-53-7813-01 11 102401431 102401431 T C MMP7 Translation_Start_Site p.M1? 0.31 deleterious(0.02) benign(0.006) TCGA-53-7813-01 11 108128207 108128208 - T ATM Frame_Shift_Ins p.S751Ffs*14 0.13 TCGA-53-7813-01 11 108163369 108163369 C A ATM Nonsense_Mutation p.S1487* 0.30 TCGA-53-7813-01 11 118984560 118984560 A G C2CD2L Splice_Site p.X497_splice 0.24 TCGA-53-7813-01 11 118984562 118984562 C T C2CD2L Missense_Mutation p.P497L 0.23 tolerated(0.34) benign(0.117) TCGA-53-7813-01 11 30601847 30601847 G A MPPED2 Missense_Mutation p.A25V 0.27 deleterious(0.01) possibly_damaging(0.474) TCGA-53-7813-01 11 30601848 30601848 C A MPPED2 Missense_Mutation p.A25S 0.26 deleterious(0.01) benign(0.397) TCGA-53-7813-01 11 58275029 58275029 C A OR5B21 Missense_Mutation p.A184S 0.32 tolerated_low_confidence(0.1) benign(0.027) TCGA-53-7813-01 11 58391799 58391799 G CC CNTF Frame_Shift_Ins p.R136Pfs*3 0.20 TCGA-53-7813-01 11 5969311 5969311 T A OR56A3 Nonsense_Mutation p.C245* 0.28 TCGA-53-7813-01 11 63312096 63312096 A G RARRES3 Missense_Mutation p.E41G 0.23 deleterious(0.02) benign(0.414) TCGA-53-7813-01 11 6637975 6637975 C G TPP1 Missense_Mutation p.R268P 0.16 tolerated(0.16) benign(0.005) TCGA-53-7813-01 12 106857254 106857254 A G POLR3B Splice_Site p.X857_splice 0.23 TCGA-53-7813-01 12 122190118 122190118 C T TMEM120B Silent p.V150V 0.17 TCGA-53-7813-01 12 22631320 22631320 T A C2CD5 Missense_Mutation p.H610L 0.24 tolerated(0.15) benign(0.046) TCGA-53-7813-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.17 deleterious(0.02) possibly_damaging(0.773) TCGA-53-7813-01 12 51590712 51590712 T A POU6F1 Splice_Site 0.17 TCGA-53-7813-01 12 56380786 56380786 G T RAB5B Missense_Mutation p.Q14H 0.25 tolerated(0.13) possibly_damaging(0.784) TCGA-53-7813-01 12 64202608 64202608 G T TMEM5 Silent p.V356V 0.25 TCGA-53-7813-01 12 83444707 83444707 G T TMTC2 Missense_Mutation p.R726L 0.22 deleterious(0) probably_damaging(0.989) TCGA-53-7813-01 13 39587831 39587831 C A PROSER1 Missense_Mutation p.A520S 0.36 tolerated_low_confidence(0.43) benign(0.079) TCGA-53-7813-01 13 94482699 94482699 C A GPC6 Silent p.P204P 0.26 TCGA-53-7813-01 14 105416061 105416061 C A AHNAK2 Silent p.V1909V 0.06 TCGA-53-7813-01 14 20249076 20249076 A T OR4M1 Missense_Mutation p.M199L 0.32 deleterious(0.02) possibly_damaging(0.734) TCGA-53-7813-01 14 22192122 22192122 G T TRAV3 5'UTR 0.30 TCGA-53-7813-01 14 24785514 24785514 C A LTB4R Silent p.T219T 0.24 TCGA-53-7813-01 14 34269442 34269442 C A NPAS3 Silent p.A643A 0.49 TCGA-53-7813-01 14 42356845 42356845 C A LRFN5 Missense_Mutation p.N339K 0.37 deleterious(0) probably_damaging(0.983) TCGA-53-7813-01 14 53619303 53619303 A T DDHD1 Missense_Mutation p.Y172N 0.15 deleterious(0) probably_damaging(1) TCGA-53-7813-01 14 70713810 70713810 C A ADAM21P1 RNA 0.19 TCGA-53-7813-01 14 81943264 81943264 C A SEL1L 3'UTR 0.25 TCGA-53-7813-01 15 24923826 24923826 G T NPAP1 Missense_Mutation p.G938C 0.13 deleterious(0.01) probably_damaging(0.993) TCGA-53-7813-01 15 81429038 81429038 G A C15orf26 Missense_Mutation p.S114N 0.10 deleterious(0) possibly_damaging(0.904) TCGA-53-7813-01 15 88679802 88679802 C A NTRK3 Missense_Mutation p.V221L 0.14 tolerated(0.21) benign(0.223) TCGA-53-7813-01 15 89382237 89382237 C A ACAN Silent p.G138G 0.19 TCGA-53-7813-01 16 23718096 23718096 G T ERN2 Missense_Mutation p.R204S 0.19 tolerated(0.4) benign(0.362) TCGA-53-7813-01 16 30020381 30020381 C G DOC2A Missense_Mutation p.V155L 0.10 deleterious(0.03) benign(0.26) TCGA-53-7813-01 16 31384586 31384586 G T ITGAX Missense_Mutation p.V795L 0.17 deleterious(0) probably_damaging(0.992) TCGA-53-7813-01 16 31474186 31474186 C G ARMC5 Missense_Mutation p.P440A 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-53-7813-01 16 4960865 4960865 C T PPL Missense_Mutation p.A50T 0.09 tolerated(0.3) benign(0.019) TCGA-53-7813-01 16 62055216 62055216 G A CDH8 Missense_Mutation p.P31L 0.10 tolerated(0.79) probably_damaging(0.982) TCGA-53-7813-01 16 71913844 71913844 G A ZNF821 Silent p.S2S 0.09 TCGA-53-7813-01 16 77369751 77369751 G T ADAMTS18 Silent p.P587P 0.36 TCGA-53-7813-01 16 7759094 7759094 C A RBFOX1 Missense_Mutation p.H365Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-53-7813-01 16 89178532 89178532 G T ACSF3 Silent p.P285P 0.28 TCGA-53-7813-01 17 19186997 19186997 G T EPN2 Missense_Mutation p.A189S 0.15 tolerated(1) benign(0.099) TCGA-53-7813-01 17 35378272 35378273 - A AATF Frame_Shift_Ins p.V505Sfs*3 0.43 TCGA-53-7813-01 17 39633315 39633315 C T KRT35 Missense_Mutation p.R454Q 0.25 tolerated(0.07) probably_damaging(0.992) TCGA-53-7813-01 17 55028031 55028031 C T COIL Missense_Mutation p.C191Y 0.39 tolerated(0.42) benign(0.015) TCGA-53-7813-01 17 73738716 73738716 G T ITGB4 Missense_Mutation p.V946L 0.19 deleterious(0) probably_damaging(0.992) TCGA-53-7813-01 17 80210968 80210968 C A CSNK1D Missense_Mutation p.Q163H 0.14 deleterious_low_confidence(0.05) possibly_damaging(0.767) TCGA-53-7813-01 17 8193136 8193136 A G RANGRF Missense_Mutation p.D148G 0.16 tolerated(0.41) benign(0) TCGA-53-7813-01 18 13885199 13885199 C T MC2R Missense_Mutation p.D107N 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-53-7813-01 18 21736900 21736900 C A CABYR Intron 0.33 TCGA-53-7813-01 18 23619334 23619334 T C SS18 Missense_Mutation p.M232V 0.25 deleterious_low_confidence(0.01) benign(0.004) TCGA-53-7813-01 18 6873574 6873574 G T ARHGAP28 Splice_Site p.X215_splice 0.13 TCGA-53-7813-01 19 1207090 1207091 - A STK11 Nonsense_Mutation p.Y60* 0.30 TCGA-53-7813-01 19 34263626 34263626 C T CHST8 Silent p.F311F 0.09 TCGA-53-7813-01 19 37646813 37646813 C T CTC-454I21.3 Silent p.K70K 0.22 TCGA-53-7813-01 19 40148520 40148520 C A LGALS16 Intron 0.21 TCGA-53-7813-01 19 44792290 44792290 C T ZNF235 Missense_Mutation p.C433Y 0.23 deleterious(0.02) probably_damaging(1) TCGA-53-7813-01 19 50208359 50208359 G T CPT1C Missense_Mutation p.Q289H 0.23 deleterious(0.03) probably_damaging(0.954) TCGA-53-7813-01 19 52033113 52033113 G T SIGLEC6 Missense_Mutation p.L293M 0.24 deleterious(0) probably_damaging(0.992) TCGA-53-7813-01 19 54080559 54080559 G A ZNF331 Missense_Mutation p.G249R 0.31 tolerated(0.05) probably_damaging(1) TCGA-53-7813-01 19 6496074 6496074 C T TUBB4A Missense_Mutation p.G146R 0.12 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-53-7813-01 19 9067611 9067611 G T MUC16 Missense_Mutation p.A6612D 0.36 unknown(0) TCGA-53-7813-01 19 9076071 9076071 A G MUC16 Missense_Mutation p.M3792T 0.40 unknown(0) TCGA-53-7813-01 19 9580363 9580363 G T ZNF560 Missense_Mutation p.L158M 0.29 deleterious(0.05) possibly_damaging(0.86) TCGA-53-7813-01 1 101460684 101460684 G T DPH5 Missense_Mutation p.S171Y 0.17 deleterious(0) probably_damaging(0.969) TCGA-53-7813-01 1 154561033 154561033 T C ADAR Missense_Mutation p.Y960C 0.21 deleterious(0) probably_damaging(1) TCGA-53-7813-01 1 155291133 155291133 C T RUSC1 Intron 0.18 TCGA-53-7813-01 1 175066576 175066576 G T TNN Missense_Mutation p.V538L 0.35 tolerated(0.24) benign(0.052) TCGA-53-7813-01 1 185149536 185149536 C T SWT1 Missense_Mutation p.P327L 0.15 tolerated(0.06) benign(0.015) TCGA-53-7813-01 1 186106702 186106702 G A HMCN1 Missense_Mutation p.R4552K 0.14 probably_damaging(0.963) TCGA-53-7813-01 1 202549702 202549702 T A PPP1R12B 3'UTR 0.16 TCGA-53-7813-01 1 220232160 220232160 C A BPNT1 3'UTR 0.23 TCGA-53-7813-01 1 22207993 22207993 C T HSPG2 Missense_Mutation p.V553M 0.26 probably_damaging(0.995) TCGA-53-7813-01 1 228005073 228005073 C T PRSS38 Missense_Mutation p.R159C 0.16 tolerated(0.08) probably_damaging(0.98) TCGA-53-7813-01 1 248112889 248112889 C A OR2L8 Missense_Mutation p.L244I 0.26 deleterious(0.02) possibly_damaging(0.715) TCGA-53-7813-01 1 248366489 248366489 G - OR2M3 Frame_Shift_Del p.G41Efs*90 0.11 TCGA-53-7813-01 1 87031633 87031633 C T CLCA4 Missense_Mutation p.P295L 0.29 deleterious(0.01) benign(0.417) TCGA-53-7813-01 20 18608797 18608797 G T DTD1 Missense_Mutation p.V133L 0.17 deleterious(0.02) benign(0.311) TCGA-53-7813-01 20 24524042 24524042 G C SYNDIG1 Silent p.G103G 0.21 TCGA-53-7813-01 20 50139803 50139803 C A NFATC2 Missense_Mutation p.S326I 0.31 deleterious(0.01) possibly_damaging(0.756) TCGA-53-7813-01 20 54972262 54972262 G T CSTF1 Splice_Site p.X57_splice 0.29 TCGA-53-7813-01 20 61511164 61511164 G A DIDO1 Silent p.S2048S 0.30 TCGA-53-7813-01 21 32119349 32119349 C A KRTAP21-2 Nonsense_Mutation p.G58* 0.24 TCGA-53-7813-01 22 28194031 28194031 T C MN1 Missense_Mutation p.N834S 0.27 probably_damaging(0.99) TCGA-53-7813-01 22 35943106 35943106 C A RASD2 Missense_Mutation p.R84S 0.31 deleterious(0) probably_damaging(0.933) TCGA-53-7813-01 2 105858376 105858376 G A GPR45 Missense_Mutation p.A21T 0.34 tolerated(0.59) benign(0) TCGA-53-7813-01 2 137814416 137814416 C A THSD7B Missense_Mutation p.S189Y 0.24 deleterious(0) probably_damaging(0.989) TCGA-53-7813-01 2 160241699 160241699 A T BAZ2B Missense_Mutation p.I1218N 0.12 possibly_damaging(0.573) TCGA-53-7813-01 2 169764282 169764282 C T G6PC2 Missense_Mutation p.T254M 0.27 deleterious(0.03) benign(0.341) TCGA-53-7813-01 2 172951500 172951500 C T DLX1 Silent p.N144N 0.27 TCGA-53-7813-01 2 179667046 179667046 G A TTN Silent p.S38S 0.27 TCGA-53-7813-01 2 183387015 183387015 C A PDE1A Missense_Mutation p.R30L 0.16 deleterious_low_confidence(0.03) benign(0.01) TCGA-53-7813-01 2 234178672 234178672 A T ATG16L1 Missense_Mutation p.K222N 0.32 deleterious(0.05) possibly_damaging(0.826) TCGA-53-7813-01 2 29543738 29543738 A T ALK Silent p.P475P 0.12 TCGA-53-7813-01 2 55403124 55403124 T G CLHC1 Splice_Site p.X522_splice 0.39 TCGA-53-7813-01 2 58313494 58313494 A G VRK2 Missense_Mutation p.K93E 0.14 deleterious(0.01) possibly_damaging(0.889) TCGA-53-7813-01 2 77748791 77748791 T C LRRTM4 Intron 0.29 TCGA-53-7813-01 2 85133559 85133559 A G TMSB10 3'UTR 0.18 TCGA-53-7813-01 2 95513814 95513814 C T RNU6-1320P 5'Flank 0.18 TCGA-53-7813-01 3 126219611 126219611 G A UROC1 Nonsense_Mutation p.Q418* 0.12 TCGA-53-7813-01 3 142769829 142769829 A T U2SURP Nonsense_Mutation p.K865* 0.21 TCGA-53-7813-01 3 179085233 179085233 A T MFN1 Nonsense_Mutation p.R254* 0.10 TCGA-53-7813-01 3 183995734 183995734 G T ECE2 Missense_Mutation p.S285I 0.27 tolerated(0.16) probably_damaging(0.989) TCGA-53-7813-01 3 184086190 184086190 G C POLR2H 3'UTR 0.44 TCGA-53-7813-01 3 186334970 186334970 G C AHSG Intron 0.17 TCGA-53-7813-01 3 41953070 41953070 G T ULK4 Missense_Mutation p.H326Q 0.12 tolerated(0.59) benign(0) TCGA-53-7813-01 3 49758482 49758482 C G RNF123 Missense_Mutation p.I1256M 0.06 deleterious(0) probably_damaging(1) TCGA-53-7813-01 3 64587701 64587701 C G ADAMTS9 Missense_Mutation p.E1312D 0.38 tolerated(0.51) benign(0.002) TCGA-53-7813-01 4 1206184 1206184 G C CTBP1 Silent p.A389A 0.33 TCGA-53-7813-01 4 126373318 126373318 G T FAT4 Missense_Mutation p.R3716L 0.28 benign(0.187) TCGA-53-7813-01 4 1321485 1321485 C G MAEA Missense_Mutation p.A217G 0.31 deleterious(0.01) probably_damaging(0.972) TCGA-53-7813-01 4 159493897 159493897 C A RXFP1 Missense_Mutation p.P33T 0.30 deleterious(0) probably_damaging(0.939) TCGA-53-7813-01 4 1808905 1808905 C G FGFR3 Missense_Mutation p.S781R 0.13 deleterious(0) probably_damaging(0.936) TCGA-53-7813-01 4 1809331 1809331 T G FGFR3 3'UTR 0.21 TCGA-53-7813-01 4 1809338 1809338 G T FGFR3 3'UTR 0.18 TCGA-53-7813-01 4 189061712 189061712 C T TRIML1 Missense_Mutation p.R147C 0.14 deleterious(0.03) benign(0.007) TCGA-53-7813-01 4 71468534 71468534 C A AMBN Missense_Mutation p.P197H 0.28 deleterious(0.04) benign(0.152) TCGA-53-7813-01 5 140803124 140803124 G T PCDHGA11 Missense_Mutation p.G777V 0.32 tolerated_low_confidence(0.07) benign(0.003) TCGA-53-7813-01 5 150276251 150276251 A C ZNF300 Missense_Mutation p.F200V 0.22 tolerated(0.17) benign(0.008) TCGA-53-7813-01 5 179251243 179251243 G A SQSTM1 Nonsense_Mutation p.W198* 0.20 TCGA-53-7813-01 5 44809523 44809523 G T MRPS30 Missense_Mutation p.E153D 0.42 deleterious(0.02) probably_damaging(0.921) TCGA-53-7813-01 6 112035607 112035607 C T FYN Missense_Mutation p.R96Q 0.14 deleterious(0.02) benign(0.09) TCGA-53-7813-01 6 129637037 129637037 G A LAMA2 Missense_Mutation p.R1289K 0.29 tolerated(0.26) possibly_damaging(0.626) TCGA-53-7813-01 6 129637038 129637038 G T LAMA2 Missense_Mutation p.R1289S 0.28 tolerated(0.36) possibly_damaging(0.7) TCGA-53-7813-01 6 136596725 136596725 T C BCLAF1 Silent p.K599K 0.09 TCGA-53-7813-01 6 139094796 139094796 C A CCDC28A 5'UTR 0.25 TCGA-53-7813-01 6 149893739 149893739 G T GINM1 Missense_Mutation p.V93L 0.38 tolerated(0.74) benign(0.125) TCGA-53-7813-01 6 55113507 55113507 G A HCRTR2 Silent p.L98L 0.23 TCGA-53-7813-01 7 100799899 100799899 C G AP1S1 Missense_Mutation p.R10G 0.42 deleterious(0) probably_damaging(0.982) TCGA-53-7813-01 7 116146056 116146056 A T CAV2 Missense_Mutation p.M124L 0.16 tolerated(0.13) benign(0.034) TCGA-53-7813-01 7 121652317 121652317 A T PTPRZ1 Missense_Mutation p.N1073Y 0.23 deleterious_low_confidence(0) benign(0.232) TCGA-53-7813-01 7 126173883 126173883 A T GRM8 Missense_Mutation p.L518Q 0.11 tolerated(0.42) possibly_damaging(0.882) TCGA-53-7813-01 7 12727948 12727976 TGTTATTCTGGGTTTGGACTGTGCTGGAA - ARL4A Frame_Shift_Del p.V24Dfs*11 0.12 TCGA-53-7813-01 7 134216666 134216666 C T AKR1B10 Missense_Mutation p.P81S 0.17 tolerated(0.65) benign(0.026) TCGA-53-7813-01 7 141803165 141803165 C T MGAM Missense_Mutation p.P1808S 0.13 tolerated(0.44) benign(0.001) TCGA-53-7813-01 7 143079991 143079991 G T ZYX Missense_Mutation p.W200L 0.13 tolerated(0.74) probably_damaging(0.99) TCGA-53-7813-01 7 149525062 149525062 G T SSPO RNA 0.14 TCGA-53-7813-01 7 2983872 2983872 T A CARD11 Missense_Mutation p.M220L 0.15 tolerated(0.64) benign(0.007) TCGA-53-7813-01 7 53104090 53104090 C A POM121L12 Silent p.P242P 0.17 TCGA-53-7813-01 7 57529215 57529215 A T ZNF716 Nonsense_Mutation p.K350* 0.17 TCGA-53-7813-01 7 7476096 7476096 T C COL28A1 Splice_Site p.X598_splice 0.37 TCGA-53-7813-01 8 10583375 10583375 C A SOX7 Missense_Mutation p.G399V 0.11 deleterious(0.01) probably_damaging(0.964) TCGA-53-7813-01 8 10583376 10583376 C A SOX7 Missense_Mutation p.G399W 0.11 deleterious(0) probably_damaging(0.994) TCGA-53-7813-01 8 113237134 113237134 C A CSMD3 Nonsense_Mutation p.G3664* 0.06 TCGA-53-7813-01 8 113529289 113529289 C A CSMD3 Missense_Mutation p.W1577L 0.09 deleterious(0) probably_damaging(1) TCGA-53-7813-01 8 116599521 116599521 G A TRPS1 Missense_Mutation p.R803C 0.08 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-53-7813-01 8 120758944 120758944 C A TAF2 Splice_Site p.X1036_splice 0.47 TCGA-53-7813-01 8 133053374 133053374 T A OC90 Missense_Mutation p.E125V 0.48 deleterious(0) probably_damaging(0.999) TCGA-53-7813-01 8 39602349 39602349 A G ADAM2 Intron 0.46 TCGA-53-7813-01 8 42911657 42911657 G T FNTA Silent p.V56V 0.27 TCGA-53-7813-01 8 88885446 88885446 C T DCAF4L2 Missense_Mutation p.D252N 0.07 deleterious(0) probably_damaging(1) TCGA-53-7813-01 9 102888823 102888823 G T INVS Missense_Mutation p.A89S 0.27 tolerated(0.06) possibly_damaging(0.728) TCGA-53-7813-01 9 117400932 117400932 G T C9orf91 Missense_Mutation p.G259C 0.07 deleterious(0.03) possibly_damaging(0.546) TCGA-53-7813-01 9 135866444 135866444 G T GFI1B 3'UTR 0.28 TCGA-53-7813-01 9 139327515 139327515 G C INPP5E Missense_Mutation p.S391C 0.33 deleterious(0) possibly_damaging(0.853) TCGA-53-7813-01 9 17795787 17795787 G T SH3GL2 3'UTR 0.50 TCGA-53-7813-01 9 17795788 17795788 G T SH3GL2 3'UTR 0.47 TCGA-53-7813-01 9 18533290 18533290 G - ADAMTSL1 Frame_Shift_Del 0.24 TCGA-53-7813-01 9 420560 420561 TG - DOCK8 Frame_Shift_Del p.L1336Mfs*3 0.09 TCGA-53-7813-01 9 5080270 5080270 G T JAK2 Nonsense_Mutation p.E725* 0.39 TCGA-53-7813-01 9 8340408 8340408 G A PTPRD Missense_Mutation p.R1730W 0.10 deleterious(0) probably_damaging(1) TCGA-53-7813-01 X 101576732 101576732 G T NXF2 Missense_Mutation p.G410C 0.18 deleterious(0.01) possibly_damaging(0.884) TCGA-53-7813-01 X 101912229 101912229 A G GPRASP1 Missense_Mutation p.R1130G 0.05 deleterious(0) possibly_damaging(0.597) TCGA-53-7813-01 X 117960320 117960320 G T ZCCHC12 Missense_Mutation p.E371D 0.16 deleterious_low_confidence(0.02) benign(0.253) TCGA-53-7813-01 X 118893356 118893356 C A SOWAHD Silent p.A242A 0.33 TCGA-53-7813-01 X 123480601 123480601 G T SH2D1A Missense_Mutation p.V37L 0.09 tolerated(0.34) benign(0.006) TCGA-53-7813-01 X 144904859 144904859 A - SLITRK2 Frame_Shift_Del p.M307* 0.15 TCGA-53-7813-01 X 147027066 147027066 A T FMR1 Missense_Mutation p.H556L 0.24 tolerated_low_confidence(0.29) benign(0.01) TCGA-53-7813-01 X 147084782 147084782 C A FMR1NB Silent p.G113G 0.25 TCGA-53-7813-01 X 148798206 148798206 G T MAGEA11 Nonsense_Mutation p.E354* 0.18 TCGA-53-7813-01 X 149631068 149631068 G T MAMLD1 Intron 0.21 TCGA-53-7813-01 X 153172004 153172004 T A AVPR2 Missense_Mutation p.L313Q 0.19 deleterious(0) probably_damaging(0.974) TCGA-53-7813-01 X 153588368 153588368 A G FLNA Silent p.I1265I 0.10 TCGA-53-7813-01 X 3228353 3228353 G T MXRA5 Missense_Mutation p.L2631M 0.29 deleterious(0) probably_damaging(0.999) TCGA-53-7813-01 X 3238388 3238388 G A MXRA5 Silent p.L1780L 0.24 TCGA-53-7813-01 X 37969597 37969597 G A SYTL5 Silent p.L508L 0.16 TCGA-53-7813-01 X 44703617 44703617 G A DUSP21 Missense_Mutation p.R80H 0.11 tolerated(0.59) benign(0.003) TCGA-53-7813-01 X 46913915 46913915 A G JADE3 Missense_Mutation p.N443S 0.20 deleterious(0) probably_damaging(0.998) TCGA-53-7813-01 X 48652249 48652249 G T GATA1 Missense_Mutation p.R307L 0.18 deleterious(0.01) probably_damaging(0.931) TCGA-53-7813-01 X 6069327 6069327 G T NLGN4X Missense_Mutation p.P61T 0.06 tolerated(0.36) benign(0.003) TCGA-53-7813-01 X 67426434 67426434 T A OPHN1 Missense_Mutation p.Q305L 0.28 deleterious(0.03) probably_damaging(0.961) TCGA-53-7813-01 X 69825332 69825332 C A TEX11 Silent p.L677L 0.11 TCGA-53-7813-01 X 70320642 70320642 G - FOXO4 Frame_Shift_Del p.G188Afs*87 0.26 TCGA-53-7813-01 X 73045778 73045778 C A XIST RNA 0.25 TCGA-53-7813-01 X 77298834 77298834 T G ATP7A Missense_Mutation p.V1342G 0.05 deleterious(0) probably_damaging(0.999) TCGA-53-7813-01 X 91133872 91133872 C A PCDH11X Missense_Mutation p.P878H 0.28 deleterious(0) probably_damaging(0.997) TCGA-53-A4EZ-01 10 102239691 102239691 A - WNT8B Frame_Shift_Del p.K55Sfs*46 0.31 TCGA-53-A4EZ-01 10 102743813 102743813 C T MRPL43 Missense_Mutation p.G162S 0.36 tolerated_low_confidence(0.62) benign(0) TCGA-53-A4EZ-01 10 11805529 11805529 C T ECHDC3 Missense_Mutation p.H300Y 0.56 deleterious(0.01) benign(0.018) TCGA-53-A4EZ-01 10 135086333 135086333 C A ADAM8 Missense_Mutation p.R225L 0.47 deleterious(0) probably_damaging(0.969) TCGA-53-A4EZ-01 10 22021901 22021901 G A MLLT10 Silent p.L764L 0.32 TCGA-53-A4EZ-01 10 26310596 26310596 G T MYO3A Intron 0.40 TCGA-53-A4EZ-01 10 26507976 26507976 G T GAD2 Silent p.L97L 0.20 TCGA-53-A4EZ-01 10 27425220 27425220 C A YME1L1 Silent p.A232A 0.14 TCGA-53-A4EZ-01 10 43693527 43693527 G C RASGEF1A Missense_Mutation p.N383K 0.15 deleterious(0) benign(0.063) TCGA-53-A4EZ-01 10 45798672 45798672 C A OR13A1 3'UTR 0.62 TCGA-53-A4EZ-01 10 50121301 50121301 G A LRRC18 Intron 0.21 TCGA-53-A4EZ-01 10 51555832 51555832 C A MSMB Silent p.T35T 0.33 TCGA-53-A4EZ-01 10 55568988 55568988 C - PCDH15 Frame_Shift_Del p.E542Nfs*207 0.13 TCGA-53-A4EZ-01 10 6262723 6262723 C G PFKFB3 Missense_Mutation p.I242M 0.10 probably_damaging(0.999) TCGA-53-A4EZ-01 10 69881986 69881986 C A MYPN Missense_Mutation p.P264H 0.16 deleterious(0.04) probably_damaging(0.998) TCGA-53-A4EZ-01 10 69959218 69959218 G C MYPN Missense_Mutation p.G1127R 0.37 deleterious(0) probably_damaging(0.999) TCGA-53-A4EZ-01 10 72520271 72520271 C A ADAMTS14 Missense_Mutation p.P1115T 0.14 tolerated(0.15) benign(0.017) TCGA-53-A4EZ-01 10 7745371 7745371 G C ITIH2 5'UTR 0.18 TCGA-53-A4EZ-01 10 87362239 87362239 G T GRID1 Silent p.R941R 0.35 TCGA-53-A4EZ-01 10 87362240 87362240 G T GRID1 Missense_Mutation p.S940R 0.35 deleterious_low_confidence(0.04) benign(0.004) TCGA-53-A4EZ-01 10 875333 875333 G A LARP4B Missense_Mutation p.P373S 0.34 deleterious(0.02) probably_damaging(0.993) TCGA-53-A4EZ-01 10 94700547 94700547 G A EXOC6 Missense_Mutation p.E426K 0.12 deleterious(0) possibly_damaging(0.493) TCGA-53-A4EZ-01 10 94828255 94828255 G A CYP26C1 Missense_Mutation p.R457H 0.10 deleterious(0) probably_damaging(1) TCGA-53-A4EZ-01 10 97916991 97916991 G T ZNF518A RNA 0.14 TCGA-53-A4EZ-01 10 97916992 97916992 G T ZNF518A RNA 0.14 TCGA-53-A4EZ-01 10 99371314 99371314 G A HOGA1 Nonsense_Mutation p.W294* 0.48 TCGA-53-A4EZ-01 11 101786118 101786118 G T KIAA1377 Missense_Mutation p.G35W 0.28 deleterious(0.04) probably_damaging(0.966) TCGA-53-A4EZ-01 11 101786119 101786119 G T KIAA1377 Missense_Mutation p.G35V 0.28 deleterious(0.02) possibly_damaging(0.656) TCGA-53-A4EZ-01 11 105836689 105836689 C G GRIA4 Intron 0.44 TCGA-53-A4EZ-01 11 116729996 116729996 C A SIK3 Missense_Mutation p.S811I 0.40 deleterious_low_confidence(0) possibly_damaging(0.61) TCGA-53-A4EZ-01 11 117097914 117097914 C A PCSK7 Missense_Mutation p.S243I 0.38 deleterious(0) probably_damaging(0.953) TCGA-53-A4EZ-01 11 117376305 117376305 G C DSCAML1 Silent p.G702G 0.45 TCGA-53-A4EZ-01 11 129812525 129812525 C A PRDM10 Splice_Site p.X255_splice 0.25 TCGA-53-A4EZ-01 11 17414645 17414645 G A ABCC8 Silent p.L1547L 0.25 TCGA-53-A4EZ-01 11 20099124 20099124 G T NAV2 Missense_Mutation p.Q1726H 0.20 deleterious(0) probably_damaging(0.995) TCGA-53-A4EZ-01 11 2191095 2191095 G T TH Silent p.R64R 0.15 TCGA-53-A4EZ-01 11 25004779 25004779 G C LUZP2 Silent p.R235R 0.19 TCGA-53-A4EZ-01 11 26695049 26695049 G T SLC5A12 Missense_Mutation p.P536Q 0.14 deleterious(0.02) probably_damaging(1) TCGA-53-A4EZ-01 11 27016754 27016754 G A FIBIN 3'UTR 0.33 TCGA-53-A4EZ-01 11 3115615 3115615 C A OSBPL5 Intron 0.12 TCGA-53-A4EZ-01 11 32697187 32697187 C A CCDC73 Missense_Mutation p.R190L 0.15 tolerated(0.07) benign(0.059) TCGA-53-A4EZ-01 11 33564327 33564327 T C KIAA1549L Silent p.F109F 0.19 TCGA-53-A4EZ-01 11 33564921 33564921 C A KIAA1549L Silent p.T307T 0.26 TCGA-53-A4EZ-01 11 43284494 43284494 G C HNRNPKP3 RNA 0.22 TCGA-53-A4EZ-01 11 43776563 43776563 G T HSD17B12 Intron 0.14 TCGA-53-A4EZ-01 11 44289115 44289115 G C ALX4 Missense_Mutation p.Q279E 0.24 deleterious(0) possibly_damaging(0.857) TCGA-53-A4EZ-01 11 55339818 55339818 C A OR4C16 Missense_Mutation p.S72Y 0.14 deleterious(0) probably_damaging(0.928) TCGA-53-A4EZ-01 11 55433083 55433083 G A OR4C6 Nonsense_Mutation p.W147* 0.37 TCGA-53-A4EZ-01 11 55579352 55579352 C A OR5L1 Missense_Mutation p.S137Y 0.15 deleterious(0) probably_damaging(0.966) TCGA-53-A4EZ-01 11 55587266 55587266 C A OR5D18 Missense_Mutation p.P54H 0.17 deleterious(0.01) possibly_damaging(0.671) TCGA-53-A4EZ-01 11 55653245 55653245 C A TRIM51 Missense_Mutation p.P114Q 0.36 deleterious(0.01) benign(0.252) TCGA-53-A4EZ-01 11 55681251 55681251 G T OR5W2 Missense_Mutation p.Q270K 0.10 tolerated(0.07) benign(0.144) TCGA-53-A4EZ-01 11 55735685 55735685 C T OR10AG1 Silent p.L85L 0.17 TCGA-53-A4EZ-01 11 55798115 55798115 C A OR5AS1 Missense_Mutation p.S74Y 0.31 deleterious(0) probably_damaging(0.976) TCGA-53-A4EZ-01 11 57982876 57982876 C G OR1S1 Missense_Mutation p.I220M 0.36 tolerated(0.3) probably_damaging(0.976) TCGA-53-A4EZ-01 11 58979449 58979449 G T MPEG1 Missense_Mutation p.T297N 0.38 tolerated(0.5) benign(0.004) TCGA-53-A4EZ-01 11 60264873 60264873 C A MS4A12 Missense_Mutation p.P28T 0.20 tolerated(0.08) possibly_damaging(0.575) TCGA-53-A4EZ-01 11 62760667 62760667 G A SLC22A8 3'UTR 0.54 TCGA-53-A4EZ-01 11 62760668 62760668 G T SLC22A8 3'UTR 0.54 TCGA-53-A4EZ-01 11 6292587 6292587 C T CCKBR Silent p.N386N 0.25 TCGA-53-A4EZ-01 11 64662453 64662453 G A ATG2A Nonsense_Mutation p.Q1937* 0.14 TCGA-53-A4EZ-01 11 66262834 66262834 A T DPP3 Splice_Site p.X485_splice 0.63 TCGA-53-A4EZ-01 11 6806768 6806768 C A OR2AG1 Missense_Mutation p.P167H 0.20 deleterious(0) probably_damaging(0.992) TCGA-53-A4EZ-01 11 69957863 69957863 C G ANO1 Missense_Mutation p.H284D 0.35 deleterious(0) probably_damaging(0.997) TCGA-53-A4EZ-01 11 7722022 7722022 C A OVCH2 Missense_Mutation p.G241V 0.25 deleterious(0) probably_damaging(1) TCGA-53-A4EZ-01 11 83497616 83497616 A T DLG2 Intron 0.27 TCGA-53-A4EZ-01 11 88911130 88911130 G A TYR Silent p.L3L 0.28 TCGA-53-A4EZ-01 11 89531792 89531792 T C TRIM49 Missense_Mutation p.I289V 0.12 tolerated(0.21) benign(0.006) TCGA-53-A4EZ-01 11 92087744 92087744 G T FAT3 Missense_Mutation p.E822D 0.30 benign(0.05) TCGA-53-A4EZ-01 11 92535005 92535005 G T FAT3 Silent p.V2942V 0.23 TCGA-53-A4EZ-01 11 94862455 94862455 G T ENDOD1 Silent p.V405V 0.27 TCGA-53-A4EZ-01 12 100200347 100200347 C A ANKS1B Silent p.A168A 0.15 TCGA-53-A4EZ-01 12 107048012 107048012 G A RFX4 Silent p.E75E 0.15 TCGA-53-A4EZ-01 12 109185971 109185971 C A SSH1 Intron 0.49 TCGA-53-A4EZ-01 12 109210909 109210909 C T SSH1 Silent p.A102A 0.08 TCGA-53-A4EZ-01 12 117287282 117287282 C T RNFT2 3'UTR 0.64 TCGA-53-A4EZ-01 12 117287283 117287283 G T RNFT2 3'UTR 0.64 TCGA-53-A4EZ-01 12 117725973 117725973 G T NOS1 Missense_Mutation p.Q345K 0.48 tolerated(1) benign(0.004) TCGA-53-A4EZ-01 12 124206996 124206996 G A ATP6V0A2 Splice_Site p.X98_splice 0.52 TCGA-53-A4EZ-01 12 124330610 124330610 G T DNAH10 Missense_Mutation p.G1790V 0.14 probably_damaging(0.978) TCGA-53-A4EZ-01 12 129558697 129558697 G T TMEM132D Missense_Mutation p.S1008Y 0.49 tolerated(0.06) possibly_damaging(0.847) TCGA-53-A4EZ-01 12 129566388 129566388 G A TMEM132D Silent p.F613F 0.12 TCGA-53-A4EZ-01 12 13367624 13367624 A G EMP1 Silent p.%3D 0.30 TCGA-53-A4EZ-01 12 1940354 1940355 - C LRTM2 Frame_Shift_Ins p.R109Pfs*12 0.26 TCGA-53-A4EZ-01 12 20890185 20890186 - A SLCO1C1 Frame_Shift_Ins p.N510Kfs*21 0.19 TCGA-53-A4EZ-01 12 29640681 29640681 G T OVCH1 Silent p.G279G 0.41 TCGA-53-A4EZ-01 12 32900080 32900080 A C YARS2 3'UTR 0.18 TCGA-53-A4EZ-01 12 43777618 43777618 C A ADAMTS20 Missense_Mutation p.G1539W 0.38 tolerated(0.1) possibly_damaging(0.525) TCGA-53-A4EZ-01 12 43846210 43846210 C T ADAMTS20 Missense_Mutation p.G649D 0.13 tolerated(0.11) benign(0.056) TCGA-53-A4EZ-01 12 4479658 4479658 G T FGF23 Missense_Mutation p.P203T 0.29 deleterious(0.04) possibly_damaging(0.541) TCGA-53-A4EZ-01 12 4481827 4481827 A T FGF23 Missense_Mutation p.V83E 0.17 deleterious(0) probably_damaging(0.937) TCGA-53-A4EZ-01 12 49312603 49312603 C G CCDC65 Missense_Mutation p.R315G 0.25 tolerated(0.1) benign(0.067) TCGA-53-A4EZ-01 12 49314778 49314778 G T CCDC65 Silent p.L364L 0.09 TCGA-53-A4EZ-01 12 52314607 52314607 C A ACVRL1 Missense_Mutation p.T481N 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-53-A4EZ-01 12 52314608 52314608 C A ACVRL1 Silent p.T481T 0.38 TCGA-53-A4EZ-01 12 52778863 52778863 G A KRT84 Silent p.I169I 0.20 TCGA-53-A4EZ-01 12 71974079 71974079 T A LGR5 Silent p.A476A 0.15 TCGA-53-A4EZ-01 12 71977624 71977624 G A LGR5 Missense_Mutation p.V612M 0.13 tolerated(0.26) benign(0.149) TCGA-53-A4EZ-01 12 73012765 73012765 C A TRHDE Missense_Mutation p.L761I 0.10 deleterious(0.02) probably_damaging(0.913) TCGA-53-A4EZ-01 12 78574746 78574746 C A NAV3 Missense_Mutation p.S1849R 0.34 tolerated(0.07) possibly_damaging(0.843) TCGA-53-A4EZ-01 12 94243995 94243995 G T CRADD Missense_Mutation p.G183V 0.46 deleterious(0.02) possibly_damaging(0.557) TCGA-53-A4EZ-01 12 94243996 94243996 G C CRADD Silent p.G183G 0.46 TCGA-53-A4EZ-01 12 98849908 98849908 C A SLC9A7P1 RNA 0.15 TCGA-53-A4EZ-01 13 114792864 114792864 C A RASA3 Splice_Site p.X201_splice 0.48 TCGA-53-A4EZ-01 13 25418794 25418794 G C RNF17 Missense_Mutation p.E946Q 0.23 tolerated(1) benign(0.31) TCGA-53-A4EZ-01 13 32869530 32869530 G T FRY Missense_Mutation p.R2992M 0.35 tolerated_low_confidence(0.27) benign(0.01) TCGA-53-A4EZ-01 13 37269431 37269431 C A SERTM1 Silent p.S72S 0.43 TCGA-53-A4EZ-01 13 38225452 38225452 A T TRPC4 Missense_Mutation p.L677M 0.38 tolerated(0.06) possibly_damaging(0.8) TCGA-53-A4EZ-01 13 72131182 72131182 T C DACH1 Missense_Mutation p.E517G 0.38 benign(0.089) TCGA-53-A4EZ-01 13 84454891 84454891 T A SLITRK1 Missense_Mutation p.D251V 0.43 deleterious(0.01) probably_damaging(0.978) TCGA-53-A4EZ-01 13 86369942 86369942 C A SLITRK6 Missense_Mutation p.E234D 0.44 tolerated(0.25) probably_damaging(0.996) TCGA-53-A4EZ-01 14 100576055 100576055 C - EVL Intron 0.21 TCGA-53-A4EZ-01 14 102028788 102028788 C T DIO3 3'UTR 0.30 TCGA-53-A4EZ-01 14 105415208 105415208 C A AHNAK2 Missense_Mutation p.G2194W 0.27 possibly_damaging(0.905) TCGA-53-A4EZ-01 14 105415703 105415703 C A AHNAK2 Missense_Mutation p.G2029W 0.25 probably_damaging(0.998) TCGA-53-A4EZ-01 14 105421043 105421043 C T AHNAK2 Missense_Mutation p.G249R 0.33 possibly_damaging(0.468) TCGA-53-A4EZ-01 14 19553506 19553506 C A POTEG Missense_Mutation p.H30Q 0.17 deleterious_low_confidence(0) benign(0.125) TCGA-53-A4EZ-01 14 19553507 19553507 T A POTEG Missense_Mutation p.C31S 0.17 tolerated_low_confidence(0.07) benign(0.002) TCGA-53-A4EZ-01 14 20404741 20404741 G T OR4K1 Missense_Mutation p.V306L 0.19 tolerated(0.66) benign(0.001) TCGA-53-A4EZ-01 14 21467956 21467956 G T SLC39A2 Silent p.L57L 0.23 TCGA-53-A4EZ-01 14 21487318 21487318 G A NDRG2 Missense_Mutation p.R240C 0.25 tolerated(0.05) probably_damaging(0.996) TCGA-53-A4EZ-01 14 21821872 21821872 T C SUPT16H Silent p.A970A 0.36 TCGA-53-A4EZ-01 14 23874574 23874574 G T MYH6 Silent p.L120L 0.24 TCGA-53-A4EZ-01 14 35872429 35872429 G A NFKBIA Silent p.A158A 0.33 TCGA-53-A4EZ-01 14 51111627 51111627 C T SAV1 Missense_Mutation p.R214K 0.29 deleterious(0.04) probably_damaging(0.973) TCGA-53-A4EZ-01 14 52505564 52505564 T A NID2 Missense_Mutation p.T720S 0.26 tolerated(0.52) benign(0.004) TCGA-53-A4EZ-01 14 70237973 70237973 G T SRSF5 Missense_Mutation p.R205L 0.25 deleterious(0.04) unknown(0) TCGA-53-A4EZ-01 14 76437955 76437955 G C TGFB3 Silent p.V153V 0.19 TCGA-53-A4EZ-01 14 89124732 89124732 C A EML5 Missense_Mutation p.G1226W 0.25 deleterious(0) probably_damaging(0.999) TCGA-53-A4EZ-01 14 92609389 92609389 C T CPSF2 Silent p.D297D 0.25 TCGA-53-A4EZ-01 14 94526848 94526848 C A DDX24 Silent p.T503T 0.26 TCGA-53-A4EZ-01 14 94929228 94929228 G T SERPINA9 3'UTR 0.38 TCGA-53-A4EZ-01 14 94964292 94964292 C A SERPINA12 Missense_Mutation p.R148L 0.30 deleterious(0.02) benign(0.209) TCGA-53-A4EZ-01 15 101775672 101775672 G C CHSY1 Missense_Mutation p.P144R 0.21 deleterious(0) probably_damaging(1) TCGA-53-A4EZ-01 15 24921897 24921897 C A NPAP1 Missense_Mutation p.P295T 0.24 tolerated(0.59) benign(0.03) TCGA-53-A4EZ-01 15 24923358 24923358 C A NPAP1 Missense_Mutation p.Q782K 0.11 tolerated_low_confidence(1) benign(0.158) TCGA-53-A4EZ-01 15 25463927 25463927 G T SNORD115-28 5'Flank 0.17 TCGA-53-A4EZ-01 15 27725871 27725871 G T GABRG3 Missense_Mutation p.R217L 0.32 deleterious(0.01) benign(0.326) TCGA-53-A4EZ-01 15 28436363 28436363 C A HERC2 Missense_Mutation p.D2827Y 0.20 probably_damaging(0.982) TCGA-53-A4EZ-01 15 29397662 29397662 C T APBA2 Silent p.P535P 0.23 TCGA-53-A4EZ-01 15 31776661 31776661 C A OTUD7A Silent p.V539V 0.18 TCGA-53-A4EZ-01 15 34640603 34640603 C A NUTM1 Silent p.V150V 0.33 TCGA-53-A4EZ-01 15 34648892 34648892 C A NUTM1 Missense_Mutation p.L867I 0.31 tolerated(0.11) benign(0.063) TCGA-53-A4EZ-01 15 40675101 40675101 G A KNSTRN Missense_Mutation p.C22Y 0.22 tolerated_low_confidence(1) benign(0.002) TCGA-53-A4EZ-01 15 40751493 40751493 G T BAHD1 Missense_Mutation p.G277V 0.19 deleterious(0.02) benign(0.115) TCGA-53-A4EZ-01 15 43489612 43489612 G T EPB42 Missense_Mutation p.T685K 0.29 deleterious(0) probably_damaging(0.985) TCGA-53-A4EZ-01 15 43507498 43507498 G T EPB42 Silent p.T105T 0.15 TCGA-53-A4EZ-01 15 43749267 43749267 C A TP53BP1 Missense_Mutation p.L513F 0.13 tolerated(0.18) possibly_damaging(0.847) TCGA-53-A4EZ-01 15 45554276 45554276 G T SLC28A2 Missense_Mutation p.K78N 0.22 deleterious(0.02) benign(0.398) TCGA-53-A4EZ-01 15 54003627 54003627 C A WDR72 Missense_Mutation p.G255W 0.17 deleterious(0.04) probably_damaging(0.998) TCGA-53-A4EZ-01 15 54306214 54306214 G C UNC13C Missense_Mutation p.A372P 0.19 tolerated_low_confidence(0.1) probably_damaging(0.921) TCGA-53-A4EZ-01 15 63948096 63948096 C T HERC1 Missense_Mutation p.R3310Q 0.27 benign(0.128) TCGA-53-A4EZ-01 15 65108918 65108918 G C PIF1 Missense_Mutation p.A574G 0.21 deleterious(0.04) possibly_damaging(0.856) TCGA-53-A4EZ-01 15 65111421 65111421 A T PIF1 Silent p.G445G 0.15 TCGA-53-A4EZ-01 15 69003991 69003991 G T CORO2B Silent p.T198T 0.21 TCGA-53-A4EZ-01 15 69328256 69328256 C A NOX5 Missense_Mutation p.R390S 0.14 deleterious(0) probably_damaging(0.984) TCGA-53-A4EZ-01 15 77474191 77474191 C A PEAK1 Missense_Mutation p.L26F 0.18 deleterious(0.02) possibly_damaging(0.867) TCGA-53-A4EZ-01 15 78882622 78882622 C T CHRNA5 Silent p.L297L 0.22 TCGA-53-A4EZ-01 15 79748848 79748848 A T KIAA1024 Missense_Mutation p.E120V 0.24 deleterious(0.02) benign(0.305) TCGA-53-A4EZ-01 15 88423573 88423573 C A NTRK3 Missense_Mutation p.W754C 0.18 deleterious(0) probably_damaging(1) TCGA-53-A4EZ-01 15 90796525 90796525 G T TTLL13 Missense_Mutation p.D115Y 0.21 deleterious(0) benign(0.402) TCGA-53-A4EZ-01 16 16267190 16267190 G C ABCC6 Missense_Mutation p.P913R 0.60 tolerated(0.11) benign(0.006) TCGA-53-A4EZ-01 16 2012152 2012152 G T RPS2 Missense_Mutation p.H277N 0.09 deleterious(0.03) benign(0.011) TCGA-53-A4EZ-01 16 20430611 20430611 G C ACSM5 Missense_Mutation p.Q159H 0.49 deleterious(0.01) benign(0.061) TCGA-53-A4EZ-01 16 23722322 23722322 T A ERN2 Silent p.P85P 0.41 TCGA-53-A4EZ-01 16 27475893 27475893 C G GTF3C1 Missense_Mutation p.D1874H 0.37 tolerated(0.12) possibly_damaging(0.707) TCGA-53-A4EZ-01 16 28509027 28509027 G C APOBR Missense_Mutation p.V889L 0.60 tolerated(0.16) benign(0.402) TCGA-53-A4EZ-01 16 28847321 28847326 TGATGC - ATXN2L In_Frame_Del p.M989_L990del 0.36 TCGA-53-A4EZ-01 16 30732559 30732559 G T SRCAP Silent p.T1101T 0.42 TCGA-53-A4EZ-01 16 31309269 31309269 T C ITGAM Silent p.H568H 0.39 TCGA-53-A4EZ-01 16 31927731 31927731 T G ZNF267 Missense_Mutation p.C721G 0.25 deleterious(0) probably_damaging(0.991) TCGA-53-A4EZ-01 16 5123157 5123157 G T ALG1 Missense_Mutation p.G97V 0.38 tolerated(0.08) benign(0.115) TCGA-53-A4EZ-01 16 57954353 57954353 T A CNGB1 Missense_Mutation p.E580V 0.25 deleterious(0.01) benign(0.336) TCGA-53-A4EZ-01 16 66974562 66974562 C T CES2 Silent p.P324P 0.44 TCGA-53-A4EZ-01 16 68072016 68072016 G A DUS2 Silent p.L30L 0.48 TCGA-53-A4EZ-01 16 74446939 74446939 G T CLEC18B Silent p.L224L 0.17 TCGA-53-A4EZ-01 16 75669671 75669671 C G KARS Missense_Mutation p.L262F 0.45 deleterious(0.01) probably_damaging(0.997) TCGA-53-A4EZ-01 16 824874 824874 G T MSLNL Silent p.A566A 0.19 TCGA-53-A4EZ-01 17 10304609 10304609 C G MYH8 Missense_Mutation p.E1031Q 0.19 deleterious(0.04) probably_damaging(0.999) TCGA-53-A4EZ-01 17 10442632 10442632 C G MYH2 Missense_Mutation p.E436Q 0.36 deleterious(0) possibly_damaging(0.831) TCGA-53-A4EZ-01 17 10535231 10535231 C A MYH3 Nonsense_Mutation p.E1687* 0.17 TCGA-53-A4EZ-01 17 1257637 1257637 C T YWHAE Missense_Mutation p.A195T 0.17 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-53-A4EZ-01 17 17726883 17726883 C A SREBF1 Missense_Mutation p.D44Y 0.23 tolerated_low_confidence(0.23) benign(0.019) TCGA-53-A4EZ-01 17 19318441 19318441 G T RNF112 Missense_Mutation p.G406V 0.42 deleterious(0) probably_damaging(0.952) TCGA-53-A4EZ-01 17 3181688 3181688 T A OR3A2 Missense_Mutation p.N181I 0.34 deleterious(0) possibly_damaging(0.806) TCGA-53-A4EZ-01 17 35445976 35445976 C A ACACA Nonsense_Mutation p.E2309* 0.14 TCGA-53-A4EZ-01 17 3591365 3591365 C T P2RX5 Missense_Mutation p.E308K 0.26 deleterious(0) possibly_damaging(0.768) TCGA-53-A4EZ-01 17 3649080 3649080 A G ITGAE Missense_Mutation p.L766P 0.18 tolerated(0.2) possibly_damaging(0.761) TCGA-53-A4EZ-01 17 38907458 38907458 C A KRT25 Nonsense_Mutation p.E264* 0.27 TCGA-53-A4EZ-01 17 38978410 38978410 G T KRT10 Missense_Mutation p.S143Y 0.13 deleterious(0.01) unknown(0) TCGA-53-A4EZ-01 17 39394374 39394374 T A KRTAP9-8 Missense_Mutation p.V24E 0.34 tolerated(0.31) unknown(0) TCGA-53-A4EZ-01 17 4047233 4047233 C T CYB5D2 Missense_Mutation p.R62C 0.59 deleterious(0) possibly_damaging(0.768) TCGA-53-A4EZ-01 17 40948332 40948332 C A WNK4 Missense_Mutation p.P1208Q 0.15 deleterious(0.03) probably_damaging(0.984) TCGA-53-A4EZ-01 17 41926237 41926237 C A CD300LG Missense_Mutation p.L119M 0.31 tolerated(0.05) probably_damaging(0.961) TCGA-53-A4EZ-01 17 4863163 4863163 C A SPAG7 Missense_Mutation p.V156L 0.21 tolerated(0.3) benign(0.02) TCGA-53-A4EZ-01 17 4863164 4863164 C A SPAG7 Silent p.V155V 0.21 TCGA-53-A4EZ-01 17 56404127 56404127 C T BZRAP1 Missense_Mutation p.D120N 0.20 tolerated(0.38) benign(0.008) TCGA-53-A4EZ-01 17 59958411 59958411 C A INTS2 Silent p.L745L 0.35 TCGA-53-A4EZ-01 17 60060353 60060353 G A MED13 Missense_Mutation p.P1004L 0.36 deleterious(0) probably_damaging(0.999) TCGA-53-A4EZ-01 17 60348785 60348785 C A TBC1D3P2 RNA 0.11 TCGA-53-A4EZ-01 17 62021206 62021206 C T SCN4A Missense_Mutation p.G1306E 0.26 deleterious(0) possibly_damaging(0.666) TCGA-53-A4EZ-01 17 67081325 67081325 T G ABCA6 Splice_Site p.X1344_splice 0.64 TCGA-53-A4EZ-01 17 68171901 68171901 G A KCNJ2 Missense_Mutation p.E241K 0.24 deleterious(0) possibly_damaging(0.895) TCGA-53-A4EZ-01 17 70732843 70732843 C T SLC39A11 Missense_Mutation p.G213E 0.10 deleterious(0) probably_damaging(0.996) TCGA-53-A4EZ-01 17 71382003 71382003 C A SDK2 Missense_Mutation p.V1518L 0.20 tolerated(0.1) probably_damaging(0.992) TCGA-53-A4EZ-01 17 7186801 7186801 C A SLC2A4 Missense_Mutation p.Q54K 0.11 tolerated(0.58) benign(0.014) TCGA-53-A4EZ-01 17 72322508 72322508 C A KIF19 Missense_Mutation p.S7Y 0.30 tolerated(0.28) benign(0.258) TCGA-53-A4EZ-01 17 73500023 73500023 G C CASKIN2 Missense_Mutation p.N496K 0.39 tolerated(0.05) probably_damaging(0.982) TCGA-53-A4EZ-01 17 73820482 73820482 A T UNK Missense_Mutation p.H806L 0.38 tolerated_low_confidence(0.13) probably_damaging(0.921) TCGA-53-A4EZ-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.53 deleterious(0) probably_damaging(0.997) TCGA-53-A4EZ-01 17 7806656 7806656 G T CHD3 Missense_Mutation p.A1247S 0.15 possibly_damaging(0.515) TCGA-53-A4EZ-01 17 78210826 78210826 G T SLC26A11 Missense_Mutation p.G279V 0.17 deleterious(0) probably_damaging(1) TCGA-53-A4EZ-01 17 8808216 8808216 G T PIK3R5 Missense_Mutation p.P97Q 0.29 deleterious(0.01) possibly_damaging(0.526) TCGA-53-A4EZ-01 17 9511436 9511436 G T WDR16 Nonsense_Mutation p.G252* 0.52 TCGA-53-A4EZ-01 18 30092896 30092896 C A WBP11P1 RNA 0.16 TCGA-53-A4EZ-01 18 30349897 30349897 C A KLHL14 Nonsense_Mutation p.E220* 0.38 TCGA-53-A4EZ-01 18 31324479 31324479 G T ASXL3 Missense_Mutation p.C1556F 0.11 possibly_damaging(0.665) TCGA-53-A4EZ-01 18 33780028 33780028 A T MOCOS Missense_Mutation p.S228C 0.25 tolerated(0.29) benign(0.022) TCGA-53-A4EZ-01 18 3596996 3596996 G T DLGAP1 Intron 0.17 TCGA-53-A4EZ-01 18 40854338 40854338 C T SYT4 Missense_Mutation p.G19E 0.14 deleterious(0) possibly_damaging(0.845) TCGA-53-A4EZ-01 18 42532496 42532496 G T SETBP1 Missense_Mutation p.G1064V 0.31 deleterious(0) probably_damaging(1) TCGA-53-A4EZ-01 18 43418873 43418873 G T SIGLEC15 Silent p.L229L 0.35 TCGA-53-A4EZ-01 18 5291982 5291982 G A ZBTB14 Silent p.V75V 0.28 TCGA-53-A4EZ-01 18 52921801 52921801 T C TCF4 Missense_Mutation p.H528R 0.28 deleterious(0) benign(0.186) TCGA-53-A4EZ-01 18 55238745 55238745 G A FECH Silent p.R120R 0.25 TCGA-53-A4EZ-01 18 59206379 59206379 G T CDH20 Splice_Site p.X510_splice 0.19 TCGA-53-A4EZ-01 18 59221583 59221583 G C CDH20 Silent p.R687R 0.16 TCGA-53-A4EZ-01 18 60645624 60645624 G T PHLPP1 Missense_Mutation p.G1372C 0.15 deleterious(0.05) probably_damaging(0.967) TCGA-53-A4EZ-01 18 66344149 66344149 A C TMX3 3'UTR 0.20 TCGA-53-A4EZ-01 18 9258052 9258052 C T ANKRD12 Missense_Mutation p.A1596V 0.31 tolerated_low_confidence(0.29) benign(0.002) TCGA-53-A4EZ-01 19 10103516 10103516 G T COL5A3 Missense_Mutation p.P612H 0.50 unknown(0) TCGA-53-A4EZ-01 19 10602328 10602328 C A KEAP1 Missense_Mutation p.G417V 0.42 deleterious(0) probably_damaging(0.987) TCGA-53-A4EZ-01 19 15807951 15807951 T G CYP4F12 3'UTR 0.28 TCGA-53-A4EZ-01 19 15807952 15807952 C T CYP4F12 3'UTR 0.28 TCGA-53-A4EZ-01 19 15990655 15990655 G C CYP4F2 Missense_Mutation p.R390G 0.42 deleterious(0) probably_damaging(0.999) TCGA-53-A4EZ-01 19 17476918 17476918 C T PLVAP Silent p.K152K 0.40 TCGA-53-A4EZ-01 19 17886849 17886849 C A FCHO1 Missense_Mutation p.P354H 0.43 deleterious(0) probably_damaging(0.986) TCGA-53-A4EZ-01 19 19166182 19166182 A T ARMC6 Missense_Mutation p.T378S 0.39 tolerated(0.32) benign(0.013) TCGA-53-A4EZ-01 19 22785241 22785241 C T AC011467.1 5'Flank 0.29 TCGA-53-A4EZ-01 19 24309421 24309421 G T ZNF254 Nonsense_Mutation p.E207* 0.30 TCGA-53-A4EZ-01 19 31048269 31048269 C A ZNF536 3'UTR 0.37 TCGA-53-A4EZ-01 19 35617782 35617782 G T LGI4 Silent p.R256R 0.27 TCGA-53-A4EZ-01 19 36349442 36349442 C - KIRREL2 Frame_Shift_Del p.Q116Nfs*29 0.22 TCGA-53-A4EZ-01 19 37118542 37118542 G T ZNF382 3'UTR 0.35 TCGA-53-A4EZ-01 19 40196477 40196477 C A LGALS14 5'UTR 0.22 TCGA-53-A4EZ-01 19 40419693 40419693 G A FCGBP Nonsense_Mutation p.Q1101* 0.25 TCGA-53-A4EZ-01 19 4307903 4307903 G C FSD1 Missense_Mutation p.A90P 0.44 deleterious(0.04) benign(0.001) TCGA-53-A4EZ-01 19 43244529 43244529 G A PSG3 Missense_Mutation p.P3L 0.22 deleterious(0.03) benign(0.016) TCGA-53-A4EZ-01 19 43579660 43579660 C A PSG2 Missense_Mutation p.Q185H 0.29 tolerated(0.05) benign(0.024) TCGA-53-A4EZ-01 19 45029168 45029168 G A CEACAM20 RNA 0.25 TCGA-53-A4EZ-01 19 4523626 4523626 C A PLIN5 Missense_Mutation p.G436C 0.41 deleterious_low_confidence(0.02) possibly_damaging(0.518) TCGA-53-A4EZ-01 19 45317416 45317416 G T BCAM Silent p.T264T 0.26 TCGA-53-A4EZ-01 19 47909636 47909636 C A MEIS3 Intron 0.31 TCGA-53-A4EZ-01 19 49671576 49671576 G C TRPM4 Missense_Mutation p.V170L 0.23 deleterious(0) probably_damaging(0.927) TCGA-53-A4EZ-01 19 51323223 51323223 G T KLK1 Missense_Mutation p.H189N 0.41 deleterious(0.01) probably_damaging(0.984) TCGA-53-A4EZ-01 19 51361807 51361807 A C KLK3 Missense_Mutation p.M196L 0.09 deleterious(0.01) possibly_damaging(0.497) TCGA-53-A4EZ-01 19 52249798 52249798 C A FPR1 Missense_Mutation p.W150C 0.27 deleterious(0) probably_damaging(1) TCGA-53-A4EZ-01 19 52249799 52249799 C A FPR1 Missense_Mutation p.W150L 0.28 deleterious(0) probably_damaging(1) TCGA-53-A4EZ-01 19 52272484 52272484 G T FPR2 Silent p.L191L 0.27 TCGA-53-A4EZ-01 19 52472297 52472297 C A ZNF350 Missense_Mutation p.D35Y 0.30 deleterious(0) probably_damaging(0.938) TCGA-53-A4EZ-01 19 53057985 53057985 C T ZNF808 Nonsense_Mutation p.Q606* 0.24 TCGA-53-A4EZ-01 19 53770625 53770625 G T VN1R4 Silent p.T98T 0.12 TCGA-53-A4EZ-01 19 53993751 53993751 G T ZNF813 Nonsense_Mutation p.E89* 0.30 TCGA-53-A4EZ-01 19 54418758 54418758 G T CACNG7 Silent p.S141S 0.24 TCGA-53-A4EZ-01 19 54778479 54778479 T A LILRB2 3'UTR 0.24 TCGA-53-A4EZ-01 19 55019257 55019257 G T LAIR2 Silent p.V74V 0.21 TCGA-53-A4EZ-01 19 55295409 55295409 A T KIR2DL1 3'UTR 0.66 TCGA-53-A4EZ-01 19 55418137 55418137 C T NCR1 Silent p.P109P 0.28 TCGA-53-A4EZ-01 19 55816900 55816900 A G BRSK1 Silent p.L612L 0.24 TCGA-53-A4EZ-01 19 55858682 55858682 C T SUV420H2 Silent p.A418A 0.64 TCGA-53-A4EZ-01 19 5594073 5594073 C A SAFB2 Missense_Mutation p.R679L 0.33 deleterious(0.01) possibly_damaging(0.726) TCGA-53-A4EZ-01 19 5600191 5600191 T A SAFB2 Missense_Mutation p.Q547L 0.42 tolerated(0.12) benign(0.109) TCGA-53-A4EZ-01 19 56599581 56599581 C G ZNF787 Silent p.V320V 0.19 TCGA-53-A4EZ-01 19 57328076 57328076 C T PEG3 Silent p.L578L 0.26 TCGA-53-A4EZ-01 19 57642670 57642670 C T USP29 Missense_Mutation p.S876F 0.26 deleterious(0) probably_damaging(0.925) TCGA-53-A4EZ-01 19 58018657 58018657 G T ZNF773 Missense_Mutation p.E398D 0.25 tolerated(0.06) possibly_damaging(0.814) TCGA-53-A4EZ-01 19 58189556 58189556 C A ZSCAN4 Silent p.G195G 0.23 TCGA-53-A4EZ-01 19 58452490 58452490 G A ZNF256 Silent p.L562L 0.28 TCGA-53-A4EZ-01 19 58455329 58455329 C A ZNF256 Nonsense_Mutation p.E45* 0.17 TCGA-53-A4EZ-01 19 9070910 9070910 G T MUC16 Silent p.P5512P 0.40 TCGA-53-A4EZ-01 19 9071639 9071639 G C MUC16 Missense_Mutation p.I5269M 0.43 unknown(0) TCGA-53-A4EZ-01 1 103345355 103345355 A T COL11A1 Missense_Mutation p.W1720R 0.45 unknown(0) TCGA-53-A4EZ-01 1 109803677 109803677 G T CELSR2 Missense_Mutation p.E1324D 0.46 deleterious(0.02) benign(0.408) TCGA-53-A4EZ-01 1 11316162 11316162 C A MTOR Missense_Mutation p.V198L 0.39 tolerated(1) possibly_damaging(0.59) TCGA-53-A4EZ-01 1 12837211 12837211 G T PRAMEF12 Silent p.S307S 0.27 TCGA-53-A4EZ-01 1 13695699 13695699 C A PRAMEF19 Missense_Mutation p.R422S 0.25 benign(0.311) TCGA-53-A4EZ-01 1 13719044 13719044 T A PRAMEF17 3'UTR 0.52 TCGA-53-A4EZ-01 1 14105513 14105513 A T PRDM2 Missense_Mutation p.H408L 0.29 probably_damaging(1) TCGA-53-A4EZ-01 1 150318555 150318555 T C PRPF3 Missense_Mutation p.Y568H 0.15 tolerated(0.27) benign(0.085) TCGA-53-A4EZ-01 1 150413467 150413467 A G RPRD2 Missense_Mutation p.E135G 0.12 tolerated_low_confidence(0.13) benign(0.445) TCGA-53-A4EZ-01 1 152129058 152129058 G T RPTN Missense_Mutation p.P173T 0.43 tolerated(0.21) benign(0.004) TCGA-53-A4EZ-01 1 152187755 152187755 G T HRNR Missense_Mutation p.S2117Y 0.11 unknown(0) TCGA-53-A4EZ-01 1 152189165 152189165 G T HRNR Missense_Mutation p.S1647Y 0.10 unknown(0) TCGA-53-A4EZ-01 1 152190575 152190575 G T HRNR Missense_Mutation p.S1177Y 0.08 unknown(0) TCGA-53-A4EZ-01 1 152325046 152325046 C G FLG2 Missense_Mutation p.G1739A 0.06 possibly_damaging(0.794) TCGA-53-A4EZ-01 1 152636700 152636700 G C LCE2D Missense_Mutation p.C40S 0.16 tolerated_low_confidence(0.54) unknown(0) TCGA-53-A4EZ-01 1 152777514 152777514 T A LCE1C 3'UTR 0.15 TCGA-53-A4EZ-01 1 153509822 153509822 T G S100A5 Missense_Mutation p.T77P 0.33 deleterious(0) benign(0.048) TCGA-53-A4EZ-01 1 153932556 153932556 C T SLC39A1 3'UTR 0.29 TCGA-53-A4EZ-01 1 154987363 154987363 G A ZBTB7B Missense_Mutation p.G110D 0.15 tolerated_low_confidence(0.73) benign(0.329) TCGA-53-A4EZ-01 1 154988244 154988244 G C ZBTB7B Missense_Mutation p.G404R 0.41 deleterious(0) probably_damaging(0.996) TCGA-53-A4EZ-01 1 15768970 15768970 G T CTRC Silent p.V86V 0.19 TCGA-53-A4EZ-01 1 15794005 15794005 T A CELA2A Missense_Mutation p.V255D 0.52 deleterious(0) probably_damaging(1) TCGA-53-A4EZ-01 1 158614141 158614141 G T SPTA1 Missense_Mutation p.R1414S 0.27 deleterious(0) probably_damaging(0.999) TCGA-53-A4EZ-01 1 159827942 159827942 G A VSIG8 Missense_Mutation p.T123I 0.32 deleterious(0) probably_damaging(0.993) TCGA-53-A4EZ-01 1 160723082 160723082 G T SLAMF7 3'UTR 0.50 TCGA-53-A4EZ-01 1 161018190 161018190 C G ARHGAP30 Missense_Mutation p.C874S 0.29 tolerated_low_confidence(1) benign(0) TCGA-53-A4EZ-01 1 161047401 161047401 G A PVRL4 Missense_Mutation p.T191M 0.19 tolerated(0.23) benign(0.276) TCGA-53-A4EZ-01 1 166896329 166896329 A T ILDR2 Missense_Mutation p.D323E 0.58 deleterious(0.01) probably_damaging(0.997) TCGA-53-A4EZ-01 1 167096672 167096672 C A DUSP27 Silent p.V768V 0.67 TCGA-53-A4EZ-01 1 169947325 169947325 C T KIFAP3 Splice_Site p.X600_splice 0.19 TCGA-53-A4EZ-01 1 171227273 171227273 C A FMO1 Missense_Mutation p.A16D 0.28 deleterious(0) possibly_damaging(0.903) TCGA-53-A4EZ-01 1 175372342 175372342 G A TNR Nonsense_Mutation p.R304* 0.37 TCGA-53-A4EZ-01 1 180062000 180062000 A G CEP350 Missense_Mutation p.K2254E 0.36 benign(0.001) TCGA-53-A4EZ-01 1 186375299 186375299 T C C1orf27 Missense_Mutation p.F362S 0.25 deleterious(0) probably_damaging(0.994) TCGA-53-A4EZ-01 1 198721774 198721774 G A PTPRC Missense_Mutation p.E1128K 0.32 tolerated(0.76) benign(0.06) TCGA-53-A4EZ-01 1 203316790 203316790 C A FMOD Silent p.T203T 0.44 TCGA-53-A4EZ-01 1 207317924 207317924 C A C4BPA Silent p.G552G 0.28 TCGA-53-A4EZ-01 1 207782941 207782941 G T CR1 Missense_Mutation p.R2068I 0.14 deleterious(0.01) benign(0.088) TCGA-53-A4EZ-01 1 20915692 20915692 G T CDA Nonsense_Mutation p.E24* 0.30 TCGA-53-A4EZ-01 1 214787134 214787134 C G CENPF Missense_Mutation p.P13A 0.40 probably_damaging(0.997) TCGA-53-A4EZ-01 1 214814636 214814636 C T CENPF Silent p.S985S 0.36 TCGA-53-A4EZ-01 1 237872779 237872779 G T RYR2 Splice_Site p.X3381_splice 0.31 TCGA-53-A4EZ-01 1 238051771 238051771 G T ZP4 Missense_Mutation p.P147Q 0.58 tolerated(0.58) benign(0.088) TCGA-53-A4EZ-01 1 248436446 248436446 A C OR2T33 Missense_Mutation p.L224R 0.36 deleterious(0.03) probably_damaging(0.996) TCGA-53-A4EZ-01 1 248458398 248458398 G T OR2T12 Silent p.T161T 0.43 TCGA-53-A4EZ-01 1 26515264 26515264 C A CNKSR1 Missense_Mutation p.D564E 0.19 tolerated(0.23) benign(0.073) TCGA-53-A4EZ-01 1 29040698 29040698 A T GMEB1 Missense_Mutation p.R379W 0.14 deleterious(0) probably_damaging(0.993) TCGA-53-A4EZ-01 1 33402592 33402592 C T RNF19B Missense_Mutation p.A672T 0.17 tolerated_low_confidence(1) benign(0.002) TCGA-53-A4EZ-01 1 33992801 33992801 G T CSMD2 Missense_Mutation p.A3266D 0.22 tolerated(0.2) benign(0.028) TCGA-53-A4EZ-01 1 34401428 34401428 G T CSMD2 Silent p.A175A 0.15 TCGA-53-A4EZ-01 1 38003406 38003406 T A SNIP1 Missense_Mutation p.E378D 0.35 deleterious(0.03) benign(0.32) TCGA-53-A4EZ-01 1 39798540 39798540 G T MACF1 Intron 0.37 TCGA-53-A4EZ-01 1 40557016 40557016 C G PPT1 Missense_Mutation p.G140R 0.28 deleterious(0) probably_damaging(1) TCGA-53-A4EZ-01 1 43212626 43212626 C A LEPRE1 Missense_Mutation p.G791V 0.22 tolerated_low_confidence(0.09) benign(0) TCGA-53-A4EZ-01 1 43240501 43240501 G A C1orf50 Missense_Mutation p.E126K 0.33 tolerated(0.09) benign(0.077) TCGA-53-A4EZ-01 1 46033703 46033703 G T AKR1A1 Missense_Mutation p.D136Y 0.32 deleterious(0.01) probably_damaging(0.925) TCGA-53-A4EZ-01 1 53975606 53975606 C T GLIS1 Missense_Mutation p.G485S 0.20 tolerated(0.2) benign(0.005) TCGA-53-A4EZ-01 1 57397542 57397542 C A C8B Missense_Mutation p.C521F 0.23 deleterious(0) probably_damaging(0.995) TCGA-53-A4EZ-01 1 62713232 62713232 G T KANK4 Missense_Mutation p.A932D 0.16 deleterious(0) probably_damaging(0.975) TCGA-53-A4EZ-01 1 69744 69744 C G OR4F5 Missense_Mutation p.I218M 0.18 deleterious(0.01) possibly_damaging(0.788) TCGA-53-A4EZ-01 1 7724999 7724999 G T CAMTA1 Missense_Mutation p.G798W 0.34 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-53-A4EZ-01 1 77333318 77333318 G A ST6GALNAC5 5'UTR 0.33 TCGA-53-A4EZ-01 1 77510083 77510083 C A ST6GALNAC5 Silent p.I152I 0.12 TCGA-53-A4EZ-01 1 86965587 86965587 A G CLCA1 Silent p.P868P 0.25 TCGA-53-A4EZ-01 1 87033308 87033308 T C CLCA4 Missense_Mutation p.C386R 0.22 deleterious(0) probably_damaging(1) TCGA-53-A4EZ-01 1 89658711 89658711 G T GBP4 Missense_Mutation p.S182R 0.12 deleterious(0.04) benign(0.017) TCGA-53-A4EZ-01 1 89844124 89844124 C T GBP6 Missense_Mutation p.P193S 0.18 tolerated(0.28) benign(0.009) TCGA-53-A4EZ-01 1 91816429 91816429 C T HFM1 Splice_Site p.X691_splice 0.15 TCGA-53-A4EZ-01 1 99753596 99753596 G T LPPR4 Nonsense_Mutation p.G100* 0.22 TCGA-53-A4EZ-01 20 13912311 13912311 T C SEL1L2 Missense_Mutation p.Q74R 0.23 tolerated(0.11) benign(0.074) TCGA-53-A4EZ-01 20 1584724 1584724 G T SIRPB1 Intron 0.38 TCGA-53-A4EZ-01 20 18505277 18505277 C - SEC23B Frame_Shift_Del p.R190Efs*6 0.24 TCGA-53-A4EZ-01 20 23065665 23065665 A T CD93 Missense_Mutation p.C389S 0.22 deleterious(0) probably_damaging(0.999) TCGA-53-A4EZ-01 20 23967075 23967075 G T GGTLC1 Silent p.L58L 0.18 TCGA-53-A4EZ-01 20 42354840 42354840 G T GTSF1L 3'UTR 0.45 TCGA-53-A4EZ-01 20 43385674 43385674 G A RIMS4 Silent p.A153A 0.38 TCGA-53-A4EZ-01 20 45905408 45905408 A C ZMYND8 Missense_Mutation p.F377C 0.43 deleterious(0) possibly_damaging(0.873) TCGA-53-A4EZ-01 20 46282333 46282333 A G NCOA3 3'UTR 0.55 TCGA-53-A4EZ-01 20 46282335 46282335 G T NCOA3 3'UTR 0.56 TCGA-53-A4EZ-01 20 46313216 46313216 G A SULF2 Missense_Mutation p.R283C 0.46 deleterious(0) probably_damaging(0.999) TCGA-53-A4EZ-01 20 50048656 50048656 C A NFATC2 Silent p.A890A 0.44 TCGA-53-A4EZ-01 20 55027043 55027043 G C CASS4 Missense_Mutation p.A271P 0.34 tolerated(0.27) benign(0.024) TCGA-53-A4EZ-01 20 55840829 55840829 G T BMP7 Missense_Mutation p.P117H 0.29 deleterious(0.04) probably_damaging(0.985) TCGA-53-A4EZ-01 20 57415080 57415080 C A RP4-806M20.3 5'Flank 0.34 TCGA-53-A4EZ-01 20 57829043 57829043 C A ZNF831 Missense_Mutation p.L1427M 0.33 tolerated(0.18) benign(0.01) TCGA-53-A4EZ-01 20 58490600 58490600 T A SYCP2 Silent p.I173I 0.26 TCGA-53-A4EZ-01 20 5903516 5903516 G T CHGB Missense_Mutation p.E242D 0.14 tolerated(0.15) benign(0.167) TCGA-53-A4EZ-01 20 61453480 61453480 C T COL9A3 Silent p.P147P 0.25 TCGA-53-A4EZ-01 20 61951699 61951699 G T COL20A1 Silent p.R1044R 0.24 TCGA-53-A4EZ-01 20 62521382 62521382 G T TPD52L2 3'UTR 0.27 TCGA-53-A4EZ-01 20 870938 870938 G T ANGPT4 Missense_Mutation p.T128K 0.21 deleterious(0) possibly_damaging(0.547) TCGA-53-A4EZ-01 20 870961 870961 C A ANGPT4 Missense_Mutation p.Q120H 0.14 deleterious(0.01) possibly_damaging(0.75) TCGA-53-A4EZ-01 21 10906892 10906892 G T TPTE 3'UTR 0.12 TCGA-53-A4EZ-01 21 11039208 11039208 G T BAGE2 RNA 0.08 TCGA-53-A4EZ-01 21 15561620 15561620 G T LIPI Missense_Mutation p.A77D 0.32 deleterious(0) probably_damaging(0.994) TCGA-53-A4EZ-01 21 32127495 32127495 G T KRTAP21-1 Silent p.R68R 0.27 TCGA-53-A4EZ-01 21 40555395 40555395 C A PSMG1 5'UTR 0.44 TCGA-53-A4EZ-01 21 41711093 41711093 T A DSCAM Missense_Mutation p.N487I 0.14 tolerated(0.17) possibly_damaging(0.864) TCGA-53-A4EZ-01 21 41711140 41711140 G T DSCAM Silent p.I471I 0.10 TCGA-53-A4EZ-01 21 41725582 41725582 C G DSCAM Silent p.A248A 0.18 TCGA-53-A4EZ-01 21 43309441 43309441 C T C2CD2 Missense_Mutation p.R628K 0.12 tolerated(0.43) probably_damaging(0.996) TCGA-53-A4EZ-01 21 43321826 43321826 C A C2CD2 Missense_Mutation p.A489S 0.39 deleterious(0) probably_damaging(0.998) TCGA-53-A4EZ-01 21 43802268 43802268 C A TMPRSS3 Missense_Mutation p.L286F 0.19 tolerated(0.05) benign(0.392) TCGA-53-A4EZ-01 21 43838679 43838679 C A UBASH3A Missense_Mutation p.T336K 0.19 deleterious(0) probably_damaging(0.966) TCGA-53-A4EZ-01 21 47632939 47632939 C A LSS Missense_Mutation p.Q379H 0.11 deleterious(0.02) probably_damaging(0.961) TCGA-53-A4EZ-01 22 16267033 16267033 G T POTEH Missense_Mutation p.N472K 0.04 deleterious_low_confidence(0.01) benign(0.26) TCGA-53-A4EZ-01 22 18368736 18368736 C A MICAL3 Missense_Mutation p.G717W 0.28 probably_damaging(0.993) TCGA-53-A4EZ-01 22 39884731 39884731 G T MGAT3 Missense_Mutation p.R460L 0.46 deleterious(0) possibly_damaging(0.774) TCGA-53-A4EZ-01 22 41921283 41921283 C A ACO2 Silent p.R564R 0.35 TCGA-53-A4EZ-01 2 100453950 100453950 C G AFF3 Missense_Mutation p.E329Q 0.23 deleterious(0) possibly_damaging(0.848) TCGA-53-A4EZ-01 2 101604651 101604651 G T NPAS2 Silent p.G580G 0.28 TCGA-53-A4EZ-01 2 105713767 105713767 G A MRPS9 Missense_Mutation p.E362K 0.23 deleterious(0) probably_damaging(0.974) TCGA-53-A4EZ-01 2 1094090 1094090 C G SNTG2 Missense_Mutation p.Q107E 0.27 deleterious(0) benign(0.257) TCGA-53-A4EZ-01 2 112566589 112566589 C A ANAPC1 Missense_Mutation p.G1256V 0.17 deleterious(0) probably_damaging(0.979) TCGA-53-A4EZ-01 2 112566590 112566590 C A ANAPC1 Missense_Mutation p.G1256C 0.18 deleterious(0) probably_damaging(0.994) TCGA-53-A4EZ-01 2 114002065 114002065 G T PAX8 Silent p.R110R 0.28 TCGA-53-A4EZ-01 2 119604508 119604508 G T EN1 Missense_Mutation p.P79Q 0.50 deleterious_low_confidence(0.03) unknown(0) TCGA-53-A4EZ-01 2 1251146 1251146 C A SNTG2 Silent p.S312S 0.30 TCGA-53-A4EZ-01 2 128341823 128341823 C A MYO7B Silent p.T490T 0.26 TCGA-53-A4EZ-01 2 128408967 128408967 C T GPR17 Missense_Mutation p.R248W 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-53-A4EZ-01 2 128495446 128495446 T A WDR33 Intron 0.48 TCGA-53-A4EZ-01 2 131981229 131981229 C A POTEE Missense_Mutation p.D194E 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.739) TCGA-53-A4EZ-01 2 141128827 141128827 T A LRP1B Missense_Mutation p.Y3599F 0.20 benign(0.418) TCGA-53-A4EZ-01 2 141359163 141359163 G T LRP1B Missense_Mutation p.T2282K 0.33 benign(0.403) TCGA-53-A4EZ-01 2 14774113 14774113 C A FAM84A Missense_Mutation p.Q4K 0.19 deleterious(0) possibly_damaging(0.857) TCGA-53-A4EZ-01 2 149247113 149247113 G T MBD5 Silent p.V1071V 0.25 TCGA-53-A4EZ-01 2 150426645 150426645 G A MMADHC Missense_Mutation p.T245I 0.44 deleterious(0) probably_damaging(0.97) TCGA-53-A4EZ-01 2 15330509 15330509 C G NBAS Missense_Mutation p.E2151Q 0.28 tolerated(0.18) benign(0.432) TCGA-53-A4EZ-01 2 162849639 162849639 T A DPP4 3'UTR 0.30 TCGA-53-A4EZ-01 2 165953840 165953840 A G SCN3A Silent p.L1387L 0.36 TCGA-53-A4EZ-01 2 168106649 168106649 C G XIRP2 Nonsense_Mutation p.S2916* 0.09 TCGA-53-A4EZ-01 2 168107617 168107617 A G XIRP2 Missense_Mutation p.T3239A 0.39 possibly_damaging(0.834) TCGA-53-A4EZ-01 2 171850278 171850278 C T TLK1 3'UTR 0.23 TCGA-53-A4EZ-01 2 176964532 176964532 G A HOXD12 Translation_Start_Site p.M1? 0.25 deleterious(0) probably_damaging(0.958) TCGA-53-A4EZ-01 2 17697660 17697660 G A RAD51AP2 Nonsense_Mutation p.Q675* 0.25 TCGA-53-A4EZ-01 2 17698014 17698014 T A RAD51AP2 Missense_Mutation p.T557S 0.49 deleterious(0.01) benign(0.083) TCGA-53-A4EZ-01 2 176988678 176988678 C A HOXD9 Missense_Mutation p.N278K 0.34 deleterious(0) probably_damaging(0.913) TCGA-53-A4EZ-01 2 179418845 179418845 T C TTN Missense_Mutation p.I29665V 0.33 TCGA-53-A4EZ-01 2 179423190 179423190 T A TTN Missense_Mutation p.H28999L 0.37 TCGA-53-A4EZ-01 2 179474468 179474468 C A TTN Missense_Mutation p.A17228S 0.32 TCGA-53-A4EZ-01 2 179495636 179495636 A T TTN Missense_Mutation p.S14683R 0.28 TCGA-53-A4EZ-01 2 179596623 179596623 A C TTN Missense_Mutation p.V5660G 0.31 TCGA-53-A4EZ-01 2 182396457 182396457 C T ITGA4 Missense_Mutation p.A913V 0.10 tolerated(0.3) benign(0.043) TCGA-53-A4EZ-01 2 185802877 185802877 C T ZNF804A Silent p.V918V 0.14 TCGA-53-A4EZ-01 2 187709478 187709478 C A ZSWIM2 Missense_Mutation p.L83F 0.27 deleterious(0) probably_damaging(0.97) TCGA-53-A4EZ-01 2 189873722 189873722 G T COL3A1 Missense_Mutation p.V1200F 0.32 unknown(0) TCGA-53-A4EZ-01 2 197708648 197708648 C A PGAP1 Missense_Mutation p.S830I 0.27 tolerated(0.11) benign(0.025) TCGA-53-A4EZ-01 2 198260781 198260781 T G SF3B1 Silent p.R1180R 0.23 TCGA-53-A4EZ-01 2 198949311 198949311 T G PLCL1 Missense_Mutation p.I357R 0.32 deleterious(0) probably_damaging(0.995) TCGA-53-A4EZ-01 2 200246414 200246414 C T SATB2 Intron 0.19 TCGA-53-A4EZ-01 2 20101527 20101527 A T TTC32 Missense_Mutation p.L30Q 0.31 deleterious(0) probably_damaging(0.963) TCGA-53-A4EZ-01 2 204732572 204732572 G T CTLA4 5'UTR 0.22 TCGA-53-A4EZ-01 2 211542681 211542681 G T CPS1 Missense_Mutation p.R1498M 0.25 deleterious(0.01) possibly_damaging(0.896) TCGA-53-A4EZ-01 2 21236217 21236217 T A APOB Missense_Mutation p.K1344M 0.35 possibly_damaging(0.594) TCGA-53-A4EZ-01 2 222429063 222429063 G T EPHA4 Missense_Mutation p.Q71K 0.25 deleterious(0) possibly_damaging(0.893) TCGA-53-A4EZ-01 2 231775340 231775340 C G GPR55 Missense_Mutation p.C113S 0.31 tolerated(0.15) benign(0.021) TCGA-53-A4EZ-01 2 232322391 232322391 A T NCL Missense_Mutation p.N470K 0.14 benign(0.053) TCGA-53-A4EZ-01 2 233839634 233839634 C T NGEF 5'UTR 0.37 TCGA-53-A4EZ-01 2 235962337 235962337 G T SH3BP4 Missense_Mutation p.K923N 0.24 deleterious(0) benign(0.305) TCGA-53-A4EZ-01 2 240016505 240016505 T A HDAC4 Intron 0.22 TCGA-53-A4EZ-01 2 241622265 241622265 C A AQP12B 5'UTR 0.54 TCGA-53-A4EZ-01 2 242813912 242813912 C A CXXC11 Missense_Mutation p.H69N 0.33 tolerated(0.13) benign(0.12) TCGA-53-A4EZ-01 2 28805269 28805269 C A PLB1 Intron 0.26 TCGA-53-A4EZ-01 2 30791030 30791030 C T LCLAT1 Missense_Mutation p.R244C 0.32 tolerated(0.09) benign(0.051) TCGA-53-A4EZ-01 2 30987006 30987006 G A CAPN13 Missense_Mutation p.P231S 0.31 tolerated(0.43) benign(0.378) TCGA-53-A4EZ-01 2 31596795 31596795 C A XDH Missense_Mutation p.A544S 0.13 tolerated(0.72) benign(0.004) TCGA-53-A4EZ-01 2 37292050 37292050 C A HEATR5B Missense_Mutation p.A473S 0.29 tolerated(0.07) benign(0.331) TCGA-53-A4EZ-01 2 40656544 40656544 C G SLC8A1 Missense_Mutation p.G293R 0.22 deleterious(0.02) probably_damaging(0.975) TCGA-53-A4EZ-01 2 45233558 45233558 T C SIX2 Silent p.L209L 0.33 TCGA-53-A4EZ-01 2 66798466 66798467 - C MEIS1 3'UTR 0.38 TCGA-53-A4EZ-01 2 669399 669399 C A TMEM18 3'UTR 0.38 TCGA-53-A4EZ-01 2 71297697 71297697 G A NAGK Missense_Mutation p.G78E 0.19 deleterious(0.02) probably_damaging(0.997) TCGA-53-A4EZ-01 2 73717765 73717765 C T ALMS1 Silent p.A2892A 0.22 TCGA-53-A4EZ-01 2 73799566 73799566 A G ALMS1 Missense_Mutation p.K3520R 0.38 possibly_damaging(0.858) TCGA-53-A4EZ-01 2 75280860 75280860 G T TACR1 Missense_Mutation p.L203M 0.30 deleterious(0) probably_damaging(0.996) TCGA-53-A4EZ-01 2 77745812 77745812 T A LRRTM4 Missense_Mutation p.T395S 0.19 tolerated(0.8) benign(0.005) TCGA-53-A4EZ-01 2 77745979 77745979 C A LRRTM4 Missense_Mutation p.C339F 0.19 deleterious(0) probably_damaging(0.997) TCGA-53-A4EZ-01 2 79386638 79386638 C A REG3A 5'UTR 0.17 TCGA-53-A4EZ-01 2 84660552 84660552 C A SUCLG1 Silent p.V199V 0.17 TCGA-53-A4EZ-01 2 88991265 88991265 C G RPIA Missense_Mutation p.P17A 0.15 deleterious_low_confidence(0) possibly_damaging(0.696) TCGA-53-A4EZ-01 2 89157116 89157116 G A IGKC Silent p.L28L 0.33 TCGA-53-A4EZ-01 2 98430460 98430460 C G TMEM131 Missense_Mutation p.V531L 0.47 tolerated(0.32) probably_damaging(0.998) TCGA-53-A4EZ-01 3 111343228 111343228 C A CD96 Missense_Mutation p.S449Y 0.32 tolerated(0.08) probably_damaging(0.915) TCGA-53-A4EZ-01 3 118621508 118621508 C T IGSF11 Missense_Mutation p.M385I 0.29 tolerated(0.12) benign(0.002) TCGA-53-A4EZ-01 3 119426274 119426274 C T MAATS1 Silent p.T75T 0.22 TCGA-53-A4EZ-01 3 121350712 121350712 T A HCLS1 Missense_Mutation p.Y481F 0.21 deleterious(0.04) benign(0.153) TCGA-53-A4EZ-01 3 121822559 121822559 G C CD86 Missense_Mutation p.D89H 0.27 deleterious(0) probably_damaging(0.999) TCGA-53-A4EZ-01 3 122354802 122354802 G C PARP15 Missense_Mutation p.G631A 0.28 tolerated(0.05) benign(0.07) TCGA-53-A4EZ-01 3 123953765 123953765 G T KALRN Missense_Mutation p.V78L 0.26 tolerated(0.93) benign(0.226) TCGA-53-A4EZ-01 3 125166626 125166626 C T SNX4 Missense_Mutation p.M450I 0.20 tolerated(0.21) benign(0.138) TCGA-53-A4EZ-01 3 125279256 125279256 C T OSBPL11 Silent p.L374L 0.28 TCGA-53-A4EZ-01 3 125872151 125872151 G T ALDH1L1 Intron 0.29 TCGA-53-A4EZ-01 3 130293358 130293358 C T COL6A6 Missense_Mutation p.A1179V 0.15 tolerated(0.3) benign(0.022) TCGA-53-A4EZ-01 3 130698184 130698184 A C ATP2C1 Missense_Mutation p.E588D 0.30 tolerated(0.25) benign(0.045) TCGA-53-A4EZ-01 3 133166199 133166199 G C BFSP2 Silent p.L176L 0.28 TCGA-53-A4EZ-01 3 134366295 134366295 C G KY Missense_Mutation p.E61Q 0.27 tolerated_low_confidence(0.31) benign(0.019) TCGA-53-A4EZ-01 3 140401406 140401406 G T TRIM42 Missense_Mutation p.M148I 0.23 tolerated(0.32) benign(0.001) TCGA-53-A4EZ-01 3 140692565 140692565 G C SLC25A36 Missense_Mutation p.G154R 0.26 deleterious(0.04) benign(0.015) TCGA-53-A4EZ-01 3 147113970 147113970 G C ZIC4 Nonsense_Mutation p.Y169* 0.27 TCGA-53-A4EZ-01 3 148871334 148871334 A G HPS3 Missense_Mutation p.I433M 0.28 deleterious(0) probably_damaging(0.965) TCGA-53-A4EZ-01 3 154147311 154147311 G T GPR149 Missense_Mutation p.L32M 0.31 deleterious(0.05) possibly_damaging(0.682) TCGA-53-A4EZ-01 3 165548009 165548009 C A BCHE Silent p.T271T 0.26 TCGA-53-A4EZ-01 3 170715647 170715647 G T SLC2A2 3'UTR 0.23 TCGA-53-A4EZ-01 3 178560587 178560587 C A KCNMB2 Silent p.L190L 0.34 TCGA-53-A4EZ-01 3 179533662 179533662 G - PEX5L Frame_Shift_Del p.P357Lfs*12 0.23 TCGA-53-A4EZ-01 3 183756295 183756295 C A HTR3D Missense_Mutation p.P340T 0.27 deleterious(0) probably_damaging(0.996) TCGA-53-A4EZ-01 3 183756296 183756296 C A HTR3D Missense_Mutation p.P340H 0.26 deleterious(0) probably_damaging(0.999) TCGA-53-A4EZ-01 3 189582206 189582206 G T TP63 Missense_Mutation p.E255D 0.32 tolerated(0.37) benign(0.005) TCGA-53-A4EZ-01 3 193361891 193361891 C G OPA1 Missense_Mutation p.S517R 0.24 tolerated(0.1) benign(0.003) TCGA-53-A4EZ-01 3 194080148 194080148 G C LRRC15 Missense_Mutation p.A548G 0.26 tolerated(0.14) probably_damaging(0.991) TCGA-53-A4EZ-01 3 195593858 195593858 C G TNK2 Silent p.R1052R 0.29 TCGA-53-A4EZ-01 3 20141433 20141433 C T KAT2B Missense_Mutation p.P219L 0.26 tolerated(0.08) probably_damaging(0.914) TCGA-53-A4EZ-01 3 3111859 3111859 C A IL5RA 3'UTR 0.34 TCGA-53-A4EZ-01 3 38766752 38766752 G A SCN10A Silent p.S1047S 0.62 TCGA-53-A4EZ-01 3 42260987 42260987 G A TRAK1 Silent p.A655A 0.35 TCGA-53-A4EZ-01 3 49869403 49869403 C A TRAIP Missense_Mutation p.R328L 0.49 tolerated(0.31) benign(0.004) TCGA-53-A4EZ-01 3 49899271 49899271 C T CAMKV Silent p.L85L 0.39 TCGA-53-A4EZ-01 3 52847316 52847316 C G ITIH4 3'UTR 0.58 TCGA-53-A4EZ-01 3 58855172 58855172 C A C3orf67 Silent p.P174P 0.55 TCGA-53-A4EZ-01 3 64619502 64619502 C A ADAMTS9 Missense_Mutation p.C637F 0.38 deleterious(0) probably_damaging(1) TCGA-53-A4EZ-01 3 73432879 73432879 G T PDZRN3 Silent p.R946R 0.39 TCGA-53-A4EZ-01 3 88040644 88040644 A T HTR1F Nonsense_Mutation p.K249* 0.28 TCGA-53-A4EZ-01 3 89156733 89156733 G C EPHA3 5'UTR 0.58 TCGA-53-A4EZ-01 3 9862310 9862310 G T TTLL3 Nonsense_Mutation p.E347* 0.41 TCGA-53-A4EZ-01 4 10079447 10079447 T A WDR1 Missense_Mutation p.D500V 0.35 deleterious(0) possibly_damaging(0.701) TCGA-53-A4EZ-01 4 110663662 110663663 - T CFI Frame_Shift_Ins p.E507Rfs*9 0.34 TCGA-53-A4EZ-01 4 126370038 126370038 A G FAT4 Missense_Mutation p.I2623V 0.33 benign(0.042) TCGA-53-A4EZ-01 4 141607590 141607590 G A TBC1D9 Missense_Mutation p.H90Y 0.46 deleterious(0) possibly_damaging(0.608) TCGA-53-A4EZ-01 4 155490675 155490675 G T FGB Missense_Mutation p.W323L 0.47 deleterious(0) probably_damaging(1) TCGA-53-A4EZ-01 4 156135542 156135542 T C NPY2R Missense_Mutation p.C151R 0.50 deleterious(0) probably_damaging(0.972) TCGA-53-A4EZ-01 4 162463828 162463828 C A FSTL5 Missense_Mutation p.V345L 0.30 deleterious(0.01) probably_damaging(0.977) TCGA-53-A4EZ-01 4 169602532 169602532 A G PALLD Silent p.R379R 0.46 TCGA-53-A4EZ-01 4 183609453 183609453 G A TENM3 Missense_Mutation p.D724N 0.42 tolerated(0.37) probably_damaging(0.956) TCGA-53-A4EZ-01 4 20259527 20259527 A G SLIT2 Silent p.R96R 0.18 TCGA-53-A4EZ-01 4 44631448 44631448 C A YIPF7 Missense_Mutation p.C157F 0.29 deleterious(0.03) benign(0.272) TCGA-53-A4EZ-01 4 53254 53254 C T ZNF595 5'UTR 0.10 TCGA-53-A4EZ-01 4 65188444 65188444 T C TECRL Missense_Mutation p.Y133C 0.37 deleterious(0) probably_damaging(0.999) TCGA-53-A4EZ-01 4 66467428 66467428 C A EPHA5 Nonsense_Mutation p.E281* 0.41 TCGA-53-A4EZ-01 4 7026818 7026818 G T TBC1D14 Silent p.L615L 0.44 TCGA-53-A4EZ-01 4 73188762 73188762 A G ADAMTS3 Missense_Mutation p.L305P 0.33 deleterious(0) probably_damaging(0.988) TCGA-53-A4EZ-01 4 73188815 73188815 C A ADAMTS3 Splice_Site p.X288_splice 0.29 TCGA-53-A4EZ-01 4 73188816 73188816 T A ADAMTS3 Splice_Site p.X288_splice 0.30 TCGA-53-A4EZ-01 4 76785659 76785659 C T PPEF2 Missense_Mutation p.E648K 0.23 deleterious(0.02) benign(0.055) TCGA-53-A4EZ-01 4 81187941 81187941 C A FGF5 5'UTR 0.41 TCGA-53-A4EZ-01 4 89311904 89311904 G T HERC6 Missense_Mutation p.E179D 0.17 tolerated(0.49) benign(0.06) TCGA-53-A4EZ-01 4 90844375 90844375 G T MMRN1 Missense_Mutation p.G303C 0.37 deleterious(0.01) possibly_damaging(0.907) TCGA-53-A4EZ-01 4 96761333 96761333 G T PDHA2 Missense_Mutation p.R11M 0.24 tolerated(0.12) benign(0.058) TCGA-53-A4EZ-01 5 1222054 1222054 T A SLC6A19 3'UTR 0.23 TCGA-53-A4EZ-01 5 126705694 126705694 G T MEGF10 Missense_Mutation p.A138S 0.39 tolerated(0.08) possibly_damaging(0.816) TCGA-53-A4EZ-01 5 128887598 128887598 T C ADAMTS19 Missense_Mutation p.V451A 0.43 deleterious(0.01) probably_damaging(0.976) TCGA-53-A4EZ-01 5 130970732 130970732 C A RAPGEF6 5'UTR 0.50 TCGA-53-A4EZ-01 5 131007450 131007450 C A FNIP1 Missense_Mutation p.C896F 0.42 tolerated(0.06) benign(0.181) TCGA-53-A4EZ-01 5 131008450 131008450 C G FNIP1 Missense_Mutation p.V563L 0.33 tolerated(0.07) probably_damaging(0.997) TCGA-53-A4EZ-01 5 139892967 139892967 A T ANKHD1 Missense_Mutation p.H1407L 0.39 benign(0.227) TCGA-53-A4EZ-01 5 139908662 139908662 C T ANKHD1 Missense_Mutation p.P2044L 0.42 possibly_damaging(0.462) TCGA-53-A4EZ-01 5 140176162 140176162 G T PCDHA2 Missense_Mutation p.R538L 0.39 deleterious_low_confidence(0.01) benign(0.323) TCGA-53-A4EZ-01 5 140230181 140230181 A G PCDHA9 Missense_Mutation p.I701V 0.38 tolerated_low_confidence(0.07) benign(0.2) TCGA-53-A4EZ-01 5 140554833 140554833 C A PCDHB7 3'UTR 0.21 TCGA-53-A4EZ-01 5 140559275 140559275 G T PCDHB8 Missense_Mutation p.D554Y 0.15 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-53-A4EZ-01 5 140574266 140574266 G T PCDHB10 Missense_Mutation p.R714L 0.40 deleterious_low_confidence(0.01) benign(0.335) TCGA-53-A4EZ-01 5 140725605 140725605 C T PCDHGA3 Missense_Mutation p.P669S 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.712) TCGA-53-A4EZ-01 5 140744375 140744375 G A PCDHGA5 Missense_Mutation p.A160T 0.37 deleterious_low_confidence(0.01) benign(0.099) TCGA-53-A4EZ-01 5 140789649 140789649 G A PCDHGB6 Missense_Mutation p.R627H 0.26 deleterious(0) possibly_damaging(0.773) TCGA-53-A4EZ-01 5 1422008 1422008 C A SLC6A3 Missense_Mutation p.V259L 0.11 deleterious(0.02) possibly_damaging(0.902) TCGA-53-A4EZ-01 5 142662288 142662288 G A NR3C1 Missense_Mutation p.P677S 0.12 deleterious(0) probably_damaging(1) TCGA-53-A4EZ-01 5 14286999 14286999 G T TRIO Missense_Mutation p.G123C 0.11 probably_damaging(1) TCGA-53-A4EZ-01 5 149501447 149501447 G T PDGFRB Silent p.P780P 0.46 TCGA-53-A4EZ-01 5 151183479 151183479 G A G3BP1 Missense_Mutation p.V410I 0.40 tolerated(0.07) benign(0.096) TCGA-53-A4EZ-01 5 156899460 156899460 C T NIPAL4 Missense_Mutation p.A298V 0.35 deleterious(0.03) probably_damaging(0.936) TCGA-53-A4EZ-01 5 161118972 161118972 C A GABRA6 Silent p.T284T 0.35 TCGA-53-A4EZ-01 5 169116310 169116310 G C DOCK2 Missense_Mutation p.M272I 0.31 tolerated(0.22) benign(0.027) TCGA-53-A4EZ-01 5 178339720 178339720 G T ZFP2 Intron 0.35 TCGA-53-A4EZ-01 5 23523455 23523455 C A PRDM9 Missense_Mutation p.A313D 0.28 deleterious(0) benign(0.006) TCGA-53-A4EZ-01 5 23526403 23526404 TC - PRDM9 Frame_Shift_Del p.L403Qfs*45 0.22 TCGA-53-A4EZ-01 5 26881502 26881502 G C CDH9 Missense_Mutation p.P705A 0.14 tolerated(0.12) probably_damaging(0.998) TCGA-53-A4EZ-01 5 26915837 26915837 C A CDH9 Nonsense_Mutation p.E142* 0.35 TCGA-53-A4EZ-01 5 37022345 37022345 G T NIPBL Splice_Site p.X1810_splice 0.14 TCGA-53-A4EZ-01 5 43381978 43381978 T A CCL28 Missense_Mutation p.H123L 0.27 deleterious(0.04) benign(0.001) TCGA-53-A4EZ-01 5 69730848 69730848 G T GTF2H2B Intron 0.42 TCGA-53-A4EZ-01 5 82875931 82875931 G A VCAN Missense_Mutation p.R3338Q 0.41 deleterious(0) probably_damaging(0.998) TCGA-53-A4EZ-01 5 94956180 94956180 G C GPR150 Silent p.L67L 0.44 TCGA-53-A4EZ-01 6 102266253 102266253 G T GRIK2 Silent p.T404T 0.39 TCGA-53-A4EZ-01 6 112441595 112441595 A T LAMA4 Missense_Mutation p.F1519Y 0.30 tolerated(0.23) probably_damaging(0.999) TCGA-53-A4EZ-01 6 114378575 114378575 C A HS3ST5 Missense_Mutation p.R296L 0.37 deleterious(0.01) benign(0.309) TCGA-53-A4EZ-01 6 116542390 116542390 G T NT5DC1 Missense_Mutation p.G235W 0.36 deleterious(0) probably_damaging(1) TCGA-53-A4EZ-01 6 133005630 133005630 C A VNN1 Missense_Mutation p.L401F 0.14 deleterious(0) probably_damaging(0.999) TCGA-53-A4EZ-01 6 146127505 146127505 A G FBXO30 Missense_Mutation p.C13R 0.48 deleterious(0) probably_damaging(0.999) TCGA-53-A4EZ-01 6 146719960 146719960 A T GRM1 Silent p.I595I 0.45 TCGA-53-A4EZ-01 6 163149344 163149344 A T PACRG Missense_Mutation p.Q26L 0.38 deleterious_low_confidence(0.01) benign(0.001) TCGA-53-A4EZ-01 6 30525057 30525057 A C PRR3 5'UTR 0.69 TCGA-53-A4EZ-01 6 32139277 32139277 G A AGPAT1 5'UTR 0.55 TCGA-53-A4EZ-01 6 33179586 33179586 A G RING1 Missense_Mutation p.Q309R 0.29 tolerated(0.74) unknown(0) TCGA-53-A4EZ-01 6 51915070 51915070 C T PKHD1 Missense_Mutation p.A722T 0.48 deleterious(0.04) benign(0.178) TCGA-53-A4EZ-01 6 54806377 54806377 C A FAM83B Missense_Mutation p.P870T 0.41 tolerated(0.39) benign(0.05) TCGA-53-A4EZ-01 6 56846670 56846670 G A BEND6 Missense_Mutation p.R21K 0.51 deleterious_low_confidence(0) possibly_damaging(0.745) TCGA-53-A4EZ-01 6 79664946 79664947 - AC PHIP Intron 0.35 TCGA-53-A4EZ-01 6 87994303 87994303 A T GJB7 Missense_Mutation p.Y110N 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-53-A4EZ-01 6 99893964 99893964 G C USP45 Missense_Mutation p.L562V 0.35 tolerated(0.16) possibly_damaging(0.777) TCGA-53-A4EZ-01 7 100490921 100490921 G C ACHE Silent p.V311V 0.30 TCGA-53-A4EZ-01 7 100677014 100677014 G A MUC17 Missense_Mutation p.D773N 0.28 unknown(0) TCGA-53-A4EZ-01 7 100683643 100683643 T C MUC17 Silent p.P2982P 0.40 TCGA-53-A4EZ-01 7 100807676 100807676 C T VGF Missense_Mutation p.S150N 0.29 tolerated_low_confidence(0.19) benign(0.33) TCGA-53-A4EZ-01 7 100817807 100817807 C T NAT16 Silent p.T94T 0.39 TCGA-53-A4EZ-01 7 121755201 121755201 C G AASS Missense_Mutation p.D324H 0.33 deleterious(0.04) probably_damaging(0.995) TCGA-53-A4EZ-01 7 122774551 122774551 C A SLC13A1 Missense_Mutation p.G282V 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-53-A4EZ-01 7 122774575 122774575 G T SLC13A1 Missense_Mutation p.P274H 0.41 deleterious(0) probably_damaging(1) TCGA-53-A4EZ-01 7 123152229 123152229 G A IQUB Missense_Mutation p.H56Y 0.24 tolerated_low_confidence(0.37) benign(0) TCGA-53-A4EZ-01 7 138341212 138341212 T C SVOPL Missense_Mutation p.Y172C 0.37 tolerated(0.1) possibly_damaging(0.755) TCGA-53-A4EZ-01 7 139724636 139724636 G A PARP12 Silent p.S610S 0.13 TCGA-53-A4EZ-01 7 140159583 140159583 A G MKRN1 Silent p.F156F 0.23 TCGA-53-A4EZ-01 7 140453155 140453155 C T BRAF Missense_Mutation p.D594N 0.33 deleterious(0) possibly_damaging(0.803) TCGA-53-A4EZ-01 7 142423407 142423407 C A TRBV27 Silent p.A21A 0.31 TCGA-53-A4EZ-01 7 142498917 142498917 A T TRBC2 Missense_Mutation p.E65V 0.17 deleterious(0) benign(0.326) TCGA-53-A4EZ-01 7 143554372 143554372 G T FAM115A Silent p.P859P 0.18 TCGA-53-A4EZ-01 7 143747922 143747922 T G OR2A5 Missense_Mutation p.V143G 0.39 tolerated(0.11) benign(0.008) TCGA-53-A4EZ-01 7 14378206 14378206 C A DGKB Nonsense_Mutation p.E687* 0.14 TCGA-53-A4EZ-01 7 148963539 148963539 G T ZNF783 Silent p.V46V 0.21 TCGA-53-A4EZ-01 7 149521586 149521586 G T SSPO RNA 0.35 TCGA-53-A4EZ-01 7 150491119 150491119 C G TMEM176B Missense_Mutation p.G82A 0.15 deleterious(0) probably_damaging(0.995) TCGA-53-A4EZ-01 7 150747241 150747241 G A ASIC3 Missense_Mutation p.G195R 0.23 tolerated(0.13) probably_damaging(1) TCGA-53-A4EZ-01 7 150747242 150747242 G T ASIC3 Missense_Mutation p.G195V 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-53-A4EZ-01 7 154143391 154143391 C A DPP6 Silent p.T112T 0.17 TCGA-53-A4EZ-01 7 154519508 154519508 G C DPP6 Missense_Mutation p.C265S 0.41 tolerated(0.12) possibly_damaging(0.693) TCGA-53-A4EZ-01 7 16737811 16737811 G T BZW2 Missense_Mutation p.A370S 0.26 tolerated(0.25) benign(0.012) TCGA-53-A4EZ-01 7 20795294 20795294 G C ABCB5 3'UTR 0.19 TCGA-53-A4EZ-01 7 27183016 27183016 G T HOXA5 Missense_Mutation p.R71S 0.18 tolerated(0.47) benign(0.004) TCGA-53-A4EZ-01 7 27205035 27205035 C T HOXA9 Silent p.S14S 0.25 TCGA-53-A4EZ-01 7 41729622 41729622 G T INHBA Missense_Mutation p.H303N 0.30 tolerated(0.61) benign(0.098) TCGA-53-A4EZ-01 7 42004819 42004819 G T GLI3 Silent p.T1284T 0.32 TCGA-53-A4EZ-01 7 44268414 44268414 T A CAMK2B Silent p.L483L 0.31 TCGA-53-A4EZ-01 7 63720684 63720684 G T ZNF679 Missense_Mutation p.R42I 0.11 deleterious(0) probably_damaging(0.999) TCGA-53-A4EZ-01 7 63726647 63726647 C A ZNF679 Nonsense_Mutation p.Y212* 0.37 TCGA-53-A4EZ-01 7 69364338 69364338 C T AUTS2 Nonsense_Mutation p.R126* 0.39 TCGA-53-A4EZ-01 7 73771660 73771660 C A CLIP2 Silent p.A356A 0.11 TCGA-53-A4EZ-01 7 74197867 74197867 G A NCF1 Splice_Site p.X192_splice 0.37 TCGA-53-A4EZ-01 7 82546111 82546111 C A PCLO Nonsense_Mutation p.E3731* 0.19 TCGA-53-A4EZ-01 7 95157280 95157280 G A ASB4 Missense_Mutation p.A215T 0.29 deleterious(0.05) probably_damaging(0.996) TCGA-53-A4EZ-01 7 98529064 98529064 C G TRRAP Missense_Mutation p.L1210V 0.38 benign(0.099) TCGA-53-A4EZ-01 7 99319930 99319930 T C CYP3A7 Silent p.R69R 0.33 TCGA-53-A4EZ-01 7 99771559 99771559 C T GPC2 Missense_Mutation p.R264Q 0.39 tolerated(0.21) benign(0.057) TCGA-53-A4EZ-01 8 103664248 103664248 A G KLF10 Silent p.S104S 0.26 TCGA-53-A4EZ-01 8 10388886 10388886 T A PRSS55 Silent p.I143I 0.45 TCGA-53-A4EZ-01 8 105261040 105261040 G A RIMS2 Missense_Mutation p.M1196I 0.24 tolerated_low_confidence(0.15) possibly_damaging(0.695) TCGA-53-A4EZ-01 8 105261041 105261041 G T RIMS2 Missense_Mutation p.G1197C 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-53-A4EZ-01 8 113871483 113871483 C A CSMD3 Missense_Mutation p.G549V 0.37 deleterious(0) probably_damaging(0.949) TCGA-53-A4EZ-01 8 120431371 120431371 C T NOV Missense_Mutation p.A188V 0.17 tolerated(0.23) possibly_damaging(0.742) TCGA-53-A4EZ-01 8 124515577 124515577 G A FBXO32 3'UTR 0.58 TCGA-53-A4EZ-01 8 124710642 124710642 G T ANXA13 Missense_Mutation p.T156K 0.23 deleterious(0) probably_damaging(0.91) TCGA-53-A4EZ-01 8 131793007 131793007 G T ADCY8 Silent p.R1129R 0.51 TCGA-53-A4EZ-01 8 139164093 139164093 G T FAM135B Silent p.T875T 0.48 TCGA-53-A4EZ-01 8 139189617 139189617 A G FAM135B Missense_Mutation p.L359P 0.21 tolerated(0.22) benign(0.004) TCGA-53-A4EZ-01 8 141567330 141567330 G A AGO2 Missense_Mutation p.P295L 0.48 deleterious(0) probably_damaging(0.93) TCGA-53-A4EZ-01 8 143545834 143545834 C A BAI1 Missense_Mutation p.P92H 0.40 tolerated(0.14) possibly_damaging(0.893) TCGA-53-A4EZ-01 8 145745099 145745099 G T LRRC14 5'UTR 0.45 TCGA-53-A4EZ-01 8 25258556 25258556 G C DOCK5 Missense_Mutation p.E1634Q 0.50 deleterious(0) probably_damaging(0.976) TCGA-53-A4EZ-01 8 27764705 27764705 C T SCARA5 Silent p.K352K 0.46 TCGA-53-A4EZ-01 8 30706483 30706483 C G TEX15 Missense_Mutation p.W17C 0.48 deleterious(0) benign(0.438) TCGA-53-A4EZ-01 8 30933709 30933709 G A WRN Missense_Mutation p.D249N 0.37 tolerated(0.11) possibly_damaging(0.455) TCGA-53-A4EZ-01 8 30958372 30958372 G T WRN Silent p.T663T 0.48 TCGA-53-A4EZ-01 8 42287680 42287680 C A SLC20A2 Silent p.L537L 0.51 TCGA-53-A4EZ-01 8 43171096 43171096 C A POTEA RNA 0.43 TCGA-53-A4EZ-01 8 43197329 43197329 G C POTEA Splice_Site 0.51 TCGA-53-A4EZ-01 8 51362235 51362236 - A SNTG1 Frame_Shift_Ins p.E77Rfs*3 0.26 TCGA-53-A4EZ-01 8 57025616 57025616 G T MOS Missense_Mutation p.P309H 0.38 tolerated(0.39) possibly_damaging(0.759) TCGA-53-A4EZ-01 8 72111644 72111644 G T EYA1 Silent p.P570P 0.34 TCGA-53-A4EZ-01 8 77766437 77766437 C T ZFHX4 Missense_Mutation p.P2427L 0.38 benign(0.009) TCGA-53-A4EZ-01 8 89339376 89339376 C A MMP16 Silent p.V20V 0.18 TCGA-53-A4EZ-01 8 90965538 90965538 T A NBN Silent p.P593P 0.49 TCGA-53-A4EZ-01 9 105768040 105768040 T A CYLC2 3'UTR 0.37 TCGA-53-A4EZ-01 9 105768042 105768042 G T CYLC2 3'UTR 0.37 TCGA-53-A4EZ-01 9 114156556 114156556 C A KIAA0368 Missense_Mutation p.V1114L 0.29 tolerated(0.63) benign(0.005) TCGA-53-A4EZ-01 9 116132330 116132330 G T BSPRY Missense_Mutation p.G373C 0.20 tolerated(0.34) benign(0.06) TCGA-53-A4EZ-01 9 125329928 125329928 C A OR1L8 Missense_Mutation p.V277F 0.13 tolerated(0.13) benign(0.078) TCGA-53-A4EZ-01 9 125652517 125652517 T A RC3H2 Intron 0.39 TCGA-53-A4EZ-01 9 125751589 125751589 C T RABGAP1 Nonsense_Mutation p.Q202* 0.32 TCGA-53-A4EZ-01 9 131495703 131495703 A T ZER1 Splice_Site p.X748_splice 0.33 TCGA-53-A4EZ-01 9 131765218 131765218 G A NUP188 Silent p.L1420L 0.35 TCGA-53-A4EZ-01 9 132620750 132620750 A G USP20 Missense_Mutation p.K68R 0.19 tolerated(0.36) benign(0.016) TCGA-53-A4EZ-01 9 132863452 132863452 A T GPR107 Missense_Mutation p.I361F 0.31 deleterious(0) benign(0.241) TCGA-53-A4EZ-01 9 133376431 133376431 G T ASS1 3'UTR 0.15 TCGA-53-A4EZ-01 9 135945962 135945962 C T CEL Silent p.F470F 0.16 TCGA-53-A4EZ-01 9 135985753 135985753 C G RALGDS Missense_Mutation p.V140L 0.15 deleterious(0) probably_damaging(0.965) TCGA-53-A4EZ-01 9 137644492 137644492 G A COL5A1 Splice_Site p.X573_splice 0.19 TCGA-53-A4EZ-01 9 138588610 138588611 - G SOHLH1 Frame_Shift_Ins p.L170Pfs*35 0.29 TCGA-53-A4EZ-01 9 21481720 21481720 C G IFNE 5'UTR 0.45 TCGA-53-A4EZ-01 9 21971056 21971056 C A CDKN2A Missense_Mutation p.G101V 0.52 deleterious(0) probably_damaging(0.992) TCGA-53-A4EZ-01 9 32630142 32630142 C T TAF1L Missense_Mutation p.M1812I 0.46 tolerated_low_confidence(0.42) benign(0.002) TCGA-53-A4EZ-01 9 32630210 32630210 G A TAF1L Nonsense_Mutation p.Q1790* 0.43 TCGA-53-A4EZ-01 9 33465806 33465806 C T NOL6 Silent p.L818L 0.31 TCGA-53-A4EZ-01 9 5557753 5557753 G A PDCD1LG2 Splice_Site p.X256_splice 0.33 TCGA-53-A4EZ-01 9 84248427 84248427 C T TLE1 Intron 0.42 TCGA-53-A4EZ-01 9 84530969 84530969 C T SPATA31D5P RNA 0.36 TCGA-53-A4EZ-01 9 84533311 84533311 T C SPATA31D5P RNA 0.14 TCGA-53-A4EZ-01 9 84562508 84562508 C A RP11-383M4.6 Intron 0.24 TCGA-53-A4EZ-01 9 87635144 87635144 C A NTRK2 Silent p.P732P 0.15 TCGA-53-A4EZ-01 9 87636221 87636221 C A NTRK2 Missense_Mutation p.Q796K 0.24 tolerated(1) benign(0.003) TCGA-53-A4EZ-01 X 102529223 102529223 G T TCEAL5 Missense_Mutation p.P90Q 0.59 tolerated(0.07) possibly_damaging(0.877) TCGA-53-A4EZ-01 X 107978161 107978161 C A IRS4 Missense_Mutation p.G472C 0.61 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-53-A4EZ-01 X 122532556 122532556 C A GRIA3 Silent p.R328R 0.60 TCGA-53-A4EZ-01 X 130407893 130407893 T G IGSF1 Silent p.T1301T 0.55 TCGA-53-A4EZ-01 X 135405430 135405430 G C GPR112 Missense_Mutation p.W188C 0.59 deleterious(0.02) probably_damaging(1) TCGA-53-A4EZ-01 X 144906315 144906315 G T SLITRK2 Missense_Mutation p.R791L 0.60 deleterious(0.05) benign(0.229) TCGA-53-A4EZ-01 X 151900504 151900504 A T MAGEA12 Silent p.P99P 0.62 TCGA-53-A4EZ-01 X 48339589 48339589 G T FTSJ1 Missense_Mutation p.A138S 0.55 tolerated(0.24) benign(0.34) TCGA-53-A4EZ-01 X 49072004 49072004 C A CACNA1F Splice_Site p.X1090_splice 0.50 TCGA-53-A4EZ-01 X 70145486 70145486 C A SLC7A3 3'UTR 0.77 TCGA-53-A4EZ-01 X 91456418 91456418 T A PCDH11X Silent p.S1026S 0.53 TCGA-53-A4EZ-01 Y 9195536 9195536 T A TSPY8 Missense_Mutation p.L29M 0.56 tolerated(0.23) possibly_damaging(0.461) TCGA-55-1592-01 10 101473134 101473134 T C COX15 3'Flank 0.13 TCGA-55-1592-01 10 105194078 105194078 C G PDCD11 Missense_Mutation p.S1213C 0.04 tolerated(0.12) benign(0.005) TCGA-55-1592-01 10 105218247 105218247 G T CALHM1 Missense_Mutation p.R88S 0.21 tolerated(0.09) benign(0.148) TCGA-55-1592-01 10 105903388 105903388 T G WDR96 Missense_Mutation p.K1318N 0.23 deleterious(0.03) possibly_damaging(0.733) TCGA-55-1592-01 10 114428028 114428028 T A VTI1A Missense_Mutation p.I160K 0.18 deleterious(0) probably_damaging(0.99) TCGA-55-1592-01 10 114925681 114925681 G T TCF7L2 Missense_Mutation p.A587S 0.21 tolerated_low_confidence(0.2) benign(0.047) TCGA-55-1592-01 10 117040877 117040877 T A ATRNL1 Missense_Mutation p.Y705N 0.33 deleterious(0.01) benign(0.002) TCGA-55-1592-01 10 118203902 118203902 A G PNLIPRP3 Silent p.L111L 0.21 TCGA-55-1592-01 10 11911910 11911910 G T PROSER2 Silent p.L271L 0.80 TCGA-55-1592-01 10 12209745 12209745 G T NUDT5 Missense_Mutation p.H206N 0.47 tolerated(0.07) possibly_damaging(0.871) TCGA-55-1592-01 10 124457832 124457832 A T C10orf120 Missense_Mutation p.I142K 0.05 deleterious(0) possibly_damaging(0.62) TCGA-55-1592-01 10 129907466 129907466 C A MKI67 Nonsense_Mutation p.E880* 0.25 TCGA-55-1592-01 10 134059451 134059451 C A STK32C Missense_Mutation p.D91Y 0.26 tolerated(0.21) benign(0.269) TCGA-55-1592-01 10 134459432 134459432 A C INPP5A Missense_Mutation p.N60H 0.09 deleterious(0) probably_damaging(0.973) TCGA-55-1592-01 10 17636321 17636321 C T PTPLA Missense_Mutation p.A223T 0.05 deleterious(0.04) possibly_damaging(0.902) TCGA-55-1592-01 10 23270366 23270366 A T ARMC3 Missense_Mutation p.Q338H 0.05 deleterious(0.01) benign(0.208) TCGA-55-1592-01 10 23292330 23292330 A G ARMC3 Missense_Mutation p.Y573C 0.52 deleterious(0) probably_damaging(0.966) TCGA-55-1592-01 10 28260243 28260243 C A ARMC4 Splice_Site p.X313_splice 0.10 TCGA-55-1592-01 10 31810791 31810791 A G ZEB1 Missense_Mutation p.Y844C 0.53 deleterious(0) probably_damaging(0.998) TCGA-55-1592-01 10 35327986 35327986 C A CUL2 Nonsense_Mutation p.E266* 0.10 TCGA-55-1592-01 10 52005145 52005145 C A ASAH2 Missense_Mutation p.R66L 0.34 tolerated_low_confidence(0.32) benign(0) TCGA-55-1592-01 10 55591271 55591271 C A PCDH15 Missense_Mutation p.D1336Y 0.30 deleterious(0) probably_damaging(0.99) TCGA-55-1592-01 10 61874084 61874084 T C ANK3 Silent p.L949L 0.14 TCGA-55-1592-01 10 69716678 69716678 G T HERC4 Missense_Mutation p.A669E 0.06 deleterious(0) possibly_damaging(0.901) TCGA-55-1592-01 10 71075716 71075716 C T HK1 Intron 0.15 TCGA-55-1592-01 10 7325987 7325987 G A SFMBT2 Silent p.R217R 0.06 TCGA-55-1592-01 10 75289573 75289573 C G USP54 Missense_Mutation p.R642P 0.26 tolerated(0.11) benign(0.067) TCGA-55-1592-01 10 78708951 78708951 G C KCNMA1 Silent p.L869L 0.05 TCGA-55-1592-01 10 8056639 8056639 G C TAF3 Missense_Mutation p.M905I 0.26 tolerated(0.14) benign(0) TCGA-55-1592-01 10 85968522 85968522 C T CDHR1 Missense_Mutation p.P402L 0.12 tolerated(0.13) benign(0.033) TCGA-55-1592-01 10 90572926 90572926 A T LIPM Missense_Mutation p.N113I 0.23 deleterious(0) possibly_damaging(0.875) TCGA-55-1592-01 10 95263113 95263113 G C CEP55 Missense_Mutation p.E143Q 0.16 deleterious(0.01) possibly_damaging(0.688) TCGA-55-1592-01 10 97779094 97779094 T C CC2D2B Silent p.N219N 0.13 TCGA-55-1592-01 11 107207336 107207336 T G CWF19L2 Missense_Mutation p.E769A 0.28 deleterious(0) probably_damaging(0.998) TCGA-55-1592-01 11 108040747 108040747 G C NPAT Missense_Mutation p.P937A 0.48 deleterious(0.05) probably_damaging(0.955) TCGA-55-1592-01 11 110035851 110035851 C T ZC3H12C Missense_Mutation p.H681Y 0.12 deleterious(0.02) probably_damaging(0.995) TCGA-55-1592-01 11 114453150 114453150 G C NXPE4 Missense_Mutation p.C230W 0.10 deleterious(0.03) probably_damaging(1) TCGA-55-1592-01 11 117308768 117308768 G T DSCAML1 Missense_Mutation p.S1485R 0.56 deleterious(0) probably_damaging(0.952) TCGA-55-1592-01 11 117870171 117870171 C A IL10RA Missense_Mutation p.Q518K 0.45 tolerated(0.3) benign(0.231) TCGA-55-1592-01 11 118851198 118851198 A G FOXR1 Splice_Site p.X204_splice 0.42 TCGA-55-1592-01 11 118971090 118971090 C A DPAGT1 Silent p.L175L 0.23 TCGA-55-1592-01 11 120175882 120175882 G A POU2F3 Silent p.K198K 0.11 TCGA-55-1592-01 11 1215494 1215494 G T MUC5AC RNA 0.24 TCGA-55-1592-01 11 122930824 122930824 C T HSPA8 Silent p.K188K 0.08 TCGA-55-1592-01 11 123887150 123887150 G A OR10G4 Missense_Mutation p.R290K 0.43 deleterious(0) probably_damaging(0.997) TCGA-55-1592-01 11 125325834 125325834 T A FEZ1 Missense_Mutation p.N279I 0.03 deleterious(0) possibly_damaging(0.9) TCGA-55-1592-01 11 128710054 128710054 T A KCNJ1 Missense_Mutation p.R48W 0.03 deleterious(0) probably_damaging(0.999) TCGA-55-1592-01 11 130058061 130058061 A G ST14 Missense_Mutation p.K45R 0.45 tolerated(0.12) benign(0.049) TCGA-55-1592-01 11 134240907 134240907 C G GLB1L2 Missense_Mutation p.I407M 0.16 deleterious(0.01) benign(0.364) TCGA-55-1592-01 11 18253001 18253001 G T SAA4 3'UTR 0.13 TCGA-55-1592-01 11 30255202 30255202 C A FSHB Missense_Mutation p.P82H 0.18 deleterious(0.04) probably_damaging(1) TCGA-55-1592-01 11 30352440 30352440 A G ARL14EP 5'UTR 0.10 TCGA-55-1592-01 11 31312213 31312213 C A DCDC1 Missense_Mutation p.G314V 0.28 deleterious(0.02) possibly_damaging(0.897) TCGA-55-1592-01 11 31312214 31312214 C A DCDC1 Nonsense_Mutation p.G314* 0.28 TCGA-55-1592-01 11 32413610 32413610 C A WT1 Missense_Mutation p.G447V 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-1592-01 11 33090376 33090376 G T TCP11L1 Missense_Mutation p.S433I 0.14 deleterious(0.03) possibly_damaging(0.857) TCGA-55-1592-01 11 33628193 33628193 C T KIAA1549L Missense_Mutation p.A1332V 0.08 tolerated(0.45) benign(0.016) TCGA-55-1592-01 11 35333830 35333830 T C SLC1A2 Missense_Mutation p.N159S 0.10 tolerated(0.75) benign(0.101) TCGA-55-1592-01 11 44097136 44097136 G C ACCS Missense_Mutation p.A184P 0.09 tolerated(1) benign(0.001) TCGA-55-1592-01 11 4674113 4674113 G T OR51E1 Silent p.L119L 0.19 TCGA-55-1592-01 11 47314115 47314115 A C MADD Missense_Mutation p.E1128A 0.14 tolerated(0.14) possibly_damaging(0.665) TCGA-55-1592-01 11 48346726 48346726 C T OR4C3 Silent p.P78P 0.06 TCGA-55-1592-01 11 5255426 5255426 G T HBD Missense_Mutation p.P37H 0.26 deleterious(0) possibly_damaging(0.876) TCGA-55-1592-01 11 55136184 55136184 C A OR4A15 Silent p.V275V 0.33 TCGA-55-1592-01 11 55927514 55927514 A T OR8K5 Missense_Mutation p.Y94N 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.646) TCGA-55-1592-01 11 56380147 56380147 A T OR5M1 Missense_Mutation p.Y278N 0.36 deleterious(0) probably_damaging(0.984) TCGA-55-1592-01 11 58891882 58891882 C A FAM111B Missense_Mutation p.S104R 0.28 deleterious(0.02) benign(0.081) TCGA-55-1592-01 11 59190132 59190132 C G OR5A2 Missense_Mutation p.A99P 0.35 deleterious(0.01) probably_damaging(0.982) TCGA-55-1592-01 11 60150636 60150636 A G MS4A7 Missense_Mutation p.M8V 0.34 tolerated(0.06) benign(0.004) TCGA-55-1592-01 11 60198329 60198329 T A MS4A5 Missense_Mutation p.L72M 0.25 tolerated(0.07) benign(0.396) TCGA-55-1592-01 11 6024118 6024118 G T OR56A4 Missense_Mutation p.S87R 0.27 deleterious(0.05) possibly_damaging(0.8) TCGA-55-1592-01 11 61077340 61077340 C T DDB1 Missense_Mutation p.G832S 0.17 deleterious(0.03) possibly_damaging(0.907) TCGA-55-1592-01 11 6190952 6190952 A G OR52B2 Missense_Mutation p.F202S 0.17 deleterious(0) probably_damaging(0.992) TCGA-55-1592-01 11 62292744 62292744 C T AHNAK Missense_Mutation p.A3049T 0.03 possibly_damaging(0.492) TCGA-55-1592-01 11 6661983 6661983 C A DCHS1 Missense_Mutation p.G288W 0.26 deleterious(0) probably_damaging(1) TCGA-55-1592-01 11 6704014 6704014 G C MRPL17 Missense_Mutation p.N69K 0.31 deleterious(0.04) probably_damaging(0.928) TCGA-55-1592-01 11 6816486 6816486 C A OR6A2 Missense_Mutation p.G152C 0.28 tolerated(0.13) probably_damaging(0.971) TCGA-55-1592-01 11 71293630 71293630 G A KRTAP5-11 Missense_Mutation p.S85F 0.25 deleterious_low_confidence(0) unknown(0) TCGA-55-1592-01 11 73825446 73825446 C T C2CD3 Silent p.V571V 0.10 TCGA-55-1592-01 11 78204159 78204159 T C NARS2 Missense_Mutation p.M258V 0.40 deleterious(0) possibly_damaging(0.795) TCGA-55-1592-01 11 7961052 7961052 G A OR10A3 Nonsense_Mutation p.Q6* 0.35 TCGA-55-1592-01 11 83173087 83173087 G C DLG2 Missense_Mutation p.R927G 0.15 deleterious(0.01) probably_damaging(0.988) TCGA-55-1592-01 11 93118676 93118676 G C CCDC67 Missense_Mutation p.G301A 0.24 tolerated(0.55) probably_damaging(1) TCGA-55-1592-01 11 94322291 94322291 A G PIWIL4 Missense_Mutation p.N307D 0.19 deleterious(0) possibly_damaging(0.818) TCGA-55-1592-01 11 99690425 99690425 G - CNTN5 Frame_Shift_Del p.W69Cfs*2 0.08 TCGA-55-1592-01 12 101576622 101576622 G A SLC5A8 Missense_Mutation p.S375L 0.19 tolerated(0.09) benign(0.032) TCGA-55-1592-01 12 102122825 102122825 A - CHPT1 3'UTR 0.26 TCGA-55-1592-01 12 10280406 10280406 C T CLEC7A Missense_Mutation p.V48I 0.50 deleterious(0) possibly_damaging(0.694) TCGA-55-1592-01 12 104098343 104098343 G A STAB2 Missense_Mutation p.C1284Y 0.31 deleterious(0) probably_damaging(0.998) TCGA-55-1592-01 12 105538144 105538144 G T KIAA1033 Missense_Mutation p.R697L 0.23 deleterious(0.01) probably_damaging(0.953) TCGA-55-1592-01 12 108686656 108686656 C T CMKLR1 Silent p.L28L 0.38 TCGA-55-1592-01 12 109647064 109647064 G A ACACB Missense_Mutation p.R1052H 0.14 deleterious(0) probably_damaging(0.997) TCGA-55-1592-01 12 111099066 111099066 G A HVCN1 Missense_Mutation p.A70V 0.18 tolerated(0.44) benign(0.007) TCGA-55-1592-01 12 125435313 125435313 C A DHX37 Missense_Mutation p.S969I 0.56 deleterious(0) probably_damaging(0.913) TCGA-55-1592-01 12 133331681 133331681 G C ANKLE2 Missense_Mutation p.L74V 0.19 tolerated(0.28) probably_damaging(0.987) TCGA-55-1592-01 12 21349976 21349976 C A SLCO1B1 Missense_Mutation p.P275Q 0.05 deleterious(0) probably_damaging(1) TCGA-55-1592-01 12 21350017 21350017 G A SLCO1B1 Missense_Mutation p.E289K 0.04 tolerated(0.2) benign(0.119) TCGA-55-1592-01 12 27067485 27067485 G C ASUN Missense_Mutation p.N425K 0.03 tolerated(0.07) benign(0.098) TCGA-55-1592-01 12 29486613 29486613 C T FAR2 Silent p.A478A 0.18 TCGA-55-1592-01 12 31944658 31944658 A C H3F3C 3'UTR 0.27 TCGA-55-1592-01 12 39701384 39701384 C G KIF21A Missense_Mutation p.R1475S 0.07 deleterious(0) probably_damaging(0.999) TCGA-55-1592-01 12 39716581 39716581 G A KIF21A Missense_Mutation p.T1187I 0.14 tolerated(0.36) benign(0.001) TCGA-55-1592-01 12 43856734 43856734 C T ADAMTS20 Silent p.V526V 0.19 TCGA-55-1592-01 12 45410296 45410296 G T DBX2 Missense_Mutation p.L265I 0.28 tolerated(0.09) benign(0.055) TCGA-55-1592-01 12 47471976 47471976 A G AMIGO2 Silent p.R270R 0.06 TCGA-55-1592-01 12 48358151 48358151 C T TMEM106C Silent p.T44T 0.31 TCGA-55-1592-01 12 48376677 48376677 T C COL2A1 Missense_Mutation p.Q716R 0.41 probably_damaging(0.943) TCGA-55-1592-01 12 4920328 4920328 G - KCNA6 Frame_Shift_Del p.E375Sfs*46 0.18 TCGA-55-1592-01 12 49362003 49362003 C A WNT10B Missense_Mutation p.C146F 0.29 deleterious(0) probably_damaging(0.996) TCGA-55-1592-01 12 49719372 49719372 G T TROAP Silent p.G142G 0.18 TCGA-55-1592-01 12 54925558 54925558 C G NCKAP1L Missense_Mutation p.I910M 0.26 deleterious(0) probably_damaging(0.996) TCGA-55-1592-01 12 56347975 56347975 A G PMEL 3'UTR 0.11 TCGA-55-1592-01 12 69140237 69140237 G T SLC35E3 Missense_Mutation p.C27F 0.32 tolerated(0.09) benign(0.017) TCGA-55-1592-01 12 75444633 75444633 C A KCNC2 Silent p.L384L 0.20 TCGA-55-1592-01 12 76786490 76786490 G A OSBPL8 Missense_Mutation p.S267F 0.17 deleterious(0) probably_damaging(0.935) TCGA-55-1592-01 12 86373677 86373677 A G MGAT4C Missense_Mutation p.L276S 0.32 deleterious(0) probably_damaging(1) TCGA-55-1592-01 12 9344799 9344799 C A PZP Missense_Mutation p.E512D 0.32 tolerated(0.24) benign(0.057) TCGA-55-1592-01 12 970256 970256 G C WNK1 Missense_Mutation p.K566N 0.19 deleterious(0.05) unknown(0) TCGA-55-1592-01 13 103703714 103703714 G T SLC10A2 Missense_Mutation p.S218R 0.49 deleterious(0.01) benign(0.03) TCGA-55-1592-01 13 32776615 32776615 A T FRY Silent p.S1323S 0.57 TCGA-55-1592-01 13 36700141 36700141 C A DCLK1 Missense_Mutation p.R45L 0.55 deleterious(0.04) unknown(0) TCGA-55-1592-01 13 36909952 36909952 G C SPG20 Missense_Mutation p.Q6E 0.46 tolerated(0.96) benign(0.001) TCGA-55-1592-01 13 38266459 38266459 G T TRPC4 Missense_Mutation p.P304H 0.56 deleterious(0) probably_damaging(0.994) TCGA-55-1592-01 13 42876762 42876762 G C AKAP11 Missense_Mutation p.G1294R 0.08 tolerated(0.15) benign(0.069) TCGA-55-1592-01 13 67799482 67799482 G C PCDH9 Intron 0.58 TCGA-55-1592-01 13 78492316 78492316 G C EDNRB Missense_Mutation p.C221W 0.54 deleterious(0) probably_damaging(0.981) TCGA-55-1592-01 14 101533098 101533098 T A MIR656 RNA 0.21 TCGA-55-1592-01 14 103412024 103412024 G C CDC42BPB Silent p.L1262L 0.14 TCGA-55-1592-01 14 104251168 104251168 G A PPP1R13B Nonsense_Mutation p.R81* 0.21 TCGA-55-1592-01 14 107170193 107170193 A T IGHV1-69 Missense_Mutation p.V30E 0.33 deleterious(0) possibly_damaging(0.903) TCGA-55-1592-01 14 20345048 20345048 T A OR4K2 Missense_Mutation p.L208M 0.18 tolerated(0.39) probably_damaging(0.976) TCGA-55-1592-01 14 20859894 20859894 C G TEP1 Missense_Mutation p.R654T 0.18 deleterious(0) possibly_damaging(0.872) TCGA-55-1592-01 14 22631522 22631522 C A TRAV29DV5 Missense_Mutation p.S38R 0.20 tolerated(0.19) benign(0.049) TCGA-55-1592-01 14 23445718 23445718 A T AJUBA Missense_Mutation p.F396I 0.14 deleterious(0) possibly_damaging(0.587) TCGA-55-1592-01 14 23851669 23851669 G T MYH6 Missense_Mutation p.L1922I 0.19 deleterious(0.01) benign(0.053) TCGA-55-1592-01 14 35243536 35243536 G C BAZ1A Missense_Mutation p.I998M 0.05 deleterious(0) probably_damaging(0.924) TCGA-55-1592-01 14 45571881 45571881 A G PRPF39 Missense_Mutation p.Y240C 0.29 deleterious(0) probably_damaging(0.991) TCGA-55-1592-01 14 45603642 45603642 T A FKBP3 Silent p.P6P 0.43 TCGA-55-1592-01 14 57268677 57268677 C T OTX2 Missense_Mutation p.G224R 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-55-1592-01 14 58031051 58031051 G T SLC35F4 Silent p.R456R 0.22 TCGA-55-1592-01 14 63888812 63888812 C G PPP2R5E Missense_Mutation p.V119L 0.08 deleterious(0.04) benign(0.026) TCGA-55-1592-01 14 71197442 71197442 C A MAP3K9 Missense_Mutation p.E1004D 0.37 tolerated(0.31) benign(0.021) TCGA-55-1592-01 14 73743882 73743882 G A NUMB Nonsense_Mutation p.Q454* 0.23 TCGA-55-1592-01 14 73959323 73959323 A T HEATR4 Intron 0.18 TCGA-55-1592-01 14 74825598 74825598 G A VRTN 3'UTR 0.25 TCGA-55-1592-01 14 74975375 74975375 C T LTBP2 Missense_Mutation p.S1195N 0.21 deleterious(0) probably_damaging(0.917) TCGA-55-1592-01 14 79434538 79434538 G T NRXN3 Silent p.L624L 0.40 TCGA-55-1592-01 14 80328143 80328143 T C NRXN3 Missense_Mutation p.Y1008H 0.24 deleterious(0) benign(0.001) TCGA-55-1592-01 14 89016693 89016693 C A PTPN21 Silent p.L23L 0.25 TCGA-55-1592-01 14 96777950 96777950 C A ATG2B Missense_Mutation p.V1307F 0.21 deleterious(0) possibly_damaging(0.549) TCGA-55-1592-01 15 100332548 100332548 G A AC090825.1 RNA 0.23 TCGA-55-1592-01 15 20636350 20636350 A C HERC2P3 RNA 0.26 TCGA-55-1592-01 15 23000107 23000107 G C CYFIP1 Missense_Mutation p.G1154A 0.22 deleterious(0) probably_damaging(0.936) TCGA-55-1592-01 15 23692374 23692374 C A GOLGA6L2 5'UTR 0.45 TCGA-55-1592-01 15 24921525 24921525 G C NPAP1 Missense_Mutation p.G171R 0.16 tolerated(0.08) possibly_damaging(0.907) TCGA-55-1592-01 15 25326358 25326358 G T SNORD116-12 3'Flank 0.49 TCGA-55-1592-01 15 25440127 25440127 C A SNORD115-14 RNA 0.24 TCGA-55-1592-01 15 25449376 25449376 G T SNORD115-20 5'Flank 0.30 TCGA-55-1592-01 15 25468213 25468213 G T SNORD115-27 3'Flank 0.30 TCGA-55-1592-01 15 25475908 25475908 G - SNORD115-33 5'Flank 0.13 TCGA-55-1592-01 15 26806314 26806314 G T GABRB3 Missense_Mutation p.T282N 0.22 deleterious(0) probably_damaging(0.984) TCGA-55-1592-01 15 28116363 28116363 C G OCA2 Silent p.L727L 0.06 TCGA-55-1592-01 15 31862303 31862303 A G OTUD7A Silent p.G83G 0.12 TCGA-55-1592-01 15 32928496 32928496 A G ARHGAP11A Missense_Mutation p.T508A 0.15 deleterious(0.03) probably_damaging(0.947) TCGA-55-1592-01 15 33955875 33955875 G A RYR3 Silent p.L1852L 0.12 TCGA-55-1592-01 15 42434278 42434278 G A PLA2G4F Silent p.L818L 0.13 TCGA-55-1592-01 15 43258422 43258422 G A UBR1 Missense_Mutation p.P1507L 0.06 deleterious(0) possibly_damaging(0.714) TCGA-55-1592-01 15 54305855 54305855 G T UNC13C Missense_Mutation p.G252V 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-1592-01 15 54306827 54306827 G T UNC13C Missense_Mutation p.S576I 0.20 deleterious_low_confidence(0) possibly_damaging(0.736) TCGA-55-1592-01 15 54307661 54307661 C A UNC13C Missense_Mutation p.T854K 0.33 tolerated_low_confidence(0.06) benign(0.198) TCGA-55-1592-01 15 57525012 57525012 G A TCF12 Missense_Mutation p.A310T 0.36 tolerated(0.28) benign(0.009) TCGA-55-1592-01 15 58458996 58458996 C T AQP9 Missense_Mutation p.S79F 0.08 deleterious(0) probably_damaging(0.999) TCGA-55-1592-01 15 58830684 58830684 C A LIPC Missense_Mutation p.L81M 0.22 tolerated(0.22) probably_damaging(0.928) TCGA-55-1592-01 15 64380925 64380925 T A FAM96A Missense_Mutation p.T84S 0.24 tolerated(0.1) benign(0.04) TCGA-55-1592-01 15 65157686 65157686 G T PLEKHO2 Missense_Mutation p.A358S 0.29 tolerated(0.38) benign(0.101) TCGA-55-1592-01 15 73528761 73528761 C G NEO1 Missense_Mutation p.I455M 0.22 deleterious(0) possibly_damaging(0.891) TCGA-55-1592-01 15 75014042 75014042 A T CYP1A1 Missense_Mutation p.I281N 0.17 deleterious(0) probably_damaging(0.996) TCGA-55-1592-01 15 81428997 81428997 G A C15orf26 Silent p.Q100Q 0.19 TCGA-55-1592-01 15 81591951 81591951 G A IL16 Missense_Mutation p.D762N 0.16 deleterious(0) benign(0.012) TCGA-55-1592-01 15 82533698 82533698 C A EFTUD1 Silent p.V97V 0.18 TCGA-55-1592-01 15 84611402 84611402 G T ADAMTSL3 Missense_Mutation p.Q724H 0.21 deleterious(0) probably_damaging(0.999) TCGA-55-1592-01 15 84683293 84683293 G T ADAMTSL3 Splice_Site p.X1325_splice 0.18 TCGA-55-1592-01 15 84683294 84683294 G T ADAMTSL3 Missense_Mutation p.G1325V 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-55-1592-01 15 88678465 88678465 C A NTRK3 Missense_Mutation p.E357D 0.15 tolerated(0.63) benign(0.009) TCGA-55-1592-01 15 89424754 89424754 G C HAPLN3 Missense_Mutation p.H109Q 0.20 tolerated(0.26) benign(0.081) TCGA-55-1592-01 15 90226986 90226986 C G PEX11A Missense_Mutation p.R122S 0.10 tolerated(0.27) possibly_damaging(0.613) TCGA-55-1592-01 16 1129358 1129358 T A SSTR5 Missense_Mutation p.W164R 0.37 deleterious(0) probably_damaging(1) TCGA-55-1592-01 16 15917231 15917231 T C MYH11 Missense_Mutation p.Y128C 0.32 probably_damaging(0.999) TCGA-55-1592-01 16 20410590 20410590 C T PDILT Silent p.V11V 0.18 TCGA-55-1592-01 16 20636757 20636757 C A ACSM1 Silent p.P505P 0.33 TCGA-55-1592-01 16 21739597 21739597 C T OTOA Silent p.I684I 0.30 TCGA-55-1592-01 16 27456538 27456538 C G IL21R Silent p.L242L 0.27 TCGA-55-1592-01 16 30721220 30721220 C T SRCAP Missense_Mutation p.T302M 0.09 unknown(0) TCGA-55-1592-01 16 58580244 58580244 G C CNOT1 Silent p.L1329L 0.15 TCGA-55-1592-01 16 64981591 64981591 T C CDH11 Missense_Mutation p.Y769C 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-55-1592-01 16 66426327 66426327 G A CDH5 Intron 0.34 TCGA-55-1592-01 16 66989 66989 A C WASH4P Missense_Mutation p.L216R 0.18 tolerated(0.14) possibly_damaging(0.905) TCGA-55-1592-01 16 67178769 67178769 C T C16orf70 Missense_Mutation p.A332V 0.35 tolerated(0.31) benign(0.003) TCGA-55-1592-01 16 67441686 67441686 C A ZDHHC1 5'UTR 0.42 TCGA-55-1592-01 16 68026508 68026508 C A DPEP2 Missense_Mutation p.V99F 0.24 tolerated(1) benign(0.002) TCGA-55-1592-01 16 68225604 68225604 G A NFATC3 Missense_Mutation p.S1011N 0.40 tolerated_low_confidence(1) benign(0.001) TCGA-55-1592-01 16 71955338 71955338 A T IST1 Missense_Mutation p.E191D 0.12 tolerated(0.05) benign(0.028) TCGA-55-1592-01 16 819450 819450 A C MSLNL Missense_Mutation p.L1047R 0.15 possibly_damaging(0.453) TCGA-55-1592-01 16 88653008 88653008 G T ZC3H18 Missense_Mutation p.D202Y 0.22 deleterious_low_confidence(0) unknown(0) TCGA-55-1592-01 17 10369629 10369629 C T MYH4 Silent p.L103L 0.40 TCGA-55-1592-01 17 21318672 21318672 G T KCNJ12 Silent p.R6R 0.08 TCGA-55-1592-01 17 29657349 29657349 G A NF1 Missense_Mutation p.C1882Y 0.38 tolerated(0.52) probably_damaging(0.982) TCGA-55-1592-01 17 30349570 30349570 A G LRRC37B Missense_Mutation p.K469E 0.31 tolerated(0.57) benign(0.003) TCGA-55-1592-01 17 37565297 37565297 G C MED1 Silent p.P1059P 0.62 TCGA-55-1592-01 17 38031516 38031516 C T ZPBP2 Nonsense_Mutation p.R240* 0.08 TCGA-55-1592-01 17 38031554 38031554 C T ZPBP2 Silent p.F252F 0.10 TCGA-55-1592-01 17 38545891 38545891 C T TOP2A Silent p.K1492K 0.07 TCGA-55-1592-01 17 38546301 38546301 C T TOP2A Silent p.K1461K 0.07 TCGA-55-1592-01 17 40818442 40818442 C T TUBG2 Silent p.Y366Y 0.10 TCGA-55-1592-01 17 40996773 40996773 G A AOC2 Missense_Mutation p.A44T 0.12 tolerated(0.15) benign(0.001) TCGA-55-1592-01 17 42018943 42018943 G A PPY Missense_Mutation p.A27V 0.17 deleterious(0.04) unknown(0) TCGA-55-1592-01 17 42286812 42286812 G A UBTF Nonsense_Mutation p.Q605* 0.23 TCGA-55-1592-01 17 43215142 43215142 G A ACBD4 Missense_Mutation p.G186R 0.26 tolerated_low_confidence(0.12) probably_damaging(0.991) TCGA-55-1592-01 17 44782158 44782158 G A NSF Missense_Mutation p.A470T 0.11 deleterious(0.03) benign(0.009) TCGA-55-1592-01 17 45681260 45681260 A G NPEPPS Intron 0.27 TCGA-55-1592-01 17 46607116 46607116 C A HOXB1 Missense_Mutation p.R233S 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-1592-01 17 48072147 48072147 A T DLX3 Missense_Mutation p.N72K 0.30 deleterious(0.01) probably_damaging(0.913) TCGA-55-1592-01 17 54403587 54403587 G A ANKFN1 Missense_Mutation p.G23E 0.43 deleterious_low_confidence(0.02) benign(0.29) TCGA-55-1592-01 17 58134604 58134604 C T HEATR6 Silent p.K628K 0.14 TCGA-55-1592-01 17 60690040 60690040 G T TLK2 3'UTR 0.28 TCGA-55-1592-01 17 61555354 61555354 G T ACE Silent p.L104L 0.35 TCGA-55-1592-01 17 61972659 61972659 C T CSH1 Intron 0.33 TCGA-55-1592-01 17 61995377 61995377 G T GH1 Silent p.S97S 0.45 TCGA-55-1592-01 17 64800011 64800011 C A PRKCA Missense_Mutation p.N625K 0.20 deleterious(0) probably_damaging(0.999) TCGA-55-1592-01 17 6659244 6659244 T C XAF1 5'UTR 0.50 TCGA-55-1592-01 17 66891114 66891114 C A ABCA8 Missense_Mutation p.Q895H 0.21 deleterious(0) probably_damaging(0.998) TCGA-55-1592-01 17 67031811 67031811 C T ABCA9 Missense_Mutation p.G311D 0.24 deleterious(0) probably_damaging(1) TCGA-55-1592-01 17 71394318 71394318 G T SDK2 Silent p.R1070R 0.12 TCGA-55-1592-01 17 72540857 72540857 C T CD300C Silent p.L97L 0.28 TCGA-55-1592-01 17 72926822 72926822 G A OTOP2 Silent p.T364T 0.12 TCGA-55-1592-01 17 7577551 7577551 C A TP53 Missense_Mutation p.G244C 0.55 deleterious(0) probably_damaging(1) TCGA-55-1592-01 17 8784284 8784284 G A PIK3R5 Silent p.N811N 0.29 TCGA-55-1592-01 17 9532031 9532031 C G WDR16 Missense_Mutation p.I356M 0.05 deleterious(0) probably_damaging(0.985) TCGA-55-1592-01 18 13645351 13645351 A T LDLRAD4 Missense_Mutation p.R206W 0.23 deleterious(0) probably_damaging(0.998) TCGA-55-1592-01 18 19996562 19996562 C A CTAGE1 Missense_Mutation p.A405S 0.11 deleterious(0.05) possibly_damaging(0.897) TCGA-55-1592-01 18 29055815 29055815 T A DSG3 Missense_Mutation p.D864E 0.19 tolerated(0.24) benign(0.229) TCGA-55-1592-01 18 30554589 30554589 C A CCDC178 Silent p.V815V 0.25 TCGA-55-1592-01 18 3845280 3845280 C T DLGAP1 Intron 0.13 TCGA-55-1592-01 18 47799766 47799766 C A MBD1 Nonsense_Mutation p.E508* 0.27 TCGA-55-1592-01 18 48447064 48447064 C T ME2 Missense_Mutation p.A293V 0.23 deleterious(0.03) possibly_damaging(0.85) TCGA-55-1592-01 18 48703798 48703798 G A MEX3C Silent p.S301S 0.39 TCGA-55-1592-01 18 54446673 54446673 T C WDR7 Silent p.L987L 0.55 TCGA-55-1592-01 18 57026338 57026338 C G LMAN1 Missense_Mutation p.E47Q 0.29 deleterious(0.02) probably_damaging(1) TCGA-55-1592-01 18 5969418 5969418 G T L3MBTL4 Missense_Mutation p.Q539K 0.09 tolerated(1) benign(0) TCGA-55-1592-01 18 64239490 64239490 C A CDH19 5'UTR 0.33 TCGA-55-1592-01 18 76753743 76753743 A G SALL3 Silent p.P584P 0.77 TCGA-55-1592-01 19 12758269 12758269 G C MAN2B1 Silent p.T936T 0.04 TCGA-55-1592-01 19 1440170 1440170 G A RPS15 Missense_Mutation p.R81Q 0.12 deleterious(0.05) benign(0.173) TCGA-55-1592-01 19 14952191 14952191 G C OR7A10 Missense_Mutation p.P167A 0.39 deleterious_low_confidence(0.02) benign(0.003) TCGA-55-1592-01 19 14991871 14991871 G C OR7A17 Silent p.T99T 0.48 TCGA-55-1592-01 19 15052376 15052376 C T OR7C2 Missense_Mutation p.L26F 0.50 tolerated_low_confidence(0.21) benign(0.005) TCGA-55-1592-01 19 15586354 15586354 A G PGLYRP2 Missense_Mutation p.F376S 0.43 deleterious(0) probably_damaging(0.974) TCGA-55-1592-01 19 18254604 18254604 T G MAST3 Missense_Mutation p.C762G 0.10 tolerated(0.36) benign(0) TCGA-55-1592-01 19 2790467 2790467 A G THOP1 Missense_Mutation p.N22S 0.41 deleterious(0.02) benign(0.019) TCGA-55-1592-01 19 35941684 35941684 G T FFAR2 3'UTR 0.44 TCGA-55-1592-01 19 37903769 37903769 C A ZNF569 Missense_Mutation p.M597I 0.50 tolerated(0.05) benign(0.183) TCGA-55-1592-01 19 38089281 38089281 C G ZNF540 5'UTR 0.57 TCGA-55-1592-01 19 40367914 40367914 T C FCGBP Missense_Mutation p.E4349G 0.28 benign(0.039) TCGA-55-1592-01 19 41281318 41281318 G A MIA 5'UTR 0.25 TCGA-55-1592-01 19 41386491 41386491 C A CYP2A7 Missense_Mutation p.R129L 0.26 deleterious(0) benign(0.036) TCGA-55-1592-01 19 46376130 46376130 A T FOXA3 Silent p.P289P 0.62 TCGA-55-1592-01 19 48620931 48620931 G A LIG1 Silent p.L849L 0.29 TCGA-55-1592-01 19 49814442 49814442 G A SLC6A16 Missense_Mutation p.R55W 0.12 deleterious(0.01) possibly_damaging(0.88) TCGA-55-1592-01 19 50905742 50905742 A G POLD1 Missense_Mutation p.N264D 0.61 deleterious(0.01) possibly_damaging(0.88) TCGA-55-1592-01 19 54783844 54783844 G T LILRB2 Missense_Mutation p.L53I 0.53 deleterious(0.04) benign(0.274) TCGA-55-1592-01 19 55543670 55543670 C G GP6 Silent p.V54V 0.55 TCGA-55-1592-01 19 56490839 56490839 C A NLRP8 Missense_Mutation p.L986M 0.49 tolerated(0.11) probably_damaging(0.921) TCGA-55-1592-01 19 9203967 9203967 G T OR1M1 Missense_Mutation p.G16V 0.44 deleterious(0) probably_damaging(0.999) TCGA-55-1592-01 1 102271669 102271669 C A OLFM3 Missense_Mutation p.W221L 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-55-1592-01 1 110294756 110294756 T C EPS8L3 Missense_Mutation p.H433R 0.29 tolerated(0.22) benign(0.093) TCGA-55-1592-01 1 111146592 111146592 C T KCNA2 Silent p.G271G 0.19 TCGA-55-1592-01 1 111147346 111147346 T C KCNA2 Missense_Mutation p.Q20R 0.29 tolerated(0.27) benign(0.007) TCGA-55-1592-01 1 111494316 111494316 T C LRIF1 Missense_Mutation p.Q397R 0.15 tolerated(0.08) benign(0.005) TCGA-55-1592-01 1 112308806 112308806 A G DDX20 Missense_Mutation p.Y587C 0.33 tolerated(0.19) benign(0) TCGA-55-1592-01 1 11596438 11596438 G T PTCHD2 Missense_Mutation p.A1292S 0.35 tolerated(0.28) possibly_damaging(0.782) TCGA-55-1592-01 1 120165639 120165639 C T ZNF697 Missense_Mutation p.G443R 0.27 deleterious(0) probably_damaging(1) TCGA-55-1592-01 1 120839828 120839828 G A FAM72B 5'UTR 0.09 TCGA-55-1592-01 1 148022952 148022952 C A NBPF14 Missense_Mutation p.W186C 0.35 tolerated(0.08) benign(0.03) TCGA-55-1592-01 1 152595433 152595433 C G LCE3A Silent p.L49L 0.09 TCGA-55-1592-01 1 1563878 1563878 G A MIB2 Missense_Mutation p.D775N 0.18 tolerated(0.33) probably_damaging(0.967) TCGA-55-1592-01 1 156823768 156823768 G T INSRR Missense_Mutation p.A138D 0.38 deleterious(0) probably_damaging(0.991) TCGA-55-1592-01 1 157811523 157811523 T G CD5L 5'UTR 0.15 TCGA-55-1592-01 1 158368853 158368853 A C OR10T2 Missense_Mutation p.L135R 0.20 deleterious(0) possibly_damaging(0.613) TCGA-55-1592-01 1 158735615 158735615 G A OR6N1 Silent p.N286N 0.25 TCGA-55-1592-01 1 159890305 159890305 T A TAGLN2 5'UTR 0.24 TCGA-55-1592-01 1 159923368 159923368 G T SLAMF9 Missense_Mutation p.P41H 0.33 deleterious(0) probably_damaging(0.994) TCGA-55-1592-01 1 161692781 161692781 C A FCRLB Missense_Mutation p.P12T 0.35 deleterious(0) benign(0.1) TCGA-55-1592-01 1 163043250 163043250 G C RGS4 Silent p.G169G 0.20 TCGA-55-1592-01 1 163172591 163172591 C A RGS5 Missense_Mutation p.C12F 0.26 deleterious(0.02) benign(0.056) TCGA-55-1592-01 1 166973415 166973415 A G MAEL Splice_Site p.X175_splice 0.05 TCGA-55-1592-01 1 16727321 16727321 C T SPATA21 Silent p.R356R 0.28 TCGA-55-1592-01 1 167906269 167906269 A G MPC2 5'Flank 0.54 TCGA-55-1592-01 1 16810776 16810776 C T CROCCP3 RNA 0.23 TCGA-55-1592-01 1 168550295 168550295 T C XCL1 Missense_Mutation p.I61T 0.39 tolerated(0.06) benign(0.244) TCGA-55-1592-01 1 169761944 169761944 T C METTL18 Missense_Mutation p.N298S 0.18 deleterious(0) probably_damaging(0.974) TCGA-55-1592-01 1 175063368 175063368 G A TNN Missense_Mutation p.A523T 0.12 tolerated(0.1) possibly_damaging(0.721) TCGA-55-1592-01 1 175331897 175331897 G C TNR Missense_Mutation p.T919S 0.23 tolerated(0.22) benign(0.044) TCGA-55-1592-01 1 176564340 176564340 G T PAPPA2 Missense_Mutation p.D534Y 0.40 deleterious(0) probably_damaging(0.979) TCGA-55-1592-01 1 181548245 181548245 G T CACNA1E Missense_Mutation p.M218I 0.05 deleterious(0) benign(0.072) TCGA-55-1592-01 1 183189974 183189974 A T LAMC2 Missense_Mutation p.Y173F 0.38 tolerated(0.93) benign(0.261) TCGA-55-1592-01 1 183885633 183885633 C T RGL1 Missense_Mutation p.S636F 0.22 tolerated(0.05) probably_damaging(0.959) TCGA-55-1592-01 1 192547444 192547444 G A RGS1 Missense_Mutation p.E125K 0.24 tolerated(1) benign(0.001) TCGA-55-1592-01 1 192547445 192547445 A G RGS1 Missense_Mutation p.E125G 0.23 deleterious(0) benign(0.074) TCGA-55-1592-01 1 196971714 196971714 G T CFHR5 Missense_Mutation p.C417F 0.24 deleterious(0) probably_damaging(0.969) TCGA-55-1592-01 1 201827572 201827572 T C IPO9 Intron 0.25 TCGA-55-1592-01 1 20304613 20304613 A T PLA2G2A Missense_Mutation p.C63S 0.29 deleterious(0) probably_damaging(1) TCGA-55-1592-01 1 203452913 203452913 G T PRELP Missense_Mutation p.D201Y 0.09 tolerated(0.12) probably_damaging(1) TCGA-55-1592-01 1 205631992 205631992 C G SLC45A3 Silent p.P309P 0.22 TCGA-55-1592-01 1 207112588 207112588 C A PIGR Silent p.P88P 0.13 TCGA-55-1592-01 1 207867885 207867885 G A CR1L Nonsense_Mutation p.W217* 0.14 TCGA-55-1592-01 1 212799845 212799845 G - FAM71A Frame_Shift_Del p.G543Afs*8 0.41 TCGA-55-1592-01 1 213445953 213445953 G C RPS6KC1 Silent p.V1059V 0.06 TCGA-55-1592-01 1 216052133 216052133 G C USH2A Missense_Mutation p.P2844R 0.28 probably_damaging(0.996) TCGA-55-1592-01 1 216348530 216348530 G A USH2A Intron 0.38 TCGA-55-1592-01 1 223178410 223178410 C G DISP1 Missense_Mutation p.A1224G 0.26 tolerated_low_confidence(0.35) benign(0.06) TCGA-55-1592-01 1 226426782 226426782 G A LIN9 Missense_Mutation p.P395S 0.09 tolerated(0.26) benign(0.009) TCGA-55-1592-01 1 22837737 22837737 C A ZBTB40 Silent p.A633A 0.14 TCGA-55-1592-01 1 228509331 228509331 G T OBSCN Missense_Mutation p.R5887L 0.42 benign(0.264) TCGA-55-1592-01 1 230845985 230845985 C A AGT Silent p.L204L 0.30 TCGA-55-1592-01 1 236647671 236647671 C T EDARADD 3'Flank 0.09 TCGA-55-1592-01 1 236889278 236889278 C A ACTN2 Missense_Mutation p.T165N 0.04 deleterious(0.02) probably_damaging(1) TCGA-55-1592-01 1 237802406 237802406 G A RYR2 Silent p.G2340G 0.30 TCGA-55-1592-01 1 237948113 237948113 G T RYR2 Missense_Mutation p.K4367N 0.43 benign(0.016) TCGA-55-1592-01 1 237948114 237948114 G T RYR2 Nonsense_Mutation p.E4368* 0.44 TCGA-55-1592-01 1 238090281 238090281 G T RP11-193H5.1 RNA 0.30 TCGA-55-1592-01 1 240493928 240493928 T C FMN2 Missense_Mutation p.M1488T 0.36 benign(0.059) TCGA-55-1592-01 1 242048689 242048689 G T EXO1 Missense_Mutation p.R762I 0.42 deleterious(0) possibly_damaging(0.774) TCGA-55-1592-01 1 2440356 2440356 G C PANK4 Missense_Mutation p.A751G 0.42 tolerated(0.12) benign(0.134) TCGA-55-1592-01 1 245018903 245018903 C T HNRNPU Silent p.G725G 0.12 TCGA-55-1592-01 1 247751695 247751695 C G OR2G2 Missense_Mutation p.L12V 0.44 tolerated(0.52) benign(0.005) TCGA-55-1592-01 1 249107312 249107312 C A SH3BP5L Missense_Mutation p.R196L 0.41 deleterious(0.01) benign(0.392) TCGA-55-1592-01 1 26738039 26738039 C T LIN28A Missense_Mutation p.A65V 0.30 tolerated(0.09) benign(0.004) TCGA-55-1592-01 1 31194232 31194232 G T MATN1 Intron 0.27 TCGA-55-1592-01 1 33954745 33954745 C T ZSCAN20 Missense_Mutation p.P212L 0.23 deleterious(0.04) benign(0.079) TCGA-55-1592-01 1 34554714 34554714 C A CSMD2 Missense_Mutation p.A50S 0.27 deleterious(0.02) probably_damaging(0.987) TCGA-55-1592-01 1 36029491 36029491 G A NCDN Silent p.R578R 0.28 TCGA-55-1592-01 1 39765882 39765882 G C MACF1 Missense_Mutation p.D833H 0.08 possibly_damaging(0.751) TCGA-55-1592-01 1 39788376 39788376 A G MACF1 Missense_Mutation p.I1381V 0.26 benign(0.005) TCGA-55-1592-01 1 41236480 41236480 C T NFYC Missense_Mutation p.P349S 0.15 tolerated_low_confidence(0.08) benign(0.005) TCGA-55-1592-01 1 41948217 41948217 C T EDN2 Silent p.R88R 0.33 TCGA-55-1592-01 1 50659526 50659526 G A ELAVL4 Silent p.L165L 0.28 TCGA-55-1592-01 1 52301803 52301803 T C NRD1 Missense_Mutation p.M306V 0.30 deleterious(0) possibly_damaging(0.887) TCGA-55-1592-01 1 52704107 52704107 C T ZFYVE9 Missense_Mutation p.L340F 0.31 tolerated_low_confidence(0.19) benign(0.002) TCGA-55-1592-01 1 57185334 57185334 C G C1orf168 3'UTR 0.32 TCGA-55-1592-01 1 66838408 66838408 C A PDE4B 3'UTR 0.20 TCGA-55-1592-01 1 67878931 67878931 G C SERBP1 Missense_Mutation p.P396A 0.11 deleterious(0) probably_damaging(0.999) TCGA-55-1592-01 1 68512673 68512673 C A DIRAS3 Missense_Mutation p.R103L 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-55-1592-01 1 72163734 72163734 A T NEGR1 Missense_Mutation p.D208E 0.14 tolerated(0.13) possibly_damaging(0.565) TCGA-55-1592-01 1 78098634 78098634 G A ZZZ3 Missense_Mutation p.P136S 0.34 tolerated_low_confidence(0.14) benign(0.042) TCGA-55-1592-01 1 79129581 79129581 C A IFI44 3'UTR 0.15 TCGA-55-1592-01 1 89481013 89481013 G A GBP3 Missense_Mutation p.T92I 0.11 deleterious(0.04) benign(0.02) TCGA-55-1592-01 1 89481019 89481019 T G GBP3 Missense_Mutation p.E90A 0.11 deleterious(0.01) benign(0.002) TCGA-55-1592-01 1 90178876 90178876 G T LRRC8C Missense_Mutation p.R249S 0.32 deleterious(0) probably_damaging(0.991) TCGA-55-1592-01 1 91406850 91406850 C A ZNF644 Missense_Mutation p.G21W 0.20 deleterious_low_confidence(0.01) benign(0.009) TCGA-55-1592-01 1 99470209 99470209 C T LPPR5 Missense_Mutation p.A7T 0.39 tolerated_low_confidence(0.2) benign(0) TCGA-55-1592-01 20 1918228 1918228 T C SIRPA 3'UTR 0.07 TCGA-55-1592-01 20 23016252 23016252 G T SSTR4 Silent p.A44A 0.30 TCGA-55-1592-01 20 2464027 2464027 C A ZNF343 Missense_Mutation p.G527V 0.32 deleterious(0) probably_damaging(0.988) TCGA-55-1592-01 20 30253651 30253651 G T BCL2L1 3'UTR 0.29 TCGA-55-1592-01 20 31661396 31661396 G T BPIFB3 Silent p.L472L 0.22 TCGA-55-1592-01 20 31680430 31680430 A T BPIFB4 Missense_Mutation p.Q437L 0.33 deleterious(0.01) benign(0.139) TCGA-55-1592-01 20 3340199 3340199 C T C20orf194 Silent p.K218K 0.07 TCGA-55-1592-01 20 334097 334097 G A NRSN2 Missense_Mutation p.D145N 0.06 tolerated(0.07) possibly_damaging(0.837) TCGA-55-1592-01 20 3529820 3529820 C A ATRN Missense_Mutation p.P316H 0.32 deleterious(0.01) possibly_damaging(0.76) TCGA-55-1592-01 20 3672716 3672716 C A SIGLEC1 Silent p.T1388T 0.12 TCGA-55-1592-01 20 39990391 39990391 G T EMILIN3 Missense_Mutation p.S606R 0.33 deleterious(0.01) possibly_damaging(0.545) TCGA-55-1592-01 20 40125887 40125887 C A CHD6 Intron 0.33 TCGA-55-1592-01 20 44047576 44047576 A T PIGT Silent p.T150T 0.26 TCGA-55-1592-01 20 44278014 44278014 C T WFDC11 Missense_Mutation p.C42Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-55-1592-01 20 44671860 44671860 C A SLC12A5 Missense_Mutation p.L402M 0.10 tolerated(0.15) benign(0.139) TCGA-55-1592-01 20 49558641 49558641 C T DPM1 Missense_Mutation p.D141N 0.05 deleterious(0.01) possibly_damaging(0.732) TCGA-55-1592-01 20 51871901 51871901 G A TSHZ2 Missense_Mutation p.R635H 0.05 tolerated(0.1) benign(0.004) TCGA-55-1592-01 20 58318161 58318161 G A PHACTR3 Splice_Site p.X40_splice 0.32 TCGA-55-1592-01 20 60890128 60890128 C T LAMA5 Missense_Mutation p.R2668Q 0.18 benign(0.04) TCGA-55-1592-01 21 34166538 34166538 G A C21orf62 Silent p.T65T 0.08 TCGA-55-1592-01 21 45970637 45970637 G C KRTAP10-2 Missense_Mutation p.C235W 0.44 deleterious(0) unknown(0) TCGA-55-1592-01 21 47786561 47786561 A G PCNT Missense_Mutation p.Q891R 0.10 benign(0) TCGA-55-1592-01 22 16279286 16279286 G T POTEH Missense_Mutation p.L313M 0.04 deleterious(0.02) probably_damaging(1) TCGA-55-1592-01 22 18905888 18905888 C T PRODH Silent p.E456E 0.15 TCGA-55-1592-01 22 23482595 23482595 G - RTDR1 Frame_Shift_Del p.Q5Rfs*27 0.13 TCGA-55-1592-01 22 32439304 32439304 G - SLC5A1 Frame_Shift_Del p.V13Sfs*26 0.30 TCGA-55-1592-01 22 37966600 37966600 G T LGALS2 Missense_Mutation p.P78T 0.29 tolerated(0.12) benign(0.173) TCGA-55-1592-01 22 38209491 38209491 G T GCAT Missense_Mutation p.A177S 0.48 deleterious(0) probably_damaging(0.919) TCGA-55-1592-01 22 38212280 38212280 G T GCAT Missense_Mutation p.G380C 0.13 deleterious(0) probably_damaging(0.998) TCGA-55-1592-01 22 38512182 38512182 C T PLA2G6 Silent p.P593P 0.05 TCGA-55-1592-01 22 46319011 46319011 T A WNT7B Missense_Mutation p.S259C 0.32 deleterious(0.02) possibly_damaging(0.886) TCGA-55-1592-01 22 50969207 50969207 C A ODF3B Silent p.L205L 0.25 TCGA-55-1592-01 2 100210522 100210522 C T AFF3 Missense_Mutation p.R559K 0.40 tolerated(0.06) probably_damaging(0.941) TCGA-55-1592-01 2 101093874 101093874 G A NMS Missense_Mutation p.G87R 0.22 tolerated(0.19) benign(0.009) TCGA-55-1592-01 2 103141553 103141553 G A SLC9A4 Missense_Mutation p.R630H 0.05 deleterious(0.03) possibly_damaging(0.748) TCGA-55-1592-01 2 10350487 10350487 G A C2orf48 Missense_Mutation p.A82T 0.36 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-55-1592-01 2 107460211 107460211 C G ST6GAL2 Missense_Mutation p.D75H 0.19 possibly_damaging(0.647) TCGA-55-1592-01 2 120723109 120723109 A G PTPN4 Missense_Mutation p.I816V 0.45 tolerated(1) benign(0) TCGA-55-1592-01 2 128394197 128394197 G C MYO7B Missense_Mutation p.K2041N 0.17 deleterious(0.01) possibly_damaging(0.848) TCGA-55-1592-01 2 133489461 133489461 C A NCKAP5 Missense_Mutation p.M1764I 0.20 tolerated(0.91) benign(0) TCGA-55-1592-01 2 141032165 141032165 C A LRP1B Missense_Mutation p.V4324L 0.34 benign(0.167) TCGA-55-1592-01 2 162868405 162868405 C G DPP4 Missense_Mutation p.S577T 0.04 tolerated(0.22) benign(0.421) TCGA-55-1592-01 2 163055370 163055370 A T FAP Silent p.P433P 0.19 TCGA-55-1592-01 2 166201299 166201299 C A SCN2A Missense_Mutation p.L933M 0.24 deleterious(0) probably_damaging(0.972) TCGA-55-1592-01 2 166900188 166900188 A T SCN1A Silent p.T678T 0.38 TCGA-55-1592-01 2 167168167 167168167 C G SCN9A Missense_Mutation p.E34Q 0.19 tolerated(0.24) benign(0.005) TCGA-55-1592-01 2 168100642 168100642 T C XIRP2 Missense_Mutation p.W914R 0.25 probably_damaging(1) TCGA-55-1592-01 2 170097415 170097415 C A LRP2 Intron 0.13 TCGA-55-1592-01 2 170336019 170336019 G T BBS5 5'UTR 0.19 TCGA-55-1592-01 2 176988915 176988915 G T HOXD9 3'UTR 0.08 TCGA-55-1592-01 2 179395627 179395627 G T TTN Missense_Mutation p.P35239T 0.32 TCGA-55-1592-01 2 179497651 179497651 C A TTN Missense_Mutation p.V14403L 0.12 TCGA-55-1592-01 2 179550274 179550274 G A TTN Missense_Mutation p.S10788F 0.36 TCGA-55-1592-01 2 179639767 179639767 G T TTN Missense_Mutation p.S2224Y 0.34 TCGA-55-1592-01 2 197182014 197182014 G T HECW2 Missense_Mutation p.D806E 0.24 tolerated(0.17) benign(0.03) TCGA-55-1592-01 2 197298062 197298062 T A HECW2 Missense_Mutation p.Q29L 0.24 tolerated_low_confidence(0.07) benign(0.051) TCGA-55-1592-01 2 197674127 197674127 G C C2orf66 5'UTR 0.09 TCGA-55-1592-01 2 198482528 198482528 A G RFTN2 Missense_Mutation p.I349T 0.22 deleterious(0.04) possibly_damaging(0.831) TCGA-55-1592-01 2 20153619 20153619 C A WDR35 Missense_Mutation p.R470L 0.14 tolerated(0.11) benign(0.159) TCGA-55-1592-01 2 207041754 207041754 G T GPR1 Missense_Mutation p.T73N 0.04 deleterious(0.01) possibly_damaging(0.784) TCGA-55-1592-01 2 207527696 207527696 G T DYTN Missense_Mutation p.L522M 0.33 deleterious(0.04) possibly_damaging(0.907) TCGA-55-1592-01 2 207635937 207635937 G C FASTKD2 Missense_Mutation p.E305Q 0.25 deleterious(0.05) possibly_damaging(0.548) TCGA-55-1592-01 2 209141468 209141468 G T PIKFYVE Missense_Mutation p.G119C 0.27 deleterious(0.01) possibly_damaging(0.479) TCGA-55-1592-01 2 218925700 218925700 A T CXCR2P1 RNA 0.30 TCGA-55-1592-01 2 227731981 227731981 G A RHBDD1 Silent p.P171P 0.17 TCGA-55-1592-01 2 228788697 228788697 G T DAW1 3'UTR 0.26 TCGA-55-1592-01 2 233245175 233245175 C T ALPP Silent p.L280L 0.03 TCGA-55-1592-01 2 233271579 233271579 T A ALPPL2 5'UTR 0.22 TCGA-55-1592-01 2 235951264 235951264 C T SH3BP4 Silent p.I617I 0.07 TCGA-55-1592-01 2 242741438 242741438 T C GAL3ST2 Missense_Mutation p.F121S 0.34 deleterious(0) probably_damaging(0.983) TCGA-55-1592-01 2 242742789 242742789 C G GAL3ST2 Missense_Mutation p.F135L 0.27 tolerated(0.06) benign(0.042) TCGA-55-1592-01 2 26534034 26534034 G C GPR113 Silent p.A854A 0.33 TCGA-55-1592-01 2 26676417 26676417 G T DRC1 Missense_Mutation p.R640M 0.16 deleterious(0.03) possibly_damaging(0.882) TCGA-55-1592-01 2 29519878 29519878 A G ALK Missense_Mutation p.S565P 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-55-1592-01 2 37302747 37302747 G A HEATR5B Silent p.L160L 0.22 TCGA-55-1592-01 2 38297933 38297933 G C CYP1B1 Missense_Mutation p.L522V 0.31 tolerated(0.07) benign(0.132) TCGA-55-1592-01 2 42530318 42530318 A G EML4 Silent p.R572R 0.14 TCGA-55-1592-01 2 42578436 42578436 T A COX7A2L Missense_Mutation p.T90S 0.35 deleterious(0.01) possibly_damaging(0.827) TCGA-55-1592-01 2 43768305 43768305 A T THADA Missense_Mutation p.V1086E 0.33 tolerated(0.25) benign(0.02) TCGA-55-1592-01 2 47256494 47256494 G T TTC7A Missense_Mutation p.M591I 0.26 tolerated(0.1) benign(0.074) TCGA-55-1592-01 2 47256495 47256495 G T TTC7A Missense_Mutation p.A592S 0.25 deleterious(0.02) probably_damaging(0.995) TCGA-55-1592-01 2 55253145 55253145 A G RTN4 Missense_Mutation p.I697T 0.33 deleterious(0) probably_damaging(0.968) TCGA-55-1592-01 2 55253716 55253716 C T RTN4 Missense_Mutation p.E507K 0.18 deleterious(0) probably_damaging(0.954) TCGA-55-1592-01 2 64808353 64808353 G C AFTPH Missense_Mutation p.D829H 0.09 deleterious(0) probably_damaging(0.992) TCGA-55-1592-01 2 68352354 68352354 C A WDR92 3'Flank 0.11 TCGA-55-1592-01 2 69304605 69304605 A G ANTXR1 Silent p.Q209Q 0.11 TCGA-55-1592-01 2 74597136 74597136 G C DCTN1 Missense_Mutation p.L450V 0.18 deleterious(0.01) possibly_damaging(0.885) TCGA-55-1592-01 2 77746613 77746613 T A LRRTM4 Missense_Mutation p.T128S 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-55-1592-01 2 79314038 79314040 TCT - REG1B In_Frame_Del p.E28del 0.31 TCGA-55-1592-01 2 88885469 88885469 C G EIF2AK3 Missense_Mutation p.D514H 0.35 deleterious(0) probably_damaging(0.98) TCGA-55-1592-01 2 89084383 89084383 A T ANKRD36BP2 RNA 0.30 TCGA-55-1592-01 2 96593003 96593003 T C ANKRD36C 3'Flank 0.28 TCGA-55-1592-01 2 96689958 96689958 C A GPAT2 Silent p.P599P 0.11 TCGA-55-1592-01 2 99193584 99193584 C T INPP4A Nonsense_Mutation p.Q927* 0.42 TCGA-55-1592-01 3 105378032 105378032 G A CBLB Missense_Mutation p.R911C 0.07 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-55-1592-01 3 108219032 108219032 C G MYH15 Missense_Mutation p.K163N 0.55 deleterious(0.01) probably_damaging(0.945) TCGA-55-1592-01 3 11059650 11059650 T A SLC6A1 Silent p.P120P 0.18 TCGA-55-1592-01 3 11382132 11382132 A G ATG7 Silent p.A301A 0.17 TCGA-55-1592-01 3 113955524 113955524 T C ZNF80 Missense_Mutation p.Y133C 0.09 deleterious(0.01) possibly_damaging(0.758) TCGA-55-1592-01 3 114057870 114057870 C A ZBTB20 Missense_Mutation p.M736I 0.36 tolerated_low_confidence(0.45) possibly_damaging(0.708) TCGA-55-1592-01 3 121712504 121712504 C A ILDR1 Silent p.L364L 0.16 TCGA-55-1592-01 3 124739860 124739860 A T HEG1 Missense_Mutation p.L343Q 0.15 tolerated(0.08) probably_damaging(0.95) TCGA-55-1592-01 3 130285632 130285633 - C COL6A6 Frame_Shift_Ins p.F458Vfs*15 0.20 TCGA-55-1592-01 3 130287011 130287011 G C COL6A6 Missense_Mutation p.G655A 0.19 deleterious(0.01) possibly_damaging(0.887) TCGA-55-1592-01 3 138375084 138375084 A G PIK3CB Missense_Mutation p.I992T 0.24 deleterious(0.03) possibly_damaging(0.895) TCGA-55-1592-01 3 140277665 140277665 C T CLSTN2 Silent p.A669A 0.27 TCGA-55-1592-01 3 140281113 140281113 G - CLSTN2 Frame_Shift_Del p.D726Mfs*17 0.20 TCGA-55-1592-01 3 142567171 142567171 A T PCOLCE2 Silent p.P112P 0.35 TCGA-55-1592-01 3 147108910 147108910 C T ZIC4 Missense_Mutation p.C321Y 0.31 deleterious(0) probably_damaging(0.99) TCGA-55-1592-01 3 147108987 147108987 G T ZIC4 Missense_Mutation p.F295L 0.41 deleterious(0) probably_damaging(0.983) TCGA-55-1592-01 3 148459426 148459426 C A AGTR1 Missense_Mutation p.L202M 0.19 deleterious(0.01) probably_damaging(0.991) TCGA-55-1592-01 3 149470067 149470068 - A COMMD2 Frame_Shift_Ins p.E26Rfs*30 0.21 TCGA-55-1592-01 3 15288300 15288300 G C CAPN7 Missense_Mutation p.R691P 0.30 deleterious(0.04) possibly_damaging(0.892) TCGA-55-1592-01 3 16254145 16254145 G T GALNT15 Missense_Mutation p.D423Y 0.32 tolerated(1) possibly_damaging(0.576) TCGA-55-1592-01 3 164712076 164712076 C T SI Missense_Mutation p.G1604S 0.16 deleterious(0) probably_damaging(1) TCGA-55-1592-01 3 167078466 167078466 G T ZBBX Missense_Mutation p.Q107K 0.26 tolerated(0.06) benign(0.153) TCGA-55-1592-01 3 169693437 169693437 G T SEC62 Missense_Mutation p.K26N 0.32 deleterious(0) probably_damaging(0.97) TCGA-55-1592-01 3 170216672 170216672 C A SLC7A14 Silent p.G181G 0.25 TCGA-55-1592-01 3 173993231 173993231 T C NLGN1 Missense_Mutation p.F258S 0.44 deleterious(0) probably_damaging(0.992) TCGA-55-1592-01 3 185431229 185431229 T C C3orf65 Missense_Mutation p.L5P 0.16 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-55-1592-01 3 186395193 186395193 C T HRG Missense_Mutation p.H367Y 0.19 deleterious(0.02) benign(0.009) TCGA-55-1592-01 3 186954049 186954049 G C MASP1 Missense_Mutation p.A537G 0.37 tolerated(0.06) benign(0.003) TCGA-55-1592-01 3 188202445 188202445 A T LPP Missense_Mutation p.N87Y 0.15 tolerated(1) benign(0.001) TCGA-55-1592-01 3 21792502 21792502 G C ZNF385D 5'UTR 0.20 TCGA-55-1592-01 3 27490147 27490147 G C SLC4A7 Missense_Mutation p.S86C 0.11 deleterious(0.01) benign(0.438) TCGA-55-1592-01 3 39178787 39178787 G T TTC21A Missense_Mutation p.R1127L 0.48 deleterious(0.04) benign(0.006) TCGA-55-1592-01 3 42299485 42299485 A G CCK 3'UTR 0.25 TCGA-55-1592-01 3 48207217 48207217 G C CDC25A Missense_Mutation p.S367C 0.21 deleterious(0.02) probably_damaging(0.986) TCGA-55-1592-01 3 58923422 58923422 G - C3orf67 5'UTR 0.34 TCGA-55-1592-01 3 7620536 7620536 C T GRM7 Missense_Mutation p.A648V 0.18 deleterious(0) probably_damaging(0.997) TCGA-55-1592-01 3 77600017 77600017 G T ROBO2 Missense_Mutation p.V386L 0.45 deleterious(0) benign(0.299) TCGA-55-1592-01 3 88040798 88040798 G A HTR1F Missense_Mutation p.G300D 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-1592-01 3 98073318 98073318 A G OR5K4 Silent p.Q207Q 0.05 TCGA-55-1592-01 3 99552027 99552027 C T FILIP1L 3'UTR 0.29 TCGA-55-1592-01 4 101344211 101344211 C T EMCN Missense_Mutation p.A179T 0.24 tolerated(0.58) probably_damaging(0.989) TCGA-55-1592-01 4 103718493 103718493 G A UBE2D3 3'Flank 0.20 TCGA-55-1592-01 4 107844969 107844969 T A DKK2 3'UTR 0.25 TCGA-55-1592-01 4 107845748 107845748 T A DKK2 Silent p.G161G 0.22 TCGA-55-1592-01 4 109088767 109088767 T C LEF1 Missense_Mutation p.I53V 0.20 tolerated(1) probably_damaging(0.989) TCGA-55-1592-01 4 111436540 111436540 C T ENPEP Missense_Mutation p.S484F 0.30 deleterious(0) probably_damaging(0.996) TCGA-55-1592-01 4 113461166 113461166 C T C4orf21 Missense_Mutation p.V2009I 0.13 deleterious(0) probably_damaging(0.993) TCGA-55-1592-01 4 115997379 115997379 C T NDST4 Missense_Mutation p.G272S 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-55-1592-01 4 123165092 123165092 C T KIAA1109 Missense_Mutation p.P1609L 0.13 probably_damaging(0.94) TCGA-55-1592-01 4 123372977 123372977 G T IL2 Missense_Mutation p.T131K 0.16 tolerated(0.34) benign(0.051) TCGA-55-1592-01 4 128842683 128842683 G A MFSD8 Missense_Mutation p.P449L 0.35 deleterious(0) probably_damaging(1) TCGA-55-1592-01 4 140587104 140587104 A G MGST2 5'UTR 0.42 TCGA-55-1592-01 4 148559746 148559746 T C PRMT10 Silent p.G825G 0.19 TCGA-55-1592-01 4 151765810 151765810 C G LRBA Missense_Mutation p.K1487N 0.34 deleterious(0.02) probably_damaging(0.996) TCGA-55-1592-01 4 169348279 169348279 A T DDX60L Silent p.V624V 0.36 TCGA-55-1592-01 4 175413100 175413100 A G HPGD 3'UTR 0.27 TCGA-55-1592-01 4 187541804 187541804 A C FAT1 Missense_Mutation p.F1979C 0.23 probably_damaging(0.999) TCGA-55-1592-01 4 189022242 189022242 C T TRIML2 Missense_Mutation p.E100K 0.20 tolerated(0.27) benign(0.214) TCGA-55-1592-01 4 2307157 2307157 C T ZFYVE28 Missense_Mutation p.A304T 0.40 tolerated(0.36) benign(0.003) TCGA-55-1592-01 4 25677973 25677973 G T SLC34A2 Missense_Mutation p.G559W 0.19 deleterious(0) probably_damaging(0.993) TCGA-55-1592-01 4 41687737 41687737 G C LIMCH1 Missense_Mutation p.Q942H 0.26 tolerated(0.13) benign(0.396) TCGA-55-1592-01 4 44713078 44713078 T C GNPDA2 Silent p.L162L 0.29 TCGA-55-1592-01 4 4864774 4864774 C A MSX1 Nonsense_Mutation p.Y272* 0.22 TCGA-55-1592-01 4 57181273 57181273 G T KIAA1211 Silent p.R535R 0.50 TCGA-55-1592-01 4 6303098 6303098 G T WFS1 Missense_Mutation p.G526C 0.13 deleterious(0) probably_damaging(1) TCGA-55-1592-01 4 6303099 6303099 G T WFS1 Missense_Mutation p.G526V 0.13 deleterious(0) probably_damaging(0.998) TCGA-55-1592-01 4 65180482 65180482 C A TECRL Splice_Site p.X146_splice 0.06 TCGA-55-1592-01 4 70592821 70592821 G C SULT1B1 Missense_Mutation p.F292L 0.07 deleterious(0.05) probably_damaging(0.999) TCGA-55-1592-01 4 71346890 71346890 A C MUC7 Missense_Mutation p.E143D 0.16 tolerated(0.34) possibly_damaging(0.866) TCGA-55-1592-01 4 73149304 73149304 G A ADAMTS3 Missense_Mutation p.T1056I 0.34 tolerated(0.1) benign(0.058) TCGA-55-1592-01 4 76927399 76927399 A T CXCL9 Nonsense_Mutation p.C31* 0.32 TCGA-55-1592-01 4 88534203 88534203 G T DSPP Missense_Mutation p.D289Y 0.24 probably_damaging(0.994) TCGA-55-1592-01 4 91230336 91230336 G T CCSER1 Missense_Mutation p.A301S 0.26 tolerated_low_confidence(0.09) probably_damaging(0.997) TCGA-55-1592-01 5 137909529 137909529 T C HSPA9 Missense_Mutation p.I51V 0.53 tolerated_low_confidence(1) benign(0.001) TCGA-55-1592-01 5 140481535 140481535 G C PCDHB3 Missense_Mutation p.K434N 0.28 deleterious_low_confidence(0) benign(0.002) TCGA-55-1592-01 5 140736176 140736176 C T PCDHGA4 Missense_Mutation p.S470F 0.25 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-55-1592-01 5 147693664 147693664 T A SPINK7 Missense_Mutation p.V30E 0.50 tolerated(0.09) possibly_damaging(0.9) TCGA-55-1592-01 5 156381703 156381703 C G TIMD4 Silent p.L41L 0.46 TCGA-55-1592-01 5 17275998 17275998 G A BASP1 Missense_Mutation p.V225M 0.14 deleterious(0) probably_damaging(0.988) TCGA-55-1592-01 5 175919294 175919294 G A FAF2 Silent p.G148G 0.16 TCGA-55-1592-01 5 23522757 23522757 C T PRDM9 Silent p.S215S 0.10 TCGA-55-1592-01 5 33937437 33937437 C A RXFP3 Silent p.R198R 0.39 TCGA-55-1592-01 5 3600327 3600327 C T IRX1 Missense_Mutation p.A422V 0.41 tolerated(0.39) benign(0) TCGA-55-1592-01 5 43297159 43297159 T C HMGCS1 Silent p.A228A 0.28 TCGA-55-1592-01 5 5190105 5190105 C T ADAMTS16 Missense_Mutation p.H357Y 0.37 deleterious(0) probably_damaging(0.998) TCGA-55-1592-01 5 52204758 52204758 A T ITGA1 Missense_Mutation p.T496S 0.36 tolerated(0.67) probably_damaging(0.991) TCGA-55-1592-01 5 52351515 52351515 A G ITGA2 Missense_Mutation p.I309M 0.12 deleterious(0) probably_damaging(0.995) TCGA-55-1592-01 5 52779455 52779455 G A FST Silent p.G133G 0.28 TCGA-55-1592-01 5 76128923 76128923 T A F2RL1 Missense_Mutation p.L164H 0.22 deleterious(0) probably_damaging(0.993) TCGA-55-1592-01 5 7690926 7690926 G T ADCY2 Silent p.L281L 0.23 TCGA-55-1592-01 5 7727285 7727285 C T ADCY2 Silent p.A594A 0.04 TCGA-55-1592-01 5 78135202 78135202 G A ARSB Missense_Mutation p.P397L 0.22 deleterious(0.03) possibly_damaging(0.52) TCGA-55-1592-01 5 78426781 78426781 C A BHMT Missense_Mutation p.L355I 0.46 tolerated(0.07) benign(0.095) TCGA-55-1592-01 6 100395759 100395759 G A MCHR2 Missense_Mutation p.H91Y 0.19 deleterious(0) probably_damaging(0.993) TCGA-55-1592-01 6 100838954 100838954 C A SIM1 Missense_Mutation p.W528C 0.18 deleterious_low_confidence(0.05) probably_damaging(0.999) TCGA-55-1592-01 6 107035616 107035616 G A RTN4IP1 Nonsense_Mutation p.R310* 0.34 TCGA-55-1592-01 6 114277837 114277837 G C HDAC2 Missense_Mutation p.P102A 0.11 deleterious(0) probably_damaging(0.937) TCGA-55-1592-01 6 128134623 128134623 T A THEMIS Missense_Mutation p.Q388L 0.23 deleterious(0) possibly_damaging(0.72) TCGA-55-1592-01 6 133849981 133849981 A G EYA4 3'UTR 0.08 TCGA-55-1592-01 6 142397123 142397123 A T NMBR Missense_Mutation p.W279R 0.39 deleterious(0) probably_damaging(1) TCGA-55-1592-01 6 143080972 143080972 G C HIVEP2 Nonsense_Mutation p.Y2151* 0.21 TCGA-55-1592-01 6 151894422 151894422 C A CCDC170 Missense_Mutation p.S296R 0.26 tolerated(0.33) benign(0.047) TCGA-55-1592-01 6 163483243 163483243 A C PACRG Missense_Mutation p.E118A 0.17 deleterious(0) probably_damaging(0.997) TCGA-55-1592-01 6 167754837 167754837 A T TTLL2 Silent p.A483A 0.21 TCGA-55-1592-01 6 22569979 22569979 T A HDGFL1 Missense_Mutation p.Y59N 0.27 deleterious(0) probably_damaging(0.999) TCGA-55-1592-01 6 24601417 24601417 G A KIAA0319 5'UTR 0.19 TCGA-55-1592-01 6 26056435 26056435 C T HIST1H1C Silent p.E74E 0.21 TCGA-55-1592-01 6 26123802 26123802 C G HIST1H2BC Missense_Mutation p.A111P 0.07 deleterious_low_confidence(0) probably_damaging(0.949) TCGA-55-1592-01 6 26431814 26431814 C A BTN2A3P RNA 0.33 TCGA-55-1592-01 6 27115128 27115128 A T HIST1H2AH Missense_Mutation p.N74I 0.26 deleterious_low_confidence(0.03) benign(0.392) TCGA-55-1592-01 6 27776053 27776053 C A HIST1H2AI Silent p.A22A 0.09 TCGA-55-1592-01 6 27782453 27782453 G T HIST1H2AJ Silent p.A22A 0.42 TCGA-55-1592-01 6 29394899 29394899 G A OR11A1 Missense_Mutation p.H174Y 0.28 deleterious(0.04) benign(0.001) TCGA-55-1592-01 6 32087669 32087669 G A ATF6B Missense_Mutation p.P300S 0.34 tolerated(0.06) benign(0.019) TCGA-55-1592-01 6 38867598 38867598 G T DNAH8 Missense_Mutation p.G2820V 0.11 probably_damaging(1) TCGA-55-1592-01 6 43308638 43308638 A G ZNF318 Missense_Mutation p.F1129L 0.06 probably_damaging(0.999) TCGA-55-1592-01 6 44140984 44140984 G A CAPN11 Missense_Mutation p.G231E 0.27 deleterious(0) probably_damaging(0.986) TCGA-55-1592-01 6 44371547 44371547 C A CDC5L Missense_Mutation p.R181S 0.38 deleterious(0) probably_damaging(0.979) TCGA-55-1592-01 6 47682493 47682493 C T GPR115 Silent p.V504V 0.05 TCGA-55-1592-01 6 50011359 50011359 C T DEFB112 Missense_Mutation p.D91N 0.19 tolerated(0.22) possibly_damaging(0.539) TCGA-55-1592-01 6 51586695 51586695 C A PKHD1 Intron 0.26 TCGA-55-1592-01 6 53516293 53516293 G A KLHL31 3'UTR 0.15 TCGA-55-1592-01 6 54025173 54025173 T A MLIP Missense_Mutation p.D231E 0.25 tolerated(0.71) probably_damaging(0.998) TCGA-55-1592-01 6 66204948 66204948 G T EYS Missense_Mutation p.T119K 0.27 tolerated_low_confidence(0.1) probably_damaging(0.978) TCGA-55-1592-01 6 70071247 70071247 T A BAI3 Missense_Mutation p.M1361K 0.19 deleterious(0.02) benign(0.01) TCGA-55-1592-01 6 71562317 71562317 G T SMAP1 Nonsense_Mutation p.G247* 0.03 TCGA-55-1592-01 6 71562318 71562318 G T SMAP1 Missense_Mutation p.G247V 0.03 deleterious(0) probably_damaging(1) TCGA-55-1592-01 6 7240734 7240734 G C RREB1 Missense_Mutation p.R1291P 0.30 deleterious(0) probably_damaging(0.996) TCGA-55-1592-01 6 74072525 74072525 G A KHDC3L Missense_Mutation p.G25S 0.21 tolerated(0.07) probably_damaging(0.939) TCGA-55-1592-01 6 74228549 74228549 T C EEF1A1 Missense_Mutation p.K215R 0.38 deleterious_low_confidence(0.01) benign(0.069) TCGA-55-1592-01 6 76728444 76728444 G A IMPG1 Silent p.S266S 0.15 TCGA-55-1592-01 6 85446428 85446428 G C TBX18 Missense_Mutation p.S600C 0.36 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-55-1592-01 6 87968870 87968870 A T ZNF292 Missense_Mutation p.L1841F 0.31 deleterious(0.02) possibly_damaging(0.905) TCGA-55-1592-01 6 90604983 90604983 G T GJA10 Missense_Mutation p.V266L 0.26 tolerated(0.14) benign(0.024) TCGA-55-1592-01 6 96999336 96999336 T A UFL1 Missense_Mutation p.S616T 0.04 tolerated(0.06) benign(0.001) TCGA-55-1592-01 6 97597755 97597755 C T MMS22L Nonsense_Mutation p.W1208* 0.18 TCGA-55-1592-01 7 100200282 100200282 C G PCOLCE Intron 0.23 TCGA-55-1592-01 7 103017307 103017307 A T SLC26A5 Silent p.I663I 0.22 TCGA-55-1592-01 7 103155820 103155820 C T RELN Missense_Mutation p.R2644K 0.17 tolerated(0.57) benign(0) TCGA-55-1592-01 7 106524641 106524641 C T PIK3CG Silent p.G934G 0.36 TCGA-55-1592-01 7 107743504 107743504 G A LAMB4 Missense_Mutation p.P389S 0.42 deleterious(0.03) probably_damaging(1) TCGA-55-1592-01 7 117067548 117067548 G T ASZ1 5'UTR 0.39 TCGA-55-1592-01 7 127732150 127732150 G A SND1 3'UTR 0.12 TCGA-55-1592-01 7 137586170 137586170 T A CREB3L2 Splice_Site p.X325_splice 0.09 TCGA-55-1592-01 7 138713464 138713464 C G ZC3HAV1L Missense_Mutation p.K248N 0.12 tolerated(0.1) benign(0.009) TCGA-55-1592-01 7 140301227 140301227 C G DENND2A Missense_Mutation p.R324T 0.10 deleterious(0.04) possibly_damaging(0.703) TCGA-55-1592-01 7 142250802 142250802 C A TRBV6-4 Missense_Mutation p.G82V 0.18 deleterious(0.01) probably_damaging(0.956) TCGA-55-1592-01 7 142570163 142570163 G A TRPV6 Silent p.C619C 0.10 TCGA-55-1592-01 7 142640627 142640627 A G KEL Missense_Mutation p.V550A 0.25 tolerated(0.05) benign(0.344) TCGA-55-1592-01 7 143827010 143827010 C A OR2A14 Missense_Mutation p.Q269K 0.23 tolerated(0.09) benign(0.038) TCGA-55-1592-01 7 14661113 14661113 G A DGKB Nonsense_Mutation p.Q393* 0.34 TCGA-55-1592-01 7 150817157 150817157 C T AGAP3 Silent p.R351R 0.09 TCGA-55-1592-01 7 150932245 150932245 C A CHPF2 Silent p.A125A 0.22 TCGA-55-1592-01 7 154379601 154379601 T G DPP6 Intron 0.33 TCGA-55-1592-01 7 154379663 154379663 G T DPP6 Intron 0.43 TCGA-55-1592-01 7 26236615 26236615 T G HNRNPA2B1 Missense_Mutation p.H108P 0.24 deleterious(0.02) unknown(0) TCGA-55-1592-01 7 26236626 26236626 T G HNRNPA2B1 Missense_Mutation p.K104N 0.25 deleterious(0.01) benign(0.184) TCGA-55-1592-01 7 29928925 29928925 A T WIPF3 Missense_Mutation p.D418V 0.20 deleterious_low_confidence(0) unknown(0) TCGA-55-1592-01 7 34091581 34091581 G T BMPER Missense_Mutation p.R262M 0.19 deleterious(0.04) benign(0.229) TCGA-55-1592-01 7 39243834 39243834 G C POU6F2 Missense_Mutation p.G64A 0.20 tolerated_low_confidence(0.11) possibly_damaging(0.88) TCGA-55-1592-01 7 54610349 54610349 C A VSTM2A 5'UTR 0.25 TCGA-55-1592-01 7 75171247 75171247 C A HIP1 Missense_Mutation p.M981I 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-55-1592-01 7 80387687 80387687 C T SEMA3C Missense_Mutation p.D535N 0.04 deleterious(0.02) probably_damaging(0.993) TCGA-55-1592-01 7 82544499 82544499 C G PCLO Missense_Mutation p.G4268A 0.20 unknown(0) TCGA-55-1592-01 7 92099512 92099512 A T ERVW-1 Missense_Mutation p.F62I 0.23 tolerated(0.19) benign(0.217) TCGA-55-1592-01 7 93555536 93555536 G T GNG11 3'UTR 0.19 TCGA-55-1592-01 7 98533224 98533224 A G TRRAP Missense_Mutation p.E1346G 0.41 probably_damaging(0.937) TCGA-55-1592-01 7 99311132 99311132 C T CYP3A7 Missense_Mutation p.M275I 0.12 deleterious(0.01) benign(0.416) TCGA-55-1592-01 7 99358457 99358457 A C CYP3A4 Silent p.P467P 0.43 TCGA-55-1592-01 8 103664623 103664623 C G KLF10 Missense_Mutation p.E13D 0.04 deleterious_low_confidence(0.04) benign(0.134) TCGA-55-1592-01 8 104927789 104927789 A C RIMS2 Missense_Mutation p.S627R 0.06 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-1592-01 8 105361663 105361663 C T DCSTAMP Silent p.L295L 0.19 TCGA-55-1592-01 8 110457293 110457293 C A PKHD1L1 Missense_Mutation p.P1732H 0.41 deleterious(0.01) probably_damaging(0.992) TCGA-55-1592-01 8 110504206 110504206 T A PKHD1L1 Missense_Mutation p.W3407R 0.22 deleterious(0) probably_damaging(0.996) TCGA-55-1592-01 8 113275890 113275890 A T CSMD3 Missense_Mutation p.S3280R 0.34 tolerated(0.27) benign(0.082) TCGA-55-1592-01 8 113651001 113651001 A G CSMD3 Silent p.Y1150Y 0.23 TCGA-55-1592-01 8 117658741 117658741 C A EIF3H Silent p.P310P 0.19 TCGA-55-1592-01 8 122626240 122626240 G T HAS2 3'UTR 0.51 TCGA-55-1592-01 8 122641020 122641020 C T HAS2 Nonsense_Mutation p.W187* 0.18 TCGA-55-1592-01 8 134478232 134478232 C A ST3GAL1 Silent p.S136S 0.23 TCGA-55-1592-01 8 139164526 139164526 C A FAM135B Missense_Mutation p.G731V 0.35 tolerated(0.08) possibly_damaging(0.642) TCGA-55-1592-01 8 139164527 139164527 C A FAM135B Nonsense_Mutation p.G731* 0.35 TCGA-55-1592-01 8 139380236 139380236 G T FAM135B 5'UTR 0.13 TCGA-55-1592-01 8 144732931 144732931 G - ZNF623 Frame_Shift_Del p.K298Rfs*89 0.20 TCGA-55-1592-01 8 145623236 145623236 A G CPSF1 Missense_Mutation p.L669P 0.18 tolerated(0.06) benign(0.233) TCGA-55-1592-01 8 27891171 27891171 A G NUGGC Missense_Mutation p.V552A 0.08 tolerated(0.06) benign(0.024) TCGA-55-1592-01 8 2855548 2855548 G T CSMD1 Missense_Mutation p.L2788M 0.21 probably_damaging(0.994) TCGA-55-1592-01 8 30703478 30703478 G C TEX15 Missense_Mutation p.T1019S 0.17 tolerated(0.31) benign(0.013) TCGA-55-1592-01 8 39142377 39142377 G T ADAM32 3'UTR 0.23 TCGA-55-1592-01 8 42046532 42046532 C G PLAT Missense_Mutation p.R58P 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-1592-01 8 52359614 52359614 C T PXDNL Missense_Mutation p.S492N 0.20 tolerated(1) benign(0.08) TCGA-55-1592-01 8 53853265 53853265 C A NPBWR1 Silent p.P266P 0.06 TCGA-55-1592-01 8 72754874 72754874 A T MSC 3'UTR 0.14 TCGA-55-1592-01 8 77767721 77767721 C A ZFHX4 Missense_Mutation p.P2855H 0.30 probably_damaging(0.998) TCGA-55-1592-01 8 86042277 86042277 A G LRRCC1 Missense_Mutation p.K584E 0.15 deleterious(0) possibly_damaging(0.493) TCGA-55-1592-01 8 99015950 99015950 G T MATN2 Missense_Mutation p.E422D 0.07 tolerated(0.88) benign(0.001) TCGA-55-1592-01 9 101818644 101818644 G T COL15A1 Missense_Mutation p.G1099W 0.54 deleterious(0) probably_damaging(0.999) TCGA-55-1592-01 9 104375693 104375693 C A GRIN3A Missense_Mutation p.V911F 0.49 deleterious(0) probably_damaging(0.994) TCGA-55-1592-01 9 111947854 111947854 T C EPB41L4B Missense_Mutation p.H778R 0.61 tolerated_low_confidence(0.18) benign(0.002) TCGA-55-1592-01 9 123920102 123920102 A C CNTRL Silent p.A1527A 0.40 TCGA-55-1592-01 9 125782613 125782613 A T RABGAP1 Nonsense_Mutation p.K557* 0.47 TCGA-55-1592-01 9 136230446 136230446 C A SURF4 Missense_Mutation p.V245L 0.21 deleterious(0) possibly_damaging(0.623) TCGA-55-1592-01 9 139396481 139396482 - C NOTCH1 Frame_Shift_Ins p.D1815Gfs*19 0.48 TCGA-55-1592-01 9 21011691 21011691 G T PTPLAD2 Nonsense_Mutation p.Y129* 0.24 TCGA-55-1592-01 9 27949535 27949535 G T LINGO2 Missense_Mutation p.Q379K 0.53 tolerated(0.11) benign(0.022) TCGA-55-1592-01 9 32630480 32630480 G T TAF1L Missense_Mutation p.P1700T 0.28 tolerated_low_confidence(0.15) benign(0.002) TCGA-55-1592-01 9 34257209 34257209 T G KIF24 Missense_Mutation p.Q799P 0.29 deleterious(0.03) benign(0.009) TCGA-55-1592-01 9 35092310 35092310 A C PIGO Missense_Mutation p.F525C 0.60 deleterious(0.03) benign(0.049) TCGA-55-1592-01 9 37724227 37724227 T C FRMPD1 Silent p.N174N 0.68 TCGA-55-1592-01 9 38396791 38396791 G T ALDH1B1 Missense_Mutation p.G349V 0.63 deleterious(0) probably_damaging(0.922) TCGA-55-1592-01 9 40772612 40772612 C A ZNF658 Missense_Mutation p.G888V 0.37 deleterious(0) probably_damaging(1) TCGA-55-1592-01 9 70177854 70177854 C G FOXD4L5 Missense_Mutation p.E44Q 0.24 tolerated_low_confidence(0.08) benign(0.037) TCGA-55-1592-01 9 84607513 84607513 C T SPATA31D1 Silent p.L710L 0.43 TCGA-55-1592-01 9 8486043 8486043 A T PTPRD Missense_Mutation p.L925H 0.26 deleterious(0.01) probably_damaging(0.947) TCGA-55-1592-01 9 86592668 86592668 T C HNRNPK Missense_Mutation p.Q31R 0.21 tolerated(0.06) possibly_damaging(0.61) TCGA-55-1592-01 9 94794786 94794786 C G SPTLC1 Silent p.A461A 0.08 TCGA-55-1592-01 X 106843773 106843773 G T FRMPD3 Missense_Mutation p.R868L 0.51 deleterious(0) benign(0.136) TCGA-55-1592-01 X 119504691 119504691 G T ATP1B4 Missense_Mutation p.K150N 0.76 tolerated(0.39) benign(0.009) TCGA-55-1592-01 X 122769970 122769970 G C THOC2 Missense_Mutation p.L660V 0.06 deleterious(0) possibly_damaging(0.78) TCGA-55-1592-01 X 123631060 123631060 G C TENM1 Silent p.V1167V 0.74 TCGA-55-1592-01 X 125686243 125686243 A G DCAF12L1 Missense_Mutation p.C117R 0.26 deleterious(0) probably_damaging(0.999) TCGA-55-1592-01 X 130218650 130218650 C T ARHGAP36 Missense_Mutation p.R267C 0.09 deleterious(0) possibly_damaging(0.788) TCGA-55-1592-01 X 135829672 135829672 G A ARHGEF6 Missense_Mutation p.T110I 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-1592-01 X 140984475 140984475 G T MAGEC3 Intron 0.72 TCGA-55-1592-01 X 142795241 142795241 C T SPANXN2 Missense_Mutation p.G146E 0.11 deleterious(0.03) unknown(0) TCGA-55-1592-01 X 144906014 144906014 C A SLITRK2 Missense_Mutation p.P691T 0.71 deleterious(0.01) benign(0.391) TCGA-55-1592-01 X 14627186 14627186 C T GLRA2 Silent p.I263I 0.17 TCGA-55-1592-01 X 149919611 149919611 A G MTMR1 Intron 0.33 TCGA-55-1592-01 X 150912021 150912021 A G CNGA2 Missense_Mutation p.E349G 0.10 deleterious(0) probably_damaging(1) TCGA-55-1592-01 X 151533027 151533027 T A GABRA3 Missense_Mutation p.T6S 0.25 tolerated_low_confidence(0.77) benign(0) TCGA-55-1592-01 X 152938064 152938064 C A PNCK Missense_Mutation p.G136C 0.22 deleterious(0.02) probably_damaging(0.959) TCGA-55-1592-01 X 153134081 153134081 C T L1CAM Missense_Mutation p.R494H 0.77 tolerated(0.56) benign(0.001) TCGA-55-1592-01 X 153135921 153135921 A C L1CAM Missense_Mutation p.L243R 0.10 deleterious(0) probably_damaging(0.99) TCGA-55-1592-01 X 16773137 16773137 C T SYAP1 Silent p.L215L 0.53 TCGA-55-1592-01 X 23801932 23801932 G A SAT1 Missense_Mutation p.G45D 0.56 deleterious(0) probably_damaging(0.989) TCGA-55-1592-01 X 30254960 30254960 T G MAGEB3 Missense_Mutation p.Y307D 0.43 deleterious(0) probably_damaging(0.998) TCGA-55-1592-01 X 30254961 30254961 A T MAGEB3 Missense_Mutation p.Y307F 0.41 deleterious(0) probably_damaging(0.998) TCGA-55-1592-01 X 37028810 37028810 C A FAM47C Missense_Mutation p.P776Q 0.35 tolerated(0.16) benign(0.267) TCGA-55-1592-01 X 41000347 41000347 A G USP9X Missense_Mutation p.N300S 0.91 tolerated(0.33) benign(0.039) TCGA-55-1592-01 X 48973405 48973405 C T GPKOW Missense_Mutation p.D298N 0.16 deleterious(0.02) possibly_damaging(0.786) TCGA-55-1592-01 X 48973451 48973451 C T GPKOW Silent p.V282V 0.20 TCGA-55-1592-01 X 51637834 51637834 G T MAGED1 Missense_Mutation p.D53Y 0.38 deleterious_low_confidence(0.01) unknown(0) TCGA-55-1592-01 X 53641577 53641577 T A HUWE1 Missense_Mutation p.S727C 0.50 probably_damaging(0.996) TCGA-55-1592-01 X 67283757 67283757 G - OPHN1 Frame_Shift_Del p.K700Rfs*7 0.42 TCGA-55-1592-01 X 73964291 73964291 G C KIAA2022 Missense_Mutation p.A34G 0.33 tolerated_low_confidence(0.18) benign(0.108) TCGA-55-1592-01 X 78010954 78010954 C A LPAR4 Silent p.V196V 0.23 TCGA-55-1592-01 X 78216847 78216847 G C P2RY10 Missense_Mutation p.C277S 0.52 deleterious(0.01) probably_damaging(0.999) TCGA-55-1592-01 X 82763575 82763575 G T POU3F4 Silent p.V81V 0.70 TCGA-55-1592-01 X 85403695 85403695 G T DACH2 Missense_Mutation p.R24L 0.50 deleterious(0.01) benign(0.06) TCGA-55-1592-01 Y 16941965 16941965 T A NLGN4Y Silent p.G389G 0.40 TCGA-55-1592-01 Y 4925273 4925273 C G PCDH11Y Missense_Mutation p.H137D 0.61 tolerated(0.14) benign(0.023) TCGA-55-1592-01 Y 5605984 5605984 A T PCDH11Y 3'UTR 0.17 TCGA-55-1594-01 10 108434855 108434855 A C SORCS1 Missense_Mutation p.F631C 0.39 deleterious(0) probably_damaging(0.987) TCGA-55-1594-01 10 118969302 118969302 C A KCNK18 Missense_Mutation p.T216K 0.28 tolerated(1) benign(0) TCGA-55-1594-01 10 119043731 119043731 T G PDZD8 Missense_Mutation p.E838A 0.32 deleterious(0) possibly_damaging(0.787) TCGA-55-1594-01 10 126683170 126683170 C A CTBP2 Silent p.G756G 0.14 TCGA-55-1594-01 10 131646712 131646712 G A EBF3 Nonsense_Mutation p.Q349* 0.22 TCGA-55-1594-01 10 134896297 134896297 G A GPR123-AS1 3'Flank 0.21 TCGA-55-1594-01 10 16982170 16982170 G A CUBN Silent p.A1803A 0.21 TCGA-55-1594-01 10 18937479 18937479 C T RP11-139J15.7 Silent p.V45V 0.16 TCGA-55-1594-01 10 45472741 45472741 C T C10orf10 3'UTR 0.47 TCGA-55-1594-01 10 49642948 49642948 C G MAPK8 Missense_Mutation p.S387C 0.27 deleterious_low_confidence(0) benign(0.001) TCGA-55-1594-01 10 71048495 71048495 C T HK1 5'Flank 0.22 TCGA-55-1594-01 10 94452138 94452138 C G HHEX Silent p.L125L 0.44 TCGA-55-1594-01 11 108380461 108380461 C T EXPH5 Missense_Mutation p.D1925N 0.42 tolerated(0.05) possibly_damaging(0.849) TCGA-55-1594-01 11 11941942 11941942 C T USP47 Silent p.F305F 0.22 TCGA-55-1594-01 11 18456297 18456297 G C LDHC Missense_Mutation p.L143F 0.16 deleterious(0.01) probably_damaging(0.925) TCGA-55-1594-01 11 25004819 25004819 G T LUZP2 Missense_Mutation p.D249Y 0.16 tolerated(1) benign(0.118) TCGA-55-1594-01 11 5444131 5444131 C A OR51Q1 Missense_Mutation p.A234D 0.42 tolerated(0.1) benign(0.232) TCGA-55-1594-01 11 55371624 55371624 C A OR4C11 Missense_Mutation p.A76S 0.64 tolerated(0.06) benign(0.128) TCGA-55-1594-01 11 55595383 55595383 C A OR5L2 Missense_Mutation p.S230Y 0.31 deleterious(0) probably_damaging(0.989) TCGA-55-1594-01 11 57080108 57080108 A G TNKS1BP1 Missense_Mutation p.L685P 0.38 deleterious(0) probably_damaging(0.999) TCGA-55-1594-01 11 5969183 5969183 C A OR56A3 Missense_Mutation p.Q203K 0.12 deleterious(0.03) probably_damaging(0.98) TCGA-55-1594-01 11 60543133 60543133 C T MS4A15 Missense_Mutation p.A223V 0.22 deleterious(0.05) benign(0.309) TCGA-55-1594-01 11 64029532 64029532 C T PLCB3 Silent p.L674L 0.30 TCGA-55-1594-01 11 64875899 64875899 C T VPS51 Missense_Mutation p.A319V 0.05 tolerated(0.65) benign(0.001) TCGA-55-1594-01 11 64940248 64940248 C T SPDYC Missense_Mutation p.R204C 0.38 tolerated(0.17) benign(0.431) TCGA-55-1594-01 11 65318931 65318931 C G LTBP3 Missense_Mutation p.E521D 0.23 tolerated(0.29) benign(0.004) TCGA-55-1594-01 11 67219321 67219321 G T GPR152 Missense_Mutation p.P292H 0.29 deleterious(0) probably_damaging(1) TCGA-55-1594-01 11 76227233 76227233 C T C11orf30 Missense_Mutation p.R521W 0.21 deleterious(0) probably_damaging(0.973) TCGA-55-1594-01 11 76871264 76871264 G C MYO7A Missense_Mutation p.G379A 0.56 deleterious(0.01) possibly_damaging(0.9) TCGA-55-1594-01 11 95546154 95546154 G C CEP57 Missense_Mutation p.R87S 0.17 deleterious(0) probably_damaging(0.997) TCGA-55-1594-01 12 104698247 104698247 C A EID3 Missense_Mutation p.R179S 0.14 tolerated(0.22) benign(0.007) TCGA-55-1594-01 12 108957910 108957910 G T ISCU Intron 0.15 TCGA-55-1594-01 12 11183906 11183907 - A TAS2R31 Frame_Shift_Ins p.S10Ffs*15 0.13 TCGA-55-1594-01 12 122748723 122748723 T A VPS33A Silent p.L42L 0.18 TCGA-55-1594-01 12 2977850 2977850 A T FOXM1 Missense_Mutation p.M242K 0.28 deleterious(0) probably_damaging(0.979) TCGA-55-1594-01 12 3938098 3938098 G A PARP11 Silent p.F82F 0.12 TCGA-55-1594-01 12 40013068 40013068 C G ABCD2 Missense_Mutation p.R117T 0.48 deleterious(0) probably_damaging(1) TCGA-55-1594-01 12 52967174 52967174 C T KRT74 Missense_Mutation p.D130N 0.15 deleterious(0.01) benign(0.242) TCGA-55-1594-01 12 55863582 55863582 G T OR6C70 Missense_Mutation p.A114D 0.39 deleterious_low_confidence(0) probably_damaging(0.912) TCGA-55-1594-01 12 56999683 56999683 C T BAZ2A Silent p.R810R 0.30 TCGA-55-1594-01 12 64521497 64521497 T A SRGAP1 Missense_Mutation p.L845I 0.15 tolerated(0.29) benign(0.005) TCGA-55-1594-01 12 81648824 81648824 A G ACSS3 3'UTR 0.75 TCGA-55-1594-01 12 85266387 85266387 T A SLC6A15 Silent p.L432L 0.13 TCGA-55-1594-01 13 20608525 20608525 G C ZMYM2 Missense_Mutation p.K700N 0.29 tolerated(0.06) possibly_damaging(0.526) TCGA-55-1594-01 13 21557918 21557918 G C LATS2 Missense_Mutation p.Q643E 0.21 tolerated(0.08) probably_damaging(0.977) TCGA-55-1594-01 13 22255205 22255205 C A FGF9 Missense_Mutation p.A101E 0.55 tolerated(0.28) probably_damaging(0.94) TCGA-55-1594-01 13 58208543 58208543 G T PCDH17 Silent p.G621G 0.07 TCGA-55-1594-01 13 77847609 77847609 G C MYCBP2 Missense_Mutation p.Q277E 0.25 possibly_damaging(0.778) TCGA-55-1594-01 13 88328774 88328774 G T SLITRK5 Silent p.A377A 0.41 TCGA-55-1594-01 14 21699132 21699132 G A HNRNPC Missense_Mutation p.P114L 0.10 tolerated(0.65) benign(0.003) TCGA-55-1594-01 14 22446767 22446767 C G TRAV8-6 5'UTR 0.69 TCGA-55-1594-01 14 47566113 47566113 A T MDGA2 Missense_Mutation p.I380N 0.03 deleterious(0.02) possibly_damaging(0.648) TCGA-55-1594-01 14 57099793 57099793 C T TMEM260 Missense_Mutation p.S543F 0.30 deleterious(0.05) possibly_damaging(0.593) TCGA-55-1594-01 14 91691111 91691111 G T C14orf159 Silent p.L600L 0.65 TCGA-55-1594-01 14 93118640 93118640 C T RIN3 Nonsense_Mutation p.Q416* 0.24 TCGA-55-1594-01 15 28202874 28202874 C A OCA2 Missense_Mutation p.K548N 0.37 deleterious(0) probably_damaging(1) TCGA-55-1594-01 15 28211923 28211923 A T OCA2 Missense_Mutation p.C517S 0.30 tolerated(0.07) benign(0.12) TCGA-55-1594-01 15 41222861 41222861 A T DLL4 Silent p.P125P 0.31 TCGA-55-1594-01 15 42702827 42702827 C G CAPN3 Missense_Mutation p.I742M 0.31 tolerated(1) possibly_damaging(0.817) TCGA-55-1594-01 15 49048414 49048414 G A CEP152 Nonsense_Mutation p.Q1011* 0.34 TCGA-55-1594-01 15 54305729 54305729 G A UNC13C Missense_Mutation p.R210K 0.19 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-55-1594-01 15 55965800 55965800 G T PRTG Missense_Mutation p.P541T 0.32 deleterious(0.04) probably_damaging(0.973) TCGA-55-1594-01 15 64045267 64045267 C A HERC1 Missense_Mutation p.D598Y 0.14 probably_damaging(0.999) TCGA-55-1594-01 15 66797165 66797165 G - RPL4 5'UTR 0.37 TCGA-55-1594-01 15 75248342 75248342 C T RPP25 Missense_Mutation p.E195K 0.15 tolerated_low_confidence(0.12) benign(0.002) TCGA-55-1594-01 15 77348204 77348204 A T TSPAN3 Missense_Mutation p.F86Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-55-1594-01 15 79066595 79066595 C T ADAMTS7 Missense_Mutation p.E642K 0.13 deleterious(0) possibly_damaging(0.887) TCGA-55-1594-01 15 86311732 86311732 G T KLHL25 Missense_Mutation p.A437D 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-55-1594-01 16 15705448 15705448 C A KIAA0430 Splice_Site p.X1206_splice 0.37 TCGA-55-1594-01 16 16177395 16177397 AGA - ABCC1 In_Frame_Del p.K764del 0.16 TCGA-55-1594-01 16 19126881 19126881 A T ITPRIPL2 Silent p.A366A 0.20 TCGA-55-1594-01 16 28878061 28878061 G C SH2B1 Missense_Mutation p.D216H 0.42 deleterious(0.02) possibly_damaging(0.784) TCGA-55-1594-01 16 31408683 31408683 C T ITGAD Silent p.L47L 0.35 TCGA-55-1594-01 16 55806422 55806422 T A CES1P1 RNA 0.18 TCGA-55-1594-01 16 67338379 67338379 T C KCTD19 Silent p.T132T 0.38 TCGA-55-1594-01 16 81050942 81050942 C G CENPN Missense_Mutation p.H77D 0.41 deleterious(0.01) possibly_damaging(0.841) TCGA-55-1594-01 16 81069732 81069732 G T ATMIN Missense_Mutation p.C86F 0.18 deleterious(0) possibly_damaging(0.845) TCGA-55-1594-01 17 33329065 33329065 G A LIG3 Silent p.K872K 0.07 TCGA-55-1594-01 17 46628504 46628504 C T HOXB3 Missense_Mutation p.G163E 0.31 tolerated(0.32) benign(0.036) TCGA-55-1594-01 17 59988888 59988888 C G INTS2 Missense_Mutation p.G324A 0.44 deleterious(0.02) possibly_damaging(0.569) TCGA-55-1594-01 17 61869884 61869884 G A DDX42 Missense_Mutation p.D112N 0.14 deleterious(0.01) benign(0.058) TCGA-55-1594-01 17 66933233 66933233 C G ABCA8 Missense_Mutation p.D109H 0.38 deleterious(0) probably_damaging(0.961) TCGA-55-1594-01 17 72295931 72295931 T G DNAI2 Missense_Mutation p.Y267D 0.41 tolerated(0.11) benign(0.078) TCGA-55-1594-01 17 73689542 73689542 G C SAP30BP Missense_Mutation p.R96P 0.19 deleterious(0.01) benign(0.286) TCGA-55-1594-01 17 7578433 7578433 G C TP53 Nonsense_Mutation p.S166* 0.58 TCGA-55-1594-01 19 12939476 12939476 C T RTBDN Silent p.Q152Q 0.25 TCGA-55-1594-01 19 1483662 1483662 G A PCSK4 Nonsense_Mutation p.Q460* 0.62 TCGA-55-1594-01 19 17612097 17612097 C A SLC27A1 Missense_Mutation p.A551E 0.64 deleterious(0) probably_damaging(0.947) TCGA-55-1594-01 19 22154332 22154332 G T ZNF208 Silent p.P1168P 0.54 TCGA-55-1594-01 19 36967453 36967453 G A ZNF566 Nonsense_Mutation p.Q3* 0.15 TCGA-55-1594-01 19 39734751 39734751 A G IFNL3 Missense_Mutation p.L102P 0.27 deleterious(0) probably_damaging(1) TCGA-55-1594-01 19 41086690 41086690 G T SHKBP1 Missense_Mutation p.S231I 0.32 deleterious(0) probably_damaging(0.991) TCGA-55-1594-01 19 44351558 44351558 G C ZNF283 Missense_Mutation p.G269R 0.11 deleterious(0.04) probably_damaging(1) TCGA-55-1594-01 19 46216187 46216187 G C FBXO46 Missense_Mutation p.S189R 0.23 tolerated(0.12) benign(0.157) TCGA-55-1594-01 19 46305469 46305469 C A RSPH6A Silent p.L569L 0.50 TCGA-55-1594-01 19 49812634 49812634 A C SLC6A16 Missense_Mutation p.I304S 0.13 deleterious(0) probably_damaging(0.993) TCGA-55-1594-01 19 51581323 51581323 C T KLK14 Missense_Mutation p.V249I 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-55-1594-01 19 53208732 53208732 C G ZNF611 Missense_Mutation p.E526Q 0.35 tolerated(0.2) possibly_damaging(0.811) TCGA-55-1594-01 19 53576594 53576594 A C ZNF160 Intron 0.26 TCGA-55-1594-01 19 53589517 53589517 G T ZNF160 Missense_Mutation p.Q5K 0.30 deleterious(0) benign(0.001) TCGA-55-1594-01 19 54545619 54545619 G A VSTM1 Silent p.T133T 0.25 TCGA-55-1594-01 19 58858216 58858216 G C A1BG 3'UTR 0.60 TCGA-55-1594-01 1 103364245 103364245 G A COL11A1 Missense_Mutation p.L1409F 0.37 unknown(0) TCGA-55-1594-01 1 10459252 10459252 C T PGD Intron 0.32 TCGA-55-1594-01 1 117944871 117944871 A C MAN1A2 Silent p.A122A 0.21 TCGA-55-1594-01 1 152733114 152733114 C G KPRP Missense_Mutation p.I350M 0.25 deleterious(0.03) benign(0.337) TCGA-55-1594-01 1 155015885 155015885 G A DCST1 Missense_Mutation p.E358K 0.19 deleterious(0.01) possibly_damaging(0.716) TCGA-55-1594-01 1 160001137 160001137 C G PIGM Missense_Mutation p.W131C 0.27 deleterious(0) probably_damaging(1) TCGA-55-1594-01 1 171083381 171083381 A C FMO3 Missense_Mutation p.K354N 0.24 deleterious(0) probably_damaging(0.995) TCGA-55-1594-01 1 175049473 175049473 G T TNN Missense_Mutation p.G320V 0.22 deleterious(0) possibly_damaging(0.831) TCGA-55-1594-01 1 1920356 1920356 C T C1orf222 Missense_Mutation p.E33K 0.17 deleterious(0.01) possibly_damaging(0.801) TCGA-55-1594-01 1 220156531 220156531 C T EPRS Silent p.E1100E 0.46 TCGA-55-1594-01 1 220170591 220170591 C A EPRS Missense_Mutation p.V759F 0.40 tolerated(0.06) benign(0.094) TCGA-55-1594-01 1 233134066 233134066 T C PCNXL2 Missense_Mutation p.S1908G 0.16 tolerated(0.11) benign(0.008) TCGA-55-1594-01 1 237995884 237995884 G T RYR2 Missense_Mutation p.R4947S 0.47 benign(0.024) TCGA-55-1594-01 1 238090207 238090207 C - RP11-193H5.1 RNA 0.52 TCGA-55-1594-01 1 23885762 23885762 C T ID3 Silent p.R52R 0.17 TCGA-55-1594-01 1 247694783 247694783 G A OR2C3 3'UTR 0.40 TCGA-55-1594-01 1 32829545 32829545 G C TSSK3 Silent p.L165L 0.34 TCGA-55-1594-01 1 46511639 46511639 A G PIK3R3 Missense_Mutation p.F380L 0.19 deleterious(0) probably_damaging(0.925) TCGA-55-1594-01 1 55175634 55175634 G A MROH7 Missense_Mutation p.R1249K 0.18 tolerated(0.16) probably_damaging(0.998) TCGA-55-1594-01 1 70687463 70687463 G C SRSF11 Missense_Mutation p.Q48H 0.47 deleterious(0) unknown(0) TCGA-55-1594-01 1 75608822 75608822 T G LHX8 Missense_Mutation p.S137A 0.24 tolerated(1) benign(0.003) TCGA-55-1594-01 1 87045236 87045236 G C CLCA4 Missense_Mutation p.W774C 0.38 deleterious(0) probably_damaging(1) TCGA-55-1594-01 20 18297556 18297556 G C ZNF133 3'UTR 0.46 TCGA-55-1594-01 20 34288862 34288862 C G ROMO1 3'UTR 0.21 TCGA-55-1594-01 20 35827457 35827457 C G RPN2 Missense_Mutation p.S103C 0.30 deleterious(0.05) possibly_damaging(0.852) TCGA-55-1594-01 20 35827584 35827584 C G RPN2 Silent p.L145L 0.24 TCGA-55-1594-01 20 37356290 37356290 C A SLC32A1 Missense_Mutation p.P196T 0.30 tolerated(0.11) possibly_damaging(0.69) TCGA-55-1594-01 20 42831602 42831602 C A OSER1 Missense_Mutation p.G64W 0.21 tolerated(0.1) benign(0.083) TCGA-55-1594-01 20 56227472 56227472 G A PMEPA1 Silent p.L167L 0.16 TCGA-55-1594-01 20 60971600 60971600 G C CABLES2 Silent p.A137A 0.12 TCGA-55-1594-01 20 61981432 61981432 G T CHRNA4 Missense_Mutation p.P444H 0.74 tolerated_low_confidence(0.29) probably_damaging(0.944) TCGA-55-1594-01 21 46641940 46641940 C T ADARB1 Missense_Mutation p.S685F 0.53 tolerated(0.06) benign(0.158) TCGA-55-1594-01 22 17072821 17072821 G T CCT8L2 Missense_Mutation p.A207E 0.19 tolerated(0.73) benign(0.146) TCGA-55-1594-01 22 24087099 24087099 G A ZNF70 Nonsense_Mutation p.Q77* 0.21 TCGA-55-1594-01 22 26747039 26747039 G T SEZ6L Missense_Mutation p.G810V 0.13 deleterious(0) probably_damaging(0.986) TCGA-55-1594-01 22 28193194 28193194 G A MN1 Missense_Mutation p.S1113L 0.35 benign(0.036) TCGA-55-1594-01 22 29704500 29704500 C T GAS2L1 Silent p.S135S 0.12 TCGA-55-1594-01 22 33255454 33255454 G T TIMP3 3'UTR 0.58 TCGA-55-1594-01 22 37387544 37387544 A T TEX33 Missense_Mutation p.H241Q 0.35 deleterious(0.02) benign(0.402) TCGA-55-1594-01 2 108488100 108488100 A T RGPD4 Missense_Mutation p.T1214S 0.13 tolerated(0.21) benign(0.103) TCGA-55-1594-01 2 108626979 108626979 G A SLC5A7 Missense_Mutation p.D469N 0.12 tolerated(0.39) benign(0.001) TCGA-55-1594-01 2 119735488 119735488 A T MARCO Missense_Mutation p.E248V 0.20 deleterious(0) benign(0.257) TCGA-55-1594-01 2 128366435 128366435 G A MYO7B Silent p.Q932Q 0.48 TCGA-55-1594-01 2 133174758 133174758 A G GPR39 Missense_Mutation p.N48S 0.50 deleterious(0) probably_damaging(0.994) TCGA-55-1594-01 2 162036261 162036261 T A TANK Missense_Mutation p.L30I 0.10 tolerated(0.07) probably_damaging(0.997) TCGA-55-1594-01 2 163253285 163253285 C G KCNH7 Missense_Mutation p.E860Q 0.41 deleterious(0.01) probably_damaging(0.917) TCGA-55-1594-01 2 170148767 170148767 T A LRP2 Silent p.G255G 0.14 TCGA-55-1594-01 2 178402821 178402821 A G AGPS Silent p.Q625Q 0.07 TCGA-55-1594-01 2 186678562 186678562 G C FSIP2 Silent p.T6795T 0.73 TCGA-55-1594-01 2 201469469 201469469 A G AOX1 Silent p.R240R 0.20 TCGA-55-1594-01 2 201719419 201719419 C A CLK1 Splice_Site p.X423_splice 0.15 TCGA-55-1594-01 2 216214388 216214388 A T ATIC 3'UTR 0.16 TCGA-55-1594-01 2 231033728 231033728 G A SP110 3'UTR 0.51 TCGA-55-1594-01 2 241621963 241621963 G T AQP12B Missense_Mutation p.L98M 0.13 deleterious(0.04) probably_damaging(0.991) TCGA-55-1594-01 2 47709956 47709956 G C MSH2 Silent p.V891V 0.19 TCGA-55-1594-01 2 49217718 49217718 G - FSHR Frame_Shift_Del p.Q145Kfs*11 0.19 TCGA-55-1594-01 2 71631126 71631126 G A ZNF638 Missense_Mutation p.E986K 0.16 tolerated(0.11) benign(0.025) TCGA-55-1594-01 2 85577259 85577259 G A RETSAT Missense_Mutation p.L235F 0.14 tolerated(1) benign(0.001) TCGA-55-1594-01 2 86305044 86305044 C T POLR1A Missense_Mutation p.A440T 0.17 deleterious(0) probably_damaging(0.994) TCGA-55-1594-01 2 89292382 89292382 G C IGKV1-8 Missense_Mutation p.Q6E 0.14 deleterious(0.02) benign(0.07) TCGA-55-1594-01 2 99993096 99993102 TGAGGTA - EIF5B Splice_Site p.X614_splice 0.18 TCGA-55-1594-01 3 100100548 100100548 C A TOMM70A Silent p.T265T 0.42 TCGA-55-1594-01 3 108776234 108776234 G A MORC1 Silent p.I377I 0.37 TCGA-55-1594-01 3 113505180 113505180 A C ATP6V1A Silent p.P222P 0.15 TCGA-55-1594-01 3 126676372 126676372 G A CHCHD6 Missense_Mutation p.R227H 0.42 tolerated(0.66) benign(0.002) TCGA-55-1594-01 3 129308193 129308193 C T PLXND1 Splice_Site p.X496_splice 0.29 TCGA-55-1594-01 3 142539807 142539807 C T PCOLCE2 Missense_Mutation p.E344K 0.27 tolerated(0.36) possibly_damaging(0.867) TCGA-55-1594-01 3 194407563 194407563 C T FAM43A Missense_Mutation p.P3L 0.24 deleterious(0) possibly_damaging(0.873) TCGA-55-1594-01 3 196050777 196050777 G T TM4SF19 Missense_Mutation p.L181M 0.13 tolerated(0.06) probably_damaging(0.979) TCGA-55-1594-01 3 30769763 30769763 C T GADL1 Missense_Mutation p.E513K 0.28 deleterious(0) possibly_damaging(0.893) TCGA-55-1594-01 3 39374435 39374435 T G CCR8 Missense_Mutation p.L205V 0.51 deleterious(0.05) benign(0.327) TCGA-55-1594-01 3 44541963 44541963 G A ZNF852 Silent p.P102P 0.61 TCGA-55-1594-01 3 48626185 48626185 G C COL7A1 Missense_Mutation p.T826R 0.49 unknown(0) TCGA-55-1594-01 3 51425216 51425216 G A MANF Missense_Mutation p.E91K 0.33 deleterious(0) probably_damaging(0.999) TCGA-55-1594-01 3 51440599 51440599 C A VPRBP Missense_Mutation p.E1052D 0.58 tolerated_low_confidence(0.56) unknown(0) TCGA-55-1594-01 3 97868579 97868579 C A OR5H14 Missense_Mutation p.T117K 0.32 deleterious(0) benign(0.09) TCGA-55-1594-01 4 122828657 122828657 C A TRPC3 Missense_Mutation p.V620L 0.49 deleterious(0) probably_damaging(1) TCGA-55-1594-01 4 129789088 129789088 C G JADE1 Missense_Mutation p.F527L 0.38 tolerated(0.05) benign(0.411) TCGA-55-1594-01 4 183664320 183664320 T C TENM3 Intron 0.54 TCGA-55-1594-01 4 187628476 187628476 C A FAT1 Nonsense_Mutation p.E836* 0.52 TCGA-55-1594-01 4 367007 367007 G A ZNF141 Missense_Mutation p.G261S 0.52 deleterious(0.01) probably_damaging(0.991) TCGA-55-1594-01 4 47892633 47892633 T G NFXL1 Silent p.R514R 0.21 TCGA-55-1594-01 4 515659 515659 G C PIGG Missense_Mutation p.A515P 0.26 deleterious(0.01) benign(0.212) TCGA-55-1594-01 4 53740094 53740094 G C SCFD2 3'UTR 0.11 TCGA-55-1594-01 4 71701932 71701932 G C GRSF1 Missense_Mutation p.R153G 0.11 deleterious(0.01) probably_damaging(0.941) TCGA-55-1594-01 4 77247123 77247123 G C CCDC158 Missense_Mutation p.S1015C 0.24 deleterious(0.01) probably_damaging(0.994) TCGA-55-1594-01 5 101631628 101631628 G A SLCO4C1 Silent p.L113L 0.54 TCGA-55-1594-01 5 127599169 127599169 C A FBN2 Nonsense_Mutation p.E2714* 0.47 TCGA-55-1594-01 5 131630701 131630701 A T SLC22A4 Missense_Mutation p.E131V 0.61 deleterious(0) probably_damaging(0.988) TCGA-55-1594-01 5 140431299 140431299 G C PCDHB1 Missense_Mutation p.G82R 0.26 deleterious(0) probably_damaging(1) TCGA-55-1594-01 5 140503320 140503320 G A PCDHB4 Silent p.E580E 0.50 TCGA-55-1594-01 5 140553584 140553584 C T PCDHB7 Missense_Mutation p.P390S 0.56 deleterious_low_confidence(0) possibly_damaging(0.828) TCGA-55-1594-01 5 177570722 177570722 C T RMND5B Missense_Mutation p.A174V 0.31 deleterious(0) probably_damaging(0.983) TCGA-55-1594-01 5 26881693 26881693 T C CDH9 Missense_Mutation p.K641R 0.21 tolerated(0.07) probably_damaging(0.995) TCGA-55-1594-01 5 37727024 37727024 C G WDR70 Missense_Mutation p.S585C 0.30 deleterious(0) probably_damaging(0.976) TCGA-55-1594-01 5 38406296 38406296 G A EGFLAM Missense_Mutation p.D261N 0.39 deleterious_low_confidence(0.05) benign(0.12) TCGA-55-1594-01 5 79054629 79054629 A G CMYA5 Missense_Mutation p.T3722A 0.56 probably_damaging(0.949) TCGA-55-1594-01 6 109814589 109814589 C T AK9 Missense_Mutation p.D1907N 0.58 tolerated(0.09) probably_damaging(0.998) TCGA-55-1594-01 6 119345909 119345909 C T FAM184A Missense_Mutation p.E77K 0.60 deleterious(0) possibly_damaging(0.777) TCGA-55-1594-01 6 135515666 135515666 C T MYB Intron 0.54 TCGA-55-1594-01 6 170627094 170627094 C G FAM120B Missense_Mutation p.L206V 0.19 deleterious(0.01) benign(0.373) TCGA-55-1594-01 6 31833121 31833121 C T SLC44A4 Silent p.A577A 0.16 TCGA-55-1594-01 6 33632679 33632679 C A ITPR3 Missense_Mutation p.T394N 0.32 deleterious(0) possibly_damaging(0.868) TCGA-55-1594-01 6 43225669 43225669 C T TTBK1 Silent p.P327P 0.58 TCGA-55-1594-01 6 4996626 4996626 A T RPP40 Nonsense_Mutation p.Y196* 0.09 TCGA-55-1594-01 6 88218187 88218187 G A SLC35A1 Silent p.V208V 0.56 TCGA-55-1594-01 6 90062268 90062268 C A UBE2J1 Silent p.L7L 0.67 TCGA-55-1594-01 7 100179736 100179736 G T LRCH4 Silent p.V140V 0.30 TCGA-55-1594-01 7 123599915 123599915 G A SPAM1 Silent p.E474E 0.24 TCGA-55-1594-01 7 151818708 151818708 C T GALNT11 Silent p.V591V 0.28 TCGA-55-1594-01 7 39612310 39612310 A G YAE1D1 3'UTR 0.29 TCGA-55-1594-01 7 99171066 99171066 C T ZNF655 Silent p.F480F 0.34 TCGA-55-1594-01 8 12878691 12878691 T A KIAA1456 Missense_Mutation p.L168H 0.27 tolerated(0.6) possibly_damaging(0.717) TCGA-55-1594-01 8 12878692 12878692 C A KIAA1456 Silent p.L168L 0.26 TCGA-55-1594-01 8 20112537 20112537 G A LZTS1 Silent p.H52H 0.49 TCGA-55-1594-01 8 37692771 37692771 G A GPR124 Missense_Mutation p.R563K 0.31 tolerated(0.49) benign(0.011) TCGA-55-1594-01 8 38205058 38205058 C T WHSC1L1 Missense_Mutation p.R211H 0.23 tolerated(0.06) benign(0.069) TCGA-55-1594-01 8 72754901 72754901 C T MSC Missense_Mutation p.A206T 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-1594-01 8 75756265 75756265 G A PI15 Missense_Mutation p.C108Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-1594-01 8 75756266 75756266 C T PI15 Silent p.C108C 0.18 TCGA-55-1594-01 9 115171264 115171264 C G HSDL2 Missense_Mutation p.L120V 0.30 deleterious(0) probably_damaging(0.95) TCGA-55-1594-01 9 127693657 127693657 T C GOLGA1 Missense_Mutation p.D55G 0.64 deleterious(0) probably_damaging(0.928) TCGA-55-1594-01 9 130479208 130479208 T A TTC16 Missense_Mutation p.I35N 0.58 deleterious(0.01) probably_damaging(0.99) TCGA-55-1594-01 9 140327948 140327948 T C NOXA1 Missense_Mutation p.V318A 0.36 tolerated(0.1) benign(0.303) TCGA-55-1594-01 9 21971058 21971059 GG AGC CDKN2A Frame_Shift_Ins p.A100Gfs*20 0.66 TCGA-55-1594-01 9 35042966 35042966 C A C9orf131 Missense_Mutation p.L114M 0.55 deleterious(0.04) probably_damaging(0.992) TCGA-55-1594-01 9 35059557 35059557 G T VCP Missense_Mutation p.P646Q 0.46 deleterious(0.01) probably_damaging(1) TCGA-55-1594-01 9 36112407 36112407 A T RECK Missense_Mutation p.Q665L 0.41 deleterious(0) possibly_damaging(0.598) TCGA-55-1594-01 9 39361117 39361117 G - SPATA31A1 Frame_Shift_Del p.E1119Kfs*10 0.22 TCGA-55-1594-01 9 88661457 88661457 C G GOLM1 Missense_Mutation p.G132A 0.48 tolerated(0.06) benign(0.05) TCGA-55-1594-01 X 153593044 153593044 G A FLNA Silent p.D624D 0.40 TCGA-55-1594-01 X 27766598 27766598 C T DCAF8L2 Missense_Mutation p.A529V 0.80 deleterious(0.02) possibly_damaging(0.666) TCGA-55-1594-01 X 34962140 34962140 C T FAM47B Missense_Mutation p.R398C 0.72 tolerated(0.19) benign(0.015) TCGA-55-1594-01 X 46913983 46913983 C T JADE3 Missense_Mutation p.H466Y 0.52 tolerated(0.45) probably_damaging(0.943) TCGA-55-1594-01 X 5827175 5827175 T A NLGN4X Missense_Mutation p.D244V 0.26 deleterious(0) probably_damaging(0.997) TCGA-55-1594-01 X 5827176 5827176 C A NLGN4X Missense_Mutation p.D244Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-55-1594-01 X 99854065 99854065 C G TNMD Silent p.A210A 0.73 TCGA-55-1595-01 10 124377722 124377722 G T DMBT1 Missense_Mutation p.G1565V 0.19 deleterious(0) probably_damaging(1) TCGA-55-1595-01 10 135351254 135351254 G T CYP2E1 Splice_Site p.X386_splice 0.13 TCGA-55-1595-01 10 16526805 16526805 C G PTER Nonsense_Mutation p.S141* 0.15 TCGA-55-1595-01 10 17363044 17363044 A T ST8SIA6 Missense_Mutation p.W344R 0.24 deleterious(0) probably_damaging(1) TCGA-55-1595-01 10 17737220 17737220 T G STAM Missense_Mutation p.I236M 0.28 deleterious(0) possibly_damaging(0.886) TCGA-55-1595-01 10 29769644 29769644 G A SVIL Silent p.G1733G 0.09 TCGA-55-1595-01 10 34400356 34400356 C A PARD3 Missense_Mutation p.G1271V 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-1595-01 10 50856565 50856565 C A CHAT Silent p.R432R 0.15 TCGA-55-1595-01 10 54528214 54528214 C T MBL2 Missense_Mutation p.E144K 0.13 tolerated(0.24) benign(0.221) TCGA-55-1595-01 10 55782832 55782832 C A PCDH15 Missense_Mutation p.R782S 0.14 deleterious(0.02) benign(0.309) TCGA-55-1595-01 10 55996585 55996585 A T PCDH15 Missense_Mutation p.V328D 0.32 tolerated(0.12) probably_damaging(0.922) TCGA-55-1595-01 10 56089382 56089382 G C PCDH15 Missense_Mutation p.R227G 0.06 deleterious(0.01) possibly_damaging(0.844) TCGA-55-1595-01 10 58117829 58117829 C A ZWINT 3'UTR 0.28 TCGA-55-1595-01 10 64136074 64136074 C T ZNF365 Missense_Mutation p.S41L 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-55-1595-01 10 7708826 7708826 C A ITIH5 Silent p.G10G 0.22 TCGA-55-1595-01 10 93773549 93773549 T A BTAF1 Missense_Mutation p.S1479R 0.16 deleterious(0.02) probably_damaging(0.947) TCGA-55-1595-01 10 96064273 96064273 G A PLCE1 Silent p.E1831E 0.39 TCGA-55-1595-01 11 108115735 108115735 G C ATM Missense_Mutation p.A295P 0.50 deleterious(0) probably_damaging(1) TCGA-55-1595-01 11 108186770 108186770 G T ATM Missense_Mutation p.G2043V 0.38 deleterious(0) benign(0.421) TCGA-55-1595-01 11 119045416 119045416 C G NLRX1 Missense_Mutation p.C368W 0.19 deleterious(0) probably_damaging(0.998) TCGA-55-1595-01 11 120769268 120769268 C A GRIK4 Missense_Mutation p.L398I 0.23 tolerated(0.09) probably_damaging(0.985) TCGA-55-1595-01 11 32635190 32635190 C A CCDC73 Missense_Mutation p.D892Y 0.17 deleterious(0.01) benign(0.258) TCGA-55-1595-01 11 403755 403755 G T PKP3 Missense_Mutation p.R687S 0.15 tolerated(0.19) benign(0.146) TCGA-55-1595-01 11 4968238 4968238 G C OR51A4 Missense_Mutation p.I31M 0.17 deleterious(0) benign(0.378) TCGA-55-1595-01 11 4976851 4976851 G C OR51A2 Missense_Mutation p.I31M 0.22 deleterious(0) benign(0.378) TCGA-55-1595-01 11 5275544 5275544 T A HBG2 Missense_Mutation p.H98L 0.07 deleterious(0.01) benign(0.054) TCGA-55-1595-01 11 5443842 5443842 C A OR51Q1 Missense_Mutation p.L138I 0.48 deleterious(0) possibly_damaging(0.493) TCGA-55-1595-01 11 55340015 55340015 G T OR4C16 Missense_Mutation p.V138F 0.23 deleterious(0.01) probably_damaging(0.952) TCGA-55-1595-01 11 59211048 59211048 C A OR5A1 Missense_Mutation p.P136H 0.42 deleterious(0.02) benign(0.139) TCGA-55-1595-01 11 59211049 59211049 C A OR5A1 Silent p.P136P 0.43 TCGA-55-1595-01 11 65618622 65618622 G C SNX32 Missense_Mutation p.A234P 0.21 deleterious(0.01) benign(0.1) TCGA-55-1595-01 11 66358704 66358704 C A CCDC87 Missense_Mutation p.D595Y 0.81 deleterious(0) possibly_damaging(0.819) TCGA-55-1595-01 11 66620019 66620019 G A PC Silent p.D572D 0.17 TCGA-55-1595-01 11 85396370 85396370 G A CCDC89 Silent p.V268V 0.19 TCGA-55-1595-01 11 94911953 94911953 C T SESN3 Missense_Mutation p.R326Q 0.15 tolerated(0.34) benign(0.142) TCGA-55-1595-01 12 113333615 113333615 G A RPH3A Missense_Mutation p.A631T 0.22 deleterious(0.02) benign(0.188) TCGA-55-1595-01 12 11546368 11546368 G T PRB2 Missense_Mutation p.P215H 0.51 tolerated(0.62) unknown(0) TCGA-55-1595-01 12 120595817 120595817 C A GCN1L1 Missense_Mutation p.A975S 0.51 probably_damaging(0.997) TCGA-55-1595-01 12 130839197 130839197 G T PIWIL1 Missense_Mutation p.C387F 0.44 deleterious(0) probably_damaging(0.965) TCGA-55-1595-01 12 132682499 132682499 C A GALNT9 Silent p.V135V 0.51 TCGA-55-1595-01 12 18435041 18435041 C A PIK3C2G Missense_Mutation p.P9Q 0.38 tolerated_low_confidence(0.32) benign(0.007) TCGA-55-1595-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.61 deleterious(0.04) probably_damaging(0.993) TCGA-55-1595-01 12 26868353 26868353 G A ITPR2 Missense_Mutation p.A245V 0.08 deleterious(0.04) probably_damaging(0.996) TCGA-55-1595-01 12 27070649 27070649 C A ASUN Missense_Mutation p.G303C 0.42 tolerated(0.08) possibly_damaging(0.489) TCGA-55-1595-01 12 46591784 46591784 G C SLC38A1 Silent p.T394T 0.13 TCGA-55-1595-01 12 49171215 49171215 G A ADCY6 Missense_Mutation p.A409V 0.57 deleterious(0.03) possibly_damaging(0.777) TCGA-55-1595-01 12 49171216 49171216 C A ADCY6 Missense_Mutation p.A409S 0.58 deleterious(0.01) probably_damaging(0.955) TCGA-55-1595-01 12 50344932 50344932 A C AQP2 Missense_Mutation p.I107L 0.15 tolerated(0.34) benign(0.002) TCGA-55-1595-01 12 50344945 50344945 A T AQP2 Missense_Mutation p.D111V 0.13 tolerated(0.09) benign(0.107) TCGA-55-1595-01 12 55039440 55039440 C T DCD Missense_Mutation p.G50E 0.62 tolerated_low_confidence(0.35) benign(0) TCGA-55-1595-01 12 55615680 55615680 G T OR10A7 Missense_Mutation p.G291V 0.21 deleterious(0) benign(0.033) TCGA-55-1595-01 12 57457866 57457866 G A TMEM194A Nonsense_Mutation p.Q248* 0.13 TCGA-55-1595-01 12 57648891 57648891 C A R3HDM2 Missense_Mutation p.G866W 0.12 deleterious(0) possibly_damaging(0.855) TCGA-55-1595-01 12 9094325 9094325 A T M6PR 3'UTR 0.18 TCGA-55-1595-01 12 9985974 9985974 T C KLRF1 Missense_Mutation p.L87P 0.49 tolerated(0.31) benign(0.002) TCGA-55-1595-01 13 109535429 109535429 C A MYO16 Missense_Mutation p.S461Y 0.52 deleterious(0.01) benign(0.227) TCGA-55-1595-01 13 111368110 111368110 G T ING1 Missense_Mutation p.R107L 0.42 tolerated_low_confidence(0.08) benign(0.001) TCGA-55-1595-01 13 29598927 29598927 G C MTUS2 Missense_Mutation p.S41T 0.42 tolerated(0.06) possibly_damaging(0.54) TCGA-55-1595-01 14 100795911 100795911 T G SLC25A47 Missense_Mutation p.F286V 0.18 deleterious(0.02) probably_damaging(1) TCGA-55-1595-01 14 100795933 100795933 T G SLC25A47 Missense_Mutation p.F293C 0.21 deleterious(0) probably_damaging(1) TCGA-55-1595-01 14 102027869 102027869 A G DIO3 Silent p.G12G 0.19 TCGA-55-1595-01 14 102717219 102717219 G A MOK Missense_Mutation p.L174F 0.23 deleterious(0) probably_damaging(1) TCGA-55-1595-01 14 105716678 105716678 A G BTBD6 Missense_Mutation p.Y376C 0.22 deleterious(0) possibly_damaging(0.451) TCGA-55-1595-01 14 106963072 106963072 G T IGHV1-45 Silent p.I70I 0.22 TCGA-55-1595-01 14 21868347 21868347 C A CHD8 Nonsense_Mutation p.E1564* 0.15 TCGA-55-1595-01 14 21955827 21955827 G T TOX4 Missense_Mutation p.G98V 0.17 tolerated(0.22) benign(0.014) TCGA-55-1595-01 14 22133769 22133769 G T OR4E2 Missense_Mutation p.G158V 0.18 tolerated(1) benign(0) TCGA-55-1595-01 14 22133770 22133770 G T OR4E2 Silent p.G158G 0.18 TCGA-55-1595-01 14 22251467 22251467 C A TRAV7 Missense_Mutation p.S28R 0.27 tolerated(0.06) benign(0.229) TCGA-55-1595-01 14 23002508 23002508 A T TRAJ10 Silent p.%3D 0.15 TCGA-55-1595-01 14 53327080 53327080 C T FERMT2 Missense_Mutation p.G576D 0.11 deleterious(0) benign(0.202) TCGA-55-1595-01 14 55004894 55004894 T G CGRRF1 Silent p.V264V 0.19 TCGA-55-1595-01 14 55004904 55004904 G T CGRRF1 Nonsense_Mutation p.E268* 0.21 TCGA-55-1595-01 14 74999213 74999213 C G LTBP2 Missense_Mutation p.A635P 0.31 deleterious(0) possibly_damaging(0.849) TCGA-55-1595-01 15 101970268 101970268 C A PCSK6 Missense_Mutation p.D219Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-55-1595-01 15 23811332 23811332 C A MKRN3 Missense_Mutation p.P135T 0.32 tolerated(0.19) benign(0.01) TCGA-55-1595-01 15 29409385 29409385 G T APBA2 3'UTR 0.19 TCGA-55-1595-01 15 45394000 45394000 C A DUOX2 Missense_Mutation p.G948C 0.19 tolerated(0.06) benign(0.319) TCGA-55-1595-01 15 52539167 52539167 C A MYO5C Silent p.T642T 0.25 TCGA-55-1595-01 15 52902417 52902417 T C FAM214A Missense_Mutation p.N232D 0.17 tolerated(0.09) benign(0.369) TCGA-55-1595-01 15 54307398 54307398 G T UNC13C Missense_Mutation p.L766F 0.39 deleterious_low_confidence(0) benign(0.282) TCGA-55-1595-01 15 67358475 67358475 C T SMAD3 5'UTR 0.78 TCGA-55-1595-01 15 75942210 75942210 C G SNX33 Missense_Mutation p.P256R 0.41 deleterious(0) probably_damaging(0.999) TCGA-55-1595-01 15 88476321 88476321 T A NTRK3 Missense_Mutation p.Y604F 0.16 tolerated(0.27) possibly_damaging(0.893) TCGA-55-1595-01 15 90770876 90770876 T C SEMA4B Splice_Site p.X592_splice 0.21 TCGA-55-1595-01 16 1260867 1260867 G T CACNA1H Silent p.L1373L 0.17 TCGA-55-1595-01 16 16284195 16284195 C A ABCC6 Silent p.R487R 0.16 TCGA-55-1595-01 16 20043689 20043689 G T GPR139 Missense_Mutation p.R144S 0.30 deleterious(0) probably_damaging(0.997) TCGA-55-1595-01 16 20442600 20442600 G T ACSM5 Missense_Mutation p.R422L 0.12 deleterious(0) benign(0.287) TCGA-55-1595-01 16 30198429 30198429 T C CORO1A Missense_Mutation p.V174A 0.14 tolerated(0.26) benign(0.201) TCGA-55-1595-01 16 31374029 31374029 G C ITGAX Missense_Mutation p.Q438H 0.37 deleterious(0.03) benign(0.002) TCGA-55-1595-01 16 31427913 31427913 G T ITGAD Silent p.V815V 0.30 TCGA-55-1595-01 16 49670342 49670342 C A ZNF423 Silent p.R907R 0.12 TCGA-55-1595-01 16 5057380 5057380 C T SEC14L5 Missense_Mutation p.P489S 0.17 deleterious(0) probably_damaging(1) TCGA-55-1595-01 16 5075303 5075303 C T NAGPA 3'UTR 0.14 TCGA-55-1595-01 16 61854900 61854900 C A CDH8 Missense_Mutation p.G318V 0.13 deleterious(0) probably_damaging(1) TCGA-55-1595-01 16 67918040 67918040 A T EDC4 Missense_Mutation p.S1399C 0.30 deleterious_low_confidence(0.03) benign(0.338) TCGA-55-1595-01 16 72184552 72184552 G A PMFBP1 Silent p.C197C 0.19 TCGA-55-1595-01 16 76482785 76482785 G A CNTNAP4 Silent p.V263V 0.24 TCGA-55-1595-01 16 80642134 80642134 T A CDYL2 Splice_Site p.X407_splice 0.40 TCGA-55-1595-01 16 855579 855579 G T PRR25 Missense_Mutation p.R46L 0.17 tolerated_low_confidence(0.42) benign(0.002) TCGA-55-1595-01 16 87742994 87742994 C T KLHDC4 Missense_Mutation p.G442R 0.33 deleterious(0) probably_damaging(0.989) TCGA-55-1595-01 16 88644074 88644074 G A ZC3H18 Silent p.E181E 0.18 TCGA-55-1595-01 17 10415291 10415291 C A MYH1 Silent p.V427V 0.19 TCGA-55-1595-01 17 14248528 14248528 C T HS3ST3B1 Silent p.P246P 0.17 TCGA-55-1595-01 17 40371852 40371852 C A STAT5B Missense_Mutation p.G187C 0.10 tolerated(0.06) benign(0.332) TCGA-55-1595-01 17 42854901 42854901 G T ADAM11 Silent p.R611R 0.48 TCGA-55-1595-01 17 45891129 45891129 C A OSBPL7 Missense_Mutation p.A475S 0.22 tolerated(1) benign(0.002) TCGA-55-1595-01 17 54431392 54431392 C T ANKFN1 Nonsense_Mutation p.R199* 0.10 TCGA-55-1595-01 17 56599238 56599238 A C SEPT4 Intron 0.13 TCGA-55-1595-01 17 649339 649339 T C GEMIN4 Silent p.P648P 0.22 TCGA-55-1595-01 17 67013932 67013932 T C ABCA9 Splice_Site p.X923_splice 0.16 TCGA-55-1595-01 17 70643679 70643679 T C SLC39A11 3'UTR 0.19 TCGA-55-1595-01 17 71165565 71165565 C T SSTR2 Missense_Mutation p.P36L 0.08 tolerated(0.2) benign(0) TCGA-55-1595-01 17 71348764 71348764 C A SDK2 Missense_Mutation p.W1869L 0.07 deleterious(0) probably_damaging(1) TCGA-55-1595-01 17 72368677 72368677 G T GPR142 Nonsense_Mutation p.E443* 0.26 TCGA-55-1595-01 17 7297499 7297499 G A TMEM256-PLSCR3 5'UTR 0.29 TCGA-55-1595-01 17 73945907 73945907 T C ACOX1 Missense_Mutation p.D457G 0.21 tolerated(0.2) benign(0) TCGA-55-1595-01 17 74936922 74936922 A G MGAT5B Missense_Mutation p.R623G 0.12 tolerated(0.05) benign(0.005) TCGA-55-1595-01 17 76548888 76548888 C A DNAH17 Splice_Site p.X727_splice 0.16 TCGA-55-1595-01 17 7984605 7984605 G T AC129492.6 3'UTR 0.36 TCGA-55-1595-01 17 79880889 79880889 C G MAFG Missense_Mutation p.E27D 0.55 tolerated(1) benign(0.006) TCGA-55-1595-01 17 8784027 8784027 C T PIK3R5 Missense_Mutation p.A858T 0.22 tolerated(0.29) benign(0.007) TCGA-55-1595-01 18 19997210 19997210 G T CTAGE1 Missense_Mutation p.Q189K 0.80 tolerated(0.15) possibly_damaging(0.485) TCGA-55-1595-01 18 23612426 23612426 T C SS18 Silent p.G389G 0.04 TCGA-55-1595-01 18 30846968 30846968 C A CCDC178 Missense_Mutation p.A441S 0.87 deleterious(0.02) benign(0.033) TCGA-55-1595-01 18 33706906 33706906 T A SLC39A6 Missense_Mutation p.H22L 0.91 tolerated(0.12) benign(0.046) TCGA-55-1595-01 18 50683801 50683801 G A DCC Missense_Mutation p.R446H 0.20 deleterious(0.01) benign(0.335) TCGA-55-1595-01 18 54361912 54361912 G C WDR7 Silent p.L343L 0.13 TCGA-55-1595-01 18 70205518 70205518 G T CBLN2 Missense_Mutation p.L190M 0.48 deleterious(0.01) probably_damaging(0.965) TCGA-55-1595-01 19 10116471 10116471 C T COL5A3 Splice_Site p.X146_splice 0.14 TCGA-55-1595-01 19 15740149 15740149 G T CYP4F8 RNA 0.36 TCGA-55-1595-01 19 17985510 17985510 C T SLC5A5 Silent p.T171T 0.10 TCGA-55-1595-01 19 22363115 22363115 C A ZNF676 Missense_Mutation p.K468N 0.14 deleterious(0.05) possibly_damaging(0.864) TCGA-55-1595-01 19 38579466 38579466 A G SIPA1L3 Missense_Mutation p.Y547C 0.18 deleterious(0) probably_damaging(0.911) TCGA-55-1595-01 19 38996576 38996576 A T RYR1 Missense_Mutation p.Q2844L 0.30 benign(0.03) TCGA-55-1595-01 19 3961422 3961422 T C DAPK3 Intron 0.13 TCGA-55-1595-01 19 41078081 41078081 G A SPTBN4 Silent p.K2492K 0.15 TCGA-55-1595-01 19 41313712 41313712 A C EGLN2 Splice_Site p.X390_splice 0.35 TCGA-55-1595-01 19 43773657 43773657 A G PSG9 5'UTR 0.41 TCGA-55-1595-01 19 44891556 44891556 C G ZNF285 Missense_Mutation p.G284A 0.19 tolerated(0.1) benign(0.011) TCGA-55-1595-01 19 44932748 44932748 G A ZNF229 Silent p.G736G 0.35 TCGA-55-1595-01 19 4550923 4550923 A T SEMA6B Missense_Mutation p.C337S 0.15 deleterious(0) probably_damaging(0.999) TCGA-55-1595-01 19 48342705 48342705 C A CRX Silent p.P127P 0.16 TCGA-55-1595-01 19 49920427 49920427 G - CCDC155 Frame_Shift_Del p.E485Nfs*9 0.35 TCGA-55-1595-01 19 50961849 50961849 G C MYBPC2 Missense_Mutation p.E782Q 0.20 tolerated(0.06) benign(0.133) TCGA-55-1595-01 19 51453337 51453337 G T KLK5 Missense_Mutation p.H37N 0.16 tolerated(1) benign(0) TCGA-55-1595-01 19 54233090 54233090 G A MIR518A1 5'Flank 0.15 TCGA-55-1595-01 19 54745979 54745979 G T LILRA6 Missense_Mutation p.A93E 0.11 deleterious(0) probably_damaging(0.998) TCGA-55-1595-01 19 54818980 54818980 C A LILRA5 Intron 0.20 TCGA-55-1595-01 19 55144512 55144512 C A LILRB1 Missense_Mutation p.T335K 0.30 tolerated(0.08) benign(0.02) TCGA-55-1595-01 19 56370337 56370337 G T NLRP4 Missense_Mutation p.E526D 0.15 deleterious(0.02) benign(0.042) TCGA-55-1595-01 19 56544123 56544123 C A NLRP5 Missense_Mutation p.P808H 0.26 deleterious(0.03) benign(0.087) TCGA-55-1595-01 19 9067777 9067777 C - MUC16 Frame_Shift_Del p.A6557Hfs*36 0.32 TCGA-55-1595-01 1 103544335 103544335 C T COL11A1 Missense_Mutation p.G123S 0.13 probably_damaging(0.999) TCGA-55-1595-01 1 10702979 10702979 C G CASZ1 Missense_Mutation p.E1367Q 0.37 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-55-1595-01 1 107867518 107867518 G T NTNG1 Silent p.A287A 0.13 TCGA-55-1595-01 1 119964814 119964814 G T HSD3B2 Missense_Mutation p.W230C 0.25 deleterious(0) probably_damaging(0.999) TCGA-55-1595-01 1 12907355 12907355 C T HNRNPCL1 Missense_Mutation p.G263E 0.20 tolerated(0.05) possibly_damaging(0.58) TCGA-55-1595-01 1 147091685 147091685 G T BCL9 Missense_Mutation p.G575V 0.59 tolerated(0.3) benign(0.041) TCGA-55-1595-01 1 149916177 149916177 C - OTUD7B Frame_Shift_Del p.G704Afs*124 0.22 TCGA-55-1595-01 1 150255696 150255696 G T C1orf51 Missense_Mutation p.V7F 0.12 tolerated_low_confidence(0.1) unknown(0) TCGA-55-1595-01 1 151261159 151261159 C T ZNF687 Silent p.H757H 0.16 TCGA-55-1595-01 1 158617426 158617426 G T SPTA1 Missense_Mutation p.L1267M 0.11 deleterious(0) probably_damaging(1) TCGA-55-1595-01 1 158645963 158645963 G T SPTA1 Silent p.T360T 0.61 TCGA-55-1595-01 1 159176052 159176052 A T DARC Missense_Mutation p.T277S 0.13 tolerated(0.4) benign(0.028) TCGA-55-1595-01 1 160390262 160390262 C T VANGL2 Missense_Mutation p.P288S 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-55-1595-01 1 160580535 160580535 G T SLAMF1 3'UTR 0.14 TCGA-55-1595-01 1 171535858 171535858 G T PRRC2C Missense_Mutation p.S2143I 0.57 possibly_damaging(0.86) TCGA-55-1595-01 1 171810840 171810840 G A DNM3 Missense_Mutation p.R15H 0.12 deleterious(0) possibly_damaging(0.86) TCGA-55-1595-01 1 176563988 176563988 G T PAPPA2 Silent p.G416G 0.09 TCGA-55-1595-01 1 176708890 176708890 C G PAPPA2 Missense_Mutation p.H1309Q 0.09 deleterious(0.04) possibly_damaging(0.794) TCGA-55-1595-01 1 177030299 177030299 G T ASTN1 Missense_Mutation p.P129Q 0.13 tolerated_low_confidence(0.72) benign(0.007) TCGA-55-1595-01 1 178389684 178389684 G T RASAL2 Missense_Mutation p.R201S 0.43 deleterious(0.01) probably_damaging(0.995) TCGA-55-1595-01 1 183775522 183775522 A T RGL1 Missense_Mutation p.D49V 0.08 deleterious(0) probably_damaging(0.983) TCGA-55-1595-01 1 207297525 207297525 A T C4BPA Nonsense_Mutation p.K174* 0.14 TCGA-55-1595-01 1 215345436 215345436 T C KCNK2 Missense_Mutation p.F245L 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-55-1595-01 1 215940026 215940026 C T USH2A Missense_Mutation p.E3682K 0.15 benign(0.066) TCGA-55-1595-01 1 216370054 216370054 G A USH2A Silent p.F1364F 0.12 TCGA-55-1595-01 1 216420069 216420069 C T USH2A Silent p.L889L 0.19 TCGA-55-1595-01 1 216420340 216420340 G C USH2A Missense_Mutation p.T799R 0.10 benign(0.008) TCGA-55-1595-01 1 222717353 222717353 C A HHIPL2 Missense_Mutation p.R167L 0.57 tolerated(0.09) benign(0.019) TCGA-55-1595-01 1 240371461 240371461 G T FMN2 Missense_Mutation p.G1117C 0.56 unknown(0) TCGA-55-1595-01 1 247471885 247471885 G C ZNF496 Missense_Mutation p.P300A 0.23 tolerated(0.21) benign(0.035) TCGA-55-1595-01 1 248201720 248201720 G T OR2L2 Missense_Mutation p.D51Y 0.20 deleterious(0) probably_damaging(0.98) TCGA-55-1595-01 1 248512769 248512769 C A OR14C36 Missense_Mutation p.D231E 0.08 tolerated(0.61) benign(0.013) TCGA-55-1595-01 1 248845247 248845247 C T OR14I1 Missense_Mutation p.R120H 0.43 deleterious(0.01) benign(0.165) TCGA-55-1595-01 1 41948221 41948221 C A EDN2 Missense_Mutation p.R87L 0.29 deleterious(0) probably_damaging(0.999) TCGA-55-1595-01 1 47489533 47489533 A T CYP4X1 Missense_Mutation p.Y15F 0.26 tolerated(0.29) possibly_damaging(0.529) TCGA-55-1595-01 1 57406675 57406675 C A C8B Missense_Mutation p.K415N 0.29 tolerated(0.2) benign(0.013) TCGA-55-1595-01 1 62676875 62676875 T A L1TD1 Missense_Mutation p.V810D 0.33 deleterious(0) probably_damaging(0.987) TCGA-55-1595-01 1 62740108 62740108 C A KANK4 Missense_Mutation p.R223L 0.23 tolerated(0.24) benign(0.013) TCGA-55-1595-01 1 70877246 70877246 G T CTH Missense_Mutation p.G50W 0.27 deleterious(0.02) benign(0.001) TCGA-55-1595-01 1 76262729 76262729 C G MSH4 Missense_Mutation p.S20W 0.08 deleterious_low_confidence(0.01) benign(0.342) TCGA-55-1595-01 1 76343982 76343982 G T MSH4 Nonsense_Mutation p.E507* 0.14 TCGA-55-1595-01 1 86590593 86590594 - A COL24A1 Frame_Shift_Ins p.E476* 0.17 TCGA-55-1595-01 1 87036875 87036875 T A CLCA4 Missense_Mutation p.V433D 0.36 deleterious(0) probably_damaging(0.956) TCGA-55-1595-01 1 89598950 89598950 G T GBP7 Missense_Mutation p.H551Q 0.17 tolerated(0.23) benign(0.34) TCGA-55-1595-01 20 18535781 18535781 A C SEC23B Silent p.P726P 0.23 TCGA-55-1595-01 20 30785235 30785235 G T PLAGL2 Missense_Mutation p.L171M 0.16 deleterious(0) probably_damaging(0.995) TCGA-55-1595-01 20 34207127 34207127 C A SPAG4 Silent p.I268I 0.18 TCGA-55-1595-01 20 36989359 36989359 T A LBP Missense_Mutation p.I197N 0.14 deleterious(0) probably_damaging(0.992) TCGA-55-1595-01 20 50051770 50051770 C A NFATC2 Missense_Mutation p.G663W 0.19 deleterious(0) probably_damaging(1) TCGA-55-1595-01 20 57876637 57876637 C A EDN3 Missense_Mutation p.S75R 0.10 tolerated(0.17) benign(0.038) TCGA-55-1595-01 21 10862986 10862986 C T IGHV1OR21-1 Silent p.S94S 0.08 TCGA-55-1595-01 21 11038985 11038985 G T BAGE2 RNA 0.11 TCGA-55-1595-01 21 22804584 22804584 G T NCAM2 Missense_Mutation p.R546L 0.32 tolerated(0.09) benign(0.02) TCGA-55-1595-01 21 31062202 31062202 G T GRIK1 Missense_Mutation p.H130Q 0.34 deleterious(0) probably_damaging(0.953) TCGA-55-1595-01 21 31913933 31913933 C A KRTAP19-6 3'UTR 0.21 TCGA-55-1595-01 21 31913955 31913955 G T KRTAP19-6 3'UTR 0.19 TCGA-55-1595-01 21 32638890 32638890 C A TIAM1 Missense_Mutation p.R133S 0.33 tolerated_low_confidence(0.4) benign(0.05) TCGA-55-1595-01 21 37833634 37833634 G T CLDN14 Silent p.L120L 0.20 TCGA-55-1595-01 21 43504227 43504227 C A UMODL1 Missense_Mutation p.P118H 0.30 deleterious(0.01) benign(0.029) TCGA-55-1595-01 21 44524456 44524456 G A U2AF1 Missense_Mutation p.S34F 0.34 deleterious(0) possibly_damaging(0.835) TCGA-55-1595-01 22 16287590 16287590 C - POTEH Frame_Shift_Del p.G99Afs*30 0.16 TCGA-55-1595-01 22 17443596 17443596 G T GAB4 3'UTR 0.29 TCGA-55-1595-01 22 27012292 27012292 C A CRYBB1 5'UTR 0.45 TCGA-55-1595-01 22 33265006 33265006 G C SYN3 Missense_Mutation p.P190A 0.25 deleterious(0.02) unknown(0) TCGA-55-1595-01 22 40066212 40066212 G C CACNA1I Missense_Mutation p.R1455P 0.29 deleterious(0.01) possibly_damaging(0.453) TCGA-55-1595-01 22 51117202 51117202 C T SHANK3 Missense_Mutation p.P152S 0.47 probably_damaging(0.949) TCGA-55-1595-01 22 51117203 51117203 C T SHANK3 Missense_Mutation p.P152L 0.50 probably_damaging(0.995) TCGA-55-1595-01 2 130877630 130877630 G T POTEF Silent p.P153P 0.09 TCGA-55-1595-01 2 130877801 130877801 G A POTEF Silent p.N96N 0.18 TCGA-55-1595-01 2 149542324 149542324 A T EPC2 Missense_Mutation p.H702L 0.28 tolerated(0.73) benign(0.006) TCGA-55-1595-01 2 17696883 17696883 C A RAD51AP2 Missense_Mutation p.G934C 0.14 deleterious(0) possibly_damaging(0.613) TCGA-55-1595-01 2 17697105 17697105 C A RAD51AP2 Nonsense_Mutation p.E860* 0.27 TCGA-55-1595-01 2 179424886 179424886 G C TTN Missense_Mutation p.P28658R 0.25 TCGA-55-1595-01 2 179449393 179449393 T C TTN Intron 0.07 TCGA-55-1595-01 2 179606461 179606461 C A TTN Missense_Mutation p.M3833I 0.22 TCGA-55-1595-01 2 196737076 196737076 C A DNAH7 Missense_Mutation p.L2177F 0.29 deleterious(0.01) probably_damaging(0.927) TCGA-55-1595-01 2 198571774 198571774 G T MARS2 Nonsense_Mutation p.G549* 0.29 TCGA-55-1595-01 2 206037038 206037038 C G PARD3B Missense_Mutation p.S513C 0.15 deleterious(0) probably_damaging(1) TCGA-55-1595-01 2 220239586 220239586 G A DNPEP Silent p.T466T 0.27 TCGA-55-1595-01 2 230744731 230744731 C G TRIP12 Missense_Mutation p.G22A 0.26 tolerated_low_confidence(0.45) benign(0.005) TCGA-55-1595-01 2 31215762 31215762 G T GALNT14 Intron 0.55 TCGA-55-1595-01 2 33590570 33590570 G A LTBP1 Missense_Mutation p.D1571N 0.20 tolerated(0.06) probably_damaging(0.924) TCGA-55-1595-01 2 79349206 79349206 C A REG1A Silent p.G92G 0.19 TCGA-55-1595-01 2 79384709 79384709 G A REG3A Missense_Mutation p.S150L 0.52 tolerated(0.06) probably_damaging(0.956) TCGA-55-1595-01 2 80773162 80773162 C A CTNNA2 Nonsense_Mutation p.S505* 0.18 TCGA-55-1595-01 2 86992312 86992312 A G RMND5A Silent p.Q228Q 0.50 TCGA-55-1595-01 2 90260091 90260091 C A IGKV1D-8 Missense_Mutation p.A65D 0.31 deleterious(0) benign(0.141) TCGA-55-1595-01 2 95941982 95941982 G T PROM2 Missense_Mutation p.V169L 0.47 tolerated(0.21) benign(0.046) TCGA-55-1595-01 3 108780903 108780903 C A MORC1 Nonsense_Mutation p.E300* 0.40 TCGA-55-1595-01 3 108829607 108829607 T A MORC1 Missense_Mutation p.D48V 0.50 deleterious(0) probably_damaging(0.998) TCGA-55-1595-01 3 111325760 111325760 G A CD96 Intron 0.29 TCGA-55-1595-01 3 129155735 129155735 C A MBD4 Missense_Mutation p.R251M 0.34 tolerated(0.06) possibly_damaging(0.625) TCGA-55-1595-01 3 14861865 14861865 C T FGD5 Silent p.P429P 0.28 TCGA-55-1595-01 3 154884756 154884756 G T MME Missense_Mutation p.G576W 0.30 deleterious(0) probably_damaging(1) TCGA-55-1595-01 3 164741538 164741538 C A SI Missense_Mutation p.E973D 0.33 tolerated(0.21) benign(0.008) TCGA-55-1595-01 3 173322495 173322495 G C NLGN1 Missense_Mutation p.C36S 0.36 tolerated_low_confidence(0.67) benign(0) TCGA-55-1595-01 3 173997429 173997429 T A NLGN1 Missense_Mutation p.F546L 0.19 deleterious(0.04) probably_damaging(0.963) TCGA-55-1595-01 3 186953983 186953983 A T MASP1 Missense_Mutation p.L559Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-55-1595-01 3 28454767 28454767 A T ZCWPW2 Missense_Mutation p.N70Y 0.28 deleterious(0.01) possibly_damaging(0.447) TCGA-55-1595-01 3 3888136 3888136 A G LRRN1 Missense_Mutation p.Q604R 0.32 tolerated(0.18) benign(0.002) TCGA-55-1595-01 3 48667389 48667389 G A SLC26A6 Missense_Mutation p.T482M 0.10 deleterious(0.04) benign(0.003) TCGA-55-1595-01 3 5220495 5220495 C T ARL8B 3'UTR 0.36 TCGA-55-1595-01 3 56675561 56675561 T A FAM208A Missense_Mutation p.H812L 0.24 tolerated(0.3) benign(0.098) TCGA-55-1595-01 3 86115952 86115952 G C CADM2 3'Flank 0.25 TCGA-55-1595-01 3 88040204 88040204 T A HTR1F Missense_Mutation p.V102D 0.12 deleterious(0.01) probably_damaging(0.954) TCGA-55-1595-01 3 97167531 97167531 C A EPHA6 Nonsense_Mutation p.Y617* 0.14 TCGA-55-1595-01 3 97806174 97806174 A T OR5AC2 Missense_Mutation p.N53I 0.57 tolerated(0.08) benign(0.001) TCGA-55-1595-01 4 104510898 104510898 C A TACR3 Missense_Mutation p.A447S 0.16 tolerated(0.22) benign(0.024) TCGA-55-1595-01 4 109822318 109822318 C A COL25A1 Missense_Mutation p.G264V 0.10 deleterious(0) possibly_damaging(0.874) TCGA-55-1595-01 4 115998013 115998013 A G NDST4 Silent p.Y60Y 0.37 TCGA-55-1595-01 4 123179859 123179859 C T KIAA1109 Missense_Mutation p.T2208I 0.15 probably_damaging(0.996) TCGA-55-1595-01 4 126237791 126237791 C A FAT4 Missense_Mutation p.S75R 0.28 probably_damaging(0.977) TCGA-55-1595-01 4 138442797 138442797 A T PCDH18 Missense_Mutation p.W932R 0.20 deleterious(0) probably_damaging(0.999) TCGA-55-1595-01 4 151023955 151023955 T C DCLK2 Silent p.D249D 0.25 TCGA-55-1595-01 4 152622522 152622522 G A PET112 Nonsense_Mutation p.Q386* 0.34 TCGA-55-1595-01 4 38690565 38690565 G T KLF3 Silent p.P139P 0.39 TCGA-55-1595-01 4 4275346 4275346 C A LYAR Missense_Mutation p.G295C 0.15 tolerated(0.07) possibly_damaging(0.711) TCGA-55-1595-01 4 44176724 44176724 G T KCTD8 3'UTR 0.12 TCGA-55-1595-01 4 44653604 44653604 A G YIPF7 Missense_Mutation p.L13S 0.33 deleterious_low_confidence(0) benign(0.004) TCGA-55-1595-01 4 47455122 47455122 C T COMMD8 Missense_Mutation p.R162K 0.18 tolerated(1) benign(0.001) TCGA-55-1595-01 4 48147476 48147476 C A TEC Missense_Mutation p.R401L 0.32 deleterious(0) probably_damaging(0.931) TCGA-55-1595-01 4 66356315 66356315 T A EPHA5 Silent p.A394A 0.19 TCGA-55-1595-01 4 70455270 70455270 G T UGT2A1 Missense_Mutation p.H634Q 0.15 deleterious(0) probably_damaging(0.996) TCGA-55-1595-01 4 71200918 71200918 T A CABS1 Nonsense_Mutation p.Y54* 0.20 TCGA-55-1595-01 4 74277728 74277728 G C ALB Silent p.L243L 0.15 TCGA-55-1595-01 4 75246777 75246777 G A EREG Silent p.K67K 0.10 TCGA-55-1595-01 4 77234393 77234393 G T CCDC158 Missense_Mutation p.S1091Y 0.28 deleterious(0) probably_damaging(0.992) TCGA-55-1595-01 4 77817346 77817346 C A SOWAHB Nonsense_Mutation p.E553* 0.25 TCGA-55-1595-01 4 96761790 96761790 C T PDHA2 Silent p.G163G 0.29 TCGA-55-1595-01 5 10250442 10250442 G T CCT5 5'UTR 0.35 TCGA-55-1595-01 5 133541766 133541766 A G PPP2CA Silent p.T53T 0.37 TCGA-55-1595-01 5 135567123 135567123 G A TRPC7 Silent p.Y653Y 0.13 TCGA-55-1595-01 5 137735660 137735660 G T KDM3B Missense_Mutation p.C1053F 0.11 deleterious(0) possibly_damaging(0.836) TCGA-55-1595-01 5 139751895 139751895 G A SLC4A9 Silent p.L937L 0.30 TCGA-55-1595-01 5 140481424 140481424 A G PCDHB3 Silent p.V397V 0.22 TCGA-55-1595-01 5 140537271 140537271 C A PCDHB17 Silent p.T565T 0.23 TCGA-55-1595-01 5 140574229 140574229 C A PCDHB10 Missense_Mutation p.L702I 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.74) TCGA-55-1595-01 5 141336580 141336580 C T PCDH12 Silent p.V279V 0.29 TCGA-55-1595-01 5 141359874 141359875 - G RNF14 Frame_Shift_Ins p.L342Vfs*10 0.21 TCGA-55-1595-01 5 148388514 148388514 G T SH3TC2 Silent p.L1126L 0.15 TCGA-55-1595-01 5 149919745 149919745 C G NDST1 Silent p.L556L 0.11 TCGA-55-1595-01 5 150897191 150897191 A T FAT2 Missense_Mutation p.V3818D 0.28 benign(0.202) TCGA-55-1595-01 5 153174228 153174228 T C GRIA1 Missense_Mutation p.L783S 0.14 deleterious(0) probably_damaging(1) TCGA-55-1595-01 5 154395374 154395374 G A KIF4B Missense_Mutation p.R652H 0.16 tolerated(0.06) benign(0.035) TCGA-55-1595-01 5 156590618 156590618 G C FAM71B Missense_Mutation p.P220A 0.34 tolerated(0.58) benign(0.003) TCGA-55-1595-01 5 16177941 16177941 T A MARCH11 Missense_Mutation p.H196L 0.36 deleterious(0) probably_damaging(0.994) TCGA-55-1595-01 5 167625975 167625975 C A TENM2 Silent p.T1006T 0.42 TCGA-55-1595-01 5 176308331 176308331 C A HK3 Missense_Mutation p.D867Y 0.23 deleterious(0) probably_damaging(1) TCGA-55-1595-01 5 180052973 180052973 G T FLT4 Missense_Mutation p.S439R 0.42 deleterious(0.03) possibly_damaging(0.582) TCGA-55-1595-01 5 32077588 32077588 C G PDZD2 Silent p.T1186T 0.11 TCGA-55-1595-01 5 41739504 41739504 C G OXCT1 Silent p.G503G 0.10 TCGA-55-1595-01 5 45262863 45262863 A G HCN1 Silent p.T611T 0.34 TCGA-55-1595-01 5 50689434 50689434 T C ISL1 Missense_Mutation p.I347T 0.10 tolerated_low_confidence(0.08) benign(0.01) TCGA-55-1595-01 5 5303444 5303444 C A ADAMTS16 Silent p.P951P 0.48 TCGA-55-1595-01 5 5457835 5457836 - A KIAA0947 Frame_Shift_Ins p.P362Tfs*7 0.11 TCGA-55-1595-01 5 6625775 6625775 C T NSUN2 Missense_Mutation p.E123K 0.27 deleterious(0.03) benign(0.256) TCGA-55-1595-01 5 72419547 72419547 G A TMEM171 Missense_Mutation p.G116E 0.04 deleterious(0) probably_damaging(1) TCGA-55-1595-01 5 75919099 75919099 A G F2RL2 5'UTR 0.28 TCGA-55-1595-01 5 92920775 92920775 G T NR2F1 Missense_Mutation p.A16S 0.30 tolerated_low_confidence(0.79) benign(0.008) TCGA-55-1595-01 5 95011279 95011279 C A SPATA9 Missense_Mutation p.R72L 0.24 tolerated(0.14) benign(0.031) TCGA-55-1595-01 6 116758380 116758380 G T DSE Missense_Mutation p.A917S 0.31 deleterious_low_confidence(0.05) possibly_damaging(0.453) TCGA-55-1595-01 6 127898618 127898618 G T C6orf58 Missense_Mutation p.W96C 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-55-1595-01 6 132211484 132211484 G T ENPP1 Missense_Mutation p.G871W 0.25 deleterious(0) probably_damaging(0.998) TCGA-55-1595-01 6 153043128 153043128 C T MYCT1 Silent p.L150L 0.25 TCGA-55-1595-01 6 161575173 161575173 C A AGPAT4 Intron 0.21 TCGA-55-1595-01 6 18399923 18399923 G C RNF144B Missense_Mutation p.C53S 0.14 deleterious(0) probably_damaging(1) TCGA-55-1595-01 6 26251899 26251899 C T HIST1H2BH Silent p.S7S 0.09 TCGA-55-1595-01 6 29142163 29142163 C A OR2J2 Missense_Mutation p.L251I 0.15 tolerated(0.25) possibly_damaging(0.751) TCGA-55-1595-01 6 34029667 34029667 C A GRM4 Intron 0.31 TCGA-55-1595-01 6 35199627 35199627 C A SCUBE3 Silent p.R154R 0.12 TCGA-55-1595-01 6 43413337 43413337 G T ABCC10 Missense_Mutation p.A1011S 0.10 deleterious(0) benign(0.43) TCGA-55-1595-01 6 46801130 46801130 G A MEP1A Silent p.V488V 0.10 TCGA-55-1595-01 6 47846657 47846657 G T PTCHD4 Silent p.I641I 0.29 TCGA-55-1595-01 6 49808671 49808671 A G CRISP1 Missense_Mutation p.I158T 0.21 deleterious(0) benign(0.086) TCGA-55-1595-01 6 85457659 85457659 G T TBX18 Silent p.V306V 0.17 TCGA-55-1595-01 7 100674963 100674963 C A MUC17 Missense_Mutation p.P89H 0.12 benign(0.003) TCGA-55-1595-01 7 112723734 112723734 C A GPR85 Missense_Mutation p.R348L 0.32 tolerated(0.29) benign(0.4) TCGA-55-1595-01 7 122635568 122635568 T A TAS2R16 Missense_Mutation p.R41W 0.29 deleterious(0.01) probably_damaging(0.98) TCGA-55-1595-01 7 130044546 130044546 T G CEP41 Missense_Mutation p.N94T 0.43 tolerated(0.41) benign(0.007) TCGA-55-1595-01 7 134215482 134215482 G T AKR1B10 Nonsense_Mutation p.E52* 0.13 TCGA-55-1595-01 7 137170141 137170141 G C DGKI Silent p.G802G 0.17 TCGA-55-1595-01 7 138546052 138546052 C A KIAA1549 Missense_Mutation p.A1694S 0.27 deleterious(0) probably_damaging(1) TCGA-55-1595-01 7 142008841 142008841 C G TRBV3-1 Missense_Mutation p.S105C 0.13 deleterious(0) probably_damaging(0.998) TCGA-55-1595-01 7 147183029 147183029 G T CNTNAP2 Missense_Mutation p.C558F 0.33 deleterious(0) probably_damaging(0.998) TCGA-55-1595-01 7 2962898 2962898 C G CARD11 Silent p.T670T 0.12 TCGA-55-1595-01 7 31617846 31617846 A G CCDC129 Missense_Mutation p.D349G 0.23 tolerated(0.19) benign(0.084) TCGA-55-1595-01 7 4153064 4153064 G T SDK1 Missense_Mutation p.R1193L 0.21 deleterious(0) probably_damaging(0.989) TCGA-55-1595-01 7 4260956 4260956 C A SDK1 Missense_Mutation p.D1929E 0.08 tolerated(0.22) benign(0.002) TCGA-55-1595-01 7 48007507 48007507 T A HUS1 Missense_Mutation p.H219L 0.40 tolerated(0.07) benign(0) TCGA-55-1595-01 7 48312352 48312352 G C ABCA13 Missense_Mutation p.C1030S 0.19 probably_damaging(0.999) TCGA-55-1595-01 7 75933446 75933446 G T HSPB1 Missense_Mutation p.G192W 0.23 deleterious(0) possibly_damaging(0.798) TCGA-55-1595-01 7 82595113 82595113 G C PCLO Missense_Mutation p.Q1331E 0.19 unknown(0) TCGA-55-1595-01 7 92848849 92848849 G T HEPACAM2 Intron 0.27 TCGA-55-1595-01 7 93055583 93055583 G A CALCR 3'UTR 0.20 TCGA-55-1595-01 8 110980325 110980325 A G KCNV1 Missense_Mutation p.W499R 0.17 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-55-1595-01 8 113246620 113246620 C A CSMD3 Nonsense_Mutation p.E3572* 0.43 TCGA-55-1595-01 8 131848567 131848567 G A ADCY8 Silent p.Y877Y 0.08 TCGA-55-1595-01 8 133044267 133044267 T A OC90 Missense_Mutation p.S298C 0.12 deleterious(0.02) possibly_damaging(0.893) TCGA-55-1595-01 8 139629164 139629164 C A COL22A1 Missense_Mutation p.G1288V 0.07 unknown(0) TCGA-55-1595-01 8 139629166 139629166 G T COL22A1 Silent p.P1287P 0.07 TCGA-55-1595-01 8 139833476 139833476 G T COL22A1 Missense_Mutation p.A383E 0.12 unknown(0) TCGA-55-1595-01 8 27277505 27277505 G T PTK2B Missense_Mutation p.D100Y 0.45 deleterious(0) probably_damaging(0.971) TCGA-55-1595-01 8 3245100 3245100 C T CSMD1 Missense_Mutation p.D900N 0.26 benign(0.072) TCGA-55-1595-01 8 52284445 52284445 C G PXDNL Missense_Mutation p.D1297H 0.15 deleterious(0) possibly_damaging(0.76) TCGA-55-1595-01 8 65537096 65537096 C A CYP7B1 Missense_Mutation p.R41S 0.15 deleterious(0) benign(0.214) TCGA-55-1595-01 8 75756215 75756215 G T PI15 Splice_Site p.X92_splice 0.44 TCGA-55-1595-01 8 86352059 86352059 T C CA3 Silent p.Y51Y 0.16 TCGA-55-1595-01 8 87683215 87683215 C A CNGB3 Missense_Mutation p.L150F 0.08 deleterious(0) probably_damaging(0.989) TCGA-55-1595-01 8 88249177 88249177 T A CNBD1 Missense_Mutation p.L203Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-1595-01 8 89053837 89053837 G T MMP16 Missense_Mutation p.A559D 0.12 tolerated(0.44) probably_damaging(0.936) TCGA-55-1595-01 8 95390439 95390439 G A RAD54B Silent p.D828D 0.13 TCGA-55-1595-01 9 101810095 101810095 G A COL15A1 Missense_Mutation p.G903R 0.10 deleterious(0) probably_damaging(1) TCGA-55-1595-01 9 105767937 105767937 G C CYLC2 Missense_Mutation p.D342H 0.17 tolerated_low_confidence(0.14) unknown(0) TCGA-55-1595-01 9 112025334 112025334 T C EPB41L4B Silent p.L209L 0.41 TCGA-55-1595-01 9 112144670 112144670 C G PTPN3 Missense_Mutation p.V814L 0.23 deleterious(0) possibly_damaging(0.591) TCGA-55-1595-01 9 18826354 18826354 G C ADAMTSL1 Missense_Mutation p.G1336A 0.19 deleterious(0.05) benign(0.06) TCGA-55-1595-01 9 19119764 19119764 C A PLIN2 Nonsense_Mutation p.G221* 0.28 TCGA-55-1595-01 9 20717802 20717802 C T FOCAD Missense_Mutation p.H23Y 0.53 tolerated(0.2) possibly_damaging(0.639) TCGA-55-1595-01 9 2718919 2718919 T G KCNV2 Missense_Mutation p.S394A 0.13 deleterious(0) probably_damaging(1) TCGA-55-1595-01 9 27209185 27209185 A G TEK Missense_Mutation p.H881R 0.09 deleterious(0) benign(0.083) TCGA-55-1595-01 9 35045314 35045314 C A C9orf131 Missense_Mutation p.S896R 0.21 deleterious(0.01) benign(0.26) TCGA-55-1595-01 9 75450879 75450879 G T TMC1 Missense_Mutation p.G758V 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-55-1595-01 9 8492981 8492981 T C PTPRD Splice_Site p.X784_splice 0.21 TCGA-55-1595-01 9 90499889 90499889 G C SPATA31E1 Missense_Mutation p.G163R 0.51 deleterious(0.01) possibly_damaging(0.793) TCGA-55-1595-01 X 105011564 105011564 C G IL1RAPL2 Missense_Mutation p.N657K 0.07 tolerated_low_confidence(1) benign(0.086) TCGA-55-1595-01 X 105011768 105011768 C G IL1RAPL2 3'UTR 0.21 TCGA-55-1595-01 X 108652340 108652340 C A GUCY2F Missense_Mutation p.G617W 0.10 deleterious(0.02) probably_damaging(1) TCGA-55-1595-01 X 111698840 111698840 C A ZCCHC16 Missense_Mutation p.A295D 0.10 deleterious(0) probably_damaging(1) TCGA-55-1595-01 X 117520383 117520383 C A WDR44 Intron 0.14 TCGA-55-1595-01 X 118771036 118771036 C A SEPT6 Nonsense_Mutation p.E304* 0.11 TCGA-55-1595-01 X 125685889 125685889 T A DCAF12L1 Missense_Mutation p.S235C 0.33 deleterious(0) possibly_damaging(0.765) TCGA-55-1595-01 X 128691359 128691359 C A OCRL Missense_Mutation p.P99H 0.55 deleterious(0.01) possibly_damaging(0.847) TCGA-55-1595-01 X 135426564 135426564 T C GPR112 Silent p.N233N 0.44 TCGA-55-1595-01 X 135428319 135428319 A C GPR112 Silent p.V818V 0.44 TCGA-55-1595-01 X 138856885 138856885 A T ATP11C Missense_Mutation p.L730Q 0.42 tolerated(0.36) possibly_damaging(0.616) TCGA-55-1595-01 X 14748344 14748344 C A GLRA2 Missense_Mutation p.R366S 0.20 tolerated(0.44) benign(0.026) TCGA-55-1595-01 X 149100952 149100952 G T CXorf40B Missense_Mutation p.P96H 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-55-1595-01 X 149832038 149832038 T C MTM1 Missense_Mutation p.W534R 0.53 deleterious(0) probably_damaging(0.999) TCGA-55-1595-01 X 150912466 150912466 C A CNGA2 Silent p.G497G 0.06 TCGA-55-1595-01 X 151336626 151336626 G A GABRA3 3'UTR 0.35 TCGA-55-1595-01 X 151935230 151935230 C - MAGEA3 Frame_Shift_Del p.E313Kfs*28 0.14 TCGA-55-1595-01 X 153052271 153052271 G A IDH3G Silent p.Y303Y 0.44 TCGA-55-1595-01 X 153629197 153629197 G T RPL10 3'UTR 0.42 TCGA-55-1595-01 X 153629198 153629198 G T RPL10 3'UTR 0.40 TCGA-55-1595-01 X 153716544 153716544 T A SLC10A3 Nonsense_Mutation p.K246* 0.35 TCGA-55-1595-01 X 153736186 153736186 C A FAM3A Missense_Mutation p.S114I 0.53 deleterious(0) benign(0.146) TCGA-55-1595-01 X 154736681 154736681 G T TMLHE Silent p.L291L 0.39 TCGA-55-1595-01 X 155003884 155003884 T A SPRY3 Silent p.P117P 0.36 TCGA-55-1595-01 X 155234200 155234200 G A IL9R Silent p.L183L 0.09 TCGA-55-1595-01 X 1584615 1584615 C A P2RY8 Silent p.L279L 0.35 TCGA-55-1595-01 X 17152022 17152022 G C REPS2 Missense_Mutation p.A552P 0.34 tolerated(0.23) benign(0.323) TCGA-55-1595-01 X 32509489 32509489 C A DMD Nonsense_Mutation p.E843* 0.25 TCGA-55-1595-01 X 32663083 32663083 C A DMD Nonsense_Mutation p.E383* 0.30 TCGA-55-1595-01 X 36103605 36103605 A T CHDC2 Missense_Mutation p.K197N 0.26 deleterious(0.02) benign(0.403) TCGA-55-1595-01 X 43652683 43652683 G C MAOB Missense_Mutation p.P304R 0.37 tolerated(0.14) possibly_damaging(0.8) TCGA-55-1595-01 X 46332839 46332839 A G KRBOX4 3'UTR 0.47 TCGA-55-1595-01 X 48341100 48341100 C A FTSJ1 Missense_Mutation p.P292H 0.36 deleterious(0.04) benign(0.012) TCGA-55-1595-01 X 54776267 54776267 C T ITIH6 3'UTR 0.48 TCGA-55-1595-01 X 55515250 55515250 C A USP51 Silent p.A41A 0.33 TCGA-55-1595-01 X 65242213 65242213 T C VSIG4 Silent p.G364G 0.30 TCGA-55-1595-01 X 99942278 99942278 C T SYTL4 Intron 0.13 TCGA-55-1596-01 10 111642213 111642213 C A XPNPEP1 Missense_Mutation p.A340S 0.16 deleterious(0.04) possibly_damaging(0.756) TCGA-55-1596-01 10 113920368 113920368 T C GPAM Missense_Mutation p.I585V 0.30 tolerated(0.62) benign(0.001) TCGA-55-1596-01 10 118891655 118891655 C A VAX1 3'Flank 0.11 TCGA-55-1596-01 10 118969655 118969655 C G KCNK18 Missense_Mutation p.P334A 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-55-1596-01 10 118969656 118969656 C T KCNK18 Missense_Mutation p.P334L 0.28 deleterious(0) probably_damaging(0.998) TCGA-55-1596-01 10 17195622 17195622 T C TRDMT1 Missense_Mutation p.Y320C 0.41 deleterious(0) probably_damaging(0.972) TCGA-55-1596-01 10 18289671 18289671 T C SLC39A12 Missense_Mutation p.I559T 0.37 deleterious(0.02) possibly_damaging(0.891) TCGA-55-1596-01 10 31137569 31137569 C T ZNF438 Missense_Mutation p.V589M 0.56 deleterious(0) probably_damaging(0.999) TCGA-55-1596-01 10 55587214 55587214 G A PCDH15 Missense_Mutation p.P1436S 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.507) TCGA-55-1596-01 10 55721652 55721652 C A PCDH15 Nonsense_Mutation p.G957* 0.42 TCGA-55-1596-01 10 55955474 55955474 C G PCDH15 Missense_Mutation p.R425T 0.15 tolerated(0.57) benign(0.017) TCGA-55-1596-01 10 7326244 7326244 C G SFMBT2 Intron 0.78 TCGA-55-1596-01 10 73539147 73539147 C T CDH23 Nonsense_Mutation p.R1776* 0.08 TCGA-55-1596-01 10 85991733 85991733 G A LRIT1 Nonsense_Mutation p.Q608* 0.18 TCGA-55-1596-01 10 910104 910104 C A LARP4B Missense_Mutation p.W83L 0.68 deleterious(0) probably_damaging(0.999) TCGA-55-1596-01 10 910105 910105 A T LARP4B Missense_Mutation p.W83R 0.70 deleterious(0) probably_damaging(0.999) TCGA-55-1596-01 11 100998942 100998942 G T PGR Missense_Mutation p.A287E 0.80 deleterious_low_confidence(0) benign(0.236) TCGA-55-1596-01 11 123893833 123893833 G - OR10G9 Frame_Shift_Del p.N40Tfs*7 0.42 TCGA-55-1596-01 11 123909592 123909592 C - OR10G7 Frame_Shift_Del p.N40Tfs*7 0.15 TCGA-55-1596-01 11 18434300 18434300 A G LDHC Silent p.L12L 0.58 TCGA-55-1596-01 11 20968951 20968951 C A NELL1 Missense_Mutation p.P381T 0.67 tolerated(0.23) possibly_damaging(0.621) TCGA-55-1596-01 11 65305955 65305955 G C SCYL1 Missense_Mutation p.R782P 0.44 deleterious(0) probably_damaging(0.993) TCGA-55-1596-01 11 66618624 66618624 T C PC Missense_Mutation p.I704V 0.78 tolerated(0.3) benign(0.094) TCGA-55-1596-01 11 68031301 68031301 C A C11orf24 5'UTR 0.94 TCGA-55-1596-01 11 92526040 92526040 G A FAT3 Silent p.A1573A 0.13 TCGA-55-1596-01 12 106632981 106632981 T C CKAP4 Missense_Mutation p.S544G 0.40 tolerated(0.31) benign(0.084) TCGA-55-1596-01 12 128899948 128899948 C A TMEM132C Missense_Mutation p.R253S 0.44 deleterious(0.04) possibly_damaging(0.56) TCGA-55-1596-01 12 26596529 26596529 C T ITPR2 Missense_Mutation p.D2133N 0.38 tolerated(0.16) benign(0.003) TCGA-55-1596-01 12 41967041 41967041 G T PDZRN4 Missense_Mutation p.E820D 0.40 tolerated(0.47) benign(0.012) TCGA-55-1596-01 12 43825245 43825245 T G ADAMTS20 Missense_Mutation p.N1051H 0.24 deleterious(0.04) benign(0.029) TCGA-55-1596-01 12 49998266 49998266 C T FAM186B Missense_Mutation p.R51H 0.11 deleterious(0.05) benign(0.187) TCGA-55-1596-01 12 51868922 51868922 T A SLC4A8 Missense_Mutation p.F702I 0.14 deleterious(0) probably_damaging(0.998) TCGA-55-1596-01 12 53223860 53223860 T C KRT79 Missense_Mutation p.K268E 0.17 deleterious(0) benign(0.082) TCGA-55-1596-01 12 6059022 6059022 G A VWF Missense_Mutation p.T2728I 0.10 tolerated(0.12) possibly_damaging(0.86) TCGA-55-1596-01 12 68549134 68549134 T A IFNG Nonstop_Mutation p.*167Lext*17 0.21 TCGA-55-1596-01 12 75444442 75444442 C A KCNC2 Missense_Mutation p.W448L 0.25 deleterious(0.01) probably_damaging(0.909) TCGA-55-1596-01 12 97158873 97158873 G T C12orf55 Missense_Mutation p.A2720S 0.44 tolerated(0.14) benign(0.001) TCGA-55-1596-01 13 29600241 29600241 T C MTUS2 Missense_Mutation p.V479A 0.57 tolerated(0.41) benign(0.004) TCGA-55-1596-01 13 49752748 49752748 C A FNDC3A Nonsense_Mutation p.Y525* 0.50 TCGA-55-1596-01 13 72255950 72255950 G T DACH1 Missense_Mutation p.S316Y 0.38 probably_damaging(0.997) TCGA-55-1596-01 14 105407783 105407783 C T AHNAK2 Missense_Mutation p.E4669K 0.27 benign(0.054) TCGA-55-1596-01 14 44973886 44973886 G A FSCB Missense_Mutation p.P769S 0.19 tolerated(0.31) unknown(0) TCGA-55-1596-01 14 54896978 54896978 C G CNIH1 Splice_Site p.X136_splice 0.20 TCGA-55-1596-01 14 59113521 59113521 C A DACT1 Nonsense_Mutation p.S727* 0.51 TCGA-55-1596-01 14 64065716 64065716 G C WDR89 Missense_Mutation p.S315R 0.49 deleterious(0) benign(0.049) TCGA-55-1596-01 14 71267478 71267478 C A MAP3K9 Silent p.L242L 0.24 TCGA-55-1596-01 14 71444881 71444881 T C PCNX Silent p.S609S 0.50 TCGA-55-1596-01 14 72945023 72945023 C G RGS6 Silent p.S280S 0.20 TCGA-55-1596-01 15 100331863 100331863 C T AC090825.1 5'Flank 0.10 TCGA-55-1596-01 15 20169943 20169943 G T IGHV1OR15-9 Missense_Mutation p.T110K 0.11 deleterious(0) probably_damaging(0.931) TCGA-55-1596-01 15 23810997 23810997 C T MKRN3 Missense_Mutation p.A23V 0.51 tolerated(0.09) unknown(0) TCGA-55-1596-01 15 25310219 25310219 A T SNORD116-6 RNA 0.27 TCGA-55-1596-01 15 29409389 29409389 C T APBA2 3'UTR 0.44 TCGA-55-1596-01 15 41799788 41799788 G A LTK Silent p.L439L 0.66 TCGA-55-1596-01 15 43398254 43398254 C A UBR1 5'UTR 0.24 TCGA-55-1596-01 15 64495340 64495340 T C CSNK1G1 Missense_Mutation p.T350A 0.72 tolerated(0.47) benign(0.438) TCGA-55-1596-01 15 65499310 65499310 G A CILP Silent p.R78R 0.10 TCGA-55-1596-01 15 66795413 66795413 G C RPL4 Missense_Mutation p.Q89E 0.29 deleterious(0) possibly_damaging(0.868) TCGA-55-1596-01 15 78558628 78558628 T G DNAJA4 Intron 0.70 TCGA-55-1596-01 15 82574915 82574915 G T FAM154B Nonsense_Mutation p.E237* 0.11 TCGA-55-1596-01 15 89172497 89172497 C T AEN Missense_Mutation p.A194V 0.03 deleterious(0) probably_damaging(1) TCGA-55-1596-01 15 90168849 90168849 T A TICRR Missense_Mutation p.L1770M 0.32 deleterious(0) probably_damaging(0.986) TCGA-55-1596-01 15 97328458 97328458 C A SPATA8 3'UTR 0.62 TCGA-55-1596-01 16 10032335 10032335 T C GRIN2A Missense_Mutation p.Q163R 0.36 deleterious(0) possibly_damaging(0.524) TCGA-55-1596-01 16 10032336 10032336 G T GRIN2A Missense_Mutation p.Q163K 0.36 deleterious(0.03) benign(0.338) TCGA-55-1596-01 16 11827847 11827847 T C TXNDC11 Missense_Mutation p.Y187C 0.41 deleterious(0) probably_damaging(0.999) TCGA-55-1596-01 16 1392740 1392740 G T BAIAP3 Missense_Mutation p.Q397H 0.19 deleterious(0.03) benign(0.005) TCGA-55-1596-01 16 15729639 15729639 C T KIAA0430 Silent p.G235G 0.39 TCGA-55-1596-01 16 18597207 18597207 C G ABCC6P1 RNA 0.09 TCGA-55-1596-01 16 242974 242974 C T LUC7L Missense_Mutation p.R243H 0.31 tolerated(0.06) unknown(0) TCGA-55-1596-01 16 27510036 27510036 G C GTF3C1 Missense_Mutation p.P694A 0.31 deleterious(0) probably_damaging(0.999) TCGA-55-1596-01 16 343556 343556 C T AXIN1 Silent p.Q706Q 0.38 TCGA-55-1596-01 16 4563767 4563767 C A CDIP1 Silent p.P57P 0.43 TCGA-55-1596-01 16 50134194 50134194 T G HEATR3 Missense_Mutation p.S551R 0.30 tolerated(0.1) benign(0.031) TCGA-55-1596-01 16 53682886 53682886 T C RPGRIP1L Missense_Mutation p.H765R 0.42 tolerated(0.18) benign(0) TCGA-55-1596-01 16 55530913 55530913 C T MMP2 Silent p.L516L 0.07 TCGA-55-1596-01 16 67200263 67200263 C G HSF4 Missense_Mutation p.Q176E 0.29 deleterious(0) benign(0.298) TCGA-55-1596-01 16 88871952 88871952 G T CDT1 Missense_Mutation p.R198L 0.42 deleterious(0) possibly_damaging(0.859) TCGA-55-1596-01 17 10297637 10297637 C A MYH8 Nonsense_Mutation p.E1699* 0.63 TCGA-55-1596-01 17 2966252 2966252 G A OR1D5 Missense_Mutation p.S217F 0.46 deleterious(0) probably_damaging(1) TCGA-55-1596-01 17 34842536 34842536 A G ZNHIT3 5'UTR 0.46 TCGA-55-1596-01 17 5983834 5983834 G A WSCD1 5'UTR 0.56 TCGA-55-1596-01 17 60814179 60814179 A C MARCH10 Missense_Mutation p.S350R 0.25 tolerated(0.08) benign(0.006) TCGA-55-1596-01 17 65103287 65103287 C T HELZ Missense_Mutation p.E1747K 0.47 deleterious_low_confidence(0.05) unknown(0) TCGA-55-1596-01 17 7577097 7577097 C A TP53 Missense_Mutation p.D281Y 0.66 deleterious(0) probably_damaging(0.999) TCGA-55-1596-01 17 76060902 76060902 C T TNRC6C Missense_Mutation p.A829V 0.48 deleterious(0) benign(0.423) TCGA-55-1596-01 17 77755587 77755587 G A CBX2 Missense_Mutation p.R92H 0.25 tolerated(0.63) benign(0.003) TCGA-55-1596-01 17 79916815 79916816 TG ATT NOTUM Frame_Shift_Ins p.N176Kfs*11 0.17 TCGA-55-1596-01 18 12506572 12506572 C A SPIRE1 Silent p.R292R 0.25 TCGA-55-1596-01 18 30349754 30349754 G T KLHL14 Silent p.A267A 0.33 TCGA-55-1596-01 18 30804833 30804833 A G CCDC178 Missense_Mutation p.I575T 0.39 tolerated(0.16) benign(0.081) TCGA-55-1596-01 18 50278670 50278670 G C DCC Missense_Mutation p.G113A 0.60 deleterious(0) probably_damaging(0.998) TCGA-55-1596-01 19 11107009 11107019 AAGGCTGCCCA - SMARCA4 Frame_Shift_Del p.K572Gfs*75 0.64 TCGA-55-1596-01 19 11135100 11135100 G C SMARCA4 Missense_Mutation p.E1023Q 0.50 possibly_damaging(0.678) TCGA-55-1596-01 19 1220629 1220629 C T STK11 Missense_Mutation p.S216F 0.64 deleterious(0) probably_damaging(0.999) TCGA-55-1596-01 19 1220706 1220706 G T STK11 Missense_Mutation p.G242W 0.64 deleterious(0) probably_damaging(1) TCGA-55-1596-01 19 12761005 12761005 A C MAN2B1 Missense_Mutation p.F693C 0.70 deleterious(0) probably_damaging(0.999) TCGA-55-1596-01 19 17746954 17746954 C T UNC13A Missense_Mutation p.E1032K 0.73 tolerated(0.19) benign(0.02) TCGA-55-1596-01 19 39991296 39991296 A T DLL3 Missense_Mutation p.L131F 0.63 tolerated(0.2) possibly_damaging(0.801) TCGA-55-1596-01 19 57327504 57327504 T C PEG3 Missense_Mutation p.Y769C 0.71 tolerated(0.21) benign(0.001) TCGA-55-1596-01 1 103477982 103477982 C A COL11A1 Missense_Mutation p.R539I 0.18 unknown(0) TCGA-55-1596-01 1 103544261 103544261 G T COL11A1 Silent p.A147A 0.42 TCGA-55-1596-01 1 10364654 10364655 - AGAC KIF1B Intron 0.21 TCGA-55-1596-01 1 151259952 151259952 G A ZNF687 Silent p.R395R 0.28 TCGA-55-1596-01 1 152286349 152286349 G T FLG Missense_Mutation p.S338Y 0.41 benign(0.168) TCGA-55-1596-01 1 152733434 152733434 T C KPRP Missense_Mutation p.I457T 0.35 tolerated(0.41) benign(0.036) TCGA-55-1596-01 1 154315767 154315767 G - ATP8B2 Frame_Shift_Del p.M577Ifs*4 0.36 TCGA-55-1596-01 1 154516513 154516513 G T TDRD10 Missense_Mutation p.R193L 0.39 tolerated(0.65) benign(0.069) TCGA-55-1596-01 1 155874285 155874285 A C RIT1 Missense_Mutation p.F99L 0.39 tolerated(0.07) probably_damaging(1) TCGA-55-1596-01 1 155935547 155935547 G A ARHGEF2 Silent p.T115T 0.34 TCGA-55-1596-01 1 158609691 158609691 C A SPTA1 Missense_Mutation p.S1615I 0.37 deleterious(0) possibly_damaging(0.511) TCGA-55-1596-01 1 159163801 159163801 G C CADM3 Missense_Mutation p.R255T 0.32 tolerated(0.09) benign(0.082) TCGA-55-1596-01 1 16069342 16069342 C T TMEM82 Missense_Mutation p.A34V 0.27 deleterious(0) benign(0.341) TCGA-55-1596-01 1 161953812 161953812 G T OLFML2B Missense_Mutation p.L636M 0.28 deleterious(0.01) possibly_damaging(0.838) TCGA-55-1596-01 1 177001659 177001659 G T ASTN1 Missense_Mutation p.S266R 0.37 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-55-1596-01 1 178310735 178310735 A G RASAL2 Intron 0.19 TCGA-55-1596-01 1 178412214 178412214 G T RASAL2 Silent p.L444L 0.26 TCGA-55-1596-01 1 17949602 17949602 A T ARHGEF10L Missense_Mutation p.I378F 0.42 deleterious(0) probably_damaging(0.993) TCGA-55-1596-01 1 181719609 181719609 T C CACNA1E Intron 0.35 TCGA-55-1596-01 1 190067177 190067177 C G BRINP3 Missense_Mutation p.D758H 0.36 deleterious(0) possibly_damaging(0.498) TCGA-55-1596-01 1 190067891 190067891 G C BRINP3 Missense_Mutation p.R520G 0.39 deleterious(0) probably_damaging(0.995) TCGA-55-1596-01 1 197072028 197072028 C A ASPM Missense_Mutation p.R2118M 0.27 tolerated(0.47) benign(0.007) TCGA-55-1596-01 1 204588136 204588136 G A LRRN2 Missense_Mutation p.R329C 0.18 tolerated(0.11) probably_damaging(0.947) TCGA-55-1596-01 1 226924682 226924682 C A ITPKB Missense_Mutation p.A160S 0.32 tolerated_low_confidence(0.07) benign(0.267) TCGA-55-1596-01 1 229779384 229779384 A T URB2 Missense_Mutation p.M1247L 0.34 tolerated(0.75) benign(0) TCGA-55-1596-01 1 236925779 236925779 G A ACTN2 Missense_Mutation p.E849K 0.26 deleterious(0) probably_damaging(0.998) TCGA-55-1596-01 1 237880668 237880668 G A RYR2 Silent p.L3498L 0.24 TCGA-55-1596-01 1 242253060 242253060 C A PLD5 3'UTR 0.48 TCGA-55-1596-01 1 243809209 243809209 G A AKT3 Missense_Mutation p.H139Y 0.30 tolerated(0.09) benign(0.071) TCGA-55-1596-01 1 248112482 248112482 G T OR2L8 Missense_Mutation p.G108V 0.08 deleterious(0.04) benign(0.04) TCGA-55-1596-01 1 248224306 248224306 G T OR2L3 Missense_Mutation p.G108V 0.39 deleterious(0.04) benign(0.029) TCGA-55-1596-01 1 248636980 248636980 T G OR2T3 Missense_Mutation p.L110R 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-55-1596-01 1 248737843 248737843 C A OR2T34 Silent p.A72A 0.52 TCGA-55-1596-01 1 32573644 32573644 C T KPNA6 5'UTR 0.42 TCGA-55-1596-01 1 44057085 44057085 G A PTPRF Silent p.K464K 0.31 TCGA-55-1596-01 1 70488886 70488886 C A LRRC7 Nonsense_Mutation p.C503* 0.26 TCGA-55-1596-01 1 86898148 86898148 C T CLCA2 Silent p.T227T 0.46 TCGA-55-1596-01 1 93089858 93089858 C A EVI5 Missense_Mutation p.D552Y 0.13 deleterious(0) benign(0.423) TCGA-55-1596-01 20 10603806 10603806 G T SLX4IP Missense_Mutation p.A336S 0.37 tolerated(0.79) benign(0.085) TCGA-55-1596-01 20 18523047 18523047 G A SEC23B Splice_Site p.X504_splice 0.37 TCGA-55-1596-01 20 30136919 30136919 T C HM13 Splice_Site p.X180_splice 0.03 TCGA-55-1596-01 20 40980917 40980917 G T PTPRT Nonsense_Mutation p.Y523* 0.18 TCGA-55-1596-01 20 57829576 57829576 C T ZNF831 Silent p.P1604P 0.13 TCGA-55-1596-01 20 62630480 62630480 G C PRPF6 Missense_Mutation p.G285A 0.15 tolerated(0.17) benign(0.03) TCGA-55-1596-01 20 62708279 62708279 C T RGS19 5'UTR 0.10 TCGA-55-1596-01 20 947922 947922 C T RSPO4 Missense_Mutation p.D102N 0.27 tolerated(0.16) possibly_damaging(0.828) TCGA-55-1596-01 21 10862789 10862789 G C IGHV1OR21-1 Missense_Mutation p.E29Q 0.08 deleterious(0.02) possibly_damaging(0.73) TCGA-55-1596-01 21 11038767 11038767 A C BAGE2 RNA 0.12 TCGA-55-1596-01 21 15561369 15561369 T C LIPI Missense_Mutation p.I161V 0.17 tolerated(0.13) probably_damaging(0.998) TCGA-55-1596-01 21 28212371 28212371 G T ADAMTS1 Missense_Mutation p.H559N 0.36 tolerated(0.19) benign(0.002) TCGA-55-1596-01 21 31768627 31768627 C A KRTAP13-1 Missense_Mutation p.P75T 0.39 deleterious(0.03) probably_damaging(0.941) TCGA-55-1596-01 22 19124931 19124931 G A DGCR14 Missense_Mutation p.P314S 0.40 deleterious(0) probably_damaging(0.935) TCGA-55-1596-01 22 37708205 37708205 G T CYTH4 Nonsense_Mutation p.E368* 0.29 TCGA-55-1596-01 22 37770139 37770139 T C ELFN2 Missense_Mutation p.E479G 0.06 tolerated(0.09) benign(0.109) TCGA-55-1596-01 22 46345933 46345933 C A WNT7B Silent p.R55R 0.24 TCGA-55-1596-01 2 141032086 141032086 C A LRP1B Missense_Mutation p.R4350L 0.39 benign(0.25) TCGA-55-1596-01 2 141122289 141122289 C T LRP1B Nonsense_Mutation p.W3691* 0.12 TCGA-55-1596-01 2 141773418 141773418 G T LRP1B Silent p.A679A 0.33 TCGA-55-1596-01 2 141773419 141773419 G T LRP1B Missense_Mutation p.A679D 0.32 possibly_damaging(0.887) TCGA-55-1596-01 2 141819657 141819657 T A LRP1B Missense_Mutation p.Q400L 0.28 benign(0.227) TCGA-55-1596-01 2 141819658 141819658 G T LRP1B Missense_Mutation p.Q400K 0.28 benign(0.149) TCGA-55-1596-01 2 166010962 166010962 C T SCN3A Silent p.Q460Q 0.17 TCGA-55-1596-01 2 168725372 168725372 A C B3GALT1 5'Flank 0.30 TCGA-55-1596-01 2 179600341 179600341 T A TTN Silent p.T4944T 0.34 TCGA-55-1596-01 2 182521630 182521630 G T CERKL Missense_Mutation p.S35Y 0.28 tolerated_low_confidence(0.06) possibly_damaging(0.646) TCGA-55-1596-01 2 188216867 188216867 T C CALCRL Missense_Mutation p.I368V 0.25 tolerated(0.56) benign(0.001) TCGA-55-1596-01 2 208489111 208489111 C T METTL21A 5'UTR 0.13 TCGA-55-1596-01 2 74477490 74477490 C A SLC4A5 Missense_Mutation p.D545Y 0.38 deleterious(0) probably_damaging(1) TCGA-55-1596-01 2 75881899 75881899 C T MRPL19 Silent p.V171V 0.13 TCGA-55-1596-01 2 90259805 90259805 G T IGKV1D-8 Missense_Mutation p.G11V 0.14 tolerated(0.17) probably_damaging(0.93) TCGA-55-1596-01 3 121973004 121973004 T C CASR 5'UTR 0.47 TCGA-55-1596-01 3 123375980 123375980 T C MYLK Silent p.K1427K 0.45 TCGA-55-1596-01 3 129811966 129811966 C T RP11-93K22.13 Intron 0.15 TCGA-55-1596-01 3 130292827 130292827 T A COL6A6 Missense_Mutation p.V1002D 0.46 deleterious(0) probably_damaging(0.999) TCGA-55-1596-01 3 142503717 142503717 A T TRPC1 Nonsense_Mutation p.R378* 0.22 TCGA-55-1596-01 3 193019010 193019010 A T ATP13A5 Missense_Mutation p.L922Q 0.49 deleterious(0) possibly_damaging(0.53) TCGA-55-1596-01 3 35750491 35750491 A G ARPP21 Intron 0.23 TCGA-55-1596-01 3 42244278 42244279 - C TRAK1 Intron 0.43 TCGA-55-1596-01 3 48670747 48670747 G A SLC26A6 Missense_Mutation p.R87C 0.36 deleterious(0) probably_damaging(0.996) TCGA-55-1596-01 3 52940182 52940182 G A SFMBT1 Missense_Mutation p.R803W 0.10 deleterious(0) probably_damaging(0.97) TCGA-55-1596-01 3 65456009 65456009 G T MAGI1 Missense_Mutation p.P303H 0.69 deleterious(0) probably_damaging(0.997) TCGA-55-1596-01 4 1066945 1066945 C A RNF212 Missense_Mutation p.W204L 0.31 tolerated_low_confidence(0.53) benign(0) TCGA-55-1596-01 4 122782798 122782798 T A BBS7 Missense_Mutation p.R68W 0.53 deleterious(0.02) probably_damaging(0.955) TCGA-55-1596-01 4 15569349 15569349 A G CC2D2A Missense_Mutation p.H1113R 0.29 tolerated(0.8) benign(0.001) TCGA-55-1596-01 4 177604975 177604975 G T VEGFC 3'UTR 0.62 TCGA-55-1596-01 4 186244912 186244912 A T SNX25 Missense_Mutation p.E405D 0.28 tolerated(0.1) benign(0.004) TCGA-55-1596-01 4 62598911 62598911 A G LPHN3 Silent p.T278T 0.39 TCGA-55-1596-01 4 70460898 70460898 G T UGT2A1 Missense_Mutation p.P522T 0.22 deleterious(0) probably_damaging(1) TCGA-55-1596-01 4 71275347 71275347 G T PROL1 Missense_Mutation p.G101V 0.39 tolerated_low_confidence(0.24) probably_damaging(0.979) TCGA-55-1596-01 4 73149140 73149140 C T ADAMTS3 Missense_Mutation p.G1111S 0.14 tolerated_low_confidence(0.98) benign(0) TCGA-55-1596-01 5 125912853 125912853 T A ALDH7A1 Missense_Mutation p.I190F 0.57 deleterious(0) probably_damaging(0.951) TCGA-55-1596-01 5 140070879 140070879 C A HARS Missense_Mutation p.R4L 0.67 deleterious(0.04) benign(0.044) TCGA-55-1596-01 5 140557788 140557788 G C PCDHB8 Missense_Mutation p.R58T 0.15 tolerated_low_confidence(0.1) benign(0.012) TCGA-55-1596-01 5 141693948 141693948 G A SPRY4 Silent p.S265S 0.24 TCGA-55-1596-01 5 23524575 23524575 C A PRDM9 Nonsense_Mutation p.Y361* 0.41 TCGA-55-1596-01 5 26915812 26915812 T C CDH9 Missense_Mutation p.H150R 0.41 tolerated(0.08) probably_damaging(0.995) TCGA-55-1596-01 5 3599727 3599727 A T IRX1 Missense_Mutation p.E222V 0.10 deleterious(0) probably_damaging(0.95) TCGA-55-1596-01 6 128404945 128404945 G C PTPRK Missense_Mutation p.S497C 0.18 deleterious(0) probably_damaging(0.988) TCGA-55-1596-01 6 150322802 150322802 T C RAET1K Intron 0.11 TCGA-55-1596-01 6 15497370 15497370 G T JARID2 Missense_Mutation p.Q638H 0.36 deleterious(0) possibly_damaging(0.462) TCGA-55-1596-01 6 169621556 169621556 G C THBS2 Missense_Mutation p.L1114V 0.52 deleterious(0.03) possibly_damaging(0.856) TCGA-55-1596-01 6 26204930 26204930 C A HIST1H4E Missense_Mutation p.R20S 0.18 tolerated(0.06) unknown(0) TCGA-55-1596-01 6 26406352 26406352 C T BTN3A1 Missense_Mutation p.R101W 0.30 deleterious(0) probably_damaging(1) TCGA-55-1596-01 6 39869182 39869182 G C DAAM2 Silent p.R972R 0.33 TCGA-55-1596-01 6 55364093 55364093 C A HMGCLL1 Missense_Mutation p.V213L 0.19 deleterious(0.04) benign(0.028) TCGA-55-1596-01 6 74228856 74228856 A C EEF1A1 Silent p.A140A 0.48 TCGA-55-1596-01 6 93956601 93956601 C T EPHA7 Missense_Mutation p.E879K 0.64 tolerated(0.25) benign(0.082) TCGA-55-1596-01 7 11501681 11501681 C T THSD7A Missense_Mutation p.E820K 0.37 deleterious(0) possibly_damaging(0.854) TCGA-55-1596-01 7 11633039 11633039 G T THSD7A Silent p.P371P 0.28 TCGA-55-1596-01 7 136699878 136699878 G C CHRM2 Missense_Mutation p.W89S 0.34 deleterious(0) probably_damaging(1) TCGA-55-1596-01 7 57188680 57188680 A G ZNF479 Missense_Mutation p.C148R 0.49 deleterious(0.02) possibly_damaging(0.55) TCGA-55-1596-01 7 70255663 70255663 G A AUTS2 Missense_Mutation p.R1154H 0.10 deleterious(0) probably_damaging(0.998) TCGA-55-1596-01 7 70853343 70853343 A G WBSCR17 Missense_Mutation p.H182R 0.42 tolerated(0.29) probably_damaging(0.991) TCGA-55-1596-01 8 105459557 105459557 C A DPYS Missense_Mutation p.A200S 0.23 tolerated(0.22) benign(0.105) TCGA-55-1596-01 8 106813655 106813655 C G ZFPM2 Missense_Mutation p.L449V 0.10 tolerated(0.47) benign(0.242) TCGA-55-1596-01 8 108913209 108913209 C G RSPO2 3'UTR 0.18 TCGA-55-1596-01 8 110477349 110477349 G T PKHD1L1 Missense_Mutation p.C2763F 0.27 deleterious(0) probably_damaging(0.991) TCGA-55-1596-01 8 113246674 113246674 A G CSMD3 Silent p.L3554L 0.19 TCGA-55-1596-01 8 113254006 113254006 T A CSMD3 Nonsense_Mutation p.K3471* 0.57 TCGA-55-1596-01 8 120814149 120814149 G C TAF2 Missense_Mutation p.T226S 0.31 tolerated(0.13) possibly_damaging(0.781) TCGA-55-1596-01 8 142170817 142170817 G T DENND3 Missense_Mutation p.R348L 0.24 deleterious(0) possibly_damaging(0.815) TCGA-55-1596-01 8 61193624 61193624 T A CA8 Missense_Mutation p.E28V 0.50 tolerated(0.06) benign(0.348) TCGA-55-1596-01 8 68139538 68139538 T A ARFGEF1 Silent p.P1250P 0.27 TCGA-55-1596-01 8 70539460 70539460 C A SULF1 Silent p.P622P 0.23 TCGA-55-1596-01 8 70594557 70594557 A C SLCO5A1 Missense_Mutation p.H548Q 0.23 tolerated(0.49) benign(0.038) TCGA-55-1596-01 8 77763566 77763566 G T ZFHX4 Missense_Mutation p.W1470L 0.24 possibly_damaging(0.504) TCGA-55-1596-01 8 87591351 87591351 G C CNGB3 Missense_Mutation p.I637M 0.51 deleterious(0) benign(0.028) TCGA-55-1596-01 8 95265333 95265333 T C GEM Silent p.T113T 0.28 TCGA-55-1596-01 9 115965313 115965313 A G FKBP15 Silent p.Y109Y 0.62 TCGA-55-1596-01 9 21385084 21385084 A T IFNA2 Missense_Mutation p.M82K 0.23 deleterious(0.01) probably_damaging(0.983) TCGA-55-1596-01 9 32631306 32631306 G T TAF1L Missense_Mutation p.F1424L 0.62 deleterious(0.05) probably_damaging(0.999) TCGA-55-1596-01 9 35107649 35107649 C A FAM214B Missense_Mutation p.G208V 0.31 deleterious(0) possibly_damaging(0.562) TCGA-55-1596-01 9 35107650 35107650 C A FAM214B Missense_Mutation p.G208W 0.32 deleterious(0.02) benign(0.043) TCGA-55-1596-01 9 94973152 94973152 G A IARS Silent p.P1242P 0.51 TCGA-55-1596-01 9 96416742 96416742 C G PHF2 Silent p.S279S 0.52 TCGA-55-1596-01 X 151821395 151821395 A T GABRQ Missense_Mutation p.K517M 0.47 deleterious_low_confidence(0.04) benign(0.031) TCGA-55-1596-01 X 27839787 27839787 T A MAGEB10 Missense_Mutation p.L122M 0.89 deleterious(0.04) probably_damaging(0.981) TCGA-55-1596-01 X 50213554 50213554 C G DGKK RNA 0.89 TCGA-55-1596-01 X 50659489 50659489 G T BMP15 Missense_Mutation p.R354L 0.68 deleterious(0.02) possibly_damaging(0.73) TCGA-55-1596-01 X 73063798 73063798 T C XIST RNA 0.75 TCGA-55-1596-01 X 96330222 96330222 G C DIAPH2 Missense_Mutation p.E737Q 0.72 tolerated(0.11) benign(0.422) TCGA-55-5899-01 10 102256930 102256930 C A SEC31B Missense_Mutation p.A700S 0.41 tolerated(0.39) benign(0.009) TCGA-55-5899-01 10 102256931 102256931 C A SEC31B Missense_Mutation p.W699C 0.38 deleterious(0) probably_damaging(0.992) TCGA-55-5899-01 10 102739888 102739888 G A SEMA4G Missense_Mutation p.D380N 0.10 tolerated(0.26) benign(0.056) TCGA-55-5899-01 10 117704234 117704234 A T ATRNL1 Missense_Mutation p.T1362S 0.05 tolerated(1) benign(0) TCGA-55-5899-01 10 11894129 11894129 C - PROSER2 Frame_Shift_Del p.S20Afs*32 0.17 TCGA-55-5899-01 10 122630692 122630692 A T WDR11 Silent p.A435A 0.19 TCGA-55-5899-01 10 15103815 15103815 C G OLAH Missense_Mutation p.L139V 0.19 deleterious(0) possibly_damaging(0.884) TCGA-55-5899-01 10 25312405 25312405 G C THNSL1 Missense_Mutation p.D85H 0.25 deleterious(0) probably_damaging(0.962) TCGA-55-5899-01 10 29599112 29599112 C A LYZL1 Missense_Mutation p.N170K 0.49 tolerated(0.69) benign(0.063) TCGA-55-5899-01 10 43601846 43601846 G T RET Missense_Mutation p.R297L 0.16 tolerated(0.66) benign(0.071) TCGA-55-5899-01 10 79777351 79777351 C G POLR3A Missense_Mutation p.L471F 0.28 deleterious(0) probably_damaging(0.98) TCGA-55-5899-01 10 94648 94648 G A TUBB8 Missense_Mutation p.R62C 0.28 deleterious_low_confidence(0.01) probably_damaging(0.929) TCGA-55-5899-01 10 95116584 95116584 G A MYOF Nonsense_Mutation p.Q1048* 0.35 TCGA-55-5899-01 10 98762557 98762557 T A SLIT1 Missense_Mutation p.Q1353L 0.35 tolerated(0.14) possibly_damaging(0.864) TCGA-55-5899-01 11 107423852 107423852 C G ALKBH8 Missense_Mutation p.D193H 0.07 deleterious(0) probably_damaging(0.938) TCGA-55-5899-01 11 11314662 11314662 G T GALNT18 Missense_Mutation p.L531M 0.24 deleterious(0) possibly_damaging(0.868) TCGA-55-5899-01 11 1217678 1217678 C A MUC5AC RNA 0.44 TCGA-55-5899-01 11 12247751 12247751 G T MICAL2 Silent p.V574V 0.15 TCGA-55-5899-01 11 129751624 129751624 C G NFRKB Missense_Mutation p.R464P 0.60 tolerated(0.15) unknown(0) TCGA-55-5899-01 11 15199882 15199882 T A INSC Silent p.V203V 0.22 TCGA-55-5899-01 11 1605902 1605902 G T KRTAP5-1 Missense_Mutation p.S193Y 0.32 deleterious_low_confidence(0.03) unknown(0) TCGA-55-5899-01 11 1955021 1955021 C A TNNT3 Missense_Mutation p.A81D 0.40 tolerated(0.23) benign(0.283) TCGA-55-5899-01 11 32657332 32657332 T A CCDC73 Missense_Mutation p.L365F 0.37 tolerated(0.09) benign(0.117) TCGA-55-5899-01 11 32956717 32956717 A T QSER1 Missense_Mutation p.T1176S 0.42 tolerated(0.45) benign(0.077) TCGA-55-5899-01 11 33564735 33564735 C A KIAA1549L Silent p.L245L 0.48 TCGA-55-5899-01 11 40137725 40137725 C A LRRC4C Missense_Mutation p.G40C 0.27 deleterious(0.01) probably_damaging(0.956) TCGA-55-5899-01 11 48286048 48286048 G A OR4X1 Silent p.L212L 0.31 TCGA-55-5899-01 11 4936466 4936466 T A OR51G2 Missense_Mutation p.N143I 0.22 tolerated(0.21) benign(0.397) TCGA-55-5899-01 11 4967877 4967877 A T OR51A4 Missense_Mutation p.F152I 0.29 tolerated(0.53) benign(0.001) TCGA-55-5899-01 11 55135422 55135422 C A OR4A15 Missense_Mutation p.H21Q 0.24 deleterious_low_confidence(0) benign(0.006) TCGA-55-5899-01 11 55607017 55607017 C A OR5D16 Missense_Mutation p.P264T 0.24 deleterious(0.01) probably_damaging(0.99) TCGA-55-5899-01 11 55927735 55927735 C G OR8K5 Missense_Mutation p.R20P 0.21 deleterious_low_confidence(0.03) benign(0.002) TCGA-55-5899-01 11 56019896 56019896 G T OR5T3 Missense_Mutation p.G74V 0.25 deleterious(0.01) possibly_damaging(0.555) TCGA-55-5899-01 11 56128532 56128532 T A OR8J1 Silent p.T270T 0.20 TCGA-55-5899-01 11 56143335 56143335 C A OR8U1 Missense_Mutation p.P79H 0.39 deleterious(0) probably_damaging(0.911) TCGA-55-5899-01 11 57996273 57996273 A G OR10Q1 Silent p.T25T 0.23 TCGA-55-5899-01 11 5906247 5906247 G A OR52E4 Missense_Mutation p.C242Y 0.33 deleterious(0) benign(0.346) TCGA-55-5899-01 11 62159033 62159033 C T ASRGL1 Missense_Mutation p.S217L 0.26 deleterious(0) probably_damaging(1) TCGA-55-5899-01 11 62293042 62293042 G T AHNAK Silent p.P2949P 0.19 TCGA-55-5899-01 11 62459865 62459865 C G BSCL2 Silent p.A282A 0.15 TCGA-55-5899-01 11 6265580 6265580 G T CNGA4 Nonsense_Mutation p.G557* 0.38 TCGA-55-5899-01 11 62747367 62747367 C G SLC22A6 Missense_Mutation p.G364A 0.25 deleterious(0.01) probably_damaging(0.982) TCGA-55-5899-01 11 6292013 6292013 G C CCKBR Missense_Mutation p.R264P 0.55 tolerated(0.26) benign(0.006) TCGA-55-5899-01 11 64415750 64415750 C T NRXN2 Nonsense_Mutation p.W1115* 0.42 TCGA-55-5899-01 11 64815849 64815849 G T NAALADL1 Missense_Mutation p.R403S 0.13 deleterious(0) possibly_damaging(0.771) TCGA-55-5899-01 11 67077349 67077349 T A SSH3 Missense_Mutation p.L440Q 0.40 deleterious(0.02) probably_damaging(0.997) TCGA-55-5899-01 11 6943214 6943214 C A OR2D3 Missense_Mutation p.H328N 0.37 tolerated(0.44) benign(0.021) TCGA-55-5899-01 11 7059877 7059877 G A NLRP14 Silent p.E20E 0.34 TCGA-55-5899-01 11 7083652 7083652 G T NLRP14 Missense_Mutation p.G965W 0.21 deleterious(0) probably_damaging(1) TCGA-55-5899-01 11 73748715 73748715 G A C2CD3 Nonsense_Mutation p.Q1897* 0.21 TCGA-55-5899-01 11 74911421 74911421 G T SLCO2B1 Missense_Mutation p.M584I 0.20 deleterious(0.02) benign(0.012) TCGA-55-5899-01 11 76372429 76372429 C A LRRC32 Missense_Mutation p.G70C 0.21 tolerated(0.14) possibly_damaging(0.895) TCGA-55-5899-01 11 85722153 85722153 G A PICALM Nonsense_Mutation p.Q229* 0.14 TCGA-55-5899-01 11 85722156 85722156 T C PICALM Missense_Mutation p.N228D 0.16 tolerated(0.17) benign(0.006) TCGA-55-5899-01 12 108145425 108145425 G C PRDM4 Missense_Mutation p.S298C 0.24 tolerated(0.17) benign(0.293) TCGA-55-5899-01 12 114836423 114836423 G T TBX5 Missense_Mutation p.F155L 0.56 deleterious(0.01) probably_damaging(0.947) TCGA-55-5899-01 12 133434066 133434066 G A CHFR Missense_Mutation p.R343C 0.84 deleterious(0.02) probably_damaging(0.995) TCGA-55-5899-01 12 15713185 15713185 C - PTPRO Frame_Shift_Del p.L896Ffs*14 0.41 TCGA-55-5899-01 12 26636704 26636704 T C ITPR2 Missense_Mutation p.K1980R 0.25 tolerated(0.28) benign(0.003) TCGA-55-5899-01 12 26809337 26809337 A T ITPR2 Nonsense_Mutation p.C779* 0.15 TCGA-55-5899-01 12 28603339 28603339 A T CCDC91 Silent p.V304V 0.39 TCGA-55-5899-01 12 29614942 29614942 C G OVCH1 Splice_Site p.X709_splice 0.42 TCGA-55-5899-01 12 34179132 34179132 A T ALG10 Missense_Mutation p.Q235L 0.24 tolerated(0.71) benign(0.002) TCGA-55-5899-01 12 427541 427541 C T KDM5A Missense_Mutation p.M876I 0.30 tolerated(0.11) benign(0.001) TCGA-55-5899-01 12 49231325 49231325 C T DDX23 Silent p.K245K 0.33 TCGA-55-5899-01 12 52282534 52282534 C A ANKRD33 Missense_Mutation p.Q110K 0.60 tolerated(0.92) benign(0.008) TCGA-55-5899-01 12 55523903 55523903 C A OR9K2 Silent p.I117I 0.63 TCGA-55-5899-01 12 56487890 56487890 C T ERBB3 Nonsense_Mutation p.R541* 0.26 TCGA-55-5899-01 12 5672696 5672696 C A ANO2 Missense_Mutation p.M922I 0.62 tolerated(0.23) benign(0.106) TCGA-55-5899-01 12 57569264 57569264 G A LRP1 Missense_Mutation p.G1190D 0.67 probably_damaging(0.998) TCGA-55-5899-01 12 70004114 70004114 G T LRRC10 Missense_Mutation p.L169M 0.56 deleterious(0) probably_damaging(1) TCGA-55-5899-01 12 70933485 70933485 G C PTPRB Missense_Mutation p.P1900A 0.33 deleterious(0.01) possibly_damaging(0.77) TCGA-55-5899-01 12 73046138 73046138 A T TRHDE Silent p.T859T 0.57 TCGA-55-5899-01 12 77423929 77423929 C T E2F7 Silent p.V522V 0.71 TCGA-55-5899-01 12 78574754 78574754 C A NAV3 Missense_Mutation p.S1852Y 0.75 deleterious(0.01) probably_damaging(0.999) TCGA-55-5899-01 13 101728270 101728270 C T NALCN Missense_Mutation p.G1303D 0.52 deleterious(0) probably_damaging(1) TCGA-55-5899-01 13 28368064 28368064 G T GSX1 Silent p.R258R 0.65 TCGA-55-5899-01 13 31725161 31725161 C T HSPH1 Missense_Mutation p.M277I 0.42 deleterious(0) benign(0.101) TCGA-55-5899-01 13 41373228 41373228 G C SLC25A15 Missense_Mutation p.D31H 0.38 deleterious(0) probably_damaging(0.992) TCGA-55-5899-01 13 43839584 43839584 C A ENOX1 Missense_Mutation p.G521C 0.69 tolerated(0.12) benign(0) TCGA-55-5899-01 13 53024757 53024757 C A VPS36 5'UTR 0.83 TCGA-55-5899-01 13 53418996 53418996 C A PCDH8 Missense_Mutation p.G971V 0.80 tolerated(0.11) probably_damaging(0.962) TCGA-55-5899-01 13 53422643 53422643 A G PCDH8 5'UTR 0.07 TCGA-55-5899-01 13 67802318 67802318 A T PCDH9 Silent p.I85I 0.23 TCGA-55-5899-01 13 73348154 73348154 C G DIS3 Missense_Mutation p.R344T 0.24 deleterious(0.02) benign(0.018) TCGA-55-5899-01 13 86369467 86369467 G C SLITRK6 Missense_Mutation p.H393D 0.46 deleterious(0.01) possibly_damaging(0.843) TCGA-55-5899-01 13 94482724 94482724 C A GPC6 Missense_Mutation p.R213S 0.70 deleterious(0) probably_damaging(0.961) TCGA-55-5899-01 14 100847475 100847475 G A WDR25 Missense_Mutation p.D72N 0.48 tolerated(0.16) benign(0.004) TCGA-55-5899-01 14 100996231 100996231 G T WDR25 Silent p.R496R 0.32 TCGA-55-5899-01 14 101509384 101509384 T C MIR1185-1 RNA 0.15 TCGA-55-5899-01 14 101521810 101521810 G T MIR485 RNA 0.38 TCGA-55-5899-01 14 105410206 105410206 G T AHNAK2 Missense_Mutation p.T3861K 0.45 benign(0) TCGA-55-5899-01 14 19574250 19574250 G T POTEG Missense_Mutation p.G436V 0.11 deleterious(0.01) possibly_damaging(0.696) TCGA-55-5899-01 14 20248812 20248812 G A OR4M1 Missense_Mutation p.E111K 0.11 tolerated(0.06) probably_damaging(0.999) TCGA-55-5899-01 14 20585717 20585717 C A OR4K17 Missense_Mutation p.S51Y 0.40 deleterious(0) benign(0.209) TCGA-55-5899-01 14 22294115 22294115 C T TRAV10 Silent p.F73F 0.20 TCGA-55-5899-01 14 23397745 23397745 C A PRMT5 Missense_Mutation p.G64C 0.35 tolerated(0.09) benign(0.141) TCGA-55-5899-01 14 23885271 23885271 G A MYH7 Missense_Mutation p.A1632V 0.43 deleterious(0.03) probably_damaging(0.987) TCGA-55-5899-01 14 32563472 32563472 A T ARHGAP5 Silent p.P1199P 0.39 TCGA-55-5899-01 14 33015819 33015819 C T AKAP6 Silent p.L654L 0.25 TCGA-55-5899-01 14 39717036 39717036 G T MIA2 Missense_Mutation p.D420Y 0.38 deleterious(0) probably_damaging(0.942) TCGA-55-5899-01 14 51111641 51111641 C G SAV1 Missense_Mutation p.W209C 0.15 deleterious(0) probably_damaging(0.971) TCGA-55-5899-01 14 51378535 51378535 C A PYGL Missense_Mutation p.A628S 0.33 deleterious(0.04) possibly_damaging(0.624) TCGA-55-5899-01 14 52735003 52735003 C A PTGDR Missense_Mutation p.S157R 0.40 tolerated(0.11) possibly_damaging(0.635) TCGA-55-5899-01 14 56116524 56116526 AAG - KTN1 In_Frame_Del p.K801del 0.10 TCGA-55-5899-01 14 60591648 60591648 G A PCNXL4 Missense_Mutation p.C686Y 0.19 tolerated(0.9) benign(0.002) TCGA-55-5899-01 14 60976401 60976401 C A SIX6 Missense_Mutation p.H95Q 0.32 deleterious(0) probably_damaging(0.996) TCGA-55-5899-01 14 61180536 61180536 T A SIX4 Silent p.A645A 0.49 TCGA-55-5899-01 14 65054946 65054946 G T PPP1R36 Missense_Mutation p.V339L 0.35 tolerated(0.42) benign(0.005) TCGA-55-5899-01 14 88406293 88406293 C A GALC Nonsense_Mutation p.E623* 0.15 TCGA-55-5899-01 14 90455297 90455297 G T TDP1 Missense_Mutation p.V394F 0.26 deleterious(0) possibly_damaging(0.905) TCGA-55-5899-01 14 91626633 91626633 G A C14orf159 5'UTR 0.22 TCGA-55-5899-01 14 92600598 92600598 G A CPSF2 Missense_Mutation p.R105Q 0.35 tolerated(0.14) benign(0.33) TCGA-55-5899-01 14 93962804 93962804 G T UNC79 Missense_Mutation p.V77F 0.37 deleterious(0) probably_damaging(0.999) TCGA-55-5899-01 14 95081191 95081191 G A SERPINA3 Missense_Mutation p.G138E 0.21 deleterious(0) probably_damaging(0.996) TCGA-55-5899-01 14 95932316 95932316 G C SYNE3 Silent p.A193A 0.18 TCGA-55-5899-01 15 100636612 100636612 C A ADAMTS17 Missense_Mutation p.G696C 0.65 deleterious(0) probably_damaging(0.999) TCGA-55-5899-01 15 101597147 101597147 C A LRRK1 Silent p.A1473A 0.30 TCGA-55-5899-01 15 30008950 30008950 C T TJP1 Missense_Mutation p.R1356Q 0.64 tolerated_low_confidence(0.07) possibly_damaging(0.701) TCGA-55-5899-01 15 31796019 31796019 A T OTUD7A Missense_Mutation p.V292E 0.36 tolerated(0.07) probably_damaging(0.999) TCGA-55-5899-01 15 32460267 32460267 G T CHRNA7 Missense_Mutation p.A402S 0.25 tolerated(0.87) benign(0.048) TCGA-55-5899-01 15 40512823 40512823 G A BUB1B Missense_Mutation p.E1006K 0.31 tolerated(0.85) benign(0.02) TCGA-55-5899-01 15 40707610 40707610 G A IVD Missense_Mutation p.A300T 0.29 deleterious(0) possibly_damaging(0.664) TCGA-55-5899-01 15 48414089 48414089 G C SLC24A5 Missense_Mutation p.E53Q 0.26 tolerated(0.41) benign(0.229) TCGA-55-5899-01 15 63073381 63073381 G T TLN2 Missense_Mutation p.D1853Y 0.29 deleterious(0) probably_damaging(0.989) TCGA-55-5899-01 15 74426316 74426316 C G ISLR2 Missense_Mutation p.S407R 0.70 deleterious(0) probably_damaging(0.992) TCGA-55-5899-01 15 89399113 89399113 T A ACAN Silent p.A1099A 0.39 TCGA-55-5899-01 16 10721632 10721632 G A TEKT5 Silent p.I422I 0.30 TCGA-55-5899-01 16 1709952 1709952 G C CRAMP1L Silent p.T767T 0.62 TCGA-55-5899-01 16 18806799 18806799 T C ARL6IP1 Missense_Mutation p.E132G 0.13 tolerated(0.11) benign(0.037) TCGA-55-5899-01 16 2030675 2030675 C T NOXO1 Missense_Mutation p.V69I 0.67 tolerated(0.45) benign(0.013) TCGA-55-5899-01 16 24202429 24202429 G T PRKCB Missense_Mutation p.G581C 0.61 deleterious(0.01) possibly_damaging(0.449) TCGA-55-5899-01 16 48249115 48249115 G A ABCC11 Silent p.I364I 0.19 TCGA-55-5899-01 16 56855440 56855440 G T NUP93 Missense_Mutation p.V197L 0.26 tolerated(0.28) benign(0.012) TCGA-55-5899-01 16 57562734 57562734 C T CCDC102A Missense_Mutation p.R119H 0.45 deleterious(0) probably_damaging(0.999) TCGA-55-5899-01 16 65026828 65026828 T C CDH11 Silent p.E211E 0.14 TCGA-55-5899-01 16 67709851 67709851 T A GFOD2 Missense_Mutation p.N122I 0.15 deleterious(0) possibly_damaging(0.89) TCGA-55-5899-01 16 67761665 67761665 C G RANBP10 Missense_Mutation p.E537Q 0.25 tolerated(0.27) benign(0.129) TCGA-55-5899-01 16 68002416 68002416 C T SLC12A4 Missense_Mutation p.A48T 0.50 tolerated_low_confidence(0.42) unknown(0) TCGA-55-5899-01 16 68014020 68014020 C T DPEP3 Missense_Mutation p.M113I 0.60 deleterious(0) probably_damaging(0.975) TCGA-55-5899-01 16 68014111 68014111 G T DPEP3 Missense_Mutation p.P83Q 0.48 deleterious(0.02) possibly_damaging(0.779) TCGA-55-5899-01 16 68026050 68026050 A G DPEP2 Missense_Mutation p.L146P 0.18 deleterious(0) probably_damaging(0.936) TCGA-55-5899-01 16 71417337 71417337 C A CALB2 Missense_Mutation p.T156N 0.42 deleterious(0) probably_damaging(0.998) TCGA-55-5899-01 16 74982429 74982429 G A WDR59 Silent p.L145L 0.24 TCGA-55-5899-01 17 10398275 10398275 C T MYH1 Silent p.K1813K 0.28 TCGA-55-5899-01 17 10409210 10409210 C A MYH1 Missense_Mutation p.R698M 0.75 deleterious(0.01) possibly_damaging(0.646) TCGA-55-5899-01 17 21319542 21319542 G T KCNJ12 Silent p.V296V 0.19 TCGA-55-5899-01 17 27030878 27030878 T C PROCA1 Missense_Mutation p.T237A 0.09 tolerated(0.15) benign(0.023) TCGA-55-5899-01 17 27493223 27493223 C T MYO18A Missense_Mutation p.E246K 0.29 deleterious(0.01) benign(0.426) TCGA-55-5899-01 17 28651849 28651849 G T TMIGD1 Missense_Mutation p.H209N 0.36 deleterious(0.01) possibly_damaging(0.624) TCGA-55-5899-01 17 30696361 30696361 G T ZNF207 Silent p.R404R 0.48 TCGA-55-5899-01 17 35872430 35872430 T C DUSP14 Missense_Mutation p.I19T 0.09 tolerated(0.18) benign(0.002) TCGA-55-5899-01 17 37226180 37226180 C A PLXDC1 Missense_Mutation p.A438S 0.36 deleterious(0.04) probably_damaging(0.998) TCGA-55-5899-01 17 40345091 40345091 C T GHDC Intron 0.22 TCGA-55-5899-01 17 40666370 40666370 G A ATP6V0A1 Missense_Mutation p.G772E 0.34 deleterious(0) probably_damaging(1) TCGA-55-5899-01 17 40818413 40818413 C T TUBG2 Nonsense_Mutation p.Q357* 0.11 TCGA-55-5899-01 17 41142924 41142924 G T RUNDC1 Missense_Mutation p.A345S 0.41 deleterious(0.01) benign(0.083) TCGA-55-5899-01 17 47656735 47656735 C A NXPH3 3'UTR 0.50 TCGA-55-5899-01 17 4804508 4804508 G C C17orf107 3'UTR 0.12 TCGA-55-5899-01 17 49713356 49713356 G T CA10 Missense_Mutation p.L217I 0.38 tolerated(0.29) benign(0.285) TCGA-55-5899-01 17 51900706 51900706 G T KIF2B Silent p.S104S 0.44 TCGA-55-5899-01 17 56164475 56164475 C T DYNLL2 Silent p.I8I 0.46 TCGA-55-5899-01 17 60349330 60349330 C A TBC1D3P2 RNA 0.15 TCGA-55-5899-01 17 66425071 66425071 C G WIPI1 Missense_Mutation p.Q324H 0.33 deleterious(0.03) probably_damaging(0.968) TCGA-55-5899-01 17 72741181 72741181 A G RAB37 Missense_Mutation p.K180R 0.12 deleterious(0.02) possibly_damaging(0.631) TCGA-55-5899-01 17 7578474 7578475 CG A TP53 Frame_Shift_Del p.P152Lfs*18 0.52 TCGA-55-5899-01 17 79205613 79205613 G C ENTHD2 Intron 0.13 TCGA-55-5899-01 17 79612618 79612618 T C TSPAN10 Missense_Mutation p.C213R 0.38 deleterious(0) possibly_damaging(0.588) TCGA-55-5899-01 17 79612619 79612619 G T TSPAN10 Missense_Mutation p.C213F 0.38 deleterious(0) possibly_damaging(0.506) TCGA-55-5899-01 18 13387586 13387586 G T LDLRAD4 5'UTR 0.19 TCGA-55-5899-01 18 21229076 21229076 C A ANKRD29 Missense_Mutation p.G35C 0.31 deleterious(0) probably_damaging(1) TCGA-55-5899-01 18 22806774 22806774 T A ZNF521 Missense_Mutation p.M370L 0.45 tolerated(1) benign(0.088) TCGA-55-5899-01 18 28711632 28711632 C T DSC1 Silent p.K804K 0.50 TCGA-55-5899-01 18 28934526 28934526 A T DSG1 Silent p.T789T 0.42 TCGA-55-5899-01 18 30803087 30803087 C T CCDC178 Missense_Mutation p.A639T 0.16 tolerated(0.11) benign(0.109) TCGA-55-5899-01 18 43221223 43221223 C A SLC14A2 Missense_Mutation p.S347R 0.28 deleterious(0) possibly_damaging(0.555) TCGA-55-5899-01 18 47802296 47802296 C A MBD1 Missense_Mutation p.C191F 0.51 deleterious(0) probably_damaging(1) TCGA-55-5899-01 18 48573354 48573354 A C SMAD4 5'UTR 0.48 TCGA-55-5899-01 18 63548088 63548088 C A CDH7 Silent p.L772L 0.27 TCGA-55-5899-01 18 6973142 6973142 T C LAMA1 Missense_Mutation p.T2230A 0.64 tolerated(0.27) possibly_damaging(0.803) TCGA-55-5899-01 19 1004961 1004961 G A GRIN3B Silent p.L487L 0.71 TCGA-55-5899-01 19 10600330 10600330 C A KEAP1 Missense_Mutation p.G509W 0.65 deleterious(0) probably_damaging(1) TCGA-55-5899-01 19 10800252 10800252 C T ILF3 3'UTR 0.31 TCGA-55-5899-01 19 13365936 13365936 G A CACNA1A Silent p.A1576A 0.17 TCGA-55-5899-01 19 15905665 15905665 G T OR10H5 Silent p.P269P 0.62 TCGA-55-5899-01 19 22362793 22362793 C A ZNF676 Missense_Mutation p.V576F 0.53 tolerated(0.1) benign(0) TCGA-55-5899-01 19 2434013 2434013 C A LMNB2 Silent p.L431L 0.58 TCGA-55-5899-01 19 31768533 31768533 C G TSHZ3 Missense_Mutation p.L722F 0.26 deleterious(0) probably_damaging(0.999) TCGA-55-5899-01 19 38995479 38995479 C G RYR1 Nonsense_Mutation p.S2720* 0.42 TCGA-55-5899-01 19 40093182 40093182 C T LGALS13 5'UTR 0.36 TCGA-55-5899-01 19 46733709 46733709 C A IGFL1 Missense_Mutation p.F86L 0.69 tolerated(0.4) benign(0.003) TCGA-55-5899-01 19 5032934 5032934 C T KDM4B Silent p.P11P 0.69 TCGA-55-5899-01 19 51522352 51522352 G C KLK10 Missense_Mutation p.S12C 0.79 deleterious_low_confidence(0.02) possibly_damaging(0.819) TCGA-55-5899-01 19 51561823 51561823 G C KLK13 Missense_Mutation p.T206R 0.34 tolerated(0.06) possibly_damaging(0.784) TCGA-55-5899-01 19 855664 855664 G T ELANE Missense_Mutation p.W156L 0.77 deleterious(0) probably_damaging(0.999) TCGA-55-5899-01 1 10714191 10714191 G A CASZ1 Silent p.A641A 0.63 TCGA-55-5899-01 1 107691419 107691419 G T NTNG1 Silent p.P68P 0.26 TCGA-55-5899-01 1 107691420 107691420 G T NTNG1 Missense_Mutation p.D69Y 0.27 deleterious(0) probably_damaging(0.975) TCGA-55-5899-01 1 109200156 109200156 T C HENMT1 Missense_Mutation p.T23A 0.33 tolerated(0.39) benign(0.017) TCGA-55-5899-01 1 110765692 110765692 G T KCNC4 Missense_Mutation p.R262L 0.35 tolerated(0.67) benign(0.001) TCGA-55-5899-01 1 114454829 114454829 G A DCLRE1B 3'UTR 0.45 TCGA-55-5899-01 1 12726347 12726347 A G AADACL4 Silent p.P275P 0.33 TCGA-55-5899-01 1 142803425 142803425 C G RP11-423O2.5 RNA 0.12 TCGA-55-5899-01 1 145116003 145116003 A G SEC22B RNA 0.09 TCGA-55-5899-01 1 147231223 147231223 C G GJA5 Missense_Mutation p.E42Q 0.29 deleterious(0) probably_damaging(0.995) TCGA-55-5899-01 1 152276642 152276642 C A FLG Missense_Mutation p.G3574C 0.21 unknown(0) TCGA-55-5899-01 1 152284648 152284648 C A FLG Missense_Mutation p.G905V 0.39 probably_damaging(0.977) TCGA-55-5899-01 1 152284712 152284712 G T FLG Missense_Mutation p.R884S 0.37 possibly_damaging(0.859) TCGA-55-5899-01 1 152331282 152331282 T G FLG2 Missense_Mutation p.T27P 0.41 unknown(0) TCGA-55-5899-01 1 154027277 154027277 T C NUP210L Missense_Mutation p.K1091R 0.11 deleterious(0.02) probably_damaging(0.93) TCGA-55-5899-01 1 155642500 155642500 T C YY1AP1 Missense_Mutation p.Q283R 0.20 tolerated(0.19) benign(0.049) TCGA-55-5899-01 1 156811945 156811945 C A INSRR Missense_Mutation p.R1119L 0.33 deleterious(0) probably_damaging(1) TCGA-55-5899-01 1 157666159 157666159 G T FCRL3 Intron 0.38 TCGA-55-5899-01 1 159176146 159176146 T A DARC Missense_Mutation p.L308Q 0.39 deleterious(0.03) probably_damaging(0.983) TCGA-55-5899-01 1 159409741 159409741 C T OR10J1 Missense_Mutation p.H65Y 0.18 tolerated(0.22) benign(0.232) TCGA-55-5899-01 1 16091649 16091649 G A FBLIM1 Silent p.A57A 0.42 TCGA-55-5899-01 1 183920145 183920145 C A COLGALT2 Nonsense_Mutation p.G378* 0.24 TCGA-55-5899-01 1 192613467 192613467 G C RGS13 Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-55-5899-01 1 196794686 196794686 T C CFHR1 Silent p.P46P 0.17 TCGA-55-5899-01 1 196953241 196953241 C A CFHR5 Missense_Mutation p.S135Y 0.21 deleterious(0) probably_damaging(0.986) TCGA-55-5899-01 1 197070516 197070516 T A ASPM Missense_Mutation p.Q2622L 0.42 tolerated(0.69) benign(0.02) TCGA-55-5899-01 1 197111524 197111524 C G ASPM Missense_Mutation p.V620L 0.23 tolerated(0.19) benign(0.002) TCGA-55-5899-01 1 201185815 201185815 C T IGFN1 Missense_Mutation p.R3177W 0.48 possibly_damaging(0.479) TCGA-55-5899-01 1 201869186 201869186 C T LMOD1 Missense_Mutation p.D319N 0.21 probably_damaging(0.991) TCGA-55-5899-01 1 2077475 2077475 A G PRKCZ Missense_Mutation p.M188V 0.26 tolerated(0.23) benign(0.005) TCGA-55-5899-01 1 216138678 216138678 C A USH2A Silent p.G2367G 0.23 TCGA-55-5899-01 1 216138679 216138679 C A USH2A Missense_Mutation p.G2367V 0.24 probably_damaging(0.997) TCGA-55-5899-01 1 222801057 222801057 G T MIA3 Missense_Mutation p.M165I 0.42 tolerated(0.54) benign(0.004) TCGA-55-5899-01 1 222833533 222833533 A T MIA3 Missense_Mutation p.N1664Y 0.64 deleterious(0) probably_damaging(0.999) TCGA-55-5899-01 1 226075725 226075725 G T LEFTY1 Silent p.A86A 0.30 TCGA-55-5899-01 1 232600588 232600588 C G SIPA1L2 Missense_Mutation p.V940L 0.21 deleterious(0.02) benign(0.001) TCGA-55-5899-01 1 232600610 232600610 G A SIPA1L2 Silent p.I932I 0.18 TCGA-55-5899-01 1 236760239 236760239 C A HEATR1 Missense_Mutation p.R214M 0.52 deleterious(0) probably_damaging(0.997) TCGA-55-5899-01 1 237948014 237948014 G T RYR2 Missense_Mutation p.M4334I 0.32 benign(0.247) TCGA-55-5899-01 1 238048073 238048073 G A ZP4 Silent p.L462L 0.21 TCGA-55-5899-01 1 241094038 241094038 C A RGS7 Nonsense_Mutation p.E122* 0.49 TCGA-55-5899-01 1 242030245 242030245 A T EXO1 Silent p.S385S 0.52 TCGA-55-5899-01 1 245848894 245848894 C A KIF26B Missense_Mutation p.P870H 0.50 deleterious(0) unknown(0) TCGA-55-5899-01 1 245848895 245848895 C A KIF26B Silent p.P870P 0.50 TCGA-55-5899-01 1 246811078 246811078 G T CNST Missense_Mutation p.E525D 0.47 deleterious(0.02) possibly_damaging(0.648) TCGA-55-5899-01 1 247587935 247587935 G T NLRP3 Missense_Mutation p.S397I 0.51 tolerated(0.05) benign(0.066) TCGA-55-5899-01 1 247921054 247921054 C A OR1C1 Nonsense_Mutation p.G219* 0.29 TCGA-55-5899-01 1 248636689 248636689 C A OR2T3 Missense_Mutation p.A13E 0.31 tolerated(0.68) benign(0.01) TCGA-55-5899-01 1 2530196 2530196 G T MMEL1 Missense_Mutation p.L359I 0.39 tolerated(0.07) possibly_damaging(0.868) TCGA-55-5899-01 1 2538455 2538455 C T MMEL1 Missense_Mutation p.G197R 0.46 tolerated(0.09) probably_damaging(1) TCGA-55-5899-01 1 27092959 27092959 A CT ARID1A Frame_Shift_Ins p.S964Lfs*43 0.27 TCGA-55-5899-01 1 3103017 3103017 G T PRDM16 Missense_Mutation p.K122N 0.37 tolerated(0.09) benign(0.005) TCGA-55-5899-01 1 3519121 3519121 G A MEGF6 Missense_Mutation p.R59C 0.63 deleterious(0) probably_damaging(0.915) TCGA-55-5899-01 1 42046279 42046279 C G HIVEP3 Missense_Mutation p.R1397T 0.30 probably_damaging(0.996) TCGA-55-5899-01 1 45923457 45923457 T C TESK2 Translation_Start_Site p.M1? 0.23 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-55-5899-01 1 47024441 47024441 C G MKNK1 Missense_Mutation p.A402P 0.32 deleterious(0) possibly_damaging(0.467) TCGA-55-5899-01 1 6266722 6266722 G C RNF207 Missense_Mutation p.D43H 0.49 tolerated(0.12) benign(0.1) TCGA-55-5899-01 1 67147825 67147825 C A SGIP1 Missense_Mutation p.P363H 0.59 deleterious_low_confidence(0.03) possibly_damaging(0.893) TCGA-55-5899-01 1 67185020 67185020 C A SGIP1 Missense_Mutation p.D558E 0.38 tolerated(0.08) benign(0.013) TCGA-55-5899-01 1 86524848 86524848 C T COL24A1 Missense_Mutation p.G588R 0.27 deleterious(0) probably_damaging(1) TCGA-55-5899-01 1 92442839 92442839 G T BRDT Missense_Mutation p.K286N 0.49 deleterious(0) probably_damaging(0.999) TCGA-55-5899-01 1 97236293 97236293 A G PTBP2 Silent p.A106A 0.60 TCGA-55-5899-01 20 21329033 21329033 C A XRN2 Missense_Mutation p.L610I 0.39 tolerated(0.3) benign(0.348) TCGA-55-5899-01 20 23433431 23433431 C A CST11 Missense_Mutation p.W6C 0.37 deleterious(0.04) probably_damaging(0.95) TCGA-55-5899-01 20 23433432 23433432 C A CST11 Missense_Mutation p.W6L 0.36 deleterious(0.02) possibly_damaging(0.82) TCGA-55-5899-01 20 23807252 23807252 C A CST2 Missense_Mutation p.A16S 0.53 tolerated(0.57) benign(0.099) TCGA-55-5899-01 20 2636664 2636664 G A NOP56 Missense_Mutation p.E332K 0.43 deleterious(0) probably_damaging(0.992) TCGA-55-5899-01 20 30602724 30602724 C A CCM2L Silent p.I16I 0.27 TCGA-55-5899-01 20 30686834 30686834 C A HCK Missense_Mutation p.A425D 0.22 deleterious(0) possibly_damaging(0.851) TCGA-55-5899-01 20 30804817 30804817 G A POFUT1 Intron 0.22 TCGA-55-5899-01 20 33582124 33582124 G A MYH7B Missense_Mutation p.E916K 0.22 probably_damaging(0.912) TCGA-55-5899-01 20 3652068 3652068 C A ADAM33 Missense_Mutation p.G661W 0.36 deleterious(0) probably_damaging(1) TCGA-55-5899-01 20 40081486 40081486 T A CHD6 Missense_Mutation p.S1073C 0.23 deleterious(0) probably_damaging(0.986) TCGA-55-5899-01 20 42213633 42213633 G A SGK2 Missense_Mutation p.D421N 0.48 tolerated(0.21) benign(0.263) TCGA-55-5899-01 20 42907638 42907638 C A GDAP1L1 Missense_Mutation p.L268I 0.22 tolerated(0.19) possibly_damaging(0.893) TCGA-55-5899-01 20 43399960 43399960 G A RIMS4 Silent p.H65H 0.45 TCGA-55-5899-01 20 45131272 45131272 G T ZNF334 Missense_Mutation p.P236T 0.25 tolerated(0.09) benign(0.005) TCGA-55-5899-01 20 45353979 45353979 G T SLC2A10 Missense_Mutation p.V102F 0.21 deleterious(0) possibly_damaging(0.879) TCGA-55-5899-01 20 45905074 45905074 G A ZMYND8 Silent p.F488F 0.21 TCGA-55-5899-01 20 4771142 4771142 G C RASSF2 Missense_Mutation p.I164M 0.22 tolerated(0.07) benign(0.098) TCGA-55-5899-01 20 51872436 51872436 C T TSHZ2 Silent p.S813S 0.26 TCGA-55-5899-01 20 55108465 55108465 C G FAM209B Missense_Mutation p.S23C 0.21 tolerated(0.05) probably_damaging(0.993) TCGA-55-5899-01 20 57042210 57042210 C A APCDD1L Missense_Mutation p.R231S 0.43 deleterious(0.02) possibly_damaging(0.703) TCGA-55-5899-01 20 61594722 61594722 G A SLC17A9 Splice_Site p.X242_splice 0.31 TCGA-55-5899-01 21 18919473 18919473 C T CXADR Silent p.L58L 0.31 TCGA-55-5899-01 21 45994266 45994266 C A KRTAP10-4 Missense_Mutation p.Q211K 0.27 tolerated(0.22) unknown(0) TCGA-55-5899-01 21 47957423 47957423 C A DIP2A Missense_Mutation p.S591Y 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-55-5899-01 21 47974083 47974083 G T DIP2A Missense_Mutation p.G1011V 0.68 deleterious(0.01) benign(0.004) TCGA-55-5899-01 22 18363985 18363985 G T MICAL3 Intron 0.33 TCGA-55-5899-01 22 24515486 24515486 G A CABIN1 Missense_Mutation p.D1485N 0.37 deleterious(0.01) benign(0.152) TCGA-55-5899-01 22 29454768 29454768 C G C22orf31 Missense_Mutation p.V279L 0.27 tolerated_low_confidence(0.29) benign(0.039) TCGA-55-5899-01 2 11780633 11780633 G A GREB1 3'UTR 0.33 TCGA-55-5899-01 2 119739028 119739028 G C MARCO Missense_Mutation p.M270I 0.18 tolerated(0.16) possibly_damaging(0.708) TCGA-55-5899-01 2 138169178 138169178 G T THSD7B Splice_Site p.X899_splice 0.29 TCGA-55-5899-01 2 141093288 141093288 C T LRP1B Silent p.L4004L 0.17 TCGA-55-5899-01 2 143743548 143743548 G A KYNU Missense_Mutation p.G287D 0.18 deleterious(0) probably_damaging(0.997) TCGA-55-5899-01 2 152977303 152977303 T C STAM2 Missense_Mutation p.T455A 0.42 tolerated_low_confidence(0.2) benign(0.001) TCGA-55-5899-01 2 158178194 158178194 C T ERMN Silent p.K161K 0.44 TCGA-55-5899-01 2 160080800 160080800 C T TANC1 Missense_Mutation p.R1246W 0.05 deleterious(0) probably_damaging(1) TCGA-55-5899-01 2 162875299 162875299 A T DPP4 Missense_Mutation p.C454S 0.26 deleterious(0.01) probably_damaging(1) TCGA-55-5899-01 2 163051221 163051221 G T FAP Silent p.R480R 0.30 TCGA-55-5899-01 2 163693092 163693092 C G KCNH7 Missense_Mutation p.G88R 0.16 deleterious(0) probably_damaging(0.998) TCGA-55-5899-01 2 165953895 165953895 G T SCN3A Missense_Mutation p.T1369K 0.24 tolerated(0.1) benign(0.152) TCGA-55-5899-01 2 165984542 165984542 C G SCN3A Missense_Mutation p.D998H 0.26 deleterious(0) probably_damaging(1) TCGA-55-5899-01 2 166245307 166245307 G A SCN2A Missense_Mutation p.G1664D 0.18 deleterious(0) benign(0.106) TCGA-55-5899-01 2 166785655 166785655 C G TTC21B Missense_Mutation p.C459S 0.10 tolerated(0.21) benign(0.017) TCGA-55-5899-01 2 166848855 166848855 C A SCN1A Missense_Mutation p.G1644C 0.43 deleterious(0) probably_damaging(1) TCGA-55-5899-01 2 168103300 168103300 G A XIRP2 Missense_Mutation p.E1800K 0.25 benign(0.329) TCGA-55-5899-01 2 169869891 169869891 C T ABCB11 Missense_Mutation p.D94N 0.24 tolerated(0.13) possibly_damaging(0.904) TCGA-55-5899-01 2 169869897 169869897 C T ABCB11 Missense_Mutation p.D92N 0.24 tolerated(0.83) benign(0.024) TCGA-55-5899-01 2 176948269 176948269 A G EVX2 Missense_Mutation p.L79P 0.20 tolerated(0.13) benign(0.007) TCGA-55-5899-01 2 179596608 179596608 G T TTN Missense_Mutation p.P5665H 0.16 TCGA-55-5899-01 2 186673345 186673345 G A FSIP2 Missense_Mutation p.E6527K 0.14 possibly_damaging(0.449) TCGA-55-5899-01 2 192700754 192700754 C T SDPR Silent p.Q391Q 0.20 TCGA-55-5899-01 2 196749414 196749414 T A DNAH7 Silent p.R1886R 0.26 TCGA-55-5899-01 2 201523957 201523957 C A AOX1 Missense_Mutation p.P1081T 0.39 deleterious(0) probably_damaging(1) TCGA-55-5899-01 2 210887816 210887816 C T KANSL1L Missense_Mutation p.E941K 0.11 deleterious_low_confidence(0.03) benign(0.025) TCGA-55-5899-01 2 216295517 216295518 - T FN1 Frame_Shift_Ins p.K203Efs*26 0.20 TCGA-55-5899-01 2 218713187 218713187 G T TNS1 Missense_Mutation p.P560T 0.15 deleterious(0.01) benign(0.367) TCGA-55-5899-01 2 219292707 219292707 G C VIL1 Missense_Mutation p.A123P 0.22 deleterious(0.01) benign(0.063) TCGA-55-5899-01 2 219856956 219856956 G A CRYBA2 Silent p.A57A 0.53 TCGA-55-5899-01 2 223084911 223084911 G - PAX3 Frame_Shift_Del p.S374Wfs*7 0.16 TCGA-55-5899-01 2 230456401 230456401 C T DNER Silent p.Q160Q 0.32 TCGA-55-5899-01 2 231235658 231235658 A T SP140L Missense_Mutation p.S187C 0.44 tolerated(0.06) possibly_damaging(0.882) TCGA-55-5899-01 2 231973592 231973592 A T HTR2B Missense_Mutation p.L362Q 0.27 deleterious(0.05) probably_damaging(0.958) TCGA-55-5899-01 2 234367037 234367037 C A DGKD Silent p.I896I 0.19 TCGA-55-5899-01 2 234436080 234436080 T C USP40 Silent p.L577L 0.28 TCGA-55-5899-01 2 240016658 240016658 G A HDAC4 Intron 0.31 TCGA-55-5899-01 2 241621957 241621957 C G AQP12B Missense_Mutation p.E100Q 0.12 deleterious(0.02) benign(0.439) TCGA-55-5899-01 2 242065726 242065726 G A PASK Silent p.N868N 0.26 TCGA-55-5899-01 2 28855876 28855876 C T PLB1 Silent p.A1356A 0.27 TCGA-55-5899-01 2 44021745 44021745 G C DYNC2LI1 Missense_Mutation p.R157T 0.27 tolerated(0.16) benign(0.021) TCGA-55-5899-01 2 50280681 50280681 C A NRXN1 Missense_Mutation p.G1326W 0.25 deleterious(0) probably_damaging(1) TCGA-55-5899-01 2 50463964 50463964 C A NRXN1 Missense_Mutation p.S1210I 0.28 deleterious(0) probably_damaging(0.999) TCGA-55-5899-01 2 62112193 62112193 T C CCT4 Missense_Mutation p.I48V 0.24 tolerated(0.72) benign(0.015) TCGA-55-5899-01 2 70901905 70901905 G A ADD2 Missense_Mutation p.S549L 0.43 tolerated(0.68) benign(0.002) TCGA-55-5899-01 2 71209077 71209077 A G ANKRD53 Missense_Mutation p.N210S 0.28 tolerated(0.16) benign(0.155) TCGA-55-5899-01 2 71827870 71827870 G T DYSF Silent p.P1265P 0.44 TCGA-55-5899-01 2 79253230 79253230 C A REG3G Missense_Mutation p.P4H 0.53 tolerated(0.15) benign(0.013) TCGA-55-5899-01 2 79255046 79255046 G C REG3G Silent p.L149L 0.48 TCGA-55-5899-01 2 79312277 79312277 T A REG1B 3'UTR 0.76 TCGA-55-5899-01 2 85662892 85662892 G T SH2D6 Missense_Mutation p.R119L 0.47 tolerated(0.63) possibly_damaging(0.541) TCGA-55-5899-01 2 90193154 90193154 C A IGKV1D-13 Silent p.T27T 0.77 TCGA-55-5899-01 2 95481402 95481402 C A ANKRD20A8P RNA 0.22 TCGA-55-5899-01 2 96991493 96991493 G C ITPRIPL1 5'Flank 0.33 TCGA-55-5899-01 2 98408868 98408868 C A TMEM131 Silent p.S1375S 0.19 TCGA-55-5899-01 2 98907069 98907069 T A VWA3B Missense_Mutation p.N1047K 0.47 deleterious(0.01) possibly_damaging(0.71) TCGA-55-5899-01 3 132423161 132423161 C A NPHP3 Missense_Mutation p.D469Y 0.62 deleterious(0.01) benign(0.092) TCGA-55-5899-01 3 134670814 134670814 G T EPHB1 Missense_Mutation p.G242V 0.68 deleterious(0.01) possibly_damaging(0.887) TCGA-55-5899-01 3 14862106 14862106 C A FGD5 Missense_Mutation p.P510T 0.17 tolerated(0.51) benign(0.021) TCGA-55-5899-01 3 17052138 17052138 C G PLCL2 Missense_Mutation p.H308D 0.22 deleterious(0) probably_damaging(1) TCGA-55-5899-01 3 183547410 183547410 G A PARL Silent p.P372P 0.33 TCGA-55-5899-01 3 186974520 186974520 G T MASP1 Missense_Mutation p.L226M 0.61 deleterious(0.02) probably_damaging(0.999) TCGA-55-5899-01 3 20216036 20216036 G C SGOL1 Silent p.V329V 0.19 TCGA-55-5899-01 3 33135131 33135131 T A TMPPE Missense_Mutation p.Q186L 0.54 deleterious(0.02) benign(0.05) TCGA-55-5899-01 3 38592217 38592217 G T SCN5A Silent p.A1882A 0.47 TCGA-55-5899-01 3 419533 419533 C A CHL1 Missense_Mutation p.S595Y 0.44 tolerated(1) possibly_damaging(0.694) TCGA-55-5899-01 3 44835823 44835823 G C KIF15 Missense_Mutation p.E252Q 0.23 tolerated(0.09) possibly_damaging(0.85) TCGA-55-5899-01 3 48563078 48563078 C T PFKFB4 Missense_Mutation p.E338K 0.30 probably_damaging(0.974) TCGA-55-5899-01 3 51679135 51679135 G A RAD54L2 Missense_Mutation p.R849Q 0.43 deleterious(0) probably_damaging(0.996) TCGA-55-5899-01 3 52416447 52416447 C T DNAH1 Silent p.I2639I 0.25 TCGA-55-5899-01 3 52416461 52416461 C T DNAH1 Missense_Mutation p.S2644L 0.28 benign(0.347) TCGA-55-5899-01 3 58135872 58135872 C G FLNB Silent p.V2126V 0.29 TCGA-55-5899-01 3 74413726 74413726 C A CNTN3 Missense_Mutation p.G369C 0.32 deleterious(0) probably_damaging(1) TCGA-55-5899-01 3 96533434 96533434 G T EPHA6 5'UTR 0.32 TCGA-55-5899-01 3 97686195 97686195 G A MINA Silent p.F81F 0.71 TCGA-55-5899-01 3 9956381 9956381 G T IL17RE Missense_Mutation p.G456V 0.50 deleterious(0) probably_damaging(0.994) TCGA-55-5899-01 4 100205962 100205962 T A ADH1A Splice_Site p.X87_splice 0.54 TCGA-55-5899-01 4 100264040 100264040 T C ADH1C Missense_Mutation p.Y247C 0.21 probably_damaging(0.954) TCGA-55-5899-01 4 103504055 103504055 G T NFKB1 Nonsense_Mutation p.E290* 0.25 TCGA-55-5899-01 4 115997820 115997820 T C NDST4 Missense_Mutation p.K125E 0.13 deleterious(0.04) benign(0.122) TCGA-55-5899-01 4 115997821 115997821 G T NDST4 Silent p.G124G 0.12 TCGA-55-5899-01 4 121737722 121737722 G A PRDM5 Nonsense_Mutation p.Q251* 0.07 TCGA-55-5899-01 4 123255688 123255688 C T KIAA1109 Missense_Mutation p.P3946S 0.23 probably_damaging(0.989) TCGA-55-5899-01 4 126328197 126328197 G T FAT4 Missense_Mutation p.D1824Y 0.25 probably_damaging(1) TCGA-55-5899-01 4 134072045 134072045 C T PCDH10 Silent p.F250F 0.19 TCGA-55-5899-01 4 147179844 147179844 C A SLC10A7 Missense_Mutation p.K331N 0.34 tolerated(0.09) benign(0.055) TCGA-55-5899-01 4 152069310 152069310 G A SH3D19 Nonsense_Mutation p.Q336* 0.05 TCGA-55-5899-01 4 155157307 155157307 C A DCHS2 Missense_Mutation p.D2378Y 0.91 deleterious(0) probably_damaging(0.998) TCGA-55-5899-01 4 15780139 15780139 C A CD38 Silent p.I34I 0.27 TCGA-55-5899-01 4 15835864 15835864 A G CD38 Missense_Mutation p.D175G 0.27 tolerated(0.29) benign(0.076) TCGA-55-5899-01 4 16014962 16014962 C A PROM1 Splice_Site p.X360_splice 0.49 TCGA-55-5899-01 4 162841740 162841740 G A FSTL5 Silent p.H75H 0.22 TCGA-55-5899-01 4 166976321 166976321 G A TLL1 Missense_Mutation p.D540N 0.24 tolerated(0.14) benign(0.01) TCGA-55-5899-01 4 170347354 170347354 C T NEK1 Missense_Mutation p.E973K 0.21 tolerated(0.16) benign(0.067) TCGA-55-5899-01 4 184626183 184626183 G T TRAPPC11 Silent p.P1005P 0.60 TCGA-55-5899-01 4 24531295 24531295 C T DHX15 Nonsense_Mutation p.W733* 0.57 TCGA-55-5899-01 4 248482 248482 G T ZNF876P RNA 0.88 TCGA-55-5899-01 4 25014044 25014044 C A LGI2 Missense_Mutation p.A245S 0.26 tolerated(0.06) possibly_damaging(0.492) TCGA-55-5899-01 4 2901114 2901114 G A ADD1 Silent p.Q371Q 0.15 TCGA-55-5899-01 4 36150074 36150074 C A ARAP2 Missense_Mutation p.A985S 0.24 tolerated(0.05) possibly_damaging(0.525) TCGA-55-5899-01 4 57173832 57173832 G T KIAA1211 Missense_Mutation p.Q84H 0.34 tolerated(0.17) benign(0.06) TCGA-55-5899-01 4 68780441 68780441 G A TMPRSS11A Silent p.S323S 0.25 TCGA-55-5899-01 4 69962880 69962880 G A UGT2B7 Missense_Mutation p.M214I 0.48 tolerated(0.12) benign(0.037) TCGA-55-5899-01 4 71347026 71347026 A T MUC7 Missense_Mutation p.T189S 0.21 tolerated(0.11) unknown(0) TCGA-55-5899-01 4 87124 87124 C T Z95704.2 RNA 0.28 TCGA-55-5899-01 4 88416260 88416260 G C SPARCL1 Missense_Mutation p.S25C 0.46 deleterious(0) probably_damaging(0.935) TCGA-55-5899-01 4 99996201 99996201 C G ADH5 Splice_Site p.X276_splice 0.42 TCGA-55-5899-01 5 112173704 112173704 C - APC Frame_Shift_Del p.R805Dfs*15 0.43 TCGA-55-5899-01 5 118183794 118183794 G A DTWD2 Silent p.Y239Y 0.33 TCGA-55-5899-01 5 126250695 126250695 G A MARCH3 Missense_Mutation p.S107F 0.65 deleterious(0.01) possibly_damaging(0.873) TCGA-55-5899-01 5 128359320 128359320 C A SLC27A6 Missense_Mutation p.S391Y 0.43 tolerated(0.18) benign(0.027) TCGA-55-5899-01 5 13766118 13766118 C T DNAH5 Silent p.L3356L 0.39 TCGA-55-5899-01 5 139742515 139742515 C T SLC4A9 Missense_Mutation p.R300C 0.32 deleterious(0.03) benign(0.036) TCGA-55-5899-01 5 140430991 140430991 C A PCDHB1 5'UTR 0.57 TCGA-55-5899-01 5 140573673 140573673 C G PCDHB10 Silent p.L516L 0.18 TCGA-55-5899-01 5 140740006 140740006 T A PCDHGB2 Missense_Mutation p.C102S 0.60 deleterious(0) probably_damaging(0.993) TCGA-55-5899-01 5 140746246 140746246 G C PCDHGA5 Missense_Mutation p.E783D 0.62 tolerated_low_confidence(0.1) benign(0.049) TCGA-55-5899-01 5 141993563 141993563 C A FGF1 Missense_Mutation p.G44C 0.56 deleterious(0) probably_damaging(1) TCGA-55-5899-01 5 14358319 14358319 G C TRIO Missense_Mutation p.E693D 0.23 benign(0.05) TCGA-55-5899-01 5 157218842 157218842 C A CLINT1 Missense_Mutation p.A417S 0.29 tolerated(0.34) benign(0.003) TCGA-55-5899-01 5 15928376 15928376 G T FBXL7 Missense_Mutation p.A169S 0.44 deleterious(0.02) probably_damaging(0.982) TCGA-55-5899-01 5 15937076 15937076 C G FBXL7 Silent p.G419G 0.24 TCGA-55-5899-01 5 177546877 177546877 G T N4BP3 Missense_Mutation p.S98I 0.60 deleterious(0) possibly_damaging(0.629) TCGA-55-5899-01 5 31294250 31294250 G T CDH6 Missense_Mutation p.R137I 0.19 tolerated(0.11) benign(0.005) TCGA-55-5899-01 5 31299713 31299713 C T CDH6 Silent p.N262N 0.15 TCGA-55-5899-01 5 31323173 31323173 G A CDH6 Missense_Mutation p.D711N 0.21 tolerated(0.23) probably_damaging(0.996) TCGA-55-5899-01 5 33588844 33588844 G A ADAMTS12 Silent p.L909L 0.35 TCGA-55-5899-01 5 33658415 33658415 T A ADAMTS12 Missense_Mutation p.N355I 0.35 deleterious(0) probably_damaging(1) TCGA-55-5899-01 5 33982488 33982488 C G SLC45A2 Missense_Mutation p.V139L 0.20 deleterious(0.04) benign(0.035) TCGA-55-5899-01 5 35954243 35954243 G T UGT3A1 3'UTR 0.46 TCGA-55-5899-01 5 36201245 36201245 C A NADK2 Missense_Mutation p.R325S 0.13 deleterious(0) benign(0.114) TCGA-55-5899-01 5 39394497 39394497 C T DAB2 5'UTR 0.15 TCGA-55-5899-01 5 40853546 40853546 G T CARD6 Missense_Mutation p.E704D 0.31 tolerated(0.11) benign(0.02) TCGA-55-5899-01 5 45262467 45262467 C T HCN1 Silent p.P743P 0.44 TCGA-55-5899-01 5 45262537 45262537 G T HCN1 Missense_Mutation p.A720D 0.38 deleterious_low_confidence(0.02) benign(0.014) TCGA-55-5899-01 5 52361674 52361674 A C ITGA2 Missense_Mutation p.I604L 0.33 deleterious(0.01) probably_damaging(0.943) TCGA-55-5899-01 5 66479106 66479106 A C CD180 Missense_Mutation p.M522R 0.26 deleterious(0) possibly_damaging(0.853) TCGA-55-5899-01 5 68665364 68665364 C G TAF9 Intron 0.25 TCGA-55-5899-01 5 82837721 82837721 G T VCAN Nonsense_Mutation p.E2967* 0.65 TCGA-55-5899-01 5 9629772 9629772 G T TAS2R1 Missense_Mutation p.L125M 0.39 tolerated(0.11) possibly_damaging(0.598) TCGA-55-5899-01 6 11005668 11005668 G A ELOVL2 Silent p.L64L 0.28 TCGA-55-5899-01 6 112499347 112499347 G A LAMA4 Missense_Mutation p.H389Y 0.17 tolerated(0.36) possibly_damaging(0.511) TCGA-55-5899-01 6 116720740 116720740 G T DSE Missense_Mutation p.L109F 0.28 deleterious(0.04) probably_damaging(0.999) TCGA-55-5899-01 6 118635234 118635234 G T SLC35F1 Missense_Mutation p.G349V 0.40 deleterious(0) probably_damaging(0.999) TCGA-55-5899-01 6 129465092 129465092 C A LAMA2 Missense_Mutation p.S229Y 0.47 deleterious(0) probably_damaging(1) TCGA-55-5899-01 6 130761972 130761972 T A TMEM200A Silent p.I135I 0.25 TCGA-55-5899-01 6 132061443 132061444 CC - ENPP3 Frame_Shift_Del p.P794Gfs*26 0.36 TCGA-55-5899-01 6 132938383 132938383 C A TAAR2 Missense_Mutation p.W321L 0.29 deleterious(0) probably_damaging(0.998) TCGA-55-5899-01 6 137519417 137519417 G A IFNGR1 Silent p.H407H 0.28 TCGA-55-5899-01 6 142491482 142491482 G T VTA1 Splice_Site p.X112_splice 0.19 TCGA-55-5899-01 6 142491483 142491483 A T VTA1 Missense_Mutation p.K112N 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-55-5899-01 6 144769762 144769762 G T UTRN Silent p.G643G 0.19 TCGA-55-5899-01 6 145124231 145124231 G A UTRN Missense_Mutation p.R3102Q 0.49 deleterious(0) probably_damaging(0.999) TCGA-55-5899-01 6 146720526 146720526 C T GRM1 Missense_Mutation p.A784V 0.25 deleterious(0) probably_damaging(0.999) TCGA-55-5899-01 6 147124270 147124270 C T ADGB Intron 0.48 TCGA-55-5899-01 6 160514939 160514939 G A IGF2R Intron 0.37 TCGA-55-5899-01 6 16130937 16130937 G T MYLIP Missense_Mutation p.K79N 0.18 deleterious(0) probably_damaging(1) TCGA-55-5899-01 6 163985668 163985668 A G QKI Intron 0.48 TCGA-55-5899-01 6 169637775 169637775 G A THBS2 Silent p.C415C 0.29 TCGA-55-5899-01 6 26156692 26156692 G C HIST1H1E Missense_Mutation p.R25P 0.73 deleterious(0.04) benign(0.213) TCGA-55-5899-01 6 29342926 29342926 C T OR12D3 Missense_Mutation p.V47I 0.76 tolerated(0.46) benign(0.012) TCGA-55-5899-01 6 29641443 29641443 C A ZFP57 Missense_Mutation p.G149C 0.70 deleterious(0.03) benign(0.246) TCGA-55-5899-01 6 34508806 34508806 G A SPDEF Silent p.L197L 0.23 TCGA-55-5899-01 6 36710126 36710126 G T CPNE5 Silent p.P567P 0.69 TCGA-55-5899-01 6 43477341 43477341 G T LRRC73 Silent p.L61L 0.26 TCGA-55-5899-01 6 51890939 51890939 C G PKHD1 Missense_Mutation p.R1223S 0.81 tolerated(0.12) benign(0.068) TCGA-55-5899-01 6 70386117 70386117 G T LMBRD1 Nonsense_Mutation p.S519* 0.10 TCGA-55-5899-01 6 7230139 7230139 G T RREB1 Nonsense_Mutation p.E603* 0.17 TCGA-55-5899-01 6 83881763 83881763 T C PGM3 Missense_Mutation p.I448V 0.30 deleterious(0.04) benign(0.052) TCGA-55-5899-01 7 103038452 103038452 C A SLC26A5 Nonsense_Mutation p.G300* 0.27 TCGA-55-5899-01 7 121674370 121674370 C G PTPRZ1 Missense_Mutation p.T1741R 0.29 deleterious(0.01) benign(0.193) TCGA-55-5899-01 7 127255536 127255536 G T PAX4 Silent p.P13P 0.35 TCGA-55-5899-01 7 128357051 128357051 G T FAM71F1 Missense_Mutation p.R145M 0.27 deleterious(0) probably_damaging(0.987) TCGA-55-5899-01 7 129962387 129962387 C T CPA4 Silent p.F379F 0.18 TCGA-55-5899-01 7 130023266 130023266 G C CPA1 Missense_Mutation p.W173S 0.29 deleterious(0) probably_damaging(0.997) TCGA-55-5899-01 7 137150727 137150727 G T DGKI Missense_Mutation p.P855T 0.12 deleterious(0.02) possibly_damaging(0.894) TCGA-55-5899-01 7 137255965 137255965 C T DGKI Missense_Mutation p.D635N 0.26 deleterious(0) probably_damaging(0.99) TCGA-55-5899-01 7 138487821 138487821 G T TMEM213 3'UTR 0.21 TCGA-55-5899-01 7 139715629 139715629 T A TBXAS1 Missense_Mutation p.W492R 0.23 deleterious(0) probably_damaging(0.999) TCGA-55-5899-01 7 140246656 140246656 G A DENND2A Silent p.F707F 0.52 TCGA-55-5899-01 7 141952034 141952034 C G PRSS58 3'UTR 0.19 TCGA-55-5899-01 7 142459794 142459794 T A PRSS1 Missense_Mutation p.S124T 0.49 tolerated(0.18) benign(0.023) TCGA-55-5899-01 7 142569542 142569542 C G TRPV6 Missense_Mutation p.R699P 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-55-5899-01 7 142573311 142573311 G T TRPV6 Silent p.T344T 0.26 TCGA-55-5899-01 7 142723355 142723355 G A OR9A2 Missense_Mutation p.R289W 0.19 deleterious(0.03) benign(0.082) TCGA-55-5899-01 7 143175820 143175820 C T TAS2R41 Silent p.F285F 0.14 TCGA-55-5899-01 7 143632996 143632996 C A OR2F2 Missense_Mutation p.T224N 0.46 deleterious(0) benign(0.261) TCGA-55-5899-01 7 143632997 143632997 C A OR2F2 Silent p.T224T 0.47 TCGA-55-5899-01 7 143657299 143657299 C A OR2F1 Missense_Mutation p.P79H 0.26 deleterious(0) probably_damaging(0.97) TCGA-55-5899-01 7 150647133 150647133 G A KCNH2 Intron 0.36 TCGA-55-5899-01 7 15652076 15652076 C T MEOX2 Missense_Mutation p.G284E 0.22 deleterious_low_confidence(0.05) benign(0.038) TCGA-55-5899-01 7 24705690 24705690 C T MPP6 Missense_Mutation p.L312F 0.16 tolerated(0.06) possibly_damaging(0.458) TCGA-55-5899-01 7 27182769 27182769 G T HOXA5 Missense_Mutation p.A153D 0.25 tolerated(0.3) benign(0.035) TCGA-55-5899-01 7 2972221 2972221 C T CARD11 Splice_Site p.X507_splice 0.35 TCGA-55-5899-01 7 30065927 30065927 C A FKBP14 Splice_Site p.X66_splice 0.24 TCGA-55-5899-01 7 31013715 31013715 C G GHRHR Nonsense_Mutation p.S238* 0.07 TCGA-55-5899-01 7 33055308 33055308 G A NT5C3A Silent p.L295L 0.27 TCGA-55-5899-01 7 33427748 33427748 T A BBS9 Missense_Mutation p.Y703N 0.23 deleterious(0) probably_damaging(0.986) TCGA-55-5899-01 7 4169711 4169711 G C SDK1 Missense_Mutation p.E1371Q 0.21 deleterious(0.05) benign(0.171) TCGA-55-5899-01 7 42006172 42006172 G C GLI3 Silent p.L833L 0.22 TCGA-55-5899-01 7 43351607 43351607 G A HECW1 Silent p.G91G 0.09 TCGA-55-5899-01 7 48337962 48337962 G T ABCA13 Splice_Site p.X3067_splice 0.27 TCGA-55-5899-01 7 49977048 49977048 A T ZPBP 3'UTR 0.33 TCGA-55-5899-01 7 81641520 81641520 C T CACNA2D1 Missense_Mutation p.G438R 0.14 deleterious(0.02) benign(0.022) TCGA-55-5899-01 7 90042182 90042182 C T CLDN12 Silent p.S64S 0.50 TCGA-55-5899-01 7 99022675 99022675 C A ATP5J2-PTCD1 Missense_Mutation p.A543S 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-55-5899-01 7 99261603 99261603 G A CYP3A5 Silent p.N262N 0.11 TCGA-55-5899-01 7 99768065 99768065 C T GPC2 Missense_Mutation p.D510N 0.52 deleterious(0.02) probably_damaging(1) TCGA-55-5899-01 8 100865784 100865784 C T VPS13B Silent p.L3414L 0.43 TCGA-55-5899-01 8 10465293 10465293 C A RP1L1 Missense_Mutation p.E2105D 0.31 unknown(0) TCGA-55-5899-01 8 105105868 105105868 T C RIMS2 Intron 0.28 TCGA-55-5899-01 8 113237069 113237069 G T CSMD3 Missense_Mutation p.N3685K 0.42 deleterious(0.01) benign(0.05) TCGA-55-5899-01 8 113420573 113420573 G T CSMD3 Missense_Mutation p.A1860D 0.40 deleterious(0.03) possibly_damaging(0.83) TCGA-55-5899-01 8 113504807 113504807 C A CSMD3 Missense_Mutation p.G1730V 0.17 deleterious(0) probably_damaging(1) TCGA-55-5899-01 8 113988360 113988360 G C CSMD3 Missense_Mutation p.H350D 0.25 tolerated(0.19) benign(0.002) TCGA-55-5899-01 8 114290908 114290908 G C CSMD3 Missense_Mutation p.P143A 0.10 tolerated(0.88) benign(0.324) TCGA-55-5899-01 8 125094628 125094628 C A FER1L6 Silent p.T1440T 0.33 TCGA-55-5899-01 8 131848553 131848553 A G ADCY8 Missense_Mutation p.L882P 0.29 tolerated(0.17) possibly_damaging(0.69) TCGA-55-5899-01 8 139263227 139263227 G T FAM135B Silent p.V133V 0.14 TCGA-55-5899-01 8 139263230 139263230 C G FAM135B Missense_Mutation p.M132I 0.14 tolerated(0.07) benign(0.1) TCGA-55-5899-01 8 25747273 25747273 G C EBF2 Missense_Mutation p.S249W 0.70 deleterious(0) probably_damaging(0.97) TCGA-55-5899-01 8 35606136 35606136 A T UNC5D Missense_Mutation p.I620F 0.60 deleterious(0) probably_damaging(0.941) TCGA-55-5899-01 8 401310 401310 C G FBXO25 Missense_Mutation p.L173V 0.28 deleterious(0.05) possibly_damaging(0.692) TCGA-55-5899-01 8 42863026 42863026 G T HOOK3 Missense_Mutation p.K564N 0.11 deleterious(0.04) possibly_damaging(0.534) TCGA-55-5899-01 8 49986681 49986681 A G C8orf22 Missense_Mutation p.D40G 0.20 tolerated(0.15) possibly_damaging(0.602) TCGA-55-5899-01 8 61654428 61654428 G T CHD7 Missense_Mutation p.G146V 0.53 probably_damaging(0.953) TCGA-55-5899-01 8 67086987 67086987 A G TRIM55 3'UTR 0.27 TCGA-55-5899-01 8 67405782 67405782 G T C8orf46 5'UTR 0.45 TCGA-55-5899-01 8 72127688 72127688 T A EYA1 Nonsense_Mutation p.K511* 0.22 TCGA-55-5899-01 8 72946498 72946498 G T TRPA1 Silent p.I890I 0.23 TCGA-55-5899-01 8 77618691 77618691 A T ZFHX4 Nonsense_Mutation p.K790* 0.27 TCGA-55-5899-01 8 77896354 77896354 C T PEX2 Missense_Mutation p.D21N 0.36 deleterious(0) probably_damaging(1) TCGA-55-5899-01 8 86354306 86354306 G A CA3 Silent p.L79L 0.17 TCGA-55-5899-01 8 93003909 93003909 G A RUNX1T1 Missense_Mutation p.H328Y 0.36 tolerated(0.25) possibly_damaging(0.703) TCGA-55-5899-01 9 107379868 107379868 G A OR13C9 Silent p.F206F 0.33 TCGA-55-5899-01 9 116224430 116224430 C G RGS3 Missense_Mutation p.Q122E 0.34 deleterious_low_confidence(0) benign(0) TCGA-55-5899-01 9 125288811 125288811 G A OR1N1 Silent p.F254F 0.48 TCGA-55-5899-01 9 131909771 131909771 G T PPP2R4 3'UTR 0.15 TCGA-55-5899-01 9 135114645 135114645 G T NTNG2 Missense_Mutation p.E403D 0.24 tolerated(0.22) benign(0.075) TCGA-55-5899-01 9 138712840 138712840 C T CAMSAP1 Missense_Mutation p.V1223M 0.53 tolerated(0.26) benign(0.028) TCGA-55-5899-01 9 14146719 14146719 A T NFIB Silent p.A298A 0.67 TCGA-55-5899-01 9 14720083 14720083 G C CER1 3'UTR 0.37 TCGA-55-5899-01 9 15721814 15721814 G T CCDC171 Nonsense_Mutation p.E456* 0.70 TCGA-55-5899-01 9 35045018 35045018 C A C9orf131 Missense_Mutation p.P798T 0.72 deleterious(0.03) benign(0.322) TCGA-55-5899-01 9 5968771 5968771 C G KIAA2026 Missense_Mutation p.R487T 0.16 deleterious(0.03) benign(0.36) TCGA-55-5899-01 9 6602161 6602161 C T GLDC Missense_Mutation p.R368K 0.72 deleterious(0) probably_damaging(0.996) TCGA-55-5899-01 9 79325909 79325909 G C PRUNE2 Missense_Mutation p.D427E 0.33 deleterious(0) probably_damaging(0.999) TCGA-55-5899-01 9 79933380 79933380 T G VPS13A Missense_Mutation p.I1729S 0.33 deleterious(0) possibly_damaging(0.739) TCGA-55-5899-01 9 96214681 96214681 G T FAM120AOS Missense_Mutation p.P104H 0.71 deleterious_low_confidence(0.01) unknown(0) TCGA-55-5899-01 X 102974190 102974190 G T GLRA4 Missense_Mutation p.T243N 0.78 deleterious(0) possibly_damaging(0.864) TCGA-55-5899-01 X 107823933 107823933 G T COL4A5 Missense_Mutation p.G286C 0.23 unknown(0) TCGA-55-5899-01 X 110490676 110490676 G T CAPN6 Missense_Mutation p.Q555K 0.88 tolerated(0.36) benign(0.001) TCGA-55-5899-01 X 120009188 120009188 G T CT47B1 Missense_Mutation p.R113S 0.52 deleterious(0.02) possibly_damaging(0.778) TCGA-55-5899-01 X 123526090 123526090 C T TENM1 Missense_Mutation p.G1834R 0.44 deleterious(0) probably_damaging(0.995) TCGA-55-5899-01 X 130218276 130218276 A G ARHGAP36 Missense_Mutation p.I215V 0.25 tolerated(0.31) benign(0.041) TCGA-55-5899-01 X 135438316 135438316 C A GPR112 Silent p.R2307R 0.76 TCGA-55-5899-01 X 135570277 135570277 G T BRS3 Missense_Mutation p.A2S 0.85 tolerated_low_confidence(1) benign(0) TCGA-55-5899-01 X 139586803 139586803 C A SOX3 Silent p.R141R 0.70 TCGA-55-5899-01 X 140969218 140969218 A G MAGEC3 Missense_Mutation p.Y182C 0.40 tolerated(0.17) benign(0) TCGA-55-5899-01 X 142605183 142605183 T C SPANXN3 Missense_Mutation p.T13A 0.15 deleterious(0.04) benign(0.021) TCGA-55-5899-01 X 146353884 146353884 A T MIR510 RNA 0.41 TCGA-55-5899-01 X 35988934 35988934 G T CXorf22 Missense_Mutation p.A622S 0.64 tolerated(0.46) possibly_damaging(0.544) TCGA-55-5899-01 X 37961594 37961594 G T SYTL5 Splice_Site p.X355_splice 0.69 TCGA-55-5899-01 X 44928907 44928907 C T KDM6A Silent p.L669L 0.83 TCGA-55-5899-01 X 50053312 50053312 G A CCNB3 Missense_Mutation p.E715K 0.89 tolerated(0.27) possibly_damaging(0.493) TCGA-55-5899-01 X 53563173 53563173 C A HUWE1 Missense_Mutation p.G4156C 0.89 unknown(0) TCGA-55-5899-01 X 54956525 54956525 C G TRO Missense_Mutation p.P1123R 0.62 tolerated(0.08) probably_damaging(0.946) TCGA-55-5899-01 X 64718908 64718908 G A ZC3H12B Missense_Mutation p.E260K 0.81 tolerated(0.18) probably_damaging(0.988) TCGA-55-5899-01 X 72673394 72673394 G C CDX4 Missense_Mutation p.D182H 0.26 deleterious(0) probably_damaging(0.999) TCGA-55-5899-01 X 83390111 83390111 C A RPS6KA6 Splice_Site p.X203_splice 0.31 TCGA-55-5899-01 X 89177843 89177843 C A TGIF2LX 3'UTR 0.76 TCGA-55-5899-01 X 90691644 90691644 A T PABPC5 Missense_Mutation p.K356N 0.89 deleterious(0.01) probably_damaging(0.944) TCGA-55-6543-01 10 102256138 102256138 C G SEC31B Silent p.R729R 0.29 TCGA-55-6543-01 11 118771997 118771997 G A BCL9L Missense_Mutation p.R819W 0.28 probably_damaging(0.967) TCGA-55-6543-01 14 20344588 20344588 C A OR4K2 Missense_Mutation p.H54Q 0.47 tolerated(0.15) benign(0.009) TCGA-55-6543-01 14 22180975 22180975 T A TRAV2 Missense_Mutation p.Y83N 0.22 deleterious(0.05) probably_damaging(0.994) TCGA-55-6543-01 14 24607425 24607425 G C PSME1 Missense_Mutation p.M160I 0.04 tolerated(0.67) benign(0.301) TCGA-55-6543-01 15 25652270 25652270 T C UBE3A Intron 0.20 TCGA-55-6543-01 17 10436696 10436696 G A MYH2 Nonsense_Mutation p.R783* 0.25 TCGA-55-6543-01 19 11152224 11152224 A G SMARCA4 Missense_Mutation p.K1471R 0.32 possibly_damaging(0.653) TCGA-55-6543-01 19 49445800 49445800 C T DHDH Silent p.S241S 0.35 TCGA-55-6543-01 19 56166481 56166481 T A U2AF2 Missense_Mutation p.F4Y 0.17 deleterious_low_confidence(0) benign(0.003) TCGA-55-6543-01 1 110280922 110280922 G A GSTM3 Missense_Mutation p.R86C 0.34 deleterious(0.01) probably_damaging(0.934) TCGA-55-6543-01 1 24397690 24397690 G A MYOM3 Missense_Mutation p.R1023W 0.11 deleterious(0) probably_damaging(0.999) TCGA-55-6543-01 21 44185571 44185571 T - PDE9A Frame_Shift_Del p.F442Lfs*9 0.15 TCGA-55-6543-01 22 41832895 41832915 TTGGACAGGGAGCTGTCCTGG GTGGA TOB2 Frame_Shift_Del p.Q146Pfs*41 0.13 TCGA-55-6543-01 2 230312248 230312248 C T DNER Missense_Mutation p.G424R 0.19 deleterious(0) probably_damaging(0.999) TCGA-55-6543-01 3 46593057 46593057 C A LRRC2 Missense_Mutation p.D9Y 0.31 deleterious(0) probably_damaging(1) TCGA-55-6543-01 5 146030242 146030242 G A PPP2R2B Nonsense_Mutation p.R168* 0.11 TCGA-55-6543-01 5 167553836 167553836 G A TENM2 Missense_Mutation p.A763T 0.18 tolerated(0.48) benign(0.001) TCGA-55-6543-01 5 31526237 31526237 T A DROSHA Missense_Mutation p.D268V 0.15 deleterious_low_confidence(0.01) benign(0.094) TCGA-55-6543-01 7 100478963 100478963 G A SRRT Silent p.R60R 0.23 TCGA-55-6543-01 7 99796940 99796940 G A STAG3 Missense_Mutation p.R508Q 0.15 tolerated(0.34) benign(0) TCGA-55-6543-01 9 134070639 134070639 A T NUP214 Missense_Mutation p.I1227L 0.29 benign(0.099) TCGA-55-6543-01 X 119664014 119664014 T A CUL4B Silent p.T863T 0.16 TCGA-55-6543-01 X 138630558 138630558 A G F9 Missense_Mutation p.Q143R 0.22 deleterious(0.01) benign(0.389) TCGA-55-6543-01 X 153173206 153173206 C G ARHGAP4 Missense_Mutation p.D980H 0.09 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-55-6543-01 X 54497770 54497770 C T FGD1 Missense_Mutation p.R153Q 0.14 deleterious(0.04) possibly_damaging(0.602) TCGA-55-6543-01 X 57146479 57146479 G A SPIN2B Missense_Mutation p.S195F 0.21 deleterious(0.01) benign(0.142) TCGA-55-6642-01 10 102057200 102057200 G A PKD2L1 Nonsense_Mutation p.R299* 0.17 TCGA-55-6642-01 10 115609681 115609681 T C DCLRE1A Missense_Mutation p.T395A 0.08 tolerated(0.6) benign(0.004) TCGA-55-6642-01 10 134038741 134038741 C A STK32C Missense_Mutation p.G291V 0.26 deleterious(0) probably_damaging(0.994) TCGA-55-6642-01 10 21784774 21784774 G T CASC10 Missense_Mutation p.P56T 0.44 tolerated_low_confidence(0.16) benign(0.054) TCGA-55-6642-01 10 29824951 29824951 C A SVIL Missense_Mutation p.G292V 0.33 deleterious(0) probably_damaging(0.986) TCGA-55-6642-01 10 76790413 76790413 A G KAT6B Missense_Mutation p.Y1944C 0.17 probably_damaging(0.998) TCGA-55-6642-01 10 79745855 79745855 G A POLR3A Silent p.G988G 0.32 TCGA-55-6642-01 11 108123623 108123623 C T ATM Nonsense_Mutation p.Q628* 0.10 TCGA-55-6642-01 11 108205768 108205768 G T ATM Missense_Mutation p.G2695C 0.33 deleterious(0) probably_damaging(1) TCGA-55-6642-01 11 110035384 110035384 C T ZC3H12C Missense_Mutation p.P525L 0.29 tolerated(0.92) probably_damaging(0.972) TCGA-55-6642-01 11 11362424 11362424 T G GALNT18 Missense_Mutation p.E407A 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-55-6642-01 11 4703444 4703444 G C OR51E2 Silent p.A166A 0.09 TCGA-55-6642-01 11 5363838 5363838 G T OR51B5 Missense_Mutation p.T306N 0.21 deleterious(0.04) benign(0.002) TCGA-55-6642-01 11 59949055 59949055 C A MS4A6A Missense_Mutation p.G77V 0.12 deleterious(0.03) possibly_damaging(0.728) TCGA-55-6642-01 11 6292297 6292297 A T CCKBR Missense_Mutation p.S290C 0.18 deleterious(0.02) possibly_damaging(0.614) TCGA-55-6642-01 11 68191071 68191071 A G LRP5 Missense_Mutation p.I1048V 0.10 deleterious(0.05) benign(0.018) TCGA-55-6642-01 11 78433921 78433921 G A TENM4 Nonsense_Mutation p.Q1198* 0.20 TCGA-55-6642-01 11 7960402 7960402 C A OR10A3 Silent p.L222L 0.16 TCGA-55-6642-01 11 7981827 7981827 G T NLRP10 Silent p.A444A 0.12 TCGA-55-6642-01 12 107391114 107391114 C T CRY1 Missense_Mutation p.G515R 0.06 tolerated_low_confidence(0.27) benign(0.002) TCGA-55-6642-01 12 109017390 109017390 G T SELPLG Missense_Mutation p.Q248K 0.15 tolerated(0.53) benign(0.002) TCGA-55-6642-01 12 109719546 109719546 C T FOXN4 Silent p.P320P 0.14 TCGA-55-6642-01 12 1943635 1943635 G A LRTM2 Silent p.P287P 0.26 TCGA-55-6642-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.29 deleterious(0) possibly_damaging(0.479) TCGA-55-6642-01 12 2932973 2932973 C T ITFG2 Silent p.C368C 0.07 TCGA-55-6642-01 12 29608259 29608259 C A OVCH1 Missense_Mutation p.G787V 0.26 deleterious(0) probably_damaging(0.954) TCGA-55-6642-01 12 32135902 32135902 A G KIAA1551 Silent p.E671E 0.22 TCGA-55-6642-01 12 7548699 7548699 A G CD163L1 Missense_Mutation p.I681T 0.08 tolerated(1) benign(0.003) TCGA-55-6642-01 12 94806266 94806266 T C CCDC41 Translation_Start_Site p.M1? 0.27 deleterious_low_confidence(0.01) probably_damaging(0.915) TCGA-55-6642-01 13 111176305 111176305 C A RAB20 Missense_Mutation p.G138W 0.15 deleterious(0) possibly_damaging(0.866) TCGA-55-6642-01 14 106207990 106207990 C T IGHG1 Silent p.E271E 0.33 TCGA-55-6642-01 14 106405763 106405763 C G IGHV6-1 Missense_Mutation p.G71R 0.33 deleterious(0) possibly_damaging(0.857) TCGA-55-6642-01 14 106586415 106586415 C T IGHV3-13 Missense_Mutation p.V24M 0.15 deleterious_low_confidence(0.02) benign(0.392) TCGA-55-6642-01 14 20854332 20854332 C A TEP1 Nonsense_Mutation p.E962* 0.12 TCGA-55-6642-01 14 22102089 22102089 G T OR10G2 Missense_Mutation p.L304M 0.13 tolerated(0.2) probably_damaging(0.999) TCGA-55-6642-01 14 45433416 45433416 G A FAM179B Missense_Mutation p.G598R 0.39 tolerated(0.13) benign(0.003) TCGA-55-6642-01 14 62567300 62567300 G T SYT16 Nonsense_Mutation p.E605* 0.18 TCGA-55-6642-01 14 73720461 73720461 G T PAPLN Splice_Site p.X338_splice 0.25 TCGA-55-6642-01 14 92915520 92915520 C T SLC24A4 Silent p.D280D 0.10 TCGA-55-6642-01 14 99640726 99640726 C A BCL11B Missense_Mutation p.R816L 0.26 deleterious(0) benign(0.147) TCGA-55-6642-01 15 24924482 24924482 G T NPAP1 Silent p.P1156P 0.12 TCGA-55-6642-01 15 27160003 27160003 C A GABRA5 Missense_Mutation p.A184E 0.16 tolerated(0.75) possibly_damaging(0.687) TCGA-55-6642-01 15 34653713 34653713 T C LPCAT4 Missense_Mutation p.D344G 0.15 deleterious(0.03) possibly_damaging(0.504) TCGA-55-6642-01 16 16218667 16218667 G T ABCC1 Missense_Mutation p.E1204D 0.27 deleterious(0.04) probably_damaging(0.994) TCGA-55-6642-01 16 1859417 1859417 C G HAGH Intron 0.12 TCGA-55-6642-01 16 28947911 28947911 C T CD19 Silent p.T358T 0.19 TCGA-55-6642-01 16 48244967 48244967 G - ABCC11 Frame_Shift_Del p.N500Kfs*8 0.21 TCGA-55-6642-01 16 716792 716792 G T WDR90 Missense_Mutation p.Q1668H 0.32 deleterious(0) probably_damaging(0.979) TCGA-55-6642-01 16 716793 716793 G T WDR90 Splice_Site p.X1668_splice 0.32 TCGA-55-6642-01 16 77369710 77369710 C A ADAMTS18 Missense_Mutation p.C601F 0.39 deleterious(0) probably_damaging(0.998) TCGA-55-6642-01 17 5235390 5235390 G T RABEP1 Missense_Mutation p.D104Y 0.21 deleterious(0) probably_damaging(0.974) TCGA-55-6642-01 17 72368582 72368582 T A GPR142 Missense_Mutation p.F411Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-55-6642-01 17 76117707 76117707 C G TMC6 Missense_Mutation p.W438S 0.19 deleterious(0) benign(0.175) TCGA-55-6642-01 17 9694562 9694562 G A DHRS7C Silent p.L14L 0.33 TCGA-55-6642-01 17 9792853 9792853 A G GLP2R Missense_Mutation p.N498S 0.12 tolerated(0.42) benign(0) TCGA-55-6642-01 18 61233938 61233938 G T SERPINB12 Silent p.L304L 0.30 TCGA-55-6642-01 18 6959354 6959354 C A LAMA1 Missense_Mutation p.L2588F 0.16 deleterious(0.01) possibly_damaging(0.905) TCGA-55-6642-01 19 13339571 13339571 C T CACNA1A Intron 0.41 TCGA-55-6642-01 19 36231408 36231408 G - IGFLR1 Frame_Shift_Del p.P72Rfs*26 0.15 TCGA-55-6642-01 19 36393396 36393396 G C HCST 5'UTR 0.16 TCGA-55-6642-01 19 36393397 36393397 G A HCST 5'UTR 0.17 TCGA-55-6642-01 19 38876275 38876275 A C GGN Missense_Mutation p.L543V 0.10 tolerated_low_confidence(1) benign(0.127) TCGA-55-6642-01 19 38976748 38976748 C G RYR1 Missense_Mutation p.A1818G 0.32 benign(0.307) TCGA-55-6642-01 19 41703808 41703808 G T CYP2S1 Silent p.L156L 0.15 TCGA-55-6642-01 19 51215303 51215303 C T SHANK1 Silent p.T287T 0.08 TCGA-55-6642-01 19 53572754 53572754 C G ZNF160 Missense_Mutation p.E345Q 0.10 deleterious(0.02) probably_damaging(0.966) TCGA-55-6642-01 19 57327542 57327542 G - PEG3 Frame_Shift_Del p.Y757Mfs*26 0.16 TCGA-55-6642-01 19 57647012 57647012 G T ZIM3 Silent p.A231A 0.17 TCGA-55-6642-01 19 57883173 57883173 G T ZNF547 Silent p.V16V 0.12 TCGA-55-6642-01 19 57883174 57883174 G T ZNF547 Missense_Mutation p.A17S 0.12 deleterious(0.01) possibly_damaging(0.847) TCGA-55-6642-01 19 9577542 9577542 C T ZNF560 Missense_Mutation p.R694Q 0.20 tolerated(0.43) possibly_damaging(0.602) TCGA-55-6642-01 1 100343333 100343333 C T AGL Silent p.F520F 0.19 TCGA-55-6642-01 1 100614308 100614308 G T TRMT13 Missense_Mutation p.V460L 0.11 tolerated(0.06) possibly_damaging(0.872) TCGA-55-6642-01 1 114640500 114640500 C A SYT6 Splice_Site p.X370_splice 0.17 TCGA-55-6642-01 1 116233804 116233804 C T VANGL1 Missense_Mutation p.S460F 0.27 tolerated(0.14) possibly_damaging(0.748) TCGA-55-6642-01 1 118003128 118003128 G T MAN1A2 Missense_Mutation p.W323L 0.24 deleterious(0) possibly_damaging(0.503) TCGA-55-6642-01 1 145438883 145438883 G T TXNIP Silent p.V27V 0.47 TCGA-55-6642-01 1 152538635 152538635 G T LCE3E Missense_Mutation p.P17H 0.09 deleterious_low_confidence(0.05) unknown(0) TCGA-55-6642-01 1 152552130 152552130 C A LCE3D 3'UTR 0.09 TCGA-55-6642-01 1 154544242 154544242 A T CHRNB2 Missense_Mutation p.S315C 0.44 deleterious(0) probably_damaging(0.998) TCGA-55-6642-01 1 159170598 159170598 C A CADM3 Silent p.T395T 0.36 TCGA-55-6642-01 1 159799681 159799681 T C SLAMF8 Silent p.G22G 0.19 TCGA-55-6642-01 1 160850401 160850401 G C ITLN1 Missense_Mutation p.S221C 0.20 deleterious(0) possibly_damaging(0.885) TCGA-55-6642-01 1 171303751 171303751 C T FMO4 Silent p.S343S 0.08 TCGA-55-6642-01 1 175092548 175092548 C A TNN Missense_Mutation p.P888H 0.31 deleterious(0) probably_damaging(0.995) TCGA-55-6642-01 1 175375611 175375611 G T TNR Silent p.S80S 0.31 TCGA-55-6642-01 1 19168239 19168239 G A TAS1R2 Silent p.F525F 0.18 TCGA-55-6642-01 1 213415205 213415205 G T RPS6KC1 Missense_Mutation p.D796Y 0.39 tolerated(0.12) benign(0.003) TCGA-55-6642-01 1 216850479 216850479 C A ESRRG Silent p.G142G 0.15 TCGA-55-6642-01 1 237880622 237880622 C A RYR2 Missense_Mutation p.P3483H 0.47 probably_damaging(0.91) TCGA-55-6642-01 1 238090476 238090476 G T RP11-193H5.1 RNA 0.39 TCGA-55-6642-01 1 28144412 28144412 C T STX12 Silent p.I209I 0.18 TCGA-55-6642-01 1 28144414 28144414 A C STX12 Missense_Mutation p.H210P 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-6642-01 1 34092172 34092172 A T CSMD2 Missense_Mutation p.L1697Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-55-6642-01 1 78207102 78207102 C A USP33 Missense_Mutation p.D63Y 0.15 deleterious(0.01) probably_damaging(0.953) TCGA-55-6642-01 20 37356236 37356236 G T SLC32A1 Nonsense_Mutation p.E178* 0.16 TCGA-55-6642-01 20 45985449 45985449 A C ZMYND8 5'Flank 0.16 TCGA-55-6642-01 20 47296209 47296209 G C PREX1 Missense_Mutation p.L507V 0.27 deleterious(0.04) possibly_damaging(0.694) TCGA-55-6642-01 20 52782307 52782307 C A CYP24A1 Missense_Mutation p.V236L 0.28 tolerated(1) benign(0.001) TCGA-55-6642-01 20 61039900 61039900 A T GATA5 Missense_Mutation p.L396M 0.15 deleterious(0.01) probably_damaging(0.93) TCGA-55-6642-01 20 62046267 62046267 T A KCNQ2 Missense_Mutation p.Q505L 0.35 deleterious(0.01) possibly_damaging(0.507) TCGA-55-6642-01 21 10998325 10998325 A T TPTE RNA 0.29 TCGA-55-6642-01 22 39770447 39770447 G T SYNGR1 Missense_Mutation p.V76L 0.12 tolerated(0.23) possibly_damaging(0.826) TCGA-55-6642-01 2 120438630 120438630 G T TMEM177 Missense_Mutation p.E67D 0.30 tolerated(0.55) benign(0.036) TCGA-55-6642-01 2 128481960 128481960 C A WDR33 Silent p.L381L 0.12 TCGA-55-6642-01 2 162807357 162807357 A T SLC4A10 Missense_Mutation p.K847M 0.29 deleterious(0) probably_damaging(0.999) TCGA-55-6642-01 2 196636407 196636407 C A DNAH7 Missense_Mutation p.V3804L 0.13 tolerated(0.18) benign(0.09) TCGA-55-6642-01 2 198646540 198646540 G T BOLL Missense_Mutation p.P24H 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.878) TCGA-55-6642-01 2 198646541 198646541 G T BOLL Missense_Mutation p.P24T 0.12 tolerated_low_confidence(0.91) benign(0.011) TCGA-55-6642-01 2 231327148 231327148 A T SP100 Splice_Site p.X325_splice 0.24 TCGA-55-6642-01 2 26151869 26151869 G T KIF3C Missense_Mutation p.A787E 0.12 benign(0.001) TCGA-55-6642-01 2 27535444 27535444 G A MPV17 Missense_Mutation p.P98S 0.07 deleterious(0) probably_damaging(0.989) TCGA-55-6642-01 2 39988520 39988520 C A THUMPD2 Missense_Mutation p.G281V 0.09 deleterious(0) probably_damaging(1) TCGA-55-6642-01 2 99012411 99012411 G C CNGA3 Missense_Mutation p.D260H 0.14 deleterious(0) probably_damaging(0.999) TCGA-55-6642-01 3 62317051 62317051 C T C3orf14 Missense_Mutation p.R77W 0.18 tolerated(0.18) possibly_damaging(0.491) TCGA-55-6642-01 3 9488802 9488802 G A SETD5 Silent p.R531R 0.43 TCGA-55-6642-01 3 98188897 98188897 T A OR5K1 Missense_Mutation p.H159Q 0.11 tolerated(0.05) possibly_damaging(0.462) TCGA-55-6642-01 4 187454987 187454987 C A MTNR1A Missense_Mutation p.R303S 0.08 deleterious(0.01) possibly_damaging(0.762) TCGA-55-6642-01 4 46252550 46252550 A T GABRA2 Missense_Mutation p.N377K 0.20 tolerated(0.1) possibly_damaging(0.864) TCGA-55-6642-01 4 77817780 77817780 C A SOWAHB Missense_Mutation p.S408I 0.19 deleterious(0) benign(0.403) TCGA-55-6642-01 4 79360172 79360172 C T FRAS1 Missense_Mutation p.P1828L 0.16 benign(0.089) TCGA-55-6642-01 4 99055589 99055589 G A STPG2 Missense_Mutation p.S44F 0.08 deleterious(0) probably_damaging(1) TCGA-55-6642-01 5 13721350 13721350 C G DNAH5 Missense_Mutation p.R4013P 0.08 possibly_damaging(0.767) TCGA-55-6642-01 5 140476407 140476407 C A PCDHB2 Missense_Mutation p.A678E 0.26 tolerated_low_confidence(0.27) benign(0.016) TCGA-55-6642-01 5 140725310 140725310 C T PCDHGA3 Silent p.D570D 0.13 TCGA-55-6642-01 5 149286941 149286941 C A PDE6A Silent p.P333P 0.12 TCGA-55-6642-01 5 149286942 149286942 C G PDE6A Splice_Site p.X333_splice 0.12 TCGA-55-6642-01 5 178552041 178552041 G T ADAMTS2 Missense_Mutation p.P964H 0.28 deleterious(0) probably_damaging(1) TCGA-55-6642-01 5 35740120 35740120 A G SPEF2 Missense_Mutation p.T1055A 0.15 tolerated(0.4) benign(0.001) TCGA-55-6642-01 5 40964946 40964946 G C C7 Missense_Mutation p.R618P 0.31 deleterious(0.05) benign(0.362) TCGA-55-6642-01 5 54456928 54456928 T A GPX8 Nonsense_Mutation p.L104* 0.14 TCGA-55-6642-01 5 80724479 80724479 C A SSBP2 Silent p.L327L 0.33 TCGA-55-6642-01 5 94865853 94865853 A C TTC37 Missense_Mutation p.L278V 0.30 deleterious(0.05) benign(0.242) TCGA-55-6642-01 6 128306976 128306976 C A PTPRK Silent p.T1053T 0.19 TCGA-55-6642-01 6 16327605 16327605 G A ATXN1 Missense_Mutation p.R313W 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-6642-01 6 165715464 165715464 G T C6orf118 Missense_Mutation p.T116K 0.15 deleterious(0) probably_damaging(0.995) TCGA-55-6642-01 6 26271476 26271476 G T HIST1H3G Missense_Mutation p.T46N 0.17 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-55-6642-01 6 45870746 45870746 A T CLIC5 3'UTR 0.45 TCGA-55-6642-01 6 87725649 87725649 G T HTR1E Silent p.L199L 0.13 TCGA-55-6642-01 6 93956606 93956606 C A EPHA7 Missense_Mutation p.R877L 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-55-6642-01 7 110764827 110764827 C G LRRN3 Missense_Mutation p.Q667E 0.21 tolerated(0.05) benign(0.011) TCGA-55-6642-01 7 131859563 131859563 C A PLXNA4 Missense_Mutation p.D1331Y 0.34 deleterious(0) probably_damaging(0.975) TCGA-55-6642-01 7 149503133 149503133 G T SSPO RNA 0.13 TCGA-55-6642-01 7 27182704 27182704 G - HOXA5 Frame_Shift_Del p.Q175Rfs*11 0.14 TCGA-55-6642-01 7 63720641 63720641 G T ZNF679 Nonsense_Mutation p.E28* 0.12 TCGA-55-6642-01 7 99758491 99758491 G A GAL3ST4 Missense_Mutation p.S174F 0.12 tolerated(0.07) probably_damaging(0.909) TCGA-55-6642-01 8 22105494 22105494 G T POLR3D Missense_Mutation p.G112C 0.39 deleterious(0.05) probably_damaging(0.958) TCGA-55-6642-01 8 43171053 43171053 A T POTEA RNA 0.30 TCGA-55-6642-01 9 109701363 109701363 G T ZNF462 Silent p.P2134P 0.14 TCGA-55-6642-01 9 131231471 131231471 C T ODF2 Missense_Mutation p.H87Y 0.18 tolerated(0.07) probably_damaging(0.968) TCGA-55-6642-01 9 136323143 136323143 C G ADAMTS13 Missense_Mutation p.A1335G 0.11 tolerated(0.11) benign(0.021) TCGA-55-6642-01 9 138713008 138713008 C A CAMSAP1 Missense_Mutation p.D1167Y 0.13 deleterious(0.01) possibly_damaging(0.55) TCGA-55-6642-01 9 40702806 40702806 C A SPATA31A3 Missense_Mutation p.P155T 0.12 deleterious(0.04) probably_damaging(0.958) TCGA-55-6642-01 9 84607546 84607546 G T SPATA31D1 Nonsense_Mutation p.E721* 0.16 TCGA-55-6642-01 X 101818193 101818193 G T NXF4 RNA 0.42 TCGA-55-6642-01 X 104463895 104463895 T A TEX13A Silent p.P327P 0.51 TCGA-55-6642-01 X 144905997 144905997 A T SLITRK2 Missense_Mutation p.Y685F 0.47 deleterious(0) possibly_damaging(0.861) TCGA-55-6642-01 X 153060161 153060161 C G SSR4 Missense_Mutation p.L7V 0.56 tolerated(1) unknown(0) TCGA-55-6642-01 X 38664680 38664681 CT - MID1IP1 Frame_Shift_Del p.L161Hfs*9 0.41 TCGA-55-6642-01 X 47918714 47918714 T G ZNF630 Missense_Mutation p.K373Q 0.60 deleterious(0) probably_damaging(0.98) TCGA-55-6712-01 10 129676623 129676623 G A CLRN3 Silent p.S157S 0.19 TCGA-55-6712-01 10 21108395 21108395 C T NEBL Silent p.P671P 0.25 TCGA-55-6712-01 10 21806753 21806753 T G SKIDA1 5'UTR 0.17 TCGA-55-6712-01 10 22015199 22015199 C T MLLT10 Silent p.L635L 0.09 TCGA-55-6712-01 10 25304914 25304914 C G ENKUR 5'UTR 0.07 TCGA-55-6712-01 10 27537149 27537149 G T RP11-85G18.6 Intron 0.09 TCGA-55-6712-01 10 50819573 50819573 G A SLC18A3 Missense_Mutation p.A263T 0.16 tolerated(0.12) benign(0.098) TCGA-55-6712-01 10 50819935 50819935 A T SLC18A3 Silent p.L383L 0.23 TCGA-55-6712-01 10 56367708 56367708 C G PCDH15 Intron 0.15 TCGA-55-6712-01 10 88213425 88213442 TTAAATTAAGCAACACCC - WAPAL In_Frame_Del p.G935_T941delinsA 0.10 TCGA-55-6712-01 11 105795124 105795124 G C GRIA4 Splice_Site p.X493_splice 0.09 TCGA-55-6712-01 11 111958662 111958662 G A SDHD Missense_Mutation p.G45E 0.06 tolerated(0.29) benign(0.297) TCGA-55-6712-01 11 120833308 120833308 G T GRIK4 Missense_Mutation p.E728D 0.15 tolerated(0.08) probably_damaging(0.942) TCGA-55-6712-01 11 124189796 124189796 G C OR8D2 Missense_Mutation p.Q100E 0.06 deleterious(0) probably_damaging(0.952) TCGA-55-6712-01 11 27520959 27520959 C T LIN7C Missense_Mutation p.D129N 0.18 deleterious(0.01) benign(0.039) TCGA-55-6712-01 11 3380601 3380601 C G ZNF195 Missense_Mutation p.G546A 0.13 deleterious(0.02) probably_damaging(0.988) TCGA-55-6712-01 11 76885842 76885842 C A MYO7A Nonsense_Mutation p.S659* 0.21 TCGA-55-6712-01 11 7722003 7722003 C A OVCH2 Silent p.R247R 0.33 TCGA-55-6712-01 11 82645329 82645329 T G C11orf82 Silent p.P983P 0.12 TCGA-55-6712-01 11 93469869 93469869 G C TAF1D Missense_Mutation p.I228M 0.05 deleterious(0) probably_damaging(0.975) TCGA-55-6712-01 12 106632707 106632707 G C CKAP4 3'UTR 0.10 TCGA-55-6712-01 12 112485592 112485592 G A NAA25 Missense_Mutation p.S628L 0.27 tolerated(0.64) benign(0.17) TCGA-55-6712-01 12 124957515 124957516 - A NCOR2 Frame_Shift_Ins p.K192* 0.09 TCGA-55-6712-01 12 133209087 133209087 G C POLE Missense_Mutation p.I2048M 0.23 tolerated(0.16) benign(0.017) TCGA-55-6712-01 12 2566832 2566832 C T CACNA1C Silent p.F239F 0.06 TCGA-55-6712-01 12 45173775 45173775 C A NELL2 Silent p.R172R 0.11 TCGA-55-6712-01 12 52310003 52310003 G A ACVRL1 Missense_Mutation p.R411Q 0.12 deleterious(0) probably_damaging(1) TCGA-55-6712-01 12 53227843 53227843 G T KRT79 Missense_Mutation p.H68N 0.13 tolerated(0.51) benign(0) TCGA-55-6712-01 12 7016626 7016626 G A LRRC23 Intron 0.15 TCGA-55-6712-01 12 71531774 71531774 C T TSPAN8 Missense_Mutation p.E135K 0.07 tolerated(0.37) benign(0.103) TCGA-55-6712-01 12 80704403 80704403 G A OTOGL Missense_Mutation p.D1107N 0.10 tolerated(0.33) benign(0.001) TCGA-55-6712-01 13 101797225 101797225 G A NALCN Missense_Mutation p.A621V 0.12 tolerated(0.05) possibly_damaging(0.556) TCGA-55-6712-01 13 101944380 101944380 C A NALCN Missense_Mutation p.W336C 0.12 deleterious(0) probably_damaging(0.997) TCGA-55-6712-01 13 101944381 101944381 C T NALCN Nonsense_Mutation p.W336* 0.12 TCGA-55-6712-01 14 24545604 24545604 G C CPNE6 Missense_Mutation p.R365P 0.23 deleterious(0) probably_damaging(0.942) TCGA-55-6712-01 14 69256498 69256498 C A ZFP36L1 Nonsense_Mutation p.E257* 0.07 TCGA-55-6712-01 14 74424915 74424915 G A COQ6 Missense_Mutation p.A183T 0.07 tolerated(0.45) benign(0.002) TCGA-55-6712-01 14 96954772 96954772 C T AK7 3'UTR 0.21 TCGA-55-6712-01 15 24921547 24921547 C - NPAP1 Frame_Shift_Del p.S181Afs*41 0.20 TCGA-55-6712-01 15 25221561 25221561 G T SNRPN Missense_Mutation p.D89Y 0.16 deleterious(0) probably_damaging(0.957) TCGA-55-6712-01 15 42042623 42042629 ACTTACT - MGA Frame_Shift_Del p.H2273Rfs*60 0.24 TCGA-55-6712-01 15 42052655 42052655 C G MGA Silent p.L2442L 0.04 TCGA-55-6712-01 15 42127270 42127270 G A JMJD7-PLA2G4B Silent p.L107L 0.24 TCGA-55-6712-01 15 77406519 77406519 C G PEAK1 Silent p.V1740V 0.04 TCGA-55-6712-01 15 81171078 81171078 T G KIAA1199 Silent p.P37P 0.09 TCGA-55-6712-01 15 91512758 91512758 C G PRC1 Silent p.L556L 0.08 TCGA-55-6712-01 15 91769556 91769556 C T SV2B Silent p.R21R 0.18 TCGA-55-6712-01 16 20648732 20648732 C T ACSM1 Silent p.P386P 0.20 TCGA-55-6712-01 16 2569287 2569287 G A RP11-20I23.1 Missense_Mutation p.G345E 0.09 unknown(0) TCGA-55-6712-01 16 31408920 31408920 G A ITGAD Missense_Mutation p.R82H 0.19 deleterious(0.03) benign(0.001) TCGA-55-6712-01 16 3433615 3433615 C T ZSCAN32 Missense_Mutation p.G232E 0.07 tolerated(1) benign(0.003) TCGA-55-6712-01 16 51174513 51174513 G T SALL1 Missense_Mutation p.S540R 0.19 deleterious(0) possibly_damaging(0.459) TCGA-55-6712-01 16 53348933 53348933 G A CHD9 Missense_Mutation p.E2505K 0.06 unknown(0) TCGA-55-6712-01 16 55361654 55361654 C T IRX6 Silent p.L190L 0.09 TCGA-55-6712-01 16 69189791 69189791 C G CIRH1A Missense_Mutation p.I394M 0.04 tolerated(0.2) benign(0.252) TCGA-55-6712-01 17 10354166 10354166 C T MYH4 Silent p.Q1304Q 0.24 TCGA-55-6712-01 17 15619791 15619791 C G ZNF286A Silent p.L251L 0.10 TCGA-55-6712-01 17 34304500 34304500 C T CCL16 3'UTR 0.23 TCGA-55-6712-01 17 34304603 34304603 C T CCL16 Silent p.%3D 0.22 TCGA-55-6712-01 17 37187588 37187588 C T CTD-2206N4.2 5'Flank 0.05 TCGA-55-6712-01 17 41905172 41905172 G A MPP3 Missense_Mutation p.S157L 0.13 deleterious(0) benign(0.411) TCGA-55-6712-01 17 65144729 65144729 C G HELZ Missense_Mutation p.R859S 0.06 deleterious(0) possibly_damaging(0.908) TCGA-55-6712-01 17 67079099 67079099 C G ABCA6 Missense_Mutation p.E1511Q 0.07 tolerated(0.06) benign(0.178) TCGA-55-6712-01 17 7574012 7574012 C - TP53 Frame_Shift_Del p.E339Rfs*6 0.22 TCGA-55-6712-01 17 7637925 7637925 A G DNAH2 Missense_Mutation p.K293E 0.16 benign(0.014) TCGA-55-6712-01 17 77755652 77755652 G T CBX2 Intron 0.11 TCGA-55-6712-01 17 79060372 79060372 G A BAIAP2 Missense_Mutation p.E161K 0.06 deleterious(0) probably_damaging(0.979) TCGA-55-6712-01 18 28588282 28588282 G A DSC3 Silent p.N491N 0.08 TCGA-55-6712-01 18 42281614 42281614 A T SETBP1 Silent p.G101G 0.15 TCGA-55-6712-01 18 53254359 53254359 C G TCF4 Missense_Mutation p.D99H 0.12 deleterious_low_confidence(0) possibly_damaging(0.712) TCGA-55-6712-01 18 641487 641487 G A CLUL1 Silent p.V385V 0.16 TCGA-55-6712-01 18 67365639 67365639 G C DOK6 Splice_Site p.X137_splice 0.16 TCGA-55-6712-01 18 8813163 8813163 G A SOGA2 Missense_Mutation p.D931N 0.23 deleterious(0.01) benign(0.3) TCGA-55-6712-01 19 13249157 13249157 G T NACC1 Missense_Mutation p.E507D 0.12 tolerated_low_confidence(0.19) benign(0.004) TCGA-55-6712-01 19 13249158 13249158 C T NACC1 Missense_Mutation p.H508Y 0.13 deleterious_low_confidence(0.01) benign(0.175) TCGA-55-6712-01 19 14830168 14830168 G A ZNF333 3'UTR 0.07 TCGA-55-6712-01 19 15997064 15997064 A G CYP4F2 Missense_Mutation p.F325L 0.17 deleterious(0.02) possibly_damaging(0.651) TCGA-55-6712-01 19 31770030 31770030 G A TSHZ3 Silent p.Y223Y 0.20 TCGA-55-6712-01 19 3546137 3546137 C G MFSD12 Missense_Mutation p.M408I 0.17 possibly_damaging(0.841) TCGA-55-6712-01 19 36940775 36940775 C T ZNF566 Missense_Mutation p.D122N 0.06 tolerated(0.27) benign(0.002) TCGA-55-6712-01 19 41078030 41078030 C G SPTBN4 Silent p.L2475L 0.07 TCGA-55-6712-01 19 9048000 9048000 G C MUC16 Missense_Mutation p.L11211V 0.22 benign(0.383) TCGA-55-6712-01 19 9071029 9071029 G A MUC16 Nonsense_Mutation p.Q5473* 0.11 TCGA-55-6712-01 19 9071370 9071370 G A MUC16 Missense_Mutation p.P5359L 0.11 unknown(0) TCGA-55-6712-01 1 11227550 11227550 C G MTOR Silent p.P1426P 0.04 TCGA-55-6712-01 1 158577073 158577073 C - OR10Z1 Frame_Shift_Del p.L284Sfs*9 0.10 TCGA-55-6712-01 1 170695400 170695400 G C PRRX1 Missense_Mutation p.E153Q 0.16 deleterious(0) benign(0.115) TCGA-55-6712-01 1 171077331 171077331 T C FMO3 Missense_Mutation p.I199T 0.08 deleterious(0.01) possibly_damaging(0.531) TCGA-55-6712-01 1 173155820 173155820 C T TNFSF4 Silent p.L129L 0.20 TCGA-55-6712-01 1 175355363 175355363 G A TNR Nonsense_Mutation p.R528* 0.20 TCGA-55-6712-01 1 178489911 178489911 G C TEX35 Missense_Mutation p.V149L 0.06 tolerated_low_confidence(0.15) benign(0.006) TCGA-55-6712-01 1 182615944 182615944 C G RGS8 Missense_Mutation p.D175H 0.22 deleterious(0) probably_damaging(0.999) TCGA-55-6712-01 1 183502430 183502430 G T SMG7 Missense_Mutation p.Q325H 0.17 deleterious(0.02) possibly_damaging(0.893) TCGA-55-6712-01 1 19209814 19209814 C A ALDH4A1 Missense_Mutation p.V188L 0.22 tolerated(0.33) benign(0.015) TCGA-55-6712-01 1 200817734 200817734 C G CAMSAP2 Missense_Mutation p.H613D 0.11 deleterious(0.03) probably_damaging(0.975) TCGA-55-6712-01 1 216062258 216062258 G A USH2A Missense_Mutation p.T2578I 0.12 benign(0.026) TCGA-55-6712-01 1 216348701 216348701 G T USH2A Nonsense_Mutation p.S1507* 0.24 TCGA-55-6712-01 1 224495875 224495875 C T NVL Missense_Mutation p.E145K 0.06 tolerated(0.24) benign(0.005) TCGA-55-6712-01 1 234529176 234529176 G A TARBP1 Nonsense_Mutation p.Q1498* 0.08 TCGA-55-6712-01 1 236646636 236646636 A G EDARADD 3'Flank 0.07 TCGA-55-6712-01 1 237617733 237617733 C A RYR2 Silent p.V445V 0.20 TCGA-55-6712-01 1 248224188 248224188 G C OR2L3 Missense_Mutation p.D69H 0.10 deleterious(0) probably_damaging(0.946) TCGA-55-6712-01 1 42621290 42621290 C A GUCA2B 3'UTR 0.23 TCGA-55-6712-01 1 46656198 46656198 G C POMGNT1 Intron 0.04 TCGA-55-6712-01 1 62237198 62237198 A G INADL Missense_Mutation p.Q207R 0.18 tolerated(0.07) probably_damaging(1) TCGA-55-6712-01 1 6528641 6528641 G C PLEKHG5 Nonsense_Mutation p.S831* 0.07 TCGA-55-6712-01 20 2636241 2636241 G T NOP56 Missense_Mutation p.G253V 0.11 deleterious(0) probably_damaging(1) TCGA-55-6712-01 20 30804435 30804435 C T POFUT1 Silent p.F151F 0.10 TCGA-55-6712-01 21 32007755 32007755 G C KRTAP20-2 Missense_Mutation p.R58T 0.06 unknown(0) TCGA-55-6712-01 21 37617525 37617525 G A DOPEY2 Missense_Mutation p.E1083K 0.13 tolerated(0.2) benign(0.001) TCGA-55-6712-01 21 40768888 40768888 G A WRB 3'UTR 0.09 TCGA-55-6712-01 21 46057941 46057941 T A KRTAP10-10 Missense_Mutation p.C203S 0.32 deleterious(0.01) possibly_damaging(0.771) TCGA-55-6712-01 21 47706941 47706941 G C YBEY Silent p.G38G 0.08 TCGA-55-6712-01 22 19865699 19865699 C G TXNRD2 Silent p.L453L 0.09 TCGA-55-6712-01 22 22550502 22550502 C T IGLV6-57 Missense_Mutation p.P60L 0.09 deleterious_low_confidence(0.02) benign(0.093) TCGA-55-6712-01 2 1418189 1418189 G A TPO Silent p.A3A 0.17 TCGA-55-6712-01 2 155555493 155555493 C G KCNJ3 Missense_Mutation p.S69W 0.25 deleterious(0) probably_damaging(0.978) TCGA-55-6712-01 2 155555552 155555552 C A KCNJ3 Missense_Mutation p.L89I 0.15 deleterious(0.02) possibly_damaging(0.517) TCGA-55-6712-01 2 179468736 179468736 C T TTN Silent p.L18226L 0.07 TCGA-55-6712-01 2 201284103 201284103 G C SPATS2L Missense_Mutation p.G110A 0.15 deleterious(0.03) benign(0.012) TCGA-55-6712-01 2 201873785 201873785 C G FAM126B Missense_Mutation p.L147F 0.09 deleterious(0) probably_damaging(0.919) TCGA-55-6712-01 2 202153270 202153270 G C ALS2CR12 3'UTR 0.26 TCGA-55-6712-01 2 204267336 204267336 C G ABI2 Silent p.A290A 0.19 TCGA-55-6712-01 2 37217795 37217795 G C HEATR5B Missense_Mutation p.P1898R 0.12 tolerated(0.06) possibly_damaging(0.884) TCGA-55-6712-01 2 43779386 43779386 G A THADA Nonsense_Mutation p.R923* 0.18 TCGA-55-6712-01 2 73448960 73448960 G C SMYD5 Missense_Mutation p.D182H 0.07 deleterious(0.03) possibly_damaging(0.531) TCGA-55-6712-01 2 74733992 74733992 C T PCGF1 Silent p.V73V 0.13 TCGA-55-6712-01 3 14508105 14508105 G T SLC6A6 Missense_Mutation p.A272S 0.23 deleterious(0.04) benign(0.023) TCGA-55-6712-01 3 193081170 193081170 T A ATP13A5 Missense_Mutation p.D80V 0.19 deleterious(0) probably_damaging(0.999) TCGA-55-6712-01 3 195404612 195404612 C T SDHAP2 RNA 0.26 TCGA-55-6712-01 3 3139822 3139822 T C IL5RA Missense_Mutation p.R174G 0.19 deleterious(0) probably_damaging(0.992) TCGA-55-6712-01 3 64507906 64507906 C T ADAMTS9 Missense_Mutation p.G1917S 0.18 deleterious(0) probably_damaging(1) TCGA-55-6712-01 3 99890704 99890704 A G CMSS1 Silent p.G180G 0.19 TCGA-55-6712-01 4 100774382 100774382 G A DAPP1 Silent p.L122L 0.09 TCGA-55-6712-01 4 126372722 126372722 C G FAT4 Silent p.V3517V 0.05 TCGA-55-6712-01 4 156135229 156135229 G A NPY2R Silent p.L46L 0.15 TCGA-55-6712-01 4 169432721 169432721 G T PALLD Missense_Mutation p.K22N 0.11 tolerated(0.28) benign(0.007) TCGA-55-6712-01 4 187122497 187122497 G T CYP4V2 Splice_Site p.X329_splice 0.11 TCGA-55-6712-01 4 55146502 55146502 G C PDGFRA Missense_Mutation p.E726Q 0.08 tolerated(0.05) probably_damaging(1) TCGA-55-6712-01 4 71066318 71066318 G T ODAM Missense_Mutation p.Q176H 0.20 deleterious(0) possibly_damaging(0.891) TCGA-55-6712-01 4 85687162 85687162 C T WDFY3 Silent p.V1663V 0.06 TCGA-55-6712-01 4 86893267 86893267 G C ARHGAP24 Silent p.A226A 0.08 TCGA-55-6712-01 4 88116721 88116721 C T KLHL8 5'UTR 0.10 TCGA-55-6712-01 5 112337369 112337369 G A DCP2 Silent p.L268L 0.08 TCGA-55-6712-01 5 138661298 138661298 A G MATR3 Missense_Mutation p.Y773C 0.07 tolerated(0.15) benign(0.19) TCGA-55-6712-01 5 140501869 140501869 C G PCDHB4 Missense_Mutation p.P97A 0.27 tolerated_low_confidence(0.25) benign(0.003) TCGA-55-6712-01 5 140579307 140579307 G C PCDHB11 5'Flank 0.20 TCGA-55-6712-01 5 140736874 140736874 G A PCDHGA4 Missense_Mutation p.V703I 0.36 tolerated_low_confidence(0.18) benign(0.046) TCGA-55-6712-01 5 140740398 140740398 C T PCDHGB2 Silent p.V232V 0.13 TCGA-55-6712-01 5 167673884 167673884 C T TENM2 Silent p.I1980I 0.22 TCGA-55-6712-01 5 41160464 41160464 G T C6 Silent p.A488A 0.18 TCGA-55-6712-01 5 59901643 59901643 C G DEPDC1B Missense_Mutation p.Q313H 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-55-6712-01 5 79026143 79026143 C A CMYA5 Missense_Mutation p.P519T 0.22 possibly_damaging(0.908) TCGA-55-6712-01 6 117647511 117647511 G A ROS1 Silent p.C1811C 0.13 TCGA-55-6712-01 6 125139557 125139557 C G NKAIN2 Missense_Mutation p.S187C 0.15 deleterious(0.03) probably_damaging(0.997) TCGA-55-6712-01 6 131973770 131973770 G A ENPP3 Silent p.R122R 0.11 TCGA-55-6712-01 6 131973774 131973774 G A ENPP3 Missense_Mutation p.D124N 0.11 tolerated(0.08) probably_damaging(1) TCGA-55-6712-01 6 145156988 145156988 G C UTRN Missense_Mutation p.Q3246H 0.07 deleterious(0) probably_damaging(0.998) TCGA-55-6712-01 6 151789867 151789867 G A C6orf211 Silent p.G316G 0.11 TCGA-55-6712-01 6 29556336 29556336 G C OR2H2 Missense_Mutation p.L205F 0.09 deleterious(0.04) benign(0.059) TCGA-55-6712-01 6 42935114 42935114 G A PEX6 Missense_Mutation p.R626W 0.09 deleterious(0) possibly_damaging(0.776) TCGA-55-6712-01 6 66204732 66204732 C A EYS Missense_Mutation p.S191I 0.19 tolerated(0.14) benign(0.025) TCGA-55-6712-01 6 70944631 70944631 C G COL9A1 Missense_Mutation p.G709R 0.20 probably_damaging(0.993) TCGA-55-6712-01 6 80636031 80636031 A C ELOVL4 Nonsense_Mutation p.Y56* 0.09 TCGA-55-6712-01 6 90578701 90578701 C G CASP8AP2 RNA 0.17 TCGA-55-6712-01 6 97053872 97053872 C T FHL5 Silent p.I143I 0.07 TCGA-55-6712-01 7 100275742 100275742 A T GNB2 Silent p.T173T 0.22 TCGA-55-6712-01 7 100345986 100345986 C A ZAN Missense_Mutation p.P381H 0.22 probably_damaging(1) TCGA-55-6712-01 7 100861385 100861385 A C ZNHIT1 5'UTR 0.24 TCGA-55-6712-01 7 116435946 116435946 A G MET Missense_Mutation p.E1332G 0.19 tolerated(0.3) probably_damaging(0.997) TCGA-55-6712-01 7 117282538 117282538 C G CFTR Nonsense_Mutation p.S1255* 0.08 TCGA-55-6712-01 7 127240303 127240303 C A FSCN3 Silent p.G449G 0.16 TCGA-55-6712-01 7 140301553 140301553 C G DENND2A Missense_Mutation p.Q215H 0.04 tolerated(0.13) benign(0.17) TCGA-55-6712-01 7 154738478 154738478 T C PAXIP1 Missense_Mutation p.T990A 0.19 tolerated(0.2) unknown(0) TCGA-55-6712-01 7 16841359 16841359 C G AGR2 Missense_Mutation p.R21T 0.20 tolerated(0.14) benign(0.005) TCGA-55-6712-01 7 2697955 2697955 C T TTYH3 Missense_Mutation p.P429L 0.10 deleterious(0.03) benign(0.006) TCGA-55-6712-01 7 28858876 28858876 G T CREB5 Missense_Mutation p.D503Y 0.09 deleterious(0) unknown(0) TCGA-55-6712-01 7 4273011 4273011 G A SDK1 Silent p.A1984A 0.06 TCGA-55-6712-01 7 47870862 47870862 C T PKD1L1 Silent p.G2142G 0.30 TCGA-55-6712-01 7 57188673 57188673 G C ZNF479 Nonsense_Mutation p.S150* 0.07 TCGA-55-6712-01 7 73280192 73280193 CC - WBSCR28 Frame_Shift_Del p.P263Qfs*? 0.18 TCGA-55-6712-01 7 8062112 8062112 G A GLCCI1 Splice_Site p.X204_splice 0.08 TCGA-55-6712-01 7 94038733 94038733 G T COL1A2 Splice_Site p.X297_splice 0.26 TCGA-55-6712-01 7 94989416 94989416 C T PON3 Missense_Mutation p.E312K 0.08 tolerated(0.08) benign(0.001) TCGA-55-6712-01 7 99956586 99956586 C G PILRB Nonsense_Mutation p.S113* 0.07 TCGA-55-6712-01 8 100994288 100994288 A G RGS22 Silent p.I1079I 0.24 TCGA-55-6712-01 8 10464923 10464923 C T RP1L1 Missense_Mutation p.E2229K 0.09 unknown(0) TCGA-55-6712-01 8 132958769 132958769 C T EFR3A Silent p.L85L 0.12 TCGA-55-6712-01 8 133849973 133849973 G T PHF20L1 Missense_Mutation p.C703F 0.15 deleterious(0) probably_damaging(0.962) TCGA-55-6712-01 8 144733502 144733502 A G ZNF623 Missense_Mutation p.Y487C 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-55-6712-01 8 145724389 145724389 C T PPP1R16A Silent p.L141L 0.09 TCGA-55-6712-01 8 30704595 30704595 C T TEX15 Missense_Mutation p.E647K 0.33 tolerated(0.14) probably_damaging(0.913) TCGA-55-6712-01 8 53569134 53569134 C T RB1CC1 Silent p.Q1085Q 0.17 TCGA-55-6712-01 8 75227253 75227253 C T JPH1 Missense_Mutation p.E328K 0.06 deleterious(0) probably_damaging(0.99) TCGA-55-6712-01 8 87076709 87076709 G A PSKH2 Missense_Mutation p.R113W 0.14 tolerated(0.12) benign(0.117) TCGA-55-6712-01 9 86903009 86903009 C G SLC28A3 Missense_Mutation p.E412Q 0.04 deleterious(0.01) possibly_damaging(0.817) TCGA-55-6712-01 9 90315030 90315037 AGGTTTGG - DAPK1 Splice_Site p.X917_splice 0.17 TCGA-55-6712-01 X 117079539 117079539 C G KLHL13 Splice_Site p.X36_splice 0.26 TCGA-55-6712-01 X 130420592 130420592 C A IGSF1 Missense_Mutation p.L19F 0.10 deleterious(0.02) benign(0.019) TCGA-55-6712-01 X 154507140 154507140 C G CLIC2 3'UTR 0.10 TCGA-55-6712-01 X 19560190 19560190 C G SH3KBP1 Missense_Mutation p.G582A 0.29 tolerated(0.26) possibly_damaging(0.794) TCGA-55-6712-01 X 55170248 55170248 G C FAM104B 3'Flank 0.24 TCGA-55-6712-01 X 75648398 75648398 G T MAGEE1 Missense_Mutation p.W25C 0.78 deleterious_low_confidence(0.02) benign(0.431) TCGA-55-6712-01 X 86921487 86921487 A G KLHL4 Intron 0.07 TCGA-55-6968-01 10 102239763 102239763 C T WNT8B Missense_Mutation p.R79C 0.23 deleterious(0) probably_damaging(0.953) TCGA-55-6968-01 10 105362787 105362787 C A SH3PXD2A Missense_Mutation p.G702C 0.25 deleterious_low_confidence(0.03) probably_damaging(0.971) TCGA-55-6968-01 10 106075326 106075326 C T ITPRIP Missense_Mutation p.E162K 0.20 deleterious(0) probably_damaging(0.979) TCGA-55-6968-01 10 121616902 121616902 C G MCMBP Missense_Mutation p.R126T 0.06 deleterious(0) probably_damaging(0.956) TCGA-55-6968-01 10 124348691 124348691 C T DMBT1 Missense_Mutation p.S672L 0.24 tolerated(0.08) unknown(0) TCGA-55-6968-01 10 129904597 129904597 C G MKI67 Missense_Mutation p.R1836T 0.09 tolerated(0.06) benign(0.245) TCGA-55-6968-01 10 135116332 135116332 C A TUBGCP2 Silent p.P38P 0.31 TCGA-55-6968-01 10 17750819 17750819 G A STAM Silent p.G418G 0.16 TCGA-55-6968-01 10 27536578 27536578 C T RP11-85G18.6 Intron 0.18 TCGA-55-6968-01 10 27536594 27536594 C T RP11-85G18.6 Intron 0.23 TCGA-55-6968-01 10 27537382 27537382 C T RP11-85G18.6 Intron 0.26 TCGA-55-6968-01 10 29578041 29578041 C A LYZL1 5'UTR 0.20 TCGA-55-6968-01 10 59955775 59955775 G C IPMK 3'UTR 0.09 TCGA-55-6968-01 10 61844362 61844362 C T ANK3 Missense_Mutation p.E1358K 0.27 probably_damaging(0.995) TCGA-55-6968-01 10 69672519 69672519 C T SIRT1 Missense_Mutation p.S549F 0.25 deleterious(0.02) possibly_damaging(0.635) TCGA-55-6968-01 10 71176135 71176135 C A TACR2 5'UTR 0.31 TCGA-55-6968-01 10 7820891 7820891 C A KIN Missense_Mutation p.E156D 0.05 tolerated(0.35) possibly_damaging(0.491) TCGA-55-6968-01 10 79576825 79576825 C T DLG5 Missense_Mutation p.E1272K 0.08 deleterious(0.01) probably_damaging(0.991) TCGA-55-6968-01 10 82126470 82126470 G A DYDC2 Silent p.T113T 0.06 TCGA-55-6968-01 10 82280366 82280366 C G TSPAN14 3'UTR 0.09 TCGA-55-6968-01 10 87966293 87966293 G C GRID1 Silent p.V116V 0.29 TCGA-55-6968-01 10 88820737 88820737 C A GLUD1 Nonsense_Mutation p.E332* 0.26 TCGA-55-6968-01 10 89504826 89504826 C T PAPSS2 Missense_Mutation p.A520V 0.10 deleterious(0) possibly_damaging(0.824) TCGA-55-6968-01 10 90699209 90699209 G C ACTA2 Intron 0.31 TCGA-55-6968-01 10 98411299 98411299 G - PIK3AP1 Frame_Shift_Del p.N275Mfs*27 0.18 TCGA-55-6968-01 10 98741554 98741554 C G C10orf12 Nonsense_Mutation p.S136* 0.32 TCGA-55-6968-01 11 108348424 108348424 T C KDELC2 Silent p.E436E 0.05 TCGA-55-6968-01 11 110036067 110036067 G A ZC3H12C Missense_Mutation p.D753N 0.08 tolerated(0.07) probably_damaging(0.999) TCGA-55-6968-01 11 113934272 113934272 C G ZBTB16 Missense_Mutation p.L84V 0.37 deleterious(0) probably_damaging(0.998) TCGA-55-6968-01 11 118972266 118972266 C T DPAGT1 Missense_Mutation p.G34S 0.28 tolerated(0.33) benign(0) TCGA-55-6968-01 11 122817324 122817324 G A C11orf63 Missense_Mutation p.E585K 0.14 tolerated(0.08) benign(0.048) TCGA-55-6968-01 11 123909297 123909297 G T OR10G7 Missense_Mutation p.R138S 0.33 tolerated(0.07) benign(0.023) TCGA-55-6968-01 11 125351440 125351440 G C FEZ1 Missense_Mutation p.S134C 0.22 deleterious(0.01) probably_damaging(0.979) TCGA-55-6968-01 11 1466885 1466885 C A BRSK2 Silent p.P400P 0.50 TCGA-55-6968-01 11 14989264 14989264 G T CALCA 3'Flank 0.09 TCGA-55-6968-01 11 33163373 33163373 G A CSTF3 Intron 0.25 TCGA-55-6968-01 11 47765529 47765529 C T FNBP4 Missense_Mutation p.D478N 0.06 deleterious(0.05) benign(0.131) TCGA-55-6968-01 11 4936710 4936710 C T OR51G2 Missense_Mutation p.E62K 0.10 tolerated(0.05) benign(0.013) TCGA-55-6968-01 11 4945335 4945335 T A OR51G1 Missense_Mutation p.T79S 0.24 deleterious(0.04) possibly_damaging(0.618) TCGA-55-6968-01 11 5152984 5152985 CT - OR52A5 Frame_Shift_Del p.V297Efs*7 0.34 TCGA-55-6968-01 11 5275654 5275654 G A HBG2 Silent p.V61V 0.12 TCGA-55-6968-01 11 55111359 55111359 A T OR4A16 Missense_Mutation p.Q228L 0.35 tolerated_low_confidence(0.21) benign(0.139) TCGA-55-6968-01 11 55418427 55418427 T C OR4S2 Silent p.S16S 0.36 TCGA-55-6968-01 11 55541196 55541196 T A OR5D13 Missense_Mutation p.S95T 0.25 deleterious(0.05) benign(0.082) TCGA-55-6968-01 11 5631423 5631423 G C TRIM6 Silent p.L302L 0.33 TCGA-55-6968-01 11 59211508 59211508 C A OR5A1 Missense_Mutation p.N289K 0.36 deleterious(0) probably_damaging(0.957) TCGA-55-6968-01 11 63987460 63987460 G A FERMT3 Missense_Mutation p.D397N 0.25 tolerated(0.23) benign(0.034) TCGA-55-6968-01 11 64676535 64676535 C G ATG2A Missense_Mutation p.E764D 0.33 tolerated(0.06) probably_damaging(0.955) TCGA-55-6968-01 11 65726425 65726425 G T SART1 5'Flank 0.26 TCGA-55-6968-01 11 66235688 66235688 C G PELI3 Missense_Mutation p.S30C 0.18 deleterious_low_confidence(0.03) benign(0.001) TCGA-55-6968-01 11 71259802 71259802 C A KRTAP5-9 Silent p.P33P 0.29 TCGA-55-6968-01 11 78383281 78383281 G A TENM4 Silent p.L1864L 0.08 TCGA-55-6968-01 11 82996954 82996954 G C CCDC90B Nonsense_Mutation p.S21* 0.21 TCGA-55-6968-01 11 89059881 89059881 G T NOX4 3'UTR 0.25 TCGA-55-6968-01 11 970221 970221 C T AP2A2 Silent p.L63L 0.14 TCGA-55-6968-01 12 101017743 101017743 C G GAS2L3 Missense_Mutation p.S387C 0.27 deleterious(0.04) benign(0.016) TCGA-55-6968-01 12 10319365 10319365 G C OLR1 Missense_Mutation p.H124D 0.10 tolerated(0.11) benign(0.164) TCGA-55-6968-01 12 111748404 111748404 G A CUX2 Silent p.K606K 0.22 TCGA-55-6968-01 12 111954056 111954056 G C ATXN2 Missense_Mutation p.S586C 0.08 probably_damaging(0.998) TCGA-55-6968-01 12 112607317 112607317 G C HECTD4 Silent p.V3920V 0.29 TCGA-55-6968-01 12 112650422 112650422 C T HECTD4 Missense_Mutation p.E2354K 0.19 probably_damaging(0.92) TCGA-55-6968-01 12 120800894 120800894 C T MSI1 Silent p.V118V 0.32 TCGA-55-6968-01 12 122758668 122758668 C G CLIP1 Missense_Mutation p.K1336N 0.06 deleterious(0) probably_damaging(0.989) TCGA-55-6968-01 12 123070236 123070236 C G KNTC1 Missense_Mutation p.F1196L 0.28 deleterious(0.01) probably_damaging(0.931) TCGA-55-6968-01 12 124298118 124298118 G A DNAH10 Silent p.V1066V 0.10 TCGA-55-6968-01 12 130898825 130898825 G A RIMBP2 Missense_Mutation p.P833S 0.05 deleterious(0.03) possibly_damaging(0.589) TCGA-55-6968-01 12 132547189 132547189 G T EP400 Missense_Mutation p.Q2759H 0.36 benign(0.387) TCGA-55-6968-01 12 133721066 133721066 G C CTD-2140B24.4 5'UTR 0.23 TCGA-55-6968-01 12 20807022 20807022 C A PDE3A Missense_Mutation p.P1023T 0.26 deleterious(0) probably_damaging(0.999) TCGA-55-6968-01 12 21011461 21011461 A C LST3 Silent p.G105G 0.15 TCGA-55-6968-01 12 21207557 21207557 G A SLCO1B7 Missense_Mutation p.V510M 0.21 tolerated(1) benign(0.003) TCGA-55-6968-01 12 21329800 21329800 C T SLCO1B1 Silent p.L150L 0.41 TCGA-55-6968-01 12 22013934 22013934 A T ABCC9 Missense_Mutation p.F799I 0.23 tolerated(0.4) benign(0.325) TCGA-55-6968-01 12 27234319 27234319 C T C12orf71 Missense_Mutation p.D200N 0.08 tolerated(0.06) possibly_damaging(0.857) TCGA-55-6968-01 12 32135390 32135390 G A KIAA1551 Missense_Mutation p.D501N 0.39 tolerated(1) benign(0) TCGA-55-6968-01 12 39947747 39947747 C G ABCD2 Silent p.L730L 0.17 TCGA-55-6968-01 12 48142645 48142645 G C RAPGEF3 Missense_Mutation p.Q371E 0.06 tolerated(0.69) benign(0.015) TCGA-55-6968-01 12 49110484 49110484 G A CCNT1 5'UTR 0.05 TCGA-55-6968-01 12 52180406 52180406 C T SCN8A Silent p.F1341F 0.11 TCGA-55-6968-01 12 53201515 53201515 C T KRT4 Missense_Mutation p.R420H 0.19 deleterious(0.01) benign(0.086) TCGA-55-6968-01 12 53683205 53683205 G A ESPL1 Missense_Mutation p.R1647Q 0.09 tolerated(1) benign(0.002) TCGA-55-6968-01 12 53777373 53777373 C T SP1 Nonsense_Mutation p.Q548* 0.28 TCGA-55-6968-01 12 56522111 56522111 G A ESYT1 Missense_Mutation p.R3Q 0.29 tolerated(0.12) probably_damaging(0.947) TCGA-55-6968-01 12 57559724 57559724 C T LRP1 Silent p.L889L 0.39 TCGA-55-6968-01 12 57589536 57589536 G C LRP1 Missense_Mutation p.D2845H 0.06 benign(0.186) TCGA-55-6968-01 12 58126703 58126703 C T AGAP2 Missense_Mutation p.A537T 0.04 tolerated(1) benign(0.001) TCGA-55-6968-01 12 59270273 59270273 G A LRIG3 Silent p.V883V 0.21 TCGA-55-6968-01 12 66638404 66638404 A G IRAK3 Silent p.P342P 0.31 TCGA-55-6968-01 12 6710617 6710617 T C CHD4 Missense_Mutation p.S213G 0.10 deleterious(0.01) possibly_damaging(0.787) TCGA-55-6968-01 12 6978532 6978532 C G TPI1 Missense_Mutation p.F182L 0.33 tolerated(0.14) possibly_damaging(0.762) TCGA-55-6968-01 12 88442990 88442990 C T CEP290 Missense_Mutation p.E2471K 0.07 benign(0.286) TCGA-55-6968-01 13 102220091 102220091 G A ITGBL1 Missense_Mutation p.G120R 0.19 deleterious(0) probably_damaging(0.993) TCGA-55-6968-01 13 103249427 103249427 C T TPP2 Silent p.H13H 0.29 TCGA-55-6968-01 13 103459678 103459678 G C BIVM Missense_Mutation p.E21Q 0.08 tolerated_low_confidence(0.45) possibly_damaging(0.49) TCGA-55-6968-01 13 103698401 103698401 C G SLC10A2 3'UTR 0.19 TCGA-55-6968-01 13 111767996 111767996 C G ARHGEF7 Silent p.L41L 0.29 TCGA-55-6968-01 13 113333727 113333727 C T C13orf35 Nonsense_Mutation p.Q12* 0.34 TCGA-55-6968-01 13 25338329 25338329 G C RNF17 5'UTR 0.23 TCGA-55-6968-01 13 39265120 39265120 C G FREM2 Silent p.L1213L 0.11 TCGA-55-6968-01 13 45589593 45589593 G T GPALPP1 Missense_Mutation p.E189D 0.30 tolerated(0.06) benign(0.073) TCGA-55-6968-01 13 48951166 48951166 C G RB1 Nonsense_Mutation p.S443* 0.56 TCGA-55-6968-01 13 84453783 84453783 C A SLITRK1 Missense_Mutation p.L620F 0.30 deleterious(0) probably_damaging(0.994) TCGA-55-6968-01 13 88330134 88330134 C T SLITRK5 Missense_Mutation p.P831S 0.23 tolerated(0.41) benign(0.016) TCGA-55-6968-01 13 95818482 95818482 G C ABCC4 Nonsense_Mutation p.S655* 0.05 TCGA-55-6968-01 13 96508411 96508411 C A UGGT2 Splice_Site p.X1336_splice 0.23 TCGA-55-6968-01 13 96553181 96553181 C T UGGT2 Silent p.K838K 0.25 TCGA-55-6968-01 14 100563832 100563832 T C EVL Silent p.Y65Y 0.43 TCGA-55-6968-01 14 100813098 100813098 C G WARS Missense_Mutation p.D271H 0.26 deleterious(0.01) probably_damaging(0.988) TCGA-55-6968-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.23 deleterious(0) probably_damaging(0.999) TCGA-55-6968-01 14 105414141 105414141 C T AHNAK2 Silent p.V2549V 0.06 TCGA-55-6968-01 14 106866462 106866462 G A IGHV3-38 Missense_Mutation p.L98F 0.06 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-55-6968-01 14 20389623 20389623 T C OR4K5 Silent p.I286I 0.24 TCGA-55-6968-01 14 21544746 21544746 C G ARHGEF40 Missense_Mutation p.Q621E 0.06 tolerated(0.08) benign(0.031) TCGA-55-6968-01 14 21796745 21796745 G T RPGRIP1 Nonsense_Mutation p.E1020* 0.29 TCGA-55-6968-01 14 21878105 21878105 C G CHD8 Missense_Mutation p.E757Q 0.17 deleterious(0) probably_damaging(0.996) TCGA-55-6968-01 14 23392302 23392302 G T PRMT5 Nonsense_Mutation p.Y481* 0.35 TCGA-55-6968-01 14 23609699 23609699 C T SLC7A8 Missense_Mutation p.E257K 0.08 deleterious(0) probably_damaging(0.913) TCGA-55-6968-01 14 33004780 33004780 T G AKAP6 Silent p.S115S 0.32 TCGA-55-6968-01 14 33293759 33293759 C T AKAP6 Missense_Mutation p.S2247L 0.08 tolerated_low_confidence(0.12) benign(0.008) TCGA-55-6968-01 14 37132476 37132476 C T PAX9 Silent p.L127L 0.12 TCGA-55-6968-01 14 45605262 45605262 C T FANCM Nonsense_Mutation p.Q10* 0.31 TCGA-55-6968-01 14 45645502 45645502 T A FANCM Missense_Mutation p.L1182H 0.28 tolerated(0.23) benign(0.041) TCGA-55-6968-01 14 51352564 51352564 A T ABHD12B Nonsense_Mutation p.R205* 0.22 TCGA-55-6968-01 14 60213200 60213200 C A RTN1 Splice_Site p.X81_splice 0.34 TCGA-55-6968-01 14 64676276 64676276 G C SYNE2 Missense_Mutation p.E6174Q 0.23 possibly_damaging(0.76) TCGA-55-6968-01 14 76012894 76012894 G A BATF Silent p.L86L 0.26 TCGA-55-6968-01 14 76621136 76621136 C G GPATCH2L Missense_Mutation p.Q144E 0.12 deleterious(0.03) possibly_damaging(0.885) TCGA-55-6968-01 14 76965199 76965199 G T ESRRB Intron 0.34 TCGA-55-6968-01 14 77257677 77257677 C G ANGEL1 Missense_Mutation p.E551Q 0.23 tolerated(0.47) benign(0.148) TCGA-55-6968-01 14 92280051 92280051 G C TC2N Missense_Mutation p.H21Q 0.21 tolerated(0.21) benign(0.003) TCGA-55-6968-01 14 94933622 94933622 C A SERPINA9 Missense_Mutation p.Q260H 0.21 deleterious(0.02) probably_damaging(0.966) TCGA-55-6968-01 14 95670730 95670730 G A CLMN Missense_Mutation p.S319F 0.05 deleterious(0.01) possibly_damaging(0.56) TCGA-55-6968-01 15 101718087 101718087 C G CHSY1 Missense_Mutation p.E639Q 0.09 tolerated(0.16) possibly_damaging(0.735) TCGA-55-6968-01 15 25230255 25230255 G A SNORD64 RNA 0.47 TCGA-55-6968-01 15 34147067 34147067 A T RYR3 Missense_Mutation p.K4654M 0.41 probably_damaging(0.992) TCGA-55-6968-01 15 42005481 42005481 C T MGA Nonsense_Mutation p.R1073* 0.42 TCGA-55-6968-01 15 48738907 48738907 A G FBN1 Silent p.C1928C 0.69 TCGA-55-6968-01 15 49716471 49716471 G A FGF7 5'UTR 0.25 TCGA-55-6968-01 15 52258570 52258570 C T LEO1 Missense_Mutation p.D64N 0.08 deleterious_low_confidence(0) possibly_damaging(0.628) TCGA-55-6968-01 15 52356583 52356583 G C MAPK6 Missense_Mutation p.E518Q 0.11 tolerated_low_confidence(0.22) benign(0.15) TCGA-55-6968-01 15 54307626 54307626 T A UNC13C Missense_Mutation p.N842K 0.65 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-55-6968-01 15 63335043 63335043 G A TPM1 Silent p.K5K 0.12 TCGA-55-6968-01 15 64716342 64716342 C G TRIP4 Missense_Mutation p.L491V 0.06 deleterious(0.03) benign(0.279) TCGA-55-6968-01 15 67878233 67878233 A C MAP2K5 Missense_Mutation p.K110Q 0.12 deleterious(0.01) probably_damaging(0.937) TCGA-55-6968-01 15 67878235 67878235 G C MAP2K5 Missense_Mutation p.K110N 0.12 deleterious(0) probably_damaging(0.953) TCGA-55-6968-01 15 74284588 74284588 C G STOML1 5'UTR 0.16 TCGA-55-6968-01 15 77317631 77317631 G A PSTPIP1 Silent p.L73L 0.34 TCGA-55-6968-01 15 78921963 78921963 G C CHRNB4 Missense_Mutation p.I228M 0.06 tolerated(0.18) probably_damaging(0.925) TCGA-55-6968-01 15 79292245 79292245 G C RASGRF1 Silent p.L878L 0.24 TCGA-55-6968-01 15 83527843 83527843 G A HOMER2 Silent p.A155A 0.23 TCGA-55-6968-01 15 90799390 90799390 C T TTLL13 Missense_Mutation p.S189F 0.06 tolerated(0.05) benign(0.123) TCGA-55-6968-01 16 108383 108383 C T RHBDF1 Missense_Mutation p.D842N 0.12 tolerated(0.18) possibly_damaging(0.735) TCGA-55-6968-01 16 20996849 20996849 G A DNAH3 Silent p.S2405S 0.07 TCGA-55-6968-01 16 21764365 21764365 G T OTOA Nonsense_Mutation p.E1025* 0.20 TCGA-55-6968-01 16 22325414 22325414 C G POLR3E Missense_Mutation p.Q163E 0.09 tolerated(0.15) benign(0.05) TCGA-55-6968-01 16 22545845 22545845 C T NPIPB5 Missense_Mutation p.P514L 0.04 tolerated_low_confidence(0.05) probably_damaging(0.981) TCGA-55-6968-01 16 27475738 27475738 T C GTF3C1 Silent p.A1925A 0.34 TCGA-55-6968-01 16 2813700 2813700 G C SRRM2 Silent p.L1057L 0.30 TCGA-55-6968-01 16 2818133 2818133 C T SRRM2 Missense_Mutation p.S2535L 0.32 probably_damaging(0.99) TCGA-55-6968-01 16 28884069 28884069 C G SH2B1 Intron 0.16 TCGA-55-6968-01 16 28898834 28898834 C T ATP2A1 Missense_Mutation p.A240V 0.31 tolerated(0.23) benign(0.012) TCGA-55-6968-01 16 29370656 29370656 G T SNX29P2 Intron 0.21 TCGA-55-6968-01 16 29891314 29891314 G A SEZ6L2 Missense_Mutation p.R482C 0.10 deleterious(0.04) possibly_damaging(0.86) TCGA-55-6968-01 16 48264391 48264391 C T ABCC11 Missense_Mutation p.D65N 0.53 tolerated(0.11) benign(0.013) TCGA-55-6968-01 16 51174945 51174945 G A SALL1 Silent p.A396A 0.39 TCGA-55-6968-01 16 54967457 54967457 G - IRX5 Frame_Shift_Del p.A376Rfs*67 0.35 TCGA-55-6968-01 16 56534840 56534840 G C BBS2 Missense_Mutation p.I441M 0.26 tolerated(0.24) benign(0.054) TCGA-55-6968-01 16 68208309 68208309 G C NFATC3 Missense_Mutation p.E603Q 0.27 deleterious(0.03) benign(0.049) TCGA-55-6968-01 16 68597516 68597516 C G ZFP90 Missense_Mutation p.H276D 0.31 deleterious(0) probably_damaging(1) TCGA-55-6968-01 16 69368948 69368948 C T COG8 Missense_Mutation p.D297N 0.25 deleterious(0) benign(0.299) TCGA-55-6968-01 16 81219244 81219244 C T PKD1L2 5'Flank 0.51 TCGA-55-6968-01 17 10300230 10300230 C G MYH8 Missense_Mutation p.E1418Q 0.35 deleterious(0.01) probably_damaging(0.964) TCGA-55-6968-01 17 10358329 10358329 G A MYH4 Silent p.L788L 0.33 TCGA-55-6968-01 17 10397676 10397676 C T MYH1 Missense_Mutation p.E1888K 0.48 deleterious(0) possibly_damaging(0.816) TCGA-55-6968-01 17 11711208 11711208 C G DNAH9 Missense_Mutation p.F2860L 0.29 benign(0.006) TCGA-55-6968-01 17 12901824 12901824 C G ELAC2 Missense_Mutation p.E475D 0.12 tolerated(0.43) benign(0.005) TCGA-55-6968-01 17 16005121 16005121 T A NCOR1 Intron 0.50 TCGA-55-6968-01 17 16342670 16342670 G A TRPV2 3'Flank 0.09 TCGA-55-6968-01 17 19845206 19845206 C G AKAP10 Missense_Mutation p.D332H 0.16 deleterious(0.01) probably_damaging(1) TCGA-55-6968-01 17 2270677 2270677 C T SGSM2 Silent p.L467L 0.17 TCGA-55-6968-01 17 2323656 2323656 C A METTL16 Missense_Mutation p.G433W 0.60 deleterious_low_confidence(0.01) benign(0.438) TCGA-55-6968-01 17 25974359 25974359 G A LGALS9 Silent p.E274E 0.07 TCGA-55-6968-01 17 26959988 26959988 G C KIAA0100 Missense_Mutation p.I1259M 0.06 deleterious(0.01) benign(0.09) TCGA-55-6968-01 17 29204497 29204497 C T ATAD5 Missense_Mutation p.S1283L 0.21 deleterious(0) possibly_damaging(0.694) TCGA-55-6968-01 17 31098140 31098140 C T MYO1D Intron 0.38 TCGA-55-6968-01 17 3397735 3397735 C T ASPA Silent p.I242I 0.45 TCGA-55-6968-01 17 3526675 3526675 C G SHPK Missense_Mutation p.W202S 0.39 deleterious(0) probably_damaging(1) TCGA-55-6968-01 17 36498905 36498905 G C GPR179 Silent p.L256L 0.25 TCGA-55-6968-01 17 37650802 37650802 G A CDK12 Silent p.V758V 0.25 TCGA-55-6968-01 17 40767058 40767058 G A TUBG1 Silent p.%3D 0.24 TCGA-55-6968-01 17 41886432 41886432 C A MPP3 Silent p.L491L 0.09 TCGA-55-6968-01 17 42883090 42883090 C G GJC1 Silent p.R32R 0.33 TCGA-55-6968-01 17 44249407 44249407 C T KANSL1 Missense_Mutation p.E35K 0.23 deleterious(0) probably_damaging(0.982) TCGA-55-6968-01 17 45896421 45896421 C A OSBPL7 Silent p.S100S 0.23 TCGA-55-6968-01 17 4841351 4841351 C T SLC25A11 Missense_Mutation p.M252I 0.42 tolerated(0.65) benign(0) TCGA-55-6968-01 17 4842372 4842372 C G SLC25A11 Silent p.L77L 0.53 TCGA-55-6968-01 17 54671767 54671767 G A NOG Silent p.L61L 0.09 TCGA-55-6968-01 17 57466815 57466815 C G YPEL2 Missense_Mutation p.L86V 0.29 tolerated(0.32) possibly_damaging(0.714) TCGA-55-6968-01 17 6014170 6014170 G A WSCD1 Silent p.G363G 0.54 TCGA-55-6968-01 17 60814145 60814145 G T MARCH10 Missense_Mutation p.P362T 0.24 tolerated(0.14) possibly_damaging(0.798) TCGA-55-6968-01 17 6441325 6441325 C T PITPNM3 Missense_Mutation p.E34K 0.88 deleterious(0) probably_damaging(0.997) TCGA-55-6968-01 17 72436647 72436647 T C GPRC5C Silent p.F289F 0.29 TCGA-55-6968-01 17 73753064 73753064 G C ITGB4 Missense_Mutation p.E1698D 0.07 deleterious(0) probably_damaging(0.998) TCGA-55-6968-01 17 73839237 73839237 C T UNC13D Intron 0.19 TCGA-55-6968-01 17 74005350 74005350 C A EVPL Silent p.T1312T 0.22 TCGA-55-6968-01 17 74099487 74099487 G A EXOC7 Silent p.F27F 0.31 TCGA-55-6968-01 17 7576910 7576910 G - TP53 Frame_Shift_Del p.S313Afs*32 0.29 TCGA-55-6968-01 17 77808994 77808994 C G CBX4 Missense_Mutation p.K149N 0.06 deleterious(0) probably_damaging(0.987) TCGA-55-6968-01 18 31319171 31319171 G T ASXL3 Missense_Mutation p.Q601H 0.51 probably_damaging(0.998) TCGA-55-6968-01 18 32464694 32464694 C T DTNA Intron 0.04 TCGA-55-6968-01 18 34298119 34298119 C A FHOD3 Missense_Mutation p.S778Y 0.09 tolerated(0.88) possibly_damaging(0.632) TCGA-55-6968-01 18 52265100 52265100 C G DYNAP Silent p.L119L 0.51 TCGA-55-6968-01 18 52586555 52586555 G C CCDC68 Missense_Mutation p.L246V 0.06 deleterious(0) probably_damaging(1) TCGA-55-6968-01 18 5398103 5398103 C T EPB41L3 Missense_Mutation p.E797K 0.03 deleterious(0.04) benign(0.066) TCGA-55-6968-01 18 697318 697318 G C ENOSF1 Silent p.L98L 0.20 TCGA-55-6968-01 19 13056696 13056696 G C RAD23A 5'Flank 0.33 TCGA-55-6968-01 19 1578413 1578413 C T MBD3 Missense_Mutation p.E268K 0.11 deleterious_low_confidence(0.03) benign(0.292) TCGA-55-6968-01 19 1578486 1578486 C T MBD3 Silent p.L243L 0.07 TCGA-55-6968-01 19 15918233 15918233 G A OR10H1 Silent p.I205I 0.42 TCGA-55-6968-01 19 17329197 17329197 G C USE1 Missense_Mutation p.R140T 0.11 deleterious(0.02) benign(0.072) TCGA-55-6968-01 19 18507771 18507771 C G LRRC25 Translation_Start_Site p.M1? 0.42 deleterious(0.02) benign(0.107) TCGA-55-6968-01 19 18967010 18967010 G A UPF1 Silent p.Q575Q 0.31 TCGA-55-6968-01 19 18967079 18967079 G A UPF1 Silent p.L598L 0.29 TCGA-55-6968-01 19 22785485 22785485 C T AC011467.1 5'Flank 0.06 TCGA-55-6968-01 19 30936637 30936637 C G ZNF536 Nonsense_Mutation p.S723* 0.54 TCGA-55-6968-01 19 31767678 31767678 G A TSHZ3 Silent p.S1007S 0.27 TCGA-55-6968-01 19 33486996 33486996 G A RHPN2 Silent p.L452L 0.22 TCGA-55-6968-01 19 37210750 37210750 G T ZNF567 Missense_Mutation p.R344L 0.27 tolerated(0.24) probably_damaging(0.999) TCGA-55-6968-01 19 38709670 38709670 A T DPF1 Silent p.G136G 0.06 TCGA-55-6968-01 19 38849075 38849075 G C CATSPERG Missense_Mutation p.R457P 0.35 tolerated(0.06) possibly_damaging(0.655) TCGA-55-6968-01 19 39207792 39207792 G A ACTN4 Missense_Mutation p.E327K 0.21 tolerated(0.64) benign(0.089) TCGA-55-6968-01 19 40399317 40399317 G A FCGBP Silent p.V2126V 0.10 TCGA-55-6968-01 19 40873616 40873616 G A PLD3 Missense_Mutation p.E87K 0.32 deleterious(0) probably_damaging(0.992) TCGA-55-6968-01 19 41712315 41712315 T A CYP2S1 Missense_Mutation p.S479R 0.35 deleterious(0.04) possibly_damaging(0.46) TCGA-55-6968-01 19 41932627 41932627 G C B3GNT8 Silent p.L19L 0.09 TCGA-55-6968-01 19 42814443 42814443 G C PRR19 Missense_Mutation p.E208Q 0.22 deleterious(0.04) possibly_damaging(0.536) TCGA-55-6968-01 19 44058920 44058920 C T XRCC1 Missense_Mutation p.E98K 0.31 deleterious(0) probably_damaging(0.999) TCGA-55-6968-01 19 44611268 44611268 G C ZNF224 Missense_Mutation p.D319H 0.17 tolerated(0.07) benign(0.208) TCGA-55-6968-01 19 45016948 45016948 C T CEACAM20 RNA 0.30 TCGA-55-6968-01 19 45593461 45593461 G T GEMIN7 Missense_Mutation p.R30L 0.32 tolerated(0.22) possibly_damaging(0.86) TCGA-55-6968-01 19 45593650 45593650 G C GEMIN7 Missense_Mutation p.G93A 0.33 tolerated(0.09) benign(0.443) TCGA-55-6968-01 19 46376224 46376224 G T FOXA3 Missense_Mutation p.D321Y 0.32 deleterious(0) benign(0.007) TCGA-55-6968-01 19 46664041 46664041 G A IGFL2 Missense_Mutation p.D93N 0.09 deleterious(0) benign(0.185) TCGA-55-6968-01 19 48542550 48542550 T A CABP5 Missense_Mutation p.D88V 0.34 deleterious(0) probably_damaging(0.995) TCGA-55-6968-01 19 51322459 51322459 C G KLK1 Missense_Mutation p.E260D 0.09 tolerated(0.54) benign(0) TCGA-55-6968-01 19 51890461 51890461 G T LIM2 Silent p.A79A 0.29 TCGA-55-6968-01 19 51890462 51890462 G T LIM2 Missense_Mutation p.A79D 0.27 tolerated_low_confidence(0.58) benign(0) TCGA-55-6968-01 19 51955647 51955647 C T SIGLEC8 Missense_Mutation p.E496K 0.12 deleterious_low_confidence(0) benign(0.292) TCGA-55-6968-01 19 5207972 5207972 C G PTPRS Missense_Mutation p.K1913N 0.10 deleterious(0) probably_damaging(1) TCGA-55-6968-01 19 53007912 53007912 G T ZNF578 Missense_Mutation p.R23L 0.23 tolerated(0.75) benign(0.34) TCGA-55-6968-01 19 54242616 54242616 C A MIR518A2 RNA 0.32 TCGA-55-6968-01 19 54485395 54485395 G A CACNG8 Silent p.P190P 0.29 TCGA-55-6968-01 19 54783421 54783421 G T LILRB2 Nonsense_Mutation p.S146* 0.30 TCGA-55-6968-01 19 55106781 55106781 G T LILRA1 Missense_Mutation p.R192M 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-55-6968-01 19 57840738 57840738 C G ZNF543 3'UTR 0.17 TCGA-55-6968-01 19 58067680 58067680 C T ZNF550 Missense_Mutation p.E16K 0.30 deleterious(0) probably_damaging(0.99) TCGA-55-6968-01 19 6921849 6921849 T A EMR1 Missense_Mutation p.N582K 0.49 tolerated(0.11) benign(0.139) TCGA-55-6968-01 1 10342384 10342384 G C KIF1B Intron 0.13 TCGA-55-6968-01 1 103444947 103444947 T A COL11A1 Missense_Mutation p.K867N 0.58 unknown(0) TCGA-55-6968-01 1 10425556 10425556 C T KIF1B Silent p.L1488L 0.28 TCGA-55-6968-01 1 109860494 109860494 C G SORT1 Missense_Mutation p.E708Q 0.07 deleterious(0.05) benign(0.13) TCGA-55-6968-01 1 110255794 110255794 G T GSTM5 Missense_Mutation p.D56Y 0.28 deleterious(0) probably_damaging(0.932) TCGA-55-6968-01 1 112524584 112524584 G A KCND3 Silent p.I255I 0.08 TCGA-55-6968-01 1 113652872 113652872 C T LRIG2 Missense_Mutation p.L496F 0.19 deleterious(0.05) benign(0.396) TCGA-55-6968-01 1 115596001 115596001 G A TSPAN2 Missense_Mutation p.T200M 0.17 tolerated(1) benign(0.245) TCGA-55-6968-01 1 120057340 120057340 T A HSD3B1 3'UTR 0.40 TCGA-55-6968-01 1 12567410 12567410 G A VPS13D Intron 0.07 TCGA-55-6968-01 1 143767599 143767599 C G PPIAL4G Missense_Mutation p.D84H 0.13 deleterious_low_confidence(0.03) benign(0.247) TCGA-55-6968-01 1 144952209 144952209 C G PDE4DIP Missense_Mutation p.Q170H 0.06 deleterious(0.04) possibly_damaging(0.789) TCGA-55-6968-01 1 145555774 145555774 C G ANKRD35 Missense_Mutation p.S41C 0.16 deleterious(0.01) possibly_damaging(0.902) TCGA-55-6968-01 1 146634073 146634073 G A PRKAB2 Silent p.P206P 0.49 TCGA-55-6968-01 1 146765361 146765361 G C CHD1L Missense_Mutation p.E821Q 0.15 deleterious(0.04) benign(0.129) TCGA-55-6968-01 1 149943016 149943016 G C OTUD7B Silent p.L83L 0.29 TCGA-55-6968-01 1 150769293 150769293 G A CTSK Silent p.A324A 0.29 TCGA-55-6968-01 1 151020578 151020578 C G C1orf56 Silent p.L85L 0.08 TCGA-55-6968-01 1 151641055 151641055 G A SNX27 Missense_Mutation p.E365K 0.32 tolerated(0.24) benign(0.004) TCGA-55-6968-01 1 152058665 152058665 C G TCHHL1 Missense_Mutation p.R498T 0.23 tolerated(0.07) benign(0.027) TCGA-55-6968-01 1 152382028 152382028 C G CRNN 3'UTR 0.18 TCGA-55-6968-01 1 154192911 154192911 C G C1orf43 5'UTR 0.07 TCGA-55-6968-01 1 154575020 154575020 C G ADAR Missense_Mutation p.G33A 0.24 tolerated_low_confidence(0.06) benign(0.053) TCGA-55-6968-01 1 154918695 154918695 C T PBXIP1 Silent p.R485R 0.06 TCGA-55-6968-01 1 155180369 155180369 G C MTX1 Missense_Mutation p.G210A 0.37 tolerated(0.06) benign(0.081) TCGA-55-6968-01 1 156039538 156039538 G A RAB25 Silent p.L170L 0.27 TCGA-55-6968-01 1 156268776 156268776 C A VHLL Missense_Mutation p.V69L 0.32 tolerated(0.5) benign(0.05) TCGA-55-6968-01 1 156639266 156639266 C G NES Missense_Mutation p.E1572Q 0.11 deleterious(0.04) possibly_damaging(0.548) TCGA-55-6968-01 1 156823985 156823985 C T INSRR Missense_Mutation p.E66K 0.30 deleterious(0.02) possibly_damaging(0.447) TCGA-55-6968-01 1 156913793 156913793 C T ARHGEF11 Missense_Mutation p.D1057N 0.22 deleterious(0) benign(0.076) TCGA-55-6968-01 1 158623212 158623212 A T SPTA1 Missense_Mutation p.W1014R 0.08 deleterious(0) probably_damaging(0.933) TCGA-55-6968-01 1 15900090 15900092 TTC - AGMAT 3'UTR 0.26 TCGA-55-6968-01 1 160313217 160313217 G A NCSTN Missense_Mutation p.D11N 0.23 tolerated_low_confidence(0.24) benign(0.001) TCGA-55-6968-01 1 161180457 161180457 G - NDUFS2 Frame_Shift_Del p.E315Sfs*27 0.21 TCGA-55-6968-01 1 16577171 16577171 C G FBXO42 Missense_Mutation p.K716N 0.27 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-55-6968-01 1 166039555 166039555 G C FAM78B Missense_Mutation p.P237A 0.24 deleterious(0.01) possibly_damaging(0.592) TCGA-55-6968-01 1 166810191 166810191 G A POGK Splice_Site 0.16 TCGA-55-6968-01 1 167868675 167868675 G A ADCY10 Nonsense_Mutation p.Q210* 0.37 TCGA-55-6968-01 1 173010770 173010770 G A TNFSF18 Nonsense_Mutation p.Q113* 0.11 TCGA-55-6968-01 1 173567147 173567147 G C SLC9C2 Missense_Mutation p.L85V 0.11 tolerated(0.06) possibly_damaging(0.823) TCGA-55-6968-01 1 173822626 173822626 G A DARS2 Missense_Mutation p.R495K 0.07 tolerated(0.9) benign(0) TCGA-55-6968-01 1 175299366 175299366 C G TNR Missense_Mutation p.D1213H 0.28 deleterious(0) probably_damaging(1) TCGA-55-6968-01 1 178427288 178427288 G A RASAL2 Missense_Mutation p.R954K 0.41 tolerated(0.23) benign(0.002) TCGA-55-6968-01 1 180905601 180905601 C G KIAA1614 Silent p.L852L 0.14 TCGA-55-6968-01 1 182829269 182829269 G A DHX9 Missense_Mutation p.D428N 0.08 tolerated(0.06) benign(0.013) TCGA-55-6968-01 1 183192287 183192287 C G LAMC2 Missense_Mutation p.Q261E 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-6968-01 1 183546827 183546827 G C NCF2 Missense_Mutation p.I91M 0.26 deleterious(0.03) possibly_damaging(0.82) TCGA-55-6968-01 1 19447887 19447887 C T UBR4 Missense_Mutation p.E3313K 0.18 probably_damaging(0.972) TCGA-55-6968-01 1 196395104 196395104 C T KCNT2 Silent p.V333V 0.34 TCGA-55-6968-01 1 197070086 197070086 C A ASPM Missense_Mutation p.K2765N 0.43 tolerated(0.11) benign(0.004) TCGA-55-6968-01 1 198668726 198668726 C A PTPRC Missense_Mutation p.T111K 0.43 deleterious(0) possibly_damaging(0.866) TCGA-55-6968-01 1 201837898 201837898 G T IPO9 Missense_Mutation p.D660Y 0.39 deleterious(0.01) possibly_damaging(0.695) TCGA-55-6968-01 1 203802916 203802916 C T ZC3H11A Intron 0.08 TCGA-55-6968-01 1 207867947 207867947 G T CR1L Missense_Mutation p.G238V 0.22 deleterious(0) probably_damaging(0.996) TCGA-55-6968-01 1 21014176 21014176 G C KIF17 Missense_Mutation p.S548C 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.625) TCGA-55-6968-01 1 211486135 211486135 G A RCOR3 Silent p.K383K 0.33 TCGA-55-6968-01 1 212180053 212180053 C A INTS7 Missense_Mutation p.K269N 0.37 deleterious(0.01) probably_damaging(0.996) TCGA-55-6968-01 1 215844497 215844497 C A USH2A Missense_Mutation p.Q4650H 0.25 possibly_damaging(0.521) TCGA-55-6968-01 1 215990372 215990372 G C USH2A Missense_Mutation p.I3179M 0.23 benign(0.04) TCGA-55-6968-01 1 216370025 216370025 G T USH2A Missense_Mutation p.S1374Y 0.53 probably_damaging(0.999) TCGA-55-6968-01 1 222717372 222717372 G A HHIPL2 Missense_Mutation p.H161Y 0.06 tolerated(0.44) benign(0.073) TCGA-55-6968-01 1 223568724 223568724 G C C1orf65 3'UTR 0.19 TCGA-55-6968-01 1 227172960 227172960 C G ADCK3 Missense_Mutation p.I526M 0.36 deleterious(0) probably_damaging(0.957) TCGA-55-6968-01 1 22913128 22913128 C T EPHA8 Missense_Mutation p.R327W 0.36 deleterious(0) benign(0.427) TCGA-55-6968-01 1 229772013 229772013 C G URB2 Missense_Mutation p.F551L 0.17 deleterious(0) benign(0.07) TCGA-55-6968-01 1 233397060 233397060 G A PCNXL2 Missense_Mutation p.S163L 0.18 deleterious_low_confidence(0) benign(0.021) TCGA-55-6968-01 1 23380296 23380296 G C KDM1A Missense_Mutation p.E252Q 0.27 deleterious(0.01) possibly_damaging(0.571) TCGA-55-6968-01 1 235878645 235878645 C T LYST Missense_Mutation p.E3214K 0.37 deleterious(0) probably_damaging(0.997) TCGA-55-6968-01 1 237659896 237659896 G A RYR2 Missense_Mutation p.E683K 0.31 benign(0.397) TCGA-55-6968-01 1 2411750 2411750 G T PLCH2 Missense_Mutation p.R188M 0.42 tolerated(0.06) possibly_damaging(0.785) TCGA-55-6968-01 1 243736282 243736282 A G AKT3 Silent p.I255I 0.25 TCGA-55-6968-01 1 24416558 24416558 C G MYOM3 Missense_Mutation p.E495Q 0.38 tolerated(0.05) benign(0.266) TCGA-55-6968-01 1 246021857 246021857 G C SMYD3 Missense_Mutation p.I339M 0.24 deleterious(0) benign(0.318) TCGA-55-6968-01 1 247464447 247464447 C T ZNF496 Missense_Mutation p.E380K 0.51 tolerated(0.34) benign(0.116) TCGA-55-6968-01 1 247695329 247695329 G C OR2C3 Missense_Mutation p.T162R 0.20 deleterious(0.01) probably_damaging(0.986) TCGA-55-6968-01 1 248004451 248004451 G T OR11L1 Missense_Mutation p.L250I 0.31 tolerated(1) benign(0) TCGA-55-6968-01 1 248262905 248262905 C A OR2L13 Silent p.T76T 0.22 TCGA-55-6968-01 1 248436956 248436956 T A OR2T33 Missense_Mutation p.H54L 0.54 deleterious(0) possibly_damaging(0.77) TCGA-55-6968-01 1 27278790 27278790 C G C1orf172 Missense_Mutation p.E28Q 0.28 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-55-6968-01 1 28477108 28477108 C A PTAFR Missense_Mutation p.W142L 0.28 deleterious(0) probably_damaging(1) TCGA-55-6968-01 1 32566178 32566178 C T TMEM39B Intron 0.34 TCGA-55-6968-01 1 34052734 34052734 G A CSMD2 Silent p.I2299I 0.37 TCGA-55-6968-01 1 40434140 40434140 T - MFSD2A Frame_Shift_Del p.L461Pfs*23 0.28 TCGA-55-6968-01 1 40704946 40704946 G C RLF Missense_Mutation p.K1524N 0.10 deleterious(0.01) possibly_damaging(0.811) TCGA-55-6968-01 1 43906134 43906134 G A SZT2 Silent p.R2350R 0.07 TCGA-55-6968-01 1 46871923 46871923 C G FAAH Silent p.L278L 0.06 TCGA-55-6968-01 1 52552474 52552474 C T BTF3L4 3'UTR 0.36 TCGA-55-6968-01 1 54644997 54644997 C A CYB5RL Missense_Mutation p.G190V 0.29 deleterious(0) probably_damaging(1) TCGA-55-6968-01 1 55075166 55075166 C A FAM151A Missense_Mutation p.Q511H 0.33 deleterious(0) probably_damaging(0.999) TCGA-55-6968-01 1 57431597 57431597 A T C8B Missense_Mutation p.W9R 0.10 tolerated_low_confidence(0.12) benign(0.004) TCGA-55-6968-01 1 6522112 6522112 C A TNFRSF25 Missense_Mutation p.Q298H 0.34 tolerated(0.08) benign(0.077) TCGA-55-6968-01 1 6610604 6610604 G A NOL9 Silent p.I156I 0.36 TCGA-55-6968-01 1 67155976 67155976 G T SGIP1 Missense_Mutation p.S516I 0.41 deleterious(0) probably_damaging(0.944) TCGA-55-6968-01 1 67263677 67263677 T A INSL5 3'UTR 0.38 TCGA-55-6968-01 1 67518517 67518517 G C SLC35D1 Silent p.L87L 0.27 TCGA-55-6968-01 1 70877131 70877131 C T CTH Silent p.F11F 0.14 TCGA-55-6968-01 1 74506913 74506913 C A LRRIQ3 Nonsense_Mutation p.E568* 0.35 TCGA-55-6968-01 1 74819771 74819771 G A FPGT-TNNI3K Missense_Mutation p.E493K 0.22 tolerated(0.19) possibly_damaging(0.641) TCGA-55-6968-01 1 74819799 74819799 G C FPGT-TNNI3K Missense_Mutation p.W502S 0.23 deleterious(0) probably_damaging(0.998) TCGA-55-6968-01 1 75702721 75702721 C A SLC44A5 Nonsense_Mutation p.G231* 0.21 TCGA-55-6968-01 1 78326962 78326962 G C FAM73A Missense_Mutation p.Q443H 0.08 tolerated(0.2) benign(0.01) TCGA-55-6968-01 1 85656030 85656030 G C SYDE2 Nonsense_Mutation p.S384* 0.17 TCGA-55-6968-01 1 89615129 89615129 T A GBP7 Missense_Mutation p.H333L 0.23 deleterious(0.01) benign(0.363) TCGA-55-6968-01 1 89630425 89630425 C T GBP7 Missense_Mutation p.D103N 0.21 deleterious(0.04) benign(0.37) TCGA-55-6968-01 1 91406762 91406762 G C ZNF644 Nonsense_Mutation p.S50* 0.23 TCGA-55-6968-01 1 9416268 9416268 G A SPSB1 Missense_Mutation p.M106I 0.09 tolerated(0.19) benign(0) TCGA-55-6968-01 1 9658529 9658529 A T TMEM201 Missense_Mutation p.E151V 0.32 deleterious(0) probably_damaging(1) TCGA-55-6968-01 1 99470094 99470094 C A LPPR5 Missense_Mutation p.C45F 0.24 deleterious(0) probably_damaging(0.996) TCGA-55-6968-01 20 18123413 18123413 C T CSRP2BP Missense_Mutation p.L37F 0.31 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-55-6968-01 20 19955755 19955755 G A RIN2 Silent p.K411K 0.12 TCGA-55-6968-01 20 2641147 2641147 C T IDH3B Silent p.K207K 0.09 TCGA-55-6968-01 20 2641351 2641351 C A IDH3B Nonsense_Mutation p.E175* 0.13 TCGA-55-6968-01 20 31893843 31893843 C G BPIFB1 Missense_Mutation p.I430M 0.04 deleterious(0.01) benign(0.155) TCGA-55-6968-01 20 33934975 33934975 C T UQCC1 Missense_Mutation p.V189I 0.25 tolerated(0.45) benign(0.002) TCGA-55-6968-01 20 36759569 36759569 G A TGM2 Silent p.L613L 0.35 TCGA-55-6968-01 20 36999438 36999438 G T LBP Silent p.L402L 0.08 TCGA-55-6968-01 20 37187063 37187063 C G RALGAPB Missense_Mutation p.F1166L 0.07 deleterious(0) benign(0.297) TCGA-55-6968-01 20 4162601 4162601 C T SMOX Missense_Mutation p.A196V 0.31 deleterious(0) possibly_damaging(0.688) TCGA-55-6968-01 20 44037105 44037105 G A DBNDD2 Missense_Mutation p.D102N 0.22 deleterious_low_confidence(0) probably_damaging(0.925) TCGA-55-6968-01 20 47269965 47269965 C G PREX1 Missense_Mutation p.M760I 0.06 tolerated(0.43) benign(0.001) TCGA-55-6968-01 20 47869364 47869364 G C ZNFX1 Missense_Mutation p.R1037G 0.18 deleterious(0) possibly_damaging(0.81) TCGA-55-6968-01 20 47895497 47895497 C T ZNFX1 5'Flank 0.30 TCGA-55-6968-01 20 49626389 49626389 C T KCNG1 Missense_Mutation p.G163S 0.31 tolerated(0.51) benign(0.443) TCGA-55-6968-01 20 50406731 50406731 G T SALL4 Missense_Mutation p.S764Y 0.27 deleterious(0.01) possibly_damaging(0.732) TCGA-55-6968-01 20 53266966 53266966 C T DOK5 Missense_Mutation p.P290L 0.32 tolerated_low_confidence(0.05) benign(0.003) TCGA-55-6968-01 20 57769668 57769668 G C ZNF831 Missense_Mutation p.Q1198H 0.06 deleterious(0) probably_damaging(0.996) TCGA-55-6968-01 21 11038925 11038925 G T BAGE2 RNA 0.10 TCGA-55-6968-01 21 30959742 30959742 C T GRIK1 Nonsense_Mutation p.W579* 0.20 TCGA-55-6968-01 21 34861049 34861049 C G DNAJC28 Missense_Mutation p.D218H 0.08 deleterious(0.01) probably_damaging(0.994) TCGA-55-6968-01 21 38525505 38525505 C T TTC3 Silent p.L890L 0.21 TCGA-55-6968-01 21 38884273 38884273 C T DYRK1A Silent p.V577V 0.27 TCGA-55-6968-01 21 38884310 38884310 C A DYRK1A Missense_Mutation p.H590N 0.28 deleterious_low_confidence(0.04) benign(0.258) TCGA-55-6968-01 21 40568276 40568276 C G BRWD1 Intron 0.10 TCGA-55-6968-01 21 41725461 41725461 C A DSCAM Missense_Mutation p.G289C 0.40 deleterious(0) probably_damaging(1) TCGA-55-6968-01 21 46923960 46923960 G A COL18A1 Missense_Mutation p.E1087K 0.34 probably_damaging(0.996) TCGA-55-6968-01 22 18273598 18273598 A G MICAL3 Missense_Mutation p.L1970P 0.22 probably_damaging(1) TCGA-55-6968-01 22 25747644 25747644 C T LRP5L 3'UTR 0.27 TCGA-55-6968-01 22 30660259 30660259 C T OSM Silent p.E124E 0.11 TCGA-55-6968-01 22 39378408 39378408 G C APOBEC3B 5'Flank 0.26 TCGA-55-6968-01 22 50704874 50704874 G A MAPK11 Intron 0.25 TCGA-55-6968-01 2 102507751 102507751 C G MAP4K4 3'UTR 0.11 TCGA-55-6968-01 2 105859024 105859024 G C GPR45 Missense_Mutation p.D237H 0.17 tolerated(0.15) benign(0.014) TCGA-55-6968-01 2 10933284 10933284 G A PDIA6 Silent p.L131L 0.31 TCGA-55-6968-01 2 120885288 120885288 G A EPB41L5 Silent p.L454L 0.16 TCGA-55-6968-01 2 120885298 120885298 G C EPB41L5 Missense_Mutation p.D458H 0.12 tolerated(0.07) possibly_damaging(0.728) TCGA-55-6968-01 2 125261973 125261973 G C CNTNAP5 Silent p.G388G 0.18 TCGA-55-6968-01 2 130953816 130953816 G A TUBA3E Silent p.G44G 0.31 TCGA-55-6968-01 2 131128305 131128305 G C PTPN18 Missense_Mutation p.D262H 0.09 deleterious(0.03) benign(0.025) TCGA-55-6968-01 2 139316703 139316703 A T SPOPL Nonsense_Mutation p.R198* 0.31 TCGA-55-6968-01 2 141079566 141079567 CA T LRP1B Frame_Shift_Del p.L4202* 0.20 TCGA-55-6968-01 2 141598506 141598506 C A LRP1B Missense_Mutation p.A1699S 0.21 benign(0.003) TCGA-55-6968-01 2 141751689 141751689 G T LRP1B Missense_Mutation p.A840E 0.31 benign(0.005) TCGA-55-6968-01 2 144764846 144764846 C A GTDC1 Missense_Mutation p.G260C 0.21 tolerated_low_confidence(0.05) possibly_damaging(0.664) TCGA-55-6968-01 2 160983017 160983017 C T ITGB6 Missense_Mutation p.E586K 0.34 tolerated(0.39) benign(0.008) TCGA-55-6968-01 2 165949010 165949010 C G SCN3A Missense_Mutation p.D1521H 0.33 deleterious(0) probably_damaging(1) TCGA-55-6968-01 2 167138221 167138221 C A SCN9A Missense_Mutation p.S680I 0.45 deleterious(0) probably_damaging(0.994) TCGA-55-6968-01 2 167138222 167138222 T C SCN9A Missense_Mutation p.S680G 0.44 deleterious(0.01) benign(0.393) TCGA-55-6968-01 2 168114856 168114856 G - XIRP2 3'UTR 0.19 TCGA-55-6968-01 2 179398448 179398448 G A TTN Silent p.I34298I 0.20 TCGA-55-6968-01 2 179457184 179457184 C T TTN Missense_Mutation p.E19850K 0.10 TCGA-55-6968-01 2 179466751 179466751 C T TTN Missense_Mutation p.G18416E 0.29 TCGA-55-6968-01 2 179616070 179616070 C T TTN Intron 0.12 TCGA-55-6968-01 2 182403895 182403895 C T CERKL Missense_Mutation p.E514K 0.10 tolerated(0.54) benign(0.15) TCGA-55-6968-01 2 1843127 1843127 C A MYT1L Silent p.G956G 0.17 TCGA-55-6968-01 2 187627389 187627389 C A FAM171B Missense_Mutation p.H774N 0.25 tolerated(0.35) benign(0.245) TCGA-55-6968-01 2 188228199 188228199 G T CALCRL Missense_Mutation p.H177Q 0.27 deleterious(0) probably_damaging(0.998) TCGA-55-6968-01 2 189873714 189873714 G T COL3A1 Missense_Mutation p.C1197F 0.32 benign(0.035) TCGA-55-6968-01 2 189914104 189914104 G C COL5A2 Missense_Mutation p.S1039C 0.09 unknown(0) TCGA-55-6968-01 2 198950310 198950310 G C PLCL1 Missense_Mutation p.G690A 0.05 tolerated(0.3) benign(0.247) TCGA-55-6968-01 2 201527669 201527669 G C AOX1 Missense_Mutation p.D1174H 0.19 deleterious(0) probably_damaging(0.989) TCGA-55-6968-01 2 202625644 202625644 C G ALS2 Missense_Mutation p.R358T 0.09 tolerated(0.74) benign(0) TCGA-55-6968-01 2 207027212 207027212 G A EEF1B2 Splice_Site p.X133_splice 0.10 TCGA-55-6968-01 2 207170219 207170219 G A ZDBF2 Missense_Mutation p.E323K 0.19 deleterious(0.03) benign(0.292) TCGA-55-6968-01 2 207424751 207424751 G C ADAM23 Missense_Mutation p.D360H 0.30 tolerated(0.13) benign(0.025) TCGA-55-6968-01 2 210940329 210940329 A G KANSL1L Missense_Mutation p.F568L 0.28 tolerated(0.08) probably_damaging(0.978) TCGA-55-6968-01 2 216237099 216237099 C G FN1 Splice_Site p.X2083_splice 0.08 TCGA-55-6968-01 2 220034069 220034069 C A SLC23A3 Missense_Mutation p.S127I 0.29 deleterious(0) probably_damaging(0.962) TCGA-55-6968-01 2 225698911 225698911 G T DOCK10 Missense_Mutation p.L974I 0.26 tolerated(1) benign(0.027) TCGA-55-6968-01 2 228883781 228883781 C T SPHKAP Missense_Mutation p.E597K 0.11 deleterious(0.01) benign(0.098) TCGA-55-6968-01 2 230253101 230253101 C T DNER Missense_Mutation p.D579N 0.35 deleterious(0) benign(0.126) TCGA-55-6968-01 2 242573096 242573096 T G THAP4 Missense_Mutation p.Q159P 0.38 tolerated_low_confidence(0.32) benign(0) TCGA-55-6968-01 2 25472574 25472574 C T DNMT3A Intron 0.28 TCGA-55-6968-01 2 27522159 27522159 G A TRIM54 Missense_Mutation p.E130K 0.36 deleterious(0) benign(0.138) TCGA-55-6968-01 2 27601829 27601829 C G ZNF513 Missense_Mutation p.E102Q 0.35 tolerated(0.34) benign(0) TCGA-55-6968-01 2 31602800 31602800 C G XDH Missense_Mutation p.G392A 0.22 deleterious(0.05) benign(0.434) TCGA-55-6968-01 2 3341790 3341790 C T TSSC1 Missense_Mutation p.R86K 0.05 tolerated(1) benign(0) TCGA-55-6968-01 2 33590506 33590506 G T LTBP1 Missense_Mutation p.E1549D 0.28 deleterious(0.01) probably_damaging(0.968) TCGA-55-6968-01 2 3391925 3391925 G A TRAPPC12 Silent p.P177P 0.21 TCGA-55-6968-01 2 36739428 36739428 C T CRIM1 Silent p.H557H 0.06 TCGA-55-6968-01 2 43459968 43459968 C A THADA Missense_Mutation p.V1784F 0.28 deleterious(0.02) benign(0.103) TCGA-55-6968-01 2 55844398 55844398 C T SMEK2 Silent p.V8V 0.29 TCGA-55-6968-01 2 62449939 62449939 C T B3GNT2 Missense_Mutation p.S195L 0.35 tolerated(0.13) possibly_damaging(0.904) TCGA-55-6968-01 2 62934240 62934240 G T EHBP1 5'UTR 0.20 TCGA-55-6968-01 2 62934241 62934241 C G EHBP1 5'UTR 0.21 TCGA-55-6968-01 2 70408710 70408710 G C C2orf42 Missense_Mutation p.I136M 0.07 tolerated(0.1) possibly_damaging(0.487) TCGA-55-6968-01 2 71591192 71591192 A T ZNF638 Silent p.R509R 0.23 TCGA-55-6968-01 2 74762799 74762799 G A LOXL3 Silent p.L444L 0.25 TCGA-55-6968-01 2 74782358 74782358 G T DOK1 Missense_Mutation p.K46N 0.32 deleterious(0.02) probably_damaging(0.925) TCGA-55-6968-01 2 79312683 79312683 G T REG1B Missense_Mutation p.S123Y 0.24 deleterious(0.01) probably_damaging(0.969) TCGA-55-6968-01 2 80620402 80620402 G T CTNNA2 Missense_Mutation p.D375Y 0.32 deleterious(0) probably_damaging(0.919) TCGA-55-6968-01 2 80874709 80874709 G T CTNNA2 Splice_Site p.X811_splice 0.31 TCGA-55-6968-01 2 85890488 85890488 G T SFTPB Missense_Mutation p.S340Y 0.33 tolerated(0.61) benign(0.374) TCGA-55-6968-01 2 88424070 88424070 C T FABP1 Silent p.V92V 0.36 TCGA-55-6968-01 2 89399595 89399595 A G IGKV1-16 Silent p.S36S 0.25 TCGA-55-6968-01 2 99787814 99787814 G C MITD1 Missense_Mutation p.L157V 0.05 tolerated(0.53) benign(0.001) TCGA-55-6968-01 3 101232027 101232027 C A SENP7 5'UTR 0.33 TCGA-55-6968-01 3 10320072 10320072 C T TATDN2 Missense_Mutation p.R691W 0.14 deleterious(0.01) possibly_damaging(0.552) TCGA-55-6968-01 3 111312626 111312626 C G ZBED2 Missense_Mutation p.R141S 0.21 deleterious(0.03) benign(0.003) TCGA-55-6968-01 3 126217004 126217004 G T UROC1 Missense_Mutation p.S503Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-55-6968-01 3 126272262 126272262 T A C3orf22 5'UTR 0.31 TCGA-55-6968-01 3 129247828 129247828 C G RHO Silent p.L84L 0.10 TCGA-55-6968-01 3 138762887 138762887 G T PRR23C Silent p.G192G 0.16 TCGA-55-6968-01 3 140785640 140785640 C T SPSB4 Missense_Mutation p.P232S 0.31 tolerated(0.08) benign(0.028) TCGA-55-6968-01 3 141299244 141299244 C G RASA2 Nonsense_Mutation p.S542* 0.05 TCGA-55-6968-01 3 15126289 15126289 G C ZFYVE20 Missense_Mutation p.S184C 0.11 deleterious(0) probably_damaging(0.998) TCGA-55-6968-01 3 156175293 156175293 G C KCNAB1 Missense_Mutation p.D137H 0.04 deleterious(0.02) probably_damaging(0.996) TCGA-55-6968-01 3 182738013 182738013 C G MCCC1 Missense_Mutation p.E628Q 0.19 tolerated(1) benign(0.004) TCGA-55-6968-01 3 182948790 182948790 G C MCF2L2 Missense_Mutation p.D626E 0.10 tolerated(1) benign(0.032) TCGA-55-6968-01 3 192126024 192126024 G C FGF12 5'UTR 0.31 TCGA-55-6968-01 3 195474200 195474200 C T MUC4 Silent p.L5362L 0.10 TCGA-55-6968-01 3 196748344 196748344 T C MFI2 Splice_Site p.X215_splice 0.16 TCGA-55-6968-01 3 197640768 197640768 A G IQCG Missense_Mutation p.L291S 0.26 deleterious(0) probably_damaging(0.988) TCGA-55-6968-01 3 27758862 27758862 G C EOMES Missense_Mutation p.A587G 0.45 tolerated(0.21) benign(0.034) TCGA-55-6968-01 3 35785414 35785414 C T ARPP21 Silent p.N664N 0.40 TCGA-55-6968-01 3 36779587 36779587 C A DCLK3 Missense_Mutation p.E188D 0.10 deleterious(0) possibly_damaging(0.65) TCGA-55-6968-01 3 39179033 39179033 G C TTC21A Missense_Mutation p.Q1176H 0.07 deleterious(0.03) benign(0.039) TCGA-55-6968-01 3 39452676 39452676 G C RPSA Intron 0.22 TCGA-55-6968-01 3 42678788 42678788 G C NKTR Missense_Mutation p.G531A 0.34 tolerated_low_confidence(0.12) unknown(0) TCGA-55-6968-01 3 47316836 47316836 G T KIF9 Missense_Mutation p.Q80K 0.28 tolerated(0.44) benign(0.014) TCGA-55-6968-01 3 49027813 49027813 G A P4HTM Missense_Mutation p.E42K 0.45 tolerated_low_confidence(0.05) benign(0.182) TCGA-55-6968-01 3 52725623 52725623 G C GNL3 Missense_Mutation p.G283R 0.08 deleterious(0) probably_damaging(0.994) TCGA-55-6968-01 3 67054667 67054667 G C KBTBD8 Missense_Mutation p.A426P 0.39 tolerated(1) benign(0.003) TCGA-55-6968-01 3 69124581 69124581 C T UBA3 Silent p.L88L 0.23 TCGA-55-6968-01 3 74350885 74350885 C T CNTN3 Missense_Mutation p.E620K 0.24 deleterious(0.04) possibly_damaging(0.458) TCGA-55-6968-01 3 77666845 77666845 G A ROBO2 Missense_Mutation p.E1175K 0.06 deleterious(0.01) benign(0.292) TCGA-55-6968-01 3 97851572 97851572 G A OR5H1 Missense_Mutation p.E11K 0.37 deleterious(0.04) benign(0.049) TCGA-55-6968-01 4 110612133 110612133 G A CASP6 Silent p.V172V 0.13 TCGA-55-6968-01 4 115792032 115792032 G C NDST4 Silent p.V537V 0.14 TCGA-55-6968-01 4 120190864 120190864 A T USP53 Missense_Mutation p.D436V 0.52 deleterious(0) possibly_damaging(0.779) TCGA-55-6968-01 4 126389741 126389741 G A FAT4 Missense_Mutation p.D3992N 0.38 benign(0.002) TCGA-55-6968-01 4 129035746 129035746 G A LARP1B Missense_Mutation p.R337K 0.21 tolerated(0.09) possibly_damaging(0.515) TCGA-55-6968-01 4 15937873 15937873 C T FGFBP1 Missense_Mutation p.R128K 0.09 tolerated(0.56) benign(0.003) TCGA-55-6968-01 4 3235054 3235054 C G HTT Silent p.L2810L 0.34 TCGA-55-6968-01 4 36179551 36179551 A G ARAP2 Silent p.V585V 0.39 TCGA-55-6968-01 4 39448876 39448876 G C KLB Missense_Mutation p.D844H 0.13 tolerated(0.21) probably_damaging(0.998) TCGA-55-6968-01 4 70155453 70155453 C A UGT2B28 Missense_Mutation p.P358H 0.29 deleterious(0) probably_damaging(0.999) TCGA-55-6968-01 4 72313445 72313445 G A SLC4A4 Missense_Mutation p.D350N 0.18 deleterious(0) probably_damaging(0.996) TCGA-55-6968-01 4 77652041 77652041 A G SHROOM3 Missense_Mutation p.I180M 0.04 deleterious(0) possibly_damaging(0.879) TCGA-55-6968-01 4 8608532 8608532 C T CPZ Silent p.F325F 0.57 TCGA-55-6968-01 4 88535003 88535003 G T DSPP Nonsense_Mutation p.E397* 0.39 TCGA-55-6968-01 5 131307302 131307302 C T ACSL6 Missense_Mutation p.G459R 0.39 deleterious(0.01) benign(0.238) TCGA-55-6968-01 5 135188369 135188369 G A SLC25A48 Missense_Mutation p.E94K 0.06 tolerated(0.06) benign(0.034) TCGA-55-6968-01 5 137802793 137802793 G A EGR1 Missense_Mutation p.E219K 0.30 deleterious(0.01) possibly_damaging(0.621) TCGA-55-6968-01 5 139216519 139216519 C G PSD2 Silent p.L509L 0.31 TCGA-55-6968-01 5 140222075 140222075 T A PCDHA8 Missense_Mutation p.M390K 0.05 tolerated_low_confidence(0.06) benign(0) TCGA-55-6968-01 5 140531298 140531298 C G PCDHB6 Missense_Mutation p.S487W 0.32 deleterious_low_confidence(0) possibly_damaging(0.701) TCGA-55-6968-01 5 140755297 140755297 C A PCDHGA6 Missense_Mutation p.S549R 0.45 tolerated_low_confidence(0.06) benign(0.033) TCGA-55-6968-01 5 140755298 140755298 C A PCDHGA6 Missense_Mutation p.L550M 0.45 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-55-6968-01 5 140764296 140764296 G T PCDHGA7 Missense_Mutation p.K610N 0.45 deleterious_low_confidence(0) possibly_damaging(0.718) TCGA-55-6968-01 5 145616956 145616956 C T RBM27 Missense_Mutation p.P414S 0.10 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-55-6968-01 5 148712357 148712357 C T AFAP1L1 Missense_Mutation p.A692V 0.19 deleterious(0) benign(0.119) TCGA-55-6968-01 5 150885569 150885569 G C FAT2 Missense_Mutation p.L4203V 0.05 benign(0.002) TCGA-55-6968-01 5 154210376 154210376 G A FAXDC2 Silent p.V117V 0.29 TCGA-55-6968-01 5 156918894 156918894 G T ADAM19 Missense_Mutation p.N645K 0.41 deleterious(0) probably_damaging(0.994) TCGA-55-6968-01 5 176637325 176637325 C T NSD1 Missense_Mutation p.S642F 0.32 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-55-6968-01 5 21755775 21755775 C A CDH12 Nonsense_Mutation p.E604* 0.45 TCGA-55-6968-01 5 236548 236548 G C SDHA Silent p.L422L 0.16 TCGA-55-6968-01 5 36064368 36064368 C G UGT3A2 Missense_Mutation p.R60T 0.07 tolerated(0.36) benign(0.055) TCGA-55-6968-01 5 37000610 37000610 G A NIPBL Missense_Mutation p.R1147Q 0.21 tolerated(0.07) benign(0.301) TCGA-55-6968-01 5 40972598 40972598 G C C7 Missense_Mutation p.C659S 0.19 deleterious(0) probably_damaging(0.999) TCGA-55-6968-01 5 6599925 6599925 G C NSUN2 3'UTR 0.27 TCGA-55-6968-01 5 70793168 70793168 C G BDP1 Nonsense_Mutation p.S624* 0.35 TCGA-55-6968-01 5 72469217 72469217 G C TMEM174 Silent p.L49L 0.09 TCGA-55-6968-01 5 89979506 89979506 A T GPR98 Missense_Mutation p.E1923V 0.55 benign(0.362) TCGA-55-6968-01 6 116758475 116758475 G C DSE Missense_Mutation p.W948C 0.10 tolerated_low_confidence(0.53) benign(0.006) TCGA-55-6968-01 6 129807727 129807727 G A LAMA2 Missense_Mutation p.D2620N 0.17 deleterious(0.01) benign(0.434) TCGA-55-6968-01 6 130392185 130392185 C T L3MBTL3 Missense_Mutation p.S386L 0.18 deleterious(0) benign(0.042) TCGA-55-6968-01 6 138657467 138657467 G C KIAA1244 Missense_Mutation p.Q2126H 0.44 tolerated(0.08) possibly_damaging(0.473) TCGA-55-6968-01 6 145161935 145161935 G C UTRN Missense_Mutation p.E3413Q 0.07 deleterious(0) probably_damaging(0.998) TCGA-55-6968-01 6 152129107 152129107 G C ESR1 Silent p.G20G 0.33 TCGA-55-6968-01 6 15663154 15663154 C G DTNBP1 5'UTR 0.12 TCGA-55-6968-01 6 2116082 2116082 T A GMDS Missense_Mutation p.S90C 0.39 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-55-6968-01 6 27114530 27114530 C T HIST1H2BK Silent p.K16K 0.08 TCGA-55-6968-01 6 27925253 27925253 C A OR2B6 Missense_Mutation p.P79T 0.34 deleterious(0) probably_damaging(1) TCGA-55-6968-01 6 28251740 28251740 C T PGBD1 Silent p.F50F 0.07 TCGA-55-6968-01 6 29012677 29012677 G A OR2W1 Silent p.I92I 0.16 TCGA-55-6968-01 6 29343053 29343053 G A OR12D3 Silent p.V4V 0.38 TCGA-55-6968-01 6 29693318 29693318 G C HLA-F Silent p.V327V 0.04 TCGA-55-6968-01 6 30460210 30460210 G C HLA-E Missense_Mutation p.E345Q 0.10 deleterious_low_confidence(0) benign(0.031) TCGA-55-6968-01 6 30698274 30698274 C G FLOT1 Missense_Mutation p.K340N 0.04 tolerated(0.09) probably_damaging(0.917) TCGA-55-6968-01 6 30859842 30859842 G T DDR1 Missense_Mutation p.K243N 0.09 tolerated(0.17) benign(0.088) TCGA-55-6968-01 6 31737524 31737524 G A VWA7 Silent p.F415F 0.35 TCGA-55-6968-01 6 31896670 31896670 G A CFB Intron 0.23 TCGA-55-6968-01 6 32605232 32605232 G C HLA-DQA1 5'UTR 0.22 TCGA-55-6968-01 6 34803225 34803225 C G UHRF1BP1 Missense_Mutation p.A275G 0.49 deleterious(0.01) benign(0.4) TCGA-55-6968-01 6 348817 348817 G C DUSP22 Missense_Mutation p.A162P 0.14 tolerated(0.15) benign(0.303) TCGA-55-6968-01 6 3850892 3850892 G C FAM50B Missense_Mutation p.E283Q 0.19 deleterious(0) probably_damaging(0.998) TCGA-55-6968-01 6 41903779 41903779 G C CCND3 Missense_Mutation p.Q260E 0.44 deleterious(0.02) benign(0.011) TCGA-55-6968-01 6 49808660 49808660 G T CRISP1 Missense_Mutation p.R162S 0.31 tolerated(0.64) benign(0.142) TCGA-55-6968-01 6 52052561 52052561 C A IL17A Missense_Mutation p.S63Y 0.50 tolerated(0.5) benign(0.029) TCGA-55-6968-01 6 53989477 53989477 A T MLIP Silent p.A142A 0.09 TCGA-55-6968-01 6 57512674 57512674 T C PRIM2 3'UTR 0.16 TCGA-55-6968-01 6 70034871 70034871 T A BAI3 Silent p.I974I 0.53 TCGA-55-6968-01 6 75834045 75834045 C A COL12A1 Missense_Mutation p.W2217L 0.58 probably_damaging(0.998) TCGA-55-6968-01 6 75834885 75834885 C A COL12A1 Missense_Mutation p.D2189Y 0.46 probably_damaging(1) TCGA-55-6968-01 6 7590458 7590458 C T SNRNP48 5'UTR 0.44 TCGA-55-6968-01 6 85457693 85457693 G C TBX18 Missense_Mutation p.A295G 0.32 deleterious(0) probably_damaging(0.944) TCGA-55-6968-01 6 94120643 94120643 C T EPHA7 Silent p.R136R 0.10 TCGA-55-6968-01 7 100087047 100087049 AGG TT NYAP1 Frame_Shift_Del p.K568Ifs*6 0.26 TCGA-55-6968-01 7 100373101 100373101 G C ZAN Missense_Mutation p.E1976D 0.14 unknown(0) TCGA-55-6968-01 7 100859822 100859822 C G PLOD3 Silent p.L69L 0.24 TCGA-55-6968-01 7 105177117 105177117 G C RINT1 Missense_Mutation p.G65A 0.32 tolerated(0.07) probably_damaging(0.982) TCGA-55-6968-01 7 105902110 105902110 G C NAMPT Nonsense_Mutation p.S338* 0.26 TCGA-55-6968-01 7 106826860 106826860 G A HBP1 Missense_Mutation p.D199N 0.28 deleterious(0) possibly_damaging(0.555) TCGA-55-6968-01 7 107664426 107664426 G T LAMB4 3'UTR 0.18 TCGA-55-6968-01 7 11022100 11022100 G A PHF14 Missense_Mutation p.E72K 0.18 tolerated_low_confidence(0.49) unknown(0) TCGA-55-6968-01 7 112413045 112413045 C A TMEM168 Missense_Mutation p.G446V 0.39 deleterious(0.05) possibly_damaging(0.872) TCGA-55-6968-01 7 127894615 127894615 G A LEP Silent p.L101L 0.33 TCGA-55-6968-01 7 128040393 128040393 G A IMPDH1 Silent p.L260L 0.18 TCGA-55-6968-01 7 128804319 128804319 G A TSPAN33 Missense_Mutation p.R123Q 0.19 tolerated(0.16) benign(0.19) TCGA-55-6968-01 7 134252980 134252980 C A AKR1B15 Missense_Mutation p.A74D 0.37 deleterious(0) probably_damaging(0.985) TCGA-55-6968-01 7 138432218 138432218 C T ATP6V0A4 Nonsense_Mutation p.W424* 0.29 TCGA-55-6968-01 7 140273659 140273659 G C DENND2A Missense_Mutation p.F465L 0.06 tolerated(1) benign(0.005) TCGA-55-6968-01 7 140453193 140453193 T C BRAF Missense_Mutation p.N581S 0.31 deleterious(0.04) benign(0.082) TCGA-55-6968-01 7 142571849 142571849 A G TRPV6 Missense_Mutation p.V500A 0.23 deleterious(0.02) probably_damaging(0.988) TCGA-55-6968-01 7 142625255 142625255 G T TRPV5 Missense_Mutation p.D279E 0.33 deleterious(0.02) probably_damaging(0.972) TCGA-55-6968-01 7 143573180 143573180 G A FAM115A Silent p.L174L 0.38 TCGA-55-6968-01 7 144015529 144015529 G C OR2A1 Missense_Mutation p.L104F 0.15 deleterious(0.03) benign(0.053) TCGA-55-6968-01 7 146536801 146536801 A T CNTNAP2 Splice_Site p.X70_splice 0.37 TCGA-55-6968-01 7 20199323 20199323 G C MACC1 Missense_Mutation p.Q221E 0.06 tolerated(0.59) benign(0.008) TCGA-55-6968-01 7 23509641 23509641 G C IGF2BP3 Missense_Mutation p.S30W 0.04 deleterious(0) possibly_damaging(0.906) TCGA-55-6968-01 7 29994843 29994843 C G SCRN1 Missense_Mutation p.R118T 0.07 deleterious(0) possibly_damaging(0.688) TCGA-55-6968-01 7 55259538 55259538 G A EGFR Missense_Mutation p.E866K 0.07 deleterious(0) probably_damaging(0.982) TCGA-55-6968-01 7 74211925 74211925 G A GTF2IRD2 Silent p.F642F 0.16 TCGA-55-6968-01 7 76916169 76916169 G A CCDC146 Missense_Mutation p.D735N 0.18 tolerated(0.44) benign(0.003) TCGA-55-6968-01 7 83590683 83590683 C A SEMA3A 3'UTR 0.29 TCGA-55-6968-01 7 97874250 97874250 C - TECPR1 Frame_Shift_Del p.E119Sfs*78 0.21 TCGA-55-6968-01 7 98988657 98988657 G C ARPC1B Silent p.G214G 0.17 TCGA-55-6968-01 7 99097648 99097648 C G ZNF394 Silent p.A23A 0.12 TCGA-55-6968-01 8 102381581 102381581 G T NACAP1 RNA 0.25 TCGA-55-6968-01 8 103663609 103663609 G A KLF10 Silent p.V317V 0.08 TCGA-55-6968-01 8 104413876 104413876 T A SLC25A32 Missense_Mutation p.Y227F 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-55-6968-01 8 105503566 105503566 C G LRP12 Missense_Mutation p.E639Q 0.06 tolerated(0.1) possibly_damaging(0.678) TCGA-55-6968-01 8 10583643 10583643 C A SOX7 Missense_Mutation p.G310C 0.48 deleterious(0.04) probably_damaging(1) TCGA-55-6968-01 8 106814336 106814336 C A ZFPM2 Missense_Mutation p.P676T 0.30 tolerated(0.17) benign(0.046) TCGA-55-6968-01 8 106814337 106814337 C T ZFPM2 Missense_Mutation p.P676L 0.29 tolerated(0.09) benign(0.046) TCGA-55-6968-01 8 107782193 107782193 G A ABRA Nonsense_Mutation p.Q76* 0.18 TCGA-55-6968-01 8 119122705 119122705 T C EXT1 Missense_Mutation p.N194S 0.27 tolerated(0.22) probably_damaging(0.999) TCGA-55-6968-01 8 124664555 124664555 G C KLHL38 Missense_Mutation p.I204M 0.25 deleterious(0) possibly_damaging(0.737) TCGA-55-6968-01 8 141381239 141381239 G C TRAPPC9 Missense_Mutation p.S490C 0.12 deleterious(0) probably_damaging(0.994) TCGA-55-6968-01 8 1496849 1496849 C T DLGAP2 5'UTR 0.50 TCGA-55-6968-01 8 17218733 17218733 C G MTMR7 Missense_Mutation p.E121Q 0.35 tolerated(0.56) benign(0.02) TCGA-55-6968-01 8 28218455 28218455 T C ZNF395 Missense_Mutation p.K63E 0.18 tolerated(1) benign(0.164) TCGA-55-6968-01 8 29194882 29194882 C A DUSP4 Silent p.A282A 0.31 TCGA-55-6968-01 8 3165998 3165998 G T CSMD1 Missense_Mutation p.P1220Q 0.32 probably_damaging(1) TCGA-55-6968-01 8 35616922 35616922 C T UNC5D Missense_Mutation p.L750F 0.14 deleterious(0) possibly_damaging(0.851) TCGA-55-6968-01 8 48875354 48875354 G T MCM4 Missense_Mutation p.A178S 0.24 tolerated(0.51) benign(0.006) TCGA-55-6968-01 8 59404944 59404944 G T CYP7A1 Missense_Mutation p.H395N 0.32 deleterious(0) probably_damaging(1) TCGA-55-6968-01 8 69434188 69434188 G T C8orf34 Missense_Mutation p.G307V 0.26 tolerated(0.25) benign(0.234) TCGA-55-6968-01 8 76452200 76452200 G A HNF4G 5'UTR 0.20 TCGA-55-6968-01 8 87076574 87076574 G T PSKH2 Silent p.R158R 0.43 TCGA-55-6968-01 8 89068422 89068422 G - MMP16 Frame_Shift_Del p.P436Lfs*31 0.26 TCGA-55-6968-01 8 95524233 95524233 G C KIAA1429 Missense_Mutation p.P946A 0.08 tolerated(1) benign(0.003) TCGA-55-6968-01 9 100862278 100862278 T A TRIM14 Missense_Mutation p.M158L 0.31 tolerated(1) benign(0) TCGA-55-6968-01 9 107550273 107550273 G A ABCA1 Silent p.N2044N 0.34 TCGA-55-6968-01 9 117138981 117138981 C G AKNA Missense_Mutation p.R369T 0.29 deleterious(0) possibly_damaging(0.848) TCGA-55-6968-01 9 119858355 119858355 G T ASTN2 Missense_Mutation p.T364K 0.33 deleterious_low_confidence(0.01) unknown(0) TCGA-55-6968-01 9 123808522 123808522 C A C5 Missense_Mutation p.G69C 0.17 deleterious(0.01) possibly_damaging(0.687) TCGA-55-6968-01 9 123904504 123904504 G C CNTRL Missense_Mutation p.E943Q 0.51 probably_damaging(0.999) TCGA-55-6968-01 9 124751414 124751414 G A TTLL11 Intron 0.21 TCGA-55-6968-01 9 128678060 128678060 G C PBX3 Missense_Mutation p.E124Q 0.28 tolerated(0.11) possibly_damaging(0.491) TCGA-55-6968-01 9 130830761 130830761 C T SLC25A25 Nonsense_Mutation p.Q55* 0.28 TCGA-55-6968-01 9 131843387 131843387 G C DOLPP1 5'UTR 0.07 TCGA-55-6968-01 9 139752026 139752026 G C MAMDC4 Missense_Mutation p.E772Q 0.05 tolerated(0.13) probably_damaging(0.913) TCGA-55-6968-01 9 140953581 140953581 C T CACNA1B Silent p.I1508I 0.37 TCGA-55-6968-01 9 14720375 14720375 G A CER1 Missense_Mutation p.H173Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-55-6968-01 9 14722314 14722314 C A CER1 Missense_Mutation p.M119I 0.25 tolerated(0.46) benign(0.003) TCGA-55-6968-01 9 2123791 2123791 G A SMARCA2 Missense_Mutation p.E1279K 0.10 benign(0.292) TCGA-55-6968-01 9 27202905 27202905 C G TEK Missense_Mutation p.S666C 0.05 deleterious(0.02) probably_damaging(0.992) TCGA-55-6968-01 9 27949418 27949418 G T LINGO2 Missense_Mutation p.Q418K 0.30 deleterious(0.03) benign(0.36) TCGA-55-6968-01 9 33056169 33056169 G A SMU1 Missense_Mutation p.A355V 0.33 tolerated(0.54) benign(0.032) TCGA-55-6968-01 9 35720892 35720892 C G TLN1 Missense_Mutation p.D375H 0.30 deleterious(0) probably_damaging(0.924) TCGA-55-6968-01 9 43816737 43816737 C A CNTNAP3B Missense_Mutation p.D281E 0.15 deleterious(0.02) benign(0.039) TCGA-55-6968-01 9 6013096 6013096 C G RANBP6 Missense_Mutation p.D838H 0.36 deleterious(0) probably_damaging(0.957) TCGA-55-6968-01 9 71851058 71851058 G A TJP2 Missense_Mutation p.R663Q 0.30 deleterious(0) probably_damaging(0.951) TCGA-55-6968-01 9 72933808 72933808 G C SMC5 Missense_Mutation p.K693N 0.19 tolerated(0.1) benign(0.008) TCGA-55-6968-01 9 80262607 80262607 C G GNA14 Missense_Mutation p.E35Q 0.23 tolerated(0.05) benign(0.017) TCGA-55-6968-01 9 86593195 86593195 C T HNRNPK Splice_Site 0.18 TCGA-55-6968-01 9 96859842 96859842 G T PTPDC1 Nonsense_Mutation p.E330* 0.25 TCGA-55-6968-01 9 99408273 99408273 G A AAED1 Missense_Mutation p.S152L 0.07 tolerated(0.43) benign(0.012) TCGA-55-6968-01 X 100104356 100104356 C G NOX1 Missense_Mutation p.L452F 0.44 deleterious(0.02) probably_damaging(0.973) TCGA-55-6968-01 X 103432893 103432893 G C FAM199X Missense_Mutation p.G301A 0.05 tolerated_low_confidence(0.2) benign(0.005) TCGA-55-6968-01 X 106186356 106186356 C G MORC4 Missense_Mutation p.D589H 0.11 deleterious(0.02) benign(0.043) TCGA-55-6968-01 X 118223140 118223140 G A KIAA1210 Missense_Mutation p.L685F 0.58 tolerated(0.87) benign(0.041) TCGA-55-6968-01 X 132160483 132160483 G T USP26 Missense_Mutation p.P589H 0.66 deleterious(0.01) possibly_damaging(0.551) TCGA-55-6968-01 X 135430006 135430006 G A GPR112 Missense_Mutation p.E1381K 0.07 deleterious(0.04) benign(0.028) TCGA-55-6968-01 X 149013498 149013498 C T MAGEA8 Missense_Mutation p.P151L 0.62 deleterious(0.04) probably_damaging(0.933) TCGA-55-6968-01 X 2407787 2407787 G C ZBED1 Missense_Mutation p.S325C 0.22 deleterious(0.03) probably_damaging(0.947) TCGA-55-6968-01 X 31676131 31676131 G C DMD Missense_Mutation p.A2668G 0.61 possibly_damaging(0.567) TCGA-55-6968-01 X 34961093 34961093 G C FAM47B Missense_Mutation p.V49L 0.52 deleterious(0.02) probably_damaging(0.993) TCGA-55-6968-01 X 44928864 44928865 - T KDM6A Frame_Shift_Ins p.G656Wfs*2 0.48 TCGA-55-6968-01 X 45010943 45010943 C G CXorf36 Missense_Mutation p.R419T 0.16 deleterious(0) benign(0.015) TCGA-55-6968-01 X 47315755 47315755 C T ZNF41 Missense_Mutation p.E39K 0.57 deleterious(0.04) benign(0.359) TCGA-55-6968-01 X 50056882 50056882 G A CCNB3 Missense_Mutation p.M1150I 0.21 deleterious(0) probably_damaging(0.994) TCGA-55-6968-01 X 53578045 53578045 C G HUWE1 Missense_Mutation p.D3068H 0.28 probably_damaging(0.961) TCGA-55-6968-01 X 53578103 53578103 C T HUWE1 Silent p.Q3048Q 0.43 TCGA-55-6968-01 X 66765123 66765123 G C AR Silent p.A45A 0.50 TCGA-55-6968-01 X 70339602 70339602 C T MED12 Missense_Mutation p.R91C 0.54 possibly_damaging(0.676) TCGA-55-6968-01 X 70339603 70339603 G T MED12 Missense_Mutation p.R91L 0.57 benign(0.201) TCGA-55-6968-01 X 70824184 70824184 G C ACRC Missense_Mutation p.E353Q 0.64 unknown(0) TCGA-55-6968-01 X 74494434 74494434 G C UPRT Missense_Mutation p.M115I 0.57 tolerated(0.22) benign(0.015) TCGA-55-6969-01 10 102747076 102747076 C T MRPL43 Missense_Mutation p.G42D 0.12 deleterious(0) probably_damaging(0.992) TCGA-55-6969-01 10 105365603 105365603 C T SH3PXD2A Silent p.Q432Q 0.23 TCGA-55-6969-01 10 124340392 124340392 C A DMBT1 Silent p.S338S 0.09 TCGA-55-6969-01 10 124361496 124361496 G T DMBT1 Missense_Mutation p.R1176L 0.12 tolerated(0.28) unknown(0) TCGA-55-6969-01 10 126490359 126490359 C - FAM175B 5'UTR 0.15 TCGA-55-6969-01 10 129845865 129845865 G T PTPRE Intron 0.19 TCGA-55-6969-01 10 135101714 135101714 C G TUBGCP2 Silent p.T575T 0.06 TCGA-55-6969-01 10 29599036 29599036 C G LYZL1 Intron 0.22 TCGA-55-6969-01 10 55913019 55913019 C A PCDH15 Missense_Mutation p.G542V 0.12 deleterious(0) probably_damaging(1) TCGA-55-6969-01 10 60573725 60573725 A C BICC1 Missense_Mutation p.K838Q 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-55-6969-01 10 64565465 64565465 G T ADO Missense_Mutation p.D216Y 0.25 deleterious(0.01) possibly_damaging(0.593) TCGA-55-6969-01 10 69957149 69957149 C A MYPN Missense_Mutation p.Q1067K 0.19 deleterious(0.02) benign(0.22) TCGA-55-6969-01 10 71686841 71686841 A T COL13A1 Splice_Site p.X456_splice 0.13 TCGA-55-6969-01 10 82267000 82267000 T A TSPAN14 Missense_Mutation p.L50H 0.10 deleterious(0) probably_damaging(0.984) TCGA-55-6969-01 10 98078223 98078223 G A DNTT Nonsense_Mutation p.W106* 0.11 TCGA-55-6969-01 11 105804662 105804662 A G GRIA4 Missense_Mutation p.Y754C 0.12 deleterious(0) probably_damaging(1) TCGA-55-6969-01 11 113683174 113683174 C A USP28 Missense_Mutation p.G599V 0.15 deleterious(0) probably_damaging(1) TCGA-55-6969-01 11 115099869 115099869 C T CADM1 Missense_Mutation p.G229R 0.15 deleterious(0.04) possibly_damaging(0.474) TCGA-55-6969-01 11 123601246 123601246 T A ZNF202 Silent p.A117A 0.26 TCGA-55-6969-01 11 124310874 124310874 C T OR8B8 Silent p.V36V 0.13 TCGA-55-6969-01 11 1261536 1261536 G A MUC5B Missense_Mutation p.A1301T 0.10 unknown(0) TCGA-55-6969-01 11 130318936 130318936 G T ADAMTS15 Missense_Mutation p.R23L 0.15 tolerated(0.17) benign(0.002) TCGA-55-6969-01 11 130318937 130318937 G T ADAMTS15 Silent p.R23R 0.12 TCGA-55-6969-01 11 34093306 34093306 A G CAPRIN1 Missense_Mutation p.K84E 0.13 deleterious(0.01) benign(0.1) TCGA-55-6969-01 11 34673338 34673338 G A EHF Missense_Mutation p.S199N 0.19 tolerated(0.28) benign(0.002) TCGA-55-6969-01 11 47707521 47707521 C A AGBL2 Missense_Mutation p.C571F 0.20 deleterious(0) probably_damaging(1) TCGA-55-6969-01 11 4790811 4790811 C A OR51F1 Nonsense_Mutation p.E113* 0.29 TCGA-55-6969-01 11 49175861 49175861 C A FOLH1 Missense_Mutation p.V603F 0.14 tolerated(0.18) possibly_damaging(0.459) TCGA-55-6969-01 11 4936008 4936008 C A OR51G2 Missense_Mutation p.V296F 0.21 deleterious(0) possibly_damaging(0.594) TCGA-55-6969-01 11 4944943 4944943 C A OR51G1 Silent p.V209V 0.11 TCGA-55-6969-01 11 49974488 49974488 A T OR4C13 Missense_Mutation p.I172L 0.08 deleterious_low_confidence(0.03) possibly_damaging(0.777) TCGA-55-6969-01 11 5079889 5079889 C A OR52E2 Silent p.T323T 0.18 TCGA-55-6969-01 11 5153145 5153145 G T OR52A5 Missense_Mutation p.T243K 0.11 deleterious(0) probably_damaging(1) TCGA-55-6969-01 11 5255305 5255305 A G HBD Silent p.A77A 0.16 TCGA-55-6969-01 11 55861007 55861007 C T OR8I2 Missense_Mutation p.S75F 0.13 deleterious(0) probably_damaging(0.998) TCGA-55-6969-01 11 56086481 56086483 ACA CC OR8K3 Frame_Shift_Del p.R233Sfs*12 0.12 TCGA-55-6969-01 11 56237417 56237417 G C OR5M3 Missense_Mutation p.A186G 0.22 deleterious(0) benign(0.104) TCGA-55-6969-01 11 58723389 58723389 G C GLYATL1 Silent p.V297V 0.09 TCGA-55-6969-01 11 59283148 59283148 A C OR4D9 Missense_Mutation p.I255L 0.05 deleterious(0.01) possibly_damaging(0.802) TCGA-55-6969-01 11 60161321 60161321 G C MS4A7 Missense_Mutation p.R237P 0.13 deleterious_low_confidence(0.01) benign(0.282) TCGA-55-6969-01 11 62295850 62295850 C A AHNAK Missense_Mutation p.K2013N 0.11 possibly_damaging(0.669) TCGA-55-6969-01 11 6265462 6265462 G C CNGA4 Missense_Mutation p.E517D 0.10 tolerated(0.05) possibly_damaging(0.751) TCGA-55-6969-01 11 62931451 62931451 G T SLC22A25 Missense_Mutation p.P497T 0.07 deleterious(0) probably_damaging(0.984) TCGA-55-6969-01 11 63961668 63961668 C T STIP1 Missense_Mutation p.S76L 0.22 deleterious(0.04) probably_damaging(0.943) TCGA-55-6969-01 11 64359088 64359088 G T SLC22A12 Missense_Mutation p.Q20H 0.13 tolerated(0.2) probably_damaging(0.999) TCGA-55-6969-01 11 64374793 64374793 G T NRXN2 Missense_Mutation p.Q1672K 0.14 deleterious(0) benign(0.092) TCGA-55-6969-01 11 64397967 64397967 C T NRXN2 Missense_Mutation p.D1222N 0.09 deleterious(0) probably_damaging(0.97) TCGA-55-6969-01 11 65684928 65684928 C G C11orf68 3'UTR 0.18 TCGA-55-6969-01 11 66357994 66357994 C A CCDC87 Silent p.S831S 0.06 TCGA-55-6969-01 11 66985245 66985245 A G KDM2A Missense_Mutation p.Y244C 0.22 deleterious(0) probably_damaging(1) TCGA-55-6969-01 11 69063686 69063686 G C MYEOV Missense_Mutation p.A257P 0.09 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-55-6969-01 11 87032340 87032340 A T TMEM135 Missense_Mutation p.T448S 0.11 tolerated(0.67) benign(0.001) TCGA-55-6969-01 11 88924409 88924409 T G TYR Missense_Mutation p.S287A 0.06 tolerated(0.42) benign(0.001) TCGA-55-6969-01 11 8947390 8947390 T A C11orf16 Missense_Mutation p.Q275L 0.07 tolerated(0.17) possibly_damaging(0.805) TCGA-55-6969-01 11 9052304 9052304 C A SCUBE2 Splice_Site p.X724_splice 0.10 TCGA-55-6969-01 11 93754597 93754597 G A HEPHL1 Silent p.L21L 0.14 TCGA-55-6969-01 12 10337952 10337952 A G TMEM52B Missense_Mutation p.H21R 0.14 tolerated(0.53) probably_damaging(0.997) TCGA-55-6969-01 12 113614678 113614678 C A DDX54 Missense_Mutation p.S240I 0.14 deleterious(0.02) possibly_damaging(0.578) TCGA-55-6969-01 12 113614682 113614682 G A DDX54 Nonsense_Mutation p.Q239* 0.14 TCGA-55-6969-01 12 121154531 121154531 A T UNC119B Silent p.T153T 0.10 TCGA-55-6969-01 12 132472367 132472367 G T EP400 Nonsense_Mutation p.E781* 0.23 TCGA-55-6969-01 12 133253148 133253148 T - POLE Frame_Shift_Del p.Y298Sfs*2 0.11 TCGA-55-6969-01 12 34175423 34175423 G C ALG10 5'UTR 0.05 TCGA-55-6969-01 12 41337841 41337841 G T CNTN1 Missense_Mutation p.V518F 0.12 deleterious(0.01) probably_damaging(0.979) TCGA-55-6969-01 12 41374759 41374759 C T CNTN1 Missense_Mutation p.T618I 0.12 deleterious(0) probably_damaging(0.993) TCGA-55-6969-01 12 45171025 45171025 T G NELL2 Missense_Mutation p.T277P 0.25 deleterious(0.01) possibly_damaging(0.827) TCGA-55-6969-01 12 45567501 45567501 T C PLEKHA8P1 RNA 0.13 TCGA-55-6969-01 12 52967151 52967151 G T KRT74 Silent p.R137R 0.18 TCGA-55-6969-01 12 54403006 54403006 G A HOXC8 5'UTR 0.24 TCGA-55-6969-01 12 54797565 54797565 T A ITGA5 Splice_Site p.X541_splice 0.14 TCGA-55-6969-01 12 55356574 55356574 G T TESPA1 Missense_Mutation p.Q370K 0.18 tolerated_low_confidence(0.39) benign(0.006) TCGA-55-6969-01 12 55725587 55725587 A C OR6C3 Missense_Mutation p.S35R 0.10 deleterious_low_confidence(0) possibly_damaging(0.774) TCGA-55-6969-01 12 56222112 56222112 T G DNAJC14 Missense_Mutation p.N111H 0.08 deleterious_low_confidence(0.01) benign(0.309) TCGA-55-6969-01 12 5685148 5685148 G T ANO2 Missense_Mutation p.P825T 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-6969-01 12 58006766 58006766 G T ARHGEF25 Missense_Mutation p.G90C 0.13 tolerated(0.15) probably_damaging(0.984) TCGA-55-6969-01 12 71029521 71029521 G T PTPRB Silent p.L127L 0.14 TCGA-55-6969-01 12 96259135 96259135 T C SNRPF Silent p.L55L 0.07 TCGA-55-6969-01 13 103443408 103443408 C A KDELC1 Missense_Mutation p.G309V 0.13 deleterious(0) probably_damaging(1) TCGA-55-6969-01 13 24243135 24243136 - T TNFRSF19 Frame_Shift_Ins p.V383Gfs*78 0.11 TCGA-55-6969-01 13 36141140 36141140 A C NBEA Silent p.R2341R 0.11 TCGA-55-6969-01 13 42179326 42179326 C A VWA8 Missense_Mutation p.R1655L 0.13 deleterious(0) possibly_damaging(0.869) TCGA-55-6969-01 13 48528531 48528531 C G SUCLA2 Missense_Mutation p.V322L 0.15 deleterious(0) possibly_damaging(0.885) TCGA-55-6969-01 13 77581777 77581777 G A FBXL3 Missense_Mutation p.P264S 0.15 deleterious(0.04) benign(0.099) TCGA-55-6969-01 13 95121091 95121091 C G DCT Silent p.G168G 0.12 TCGA-55-6969-01 13 98116573 98116573 G T RAP2A Missense_Mutation p.M143I 0.15 tolerated(0.43) benign(0.014) TCGA-55-6969-01 13 99992718 99992718 G T UBAC2 Nonsense_Mutation p.G236* 0.13 TCGA-55-6969-01 14 105415801 105415801 G A AHNAK2 Missense_Mutation p.P1996L 0.19 probably_damaging(1) TCGA-55-6969-01 14 106552704 106552704 A T IGHV3-9 Missense_Mutation p.F9Y 0.11 deleterious_low_confidence(0.01) benign(0.158) TCGA-55-6969-01 14 107170215 107170215 G T IGHV1-69 Missense_Mutation p.L23M 0.11 deleterious(0) probably_damaging(0.988) TCGA-55-6969-01 14 107170381 107170381 G A IGHV1-69 5'UTR 0.13 TCGA-55-6969-01 14 20443861 20443861 A C OR4K15 Missense_Mutation p.I62L 0.05 deleterious(0.02) benign(0.126) TCGA-55-6969-01 14 31354733 31354733 C T COCH Silent p.A289A 0.16 TCGA-55-6969-01 14 51448785 51448785 G A TRIM9 Missense_Mutation p.S547L 0.12 tolerated(0.72) benign(0.03) TCGA-55-6969-01 14 53175037 53175037 A T PSMC6 Missense_Mutation p.Q46H 0.12 tolerated(0.07) benign(0.005) TCGA-55-6969-01 14 55236868 55236868 A C SAMD4A Missense_Mutation p.Q548P 0.15 deleterious(0) possibly_damaging(0.762) TCGA-55-6969-01 14 60758173 60758173 G C PPM1A Splice_Site p.X446_splice 0.06 TCGA-55-6969-01 14 65252649 65252649 C A SPTB Missense_Mutation p.L1194F 0.13 tolerated(0.71) benign(0.01) TCGA-55-6969-01 14 70714365 70714365 C A ADAM21P1 RNA 0.27 TCGA-55-6969-01 14 94063867 94063867 T A UNC79 Missense_Mutation p.I941K 0.17 deleterious(0) probably_damaging(0.998) TCGA-55-6969-01 14 94915007 94915007 G T SERPINA11 Silent p.P35P 0.13 TCGA-55-6969-01 14 96180314 96180314 C A TCL1A Missense_Mutation p.K30N 0.15 tolerated(1) benign(0.003) TCGA-55-6969-01 15 22382496 22382496 A T OR4N4 Silent p.V8V 0.09 TCGA-55-6969-01 15 24921209 24921209 C - NPAP1 Frame_Shift_Del p.F65Lfs*50 0.10 TCGA-55-6969-01 15 28427567 28427567 C A HERC2 Missense_Mutation p.G2973C 0.21 probably_damaging(1) TCGA-55-6969-01 15 33765620 33765620 G T RYR3 Nonsense_Mutation p.E18* 0.15 TCGA-55-6969-01 15 33954739 33954739 C A RYR3 Missense_Mutation p.P1670T 0.13 benign(0.238) TCGA-55-6969-01 15 49118221 49118221 T A SHC4 Nonsense_Mutation p.K614* 0.14 TCGA-55-6969-01 15 51780177 51780177 C A DMXL2 Missense_Mutation p.A1731S 0.11 deleterious(0) probably_damaging(0.999) TCGA-55-6969-01 15 54916114 54916114 C A UNC13C Missense_Mutation p.S2107R 0.14 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-55-6969-01 15 65551567 65551567 G A PARP16 3'UTR 0.15 TCGA-55-6969-01 15 74179999 74179999 G T TBC1D21 Silent p.V272V 0.14 TCGA-55-6969-01 15 78894553 78894553 G T CHRNA3 Missense_Mutation p.T144N 0.13 tolerated(0.8) benign(0.016) TCGA-55-6969-01 15 84651075 84651075 C T ADAMTSL3 Missense_Mutation p.L899F 0.11 deleterious(0.01) possibly_damaging(0.894) TCGA-55-6969-01 16 1144758 1144758 C - C1QTNF8 Frame_Shift_Del p.L56Cfs*8 0.09 TCGA-55-6969-01 16 12061593 12061593 T A TNFRSF17 Silent p.A148A 0.10 TCGA-55-6969-01 16 1306531 1306531 C G TPSD1 Missense_Mutation p.L33V 0.11 tolerated(0.29) benign(0.019) TCGA-55-6969-01 16 15457672 15457672 G T NPIPA5 Silent p.P299P 0.09 TCGA-55-6969-01 16 19639973 19639973 A G C16orf62 Silent p.R555R 0.11 TCGA-55-6969-01 16 21031029 21031029 C A DNAH3 Missense_Mutation p.R1980L 0.11 deleterious(0) benign(0.338) TCGA-55-6969-01 16 31374564 31374564 G T ITGAX Missense_Mutation p.V527L 0.16 tolerated(0.1) benign(0.417) TCGA-55-6969-01 16 3529593 3529593 A G NAA60 Missense_Mutation p.H78R 0.11 tolerated(0.14) benign(0.039) TCGA-55-6969-01 16 49671062 49671062 G - ZNF423 Frame_Shift_Del p.C667* 0.10 TCGA-55-6969-01 16 55522585 55522585 G A MMP2 Silent p.E321E 0.25 TCGA-55-6969-01 16 55907881 55907881 G T CES5A Missense_Mutation p.L77M 0.14 deleterious(0.03) probably_damaging(0.986) TCGA-55-6969-01 16 58011780 58011780 C A TEPP Silent p.S75S 0.11 TCGA-55-6969-01 16 70935048 70935048 C T HYDIN Silent p.R2969R 0.07 TCGA-55-6969-01 17 10534949 10534949 C A MYH3 Missense_Mutation p.K1755N 0.23 deleterious(0.02) benign(0.31) TCGA-55-6969-01 17 10538338 10538338 T C MYH3 Missense_Mutation p.K1392R 0.10 tolerated(0.11) probably_damaging(0.989) TCGA-55-6969-01 17 13980233 13980233 A T COX10 Missense_Mutation p.E120V 0.28 tolerated(0.16) benign(0.272) TCGA-55-6969-01 17 15134345 15134345 C A PMP22 Missense_Mutation p.W124C 0.16 tolerated(0.17) probably_damaging(0.995) TCGA-55-6969-01 17 21319139 21319139 T A KCNJ12 Missense_Mutation p.V162E 0.10 deleterious(0) probably_damaging(0.995) TCGA-55-6969-01 17 3582905 3582905 G T P2RX5 Missense_Mutation p.P413Q 0.19 tolerated_low_confidence(0.59) benign(0.003) TCGA-55-6969-01 17 3657184 3657184 G A ITGAE Missense_Mutation p.L474F 0.22 tolerated(0.72) benign(0.002) TCGA-55-6969-01 17 39786773 39786773 C A KRT42P RNA 0.44 TCGA-55-6969-01 17 40265817 40265817 C A KAT2A Silent p.V788V 0.20 TCGA-55-6969-01 17 40322232 40322232 G A KCNH4 Missense_Mutation p.A428V 0.18 deleterious(0.01) benign(0.164) TCGA-55-6969-01 17 41020640 41020640 C T AOC4P RNA 0.11 TCGA-55-6969-01 17 42386248 42386248 C T RUNDC3A Silent p.S16S 0.21 TCGA-55-6969-01 17 46606913 46606913 G A HOXB1 Missense_Mutation p.S301F 0.17 deleterious_low_confidence(0) possibly_damaging(0.657) TCGA-55-6969-01 17 4789760 4789760 T C MINK1 Missense_Mutation p.I263T 0.29 tolerated(0.42) benign(0.415) TCGA-55-6969-01 17 4797591 4797591 G T MINK1 Missense_Mutation p.K931N 0.32 tolerated(0.09) possibly_damaging(0.868) TCGA-55-6969-01 17 50235099 50235099 G T CA10 Silent p.I16I 0.22 TCGA-55-6969-01 17 57287753 57287754 - A SMG8 Frame_Shift_Ins p.S115Ffs*12 0.35 TCGA-55-6969-01 17 57288806 57288806 A T SMG8 Missense_Mutation p.E465V 0.10 deleterious(0.01) benign(0.425) TCGA-55-6969-01 17 57288807 57288807 G T SMG8 Missense_Mutation p.E465D 0.11 tolerated(0.43) benign(0.011) TCGA-55-6969-01 17 60043926 60043926 T G MED13 Silent p.L1426L 0.18 TCGA-55-6969-01 17 60754766 60754766 G T MRC2 Silent p.P657P 0.19 TCGA-55-6969-01 17 7139375 7139375 C T PHF23 Missense_Mutation p.E291K 0.10 tolerated_low_confidence(0.21) benign(0.021) TCGA-55-6969-01 17 7249762 7249762 G T ACAP1 Missense_Mutation p.C320F 0.13 deleterious(0.03) probably_damaging(0.987) TCGA-55-6969-01 17 72588152 72588152 A T C17orf77 5'UTR 0.14 TCGA-55-6969-01 17 75085488 75085488 G T SEC14L1 Intron 0.08 TCGA-55-6969-01 17 7577120 7577120 C A TP53 Missense_Mutation p.R273L 0.26 deleterious(0) probably_damaging(0.993) TCGA-55-6969-01 17 76399770 76399770 G A PGS1 Silent p.Q334Q 0.25 TCGA-55-6969-01 17 78318885 78318885 C T RNF213 Silent p.F2250F 0.07 TCGA-55-6969-01 17 8445459 8445459 T C MYH10 Missense_Mutation p.D524G 0.06 benign(0.442) TCGA-55-6969-01 17 9783735 9783735 G T GLP2R Missense_Mutation p.V396F 0.24 deleterious(0) probably_damaging(0.994) TCGA-55-6969-01 17 9821352 9821352 T A GAS7 Missense_Mutation p.Q428L 0.15 tolerated(0.08) benign(0.079) TCGA-55-6969-01 18 10468599 10468599 G A APCDD1 Silent p.R64R 0.09 TCGA-55-6969-01 18 13049050 13049050 G T CEP192 Nonsense_Mutation p.E754* 0.11 TCGA-55-6969-01 18 14791461 14791461 A T ANKRD30B Missense_Mutation p.E599V 0.09 deleterious(0.04) benign(0.032) TCGA-55-6969-01 18 14808564 14808564 G C ANKRD30B Missense_Mutation p.D767H 0.12 tolerated(0.54) benign(0.015) TCGA-55-6969-01 18 29210947 29210947 C A B4GALT6 Missense_Mutation p.A251S 0.12 tolerated(0.28) benign(0.063) TCGA-55-6969-01 18 29704800 29704800 G A RNF138 Missense_Mutation p.V185I 0.25 deleterious(0.05) benign(0.437) TCGA-55-6969-01 18 31323638 31323638 G C ASXL3 Missense_Mutation p.A1276P 0.15 possibly_damaging(0.682) TCGA-55-6969-01 18 43671703 43671703 T A ATP5A1 Missense_Mutation p.H85L 0.06 deleterious_low_confidence(0.01) benign(0.005) TCGA-55-6969-01 18 48331607 48331607 C A MRO Missense_Mutation p.V130F 0.11 tolerated(0.15) possibly_damaging(0.618) TCGA-55-6969-01 18 56414822 56414822 A T MALT1 Silent p.A741A 0.09 TCGA-55-6969-01 18 60985555 60985555 C T BCL2 Missense_Mutation p.M115I 0.11 tolerated(0.05) possibly_damaging(0.758) TCGA-55-6969-01 18 61305340 61305340 A G SERPINB4 Silent p.T262T 0.07 TCGA-55-6969-01 18 61465837 61465837 G - SERPINB7 Splice_Site p.X152_splice 0.21 TCGA-55-6969-01 18 64211444 64211444 G T CDH19 Missense_Mutation p.H326Q 0.15 tolerated(0.36) benign(0.003) TCGA-55-6969-01 18 77456032 77456032 A G CTDP1 Missense_Mutation p.M152V 0.11 deleterious(0) possibly_damaging(0.727) TCGA-55-6969-01 19 11144003 11144003 A T SMARCA4 Missense_Mutation p.Q1195L 0.08 benign(0.306) TCGA-55-6969-01 19 1432542 1432542 C - DAZAP1 Frame_Shift_Del p.P301Qfs*34 0.16 TCGA-55-6969-01 19 14710933 14710933 C G CLEC17A Missense_Mutation p.A278G 0.28 deleterious(0) probably_damaging(0.998) TCGA-55-6969-01 19 15233937 15233937 G T ILVBL Missense_Mutation p.T152N 0.13 deleterious(0.01) possibly_damaging(0.795) TCGA-55-6969-01 19 17394727 17394727 G T ANKLE1 Missense_Mutation p.R385M 0.15 deleterious(0.04) probably_damaging(0.967) TCGA-55-6969-01 19 19327781 19327781 T A NCAN Missense_Mutation p.W7R 0.20 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-55-6969-01 19 20117592 20117592 C A ZNF682 Missense_Mutation p.W240L 0.16 tolerated(0.66) benign(0.12) TCGA-55-6969-01 19 22156076 22156076 C A ZNF208 Missense_Mutation p.G587V 0.15 deleterious(0) probably_damaging(0.991) TCGA-55-6969-01 19 30935392 30935392 C T ZNF536 Missense_Mutation p.A308V 0.13 tolerated(0.12) probably_damaging(0.998) TCGA-55-6969-01 19 31767444 31767444 A G TSHZ3 3'UTR 0.05 TCGA-55-6969-01 19 33106614 33106614 C G ANKRD27 Missense_Mutation p.E709Q 0.06 deleterious(0.03) possibly_damaging(0.832) TCGA-55-6969-01 19 33137521 33137521 C A ANKRD27 Missense_Mutation p.D72Y 0.27 deleterious(0) possibly_damaging(0.861) TCGA-55-6969-01 19 38055732 38055732 T G ZNF571 Missense_Mutation p.K533T 0.06 deleterious(0.03) probably_damaging(0.982) TCGA-55-6969-01 19 38262290 38262290 C G ZNF573 Missense_Mutation p.R39P 0.29 tolerated(0.05) benign(0.079) TCGA-55-6969-01 19 38572407 38572407 A G SIPA1L3 Missense_Mutation p.S68G 0.40 deleterious(0.01) benign(0.101) TCGA-55-6969-01 19 38934885 38934885 C A RYR1 Missense_Mutation p.S174Y 0.17 probably_damaging(0.979) TCGA-55-6969-01 19 39760173 39760173 C G IFNL2 Missense_Mutation p.L106V 0.09 deleterious(0.01) possibly_damaging(0.448) TCGA-55-6969-01 19 39914269 39914269 C T PLEKHG2 Silent p.L859L 0.24 TCGA-55-6969-01 19 43349191 43349191 T G PSG10P RNA 0.03 TCGA-55-6969-01 19 43359741 43359741 G T PSG10P RNA 0.12 TCGA-55-6969-01 19 43967379 43967379 C T LYPD3 Missense_Mutation p.R148Q 0.10 tolerated(0.57) benign(0.058) TCGA-55-6969-01 19 45721530 45721530 C T EXOC3L2 Silent p.E196E 0.26 TCGA-55-6969-01 19 46307688 46307688 G T RSPH6A Missense_Mutation p.T492K 0.27 deleterious(0) probably_damaging(0.999) TCGA-55-6969-01 19 47883131 47883131 G T DHX34 Missense_Mutation p.Q957H 0.21 tolerated(0.07) benign(0.11) TCGA-55-6969-01 19 48565366 48565366 G A PLA2G4C Silent p.H392H 0.32 TCGA-55-6969-01 19 48876967 48876967 C T SYNGR4 Missense_Mutation p.T96I 0.20 tolerated(0.15) possibly_damaging(0.632) TCGA-55-6969-01 19 49225109 49225109 A C RASIP1 Splice_Site p.X898_splice 0.10 TCGA-55-6969-01 19 49671653 49671653 G T TRPM4 Silent p.R195R 0.11 TCGA-55-6969-01 19 50266472 50266472 C T TSKS Silent p.Q11Q 0.19 TCGA-55-6969-01 19 50902661 50902661 G T POLD1 Missense_Mutation p.W79L 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-6969-01 19 51327022 51327022 G T KLK1 5'UTR 0.06 TCGA-55-6969-01 19 51410331 51410331 C G KLK4 Silent p.G208G 0.08 TCGA-55-6969-01 19 51826949 51826949 C A IGLON5 Silent p.A64A 0.21 TCGA-55-6969-01 19 51961291 51961291 C T SIGLEC8 Silent p.R117R 0.08 TCGA-55-6969-01 19 53747077 53747077 C A ZNF677 Missense_Mutation p.R30M 0.14 deleterious(0) possibly_damaging(0.744) TCGA-55-6969-01 19 53747081 53747081 G A ZNF677 Nonsense_Mutation p.Q29* 0.25 TCGA-55-6969-01 19 54177564 54177564 C T MIR498 RNA 0.08 TCGA-55-6969-01 19 54194189 54194189 A C MIR520A RNA 0.11 TCGA-55-6969-01 19 54725719 54725719 G C LILRB3 Silent p.P213P 0.22 TCGA-55-6969-01 19 54742768 54742768 G T LILRA6 3'UTR 0.13 TCGA-55-6969-01 19 55107689 55107689 C T LILRA1 Missense_Mutation p.P332S 0.18 deleterious(0.02) probably_damaging(0.99) TCGA-55-6969-01 19 55378346 55378346 C G KIR3DL2 3'UTR 0.29 TCGA-55-6969-01 19 55649411 55649411 G C TNNT1 Missense_Mutation p.A140G 0.19 deleterious(0.04) probably_damaging(0.95) TCGA-55-6969-01 19 56424590 56424590 G T NLRP13 Missense_Mutation p.P198H 0.07 deleterious(0) probably_damaging(0.999) TCGA-55-6969-01 19 56490773 56490773 C T NLRP8 Silent p.L964L 0.14 TCGA-55-6969-01 19 57286357 57286357 A C ZIM2 Missense_Mutation p.L428R 0.10 tolerated(0.49) benign(0.044) TCGA-55-6969-01 19 57325341 57325341 G T PEG3 Missense_Mutation p.P1490Q 0.11 tolerated(0.14) probably_damaging(0.994) TCGA-55-6969-01 19 57839478 57839478 G C ZNF543 Missense_Mutation p.Q216H 0.24 deleterious(0.05) possibly_damaging(0.863) TCGA-55-6969-01 19 57931245 57931245 G T AC003002.6 Missense_Mutation p.D141Y 0.11 deleterious(0.02) probably_damaging(0.987) TCGA-55-6969-01 19 58132553 58132553 A C ZNF134 Missense_Mutation p.S356R 0.05 deleterious(0.04) probably_damaging(0.996) TCGA-55-6969-01 19 8130927 8130927 C A FBN3 Missense_Mutation p.G2769V 0.25 tolerated(0.34) benign(0.004) TCGA-55-6969-01 19 9059515 9059515 T C MUC16 Missense_Mutation p.S9311G 0.24 unknown(0) TCGA-55-6969-01 1 100176440 100176440 C A FRRS1 Missense_Mutation p.A516S 0.08 deleterious(0.02) benign(0.236) TCGA-55-6969-01 1 111061285 111061285 C G KCNA10 Missense_Mutation p.G42A 0.08 tolerated_low_confidence(0.16) benign(0.028) TCGA-55-6969-01 1 114340623 114340623 C A RSBN1 Missense_Mutation p.D247Y 0.10 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-55-6969-01 1 12157182 12157182 C T TNFRSF8 Missense_Mutation p.P59L 0.24 deleterious(0.03) benign(0.13) TCGA-55-6969-01 1 12336516 12336516 G C VPS13D Silent p.A957A 0.14 TCGA-55-6969-01 1 152187614 152187614 G C HRNR Missense_Mutation p.S2164C 0.03 unknown(0) TCGA-55-6969-01 1 152785227 152785227 G T LCE1B Missense_Mutation p.G102V 0.06 deleterious_low_confidence(0) unknown(0) TCGA-55-6969-01 1 154042923 154042923 T A NUP210L Missense_Mutation p.R794W 0.34 deleterious(0) probably_damaging(0.991) TCGA-55-6969-01 1 155039366 155039366 C T EFNA4 Missense_Mutation p.R92W 0.16 deleterious(0.01) possibly_damaging(0.559) TCGA-55-6969-01 1 156670737 156670737 G A CRABP2 Missense_Mutation p.R60C 0.14 deleterious(0.02) benign(0.11) TCGA-55-6969-01 1 157771796 157771796 G C FCRL1 Silent p.S265S 0.10 TCGA-55-6969-01 1 158262516 158262516 G C CD1C Silent p.L247L 0.15 TCGA-55-6969-01 1 158747383 158747383 G T OR6N2 Missense_Mutation p.L15I 0.12 tolerated(0.4) benign(0.007) TCGA-55-6969-01 1 160093063 160093063 C - ATP1A2 Frame_Shift_Del p.P80Hfs*90 0.11 TCGA-55-6969-01 1 161953628 161953628 G C OLFML2B Missense_Mutation p.S697C 0.18 deleterious(0) probably_damaging(1) TCGA-55-6969-01 1 163318761 163318761 G C NUF2 Missense_Mutation p.R384T 0.15 deleterious(0) probably_damaging(0.999) TCGA-55-6969-01 1 172017776 172017776 G A DNM3 Missense_Mutation p.M407I 0.19 tolerated(0.11) possibly_damaging(0.716) TCGA-55-6969-01 1 17266418 17266418 G A CROCC Silent p.Q546Q 0.11 TCGA-55-6969-01 1 175375656 175375656 G T TNR Missense_Mutation p.F65L 0.17 deleterious(0.01) benign(0.076) TCGA-55-6969-01 1 18808631 18808631 G T KLHDC7A Missense_Mutation p.A386S 0.21 tolerated(0.19) benign(0.081) TCGA-55-6969-01 1 196227378 196227378 C A KCNT2 Missense_Mutation p.A1053S 0.17 tolerated(1) benign(0.178) TCGA-55-6969-01 1 198687428 198687428 T C PTPRC Silent p.F552F 0.13 TCGA-55-6969-01 1 201020122 201020122 C T CACNA1S Missense_Mutation p.C1368Y 0.09 deleterious(0) probably_damaging(1) TCGA-55-6969-01 1 201355871 201355871 C A LAD1 Silent p.V206V 0.19 TCGA-55-6969-01 1 202702845 202702845 G C KDM5B Missense_Mutation p.A1198G 0.10 deleterious(0.01) possibly_damaging(0.799) TCGA-55-6969-01 1 204512011 204512011 G T MDM4 Missense_Mutation p.G204V 0.19 deleterious(0) probably_damaging(1) TCGA-55-6969-01 1 204587869 204587869 C A LRRN2 Missense_Mutation p.D418Y 0.18 deleterious(0.01) possibly_damaging(0.73) TCGA-55-6969-01 1 204955212 204955212 G A NFASC Intron 0.20 TCGA-55-6969-01 1 207087300 207087300 A T FAIM3 Silent p.G59G 0.23 TCGA-55-6969-01 1 211751735 211751735 A T SLC30A1 Missense_Mutation p.W74R 0.11 deleterious(0) probably_damaging(0.998) TCGA-55-6969-01 1 213181662 213181662 C G ANGEL2 Missense_Mutation p.D178H 0.08 deleterious(0) possibly_damaging(0.776) TCGA-55-6969-01 1 215813952 215813952 G T USH2A Silent p.R4972R 0.23 TCGA-55-6969-01 1 215963417 215963417 G T USH2A Missense_Mutation p.T3389N 0.16 benign(0.418) TCGA-55-6969-01 1 22965758 22965758 A T C1QA Missense_Mutation p.Q199L 0.12 deleterious(0) probably_damaging(0.975) TCGA-55-6969-01 1 23191433 23191433 G T EPHB2 Missense_Mutation p.W344L 0.27 deleterious(0) probably_damaging(1) TCGA-55-6969-01 1 235715289 235715289 C G GNG4 3'UTR 0.14 TCGA-55-6969-01 1 237819179 237819179 C A RYR2 Missense_Mutation p.A2675D 0.17 probably_damaging(0.999) TCGA-55-6969-01 1 237865352 237865352 G C RYR2 Missense_Mutation p.V3148L 0.16 possibly_damaging(0.618) TCGA-55-6969-01 1 242035554 242035554 A T EXO1 Silent p.A496A 0.20 TCGA-55-6969-01 1 243778452 243778452 T A AKT3 Silent p.A191A 0.18 TCGA-55-6969-01 1 244724029 244724029 C T C1orf101 Silent p.S363S 0.21 TCGA-55-6969-01 1 248128711 248128711 T A OR2AK2 Missense_Mutation p.D26E 0.04 tolerated(0.08) benign(0.022) TCGA-55-6969-01 1 248129307 248129307 C A OR2AK2 Missense_Mutation p.P225Q 0.12 deleterious(0) probably_damaging(0.993) TCGA-55-6969-01 1 248402299 248402299 C A OR2M4 Silent p.T23T 0.17 TCGA-55-6969-01 1 248436913 248436913 G T OR2T33 Missense_Mutation p.D68E 0.12 deleterious(0) possibly_damaging(0.844) TCGA-55-6969-01 1 248436915 248436915 C T OR2T33 Missense_Mutation p.D68N 0.12 deleterious(0) possibly_damaging(0.899) TCGA-55-6969-01 1 248512576 248512576 G T OR14C36 Missense_Mutation p.C167F 0.09 deleterious(0) probably_damaging(0.996) TCGA-55-6969-01 1 29435868 29435868 C T EPB41 Silent p.D778D 0.09 TCGA-55-6969-01 1 34158539 34158539 C T CSMD2 Missense_Mutation p.C1308Y 0.12 tolerated(0.23) benign(0.038) TCGA-55-6969-01 1 34258104 34258104 C A CSMD2 Missense_Mutation p.E450D 0.09 tolerated(0.18) benign(0.011) TCGA-55-6969-01 1 40770189 40770189 C A COL9A2 Nonsense_Mutation p.E392* 0.12 TCGA-55-6969-01 1 42654511 42654511 C A FOXJ3 Missense_Mutation p.Q514H 0.20 tolerated(0.37) possibly_damaging(0.641) TCGA-55-6969-01 1 44058193 44058193 C T PTPRF Silent p.Y578Y 0.12 TCGA-55-6969-01 1 44878266 44878266 G T RNF220 Missense_Mutation p.G166V 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-6969-01 1 46500346 46500346 C A MAST2 Silent p.R1335R 0.18 TCGA-55-6969-01 1 47685793 47685793 G T TAL1 Silent p.R199R 0.21 TCGA-55-6969-01 1 52704587 52704587 G T ZFYVE9 Missense_Mutation p.D500Y 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-6969-01 1 53236971 53236971 G T ZYG11B Missense_Mutation p.S159I 0.15 deleterious(0.01) benign(0.102) TCGA-55-6969-01 1 71418572 71418572 G T PTGER3 3'UTR 0.18 TCGA-55-6969-01 1 75037148 75037148 G T C1orf173 Missense_Mutation p.P1416T 0.14 tolerated(0.15) benign(0.01) TCGA-55-6969-01 20 20177351 20177351 G A C20orf26 Silent p.K576K 0.25 TCGA-55-6969-01 20 23731380 23731380 C A CST1 Nonsense_Mutation p.E42* 0.27 TCGA-55-6969-01 20 29845557 29845557 C A DEFB115 Missense_Mutation p.P31T 0.32 tolerated(0.06) benign(0.391) TCGA-55-6969-01 20 30525240 30525240 G A TTLL9 Missense_Mutation p.S349N 0.15 tolerated(0.38) possibly_damaging(0.897) TCGA-55-6969-01 20 31609539 31609539 C A BPIFB2 Silent p.A423A 0.08 TCGA-55-6969-01 20 3722989 3722989 T A HSPA12B Missense_Mutation p.F67Y 0.40 deleterious(0.01) probably_damaging(1) TCGA-55-6969-01 20 37580381 37580382 - T FAM83D Frame_Shift_Ins p.N358Qfs*9 0.11 TCGA-55-6969-01 20 40733255 40733255 C A PTPRT Missense_Mutation p.R1165M 0.24 deleterious(0) probably_damaging(0.974) TCGA-55-6969-01 20 42815314 42815314 C T JPH2 Missense_Mutation p.G11E 0.11 deleterious(0) probably_damaging(1) TCGA-55-6969-01 20 44697169 44697169 T A NCOA5 Silent p.P158P 0.16 TCGA-55-6969-01 20 45130851 45130851 G A ZNF334 Missense_Mutation p.P376L 0.20 tolerated(0.12) benign(0.114) TCGA-55-6969-01 20 45354843 45354843 G T SLC2A10 Missense_Mutation p.A390S 0.16 tolerated(0.64) benign(0.015) TCGA-55-6969-01 20 50782517 50782517 G A ZFP64 Missense_Mutation p.P112S 0.21 tolerated(0.23) probably_damaging(0.986) TCGA-55-6969-01 20 54824181 54824181 G T MC3R Missense_Mutation p.E94D 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-55-6969-01 20 57829560 57829560 G C ZNF831 Missense_Mutation p.G1599A 0.11 tolerated(0.06) benign(0.109) TCGA-55-6969-01 20 58645825 58645825 A T C20orf197 Missense_Mutation p.R81S 0.24 tolerated_low_confidence(0.26) benign(0.402) TCGA-55-6969-01 20 61834126 61834126 C A YTHDF1 Missense_Mutation p.G389V 0.15 deleterious(0.03) probably_damaging(0.982) TCGA-55-6969-01 21 15858241 15858241 T C SAMSN1 Missense_Mutation p.S440G 0.14 deleterious_low_confidence(0.01) benign(0.311) TCGA-55-6969-01 21 34399194 34399194 G T OLIG2 Silent p.V8V 0.16 TCGA-55-6969-01 21 40768830 40768830 A C WRB Missense_Mutation p.K164Q 0.27 tolerated(0.08) benign(0.131) TCGA-55-6969-01 21 45113111 45113111 G C RRP1B Silent p.T708T 0.09 TCGA-55-6969-01 21 46321419 46321419 G C ITGB2 Silent p.V243V 0.25 TCGA-55-6969-01 22 17672581 17672581 C A CECR1 Silent p.S291S 0.12 TCGA-55-6969-01 22 21088025 21088025 T A PI4KA Missense_Mutation p.S1387C 0.11 tolerated(1) benign(0.001) TCGA-55-6969-01 22 22453211 22453211 G A IGLV8-61 Missense_Mutation p.G19E 0.19 deleterious(0.03) possibly_damaging(0.744) TCGA-55-6969-01 22 22890704 22890704 C T PRAME Missense_Mutation p.V439M 0.13 tolerated(0.15) possibly_damaging(0.576) TCGA-55-6969-01 22 22930869 22930869 G C IGLV2-33 Missense_Mutation p.A22P 0.11 tolerated_low_confidence(0.17) benign(0.137) TCGA-55-6969-01 22 42473529 42473529 G T FAM109B Nonsense_Mutation p.E78* 0.08 TCGA-55-6969-01 2 103299823 103299823 A G SLC9A2 Missense_Mutation p.S370G 0.19 deleterious(0) probably_damaging(0.994) TCGA-55-6969-01 2 103300704 103300704 T C SLC9A2 Missense_Mutation p.L445S 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-6969-01 2 106710425 106710425 C T UXS1 3'UTR 0.12 TCGA-55-6969-01 2 11720967 11720967 G T GREB1 Intron 0.13 TCGA-55-6969-01 2 132558479 132558479 C A C2orf27B Missense_Mutation p.G11V 0.12 deleterious_low_confidence(0) unknown(0) TCGA-55-6969-01 2 133539909 133539909 T A NCKAP5 Missense_Mutation p.K1492M 0.12 deleterious(0) probably_damaging(0.938) TCGA-55-6969-01 2 133543154 133543154 C G NCKAP5 Missense_Mutation p.K410N 0.15 deleterious(0.01) probably_damaging(0.951) TCGA-55-6969-01 2 141113940 141113940 T A LRP1B Missense_Mutation p.Q3834L 0.13 benign(0.069) TCGA-55-6969-01 2 143973956 143973956 G T ARHGAP15 Missense_Mutation p.V80F 0.11 deleterious(0.05) possibly_damaging(0.554) TCGA-55-6969-01 2 152506707 152506707 C G NEB Missense_Mutation p.A2472P 0.09 probably_damaging(0.971) TCGA-55-6969-01 2 152514544 152514544 C G NEB Missense_Mutation p.A2046P 0.10 probably_damaging(1) TCGA-55-6969-01 2 152522007 152522007 C A NEB Missense_Mutation p.W1693L 0.40 probably_damaging(0.995) TCGA-55-6969-01 2 155566271 155566271 A T KCNJ3 Missense_Mutation p.S287C 0.17 deleterious(0.01) possibly_damaging(0.856) TCGA-55-6969-01 2 165947652 165947652 T C SCN3A Missense_Mutation p.I1671V 0.13 tolerated(0.05) possibly_damaging(0.631) TCGA-55-6969-01 2 168100000 168100000 C A XIRP2 Missense_Mutation p.H700N 0.17 benign(0.026) TCGA-55-6969-01 2 169825981 169825981 T A ABCB11 Missense_Mutation p.E630D 0.12 tolerated(0.22) benign(0.065) TCGA-55-6969-01 2 179416915 179416915 T C TTN Missense_Mutation p.K30238E 0.10 TCGA-55-6969-01 2 182347144 182347144 A - ITGA4 Frame_Shift_Del p.K301Sfs*50 0.14 TCGA-55-6969-01 2 182779942 182779942 G T SSFA2 Splice_Site p.X526_splice 0.13 TCGA-55-6969-01 2 201437173 201437173 C T SGOL2 Nonsense_Mutation p.Q702* 0.16 TCGA-55-6969-01 2 210560018 210560018 G T MAP2 Missense_Mutation p.V1042F 0.19 deleterious_low_confidence(0) benign(0.393) TCGA-55-6969-01 2 21245793 21245793 G T APOB Nonsense_Mutation p.S909* 0.14 TCGA-55-6969-01 2 219903121 219903121 A G CCDC108 Silent p.S111S 0.06 TCGA-55-6969-01 2 220112227 220112227 G T STK16 Silent p.V177V 0.07 TCGA-55-6969-01 2 220424026 220424026 A T OBSL1 Silent p.P1049P 0.18 TCGA-55-6969-01 2 232121319 232121319 C T ARMC9 Silent p.A300A 0.22 TCGA-55-6969-01 2 234590659 234590659 G T UGT1A7 Missense_Mutation p.G26W 0.12 deleterious(0) probably_damaging(1) TCGA-55-6969-01 2 239162142 239162142 C T PER2 Missense_Mutation p.C841Y 0.35 tolerated(1) probably_damaging(0.935) TCGA-55-6969-01 2 27607796 27607796 G A PPM1G Missense_Mutation p.A190V 0.09 tolerated(0.6) possibly_damaging(0.483) TCGA-55-6969-01 2 29295786 29295786 A G C2orf71 Silent p.L448L 0.06 TCGA-55-6969-01 2 32289029 32289029 G A SPAST Silent p.E43E 0.29 TCGA-55-6969-01 2 61258982 61258982 A G PEX13 Missense_Mutation p.H174R 0.16 deleterious(0.03) possibly_damaging(0.906) TCGA-55-6969-01 2 63176133 63176133 A G EHBP1 Missense_Mutation p.I753V 0.17 tolerated_low_confidence(1) benign(0.001) TCGA-55-6969-01 2 64147084 64147084 T A VPS54 Silent p.A699A 0.32 TCGA-55-6969-01 2 68753263 68753263 A G APLF Silent p.Q231Q 0.18 TCGA-55-6969-01 2 71046928 71046928 G T CLEC4F Missense_Mutation p.L53I 0.11 deleterious(0.01) probably_damaging(0.958) TCGA-55-6969-01 2 73195591 73195591 C T SFXN5 Missense_Mutation p.M271I 0.17 deleterious(0.01) possibly_damaging(0.811) TCGA-55-6969-01 2 73651896 73651896 C T ALMS1 Missense_Mutation p.S368L 0.24 benign(0.008) TCGA-55-6969-01 2 86258615 86258615 C G POLR1A Missense_Mutation p.E1472D 0.06 tolerated(0.47) benign(0.006) TCGA-55-6969-01 3 10276333 10276333 G T IRAK2 Missense_Mutation p.S488I 0.30 deleterious(0.02) benign(0.382) TCGA-55-6969-01 3 111432789 111432789 G A PLCXD2 Missense_Mutation p.G227E 0.11 deleterious(0) probably_damaging(1) TCGA-55-6969-01 3 114069274 114069274 T A ZBTB20 Missense_Mutation p.T551S 0.07 tolerated(0.44) benign(0.011) TCGA-55-6969-01 3 114070610 114070610 G C ZBTB20 Missense_Mutation p.D105E 0.18 deleterious(0) probably_damaging(0.991) TCGA-55-6969-01 3 133698348 133698348 C A SLCO2A1 Missense_Mutation p.G71C 0.14 deleterious(0) probably_damaging(1) TCGA-55-6969-01 3 134967256 134967256 G T EPHB1 Silent p.R865R 0.20 TCGA-55-6969-01 3 137807303 137807303 C A DZIP1L Missense_Mutation p.G306V 0.19 deleterious(0) probably_damaging(0.941) TCGA-55-6969-01 3 147114060 147114060 C A ZIC4 Silent p.L139L 0.16 TCGA-55-6969-01 3 150877677 150877677 C G MED12L Missense_Mutation p.A299G 0.17 tolerated(0.09) possibly_damaging(0.755) TCGA-55-6969-01 3 167068230 167068230 A G ZBBX Missense_Mutation p.L169P 0.03 deleterious(0) probably_damaging(0.929) TCGA-55-6969-01 3 169485988 169485988 C A ACTRT3 Missense_Mutation p.Q117H 0.18 deleterious(0.01) possibly_damaging(0.606) TCGA-55-6969-01 3 170715881 170715881 T C SLC2A2 Silent p.G462G 0.16 TCGA-55-6969-01 3 172634254 172634254 G T SPATA16 Silent p.S452S 0.21 TCGA-55-6969-01 3 183778050 183778050 C A HTR3C Missense_Mutation p.F418L 0.14 tolerated(0.12) benign(0.102) TCGA-55-6969-01 3 21478593 21478593 G T ZNF385D Missense_Mutation p.P181Q 0.09 deleterious(0.04) benign(0.188) TCGA-55-6969-01 3 3084014 3084014 A G CNTN4 Missense_Mutation p.S807G 0.18 tolerated(0.61) benign(0.18) TCGA-55-6969-01 3 41996248 41996248 C G ULK4 Missense_Mutation p.E2Q 0.06 deleterious(0.02) possibly_damaging(0.458) TCGA-55-6969-01 3 47469109 47469109 C G SCAP Silent p.L153L 0.12 TCGA-55-6969-01 3 49210153 49210153 A T KLHDC8B 5'UTR 0.22 TCGA-55-6969-01 3 49848049 49848049 C A UBA7 Silent p.L456L 0.23 TCGA-55-6969-01 3 51395231 51395231 G A DOCK3 Missense_Mutation p.A1576T 0.09 tolerated(0.62) benign(0.015) TCGA-55-6969-01 3 51395454 51395454 T A DOCK3 Silent p.P1610P 0.19 TCGA-55-6969-01 3 51749821 51749821 T C GRM2 Missense_Mutation p.S678P 0.24 deleterious(0) probably_damaging(0.991) TCGA-55-6969-01 3 52257839 52257839 C T TLR9 Missense_Mutation p.G319S 0.10 tolerated(0.06) probably_damaging(0.982) TCGA-55-6969-01 3 52282167 52282167 A G PPM1M Splice_Site p.X25_splice 0.33 TCGA-55-6969-01 3 67053770 67053770 G T KBTBD8 Missense_Mutation p.A127S 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-55-6969-01 3 73433740 73433740 G T PDZRN3 Silent p.A659A 0.12 TCGA-55-6969-01 3 95374486 95374486 T G MTHFD2P1 RNA 0.10 TCGA-55-6969-01 4 100261852 100261852 A G ADH1C Missense_Mutation p.C282R 0.10 possibly_damaging(0.762) TCGA-55-6969-01 4 104579428 104579428 C A TACR3 Missense_Mutation p.M227I 0.36 tolerated(0.35) benign(0.003) TCGA-55-6969-01 4 114120256 114120256 A T ANK2 Silent p.A125A 0.15 TCGA-55-6969-01 4 114274375 114274375 T A ANK2 Missense_Mutation p.V1534E 0.30 benign(0.287) TCGA-55-6969-01 4 134071178 134071178 G T PCDH10 5'UTR 0.29 TCGA-55-6969-01 4 134073041 134073041 C A PCDH10 Missense_Mutation p.N582K 0.16 deleterious(0.04) probably_damaging(0.996) TCGA-55-6969-01 4 155156786 155156786 C T DCHS2 Silent p.L2551L 0.28 TCGA-55-6969-01 4 169194528 169194528 C A DDX60 Missense_Mutation p.A826S 0.27 deleterious(0.01) probably_damaging(0.941) TCGA-55-6969-01 4 176594891 176594891 G T GPM6A Silent p.A109A 0.09 TCGA-55-6969-01 4 177648962 177648962 C A VEGFC Missense_Mutation p.M174I 0.30 tolerated(0.06) benign(0.036) TCGA-55-6969-01 4 185012436 185012436 G T ENPP6 Missense_Mutation p.S406Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-55-6969-01 4 186185599 186185599 G T SNX25 Nonsense_Mutation p.E83* 0.25 TCGA-55-6969-01 4 186379887 186379887 C A CCDC110 Missense_Mutation p.E618D 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-55-6969-01 4 3221999 3221999 G A HTT Missense_Mutation p.V2445I 0.22 benign(0.012) TCGA-55-6969-01 4 38775675 38775675 C A TLR10 Nonsense_Mutation p.E513* 0.17 TCGA-55-6969-01 4 38775676 38775676 C A TLR10 Missense_Mutation p.Q512H 0.18 deleterious(0.03) possibly_damaging(0.868) TCGA-55-6969-01 4 46252198 46252198 A G GABRA2 3'UTR 0.20 TCGA-55-6969-01 4 47765540 47765540 G C CORIN Missense_Mutation p.P158R 0.05 deleterious(0) possibly_damaging(0.58) TCGA-55-6969-01 4 69101984 69101984 T C TMPRSS11B Missense_Mutation p.E42G 0.35 tolerated(0.5) benign(0.001) TCGA-55-6969-01 5 112849745 112849745 C T YTHDC2 Silent p.I51I 0.39 TCGA-55-6969-01 5 115152106 115152106 C A CDO1 5'UTR 0.22 TCGA-55-6969-01 5 115782644 115782644 A T SEMA6A Missense_Mutation p.Y920N 0.14 tolerated(0.05) probably_damaging(0.914) TCGA-55-6969-01 5 115822567 115822567 G T SEMA6A Silent p.R280R 0.22 TCGA-55-6969-01 5 140182384 140182384 G A PCDHA3 Silent p.Q534Q 0.10 TCGA-55-6969-01 5 140182385 140182385 G T PCDHA3 Missense_Mutation p.V535L 0.10 tolerated_low_confidence(0.07) possibly_damaging(0.801) TCGA-55-6969-01 5 140531579 140531579 G A PCDHB6 Missense_Mutation p.G581S 0.22 deleterious(0) probably_damaging(0.996) TCGA-55-6969-01 5 140552521 140552521 G T PCDHB7 Silent p.V35V 0.21 TCGA-55-6969-01 5 143543795 143543795 G C YIPF5 Missense_Mutation p.I103M 0.19 deleterious(0.03) probably_damaging(0.98) TCGA-55-6969-01 5 148521551 148521551 G A ABLIM3 5'UTR 0.12 TCGA-55-6969-01 5 154191138 154191138 A G LARP1 Missense_Mutation p.I930V 0.19 tolerated(0.66) probably_damaging(0.99) TCGA-55-6969-01 5 167182006 167182006 T G TENM2 Intron 0.13 TCGA-55-6969-01 5 169021607 169021607 G C SPDL1 Missense_Mutation p.Q271H 0.09 deleterious(0) probably_damaging(0.961) TCGA-55-6969-01 5 176024906 176024906 C A GPRIN1 Missense_Mutation p.G644W 0.24 deleterious(0) probably_damaging(1) TCGA-55-6969-01 5 176295216 176295216 C A UNC5A Nonsense_Mutation p.C126* 0.19 TCGA-55-6969-01 5 19473465 19473465 C A CDH18 Missense_Mutation p.G748V 0.10 tolerated(0.06) probably_damaging(1) TCGA-55-6969-01 5 24491734 24491734 G A CDH10 Silent p.L609L 0.10 TCGA-55-6969-01 5 31448686 31448686 T C DROSHA Silent p.S950S 0.05 TCGA-55-6969-01 5 31511174 31511174 T A DROSHA Missense_Mutation p.E467V 0.08 tolerated(0.08) benign(0.05) TCGA-55-6969-01 5 33938224 33938224 A T RXFP3 Missense_Mutation p.Y460F 0.09 tolerated_low_confidence(0.3) benign(0.043) TCGA-55-6969-01 5 39383078 39383078 G C DAB2 Missense_Mutation p.S328C 0.04 tolerated(0.09) benign(0.008) TCGA-55-6969-01 5 52240831 52240831 C G ITGA1 Missense_Mutation p.S1115C 0.05 deleterious(0.03) benign(0.443) TCGA-55-6969-01 5 54405942 54405942 G T GZMA Missense_Mutation p.G241C 0.31 deleterious(0) probably_damaging(0.914) TCGA-55-6969-01 5 55094310 55094310 G T DDX4 Missense_Mutation p.G509V 0.10 deleterious(0) probably_damaging(0.998) TCGA-55-6969-01 5 70922501 70922501 G C MCCC2 Missense_Mutation p.G220A 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.767) TCGA-55-6969-01 5 75621369 75621369 G T SV2C Missense_Mutation p.M727I 0.17 deleterious(0.01) probably_damaging(0.985) TCGA-55-6969-01 5 76029214 76029214 C A F2R Nonsense_Mutation p.C388* 0.22 TCGA-55-6969-01 5 76607860 76607860 G C PDE8B Silent p.L127L 0.05 TCGA-55-6969-01 5 78301229 78301229 G A DMGDH Missense_Mutation p.P751L 0.21 deleterious(0.03) possibly_damaging(0.461) TCGA-55-6969-01 5 82817085 82817085 T C VCAN Missense_Mutation p.V987A 0.22 tolerated(0.61) benign(0.009) TCGA-55-6969-01 6 10529521 10529521 T C GCNT2 Missense_Mutation p.V126A 0.18 deleterious(0) possibly_damaging(0.755) TCGA-55-6969-01 6 10961580 10961580 G C SYCP2L Missense_Mutation p.E766D 0.10 deleterious(0.01) possibly_damaging(0.654) TCGA-55-6969-01 6 129905144 129905144 G A ARHGAP18 Silent p.L609L 0.21 TCGA-55-6969-01 6 133004457 133004457 G T VNN1 Nonsense_Mutation p.S455* 0.24 TCGA-55-6969-01 6 138610962 138610962 A G KIAA1244 Silent p.L968L 0.26 TCGA-55-6969-01 6 151687288 151687288 C G ZBTB2 Missense_Mutation p.D305H 0.22 deleterious(0.01) possibly_damaging(0.674) TCGA-55-6969-01 6 160484449 160484449 G T IGF2R Missense_Mutation p.D1225Y 0.12 deleterious(0.01) benign(0.078) TCGA-55-6969-01 6 170626880 170626880 C T FAM120B Silent p.P134P 0.15 TCGA-55-6969-01 6 29429911 29429911 T C OR2H1 Missense_Mutation p.V122A 0.09 tolerated(0.47) benign(0.217) TCGA-55-6969-01 6 31777894 31777894 C A HSPA1L Missense_Mutation p.G619V 0.26 tolerated_low_confidence(0.07) benign(0.193) TCGA-55-6969-01 6 32261152 32261152 G C C6orf10 Missense_Mutation p.A433G 0.21 deleterious(0.02) probably_damaging(0.986) TCGA-55-6969-01 6 35438117 35438118 - A RPL10A Frame_Shift_Ins p.M159Nfs*20 0.12 TCGA-55-6969-01 6 39271737 39271737 C A KCNK17 Silent p.V228V 0.11 TCGA-55-6969-01 6 40359793 40359793 C G LRFN2 Silent p.T753T 0.06 TCGA-55-6969-01 6 46801135 46801135 G T MEP1A Missense_Mutation p.S490I 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-6969-01 6 47846209 47846209 T A PTCHD4 Missense_Mutation p.T791S 0.11 deleterious(0.03) benign(0.122) TCGA-55-6969-01 6 57398175 57398175 A T PRIM2 Missense_Mutation p.K293I 0.12 deleterious(0.02) benign(0.272) TCGA-55-6969-01 6 90661400 90661400 A T BACH2 Missense_Mutation p.V142E 0.24 tolerated(0.15) benign(0.265) TCGA-55-6969-01 7 100679896 100679896 T G MUC17 Silent p.T1733T 0.07 TCGA-55-6969-01 7 107616205 107616205 T G LAMB1 Missense_Mutation p.N373T 0.07 deleterious(0.03) benign(0.201) TCGA-55-6969-01 7 107746314 107746314 T A LAMB4 Missense_Mutation p.E273V 0.35 deleterious(0) possibly_damaging(0.46) TCGA-55-6969-01 7 112461743 112461743 T C C7orf60 3'UTR 0.44 TCGA-55-6969-01 7 117432096 117432096 C G CTTNBP2 Missense_Mutation p.G385A 0.25 tolerated(0.08) possibly_damaging(0.905) TCGA-55-6969-01 7 127223156 127223156 T A GCC1 Missense_Mutation p.S414C 0.11 deleterious(0.01) probably_damaging(0.962) TCGA-55-6969-01 7 128626910 128626910 T A TNPO3 Missense_Mutation p.K521N 0.30 tolerated(0.57) benign(0.002) TCGA-55-6969-01 7 130023322 130023322 T C CPA1 Missense_Mutation p.F192L 0.31 tolerated(1) benign(0.284) TCGA-55-6969-01 7 131833308 131833308 G T PLXNA4 Missense_Mutation p.H1586Q 0.08 deleterious(0) possibly_damaging(0.885) TCGA-55-6969-01 7 140302057 140302057 C T DENND2A Silent p.K47K 0.08 TCGA-55-6969-01 7 142625300 142625300 C A TRPV5 Missense_Mutation p.R264S 0.15 deleterious(0) benign(0.044) TCGA-55-6969-01 7 142636718 142636718 C A C7orf34 Silent p.S25S 0.32 TCGA-55-6969-01 7 142650930 142650930 C T KEL Missense_Mutation p.M346I 0.07 deleterious(0.01) probably_damaging(0.943) TCGA-55-6969-01 7 143028407 143028407 C A CLCN1 Silent p.I354I 0.32 TCGA-55-6969-01 7 143657426 143657426 C A OR2F1 Missense_Mutation p.D121E 0.28 deleterious(0) probably_damaging(0.993) TCGA-55-6969-01 7 15458203 15458203 G C AGMO Missense_Mutation p.Q197E 0.12 deleterious(0) probably_damaging(0.998) TCGA-55-6969-01 7 23793982 23793982 A T STK31 Silent p.I394I 0.23 TCGA-55-6969-01 7 26411519 26411519 T A SNX10 Silent p.I130I 0.13 TCGA-55-6969-01 7 35930323 35930323 T C SEPT7 Silent p.Y307Y 0.13 TCGA-55-6969-01 7 43503287 43503287 A G HECW1 Missense_Mutation p.T894A 0.11 deleterious(0.04) benign(0.005) TCGA-55-6969-01 7 54636714 54636714 C G VSTM2A Missense_Mutation p.A216G 0.41 deleterious_low_confidence(0.03) benign(0.016) TCGA-55-6969-01 7 70880979 70880979 G C WBSCR17 Missense_Mutation p.E232Q 0.12 tolerated(0.5) possibly_damaging(0.598) TCGA-55-6969-01 7 84751212 84751212 A G SEMA3D 5'UTR 0.10 TCGA-55-6969-01 7 87145854 87145854 C A ABCB1 Missense_Mutation p.D1019Y 0.24 deleterious(0) probably_damaging(0.921) TCGA-55-6969-01 7 87199518 87199518 A T ABCB1 Missense_Mutation p.F103Y 0.23 tolerated(1) benign(0.003) TCGA-55-6969-01 7 92763404 92763404 C A SAMD9L Silent p.V627V 0.33 TCGA-55-6969-01 7 94750059 94750059 G C PPP1R9A Missense_Mutation p.G522R 0.07 deleterious(0) probably_damaging(1) TCGA-55-6969-01 7 97616377 97616377 C A OCM2 Missense_Mutation p.G96W 0.15 deleterious(0) probably_damaging(1) TCGA-55-6969-01 7 99274120 99274120 G T CYP3A5 Intron 0.31 TCGA-55-6969-01 7 99277499 99277499 C T CYP3A5 Silent p.L7L 0.19 TCGA-55-6969-01 7 99565997 99565997 C A AZGP1 Nonsense_Mutation p.G132* 0.26 TCGA-55-6969-01 8 106813565 106813565 G A ZFPM2 Missense_Mutation p.E419K 0.10 tolerated(0.17) benign(0.033) TCGA-55-6969-01 8 113249558 113249558 G T CSMD3 Silent p.A3496A 0.50 TCGA-55-6969-01 8 12600764 12600764 T C LONRF1 Missense_Mutation p.Y250C 0.20 tolerated(0.06) benign(0.028) TCGA-55-6969-01 8 12950276 12950276 G T DLC1 Missense_Mutation p.D1195E 0.20 deleterious(0) probably_damaging(0.999) TCGA-55-6969-01 8 133053916 133053916 T A OC90 Missense_Mutation p.Q67L 0.43 deleterious(0) possibly_damaging(0.888) TCGA-55-6969-01 8 22021573 22021574 GT - SFTPC Splice_Site 0.28 TCGA-55-6969-01 8 22275274 22275274 G T SLC39A14 Missense_Mutation p.G420C 0.13 deleterious(0.05) probably_damaging(1) TCGA-55-6969-01 8 30701510 30701510 C T TEX15 Nonsense_Mutation p.W1675* 0.07 TCGA-55-6969-01 8 37691583 37691583 C T GPR124 Silent p.I515I 0.25 TCGA-55-6969-01 8 40438748 40438748 T A ZMAT4 Missense_Mutation p.S204C 0.34 tolerated(0.05) possibly_damaging(0.796) TCGA-55-6969-01 8 42694370 42694370 C T THAP1 Missense_Mutation p.A76T 0.09 deleterious(0.01) possibly_damaging(0.905) TCGA-55-6969-01 8 42977597 42977597 G T POMK Missense_Mutation p.K210N 0.17 deleterious(0) probably_damaging(0.998) TCGA-55-6969-01 8 52325810 52325810 C G PXDNL Missense_Mutation p.G602R 0.15 tolerated(0.57) benign(0.022) TCGA-55-6969-01 8 61734669 61734669 G T CHD7 Missense_Mutation p.E974D 0.26 probably_damaging(0.987) TCGA-55-6969-01 8 67341264 67341264 C A RRS1 5'UTR 0.40 TCGA-55-6969-01 8 70978559 70978559 C A PRDM14 Missense_Mutation p.W365L 0.40 deleterious(0) probably_damaging(0.998) TCGA-55-6969-01 8 72756001 72756001 G C MSC Missense_Mutation p.P138R 0.11 deleterious(0) probably_damaging(1) TCGA-55-6969-01 8 77895673 77895673 C A PEX2 Nonsense_Mutation p.G248* 0.33 TCGA-55-6969-01 8 89086839 89086839 A G MMP16 Missense_Mutation p.F406L 0.08 deleterious(0.01) benign(0.139) TCGA-55-6969-01 8 92007983 92007983 G A TMEM55A Silent p.L232L 0.43 TCGA-55-6969-01 8 9609305 9609305 G C TNKS Missense_Mutation p.A1007P 0.08 tolerated(0.29) benign(0.296) TCGA-55-6969-01 8 99140740 99140740 G T POP1 Missense_Mutation p.R153I 0.39 deleterious(0) probably_damaging(0.985) TCGA-55-6969-01 9 104432850 104432850 C G GRIN3A Missense_Mutation p.G615A 0.21 deleterious(0) probably_damaging(1) TCGA-55-6969-01 9 107298307 107298307 C A OR13C3 Missense_Mutation p.G263V 0.25 deleterious(0) probably_damaging(0.99) TCGA-55-6969-01 9 107298308 107298308 C G OR13C3 Missense_Mutation p.G263R 0.26 deleterious(0) possibly_damaging(0.533) TCGA-55-6969-01 9 111976014 111976014 C A EPB41L4B Missense_Mutation p.G573V 0.26 deleterious(0.04) benign(0.19) TCGA-55-6969-01 9 120470844 120470844 G T TLR4 Missense_Mutation p.V33F 0.22 tolerated(0.13) benign(0.026) TCGA-55-6969-01 9 121929393 121929393 T C BRINP1 Missense_Mutation p.Q752R 0.07 tolerated(0.38) possibly_damaging(0.775) TCGA-55-6969-01 9 130548455 130548455 T G CDK9 Missense_Mutation p.C10G 0.22 deleterious(0.01) benign(0.021) TCGA-55-6969-01 9 132837961 132837961 A T GPR107 Missense_Mutation p.K63M 0.20 deleterious(0.01) possibly_damaging(0.832) TCGA-55-6969-01 9 135522351 135522351 C A DDX31 Silent p.A459A 0.28 TCGA-55-6969-01 9 138714142 138714142 T G CAMSAP1 Missense_Mutation p.S789R 0.27 deleterious(0) probably_damaging(0.988) TCGA-55-6969-01 9 18707001 18707001 T C ADAMTSL1 Missense_Mutation p.W611R 0.12 deleterious(0) probably_damaging(0.973) TCGA-55-6969-01 9 21350513 21350513 T A IFNA6 Missense_Mutation p.Q125L 0.11 deleterious(0.02) possibly_damaging(0.64) TCGA-55-6969-01 9 43625267 43625267 C G SPATA31A6 Missense_Mutation p.Q1140H 0.24 tolerated(0.12) probably_damaging(0.953) TCGA-55-6969-01 9 8331720 8331720 G C PTPRD Missense_Mutation p.T1799R 0.06 deleterious(0) probably_damaging(0.998) TCGA-55-6969-01 X 107169959 107169959 G C MID2 Missense_Mutation p.A622P 0.30 tolerated(0.28) possibly_damaging(0.685) TCGA-55-6969-01 X 119410800 119410800 G TA TMEM255A Frame_Shift_Ins p.I230Nfs*18 0.32 TCGA-55-6969-01 X 123654437 123654437 A T TENM1 Silent p.L1077L 0.20 TCGA-55-6969-01 X 12516808 12516808 G C FRMPD4 Silent p.T17T 0.40 TCGA-55-6969-01 X 12735777 12735777 C - FRMPD4 Frame_Shift_Del p.A947Qfs*130 0.10 TCGA-55-6969-01 X 12937314 12937314 G A TLR8 Missense_Mutation p.R52H 0.57 deleterious(0.02) benign(0.363) TCGA-55-6969-01 X 145078238 145078238 G C MIR892A RNA 0.38 TCGA-55-6969-01 X 151900415 151900415 G T MAGEA12 Missense_Mutation p.P129Q 0.17 deleterious(0.02) benign(0.381) TCGA-55-6969-01 X 153693806 153693806 G T PLXNA3 Missense_Mutation p.D762Y 0.45 deleterious(0.01) possibly_damaging(0.885) TCGA-55-6969-01 X 26211992 26211992 G T MAGEB6 Missense_Mutation p.R10L 0.42 deleterious(0) benign(0.38) TCGA-55-6969-01 X 49033264 49033264 C G PRICKLE3 Missense_Mutation p.E415Q 0.17 tolerated(0.31) benign(0.004) TCGA-55-6969-01 X 54319419 54319419 C A WNK3 Missense_Mutation p.G647C 0.23 tolerated(0.09) possibly_damaging(0.566) TCGA-55-6969-01 X 54783877 54783877 G C ITIH6 Missense_Mutation p.P877R 0.29 tolerated(0.15) benign(0.426) TCGA-55-6969-01 X 64708913 64708913 C A ZC3H12B Missense_Mutation p.R78S 0.27 deleterious(0) possibly_damaging(0.45) TCGA-55-6969-01 X 64722999 64722999 C A ZC3H12B Silent p.I807I 0.26 TCGA-55-6969-01 X 69283039 69283039 T A OTUD6A Missense_Mutation p.L222Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-55-6969-01 X 71358622 71358623 - A NHSL2 Frame_Shift_Ins p.N409Kfs*5 0.38 TCGA-55-6969-01 X 86069788 86069788 G T DACH2 Missense_Mutation p.Q545H 0.42 tolerated(0.16) benign(0.012) TCGA-55-6969-01 X 99597071 99597071 C A PCDH19 Missense_Mutation p.S893I 0.27 deleterious(0) benign(0.115) TCGA-55-6970-01 10 104592307 104592307 G A CYP17A1 Missense_Mutation p.A367V 0.22 deleterious(0) possibly_damaging(0.828) TCGA-55-6970-01 10 108337311 108337311 C A SORCS1 Intron 0.21 TCGA-55-6970-01 10 115891846 115891846 C A C10orf118 Nonsense_Mutation p.E585* 0.32 TCGA-55-6970-01 10 124596450 124596450 C A CUZD1 Silent p.S238S 0.24 TCGA-55-6970-01 10 16553053 16553053 T C PTER Missense_Mutation p.L283P 0.32 tolerated(0.19) possibly_damaging(0.718) TCGA-55-6970-01 10 27702277 27702277 G T PTCHD3 Missense_Mutation p.F301L 0.23 tolerated(1) benign(0.002) TCGA-55-6970-01 10 64974626 64974626 C T JMJD1C Nonsense_Mutation p.W434* 0.20 TCGA-55-6970-01 10 75198004 75198004 T A PPP3CB Missense_Mutation p.Q525L 0.16 deleterious_low_confidence(0.01) benign(0.007) TCGA-55-6970-01 10 90490869 90490869 G A LIPK Missense_Mutation p.S118N 0.27 deleterious(0.02) possibly_damaging(0.879) TCGA-55-6970-01 10 93683806 93683806 G T BTAF1 5'UTR 0.19 TCGA-55-6970-01 11 114450953 114450953 T C NXPE4 Missense_Mutation p.T334A 0.28 tolerated(0.29) benign(0) TCGA-55-6970-01 11 124412733 124412733 G A OR8B12 Missense_Mutation p.S273F 0.31 tolerated_low_confidence(0.06) benign(0.25) TCGA-55-6970-01 11 55659190 55659190 C G TRIM51 3'UTR 0.48 TCGA-55-6970-01 11 58170070 58170070 C T OR5B3 Missense_Mutation p.M271I 0.38 tolerated_low_confidence(1) benign(0.004) TCGA-55-6970-01 11 6220734 6220734 C A OR52W1 Missense_Mutation p.P94H 0.36 tolerated(0.52) probably_damaging(0.95) TCGA-55-6970-01 11 68030132 68030132 C A C11orf24 Missense_Mutation p.A111S 0.43 tolerated(0.65) unknown(0) TCGA-55-6970-01 11 6807054 6807054 C A OR2AG1 Silent p.P262P 0.32 TCGA-55-6970-01 11 6807055 6807055 A G OR2AG1 Missense_Mutation p.S263G 0.32 tolerated(0.07) benign(0.17) TCGA-55-6970-01 11 6816318 6816318 C T OR6A2 Missense_Mutation p.A208T 0.29 deleterious(0) probably_damaging(1) TCGA-55-6970-01 12 14993823 14993823 T C ART4 Missense_Mutation p.T137A 0.39 tolerated(0.33) benign(0.005) TCGA-55-6970-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.29 deleterious(0) possibly_damaging(0.479) TCGA-55-6970-01 12 50479969 50479969 G T SMARCD1 Missense_Mutation p.R68L 0.35 tolerated_low_confidence(0.05) benign(0.002) TCGA-55-6970-01 12 50492536 50492536 C T SMARCD1 Nonsense_Mutation p.R478* 0.33 TCGA-55-6970-01 12 51759270 51759270 C G GALNT6 Missense_Mutation p.R253P 0.30 deleterious(0) probably_damaging(1) TCGA-55-6970-01 12 6672840 6672840 G C NOP2 Missense_Mutation p.L243V 0.26 tolerated(0.06) benign(0.263) TCGA-55-6970-01 12 7556223 7556223 G T CD163L1 Missense_Mutation p.T439N 0.44 tolerated(0.4) benign(0.407) TCGA-55-6970-01 13 110839649 110839649 C A COL4A1 Missense_Mutation p.G522C 0.33 probably_damaging(0.995) TCGA-55-6970-01 13 25743891 25743891 G A AMER2 Missense_Mutation p.P623S 0.33 tolerated(0.26) benign(0.26) TCGA-55-6970-01 13 51805511 51805511 G T FAM124A Silent p.T32T 0.28 TCGA-55-6970-01 13 58299398 58299398 G T PCDH17 Silent p.R1150R 0.38 TCGA-55-6970-01 14 100934431 100934431 G T WDR25 Missense_Mutation p.R299L 0.48 tolerated(0.1) possibly_damaging(0.858) TCGA-55-6970-01 14 102481660 102481660 C A DYNC1H1 Silent p.P2411P 0.50 TCGA-55-6970-01 14 107170173 107170173 C A IGHV1-69 Missense_Mutation p.V37L 0.34 tolerated(0.14) benign(0.433) TCGA-55-6970-01 14 22994680 22994680 G T TRAJ18 Missense_Mutation p.W21L 0.40 unknown(0) TCGA-55-6970-01 14 24731047 24731047 C A TGM1 Missense_Mutation p.R121L 0.30 deleterious(0.05) possibly_damaging(0.477) TCGA-55-6970-01 14 70634693 70634693 G T SLC8A3 Silent p.L149L 0.30 TCGA-55-6970-01 14 72165763 72165763 G C SIPA1L1 Missense_Mutation p.R1147P 0.25 deleterious(0.02) possibly_damaging(0.805) TCGA-55-6970-01 14 74764696 74764696 C T ABCD4 Missense_Mutation p.R121H 0.15 tolerated(0.25) benign(0.013) TCGA-55-6970-01 14 78140100 78140100 C A ALKBH1 3'UTR 0.54 TCGA-55-6970-01 15 24923786 24923786 A T NPAP1 Silent p.P924P 0.26 TCGA-55-6970-01 15 34064229 34064229 G A RYR3 Silent p.K2975K 0.43 TCGA-55-6970-01 15 59971852 59971852 C A BNIP2 Silent p.G199G 0.22 TCGA-55-6970-01 15 72637811 72637811 G A HEXA Missense_Mutation p.S501L 0.32 tolerated(0.21) benign(0.181) TCGA-55-6970-01 15 76205553 76205553 A G FBXO22 Missense_Mutation p.I97V 0.22 tolerated(1) benign(0.05) TCGA-55-6970-01 16 66436571 66436571 C T CDH5 Silent p.I618I 0.33 TCGA-55-6970-01 16 830154 830154 G A MSLNL Nonsense_Mutation p.Q283* 0.20 TCGA-55-6970-01 17 38318122 38318122 C T CASC3 Silent p.T138T 0.10 TCGA-55-6970-01 17 56389964 56389964 G A BZRAP1 Missense_Mutation p.P740S 0.42 tolerated(0.36) benign(0.375) TCGA-55-6970-01 17 56573570 56573570 C A MTMR4 Nonsense_Mutation p.E645* 0.43 TCGA-55-6970-01 17 61482500 61482500 G T TANC2 Nonsense_Mutation p.G1043* 0.42 TCGA-55-6970-01 18 21897289 21897289 A T OSBPL1A Splice_Site p.X269_splice 0.24 TCGA-55-6970-01 18 52265217 52265217 G C DYNAP Silent p.V158V 0.15 TCGA-55-6970-01 18 59821870 59821870 G A PIGN Missense_Mutation p.H153Y 0.27 deleterious(0.01) benign(0.072) TCGA-55-6970-01 18 61328359 61328359 G A SERPINB3 Missense_Mutation p.P31L 0.28 deleterious(0) probably_damaging(1) TCGA-55-6970-01 18 73139529 73139529 C A SMIM21 5'UTR 0.23 TCGA-55-6970-01 19 10602612 10602612 G AA KEAP1 Frame_Shift_Ins p.K323* 0.35 TCGA-55-6970-01 19 1221226 1221226 C - STK11 Frame_Shift_Del p.T250Rfs*37 0.34 TCGA-55-6970-01 19 21992268 21992268 G A ZNF43 Nonsense_Mutation p.Q191* 0.44 TCGA-55-6970-01 19 22939436 22939436 C T ZNF99 3'Flank 0.42 TCGA-55-6970-01 19 35716023 35716023 C T FAM187B Missense_Mutation p.G272D 0.29 deleterious(0) probably_damaging(0.999) TCGA-55-6970-01 19 36278085 36278085 C T ARHGAP33 Missense_Mutation p.S712L 0.11 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-55-6970-01 19 37733742 37733742 G T ZNF383 Nonsense_Mutation p.E202* 0.46 TCGA-55-6970-01 19 38980864 38980864 C T RYR1 Missense_Mutation p.A1988V 0.15 possibly_damaging(0.579) TCGA-55-6970-01 19 42392303 42392303 G T ARHGEF1 Missense_Mutation p.S37I 0.24 deleterious(0) probably_damaging(0.997) TCGA-55-6970-01 19 45412386 45412386 G T APOE Missense_Mutation p.R278L 0.50 deleterious(0.01) probably_damaging(0.989) TCGA-55-6970-01 19 50549674 50549674 T A ZNF473 Missense_Mutation p.S658R 0.44 tolerated(0.31) benign(0.137) TCGA-55-6970-01 19 57133270 57133270 G T ZNF71 Missense_Mutation p.Q205H 0.22 deleterious(0.02) benign(0.408) TCGA-55-6970-01 19 57328601 57328601 C A PEG3 Silent p.S403S 0.33 TCGA-55-6970-01 19 9087226 9087226 C A MUC16 Missense_Mutation p.G1530V 0.37 unknown(0) TCGA-55-6970-01 1 120342457 120342457 G C REG4 Missense_Mutation p.A65G 0.06 deleterious(0.03) benign(0.188) TCGA-55-6970-01 1 12640467 12640467 T C DHRS3 Intron 0.20 TCGA-55-6970-01 1 152883939 152883939 C A IVL Missense_Mutation p.Q556K 0.61 tolerated_low_confidence(0.34) unknown(0) TCGA-55-6970-01 1 153270572 153270572 C A PGLYRP3 Missense_Mutation p.D296Y 0.53 deleterious(0) possibly_damaging(0.806) TCGA-55-6970-01 1 158623215 158623215 C A SPTA1 Missense_Mutation p.D1013Y 0.73 deleterious(0) probably_damaging(0.977) TCGA-55-6970-01 1 158736189 158736189 G A OR6N1 Missense_Mutation p.S95F 0.07 tolerated(0.34) benign(0.125) TCGA-55-6970-01 1 161683078 161683078 G T FCRLA Missense_Mutation p.D353Y 0.28 deleterious(0.01) probably_damaging(0.977) TCGA-55-6970-01 1 177909851 177909851 T A SEC16B Splice_Site p.X675_splice 0.65 TCGA-55-6970-01 1 179587789 179587789 G T TDRD5 Missense_Mutation p.S296I 0.49 deleterious(0) possibly_damaging(0.888) TCGA-55-6970-01 1 210977509 210977509 C T KCNH1 Splice_Site p.X488_splice 0.48 TCGA-55-6970-01 1 228431083 228431083 G T OBSCN Missense_Mutation p.Q1135H 0.30 possibly_damaging(0.895) TCGA-55-6970-01 1 233136268 233136268 C T PCNXL2 Missense_Mutation p.C1704Y 0.32 deleterious(0) possibly_damaging(0.474) TCGA-55-6970-01 1 248112595 248112595 G - OR2L8 Frame_Shift_Del p.S147Lfs*4 0.52 TCGA-55-6970-01 1 248525924 248525924 G A OR2T4 Missense_Mutation p.E348K 0.09 tolerated_low_confidence(1) benign(0) TCGA-55-6970-01 1 248845249 248845249 G T OR14I1 Missense_Mutation p.D119E 0.60 deleterious(0) probably_damaging(0.993) TCGA-55-6970-01 1 248845465 248845465 G T OR14I1 Silent p.I47I 0.26 TCGA-55-6970-01 1 26515397 26515397 C T CNKSR1 Missense_Mutation p.L609F 0.40 deleterious(0.01) probably_damaging(0.965) TCGA-55-6970-01 1 36492838 36492838 G C AGO3 Missense_Mutation p.K510N 0.08 deleterious(0.04) possibly_damaging(0.745) TCGA-55-6970-01 1 46654920 46654920 C A POMGNT1 Missense_Mutation p.G660V 0.36 benign(0) TCGA-55-6970-01 1 62916294 62916294 G C USP1 Missense_Mutation p.G667A 0.41 deleterious(0.01) probably_damaging(0.977) TCGA-55-6970-01 1 898548 898548 C T KLHL17 Missense_Mutation p.R368C 0.33 deleterious(0.02) possibly_damaging(0.724) TCGA-55-6970-01 20 17602100 17602100 C A RRBP1 Intron 0.20 TCGA-55-6970-01 20 25257281 25257281 G A PYGB Splice_Site p.X221_splice 0.18 TCGA-55-6970-01 20 44522627 44522627 G A CTSA Silent p.R249R 0.19 TCGA-55-6970-01 20 61637730 61637730 T A BHLHE23 Missense_Mutation p.N117Y 0.26 deleterious(0) probably_damaging(0.99) TCGA-55-6970-01 21 16338524 16338524 C A NRIP1 Missense_Mutation p.G664C 0.21 deleterious(0.01) possibly_damaging(0.873) TCGA-55-6970-01 21 31913860 31913860 T G KRTAP19-6 3'UTR 0.20 TCGA-55-6970-01 21 32624131 32624131 C T TIAM1 Silent p.L446L 0.21 TCGA-55-6970-01 21 41710051 41710051 T C DSCAM Missense_Mutation p.Q587R 0.19 tolerated(0.29) benign(0.072) TCGA-55-6970-01 22 25601313 25601313 C T CRYBB3 Missense_Mutation p.R152C 0.27 deleterious(0) possibly_damaging(0.885) TCGA-55-6970-01 22 40139897 40139897 G T ENTHD1 Missense_Mutation p.D537E 0.45 tolerated(0.07) benign(0.007) TCGA-55-6970-01 22 44553883 44553883 G T PARVB Missense_Mutation p.V322F 0.34 deleterious(0) possibly_damaging(0.902) TCGA-55-6970-01 22 50987893 50987893 C A KLHDC7B Missense_Mutation p.P433Q 0.37 deleterious(0) probably_damaging(0.993) TCGA-55-6970-01 2 103141571 103141571 G A SLC9A4 Missense_Mutation p.R636K 0.24 deleterious(0.02) benign(0.015) TCGA-55-6970-01 2 108863677 108863677 C A SULT1C3 Silent p.P9P 0.34 TCGA-55-6970-01 2 112944812 112944812 C T FBLN7 Missense_Mutation p.T350M 0.05 deleterious(0.01) probably_damaging(0.981) TCGA-55-6970-01 2 125285017 125285017 T C CNTNAP5 Missense_Mutation p.C544R 0.25 deleterious(0) probably_damaging(0.999) TCGA-55-6970-01 2 141081510 141081510 C G LRP1B Missense_Mutation p.D4156H 0.18 benign(0.058) TCGA-55-6970-01 2 141253245 141253245 C A LRP1B Missense_Mutation p.G2975C 0.22 probably_damaging(0.965) TCGA-55-6970-01 2 141625201 141625201 G T LRP1B Missense_Mutation p.P1513T 0.22 benign(0.004) TCGA-55-6970-01 2 148733486 148733486 T A ORC4 Silent p.T14T 0.11 TCGA-55-6970-01 2 15523386 15523386 T C NBAS Missense_Mutation p.M1105V 0.20 tolerated(0.05) benign(0.006) TCGA-55-6970-01 2 160604822 160604822 G T MARCH7 Missense_Mutation p.A341S 0.20 tolerated(0.75) benign(0.002) TCGA-55-6970-01 2 187626990 187626990 G C FAM171B Missense_Mutation p.V641L 0.20 tolerated(0.07) possibly_damaging(0.566) TCGA-55-6970-01 2 198498578 198498578 A T RFTN2 Nonsense_Mutation p.C194* 0.25 TCGA-55-6970-01 2 200213481 200213481 C T SATB2 Silent p.L372L 0.16 TCGA-55-6970-01 2 207012264 207012264 C G NDUFS1 Missense_Mutation p.R195P 0.29 deleterious(0) probably_damaging(1) TCGA-55-6970-01 2 225658144 225658144 G A DOCK10 Missense_Mutation p.L1729F 0.08 deleterious(0) probably_damaging(0.999) TCGA-55-6970-01 2 225659622 225659622 G A DOCK10 Missense_Mutation p.H1710Y 0.11 deleterious(0.01) probably_damaging(0.995) TCGA-55-6970-01 2 25174272 25174272 C A DNAJC27 Missense_Mutation p.G227V 0.23 deleterious(0) probably_damaging(0.947) TCGA-55-6970-01 2 74040695 74040695 C A C2orf78 Missense_Mutation p.S63R 0.14 tolerated(0.16) benign(0.117) TCGA-55-6970-01 2 74129562 74129562 C G ACTG2 Missense_Mutation p.L68V 0.37 tolerated_low_confidence(0.05) benign(0.296) TCGA-55-6970-01 2 79386484 79386484 G T REG3A Silent p.S16S 0.18 TCGA-55-6970-01 2 80101282 80101282 G T CTNNA2 Silent p.T222T 0.18 TCGA-55-6970-01 2 80101283 80101283 G T CTNNA2 Missense_Mutation p.A223S 0.18 tolerated(0.41) benign(0.311) TCGA-55-6970-01 3 10401703 10401703 G T ATP2B2 Silent p.R588R 0.33 TCGA-55-6970-01 3 130095284 130095284 G T COL6A5 Missense_Mutation p.S91I 0.69 deleterious(0.03) benign(0.304) TCGA-55-6970-01 3 140167426 140167426 C A CLSTN2 Missense_Mutation p.L285M 0.32 deleterious(0) probably_damaging(0.988) TCGA-55-6970-01 3 154146739 154146739 C - GPR149 Frame_Shift_Del p.P223Rfs*82 0.24 TCGA-55-6970-01 3 170198532 170198532 G C SLC7A14 Silent p.T513T 0.37 TCGA-55-6970-01 3 184071086 184071086 T C CLCN2 Silent p.L660L 0.36 TCGA-55-6970-01 3 18457572 18457572 C A SATB1 Missense_Mutation p.A148S 0.30 deleterious(0.05) possibly_damaging(0.503) TCGA-55-6970-01 3 194390774 194390774 C A LSG1 Missense_Mutation p.A64S 0.26 tolerated(0.42) benign(0.041) TCGA-55-6970-01 3 37107762 37107762 G A LRRFIP2 Missense_Mutation p.L507F 0.08 deleterious(0) probably_damaging(1) TCGA-55-6970-01 3 39167856 39167856 G T TTC21A Missense_Mutation p.L507F 0.36 deleterious(0.02) benign(0.382) TCGA-55-6970-01 3 447414 447414 C G CHL1 3'UTR 0.48 TCGA-55-6970-01 3 44815917 44815917 C T KIF15 Missense_Mutation p.S17F 0.65 deleterious(0.02) benign(0.295) TCGA-55-6970-01 3 49569139 49569139 G C DAG1 Missense_Mutation p.G399R 0.37 deleterious(0.04) benign(0.385) TCGA-55-6970-01 3 57913021 57913021 A G SLMAP Splice_Site p.X782_splice 0.38 TCGA-55-6970-01 3 9477415 9477415 G T SETD5 Missense_Mutation p.G131V 0.42 deleterious(0) probably_damaging(0.999) TCGA-55-6970-01 4 100260735 100260735 T A ADH1C Missense_Mutation p.S368C 0.39 probably_damaging(1) TCGA-55-6970-01 4 123859322 123859322 G T SPATA5 Missense_Mutation p.C459F 0.39 deleterious(0.01) possibly_damaging(0.521) TCGA-55-6970-01 4 123859323 123859323 T A SPATA5 Nonsense_Mutation p.C459* 0.38 TCGA-55-6970-01 4 156136042 156136042 C T NPY2R Silent p.S317S 0.31 TCGA-55-6970-01 4 169377304 169377304 C A DDX60L Splice_Site p.X242_splice 0.36 TCGA-55-6970-01 4 62849295 62849295 C G LPHN3 Missense_Mutation p.D1002E 0.30 deleterious(0) probably_damaging(0.999) TCGA-55-6970-01 4 663834 663834 G A PDE6B Splice_Site p.X835_splice 0.39 TCGA-55-6970-01 5 102465308 102465308 C T PPIP5K2 Silent p.P5P 0.53 TCGA-55-6970-01 5 1323018 1323018 G T CLPTM1L Missense_Mutation p.S430Y 0.50 deleterious(0.02) probably_damaging(0.967) TCGA-55-6970-01 5 147204199 147204199 T A SPINK1 3'UTR 0.21 TCGA-55-6970-01 5 149574475 149574475 G T SLC6A7 Splice_Site p.X73_splice 0.22 TCGA-55-6970-01 5 154396339 154396339 C A KIF4B Silent p.R974R 0.18 TCGA-55-6970-01 5 159821008 159821008 T G C5orf54 Missense_Mutation p.E497A 0.05 deleterious(0.01) probably_damaging(0.993) TCGA-55-6970-01 5 160097648 160097648 C A ATP10B Missense_Mutation p.C166F 0.23 tolerated(0.72) possibly_damaging(0.812) TCGA-55-6970-01 5 176012970 176012970 C A CDHR2 Missense_Mutation p.T917N 0.19 tolerated(0.39) benign(0.003) TCGA-55-6970-01 5 26988295 26988295 C A CDH9 Missense_Mutation p.R49L 0.25 tolerated(0.22) benign(0.056) TCGA-55-6970-01 5 39316014 39316014 G T C9 Missense_Mutation p.P245T 0.22 deleterious(0.01) possibly_damaging(0.703) TCGA-55-6970-01 5 40955608 40955608 G T C7 Missense_Mutation p.A405S 0.48 tolerated(1) benign(0.001) TCGA-55-6970-01 5 45262540 45262540 T C HCN1 Missense_Mutation p.Y719C 0.51 tolerated_low_confidence(0.08) probably_damaging(0.99) TCGA-55-6970-01 5 54326372 54326372 T A GZMK Missense_Mutation p.V108D 0.38 deleterious(0) benign(0) TCGA-55-6970-01 5 76736805 76736805 C T WDR41 Missense_Mutation p.G239S 0.10 deleterious(0.01) probably_damaging(0.931) TCGA-55-6970-01 6 26368879 26368879 A G BTN3A2 Missense_Mutation p.M58V 0.20 tolerated(0.66) benign(0.403) TCGA-55-6970-01 6 27834657 27834657 C G HIST1H1B Missense_Mutation p.K217N 0.40 deleterious_low_confidence(0.04) unknown(0) TCGA-55-6970-01 6 34008365 34008365 G C GRM4 Silent p.G443G 0.33 TCGA-55-6970-01 6 42541664 42541664 C G UBR2 Missense_Mutation p.Q91E 0.28 tolerated(0.21) benign(0.002) TCGA-55-6970-01 7 127894809 127894809 G T LEP Missense_Mutation p.G166V 0.42 tolerated(0.27) possibly_damaging(0.86) TCGA-55-6970-01 7 142562336 142562336 G T EPHB6 Missense_Mutation p.G260C 0.35 deleterious(0) probably_damaging(0.95) TCGA-55-6970-01 7 143792935 143792935 C A OR2A12 Nonsense_Mutation p.C245* 0.40 TCGA-55-6970-01 7 1526614 1526614 A G INTS1 Missense_Mutation p.S924P 0.18 tolerated(0.19) benign(0.002) TCGA-55-6970-01 7 20668317 20668317 T C ABCB5 Missense_Mutation p.F39L 0.45 deleterious(0) possibly_damaging(0.869) TCGA-55-6970-01 7 2297100 2297100 G A SNX8 Missense_Mutation p.A345V 0.60 deleterious(0) possibly_damaging(0.611) TCGA-55-6970-01 7 44005995 44005995 C G POLR2J4 Splice_Site 0.41 TCGA-55-6970-01 7 48619942 48619942 G T ABCA13 Missense_Mutation p.R4826L 0.26 probably_damaging(0.976) TCGA-55-6970-01 8 120431548 120431548 G T NOV Missense_Mutation p.R247L 0.26 deleterious(0) probably_damaging(1) TCGA-55-6970-01 8 134237699 134237699 G T WISP1 Missense_Mutation p.C226F 0.20 deleterious(0) probably_damaging(0.972) TCGA-55-6970-01 8 139734315 139734315 G T COL22A1 Missense_Mutation p.D755E 0.50 unknown(0) TCGA-55-6970-01 8 144733134 144733134 G A ZNF623 Silent p.Q364Q 0.23 TCGA-55-6970-01 8 145694127 145694127 C T KIFC2 Silent p.A341A 0.23 TCGA-55-6970-01 8 35631947 35631947 C A UNC5D Missense_Mutation p.A870D 0.19 deleterious(0.01) probably_damaging(0.921) TCGA-55-6970-01 8 51571204 51571204 T C SNTG1 Missense_Mutation p.I340T 0.33 tolerated(0.4) benign(0.05) TCGA-55-6970-01 8 56699163 56699163 G T TGS1 Nonsense_Mutation p.E236* 0.24 TCGA-55-6970-01 9 138589378 138589378 A G SOHLH1 Silent p.P147P 0.12 TCGA-55-6970-01 9 33364014 33364014 A G NFX1 Silent p.L960L 0.34 TCGA-55-6970-01 9 74810477 74810477 C A GDA Missense_Mutation p.P62Q 0.12 tolerated(0.39) benign(0.011) TCGA-55-6970-01 X 118763453 118763453 G T SEPT6 Missense_Mutation p.R370S 0.23 tolerated(0.18) benign(0.103) TCGA-55-6970-01 X 119573053 119573053 C T LAMP2 Intron 0.09 TCGA-55-6970-01 X 131524889 131524889 C A MBNL3 Missense_Mutation p.A253S 0.34 tolerated(0.13) possibly_damaging(0.492) TCGA-55-6970-01 X 135095108 135095108 G T SLC9A6 Missense_Mutation p.V348L 0.28 tolerated(0.79) possibly_damaging(0.466) TCGA-55-6970-01 X 149013681 149013681 T A MAGEA8 Missense_Mutation p.I212N 0.29 deleterious(0) probably_damaging(0.998) TCGA-55-6970-01 X 149639102 149639102 G A MAMLD1 Silent p.P394P 0.28 TCGA-55-6970-01 X 151123374 151123374 G T GABRE Silent p.L440L 0.24 TCGA-55-6970-01 X 151358252 151358252 G A GABRA3 Missense_Mutation p.R365W 0.07 deleterious(0.01) probably_damaging(1) TCGA-55-6970-01 X 151870319 151870319 C - MAGEA6 3'UTR 0.24 TCGA-55-6970-01 X 153128982 153128982 C A L1CAM Missense_Mutation p.Q1160H 0.32 tolerated(0.2) probably_damaging(0.988) TCGA-55-6970-01 X 153178193 153178193 G T ARHGAP4 Missense_Mutation p.N541K 0.21 tolerated(0.08) benign(0.027) TCGA-55-6970-01 X 153229610 153229610 G T HCFC1 Silent p.A156A 0.32 TCGA-55-6970-01 X 154348318 154348318 C T BRCC3 Missense_Mutation p.P282S 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-55-6970-01 X 19443726 19443726 G C MAP3K15 Missense_Mutation p.S454R 0.23 deleterious(0.03) benign(0.226) TCGA-55-6970-01 X 30260721 30260721 C A MAGEB4 Missense_Mutation p.R157S 0.33 tolerated(0.31) probably_damaging(0.958) TCGA-55-6970-01 X 46359634 46359634 T A ZNF674 Missense_Mutation p.T464S 0.09 deleterious(0.03) probably_damaging(0.981) TCGA-55-6970-01 X 46359636 46359636 T A ZNF674 Missense_Mutation p.H463L 0.09 deleterious(0) probably_damaging(0.996) TCGA-55-6970-01 X 48324401 48324401 C T SLC38A5 Splice_Site p.X164_splice 0.32 TCGA-55-6970-01 X 49161404 49161404 G T GAGE10 Missense_Mutation p.M22I 0.17 tolerated(0.07) benign(0.11) TCGA-55-6970-01 X 51638238 51638238 C A MAGED1 Silent p.A101A 0.23 TCGA-55-6970-01 X 54837315 54837315 C T MAGED2 Missense_Mutation p.T200I 0.24 tolerated(0.15) benign(0.01) TCGA-55-6970-01 X 65824988 65824988 G T EDA2R Missense_Mutation p.H56Q 0.29 tolerated(0.13) probably_damaging(0.989) TCGA-55-6970-01 X 69516981 69516981 C A KIF4A Missense_Mutation p.F123L 0.25 deleterious(0.01) probably_damaging(0.96) TCGA-55-6970-01 X 70524814 70524814 G C ITGB1BP2 Splice_Site p.X273_splice 0.29 TCGA-55-6970-01 X 71428457 71428457 C A ERCC6L Nonsense_Mutation p.E54* 0.27 TCGA-55-6970-01 X 71838660 71838660 G A PHKA1 Nonsense_Mutation p.Q757* 0.25 TCGA-55-6970-01 X 73042602 73042602 C A XIST RNA 0.23 TCGA-55-6970-01 X 78010545 78010545 C A LPAR4 Missense_Mutation p.S60Y 0.32 deleterious(0) probably_damaging(0.961) TCGA-55-6970-01 X 84526494 84526494 G T ZNF711 Missense_Mutation p.C649F 0.26 deleterious(0) probably_damaging(1) TCGA-55-6970-01 X 9652091 9652091 C A TBL1X Missense_Mutation p.H74N 0.24 deleterious(0) probably_damaging(0.967) TCGA-55-6970-01 X 99663476 99663476 G A PCDH19 Silent p.A40A 0.23 TCGA-55-6971-01 10 100380391 100380391 G A HPSE2 Silent p.N391N 0.16 TCGA-55-6971-01 10 30317017 30317017 C G KIAA1462 Missense_Mutation p.R687T 0.22 deleterious(0) probably_damaging(0.964) TCGA-55-6971-01 10 70432756 70432756 G A TET1 Missense_Mutation p.S1593N 0.12 deleterious(0) benign(0.2) TCGA-55-6971-01 10 93608227 93608227 A T TNKS2 Nonsense_Mutation p.R816* 0.10 TCGA-55-6971-01 11 108117855 108117855 G C ATM Splice_Site p.X355_splice 0.15 TCGA-55-6971-01 11 26463564 26463564 G C ANO3 Missense_Mutation p.S49T 0.22 tolerated_low_confidence(0.34) benign(0.021) TCGA-55-6971-01 11 27141267 27141267 G T BBOX1 Silent p.V237V 0.12 TCGA-55-6971-01 11 46924362 46924362 G C LRP4 Missense_Mutation p.C57W 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-6971-01 11 55861302 55861302 C G OR8I2 Missense_Mutation p.I173M 0.12 deleterious(0) probably_damaging(0.992) TCGA-55-6971-01 12 120595667 120595667 C T GCN1L1 Missense_Mutation p.G1025R 0.22 benign(0) TCGA-55-6971-01 12 21358836 21358836 C A SLCO1B1 Missense_Mutation p.L456I 0.12 tolerated(0.11) benign(0.239) TCGA-55-6971-01 12 2693732 2693732 C T CACNA1C Missense_Mutation p.T763I 0.15 deleterious(0.01) probably_damaging(0.967) TCGA-55-6971-01 12 33592376 33592376 G A SYT10 Nonsense_Mutation p.Q28* 0.16 TCGA-55-6971-01 12 64038229 64038229 T A DPY19L2 Missense_Mutation p.N253Y 0.31 deleterious(0) probably_damaging(0.985) TCGA-55-6971-01 13 113832496 113832496 G C PCID2 3'UTR 0.17 TCGA-55-6971-01 14 101350989 101350989 C A RTL1 Missense_Mutation p.G46V 0.33 deleterious_low_confidence(0.02) benign(0.307) TCGA-55-6971-01 14 20215836 20215836 G T OR4Q3 Missense_Mutation p.G84W 0.23 tolerated(0.06) possibly_damaging(0.77) TCGA-55-6971-01 14 23847890 23847890 G T CMTM5 Intron 0.20 TCGA-55-6971-01 14 58831552 58831552 A G ARID4A Missense_Mutation p.I915M 0.24 tolerated_low_confidence(0.09) benign(0.088) TCGA-55-6971-01 15 22368719 22368719 C G OR4M2 Silent p.T48T 0.04 TCGA-55-6971-01 15 23330283 23330283 C T HERC2P2 RNA 0.42 TCGA-55-6971-01 15 37390313 37390313 G A MEIS2 Missense_Mutation p.P34S 0.20 tolerated(0.05) benign(0.011) TCGA-55-6971-01 16 2089996 2089996 A C NTHL1 Missense_Mutation p.C290G 0.22 deleterious(0) probably_damaging(0.998) TCGA-55-6971-01 16 70891750 70891750 G A HYDIN Silent p.F4051F 0.21 TCGA-55-6971-01 17 11656200 11656201 CC A DNAH9 Frame_Shift_Del p.P2221Tfs*10 0.24 TCGA-55-6971-01 17 29664869 29664869 G A NF1 Nonsense_Mutation p.W2225* 0.18 TCGA-55-6971-01 17 42929916 42929916 T A EFTUD2 Missense_Mutation p.Q859L 0.07 deleterious(0.03) possibly_damaging(0.752) TCGA-55-6971-01 17 55962708 55962708 T A CUEDC1 Missense_Mutation p.N73I 0.08 deleterious(0) probably_damaging(1) TCGA-55-6971-01 17 64800245 64800245 G T PRKCA 3'UTR 0.38 TCGA-55-6971-01 17 66985997 66985997 C T ABCA9 Silent p.K1304K 0.12 TCGA-55-6971-01 18 12420398 12420398 T A SLMO1 Missense_Mutation p.V36E 0.18 deleterious(0) probably_damaging(1) TCGA-55-6971-01 19 31767776 31767776 C A TSHZ3 Missense_Mutation p.V975F 0.29 deleterious(0) benign(0.257) TCGA-55-6971-01 19 40710443 40710443 G A MAP3K10 Silent p.E305E 0.12 TCGA-55-6971-01 19 44792062 44792062 T A ZNF235 Missense_Mutation p.H509L 0.04 deleterious(0) probably_damaging(1) TCGA-55-6971-01 19 51525889 51525889 T A KLK11 Missense_Mutation p.D254V 0.07 tolerated(0.32) probably_damaging(0.964) TCGA-55-6971-01 19 52505519 52505519 C A ZNF615 Nonsense_Mutation p.E11* 0.13 TCGA-55-6971-01 19 54313810 54313810 G T NLRP12 Missense_Mutation p.A368E 0.17 tolerated(0.19) benign(0.376) TCGA-55-6971-01 19 58927210 58927210 G T ZNF584 Intron 0.13 TCGA-55-6971-01 1 167097506 167097506 A G DUSP27 Silent p.P1046P 0.12 TCGA-55-6971-01 1 204433733 204433733 C T PIK3C2B Splice_Site p.X345_splice 0.17 TCGA-55-6971-01 1 204587091 204587091 G - LRRN2 Frame_Shift_Del p.P677Lfs*75 0.09 TCGA-55-6971-01 1 208390136 208390136 C A PLXNA2 Nonsense_Mutation p.E378* 0.12 TCGA-55-6971-01 1 208390870 208390870 T A PLXNA2 Missense_Mutation p.Y133F 0.22 tolerated(0.72) probably_damaging(0.976) TCGA-55-6971-01 1 243419506 243419506 G A SDCCAG8 Missense_Mutation p.E11K 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-6971-01 1 248263055 248263055 C A OR2L13 Nonsense_Mutation p.C126* 0.09 TCGA-55-6971-01 1 248569566 248569566 G T OR2T1 Missense_Mutation p.A91S 0.21 tolerated(0.21) benign(0.081) TCGA-55-6971-01 1 32084987 32084987 C T HCRTR1 Missense_Mutation p.T65M 0.23 tolerated(0.08) benign(0.014) TCGA-55-6971-01 1 44071216 44071216 G T PTPRF Missense_Mutation p.V1136L 0.15 deleterious(0) possibly_damaging(0.816) TCGA-55-6971-01 1 85405312 85405312 C A MCOLN2 Missense_Mutation p.G345V 0.31 deleterious(0.02) possibly_damaging(0.796) TCGA-55-6971-01 1 91404020 91404020 G T ZNF644 Nonsense_Mutation p.S964* 0.15 TCGA-55-6971-01 20 45354495 45354495 G T SLC2A10 Missense_Mutation p.V274L 0.29 tolerated(0.1) benign(0.116) TCGA-55-6971-01 22 17265172 17265172 C A XKR3 Silent p.V239V 0.22 TCGA-55-6971-01 22 23915549 23915549 C G IGLL1 Silent p.T182T 0.27 TCGA-55-6971-01 22 36710225 36710225 C G MYH9 Missense_Mutation p.D507H 0.16 probably_damaging(0.997) TCGA-55-6971-01 2 120677693 120677693 G A PTPN4 Missense_Mutation p.A293T 0.13 tolerated(0.34) possibly_damaging(0.524) TCGA-55-6971-01 2 131975957 131975957 T C POTEE 5'UTR 0.12 TCGA-55-6971-01 2 136673803 136673803 C T DARS Missense_Mutation p.D367N 0.14 deleterious(0) probably_damaging(0.989) TCGA-55-6971-01 2 171239692 171239692 C A MYO3B Missense_Mutation p.S393Y 0.16 deleterious(0) probably_damaging(0.99) TCGA-55-6971-01 2 210560942 210560942 G T MAP2 Missense_Mutation p.A1350S 0.19 deleterious(0) probably_damaging(0.999) TCGA-55-6971-01 2 228767798 228767798 G A DAW1 Silent p.Q207Q 0.16 TCGA-55-6971-01 2 24498701 24498701 G T ITSN2 Nonsense_Mutation p.Y654* 0.15 TCGA-55-6971-01 2 54148147 54148147 T A PSME4 Missense_Mutation p.Y714F 0.17 deleterious(0.04) benign(0.214) TCGA-55-6971-01 3 148559661 148559661 C T CPB1 Missense_Mutation p.H176Y 0.12 deleterious(0.01) probably_damaging(1) TCGA-55-6971-01 3 26751492 26751492 G T LRRC3B Missense_Mutation p.G110V 0.13 deleterious(0) probably_damaging(0.997) TCGA-55-6971-01 3 69990419 69990419 A G MITF Silent p.L233L 0.15 TCGA-55-6971-01 3 74411061 74411061 C T CNTN3 Silent p.V448V 0.09 TCGA-55-6971-01 4 141578684 141578684 C - TBC1D9 Frame_Shift_Del p.G735Efs*4 0.14 TCGA-55-6971-01 5 112860861 112860861 T A YTHDC2 Missense_Mutation p.F154L 0.14 tolerated(0.85) benign(0) TCGA-55-6971-01 5 126993163 126993163 T C CTXN3 5'UTR 0.14 TCGA-55-6971-01 5 151784021 151784021 C A NMUR2 Missense_Mutation p.Q218H 0.12 deleterious(0.01) probably_damaging(1) TCGA-55-6971-01 5 169697723 169697723 C A LCP2 Missense_Mutation p.D175Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-55-6971-01 5 41038924 41038924 G T MROH2B Missense_Mutation p.L710I 0.19 tolerated(0.26) possibly_damaging(0.801) TCGA-55-6971-01 5 90072275 90072275 G T GPR98 Missense_Mutation p.A4137S 0.19 possibly_damaging(0.739) TCGA-55-6971-01 6 114383989 114383989 C T HS3ST5 Silent p.A7A 0.14 TCGA-55-6971-01 6 130762987 130762987 C T TMEM200A Missense_Mutation p.H474Y 0.24 deleterious(0.02) probably_damaging(0.94) TCGA-55-6971-01 6 144803496 144803496 G A UTRN Missense_Mutation p.R1220K 0.28 tolerated(0.08) probably_damaging(0.996) TCGA-55-6971-01 6 43613023 43613023 T A RSPH9 Missense_Mutation p.L63Q 0.15 tolerated(0.07) benign(0.4) TCGA-55-6971-01 6 79655879 79655879 T C PHIP Missense_Mutation p.N1490S 0.11 tolerated(0.84) benign(0.001) TCGA-55-6971-01 7 133986513 133986513 C A SLC35B4 Missense_Mutation p.G163C 0.15 deleterious(0) probably_damaging(1) TCGA-55-6971-01 7 142013291 142013291 G A TRBV4-1 Missense_Mutation p.R49K 0.19 deleterious(0) benign(0.031) TCGA-55-6971-01 7 142162023 142162023 G T TRBV6-6 Missense_Mutation p.N84K 0.09 tolerated(0.18) benign(0.009) TCGA-55-6971-01 7 143701548 143701548 T C OR6B1 Silent p.F153F 0.11 TCGA-55-6971-01 7 144150530 144150530 T G TPK1 3'UTR 0.18 TCGA-55-6971-01 7 29070208 29070208 C A CPVL Silent p.A435A 0.14 TCGA-55-6971-01 7 76982913 76982913 C A GSAP Missense_Mutation p.D462Y 0.15 deleterious(0) probably_damaging(0.998) TCGA-55-6971-01 7 92762430 92762430 C G SAMD9L Missense_Mutation p.S952T 0.09 tolerated(0.16) benign(0.026) TCGA-55-6971-01 8 135622829 135622829 G A ZFAT Missense_Mutation p.P173L 0.22 deleterious(0.02) benign(0.002) TCGA-55-6971-01 8 57080807 57080807 C T PLAG1 Missense_Mutation p.D8N 0.10 tolerated_low_confidence(0.94) probably_damaging(0.956) TCGA-55-6971-01 8 61774808 61774808 T C CHD7 Silent p.H2628H 0.19 TCGA-55-6971-01 8 95792635 95792635 T C DPY19L4 Missense_Mutation p.W542R 0.22 tolerated(0.05) probably_damaging(0.912) TCGA-55-6971-01 9 101824569 101824569 C T COL15A1 Missense_Mutation p.P1192S 0.15 tolerated(0.05) probably_damaging(0.998) TCGA-55-6971-01 9 117826313 117826313 G A TNC Silent p.A1174A 0.08 TCGA-55-6971-01 9 133333866 133333866 G T ASS1 Missense_Mutation p.D85Y 0.16 deleterious(0.01) probably_damaging(0.99) TCGA-55-6971-01 9 135975776 135975776 C A RALGDS Intron 0.17 TCGA-55-6971-01 9 136029493 136029493 C T GBGT1 Missense_Mutation p.G172D 0.17 tolerated(0.26) benign(0.044) TCGA-55-6971-01 9 37541466 37541466 T C FBXO10 Silent p.L100L 0.19 TCGA-55-6971-01 X 107418883 107418883 C A COL4A6 Splice_Site p.X945_splice 0.18 TCGA-55-6971-01 X 108926642 108926642 A G ACSL4 Missense_Mutation p.L25P 0.21 deleterious(0) possibly_damaging(0.832) TCGA-55-6971-01 X 130222678 130222678 C T ARHGAP36 Silent p.P521P 0.24 TCGA-55-6971-01 X 134681100 134681100 C A DDX26B Missense_Mutation p.Q218K 0.11 deleterious(0) possibly_damaging(0.755) TCGA-55-6971-01 X 135047290 135047290 C A MMGT1 Missense_Mutation p.G97C 0.12 deleterious(0) probably_damaging(1) TCGA-55-6971-01 X 138708452 138708452 A T MCF2 Missense_Mutation p.V256E 0.21 deleterious(0) probably_damaging(0.997) TCGA-55-6971-01 X 147106420 147106420 G T FMR1NB Missense_Mutation p.R223I 0.15 deleterious(0.01) benign(0.003) TCGA-55-6971-01 X 154158121 154158121 C T F8 Missense_Mutation p.R1315K 0.09 tolerated(0.59) benign(0.002) TCGA-55-6971-01 X 34149183 34149183 T C FAM47A Missense_Mutation p.K405E 0.19 tolerated(0.95) benign(0.058) TCGA-55-6971-01 X 47979493 47979493 C T SSX6 RNA 0.23 TCGA-55-6971-01 X 48772360 48772360 C A PIM2 Missense_Mutation p.A178S 0.21 deleterious(0) benign(0.016) TCGA-55-6971-01 X 54359891 54359891 G T WNK3 Silent p.A72A 0.23 TCGA-55-6971-01 X 71426847 71426847 T C ERCC6L Silent p.V590V 0.13 TCGA-55-6971-01 X 73064238 73064238 G C XIST RNA 0.19 TCGA-55-6971-01 X 7811292 7811292 G T VCX Missense_Mutation p.E16D 0.11 tolerated_low_confidence(0.14) unknown(0) TCGA-55-6972-01 10 102789858 102789858 G T PDZD7 Missense_Mutation p.T40K 0.17 deleterious_low_confidence(0) benign(0.375) TCGA-55-6972-01 10 11047380 11047380 G A RP1-251M9.3 3'Flank 0.10 TCGA-55-6972-01 10 115535537 115535537 G C PLEKHS1 Missense_Mutation p.E315Q 0.20 deleterious(0.01) possibly_damaging(0.781) TCGA-55-6972-01 10 119044119 119044119 T C PDZD8 Missense_Mutation p.R709G 0.49 deleterious(0) benign(0.193) TCGA-55-6972-01 10 124336136 124336136 G T DMBT1 Missense_Mutation p.V169L 0.60 deleterious(0.02) benign(0.075) TCGA-55-6972-01 10 127414386 127414386 A G EDRF1 Silent p.E257E 0.43 TCGA-55-6972-01 10 134627716 134627716 C T TTC40 Missense_Mutation p.R2443K 0.07 tolerated(0.96) benign(0.019) TCGA-55-6972-01 10 15902302 15902302 G T FAM188A 5'UTR 0.73 TCGA-55-6972-01 10 17362963 17362963 G A ST8SIA6 Nonsense_Mutation p.Q371* 0.49 TCGA-55-6972-01 10 26377188 26377189 - T MYO3A Frame_Shift_Ins p.G474Wfs*9 0.18 TCGA-55-6972-01 10 27702608 27702608 G A PTCHD3 Missense_Mutation p.T191I 0.18 tolerated(0.09) benign(0.034) TCGA-55-6972-01 10 38246370 38246370 G T ZNF25 Missense_Mutation p.N40K 0.56 deleterious(0) possibly_damaging(0.562) TCGA-55-6972-01 10 44873113 44873113 C T CXCL12 3'UTR 0.82 TCGA-55-6972-01 10 45652291 45652291 G A RP11-445N18.7 RNA 0.43 TCGA-55-6972-01 10 55569015 55569015 C T PCDH15 Missense_Mutation p.E533K 0.66 deleterious_low_confidence(0) unknown(0) TCGA-55-6972-01 10 55721652 55721652 C A PCDH15 Nonsense_Mutation p.G957* 0.49 TCGA-55-6972-01 10 55955638 55955638 G T PCDH15 Missense_Mutation p.D370E 0.71 tolerated(0.23) probably_damaging(0.967) TCGA-55-6972-01 10 70548067 70548067 T C CCAR1 Silent p.L1057L 0.04 TCGA-55-6972-01 10 93453 93453 C T TUBB8 Missense_Mutation p.M293I 0.07 deleterious_low_confidence(0.03) benign(0.026) TCGA-55-6972-01 11 101341974 101341974 C A TRPC6 Missense_Mutation p.W783C 0.49 tolerated(0.84) benign(0.003) TCGA-55-6972-01 11 118038984 118038984 A G SCN2B Silent p.I88I 0.22 TCGA-55-6972-01 11 124412753 124412753 G T OR8B12 Silent p.P266P 0.21 TCGA-55-6972-01 11 1262528 1262528 G A MUC5B Missense_Mutation p.S1473N 0.40 unknown(0) TCGA-55-6972-01 11 130784592 130784592 C T SNX19 Missense_Mutation p.D415N 0.54 tolerated(0.06) benign(0.12) TCGA-55-6972-01 11 17553076 17553076 C G USH1C Missense_Mutation p.A40P 0.23 tolerated(1) benign(0) TCGA-55-6972-01 11 20907031 20907031 C T NELL1 Missense_Mutation p.P183L 0.17 deleterious(0.02) benign(0.082) TCGA-55-6972-01 11 2592631 2592631 C T KCNQ1 Silent p.I227I 0.16 TCGA-55-6972-01 11 55563503 55563503 C A OR5D14 Missense_Mutation p.P158T 0.59 deleterious(0.05) benign(0.002) TCGA-55-6972-01 11 56019936 56019936 C A OR5T3 Missense_Mutation p.N87K 0.20 tolerated(0.13) benign(0.022) TCGA-55-6972-01 11 56085785 56085785 G T OR8K3 Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0) benign(0.419) TCGA-55-6972-01 11 56143609 56143609 C A OR8U1 Missense_Mutation p.H170Q 0.11 deleterious(0.04) benign(0.371) TCGA-55-6972-01 11 64519513 64519513 C T PYGM Missense_Mutation p.E551K 0.13 tolerated(0.44) possibly_damaging(0.732) TCGA-55-6972-01 11 76829300 76829300 G C CAPN5 Missense_Mutation p.A357P 0.55 tolerated(0.08) possibly_damaging(0.903) TCGA-55-6972-01 11 93862636 93862636 C T PANX1 Missense_Mutation p.A53V 0.12 deleterious(0) probably_damaging(0.997) TCGA-55-6972-01 11 94862354 94862354 A G ENDOD1 Missense_Mutation p.I372V 0.26 tolerated(0.93) benign(0.004) TCGA-55-6972-01 11 99715867 99715867 C T CNTN5 Silent p.Y150Y 0.34 TCGA-55-6972-01 12 110236509 110236509 G A TRPV4 Silent p.A354A 0.35 TCGA-55-6972-01 12 110891576 110891576 C T GPN3 Missense_Mutation p.G294E 0.21 deleterious(0.01) probably_damaging(0.99) TCGA-55-6972-01 12 113907084 113907084 G A LHX5 Silent p.A80A 0.44 TCGA-55-6972-01 12 12302005 12302005 C T LRP6 Missense_Mutation p.R1026H 0.36 deleterious(0.03) benign(0.086) TCGA-55-6972-01 12 124349195 124349195 C G DNAH10 Missense_Mutation p.S2203C 0.07 probably_damaging(1) TCGA-55-6972-01 12 124379262 124379262 C A DNAH10 Missense_Mutation p.S2973Y 0.44 benign(0.055) TCGA-55-6972-01 12 124857117 124857117 G C NCOR2 Missense_Mutation p.S753C 0.38 unknown(0) TCGA-55-6972-01 12 22063859 22063859 T A ABCC9 Silent p.A355A 0.39 TCGA-55-6972-01 12 55421034 55421034 C G NEUROD4 Missense_Mutation p.P271A 0.21 tolerated(0.22) probably_damaging(0.999) TCGA-55-6972-01 12 58018721 58018721 C T SLC26A10 Missense_Mutation p.R434C 0.13 deleterious(0) probably_damaging(0.976) TCGA-55-6972-01 12 6143932 6143932 C G VWF Silent p.T869T 0.32 TCGA-55-6972-01 12 7043174 7043174 C T ATN1 Nonsense_Mutation p.R4* 0.45 TCGA-55-6972-01 12 78400423 78400423 C A NAV3 Missense_Mutation p.P369T 0.49 deleterious(0) probably_damaging(0.951) TCGA-55-6972-01 13 111160425 111160425 G C COL4A2 Missense_Mutation p.E1580Q 0.13 unknown(0) TCGA-55-6972-01 13 29599154 29599154 G A MTUS2 Missense_Mutation p.E117K 0.13 tolerated(0.05) benign(0.124) TCGA-55-6972-01 13 41533103 41533103 C A ELF1 Missense_Mutation p.G41V 0.36 tolerated(0.12) probably_damaging(0.952) TCGA-55-6972-01 13 41704721 41704721 C G KBTBD6 Missense_Mutation p.E643Q 0.13 deleterious_low_confidence(0.05) benign(0.42) TCGA-55-6972-01 13 48832951 48832951 C T ITM2B Nonsense_Mutation p.Q195* 0.10 TCGA-55-6972-01 13 61986420 61986420 C G PCDH20 Missense_Mutation p.K604N 0.53 tolerated(0.1) benign(0.375) TCGA-55-6972-01 14 105413076 105413076 G C AHNAK2 Missense_Mutation p.F2904L 0.03 benign(0.019) TCGA-55-6972-01 14 106621982 106621982 A T IGHV3-16 Missense_Mutation p.I88N 0.50 deleterious_low_confidence(0) benign(0.138) TCGA-55-6972-01 14 106805604 106805604 G T IGHV4-31 Missense_Mutation p.P14H 0.20 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-55-6972-01 14 106805605 106805605 G T IGHV4-31 Missense_Mutation p.P14T 0.21 deleterious_low_confidence(0) possibly_damaging(0.894) TCGA-55-6972-01 14 20926779 20926779 A C TMEM55B Missense_Mutation p.L265W 0.38 deleterious(0) probably_damaging(0.939) TCGA-55-6972-01 14 23450742 23450742 C A AJUBA Missense_Mutation p.G245V 0.62 tolerated(0.2) benign(0) TCGA-55-6972-01 14 36785917 36785917 T C MBIP Silent p.Q77Q 0.45 TCGA-55-6972-01 14 37051560 37051560 C T NKX2-8 Missense_Mutation p.R12H 0.25 deleterious(0) probably_damaging(0.991) TCGA-55-6972-01 14 47530459 47530459 G T MDGA2 Missense_Mutation p.S506R 0.12 tolerated(0.12) probably_damaging(0.988) TCGA-55-6972-01 14 70512864 70512864 C T SLC8A3 Missense_Mutation p.A862T 0.45 deleterious(0) benign(0.068) TCGA-55-6972-01 14 81659125 81659125 T A GTF2A1 Missense_Mutation p.Q224L 0.51 tolerated(0.07) probably_damaging(0.982) TCGA-55-6972-01 15 38805044 38805044 G A RASGRP1 Silent p.L263L 0.31 TCGA-55-6972-01 15 43940128 43940128 G C CATSPER2 Missense_Mutation p.I44M 0.22 tolerated(0.19) benign(0.066) TCGA-55-6972-01 15 72495446 72495446 G A PKM Silent p.L408L 0.13 TCGA-55-6972-01 15 73925620 73925623 GGGA - NPTN 5'UTR 0.38 TCGA-55-6972-01 15 80889704 80889704 C T ARNT2 3'UTR 0.18 TCGA-55-6972-01 15 89719165 89719165 C A ABHD2 Missense_Mutation p.Q221K 0.39 tolerated(1) benign(0.004) TCGA-55-6972-01 15 91523510 91523510 C T PRC1 Missense_Mutation p.S311N 0.44 deleterious(0) probably_damaging(0.965) TCGA-55-6972-01 15 91835670 91835670 C T SV2B Missense_Mutation p.S647F 0.44 deleterious(0) probably_damaging(0.989) TCGA-55-6972-01 16 2153733 2153733 C G PKD1 Silent p.T2775T 0.57 TCGA-55-6972-01 16 239225 239225 G A LUC7L Missense_Mutation p.S363L 0.05 deleterious_low_confidence(0) benign(0.184) TCGA-55-6972-01 16 4254601 4254601 C A SRL Missense_Mutation p.L32F 0.15 tolerated(0.24) benign(0.22) TCGA-55-6972-01 16 51174808 51174808 G A SALL1 Missense_Mutation p.S442F 0.06 deleterious(0) possibly_damaging(0.615) TCGA-55-6972-01 16 53726277 53726277 C A RPGRIP1L Splice_Site p.X77_splice 0.13 TCGA-55-6972-01 16 55854289 55854289 C A CES1 Missense_Mutation p.A266S 0.26 tolerated(0.15) benign(0.38) TCGA-55-6972-01 16 61891090 61891113 TCCATAAACTGGGTCATCAGCGTC - CDH8 In_Frame_Del p.D193_G200del 0.28 TCGA-55-6972-01 16 89762019 89762019 C T CDK10 Silent p.L334L 0.25 TCGA-55-6972-01 17 10363311 10363311 G T MYH4 Nonsense_Mutation p.Y458* 0.38 TCGA-55-6972-01 17 10426935 10426935 G A MYH2 Missense_Mutation p.H1784Y 0.06 deleterious(0) benign(0.35) TCGA-55-6972-01 17 10451137 10451137 G T MYH2 Missense_Mutation p.A34D 0.09 deleterious(0.01) benign(0.385) TCGA-55-6972-01 17 11837248 11837248 C A DNAH9 Missense_Mutation p.H4117N 0.30 probably_damaging(0.999) TCGA-55-6972-01 17 17171207 17171207 G C COPS3 Missense_Mutation p.L145V 0.45 deleterious(0.05) possibly_damaging(0.8) TCGA-55-6972-01 17 2367611 2367611 G C METTL16 Missense_Mutation p.P207A 0.38 deleterious(0) possibly_damaging(0.835) TCGA-55-6972-01 17 3917482 3917482 C A ZZEF1 Missense_Mutation p.G2772V 0.27 deleterious(0) probably_damaging(1) TCGA-55-6972-01 17 41226380 41226380 G A BRCA1 Missense_Mutation p.T1569M 0.09 tolerated(1) benign(0.001) TCGA-55-6972-01 17 41939258 41939258 C T CD300LG Silent p.F326F 0.57 TCGA-55-6972-01 17 48560834 48560834 G A RSAD1 Silent p.L346L 0.55 TCGA-55-6972-01 17 53398181 53398181 G A HLF Missense_Mutation p.E277K 0.11 deleterious(0) probably_damaging(0.998) TCGA-55-6972-01 17 56343594 56343594 C T LPO Silent p.L534L 0.12 TCGA-55-6972-01 17 72846028 72846028 G A GRIN2C Silent p.I512I 0.12 TCGA-55-6972-01 17 73736482 73736482 G A ITGB4 Silent p.E830E 0.10 TCGA-55-6972-01 17 7468082 7468082 C T SENP3 Nonsense_Mutation p.Q286* 0.15 TCGA-55-6972-01 17 76471465 76471465 C A DNAH17 Silent p.V2788V 0.20 TCGA-55-6972-01 17 76497211 76497211 C T DNAH17-AS1 3'UTR 0.25 TCGA-55-6972-01 17 79479022 79479022 G C ACTG1 Missense_Mutation p.F90L 0.22 deleterious_low_confidence(0.01) probably_damaging(0.975) TCGA-55-6972-01 17 7980316 7980316 G - ALOX12B Frame_Shift_Del p.L423Sfs*44 0.27 TCGA-55-6972-01 18 33706278 33706278 C A SLC39A6 Silent p.R231R 0.46 TCGA-55-6972-01 18 34335227 34335227 G T FHOD3 Missense_Mutation p.A1285S 0.55 deleterious(0) possibly_damaging(0.882) TCGA-55-6972-01 18 42532066 42532066 C T SETBP1 Missense_Mutation p.H921Y 0.37 deleterious(0.03) probably_damaging(0.991) TCGA-55-6972-01 18 51863546 51863546 A G STARD6 Silent p.I72I 0.41 TCGA-55-6972-01 18 56247303 56247303 C A ALPK2 Silent p.V235V 0.54 TCGA-55-6972-01 19 1011931 1011931 C T TMEM259 Missense_Mutation p.R301Q 0.17 deleterious(0) probably_damaging(0.992) TCGA-55-6972-01 19 10599866 10599866 A T KEAP1 Splice_Site p.X570_splice 0.70 TCGA-55-6972-01 19 10906047 10906047 G C DNM2 Splice_Site p.X377_splice 0.36 TCGA-55-6972-01 19 13928151 13928154 ACTT - ZSWIM4 Frame_Shift_Del p.L435Pfs*134 0.09 TCGA-55-6972-01 19 14910938 14910938 C T OR7C1 Missense_Mutation p.G4E 0.80 tolerated_low_confidence(0.4) benign(0.012) TCGA-55-6972-01 19 17885230 17885230 C A FCHO1 Missense_Mutation p.A288D 0.45 deleterious(0.03) benign(0.35) TCGA-55-6972-01 19 23405372 23405372 C G ZNF724P Missense_Mutation p.E559Q 0.37 deleterious(0.04) probably_damaging(0.977) TCGA-55-6972-01 19 291377 291377 C T PPAP2C 5'Flank 0.29 TCGA-55-6972-01 19 30936464 30936464 C A ZNF536 Missense_Mutation p.H665Q 0.63 tolerated(1) benign(0.002) TCGA-55-6972-01 19 33130317 33130317 G A ANKRD27 Missense_Mutation p.S354L 0.10 deleterious(0) possibly_damaging(0.637) TCGA-55-6972-01 19 36381384 36381384 C A NFKBID Missense_Mutation p.K205N 0.45 deleterious(0) probably_damaging(0.999) TCGA-55-6972-01 19 37441787 37441787 A G ZNF568 Missense_Mutation p.R578G 0.10 deleterious(0.01) benign(0.008) TCGA-55-6972-01 19 40433630 40433630 C A FCGBP Missense_Mutation p.K213N 0.42 benign(0.444) TCGA-55-6972-01 19 41081435 41081435 G A SPTBN4 Missense_Mutation p.R2552K 0.27 tolerated(0.42) benign(0.067) TCGA-55-6972-01 19 44635321 44635321 T G ZNF225 Missense_Mutation p.F185C 0.43 deleterious(0.04) probably_damaging(0.987) TCGA-55-6972-01 19 50156067 50156067 C T SCAF1 Silent p.P807P 0.71 TCGA-55-6972-01 19 55143594 55143594 G A LILRB1 Silent p.P189P 0.84 TCGA-55-6972-01 19 58131770 58131770 C T ZNF134 Nonsense_Mutation p.Q95* 0.24 TCGA-55-6972-01 19 59028515 59028515 G T ZBTB45 Missense_Mutation p.P176T 0.55 deleterious(0) probably_damaging(0.996) TCGA-55-6972-01 19 7152778 7152778 C T INSR Silent p.K730K 0.21 TCGA-55-6972-01 1 118628577 118628577 G A SPAG17 Missense_Mutation p.T577I 0.76 tolerated(0.06) possibly_damaging(0.864) TCGA-55-6972-01 1 145536860 145536860 C T ITGA10 Missense_Mutation p.S747L 0.08 deleterious(0.01) benign(0.439) TCGA-55-6972-01 1 147086252 147086252 T A BCL9 Missense_Mutation p.S133T 0.08 tolerated(0.67) benign(0) TCGA-55-6972-01 1 149878386 149878386 C T SV2A Silent p.V567V 0.11 TCGA-55-6972-01 1 152193064 152193064 G T HRNR Silent p.G347G 0.58 TCGA-55-6972-01 1 153517283 153517283 G A S100A4 Intron 0.07 TCGA-55-6972-01 1 157666889 157666889 C T FCRL3 Intron 0.80 TCGA-55-6972-01 1 162737131 162737131 G T DDR2 Missense_Mutation p.W425C 0.32 tolerated(0.07) probably_damaging(0.928) TCGA-55-6972-01 1 169510973 169510973 G A F5 Nonsense_Mutation p.Q1119* 0.07 TCGA-55-6972-01 1 1720625 1720625 G A GNB1 Silent p.L261L 0.48 TCGA-55-6972-01 1 172543059 172543059 C G SUCO Missense_Mutation p.Q360E 0.06 deleterious(0) probably_damaging(0.989) TCGA-55-6972-01 1 186313522 186313525 TCTT - TPR Frame_Shift_Del p.R1136Cfs*2 0.11 TCGA-55-6972-01 1 18809739 18809739 C A KLHDC7A Missense_Mutation p.A755D 0.29 deleterious(0.03) possibly_damaging(0.451) TCGA-55-6972-01 1 196706742 196706742 G A CFH Missense_Mutation p.E912K 0.12 tolerated(1) benign(0.123) TCGA-55-6972-01 1 200818734 200818734 C T CAMSAP2 Missense_Mutation p.A946V 0.04 tolerated(0.32) benign(0.003) TCGA-55-6972-01 1 205350899 205350899 C T LEMD1 Missense_Mutation p.E145K 0.04 tolerated(0.43) benign(0.305) TCGA-55-6972-01 1 214169925 214169925 G A PROX1 Missense_Mutation p.R16K 0.57 tolerated_low_confidence(0.07) probably_damaging(0.97) TCGA-55-6972-01 1 221875903 221875903 C G DUSP10 Missense_Mutation p.A434P 0.53 deleterious(0) probably_damaging(0.998) TCGA-55-6972-01 1 228431126 228431126 G T OBSCN Missense_Mutation p.G1150C 0.30 probably_damaging(0.99) TCGA-55-6972-01 1 230381813 230381813 G A GALNT2 Missense_Mutation p.R245K 0.07 tolerated(1) benign(0.004) TCGA-55-6972-01 1 231472318 231472318 C G EXOC8 Missense_Mutation p.E392Q 0.05 deleterious(0.03) benign(0.432) TCGA-55-6972-01 1 233514969 233514969 C T MLK4 Silent p.L739L 0.08 TCGA-55-6972-01 1 235324510 235324510 C G RBM34 Missense_Mutation p.R11T 0.16 deleterious(0.01) benign(0.012) TCGA-55-6972-01 1 235416105 235416105 C G ARID4B Missense_Mutation p.E98D 0.06 deleterious(0.01) probably_damaging(0.986) TCGA-55-6972-01 1 237838040 237838040 G T RYR2 Missense_Mutation p.K2908N 0.32 possibly_damaging(0.872) TCGA-55-6972-01 1 237947744 237947744 C A RYR2 Silent p.A4244A 0.63 TCGA-55-6972-01 1 240370837 240370837 C G FMN2 Missense_Mutation p.P909A 0.55 unknown(0) TCGA-55-6972-01 1 248525221 248525221 G T OR2T4 Missense_Mutation p.M113I 0.46 deleterious(0.03) benign(0.117) TCGA-55-6972-01 1 248737411 248737411 G A OR2T34 Silent p.I216I 0.31 TCGA-55-6972-01 1 248789953 248789953 G T OR2T11 Silent p.I159I 0.57 TCGA-55-6972-01 1 249211644 249211644 G A PGBD2 Silent p.G287G 0.10 TCGA-55-6972-01 1 26153313 26153313 T C MTFR1L Silent p.D149D 0.33 TCGA-55-6972-01 1 33956887 33956887 C G ZSCAN20 Missense_Mutation p.F343L 0.11 deleterious(0.04) probably_damaging(0.999) TCGA-55-6972-01 1 33956899 33956899 C T ZSCAN20 Silent p.L347L 0.12 TCGA-55-6972-01 1 33956998 33956998 C T ZSCAN20 Silent p.V380V 0.10 TCGA-55-6972-01 1 33957238 33957238 C T ZSCAN20 Silent p.V460V 0.17 TCGA-55-6972-01 1 33957289 33957289 C T ZSCAN20 Silent p.F477F 0.18 TCGA-55-6972-01 1 33957330 33957330 C T ZSCAN20 Intron 0.19 TCGA-55-6972-01 1 38027726 38027726 G A DNALI1 Silent p.V229V 0.10 TCGA-55-6972-01 1 38272818 38272818 C T YRDC Missense_Mutation p.M153I 0.07 tolerated(0.17) benign(0.004) TCGA-55-6972-01 1 43621967 43621967 G C FAM183A Missense_Mutation p.D130H 0.11 deleterious(0) probably_damaging(0.938) TCGA-55-6972-01 1 54360014 54360014 T C DIO1 Missense_Mutation p.M44T 0.25 deleterious(0.01) benign(0.307) TCGA-55-6972-01 1 55145070 55145070 C T MROH7 Silent p.L728L 0.08 TCGA-55-6972-01 1 90399987 90399987 G T LRRC8D Nonsense_Mutation p.E454* 0.83 TCGA-55-6972-01 1 91973869 91973869 G A CDC7 Missense_Mutation p.E84K 0.47 tolerated(0.23) benign(0.21) TCGA-55-6972-01 1 93586141 93586141 G T MTF2 Missense_Mutation p.S278I 0.31 deleterious(0.01) possibly_damaging(0.622) TCGA-55-6972-01 20 18163777 18163777 G A CSRP2BP Missense_Mutation p.E607K 0.10 deleterious(0.01) benign(0.206) TCGA-55-6972-01 20 23472275 23472275 G C CST8 5'UTR 0.25 TCGA-55-6972-01 20 2776781 2776781 C A CPXM1 Missense_Mutation p.E423D 0.45 tolerated(0.14) benign(0.021) TCGA-55-6972-01 20 30359385 30359385 G C TPX2 Missense_Mutation p.E170Q 0.09 tolerated(0.57) benign(0.393) TCGA-55-6972-01 20 30418882 30418882 G A MYLK2 Silent p.V454V 0.23 TCGA-55-6972-01 20 36841846 36841846 G T KIAA1755 Silent p.R1067R 0.33 TCGA-55-6972-01 20 43353466 43353466 G A WISP2 Missense_Mutation p.R122H 0.57 tolerated(0.18) benign(0.013) TCGA-55-6972-01 20 44313526 44313526 T C WFDC10B Silent p.E71E 0.09 TCGA-55-6972-01 20 48124472 48124472 G T PTGIS Nonsense_Mutation p.Y496* 0.55 TCGA-55-6972-01 20 61512557 61512557 C T DIDO1 Missense_Mutation p.R1584H 0.14 benign(0.085) TCGA-55-6972-01 21 11039151 11039151 C G BAGE2 RNA 0.07 TCGA-55-6972-01 21 19632525 19632525 C T CHODL Missense_Mutation p.P186S 0.38 tolerated(0.14) benign(0.018) TCGA-55-6972-01 21 33346965 33346965 G C HUNK Missense_Mutation p.R370P 0.77 deleterious(0) probably_damaging(0.988) TCGA-55-6972-01 21 38385891 38385891 G A RIPPLY3 Missense_Mutation p.G71E 0.81 deleterious(0) possibly_damaging(0.631) TCGA-55-6972-01 21 46011946 46011946 G A KRTAP10-6 Silent p.S140S 0.80 TCGA-55-6972-01 22 17528285 17528285 G T CECR7 RNA 0.70 TCGA-55-6972-01 22 30660183 30660183 T A OSM Missense_Mutation p.I150F 0.94 deleterious(0) possibly_damaging(0.633) TCGA-55-6972-01 22 32889176 32889176 C G FBXO7 Missense_Mutation p.S351C 0.06 deleterious(0) probably_damaging(0.999) TCGA-55-6972-01 22 40356136 40356136 G T GRAP2 Missense_Mutation p.R83L 0.86 deleterious(0) probably_damaging(0.993) TCGA-55-6972-01 22 42139103 42139103 C G MEI1 Missense_Mutation p.P451A 0.44 deleterious(0.02) benign(0.079) TCGA-55-6972-01 22 46726075 46726075 C T GTSE1 3'UTR 0.57 TCGA-55-6972-01 2 107459563 107459563 G T ST6GAL2 Missense_Mutation p.R291S 0.52 benign(0.111) TCGA-55-6972-01 2 108999952 108999952 G A SULT1C4 Missense_Mutation p.E201K 0.54 deleterious(0) probably_damaging(1) TCGA-55-6972-01 2 109513632 109513632 G T EDAR Missense_Mutation p.L360I 0.27 deleterious(0) probably_damaging(0.996) TCGA-55-6972-01 2 133489398 133489398 G T NCKAP5 Missense_Mutation p.S1785R 0.52 tolerated(0.1) benign(0.345) TCGA-55-6972-01 2 158114729 158114729 C T GALNT5 Silent p.I45I 0.15 TCGA-55-6972-01 2 161052915 161052915 G C ITGB6 Missense_Mutation p.S53C 0.08 tolerated(0.08) possibly_damaging(0.676) TCGA-55-6972-01 2 163361086 163361104 ATCTTGTTAATGGTGCTGT - KCNH7 Frame_Shift_Del p.Y326Ffs*6 0.43 TCGA-55-6972-01 2 189860870 189860870 G A COL3A1 Missense_Mutation p.G543E 0.06 unknown(0) TCGA-55-6972-01 2 238285718 238285718 C T COL6A3 Missense_Mutation p.A923T 0.27 probably_damaging(0.99) TCGA-55-6972-01 2 238287566 238287566 C G COL6A3 Missense_Mutation p.S737T 0.07 probably_damaging(0.999) TCGA-55-6972-01 2 241569660 241569660 G A GPR35 Silent p.L128L 0.11 TCGA-55-6972-01 2 25965964 25965964 G A ASXL2 Missense_Mutation p.S1081L 0.13 tolerated(0.07) possibly_damaging(0.613) TCGA-55-6972-01 2 69053219 69053219 C A ARHGAP25 Missense_Mutation p.R612S 0.32 deleterious(0.01) benign(0.313) TCGA-55-6972-01 2 74589182 74589182 G A DCTN1 Silent p.L1232L 0.10 TCGA-55-6972-01 2 77746052 77746052 A T LRRTM4 Missense_Mutation p.C315S 0.50 deleterious(0) probably_damaging(0.996) TCGA-55-6972-01 2 79384745 79384745 G T REG3A Missense_Mutation p.S138Y 0.55 tolerated(0.07) possibly_damaging(0.904) TCGA-55-6972-01 2 95513900 95513900 C T RNU6-1320P 5'Flank 0.05 TCGA-55-6972-01 2 97866080 97866080 G C ANKRD36 Missense_Mutation p.R922P 0.29 deleterious_low_confidence(0) possibly_damaging(0.453) TCGA-55-6972-01 3 101576171 101576171 C A NFKBIZ Silent p.A657A 0.43 TCGA-55-6972-01 3 107491703 107491703 G A BBX Missense_Mutation p.D379N 0.08 tolerated(0.26) benign(0.003) TCGA-55-6972-01 3 112358314 112358314 C T CCDC80 Missense_Mutation p.G147R 0.42 deleterious(0) probably_damaging(0.995) TCGA-55-6972-01 3 121258347 121258347 G A POLQ Silent p.V188V 0.12 TCGA-55-6972-01 3 141622499 141622499 C T ATP1B3 Silent p.F49F 0.10 TCGA-55-6972-01 3 160679533 160679533 G A PPM1L Missense_Mutation p.E137K 0.20 tolerated(0.11) benign(0.048) TCGA-55-6972-01 3 169540649 169540649 C G LRRIQ4 Missense_Mutation p.H314D 0.40 tolerated(0.2) benign(0.197) TCGA-55-6972-01 3 193156315 193156315 G A ATP13A4 Missense_Mutation p.S874L 0.17 deleterious(0) probably_damaging(0.931) TCGA-55-6972-01 3 25654107 25654107 G - TOP2B Frame_Shift_Del p.Q1224Sfs*14 0.10 TCGA-55-6972-01 3 36874921 36874921 G C TRANK1 Missense_Mutation p.F2007L 0.09 tolerated(0.67) benign(0.001) TCGA-55-6972-01 3 47039673 47039673 C T NBEAL2 Silent p.F1025F 0.22 TCGA-55-6972-01 3 48884962 48884962 C T PRKAR2A Missense_Mutation p.R23Q 0.25 tolerated(0.06) probably_damaging(0.999) TCGA-55-6972-01 3 52825615 52825615 G T ITIH1 Silent p.V859V 0.40 TCGA-55-6972-01 3 58855927 58855927 C T C3orf67 Missense_Mutation p.R150K 0.10 deleterious(0.02) benign(0.309) TCGA-55-6972-01 3 70014355 70014355 C A MITF Silent p.R507R 0.37 TCGA-55-6972-01 3 88189046 88189046 G A ZNF654 Missense_Mutation p.E196K 0.14 tolerated(0.16) benign(0.011) TCGA-55-6972-01 3 93603605 93603605 C T PROS1 Missense_Mutation p.G487S 0.12 deleterious(0) probably_damaging(0.931) TCGA-55-6972-01 3 93812983 93812983 G T NSUN3 Splice_Site p.X156_splice 0.29 TCGA-55-6972-01 3 9798519 9798519 C - OGG1 Intron 0.21 TCGA-55-6972-01 4 13600671 13600671 G C BOD1L1 Missense_Mutation p.S2618C 0.10 benign(0.01) TCGA-55-6972-01 4 185138852 185138852 C T ENPP6 Missense_Mutation p.D41N 0.14 tolerated(0.11) benign(0.059) TCGA-55-6972-01 4 46930228 46930228 C A GABRA4 3'UTR 0.26 TCGA-55-6972-01 4 54218830 54218830 G A SCFD2 Silent p.L314L 0.09 TCGA-55-6972-01 4 70615512 70615512 G A SULT1B1 Missense_Mutation p.P101L 0.20 deleterious(0.01) probably_damaging(0.974) TCGA-55-6972-01 4 76442022 76442022 G A THAP6 Missense_Mutation p.A41T 0.45 deleterious(0) probably_damaging(0.994) TCGA-55-6972-01 4 78697452 78697453 - T CNOT6L Frame_Shift_Ins p.S34Ifs*11 0.18 TCGA-55-6972-01 4 91229569 91229569 C T CCSER1 Missense_Mutation p.S45F 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-6972-01 5 1083927 1083927 C A SLC12A7 Missense_Mutation p.E354D 0.28 tolerated(0.27) benign(0.003) TCGA-55-6972-01 5 128932353 128932353 C G ADAMTS19 Missense_Mutation p.H486D 0.76 deleterious(0) probably_damaging(1) TCGA-55-6972-01 5 131534590 131534590 C T P4HA2 Silent p.P429P 0.64 TCGA-55-6972-01 5 135288629 135288629 C T LECT2 Missense_Mutation p.C25Y 0.07 deleterious(0.04) probably_damaging(0.999) TCGA-55-6972-01 5 13870955 13870955 T C DNAH5 Missense_Mutation p.D1252G 0.36 possibly_damaging(0.539) TCGA-55-6972-01 5 140182020 140182020 T A PCDHA3 Missense_Mutation p.L413Q 0.55 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-6972-01 5 140480363 140480363 T C PCDHB3 Silent p.L44L 0.17 TCGA-55-6972-01 5 140558514 140558514 G A PCDHB8 Missense_Mutation p.G300E 0.04 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-55-6972-01 5 140558698 140558698 G T PCDHB8 Silent p.A361A 0.31 TCGA-55-6972-01 5 140559035 140559035 G A PCDHB8 Missense_Mutation p.V474I 0.15 tolerated_low_confidence(0.44) benign(0.03) TCGA-55-6972-01 5 147051334 147051334 G A JAKMIP2 Silent p.P12P 0.47 TCGA-55-6972-01 5 149314157 149314157 C A PDE6A Missense_Mutation p.G200V 0.42 deleterious(0) possibly_damaging(0.831) TCGA-55-6972-01 5 149375450 149375450 C G TIGD6 Missense_Mutation p.K154N 0.50 tolerated(0.23) benign(0.006) TCGA-55-6972-01 5 161569228 161569228 C A GABRG2 Silent p.T316T 0.57 TCGA-55-6972-01 5 169174491 169174491 A T DOCK2 Missense_Mutation p.T787S 0.56 tolerated(0.68) benign(0.002) TCGA-55-6972-01 5 177022519 177022519 C G TMED9 3'UTR 0.52 TCGA-55-6972-01 5 180622074 180622074 G A TRIM7 3'UTR 0.27 TCGA-55-6972-01 5 31464414 31464414 T A DROSHA Nonsense_Mutation p.R835* 0.44 TCGA-55-6972-01 5 31464415 31464415 C T DROSHA Missense_Mutation p.M834I 0.44 deleterious(0.01) benign(0.269) TCGA-55-6972-01 5 42801436 42801436 G A SEPP1 Intron 0.13 TCGA-55-6972-01 5 70806371 70806371 G C BDP1 Missense_Mutation p.R1151T 0.19 tolerated(0.06) benign(0.402) TCGA-55-6972-01 5 83476317 83476317 G T EDIL3 Nonsense_Mutation p.C83* 0.67 TCGA-55-6972-01 6 106554955 106554955 A T PRDM1 Missense_Mutation p.Q691L 0.33 tolerated(1) benign(0.002) TCGA-55-6972-01 6 111211547 111211547 G T AMD1 Missense_Mutation p.A139S 0.51 tolerated(0.92) benign(0.041) TCGA-55-6972-01 6 112670893 112670893 G T RFPL4B 5'UTR 0.25 TCGA-55-6972-01 6 12136102 12136102 A T HIVEP1 Missense_Mutation p.D2155V 0.27 deleterious(0) possibly_damaging(0.547) TCGA-55-6972-01 6 135509014 135509014 G A MYB Missense_Mutation p.D62N 0.36 deleterious(0.04) possibly_damaging(0.482) TCGA-55-6972-01 6 139206649 139206649 G A ECT2L Missense_Mutation p.E679K 0.16 deleterious(0) possibly_damaging(0.874) TCGA-55-6972-01 6 148867274 148867274 C A SASH1 Missense_Mutation p.R1158S 0.42 deleterious(0) probably_damaging(0.998) TCGA-55-6972-01 6 161567586 161567586 C T AGPAT4 Silent p.S271S 0.07 TCGA-55-6972-01 6 165715467 165715467 T A C6orf118 Missense_Mutation p.H115L 0.49 deleterious(0) benign(0.245) TCGA-55-6972-01 6 165723069 165723069 C A C6orf118 Nonsense_Mutation p.E3* 0.55 TCGA-55-6972-01 6 17539531 17539531 C G CAP2 Missense_Mutation p.S223C 0.03 tolerated(0.07) possibly_damaging(0.841) TCGA-55-6972-01 6 26045759 26045759 C T HIST1H3C Missense_Mutation p.R41C 0.12 deleterious_low_confidence(0.03) benign(0.001) TCGA-55-6972-01 6 26157077 26157077 G A HIST1H1E Silent p.K153K 0.18 TCGA-55-6972-01 6 27775480 27775480 C T HIST1H2BL Missense_Mutation p.D69N 0.10 deleterious_low_confidence(0.05) benign(0.079) TCGA-55-6972-01 6 30570166 30570166 G A PPP1R10 Missense_Mutation p.H754Y 0.08 deleterious_low_confidence(0) unknown(0) TCGA-55-6972-01 6 30672754 30672754 C T MDC1 Silent p.K1402K 0.24 TCGA-55-6972-01 6 31477606 31477606 G A MICB Missense_Mutation p.D358N 0.12 deleterious(0.02) probably_damaging(0.991) TCGA-55-6972-01 6 32372761 32372761 C T BTNL2 Missense_Mutation p.D128N 0.05 deleterious(0.01) possibly_damaging(0.574) TCGA-55-6972-01 6 4954210 4954210 G A CDYL Missense_Mutation p.V519M 0.13 tolerated(1) benign(0.153) TCGA-55-6972-01 6 51908484 51908484 G C PKHD1 Silent p.S920S 0.10 TCGA-55-6972-01 6 656554 656554 C A HUS1B Missense_Mutation p.D131Y 0.70 deleterious(0) probably_damaging(0.991) TCGA-55-6972-01 6 87969704 87969704 G T ZNF292 Missense_Mutation p.Q2119H 0.26 deleterious(0) probably_damaging(0.993) TCGA-55-6972-01 6 90400442 90400442 C T MDN1 Missense_Mutation p.E3567K 0.15 possibly_damaging(0.722) TCGA-55-6972-01 7 101747651 101747651 G A CUX1 Missense_Mutation p.E159K 0.12 tolerated(0.13) unknown(0) TCGA-55-6972-01 7 101957803 101957803 C T SH2B2 Nonsense_Mutation p.Q483* 0.40 TCGA-55-6972-01 7 103293132 103293132 C T RELN Silent p.K543K 0.05 TCGA-55-6972-01 7 114582368 114582368 C G MDFIC Missense_Mutation p.Q154E 0.21 tolerated_low_confidence(0.15) benign(0.012) TCGA-55-6972-01 7 130021969 130021969 G T CPA1 Silent p.L134L 0.38 TCGA-55-6972-01 7 142045659 142045659 G T TRBV4-2 Nonsense_Mutation p.E63* 0.19 TCGA-55-6972-01 7 146825926 146825926 G T CNTNAP2 Missense_Mutation p.V361L 0.44 tolerated(0.17) benign(0.001) TCGA-55-6972-01 7 150553968 150553968 C T AOC1 Missense_Mutation p.S137F 0.14 deleterious(0.02) possibly_damaging(0.779) TCGA-55-6972-01 7 151849853 151849853 G A KMT2C Missense_Mutation p.P4155S 0.09 benign(0.146) TCGA-55-6972-01 7 156619369 156619369 G C LMBR1 Missense_Mutation p.I83M 0.13 deleterious(0.03) possibly_damaging(0.828) TCGA-55-6972-01 7 2577957 2577957 C T BRAT1 Missense_Mutation p.E738K 0.15 tolerated(0.08) benign(0.255) TCGA-55-6972-01 7 30830881 30830881 C T FAM188B Missense_Mutation p.T255I 0.12 tolerated(0.16) benign(0.016) TCGA-55-6972-01 7 31917635 31917635 G A PDE1C Missense_Mutation p.T207I 0.43 deleterious(0.04) benign(0.298) TCGA-55-6972-01 7 48259079 48259079 G T ABCA13 Missense_Mutation p.W139L 0.43 probably_damaging(0.998) TCGA-55-6972-01 7 4828518 4828518 G A AP5Z1 Missense_Mutation p.R548H 0.15 deleterious(0) probably_damaging(0.955) TCGA-55-6972-01 7 48315194 48315194 A T ABCA13 Silent p.L1977L 0.45 TCGA-55-6972-01 7 62752812 62752812 C A ZNF733P RNA 0.19 TCGA-55-6972-01 7 81372201 81372201 T A HGF Intron 0.39 TCGA-55-6972-01 7 8198169 8198169 T A ICA1 Silent p.L231L 0.36 TCGA-55-6972-01 7 86468393 86468393 G C GRM3 Missense_Mutation p.M521I 0.38 tolerated(0.21) benign(0.024) TCGA-55-6972-01 7 87160773 87160773 G T ABCB1 Missense_Mutation p.A841E 0.45 deleterious(0.02) probably_damaging(0.968) TCGA-55-6972-01 7 88964048 88964048 C T ZNF804B Silent p.L584L 0.15 TCGA-55-6972-01 7 99084416 99084416 C T ZNF789 Missense_Mutation p.L195F 0.41 tolerated(0.7) benign(0.01) TCGA-55-6972-01 7 99161772 99161772 C G ZNF655 Intron 0.20 TCGA-55-6972-01 8 104831791 104831791 G T RIMS2 Intron 0.31 TCGA-55-6972-01 8 113249457 113249457 G T CSMD3 Missense_Mutation p.A3530E 0.47 deleterious(0) benign(0.392) TCGA-55-6972-01 8 120854054 120854054 T C DSCC1 Missense_Mutation p.T302A 0.61 tolerated(0.07) possibly_damaging(0.627) TCGA-55-6972-01 8 121531029 121531029 T A MTBP Missense_Mutation p.L861H 0.58 deleterious(0) probably_damaging(0.984) TCGA-55-6972-01 8 143607977 143607977 G A BAI1 Silent p.K1129K 0.44 TCGA-55-6972-01 8 144890795 144890795 G A SCRIB Missense_Mutation p.S700F 0.30 possibly_damaging(0.652) TCGA-55-6972-01 8 145138897 145138897 G C GPAA1 Silent p.L190L 0.56 TCGA-55-6972-01 8 16035465 16035465 C T MSR1 Silent p.Q11Q 0.30 TCGA-55-6972-01 8 1626417 1626417 G T DLGAP2 Missense_Mutation p.A696S 0.42 tolerated(0.12) possibly_damaging(0.834) TCGA-55-6972-01 8 17731590 17731590 A G FGL1 Missense_Mutation p.F147S 0.41 deleterious(0) possibly_damaging(0.828) TCGA-55-6972-01 8 2807771 2807771 G C CSMD1 Missense_Mutation p.N3432K 0.43 benign(0.005) TCGA-55-6972-01 8 3047486 3047486 C G CSMD1 Missense_Mutation p.Q1782H 0.73 benign(0.007) TCGA-55-6972-01 8 43147734 43147734 G T POTEA RNA 0.91 TCGA-55-6972-01 8 51306795 51306795 G C SNTG1 5'UTR 0.47 TCGA-55-6972-01 8 54163445 54163445 G C OPRK1 Silent p.P51P 0.55 TCGA-55-6972-01 8 61655605 61655605 A T CHD7 Silent p.A538A 0.24 TCGA-55-6972-01 8 68066321 68066321 G A CSPP1 Missense_Mutation p.E726K 0.51 tolerated(0.07) benign(0.03) TCGA-55-6972-01 8 85097191 85097191 G T RALYL 5'UTR 0.49 TCGA-55-6972-01 9 102595602 102595602 C T NR4A3 Silent p.L385L 0.10 TCGA-55-6972-01 9 104307162 104307162 C T RNF20 Nonsense_Mutation p.Q248* 0.12 TCGA-55-6972-01 9 121929547 121929547 C A BRINP1 Missense_Mutation p.D701Y 0.30 tolerated(0.12) benign(0.446) TCGA-55-6972-01 9 127245274 127245274 G C NR5A1 Missense_Mutation p.F383L 0.04 tolerated(0.67) benign(0.001) TCGA-55-6972-01 9 130825923 130825923 C T NAIF1 Missense_Mutation p.M256I 0.14 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-55-6972-01 9 138439091 138439091 G A OBP2A Missense_Mutation p.A92T 0.45 tolerated(0.45) benign(0.316) TCGA-55-6972-01 9 19296154 19296154 C G DENND4C Nonsense_Mutation p.S317* 0.08 TCGA-55-6972-01 9 32421015 32421015 G A ACO1 Silent p.L320L 0.10 TCGA-55-6972-01 9 32633430 32633430 T A TAF1L Silent p.A716A 0.36 TCGA-55-6972-01 9 32633431 32633431 G T TAF1L Missense_Mutation p.A716E 0.35 deleterious(0) probably_damaging(0.978) TCGA-55-6972-01 9 35548239 35548239 C T RUSC2 Missense_Mutation p.S574L 0.29 deleterious(0) benign(0.176) TCGA-55-6972-01 9 4661977 4661977 G A SPATA6L Silent p.L33L 0.20 TCGA-55-6972-01 9 69391091 69391091 G A ANKRD20A4 Splice_Site p.X200_splice 0.10 TCGA-55-6972-01 9 78749031 78749031 T C PCSK5 Silent p.F405F 0.55 TCGA-55-6972-01 9 84606679 84606679 G T SPATA31D1 Nonsense_Mutation p.G432* 0.44 TCGA-55-6972-01 9 84606680 84606680 G T SPATA31D1 Missense_Mutation p.G432V 0.41 tolerated(0.17) benign(0.412) TCGA-55-6972-01 9 95272282 95272282 C - ECM2 Frame_Shift_Del p.G402Efs*4 0.24 TCGA-55-6972-01 9 98740444 98740444 G A ERCC6L2 Missense_Mutation p.E119K 0.09 deleterious(0) probably_damaging(0.998) TCGA-55-6972-01 X 102339309 102339309 G T NXF3 Missense_Mutation p.N104K 0.93 tolerated(0.17) benign(0.11) TCGA-55-6972-01 X 12905433 12905433 G A TLR7 Missense_Mutation p.M602I 0.13 tolerated(0.38) benign(0.006) TCGA-55-6972-01 X 3533909 3533909 G C PRKX Missense_Mutation p.H300D 0.27 deleterious(0) probably_damaging(1) TCGA-55-6972-01 X 39933360 39933360 T A BCOR Silent p.T413T 0.91 TCGA-55-6972-01 X 47435805 47435805 C T SYN1 Missense_Mutation p.M327I 0.18 deleterious(0.04) benign(0.015) TCGA-55-6972-01 X 49853484 49853484 G A CLCN5 Missense_Mutation p.G563R 0.11 deleterious(0.01) probably_damaging(0.971) TCGA-55-6972-01 X 53409204 53409204 G A SMC1A Missense_Mutation p.S1129L 0.31 deleterious(0) probably_damaging(1) TCGA-55-6972-01 X 55249155 55249155 G C PAGE5 Missense_Mutation p.D118H 0.88 deleterious(0) possibly_damaging(0.907) TCGA-55-6972-01 X 73044457 73044457 C A XIST RNA 0.87 TCGA-55-6972-01 X 99551623 99551623 C T PCDH19 Silent p.L1033L 0.42 TCGA-55-6975-01 10 15255128 15255128 G - FAM171A1 Frame_Shift_Del p.S820* 0.10 TCGA-55-6975-01 10 51807977 51807977 G A RP11-324H6.5 RNA 0.19 TCGA-55-6975-01 10 62039305 62039305 A C ANK3 Missense_Mutation p.I69M 0.16 probably_damaging(0.986) TCGA-55-6975-01 10 68687361 68687361 C G LRRTM3 Silent p.V229V 0.21 TCGA-55-6975-01 10 69934070 69934070 A T MYPN Missense_Mutation p.S741C 0.18 deleterious(0.01) possibly_damaging(0.798) TCGA-55-6975-01 10 7697622 7697622 G T ITIH5 Missense_Mutation p.P36Q 0.21 deleterious(0) probably_damaging(1) TCGA-55-6975-01 11 104912156 104912156 A G CARD16 Silent p.L189L 0.14 TCGA-55-6975-01 11 49974207 49974207 A G OR4C13 Missense_Mutation p.K78R 0.10 deleterious_low_confidence(0.01) benign(0.12) TCGA-55-6975-01 11 55065638 55065638 C A TRIM51HP RNA 0.09 TCGA-55-6975-01 11 58480331 58480331 G C GLYAT Missense_Mutation p.T73S 0.25 deleterious(0.05) possibly_damaging(0.718) TCGA-55-6975-01 12 10167220 10167220 G C CLEC12B Missense_Mutation p.G97R 0.28 tolerated(0.25) benign(0.424) TCGA-55-6975-01 12 122845560 122845560 G A CLIP1 Silent p.S317S 0.31 TCGA-55-6975-01 12 123648494 123648494 T A MPHOSPH9 Intron 0.17 TCGA-55-6975-01 12 1346070 1346070 G A ERC1 Silent p.Q829Q 0.15 TCGA-55-6975-01 12 25398282 25398282 C A KRAS Missense_Mutation p.G13C 0.27 deleterious(0.02) probably_damaging(0.997) TCGA-55-6975-01 13 20580705 20580705 T A ZMYM2 Missense_Mutation p.S497R 0.10 tolerated(0.16) benign(0.112) TCGA-55-6975-01 13 30104763 30104763 C A SLC7A1 Missense_Mutation p.V206L 0.16 tolerated(0.37) possibly_damaging(0.612) TCGA-55-6975-01 13 35685096 35685096 C T NBEA Silent p.G661G 0.13 TCGA-55-6975-01 13 38320459 38320459 G T TRPC4 Missense_Mutation p.P171H 0.15 deleterious(0) probably_damaging(1) TCGA-55-6975-01 13 50586540 50586540 G T TRIM13 Missense_Mutation p.G158V 0.18 tolerated(0.19) possibly_damaging(0.878) TCGA-55-6975-01 13 98116634 98116634 A T RAP2A Missense_Mutation p.M164L 0.18 deleterious(0.01) benign(0.04) TCGA-55-6975-01 14 23883259 23883259 A G MYH7 Missense_Mutation p.L1871P 0.24 deleterious(0) probably_damaging(0.998) TCGA-55-6975-01 15 89421483 89421483 C T HAPLN3 Silent p.R267R 0.04 TCGA-55-6975-01 15 90190856 90190856 C A KIF7 Nonsense_Mutation p.E511* 0.24 TCGA-55-6975-01 16 57718367 57718367 G A GPR97 Missense_Mutation p.D410N 0.16 tolerated(0.2) benign(0.198) TCGA-55-6975-01 16 67228324 67228324 G T E2F4 Missense_Mutation p.A159S 0.23 deleterious(0) probably_damaging(0.925) TCGA-55-6975-01 17 10398615 10398615 G T MYH1 Missense_Mutation p.T1730N 0.21 tolerated(0.18) possibly_damaging(0.809) TCGA-55-6975-01 17 29670110 29670110 C G NF1 Missense_Mutation p.F2382L 0.06 deleterious(0) benign(0.006) TCGA-55-6975-01 17 35836962 35836962 A G TADA2A Missense_Mutation p.N403D 0.27 tolerated(0.2) possibly_damaging(0.588) TCGA-55-6975-01 17 59155884 59155884 G A BCAS3 Missense_Mutation p.S789N 0.27 tolerated(0.05) possibly_damaging(0.848) TCGA-55-6975-01 17 7577022 7577025 GCTT - TP53 Frame_Shift_Del p.K305Efs*39 0.28 TCGA-55-6975-01 17 79409867 79409867 A G RP11-1055B8.7 Missense_Mutation p.T498A 0.23 benign(0.002) TCGA-55-6975-01 18 22807111 22807111 G T ZNF521 Missense_Mutation p.F257L 0.24 tolerated(0.52) benign(0.076) TCGA-55-6975-01 19 11141546 11141546 G A SMARCA4 Missense_Mutation p.D1175N 0.55 probably_damaging(1) TCGA-55-6975-01 19 1255036 1255036 G T MIDN Missense_Mutation p.G278W 0.35 deleterious(0) probably_damaging(0.965) TCGA-55-6975-01 19 23316948 23316948 G A ZNF730 Missense_Mutation p.E24K 0.13 deleterious(0) benign(0.094) TCGA-55-6975-01 19 31770232 31770232 C A TSHZ3 Missense_Mutation p.S156I 0.18 deleterious(0.03) benign(0.12) TCGA-55-6975-01 19 43866393 43866393 G C CD177 3'UTR 0.33 TCGA-55-6975-01 19 55385751 55385751 C T FCAR Silent p.D2D 0.25 TCGA-55-6975-01 1 175937648 175937648 C A RFWD2 Intron 0.15 TCGA-55-6975-01 1 176668239 176668239 C A PAPPA2 Missense_Mutation p.P917H 0.18 tolerated(0.21) probably_damaging(0.994) TCGA-55-6975-01 1 190068073 190068073 C A BRINP3 Missense_Mutation p.R459L 0.17 tolerated(0.25) probably_damaging(0.995) TCGA-55-6975-01 1 204942475 204942475 A C NFASC Silent p.R403R 0.20 TCGA-55-6975-01 1 212799454 212799454 G A FAM71A Missense_Mutation p.R412Q 0.30 tolerated(0.32) benign(0.042) TCGA-55-6975-01 1 215820981 215820981 G T USH2A Missense_Mutation p.Q4892K 0.19 benign(0.026) TCGA-55-6975-01 1 215848451 215848451 G C USH2A Missense_Mutation p.P4268A 0.08 benign(0.075) TCGA-55-6975-01 1 216348731 216348731 G T USH2A Missense_Mutation p.S1497Y 0.31 benign(0.04) TCGA-55-6975-01 1 237777927 237777927 C G RYR2 Missense_Mutation p.I1833M 0.22 benign(0.125) TCGA-55-6975-01 1 248790069 248790069 C T OR2T11 Missense_Mutation p.V121M 0.28 tolerated(0.08) possibly_damaging(0.534) TCGA-55-6975-01 1 33236886 33236886 C G KIAA1522 Silent p.A702A 0.13 TCGA-55-6975-01 20 42265791 42265791 C G IFT52 Missense_Mutation p.P340A 0.14 deleterious(0.05) benign(0.167) TCGA-55-6975-01 20 47342840 47342840 G A PREX1 Missense_Mutation p.P203L 0.28 deleterious(0) probably_damaging(1) TCGA-55-6975-01 20 48164483 48164483 C T PTGIS Missense_Mutation p.R91H 0.21 deleterious(0.02) benign(0.019) TCGA-55-6975-01 20 50768641 50768641 T - ZFP64 3'UTR 0.18 TCGA-55-6975-01 20 5542132 5542132 T A GPCPD1 Silent p.I458I 0.11 TCGA-55-6975-01 22 30691008 30691008 C T TBC1D10A Silent p.T194T 0.10 TCGA-55-6975-01 22 39146305 39146305 G A SUN2 Nonsense_Mutation p.Q170* 0.11 TCGA-55-6975-01 2 128030447 128030447 T C ERCC3 Missense_Mutation p.I607M 0.13 deleterious(0.02) probably_damaging(0.936) TCGA-55-6975-01 2 178098799 178098799 T G NFE2L2 Missense_Mutation p.E82D 0.25 deleterious(0) probably_damaging(0.999) TCGA-55-6975-01 2 179612962 179612962 T C TTN Intron 0.05 TCGA-55-6975-01 2 180818938 180818938 T C CWC22 Silent p.P561P 0.26 TCGA-55-6975-01 2 201434585 201434585 A T SGOL2 Missense_Mutation p.I225F 0.15 tolerated(0.08) benign(0.033) TCGA-55-6975-01 2 219892557 219892557 G T CCDC108 Missense_Mutation p.L676M 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-55-6975-01 2 219892558 219892558 G T CCDC108 Nonsense_Mutation p.C675* 0.32 TCGA-55-6975-01 2 234545830 234545830 A T UGT1A10 Missense_Mutation p.Q221L 0.28 tolerated(0.53) benign(0.027) TCGA-55-6975-01 2 70106039 70106039 A G GMCL1 Splice_Site p.X485_splice 0.23 TCGA-55-6975-01 3 171417564 171417565 - C PLD1 Frame_Shift_Ins p.R400Efs*7 0.24 TCGA-55-6975-01 3 183368813 183368813 T G KLHL24 Missense_Mutation p.I223M 0.09 deleterious(0.02) possibly_damaging(0.555) TCGA-55-6975-01 3 46945070 46945070 C G PTH1R Nonsense_Mutation p.S569* 0.14 TCGA-55-6975-01 3 51978551 51978551 T C PARP3 Missense_Mutation p.I160T 0.26 deleterious(0.02) possibly_damaging(0.562) TCGA-55-6975-01 4 113353621 113353621 G A ALPK1 Missense_Mutation p.R973H 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-55-6975-01 4 126355520 126355520 G A FAT4 Missense_Mutation p.G2380E 0.08 probably_damaging(0.998) TCGA-55-6975-01 4 147861017 147861017 G A TTC29 Missense_Mutation p.R11C 0.09 tolerated(0.17) benign(0.023) TCGA-55-6975-01 4 15937797 15937797 G C FGFBP1 Silent p.S153S 0.17 TCGA-55-6975-01 4 23815375 23815375 C T PPARGC1A Silent p.S577S 0.15 TCGA-55-6975-01 4 947060 947060 G T TMEM175 Missense_Mutation p.R182L 0.13 deleterious(0.01) benign(0.411) TCGA-55-6975-01 5 126755779 126755779 A G MEGF10 Silent p.T490T 0.36 TCGA-55-6975-01 5 140249368 140249368 G A PCDHA11 Missense_Mutation p.R227Q 0.20 tolerated_low_confidence(1) benign(0.001) TCGA-55-6975-01 5 140537411 140537411 G A PCDHB17 3'UTR 0.16 TCGA-55-6975-01 5 140590309 140590309 G A PCDHB12 Silent p.T610T 0.12 TCGA-55-6975-01 5 7869310 7869310 C G MTRR Intron 0.05 TCGA-55-6975-01 5 82876243 82876243 C T VCAN Missense_Mutation p.S3394L 0.33 deleterious(0) probably_damaging(0.921) TCGA-55-6975-01 5 96430430 96430430 G T LIX1 3'UTR 0.28 TCGA-55-6975-01 6 116720446 116720446 G T DSE Silent p.V11V 0.20 TCGA-55-6975-01 6 154439861 154439861 G T OPRM1 3'UTR 0.22 TCGA-55-6975-01 6 15497243 15497243 G T JARID2 Missense_Mutation p.R596L 0.35 deleterious(0) benign(0.071) TCGA-55-6975-01 6 170169712 170169713 - A ERMARD Frame_Shift_Ins p.H380Tfs*2 0.17 TCGA-55-6975-01 6 25479352 25479352 C T LRRC16A Intron 0.18 TCGA-55-6975-01 6 31549372 31549372 C T LTB Missense_Mutation p.D82N 0.15 tolerated(0.07) benign(0.367) TCGA-55-6975-01 6 33403305 33403305 C T SYNGAP1 Missense_Mutation p.S226L 0.06 deleterious(0.01) benign(0.018) TCGA-55-6975-01 6 46129454 46129454 A T ENPP5 Missense_Mutation p.M348K 0.21 deleterious(0) probably_damaging(0.996) TCGA-55-6975-01 6 52285123 52285123 T A EFHC1 5'UTR 0.26 TCGA-55-6975-01 7 116769845 116769845 A T ST7 Splice_Site p.X132_splice 0.26 TCGA-55-6975-01 7 120884326 120884326 G T CPED1 Missense_Mutation p.Q748H 0.26 deleterious(0) probably_damaging(0.996) TCGA-55-6975-01 7 121732955 121732955 C A AASS Missense_Mutation p.G606V 0.21 deleterious(0) probably_damaging(1) TCGA-55-6975-01 7 127017356 127017356 A - ZNF800 Frame_Shift_Del p.L62* 0.18 TCGA-55-6975-01 8 110457547 110457547 G C PKHD1L1 Missense_Mutation p.G1817R 0.17 tolerated(0.71) benign(0.083) TCGA-55-6975-01 8 110476761 110476761 C A PKHD1L1 Missense_Mutation p.P2567Q 0.14 deleterious(0) probably_damaging(1) TCGA-55-6975-01 8 130789826 130789826 G C GSDMC Missense_Mutation p.S3C 0.28 deleterious(0) probably_damaging(0.982) TCGA-55-6975-01 8 95837232 95837232 T G INTS8 Nonsense_Mutation p.L81* 0.25 TCGA-55-6975-01 9 8517911 8517911 C A PTPRD Missense_Mutation p.A494S 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-55-6975-01 9 86293406 86293406 G A UBQLN1 Missense_Mutation p.R274C 0.29 deleterious(0.03) probably_damaging(0.988) TCGA-55-6975-01 9 94495619 94495619 G T ROR2 Missense_Mutation p.A241E 0.32 tolerated(1) benign(0.003) TCGA-55-6975-01 X 135762897 135762897 G A ARHGEF6 Missense_Mutation p.A566V 0.10 tolerated(0.47) benign(0.001) TCGA-55-6975-01 X 151304025 151304025 T C MAGEA10 Missense_Mutation p.Q23R 0.05 tolerated(0.08) benign(0.115) TCGA-55-6975-01 X 71425322 71425322 G - ERCC6L Frame_Shift_Del p.I1100Lfs*5 0.29 TCGA-55-6975-01 X 79938052 79938052 C G BRWD3 Missense_Mutation p.A1437P 0.45 deleterious(0) probably_damaging(0.934) TCGA-55-6978-01 10 52573648 52573648 A - A1CF Frame_Shift_Del p.L439* 0.11 TCGA-55-6978-01 11 4929446 4929446 C T OR51A7 Missense_Mutation p.P283S 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-55-6978-01 12 100811839 100811839 C T SLC17A8 Missense_Mutation p.R444C 0.07 deleterious(0.01) probably_damaging(1) TCGA-55-6978-01 12 49950989 49950989 C T KCNH3 Missense_Mutation p.H867Y 0.24 tolerated_low_confidence(0.11) benign(0) TCGA-55-6978-01 13 23910594 23910594 A T SACS Missense_Mutation p.I2474K 0.14 probably_damaging(0.997) TCGA-55-6978-01 15 102304738 102304738 T A DNM1P47 RNA 0.23 TCGA-55-6978-01 15 73617439 73617439 C T HCN4 Missense_Mutation p.R612H 0.13 deleterious(0.01) unknown(0) TCGA-55-6978-01 15 81575076 81575076 C T IL16 Missense_Mutation p.A393V 0.09 deleterious(0.04) probably_damaging(0.999) TCGA-55-6978-01 16 20384335 20384335 T C PDILT Missense_Mutation p.E264G 0.06 deleterious(0) possibly_damaging(0.876) TCGA-55-6978-01 17 44788352 44788352 T G NSF Missense_Mutation p.D498E 0.06 tolerated(1) benign(0) TCGA-55-6978-01 17 7593016 7593016 A G WRAP53 Silent p.E213E 0.21 TCGA-55-6978-01 18 28604352 28604352 T G DSC3 Silent p.A246A 0.17 TCGA-55-6978-01 19 17750669 17750669 T C UNC13A Missense_Mutation p.I946V 0.20 deleterious(0) benign(0.051) TCGA-55-6978-01 19 51729239 51729239 C G CD33 Missense_Mutation p.T200S 0.04 tolerated(0.05) benign(0.241) TCGA-55-6978-01 1 111726191 111726191 T G CEPT1 Missense_Mutation p.I371M 0.08 tolerated(0.06) benign(0.125) TCGA-55-6978-01 1 155294480 155294480 A G RUSC1 Intron 0.25 TCGA-55-6978-01 1 16065758 16065758 A G SLC25A34 Missense_Mutation p.I258V 0.15 tolerated(0.34) benign(0.009) TCGA-55-6978-01 1 207135834 207135834 G A FCAMR Nonsense_Mutation p.Q126* 0.19 TCGA-55-6978-01 20 31604887 31604887 G A BPIFB2 Missense_Mutation p.V186I 0.17 tolerated(0.19) benign(0.21) TCGA-55-6978-01 22 21340175 21340175 C T LZTR1 Silent p.C103C 0.15 TCGA-55-6978-01 22 46658152 46658152 C G PKDREJ Silent p.L356L 0.14 TCGA-55-6978-01 2 209271764 209271764 C T PTH2R 5'UTR 0.05 TCGA-55-6978-01 2 55481241 55481241 A C MTIF2 Missense_Mutation p.F200L 0.08 tolerated(1) benign(0) TCGA-55-6978-01 3 9477424 9477424 G C SETD5 Missense_Mutation p.S134T 0.25 deleterious(0) probably_damaging(0.991) TCGA-55-6978-01 4 1843351 1843351 C T LETM1 Missense_Mutation p.R106H 0.09 tolerated(0.06) benign(0.117) TCGA-55-6978-01 4 502694 502694 C T PIGG Missense_Mutation p.A279V 0.14 deleterious(0) probably_damaging(0.962) TCGA-55-6978-01 5 133873705 133873705 A C JADE2 Silent p.R29R 0.12 TCGA-55-6978-01 5 150947463 150947463 A - FAT2 Frame_Shift_Del p.Y344Ifs*39 0.11 TCGA-55-6978-01 5 168134994 168134994 G A SLIT3 Missense_Mutation p.P944L 0.13 deleterious(0.03) possibly_damaging(0.735) TCGA-55-6978-01 5 179321595 179321595 T C TBC1D9B Missense_Mutation p.N123S 0.05 tolerated(0.45) benign(0.009) TCGA-55-6978-01 6 110300677 110300677 C T GPR6 Missense_Mutation p.A121V 0.20 deleterious(0) probably_damaging(0.993) TCGA-55-6978-01 6 29640722 29640722 C A ZFP57 Missense_Mutation p.C389F 0.21 deleterious(0) probably_damaging(0.999) TCGA-55-6978-01 7 116412044 116412044 G C MET Splice_Site p.X1028_splice 0.17 TCGA-55-6978-01 7 148947288 148947288 C G ZNF212 Silent p.S21S 0.09 TCGA-55-6978-01 7 150878359 150878359 G A ASB10 Silent p.D257D 0.14 TCGA-55-6978-01 7 83119449 83119449 A T SEMA3E Missense_Mutation p.I86N 0.12 deleterious(0) possibly_damaging(0.886) TCGA-55-6978-01 8 73848601 73848601 G C KCNB2 Missense_Mutation p.L337F 0.05 deleterious(0) probably_damaging(0.986) TCGA-55-6979-01 10 123843455 123843455 G T TACC2 Missense_Mutation p.E480D 0.18 benign(0.293) TCGA-55-6979-01 11 117186290 117186290 G C BACE1 Silent p.G74G 0.14 TCGA-55-6979-01 11 121461839 121461839 C G SORL1 Missense_Mutation p.S1448C 0.06 deleterious(0) probably_damaging(0.997) TCGA-55-6979-01 11 3849357 3849357 G C RHOG Missense_Mutation p.I4M 0.17 tolerated(0.05) possibly_damaging(0.878) TCGA-55-6979-01 11 45275886 45275886 G T SYT13 Missense_Mutation p.P160H 0.15 deleterious(0) probably_damaging(0.996) TCGA-55-6979-01 11 56510702 56510702 C A OR9G4 Missense_Mutation p.A196S 0.17 tolerated(0.06) possibly_damaging(0.633) TCGA-55-6979-01 11 59210711 59210711 C A OR5A1 Missense_Mutation p.P24T 0.17 deleterious(0.03) possibly_damaging(0.616) TCGA-55-6979-01 11 59210712 59210712 C A OR5A1 Missense_Mutation p.P24Q 0.19 deleterious(0.03) possibly_damaging(0.774) TCGA-55-6979-01 11 59224585 59224585 G C OR4D6 Missense_Mutation p.C51S 0.20 tolerated(0.53) benign(0.001) TCGA-55-6979-01 11 60781476 60781476 C G CD6 Missense_Mutation p.I459M 0.08 deleterious(0.03) benign(0.139) TCGA-55-6979-01 11 61105499 61105499 C T DAK Silent p.L30L 0.07 TCGA-55-6979-01 11 7437318 7437318 C G SYT9 Missense_Mutation p.P364A 0.06 deleterious(0) probably_damaging(0.991) TCGA-55-6979-01 11 89768527 89768527 G C TRIM49C Missense_Mutation p.V50L 0.17 deleterious(0.02) benign(0.004) TCGA-55-6979-01 12 100691891 100691891 A G SCYL2 Missense_Mutation p.I140V 0.29 tolerated(1) benign(0.001) TCGA-55-6979-01 12 108917149 108917149 T C SART3 3'UTR 0.09 TCGA-55-6979-01 12 111779685 111779685 C A CUX2 Missense_Mutation p.L1163M 0.18 deleterious(0) benign(0.12) TCGA-55-6979-01 12 18892101 18892101 A G CAPZA3 Silent p.%3D 0.17 TCGA-55-6979-01 12 1965249 1965249 G - CACNA2D4 Frame_Shift_Del p.P694Qfs*9 0.11 TCGA-55-6979-01 12 2977809 2977809 G C FOXM1 Missense_Mutation p.R256G 0.15 deleterious(0.04) possibly_damaging(0.847) TCGA-55-6979-01 12 46320526 46320526 C G SCAF11 Missense_Mutation p.K986N 0.09 deleterious(0) possibly_damaging(0.675) TCGA-55-6979-01 12 6973060 6973060 G A USP5 Missense_Mutation p.R674H 0.30 deleterious(0) probably_damaging(0.988) TCGA-55-6979-01 13 34399957 34399957 C G RFC3 Missense_Mutation p.Q109E 0.11 deleterious(0) possibly_damaging(0.689) TCGA-55-6979-01 13 37015312 37015312 C G CCNA1 Missense_Mutation p.L386V 0.07 tolerated(1) benign(0.056) TCGA-55-6979-01 14 107282984 107282984 C A IGHV7-81 Missense_Mutation p.M53I 0.12 tolerated(0.48) benign(0.02) TCGA-55-6979-01 14 20666236 20666236 C T OR11G2 Missense_Mutation p.L248F 0.13 deleterious(0.02) benign(0.014) TCGA-55-6979-01 14 20763529 20763529 C A TTC5 Missense_Mutation p.G334C 0.18 deleterious(0.01) probably_damaging(0.987) TCGA-55-6979-01 14 58932631 58932631 A C KIAA0586 Missense_Mutation p.H766P 0.19 tolerated(0.09) possibly_damaging(0.735) TCGA-55-6979-01 14 72055435 72055435 C G SIPA1L1 Silent p.L282L 0.09 TCGA-55-6979-01 14 81964260 81964260 A G SEL1L Silent p.A368A 0.06 TCGA-55-6979-01 14 96993794 96993794 C T PAPOLA Missense_Mutation p.A120V 0.11 tolerated(0.1) benign(0.178) TCGA-55-6979-01 15 23931651 23931651 C A NDN Missense_Mutation p.E238D 0.13 tolerated(0.26) benign(0.041) TCGA-55-6979-01 15 34640781 34640781 G A NUTM1 Missense_Mutation p.V210I 0.10 deleterious(0.02) probably_damaging(0.981) TCGA-55-6979-01 15 43653495 43653495 C A ZSCAN29 Missense_Mutation p.A779S 0.09 tolerated(0.41) probably_damaging(0.999) TCGA-55-6979-01 16 11114107 11114107 C T CLEC16A Missense_Mutation p.S454F 0.13 deleterious(0.03) benign(0.067) TCGA-55-6979-01 16 19548753 19548753 C G CCP110 Missense_Mutation p.L588V 0.04 deleterious(0) probably_damaging(0.978) TCGA-55-6979-01 16 24268164 24268164 C A CACNG3 Missense_Mutation p.T30K 0.18 deleterious(0) probably_damaging(1) TCGA-55-6979-01 16 31045347 31045347 C T STX4 Missense_Mutation p.S15L 0.18 deleterious(0.03) possibly_damaging(0.73) TCGA-55-6979-01 16 31419778 31419778 C G ITGAD Missense_Mutation p.H348D 0.08 tolerated(0.2) benign(0.01) TCGA-55-6979-01 16 7743333 7743333 G C RBFOX1 Intron 0.08 TCGA-55-6979-01 17 18694214 18694215 CA - TVP23B Frame_Shift_Del p.P34Rfs*41 0.18 TCGA-55-6979-01 17 26961982 26961982 C T KIAA0100 Missense_Mutation p.E875K 0.04 tolerated(1) benign(0) TCGA-55-6979-01 17 27849370 27849370 G C TAOK1 Missense_Mutation p.E661Q 0.09 deleterious(0.04) possibly_damaging(0.466) TCGA-55-6979-01 17 33592926 33592926 G C SLFN5 3'UTR 0.12 TCGA-55-6979-01 17 39405983 39405983 G T KRTAP9-4 Missense_Mutation p.C4F 0.11 deleterious(0) unknown(0) TCGA-55-6979-01 17 43922672 43922672 C G SPPL2C Missense_Mutation p.L134V 0.13 tolerated(1) benign(0.122) TCGA-55-6979-01 17 48262855 48262855 G A COL1A1 3'UTR 0.07 TCGA-55-6979-01 17 57278969 57278969 A T PRR11 Missense_Mutation p.S354C 0.20 deleterious(0) probably_damaging(0.926) TCGA-55-6979-01 17 7578499 7578499 T A TP53 Missense_Mutation p.Q144L 0.18 tolerated(0.11) probably_damaging(0.991) TCGA-55-6979-01 17 76570975 76570975 C A DNAH17 Silent p.T55T 0.30 TCGA-55-6979-01 18 29340372 29340372 G C SLC25A52 Missense_Mutation p.L95V 0.08 deleterious(0.01) possibly_damaging(0.686) TCGA-55-6979-01 18 43249420 43249420 C T SLC14A2 Missense_Mutation p.S729F 0.10 deleterious(0) possibly_damaging(0.739) TCGA-55-6979-01 18 77895022 77895022 C G ADNP2 Missense_Mutation p.L576V 0.11 tolerated(0.09) benign(0.019) TCGA-55-6979-01 19 2405397 2405397 G A TMPRSS9 Silent p.R198R 0.12 TCGA-55-6979-01 19 3760138 3760138 C A APBA3 Missense_Mutation p.G42V 0.21 deleterious_low_confidence(0.02) benign(0.282) TCGA-55-6979-01 19 40316653 40316653 G A DYRK1B Missense_Mutation p.S531F 0.39 deleterious_low_confidence(0) possibly_damaging(0.83) TCGA-55-6979-01 19 42396885 42396885 G T ARHGEF1 Silent p.V208V 0.45 TCGA-55-6979-01 19 43421914 43421914 G T PSG6 Missense_Mutation p.Q11K 0.33 tolerated(0.26) benign(0.044) TCGA-55-6979-01 19 50473210 50473210 G T SIGLEC16 RNA 0.08 TCGA-55-6979-01 19 9048380 9048380 G T MUC16 Missense_Mutation p.A11084D 0.07 benign(0.092) TCGA-55-6979-01 1 103468337 103468337 C G COL11A1 Missense_Mutation p.G670A 0.09 unknown(0) TCGA-55-6979-01 1 110257749 110257749 C - GSTM5 Intron 0.13 TCGA-55-6979-01 1 1117798 1117798 G C TTLL10 Missense_Mutation p.E296D 0.08 tolerated(0.16) benign(0.232) TCGA-55-6979-01 1 149884837 149884837 C A SV2A Missense_Mutation p.V186L 0.18 deleterious(0.05) probably_damaging(0.999) TCGA-55-6979-01 1 150550957 150550957 C G MCL1 Silent p.R233R 0.06 TCGA-55-6979-01 1 152323904 152323904 T A FLG2 Missense_Mutation p.T2120S 0.17 possibly_damaging(0.715) TCGA-55-6979-01 1 152732194 152732194 C A KPRP Missense_Mutation p.Q44K 0.19 deleterious(0.03) benign(0.223) TCGA-55-6979-01 1 156255160 156255160 G C TMEM79 Missense_Mutation p.R48T 0.08 tolerated_low_confidence(0.16) benign(0.002) TCGA-55-6979-01 1 156873742 156873742 C A PEAR1 Silent p.L8L 0.13 TCGA-55-6979-01 1 157494111 157494111 G C FCRL5 Missense_Mutation p.L733V 0.17 tolerated(0.09) probably_damaging(0.971) TCGA-55-6979-01 1 16256410 16256410 C T SPEN Silent p.S1225S 0.12 TCGA-55-6979-01 1 19545750 19545750 G C EMC1 3'UTR 0.10 TCGA-55-6979-01 1 205633646 205633646 C A SLC45A3 Missense_Mutation p.G47W 0.16 deleterious(0) probably_damaging(1) TCGA-55-6979-01 1 226109657 226109657 C A PYCR2 Missense_Mutation p.Q147H 0.17 tolerated(0.09) benign(0.139) TCGA-55-6979-01 1 228466415 228466415 G T OBSCN Silent p.P2724P 0.17 TCGA-55-6979-01 1 236647445 236647445 G A EDARADD 3'Flank 0.19 TCGA-55-6979-01 1 248343825 248343825 G T OR2M2 Nonsense_Mutation p.E180* 0.10 TCGA-55-6979-01 1 248616145 248616145 C A OR2T2 Missense_Mutation p.T16K 0.08 deleterious(0) benign(0.001) TCGA-55-6979-01 1 86951204 86951204 G C CLCA1 Missense_Mutation p.R305T 0.04 deleterious(0) probably_damaging(0.999) TCGA-55-6979-01 20 13868493 13868493 A C SEL1L2 Missense_Mutation p.Y223D 0.04 deleterious(0) probably_damaging(0.999) TCGA-55-6979-01 20 33026420 33026420 C T ITCH Silent p.P262P 0.08 TCGA-55-6979-01 20 56089661 56089661 C G CTCFL Silent p.R439R 0.08 TCGA-55-6979-01 20 8628584 8628584 C A PLCB1 Missense_Mutation p.R168S 0.14 deleterious(0.02) benign(0.052) TCGA-55-6979-01 21 38853104 38853104 G T DYRK1A Missense_Mutation p.L164F 0.14 deleterious(0.02) probably_damaging(0.96) TCGA-55-6979-01 21 46314930 46314930 C G ITGB2 Missense_Mutation p.E347Q 0.07 tolerated(0.17) benign(0.009) TCGA-55-6979-01 22 23165510 23165510 C T IGLV2-8 Silent p.P27P 0.10 TCGA-55-6979-01 22 35719782 35719782 C T TOM1 Nonsense_Mutation p.Q175* 0.15 TCGA-55-6979-01 22 36886232 36886232 C G FOXRED2 Silent p.V626V 0.07 TCGA-55-6979-01 22 46752863 46752863 A G TRMU Missense_Mutation p.D409G 0.08 tolerated_low_confidence(0.06) benign(0.05) TCGA-55-6979-01 2 10267088 10267088 C - RRM2 Frame_Shift_Del p.A279Vfs*8 0.11 TCGA-55-6979-01 2 136558235 136558235 G C LCT Missense_Mutation p.A1603G 0.22 tolerated(0.17) benign(0.071) TCGA-55-6979-01 2 136570244 136570244 G T LCT Missense_Mutation p.P664T 0.15 deleterious(0) probably_damaging(1) TCGA-55-6979-01 2 143799696 143799696 C G KYNU Silent p.T451T 0.09 TCGA-55-6979-01 2 158622640 158622640 C T ACVR1 Missense_Mutation p.E287K 0.10 deleterious(0) probably_damaging(0.927) TCGA-55-6979-01 2 179574318 179574318 C A TTN Silent p.L9576L 0.16 TCGA-55-6979-01 2 179613587 179613587 C A TTN Intron 0.12 TCGA-55-6979-01 2 201822819 201822819 T A ORC2 Nonsense_Mutation p.K10* 0.09 TCGA-55-6979-01 2 207426992 207426992 A T ADAM23 Missense_Mutation p.Q440H 0.22 tolerated(0.55) probably_damaging(0.999) TCGA-55-6979-01 2 217303159 217303159 T A SMARCAL1 Missense_Mutation p.L554H 0.24 deleterious(0) probably_damaging(1) TCGA-55-6979-01 2 219130551 219130551 C G AAMP Intron 0.14 TCGA-55-6979-01 2 234238166 234238166 G T SAG Missense_Mutation p.V226L 0.27 deleterious(0) probably_damaging(0.953) TCGA-55-6979-01 2 242047654 242047654 C G PASK Missense_Mutation p.E1206Q 0.08 tolerated(0.18) possibly_damaging(0.596) TCGA-55-6979-01 2 242203865 242203865 G A HDLBP Nonsense_Mutation p.Q78* 0.22 TCGA-55-6979-01 2 27449776 27449776 C T CAD Missense_Mutation p.L745F 0.14 deleterious(0.03) benign(0.216) TCGA-55-6979-01 2 71365639 71365639 C G MPHOSPH10 Missense_Mutation p.S373C 0.13 deleterious(0.01) possibly_damaging(0.841) TCGA-55-6979-01 2 71615766 71615766 G C ZNF638 Intron 0.20 TCGA-55-6979-01 2 71653619 71653619 A C ZNF638 Missense_Mutation p.E1540D 0.13 deleterious(0.03) probably_damaging(0.996) TCGA-55-6979-01 2 71653631 71653631 G T ZNF638 Silent p.V1544V 0.10 TCGA-55-6979-01 2 97498354 97498354 C G CNNM3 3'UTR 0.14 TCGA-55-6979-01 3 105459348 105459348 T C CBLB Missense_Mutation p.R325G 0.20 deleterious(0) probably_damaging(0.999) TCGA-55-6979-01 3 112710081 112710081 G C GTPBP8 Missense_Mutation p.A79P 0.12 tolerated(0.18) benign(0.342) TCGA-55-6979-01 3 120134836 120134836 C A FSTL1 Silent p.V34V 0.06 TCGA-55-6979-01 3 151046307 151046307 C T P2RY13 Silent p.T179T 0.10 TCGA-55-6979-01 3 156175289 156175289 C G KCNAB1 Silent p.L135L 0.12 TCGA-55-6979-01 3 17053011 17053011 G T PLCL2 Missense_Mutation p.G599C 0.20 deleterious(0) probably_damaging(1) TCGA-55-6979-01 3 196630482 196630482 G A SENP5 Splice_Site p.X628_splice 0.10 TCGA-55-6979-01 3 3067833 3067833 G C CNTN4 Missense_Mutation p.G512R 0.10 deleterious(0) probably_damaging(1) TCGA-55-6979-01 3 32754764 32754764 A G CNOT10 Missense_Mutation p.Y219C 0.09 tolerated(0.11) probably_damaging(1) TCGA-55-6979-01 3 52526236 52526236 G T NISCH Missense_Mutation p.R1418L 0.21 deleterious(0) probably_damaging(0.931) TCGA-55-6979-01 3 64084971 64084971 C G PRICKLE2 Missense_Mutation p.R764P 0.12 tolerated(0.17) benign(0.019) TCGA-55-6979-01 3 77542452 77542452 T C ROBO2 Missense_Mutation p.V258A 0.07 tolerated(0.26) benign(0.418) TCGA-55-6979-01 3 96706503 96706503 C G EPHA6 Missense_Mutation p.I260M 0.05 tolerated(0.07) possibly_damaging(0.864) TCGA-55-6979-01 3 99895214 99895214 G C CMSS1 Missense_Mutation p.W237C 0.06 deleterious(0) possibly_damaging(0.566) TCGA-55-6979-01 4 11401343 11401343 T A HS3ST1 Missense_Mutation p.Y96F 0.19 tolerated(0.13) benign(0.047) TCGA-55-6979-01 4 115748939 115748939 G C NDST4 3'UTR 0.44 TCGA-55-6979-01 4 154547372 154547372 T C KIAA0922 Silent p.N1373N 0.07 TCGA-55-6979-01 4 159772518 159772518 C G FNIP2 Missense_Mutation p.S258C 0.10 deleterious(0.01) probably_damaging(0.952) TCGA-55-6979-01 4 48178124 48178124 G T TEC Missense_Mutation p.P73H 0.15 deleterious(0) probably_damaging(1) TCGA-55-6979-01 5 140769504 140769504 G C PCDHGB4 Missense_Mutation p.E685Q 0.05 deleterious(0.04) benign(0.378) TCGA-55-6979-01 5 177580545 177580545 C G NHP2 Missense_Mutation p.Q59H 0.07 tolerated(0.41) benign(0.033) TCGA-55-6979-01 5 33989575 33989575 G C AMACR Missense_Mutation p.Q258E 0.05 deleterious(0.02) probably_damaging(0.971) TCGA-55-6979-01 5 3600760 3600760 G T IRX1 Missense_Mutation p.Q450H 0.11 tolerated(0.06) benign(0.133) TCGA-55-6979-01 5 41862832 41862832 G A OXCT1 Silent p.S33S 0.11 TCGA-55-6979-01 6 106968959 106968959 G T AIM1 Silent p.P884P 0.13 TCGA-55-6979-01 6 107419764 107419764 C T BEND3 Silent p.L77L 0.12 TCGA-55-6979-01 6 116442718 116442718 C G COL10A1 Missense_Mutation p.Q187H 0.11 tolerated(0.11) unknown(0) TCGA-55-6979-01 6 126249891 126249891 G C NCOA7 Missense_Mutation p.D935H 0.08 deleterious(0) probably_damaging(0.998) TCGA-55-6979-01 6 139251120 139251120 G A REPS1 Silent p.S417S 0.11 TCGA-55-6979-01 6 30570127 30570127 G T PPP1R10 Missense_Mutation p.H767N 0.12 deleterious_low_confidence(0) unknown(0) TCGA-55-6979-01 6 42146104 42146104 C G GUCA1A Missense_Mutation p.F96L 0.10 deleterious(0) probably_damaging(0.982) TCGA-55-6979-01 6 6182302 6182302 G T F13A1 Missense_Mutation p.H460N 0.19 tolerated(0.06) probably_damaging(0.936) TCGA-55-6979-01 6 83839206 83839206 C T DOPEY1 Missense_Mutation p.R774C 0.11 tolerated(0.21) benign(0) TCGA-55-6979-01 6 90578514 90578514 G C CASP8AP2 RNA 0.12 TCGA-55-6979-01 7 100030679 100030679 C G MEPCE Missense_Mutation p.I603M 0.05 tolerated(0.53) possibly_damaging(0.587) TCGA-55-6979-01 7 105146653 105146653 T A PUS7 Missense_Mutation p.I156F 0.22 tolerated(0.08) benign(0.001) TCGA-55-6979-01 7 108154644 108154644 C T PNPLA8 Missense_Mutation p.E384K 0.05 deleterious(0) probably_damaging(0.973) TCGA-55-6979-01 7 140494148 140494148 G C BRAF Missense_Mutation p.P367R 0.08 deleterious(0) probably_damaging(0.999) TCGA-55-6979-01 7 141896615 141896615 G C RP11-1220K2.2 Missense_Mutation p.R1544T 0.31 benign(0.062) TCGA-55-6979-01 7 142139373 142139373 G T TRBV7-6 Missense_Mutation p.F84L 0.10 deleterious(0.03) possibly_damaging(0.519) TCGA-55-6979-01 7 23401202 23401202 C T IGF2BP3 Missense_Mutation p.E118K 0.05 deleterious(0.03) benign(0.326) TCGA-55-6979-01 7 27211464 27211464 G A HOXA10 3'UTR 0.07 TCGA-55-6979-01 7 47897302 47897302 C A PKD1L1 Silent p.G1497G 0.19 TCGA-55-6979-01 8 113364700 113364700 C A CSMD3 Missense_Mutation p.R2067I 0.09 deleterious(0) possibly_damaging(0.685) TCGA-55-6979-01 8 124440236 124440236 T G WDYHV1 Silent p.A52A 0.05 TCGA-55-6979-01 8 125072866 125072866 C G FER1L6 Missense_Mutation p.C1021W 0.11 deleterious(0) probably_damaging(1) TCGA-55-6979-01 8 131414163 131414163 G T ASAP1 Silent p.S9S 0.20 TCGA-55-6979-01 8 131414164 131414164 G T ASAP1 Missense_Mutation p.S9Y 0.23 deleterious_low_confidence(0.04) unknown(0) TCGA-55-6979-01 8 35406824 35406824 G A UNC5D Missense_Mutation p.E40K 0.20 tolerated(0.16) benign(0.058) TCGA-55-6979-01 8 38250063 38250063 C A LETM2 Intron 0.11 TCGA-55-6979-01 8 73479988 73479988 C A KCNB2 Missense_Mutation p.P7T 0.07 tolerated_low_confidence(0.56) benign(0.017) TCGA-55-6979-01 8 8235009 8235009 C A SGK223 Missense_Mutation p.G304C 0.33 benign(0.436) TCGA-55-6979-01 9 114304223 114304223 G A ZNF483 Silent p.K336K 0.05 TCGA-55-6979-01 9 124076248 124076248 G A GSN Missense_Mutation p.E285K 0.11 tolerated(0.66) benign(0.004) TCGA-55-6979-01 9 125673231 125673231 T C ZBTB6 Missense_Mutation p.N374S 0.12 deleterious(0) probably_damaging(0.985) TCGA-55-6979-01 9 131370516 131370516 C G SPTAN1 Missense_Mutation p.I1484M 0.07 tolerated(0.35) probably_damaging(0.988) TCGA-55-6979-01 9 71080103 71080103 G - PGM5 Frame_Shift_Del p.E381Kfs*67 0.22 TCGA-55-6979-01 X 118723544 118723544 C A NKRF Missense_Mutation p.R630L 0.13 tolerated(0.48) benign(0.121) TCGA-55-6979-01 X 122756691 122756691 G A THOC2 Nonsense_Mutation p.Q1235* 0.26 TCGA-55-6979-01 X 122765704 122765704 C A THOC2 Splice_Site p.X773_splice 0.14 TCGA-55-6979-01 X 123805647 123805647 C A TENM1 Missense_Mutation p.V352F 0.14 tolerated(0.39) possibly_damaging(0.474) TCGA-55-6979-01 X 152734615 152734615 C A HAUS7 Missense_Mutation p.W81C 0.12 deleterious(0) probably_damaging(1) TCGA-55-6979-01 X 152734616 152734616 C A HAUS7 Missense_Mutation p.W81L 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-6979-01 X 2161228 2161228 C A DHRSX Missense_Mutation p.A214S 0.19 deleterious(0) probably_damaging(0.998) TCGA-55-6979-01 X 21670428 21670428 G C CNKSR2 Missense_Mutation p.R965T 0.08 deleterious(0) benign(0.275) TCGA-55-6979-01 X 47104820 47104820 C G USP11 Missense_Mutation p.R780G 0.13 tolerated(0.08) possibly_damaging(0.546) TCGA-55-6979-01 X 69640065 69640065 A C KIF4A Missense_Mutation p.N1217H 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.897) TCGA-55-6979-01 X 75650135 75650135 G C MAGEE1 Missense_Mutation p.W604C 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-6979-01 X 91642830 91642830 A T PCDH11X Missense_Mutation p.T1081S 0.10 tolerated(1) benign(0.06) TCGA-55-6980-01 11 1271623 1271623 A G MUC5B Missense_Mutation p.T4505A 0.06 benign(0.001) TCGA-55-6980-01 11 67218772 67218772 T A GPR152 3'UTR 0.14 TCGA-55-6980-01 12 993965 993965 C T WNK1 Missense_Mutation p.T1332I 0.10 deleterious(0.04) benign(0.105) TCGA-55-6980-01 14 64519395 64519395 A G SYNE2 Missense_Mutation p.I2922V 0.25 benign(0.001) TCGA-55-6980-01 17 7192945 7192945 G A YBX2 Silent p.P316P 0.24 TCGA-55-6980-01 17 7578503 7578518 CAGGGCAGGTCTTGGC - TP53 Frame_Shift_Del p.A138Cfs*27 0.24 TCGA-55-6980-01 18 14524916 14524916 G C POTEC Missense_Mutation p.P398R 0.06 tolerated(0.08) benign(0.254) TCGA-55-6980-01 18 46284770 46284771 - C CTIF Frame_Shift_Ins p.E356Rfs*6 0.10 TCGA-55-6980-01 18 67365760 67365760 T A DOK6 Missense_Mutation p.V177E 0.08 deleterious(0) benign(0.125) TCGA-55-6980-01 19 40587729 40587729 G C ZNF780A Missense_Mutation p.P78A 0.10 tolerated(0.08) benign(0.138) TCGA-55-6980-01 1 20827839 20827839 C T MUL1 Missense_Mutation p.V135M 0.13 tolerated(0.14) benign(0.021) TCGA-55-6980-01 1 85733383 85733383 T G BCL10 Missense_Mutation p.E210A 0.05 deleterious(0.01) benign(0.083) TCGA-55-6980-01 21 27840918 27840918 C T CYYR1 Missense_Mutation p.E123K 0.28 deleterious_low_confidence(0.03) benign(0.197) TCGA-55-6980-01 22 50721832 50721832 C T PLXNB2 Silent p.G871G 0.12 TCGA-55-6980-01 2 87085348 87085348 T G CD8B Missense_Mutation p.T79P 0.20 tolerated(0.07) benign(0.046) TCGA-55-6980-01 2 88472698 88472698 C T THNSL2 Missense_Mutation p.A10V 0.08 tolerated(1) benign(0.005) TCGA-55-6980-01 5 179757728 179757728 G A GFPT2 Missense_Mutation p.T169M 0.10 deleterious(0.01) benign(0.099) TCGA-55-6980-01 7 100391747 100391747 C T ZAN Intron 0.12 TCGA-55-6980-01 7 55241679 55241681 AAC - EGFR In_Frame_Del p.E709_T710delinsD 0.26 TCGA-55-6981-01 10 101292883 101292883 G A NKX2-3 5'UTR 0.09 TCGA-55-6981-01 10 124339221 124339221 T C DMBT1 Silent p.N269N 0.07 TCGA-55-6981-01 10 18331809 18331809 T C SLC39A12 3'UTR 0.14 TCGA-55-6981-01 10 79779004 79779004 T C POLR3A Missense_Mutation p.N402S 0.15 tolerated(0.05) benign(0.005) TCGA-55-6981-01 11 46880755 46880755 G A LRP4 Missense_Mutation p.R1833W 0.24 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-55-6981-01 11 49597962 49597962 G A RP11-707M1.1 RNA 0.14 TCGA-55-6981-01 12 109309580 109309580 G C SVOP Silent p.L408L 0.19 TCGA-55-6981-01 12 111099246 111099246 G A HVCN1 Missense_Mutation p.T10I 0.16 deleterious_low_confidence(0.03) benign(0.432) TCGA-55-6981-01 12 58145430 58145430 C A CDK4 Missense_Mutation p.R24L 0.28 deleterious(0) benign(0.232) TCGA-55-6981-01 12 95228798 95228798 G A MIR492 3'Flank 0.27 TCGA-55-6981-01 13 60545013 60545013 G C DIAPH3 Missense_Mutation p.I644M 0.12 tolerated(0.05) possibly_damaging(0.722) TCGA-55-6981-01 14 24652208 24652208 C T IPO4 Missense_Mutation p.V799M 0.20 tolerated(0.3) benign(0.003) TCGA-55-6981-01 14 31077238 31077238 A G G2E3 Missense_Mutation p.D488G 0.09 deleterious(0.01) probably_damaging(1) TCGA-55-6981-01 14 61446337 61446337 T C TRMT5 Silent p.T93T 0.07 TCGA-55-6981-01 14 96811066 96811066 A C ATG2B Missense_Mutation p.I169R 0.17 deleterious(0) benign(0.347) TCGA-55-6981-01 16 24582923 24582926 AAAT - RBBP6 Frame_Shift_Del p.K1514Qfs*47 0.17 TCGA-55-6981-01 16 28855408 28855408 G A TUFM Missense_Mutation p.H313Y 0.15 deleterious(0.01) probably_damaging(0.939) TCGA-55-6981-01 16 675984 675984 C T RAB40C Missense_Mutation p.A143V 0.25 tolerated(0.09) possibly_damaging(0.47) TCGA-55-6981-01 16 80718848 80718848 G C CDYL2 Nonsense_Mutation p.S68* 0.24 TCGA-55-6981-01 17 27208290 27208290 G A FLOT2 Missense_Mutation p.R340W 0.18 deleterious(0) possibly_damaging(0.677) TCGA-55-6981-01 17 48655855 48655855 A G CACNA1G Missense_Mutation p.Y744C 0.08 deleterious(0) probably_damaging(0.999) TCGA-55-6981-01 18 29044158 29044158 C T DSG3 Nonsense_Mutation p.R362* 0.23 TCGA-55-6981-01 19 54290965 54290965 G A MIR371A RNA 0.12 TCGA-55-6981-01 19 55344253 55344253 G T KIR3DL1 3'Flank 0.05 TCGA-55-6981-01 1 1158663 1158663 C T SDF4 Missense_Mutation p.A180T 0.15 tolerated(0.2) benign(0.065) TCGA-55-6981-01 1 167654689 167654689 C T RCSD1 Missense_Mutation p.P47L 0.11 deleterious(0) probably_damaging(0.916) TCGA-55-6981-01 1 175362964 175362964 C T TNR Silent p.E436E 0.08 TCGA-55-6981-01 1 202391825 202391825 C T PPP1R12B Missense_Mutation p.P167L 0.19 deleterious(0.04) possibly_damaging(0.476) TCGA-55-6981-01 1 25229017 25229017 C A RUNX3 Missense_Mutation p.A296S 0.28 tolerated(0.52) benign(0.047) TCGA-55-6981-01 20 32378868 32378868 G A ZNF341 Missense_Mutation p.A697T 0.12 tolerated(0.32) benign(0.049) TCGA-55-6981-01 20 37643539 37643539 C T DHX35 Missense_Mutation p.S455L 0.11 tolerated(0.82) benign(0.02) TCGA-55-6981-01 20 44691001 44691001 G C NCOA5 Missense_Mutation p.Q560E 0.11 deleterious(0.02) possibly_damaging(0.626) TCGA-55-6981-01 21 43522353 43522353 G A UMODL1 Missense_Mutation p.E422K 0.05 deleterious(0.03) probably_damaging(0.957) TCGA-55-6981-01 21 47360050 47360050 G A PCBP3 Missense_Mutation p.R339H 0.19 deleterious(0) probably_damaging(0.992) TCGA-55-6981-01 22 37524438 37524438 C T IL2RB Missense_Mutation p.E452K 0.45 tolerated(0.16) benign(0.27) TCGA-55-6981-01 2 108488724 108488724 G C RGPD4 Missense_Mutation p.G1422R 0.05 deleterious(0) probably_damaging(0.999) TCGA-55-6981-01 2 120439204 120439204 G C TMEM177 Missense_Mutation p.A259P 0.11 deleterious(0.02) probably_damaging(0.962) TCGA-55-6981-01 2 162036222 162036222 C T TANK Missense_Mutation p.R17W 0.11 deleterious(0) probably_damaging(1) TCGA-55-6981-01 2 183584806 183584806 C T DNAJC10 Missense_Mutation p.R93W 0.10 deleterious(0) probably_damaging(1) TCGA-55-6981-01 2 219232538 219232538 C T C2orf62 Nonsense_Mutation p.Q339* 0.08 TCGA-55-6981-01 2 227872966 227872966 T C COL4A4 Missense_Mutation p.N1526S 0.08 unknown(0) TCGA-55-6981-01 2 234545643 234545643 A G UGT1A10 Missense_Mutation p.K159E 0.16 tolerated(1) possibly_damaging(0.836) TCGA-55-6981-01 2 241569479 241569479 T G GPR35 Missense_Mutation p.L68R 0.09 deleterious(0) probably_damaging(0.992) TCGA-55-6981-01 2 61149499 61149499 G T REL Missense_Mutation p.E563D 0.17 tolerated_low_confidence(1) benign(0.012) TCGA-55-6981-01 3 38674694 38674694 G A SCN5A Silent p.G35G 0.16 TCGA-55-6981-01 3 49692949 49692949 C T BSN Missense_Mutation p.T1987I 0.12 unknown(0) TCGA-55-6981-01 4 118006474 118006474 T A TRAM1L1 Missense_Mutation p.I26F 0.18 deleterious(0.02) benign(0.172) TCGA-55-6981-01 4 1961303 1961303 G C WHSC1 Missense_Mutation p.E1031Q 0.11 tolerated(0.23) benign(0.11) TCGA-55-6981-01 4 48887482 48887482 A G OCIAD2 3'UTR 0.18 TCGA-55-6981-01 5 140572121 140572121 C A PCDHB10 5'UTR 0.10 TCGA-55-6981-01 5 150931118 150931118 G A FAT2 Silent p.I1402I 0.10 TCGA-55-6981-01 5 50683467 50683467 C T ISL1 Missense_Mutation p.A121V 0.18 tolerated(0.18) benign(0.097) TCGA-55-6981-01 5 9630087 9630087 C A TAS2R1 Missense_Mutation p.G20W 0.23 deleterious(0) probably_damaging(1) TCGA-55-6981-01 6 132910007 132910007 C T TAAR5 Missense_Mutation p.M273I 0.10 tolerated(1) benign(0.016) TCGA-55-6981-01 6 32918314 32918314 T C HLA-DMA Missense_Mutation p.K119E 0.04 tolerated(0.27) benign(0.044) TCGA-55-6981-01 7 100843556 100843556 G A MOGAT3 Missense_Mutation p.R83W 0.12 tolerated(1) benign(0) TCGA-55-6981-01 7 30491515 30491515 G A NOD1 Silent p.P506P 0.10 TCGA-55-6981-01 7 44687313 44687313 G T OGDH Missense_Mutation p.D158Y 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-55-6981-01 7 55242468 55242482 ATTAAGAGAAGCAAC - EGFR In_Frame_Del p.L747_T751del 0.60 TCGA-55-6981-01 8 104331000 104331000 G A FZD6 Silent p.E120E 0.12 TCGA-55-6981-01 8 39564352 39564352 G A ADAM18 Missense_Mutation p.R649K 0.25 tolerated(0.85) benign(0.002) TCGA-55-6981-01 8 95538800 95538800 G - KIAA1429 Frame_Shift_Del p.H558Ifs*16 0.22 TCGA-55-6981-01 9 109773236 109773236 G C ZNF462 Missense_Mutation p.K2482N 0.22 benign(0.002) TCGA-55-6981-01 9 127969995 127969995 A G RABEPK Missense_Mutation p.D69G 0.11 tolerated(0.06) probably_damaging(0.96) TCGA-55-6981-01 9 132484528 132484528 G A PRRX2 Missense_Mutation p.G220D 0.11 tolerated(0.08) benign(0.08) TCGA-55-6981-01 X 122598956 122598956 G C GRIA3 Missense_Mutation p.A773P 0.06 tolerated(1) benign(0.049) TCGA-55-6982-01 10 108466321 108466321 C G SORCS1 Silent p.P405P 0.08 TCGA-55-6982-01 10 124457724 124457724 C A C10orf120 Missense_Mutation p.G178V 0.15 tolerated(0.08) possibly_damaging(0.483) TCGA-55-6982-01 10 52389558 52389558 G C RP11-50E11.3 RNA 0.13 TCGA-55-6982-01 10 63212759 63212759 C G TMEM26 Silent p.V27V 0.13 TCGA-55-6982-01 10 96122664 96122664 G A NOC3L 5'UTR 0.11 TCGA-55-6982-01 11 100863119 100863119 G T TMEM133 Missense_Mutation p.C27F 0.22 tolerated_low_confidence(0.24) possibly_damaging(0.506) TCGA-55-6982-01 11 116693391 116693391 G A APOA4 Missense_Mutation p.L54F 0.09 tolerated(0.08) possibly_damaging(0.549) TCGA-55-6982-01 11 11972026 11972026 G C USP47 Missense_Mutation p.D1126H 0.09 deleterious(0.05) possibly_damaging(0.805) TCGA-55-6982-01 11 120291464 120291464 C G ARHGEF12 Missense_Mutation p.L68V 0.10 deleterious(0) probably_damaging(0.999) TCGA-55-6982-01 11 124789818 124789818 G C HEPN1 Missense_Mutation p.D58H 0.08 tolerated_low_confidence(0.07) probably_damaging(0.979) TCGA-55-6982-01 11 126306811 126306811 G C KIRREL3 Missense_Mutation p.L483V 0.11 deleterious(0) benign(0.002) TCGA-55-6982-01 11 1275512 1275512 C G MUC5B Silent p.L5136L 0.07 TCGA-55-6982-01 11 18956268 18956268 G C MRGPRX1 Missense_Mutation p.L22V 0.04 tolerated(0.54) benign(0.001) TCGA-55-6982-01 11 31784960 31784960 G C ELP4 Intron 0.10 TCGA-55-6982-01 11 40136376 40136376 C T LRRC4C Silent p.V489V 0.22 TCGA-55-6982-01 11 45928111 45928111 G T C11orf94 3'UTR 0.30 TCGA-55-6982-01 11 4621894 4621894 C T TRIM68 Missense_Mutation p.R357Q 0.15 deleterious(0.02) benign(0.173) TCGA-55-6982-01 11 46418995 46418995 T G AMBRA1 3'UTR 0.11 TCGA-55-6982-01 11 46819519 46819519 T C CKAP5 Missense_Mutation p.T392A 0.15 deleterious(0.01) probably_damaging(0.988) TCGA-55-6982-01 11 4869844 4869844 C T OR51S1 Missense_Mutation p.E199K 0.09 deleterious(0) benign(0.018) TCGA-55-6982-01 11 49207299 49207299 C A FOLH1 Nonsense_Mutation p.G250* 0.15 TCGA-55-6982-01 11 5411219 5411219 A G OR51M1 Missense_Mutation p.I197M 0.07 tolerated(0.87) probably_damaging(0.999) TCGA-55-6982-01 11 55322305 55322305 C A OR4C15 Missense_Mutation p.R175S 0.18 deleterious_low_confidence(0) benign(0.116) TCGA-55-6982-01 11 59224838 59224838 G A OR4D6 Missense_Mutation p.M135I 0.09 tolerated(1) benign(0) TCGA-55-6982-01 11 59271749 59271749 G T OR4D11 Missense_Mutation p.R234M 0.12 deleterious(0.02) probably_damaging(0.964) TCGA-55-6982-01 11 6007326 6007326 T A OR52L1 Missense_Mutation p.T279S 0.14 deleterious(0.02) benign(0.345) TCGA-55-6982-01 11 62289822 62289822 G C AHNAK Missense_Mutation p.L4023V 0.12 benign(0.327) TCGA-55-6982-01 11 62445299 62445299 C G UBXN1 Missense_Mutation p.R163T 0.11 deleterious(0) probably_damaging(0.998) TCGA-55-6982-01 11 62445457 62445457 C T UBXN1 Missense_Mutation p.E142K 0.17 deleterious(0) possibly_damaging(0.898) TCGA-55-6982-01 11 62556550 62556550 C T TMEM179B Missense_Mutation p.S51F 0.10 tolerated(0.21) benign(0.005) TCGA-55-6982-01 11 63971032 63971032 G C STIP1 Missense_Mutation p.M499I 0.10 deleterious(0.04) benign(0.008) TCGA-55-6982-01 11 64851485 64851485 C A CDCA5 5'UTR 0.23 TCGA-55-6982-01 11 66407528 66407528 G C RBM4 Missense_Mutation p.V116L 0.10 deleterious(0) possibly_damaging(0.83) TCGA-55-6982-01 11 71717294 71717294 C G NUMA1 Missense_Mutation p.E1827Q 0.10 benign(0.343) TCGA-55-6982-01 11 88780521 88780521 C T GRM5 Missense_Mutation p.A174T 0.10 tolerated(0.07) probably_damaging(0.999) TCGA-55-6982-01 12 112323825 112323825 G T MAPKAPK5 Missense_Mutation p.Q318H 0.10 tolerated(0.38) benign(0.004) TCGA-55-6982-01 12 116972422 116972422 C G LINC00173 RNA 0.08 TCGA-55-6982-01 12 121890993 121890993 C T KDM2B Missense_Mutation p.C630Y 0.09 deleterious(0) probably_damaging(1) TCGA-55-6982-01 12 1221420 1221420 C G ERC1 Missense_Mutation p.Q453E 0.09 tolerated(1) benign(0.004) TCGA-55-6982-01 12 122729162 122729162 C - VPS33A Frame_Shift_Del p.G308Afs*53 0.13 TCGA-55-6982-01 12 122729173 122729173 G T VPS33A Missense_Mutation p.F304L 0.20 deleterious(0.01) probably_damaging(0.986) TCGA-55-6982-01 12 13240941 13240941 G A GSG1 Silent p.F155F 0.12 TCGA-55-6982-01 12 25272230 25272230 G C CASC1 Silent p.L415L 0.06 TCGA-55-6982-01 12 2706430 2706430 T G CACNA1C Missense_Mutation p.I943S 0.09 deleterious_low_confidence(0) possibly_damaging(0.527) TCGA-55-6982-01 12 53709147 53709147 A G AAAS Missense_Mutation p.L124P 0.16 deleterious(0) probably_damaging(0.971) TCGA-55-6982-01 12 55688558 55688558 G A OR6C6 Silent p.I153I 0.11 TCGA-55-6982-01 12 57032983 57032983 G C ATP5B Missense_Mutation p.Q466E 0.08 deleterious_low_confidence(0) possibly_damaging(0.68) TCGA-55-6982-01 12 57036523 57036523 G A ATP5B Silent p.D295D 0.10 TCGA-55-6982-01 12 70065208 70065208 C T BEST3 Missense_Mutation p.G367E 0.06 tolerated(0.06) benign(0.006) TCGA-55-6982-01 12 71139815 71139815 C G PTPRR Missense_Mutation p.E264Q 0.04 tolerated(0.18) benign(0.258) TCGA-55-6982-01 12 73046174 73046174 C G TRHDE Missense_Mutation p.F871L 0.07 deleterious(0) probably_damaging(0.966) TCGA-55-6982-01 12 78444604 78444604 C T NAV3 Silent p.P731P 0.07 TCGA-55-6982-01 13 28885795 28885795 G A FLT1 Silent p.F1189F 0.18 TCGA-55-6982-01 13 33700248 33700248 C A STARD13 Silent p.L684L 0.13 TCGA-55-6982-01 13 38237715 38237715 A G TRPC4 Missense_Mutation p.L509P 0.29 deleterious(0) probably_damaging(1) TCGA-55-6982-01 13 76395416 76395416 G C LMO7 Missense_Mutation p.E538Q 0.10 deleterious(0.02) benign(0.272) TCGA-55-6982-01 14 107282959 107282959 G C IGHV7-81 Missense_Mutation p.Q62E 0.14 tolerated(0.06) benign(0.007) TCGA-55-6982-01 14 37135664 37135664 C T PAX9 Intron 0.31 TCGA-55-6982-01 14 70713926 70713926 G C ADAM21P1 RNA 0.09 TCGA-55-6982-01 14 71199253 71199253 C T MAP3K9 Intron 0.09 TCGA-55-6982-01 15 41810036 41810036 C T RPAP1 Missense_Mutation p.R1331H 0.12 deleterious(0.01) possibly_damaging(0.661) TCGA-55-6982-01 15 49301449 49301449 G T SECISBP2L Nonsense_Mutation p.S664* 0.10 TCGA-55-6982-01 15 72668262 72668262 C G HEXA Missense_Mutation p.G18R 0.10 tolerated(0.25) unknown(0) TCGA-55-6982-01 15 76165798 76165798 G A UBE2Q2 Missense_Mutation p.M159I 0.12 deleterious(0.01) possibly_damaging(0.838) TCGA-55-6982-01 16 10274229 10274229 C - GRIN2A Frame_Shift_Del p.A14Pfs*21 0.14 TCGA-55-6982-01 16 19663357 19663357 C A C16orf62 Silent p.L811L 0.19 TCGA-55-6982-01 16 2013102 2013102 G C RPS2 Intron 0.23 TCGA-55-6982-01 16 20975656 20975656 C T DNAH3 Missense_Mutation p.E3184K 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-55-6982-01 16 22358615 22358615 G C CDR2 Missense_Mutation p.L346V 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-6982-01 16 22358863 22358863 G C CDR2 Nonsense_Mutation p.S263* 0.06 TCGA-55-6982-01 16 24573246 24573246 G A RBBP6 Silent p.Q351Q 0.06 TCGA-55-6982-01 16 2514689 2514689 C T C16orf59 3'UTR 0.13 TCGA-55-6982-01 16 26147138 26147138 C A HS3ST4 Missense_Mutation p.L314M 0.11 tolerated(0.07) probably_damaging(0.999) TCGA-55-6982-01 16 30582364 30582364 C T ZNF688 Missense_Mutation p.E93K 0.12 deleterious(0.02) benign(0.417) TCGA-55-6982-01 16 30582410 30582410 C T ZNF688 Nonsense_Mutation p.W77* 0.17 TCGA-55-6982-01 16 31484844 31484844 C T TGFB1I1 Silent p.L32L 0.12 TCGA-55-6982-01 16 53504409 53504409 G C RBL2 Missense_Mutation p.G787A 0.09 tolerated(0.05) benign(0.008) TCGA-55-6982-01 16 56716476 56716476 G A MT1X Silent p.S8S 0.10 TCGA-55-6982-01 16 57286145 57286145 C T ARL2BP Missense_Mutation p.S153F 0.05 deleterious(0.01) benign(0.366) TCGA-55-6982-01 16 57689439 57689439 C T GPR56 Silent p.F299F 0.11 TCGA-55-6982-01 16 67338468 67338468 C G KCTD19 Missense_Mutation p.D103H 0.16 deleterious(0) possibly_damaging(0.679) TCGA-55-6982-01 16 72828079 72828079 G C ZFHX3 Missense_Mutation p.D2834E 0.20 unknown(0) TCGA-55-6982-01 16 82132100 82132100 G T HSD17B2 3'UTR 0.21 TCGA-55-6982-01 17 28886612 28886612 G T TBC1D29 5'UTR 0.15 TCGA-55-6982-01 17 36894636 36894636 G A PCGF2 Silent p.R182R 0.17 TCGA-55-6982-01 17 40125654 40125654 G A CNP Silent p.G326G 0.10 TCGA-55-6982-01 17 41150655 41150655 G A RPL27 5'UTR 0.20 TCGA-55-6982-01 17 46674022 46674022 C A HOXB6 Missense_Mutation p.G143V 0.09 deleterious(0) possibly_damaging(0.54) TCGA-55-6982-01 17 54452001 54452002 - CAG ANKFN1 In_Frame_Ins p.S284dup 0.15 TCGA-55-6982-01 17 73221790 73221790 C T NUP85 Intron 0.11 TCGA-55-6982-01 17 74721760 74721760 C T JMJD6 Missense_Mutation p.E103K 0.10 deleterious(0) possibly_damaging(0.847) TCGA-55-6982-01 17 80085740 80085740 C G CCDC57 Missense_Mutation p.Q798H 0.09 deleterious(0.03) benign(0.387) TCGA-55-6982-01 18 2892402 2892402 G C EMILIN2 Missense_Mutation p.K759N 0.18 deleterious(0) possibly_damaging(0.884) TCGA-55-6982-01 18 31319901 31319901 G A ASXL3 Missense_Mutation p.E845K 0.14 benign(0.242) TCGA-55-6982-01 18 39620662 39620662 C T PIK3C3 Missense_Mutation p.S687L 0.12 deleterious(0) probably_damaging(0.994) TCGA-55-6982-01 18 63525118 63525118 C T CDH7 Silent p.I434I 0.20 TCGA-55-6982-01 19 10221479 10221479 G A PPAN Missense_Mutation p.D380N 0.17 tolerated(0.16) benign(0.004) TCGA-55-6982-01 19 10221527 10221527 G A PPAN Missense_Mutation p.E396K 0.18 tolerated(0.07) benign(0.222) TCGA-55-6982-01 19 10398614 10398614 G A ICAM4 Intron 0.09 TCGA-55-6982-01 19 14006310 14006310 G A C19orf57 Silent p.D27D 0.10 TCGA-55-6982-01 19 14992104 14992104 C G OR7A17 Missense_Mutation p.E22Q 0.14 deleterious_low_confidence(0.04) benign(0.022) TCGA-55-6982-01 19 2876147 2876147 G A ZNF556 Missense_Mutation p.E63K 0.06 tolerated(0.27) benign(0.007) TCGA-55-6982-01 19 36362525 36362525 C T APLP1 Silent p.S183S 0.17 TCGA-55-6982-01 19 4338667 4338667 C T STAP2 Silent p.K28K 0.12 TCGA-55-6982-01 19 4847846 4847846 G A PLIN3 Nonsense_Mutation p.Q231* 0.21 TCGA-55-6982-01 19 50397678 50397678 G A IL4I1 Silent p.F160F 0.12 TCGA-55-6982-01 19 53855272 53855272 C T ZNF845 Silent p.F448F 0.11 TCGA-55-6982-01 19 54080157 54080157 G C ZNF331 Missense_Mutation p.E115Q 0.08 tolerated(1) benign(0.076) TCGA-55-6982-01 19 57175063 57175063 G A ZNF835 Missense_Mutation p.R502C 0.11 tolerated(0.1) benign(0.2) TCGA-55-6982-01 19 57869349 57869349 G A ZNF304 3'UTR 0.27 TCGA-55-6982-01 19 7570435 7570435 G C C19orf45 Missense_Mutation p.E310Q 0.14 tolerated(0.21) benign(0.126) TCGA-55-6982-01 19 9226191 9226191 C T OR7G1 Silent p.V83V 0.10 TCGA-55-6982-01 19 9491793 9491793 G A ZNF177 Silent p.E262E 0.12 TCGA-55-6982-01 1 100358154 100358154 C G AGL Missense_Mutation p.L1084V 0.14 deleterious(0.01) benign(0.108) TCGA-55-6982-01 1 108319902 108319902 C G VAV3 Missense_Mutation p.E133Q 0.13 tolerated(0.07) possibly_damaging(0.641) TCGA-55-6982-01 1 11576212 11576212 C G PTCHD2 Missense_Mutation p.F581L 0.11 tolerated(0.14) probably_damaging(0.996) TCGA-55-6982-01 1 145368669 145368669 C T NBPF10 Silent p.V3549V 0.05 TCGA-55-6982-01 1 149859277 149859277 G A HIST2H2AB Silent p.L64L 0.07 TCGA-55-6982-01 1 150316917 150316917 G A PRPF3 Missense_Mutation p.E512K 0.07 deleterious(0.01) probably_damaging(0.98) TCGA-55-6982-01 1 152081957 152081957 C G TCHH Missense_Mutation p.E1246Q 0.07 unknown(0) TCGA-55-6982-01 1 156214968 156214969 - ATAGGCT PAQR6 Frame_Shift_Ins p.P86Sfs*54 0.10 TCGA-55-6982-01 1 158324255 158324255 C A CD1E Missense_Mutation p.S49R 0.09 deleterious(0) possibly_damaging(0.837) TCGA-55-6982-01 1 158988382 158988382 G A IFI16 Missense_Mutation p.D305N 0.14 tolerated(0.66) possibly_damaging(0.878) TCGA-55-6982-01 1 159558241 159558241 C T APCS Nonsense_Mutation p.R139* 0.09 TCGA-55-6982-01 1 169347731 169347731 A C BLZF1 Missense_Mutation p.Q211P 0.22 deleterious(0) probably_damaging(0.982) TCGA-55-6982-01 1 172011224 172011224 C G DNM3 Silent p.L356L 0.10 TCGA-55-6982-01 1 172579328 172579328 G C SUCO Missense_Mutation p.D1232H 0.19 deleterious(0) probably_damaging(0.971) TCGA-55-6982-01 1 177245507 177245507 G C BRINP2 Missense_Mutation p.E317Q 0.06 tolerated(0.07) benign(0.209) TCGA-55-6982-01 1 179820418 179820418 C T TOR1AIP2 Missense_Mutation p.E39K 0.09 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-55-6982-01 1 186086243 186086243 C G HMCN1 Silent p.V3893V 0.09 TCGA-55-6982-01 1 201980376 201980376 G C ELF3 Missense_Mutation p.D38H 0.08 deleterious(0.02) possibly_damaging(0.881) TCGA-55-6982-01 1 205553109 205553109 G A MFSD4 Missense_Mutation p.M239I 0.11 tolerated(0.22) benign(0.01) TCGA-55-6982-01 1 212799595 212799595 C T FAM71A Missense_Mutation p.S459F 0.10 deleterious(0.03) benign(0.34) TCGA-55-6982-01 1 22032648 22032648 G C USP48 Missense_Mutation p.F748L 0.05 tolerated(0.64) benign(0.065) TCGA-55-6982-01 1 228248004 228248004 G A WNT3A 3'UTR 0.10 TCGA-55-6982-01 1 237777351 237777351 C T RYR2 Silent p.I1641I 0.09 TCGA-55-6982-01 1 248737462 248737462 G A OR2T34 Silent p.L199L 0.08 TCGA-55-6982-01 1 27159094 27159094 G A ZDHHC18 Silent p.Q164Q 0.11 TCGA-55-6982-01 1 27217193 27217193 G C GPATCH3 3'UTR 0.20 TCGA-55-6982-01 1 29618506 29618506 C T PTPRU Missense_Mutation p.S825F 0.09 tolerated(0.05) possibly_damaging(0.786) TCGA-55-6982-01 1 32497185 32497185 G C KHDRBS1 Missense_Mutation p.E190Q 0.07 deleterious(0.03) possibly_damaging(0.885) TCGA-55-6982-01 1 37974889 37974889 G T MEAF6 Silent p.L110L 0.13 TCGA-55-6982-01 1 39889739 39889739 G A MACF1 Missense_Mutation p.D3335N 0.07 possibly_damaging(0.549) TCGA-55-6982-01 1 46532698 46532698 G A PIK3R3 Missense_Mutation p.P127L 0.10 deleterious(0) probably_damaging(0.999) TCGA-55-6982-01 1 47838678 47838678 G C CMPK1 Missense_Mutation p.D124H 0.06 deleterious(0) probably_damaging(0.999) TCGA-55-6982-01 1 70555443 70555443 G C LRRC7 Missense_Mutation p.G1458R 0.12 deleterious(0) probably_damaging(0.99) TCGA-55-6982-01 1 74834796 74834796 C G FPGT-TNNI3K Nonsense_Mutation p.S585* 0.12 TCGA-55-6982-01 20 17581458 17581458 G C DSTN Missense_Mutation p.E27Q 0.13 deleterious(0.01) possibly_damaging(0.66) TCGA-55-6982-01 20 25459684 25459684 G A NINL Silent p.G692G 0.09 TCGA-55-6982-01 20 2779492 2779492 C - CPXM1 Frame_Shift_Del p.V74Sfs*3 0.16 TCGA-55-6982-01 20 35752146 35752146 G A MROH8 Silent p.F641F 0.12 TCGA-55-6982-01 20 44869617 44869617 C T CDH22 Missense_Mutation p.E179K 0.10 deleterious(0) probably_damaging(1) TCGA-55-6982-01 20 49620516 49620516 C T KCNG1 3'UTR 0.34 TCGA-55-6982-01 20 8639341 8639341 C T PLCB1 Silent p.L284L 0.10 TCGA-55-6982-01 21 19670055 19670055 G A TMPRSS15 Missense_Mutation p.P753S 0.10 tolerated(0.12) possibly_damaging(0.597) TCGA-55-6982-01 21 31538736 31538736 T C CLDN17 Missense_Mutation p.Y67C 0.18 deleterious(0) probably_damaging(1) TCGA-55-6982-01 21 38095368 38095368 C G SIM2 Missense_Mutation p.F160L 0.09 deleterious(0.03) possibly_damaging(0.852) TCGA-55-6982-01 22 31328534 31328534 G C MORC2 Silent p.L853L 0.17 TCGA-55-6982-01 22 39069240 39069240 G A CBY1 Silent p.%3D 0.17 TCGA-55-6982-01 22 42321382 42321382 C T TNFRSF13C Missense_Mutation p.E182K 0.15 deleterious(0) possibly_damaging(0.75) TCGA-55-6982-01 2 109415023 109415023 G A CCDC138 Missense_Mutation p.R239K 0.09 tolerated(0.71) benign(0.14) TCGA-55-6982-01 2 116538488 116538488 C T DPP10 Missense_Mutation p.S471L 0.09 deleterious(0) possibly_damaging(0.891) TCGA-55-6982-01 2 135625270 135625270 G C ACMSD Intron 0.05 TCGA-55-6982-01 2 160798460 160798460 C T PLA2R1 Silent p.L1407L 0.13 TCGA-55-6982-01 2 166011088 166011088 C T SCN3A Silent p.L418L 0.11 TCGA-55-6982-01 2 170145598 170145598 C G LRP2 Missense_Mutation p.G327A 0.10 probably_damaging(0.999) TCGA-55-6982-01 2 171070933 171070933 C G MYO3B Silent p.L122L 0.08 TCGA-55-6982-01 2 171818224 171818224 C G GORASP2 Missense_Mutation p.S292C 0.08 deleterious(0.01) benign(0.072) TCGA-55-6982-01 2 178095793 178095793 T A NFE2L2 Missense_Mutation p.N513I 0.07 deleterious(0) probably_damaging(1) TCGA-55-6982-01 2 179429007 179429007 G A TTN Silent p.V27284V 0.10 TCGA-55-6982-01 2 179462356 179462356 C G TTN Missense_Mutation p.K19151N 0.09 TCGA-55-6982-01 2 179477958 179477958 C G TTN Missense_Mutation p.L16526F 0.14 TCGA-55-6982-01 2 185802056 185802056 G T ZNF804A Missense_Mutation p.A645S 0.10 tolerated(0.24) benign(0.063) TCGA-55-6982-01 2 196737073 196737073 G A DNAH7 Silent p.F2178F 0.08 TCGA-55-6982-01 2 197189815 197189815 C G HECW2 Missense_Mutation p.K210N 0.12 deleterious(0) probably_damaging(0.998) TCGA-55-6982-01 2 207172245 207172245 C G ZDBF2 Nonsense_Mutation p.S998* 0.10 TCGA-55-6982-01 2 20939904 20939904 C T C2orf43 Missense_Mutation p.R177K 0.13 tolerated(0.92) benign(0.014) TCGA-55-6982-01 2 219129318 219129318 C A AAMP Missense_Mutation p.V415L 0.17 tolerated(0.47) benign(0.096) TCGA-55-6982-01 2 220116284 220116284 C G TUBA4A Intron 0.08 TCGA-55-6982-01 2 238262013 238262013 C G COL6A3 Missense_Mutation p.E2221Q 0.10 benign(0.001) TCGA-55-6982-01 2 238283578 238283578 C G COL6A3 Missense_Mutation p.Q1052H 0.06 probably_damaging(0.986) TCGA-55-6982-01 2 239054455 239054455 G C KLHL30 Missense_Mutation p.E378Q 0.11 tolerated(0.23) probably_damaging(0.966) TCGA-55-6982-01 2 242265435 242265435 G A SEPT2 Missense_Mutation p.E13K 0.10 tolerated(0.14) possibly_damaging(0.69) TCGA-55-6982-01 2 242572898 242572898 C T THAP4 Missense_Mutation p.G225E 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-6982-01 2 27351351 27351351 G A ABHD1 Missense_Mutation p.E53K 0.10 tolerated(0.41) benign(0.002) TCGA-55-6982-01 2 32475393 32475393 G C NLRC4 Missense_Mutation p.Q514E 0.17 tolerated(0.33) benign(0.001) TCGA-55-6982-01 2 74651999 74651999 C T WDR54 Intron 0.12 TCGA-55-6982-01 3 10346800 10346800 C G SEC13 Missense_Mutation p.E209Q 0.16 tolerated(0.45) benign(0.023) TCGA-55-6982-01 3 112709823 112709823 C G GTPBP8 5'UTR 0.12 TCGA-55-6982-01 3 122269548 122269548 C G PARP9 Missense_Mutation p.K438N 0.11 tolerated(0.5) benign(0.021) TCGA-55-6982-01 3 14223145 14223145 A T LSM3 Missense_Mutation p.D36V 0.13 deleterious(0) possibly_damaging(0.905) TCGA-55-6982-01 3 184039405 184039405 C T EIF4G1 Missense_Mutation p.L352F 0.11 tolerated(0.07) possibly_damaging(0.621) TCGA-55-6982-01 3 184040362 184040362 C T EIF4G1 Nonsense_Mutation p.Q554* 0.11 TCGA-55-6982-01 3 184072029 184072029 C G CLCN2 Missense_Mutation p.Q527H 0.18 deleterious(0.02) possibly_damaging(0.651) TCGA-55-6982-01 3 192516720 192516720 G A MB21D2 Nonsense_Mutation p.Q311* 0.13 TCGA-55-6982-01 3 33194491 33194491 C T SUSD5 Missense_Mutation p.E545K 0.20 deleterious(0.01) probably_damaging(0.981) TCGA-55-6982-01 3 38348012 38348012 G C SLC22A14 Missense_Mutation p.K165N 0.15 deleterious(0.04) benign(0.086) TCGA-55-6982-01 3 44611964 44611964 C G ZKSCAN7 Silent p.L454L 0.18 TCGA-55-6982-01 3 46008734 46008734 T C FYCO1 Missense_Mutation p.K698E 0.11 deleterious(0) possibly_damaging(0.853) TCGA-55-6982-01 3 46063107 46063107 G A XCR1 Silent p.I111I 0.29 TCGA-55-6982-01 3 8809434 8809434 G A OXTR Missense_Mutation p.S147L 0.13 deleterious(0.01) benign(0.152) TCGA-55-6982-01 3 89499479 89499479 G C EPHA3 Silent p.R883R 0.14 TCGA-55-6982-01 3 9870813 9870813 G A TTLL3 Missense_Mutation p.D573N 0.15 tolerated(0.15) benign(0.002) TCGA-55-6982-01 4 10446410 10446410 C G ZNF518B Missense_Mutation p.E515Q 0.15 tolerated(0.11) benign(0.348) TCGA-55-6982-01 4 109084728 109084728 C T LEF1 Missense_Mutation p.R137K 0.08 tolerated(0.42) possibly_damaging(0.588) TCGA-55-6982-01 4 114899776 114899776 G A ARSJ Missense_Mutation p.S72F 0.17 tolerated(0.07) benign(0.002) TCGA-55-6982-01 4 128802317 128802317 G C PLK4 Missense_Mutation p.E10Q 0.08 tolerated(0.18) benign(0.062) TCGA-55-6982-01 4 151504343 151504343 C T MAB21L2 Silent p.S54S 0.18 TCGA-55-6982-01 4 151773315 151773315 T C LRBA Missense_Mutation p.T1183A 0.13 tolerated_low_confidence(0.28) benign(0.001) TCGA-55-6982-01 4 169923215 169923215 C T CBR4 Intron 0.21 TCGA-55-6982-01 4 1962800 1962800 C T WHSC1 Silent p.D1098D 0.15 TCGA-55-6982-01 4 38016340 38016340 G A TBC1D1 Missense_Mutation p.E210K 0.14 tolerated(0.15) benign(0.033) TCGA-55-6982-01 4 38776315 38776315 C T TLR10 Missense_Mutation p.M299I 0.09 tolerated(0.13) benign(0.139) TCGA-55-6982-01 4 41747895 41747895 C T PHOX2B Missense_Mutation p.A292T 0.11 deleterious_low_confidence(0) unknown(0) TCGA-55-6982-01 4 47538713 47538713 C G ATP10D Missense_Mutation p.P385R 0.08 deleterious(0) probably_damaging(0.997) TCGA-55-6982-01 4 5966748 5966748 C T C4orf50 Intron 0.16 TCGA-55-6982-01 4 73957704 73957704 G A ANKRD17 Missense_Mutation p.L1881F 0.12 possibly_damaging(0.53) TCGA-55-6982-01 4 78663394 78663394 C A CNOT6L Missense_Mutation p.G258V 0.15 deleterious(0) probably_damaging(1) TCGA-55-6982-01 4 79503336 79503336 G T ANXA3 Silent p.L68L 0.14 TCGA-55-6982-01 4 82031655 82031655 G C PRKG2 Missense_Mutation p.F629L 0.20 tolerated(0.55) benign(0.133) TCGA-55-6982-01 4 83827511 83827511 G C THAP9 Missense_Mutation p.R104T 0.05 deleterious(0.04) benign(0.014) TCGA-55-6982-01 4 85722828 85722828 G C WDFY3 Missense_Mutation p.Q933E 0.10 deleterious(0) possibly_damaging(0.682) TCGA-55-6982-01 4 94006245 94006245 C T GRID2 Missense_Mutation p.P115L 0.15 deleterious(0) probably_damaging(1) TCGA-55-6982-01 5 10442228 10442228 C G ROPN1L Intron 0.10 TCGA-55-6982-01 5 1089171 1089171 G A SLC12A7 Silent p.L139L 0.07 TCGA-55-6982-01 5 126792896 126792896 G A MEGF10 Silent p.K1103K 0.09 TCGA-55-6982-01 5 137754766 137754766 G A KDM3B Missense_Mutation p.R1187K 0.11 tolerated(0.94) benign(0.001) TCGA-55-6982-01 5 139936884 139936884 G A SRA1 Intron 0.07 TCGA-55-6982-01 5 140755330 140755330 C T PCDHGA6 Silent p.P560P 0.14 TCGA-55-6982-01 5 147830796 147830796 C G HTR4 Missense_Mutation p.E372D 0.10 tolerated_low_confidence(0.64) benign(0.001) TCGA-55-6982-01 5 15937263 15937263 G A FBXL7 Missense_Mutation p.V482I 0.19 tolerated(1) benign(0.001) TCGA-55-6982-01 5 169683535 169683535 G C LCP2 Missense_Mutation p.S382C 0.06 deleterious(0.01) possibly_damaging(0.855) TCGA-55-6982-01 5 176520438 176520438 C T FGFR4 Missense_Mutation p.S428L 0.10 tolerated(0.12) benign(0.022) TCGA-55-6982-01 5 180582116 180582116 C T OR2V2 Silent p.T58T 0.19 TCGA-55-6982-01 5 5182332 5182332 G T ADAMTS16 Missense_Mutation p.W226L 0.04 tolerated(0.65) benign(0) TCGA-55-6982-01 5 57790482 57790482 G A GAPT Missense_Mutation p.R40Q 0.14 tolerated(0.53) benign(0.081) TCGA-55-6982-01 5 76932692 76932692 C G OTP Missense_Mutation p.R134P 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-55-6982-01 5 76932712 76932712 G C OTP Missense_Mutation p.H127Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-55-6982-01 5 7878244 7878244 G C MTRR Missense_Mutation p.D224H 0.11 tolerated(0.07) possibly_damaging(0.773) TCGA-55-6982-01 5 80626663 80626663 G A ACOT12 Silent p.L496L 0.08 TCGA-55-6982-01 5 9043069 9043069 G C SEMA5A Silent p.L1055L 0.13 TCGA-55-6982-01 5 94857809 94857809 G C TTC37 Missense_Mutation p.Q654E 0.08 tolerated(1) benign(0.003) TCGA-55-6982-01 6 123118004 123118004 C T SMPDL3A Missense_Mutation p.S121L 0.08 deleterious(0) probably_damaging(1) TCGA-55-6982-01 6 137322794 137322794 G A IL20RA Silent p.L521L 0.08 TCGA-55-6982-01 6 157528089 157528089 G T ARID1B Missense_Mutation p.Q1938H 0.11 probably_damaging(0.916) TCGA-55-6982-01 6 157528090 157528090 G T ARID1B Missense_Mutation p.D1939Y 0.10 probably_damaging(0.999) TCGA-55-6982-01 6 16327156 16327156 G A ATXN1 Silent p.I462I 0.11 TCGA-55-6982-01 6 167550322 167550322 C A CCR6 Missense_Mutation p.Q202K 0.10 tolerated(0.85) benign(0.001) TCGA-55-6982-01 6 167570790 167570790 C G GPR31 Missense_Mutation p.W177S 0.10 deleterious(0.01) possibly_damaging(0.696) TCGA-55-6982-01 6 28269471 28269471 C G PGBD1 Missense_Mutation p.L614V 0.12 deleterious(0.04) probably_damaging(0.998) TCGA-55-6982-01 6 31774562 31774562 G A LSM2 5'UTR 0.11 TCGA-55-6982-01 6 32632765 32632765 G C HLA-DQB1 Missense_Mutation p.I63M 0.21 deleterious(0.01) possibly_damaging(0.804) TCGA-55-6982-01 6 33654857 33654857 C G ITPR3 Silent p.L2017L 0.17 TCGA-55-6982-01 6 43109431 43109431 G A PTK7 Silent p.V556V 0.06 TCGA-55-6982-01 6 4892238 4892238 G T CDYL Nonsense_Mutation p.E106* 0.14 TCGA-55-6982-01 7 108155227 108155227 C T PNPLA8 Missense_Mutation p.E237K 0.13 tolerated(0.26) benign(0.002) TCGA-55-6982-01 7 116412042 116412047 AGGTAT - MET Splice_Site p.X1028_splice 0.15 TCGA-55-6982-01 7 129843654 129843654 A C TMEM209 Missense_Mutation p.V58G 0.19 deleterious(0) possibly_damaging(0.541) TCGA-55-6982-01 7 140221722 140221722 G A DENND2A Silent p.V948V 0.08 TCGA-55-6982-01 7 143047716 143047716 G T CLCN1 Missense_Mutation p.G855V 0.10 deleterious(0) probably_damaging(0.997) TCGA-55-6982-01 7 143771395 143771395 G A OR2A25 Missense_Mutation p.G28E 0.11 tolerated(0.18) possibly_damaging(0.695) TCGA-55-6982-01 7 144070344 144070344 C T ARHGEF5 Silent p.I1369I 0.06 TCGA-55-6982-01 7 17367416 17367416 G A AHR Missense_Mutation p.D132N 0.08 deleterious(0.04) possibly_damaging(0.817) TCGA-55-6982-01 7 2953041 2953041 G A CARD11 Missense_Mutation p.R967C 0.08 deleterious(0.01) possibly_damaging(0.453) TCGA-55-6982-01 7 31142970 31142970 G T ADCYAP1R1 Missense_Mutation p.G417V 0.14 deleterious(0) probably_damaging(0.999) TCGA-55-6982-01 7 41729440 41729440 C - INHBA Frame_Shift_Del p.S364Pfs*33 0.10 TCGA-55-6982-01 7 6043687 6043687 G C PMS2 Missense_Mutation p.L56V 0.15 tolerated(0.81) benign(0.057) TCGA-55-6982-01 7 64168600 64168600 G A ZNF107 Missense_Mutation p.E640K 0.09 deleterious(0.03) possibly_damaging(0.879) TCGA-55-6982-01 7 72744349 72744349 C T FKBP6 Silent p.L154L 0.12 TCGA-55-6982-01 7 75228554 75228554 G C HIP1 Missense_Mutation p.I44M 0.10 deleterious(0.01) probably_damaging(0.961) TCGA-55-6982-01 7 81335005 81335005 C T HGF Missense_Mutation p.E608K 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-55-6982-01 7 99217442 99217442 G A ZSCAN25 Silent p.L71L 0.15 TCGA-55-6982-01 8 10583724 10583724 G A SOX7 Missense_Mutation p.P283S 0.16 tolerated(0.74) benign(0.007) TCGA-55-6982-01 8 109001387 109001387 G C RSPO2 Missense_Mutation p.F60L 0.10 deleterious(0) benign(0.332) TCGA-55-6982-01 8 110131366 110131366 C T TRHR Silent p.S293S 0.09 TCGA-55-6982-01 8 132052045 132052045 G A ADCY8 Missense_Mutation p.R179C 0.18 deleterious(0) probably_damaging(0.929) TCGA-55-6982-01 8 17739550 17739550 C T FGL1 Missense_Mutation p.E68K 0.14 tolerated(0.19) benign(0.132) TCGA-55-6982-01 8 1905296 1905296 C A ARHGEF10 Missense_Mutation p.A1301D 0.11 tolerated(0.62) possibly_damaging(0.481) TCGA-55-6982-01 8 2965255 2965255 C T CSMD1 Missense_Mutation p.D2274N 0.10 benign(0.004) TCGA-55-6982-01 8 2965273 2965273 C G CSMD1 Missense_Mutation p.E2268Q 0.12 possibly_damaging(0.61) TCGA-55-6982-01 9 100245169 100245169 T C TDRD7 Silent p.V817V 0.17 TCGA-55-6982-01 9 125642152 125642152 T G RC3H2 Missense_Mutation p.D365A 0.09 deleterious(0) possibly_damaging(0.9) TCGA-55-6982-01 9 125681747 125681747 C G ZBTB26 Missense_Mutation p.R156T 0.08 tolerated(0.56) benign(0.001) TCGA-55-6982-01 9 35706061 35706061 C T TLN1 Missense_Mutation p.M1803I 0.13 tolerated(0.07) possibly_damaging(0.885) TCGA-55-6982-01 9 79118113 79118113 C G GCNT1 Silent p.V272V 0.10 TCGA-55-6982-01 9 84608772 84608772 G C SPATA31D1 Missense_Mutation p.K1129N 0.09 tolerated(0.24) benign(0.076) TCGA-55-6982-01 9 86587088 86587088 C T HNRNPK Missense_Mutation p.R221H 0.12 tolerated(0.38) benign(0.001) TCGA-55-6982-01 9 95222019 95222019 G A ASPN Silent p.I280I 0.17 TCGA-55-6982-01 X 100871496 100871496 C G ARMCX6 Missense_Mutation p.E39Q 0.14 deleterious(0.02) possibly_damaging(0.722) TCGA-55-6982-01 X 12904782 12904782 G C TLR7 Missense_Mutation p.L385F 0.07 deleterious(0.01) probably_damaging(1) TCGA-55-6982-01 X 135405147 135405147 G A GPR112 Missense_Mutation p.G94E 0.13 deleterious(0.02) probably_damaging(0.992) TCGA-55-6982-01 X 150572114 150572114 C T VMA21 Missense_Mutation p.S22L 0.11 deleterious(0) benign(0.02) TCGA-55-6982-01 X 54955044 54955044 G A TRO Silent p.K629K 0.08 TCGA-55-6982-01 X 68060218 68060218 C T EFNB1 Silent p.I254I 0.16 TCGA-55-6983-01 10 25861630 25861630 G T GPR158 Missense_Mutation p.G523C 0.15 deleterious(0.05) probably_damaging(0.957) TCGA-55-6983-01 10 38121171 38121171 C A ZNF248 Missense_Mutation p.R371L 0.13 deleterious(0.03) possibly_damaging(0.683) TCGA-55-6983-01 10 73569756 73569756 G A CDH23 Missense_Mutation p.V728M 0.17 deleterious(0.01) probably_damaging(0.935) TCGA-55-6983-01 10 95216684 95216684 C A MYOF Missense_Mutation p.K33N 0.09 deleterious(0) probably_damaging(1) TCGA-55-6983-01 11 1264070 1264070 C T MUC5B Missense_Mutation p.S1987F 0.18 unknown(0) TCGA-55-6983-01 11 134251867 134251867 T A B3GAT1 Nonsense_Mutation p.K324* 0.07 TCGA-55-6983-01 11 17542494 17542494 C T USH1C Nonsense_Mutation p.W378* 0.18 TCGA-55-6983-01 11 32413568 32413568 G T WT1 Missense_Mutation p.S461Y 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-6983-01 11 4790208 4790208 T C MMP26 Intron 0.13 TCGA-55-6983-01 11 4824767 4824767 G C OR52R1 Missense_Mutation p.L282V 0.19 tolerated(0.58) benign(0.042) TCGA-55-6983-01 11 55735552 55735552 T G OR10AG1 Missense_Mutation p.K130Q 0.20 deleterious(0.03) benign(0.301) TCGA-55-6983-01 11 59245081 59245081 A G OR4D10 Missense_Mutation p.Y60C 0.07 deleterious(0) probably_damaging(1) TCGA-55-6983-01 12 109936113 109936113 G A UBE3B Missense_Mutation p.D299N 0.15 tolerated(0.54) benign(0.008) TCGA-55-6983-01 12 112471045 112471045 G A NAA25 Missense_Mutation p.L930F 0.19 tolerated(0.68) benign(0.001) TCGA-55-6983-01 12 113553497 113553497 G A RASAL1 Missense_Mutation p.R316W 0.12 deleterious(0.01) possibly_damaging(0.828) TCGA-55-6983-01 12 13715664 13715664 G A GRIN2B 3'UTR 0.09 TCGA-55-6983-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.33 deleterious(0.04) probably_damaging(0.993) TCGA-55-6983-01 12 52629142 52629142 C A KRT7 Missense_Mutation p.F176L 0.20 deleterious(0.01) benign(0.058) TCGA-55-6983-01 12 57619307 57619307 T A NXPH4 Missense_Mutation p.V235E 0.13 deleterious(0) probably_damaging(0.993) TCGA-55-6983-01 12 6619879 6619879 C T NCAPD2 Missense_Mutation p.A116V 0.04 tolerated(0.05) benign(0.169) TCGA-55-6983-01 12 7649703 7649703 C T CD163 Missense_Mutation p.V269I 0.09 tolerated(0.09) benign(0.026) TCGA-55-6983-01 13 28589835 28589835 G - FLT3 Frame_Shift_Del p.R849Vfs*4 0.16 TCGA-55-6983-01 13 95273342 95273342 C T GPR180 Silent p.I249I 0.05 TCGA-55-6983-01 14 20248875 20248875 T A OR4M1 Missense_Mutation p.Y132N 0.05 deleterious(0) probably_damaging(0.996) TCGA-55-6983-01 14 56755184 56755184 C G PELI2 Missense_Mutation p.D113E 0.25 deleterious(0) probably_damaging(0.968) TCGA-55-6983-01 15 24922305 24922305 G T NPAP1 Missense_Mutation p.D431Y 0.10 deleterious(0.03) possibly_damaging(0.866) TCGA-55-6983-01 15 40268969 40268969 G - EIF2AK4 Frame_Shift_Del p.A725Pfs*66 0.10 TCGA-55-6983-01 15 75981484 75981484 C A CSPG4 Missense_Mutation p.R641L 0.11 deleterious(0.01) benign(0.407) TCGA-55-6983-01 15 84651344 84651344 G C ADAMTSL3 Missense_Mutation p.Q988H 0.31 tolerated(0.42) benign(0.004) TCGA-55-6983-01 15 84706565 84706565 G T ADAMTSL3 3'UTR 0.42 TCGA-55-6983-01 16 18866017 18866017 C T SMG1 Missense_Mutation p.E1482K 0.12 tolerated(0.46) probably_damaging(0.972) TCGA-55-6983-01 16 24803129 24803129 A T TNRC6A Missense_Mutation p.S1056C 0.25 tolerated(0.2) benign(0.005) TCGA-55-6983-01 16 57775655 57775655 G T KATNB1 Missense_Mutation p.G33W 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-6983-01 17 10411741 10411741 G T MYH1 Nonsense_Mutation p.Y612* 0.21 TCGA-55-6983-01 17 32961947 32961947 C T TMEM132E Silent p.S516S 0.09 TCGA-55-6983-01 17 39137108 39137108 G T KRT40 Missense_Mutation p.Q302K 0.11 tolerated(0.12) probably_damaging(0.995) TCGA-55-6983-01 17 40101407 40101407 A C TTC25 RNA 0.18 TCGA-55-6983-01 17 40120102 40120102 G A CNP Missense_Mutation p.R7Q 0.06 deleterious_low_confidence(0.04) benign(0.019) TCGA-55-6983-01 17 5124612 5124612 T - SCIMP Frame_Shift_Del p.H60Pfs*4 0.09 TCGA-55-6983-01 17 62238285 62238285 T A TEX2 Missense_Mutation p.I901F 0.14 tolerated(0.82) benign(0.006) TCGA-55-6983-01 17 7365687 7365687 C A ZBTB4 Missense_Mutation p.V872L 0.16 possibly_damaging(0.611) TCGA-55-6983-01 17 7851025 7851025 G T CNTROB Missense_Mutation p.K710N 0.10 tolerated_low_confidence(0.1) probably_damaging(0.999) TCGA-55-6983-01 17 80059641 80059641 T C FASN 5'Flank 0.12 TCGA-55-6983-01 18 14542792 14542792 G T POTEC Silent p.G118G 0.06 TCGA-55-6983-01 18 25616479 25616479 T A CDH2 Intron 0.18 TCGA-55-6983-01 18 55020028 55020028 C T ST8SIA3 5'UTR 0.11 TCGA-55-6983-01 18 63430252 63430252 G T CDH7 Missense_Mutation p.E58D 0.19 deleterious(0) possibly_damaging(0.867) TCGA-55-6983-01 18 641480 641480 G T CLUL1 Missense_Mutation p.G383V 0.11 deleterious(0) probably_damaging(0.994) TCGA-55-6983-01 18 7231146 7231146 A G LRRC30 Missense_Mutation p.R4G 0.08 tolerated(0.07) benign(0) TCGA-55-6983-01 18 77896341 77896341 G C ADNP2 Silent p.V1015V 0.22 TCGA-55-6983-01 19 18375896 18375896 C T KIAA1683 Silent p.Q818Q 0.07 TCGA-55-6983-01 19 37619025 37619025 C T ZNF420 Missense_Mutation p.L378F 0.08 deleterious(0.05) possibly_damaging(0.867) TCGA-55-6983-01 19 40411646 40411646 T A FCGBP Nonsense_Mutation p.K1328* 0.17 TCGA-55-6983-01 19 43258571 43258571 G T PSG8 Missense_Mutation p.T386K 0.18 tolerated(0.3) benign(0.283) TCGA-55-6983-01 19 47986421 47986421 G C KPTN Missense_Mutation p.A149G 0.15 deleterious(0.01) benign(0.171) TCGA-55-6983-01 19 5274329 5274329 T A PTPRS Nonsense_Mutation p.K40* 0.34 TCGA-55-6983-01 19 53268962 53268962 G C ZNF600 Missense_Mutation p.Q683E 0.16 tolerated(1) benign(0.001) TCGA-55-6983-01 19 53303701 53303701 G T ZNF28 Missense_Mutation p.P466Q 0.10 deleterious(0) probably_damaging(0.937) TCGA-55-6983-01 19 58565042 58565042 C T ZSCAN1 Missense_Mutation p.R284C 0.10 deleterious(0) possibly_damaging(0.586) TCGA-55-6983-01 19 8953771 8953771 C T MBD3L1 Silent p.I139I 0.16 TCGA-55-6983-01 1 11082410 11082410 C T TARDBP Missense_Mutation p.A315V 0.06 tolerated(0.18) benign(0.003) TCGA-55-6983-01 1 110882201 110882201 C T RBM15 Silent p.S58S 0.17 TCGA-55-6983-01 1 12884933 12884933 T C PRAMEF11 Missense_Mutation p.Q393R 0.08 tolerated(0.09) possibly_damaging(0.894) TCGA-55-6983-01 1 147230940 147230940 C T GJA5 Nonsense_Mutation p.W136* 0.05 TCGA-55-6983-01 1 150485219 150485219 G C ECM1 Silent p.L468L 0.08 TCGA-55-6983-01 1 154919123 154919123 C T PBXIP1 Missense_Mutation p.A343T 0.36 deleterious(0.03) possibly_damaging(0.625) TCGA-55-6983-01 1 154919124 154919124 C A PBXIP1 Missense_Mutation p.E342D 0.33 deleterious(0.01) possibly_damaging(0.716) TCGA-55-6983-01 1 156882331 156882331 A T PEAR1 Missense_Mutation p.Q709L 0.22 deleterious(0.03) benign(0.005) TCGA-55-6983-01 1 158609780 158609780 C A SPTA1 Silent p.L1585L 0.17 TCGA-55-6983-01 1 158609781 158609781 A G SPTA1 Missense_Mutation p.L1585P 0.16 deleterious(0) probably_damaging(1) TCGA-55-6983-01 1 238048857 238048857 C A ZP4 Missense_Mutation p.G332C 0.14 deleterious(0.02) probably_damaging(0.935) TCGA-55-6983-01 1 248436327 248436327 T C OR2T33 Missense_Mutation p.R264G 0.20 deleterious(0.02) probably_damaging(0.938) TCGA-55-6983-01 1 68603589 68603589 C A WLS Missense_Mutation p.G462C 0.17 deleterious(0.01) possibly_damaging(0.808) TCGA-55-6983-01 1 75038965 75038965 C A C1orf173 Missense_Mutation p.R810M 0.14 deleterious(0.01) possibly_damaging(0.717) TCGA-55-6983-01 1 89480335 89480335 T A GBP3 Missense_Mutation p.D108V 0.30 deleterious(0) probably_damaging(0.929) TCGA-55-6983-01 20 34078568 34078568 A G CEP250 Missense_Mutation p.M898V 0.07 benign(0.005) TCGA-55-6983-01 20 3728940 3728940 G A HSPA12B Missense_Mutation p.R251H 0.15 deleterious(0.02) possibly_damaging(0.876) TCGA-55-6983-01 20 52198292 52198292 C T ZNF217 Silent p.A358A 0.07 TCGA-55-6983-01 20 62730084 62730084 G A OPRL1 Missense_Mutation p.V349M 0.22 tolerated(0.41) benign(0.029) TCGA-55-6983-01 21 32410632 32410632 T G KRTAP19-8 Missense_Mutation p.Y44S 0.17 tolerated_low_confidence(0.35) unknown(0) TCGA-55-6983-01 22 19750849 19750849 G A TBX1 Missense_Mutation p.D166N 0.23 deleterious(0) possibly_damaging(0.907) TCGA-55-6983-01 22 26776282 26776282 G A SEZ6L 3'UTR 0.12 TCGA-55-6983-01 2 11053812 11053812 G T KCNF1 Missense_Mutation p.E420D 0.09 deleterious(0.02) benign(0.012) TCGA-55-6983-01 2 112754934 112754934 G T MERTK Silent p.A495A 0.21 TCGA-55-6983-01 2 135744057 135744057 G A MAP3K19 Silent p.S795S 0.08 TCGA-55-6983-01 2 137814267 137814267 G C THSD7B Missense_Mutation p.Q139H 0.14 deleterious(0) possibly_damaging(0.891) TCGA-55-6983-01 2 170493582 170493582 G T PPIG Missense_Mutation p.R605L 0.19 deleterious_low_confidence(0) unknown(0) TCGA-55-6983-01 2 179451522 179451522 G A TTN Missense_Mutation p.P21369L 0.09 TCGA-55-6983-01 2 206581060 206581060 G T NRP2 Missense_Mutation p.G132V 0.19 deleterious(0) probably_damaging(1) TCGA-55-6983-01 2 206581061 206581061 G T NRP2 Silent p.G132G 0.19 TCGA-55-6983-01 2 241078674 241078674 G T OTOS Silent p.P61P 0.08 TCGA-55-6983-01 2 49381520 49381520 T A FSHR Missense_Mutation p.S13C 0.32 tolerated(0.18) benign(0) TCGA-55-6983-01 2 7170334 7170334 G A RNF144A Nonsense_Mutation p.W245* 0.06 TCGA-55-6983-01 2 86272749 86272749 G A POLR1A Silent p.I959I 0.10 TCGA-55-6983-01 3 156175266 156175266 G A KCNAB1 Missense_Mutation p.A128T 0.12 deleterious(0) probably_damaging(0.998) TCGA-55-6983-01 3 195000115 195000115 A G ACAP2 Missense_Mutation p.M760T 0.20 deleterious(0) possibly_damaging(0.615) TCGA-55-6983-01 3 42735266 42735266 G T HHATL Missense_Mutation p.P364Q 0.13 tolerated(0.45) benign(0.296) TCGA-55-6983-01 4 134073195 134073195 C G PCDH10 Missense_Mutation p.R634G 0.27 tolerated(0.34) probably_damaging(0.999) TCGA-55-6983-01 5 108382819 108382819 A G FER Missense_Mutation p.Y615C 0.15 deleterious(0.01) probably_damaging(1) TCGA-55-6983-01 5 149578887 149578887 C A SLC6A7 Silent p.I227I 0.26 TCGA-55-6983-01 5 169126453 169126453 G T DOCK2 Nonsense_Mutation p.G375* 0.18 TCGA-55-6983-01 5 176011494 176011494 G A CDHR2 Missense_Mutation p.G738S 0.23 tolerated(0.09) possibly_damaging(0.57) TCGA-55-6983-01 5 178540919 178540919 G T ADAMTS2 Silent p.I1195I 0.08 TCGA-55-6983-01 5 36066953 36066953 G T UGT3A2 5'UTR 0.15 TCGA-55-6983-01 5 72419152 72419152 G A TMEM171 5'UTR 0.09 TCGA-55-6983-01 5 75996968 75996968 G T IQGAP2 Missense_Mutation p.V1479L 0.13 tolerated(1) benign(0.013) TCGA-55-6983-01 6 31895895 31895895 G A CFB Nonsense_Mutation p.W70* 0.11 TCGA-55-6983-01 6 32803552 32803552 T A TAP2 Splice_Site p.X203_splice 0.09 TCGA-55-6983-01 6 56371588 56371588 C A DST Splice_Site p.X3791_splice 0.22 TCGA-55-6983-01 7 141537006 141537006 A C PRSS37 Missense_Mutation p.M158R 0.09 deleterious(0) probably_damaging(0.926) TCGA-55-6983-01 7 142180673 142180673 C A TRBV6-5 Silent p.L62L 0.04 TCGA-55-6983-01 7 20689732 20689732 C A ABCB5 Missense_Mutation p.Q432K 0.09 deleterious(0.01) possibly_damaging(0.563) TCGA-55-6983-01 7 20721241 20721241 T A ABCB5 Silent p.A607A 0.16 TCGA-55-6983-01 7 6862974 6862974 C T CCZ1B Silent p.S136S 0.12 TCGA-55-6983-01 7 91622330 91622330 A G AKAP9 Silent p.E179E 0.10 TCGA-55-6983-01 8 105261795 105261795 C T RIMS2 Missense_Mutation p.P1224S 0.08 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-55-6983-01 8 120252494 120252494 C T MAL2 Silent p.C131C 0.11 TCGA-55-6983-01 8 120594688 120594688 G T ENPP2 Silent p.G618G 0.15 TCGA-55-6983-01 8 145661703 145661703 T C TONSL Missense_Mutation p.S705G 0.06 tolerated(0.26) benign(0.004) TCGA-55-6983-01 8 27101314 27101314 C A STMN4 5'UTR 0.22 TCGA-55-6983-01 8 2824215 2824215 C A CSMD1 Missense_Mutation p.D2993Y 0.18 probably_damaging(0.945) TCGA-55-6983-01 8 3216716 3216716 C A CSMD1 Missense_Mutation p.G1088W 0.10 probably_damaging(1) TCGA-55-6983-01 8 72965039 72965039 T A RP11-383H13.1 3'UTR 0.16 TCGA-55-6983-01 8 77767139 77767139 G A ZFHX4 Missense_Mutation p.R2661K 0.15 probably_damaging(0.937) TCGA-55-6983-01 8 77768513 77768513 C A ZFHX4 Missense_Mutation p.P3119Q 0.21 probably_damaging(0.946) TCGA-55-6983-01 9 100245485 100245485 C T TDRD7 Missense_Mutation p.H923Y 0.20 deleterious(0) probably_damaging(0.996) TCGA-55-6983-01 9 119202889 119202889 T A ASTN2 Missense_Mutation p.R1210W 0.10 deleterious(0) unknown(0) TCGA-55-6983-01 9 119976964 119976964 G - ASTN2 Frame_Shift_Del p.Q230Sfs*89 0.14 TCGA-55-6983-01 9 134034776 134034776 C T NUP214 Missense_Mutation p.R815W 0.19 probably_damaging(0.968) TCGA-55-6983-01 9 140968458 140968458 G T CACNA1B Silent p.L1599L 0.21 TCGA-55-6983-01 9 32784340 32784340 C T TMEM215 Silent p.G53G 0.15 TCGA-55-6983-01 9 34371852 34371852 C T KIAA1161 Missense_Mutation p.D330N 0.08 tolerated(0.08) benign(0.01) TCGA-55-6983-01 X 136649338 136649338 C A ZIC3 Missense_Mutation p.P163H 0.29 deleterious(0) possibly_damaging(0.819) TCGA-55-6983-01 X 148037518 148037518 C A AFF2 Missense_Mutation p.P648Q 0.49 deleterious(0.03) probably_damaging(0.999) TCGA-55-6983-01 X 154159066 154159066 G A F8 Missense_Mutation p.P1000L 0.25 tolerated(0.16) benign(0.005) TCGA-55-6983-01 X 19362145 19362145 G A PDHA1 5'UTR 0.36 TCGA-55-6983-01 X 37027425 37027425 C G FAM47C Silent p.R314R 0.34 TCGA-55-6983-01 X 47041355 47041355 C - RBM10 Frame_Shift_Del p.D568Tfs*136 0.58 TCGA-55-6983-01 X 88008799 88008799 C A CPXCR1 Missense_Mutation p.H128Q 0.27 tolerated(0.22) benign(0.002) TCGA-55-6984-01 10 24924024 24924027 TTTG - ARHGAP21 Frame_Shift_Del p.Q92Efs*33 0.21 TCGA-55-6984-01 11 124252443 124252443 G T OR8B2 Missense_Mutation p.S266Y 0.13 deleterious_low_confidence(0.01) probably_damaging(0.975) TCGA-55-6984-01 11 62293257 62293257 T A AHNAK Missense_Mutation p.I2878F 0.19 possibly_damaging(0.572) TCGA-55-6984-01 12 122803778 122803778 C A CLIP1 Splice_Site p.X1122_splice 0.29 TCGA-55-6984-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.31 deleterious(0.02) possibly_damaging(0.773) TCGA-55-6984-01 12 90004244 90004265 TCGAAGTTTTGGCCAAATCTTG - ATP2B1 Frame_Shift_Del p.D756Efs*18 0.21 TCGA-55-6984-01 13 109518569 109518569 G A MYO16 Silent p.E446E 0.13 TCGA-55-6984-01 14 19563407 19563407 T G POTEG Silent p.T307T 0.13 TCGA-55-6984-01 19 54800084 54800084 G C LILRA3 Missense_Mutation p.P428A 0.25 deleterious(0.02) benign(0.009) TCGA-55-6984-01 1 145608466 145608466 C T POLR3C Missense_Mutation p.G114D 0.06 deleterious(0) probably_damaging(1) TCGA-55-6984-01 1 158576753 158576753 G A OR10Z1 Silent p.Q175Q 0.39 TCGA-55-6984-01 1 186094764 186094764 A T HMCN1 Silent p.G4176G 0.12 TCGA-55-6984-01 1 248636736 248636736 G T OR2T3 Missense_Mutation p.A29S 0.26 tolerated(0.82) benign(0.018) TCGA-55-6984-01 1 36915931 36915931 C T OSCP1 Missense_Mutation p.G14S 0.31 deleterious(0.03) possibly_damaging(0.659) TCGA-55-6984-01 1 65107576 65107576 G A CACHD1 Silent p.A309A 0.25 TCGA-55-6984-01 1 9323860 9323860 C T H6PD Silent p.L436L 0.16 TCGA-55-6984-01 20 32878564 32878564 T C AHCY Missense_Mutation p.I247V 0.22 deleterious_low_confidence(0) possibly_damaging(0.555) TCGA-55-6984-01 20 42333976 42333976 C T MYBL2 Missense_Mutation p.P495S 0.16 tolerated(0.05) possibly_damaging(0.562) TCGA-55-6984-01 20 52193293 52193293 G C ZNF217 Silent p.T670T 0.16 TCGA-55-6984-01 2 149447935 149447943 TATTCAGCG - EPC2 Splice_Site p.X103_splice 0.13 TCGA-55-6984-01 2 175244958 175244958 T A CIR1 Missense_Mutation p.N113I 0.19 deleterious(0.03) unknown(0) TCGA-55-6984-01 2 25967144 25967144 C T ASXL2 Missense_Mutation p.G688R 0.18 deleterious(0.01) probably_damaging(1) TCGA-55-6984-01 3 134090193 134090193 G A AMOTL2 Missense_Mutation p.T28M 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-6984-01 3 149040169 149040169 C A TM4SF18 Silent p.V155V 0.08 TCGA-55-6984-01 3 20156390 20156390 G T KAT2B Nonsense_Mutation p.E354* 0.21 TCGA-55-6984-01 4 170428265 170428265 C A NEK1 Missense_Mutation p.A644S 0.16 deleterious(0) probably_damaging(0.933) TCGA-55-6984-01 5 35654685 35654685 G A SPEF2 Missense_Mutation p.D279N 0.19 tolerated(0.12) benign(0.196) TCGA-55-6984-01 6 31170689 31170689 G A HCG27 3'UTR 0.22 TCGA-55-6984-01 7 107234412 107234412 A T BCAP29 Missense_Mutation p.E69V 0.21 deleterious(0) probably_damaging(0.999) TCGA-55-6984-01 7 143078812 143078812 C T ZYX Missense_Mutation p.P50S 0.20 tolerated(0.21) unknown(0) TCGA-55-6985-01 10 102539287 102539287 A T PAX2 Missense_Mutation p.H148L 0.38 deleterious(0.01) benign(0.043) TCGA-55-6985-01 10 102584444 102584444 C T PAX2 Missense_Mutation p.P343L 0.21 deleterious(0) probably_damaging(1) TCGA-55-6985-01 10 103346935 103346935 C A POLL Intron 0.23 TCGA-55-6985-01 10 103906707 103906707 C T PPRC1 Nonsense_Mutation p.R1320* 0.14 TCGA-55-6985-01 10 106128258 106128258 G T CCDC147 Missense_Mutation p.Q290H 0.22 deleterious(0.03) benign(0.112) TCGA-55-6985-01 10 125639736 125639736 C G CPXM2 Missense_Mutation p.V132L 0.19 tolerated(0.34) benign(0.003) TCGA-55-6985-01 10 135368920 135368920 G T SYCE1 Missense_Mutation p.H285N 0.23 tolerated(0.3) benign(0.302) TCGA-55-6985-01 10 26939566 26939566 G T LINC00202-2 RNA 0.25 TCGA-55-6985-01 10 29840143 29840143 T A SVIL Missense_Mutation p.Q70H 0.19 deleterious(0.04) benign(0.009) TCGA-55-6985-01 10 50946118 50946118 C A OGDHL Missense_Mutation p.A798S 0.11 tolerated(0.92) benign(0.009) TCGA-55-6985-01 10 55581994 55581994 G A PCDH15 Missense_Mutation p.P1833L 0.09 tolerated_low_confidence(0.39) unknown(0) TCGA-55-6985-01 10 6264857 6264857 A C PFKFB3 Missense_Mutation p.M375L 0.14 benign(0.206) TCGA-55-6985-01 10 70451626 70451626 G C TET1 3'UTR 0.27 TCGA-55-6985-01 10 86004867 86004867 G T RGR Silent p.L7L 0.12 TCGA-55-6985-01 10 88203071 88203071 G T WAPAL Nonsense_Mutation p.Y1124* 0.13 TCGA-55-6985-01 10 97423790 97423790 T C TCTN3 3'UTR 0.12 TCGA-55-6985-01 11 10011043 10011043 C A SBF2 Splice_Site p.X465_splice 0.38 TCGA-55-6985-01 11 1017315 1017315 G C MUC6 Missense_Mutation p.P1829R 0.06 probably_damaging(0.987) TCGA-55-6985-01 11 111915913 111915913 A G DLAT Missense_Mutation p.T417A 0.29 tolerated(0.91) benign(0.001) TCGA-55-6985-01 11 113215031 113215031 G T TTC12 Missense_Mutation p.R341S 0.40 tolerated(0.35) benign(0.002) TCGA-55-6985-01 11 113712397 113712397 C A USP28 Missense_Mutation p.R121I 0.08 deleterious(0) benign(0.127) TCGA-55-6985-01 11 117389381 117389381 G C DSCAML1 Missense_Mutation p.P497R 0.12 deleterious(0.04) probably_damaging(1) TCGA-55-6985-01 11 118366490 118366490 A T KMT2A Missense_Mutation p.E1813D 0.05 benign(0.009) TCGA-55-6985-01 11 121028721 121028721 G T TECTA Missense_Mutation p.G1493C 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-55-6985-01 11 121385030 121385030 G A SORL1 Missense_Mutation p.R404K 0.30 deleterious(0.03) probably_damaging(0.992) TCGA-55-6985-01 11 123597077 123597077 T A ZNF202 Silent p.T525T 0.31 TCGA-55-6985-01 11 123900990 123900990 G T OR10G8 Missense_Mutation p.V221F 0.22 deleterious(0.01) probably_damaging(0.915) TCGA-55-6985-01 11 1268677 1268677 C A MUC5B Missense_Mutation p.P3523T 0.12 unknown(0) TCGA-55-6985-01 11 1269326 1269326 C G MUC5B Missense_Mutation p.A3739G 0.20 unknown(0) TCGA-55-6985-01 11 1271630 1271630 T A MUC5B Missense_Mutation p.L4507H 0.11 benign(0.012) TCGA-55-6985-01 11 1580211 1580211 G A DUSP8 Missense_Mutation p.L149F 0.14 deleterious(0.05) possibly_damaging(0.577) TCGA-55-6985-01 11 17741497 17741497 C T MYOD1 Silent p.L56L 0.23 TCGA-55-6985-01 11 18195341 18195341 C A MRGPRX4 Missense_Mutation p.P180T 0.07 tolerated(1) benign(0) TCGA-55-6985-01 11 18731050 18731050 G T IGSF22 Missense_Mutation p.T961K 0.31 tolerated(0.11) probably_damaging(0.996) TCGA-55-6985-01 11 20066649 20066649 C A NAV2 Missense_Mutation p.T1135K 0.19 tolerated(0.42) benign(0.06) TCGA-55-6985-01 11 308242 308242 C T IFITM2 Missense_Mutation p.P17L 0.10 deleterious(0.05) benign(0.018) TCGA-55-6985-01 11 30914539 30914539 G A DCDC1 Silent p.H1633H 0.28 TCGA-55-6985-01 11 33589742 33589742 G A KIAA1549L Missense_Mutation p.R1103Q 0.14 deleterious(0) probably_damaging(1) TCGA-55-6985-01 11 35640710 35640710 C T FJX1 Missense_Mutation p.R176C 0.31 deleterious(0) probably_damaging(0.972) TCGA-55-6985-01 11 4870337 4870337 C A OR51S1 Missense_Mutation p.W34C 0.29 deleterious(0) possibly_damaging(0.873) TCGA-55-6985-01 11 4903521 4903521 C A OR51T1 Missense_Mutation p.P158Q 0.34 deleterious(0) probably_damaging(1) TCGA-55-6985-01 11 5080858 5080858 C T OR52E2 5'Flank 0.10 TCGA-55-6985-01 11 5246840 5246840 G T HBB Missense_Mutation p.H144Q 0.16 tolerated(0.08) benign(0.157) TCGA-55-6985-01 11 55432968 55432968 G C OR4C6 Missense_Mutation p.G109A 0.15 deleterious_low_confidence(0.02) benign(0.018) TCGA-55-6985-01 11 55587841 55587841 C A OR5D18 Missense_Mutation p.L246M 0.10 deleterious(0.02) possibly_damaging(0.702) TCGA-55-6985-01 11 55587842 55587842 T A OR5D18 Missense_Mutation p.L246Q 0.08 deleterious(0) probably_damaging(0.982) TCGA-55-6985-01 11 55890132 55890132 C A OR8H3 Missense_Mutation p.T95K 0.06 tolerated(0.29) benign(0.002) TCGA-55-6985-01 11 57003413 57003413 G T APLNR Missense_Mutation p.P356T 0.41 tolerated_low_confidence(0.33) benign(0.054) TCGA-55-6985-01 11 58275275 58275275 A T OR5B21 Missense_Mutation p.F102I 0.29 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-55-6985-01 11 5969347 5969347 C A OR56A3 Silent p.T257T 0.14 TCGA-55-6985-01 11 60198297 60198297 C A MS4A5 Missense_Mutation p.T61N 0.21 tolerated(1) benign(0.002) TCGA-55-6985-01 11 60563057 60563057 G T MS4A10 Missense_Mutation p.L174F 0.21 deleterious(0) probably_damaging(0.996) TCGA-55-6985-01 11 62462126 62462126 G A BSCL2 Missense_Mutation p.P182S 0.26 deleterious(0) possibly_damaging(0.783) TCGA-55-6985-01 11 62462127 62462127 G A BSCL2 Silent p.S181S 0.25 TCGA-55-6985-01 11 65828200 65828200 G T SF3B2 Nonsense_Mutation p.E593* 0.14 TCGA-55-6985-01 11 6622385 6622385 C T RRP8 Missense_Mutation p.R304H 0.11 deleterious(0.03) benign(0.022) TCGA-55-6985-01 11 6653038 6653038 C A DCHS1 Nonsense_Mutation p.E1162* 0.35 TCGA-55-6985-01 11 68748403 68748403 G T MRGPRD Missense_Mutation p.S18Y 0.21 tolerated(0.48) benign(0.165) TCGA-55-6985-01 11 6891597 6891597 C G OR10A2 Silent p.S204S 0.13 TCGA-55-6985-01 11 7079531 7079531 C A NLRP14 Missense_Mutation p.T828K 0.34 deleterious(0) probably_damaging(0.989) TCGA-55-6985-01 11 77064628 77064628 C A PAK1 Silent p.V263V 0.38 TCGA-55-6985-01 11 78369359 78369359 T A TENM4 Missense_Mutation p.E2685V 0.22 deleterious(0) possibly_damaging(0.788) TCGA-55-6985-01 11 8951044 8951044 G T C11orf16 Missense_Mutation p.D68E 0.20 tolerated(0.07) benign(0.438) TCGA-55-6985-01 11 92498234 92498234 C A FAT3 Missense_Mutation p.P1392T 0.30 benign(0.038) TCGA-55-6985-01 11 94862606 94862606 G C ENDOD1 Missense_Mutation p.A456P 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-6985-01 12 104149217 104149217 G T STAB2 Missense_Mutation p.M2284I 0.09 deleterious(0.01) benign(0.053) TCGA-55-6985-01 12 108589825 108589825 G T WSCD2 Silent p.L72L 0.12 TCGA-55-6985-01 12 10870707 10870707 C T YBX3 Missense_Mutation p.E114K 0.31 deleterious(0.02) possibly_damaging(0.627) TCGA-55-6985-01 12 108985845 108985845 G T TMEM119 Silent p.A105A 0.18 TCGA-55-6985-01 12 132490798 132490798 C T EP400 Missense_Mutation p.A1026V 0.20 unknown(0) TCGA-55-6985-01 12 21918643 21918643 G T KCNJ8 3'UTR 0.33 TCGA-55-6985-01 12 29460703 29460703 A C FAR2 Silent p.R220R 0.34 TCGA-55-6985-01 12 32735171 32735171 G C FGD4 Missense_Mutation p.D124H 0.07 deleterious_low_confidence(0.04) benign(0.003) TCGA-55-6985-01 12 32786555 32786555 A C FGD4 Missense_Mutation p.K612Q 0.18 tolerated(0.14) benign(0.314) TCGA-55-6985-01 12 39703569 39703569 C A KIF21A Splice_Site p.X1366_splice 0.36 TCGA-55-6985-01 12 43771344 43771344 T C ADAMTS20 Missense_Mutation p.S1607G 0.19 tolerated(1) benign(0.008) TCGA-55-6985-01 12 51281348 51281348 G A TMPRSS12 3'UTR 0.10 TCGA-55-6985-01 12 5154245 5154245 C A KCNA5 Missense_Mutation p.T311K 0.22 tolerated(0.09) probably_damaging(0.932) TCGA-55-6985-01 12 51753114 51753114 C A GALNT6 Silent p.V390V 0.21 TCGA-55-6985-01 12 52843418 52843418 C T KRT6B Splice_Site p.X305_splice 0.16 TCGA-55-6985-01 12 52913586 52913586 C A KRT5 Missense_Mutation p.R165S 0.22 deleterious(0) possibly_damaging(0.77) TCGA-55-6985-01 12 57865660 57865660 A T GLI1 Missense_Mutation p.Q1046L 0.22 deleterious(0.01) probably_damaging(0.983) TCGA-55-6985-01 12 58019026 58019026 G T SLC26A10 Missense_Mutation p.E462D 0.14 deleterious(0.03) benign(0.42) TCGA-55-6985-01 12 63541318 63541318 C A AVPR1A Missense_Mutation p.V360F 0.15 tolerated(0.2) benign(0.005) TCGA-55-6985-01 12 64456799 64456799 A T SRGAP1 Missense_Mutation p.I302F 0.16 deleterious(0) benign(0.129) TCGA-55-6985-01 12 6857982 6857982 C A MLF2 Missense_Mutation p.Q242H 0.20 tolerated(0.05) benign(0.359) TCGA-55-6985-01 12 71976302 71976302 A T LGR5 Missense_Mutation p.Q540L 0.21 deleterious(0) benign(0.185) TCGA-55-6985-01 12 7286289 7286289 A G CLSTN3 Missense_Mutation p.K103R 0.24 tolerated(0.27) benign(0.026) TCGA-55-6985-01 12 73046831 73046831 T G TRHDE Missense_Mutation p.L915R 0.26 tolerated(1) possibly_damaging(0.845) TCGA-55-6985-01 12 78522583 78522583 C A NAV3 Missense_Mutation p.P1460T 0.20 deleterious(0) probably_damaging(1) TCGA-55-6985-01 12 81472166 81472166 C T ACSS3 Silent p.P89P 0.12 TCGA-55-6985-01 12 81568685 81568685 G T ACSS3 Missense_Mutation p.G406V 0.11 deleterious(0.05) benign(0.34) TCGA-55-6985-01 12 8670779 8670779 A C CLEC4D Silent p.S47S 0.46 TCGA-55-6985-01 12 9004398 9004398 G A A2ML1 Silent p.A751A 0.17 TCGA-55-6985-01 12 96707213 96707213 T C CDK17 Silent p.L101L 0.19 TCGA-55-6985-01 12 99102470 99102470 A T APAF1 Silent p.I943I 0.19 TCGA-55-6985-01 13 25831917 25831917 C A MTMR6 Missense_Mutation p.R309L 0.07 deleterious(0) benign(0.352) TCGA-55-6985-01 13 26273477 26273477 G T ATP8A2 Missense_Mutation p.C793F 0.32 deleterious(0) probably_damaging(1) TCGA-55-6985-01 13 32835909 32835909 G T FRY Nonsense_Mutation p.E2525* 0.10 TCGA-55-6985-01 13 38154116 38154116 G C POSTN Missense_Mutation p.S514R 0.11 deleterious(0.01) possibly_damaging(0.598) TCGA-55-6985-01 13 39265078 39265078 G T FREM2 Missense_Mutation p.M1199I 0.14 tolerated(0.21) benign(0.004) TCGA-55-6985-01 13 39265079 39265079 G A FREM2 Missense_Mutation p.V1200M 0.15 deleterious(0) probably_damaging(0.993) TCGA-55-6985-01 13 53254252 53254252 G T SUGT1 Missense_Mutation p.G320C 0.11 deleterious(0) probably_damaging(1) TCGA-55-6985-01 13 53420780 53420780 G T PCDH8 Missense_Mutation p.R598S 0.50 tolerated(0.06) benign(0.038) TCGA-55-6985-01 13 70681342 70681342 C G KLHL1 Missense_Mutation p.G164R 0.29 tolerated_low_confidence(0.55) benign(0.002) TCGA-55-6985-01 13 96638604 96638604 G A UGGT2 Silent p.N338N 0.16 TCGA-55-6985-01 13 97485064 97485064 A T HS6ST3 Missense_Mutation p.N343I 0.15 tolerated(0.14) benign(0.253) TCGA-55-6985-01 13 97485066 97485066 A T HS6ST3 Missense_Mutation p.N344Y 0.15 deleterious(0) probably_damaging(1) TCGA-55-6985-01 14 100118736 100118736 G C HHIPL1 Missense_Mutation p.R144T 0.17 tolerated(0.15) benign(0.155) TCGA-55-6985-01 14 102027990 102027990 C T DIO3 Missense_Mutation p.L53F 0.08 tolerated(0.2) probably_damaging(0.996) TCGA-55-6985-01 14 105415909 105415909 G T AHNAK2 Missense_Mutation p.A1960D 0.20 benign(0.197) TCGA-55-6985-01 14 106204126 106204126 G A IGHG1 Silent p.Y391Y 0.18 TCGA-55-6985-01 14 20215674 20215674 C A OR4Q3 Missense_Mutation p.L30I 0.22 tolerated(0.56) benign(0.001) TCGA-55-6985-01 14 22217500 22217500 C G TRAV5 Missense_Mutation p.F9L 0.21 tolerated(0.38) benign(0.084) TCGA-55-6985-01 14 23885422 23885422 C A MYH7 Nonsense_Mutation p.E1582* 0.21 TCGA-55-6985-01 14 23886893 23886893 T A MYH7 Missense_Mutation p.K1391M 0.12 deleterious(0) probably_damaging(0.998) TCGA-55-6985-01 14 31071081 31071081 G T G2E3 Missense_Mutation p.R286S 0.16 deleterious(0.02) probably_damaging(0.962) TCGA-55-6985-01 14 38724382 38724382 G A CLEC14A Silent p.D282D 0.08 TCGA-55-6985-01 14 42360569 42360569 G T LRFN5 Missense_Mutation p.R501I 0.22 deleterious(0) probably_damaging(0.949) TCGA-55-6985-01 14 45642334 45642334 C T FANCM Missense_Mutation p.T746I 0.22 deleterious(0.02) benign(0.077) TCGA-55-6985-01 14 56104545 56104545 C T KTN1 Missense_Mutation p.H589Y 0.23 deleterious(0.02) probably_damaging(0.964) TCGA-55-6985-01 14 60193775 60193775 G T RTN1 Missense_Mutation p.L543M 0.38 tolerated(0.12) benign(0.129) TCGA-55-6985-01 14 63416895 63416895 G C KCNH5 Missense_Mutation p.T442R 0.25 deleterious(0) probably_damaging(0.991) TCGA-55-6985-01 14 63417223 63417223 G T KCNH5 Missense_Mutation p.R333S 0.22 deleterious(0) probably_damaging(0.999) TCGA-55-6985-01 14 68191237 68191237 G C RDH12 Missense_Mutation p.G39A 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-55-6985-01 14 68191238 68191238 C A RDH12 Silent p.G39G 0.16 TCGA-55-6985-01 14 70497026 70497026 C T SMOC1 3'UTR 0.20 TCGA-55-6985-01 14 70712911 70712911 A T ADAM21P1 RNA 0.11 TCGA-55-6985-01 14 70713412 70713412 A G ADAM21P1 RNA 0.17 TCGA-55-6985-01 14 75376737 75376737 A G RPS6KL1 Missense_Mutation p.L260P 0.20 tolerated(0.25) benign(0.004) TCGA-55-6985-01 14 88477406 88477406 A T GPR65 Missense_Mutation p.D72V 0.10 deleterious(0.02) possibly_damaging(0.724) TCGA-55-6985-01 14 88651918 88651918 C A KCNK10 Silent p.R531R 0.15 TCGA-55-6985-01 14 94780929 94780929 G C SERPINA6 Silent p.T19T 0.17 TCGA-55-6985-01 14 95884365 95884365 T C SYNE3 Splice_Site p.X910_splice 0.20 TCGA-55-6985-01 15 28000494 28000494 T A OCA2 3'UTR 0.17 TCGA-55-6985-01 15 31357299 31357299 G T TRPM1 Intron 0.22 TCGA-55-6985-01 15 40751539 40751539 C T BAHD1 Silent p.S292S 0.08 TCGA-55-6985-01 15 50534992 50534992 G T HDC Missense_Mutation p.P485H 0.21 deleterious(0) benign(0.149) TCGA-55-6985-01 15 50534993 50534993 G T HDC Missense_Mutation p.P485T 0.21 tolerated(0.1) benign(0.001) TCGA-55-6985-01 15 51834664 51834664 C A DMXL2 Missense_Mutation p.R324M 0.17 deleterious(0.02) probably_damaging(0.914) TCGA-55-6985-01 15 60745778 60745778 G A NARG2 Intron 0.17 TCGA-55-6985-01 15 62265686 62265686 C A VPS13C Missense_Mutation p.G862C 0.16 deleterious(0.04) possibly_damaging(0.469) TCGA-55-6985-01 15 67879196 67879196 G T MAP2K5 Missense_Mutation p.A126S 0.24 tolerated(0.26) benign(0.008) TCGA-55-6985-01 15 68500742 68500742 C A CLN6 Silent p.L224L 0.17 TCGA-55-6985-01 15 68582377 68582377 C A FEM1B Silent p.A227A 0.24 TCGA-55-6985-01 15 81578129 81578129 C A IL16 Silent p.P430P 0.17 TCGA-55-6985-01 15 84611395 84611395 G A ADAMTSL3 Missense_Mutation p.G722E 0.21 deleterious(0) probably_damaging(1) TCGA-55-6985-01 15 91421384 91421384 G T FURIN Missense_Mutation p.E230D 0.18 tolerated(1) benign(0.007) TCGA-55-6985-01 15 99029180 99029180 A T FAM169B 5'UTR 0.20 TCGA-55-6985-01 16 15826436 15826436 A T MYH11 Silent p.L1219L 0.11 TCGA-55-6985-01 16 19562548 19562548 G T CCP110 Missense_Mutation p.R1006L 0.16 deleterious(0.01) possibly_damaging(0.858) TCGA-55-6985-01 16 20352638 20352638 C A UMOD Missense_Mutation p.G451V 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-55-6985-01 16 20441028 20441028 C A ACSM5 Missense_Mutation p.L344M 0.16 tolerated(0.07) benign(0.257) TCGA-55-6985-01 16 20554585 20554585 C A ACSM2B Splice_Site p.X428_splice 0.14 TCGA-55-6985-01 16 23203735 23203735 G T SCNN1G Missense_Mutation p.Q227H 0.12 tolerated(0.12) probably_damaging(0.918) TCGA-55-6985-01 16 28509075 28509075 G A APOBR Missense_Mutation p.G905R 0.42 tolerated(0.06) probably_damaging(0.996) TCGA-55-6985-01 16 31382660 31382660 G T ITGAX Missense_Mutation p.R616I 0.24 deleterious(0.01) probably_damaging(1) TCGA-55-6985-01 16 31476359 31476359 A T ARMC5 Intron 0.21 TCGA-55-6985-01 16 3283746 3283746 C A ZNF200 Missense_Mutation p.A4S 0.16 deleterious_low_confidence(0.04) unknown(0) TCGA-55-6985-01 16 70542344 70542344 C A COG4 Silent p.L342L 0.30 TCGA-55-6985-01 16 77918688 77918688 G A VAT1L Missense_Mutation p.A356T 0.25 tolerated(0.08) probably_damaging(0.978) TCGA-55-6985-01 16 81157253 81157253 C A PKD1L2 Intron 0.10 TCGA-55-6985-01 16 85100670 85100670 C G KIAA0513 5'UTR 0.12 TCGA-55-6985-01 16 87445200 87445200 G C ZCCHC14 Missense_Mutation p.L906V 0.14 tolerated(0.57) unknown(0) TCGA-55-6985-01 17 10399347 10399347 C A MYH1 Nonsense_Mutation p.E1697* 0.14 TCGA-55-6985-01 17 11835517 11835517 G A DNAH9 Missense_Mutation p.A4098T 0.23 benign(0.009) TCGA-55-6985-01 17 1384168 1384168 C A MYO1C Silent p.V213V 0.10 TCGA-55-6985-01 17 1384169 1384169 A G MYO1C Missense_Mutation p.V213A 0.08 deleterious(0.02) possibly_damaging(0.814) TCGA-55-6985-01 17 16691332 16691332 G T CCDC144A 3'UTR 0.17 TCGA-55-6985-01 17 27251018 27251018 C T PHF12 Silent p.R208R 0.31 TCGA-55-6985-01 17 29632168 29632168 G T EVI2B Missense_Mutation p.Q154K 0.15 tolerated(0.63) benign(0.007) TCGA-55-6985-01 17 29632169 29632169 G T EVI2B Silent p.V153V 0.16 TCGA-55-6985-01 17 35627714 35627714 G A ACACA Silent p.A349A 0.20 TCGA-55-6985-01 17 38978715 38978715 G T KRT10 Silent p.G41G 0.23 TCGA-55-6985-01 17 39537424 39537424 C A KRT34 Missense_Mutation p.D200Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-6985-01 17 39596834 39596834 G A KRT38 Missense_Mutation p.R114C 0.21 deleterious(0) benign(0.212) TCGA-55-6985-01 17 39661464 39661464 G A KRT13 Silent p.D113D 0.19 TCGA-55-6985-01 17 42992462 42992462 G C GFAP Silent p.T131T 0.15 TCGA-55-6985-01 17 56166646 56166646 C T DYNLL2 3'UTR 0.16 TCGA-55-6985-01 17 57275120 57275120 G A CTD-2510F5.6 Silent p.V35V 0.09 TCGA-55-6985-01 17 60042440 60042440 C A MED13 Missense_Mutation p.A1591S 0.21 tolerated(1) benign(0) TCGA-55-6985-01 17 60460396 60460396 C G EFCAB3 Missense_Mutation p.P71R 0.21 deleterious(0) probably_damaging(0.994) TCGA-55-6985-01 17 60749477 60749477 G C MRC2 Silent p.R475R 0.15 TCGA-55-6985-01 17 62018249 62018249 G T SCN4A Missense_Mutation p.A1798E 0.38 tolerated_low_confidence(1) benign(0.013) TCGA-55-6985-01 17 67022604 67022604 C T ABCA9 Silent p.R685R 0.04 TCGA-55-6985-01 17 7224528 7224528 C A NEURL4 Missense_Mutation p.R1088I 0.31 tolerated(0.37) benign(0.001) TCGA-55-6985-01 17 72619802 72619802 C A CD300E 5'Flank 0.19 TCGA-55-6985-01 17 73647204 73647204 C A RECQL5 Intron 0.25 TCGA-55-6985-01 17 74158669 74158669 A G RNF157 Silent p.Y252Y 0.29 TCGA-55-6985-01 17 7574026 7574026 C A TP53 Missense_Mutation p.G334V 0.25 deleterious(0) probably_damaging(0.973) TCGA-55-6985-01 17 79234147 79234147 G A SLC38A10 Silent p.T393T 0.24 TCGA-55-6985-01 17 80684833 80684833 A G FN3KRP Missense_Mutation p.Y239C 0.22 deleterious(0) probably_damaging(0.999) TCGA-55-6985-01 18 10681740 10681740 G T PIEZO2 Missense_Mutation p.T2453K 0.14 deleterious(0) benign(0.105) TCGA-55-6985-01 18 28986078 28986078 C A DSG4 Missense_Mutation p.P559T 0.13 tolerated(0.26) benign(0.076) TCGA-55-6985-01 18 31319095 31319095 C A ASXL3 Nonsense_Mutation p.S576* 0.32 TCGA-55-6985-01 18 31324912 31324912 T A ASXL3 Silent p.S1700S 0.10 TCGA-55-6985-01 18 50451740 50451740 G T DCC Missense_Mutation p.V329F 0.17 deleterious(0) probably_damaging(0.987) TCGA-55-6985-01 18 67794893 67794893 G A RTTN Silent p.L1076L 0.18 TCGA-55-6985-01 18 70461640 70461640 C A NETO1 Splice_Site p.X157_splice 0.18 TCGA-55-6985-01 18 73000452 73000452 G A TSHZ1 Silent p.E985E 0.18 TCGA-55-6985-01 18 743036 743036 T C YES1 Silent p.P314P 0.19 TCGA-55-6985-01 18 9254231 9254231 A T ANKRD12 Silent p.V322V 0.13 TCGA-55-6985-01 19 13423523 13423523 C A CACNA1A Missense_Mutation p.R543L 0.28 possibly_damaging(0.858) TCGA-55-6985-01 19 13423524 13423524 G A CACNA1A Missense_Mutation p.R543W 0.28 probably_damaging(0.942) TCGA-55-6985-01 19 1507362 1507362 C A ADAMTSL5 Missense_Mutation p.W244L 0.24 deleterious(0.04) benign(0.35) TCGA-55-6985-01 19 17922725 17922725 G T B3GNT3 Nonsense_Mutation p.E305* 0.27 TCGA-55-6985-01 19 18332994 18332994 A G PDE4C Missense_Mutation p.Y128H 0.14 deleterious(0.04) benign(0.004) TCGA-55-6985-01 19 19344651 19344651 G C NCAN Missense_Mutation p.A1025P 0.32 tolerated(0.07) benign(0.006) TCGA-55-6985-01 19 23159841 23159841 A T ZNF728 Missense_Mutation p.L100M 0.30 deleterious(0.04) possibly_damaging(0.9) TCGA-55-6985-01 19 2389903 2389903 C G TMPRSS9 Silent p.V40V 0.09 TCGA-55-6985-01 19 30934612 30934612 C A ZNF536 Missense_Mutation p.P48H 0.21 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-55-6985-01 19 31040321 31040321 G T ZNF536 Silent p.L1265L 0.41 TCGA-55-6985-01 19 32847554 32847554 C T ZNF507 Silent p.H720H 0.17 TCGA-55-6985-01 19 36350480 36350480 G T KIRREL2 Missense_Mutation p.R207L 0.14 tolerated(0.59) benign(0.088) TCGA-55-6985-01 19 36508345 36508345 C A CLIP3 Nonsense_Mutation p.G487* 0.22 TCGA-55-6985-01 19 37005059 37005059 C A ZNF260 Missense_Mutation p.G361V 0.20 tolerated(0.07) probably_damaging(0.995) TCGA-55-6985-01 19 37644496 37644496 C A ZNF585A Missense_Mutation p.W47L 0.12 tolerated(0.08) benign(0.001) TCGA-55-6985-01 19 38984999 38984999 G A RYR1 Silent p.L2094L 0.21 TCGA-55-6985-01 19 43099055 43099055 G C CEACAM8 5'UTR 0.23 TCGA-55-6985-01 19 43858498 43858498 C T CD177 Silent p.N111N 0.07 TCGA-55-6985-01 19 45295768 45295768 G T CBLC Missense_Mutation p.W378C 0.08 deleterious(0.03) probably_damaging(0.991) TCGA-55-6985-01 19 47231253 47231253 C - STRN4 Frame_Shift_Del p.V351Sfs*20 0.14 TCGA-55-6985-01 19 51628303 51628303 G A SIGLEC9 Silent p.T24T 0.22 TCGA-55-6985-01 19 51629378 51629378 C A SIGLEC9 Missense_Mutation p.D247E 0.20 tolerated(0.14) benign(0.028) TCGA-55-6985-01 19 52034735 52034735 G T SIGLEC6 Missense_Mutation p.P36T 0.16 tolerated(0.29) benign(0.158) TCGA-55-6985-01 19 52403422 52403422 C A ZNF649 5'UTR 0.17 TCGA-55-6985-01 19 5265155 5265155 C G PTPRS Missense_Mutation p.K144N 0.13 deleterious(0) probably_damaging(0.995) TCGA-55-6985-01 19 53770573 53770573 A T VN1R4 Missense_Mutation p.W116R 0.10 deleterious(0.01) benign(0.333) TCGA-55-6985-01 19 54313203 54313203 C A NLRP12 Missense_Mutation p.E570D 0.15 tolerated(0.08) benign(0.036) TCGA-55-6985-01 19 55105928 55105928 C A LILRA1 Silent p.T19T 0.30 TCGA-55-6985-01 19 55294936 55294936 A T KIR2DL1 Splice_Site p.X273_splice 0.13 TCGA-55-6985-01 19 55354358 55354358 C A KIR2DS4 Missense_Mutation p.N226K 0.17 deleterious_low_confidence(0) benign(0.05) TCGA-55-6985-01 19 55385709 55385709 G T FCAR 5'Flank 0.15 TCGA-55-6985-01 19 55450411 55450411 C G NLRP7 Missense_Mutation p.K592N 0.15 tolerated(0.1) benign(0.258) TCGA-55-6985-01 19 55450426 55450426 C A NLRP7 Silent p.V587V 0.17 TCGA-55-6985-01 19 55912895 55912895 C T UBE2S Missense_Mutation p.G193D 0.12 deleterious(0.02) probably_damaging(0.997) TCGA-55-6985-01 19 56413443 56413443 C A NLRP13 Missense_Mutation p.C916F 0.16 deleterious(0) possibly_damaging(0.802) TCGA-55-6985-01 19 56490889 56490891 CGA TG NLRP8 Frame_Shift_Del p.E1003Gfs*22 0.15 TCGA-55-6985-01 19 57328461 57328461 A T PEG3 Missense_Mutation p.M450K 0.16 tolerated(0.18) benign(0.02) TCGA-55-6985-01 19 5844780 5844780 A G FUT3 Missense_Mutation p.L24P 0.19 deleterious(0.02) probably_damaging(0.992) TCGA-55-6985-01 19 58965140 58965140 C T ZNF324B Silent p.A24A 0.14 TCGA-55-6985-01 19 5915067 5915067 C G CAPS Silent p.A126A 0.12 TCGA-55-6985-01 19 619717 619717 G A POLRMT Nonsense_Mutation p.Q979* 0.09 TCGA-55-6985-01 19 6495189 6495189 C T TUBB4A Missense_Mutation p.E441K 0.18 tolerated_low_confidence(0.05) unknown(0) TCGA-55-6985-01 19 8651527 8651527 C A ADAMTS10 Missense_Mutation p.G773V 0.14 deleterious(0) possibly_damaging(0.602) TCGA-55-6985-01 19 8651528 8651528 C G ADAMTS10 Missense_Mutation p.G773R 0.14 deleterious(0) possibly_damaging(0.876) TCGA-55-6985-01 19 9061767 9061767 G C MUC16 Missense_Mutation p.S8560C 0.24 unknown(0) TCGA-55-6985-01 19 9088580 9088580 A G MUC16 Missense_Mutation p.S1079P 0.08 unknown(0) TCGA-55-6985-01 1 103354185 103354185 C A COL11A1 Missense_Mutation p.G1519V 0.38 unknown(0) TCGA-55-6985-01 1 11008728 11008728 C A C1orf127 Missense_Mutation p.E488D 0.15 tolerated(0.58) possibly_damaging(0.627) TCGA-55-6985-01 1 110581882 110581882 G T STRIP1 Missense_Mutation p.R138S 0.16 tolerated(0.06) benign(0.328) TCGA-55-6985-01 1 13036621 13036621 C A PRAMEF22 Missense_Mutation p.S231R 0.11 deleterious(0) possibly_damaging(0.69) TCGA-55-6985-01 1 147230977 147230977 C A GJA5 Nonsense_Mutation p.E124* 0.17 TCGA-55-6985-01 1 151338815 151338815 T A SELENBP1 Missense_Mutation p.D260V 0.17 tolerated(0.05) benign(0.172) TCGA-55-6985-01 1 152057599 152057599 G T TCHHL1 Missense_Mutation p.S853R 0.18 tolerated(0.27) benign(0.005) TCGA-55-6985-01 1 152280768 152280768 T C FLG Silent p.Q2198Q 0.03 TCGA-55-6985-01 1 152326682 152326682 G T FLG2 Missense_Mutation p.Q1194K 0.18 unknown(0) TCGA-55-6985-01 1 153963616 153963616 C T RPS27 Missense_Mutation p.S11F 0.32 deleterious(0.03) benign(0.03) TCGA-55-6985-01 1 156640315 156640315 C A NES Missense_Mutation p.S1222I 0.19 deleterious(0.02) possibly_damaging(0.855) TCGA-55-6985-01 1 156902428 156902428 C A LRRC71 Intron 0.23 TCGA-55-6985-01 1 157670328 157670328 C A FCRL3 5'UTR 0.28 TCGA-55-6985-01 1 157771743 157771743 C A FCRL1 Missense_Mutation p.G283V 0.19 tolerated(0.08) benign(0.275) TCGA-55-6985-01 1 158687441 158687441 G A OR6K3 Silent p.I155I 0.14 TCGA-55-6985-01 1 158687910 158687910 C A OR6K3 5'Flank 0.24 TCGA-55-6985-01 1 160850418 160850418 G A ITLN1 Silent p.D215D 0.08 TCGA-55-6985-01 1 161188716 161188716 G T FCER1G Nonsense_Mutation p.E82* 0.13 TCGA-55-6985-01 1 161953396 161953396 G T OLFML2B 3'UTR 0.28 TCGA-55-6985-01 1 166904624 166904624 C T ILDR2 Missense_Mutation p.G265E 0.14 tolerated(0.12) possibly_damaging(0.649) TCGA-55-6985-01 1 167088547 167088547 G C DUSP27 Missense_Mutation p.A167P 0.26 deleterious(0) probably_damaging(0.999) TCGA-55-6985-01 1 167095924 167095924 A T DUSP27 Missense_Mutation p.D519V 0.27 deleterious(0) probably_damaging(0.915) TCGA-55-6985-01 1 176740128 176740128 T A PAPPA2 Silent p.L1509L 0.26 TCGA-55-6985-01 1 176913034 176913034 G T ASTN1 Missense_Mutation p.F790L 0.22 tolerated(1) benign(0.178) TCGA-55-6985-01 1 176993800 176993800 C T ASTN1 Missense_Mutation p.G397S 0.18 tolerated(0.31) benign(0.006) TCGA-55-6985-01 1 181620521 181620521 C T CACNA1E Silent p.P333P 0.12 TCGA-55-6985-01 1 196695642 196695642 G T CFH Missense_Mutation p.G639V 0.32 deleterious(0) probably_damaging(1) TCGA-55-6985-01 1 196876619 196876619 A T CFHR4 Nonsense_Mutation p.R263* 0.15 TCGA-55-6985-01 1 200818117 200818117 G T CAMSAP2 Silent p.R740R 0.17 TCGA-55-6985-01 1 201027603 201027603 G A CACNA1S Missense_Mutation p.P1181L 0.21 deleterious(0.04) probably_damaging(0.924) TCGA-55-6985-01 1 202288091 202288091 G - LGR6 Frame_Shift_Del p.P889Lfs*11 0.24 TCGA-55-6985-01 1 215408495 215408495 C A KCNK2 3'UTR 0.24 TCGA-55-6985-01 1 215775296 215775296 G C KCTD3 Missense_Mutation p.D341H 0.30 deleterious(0) probably_damaging(0.999) TCGA-55-6985-01 1 216420207 216420207 G T USH2A Silent p.L843L 0.20 TCGA-55-6985-01 1 220232313 220232313 C A BPNT1 Missense_Mutation p.G267V 0.07 deleterious(0) probably_damaging(1) TCGA-55-6985-01 1 220986690 220986690 G T MARC1 Missense_Mutation p.G315V 0.29 deleterious(0) probably_damaging(0.996) TCGA-55-6985-01 1 227300084 227300084 T C CDC42BPA Missense_Mutation p.K644E 0.21 deleterious(0) possibly_damaging(0.894) TCGA-55-6985-01 1 228431091 228431091 A G OBSCN Missense_Mutation p.K1138R 0.14 benign(0.28) TCGA-55-6985-01 1 23111389 23111389 C T EPHB2 Silent p.L211L 0.17 TCGA-55-6985-01 1 236201536 236201536 C A NID1 Missense_Mutation p.D385Y 0.17 tolerated(0.12) benign(0.001) TCGA-55-6985-01 1 236924451 236924451 T C ACTN2 Missense_Mutation p.F835S 0.17 deleterious(0) probably_damaging(1) TCGA-55-6985-01 1 237777909 237777909 C A RYR2 Silent p.T1827T 0.15 TCGA-55-6985-01 1 237995900 237995900 C A RYR2 Missense_Mutation p.P4953T 0.17 possibly_damaging(0.908) TCGA-55-6985-01 1 241675385 241675385 C - FH Frame_Shift_Del p.G146Efs*6 0.08 TCGA-55-6985-01 1 247655350 247655350 G C OR2W5 RNA 0.13 TCGA-55-6985-01 1 248202461 248202461 G T OR2L2 Missense_Mutation p.G298W 0.15 deleterious(0) probably_damaging(0.952) TCGA-55-6985-01 1 248458764 248458764 G T OR2T12 Missense_Mutation p.S39R 0.18 deleterious(0) benign(0.025) TCGA-55-6985-01 1 38230655 38230655 C T EPHA10 Nonsense_Mutation p.W28* 0.26 TCGA-55-6985-01 1 38352595 38352595 C A INPP5B Missense_Mutation p.A366S 0.15 tolerated(0.1) possibly_damaging(0.716) TCGA-55-6985-01 1 40207081 40207081 G T PPIE Missense_Mutation p.E58D 0.17 deleterious(0.01) benign(0.422) TCGA-55-6985-01 1 54360012 54360012 C A DIO1 Silent p.A43A 0.22 TCGA-55-6985-01 1 62916107 62916107 A T USP1 Missense_Mutation p.S605C 0.20 deleterious(0.04) benign(0.078) TCGA-55-6985-01 1 67861914 67861914 C A IL12RB2 3'UTR 0.16 TCGA-55-6985-01 1 75065539 75065539 T G C1orf173 Missense_Mutation p.Q522H 0.14 deleterious(0) probably_damaging(0.969) TCGA-55-6985-01 1 78180383 78180383 T C USP33 Missense_Mutation p.I742V 0.31 tolerated(0.47) benign(0.004) TCGA-55-6985-01 1 86919061 86919061 A T CLCA2 Missense_Mutation p.Q722L 0.13 tolerated(0.51) probably_damaging(0.962) TCGA-55-6985-01 1 9034716 9034716 C T CA6 3'Flank 0.17 TCGA-55-6985-01 1 92789427 92789427 G A RPAP2 Missense_Mutation p.S317N 0.23 tolerated(1) benign(0) TCGA-55-6985-01 1 97243402 97243402 A T PTBP2 Missense_Mutation p.K203M 0.11 deleterious(0) possibly_damaging(0.809) TCGA-55-6985-01 20 10036234 10036234 G A ANKEF1 Missense_Mutation p.D753N 0.25 deleterious(0.01) benign(0.265) TCGA-55-6985-01 20 17434598 17434598 G T PCSK2 Missense_Mutation p.G366V 0.33 deleterious(0.01) benign(0.257) TCGA-55-6985-01 20 20036686 20036686 G T CRNKL1 5'UTR 0.12 TCGA-55-6985-01 20 2442427 2442427 G A SNRPB Missense_Mutation p.P233L 0.07 deleterious_low_confidence(0.01) unknown(0) TCGA-55-6985-01 20 29891135 29891136 - T DEFB116 Frame_Shift_Ins p.N63Kfs*2 0.13 TCGA-55-6985-01 20 30381818 30381818 G T TPX2 Missense_Mutation p.Q559H 0.19 deleterious(0.01) possibly_damaging(0.878) TCGA-55-6985-01 20 3682161 3682161 C A SIGLEC1 Silent p.L452L 0.22 TCGA-55-6985-01 20 37357131 37357131 T C SLC32A1 Missense_Mutation p.F476S 0.12 deleterious(0) probably_damaging(0.998) TCGA-55-6985-01 20 43753106 43753106 T C WFDC12 5'UTR 0.25 TCGA-55-6985-01 20 50713933 50713933 G A ZFP64 Missense_Mutation p.R122C 0.20 deleterious(0) probably_damaging(0.998) TCGA-55-6985-01 20 51871008 51871008 A T TSHZ2 Silent p.T337T 0.16 TCGA-55-6985-01 20 51872426 51872426 C A TSHZ2 Missense_Mutation p.P810Q 0.09 tolerated(0.06) possibly_damaging(0.839) TCGA-55-6985-01 20 55111388 55111388 T A FAM209B Missense_Mutation p.M137K 0.19 deleterious(0) benign(0.031) TCGA-55-6985-01 20 55111389 55111389 G T FAM209B Missense_Mutation p.M137I 0.19 deleterious(0.05) benign(0.004) TCGA-55-6985-01 20 56140750 56140750 A T PCK1 Nonsense_Mutation p.K587* 0.26 TCGA-55-6985-01 20 58587794 58587794 G A CDH26 3'UTR 0.11 TCGA-55-6985-01 20 61990903 61990903 G T CHRNA4 Missense_Mutation p.D75E 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-55-6985-01 21 19698822 19698822 G T TMPRSS15 Silent p.L616L 0.28 TCGA-55-6985-01 21 40823995 40823995 G - SH3BGR Frame_Shift_Del p.G56Efs*22 0.24 TCGA-55-6985-01 21 42780212 42780212 G A MX2 3'UTR 0.22 TCGA-55-6985-01 21 45707006 45707006 C T AIRE Silent p.T151T 0.24 TCGA-55-6985-01 21 45821588 45821588 C A TRPM2 Silent p.G782G 0.28 TCGA-55-6985-01 21 46101879 46101879 C A KRTAP12-1 Missense_Mutation p.V54L 0.27 tolerated(0.18) benign(0.299) TCGA-55-6985-01 21 46311723 46311723 C T ITGB2 Splice_Site p.X471_splice 0.21 TCGA-55-6985-01 21 47832852 47832852 G - PCNT Frame_Shift_Del p.E2033Sfs*5 0.09 TCGA-55-6985-01 22 18640461 18640461 A G USP18 Missense_Mutation p.I11V 0.14 deleterious_low_confidence(0.03) benign(0.004) TCGA-55-6985-01 22 19175104 19175104 C T CLTCL1 Missense_Mutation p.S1524N 0.11 deleterious(0) probably_damaging(0.957) TCGA-55-6985-01 22 20104030 20104030 T C TRMT2A Missense_Mutation p.K44E 0.15 tolerated(0.97) benign(0) TCGA-55-6985-01 22 31022538 31022538 G A TCN2 3'UTR 0.12 TCGA-55-6985-01 22 31600613 31600613 G A RNF185 3'UTR 0.10 TCGA-55-6985-01 22 38150967 38150967 T C TRIOBP Silent p.Y1821Y 0.14 TCGA-55-6985-01 22 45132666 45132666 C T PRR5 Missense_Mutation p.R259C 0.11 tolerated(0.09) possibly_damaging(0.891) TCGA-55-6985-01 22 45132667 45132667 G T PRR5 Missense_Mutation p.R259L 0.11 tolerated(0.12) possibly_damaging(0.599) TCGA-55-6985-01 2 100210181 100210181 C T AFF3 Missense_Mutation p.E673K 0.12 deleterious(0) possibly_damaging(0.59) TCGA-55-6985-01 2 112588917 112588917 C A ANAPC1 Missense_Mutation p.M857I 0.08 tolerated(0.39) benign(0.001) TCGA-55-6985-01 2 130832833 130832833 G T POTEF Missense_Mutation p.P738T 0.13 deleterious_low_confidence(0) possibly_damaging(0.811) TCGA-55-6985-01 2 135779284 135779284 C A MAP3K19 Splice_Site p.X46_splice 0.28 TCGA-55-6985-01 2 140995780 140995780 C A LRP1B Missense_Mutation p.D4501Y 0.14 possibly_damaging(0.861) TCGA-55-6985-01 2 141625316 141625316 A T LRP1B Silent p.A1474A 0.09 TCGA-55-6985-01 2 141751612 141751612 C A LRP1B Missense_Mutation p.G866C 0.14 probably_damaging(0.998) TCGA-55-6985-01 2 145158817 145158817 T A ZEB2 Nonsense_Mutation p.K289* 0.19 TCGA-55-6985-01 2 149864578 149864578 G A KIF5C Silent p.K849K 0.09 TCGA-55-6985-01 2 162735744 162735744 G T SLC4A10 Missense_Mutation p.R351M 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-6985-01 2 166892600 166892600 C T SCN1A Silent p.T1129T 0.25 TCGA-55-6985-01 2 172844191 172844191 G T HAT1 Missense_Mutation p.R336L 0.17 deleterious(0) possibly_damaging(0.604) TCGA-55-6985-01 2 174820498 174820498 C A SP3 Missense_Mutation p.G248C 0.13 deleterious(0) probably_damaging(0.997) TCGA-55-6985-01 2 179464146 179464146 T G TTN Missense_Mutation p.I18792L 0.24 TCGA-55-6985-01 2 179635365 179635365 C T TTN Silent p.V2718V 0.11 TCGA-55-6985-01 2 186680137 186680137 T A FSIP2 Missense_Mutation p.F6878I 0.11 benign(0.13) TCGA-55-6985-01 2 189859478 189859478 G T COL3A1 Missense_Mutation p.G459V 0.13 unknown(0) TCGA-55-6985-01 2 198643703 198643703 T C BOLL Missense_Mutation p.K85E 0.17 deleterious(0.02) possibly_damaging(0.86) TCGA-55-6985-01 2 198949235 198949235 G A PLCL1 Missense_Mutation p.A332T 0.10 tolerated(0.55) benign(0.023) TCGA-55-6985-01 2 202446879 202446879 T C ALS2CR11 Missense_Mutation p.N193S 0.09 tolerated(0.43) benign(0.034) TCGA-55-6985-01 2 207619827 207619827 G A MDH1B Silent p.A272A 0.24 TCGA-55-6985-01 2 210559692 210559692 A G MAP2 Missense_Mutation p.K933R 0.12 tolerated_low_confidence(0.11) possibly_damaging(0.723) TCGA-55-6985-01 2 212530125 212530125 C T ERBB4 Silent p.Q598Q 0.22 TCGA-55-6985-01 2 215901724 215901724 T A ABCA12 Missense_Mutation p.Q313L 0.22 tolerated(0.18) benign(0.001) TCGA-55-6985-01 2 223574461 223574461 G T MOGAT1 Missense_Mutation p.R287L 0.16 deleterious(0.01) possibly_damaging(0.495) TCGA-55-6985-01 2 234622111 234622111 G T UGT1A5 Silent p.A158A 0.24 TCGA-55-6985-01 2 240982120 240982120 G T PRR21 Missense_Mutation p.P94T 0.38 tolerated_low_confidence(0.13) unknown(0) TCGA-55-6985-01 2 24888641 24888641 A G NCOA1 Missense_Mutation p.Q38R 0.16 deleterious(0.03) possibly_damaging(0.791) TCGA-55-6985-01 2 26802307 26802307 G T C2orf70 3'UTR 0.24 TCGA-55-6985-01 2 37036038 37036038 A T VIT Nonsense_Mutation p.K605* 0.16 TCGA-55-6985-01 2 44100965 44100965 C A ABCG8 Silent p.L417L 0.09 TCGA-55-6985-01 2 54147481 54147481 C T PSME4 Missense_Mutation p.G757S 0.14 deleterious(0.01) probably_damaging(0.978) TCGA-55-6985-01 2 68882079 68882079 T A PROKR1 Missense_Mutation p.L185M 0.17 tolerated(0.26) possibly_damaging(0.493) TCGA-55-6985-01 2 71780291 71780291 A T DYSF Missense_Mutation p.T653S 0.17 deleterious(0) possibly_damaging(0.773) TCGA-55-6985-01 2 79363172 79363172 G A REG1P RNA 0.29 TCGA-55-6985-01 2 80801338 80801338 G T CTNNA2 Missense_Mutation p.A598S 0.26 tolerated(1) benign(0.001) TCGA-55-6985-01 2 95537426 95537426 C T TEKT4 Silent p.F34F 0.15 TCGA-55-6985-01 2 98732176 98732176 G C VWA3B Missense_Mutation p.Q86H 0.11 deleterious(0) possibly_damaging(0.897) TCGA-55-6985-01 3 101504426 101504426 A G NXPE3 5'UTR 0.26 TCGA-55-6985-01 3 121207919 121207919 T A POLQ Missense_Mutation p.N1287Y 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.794) TCGA-55-6985-01 3 130174340 130174340 G T COL6A5 Missense_Mutation p.G2207V 0.15 deleterious_low_confidence(0.02) benign(0.031) TCGA-55-6985-01 3 132294735 132294735 G T ACAD11 Missense_Mutation p.L628I 0.11 deleterious(0) probably_damaging(1) TCGA-55-6985-01 3 132440852 132440852 C T NPHP3 Silent p.E116E 0.20 TCGA-55-6985-01 3 13916538 13916538 C A WNT7A Missense_Mutation p.M68I 0.25 deleterious(0.02) benign(0.026) TCGA-55-6985-01 3 14564574 14564574 G T GRIP2 RNA 0.31 TCGA-55-6985-01 3 147120558 147120558 C A ZIC4 Missense_Mutation p.M59I 0.32 tolerated_low_confidence(0.35) benign(0.003) TCGA-55-6985-01 3 148558715 148558715 A T CPB1 Missense_Mutation p.S143C 0.19 tolerated(0.05) possibly_damaging(0.871) TCGA-55-6985-01 3 150876565 150876565 C A MED12L Silent p.L272L 0.35 TCGA-55-6985-01 3 157816033 157816033 G T SHOX2 Missense_Mutation p.A284E 0.24 deleterious(0) probably_damaging(0.989) TCGA-55-6985-01 3 165547336 165547336 C T BCHE Missense_Mutation p.V496M 0.15 tolerated(1) benign(0.003) TCGA-55-6985-01 3 167506983 167506983 G T SERPINI1 Nonsense_Mutation p.E23* 0.24 TCGA-55-6985-01 3 169525463 169525463 T C LRRC34 Missense_Mutation p.N98D 0.41 deleterious(0) probably_damaging(0.992) TCGA-55-6985-01 3 189526191 189526191 C A TP63 Missense_Mutation p.P152H 0.23 tolerated(0.09) probably_damaging(0.999) TCGA-55-6985-01 3 190120208 190120208 C T CLDN16 Missense_Mutation p.S136F 0.13 deleterious(0) probably_damaging(0.995) TCGA-55-6985-01 3 196612328 196612328 G T SENP5 Missense_Mutation p.L92F 0.24 tolerated_low_confidence(0.72) benign(0.002) TCGA-55-6985-01 3 197483313 197483313 G C FYTTD1 Missense_Mutation p.L40F 0.19 deleterious(0) probably_damaging(1) TCGA-55-6985-01 3 33249344 33249344 G T SUSD5 Missense_Mutation p.P122Q 0.18 deleterious(0.01) probably_damaging(0.983) TCGA-55-6985-01 3 38760141 38760141 C G SCN10A Intron 0.23 TCGA-55-6985-01 3 57496642 57496642 C A DNAH12 Missense_Mutation p.W115L 0.20 deleterious(0) probably_damaging(0.909) TCGA-55-6985-01 3 88199086 88199086 G A C3orf38 5'UTR 0.38 TCGA-55-6985-01 3 9102045 9102045 T A SRGAP3 Splice_Site p.X225_splice 0.19 TCGA-55-6985-01 3 97595844 97595844 A G CRYBG3 5'UTR 0.28 TCGA-55-6985-01 3 98109761 98109761 C G OR5K3 Missense_Mutation p.N84K 0.18 deleterious(0.04) possibly_damaging(0.594) TCGA-55-6985-01 4 100237122 100237122 A T ADH1B Missense_Mutation p.L167Q 0.09 deleterious(0) probably_damaging(0.951) TCGA-55-6985-01 4 109769934 109769934 G T COL25A1 Missense_Mutation p.P472Q 0.21 deleterious(0.02) probably_damaging(0.954) TCGA-55-6985-01 4 113970941 113970941 T A ANK2 Missense_Mutation p.S19R 0.15 benign(0.093) TCGA-55-6985-01 4 114254230 114254230 C A ANK2 Missense_Mutation p.P1082H 0.29 probably_damaging(1) TCGA-55-6985-01 4 125591053 125591053 T C ANKRD50 Missense_Mutation p.K1127E 0.07 tolerated(0.64) benign(0.035) TCGA-55-6985-01 4 126337697 126337697 G T FAT4 Missense_Mutation p.S2313I 0.11 possibly_damaging(0.812) TCGA-55-6985-01 4 13601510 13601510 C A BOD1L1 Missense_Mutation p.M2338I 0.25 benign(0.001) TCGA-55-6985-01 4 138442469 138442469 G A PCDH18 Missense_Mutation p.P1041L 0.11 tolerated(0.68) benign(0) TCGA-55-6985-01 4 155505732 155505732 G T FGA Missense_Mutation p.H715Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-6985-01 4 166405732 166405732 G T CPE Missense_Mutation p.G317C 0.15 deleterious(0) probably_damaging(0.951) TCGA-55-6985-01 4 170043254 170043255 CT - SH3RF1 Frame_Shift_Del p.S448Cfs*15 0.18 TCGA-55-6985-01 4 175898230 175898230 G T ADAM29 Missense_Mutation p.E518D 0.19 tolerated(0.21) benign(0.022) TCGA-55-6985-01 4 178243616 178243616 G T NEIL3 Missense_Mutation p.A54S 0.15 tolerated(0.07) benign(0.005) TCGA-55-6985-01 4 187179309 187179309 G T KLKB1 Missense_Mutation p.W620C 0.24 deleterious(0) probably_damaging(1) TCGA-55-6985-01 4 22749528 22749528 G C GBA3 Missense_Mutation p.G299A 0.16 deleterious(0.05) possibly_damaging(0.908) TCGA-55-6985-01 4 3444599 3444599 G A HGFAC Silent p.P86P 0.35 TCGA-55-6985-01 4 4199745 4199745 G T OTOP1 Silent p.P272P 0.19 TCGA-55-6985-01 4 47514733 47514733 C T ATP10D Missense_Mutation p.P59L 0.29 tolerated(0.63) benign(0.001) TCGA-55-6985-01 4 52943004 52943004 G C SPATA18 Missense_Mutation p.R273T 0.13 tolerated(0.07) benign(0.047) TCGA-55-6985-01 4 54319267 54319267 G T FIP1L1 Missense_Mutation p.R489L 0.27 deleterious(0) probably_damaging(0.985) TCGA-55-6985-01 4 55979605 55979605 G T KDR Missense_Mutation p.S281Y 0.17 tolerated(0.13) benign(0.014) TCGA-55-6985-01 4 62903549 62903549 C A LPHN3 Missense_Mutation p.P1163H 0.12 deleterious(0.01) probably_damaging(0.987) TCGA-55-6985-01 4 6865538 6865538 A G KIAA0232 Missense_Mutation p.I1143M 0.26 deleterious(0.02) benign(0.009) TCGA-55-6985-01 4 69795685 69795685 G C UGT2A3 Missense_Mutation p.A477G 0.30 deleterious(0.01) probably_damaging(0.967) TCGA-55-6985-01 4 72316219 72316219 T A SLC4A4 Silent p.I389I 0.21 TCGA-55-6985-01 4 74453587 74453587 G C RASSF6 Missense_Mutation p.P150A 0.24 tolerated(0.1) benign(0.012) TCGA-55-6985-01 4 76581018 76581018 C A G3BP2 Missense_Mutation p.R160I 0.19 tolerated(0.06) probably_damaging(0.998) TCGA-55-6985-01 4 79205600 79205600 G C FRAS1 Missense_Mutation p.D433H 0.25 possibly_damaging(0.671) TCGA-55-6985-01 4 79396752 79396752 G T FRAS1 Missense_Mutation p.A2615S 0.36 possibly_damaging(0.522) TCGA-55-6985-01 4 96091391 96091391 G T UNC5C Silent p.I848I 0.27 TCGA-55-6985-01 4 96761915 96761915 C A PDHA2 Missense_Mutation p.A205D 0.19 deleterious(0) possibly_damaging(0.782) TCGA-55-6985-01 5 102611912 102611912 G A C5orf30 Missense_Mutation p.A98T 0.20 tolerated_low_confidence(0.42) benign(0.001) TCGA-55-6985-01 5 110438058 110438058 C G WDR36 Missense_Mutation p.T242R 0.11 deleterious(0.01) possibly_damaging(0.695) TCGA-55-6985-01 5 11082891 11082891 C T CTNND2 Missense_Mutation p.R902Q 0.06 tolerated(0.05) probably_damaging(0.944) TCGA-55-6985-01 5 113698508 113698508 G A KCNN2 Silent p.R12R 0.17 TCGA-55-6985-01 5 139661171 139661171 G A PFDN1 Intron 0.25 TCGA-55-6985-01 5 139743459 139743459 T G SLC4A9 Missense_Mutation p.L433R 0.15 deleterious(0) probably_damaging(0.985) TCGA-55-6985-01 5 140166634 140166634 G C PCDHA1 Missense_Mutation p.E253D 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.787) TCGA-55-6985-01 5 140182910 140182910 C A PCDHA3 Missense_Mutation p.L710M 0.08 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-55-6985-01 5 140186808 140186808 G T PCDHA4 Silent p.R12R 0.15 TCGA-55-6985-01 5 140202993 140202993 G A PCDHA5 Missense_Mutation p.G545S 0.13 tolerated_low_confidence(0.17) benign(0.13) TCGA-55-6985-01 5 140230536 140230536 T G PCDHA9 Intron 0.14 TCGA-55-6985-01 5 140723874 140723874 C A PCDHGA3 Silent p.R92R 0.16 TCGA-55-6985-01 5 140763824 140763824 C T PCDHGA7 Missense_Mutation p.P453L 0.13 tolerated_low_confidence(0.2) benign(0.003) TCGA-55-6985-01 5 150901610 150901610 G T FAT2 Missense_Mutation p.T3515K 0.33 possibly_damaging(0.905) TCGA-55-6985-01 5 151239524 151239524 G T GLRA1 Missense_Mutation p.R100S 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-6985-01 5 170341170 170341170 G T RANBP17 Splice_Site p.X254_splice 0.08 TCGA-55-6985-01 5 172745171 172745171 C T STC2 Silent p.Q196Q 0.44 TCGA-55-6985-01 5 175110068 175110068 C A HRH2 5'UTR 0.19 TCGA-55-6985-01 5 176017662 176017662 C A CDHR2 Silent p.T1171T 0.08 TCGA-55-6985-01 5 176017663 176017663 A T CDHR2 Missense_Mutation p.M1172L 0.08 tolerated(1) benign(0) TCGA-55-6985-01 5 180057088 180057088 C T FLT4 Nonsense_Mutation p.W177* 0.14 TCGA-55-6985-01 5 23527018 23527018 C T PRDM9 Silent p.P607P 0.07 TCGA-55-6985-01 5 24509888 24509888 A T CDH10 Missense_Mutation p.V348D 0.10 deleterious(0) probably_damaging(0.962) TCGA-55-6985-01 5 26881513 26881513 C A CDH9 Missense_Mutation p.R701M 0.45 deleterious(0.02) probably_damaging(0.961) TCGA-55-6985-01 5 31302382 31302382 G T CDH6 Nonsense_Mutation p.E326* 0.09 TCGA-55-6985-01 5 33614446 33614446 A G ADAMTS12 Silent p.Y808Y 0.08 TCGA-55-6985-01 5 35727880 35727880 G T SPEF2 Missense_Mutation p.K1006N 0.23 deleterious(0.02) possibly_damaging(0.879) TCGA-55-6985-01 5 35876479 35876479 G T IL7R Missense_Mutation p.G424V 0.17 deleterious(0.01) probably_damaging(0.949) TCGA-55-6985-01 5 36052038 36052038 G A UGT3A2 Missense_Mutation p.P82L 0.34 deleterious(0) probably_damaging(0.938) TCGA-55-6985-01 5 36111293 36111293 C T LMBRD2 Missense_Mutation p.D570N 0.17 deleterious(0) possibly_damaging(0.907) TCGA-55-6985-01 5 7826866 7826866 T A ADCY2 Missense_Mutation p.L1053H 0.11 deleterious(0) probably_damaging(0.979) TCGA-55-6985-01 5 82836883 82836884 - C VCAN Frame_Shift_Ins p.T2689Hfs*10 0.18 TCGA-55-6985-01 6 108066261 108066261 G T SCML4 Missense_Mutation p.L192M 0.19 deleterious(0.04) possibly_damaging(0.868) TCGA-55-6985-01 6 117864336 117864336 G T DCBLD1 Silent p.L469L 0.22 TCGA-55-6985-01 6 127611329 127611329 G T ECHDC1 Silent p.I203I 0.30 TCGA-55-6985-01 6 139363914 139363914 C T ABRACL Silent p.A40A 0.23 TCGA-55-6985-01 6 169648888 169648888 A G THBS2 Missense_Mutation p.M78T 0.43 deleterious(0) benign(0.044) TCGA-55-6985-01 6 28327735 28327735 G T ZKSCAN3 Missense_Mutation p.L124F 0.17 deleterious(0.03) benign(0.248) TCGA-55-6985-01 6 29408311 29408311 C A OR10C1 Silent p.I173I 0.36 TCGA-55-6985-01 6 29429607 29429607 C A OR2H1 Missense_Mutation p.L21M 0.09 deleterious(0.01) probably_damaging(0.915) TCGA-55-6985-01 6 33239521 33239521 C T VPS52 5'UTR 0.33 TCGA-55-6985-01 6 33290735 33290735 A G DAXX 5'UTR 0.39 TCGA-55-6985-01 6 34497300 34497300 G T PACSIN1 Missense_Mutation p.V195L 0.33 tolerated(0.12) benign(0.001) TCGA-55-6985-01 6 36839662 36839662 G T PPIL1 Intron 0.19 TCGA-55-6985-01 6 39034045 39034045 C A GLP1R Missense_Mutation p.L159M 0.16 deleterious(0) probably_damaging(0.958) TCGA-55-6985-01 6 40400435 40400435 C T LRFN2 Missense_Mutation p.A140T 0.37 tolerated(0.08) benign(0.322) TCGA-55-6985-01 6 40400436 40400436 G T LRFN2 Silent p.I139I 0.33 TCGA-55-6985-01 6 47649585 47649585 C A GPR111 Silent p.T430T 0.11 TCGA-55-6985-01 6 47681803 47681803 G T GPR115 Missense_Mutation p.Q274H 0.40 tolerated(0.52) benign(0.252) TCGA-55-6985-01 6 49754005 49754005 C T PGK2 Missense_Mutation p.G299E 0.34 tolerated(0.09) benign(0.212) TCGA-55-6985-01 6 70900066 70900066 G A COL19A1 Silent p.E1025E 0.22 TCGA-55-6985-01 6 80626302 80626302 C A ELOVL4 3'UTR 0.16 TCGA-55-6985-01 7 100348468 100348468 C A ZAN Nonsense_Mutation p.Y490* 0.17 TCGA-55-6985-01 7 107423710 107423710 C A SLC26A3 Silent p.V353V 0.38 TCGA-55-6985-01 7 107816895 107816895 G T NRCAM Missense_Mutation p.A1044E 0.19 deleterious(0.01) benign(0.429) TCGA-55-6985-01 7 110764717 110764717 T C LRRN3 Missense_Mutation p.M630T 0.22 tolerated(0.09) benign(0.008) TCGA-55-6985-01 7 112112292 112112292 G T IFRD1 Nonsense_Mutation p.E354* 0.29 TCGA-55-6985-01 7 112579683 112579683 C G C7orf60 Missense_Mutation p.K41N 0.09 deleterious(0) possibly_damaging(0.59) TCGA-55-6985-01 7 115581927 115581927 G T TFEC Intron 0.25 TCGA-55-6985-01 7 123594058 123594058 T C SPAM1 Missense_Mutation p.I145T 0.28 deleterious(0) probably_damaging(0.998) TCGA-55-6985-01 7 127251136 127251136 T A PAX4 Silent p.L338L 0.17 TCGA-55-6985-01 7 128454800 128454800 C G CCDC136 Missense_Mutation p.Q958E 0.10 deleterious(0) probably_damaging(0.998) TCGA-55-6985-01 7 129909638 129909638 G T CPA2 Missense_Mutation p.V95L 0.34 tolerated(1) benign(0.007) TCGA-55-6985-01 7 134881057 134881057 T A WDR91 Silent p.P361P 0.32 TCGA-55-6985-01 7 141418964 141418964 C A WEE2 Silent p.V226V 0.23 TCGA-55-6985-01 7 142000796 142000796 G T TRBV2 5'UTR 0.14 TCGA-55-6985-01 7 142008760 142008760 C A TRBV3-1 Missense_Mutation p.T78K 0.12 deleterious(0) probably_damaging(0.972) TCGA-55-6985-01 7 142423226 142423226 A T TRBV27 Missense_Mutation p.Q4L 0.35 TCGA-55-6985-01 7 143806830 143806830 C G OR2A2 Missense_Mutation p.S52C 0.26 tolerated(0.18) benign(0.002) TCGA-55-6985-01 7 143826637 143826637 T A OR2A14 Silent p.A144A 0.29 TCGA-55-6985-01 7 150553579 150553579 C G AOC1 Silent p.A7A 0.12 TCGA-55-6985-01 7 157926730 157926730 G C PTPRN2 Missense_Mutation p.L399V 0.16 tolerated(0.19) benign(0.162) TCGA-55-6985-01 7 27203149 27203149 G T HOXA9 3'UTR 0.23 TCGA-55-6985-01 7 36336765 36336765 G T EEPD1 Missense_Mutation p.W493C 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-6985-01 7 42065849 42065849 A C GLI3 Silent p.P397P 0.18 TCGA-55-6985-01 7 44737016 44737016 G C OGDH Missense_Mutation p.C700S 0.24 tolerated(0.14) possibly_damaging(0.853) TCGA-55-6985-01 7 45719353 45719353 G T ADCY1 Silent p.L648L 0.36 TCGA-55-6985-01 7 45719354 45719354 G T ADCY1 Missense_Mutation p.V649L 0.35 tolerated(0.2) benign(0.02) TCGA-55-6985-01 7 53104079 53104079 A T POM121L12 Missense_Mutation p.S239C 0.24 deleterious(0) probably_damaging(0.938) TCGA-55-6985-01 7 5567995 5567995 T C ACTB Missense_Mutation p.Y240C 0.22 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-55-6985-01 7 57188132 57188132 A C ZNF479 Missense_Mutation p.C330W 0.27 deleterious(0) probably_damaging(1) TCGA-55-6985-01 7 57528738 57528738 G T ZNF716 Missense_Mutation p.G191C 0.18 deleterious(0) probably_damaging(0.958) TCGA-55-6985-01 7 62758685 62758685 C A ZNF733P RNA 0.31 TCGA-55-6985-01 7 64438556 64438556 T A ZNF117 Missense_Mutation p.I465L 0.16 tolerated(0.27) benign(0.12) TCGA-55-6985-01 7 70885970 70885970 G T WBSCR17 Missense_Mutation p.D281Y 0.30 deleterious(0.01) probably_damaging(0.966) TCGA-55-6985-01 7 8099853 8099853 A G GLCCI1 Missense_Mutation p.N314S 0.22 tolerated(0.15) benign(0.019) TCGA-55-6985-01 7 82581839 82581839 T G PCLO Silent p.T2810T 0.10 TCGA-55-6985-01 7 84702316 84702316 G C SEMA3D Missense_Mutation p.P153A 0.17 deleterious(0) possibly_damaging(0.743) TCGA-55-6985-01 7 86990876 86990876 G T CROT Missense_Mutation p.Q165H 0.11 deleterious(0.03) benign(0.078) TCGA-55-6985-01 7 883007 883007 G T SUN1 Missense_Mutation p.G170W 0.24 deleterious(0) probably_damaging(1) TCGA-55-6985-01 7 88966181 88966181 G T ZNF804B Missense_Mutation p.L1295F 0.09 tolerated(0.07) benign(0.263) TCGA-55-6985-01 7 93065450 93065450 C A CALCR Silent p.R355R 0.28 TCGA-55-6985-01 7 98256507 98256507 G T NPTX2 Missense_Mutation p.G307C 0.34 deleterious(0) probably_damaging(0.999) TCGA-55-6985-01 7 98256612 98256612 C A NPTX2 Missense_Mutation p.H342N 0.14 deleterious(0) probably_damaging(1) TCGA-55-6985-01 7 99757655 99757655 G T GAL3ST4 Missense_Mutation p.R453S 0.37 tolerated(0.06) probably_damaging(0.979) TCGA-55-6985-01 7 99997503 99997503 G A PILRA Silent p.E295E 0.20 TCGA-55-6985-01 8 10756321 10756321 C A XKR6 Missense_Mutation p.G356V 0.12 deleterious(0) probably_damaging(1) TCGA-55-6985-01 8 110302082 110302082 C A NUDCD1 Nonsense_Mutation p.G241* 0.08 TCGA-55-6985-01 8 110447520 110447520 G T PKHD1L1 Nonsense_Mutation p.E1148* 0.30 TCGA-55-6985-01 8 114388966 114388966 C A CSMD3 Intron 0.08 TCGA-55-6985-01 8 13072267 13072267 C G DLC1 Intron 0.29 TCGA-55-6985-01 8 142476535 142476535 G T MROH5 3'UTR 0.37 TCGA-55-6985-01 8 143993975 143993975 C A CYP11B2 Nonsense_Mutation p.E457* 0.16 TCGA-55-6985-01 8 144993686 144993686 C G PLEC Missense_Mutation p.G3572R 0.16 probably_damaging(1) TCGA-55-6985-01 8 2056576 2056576 G T MYOM2 Splice_Site p.X1000_splice 0.09 TCGA-55-6985-01 8 24201028 24201028 C T ADAM28 Missense_Mutation p.H641Y 0.24 deleterious(0) probably_damaging(0.952) TCGA-55-6985-01 8 2807764 2807764 G T CSMD1 Missense_Mutation p.L3435I 0.11 benign(0.046) TCGA-55-6985-01 8 2857539 2857539 G C CSMD1 Missense_Mutation p.T2715S 0.13 probably_damaging(0.998) TCGA-55-6985-01 8 42612118 42612118 G A CHRNA6 Silent p.R109R 0.24 TCGA-55-6985-01 8 51449274 51449274 G T SNTG1 Missense_Mutation p.G196C 0.09 tolerated(0.06) possibly_damaging(0.474) TCGA-55-6985-01 8 52320835 52320835 G T PXDNL Missense_Mutation p.L1117I 0.11 tolerated(0.13) probably_damaging(0.943) TCGA-55-6985-01 8 52370149 52370149 C A PXDNL Missense_Mutation p.E297D 0.07 tolerated(0.24) benign(0.364) TCGA-55-6985-01 8 55540348 55540348 C G RP1 Silent p.V1302V 0.12 TCGA-55-6985-01 8 92999186 92999186 G T RUNX1T1 Missense_Mutation p.R347S 0.32 tolerated(0.23) possibly_damaging(0.701) TCGA-55-6985-01 8 93026891 93026891 C A RUNX1T1 Missense_Mutation p.R139S 0.24 deleterious(0) possibly_damaging(0.467) TCGA-55-6985-01 9 104433161 104433161 A G GRIN3A Silent p.S511S 0.32 TCGA-55-6985-01 9 113169798 113169798 G T SVEP1 Missense_Mutation p.N2694K 0.06 benign(0.297) TCGA-55-6985-01 9 123628067 123628067 T A PHF19 Missense_Mutation p.Q274L 0.33 tolerated(0.9) benign(0.006) TCGA-55-6985-01 9 129453247 129453247 C T LMX1B Silent p.G153G 0.24 TCGA-55-6985-01 9 130540979 130540979 T C SH2D3C 5'UTR 0.27 TCGA-55-6985-01 9 13183472 13183472 C G MPDZ Missense_Mutation p.S865T 0.24 tolerated(0.1) probably_damaging(0.94) TCGA-55-6985-01 9 134526329 134526329 C A RAPGEF1 Missense_Mutation p.Q24H 0.31 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-55-6985-01 9 136501746 136501746 G T DBH Missense_Mutation p.V85F 0.23 tolerated(0.41) possibly_damaging(0.515) TCGA-55-6985-01 9 32634807 32634807 T C TAF1L Silent p.K257K 0.25 TCGA-55-6985-01 9 37888039 37888039 C A SLC25A51 Missense_Mutation p.G170V 0.09 tolerated(0.16) benign(0.039) TCGA-55-6985-01 9 73225584 73225584 G T TRPM3 Missense_Mutation p.L858I 0.17 tolerated(1) benign(0.005) TCGA-55-6985-01 9 79321360 79321360 C T PRUNE2 Missense_Mutation p.A1944T 0.10 tolerated(0.29) benign(0.012) TCGA-55-6985-01 9 8517929 8517929 A C PTPRD Missense_Mutation p.Y488D 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-6985-01 9 86530457 86530457 C A KIF27 Missense_Mutation p.C17F 0.24 tolerated(0.15) benign(0.276) TCGA-55-6985-01 9 87285783 87285783 C A NTRK2 Silent p.A40A 0.31 TCGA-55-6985-01 9 88236124 88236124 T C AGTPBP1 Missense_Mutation p.N658D 0.33 tolerated(0.53) benign(0.015) TCGA-55-6985-01 9 95178974 95178974 G T OMD Missense_Mutation p.H289Q 0.21 deleterious(0) probably_damaging(0.993) TCGA-55-6985-01 9 97522328 97522328 G A C9orf3 Missense_Mutation p.R88K 0.30 tolerated_low_confidence(0.37) benign(0.001) TCGA-55-6985-01 9 990229 990229 G C DMRT3 Missense_Mutation p.E215Q 0.24 deleterious(0.02) benign(0.151) TCGA-55-6985-01 X 101572440 101572440 G A NXF2 Missense_Mutation p.S113N 0.22 tolerated(0.41) benign(0) TCGA-55-6985-01 X 107170202 107170202 G T MID2 Missense_Mutation p.G703C 0.30 deleterious(0) probably_damaging(1) TCGA-55-6985-01 X 107417713 107417713 C A COL4A6 Missense_Mutation p.G1033V 0.35 probably_damaging(1) TCGA-55-6985-01 X 120182771 120182771 A G GLUD2 Silent p.P411P 0.15 TCGA-55-6985-01 X 122778518 122778518 C A THOC2 Silent p.L523L 0.19 TCGA-55-6985-01 X 128722155 128722155 G - OCRL Splice_Site p.X753_splice 0.26 TCGA-55-6985-01 X 129149178 129149178 G - BCORL1 Frame_Shift_Del p.A811Qfs*42 0.23 TCGA-55-6985-01 X 136112879 136112879 C T GPR101 Missense_Mutation p.E319K 0.17 deleterious_low_confidence(0.02) benign(0.072) TCGA-55-6985-01 X 14548215 14548215 G T GLRA2 Missense_Mutation p.L12F 0.17 deleterious_low_confidence(0.01) benign(0.003) TCGA-55-6985-01 X 150869328 150869328 C A PRRG3 Missense_Mutation p.S173R 0.34 tolerated(0.28) benign(0.319) TCGA-55-6985-01 X 151821180 151821180 C A GABRQ Silent p.A445A 0.31 TCGA-55-6985-01 X 15320871 15320871 G T ASB11 Silent p.A80A 0.15 TCGA-55-6985-01 X 153219910 153219910 G A HCFC1 Nonsense_Mutation p.Q1314* 0.18 TCGA-55-6985-01 X 15509385 15509385 G T PIR 5'UTR 0.18 TCGA-55-6985-01 X 155234100 155234100 C A IL9R Missense_Mutation p.P150H 0.16 deleterious(0) probably_damaging(0.998) TCGA-55-6985-01 X 15574377 15574377 A T BMX 3'UTR 0.21 TCGA-55-6985-01 X 16870189 16870189 G T RBBP7 Silent p.R384R 0.29 TCGA-55-6985-01 X 18194204 18194204 G T BEND2 Missense_Mutation p.A547E 0.24 deleterious(0) probably_damaging(0.951) TCGA-55-6985-01 X 18822024 18822024 G T PPEF1 Silent p.L360L 0.34 TCGA-55-6985-01 X 19387328 19387328 G C MAP3K15 Missense_Mutation p.A1137G 0.20 tolerated(0.2) benign(0.03) TCGA-55-6985-01 X 299548 299548 C A PPP2R3B Missense_Mutation p.D479Y 0.28 deleterious(0) probably_damaging(0.984) TCGA-55-6985-01 X 3228008 3228008 G C MXRA5 Missense_Mutation p.R2746G 0.31 deleterious(0) probably_damaging(0.996) TCGA-55-6985-01 X 34149660 34149660 G T FAM47A Missense_Mutation p.H246N 0.12 tolerated(0.07) possibly_damaging(0.888) TCGA-55-6985-01 X 39934249 39934249 T A BCOR Missense_Mutation p.E117V 0.14 deleterious(0) probably_damaging(0.997) TCGA-55-6985-01 X 49689821 49689821 G A CLCN5 5'UTR 0.16 TCGA-55-6985-01 X 69647065 69647065 G T GDPD2 Missense_Mutation p.V261F 0.15 deleterious(0) possibly_damaging(0.853) TCGA-55-6985-01 X 73044429 73044429 A T XIST RNA 0.21 TCGA-55-6986-01 10 118360598 118360598 G A PNLIPRP1 Silent p.P316P 0.30 TCGA-55-6986-01 10 94368781 94368781 C T KIF11 Missense_Mutation p.P131L 0.33 deleterious(0) probably_damaging(0.997) TCGA-55-6986-01 11 65116348 65116348 G A DPF2 Missense_Mutation p.D349N 0.19 deleterious(0.01) probably_damaging(1) TCGA-55-6986-01 11 65636001 65636001 A G EFEMP2 Missense_Mutation p.L276P 0.17 deleterious(0.04) possibly_damaging(0.905) TCGA-55-6986-01 14 74551056 74551056 G A ALDH6A1 Silent p.I14I 0.10 TCGA-55-6986-01 15 40628778 40628778 C T C15orf52 Missense_Mutation p.R339Q 0.11 deleterious(0.02) probably_damaging(1) TCGA-55-6986-01 17 15234676 15234676 G A TEKT3 Missense_Mutation p.S76F 0.06 tolerated(0.05) benign(0.057) TCGA-55-6986-01 17 71165803 71165803 C T SSTR2 Silent p.C115C 0.17 TCGA-55-6986-01 18 2891825 2891825 C T EMILIN2 Missense_Mutation p.A567V 0.10 tolerated(0.51) benign(0.08) TCGA-55-6986-01 19 43268115 43268115 C T PSG8 Missense_Mutation p.G128D 0.09 tolerated(0.5) benign(0.007) TCGA-55-6986-01 19 43699308 43699308 T C PSG4 Missense_Mutation p.N276S 0.09 deleterious(0.02) possibly_damaging(0.621) TCGA-55-6986-01 1 186302468 186302468 G T TPR Silent p.S1747S 0.09 TCGA-55-6986-01 1 28148801 28148801 C G STX12 Missense_Mutation p.I264M 0.20 deleterious(0.02) benign(0.308) TCGA-55-6986-01 20 33439958 33439958 C T GGT7 Silent p.L529L 0.14 TCGA-55-6986-01 20 33874757 33874757 G T FAM83C Missense_Mutation p.P609T 0.33 tolerated_low_confidence(0.05) benign(0.007) TCGA-55-6986-01 2 228762934 228762934 T C DAW1 Silent p.C159C 0.14 TCGA-55-6986-01 3 38307442 38307442 C T SLC22A13 Silent p.L31L 0.17 TCGA-55-6986-01 3 47155477 47155478 TT - SETD2 Frame_Shift_Del p.N1535Wfs*7 0.12 TCGA-55-6986-01 3 9036109 9036109 G A SRGAP3 Missense_Mutation p.R776C 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-55-6986-01 5 23527795 23527795 G A PRDM9 Silent p.G866G 0.16 TCGA-55-6986-01 5 82937403 82937403 C T HAPLN1 Missense_Mutation p.S326N 0.24 deleterious(0.01) probably_damaging(0.962) TCGA-55-6986-01 6 131919786 131919787 - G MED23 Frame_Shift_Ins p.H779Pfs*26 0.21 TCGA-55-6986-01 6 160575836 160575836 C T SLC22A1 Silent p.L464L 0.22 TCGA-55-6986-01 6 38998146 38998146 C A DNAH8 Missense_Mutation p.A4484D 0.08 probably_damaging(1) TCGA-55-6986-01 7 99359829 99359829 G A CYP3A4 Missense_Mutation p.T363M 0.14 deleterious(0) probably_damaging(0.997) TCGA-55-6986-01 8 42873659 42873659 A G HOOK3 3'UTR 0.15 TCGA-55-6986-01 9 19424785 19424785 C T ACER2 Missense_Mutation p.A104V 0.13 deleterious(0.01) probably_damaging(0.986) TCGA-55-6987-01 10 102987542 102987542 C G LBX1 Missense_Mutation p.D111H 0.11 deleterious(0.02) probably_damaging(0.997) TCGA-55-6987-01 10 114059319 114059319 C T TECTB Missense_Mutation p.R302W 0.14 deleterious(0) benign(0.386) TCGA-55-6987-01 10 119003520 119003520 G C SLC18A2 Missense_Mutation p.E54Q 0.11 tolerated(0.35) benign(0.035) TCGA-55-6987-01 10 120797844 120797844 C A EIF3A Missense_Mutation p.D1212Y 0.17 deleterious_low_confidence(0.02) unknown(0) TCGA-55-6987-01 10 70741308 70741308 G T DDX21 Missense_Mutation p.V685L 0.13 tolerated(0.16) benign(0.079) TCGA-55-6987-01 10 99144961 99144961 C A RRP12 Missense_Mutation p.W390C 0.19 deleterious(0) probably_damaging(0.999) TCGA-55-6987-01 11 124252802 124252802 A G OR8B2 Silent p.F146F 0.11 TCGA-55-6987-01 11 18194851 18194851 C A MRGPRX4 Missense_Mutation p.N16K 0.06 tolerated(0.07) benign(0.188) TCGA-55-6987-01 11 281221 281221 A T NLRP6 Missense_Mutation p.Q496L 0.09 deleterious(0.03) possibly_damaging(0.717) TCGA-55-6987-01 11 33108570 33108570 G A CSTF3 Nonsense_Mutation p.Q587* 0.06 TCGA-55-6987-01 11 36516548 36516548 T C TRAF6 Missense_Mutation p.N219S 0.07 tolerated(0.13) benign(0.006) TCGA-55-6987-01 11 47303198 47303198 C T MADD Missense_Mutation p.P455S 0.07 tolerated(0.18) benign(0.009) TCGA-55-6987-01 11 4824894 4824894 T G OR52R1 Missense_Mutation p.K239N 0.06 deleterious(0) probably_damaging(0.996) TCGA-55-6987-01 11 49176011 49176011 G C FOLH1 Missense_Mutation p.H553D 0.14 deleterious(0) probably_damaging(1) TCGA-55-6987-01 11 55322726 55322726 C A OR4C15 Missense_Mutation p.P315Q 0.07 deleterious_low_confidence(0.05) probably_damaging(0.962) TCGA-55-6987-01 11 55578976 55578976 T G OR5L1 Missense_Mutation p.F12V 0.05 deleterious(0) probably_damaging(0.999) TCGA-55-6987-01 11 55944365 55944365 C G OR5J2 Missense_Mutation p.T91R 0.06 tolerated(0.11) benign(0.03) TCGA-55-6987-01 11 56044014 56044014 C T OR5T1 Silent p.I300I 0.10 TCGA-55-6987-01 11 56057972 56057972 C A OR8H1 Missense_Mutation p.M189I 0.12 deleterious(0.02) benign(0.003) TCGA-55-6987-01 11 5717615 5717615 A C TRIM22 Missense_Mutation p.R51S 0.07 tolerated(0.06) benign(0.155) TCGA-55-6987-01 11 57235087 57235087 G A RTN4RL2 Missense_Mutation p.A13T 0.09 tolerated_low_confidence(0.08) possibly_damaging(0.499) TCGA-55-6987-01 11 59949102 59949102 C A MS4A6A Silent p.G61G 0.07 TCGA-55-6987-01 11 6048350 6048350 G A OR56A1 Silent p.S195S 0.09 TCGA-55-6987-01 11 66062081 66062081 G T TMEM151A Missense_Mutation p.V122L 0.18 deleterious(0.03) benign(0.009) TCGA-55-6987-01 12 111779599 111779599 G T CUX2 Missense_Mutation p.R1134L 0.21 deleterious(0.01) probably_damaging(0.983) TCGA-55-6987-01 12 11546003 11546003 G C PRB2 Missense_Mutation p.Q337E 0.09 deleterious(0.01) unknown(0) TCGA-55-6987-01 12 119617367 119617367 G A HSPB8 Missense_Mutation p.E84K 0.14 tolerated(0.84) benign(0.021) TCGA-55-6987-01 12 121018963 121018963 C G POP5 Missense_Mutation p.V40L 0.06 tolerated(0.43) benign(0.05) TCGA-55-6987-01 12 123087422 123087422 G A KNTC1 Silent p.S1624S 0.11 TCGA-55-6987-01 12 25299993 25299993 C A CASC1 Missense_Mutation p.V211F 0.10 deleterious(0) possibly_damaging(0.847) TCGA-55-6987-01 12 45410212 45410212 C A DBX2 Nonsense_Mutation p.E293* 0.11 TCGA-55-6987-01 12 4920191 4920191 C G KCNA6 Silent p.G328G 0.14 TCGA-55-6987-01 12 51451898 51451898 C T LETMD1 Silent p.S346S 0.16 TCGA-55-6987-01 12 6127849 6127849 C A VWF Missense_Mutation p.G1579W 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-6987-01 12 64041116 64041116 G T DPY19L2 Missense_Mutation p.F206L 0.19 tolerated(0.1) benign(0.02) TCGA-55-6987-01 12 7288024 7288024 G A CLSTN3 Missense_Mutation p.R162H 0.09 deleterious(0.03) benign(0.029) TCGA-55-6987-01 12 77417696 77417696 G A E2F7 3'UTR 0.19 TCGA-55-6987-01 12 78400786 78400786 C T NAV3 Nonsense_Mutation p.Q490* 0.09 TCGA-55-6987-01 13 25168424 25168424 G A RP11-556N21.1 RNA 0.23 TCGA-55-6987-01 14 102675732 102675732 C A WDR20 Missense_Mutation p.P440T 0.10 tolerated(0.17) benign(0.001) TCGA-55-6987-01 14 22280084 22280084 T C TRAV9-1 Silent p.S91S 0.15 TCGA-55-6987-01 14 22321084 22321084 G T TRAV8-3 Missense_Mutation p.G81V 0.22 deleterious(0) possibly_damaging(0.783) TCGA-55-6987-01 14 24774178 24774178 C T NOP9 Silent p.F596F 0.09 TCGA-55-6987-01 14 36304127 36304127 G T BRMS1L Nonsense_Mutation p.E147* 0.17 TCGA-55-6987-01 14 67671598 67671598 C T FAM71D Missense_Mutation p.P235L 0.09 deleterious_low_confidence(0.02) benign(0) TCGA-55-6987-01 14 75555296 75555296 G C NEK9 Missense_Mutation p.L831V 0.10 tolerated_low_confidence(0.68) benign(0.001) TCGA-55-6987-01 14 90770522 90770522 T C NRDE2 Missense_Mutation p.I254M 0.07 deleterious(0.01) probably_damaging(0.957) TCGA-55-6987-01 14 93760232 93760232 C G BTBD7 Silent p.L378L 0.07 TCGA-55-6987-01 14 94069648 94069648 G T UNC79 Missense_Mutation p.R1036I 0.11 deleterious(0) probably_damaging(0.998) TCGA-55-6987-01 15 31341653 31341653 C T TRPM1 Silent p.V516V 0.15 TCGA-55-6987-01 15 33905510 33905510 G C RYR3 Missense_Mutation p.G764A 0.09 probably_damaging(1) TCGA-55-6987-01 15 34648999 34648999 C T NUTM1 Silent p.N902N 0.09 TCGA-55-6987-01 15 51837821 51837821 G A DMXL2 Missense_Mutation p.H297Y 0.10 tolerated(0.19) benign(0.138) TCGA-55-6987-01 15 54306933 54306933 G C UNC13C Missense_Mutation p.Q611H 0.20 tolerated_low_confidence(0.23) benign(0.155) TCGA-55-6987-01 15 60297753 60297753 C T FOXB1 Silent p.A197A 0.16 TCGA-55-6987-01 15 65345416 65345416 C A SLC51B Missense_Mutation p.P101T 0.15 tolerated(0.13) benign(0.146) TCGA-55-6987-01 15 90611352 90611352 G T ZNF710 Missense_Mutation p.C328F 0.11 deleterious(0) probably_damaging(0.996) TCGA-55-6987-01 16 11214550 11214550 A C CLEC16A Missense_Mutation p.Y732S 0.36 tolerated(0.23) probably_damaging(0.968) TCGA-55-6987-01 16 15675108 15675108 G A C16orf45 Silent p.E113E 0.41 TCGA-55-6987-01 16 20497956 20497956 C T ACSM2A Nonsense_Mutation p.R564* 0.08 TCGA-55-6987-01 16 21658803 21658803 G T IGSF6 Silent p.G26G 0.18 TCGA-55-6987-01 16 25268403 25268403 C G ZKSCAN2 Missense_Mutation p.E16Q 0.06 deleterious(0.04) benign(0.147) TCGA-55-6987-01 16 75512953 75512953 G C CHST6 Silent p.L258L 0.10 TCGA-55-6987-01 16 84212974 84212974 C T TAF1C Missense_Mutation p.R728Q 0.14 tolerated(0.39) benign(0.016) TCGA-55-6987-01 16 89967051 89967051 G C TCF25 Silent p.R410R 0.09 TCGA-55-6987-01 17 11592889 11592889 T C DNAH9 Silent p.D1250D 0.18 TCGA-55-6987-01 17 11809074 11809074 G A DNAH9 Missense_Mutation p.M3899I 0.19 benign(0.004) TCGA-55-6987-01 17 27613571 27613571 T C NUFIP2 Missense_Mutation p.M481V 0.06 tolerated(1) benign(0) TCGA-55-6987-01 17 3101596 3101596 C A OR1A2 Missense_Mutation p.L262M 0.18 tolerated(0.16) possibly_damaging(0.777) TCGA-55-6987-01 17 38955812 38955812 C A KRT28 Missense_Mutation p.A112S 0.07 tolerated(0.09) benign(0.177) TCGA-55-6987-01 17 43311087 43311087 G C FMNL1 Missense_Mutation p.Q158H 0.07 tolerated(0.08) unknown(0) TCGA-55-6987-01 17 7214941 7214941 C G EIF5A Missense_Mutation p.I179M 0.06 deleterious(0.04) benign(0.311) TCGA-55-6987-01 17 78085790 78085790 G - GAA Frame_Shift_Del p.T551Pfs*27 0.15 TCGA-55-6987-01 17 79876037 79876037 C T SIRT7 5'UTR 0.19 TCGA-55-6987-01 18 28923617 28923617 G T DSG1 Intron 0.29 TCGA-55-6987-01 18 43523190 43523190 C A EPG5 Missense_Mutation p.G627V 0.12 deleterious(0) probably_damaging(0.998) TCGA-55-6987-01 18 72343953 72343953 G T ZNF407 Silent p.T326T 0.16 TCGA-55-6987-01 19 10610364 10610364 G A KEAP1 Missense_Mutation p.R116W 0.12 deleterious(0) probably_damaging(0.994) TCGA-55-6987-01 19 20044359 20044359 A T ZNF93 Nonsense_Mutation p.K199* 0.11 TCGA-55-6987-01 19 30935893 30935893 G A ZNF536 Missense_Mutation p.S475N 0.09 tolerated(0.37) benign(0.002) TCGA-55-6987-01 19 33588673 33588673 G C GPATCH1 Missense_Mutation p.G289R 0.14 deleterious(0) probably_damaging(0.993) TCGA-55-6987-01 19 33588674 33588674 G T GPATCH1 Missense_Mutation p.G289V 0.14 deleterious(0) probably_damaging(0.993) TCGA-55-6987-01 19 36159427 36159427 G A UPK1A Missense_Mutation p.M52I 0.13 deleterious(0.03) benign(0.016) TCGA-55-6987-01 19 39018978 39018978 G T RYR1 Silent p.V3619V 0.10 TCGA-55-6987-01 19 43420572 43420572 T - PSG6 Frame_Shift_Del p.V45Ffs*28 0.12 TCGA-55-6987-01 19 47570385 47570385 G A ZC3H4 Missense_Mutation p.S1047F 0.16 unknown(0) TCGA-55-6987-01 19 51298098 51298098 C G ACPT Missense_Mutation p.L348V 0.11 tolerated(0.13) probably_damaging(0.996) TCGA-55-6987-01 19 52519665 52519665 C G ZNF614 Missense_Mutation p.E396Q 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-55-6987-01 19 57335782 57335782 G T PEG3 Missense_Mutation p.T81N 0.11 deleterious(0.01) benign(0.056) TCGA-55-6987-01 19 57641439 57641439 C A USP29 Missense_Mutation p.P466T 0.22 deleterious(0.01) possibly_damaging(0.796) TCGA-55-6987-01 19 57641440 57641440 C A USP29 Missense_Mutation p.P466H 0.22 deleterious(0) probably_damaging(0.969) TCGA-55-6987-01 19 58439276 58439276 C A ZNF418 Missense_Mutation p.L91F 0.28 tolerated(0.07) probably_damaging(0.969) TCGA-55-6987-01 19 9047455 9047455 T A MUC16 Silent p.P11392P 0.15 TCGA-55-6987-01 1 103352393 103352393 G T COL11A1 Missense_Mutation p.L1610M 0.07 unknown(0) TCGA-55-6987-01 1 10381774 10381774 G T KIF1B Missense_Mutation p.W693C 0.08 deleterious(0) probably_damaging(0.997) TCGA-55-6987-01 1 149885253 149885253 G C SV2A Missense_Mutation p.S47C 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.512) TCGA-55-6987-01 1 150974245 150974245 G A FAM63A Missense_Mutation p.P204L 0.22 tolerated(0.08) benign(0.044) TCGA-55-6987-01 1 153932779 153932779 C T SLC39A1 Missense_Mutation p.G257D 0.25 deleterious(0) probably_damaging(1) TCGA-55-6987-01 1 153974274 153974274 G T NUP210L Missense_Mutation p.S1706R 0.06 deleterious(0.03) benign(0.049) TCGA-55-6987-01 1 155237835 155237835 C G CLK2 Missense_Mutation p.E212Q 0.07 tolerated(0.05) probably_damaging(0.991) TCGA-55-6987-01 1 155238556 155238556 C G CLK2 Missense_Mutation p.E143Q 0.11 tolerated(0.13) benign(0.005) TCGA-55-6987-01 1 158450525 158450525 T C OR10R2 Silent p.Y286Y 0.21 TCGA-55-6987-01 1 158669964 158669964 G A OR6K2 Missense_Mutation p.A160V 0.33 tolerated(1) benign(0.008) TCGA-55-6987-01 1 158687325 158687325 A T OR6K3 Missense_Mutation p.M194K 0.09 deleterious(0.04) benign(0.158) TCGA-55-6987-01 1 158817647 158817647 C T MNDA Nonsense_Mutation p.Q373* 0.27 TCGA-55-6987-01 1 160104960 160104960 G T ATP1A2 Missense_Mutation p.G664C 0.20 deleterious(0) probably_damaging(1) TCGA-55-6987-01 1 160771687 160771687 G A LY9 Intron 0.06 TCGA-55-6987-01 1 160990842 160990842 C G F11R Missense_Mutation p.E8Q 0.18 deleterious_low_confidence(0.03) benign(0.131) TCGA-55-6987-01 1 175116197 175116197 G A TNN Missense_Mutation p.R1297Q 0.25 deleterious(0.01) unknown(0) TCGA-55-6987-01 1 197168484 197168484 C T ZBTB41 Missense_Mutation p.G374R 0.09 deleterious(0.01) probably_damaging(0.961) TCGA-55-6987-01 1 204924029 204924029 G T NFASC Missense_Mutation p.C162F 0.14 deleterious(0) probably_damaging(1) TCGA-55-6987-01 1 213181770 213181770 C G ANGEL2 Missense_Mutation p.D142H 0.06 tolerated(0.29) benign(0) TCGA-55-6987-01 1 214813858 214813858 C G CENPF Missense_Mutation p.S726C 0.15 possibly_damaging(0.77) TCGA-55-6987-01 1 218504365 218504365 G T RRP15 Missense_Mutation p.D261Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-6987-01 1 223178684 223178684 G A DISP1 Silent p.L1315L 0.19 TCGA-55-6987-01 1 228345700 228345700 G A GJC2 Missense_Mutation p.V81I 0.12 deleterious(0.01) probably_damaging(0.924) TCGA-55-6987-01 1 230401018 230401018 G A GALNT2 Missense_Mutation p.A449T 0.08 tolerated(0.51) benign(0.089) TCGA-55-6987-01 1 236740143 236740143 C G HEATR1 Silent p.L954L 0.14 TCGA-55-6987-01 1 248263597 248263597 T C OR2L13 Missense_Mutation p.F307S 0.07 deleterious(0.03) benign(0.028) TCGA-55-6987-01 1 248616607 248616607 G T OR2T2 Missense_Mutation p.C170F 0.13 deleterious(0) possibly_damaging(0.822) TCGA-55-6987-01 1 28800535 28800535 G A PHACTR4 Missense_Mutation p.M441I 0.17 tolerated(0.14) benign(0.001) TCGA-55-6987-01 1 32672206 32672206 G C IQCC Missense_Mutation p.E175Q 0.09 tolerated(0.09) benign(0.225) TCGA-55-6987-01 1 35227474 35227474 T C GJB4 Missense_Mutation p.Y207H 0.08 deleterious(0.02) benign(0.401) TCGA-55-6987-01 1 36054008 36054008 C A TFAP2E Missense_Mutation p.P214T 0.09 tolerated(0.1) possibly_damaging(0.739) TCGA-55-6987-01 1 36940986 36940986 C A CSF3R Missense_Mutation p.R118L 0.10 deleterious(0.03) possibly_damaging(0.58) TCGA-55-6987-01 1 39927621 39927621 A G MACF1 Missense_Mutation p.Y5138C 0.28 probably_damaging(0.987) TCGA-55-6987-01 1 40035545 40035545 G A PABPC4 Silent p.F211F 0.12 TCGA-55-6987-01 1 52940766 52940766 G A ZCCHC11 Missense_Mutation p.S822L 0.15 tolerated(0.11) benign(0.004) TCGA-55-6987-01 1 66067104 66067104 A G LEPR Missense_Mutation p.T342A 0.09 tolerated(0.2) possibly_damaging(0.679) TCGA-55-6987-01 1 67142663 67142663 G T AL139147.1 5'UTR 0.14 TCGA-55-6987-01 1 79404939 79404939 A G ELTD1 Silent p.N110N 0.35 TCGA-55-6987-01 20 17934694 17934694 C T SNX5 Missense_Mutation p.G112D 0.07 deleterious(0.02) probably_damaging(1) TCGA-55-6987-01 20 30309467 30309467 G A BCL2L1 Silent p.N185N 0.10 TCGA-55-6987-01 20 30421631 30421631 C T MYLK2 3'UTR 0.17 TCGA-55-6987-01 20 39832030 39832030 C G ZHX3 Silent p.L509L 0.15 TCGA-55-6987-01 20 39832452 39832452 C G ZHX3 Missense_Mutation p.E369Q 0.11 deleterious(0) probably_damaging(1) TCGA-55-6987-01 20 58569350 58569350 C T CDH26 Missense_Mutation p.S491F 0.14 deleterious(0.05) benign(0.305) TCGA-55-6987-01 20 61299190 61299190 C A SLCO4A1 Missense_Mutation p.D522E 0.16 deleterious(0.03) benign(0.383) TCGA-55-6987-01 21 41550914 41550914 T C DSCAM Missense_Mutation p.K963E 0.08 tolerated(1) benign(0.005) TCGA-55-6987-01 21 42830502 42830502 C T MX1 Silent p.F602F 0.06 TCGA-55-6987-01 21 45738472 45738472 G A PFKL Silent p.V352V 0.21 TCGA-55-6987-01 21 45994036 45994036 C T KRTAP10-4 Missense_Mutation p.S134L 0.06 tolerated(0.1) unknown(0) TCGA-55-6987-01 22 31484501 31484501 C G SMTN Missense_Mutation p.S68C 0.15 deleterious(0) possibly_damaging(0.897) TCGA-55-6987-01 22 37268425 37268425 T C NCF4 Silent p.D195D 0.17 TCGA-55-6987-01 22 37769903 37769903 C A ELFN2 Missense_Mutation p.D558Y 0.10 deleterious(0) probably_damaging(0.984) TCGA-55-6987-01 22 38274173 38274173 G C EIF3L Missense_Mutation p.D524H 0.11 deleterious(0) probably_damaging(0.997) TCGA-55-6987-01 22 39355561 39355561 C A APOBEC3A Missense_Mutation p.P15Q 0.12 tolerated(0.5) probably_damaging(0.999) TCGA-55-6987-01 22 41783534 41783534 A G TEF Missense_Mutation p.S113G 0.11 deleterious(0.05) benign(0.013) TCGA-55-6987-01 22 44602295 44602295 G T PARVG Missense_Mutation p.A329S 0.17 tolerated_low_confidence(0.89) benign(0) TCGA-55-6987-01 2 11053761 11053761 C - KCNF1 Frame_Shift_Del p.I405Sfs*25 0.12 TCGA-55-6987-01 2 170096037 170096037 C A LRP2 Missense_Mutation p.A1432S 0.17 benign(0.15) TCGA-55-6987-01 2 171863128 171863128 C G TLK1 Missense_Mutation p.E542Q 0.09 tolerated(0.09) possibly_damaging(0.875) TCGA-55-6987-01 2 189861944 189861944 G A COL3A1 Silent p.Q605Q 0.14 TCGA-55-6987-01 2 1926775 1926775 C T MYT1L Missense_Mutation p.D256N 0.08 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-55-6987-01 2 215838676 215838676 G C ABCA12 Silent p.V1853V 0.15 TCGA-55-6987-01 2 216288072 216288072 C A FN1 Splice_Site p.X465_splice 0.24 TCGA-55-6987-01 2 25462066 25462066 C G DNMT3A Missense_Mutation p.D781H 0.10 deleterious(0) probably_damaging(0.999) TCGA-55-6987-01 2 26684613 26684613 G C OTOF Silent p.L1828L 0.08 TCGA-55-6987-01 2 42671645 42671645 C G KCNG3 Missense_Mutation p.C247S 0.05 deleterious(0.01) probably_damaging(0.937) TCGA-55-6987-01 3 115738360 115738360 A T LSAMP Splice_Site p.X172_splice 0.18 TCGA-55-6987-01 3 123010084 123010084 T C ADCY5 Missense_Mutation p.E1068G 0.06 deleterious(0) probably_damaging(0.968) TCGA-55-6987-01 3 184294827 184294827 G T EPHB3 Missense_Mutation p.G404C 0.26 deleterious(0.01) possibly_damaging(0.874) TCGA-55-6987-01 3 194790681 194790681 C A XXYLT1 Silent p.V315V 0.20 TCGA-55-6987-01 3 43381790 43381790 G T SNRK Missense_Mutation p.R248L 0.15 deleterious(0) possibly_damaging(0.657) TCGA-55-6987-01 3 44841922 44841922 G C KIF15 Silent p.L405L 0.06 TCGA-55-6987-01 3 46009515 46009515 C T FYCO1 Silent p.L437L 0.06 TCGA-55-6987-01 3 49045055 49045055 G C WDR6 Intron 0.30 TCGA-55-6987-01 3 62543142 62543142 G A CADPS Missense_Mutation p.A564V 0.10 deleterious(0) benign(0.241) TCGA-55-6987-01 3 7620456 7620456 C T GRM7 Silent p.V621V 0.18 TCGA-55-6987-01 4 111474511 111474511 C G ENPEP Missense_Mutation p.Q848E 0.06 deleterious(0) probably_damaging(0.999) TCGA-55-6987-01 4 115856489 115856489 A T NDST4 Missense_Mutation p.V470D 0.19 deleterious(0) probably_damaging(0.998) TCGA-55-6987-01 4 48501637 48501637 T G FRYL Missense_Mutation p.L2948F 0.05 deleterious(0) possibly_damaging(0.611) TCGA-55-6987-01 4 69337200 69337200 G T TMPRSS11E Missense_Mutation p.A117S 0.11 tolerated(0.05) benign(0.372) TCGA-55-6987-01 4 70074116 70074116 C A UGT2B11 Nonsense_Mutation p.E319* 0.07 TCGA-55-6987-01 5 102364588 102364588 C - PAM Intron 0.18 TCGA-55-6987-01 5 10988283 10988283 T A CTNND2 Missense_Mutation p.S1095C 0.11 deleterious(0.01) possibly_damaging(0.469) TCGA-55-6987-01 5 11111044 11111044 C T CTNND2 Missense_Mutation p.E797K 0.06 tolerated(0.07) benign(0.029) TCGA-55-6987-01 5 127673703 127673703 C A FBN2 Missense_Mutation p.R1195L 0.12 tolerated(0.09) benign(0.023) TCGA-55-6987-01 5 132149857 132149857 G C SOWAHA Missense_Mutation p.A182P 0.17 tolerated(0.3) possibly_damaging(0.708) TCGA-55-6987-01 5 134914167 134914167 C G CXCL14 Missense_Mutation p.E55Q 0.06 deleterious(0.01) probably_damaging(0.913) TCGA-55-6987-01 5 140201934 140201934 G T PCDHA5 Nonsense_Mutation p.E192* 0.14 TCGA-55-6987-01 5 140230332 140230332 C A PCDHA9 Nonsense_Mutation p.S751* 0.13 TCGA-55-6987-01 5 150501775 150501775 C T ANXA6 Missense_Mutation p.R427K 0.20 tolerated(1) benign(0.003) TCGA-55-6987-01 5 156593047 156593047 G C FAM71B Missense_Mutation p.P45A 0.09 deleterious(0) probably_damaging(0.933) TCGA-55-6987-01 5 175913446 175913446 G C FAF2 Missense_Mutation p.D75H 0.12 tolerated(0.1) benign(0.071) TCGA-55-6987-01 5 179201778 179201778 C G MAML1 Missense_Mutation p.S984C 0.04 tolerated(0.07) benign(0.401) TCGA-55-6987-01 5 179320456 179320456 C A TBC1D9B Missense_Mutation p.V197L 0.22 tolerated(0.11) possibly_damaging(0.633) TCGA-55-6987-01 5 179564898 179564898 G T RASGEF1C Missense_Mutation p.P52H 0.20 deleterious(0) probably_damaging(0.998) TCGA-55-6987-01 5 180056988 180056988 C T FLT4 Missense_Mutation p.G211R 0.11 tolerated(0.13) benign(0.005) TCGA-55-6987-01 5 180432341 180432341 G C BTNL3 Silent p.V290V 0.13 TCGA-55-6987-01 5 21755753 21755753 C T CDH12 Missense_Mutation p.G611E 0.17 deleterious(0) possibly_damaging(0.876) TCGA-55-6987-01 5 23523430 23523430 G C PRDM9 Missense_Mutation p.V305L 0.09 deleterious(0) benign(0.001) TCGA-55-6987-01 5 39376765 39376765 C T DAB2 Silent p.L708L 0.09 TCGA-55-6987-01 5 78573820 78573820 G A JMY Missense_Mutation p.E374K 0.16 tolerated(0.07) possibly_damaging(0.834) TCGA-55-6987-01 5 9237963 9237963 A C SEMA5A Missense_Mutation p.C104G 0.10 deleterious(0) probably_damaging(0.999) TCGA-55-6987-01 5 9237964 9237964 G T SEMA5A Silent p.A103A 0.09 TCGA-55-6987-01 6 133093332 133093332 C G SLC18B1 Missense_Mutation p.E367Q 0.07 tolerated(0.06) probably_damaging(0.934) TCGA-55-6987-01 6 158923470 158923470 G T TULP4 Missense_Mutation p.L925F 0.11 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-55-6987-01 6 165746548 165746548 G A PDE10A Missense_Mutation p.S779F 0.10 deleterious_low_confidence(0.01) benign(0.133) TCGA-55-6987-01 6 25770342 25770342 C G SLC17A4 Missense_Mutation p.S115R 0.11 deleterious(0.01) benign(0.376) TCGA-55-6987-01 6 42851305 42851305 G T RPL7L1 Missense_Mutation p.L79F 0.11 tolerated(0.63) possibly_damaging(0.762) TCGA-55-6987-01 6 66054009 66054009 G T EYS Nonsense_Mutation p.C507* 0.21 TCGA-55-6987-01 6 74072439 74072439 G T KHDC3L 5'UTR 0.33 TCGA-55-6987-01 6 7572109 7572109 C A DSP Nonsense_Mutation p.C646* 0.13 TCGA-55-6987-01 6 93982064 93982064 C A EPHA7 Missense_Mutation p.E467D 0.13 tolerated(0.85) benign(0.001) TCGA-55-6987-01 6 99854026 99854026 C T PNISR Missense_Mutation p.E295K 0.08 tolerated(0.09) possibly_damaging(0.626) TCGA-55-6987-01 7 100074925 100074925 A T TSC22D4 Nonsense_Mutation p.L246* 0.18 TCGA-55-6987-01 7 100359846 100359846 C A ZAN Missense_Mutation p.S1284Y 0.17 unknown(0) TCGA-55-6987-01 7 100730422 100730422 G C TRIM56 5'UTR 0.25 TCGA-55-6987-01 7 115581871 115581871 G A TFEC Intron 0.11 TCGA-55-6987-01 7 122221328 122221328 C T CADPS2 Missense_Mutation p.D414N 0.05 deleterious(0) probably_damaging(0.996) TCGA-55-6987-01 7 129919434 129919434 A T CPA2 Missense_Mutation p.S307C 0.15 deleterious(0) probably_damaging(1) TCGA-55-6987-01 7 133984945 133984945 T A SLC35B4 Nonsense_Mutation p.K186* 0.17 TCGA-55-6987-01 7 139107090 139107090 G T LUC7L2 3'UTR 0.09 TCGA-55-6987-01 7 150732978 150732978 G T ABCB8 Missense_Mutation p.A313S 0.17 tolerated(0.23) benign(0.421) TCGA-55-6987-01 7 25266592 25266592 A G NPVF Silent p.D64D 0.07 TCGA-55-6987-01 7 43917438 43917438 G A URGCP Missense_Mutation p.H542Y 0.08 tolerated(1) benign(0.002) TCGA-55-6987-01 7 55565370 55565370 C T VOPP1 Missense_Mutation p.E43K 0.08 deleterious(0) probably_damaging(0.98) TCGA-55-6987-01 7 77764519 77764519 C A MAGI2 Silent p.V950V 0.09 TCGA-55-6987-01 7 92734035 92734035 C A SAMD9 Missense_Mutation p.R459L 0.11 deleterious(0.03) possibly_damaging(0.532) TCGA-55-6987-01 7 93112125 93112125 G A CALCR Intron 0.06 TCGA-55-6987-01 7 98609091 98609091 G T TRRAP Missense_Mutation p.G3743V 0.10 probably_damaging(0.939) TCGA-55-6987-01 8 105160897 105160897 G T RIMS2 Intron 0.16 TCGA-55-6987-01 8 122626563 122626563 G A HAS2 Missense_Mutation p.S482L 0.11 tolerated(0.15) benign(0.036) TCGA-55-6987-01 8 122626832 122626832 G C HAS2 Silent p.A392A 0.11 TCGA-55-6987-01 8 134050875 134050875 T A SLA Missense_Mutation p.E282V 0.17 tolerated(0.07) possibly_damaging(0.707) TCGA-55-6987-01 8 30695150 30695150 C T TEX15 Missense_Mutation p.D2501N 0.09 tolerated(0.21) benign(0.016) TCGA-55-6987-01 8 33247083 33247083 T A FUT10 Nonsense_Mutation p.K204* 0.07 TCGA-55-6987-01 8 37687465 37687465 C G GPR124 Silent p.L217L 0.12 TCGA-55-6987-01 8 48746951 48746951 C G PRKDC Missense_Mutation p.R2652T 0.05 benign(0.166) TCGA-55-6987-01 9 111956512 111956512 G T EPB41L4B Silent p.S737S 0.10 TCGA-55-6987-01 9 117852847 117852847 C T TNC Missense_Mutation p.A151T 0.12 deleterious(0.01) probably_damaging(0.955) TCGA-55-6987-01 9 120470885 120470885 C G TLR4 Nonsense_Mutation p.Y46* 0.07 TCGA-55-6987-01 9 125148786 125148786 G T PTGS1 Missense_Mutation p.Q357H 0.15 deleterious(0.02) benign(0.011) TCGA-55-6987-01 9 125424358 125424358 C T OR1L1 Missense_Mutation p.R122C 0.13 deleterious(0.01) benign(0.176) TCGA-55-6987-01 9 136672411 136672411 G A VAV2 Missense_Mutation p.A235V 0.09 tolerated(0.29) benign(0.008) TCGA-55-6987-01 9 140005079 140005079 G C DPP7 3'UTR 0.14 TCGA-55-6987-01 9 14747282 14747282 C T FREM1 Missense_Mutation p.D1997N 0.10 tolerated(0.1) benign(0.025) TCGA-55-6987-01 9 14808064 14808064 G T FREM1 Missense_Mutation p.P988T 0.15 tolerated(0.4) benign(0.002) TCGA-55-6987-01 9 35095173 35095173 G A PIGO Silent p.T130T 0.14 TCGA-55-6987-01 9 35107819 35107819 G A FAM214B Silent p.S151S 0.08 TCGA-55-6987-01 9 78936433 78936433 G T PCSK5 Missense_Mutation p.G1300V 0.15 tolerated(0.29) benign(0.051) TCGA-55-6987-01 X 106310824 106310824 G C RBM41 Nonsense_Mutation p.S392* 0.14 TCGA-55-6987-01 X 111195531 111195531 C A TRPC5 Missense_Mutation p.V40L 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-55-6987-01 X 130220003 130220003 C T ARHGAP36 Silent p.H407H 0.22 TCGA-55-6987-01 X 132160157 132160157 G A USP26 Nonsense_Mutation p.R698* 0.11 TCGA-55-6987-01 X 132351910 132351910 C A TFDP3 Silent p.G126G 0.33 TCGA-55-6987-01 X 14027091 14027091 C A GEMIN8 Missense_Mutation p.D224Y 0.16 deleterious(0) probably_damaging(0.988) TCGA-55-6987-01 X 150573509 150573509 G T VMA21 Missense_Mutation p.W95C 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-55-6987-01 X 151093075 151093075 G A MAGEA4 Silent p.E313E 0.27 TCGA-55-6987-01 X 153095805 153095805 A T PDZD4 5'UTR 0.26 TCGA-55-6987-01 X 153996698 153996698 G C DKC1 Missense_Mutation p.M254I 0.18 tolerated(0.12) benign(0.027) TCGA-55-6987-01 X 47269685 47269685 C T ZNF157 Missense_Mutation p.S28L 0.19 deleterious(0) probably_damaging(0.997) TCGA-55-6987-01 X 55755773 55755773 G C RRAGB Missense_Mutation p.L119F 0.14 deleterious(0.01) possibly_damaging(0.536) TCGA-55-6987-01 X 70823587 70823587 G C ACRC Missense_Mutation p.D154H 0.12 unknown(0) TCGA-55-6987-01 X 75004250 75004250 G A MAGEE2 Nonsense_Mutation p.Q213* 0.18 TCGA-55-6987-01 X 79978183 79978183 G C BRWD3 Missense_Mutation p.P585R 0.26 deleterious(0) possibly_damaging(0.854) TCGA-55-6987-01 X 85769388 85769388 C A DACH2 Missense_Mutation p.P212T 0.25 deleterious(0.01) possibly_damaging(0.722) TCGA-55-7227-01 10 105037114 105037114 C T INA Missense_Mutation p.A49V 0.46 tolerated(0.28) benign(0.002) TCGA-55-7227-01 10 13275788 13275788 C T UCMA Missense_Mutation p.G24E 0.26 deleterious(0.02) possibly_damaging(0.619) TCGA-55-7227-01 10 15256525 15256525 G C FAM171A1 Missense_Mutation p.D354E 0.21 deleterious(0) possibly_damaging(0.866) TCGA-55-7227-01 10 34759051 34759051 G C PARD3 Missense_Mutation p.Q182E 0.22 tolerated(0.66) benign(0.028) TCGA-55-7227-01 10 55582689 55582689 C A PCDH15 Missense_Mutation p.Q1601H 0.27 deleterious_low_confidence(0.04) benign(0.014) TCGA-55-7227-01 10 91143794 91143794 G C IFIT1B Missense_Mutation p.E242Q 0.18 deleterious(0) possibly_damaging(0.905) TCGA-55-7227-01 11 113270666 113270666 G T ANKK1 Missense_Mutation p.G659C 0.26 deleterious(0) probably_damaging(0.993) TCGA-55-7227-01 11 113288749 113288749 C G DRD2 Missense_Mutation p.R132T 0.29 deleterious(0) possibly_damaging(0.878) TCGA-55-7227-01 11 118926514 118926514 T C HYOU1 Missense_Mutation p.M45V 0.26 deleterious(0.03) benign(0.247) TCGA-55-7227-01 11 130131094 130131094 G C ZBTB44 Silent p.S225S 0.22 TCGA-55-7227-01 11 30915840 30915840 C T DCDC1 Silent p.Q1616Q 0.32 TCGA-55-7227-01 11 46792440 46792440 T G CKAP5 Missense_Mutation p.E1028D 0.30 deleterious(0.02) possibly_damaging(0.5) TCGA-55-7227-01 11 46907942 46907942 G A LRP4 Silent p.H786H 0.15 TCGA-55-7227-01 11 4870013 4870013 C A OR51S1 Silent p.A142A 0.21 TCGA-55-7227-01 11 49168312 49168312 G T FOLH1 Missense_Mutation p.A750D 0.28 deleterious_low_confidence(0) benign(0.394) TCGA-55-7227-01 11 56143253 56143253 G T OR8U1 Missense_Mutation p.D52Y 0.17 deleterious(0) probably_damaging(0.966) TCGA-55-7227-01 11 59224535 59224535 G A OR4D6 Silent p.V34V 0.35 TCGA-55-7227-01 11 63064845 63064845 G T SLC22A10 Missense_Mutation p.A193S 0.31 deleterious(0.02) possibly_damaging(0.66) TCGA-55-7227-01 11 63137534 63137534 C T SLC22A9 Silent p.A2A 0.25 TCGA-55-7227-01 11 64535613 64535613 G A SF1 Missense_Mutation p.R470C 0.20 deleterious(0.03) probably_damaging(0.93) TCGA-55-7227-01 11 76872035 76872035 T A MYO7A Missense_Mutation p.L406Q 0.31 deleterious(0) probably_damaging(0.995) TCGA-55-7227-01 11 8752646 8752646 C A ST5 Missense_Mutation p.R64L 0.34 tolerated_low_confidence(0.17) benign(0.067) TCGA-55-7227-01 11 89531400 89531400 A T TRIM49 Silent p.T419T 0.27 TCGA-55-7227-01 11 92577839 92577839 C A FAT3 Missense_Mutation p.T3769K 0.21 probably_damaging(0.916) TCGA-55-7227-01 12 106633456 106633456 G A CKAP4 Silent p.H385H 0.39 TCGA-55-7227-01 12 2694555 2694555 G T CACNA1C Nonsense_Mutation p.E785* 0.31 TCGA-55-7227-01 12 43822569 43822569 G T ADAMTS20 Missense_Mutation p.R1175S 0.26 deleterious(0) probably_damaging(1) TCGA-55-7227-01 12 48490160 48490160 T A SENP1 Silent p.T62T 0.40 TCGA-55-7227-01 12 55715320 55715320 T A OR6C1 Nonstop_Mutation p.*313Rext*5 0.38 TCGA-55-7227-01 13 31821177 31821177 C G B3GALTL Silent p.L96L 0.21 TCGA-55-7227-01 13 41933009 41933009 G A NAA16 Missense_Mutation p.D441N 0.25 deleterious(0) probably_damaging(0.999) TCGA-55-7227-01 14 101004741 101004741 G A BEGAIN Silent p.Y449Y 0.24 TCGA-55-7227-01 14 20692792 20692792 T C OR11H6 Silent p.Y308Y 0.29 TCGA-55-7227-01 14 24586552 24586552 G A DCAF11 Missense_Mutation p.G121R 0.25 deleterious(0.03) possibly_damaging(0.467) TCGA-55-7227-01 14 70634687 70634687 A G SLC8A3 Silent p.S151S 0.18 TCGA-55-7227-01 14 74974742 74974742 C T LTBP2 Missense_Mutation p.E1237K 0.29 tolerated(0.07) possibly_damaging(0.69) TCGA-55-7227-01 14 80130221 80130221 G T NRXN3 Missense_Mutation p.R809L 0.19 deleterious(0) possibly_damaging(0.608) TCGA-55-7227-01 14 89044337 89044337 A C ZC3H14 Missense_Mutation p.K378Q 0.20 deleterious(0.02) probably_damaging(0.996) TCGA-55-7227-01 14 92960021 92960021 G T SLC24A4 3'UTR 0.27 TCGA-55-7227-01 15 25436497 25436497 G A SNORD115-11 3'Flank 0.24 TCGA-55-7227-01 15 25436498 25436498 G T SNORD115-11 3'Flank 0.25 TCGA-55-7227-01 15 28483344 28483344 G A HERC2 Silent p.D1256D 0.29 TCGA-55-7227-01 15 48063880 48063880 G T SEMA6D Silent p.T1040T 0.26 TCGA-55-7227-01 15 66729094 66729099 TGGAGA - MAP2K1 In_Frame_Del p.E102_I103del 0.22 TCGA-55-7227-01 15 75977633 75977633 G T CSPG4 Missense_Mutation p.P1400Q 0.23 tolerated(0.08) benign(0.033) TCGA-55-7227-01 15 84651747 84651747 C A ADAMTSL3 Missense_Mutation p.Q1123K 0.19 tolerated(0.06) benign(0.146) TCGA-55-7227-01 15 89758424 89758424 A T RLBP1 Missense_Mutation p.L131Q 0.20 deleterious(0) possibly_damaging(0.528) TCGA-55-7227-01 15 97326886 97326886 A T SPATA8 Translation_Start_Site p.M1? 0.29 tolerated_low_confidence(0.47) benign(0) TCGA-55-7227-01 16 20975684 20975684 G A DNAH3 Silent p.T3174T 0.20 TCGA-55-7227-01 16 3306345 3306345 C A MEFV Silent p.L81L 0.37 TCGA-55-7227-01 16 47698808 47698808 C T PHKB Silent p.R783R 0.17 TCGA-55-7227-01 16 70726775 70726775 A C VAC14 Missense_Mutation p.L712R 0.30 deleterious(0.01) probably_damaging(0.985) TCGA-55-7227-01 16 81902818 81902818 G T PLCG2 Splice_Site p.X160_splice 0.23 TCGA-55-7227-01 17 26874476 26874476 C A UNC119 Intron 0.33 TCGA-55-7227-01 17 26918733 26918733 C T SPAG5 Missense_Mutation p.D474N 0.09 tolerated(0.1) benign(0.057) TCGA-55-7227-01 17 27283251 27283251 G T SEZ6 Missense_Mutation p.P960T 0.38 deleterious(0.03) benign(0.035) TCGA-55-7227-01 17 33255007 33255007 A T CCT6B 3'UTR 0.33 TCGA-55-7227-01 17 39767888 39767888 C - KRT16 Intron 0.20 TCGA-55-7227-01 17 47241448 47241448 A G B4GALNT2 Splice_Site p.X316_splice 0.25 TCGA-55-7227-01 17 5405149 5405149 G A NLRP1 Silent p.D1371D 0.48 TCGA-55-7227-01 17 67215886 67215886 C A ABCA10 Missense_Mutation p.E110D 0.20 tolerated(0.11) benign(0.162) TCGA-55-7227-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.43 deleterious(0) probably_damaging(0.997) TCGA-55-7227-01 18 21501494 21501494 G A LAMA3 Missense_Mutation p.V2708I 0.30 benign(0.006) TCGA-55-7227-01 18 22806842 22806842 A G ZNF521 Missense_Mutation p.V347A 0.21 tolerated(0.65) benign(0.214) TCGA-55-7227-01 18 29049194 29049194 C T DSG3 Silent p.G593G 0.05 TCGA-55-7227-01 18 51813701 51813701 G T POLI Missense_Mutation p.R373L 0.29 deleterious(0) probably_damaging(0.933) TCGA-55-7227-01 18 9256340 9256347 TAGATACA CT ANKRD12 Nonsense_Mutation p.R1026_K1028delins* 0.15 TCGA-55-7227-01 19 16025692 16025692 G T CYP4F11 Missense_Mutation p.Q377K 0.24 tolerated(0.52) benign(0.019) TCGA-55-7227-01 19 23544446 23544446 C A ZNF91 Missense_Mutation p.W445C 0.20 tolerated(0.19) possibly_damaging(0.781) TCGA-55-7227-01 19 23544447 23544447 C A ZNF91 Missense_Mutation p.W445L 0.19 tolerated(0.65) benign(0.168) TCGA-55-7227-01 19 2933768 2933768 C G ZNF77 Missense_Mutation p.E453Q 0.38 tolerated(0.57) possibly_damaging(0.678) TCGA-55-7227-01 19 31048065 31048065 T A ZNF536 Silent p.G1299G 0.26 TCGA-55-7227-01 19 31767716 31767716 G A TSHZ3 Silent p.L995L 0.23 TCGA-55-7227-01 19 38160967 38160967 G T ZNF781 Missense_Mutation p.A28D 0.29 deleterious(0.01) possibly_damaging(0.58) TCGA-55-7227-01 19 9967504 9967504 C T OLFM2 Missense_Mutation p.M222I 0.31 tolerated(0.26) benign(0.017) TCGA-55-7227-01 1 101705375 101705375 G T S1PR1 Missense_Mutation p.D279Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-55-7227-01 1 104114266 104114266 G T AMY2B Missense_Mutation p.W14C 0.22 tolerated(0.18) possibly_damaging(0.469) TCGA-55-7227-01 1 111146525 111146525 G T KCNA2 Missense_Mutation p.R294S 0.23 deleterious(0.01) benign(0.251) TCGA-55-7227-01 1 1139576 1139576 T C TNFRSF18 Intron 0.17 TCGA-55-7227-01 1 1394590 1394590 G T ATAD3C Missense_Mutation p.R264L 0.17 tolerated(0.06) benign(0.069) TCGA-55-7227-01 1 145498663 145498663 G A LIX1L Missense_Mutation p.R300Q 0.30 tolerated(0.11) probably_damaging(0.947) TCGA-55-7227-01 1 153615780 153615780 G T CHTOP Missense_Mutation p.G161C 0.23 deleterious(0.02) unknown(0) TCGA-55-7227-01 1 154098919 154098919 G C NUP210L Missense_Mutation p.D402E 0.33 tolerated(1) benign(0.001) TCGA-55-7227-01 1 154842157 154842157 G T KCNN3 Missense_Mutation p.P95H 0.42 deleterious_low_confidence(0) unknown(0) TCGA-55-7227-01 1 156228861 156228861 A T SMG5 Missense_Mutation p.F793I 0.22 deleterious(0) probably_damaging(0.967) TCGA-55-7227-01 1 167367302 167367302 C T POU2F1 Missense_Mutation p.R401C 0.16 deleterious(0) unknown(0) TCGA-55-7227-01 1 175375733 175375733 C G TNR Missense_Mutation p.V40L 0.26 tolerated_low_confidence(0.26) benign(0.007) TCGA-55-7227-01 1 186099122 186099122 A G HMCN1 Missense_Mutation p.H4310R 0.21 probably_damaging(0.99) TCGA-55-7227-01 1 196799765 196799765 G T CFHR1 Missense_Mutation p.R248L 0.18 tolerated(0.67) probably_damaging(0.996) TCGA-55-7227-01 1 200816775 200816775 T C CAMSAP2 Silent p.I400I 0.09 TCGA-55-7227-01 1 201354831 201354831 G A LAD1 Missense_Mutation p.R377W 0.25 deleterious(0) probably_damaging(0.989) TCGA-55-7227-01 1 201981157 201981165 AAGTGGAGA C ELF3 Frame_Shift_Del p.Q79Pfs*10 0.11 TCGA-55-7227-01 1 228033262 228033262 G C PRSS38 Missense_Mutation p.M225I 0.20 tolerated(0.36) benign(0.113) TCGA-55-7227-01 1 232649900 232649900 C T SIPA1L2 Missense_Mutation p.D396N 0.29 deleterious(0) probably_damaging(0.999) TCGA-55-7227-01 1 234529405 234529405 C A TARBP1 Silent p.P1474P 0.28 TCGA-55-7227-01 1 234584270 234584270 C A TARBP1 Missense_Mutation p.M639I 0.21 deleterious(0.04) probably_damaging(0.991) TCGA-55-7227-01 1 237965171 237965171 T C RYR2 Silent p.D4702D 0.40 TCGA-55-7227-01 1 248128813 248128813 G T OR2AK2 Silent p.L60L 0.30 TCGA-55-7227-01 1 248813888 248813888 G - OR2T27 Frame_Shift_Del p.Q100Nfs*6 0.14 TCGA-55-7227-01 1 36214094 36214094 C A CLSPN Missense_Mutation p.R795L 0.29 deleterious(0.02) benign(0.322) TCGA-55-7227-01 1 62231976 62231976 C A INADL Nonsense_Mutation p.S72* 0.14 TCGA-55-7227-01 1 77094496 77094496 G T ST6GALNAC3 3'UTR 0.41 TCGA-55-7227-01 1 78479167 78479167 C T DNAJB4 Missense_Mutation p.T215I 0.32 deleterious(0.03) possibly_damaging(0.822) TCGA-55-7227-01 20 52574006 52574006 A G BCAS1 Missense_Mutation p.S461P 0.40 tolerated(0.08) benign(0.122) TCGA-55-7227-01 20 57766579 57766579 G T ZNF831 Nonsense_Mutation p.E169* 0.36 TCGA-55-7227-01 20 62839774 62839774 G T MYT1 Missense_Mutation p.G409C 0.50 possibly_damaging(0.764) TCGA-55-7227-01 21 15537574 15537574 A T LIPI Missense_Mutation p.C312S 0.26 tolerated(0.79) benign(0) TCGA-55-7227-01 21 31709544 31709544 G T KRTAP27-1 Missense_Mutation p.S148Y 0.24 deleterious(0.03) probably_damaging(0.924) TCGA-55-7227-01 21 31864160 31864160 C T KRTAP19-3 Missense_Mutation p.C39Y 0.23 deleterious_low_confidence(0.03) unknown(0) TCGA-55-7227-01 21 46642007 46642007 G T ADARB1 Missense_Mutation p.E707D 0.31 tolerated(0.63) possibly_damaging(0.874) TCGA-55-7227-01 22 17072917 17072917 G T CCT8L2 Missense_Mutation p.S175Y 0.32 tolerated(0.57) benign(0.355) TCGA-55-7227-01 22 26937184 26937184 T A TPST2 Missense_Mutation p.Q138L 0.34 tolerated(0.15) benign(0.073) TCGA-55-7227-01 22 42807592 42807592 C T NFAM1 Missense_Mutation p.R91K 0.22 tolerated(0.51) benign(0.039) TCGA-55-7227-01 2 121104187 121104187 C T INHBB Silent p.S141S 0.43 TCGA-55-7227-01 2 152472617 152472617 A T NEB Missense_Mutation p.Y3730N 0.21 probably_damaging(1) TCGA-55-7227-01 2 167760015 167760015 C A XIRP2 Missense_Mutation p.S8Y 0.25 probably_damaging(0.996) TCGA-55-7227-01 2 168115451 168115451 C G XIRP2 3'UTR 0.24 TCGA-55-7227-01 2 170591661 170591661 T G KLHL23 Missense_Mutation p.I46R 0.16 tolerated(0.56) benign(0.001) TCGA-55-7227-01 2 179605555 179605555 A T TTN Missense_Mutation p.N4135K 0.26 TCGA-55-7227-01 2 197943465 197943465 A G ANKRD44 Missense_Mutation p.Y513H 0.39 deleterious(0) probably_damaging(0.999) TCGA-55-7227-01 2 20647902 20647902 G T RHOB 3'UTR 0.24 TCGA-55-7227-01 2 216247049 216247049 C T FN1 Splice_Site p.X1684_splice 0.23 TCGA-55-7227-01 2 217234842 217234842 C T MARCH4 Missense_Mutation p.D48N 0.44 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-55-7227-01 2 219513463 219513463 G A ZNF142 Missense_Mutation p.H390Y 0.29 deleterious(0) benign(0.152) TCGA-55-7227-01 2 220346372 220346372 A T SPEG Silent p.A1845A 0.15 TCGA-55-7227-01 2 227915774 227915774 T C COL4A4 Silent p.P1023P 0.25 TCGA-55-7227-01 2 74754375 74754375 C A AUP1 Missense_Mutation p.K359N 0.23 tolerated(0.16) benign(0.016) TCGA-55-7227-01 2 89544374 89544374 G C IGKV2-30 Missense_Mutation p.P84A 0.25 deleterious(0) possibly_damaging(0.575) TCGA-55-7227-01 2 90078188 90078188 G T IGKV3D-20 Missense_Mutation p.R75S 0.23 tolerated(0.06) possibly_damaging(0.901) TCGA-55-7227-01 2 96957582 96957582 C A SNRNP200 Silent p.R739R 0.27 TCGA-55-7227-01 3 129546826 129546826 C G TMCC1 Missense_Mutation p.K132N 0.30 deleterious_low_confidence(0.01) benign(0.212) TCGA-55-7227-01 3 148577614 148577614 G A CPB1 Missense_Mutation p.G360E 0.28 deleterious(0) probably_damaging(1) TCGA-55-7227-01 3 179437822 179437822 G T USP13 Silent p.G300G 0.26 TCGA-55-7227-01 3 4725425 4725425 G T ITPR1 Missense_Mutation p.Q1132H 0.23 tolerated(0.15) benign(0.429) TCGA-55-7227-01 3 4725426 4725426 G T ITPR1 Missense_Mutation p.G1133C 0.23 deleterious(0.01) probably_damaging(1) TCGA-55-7227-01 3 49138148 49138148 T A QARS Intron 0.25 TCGA-55-7227-01 3 49694806 49694806 G A BSN Missense_Mutation p.R2606Q 0.18 unknown(0) TCGA-55-7227-01 3 49940901 49940901 T C MST1R Missense_Mutation p.S48G 0.09 tolerated(0.2) possibly_damaging(0.665) TCGA-55-7227-01 3 77571938 77571938 A G ROBO2 Silent p.K289K 0.21 TCGA-55-7227-01 4 124323066 124323066 G T SPRY1 Missense_Mutation p.R107M 0.21 deleterious(0) probably_damaging(0.996) TCGA-55-7227-01 4 148744059 148744059 G A ARHGAP10 Missense_Mutation p.R88H 0.23 tolerated(0.18) benign(0.027) TCGA-55-7227-01 4 164534479 164534479 G T MARCH1 Missense_Mutation p.Q77K 0.30 tolerated(0.29) benign(0.022) TCGA-55-7227-01 4 169842725 169842725 A G PALLD Missense_Mutation p.D964G 0.20 deleterious(0.03) benign(0.046) TCGA-55-7227-01 4 170912985 170912985 C T MFAP3L Missense_Mutation p.M258I 0.21 tolerated(0.06) benign(0.094) TCGA-55-7227-01 4 170994373 170994373 T C AADAT Missense_Mutation p.T190A 0.25 tolerated(0.76) benign(0.011) TCGA-55-7227-01 4 175598431 175598431 C T GLRA3 Missense_Mutation p.C242Y 0.19 deleterious(0.01) probably_damaging(0.989) TCGA-55-7227-01 4 55962434 55962434 T A KDR Missense_Mutation p.N897I 0.29 deleterious(0) probably_damaging(1) TCGA-55-7227-01 4 95220559 95220559 G T HPGDS 3'UTR 0.18 TCGA-55-7227-01 5 115202398 115202398 A T AP3S1 Missense_Mutation p.E34V 0.45 deleterious(0) possibly_damaging(0.756) TCGA-55-7227-01 5 121188504 121188504 C G FTMT 3'UTR 0.52 TCGA-55-7227-01 5 131796387 131796387 G T C5orf56 Missense_Mutation p.W74C 0.33 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-55-7227-01 5 136974696 136974696 C A KLHL3 Missense_Mutation p.A389S 0.36 deleterious(0.01) benign(0.317) TCGA-55-7227-01 5 140230238 140230238 G T PCDHA9 Missense_Mutation p.V720L 0.35 deleterious_low_confidence(0.01) benign(0.017) TCGA-55-7227-01 5 140562501 140562501 G T PCDHB16 Missense_Mutation p.V123L 0.40 tolerated_low_confidence(0.26) possibly_damaging(0.468) TCGA-55-7227-01 5 140870004 140870004 T A PCDHGC5 Silent p.P399P 0.23 TCGA-55-7227-01 5 147795497 147795497 C T FBXO38 Missense_Mutation p.S424L 0.30 tolerated(0.13) probably_damaging(0.974) TCGA-55-7227-01 5 156375476 156375476 G A TIMD4 Silent p.H265H 0.19 TCGA-55-7227-01 5 156766100 156766100 G T CYFIP2 Silent p.T781T 0.18 TCGA-55-7227-01 5 169502961 169502961 T C DOCK2 Missense_Mutation p.L1580S 0.35 deleterious(0) possibly_damaging(0.891) TCGA-55-7227-01 5 176011684 176011684 T A CDHR2 Missense_Mutation p.V801E 0.30 deleterious(0) probably_damaging(0.996) TCGA-55-7227-01 5 178559242 178559242 C T ADAMTS2 Missense_Mutation p.S760N 0.32 deleterious(0.01) benign(0.009) TCGA-55-7227-01 5 23522469 23522469 C T PRDM9 Missense_Mutation p.H189Y 0.34 tolerated(0.21) benign(0.037) TCGA-55-7227-01 5 35776446 35776446 A G SPEF2 Missense_Mutation p.Y1389C 0.31 deleterious(0) probably_damaging(0.998) TCGA-55-7227-01 5 36680558 36680558 G T SLC1A3 Missense_Mutation p.V386F 0.21 deleterious(0) possibly_damaging(0.793) TCGA-55-7227-01 5 82940257 82940257 C T HAPLN1 Missense_Mutation p.G234R 0.25 deleterious(0) probably_damaging(1) TCGA-55-7227-01 6 50712888 50712888 G T TFAP2D Nonsense_Mutation p.G318* 0.27 TCGA-55-7227-01 6 55924902 55924902 G A COL21A1 Missense_Mutation p.P841L 0.40 tolerated(0.17) benign(0) TCGA-55-7227-01 6 86350039 86350040 - TT SYNCRIP Frame_Shift_Ins p.S92Kfs*9 0.24 TCGA-55-7227-01 7 124503423 124503423 C A POT1 Missense_Mutation p.G176V 0.18 deleterious(0.01) benign(0.342) TCGA-55-7227-01 7 130021575 130021575 C T CPA1 Silent p.I84I 0.26 TCGA-55-7227-01 7 134261132 134261132 G T AKR1B15 Missense_Mutation p.D259Y 0.23 deleterious(0) probably_damaging(0.987) TCGA-55-7227-01 7 142562013 142562013 G A EPHB6 Nonsense_Mutation p.W152* 0.04 TCGA-55-7227-01 7 143020446 143020446 C A CLCN1 Missense_Mutation p.S247R 0.23 deleterious(0) probably_damaging(0.992) TCGA-55-7227-01 7 143079777 143079777 G T ZYX Missense_Mutation p.R167L 0.30 deleterious(0) possibly_damaging(0.628) TCGA-55-7227-01 7 143748153 143748153 G A OR2A5 Missense_Mutation p.R220H 0.23 tolerated(0.74) benign(0.021) TCGA-55-7227-01 7 150171416 150171416 G T GIMAP8 Silent p.L333L 0.32 TCGA-55-7227-01 7 150923583 150923583 G A ABCF2 5'UTR 0.21 TCGA-55-7227-01 7 4900413 4900413 T A PAPOLB Missense_Mutation p.K342N 0.29 tolerated(0.17) probably_damaging(0.993) TCGA-55-7227-01 7 50513887 50513887 C A FIGNL1 Nonsense_Mutation p.E367* 0.30 TCGA-55-7227-01 7 57510015 57510015 C T ZNF716 Silent p.P7P 0.26 TCGA-55-7227-01 7 6622934 6622934 C T ZDHHC4 Intron 0.11 TCGA-55-7227-01 7 82583161 82583161 C A PCLO Nonsense_Mutation p.E2370* 0.35 TCGA-55-7227-01 7 84628977 84628977 G T SEMA3D Missense_Mutation p.L705I 0.17 tolerated(0.42) benign(0.046) TCGA-55-7227-01 8 106573688 106573688 G T ZFPM2 Missense_Mutation p.M133I 0.14 tolerated(1) benign(0.002) TCGA-55-7227-01 8 116616327 116616327 C T TRPS1 Silent p.S623S 0.16 TCGA-55-7227-01 8 144239832 144239832 T C LY6H Silent p.S107S 0.23 TCGA-55-7227-01 8 43046619 43046619 G T HGSNAT Missense_Mutation p.E377D 0.27 tolerated(0.36) benign(0.008) TCGA-55-7227-01 8 65528462 65528462 T G CYP7B1 Silent p.L212L 0.33 TCGA-55-7227-01 8 75276523 75276523 G C GDAP1 Missense_Mutation p.G333A 0.19 tolerated(0.33) benign(0.005) TCGA-55-7227-01 8 82357106 82357106 G A PMP2 Silent p.S64S 0.20 TCGA-55-7227-01 8 87229978 87229978 A - SLC7A13 Frame_Shift_Del p.F300Lfs*5 0.34 TCGA-55-7227-01 9 103310116 103310116 A T TMEFF1 Silent p.R217R 0.29 TCGA-55-7227-01 9 113194765 113194765 T C SVEP1 Missense_Mutation p.N1737S 0.27 benign(0.361) TCGA-55-7227-01 9 125437962 125437962 T A OR1L3 Missense_Mutation p.L185Q 0.26 deleterious(0) probably_damaging(0.988) TCGA-55-7227-01 9 137779022 137779022 C A FCN2 Missense_Mutation p.L235M 0.23 tolerated(0.05) possibly_damaging(0.786) TCGA-55-7227-01 9 138557593 138557593 A G LCN9 Missense_Mutation p.N157S 0.21 tolerated(0.23) benign(0.123) TCGA-55-7227-01 9 138591341 138591341 G A SOHLH1 5'UTR 0.30 TCGA-55-7227-01 9 139929107 139929107 C A C9orf139 Silent p.P58P 0.27 TCGA-55-7227-01 9 15506585 15506585 G A PSIP1 Silent p.P41P 0.16 TCGA-55-7227-01 9 2717964 2717964 C A KCNV2 Missense_Mutation p.D75E 0.26 tolerated(0.74) benign(0.003) TCGA-55-7227-01 9 32635536 32635536 G A TAF1L Silent p.T14T 0.19 TCGA-55-7227-01 X 134421119 134421119 G T ZNF75D Missense_Mutation p.H495N 0.49 deleterious(0) probably_damaging(0.945) TCGA-55-7227-01 X 136649658 136649658 C A ZIC3 Silent p.R270R 0.48 TCGA-55-7227-01 X 152807814 152807814 A T ATP2B3 Missense_Mutation p.Q233L 0.62 deleterious(0) probably_damaging(0.983) TCGA-55-7227-01 X 15339751 15339751 C G PIGA Missense_Mutation p.W444C 0.56 deleterious(0) probably_damaging(0.99) TCGA-55-7227-01 X 1585308 1585308 C A P2RY8 Silent p.L48L 0.44 TCGA-55-7227-01 X 1585309 1585309 A G P2RY8 Missense_Mutation p.L48P 0.44 deleterious(0) probably_damaging(0.997) TCGA-55-7227-01 X 21613104 21613104 G C CNKSR2 Missense_Mutation p.E615Q 0.42 deleterious(0) probably_damaging(1) TCGA-55-7227-01 X 73046729 73046729 C A XIST RNA 0.67 TCGA-55-7227-01 X 73046730 73046730 C A XIST RNA 0.64 TCGA-55-7227-01 X 92927525 92927525 G C NAP1L3 Missense_Mutation p.A260G 0.55 deleterious_low_confidence(0.01) probably_damaging(0.918) TCGA-55-7281-01 10 102054719 102054719 A G PKD2L1 Silent p.F506F 0.40 TCGA-55-7281-01 10 114181795 114181795 T A ACSL5 Splice_Site p.X548_splice 0.07 TCGA-55-7281-01 10 129913899 129913899 A T MKI67 Missense_Mutation p.L258Q 0.25 deleterious(0.02) benign(0.037) TCGA-55-7281-01 10 135165895 135165895 T A PRAP1 Missense_Mutation p.V136E 0.17 deleterious(0) possibly_damaging(0.608) TCGA-55-7281-01 10 23326202 23326202 C G ARMC3 Missense_Mutation p.L805V 0.20 tolerated(0.07) possibly_damaging(0.777) TCGA-55-7281-01 10 48429282 48429282 G T GDF10 Missense_Mutation p.Q202K 0.13 deleterious(0.01) benign(0.224) TCGA-55-7281-01 10 50732561 50732561 T A ERCC6-PGBD3 Silent p.P305P 0.24 TCGA-55-7281-01 10 51589273 51589273 A T NCOA4 3'UTR 0.29 TCGA-55-7281-01 10 56287577 56287577 C T PCDH15 Missense_Mutation p.R51Q 0.16 tolerated_low_confidence(0.34) benign(0.206) TCGA-55-7281-01 10 7214469 7214469 C A SFMBT2 Silent p.A713A 0.24 TCGA-55-7281-01 10 7618933 7618933 G A ITIH5 Silent p.R487R 0.15 TCGA-55-7281-01 10 99771078 99771078 G A CRTAC1 Missense_Mutation p.P14L 0.15 tolerated_low_confidence(0.39) benign(0) TCGA-55-7281-01 10 99771079 99771079 G A CRTAC1 Missense_Mutation p.P14S 0.15 tolerated_low_confidence(0.07) benign(0) TCGA-55-7281-01 11 102395788 102395788 C A MMP7 Silent p.G164G 0.33 TCGA-55-7281-01 11 113660446 113660446 C A ATF4P4 RNA 0.31 TCGA-55-7281-01 11 1151661 1151661 G A MUC5AC Nonsense_Mutation p.W12* 0.33 TCGA-55-7281-01 11 117389380 117389380 G A DSCAML1 Silent p.P497P 0.27 TCGA-55-7281-01 11 119182596 119182596 C T MCAM Missense_Mutation p.G403S 0.39 tolerated(0.21) probably_damaging(1) TCGA-55-7281-01 11 1215422 1215422 G C MUC5AC RNA 0.33 TCGA-55-7281-01 11 122680461 122680461 C T UBASH3B Missense_Mutation p.P606L 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-55-7281-01 11 123901174 123901174 T C OR10G8 Missense_Mutation p.L282P 0.15 deleterious(0) probably_damaging(0.926) TCGA-55-7281-01 11 126283519 126283519 G T ST3GAL4 Missense_Mutation p.E297D 0.21 tolerated(0.76) benign(0.241) TCGA-55-7281-01 11 128781554 128781554 G T KCNJ5 Missense_Mutation p.C129F 0.33 deleterious(0) probably_damaging(1) TCGA-55-7281-01 11 130319288 130319288 C T ADAMTS15 Silent p.P140P 0.38 TCGA-55-7281-01 11 18591865 18591865 G A UEVLD Missense_Mutation p.P85S 0.23 deleterious(0) possibly_damaging(0.734) TCGA-55-7281-01 11 30032227 30032227 G T KCNA4 3'UTR 0.22 TCGA-55-7281-01 11 30942330 30942330 C G DCDC1 Missense_Mutation p.E1096Q 0.30 deleterious(0.04) possibly_damaging(0.607) TCGA-55-7281-01 11 31086701 31086701 C A DCDC1 Splice_Site p.X767_splice 0.29 TCGA-55-7281-01 11 3381280 3381280 T A ZNF195 Missense_Mutation p.I320F 0.14 deleterious(0.01) possibly_damaging(0.84) TCGA-55-7281-01 11 34218979 34218979 C A ABTB2 Missense_Mutation p.W379C 0.16 deleterious(0) probably_damaging(0.963) TCGA-55-7281-01 11 3687438 3687438 C A CHRNA10 Missense_Mutation p.D418Y 0.15 deleterious(0) possibly_damaging(0.905) TCGA-55-7281-01 11 45672284 45672284 G T CHST1 Missense_Mutation p.L64I 0.18 tolerated(0.09) benign(0.37) TCGA-55-7281-01 11 45880390 45880390 A T CRY2 Missense_Mutation p.T166S 0.22 tolerated(0.91) benign(0.001) TCGA-55-7281-01 11 45925561 45925561 C T MAPK8IP1 Silent p.D505D 0.16 TCGA-55-7281-01 11 4621864 4621864 C T TRIM68 Missense_Mutation p.R367K 0.16 tolerated(1) possibly_damaging(0.585) TCGA-55-7281-01 11 46430094 46430094 C A AMBRA1 Missense_Mutation p.E1034D 0.46 tolerated_low_confidence(0.09) benign(0.311) TCGA-55-7281-01 11 46839864 46839864 C A CKAP5 Missense_Mutation p.G83V 0.12 deleterious(0) probably_damaging(0.991) TCGA-55-7281-01 11 47381421 47381421 G A SPI1 Missense_Mutation p.P106S 0.35 tolerated(0.72) benign(0.001) TCGA-55-7281-01 11 48510913 48510913 C A OR4A47 Missense_Mutation p.T190N 0.21 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-55-7281-01 11 5291155 5291155 C A HBE1 5'UTR 0.11 TCGA-55-7281-01 11 55032507 55032507 G - TRIM48 Frame_Shift_Del p.W59Cfs*14 0.22 TCGA-55-7281-01 11 55111360 55111360 G A OR4A16 Silent p.Q228Q 0.14 TCGA-55-7281-01 11 55890472 55890472 G T OR8H3 Missense_Mutation p.M208I 0.16 tolerated(0.52) benign(0.006) TCGA-55-7281-01 11 55927671 55927676 GCCCAC ACCCCAA OR8K5 Frame_Shift_Ins p.V40Lfs*3 0.19 TCGA-55-7281-01 11 55999734 55999734 C T OR5T2 Missense_Mutation p.D310N 0.21 deleterious(0.04) possibly_damaging(0.651) TCGA-55-7281-01 11 56019976 56019980 GCTTG CCTT OR5T3 Frame_Shift_Del p.A101Pfs*54 0.21 TCGA-55-7281-01 11 56954808 56954808 C T LRRC55 Silent p.L294L 0.18 TCGA-55-7281-01 11 57004438 57004438 T A APLNR Missense_Mutation p.D14V 0.34 tolerated(0.05) benign(0.031) TCGA-55-7281-01 11 57947582 57947582 C A OR9Q1 Silent p.I222I 0.26 TCGA-55-7281-01 11 58035220 58035220 C A OR10W1 Silent p.V37V 0.14 TCGA-55-7281-01 11 59271633 59271633 T A OR4D11 Silent p.L195L 0.29 TCGA-55-7281-01 11 6292657 6292657 C A CCKBR Missense_Mutation p.P410T 0.12 tolerated(0.43) benign(0.017) TCGA-55-7281-01 11 64359046 64359046 C G SLC22A12 Silent p.L6L 0.17 TCGA-55-7281-01 11 65631996 65631996 G A MUS81 Missense_Mutation p.R363H 0.12 tolerated(0.5) benign(0.002) TCGA-55-7281-01 11 6913062 6913062 T A OR2D2 Missense_Mutation p.T224S 0.41 tolerated(0.14) benign(0.192) TCGA-55-7281-01 11 69970497 69970497 G C ANO1 Missense_Mutation p.K313N 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-55-7281-01 11 883186 883186 C T CHID1 Silent p.A332A 0.24 TCGA-55-7281-01 12 102071069 102071069 G T MYBPC1 Missense_Mutation p.L995F 0.32 deleterious(0) probably_damaging(1) TCGA-55-7281-01 12 108634140 108634140 C A WSCD2 Missense_Mutation p.D388E 0.07 tolerated(0.12) benign(0.011) TCGA-55-7281-01 12 120966864 120966864 G A COQ5 Silent p.L27L 0.12 TCGA-55-7281-01 12 121855448 121855448 C G RNF34 Missense_Mutation p.L124V 0.21 deleterious(0) probably_damaging(0.983) TCGA-55-7281-01 12 132335517 132335517 G T MMP17 Missense_Mutation p.G504C 0.28 deleterious(0) probably_damaging(0.95) TCGA-55-7281-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.38 deleterious(0.04) probably_damaging(0.993) TCGA-55-7281-01 12 2968029 2968029 A G FOXM1 Silent p.F727F 0.10 TCGA-55-7281-01 12 333641 333641 C A SLC6A13 Missense_Mutation p.V367L 0.15 tolerated(0.16) benign(0.089) TCGA-55-7281-01 12 41365289 41365289 T A CNTN1 Intron 0.12 TCGA-55-7281-01 12 41365291 41365291 T C CNTN1 Intron 0.12 TCGA-55-7281-01 12 44124184 44124184 C A PUS7L Missense_Mutation p.V701F 0.45 deleterious(0.01) possibly_damaging(0.457) TCGA-55-7281-01 12 52911448 52911448 C A KRT5 Missense_Mutation p.A340S 0.12 tolerated(0.07) possibly_damaging(0.555) TCGA-55-7281-01 12 54428292 54428292 C G HOXC5 3'UTR 0.31 TCGA-55-7281-01 12 54577464 54577464 T A SMUG1 Silent p.G87G 0.12 TCGA-55-7281-01 12 57033788 57033788 G A ATP5B Silent p.A421A 0.18 TCGA-55-7281-01 12 58160787 58160787 T C CYP27B1 Missense_Mutation p.H13R 0.15 tolerated_low_confidence(0.22) benign(0.051) TCGA-55-7281-01 12 6182846 6182846 G T VWF Nonsense_Mutation p.C312* 0.14 TCGA-55-7281-01 12 64519823 64519823 T G SRGAP1 Missense_Mutation p.F764C 0.17 deleterious(0) probably_damaging(0.992) TCGA-55-7281-01 12 6933684 6933684 G T GPR162 Missense_Mutation p.W207L 0.15 tolerated(0.6) benign(0.33) TCGA-55-7281-01 12 76444406 76444406 C G NAP1L1 Missense_Mutation p.A322P 0.41 deleterious(0.05) benign(0.159) TCGA-55-7281-01 13 101736089 101736089 G C NALCN Missense_Mutation p.Q1186E 0.24 deleterious(0) benign(0.405) TCGA-55-7281-01 13 101890140 101890140 G A NALCN Missense_Mutation p.P467L 0.06 deleterious(0.02) probably_damaging(0.968) TCGA-55-7281-01 13 103527858 103527858 C T ERCC5 Nonsense_Mutation p.Q1056* 0.18 TCGA-55-7281-01 13 113768231 113768231 C T F7 Silent p.I129I 0.05 TCGA-55-7281-01 13 113887578 113887578 C T CUL4A Silent p.I200I 0.09 TCGA-55-7281-01 13 114748770 114748770 A T RASA3 Silent p.T831T 0.31 TCGA-55-7281-01 13 114780772 114780772 C T RASA3 Missense_Mutation p.A440T 0.10 tolerated(0.29) benign(0.354) TCGA-55-7281-01 13 23913373 23913373 C A SACS Nonsense_Mutation p.G1548* 0.25 TCGA-55-7281-01 13 34404941 34404941 G T RFC3 Missense_Mutation p.C220F 0.16 deleterious(0.02) benign(0.007) TCGA-55-7281-01 13 36410270 36410270 C T DCLK1 Missense_Mutation p.E377K 0.26 tolerated(0.68) possibly_damaging(0.486) TCGA-55-7281-01 13 36909680 36909680 C A SPG20 Missense_Mutation p.E96D 0.24 tolerated(0.1) benign(0.027) TCGA-55-7281-01 13 38320488 38320488 C A TRPC4 Missense_Mutation p.L161F 0.25 tolerated(0.07) probably_damaging(1) TCGA-55-7281-01 13 40233511 40233511 A T COG6 Missense_Mutation p.E55V 0.18 deleterious(0) probably_damaging(0.998) TCGA-55-7281-01 13 40261879 40261879 G T COG6 Missense_Mutation p.A318S 0.33 tolerated(0.18) benign(0.364) TCGA-55-7281-01 13 46716508 46716508 G A LCP1 Missense_Mutation p.S474F 0.31 deleterious(0) possibly_damaging(0.698) TCGA-55-7281-01 13 50034254 50034254 A G SETDB2 Missense_Mutation p.T10A 0.31 tolerated(0.19) benign(0.016) TCGA-55-7281-01 13 52544664 52544664 C A ATP7B Missense_Mutation p.V503L 0.19 deleterious(0) benign(0.327) TCGA-55-7281-01 13 73649905 73649905 G A KLF5 Missense_Mutation p.E419K 0.20 deleterious(0) probably_damaging(0.982) TCGA-55-7281-01 13 99549811 99549811 G A DOCK9 Missense_Mutation p.A547V 0.22 tolerated(0.08) possibly_damaging(0.492) TCGA-55-7281-01 14 106066439 106066439 G T IGHE Silent p.T417T 0.31 TCGA-55-7281-01 14 106641844 106641844 C A IGHV1-18 Missense_Mutation p.V24L 0.39 tolerated(0.13) benign(0.076) TCGA-55-7281-01 14 107035126 107035126 C G IGHV5-51 Missense_Mutation p.V13L 0.44 tolerated(0.44) probably_damaging(0.971) TCGA-55-7281-01 14 20586569 20586569 C A OR4K17 Missense_Mutation p.A335D 0.43 deleterious(0.02) benign(0.098) TCGA-55-7281-01 14 23869595 23869595 T A MYH6 Missense_Mutation p.E484V 0.39 deleterious(0) probably_damaging(0.945) TCGA-55-7281-01 14 50280705 50280705 C A NEMF Splice_Site p.X582_splice 0.41 TCGA-55-7281-01 14 64463791 64463791 G A SYNE2 Missense_Mutation p.E1023K 0.17 benign(0.133) TCGA-55-7281-01 14 65239306 65239306 C A SPTB Missense_Mutation p.G1849C 0.52 tolerated(0.08) possibly_damaging(0.807) TCGA-55-7281-01 14 74726376 74726376 G T VSX2 Silent p.A217A 0.35 TCGA-55-7281-01 14 75022254 75022254 C G LTBP2 Missense_Mutation p.D325H 0.39 tolerated(0.29) benign(0.033) TCGA-55-7281-01 14 91739806 91739806 G T CCDC88C Nonsense_Mutation p.Y1750* 0.45 TCGA-55-7281-01 14 94756459 94756459 G T SERPINA10 Missense_Mutation p.L158M 0.41 deleterious(0.01) probably_damaging(0.994) TCGA-55-7281-01 15 23811369 23811369 C A MKRN3 Missense_Mutation p.A147E 0.18 tolerated(1) benign(0.014) TCGA-55-7281-01 15 23890121 23890121 C A MAGEL2 Missense_Mutation p.E320D 0.14 tolerated(0.08) benign(0.017) TCGA-55-7281-01 15 28420692 28420692 G A HERC2 Missense_Mutation p.A3266V 0.28 possibly_damaging(0.886) TCGA-55-7281-01 15 28437249 28437249 C A HERC2 Missense_Mutation p.C2770F 0.18 benign(0.001) TCGA-55-7281-01 15 28508211 28508211 C G HERC2 Missense_Mutation p.V659L 0.18 benign(0.016) TCGA-55-7281-01 15 31362303 31362303 G A TRPM1 Silent p.T87T 0.23 TCGA-55-7281-01 15 35174838 35174838 T A AQR Missense_Mutation p.E1010D 0.20 deleterious(0) possibly_damaging(0.791) TCGA-55-7281-01 15 40269028 40269028 C G EIF2AK4 Silent p.V744V 0.12 TCGA-55-7281-01 15 42143102 42143102 G T SPTBN5 Missense_Mutation p.P3624Q 0.40 possibly_damaging(0.638) TCGA-55-7281-01 15 42850469 42850469 T G HAUS2 Missense_Mutation p.I56S 0.29 deleterious(0) possibly_damaging(0.474) TCGA-55-7281-01 15 43568737 43568737 C A TGM7 Missense_Mutation p.Q683H 0.23 deleterious(0) probably_damaging(0.999) TCGA-55-7281-01 15 48936976 48936976 C A FBN1 5'UTR 0.26 TCGA-55-7281-01 15 50886737 50886737 A T TRPM7 Missense_Mutation p.Y1122N 0.17 deleterious(0) probably_damaging(0.929) TCGA-55-7281-01 15 51250970 51250970 C T AP4E1 Silent p.D610D 0.18 TCGA-55-7281-01 15 60760341 60760341 C A NARG2 Silent p.V109V 0.23 TCGA-55-7281-01 15 63978575 63978575 C A HERC1 Missense_Mutation p.G2070W 0.12 probably_damaging(1) TCGA-55-7281-01 15 64966165 64966165 G T ZNF609 Missense_Mutation p.R371I 0.14 deleterious(0) probably_damaging(0.999) TCGA-55-7281-01 15 79059831 79059831 T A ADAMTS7 Missense_Mutation p.S917C 0.38 deleterious(0) possibly_damaging(0.566) TCGA-55-7281-01 15 86807859 86807859 C A AGBL1 Missense_Mutation p.T440N 0.17 tolerated(0.34) benign(0.007) TCGA-55-7281-01 15 92459340 92459340 G T SLCO3A1 Missense_Mutation p.G100W 0.21 deleterious(0) probably_damaging(1) TCGA-55-7281-01 15 99251273 99251273 G A IGF1R Missense_Mutation p.E193K 0.08 tolerated(0.86) benign(0.015) TCGA-55-7281-01 16 11118744 11118744 G C CLEC16A Silent p.V501V 0.47 TCGA-55-7281-01 16 17211743 17211743 C A XYLT1 Missense_Mutation p.G773W 0.26 deleterious(0) probably_damaging(0.991) TCGA-55-7281-01 16 20335250 20335250 C A GP2 Missense_Mutation p.W141C 0.24 deleterious(0) probably_damaging(0.999) TCGA-55-7281-01 16 21033313 21033313 C A DNAH3 Missense_Mutation p.R1919I 0.32 deleterious(0.02) benign(0.379) TCGA-55-7281-01 16 24801933 24801933 A T TNRC6A Missense_Mutation p.N657I 0.42 tolerated(0.17) benign(0.003) TCGA-55-7281-01 16 27460293 27460293 C A IL21R Missense_Mutation p.P436T 0.31 tolerated(0.14) possibly_damaging(0.687) TCGA-55-7281-01 16 28328794 28328794 G T SBK1 Missense_Mutation p.G28C 0.26 deleterious_low_confidence(0.01) probably_damaging(0.956) TCGA-55-7281-01 16 28854288 28854288 C T TUFM 3'UTR 0.23 TCGA-55-7281-01 16 3274184 3274184 T A ZNF200 Missense_Mutation p.E299V 0.24 deleterious(0.01) probably_damaging(0.977) TCGA-55-7281-01 16 335128 335128 C G PDIA2 Silent p.G241G 0.25 TCGA-55-7281-01 16 3406235 3406235 A G OR2C1 Missense_Mutation p.T99A 0.10 tolerated(0.84) benign(0.123) TCGA-55-7281-01 16 56545071 56545071 C G BBS2 Silent p.T157T 0.38 TCGA-55-7281-01 16 67969891 67969891 G T PSMB10 Missense_Mutation p.R120S 0.49 tolerated(0.36) possibly_damaging(0.449) TCGA-55-7281-01 16 70986483 70986483 G T HYDIN Missense_Mutation p.D2124E 0.25 benign(0.001) TCGA-55-7281-01 16 717629 717629 C G WDR90 3'UTR 0.23 TCGA-55-7281-01 16 7703849 7703849 G T RBFOX1 Missense_Mutation p.A284S 0.22 deleterious(0.02) possibly_damaging(0.808) TCGA-55-7281-01 16 9857957 9857957 C T GRIN2A Silent p.P1148P 0.28 TCGA-55-7281-01 17 12844441 12844441 G T ARHGAP44 Silent p.T217T 0.40 TCGA-55-7281-01 17 1554421 1554421 C A PRPF8 Silent p.S2278S 0.39 TCGA-55-7281-01 17 17117142 17117142 T A FLCN Nonsense_Mutation p.K523* 0.26 TCGA-55-7281-01 17 21731494 21731494 C A UBBP4 Missense_Mutation p.P190H 0.26 deleterious(0.02) probably_damaging(0.986) TCGA-55-7281-01 17 26109099 26109099 C T NOS2 Missense_Mutation p.E222K 0.20 tolerated(0.3) probably_damaging(0.984) TCGA-55-7281-01 17 26890891 26890891 G T PIGS Silent p.A107A 0.26 TCGA-55-7281-01 17 30348293 30348293 G T LRRC37B Missense_Mutation p.G43V 0.17 tolerated(0.12) probably_damaging(0.981) TCGA-55-7281-01 17 39183195 39183195 G A KRTAP1-5 Silent p.C71C 0.24 TCGA-55-7281-01 17 39535834 39535834 C G KRT34 Missense_Mutation p.W288C 0.11 deleterious(0) probably_damaging(1) TCGA-55-7281-01 17 40858171 40858171 T C EZH1 Missense_Mutation p.T565A 0.05 tolerated(1) probably_damaging(0.97) TCGA-55-7281-01 17 41209101 41209101 G A BRCA1 Missense_Mutation p.P1770S 0.14 deleterious(0) benign(0.204) TCGA-55-7281-01 17 42328949 42328949 G C SLC4A1 Silent p.S773S 0.23 TCGA-55-7281-01 17 42462399 42462399 C - ITGA2B Frame_Shift_Del p.R239Pfs*140 0.22 TCGA-55-7281-01 17 46627892 46627892 C A HOXB3 Missense_Mutation p.G367V 0.34 deleterious(0) probably_damaging(1) TCGA-55-7281-01 17 48628411 48628411 T C SPATA20 Missense_Mutation p.L479P 0.22 tolerated(0.27) benign(0.019) TCGA-55-7281-01 17 51902457 51902457 G C KIF2B 3'UTR 0.21 TCGA-55-7281-01 17 55183651 55183651 C G AKAP1 Missense_Mutation p.H276D 0.18 tolerated(0.58) benign(0.102) TCGA-55-7281-01 17 56665328 56665328 A T TEX14 Missense_Mutation p.S883R 0.16 tolerated(0.17) benign(0.007) TCGA-55-7281-01 17 59556073 59556073 C A TBX4 Missense_Mutation p.T212N 0.18 deleterious(0.04) benign(0.009) TCGA-55-7281-01 17 59938841 59938841 T C BRIP1 Silent p.K20K 0.29 TCGA-55-7281-01 17 67108373 67108373 C T ABCA6 Missense_Mutation p.G695S 0.21 deleterious(0) probably_damaging(1) TCGA-55-7281-01 17 72347009 72347009 C A AC103809.2 Missense_Mutation p.R101M 0.30 possibly_damaging(0.711) TCGA-55-7281-01 17 72368049 72368049 G T GPR142 Silent p.T233T 0.22 TCGA-55-7281-01 17 72436962 72436963 TG C GPRC5C Frame_Shift_Del p.A395Qfs*17 0.17 TCGA-55-7281-01 17 72860303 72860303 T A FDXR Silent p.A366A 0.13 TCGA-55-7281-01 17 79514713 79514713 G A C17orf70 Intron 0.28 TCGA-55-7281-01 18 24039787 24039787 T - KCTD1 Frame_Shift_Del p.R138Gfs*20 0.33 TCGA-55-7281-01 18 34385371 34385371 G A TPGS2 Silent p.P116P 0.38 TCGA-55-7281-01 18 346601 346601 T A COLEC12 Missense_Mutation p.T341S 0.44 tolerated(0.76) benign(0.019) TCGA-55-7281-01 18 40503615 40503615 G A RIT2 Silent p.L116L 0.41 TCGA-55-7281-01 18 42531648 42531648 A G SETBP1 Silent p.T781T 0.54 TCGA-55-7281-01 18 44260100 44260100 C A ST8SIA5 Missense_Mutation p.G346C 0.38 probably_damaging(1) TCGA-55-7281-01 18 44559770 44559770 C T TCEB3B Missense_Mutation p.M622I 0.41 deleterious(0.01) benign(0.006) TCGA-55-7281-01 18 74091609 74091609 C G ZNF516 Missense_Mutation p.A821P 0.33 deleterious(0.04) probably_damaging(0.912) TCGA-55-7281-01 19 10823446 10823446 G C QTRT1 Missense_Mutation p.A292P 0.21 deleterious(0) probably_damaging(0.999) TCGA-55-7281-01 19 14938756 14938756 G T OR7A5 Missense_Mutation p.Q100K 0.17 deleterious_low_confidence(0) possibly_damaging(0.564) TCGA-55-7281-01 19 15533860 15533860 C T WIZ 3'UTR 0.38 TCGA-55-7281-01 19 16861059 16861059 C A NWD1 Missense_Mutation p.L536M 0.18 deleterious(0.05) probably_damaging(0.998) TCGA-55-7281-01 19 16874727 16874727 G T NWD1 Missense_Mutation p.R741L 0.39 tolerated(0.21) benign(0.014) TCGA-55-7281-01 19 17311621 17311621 G T MYO9B Nonsense_Mutation p.E1516* 0.13 TCGA-55-7281-01 19 17452369 17452369 G T GTPBP3 Missense_Mutation p.G478C 0.22 deleterious(0.03) possibly_damaging(0.772) TCGA-55-7281-01 19 22817255 22817255 A T ZNF492 5'UTR 0.34 TCGA-55-7281-01 19 22952090 22952090 C G ZNF99 Missense_Mutation p.A14P 0.32 deleterious(0.01) benign(0.152) TCGA-55-7281-01 19 30477230 30477230 C T URI1 Silent p.V91V 0.17 TCGA-55-7281-01 19 34859521 34859521 C T GPI Missense_Mutation p.R145W 0.08 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-55-7281-01 19 36884554 36884554 C A ZFP82 Nonsense_Mutation p.E230* 0.15 TCGA-55-7281-01 19 41105444 41105444 T A LTBP4 Missense_Mutation p.L108H 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-7281-01 19 42461024 42461024 C - RABAC1 Frame_Shift_Del p.E178Rfs*? 0.23 TCGA-55-7281-01 19 42822023 42822023 T A TMEM145 Missense_Mutation p.Y355N 0.31 tolerated(0.37) probably_damaging(0.98) TCGA-55-7281-01 19 45322968 45322968 G T BCAM Missense_Mutation p.R583L 0.36 tolerated(0.24) benign(0.062) TCGA-55-7281-01 19 45540760 45540760 C G RELB Silent p.L484L 0.08 TCGA-55-7281-01 19 46289893 46289893 G C DMWD Silent p.L287L 0.10 TCGA-55-7281-01 19 50545052 50545052 G A ZNF473 Missense_Mutation p.G68R 0.13 tolerated(0.16) possibly_damaging(0.697) TCGA-55-7281-01 19 52447603 52447603 G T ZNF613 Missense_Mutation p.G156V 0.16 deleterious(0.02) benign(0.04) TCGA-55-7281-01 19 54721011 54721011 C T LILRB3 Missense_Mutation p.G617E 0.14 tolerated(0.5) possibly_damaging(0.856) TCGA-55-7281-01 19 54849379 54849379 C G LILRA4 Missense_Mutation p.R161S 0.47 tolerated(0.11) benign(0.193) TCGA-55-7281-01 19 5745958 5745958 G T CATSPERD Missense_Mutation p.R231L 0.37 deleterious(0.04) benign(0.286) TCGA-55-7281-01 19 57716786 57716786 A T ZNF264 Missense_Mutation p.E61V 0.24 deleterious(0.02) benign(0.102) TCGA-55-7281-01 19 57744036 57744036 G C AURKC Missense_Mutation p.Q141H 0.13 deleterious(0.04) possibly_damaging(0.773) TCGA-55-7281-01 19 9014562 9014562 T A MUC16 Missense_Mutation p.T12805S 0.41 benign(0.334) TCGA-55-7281-01 19 9084596 9084596 G T MUC16 Missense_Mutation p.L2407I 0.47 unknown(0) TCGA-55-7281-01 19 9269521 9269521 A T ZNF317 Missense_Mutation p.K135N 0.13 tolerated(0.12) benign(0.002) TCGA-55-7281-01 1 101196902 101196903 - T VCAM1 Frame_Shift_Ins p.L453Ffs*23 0.11 TCGA-55-7281-01 1 109377596 109377596 G - AKNAD1 Frame_Shift_Del p.P540Rfs*18 0.21 TCGA-55-7281-01 1 110294720 110294720 G C EPS8L3 Missense_Mutation p.S445C 0.13 tolerated(0.17) possibly_damaging(0.779) TCGA-55-7281-01 1 115220608 115220608 C A AMPD1 Nonsense_Mutation p.G416* 0.29 TCGA-55-7281-01 1 115829133 115829133 C A NGF Missense_Mutation p.R95L 0.29 tolerated(0.46) benign(0) TCGA-55-7281-01 1 1290644 1290644 C A MXRA8 Missense_Mutation p.R153L 0.28 tolerated(0.11) benign(0.038) TCGA-55-7281-01 1 13669340 13669340 C A PRAMEF14 Silent p.V330V 0.28 TCGA-55-7281-01 1 149877572 149877572 G A SV2A Silent p.S635S 0.19 TCGA-55-7281-01 1 152648889 152648889 C T LCE2C 3'UTR 0.14 TCGA-55-7281-01 1 152733235 152733235 T C KPRP Missense_Mutation p.C391R 0.26 tolerated_low_confidence(0.08) benign(0.001) TCGA-55-7281-01 1 152957747 152957747 C A SPRR1A Missense_Mutation p.P14H 0.27 deleterious(0.02) unknown(0) TCGA-55-7281-01 1 156374326 156374326 C T C1orf61 3'UTR 0.13 TCGA-55-7281-01 1 156507066 156507066 T A IQGAP3 Missense_Mutation p.E1110V 0.35 deleterious(0) probably_damaging(0.981) TCGA-55-7281-01 1 158669868 158669868 C A OR6K2 Missense_Mutation p.R192L 0.27 tolerated(0.09) benign(0.115) TCGA-55-7281-01 1 160111106 160111106 C A ATP1A2 Nonsense_Mutation p.Y1019* 0.18 TCGA-55-7281-01 1 16725938 16725938 C A SPATA21 Missense_Mutation p.R418M 0.22 deleterious(0) probably_damaging(0.99) TCGA-55-7281-01 1 16945713 16945713 C A RP5-1182A14.5 3'Flank 0.12 TCGA-55-7281-01 1 170521193 170521193 G T GORAB Missense_Mutation p.A259S 0.28 deleterious(0.03) probably_damaging(0.961) TCGA-55-7281-01 1 175332844 175332844 C A TNR Missense_Mutation p.V903L 0.27 tolerated(0.1) possibly_damaging(0.554) TCGA-55-7281-01 1 175372666 175372666 C G TNR Missense_Mutation p.G196R 0.13 deleterious(0) probably_damaging(1) TCGA-55-7281-01 1 181764028 181764028 G T CACNA1E Missense_Mutation p.R2019L 0.25 deleterious(0) possibly_damaging(0.63) TCGA-55-7281-01 1 198703530 198703530 C A PTPRC Silent p.V751V 0.30 TCGA-55-7281-01 1 200843050 200843050 G T GPR25 Silent p.L295L 0.33 TCGA-55-7281-01 1 200961498 200961498 A T KIF21B Missense_Mutation p.M766K 0.22 deleterious(0) possibly_damaging(0.621) TCGA-55-7281-01 1 201294192 201294192 A T PKP1 Missense_Mutation p.Q674L 0.19 tolerated(0.14) benign(0.075) TCGA-55-7281-01 1 204924039 204924039 G T NFASC Silent p.P165P 0.18 TCGA-55-7281-01 1 206972237 206972237 A G IL19 5'UTR 0.20 TCGA-55-7281-01 1 208061058 208061058 C G CD34 3'UTR 0.29 TCGA-55-7281-01 1 209907873 209907873 C A HSD11B1 3'UTR 0.24 TCGA-55-7281-01 1 23695808 23695808 C G C1orf213 Silent p.V6V 0.08 TCGA-55-7281-01 1 237982471 237982471 A G RYR2 Missense_Mutation p.I4857V 0.24 benign(0.394) TCGA-55-7281-01 1 24078311 24078311 T A TCEB3 Missense_Mutation p.S432T 0.11 deleterious(0.01) possibly_damaging(0.493) TCGA-55-7281-01 1 241729848 241729848 A T KMO Missense_Mutation p.T249S 0.24 tolerated(0.13) benign(0.364) TCGA-55-7281-01 1 247588839 247588839 C A NLRP3 Silent p.G698G 0.19 TCGA-55-7281-01 1 247654603 247654603 C A OR2W5 RNA 0.24 TCGA-55-7281-01 1 248059225 248059225 C A OR2W3 Missense_Mutation p.L113M 0.22 deleterious(0.02) possibly_damaging(0.873) TCGA-55-7281-01 1 248308855 248308855 A T OR2M5 Missense_Mutation p.M136L 0.16 deleterious(0.02) benign(0.153) TCGA-55-7281-01 1 27124409 27124409 G T PIGV 3'UTR 0.23 TCGA-55-7281-01 1 32196416 32196416 C A BAI2 Missense_Mutation p.K1455N 0.28 deleterious(0.01) possibly_damaging(0.507) TCGA-55-7281-01 1 34083126 34083126 G T CSMD2 Missense_Mutation p.F1933L 0.17 deleterious(0.01) probably_damaging(0.991) TCGA-55-7281-01 1 35940505 35940505 T C KIAA0319L Missense_Mutation p.I306V 0.08 tolerated(1) benign(0) TCGA-55-7281-01 1 36235530 36235530 G C CLSPN 5'Flank 0.25 TCGA-55-7281-01 1 3751513 3751513 T A CEP104 Missense_Mutation p.R487S 0.40 deleterious(0.02) probably_damaging(0.956) TCGA-55-7281-01 1 38019898 38019898 T A SNIP1 5'UTR 0.18 TCGA-55-7281-01 1 38078308 38078308 A T RSPO1 3'UTR 0.37 TCGA-55-7281-01 1 43805148 43805148 C A MPL Missense_Mutation p.P200T 0.29 tolerated(0.23) benign(0.013) TCGA-55-7281-01 1 49224778 49224778 C A BEND5 Missense_Mutation p.R180L 0.33 tolerated(0.09) probably_damaging(0.982) TCGA-55-7281-01 1 49224782 49224782 G C BEND5 Missense_Mutation p.P179A 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-55-7281-01 1 52489195 52489195 C A TXNDC12 Missense_Mutation p.S136I 0.34 deleterious(0.02) benign(0.283) TCGA-55-7281-01 1 65047888 65047888 A G CACHD1 Missense_Mutation p.N53S 0.20 tolerated(0.22) benign(0.011) TCGA-55-7281-01 1 67195021 67195021 C A SGIP1 Missense_Mutation p.P606Q 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-55-7281-01 1 78546513 78546513 C A GIPC2 Missense_Mutation p.T132K 0.28 deleterious(0) probably_damaging(0.981) TCGA-55-7281-01 1 92441925 92441925 A G BRDT Missense_Mutation p.K183R 0.29 tolerated(0.17) benign(0.201) TCGA-55-7281-01 20 1559157 1559157 G T RP4-576H24.4 Missense_Mutation p.P86Q 0.50 deleterious(0) probably_damaging(0.985) TCGA-55-7281-01 20 23545506 23545506 G T CST9L 3'UTR 0.37 TCGA-55-7281-01 20 2381054 2381054 G T TGM6 Missense_Mutation p.G318V 0.43 deleterious(0) probably_damaging(1) TCGA-55-7281-01 20 2637485 2637485 G C NOP56 Missense_Mutation p.E409Q 0.19 deleterious(0.01) probably_damaging(0.917) TCGA-55-7281-01 20 30155996 30155996 C T HM13 Missense_Mutation p.R384C 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.533) TCGA-55-7281-01 20 43851084 43851084 A G SEMG2 Missense_Mutation p.K271E 0.54 tolerated(0.14) probably_damaging(0.991) TCGA-55-7281-01 21 30934017 30934017 G T GRIK1 Missense_Mutation p.Q762K 0.16 deleterious(0.01) benign(0.26) TCGA-55-7281-01 21 31709587 31709587 C A KRTAP27-1 Missense_Mutation p.A134S 0.19 tolerated(0.41) benign(0.051) TCGA-55-7281-01 21 31812784 31812784 C A KRTAP15-1 Missense_Mutation p.L47I 0.33 tolerated(0.06) benign(0.056) TCGA-55-7281-01 21 31852534 31852534 G T KRTAP19-1 Silent p.R35R 0.25 TCGA-55-7281-01 21 32638519 32638519 C G TIAM1 Missense_Mutation p.C257S 0.34 tolerated(0.41) benign(0.109) TCGA-55-7281-01 21 34660564 34660564 G C IL10RB Missense_Mutation p.E268Q 0.21 deleterious(0) probably_damaging(0.927) TCGA-55-7281-01 21 41032852 41032852 G T B3GALT5 Missense_Mutation p.K122N 0.22 deleterious(0) probably_damaging(0.978) TCGA-55-7281-01 21 46896376 46896376 A T COL18A1 Missense_Mutation p.T484S 0.44 unknown(0) TCGA-55-7281-01 21 46901927 46901927 G A COL18A1 Silent p.Q734Q 0.19 TCGA-55-7281-01 21 46930146 46930146 C A COL18A1 Missense_Mutation p.R1402S 0.42 probably_damaging(0.93) TCGA-55-7281-01 21 47422543 47422543 G T COL6A1 Missense_Mutation p.G785C 0.28 deleterious(0) probably_damaging(0.998) TCGA-55-7281-01 21 47545884 47545884 C A COL6A2 Silent p.R719R 0.20 TCGA-55-7281-01 22 17684454 17684454 G C CECR1 Missense_Mutation p.P251R 0.19 tolerated(0.17) benign(0.26) TCGA-55-7281-01 22 18301796 18301796 C A MICAL3 Missense_Mutation p.D1211Y 0.22 benign(0.029) TCGA-55-7281-01 22 18384718 18384718 G A MICAL3 Missense_Mutation p.P206L 0.13 probably_damaging(0.999) TCGA-55-7281-01 22 19044598 19044598 G A DGCR2 Nonsense_Mutation p.Q235* 0.31 TCGA-55-7281-01 22 22868938 22868938 G T ZNF280A Nonsense_Mutation p.C339* 0.27 TCGA-55-7281-01 22 26895444 26895444 C T TFIP11 Missense_Mutation p.E319K 0.14 tolerated(0.06) possibly_damaging(0.83) TCGA-55-7281-01 22 32482216 32482216 C T SLC5A1 Missense_Mutation p.A344V 0.23 deleterious(0) possibly_damaging(0.697) TCGA-55-7281-01 22 36689452 36689452 A T MYH9 Missense_Mutation p.S1340T 0.31 benign(0.008) TCGA-55-7281-01 22 37325452 37325452 C G CSF2RB Missense_Mutation p.P134A 0.15 tolerated(0.07) benign(0.385) TCGA-55-7281-01 22 38040682 38040682 G T SH3BP1 Missense_Mutation p.K219N 0.17 deleterious(0.02) probably_damaging(0.995) TCGA-55-7281-01 22 38097357 38097357 G A TRIOBP 5'UTR 0.20 TCGA-55-7281-01 22 40066944 40066944 C T CACNA1I Silent p.H1508H 0.18 TCGA-55-7281-01 22 45929726 45929726 G T FBLN1 Silent p.R244R 0.23 TCGA-55-7281-01 2 100210239 100210239 C T AFF3 Silent p.R653R 0.30 TCGA-55-7281-01 2 108443477 108443477 G A RGPD4 Missense_Mutation p.C3Y 0.33 deleterious(0) benign(0) TCGA-55-7281-01 2 109524389 109524389 G A EDAR Missense_Mutation p.S297F 0.09 deleterious(0.02) benign(0.319) TCGA-55-7281-01 2 121050837 121050837 G T RALB 3'UTR 0.35 TCGA-55-7281-01 2 133543152 133543152 C A NCKAP5 Missense_Mutation p.R411L 0.08 deleterious(0) possibly_damaging(0.712) TCGA-55-7281-01 2 141114000 141114000 T A LRP1B Missense_Mutation p.D3814V 0.29 possibly_damaging(0.804) TCGA-55-7281-01 2 141641553 141641553 C A LRP1B Silent p.L1334L 0.24 TCGA-55-7281-01 2 141660631 141660631 G T LRP1B Missense_Mutation p.D1208E 0.21 benign(0.417) TCGA-55-7281-01 2 143913188 143913188 C A ARHGAP15 Silent p.S43S 0.36 TCGA-55-7281-01 2 166019212 166019212 C T SCN3A Missense_Mutation p.R274K 0.28 tolerated(0.34) benign(0) TCGA-55-7281-01 2 166797562 166797562 C A TTC21B Missense_Mutation p.D229Y 0.23 deleterious(0) probably_damaging(0.928) TCGA-55-7281-01 2 168103850 168103850 C T XIRP2 Missense_Mutation p.P1983L 0.41 possibly_damaging(0.804) TCGA-55-7281-01 2 169996113 169996113 T C LRP2 Missense_Mutation p.S4403G 0.19 benign(0.002) TCGA-55-7281-01 2 176964687 176964689 CCA - HOXD12 In_Frame_Del p.T54del 0.31 TCGA-55-7281-01 2 179396333 179396333 G T TTN Missense_Mutation p.D35003E 0.39 TCGA-55-7281-01 2 179435842 179435842 G A TTN Missense_Mutation p.P25006L 0.04 TCGA-55-7281-01 2 179576905 179576905 C A TTN Missense_Mutation p.V9218F 0.23 TCGA-55-7281-01 2 182358123 182358123 G A ITGA4 Missense_Mutation p.G409R 0.33 deleterious(0) probably_damaging(1) TCGA-55-7281-01 2 182413579 182413579 C G CERKL Missense_Mutation p.V327L 0.25 tolerated(0.55) benign(0.006) TCGA-55-7281-01 2 185801049 185801049 C A ZNF804A Missense_Mutation p.P309H 0.23 tolerated(0.05) probably_damaging(0.997) TCGA-55-7281-01 2 191233942 191233942 G T INPP1 Missense_Mutation p.G194W 0.30 deleterious(0) probably_damaging(1) TCGA-55-7281-01 2 196729424 196729424 C A DNAH7 Missense_Mutation p.A2319S 0.22 deleterious(0) probably_damaging(0.999) TCGA-55-7281-01 2 196801370 196801370 G A DNAH7 Silent p.S1075S 0.25 TCGA-55-7281-01 2 202611466 202611466 G A ALS2 Silent p.S607S 0.15 TCGA-55-7281-01 2 220477903 220477903 G T STK11IP Silent p.V842V 0.16 TCGA-55-7281-01 2 236403353 236403353 C A AGAP1 Missense_Mutation p.A8D 0.25 deleterious(0) probably_damaging(0.987) TCGA-55-7281-01 2 238725983 238725983 G A RBM44 Missense_Mutation p.E142K 0.47 tolerated(0.26) benign(0.027) TCGA-55-7281-01 2 238726838 238726838 G T RBM44 Missense_Mutation p.D427Y 0.42 deleterious(0.01) benign(0.407) TCGA-55-7281-01 2 238742712 238742712 C A RBM44 Missense_Mutation p.P988T 0.42 deleterious(0) probably_damaging(0.959) TCGA-55-7281-01 2 239016463 239016463 G T ESPNL Missense_Mutation p.R235L 0.36 deleterious(0.01) probably_damaging(0.927) TCGA-55-7281-01 2 239016588 239016588 G C ESPNL Missense_Mutation p.D277H 0.29 deleterious(0) probably_damaging(1) TCGA-55-7281-01 2 239161729 239161729 G T PER2 Missense_Mutation p.P979T 0.33 deleterious(0.02) possibly_damaging(0.804) TCGA-55-7281-01 2 36744655 36744655 A T CRIM1 Missense_Mutation p.T726S 0.23 tolerated(0.23) probably_damaging(0.991) TCGA-55-7281-01 2 48573727 48573727 T C FOXN2 Missense_Mutation p.I125T 0.04 deleterious(0) probably_damaging(0.999) TCGA-55-7281-01 2 49190511 49190511 G C FSHR Silent p.L483L 0.24 TCGA-55-7281-01 2 60987422 60987422 G C PAPOLG Missense_Mutation p.L57F 0.08 deleterious(0) possibly_damaging(0.622) TCGA-55-7281-01 2 72742214 72742214 C T EXOC6B Silent p.R319R 0.17 TCGA-55-7281-01 2 74040627 74040627 C T C2orf78 Missense_Mutation p.P41S 0.23 deleterious(0.03) benign(0.344) TCGA-55-7281-01 2 74041004 74041004 T A C2orf78 Nonsense_Mutation p.Y166* 0.37 TCGA-55-7281-01 2 74751353 74751353 C A DQX1 Missense_Mutation p.E171D 0.13 tolerated(0.35) probably_damaging(0.997) TCGA-55-7281-01 2 86371740 86371740 C T IMMT Missense_Mutation p.R643Q 0.05 deleterious(0.03) benign(0.133) TCGA-55-7281-01 2 96789754 96789754 A G ASTL Silent p.G377G 0.16 TCGA-55-7281-01 3 100170692 100170692 G A LNP1 Missense_Mutation p.E96K 0.19 tolerated(0.05) possibly_damaging(0.713) TCGA-55-7281-01 3 101571804 101571804 A G NFKBIZ Missense_Mutation p.R179G 0.16 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-55-7281-01 3 10980044 10980044 G C SLC6A11 Missense_Mutation p.D619H 0.04 tolerated(0.08) probably_damaging(0.998) TCGA-55-7281-01 3 111785291 111785291 C A TMPRSS7 Silent p.L410L 0.22 TCGA-55-7281-01 3 119886566 119886566 C A GPR156 Missense_Mutation p.M586I 0.17 tolerated(0.52) benign(0.001) TCGA-55-7281-01 3 122631876 122631876 T G SEMA5B Missense_Mutation p.T901P 0.29 tolerated(0.22) benign(0.012) TCGA-55-7281-01 3 134670615 134670615 G T EPHB1 Missense_Mutation p.A176S 0.15 deleterious(0.01) probably_damaging(0.917) TCGA-55-7281-01 3 140692765 140692765 G T SLC25A36 Silent p.V220V 0.39 TCGA-55-7281-01 3 14220052 14220052 G A XPC Missense_Mutation p.A6V 0.16 deleterious_low_confidence(0.02) benign(0.357) TCGA-55-7281-01 3 142681404 142681404 G A PAQR9 Missense_Mutation p.L259F 0.28 tolerated(0.49) possibly_damaging(0.822) TCGA-55-7281-01 3 148789207 148789207 T A HLTF Silent p.P242P 0.39 TCGA-55-7281-01 3 151101949 151101949 C A MED12L Silent p.S1588S 0.39 TCGA-55-7281-01 3 160239566 160239566 C T KPNA4 Splice_Site p.X301_splice 0.08 TCGA-55-7281-01 3 165547481 165547481 G T BCHE Nonsense_Mutation p.Y447* 0.25 TCGA-55-7281-01 3 183217574 183217574 C A KLHL6 Missense_Mutation p.Q317H 0.32 tolerated(0.28) possibly_damaging(0.804) TCGA-55-7281-01 3 185200392 185200392 A C MAP3K13 3'UTR 0.45 TCGA-55-7281-01 3 186358347 186358347 C T FETUB Missense_Mutation p.S33F 0.33 tolerated(0.07) probably_damaging(0.937) TCGA-55-7281-01 3 187419951 187419951 C A RTP2 5'UTR 0.34 TCGA-55-7281-01 3 193176992 193176992 C A ATP13A4 Missense_Mutation p.G518C 0.15 deleterious(0) probably_damaging(0.985) TCGA-55-7281-01 3 2787225 2787225 G T CNTN4 Missense_Mutation p.D68Y 0.16 tolerated(0.22) benign(0.036) TCGA-55-7281-01 3 30713590 30713590 C T TGFBR2 Silent p.L330L 0.23 TCGA-55-7281-01 3 37536029 37536029 C T ITGA9 Silent p.C194C 0.29 TCGA-55-7281-01 3 37536030 37536030 C T ITGA9 Nonsense_Mutation p.Q195* 0.28 TCGA-55-7281-01 3 38347960 38347960 G T SLC22A14 Missense_Mutation p.G148V 0.25 deleterious(0) probably_damaging(0.998) TCGA-55-7281-01 3 38598729 38598729 G A SCN5A Missense_Mutation p.S1431F 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-7281-01 3 38645303 38645303 C G SCN5A Missense_Mutation p.C597S 0.18 tolerated(0.09) probably_damaging(0.996) TCGA-55-7281-01 3 46899892 46899892 C T MYL3 Missense_Mutation p.G181S 0.18 deleterious(0.03) possibly_damaging(0.746) TCGA-55-7281-01 3 47454594 47454594 C A PTPN23 Missense_Mutation p.N1610K 0.28 unknown(0) TCGA-55-7281-01 3 47454595 47454595 G T PTPN23 Missense_Mutation p.G1611W 0.29 unknown(0) TCGA-55-7281-01 3 52403852 52403852 G T DNAH1 Missense_Mutation p.M1985I 0.33 possibly_damaging(0.512) TCGA-55-7281-01 3 54958689 54958689 G T LRTM1 Missense_Mutation p.H187Q 0.30 tolerated(0.55) benign(0.012) TCGA-55-7281-01 3 61547990 61547990 G T PTPRG Missense_Mutation p.W10L 0.32 tolerated_low_confidence(0.07) benign(0.212) TCGA-55-7281-01 3 78766455 78766455 C A ROBO1 Missense_Mutation p.R296M 0.31 deleterious(0) probably_damaging(0.997) TCGA-55-7281-01 3 87302634 87302634 G A CHMP2B Missense_Mutation p.E169K 0.26 deleterious(0) probably_damaging(0.994) TCGA-55-7281-01 3 96706376 96706376 C T EPHA6 Missense_Mutation p.T218I 0.28 deleterious(0) probably_damaging(0.999) TCGA-55-7281-01 4 100131439 100131439 G T ADH6 Missense_Mutation p.L123M 0.28 deleterious(0.04) probably_damaging(0.98) TCGA-55-7281-01 4 109084820 109084820 G T LEF1 Silent p.P106P 0.21 TCGA-55-7281-01 4 111474593 111474593 G T ENPEP Missense_Mutation p.W875L 0.37 deleterious(0) probably_damaging(0.998) TCGA-55-7281-01 4 114274602 114274602 G T ANK2 Nonsense_Mutation p.E1610* 0.48 TCGA-55-7281-01 4 114279870 114279870 A T ANK2 Missense_Mutation p.T3366S 0.35 benign(0.004) TCGA-55-7281-01 4 114286264 114286264 C A ANK2 Missense_Mutation p.T3653K 0.16 benign(0.444) TCGA-55-7281-01 4 122589682 122589682 C T ANXA5 Missense_Mutation p.G302R 0.09 deleterious(0) benign(0.434) TCGA-55-7281-01 4 122607458 122607458 C A ANXA5 Missense_Mutation p.A27S 0.37 deleterious(0) probably_damaging(1) TCGA-55-7281-01 4 128577843 128577843 G T INTU Missense_Mutation p.E245D 0.31 tolerated(0.13) benign(0.065) TCGA-55-7281-01 4 128626894 128626894 G T INTU Missense_Mutation p.R572L 0.37 deleterious(0.01) benign(0.005) TCGA-55-7281-01 4 148575513 148575513 T A PRMT10 Missense_Mutation p.D512V 0.36 tolerated(0.18) benign(0.101) TCGA-55-7281-01 4 154525336 154525336 G A KIAA0922 Missense_Mutation p.E1058K 0.14 deleterious(0.01) possibly_damaging(0.686) TCGA-55-7281-01 4 156135819 156135819 G - NPY2R Frame_Shift_Del p.W243* 0.26 TCGA-55-7281-01 4 157732074 157732074 C T PDGFC Missense_Mutation p.G137E 0.40 deleterious(0.02) probably_damaging(1) TCGA-55-7281-01 4 164534471 164534471 G A MARCH1 Silent p.I79I 0.10 TCGA-55-7281-01 4 169196580 169196580 C G DDX60 Silent p.L740L 0.28 TCGA-55-7281-01 4 26321388 26321388 A T RBPJ 5'UTR 0.25 TCGA-55-7281-01 4 36069486 36069486 A G ARAP2 3'UTR 0.35 TCGA-55-7281-01 4 53773703 53773703 C T SCFD2 Missense_Mutation p.R588K 0.42 tolerated(0.99) benign(0.003) TCGA-55-7281-01 4 55972944 55972944 A T KDR Nonsense_Mutation p.C482* 0.10 TCGA-55-7281-01 4 56342213 56342213 C A CLOCK Missense_Mutation p.A89S 0.26 deleterious(0.01) probably_damaging(0.984) TCGA-55-7281-01 4 71467241 71467241 C T AMBN Missense_Mutation p.T134I 0.28 deleterious(0.05) benign(0.053) TCGA-55-7281-01 4 77663049 77663049 G T SHROOM3 Missense_Mutation p.R1241S 0.23 deleterious(0) probably_damaging(0.999) TCGA-55-7281-01 4 79455609 79455609 G A FRAS1 Silent p.L3644L 0.07 TCGA-55-7281-01 4 81884847 81884847 C T C4orf22 3'Flank 0.38 TCGA-55-7281-01 4 83552460 83552460 G T SCD5 3'UTR 0.17 TCGA-55-7281-01 4 88766489 88766489 C A MEPE Missense_Mutation p.P157T 0.41 tolerated(0.11) probably_damaging(0.981) TCGA-55-7281-01 4 99358197 99358197 G A RAP1GDS1 Silent p.L559L 0.13 TCGA-55-7281-01 5 11022887 11022887 C A CTNND2 Missense_Mutation p.G998V 0.40 deleterious(0.01) benign(0.266) TCGA-55-7281-01 5 110818622 110818622 G - CAMK4 Frame_Shift_Del p.R324Vfs*7 0.20 TCGA-55-7281-01 5 115298444 115298444 C T AQPEP Missense_Mutation p.P44S 0.43 tolerated(0.96) benign(0.003) TCGA-55-7281-01 5 121188072 121188072 C A FTMT Silent p.G138G 0.47 TCGA-55-7281-01 5 122888800 122888800 G - CSNK1G3 Splice_Site p.X60_splice 0.18 TCGA-55-7281-01 5 130831345 130831345 C T RAPGEF6 Silent p.R476R 0.15 TCGA-55-7281-01 5 134223588 134223588 G T TXNDC15 Missense_Mutation p.D103Y 0.17 deleterious(0) possibly_damaging(0.759) TCGA-55-7281-01 5 13885257 13885257 T A DNAH5 Missense_Mutation p.T942S 0.31 benign(0.002) TCGA-55-7281-01 5 140208796 140208796 G T PCDHA6 Missense_Mutation p.V374L 0.43 tolerated_low_confidence(0.06) probably_damaging(0.924) TCGA-55-7281-01 5 140236734 140236734 C G PCDHA10 Silent p.V367V 0.35 TCGA-55-7281-01 5 140237414 140237414 G T PCDHA10 Missense_Mutation p.R594L 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.838) TCGA-55-7281-01 5 141016394 141016394 C A HDAC3 5'UTR 0.57 TCGA-55-7281-01 5 154394287 154394287 G C KIF4B Missense_Mutation p.D290H 0.40 deleterious(0) probably_damaging(1) TCGA-55-7281-01 5 169145670 169145670 G T DOCK2 Missense_Mutation p.M714I 0.47 tolerated(1) benign(0.015) TCGA-55-7281-01 5 169535566 169535566 G T FOXI1 Missense_Mutation p.S363I 0.45 deleterious(0.02) possibly_damaging(0.634) TCGA-55-7281-01 5 171849423 171849423 G A SH3PXD2B Silent p.L51L 0.27 TCGA-55-7281-01 5 172744832 172744832 G T STC2 3'UTR 0.24 TCGA-55-7281-01 5 178050304 178050304 T C CLK4 Silent p.Q38Q 0.14 TCGA-55-7281-01 5 178557085 178557085 C T ADAMTS2 Missense_Mutation p.E769K 0.31 tolerated(0.24) probably_damaging(0.951) TCGA-55-7281-01 5 21751819 21751819 G C CDH12 3'UTR 0.25 TCGA-55-7281-01 5 23522775 23522775 C A PRDM9 Silent p.P221P 0.25 TCGA-55-7281-01 5 31495408 31495408 C A DROSHA Silent p.P580P 0.34 TCGA-55-7281-01 5 33658333 33658333 C A ADAMTS12 Silent p.S382S 0.26 TCGA-55-7281-01 5 3599534 3599534 G A IRX1 Missense_Mutation p.G158S 0.14 deleterious(0) probably_damaging(0.996) TCGA-55-7281-01 5 40945382 40945382 C T C7 Missense_Mutation p.S217L 0.15 tolerated(0.57) benign(0.022) TCGA-55-7281-01 5 45262862 45262862 C A HCN1 Missense_Mutation p.G612C 0.18 deleterious(0) probably_damaging(1) TCGA-55-7281-01 5 80631600 80631600 C - ACOT12 Frame_Shift_Del p.D417Tfs*10 0.30 TCGA-55-7281-01 5 9122921 9122921 A T SEMA5A Missense_Mutation p.F543Y 0.16 tolerated(0.12) benign(0.004) TCGA-55-7281-01 5 94863776 94863776 C T TTC37 Missense_Mutation p.A359T 0.33 deleterious(0.04) possibly_damaging(0.45) TCGA-55-7281-01 6 100395721 100395721 C - MCHR2 Frame_Shift_Del p.P104Lfs*21 0.26 TCGA-55-7281-01 6 110746269 110746269 G T SLC22A16 Missense_Mutation p.A514D 0.27 deleterious(0) probably_damaging(0.983) TCGA-55-7281-01 6 117232175 117232175 T A RFX6 Silent p.L250L 0.40 TCGA-55-7281-01 6 127837137 127837137 C - SOGA3 Frame_Shift_Del p.G208Afs*166 0.41 TCGA-55-7281-01 6 133827275 133827275 G T EYA4 Missense_Mutation p.R408L 0.09 deleterious(0.03) possibly_damaging(0.68) TCGA-55-7281-01 6 150004837 150004837 T C LATS1 Missense_Mutation p.N463S 0.40 tolerated_low_confidence(0.14) benign(0.026) TCGA-55-7281-01 6 160668324 160668324 T A SLC22A2 Silent p.I283I 0.09 TCGA-55-7281-01 6 167570401 167570401 C G GPR31 Missense_Mutation p.A307P 0.08 tolerated(0.19) benign(0.015) TCGA-55-7281-01 6 28497230 28497230 G T GPX5 Missense_Mutation p.M30I 0.42 tolerated(0.13) benign(0.043) TCGA-55-7281-01 6 31594793 31594793 C - PRRC2A Frame_Shift_Del p.P371Lfs*200 0.17 TCGA-55-7281-01 6 34008522 34008522 C T GRM4 Missense_Mutation p.R391H 0.43 tolerated(0.32) benign(0.016) TCGA-55-7281-01 6 36075254 36075254 G T MAPK14 Missense_Mutation p.M288I 0.40 deleterious(0.01) possibly_damaging(0.713) TCGA-55-7281-01 6 38783335 38783335 G T DNAH8 Missense_Mutation p.G925V 0.39 benign(0.147) TCGA-55-7281-01 6 43025848 43025848 T A MRPL2 Missense_Mutation p.I74F 0.34 tolerated(0.11) benign(0.323) TCGA-55-7281-01 6 44119703 44119703 C G TMEM63B Silent p.L598L 0.12 TCGA-55-7281-01 6 44397514 44397514 C G CDC5L Nonsense_Mutation p.S653* 0.20 TCGA-55-7281-01 6 50786607 50786607 G T TFAP2B Translation_Start_Site p.M1? 0.12 deleterious_low_confidence(0) benign(0.107) TCGA-55-7281-01 6 52657738 52657738 G T GSTA1 Missense_Mutation p.S154R 0.17 deleterious(0) probably_damaging(1) TCGA-55-7281-01 6 52701069 52701069 G T GSTA5 Nonsense_Mutation p.Y79* 0.27 TCGA-55-7281-01 6 56341021 56341021 T C DST Missense_Mutation p.T4641A 0.28 possibly_damaging(0.889) TCGA-55-7281-01 6 66112371 66112371 C G EYS Missense_Mutation p.S395T 0.13 tolerated(0.58) benign(0.034) TCGA-55-7281-01 6 76715160 76715160 A G IMPG1 Missense_Mutation p.S327P 0.05 tolerated(0.05) probably_damaging(0.977) TCGA-55-7281-01 6 7862567 7862567 T G BMP6 Missense_Mutation p.V347G 0.20 deleterious(0) possibly_damaging(0.876) TCGA-55-7281-01 6 84375238 84375238 C T SNAP91 Missense_Mutation p.E65K 0.15 deleterious(0) unknown(0) TCGA-55-7281-01 6 90605647 90605647 C G GJA10 Missense_Mutation p.P487R 0.27 tolerated_low_confidence(0.07) benign(0.019) TCGA-55-7281-01 7 100696667 100696667 G C MUC17 Missense_Mutation p.S4438T 0.62 unknown(0) TCGA-55-7281-01 7 102517935 102517935 A G FBXL13 Silent p.S538S 0.45 TCGA-55-7281-01 7 107423683 107423683 G T SLC26A3 Silent p.S362S 0.45 TCGA-55-7281-01 7 111127317 111127317 G T IMMP2L Missense_Mutation p.H72Q 0.43 tolerated(1) benign(0) TCGA-55-7281-01 7 116166529 116166529 C T CAV1 Intron 0.54 TCGA-55-7281-01 7 134849484 134849484 C A TMEM140 Silent p.A97A 0.20 TCGA-55-7281-01 7 143039216 143039217 - T CLCN1 Frame_Shift_Ins p.G594Wfs*13 0.39 TCGA-55-7281-01 7 149191310 149191310 C T ZNF746 Silent p.K103K 0.50 TCGA-55-7281-01 7 149515769 149515769 C T SSPO RNA 0.25 TCGA-55-7281-01 7 150846032 150846032 C G GBX1 Missense_Mutation p.E246Q 0.16 tolerated(0.1) benign(0.013) TCGA-55-7281-01 7 44156578 44156578 G A POLD2 Silent p.G206G 0.49 TCGA-55-7281-01 7 45956212 45956212 C T IGFBP3 Missense_Mutation p.V235M 0.46 tolerated(0.1) benign(0.166) TCGA-55-7281-01 7 5410791 5410791 C A TNRC18 Missense_Mutation p.R1145L 0.48 benign(0.089) TCGA-55-7281-01 7 66456250 66456250 C G SBDS Missense_Mutation p.K166N 0.12 tolerated(0.05) benign(0.01) TCGA-55-7281-01 7 72744232 72744232 C A FKBP6 Missense_Mutation p.N115K 0.60 tolerated(0.8) benign(0.003) TCGA-55-7281-01 7 97870247 97870247 G A TECPR1 Silent p.I283I 0.69 TCGA-55-7281-01 8 101243392 101243392 A G SPAG1 Missense_Mutation p.T622A 0.28 tolerated(0.78) benign(0.019) TCGA-55-7281-01 8 101661539 101661539 C T SNX31 Missense_Mutation p.R35K 0.19 tolerated(0.81) benign(0.005) TCGA-55-7281-01 8 105025673 105025673 T G RIMS2 Missense_Mutation p.D1016E 0.22 tolerated_low_confidence(1) benign(0.016) TCGA-55-7281-01 8 105361787 105361787 T A DCSTAMP Missense_Mutation p.V336D 0.20 deleterious(0) probably_damaging(0.991) TCGA-55-7281-01 8 105405054 105405054 T A DPYS Silent p.P467P 0.15 TCGA-55-7281-01 8 113418829 113418829 A G CSMD3 Silent p.H1911H 0.10 TCGA-55-7281-01 8 121021282 121021282 G T DEPTOR Silent p.A337A 0.14 TCGA-55-7281-01 8 121021283 121021283 G T DEPTOR Missense_Mutation p.V338F 0.14 deleterious(0.01) probably_damaging(0.973) TCGA-55-7281-01 8 123965171 123965171 A C ZHX2 Missense_Mutation p.E474A 0.09 deleterious(0.01) benign(0.336) TCGA-55-7281-01 8 12879006 12879006 A G KIAA1456 Missense_Mutation p.N273S 0.26 tolerated(0.24) benign(0.017) TCGA-55-7281-01 8 134240017 134240017 C T WISP1 3'UTR 0.16 TCGA-55-7281-01 8 13959971 13959971 G A SGCZ Missense_Mutation p.P220S 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-55-7281-01 8 1497504 1497505 - T DLGAP2 Frame_Shift_Ins p.W216Lfs*60 0.13 TCGA-55-7281-01 8 30973963 30973963 A T WRN Silent p.L789L 0.24 TCGA-55-7281-01 8 43197459 43197461 ATG TT POTEA RNA 0.21 TCGA-55-7281-01 8 52387588 52387588 G T PXDNL Missense_Mutation p.P213H 0.28 deleterious(0) probably_damaging(0.988) TCGA-55-7281-01 8 53853136 53853136 T C NPBWR1 Silent p.Y223Y 0.30 TCGA-55-7281-01 8 77762527 77762527 C G ZFHX4 Missense_Mutation p.A1298G 0.14 benign(0.005) TCGA-55-7281-01 8 77776202 77776202 G A ZFHX4 Missense_Mutation p.A3418T 0.23 benign(0.004) TCGA-55-7281-01 8 82607015 82607015 C G SLC10A5 Missense_Mutation p.E65Q 0.35 tolerated(0.49) benign(0.033) TCGA-55-7281-01 9 108483876 108483876 G T TMEM38B Missense_Mutation p.V110F 0.24 deleterious(0.02) possibly_damaging(0.89) TCGA-55-7281-01 9 111881814 111881814 G A TMEM245 Missense_Mutation p.P127L 0.20 deleterious(0.03) probably_damaging(0.986) TCGA-55-7281-01 9 113173854 113173854 T C SVEP1 Missense_Mutation p.Y2046C 0.30 probably_damaging(0.992) TCGA-55-7281-01 9 118065 118065 C A FOXD4 Missense_Mutation p.D19Y 0.35 deleterious(0) possibly_damaging(0.535) TCGA-55-7281-01 9 123253683 123253683 T A CDK5RAP2 Nonsense_Mutation p.K462* 0.22 TCGA-55-7281-01 9 125620205 125620205 C A RC3H2 Silent p.A817A 0.35 TCGA-55-7281-01 9 127952031 127952031 C G PPP6C 5'UTR 0.46 TCGA-55-7281-01 9 131122783 131122783 C G SLC27A4 3'UTR 0.17 TCGA-55-7281-01 9 131750354 131750354 C T NUP188 Nonsense_Mutation p.Q808* 0.21 TCGA-55-7281-01 9 132566477 132566477 G T TOR1B Missense_Mutation p.G109C 0.19 deleterious(0) probably_damaging(1) TCGA-55-7281-01 9 135267523 135267523 C A TTF1 Missense_Mutation p.G643C 0.39 deleterious(0) probably_damaging(0.995) TCGA-55-7281-01 9 138656985 138656985 A T KCNT1 Nonsense_Mutation p.K382* 0.23 TCGA-55-7281-01 9 139814764 139814764 G C TRAF2 Missense_Mutation p.E253Q 0.23 tolerated(0.28) benign(0.025) TCGA-55-7281-01 9 140036576 140036576 C G GRIN1 Missense_Mutation p.R124G 0.29 deleterious(0) possibly_damaging(0.877) TCGA-55-7281-01 9 140036578 140036578 C G GRIN1 Silent p.R124R 0.30 TCGA-55-7281-01 9 140356475 140356475 C A PNPLA7 Missense_Mutation p.G1222W 0.39 deleterious(0) probably_damaging(1) TCGA-55-7281-01 9 140878624 140878624 C A CACNA1B Missense_Mutation p.A564E 0.50 deleterious(0.02) benign(0.433) TCGA-55-7281-01 9 18950780 18950780 G A FAM154A Missense_Mutation p.P65L 0.13 deleterious(0.01) probably_damaging(0.965) TCGA-55-7281-01 9 32635171 32635171 G T TAF1L Nonsense_Mutation p.S136* 0.27 TCGA-55-7281-01 9 74587783 74587783 G T C9orf85 3'UTR 0.32 TCGA-55-7281-01 9 8317706 8317706 G C PTPRD 3'UTR 0.40 TCGA-55-7281-01 9 84608884 84608884 G A SPATA31D1 Missense_Mutation p.G1167R 0.20 tolerated(0.18) probably_damaging(0.982) TCGA-55-7281-01 9 90501930 90501930 G T SPATA31E1 Missense_Mutation p.C843F 0.26 tolerated(0.18) benign(0.138) TCGA-55-7281-01 X 100078902 100078902 G C CSTF2 Missense_Mutation p.A158P 0.26 deleterious(0) probably_damaging(0.999) TCGA-55-7281-01 X 100911734 100911735 - T ARMCX2 Frame_Shift_Ins p.G281Rfs*23 0.13 TCGA-55-7281-01 X 101912052 101912052 C G GPRASP1 Missense_Mutation p.P1071A 0.35 deleterious(0.01) possibly_damaging(0.507) TCGA-55-7281-01 X 101970102 101970102 C A GPRASP2 Missense_Mutation p.A102D 0.27 deleterious(0.03) benign(0.282) TCGA-55-7281-01 X 102005196 102005196 G T BHLHB9 Nonsense_Mutation p.G425* 0.21 TCGA-55-7281-01 X 102005197 102005197 G T BHLHB9 Missense_Mutation p.G425V 0.21 deleterious(0) probably_damaging(0.998) TCGA-55-7281-01 X 103431193 103431193 G T FAM199X Missense_Mutation p.R207L 0.34 deleterious(0) probably_damaging(0.992) TCGA-55-7281-01 X 109695043 109695043 G T RGAG1 Missense_Mutation p.A400S 0.23 deleterious(0.01) benign(0.164) TCGA-55-7281-01 X 110494310 110494310 G T CAPN6 Nonsense_Mutation p.C331* 0.35 TCGA-55-7281-01 X 115572134 115572134 G T SLC6A14 Missense_Mutation p.G72V 0.22 deleterious(0) probably_damaging(1) TCGA-55-7281-01 X 120181528 120181528 C T GLUD2 5'UTR 0.07 TCGA-55-7281-01 X 12904321 12904321 C G TLR7 Missense_Mutation p.L232V 0.19 deleterious(0.01) possibly_damaging(0.696) TCGA-55-7281-01 X 129148822 129148822 G T BCORL1 Nonsense_Mutation p.E692* 0.35 TCGA-55-7281-01 X 130419008 130419008 A T IGSF1 Intron 0.42 TCGA-55-7281-01 X 135594228 135594228 G C HTATSF1 3'UTR 0.43 TCGA-55-7281-01 X 135757176 135757176 G T ARHGEF6 Silent p.G675G 0.23 TCGA-55-7281-01 X 135770121 135770121 C T ARHGEF6 Silent p.L405L 0.05 TCGA-55-7281-01 X 135956515 135956515 C A RBMX Missense_Mutation p.G321V 0.07 deleterious(0.03) probably_damaging(0.998) TCGA-55-7281-01 X 139866350 139866350 G T CDR1 Missense_Mutation p.T61K 0.31 tolerated(0.95) possibly_damaging(0.591) TCGA-55-7281-01 X 141291725 141291725 G T MAGEC2 Missense_Mutation p.P17T 0.27 tolerated_low_confidence(0.07) benign(0.015) TCGA-55-7281-01 X 147030403 147030403 C A FMR1 3'UTR 0.08 TCGA-55-7281-01 X 148564645 148564645 C T IDS Missense_Mutation p.V218I 0.36 tolerated(0.15) benign(0.036) TCGA-55-7281-01 X 148584925 148584925 T A IDS Missense_Mutation p.H112L 0.39 tolerated(0.25) benign(0.038) TCGA-55-7281-01 X 149100754 149100754 C A CXorf40B 3'UTR 0.22 TCGA-55-7281-01 X 150349293 150349293 C A GPR50 Missense_Mutation p.A413D 0.26 tolerated_low_confidence(0.07) benign(0.052) TCGA-55-7281-01 X 150349627 150349627 C A GPR50 Silent p.A524A 0.18 TCGA-55-7281-01 X 152937657 152937657 T C PNCK Splice_Site p.X150_splice 0.08 TCGA-55-7281-01 X 153133826 153133826 G T L1CAM Missense_Mutation p.P545H 0.20 deleterious(0.01) probably_damaging(0.971) TCGA-55-7281-01 X 153186130 153186130 C T ARHGAP4 Missense_Mutation p.G211R 0.25 tolerated(0.65) benign(0.128) TCGA-55-7281-01 X 153880627 153880627 G A CTAG2 Missense_Mutation p.P183L 0.25 deleterious_low_confidence(0) unknown(0) TCGA-55-7281-01 X 153993755 153993755 G T DKC1 Nonsense_Mutation p.E41* 0.24 TCGA-55-7281-01 X 154197711 154197711 G T F8 Missense_Mutation p.Q302K 0.27 tolerated(0.52) benign(0.141) TCGA-55-7281-01 X 155125283 155125283 C G VAMP7 Intron 0.24 TCGA-55-7281-01 X 1584790 1584790 A T P2RY8 Nonsense_Mutation p.L221* 0.29 TCGA-55-7281-01 X 17768022 17768022 T C SCML1 Silent p.Y104Y 0.41 TCGA-55-7281-01 X 19560137 19560137 C A SH3KBP1 Nonsense_Mutation p.E600* 0.10 TCGA-55-7281-01 X 24075597 24075597 C T EIF2S3 Missense_Mutation p.H65Y 0.16 tolerated(0.27) benign(0.013) TCGA-55-7281-01 X 24745975 24745975 G T POLA1 Missense_Mutation p.K530N 0.26 tolerated(0.06) benign(0.015) TCGA-55-7281-01 X 27765838 27765838 C A DCAF8L2 Missense_Mutation p.Q276K 0.38 deleterious(0) probably_damaging(0.987) TCGA-55-7281-01 X 3229500 3229500 C A MXRA5 Missense_Mutation p.K2248N 0.36 deleterious(0) probably_damaging(0.99) TCGA-55-7281-01 X 32407680 32407680 G A DMD Missense_Mutation p.P1486S 0.29 probably_damaging(0.954) TCGA-55-7281-01 X 35969947 35969947 A T CXorf22 Missense_Mutation p.I305F 0.18 tolerated(0.11) benign(0.013) TCGA-55-7281-01 X 40562805 40562805 T A MED14 Silent p.A434A 0.38 TCGA-55-7281-01 X 46508189 46508189 G T SLC9A7 Missense_Mutation p.S464Y 0.36 deleterious(0) possibly_damaging(0.823) TCGA-55-7281-01 X 46618330 46618330 C A SLC9A7 Silent p.G45G 0.43 TCGA-55-7281-01 X 47045727 47045727 G T RBM10 Missense_Mutation p.G870C 0.46 deleterious(0) probably_damaging(0.999) TCGA-55-7281-01 X 47046095 47046095 G T RBM10 3'UTR 0.24 TCGA-55-7281-01 X 47466576 47466576 T A SYN1 Missense_Mutation p.K133N 0.36 deleterious(0) probably_damaging(0.974) TCGA-55-7281-01 X 48920062 48920062 G C CCDC120 Missense_Mutation p.R38P 0.39 deleterious(0) probably_damaging(0.992) TCGA-55-7281-01 X 48933220 48933220 G C WDR45 Missense_Mutation p.P238A 0.29 tolerated(0.21) benign(0.317) TCGA-55-7281-01 X 49068426 49068426 C A CACNA1F Missense_Mutation p.Q1355H 0.34 tolerated(0.12) possibly_damaging(0.679) TCGA-55-7281-01 X 50350926 50350926 G A SHROOM4 Silent p.A1072A 0.32 TCGA-55-7281-01 X 53577916 53577916 G C HUWE1 Missense_Mutation p.R3111G 0.09 benign(0.25) TCGA-55-7281-01 X 54482964 54482964 G A FGD1 Missense_Mutation p.S558L 0.09 deleterious(0) benign(0.343) TCGA-55-7281-01 X 63410715 63410715 C A AMER1 Missense_Mutation p.G818W 0.23 deleterious(0) probably_damaging(1) TCGA-55-7281-01 X 64957044 64957044 G - MSN Frame_Shift_Del p.E366Kfs*59 0.32 TCGA-55-7281-01 X 65242194 65242194 C T VSIG4 Missense_Mutation p.A371T 0.35 tolerated(1) benign(0.001) TCGA-55-7281-01 X 65427105 65427105 G C HEPH Missense_Mutation p.R841T 0.29 deleterious(0.01) probably_damaging(0.993) TCGA-55-7281-01 X 67937571 67937571 C G STARD8 Missense_Mutation p.A272G 0.32 tolerated(0.4) benign(0.001) TCGA-55-7281-01 X 70321242 70321242 C A FOXO4 Missense_Mutation p.P388T 0.23 deleterious(0) probably_damaging(1) TCGA-55-7281-01 X 70321243 70321243 C A FOXO4 Missense_Mutation p.P388H 0.24 deleterious(0) probably_damaging(1) TCGA-55-7281-01 X 70345560 70345560 T G MED12 Missense_Mutation p.L807V 0.17 benign(0) TCGA-55-7281-01 X 72667506 72667506 G T CDX4 Silent p.T139T 0.33 TCGA-55-7281-01 X 73044698 73044698 C A XIST RNA 0.21 TCGA-55-7281-01 X 73751405 73751405 G T SLC16A2 3'UTR 0.13 TCGA-55-7281-01 X 78010848 78010848 G A LPAR4 Missense_Mutation p.G161D 0.30 deleterious(0.03) possibly_damaging(0.646) TCGA-55-7281-01 X 8434331 8434331 G T VCX3B Missense_Mutation p.Q216H 0.06 deleterious(0.05) unknown(0) TCGA-55-7281-01 X 86872999 86872999 G T KLHL4 Silent p.L264L 0.23 TCGA-55-7281-01 X 91132041 91132041 G A PCDH11X Missense_Mutation p.V268M 0.32 deleterious(0) probably_damaging(1) TCGA-55-7283-01 10 104161068 104161068 G A NFKB2 Missense_Mutation p.D735N 0.14 tolerated(0.07) benign(0.048) TCGA-55-7283-01 10 120802184 120802184 G A EIF3A Missense_Mutation p.L950F 0.14 tolerated(0.7) possibly_damaging(0.86) TCGA-55-7283-01 10 127461230 127461230 C T MMP21 Missense_Mutation p.D263N 0.16 deleterious(0) possibly_damaging(0.74) TCGA-55-7283-01 10 134648863 134648863 C T TTC40 Missense_Mutation p.R2230Q 0.10 tolerated(0.27) benign(0.014) TCGA-55-7283-01 10 15256429 15256429 C T FAM171A1 Silent p.E386E 0.18 TCGA-55-7283-01 10 31815845 31815845 C A ZEB1 Missense_Mutation p.H1011N 0.25 tolerated(0.3) benign(0.001) TCGA-55-7283-01 10 37451585 37451585 G T ANKRD30A Missense_Mutation p.G581W 0.20 deleterious(0.01) benign(0.053) TCGA-55-7283-01 10 55582280 55582280 G T PCDH15 Missense_Mutation p.H1738N 0.31 tolerated_low_confidence(0.11) probably_damaging(0.956) TCGA-55-7283-01 10 72195563 72195563 C T NODAL Missense_Mutation p.A124T 0.25 tolerated(0.53) benign(0.057) TCGA-55-7283-01 10 95720287 95720287 G A PIPSL RNA 0.10 TCGA-55-7283-01 11 103908471 103908471 T A DDI1 Silent p.I307I 0.16 TCGA-55-7283-01 11 105925172 105925172 C T KBTBD3 Missense_Mutation p.E82K 0.25 tolerated(0.17) possibly_damaging(0.641) TCGA-55-7283-01 11 10822547 10822547 C T EIF4G2 Missense_Mutation p.A501T 0.11 tolerated(0.53) benign(0.038) TCGA-55-7283-01 11 113679033 113679033 G A USP28 Missense_Mutation p.A764V 0.21 tolerated(0.3) benign(0.037) TCGA-55-7283-01 11 117062658 117062658 G C SIDT2 Silent p.P600P 0.07 TCGA-55-7283-01 11 122944421 122944421 G A CLMP Missense_Mutation p.R295W 0.11 deleterious(0.01) possibly_damaging(0.487) TCGA-55-7283-01 11 123813876 123813876 T A OR6T1 Missense_Mutation p.T224S 0.13 deleterious(0.03) possibly_damaging(0.777) TCGA-55-7283-01 11 123909323 123909323 A T OR10G7 Missense_Mutation p.L129H 0.18 deleterious(0) probably_damaging(0.98) TCGA-55-7283-01 11 124180000 124180000 G C OR8D1 Missense_Mutation p.I221M 0.29 deleterious(0) benign(0.444) TCGA-55-7283-01 11 18955453 18955453 C A MRGPRX1 Missense_Mutation p.R293S 0.14 deleterious(0.01) possibly_damaging(0.607) TCGA-55-7283-01 11 30557637 30557637 C A MPPED2 Missense_Mutation p.G72C 0.35 tolerated(0.19) possibly_damaging(0.724) TCGA-55-7283-01 11 36596541 36596541 G T RAG1 Missense_Mutation p.D563Y 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-55-7283-01 11 45949867 45949867 C T GYLTL1B Missense_Mutation p.R632C 0.10 deleterious(0) probably_damaging(0.998) TCGA-55-7283-01 11 46911554 46911554 C T LRP4 Missense_Mutation p.R678H 0.14 tolerated(1) benign(0.008) TCGA-55-7283-01 11 47306564 47306564 C T MADD Missense_Mutation p.P744S 0.18 tolerated_low_confidence(0.13) benign(0.002) TCGA-55-7283-01 11 47653245 47653245 C A MTCH2 Missense_Mutation p.A130S 0.16 deleterious(0.03) probably_damaging(1) TCGA-55-7283-01 11 49196483 49196483 A C FOLH1 Missense_Mutation p.Y356D 0.12 deleterious(0) probably_damaging(0.995) TCGA-55-7283-01 11 55136241 55136241 C A OR4A15 Silent p.P294P 0.21 TCGA-55-7283-01 11 57261530 57261530 C G SLC43A1 Missense_Mutation p.E269D 0.22 tolerated(0.14) benign(0.033) TCGA-55-7283-01 11 612770 612770 C G IRF7 Missense_Mutation p.E476Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-55-7283-01 11 62521022 62521022 G C ZBTB3 Missense_Mutation p.R89G 0.07 deleterious(0) probably_damaging(0.999) TCGA-55-7283-01 11 63585711 63585711 G A C11orf84 Missense_Mutation p.D161N 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.718) TCGA-55-7283-01 11 6622800 6622800 C T RRP8 Missense_Mutation p.D166N 0.07 tolerated(0.1) benign(0.008) TCGA-55-7283-01 11 73105693 73105693 C T RELT Silent p.P320P 0.11 TCGA-55-7283-01 11 92534900 92534900 G C FAT3 Silent p.T2907T 0.11 TCGA-55-7283-01 12 112843018 112843018 C T RPL6 3'UTR 0.33 TCGA-55-7283-01 12 124821386 124821386 C G NCOR2 Missense_Mutation p.A2010P 0.17 benign(0.08) TCGA-55-7283-01 12 22813996 22813996 G T ETNK1 Splice_Site p.X275_splice 0.39 TCGA-55-7283-01 12 22813997 22813997 G T ETNK1 Missense_Mutation p.R275S 0.39 tolerated(0.32) benign(0.21) TCGA-55-7283-01 12 25398285 25398285 C T KRAS Missense_Mutation p.G12S 0.40 deleterious(0.03) possibly_damaging(0.644) TCGA-55-7283-01 12 3701483 3701483 G T PRMT8 Missense_Mutation p.G356W 0.33 deleterious(0) probably_damaging(0.999) TCGA-55-7283-01 12 39763916 39763916 G A KIF21A Silent p.I64I 0.16 TCGA-55-7283-01 12 43825133 43825133 A T ADAMTS20 Splice_Site p.X1087_splice 0.21 TCGA-55-7283-01 12 48499420 48499420 C T PFKM 5'Flank 0.44 TCGA-55-7283-01 12 4919377 4919377 G A KCNA6 Missense_Mutation p.R57H 0.16 deleterious(0.01) possibly_damaging(0.787) TCGA-55-7283-01 12 5021642 5021642 G T KCNA1 Silent p.A366A 0.24 TCGA-55-7283-01 12 52567495 52567495 C T KRT80 Missense_Mutation p.M240I 0.11 tolerated(0.18) benign(0.004) TCGA-55-7283-01 12 52960666 52960666 G A KRT74 3'UTR 0.18 TCGA-55-7283-01 12 54678090 54678090 G C HNRNPA1 Missense_Mutation p.R371T 0.32 deleterious_low_confidence(0) unknown(0) TCGA-55-7283-01 12 56333946 56333946 G T DGKA Missense_Mutation p.D264Y 0.22 deleterious(0) probably_damaging(0.982) TCGA-55-7283-01 12 78515721 78515721 T A NAV3 Missense_Mutation p.L1251M 0.12 tolerated(0.07) possibly_damaging(0.891) TCGA-55-7283-01 12 91572199 91572199 C T DCN Missense_Mutation p.R44H 0.15 tolerated(0.13) benign(0) TCGA-55-7283-01 12 9313698 9313698 C T PZP Missense_Mutation p.E935K 0.09 deleterious(0.04) probably_damaging(0.971) TCGA-55-7283-01 13 101759838 101759838 G T NALCN Missense_Mutation p.A860E 0.14 tolerated(0.13) benign(0.201) TCGA-55-7283-01 13 114504650 114504650 T A TMEM255B Nonsense_Mutation p.Y178* 0.19 TCGA-55-7283-01 13 25417962 25417962 A G RNF17 Missense_Mutation p.H895R 0.17 tolerated(0.26) benign(0.001) TCGA-55-7283-01 13 95723952 95723952 C T ABCC4 Silent p.L1058L 0.08 TCGA-55-7283-01 14 102474660 102474660 C T DYNC1H1 Missense_Mutation p.P1988L 0.19 benign(0.039) TCGA-55-7283-01 14 105169539 105169539 C T INF2 Silent p.D163D 0.13 TCGA-55-7283-01 14 105239420 105239420 C A AKT1 Missense_Mutation p.D323Y 0.14 deleterious(0) probably_damaging(0.965) TCGA-55-7283-01 14 106994092 106994092 C T IGHV3-48 Missense_Mutation p.E25K 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.551) TCGA-55-7283-01 14 20216239 20216239 C A OR4Q3 Missense_Mutation p.S218Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-55-7283-01 14 20296152 20296152 C T OR4N2 Missense_Mutation p.P182L 0.19 deleterious(0.03) benign(0.033) TCGA-55-7283-01 14 21871246 21871246 C A CHD8 Missense_Mutation p.G1215V 0.14 deleterious(0) probably_damaging(1) TCGA-55-7283-01 14 35245502 35245502 G C BAZ1A Missense_Mutation p.S819C 0.06 deleterious(0) probably_damaging(0.971) TCGA-55-7283-01 14 42356775 42356775 C A LRFN5 Missense_Mutation p.P316H 0.42 deleterious(0) probably_damaging(1) TCGA-55-7283-01 14 52734683 52734683 C T PTGDR Missense_Mutation p.R51W 0.18 deleterious(0.01) benign(0.417) TCGA-55-7283-01 14 69847288 69847288 G A ERH Silent p.L94L 0.23 TCGA-55-7283-01 14 78189553 78189553 C G SNW1 Silent p.R367R 0.13 TCGA-55-7283-01 14 79454429 79454429 G T NRXN3 Missense_Mutation p.E696D 0.26 tolerated(0.99) benign(0.01) TCGA-55-7283-01 14 94084571 94084571 C A UNC79 Missense_Mutation p.L1243M 0.17 deleterious(0.04) benign(0.014) TCGA-55-7283-01 14 94568987 94568987 C T IFI27L1 3'UTR 0.20 TCGA-55-7283-01 15 25213175 25213175 A T SNURF Missense_Mutation p.R69S 0.14 tolerated_low_confidence(0.06) benign(0.017) TCGA-55-7283-01 15 40855224 40855224 G C C15orf57 Silent p.L6L 0.04 TCGA-55-7283-01 15 41482169 41482169 C T EXD1 Missense_Mutation p.R283H 0.12 deleterious(0.01) possibly_damaging(0.65) TCGA-55-7283-01 15 59192029 59192029 T A SLTM Missense_Mutation p.T233S 0.16 tolerated(0.74) unknown(0) TCGA-55-7283-01 15 59192032 59192032 G A SLTM Missense_Mutation p.H232Y 0.15 tolerated(0.83) unknown(0) TCGA-55-7283-01 15 90328672 90328672 C A ANPEP Nonsense_Mutation p.E938* 0.18 TCGA-55-7283-01 16 11038605 11038605 G A CLEC16A Missense_Mutation p.G11R 0.20 deleterious(0) probably_damaging(0.947) TCGA-55-7283-01 16 20347991 20347991 T A UMOD Missense_Mutation p.N600I 0.40 deleterious(0) probably_damaging(0.945) TCGA-55-7283-01 16 24366257 24366257 C T CACNG3 Silent p.N133N 0.12 TCGA-55-7283-01 16 2903248 2903248 G C PRSS22 Missense_Mutation p.A267G 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-55-7283-01 16 315027 315027 C T ITFG3 3'UTR 0.20 TCGA-55-7283-01 16 33647422 33647422 G T RP11-812E19.9 Missense_Mutation p.P60T 0.14 deleterious_low_confidence(0) benign(0.163) TCGA-55-7283-01 16 61760889 61760889 A T CDH8 Intron 0.25 TCGA-55-7283-01 16 67919847 67919847 C T NRN1L Intron 0.09 TCGA-55-7283-01 16 698178 698178 C A FAM195A Silent p.T157T 0.17 TCGA-55-7283-01 16 89799734 89799734 C A ZNF276 Missense_Mutation p.S398R 0.13 tolerated(0.67) benign(0.011) TCGA-55-7283-01 17 16342531 16342531 G C TRPV2 3'Flank 0.15 TCGA-55-7283-01 17 1703946 1703946 C T SMYD4 Missense_Mutation p.V248I 0.12 tolerated(0.57) benign(0.123) TCGA-55-7283-01 17 2202976 2202976 T C SMG6 Silent p.E357E 0.20 TCGA-55-7283-01 17 26925630 26925630 A T SPAG5 Silent p.P25P 0.18 TCGA-55-7283-01 17 28849455 28849455 G T GOSR1 3'UTR 0.09 TCGA-55-7283-01 17 32957127 32957127 C G TMEM132E Missense_Mutation p.S390C 0.11 deleterious(0.01) probably_damaging(0.976) TCGA-55-7283-01 17 39553800 39553800 G C KRT31 5'UTR 0.21 TCGA-55-7283-01 17 41003599 41003599 G T AOC3 Missense_Mutation p.G80V 0.09 deleterious(0) probably_damaging(0.998) TCGA-55-7283-01 17 41004733 41004733 C T AOC3 Missense_Mutation p.T458M 0.11 deleterious(0.01) benign(0.07) TCGA-55-7283-01 17 42337806 42337806 C A SLC4A1 Nonsense_Mutation p.E151* 0.31 TCGA-55-7283-01 17 4446343 4446343 G A MYBBP1A Silent p.T919T 0.12 TCGA-55-7283-01 17 6531765 6531765 C T KIAA0753 Silent p.Q130Q 0.09 TCGA-55-7283-01 17 72301535 72301535 C T DNAI2 Missense_Mutation p.R389C 0.34 deleterious(0) probably_damaging(0.94) TCGA-55-7283-01 17 72301536 72301536 G T DNAI2 Missense_Mutation p.R389L 0.36 deleterious(0.02) probably_damaging(0.953) TCGA-55-7283-01 17 72350347 72350347 C A KIF19 Silent p.A785A 0.10 TCGA-55-7283-01 17 7578500 7578500 G A TP53 Nonsense_Mutation p.Q144* 0.17 TCGA-55-7283-01 17 77077994 77077994 C T ENGASE Missense_Mutation p.S296F 0.08 deleterious(0) possibly_damaging(0.905) TCGA-55-7283-01 17 8109862 8109862 C A AURKB Missense_Mutation p.K211N 0.26 tolerated(1) benign(0.003) TCGA-55-7283-01 18 28588469 28588469 C A DSC3 Missense_Mutation p.R429L 0.08 deleterious(0.01) benign(0.268) TCGA-55-7283-01 18 31323805 31323805 T A ASXL3 Missense_Mutation p.S1331R 0.36 benign(0.07) TCGA-55-7283-01 19 14736360 14736360 C G EMR3 Missense_Mutation p.E622Q 0.12 deleterious(0.02) possibly_damaging(0.725) TCGA-55-7283-01 19 14866474 14866474 A G EMR2 Missense_Mutation p.S470P 0.09 deleterious(0) possibly_damaging(0.616) TCGA-55-7283-01 19 18703016 18703016 G - C19orf60 3'UTR 0.11 TCGA-55-7283-01 19 19168365 19168365 C T ARMC6 Silent p.A478A 0.14 TCGA-55-7283-01 19 19753363 19753363 C T GMIP Missense_Mutation p.E29K 0.18 deleterious(0.01) probably_damaging(0.986) TCGA-55-7283-01 19 22154074 22154074 T - ZNF208 Frame_Shift_Del p.K1254Nfs*? 0.16 TCGA-55-7283-01 19 24309344 24309344 C T ZNF254 Missense_Mutation p.S181F 0.11 tolerated(0.18) benign(0.013) TCGA-55-7283-01 19 32845809 32845809 C G ZNF507 Missense_Mutation p.H691Q 0.17 deleterious(0) possibly_damaging(0.88) TCGA-55-7283-01 19 37660826 37660826 C G ZNF585A 5'UTR 0.43 TCGA-55-7283-01 19 39957358 39957358 A G SUPT5H Missense_Mutation p.Q337R 0.19 tolerated(0.51) benign(0.313) TCGA-55-7283-01 19 50333455 50333456 CC G MED25 Frame_Shift_Del p.P267Afs*12 0.35 TCGA-55-7283-01 19 50453257 50453257 C T SIGLEC11 Silent p.E689E 0.26 TCGA-55-7283-01 19 53741564 53741564 G C ZNF677 Missense_Mutation p.S139C 0.27 deleterious(0.04) possibly_damaging(0.67) TCGA-55-7283-01 19 54726852 54726852 G A LILRB3 5'Flank 0.10 TCGA-55-7283-01 19 54758820 54758820 G A LILRB5 Nonsense_Mutation p.Q345* 0.09 TCGA-55-7283-01 19 55607673 55607673 G A PPP1R12C Missense_Mutation p.R328W 0.20 deleterious(0) benign(0.003) TCGA-55-7283-01 19 9089456 9089456 T A MUC16 Missense_Mutation p.N787Y 0.17 unknown(0) TCGA-55-7283-01 1 109839703 109839703 T A MYBPHL Missense_Mutation p.Y180F 0.21 deleterious(0) probably_damaging(0.995) TCGA-55-7283-01 1 110882411 110882411 C T RBM15 Silent p.S128S 0.13 TCGA-55-7283-01 1 11561291 11561291 G A PTCHD2 Missense_Mutation p.G81D 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.492) TCGA-55-7283-01 1 12364726 12364726 C T VPS13D Missense_Mutation p.S2127F 0.11 benign(0.034) TCGA-55-7283-01 1 148932845 148932845 T A RP11-14N7.2 RNA 0.05 TCGA-55-7283-01 1 149858580 149858580 C A HIST2H2AC Nonsense_Mutation p.S19* 0.04 TCGA-55-7283-01 1 152382721 152382721 G A CRNN Silent p.S279S 0.11 TCGA-55-7283-01 1 156821927 156821927 C T INSRR Missense_Mutation p.E232K 0.11 tolerated(0.2) benign(0.06) TCGA-55-7283-01 1 156834552 156834552 C T NTRK1 Missense_Mutation p.A107V 0.06 deleterious(0.01) probably_damaging(0.992) TCGA-55-7283-01 1 158626351 158626351 T A SPTA1 Intron 0.19 TCGA-55-7283-01 1 158687287 158687287 T C OR6K3 Missense_Mutation p.I207V 0.11 tolerated(0.17) benign(0.074) TCGA-55-7283-01 1 161202597 161202597 C T NR1I3 Missense_Mutation p.R183H 0.08 deleterious(0) possibly_damaging(0.699) TCGA-55-7283-01 1 171254448 171254448 C T FMO1 Missense_Mutation p.T455M 0.09 deleterious(0.04) benign(0.11) TCGA-55-7283-01 1 200819231 200819231 C G CAMSAP2 Missense_Mutation p.L1112V 0.05 deleterious(0) possibly_damaging(0.868) TCGA-55-7283-01 1 203743399 203743399 C G LAX1 Missense_Mutation p.Q263E 0.06 tolerated(0.21) probably_damaging(0.932) TCGA-55-7283-01 1 205290688 205290688 C A NUAK2 Silent p.L23L 0.13 TCGA-55-7283-01 1 216850650 216850650 G A ESRRG Silent p.D85D 0.20 TCGA-55-7283-01 1 228432127 228432127 G C OBSCN Missense_Mutation p.K1204N 0.08 possibly_damaging(0.78) TCGA-55-7283-01 1 228495874 228495874 G T OBSCN Nonsense_Mutation p.E5134* 0.43 TCGA-55-7283-01 1 231829772 231829772 T A DISC1 Missense_Mutation p.S90T 0.17 tolerated(0.4) benign(0.275) TCGA-55-7283-01 1 247492647 247492647 C T ZNF496 Silent p.K78K 0.10 TCGA-55-7283-01 1 247695824 247695824 G T OR2C3 5'UTR 0.32 TCGA-55-7283-01 1 31532134 31532134 C A PUM1 Missense_Mutation p.G94W 0.27 deleterious_low_confidence(0) benign(0.431) TCGA-55-7283-01 1 41215346 41215346 C T NFYC Silent p.R93R 0.36 TCGA-55-7283-01 1 45270044 45270044 A T PLK3 Missense_Mutation p.E459V 0.22 tolerated(0.1) possibly_damaging(0.858) TCGA-55-7283-01 1 62367102 62367102 G A INADL Missense_Mutation p.A1118T 0.15 tolerated(0.17) probably_damaging(0.998) TCGA-55-7283-01 1 85733446 85733446 G C BCL10 Nonsense_Mutation p.S189* 0.24 TCGA-55-7283-01 1 87041018 87041018 G T CLCA4 Missense_Mutation p.G563C 0.18 deleterious(0) probably_damaging(1) TCGA-55-7283-01 1 98187218 98187218 C T DPYD Missense_Mutation p.G111R 0.16 deleterious(0) probably_damaging(0.998) TCGA-55-7283-01 20 16352372 16352372 G A KIF16B Missense_Mutation p.R1129C 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-7283-01 20 17640864 17640864 G A RRBP1 Nonsense_Mutation p.R97* 0.21 TCGA-55-7283-01 20 44664453 44664453 C T SLC12A5 Missense_Mutation p.P129L 0.12 deleterious(0) probably_damaging(0.932) TCGA-55-7283-01 20 44806630 44806630 G A CDH22 Missense_Mutation p.P624S 0.21 tolerated(0.16) probably_damaging(0.996) TCGA-55-7283-01 20 47886812 47886812 C G ZNFX1 Missense_Mutation p.E513Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-55-7283-01 20 56188371 56188371 C G ZBP1 Missense_Mutation p.R173T 0.05 tolerated(0.15) benign(0.006) TCGA-55-7283-01 20 57576612 57576612 C A CTSZ Missense_Mutation p.C132F 0.12 deleterious(0) probably_damaging(1) TCGA-55-7283-01 20 8717773 8717773 G T PLCB1 Missense_Mutation p.K714N 0.22 deleterious(0) possibly_damaging(0.837) TCGA-55-7283-01 21 26976215 26976215 G A MRPL39 Silent p.L105L 0.14 TCGA-55-7283-01 21 28306881 28306881 G T ADAMTS5 Silent p.T531T 0.11 TCGA-55-7283-01 21 41416149 41416149 C A DSCAM Missense_Mutation p.A1747S 0.24 tolerated(0.7) benign(0.083) TCGA-55-7283-01 21 43411294 43411294 C A ZBTB21 Nonsense_Mutation p.E971* 0.10 TCGA-55-7283-01 21 43412359 43412359 C A ZBTB21 Nonsense_Mutation p.E616* 0.09 TCGA-55-7283-01 22 20052267 20052267 T C TANGO2 3'UTR 0.17 TCGA-55-7283-01 22 22931014 22931014 A G IGLV2-33 Missense_Mutation p.Y70C 0.25 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-55-7283-01 22 46682990 46682990 C T TTC38 Silent p.A285A 0.35 TCGA-55-7283-01 2 158115947 158115947 G T GALNT5 Missense_Mutation p.K451N 0.09 deleterious(0) possibly_damaging(0.688) TCGA-55-7283-01 2 1642712 1642712 G A PXDN Missense_Mutation p.S1371L 0.07 tolerated(0.36) benign(0.001) TCGA-55-7283-01 2 165997469 165997469 G A SCN3A Missense_Mutation p.R571C 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-55-7283-01 2 167760139 167760139 G A XIRP2 Silent p.E49E 0.12 TCGA-55-7283-01 2 169938262 169938262 C T DHRS9 Silent p.I57I 0.33 TCGA-55-7283-01 2 179406266 179406266 C T TTN Missense_Mutation p.R32513H 0.27 TCGA-55-7283-01 2 179427449 179427449 C T TTN Missense_Mutation p.E27804K 0.26 TCGA-55-7283-01 2 182347286 182347286 G T ITGA4 Missense_Mutation p.A317S 0.10 tolerated(0.53) benign(0.17) TCGA-55-7283-01 2 201355337 201355337 C T KCTD18 Missense_Mutation p.R256Q 0.07 deleterious_low_confidence(0.03) possibly_damaging(0.867) TCGA-55-7283-01 2 201515740 201515740 A T AOX1 Missense_Mutation p.Y964F 0.17 tolerated(0.42) benign(0.12) TCGA-55-7283-01 2 21224710 21224710 G A APOB Silent p.Y4528Y 0.22 TCGA-55-7283-01 2 21231013 21231013 C G APOB Missense_Mutation p.E2909D 0.09 benign(0.003) TCGA-55-7283-01 2 220404493 220404493 A G CHPF Missense_Mutation p.F647S 0.07 deleterious(0) possibly_damaging(0.87) TCGA-55-7283-01 2 228148568 228148568 G C COL4A3 Missense_Mutation p.Q914H 0.10 unknown(0) TCGA-55-7283-01 2 39414782 39414782 C G CDKL4 Missense_Mutation p.E241Q 0.10 tolerated(0.18) possibly_damaging(0.712) TCGA-55-7283-01 2 39431698 39431698 T A CDKL4 Missense_Mutation p.I142F 0.09 deleterious(0) benign(0.281) TCGA-55-7283-01 2 45235795 45235795 C A SIX2 Missense_Mutation p.R152L 0.16 tolerated(0.06) possibly_damaging(0.898) TCGA-55-7283-01 2 55562132 55562132 C G CCDC88A Missense_Mutation p.E609Q 0.11 tolerated(0.15) probably_damaging(0.999) TCGA-55-7283-01 2 88484874 88484874 G T THNSL2 Missense_Mutation p.V369L 0.21 deleterious(0.04) benign(0.11) TCGA-55-7283-01 2 90121908 90121908 C A IGKV1D-17 Silent p.T42T 0.06 TCGA-55-7283-01 2 95766250 95766250 C A MRPS5 Missense_Mutation p.R300S 0.23 tolerated(0.12) benign(0.1) TCGA-55-7283-01 3 112710151 112710151 T C GTPBP8 Missense_Mutation p.I102T 0.16 tolerated(0.06) benign(0.004) TCGA-55-7283-01 3 113755597 113755597 G A KIAA1407 Missense_Mutation p.T151I 0.16 deleterious(0.03) benign(0.042) TCGA-55-7283-01 3 12195027 12195027 G A TIMP4 Silent p.I221I 0.11 TCGA-55-7283-01 3 123071356 123071356 A T ADCY5 Missense_Mutation p.S403T 0.22 deleterious(0.01) possibly_damaging(0.776) TCGA-55-7283-01 3 133930409 133930409 T C RYK Missense_Mutation p.M131V 0.11 deleterious(0.01) benign(0.013) TCGA-55-7283-01 3 134670690 134670690 C T EPHB1 Nonsense_Mutation p.Q201* 0.19 TCGA-55-7283-01 3 142095375 142095375 T A XRN1 Missense_Mutation p.Y926F 0.23 tolerated(0.06) benign(0.042) TCGA-55-7283-01 3 164737452 164737452 C A SI Missense_Mutation p.A1121S 0.12 tolerated(0.67) benign(0.41) TCGA-55-7283-01 3 164786586 164786586 G T SI Missense_Mutation p.P136H 0.13 deleterious(0) possibly_damaging(0.804) TCGA-55-7283-01 3 193372741 193372741 A T OPA1 Silent p.S683S 0.31 TCGA-55-7283-01 3 396330 396330 T C CHL1 Silent p.P347P 0.14 TCGA-55-7283-01 3 49051255 49051255 C G WDR6 Nonsense_Mutation p.S793* 0.22 TCGA-55-7283-01 4 108935703 108935703 G A HADH Silent p.V126V 0.53 TCGA-55-7283-01 4 120528141 120528141 A T PDE5A Nonsense_Mutation p.L155* 0.11 TCGA-55-7283-01 4 126411587 126411587 C A FAT4 Missense_Mutation p.P4537H 0.09 probably_damaging(0.91) TCGA-55-7283-01 4 134071517 134071517 C T PCDH10 Silent p.Y74Y 0.06 TCGA-55-7283-01 4 141543336 141543336 G C TBC1D9 3'UTR 0.08 TCGA-55-7283-01 4 155318 155318 A C ZNF718 RNA 0.14 TCGA-55-7283-01 4 166924542 166924542 G C TLL1 Splice_Site p.X211_splice 0.12 TCGA-55-7283-01 4 22390066 22390066 G A GPR125 Silent p.P1076P 0.16 TCGA-55-7283-01 4 3451002 3451002 C T HGFAC Silent p.G608G 0.17 TCGA-55-7283-01 4 78830471 78830471 A T MRPL1 Missense_Mutation p.H241L 0.15 tolerated(0.56) benign(0.009) TCGA-55-7283-01 4 884359 884359 G A GAK Missense_Mutation p.P348S 0.14 tolerated(0.48) benign(0.006) TCGA-55-7283-01 5 111091509 111091509 T A NREP Intron 0.19 TCGA-55-7283-01 5 140070834 140070834 C G HARS Missense_Mutation p.R19P 0.11 deleterious(0) probably_damaging(0.992) TCGA-55-7283-01 5 140255829 140255829 G A PCDHA12 Missense_Mutation p.D258N 0.14 deleterious_low_confidence(0.02) benign(0.018) TCGA-55-7283-01 5 156890126 156890126 C A NIPAL4 Missense_Mutation p.S83Y 0.11 tolerated(0.14) benign(0.03) TCGA-55-7283-01 5 170814866 170814866 G A NPM1 5'UTR 0.31 TCGA-55-7283-01 5 170834751 170834751 G C NPM1 Missense_Mutation p.K273N 0.17 tolerated(0.08) benign(0.071) TCGA-55-7283-01 5 21752319 21752319 G A CDH12 Nonsense_Mutation p.R638* 0.17 TCGA-55-7283-01 5 45262226 45262226 C T HCN1 Missense_Mutation p.G824R 0.10 deleterious_low_confidence(0.01) benign(0.169) TCGA-55-7283-01 5 45262359 45262359 C A HCN1 Silent p.L779L 0.15 TCGA-55-7283-01 5 78324334 78324334 C T DMGDH Missense_Mutation p.D652N 0.11 tolerated(0.48) benign(0.003) TCGA-55-7283-01 5 83239147 83239147 A G EDIL3 3'UTR 0.20 TCGA-55-7283-01 5 9190395 9190395 G A SEMA5A Silent p.I419I 0.12 TCGA-55-7283-01 5 96126056 96126056 A T ERAP1 Missense_Mutation p.D489E 0.08 tolerated(0.54) benign(0.012) TCGA-55-7283-01 6 26045730 26045730 C T HIST1H3C Missense_Mutation p.P31L 0.09 deleterious_low_confidence(0) benign(0.011) TCGA-55-7283-01 6 26410240 26410240 G C BTN3A1 Missense_Mutation p.R315T 0.03 deleterious(0.03) benign(0.012) TCGA-55-7283-01 6 29639295 29639295 G A MOG 3'UTR 0.08 TCGA-55-7283-01 6 29911171 29911171 G - HLA-A Frame_Shift_Del p.W157* 0.16 TCGA-55-7283-01 6 30891283 30891283 G C VARS2 Splice_Site p.X852_splice 0.12 TCGA-55-7283-01 6 33406331 33406331 G C SYNGAP1 Missense_Mutation p.D508H 0.04 deleterious(0) probably_damaging(0.961) TCGA-55-7283-01 6 35388010 35388010 C G PPARD Missense_Mutation p.D79E 0.08 deleterious(0) possibly_damaging(0.747) TCGA-55-7283-01 6 47847083 47847083 C A PTCHD4 Silent p.S499S 0.43 TCGA-55-7283-01 6 52052547 52052547 C T IL17A Silent p.T58T 0.10 TCGA-55-7283-01 6 56458704 56458704 C A DST Missense_Mutation p.E1538D 0.10 benign(0.12) TCGA-55-7283-01 6 56469665 56469665 G C DST Intron 0.13 TCGA-55-7283-01 6 56470280 56470280 G A DST Intron 0.08 TCGA-55-7283-01 7 100483532 100483532 A G SRRT Silent p.K476K 0.10 TCGA-55-7283-01 7 128588302 128588302 C T IRF5 Missense_Mutation p.P407S 0.23 deleterious(0) probably_damaging(1) TCGA-55-7283-01 7 138145939 138145942 ACTT - TRIM24 Intron 0.41 TCGA-55-7283-01 7 142749587 142749587 C T OR6V1 Silent p.D50D 0.22 TCGA-55-7283-01 7 150721177 150721177 G C ATG9B Missense_Mutation p.P112A 0.12 deleterious_low_confidence(0.01) benign(0.115) TCGA-55-7283-01 7 2289541 2289541 G A NUDT1 Missense_Mutation p.G91S 0.14 deleterious(0.03) probably_damaging(0.997) TCGA-55-7283-01 7 23351854 23351854 C T IGF2BP3 3'UTR 0.16 TCGA-55-7283-01 7 2984046 2984046 C T CARD11 Missense_Mutation p.E162K 0.07 deleterious(0) possibly_damaging(0.687) TCGA-55-7283-01 7 30058645 30058645 A G FKBP14 Silent p.D148D 0.12 TCGA-55-7283-01 7 30915236 30915236 T G FAM188B Missense_Mutation p.F646V 0.17 deleterious(0.02) possibly_damaging(0.673) TCGA-55-7283-01 7 31102851 31102851 G A ADCYAP1R1 5'UTR 0.15 TCGA-55-7283-01 7 33057183 33057183 G A NT5C3A Silent p.L192L 0.45 TCGA-55-7283-01 7 34867158 34867158 C A NPSR1 Silent p.T208T 0.08 TCGA-55-7283-01 7 34867159 34867159 C A NPSR1 Missense_Mutation p.P209T 0.09 tolerated(0.21) probably_damaging(0.944) TCGA-55-7283-01 7 71252772 71252772 G T CALN1 Missense_Mutation p.S258R 0.25 tolerated_low_confidence(0.07) benign(0.35) TCGA-55-7283-01 7 81372711 81372711 C A HGF Missense_Mutation p.D275Y 0.29 deleterious(0) probably_damaging(1) TCGA-55-7283-01 7 82545902 82545902 G T PCLO Nonsense_Mutation p.Y3800* 0.17 TCGA-55-7283-01 7 99795408 99795408 A G STAG3 Missense_Mutation p.E358G 0.09 deleterious(0) possibly_damaging(0.66) TCGA-55-7283-01 8 116426524 116426524 T C TRPS1 Silent p.V1204V 0.24 TCGA-55-7283-01 8 116631652 116631652 G T TRPS1 Missense_Mutation p.P225T 0.12 tolerated_low_confidence(0.82) benign(0.001) TCGA-55-7283-01 8 124693303 124693303 C T ANXA13 3'UTR 0.13 TCGA-55-7283-01 8 143857024 143857024 C G LYNX1 Missense_Mutation p.M47I 0.24 deleterious(0.05) benign(0.009) TCGA-55-7283-01 8 2808709 2808709 G T CSMD1 Missense_Mutation p.D3376E 0.46 benign(0.147) TCGA-55-7283-01 8 48790322 48790322 C T PRKDC Missense_Mutation p.E1775K 0.07 possibly_damaging(0.621) TCGA-55-7283-01 8 85441676 85441676 C A RALYL Silent p.A53A 0.42 TCGA-55-7283-01 8 88885892 88885892 G T DCAF4L2 Missense_Mutation p.T103N 0.38 tolerated(1) benign(0.001) TCGA-55-7283-01 8 99105446 99105446 C T C8orf47 Intron 0.11 TCGA-55-7283-01 9 107331812 107331812 C T OR13C8 Missense_Mutation p.R122C 0.21 tolerated(0.05) benign(0.091) TCGA-55-7283-01 9 107361392 107361392 C T OR13C5 Missense_Mutation p.M101I 0.07 deleterious(0) benign(0.073) TCGA-55-7283-01 9 113194760 113194760 C T SVEP1 Missense_Mutation p.V1739I 0.20 benign(0.001) TCGA-55-7283-01 9 114454670 114454670 G A C9orf84 Missense_Mutation p.A1132V 0.16 tolerated(0.06) benign(0.306) TCGA-55-7283-01 9 115760036 115760036 T C ZNF883 RNA 0.08 TCGA-55-7283-01 9 116779005 116779005 G T ZNF618 Missense_Mutation p.G250V 0.15 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-55-7283-01 9 116824992 116824992 C T AMBP Missense_Mutation p.G217D 0.19 tolerated(0.41) benign(0.111) TCGA-55-7283-01 9 130430376 130430376 T C STXBP1 Missense_Mutation p.I271T 0.23 tolerated(0.76) benign(0.012) TCGA-55-7283-01 9 18928737 18928737 G T FAM154A Silent p.G246G 0.35 TCGA-55-7283-01 9 32436252 32436252 A T ACO1 Missense_Mutation p.T702S 0.17 tolerated(0.41) benign(0.007) TCGA-55-7283-01 9 70177785 70177785 C - FOXD4L5 Frame_Shift_Del p.V67Lfs*96 0.11 TCGA-55-7283-01 9 90502131 90502131 G A SPATA31E1 Missense_Mutation p.S910N 0.15 tolerated(0.07) possibly_damaging(0.674) TCGA-55-7283-01 9 96421880 96421880 G T PHF2 Nonsense_Mutation p.E443* 0.46 TCGA-55-7283-01 9 98241374 98241374 G A PTCH1 Missense_Mutation p.H375Y 0.15 tolerated(0.27) benign(0.086) TCGA-55-7283-01 X 107224449 107224449 C T TEX13B Missense_Mutation p.C267Y 0.14 deleterious(0) benign(0.41) TCGA-55-7283-01 X 111078148 111078148 C T TRPC5 Splice_Site p.X632_splice 0.18 TCGA-55-7283-01 X 119007299 119007299 G C NDUFA1 Missense_Mutation p.W45C 0.17 deleterious(0) probably_damaging(0.99) TCGA-55-7283-01 X 123179212 123179212 C A STAG2 Missense_Mutation p.L221M 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-55-7283-01 X 129629658 129629658 G A RP1-274L7.1 Intron 0.21 TCGA-55-7283-01 X 140995417 140995417 C A MAGEC1 Missense_Mutation p.P743T 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.641) TCGA-55-7283-01 X 141291161 141291161 A G MAGEC2 Missense_Mutation p.F205L 0.17 tolerated(0.1) benign(0.023) TCGA-55-7283-01 X 153577354 153577354 C A FLNA Nonsense_Mutation p.E2603* 0.26 TCGA-55-7283-01 X 153577355 153577355 C A FLNA Missense_Mutation p.E2602D 0.26 tolerated(0.13) possibly_damaging(0.788) TCGA-55-7283-01 X 154348404 154348404 A G BRCC3 Silent p.Q310Q 0.19 TCGA-55-7283-01 X 18665334 18665334 G T RS1 Silent p.A101A 0.20 TCGA-55-7283-01 X 32328364 32328364 C T DMD Silent p.V1984V 0.23 TCGA-55-7283-01 X 35820269 35820269 C A MAGEB16 5'UTR 0.20 TCGA-55-7283-01 X 54209178 54209178 C A FAM120C Missense_Mutation p.A152S 0.14 tolerated(0.13) benign(0.359) TCGA-55-7283-01 X 70511691 70511691 C T NONO Nonsense_Mutation p.R73* 0.11 TCGA-55-7283-01 X 76938254 76938254 C A ATRX Missense_Mutation p.G832C 0.06 possibly_damaging(0.8) TCGA-55-7283-01 X 82763313 82763313 G T POU3F4 5'UTR 0.13 TCGA-55-7284-01 10 116735177 116735177 T G TRUB1 3'UTR 0.22 TCGA-55-7284-01 11 118828883 118828883 C T UPK2 Silent p.V165V 0.27 TCGA-55-7284-01 11 124766537 124766537 G A ROBO4 Missense_Mutation p.R144W 0.19 deleterious(0.01) possibly_damaging(0.863) TCGA-55-7284-01 11 17434251 17434251 C T ABCC8 Missense_Mutation p.A840T 0.19 deleterious(0) possibly_damaging(0.868) TCGA-55-7284-01 11 1856654 1856654 C A SYT8 Missense_Mutation p.L89M 0.35 tolerated(0.18) possibly_damaging(0.625) TCGA-55-7284-01 11 31616339 31616339 A G ELP4 Missense_Mutation p.D135G 0.18 deleterious(0.02) probably_damaging(0.911) TCGA-55-7284-01 11 58189899 58189899 A G OR5B2 Missense_Mutation p.I279T 0.28 deleterious_low_confidence(0) benign(0.41) TCGA-55-7284-01 11 62489325 62489325 G A HNRNPUL2 Silent p.V483V 0.06 TCGA-55-7284-01 11 6942344 6942344 C T OR2D3 Nonsense_Mutation p.Q38* 0.20 TCGA-55-7284-01 12 104725367 104725367 G A TXNRD1 Missense_Mutation p.C533Y 0.32 deleterious(0) probably_damaging(1) TCGA-55-7284-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.35 deleterious(0) benign(0.361) TCGA-55-7284-01 13 28368023 28368023 G T GSX1 Nonsense_Mutation p.E245* 0.13 TCGA-55-7284-01 14 60976497 60976497 C T SIX6 Silent p.D127D 0.05 TCGA-55-7284-01 14 79117624 79117624 G T NRXN3 Missense_Mutation p.L19F 0.19 deleterious(0) probably_damaging(0.991) TCGA-55-7284-01 15 42169382 42169382 G A SPTBN5 Nonsense_Mutation p.R1215* 0.18 TCGA-55-7284-01 15 79323838 79323838 A T RASGRF1 Missense_Mutation p.I389N 0.15 deleterious(0) probably_damaging(1) TCGA-55-7284-01 15 83933130 83933130 A G BNC1 Silent p.T291T 0.05 TCGA-55-7284-01 17 19645331 19645331 C T ALDH3A1 Silent p.L225L 0.18 TCGA-55-7284-01 17 33585880 33585880 A G SLFN5 Missense_Mutation p.I57M 0.14 deleterious(0) benign(0.01) TCGA-55-7284-01 17 48470103 48470103 G C LRRC59 Silent p.L107L 0.22 TCGA-55-7284-01 17 7256609 7256609 C T KCTD11 Silent p.S116S 0.08 TCGA-55-7284-01 19 35849929 35849929 G A FFAR3 Missense_Mutation p.R46H 0.26 tolerated(0.13) benign(0.013) TCGA-55-7284-01 19 4423358 4423358 A G CHAF1A Missense_Mutation p.K425R 0.06 deleterious(0.04) unknown(0) TCGA-55-7284-01 19 49490630 49490630 G A GYS1 Missense_Mutation p.R105C 0.23 deleterious(0) probably_damaging(0.997) TCGA-55-7284-01 19 52376677 52376677 C T ZNF577 Missense_Mutation p.G189D 0.25 tolerated(0.11) benign(0.002) TCGA-55-7284-01 19 54802517 54802517 C T LILRA3 Silent p.S308S 0.12 TCGA-55-7284-01 19 56466134 56466134 G A NLRP8 Missense_Mutation p.R237H 0.26 tolerated(0.21) benign(0.372) TCGA-55-7284-01 1 156565217 156565217 C T GPATCH4 Missense_Mutation p.E306K 0.12 tolerated_low_confidence(0.1) benign(0.005) TCGA-55-7284-01 1 175372552 175372552 G A TNR Missense_Mutation p.R234W 0.27 deleterious(0.02) possibly_damaging(0.836) TCGA-55-7284-01 1 202742306 202742306 T A KDM5B Missense_Mutation p.R172S 0.26 deleterious(0) probably_damaging(1) TCGA-55-7284-01 1 216074160 216074160 G C USH2A Missense_Mutation p.A2463G 0.13 probably_damaging(0.998) TCGA-55-7284-01 1 23240034 23240034 A T EPHB2 Missense_Mutation p.M979L 0.08 tolerated(0.68) benign(0.018) TCGA-55-7284-01 1 248367070 248367070 G A OR2M3 Missense_Mutation p.R234H 0.18 tolerated(0.1) benign(0.013) TCGA-55-7284-01 1 39879984 39879984 G T KIAA0754 Silent p.V1213V 0.17 TCGA-55-7284-01 1 6184608 6184608 C T CHD5 Missense_Mutation p.R1503H 0.14 deleterious(0) probably_damaging(0.998) TCGA-55-7284-01 20 44699003 44699003 C T NCOA5 Missense_Mutation p.D71N 0.15 tolerated_low_confidence(0.11) unknown(0) TCGA-55-7284-01 20 57484421 57484421 G A GNAS Missense_Mutation p.R844H 0.33 deleterious(0.01) probably_damaging(1) TCGA-55-7284-01 20 62200050 62200050 C T HELZ2 Missense_Mutation p.R464H 0.26 tolerated(0.09) benign(0.001) TCGA-55-7284-01 21 45671545 45671545 C T DNMT3L Missense_Mutation p.A244T 0.08 tolerated(0.06) benign(0.244) TCGA-55-7284-01 2 163083059 163083059 T G FAP Missense_Mutation p.K55T 0.22 deleterious(0.03) benign(0.123) TCGA-55-7284-01 2 179583966 179583966 C T TTN Missense_Mutation p.D8051N 0.24 TCGA-55-7284-01 2 190335579 190335579 A G WDR75 Missense_Mutation p.E675G 0.11 deleterious(0.04) benign(0.177) TCGA-55-7284-01 2 237405897 237405897 C T IQCA1 Missense_Mutation p.R82H 0.10 deleterious(0) probably_damaging(0.999) TCGA-55-7284-01 2 66670114 66670114 C T MEIS1 Silent p.D188D 0.17 TCGA-55-7284-01 3 183547335 183547335 G A PARL 3'UTR 0.16 TCGA-55-7284-01 3 25778862 25778862 A T NGLY1 Silent p.A322A 0.15 TCGA-55-7284-01 4 153332524 153332524 C T FBXW7 Silent p.T144T 0.15 TCGA-55-7284-01 5 89939662 89939662 C T GPR98 Missense_Mutation p.R866W 0.11 possibly_damaging(0.876) TCGA-55-7284-01 6 111650791 111650791 T A REV3L Missense_Mutation p.N2729Y 0.25 deleterious(0) probably_damaging(1) TCGA-55-7284-01 6 161529866 161529866 G A MAP3K4 Missense_Mutation p.R1404Q 0.19 deleterious(0.01) possibly_damaging(0.906) TCGA-55-7284-01 7 19184889 19184889 A C FERD3L Missense_Mutation p.F33V 0.04 tolerated(0.19) benign(0.007) TCGA-55-7284-01 7 3678652 3678652 T C SDK1 Silent p.L159L 0.23 TCGA-55-7284-01 8 2046716 2046716 C T MYOM2 Silent p.Y781Y 0.18 TCGA-55-7284-01 9 131395180 131395180 C T SPTAN1 Silent p.F2418F 0.21 TCGA-55-7284-01 9 132382040 132382040 C T C9orf50 Missense_Mutation p.C193Y 0.18 tolerated(0.29) possibly_damaging(0.737) TCGA-55-7284-01 9 27950347 27950347 C T LINGO2 Missense_Mutation p.R108H 0.04 tolerated(0.14) benign(0.016) TCGA-55-7284-01 9 99006665 99006665 G A HSD17B3 Silent p.C206C 0.16 TCGA-55-7570-01 10 103900471 103900471 G C PPRC1 Missense_Mutation p.E736Q 0.30 deleterious_low_confidence(0.03) possibly_damaging(0.753) TCGA-55-7570-01 10 104416717 104416717 C G TRIM8 Missense_Mutation p.S421C 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.613) TCGA-55-7570-01 10 105903276 105903276 C A WDR96 Missense_Mutation p.D1356Y 0.27 deleterious(0) probably_damaging(1) TCGA-55-7570-01 10 115348000 115348000 G C HABP2 Missense_Mutation p.G519R 0.24 deleterious(0.02) possibly_damaging(0.726) TCGA-55-7570-01 10 115384682 115384682 T G NRAP Missense_Mutation p.Y751S 0.30 deleterious(0) probably_damaging(1) TCGA-55-7570-01 10 117093875 117093875 C G ATRNL1 Missense_Mutation p.Q1041E 0.29 tolerated(1) benign(0.002) TCGA-55-7570-01 10 124648214 124648214 C A RP11-564D11.3 RNA 0.89 TCGA-55-7570-01 10 124747013 124747013 G - PSTK Frame_Shift_Del p.*349Efs*10 0.19 TCGA-55-7570-01 10 125526609 125526609 G T CPXM2 Missense_Mutation p.N453K 0.18 deleterious(0.04) benign(0.446) TCGA-55-7570-01 10 129046299 129046299 A G DOCK1 Missense_Mutation p.I938V 0.14 tolerated(0.06) benign(0.031) TCGA-55-7570-01 10 129899921 129899921 T C MKI67 Silent p.E3102E 0.14 TCGA-55-7570-01 10 135352425 135352425 G T CYP2E1 Missense_Mutation p.C480F 0.61 deleterious(0.05) possibly_damaging(0.805) TCGA-55-7570-01 10 33510716 33510716 G A NRP1 Nonsense_Mutation p.R405* 0.31 TCGA-55-7570-01 10 37440988 37440988 A G ANKRD30A Missense_Mutation p.D493G 0.28 tolerated(0.4) benign(0.036) TCGA-55-7570-01 10 38660067 38660067 C A HSD17B7P2 RNA 0.28 TCGA-55-7570-01 10 45907757 45907757 A G ALOX5 Missense_Mutation p.K184E 0.30 tolerated(0.25) benign(0.005) TCGA-55-7570-01 10 50724295 50724295 T - ERCC6-PGBD3 Frame_Shift_Del p.K757Sfs*87 0.30 TCGA-55-7570-01 10 50857604 50857604 C G CHAT Missense_Mutation p.P478R 0.20 deleterious(0.03) probably_damaging(0.914) TCGA-55-7570-01 10 51584703 51584703 A C NCOA4 Missense_Mutation p.S284R 0.25 tolerated(0.32) possibly_damaging(0.776) TCGA-55-7570-01 10 60123428 60123428 T C UBE2D1 Silent p.Y60Y 0.38 TCGA-55-7570-01 10 70696766 70696766 G A DDX50 Missense_Mutation p.G557D 0.23 deleterious(0.03) possibly_damaging(0.636) TCGA-55-7570-01 10 73270967 73270967 G C CDH23-AS1 Intron 0.16 TCGA-55-7570-01 10 7608072 7608072 C T ITIH5 Silent p.P816P 0.30 TCGA-55-7570-01 10 85984376 85984376 C A LRIT2 Missense_Mutation p.W202L 0.27 deleterious(0) probably_damaging(1) TCGA-55-7570-01 10 97099020 97099020 G T SORBS1 Missense_Mutation p.T912K 0.23 deleterious(0) probably_damaging(0.974) TCGA-55-7570-01 11 100061877 100061877 G A CNTN5 Missense_Mutation p.G534R 0.25 deleterious(0) possibly_damaging(0.897) TCGA-55-7570-01 11 1093566 1093566 C A MUC2 Silent p.T1795T 0.43 TCGA-55-7570-01 11 113857651 113857651 G T HTR3A Missense_Mutation p.A379S 0.24 tolerated(0.6) benign(0.015) TCGA-55-7570-01 11 114453234 114453234 C T NXPE4 Silent p.V202V 0.09 TCGA-55-7570-01 11 117789304 117789304 G C TMPRSS13 Missense_Mutation p.P91A 0.29 tolerated_low_confidence(0.11) benign(0.008) TCGA-55-7570-01 11 124743700 124743700 T A ROBO3 Missense_Mutation p.W576R 0.14 deleterious(0) probably_damaging(1) TCGA-55-7570-01 11 124743984 124743984 A T ROBO3 Silent p.T601T 0.18 TCGA-55-7570-01 11 125448120 125448120 G T EI24 Silent p.V136V 0.21 TCGA-55-7570-01 11 126081478 126081478 C G RPUSD4 Missense_Mutation p.G19A 0.22 tolerated_low_confidence(0.67) benign(0.021) TCGA-55-7570-01 11 1467069 1467069 C T BRSK2 Silent p.L432L 0.30 TCGA-55-7570-01 11 17554887 17554887 A C USH1C Intron 0.38 TCGA-55-7570-01 11 18765647 18765647 G T PTPN5 Nonsense_Mutation p.S66* 0.42 TCGA-55-7570-01 11 22276990 22276990 A T ANO5 Missense_Mutation p.E418D 0.37 tolerated(0.1) possibly_damaging(0.771) TCGA-55-7570-01 11 22396358 22396358 G T SLC17A6 Nonsense_Mutation p.G367* 0.33 TCGA-55-7570-01 11 57958025 57958025 C G OR9Q2 Silent p.L21L 0.15 TCGA-55-7570-01 11 5906110 5906110 C A OR52E4 Silent p.I196I 0.30 TCGA-55-7570-01 11 59831757 59831757 C T MS4A3 Missense_Mutation p.S106F 0.08 deleterious(0) probably_damaging(0.99) TCGA-55-7570-01 11 61502413 61502413 G T DAGLA Missense_Mutation p.R356L 0.30 deleterious(0.01) probably_damaging(0.991) TCGA-55-7570-01 11 63486197 63486197 G C RTN3 Missense_Mutation p.D75H 0.24 tolerated_low_confidence(0.06) benign(0.029) TCGA-55-7570-01 11 64707202 64707202 G T C11orf85 Missense_Mutation p.S195Y 0.32 tolerated_low_confidence(0.07) possibly_damaging(0.729) TCGA-55-7570-01 11 65810462 65810463 GC - GAL3ST3 Frame_Shift_Del p.A271Rfs*97 0.33 TCGA-55-7570-01 11 7091676 7091676 A T NLRP14 Silent p.L1045L 0.32 TCGA-55-7570-01 11 73020903 73020903 G T ARHGEF17 Missense_Mutation p.S407I 0.23 deleterious_low_confidence(0.03) benign(0.034) TCGA-55-7570-01 11 76830197 76830197 A G CAPN5 Missense_Mutation p.K430R 0.36 tolerated(0.26) benign(0.019) TCGA-55-7570-01 11 788546 788546 G T CEND1 Missense_Mutation p.P11T 0.44 tolerated_low_confidence(0.09) probably_damaging(0.958) TCGA-55-7570-01 11 89896504 89896504 C A NAALAD2 Silent p.R368R 0.25 TCGA-55-7570-01 11 92495040 92495040 G T FAT3 Missense_Mutation p.G1230C 0.25 probably_damaging(0.995) TCGA-55-7570-01 11 94759337 94759337 C A KDM4E Missense_Mutation p.P206T 0.18 deleterious(0) probably_damaging(0.996) TCGA-55-7570-01 12 103245481 103245481 A T PAH Missense_Mutation p.F299Y 0.25 deleterious(0.01) probably_damaging(1) TCGA-55-7570-01 12 113442796 113442796 G T OAS2 Missense_Mutation p.V413L 0.18 deleterious(0.02) benign(0.307) TCGA-55-7570-01 12 113546025 113546025 A T RASAL1 Missense_Mutation p.D460E 0.15 tolerated(0.18) benign(0.119) TCGA-55-7570-01 12 121009089 121009089 G T RNF10 Missense_Mutation p.A713S 0.30 deleterious(0.01) possibly_damaging(0.852) TCGA-55-7570-01 12 124281263 124281263 C T DNAH10 Missense_Mutation p.H565Y 0.39 benign(0.008) TCGA-55-7570-01 12 125396740 125396740 C G UBC Silent p.V526V 0.21 TCGA-55-7570-01 12 125397905 125397905 T C UBC Missense_Mutation p.Q138R 0.24 tolerated(0.11) probably_damaging(0.923) TCGA-55-7570-01 12 130921588 130921588 G A RIMBP2 Silent p.H618H 0.38 TCGA-55-7570-01 12 132401562 132401562 G T ULK1 Missense_Mutation p.D713Y 0.31 tolerated(0.14) possibly_damaging(0.798) TCGA-55-7570-01 12 14796505 14796505 G C GUCY2C Intron 0.15 TCGA-55-7570-01 12 31132537 31132537 C A TSPAN11 Missense_Mutation p.L130M 0.21 tolerated(1) benign(0.144) TCGA-55-7570-01 12 41410667 41410667 A G CNTN1 Missense_Mutation p.K790E 0.26 tolerated(0.05) possibly_damaging(0.622) TCGA-55-7570-01 12 4554430 4554430 C A FGF6 Missense_Mutation p.D103Y 0.31 deleterious(0) probably_damaging(0.923) TCGA-55-7570-01 12 45803164 45803164 A G ANO6 Silent p.R656R 0.33 TCGA-55-7570-01 12 48379325 48379325 C T COL2A1 Missense_Mutation p.G576S 0.30 possibly_damaging(0.884) TCGA-55-7570-01 12 53225407 53225407 G A KRT79 Missense_Mutation p.R161W 0.26 deleterious(0) probably_damaging(0.985) TCGA-55-7570-01 12 56213140 56213140 C A ORMDL2 Missense_Mutation p.F63L 0.30 tolerated(0.4) benign(0.004) TCGA-55-7570-01 12 57843177 57843177 C G INHBC Missense_Mutation p.T144S 0.24 tolerated(0.93) benign(0.005) TCGA-55-7570-01 12 57843178 57843178 C A INHBC Silent p.T144T 0.26 TCGA-55-7570-01 12 6976815 6976815 C G TPI1 Missense_Mutation p.L66V 0.24 deleterious(0.01) benign(0.295) TCGA-55-7570-01 12 75893577 75893577 G C KRR1 3'UTR 0.11 TCGA-55-7570-01 12 7651686 7651686 C A CD163 Missense_Mutation p.D186Y 0.25 deleterious(0.03) probably_damaging(0.998) TCGA-55-7570-01 12 85674209 85674209 C A ALX1 Missense_Mutation p.P57H 0.21 tolerated_low_confidence(0.08) benign(0) TCGA-55-7570-01 12 85677392 85677392 C G ALX1 Missense_Mutation p.T90S 0.19 tolerated(0.35) benign(0.001) TCGA-55-7570-01 12 9021196 9021196 C A A2ML1 Missense_Mutation p.F1375L 0.26 deleterious(0) probably_damaging(0.996) TCGA-55-7570-01 12 97102515 97102515 G C C12orf55 Missense_Mutation p.V2220L 0.30 tolerated(0.09) benign(0.001) TCGA-55-7570-01 13 25882070 25882071 - GC NUPL1 Frame_Shift_Ins p.G79Afs*8 0.11 TCGA-55-7570-01 13 36900714 36900714 G A SPG20 Missense_Mutation p.S429L 0.41 deleterious(0) benign(0.314) TCGA-55-7570-01 13 53421705 53421705 G T PCDH8 Silent p.T289T 0.44 TCGA-55-7570-01 14 101200908 101200908 C T DLK1 Missense_Mutation p.P276L 0.35 deleterious(0.01) possibly_damaging(0.869) TCGA-55-7570-01 14 102906783 102906783 C T TECPR2 Silent p.L863L 0.16 TCGA-55-7570-01 14 105411033 105411033 C G AHNAK2 Silent p.L3585L 0.19 TCGA-55-7570-01 14 20295782 20295782 C T OR4N2 Missense_Mutation p.L59F 0.26 deleterious(0) probably_damaging(0.924) TCGA-55-7570-01 14 20404508 20404508 G T OR4K1 Missense_Mutation p.R228M 0.27 deleterious(0.01) possibly_damaging(0.608) TCGA-55-7570-01 14 20811820 20811820 G A PARP2 Missense_Mutation p.R7Q 0.40 tolerated_low_confidence(0.48) unknown(0) TCGA-55-7570-01 14 23588250 23588250 T A CEBPE Silent p.P17P 0.31 TCGA-55-7570-01 14 23882061 23882061 A T MYH7 3'UTR 0.24 TCGA-55-7570-01 14 30100163 30100163 C A PRKD1 Missense_Mutation p.G486V 0.24 deleterious(0.02) possibly_damaging(0.853) TCGA-55-7570-01 14 30100164 30100164 C A PRKD1 Missense_Mutation p.G486W 0.24 deleterious(0) probably_damaging(0.988) TCGA-55-7570-01 14 58060707 58060707 T A SLC35F4 Missense_Mutation p.Q116L 0.29 tolerated(0.07) benign(0) TCGA-55-7570-01 14 61747148 61747148 G A TMEM30B Missense_Mutation p.P240S 0.28 tolerated(0.18) benign(0.048) TCGA-55-7570-01 14 64469988 64469988 T A SYNE2 Missense_Mutation p.V1446E 0.18 possibly_damaging(0.857) TCGA-55-7570-01 14 64537567 64537567 G C SYNE2 Missense_Mutation p.G3546R 0.19 benign(0.009) TCGA-55-7570-01 14 65007679 65007679 A T HSPA2 Missense_Mutation p.T38S 0.23 deleterious_low_confidence(0) possibly_damaging(0.64) TCGA-55-7570-01 14 68878244 68878244 G A RAD51B Silent p.Q319Q 0.16 TCGA-55-7570-01 14 72055542 72055542 C T SIPA1L1 Missense_Mutation p.S318L 0.23 tolerated(0.73) benign(0.002) TCGA-55-7570-01 14 94038350 94038350 G C UNC79 Missense_Mutation p.E445D 0.30 tolerated(0.8) benign(0.021) TCGA-55-7570-01 14 94545588 94545588 C T DDX24 Silent p.Q167Q 0.15 TCGA-55-7570-01 14 95081023 95081023 C - SERPINA3 Frame_Shift_Del p.A83Pfs*14 0.19 TCGA-55-7570-01 15 20495380 20495380 G A CHEK2P2 RNA 0.10 TCGA-55-7570-01 15 23444053 23444053 G T AC100757.1 5'Flank 0.11 TCGA-55-7570-01 15 25925388 25925388 T C ATP10A Missense_Mutation p.N1249S 0.30 tolerated(0.32) benign(0.095) TCGA-55-7570-01 15 28443806 28443806 C A HERC2 Missense_Mutation p.C2609F 0.29 possibly_damaging(0.581) TCGA-55-7570-01 15 28482208 28482208 G C HERC2 Missense_Mutation p.L1302V 0.25 benign(0.158) TCGA-55-7570-01 15 28900970 28900970 C T HERC2P9 RNA 0.39 TCGA-55-7570-01 15 34030787 34030787 A G RYR3 Missense_Mutation p.H2551R 0.21 benign(0.007) TCGA-55-7570-01 15 34355599 34355599 G T CHRM5 Silent p.L227L 0.35 TCGA-55-7570-01 15 43307940 43307940 T A UBR1 Missense_Mutation p.Y1052F 0.26 tolerated(1) probably_damaging(0.997) TCGA-55-7570-01 15 45402112 45402112 G A DUOX2 Silent p.V369V 0.25 TCGA-55-7570-01 15 49031027 49031027 C A CEP152 Nonsense_Mutation p.G1518* 0.21 TCGA-55-7570-01 15 59548495 59548495 C A MYO1E Missense_Mutation p.C107F 0.23 deleterious(0) probably_damaging(0.999) TCGA-55-7570-01 15 63031593 63031593 A T TLN2 Missense_Mutation p.N1245I 0.20 deleterious(0.01) benign(0.27) TCGA-55-7570-01 15 73615942 73615942 G T HCN4 Missense_Mutation p.S831Y 0.27 tolerated_low_confidence(0.06) unknown(0) TCGA-55-7570-01 15 73624565 73624565 G A HCN4 Silent p.L426L 0.13 TCGA-55-7570-01 15 77057679 77057679 T A SCAPER Nonsense_Mutation p.R538* 0.23 TCGA-55-7570-01 15 79057023 79057023 C A ADAMTS7 Silent p.A1431A 0.33 TCGA-55-7570-01 15 84651118 84651118 G T ADAMTSL3 Missense_Mutation p.R913L 0.26 deleterious(0) probably_damaging(0.999) TCGA-55-7570-01 15 89867404 89867404 C G POLG Silent p.L668L 0.25 TCGA-55-7570-01 15 91479205 91479205 A T UNC45A Silent p.A81A 0.16 TCGA-55-7570-01 16 11097028 11097028 G C CLEC16A Missense_Mutation p.R390T 0.22 tolerated(0.2) benign(0.184) TCGA-55-7570-01 16 14346323 14346323 C G MKL2 Missense_Mutation p.I839M 0.30 tolerated(0.18) possibly_damaging(0.867) TCGA-55-7570-01 16 15690412 15690412 T A KIAA0430 3'UTR 0.21 TCGA-55-7570-01 16 18882025 18882025 T A SMG1 Missense_Mutation p.D800V 0.36 deleterious(0) probably_damaging(0.996) TCGA-55-7570-01 16 19548127 19548127 G T CCP110 Missense_Mutation p.R379L 0.30 deleterious(0) benign(0.038) TCGA-55-7570-01 16 2550821 2550821 G C TBC1D24 Missense_Mutation p.Q514H 0.31 tolerated(0.42) benign(0.027) TCGA-55-7570-01 16 26147248 26147248 C A HS3ST4 Silent p.S350S 0.18 TCGA-55-7570-01 16 26147249 26147249 C G HS3ST4 Missense_Mutation p.Q351E 0.18 deleterious(0) probably_damaging(0.998) TCGA-55-7570-01 16 27459815 27459815 C T IL21R Intron 0.16 TCGA-55-7570-01 16 27506573 27506573 C A GTF3C1 Missense_Mutation p.G864V 0.26 tolerated(0.16) benign(0.008) TCGA-55-7570-01 16 28549480 28549480 T G NUPR1 Missense_Mutation p.T55P 0.24 tolerated(0.33) possibly_damaging(0.702) TCGA-55-7570-01 16 30038023 30038023 G T FAM57B Missense_Mutation p.S117R 0.36 tolerated(0.26) possibly_damaging(0.632) TCGA-55-7570-01 16 33020522 33020522 C - IGHV3OR16-8 Frame_Shift_Del p.V11Lfs*4 0.09 TCGA-55-7570-01 16 3304331 3304331 G T MEFV Missense_Mutation p.T246N 0.25 tolerated(0.06) benign(0.133) TCGA-55-7570-01 16 48142410 48142410 G T ABCC12 Missense_Mutation p.S771Y 0.26 deleterious(0.04) benign(0.017) TCGA-55-7570-01 16 49672370 49672370 G A ZNF423 Silent p.F231F 0.22 TCGA-55-7570-01 16 49672436 49672436 G C ZNF423 Silent p.L209L 0.19 TCGA-55-7570-01 16 55903594 55903594 G T CES5A Silent p.S189S 0.33 TCGA-55-7570-01 16 56917970 56917970 C A SLC12A3 Missense_Mutation p.P560H 0.15 deleterious(0) probably_damaging(0.997) TCGA-55-7570-01 16 57254731 57254731 A G RSPRY1 Missense_Mutation p.Y330C 0.12 deleterious(0.03) probably_damaging(0.998) TCGA-55-7570-01 16 67304976 67304976 C T SLC9A5 Missense_Mutation p.R852C 0.16 deleterious_low_confidence(0.02) benign(0.232) TCGA-55-7570-01 16 70841741 70841741 G T HYDIN Nonsense_Mutation p.Y5036* 0.17 TCGA-55-7570-01 16 74976686 74976686 T G WDR59 Missense_Mutation p.N162H 0.30 tolerated(0.44) benign(0.003) TCGA-55-7570-01 16 9012974 9012974 C A USP7 Missense_Mutation p.G212C 0.26 deleterious(0) probably_damaging(1) TCGA-55-7570-01 17 10628394 10628394 G A TMEM220 Missense_Mutation p.A74V 0.35 tolerated(0.14) possibly_damaging(0.814) TCGA-55-7570-01 17 2196257 2196257 C A SMG6 Missense_Mutation p.L722F 0.23 deleterious(0) probably_damaging(0.998) TCGA-55-7570-01 17 33496867 33496867 G C UNC45B Missense_Mutation p.K488N 0.28 deleterious(0) probably_damaging(0.997) TCGA-55-7570-01 17 36358981 36358981 C A RP11-1407O15.2 Missense_Mutation p.R237L 0.19 TCGA-55-7570-01 17 38122058 38122058 C T GSDMA Silent p.L40L 0.69 TCGA-55-7570-01 17 38122578 38122578 G A GSDMA Missense_Mutation p.D94N 0.28 tolerated(0.21) possibly_damaging(0.903) TCGA-55-7570-01 17 3845945 3845945 G A ATP2A3 Silent p.P500P 0.20 TCGA-55-7570-01 17 40767131 40767131 G C TUBG1 3'UTR 0.53 TCGA-55-7570-01 17 41004694 41004694 C G AOC3 Nonsense_Mutation p.S445* 0.21 TCGA-55-7570-01 17 41246294 41246294 C G BRCA1 Missense_Mutation p.E418D 0.50 tolerated(0.25) benign(0.331) TCGA-55-7570-01 17 41341637 41341637 G C NBR1 Missense_Mutation p.E171D 0.34 tolerated(0.09) probably_damaging(0.979) TCGA-55-7570-01 17 42330560 42330560 G C SLC4A1 Missense_Mutation p.T746S 0.54 tolerated(0.05) benign(0.005) TCGA-55-7570-01 17 4461429 4461429 C T GGT6 Missense_Mutation p.E455K 0.17 tolerated(0.78) benign(0.023) TCGA-55-7570-01 17 51900598 51900598 C A KIF2B Silent p.G68G 0.44 TCGA-55-7570-01 17 51900665 51900665 C G KIF2B Missense_Mutation p.P91A 0.46 tolerated(0.16) benign(0.002) TCGA-55-7570-01 17 54558038 54558038 G C ANKFN1 Missense_Mutation p.W653C 0.32 deleterious(0) probably_damaging(0.974) TCGA-55-7570-01 17 57963583 57963583 C A TUBD1 Missense_Mutation p.A61S 0.52 deleterious(0) probably_damaging(0.962) TCGA-55-7570-01 17 59853777 59853777 G C BRIP1 Missense_Mutation p.F694L 0.25 deleterious(0) probably_damaging(1) TCGA-55-7570-01 17 61995762 61995762 C G GH1 Missense_Mutation p.A39P 0.54 deleterious(0) probably_damaging(0.996) TCGA-55-7570-01 17 62801120 62801120 C T PLEKHM1P RNA 0.11 TCGA-55-7570-01 17 62856432 62856432 C A LRRC37A3 Missense_Mutation p.A1278S 0.57 tolerated(0.09) benign(0.004) TCGA-55-7570-01 17 7578442 7578442 T C TP53 Missense_Mutation p.Y163C 0.58 deleterious(0) probably_damaging(0.999) TCGA-55-7570-01 17 8134633 8134633 G C CTC1 Nonsense_Mutation p.S877* 0.24 TCGA-55-7570-01 18 346704 346704 G A COLEC12 Silent p.A306A 0.40 TCGA-55-7570-01 18 47518664 47518664 G A MYO5B Silent p.V250V 0.21 TCGA-55-7570-01 18 51818291 51818291 C A POLI Silent p.T429T 0.23 TCGA-55-7570-01 18 58038732 58038732 A T MC4R Missense_Mutation p.F284Y 0.23 deleterious(0) probably_damaging(0.987) TCGA-55-7570-01 18 60985567 60985567 G A BCL2 Silent p.D111D 0.23 TCGA-55-7570-01 18 71740725 71740725 T - FBXO15 Frame_Shift_Del p.I502Sfs*20 0.17 TCGA-55-7570-01 19 1913115 1913115 G T ADAT3 Nonsense_Mutation p.E357* 0.33 TCGA-55-7570-01 19 20116914 20116914 G A ZNF682 Missense_Mutation p.S466L 0.32 deleterious(0.02) probably_damaging(0.987) TCGA-55-7570-01 19 22363214 22363214 G A ZNF676 Silent p.S435S 0.48 TCGA-55-7570-01 19 22952127 22952127 C A ZNF99 Splice_Site p.X2_splice 0.35 TCGA-55-7570-01 19 34262337 34262337 G T CHST8 Missense_Mutation p.R50S 0.23 tolerated(0.36) benign(0.008) TCGA-55-7570-01 19 36349766 36349766 G T KIRREL2 Missense_Mutation p.Q174H 0.37 deleterious(0.03) possibly_damaging(0.617) TCGA-55-7570-01 19 40886710 40886710 A T HIPK4 Silent p.A396A 0.26 TCGA-55-7570-01 19 4207605 4207605 G T ANKRD24 Splice_Site p.X215_splice 0.38 TCGA-55-7570-01 19 43258608 43258608 G T PSG8 Missense_Mutation p.L374I 0.43 tolerated(0.07) possibly_damaging(0.705) TCGA-55-7570-01 19 43429935 43429935 G T PSG7 Silent p.V411V 0.41 TCGA-55-7570-01 19 45179599 45179599 G T CEACAM19 Missense_Mutation p.A161S 0.41 deleterious(0.03) benign(0.382) TCGA-55-7570-01 19 51535216 51535216 G C KLK12 Missense_Mutation p.Q125E 0.40 deleterious(0.01) benign(0.157) TCGA-55-7570-01 19 55451463 55451463 G A NLRP7 Silent p.L242L 0.47 TCGA-55-7570-01 19 58231901 58231901 C T ZNF671 Missense_Mutation p.R518Q 0.44 tolerated(1) benign(0.025) TCGA-55-7570-01 19 58371600 58371600 C G ZNF587 3'UTR 0.46 TCGA-55-7570-01 19 831926 831926 G A AZU1 3'UTR 0.29 TCGA-55-7570-01 1 103496791 103496791 G C COL11A1 Missense_Mutation p.Q221E 0.32 probably_damaging(0.999) TCGA-55-7570-01 1 119427912 119427912 C G TBX15 Missense_Mutation p.D312H 0.45 tolerated(0.12) possibly_damaging(0.879) TCGA-55-7570-01 1 12887380 12887380 C T PRAMEF11 Silent p.L159L 0.22 TCGA-55-7570-01 1 142713296 142713296 G A RP11-417J8.6 RNA 0.33 TCGA-55-7570-01 1 145415334 145415334 G C HFE2 Silent p.L51L 0.22 TCGA-55-7570-01 1 150131751 150131751 G A PLEKHO1 3'UTR 0.45 TCGA-55-7570-01 1 152749017 152749017 G A LCE1F Missense_Mutation p.G57E 0.14 deleterious_low_confidence(0.03) unknown(0) TCGA-55-7570-01 1 153430296 153430296 C A S100A7 Missense_Mutation p.G98W 0.16 deleterious(0.02) probably_damaging(0.948) TCGA-55-7570-01 1 153750339 153750339 G A SLC27A3 Missense_Mutation p.R427Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-55-7570-01 1 156263975 156263975 T C C1orf85 Missense_Mutation p.H211R 0.36 deleterious(0) probably_damaging(0.994) TCGA-55-7570-01 1 157659607 157659607 G T FCRL3 Silent p.A597A 0.34 TCGA-55-7570-01 1 158606553 158606553 T A SPTA1 Splice_Site p.X1730_splice 0.26 TCGA-55-7570-01 1 158669631 158669631 C A OR6K2 Missense_Mutation p.W271L 0.29 tolerated(1) benign(0.035) TCGA-55-7570-01 1 158736070 158736070 G T OR6N1 Missense_Mutation p.L135I 0.26 tolerated(1) benign(0.002) TCGA-55-7570-01 1 158736071 158736071 G T OR6N1 Silent p.T134T 0.26 TCGA-55-7570-01 1 175355328 175355328 G A TNR Silent p.G539G 0.25 TCGA-55-7570-01 1 176762719 176762719 G T PAPPA2 Missense_Mutation p.V1682L 0.22 tolerated(0.69) benign(0.004) TCGA-55-7570-01 1 176913026 176913026 C A ASTN1 Splice_Site p.X793_splice 0.21 TCGA-55-7570-01 1 179523671 179523671 G T NPHS2 Intron 0.28 TCGA-55-7570-01 1 179620127 179620127 C G TDRD5 Missense_Mutation p.N642K 0.18 tolerated(0.12) benign(0.061) TCGA-55-7570-01 1 179834277 179834277 C T IFRG15 Missense_Mutation p.G12E 0.25 deleterious_low_confidence(0.04) probably_damaging(0.988) TCGA-55-7570-01 1 18023899 18023899 G T ARHGEF10L 3'UTR 0.13 TCGA-55-7570-01 1 181452944 181452944 A T CACNA1E Missense_Mutation p.S22C 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.7) TCGA-55-7570-01 1 196716381 196716381 C T CFH Missense_Mutation p.H1212Y 0.23 tolerated(0.14) benign(0.029) TCGA-55-7570-01 1 196797209 196797209 G T CFHR1 Missense_Mutation p.C147F 0.47 deleterious(0) benign(0.158) TCGA-55-7570-01 1 196879571 196879571 C A CFHR4 Nonsense_Mutation p.C319* 0.62 TCGA-55-7570-01 1 196928125 196928125 C A CFHR2 Missense_Mutation p.S243Y 0.24 tolerated(1) benign(0) TCGA-55-7570-01 1 198671624 198671624 G T PTPRC Missense_Mutation p.R183L 0.24 tolerated(0.5) benign(0.011) TCGA-55-7570-01 1 203139527 203139527 C A MYBPH Missense_Mutation p.D329Y 0.25 deleterious(0) possibly_damaging(0.839) TCGA-55-7570-01 1 204955197 204955197 G A NFASC Intron 0.17 TCGA-55-7570-01 1 207085160 207085160 T C FAIM3 Missense_Mutation p.T209A 0.19 tolerated(0.06) benign(0.062) TCGA-55-7570-01 1 207240959 207240959 C T PFKFB2 Missense_Mutation p.R250C 0.31 possibly_damaging(0.869) TCGA-55-7570-01 1 223408349 223408349 G A SUSD4 Intron 0.23 TCGA-55-7570-01 1 228111886 228111886 C T WNT9A Missense_Mutation p.D190N 0.22 deleterious(0) probably_damaging(0.94) TCGA-55-7570-01 1 235384974 235384974 C A ARID4B Nonsense_Mutation p.E357* 0.25 TCGA-55-7570-01 1 24078002 24078002 G T TCEB3 Missense_Mutation p.D329Y 0.19 deleterious(0.05) possibly_damaging(0.526) TCGA-55-7570-01 1 240978031 240978031 G T RGS7 Nonsense_Mutation p.S277* 0.26 TCGA-55-7570-01 1 247902064 247902064 G T OR14K1 Missense_Mutation p.D50Y 0.18 deleterious(0) probably_damaging(0.992) TCGA-55-7570-01 1 248790092 248790092 C - OR2T11 Frame_Shift_Del p.G113Afs*15 0.19 TCGA-55-7570-01 1 34666628 34666628 T C C1orf94 Missense_Mutation p.L422P 0.30 deleterious(0.03) benign(0.003) TCGA-55-7570-01 1 37346315 37346315 G T GRIK3 Missense_Mutation p.A157D 0.26 tolerated(0.48) benign(0.019) TCGA-55-7570-01 1 38265990 38265990 G A MANEAL 3'UTR 0.33 TCGA-55-7570-01 1 4834617 4834617 C A AJAP1 Intron 0.33 TCGA-55-7570-01 1 64608317 64608317 T A ROR1 Nonsense_Mutation p.C386* 0.22 TCGA-55-7570-01 1 75685018 75685018 G A SLC44A5 Missense_Mutation p.T397I 0.32 deleterious(0) possibly_damaging(0.612) TCGA-55-7570-01 1 7723720 7723720 C A CAMTA1 Missense_Mutation p.D371E 0.29 tolerated(0.11) probably_damaging(0.99) TCGA-55-7570-01 1 86590553 86590553 C G COL24A1 Missense_Mutation p.G489A 0.23 tolerated(0.07) probably_damaging(1) TCGA-55-7570-01 1 99771292 99771292 C A LPPR4 Missense_Mutation p.H340N 0.26 tolerated(0.56) benign(0.021) TCGA-55-7570-01 20 22563390 22563390 C A FOXA2 Missense_Mutation p.A164S 0.28 deleterious(0) probably_damaging(0.999) TCGA-55-7570-01 20 3321201 3321201 C A C20orf194 Nonsense_Mutation p.G311* 0.23 TCGA-55-7570-01 20 368838 368838 G C TRIB3 Missense_Mutation p.V62L 0.36 tolerated(0.6) benign(0.003) TCGA-55-7570-01 20 37534654 37534654 C T PPP1R16B Missense_Mutation p.L247F 0.22 tolerated(0.14) possibly_damaging(0.701) TCGA-55-7570-01 20 45644860 45644860 G C EYA2 Missense_Mutation p.Q113H 0.30 deleterious(0) probably_damaging(0.999) TCGA-55-7570-01 20 47269243 47269243 C T PREX1 Missense_Mutation p.G783D 0.31 tolerated(0.52) possibly_damaging(0.792) TCGA-55-7570-01 20 62193280 62193280 T C HELZ2 Missense_Mutation p.Q2196R 0.62 tolerated(0.07) benign(0.022) TCGA-55-7570-01 21 26979749 26979749 G C MRPL39 Silent p.L13L 0.36 TCGA-55-7570-01 21 28338125 28338125 C G ADAMTS5 Missense_Mutation p.E196Q 0.71 tolerated(0.24) possibly_damaging(0.866) TCGA-55-7570-01 21 39493393 39493393 G C DSCR4 5'UTR 0.45 TCGA-55-7570-01 21 40792770 40792770 C G LCA5L Splice_Site p.X280_splice 0.15 TCGA-55-7570-01 21 45732017 45732017 C G PFKL Missense_Mutation p.C89W 0.44 deleterious(0) probably_damaging(0.998) TCGA-55-7570-01 21 9907335 9907335 A T TEKT4P2 RNA 0.10 TCGA-55-7570-01 22 22661516 22661516 C T BMS1P20 RNA 0.11 TCGA-55-7570-01 22 23101612 23101612 G T IGLV2-14 Missense_Mutation p.G89V 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.533) TCGA-55-7570-01 22 23915743 23915743 G A IGLL1 Silent p.L118L 0.23 TCGA-55-7570-01 2 113305043 113305043 A - POLR1B Frame_Shift_Del p.K131Sfs*11 0.25 TCGA-55-7570-01 2 124783078 124783078 G T CNTNAP5 5'UTR 0.23 TCGA-55-7570-01 2 135738850 135738850 C A MAP3K19 Missense_Mutation p.R1154L 0.28 deleterious(0) probably_damaging(0.947) TCGA-55-7570-01 2 141283475 141283475 G C LRP1B Missense_Mutation p.P2655R 0.13 probably_damaging(0.942) TCGA-55-7570-01 2 141283476 141283476 G T LRP1B Missense_Mutation p.P2655T 0.13 possibly_damaging(0.876) TCGA-55-7570-01 2 141571371 141571371 T A LRP1B Silent p.L1738L 0.27 TCGA-55-7570-01 2 1497633 1497633 A T TPO Missense_Mutation p.S610C 0.46 tolerated(0.06) possibly_damaging(0.762) TCGA-55-7570-01 2 152470789 152470789 C A NEB Splice_Site p.X3867_splice 0.26 TCGA-55-7570-01 2 167328887 167328887 C A SCN7A Missense_Mutation p.G171V 0.35 deleterious(0.02) probably_damaging(0.981) TCGA-55-7570-01 2 167760007 167760007 G A XIRP2 Silent p.Q5Q 0.12 TCGA-55-7570-01 2 168099611 168099611 T G XIRP2 Missense_Mutation p.L570R 0.36 probably_damaging(1) TCGA-55-7570-01 2 168103167 168103167 G A XIRP2 Silent p.L1755L 0.24 TCGA-55-7570-01 2 171700615 171700615 G C GAD1 Missense_Mutation p.M233I 0.18 deleterious(0) probably_damaging(0.986) TCGA-55-7570-01 2 176983859 176983859 G A HOXD10 Missense_Mutation p.R308K 0.20 deleterious(0.01) probably_damaging(0.987) TCGA-55-7570-01 2 177193077 177193077 C G MTX2 Nonsense_Mutation p.Y114* 0.21 TCGA-55-7570-01 2 178634101 178634101 C A PDE11A Missense_Mutation p.V580L 0.24 deleterious(0.01) benign(0.117) TCGA-55-7570-01 2 179642677 179642677 T C TTN Missense_Mutation p.R1412G 0.19 TCGA-55-7570-01 2 189975154 189975154 G A COL5A2 Missense_Mutation p.A40V 0.23 possibly_damaging(0.501) TCGA-55-7570-01 2 198631311 198631311 C A BOLL Missense_Mutation p.S178I 0.16 tolerated(0.09) probably_damaging(0.947) TCGA-55-7570-01 2 209045510 209045510 T C C2orf80 Missense_Mutation p.I109V 0.36 tolerated(0.06) benign(0.019) TCGA-55-7570-01 2 210574780 210574780 C A MAP2 Silent p.T1625T 0.22 TCGA-55-7570-01 2 218712763 218712763 G A TNS1 Missense_Mutation p.S701F 0.18 deleterious(0) probably_damaging(0.998) TCGA-55-7570-01 2 227661394 227661394 G A IRS1 Silent p.N687N 0.26 TCGA-55-7570-01 2 227920778 227920778 C G COL4A4 Missense_Mutation p.G867R 0.21 unknown(0) TCGA-55-7570-01 2 235951777 235951777 G C SH3BP4 Silent p.R788R 0.23 TCGA-55-7570-01 2 26257456 26257456 A G RAB10 5'UTR 0.35 TCGA-55-7570-01 2 29404730 29404730 G T CLIP4 Missense_Mutation p.G697W 0.39 deleterious(0) probably_damaging(1) TCGA-55-7570-01 2 33787861 33787861 G C RASGRP3 3'UTR 0.29 TCGA-55-7570-01 2 3391920 3391920 G T TRAPPC12 Nonsense_Mutation p.E176* 0.25 TCGA-55-7570-01 2 3391923 3391923 C T TRAPPC12 Missense_Mutation p.P177S 0.24 tolerated_low_confidence(0.63) benign(0.009) TCGA-55-7570-01 2 44508034 44508034 G A SLC3A1 Missense_Mutation p.G204S 0.21 deleterious(0) probably_damaging(0.997) TCGA-55-7570-01 2 56603008 56603008 G A CCDC85A Missense_Mutation p.A504T 0.30 tolerated_low_confidence(0.11) benign(0.007) TCGA-55-7570-01 2 71036473 71036473 A G CLEC4F Missense_Mutation p.I567T 0.18 tolerated_low_confidence(0.84) benign(0) TCGA-55-7570-01 2 73441457 73441457 C T SMYD5 Silent p.V21V 0.25 TCGA-55-7570-01 2 73993544 73993544 C T DUSP11 Splice_Site p.X312_splice 0.25 TCGA-55-7570-01 2 88383986 88383986 G T SMYD1 Missense_Mutation p.G97W 0.25 deleterious(0) probably_damaging(0.991) TCGA-55-7570-01 2 89976323 89976323 C A IGKV2D-30 Missense_Mutation p.P65Q 0.21 deleterious(0.02) probably_damaging(0.964) TCGA-55-7570-01 2 95539180 95539180 G T TEKT4 Intron 0.30 TCGA-55-7570-01 2 96457997 96457997 A G AC008268.2 RNA 0.19 TCGA-55-7570-01 3 105086291 105086291 C A ALCAM Missense_Mutation p.F13L 0.29 tolerated(0.61) benign(0) TCGA-55-7570-01 3 108102450 108102450 C G MYH15 Missense_Mutation p.G1940R 0.18 deleterious(0.04) benign(0.013) TCGA-55-7570-01 3 108102458 108102458 C G MYH15 Missense_Mutation p.R1937T 0.23 deleterious(0) benign(0.325) TCGA-55-7570-01 3 108300277 108300277 C G KIAA1524 Silent p.T178T 0.29 TCGA-55-7570-01 3 113601626 113601626 G T GRAMD1C Missense_Mutation p.D163Y 0.17 deleterious(0) possibly_damaging(0.903) TCGA-55-7570-01 3 119327669 119327669 C A PLA1A Missense_Mutation p.R110S 0.20 tolerated(0.06) benign(0.159) TCGA-55-7570-01 3 121228900 121228900 C A POLQ Missense_Mutation p.S601I 0.27 deleterious(0.05) benign(0.055) TCGA-55-7570-01 3 125179630 125179631 - A SNX4 Frame_Shift_Ins p.Y310Lfs*13 0.16 TCGA-55-7570-01 3 125297869 125297869 C G OSBPL11 Missense_Mutation p.E142Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-55-7570-01 3 128598589 128598589 G A ACAD9 Missense_Mutation p.G19S 0.34 tolerated(0.51) benign(0) TCGA-55-7570-01 3 130403129 130403129 G C PIK3R4 Nonsense_Mutation p.S1191* 0.25 TCGA-55-7570-01 3 133099203 133099203 C A TMEM108 Silent p.I216I 0.30 TCGA-55-7570-01 3 150290247 150290248 - GCA EIF2A In_Frame_Ins p.E438_E439insA 0.21 TCGA-55-7570-01 3 150644712 150644712 C T CLRN1 3'Flank 0.39 TCGA-55-7570-01 3 158983083 158983083 G A IQCJ Missense_Mutation p.G124E 0.29 tolerated_low_confidence(1) benign(0.001) TCGA-55-7570-01 3 167249022 167249022 G C WDR49 Missense_Mutation p.S348C 0.29 deleterious(0.01) benign(0.401) TCGA-55-7570-01 3 169663679 169663679 C G RP11-379K17.4 RNA 0.26 TCGA-55-7570-01 3 183273205 183273205 G T KLHL6 Missense_Mutation p.D79E 0.23 tolerated(1) benign(0.034) TCGA-55-7570-01 3 185347616 185347616 A T SENP2 Missense_Mutation p.H585L 0.36 deleterious(0) probably_damaging(0.996) TCGA-55-7570-01 3 197408726 197408726 C A KIAA0226 Missense_Mutation p.C724F 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-7570-01 3 36422206 36422206 A T STAC Missense_Mutation p.Q24L 0.35 tolerated(0.35) benign(0.002) TCGA-55-7570-01 3 36873498 36873498 G C TRANK1 Missense_Mutation p.L2482V 0.36 deleterious(0.01) possibly_damaging(0.881) TCGA-55-7570-01 3 39307923 39307923 G T CX3CR1 Silent p.I58I 0.29 TCGA-55-7570-01 3 50137473 50137473 A T RBM5 Missense_Mutation p.K133M 0.25 deleterious(0) probably_damaging(0.998) TCGA-55-7570-01 3 50137474 50137474 G C RBM5 Missense_Mutation p.K133N 0.25 deleterious(0) probably_damaging(0.994) TCGA-55-7570-01 3 87325615 87325615 C A POU1F1 5'UTR 0.39 TCGA-55-7570-01 3 9027454 9027454 C A SRGAP3 Missense_Mutation p.V1017F 0.38 tolerated_low_confidence(0.38) benign(0.051) TCGA-55-7570-01 3 93646163 93646163 T G PROS1 Missense_Mutation p.E55D 0.34 deleterious(0) probably_damaging(1) TCGA-55-7570-01 4 106155823 106155823 G T TET2 Missense_Mutation p.V242L 0.15 tolerated(0.08) benign(0.012) TCGA-55-7570-01 4 106859499 106859499 G A NPNT Missense_Mutation p.D173N 0.24 deleterious(0) benign(0.224) TCGA-55-7570-01 4 110223093 110223093 G C COL25A1 Missense_Mutation p.A28G 0.21 tolerated(0.25) unknown(0) TCGA-55-7570-01 4 114195680 114195680 A T ANK2 Missense_Mutation p.M520L 0.28 probably_damaging(0.915) TCGA-55-7570-01 4 121957465 121957465 G C NDNF Missense_Mutation p.S554C 0.30 tolerated(0.05) probably_damaging(0.992) TCGA-55-7570-01 4 122062978 122062978 T G TNIP3 Missense_Mutation p.E370A 0.08 tolerated(0.07) benign(0.121) TCGA-55-7570-01 4 123301364 123301364 C - ADAD1 Frame_Shift_Del p.K48Rfs*9 0.23 TCGA-55-7570-01 4 145061850 145061850 T G GYPA 5'UTR 0.21 TCGA-55-7570-01 4 146823717 146823717 C G ZNF827 Missense_Mutation p.E232Q 0.32 deleterious(0.01) possibly_damaging(0.637) TCGA-55-7570-01 4 159592889 159592889 G A C4orf46 Missense_Mutation p.S22F 0.31 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-55-7570-01 4 164246538 164246538 C A NPY1R Missense_Mutation p.D358Y 0.36 deleterious(0) probably_damaging(0.984) TCGA-55-7570-01 4 164393900 164393900 C G TKTL2 Silent p.L329L 0.36 TCGA-55-7570-01 4 164534585 164534585 G C MARCH1 Intron 0.38 TCGA-55-7570-01 4 169606657 169606657 C A PALLD Missense_Mutation p.L428I 0.34 deleterious(0.03) probably_damaging(0.933) TCGA-55-7570-01 4 177067163 177067163 G T WDR17 Missense_Mutation p.G540V 0.41 deleterious(0) probably_damaging(1) TCGA-55-7570-01 4 183694726 183694726 C G TENM3 Nonsense_Mutation p.S1665* 0.48 TCGA-55-7570-01 4 186317996 186317996 C T ANKRD37 5'UTR 0.41 TCGA-55-7570-01 4 186578624 186578624 C A SORBS2 Missense_Mutation p.G174V 0.48 tolerated(0.09) probably_damaging(1) TCGA-55-7570-01 4 3134601 3134601 C G HTT Missense_Mutation p.S819C 0.31 probably_damaging(0.99) TCGA-55-7570-01 4 36118683 36118683 C G ARAP2 Silent p.R1346R 0.30 TCGA-55-7570-01 4 39245931 39245931 C A WDR19 Silent p.R829R 0.28 TCGA-55-7570-01 4 41262814 41262814 G T UCHL1 Nonsense_Mutation p.E109* 0.20 TCGA-55-7570-01 4 47663847 47663847 C A CORIN Missense_Mutation p.R539L 0.25 deleterious(0) possibly_damaging(0.872) TCGA-55-7570-01 4 54257292 54257292 A G FIP1L1 Missense_Mutation p.T208A 0.30 tolerated(0.14) benign(0.008) TCGA-55-7570-01 4 54347901 54347901 T G LNX1 Missense_Mutation p.S491R 0.31 tolerated(0.36) benign(0.005) TCGA-55-7570-01 4 55161376 55161376 C T PDGFRA Silent p.D1069D 0.21 TCGA-55-7570-01 4 55561880 55561880 C T KIT Silent p.T90T 0.29 TCGA-55-7570-01 4 57180246 57180246 G A KIAA1211 Missense_Mutation p.C193Y 0.32 tolerated(1) possibly_damaging(0.836) TCGA-55-7570-01 4 69696438 69696438 A T UGT2B10 Silent p.R476R 0.18 TCGA-55-7570-01 4 79860372 79860372 G C PAQR3 Missense_Mutation p.Q3E 0.24 deleterious_low_confidence(0.02) benign(0.016) TCGA-55-7570-01 4 8417700 8417700 A - ACOX3 Frame_Shift_Del p.N57Kfs*21 0.25 TCGA-55-7570-01 4 8613770 8613770 C G CPZ Missense_Mutation p.S415C 0.28 deleterious(0.01) possibly_damaging(0.797) TCGA-55-7570-01 4 94344119 94344119 G T GRID2 Missense_Mutation p.K515N 0.29 deleterious(0.02) probably_damaging(0.979) TCGA-55-7570-01 5 110430633 110430633 C G WDR36 Missense_Mutation p.L116V 0.36 deleterious(0.03) benign(0.025) TCGA-55-7570-01 5 113698773 113698773 C G KCNN2 Missense_Mutation p.H101D 0.38 tolerated(0.61) benign(0.046) TCGA-55-7570-01 5 120021742 120021742 A G PRR16 Missense_Mutation p.S62G 0.42 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-55-7570-01 5 140182622 140182622 G A PCDHA3 Missense_Mutation p.G614R 0.38 tolerated_low_confidence(0.12) benign(0.014) TCGA-55-7570-01 5 140203340 140203340 C T PCDHA5 Silent p.A660A 0.40 TCGA-55-7570-01 5 140222390 140222390 T A PCDHA8 Missense_Mutation p.V495E 0.32 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-55-7570-01 5 140769311 140769311 C A PCDHGB4 Silent p.R620R 0.48 TCGA-55-7570-01 5 148989191 148989191 C T ARHGEF37 Silent p.L131L 0.37 TCGA-55-7570-01 5 159996664 159996664 G A ATP10B Silent p.L1259L 0.29 TCGA-55-7570-01 5 168222582 168222582 G C SLIT3 Missense_Mutation p.R313G 0.37 deleterious(0) probably_damaging(1) TCGA-55-7570-01 5 171384669 171384669 C A FBXW11 Missense_Mutation p.A27S 0.28 tolerated_low_confidence(0.9) benign(0.003) TCGA-55-7570-01 5 176305048 176305048 C G UNC5A Missense_Mutation p.L597V 0.38 tolerated(0.89) probably_damaging(0.996) TCGA-55-7570-01 5 36680629 36680629 T A SLC1A3 Silent p.A409A 0.07 TCGA-55-7570-01 5 37392113 37392113 A G WDR70 Missense_Mutation p.K63E 0.14 tolerated(0.06) benign(0.02) TCGA-55-7570-01 5 38406338 38406338 G C EGFLAM Missense_Mutation p.E275Q 0.16 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-55-7570-01 5 42801082 42801082 C A SEPP1 Missense_Mutation p.A296S 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.703) TCGA-55-7570-01 5 43175188 43175188 G C ZNF131 Missense_Mutation p.E575Q 0.25 tolerated_low_confidence(0.1) benign(0.079) TCGA-55-7570-01 5 6618078 6618078 C A NSUN2 Missense_Mutation p.S292I 0.10 deleterious(0.01) probably_damaging(0.985) TCGA-55-7570-01 5 98210789 98210789 C A CHD1 Missense_Mutation p.G1143C 0.32 tolerated(0.09) benign(0.014) TCGA-55-7570-01 6 111498613 111498613 C T SLC16A10 Silent p.G229G 0.31 TCGA-55-7570-01 6 112021338 112021338 C G FYN Silent p.L277L 0.27 TCGA-55-7570-01 6 114379055 114379055 A G HS3ST5 Missense_Mutation p.I136T 0.29 deleterious(0) benign(0.004) TCGA-55-7570-01 6 123318993 123318993 C A CLVS2 Missense_Mutation p.P24Q 0.18 tolerated(0.09) benign(0.417) TCGA-55-7570-01 6 1391291 1391291 G C FOXF2 Missense_Mutation p.S370T 0.23 tolerated(0.05) benign(0.094) TCGA-55-7570-01 6 152501415 152501415 C G SYNE1 Silent p.R7772R 0.27 TCGA-55-7570-01 6 152698034 152698034 G A SYNE1 Missense_Mutation p.A3008V 0.15 possibly_damaging(0.744) TCGA-55-7570-01 6 26156605 26156605 C T HIST1H1E 5'UTR 0.24 TCGA-55-7570-01 6 26189058 26189058 T C HIST1H4D Missense_Mutation p.T83A 0.22 deleterious(0) benign(0.194) TCGA-55-7570-01 6 26250767 26250767 T G HIST1H3F Missense_Mutation p.T23P 0.36 deleterious_low_confidence(0.01) benign(0.013) TCGA-55-7570-01 6 26385287 26385287 G T BTN2A2 Missense_Mutation p.V47L 0.29 tolerated(0.08) benign(0.246) TCGA-55-7570-01 6 29365235 29365235 T A OR12D2 Silent p.P253P 0.26 TCGA-55-7570-01 6 29627382 29627382 C T MOG Silent p.F125F 0.17 TCGA-55-7570-01 6 30230082 30230082 T C HCG17 Intron 0.28 TCGA-55-7570-01 6 31922413 31922413 C A NELFE Missense_Mutation p.D221Y 0.14 deleterious(0.02) unknown(0) TCGA-55-7570-01 6 32548584 32548584 G T HLA-DRB1 Silent p.G234G 0.09 TCGA-55-7570-01 6 32726839 32726839 G T HLA-DQB2 Nonsense_Mutation p.S145* 0.14 TCGA-55-7570-01 6 33162447 33162447 C A RXRB 3'UTR 0.28 TCGA-55-7570-01 6 33179629 33179629 C T RING1 Silent p.A323A 0.27 TCGA-55-7570-01 6 34789488 34789488 C A UHRF1BP1 Missense_Mutation p.Q35K 0.28 deleterious(0) probably_damaging(0.988) TCGA-55-7570-01 6 35466228 35466229 - T TULP1 Frame_Shift_Ins p.I502Nfs*147 0.27 TCGA-55-7570-01 6 46802344 46802344 C A MEP1A Missense_Mutation p.P547T 0.22 deleterious(0) probably_damaging(1) TCGA-55-7570-01 6 6266855 6266855 G C F13A1 Silent p.G169G 0.32 TCGA-55-7570-01 6 87725386 87725386 C T HTR1E Missense_Mutation p.H112Y 0.25 deleterious(0) probably_damaging(1) TCGA-55-7570-01 6 87726193 87726193 G C HTR1E 3'UTR 0.32 TCGA-55-7570-01 6 88187120 88187120 G A SLC35A1 Silent p.V19V 0.18 TCGA-55-7570-01 7 101925179 101925179 C T SH2B2 5'Flank 0.15 TCGA-55-7570-01 7 107303798 107303798 G A SLC26A4 Nonsense_Mutation p.W74* 0.28 TCGA-55-7570-01 7 113518936 113518936 T A PPP1R3A Silent p.S737S 0.28 TCGA-55-7570-01 7 126746640 126746640 G T GRM8 Missense_Mutation p.L213M 0.30 tolerated(0.39) benign(0.047) TCGA-55-7570-01 7 127017249 127017249 T C ZNF800 Missense_Mutation p.M98V 0.18 tolerated(0.48) benign(0.024) TCGA-55-7570-01 7 130044478 130044478 C T CEP41 Missense_Mutation p.E117K 0.22 tolerated(0.53) benign(0.044) TCGA-55-7570-01 7 130417815 130417815 G C KLF14 3'UTR 0.33 TCGA-55-7570-01 7 132192796 132192796 A T PLXNA4 Missense_Mutation p.H219Q 0.33 tolerated(1) possibly_damaging(0.557) TCGA-55-7570-01 7 140301609 140301609 C - DENND2A Frame_Shift_Del p.A197Qfs*120 0.19 TCGA-55-7570-01 7 141797445 141797445 A T MGAM Missense_Mutation p.Y1686F 0.22 tolerated(0.07) benign(0.039) TCGA-55-7570-01 7 143701229 143701229 T A OR6B1 Missense_Mutation p.L47Q 0.22 deleterious(0.03) benign(0.165) TCGA-55-7570-01 7 143826647 143826647 T C OR2A14 Missense_Mutation p.W148R 0.22 deleterious(0) possibly_damaging(0.837) TCGA-55-7570-01 7 158483362 158483362 C T NCAPG2 Silent p.Q145Q 0.18 TCGA-55-7570-01 7 18633640 18633640 C T HDAC9 Missense_Mutation p.L218F 0.32 deleterious(0) probably_damaging(0.999) TCGA-55-7570-01 7 20445751 20445751 A G ITGB8 Silent p.S660S 0.32 TCGA-55-7570-01 7 36910005 36910005 T A ELMO1 Missense_Mutation p.Q633L 0.22 deleterious(0.03) benign(0.074) TCGA-55-7570-01 7 38393526 38393526 G T TRGV4 Silent p.T48T 0.24 TCGA-55-7570-01 7 43351470 43351470 G T HECW1 Missense_Mutation p.D46Y 0.20 deleterious_low_confidence(0) possibly_damaging(0.758) TCGA-55-7570-01 7 51085181 51085181 G C COBL 3'UTR 0.17 TCGA-55-7570-01 7 55223531 55223531 G A EGFR Missense_Mutation p.V300M 0.21 deleterious(0) probably_damaging(0.995) TCGA-55-7570-01 7 63726554 63726554 G T ZNF679 Missense_Mutation p.K181N 0.29 tolerated(0.12) benign(0.005) TCGA-55-7570-01 7 64863949 64863949 A G ZNF92 Missense_Mutation p.M308V 0.27 deleterious(0.01) benign(0.063) TCGA-55-7570-01 7 82584810 82584810 C A PCLO Missense_Mutation p.R1820M 0.26 unknown(0) TCGA-55-7570-01 7 82784333 82784333 G C PCLO Missense_Mutation p.Q542E 0.29 benign(0.092) TCGA-55-7570-01 8 113562942 113562942 C A CSMD3 Missense_Mutation p.D1508Y 0.15 deleterious(0) probably_damaging(0.997) TCGA-55-7570-01 8 116599318 116599318 T G TRPS1 Silent p.P870P 0.10 TCGA-55-7570-01 8 141310572 141310572 T A TRAPPC9 Missense_Mutation p.K686N 0.33 deleterious(0) benign(0.011) TCGA-55-7570-01 8 141542188 141542188 C A AGO2 Silent p.A845A 0.43 TCGA-55-7570-01 8 142161011 142161011 C T DENND3 Missense_Mutation p.H192Y 0.23 deleterious(0) probably_damaging(0.909) TCGA-55-7570-01 8 144663466 144663466 G A EEF1D Silent p.S440S 0.35 TCGA-55-7570-01 8 145006189 145006189 C A PLEC Silent p.A835A 0.43 TCGA-55-7570-01 8 145625613 145625613 G A CPSF1 Missense_Mutation p.P295L 0.12 deleterious(0) probably_damaging(0.969) TCGA-55-7570-01 8 145756141 145756141 T G ARHGAP39 Missense_Mutation p.H1032P 0.42 deleterious(0.04) benign(0.01) TCGA-55-7570-01 8 28384969 28384969 T G FZD3 Missense_Mutation p.F231C 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-7570-01 8 2855595 2855595 C T CSMD1 Missense_Mutation p.G2772D 0.34 probably_damaging(1) TCGA-55-7570-01 8 30702722 30702722 A T TEX15 Nonsense_Mutation p.L1271* 0.42 TCGA-55-7570-01 8 36766980 36766980 T C KCNU1 Missense_Mutation p.F753S 0.04 deleterious(0) probably_damaging(0.992) TCGA-55-7570-01 8 37756816 37756816 G - RAB11FIP1 Frame_Shift_Del p.K49Rfs*80 0.17 TCGA-55-7570-01 8 39502856 39502856 G T ADAM18 Splice_Site p.X304_splice 0.57 TCGA-55-7570-01 8 68138360 68138360 C T ARFGEF1 Silent p.K1325K 0.41 TCGA-55-7570-01 8 72958765 72958765 G T TRPA1 Missense_Mutation p.P682T 0.23 tolerated(0.05) probably_damaging(0.999) TCGA-55-7570-01 8 77763259 77763259 G T ZFHX4 Missense_Mutation p.V1368L 0.24 benign(0) TCGA-55-7570-01 8 77775895 77775895 G C ZFHX4 Silent p.L3315L 0.30 TCGA-55-7570-01 9 100893318 100893318 C G CORO2A Missense_Mutation p.M263I 0.64 tolerated(0.74) benign(0) TCGA-55-7570-01 9 104432378 104432378 C T GRIN3A Silent p.K772K 0.32 TCGA-55-7570-01 9 107361360 107361360 C A OR13C5 Missense_Mutation p.C112F 0.16 deleterious(0) probably_damaging(0.997) TCGA-55-7570-01 9 107367574 107367574 C A OR13C2 Missense_Mutation p.C112F 0.16 deleterious(0) probably_damaging(0.997) TCGA-55-7570-01 9 113208255 113208255 T C SVEP1 Missense_Mutation p.D1442G 0.41 probably_damaging(0.983) TCGA-55-7570-01 9 120476587 120476587 C A TLR4 Missense_Mutation p.F727L 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-55-7570-01 9 135864485 135864485 G A GFI1B Missense_Mutation p.R183Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-55-7570-01 9 137710716 137710716 C T COL5A1 Missense_Mutation p.S1454F 0.35 unknown(0) TCGA-55-7570-01 9 18639360 18639360 A C ADAMTSL1 Missense_Mutation p.K262T 0.46 deleterious(0.01) probably_damaging(0.964) TCGA-55-7570-01 9 67968389 67968389 A C ANKRD20A1 Missense_Mutation p.I650L 0.18 tolerated(0.25) benign(0.031) TCGA-55-7570-01 9 91686121 91686121 C A SHC3 Missense_Mutation p.G259V 0.33 deleterious(0.02) probably_damaging(0.975) TCGA-55-7570-01 9 97535320 97535320 C G C9orf3 Missense_Mutation p.N278K 0.31 deleterious(0) probably_damaging(1) TCGA-55-7570-01 X 101615444 101615444 C A NXF2B 3'UTR 0.27 TCGA-55-7570-01 X 103431141 103431141 G A FAM199X Missense_Mutation p.V190M 0.57 tolerated(0.13) probably_damaging(0.996) TCGA-55-7570-01 X 107320544 107320544 C T VSIG1 Missense_Mutation p.P402L 0.56 tolerated_low_confidence(0.31) unknown(0) TCGA-55-7570-01 X 110005943 110005943 C A CHRDL1 Missense_Mutation p.V63L 0.51 tolerated(0.88) probably_damaging(0.999) TCGA-55-7570-01 X 111155945 111155945 G C TRPC5 Missense_Mutation p.I158M 0.54 deleterious(0.02) possibly_damaging(0.649) TCGA-55-7570-01 X 111903860 111903860 T A LHFPL1 Missense_Mutation p.Q159L 0.58 tolerated(0.3) benign(0.103) TCGA-55-7570-01 X 13775793 13775793 G T OFD1 Missense_Mutation p.A476S 0.57 tolerated(1) benign(0.01) TCGA-55-7570-01 X 141291040 141291040 G A MAGEC2 Missense_Mutation p.S245F 0.59 deleterious(0) probably_damaging(0.914) TCGA-55-7570-01 X 142716907 142716907 T C SLITRK4 Missense_Mutation p.H673R 0.46 tolerated(0.53) benign(0.024) TCGA-55-7570-01 X 153073880 153073880 G A PDZD4 Silent p.T77T 0.73 TCGA-55-7570-01 X 18917333 18917334 - A PHKA2 Frame_Shift_Ins p.Q1025Pfs*38 0.53 TCGA-55-7570-01 X 30268915 30268915 G T MAGEB1 Missense_Mutation p.S102I 0.67 tolerated(0.41) benign(0.094) TCGA-55-7570-01 X 31947798 31947798 G A DMD Missense_Mutation p.P2276L 0.17 benign(0) TCGA-55-7570-01 X 32662424 32662424 T C DMD Missense_Mutation p.M386V 0.75 benign(0.187) TCGA-55-7570-01 X 34960964 34960964 C A FAM47B Missense_Mutation p.P6T 0.71 tolerated(0.32) possibly_damaging(0.777) TCGA-55-7570-01 X 37027568 37027568 G A FAM47C Missense_Mutation p.R362H 0.55 tolerated(0.12) probably_damaging(0.949) TCGA-55-7570-01 X 47273017 47273017 A T ZNF157 3'UTR 0.64 TCGA-55-7570-01 X 48755788 48755788 C G PQBP1 5'UTR 0.44 TCGA-55-7570-01 X 48762436 48762436 G C SLC35A2 Silent p.L250L 0.33 TCGA-55-7570-01 X 49067064 49067064 G T CACNA1F Silent p.R1502R 0.35 TCGA-55-7570-01 X 53245268 53245268 G C KDM5C Missense_Mutation p.L257V 0.51 tolerated(0.19) benign(0.003) TCGA-55-7570-01 X 54011568 54011568 G C PHF8 Missense_Mutation p.S777C 0.73 tolerated(0.05) benign(0.024) TCGA-55-7570-01 X 55650097 55650097 G C FOXR2 5'UTR 0.58 TCGA-55-7570-01 X 73066325 73066325 G A XIST RNA 0.59 TCGA-55-7570-01 X 73960758 73960758 G C KIAA2022 Missense_Mutation p.P1212A 0.55 deleterious(0.01) benign(0.132) TCGA-55-7570-01 X 73960982 73960982 T A KIAA2022 Missense_Mutation p.Q1137L 0.51 deleterious(0) probably_damaging(0.988) TCGA-55-7570-01 X 91874004 91874004 C A PCDH11X 3'UTR 0.67 TCGA-55-7570-01 X 99931094 99931094 G T SYTL4 Nonsense_Mutation p.Y649* 0.66 TCGA-55-7570-01 Y 15021274 15021274 G A DDX3Y Missense_Mutation p.G36E 0.38 tolerated(0.18) benign(0.009) TCGA-55-7573-01 10 27688056 27688056 T A PTCHD3 Missense_Mutation p.T491S 0.29 deleterious(0) probably_damaging(0.977) TCGA-55-7573-01 10 50667157 50667157 T C ERCC6 Missense_Mutation p.R1396G 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-7573-01 10 87373269 87373269 G A GRID1 Silent p.A832A 0.06 TCGA-55-7573-01 11 10822541 10822541 G C EIF4G2 Missense_Mutation p.P503A 0.07 tolerated(0.38) probably_damaging(0.994) TCGA-55-7573-01 11 55418704 55418704 G T OR4S2 Nonsense_Mutation p.E109* 0.16 TCGA-55-7573-01 11 55579820 55579820 G T OR5L1 Missense_Mutation p.R293I 0.09 deleterious(0) probably_damaging(0.916) TCGA-55-7573-01 11 63764060 63764060 A G OTUB1 Missense_Mutation p.Y93C 0.48 deleterious(0) possibly_damaging(0.624) TCGA-55-7573-01 11 64596984 64596984 C A CDC42BPG Missense_Mutation p.R1309L 0.35 deleterious(0) probably_damaging(0.999) TCGA-55-7573-01 11 92881884 92881884 T C SLC36A4 Missense_Mutation p.Y445C 0.34 deleterious(0.01) benign(0.033) TCGA-55-7573-01 12 117612494 117612494 C T FBXO21 Missense_Mutation p.G234D 0.07 tolerated(0.64) benign(0.229) TCGA-55-7573-01 12 122691766 122691766 C T B3GNT4 Missense_Mutation p.A323V 0.06 tolerated(0.13) probably_damaging(0.942) TCGA-55-7573-01 12 49724607 49724607 C T TROAP Missense_Mutation p.P660L 0.14 deleterious(0) possibly_damaging(0.714) TCGA-55-7573-01 15 25420090 25420090 C A SNORD115-3 RNA 0.08 TCGA-55-7573-01 15 74244215 74244215 C A LOXL1 3'UTR 0.24 TCGA-55-7573-01 16 20335360 20335360 C T GP2 Missense_Mutation p.E105K 0.37 deleterious(0.01) probably_damaging(0.91) TCGA-55-7573-01 17 16024509 16024509 C A NCOR1 Missense_Mutation p.R570L 0.28 probably_damaging(0.996) TCGA-55-7573-01 17 17106252 17106252 C A PLD6 Silent p.R196R 0.32 TCGA-55-7573-01 17 73206052 73206052 G T NUP85 Nonsense_Mutation p.E88* 0.24 TCGA-55-7573-01 17 7578526 7578526 C A TP53 Missense_Mutation p.C135F 0.26 deleterious(0) probably_damaging(1) TCGA-55-7573-01 17 80146200 80146200 C T CCDC57 Missense_Mutation p.R316K 0.25 tolerated(0.4) benign(0.009) TCGA-55-7573-01 19 50099261 50099261 G T PRR12 Missense_Mutation p.G557C 0.20 probably_damaging(0.992) TCGA-55-7573-01 19 57666695 57666695 T - DUXA Frame_Shift_Del p.R162Gfs*7 0.10 TCGA-55-7573-01 19 57746869 57746869 T G AURKC 3'UTR 0.13 TCGA-55-7573-01 1 148009403 148009403 T C NBPF14 Missense_Mutation p.Y641C 0.06 tolerated(0.2) possibly_damaging(0.878) TCGA-55-7573-01 1 151345148 151345148 G A SELENBP1 5'UTR 0.10 TCGA-55-7573-01 1 159888488 159888488 G C TAGLN2 3'UTR 0.10 TCGA-55-7573-01 1 167042703 167042703 G A GPA33 Silent p.V39V 0.26 TCGA-55-7573-01 1 170705309 170705309 G A PRRX1 Silent p.Q240Q 0.32 TCGA-55-7573-01 1 186056718 186056718 G T HMCN1 Nonsense_Mutation p.E3102* 0.16 TCGA-55-7573-01 1 201983060 201983060 C - ELF3 Frame_Shift_Del p.F303Lfs*22 0.25 TCGA-55-7573-01 1 248308722 248308722 C G OR2M5 Silent p.S91S 0.31 TCGA-55-7573-01 1 26357639 26357639 T G EXTL1 Missense_Mutation p.I373S 0.18 deleterious(0) possibly_damaging(0.649) TCGA-55-7573-01 1 28177017 28177017 A T PPP1R8 3'UTR 0.16 TCGA-55-7573-01 20 36641109 36641109 G A TTI1 Silent p.L370L 0.11 TCGA-55-7573-01 2 207170309 207170309 T C ZDBF2 Missense_Mutation p.F353L 0.22 tolerated(0.63) benign(0.153) TCGA-55-7573-01 2 27682251 27682251 C T IFT172 Silent p.E927E 0.11 TCGA-55-7573-01 2 48807792 48807792 G T STON1-GTF2A1L Missense_Mutation p.G7V 0.05 deleterious(0.02) possibly_damaging(0.907) TCGA-55-7573-01 2 8919861 8919861 G A KIDINS220 Silent p.V771V 0.24 TCGA-55-7573-01 3 124951371 124951371 G C ZNF148 Missense_Mutation p.F733L 0.25 deleterious(0.01) benign(0.294) TCGA-55-7573-01 3 156763603 156763603 C T LEKR1 3'UTR 0.13 TCGA-55-7573-01 3 195593860 195593860 G A TNK2 Missense_Mutation p.R1052W 0.09 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-55-7573-01 4 123192663 123192663 G A KIAA1109 Missense_Mutation p.E2662K 0.14 possibly_damaging(0.625) TCGA-55-7573-01 4 53786890 53786890 G A SCFD2 Splice_Site p.X569_splice 0.11 TCGA-55-7573-01 4 65274985 65274985 C A TECRL Missense_Mutation p.D29Y 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.798) TCGA-55-7573-01 4 7056195 7056196 - C TADA2B Frame_Shift_Ins p.N227Qfs*46 0.20 TCGA-55-7573-01 5 168195163 168195163 C A SLIT3 Intron 0.45 TCGA-55-7573-01 5 176019778 176019778 C G CDHR2 Missense_Mutation p.I1263M 0.31 tolerated(0.16) benign(0.009) TCGA-55-7573-01 5 52235460 52235460 G A ITGA1 Missense_Mutation p.S1040N 0.19 tolerated(0.29) benign(0.001) TCGA-55-7573-01 5 639251 639251 G T CEP72 Silent p.L418L 0.25 TCGA-55-7573-01 6 130425623 130425623 C A L3MBTL3 Missense_Mutation p.P597T 0.42 tolerated(0.23) possibly_damaging(0.743) TCGA-55-7573-01 6 38843499 38843499 G A DNAH8 Missense_Mutation p.E2368K 0.08 benign(0.001) TCGA-55-7573-01 7 148497609 148497609 C G CUL1 Missense_Mutation p.L756V 0.20 deleterious(0) probably_damaging(1) TCGA-55-7573-01 7 157174955 157174955 A T DNAJB6 Missense_Mutation p.D121V 0.22 deleterious(0) unknown(0) TCGA-55-7573-01 7 2279318 2279318 G A FTSJ2 Silent p.S11S 0.15 TCGA-55-7573-01 7 2309240 2309240 C A SNX8 Missense_Mutation p.C192F 0.20 tolerated(0.64) benign(0.091) TCGA-55-7573-01 7 47882684 47882684 A G PKD1L1 Missense_Mutation p.V1774A 0.21 tolerated(0.13) benign(0.011) TCGA-55-7573-01 7 55242466 55242474 GAATTAAGA - EGFR In_Frame_Del p.L747_E749del 0.19 TCGA-55-7573-01 7 55242490 55242490 A G EGFR Missense_Mutation p.K754E 0.20 deleterious(0.02) probably_damaging(0.998) TCGA-55-7573-01 7 81346632 81346632 G - HGF Frame_Shift_Del p.R441Efs*37 0.12 TCGA-55-7573-01 8 38250462 38250462 G T LETM2 Missense_Mutation p.M103I 0.40 tolerated(0.07) benign(0.02) TCGA-55-7573-01 8 77617547 77617547 G C ZFHX4 Silent p.L408L 0.26 TCGA-55-7573-01 9 133936562 133936562 C T LAMC3 Missense_Mutation p.P767S 0.38 deleterious(0.03) possibly_damaging(0.795) TCGA-55-7573-01 9 135553884 135553884 C T GTF3C4 Missense_Mutation p.P293L 0.11 deleterious(0) probably_damaging(0.998) TCGA-55-7573-01 9 139301868 139301868 C A SDCCAG3 Missense_Mutation p.G183V 0.19 deleterious(0.01) benign(0.252) TCGA-55-7573-01 X 148055037 148055037 G T AFF2 Missense_Mutation p.A1102S 0.28 deleterious(0.01) probably_damaging(0.977) TCGA-55-7573-01 X 63444984 63444984 C A ASB12 Missense_Mutation p.G183C 0.24 tolerated(0.23) probably_damaging(1) TCGA-55-7573-01 X 69719800 69719800 G A DLG3 Missense_Mutation p.M682I 0.16 deleterious(0) benign(0.109) TCGA-55-7573-01 X 80047410 80047410 G A BRWD3 Silent p.L125L 0.25 TCGA-55-7574-01 10 115609007 115609007 C G DCLRE1A Missense_Mutation p.E619D 0.10 deleterious(0.04) benign(0.03) TCGA-55-7574-01 10 119013857 119013857 G C SLC18A2 Intron 0.26 TCGA-55-7574-01 10 37422873 37422873 G A ANKRD30A Missense_Mutation p.G160E 0.08 deleterious(0.03) benign(0.298) TCGA-55-7574-01 10 38121209 38121209 C G ZNF248 Silent p.G358G 0.23 TCGA-55-7574-01 10 50916560 50916560 G A C10orf53 Missense_Mutation p.G124E 0.09 deleterious_low_confidence(0) unknown(0) TCGA-55-7574-01 10 60566792 60566792 G A BICC1 Silent p.E750E 0.12 TCGA-55-7574-01 10 69926137 69926137 C A MYPN Missense_Mutation p.P563T 0.20 tolerated(0.15) benign(0.034) TCGA-55-7574-01 10 71707089 71707089 G A COL13A1 Silent p.K672K 0.11 TCGA-55-7574-01 10 71851671 71851671 G A H2AFY2 Silent p.G146G 0.08 TCGA-55-7574-01 10 72633268 72633268 C T SGPL1 Missense_Mutation p.A407V 0.05 deleterious(0.04) benign(0.039) TCGA-55-7574-01 10 75525632 75525632 C T SEC24C Silent p.L481L 0.16 TCGA-55-7574-01 10 78637593 78637593 G C KCNMA1 Missense_Mutation p.I1136M 0.27 tolerated_low_confidence(0.08) benign(0.01) TCGA-55-7574-01 10 85909813 85909813 G T GHITM Missense_Mutation p.V199L 0.24 tolerated(0.19) benign(0.013) TCGA-55-7574-01 10 95111578 95111578 G C MYOF Silent p.L1169L 0.11 TCGA-55-7574-01 11 118925964 118925964 C A HYOU1 Missense_Mutation p.A118S 0.13 tolerated(0.43) benign(0.001) TCGA-55-7574-01 11 119027683 119027683 G A ABCG4 Missense_Mutation p.E343K 0.08 tolerated(0.52) benign(0.004) TCGA-55-7574-01 11 121032845 121032845 G T TECTA Missense_Mutation p.V1680L 0.09 tolerated(0.49) benign(0.002) TCGA-55-7574-01 11 122738175 122738175 G T CRTAM Silent p.T292T 0.12 TCGA-55-7574-01 11 133791250 133791250 G A IGSF9B Silent p.L790L 0.11 TCGA-55-7574-01 11 13435091 13435091 T G BTBD10 Missense_Mutation p.K265T 0.06 deleterious(0.01) possibly_damaging(0.704) TCGA-55-7574-01 11 14865513 14865513 C A PDE3B Missense_Mutation p.H821N 0.27 deleterious(0) probably_damaging(1) TCGA-55-7574-01 11 30033664 30033664 C A KCNA4 Nonsense_Mutation p.E188* 0.28 TCGA-55-7574-01 11 30033840 30033840 T G KCNA4 Missense_Mutation p.E129A 0.11 tolerated_low_confidence(0.18) benign(0.015) TCGA-55-7574-01 11 33589763 33589763 A T KIAA1549L Missense_Mutation p.Y1110F 0.09 tolerated(0.1) probably_damaging(0.999) TCGA-55-7574-01 11 3733881 3733881 C G NUP98 Missense_Mutation p.K885N 0.08 deleterious(0) possibly_damaging(0.72) TCGA-55-7574-01 11 40137205 40137205 G T LRRC4C Missense_Mutation p.P213H 0.13 deleterious(0) probably_damaging(1) TCGA-55-7574-01 11 40137206 40137206 G T LRRC4C Missense_Mutation p.P213T 0.15 deleterious(0) probably_damaging(1) TCGA-55-7574-01 11 51411644 51411644 C A OR4A5 Missense_Mutation p.C251F 0.17 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-55-7574-01 11 55944298 55944298 G T OR5J2 Missense_Mutation p.V69L 0.06 tolerated(0.34) benign(0.02) TCGA-55-7574-01 11 56237626 56237626 C A OR5M3 Missense_Mutation p.M116I 0.06 deleterious(0.02) possibly_damaging(0.839) TCGA-55-7574-01 11 58275352 58275352 G A OR5B21 Missense_Mutation p.A76V 0.11 deleterious_low_confidence(0.01) benign(0.019) TCGA-55-7574-01 11 5878756 5878756 C A OR52E8 Missense_Mutation p.Q59H 0.15 tolerated(0.88) benign(0.001) TCGA-55-7574-01 11 64807160 64807160 G A SNX15 Missense_Mutation p.D309N 0.26 deleterious(0) probably_damaging(0.981) TCGA-55-7574-01 11 64883032 64883032 G C TM7SF2 Missense_Mutation p.G353A 0.05 deleterious(0) probably_damaging(1) TCGA-55-7574-01 11 65983614 65983614 G T PACS1 Missense_Mutation p.A229S 0.19 deleterious(0.04) possibly_damaging(0.714) TCGA-55-7574-01 11 66282012 66282012 C T BBS1 Missense_Mutation p.P99S 0.06 deleterious(0.01) benign(0.086) TCGA-55-7574-01 11 72145270 72145270 G C CLPB Silent p.L83L 0.11 TCGA-55-7574-01 11 74547638 74547638 C T RNF169 Nonsense_Mutation p.Q664* 0.07 TCGA-55-7574-01 11 92086102 92086102 C A FAT3 Nonsense_Mutation p.S275* 0.10 TCGA-55-7574-01 11 93488502 93488502 C T C11orf54 Nonsense_Mutation p.Q153* 0.09 TCGA-55-7574-01 12 1006841 1006841 C T WNK1 Missense_Mutation p.L2148F 0.11 deleterious(0.05) probably_damaging(0.929) TCGA-55-7574-01 12 109017937 109017937 T C SELPLG Silent p.L65L 0.05 TCGA-55-7574-01 12 114793577 114793577 C G TBX5 Silent p.L439L 0.12 TCGA-55-7574-01 12 118467620 118467620 G A RFC5 Missense_Mutation p.A306T 0.09 deleterious(0) probably_damaging(0.961) TCGA-55-7574-01 12 124235710 124235710 C T ATP6V0A2 Silent p.L663L 0.12 TCGA-55-7574-01 12 48132935 48132935 G A RAPGEF3 Missense_Mutation p.L818F 0.19 deleterious(0) probably_damaging(0.948) TCGA-55-7574-01 12 48372469 48372469 C T COL2A1 Missense_Mutation p.G936S 0.15 unknown(0) TCGA-55-7574-01 12 52635264 52635264 A T KRT7 Silent p.T234T 0.07 TCGA-55-7574-01 12 56232375 56232375 G A MMP19 Intron 0.11 TCGA-55-7574-01 12 57590912 57590912 C T LRP1 Missense_Mutation p.R3014C 0.09 possibly_damaging(0.614) TCGA-55-7574-01 12 64437229 64437229 A G SRGAP1 Silent p.R225R 0.15 TCGA-55-7574-01 12 80750261 80750261 G T OTOGL Missense_Mutation p.G1949C 0.06 tolerated(0.05) probably_damaging(0.992) TCGA-55-7574-01 13 111290831 111290831 A T CARKD Missense_Mutation p.D379V 0.19 deleterious_low_confidence(0) unknown(0) TCGA-55-7574-01 13 20409647 20409647 G A ZMYM5 3'Flank 0.06 TCGA-55-7574-01 13 24895869 24895869 C A C1QTNF9 Missense_Mutation p.T322K 0.08 deleterious(0) probably_damaging(1) TCGA-55-7574-01 13 52707317 52707317 C T NEK3 Silent p.L477L 0.20 TCGA-55-7574-01 13 67801390 67801390 C A PCDH9 Missense_Mutation p.V395L 0.05 tolerated(0.65) benign(0.004) TCGA-55-7574-01 14 20815046 20815046 G C PARP2 Missense_Mutation p.D113H 0.10 deleterious(0) probably_damaging(0.93) TCGA-55-7574-01 14 53325133 53325133 C T FERMT2 Missense_Mutation p.E676K 0.13 deleterious(0) probably_damaging(0.98) TCGA-55-7574-01 14 61997242 61997242 G A RP11-47I22.4 Missense_Mutation p.E69K 0.12 deleterious(0.01) probably_damaging(0.989) TCGA-55-7574-01 14 63174541 63174541 C A KCNH5 Silent p.P884P 0.13 TCGA-55-7574-01 14 68944403 68944403 G T RAD51B Intron 0.15 TCGA-55-7574-01 14 76948464 76948464 A T ESRRB Missense_Mutation p.K207M 0.11 deleterious(0.02) possibly_damaging(0.832) TCGA-55-7574-01 14 77572027 77572027 G A CIPC 5'UTR 0.11 TCGA-55-7574-01 14 78353523 78353523 G T ADCK1 Silent p.R171R 0.07 TCGA-55-7574-01 15 34151830 34151830 G C RYR3 Missense_Mutation p.E4733Q 0.09 possibly_damaging(0.474) TCGA-55-7574-01 15 42041375 42041375 C T MGA Missense_Mutation p.S1857L 0.06 tolerated(0.13) probably_damaging(0.997) TCGA-55-7574-01 15 42041491 42041491 C T MGA Nonsense_Mutation p.Q1896* 0.08 TCGA-55-7574-01 15 62360140 62360140 G C C2CD4A Missense_Mutation p.E110Q 0.18 deleterious(0) probably_damaging(1) TCGA-55-7574-01 15 66621441 66621441 G A DIS3L Missense_Mutation p.E779K 0.07 tolerated(0.3) benign(0.033) TCGA-55-7574-01 15 74219600 74219600 C G LOXL1 Missense_Mutation p.S159W 0.08 deleterious(0) probably_damaging(0.993) TCGA-55-7574-01 15 83456108 83456108 T G FSD2 Missense_Mutation p.D12A 0.08 tolerated_low_confidence(0.54) benign(0.006) TCGA-55-7574-01 15 85345225 85345225 G A ZNF592 Silent p.S1135S 0.10 TCGA-55-7574-01 16 16302622 16302622 C G ABCC6 Missense_Mutation p.E253Q 0.09 tolerated(0.45) benign(0.022) TCGA-55-7574-01 16 4164189 4164189 G A ADCY9 Silent p.L419L 0.12 TCGA-55-7574-01 16 5038216 5038216 C G SEC14L5 Missense_Mutation p.L94V 0.11 tolerated(0.32) benign(0.403) TCGA-55-7574-01 16 67325290 67325290 G T KCTD19 Missense_Mutation p.D829E 0.08 deleterious(0) probably_damaging(0.938) TCGA-55-7574-01 16 7383027 7383027 C T RBFOX1 Silent p.L9L 0.06 TCGA-55-7574-01 16 81399073 81399073 G A GAN Missense_Mutation p.E498K 0.09 tolerated(0.06) benign(0.086) TCGA-55-7574-01 16 83999139 83999139 G C OSGIN1 Missense_Mutation p.D321H 0.08 deleterious(0) probably_damaging(0.986) TCGA-55-7574-01 17 10419566 10419566 G A MYH1 Missense_Mutation p.P100S 0.13 deleterious(0.01) possibly_damaging(0.803) TCGA-55-7574-01 17 29205039 29205039 G A ATAD5 Missense_Mutation p.E1313K 0.07 deleterious(0) probably_damaging(0.994) TCGA-55-7574-01 17 34091593 34091593 G A C17orf50 Missense_Mutation p.D161N 0.35 deleterious(0.03) possibly_damaging(0.908) TCGA-55-7574-01 17 34236567 34236567 G A AC015849.16 RNA 0.15 TCGA-55-7574-01 17 34304721 34304721 C T CCL16 Missense_Mutation p.D82N 0.06 tolerated(0.37) benign(0.007) TCGA-55-7574-01 17 38643291 38643291 C A TNS4 Nonsense_Mutation p.E429* 0.06 TCGA-55-7574-01 17 42818707 42818707 G C DBF4B Missense_Mutation p.K239N 0.09 tolerated(0.14) benign(0.345) TCGA-55-7574-01 17 43333147 43333147 C G SPATA32 Silent p.R134R 0.05 TCGA-55-7574-01 17 49280153 49280153 A G MBTD1 Silent p.D324D 0.07 TCGA-55-7574-01 17 56621265 56621265 C G C17orf47 Missense_Mutation p.E95Q 0.08 deleterious(0.01) possibly_damaging(0.859) TCGA-55-7574-01 17 65103325 65103325 G C HELZ Missense_Mutation p.S1734C 0.04 deleterious_low_confidence(0.04) unknown(0) TCGA-55-7574-01 17 71427671 71427671 C T SDK2 Missense_Mutation p.D484N 0.10 deleterious(0.04) possibly_damaging(0.88) TCGA-55-7574-01 17 72350304 72350304 G A KIF19 Missense_Mutation p.R771K 0.05 tolerated(0.96) benign(0.005) TCGA-55-7574-01 17 7573991 7573991 C A TP53 Nonsense_Mutation p.E346* 0.16 TCGA-55-7574-01 17 79410070 79410070 G C RP11-1055B8.7 Missense_Mutation p.K565N 0.08 probably_damaging(0.996) TCGA-55-7574-01 17 79875977 79875977 G A SIRT7 Missense_Mutation p.R11C 0.11 deleterious(0) probably_damaging(0.999) TCGA-55-7574-01 18 22804498 22804498 C T ZNF521 Silent p.E1128E 0.13 TCGA-55-7574-01 18 57103325 57103325 G T CCBE1 Missense_Mutation p.R346S 0.09 deleterious(0) probably_damaging(0.998) TCGA-55-7574-01 19 11031219 11031219 C T CARM1 Missense_Mutation p.S435L 0.08 deleterious(0.03) benign(0.147) TCGA-55-7574-01 19 11032406 11032406 G A CARM1 Silent p.P600P 0.08 TCGA-55-7574-01 19 1218415 1218415 G T STK11 Splice_Site p.X97_splice 0.16 TCGA-55-7574-01 19 12842184 12842184 C A C19orf43 Missense_Mutation p.A133S 0.15 deleterious(0.01) possibly_damaging(0.574) TCGA-55-7574-01 19 15760837 15760837 G A CYP4F3 Silent p.Q254Q 0.25 TCGA-55-7574-01 19 37643721 37643721 C - ZNF585A Frame_Shift_Del p.K306Rfs*9 0.15 TCGA-55-7574-01 19 3964802 3964802 C T DAPK3 Missense_Mutation p.E84K 0.13 deleterious(0) probably_damaging(0.995) TCGA-55-7574-01 19 41063206 41063206 G A SPTBN4 Missense_Mutation p.R1856Q 0.09 tolerated(0.42) possibly_damaging(0.477) TCGA-55-7574-01 19 41383245 41383245 C G CYP2A7 Missense_Mutation p.K337N 0.10 deleterious(0.01) possibly_damaging(0.677) TCGA-55-7574-01 19 42729969 42729969 C T ZNF526 Missense_Mutation p.H472Y 0.10 tolerated(0.13) probably_damaging(0.986) TCGA-55-7574-01 19 42853690 42853690 A C MEGF8 Missense_Mutation p.T713P 0.15 tolerated(0.09) benign(0.009) TCGA-55-7574-01 19 52568907 52568907 C A ZNF841 Missense_Mutation p.G743V 0.33 deleterious(0) probably_damaging(0.98) TCGA-55-7574-01 19 55670627 55670627 C G DNAAF3 Missense_Mutation p.D544H 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.792) TCGA-55-7574-01 19 56180086 56180086 C G U2AF2 Silent p.V291V 0.13 TCGA-55-7574-01 19 8326635 8326635 C G CERS4 Missense_Mutation p.F304L 0.11 deleterious(0.05) benign(0.246) TCGA-55-7574-01 19 8563881 8563881 T C PRAM1 Missense_Mutation p.K271E 0.25 tolerated(0.31) benign(0.341) TCGA-55-7574-01 19 9061796 9061796 C T MUC16 Silent p.P8550P 0.11 TCGA-55-7574-01 19 9213383 9213383 A T OR7G2 Nonsense_Mutation p.C200* 0.11 TCGA-55-7574-01 19 9226385 9226385 C T OR7G1 Missense_Mutation p.E19K 0.08 deleterious(0.03) benign(0.012) TCGA-55-7574-01 1 11980294 11980294 C G KIAA2013 3'UTR 0.04 TCGA-55-7574-01 1 146756095 146756095 G C CHD1L Missense_Mutation p.E593Q 0.08 tolerated(0.29) benign(0.016) TCGA-55-7574-01 1 1500188 1500188 C T SSU72 Silent p.Q63Q 0.08 TCGA-55-7574-01 1 150477190 150477190 G A TARS2 Missense_Mutation p.E601K 0.05 deleterious(0) probably_damaging(0.965) TCGA-55-7574-01 1 150482299 150482299 C T ECM1 Intron 0.07 TCGA-55-7574-01 1 151105617 151105617 G A SEMA6C Silent p.L744L 0.21 TCGA-55-7574-01 1 152284856 152284856 C T FLG Missense_Mutation p.D836N 0.06 possibly_damaging(0.684) TCGA-55-7574-01 1 153740270 153740270 C T INTS3 Silent p.L737L 0.08 TCGA-55-7574-01 1 155264172 155264172 C G PKLR Missense_Mutation p.D324H 0.09 deleterious(0.01) possibly_damaging(0.761) TCGA-55-7574-01 1 155292113 155292113 C A RUSC1 Missense_Mutation p.N183K 0.06 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-55-7574-01 1 156640010 156640010 G A NES Nonsense_Mutation p.Q1324* 0.05 TCGA-55-7574-01 1 156823675 156823675 C G INSRR Missense_Mutation p.G169A 0.26 tolerated(0.37) probably_damaging(0.997) TCGA-55-7574-01 1 158450443 158450443 C A OR10R2 Missense_Mutation p.S259Y 0.10 deleterious(0) probably_damaging(0.992) TCGA-55-7574-01 1 158576991 158576991 G C OR10Z1 Missense_Mutation p.A255P 0.19 deleterious(0.01) probably_damaging(1) TCGA-55-7574-01 1 162557435 162557435 A T UAP1 Silent p.V335V 0.09 TCGA-55-7574-01 1 178421649 178421649 C G RASAL2 Nonsense_Mutation p.S624* 0.04 TCGA-55-7574-01 1 1961823 1961823 T C GABRD 3'UTR 0.29 TCGA-55-7574-01 1 200776585 200776585 G T CAMSAP2 Missense_Mutation p.A161S 0.13 deleterious(0.04) benign(0.149) TCGA-55-7574-01 1 201009787 201009787 G T CACNA1S Missense_Mutation p.A1730E 0.14 tolerated_low_confidence(1) benign(0.001) TCGA-55-7574-01 1 203186907 203186907 C T CHIT1 Silent p.Q372Q 0.06 TCGA-55-7574-01 1 220091948 220091948 G C SLC30A10 Intron 0.17 TCGA-55-7574-01 1 228285621 228285621 G A ARF1 Silent p.R151R 0.06 TCGA-55-7574-01 1 22915468 22915468 T C EPHA8 Missense_Mutation p.Y362H 0.12 deleterious(0) possibly_damaging(0.88) TCGA-55-7574-01 1 232600659 232600659 C G SIPA1L2 Missense_Mutation p.R916T 0.07 deleterious(0) probably_damaging(0.997) TCGA-55-7574-01 1 233161085 233161085 C A PCNXL2 Missense_Mutation p.G1471V 0.11 deleterious(0) possibly_damaging(0.774) TCGA-55-7574-01 1 236205225 236205225 C G NID1 Missense_Mutation p.E374Q 0.14 tolerated(0.11) possibly_damaging(0.719) TCGA-55-7574-01 1 24406539 24406539 G A MYOM3 Silent p.V851V 0.08 TCGA-55-7574-01 1 248263108 248263108 T C OR2L13 Missense_Mutation p.I144T 0.11 tolerated(0.19) benign(0.395) TCGA-55-7574-01 1 248343457 248343457 C - OR2M2 Frame_Shift_Del p.M59Cfs*72 0.08 TCGA-55-7574-01 1 248512634 248512634 T G OR14C36 Silent p.S186S 0.11 TCGA-55-7574-01 1 248616344 248616344 G T OR2T2 Missense_Mutation p.M82I 0.04 tolerated(0.07) benign(0.053) TCGA-55-7574-01 1 248685329 248685329 C A OR2G6 Silent p.R128R 0.22 TCGA-55-7574-01 1 27992960 27992960 C G IFI6 Missense_Mutation p.G117R 0.12 deleterious(0) possibly_damaging(0.885) TCGA-55-7574-01 1 36888428 36888428 T A OSCP1 Silent p.A230A 0.16 TCGA-55-7574-01 1 42047735 42047735 C G HIVEP3 Missense_Mutation p.E912Q 0.06 benign(0.099) TCGA-55-7574-01 1 42047774 42047774 C G HIVEP3 Missense_Mutation p.E899Q 0.08 probably_damaging(0.997) TCGA-55-7574-01 1 43392632 43392632 G C SLC2A1 3'UTR 0.07 TCGA-55-7574-01 1 47403713 47403713 G T CYP4A11 Missense_Mutation p.Q98K 0.10 tolerated(0.29) benign(0.024) TCGA-55-7574-01 1 62190779 62190779 C G TM2D1 Missense_Mutation p.W67S 0.08 deleterious_low_confidence(0.01) benign(0.053) TCGA-55-7574-01 1 6528512 6528512 G A PLEKHG5 Missense_Mutation p.S874F 0.18 deleterious(0) probably_damaging(0.983) TCGA-55-7574-01 1 65332689 65332689 C T JAK1 Missense_Mutation p.E284K 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-55-7574-01 1 90180404 90180404 G A LRRC8C Missense_Mutation p.V759I 0.08 tolerated(0.1) benign(0) TCGA-55-7574-01 20 14306373 14306375 AAG - FLRT3 In_Frame_Del p.S593del 0.12 TCGA-55-7574-01 20 23066051 23066051 G A CD93 Missense_Mutation p.P260L 0.07 tolerated(0.07) possibly_damaging(0.642) TCGA-55-7574-01 20 3005234 3005234 G A PTPRA Silent p.G527G 0.05 TCGA-55-7574-01 20 33867900 33867900 C G EIF6 Missense_Mutation p.D131H 0.04 deleterious(0.03) possibly_damaging(0.732) TCGA-55-7574-01 20 33867912 33867912 C T EIF6 Missense_Mutation p.E127K 0.04 deleterious(0.02) benign(0.083) TCGA-55-7574-01 20 3725682 3725682 G C HSPA12B Missense_Mutation p.A134P 0.09 deleterious(0) possibly_damaging(0.908) TCGA-55-7574-01 20 47582495 47582495 G C ARFGEF2 Missense_Mutation p.D332H 0.14 tolerated(0.23) benign(0.019) TCGA-55-7574-01 20 485802 485802 T C CSNK2A1 Missense_Mutation p.N58S 0.14 tolerated(0.09) benign(0.027) TCGA-55-7574-01 20 9561232 9561232 C T PAK7 Missense_Mutation p.E184K 0.09 tolerated_low_confidence(0.26) benign(0.014) TCGA-55-7574-01 21 31691969 31691969 G T KRTAP26-1 Missense_Mutation p.L129I 0.16 tolerated(0.59) benign(0.005) TCGA-55-7574-01 21 33036154 33036154 G T SOD1 Missense_Mutation p.G42C 0.15 deleterious(0) probably_damaging(1) TCGA-55-7574-01 21 45741720 45741720 G T PFKL Missense_Mutation p.V434L 0.17 deleterious(0) benign(0.21) TCGA-55-7574-01 22 42221699 42221699 C G CCDC134 Intron 0.16 TCGA-55-7574-01 22 42605678 42605678 C A TCF20 Silent p.A1878A 0.04 TCGA-55-7574-01 22 44178131 44178131 G C EFCAB6 Nonsense_Mutation p.S23* 0.06 TCGA-55-7574-01 2 119727727 119727727 G T MARCO Missense_Mutation p.M79I 0.14 tolerated(0.64) benign(0.38) TCGA-55-7574-01 2 130877990 130877990 G A POTEF Silent p.P33P 0.09 TCGA-55-7574-01 2 131487352 131487352 C A GPR148 Missense_Mutation p.Q210K 0.12 tolerated(0.81) benign(0.005) TCGA-55-7574-01 2 136547323 136547323 G A LCT Missense_Mutation p.A1794V 0.09 tolerated(0.13) benign(0.001) TCGA-55-7574-01 2 141680547 141680547 G T LRP1B Silent p.S1102S 0.14 TCGA-55-7574-01 2 141680548 141680548 G T LRP1B Missense_Mutation p.S1102Y 0.15 probably_damaging(0.979) TCGA-55-7574-01 2 164468312 164468312 C G FIGN Missense_Mutation p.L10F 0.07 deleterious(0.01) possibly_damaging(0.86) TCGA-55-7574-01 2 165947170 165947170 T A SCN3A Missense_Mutation p.K1831N 0.08 deleterious(0.05) benign(0.117) TCGA-55-7574-01 2 170042448 170042448 C G LRP2 Missense_Mutation p.C3137S 0.09 probably_damaging(1) TCGA-55-7574-01 2 175957959 175957959 T C ATF2 Missense_Mutation p.T339A 0.11 deleterious(0.03) benign(0.079) TCGA-55-7574-01 2 179591958 179591958 C T TTN Missense_Mutation p.D6712N 0.12 TCGA-55-7574-01 2 196740445 196740445 C A DNAH7 Missense_Mutation p.M2080I 0.19 tolerated(0.21) benign(0.005) TCGA-55-7574-01 2 198950567 198950567 C G PLCL1 Missense_Mutation p.P776A 0.09 deleterious(0) probably_damaging(0.99) TCGA-55-7574-01 2 219602948 219602948 C G TTLL4 Silent p.L183L 0.05 TCGA-55-7574-01 2 233745891 233745891 G T NGEF Missense_Mutation p.A636D 0.14 deleterious(0) probably_damaging(1) TCGA-55-7574-01 2 234622209 234622209 C G UGT1A5 Missense_Mutation p.S191C 0.06 tolerated(0.05) possibly_damaging(0.823) TCGA-55-7574-01 2 24305854 24305854 C T TP53I3 Missense_Mutation p.E103K 0.09 tolerated(0.11) benign(0.038) TCGA-55-7574-01 2 25966745 25966745 G A ASXL2 Missense_Mutation p.P821S 0.07 tolerated_low_confidence(0.16) benign(0.009) TCGA-55-7574-01 2 30966341 30966341 C A CAPN13 Silent p.L451L 0.13 TCGA-55-7574-01 2 39963894 39963894 G A THUMPD2 Missense_Mutation p.S498L 0.10 tolerated(0.34) benign(0.003) TCGA-55-7574-01 2 40655756 40655756 G T SLC8A1 Silent p.I555I 0.08 TCGA-55-7574-01 2 53977961 53977961 G C ASB3 Missense_Mutation p.P140R 0.16 deleterious(0.02) probably_damaging(0.936) TCGA-55-7574-01 2 63816124 63816124 G C MDH1 5'Flank 0.06 TCGA-55-7574-01 2 85991111 85991111 C T ATOH8 Intron 0.13 TCGA-55-7574-01 2 89309562 89309562 C T IGKV1-9 Missense_Mutation p.G90R 0.10 deleterious(0.01) probably_damaging(0.927) TCGA-55-7574-01 2 9008594 9008594 C G MBOAT2 Missense_Mutation p.L323F 0.11 deleterious(0) probably_damaging(0.984) TCGA-55-7574-01 3 122632712 122632712 C T SEMA5B Missense_Mutation p.E763K 0.08 deleterious(0.03) probably_damaging(0.961) TCGA-55-7574-01 3 127439934 127439934 G A MGLL Silent p.L158L 0.10 TCGA-55-7574-01 3 129211017 129211017 G C IFT122 Missense_Mutation p.E727Q 0.06 tolerated(0.12) possibly_damaging(0.607) TCGA-55-7574-01 3 131388587 131388587 G A CPNE4 Missense_Mutation p.P205S 0.07 deleterious(0.02) benign(0.089) TCGA-55-7574-01 3 134851761 134851761 C - EPHB1 Frame_Shift_Del p.R390Afs*58 0.15 TCGA-55-7574-01 3 139065737 139065737 G C MRPS22 Missense_Mutation p.E64Q 0.08 tolerated(0.26) benign(0.015) TCGA-55-7574-01 3 14862303 14862303 G A FGD5 Silent p.R575R 0.10 TCGA-55-7574-01 3 164757724 164757724 G C SI Missense_Mutation p.T732S 0.06 tolerated(0.1) benign(0.016) TCGA-55-7574-01 3 178916873 178916873 G C PIK3CA Missense_Mutation p.R87T 0.06 deleterious(0) probably_damaging(0.998) TCGA-55-7574-01 3 183273442 183273442 C A KLHL6 5'UTR 0.17 TCGA-55-7574-01 3 193068888 193068888 A T ATP13A5 Missense_Mutation p.S237T 0.19 deleterious(0) probably_damaging(0.999) TCGA-55-7574-01 3 195516290 195516290 C G MUC4 Missense_Mutation p.D721H 0.04 unknown(0) TCGA-55-7574-01 3 195516684 195516684 C T MUC4 Missense_Mutation p.M589I 0.07 unknown(0) TCGA-55-7574-01 3 195516687 195516687 C T MUC4 Silent p.Q588Q 0.07 TCGA-55-7574-01 3 195518150 195518150 G C MUC4 Missense_Mutation p.L101V 0.08 unknown(0) TCGA-55-7574-01 3 195518254 195518254 G C MUC4 Missense_Mutation p.S66C 0.04 unknown(0) TCGA-55-7574-01 3 196388383 196388383 C G NRROS Silent p.L623L 0.04 TCGA-55-7574-01 3 49697957 49697957 G A BSN Silent p.V2893V 0.13 TCGA-55-7574-01 3 54905639 54905639 G A CACNA2D3 Missense_Mutation p.R567Q 0.09 tolerated(0.98) benign(0.124) TCGA-55-7574-01 3 68587954 68587954 G C FAM19A1 Missense_Mutation p.E103Q 0.12 deleterious(0.04) possibly_damaging(0.887) TCGA-55-7574-01 3 89259011 89259011 G A EPHA3 Nonsense_Mutation p.W52* 0.24 TCGA-55-7574-01 3 89521758 89521758 G C EPHA3 Missense_Mutation p.K945N 0.08 deleterious(0.04) probably_damaging(0.998) TCGA-55-7574-01 3 98251064 98251064 G T GPR15 Missense_Mutation p.G63C 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-55-7574-01 4 104084360 104084360 C T CENPE Silent p.K592K 0.23 TCGA-55-7574-01 4 10447569 10447569 C G ZNF518B Missense_Mutation p.R128S 0.07 deleterious(0) probably_damaging(0.994) TCGA-55-7574-01 4 114274912 114274912 A T ANK2 Missense_Mutation p.K1713I 0.06 possibly_damaging(0.885) TCGA-55-7574-01 4 126240995 126240995 G C FAT4 Missense_Mutation p.Q1143H 0.05 probably_damaging(1) TCGA-55-7574-01 4 128802194 128802194 G C PLK4 5'UTR 0.23 TCGA-55-7574-01 4 13606644 13606644 G C BOD1L1 Missense_Mutation p.P627R 0.10 possibly_damaging(0.839) TCGA-55-7574-01 4 139983041 139983041 C T ELF2 Missense_Mutation p.E250K 0.11 deleterious(0) probably_damaging(0.999) TCGA-55-7574-01 4 170613428 170613428 A G CLCN3 Missense_Mutation p.Y298C 0.07 tolerated(0.07) benign(0.009) TCGA-55-7574-01 4 189012482 189012482 C T TRIML2 3'UTR 0.16 TCGA-55-7574-01 4 189068192 189068192 G T TRIML1 Missense_Mutation p.C358F 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-7574-01 4 20525659 20525659 A G SLIT2 Missense_Mutation p.I433V 0.04 tolerated(0.45) benign(0.014) TCGA-55-7574-01 4 83838125 83838125 G A THAP9 Missense_Mutation p.G254S 0.08 deleterious(0) probably_damaging(0.999) TCGA-55-7574-01 4 85731329 85731329 G A WDFY3 Missense_Mutation p.H686Y 0.12 tolerated(0.12) benign(0.032) TCGA-55-7574-01 4 9982333 9982333 G T SLC2A9 Nonsense_Mutation p.Y188* 0.21 TCGA-55-7574-01 5 133295282 133295282 G C C5orf15 Nonsense_Mutation p.S190* 0.12 TCGA-55-7574-01 5 140432960 140432960 C G PCDHB1 Missense_Mutation p.D635E 0.07 deleterious(0.03) probably_damaging(0.999) TCGA-55-7574-01 5 140481446 140481446 T A PCDHB3 Missense_Mutation p.S405T 0.10 tolerated_low_confidence(1) benign(0) TCGA-55-7574-01 5 140603915 140603915 A T PCDHB14 Missense_Mutation p.T280S 0.12 tolerated_low_confidence(1) benign(0.016) TCGA-55-7574-01 5 140683204 140683204 C T SLC25A2 Missense_Mutation p.E77K 0.14 deleterious(0) possibly_damaging(0.901) TCGA-55-7574-01 5 140710633 140710633 G A PCDHGA1 Missense_Mutation p.D128N 0.16 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-55-7574-01 5 148411177 148411177 C G SH3TC2 Missense_Mutation p.E359Q 0.11 tolerated(0.27) benign(0.224) TCGA-55-7574-01 5 148632354 148632354 G A ABLIM3 Missense_Mutation p.R631K 0.06 deleterious(0.02) possibly_damaging(0.614) TCGA-55-7574-01 5 179192956 179192956 A G MAML1 Silent p.P315P 0.06 TCGA-55-7574-01 5 23526991 23526991 C A PRDM9 Missense_Mutation p.H598Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-7574-01 5 24498546 24498546 G T CDH10 Missense_Mutation p.F492L 0.17 tolerated(0.67) benign(0.015) TCGA-55-7574-01 5 26881129 26881129 G T CDH9 3'UTR 0.17 TCGA-55-7574-01 5 32010523 32010523 G A PDZD2 Missense_Mutation p.D448N 0.10 deleterious(0.01) probably_damaging(1) TCGA-55-7574-01 5 55083796 55083796 G A DDX4 Silent p.Q380Q 0.09 TCGA-55-7574-01 5 55083798 55083798 T A DDX4 Missense_Mutation p.I381N 0.11 deleterious(0) probably_damaging(1) TCGA-55-7574-01 5 66479858 66479858 G C CD180 Silent p.L271L 0.08 TCGA-55-7574-01 5 70805797 70805797 A T BDP1 Missense_Mutation p.T960S 0.21 tolerated(0.05) benign(0.044) TCGA-55-7574-01 5 75427941 75427941 G C SV2C Missense_Mutation p.E122D 0.13 tolerated(0.74) benign(0.008) TCGA-55-7574-01 5 89985761 89985761 G C GPR98 Missense_Mutation p.D2192H 0.20 probably_damaging(0.988) TCGA-55-7574-01 5 90667207 90667207 A T ARRDC3 3'UTR 0.10 TCGA-55-7574-01 5 908512 908512 A T TRIP13 Missense_Mutation p.T268S 0.11 tolerated(0.59) benign(0.016) TCGA-55-7574-01 6 122744757 122744757 G C HSF2 Missense_Mutation p.D368H 0.09 deleterious(0) probably_damaging(0.983) TCGA-55-7574-01 6 158492658 158492658 G C SYNJ2 Missense_Mutation p.K655N 0.07 deleterious(0) probably_damaging(0.998) TCGA-55-7574-01 6 159456967 159456967 G T TAGAP Silent p.T696T 0.20 TCGA-55-7574-01 6 161127552 161127552 G T PLG Nonsense_Mutation p.E55* 0.15 TCGA-55-7574-01 6 18222215 18222215 G A KDM1B Missense_Mutation p.A589T 0.09 deleterious_low_confidence(0.02) unknown(0) TCGA-55-7574-01 6 29079946 29079946 G T OR2J3 Missense_Mutation p.K93N 0.07 deleterious(0.01) possibly_damaging(0.723) TCGA-55-7574-01 6 3081338 3081338 C T RIPK1 Silent p.D149D 0.08 TCGA-55-7574-01 6 31869005 31869005 G A ZBTB12 Silent p.L26L 0.10 TCGA-55-7574-01 6 31911243 31911243 C G CFB Silent p.V349V 0.07 TCGA-55-7574-01 6 32134567 32134567 C A EGFL8 Missense_Mutation p.P105Q 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-55-7574-01 6 36710137 36710137 G A CPNE5 Missense_Mutation p.R564C 0.05 deleterious(0) possibly_damaging(0.724) TCGA-55-7574-01 6 38562074 38562074 G C BTBD9 Missense_Mutation p.S72C 0.08 deleterious(0) unknown(0) TCGA-55-7574-01 6 41126515 41126515 A C TREM2 Missense_Mutation p.L227R 0.08 tolerated_low_confidence(0.78) benign(0.002) TCGA-55-7574-01 6 46826925 46826925 G C GPR116 Silent p.L905L 0.11 TCGA-55-7574-01 6 55378876 55378876 G T HMGCLL1 Missense_Mutation p.S201Y 0.15 deleterious(0.01) probably_damaging(0.934) TCGA-55-7574-01 6 70070957 70070957 G T BAI3 Missense_Mutation p.E1264D 0.23 tolerated(0.47) benign(0.001) TCGA-55-7574-01 6 88854258 88854258 C T CNR1 Missense_Mutation p.V246M 0.11 deleterious(0.02) possibly_damaging(0.629) TCGA-55-7574-01 6 96034645 96034645 G T MANEA Missense_Mutation p.W110C 0.15 deleterious(0) probably_damaging(1) TCGA-55-7574-01 7 106509705 106509705 C G PIK3CG Missense_Mutation p.L567V 0.08 tolerated(0.27) possibly_damaging(0.759) TCGA-55-7574-01 7 122131426 122131426 C T CADPS2 Missense_Mutation p.E531K 0.33 deleterious(0) possibly_damaging(0.826) TCGA-55-7574-01 7 140390572 140390572 A C ADCK2 Missense_Mutation p.S567R 0.08 tolerated(0.15) benign(0.009) TCGA-55-7574-01 7 149528279 149528279 G T SSPO RNA 0.14 TCGA-55-7574-01 7 2696097 2696097 C T TTYH3 Silent p.L393L 0.10 TCGA-55-7574-01 7 2771079 2771079 G A GNA12 Silent p.F294F 0.08 TCGA-55-7574-01 7 45614412 45614412 G T ADCY1 Silent p.L90L 0.17 TCGA-55-7574-01 7 98528293 98528293 G C TRRAP Missense_Mutation p.R1144P 0.08 probably_damaging(0.979) TCGA-55-7574-01 7 99621545 99621545 C T ZKSCAN1 Missense_Mutation p.S139L 0.09 tolerated(0.82) probably_damaging(0.994) TCGA-55-7574-01 8 10468390 10468390 C A RP1L1 Missense_Mutation p.R1073L 0.19 benign(0.113) TCGA-55-7574-01 8 120844815 120844815 C T TAF2 5'UTR 0.10 TCGA-55-7574-01 8 133883593 133883593 G T TG Missense_Mutation p.C92F 0.12 deleterious(0) probably_damaging(1) TCGA-55-7574-01 8 144945369 144945369 C G EPPK1 Missense_Mutation p.E685Q 0.10 probably_damaging(1) TCGA-55-7574-01 8 145730156 145730156 C G GPT Silent p.V85V 0.09 TCGA-55-7574-01 8 145770662 145770662 C A ARHGAP39 Missense_Mutation p.R831L 0.18 deleterious(0) possibly_damaging(0.683) TCGA-55-7574-01 8 20110421 20110421 C A LZTS1 Nonsense_Mutation p.E341* 0.11 TCGA-55-7574-01 8 20110422 20110422 C A LZTS1 Missense_Mutation p.Q340H 0.11 deleterious(0.01) possibly_damaging(0.779) TCGA-55-7574-01 8 30706544 30706544 T A TEX15 5'UTR 0.14 TCGA-55-7574-01 8 36766899 36766899 C G KCNU1 Nonsense_Mutation p.S726* 0.12 TCGA-55-7574-01 9 116930955 116930955 G T COL27A1 Missense_Mutation p.A374S 0.09 unknown(0) TCGA-55-7574-01 9 123919802 123919802 G C CNTRL Missense_Mutation p.E1474Q 0.09 benign(0.356) TCGA-55-7574-01 9 127952063 127952063 G C PPP6C 5'UTR 0.36 TCGA-55-7574-01 9 34977173 34977173 G C KIAA1045 Missense_Mutation p.E315Q 0.07 deleterious(0.04) benign(0.048) TCGA-55-7574-01 9 5763244 5763244 G C KIAA1432 Silent p.L739L 0.04 TCGA-55-7574-01 9 79520851 79520851 G C PRUNE2 Missense_Mutation p.S10C 0.09 deleterious(0) possibly_damaging(0.72) TCGA-55-7574-01 9 96080730 96080730 G A C9orf129 Missense_Mutation p.P181S 0.08 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-55-7574-01 X 107160843 107160843 C A MID2 Missense_Mutation p.Q437K 0.06 tolerated(0.1) benign(0.19) TCGA-55-7574-01 X 110951607 110951607 G T ALG13 Missense_Mutation p.A246S 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-55-7574-01 X 119513442 119513442 G A ATP1B4 Missense_Mutation p.D343N 0.07 deleterious(0) probably_damaging(1) TCGA-55-7574-01 X 125685379 125685379 C A DCAF12L1 Missense_Mutation p.A405S 0.11 tolerated(0.15) benign(0.003) TCGA-55-7574-01 X 128599538 128599538 G A SMARCA1 Nonsense_Mutation p.Q997* 0.07 TCGA-55-7574-01 X 132160973 132160973 C G USP26 Missense_Mutation p.D426H 0.11 tolerated(0.21) benign(0.012) TCGA-55-7574-01 X 135426905 135426905 C A GPR112 Missense_Mutation p.S347Y 0.11 tolerated(0.16) benign(0.008) TCGA-55-7574-01 X 135960088 135960088 C A RBMX Missense_Mutation p.R125L 0.08 tolerated(0.27) benign(0.268) TCGA-55-7574-01 X 138827966 138827966 G T ATP11C Missense_Mutation p.T963K 0.11 deleterious(0) possibly_damaging(0.881) TCGA-55-7574-01 X 140270995 140270995 G C LDOC1 Missense_Mutation p.T71R 0.08 deleterious(0.01) probably_damaging(0.992) TCGA-55-7574-01 X 148037467 148037467 C A AFF2 Missense_Mutation p.P631H 0.10 deleterious(0) possibly_damaging(0.88) TCGA-55-7574-01 X 151124235 151124235 G C GABRE Silent p.L294L 0.06 TCGA-55-7574-01 X 151128375 151128375 C A GABRE Missense_Mutation p.W240C 0.08 deleterious(0) probably_damaging(0.998) TCGA-55-7574-01 X 151870301 151870301 C A MAGEA6 3'UTR 0.06 TCGA-55-7574-01 X 154221309 154221309 G A F8 Missense_Mutation p.S168F 0.08 tolerated(0.29) possibly_damaging(0.507) TCGA-55-7574-01 X 32841411 32841411 C A DMD Splice_Site p.X119_splice 0.04 TCGA-55-7574-01 X 47306910 47306910 C G ZNF41 Missense_Mutation p.Q753H 0.14 deleterious(0.01) possibly_damaging(0.839) TCGA-55-7574-01 X 53591666 53591666 C G HUWE1 Missense_Mutation p.E2300Q 0.05 possibly_damaging(0.637) TCGA-55-7574-01 X 53616620 53616620 G T HUWE1 Missense_Mutation p.L1450I 0.09 probably_damaging(0.987) TCGA-55-7574-01 X 63445529 63445529 A T ASB12 Translation_Start_Site p.M1? 0.27 deleterious_low_confidence(0) possibly_damaging(0.692) TCGA-55-7574-01 X 65253491 65253491 C T VSIG4 Silent p.Q79Q 0.11 TCGA-55-7574-01 X 66863140 66863140 C G AR Nonsense_Mutation p.Y553* 0.10 TCGA-55-7574-01 X 73811920 73811920 C G RLIM Missense_Mutation p.M410I 0.08 tolerated(0.05) unknown(0) TCGA-55-7574-01 X 78216469 78216469 G C P2RY10 Missense_Mutation p.G151A 0.23 tolerated(0.66) benign(0.002) TCGA-55-7576-01 10 105166456 105166456 C T PDCD11 Missense_Mutation p.S260L 0.17 tolerated(0.12) benign(0.004) TCGA-55-7576-01 10 120353761 120353761 G - PRLHR Frame_Shift_Del p.F333Sfs*25 0.09 TCGA-55-7576-01 10 128192773 128192773 G A C10orf90 Silent p.G332G 0.12 TCGA-55-7576-01 10 14950843 14950843 C T DCLRE1C Missense_Mutation p.S548N 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-7576-01 10 15290663 15290663 C A FAM171A1 Silent p.A243A 0.18 TCGA-55-7576-01 10 16942660 16942660 C G CUBN Missense_Mutation p.G2792R 0.28 tolerated(0.24) benign(0.246) TCGA-55-7576-01 10 43606878 43606878 C G RET Missense_Mutation p.A496G 0.16 deleterious(0.01) benign(0.325) TCGA-55-7576-01 10 50819100 50819100 G - SLC18A3 Frame_Shift_Del p.W105Cfs*18 0.18 TCGA-55-7576-01 10 5957452 5957452 G T FBXO18 Missense_Mutation p.A546S 0.16 deleterious(0) probably_damaging(0.994) TCGA-55-7576-01 10 8115719 8115719 T A GATA3 Silent p.T356T 0.13 TCGA-55-7576-01 10 85968063 85968063 C A CDHR1 Missense_Mutation p.S366Y 0.08 deleterious(0) possibly_damaging(0.707) TCGA-55-7576-01 10 89503231 89503231 C T PAPSS2 Missense_Mutation p.P442S 0.13 deleterious(0) probably_damaging(1) TCGA-55-7576-01 10 93213 93213 G A TUBB8 Silent p.A373A 0.17 TCGA-55-7576-01 10 97773580 97773580 T C CC2D2B Silent p.F118F 0.43 TCGA-55-7576-01 10 98180730 98180730 G T TLL2 Silent p.A302A 0.19 TCGA-55-7576-01 11 100933199 100933199 T A PGR Nonsense_Mutation p.K731* 0.30 TCGA-55-7576-01 11 111594504 111594504 C T SIK2 Missense_Mutation p.A811V 0.07 tolerated_low_confidence(0.38) benign(0.039) TCGA-55-7576-01 11 111594549 111594549 C T SIK2 Missense_Mutation p.P826L 0.13 tolerated_low_confidence(0.22) benign(0.002) TCGA-55-7576-01 11 119149351 119149351 A G CBL Silent p.P453P 0.20 TCGA-55-7576-01 11 119182639 119182639 C A MCAM Missense_Mutation p.R388S 0.17 tolerated(0.27) benign(0.158) TCGA-55-7576-01 11 123894335 123894335 G T OR10G9 Missense_Mutation p.A206S 0.13 tolerated(0.42) benign(0.114) TCGA-55-7576-01 11 124310129 124310129 G T OR8B8 Missense_Mutation p.L285I 0.32 deleterious_low_confidence(0.03) benign(0.12) TCGA-55-7576-01 11 125478177 125478177 G T STT3A Missense_Mutation p.M318I 0.31 tolerated(0.11) benign(0.039) TCGA-55-7576-01 11 20070445 20070445 G A NAV2 Silent p.K1381K 0.16 TCGA-55-7576-01 11 27077157 27077157 G T BBOX1 Silent p.V60V 0.27 TCGA-55-7576-01 11 4702881 4702881 A T OR51E2 3'UTR 0.36 TCGA-55-7576-01 11 47360146 47360146 C T MYBPC3 Missense_Mutation p.D745N 0.33 deleterious(0) probably_damaging(0.993) TCGA-55-7576-01 11 48177639 48177639 A G PTPRJ Missense_Mutation p.I1136V 0.06 tolerated(1) benign(0.002) TCGA-55-7576-01 11 5322778 5322778 A T OR51B4 Silent p.L133L 0.08 TCGA-55-7576-01 11 55033135 55033135 C A TRIM48 Missense_Mutation p.N173K 0.17 deleterious(0) benign(0.18) TCGA-55-7576-01 11 55136282 55136282 C A OR4A15 Missense_Mutation p.P308H 0.23 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-55-7576-01 11 55322196 55322196 C T OR4C15 Silent p.S138S 0.13 TCGA-55-7576-01 11 55322292 55322292 C T OR4C15 Silent p.A170A 0.06 TCGA-55-7576-01 11 55595447 55595447 C T OR5L2 Silent p.S251S 0.17 TCGA-55-7576-01 11 57379371 57379371 C T SERPING1 Missense_Mutation p.T404M 0.23 tolerated(0.05) benign(0.222) TCGA-55-7576-01 11 65360612 65360612 C T KCNK7 Missense_Mutation p.R263H 0.16 tolerated(0.17) benign(0.004) TCGA-55-7576-01 11 68822749 68822749 C G TPCN2 Missense_Mutation p.P120A 0.14 tolerated(0.1) benign(0.437) TCGA-55-7576-01 11 70171605 70171605 G T PPFIA1 Splice_Site p.X178_splice 0.39 TCGA-55-7576-01 11 7059831 7059831 C T NLRP14 Missense_Mutation p.S5L 0.10 tolerated(0.22) benign(0.001) TCGA-55-7576-01 11 73820134 73820134 C A C2CD3 Missense_Mutation p.W636L 0.42 deleterious(0) probably_damaging(1) TCGA-55-7576-01 11 73844552 73844552 T C C2CD3 Missense_Mutation p.M336V 0.10 deleterious(0) possibly_damaging(0.835) TCGA-55-7576-01 11 77702195 77702195 C T INTS4 Missense_Mutation p.V69I 0.14 tolerated(0.15) possibly_damaging(0.879) TCGA-55-7576-01 11 7982770 7982770 G A NLRP10 Missense_Mutation p.P130L 0.22 tolerated(0.07) benign(0.03) TCGA-55-7576-01 11 82549566 82549566 C T PRCP Missense_Mutation p.M400I 0.21 tolerated(0.05) possibly_damaging(0.893) TCGA-55-7576-01 11 9051430 9051430 C G SCUBE2 Splice_Site p.X778_splice 0.05 TCGA-55-7576-01 11 93822121 93822121 G A HEPHL1 Missense_Mutation p.A761T 0.10 tolerated(0.52) benign(0.007) TCGA-55-7576-01 12 114386709 114386709 C A RBM19 Missense_Mutation p.G402V 0.15 deleterious(0) probably_damaging(0.994) TCGA-55-7576-01 12 114386710 114386710 C A RBM19 Nonsense_Mutation p.G402* 0.15 TCGA-55-7576-01 12 121766294 121766294 C G ANAPC5 Missense_Mutation p.A377P 0.08 deleterious(0.01) probably_damaging(0.952) TCGA-55-7576-01 12 124097728 124097728 A T DDX55 Silent p.A251A 0.14 TCGA-55-7576-01 12 130912804 130912804 C T RIMBP2 Missense_Mutation p.E761K 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-7576-01 12 132416843 132416843 G T PUS1 Missense_Mutation p.A143S 0.20 deleterious(0) probably_damaging(0.984) TCGA-55-7576-01 12 21069086 21069086 G T SLCO1B3 Nonsense_Mutation p.E672* 0.51 TCGA-55-7576-01 12 21970206 21970206 C A ABCC9 Missense_Mutation p.L1269F 0.07 deleterious(0.03) benign(0.124) TCGA-55-7576-01 12 22208541 22208541 G T CMAS Nonsense_Mutation p.G186* 0.41 TCGA-55-7576-01 12 22208542 22208542 G T CMAS Missense_Mutation p.G186V 0.40 deleterious(0.01) benign(0.375) TCGA-55-7576-01 12 25398285 25398285 C T KRAS Missense_Mutation p.G12S 0.62 deleterious(0.03) possibly_damaging(0.644) TCGA-55-7576-01 12 3040232 3040232 C T TULP3 Silent p.A174A 0.26 TCGA-55-7576-01 12 32140239 32140239 A C KIAA1551 Missense_Mutation p.K1690T 0.13 deleterious(0) benign(0.15) TCGA-55-7576-01 12 32145496 32145499 ACTG CCT KIAA1551 3'UTR 0.13 TCGA-55-7576-01 12 44189384 44189384 G T TWF1 3'UTR 0.05 TCGA-55-7576-01 12 44782260 44782260 A T TMEM117 Silent p.R450R 0.08 TCGA-55-7576-01 12 45568182 45568182 C T PLEKHA8P1 RNA 0.18 TCGA-55-7576-01 12 52797629 52797629 C T KRT82 Missense_Mutation p.R159K 0.14 tolerated(1) benign(0.016) TCGA-55-7576-01 12 52881579 52881579 G T KRT6A Missense_Mutation p.S540R 0.35 tolerated(0.45) unknown(0) TCGA-55-7576-01 12 54402986 54402986 C A HOXC8 5'UTR 0.21 TCGA-55-7576-01 12 56222188 56222188 T A DNAJC14 Missense_Mutation p.R85S 0.13 deleterious_low_confidence(0.03) benign(0.021) TCGA-55-7576-01 12 57662237 57662237 G A R3HDM2 Missense_Mutation p.P613S 0.21 tolerated(0.71) benign(0.021) TCGA-55-7576-01 12 58025111 58025111 A C B4GALNT1 Missense_Mutation p.S85R 0.14 tolerated(0.43) benign(0.002) TCGA-55-7576-01 12 72233547 72233547 G T TBC1D15 5'UTR 0.17 TCGA-55-7576-01 12 7639341 7639341 C T CD163 Missense_Mutation p.G738S 0.28 deleterious(0) possibly_damaging(0.802) TCGA-55-7576-01 12 7640527 7640527 G C CD163 Missense_Mutation p.S526C 0.10 deleterious(0) probably_damaging(1) TCGA-55-7576-01 12 78225320 78225320 C A NAV3 Missense_Mutation p.P27T 0.34 tolerated_low_confidence(0.07) probably_damaging(0.999) TCGA-55-7576-01 12 78443862 78443862 G A NAV3 Missense_Mutation p.G705R 0.14 deleterious(0) probably_damaging(1) TCGA-55-7576-01 12 7882323 7882323 C A CLEC4C Missense_Mutation p.G171C 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-55-7576-01 12 86199740 86199740 T C RASSF9 Silent p.R16R 0.13 TCGA-55-7576-01 12 99093342 99093342 A G APAF1 Missense_Mutation p.I821V 0.20 tolerated(1) benign(0.001) TCGA-55-7576-01 13 30091719 30091719 T A SLC7A1 Missense_Mutation p.S501C 0.23 tolerated(0.21) benign(0.003) TCGA-55-7576-01 13 38210990 38210990 G A TRPC4 3'UTR 0.19 TCGA-55-7576-01 13 47315804 47315804 C G LRCH1 Missense_Mutation p.L705V 0.21 deleterious(0) probably_damaging(0.978) TCGA-55-7576-01 13 53049190 53049190 A T CKAP2 Missense_Mutation p.T656S 0.19 tolerated(0.79) benign(0.007) TCGA-55-7576-01 13 53617317 53617317 C A OLFM4 Silent p.I216I 0.25 TCGA-55-7576-01 14 101200875 101200875 C T DLK1 Missense_Mutation p.A265V 0.29 tolerated(0.33) benign(0.024) TCGA-55-7576-01 14 102717268 102717268 C A MOK Silent p.P157P 0.07 TCGA-55-7576-01 14 105412058 105412058 G C AHNAK2 Missense_Mutation p.P3244A 0.34 probably_damaging(0.994) TCGA-55-7576-01 14 105521918 105521918 C G GPR132 5'UTR 0.24 TCGA-55-7576-01 14 105814896 105814896 G T PACS2 Silent p.V62V 0.24 TCGA-55-7576-01 14 106174744 106174744 C T IGHA1 Missense_Mutation p.V87M 0.08 deleterious(0) probably_damaging(0.999) TCGA-55-7576-01 14 106757900 106757900 G A IGHV2-26 Missense_Mutation p.T36I 0.09 deleterious(0.02) benign(0.07) TCGA-55-7576-01 14 19553651 19553651 A T POTEG Missense_Mutation p.N79Y 0.13 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-55-7576-01 14 19553652 19553652 A T POTEG Missense_Mutation p.N79I 0.12 tolerated_low_confidence(0.13) benign(0.094) TCGA-55-7576-01 14 20585973 20585973 C G OR4K17 Missense_Mutation p.H136Q 0.19 deleterious(0) probably_damaging(0.997) TCGA-55-7576-01 14 20612644 20612644 G T OR4N5 Missense_Mutation p.M250I 0.40 tolerated(0.51) probably_damaging(0.997) TCGA-55-7576-01 14 22037988 22037988 C T OR10G3 Silent p.V296V 0.16 TCGA-55-7576-01 14 22636775 22636775 G T TRAV30 Missense_Mutation p.K76N 0.17 benign(0.406) TCGA-55-7576-01 14 39815112 39815112 A G CTAGE5 Silent p.Q617Q 0.17 TCGA-55-7576-01 14 52186968 52186968 G T FRMD6 Missense_Mutation p.G407V 0.12 tolerated(0.1) benign(0.053) TCGA-55-7576-01 14 58471883 58471883 C A C14orf37 Silent p.G713G 0.18 TCGA-55-7576-01 14 58830971 58830972 - A ARID4A Frame_Shift_Ins p.N724Kfs*2 0.14 TCGA-55-7576-01 14 70634104 70634104 G T SLC8A3 Missense_Mutation p.H346N 0.24 tolerated(0.21) benign(0.009) TCGA-55-7576-01 14 93649946 93649946 T G MOAP1 Silent p.A214A 0.07 TCGA-55-7576-01 14 95081052 95081052 C T SERPINA3 Missense_Mutation p.H92Y 0.14 deleterious(0) possibly_damaging(0.478) TCGA-55-7576-01 14 99182651 99182651 C G C14orf177 Missense_Mutation p.C41W 0.17 deleterious_low_confidence(0) benign(0.052) TCGA-55-7576-01 15 22332456 22332456 C A RP11-69H14.6 RNA 0.17 TCGA-55-7576-01 15 25488790 25488790 T G SNORD115-40 RNA 0.15 TCGA-55-7576-01 15 31320551 31320551 G T TRPM1 Missense_Mutation p.L1110M 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-55-7576-01 15 35529684 35529684 G T ANP32AP1 RNA 0.23 TCGA-55-7576-01 15 40659393 40659393 C T DISP2 Silent p.D360D 0.13 TCGA-55-7576-01 15 41796779 41796779 C T LTK Missense_Mutation p.R727H 0.19 tolerated_low_confidence(0.46) benign(0.001) TCGA-55-7576-01 15 54305743 54305743 G T UNC13C Missense_Mutation p.D215Y 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-7576-01 15 57734609 57734609 A G CGNL1 Missense_Mutation p.N579S 0.19 deleterious(0.04) probably_damaging(0.968) TCGA-55-7576-01 15 66034066 66034066 T C DENND4A Silent p.V206V 0.26 TCGA-55-7576-01 15 71124472 71124472 G T LARP6 Silent p.P465P 0.26 TCGA-55-7576-01 15 81624961 81624961 G T TMC3 Missense_Mutation p.F1034L 0.15 tolerated_low_confidence(1) benign(0.001) TCGA-55-7576-01 15 84659957 84659957 C A ADAMTSL3 Missense_Mutation p.P1322T 0.43 deleterious(0.02) possibly_damaging(0.654) TCGA-55-7576-01 15 88472411 88472411 A T NTRK3 Intron 0.07 TCGA-55-7576-01 15 88522528 88522528 C - NTRK3 Intron 0.24 TCGA-55-7576-01 15 88669511 88669511 C A NTRK3 Nonsense_Mutation p.G463* 0.22 TCGA-55-7576-01 15 91490084 91490084 G T UNC45A Silent p.S480S 0.56 TCGA-55-7576-01 16 14540779 14540779 T A PARN Missense_Mutation p.K610N 0.22 tolerated_low_confidence(0.15) benign(0.009) TCGA-55-7576-01 16 18847769 18847769 T C SMG1 Missense_Mutation p.I2564V 0.26 tolerated(0.19) possibly_damaging(0.847) TCGA-55-7576-01 16 1961868 1961868 C T HS3ST6 Missense_Mutation p.R220H 0.05 deleterious(0.02) benign(0.427) TCGA-55-7576-01 16 1994846 1994846 C A RPL3L Missense_Mutation p.D406Y 0.22 deleterious_low_confidence(0) benign(0.172) TCGA-55-7576-01 16 20335184 20335184 C A GP2 Silent p.V163V 0.19 TCGA-55-7576-01 16 20974768 20974768 G A DNAH3 Missense_Mutation p.R3480W 0.11 deleterious(0) probably_damaging(1) TCGA-55-7576-01 16 20975261 20975261 C A DNAH3 Missense_Mutation p.E3315D 0.11 tolerated(1) benign(0.009) TCGA-55-7576-01 16 24931498 24931498 G C ARHGAP17 Missense_Mutation p.R867G 0.15 tolerated_low_confidence(0.08) benign(0.002) TCGA-55-7576-01 16 321439 321439 C A RGS11 Silent p.A236A 0.28 TCGA-55-7576-01 16 4941886 4941886 C A PPL Nonsense_Mutation p.E632* 0.05 TCGA-55-7576-01 16 65397156 65397156 G T LINC00922 RNA 0.49 TCGA-55-7576-01 16 68404942 68404942 G C SMPD3 Nonsense_Mutation p.Y381* 0.16 TCGA-55-7576-01 16 68712482 68712482 G A CDH3 Missense_Mutation p.V157I 0.05 tolerated(0.47) benign(0.04) TCGA-55-7576-01 16 70906048 70906048 G A HYDIN Silent p.C3661C 0.12 TCGA-55-7576-01 16 71703215 71703215 C G PHLPP2 Missense_Mutation p.D531H 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-55-7576-01 16 78198109 78198109 C T WWOX Missense_Mutation p.H147Y 0.41 deleterious(0) possibly_damaging(0.781) TCGA-55-7576-01 16 89167225 89167225 G T ACSF3 Missense_Mutation p.V46L 0.63 deleterious(0.04) benign(0.165) TCGA-55-7576-01 16 9858403 9858403 C T GRIN2A Missense_Mutation p.V1000M 0.13 tolerated(0.12) probably_damaging(0.982) TCGA-55-7576-01 17 20209395 20209395 G - SPECC1 Frame_Shift_Del 0.28 TCGA-55-7576-01 17 21201776 21201776 C G MAP2K3 Missense_Mutation p.P34R 0.15 deleterious(0) benign(0.08) TCGA-55-7576-01 17 26667374 26667374 C A TNFAIP1 Missense_Mutation p.T82N 0.25 tolerated(0.2) benign(0.371) TCGA-55-7576-01 17 29631427 29631427 G A EVI2B Missense_Mutation p.L401F 0.37 tolerated(0.31) probably_damaging(0.934) TCGA-55-7576-01 17 3101695 3101695 A T OR1A2 Missense_Mutation p.M295L 0.52 tolerated(0.2) benign(0.142) TCGA-55-7576-01 17 34391718 34391718 G T CCL18 Missense_Mutation p.A6S 0.17 tolerated(0.06) possibly_damaging(0.527) TCGA-55-7576-01 17 37187708 37187708 G T CTD-2206N4.2 5'Flank 0.25 TCGA-55-7576-01 17 40269943 40269943 C A KAT2A Missense_Mutation p.G425W 0.10 tolerated(0.1) possibly_damaging(0.571) TCGA-55-7576-01 17 40832577 40832577 G A CCR10 Missense_Mutation p.P28L 0.10 deleterious(0) probably_damaging(0.999) TCGA-55-7576-01 17 41168010 41168010 G C VAT1 3'UTR 0.05 TCGA-55-7576-01 17 42992768 42992768 G T GFAP Silent p.R29R 0.11 TCGA-55-7576-01 17 43912021 43912021 G T CRHR1 Missense_Mutation p.R409L 0.25 deleterious(0) probably_damaging(0.935) TCGA-55-7576-01 17 45361945 45361945 C T ITGB3 Silent p.T166T 0.26 TCGA-55-7576-01 17 47120823 47120823 G T IGF2BP1 Missense_Mutation p.A371S 0.39 tolerated(0.87) benign(0.006) TCGA-55-7576-01 17 47590270 47590270 A T NGFR Missense_Mutation p.S395C 0.12 tolerated(0.23) probably_damaging(0.973) TCGA-55-7576-01 17 57057803 57057803 A G PPM1E Missense_Mutation p.Q560R 0.33 tolerated_low_confidence(0.11) benign(0.005) TCGA-55-7576-01 17 57474597 57474597 A C YPEL2 3'UTR 0.36 TCGA-55-7576-01 17 58308919 58308919 G A USP32 Intron 0.41 TCGA-55-7576-01 17 61911557 61911557 C G SMARCD2 Missense_Mutation p.E351D 0.61 tolerated(0.29) probably_damaging(0.992) TCGA-55-7576-01 17 67532289 67532289 C A MAP2K6 Nonsense_Mutation p.Y305* 0.12 TCGA-55-7576-01 17 7576897 7576897 G A TP53 Nonsense_Mutation p.Q317* 0.41 TCGA-55-7576-01 17 78321620 78321620 C T RNF213 Missense_Mutation p.P3162L 0.11 probably_damaging(1) TCGA-55-7576-01 17 79954652 79954652 G T ASPSCR1 Missense_Mutation p.G288V 0.11 tolerated(0.05) unknown(0) TCGA-55-7576-01 17 8219340 8219340 C T ARHGEF15 Silent p.D526D 0.21 TCGA-55-7576-01 18 14132396 14132396 A G ZNF519 5'UTR 0.19 TCGA-55-7576-01 18 14851707 14851707 C T ANKRD30B Missense_Mutation p.T1136I 0.22 deleterious(0.05) possibly_damaging(0.55) TCGA-55-7576-01 18 28666625 28666625 C A DSC2 Missense_Mutation p.G286W 0.23 deleterious(0) possibly_damaging(0.895) TCGA-55-7576-01 18 29205519 29205519 C G B4GALT6 3'UTR 0.33 TCGA-55-7576-01 18 51013224 51013224 T C DCC Missense_Mutation p.L1265P 0.09 deleterious(0) benign(0.383) TCGA-55-7576-01 18 51858176 51858176 G C STARD6 Silent p.S107S 0.15 TCGA-55-7576-01 18 56412910 56412910 G A MALT1 Missense_Mutation p.D642N 0.13 deleterious(0.02) possibly_damaging(0.827) TCGA-55-7576-01 18 60036664 60036664 C T TNFRSF11A Missense_Mutation p.A505V 0.10 tolerated(0.16) benign(0.007) TCGA-55-7576-01 18 67872909 67872909 C A RTTN 5'UTR 0.24 TCGA-55-7576-01 19 10794699 10794699 C T ILF3 Intron 0.29 TCGA-55-7576-01 19 14991763 14991763 G A OR7A17 Silent p.I135I 0.52 TCGA-55-7576-01 19 19822589 19822592 TCTC - ZNF14 Frame_Shift_Del p.E500Nfs*205 0.15 TCGA-55-7576-01 19 2251711 2251711 C T AMH Missense_Mutation p.P480S 0.24 deleterious(0) probably_damaging(1) TCGA-55-7576-01 19 24102739 24102739 T A ZNF726 Intron 0.30 TCGA-55-7576-01 19 31025799 31025799 C G ZNF536 Missense_Mutation p.A739G 0.10 tolerated(0.11) benign(0.285) TCGA-55-7576-01 19 31040344 31040344 C T ZNF536 Missense_Mutation p.S1273F 0.13 deleterious_low_confidence(0) benign(0.309) TCGA-55-7576-01 19 31767742 31767742 C G TSHZ3 Missense_Mutation p.R986T 0.16 deleterious(0) probably_damaging(0.972) TCGA-55-7576-01 19 3623819 3623819 C A CACTIN Missense_Mutation p.R170L 0.30 deleterious(0) probably_damaging(0.987) TCGA-55-7576-01 19 36430711 36430711 C T LRFN3 Silent p.R128R 0.11 TCGA-55-7576-01 19 37210634 37210634 G T ZNF567 Silent p.S305S 0.11 TCGA-55-7576-01 19 3779703 3779703 C A MATK Missense_Mutation p.V280F 0.20 tolerated(0.1) benign(0.232) TCGA-55-7576-01 19 39924275 39924275 T C RPS16 Intron 0.25 TCGA-55-7576-01 19 40433095 40433095 A T FCGBP Missense_Mutation p.S392T 0.22 benign(0.339) TCGA-55-7576-01 19 41599626 41599626 C A CYP2A13 Missense_Mutation p.T308N 0.12 deleterious(0.03) probably_damaging(1) TCGA-55-7576-01 19 43373130 43373130 C T PSG1 Missense_Mutation p.D256N 0.04 tolerated(1) possibly_damaging(0.729) TCGA-55-7576-01 19 44501471 44501471 G T ZNF155 Missense_Mutation p.D499Y 0.04 deleterious(0.01) possibly_damaging(0.891) TCGA-55-7576-01 19 48305244 48305244 C A TPRX1 Missense_Mutation p.D342Y 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.646) TCGA-55-7576-01 19 51274268 51274268 G T GPR32 Silent p.V137V 0.11 TCGA-55-7576-01 19 55246763 55246763 C A KIR3DL3 Silent p.V331V 0.34 TCGA-55-7576-01 19 55494735 55494735 T A NLRP2 Missense_Mutation p.S557T 0.14 deleterious(0) benign(0.041) TCGA-55-7576-01 19 55967772 55967772 G - ISOC2 Frame_Shift_Del p.R28Afs*30 0.16 TCGA-55-7576-01 19 56321418 56321418 G A NLRP11 Silent p.L186L 0.30 TCGA-55-7576-01 19 56388492 56388492 C T NLRP4 Missense_Mutation p.R886W 0.09 deleterious(0.04) benign(0.195) TCGA-55-7576-01 19 6495758 6495758 C T TUBB4A Missense_Mutation p.R251H 0.09 tolerated_low_confidence(0.06) benign(0.152) TCGA-55-7576-01 19 9069370 9069370 G A MUC16 Missense_Mutation p.H6026Y 0.25 unknown(0) TCGA-55-7576-01 19 9578992 9578992 C T ZNF560 Missense_Mutation p.E211K 0.28 tolerated(1) benign(0.024) TCGA-55-7576-01 1 103471818 103471818 C A COL11A1 Missense_Mutation p.R579S 0.16 unknown(0) TCGA-55-7576-01 1 109524457 109524457 C T WDR47 Missense_Mutation p.G774S 0.07 deleterious(0.04) probably_damaging(1) TCGA-55-7576-01 1 112045664 112045664 C T ADORA3 Missense_Mutation p.A105T 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.825) TCGA-55-7576-01 1 11737658 11737658 G A MAD2L2 Missense_Mutation p.P58L 0.18 deleterious(0) probably_damaging(0.995) TCGA-55-7576-01 1 11866328 11866328 G A CLCN6 Silent p.G3G 0.12 TCGA-55-7576-01 1 12186282 12186282 T G TNFRSF8 Missense_Mutation p.L433R 0.13 tolerated(0.57) benign(0.441) TCGA-55-7576-01 1 12186294 12186294 G A TNFRSF8 Splice_Site p.X437_splice 0.12 TCGA-55-7576-01 1 145282124 145282124 T G NOTCH2NL 3'UTR 0.19 TCGA-55-7576-01 1 151860831 151860831 T C THEM4 Missense_Mutation p.M159V 0.54 deleterious(0.05) benign(0.189) TCGA-55-7576-01 1 152127445 152127445 G T RPTN Silent p.G710G 0.50 TCGA-55-7576-01 1 152192519 152192519 C A HRNR Missense_Mutation p.G529V 0.05 unknown(0) TCGA-55-7576-01 1 157667244 157667244 G T FCRL3 Intron 0.09 TCGA-55-7576-01 1 15807590 15807590 C A CELA2B Intron 0.17 TCGA-55-7576-01 1 158225078 158225078 G A CD1A Missense_Mutation p.R88H 0.18 tolerated(0.46) benign(0.005) TCGA-55-7576-01 1 158262005 158262005 G T CD1C Missense_Mutation p.G154C 0.14 deleterious(0.01) benign(0.152) TCGA-55-7576-01 1 158549373 158549373 C T OR10X1 Missense_Mutation p.R106K 0.07 tolerated(0.25) benign(0.014) TCGA-55-7576-01 1 158627350 158627350 G T SPTA1 Missense_Mutation p.L908M 0.09 deleterious(0.05) probably_damaging(1) TCGA-55-7576-01 1 158670208 158670208 G C OR6K2 Missense_Mutation p.P79A 0.11 deleterious(0) probably_damaging(1) TCGA-55-7576-01 1 158724731 158724731 C G OR6K6 Missense_Mutation p.F42L 0.06 tolerated(0.48) benign(0.079) TCGA-55-7576-01 1 159283771 159283771 G T OR10J3 Missense_Mutation p.L227I 0.54 deleterious(0) probably_damaging(0.954) TCGA-55-7576-01 1 161681008 161681008 C A FCRLA Silent p.I104I 0.49 TCGA-55-7576-01 1 161681009 161681009 C T FCRLA Missense_Mutation p.L105F 0.48 deleterious(0) probably_damaging(1) TCGA-55-7576-01 1 162740157 162740157 G C DDR2 Missense_Mutation p.M453I 0.11 tolerated(0.61) benign(0.002) TCGA-55-7576-01 1 164761873 164761873 T C PBX1 Silent p.S136S 0.10 TCGA-55-7576-01 1 167096268 167096268 C T DUSP27 Missense_Mutation p.R634W 0.14 deleterious(0) possibly_damaging(0.881) TCGA-55-7576-01 1 171505341 171505341 G T PRRC2C Missense_Mutation p.W737C 0.46 unknown(0) TCGA-55-7576-01 1 175292530 175292530 A T TNR Missense_Mutation p.L1347H 0.09 deleterious(0.03) benign(0.176) TCGA-55-7576-01 1 176659540 176659540 C T PAPPA2 Missense_Mutation p.P802L 0.06 deleterious(0) probably_damaging(1) TCGA-55-7576-01 1 176738905 176738905 C T PAPPA2 Missense_Mutation p.P1496S 0.20 deleterious(0) probably_damaging(1) TCGA-55-7576-01 1 176759022 176759022 C A PAPPA2 Missense_Mutation p.P1598H 0.22 deleterious(0.01) probably_damaging(1) TCGA-55-7576-01 1 177250481 177250481 C T BRINP2 Silent p.L723L 0.11 TCGA-55-7576-01 1 179833976 179833976 T C IFRG15 Silent p.L112L 0.20 TCGA-55-7576-01 1 182640815 182640815 C A RGS8 Missense_Mutation p.Q19H 0.33 deleterious_low_confidence(0.01) benign(0.307) TCGA-55-7576-01 1 19166739 19166739 G A TAS1R2 Missense_Mutation p.P625L 0.15 deleterious(0.04) probably_damaging(0.914) TCGA-55-7576-01 1 196438174 196438174 G T KCNT2 Silent p.R137R 0.21 TCGA-55-7576-01 1 197026189 197026189 C T F13B Silent p.E375E 0.25 TCGA-55-7576-01 1 197070480 197070480 T C ASPM Missense_Mutation p.H2634R 0.36 tolerated(0.34) benign(0.178) TCGA-55-7576-01 1 201777944 201777944 C A NAV1 Silent p.R1384R 0.10 TCGA-55-7576-01 1 203468946 203468946 C A OPTC Silent p.L233L 0.23 TCGA-55-7576-01 1 204924038 204924038 C A NFASC Missense_Mutation p.P165Q 0.24 deleterious(0) probably_damaging(1) TCGA-55-7576-01 1 215847560 215847560 A C USH2A Missense_Mutation p.Y4565D 0.04 probably_damaging(1) TCGA-55-7576-01 1 22188551 22188551 C A HSPG2 Nonsense_Mutation p.G1600* 0.41 TCGA-55-7576-01 1 222838929 222838929 G C MIA3 Missense_Mutation p.D1898H 0.05 deleterious(0) probably_damaging(0.935) TCGA-55-7576-01 1 224804820 224804820 G T CNIH3 5'UTR 0.29 TCGA-55-7576-01 1 237819198 237819198 G T RYR2 Missense_Mutation p.M2681I 0.57 benign(0.103) TCGA-55-7576-01 1 24202088 24202088 G T CNR2 Missense_Mutation p.T7K 0.31 tolerated(0.31) benign(0.019) TCGA-55-7576-01 1 247587721 247587721 G T NLRP3 Nonsense_Mutation p.E326* 0.06 TCGA-55-7576-01 1 247752559 247752559 G C OR2G2 Missense_Mutation p.V300L 0.26 deleterious(0.01) unknown(0) TCGA-55-7576-01 1 247875588 247875588 G C OR6F1 Missense_Mutation p.A157G 0.26 tolerated(0.23) benign(0.217) TCGA-55-7576-01 1 248262885 248262885 C T OR2L13 Silent p.L70L 0.16 TCGA-55-7576-01 1 248616587 248616587 C A OR2T2 Silent p.V163V 0.19 TCGA-55-7576-01 1 248737448 248737448 G T OR2T34 Missense_Mutation p.T204K 0.18 deleterious(0) benign(0.002) TCGA-55-7576-01 1 25573269 25573269 G A C1orf63 Silent p.S62S 0.21 TCGA-55-7576-01 1 33956991 33956991 A G ZSCAN20 Missense_Mutation p.Y378C 0.16 tolerated(0.09) probably_damaging(1) TCGA-55-7576-01 1 35260515 35260515 G A GJA4 Missense_Mutation p.R234H 0.14 deleterious(0.01) benign(0.002) TCGA-55-7576-01 1 46976208 46976208 C A DMBX1 Missense_Mutation p.A72E 0.28 deleterious(0) probably_damaging(0.978) TCGA-55-7576-01 1 52841232 52841232 T C ORC1 Missense_Mutation p.I725V 0.36 deleterious(0.02) possibly_damaging(0.831) TCGA-55-7576-01 1 57349265 57349265 C A C8A Missense_Mutation p.P256T 0.15 tolerated(0.38) benign(0.15) TCGA-55-7576-01 1 6387461 6387461 C A ACOT7 Nonsense_Mutation p.E185* 0.12 TCGA-55-7576-01 1 70504893 70504893 C G LRRC7 Missense_Mutation p.P1091R 0.36 tolerated(0.38) probably_damaging(0.999) TCGA-55-7576-01 1 76356386 76356386 A T MSH4 Silent p.A744A 0.20 TCGA-55-7576-01 1 79101021 79101021 G T IFI44L Splice_Site p.X242_splice 0.19 TCGA-55-7576-01 1 89726426 89726426 C A GBP5 Missense_Mutation p.Q574H 0.14 tolerated(0.08) benign(0.015) TCGA-55-7576-01 1 98015199 98015199 C A DPYD Missense_Mutation p.D481Y 0.22 deleterious(0) probably_damaging(0.997) TCGA-55-7576-01 1 98187196 98187196 G C DPYD Missense_Mutation p.S118C 0.14 deleterious(0) probably_damaging(1) TCGA-55-7576-01 20 25457247 25457247 C A NINL Missense_Mutation p.A894S 0.30 tolerated(0.31) benign(0.003) TCGA-55-7576-01 20 2592980 2592980 G - TMC2 Frame_Shift_Del p.G580Afs*5 0.10 TCGA-55-7576-01 20 31367913 31367913 C T DNMT3B Intron 0.46 TCGA-55-7576-01 20 32026748 32026748 C G SNTA1 Missense_Mutation p.G132A 0.07 deleterious(0.01) probably_damaging(1) TCGA-55-7576-01 20 37214727 37214727 C A ADIG Silent p.G60G 0.28 TCGA-55-7576-01 20 39726903 39726903 G C TOP1 Missense_Mutation p.D301H 0.29 deleterious(0) probably_damaging(0.989) TCGA-55-7576-01 20 44470570 44470570 C T ACOT8 Silent p.G289G 0.23 TCGA-55-7576-01 20 44673636 44673636 G T SLC12A5 Missense_Mutation p.V499L 0.20 tolerated(0.1) benign(0.02) TCGA-55-7576-01 20 49202373 49202373 G C FAM65C 3'Flank 0.09 TCGA-55-7576-01 20 56735869 56735869 C A C20orf85 Silent p.G135G 0.38 TCGA-55-7576-01 20 58571591 58571591 A T CDH26 Intron 0.12 TCGA-55-7576-01 20 62078122 62078122 G T KCNQ2 Nonsense_Mutation p.S122* 0.23 TCGA-55-7576-01 20 62126415 62126415 C A EEF1A2 Nonsense_Mutation p.E122* 0.13 TCGA-55-7576-01 21 11038940 11038940 G T BAGE2 RNA 0.04 TCGA-55-7576-01 21 14982875 14982875 G A POTED Missense_Mutation p.C109Y 0.21 tolerated_low_confidence(0.06) possibly_damaging(0.52) TCGA-55-7576-01 21 32127668 32127668 C A KRTAP21-1 Missense_Mutation p.C10F 0.43 deleterious_low_confidence(0) unknown(0) TCGA-55-7576-01 21 32624242 32624242 G A TIAM1 Silent p.S409S 0.10 TCGA-55-7576-01 21 46323351 46323351 A G ITGB2 Missense_Mutation p.L143P 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-55-7576-01 22 31534710 31534710 T A PLA2G3 Missense_Mutation p.N197I 0.53 deleterious(0) probably_damaging(0.913) TCGA-55-7576-01 22 42266914 42266914 A T SREBF2 Missense_Mutation p.I248F 0.07 deleterious(0.02) possibly_damaging(0.71) TCGA-55-7576-01 2 100906881 100906881 G C LONRF2 Missense_Mutation p.L587V 0.33 deleterious(0.01) benign(0.021) TCGA-55-7576-01 2 107040515 107040515 G C RGPD3 Missense_Mutation p.S1303C 0.32 deleterious(0) probably_damaging(0.991) TCGA-55-7576-01 2 107459800 107459800 C T ST6GAL2 Missense_Mutation p.V212I 0.25 benign(0.07) TCGA-55-7576-01 2 110325451 110325451 G A SEPT10 Nonsense_Mutation p.Q235* 0.15 TCGA-55-7576-01 2 1168816 1168816 T C SNTG2 Missense_Mutation p.S180P 0.17 deleterious(0.01) probably_damaging(0.914) TCGA-55-7576-01 2 125547612 125547612 C G CNTNAP5 Missense_Mutation p.S961R 0.35 deleterious(0.01) possibly_damaging(0.846) TCGA-55-7576-01 2 135893295 135893295 A T RAB3GAP1 Silent p.G572G 0.33 TCGA-55-7576-01 2 136536537 136536537 G T UBXN4 Missense_Mutation p.G358V 0.14 deleterious(0) probably_damaging(0.964) TCGA-55-7576-01 2 141242913 141242913 C A LRP1B Nonsense_Mutation p.G3142* 0.24 TCGA-55-7576-01 2 153473647 153473647 A C FMNL2 Missense_Mutation p.K419Q 0.19 possibly_damaging(0.774) TCGA-55-7576-01 2 155157978 155157978 T A GALNT13 Silent p.V344V 0.05 TCGA-55-7576-01 2 158115649 158115649 G T GALNT5 Missense_Mutation p.G352V 0.21 deleterious_low_confidence(0.03) benign(0.319) TCGA-55-7576-01 2 160964351 160964351 G A ITGB6 Missense_Mutation p.P703S 0.15 tolerated(0.11) benign(0.184) TCGA-55-7576-01 2 160964353 160964353 C A ITGB6 Missense_Mutation p.C702F 0.15 deleterious(0) possibly_damaging(0.891) TCGA-55-7576-01 2 171262116 171262116 C A MYO3B Nonsense_Mutation p.C831* 0.18 TCGA-55-7576-01 2 179428882 179428882 T G TTN Missense_Mutation p.K27326T 0.11 TCGA-55-7576-01 2 179547582 179547582 T G TTN Missense_Mutation p.E10979A 0.29 TCGA-55-7576-01 2 179659191 179659191 C T TTN Missense_Mutation p.A445T 0.05 TCGA-55-7576-01 2 179701812 179701812 G T CCDC141 Silent p.T1378T 0.18 TCGA-55-7576-01 2 18112790 18112790 G T KCNS3 Missense_Mutation p.W172L 0.10 deleterious(0) possibly_damaging(0.637) TCGA-55-7576-01 2 185802849 185802849 A T ZNF804A Missense_Mutation p.D909V 0.12 deleterious(0.02) benign(0.207) TCGA-55-7576-01 2 1890352 1890352 T G MYT1L Missense_Mutation p.K888N 0.12 deleterious(0) possibly_damaging(0.877) TCGA-55-7576-01 2 192250719 192250719 A G MYO1B Missense_Mutation p.H488R 0.17 deleterious(0.04) possibly_damaging(0.811) TCGA-55-7576-01 2 198950576 198950576 G T PLCL1 Missense_Mutation p.D779Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-55-7576-01 2 207171954 207171954 A C ZDBF2 Missense_Mutation p.Q901P 0.12 tolerated(0.13) possibly_damaging(0.48) TCGA-55-7576-01 2 207174447 207174447 T G ZDBF2 Missense_Mutation p.L1732R 0.08 tolerated(0.07) possibly_damaging(0.766) TCGA-55-7576-01 2 208442226 208442226 C T CREB1 Intron 0.14 TCGA-55-7576-01 2 219128429 219128429 G A GPBAR1 Missense_Mutation p.D328N 0.07 tolerated_low_confidence(0.1) benign(0.003) TCGA-55-7576-01 2 220285636 220285636 C G DES Missense_Mutation p.I328M 0.40 deleterious(0.05) possibly_damaging(0.835) TCGA-55-7576-01 2 223917638 223917638 C A KCNE4 Missense_Mutation p.S30R 0.33 tolerated(0.39) benign(0.371) TCGA-55-7576-01 2 230911413 230911413 C A SLC16A14 Silent p.L143L 0.11 TCGA-55-7576-01 2 234627778 234627778 A G UGT1A4 Silent p.E104E 0.46 TCGA-55-7576-01 2 238245021 238245021 C T COL6A3 Missense_Mutation p.A2908T 0.05 unknown(0) TCGA-55-7576-01 2 240985297 240985297 A T OR6B3 Missense_Mutation p.S65T 0.22 tolerated(0.09) benign(0.006) TCGA-55-7576-01 2 27278943 27278943 T C AGBL5 Silent p.H434H 0.11 TCGA-55-7576-01 2 27375636 27375636 C A TCF23 Missense_Mutation p.S182R 0.33 deleterious(0.01) benign(0.101) TCGA-55-7576-01 2 27880518 27880518 C G SUPT7L Silent p.V146V 0.16 TCGA-55-7576-01 2 33747028 33747028 C T RASGRP3 Silent p.S125S 0.21 TCGA-55-7576-01 2 40655749 40655749 C A SLC8A1 Missense_Mutation p.V558L 0.09 tolerated(0.4) benign(0.011) TCGA-55-7576-01 2 50699530 50699530 T A NRXN1 Missense_Mutation p.Q1090H 0.14 deleterious(0) probably_damaging(0.988) TCGA-55-7576-01 2 73677809 73677809 A G ALMS1 Silent p.T1384T 0.34 TCGA-55-7576-01 2 74274191 74274191 C G TET3 Missense_Mutation p.P248A 0.37 tolerated(0.11) benign(0.028) TCGA-55-7576-01 2 77745595 77745595 C A LRRTM4 Missense_Mutation p.R467L 0.33 deleterious(0) possibly_damaging(0.785) TCGA-55-7576-01 2 79385590 79385590 C T REG3A Splice_Site p.X66_splice 0.10 TCGA-55-7576-01 2 98409004 98409004 G A TMEM131 Missense_Mutation p.S1330F 0.12 deleterious_low_confidence(0.03) benign(0.006) TCGA-55-7576-01 3 112357658 112357658 C T CCDC80 Silent p.T365T 0.14 TCGA-55-7576-01 3 118865169 118865169 A C C3orf30 Missense_Mutation p.N45H 0.07 deleterious(0.03) probably_damaging(0.991) TCGA-55-7576-01 3 119373406 119373406 G T POPDC2 Missense_Mutation p.F182L 0.28 deleterious(0) probably_damaging(0.973) TCGA-55-7576-01 3 131388605 131388605 C - CPNE4 Frame_Shift_Del p.V199* 0.10 TCGA-55-7576-01 3 142430746 142430746 C G PLS1 Missense_Mutation p.A596G 0.32 deleterious(0.01) probably_damaging(0.995) TCGA-55-7576-01 3 150645608 150645608 C T CLRN1 3'Flank 0.32 TCGA-55-7576-01 3 179527326 179527326 A G PEX5L Missense_Mutation p.Y429H 0.06 tolerated(1) benign(0.002) TCGA-55-7576-01 3 183703197 183703197 T A ABCC5 Intron 0.46 TCGA-55-7576-01 3 185390392 185390392 G A IGF2BP2 Silent p.S379S 0.46 TCGA-55-7576-01 3 197505313 197505313 A C FYTTD1 Missense_Mutation p.D279A 0.12 deleterious(0) possibly_damaging(0.832) TCGA-55-7576-01 3 38991770 38991770 C A SCN11A Missense_Mutation p.E28D 0.05 deleterious(0.02) benign(0.26) TCGA-55-7576-01 3 39227571 39227571 C T XIRP1 Silent p.R1122R 0.07 TCGA-55-7576-01 3 47042821 47042821 G A NBEAL2 Missense_Mutation p.V1513M 0.40 tolerated(0.24) benign(0.003) TCGA-55-7576-01 3 47957762 47957762 C A MAP4 Missense_Mutation p.D519Y 0.14 deleterious(0) probably_damaging(0.91) TCGA-55-7576-01 3 52800267 52800267 A G NEK4 Missense_Mutation p.M162T 0.44 deleterious(0) probably_damaging(0.997) TCGA-55-7576-01 3 8672548 8672548 A C SSUH2 Silent p.P156P 0.44 TCGA-55-7576-01 4 105412377 105412377 T G CXXC4 Missense_Mutation p.T195P 0.04 tolerated(0.1) benign(0.332) TCGA-55-7576-01 4 10542120 10542120 G C CLNK Silent p.P200P 0.14 TCGA-55-7576-01 4 10542121 10542121 G T CLNK Missense_Mutation p.P200H 0.14 deleterious(0.01) possibly_damaging(0.847) TCGA-55-7576-01 4 115760534 115760534 C T NDST4 Silent p.Q762Q 0.17 TCGA-55-7576-01 4 123900432 123900432 C A SPATA5 Missense_Mutation p.P587H 0.30 tolerated(0.05) possibly_damaging(0.469) TCGA-55-7576-01 4 126329632 126329632 A T FAT4 Missense_Mutation p.D1868V 0.08 possibly_damaging(0.67) TCGA-55-7576-01 4 13378210 13378210 G A RAB28 Missense_Mutation p.L178F 0.20 deleterious(0.05) probably_damaging(0.935) TCGA-55-7576-01 4 134072556 134072556 C A PCDH10 Missense_Mutation p.L421M 0.17 deleterious(0) probably_damaging(1) TCGA-55-7576-01 4 156850800 156850800 T C CTSO Missense_Mutation p.I244M 0.10 deleterious(0.02) possibly_damaging(0.824) TCGA-55-7576-01 4 16000077 16000077 C A PROM1 Missense_Mutation p.W538L 0.19 tolerated(0.07) possibly_damaging(0.838) TCGA-55-7576-01 4 164271568 164271568 A G NPY5R Missense_Mutation p.Y48C 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-7576-01 4 186544784 186544784 G C SORBS2 Missense_Mutation p.S696C 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-7576-01 4 2702235 2702237 AAG - FAM193A In_Frame_Del p.K1158del 0.15 TCGA-55-7576-01 4 3429912 3429912 G T RGS12 Intron 0.42 TCGA-55-7576-01 4 3429913 3429913 G T RGS12 Intron 0.41 TCGA-55-7576-01 4 40245386 40245386 G T RHOH Missense_Mutation p.R127M 0.31 deleterious(0.03) possibly_damaging(0.823) TCGA-55-7576-01 4 62598771 62598771 G T LPHN3 Missense_Mutation p.D232Y 0.14 deleterious(0) probably_damaging(1) TCGA-55-7576-01 4 8621184 8621184 C A CPZ Missense_Mutation p.P600H 0.40 deleterious(0.01) benign(0.002) TCGA-55-7576-01 4 8621185 8621185 C A CPZ Silent p.P600P 0.40 TCGA-55-7576-01 5 1037950 1037950 C T NKD2 Missense_Mutation p.P273L 0.13 tolerated(0.72) benign(0.311) TCGA-55-7576-01 5 1089150 1089150 C A SLC12A7 Missense_Mutation p.G146W 0.23 deleterious(0) probably_damaging(0.999) TCGA-55-7576-01 5 115782666 115782666 G A SEMA6A Silent p.Y912Y 0.37 TCGA-55-7576-01 5 122893250 122893250 G T CSNK1G3 Missense_Mutation p.G94V 0.67 tolerated(0.14) probably_damaging(0.946) TCGA-55-7576-01 5 132216693 132216693 C A AFF4 3'UTR 0.09 TCGA-55-7576-01 5 133477984 133477984 C G TCF7 Missense_Mutation p.F248L 0.09 tolerated(0.56) benign(0.006) TCGA-55-7576-01 5 137501759 137501759 C A BRD8 Missense_Mutation p.G346W 0.35 deleterious(0.01) possibly_damaging(0.765) TCGA-55-7576-01 5 137501760 137501760 C A BRD8 Silent p.V345V 0.35 TCGA-55-7576-01 5 137681066 137681066 G T FAM53C Missense_Mutation p.R230L 0.43 deleterious(0) possibly_damaging(0.858) TCGA-55-7576-01 5 138716250 138716250 C A SLC23A1 Missense_Mutation p.G157C 0.21 tolerated_low_confidence(0.14) possibly_damaging(0.896) TCGA-55-7576-01 5 140481673 140481673 A T PCDHB3 Silent p.S480S 0.21 TCGA-55-7576-01 5 140553848 140553848 A T PCDHB7 Nonsense_Mutation p.R478* 0.30 TCGA-55-7576-01 5 140559961 140559961 A T PCDHB8 Silent p.P782P 0.49 TCGA-55-7576-01 5 140572515 140572515 G T PCDHB10 Silent p.A130A 0.45 TCGA-55-7576-01 5 140573763 140573763 G T PCDHB10 Silent p.L546L 0.40 TCGA-55-7576-01 5 153078536 153078536 A G GRIA1 Missense_Mutation p.Y462C 0.37 tolerated(0.05) probably_damaging(0.928) TCGA-55-7576-01 5 153182019 153182019 A G GRIA1 Missense_Mutation p.Y840C 0.51 deleterious(0.03) probably_damaging(0.999) TCGA-55-7576-01 5 153789304 153789304 G T GALNT10 Silent p.P456P 0.41 TCGA-55-7576-01 5 154395457 154395457 C T KIF4B Missense_Mutation p.R680C 0.44 deleterious(0) probably_damaging(0.987) TCGA-55-7576-01 5 169015423 169015423 G T SPDL1 Translation_Start_Site p.M1? 0.19 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-55-7576-01 5 180419848 180419848 C A BTNL3 Missense_Mutation p.Q29K 0.38 tolerated(1) benign(0.064) TCGA-55-7576-01 5 23509091 23509091 G T PRDM9 5'UTR 0.14 TCGA-55-7576-01 5 72980702 72980702 C T ARHGEF28 Missense_Mutation p.P9L 0.11 deleterious(0) possibly_damaging(0.536) TCGA-55-7576-01 5 7820692 7820692 C A ADCY2 Missense_Mutation p.P1005T 0.10 deleterious(0) probably_damaging(0.999) TCGA-55-7576-01 5 7820694 7820694 T A ADCY2 Silent p.P1005P 0.10 TCGA-55-7576-01 5 82786069 82786069 G A VCAN Missense_Mutation p.G75R 0.06 deleterious(0) probably_damaging(0.979) TCGA-55-7576-01 5 96364313 96364313 C T LNPEP 3'UTR 0.16 TCGA-55-7576-01 6 12125963 12125963 G T HIVEP1 Missense_Mutation p.G1979C 0.51 deleterious(0) probably_damaging(0.972) TCGA-55-7576-01 6 136599608 136599608 C T BCLAF1 Silent p.R137R 0.15 TCGA-55-7576-01 6 159652923 159652923 C G FNDC1 Missense_Mutation p.A460G 0.16 tolerated(0.2) unknown(0) TCGA-55-7576-01 6 168281113 168281113 A T MLLT4 Silent p.T271T 0.23 TCGA-55-7576-01 6 169622404 169622404 G T THBS2 Missense_Mutation p.P1054H 0.55 deleterious(0) probably_damaging(0.996) TCGA-55-7576-01 6 21000533 21000533 G T CDKAL1 Missense_Mutation p.V329L 0.37 deleterious(0) probably_damaging(0.92) TCGA-55-7576-01 6 3410511 3410511 G A SLC22A23 Missense_Mutation p.A275V 0.33 deleterious(0.01) probably_damaging(0.988) TCGA-55-7576-01 6 3410527 3410527 A G SLC22A23 Missense_Mutation p.F270L 0.29 tolerated(0.45) possibly_damaging(0.77) TCGA-55-7576-01 6 55922555 55922555 C A COL21A1 Missense_Mutation p.G925V 0.41 deleterious(0) unknown(0) TCGA-55-7576-01 6 55922556 55922556 C A COL21A1 Nonsense_Mutation p.G925* 0.40 TCGA-55-7576-01 6 56469916 56469916 G T DST Intron 0.39 TCGA-55-7576-01 6 57246828 57246828 G T PRIM2 Splice_Site p.X186_splice 0.10 TCGA-55-7576-01 6 57398165 57398165 C T PRIM2 Nonsense_Mutation p.Q290* 0.11 TCGA-55-7576-01 6 656832 656832 C A HUS1B Missense_Mutation p.S38I 0.27 deleterious(0.01) benign(0.214) TCGA-55-7576-01 6 80717571 80717571 C T TTK Missense_Mutation p.P62L 0.23 deleterious(0) probably_damaging(0.994) TCGA-55-7576-01 6 87725316 87725316 G T HTR1E Missense_Mutation p.W88C 0.17 deleterious(0) probably_damaging(1) TCGA-55-7576-01 6 87968813 87968813 A G ZNF292 Silent p.K1822K 0.59 TCGA-55-7576-01 6 97533105 97533105 C A KLHL32 Missense_Mutation p.S172Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-7576-01 6 97562130 97562130 A G KLHL32 Missense_Mutation p.T367A 0.45 deleterious(0.01) probably_damaging(0.963) TCGA-55-7576-01 7 100686347 100686347 A G MUC17 Missense_Mutation p.T3884A 0.08 benign(0.004) TCGA-55-7576-01 7 106545880 106545880 T C PIK3CG 3'UTR 0.13 TCGA-55-7576-01 7 107431532 107431532 C A SLC26A3 Silent p.A177A 0.42 TCGA-55-7576-01 7 117450854 117450854 C A CTTNBP2 Missense_Mutation p.A127S 0.19 tolerated(0.18) possibly_damaging(0.65) TCGA-55-7576-01 7 120876791 120876791 A T CPED1 Silent p.P693P 0.14 TCGA-55-7576-01 7 127235724 127235724 G A FSCN3 Missense_Mutation p.A170T 0.11 tolerated(0.35) benign(0.025) TCGA-55-7576-01 7 129906730 129906730 G A CPA2 Missense_Mutation p.M3I 0.19 deleterious(0.04) possibly_damaging(0.652) TCGA-55-7576-01 7 131913175 131913175 G A PLXNA4 Missense_Mutation p.S553L 0.10 deleterious(0.04) possibly_damaging(0.636) TCGA-55-7576-01 7 136699780 136699780 C G CHRM2 Silent p.T56T 0.18 TCGA-55-7576-01 7 141802436 141802436 A T MGAM Missense_Mutation p.Y1761F 0.15 tolerated(0.2) benign(0.002) TCGA-55-7576-01 7 142139303 142139303 T G TRBV7-6 Missense_Mutation p.M108L 0.11 tolerated(0.16) benign(0.001) TCGA-55-7576-01 7 142176420 142176420 C T TRBV7-4 Missense_Mutation p.A86T 0.09 deleterious(0.04) possibly_damaging(0.906) TCGA-55-7576-01 7 142180772 142180772 G C TRBV6-5 Missense_Mutation p.F29L 0.18 deleterious(0.03) possibly_damaging(0.794) TCGA-55-7576-01 7 142250759 142250759 C T TRBV6-4 Silent p.T96T 0.07 TCGA-55-7576-01 7 142459841 142459841 C A PRSS1 Nonsense_Mutation p.C139* 0.20 TCGA-55-7576-01 7 142562250 142562250 C A EPHB6 Missense_Mutation p.T231N 0.18 deleterious(0) benign(0.063) TCGA-55-7576-01 7 142575012 142575012 C T TRPV6 Missense_Mutation p.A124T 0.40 deleterious(0.01) probably_damaging(0.942) TCGA-55-7576-01 7 142612512 142612512 T C TRPV5 Silent p.G417G 0.23 TCGA-55-7576-01 7 142649608 142649608 C A KEL Missense_Mutation p.E397D 0.15 tolerated(0.38) benign(0.104) TCGA-55-7576-01 7 142997328 142997328 C T CASP2 Missense_Mutation p.A303V 0.08 tolerated(0.11) benign(0.24) TCGA-55-7576-01 7 143657479 143657479 G T OR2F1 Missense_Mutation p.G139V 0.06 tolerated(0.29) benign(0.061) TCGA-55-7576-01 7 143771910 143771910 G T OR2A25 Missense_Mutation p.A200S 0.13 tolerated(0.08) benign(0.262) TCGA-55-7576-01 7 148288075 148288075 C A C7orf33 Missense_Mutation p.P20T 0.15 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-55-7576-01 7 150027807 150027807 A G ZBED6CL Missense_Mutation p.Y105C 0.12 tolerated(0.11) benign(0.086) TCGA-55-7576-01 7 19184873 19184873 G C FERD3L Missense_Mutation p.S38C 0.27 tolerated(0.1) benign(0.002) TCGA-55-7576-01 7 23731012 23731012 C G FAM221A Missense_Mutation p.S145C 0.26 tolerated(0.16) benign(0.067) TCGA-55-7576-01 7 24738636 24738636 C T DFNA5 3'UTR 0.16 TCGA-55-7576-01 7 31378046 31378046 C T NEUROD6 Silent p.L279L 0.08 TCGA-55-7576-01 7 42005160 42005160 C A GLI3 Missense_Mutation p.D1171Y 0.12 deleterious(0) probably_damaging(0.917) TCGA-55-7576-01 7 44179170 44179170 T A MYL7 Splice_Site p.X126_splice 0.15 TCGA-55-7576-01 7 47857769 47857769 T A C7orf69 Missense_Mutation p.M85K 0.09 tolerated_low_confidence(1) benign(0.001) TCGA-55-7576-01 7 47913531 47913531 G T PKD1L1 Missense_Mutation p.R1288S 0.09 tolerated(0.24) benign(0.289) TCGA-55-7576-01 7 47955083 47955083 C G PKD1L1 Missense_Mutation p.E392Q 0.15 tolerated_low_confidence(0.37) benign(0.003) TCGA-55-7576-01 7 48411901 48411901 C T ABCA13 Missense_Mutation p.T3647I 0.04 benign(0.029) TCGA-55-7576-01 7 50070791 50070791 C A ZPBP Silent p.L201L 0.20 TCGA-55-7576-01 7 50547497 50547497 G T DDC Missense_Mutation p.H337N 0.10 tolerated(0.22) benign(0.009) TCGA-55-7576-01 7 56022736 56022736 C T MRPS17 Silent p.F86F 0.12 TCGA-55-7576-01 7 57529061 57529061 T C ZNF716 Silent p.C298C 0.22 TCGA-55-7576-01 7 62751996 62751996 C G ZNF733P RNA 0.08 TCGA-55-7576-01 7 81598227 81598227 G T CACNA2D1 Missense_Mutation p.Q791K 0.09 tolerated(0.44) benign(0.02) TCGA-55-7576-01 7 82451886 82451886 G C PCLO Missense_Mutation p.Q4906E 0.12 unknown(0) TCGA-55-7576-01 7 82585212 82585212 T C PCLO Missense_Mutation p.Q1686R 0.26 unknown(0) TCGA-55-7576-01 7 92987717 92987717 C A CCDC132 Missense_Mutation p.A955D 0.17 deleterious(0.02) benign(0.2) TCGA-55-7576-01 7 93516022 93516022 G A TFPI2 3'UTR 0.17 TCGA-55-7576-01 7 99264642 99264642 T A CYP3A5 Missense_Mutation p.E122V 0.09 deleterious(0.03) benign(0.032) TCGA-55-7576-01 7 99366022 99366022 T C CYP3A4 Missense_Mutation p.K209E 0.12 deleterious(0.03) possibly_damaging(0.547) TCGA-55-7576-01 8 100026089 100026089 G A VPS13B Missense_Mutation p.D25N 0.18 deleterious(0) possibly_damaging(0.822) TCGA-55-7576-01 8 100523444 100523444 G C VPS13B Missense_Mutation p.R1471P 0.21 deleterious(0.01) probably_damaging(0.979) TCGA-55-7576-01 8 10468379 10468379 C A RP1L1 Missense_Mutation p.G1077C 0.32 probably_damaging(0.91) TCGA-55-7576-01 8 10470122 10470122 C G RP1L1 Missense_Mutation p.G496R 0.27 probably_damaging(0.916) TCGA-55-7576-01 8 114326875 114326875 G C CSMD3 Nonsense_Mutation p.S109* 0.17 TCGA-55-7576-01 8 139190849 139190849 G T FAM135B Missense_Mutation p.Q320K 0.14 deleterious(0.03) benign(0.377) TCGA-55-7576-01 8 139737644 139737644 G T COL22A1 Missense_Mutation p.P727T 0.36 unknown(0) TCGA-55-7576-01 8 144662698 144662698 G C EEF1D Missense_Mutation p.S563C 0.30 deleterious(0) probably_damaging(0.936) TCGA-55-7576-01 8 18080399 18080399 C A NAT1 Silent p.P343P 0.23 TCGA-55-7576-01 8 2830736 2830736 G C CSMD1 Silent p.L2942L 0.26 TCGA-55-7576-01 8 37633465 37633465 T C PROSC Silent p.C209C 0.04 TCGA-55-7576-01 8 52366085 52366085 C A PXDNL Missense_Mutation p.V415L 0.18 deleterious(0.04) possibly_damaging(0.722) TCGA-55-7576-01 8 73850139 73850139 G A KCNB2 Missense_Mutation p.S850N 0.25 tolerated_low_confidence(0.56) benign(0.03) TCGA-55-7576-01 8 77763201 77763201 G A ZFHX4 Silent p.Q1348Q 0.24 TCGA-55-7576-01 8 77775594 77775595 - C ZFHX4 Frame_Shift_Ins p.K3217Qfs*19 0.14 TCGA-55-7576-01 9 108510377 108510377 G T TMEM38B Missense_Mutation p.G189V 0.33 deleterious(0) probably_damaging(1) TCGA-55-7576-01 9 111625106 111625106 G T ACTL7A Missense_Mutation p.L168F 0.23 deleterious(0.02) probably_damaging(1) TCGA-55-7576-01 9 111798569 111798569 T A TMEM245 Missense_Mutation p.L772F 0.14 deleterious(0.01) possibly_damaging(0.601) TCGA-55-7576-01 9 115421717 115421717 A T KIAA1958 Missense_Mutation p.T507S 0.11 tolerated(0.52) benign(0.001) TCGA-55-7576-01 9 116811305 116811305 C A ZNF618 Missense_Mutation p.H482N 0.28 tolerated(0.15) benign(0.098) TCGA-55-7576-01 9 119976997 119976997 G T ASTN2 Missense_Mutation p.L219M 0.12 tolerated_low_confidence(0.09) unknown(0) TCGA-55-7576-01 9 120474958 120474958 C A TLR4 Missense_Mutation p.S184R 0.23 tolerated(0.2) benign(0.164) TCGA-55-7576-01 9 124936822 124936822 G T MORN5 Missense_Mutation p.G119C 0.09 deleterious(0.01) possibly_damaging(0.528) TCGA-55-7576-01 9 125281709 125281709 G T OR1J4 Missense_Mutation p.C97F 0.31 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-55-7576-01 9 125582562 125582562 C T PDCL Silent p.L236L 0.26 TCGA-55-7576-01 9 126133381 126133381 G T CRB2 Missense_Mutation p.A654S 0.32 tolerated(0.98) possibly_damaging(0.515) TCGA-55-7576-01 9 131008720 131008720 G T DNM1 Silent p.R573R 0.26 TCGA-55-7576-01 9 131023512 131023512 T A GOLGA2 Missense_Mutation p.E426D 0.10 tolerated(0.34) benign(0.044) TCGA-55-7576-01 9 132571214 132571214 G T TOR1B Silent p.T224T 0.35 TCGA-55-7576-01 9 133759423 133759423 C A ABL1 Silent p.G601G 0.26 TCGA-55-7576-01 9 133759424 133759424 G A ABL1 Missense_Mutation p.G602S 0.26 tolerated_low_confidence(1) benign(0.002) TCGA-55-7576-01 9 135116431 135116431 C A NTNG2 Missense_Mutation p.P453T 0.17 tolerated(0.11) possibly_damaging(0.756) TCGA-55-7576-01 9 138011928 138011928 C T OLFM1 Silent p.Y436Y 0.16 TCGA-55-7576-01 9 140729340 140729340 G T EHMT1 Missense_Mutation p.A1278S 0.36 tolerated(0.25) benign(0.006) TCGA-55-7576-01 9 4573997 4573997 G T SLC1A1 Missense_Mutation p.M286I 0.33 deleterious(0.01) benign(0.075) TCGA-55-7576-01 9 5054660 5054660 C A JAK2 Missense_Mutation p.Q238K 0.13 tolerated(0.86) benign(0.101) TCGA-55-7576-01 9 5054741 5054741 T G JAK2 Missense_Mutation p.F265V 0.21 tolerated(0.29) benign(0.01) TCGA-55-7576-01 9 5054743 5054743 C G JAK2 Missense_Mutation p.F265L 0.22 tolerated(0.82) benign(0.003) TCGA-55-7576-01 9 73461370 73461370 C A TRPM3 Missense_Mutation p.K200N 0.24 deleterious(0.03) benign(0.392) TCGA-55-7576-01 9 74312911 74312911 C G TMEM2 Missense_Mutation p.G1196A 0.33 deleterious(0) probably_damaging(1) TCGA-55-7576-01 9 74863320 74863320 C T GDA Intron 0.28 TCGA-55-7576-01 9 79318455 79318455 A T PRUNE2 Missense_Mutation p.S2692T 0.14 tolerated(0.22) benign(0.035) TCGA-55-7576-01 9 79318981 79318981 T C PRUNE2 Silent p.E2516E 0.32 TCGA-55-7576-01 9 80858483 80858483 A T CEP78 Missense_Mutation p.N237Y 0.18 deleterious(0) probably_damaging(0.998) TCGA-55-7576-01 9 93657900 93657900 G T SYK 3'UTR 0.28 TCGA-55-7576-01 9 98279117 98279117 G T RP11-435O5.4 3'Flank 0.16 TCGA-55-7576-01 X 107939545 107939545 G T COL4A5 Silent p.T1671T 0.47 TCGA-55-7576-01 X 134186150 134186150 C T FAM127B 5'UTR 0.40 TCGA-55-7576-01 X 135047011 135047011 C A MMGT1 3'UTR 0.45 TCGA-55-7576-01 X 14625333 14625333 C A GLRA2 Missense_Mutation p.Q220K 0.50 tolerated(0.09) probably_damaging(0.999) TCGA-55-7576-01 X 151366116 151366116 C A GABRA3 Missense_Mutation p.R307L 0.65 deleterious(0) probably_damaging(0.994) TCGA-55-7576-01 X 153225260 153225260 C G HCFC1 Missense_Mutation p.R479S 0.57 tolerated(0.15) probably_damaging(0.972) TCGA-55-7576-01 X 48762204 48762204 C A SLC35A2 Missense_Mutation p.A328S 0.15 tolerated(0.05) possibly_damaging(0.5) TCGA-55-7576-01 X 49777916 49777916 G T CLCN5 Intron 0.14 TCGA-55-7576-01 X 5821840 5821840 C A NLGN4X Silent p.P293P 0.26 TCGA-55-7576-01 X 67433734 67433734 C A OPHN1 Missense_Mutation p.Q189H 0.36 deleterious(0.03) probably_damaging(0.998) TCGA-55-7576-01 X 84362581 84362581 C A SATL1 Missense_Mutation p.S465I 0.23 tolerated(0.42) benign(0.264) TCGA-55-7724-01 10 105349997 105349997 G A NEURL1 Silent p.T531T 0.10 TCGA-55-7724-01 10 117001358 117001358 A G ATRNL1 Splice_Site p.X511_splice 0.08 TCGA-55-7724-01 10 118699991 118699991 G A KIAA1598 Nonsense_Mutation p.Q282* 0.06 TCGA-55-7724-01 10 123661995 123661995 A G ATE1 Missense_Mutation p.F242L 0.13 tolerated(1) benign(0) TCGA-55-7724-01 10 128114584 128114584 T A C10orf90 Missense_Mutation p.R679S 0.14 deleterious(0) probably_damaging(0.964) TCGA-55-7724-01 10 436259 436259 G A DIP2C Missense_Mutation p.P480L 0.12 deleterious(0) possibly_damaging(0.764) TCGA-55-7724-01 10 49450294 49450294 C T FRMPD2 Silent p.R159R 0.08 TCGA-55-7724-01 10 6066301 6066301 C T IL2RA Silent p.T91T 0.14 TCGA-55-7724-01 10 71158451 71158451 G C HK1 Missense_Mutation p.V830L 0.15 deleterious(0.02) benign(0.427) TCGA-55-7724-01 10 71873908 71873908 G A AIFM2 3'UTR 0.08 TCGA-55-7724-01 10 75565474 75565474 T C NDST2 Silent p.L539L 0.08 TCGA-55-7724-01 10 82112230 82112230 T A DYDC1 Missense_Mutation p.N43I 0.18 tolerated(0.44) benign(0.167) TCGA-55-7724-01 10 93586895 93586895 T C TNKS2 Missense_Mutation p.L306P 0.04 tolerated(0.27) probably_damaging(0.998) TCGA-55-7724-01 10 93695417 93695417 A G BTAF1 Silent p.L6L 0.19 TCGA-55-7724-01 11 1026473 1026473 G A MUC6 Silent p.P800P 0.11 TCGA-55-7724-01 11 114453682 114453682 A G NXPE4 Missense_Mutation p.L53S 0.09 tolerated(0.91) benign(0.002) TCGA-55-7724-01 11 13427223 13427223 C A BTBD10 Missense_Mutation p.G330V 0.06 deleterious(0) probably_damaging(0.985) TCGA-55-7724-01 11 30433117 30433117 G A MPPED2 Silent p.T261T 0.08 TCGA-55-7724-01 11 55658790 55658790 G - TRIM51 Frame_Shift_Del p.D349Tfs*23 0.13 TCGA-55-7724-01 11 55798491 55798491 C G OR5AS1 Silent p.L199L 0.07 TCGA-55-7724-01 11 57156708 57156708 C A PRG2 Missense_Mutation p.E47D 0.07 tolerated(0.26) benign(0.005) TCGA-55-7724-01 11 57958327 57958327 G A OR9Q2 Missense_Mutation p.R122H 0.07 deleterious(0.02) probably_damaging(0.97) TCGA-55-7724-01 11 6007675 6007675 G A OR52L1 Silent p.I162I 0.07 TCGA-55-7724-01 11 60215196 60215196 C T MS4A5 Silent p.C189C 0.04 TCGA-55-7724-01 11 60269468 60269468 G T MS4A12 Missense_Mutation p.G143C 0.10 deleterious(0) probably_damaging(1) TCGA-55-7724-01 11 66807372 66807372 A G SYT12 Missense_Mutation p.I107V 0.07 deleterious_low_confidence(0.05) benign(0.001) TCGA-55-7724-01 11 71715288 71715288 G A NUMA1 Missense_Mutation p.P2036S 0.07 benign(0.026) TCGA-55-7724-01 11 73669405 73669405 G A DNAJB13 Missense_Mutation p.E38K 0.08 tolerated(0.19) benign(0.008) TCGA-55-7724-01 11 82868592 82868592 C T PCF11 Silent p.I37I 0.04 TCGA-55-7724-01 12 100478282 100478282 T C UHRF1BP1L Silent p.T420T 0.10 TCGA-55-7724-01 12 11214561 11214561 G T TAS2R46 Silent p.A111A 0.14 TCGA-55-7724-01 12 123338594 123338594 C G HIP1R Missense_Mutation p.F194L 0.08 tolerated(0.12) benign(0.02) TCGA-55-7724-01 12 125834688 125834688 G T TMEM132B Missense_Mutation p.S248I 0.16 deleterious(0.02) benign(0.286) TCGA-55-7724-01 12 131616301 131616301 G C GPR133 Missense_Mutation p.R736T 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-55-7724-01 12 40688716 40688716 A T LRRK2 Missense_Mutation p.R960W 0.05 tolerated(0.06) benign(0) TCGA-55-7724-01 12 48543756 48543756 C T ASB8 Missense_Mutation p.R87Q 0.10 deleterious(0.01) benign(0.306) TCGA-55-7724-01 12 49312207 49312207 G A CCDC65 Silent p.K253K 0.08 TCGA-55-7724-01 12 52946759 52946759 C T KRT71 Missense_Mutation p.G35R 0.07 tolerated(0.07) benign(0.422) TCGA-55-7724-01 12 53684209 53684209 C T ESPL1 Nonsense_Mutation p.R1774* 0.10 TCGA-55-7724-01 12 62918926 62918926 A G MON2 Missense_Mutation p.N391S 0.11 tolerated(0.3) possibly_damaging(0.55) TCGA-55-7724-01 12 78513397 78513397 C A NAV3 Missense_Mutation p.P1141T 0.10 deleterious(0) probably_damaging(1) TCGA-55-7724-01 12 78513398 78513398 C A NAV3 Missense_Mutation p.P1141H 0.09 deleterious(0) probably_damaging(1) TCGA-55-7724-01 12 8212099 8212099 A G C3AR1 Missense_Mutation p.V228A 0.08 tolerated(0.71) benign(0) TCGA-55-7724-01 13 25281307 25281307 C T ATP12A Silent p.S778S 0.12 TCGA-55-7724-01 13 25479796 25479796 C A CENPJ Missense_Mutation p.D794Y 0.08 deleterious(0) probably_damaging(0.986) TCGA-55-7724-01 13 30077256 30077256 G C MTUS2 Silent p.P1351P 0.18 TCGA-55-7724-01 13 30077257 30077257 A T MTUS2 Missense_Mutation p.I1352F 0.18 deleterious(0.01) possibly_damaging(0.782) TCGA-55-7724-01 13 38266233 38266233 C T TRPC4 Silent p.L379L 0.09 TCGA-55-7724-01 13 72049967 72049967 T C DACH1 Missense_Mutation p.R631G 0.08 probably_damaging(0.999) TCGA-55-7724-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.11 deleterious(0) probably_damaging(0.999) TCGA-55-7724-01 14 105911820 105911820 C T MTA1 Silent p.T54T 0.09 TCGA-55-7724-01 14 106667876 106667876 C T IGHV3-20 Missense_Mutation p.C19Y 0.25 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-55-7724-01 14 107049112 107049112 A T IGHV3-53 Missense_Mutation p.F3L 0.13 tolerated_low_confidence(0.61) benign(0.003) TCGA-55-7724-01 14 107078537 107078537 G A IGHV1-58 Missense_Mutation p.R63C 0.10 possibly_damaging(0.566) TCGA-55-7724-01 14 20528818 20528818 G C OR4L1 Silent p.L205L 0.06 TCGA-55-7724-01 14 20766966 20766966 T C TTC5 Missense_Mutation p.Y210C 0.11 deleterious(0) probably_damaging(1) TCGA-55-7724-01 14 23282224 23282224 C A SLC7A7 Missense_Mutation p.E128D 0.06 deleterious(0.05) probably_damaging(0.976) TCGA-55-7724-01 14 24886453 24886453 T G NYNRIN Missense_Mutation p.L1833R 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-7724-01 14 38724577 38724577 C A CLEC14A Silent p.R217R 0.12 TCGA-55-7724-01 14 47343340 47343340 T C MDGA2 Missense_Mutation p.N834S 0.12 tolerated(0.28) benign(0.083) TCGA-55-7724-01 14 64935446 64935446 G A AKAP5 Missense_Mutation p.E112K 0.06 tolerated(0.12) benign(0.028) TCGA-55-7724-01 14 71209239 71209239 G A MAP3K9 Missense_Mutation p.R466W 0.11 deleterious(0) possibly_damaging(0.885) TCGA-55-7724-01 14 88416221 88416221 T A GALC Nonsense_Mutation p.R436* 0.07 TCGA-55-7724-01 14 88729741 88729741 C A KCNK10 Missense_Mutation p.Q69H 0.05 tolerated(0.66) benign(0.001) TCGA-55-7724-01 15 102358549 102358549 C A OR4F15 Missense_Mutation p.H54N 0.44 tolerated_low_confidence(0.06) benign(0.002) TCGA-55-7724-01 15 22369371 22369371 T A OR4M2 Missense_Mutation p.S266T 0.07 tolerated(1) benign(0.009) TCGA-55-7724-01 15 22369372 22369372 C G OR4M2 Missense_Mutation p.S266W 0.07 deleterious(0.01) probably_damaging(0.917) TCGA-55-7724-01 15 49325180 49325180 C A SECISBP2L Missense_Mutation p.D216Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-55-7724-01 15 55474303 55474303 C A RSL24D1 3'UTR 0.33 TCGA-55-7724-01 15 64263687 64263687 T C DAPK2 Missense_Mutation p.I130V 0.07 tolerated(0.21) benign(0.132) TCGA-55-7724-01 15 72690674 72690674 C T TMEM202 Nonsense_Mutation p.R3* 0.14 TCGA-55-7724-01 15 77348493 77348493 C A TSPAN3 Silent p.V56V 0.24 TCGA-55-7724-01 15 99669782 99669782 C T SYNM Missense_Mutation p.S405L 0.04 tolerated(0.65) benign(0.014) TCGA-55-7724-01 16 1536429 1536429 G A PTX4 Silent p.Y311Y 0.10 TCGA-55-7724-01 16 24372717 24372717 G T CACNG3 Missense_Mutation p.A161S 0.05 tolerated(0.3) benign(0.208) TCGA-55-7724-01 16 24980012 24980012 C T ARHGAP17 Silent p.E118E 0.08 TCGA-55-7724-01 16 30990966 30990966 G C SETD1A Missense_Mutation p.E1287Q 0.25 unknown(0) TCGA-55-7724-01 16 48577000 48577000 G C N4BP1 Missense_Mutation p.L836V 0.13 tolerated(0.42) benign(0.018) TCGA-55-7724-01 16 68021890 68021890 T A DPEP2 Missense_Mutation p.K357N 0.04 deleterious(0.03) benign(0.008) TCGA-55-7724-01 16 712698 712698 G A WDR90 Missense_Mutation p.E1389K 0.11 deleterious(0.02) probably_damaging(0.981) TCGA-55-7724-01 16 71823312 71823312 C T AP1G1 Missense_Mutation p.R24Q 0.06 deleterious(0.02) probably_damaging(1) TCGA-55-7724-01 17 27016385 27016385 A G SUPT6H Missense_Mutation p.I1050V 0.05 tolerated(1) benign(0.014) TCGA-55-7724-01 17 41063209 41063209 C G G6PC Nonsense_Mutation p.Y280* 0.09 TCGA-55-7724-01 17 47117317 47117317 A C IGF2BP1 Splice_Site p.X228_splice 0.31 TCGA-55-7724-01 17 47799892 47799892 G A FAM117A Missense_Mutation p.A144V 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-55-7724-01 17 57057436 57057436 T A PPM1E Missense_Mutation p.Y438N 0.15 deleterious(0) probably_damaging(0.977) TCGA-55-7724-01 17 58577832 58577832 C T APPBP2 Missense_Mutation p.R52H 0.16 deleterious(0.02) possibly_damaging(0.613) TCGA-55-7724-01 17 7216947 7216947 G A GPS2 Nonsense_Mutation p.Q192* 0.11 TCGA-55-7724-01 17 72588302 72588302 C T CD300LD Missense_Mutation p.G14S 0.12 deleterious(0.01) benign(0.119) TCGA-55-7724-01 18 28710644 28710644 G C DSC1 Missense_Mutation p.H840D 0.04 deleterious(0.02) benign(0.272) TCGA-55-7724-01 18 31319655 31319655 A G ASXL3 Missense_Mutation p.R763G 0.07 benign(0.004) TCGA-55-7724-01 18 74968163 74968163 A C GALR1 Missense_Mutation p.E239A 0.11 deleterious(0.03) benign(0.105) TCGA-55-7724-01 19 15789145 15789145 G A CYP4F12 Nonsense_Mutation p.W91* 0.06 TCGA-55-7724-01 19 31040325 31040325 G A ZNF536 Missense_Mutation p.V1267I 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.907) TCGA-55-7724-01 19 35556931 35556931 A G HPN Missense_Mutation p.I404V 0.07 tolerated(0.13) benign(0.001) TCGA-55-7724-01 19 47422272 47422272 C T ARHGAP35 Nonsense_Mutation p.Q114* 0.12 TCGA-55-7724-01 19 51983917 51983917 G T CEACAM18 Missense_Mutation p.G189V 0.07 tolerated(0.05) probably_damaging(0.998) TCGA-55-7724-01 19 54238177 54238177 A T MIR518D RNA 0.08 TCGA-55-7724-01 19 58214004 58214004 G A ZNF154 Missense_Mutation p.L105F 0.08 tolerated(0.15) benign(0.043) TCGA-55-7724-01 1 103355008 103355008 C G COL11A1 Intron 0.10 TCGA-55-7724-01 1 108507399 108507399 G T VAV3 Missense_Mutation p.F31L 0.09 tolerated(0.06) probably_damaging(0.984) TCGA-55-7724-01 1 115266587 115266587 T A CSDE1 Missense_Mutation p.Y643F 0.10 tolerated(0.39) benign(0.283) TCGA-55-7724-01 1 117910750 117910750 C G MAN1A2 5'UTR 0.09 TCGA-55-7724-01 1 118570994 118570994 A T SPAG17 Silent p.P1211P 0.20 TCGA-55-7724-01 1 119965152 119965152 A G HSD3B2 Missense_Mutation p.Y343C 0.07 deleterious(0) possibly_damaging(0.682) TCGA-55-7724-01 1 152325595 152325595 G T FLG2 Missense_Mutation p.S1556Y 0.10 benign(0.253) TCGA-55-7724-01 1 152327320 152327320 G T FLG2 Nonsense_Mutation p.S981* 0.13 TCGA-55-7724-01 1 153085023 153085023 A T SPRR2F Missense_Mutation p.C63S 0.06 unknown(0) TCGA-55-7724-01 1 154091215 154091215 T A NUP210L Missense_Mutation p.M466L 0.04 tolerated(0.72) benign(0.002) TCGA-55-7724-01 1 158615301 158615301 A T SPTA1 Nonsense_Mutation p.L1327* 0.04 TCGA-55-7724-01 1 159166875 159166875 T A CADM3 Intron 0.12 TCGA-55-7724-01 1 159410334 159410334 C A OR10J1 Nonsense_Mutation p.Y262* 0.12 TCGA-55-7724-01 1 167487723 167487723 G T CD247 5'UTR 0.11 TCGA-55-7724-01 1 173930982 173930982 C T RC3H1 Missense_Mutation p.E695K 0.09 deleterious(0.01) benign(0.069) TCGA-55-7724-01 1 179530487 179530487 C A NPHS2 Nonsense_Mutation p.E130* 0.05 TCGA-55-7724-01 1 179783246 179783246 C T FAM163A Silent p.P142P 0.13 TCGA-55-7724-01 1 190424025 190424025 C - BRINP3 5'UTR 0.10 TCGA-55-7724-01 1 206767018 206767018 T C EIF2D Missense_Mutation p.Q545R 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-55-7724-01 1 209956173 209956173 G C C1orf74 Silent p.L269L 0.06 TCGA-55-7724-01 1 22923960 22923960 A G EPHA8 Missense_Mutation p.I641V 0.06 tolerated(0.1) probably_damaging(0.94) TCGA-55-7724-01 1 237777522 237777522 G A RYR2 Silent p.L1698L 0.12 TCGA-55-7724-01 1 248129579 248129579 G T OR2AK2 Missense_Mutation p.V316L 0.12 tolerated(1) benign(0) TCGA-55-7724-01 1 248487753 248487753 T A OR2M7 Missense_Mutation p.M40L 0.10 tolerated(0.89) benign(0.001) TCGA-55-7724-01 1 248551699 248551699 T C OR2T6 Missense_Mutation p.S264P 0.08 deleterious(0.02) benign(0.25) TCGA-55-7724-01 1 248570332 248570332 A T OR2T1 Missense_Mutation p.D346V 0.13 deleterious(0.03) probably_damaging(0.973) TCGA-55-7724-01 1 34006172 34006172 G A CSMD2 Missense_Mutation p.T3051I 0.06 tolerated(0.45) probably_damaging(0.991) TCGA-55-7724-01 1 38227066 38227066 C A EPHA10 Intron 0.06 TCGA-55-7724-01 1 64669704 64669704 G A UBE2U 5'UTR 0.09 TCGA-55-7724-01 1 70740431 70740431 T A ANKRD13C Missense_Mutation p.S456C 0.05 tolerated(0.27) probably_damaging(0.998) TCGA-55-7724-01 1 85648436 85648436 G C SYDE2 Missense_Mutation p.T630R 0.14 tolerated(0.13) benign(0) TCGA-55-7724-01 1 95356740 95356740 G A SLC44A3 Missense_Mutation p.D513N 0.09 deleterious(0.02) probably_damaging(0.952) TCGA-55-7724-01 20 13850153 13850153 G C SEL1L2 Nonsense_Mutation p.Y417* 0.15 TCGA-55-7724-01 20 13983012 13983012 C G MACROD2 Nonsense_Mutation p.S42* 0.04 TCGA-55-7724-01 20 18123402 18123402 A T CSRP2BP Missense_Mutation p.E33V 0.10 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-55-7724-01 20 23472354 23472354 C A CST8 Missense_Mutation p.A17D 0.06 deleterious(0.01) benign(0.036) TCGA-55-7724-01 20 37394929 37394929 A G ACTR5 Missense_Mutation p.R448G 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-55-7724-01 20 44003715 44003715 G A TP53TG5 Silent p.S244S 0.10 TCGA-55-7724-01 20 49575502 49575502 A T MOCS3 Missense_Mutation p.E41D 0.10 tolerated(0.55) benign(0.001) TCGA-55-7724-01 21 43938522 43938522 A C SLC37A1 5'UTR 0.07 TCGA-55-7724-01 22 32555049 32555049 C A C22orf42 Missense_Mutation p.D52Y 0.06 deleterious_low_confidence(0.04) probably_damaging(0.934) TCGA-55-7724-01 22 36587493 36587493 A G APOL4 Missense_Mutation p.V228A 0.06 tolerated(0.15) benign(0.062) TCGA-55-7724-01 2 128747338 128747338 G A SAP130 Missense_Mutation p.S553L 0.08 tolerated_low_confidence(0.08) possibly_damaging(0.755) TCGA-55-7724-01 2 136575248 136575248 C G LCT Missense_Mutation p.W457S 0.14 deleterious(0) probably_damaging(0.987) TCGA-55-7724-01 2 152222726 152222726 C A TNFAIP6 Missense_Mutation p.P130Q 0.07 tolerated(0.14) benign(0.089) TCGA-55-7724-01 2 155252568 155252568 A G GALNT13 Missense_Mutation p.K408E 0.15 deleterious(0) possibly_damaging(0.467) TCGA-55-7724-01 2 155566211 155566211 C A KCNJ3 Missense_Mutation p.P267T 0.09 deleterious(0) probably_damaging(1) TCGA-55-7724-01 2 158182024 158182024 C T ERMN Missense_Mutation p.R57K 0.07 tolerated(0.14) benign(0.058) TCGA-55-7724-01 2 159488280 159488281 - T PKP4 Frame_Shift_Ins p.A391Cfs*2 0.11 TCGA-55-7724-01 2 161056565 161056565 C T ITGB6 Missense_Mutation p.E4K 0.12 tolerated(0.74) benign(0.001) TCGA-55-7724-01 2 166245178 166245178 C - SCN2A Frame_Shift_Del p.P1622Lfs*6 0.08 TCGA-55-7724-01 2 179642368 179642368 G C TTN Intron 0.10 TCGA-55-7724-01 2 182389982 182389982 T C ITGA4 Missense_Mutation p.I768T 0.11 deleterious(0) benign(0.328) TCGA-55-7724-01 2 197664358 197664358 A G GTF3C3 5'UTR 0.09 TCGA-55-7724-01 2 21245798 21245798 G A APOB Silent p.H907H 0.12 TCGA-55-7724-01 2 216262528 216262528 A C FN1 Missense_Mutation p.V1131G 0.05 deleterious(0) probably_damaging(0.951) TCGA-55-7724-01 2 226446843 226446843 A G NYAP2 Missense_Mutation p.D237G 0.09 tolerated(0.13) benign(0) TCGA-55-7724-01 2 241570285 241570285 G A GPR35 Missense_Mutation p.V337M 0.14 tolerated(0.36) benign(0.102) TCGA-55-7724-01 2 40657346 40657346 G A SLC8A1 Silent p.L25L 0.07 TCGA-55-7724-01 2 68608012 68608012 G C PLEK Missense_Mutation p.R119P 0.03 deleterious(0.01) possibly_damaging(0.866) TCGA-55-7724-01 2 75928338 75928338 C T GCFC2 Missense_Mutation p.R232K 0.06 tolerated(0.37) benign(0.008) TCGA-55-7724-01 2 89459249 89459249 T C IGKV6-21 Missense_Mutation p.S110G 0.09 tolerated(0.41) benign(0) TCGA-55-7724-01 2 90122080 90122080 C A IGKV1D-17 Missense_Mutation p.L100M 0.06 tolerated(0.05) possibly_damaging(0.846) TCGA-55-7724-01 3 101390835 101390835 T C ZBTB11 Missense_Mutation p.H178R 0.13 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-55-7724-01 3 108572771 108572771 T A TRAT1 3'UTR 0.09 TCGA-55-7724-01 3 11058860 11058860 G A SLC6A1 5'UTR 0.10 TCGA-55-7724-01 3 112666754 112666754 G C CD200R1 Missense_Mutation p.Q29E 0.05 tolerated(0.3) benign(0.002) TCGA-55-7724-01 3 113378654 113378654 T C KIAA2018 Silent p.P625P 0.14 TCGA-55-7724-01 3 121547451 121547451 G A IQCB1 Silent p.S43S 0.13 TCGA-55-7724-01 3 128345617 128345617 T C RPN1 Missense_Mutation p.I365M 0.20 deleterious(0.04) probably_damaging(0.961) TCGA-55-7724-01 3 129140646 129140646 C A EFCAB12 Missense_Mutation p.G17V 0.14 deleterious(0.02) possibly_damaging(0.504) TCGA-55-7724-01 3 147108886 147108886 C G ZIC4 Missense_Mutation p.S329T 0.13 deleterious(0) possibly_damaging(0.835) TCGA-55-7724-01 3 164725752 164725752 G T SI Missense_Mutation p.T1405K 0.25 tolerated(0.05) benign(0.007) TCGA-55-7724-01 3 165547467 165547467 C A BCHE Missense_Mutation p.R452L 0.10 deleterious(0) possibly_damaging(0.582) TCGA-55-7724-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.11 deleterious(0.04) probably_damaging(0.96) TCGA-55-7724-01 3 179287926 179287926 C T ACTL6A Silent p.G58G 0.09 TCGA-55-7724-01 3 182872155 182872155 A G LAMP3 Missense_Mutation p.M25T 0.09 tolerated(0.07) benign(0.004) TCGA-55-7724-01 3 184086079 184086079 C G POLR2H Missense_Mutation p.F150L 0.06 deleterious(0.01) possibly_damaging(0.557) TCGA-55-7724-01 3 191092900 191092900 A G CCDC50 Silent p.R166R 0.06 TCGA-55-7724-01 3 196673979 196673979 C T PIGZ 3'UTR 0.31 TCGA-55-7724-01 3 38936043 38936043 T C SCN11A Missense_Mutation p.Q939R 0.09 tolerated(0.42) benign(0.01) TCGA-55-7724-01 3 45715878 45715878 A G LIMD1 Missense_Mutation p.Y623C 0.16 deleterious(0) probably_damaging(0.971) TCGA-55-7724-01 3 49765625 49765625 C T IP6K1 Missense_Mutation p.D235N 0.16 deleterious(0.01) probably_damaging(1) TCGA-55-7724-01 3 98188893 98188893 T A OR5K1 Missense_Mutation p.I158N 0.09 deleterious(0) probably_damaging(0.953) TCGA-55-7724-01 4 106156588 106156588 A T TET2 Missense_Mutation p.T497S 0.21 tolerated_low_confidence(0.46) benign(0.005) TCGA-55-7724-01 4 1902635 1902635 G T WHSC1 Missense_Mutation p.R85L 0.25 tolerated(0.31) benign(0.015) TCGA-55-7724-01 5 101834232 101834232 C A SLCO6A1 Missense_Mutation p.R106L 0.22 tolerated(0.17) benign(0.394) TCGA-55-7724-01 5 133747356 133747356 G A CDKN2AIPNL Silent p.L64L 0.20 TCGA-55-7724-01 5 13786444 13786444 C T DNAH5 Silent p.E2888E 0.10 TCGA-55-7724-01 5 143853425 143853425 C T KCTD16 Silent p.P345P 0.17 TCGA-55-7724-01 5 145202687 145202687 G C PRELID2 Missense_Mutation p.P29R 0.12 tolerated(0.12) benign(0.151) TCGA-55-7724-01 5 50091199 50091199 C G PARP8 Nonsense_Mutation p.S459* 0.07 TCGA-55-7724-01 5 74137430 74137430 C T FAM169A Missense_Mutation p.M24I 0.22 tolerated(0.06) benign(0.135) TCGA-55-7724-01 5 86642487 86642487 A C RASA1 Splice_Site p.X350_splice 0.07 TCGA-55-7724-01 6 110768092 110768092 C G SLC22A16 Missense_Mutation p.R212P 0.07 deleterious(0) probably_damaging(0.998) TCGA-55-7724-01 6 127796879 127796879 G A SOGA3 Silent p.D764D 0.16 TCGA-55-7724-01 6 137245321 137245321 C A SLC35D3 Nonsense_Mutation p.C246* 0.12 TCGA-55-7724-01 6 152650896 152650896 C G SYNE1 Missense_Mutation p.G4975A 0.14 benign(0.006) TCGA-55-7724-01 6 152771825 152771825 A C SYNE1 Silent p.A1110A 0.07 TCGA-55-7724-01 6 165746519 165746519 C T PDE10A Missense_Mutation p.D789N 0.10 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-55-7724-01 6 29364823 29364823 T C OR12D2 Missense_Mutation p.M116T 0.09 deleterious(0) probably_damaging(1) TCGA-55-7724-01 6 31709022 31709022 C T MSH5 Missense_Mutation p.P77L 0.07 tolerated(0.28) benign(0.005) TCGA-55-7724-01 6 55145140 55145140 C A HCRTR2 Missense_Mutation p.H335N 0.07 tolerated(0.68) benign(0.005) TCGA-55-7724-01 6 7571787 7571787 C T DSP Nonsense_Mutation p.Q625* 0.14 TCGA-55-7724-01 6 97616094 97616094 T C MMS22L Silent p.A954A 0.13 TCGA-55-7724-01 7 100771931 100771931 G C SERPINE1 Missense_Mutation p.G86A 0.08 tolerated(0.25) benign(0.018) TCGA-55-7724-01 7 103191710 103191710 C T RELN Missense_Mutation p.A2036T 0.16 tolerated(0.55) benign(0.006) TCGA-55-7724-01 7 107398785 107398785 C T CBLL1 Missense_Mutation p.P213L 0.06 tolerated(0.11) possibly_damaging(0.79) TCGA-55-7724-01 7 120979309 120979309 C A WNT16 Missense_Mutation p.H336Q 0.21 deleterious(0.04) probably_damaging(0.949) TCGA-55-7724-01 7 126746621 126746621 G A GRM8 Missense_Mutation p.S219L 0.09 deleterious(0) probably_damaging(0.998) TCGA-55-7724-01 7 127964664 127964664 C A RBM28 Silent p.T429T 0.08 TCGA-55-7724-01 7 131878879 131878879 C T PLXNA4 Missense_Mutation p.C933Y 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-55-7724-01 7 137792186 137792186 T G AKR1D1 Missense_Mutation p.L239V 0.06 deleterious(0) benign(0.113) TCGA-55-7724-01 7 17879517 17879517 C G SNX13 Missense_Mutation p.Q424H 0.12 tolerated(0.13) benign(0.159) TCGA-55-7724-01 7 38305263 38305263 T C TRGC1 Silent p.A6A 0.11 TCGA-55-7724-01 7 44736966 44736966 C T OGDH Intron 0.11 TCGA-55-7724-01 7 49842409 49842409 G T VWC2 Missense_Mutation p.D267Y 0.08 deleterious(0) probably_damaging(0.979) TCGA-55-7724-01 7 53104220 53104220 G A POM121L12 Missense_Mutation p.E286K 0.10 deleterious_low_confidence(0.02) benign(0.013) TCGA-55-7724-01 7 82583230 82583230 C A PCLO Missense_Mutation p.V2347L 0.09 unknown(0) TCGA-55-7724-01 7 87031509 87031509 C G ABCB4 Missense_Mutation p.G1255A 0.06 deleterious(0) probably_damaging(1) TCGA-55-7724-01 7 87607717 87607717 G T ADAM22 Missense_Mutation p.V105L 0.14 tolerated(0.19) benign(0.001) TCGA-55-7724-01 7 92762765 92762765 C T SAMD9L Missense_Mutation p.M840I 0.08 tolerated(0.11) benign(0.251) TCGA-55-7724-01 7 93072950 93072950 C A CALCR Missense_Mutation p.K290N 0.06 tolerated(0.06) benign(0.076) TCGA-55-7724-01 7 94157528 94157528 G T CASD1 Missense_Mutation p.G142V 0.10 deleterious(0.04) benign(0.324) TCGA-55-7724-01 7 97481672 97481672 G A ASNS Missense_Mutation p.R529W 0.04 deleterious(0.03) possibly_damaging(0.656) TCGA-55-7724-01 7 97483918 97483918 G A ASNS Silent p.R404R 0.11 TCGA-55-7724-01 8 109001377 109001377 G A RSPO2 Nonsense_Mutation p.R64* 0.06 TCGA-55-7724-01 8 135615100 135615100 C A ZFAT Missense_Mutation p.A288S 0.09 deleterious(0) probably_damaging(0.997) TCGA-55-7724-01 8 135615101 135615101 C G ZFAT Missense_Mutation p.Q287H 0.11 deleterious(0.03) probably_damaging(0.997) TCGA-55-7724-01 8 1497614 1497614 A G DLGAP2 Missense_Mutation p.Q252R 0.15 tolerated(0.34) benign(0.004) TCGA-55-7724-01 8 19805713 19805713 C A LPL Silent p.I37I 0.05 TCGA-55-7724-01 8 22548112 22548112 G C EGR3 Missense_Mutation p.D346E 0.18 deleterious(0) probably_damaging(0.998) TCGA-55-7724-01 8 33451115 33451115 A G DUSP26 Silent p.F124F 0.10 TCGA-55-7724-01 8 79652271 79652271 T A IL7 Missense_Mutation p.N65I 0.10 deleterious(0) probably_damaging(0.98) TCGA-55-7724-01 8 82736126 82736126 C G SNX16 Missense_Mutation p.W171S 0.09 deleterious(0) probably_damaging(0.998) TCGA-55-7724-01 8 92407443 92407443 G A SLC26A7 3'Flank 0.28 TCGA-55-7724-01 8 99168473 99168473 A G POP1 Silent p.K751K 0.19 TCGA-55-7724-01 9 100995710 100995710 C A TBC1D2 Missense_Mutation p.A257S 0.09 tolerated(0.6) benign(0.015) TCGA-55-7724-01 9 119977009 119977009 C T ASTN2 Missense_Mutation p.A215T 0.23 deleterious_low_confidence(0.01) unknown(0) TCGA-55-7724-01 9 129458702 129458702 C T LMX1B Missense_Mutation p.S398F 0.07 deleterious(0.05) probably_damaging(1) TCGA-55-7724-01 9 84605739 84605739 C A SPATA31D1 Missense_Mutation p.N118K 0.13 tolerated(0.06) benign(0.001) TCGA-55-7724-01 9 84605740 84605740 C A SPATA31D1 Missense_Mutation p.H119N 0.14 tolerated(0.1) benign(0.066) TCGA-55-7724-01 9 84605839 84605839 G A SPATA31D1 Missense_Mutation p.A152T 0.09 tolerated(0.21) benign(0.109) TCGA-55-7724-01 9 87549173 87549173 G C NTRK2 Missense_Mutation p.C577S 0.07 tolerated(0.51) benign(0.001) TCGA-55-7724-01 9 99015147 99015147 G C HSD17B3 Missense_Mutation p.T108R 0.03 deleterious(0) possibly_damaging(0.905) TCGA-55-7724-01 X 101858806 101858806 T C ARMCX5 3'UTR 0.11 TCGA-55-7724-01 X 105868456 105868456 C G CXorf57 Missense_Mutation p.P308R 0.05 deleterious(0.02) possibly_damaging(0.862) TCGA-55-7724-01 X 109561258 109561258 G A AMMECR1 Silent p.S14S 0.13 TCGA-55-7724-01 X 109694746 109694746 G T RGAG1 Missense_Mutation p.D301Y 0.08 deleterious(0.01) possibly_damaging(0.603) TCGA-55-7724-01 X 117676931 117676931 G C DOCK11 Missense_Mutation p.V88L 0.07 deleterious(0.02) benign(0.217) TCGA-55-7724-01 X 118220818 118220818 T C KIAA1210 Missense_Mutation p.N1459D 0.08 tolerated(0.14) benign(0.047) TCGA-55-7724-01 X 120181571 120181571 G T GLUD2 Silent p.P11P 0.24 TCGA-55-7724-01 X 123040864 123040864 C G XIAP Missense_Mutation p.R443G 0.07 deleterious(0.02) benign(0.201) TCGA-55-7724-01 X 123587250 123587250 G A TENM1 Silent p.I1347I 0.07 TCGA-55-7724-01 X 123654532 123654532 G T TENM1 Missense_Mutation p.H1046N 0.13 tolerated(1) benign(0.029) TCGA-55-7724-01 X 127185978 127185978 A T ACTRT1 Missense_Mutation p.L70M 0.07 deleterious(0.03) probably_damaging(0.961) TCGA-55-7724-01 X 128582330 128582330 G T SMARCA1 Silent p.R1041R 0.10 TCGA-55-7724-01 X 134989508 134989508 T C SAGE1 Missense_Mutation p.M305T 0.16 tolerated(0.34) benign(0) TCGA-55-7724-01 X 135764989 135764989 C G ARHGEF6 Silent p.R469R 0.06 TCGA-55-7724-01 X 138714570 138714570 G T MCF2 Missense_Mutation p.P92H 0.07 deleterious(0) probably_damaging(1) TCGA-55-7724-01 X 138714571 138714571 G T MCF2 Missense_Mutation p.P92T 0.07 deleterious(0) probably_damaging(1) TCGA-55-7724-01 X 144904003 144904003 G T SLITRK2 Missense_Mutation p.E20D 0.12 tolerated(0.05) benign(0.109) TCGA-55-7724-01 X 151821537 151821537 G A GABRQ Silent p.E564E 0.14 TCGA-55-7724-01 X 153236139 153236139 G T HCFC1 Silent p.G51G 0.20 TCGA-55-7724-01 X 154157498 154157498 C G F8 Missense_Mutation p.D1523H 0.06 deleterious(0.01) possibly_damaging(0.647) TCGA-55-7724-01 X 155003483 155003483 A G SPRY3 5'UTR 0.08 TCGA-55-7724-01 X 15768256 15768256 A T CA5B Missense_Mutation p.Y37F 0.15 tolerated(0.63) benign(0.276) TCGA-55-7724-01 X 18944628 18944628 T G PHKA2 Missense_Mutation p.I468L 0.05 deleterious(0.05) benign(0.035) TCGA-55-7724-01 X 19369444 19369444 C A PDHA1 Missense_Mutation p.H151N 0.11 tolerated(0.38) probably_damaging(0.99) TCGA-55-7724-01 X 37028526 37028529 GCCT A FAM47C In_Frame_Del p.P683del 0.08 TCGA-55-7724-01 X 37028863 37028863 C G FAM47C Missense_Mutation p.R794G 0.08 deleterious(0.01) probably_damaging(0.989) TCGA-55-7724-01 X 44109460 44109460 G A EFHC2 Missense_Mutation p.R280W 0.10 deleterious(0) probably_damaging(0.987) TCGA-55-7724-01 X 49597217 49597217 C G PAGE4 Missense_Mutation p.P86A 0.10 tolerated(0.08) possibly_damaging(0.802) TCGA-55-7724-01 X 50053715 50053715 G A CCNB3 Missense_Mutation p.S849N 0.17 deleterious(0.02) benign(0.001) TCGA-55-7724-01 X 53432207 53432207 C G SMC1A Missense_Mutation p.E676D 0.21 tolerated(0.62) benign(0.005) TCGA-55-7724-01 X 54469901 54469901 G T TSR2 Missense_Mutation p.V81L 0.11 deleterious(0.01) possibly_damaging(0.679) TCGA-55-7724-01 X 57146385 57146385 G C SPIN2B Silent p.G226G 0.10 TCGA-55-7724-01 X 5810994 5810994 G T NLGN4X Missense_Mutation p.P772Q 0.08 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-55-7724-01 X 65475992 65475992 G T HEPH Missense_Mutation p.G960C 0.07 deleterious(0) probably_damaging(0.954) TCGA-55-7724-01 X 69649556 69649556 C T GDPD2 Nonsense_Mutation p.Q384* 0.11 TCGA-55-7724-01 X 76939375 76939375 G C ATRX Nonsense_Mutation p.S458* 0.06 TCGA-55-7724-01 X 77528786 77528786 A T CYSLTR1 Nonsense_Mutation p.L153* 0.10 TCGA-55-7724-01 X 83723856 83723856 T A HDX Missense_Mutation p.N292I 0.09 tolerated(0.16) benign(0) TCGA-55-7725-01 10 104176511 104176511 C A PSD Silent p.G95G 0.36 TCGA-55-7725-01 10 106737227 106737227 G T SORCS3 Silent p.V310V 0.29 TCGA-55-7725-01 10 125798150 125798150 G T CHST15 Silent p.A357A 0.26 TCGA-55-7725-01 10 134040358 134040358 C A STK32C Silent p.L195L 0.28 TCGA-55-7725-01 10 50820222 50820222 G T SLC18A3 Missense_Mutation p.R479L 0.19 tolerated(0.41) benign(0.006) TCGA-55-7725-01 10 5255089 5255089 C A AKR1C4 Missense_Mutation p.S271R 0.26 deleterious(0) probably_damaging(0.997) TCGA-55-7725-01 10 5435580 5435580 C T TUBAL3 Nonsense_Mutation p.W414* 0.23 TCGA-55-7725-01 11 123483506 123483506 G A GRAMD1B Missense_Mutation p.G510R 0.24 deleterious(0) probably_damaging(0.999) TCGA-55-7725-01 11 132307171 132307171 G T OPCML Missense_Mutation p.S203R 0.23 tolerated(0.16) possibly_damaging(0.852) TCGA-55-7725-01 11 15134077 15134077 G - INSC Frame_Shift_Del p.G22Efs*27 0.20 TCGA-55-7725-01 11 45265587 45265587 G T SYT13 3'UTR 0.31 TCGA-55-7725-01 11 46772739 46772739 T C CKAP5 Missense_Mutation p.M1797V 0.21 tolerated(1) benign(0) TCGA-55-7725-01 11 55110862 55110862 C A OR4A16 Silent p.A62A 0.30 TCGA-55-7725-01 11 55927730 55927730 C A OR8K5 Nonsense_Mutation p.E22* 0.27 TCGA-55-7725-01 11 56058108 56058108 A G OR8H1 Missense_Mutation p.V144A 0.21 tolerated(0.26) benign(0.347) TCGA-55-7725-01 11 56086307 56086307 T C OR8K3 Silent p.S175S 0.37 TCGA-55-7725-01 11 56143989 56143989 T A OR8U1 Missense_Mutation p.V297E 0.27 deleterious(0) probably_damaging(0.999) TCGA-55-7725-01 11 60059762 60059762 G A MS4A4A Missense_Mutation p.G36S 0.32 tolerated(0.17) benign(0.175) TCGA-55-7725-01 11 6260686 6260686 C A CNGA4 Silent p.V45V 0.26 TCGA-55-7725-01 11 89069012 89069012 C A NOX4 Splice_Site p.X539_splice 0.25 TCGA-55-7725-01 11 92085848 92085848 T C FAT3 Silent p.N190N 0.20 TCGA-55-7725-01 12 10999791 10999791 T C PRR4 Silent p.Q92Q 0.28 TCGA-55-7725-01 12 130184568 130184568 G C TMEM132D Missense_Mutation p.T252R 0.28 tolerated(0.07) benign(0.142) TCGA-55-7725-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.21 deleterious(0) possibly_damaging(0.479) TCGA-55-7725-01 12 32480566 32480566 G T BICD1 Missense_Mutation p.G393W 0.33 deleterious(0.02) possibly_damaging(0.795) TCGA-55-7725-01 12 4920664 4920664 C T KCNA6 Missense_Mutation p.A486V 0.24 tolerated_low_confidence(0.38) benign(0) TCGA-55-7725-01 12 5021881 5021881 C - KCNA1 Frame_Shift_Del p.S447Lfs*3 0.22 TCGA-55-7725-01 12 57861141 57861141 C A GLI1 Nonsense_Mutation p.S313* 0.20 TCGA-55-7725-01 12 78401020 78401020 C A NAV3 Missense_Mutation p.P568T 0.45 tolerated_low_confidence(0.09) benign(0.002) TCGA-55-7725-01 12 8612190 8612190 C T CLEC6A Intron 0.34 TCGA-55-7725-01 12 91550864 91550864 T A DCN Missense_Mutation p.S214C 0.19 deleterious(0.01) benign(0.246) TCGA-55-7725-01 13 101728293 101728293 C G NALCN Splice_Site p.X1296_splice 0.33 TCGA-55-7725-01 13 29287666 29287666 G A SLC46A3 Missense_Mutation p.R71C 0.10 deleterious(0) benign(0.013) TCGA-55-7725-01 13 70681625 70681625 C A KLHL1 Missense_Mutation p.W69C 0.37 tolerated_low_confidence(0.09) benign(0.428) TCGA-55-7725-01 14 25043939 25043939 G A CTSG Missense_Mutation p.A94V 0.27 deleterious(0.02) benign(0.443) TCGA-55-7725-01 14 31777181 31777181 A G AL136418.1 5'Flank 0.45 TCGA-55-7725-01 14 32561858 32561858 A - ARHGAP5 Frame_Shift_Del p.F662Lfs*7 0.22 TCGA-55-7725-01 14 95669278 95669278 C A CLMN Missense_Mutation p.G803V 0.35 deleterious(0.03) benign(0.07) TCGA-55-7725-01 15 24923451 24923451 G T NPAP1 Missense_Mutation p.A813S 0.32 tolerated_low_confidence(0.61) benign(0.148) TCGA-55-7725-01 15 50581768 50581768 T A GABPB1 Silent p.T277T 0.25 TCGA-55-7725-01 16 16149958 16149958 A T ABCC1 Missense_Mutation p.M495L 0.09 deleterious(0) benign(0.171) TCGA-55-7725-01 16 1712802 1712802 G T CRAMP1L Missense_Mutation p.R879L 0.20 deleterious(0) probably_damaging(0.935) TCGA-55-7725-01 16 29818879 29818879 C T MAZ Missense_Mutation p.A258V 0.44 tolerated(0.24) benign(0.014) TCGA-55-7725-01 16 7721575 7721575 C A RBFOX1 Missense_Mutation p.P323T 0.08 deleterious(0.02) benign(0.22) TCGA-55-7725-01 16 7721577 7721577 T A RBFOX1 Silent p.P323P 0.08 TCGA-55-7725-01 17 10415801 10415801 C A MYH1 Silent p.G357G 0.25 TCGA-55-7725-01 17 1326904 1326904 C - CRK Frame_Shift_Del p.G273Vfs*66 0.20 TCGA-55-7725-01 18 28989467 28989467 C A DSG4 Silent p.G662G 0.47 TCGA-55-7725-01 19 10102481 10102481 C A COL5A3 Nonsense_Mutation p.G644* 0.25 TCGA-55-7725-01 19 11916992 11916992 A G ZNF491 Missense_Mutation p.Y75C 0.30 tolerated(0.06) possibly_damaging(0.516) TCGA-55-7725-01 19 15794303 15794303 G T CYP4F12 Missense_Mutation p.E216D 0.25 tolerated(0.09) benign(0.188) TCGA-55-7725-01 19 16504811 16504811 G A EPS15L1 Silent p.G639G 0.37 TCGA-55-7725-01 19 17778956 17778956 C A UNC13A Missense_Mutation p.E146D 0.29 tolerated_low_confidence(0.08) benign(0.318) TCGA-55-7725-01 19 22256306 22256306 C G ZNF257 Missense_Mutation p.L56V 0.24 deleterious(0) possibly_damaging(0.656) TCGA-55-7725-01 19 35624632 35624632 G T LGI4 Missense_Mutation p.D93E 0.10 tolerated(0.17) possibly_damaging(0.522) TCGA-55-7725-01 19 36395469 36395469 G A TYROBP 3'UTR 0.12 TCGA-55-7725-01 19 375671 375671 A T THEG Silent p.P100P 0.15 TCGA-55-7725-01 19 51503928 51503928 C G KLK8 Missense_Mutation p.L39F 0.37 tolerated_low_confidence(0.25) benign(0.018) TCGA-55-7725-01 19 52003556 52003556 T A SIGLEC12 Splice_Site p.X143_splice 0.31 TCGA-55-7725-01 19 54782278 54782278 G T LILRB2 Missense_Mutation p.P365Q 0.27 deleterious(0.03) possibly_damaging(0.9) TCGA-55-7725-01 19 54876437 54876437 G T LAIR1 5'UTR 0.39 TCGA-55-7725-01 19 8997417 8997417 C A MUC16 Missense_Mutation p.G13669C 0.32 probably_damaging(0.999) TCGA-55-7725-01 19 9060180 9060180 G T MUC16 Missense_Mutation p.T9089K 0.13 unknown(0) TCGA-55-7725-01 1 107973521 107973521 G A NTNG1 Missense_Mutation p.D413N 0.28 deleterious(0.04) possibly_damaging(0.697) TCGA-55-7725-01 1 119427455 119427455 C A TBX15 Missense_Mutation p.S464I 0.31 deleterious_low_confidence(0) possibly_damaging(0.462) TCGA-55-7725-01 1 120254587 120254587 C T PHGDH 5'UTR 0.40 TCGA-55-7725-01 1 13497721 13497721 C G PRAMEF16 Missense_Mutation p.L340V 0.32 deleterious(0) probably_damaging(0.986) TCGA-55-7725-01 1 158627389 158627389 G T SPTA1 Missense_Mutation p.L895I 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-7725-01 1 161011631 161011631 C A USF1 Silent p.V94V 0.47 TCGA-55-7725-01 1 165865506 165865506 C A UCK2 Silent p.R146R 0.13 TCGA-55-7725-01 1 192127884 192127884 C A RGS18 Silent p.I39I 0.24 TCGA-55-7725-01 1 196871712 196871712 C A CFHR4 Missense_Mutation p.Q74K 0.34 tolerated(0.7) probably_damaging(0.955) TCGA-55-7725-01 1 215821947 215821947 T C USH2A Silent p.P4835P 0.29 TCGA-55-7725-01 1 228505241 228505241 C T OBSCN Silent p.P5503P 0.30 TCGA-55-7725-01 1 23660011 23660011 C A HNRNPR Missense_Mutation p.E166D 0.23 deleterious(0) probably_damaging(0.96) TCGA-55-7725-01 1 236891020 236891020 C G ACTN2 Missense_Mutation p.H193Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-55-7725-01 1 248309230 248309230 C T OR2M5 Missense_Mutation p.R261W 0.15 deleterious(0.04) benign(0.007) TCGA-55-7725-01 1 248651946 248651946 G T OR2T5 Missense_Mutation p.M19I 0.31 tolerated(0.06) benign(0.001) TCGA-55-7725-01 1 27056169 27056169 A T ARID1A Nonsense_Mutation p.K389* 0.23 TCGA-55-7725-01 1 33333813 33333813 C T FNDC5 Silent p.E54E 0.29 TCGA-55-7725-01 1 60377303 60377303 A G CYP2J2 Silent p.L221L 0.14 TCGA-55-7725-01 1 89448581 89448581 T C RBMXL1 Missense_Mutation p.Y310C 0.26 deleterious(0.02) benign(0.028) TCGA-55-7725-01 20 42788419 42788419 G A JPH2 Silent p.R336R 0.24 TCGA-55-7725-01 20 48273160 48273160 A C B4GALT5 Nonsense_Mutation p.Y65* 0.20 TCGA-55-7725-01 22 18846067 18846067 C A BCRP7 RNA 0.05 TCGA-55-7725-01 22 37266471 37266471 G T NCF4 Silent p.L119L 0.34 TCGA-55-7725-01 22 38259297 38259297 C G EIF3L Missense_Mutation p.P175R 0.36 deleterious(0.05) benign(0.051) TCGA-55-7725-01 22 38474282 38474282 G T SLC16A8 3'UTR 0.33 TCGA-55-7725-01 22 41734353 41734353 G C ZC3H7B Missense_Mutation p.E207Q 0.28 tolerated(0.07) benign(0.013) TCGA-55-7725-01 2 145147526 145147526 G T ZEB2 Nonsense_Mutation p.S1046* 0.23 TCGA-55-7725-01 2 155711395 155711395 A T KCNJ3 Missense_Mutation p.K359I 0.24 deleterious(0) probably_damaging(0.96) TCGA-55-7725-01 2 158406754 158406754 C A ACVR1C Missense_Mutation p.W232L 0.26 deleterious(0) probably_damaging(1) TCGA-55-7725-01 2 178682641 178682641 C T PDE11A Missense_Mutation p.V530M 0.17 tolerated(0.06) probably_damaging(0.996) TCGA-55-7725-01 2 198570447 198570447 G T MARS2 Silent p.A106A 0.33 TCGA-55-7725-01 2 222294680 222294680 G T EPHA4 Silent p.S896S 0.33 TCGA-55-7725-01 2 228552263 228552263 T C SLC19A3 Silent p.A447A 0.25 TCGA-55-7725-01 2 241724433 241724433 G C KIF1A Missense_Mutation p.D231E 0.22 deleterious(0.02) benign(0.022) TCGA-55-7725-01 2 33572462 33572462 G C LTBP1 Silent p.G1295G 0.35 TCGA-55-7725-01 2 37088298 37088298 T C STRN Missense_Mutation p.N549S 0.27 tolerated(0.14) benign(0.299) TCGA-55-7725-01 3 125843207 125843207 C A ALDH1L1 Missense_Mutation p.G640C 0.17 deleterious(0) probably_damaging(0.966) TCGA-55-7725-01 3 165548239 165548239 C A BCHE Missense_Mutation p.G195C 0.30 deleterious(0) probably_damaging(1) TCGA-55-7725-01 3 170732306 170732306 C T SLC2A2 Missense_Mutation p.G108E 0.36 deleterious(0) probably_damaging(1) TCGA-55-7725-01 3 179051622 179051622 G T ZNF639 Missense_Mutation p.W290C 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-55-7725-01 3 197751542 197751542 C T LMLN Silent p.N550N 0.35 TCGA-55-7725-01 3 46593050 46593050 G A LRRC2 Missense_Mutation p.S11F 0.19 deleterious(0) probably_damaging(0.936) TCGA-55-7725-01 3 48622506 48622506 G A COL7A1 Missense_Mutation p.A1313V 0.50 unknown(0) TCGA-55-7725-01 3 49934039 49934039 C T MST1R Silent p.Q791Q 0.42 TCGA-55-7725-01 3 50685429 50685429 A T MAPKAPK3 Missense_Mutation p.K367N 0.18 tolerated(0.05) benign(0.023) TCGA-55-7725-01 4 114275061 114275061 A T ANK2 Missense_Mutation p.I1763F 0.32 possibly_damaging(0.646) TCGA-55-7725-01 4 138451547 138451547 T C PCDH18 Missense_Mutation p.I566V 0.29 tolerated(1) benign(0.022) TCGA-55-7725-01 4 15716986 15716986 T A BST1 Splice_Site p.X204_splice 0.17 TCGA-55-7725-01 4 159568146 159568146 C - RXFP1 Frame_Shift_Del p.P517Lfs*5 0.22 TCGA-55-7725-01 4 177142395 177142395 A T ASB5 Missense_Mutation p.V194D 0.26 deleterious(0) possibly_damaging(0.87) TCGA-55-7725-01 5 110782425 110782425 A T CAMK4 Silent p.P167P 0.31 TCGA-55-7725-01 5 133304269 133304269 C A C5orf15 Missense_Mutation p.A3S 0.27 deleterious_low_confidence(0.01) benign(0.292) TCGA-55-7725-01 5 140557591 140557591 C A PCDHB8 5'UTR 0.22 TCGA-55-7725-01 5 140626445 140626445 C A PCDHB15 Silent p.T433T 0.28 TCGA-55-7725-01 5 140810956 140810956 G T PCDHGA12 Silent p.L210L 0.38 TCGA-55-7725-01 5 149677134 149677134 G T ARSI Missense_Mutation p.N451K 0.34 tolerated(0.29) benign(0.05) TCGA-55-7725-01 5 16463792 16463792 C A ZNF622 Missense_Mutation p.D229Y 0.15 deleterious(0.02) benign(0.091) TCGA-55-7725-01 5 16463793 16463793 G A ZNF622 Silent p.D228D 0.15 TCGA-55-7725-01 5 170818327 170818327 G T NPM1 Missense_Mutation p.A53S 0.44 deleterious(0.04) possibly_damaging(0.894) TCGA-55-7725-01 5 175110541 175110541 G T HRH2 Missense_Mutation p.C102F 0.24 deleterious(0) probably_damaging(1) TCGA-55-7725-01 5 178418469 178418469 G T GRM6 Silent p.P271P 0.28 TCGA-55-7725-01 5 35700661 35700661 G T SPEF2 Missense_Mutation p.Q735H 0.60 tolerated(0.11) benign(0.431) TCGA-55-7725-01 5 82816757 82816757 A G VCAN Missense_Mutation p.K878E 0.23 tolerated(0.32) benign(0.065) TCGA-55-7725-01 6 117866753 117866754 - A DCBLD1 Frame_Shift_Ins p.M537Nfs*43 0.09 TCGA-55-7725-01 6 133078832 133078832 G T VNN2 Missense_Mutation p.A64E 0.33 deleterious(0.02) possibly_damaging(0.528) TCGA-55-7725-01 6 136582546 136582546 C A BCLAF1 Missense_Mutation p.G872C 0.13 deleterious(0) probably_damaging(0.984) TCGA-55-7725-01 6 157469810 157469811 - G ARID1B Frame_Shift_Ins p.G871Rfs*71 0.25 TCGA-55-7725-01 6 159029488 159029488 G A TMEM181 Missense_Mutation p.R403H 0.35 deleterious(0) probably_damaging(0.999) TCGA-55-7725-01 6 33658712 33658712 C T ITPR3 Missense_Mutation p.R2351C 0.19 deleterious(0) probably_damaging(0.998) TCGA-55-7725-01 6 84301006 84301006 A T SNAP91 Missense_Mutation p.F646L 0.48 deleterious(0.03) probably_damaging(0.914) TCGA-55-7725-01 7 128470746 128470746 G A FLNC Missense_Mutation p.D19N 0.35 tolerated(0.08) benign(0.195) TCGA-55-7725-01 7 129856175 129856176 - T SSMEM1 Frame_Shift_Ins p.C201Lfs*36 0.15 TCGA-55-7725-01 7 29103807 29103807 G A CPVL Missense_Mutation p.P336L 0.33 deleterious(0.01) possibly_damaging(0.828) TCGA-55-7725-01 7 4798734 4798734 G T FOXK1 Missense_Mutation p.G433C 0.36 deleterious(0) probably_damaging(0.999) TCGA-55-7725-01 7 75221730 75221730 C T HIP1 Missense_Mutation p.C96Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-7725-01 7 92000845 92000845 C A ANKIB1 Missense_Mutation p.T514N 0.38 tolerated(0.06) probably_damaging(0.982) TCGA-55-7725-01 8 145011192 145011192 G A PLEC Silent p.P267P 0.19 TCGA-55-7725-01 8 39494786 39494786 G T ADAM18 Missense_Mutation p.D198Y 0.30 deleterious(0) probably_damaging(0.998) TCGA-55-7725-01 8 42863022 42863022 A G HOOK3 Missense_Mutation p.Q563R 0.31 tolerated(0.07) benign(0.322) TCGA-55-7725-01 8 51363285 51363285 A T SNTG1 Missense_Mutation p.E120V 0.16 deleterious(0) probably_damaging(0.993) TCGA-55-7725-01 8 6783429 6783429 C T DEFA6 Silent p.G43G 0.25 TCGA-55-7725-01 9 113704290 113704290 T C LPAR1 Silent p.L68L 0.23 TCGA-55-7725-01 9 125613429 125613429 G A RC3H2 Missense_Mutation p.P1104L 0.27 tolerated_low_confidence(0.17) benign(0) TCGA-55-7725-01 9 27950644 27950644 C A LINGO2 Missense_Mutation p.W9L 0.31 deleterious(0.03) probably_damaging(0.991) TCGA-55-7725-01 9 70993155 70993155 C A PGM5 Missense_Mutation p.T101K 0.18 deleterious(0) probably_damaging(1) TCGA-55-7725-01 9 98220527 98220527 T C PTCH1 Missense_Mutation p.N979S 0.17 tolerated(0.39) benign(0.241) TCGA-55-7725-01 X 117960178 117960178 G T ZCCHC12 Missense_Mutation p.G324V 0.31 deleterious(0.03) possibly_damaging(0.871) TCGA-55-7725-01 X 122561800 122561800 C A GRIA3 Missense_Mutation p.S629Y 0.29 deleterious(0) probably_damaging(1) TCGA-55-7725-01 X 129040175 129040175 C A UTP14A 5'UTR 0.24 TCGA-55-7725-01 X 140993298 140993298 G A MAGEC1 Silent p.Q36Q 0.21 TCGA-55-7725-01 X 140993708 140993708 C A MAGEC1 Missense_Mutation p.S173Y 0.21 deleterious_low_confidence(0) benign(0.017) TCGA-55-7725-01 X 152773722 152773722 C A BGN Missense_Mutation p.S309Y 0.24 tolerated(0.08) possibly_damaging(0.789) TCGA-55-7725-01 X 152954185 152954185 C G SLC6A8 Silent p.R52R 0.25 TCGA-55-7725-01 X 154274857 154274857 C T FUNDC2 Nonsense_Mutation p.Q120* 0.12 TCGA-55-7725-01 X 18675776 18675776 C A RS1 Missense_Mutation p.G21V 0.21 deleterious_low_confidence(0.01) benign(0.011) TCGA-55-7725-01 X 22129677 22129677 G A PHEX Missense_Mutation p.R391K 0.32 tolerated(1) probably_damaging(0.995) TCGA-55-7725-01 X 34962676 34962676 G - FAM47B Frame_Shift_Del p.K576Nfs*22 0.19 TCGA-55-7725-01 X 48858616 48858616 C G GRIPAP1 Missense_Mutation p.E9Q 0.16 probably_damaging(0.999) TCGA-55-7725-01 X 69595170 69595170 C A KIF4A Missense_Mutation p.T632N 0.34 tolerated(0.07) benign(0.05) TCGA-55-7725-01 X 70779527 70779527 G - OGT Frame_Shift_Del 0.19 TCGA-55-7725-01 X 86921542 86921542 T A KLHL4 Intron 0.29 TCGA-55-7726-01 10 117884826 117884826 G A GFRA1 Nonsense_Mutation p.R226* 0.15 TCGA-55-7726-01 10 124402690 124402690 G T DMBT1 Missense_Mutation p.A2340S 0.21 deleterious(0.02) probably_damaging(0.983) TCGA-55-7726-01 10 37431192 37431192 A T ANKRD30A Missense_Mutation p.E400V 0.18 deleterious(0.05) possibly_damaging(0.788) TCGA-55-7726-01 11 32635535 32635535 G C CCDC73 Missense_Mutation p.L777V 0.18 deleterious(0.05) benign(0.187) TCGA-55-7726-01 11 3800193 3800193 T C NUP98 Missense_Mutation p.N89D 0.08 tolerated(0.07) probably_damaging(0.94) TCGA-55-7726-01 11 43333683 43333683 G C API5 Silent p.P2P 0.17 TCGA-55-7726-01 11 59812153 59812153 G C OOSP2 Missense_Mutation p.E85Q 0.16 tolerated(0.37) probably_damaging(0.923) TCGA-55-7726-01 11 6265487 6265487 G C CNGA4 Missense_Mutation p.A526P 0.10 deleterious(0) possibly_damaging(0.601) TCGA-55-7726-01 11 64787927 64787927 A G ARL2 Missense_Mutation p.K126E 0.12 deleterious(0) probably_damaging(0.984) TCGA-55-7726-01 11 65341071 65341071 C T FAM89B Missense_Mutation p.R177C 0.19 deleterious(0) probably_damaging(0.992) TCGA-55-7726-01 11 67925781 67925781 C G SUV420H1 Missense_Mutation p.V678L 0.21 tolerated_low_confidence(0.67) benign(0.033) TCGA-55-7726-01 12 120510394 120510394 C T CCDC64 Missense_Mutation p.S390L 0.25 deleterious(0) probably_damaging(0.999) TCGA-55-7726-01 12 120510439 120510439 C T CCDC64 Missense_Mutation p.S405L 0.23 tolerated(0.19) benign(0.323) TCGA-55-7726-01 12 120613633 120613633 G C GCN1L1 Missense_Mutation p.L320V 0.17 benign(0) TCGA-55-7726-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.55 deleterious(0.04) probably_damaging(0.993) TCGA-55-7726-01 12 43846118 43846118 C T ADAMTS20 Missense_Mutation p.G680R 0.37 deleterious(0) probably_damaging(0.911) TCGA-55-7726-01 12 46298746 46298746 C G ARID2 Nonsense_Mutation p.S1798* 0.15 TCGA-55-7726-01 12 52309021 52309021 C G ACVRL1 Nonsense_Mutation p.S262* 0.23 TCGA-55-7726-01 12 56600162 56600162 C T RNF41 3'UTR 0.18 TCGA-55-7726-01 12 56600242 56600242 C G RNF41 Missense_Mutation p.E315Q 0.20 deleterious(0.02) probably_damaging(0.969) TCGA-55-7726-01 12 56600556 56600556 C G RNF41 Missense_Mutation p.R210T 0.12 tolerated(0.1) probably_damaging(0.943) TCGA-55-7726-01 12 58023955 58023955 T A B4GALNT1 Missense_Mutation p.Q231L 0.07 tolerated(0.06) benign(0.005) TCGA-55-7726-01 12 76424317 76424317 C G PHLDA1 Nonstop_Mutation p.*402Sext*11 0.14 TCGA-55-7726-01 12 76424750 76424750 C G PHLDA1 Missense_Mutation p.E258Q 0.20 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-55-7726-01 12 76425191 76425191 C G PHLDA1 Missense_Mutation p.E111Q 0.50 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-55-7726-01 12 92538099 92538099 A G BTG1 Silent p.S91S 0.19 TCGA-55-7726-01 13 113510301 113510301 G C ATP11A Missense_Mutation p.D774H 0.20 deleterious_low_confidence(0) possibly_damaging(0.841) TCGA-55-7726-01 13 73346337 73346337 T G DIS3 Missense_Mutation p.D488A 0.18 deleterious(0) probably_damaging(1) TCGA-55-7726-01 14 20612192 20612192 C G OR4N5 Missense_Mutation p.Q100E 0.10 deleterious(0) probably_damaging(0.989) TCGA-55-7726-01 14 22592028 22592028 C G TRAV26-1 Missense_Mutation p.P38R 0.07 deleterious(0.03) benign(0.011) TCGA-55-7726-01 14 89077222 89077222 C G ZC3H14 Missense_Mutation p.F714L 0.19 deleterious(0) probably_damaging(0.995) TCGA-55-7726-01 14 91161916 91161916 C G TTC7B Missense_Mutation p.L235F 0.14 deleterious(0) probably_damaging(0.968) TCGA-55-7726-01 15 50769116 50769116 G T USP8 Missense_Mutation p.C307F 0.20 tolerated(1) probably_damaging(0.997) TCGA-55-7726-01 15 52622589 52622589 T A MYO5A Nonsense_Mutation p.K1481* 0.17 TCGA-55-7726-01 15 62169209 62169209 T G VPS13C Missense_Mutation p.Q3396P 0.08 deleterious(0) possibly_damaging(0.772) TCGA-55-7726-01 16 1705274 1705274 G C CRAMP1L Missense_Mutation p.Q364H 0.51 deleterious(0.02) probably_damaging(0.991) TCGA-55-7726-01 16 30490717 30490717 G A ITGAL Missense_Mutation p.E171K 0.12 deleterious(0.01) possibly_damaging(0.796) TCGA-55-7726-01 16 30732535 30732535 G A SRCAP Silent p.L1093L 0.18 TCGA-55-7726-01 16 30905233 30905233 C T BCL7C Silent p.R11R 0.07 TCGA-55-7726-01 16 3562389 3562389 G A CLUAP1 Missense_Mutation p.D136N 0.05 deleterious(0) possibly_damaging(0.531) TCGA-55-7726-01 16 3781195 3781195 C T CREBBP Missense_Mutation p.E1724K 0.17 unknown(0) TCGA-55-7726-01 16 3789613 3789613 C G CREBBP Missense_Mutation p.E1416Q 0.22 unknown(0) TCGA-55-7726-01 16 53636079 53636079 C T RPGRIP1L Missense_Mutation p.G1286D 0.27 tolerated(0.28) benign(0.071) TCGA-55-7726-01 16 67267932 67267932 C T FHOD1 Silent p.L558L 0.10 TCGA-55-7726-01 17 10248849 10248849 C A MYH13 Missense_Mutation p.D450Y 0.30 tolerated(0.06) probably_damaging(0.999) TCGA-55-7726-01 17 1657465 1657465 G C SERPINF2 Missense_Mutation p.Q371H 0.12 tolerated(0.08) benign(0.027) TCGA-55-7726-01 17 41365217 41365217 G A TMEM106A Missense_Mutation p.D53N 0.10 tolerated(0.5) benign(0.002) TCGA-55-7726-01 17 55478817 55478817 C T MSI2 Silent p.F130F 0.26 TCGA-55-7726-01 17 61781922 61781922 G A STRADA Silent p.N293N 0.22 TCGA-55-7726-01 17 650277 650277 G A GEMIN4 Missense_Mutation p.R336C 0.12 deleterious(0.03) benign(0.002) TCGA-55-7726-01 17 72759559 72759559 C T SLC9A3R1 Silent p.I219I 0.26 TCGA-55-7726-01 17 7578507 7578507 G T TP53 Nonsense_Mutation p.C141* 0.20 TCGA-55-7726-01 17 76497996 76497996 C T DNAH17-AS1 3'UTR 0.17 TCGA-55-7726-01 18 18586533 18586533 C G ROCK1 Missense_Mutation p.R555T 0.19 deleterious(0.01) possibly_damaging(0.782) TCGA-55-7726-01 18 43216966 43216966 C A SLC14A2 Missense_Mutation p.S221Y 0.22 tolerated(0.06) possibly_damaging(0.492) TCGA-55-7726-01 19 10369342 10369342 C T MRPL4 Silent p.F240F 0.10 TCGA-55-7726-01 19 10823678 10823678 G A QTRT1 Missense_Mutation p.A341T 0.25 deleterious(0.04) possibly_damaging(0.871) TCGA-55-7726-01 19 14070103 14070103 C A DCAF15 Missense_Mutation p.P344H 0.10 deleterious(0.03) benign(0.233) TCGA-55-7726-01 19 2290251 2290251 C G LINGO3 Missense_Mutation p.E509Q 0.14 tolerated(0.58) benign(0.006) TCGA-55-7726-01 19 31770038 31770038 C T TSHZ3 Missense_Mutation p.A221T 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-7726-01 19 39103253 39103253 G A MAP4K1 Silent p.L221L 0.32 TCGA-55-7726-01 19 46283521 46283521 C A DMPK 5'UTR 0.14 TCGA-55-7726-01 19 46857226 46857226 G A PPP5C Missense_Mutation p.A115T 0.14 deleterious(0.01) possibly_damaging(0.718) TCGA-55-7726-01 19 49841253 49841253 G - CD37 Frame_Shift_Del p.A139Pfs*29 0.19 TCGA-55-7726-01 19 55340825 55340825 G T KIR3DL1 Missense_Mutation p.R337I 0.09 deleterious(0.01) benign(0.005) TCGA-55-7726-01 19 56466501 56466501 G A NLRP8 Silent p.T359T 0.33 TCGA-55-7726-01 19 8564207 8564207 G A PRAM1 Missense_Mutation p.A162V 0.25 tolerated(0.3) benign(0.007) TCGA-55-7726-01 1 113637318 113637318 G C LRIG2 Silent p.R248R 0.13 TCGA-55-7726-01 1 156235927 156235927 A G SMG5 Silent p.S500S 0.14 TCGA-55-7726-01 1 173720961 173720961 C G KLHL20 Missense_Mutation p.S219C 0.20 tolerated(0.1) benign(0.075) TCGA-55-7726-01 1 186120395 186120395 C T HMCN1 Missense_Mutation p.A4891V 0.15 benign(0.252) TCGA-55-7726-01 1 202912932 202912932 C T ADIPOR1 Silent p.A253A 0.15 TCGA-55-7726-01 1 204944417 204944417 G A NFASC Missense_Mutation p.R526Q 0.12 tolerated(0.09) benign(0.121) TCGA-55-7726-01 1 234566017 234566017 C G TARBP1 Missense_Mutation p.V809L 0.16 tolerated(0.14) benign(0.257) TCGA-55-7726-01 1 51253830 51253830 C G FAF1 Missense_Mutation p.S70T 0.21 tolerated(0.24) benign(0.016) TCGA-55-7726-01 1 78189060 78189060 C G USP33 Missense_Mutation p.D480H 0.26 deleterious(0) probably_damaging(1) TCGA-55-7726-01 20 10030698 10030698 C G ANKEF1 Nonsense_Mutation p.S494* 0.08 TCGA-55-7726-01 20 18142502 18142502 G C CSRP2BP Missense_Mutation p.E241Q 0.19 tolerated(0.06) benign(0.022) TCGA-55-7726-01 20 3211402 3211402 C T SLC4A11 Missense_Mutation p.A463T 0.07 deleterious(0.04) possibly_damaging(0.538) TCGA-55-7726-01 20 50407635 50407635 C G SALL4 Missense_Mutation p.D463H 0.14 deleterious_low_confidence(0) benign(0.006) TCGA-55-7726-01 20 60907449 60907449 G A LAMA5 Silent p.A1177A 0.07 TCGA-55-7726-01 21 39671975 39671975 G A KCNJ15 Silent p.L264L 0.28 TCGA-55-7726-01 21 47987566 47987566 G A DIP2A 3'UTR 0.10 TCGA-55-7726-01 22 19709227 19709227 G A SEPT5 Missense_Mutation p.R261Q 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-55-7726-01 22 33255201 33255201 C T TIMP3 Missense_Mutation p.T158I 0.53 deleterious(0) possibly_damaging(0.61) TCGA-55-7726-01 22 35817407 35817407 C T MCM5 Silent p.L643L 0.28 TCGA-55-7726-01 22 38154137 38154137 G C TRIOBP Missense_Mutation p.E2069Q 0.20 tolerated(0.09) probably_damaging(0.989) TCGA-55-7726-01 22 39357577 39357577 G A APOBEC3A Silent p.V120V 0.25 TCGA-55-7726-01 22 50315265 50315265 G T CRELD2 Missense_Mutation p.G150W 0.04 deleterious(0) probably_damaging(1) TCGA-55-7726-01 2 128870740 128870740 A T UGGT1 Missense_Mutation p.I202F 0.28 tolerated(0.08) benign(0.005) TCGA-55-7726-01 2 133541671 133541671 C T NCKAP5 Missense_Mutation p.D905N 0.34 tolerated(0.16) benign(0.039) TCGA-55-7726-01 2 168105622 168105622 C G XIRP2 Missense_Mutation p.Q2574E 0.21 benign(0) TCGA-55-7726-01 2 204030880 204030882 AAG - NBEAL1 In_Frame_Del p.E1881del 0.33 TCGA-55-7726-01 2 242187753 242187753 C A HDLBP Missense_Mutation p.R508L 0.25 tolerated(0.07) benign(0.119) TCGA-55-7726-01 2 242741340 242741340 A G GAL3ST2 Silent p.S88S 0.08 TCGA-55-7726-01 2 61484020 61484020 C T USP34 Missense_Mutation p.M2038I 0.09 deleterious(0) probably_damaging(0.997) TCGA-55-7726-01 2 73493698 73493698 C T FBXO41 Missense_Mutation p.E340K 0.12 deleterious(0.03) possibly_damaging(0.532) TCGA-55-7726-01 2 96964614 96964614 C T SNRNP200 Missense_Mutation p.R274H 0.29 tolerated(0.08) benign(0.416) TCGA-55-7726-01 3 112991470 112991470 C G BOC Nonsense_Mutation p.S294* 0.23 TCGA-55-7726-01 3 119434438 119434438 C T MAATS1 Missense_Mutation p.S177F 0.18 deleterious(0.04) benign(0.275) TCGA-55-7726-01 3 167023506 167023506 G C ZBBX Missense_Mutation p.I550M 0.35 tolerated(0.07) possibly_damaging(0.672) TCGA-55-7726-01 3 182738007 182738007 C G MCCC1 Missense_Mutation p.D630H 0.11 tolerated(0.16) benign(0.009) TCGA-55-7726-01 3 37081768 37081768 C G MLH1 Silent p.L550L 0.22 TCGA-55-7726-01 3 37565099 37565099 C T ITGA9 Missense_Mutation p.P442S 0.09 tolerated(0.73) benign(0.14) TCGA-55-7726-01 3 39139759 39139759 C T GORASP1 Missense_Mutation p.D431N 0.28 deleterious_low_confidence(0.01) benign(0.001) TCGA-55-7726-01 3 48602539 48602539 C A COL7A1 Intron 0.32 TCGA-55-7726-01 4 111542381 111542381 G A PITX2 Missense_Mutation p.P117L 0.19 deleterious(0) probably_damaging(1) TCGA-55-7726-01 4 129793167 129793167 A T JADE1 Missense_Mutation p.Q760L 0.11 tolerated(0.15) benign(0.001) TCGA-55-7726-01 4 16188416 16188416 C T TAPT1 Missense_Mutation p.M278I 0.11 deleterious(0.01) benign(0.284) TCGA-55-7726-01 4 3179079 3179079 G T HTT Missense_Mutation p.L1476F 0.28 probably_damaging(0.979) TCGA-55-7726-01 4 36189162 36189162 G C ARAP2 Missense_Mutation p.S530C 0.33 deleterious(0.01) probably_damaging(0.947) TCGA-55-7726-01 4 5754640 5754640 G A EVC Silent p.E392E 0.27 TCGA-55-7726-01 4 76997033 76997033 G C ART3 Splice_Site 0.06 TCGA-55-7726-01 4 79362436 79362436 G T FRAS1 Nonsense_Mutation p.E1884* 0.46 TCGA-55-7726-01 5 141244682 141244682 G C PCDH1 Nonsense_Mutation p.S405* 0.06 TCGA-55-7726-01 5 34954703 34954703 C T DNAJC21 Missense_Mutation p.R539W 0.08 deleterious(0) possibly_damaging(0.498) TCGA-55-7726-01 5 38950389 38950389 C G RICTOR Missense_Mutation p.K1187N 0.11 tolerated(0.1) benign(0.205) TCGA-55-7726-01 5 95099311 95099311 A G RHOBTB3 Missense_Mutation p.K383R 0.17 tolerated(0.17) benign(0.025) TCGA-55-7726-01 6 108499435 108499435 T C NR2E1 Missense_Mutation p.L211S 0.13 tolerated(0.08) benign(0.025) TCGA-55-7726-01 6 11190841 11190841 C G NEDD9 Missense_Mutation p.E421Q 0.16 deleterious(0.01) probably_damaging(0.955) TCGA-55-7726-01 6 146276084 146276084 A T SHPRH Silent p.P125P 0.31 TCGA-55-7726-01 6 26104175 26104175 C T HIST1H4C 5'UTR 0.18 TCGA-55-7726-01 6 30140170 30140170 C T TRIM15 3'UTR 0.17 TCGA-55-7726-01 7 114268618 114268618 G A FOXP2 Missense_Mutation p.M119I 0.06 deleterious(0) probably_damaging(0.98) TCGA-55-7726-01 7 1997277 1997277 C T MAD1L1 Missense_Mutation p.R528Q 0.11 tolerated(0.37) benign(0.019) TCGA-55-7726-01 7 4917450 4917450 G A RADIL Silent p.A107A 0.10 TCGA-55-7726-01 7 87778374 87778374 T A ADAM22 Splice_Site p.X522_splice 0.09 TCGA-55-7726-01 7 99084102 99084102 C G ZNF789 Missense_Mutation p.S90C 0.24 tolerated(0.19) possibly_damaging(0.628) TCGA-55-7726-01 8 101163574 101163574 G A POLR2K Splice_Site 0.14 TCGA-55-7726-01 8 101163575 101163575 G C POLR2K Intron 0.14 TCGA-55-7726-01 8 101164063 101164063 G A POLR2K Missense_Mutation p.E25K 0.18 tolerated(0.22) benign(0.108) TCGA-55-7726-01 8 125577908 125577908 G C MTSS1 Silent p.V273V 0.23 TCGA-55-7726-01 8 145746499 145746502 TGAG - LRRC14 Frame_Shift_Del p.E374Vfs*15 0.15 TCGA-55-7726-01 9 104433325 104433325 C T GRIN3A Missense_Mutation p.V457I 0.21 tolerated(0.51) benign(0.001) TCGA-55-7726-01 9 120475322 120475322 T G TLR4 Missense_Mutation p.C306G 0.18 deleterious(0.01) probably_damaging(0.975) TCGA-55-7726-01 9 130868088 130868088 C A SLC25A25 Silent p.L276L 0.15 TCGA-55-7726-01 9 131721149 131721149 C G NUP188 Missense_Mutation p.F147L 0.09 deleterious(0.03) probably_damaging(0.994) TCGA-55-7726-01 9 135073778 135073778 C T NTNG2 Silent p.F213F 0.19 TCGA-55-7726-01 9 140077680 140077680 C G ANAPC2 Missense_Mutation p.D395H 0.21 deleterious(0) probably_damaging(0.999) TCGA-55-7726-01 X 109764337 109764337 T C TDGF1P3 RNA 0.29 TCGA-55-7726-01 X 133941655 133941655 T G FAM122C Silent p.G9G 0.13 TCGA-55-7726-01 X 138729002 138729002 C A MCF2 Missense_Mutation p.C29F 0.27 deleterious(0.02) probably_damaging(0.997) TCGA-55-7726-01 X 149901147 149901147 C A MTMR1 Nonsense_Mutation p.S334* 0.14 TCGA-55-7726-01 X 154197823 154197823 C G F8 Silent p.L264L 0.28 TCGA-55-7726-01 X 63406070 63406071 - G AMER1 3'UTR 0.15 TCGA-55-7727-01 10 101458401 101458401 G A ENTPD7 Missense_Mutation p.R374Q 0.19 deleterious(0.04) benign(0.298) TCGA-55-7727-01 10 105194595 105194595 A T PDCD11 Silent p.R1236R 0.13 TCGA-55-7727-01 10 116919926 116919926 G T ATRNL1 Missense_Mutation p.V319L 0.20 tolerated(0.06) possibly_damaging(0.614) TCGA-55-7727-01 10 12209788 12209788 G A NUDT5 Silent p.L191L 0.11 TCGA-55-7727-01 10 124914503 124914503 C T BUB3 Missense_Mutation p.P24S 0.18 deleterious(0.03) benign(0.053) TCGA-55-7727-01 10 129902974 129902974 C T MKI67 Missense_Mutation p.R2377K 0.26 deleterious(0.05) probably_damaging(0.946) TCGA-55-7727-01 10 13672265 13672265 G T PRPF18 Missense_Mutation p.L318F 0.29 tolerated(0.12) benign(0.305) TCGA-55-7727-01 10 18689962 18689962 T C CACNB2 Intron 0.08 TCGA-55-7727-01 10 25885719 25885719 G A GPR158 Splice_Site p.X715_splice 0.14 TCGA-55-7727-01 10 27368065 27368065 C T ANKRD26 Missense_Mutation p.D256N 0.24 deleterious(0.04) probably_damaging(0.966) TCGA-55-7727-01 10 38658918 38658918 A G HSD17B7P2 RNA 0.12 TCGA-55-7727-01 10 38658928 38658928 A T HSD17B7P2 RNA 0.12 TCGA-55-7727-01 10 5468684 5468684 G T NET1 Missense_Mutation p.L65F 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-55-7727-01 10 5468685 5468685 G T NET1 Splice_Site p.X65_splice 0.30 TCGA-55-7727-01 10 55700715 55700715 A G PCDH15 Missense_Mutation p.L1048P 0.37 tolerated(0.26) probably_damaging(0.917) TCGA-55-7727-01 10 55892662 55892662 C A PCDH15 Missense_Mutation p.R630S 0.44 tolerated(0.23) possibly_damaging(0.753) TCGA-55-7727-01 10 64573782 64573782 G A EGR2 Missense_Mutation p.P206S 0.20 tolerated(0.31) possibly_damaging(0.857) TCGA-55-7727-01 10 69961617 69961617 G T MYPN Silent p.L1175L 0.26 TCGA-55-7727-01 10 70056701 70056701 C T PBLD Missense_Mutation p.M42I 0.27 tolerated(0.05) possibly_damaging(0.517) TCGA-55-7727-01 10 71144669 71144669 G A HK1 Missense_Mutation p.A617T 0.05 tolerated(0.13) benign(0.001) TCGA-55-7727-01 10 98412587 98412587 C A PIK3AP1 Missense_Mutation p.V194F 0.27 tolerated(0.07) benign(0.169) TCGA-55-7727-01 11 100211914 100211914 G A CNTN5 Missense_Mutation p.E1003K 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-55-7727-01 11 100999577 100999577 C A PGR Missense_Mutation p.Q75H 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.601) TCGA-55-7727-01 11 113103043 113103043 G C NCAM1 Missense_Mutation p.K513N 0.17 deleterious(0) benign(0.398) TCGA-55-7727-01 11 116633454 116633454 C G BUD13 Missense_Mutation p.R284T 0.12 deleterious(0.04) benign(0.159) TCGA-55-7727-01 11 123601409 123601409 G C ZNF202 Missense_Mutation p.A63G 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-55-7727-01 11 123625181 123625181 G T OR6X1 Missense_Mutation p.P16T 0.14 tolerated(0.16) possibly_damaging(0.566) TCGA-55-7727-01 11 17464292 17464292 G C ABCC8 Silent p.A535A 0.08 TCGA-55-7727-01 11 18731128 18731128 T C IGSF22 Missense_Mutation p.Y935C 0.07 deleterious(0) possibly_damaging(0.903) TCGA-55-7727-01 11 30974034 30974034 A T DCDC1 Silent p.L891L 0.22 TCGA-55-7727-01 11 40136708 40136708 T A LRRC4C Missense_Mutation p.T379S 0.21 tolerated(0.35) benign(0.105) TCGA-55-7727-01 11 55110797 55110797 C A OR4A16 Missense_Mutation p.L41I 0.18 deleterious_low_confidence(0.03) possibly_damaging(0.652) TCGA-55-7727-01 11 55761300 55761300 G T OR5F1 Missense_Mutation p.L268M 0.29 tolerated(0.66) possibly_damaging(0.824) TCGA-55-7727-01 11 62437222 62437222 C A C11orf48 Silent p.V68V 0.05 TCGA-55-7727-01 11 64136103 64136103 G A RPS6KA4 Intron 0.19 TCGA-55-7727-01 11 64850855 64850855 G A CDCA5 Missense_Mutation p.S75L 0.07 deleterious(0.01) benign(0.424) TCGA-55-7727-01 11 65055233 65055233 A T POLA2 Silent p.T351T 0.11 TCGA-55-7727-01 11 77705651 77705651 G C INTS4 Missense_Mutation p.F13L 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-55-7727-01 11 89088169 89088169 G T NOX4 Missense_Mutation p.S393Y 0.29 tolerated(0.49) benign(0.353) TCGA-55-7727-01 11 89885504 89885504 C A NAALAD2 Silent p.I216I 0.15 TCGA-55-7727-01 12 100723039 100723039 G T SCYL2 Missense_Mutation p.G568V 0.41 tolerated(0.59) benign(0.028) TCGA-55-7727-01 12 10150953 10150953 G C CLEC1B Missense_Mutation p.R31G 0.35 deleterious(0) probably_damaging(0.995) TCGA-55-7727-01 12 109614007 109614007 G A ACACB Missense_Mutation p.G459D 0.34 deleterious(0) probably_damaging(0.995) TCGA-55-7727-01 12 122992965 122992965 C A RSRC2 Missense_Mutation p.V279F 0.20 tolerated(0.09) unknown(0) TCGA-55-7727-01 12 15095501 15095501 G A ARHGDIB Silent p.L187L 0.11 TCGA-55-7727-01 12 21919149 21919149 C T KCNJ8 Silent p.L261L 0.44 TCGA-55-7727-01 12 2659746 2659746 G A CACNA1C Intron 0.29 TCGA-55-7727-01 12 49742929 49742929 G T DNAJC22 Missense_Mutation p.G92C 0.28 deleterious(0) probably_damaging(1) TCGA-55-7727-01 12 55688659 55688659 G A OR6C6 Missense_Mutation p.R120C 0.37 deleterious_low_confidence(0.01) benign(0.082) TCGA-55-7727-01 12 57648586 57648586 C A R3HDM2 Silent p.L967L 0.15 TCGA-55-7727-01 12 69050962 69050962 C T RAP1B Missense_Mutation p.L184F 0.35 tolerated(0.15) benign(0.12) TCGA-55-7727-01 12 69962837 69962837 T A FRS2 Missense_Mutation p.D9E 0.26 tolerated(0.54) benign(0.031) TCGA-55-7727-01 12 7249397 7249397 C A C1RL Missense_Mutation p.G352C 0.11 deleterious(0) probably_damaging(1) TCGA-55-7727-01 12 78388619 78388619 T A NAV3 Missense_Mutation p.S236R 0.33 tolerated(0.37) possibly_damaging(0.707) TCGA-55-7727-01 12 9074263 9074263 G C PHC1 Missense_Mutation p.A125P 0.08 deleterious(0) probably_damaging(0.988) TCGA-55-7727-01 13 101717763 101717763 C T NALCN Missense_Mutation p.V1533I 0.30 deleterious(0.03) possibly_damaging(0.893) TCGA-55-7727-01 13 113907459 113907459 C T CUL4A Nonsense_Mutation p.Q568* 0.25 TCGA-55-7727-01 13 33703375 33703375 T C STARD13 Missense_Mutation p.D480G 0.42 tolerated(0.14) benign(0.033) TCGA-55-7727-01 13 35615154 35615154 C A NBEA Missense_Mutation p.H127N 0.35 tolerated(0.18) benign(0.334) TCGA-55-7727-01 13 58207158 58207158 G T PCDH17 Missense_Mutation p.D160Y 0.40 deleterious(0) probably_damaging(1) TCGA-55-7727-01 14 21359990 21359990 C G RNASE3 Missense_Mutation p.R49G 0.05 deleterious(0.02) benign(0.254) TCGA-55-7727-01 14 23344587 23344587 G A LRP10 Missense_Mutation p.E144K 0.16 deleterious(0.04) probably_damaging(0.935) TCGA-55-7727-01 14 24785492 24785492 G T LTB4R Missense_Mutation p.R212L 0.21 deleterious(0.02) possibly_damaging(0.743) TCGA-55-7727-01 14 30194845 30194845 C T PRKD1 Silent p.K100K 0.17 TCGA-55-7727-01 14 31771573 31771573 C G RP11-596D21.1 RNA 0.23 TCGA-55-7727-01 14 51101897 51101897 C G SAV1 3'UTR 0.19 TCGA-55-7727-01 14 70991355 70991355 T C ADAM20 Silent p.P90P 0.17 TCGA-55-7727-01 14 76452127 76452127 G T IFT43 5'UTR 0.13 TCGA-55-7727-01 14 77844488 77844488 G A SAMD15 Missense_Mutation p.E243K 0.23 tolerated(0.18) benign(0.221) TCGA-55-7727-01 15 27777758 27777758 C A GABRG3 Missense_Mutation p.L379M 0.25 tolerated(0.22) possibly_damaging(0.603) TCGA-55-7727-01 15 40855215 40855215 T A C15orf57 Missense_Mutation p.Q9H 0.32 deleterious_low_confidence(0.04) possibly_damaging(0.775) TCGA-55-7727-01 15 41870191 41870191 C T TYRO3 Missense_Mutation p.S797F 0.17 deleterious(0.03) probably_damaging(0.947) TCGA-55-7727-01 15 45803358 45803358 G A SLC30A4 Silent p.F172F 0.05 TCGA-55-7727-01 15 70976696 70976696 G A UACA Missense_Mutation p.A231V 0.29 tolerated(0.15) benign(0.276) TCGA-55-7727-01 16 1261984 1261984 C T CACNA1H Silent p.F1535F 0.05 TCGA-55-7727-01 16 20492237 20492237 A T ACSM2A Silent p.R501R 0.25 TCGA-55-7727-01 16 21213302 21213302 G C ZP2 Missense_Mutation p.L444V 0.10 deleterious(0.01) benign(0.158) TCGA-55-7727-01 16 2282276 2282276 G T E4F1 Missense_Mutation p.A174S 0.49 tolerated(0.7) benign(0.007) TCGA-55-7727-01 16 28128693 28128693 G A XPO6 Silent p.F650F 0.11 TCGA-55-7727-01 16 30723182 30723182 G A SRCAP Missense_Mutation p.E507K 0.12 unknown(0) TCGA-55-7727-01 16 56226258 56226258 C A GNAO1 Silent p.L37L 0.14 TCGA-55-7727-01 16 57073730 57073730 G A NLRC5 Missense_Mutation p.E947K 0.16 deleterious(0.04) benign(0.008) TCGA-55-7727-01 16 633139 633139 G A PIGQ Silent p.T596T 0.11 TCGA-55-7727-01 16 76482781 76482781 C A CNTNAP4 Missense_Mutation p.T262K 0.15 deleterious(0) probably_damaging(0.978) TCGA-55-7727-01 16 80577179 80577179 G T DYNLRB2 Missense_Mutation p.V4L 0.24 deleterious(0) benign(0.147) TCGA-55-7727-01 16 81183335 81183335 C A PKD1L2 RNA 0.22 TCGA-55-7727-01 16 81214828 81214828 G C PKD1L2 5'UTR 0.18 TCGA-55-7727-01 16 90130098 90130098 C A PRDM7 Missense_Mutation p.D144Y 0.46 tolerated(0.16) benign(0.261) TCGA-55-7727-01 17 1686381 1686381 T C SMYD4 Missense_Mutation p.S737G 0.33 deleterious(0) probably_damaging(0.999) TCGA-55-7727-01 17 21217498 21217498 G A MAP2K3 Missense_Mutation p.D334N 0.14 tolerated(0.07) benign(0.134) TCGA-55-7727-01 17 21730906 21730906 G C UBBP4 Missense_Mutation p.V70L 0.30 tolerated(0.05) benign(0.06) TCGA-55-7727-01 17 40070111 40070111 T C ACLY Missense_Mutation p.I6V 0.10 tolerated(0.06) benign(0.011) TCGA-55-7727-01 17 42228409 42228409 A G C17orf53 Silent p.T435T 0.23 TCGA-55-7727-01 17 42427843 42427843 C T GRN Missense_Mutation p.P166S 0.10 deleterious(0) probably_damaging(0.982) TCGA-55-7727-01 17 51902313 51902313 G T KIF2B Missense_Mutation p.R640L 0.42 deleterious(0) benign(0.024) TCGA-55-7727-01 17 56621498 56621498 C G C17orf47 Missense_Mutation p.R17T 0.12 deleterious(0) possibly_damaging(0.765) TCGA-55-7727-01 17 59972721 59972721 C G INTS2 Missense_Mutation p.L514F 0.18 deleterious(0.02) probably_damaging(0.993) TCGA-55-7727-01 17 7579533 7579533 G A TP53 Nonsense_Mutation p.Q52* 0.39 TCGA-55-7727-01 17 79246348 79246348 C T SLC38A10 Missense_Mutation p.G331E 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-55-7727-01 17 80041265 80041265 C A FASN Missense_Mutation p.G1793V 0.32 deleterious(0) probably_damaging(1) TCGA-55-7727-01 18 10681669 10681669 A - PIEZO2 Frame_Shift_Del p.S2477Lfs*18 0.22 TCGA-55-7727-01 18 14848862 14848862 C T ANKRD30B Missense_Mutation p.A991V 0.40 deleterious(0.05) benign(0.034) TCGA-55-7727-01 18 23772386 23772386 G A PSMA8 3'UTR 0.31 TCGA-55-7727-01 18 30873179 30873179 C T CCDC178 Missense_Mutation p.E374K 0.26 deleterious(0.02) benign(0.26) TCGA-55-7727-01 18 42530277 42530277 G T SETBP1 Missense_Mutation p.E324D 0.24 tolerated_low_confidence(0.3) benign(0.009) TCGA-55-7727-01 18 47809014 47809014 C T CXXC1 Silent p.T644T 0.12 TCGA-55-7727-01 18 60985347 60985347 G A BCL2 Silent p.L185L 0.20 TCGA-55-7727-01 18 61463530 61463530 G A SERPINB7 Missense_Mutation p.D123N 0.27 tolerated(0.75) benign(0.003) TCGA-55-7727-01 18 76755179 76755179 T C SALL3 Missense_Mutation p.M1063T 0.28 tolerated(0.9) benign(0.007) TCGA-55-7727-01 19 11665067 11665067 C T ELOF1 Silent p.E32E 0.22 TCGA-55-7727-01 19 13930173 13930173 G T ZSWIM4 Missense_Mutation p.G526C 0.16 deleterious(0) unknown(0) TCGA-55-7727-01 19 15483984 15483984 C T AKAP8 Missense_Mutation p.R180Q 0.09 deleterious(0.01) possibly_damaging(0.732) TCGA-55-7727-01 19 1612270 1612270 C A TCF3 Intron 0.22 TCGA-55-7727-01 19 17644449 17644449 G T FAM129C Silent p.T153T 0.28 TCGA-55-7727-01 19 17650003 17650003 G T FAM129C Missense_Mutation p.A245S 0.45 deleterious(0) probably_damaging(0.947) TCGA-55-7727-01 19 19349097 19349097 C A NCAN Missense_Mutation p.Q1096K 0.37 deleterious(0.02) benign(0.213) TCGA-55-7727-01 19 2191016 2191016 G T DOT1L Missense_Mutation p.K90N 0.25 deleterious(0.01) probably_damaging(0.987) TCGA-55-7727-01 19 36398370 36398370 A T TYROBP Silent p.P69P 0.19 TCGA-55-7727-01 19 42224083 42224083 C T CEACAM5 Missense_Mutation p.S576L 0.08 tolerated(0.09) benign(0.006) TCGA-55-7727-01 19 43262416 43262416 G A PSG8 Silent p.P149P 0.40 TCGA-55-7727-01 19 43262417 43262417 G A PSG8 Missense_Mutation p.P149L 0.40 deleterious(0) probably_damaging(0.999) TCGA-55-7727-01 19 44934284 44934284 C G ZNF229 Missense_Mutation p.W224C 0.60 tolerated(0.1) benign(0.003) TCGA-55-7727-01 19 49253877 49253877 C A FUT1 Missense_Mutation p.R221L 0.39 deleterious(0) probably_damaging(0.949) TCGA-55-7727-01 19 50463829 50463829 G A SIGLEC11 Missense_Mutation p.A147V 0.16 tolerated(0.3) benign(0.003) TCGA-55-7727-01 19 9061942 9061942 G C MUC16 Missense_Mutation p.P8502A 0.17 unknown(0) TCGA-55-7727-01 19 9069683 9069683 C T MUC16 Silent p.V5921V 0.30 TCGA-55-7727-01 1 147380681 147380681 C A GJA8 Missense_Mutation p.T200K 0.18 deleterious(0) probably_damaging(1) TCGA-55-7727-01 1 149884960 149884960 G A SV2A Nonsense_Mutation p.R145* 0.06 TCGA-55-7727-01 1 158435910 158435910 C A OR10K1 Missense_Mutation p.L187M 0.44 deleterious(0.01) benign(0.411) TCGA-55-7727-01 1 165514004 165514004 C T LRRC52 Silent p.L157L 0.09 TCGA-55-7727-01 1 167096851 167096853 CTG AT DUSP27 Frame_Shift_Del p.A828Dfs*6 0.17 TCGA-55-7727-01 1 182787814 182787814 G T NPL Missense_Mutation p.G199V 0.27 deleterious(0) probably_damaging(0.999) TCGA-55-7727-01 1 182827742 182827742 C G DHX9 Missense_Mutation p.I289M 0.11 tolerated(0.1) benign(0.129) TCGA-55-7727-01 1 186147872 186147872 C T HMCN1 Missense_Mutation p.S5423F 0.05 benign(0) TCGA-55-7727-01 1 202287921 202287921 C T LGR6 Silent p.F830F 0.10 TCGA-55-7727-01 1 202843336 202843336 G C RABIF 3'Flank 0.23 TCGA-55-7727-01 1 208224761 208224761 T C PLXNA2 Missense_Mutation p.M1001V 0.11 tolerated(0.31) benign(0.002) TCGA-55-7727-01 1 216370038 216370038 C T USH2A Missense_Mutation p.V1370I 0.31 benign(0.239) TCGA-55-7727-01 1 228401921 228401921 C T OBSCN Silent p.G435G 0.08 TCGA-55-7727-01 1 231155691 231155691 C T FAM89A Missense_Mutation p.R158K 0.24 tolerated(0.48) benign(0.037) TCGA-55-7727-01 1 232650057 232650057 T A SIPA1L2 Missense_Mutation p.E343D 0.10 deleterious(0.03) probably_damaging(0.992) TCGA-55-7727-01 1 237777588 237777588 G A RYR2 Missense_Mutation p.M1720I 0.16 possibly_damaging(0.795) TCGA-55-7727-01 1 247695307 247695307 C A OR2C3 Silent p.L169L 0.28 TCGA-55-7727-01 1 247769700 247769700 G A OR2G3 Silent p.G271G 0.46 TCGA-55-7727-01 1 247921358 247921358 C T OR1C1 Silent p.V117V 0.10 TCGA-55-7727-01 1 248551522 248551522 G T OR2T6 Missense_Mutation p.A205S 0.37 deleterious(0) benign(0.158) TCGA-55-7727-01 1 51829575 51829575 C G EPS15 Missense_Mutation p.K774N 0.10 deleterious(0) probably_damaging(0.994) TCGA-55-7727-01 1 57537266 57537266 C T DAB1 Missense_Mutation p.E163K 0.23 tolerated(0.06) benign(0.051) TCGA-55-7727-01 1 6206324 6206324 G A CHD5 Missense_Mutation p.R584C 0.28 deleterious(0.01) probably_damaging(0.985) TCGA-55-7727-01 1 70493864 70493864 A G LRRC7 Missense_Mutation p.N564S 0.06 deleterious(0.01) probably_damaging(0.986) TCGA-55-7727-01 1 70505431 70505431 G A LRRC7 Nonsense_Mutation p.W1270* 0.11 TCGA-55-7727-01 1 75036931 75036931 G T C1orf173 Missense_Mutation p.P1488Q 0.23 tolerated(0.13) benign(0.057) TCGA-55-7727-01 1 7880542 7880542 C T PER3 Missense_Mutation p.P592L 0.25 tolerated(0.2) benign(0.017) TCGA-55-7727-01 1 78959092 78959092 A G PTGFR Missense_Mutation p.I222V 0.35 tolerated(0.45) benign(0.004) TCGA-55-7727-01 1 87031096 87031096 G A CLCA4 Missense_Mutation p.E233K 0.05 tolerated(0.67) possibly_damaging(0.752) TCGA-55-7727-01 1 90179620 90179620 C T LRRC8C Silent p.S497S 0.25 TCGA-55-7727-01 1 93687224 93687224 C T CCDC18 Missense_Mutation p.S727F 0.26 tolerated(0.07) benign(0.093) TCGA-55-7727-01 1 99771530 99771530 G A LPPR4 Missense_Mutation p.R419Q 0.09 deleterious(0) probably_damaging(0.997) TCGA-55-7727-01 20 21327175 21327175 G A XRN2 Missense_Mutation p.R551K 0.20 tolerated(0.52) benign(0.036) TCGA-55-7727-01 20 3127632 3127632 C T FASTKD5 Missense_Mutation p.M695I 0.08 tolerated(0.07) benign(0) TCGA-55-7727-01 20 3571954 3571954 G T ATRN Splice_Site p.X1108_splice 0.14 TCGA-55-7727-01 20 3730746 3730746 C T HSPA12B Silent p.F391F 0.20 TCGA-55-7727-01 20 43959123 43959123 C T SDC4 Missense_Mutation p.E110K 0.34 deleterious(0.02) probably_damaging(0.996) TCGA-55-7727-01 20 44671916 44671916 C A SLC12A5 Silent p.T420T 0.33 TCGA-55-7727-01 20 62737562 62737562 C T NPBWR2 Nonsense_Mutation p.W208* 0.25 TCGA-55-7727-01 20 9496746 9496746 C A LAMP5 Missense_Mutation p.R113S 0.28 tolerated(0.37) benign(0.004) TCGA-55-7727-01 20 9546591 9546591 C T PAK7 Silent p.V477V 0.09 TCGA-55-7727-01 21 10862882 10862882 C A IGHV1OR21-1 Missense_Mutation p.H60N 0.16 deleterious(0.01) benign(0.001) TCGA-55-7727-01 21 11039084 11039084 T A BAGE2 RNA 0.09 TCGA-55-7727-01 21 18919367 18919367 C T CXADR Silent p.I22I 0.07 TCGA-55-7727-01 21 38380471 38380471 G A RIPPLY3 Missense_Mutation p.R40Q 0.10 deleterious(0) possibly_damaging(0.776) TCGA-55-7727-01 21 43529807 43529807 A T UMODL1 Missense_Mutation p.E552V 0.38 deleterious(0.04) benign(0.234) TCGA-55-7727-01 21 44524456 44524456 G A U2AF1 Missense_Mutation p.S34F 0.16 deleterious(0) possibly_damaging(0.835) TCGA-55-7727-01 21 44589361 44589361 C T CRYAA Missense_Mutation p.S51F 0.05 tolerated(0.22) benign(0.392) TCGA-55-7727-01 22 16266928 16266928 C A POTEH Splice_Site p.X507_splice 0.15 TCGA-55-7727-01 22 21336852 21336852 G T LZTR1 Silent p.V64V 0.13 TCGA-55-7727-01 22 22712542 22712542 C G IGLV1-47 Missense_Mutation p.I95M 0.39 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-55-7727-01 22 23438057 23438057 G T GNAZ Missense_Mutation p.G59C 0.10 deleterious(0.02) possibly_damaging(0.889) TCGA-55-7727-01 22 32647853 32647853 G T SLC5A4 Silent p.A72A 0.58 TCGA-55-7727-01 22 33960945 33960945 C A LARGE Missense_Mutation p.V226F 0.31 deleterious(0.02) benign(0.424) TCGA-55-7727-01 2 113788652 113788652 C A IL36B Missense_Mutation p.A32S 0.27 tolerated_low_confidence(0.06) benign(0.067) TCGA-55-7727-01 2 128479467 128479467 T C WDR33 Silent p.Q538Q 0.34 TCGA-55-7727-01 2 179422610 179422610 G C TTN Silent p.L29157L 0.09 TCGA-55-7727-01 2 17962335 17962335 C T GEN1 Missense_Mutation p.S619L 0.24 tolerated(0.4) benign(0.001) TCGA-55-7727-01 2 179736233 179736233 G A CCDC141 Missense_Mutation p.S709F 0.07 tolerated(0.26) possibly_damaging(0.851) TCGA-55-7727-01 2 185803549 185803549 A T ZNF804A Silent p.S1142S 0.30 TCGA-55-7727-01 2 190445210 190445210 C G SLC40A1 5'UTR 0.08 TCGA-55-7727-01 2 198570892 198570892 G T MARS2 Missense_Mutation p.V255L 0.38 deleterious(0.01) probably_damaging(0.919) TCGA-55-7727-01 2 202900672 202900672 C T FZD7 Silent p.F434F 0.08 TCGA-55-7727-01 2 216965204 216965204 A G TMEM169 Missense_Mutation p.N278S 0.27 tolerated(0.5) benign(0.204) TCGA-55-7727-01 2 242690756 242690756 G A D2HGDH Missense_Mutation p.G365S 0.10 tolerated(0.1) benign(0.064) TCGA-55-7727-01 2 24929670 24929670 C G NCOA1 Nonsense_Mutation p.S444* 0.11 TCGA-55-7727-01 2 54081891 54081891 C T GPR75 Translation_Start_Site p.M1? 0.14 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-55-7727-01 2 74489280 74489280 T C SLC4A5 Silent p.A265A 0.25 TCGA-55-7727-01 2 96934240 96934240 G A CIAO1 Missense_Mutation p.E179K 0.05 deleterious(0) probably_damaging(0.992) TCGA-55-7727-01 3 101311480 101311480 A G PCNP Silent p.P140P 0.32 TCGA-55-7727-01 3 107096474 107096474 A T CCDC54 Missense_Mutation p.R14W 0.20 deleterious(0) possibly_damaging(0.614) TCGA-55-7727-01 3 129291746 129291746 G C PLXND1 Nonsense_Mutation p.S959* 0.10 TCGA-55-7727-01 3 133467266 133467266 G T TF Silent p.L18L 0.41 TCGA-55-7727-01 3 138023810 138023810 G T NME9 Silent p.L171L 0.07 TCGA-55-7727-01 3 142083991 142083991 C T XRN1 Missense_Mutation p.D1098N 0.09 deleterious(0.01) possibly_damaging(0.686) TCGA-55-7727-01 3 14768449 14768449 G C C3orf20 Missense_Mutation p.K536N 0.10 deleterious(0.03) probably_damaging(0.979) TCGA-55-7727-01 3 160804158 160804158 A G B3GALNT1 Silent p.L129L 0.09 TCGA-55-7727-01 3 169501310 169501310 C T MYNN Missense_Mutation p.S482F 0.23 deleterious(0.01) probably_damaging(0.981) TCGA-55-7727-01 3 184024551 184024551 C T PSMD2 Silent p.L655L 0.29 TCGA-55-7727-01 3 184100663 184100663 G C CHRD Missense_Mutation p.L334F 0.27 deleterious(0.01) probably_damaging(0.958) TCGA-55-7727-01 3 186793407 186793407 C G ST6GAL1 Missense_Mutation p.S346C 0.23 probably_damaging(0.999) TCGA-55-7727-01 3 32932777 32932777 G A TRIM71 Missense_Mutation p.G694E 0.16 deleterious(0) probably_damaging(1) TCGA-55-7727-01 3 38595897 38595897 C T SCN5A Silent p.K1562K 0.09 TCGA-55-7727-01 3 45868857 45868857 C G LZTFL1 Missense_Mutation p.R291T 0.09 deleterious(0.03) benign(0.339) TCGA-55-7727-01 3 49395018 49395018 C T GPX1 Missense_Mutation p.D139N 0.33 tolerated(0.07) benign(0.02) TCGA-55-7727-01 3 50232211 50232211 C A GNAT1 Nonsense_Mutation p.Y292* 0.10 TCGA-55-7727-01 3 50385968 50385968 G C NPRL2 Missense_Mutation p.S237C 0.09 deleterious(0) probably_damaging(0.939) TCGA-55-7727-01 3 52726885 52726885 C T GNL3 Intron 0.09 TCGA-55-7727-01 4 13605004 13605023 AATCTGCTGTGCAAGTTCTC - BOD1L1 Frame_Shift_Del p.L1167Ffs*9 0.14 TCGA-55-7727-01 4 154780 154780 G T ZNF718 RNA 0.22 TCGA-55-7727-01 4 170477147 170477147 G A NEK1 Nonsense_Mutation p.Q456* 0.18 TCGA-55-7727-01 4 25005381 25005381 G A LGI2 Missense_Mutation p.R444W 0.10 deleterious(0) probably_damaging(0.958) TCGA-55-7727-01 4 46067491 46067491 C G GABRG1 Missense_Mutation p.W144C 0.33 deleterious(0) possibly_damaging(0.853) TCGA-55-7727-01 4 47765548 47765548 C A CORIN Silent p.T155T 0.16 TCGA-55-7727-01 4 55161414 55161414 A G PDGFRA Missense_Mutation p.D1082G 0.11 tolerated_low_confidence(0.06) probably_damaging(0.929) TCGA-55-7727-01 4 66509083 66509083 C G EPHA5 Missense_Mutation p.G82R 0.24 deleterious(0) probably_damaging(1) TCGA-55-7727-01 4 69362523 69362523 G A TMPRSS11E 3'UTR 0.16 TCGA-55-7727-01 4 96761281 96761281 C A PDHA2 5'UTR 0.29 TCGA-55-7727-01 5 13809157 13809157 C A DNAH5 Missense_Mutation p.G2583V 0.11 probably_damaging(0.988) TCGA-55-7727-01 5 140216127 140216127 C T PCDHA7 Missense_Mutation p.A720V 0.38 tolerated_low_confidence(0.19) benign(0.043) TCGA-55-7727-01 5 140531624 140531624 C A PCDHB6 Missense_Mutation p.Q596K 0.14 deleterious(0) possibly_damaging(0.677) TCGA-55-7727-01 5 140754648 140754648 T A PCDHGA6 Missense_Mutation p.V333D 0.31 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-55-7727-01 5 140812657 140812657 C G PCDHGA12 Missense_Mutation p.D777E 0.07 deleterious_low_confidence(0) possibly_damaging(0.858) TCGA-55-7727-01 5 149513572 149513572 C A PDGFRB Splice_Site p.X211_splice 0.14 TCGA-55-7727-01 5 156589685 156589685 C A FAM71B Missense_Mutation p.A531S 0.12 tolerated(0.24) benign(0.001) TCGA-55-7727-01 5 156670710 156670710 G T ITK Missense_Mutation p.G380C 0.21 deleterious(0) probably_damaging(1) TCGA-55-7727-01 5 156712415 156712415 A C CYFIP2 Missense_Mutation p.D15A 0.29 deleterious(0.02) benign(0.051) TCGA-55-7727-01 5 176300975 176300975 C G UNC5A Missense_Mutation p.S298C 0.16 deleterious(0.01) possibly_damaging(0.789) TCGA-55-7727-01 5 178140563 178140563 C A ZNF354A Nonsense_Mutation p.G106* 0.14 TCGA-55-7727-01 5 24487756 24487756 G T CDH10 3'UTR 0.42 TCGA-55-7727-01 5 26906068 26906068 T A CDH9 Missense_Mutation p.S271C 0.24 deleterious(0.01) benign(0.314) TCGA-55-7727-01 5 41004595 41004595 G T MROH2B Silent p.I1349I 0.60 TCGA-55-7727-01 5 41176734 41176734 G C C6 Silent p.V337V 0.08 TCGA-55-7727-01 5 5239860 5239860 C G ADAMTS16 Missense_Mutation p.S782C 0.06 deleterious(0.04) probably_damaging(0.957) TCGA-55-7727-01 5 7863072 7863072 A T FASTKD3 Missense_Mutation p.F521L 0.06 deleterious(0.03) possibly_damaging(0.656) TCGA-55-7727-01 5 88018598 88018598 C A MEF2C Missense_Mutation p.E425D 0.24 tolerated(0.42) benign(0.007) TCGA-55-7727-01 6 10902949 10902949 G A SYCP2L Missense_Mutation p.G169E 0.32 deleterious(0) probably_damaging(1) TCGA-55-7727-01 6 117113821 117113821 C G GPRC6A Missense_Mutation p.M755I 0.29 deleterious(0) probably_damaging(1) TCGA-55-7727-01 6 151130291 151130291 C T PLEKHG1 Silent p.Y321Y 0.13 TCGA-55-7727-01 6 15511564 15511564 G A JARID2 Missense_Mutation p.D962N 0.11 tolerated(0.25) benign(0.428) TCGA-55-7727-01 6 158358492 158358492 G A SNX9 Missense_Mutation p.M490I 0.08 deleterious(0.02) probably_damaging(0.994) TCGA-55-7727-01 6 167549755 167549755 G T CCR6 Missense_Mutation p.D13Y 0.42 tolerated(1) benign(0.002) TCGA-55-7727-01 6 169620303 169620303 G A THBS2 Silent p.Y1167Y 0.50 TCGA-55-7727-01 6 30078327 30078327 C T TRIM31 Silent p.G214G 0.08 TCGA-55-7727-01 6 31855433 31855433 C T EHMT2 Silent p.R644R 0.05 TCGA-55-7727-01 6 46659781 46659781 A T TDRD6 Nonsense_Mutation p.K1306* 0.40 TCGA-55-7727-01 6 47675035 47675035 C A GPR115 Silent p.S18S 0.24 TCGA-55-7727-01 6 70993463 70993463 G T COL9A1 Missense_Mutation p.H253N 0.26 benign(0.041) TCGA-55-7727-01 6 7568679 7568679 G A DSP Missense_Mutation p.E426K 0.05 probably_damaging(0.988) TCGA-55-7727-01 6 80383466 80383466 C A SH3BGRL2 Missense_Mutation p.Q61K 0.09 tolerated(0.44) benign(0.057) TCGA-55-7727-01 7 100373314 100373314 C - ZAN Frame_Shift_Del p.A2018Pfs*35 0.08 TCGA-55-7727-01 7 100682585 100682585 G A MUC17 Missense_Mutation p.E2630K 0.11 benign(0.186) TCGA-55-7727-01 7 100684763 100684763 G A MUC17 Missense_Mutation p.E3356K 0.04 benign(0.186) TCGA-55-7727-01 7 101926396 101926396 C T SH2B2 5'Flank 0.14 TCGA-55-7727-01 7 126410032 126410032 G A GRM8 Missense_Mutation p.A415V 0.12 deleterious(0) possibly_damaging(0.903) TCGA-55-7727-01 7 134216764 134216764 A G AKR1B10 Silent p.P113P 0.05 TCGA-55-7727-01 7 137172408 137172408 C A DGKI Missense_Mutation p.R777L 0.27 tolerated(0.13) probably_damaging(0.998) TCGA-55-7727-01 7 142232034 142232034 G A TRBV10-1 5'UTR 0.10 TCGA-55-7727-01 7 143096797 143096797 C A EPHA1 Missense_Mutation p.R261L 0.22 deleterious(0.04) benign(0.131) TCGA-55-7727-01 7 143175698 143175698 C G TAS2R41 Missense_Mutation p.L245V 0.10 tolerated(0.33) benign(0.219) TCGA-55-7727-01 7 149482754 149482754 G T SSPO RNA 0.27 TCGA-55-7727-01 7 149557595 149557595 A G ZNF862 Missense_Mutation p.E449G 0.30 tolerated(0.1) benign(0.006) TCGA-55-7727-01 7 150643967 150643967 G C KCNH2 Missense_Mutation p.Q1110E 0.09 tolerated_low_confidence(0.16) benign(0.176) TCGA-55-7727-01 7 16900125 16900125 T A AGR3 Silent p.L150L 0.25 TCGA-55-7727-01 7 17369593 17369593 G C AHR Missense_Mutation p.Q156H 0.24 deleterious(0.01) possibly_damaging(0.896) TCGA-55-7727-01 7 35289601 35289601 A T TBX20 Missense_Mutation p.H114Q 0.20 deleterious(0) probably_damaging(0.941) TCGA-55-7727-01 7 36396957 36396957 G A KIAA0895 Missense_Mutation p.P141S 0.47 tolerated_low_confidence(0.32) benign(0.014) TCGA-55-7727-01 7 49815691 49815691 C A VWC2 Missense_Mutation p.F220L 0.23 tolerated(0.08) probably_damaging(0.992) TCGA-55-7727-01 7 49815692 49815692 C A VWC2 Silent p.R221R 0.23 TCGA-55-7727-01 8 10470721 10470721 G A RP1L1 Missense_Mutation p.T296M 0.21 possibly_damaging(0.45) TCGA-55-7727-01 8 124663831 124663831 C A KLHL38 Missense_Mutation p.V446L 0.38 deleterious(0.02) benign(0.011) TCGA-55-7727-01 8 125520867 125520867 C T TATDN1 Missense_Mutation p.R151Q 0.20 deleterious(0) probably_damaging(1) TCGA-55-7727-01 8 125562071 125562071 G A NDUFB9 Missense_Mutation p.E160K 0.14 tolerated_low_confidence(0.11) benign(0.005) TCGA-55-7727-01 8 125565305 125565305 C T MTSS1 Silent p.L732L 0.07 TCGA-55-7727-01 8 125565318 125565318 C T MTSS1 Missense_Mutation p.G728E 0.06 tolerated(0.18) probably_damaging(1) TCGA-55-7727-01 8 131072883 131072883 T C ASAP1 Missense_Mutation p.N1045S 0.37 tolerated(0.14) benign(0.092) TCGA-55-7727-01 8 131130783 131130783 G C ASAP1 Silent p.V582V 0.48 TCGA-55-7727-01 8 39695722 39695722 C T ADAM2 5'UTR 0.34 TCGA-55-7727-01 8 41584849 41584849 C A ANK1 Silent p.L148L 0.23 TCGA-55-7727-01 8 42841831 42841831 G A HOOK3 Silent p.K475K 0.10 TCGA-55-7727-01 8 49832849 49832849 G A SNAI2 Silent p.S77S 0.08 TCGA-55-7727-01 8 52320897 52320897 C A PXDNL Missense_Mutation p.G1096V 0.25 deleterious(0.02) probably_damaging(1) TCGA-55-7727-01 8 62371093 62371093 G T CLVS1 Silent p.L323L 0.47 TCGA-55-7727-01 8 94746552 94746552 T G RBM12B Missense_Mutation p.E696A 0.24 deleterious_low_confidence(0.05) benign(0.4) TCGA-55-7727-01 8 94807657 94807657 G T TMEM67 Silent p.V565V 0.28 TCGA-55-7727-01 8 97270789 97270789 G A MTERFD1 Nonsense_Mutation p.Q44* 0.07 TCGA-55-7727-01 9 119738458 119738458 G T ASTN2 Silent p.P511P 0.12 TCGA-55-7727-01 9 119770395 119770395 C T ASTN2 Missense_Mutation p.E472K 0.07 deleterious(0) unknown(0) TCGA-55-7727-01 9 125377476 125377476 C A OR1Q1 Missense_Mutation p.L154I 0.25 tolerated(0.08) benign(0.357) TCGA-55-7727-01 9 13109986 13109986 C A MPDZ Silent p.G1940G 0.25 TCGA-55-7727-01 9 135211746 135211746 C A SETX Missense_Mutation p.G219C 0.29 deleterious(0.01) probably_damaging(1) TCGA-55-7727-01 9 139107068 139107068 G C QSOX2 Missense_Mutation p.S431C 0.12 deleterious(0) probably_damaging(0.994) TCGA-55-7727-01 9 140811715 140811715 C G CACNA1B Missense_Mutation p.F266L 0.17 tolerated(0.08) benign(0.056) TCGA-55-7727-01 9 18777150 18777150 A C ADAMTSL1 Silent p.R975R 0.08 TCGA-55-7727-01 9 18929019 18929019 C T FAM154A Silent p.E152E 0.14 TCGA-55-7727-01 9 19050308 19050308 C T RRAGA Silent p.Y217Y 0.10 TCGA-55-7727-01 9 33385097 33385097 G A AQP7 Missense_Mutation p.S312F 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.828) TCGA-55-7727-01 9 35799660 35799660 C T NPR2 Nonsense_Mutation p.Q307* 0.17 TCGA-55-7727-01 9 5044417 5044417 G T JAK2 Missense_Mutation p.R122L 0.23 deleterious(0) benign(0.015) TCGA-55-7727-01 9 8341727 8341727 C G PTPRD Missense_Mutation p.G1638A 0.26 deleterious(0.03) probably_damaging(0.972) TCGA-55-7727-01 9 84608347 84608347 C A SPATA31D1 Missense_Mutation p.P988T 0.23 deleterious(0.02) probably_damaging(0.958) TCGA-55-7727-01 9 98685569 98685569 C G ERCC6L2 Missense_Mutation p.Q492E 0.07 tolerated(0.43) benign(0.001) TCGA-55-7727-01 X 101818923 101818923 T A NXF4 RNA 0.27 TCGA-55-7727-01 X 120182249 120182249 T C GLUD2 Silent p.A237A 0.52 TCGA-55-7727-01 X 140996370 140996370 C T MAGEC1 Silent p.P1060P 0.07 TCGA-55-7727-01 X 151821220 151821220 C A GABRQ Missense_Mutation p.Q459K 0.20 deleterious(0) probably_damaging(0.999) TCGA-55-7727-01 X 1584266 1584266 G T P2RY8 3'UTR 0.50 TCGA-55-7727-01 X 16717203 16717203 G C CTPS2 Silent p.V60V 0.57 TCGA-55-7727-01 X 47039904 47039904 A T RBM10 Missense_Mutation p.Q416L 0.36 deleterious(0) probably_damaging(0.932) TCGA-55-7727-01 X 47426121 47426121 C G ARAF Missense_Mutation p.S214C 0.55 deleterious(0) possibly_damaging(0.786) TCGA-55-7727-01 X 47426122 47426122 C T ARAF Silent p.S214S 0.55 TCGA-55-7727-01 X 55513511 55513511 A G USP51 Missense_Mutation p.M621T 0.50 deleterious(0) possibly_damaging(0.855) TCGA-55-7727-01 X 86888884 86888884 C A KLHL4 Missense_Mutation p.T562K 0.31 deleterious(0.03) possibly_damaging(0.69) TCGA-55-7727-01 X 88008985 88008985 C A CPXCR1 Missense_Mutation p.H190Q 0.78 tolerated(0.66) benign(0.018) TCGA-55-7727-01 X 99662622 99662622 G T PCDH19 Missense_Mutation p.S325Y 0.08 deleterious(0) probably_damaging(0.968) TCGA-55-7728-01 10 108337168 108337168 G T SORCS1 Intron 0.14 TCGA-55-7728-01 10 16990602 16990602 C T CUBN Missense_Mutation p.R1695H 0.09 deleterious(0.02) possibly_damaging(0.537) TCGA-55-7728-01 10 32099639 32099639 T A ARHGAP12 Missense_Mutation p.Q663L 0.21 deleterious(0.03) benign(0.015) TCGA-55-7728-01 10 6540402 6540402 G C PRKCQ Missense_Mutation p.F166L 0.16 deleterious(0.02) probably_damaging(0.986) TCGA-55-7728-01 11 21250897 21250897 C T NELL1 Silent p.S482S 0.21 TCGA-55-7728-01 11 381703 381703 C T B4GALNT4 Nonsense_Mutation p.R1011* 0.07 TCGA-55-7728-01 11 66258810 66258810 G C DPP3 Missense_Mutation p.A252P 0.15 deleterious(0.01) possibly_damaging(0.784) TCGA-55-7728-01 11 69933926 69933926 G T ANO1 Silent p.R59R 0.19 TCGA-55-7728-01 11 70279299 70279299 C T CTTN Silent p.Y416Y 0.15 TCGA-55-7728-01 11 84028119 84028119 C T DLG2 Intron 0.17 TCGA-55-7728-01 11 92533638 92533638 C T FAT3 Missense_Mutation p.L2487F 0.23 benign(0.22) TCGA-55-7728-01 12 108127946 108127946 C A PRDM4 3'UTR 0.19 TCGA-55-7728-01 12 120765547 120765547 G T PLA2G1B Missense_Mutation p.L4I 0.20 tolerated(0.1) benign(0.034) TCGA-55-7728-01 12 12279682 12279682 C A LRP6 Missense_Mutation p.A1419S 0.20 tolerated(0.32) benign(0.004) TCGA-55-7728-01 12 133384781 133384781 C A GOLGA3 Missense_Mutation p.D292Y 0.19 deleterious_low_confidence(0) possibly_damaging(0.593) TCGA-55-7728-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.44 deleterious(0) possibly_damaging(0.479) TCGA-55-7728-01 12 44198367 44198367 C T TWF1 Missense_Mutation p.D12N 0.10 deleterious(0.04) benign(0.002) TCGA-55-7728-01 12 49434727 49434727 G A KMT2D Missense_Mutation p.P2276S 0.42 benign(0.113) TCGA-55-7728-01 12 49951615 49951615 C A KCNH3 Missense_Mutation p.P1044H 0.13 deleterious_low_confidence(0.01) benign(0.133) TCGA-55-7728-01 12 56498463 56498463 G A PA2G4 5'UTR 0.05 TCGA-55-7728-01 13 25023877 25023877 G A PARP4 Silent p.S1031S 0.17 TCGA-55-7728-01 14 20404299 20404299 C A OR4K1 Missense_Mutation p.S158R 0.29 deleterious(0) possibly_damaging(0.776) TCGA-55-7728-01 14 74973502 74973502 G C LTBP2 Missense_Mutation p.T1311S 0.15 tolerated(0.11) benign(0.072) TCGA-55-7728-01 14 79270063 79270063 C A NRXN3 Silent p.S342S 0.23 TCGA-55-7728-01 14 94139798 94139798 T A UNC79 Silent p.V2108V 0.15 TCGA-55-7728-01 15 24924367 24924367 C A NPAP1 Missense_Mutation p.A1118D 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.683) TCGA-55-7728-01 15 34529746 34529746 C A SLC12A6 Missense_Mutation p.W936C 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-7728-01 15 69696075 69696075 A T PAQR5 Missense_Mutation p.I303F 0.18 tolerated(0.1) benign(0.002) TCGA-55-7728-01 15 99645362 99645362 A T SYNM 5'UTR 0.56 TCGA-55-7728-01 16 15204355 15204355 C A RP11-1186N24.5 RNA 0.17 TCGA-55-7728-01 16 19088645 19088645 G A COQ7 Silent p.R175R 0.28 TCGA-55-7728-01 16 28619895 28619895 T A SULT1A1 Missense_Mutation p.M60L 0.22 tolerated(0.36) benign(0.044) TCGA-55-7728-01 16 30532924 30532924 G C ITGAL Missense_Mutation p.D1151H 0.18 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-55-7728-01 16 4833675 4833675 T A SEPT12 Missense_Mutation p.E202V 0.22 deleterious(0) probably_damaging(0.976) TCGA-55-7728-01 17 33348651 33348651 C A RFFL Missense_Mutation p.R110S 0.17 deleterious(0) probably_damaging(0.998) TCGA-55-7728-01 17 40021265 40021265 T A KLHL11 Missense_Mutation p.E120V 0.14 tolerated(0.06) benign(0.082) TCGA-55-7728-01 17 56387946 56387946 C G BZRAP1 Missense_Mutation p.R1209P 0.14 tolerated(0.48) benign(0) TCGA-55-7728-01 17 65040854 65040854 C A CACNG1 Silent p.A26A 0.19 TCGA-55-7728-01 17 72862664 72862666 CGT A FDXR Frame_Shift_Del p.T142Cfs*47 0.18 TCGA-55-7728-01 18 12325517 12325517 G A TUBB6 Silent p.P243P 0.14 TCGA-55-7728-01 18 19751291 19751291 G T GATA6 Silent p.T62T 0.56 TCGA-55-7728-01 18 72176088 72176088 G A CNDP2 Silent p.G127G 0.18 TCGA-55-7728-01 18 77894355 77894355 G T ADNP2 Missense_Mutation p.Q353H 0.18 deleterious(0.02) probably_damaging(0.922) TCGA-55-7728-01 19 10421212 10421212 T A FDX1L Nonsense_Mutation p.K168* 0.09 TCGA-55-7728-01 19 41748808 41748808 G T AXL Missense_Mutation p.A445S 0.17 tolerated(0.1) benign(0.028) TCGA-55-7728-01 19 42509946 42509946 C T GRIK5 Missense_Mutation p.R731H 0.16 deleterious(0.03) possibly_damaging(0.845) TCGA-55-7728-01 19 44376838 44376838 G T ZNF404 Missense_Mutation p.L510I 0.14 deleterious(0) probably_damaging(0.989) TCGA-55-7728-01 19 50093639 50093639 C T PRRG2 Missense_Mutation p.P201L 0.17 tolerated_low_confidence(0.16) benign(0.019) TCGA-55-7728-01 19 53740556 53740556 C T ZNF677 Nonsense_Mutation p.W475* 0.18 TCGA-55-7728-01 19 55697831 55697831 C A PTPRH Splice_Site p.X881_splice 0.23 TCGA-55-7728-01 19 8528531 8528531 C A HNRNPM Missense_Mutation p.N133K 0.18 deleterious(0) possibly_damaging(0.844) TCGA-55-7728-01 19 9407173 9407173 C T ZNF699 Missense_Mutation p.G303R 0.17 tolerated(0.07) probably_damaging(1) TCGA-55-7728-01 1 111216622 111216622 C A KCNA3 Silent p.S270S 0.16 TCGA-55-7728-01 1 150922931 150922931 C T SETDB1 Intron 0.19 TCGA-55-7728-01 1 152275555 152275555 T A FLG Missense_Mutation p.Q3936L 0.18 unknown(0) TCGA-55-7728-01 1 16757825 16757825 G T SPATA21 Intron 0.06 TCGA-55-7728-01 1 175054540 175054540 G T TNN Splice_Site p.X412_splice 0.09 TCGA-55-7728-01 1 201980163 201980163 C G ELF3 5'UTR 0.33 TCGA-55-7728-01 1 22179193 22179193 C A HSPG2 Nonsense_Mutation p.G2242* 0.13 TCGA-55-7728-01 1 223178305 223178305 A C DISP1 Missense_Mutation p.H1189P 0.16 tolerated(0.15) benign(0.005) TCGA-55-7728-01 1 241714278 241714278 G T KMO Missense_Mutation p.M82I 0.21 deleterious(0) possibly_damaging(0.861) TCGA-55-7728-01 1 28218586 28218586 C A RPA2 3'UTR 0.19 TCGA-55-7728-01 20 37547102 37547102 C G PPP1R16B Missense_Mutation p.S499R 0.20 tolerated(0.16) benign(0.13) TCGA-55-7728-01 20 58440889 58440889 C A SYCP2 Missense_Mutation p.S1451I 0.11 tolerated(0.08) benign(0.005) TCGA-55-7728-01 20 5897563 5897563 C T CHGB Missense_Mutation p.T63M 0.22 deleterious(0) benign(0.431) TCGA-55-7728-01 20 62191918 62191918 C A HELZ2 Missense_Mutation p.V2472L 0.17 tolerated(0.21) benign(0.083) TCGA-55-7728-01 20 9546720 9546720 C T PAK7 Silent p.A434A 0.21 TCGA-55-7728-01 2 105472206 105472206 G T POU3F3 Missense_Mutation p.G80W 0.21 deleterious_low_confidence(0) benign(0.245) TCGA-55-7728-01 2 114685027 114685027 C G ACTR3 Missense_Mutation p.L111V 0.19 deleterious(0.04) probably_damaging(0.943) TCGA-55-7728-01 2 150327366 150327366 G T LYPD6 3'UTR 0.14 TCGA-55-7728-01 2 179439161 179439161 G A TTN Missense_Mutation p.R23900W 0.09 TCGA-55-7728-01 2 197597246 197597246 C T CCDC150 Missense_Mutation p.P1089L 0.18 tolerated(1) benign(0.002) TCGA-55-7728-01 2 212295790 212295790 A T ERBB4 Missense_Mutation p.H841Q 0.08 deleterious(0) probably_damaging(1) TCGA-55-7728-01 2 219259426 219259426 A G SLC11A1 Missense_Mutation p.Y487C 0.17 deleterious(0) probably_damaging(0.968) TCGA-55-7728-01 2 234775527 234775527 C A MSL3P1 RNA 0.12 TCGA-55-7728-01 2 26686972 26686972 G T OTOF Missense_Mutation p.Q1655K 0.12 tolerated(0.64) benign(0.044) TCGA-55-7728-01 2 29455179 29455179 C T ALK Missense_Mutation p.G875R 0.21 deleterious(0) probably_damaging(1) TCGA-55-7728-01 2 29606679 29606679 G A ALK Nonsense_Mutation p.R401* 0.13 TCGA-55-7728-01 2 31805946 31805946 G A SRD5A2 RNA 0.22 TCGA-55-7728-01 2 74043183 74043183 A T C2orf78 Missense_Mutation p.Q611H 0.14 tolerated(0.19) probably_damaging(0.975) TCGA-55-7728-01 3 121341659 121341659 C A FBXO40 Missense_Mutation p.S461R 0.19 deleterious(0) possibly_damaging(0.872) TCGA-55-7728-01 3 132320031 132320031 G T ACKR4 Missense_Mutation p.A264S 0.11 deleterious(0) possibly_damaging(0.825) TCGA-55-7728-01 3 142681016 142681016 G A PAQR9 3'UTR 0.19 TCGA-55-7728-01 3 165548821 165548821 T G BCHE Translation_Start_Site p.M1? 0.17 tolerated_low_confidence(0.09) possibly_damaging(0.813) TCGA-55-7728-01 3 182584182 182584182 T C ATP11B Missense_Mutation p.Y524H 0.08 deleterious(0) probably_damaging(1) TCGA-55-7728-01 3 4712560 4712560 G A ITPR1 Silent p.Q703Q 0.20 TCGA-55-7728-01 3 47476594 47476594 T A SCAP Silent p.T52T 0.22 TCGA-55-7728-01 3 48659116 48659116 C A TMEM89 Missense_Mutation p.R25I 0.24 deleterious(0) probably_damaging(0.998) TCGA-55-7728-01 3 58639474 58639474 T A FAM3D Silent p.I16I 0.20 TCGA-55-7728-01 3 77651370 77651370 C A ROBO2 Missense_Mutation p.P971Q 0.15 deleterious(0.02) possibly_damaging(0.804) TCGA-55-7728-01 4 152048799 152048799 C A SH3D19 Missense_Mutation p.G743W 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-7728-01 4 189068081 189068081 C T TRIML1 Missense_Mutation p.P321L 0.27 deleterious(0.03) probably_damaging(1) TCGA-55-7728-01 4 62801757 62801757 C T LPHN3 Nonsense_Mutation p.R737* 0.14 TCGA-55-7728-01 4 85748131 85748131 C A WDFY3 Missense_Mutation p.L320F 0.16 tolerated(0.09) benign(0.052) TCGA-55-7728-01 5 110441783 110441783 G A WDR36 Missense_Mutation p.R430H 0.04 tolerated(0.07) possibly_damaging(0.886) TCGA-55-7728-01 5 121786347 121786347 C A SNCAIP Nonsense_Mutation p.S602* 0.24 TCGA-55-7728-01 5 140590121 140590121 C A PCDHB12 Missense_Mutation p.R548S 0.19 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-55-7728-01 5 140625391 140625391 G A PCDHB15 Missense_Mutation p.G82E 0.14 deleterious_low_confidence(0.01) probably_damaging(0.984) TCGA-55-7728-01 5 172447345 172447377 ATGCTCTACAGTGCTCAGTCTTTGAGGTGACTA - ATP6V0E1 Splice_Site 0.12 TCGA-55-7728-01 5 205868 205868 C A CCDC127 Missense_Mutation p.Q109H 0.25 tolerated(0.2) probably_damaging(0.998) TCGA-55-7728-01 6 109773775 109773775 C A MICAL1 Missense_Mutation p.Q205H 0.05 deleterious(0.02) possibly_damaging(0.63) TCGA-55-7728-01 6 132211538 132211538 A G ENPP1 Missense_Mutation p.I889V 0.09 tolerated(1) benign(0.009) TCGA-55-7728-01 6 155458593 155458593 C A TIAM2 Missense_Mutation p.L493M 0.17 tolerated(0.12) benign(0.358) TCGA-55-7728-01 6 155776234 155776234 C A NOX3 Silent p.L26L 0.23 TCGA-55-7728-01 6 155776235 155776235 A G NOX3 Missense_Mutation p.L26P 0.24 deleterious(0) probably_damaging(0.999) TCGA-55-7728-01 6 167794629 167794629 C A TCP10 Missense_Mutation p.G87W 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-55-7728-01 6 25726547 25726547 G T HIST1H2AA Missense_Mutation p.A70E 0.15 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-55-7728-01 6 43154806 43154806 G T CUL9 Missense_Mutation p.G454W 0.29 tolerated(0.19) possibly_damaging(0.893) TCGA-55-7728-01 6 76713658 76713658 C T IMPG1 Missense_Mutation p.G382E 0.22 tolerated(0.81) benign(0.037) TCGA-55-7728-01 7 31123774 31123774 G T ADCYAP1R1 Missense_Mutation p.R116L 0.16 deleterious(0) probably_damaging(0.996) TCGA-55-7728-01 8 105361635 105361635 G A DCSTAMP Silent p.P285P 0.04 TCGA-55-7728-01 8 110498976 110498976 C A PKHD1L1 Missense_Mutation p.P3269H 0.13 deleterious(0.02) possibly_damaging(0.711) TCGA-55-7728-01 8 144991090 144991090 C T PLEC Missense_Mutation p.R4437Q 0.08 probably_damaging(0.992) TCGA-55-7728-01 8 39467017 39467017 A T ADAM18 Missense_Mutation p.Y94F 0.20 deleterious(0) probably_damaging(0.974) TCGA-55-7728-01 8 42023104 42023104 G T AP3M2 Intron 0.16 TCGA-55-7728-01 9 15185366 15185366 G A TTC39B Missense_Mutation p.S509F 0.17 deleterious(0) probably_damaging(1) TCGA-55-7728-01 9 97321219 97321219 G A FBP2 3'UTR 0.26 TCGA-55-7728-01 X 150349245 150349245 G A GPR50 Missense_Mutation p.R397H 0.22 tolerated_low_confidence(0.18) benign(0.003) TCGA-55-7728-01 X 153696202 153696202 G T PLXNA3 Silent p.A1226A 0.21 TCGA-55-7728-01 X 18775846 18775846 G T PPEF1 Missense_Mutation p.E166D 0.20 tolerated(0.07) benign(0.047) TCGA-55-7728-01 X 54989698 54989698 G T PFKFB1 Missense_Mutation p.P72Q 0.19 possibly_damaging(0.822) TCGA-55-7728-01 X 71360515 71360515 G A NHSL2 Silent p.L1039L 0.11 TCGA-55-7728-01 X 84362763 84362763 T A SATL1 Silent p.S404S 0.30 TCGA-55-7815-01 10 102242322 102242322 G A WNT8B Missense_Mutation p.G269S 0.15 deleterious(0) probably_damaging(0.997) TCGA-55-7815-01 10 104356990 104356990 G T SUFU Missense_Mutation p.D284Y 0.09 tolerated(0.16) possibly_damaging(0.767) TCGA-55-7815-01 10 105770586 105770586 G A SLK Missense_Mutation p.V933M 0.12 deleterious(0.01) possibly_damaging(0.823) TCGA-55-7815-01 10 124353097 124353097 G A DMBT1 Missense_Mutation p.R838Q 0.13 tolerated(0.6) unknown(0) TCGA-55-7815-01 10 82329944 82329944 G T SH2D4B Silent p.G73G 0.18 TCGA-55-7815-01 10 90342049 90342049 G C RNLS Missense_Mutation p.T45R 0.19 deleterious(0) probably_damaging(0.999) TCGA-55-7815-01 10 98807524 98807524 A T SLIT1 Nonsense_Mutation p.C519* 0.26 TCGA-55-7815-01 11 108128265 108128265 G T ATM Nonsense_Mutation p.E770* 0.30 TCGA-55-7815-01 11 123777637 123777637 T A OR8D4 Missense_Mutation p.S167T 0.08 tolerated(0.63) benign(0.006) TCGA-55-7815-01 11 14101549 14101549 C A SPON1 RNA 0.14 TCGA-55-7815-01 11 3125497 3125497 G T OSBPL5 Silent p.P390P 0.10 TCGA-55-7815-01 11 3660985 3660985 G A ART5 Missense_Mutation p.P225L 0.04 deleterious(0.02) possibly_damaging(0.905) TCGA-55-7815-01 11 36614887 36614887 G A RAG2 Nonsense_Mutation p.Q278* 0.07 TCGA-55-7815-01 11 5172979 5172979 G A OR52A1 Silent p.F207F 0.13 TCGA-55-7815-01 11 55798753 55798753 C A OR5AS1 Missense_Mutation p.P287T 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-55-7815-01 11 56058115 56058115 C A OR8H1 Missense_Mutation p.A142S 0.18 tolerated(0.8) benign(0.012) TCGA-55-7815-01 11 64702312 64702312 C T GPHA2 Missense_Mutation p.R108K 0.22 tolerated(0.31) benign(0.001) TCGA-55-7815-01 11 65119159 65119173 TGGAGCTGCCACCTG - DPF2 In_Frame_Del p.W369_L373del 0.10 TCGA-55-7815-01 11 70319334 70319334 G A SHANK2 Silent p.T1731T 0.13 TCGA-55-7815-01 11 73141755 73141755 T A FAM168A Missense_Mutation p.N44I 0.34 deleterious_low_confidence(0.04) benign(0.015) TCGA-55-7815-01 12 1755170 1755170 C G WNT5B Missense_Mutation p.L278V 0.25 deleterious(0) possibly_damaging(0.765) TCGA-55-7815-01 12 18716397 18716397 A C PIK3C2G Missense_Mutation p.Q1248H 0.04 tolerated(0.3) benign(0.049) TCGA-55-7815-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.22 deleterious(0) possibly_damaging(0.479) TCGA-55-7815-01 12 49087591 49087591 C T CCNT1 Missense_Mutation p.G469E 0.23 tolerated(0.08) possibly_damaging(0.642) TCGA-55-7815-01 12 53454578 53454578 G T TENC1 Missense_Mutation p.G973V 0.18 tolerated(0.3) benign(0.082) TCGA-55-7815-01 12 78401192 78401192 C A NAV3 Missense_Mutation p.P625Q 0.17 deleterious(0) probably_damaging(1) TCGA-55-7815-01 12 89916917 89916917 A G GALNT4 Silent p.A470A 0.25 TCGA-55-7815-01 13 37679151 37679151 C T CSNK1A1L Silent p.Q81Q 0.19 TCGA-55-7815-01 14 101405927 101405927 C A SNORD113-6 RNA 0.11 TCGA-55-7815-01 14 105404423 105404423 C T AHNAK2 Missense_Mutation p.G5789S 0.20 possibly_damaging(0.59) TCGA-55-7815-01 14 106866584 106866584 C A IGHV3-38 Missense_Mutation p.R57L 0.23 deleterious_low_confidence(0.01) benign(0.331) TCGA-55-7815-01 14 20528750 20528750 C A OR4L1 Missense_Mutation p.L183I 0.08 deleterious(0.01) benign(0.108) TCGA-55-7815-01 14 23886428 23886428 T A MYH7 Nonsense_Mutation p.K1485* 0.10 TCGA-55-7815-01 14 50458973 50458973 C A C14orf182 Splice_Site 0.24 TCGA-55-7815-01 14 64457753 64457753 G C SYNE2 Missense_Mutation p.E856Q 0.34 probably_damaging(0.947) TCGA-55-7815-01 14 70480191 70480191 G T SMOC1 Silent p.A343A 0.09 TCGA-55-7815-01 14 70712645 70712645 A T ADAM21P1 RNA 0.21 TCGA-55-7815-01 14 88897527 88897527 A T SPATA7 Missense_Mutation p.Q347L 0.34 tolerated(0.41) benign(0.127) TCGA-55-7815-01 14 94526457 94526457 C A DDX24 Missense_Mutation p.A634S 0.31 deleterious(0.02) probably_damaging(0.979) TCGA-55-7815-01 14 94780810 94780810 G T SERPINA6 Missense_Mutation p.P59H 0.09 deleterious(0) probably_damaging(0.994) TCGA-55-7815-01 15 25225173 25225173 G C SNRPN 3'Flank 0.15 TCGA-55-7815-01 15 28235784 28235784 T A OCA2 Nonsense_Mutation p.R352* 0.17 TCGA-55-7815-01 15 42684893 42684893 C G CAPN3 Missense_Mutation p.H334Q 0.23 deleterious(0) probably_damaging(0.972) TCGA-55-7815-01 15 43021262 43021262 G A CDAN1 Silent p.F868F 0.11 TCGA-55-7815-01 16 1306688 1306688 C T TPSD1 Missense_Mutation p.P85L 0.11 tolerated(0.2) benign(0.2) TCGA-55-7815-01 16 1453292 1453292 C G UNKL Missense_Mutation p.R114P 0.24 deleterious(0) probably_damaging(0.999) TCGA-55-7815-01 16 27374684 27374684 C T IL4R Missense_Mutation p.P671S 0.18 deleterious(0.02) possibly_damaging(0.719) TCGA-55-7815-01 16 49672130 49672130 G T ZNF423 Silent p.L311L 0.31 TCGA-55-7815-01 16 50756544 50756544 A T NOD2 Missense_Mutation p.N909I 0.23 deleterious(0) probably_damaging(1) TCGA-55-7815-01 16 57717908 57717908 C T GPR97 Silent p.L316L 0.30 TCGA-55-7815-01 16 72166806 72166806 C A PMFBP1 Nonsense_Mutation p.E430* 0.36 TCGA-55-7815-01 16 7637286 7637286 A G RBFOX1 Missense_Mutation p.N171S 0.10 deleterious(0.02) possibly_damaging(0.53) TCGA-55-7815-01 17 10541609 10541609 C G MYH3 Silent p.T1160T 0.27 TCGA-55-7815-01 17 34497363 34497363 C A TBC1D3B Missense_Mutation p.G185C 0.17 deleterious(0.05) probably_damaging(1) TCGA-55-7815-01 17 35802662 35802662 C T TADA2A Intron 0.19 TCGA-55-7815-01 17 38230696 38230696 C T THRA 5'UTR 0.32 TCGA-55-7815-01 17 39333915 39333915 G T KRTAP4-2 3'UTR 0.25 TCGA-55-7815-01 17 58711300 58711300 T C PPM1D Missense_Mutation p.I263T 0.08 deleterious(0.02) possibly_damaging(0.882) TCGA-55-7815-01 17 76046101 76046101 G A TNRC6C Missense_Mutation p.V320I 0.07 tolerated(0.85) benign(0.012) TCGA-55-7815-01 17 77758643 77758643 G A CBX2 Silent p.S467S 0.28 TCGA-55-7815-01 17 7910764 7910764 A G GUCY2D Missense_Mutation p.Q495R 0.14 tolerated(0.2) benign(0.33) TCGA-55-7815-01 18 14522300 14522300 T A POTEC Missense_Mutation p.K454N 0.23 tolerated(0.23) benign(0.054) TCGA-55-7815-01 18 28991245 28991245 C G DSG4 Missense_Mutation p.S749W 0.24 deleterious(0) probably_damaging(0.996) TCGA-55-7815-01 18 31324952 31324952 A C ASXL3 Missense_Mutation p.S1714R 0.22 benign(0.221) TCGA-55-7815-01 18 56196383 56196383 T A ALPK2 Missense_Mutation p.H1814L 0.15 deleterious(0) probably_damaging(0.965) TCGA-55-7815-01 18 77895908 77895908 G T ADNP2 Missense_Mutation p.G871V 0.15 tolerated(0.09) benign(0.206) TCGA-55-7815-01 19 10610139 10610139 C T KEAP1 Missense_Mutation p.A191T 0.13 deleterious(0) probably_damaging(1) TCGA-55-7815-01 19 14076266 14076266 C A RFX1 Missense_Mutation p.V736L 0.24 tolerated(0.11) benign(0.016) TCGA-55-7815-01 19 15053212 15053212 C A OR7C2 Silent p.L304L 0.09 TCGA-55-7815-01 19 17451852 17451852 G T GTPBP3 Splice_Site p.X357_splice 0.21 TCGA-55-7815-01 19 19906467 19906467 T A ZNF506 Missense_Mutation p.M77L 0.28 tolerated(0.1) benign(0.002) TCGA-55-7815-01 19 2114778 2114778 G A AP3D1 Missense_Mutation p.P798S 0.10 deleterious(0) probably_damaging(0.972) TCGA-55-7815-01 19 22574896 22574896 C T ZNF98 Missense_Mutation p.E381K 0.16 tolerated(0.09) benign(0.005) TCGA-55-7815-01 19 35775872 35775872 C A HAMP Missense_Mutation p.T61N 0.09 deleterious(0.01) probably_damaging(0.975) TCGA-55-7815-01 19 36019165 36019165 C A SBSN Missense_Mutation p.V7F 0.34 tolerated(0.08) unknown(0) TCGA-55-7815-01 19 436408 436408 G A SHC2 Silent p.Y266Y 0.11 TCGA-55-7815-01 19 51483496 51483496 C A KLK7 Missense_Mutation p.V157L 0.38 deleterious(0.01) benign(0.103) TCGA-55-7815-01 19 52869067 52869067 T A ZNF610 Missense_Mutation p.Y146N 0.11 tolerated(0.16) benign(0.061) TCGA-55-7815-01 19 53302129 53302129 C T ZNF28 3'UTR 0.26 TCGA-55-7815-01 19 55556498 55556498 C A RDH13 Missense_Mutation p.A314S 0.28 tolerated(0.72) benign(0.015) TCGA-55-7815-01 1 101186081 101186081 G A VCAM1 Silent p.Q38Q 0.11 TCGA-55-7815-01 1 112269463 112269463 G A FAM212B 3'UTR 0.24 TCGA-55-7815-01 1 147230556 147230556 G T GJA5 Missense_Mutation p.P264H 0.15 deleterious(0.01) benign(0.166) TCGA-55-7815-01 1 152277986 152277986 G A FLG Missense_Mutation p.H3126Y 0.33 unknown(0) TCGA-55-7815-01 1 152278958 152278958 G A FLG Missense_Mutation p.H2802Y 0.09 benign(0.063) TCGA-55-7815-01 1 152280504 152280504 G A FLG Silent p.H2286H 0.07 TCGA-55-7815-01 1 153701103 153701103 C G INTS3 5'UTR 0.15 TCGA-55-7815-01 1 153701104 153701104 T G INTS3 5'UTR 0.14 TCGA-55-7815-01 1 155150586 155150586 C A TRIM46 Missense_Mutation p.Q340K 0.27 tolerated(1) benign(0.012) TCGA-55-7815-01 1 156926306 156926306 C T ARHGEF11 Missense_Mutation p.R526H 0.07 tolerated(0.08) benign(0.003) TCGA-55-7815-01 1 159162365 159162365 C A CADM3 Intron 0.25 TCGA-55-7815-01 1 169349788 169349788 T C BLZF1 Silent p.A246A 0.05 TCGA-55-7815-01 1 236645972 236645972 G T EDARADD 3'UTR 0.17 TCGA-55-7815-01 1 237947181 237947181 C G RYR2 Missense_Mutation p.H4057D 0.13 possibly_damaging(0.497) TCGA-55-7815-01 1 240071045 240071045 G T CHRM3 Missense_Mutation p.Q98H 0.33 deleterious(0) benign(0.295) TCGA-55-7815-01 1 247875362 247875362 A T OR6F1 Missense_Mutation p.S232R 0.11 tolerated(0.13) benign(0.002) TCGA-55-7815-01 1 248512610 248512610 C T OR14C36 Silent p.D178D 0.29 TCGA-55-7815-01 1 26520352 26520352 G T CATSPER4 Missense_Mutation p.W144C 0.12 deleterious(0) probably_damaging(0.998) TCGA-55-7815-01 1 27099440 27099440 A G ARID1A Missense_Mutation p.Y1226C 0.26 unknown(0) TCGA-55-7815-01 1 76253189 76253189 C G RABGGTB Missense_Mutation p.P4R 0.15 tolerated(0.24) benign(0.197) TCGA-55-7815-01 1 84412840 84412840 A G TTLL7 Missense_Mutation p.I158T 0.22 deleterious(0) probably_damaging(0.99) TCGA-55-7815-01 1 84415555 84415555 T A TTLL7 Missense_Mutation p.N91I 0.11 deleterious(0.03) probably_damaging(0.979) TCGA-55-7815-01 20 13847462 13847462 G T SEL1L2 Silent p.A430A 0.12 TCGA-55-7815-01 20 18541292 18541292 C G SEC23B Intron 0.24 TCGA-55-7815-01 20 23667775 23667775 G T CST4 Missense_Mutation p.Q98K 0.10 deleterious(0.03) possibly_damaging(0.72) TCGA-55-7815-01 20 34526674 34526674 G T PHF20 Missense_Mutation p.G786W 0.10 deleterious(0.03) benign(0.287) TCGA-55-7815-01 20 62122063 62122063 C A EEF1A2 Silent p.R266R 0.17 TCGA-55-7815-01 21 45741641 45741641 G T PFKL Silent p.V407V 0.08 TCGA-55-7815-01 21 45741647 45741647 C G PFKL Silent p.A409A 0.09 TCGA-55-7815-01 2 102835488 102835488 A G IL1RL2 Missense_Mutation p.N267S 0.13 tolerated(0.17) benign(0.01) TCGA-55-7815-01 2 103061723 103061723 G C IL18RAP Missense_Mutation p.R332P 0.20 deleterious(0.04) possibly_damaging(0.841) TCGA-55-7815-01 2 106015389 106015389 G T FHL2 5'UTR 0.36 TCGA-55-7815-01 2 128384580 128384580 C T MYO7B Silent p.L1390L 0.29 TCGA-55-7815-01 2 133486463 133486463 C T NCKAP5 Missense_Mutation p.G1836R 0.07 tolerated(0.1) benign(0.003) TCGA-55-7815-01 2 158637031 158637031 C A ACVR1 Missense_Mutation p.G50V 0.11 deleterious(0) probably_damaging(1) TCGA-55-7815-01 2 189912942 189912942 C A COL5A2 Missense_Mutation p.G1065V 0.15 unknown(0) TCGA-55-7815-01 2 197584364 197584364 A T CCDC150 Silent p.S713S 0.21 TCGA-55-7815-01 2 202003137 202003138 CG - CFLAR Intron 0.13 TCGA-55-7815-01 2 219825610 219825610 C A CDK5R2 Silent p.A356A 0.38 TCGA-55-7815-01 2 233323439 233323439 C T ALPI Silent p.D427D 0.13 TCGA-55-7815-01 2 27293105 27293105 C A AGBL5 Missense_Mutation p.P879T 0.22 deleterious_low_confidence(0) benign(0.073) TCGA-55-7815-01 2 32640261 32640261 C G BIRC6 Missense_Mutation p.S634R 0.32 probably_damaging(0.986) TCGA-55-7815-01 2 73868535 73868535 A T NAT8 Missense_Mutation p.L74Q 0.26 deleterious(0.03) possibly_damaging(0.872) TCGA-55-7815-01 2 99234837 99234837 G C UNC50 3'UTR 0.22 TCGA-55-7815-01 3 108829596 108829596 C A MORC1 Missense_Mutation p.V52L 0.13 tolerated(0.14) benign(0.335) TCGA-55-7815-01 3 122437576 122437576 C A PARP14 Silent p.S1526S 0.27 TCGA-55-7815-01 3 12434185 12434185 A G PPARG Missense_Mutation p.K185E 0.12 deleterious(0.03) benign(0.358) TCGA-55-7815-01 3 142537175 142537175 T G PCOLCE2 3'UTR 0.19 TCGA-55-7815-01 3 146309535 146309535 C T PLSCR5 Missense_Mutation p.C196Y 0.16 deleterious(0.02) probably_damaging(0.995) TCGA-55-7815-01 3 15643038 15643038 G A HACL1 5'UTR 0.26 TCGA-55-7815-01 3 183906908 183906908 C G ABCF3 Missense_Mutation p.A337G 0.30 deleterious(0) probably_damaging(0.98) TCGA-55-7815-01 3 39307265 39307265 G A CX3CR1 Missense_Mutation p.P278S 0.24 deleterious(0) probably_damaging(1) TCGA-55-7815-01 3 69987131 69987131 G T MITF Silent p.P171P 0.19 TCGA-55-7815-01 3 69987132 69987132 G T MITF Missense_Mutation p.V172L 0.18 tolerated(0.62) benign(0.253) TCGA-55-7815-01 4 1206787 1206787 G A CTBP1 Silent p.V351V 0.08 TCGA-55-7815-01 4 44687997 44687997 A G GUF1 Missense_Mutation p.N231D 0.09 deleterious(0) possibly_damaging(0.489) TCGA-55-7815-01 4 49052739 49052739 G A CWH43 Missense_Mutation p.E632K 0.07 tolerated(0.15) benign(0.008) TCGA-55-7815-01 4 6383531 6383531 C A PPP2R2C Missense_Mutation p.G15C 0.12 tolerated_low_confidence(0.14) benign(0.001) TCGA-55-7815-01 4 66467836 66467836 C T EPHA5 Missense_Mutation p.G145R 0.22 tolerated(0.07) probably_damaging(1) TCGA-55-7815-01 4 84377294 84377294 G A MRPS18C Missense_Mutation p.A22T 0.16 tolerated(0.15) benign(0.093) TCGA-55-7815-01 5 1213651 1213651 G T SLC6A19 Missense_Mutation p.G246V 0.08 deleterious(0) probably_damaging(0.982) TCGA-55-7815-01 5 138857009 138857009 C A TMEM173 Missense_Mutation p.R284M 0.21 deleterious(0) probably_damaging(1) TCGA-55-7815-01 5 140712464 140712464 C T PCDHGA1 Missense_Mutation p.S738L 0.22 deleterious_low_confidence(0) benign(0.082) TCGA-55-7815-01 5 140784592 140784592 C G PCDHGA9 Silent p.L691L 0.23 TCGA-55-7815-01 5 149498364 149498364 G T PDGFRB Silent p.P950P 0.12 TCGA-55-7815-01 5 67590998 67590998 T C PIK3R1 Silent p.L531L 0.13 TCGA-55-7815-01 6 139229864 139229864 T C REPS1 Silent p.E718E 0.11 TCGA-55-7815-01 6 25771165 25771165 G T SLC17A4 Missense_Mutation p.G211W 0.22 deleterious(0) probably_damaging(1) TCGA-55-7815-01 6 31238055 31238055 C A HLA-C Missense_Mutation p.G276V 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-7815-01 6 33756865 33756865 C G LEMD2 Missense_Mutation p.R10P 0.17 tolerated(0.08) possibly_damaging(0.767) TCGA-55-7815-01 6 46656968 46656968 G A TDRD6 Missense_Mutation p.R368Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-7815-01 6 57246883 57246883 G T PRIM2 Missense_Mutation p.D204Y 0.19 deleterious(0.04) benign(0.123) TCGA-55-7815-01 6 656374 656374 G C HUS1B Missense_Mutation p.L191V 0.19 deleterious(0) possibly_damaging(0.868) TCGA-55-7815-01 7 110762846 110762846 C A LRRN3 Silent p.L6L 0.17 TCGA-55-7815-01 7 13971233 13971233 G A ETV1 Silent p.H232H 0.21 TCGA-55-7815-01 7 154875951 154875951 G A HTR5A Silent p.R276R 0.06 TCGA-55-7815-01 7 29918676 29918676 C T WIPF3 Missense_Mutation p.A92V 0.21 deleterious(0.05) benign(0.053) TCGA-55-7815-01 7 48559687 48559687 T C ABCA13 Silent p.P4616P 0.11 TCGA-55-7815-01 7 5567400 5567400 G C ACTB Missense_Mutation p.I369M 0.10 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-55-7815-01 7 82430833 82430833 C A PCLO Splice_Site p.X5003_splice 0.27 TCGA-55-7815-01 7 92765094 92765094 G A SAMD9L Missense_Mutation p.P64L 0.12 deleterious(0) probably_damaging(0.945) TCGA-55-7815-01 8 102731524 102731524 C T NCALD Missense_Mutation p.G112R 0.10 tolerated(0.08) possibly_damaging(0.6) TCGA-55-7815-01 8 11994973 11994973 T G USP17L2 Missense_Mutation p.T433P 0.20 deleterious(0) probably_damaging(0.996) TCGA-55-7815-01 8 41522415 41522415 C A ANK1 Intron 0.11 TCGA-55-7815-01 8 62289263 62289263 C A CLVS1 Missense_Mutation p.D185E 0.24 deleterious(0) probably_damaging(0.999) TCGA-55-7815-01 8 77616827 77616827 C A ZFHX4 Missense_Mutation p.D168E 0.19 possibly_damaging(0.621) TCGA-55-7815-01 8 87242189 87242189 C A SLC7A13 Silent p.G106G 0.14 TCGA-55-7815-01 8 88886072 88886072 C A DCAF4L2 Missense_Mutation p.C43F 0.15 deleterious(0) probably_damaging(0.927) TCGA-55-7815-01 9 100008433 100008433 G T CCDC180 5'UTR 0.24 TCGA-55-7815-01 9 125377261 125377261 T A OR1Q1 Missense_Mutation p.L82Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-55-7815-01 9 131118034 131118034 G T SLC27A4 Missense_Mutation p.R578L 0.25 deleterious(0) benign(0.369) TCGA-55-7815-01 9 13216825 13216825 C A MPDZ Missense_Mutation p.S413I 0.21 deleterious(0) benign(0.255) TCGA-55-7815-01 9 18680333 18680333 C A ADAMTSL1 Missense_Mutation p.A387E 0.25 deleterious(0) probably_damaging(0.992) TCGA-55-7815-01 9 2039691 2039691 G T SMARCA2 Missense_Mutation p.R194L 0.14 probably_damaging(0.992) TCGA-55-7815-01 9 86905118 86905118 C G SLC28A3 Missense_Mutation p.G367A 0.17 deleterious(0) probably_damaging(0.997) TCGA-55-7815-01 9 90500907 90500907 A T SPATA31E1 Missense_Mutation p.Q502L 0.28 deleterious(0.01) possibly_damaging(0.615) TCGA-55-7815-01 9 95077881 95077881 T C NOL8 Silent p.K342K 0.16 TCGA-55-7815-01 9 96233568 96233568 G A FAM120A Missense_Mutation p.R207Q 0.12 tolerated(0.2) probably_damaging(0.933) TCGA-55-7815-01 X 1746629 1746629 C A ASMT Silent p.G136G 0.12 TCGA-55-7815-01 X 34961245 34961245 G T FAM47B Missense_Mutation p.K99N 0.31 deleterious(0.04) benign(0.014) TCGA-55-7815-01 X 47041360 47041364 CGTCT - RBM10 Frame_Shift_Del p.V569Yfs*6 0.40 TCGA-55-7815-01 X 47060987 47060987 G T UBA1 Missense_Mutation p.Q263H 0.62 tolerated(0.06) benign(0.001) TCGA-55-7815-01 X 591804 591804 G C SHOX Missense_Mutation p.D58H 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.503) TCGA-55-7815-01 X 65480099 65480099 G C HEPH Missense_Mutation p.R1119P 0.57 deleterious(0.04) benign(0.025) TCGA-55-7815-01 X 69455988 69455988 C A AWAT1 Missense_Mutation p.T85K 0.40 tolerated(1) benign(0.012) TCGA-55-7816-01 16 55362797 55362797 C T IRX6 Nonsense_Mutation p.R303* 0.07 TCGA-55-7816-01 20 30729321 30729321 G A TM9SF4 Missense_Mutation p.R84Q 0.09 deleterious(0) probably_damaging(0.972) TCGA-55-7903-01 10 124013514 124013514 A C TACC2 Missense_Mutation p.E2930D 0.20 probably_damaging(0.969) TCGA-55-7903-01 10 124333279 124333279 G A DMBT1 Splice_Site p.X95_splice 0.24 TCGA-55-7903-01 10 12833187 12833187 G A CAMK1D Missense_Mutation p.S199N 0.26 tolerated(0.05) benign(0.029) TCGA-55-7903-01 10 17204237 17204237 C G TRDMT1 Splice_Site p.X84_splice 0.29 TCGA-55-7903-01 10 59955896 59955896 C T IPMK Missense_Mutation p.G398R 0.17 deleterious(0) probably_damaging(0.996) TCGA-55-7903-01 10 69934049 69934049 G A MYPN Missense_Mutation p.A734T 0.04 tolerated(0.19) benign(0) TCGA-55-7903-01 10 70225496 70225496 T A DNA2 Missense_Mutation p.N258I 0.33 deleterious(0.02) benign(0.142) TCGA-55-7903-01 10 89475540 89475540 A C PAPSS2 Missense_Mutation p.K269Q 0.30 deleterious(0.05) benign(0.018) TCGA-55-7903-01 11 118772162 118772162 G A BCL9L Missense_Mutation p.P764S 0.15 benign(0.392) TCGA-55-7903-01 11 118960770 118960770 G C HMBS Missense_Mutation p.E139Q 0.18 tolerated(0.07) possibly_damaging(0.67) TCGA-55-7903-01 11 119291006 119291006 G A THY1 Missense_Mutation p.T43I 0.33 deleterious(0.02) possibly_damaging(0.549) TCGA-55-7903-01 11 124189609 124189609 C T OR8D2 Missense_Mutation p.R162H 0.43 tolerated(0.13) benign(0.005) TCGA-55-7903-01 11 30433051 30433051 T G MPPED2 Silent p.P283P 0.50 TCGA-55-7903-01 11 33886309 33886309 G A LMO2 Silent p.G101G 0.51 TCGA-55-7903-01 11 55904276 55904276 T A OR8J3 Missense_Mutation p.N307Y 0.08 deleterious(0.04) benign(0.021) TCGA-55-7903-01 11 56510879 56510879 G T OR9G4 Missense_Mutation p.R137S 0.21 deleterious(0) possibly_damaging(0.872) TCGA-55-7903-01 11 61124140 61124140 G A CYB561A3 Silent p.L33L 0.07 TCGA-55-7903-01 11 62571439 62571439 C G NXF1 Missense_Mutation p.E14Q 0.18 tolerated(0.26) unknown(0) TCGA-55-7903-01 11 76372201 76372201 C A LRRC32 Missense_Mutation p.G146W 0.29 deleterious(0.03) possibly_damaging(0.838) TCGA-55-7903-01 12 107713770 107713770 G A BTBD11 Silent p.L351L 0.30 TCGA-55-7903-01 12 117681123 117681123 C A NOS1 Nonsense_Mutation p.E1015* 0.33 TCGA-55-7903-01 12 129467642 129467642 C A GLT1D1 3'UTR 0.24 TCGA-55-7903-01 12 133375030 133375030 G T GOLGA3 Missense_Mutation p.H612N 0.25 tolerated(0.13) probably_damaging(0.998) TCGA-55-7903-01 12 2676956 2676956 A T CACNA1C Missense_Mutation p.T631S 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-55-7903-01 12 48142639 48142639 C T RAPGEF3 Missense_Mutation p.A373T 0.09 tolerated(0.5) benign(0.001) TCGA-55-7903-01 12 49298002 49298002 C A CCDC65 5'UTR 0.17 TCGA-55-7903-01 12 49745252 49745252 T A DNAJC22 Missense_Mutation p.S331R 0.43 tolerated(0.47) benign(0.038) TCGA-55-7903-01 12 54394137 54394137 C T HOXC9 Silent p.F55F 0.07 TCGA-55-7903-01 12 57000043 57000043 C T BAZ2A Silent p.K751K 0.20 TCGA-55-7903-01 12 6933408 6933408 G A GPR162 Missense_Mutation p.R115H 0.08 deleterious(0) probably_damaging(0.998) TCGA-55-7903-01 12 6965958 6965958 C T USP5 Silent p.F224F 0.05 TCGA-55-7903-01 12 9845494 9845494 G T CLEC2D Missense_Mutation p.W143L 0.32 deleterious(0) probably_damaging(1) TCGA-55-7903-01 13 27333689 27333689 C A GPR12 Silent p.L92L 0.41 TCGA-55-7903-01 13 77847655 77847655 G A MYCBP2 Silent p.I261I 0.40 TCGA-55-7903-01 14 102028667 102028667 C T DIO3 Silent p.D278D 0.04 TCGA-55-7903-01 14 104206830 104206830 A T PPP1R13B Silent p.P641P 0.30 TCGA-55-7903-01 14 104471666 104471666 C A TDRD9 Missense_Mutation p.P546Q 0.05 deleterious(0) probably_damaging(1) TCGA-55-7903-01 14 21788336 21788336 G A RPGRIP1 Silent p.E489E 0.10 TCGA-55-7903-01 14 31371778 31371778 C T STRN3 Missense_Mutation p.E701K 0.05 deleterious(0) probably_damaging(0.986) TCGA-55-7903-01 14 55218249 55218249 G T SAMD4A Missense_Mutation p.L390F 0.08 deleterious(0) probably_damaging(0.991) TCGA-55-7903-01 14 55818909 55818909 A G FBXO34 Missense_Mutation p.T601A 0.51 deleterious(0.04) probably_damaging(0.997) TCGA-55-7903-01 14 57676740 57676740 C A EXOC5 Missense_Mutation p.L551F 0.18 deleterious(0.04) possibly_damaging(0.831) TCGA-55-7903-01 14 58033208 58033208 C A SLC35F4 Missense_Mutation p.V437F 0.38 deleterious(0) probably_damaging(0.914) TCGA-55-7903-01 14 63416975 63416975 C A KCNH5 Missense_Mutation p.K415N 0.30 tolerated(0.1) probably_damaging(0.999) TCGA-55-7903-01 14 73490979 73490979 G A ZFYVE1 Missense_Mutation p.H80Y 0.40 deleterious_low_confidence(0.05) benign(0.036) TCGA-55-7903-01 14 80668643 80668645 CCT AA DIO2 3'Flank 0.27 TCGA-55-7903-01 14 96953381 96953381 T C AK7 Silent p.P707P 0.35 TCGA-55-7903-01 15 65491330 65491330 A G CILP Missense_Mutation p.C432R 0.09 deleterious(0) probably_damaging(0.996) TCGA-55-7903-01 15 83523419 83523419 C G HOMER2 Missense_Mutation p.E221Q 0.26 deleterious(0) probably_damaging(0.996) TCGA-55-7903-01 16 18893522 18893522 G A SMG1 Missense_Mutation p.R420W 0.38 deleterious(0.01) probably_damaging(0.993) TCGA-55-7903-01 16 20952737 20952737 G A DNAH3 Silent p.L3880L 0.37 TCGA-55-7903-01 16 29883532 29883532 G A SEZ6L2 Silent p.F893F 0.14 TCGA-55-7903-01 16 4727498 4727500 GAA - MGRN1 In_Frame_Del p.K332del 0.25 TCGA-55-7903-01 16 51171263 51171263 C T SALL1 Silent p.L1245L 0.25 TCGA-55-7903-01 16 53260328 53260328 A G CHD9 Missense_Mutation p.I649M 0.29 benign(0.064) TCGA-55-7903-01 16 57284415 57284415 G A ARL2BP Missense_Mutation p.R129K 0.29 tolerated(0.45) benign(0.031) TCGA-55-7903-01 16 70818036 70818036 G A VAC14 Missense_Mutation p.R192W 0.07 deleterious(0) probably_damaging(0.996) TCGA-55-7903-01 17 39994186 39994186 T C KLHL10 Translation_Start_Site p.M1? 0.41 tolerated_low_confidence(0.06) benign(0.011) TCGA-55-7903-01 17 62226339 62226339 T A TEX2 Missense_Mutation p.D1132V 0.09 deleterious_low_confidence(0) benign(0.419) TCGA-55-7903-01 17 62226340 62226340 C A TEX2 Missense_Mutation p.D1132Y 0.09 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-55-7903-01 17 7573964 7573964 C T TP53 Missense_Mutation p.A355T 0.13 tolerated(0.23) benign(0.042) TCGA-55-7903-01 17 7579583 7579583 A - TP53 Frame_Shift_Del p.L35Cfs*9 0.31 TCGA-55-7903-01 18 11752513 11752513 G C GNAL Intron 0.06 TCGA-55-7903-01 18 30977173 30977173 C A CCDC178 Splice_Site p.X20_splice 0.32 TCGA-55-7903-01 18 34273362 34273362 C T FHOD3 Missense_Mutation p.P563S 0.17 tolerated_low_confidence(0.32) benign(0.003) TCGA-55-7903-01 18 42531549 42531549 C - SETBP1 Frame_Shift_Del p.R750Gfs*34 0.24 TCGA-55-7903-01 18 65180619 65180619 T - DSEL Frame_Shift_Del p.H420Tfs*39 0.26 TCGA-55-7903-01 18 67781805 67781805 G A RTTN Silent p.L1187L 0.34 TCGA-55-7903-01 19 14875276 14875276 C T EMR2 Silent p.G351G 0.14 TCGA-55-7903-01 19 19337426 19337426 C A NCAN Missense_Mutation p.P402T 0.12 tolerated(0.24) benign(0.012) TCGA-55-7903-01 19 19338673 19338673 G A NCAN Silent p.T748T 0.09 TCGA-55-7903-01 19 19744910 19744910 G A GMIP Missense_Mutation p.P725L 0.06 tolerated_low_confidence(0.13) benign(0.016) TCGA-55-7903-01 19 2399124 2399124 G T TMPRSS9 Silent p.R115R 0.29 TCGA-55-7903-01 19 29698679 29698679 C G UQCRFS1 Missense_Mutation p.D201H 0.22 deleterious(0) probably_damaging(1) TCGA-55-7903-01 19 46838184 46838184 C A HIF3A Missense_Mutation p.P618Q 0.20 tolerated_low_confidence(0.47) benign(0.007) TCGA-55-7903-01 19 47181778 47181778 C A PRKD2 Missense_Mutation p.G738V 0.30 deleterious(0) probably_damaging(1) TCGA-55-7903-01 19 49547355 49547355 C T CGB5 5'UTR 0.28 TCGA-55-7903-01 19 51022413 51022413 C T LRRC4B Missense_Mutation p.R186H 0.22 tolerated(0.07) benign(0.109) TCGA-55-7903-01 19 51563323 51563323 G T KLK13 Missense_Mutation p.H89Q 0.19 deleterious(0.02) probably_damaging(1) TCGA-55-7903-01 19 52147227 52147227 C T SIGLEC14 Missense_Mutation p.A273T 0.40 deleterious(0.05) benign(0.002) TCGA-55-7903-01 19 53959918 53959918 G T ZNF761 RNA 0.23 TCGA-55-7903-01 19 57301308 57301308 G C ZIM2 Missense_Mutation p.Q137E 0.33 deleterious(0.04) benign(0.145) TCGA-55-7903-01 1 10702967 10702967 T A CASZ1 Missense_Mutation p.M1371L 0.35 tolerated_low_confidence(0.6) benign(0.097) TCGA-55-7903-01 1 117150638 117150638 T G IGSF3 Missense_Mutation p.K383T 0.38 deleterious(0) benign(0.206) TCGA-55-7903-01 1 145532169 145532169 G T ITGA10 Silent p.L271L 0.08 TCGA-55-7903-01 1 151518312 151518312 G A TUFT1 Intron 0.27 TCGA-55-7903-01 1 153949696 153949711 GGGGAGGCCAGGCCTC - JTB Frame_Shift_Del p.P8Afs*13 0.10 TCGA-55-7903-01 1 155290326 155290326 G A FDPS Missense_Mutation p.E396K 0.05 tolerated(0.12) benign(0.002) TCGA-55-7903-01 1 157772326 157772326 C A FCRL1 Missense_Mutation p.G150W 0.48 deleterious(0) probably_damaging(1) TCGA-55-7903-01 1 166135391 166135391 G T FAM78B Missense_Mutation p.T32K 0.27 deleterious(0) probably_damaging(0.997) TCGA-55-7903-01 1 167082975 167082975 G A DUSP27 Missense_Mutation p.E47K 0.04 deleterious(0) probably_damaging(0.972) TCGA-55-7903-01 1 172554999 172554999 A T SUCO Silent p.G523G 0.44 TCGA-55-7903-01 1 182553258 182553258 G T RNASEL Silent p.I508I 0.20 TCGA-55-7903-01 1 196799682 196799682 T C CFHR1 Silent p.T220T 0.40 TCGA-55-7903-01 1 203154346 203154346 T A CHI3L1 Missense_Mutation p.T75S 0.08 tolerated(0.24) benign(0.003) TCGA-55-7903-01 1 203472695 203472695 C A OPTC Silent p.T282T 0.38 TCGA-55-7903-01 1 213186478 213186478 G A ANGEL2 Silent p.N114N 0.23 TCGA-55-7903-01 1 214170908 214170908 G C PROX1 Missense_Mutation p.E344Q 0.24 deleterious(0.04) possibly_damaging(0.757) TCGA-55-7903-01 1 220232099 220232099 G A BPNT1 3'UTR 0.29 TCGA-55-7903-01 1 220791735 220791736 - T MARK1 Frame_Shift_Ins p.L213Ffs*22 0.37 TCGA-55-7903-01 1 240070927 240070927 C A CHRM3 Missense_Mutation p.P59H 0.58 tolerated(0.12) benign(0.313) TCGA-55-7903-01 1 248551197 248551197 C A OR2T6 Silent p.A96A 0.61 TCGA-55-7903-01 1 55161113 55161113 G C MROH7 Missense_Mutation p.E972Q 0.31 deleterious(0.04) possibly_damaging(0.766) TCGA-55-7903-01 1 59165712 59165712 C G MYSM1 Missense_Mutation p.E5Q 0.09 deleterious(0.04) possibly_damaging(0.701) TCGA-55-7903-01 1 64516358 64516358 G T ROR1 Missense_Mutation p.G151V 0.29 deleterious(0) possibly_damaging(0.707) TCGA-55-7903-01 1 79094635 79094635 G T IFI44L Splice_Site p.X160_splice 0.32 TCGA-55-7903-01 1 79094636 79094636 G T IFI44L Missense_Mutation p.G160V 0.33 deleterious(0) probably_damaging(0.996) TCGA-55-7903-01 1 85510827 85510827 C T MCOLN3 Missense_Mutation p.V73M 0.41 deleterious(0) probably_damaging(0.973) TCGA-55-7903-01 20 30345327 30345327 C T TPX2 Silent p.F16F 0.22 TCGA-55-7903-01 20 60768505 60768505 G T MTG2 Missense_Mutation p.R10I 0.06 deleterious_low_confidence(0.05) benign(0.235) TCGA-55-7903-01 20 61460123 61460123 C A COL9A3 Missense_Mutation p.P303Q 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-55-7903-01 20 61574378 61574378 C A GID8 Missense_Mutation p.S53Y 0.07 deleterious(0) probably_damaging(0.987) TCGA-55-7903-01 20 62324190 62324190 G T RTEL1 Missense_Mutation p.R919S 0.07 tolerated(0.08) benign(0.089) TCGA-55-7903-01 21 15750686 15750686 C A HSPA13 Missense_Mutation p.E138D 0.19 tolerated(0.2) possibly_damaging(0.635) TCGA-55-7903-01 21 30338965 30338965 A - LTN1 Frame_Shift_Del p.L663Ffs*33 0.13 TCGA-55-7903-01 21 33887132 33887132 G C EVA1C Missense_Mutation p.E320Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-55-7903-01 21 44524456 44524456 G A U2AF1 Missense_Mutation p.S34F 0.22 deleterious(0) possibly_damaging(0.835) TCGA-55-7903-01 21 44527627 44527627 C T U2AF1 5'UTR 0.22 TCGA-55-7903-01 21 47916917 47916917 C T DIP2A Silent p.A100A 0.16 TCGA-55-7903-01 22 19120012 19120012 G A TSSK2 3'UTR 0.06 TCGA-55-7903-01 22 21991356 21991356 C A CCDC116 Silent p.V613V 0.30 TCGA-55-7903-01 22 28193018 28193018 C A MN1 Missense_Mutation p.D1172Y 0.17 probably_damaging(1) TCGA-55-7903-01 22 50956689 50956689 A T NCAPH2 Missense_Mutation p.M210L 0.15 tolerated(0.67) benign(0.002) TCGA-55-7903-01 2 101885540 101885540 A T CNOT11 Missense_Mutation p.H426L 0.16 deleterious(0) probably_damaging(0.992) TCGA-55-7903-01 2 108475942 108475942 A T RGPD4 Missense_Mutation p.K522N 0.28 deleterious(0) possibly_damaging(0.788) TCGA-55-7903-01 2 141625810 141625810 C T LRP1B Missense_Mutation p.D1398N 0.14 benign(0.013) TCGA-55-7903-01 2 141625811 141625811 C A LRP1B Missense_Mutation p.W1397C 0.14 benign(0.074) TCGA-55-7903-01 2 179616751 179616751 C A TTN Intron 0.16 TCGA-55-7903-01 2 201434609 201434609 C - SGOL2 Frame_Shift_Del p.R234Efs*15 0.17 TCGA-55-7903-01 2 209190010 209190010 G T PIKFYVE Silent p.L825L 0.17 TCGA-55-7903-01 2 210896119 210896119 C T KANSL1L Intron 0.26 TCGA-55-7903-01 2 230223246 230223247 - A DNER 3'UTR 0.19 TCGA-55-7903-01 2 40655667 40655667 C T SLC8A1 Missense_Mutation p.G585E 0.28 deleterious(0) probably_damaging(0.999) TCGA-55-7903-01 2 69318050 69318050 A G ANTXR1 Silent p.G234G 0.07 TCGA-55-7903-01 2 99978277 99978277 G A EIF5B Missense_Mutation p.A305T 0.39 possibly_damaging(0.483) TCGA-55-7903-01 3 100356215 100356215 G A GPR128 Missense_Mutation p.A223T 0.40 tolerated(0.39) benign(0.043) TCGA-55-7903-01 3 151164743 151164743 C G IGSF10 Missense_Mutation p.R1009P 0.40 deleterious(0.04) possibly_damaging(0.832) TCGA-55-7903-01 3 159606673 159606673 G A IQCJ-SCHIP1 Missense_Mutation p.R496K 0.25 tolerated(0.11) probably_damaging(0.97) TCGA-55-7903-01 3 186268929 186268929 T C TBCCD1 3'UTR 0.39 TCGA-55-7903-01 3 50645182 50645182 C A CISH Silent p.V228V 0.31 TCGA-55-7903-01 4 134073114 134073114 G A PCDH10 Missense_Mutation p.D607N 0.20 deleterious(0) probably_damaging(0.999) TCGA-55-7903-01 4 153273641 153273641 A G FBXW7 Intron 0.26 TCGA-55-7903-01 4 160268001 160268001 G T RAPGEF2 Missense_Mutation p.R1027M 0.31 tolerated(0.05) probably_damaging(0.984) TCGA-55-7903-01 4 20620487 20620487 G T SLIT2 Missense_Mutation p.C1482F 0.57 deleterious(0) probably_damaging(0.994) TCGA-55-7903-01 4 23803877 23803877 T A PPARGC1A Missense_Mutation p.E704V 0.69 tolerated(1) unknown(0) TCGA-55-7903-01 4 25417102 25417102 G T ANAPC4 Missense_Mutation p.G614V 0.55 deleterious(0.05) possibly_damaging(0.489) TCGA-55-7903-01 4 74306366 74306366 G T AFP Missense_Mutation p.E106D 0.50 tolerated(0.75) benign(0.023) TCGA-55-7903-01 4 77677649 77677649 C T SHROOM3 Missense_Mutation p.P1586L 0.26 tolerated(0.08) benign(0.03) TCGA-55-7903-01 5 101813454 101813454 C G SLCO6A1 Missense_Mutation p.G243A 0.35 tolerated(0.44) benign(0.167) TCGA-55-7903-01 5 126755842 126755842 C T MEGF10 Silent p.D511D 0.35 TCGA-55-7903-01 5 137600050 137600050 G A GFRA3 Silent p.L93L 0.17 TCGA-55-7903-01 5 140188828 140188828 G C PCDHA4 Missense_Mutation p.A686P 0.35 tolerated_low_confidence(0.08) benign(0.004) TCGA-55-7903-01 5 140241000 140241000 G T AC005609.1 3'UTR 0.20 TCGA-55-7903-01 5 140516913 140516913 G A PCDHB5 Missense_Mutation p.D633N 0.29 deleterious_low_confidence(0) possibly_damaging(0.519) TCGA-55-7903-01 5 140626348 140626348 A G PCDHB15 Missense_Mutation p.Y401C 0.33 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-55-7903-01 5 16572124 16572124 C A FAM134B Missense_Mutation p.M136I 0.11 tolerated(0.29) benign(0.075) TCGA-55-7903-01 5 167988438 167988438 T C PANK3 Missense_Mutation p.N299S 0.33 tolerated(0.05) benign(0.014) TCGA-55-7903-01 5 169535488 169535488 G T FOXI1 Missense_Mutation p.W337L 0.29 tolerated(0.21) probably_damaging(0.997) TCGA-55-7903-01 5 175110362 175110362 C A HRH2 Silent p.A42A 0.28 TCGA-55-7903-01 5 176637018 176637018 G T NSD1 Missense_Mutation p.G540W 0.36 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-55-7903-01 5 26881724 26881724 C T CDH9 Missense_Mutation p.V631M 0.15 deleterious(0.02) benign(0.006) TCGA-55-7903-01 5 39341264 39341264 G A C9 Nonsense_Mutation p.R154* 0.27 TCGA-55-7903-01 5 43175089 43175089 G T ZNF131 Nonsense_Mutation p.E542* 0.27 TCGA-55-7903-01 5 45262605 45262605 G A HCN1 Silent p.C697C 0.26 TCGA-55-7903-01 5 70946009 70946009 A G MCCC2 Missense_Mutation p.Q496R 0.34 tolerated_low_confidence(0.25) benign(0.002) TCGA-55-7903-01 5 76987267 76987267 C T TBCA Silent p.L101L 0.19 TCGA-55-7903-01 5 77477446 77477446 G A AP3B1 Missense_Mutation p.S276F 0.36 deleterious(0) probably_damaging(0.968) TCGA-55-7903-01 5 78251288 78251288 T C ARSB Missense_Mutation p.E243G 0.16 tolerated(0.55) benign(0.002) TCGA-55-7903-01 6 142691435 142691435 G A GPR126 Missense_Mutation p.V192I 0.58 tolerated(0.93) benign(0.001) TCGA-55-7903-01 6 16306818 16306818 G A ATXN1 Silent p.I730I 0.04 TCGA-55-7903-01 6 29797446 29797446 C T HLA-G Missense_Mutation p.P291S 0.21 deleterious_low_confidence(0.04) benign(0.214) TCGA-55-7903-01 6 31675858 31675858 G T LY6G6F Missense_Mutation p.R198I 0.04 deleterious(0) possibly_damaging(0.766) TCGA-55-7903-01 6 33405994 33405994 G A SYNGAP1 Missense_Mutation p.A438T 0.35 deleterious(0.01) benign(0.017) TCGA-55-7903-01 6 4032674 4032674 G - PRPF4B Frame_Shift_Del p.S309Pfs*63 0.18 TCGA-55-7903-01 6 549247 549247 T A EXOC2 Missense_Mutation p.E722D 0.33 tolerated(0.33) benign(0.037) TCGA-55-7903-01 7 100319326 100319326 G A EPO Silent p.T53T 0.18 TCGA-55-7903-01 7 122634844 122634844 G T TAS2R16 Missense_Mutation p.T282K 0.34 tolerated(1) benign(0.059) TCGA-55-7903-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.31 deleterious(0) probably_damaging(0.967) TCGA-55-7903-01 7 140534477 140534477 G A BRAF Missense_Mutation p.R146W 0.29 tolerated(0.09) possibly_damaging(0.852) TCGA-55-7903-01 7 34989430 34989430 C T DPY19L1 Silent p.E394E 0.21 TCGA-55-7903-01 7 38431514 38431514 G A AMPH Silent p.D571D 0.33 TCGA-55-7903-01 7 81634739 81634739 C A CACNA2D1 Missense_Mutation p.K530N 0.26 deleterious(0.03) possibly_damaging(0.843) TCGA-55-7903-01 7 84685053 84685053 G T SEMA3D Silent p.R281R 0.04 TCGA-55-7903-01 7 97481608 97481608 C A ASNS Missense_Mutation p.R550L 0.17 deleterious(0) possibly_damaging(0.749) TCGA-55-7903-01 8 104419926 104419926 G A SLC25A32 Missense_Mutation p.L81F 0.41 tolerated(0.09) probably_damaging(1) TCGA-55-7903-01 8 139606389 139606389 G C COL22A1 Missense_Mutation p.Q1496E 0.06 unknown(0) TCGA-55-7903-01 8 48801713 48801713 C A PRKDC Missense_Mutation p.S1380I 0.31 possibly_damaging(0.642) TCGA-55-7903-01 8 6682698 6682698 T A XKR5 RNA 0.31 TCGA-55-7903-01 8 68255551 68255551 C T ARFGEF1 5'UTR 0.04 TCGA-55-7903-01 8 71075726 71075726 C T NCOA2 Missense_Mutation p.S269N 0.33 deleterious(0.03) possibly_damaging(0.632) TCGA-55-7903-01 8 72755864 72755864 C T RP11-383H13.1 Silent p.C76C 0.06 TCGA-55-7903-01 8 86377533 86377545 GCCAAGGGAGAGC - CA2 Frame_Shift_Del p.K24Sfs*17 0.14 TCGA-55-7903-01 9 107562812 107562812 C T ABCA1 Silent p.L1584L 0.08 TCGA-55-7903-01 9 129642655 129642655 A G ZBTB34 Missense_Mutation p.Q322R 0.32 tolerated(0.22) benign(0.028) TCGA-55-7903-01 9 134353948 134353948 C - PRRC2B Frame_Shift_Del p.K1568Rfs*49 0.19 TCGA-55-7903-01 9 21216973 21216973 T C IFNA16 Missense_Mutation p.E111G 0.15 tolerated(1) benign(0.006) TCGA-55-7903-01 X 155235849 155235849 C A IL9R Missense_Mutation p.P295T 0.33 deleterious(0.01) possibly_damaging(0.539) TCGA-55-7903-01 X 3235828 3235828 C G MXRA5 Missense_Mutation p.G1965A 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-7903-01 X 71350580 71350580 G A RGAG4 Missense_Mutation p.R271C 0.15 tolerated(0.1) probably_damaging(0.999) TCGA-55-7903-01 X 78427044 78427044 C G GPR174 Silent p.A180A 0.58 TCGA-55-7903-01 X 91134202 91134202 C T PCDH11X Missense_Mutation p.P988L 0.52 deleterious(0.03) probably_damaging(0.988) TCGA-55-7907-01 10 101089340 101089340 G A CNNM1 Missense_Mutation p.E66K 0.21 deleterious(0.01) benign(0.2) TCGA-55-7907-01 10 101559009 101559009 G C ABCC2 Missense_Mutation p.V305L 0.28 tolerated(0.63) benign(0.007) TCGA-55-7907-01 10 102822842 102822842 C A KAZALD1 Missense_Mutation p.P165T 0.33 tolerated(0.27) benign(0.044) TCGA-55-7907-01 10 103534631 103534631 C G FGF8 Silent p.V65V 0.37 TCGA-55-7907-01 10 103869187 103869187 G C LDB1 Silent p.L270L 0.19 TCGA-55-7907-01 10 103901572 103901572 G C PPRC1 Missense_Mutation p.E1103Q 0.27 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-55-7907-01 10 104019846 104019846 C G GBF1 Missense_Mutation p.L46V 0.28 deleterious(0.01) possibly_damaging(0.685) TCGA-55-7907-01 10 105046872 105046872 G T INA Missense_Mutation p.L382F 0.21 deleterious(0) probably_damaging(1) TCGA-55-7907-01 10 105883606 105883606 C T SFR1 Silent p.S90S 0.32 TCGA-55-7907-01 10 106937921 106937921 C A SORCS3 Missense_Mutation p.H667N 0.33 deleterious(0.05) benign(0.028) TCGA-55-7907-01 10 106974319 106974319 G T SORCS3 Missense_Mutation p.R832L 0.26 tolerated(0.18) benign(0.023) TCGA-55-7907-01 10 111648353 111648353 C A XPNPEP1 Missense_Mutation p.G139V 0.19 deleterious(0) probably_damaging(0.98) TCGA-55-7907-01 10 112258062 112258062 G T DUSP5 Silent p.S61S 0.16 TCGA-55-7907-01 10 116698000 116698000 G T TRUB1 5'UTR 0.15 TCGA-55-7907-01 10 116698001 116698001 G T TRUB1 5'UTR 0.15 TCGA-55-7907-01 10 117061393 117061393 C T ATRNL1 Silent p.C886C 0.36 TCGA-55-7907-01 10 118310739 118310739 C A PNLIP Missense_Mutation p.L152I 0.21 deleterious(0) possibly_damaging(0.81) TCGA-55-7907-01 10 118404544 118404544 G T PNLIPRP2 Splice_Site p.X448_splice 0.28 TCGA-55-7907-01 10 121674267 121674267 G T SEC23IP Missense_Mutation p.L446F 0.36 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 10 123263308 123263308 C T FGFR2 Missense_Mutation p.D480N 0.25 deleterious(0.01) probably_damaging(0.994) TCGA-55-7907-01 10 129846042 129846042 G T PTPRE Missense_Mutation p.R75M 0.21 deleterious(0.01) possibly_damaging(0.838) TCGA-55-7907-01 10 134230696 134230696 G T PWWP2B 3'UTR 0.38 TCGA-55-7907-01 10 134664626 134664626 C A TTC40 Missense_Mutation p.G1920C 0.29 deleterious(0.02) probably_damaging(0.951) TCGA-55-7907-01 10 135440114 135440114 T A FRG2B Nonsense_Mutation p.K45* 0.24 TCGA-55-7907-01 10 13735910 13735910 G A FRMD4A Silent p.L369L 0.36 TCGA-55-7907-01 10 14996056 14996056 C G DCLRE1C 5'Flank 0.43 TCGA-55-7907-01 10 15317910 15317910 C A FAM171A1 Missense_Mutation p.R121L 0.17 deleterious(0) probably_damaging(0.965) TCGA-55-7907-01 10 15760770 15760770 G C ITGA8 Missense_Mutation p.T113S 0.16 tolerated(1) benign(0.007) TCGA-55-7907-01 10 25883266 25883266 G T GPR158 Silent p.L646L 0.31 TCGA-55-7907-01 10 26417319 26417319 G T MYO3A Splice_Site p.X705_splice 0.12 TCGA-55-7907-01 10 26880246 26880246 A G LINC00264 RNA 0.11 TCGA-55-7907-01 10 29812817 29812817 T A SVIL Missense_Mutation p.Y909F 0.15 tolerated_low_confidence(0.5) benign(0.002) TCGA-55-7907-01 10 32150432 32150432 C G ARHGAP12 Missense_Mutation p.R280P 0.16 deleterious(0) probably_damaging(1) TCGA-55-7907-01 10 33486617 33486617 T A NRP1 Missense_Mutation p.T629S 0.20 tolerated(0.27) benign(0.408) TCGA-55-7907-01 10 50121979 50121979 G T LRRC18 Missense_Mutation p.N74K 0.09 tolerated(0.34) benign(0.1) TCGA-55-7907-01 10 50574416 50574416 C G DRGX Silent p.L184L 0.20 TCGA-55-7907-01 10 50827924 50827924 C A CHAT Missense_Mutation p.Q181K 0.22 tolerated(0.86) benign(0.001) TCGA-55-7907-01 10 54053613 54053613 G T PRKG1 Missense_Mutation p.D672Y 0.31 deleterious(0) possibly_damaging(0.862) TCGA-55-7907-01 10 5416097 5416098 - A UCN3 Frame_Shift_Ins p.A140Gfs*? 0.23 TCGA-55-7907-01 10 54531325 54531325 G T MBL2 Missense_Mutation p.T24N 0.45 tolerated(0.18) benign(0.005) TCGA-55-7907-01 10 55566680 55566680 G T PCDH15 Missense_Mutation p.P1569T 0.34 deleterious_low_confidence(0.01) benign(0.115) TCGA-55-7907-01 10 60573602 60573602 T C BICC1 Missense_Mutation p.S797P 0.29 tolerated(0.07) benign(0.025) TCGA-55-7907-01 10 61007308 61007308 G T FAM13C 3'UTR 0.38 TCGA-55-7907-01 10 64382906 64382906 C A ZNF365 Missense_Mutation p.S342Y 0.33 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-55-7907-01 10 64382909 64382909 A T ZNF365 Missense_Mutation p.H343L 0.30 deleterious_low_confidence(0.04) benign(0.003) TCGA-55-7907-01 10 71020921 71020921 A C HKDC1 Missense_Mutation p.Y748S 0.19 deleterious(0) probably_damaging(1) TCGA-55-7907-01 10 74890529 74890529 G A NUDT13 Silent p.L309L 0.10 TCGA-55-7907-01 10 78868308 78868308 G T KCNMA1 Missense_Mutation p.P385H 0.35 deleterious(0) probably_damaging(1) TCGA-55-7907-01 10 79576327 79576327 C A DLG5 Missense_Mutation p.G1336V 0.24 deleterious(0.01) probably_damaging(1) TCGA-55-7907-01 10 79613233 79613233 C A DLG5 Missense_Mutation p.R248M 0.23 deleterious(0) possibly_damaging(0.907) TCGA-55-7907-01 10 8006747 8006747 G T TAF3 Missense_Mutation p.R425I 0.39 deleterious(0) possibly_damaging(0.67) TCGA-55-7907-01 10 81930597 81930597 T A ANXA11 Missense_Mutation p.T44S 0.26 tolerated(0.9) unknown(0) TCGA-55-7907-01 10 88696877 88696877 G T MMRN2 Missense_Mutation p.P825T 0.17 deleterious(0.05) benign(0.434) TCGA-55-7907-01 10 90974578 90974578 C A LIPA 3'UTR 0.20 TCGA-55-7907-01 10 91222194 91222194 C A SLC16A12 Missense_Mutation p.G48C 0.25 deleterious(0) probably_damaging(1) TCGA-55-7907-01 10 91497935 91497935 C G KIF20B Missense_Mutation p.L1073V 0.29 tolerated(0.25) probably_damaging(0.971) TCGA-55-7907-01 10 92508793 92508793 C A HTR7 Missense_Mutation p.E366D 0.23 tolerated(0.14) possibly_damaging(0.824) TCGA-55-7907-01 10 94620 94620 C A TUBB8 Missense_Mutation p.G71V 0.26 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-55-7907-01 10 94837101 94837101 A G CYP26A1 3'UTR 0.25 TCGA-55-7907-01 10 96058414 96058414 T A PLCE1 Missense_Mutation p.Y1816N 0.22 deleterious(0) probably_damaging(1) TCGA-55-7907-01 10 97373523 97373523 G A ALDH18A1 Silent p.I633I 0.29 TCGA-55-7907-01 11 102562575 102562575 C G MMP27 Missense_Mutation p.K488N 0.36 tolerated_low_confidence(0.07) benign(0.035) TCGA-55-7907-01 11 102575398 102575398 C A MMP27 Nonsense_Mutation p.G71* 0.13 TCGA-55-7907-01 11 102709892 102709892 C A MMP3 Missense_Mutation p.V340L 0.23 tolerated(0.94) benign(0.006) TCGA-55-7907-01 11 102712964 102712964 G T MMP3 Silent p.A182A 0.30 TCGA-55-7907-01 11 105850454 105850454 G C GRIA4 Silent p.S899S 0.23 TCGA-55-7907-01 11 107224297 107224297 C - CWF19L2 Frame_Shift_Del p.D680Tfs*13 0.22 TCGA-55-7907-01 11 10827457 10827457 C G EIF4G2 Missense_Mutation p.R82T 0.28 deleterious(0) probably_damaging(0.994) TCGA-55-7907-01 11 108382214 108382214 T A EXPH5 Silent p.L1340L 0.47 TCGA-55-7907-01 11 113111555 113111555 A G NCAM1 Intron 0.14 TCGA-55-7907-01 11 113644334 113644334 C A ZW10 Missense_Mutation p.D19Y 0.14 deleterious(0) probably_damaging(0.986) TCGA-55-7907-01 11 114401460 114401460 G T NXPE1 5'UTR 0.34 TCGA-55-7907-01 11 116628652 116628652 C A BUD13 Missense_Mutation p.R505L 0.37 deleterious(0) probably_damaging(0.963) TCGA-55-7907-01 11 117389215 117389215 G T DSCAML1 Silent p.G552G 0.15 TCGA-55-7907-01 11 118083145 118083145 G C AMICA1 Missense_Mutation p.L59V 0.26 tolerated(0.17) benign(0.026) TCGA-55-7907-01 11 118498054 118498054 C - PHLDB1 Frame_Shift_Del p.P173Hfs*18 0.31 TCGA-55-7907-01 11 120008148 120008148 G A TRIM29 Missense_Mutation p.H198Y 0.37 deleterious(0) probably_damaging(0.998) TCGA-55-7907-01 11 120097704 120097704 A T OAF Missense_Mutation p.Q182H 0.43 tolerated(0.1) benign(0.01) TCGA-55-7907-01 11 120827647 120827647 G T GRIK4 Missense_Mutation p.C620F 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-55-7907-01 11 120852872 120852872 T A GRIK4 Missense_Mutation p.V818E 0.30 deleterious(0) benign(0.299) TCGA-55-7907-01 11 123508911 123508911 C A SCN3B Missense_Mutation p.E189D 0.22 tolerated(0.12) benign(0.151) TCGA-55-7907-01 11 123900510 123900510 C T OR10G8 Missense_Mutation p.L61F 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 11 124847487 124847487 G T CCDC15 Missense_Mutation p.M248I 0.31 tolerated(0.26) benign(0.012) TCGA-55-7907-01 11 129754773 129754773 C A NFRKB Silent p.T228T 0.41 TCGA-55-7907-01 11 1316942 1316942 G A TOLLIP Missense_Mutation p.A39V 0.40 tolerated(0.11) benign(0.054) TCGA-55-7907-01 11 133714491 133714491 G C SPATA19 Missense_Mutation p.I60M 0.08 tolerated(0.1) benign(0.019) TCGA-55-7907-01 11 133790145 133790145 C T IGSF9B Missense_Mutation p.G1159S 0.21 tolerated_low_confidence(0.79) benign(0.012) TCGA-55-7907-01 11 17553016 17553016 C G USH1C Missense_Mutation p.D60H 0.43 deleterious(0.01) probably_damaging(0.98) TCGA-55-7907-01 11 18194994 18194994 A G MRGPRX4 Missense_Mutation p.Y64C 0.15 deleterious(0) probably_damaging(1) TCGA-55-7907-01 11 18739579 18739579 G T IGSF22 Missense_Mutation p.T291N 0.18 tolerated(0.08) probably_damaging(0.99) TCGA-55-7907-01 11 18754793 18754793 C A PTPN5 Nonsense_Mutation p.E403* 0.30 TCGA-55-7907-01 11 20113751 20113751 G T NAV2 Splice_Site p.X1944_splice 0.28 TCGA-55-7907-01 11 2441587 2441587 G T TRPM5 Missense_Mutation p.P172T 0.33 tolerated(0.11) possibly_damaging(0.474) TCGA-55-7907-01 11 26582746 26582746 G A MUC15 Missense_Mutation p.P318S 0.09 deleterious(0.03) probably_damaging(0.932) TCGA-55-7907-01 11 27016026 27016026 G T FIBIN 5'UTR 0.23 TCGA-55-7907-01 11 281085 281085 G C NLRP6 Missense_Mutation p.E451Q 0.30 deleterious(0.02) benign(0.422) TCGA-55-7907-01 11 30033752 30033752 A T KCNA4 Silent p.P158P 0.10 TCGA-55-7907-01 11 309045 309045 C T IFITM2 Silent p.T93T 0.11 TCGA-55-7907-01 11 31086068 31086068 C T DCDC1 Missense_Mutation p.V847I 0.34 deleterious(0.02) possibly_damaging(0.893) TCGA-55-7907-01 11 31128351 31128351 C A DCDC1 Missense_Mutation p.A582S 0.09 tolerated(0.46) benign(0.445) TCGA-55-7907-01 11 31671690 31671690 G T ELP4 Missense_Mutation p.R355L 0.11 deleterious(0.01) possibly_damaging(0.878) TCGA-55-7907-01 11 33667548 33667548 G T KIAA1549L Missense_Mutation p.R1612L 0.18 deleterious(0.01) probably_damaging(0.977) TCGA-55-7907-01 11 33777464 33777464 G A FBXO3 Silent p.V177V 0.07 TCGA-55-7907-01 11 34129826 34129826 A G NAT10 Silent p.V18V 0.26 TCGA-55-7907-01 11 3430124 3430124 C A TSSC2 RNA 0.26 TCGA-55-7907-01 11 35496271 35496271 G T PAMR1 Missense_Mutation p.A134D 0.25 tolerated(0.28) benign(0.421) TCGA-55-7907-01 11 36594961 36594961 G T RAG1 Missense_Mutation p.R36I 0.23 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-55-7907-01 11 43423014 43423014 G T TTC17 Missense_Mutation p.R413L 0.18 tolerated(0.11) benign(0.007) TCGA-55-7907-01 11 4470617 4470617 G T OR52K2 Missense_Mutation p.L16F 0.31 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 11 47282960 47282960 A T NR1H3 Missense_Mutation p.Q223L 0.21 deleterious(0.05) benign(0.001) TCGA-55-7907-01 11 47312232 47312232 G T MADD Missense_Mutation p.G1076W 0.16 deleterious(0.02) benign(0) TCGA-55-7907-01 11 4825366 4825366 G T OR52R1 Missense_Mutation p.P82H 0.27 deleterious(0) probably_damaging(1) TCGA-55-7907-01 11 4944844 4944844 G T OR51G1 Silent p.T242T 0.17 TCGA-55-7907-01 11 5012612 5012612 G T MMP26 Missense_Mutation p.G161C 0.33 tolerated(0.23) benign(0.005) TCGA-55-7907-01 11 5254093 5254093 A T HBD 3'UTR 0.30 TCGA-55-7907-01 11 5364143 5364143 T C OR51B5 Missense_Mutation p.I204M 0.38 tolerated(0.15) benign(0.06) TCGA-55-7907-01 11 5443647 5443647 C A OR51Q1 Missense_Mutation p.L73M 0.18 tolerated(0.18) probably_damaging(0.999) TCGA-55-7907-01 11 5474794 5474794 T A OR51I2 Missense_Mutation p.W26R 0.23 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 11 5474804 5474804 G A OR51I2 Missense_Mutation p.G29E 0.23 deleterious(0) possibly_damaging(0.827) TCGA-55-7907-01 11 55135425 55135425 G A OR4A15 Silent p.L22L 0.15 TCGA-55-7907-01 11 55136164 55136164 G T OR4A15 Missense_Mutation p.A269S 0.32 tolerated_low_confidence(0.78) benign(0.162) TCGA-55-7907-01 11 55321886 55321886 G T OR4C15 Missense_Mutation p.C35F 0.10 deleterious_low_confidence(0.01) benign(0.063) TCGA-55-7907-01 11 55433503 55433503 G A OR4C6 Silent p.L287L 0.32 TCGA-55-7907-01 11 55540930 55540930 G C OR5D13 Missense_Mutation p.R6T 0.13 tolerated(0.33) benign(0.001) TCGA-55-7907-01 11 55653630 55653630 G T TRIM51 Missense_Mutation p.W148L 0.11 tolerated(0.06) benign(0.013) TCGA-55-7907-01 11 55653631 55653631 G A TRIM51 Nonsense_Mutation p.W148* 0.11 TCGA-55-7907-01 11 55798346 55798346 G T OR5AS1 Missense_Mutation p.S151I 0.08 tolerated(0.43) benign(0.032) TCGA-55-7907-01 11 55798392 55798392 G T OR5AS1 Silent p.L166L 0.08 TCGA-55-7907-01 11 55798567 55798567 G T OR5AS1 Missense_Mutation p.V225L 0.34 deleterious(0) possibly_damaging(0.544) TCGA-55-7907-01 11 56020058 56020058 C G OR5T3 Missense_Mutation p.A128G 0.12 deleterious(0) benign(0.062) TCGA-55-7907-01 11 56127745 56127745 G T OR8J1 Missense_Mutation p.R8I 0.30 tolerated(0.41) benign(0.015) TCGA-55-7907-01 11 56237279 56237279 C A OR5M3 Missense_Mutation p.R232M 0.17 deleterious(0) probably_damaging(0.996) TCGA-55-7907-01 11 57114087 57114087 G A P2RX3 Silent p.K63K 0.22 TCGA-55-7907-01 11 5776462 5776462 C T OR52N4 Silent p.L164L 0.36 TCGA-55-7907-01 11 58034486 58034486 G T OR10W1 Missense_Mutation p.A282D 0.32 deleterious(0) benign(0.159) TCGA-55-7907-01 11 58190537 58190537 C A OR5B2 Silent p.L66L 0.39 TCGA-55-7907-01 11 58477382 58477382 G TT GLYAT Frame_Shift_Ins p.H250Kfs*21 0.14 TCGA-55-7907-01 11 59811111 59811111 C G OOSP2 Missense_Mutation p.I78M 0.11 deleterious(0.05) possibly_damaging(0.66) TCGA-55-7907-01 11 59828659 59828659 C G MS4A3 Missense_Mutation p.A9G 0.39 tolerated(0.19) benign(0.045) TCGA-55-7907-01 11 6048549 6048549 C A OR56A1 Missense_Mutation p.R129L 0.18 deleterious(0) benign(0.06) TCGA-55-7907-01 11 60886854 60886854 C A CD5 Silent p.L204L 0.09 TCGA-55-7907-01 11 61026292 61026292 G A VWCE Missense_Mutation p.P908L 0.32 deleterious_low_confidence(0.03) benign(0.004) TCGA-55-7907-01 11 61026293 61026293 G A VWCE Missense_Mutation p.P908S 0.32 deleterious_low_confidence(0.01) benign(0.116) TCGA-55-7907-01 11 61026361 61026361 G A VWCE Missense_Mutation p.S885F 0.21 tolerated_low_confidence(0.06) benign(0.003) TCGA-55-7907-01 11 61725787 61725787 C A BEST1 Intron 0.17 TCGA-55-7907-01 11 6261363 6261363 G T CNGA4 Missense_Mutation p.W113C 0.14 tolerated(0.18) possibly_damaging(0.621) TCGA-55-7907-01 11 6262679 6262679 C A CNGA4 Silent p.I312I 0.15 TCGA-55-7907-01 11 63988070 63988070 G T FERMT3 Missense_Mutation p.A496S 0.46 tolerated(0.76) benign(0.105) TCGA-55-7907-01 11 66191339 66191339 G T NPAS4 Missense_Mutation p.L326F 0.33 deleterious(0.01) probably_damaging(0.991) TCGA-55-7907-01 11 66358319 66358319 C A CCDC87 Missense_Mutation p.R723L 0.12 tolerated(0.17) benign(0.075) TCGA-55-7907-01 11 68777350 68777350 C T MRGPRF Nonsense_Mutation p.W7* 0.25 TCGA-55-7907-01 11 6891001 6891001 C A OR10A2 Missense_Mutation p.L6M 0.15 deleterious(0.03) possibly_damaging(0.841) TCGA-55-7907-01 11 6891503 6891503 G A OR10A2 Missense_Mutation p.R173K 0.05 tolerated(1) benign(0.002) TCGA-55-7907-01 11 6898039 6898039 C A OR10A4 Missense_Mutation p.S54Y 0.20 deleterious(0) possibly_damaging(0.781) TCGA-55-7907-01 11 7021487 7021487 C A ZNF214 Missense_Mutation p.G476V 0.18 deleterious(0) probably_damaging(1) TCGA-55-7907-01 11 7110371 7110372 - G RBMXL2 Frame_Shift_Ins p.K9Efs*49 0.25 TCGA-55-7907-01 11 72290346 72290346 G T PDE2A Missense_Mutation p.L780I 0.16 tolerated(0.22) possibly_damaging(0.529) TCGA-55-7907-01 11 73759293 73759293 C A C2CD3 Missense_Mutation p.A1818S 0.36 tolerated(0.55) benign(0.009) TCGA-55-7907-01 11 76248853 76248853 G A C11orf30 Missense_Mutation p.E792K 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.899) TCGA-55-7907-01 11 76915168 76915168 G A MYO7A Missense_Mutation p.V1792I 0.23 tolerated(0.07) benign(0.053) TCGA-55-7907-01 11 76922953 76922953 A T MYO7A Missense_Mutation p.T2109S 0.21 deleterious(0) benign(0.1) TCGA-55-7907-01 11 77690143 77690143 G C INTS4 Missense_Mutation p.H124D 0.25 deleterious(0.02) benign(0.312) TCGA-55-7907-01 11 788606 788606 G C CEND1 5'UTR 0.40 TCGA-55-7907-01 11 82644525 82644525 G C C11orf82 Missense_Mutation p.E715D 0.15 tolerated(0.1) benign(0.006) TCGA-55-7907-01 11 82644895 82644895 G T C11orf82 Missense_Mutation p.V839L 0.12 tolerated(0.14) benign(0.002) TCGA-55-7907-01 11 82698584 82698584 C G RAB30 Intron 0.41 TCGA-55-7907-01 11 85375702 85375702 A T CREBZF Missense_Mutation p.V73E 0.21 tolerated_low_confidence(0.2) benign(0) TCGA-55-7907-01 11 85396236 85396236 C A CCDC89 Missense_Mutation p.R313L 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-55-7907-01 11 88330451 88330451 G C GRM5 Missense_Mutation p.D488E 0.31 tolerated(0.12) probably_damaging(0.942) TCGA-55-7907-01 11 89177378 89177378 C A NOX4 Silent p.L124L 0.14 TCGA-55-7907-01 11 92533858 92533858 G T FAT3 Missense_Mutation p.R2560L 0.19 probably_damaging(1) TCGA-55-7907-01 11 92590415 92590415 G T FAT3 Nonsense_Mutation p.E3801* 0.38 TCGA-55-7907-01 11 92715503 92715503 C A MTNR1B 3'UTR 0.25 TCGA-55-7907-01 11 95555060 95555060 G C CEP57 Missense_Mutation p.R242T 0.40 deleterious(0) benign(0.409) TCGA-55-7907-01 12 100926248 100926248 G C NR1H4 Missense_Mutation p.R163T 0.14 deleterious(0) probably_damaging(0.989) TCGA-55-7907-01 12 100926300 100926300 G A NR1H4 Silent p.V180V 0.12 TCGA-55-7907-01 12 10271056 10271056 C A CLEC7A 3'UTR 0.18 TCGA-55-7907-01 12 10319353 10319353 G C OLR1 Missense_Mutation p.L128V 0.32 tolerated(0.27) benign(0.139) TCGA-55-7907-01 12 108604034 108604034 C A WSCD2 Missense_Mutation p.R212S 0.33 deleterious(0.04) benign(0.007) TCGA-55-7907-01 12 109547803 109547803 G T UNG 3'UTR 0.28 TCGA-55-7907-01 12 10955157 10955157 C A TAS2R7 Missense_Mutation p.V5L 0.08 tolerated(0.64) benign(0.001) TCGA-55-7907-01 12 109847359 109847359 C A MYO1H Intron 0.28 TCGA-55-7907-01 12 111748219 111748219 G T CUX2 Missense_Mutation p.G545W 0.16 deleterious(0) benign(0.293) TCGA-55-7907-01 12 113448195 113448195 G T OAS2 Missense_Mutation p.G689V 0.32 deleterious(0.01) possibly_damaging(0.729) TCGA-55-7907-01 12 11546699 11546699 C T PRB2 Missense_Mutation p.G105R 0.13 deleterious(0) unknown(0) TCGA-55-7907-01 12 123794254 123794254 T G SBNO1 Intron 0.23 TCGA-55-7907-01 12 124172603 124172603 C T TCTN2 Missense_Mutation p.P257L 0.17 deleterious(0.04) benign(0.021) TCGA-55-7907-01 12 124403315 124403315 C A DNAH10 Silent p.I3657I 0.34 TCGA-55-7907-01 12 13061883 13061883 C T GPRC5A Missense_Mutation p.P234S 0.40 tolerated(0.55) benign(0.018) TCGA-55-7907-01 12 130648479 130648479 C A FZD10 Missense_Mutation p.T331K 0.19 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 12 131593298 131593298 A G GPR133 Silent p.L639L 0.30 TCGA-55-7907-01 12 132262653 132262653 C T SFSWAP Missense_Mutation p.P729L 0.13 tolerated_low_confidence(0.2) possibly_damaging(0.851) TCGA-55-7907-01 12 133212492 133212492 T C POLE Missense_Mutation p.I1933V 0.33 tolerated(1) benign(0) TCGA-55-7907-01 12 133225973 133225973 C A POLE Silent p.R1308R 0.26 TCGA-55-7907-01 12 133306433 133306433 C G ANKLE2 Missense_Mutation p.R772T 0.21 tolerated(0.45) benign(0.013) TCGA-55-7907-01 12 18446839 18446839 T A PIK3C2G Missense_Mutation p.N308K 0.44 deleterious(0.05) benign(0.073) TCGA-55-7907-01 12 20868121 20868121 G C SLCO1C1 Missense_Mutation p.G193A 0.35 deleterious(0) probably_damaging(0.992) TCGA-55-7907-01 12 21355454 21355454 G T SLCO1B1 Nonsense_Mutation p.G389* 0.19 TCGA-55-7907-01 12 21355455 21355455 G T SLCO1B1 Missense_Mutation p.G389V 0.24 deleterious(0) probably_damaging(0.982) TCGA-55-7907-01 12 21355570 21355570 C - SLCO1B1 Frame_Shift_Del p.F427Lfs*12 0.08 TCGA-55-7907-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.31 deleterious(0.04) probably_damaging(0.993) TCGA-55-7907-01 12 2800282 2800282 G A CACNA1C Missense_Mutation p.E2160K 0.59 tolerated_low_confidence(0.07) benign(0.038) TCGA-55-7907-01 12 32369271 32369271 G A BICD1 Missense_Mutation p.E102K 0.44 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 12 40076933 40076933 G A C12orf40 Missense_Mutation p.E403K 0.36 tolerated(0.09) possibly_damaging(0.779) TCGA-55-7907-01 12 43771274 43771274 C A ADAMTS20 Missense_Mutation p.R1630L 0.25 tolerated(0.56) benign(0.005) TCGA-55-7907-01 12 4385191 4385191 C A CCND2 Nonsense_Mutation p.C72* 0.11 TCGA-55-7907-01 12 43925971 43925971 C A ADAMTS20 Nonsense_Mutation p.E161* 0.33 TCGA-55-7907-01 12 45751133 45751133 G C ANO6 Missense_Mutation p.M329I 0.26 deleterious(0.02) probably_damaging(0.93) TCGA-55-7907-01 12 4598990 4598990 G C C12orf4 Missense_Mutation p.L548V 0.42 tolerated(0.2) possibly_damaging(0.779) TCGA-55-7907-01 12 48381440 48381440 C A COL2A1 Missense_Mutation p.R392L 0.40 unknown(0) TCGA-55-7907-01 12 49088075 49088075 T A CCNT1 Missense_Mutation p.S308C 0.22 deleterious(0) possibly_damaging(0.599) TCGA-55-7907-01 12 49438017 49438017 C A KMT2D Silent p.A1718A 0.31 TCGA-55-7907-01 12 49742871 49742871 G T DNAJC22 Silent p.V72V 0.32 TCGA-55-7907-01 12 49951519 49951519 C T KCNH3 Missense_Mutation p.P1012L 0.20 tolerated_low_confidence(0.17) benign(0.05) TCGA-55-7907-01 12 51492610 51492610 G T TFCP2 Missense_Mutation p.S456R 0.16 tolerated(0.41) benign(0.007) TCGA-55-7907-01 12 51590707 51590707 T G POU6F1 5'UTR 0.27 TCGA-55-7907-01 12 52912779 52912779 C G KRT5 Missense_Mutation p.D241H 0.14 deleterious(0) probably_damaging(0.977) TCGA-55-7907-01 12 53225306 53225306 G T KRT79 Silent p.L194L 0.09 TCGA-55-7907-01 12 53911046 53911046 G A ATF7 Missense_Mutation p.R443C 0.16 deleterious(0) probably_damaging(0.973) TCGA-55-7907-01 12 54369071 54369071 G T HOXC11 Silent p.L263L 0.09 TCGA-55-7907-01 12 54894400 54894400 G T NCKAP1L Missense_Mutation p.M99I 0.17 tolerated(0.2) benign(0.053) TCGA-55-7907-01 12 54968998 54968998 G T PDE1B Missense_Mutation p.R394L 0.24 tolerated(0.13) benign(0.402) TCGA-55-7907-01 12 5604066 5604066 C T NTF3 Missense_Mutation p.S242L 0.17 tolerated(0.24) probably_damaging(0.999) TCGA-55-7907-01 12 56075848 56075848 G C METTL7B Missense_Mutation p.E104Q 0.44 tolerated(0.46) benign(0.144) TCGA-55-7907-01 12 56642588 56642588 A T ANKRD52 Silent p.A553A 0.37 TCGA-55-7907-01 12 56737841 56737841 C A STAT2 Silent p.L727L 0.64 TCGA-55-7907-01 12 56815550 56815550 C A TIMELESS Nonsense_Mutation p.E896* 0.17 TCGA-55-7907-01 12 57435270 57435270 C A MYO1A Silent p.G370G 0.12 TCGA-55-7907-01 12 57971847 57971847 C A KIF5A Missense_Mutation p.T806K 0.26 tolerated(0.33) possibly_damaging(0.683) TCGA-55-7907-01 12 62715334 62715334 G C USP15 Missense_Mutation p.E189Q 0.25 deleterious(0.01) possibly_damaging(0.638) TCGA-55-7907-01 12 6344465 6344465 G T CD9 Missense_Mutation p.R140L 0.42 tolerated(0.08) possibly_damaging(0.872) TCGA-55-7907-01 12 66703861 66703861 G A HELB Missense_Mutation p.V385M 0.19 deleterious(0) probably_damaging(0.962) TCGA-55-7907-01 12 66786519 66786519 G A GRIP1 Missense_Mutation p.A684V 0.14 deleterious(0) probably_damaging(0.959) TCGA-55-7907-01 12 68549098 68549098 G C IFNG 3'UTR 0.40 TCGA-55-7907-01 12 69090597 69090597 A C NUP107 Splice_Site p.X150_splice 0.46 TCGA-55-7907-01 12 6925297 6925297 C A CD4 Missense_Mutation p.T228K 0.14 tolerated(0.54) benign(0.002) TCGA-55-7907-01 12 71003085 71003085 G T PTPRB Missense_Mutation p.T248N 0.26 tolerated_low_confidence(0.51) benign(0.003) TCGA-55-7907-01 12 72094749 72094749 G T TMEM19 Missense_Mutation p.A329S 0.32 tolerated(0.17) benign(0.364) TCGA-55-7907-01 12 76444424 76444424 C A NAP1L1 Missense_Mutation p.A316S 0.48 tolerated(0.75) benign(0.01) TCGA-55-7907-01 12 78400474 78400474 G T NAV3 Nonsense_Mutation p.E386* 0.13 TCGA-55-7907-01 12 78401054 78401054 G T NAV3 Missense_Mutation p.C579F 0.22 tolerated(0.23) benign(0.001) TCGA-55-7907-01 12 7972168 7972168 C A SLC2A14 Silent p.V350V 0.47 TCGA-55-7907-01 12 80214888 80214888 T C PPP1R12A Missense_Mutation p.D309G 0.21 deleterious(0.02) benign(0.069) TCGA-55-7907-01 12 8075439 8075439 C A SLC2A3 Missense_Mutation p.G417V 0.40 deleterious(0) probably_damaging(0.982) TCGA-55-7907-01 12 81111177 81111177 C A MYF5 Missense_Mutation p.T112N 0.35 tolerated(0.05) benign(0.174) TCGA-55-7907-01 12 81472085 81472085 C T ACSS3 Silent p.Y62Y 0.30 TCGA-55-7907-01 12 85279297 85279298 - A SLC6A15 Frame_Shift_Ins p.W164Lfs*35 0.09 TCGA-55-7907-01 12 9312562 9312562 G A PZP Nonsense_Mutation p.R1037* 0.35 TCGA-55-7907-01 12 95535258 95535258 C A FGD6 Missense_Mutation p.D915Y 0.18 deleterious(0) possibly_damaging(0.903) TCGA-55-7907-01 13 102235682 102235682 C A ITGBL1 Silent p.R282R 0.20 TCGA-55-7907-01 13 102366809 102366809 G T ITGBL1 Missense_Mutation p.C434F 0.23 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 13 110814614 110814614 G T COL4A1 Nonsense_Mutation p.Y1475* 0.25 TCGA-55-7907-01 13 111111202 111111202 G T COL4A2 Missense_Mutation p.G506V 0.34 probably_damaging(1) TCGA-55-7907-01 13 113741727 113741727 G T MCF2L Missense_Mutation p.G851V 0.47 deleterious(0) possibly_damaging(0.907) TCGA-55-7907-01 13 23913627 23913627 C A SACS Missense_Mutation p.R1463I 0.23 probably_damaging(0.996) TCGA-55-7907-01 13 23914776 23914776 G T SACS Nonsense_Mutation p.S1080* 0.23 TCGA-55-7907-01 13 25406056 25406056 G T RNF17 Nonsense_Mutation p.E808* 0.33 TCGA-55-7907-01 13 25419098 25419098 G T RNF17 Splice_Site p.X995_splice 0.23 TCGA-55-7907-01 13 25453427 25453427 C A RNF17 3'UTR 0.31 TCGA-55-7907-01 13 26957008 26957008 G A CDK8 Missense_Mutation p.A172T 0.29 deleterious(0.01) benign(0.396) TCGA-55-7907-01 13 28908231 28908231 C - FLT1 Frame_Shift_Del p.V842Ffs*19 0.20 TCGA-55-7907-01 13 29608058 29608058 C A MTUS2 Missense_Mutation p.P758T 0.22 deleterious(0) probably_damaging(1) TCGA-55-7907-01 13 32972857 32972857 G C BRCA2 Missense_Mutation p.E3403Q 0.25 deleterious(0.04) possibly_damaging(0.591) TCGA-55-7907-01 13 38211604 38211604 C A TRPC4 Missense_Mutation p.K795N 0.16 tolerated(0.2) benign(0.005) TCGA-55-7907-01 13 40175066 40175066 G A LHFP Silent p.L96L 0.27 TCGA-55-7907-01 13 41134033 41134033 G T FOXO1 Missense_Mutation p.S532Y 0.27 tolerated(1) benign(0.084) TCGA-55-7907-01 13 46946337 46946337 G A KIAA0226L Missense_Mutation p.P92S 0.23 tolerated(0.97) benign(0.004) TCGA-55-7907-01 13 47408940 47408940 T A HTR2A 3'UTR 0.27 TCGA-55-7907-01 13 49712912 49712912 G T FNDC3A Missense_Mutation p.A264S 0.35 tolerated(0.72) benign(0.001) TCGA-55-7907-01 13 58207404 58207404 G C PCDH17 Missense_Mutation p.V242L 0.29 tolerated(0.08) benign(0.012) TCGA-55-7907-01 13 58209020 58209020 G T PCDH17 Missense_Mutation p.M780I 0.27 tolerated(0.39) benign(0.017) TCGA-55-7907-01 13 60240873 60240873 G A DIAPH3 Missense_Mutation p.H1143Y 0.32 tolerated_low_confidence(0.23) benign(0.105) TCGA-55-7907-01 13 61985470 61985470 C T PCDH20 Missense_Mutation p.R921K 0.11 tolerated(0.67) benign(0.001) TCGA-55-7907-01 13 70535443 70535443 T C KLHL1 Missense_Mutation p.T272A 0.35 deleterious(0) probably_damaging(0.983) TCGA-55-7907-01 13 77817201 77817201 T A MYCBP2 Missense_Mutation p.E836D 0.23 benign(0.317) TCGA-55-7907-01 13 78335215 78335215 C G SLAIN1 Missense_Mutation p.P392R 0.12 deleterious(0.04) probably_damaging(0.972) TCGA-55-7907-01 13 84454630 84454630 C G SLITRK1 Missense_Mutation p.S338T 0.20 tolerated(0.3) benign(0.001) TCGA-55-7907-01 13 84455198 84455198 C - SLITRK1 Frame_Shift_Del p.A149Pfs*5 0.21 TCGA-55-7907-01 13 92345607 92345607 C A GPC5 Missense_Mutation p.N164K 0.16 deleterious(0.02) possibly_damaging(0.869) TCGA-55-7907-01 13 96293773 96293773 G T DZIP1 Missense_Mutation p.Q125K 0.18 deleterious(0) probably_damaging(1) TCGA-55-7907-01 13 97485369 97485369 A T HS6ST3 Missense_Mutation p.R445W 0.33 deleterious_low_confidence(0) possibly_damaging(0.747) TCGA-55-7907-01 13 97640046 97640046 A G OXGR1 5'UTR 0.27 TCGA-55-7907-01 13 98043775 98043775 A T MBNL2 3'UTR 0.32 TCGA-55-7907-01 13 99092923 99092923 G T FARP1 Splice_Site p.X877_splice 0.12 TCGA-55-7907-01 14 101404570 101404570 G T SNORD113-5 RNA 0.29 TCGA-55-7907-01 14 101507763 101507763 G T MIR300 RNA 0.35 TCGA-55-7907-01 14 101526925 101526925 C A MIR496 RNA 0.28 TCGA-55-7907-01 14 102548771 102548771 G T HSP90AA1 Nonsense_Mutation p.S711* 0.50 TCGA-55-7907-01 14 106331436 106331436 G A IGHJ2 Missense_Mutation p.R9C 0.25 possibly_damaging(0.748) TCGA-55-7907-01 14 106552330 106552330 G T IGHV3-9 Missense_Mutation p.N103K 0.23 deleterious_low_confidence(0.02) benign(0.235) TCGA-55-7907-01 14 106877814 106877814 G A IGHV4-39 Silent p.Y60Y 0.31 TCGA-55-7907-01 14 107012965 107012965 C A IGHV3-49 Missense_Mutation p.E110D 0.26 deleterious_low_confidence(0.04) benign(0.006) TCGA-55-7907-01 14 107169997 107169997 C G IGHV1-69 Silent p.T95T 0.29 TCGA-55-7907-01 14 20249337 20249337 C A OR4M1 Missense_Mutation p.P286T 0.07 deleterious(0) probably_damaging(0.959) TCGA-55-7907-01 14 20295891 20295891 G A OR4N2 Missense_Mutation p.R95K 0.09 tolerated(0.87) benign(0.002) TCGA-55-7907-01 14 20444345 20444345 T G OR4K15 Missense_Mutation p.I223R 0.25 deleterious(0) probably_damaging(0.972) TCGA-55-7907-01 14 20612059 20612059 C T OR4N5 Silent p.L55L 0.22 TCGA-55-7907-01 14 20849739 20849739 C A TEP1 Nonsense_Mutation p.E1511* 0.25 TCGA-55-7907-01 14 20872851 20872851 C T TEP1 Silent p.A317A 0.33 TCGA-55-7907-01 14 21058504 21058504 C A RNASE12 Nonsense_Mutation p.E127* 0.29 TCGA-55-7907-01 14 21779997 21779997 G A RPGRIP1 Silent p.L315L 0.26 TCGA-55-7907-01 14 21852072 21852072 C T SUPT16H Silent p.L5L 0.30 TCGA-55-7907-01 14 21960676 21960676 G A TOX4 Missense_Mutation p.E301K 0.25 deleterious(0.03) possibly_damaging(0.76) TCGA-55-7907-01 14 22636677 22636677 A T TRAV30 Missense_Mutation p.S44C 0.31 possibly_damaging(0.819) TCGA-55-7907-01 14 22690135 22690135 C A TRAV35 Missense_Mutation p.Q32K 0.18 tolerated(0.06) possibly_damaging(0.745) TCGA-55-7907-01 14 23538785 23538785 C A ACIN1 Missense_Mutation p.R780I 0.28 benign(0.352) TCGA-55-7907-01 14 23547448 23547448 C T ACIN1 Missense_Mutation p.E737K 0.31 benign(0.092) TCGA-55-7907-01 14 23562726 23562726 G A ACIN1 Missense_Mutation p.H114Y 0.26 probably_damaging(0.968) TCGA-55-7907-01 14 23794441 23794441 C T PABPN1 Intron 0.24 TCGA-55-7907-01 14 23894032 23894032 C G MYH7 Missense_Mutation p.E875D 0.33 deleterious(0.03) possibly_damaging(0.856) TCGA-55-7907-01 14 24535820 24535820 C G LRRC16B Missense_Mutation p.P1213A 0.18 deleterious(0.01) unknown(0) TCGA-55-7907-01 14 24619987 24619987 G T RNF31 Missense_Mutation p.G460W 0.23 deleterious(0.02) benign(0.371) TCGA-55-7907-01 14 24798651 24798651 G C ADCY4 Missense_Mutation p.L436V 0.31 deleterious(0) probably_damaging(0.996) TCGA-55-7907-01 14 25042962 25042962 A G CTSG Missense_Mutation p.Y217H 0.25 tolerated(0.05) probably_damaging(1) TCGA-55-7907-01 14 30105689 30105689 G A PRKD1 Missense_Mutation p.P333S 0.29 tolerated(0.26) possibly_damaging(0.517) TCGA-55-7907-01 14 31066645 31066645 G T G2E3 Missense_Mutation p.G183V 0.23 deleterious(0) probably_damaging(1) TCGA-55-7907-01 14 31813206 31813206 T A HEATR5A Missense_Mutation p.N749Y 0.23 deleterious(0.01) benign(0.336) TCGA-55-7907-01 14 35780014 35780014 G C PSMA6 Missense_Mutation p.E108Q 0.42 deleterious(0.04) benign(0.03) TCGA-55-7907-01 14 39762580 39762580 G T CTAGE5 Nonsense_Mutation p.E169* 0.32 TCGA-55-7907-01 14 39900943 39900943 C T FBXO33 Missense_Mutation p.E142K 0.37 tolerated(0.08) benign(0.207) TCGA-55-7907-01 14 50301084 50301084 T C NEMF Missense_Mutation p.K220E 0.30 tolerated(0.54) benign(0.002) TCGA-55-7907-01 14 52495533 52495533 C A NID2 Missense_Mutation p.G813C 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 14 52734663 52734663 C A PTGDR Nonsense_Mutation p.S44* 0.30 TCGA-55-7907-01 14 55903622 55903622 C T TBPL2 Missense_Mutation p.E89K 0.23 tolerated_low_confidence(0.09) benign(0.025) TCGA-55-7907-01 14 59112634 59112634 G A DACT1 Silent p.K431K 0.23 TCGA-55-7907-01 14 60611705 60611705 G C DHRS7 Missense_Mutation p.I333M 0.07 tolerated_low_confidence(0.18) benign(0.097) TCGA-55-7907-01 14 63174517 63174517 A T KCNH5 Silent p.A892A 0.26 TCGA-55-7907-01 14 64520073 64520073 G C SYNE2 Missense_Mutation p.E3148Q 0.22 possibly_damaging(0.474) TCGA-55-7907-01 14 65252654 65252654 G A SPTB Missense_Mutation p.H1193Y 0.32 deleterious(0.01) possibly_damaging(0.855) TCGA-55-7907-01 14 68234553 68234553 T A ZFYVE26 Silent p.L1886L 0.25 TCGA-55-7907-01 14 70713356 70713356 T C ADAM21P1 RNA 0.10 TCGA-55-7907-01 14 70925238 70925238 A G ADAM21 Missense_Mutation p.H341R 0.29 deleterious(0) probably_damaging(0.914) TCGA-55-7907-01 14 70925698 70925698 C - ADAM21 Frame_Shift_Del p.C496Vfs*50 0.22 TCGA-55-7907-01 14 73718736 73718736 A G PAPLN Missense_Mutation p.Q258R 0.32 deleterious(0.04) benign(0.149) TCGA-55-7907-01 14 74061798 74061798 G C ACOT4 Missense_Mutation p.D236H 0.28 deleterious(0) probably_damaging(1) TCGA-55-7907-01 14 74763132 74763132 T A ABCD4 Missense_Mutation p.D149V 0.25 deleterious(0) probably_damaging(1) TCGA-55-7907-01 14 74995241 74995241 C A LTBP2 Missense_Mutation p.Q771H 0.12 tolerated(0.06) probably_damaging(0.998) TCGA-55-7907-01 14 75283738 75283738 C T YLPM1 Silent p.I1930I 0.37 TCGA-55-7907-01 14 75748078 75748078 A T FOS Missense_Mutation p.N365I 0.24 deleterious(0.01) probably_damaging(0.995) TCGA-55-7907-01 14 77710724 77710724 G T TMEM63C Silent p.V458V 0.33 TCGA-55-7907-01 14 77942235 77942236 GC - ISM2 Frame_Shift_Del p.R473Lfs*22 0.08 TCGA-55-7907-01 14 81609993 81609993 C A TSHR Silent p.R531R 0.26 TCGA-55-7907-01 14 81743600 81743600 G C STON2 Silent p.T685T 0.24 TCGA-55-7907-01 14 81864700 81864700 G T STON2 Silent p.A9A 0.26 TCGA-55-7907-01 14 90489400 90489400 G A TDP1 Intron 0.19 TCGA-55-7907-01 14 90870246 90870246 G T CALM1 Missense_Mutation p.M73I 0.17 deleterious_low_confidence(0.02) benign(0.408) TCGA-55-7907-01 14 93962774 93962774 C T UNC79 Silent p.L67L 0.09 TCGA-55-7907-01 14 99641033 99641033 C G BCL11B Missense_Mutation p.G714R 0.20 deleterious(0) benign(0.05) TCGA-55-7907-01 14 99641358 99641358 G A BCL11B Silent p.G605G 0.16 TCGA-55-7907-01 15 100514588 100514588 C A ADAMTS17 3'UTR 0.21 TCGA-55-7907-01 15 20193371 20193371 G T IGHV3OR15-7 5'Flank 0.27 TCGA-55-7907-01 15 22933576 22933576 A G CYFIP1 Silent p.L195L 0.33 TCGA-55-7907-01 15 24921406 24921406 G T NPAP1 Missense_Mutation p.R131L 0.06 tolerated(0.27) benign(0.074) TCGA-55-7907-01 15 24923500 24923500 C T NPAP1 Missense_Mutation p.P829L 0.15 tolerated(0.12) possibly_damaging(0.566) TCGA-55-7907-01 15 25432760 25432760 G T SNORD115-10 RNA 0.32 TCGA-55-7907-01 15 26825485 26825485 C T GABRB3 Silent p.R221R 0.17 TCGA-55-7907-01 15 27185199 27185199 A T GABRA5 Missense_Mutation p.E284D 0.26 tolerated(0.26) probably_damaging(0.997) TCGA-55-7907-01 15 27222262 27222262 G T GABRG3 Missense_Mutation p.R56I 0.14 tolerated(0.07) benign(0.425) TCGA-55-7907-01 15 27772703 27772703 G C GABRG3 Silent p.A330A 0.36 TCGA-55-7907-01 15 28358796 28358796 C A HERC2 Missense_Mutation p.A4648S 0.36 possibly_damaging(0.483) TCGA-55-7907-01 15 28632777 28632777 G T GOLGA8F Missense_Mutation p.G449W 0.14 deleterious(0.01) possibly_damaging(0.792) TCGA-55-7907-01 15 31294741 31294741 C T TRPM1 Missense_Mutation p.E1405K 0.27 tolerated_low_confidence(0.29) benign(0.002) TCGA-55-7907-01 15 33023329 33023329 C A GREM1 Silent p.P146P 0.32 TCGA-55-7907-01 15 33951980 33951980 G T RYR3 Missense_Mutation p.L1456F 0.21 probably_damaging(0.955) TCGA-55-7907-01 15 34110877 34110877 G A RYR3 Silent p.T3566T 0.38 TCGA-55-7907-01 15 34646724 34646724 C A NUTM1 Missense_Mutation p.P357T 0.38 tolerated(0.34) benign(0.141) TCGA-55-7907-01 15 34647219 34647219 C T NUTM1 Intron 0.38 TCGA-55-7907-01 15 35044701 35044701 G T GJD2 Missense_Mutation p.S315Y 0.17 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-55-7907-01 15 38243442 38243442 A T TMCO5A 3'UTR 0.12 TCGA-55-7907-01 15 39882765 39882765 G T THBS1 Missense_Mutation p.D732Y 0.33 deleterious(0) probably_damaging(0.996) TCGA-55-7907-01 15 39882766 39882766 A G THBS1 Missense_Mutation p.D732G 0.33 deleterious(0) probably_damaging(0.984) TCGA-55-7907-01 15 40750889 40750889 C T BAHD1 Missense_Mutation p.R76C 0.16 deleterious(0) probably_damaging(0.994) TCGA-55-7907-01 15 41387985 41387985 T C INO80 Silent p.T95T 0.16 TCGA-55-7907-01 15 42000361 42000361 G T MGA Nonsense_Mutation p.G794* 0.33 TCGA-55-7907-01 15 42436757 42436757 C G PLA2G4F Silent p.V622V 0.14 TCGA-55-7907-01 15 48718036 48718036 G T FBN1 Missense_Mutation p.H2410Q 0.11 benign(0.02) TCGA-55-7907-01 15 49284862 49284862 C A SECISBP2L Missense_Mutation p.G962V 0.14 deleterious(0) probably_damaging(1) TCGA-55-7907-01 15 49531417 49531417 G T GALK2 Splice_Site p.X120_splice 0.29 TCGA-55-7907-01 15 51855592 51855592 C A DMXL2 Missense_Mutation p.A185S 0.21 deleterious(0.01) possibly_damaging(0.61) TCGA-55-7907-01 15 53908067 53908067 T G WDR72 Missense_Mutation p.Q779P 0.17 tolerated(0.08) benign(0.001) TCGA-55-7907-01 15 65494368 65494368 C T CILP Splice_Site p.X343_splice 0.12 TCGA-55-7907-01 15 65676739 65676739 A G IGDCC4 Missense_Mutation p.S1121P 0.22 tolerated(1) benign(0.001) TCGA-55-7907-01 15 67073688 67073688 A T SMAD6 Missense_Mutation p.I436F 0.21 deleterious(0) probably_damaging(0.958) TCGA-55-7907-01 15 73545747 73545747 G A NEO1 Missense_Mutation p.S634N 0.29 deleterious(0) benign(0.128) TCGA-55-7907-01 15 75114169 75114169 G T LMAN1L Splice_Site p.X354_splice 0.14 TCGA-55-7907-01 15 75499772 75499772 C T C15orf39 Silent p.P461P 0.33 TCGA-55-7907-01 15 75981130 75981130 A G CSPG4 Missense_Mutation p.L759P 0.25 deleterious(0) possibly_damaging(0.886) TCGA-55-7907-01 15 78487043 78487043 G T ACSBG1 Silent p.A86A 0.20 TCGA-55-7907-01 15 78882901 78882901 A G CHRNA5 Missense_Mutation p.R390G 0.36 tolerated(0.2) benign(0.232) TCGA-55-7907-01 15 81592569 81592569 C T IL16 Missense_Mutation p.P968S 0.14 deleterious(0) probably_damaging(0.998) TCGA-55-7907-01 15 84561559 84561559 C A ADAMTSL3 Nonsense_Mutation p.C462* 0.28 TCGA-55-7907-01 15 90335755 90335755 T C ANPEP Missense_Mutation p.N763S 0.08 tolerated(0.42) benign(0.014) TCGA-55-7907-01 15 91769718 91769718 G T SV2B Silent p.R75R 0.27 TCGA-55-7907-01 15 91769719 91769719 G T SV2B Missense_Mutation p.G76C 0.27 deleterious(0.02) possibly_damaging(0.765) TCGA-55-7907-01 16 1306591 1306591 G T TPSD1 Missense_Mutation p.V53L 0.29 deleterious(0) probably_damaging(0.937) TCGA-55-7907-01 16 15677094 15677094 C A C16orf45 Silent p.A167A 0.24 TCGA-55-7907-01 16 15851831 15851831 G T MYH11 Silent p.I483I 0.27 TCGA-55-7907-01 16 1872979 1872979 C A HAGH Nonsense_Mutation p.E46* 0.25 TCGA-55-7907-01 16 19485485 19485485 A T TMC5 Missense_Mutation p.L659F 0.28 deleterious(0) probably_damaging(0.996) TCGA-55-7907-01 16 1995919 1995919 G T RPL3L Missense_Mutation p.H322N 0.23 tolerated(0.09) benign(0.119) TCGA-55-7907-01 16 20335338 20335338 C A GP2 Missense_Mutation p.R112L 0.28 deleterious(0) probably_damaging(0.938) TCGA-55-7907-01 16 20373839 20373839 G T PDILT Missense_Mutation p.Q435K 0.29 deleterious(0.03) possibly_damaging(0.453) TCGA-55-7907-01 16 20448427 20448427 G C ACSM5 Silent p.G454G 0.21 TCGA-55-7907-01 16 20476923 20476923 G A ACSM2A Missense_Mutation p.E88K 0.17 tolerated(0.8) benign(0.077) TCGA-55-7907-01 16 20477017 20477017 G T ACSM2A Missense_Mutation p.W119L 0.20 deleterious(0.03) probably_damaging(1) TCGA-55-7907-01 16 2115637 2115637 G T TSC2 Splice_Site p.X572_splice 0.26 TCGA-55-7907-01 16 25143815 25143815 G A LCMT1 Missense_Mutation p.G100S 0.21 deleterious(0) probably_damaging(1) TCGA-55-7907-01 16 27455868 27455868 G T IL21R Silent p.P171P 0.35 TCGA-55-7907-01 16 27840137 27840137 G T GSG1L Missense_Mutation p.P268H 0.39 tolerated(0.39) benign(0.006) TCGA-55-7907-01 16 28734788 28734788 C G EIF3C Missense_Mutation p.A319G 0.21 tolerated(0.22) benign(0.102) TCGA-55-7907-01 16 30505629 30505629 A T ITGAL Missense_Mutation p.Q437L 0.30 deleterious(0.04) benign(0.004) TCGA-55-7907-01 16 30982946 30982946 G C SETD1A Silent p.T1088T 0.18 TCGA-55-7907-01 16 30991034 30991034 G T SETD1A Silent p.T1309T 0.42 TCGA-55-7907-01 16 31309101 31309101 G T ITGAM Silent p.G512G 0.27 TCGA-55-7907-01 16 31476460 31476461 - GT ARMC5 Intron 0.16 TCGA-55-7907-01 16 31734648 31734648 G T ZNF720 Missense_Mutation p.S67I 0.44 tolerated(0.05) benign(0.367) TCGA-55-7907-01 16 3299630 3299630 C A MEFV Missense_Mutation p.R354L 0.21 deleterious(0.02) benign(0.004) TCGA-55-7907-01 16 33647291 33647291 G T RP11-812E19.9 Missense_Mutation p.N103K 0.20 deleterious_low_confidence(0.01) probably_damaging(0.914) TCGA-55-7907-01 16 3544669 3544669 G T C16orf90 Silent p.G85G 0.35 TCGA-55-7907-01 16 48212508 48212508 C A ABCC11 Missense_Mutation p.K1116N 0.13 tolerated(0.07) benign(0.412) TCGA-55-7907-01 16 4924688 4924688 C T UBN1 Silent p.G759G 0.30 TCGA-55-7907-01 16 50830247 50830247 G T CYLD Missense_Mutation p.G900V 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 16 55857462 55857462 C A CES1 Missense_Mutation p.S180I 0.23 deleterious(0.03) possibly_damaging(0.763) TCGA-55-7907-01 16 56669682 56669682 G A MT1M 3'Flank 0.21 TCGA-55-7907-01 16 57110788 57110788 G T NLRC5 Missense_Mutation p.R1603S 0.13 tolerated(0.16) benign(0.342) TCGA-55-7907-01 16 66613615 66613615 G A CMTM2 Silent p.S35S 0.09 TCGA-55-7907-01 16 70977764 70977764 C A HYDIN Missense_Mutation p.C2207F 0.30 possibly_damaging(0.737) TCGA-55-7907-01 16 71748719 71748719 G C PHLPP2 Intron 0.24 TCGA-55-7907-01 16 71823291 71823291 C A AP1G1 Missense_Mutation p.C31F 0.28 deleterious(0) probably_damaging(0.995) TCGA-55-7907-01 16 72141433 72141433 C T DHX38 Missense_Mutation p.A932V 0.28 deleterious(0) probably_damaging(0.996) TCGA-55-7907-01 16 72991600 72991600 C A ZFHX3 Silent p.V815V 0.21 TCGA-55-7907-01 16 74537629 74537629 C G GLG1 Missense_Mutation p.D192H 0.16 deleterious(0.02) benign(0.089) TCGA-55-7907-01 16 77401560 77401560 C A ADAMTS18 Missense_Mutation p.A186S 0.23 tolerated(0.11) possibly_damaging(0.838) TCGA-55-7907-01 16 81730228 81730228 G T CMIP Nonsense_Mutation p.G532* 0.24 TCGA-55-7907-01 16 84229857 84229857 G T ADAD2 Silent p.G551G 0.15 TCGA-55-7907-01 16 84690791 84690791 G T KLHL36 Silent p.L126L 0.13 TCGA-55-7907-01 16 89245932 89245932 C A CDH15 Missense_Mutation p.P51T 0.21 deleterious(0) probably_damaging(0.995) TCGA-55-7907-01 17 10233706 10233706 C A MYH13 Missense_Mutation p.R811S 0.67 deleterious(0.01) benign(0.003) TCGA-55-7907-01 17 10302883 10302883 C A MYH8 Missense_Mutation p.R1280I 0.08 deleterious(0) possibly_damaging(0.629) TCGA-55-7907-01 17 10357003 10357003 G A MYH4 Missense_Mutation p.T964I 0.12 tolerated(0.08) probably_damaging(0.998) TCGA-55-7907-01 17 10409238 10409238 C A MYH1 Nonsense_Mutation p.E689* 0.10 TCGA-55-7907-01 17 10429960 10429960 G T MYH2 Nonsense_Mutation p.Y1381* 0.07 TCGA-55-7907-01 17 16455682 16455682 A G ZNF287 Missense_Mutation p.Y592H 0.43 deleterious(0.05) probably_damaging(0.999) TCGA-55-7907-01 17 16466476 16466476 T A ZNF287 Missense_Mutation p.L233F 0.59 tolerated(0.71) possibly_damaging(0.504) TCGA-55-7907-01 17 16725441 16725441 G A AC022596.6 RNA 0.05 TCGA-55-7907-01 17 18220322 18220322 C T SMCR8 Missense_Mutation p.P407S 0.25 tolerated(0.7) benign(0.007) TCGA-55-7907-01 17 18392294 18392294 G A LGALS9C Missense_Mutation p.V162M 0.04 tolerated(0.47) benign(0.018) TCGA-55-7907-01 17 18922753 18922753 T A SLC5A10 Missense_Mutation p.L436H 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 17 19679657 19679657 G A ULK2 3'UTR 0.09 TCGA-55-7907-01 17 21207773 21207773 G T MAP2K3 Missense_Mutation p.G202C 0.20 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 17 21318894 21318894 G T KCNJ12 Missense_Mutation p.W80C 0.16 deleterious(0) probably_damaging(1) TCGA-55-7907-01 17 263305 263305 G T C17orf97 Missense_Mutation p.G224V 0.62 deleterious_low_confidence(0.03) benign(0.281) TCGA-55-7907-01 17 27401991 27401991 C T TIAF1 5'UTR 0.21 TCGA-55-7907-01 17 27958224 27958224 C A SSH2 Nonsense_Mutation p.E1303* 0.20 TCGA-55-7907-01 17 27958225 27958225 C A SSH2 Missense_Mutation p.M1302I 0.21 tolerated_low_confidence(0.56) benign(0.001) TCGA-55-7907-01 17 28506291 28506291 G C NSRP1 Missense_Mutation p.E162Q 0.43 deleterious(0.01) probably_damaging(0.952) TCGA-55-7907-01 17 29171879 29171879 C G ATAD5 Missense_Mutation p.L799V 0.27 deleterious(0.04) benign(0.099) TCGA-55-7907-01 17 29677323 29677323 G A NF1 Missense_Mutation p.D2482N 0.18 tolerated_low_confidence(0.17) benign(0.004) TCGA-55-7907-01 17 31322424 31322424 C A SPACA3 Intron 0.44 TCGA-55-7907-01 17 32964652 32964652 G T TMEM132E Missense_Mutation p.G786C 0.12 deleterious(0) probably_damaging(0.987) TCGA-55-7907-01 17 33348688 33348688 C A RFFL Missense_Mutation p.R98L 0.45 deleterious(0) probably_damaging(0.96) TCGA-55-7907-01 17 33454165 33454165 C A FNDC8 Missense_Mutation p.P105H 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-7907-01 17 34072570 34072570 C - GAS2L2 Frame_Shift_Del p.G649Vfs*61 0.24 TCGA-55-7907-01 17 3417887 3417887 C T TRPV3 Missense_Mutation p.A760T 0.63 tolerated(0.59) benign(0.005) TCGA-55-7907-01 17 34311469 34311469 T A CCL14 Silent p.S49S 0.31 TCGA-55-7907-01 17 37234203 37234203 G C PLXDC1 Silent p.T383T 0.17 TCGA-55-7907-01 17 38556818 38556818 A G TOP2A Missense_Mutation p.I921T 0.43 deleterious(0) possibly_damaging(0.876) TCGA-55-7907-01 17 39092893 39092893 C G KRT23 5'UTR 0.42 TCGA-55-7907-01 17 39551870 39551870 G T KRT31 Silent p.V198V 0.10 TCGA-55-7907-01 17 39595035 39595035 T A KRT38 Missense_Mutation p.N270Y 0.15 deleterious(0.02) possibly_damaging(0.633) TCGA-55-7907-01 17 39646024 39646024 G A KRT36 Silent p.I31I 0.15 TCGA-55-7907-01 17 39780331 39780331 T A KRT17 Missense_Mutation p.K144M 0.20 deleterious(0) probably_damaging(0.992) TCGA-55-7907-01 17 39975577 39975577 C T FKBP10 Silent p.R281R 0.29 TCGA-55-7907-01 17 40344963 40344963 G A GHDC Silent p.P116P 0.24 TCGA-55-7907-01 17 40823471 40823471 C G PLEKHH3 Missense_Mutation p.E394D 0.35 deleterious(0) unknown(0) TCGA-55-7907-01 17 40914379 40914379 C A RAMP2 Missense_Mutation p.T57K 0.39 tolerated(1) benign(0) TCGA-55-7907-01 17 41958884 41958884 C T MPP2 Missense_Mutation p.R252H 0.44 deleterious(0.04) benign(0.056) TCGA-55-7907-01 17 42429545 42429545 A G GRN Missense_Mutation p.T448A 0.17 tolerated(0.26) benign(0.056) TCGA-55-7907-01 17 42475031 42475031 C G GPATCH8 Missense_Mutation p.A1472P 0.11 tolerated(0.23) unknown(0) TCGA-55-7907-01 17 4576947 4576947 C A PELP1 Missense_Mutation p.M535I 0.61 benign(0.218) TCGA-55-7907-01 17 46669576 46669576 G C HOXB5 Missense_Mutation p.P269A 0.22 deleterious(0) probably_damaging(0.991) TCGA-55-7907-01 17 46868950 46868950 G A TTLL6 Silent p.F338F 0.38 TCGA-55-7907-01 17 48275559 48275559 G C COL1A1 Missense_Mutation p.S184C 0.47 unknown(0) TCGA-55-7907-01 17 48655862 48655862 C A CACNA1G Silent p.G746G 0.39 TCGA-55-7907-01 17 48746710 48746710 C T ABCC3 Intron 0.46 TCGA-55-7907-01 17 51902427 51902427 G T KIF2B 3'UTR 0.10 TCGA-55-7907-01 17 55193519 55193519 G T AKAP1 Missense_Mutation p.A777S 0.23 deleterious(0) probably_damaging(0.962) TCGA-55-7907-01 17 56355235 56355235 G C MPO Missense_Mutation p.P386R 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-55-7907-01 17 56599366 56599366 C A SEPT4 Silent p.V268V 0.40 TCGA-55-7907-01 17 57157191 57157191 C A TRIM37 Silent p.R180R 0.22 TCGA-55-7907-01 17 60348785 60348785 C T TBC1D3P2 RNA 0.17 TCGA-55-7907-01 17 60472491 60472491 C A EFCAB3 Missense_Mutation p.L196I 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-55-7907-01 17 61417549 61417549 C T TANC2 Missense_Mutation p.R481C 0.55 deleterious(0) possibly_damaging(0.836) TCGA-55-7907-01 17 61607486 61607486 C A KCNH6 Silent p.P114P 0.14 TCGA-55-7907-01 17 61994765 61994765 G A GH1 Silent p.Y186Y 0.17 TCGA-55-7907-01 17 62553734 62553734 C A SMURF2 Missense_Mutation p.V475F 0.11 deleterious(0) possibly_damaging(0.809) TCGA-55-7907-01 17 62893428 62893428 C T LRRC37A3 5'UTR 0.12 TCGA-55-7907-01 17 63149633 63149633 A C RGS9 Missense_Mutation p.T51P 0.07 deleterious(0) probably_damaging(0.987) TCGA-55-7907-01 17 6329034 6329034 C A AIPL1 Missense_Mutation p.V301L 0.47 deleterious(0) possibly_damaging(0.829) TCGA-55-7907-01 17 63822349 63822349 C G CEP112 Intron 0.45 TCGA-55-7907-01 17 64880889 64880889 G A CACNG5 Intron 0.35 TCGA-55-7907-01 17 64881147 64881147 G T CACNG5 Silent p.A206A 0.38 TCGA-55-7907-01 17 649543 649543 C G GEMIN4 Missense_Mutation p.Q580H 0.56 deleterious(0.05) benign(0.211) TCGA-55-7907-01 17 65739938 65739938 G C NOL11 Missense_Mutation p.R708T 0.13 tolerated(0.81) benign(0.003) TCGA-55-7907-01 17 65871746 65871746 G A BPTF Intron 0.25 TCGA-55-7907-01 17 65871764 65871764 G A BPTF Intron 0.21 TCGA-55-7907-01 17 65871850 65871850 G C BPTF Intron 0.21 TCGA-55-7907-01 17 6610444 6610444 A T SLC13A5 Missense_Mutation p.M45K 0.60 deleterious(0) probably_damaging(0.988) TCGA-55-7907-01 17 6683462 6683462 T A FBXO39 Missense_Mutation p.L92Q 0.65 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 17 67023203 67023203 C G ABCA9 Missense_Mutation p.R655P 0.48 deleterious(0.01) possibly_damaging(0.752) TCGA-55-7907-01 17 68171232 68171232 G T KCNJ2 Missense_Mutation p.G18C 0.36 deleterious(0.02) possibly_damaging(0.894) TCGA-55-7907-01 17 68171721 68171734 GCCAAGATGGCAAA - KCNJ2 Frame_Shift_Del p.M183Efs*52 0.16 TCGA-55-7907-01 17 71387661 71387661 C A SDK2 Missense_Mutation p.M1305I 0.53 tolerated(0.07) benign(0.014) TCGA-55-7907-01 17 71389876 71389876 C A SDK2 Nonsense_Mutation p.E1241* 0.46 TCGA-55-7907-01 17 72277988 72277988 G T DNAI2 Missense_Mutation p.R11L 0.14 deleterious(0) probably_damaging(0.978) TCGA-55-7907-01 17 72435895 72435895 G C GPRC5C Missense_Mutation p.E39Q 0.14 deleterious_low_confidence(0.04) benign(0.094) TCGA-55-7907-01 17 72521974 72521974 T C CD300LB Missense_Mutation p.R132G 0.25 deleterious(0) possibly_damaging(0.885) TCGA-55-7907-01 17 72578359 72578359 G T CD300LD Silent p.T157T 0.22 TCGA-55-7907-01 17 72613290 72613290 G T CD300E Missense_Mutation p.P119T 0.21 tolerated(0.05) benign(0.217) TCGA-55-7907-01 17 7321168 7321168 C T NLGN2 3'UTR 0.62 TCGA-55-7907-01 17 73259660 73259660 G T MRPS7 Intron 0.48 TCGA-55-7907-01 17 74003290 74003290 C T EVPL Missense_Mutation p.R1999H 0.47 deleterious(0.01) probably_damaging(0.912) TCGA-55-7907-01 17 74901414 74901414 A T MGAT5B Missense_Mutation p.Q296L 0.28 deleterious(0.01) possibly_damaging(0.535) TCGA-55-7907-01 17 7578457 7578457 C G TP53 Missense_Mutation p.R158P 0.63 deleterious(0) probably_damaging(0.997) TCGA-55-7907-01 17 78169367 78169367 G T CARD14 Nonsense_Mutation p.E504* 0.17 TCGA-55-7907-01 17 78350164 78350164 C T RNF213 Missense_Mutation p.R4417C 0.10 benign(0.001) TCGA-55-7907-01 17 79080634 79080634 G A BAIAP2 Missense_Mutation p.R476Q 0.12 tolerated(0.22) benign(0.024) TCGA-55-7907-01 17 80231249 80231249 C T CSNK1D Silent p.L3L 0.14 TCGA-55-7907-01 17 80231254 80231254 C G CSNK1D Missense_Mutation p.E2Q 0.14 deleterious_low_confidence(0) possibly_damaging(0.716) TCGA-55-7907-01 17 8140694 8140694 T A CTC1 Missense_Mutation p.Q264L 0.59 deleterious(0) probably_damaging(0.992) TCGA-55-7907-01 17 8222370 8222370 C A ARHGEF15 Silent p.V693V 0.65 TCGA-55-7907-01 17 8448782 8448782 C T MYH10 Missense_Mutation p.G472E 0.24 probably_damaging(1) TCGA-55-7907-01 18 13826379 13826379 C G MC5R Nonsense_Mutation p.Y205* 0.23 TCGA-55-7907-01 18 14543179 14543179 C A POTEC 5'Flank 0.15 TCGA-55-7907-01 18 14543225 14543225 C A POTEC 5'Flank 0.50 TCGA-55-7907-01 18 14752572 14752572 C A ANKRD30B Missense_Mutation p.L77I 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-55-7907-01 18 14752928 14752928 C G ANKRD30B Missense_Mutation p.L143V 0.25 deleterious(0.01) possibly_damaging(0.733) TCGA-55-7907-01 18 14799128 14799128 G T ANKRD30B Missense_Mutation p.K686N 0.09 deleterious_low_confidence(0) benign(0) TCGA-55-7907-01 18 19751152 19751152 C A GATA6 Missense_Mutation p.A16D 0.33 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-55-7907-01 18 2891683 2891683 G T EMILIN2 Missense_Mutation p.G520W 0.24 deleterious(0.04) possibly_damaging(0.844) TCGA-55-7907-01 18 29111197 29111197 G C DSG2 Missense_Mutation p.G421A 0.28 deleterious(0.01) probably_damaging(1) TCGA-55-7907-01 18 30791939 30791939 C A CCDC178 Missense_Mutation p.C720F 0.35 tolerated(0.1) possibly_damaging(0.861) TCGA-55-7907-01 18 42281594 42281594 G T SETBP1 Nonsense_Mutation p.E95* 0.39 TCGA-55-7907-01 18 43204627 43204627 G T SLC14A2 5'UTR 0.44 TCGA-55-7907-01 18 46812949 46812949 G T DYM Silent p.G267G 0.27 TCGA-55-7907-01 18 52896169 52896169 C A TCF4 Missense_Mutation p.Q698H 0.47 deleterious(0) probably_damaging(0.975) TCGA-55-7907-01 18 57106909 57106909 C T CCBE1 Silent p.V305V 0.24 TCGA-55-7907-01 18 65178663 65178663 C A DSEL Missense_Mutation p.L1071F 0.32 deleterious(0.03) possibly_damaging(0.76) TCGA-55-7907-01 18 6965403 6965403 C A LAMA1 Missense_Mutation p.R2360L 0.17 deleterious(0.02) benign(0.009) TCGA-55-7907-01 18 74610973 74610973 A G ZNF236 Splice_Site p.X562_splice 0.48 TCGA-55-7907-01 18 8798277 8798277 G T SOGA2 Missense_Mutation p.Q808H 0.22 deleterious(0.03) possibly_damaging(0.712) TCGA-55-7907-01 18 905486 905486 C T ADCYAP1 Silent p.F33F 0.24 TCGA-55-7907-01 19 11616985 11616985 C G ECSIT 3'UTR 0.25 TCGA-55-7907-01 19 11762830 11762830 G A ZNF833P RNA 0.35 TCGA-55-7907-01 19 12432132 12432132 C T ZNF563 Missense_Mutation p.E49K 0.27 deleterious(0) benign(0.028) TCGA-55-7907-01 19 12691789 12691789 C T ZNF490 Missense_Mutation p.C367Y 0.42 deleterious(0.01) probably_damaging(1) TCGA-55-7907-01 19 14938234 14938234 C A OR7A5 Missense_Mutation p.A274S 0.50 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-55-7907-01 19 17720884 17720884 C G UNC13A Missense_Mutation p.W1559S 0.44 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 19 18896308 18896308 C A COMP Missense_Mutation p.G573C 0.43 deleterious(0) probably_damaging(1) TCGA-55-7907-01 19 19378887 19378887 C A TM6SF2 Nonsense_Mutation p.E207* 0.71 TCGA-55-7907-01 19 19414190 19414190 C G SUGP1 Missense_Mutation p.E244Q 0.36 tolerated(0.23) benign(0.232) TCGA-55-7907-01 19 19989306 19989306 G T ZNF253 Missense_Mutation p.R7I 0.41 deleterious(0) probably_damaging(0.959) TCGA-55-7907-01 19 21950326 21950326 G C ZNF100 5'UTR 0.50 TCGA-55-7907-01 19 22574545 22574545 C T ZNF98 Missense_Mutation p.A498T 0.17 deleterious(0.04) benign(0.36) TCGA-55-7907-01 19 22575687 22575687 C A ZNF98 Missense_Mutation p.R117L 0.14 tolerated(0.15) benign(0) TCGA-55-7907-01 19 22847456 22847456 A T ZNF492 Nonsense_Mutation p.R329* 0.47 TCGA-55-7907-01 19 2733252 2733252 C T SLC39A3 Missense_Mutation p.V148M 0.46 tolerated(0.16) benign(0.008) TCGA-55-7907-01 19 30505918 30505918 A G URI1 Missense_Mutation p.E517G 0.34 deleterious(0) probably_damaging(0.964) TCGA-55-7907-01 19 30935373 30935373 T A ZNF536 Missense_Mutation p.C302S 0.20 deleterious(0) probably_damaging(0.997) TCGA-55-7907-01 19 31768675 31768675 C T TSHZ3 Missense_Mutation p.R675Q 0.40 tolerated(0.3) benign(0.022) TCGA-55-7907-01 19 3527758 3527758 G T FZR1 Silent p.V200V 0.37 TCGA-55-7907-01 19 35434349 35434349 G T ZNF30 Missense_Mutation p.G161V 0.50 tolerated(0.56) possibly_damaging(0.906) TCGA-55-7907-01 19 35832310 35832310 G T CD22 Silent p.S524S 0.43 TCGA-55-7907-01 19 36231335 36231335 G A IGFLR1 Silent p.A96A 0.18 TCGA-55-7907-01 19 3642905 3642905 C G PIP5K1C Missense_Mutation p.R561T 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.597) TCGA-55-7907-01 19 37903387 37903387 A T ZNF569 3'UTR 0.47 TCGA-55-7907-01 19 37975292 37975292 C T ZNF570 Silent p.S256S 0.22 TCGA-55-7907-01 19 38572907 38572907 G C SIPA1L3 Silent p.G234G 0.47 TCGA-55-7907-01 19 38969098 38969098 T A RYR1 Missense_Mutation p.M1493K 0.24 probably_damaging(0.986) TCGA-55-7907-01 19 39104562 39104562 G T MAP4K1 Missense_Mutation p.A164D 0.12 deleterious(0) probably_damaging(0.941) TCGA-55-7907-01 19 41009848 41009848 G A SPTBN4 Missense_Mutation p.A492T 0.32 deleterious(0) possibly_damaging(0.579) TCGA-55-7907-01 19 42270096 42270096 G T CEACAM6 Missense_Mutation p.A322S 0.17 tolerated(0.85) benign(0.001) TCGA-55-7907-01 19 42341304 42341304 C T LYPD4 Silent p.E218E 0.20 TCGA-55-7907-01 19 42410730 42410730 G T ARHGEF1 Missense_Mutation p.Q886H 0.21 tolerated(0.13) possibly_damaging(0.632) TCGA-55-7907-01 19 43519460 43519460 C T PSG11 Missense_Mutation p.D258N 0.22 tolerated(1) benign(0.007) TCGA-55-7907-01 19 43519523 43519523 C T PSG11 Splice_Site p.X237_splice 0.21 TCGA-55-7907-01 19 43708260 43708260 C A PSG4 Missense_Mutation p.G70W 0.48 deleterious(0) probably_damaging(1) TCGA-55-7907-01 19 44514466 44514466 G T ZNF230 Missense_Mutation p.C92F 0.22 deleterious(0.04) benign(0.005) TCGA-55-7907-01 19 44570392 44570392 A G ZNF223 Silent p.G137G 0.23 TCGA-55-7907-01 19 44833074 44833074 T A ZNF112 Silent p.I418I 0.24 TCGA-55-7907-01 19 44980970 44980970 C A ZNF180 Silent p.P576P 0.40 TCGA-55-7907-01 19 45419582 45419582 G T APOC1 Missense_Mutation p.R65L 0.22 deleterious(0.01) benign(0.165) TCGA-55-7907-01 19 45419583 45419583 G T APOC1 Splice_Site p.X65_splice 0.22 TCGA-55-7907-01 19 45885899 45885899 G A PPP1R13L Silent p.S778S 0.28 TCGA-55-7907-01 19 45885900 45885900 G C PPP1R13L Missense_Mutation p.S778C 0.28 deleterious(0) possibly_damaging(0.829) TCGA-55-7907-01 19 46094935 46094935 G C GPR4 Missense_Mutation p.L64V 0.16 deleterious(0) probably_damaging(0.998) TCGA-55-7907-01 19 46832479 46832479 G T HIF3A Missense_Mutation p.D486Y 0.24 deleterious(0) probably_damaging(0.989) TCGA-55-7907-01 19 47112165 47112165 G A CALM3 Silent p.K116K 0.38 TCGA-55-7907-01 19 47127215 47127215 C A PTGIR Missense_Mutation p.A90S 0.20 tolerated(0.44) benign(0.022) TCGA-55-7907-01 19 49005745 49005745 C G LMTK3 Missense_Mutation p.G276R 0.10 probably_damaging(0.963) TCGA-55-7907-01 19 49147712 49147712 G - CA11 Frame_Shift_Del p.P86Hfs*2 0.32 TCGA-55-7907-01 19 49253552 49253552 G A FUT1 Silent p.T329T 0.67 TCGA-55-7907-01 19 50391574 50391574 C T TBC1D17 Silent p.P582P 0.46 TCGA-55-7907-01 19 50542426 50542426 G C ZNF473 Silent p.V6V 0.61 TCGA-55-7907-01 19 50868854 50868854 G A NAPSA Missense_Mutation p.P9S 0.58 tolerated(0.76) unknown(0) TCGA-55-7907-01 19 51140624 51140624 G C SYT3 Missense_Mutation p.I15M 0.49 tolerated(0.08) benign(0.001) TCGA-55-7907-01 19 51328979 51328979 A G KLK15 3'Flank 0.67 TCGA-55-7907-01 19 51412616 51412616 G A KLK4 Missense_Mutation p.P39L 0.62 tolerated(0.06) possibly_damaging(0.886) TCGA-55-7907-01 19 51465069 51465069 G - KLK6 Frame_Shift_Del p.Y172Tfs*78 0.35 TCGA-55-7907-01 19 51771857 51771857 T A SIGLECL1 3'UTR 0.68 TCGA-55-7907-01 19 51986392 51986392 C A CEACAM18 Nonsense_Mutation p.Y326* 0.62 TCGA-55-7907-01 19 52000636 52000636 A T SIGLEC12 Missense_Mutation p.L490Q 0.36 deleterious(0) probably_damaging(0.99) TCGA-55-7907-01 19 52130768 52130768 C A SIGLEC5 Missense_Mutation p.C410F 0.54 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 19 53473810 53473810 C A ZNF702P RNA 0.54 TCGA-55-7907-01 19 53668496 53668496 T A ZNF665 Missense_Mutation p.H416L 0.61 tolerated(0.37) benign(0.002) TCGA-55-7907-01 19 53793856 53793856 G C BIRC8 5'UTR 0.73 TCGA-55-7907-01 19 53793857 53793857 G T BIRC8 5'UTR 0.73 TCGA-55-7907-01 19 54290961 54290961 C G MIR371A RNA 0.55 TCGA-55-7907-01 19 54445557 54445557 C A CACNG7 3'UTR 0.51 TCGA-55-7907-01 19 5455761 5455761 C A ZNRF4 Missense_Mutation p.L87M 0.28 deleterious(0.01) probably_damaging(0.942) TCGA-55-7907-01 19 54705019 54705019 C T RPS9 Intron 0.69 TCGA-55-7907-01 19 55401293 55401293 C G FCAR 3'UTR 0.56 TCGA-55-7907-01 19 55686584 55686584 G T SYT5 Missense_Mutation p.P222T 0.62 tolerated(0.56) benign(0.018) TCGA-55-7907-01 19 55693137 55693137 G T PTPRH Missense_Mutation p.H1111Q 0.59 benign(0.015) TCGA-55-7907-01 19 55899329 55899329 G T RPL28 Silent p.R79R 0.54 TCGA-55-7907-01 19 56320389 56320389 C T NLRP11 Missense_Mutation p.M529I 0.57 tolerated(0.17) benign(0.002) TCGA-55-7907-01 19 56467463 56467463 C A NLRP8 Missense_Mutation p.S680Y 0.53 deleterious(0.01) benign(0.115) TCGA-55-7907-01 19 56538657 56538657 G T NLRP5 Missense_Mutation p.R353L 0.25 deleterious(0) possibly_damaging(0.471) TCGA-55-7907-01 19 56704301 56704301 C A ZSCAN5B Nonsense_Mutation p.E41* 0.67 TCGA-55-7907-01 19 56935118 56935118 G T ZNF583 Missense_Mutation p.R364L 0.60 tolerated(0.07) probably_damaging(0.996) TCGA-55-7907-01 19 57327159 57327159 C A PEG3 Missense_Mutation p.G884V 0.58 tolerated(0.26) benign(0.117) TCGA-55-7907-01 19 57865133 57865133 G T ZNF304 Missense_Mutation p.R25L 0.46 tolerated(0.11) benign(0.23) TCGA-55-7907-01 19 7916418 7916418 C T EVI5L Silent p.F284F 0.11 TCGA-55-7907-01 19 8982316 8982316 C A MUC16 Missense_Mutation p.G13987C 0.37 probably_damaging(1) TCGA-55-7907-01 19 9060335 9060335 T A MUC16 Silent p.T9037T 0.41 TCGA-55-7907-01 19 9076225 9076225 C G MUC16 Missense_Mutation p.G3741R 0.36 unknown(0) TCGA-55-7907-01 19 9325228 9325228 C A OR7D4 Missense_Mutation p.G96W 0.37 deleterious(0) benign(0.001) TCGA-55-7907-01 1 100368266 100368266 G A AGL Missense_Mutation p.E1206K 0.22 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 1 103385898 103385898 G T COL11A1 Missense_Mutation p.S1244Y 0.25 unknown(0) TCGA-55-7907-01 1 111060633 111060633 C A KCNA10 Missense_Mutation p.K259N 0.30 tolerated(0.32) benign(0.009) TCGA-55-7907-01 1 111146816 111146816 C A KCNA2 Missense_Mutation p.G197C 0.20 deleterious(0.01) benign(0.043) TCGA-55-7907-01 1 11141175 11141175 C G EXOSC10 Missense_Mutation p.Q467H 0.10 tolerated(0.15) benign(0.094) TCGA-55-7907-01 1 11736107 11736107 G A MAD2L2 Silent p.P141P 0.32 TCGA-55-7907-01 1 119927405 119927405 A G HAO2 Missense_Mutation p.Q97R 0.25 tolerated(0.47) benign(0.001) TCGA-55-7907-01 1 1222975 1222975 C G SCNN1D Missense_Mutation p.H466Q 0.25 deleterious(0.03) benign(0.324) TCGA-55-7907-01 1 148017504 148017504 C A NBPF14 Missense_Mutation p.G266V 0.28 deleterious(0.02) probably_damaging(0.991) TCGA-55-7907-01 1 149858795 149858795 G T HIST2H2AC Missense_Mutation p.D91Y 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-7907-01 1 149885080 149885080 C T SV2A Missense_Mutation p.E105K 0.22 deleterious(0.04) benign(0.071) TCGA-55-7907-01 1 152081942 152081942 G T TCHH Silent p.R1251R 0.65 TCGA-55-7907-01 1 152187242 152187242 C G HRNR Missense_Mutation p.S2288T 0.19 unknown(0) TCGA-55-7907-01 1 152191721 152191721 C A HRNR Missense_Mutation p.G795V 0.59 unknown(0) TCGA-55-7907-01 1 152324460 152324460 G C FLG2 Missense_Mutation p.H1934Q 0.47 benign(0.007) TCGA-55-7907-01 1 153012776 153012776 G A SPRR2D Missense_Mutation p.P16L 0.48 tolerated_low_confidence(1) unknown(0) TCGA-55-7907-01 1 154180095 154180095 C A C1orf43 Missense_Mutation p.R199L 0.15 deleterious(0.01) possibly_damaging(0.454) TCGA-55-7907-01 1 155851152 155851152 C A SYT11 Missense_Mutation p.D383E 0.59 deleterious(0) possibly_damaging(0.651) TCGA-55-7907-01 1 155851170 155851170 G C SYT11 Missense_Mutation p.K389N 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-55-7907-01 1 156838013 156838013 C T NTRK1 Silent p.P182P 0.44 TCGA-55-7907-01 1 156914841 156914841 C A ARHGEF11 Missense_Mutation p.R987S 0.57 deleterious(0) benign(0.245) TCGA-55-7907-01 1 156918261 156918261 G C ARHGEF11 Missense_Mutation p.S652C 0.25 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 1 158609404 158609404 G A SPTA1 Nonsense_Mutation p.Q1650* 0.50 TCGA-55-7907-01 1 158646020 158646020 G T SPTA1 Silent p.I341I 0.55 TCGA-55-7907-01 1 158687187 158687187 C G OR6K3 Missense_Mutation p.C240S 0.48 deleterious(0) probably_damaging(1) TCGA-55-7907-01 1 159170763 159170763 G T CADM3 3'UTR 0.39 TCGA-55-7907-01 1 159505133 159505133 G T OR10J5 Missense_Mutation p.S222Y 0.54 deleterious(0.02) possibly_damaging(0.865) TCGA-55-7907-01 1 160461040 160461040 G A SLAMF6 Missense_Mutation p.S174L 0.33 tolerated(1) benign(0.006) TCGA-55-7907-01 1 161654756 161654756 G T RPL31P11 RNA 0.57 TCGA-55-7907-01 1 161967956 161967956 G C OLFML2B Missense_Mutation p.P378R 0.29 tolerated(0.12) benign(0.03) TCGA-55-7907-01 1 16255538 16255538 G T SPEN Missense_Mutation p.V935F 0.16 benign(0.157) TCGA-55-7907-01 1 16360213 16360213 G T CLCNKA 3'UTR 0.31 TCGA-55-7907-01 1 165175158 165175158 G C LMX1A Missense_Mutation p.P311A 0.13 deleterious(0.05) possibly_damaging(0.542) TCGA-55-7907-01 1 16578015 16578015 C T FBXO42 Missense_Mutation p.G435D 0.25 tolerated(0.87) benign(0) TCGA-55-7907-01 1 169292368 169292368 T A NME7 Missense_Mutation p.S89C 0.53 deleterious(0) possibly_damaging(0.682) TCGA-55-7907-01 1 169529939 169529939 C T F5 Missense_Mutation p.E147K 0.25 tolerated(0.09) benign(0.27) TCGA-55-7907-01 1 17017716 17017716 T C ESPNP RNA 0.14 TCGA-55-7907-01 1 170914672 170914672 G C MROH9 5'UTR 0.22 TCGA-55-7907-01 1 170964581 170964581 G T MROH9 Missense_Mutation p.V416L 0.58 deleterious(0.03) probably_damaging(0.944) TCGA-55-7907-01 1 173455480 173455480 G T PRDX6 Missense_Mutation p.R162S 0.54 deleterious(0) probably_damaging(0.983) TCGA-55-7907-01 1 174190250 174190250 C T RABGAP1L Silent p.A93A 0.46 TCGA-55-7907-01 1 176175712 176175712 C G RFWD2 Missense_Mutation p.V135L 0.16 tolerated(1) benign(0.026) TCGA-55-7907-01 1 176934321 176934321 G T ASTN1 Missense_Mutation p.Q526K 0.52 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-55-7907-01 1 177001626 177001626 G T ASTN1 Silent p.G277G 0.62 TCGA-55-7907-01 1 177249868 177249868 A C BRINP2 Missense_Mutation p.Q519P 0.53 deleterious(0.01) probably_damaging(0.986) TCGA-55-7907-01 1 179084056 179084056 C A ABL2 Missense_Mutation p.Q506H 0.58 tolerated(0.08) possibly_damaging(0.72) TCGA-55-7907-01 1 18149614 18149614 G T ACTL8 Silent p.P37P 0.28 TCGA-55-7907-01 1 182026681 182026681 T G ZNF648 Silent p.A155A 0.39 TCGA-55-7907-01 1 185984364 185984364 A T HMCN1 Missense_Mutation p.E1568D 0.59 probably_damaging(0.996) TCGA-55-7907-01 1 193149690 193149690 G T B3GALT2 Missense_Mutation p.R335S 0.61 deleterious(0.02) possibly_damaging(0.908) TCGA-55-7907-01 1 196706718 196706718 G A CFH Missense_Mutation p.G904S 0.09 deleterious(0.04) possibly_damaging(0.786) TCGA-55-7907-01 1 196879573 196879573 C T CFHR4 Missense_Mutation p.T320I 0.35 tolerated(0.06) benign(0.289) TCGA-55-7907-01 1 197071204 197071204 C A ASPM Missense_Mutation p.A2393S 0.35 tolerated(0.08) probably_damaging(1) TCGA-55-7907-01 1 197237505 197237505 A C CRB1 5'UTR 0.26 TCGA-55-7907-01 1 200534316 200534316 C T KIF14 Missense_Mutation p.V1318I 0.33 tolerated(0.06) benign(0.285) TCGA-55-7907-01 1 200842745 200842745 G C GPR25 Missense_Mutation p.E194Q 0.12 tolerated(0.13) benign(0.044) TCGA-55-7907-01 1 200842866 200842866 A T GPR25 Missense_Mutation p.H234L 0.25 tolerated(0.06) benign(0.124) TCGA-55-7907-01 1 200842882 200842882 G C GPR25 Silent p.R239R 0.26 TCGA-55-7907-01 1 201185763 201185763 C A IGFN1 Silent p.T3159T 0.42 TCGA-55-7907-01 1 203054631 203054631 C T MYOG Silent p.G153G 0.35 TCGA-55-7907-01 1 203134490 203134490 A G ADORA1 Missense_Mutation p.N148S 0.28 tolerated(0.12) benign(0.137) TCGA-55-7907-01 1 204379825 204379825 G A PPP1R15B Nonsense_Mutation p.Q239* 0.30 TCGA-55-7907-01 1 204938072 204938072 T A NFASC Missense_Mutation p.M322K 0.35 deleterious(0) possibly_damaging(0.726) TCGA-55-7907-01 1 204938073 204938073 G T NFASC Missense_Mutation p.M322I 0.36 tolerated(0.06) benign(0.394) TCGA-55-7907-01 1 205030523 205030523 C A CNTN2 Silent p.T316T 0.59 TCGA-55-7907-01 1 205272824 205272824 G T NUAK2 Missense_Mutation p.S547R 0.29 deleterious(0) probably_damaging(0.998) TCGA-55-7907-01 1 207252462 207252462 G T PFKFB2 3'Flank 0.50 TCGA-55-7907-01 1 207700188 207700188 G T CR1 Missense_Mutation p.C326F 0.19 deleterious(0.01) possibly_damaging(0.528) TCGA-55-7907-01 1 208072464 208072464 G T CD34 Missense_Mutation p.P124T 0.19 tolerated(1) benign(0.039) TCGA-55-7907-01 1 208391011 208391011 C A PLXNA2 Missense_Mutation p.G86V 0.52 deleterious(0) probably_damaging(1) TCGA-55-7907-01 1 209791292 209791292 G A LAMB3 Missense_Mutation p.T1004I 0.21 deleterious(0) benign(0.155) TCGA-55-7907-01 1 21220017 21220017 C A EIF4G3 Missense_Mutation p.G699V 0.23 deleterious(0.03) possibly_damaging(0.806) TCGA-55-7907-01 1 214557590 214557590 C A PTPN14 Silent p.T536T 0.13 TCGA-55-7907-01 1 215793784 215793784 G T KCTD3 Nonsense_Mutation p.G758* 0.19 TCGA-55-7907-01 1 215847863 215847863 A T USH2A Missense_Mutation p.W4464R 0.26 probably_damaging(1) TCGA-55-7907-01 1 216243462 216243462 G T USH2A Silent p.V2010V 0.25 TCGA-55-7907-01 1 216258067 216258067 T A USH2A Missense_Mutation p.N1714Y 0.13 benign(0.141) TCGA-55-7907-01 1 216595374 216595374 G T USH2A Nonsense_Mutation p.S102* 0.10 TCGA-55-7907-01 1 216595579 216595579 G T USH2A Silent p.R34R 0.20 TCGA-55-7907-01 1 217822223 217822223 G C SPATA17 Splice_Site p.X23_splice 0.16 TCGA-55-7907-01 1 220379258 220379258 C A RAB3GAP2 Missense_Mutation p.V235L 0.55 tolerated(0.31) benign(0.214) TCGA-55-7907-01 1 220835440 220835440 C T MARK1 Nonsense_Mutation p.R774* 0.49 TCGA-55-7907-01 1 221057824 221057824 C T HLX Silent p.L415L 0.29 TCGA-55-7907-01 1 22172956 22172956 G A HSPG2 Silent p.L2767L 0.16 TCGA-55-7907-01 1 228346781 228346781 G T GJC2 3'UTR 0.22 TCGA-55-7907-01 1 22850841 22850841 C T ZBTB40 Silent p.L1143L 0.24 TCGA-55-7907-01 1 22927454 22927454 C A EPHA8 Missense_Mutation p.H868N 0.31 deleterious(0) probably_damaging(0.997) TCGA-55-7907-01 1 22927967 22927967 G T EPHA8 Splice_Site p.X968_splice 0.32 TCGA-55-7907-01 1 22987523 22987523 C T C1QB Missense_Mutation p.R136W 0.13 deleterious(0) possibly_damaging(0.789) TCGA-55-7907-01 1 22987873 22987873 G T C1QB Missense_Mutation p.E252D 0.25 tolerated_low_confidence(0.38) benign(0.003) TCGA-55-7907-01 1 236205319 236205319 G C NID1 Silent p.P342P 0.54 TCGA-55-7907-01 1 236907948 236907948 G T ACTN2 Missense_Mutation p.Q426H 0.56 tolerated(0.06) benign(0.026) TCGA-55-7907-01 1 237756790 237756790 G T RYR2 Silent p.V1430V 0.59 TCGA-55-7907-01 1 23965672 23965672 C T MDS2 Missense_Mutation p.S26L 0.50 deleterious_low_confidence(0.02) possibly_damaging(0.514) TCGA-55-7907-01 1 240255893 240255893 G T FMN2 Missense_Mutation p.D162Y 0.62 unknown(0) TCGA-55-7907-01 1 246093203 246093203 T A SMYD3 Missense_Mutation p.M190L 0.40 tolerated(0.92) benign(0.001) TCGA-55-7907-01 1 247835510 247835510 C A OR13G1 Silent p.V278V 0.57 TCGA-55-7907-01 1 248224661 248224661 C A OR2L3 Missense_Mutation p.H226Q 0.27 tolerated(0.63) benign(0.004) TCGA-55-7907-01 1 248343895 248343895 G T OR2M2 Missense_Mutation p.C203F 0.61 deleterious(0) probably_damaging(1) TCGA-55-7907-01 1 248366543 248366543 C A OR2M3 Silent p.P58P 0.56 TCGA-55-7907-01 1 248487649 248487649 G A OR2M7 Silent p.I74I 0.56 TCGA-55-7907-01 1 248637461 248637461 C - OR2T3 Frame_Shift_Del p.H271Tfs*7 0.27 TCGA-55-7907-01 1 26664135 26664135 C A AIM1L Missense_Mutation p.G306C 0.18 deleterious(0) probably_damaging(1) TCGA-55-7907-01 1 28223634 28223634 T A RPA2 Splice_Site p.X137_splice 0.20 TCGA-55-7907-01 1 28275671 28275671 C T SMPDL3B Missense_Mutation p.P124L 0.34 deleterious(0.02) possibly_damaging(0.823) TCGA-55-7907-01 1 32133192 32133192 C A COL16A1 Missense_Mutation p.G1114V 0.33 unknown(0) TCGA-55-7907-01 1 32680429 32680429 C A DCDC2B Missense_Mutation p.P249H 0.18 deleterious(0.03) possibly_damaging(0.56) TCGA-55-7907-01 1 32688010 32688010 T C EIF3I 5'UTR 0.41 TCGA-55-7907-01 1 32740530 32740530 C A LCK Intron 0.24 TCGA-55-7907-01 1 3328730 3328730 G T PRDM16 Missense_Mutation p.G657W 0.35 deleterious(0) probably_damaging(0.916) TCGA-55-7907-01 1 34498244 34498244 G T CSMD2 Silent p.L116L 0.42 TCGA-55-7907-01 1 3775365 3775365 C T DFFB Silent p.N66N 0.08 TCGA-55-7907-01 1 38305733 38305733 G A MTF1 Missense_Mutation p.T169I 0.32 deleterious(0) probably_damaging(0.998) TCGA-55-7907-01 1 39781279 39781279 G T MACF1 Missense_Mutation p.S1127I 0.45 probably_damaging(0.988) TCGA-55-7907-01 1 40236125 40236125 C A OXCT2 Missense_Mutation p.R268L 0.05 deleterious(0) probably_damaging(0.953) TCGA-55-7907-01 1 40882506 40882506 C T SMAP2 Missense_Mutation p.P301L 0.14 deleterious(0) possibly_damaging(0.617) TCGA-55-7907-01 1 40882507 40882507 C T SMAP2 Silent p.P301P 0.14 TCGA-55-7907-01 1 41283859 41283859 C A KCNQ4 Missense_Mutation p.F143L 0.19 deleterious(0) probably_damaging(0.998) TCGA-55-7907-01 1 42047384 42047384 C A HIVEP3 Missense_Mutation p.V1029L 0.24 benign(0.034) TCGA-55-7907-01 1 43111805 43111805 G C CCDC30 Splice_Site p.X631_splice 0.24 TCGA-55-7907-01 1 44386213 44386213 G T ST3GAL3 Missense_Mutation p.M363I 0.29 tolerated(0.17) possibly_damaging(0.839) TCGA-55-7907-01 1 44476516 44476516 C G SLC6A9 Missense_Mutation p.Q96H 0.34 tolerated(0.06) benign(0.001) TCGA-55-7907-01 1 47840957 47840957 G T CMPK1 Missense_Mutation p.V213F 0.12 deleterious(0.05) benign(0.01) TCGA-55-7907-01 1 51171477 51171477 C A FAF1 Missense_Mutation p.G213V 0.15 deleterious(0.01) possibly_damaging(0.747) TCGA-55-7907-01 1 51171478 51171478 C A FAF1 Nonsense_Mutation p.G213* 0.14 TCGA-55-7907-01 1 52811939 52811939 A T ZFYVE9 3'UTR 0.22 TCGA-55-7907-01 1 53164010 53164010 G T COA7 5'UTR 0.24 TCGA-55-7907-01 1 55066961 55066961 G A ACOT11 Missense_Mutation p.V302M 0.06 deleterious(0.02) possibly_damaging(0.875) TCGA-55-7907-01 1 57349308 57349308 C T C8A Missense_Mutation p.S270L 0.43 deleterious(0) probably_damaging(0.958) TCGA-55-7907-01 1 57476916 57476916 G C DAB1 Missense_Mutation p.P492A 0.14 tolerated(0.05) possibly_damaging(0.835) TCGA-55-7907-01 1 6341241 6341241 C G ACOT7 Missense_Mutation p.R322P 0.22 deleterious(0.03) benign(0.032) TCGA-55-7907-01 1 6631250 6631250 T A TAS1R1 Missense_Mutation p.L158Q 0.28 deleterious(0) probably_damaging(0.961) TCGA-55-7907-01 1 6704656 6704656 G A DNAJC11 Silent p.V353V 0.25 TCGA-55-7907-01 1 67105493 67105493 G T SGIP1 Missense_Mutation p.A69S 0.14 tolerated(0.07) benign(0.012) TCGA-55-7907-01 1 67145358 67145358 C A SGIP1 Intron 0.13 TCGA-55-7907-01 1 70504868 70504868 G T LRRC7 Nonsense_Mutation p.E1083* 0.31 TCGA-55-7907-01 1 77510192 77510192 C A ST6GALNAC5 Missense_Mutation p.L189M 0.14 probably_damaging(1) TCGA-55-7907-01 1 91447911 91447911 C T ZNF644 5'UTR 0.28 TCGA-55-7907-01 1 97658647 97658647 C A DPYD Missense_Mutation p.R867L 0.20 tolerated(0.24) benign(0) TCGA-55-7907-01 1 99771548 99771548 T C LPPR4 Missense_Mutation p.V425A 0.20 tolerated(0.28) benign(0.034) TCGA-55-7907-01 20 10030742 10030742 A - ANKEF1 Frame_Shift_Del p.K510Rfs*11 0.28 TCGA-55-7907-01 20 13894500 13894500 G T SEL1L2 Silent p.G159G 0.53 TCGA-55-7907-01 20 1457984 1457984 T A SIRPB2 Silent p.T286T 0.43 TCGA-55-7907-01 20 20349229 20349229 G A INSM1 Silent p.V106V 0.55 TCGA-55-7907-01 20 30064329 30064329 C A REM1 Silent p.G27G 0.26 TCGA-55-7907-01 20 3052344 3052344 G A OXT Missense_Mutation p.A15T 0.62 tolerated(0.07) possibly_damaging(0.449) TCGA-55-7907-01 20 31390254 31390254 G T DNMT3B Missense_Mutation p.G737C 0.32 deleterious(0) probably_damaging(1) TCGA-55-7907-01 20 31685484 31685484 C A BPIFB4 Missense_Mutation p.P487Q 0.27 deleterious(0) probably_damaging(1) TCGA-55-7907-01 20 31825642 31825642 T A BPIFA1 Nonsense_Mutation p.L42* 0.25 TCGA-55-7907-01 20 31887734 31887734 G A BPIFB1 Missense_Mutation p.E231K 0.27 tolerated(0.2) benign(0.01) TCGA-55-7907-01 20 34519296 34519296 C T PHF20 Nonsense_Mutation p.Q744* 0.21 TCGA-55-7907-01 20 35060775 35060775 C T DLGAP4 Missense_Mutation p.R219C 0.13 deleterious(0.04) benign(0.004) TCGA-55-7907-01 20 35434280 35434280 C A SOGA1 Silent p.T965T 0.21 TCGA-55-7907-01 20 3672221 3672221 G T SIGLEC1 Missense_Mutation p.L1453M 0.54 tolerated(0.11) probably_damaging(0.986) TCGA-55-7907-01 20 37146502 37146502 A G RALGAPB Missense_Mutation p.S426G 0.16 tolerated(0.32) benign(0.264) TCGA-55-7907-01 20 42157977 42157977 C T L3MBTL1 Missense_Mutation p.P320L 0.30 deleterious(0) probably_damaging(1) TCGA-55-7907-01 20 43681760 43681760 A C STK4 Intron 0.24 TCGA-55-7907-01 20 43723683 43723683 A T KCNS1 Missense_Mutation p.L470Q 0.20 tolerated(0.25) probably_damaging(0.999) TCGA-55-7907-01 20 44673655 44673655 C A SLC12A5 Missense_Mutation p.P505Q 0.32 deleterious(0) probably_damaging(0.977) TCGA-55-7907-01 20 46365579 46365579 T A SULF2 Missense_Mutation p.I95F 0.33 tolerated(0.18) possibly_damaging(0.876) TCGA-55-7907-01 20 47990535 47990535 G T KCNB1 Missense_Mutation p.P521H 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-7907-01 20 48140725 48140725 G T PTGIS Missense_Mutation p.S242Y 0.28 deleterious(0) probably_damaging(0.997) TCGA-55-7907-01 20 54579045 54579045 C A CBLN4 Silent p.G61G 0.35 TCGA-55-7907-01 20 54824378 54824378 A T MC3R Missense_Mutation p.K160M 0.27 deleterious(0) probably_damaging(0.987) TCGA-55-7907-01 20 57566480 57566480 C T NELFCD Silent p.S374S 0.15 TCGA-55-7907-01 20 57769446 57769446 G T ZNF831 Silent p.P1124P 0.24 TCGA-55-7907-01 20 60508126 60508126 G A CDH4 Missense_Mutation p.D775N 0.33 deleterious(0) probably_damaging(0.998) TCGA-55-7907-01 20 61598070 61598070 C T SLC17A9 Missense_Mutation p.A378V 0.29 tolerated(0.11) benign(0.14) TCGA-55-7907-01 20 62223416 62223416 T A GMEB2 Missense_Mutation p.Q304L 0.33 deleterious(0.05) probably_damaging(0.997) TCGA-55-7907-01 20 62321784 62321784 G C RTEL1 Missense_Mutation p.Q825H 0.30 deleterious(0.04) benign(0.012) TCGA-55-7907-01 20 62593623 62593623 C T ZNF512B Intron 0.22 TCGA-55-7907-01 20 8637874 8637874 G T PLCB1 Missense_Mutation p.R213I 0.36 deleterious(0.03) benign(0.011) TCGA-55-7907-01 20 9560828 9560828 G T PAK7 Nonsense_Mutation p.Y318* 0.45 TCGA-55-7907-01 21 10969100 10969100 C T TPTE Missense_Mutation p.A50T 0.16 tolerated(0.6) benign(0.003) TCGA-55-7907-01 21 11021201 11021201 G T BAGE2 RNA 0.07 TCGA-55-7907-01 21 32253274 32253274 G T KRTAP11-1 3'UTR 0.42 TCGA-55-7907-01 21 32598231 32598231 G T TIAM1 Silent p.T540T 0.34 TCGA-55-7907-01 21 37713755 37713755 G T MORC3 Nonsense_Mutation p.E223* 0.33 TCGA-55-7907-01 21 43833560 43833560 G T UBASH3A Nonsense_Mutation p.G199* 0.50 TCGA-55-7907-01 22 16287778 16287778 C T POTEH Silent p.R36R 0.50 TCGA-55-7907-01 22 16449021 16449021 C G OR11H1 Missense_Mutation p.V262L 0.18 deleterious(0) benign(0.172) TCGA-55-7907-01 22 17072823 17072823 G T CCT8L2 Nonsense_Mutation p.C206* 0.18 TCGA-55-7907-01 22 17308432 17308432 T C HSFY1P1 RNA 0.41 TCGA-55-7907-01 22 19121734 19121734 C A DGCR14 Missense_Mutation p.R469L 0.22 deleterious(0) probably_damaging(0.997) TCGA-55-7907-01 22 19379649 19379649 C A HIRA Missense_Mutation p.S304I 0.27 deleterious(0) probably_damaging(0.998) TCGA-55-7907-01 22 23237856 23237856 C A IGLL5 Silent p.A209A 0.18 TCGA-55-7907-01 22 23247198 23247198 C G IGLJ3 Silent p.T48T 0.14 TCGA-55-7907-01 22 24124584 24124584 G A MMP11 Missense_Mutation p.R416Q 0.17 tolerated(0.11) benign(0.036) TCGA-55-7907-01 22 26224872 26224872 T C MYO18B Silent p.H972H 0.39 TCGA-55-7907-01 22 26351286 26351286 C A MYO18B Missense_Mutation p.L2038M 0.31 deleterious(0.02) probably_damaging(1) TCGA-55-7907-01 22 26701954 26701954 G A SEZ6L Missense_Mutation p.G453E 0.22 deleterious(0) probably_damaging(1) TCGA-55-7907-01 22 32756382 32756382 C A RFPL3 Missense_Mutation p.P173T 0.32 deleterious(0.04) possibly_damaging(0.775) TCGA-55-7907-01 22 33733749 33733749 C T LARGE Silent p.K390K 0.20 TCGA-55-7907-01 22 37622726 37622726 C G RAC2 Missense_Mutation p.C189S 0.27 deleterious_low_confidence(0) probably_damaging(0.909) TCGA-55-7907-01 22 38109231 38109231 C T TRIOBP Missense_Mutation p.S90L 0.33 tolerated_low_confidence(0.05) benign(0.021) TCGA-55-7907-01 22 38111769 38111769 G T TRIOBP Splice_Site p.X153_splice 0.27 TCGA-55-7907-01 22 38823370 38823370 C A KCNJ4 Silent p.V256V 0.40 TCGA-55-7907-01 22 39883551 39883551 C T MGAT3 Missense_Mutation p.P67S 0.33 tolerated_low_confidence(0.07) benign(0.039) TCGA-55-7907-01 22 41783641 41783641 C T TEF Silent p.I148I 0.25 TCGA-55-7907-01 22 43203164 43203164 C G ARFGAP3 Missense_Mutation p.E442D 0.21 tolerated(0.06) benign(0.082) TCGA-55-7907-01 22 43687139 43687139 C A SCUBE1 Missense_Mutation p.V133F 0.36 deleterious(0.03) probably_damaging(0.994) TCGA-55-7907-01 22 43831041 43831042 - A MPPED1 Frame_Shift_Ins p.I105Nfs*17 0.20 TCGA-55-7907-01 22 45683165 45683165 G C UPK3A Silent p.L107L 0.22 TCGA-55-7907-01 22 46652574 46652574 C T PKDREJ Missense_Mutation p.E2216K 0.23 tolerated(0.06) benign(0.161) TCGA-55-7907-01 2 101967338 101967338 A T CREG2 3'UTR 0.23 TCGA-55-7907-01 2 103053770 103053770 G A IL18RAP Silent p.S226S 0.14 TCGA-55-7907-01 2 103090196 103090196 G T SLC9A4 5'UTR 0.11 TCGA-55-7907-01 2 103120124 103120127 CTTA - SLC9A4 Frame_Shift_Del p.Y314* 0.17 TCGA-55-7907-01 2 107459530 107459530 C A ST6GAL2 Missense_Mutation p.A302S 0.33 probably_damaging(0.992) TCGA-55-7907-01 2 11053234 11053234 G T KCNF1 Missense_Mutation p.A228S 0.29 tolerated(0.06) possibly_damaging(0.799) TCGA-55-7907-01 2 112615883 112615883 C A ANAPC1 Missense_Mutation p.R453L 0.21 tolerated(0.25) benign(0.209) TCGA-55-7907-01 2 125504840 125504840 C A CNTNAP5 Silent p.S703S 0.44 TCGA-55-7907-01 2 128408738 128408738 C G GPR17 Silent p.R171R 0.15 TCGA-55-7907-01 2 12880753 12880753 C G TRIB2 Missense_Mutation p.L289V 0.49 deleterious(0) probably_damaging(0.96) TCGA-55-7907-01 2 130949494 130949494 G T TUBA3E Silent p.A421A 0.13 TCGA-55-7907-01 2 131126739 131126739 G C PTPN18 Missense_Mutation p.E150Q 0.19 tolerated(0.2) benign(0.244) TCGA-55-7907-01 2 132021826 132021826 G T POTEE Missense_Mutation p.S933I 0.23 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-55-7907-01 2 136437836 136437836 A T R3HDM1 Missense_Mutation p.T766S 0.45 tolerated(0.23) benign(0.004) TCGA-55-7907-01 2 139322383 139322383 G A SPOPL Missense_Mutation p.E315K 0.24 tolerated(0.18) benign(0.065) TCGA-55-7907-01 2 141110584 141110584 C G LRP1B Missense_Mutation p.G3863A 0.29 probably_damaging(0.939) TCGA-55-7907-01 2 141202233 141202233 T G LRP1B Missense_Mutation p.Q3358P 0.14 benign(0.418) TCGA-55-7907-01 2 141260667 141260667 G T LRP1B Silent p.R2843R 0.08 TCGA-55-7907-01 2 141680656 141680656 C A LRP1B Missense_Mutation p.C1066F 0.14 probably_damaging(0.931) TCGA-55-7907-01 2 1426896 1426896 G A TPO Missense_Mutation p.M58I 0.26 tolerated(0.19) benign(0.005) TCGA-55-7907-01 2 145161502 145161502 T C ZEB2 Missense_Mutation p.H263R 0.53 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 2 152420221 152420221 C G NEB Missense_Mutation p.E6198Q 0.29 probably_damaging(0.978) TCGA-55-7907-01 2 152500419 152500419 G T NEB Missense_Mutation p.D2623E 0.21 probably_damaging(0.935) TCGA-55-7907-01 2 152989690 152989690 C T STAM2 Missense_Mutation p.E323K 0.13 deleterious(0.02) benign(0.109) TCGA-55-7907-01 2 155295238 155295238 G T GALNT13 Missense_Mutation p.E510D 0.11 tolerated(0.58) benign(0.022) TCGA-55-7907-01 2 15644305 15644305 T A NBAS Missense_Mutation p.L306F 0.23 tolerated(0.35) benign(0.091) TCGA-55-7907-01 2 159477908 159477908 G C PKP4 Missense_Mutation p.R193T 0.41 deleterious(0) possibly_damaging(0.821) TCGA-55-7907-01 2 160035567 160035567 C T TANC1 Silent p.F801F 0.26 TCGA-55-7907-01 2 162279953 162279953 G T TBR1 Missense_Mutation p.G422W 0.63 deleterious(0) possibly_damaging(0.859) TCGA-55-7907-01 2 165559624 165559624 T C COBLL1 Silent p.T444T 0.46 TCGA-55-7907-01 2 166747379 166747379 C T TTC21B Missense_Mutation p.G1024R 0.12 deleterious(0) probably_damaging(0.972) TCGA-55-7907-01 2 167992470 167992470 G T XIRP2 Missense_Mutation p.G154W 0.27 probably_damaging(0.947) TCGA-55-7907-01 2 169571583 169571583 G A CERS6 Missense_Mutation p.A228T 0.49 tolerated(0.29) benign(0.012) TCGA-55-7907-01 2 172309638 172309638 G C DCAF17 Missense_Mutation p.G181A 0.06 deleterious(0.02) possibly_damaging(0.726) TCGA-55-7907-01 2 173855632 173855632 G C RAPGEF4 Missense_Mutation p.G490A 0.32 tolerated(0.2) benign(0.254) TCGA-55-7907-01 2 178483321 178483321 C G TTC30A Missense_Mutation p.E37Q 0.36 tolerated(1) benign(0.004) TCGA-55-7907-01 2 179428686 179428686 C G TTN Missense_Mutation p.W27391C 0.14 TCGA-55-7907-01 2 179430746 179430746 C G TTN Missense_Mutation p.E26705Q 0.19 TCGA-55-7907-01 2 179432829 179432829 C T TTN Silent p.Q26010Q 0.14 TCGA-55-7907-01 2 179436812 179436812 C T TTN Missense_Mutation p.E24683K 0.21 TCGA-55-7907-01 2 179436945 179436945 C T TTN Silent p.E24638E 0.26 TCGA-55-7907-01 2 179465646 179465646 A C TTN Missense_Mutation p.V18662G 0.18 TCGA-55-7907-01 2 179480037 179480037 G T TTN Missense_Mutation p.T16212K 0.09 TCGA-55-7907-01 2 179588354 179588354 C A TTN Missense_Mutation p.S7158I 0.19 TCGA-55-7907-01 2 179615829 179615829 A T TTN Intron 0.43 TCGA-55-7907-01 2 179638602 179638602 G T TTN Silent p.A2431A 0.11 TCGA-55-7907-01 2 179645895 179645895 C A TTN Missense_Mutation p.R1159L 0.53 TCGA-55-7907-01 2 182413481 182413481 C T CERKL Silent p.L359L 0.12 TCGA-55-7907-01 2 182783599 182783599 G A SSFA2 Missense_Mutation p.E995K 0.27 deleterious(0.04) possibly_damaging(0.615) TCGA-55-7907-01 2 18768815 18768816 - G NT5C1B Frame_Shift_Ins p.E25Afs*7 0.25 TCGA-55-7907-01 2 189857656 189857656 C A COL3A1 Missense_Mutation p.P347H 0.06 unknown(0) TCGA-55-7907-01 2 192543851 192543851 G A NABP1 Missense_Mutation p.R76K 0.20 tolerated(1) benign(0.013) TCGA-55-7907-01 2 201438346 201438346 C G SGOL2 Missense_Mutation p.H1093D 0.16 tolerated(0.55) benign(0.168) TCGA-55-7907-01 2 202603421 202603421 C A ALS2 Nonsense_Mutation p.G797* 0.15 TCGA-55-7907-01 2 202901057 202901057 A T FZD7 Nonsense_Mutation p.R563* 0.44 TCGA-55-7907-01 2 207026632 207026632 C T EEF1B2 Intron 0.10 TCGA-55-7907-01 2 210574909 210574909 A T MAP2 Silent p.P1668P 0.50 TCGA-55-7907-01 2 210642116 210642116 A T UNC80 Missense_Mutation p.S145C 0.15 probably_damaging(0.965) TCGA-55-7907-01 2 211527880 211527880 G T CPS1 Missense_Mutation p.A1327S 0.12 deleterious(0.03) possibly_damaging(0.848) TCGA-55-7907-01 2 21233628 21233628 C T APOB Missense_Mutation p.D2038N 0.34 benign(0.011) TCGA-55-7907-01 2 212426702 212426702 A C ERBB4 Missense_Mutation p.L805V 0.10 deleterious(0) possibly_damaging(0.755) TCGA-55-7907-01 2 212537983 212537983 C A ERBB4 Splice_Site p.X541_splice 0.07 TCGA-55-7907-01 2 213921620 213921620 C T IKZF2 Missense_Mutation p.D115N 0.24 deleterious(0) probably_damaging(0.977) TCGA-55-7907-01 2 219509212 219509212 C A ZNF142 Missense_Mutation p.G676V 0.40 tolerated(0.06) probably_damaging(0.953) TCGA-55-7907-01 2 219888887 219888887 C G CCDC108 Missense_Mutation p.Q815H 0.14 tolerated(0.06) possibly_damaging(0.521) TCGA-55-7907-01 2 219920417 219920417 C A IHH Nonsense_Mutation p.E250* 0.68 TCGA-55-7907-01 2 220136173 220136173 C A TUBA4B RNA 0.19 TCGA-55-7907-01 2 220167204 220167204 G - PTPRN Frame_Shift_Del p.R217Vfs*101 0.33 TCGA-55-7907-01 2 220329177 220329177 C A SPEG Missense_Mutation p.R910S 0.28 probably_damaging(0.982) TCGA-55-7907-01 2 224822340 224822340 C T MRPL44 Silent p.L51L 0.24 TCGA-55-7907-01 2 224862913 224862913 A G SERPINE2 Missense_Mutation p.C148R 0.24 tolerated(0.25) probably_damaging(0.934) TCGA-55-7907-01 2 227886843 227886843 T A COL4A4 Silent p.P1379P 0.21 TCGA-55-7907-01 2 230456418 230456418 G T DNER Missense_Mutation p.P155T 0.13 tolerated(0.18) possibly_damaging(0.662) TCGA-55-7907-01 2 231033739 231033739 C T SP110 3'UTR 0.31 TCGA-55-7907-01 2 232156095 232156095 C G ARMC9 Missense_Mutation p.I552M 0.14 tolerated(0.25) benign(0.028) TCGA-55-7907-01 2 233321707 233321707 A T ALPI Silent p.A133A 0.11 TCGA-55-7907-01 2 233393274 233393274 G T CHRND Silent p.V139V 0.47 TCGA-55-7907-01 2 233393335 233393335 T A CHRND Missense_Mutation p.F160I 0.14 deleterious(0) probably_damaging(0.939) TCGA-55-7907-01 2 233791856 233791856 C A NGEF Nonsense_Mutation p.E142* 0.17 TCGA-55-7907-01 2 233791857 233791857 C A NGEF Missense_Mutation p.E141D 0.16 tolerated(0.07) benign(0.016) TCGA-55-7907-01 2 233839474 233839474 G C NGEF Missense_Mutation p.Q43E 0.18 tolerated_low_confidence(0.4) benign(0) TCGA-55-7907-01 2 233839632 233839632 G A NGEF 5'UTR 0.23 TCGA-55-7907-01 2 234191392 234191392 G C ATG16L1 Missense_Mutation p.R399P 0.57 deleterious(0) probably_damaging(0.921) TCGA-55-7907-01 2 234526798 234526798 C A UGT1A8 Missense_Mutation p.P149T 0.16 deleterious(0.02) probably_damaging(0.996) TCGA-55-7907-01 2 234526799 234526799 C A UGT1A8 Missense_Mutation p.P149H 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 2 234621740 234621740 C - UGT1A5 Frame_Shift_Del p.T36Lfs*30 0.13 TCGA-55-7907-01 2 234878934 234878934 G T TRPM8 Missense_Mutation p.W740L 0.48 tolerated(1) probably_damaging(0.996) TCGA-55-7907-01 2 237172851 237172851 C T ASB18 Silent p.V46V 0.15 TCGA-55-7907-01 2 238244935 238244935 C A COL6A3 Silent p.V2936V 0.46 TCGA-55-7907-01 2 241715308 241715308 G A KIF1A Silent p.Y306Y 0.05 TCGA-55-7907-01 2 242066662 242066662 C G PASK Missense_Mutation p.E556D 0.11 tolerated(0.15) possibly_damaging(0.493) TCGA-55-7907-01 2 242155594 242155594 G A ANO7 Nonsense_Mutation p.W692* 0.17 TCGA-55-7907-01 2 24222692 24222692 G C UBXN2A Missense_Mutation p.Q245H 0.41 deleterious(0) probably_damaging(1) TCGA-55-7907-01 2 24239823 24239823 C G MFSD2B Missense_Mutation p.F152L 0.44 deleterious(0.01) benign(0.072) TCGA-55-7907-01 2 242573057 242573057 T A THAP4 Missense_Mutation p.E172V 0.22 deleterious_low_confidence(0.02) benign(0.018) TCGA-55-7907-01 2 242573058 242573058 C A THAP4 Nonsense_Mutation p.E172* 0.22 TCGA-55-7907-01 2 24516556 24516556 C G ITSN2 Splice_Site p.X575_splice 0.12 TCGA-55-7907-01 2 24933855 24933855 C T NCOA1 Missense_Mutation p.A825V 0.22 deleterious(0.02) benign(0.002) TCGA-55-7907-01 2 25061491 25061491 C A ADCY3 Silent p.G452G 0.36 TCGA-55-7907-01 2 26426983 26426983 T C HADHA Missense_Mutation p.K390E 0.37 deleterious(0) probably_damaging(1) TCGA-55-7907-01 2 26915939 26915939 G T KCNK3 Missense_Mutation p.V66L 0.43 deleterious(0.04) probably_damaging(0.943) TCGA-55-7907-01 2 26997191 26997191 G T SLC35F6 Missense_Mutation p.Q50H 0.18 deleterious(0) probably_damaging(0.998) TCGA-55-7907-01 2 28812885 28812885 G T PLB1 Missense_Mutation p.G677V 0.31 deleterious(0) probably_damaging(0.998) TCGA-55-7907-01 2 29443644 29443644 G T ALK Silent p.P1191P 0.16 TCGA-55-7907-01 2 37208830 37208830 G C HEATR5B Missense_Mutation p.L2007V 0.22 deleterious(0) probably_damaging(0.976) TCGA-55-7907-01 2 39411789 39411789 C G CDKL4 Splice_Site p.X246_splice 0.19 TCGA-55-7907-01 2 42522520 42522520 G A EML4 Splice_Site p.X452_splice 0.32 TCGA-55-7907-01 2 44079786 44079786 C G ABCG8 Missense_Mutation p.A248G 0.32 deleterious(0) possibly_damaging(0.899) TCGA-55-7907-01 2 46986074 46986074 A T SOCS5 Silent p.S135S 0.34 TCGA-55-7907-01 2 48050495 48050495 T A FBXO11 Missense_Mutation p.Y468F 0.56 tolerated(0.15) probably_damaging(0.998) TCGA-55-7907-01 2 50850559 50850559 C A NRXN1 Missense_Mutation p.V376F 0.32 deleterious(0) probably_damaging(0.998) TCGA-55-7907-01 2 50850560 50850560 C A NRXN1 Silent p.L375L 0.32 TCGA-55-7907-01 2 54873410 54873410 G C SPTBN1 Missense_Mutation p.S1555T 0.19 tolerated(0.51) benign(0.079) TCGA-55-7907-01 2 56104957 56104957 G A EFEMP1 Silent p.C228C 0.29 TCGA-55-7907-01 2 675580 675580 C A TMEM18 Silent p.A36A 0.41 TCGA-55-7907-01 2 69015026 69015026 C A ARHGAP25 Missense_Mutation p.S135Y 0.36 deleterious(0) probably_damaging(0.995) TCGA-55-7907-01 2 69302789 69302789 A T ANTXR1 Missense_Mutation p.Q187L 0.31 deleterious(0) probably_damaging(0.994) TCGA-55-7907-01 2 69734643 69734643 C G AAK1 Missense_Mutation p.G692R 0.42 tolerated(0.54) possibly_damaging(0.693) TCGA-55-7907-01 2 71741043 71741043 G T DYSF Missense_Mutation p.D251Y 0.24 deleterious(0) probably_damaging(0.99) TCGA-55-7907-01 2 71883330 71883330 G T DYSF Missense_Mutation p.E1555D 0.38 tolerated(0.19) benign(0.002) TCGA-55-7907-01 2 74274555 74274555 C T TET3 Missense_Mutation p.S369F 0.35 deleterious(0) benign(0.192) TCGA-55-7907-01 2 75278480 75278480 A T TACR1 Missense_Mutation p.L277H 0.27 deleterious(0) possibly_damaging(0.698) TCGA-55-7907-01 2 79255452 79255452 C A REG3G 3'UTR 0.24 TCGA-55-7907-01 2 79350405 79350405 C A REG1A 3'UTR 0.33 TCGA-55-7907-01 2 86371621 86371621 C G IMMT Missense_Mutation p.E683Q 0.24 tolerated(0.06) possibly_damaging(0.723) TCGA-55-7907-01 2 87042596 87042596 T C CD8B 3'Flank 0.23 TCGA-55-7907-01 2 8870855 8870855 G C KIDINS220 Missense_Mutation p.L1771V 0.23 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-55-7907-01 2 89399510 89399510 C A IGKV1-16 Missense_Mutation p.A65S 0.20 tolerated(0.34) benign(0.034) TCGA-55-7907-01 2 89475894 89475894 C G IGKV2-24 Missense_Mutation p.G93A 0.24 deleterious(0) possibly_damaging(0.825) TCGA-55-7907-01 2 89986975 89986975 A G IGKV2D-29 Missense_Mutation p.R86G 0.28 deleterious(0) possibly_damaging(0.744) TCGA-55-7907-01 2 90229325 90229325 G A IGKV1D-42 Missense_Mutation p.E49K 0.34 deleterious(0.02) benign(0.204) TCGA-55-7907-01 2 95514962 95514962 C A RNU6-1320P 5'Flank 0.20 TCGA-55-7907-01 2 96798449 96798449 C G ASTL Missense_Mutation p.S156T 0.15 tolerated(0.28) possibly_damaging(0.593) TCGA-55-7907-01 2 98872621 98872621 C A VWA3B Missense_Mutation p.Q943K 0.10 deleterious(0.01) benign(0.354) TCGA-55-7907-01 2 99012508 99012508 A C CNGA3 Missense_Mutation p.E292A 0.51 deleterious(0.01) probably_damaging(0.997) TCGA-55-7907-01 3 107097331 107097331 C A CCDC54 Silent p.P299P 0.31 TCGA-55-7907-01 3 108174688 108174688 T A MYH15 Silent p.P739P 0.33 TCGA-55-7907-01 3 108394644 108394644 C G DZIP3 Nonsense_Mutation p.S902* 0.24 TCGA-55-7907-01 3 111981885 111981885 C A SLC9C1 Missense_Mutation p.W361C 0.23 deleterious(0) probably_damaging(1) TCGA-55-7907-01 3 112650004 112650004 A G CD200R1 Missense_Mutation p.C51R 0.12 tolerated(0.57) benign(0.034) TCGA-55-7907-01 3 113524372 113524372 G T ATP6V1A Missense_Mutation p.K587N 0.16 tolerated(0.23) benign(0.023) TCGA-55-7907-01 3 113524373 113524373 G T ATP6V1A Splice_Site p.X587_splice 0.14 TCGA-55-7907-01 3 115529206 115529206 C A LSAMP Missense_Mutation p.W325C 0.17 deleterious(0.02) unknown(0) TCGA-55-7907-01 3 119905592 119905592 G A GPR156 Silent p.A171A 0.27 TCGA-55-7907-01 3 121206971 121206971 G C POLQ Missense_Mutation p.Q1603E 0.23 tolerated(0.7) benign(0.035) TCGA-55-7907-01 3 122354909 122354909 C G PARP15 Missense_Mutation p.Q667E 0.22 deleterious(0) probably_damaging(0.983) TCGA-55-7907-01 3 122446803 122446803 G A PARP14 Missense_Mutation p.G1696S 0.29 deleterious(0) probably_damaging(1) TCGA-55-7907-01 3 125877422 125877422 C A ALDH1L1 Missense_Mutation p.G73V 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-7907-01 3 125877423 125877423 C A ALDH1L1 Nonsense_Mutation p.G73* 0.30 TCGA-55-7907-01 3 128181664 128181664 G T DNAJB8 Missense_Mutation p.P142Q 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-55-7907-01 3 129140221 129140221 T A EFCAB12 Missense_Mutation p.R159W 0.27 deleterious(0.01) probably_damaging(0.961) TCGA-55-7907-01 3 129547252 129547252 C G TMCC1 5'UTR 0.38 TCGA-55-7907-01 3 130285953 130285953 C A COL6A6 Missense_Mutation p.H564N 0.24 tolerated(0.69) benign(0.001) TCGA-55-7907-01 3 130293197 130293197 G C COL6A6 Silent p.L1125L 0.40 TCGA-55-7907-01 3 130380837 130380837 C T COL6A6 Missense_Mutation p.H2063Y 0.12 tolerated(0.17) possibly_damaging(0.89) TCGA-55-7907-01 3 130398210 130398210 C A PIK3R4 Missense_Mutation p.Q1342H 0.32 deleterious(0) probably_damaging(0.997) TCGA-55-7907-01 3 132403529 132403529 C T NPHP3 Missense_Mutation p.E1147K 0.35 tolerated(0.08) possibly_damaging(0.708) TCGA-55-7907-01 3 140178428 140178428 C A CLSTN2 Missense_Mutation p.L347M 0.32 deleterious(0) probably_damaging(0.946) TCGA-55-7907-01 3 140282874 140282874 G T CLSTN2 Missense_Mutation p.V852L 0.26 tolerated(0.07) benign(0.082) TCGA-55-7907-01 3 140406626 140406626 G T TRIM42 Missense_Mutation p.D368Y 0.31 tolerated(0.14) benign(0.002) TCGA-55-7907-01 3 146251271 146251271 G A PLSCR1 Missense_Mutation p.P27L 0.23 deleterious(0.01) benign(0.276) TCGA-55-7907-01 3 151166319 151166319 C A IGSF10 Nonsense_Mutation p.E484* 0.21 TCGA-55-7907-01 3 160232745 160232745 T C KPNA4 Intron 0.22 TCGA-55-7907-01 3 164785164 164785164 C A SI Missense_Mutation p.S200I 0.21 deleterious(0.01) possibly_damaging(0.479) TCGA-55-7907-01 3 167164224 167164224 A G SERPINI2 Missense_Mutation p.I366T 0.23 tolerated(0.06) benign(0.01) TCGA-55-7907-01 3 167240272 167240272 C A WDR49 Missense_Mutation p.A517S 0.28 tolerated(0.44) benign(0.017) TCGA-55-7907-01 3 170198544 170198544 G - SLC7A14 Frame_Shift_Del p.N510Ifs*7 0.19 TCGA-55-7907-01 3 173996667 173996667 A T NLGN1 Silent p.A292A 0.40 TCGA-55-7907-01 3 173997229 173997229 G T NLGN1 Missense_Mutation p.G480C 0.29 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 3 175184794 175184794 A G NAALADL2 Missense_Mutation p.H452R 0.28 tolerated(0.46) possibly_damaging(0.592) TCGA-55-7907-01 3 178525156 178525156 T A KCNMB2 5'UTR 0.19 TCGA-55-7907-01 3 178919301 178919301 A T PIK3CA Silent p.L262L 0.25 TCGA-55-7907-01 3 183273217 183273217 G C KLHL6 Missense_Mutation p.I75M 0.31 deleterious(0) possibly_damaging(0.699) TCGA-55-7907-01 3 183602624 183602624 C T PARL Missense_Mutation p.R4Q 0.32 tolerated_low_confidence(0.05) benign(0.003) TCGA-55-7907-01 3 184025763 184025763 G A PSMD2 Missense_Mutation p.G795E 0.21 deleterious(0) probably_damaging(0.952) TCGA-55-7907-01 3 185191263 185191263 A G MAP3K13 Missense_Mutation p.K715R 0.31 tolerated_low_confidence(0.63) benign(0.001) TCGA-55-7907-01 3 186954342 186954342 G T MASP1 Silent p.P439P 0.23 TCGA-55-7907-01 3 187419766 187419766 G T RTP2 Missense_Mutation p.H51N 0.24 tolerated(0.12) possibly_damaging(0.845) TCGA-55-7907-01 3 193080198 193080198 C A ATP13A5 Missense_Mutation p.G170C 0.31 deleterious(0) probably_damaging(1) TCGA-55-7907-01 3 195516489 195516489 G A MUC4 Silent p.S654S 0.25 TCGA-55-7907-01 3 196229811 196229811 C A RNF168 Silent p.T78T 0.44 TCGA-55-7907-01 3 197238927 197238927 C A BDH1 Missense_Mutation p.G291C 0.25 deleterious(0.03) probably_damaging(0.998) TCGA-55-7907-01 3 24174822 24174822 C T THRB Silent p.L290L 0.25 TCGA-55-7907-01 3 27760974 27760974 T C EOMES Splice_Site p.X346_splice 0.45 TCGA-55-7907-01 3 38414143 38414143 C T XYLB Intron 0.38 TCGA-55-7907-01 3 38524706 38524706 G T ACVR2B Silent p.V474V 0.28 TCGA-55-7907-01 3 39307287 39307287 G A CX3CR1 Silent p.I270I 0.26 TCGA-55-7907-01 3 4718357 4718357 C T ITPR1 Missense_Mutation p.R932W 0.10 tolerated(0.1) probably_damaging(0.998) TCGA-55-7907-01 3 51993908 51993908 C G PCBP4 Intron 0.44 TCGA-55-7907-01 3 52326349 52326349 G T GLYCTK Missense_Mutation p.S260I 0.46 deleterious(0) benign(0.37) TCGA-55-7907-01 3 52623229 52623229 G C PBRM1 Nonsense_Mutation p.S941* 0.40 TCGA-55-7907-01 3 53217201 53217201 G T PRKCD Silent p.A212A 0.23 TCGA-55-7907-01 3 58083619 58083619 C T FLNB Silent p.A354A 0.27 TCGA-55-7907-01 3 61989074 61989074 G T PTPRG Missense_Mutation p.G141V 0.28 tolerated(0.08) probably_damaging(0.998) TCGA-55-7907-01 3 62267340 62267340 G A PTPRG Missense_Mutation p.E1290K 0.38 deleterious(0.05) probably_damaging(0.917) TCGA-55-7907-01 3 75679964 75679964 C A MIR1324 RNA 0.05 TCGA-55-7907-01 3 98110437 98110437 C T OR5K3 Missense_Mutation p.H310Y 0.32 deleterious_low_confidence(0.04) benign(0.016) TCGA-55-7907-01 3 98251507 98251507 C A GPR15 Missense_Mutation p.S210R 0.22 tolerated(0.08) probably_damaging(0.95) TCGA-55-7907-01 4 100349332 100349332 C A ADH7 Splice_Site p.X107_splice 0.35 TCGA-55-7907-01 4 10566322 10566322 G T CLNK Silent p.T124T 0.28 TCGA-55-7907-01 4 106155435 106155435 G A TET2 Silent p.L112L 0.14 TCGA-55-7907-01 4 107956673 107956673 A G DKK2 Missense_Mutation p.S26P 0.10 tolerated(0.2) possibly_damaging(0.665) TCGA-55-7907-01 4 109931531 109931531 C A COL25A1 Nonsense_Mutation p.G141* 0.50 TCGA-55-7907-01 4 113351650 113351650 G A ALPK1 Missense_Mutation p.C316Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 4 114179283 114179283 T A ANK2 Silent p.A422A 0.37 TCGA-55-7907-01 4 115751022 115751022 C A NDST4 Missense_Mutation p.C808F 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-55-7907-01 4 115773937 115773937 C T NDST4 Missense_Mutation p.R587K 0.29 tolerated(1) benign(0.001) TCGA-55-7907-01 4 122784422 122784422 C A BBS7 Missense_Mutation p.D39Y 0.17 deleterious(0) possibly_damaging(0.898) TCGA-55-7907-01 4 122800867 122800867 C T TRPC3 3'UTR 0.10 TCGA-55-7907-01 4 123107222 123107222 A C KIAA1109 Silent p.T130T 0.20 TCGA-55-7907-01 4 126238361 126238361 G T FAT4 Silent p.V265V 0.38 TCGA-55-7907-01 4 126411120 126411120 G T FAT4 Missense_Mutation p.K4381N 0.16 benign(0.432) TCGA-55-7907-01 4 13603352 13603352 C A BOD1L1 Missense_Mutation p.E1724D 0.18 benign(0.179) TCGA-55-7907-01 4 138451859 138451859 G A PCDH18 Missense_Mutation p.P462S 0.17 tolerated(0.09) possibly_damaging(0.589) TCGA-55-7907-01 4 141543529 141543529 C A TBC1D9 Silent p.R1207R 0.33 TCGA-55-7907-01 4 141847210 141847210 G T RNF150 Missense_Mutation p.S303Y 0.19 tolerated(0.46) possibly_damaging(0.543) TCGA-55-7907-01 4 147561521 147561521 G T POU4F2 Missense_Mutation p.R264L 0.17 deleterious(0.01) probably_damaging(0.982) TCGA-55-7907-01 4 148463699 148463699 A T EDNRA Missense_Mutation p.I405F 0.34 tolerated(0.57) benign(0.002) TCGA-55-7907-01 4 153259062 153259062 A - FBXW7 Frame_Shift_Del p.A252Lfs*2 0.15 TCGA-55-7907-01 4 154644586 154644586 C G RNF175 Missense_Mutation p.L142F 0.42 tolerated(0.47) possibly_damaging(0.786) TCGA-55-7907-01 4 155219643 155219643 A G DCHS2 Silent p.S1486S 0.20 TCGA-55-7907-01 4 158281203 158281203 T A GRIA2 Silent p.I733I 0.31 TCGA-55-7907-01 4 162307403 162307403 G T FSTL5 Missense_Mutation p.D680E 0.39 deleterious(0) probably_damaging(0.984) TCGA-55-7907-01 4 162577522 162577522 C A FSTL5 Missense_Mutation p.R284S 0.11 deleterious(0) probably_damaging(0.968) TCGA-55-7907-01 4 162680600 162680600 G T FSTL5 Missense_Mutation p.D230E 0.28 deleterious(0) probably_damaging(0.97) TCGA-55-7907-01 4 164246676 164246676 A T NPY1R Missense_Mutation p.S312T 0.07 deleterious(0) probably_damaging(0.98) TCGA-55-7907-01 4 17516969 17516969 C G CLRN2 Missense_Mutation p.A27G 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-55-7907-01 4 17524522 17524522 C T CLRN2 Missense_Mutation p.L97F 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-55-7907-01 4 17524644 17524644 C A CLRN2 Silent p.I137I 0.33 TCGA-55-7907-01 4 177608569 177608569 G C VEGFC Missense_Mutation p.P306R 0.12 deleterious(0.01) probably_damaging(0.923) TCGA-55-7907-01 4 184567667 184567667 C A RWDD4 Missense_Mutation p.G169C 0.39 deleterious(0) probably_damaging(1) TCGA-55-7907-01 4 187084032 187084032 A C FAM149A Missense_Mutation p.M255L 0.40 tolerated(1) benign(0) TCGA-55-7907-01 4 1976409 1976409 C G WHSC1 Intron 0.14 TCGA-55-7907-01 4 22749107 22749107 C A GBA3 Missense_Mutation p.Q159K 0.12 tolerated(0.07) benign(0.053) TCGA-55-7907-01 4 22749243 22749243 C G GBA3 Missense_Mutation p.S204C 0.24 deleterious(0) possibly_damaging(0.801) TCGA-55-7907-01 4 25391839 25391839 A T ANAPC4 Silent p.T199T 0.05 TCGA-55-7907-01 4 25835118 25835118 C G SEL1L3 Missense_Mutation p.D312H 0.11 deleterious(0) probably_damaging(1) TCGA-55-7907-01 4 2826361 2826361 G A SH3BP2 Silent p.E144E 0.38 TCGA-55-7907-01 4 36160403 36160403 G A ARAP2 Nonsense_Mutation p.Q901* 0.13 TCGA-55-7907-01 4 38799406 38799406 C A TLR1 Silent p.P349P 0.29 TCGA-55-7907-01 4 39436334 39436334 C T KLB Missense_Mutation p.L444F 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-55-7907-01 4 41984291 41984291 C A DCAF4L1 Missense_Mutation p.A161E 0.23 deleterious(0.02) possibly_damaging(0.907) TCGA-55-7907-01 4 420315 420315 G C ABCA11P RNA 0.29 TCGA-55-7907-01 4 4393282 4393282 C G NSG1 Silent p.T70T 0.17 TCGA-55-7907-01 4 44176951 44176951 G - KCTD8 Frame_Shift_Del p.K428Rfs*7 0.17 TCGA-55-7907-01 4 46043194 46043194 C A GABRG1 Silent p.G403G 0.25 TCGA-55-7907-01 4 46252294 46252294 T A GABRA2 3'UTR 0.14 TCGA-55-7907-01 4 46930629 46930629 C A GABRA4 Silent p.R426R 0.21 TCGA-55-7907-01 4 46976356 46976356 G T GABRA4 Missense_Mutation p.T205K 0.17 tolerated(0.78) probably_damaging(1) TCGA-55-7907-01 4 47589211 47589211 C G ATP10D Missense_Mutation p.A1310G 0.25 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 4 48147115 48147115 C A TEC Missense_Mutation p.S484I 0.13 tolerated(0.14) possibly_damaging(0.797) TCGA-55-7907-01 4 48503687 48503687 A G FRYL Missense_Mutation p.Y2849H 0.16 tolerated(0.07) probably_damaging(0.998) TCGA-55-7907-01 4 52863992 52863992 C G LRRC66 Missense_Mutation p.D260H 0.28 tolerated(0.33) benign(0.014) TCGA-55-7907-01 4 55156608 55156608 G T PDGFRA Missense_Mutation p.W1003C 0.33 tolerated(0.18) possibly_damaging(0.619) TCGA-55-7907-01 4 5624387 5624387 C A EVC2 Missense_Mutation p.G793V 0.20 tolerated(0.13) benign(0.424) TCGA-55-7907-01 4 56428761 56428761 C G PDCL2 Missense_Mutation p.L127F 0.22 deleterious(0) possibly_damaging(0.843) TCGA-55-7907-01 4 57182568 57182568 C T KIAA1211 Missense_Mutation p.P967L 0.30 deleterious(0) possibly_damaging(0.851) TCGA-55-7907-01 4 57340325 57340325 G C SRP72 Missense_Mutation p.V154L 0.17 deleterious(0) probably_damaging(0.986) TCGA-55-7907-01 4 59449 59449 G T ZNF595 Missense_Mutation p.G44C 0.04 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-7907-01 4 5961091 5961091 G T C4orf50 3'UTR 0.37 TCGA-55-7907-01 4 6082016 6082016 C T JAKMIP1 Silent p.A375A 0.23 TCGA-55-7907-01 4 62758597 62758597 T G LPHN3 Silent p.A500A 0.31 TCGA-55-7907-01 4 65147211 65147211 C T TECRL Missense_Mutation p.C300Y 0.14 deleterious(0) probably_damaging(1) TCGA-55-7907-01 4 69203027 69203027 C A YTHDC1 Nonsense_Mutation p.E201* 0.22 TCGA-55-7907-01 4 69337320 69337320 C A TMPRSS11E Missense_Mutation p.P157T 0.34 tolerated(0.72) probably_damaging(0.914) TCGA-55-7907-01 4 76489342 76489342 C A C4orf26 Missense_Mutation p.R44S 0.26 tolerated_low_confidence(0.35) benign(0) TCGA-55-7907-01 4 8007083 8007083 G A ABLIM2 Intron 0.17 TCGA-55-7907-01 4 85416970 85416970 T C NKX6-1 Missense_Mutation p.D233G 0.17 tolerated(0.06) unknown(0) TCGA-55-7907-01 4 90874219 90874219 A G MMRN1 Missense_Mutation p.I1113V 0.30 deleterious(0.01) benign(0.012) TCGA-55-7907-01 4 94006321 94006321 T C GRID2 Silent p.D140D 0.14 TCGA-55-7907-01 4 94547483 94547483 G T GRID2 Missense_Mutation p.D753Y 0.31 deleterious(0) probably_damaging(1) TCGA-55-7907-01 4 95198255 95198255 C T SMARCAD1 Missense_Mutation p.P676L 0.24 deleterious(0) possibly_damaging(0.844) TCGA-55-7907-01 4 95206137 95206137 G T SMARCAD1 Missense_Mutation p.S981I 0.18 deleterious(0) probably_damaging(0.965) TCGA-55-7907-01 5 11199587 11199587 C G CTNND2 Missense_Mutation p.D650H 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 5 121355030 121355030 C T SRFBP1 Silent p.L116L 0.30 TCGA-55-7907-01 5 128797435 128797435 C A ADAMTS19 Silent p.T238T 0.33 TCGA-55-7907-01 5 136314451 136314451 C A SPOCK1 Silent p.L404L 0.34 TCGA-55-7907-01 5 139219657 139219657 G T PSD2 Missense_Mutation p.A672S 0.30 tolerated(0.54) benign(0.005) TCGA-55-7907-01 5 140181070 140181070 C A PCDHA3 Nonsense_Mutation p.C96* 0.37 TCGA-55-7907-01 5 140181946 140181946 G T PCDHA3 Silent p.S388S 0.45 TCGA-55-7907-01 5 140228219 140228219 C T PCDHA9 Missense_Mutation p.R47C 0.32 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-55-7907-01 5 140229017 140229017 A T PCDHA9 Missense_Mutation p.S313C 0.33 tolerated_low_confidence(0.26) benign(0.049) TCGA-55-7907-01 5 140262681 140262681 T A PCDHA13 Missense_Mutation p.D276E 0.31 tolerated_low_confidence(1) benign(0.003) TCGA-55-7907-01 5 140517283 140517283 G C PCDHB5 Missense_Mutation p.G756A 0.39 deleterious_low_confidence(0.02) benign(0.27) TCGA-55-7907-01 5 140559295 140559295 C A PCDHB8 Silent p.P560P 0.35 TCGA-55-7907-01 5 140563898 140563898 G T PCDHB16 Missense_Mutation p.K588N 0.50 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-55-7907-01 5 140802988 140802988 G C PCDHGA11 Missense_Mutation p.G732R 0.25 tolerated_low_confidence(0.18) benign(0.018) TCGA-55-7907-01 5 148712335 148712335 G C AFAP1L1 Missense_Mutation p.D685H 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 5 149754931 149754931 G A TCOF1 Silent p.V506V 0.44 TCGA-55-7907-01 5 150682911 150682911 G T SLC36A3 Nonsense_Mutation p.S2* 0.50 TCGA-55-7907-01 5 156565705 156565705 T C MED7 3'UTR 0.42 TCGA-55-7907-01 5 156946857 156946857 C A ADAM19 Missense_Mutation p.R197L 0.47 tolerated(0.69) benign(0.232) TCGA-55-7907-01 5 15936592 15936592 G T FBXL7 Missense_Mutation p.R258L 0.30 tolerated(0.31) benign(0.103) TCGA-55-7907-01 5 16701710 16701710 C A MYO10 Nonsense_Mutation p.E932* 0.29 TCGA-55-7907-01 5 167379615 167379615 G T TENM2 Missense_Mutation p.Q245H 0.80 tolerated_low_confidence(0.62) possibly_damaging(0.855) TCGA-55-7907-01 5 167991059 167991059 C A PANK3 Missense_Mutation p.G216V 0.47 deleterious(0) probably_damaging(1) TCGA-55-7907-01 5 176056603 176056603 G T SNCB Missense_Mutation p.A18D 0.37 deleterious(0) possibly_damaging(0.689) TCGA-55-7907-01 5 178392082 178392082 A T ZNF454 Missense_Mutation p.H226L 0.35 tolerated(0.09) benign(0.243) TCGA-55-7907-01 5 19838916 19838916 G A CDH18 Silent p.F60F 0.34 TCGA-55-7907-01 5 21751939 21751939 G T CDH12 Missense_Mutation p.D764E 0.34 tolerated(0.16) benign(0.187) TCGA-55-7907-01 5 23526721 23526721 C A PRDM9 Missense_Mutation p.N508K 0.24 deleterious(0.04) benign(0.003) TCGA-55-7907-01 5 31317493 31317493 C A CDH6 Silent p.T508T 0.32 TCGA-55-7907-01 5 35876369 35876369 C A IL7R Silent p.S387S 0.11 TCGA-55-7907-01 5 35955804 35955804 T A UGT3A1 Missense_Mutation p.N413I 0.29 deleterious(0.04) possibly_damaging(0.516) TCGA-55-7907-01 5 39342283 39342283 T A C9 Silent p.L31L 0.23 TCGA-55-7907-01 5 39390546 39390546 C A DAB2 Missense_Mutation p.Q154H 0.21 deleterious(0) probably_damaging(0.995) TCGA-55-7907-01 5 42719572 42719572 T G GHR 3'UTR 0.30 TCGA-55-7907-01 5 42719573 42719573 G A GHR 3'UTR 0.28 TCGA-55-7907-01 5 54420663 54420663 G T CDC20B Missense_Mutation p.L395M 0.11 deleterious(0.01) benign(0.259) TCGA-55-7907-01 5 57755550 57755550 C T PLK2 Silent p.G79G 0.19 TCGA-55-7907-01 5 63256719 63256719 G T HTR1A Nonsense_Mutation p.C276* 0.18 TCGA-55-7907-01 5 6378601 6378601 T A MED10 5'UTR 0.25 TCGA-55-7907-01 5 70308510 70308510 G T NAIP Missense_Mutation p.P78Q 0.16 deleterious(0) probably_damaging(0.973) TCGA-55-7907-01 5 73153602 73153602 A T ARHGEF28 Nonsense_Mutation p.K638* 0.30 TCGA-55-7907-01 5 75427638 75427638 G T SV2C Missense_Mutation p.E21D 0.39 deleterious_low_confidence(0.02) possibly_damaging(0.58) TCGA-55-7907-01 5 7626284 7626284 T C ADCY2 Missense_Mutation p.L192P 0.15 deleterious(0) benign(0.355) TCGA-55-7907-01 5 81608634 81608634 G T ATP6AP1L Silent p.G112G 0.45 TCGA-55-7907-01 5 9629929 9629929 G T TAS2R1 Missense_Mutation p.F72L 0.24 tolerated(1) benign(0.003) TCGA-55-7907-01 6 101847126 101847126 G T GRIK2 5'UTR 0.25 TCGA-55-7907-01 6 10398806 10398806 G A TFAP2A Silent p.F386F 0.31 TCGA-55-7907-01 6 106553510 106553510 C G PRDM1 Missense_Mutation p.P492R 0.30 deleterious(0.01) benign(0.424) TCGA-55-7907-01 6 108985715 108985715 G T FOXO3 Missense_Mutation p.S560I 0.26 deleterious(0.01) benign(0.034) TCGA-55-7907-01 6 10984073 10984073 C T ELOVL2 Missense_Mutation p.G278S 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 6 110422792 110422792 T G WASF1 Missense_Mutation p.K507N 0.13 tolerated(0.24) probably_damaging(0.987) TCGA-55-7907-01 6 110734560 110734560 C A DDO Missense_Mutation p.D64Y 0.20 deleterious(0) probably_damaging(0.979) TCGA-55-7907-01 6 117237403 117237403 G T RFX6 Missense_Mutation p.D300Y 0.28 deleterious(0) possibly_damaging(0.75) TCGA-55-7907-01 6 119669822 119669822 C A MAN1A1 Nonsense_Mutation p.E137* 0.19 TCGA-55-7907-01 6 128134522 128134522 C G THEMIS Missense_Mutation p.E422Q 0.28 deleterious(0.02) possibly_damaging(0.86) TCGA-55-7907-01 6 128134779 128134779 G T THEMIS Missense_Mutation p.T336N 0.20 tolerated(0.49) benign(0.045) TCGA-55-7907-01 6 129573242 129573242 G T LAMA2 Missense_Mutation p.S633I 0.16 tolerated(0.32) benign(0.005) TCGA-55-7907-01 6 129618855 129618855 C A LAMA2 Missense_Mutation p.A961E 0.13 tolerated(0.06) benign(0.099) TCGA-55-7907-01 6 132695876 132695876 G A MOXD1 Missense_Mutation p.A102V 0.24 tolerated(0.31) benign(0.006) TCGA-55-7907-01 6 133136445 133136445 T C RPS12 Intron 0.28 TCGA-55-7907-01 6 134210578 134210578 G T TCF21 Missense_Mutation p.V15L 0.27 tolerated(0.31) benign(0) TCGA-55-7907-01 6 142732545 142732545 G A GPR126 Silent p.L846L 0.14 TCGA-55-7907-01 6 150001244 150001244 C A LATS1 Missense_Mutation p.G787V 0.22 deleterious(0) probably_damaging(1) TCGA-55-7907-01 6 150057682 150057682 C G NUP43 Missense_Mutation p.D239H 0.24 deleterious(0) probably_damaging(1) TCGA-55-7907-01 6 151672116 151672116 C A AKAP12 Missense_Mutation p.Q864K 0.15 tolerated(0.13) benign(0.113) TCGA-55-7907-01 6 155597019 155597019 T A CLDN20 Missense_Mutation p.W56R 0.34 deleterious(0) probably_damaging(0.988) TCGA-55-7907-01 6 158053870 158053870 A T ZDHHC14 Silent p.S236S 0.25 TCGA-55-7907-01 6 158053871 158053871 C T ZDHHC14 Nonsense_Mutation p.Q237* 0.25 TCGA-55-7907-01 6 158450011 158450011 G T SYNJ2 Silent p.T146T 0.16 TCGA-55-7907-01 6 160430102 160430102 G C IGF2R Missense_Mutation p.C117S 0.40 deleterious(0) possibly_damaging(0.828) TCGA-55-7907-01 6 161020604 161020604 C - LPA Frame_Shift_Del p.G1072Efs*10 0.16 TCGA-55-7907-01 6 161123315 161123315 G T PLG 5'UTR 0.14 TCGA-55-7907-01 6 161969912 161969912 C A PARK2 Nonsense_Mutation p.E353* 0.29 TCGA-55-7907-01 6 167416710 167416710 G C FGFR1OP Silent p.L62L 0.16 TCGA-55-7907-01 6 167416772 167416772 G C FGFR1OP Intron 0.19 TCGA-55-7907-01 6 167721356 167721356 C A UNC93A Missense_Mutation p.L356M 0.11 deleterious(0.03) probably_damaging(0.942) TCGA-55-7907-01 6 169067170 169067170 C G SMOC2 3'UTR 0.18 TCGA-55-7907-01 6 170871116 170871116 G A TBP Missense_Mutation p.A98T 0.29 tolerated_low_confidence(0.69) unknown(0) TCGA-55-7907-01 6 24445964 24445964 G C GPLD1 Missense_Mutation p.S639C 0.39 deleterious(0.02) possibly_damaging(0.897) TCGA-55-7907-01 6 24698141 24698141 G A ACOT13 Missense_Mutation p.V38M 0.12 deleterious(0.04) benign(0.328) TCGA-55-7907-01 6 26156882 26156882 G A HIST1H1E Silent p.V88V 0.06 TCGA-55-7907-01 6 26157278 26157278 G A HIST1H1E Silent p.%3D 0.19 TCGA-55-7907-01 6 26252107 26252107 G A HIST1H2BH Missense_Mutation p.E77K 0.29 deleterious_low_confidence(0.04) possibly_damaging(0.849) TCGA-55-7907-01 6 28541251 28541251 T A SCAND3 Missense_Mutation p.Q805H 0.24 deleterious_low_confidence(0.01) benign(0.28) TCGA-55-7907-01 6 29430378 29430378 G T OR2H1 Missense_Mutation p.V278L 0.28 tolerated(0.15) probably_damaging(0.999) TCGA-55-7907-01 6 29627401 29627401 C A MOG Missense_Mutation p.H132N 0.18 tolerated(1) probably_damaging(0.951) TCGA-55-7907-01 6 29640370 29640370 G - ZFP57 Frame_Shift_Del p.R507Gfs*10 0.20 TCGA-55-7907-01 6 30521208 30521208 G A GNL1 Missense_Mutation p.H243Y 0.30 tolerated(0.1) benign(0.112) TCGA-55-7907-01 6 31725979 31725979 G T MSH5 Missense_Mutation p.R351L 0.10 deleterious(0) probably_damaging(0.979) TCGA-55-7907-01 6 32178620 32178620 C A NOTCH4 Missense_Mutation p.S925I 0.41 deleterious(0) possibly_damaging(0.819) TCGA-55-7907-01 6 32190416 32190416 C A NOTCH4 Missense_Mutation p.G108V 0.29 deleterious(0) probably_damaging(1) TCGA-55-7907-01 6 32362549 32362549 C A BTNL2 Missense_Mutation p.E444D 0.15 deleterious(0.02) possibly_damaging(0.673) TCGA-55-7907-01 6 35477640 35477640 C G TULP1 Missense_Mutation p.G189R 0.33 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-55-7907-01 6 36938181 36938181 C A MTCH1 Splice_Site p.X324_splice 0.29 TCGA-55-7907-01 6 37467682 37467682 C A CCDC167 5'UTR 0.21 TCGA-55-7907-01 6 38771088 38771089 - T DNAH8 Splice_Site p.X795_splice 0.14 TCGA-55-7907-01 6 38813461 38813461 G T DNAH8 Nonsense_Mutation p.E1436* 0.32 TCGA-55-7907-01 6 38942254 38942254 C A DNAH8 Silent p.P4044P 0.33 TCGA-55-7907-01 6 39162477 39162477 G C KCNK5 Missense_Mutation p.L120V 0.28 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 6 39285716 39285716 A T KCNK16 Missense_Mutation p.L114Q 0.40 deleterious(0.01) probably_damaging(0.995) TCGA-55-7907-01 6 39682526 39682526 C A KIF6 Missense_Mutation p.D65Y 0.21 deleterious(0) probably_damaging(0.992) TCGA-55-7907-01 6 397159 397159 G T IRF4 Missense_Mutation p.V182F 0.16 tolerated(0.41) benign(0.178) TCGA-55-7907-01 6 398857 398857 T C IRF4 Missense_Mutation p.C223R 0.25 tolerated(0.16) possibly_damaging(0.762) TCGA-55-7907-01 6 41001699 41001699 C T UNC5CL Missense_Mutation p.A203T 0.32 tolerated(0.65) benign(0.003) TCGA-55-7907-01 6 41060812 41060812 A G NFYA Silent p.P292P 0.17 TCGA-55-7907-01 6 41704680 41704680 G T PGC Silent p.P359P 0.45 TCGA-55-7907-01 6 41710072 41710072 C G PGC Missense_Mutation p.Q201H 0.25 deleterious(0.01) possibly_damaging(0.669) TCGA-55-7907-01 6 42225893 42225893 C G TRERF1 Missense_Mutation p.E772D 0.18 tolerated(0.22) benign(0.217) TCGA-55-7907-01 6 42541585 42541585 G T UBR2 Silent p.L64L 0.31 TCGA-55-7907-01 6 42541586 42541586 G T UBR2 Missense_Mutation p.A65S 0.33 deleterious(0.04) benign(0.005) TCGA-55-7907-01 6 44219848 44219848 C T HSP90AB1 Silent p.L525L 0.13 TCGA-55-7907-01 6 44249877 44249877 G T TCTE1 Missense_Mutation p.S422R 0.32 tolerated(0.08) benign(0.168) TCGA-55-7907-01 6 44344903 44344903 T C SPATS1 3'UTR 0.40 TCGA-55-7907-01 6 44988328 44988328 C A SUPT3H Missense_Mutation p.R87S 0.27 tolerated(0.12) possibly_damaging(0.687) TCGA-55-7907-01 6 46995498 46995498 C G GPR110 Splice_Site p.X24_splice 0.17 TCGA-55-7907-01 6 49660511 49660511 C A CRISP2 Missense_Mutation p.C236F 0.16 deleterious(0) probably_damaging(1) TCGA-55-7907-01 6 49701533 49701533 C T CRISP3 Missense_Mutation p.M125I 0.28 deleterious(0) benign(0.159) TCGA-55-7907-01 6 49754589 49754589 C A PGK2 Silent p.V104V 0.26 TCGA-55-7907-01 6 49754737 49754737 G T PGK2 Missense_Mutation p.A55D 0.32 deleterious(0) probably_damaging(0.997) TCGA-55-7907-01 6 49815968 49815968 C A CRISP1 Missense_Mutation p.K80N 0.22 tolerated(0.71) benign(0.015) TCGA-55-7907-01 6 51875134 51875134 T A PKHD1 Silent p.I1908I 0.31 TCGA-55-7907-01 6 56510775 56510775 C A DST 5'Flank 0.27 TCGA-55-7907-01 6 6266977 6266977 C A F13A1 Nonsense_Mutation p.G129* 0.17 TCGA-55-7907-01 6 66205301 66205301 C G EYS Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0) benign(0) TCGA-55-7907-01 6 69640461 69640461 G A BAI3 Missense_Mutation p.M256I 0.36 tolerated(0.45) benign(0.009) TCGA-55-7907-01 6 70851915 70851915 G T COL19A1 Missense_Mutation p.G507C 0.37 deleterious(0) probably_damaging(1) TCGA-55-7907-01 6 71246009 71246009 A T FAM135A Missense_Mutation p.T1338S 0.08 deleterious(0.05) probably_damaging(0.976) TCGA-55-7907-01 6 7327020 7327020 C A CAGE1 3'UTR 0.20 TCGA-55-7907-01 6 74331599 74331599 G T SLC17A5 Missense_Mutation p.N302K 0.21 deleterious(0.02) probably_damaging(0.994) TCGA-55-7907-01 6 7570791 7570791 G T DSP Missense_Mutation p.A566S 0.24 probably_damaging(0.975) TCGA-55-7907-01 6 80634726 80634726 C A ELOVL4 Silent p.A104A 0.35 TCGA-55-7907-01 6 87725103 87725103 G A HTR1E Silent p.K17K 0.24 TCGA-55-7907-01 6 97247545 97247545 C A GPR63 Silent p.V21V 0.12 TCGA-55-7907-01 7 100552236 100552236 C T MUC3A Silent p.T329T 0.12 TCGA-55-7907-01 7 100817860 100817860 G T NAT16 Missense_Mutation p.L77M 0.27 deleterious(0.01) benign(0.225) TCGA-55-7907-01 7 101176381 101176381 G T COL26A1 Missense_Mutation p.R135L 0.42 deleterious(0.01) possibly_damaging(0.52) TCGA-55-7907-01 7 103131117 103131117 A G RELN Silent p.S3201S 0.32 TCGA-55-7907-01 7 103243856 103243856 C G RELN Missense_Mutation p.Q1076H 0.30 tolerated(0.12) benign(0.367) TCGA-55-7907-01 7 104746303 104746303 C A KMT2E Intron 0.16 TCGA-55-7907-01 7 107114493 107114493 C A GPR22 5'UTR 0.30 TCGA-55-7907-01 7 107115596 107115596 C A GPR22 Missense_Mutation p.P364H 0.25 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 7 112423920 112423920 T A TMEM168 Missense_Mutation p.T321S 0.29 tolerated(0.67) benign(0.028) TCGA-55-7907-01 7 112723809 112723809 G T GPR85 Missense_Mutation p.A323D 0.39 deleterious(0.02) possibly_damaging(0.752) TCGA-55-7907-01 7 116552135 116552135 G T CAPZA2 Nonsense_Mutation p.E200* 0.29 TCGA-55-7907-01 7 116552136 116552136 A T CAPZA2 Missense_Mutation p.E200V 0.29 deleterious(0) probably_damaging(0.994) TCGA-55-7907-01 7 117170968 117170968 G T CFTR Missense_Mutation p.V97L 0.28 deleterious(0) benign(0.008) TCGA-55-7907-01 7 120655843 120655843 C A CPED1 Missense_Mutation p.T125K 0.30 tolerated(0.35) benign(0.07) TCGA-55-7907-01 7 121650906 121650906 C A PTPRZ1 Missense_Mutation p.N602K 0.16 tolerated_low_confidence(0.06) benign(0.006) TCGA-55-7907-01 7 121652129 121652129 C A PTPRZ1 Missense_Mutation p.T1010K 0.16 tolerated_low_confidence(0.09) benign(0.193) TCGA-55-7907-01 7 123092812 123092812 C A IQUB Missense_Mutation p.Q787H 0.33 tolerated_low_confidence(0.18) benign(0.002) TCGA-55-7907-01 7 123101660 123101660 C A IQUB Splice_Site p.X587_splice 0.50 TCGA-55-7907-01 7 129938612 129938612 G A CPA4 Missense_Mutation p.R32K 0.27 tolerated(0.68) benign(0.007) TCGA-55-7907-01 7 133868525 133868525 A T LRGUK Silent p.I418I 0.28 TCGA-55-7907-01 7 134870860 134870860 C A WDR91 3'UTR 0.15 TCGA-55-7907-01 7 136700111 136700111 G T CHRM2 Missense_Mutation p.G167W 0.30 deleterious(0) probably_damaging(1) TCGA-55-7907-01 7 136700860 136700860 C A CHRM2 Nonsense_Mutation p.C416* 0.34 TCGA-55-7907-01 7 137150701 137150701 C T DGKI Silent p.A863A 0.21 TCGA-55-7907-01 7 138264263 138264263 G C TRIM24 Missense_Mutation p.L857F 0.31 deleterious(0) probably_damaging(0.996) TCGA-55-7907-01 7 138305866 138305866 C A SVOPL Silent p.T426T 0.18 TCGA-55-7907-01 7 138713461 138713461 C T ZC3HAV1L Missense_Mutation p.M249I 0.16 tolerated(0.17) benign(0.112) TCGA-55-7907-01 7 139655362 139655362 G A TBXAS1 Missense_Mutation p.R262H 0.20 tolerated(0.07) possibly_damaging(0.9) TCGA-55-7907-01 7 140221738 140221738 C T DENND2A Missense_Mutation p.R943H 0.14 deleterious(0) probably_damaging(0.997) TCGA-55-7907-01 7 140285455 140285455 C A DENND2A Silent p.L393L 0.25 TCGA-55-7907-01 7 141619410 141619410 C A OR9A4 Missense_Mutation p.F245L 0.25 tolerated(0.8) benign(0.168) TCGA-55-7907-01 7 141719069 141719069 C T MGAM Missense_Mutation p.S133F 0.32 deleterious(0) possibly_damaging(0.741) TCGA-55-7907-01 7 141766483 141766483 C A MGAM Intron 0.21 TCGA-55-7907-01 7 142104202 142104202 G T TRBV6-9 Nonsense_Mutation p.S88* 0.30 TCGA-55-7907-01 7 142428868 142428868 A T TRBV28 Missense_Mutation p.K76N 0.09 tolerated(0.08) benign(0.061) TCGA-55-7907-01 7 142561857 142561857 C A EPHB6 Missense_Mutation p.A100D 0.27 deleterious(0) probably_damaging(1) TCGA-55-7907-01 7 142574532 142574532 G A TRPV6 Silent p.L182L 0.44 TCGA-55-7907-01 7 142724168 142724168 C A OR9A2 Missense_Mutation p.G18W 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-55-7907-01 7 143417194 143417194 C A FAM115C Missense_Mutation p.Q348K 0.18 tolerated(0.25) benign(0.153) TCGA-55-7907-01 7 143701462 143701462 G T OR6B1 Missense_Mutation p.A125S 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-55-7907-01 7 14378244 14378244 C A DGKB Missense_Mutation p.W674L 0.26 deleterious(0) probably_damaging(1) TCGA-55-7907-01 7 143807247 143807247 C T OR2A2 Missense_Mutation p.T191I 0.30 tolerated(0.12) possibly_damaging(0.492) TCGA-55-7907-01 7 144098216 144098216 T C NOBOX Missense_Mutation p.Q256R 0.36 deleterious(0.03) benign(0.22) TCGA-55-7907-01 7 146471378 146471378 C A CNTNAP2 Missense_Mutation p.P38Q 0.23 tolerated(0.06) benign(0.004) TCGA-55-7907-01 7 147259301 147259301 G C CNTNAP2 Missense_Mutation p.D617H 0.25 deleterious(0) probably_damaging(0.998) TCGA-55-7907-01 7 148768605 148768605 C A ZNF786 Missense_Mutation p.G420V 0.30 deleterious(0.03) possibly_damaging(0.776) TCGA-55-7907-01 7 149427646 149427646 G T KRBA1 Missense_Mutation p.G711C 0.33 tolerated(0.11) possibly_damaging(0.686) TCGA-55-7907-01 7 149477097 149477097 G T SSPO RNA 0.21 TCGA-55-7907-01 7 150417431 150417431 C A GIMAP1 Missense_Mutation p.H113Q 0.26 deleterious(0) probably_damaging(0.998) TCGA-55-7907-01 7 150707685 150707685 G T NOS3 Missense_Mutation p.D896Y 0.33 deleterious(0) probably_damaging(0.997) TCGA-55-7907-01 7 151860040 151860040 C A KMT2C Missense_Mutation p.G3541V 0.34 possibly_damaging(0.847) TCGA-55-7907-01 7 152345743 152345743 C G XRCC2 Missense_Mutation p.G276A 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 7 154863225 154863225 G T HTR5A Missense_Mutation p.V206L 0.27 tolerated(0.57) benign(0.062) TCGA-55-7907-01 7 15599801 15599801 C T AGMO Silent p.T74T 0.18 TCGA-55-7907-01 7 158534284 158534284 T A ESYT2 Missense_Mutation p.S727C 0.39 deleterious(0.02) probably_damaging(0.992) TCGA-55-7907-01 7 18801852 18801852 G T HDAC9 Missense_Mutation p.G706C 0.23 deleterious(0) probably_damaging(0.994) TCGA-55-7907-01 7 20698288 20698288 G C ABCB5 Missense_Mutation p.A566P 0.29 deleterious(0) probably_damaging(0.987) TCGA-55-7907-01 7 26400640 26400640 G T SNX10 Missense_Mutation p.D24Y 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-55-7907-01 7 27237955 27237955 C A HOXA13 Silent p.T343T 0.27 TCGA-55-7907-01 7 28610146 28610146 G T CREB5 Missense_Mutation p.R152L 0.17 deleterious(0.04) benign(0.143) TCGA-55-7907-01 7 32598191 32598191 A T AVL9 Silent p.P210P 0.20 TCGA-55-7907-01 7 33136953 33136953 C A RP9 Missense_Mutation p.G112V 0.30 deleterious(0) probably_damaging(0.988) TCGA-55-7907-01 7 36552820 36552820 C A AOAH 3'UTR 0.30 TCGA-55-7907-01 7 39379522 39379522 C A POU6F2 Missense_Mutation p.P265T 0.27 deleterious_low_confidence(0.04) unknown(0) TCGA-55-7907-01 7 41729164 41729164 A T INHBA 3'UTR 0.43 TCGA-55-7907-01 7 41729792 41729792 T A INHBA Missense_Mutation p.Q246L 0.23 tolerated(0.37) benign(0.013) TCGA-55-7907-01 7 42005524 42005524 G C GLI3 Nonsense_Mutation p.Y1049* 0.14 TCGA-55-7907-01 7 4281481 4281481 G T SDK1 Missense_Mutation p.A2063S 0.23 deleterious(0.03) benign(0.132) TCGA-55-7907-01 7 43477686 43477686 C A HECW1 Missense_Mutation p.R296S 0.24 deleterious(0) probably_damaging(1) TCGA-55-7907-01 7 43484345 43484345 G T HECW1 Missense_Mutation p.R525L 0.33 deleterious_low_confidence(0.05) benign(0.22) TCGA-55-7907-01 7 43906464 43906464 C A MRPS24 Missense_Mutation p.R113L 0.10 deleterious(0) possibly_damaging(0.893) TCGA-55-7907-01 7 43917515 43917515 C G URGCP Missense_Mutation p.W516S 0.28 tolerated(0.44) benign(0.234) TCGA-55-7907-01 7 45007525 45007525 C G MYO1G Missense_Mutation p.R536T 0.28 deleterious(0.01) benign(0.026) TCGA-55-7907-01 7 4841357 4841357 G A RADIL Silent p.G923G 0.43 TCGA-55-7907-01 7 4899793 4899793 C A PAPOLB Missense_Mutation p.S549I 0.17 tolerated(0.11) benign(0.058) TCGA-55-7907-01 7 55874857 55874857 G T SEPT14 Missense_Mutation p.H304Q 0.21 deleterious(0.02) probably_damaging(0.939) TCGA-55-7907-01 7 6189538 6189538 A T USP42 Missense_Mutation p.T571S 0.15 tolerated(0.2) benign(0.049) TCGA-55-7907-01 7 70880961 70880961 C A WBSCR17 Missense_Mutation p.L226M 0.32 deleterious(0) probably_damaging(0.998) TCGA-55-7907-01 7 72988399 72988399 C A TBL2 Silent p.L105L 0.18 TCGA-55-7907-01 7 73634097 73634097 C A LAT2 Missense_Mutation p.T53K 0.25 tolerated(0.06) benign(0.228) TCGA-55-7907-01 7 75608896 75608896 T A POR Missense_Mutation p.L122Q 0.27 deleterious(0) possibly_damaging(0.86) TCGA-55-7907-01 7 77762304 77762304 C A MAGI2 Missense_Mutation p.Q1035H 0.31 deleterious(0.01) probably_damaging(0.969) TCGA-55-7907-01 7 87022321 87022321 G - CROT Frame_Shift_Del p.G581Efs*3 0.18 TCGA-55-7907-01 7 87160718 87160718 C T ABCB1 Silent p.L859L 0.22 TCGA-55-7907-01 7 87407136 87407136 G C RUNDC3B Missense_Mutation p.R291P 0.35 deleterious(0) probably_damaging(0.922) TCGA-55-7907-01 7 88847495 88847495 A T ZNF804B Silent p.A45A 0.29 TCGA-55-7907-01 7 88963101 88963101 G C ZNF804B Missense_Mutation p.A269P 0.46 tolerated(0.15) probably_damaging(0.921) TCGA-55-7907-01 7 92887685 92887685 G C CCDC132 Missense_Mutation p.R186P 0.24 deleterious(0) probably_damaging(0.996) TCGA-55-7907-01 7 95775939 95775939 C G SLC25A13 Missense_Mutation p.E462Q 0.33 deleterious(0) possibly_damaging(0.832) TCGA-55-7907-01 7 97365608 97365608 C A TAC1 Intron 0.27 TCGA-55-7907-01 7 97365653 97365653 C G TAC1 Missense_Mutation p.A111G 0.26 deleterious(0.04) benign(0.297) TCGA-55-7907-01 7 97617759 97617759 G A OCM2 Nonsense_Mutation p.Q55* 0.35 TCGA-55-7907-01 7 97619394 97619394 C A OCM2 Missense_Mutation p.S8I 0.30 deleterious(0.01) probably_damaging(0.995) TCGA-55-7907-01 7 98564667 98564667 C T TRRAP Missense_Mutation p.P2387S 0.22 possibly_damaging(0.881) TCGA-55-7907-01 7 98591355 98591355 G A TRRAP Missense_Mutation p.E3334K 0.27 probably_damaging(0.999) TCGA-55-7907-01 7 98633176 98633176 G C SMURF1 Missense_Mutation p.S684C 0.36 deleterious(0) probably_damaging(0.983) TCGA-55-7907-01 7 99047933 99047933 C T CPSF4 Silent p.H114H 0.32 TCGA-55-7907-01 7 99695832 99695832 C T MCM7 Missense_Mutation p.G268R 0.21 deleterious(0) probably_damaging(0.998) TCGA-55-7907-01 8 10466404 10466404 C A RP1L1 Missense_Mutation p.S1735I 0.26 unknown(0) TCGA-55-7907-01 8 10469309 10469309 C A RP1L1 Missense_Mutation p.G767W 0.32 probably_damaging(0.961) TCGA-55-7907-01 8 10469310 10469310 C A RP1L1 Silent p.A766A 0.33 TCGA-55-7907-01 8 104831656 104831656 T A RIMS2 Intron 0.69 TCGA-55-7907-01 8 10555264 10555264 C A C8orf74 Missense_Mutation p.Q133K 0.27 tolerated(0.1) benign(0.384) TCGA-55-7907-01 8 10583411 10583411 T C SOX7 Missense_Mutation p.Y387C 0.26 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 8 106815464 106815464 G A ZFPM2 Missense_Mutation p.E1052K 0.11 deleterious_low_confidence(0.02) benign(0.092) TCGA-55-7907-01 8 110308681 110308681 C T NUDCD1 Missense_Mutation p.D131N 0.21 deleterious(0) possibly_damaging(0.872) TCGA-55-7907-01 8 110466949 110466949 C T PKHD1L1 Intron 0.48 TCGA-55-7907-01 8 113402892 113402892 C A CSMD3 Splice_Site p.X1978_splice 0.10 TCGA-55-7907-01 8 113697734 113697737 CAGC AAG CSMD3 Frame_Shift_Del p.A794Lfs*59 0.12 TCGA-55-7907-01 8 113966912 113966912 C T CSMD3 Splice_Site p.X474_splice 0.59 TCGA-55-7907-01 8 116631712 116631712 C A TRPS1 Missense_Mutation p.D205Y 0.52 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-7907-01 8 121224795 121224795 G A COL14A1 Missense_Mutation p.V526I 0.19 tolerated(0.65) benign(0.129) TCGA-55-7907-01 8 124162330 124162330 A T TBC1D31 Missense_Mutation p.Q1010L 0.46 tolerated(0.81) benign(0) TCGA-55-7907-01 8 124195292 124195292 G T FAM83A Missense_Mutation p.V66L 0.43 tolerated(0.58) benign(0.026) TCGA-55-7907-01 8 124748097 124748097 T A ANXA13 Silent p.S12S 0.53 TCGA-55-7907-01 8 125603473 125603473 C A MTSS1 Missense_Mutation p.G71V 0.12 deleterious(0) probably_damaging(0.981) TCGA-55-7907-01 8 130762748 130762748 G T GSDMC Missense_Mutation p.Q338K 0.53 tolerated(0.05) probably_damaging(0.958) TCGA-55-7907-01 8 133014952 133014952 A C EFR3A Missense_Mutation p.K770T 0.54 deleterious(0.01) possibly_damaging(0.549) TCGA-55-7907-01 8 133015496 133015496 A T EFR3A Missense_Mutation p.H775L 0.16 deleterious(0.01) benign(0.408) TCGA-55-7907-01 8 139380195 139380195 G T FAM135B Nonsense_Mutation p.S11* 0.41 TCGA-55-7907-01 8 139620186 139620186 C A COL22A1 Missense_Mutation p.G1342V 0.21 unknown(0) TCGA-55-7907-01 8 139767420 139767420 G T COL22A1 Missense_Mutation p.P671T 0.25 unknown(0) TCGA-55-7907-01 8 143955804 143955804 G A CYP11B1 Silent p.F499F 0.42 TCGA-55-7907-01 8 144464036 144464036 G T RHPN1 Missense_Mutation p.W565C 0.47 deleterious(0) probably_damaging(1) TCGA-55-7907-01 8 144811213 144811213 C A FAM83H Missense_Mutation p.G221W 0.44 deleterious(0) probably_damaging(1) TCGA-55-7907-01 8 144941191 144941191 G C EPPK1 Missense_Mutation p.D2077E 0.09 benign(0) TCGA-55-7907-01 8 144991003 144991003 C A PLEC Missense_Mutation p.R4466L 0.43 probably_damaging(0.962) TCGA-55-7907-01 8 145579728 145579728 C G FBXL6 Missense_Mutation p.E458Q 0.19 deleterious(0) possibly_damaging(0.776) TCGA-55-7907-01 8 1496869 1496869 C A DLGAP2 Missense_Mutation p.L4I 0.29 deleterious(0) probably_damaging(0.997) TCGA-55-7907-01 8 1497625 1497625 G A DLGAP2 Missense_Mutation p.G256R 0.17 tolerated(0.53) probably_damaging(0.997) TCGA-55-7907-01 8 21768283 21768283 C A DOK2 Silent p.R173R 0.29 TCGA-55-7907-01 8 22035416 22035416 G C BMP1 Missense_Mutation p.G261A 0.18 deleterious(0) possibly_damaging(0.904) TCGA-55-7907-01 8 22035417 22035417 G T BMP1 Silent p.G261G 0.18 TCGA-55-7907-01 8 22138988 22138988 G T PIWIL2 Missense_Mutation p.G129W 0.20 deleterious_low_confidence(0) benign(0.001) TCGA-55-7907-01 8 28321313 28321313 T C FBXO16 Missense_Mutation p.Q53R 0.33 deleterious(0) probably_damaging(0.973) TCGA-55-7907-01 8 2944787 2944787 G T CSMD1 Missense_Mutation p.H2436N 0.23 benign(0.001) TCGA-55-7907-01 8 30567405 30567405 T A GSR Silent p.T116T 0.25 TCGA-55-7907-01 8 30705252 30705252 C T TEX15 Missense_Mutation p.E428K 0.15 tolerated(0.08) benign(0.066) TCGA-55-7907-01 8 32617782 32617782 G A NRG1 Missense_Mutation p.V381I 0.27 tolerated(0.09) benign(0.019) TCGA-55-7907-01 8 33416289 33416289 C A RNF122 Missense_Mutation p.G9V 0.20 deleterious_low_confidence(0.01) benign(0.371) TCGA-55-7907-01 8 36793066 36793066 G A KCNU1 Silent p.K1026K 0.35 TCGA-55-7907-01 8 37687411 37687411 C T GPR124 Silent p.R199R 0.26 TCGA-55-7907-01 8 41530083 41530083 C A ANK1 Missense_Mutation p.D1670Y 0.26 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-55-7907-01 8 41580669 41580669 C A ANK1 Missense_Mutation p.G328W 0.24 deleterious(0) probably_damaging(1) TCGA-55-7907-01 8 42146232 42146232 C T IKBKB Silent p.I62I 0.33 TCGA-55-7907-01 8 48689479 48689479 T A PRKDC Missense_Mutation p.K4035N 0.44 benign(0.015) TCGA-55-7907-01 8 51617258 51617258 C T SNTG1 Silent p.A379A 0.53 TCGA-55-7907-01 8 51705290 51705290 C A SNTG1 Silent p.A485A 0.11 TCGA-55-7907-01 8 51705359 51705359 T A SNTG1 Silent p.A508A 0.49 TCGA-55-7907-01 8 52232491 52232491 C G PXDNL Missense_Mutation p.R1451T 0.35 tolerated_low_confidence(0.59) benign(0.008) TCGA-55-7907-01 8 52366197 52366197 C A PXDNL Silent p.V377V 0.26 TCGA-55-7907-01 8 52366326 52366326 G T PXDNL Silent p.I334I 0.14 TCGA-55-7907-01 8 56436132 56436132 C A XKR4 Missense_Mutation p.F433L 0.53 deleterious(0) probably_damaging(0.982) TCGA-55-7907-01 8 57876397 57876397 G C IMPAD1 Silent p.A345A 0.28 TCGA-55-7907-01 8 57878817 57878817 C G IMPAD1 Silent p.G247G 0.21 TCGA-55-7907-01 8 69011923 69011923 G T PREX2 Nonsense_Mutation p.E854* 0.25 TCGA-55-7907-01 8 71593456 71593456 G T XKR9 Missense_Mutation p.A55S 0.14 deleterious(0.01) benign(0.049) TCGA-55-7907-01 8 72983985 72983985 C A TRPA1 Nonsense_Mutation p.E77* 0.51 TCGA-55-7907-01 8 7308656 7308656 T A SPAG11B Intron 0.12 TCGA-55-7907-01 8 75898471 75898471 G A CRISPLD1 Missense_Mutation p.M83I 0.13 deleterious(0) probably_damaging(0.976) TCGA-55-7907-01 8 77766314 77766314 G C ZFHX4 Missense_Mutation p.G2386A 0.30 probably_damaging(0.994) TCGA-55-7907-01 8 8234233 8234233 C T SGK223 Silent p.G562G 0.24 TCGA-55-7907-01 8 87163695 87163695 G A ATP6V0D2 Missense_Mutation p.V273I 0.43 deleterious(0.04) benign(0.063) TCGA-55-7907-01 8 87666257 87666257 T G CNGB3 Missense_Mutation p.T296P 0.47 deleterious(0.04) benign(0.116) TCGA-55-7907-01 8 87679267 87679267 G C CNGB3 Silent p.T246T 0.44 TCGA-55-7907-01 8 89128842 89128842 G C MMP16 Missense_Mutation p.P326R 0.51 tolerated(0.14) possibly_damaging(0.86) TCGA-55-7907-01 8 89128843 89128843 G T MMP16 Missense_Mutation p.P326T 0.51 deleterious(0.04) probably_damaging(0.921) TCGA-55-7907-01 8 95750606 95750606 C T DPY19L4 Missense_Mutation p.R88W 0.22 deleterious(0) probably_damaging(0.996) TCGA-55-7907-01 8 99102061 99102061 C A C8orf47 Missense_Mutation p.D272E 0.12 tolerated(0.34) benign(0.007) TCGA-55-7907-01 9 100667197 100667197 C T C9orf156 Missense_Mutation p.D382N 0.31 deleterious(0) probably_damaging(1) TCGA-55-7907-01 9 101800987 101800987 C A COL15A1 Nonsense_Mutation p.S816* 0.38 TCGA-55-7907-01 9 105767107 105767107 C A CYLC2 Missense_Mutation p.T104N 0.21 tolerated(0.52) possibly_damaging(0.61) TCGA-55-7907-01 9 107267456 107267456 C G OR13F1 Missense_Mutation p.L305V 0.34 tolerated(0.27) benign(0.079) TCGA-55-7907-01 9 107332233 107332233 C A OR13C8 Missense_Mutation p.P262H 0.32 deleterious(0.01) probably_damaging(1) TCGA-55-7907-01 9 112018505 112018505 C T EPB41L4B Splice_Site p.X281_splice 0.42 TCGA-55-7907-01 9 124534959 124534959 G T DAB2IP Missense_Mutation p.G690W 0.38 tolerated(0.18) probably_damaging(0.993) TCGA-55-7907-01 9 124976561 124976561 C A LHX6 Splice_Site p.X261_splice 0.32 TCGA-55-7907-01 9 126125314 126125314 C A CRB2 Missense_Mutation p.P89T 0.24 deleterious(0.02) unknown(0) TCGA-55-7907-01 9 126125366 126125366 A C CRB2 Missense_Mutation p.E106A 0.57 deleterious(0) unknown(0) TCGA-55-7907-01 9 130207408 130207408 G T ZNF79 Nonsense_Mutation p.E477* 0.32 TCGA-55-7907-01 9 133799139 133799139 C A FIBCD1 Missense_Mutation p.G281C 0.57 deleterious(0) probably_damaging(1) TCGA-55-7907-01 9 136595228 136595228 G A SARDH Nonsense_Mutation p.Q258* 0.34 TCGA-55-7907-01 9 14307439 14307439 T A NFIB Silent p.R37R 0.59 TCGA-55-7907-01 9 18889718 18889718 G T ADAMTSL1 Missense_Mutation p.A1539S 0.33 tolerated(0.5) benign(0.028) TCGA-55-7907-01 9 20414338 20414338 C A MLLT3 Missense_Mutation p.S169I 0.29 tolerated(0.08) benign(0.029) TCGA-55-7907-01 9 20740332 20740332 A C FOCAD Missense_Mutation p.T129P 0.43 tolerated(0.19) possibly_damaging(0.588) TCGA-55-7907-01 9 2834129 2834129 T C KIAA0020 Silent p.K114K 0.57 TCGA-55-7907-01 9 35044853 35044853 C A C9orf131 Missense_Mutation p.R743S 0.46 tolerated(0.14) benign(0.002) TCGA-55-7907-01 9 35748807 35748807 C G GBA2 5'UTR 0.57 TCGA-55-7907-01 9 5231714 5231714 C A INSL4 Missense_Mutation p.P64H 0.41 tolerated(0.13) possibly_damaging(0.516) TCGA-55-7907-01 9 70177786 70177786 C A FOXD4L5 Silent p.G66G 0.24 TCGA-55-7907-01 9 77354770 77354770 C A TRPM6 Missense_Mutation p.V1786F 0.29 deleterious(0.01) possibly_damaging(0.806) TCGA-55-7907-01 9 77745523 77745523 C T OSTF1 Silent p.S54S 0.39 TCGA-55-7907-01 9 84608662 84608662 C T SPATA31D1 Missense_Mutation p.P1093S 0.26 tolerated(0.77) benign(0.003) TCGA-55-7907-01 9 88938432 88938432 C A ZCCHC6 Nonsense_Mutation p.E745* 0.48 TCGA-55-7907-01 9 90255720 90255720 G C DAPK1 Missense_Mutation p.K262N 0.38 deleterious(0) benign(0.337) TCGA-55-7907-01 9 95599155 95599155 C A ANKRD19P RNA 0.35 TCGA-55-7907-01 9 990869 990869 G T DMRT3 Missense_Mutation p.R428L 0.40 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-55-7907-01 X 100178007 100178007 C G XKRX Missense_Mutation p.E127Q 0.42 tolerated(0.37) benign(0.136) TCGA-55-7907-01 X 100615557 100615557 C A BTK Missense_Mutation p.G259W 0.50 deleterious(0) probably_damaging(0.999) TCGA-55-7907-01 X 101820679 101820679 A T NXF4 RNA 0.24 TCGA-55-7907-01 X 103349077 103349077 C A SLC25A53 Silent p.T288T 0.22 TCGA-55-7907-01 X 105280605 105280605 C G SERPINA7 Missense_Mutation p.D149H 0.35 deleterious(0.03) possibly_damaging(0.897) TCGA-55-7907-01 X 110970074 110970074 G T ALG13 Missense_Mutation p.M589I 0.36 tolerated(0.16) benign(0.008) TCGA-55-7907-01 X 111195569 111195569 G C TRPC5 Missense_Mutation p.T27R 0.43 tolerated(0.4) benign(0.002) TCGA-55-7907-01 X 114141351 114141351 C A HTR2C Missense_Mutation p.H250Q 0.48 tolerated(0.44) benign(0) TCGA-55-7907-01 X 117786007 117786007 C T DOCK11 Silent p.I1554I 0.29 TCGA-55-7907-01 X 11790778 11790778 G T MSL3 Nonsense_Mutation p.E474* 0.47 TCGA-55-7907-01 X 120009174 120009174 C A CT47B1 Silent p.A117A 0.69 TCGA-55-7907-01 X 125298782 125298782 C A DCAF12L2 Missense_Mutation p.D376Y 0.32 deleterious(0) probably_damaging(1) TCGA-55-7907-01 X 129173179 129173179 G T BCORL1 Missense_Mutation p.D1514Y 0.41 probably_damaging(1) TCGA-55-7907-01 X 129354419 129354419 T G ZNF280C Silent p.L477L 0.33 TCGA-55-7907-01 X 14622519 14622519 T A GLRA2 Missense_Mutation p.F193I 0.64 deleterious(0) benign(0.159) TCGA-55-7907-01 X 148037342 148037342 C A AFF2 Silent p.L589L 0.48 TCGA-55-7907-01 X 151283837 151283837 G A RP11-1007I13.4 RNA 0.70 TCGA-55-7907-01 X 153170500 153170500 C G AVPR2 5'UTR 0.62 TCGA-55-7907-01 X 153205581 153205581 G T RENBP Missense_Mutation p.Q351K 0.54 tolerated(0.15) benign(0.034) TCGA-55-7907-01 X 22291500 22291500 A T ZNF645 Missense_Mutation p.Q131L 0.48 deleterious(0) benign(0.034) TCGA-55-7907-01 X 26212975 26212975 C A MAGEB6 Missense_Mutation p.Q338K 0.45 tolerated(0.13) probably_damaging(0.959) TCGA-55-7907-01 X 3239345 3239345 C G MXRA5 Missense_Mutation p.D1461H 0.60 tolerated(0.07) benign(0.001) TCGA-55-7907-01 X 34147994 34147994 C A FAM47A 3'UTR 0.74 TCGA-55-7907-01 X 34148498 34148498 G T FAM47A Missense_Mutation p.P633H 0.50 tolerated(0.54) probably_damaging(0.937) TCGA-55-7907-01 X 37965997 37965997 G T SYTL5 Missense_Mutation p.G458V 0.35 deleterious(0.04) benign(0.364) TCGA-55-7907-01 X 47775276 47775276 G T ZNF81 Nonsense_Mutation p.E411* 0.55 TCGA-55-7907-01 X 47775277 47775277 A G ZNF81 Missense_Mutation p.E411G 0.57 tolerated(0.06) probably_damaging(0.999) TCGA-55-7907-01 X 50094343 50094343 A T CCNB3 Missense_Mutation p.K1355M 0.53 deleterious(0) probably_damaging(0.996) TCGA-55-7907-01 X 50377003 50377003 C T SHROOM4 Silent p.R690R 0.46 TCGA-55-7907-01 X 53439185 53439185 C T SMC1A Silent p.L291L 0.35 TCGA-55-7907-01 X 63444721 63444721 C T ASB12 Silent p.L270L 0.55 TCGA-55-7907-01 X 64709138 64709138 G A ZC3H12B Missense_Mutation p.D153N 0.51 deleterious(0.02) benign(0.103) TCGA-55-7907-01 X 70148374 70148374 G T SLC7A3 Missense_Mutation p.D213E 0.75 deleterious(0.04) benign(0.188) TCGA-55-7907-01 X 70343028 70343028 G T MED12 Missense_Mutation p.M523I 0.64 benign(0.028) TCGA-55-7907-01 X 70345907 70345907 G T MED12 Missense_Mutation p.R815L 0.54 benign(0.044) TCGA-55-7907-01 X 73062796 73062796 G C XIST RNA 0.52 TCGA-55-7907-01 X 77528533 77528533 G A CYSLTR1 Silent p.V237V 0.59 TCGA-55-7907-01 X 86067905 86067905 G A DACH2 Silent p.K429K 0.75 TCGA-55-7907-01 X 99955908 99955908 C A SYTL4 Missense_Mutation p.R175L 0.45 tolerated(0.31) benign(0.038) TCGA-55-7910-01 10 100995547 100995547 A T HPSE2 Missense_Mutation p.C5S 0.33 deleterious_low_confidence(0) benign(0.001) TCGA-55-7910-01 10 104404540 104404540 A T TRIM8 Missense_Mutation p.N56Y 0.46 tolerated(0.16) probably_damaging(0.997) TCGA-55-7910-01 10 105797511 105797511 G C COL17A1 Missense_Mutation p.L1031V 0.22 possibly_damaging(0.855) TCGA-55-7910-01 10 105906085 105906085 C T WDR96 Missense_Mutation p.R1264Q 0.28 tolerated(0.93) benign(0.004) TCGA-55-7910-01 10 25888263 25888263 T A GPR158 3'UTR 0.30 TCGA-55-7910-01 10 27031431 27031431 A T PDSS1 Silent p.P344P 0.41 TCGA-55-7910-01 10 38344866 38344866 G T ZNF33A Missense_Mutation p.G605V 0.39 deleterious(0) probably_damaging(1) TCGA-55-7910-01 10 50954876 50954876 C T OGDHL Missense_Mutation p.V406M 0.16 deleterious(0.02) probably_damaging(0.941) TCGA-55-7910-01 10 51974617 51974617 T C ASAH2 Silent p.V342V 0.23 TCGA-55-7910-01 11 106579342 106579342 C T GUCY1A2 Silent p.V660V 0.14 TCGA-55-7910-01 11 111365888 111365888 C A BTG4 Missense_Mutation p.R221I 0.53 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-55-7910-01 11 117299113 117299113 G T DSCAML1 Missense_Mutation p.S2091R 0.60 deleterious_low_confidence(0.03) benign(0.064) TCGA-55-7910-01 11 121986579 121986579 G T BLID Missense_Mutation p.L18I 0.62 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-55-7910-01 11 17793274 17793274 C A KCNC1 Silent p.T211T 0.30 TCGA-55-7910-01 11 30900224 30900224 A G DCDC1 Silent p.Y1753Y 0.75 TCGA-55-7910-01 11 33565445 33565445 T A KIAA1549L Missense_Mutation p.L482H 0.30 tolerated_low_confidence(0.08) possibly_damaging(0.778) TCGA-55-7910-01 11 3381717 3381717 C A ZNF195 Missense_Mutation p.G174V 0.20 tolerated(0.11) probably_damaging(0.994) TCGA-55-7910-01 11 35706848 35706848 G T TRIM44 Missense_Mutation p.L237F 0.56 deleterious(0.01) unknown(0) TCGA-55-7910-01 11 4843362 4843362 G C OR51F2 Silent p.R249R 0.15 TCGA-55-7910-01 11 55339753 55339753 C G OR4C16 Missense_Mutation p.S50R 0.24 deleterious(0) possibly_damaging(0.891) TCGA-55-7910-01 11 55563382 55563382 G C OR5D14 Silent p.L117L 0.42 TCGA-55-7910-01 11 55606955 55606955 G A OR5D16 Missense_Mutation p.C243Y 0.26 deleterious(0) possibly_damaging(0.624) TCGA-55-7910-01 11 56020466 56020466 G T OR5T3 Missense_Mutation p.R264M 0.30 deleterious(0) possibly_damaging(0.847) TCGA-55-7910-01 11 56044039 56044039 G A OR5T1 Missense_Mutation p.V309I 0.39 deleterious(0.02) benign(0.224) TCGA-55-7910-01 11 62292059 62292059 T C AHNAK Missense_Mutation p.K3277R 0.04 benign(0.159) TCGA-55-7910-01 11 68475774 68475774 C A MTL5 3'UTR 0.62 TCGA-55-7910-01 11 6891885 6891885 C T OR10A2 Silent p.N300N 0.23 TCGA-55-7910-01 11 6913141 6913141 C T OR2D2 Missense_Mutation p.M197I 0.20 tolerated(0.39) benign(0.02) TCGA-55-7910-01 11 70319439 70319439 G A SHANK2 Silent p.P1696P 0.15 TCGA-55-7910-01 11 75907590 75907590 C T WNT11 Missense_Mutation p.D86N 0.12 tolerated(0.41) probably_damaging(0.997) TCGA-55-7910-01 11 77727789 77727789 C A KCTD14 Silent p.A206A 0.63 TCGA-55-7910-01 11 77931390 77931390 G T GAB2 Missense_Mutation p.P621Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-55-7910-01 11 7982324 7982324 T A NLRP10 Missense_Mutation p.R279W 0.22 deleterious(0) probably_damaging(0.994) TCGA-55-7910-01 11 88241831 88241831 A T GRM5 Missense_Mutation p.C1190S 0.47 deleterious_low_confidence(0.05) benign(0.078) TCGA-55-7910-01 11 94113869 94113869 C A GPR83 Missense_Mutation p.D240Y 0.45 deleterious(0) probably_damaging(0.999) TCGA-55-7910-01 12 108589747 108589747 G T WSCD2 Silent p.S46S 0.40 TCGA-55-7910-01 12 108686241 108686241 C T CMKLR1 Missense_Mutation p.A167T 0.44 deleterious(0) possibly_damaging(0.644) TCGA-55-7910-01 12 109724502 109724502 G T FOXN4 Missense_Mutation p.P215H 0.26 deleterious(0.01) probably_damaging(0.992) TCGA-55-7910-01 12 112605160 112605160 C A HECTD4 Silent p.A4019A 0.32 TCGA-55-7910-01 12 122295276 122295276 G T HPD Silent p.T52T 0.42 TCGA-55-7910-01 12 130648739 130648739 G T FZD10 Missense_Mutation p.V418L 0.22 tolerated(0.06) benign(0.395) TCGA-55-7910-01 12 18234369 18234369 C T RERGL Missense_Mutation p.R125Q 0.24 tolerated(0.81) benign(0.004) TCGA-55-7910-01 12 25398282 25398282 C A KRAS Missense_Mutation p.G13C 0.58 deleterious(0.02) probably_damaging(0.997) TCGA-55-7910-01 12 28116374 28116374 C A PTHLH Missense_Mutation p.R144L 0.61 deleterious(0) probably_damaging(0.998) TCGA-55-7910-01 12 32949109 32949109 T C PKP2 Missense_Mutation p.Q808R 0.16 deleterious(0.02) benign(0.306) TCGA-55-7910-01 12 41323597 41323597 G A CNTN1 Splice_Site p.X166_splice 0.32 TCGA-55-7910-01 12 41323600 41323600 G A CNTN1 Missense_Mutation p.D167N 0.31 deleterious(0.02) possibly_damaging(0.837) TCGA-55-7910-01 12 45742393 45742393 G T ANO6 Missense_Mutation p.K263N 0.31 tolerated(0.29) probably_damaging(0.986) TCGA-55-7910-01 12 51749619 51749619 G A GALNT6 Missense_Mutation p.P576S 0.17 tolerated(0.07) benign(0.246) TCGA-55-7910-01 12 56537689 56537689 C T ESYT1 3'UTR 0.20 TCGA-55-7910-01 12 56815713 56815713 C A TIMELESS Missense_Mutation p.G871V 0.30 deleterious(0) probably_damaging(0.995) TCGA-55-7910-01 12 64812830 64812830 A G XPOT Missense_Mutation p.I149V 0.13 tolerated(0.2) benign(0.047) TCGA-55-7910-01 12 69044230 69044230 A T RAP1B Silent p.I36I 0.22 TCGA-55-7910-01 12 7639558 7639558 G T CD163 Nonsense_Mutation p.S692* 0.86 TCGA-55-7910-01 12 81112732 81112732 C A MYF5 Missense_Mutation p.L224I 0.45 tolerated(0.4) benign(0.004) TCGA-55-7910-01 12 92816356 92816356 C G CLLU1OS Missense_Mutation p.A37P 0.40 deleterious_low_confidence(0.04) possibly_damaging(0.82) TCGA-55-7910-01 12 99478745 99478745 C A ANKS1B Silent p.G861G 0.25 TCGA-55-7910-01 13 110827016 110827016 T A COL4A1 Silent p.P1093P 0.33 TCGA-55-7910-01 13 23913291 23913291 C G SACS Missense_Mutation p.R1575P 0.34 probably_damaging(0.998) TCGA-55-7910-01 13 61985470 61985470 C A PCDH20 Missense_Mutation p.R921M 0.32 tolerated(0.05) benign(0.031) TCGA-55-7910-01 13 77656071 77656071 G C MYCBP2 Silent p.V3660V 0.17 TCGA-55-7910-01 13 92797198 92797198 G T GPC5 Missense_Mutation p.G506V 0.38 deleterious(0) probably_damaging(0.991) TCGA-55-7910-01 14 105931137 105931137 C T MTA1 Missense_Mutation p.R491C 0.31 deleterious(0) possibly_damaging(0.794) TCGA-55-7910-01 14 106733189 106733189 C A IGHV1-24 Silent p.L102L 0.19 TCGA-55-7910-01 14 107078418 107078418 C A IGHV1-58 Silent p.L102L 0.18 TCGA-55-7910-01 14 20586021 20586021 C A OR4K17 Missense_Mutation p.D152E 0.34 deleterious(0) probably_damaging(1) TCGA-55-7910-01 14 23745473 23745473 C A HOMEZ Missense_Mutation p.A322S 0.59 tolerated(0.14) benign(0.26) TCGA-55-7910-01 14 24546879 24546879 C A CPNE6 Silent p.G538G 0.23 TCGA-55-7910-01 14 34419911 34419911 C A EGLN3 Silent p.L16L 0.13 TCGA-55-7910-01 14 62016507 62016507 G A PRKCH Silent p.E670E 0.28 TCGA-55-7910-01 14 75134250 75134250 C G AREL1 Silent p.A654A 0.35 TCGA-55-7910-01 14 77685892 77685892 C T TMEM63C Missense_Mutation p.R68C 0.36 deleterious(0) probably_damaging(0.999) TCGA-55-7910-01 14 86089618 86089618 A T FLRT2 Missense_Mutation p.D587V 0.28 deleterious(0) probably_damaging(0.999) TCGA-55-7910-01 14 94527356 94527356 G A DDX24 Silent p.L434L 0.28 TCGA-55-7910-01 15 101436218 101436218 G T ALDH1A3 Missense_Mutation p.Q249H 0.46 deleterious(0.02) benign(0.002) TCGA-55-7910-01 15 28413618 28413618 C T HERC2 Missense_Mutation p.E3450K 0.20 benign(0.024) TCGA-55-7910-01 15 34355468 34355468 C A CHRM5 Missense_Mutation p.Q184K 0.11 tolerated(0.29) probably_damaging(0.91) TCGA-55-7910-01 15 35275509 35275509 C A ZNF770 Missense_Mutation p.A43S 0.37 tolerated(0.06) probably_damaging(0.999) TCGA-55-7910-01 15 74623070 74623070 A C CCDC33 Missense_Mutation p.H508P 0.13 deleterious(0.02) probably_damaging(0.965) TCGA-55-7910-01 15 76632832 76632832 C G ISL2 Missense_Mutation p.R243G 0.08 deleterious(0) probably_damaging(0.999) TCGA-55-7910-01 15 84659884 84659884 G T ADAMTSL3 Missense_Mutation p.E1297D 0.44 tolerated(0.27) benign(0.008) TCGA-55-7910-01 15 90022631 90022631 G A RHCG Silent p.T253T 0.65 TCGA-55-7910-01 15 90172673 90172673 G T KIF7 Missense_Mutation p.D1150E 0.30 deleterious(0.01) possibly_damaging(0.885) TCGA-55-7910-01 16 17202591 17202591 C T XYLT1 Silent p.S947S 0.18 TCGA-55-7910-01 16 1841461 1841461 G A IGFALS Nonsense_Mutation p.Q358* 0.48 TCGA-55-7910-01 16 20477044 20477044 G A ACSM2A Missense_Mutation p.R128Q 0.29 deleterious(0.02) probably_damaging(1) TCGA-55-7910-01 16 20482929 20482929 G A ACSM2A Missense_Mutation p.C271Y 0.42 deleterious(0) possibly_damaging(0.599) TCGA-55-7910-01 16 2349403 2349403 C A ABCA3 Splice_Site p.X581_splice 0.46 TCGA-55-7910-01 16 24373222 24373222 T A CACNG3 3'UTR 0.32 TCGA-55-7910-01 16 31434769 31434769 G T ITGAD Missense_Mutation p.A986S 0.31 tolerated(0.7) benign(0.026) TCGA-55-7910-01 16 427672 427672 C T TMEM8A Missense_Mutation p.V100M 0.27 deleterious(0.01) benign(0.324) TCGA-55-7910-01 16 4664794 4664794 G C UBALD1 Missense_Mutation p.S2C 0.11 deleterious(0) probably_damaging(0.993) TCGA-55-7910-01 16 49669765 49669765 C G ZNF423 Missense_Mutation p.A1100P 0.29 tolerated(0.27) benign(0.086) TCGA-55-7910-01 16 50659433 50659433 G T NKD1 Missense_Mutation p.R135L 0.23 deleterious(0) probably_damaging(0.999) TCGA-55-7910-01 16 55522550 55522550 C T MMP2 Missense_Mutation p.R310C 0.31 deleterious(0) probably_damaging(0.986) TCGA-55-7910-01 16 66998614 66998614 C T CES3 Missense_Mutation p.P268L 0.36 tolerated(0.24) benign(0.035) TCGA-55-7910-01 16 84070480 84070480 C T SLC38A8 Missense_Mutation p.G72E 0.56 deleterious(0.01) probably_damaging(0.956) TCGA-55-7910-01 16 87493625 87493625 T A ZCCHC14 Missense_Mutation p.K91I 0.17 tolerated(0.08) probably_damaging(0.999) TCGA-55-7910-01 17 18052078 18052078 G A MYO15A Silent p.G2256G 0.33 TCGA-55-7910-01 17 33586242 33586242 G T SLFN5 Missense_Mutation p.R178I 0.62 tolerated(0.08) benign(0.265) TCGA-55-7910-01 17 39767599 39767599 C A KRT16 Nonsense_Mutation p.E257* 0.60 TCGA-55-7910-01 17 4647142 4647142 G C ZMYND15 Missense_Mutation p.G460R 0.32 tolerated(0.38) benign(0.158) TCGA-55-7910-01 17 48193255 48193255 G T SAMD14 Silent p.R201R 0.90 TCGA-55-7910-01 17 57643005 57643005 G T DHX40 5'UTR 0.67 TCGA-55-7910-01 17 60042681 60042681 C A MED13 Silent p.A1510A 0.65 TCGA-55-7910-01 17 72350399 72350400 CC - KIF19 Frame_Shift_Del p.P803Rfs*40 0.38 TCGA-55-7910-01 17 7579329 7579329 T C TP53 Missense_Mutation p.K120E 0.60 deleterious(0) probably_damaging(0.999) TCGA-55-7910-01 17 7750744 7750744 C T KDM6B Missense_Mutation p.R411W 0.58 unknown(0) TCGA-55-7910-01 17 80684407 80684407 C G FN3KRP Missense_Mutation p.Q174E 0.20 tolerated(0.25) benign(0.26) TCGA-55-7910-01 18 10471699 10471699 G - APCDD1 Frame_Shift_Del p.G140Afs*13 0.21 TCGA-55-7910-01 18 47800235 47800235 T C MBD1 Splice_Site p.X383_splice 0.54 TCGA-55-7910-01 18 59713182 59713182 C A PIGN Missense_Mutation p.M901I 0.56 tolerated(0.08) benign(0.009) TCGA-55-7910-01 19 19737900 19737900 T G LPAR2 Missense_Mutation p.Q65P 0.45 tolerated(0.12) possibly_damaging(0.699) TCGA-55-7910-01 19 36245390 36245390 C G LIN37 3'UTR 0.42 TCGA-55-7910-01 19 36297334 36297334 C A PRODH2 Missense_Mutation p.Q409H 0.18 tolerated(0.09) possibly_damaging(0.516) TCGA-55-7910-01 19 38632048 38632048 G T SIPA1L3 Missense_Mutation p.R1123L 0.28 tolerated(0.12) probably_damaging(0.926) TCGA-55-7910-01 19 43376001 43376001 C G PSG1 Missense_Mutation p.K209N 0.23 tolerated(0.06) benign(0.018) TCGA-55-7910-01 19 43858093 43858093 C A CD177 Silent p.T47T 0.36 TCGA-55-7910-01 19 51169805 51169805 T A SHANK1 Silent p.S1804S 0.33 TCGA-55-7910-01 19 54783406 54783406 C A LILRB2 Missense_Mutation p.G151V 0.44 deleterious(0.02) possibly_damaging(0.572) TCGA-55-7910-01 19 55800959 55800959 G C BRSK1 Silent p.A143A 0.15 TCGA-55-7910-01 19 57326157 57326157 G T PEG3 Missense_Mutation p.P1218H 0.18 deleterious(0.01) probably_damaging(0.99) TCGA-55-7910-01 19 57985525 57985525 C A ZNF772 Missense_Mutation p.G196V 0.16 tolerated(0.42) possibly_damaging(0.779) TCGA-55-7910-01 19 58118185 58118185 G T ZNF530 Missense_Mutation p.G431V 0.33 deleterious(0) probably_damaging(0.994) TCGA-55-7910-01 1 103348760 103348760 C A COL11A1 Nonsense_Mutation p.E1656* 0.18 TCGA-55-7910-01 1 104116893 104116893 G T AMY2B Silent p.L252L 0.14 TCGA-55-7910-01 1 114354773 114354773 G T RSBN1 Missense_Mutation p.Q88K 0.25 deleterious_low_confidence(0) benign(0.092) TCGA-55-7910-01 1 144881569 144881569 T G PDE4DIP Silent p.L1209L 0.13 TCGA-55-7910-01 1 156593864 156593864 C G HAPLN2 Silent p.G117G 0.31 TCGA-55-7910-01 1 163318841 163318841 G T NUF2 Missense_Mutation p.A411S 0.51 tolerated(0.78) benign(0.003) TCGA-55-7910-01 1 16918374 16918374 G T NBPF1 Missense_Mutation p.A48D 0.02 deleterious(0) possibly_damaging(0.82) TCGA-55-7910-01 1 175046861 175046861 G T TNN Missense_Mutation p.G103C 0.22 deleterious(0.04) benign(0.008) TCGA-55-7910-01 1 18152750 18152750 C T ACTL8 Silent p.S279S 0.22 TCGA-55-7910-01 1 186277358 186277358 C G PRG4 Missense_Mutation p.P836R 0.24 unknown(0) TCGA-55-7910-01 1 190129925 190129925 G C BRINP3 Missense_Mutation p.R353G 0.31 tolerated(0.34) benign(0.177) TCGA-55-7910-01 1 197062287 197062287 T A ASPM Silent p.I3063I 0.29 TCGA-55-7910-01 1 203029447 203029447 A T PPFIA4 Missense_Mutation p.I390F 0.18 deleterious(0.03) probably_damaging(0.979) TCGA-55-7910-01 1 204242843 204242843 T C PLEKHA6 Missense_Mutation p.T5A 0.19 tolerated(1) benign(0.001) TCGA-55-7910-01 1 21177969 21177969 C T EIF4G3 Missense_Mutation p.R1135H 0.32 deleterious(0) probably_damaging(0.993) TCGA-55-7910-01 1 212156079 212156079 C G INTS7 Missense_Mutation p.R357S 0.20 tolerated(0.79) benign(0.007) TCGA-55-7910-01 1 215256771 215256771 G T KCNK2 Nonsense_Mutation p.G15* 0.11 TCGA-55-7910-01 1 21582525 21582525 G A ECE1 Missense_Mutation p.T312M 0.19 tolerated(0.06) probably_damaging(1) TCGA-55-7910-01 1 22987797 22987797 C A C1QB Missense_Mutation p.T227N 0.19 tolerated(0.78) benign(0.28) TCGA-55-7910-01 1 241757995 241757995 T A OPN3 Splice_Site p.X316_splice 0.23 TCGA-55-7910-01 1 247921346 247921346 A T OR1C1 Missense_Mutation p.D121E 0.18 deleterious(0) probably_damaging(0.981) TCGA-55-7910-01 1 248814182 248814182 C A OR2T27 Nonsense_Mutation p.E2* 0.18 TCGA-55-7910-01 1 53072383 53072383 G T GPX7 Nonsense_Mutation p.E56* 0.39 TCGA-55-7910-01 1 57347210 57347210 G T C8A Missense_Mutation p.R186M 0.21 deleterious(0) probably_damaging(0.99) TCGA-55-7910-01 1 64669733 64669733 C T UBE2U 5'UTR 0.11 TCGA-55-7910-01 1 67242954 67242955 GG - TCTEX1D1 Frame_Shift_Del p.D120Lfs*7 0.14 TCGA-55-7910-01 1 92495812 92495812 C A EPHX4 Missense_Mutation p.P59H 0.54 deleterious(0.02) possibly_damaging(0.87) TCGA-55-7910-01 1 94655614 94655614 T C ARHGAP29 Missense_Mutation p.Q436R 0.34 deleterious(0.01) probably_damaging(0.985) TCGA-55-7910-01 20 13055138 13055138 T A SPTLC3 Missense_Mutation p.H200Q 0.05 tolerated(1) benign(0.006) TCGA-55-7910-01 20 1616067 1616067 G T SIRPG Missense_Mutation p.N309K 0.25 deleterious(0) probably_damaging(0.996) TCGA-55-7910-01 20 19956407 19956407 T G RIN2 Missense_Mutation p.S629A 0.23 tolerated(0.22) benign(0.388) TCGA-55-7910-01 20 2398055 2398055 C A TGM6 Missense_Mutation p.P505H 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-55-7910-01 20 2552823 2552823 A T TMC2 Splice_Site p.X185_splice 0.23 TCGA-55-7910-01 20 2552824 2552824 G T TMC2 Splice_Site p.X185_splice 0.22 TCGA-55-7910-01 20 30070126 30070126 G T REM1 Missense_Mutation p.G154C 0.40 deleterious(0) probably_damaging(0.971) TCGA-55-7910-01 20 40747103 40747103 C A PTPRT Missense_Mutation p.M974I 0.43 deleterious(0) probably_damaging(0.986) TCGA-55-7910-01 20 44352662 44352662 C A SPINT4 Missense_Mutation p.R87S 0.38 deleterious(0.01) benign(0.001) TCGA-55-7910-01 20 5294804 5294804 T C PROKR2 Missense_Mutation p.N71S 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-7910-01 20 61143577 61143577 G A C20orf166 5'Flank 0.34 TCGA-55-7910-01 21 11029688 11029688 G C BAGE2 RNA 0.09 TCGA-55-7910-01 21 32127623 32127623 C A KRTAP21-1 Missense_Mutation p.G25V 0.26 tolerated_low_confidence(0.55) unknown(0) TCGA-55-7910-01 21 41416154 41416154 C G DSCAM Missense_Mutation p.R1745P 0.53 deleterious(0) probably_damaging(0.988) TCGA-55-7910-01 22 17528314 17528314 C A CECR7 Intron 0.53 TCGA-55-7910-01 22 29678498 29678498 G A EWSR1 Missense_Mutation p.S184N 0.08 deleterious(0) probably_damaging(0.965) TCGA-55-7910-01 22 32789884 32789884 C T RTCB Missense_Mutation p.G429R 0.22 deleterious(0) probably_damaging(1) TCGA-55-7910-01 22 40060895 40060895 T A CACNA1I Missense_Mutation p.V1273D 0.43 deleterious(0) possibly_damaging(0.788) TCGA-55-7910-01 2 119603936 119603936 G C EN1 Missense_Mutation p.L270V 0.11 deleterious(0.03) benign(0.053) TCGA-55-7910-01 2 131096756 131096756 C A CCDC115 Missense_Mutation p.W160C 0.26 tolerated(0.1) possibly_damaging(0.849) TCGA-55-7910-01 2 136605641 136605641 C A MCM6 Missense_Mutation p.G679C 0.15 deleterious(0.03) benign(0.353) TCGA-55-7910-01 2 141092028 141092028 G T LRP1B Missense_Mutation p.P4073T 0.20 possibly_damaging(0.876) TCGA-55-7910-01 2 141607808 141607808 G T LRP1B Missense_Mutation p.T1601K 0.11 benign(0.403) TCGA-55-7910-01 2 141665475 141665476 GG A LRP1B Frame_Shift_Del p.P1164Lfs*15 0.23 TCGA-55-7910-01 2 164466137 164466137 C A FIGN Missense_Mutation p.K735N 0.14 deleterious(0) probably_damaging(0.991) TCGA-55-7910-01 2 166621499 166621499 T C GALNT3 Missense_Mutation p.N195D 0.18 deleterious(0) probably_damaging(0.998) TCGA-55-7910-01 2 168106147 168106147 C G XIRP2 Missense_Mutation p.L2749V 0.14 benign(0.089) TCGA-55-7910-01 2 169836414 169836414 G A ABCB11 Missense_Mutation p.R387C 0.26 deleterious(0.02) benign(0.035) TCGA-55-7910-01 2 17698963 17698963 C A RAD51AP2 Missense_Mutation p.Q240H 0.31 deleterious(0.01) probably_damaging(0.912) TCGA-55-7910-01 2 179496014 179496014 A T TTN Nonsense_Mutation p.Y14587* 0.42 TCGA-55-7910-01 2 18757471 18757471 A T NT5C1B Nonsense_Mutation p.C496* 0.42 TCGA-55-7910-01 2 1893073 1893073 G T MYT1L Silent p.P818P 0.34 TCGA-55-7910-01 2 197870518 197870518 G A ANKRD44 Silent p.A724A 0.31 TCGA-55-7910-01 2 215279078 215279078 T A VWC2L Missense_Mutation p.V54D 0.19 deleterious(0) probably_damaging(0.98) TCGA-55-7910-01 2 219903188 219903188 C A CCDC108 Missense_Mutation p.G89V 0.22 tolerated_low_confidence(0.08) possibly_damaging(0.801) TCGA-55-7910-01 2 220473022 220473022 G T STK11IP Missense_Mutation p.R502S 0.47 tolerated(0.84) benign(0.005) TCGA-55-7910-01 2 224463548 224463548 A G SCG2 Silent p.Y151Y 0.39 TCGA-55-7910-01 2 225717692 225717692 G A DOCK10 Missense_Mutation p.P679L 0.42 deleterious(0) possibly_damaging(0.861) TCGA-55-7910-01 2 228786155 228786155 G T DAW1 Missense_Mutation p.S364I 0.33 deleterious(0) probably_damaging(0.987) TCGA-55-7910-01 2 238296691 238296691 C A COL6A3 Silent p.G282G 0.30 TCGA-55-7910-01 2 27258027 27258027 G T TMEM214 Nonsense_Mutation p.E126* 0.07 TCGA-55-7910-01 2 27430475 27430475 G C SLC5A6 Missense_Mutation p.S15W 0.32 deleterious_low_confidence(0) possibly_damaging(0.648) TCGA-55-7910-01 2 32820195 32820195 G T BIRC6 Missense_Mutation p.M4532I 0.20 possibly_damaging(0.846) TCGA-55-7910-01 2 36775745 36775745 A G CRIM1 Silent p.R1004R 0.05 TCGA-55-7910-01 2 39088949 39088949 C T DHX57 Silent p.A201A 0.30 TCGA-55-7910-01 2 50765651 50765651 G T NRXN1 Missense_Mutation p.P668H 0.13 deleterious(0) probably_damaging(1) TCGA-55-7910-01 2 79253889 79253889 G A REG3G Missense_Mutation p.G43S 0.44 deleterious(0.01) benign(0.193) TCGA-55-7910-01 2 79363162 79363162 T A REG1P RNA 0.18 TCGA-55-7910-01 2 89417126 89417126 C A IGKV1-17 Missense_Mutation p.A20S 0.28 tolerated(0.24) benign(0.028) TCGA-55-7910-01 2 97031718 97031718 G T NCAPH Missense_Mutation p.Q601H 0.15 tolerated(0.14) benign(0.356) TCGA-55-7910-01 2 97368737 97368737 C T LMAN2L 3'Flank 0.10 TCGA-55-7910-01 3 108363053 108363053 A G DZIP3 Missense_Mutation p.H395R 0.20 tolerated_low_confidence(0.18) probably_damaging(0.996) TCGA-55-7910-01 3 111671538 111671538 G T PHLDB2 Missense_Mutation p.M917I 0.34 deleterious(0.03) benign(0.002) TCGA-55-7910-01 3 122418716 122418716 T G PARP14 Missense_Mutation p.S439A 0.34 tolerated(0.34) possibly_damaging(0.615) TCGA-55-7910-01 3 124540252 124540252 C A ITGB5 Missense_Mutation p.A284S 0.36 deleterious(0.01) probably_damaging(1) TCGA-55-7910-01 3 150931544 150931544 T A P2RY14 Silent p.S187S 0.35 TCGA-55-7910-01 3 164905774 164905774 G - SLITRK3 Frame_Shift_Del p.Q949Kfs*8 0.08 TCGA-55-7910-01 3 164907271 164907271 C T SLITRK3 Missense_Mutation p.G450R 0.45 tolerated(0.44) probably_damaging(1) TCGA-55-7910-01 3 164907524 164907524 G T SLITRK3 Silent p.T365T 0.53 TCGA-55-7910-01 3 194154508 194154508 C A ATP13A3 Missense_Mutation p.M746I 0.43 deleterious(0) probably_damaging(0.993) TCGA-55-7910-01 3 35763238 35763238 C T ARPP21 Silent p.T345T 0.30 TCGA-55-7910-01 3 36779279 36779279 C A DCLK3 Missense_Mutation p.R291L 0.34 deleterious(0.03) benign(0.071) TCGA-55-7910-01 3 38797411 38797411 G T SCN10A Missense_Mutation p.H443Q 0.67 tolerated(0.56) benign(0.001) TCGA-55-7910-01 3 43389307 43389307 C T SNRK Missense_Mutation p.P519L 0.34 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-7910-01 3 47882389 47882389 G C DHX30 Missense_Mutation p.R130P 0.58 tolerated(0.29) possibly_damaging(0.622) TCGA-55-7910-01 3 65346837 65346837 C A MAGI1 Intron 0.50 TCGA-55-7910-01 3 87027794 87027794 C A VGLL3 Missense_Mutation p.Q95H 0.41 deleterious(0.04) probably_damaging(0.998) TCGA-55-7910-01 4 113362382 113362382 G T ALPK1 3'UTR 0.27 TCGA-55-7910-01 4 11401183 11401183 C A HS3ST1 Silent p.P149P 0.22 TCGA-55-7910-01 4 114274486 114274486 G A ANK2 Missense_Mutation p.C1571Y 0.29 benign(0.012) TCGA-55-7910-01 4 122825631 122825631 C A TRPC3 Missense_Mutation p.G700V 0.63 deleterious(0) probably_damaging(0.998) TCGA-55-7910-01 4 123192196 123192196 C T KIAA1109 Missense_Mutation p.P2506L 0.47 possibly_damaging(0.575) TCGA-55-7910-01 4 148887931 148887931 C T ARHGAP10 Missense_Mutation p.L553F 0.17 deleterious(0) benign(0.046) TCGA-55-7910-01 4 154197272 154197272 A G TRIM2 Missense_Mutation p.H148R 0.17 deleterious(0) probably_damaging(0.991) TCGA-55-7910-01 4 155225830 155225830 G A DCHS2 Missense_Mutation p.H1411Y 0.29 tolerated(0.15) benign(0.009) TCGA-55-7910-01 4 166963182 166963182 G T TLL1 Missense_Mutation p.R422I 0.40 deleterious(0) probably_damaging(0.974) TCGA-55-7910-01 4 20709441 20709441 C A PACRGL Silent p.R75R 0.20 TCGA-55-7910-01 4 20709442 20709442 G C PACRGL Missense_Mutation p.R75P 0.20 deleterious(0) possibly_damaging(0.669) TCGA-55-7910-01 4 57181772 57181772 C A KIAA1211 Silent p.R702R 0.34 TCGA-55-7910-01 4 65145914 65145914 C A TECRL Missense_Mutation p.G323V 0.33 tolerated(0.07) possibly_damaging(0.904) TCGA-55-7910-01 4 65145918 65145918 C A TECRL Splice_Site p.X322_splice 0.17 TCGA-55-7910-01 4 70156385 70156385 C G UGT2B28 Missense_Mutation p.P389R 0.15 deleterious(0) probably_damaging(1) TCGA-55-7910-01 4 70823321 70823321 G C CSN2 Missense_Mutation p.P116A 0.09 deleterious(0.03) possibly_damaging(0.811) TCGA-55-7910-01 4 76416960 76416960 G A RCHY1 Silent p.V161V 0.16 TCGA-55-7910-01 4 81952571 81952571 G T BMP3 Missense_Mutation p.G45C 0.35 deleterious(0.01) possibly_damaging(0.631) TCGA-55-7910-01 4 89408247 89408247 G A HERC5 Missense_Mutation p.V627I 0.38 tolerated(0.23) probably_damaging(0.988) TCGA-55-7910-01 4 90647703 90647703 C A SNCA 3'UTR 0.53 TCGA-55-7910-01 4 94690564 94690564 G - GRID2 Frame_Shift_Del p.W855* 0.10 TCGA-55-7910-01 5 122281796 122281796 G A SNX24 Missense_Mutation p.R64K 0.23 tolerated(0.26) probably_damaging(0.992) TCGA-55-7910-01 5 127627283 127627283 C A FBN2 Missense_Mutation p.G2077V 0.65 deleterious(0) probably_damaging(0.999) TCGA-55-7910-01 5 128351612 128351612 C A SLC27A6 Missense_Mutation p.A335E 0.18 deleterious(0) probably_damaging(0.998) TCGA-55-7910-01 5 131303681 131303681 G A ACSL6 Silent p.L516L 0.49 TCGA-55-7910-01 5 133895665 133895665 G T JADE2 Nonsense_Mutation p.E153* 0.48 TCGA-55-7910-01 5 140603408 140603408 G T PCDHB14 Nonsense_Mutation p.E111* 0.56 TCGA-55-7910-01 5 143586715 143586715 C T KCTD16 Silent p.S146S 0.24 TCGA-55-7910-01 5 146017924 146017924 G T PPP2R2B Missense_Mutation p.A230E 0.47 deleterious(0.01) benign(0.198) TCGA-55-7910-01 5 17353980 17353980 G T CTD-2139B15.2 5'Flank 0.07 TCGA-55-7910-01 5 178040495 178040495 G C CLK4 Missense_Mutation p.Q269E 0.91 deleterious(0) probably_damaging(0.985) TCGA-55-7910-01 5 178416315 178416315 T G GRM6 Missense_Mutation p.K368N 0.44 tolerated(0.09) possibly_damaging(0.67) TCGA-55-7910-01 5 23518025 23518025 C A PRDM9 Missense_Mutation p.R113S 0.29 tolerated_low_confidence(1) benign(0) TCGA-55-7910-01 5 33527434 33527434 G T ADAMTS12 Missense_Mutation p.F1548L 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-55-7910-01 5 35070319 35070319 G T PRLR Missense_Mutation p.P198T 0.20 deleterious(0.04) benign(0.377) TCGA-55-7910-01 5 43174673 43174673 G T ZNF131 Missense_Mutation p.R403M 0.50 tolerated(0.05) probably_damaging(0.935) TCGA-55-7910-01 5 5303568 5303568 G T ADAMTS16 Missense_Mutation p.G993W 0.21 deleterious(0) probably_damaging(1) TCGA-55-7910-01 5 56778406 56778406 G A ACTBL2 Silent p.G43G 0.17 TCGA-55-7910-01 5 70785246 70785246 G T BDP1 Missense_Mutation p.C410F 0.38 deleterious(0) benign(0.422) TCGA-55-7910-01 5 82789654 82789654 T A VCAN Missense_Mutation p.Y218N 0.56 deleterious(0) probably_damaging(0.943) TCGA-55-7910-01 6 114281109 114281109 C A HDAC2 Missense_Mutation p.L42F 0.25 deleterious(0) probably_damaging(1) TCGA-55-7910-01 6 117824985 117824985 G T DCBLD1 Missense_Mutation p.K56N 0.36 tolerated(0.06) possibly_damaging(0.607) TCGA-55-7910-01 6 138584561 138584561 C G KIAA1244 Missense_Mutation p.C647W 0.36 deleterious(0.05) benign(0.415) TCGA-55-7910-01 6 143093732 143093732 C A HIVEP2 Missense_Mutation p.S715I 0.17 deleterious(0.01) benign(0.038) TCGA-55-7910-01 6 158507936 158507936 G T SYNJ2 Missense_Mutation p.E1086D 0.33 tolerated_low_confidence(1) benign(0.001) TCGA-55-7910-01 6 26509247 26509247 G T BTN1A1 Missense_Mutation p.A476S 0.66 tolerated(0.54) benign(0.044) TCGA-55-7910-01 6 31475190 31475190 G A MICB Silent p.V302V 0.68 TCGA-55-7910-01 6 32171982 32171982 G A NOTCH4 Missense_Mutation p.P1017L 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-55-7910-01 6 35280250 35280250 C T DEF6 Missense_Mutation p.R199W 0.40 deleterious(0.01) possibly_damaging(0.613) TCGA-55-7910-01 6 36040673 36040673 G C MAPK14 Missense_Mutation p.G110A 0.21 tolerated(0.12) benign(0.114) TCGA-55-7910-01 6 49989675 49989675 G A DEFB110 5'UTR 0.25 TCGA-55-7910-01 6 55223787 55223787 C T GFRAL Missense_Mutation p.T268I 0.34 tolerated(0.24) benign(0.03) TCGA-55-7910-01 6 73787156 73787156 T G KCNQ5 Missense_Mutation p.V243G 0.40 deleterious(0) probably_damaging(0.997) TCGA-55-7910-01 6 76734925 76734926 - T IMPG1 Frame_Shift_Ins p.I183Nfs*20 0.16 TCGA-55-7910-01 6 83075380 83075380 C T TPBG Silent p.P234P 0.16 TCGA-55-7910-01 6 84765088 84765088 T A MRAP2 Silent p.S17S 0.21 TCGA-55-7910-01 6 97063599 97063599 A G FHL5 Missense_Mutation p.K269R 0.10 tolerated(0.1) benign(0.175) TCGA-55-7910-01 7 103180648 103180648 T A RELN Missense_Mutation p.D2309V 0.27 deleterious(0) probably_damaging(1) TCGA-55-7910-01 7 103180650 103180650 G T RELN Silent p.I2308I 0.27 TCGA-55-7910-01 7 1131434 1131434 C T GPER1 Missense_Mutation p.P24S 0.19 tolerated_low_confidence(0.45) benign(0) TCGA-55-7910-01 7 127670042 127670042 C A LRRC4 Missense_Mutation p.V218L 0.19 tolerated(0.11) benign(0.009) TCGA-55-7910-01 7 128035227 128035227 C A IMPDH1 Missense_Mutation p.V455L 0.47 deleterious(0.04) benign(0.297) TCGA-55-7910-01 7 139726083 139726083 C A PARP12 Missense_Mutation p.G565V 0.31 deleterious(0) probably_damaging(1) TCGA-55-7910-01 7 139741443 139741443 C A PARP12 Splice_Site p.X394_splice 0.18 TCGA-55-7910-01 7 148311372 148311372 C G C7orf33 Missense_Mutation p.T148R 0.41 deleterious_low_confidence(0) benign(0) TCGA-55-7910-01 7 149477086 149477086 C G SSPO RNA 0.21 TCGA-55-7910-01 7 20449323 20449323 C G ITGB8 Missense_Mutation p.I703M 0.19 tolerated(0.05) possibly_damaging(0.868) TCGA-55-7910-01 7 27134105 27134105 G T HOXA1 Missense_Mutation p.P321H 0.31 deleterious(0) probably_damaging(0.95) TCGA-55-7910-01 7 6204474 6204474 G T CYTH3 3'UTR 0.52 TCGA-55-7910-01 7 63981936 63981936 A T ZNF680 Missense_Mutation p.I399N 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-7910-01 7 73520557 73520557 C A LIMK1 Silent p.R289R 0.04 TCGA-55-7910-01 7 7415129 7415129 C A COL28A1 Splice_Site p.X775_splice 0.41 TCGA-55-7910-01 7 82474677 82474677 T A PCLO Silent p.S4652S 0.14 TCGA-55-7910-01 7 82474784 82474784 G A PCLO Missense_Mutation p.P4617S 0.17 unknown(0) TCGA-55-7910-01 7 82584021 82584021 G C PCLO Missense_Mutation p.T2083S 0.09 unknown(0) TCGA-55-7910-01 7 83590845 83590845 C A SEMA3A Nonsense_Mutation p.E720* 0.37 TCGA-55-7910-01 7 84727276 84727276 G C SEMA3D Missense_Mutation p.L53V 0.40 tolerated(0.08) benign(0.074) TCGA-55-7910-01 7 87190657 87190657 G T ABCB1 Missense_Mutation p.A250D 0.09 deleterious(0) probably_damaging(0.992) TCGA-55-7910-01 7 92760594 92760594 C A SAMD9L Missense_Mutation p.R1564I 0.15 deleterious(0) possibly_damaging(0.789) TCGA-55-7910-01 7 92953017 92953017 A G CCDC132 Missense_Mutation p.I650M 0.18 deleterious(0) benign(0.245) TCGA-55-7910-01 7 99696770 99696770 C T MCM7 Missense_Mutation p.R153Q 0.18 deleterious(0) benign(0.048) TCGA-55-7910-01 8 100831070 100831070 C T VPS13B Nonsense_Mutation p.Q2884* 0.27 TCGA-55-7910-01 8 105025751 105025751 C A RIMS2 Silent p.T1042T 0.47 TCGA-55-7910-01 8 110131524 110131524 C A TRHR Missense_Mutation p.A346D 0.20 tolerated(0.05) benign(0.008) TCGA-55-7910-01 8 113516136 113516136 C A CSMD3 Nonsense_Mutation p.G1656* 0.15 TCGA-55-7910-01 8 113933929 113933929 G T CSMD3 Silent p.G520G 0.32 TCGA-55-7910-01 8 113988224 113988224 C A CSMD3 Missense_Mutation p.R395L 0.20 tolerated_low_confidence(0.16) benign(0) TCGA-55-7910-01 8 121457828 121457828 G C MTBP Missense_Mutation p.D40H 0.14 tolerated_low_confidence(0.14) probably_damaging(0.984) TCGA-55-7910-01 8 133041363 133041363 C A OC90 Missense_Mutation p.R365S 0.19 deleterious(0.04) benign(0.109) TCGA-55-7910-01 8 2054110 2054110 C A MYOM2 Missense_Mutation p.A938E 0.24 tolerated(0.73) probably_damaging(0.966) TCGA-55-7910-01 8 2910079 2910079 T A CSMD1 Missense_Mutation p.H2522L 0.20 benign(0.044) TCGA-55-7910-01 8 2910159 2910159 A T CSMD1 Nonsense_Mutation p.C2495* 0.56 TCGA-55-7910-01 8 39537692 39537692 G T ADAM18 Missense_Mutation p.D590Y 0.20 deleterious(0.04) probably_damaging(0.983) TCGA-55-7910-01 8 39646227 39646227 G A ADAM2 Silent p.V201V 0.18 TCGA-55-7910-01 8 53085023 53085023 A T ST18 Nonsense_Mutation p.L133* 0.48 TCGA-55-7910-01 8 53547495 53547495 A G RB1CC1 Silent p.L1476L 0.26 TCGA-55-7910-01 8 6366501 6366501 C T ANGPT2 Missense_Mutation p.G428R 0.37 tolerated(0.1) benign(0.413) TCGA-55-7910-01 8 69380961 69380961 G C C8orf34 Missense_Mutation p.W214C 0.28 tolerated(0.11) probably_damaging(1) TCGA-55-7910-01 8 77762506 77762506 C A ZFHX4 Missense_Mutation p.P1291Q 0.23 benign(0.065) TCGA-55-7910-01 8 77767159 77767159 G T ZFHX4 Missense_Mutation p.V2668L 0.10 benign(0.057) TCGA-55-7910-01 9 117783531 117783531 G T TNC Missense_Mutation p.H2171N 0.38 deleterious(0) probably_damaging(0.998) TCGA-55-7910-01 9 119976934 119976934 G T ASTN2 Missense_Mutation p.P240T 0.27 deleterious_low_confidence(0) unknown(0) TCGA-55-7910-01 9 124794027 124794027 T A TTLL11 Missense_Mutation p.D313V 0.17 deleterious(0.02) benign(0.173) TCGA-55-7910-01 9 130507126 130507126 C T SH2D3C Missense_Mutation p.R506Q 0.05 tolerated(0.28) benign(0.029) TCGA-55-7910-01 9 137593141 137593141 G A COL5A1 Missense_Mutation p.V206M 0.14 possibly_damaging(0.861) TCGA-55-7910-01 9 139101020 139101020 C T QSOX2 Missense_Mutation p.E551K 0.20 tolerated(0.38) benign(0.302) TCGA-55-7910-01 9 140056880 140056880 C A GRIN1 Missense_Mutation p.N613K 0.33 tolerated(0.24) benign(0.401) TCGA-55-7910-01 9 140242555 140242555 C A EXD3 Missense_Mutation p.G656C 0.16 deleterious(0.02) possibly_damaging(0.905) TCGA-55-7910-01 9 140242657 140242657 C A EXD3 Missense_Mutation p.A622S 0.14 tolerated(0.43) benign(0.039) TCGA-55-7910-01 9 140349708 140349708 G A NSMF Silent p.S254S 0.24 TCGA-55-7910-01 9 26978150 26978150 G A IFT74 Missense_Mutation p.G49S 0.26 deleterious(0.03) possibly_damaging(0.559) TCGA-55-7910-01 9 36657331 36657331 A T MELK Missense_Mutation p.T383S 0.12 tolerated(0.56) benign(0.004) TCGA-55-7910-01 9 79319005 79319005 C A PRUNE2 Missense_Mutation p.K2508N 0.22 tolerated(0.11) benign(0.249) TCGA-55-7910-01 X 102979908 102979908 C T GLRA4 Silent p.Q40Q 0.15 TCGA-55-7910-01 X 106109122 106109122 C T TBC1D8B Nonsense_Mutation p.Q841* 0.20 TCGA-55-7910-01 X 106456220 106456220 C A PIH1D3 Missense_Mutation p.L39I 0.23 tolerated(0.1) possibly_damaging(0.811) TCGA-55-7910-01 X 107084433 107084433 C G MID2 Missense_Mutation p.R180G 0.10 deleterious(0) probably_damaging(0.995) TCGA-55-7910-01 X 11316934 11316934 C A AMELX Missense_Mutation p.H151Q 0.22 tolerated(0.66) unknown(0) TCGA-55-7910-01 X 123587252 123587252 T A TENM1 Missense_Mutation p.I1347F 0.17 deleterious(0.01) benign(0.271) TCGA-55-7910-01 X 125299578 125299578 C A DCAF12L2 Missense_Mutation p.Q110H 0.45 deleterious(0) probably_damaging(0.971) TCGA-55-7910-01 X 128880265 128880265 T A XPNPEP2 Missense_Mutation p.W118R 0.16 deleterious(0) probably_damaging(0.969) TCGA-55-7910-01 X 135630895 135630895 G T VGLL1 Missense_Mutation p.R121M 0.20 tolerated(0.09) possibly_damaging(0.659) TCGA-55-7910-01 X 136649747 136649747 G T ZIC3 Missense_Mutation p.W299C 0.15 deleterious(0) probably_damaging(0.968) TCGA-55-7910-01 X 14915340 14915340 G T MOSPD2 Nonsense_Mutation p.E153* 0.16 TCGA-55-7910-01 X 151533000 151533000 C G GABRA3 Missense_Mutation p.G15R 0.19 tolerated_low_confidence(0.35) probably_damaging(0.979) TCGA-55-7910-01 X 152018810 152018810 C A NSDHL Missense_Mutation p.A37D 0.19 tolerated(0.24) benign(0.008) TCGA-55-7910-01 X 153047046 153047046 G C SRPK3 Missense_Mutation p.V93L 0.21 deleterious(0) benign(0.067) TCGA-55-7910-01 X 153996927 153996927 C A DKC1 Intron 0.18 TCGA-55-7910-01 X 154091369 154091369 C T F8 Missense_Mutation p.C2188Y 0.18 deleterious(0) probably_damaging(1) TCGA-55-7910-01 X 155233195 155233195 A T IL9R Missense_Mutation p.Q75L 0.23 tolerated(0.13) benign(0.167) TCGA-55-7910-01 X 17744497 17744497 C A NHS Silent p.A736A 0.50 TCGA-55-7910-01 X 21545028 21545028 C T CNKSR2 Missense_Mutation p.S334F 0.49 deleterious(0) benign(0.418) TCGA-55-7910-01 X 21674057 21674057 C A KLHL34 Missense_Mutation p.R617L 0.62 deleterious(0) benign(0.024) TCGA-55-7910-01 X 23018323 23018323 C A DDX53 Missense_Mutation p.P50Q 0.41 deleterious(0) probably_damaging(0.992) TCGA-55-7910-01 X 23685897 23685897 C A PRDX4 Silent p.A70A 0.60 TCGA-55-7910-01 X 27998829 27998829 C G DCAF8L1 Missense_Mutation p.G208A 0.37 deleterious(0) probably_damaging(0.994) TCGA-55-7910-01 X 3002584 3002584 G T ARSF Missense_Mutation p.S236I 0.21 tolerated(0.35) benign(0.366) TCGA-55-7910-01 X 34962304 34962304 C A FAM47B Missense_Mutation p.D452E 0.17 tolerated(0.16) benign(0.41) TCGA-55-7910-01 X 37545435 37545435 T G XK Missense_Mutation p.L74R 0.25 deleterious(0) probably_damaging(0.996) TCGA-55-7910-01 X 39930369 39930369 T A BCOR Missense_Mutation p.E1032V 0.48 deleterious(0) possibly_damaging(0.715) TCGA-55-7910-01 X 46332781 46332781 T G KRBOX4 3'UTR 0.20 TCGA-55-7910-01 X 48547293 48547293 C A WAS Silent p.P392P 0.50 TCGA-55-7910-01 X 49114015 49114015 G C FOXP3 Missense_Mutation p.T108R 0.35 tolerated_low_confidence(0.23) possibly_damaging(0.47) TCGA-55-7910-01 X 49236865 49236865 G T GAGE2B Missense_Mutation p.R12I 0.35 possibly_damaging(0.876) TCGA-55-7910-01 X 54578128 54578128 C A GNL3L Missense_Mutation p.P331T 0.35 deleterious(0.01) probably_damaging(1) TCGA-55-7910-01 X 64138862 64138862 C A ZC4H2 Intron 0.33 TCGA-55-7910-01 X 69283183 69283183 A T OTUD6A Missense_Mutation p.N270I 0.13 deleterious(0) probably_damaging(0.988) TCGA-55-7910-01 X 70598689 70598689 G T TAF1 Nonsense_Mutation p.E410* 0.32 TCGA-55-7910-01 X 70608668 70608668 G T TAF1 Nonsense_Mutation p.E904* 0.50 TCGA-55-7910-01 X 77912559 77912559 A T ZCCHC5 Missense_Mutation p.H453Q 0.73 deleterious(0) probably_damaging(0.999) TCGA-55-7910-01 X 77912669 77912669 C A ZCCHC5 Missense_Mutation p.A417S 0.51 tolerated(0.18) benign(0.008) TCGA-55-7910-01 X 79282217 79282217 C A TBX22 Silent p.S216S 0.50 TCGA-55-7910-01 X 84520160 84520160 G A ZNF711 Missense_Mutation p.S272N 0.37 tolerated(1) benign(0.001) TCGA-55-7910-01 X 85769308 85769308 G A DACH2 Missense_Mutation p.R185H 0.10 deleterious(0.02) benign(0.189) TCGA-55-7910-01 X 86880772 86880772 G C KLHL4 Missense_Mutation p.V434L 0.11 tolerated(0.05) benign(0.015) TCGA-55-7910-01 X 91642792 91642792 G T PCDH11X Missense_Mutation p.G1068V 0.12 deleterious(0.02) possibly_damaging(0.843) TCGA-55-7911-01 10 104416839 104416839 G T TRIM8 Missense_Mutation p.G462C 0.14 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-55-7911-01 10 105205183 105205183 G T PDCD11 Missense_Mutation p.M1831I 0.16 tolerated(0.5) benign(0.401) TCGA-55-7911-01 10 106401672 106401672 A C SORCS3 Missense_Mutation p.H196P 0.15 deleterious(0) possibly_damaging(0.883) TCGA-55-7911-01 10 26589834 26589834 C A GAD2 Missense_Mutation p.H568N 0.20 tolerated(0.17) benign(0.104) TCGA-55-7911-01 10 30656775 30656775 C A AL161651.1 5'Flank 0.29 TCGA-55-7911-01 10 52103589 52103589 C A SGMS1 Missense_Mutation p.G96C 0.12 deleterious(0) possibly_damaging(0.786) TCGA-55-7911-01 10 71158462 71158462 G C HK1 Missense_Mutation p.R833S 0.16 deleterious(0) probably_damaging(0.997) TCGA-55-7911-01 11 100179207 100179207 A T CNTN5 Intron 0.13 TCGA-55-7911-01 11 104915304 104915304 A C CARD16 Nonsense_Mutation p.L30* 0.22 TCGA-55-7911-01 11 107832694 107832694 C T RAB39A Missense_Mutation p.R84C 0.12 deleterious(0) probably_damaging(1) TCGA-55-7911-01 11 123900657 123900657 G A OR10G8 Missense_Mutation p.E110K 0.10 deleterious(0) benign(0.112) TCGA-55-7911-01 11 129748203 129748203 C A NFRKB Splice_Site p.X529_splice 0.16 TCGA-55-7911-01 11 14992652 14992652 C G CALCA Splice_Site p.X29_splice 0.10 TCGA-55-7911-01 11 1643028 1643028 C A KRTAP5-4 Missense_Mutation p.G99V 0.12 deleterious_low_confidence(0) unknown(0) TCGA-55-7911-01 11 17794192 17794192 C T KCNC1 Intron 0.04 TCGA-55-7911-01 11 22399021 22399021 C A SLC17A6 Missense_Mutation p.A495E 0.14 deleterious(0) benign(0.104) TCGA-55-7911-01 11 33566850 33566850 C T KIAA1549L Missense_Mutation p.A807V 0.09 deleterious(0.03) benign(0.08) TCGA-55-7911-01 11 46342033 46342033 G A CREB3L1 Missense_Mutation p.G493S 0.19 tolerated_low_confidence(0.8) benign(0.001) TCGA-55-7911-01 11 55038332 55038332 C A TRIM48 3'UTR 0.11 TCGA-55-7911-01 11 55579671 55579671 C T OR5L1 Silent p.S243S 0.12 TCGA-55-7911-01 11 55579672 55579672 C A OR5L1 Missense_Mutation p.H244N 0.12 deleterious(0) probably_damaging(0.988) TCGA-55-7911-01 11 55798471 55798471 C A OR5AS1 Missense_Mutation p.Q193K 0.12 deleterious(0.03) benign(0.001) TCGA-55-7911-01 11 55798836 55798836 G T OR5AS1 Missense_Mutation p.W314C 0.18 deleterious(0.04) benign(0) TCGA-55-7911-01 11 55999767 55999767 C A OR5T2 Missense_Mutation p.V299L 0.14 tolerated(0.64) benign(0.097) TCGA-55-7911-01 11 56380698 56380698 T A OR5M1 Missense_Mutation p.Y94F 0.19 tolerated(0.95) benign(0.272) TCGA-55-7911-01 11 57427353 57427353 C T CLP1 Silent p.L135L 0.14 TCGA-55-7911-01 11 59622172 59622172 G T TCN1 Missense_Mutation p.F358L 0.18 tolerated(0.26) probably_damaging(0.998) TCGA-55-7911-01 11 62303495 62303495 C A AHNAK Missense_Mutation p.A26S 0.13 possibly_damaging(0.537) TCGA-55-7911-01 11 64359055 64359055 C T SLC22A12 Silent p.L9L 0.13 TCGA-55-7911-01 11 67953299 67953299 C G SUV420H1 Missense_Mutation p.S86T 0.20 tolerated(0.05) benign(0.235) TCGA-55-7911-01 11 73078683 73078683 C T ARHGEF17 Missense_Mutation p.P2017L 0.15 tolerated(0.07) benign(0.001) TCGA-55-7911-01 11 86209163 86209163 C A ME3 Missense_Mutation p.V183L 0.12 deleterious(0) benign(0.067) TCGA-55-7911-01 11 89405081 89405081 C A FOLH1B RNA 0.07 TCGA-55-7911-01 11 92086148 92086148 A T FAT3 Missense_Mutation p.L290F 0.07 benign(0.006) TCGA-55-7911-01 12 101012237 101012237 G C GAS2L3 Missense_Mutation p.E174Q 0.13 deleterious(0.02) possibly_damaging(0.786) TCGA-55-7911-01 12 10228148 10228148 A C CLEC1A Silent p.L166L 0.36 TCGA-55-7911-01 12 104089428 104089428 C T STAB2 Splice_Site p.X1158_splice 0.09 TCGA-55-7911-01 12 106729479 106729479 T G TCP11L2 Missense_Mutation p.S279A 0.10 tolerated(0.68) benign(0.164) TCGA-55-7911-01 12 119772994 119772994 C A CCDC60 Missense_Mutation p.P5T 0.05 deleterious_low_confidence(0.02) possibly_damaging(0.483) TCGA-55-7911-01 12 123082445 123082445 C A KNTC1 Missense_Mutation p.T1508K 0.10 tolerated(0.12) benign(0.07) TCGA-55-7911-01 12 133220029 133220029 T A POLE Missense_Mutation p.M1470L 0.07 tolerated(0.49) benign(0.001) TCGA-55-7911-01 12 25380196 25380196 T A KRAS Nonsense_Mutation p.K88* 0.23 TCGA-55-7911-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.37 deleterious(0) possibly_damaging(0.479) TCGA-55-7911-01 12 33592396 33592396 G T SYT10 Missense_Mutation p.T21N 0.31 tolerated(0.08) benign(0.022) TCGA-55-7911-01 12 4881637 4881637 C G GALNT8 Silent p.T596T 0.10 TCGA-55-7911-01 12 65445163 65445163 C G WIF1 Missense_Mutation p.R369P 0.25 tolerated_low_confidence(0.33) benign(0) TCGA-55-7911-01 12 71314178 71314178 G T PTPRR 5'UTR 0.24 TCGA-55-7911-01 12 81768487 81768487 G T PPFIA2 Missense_Mutation p.Q398K 0.15 deleterious(0) probably_damaging(0.967) TCGA-55-7911-01 12 8276539 8276539 A G CLEC4A Missense_Mutation p.N22S 0.38 tolerated(0.74) benign(0.007) TCGA-55-7911-01 12 94634438 94634438 C A PLXNC1 Silent p.I766I 0.16 TCGA-55-7911-01 12 9907713 9907713 T A CD69 Missense_Mutation p.N111I 0.35 deleterious(0.03) benign(0.232) TCGA-55-7911-01 13 100617983 100617983 C A ZIC5 Missense_Mutation p.S547I 0.12 deleterious(0) probably_damaging(0.993) TCGA-55-7911-01 13 32356828 32356828 T G RXFP2 Missense_Mutation p.N291K 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-7911-01 13 73352425 73352425 C T DIS3 Silent p.L160L 0.12 TCGA-55-7911-01 13 78474780 78474780 C A EDNRB Missense_Mutation p.V411L 0.12 tolerated(0.3) possibly_damaging(0.872) TCGA-55-7911-01 14 102483598 102483598 T C DYNC1H1 Silent p.Y2674Y 0.22 TCGA-55-7911-01 14 105833558 105833558 A G PACS2 Silent p.Q144Q 0.14 TCGA-55-7911-01 14 105960174 105960174 C T C14orf80 Silent p.I196I 0.15 TCGA-55-7911-01 14 20248765 20248765 G T OR4M1 Missense_Mutation p.G95V 0.16 tolerated(0.37) benign(0.021) TCGA-55-7911-01 14 24738889 24738889 C A RABGGTA Missense_Mutation p.D147Y 0.24 deleterious(0) probably_damaging(1) TCGA-55-7911-01 14 25044576 25044576 G T CTSG Missense_Mutation p.P33H 0.14 deleterious(0.01) probably_damaging(1) TCGA-55-7911-01 14 47314968 47314970 CTC TA MDGA2 Splice_Site p.X996_splice 0.22 TCGA-55-7911-01 14 60074098 60074098 G A RTN1 Silent p.Y626Y 0.11 TCGA-55-7911-01 14 70442456 70442456 T A SMOC1 Missense_Mutation p.Y135N 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-7911-01 14 75614413 75614413 A T TMED10 Missense_Mutation p.V122E 0.21 deleterious(0.04) possibly_damaging(0.883) TCGA-55-7911-01 14 80677827 80677827 C T DIO2 5'UTR 0.17 TCGA-55-7911-01 15 100331319 100331319 G T AC090825.1 5'Flank 0.08 TCGA-55-7911-01 15 25456960 25456960 C A SNORD115-23 RNA 0.15 TCGA-55-7911-01 15 27222209 27222209 G A GABRG3 Silent p.L38L 0.23 TCGA-55-7911-01 15 27777771 27777771 C A GABRG3 Missense_Mutation p.P383Q 0.15 tolerated(0.1) probably_damaging(0.951) TCGA-55-7911-01 15 31233850 31233850 G A MTMR10 Silent p.N719N 0.33 TCGA-55-7911-01 15 48063809 48063809 G A SEMA6D Missense_Mutation p.V1017M 0.20 tolerated(0.21) benign(0.083) TCGA-55-7911-01 15 49059641 49059641 G A CEP152 Nonsense_Mutation p.Q680* 0.11 TCGA-55-7911-01 15 50399202 50399202 C T ATP8B4 5'UTR 0.17 TCGA-55-7911-01 15 72040905 72040905 G T THSD4 Missense_Mutation p.S796I 0.15 deleterious(0) possibly_damaging(0.806) TCGA-55-7911-01 15 78474874 78474874 G A ACSBG1 Silent p.C276C 0.08 TCGA-55-7911-01 15 88678344 88678344 C G NTRK3 Missense_Mutation p.E398Q 0.15 tolerated(0.37) benign(0.002) TCGA-55-7911-01 16 49313330 49313330 C A CBLN1 Silent p.L189L 0.15 TCGA-55-7911-01 16 55729223 55729223 C T SLC6A2 Silent p.I352I 0.11 TCGA-55-7911-01 16 57265200 57265200 C T RSPRY1 Silent p.L500L 0.09 TCGA-55-7911-01 16 58220711 58220711 A C CSNK2A2 Missense_Mutation p.L89R 0.15 deleterious(0) probably_damaging(0.969) TCGA-55-7911-01 16 71509851 71509851 C A ZNF19 Missense_Mutation p.G200V 0.14 tolerated(0.5) possibly_damaging(0.689) TCGA-55-7911-01 16 75563351 75563351 G A CHST5 Missense_Mutation p.A311V 0.16 tolerated(0.1) benign(0.309) TCGA-55-7911-01 16 8868846 8868846 G T ABAT Missense_Mutation p.V352L 0.20 tolerated(0.27) benign(0.001) TCGA-55-7911-01 17 10447064 10447064 G A MYH2 Silent p.N235N 0.21 TCGA-55-7911-01 17 21319335 21319335 T C KCNJ12 Silent p.H227H 0.24 TCGA-55-7911-01 17 26888618 26888618 C T PIGS Silent p.R166R 0.10 TCGA-55-7911-01 17 45219643 45219643 T C CDC27 Missense_Mutation p.T450A 0.09 tolerated(0.18) benign(0.001) TCGA-55-7911-01 17 46627923 46627923 C A HOXB3 Missense_Mutation p.G357C 0.47 deleterious(0.02) probably_damaging(0.942) TCGA-55-7911-01 17 48940956 48940956 G A TOB1 Silent p.P141P 0.22 TCGA-55-7911-01 17 56082810 56082810 G A SRSF1 Missense_Mutation p.P235L 0.26 deleterious(0) unknown(0) TCGA-55-7911-01 17 71281643 71281643 C A CDC42EP4 Missense_Mutation p.A333S 0.24 tolerated(0.27) benign(0.015) TCGA-55-7911-01 17 7578498 7578498 C A TP53 Missense_Mutation p.Q144H 0.22 deleterious(0.04) probably_damaging(0.997) TCGA-55-7911-01 17 80543836 80543836 G T FOXK2 Missense_Mutation p.A446S 0.27 tolerated(0.4) benign(0.011) TCGA-55-7911-01 18 22804575 22804575 C A ZNF521 Missense_Mutation p.A1103S 0.21 tolerated(1) benign(0.044) TCGA-55-7911-01 18 29039083 29039083 C A DSG3 Missense_Mutation p.P154T 0.10 deleterious(0.03) benign(0.118) TCGA-55-7911-01 18 30804870 30804870 C - CCDC178 Frame_Shift_Del p.A563Hfs*8 0.12 TCGA-55-7911-01 18 31709851 31709851 T - NOL4 Frame_Shift_Del p.K133Rfs*19 0.17 TCGA-55-7911-01 18 34289064 34289064 C - FHOD3 Frame_Shift_Del p.D575Ifs*27 0.17 TCGA-55-7911-01 19 21607362 21607362 G T ZNF493 Missense_Mutation p.C634F 0.06 deleterious(0) probably_damaging(0.999) TCGA-55-7911-01 19 37117917 37117917 C A ZNF382 Missense_Mutation p.T373K 0.11 deleterious(0.02) benign(0.413) TCGA-55-7911-01 19 41779913 41779913 A C HNRNPUL1 Missense_Mutation p.E200A 0.16 deleterious(0.04) unknown(0) TCGA-55-7911-01 19 44470922 44470922 A T ZNF221 Missense_Mutation p.K423I 0.22 tolerated(0.07) possibly_damaging(0.838) TCGA-55-7911-01 19 53959847 53959847 G - ZNF761 RNA 0.11 TCGA-55-7911-01 19 55713588 55713588 T A PTPRH Missense_Mutation p.Y330F 0.15 probably_damaging(0.914) TCGA-55-7911-01 19 57746650 57746650 G T AURKC Silent p.G265G 0.26 TCGA-55-7911-01 19 58102405 58102405 G T ZIK1 Missense_Mutation p.C409F 0.14 deleterious(0) probably_damaging(1) TCGA-55-7911-01 1 102270424 102270424 G A OLFM3 Silent p.Y249Y 0.05 TCGA-55-7911-01 1 10238772 10238772 T C UBE4B Missense_Mutation p.I1199T 0.25 tolerated(0.31) benign(0.089) TCGA-55-7911-01 1 111724837 111724837 T C CEPT1 Missense_Mutation p.I248T 0.06 tolerated(0.31) benign(0.272) TCGA-55-7911-01 1 156646857 156646857 A T NES Missense_Mutation p.V67D 0.36 deleterious(0) probably_damaging(0.988) TCGA-55-7911-01 1 156814505 156814505 C A INSRR Missense_Mutation p.L856F 0.42 tolerated(0.66) possibly_damaging(0.46) TCGA-55-7911-01 1 158324263 158324263 A T CD1E Missense_Mutation p.H52L 0.36 deleterious(0.01) benign(0.044) TCGA-55-7911-01 1 158390131 158390131 G C OR10K2 Missense_Mutation p.H176D 0.08 deleterious(0) probably_damaging(0.988) TCGA-55-7911-01 1 158747012 158747012 G A OR6N2 Silent p.T138T 0.32 TCGA-55-7911-01 1 171077352 171077352 C G FMO3 Missense_Mutation p.T206R 0.25 tolerated(0.08) possibly_damaging(0.616) TCGA-55-7911-01 1 17593303 17593303 T G PADI3 Missense_Mutation p.N166K 0.19 tolerated(0.31) possibly_damaging(0.493) TCGA-55-7911-01 1 182636035 182636035 G C RGS8 Missense_Mutation p.L52V 0.05 tolerated(0.5) possibly_damaging(0.633) TCGA-55-7911-01 1 183221856 183221856 C T NMNAT2 Missense_Mutation p.G282S 0.36 tolerated(1) probably_damaging(0.998) TCGA-55-7911-01 1 202418211 202418211 C T PPP1R12B Missense_Mutation p.L588F 0.09 tolerated(0.72) benign(0.069) TCGA-55-7911-01 1 202464470 202464470 C T PPP1R12B Missense_Mutation p.T732M 0.08 deleterious(0) benign(0.391) TCGA-55-7911-01 1 205312401 205312401 C T KLHDC8A Missense_Mutation p.S111N 0.06 tolerated(0.27) benign(0.005) TCGA-55-7911-01 1 20992805 20992805 A T KIF17 Missense_Mutation p.L938H 0.25 tolerated(0.1) possibly_damaging(0.907) TCGA-55-7911-01 1 209965758 209965758 G C IRF6 Missense_Mutation p.P175A 0.08 deleterious(0.04) benign(0.05) TCGA-55-7911-01 1 215972392 215972392 G T USH2A Missense_Mutation p.P3272Q 0.35 probably_damaging(1) TCGA-55-7911-01 1 222828121 222828121 G T MIA3 Missense_Mutation p.E1531D 0.35 deleterious(0.04) probably_damaging(0.951) TCGA-55-7911-01 1 231298752 231298752 C G TRIM67 Missense_Mutation p.L13V 0.12 deleterious(0.02) possibly_damaging(0.484) TCGA-55-7911-01 1 24407901 24407901 C A MYOM3 Missense_Mutation p.A776S 0.08 deleterious(0) probably_damaging(0.944) TCGA-55-7911-01 1 248637204 248637204 G T OR2T3 Nonsense_Mutation p.E185* 0.11 TCGA-55-7911-01 1 38155304 38155304 G T C1orf109 Silent p.I83I 0.05 TCGA-55-7911-01 1 47685506 47685506 G T TAL1 Silent p.S294S 0.07 TCGA-55-7911-01 1 7792638 7792638 G T CAMTA1 Silent p.G1015G 0.27 TCGA-55-7911-01 1 7913047 7913047 G A UTS2 Intron 0.13 TCGA-55-7911-01 1 79387384 79387384 G T ELTD1 Missense_Mutation p.L391M 0.21 deleterious(0.05) benign(0.13) TCGA-55-7911-01 20 31644416 31644416 C A BPIFB3 Silent p.R65R 0.26 TCGA-55-7911-01 20 37597733 37597733 G A DHX35 Missense_Mutation p.G17E 0.13 deleterious(0.05) benign(0.206) TCGA-55-7911-01 21 11047529 11047529 A T BAGE2 RNA 0.05 TCGA-55-7911-01 21 19698813 19698813 G T TMPRSS15 Missense_Mutation p.N619K 0.26 deleterious(0) possibly_damaging(0.564) TCGA-55-7911-01 21 27327992 27327992 G A APP Silent p.F512F 0.38 TCGA-55-7911-01 21 39086663 39086663 G T KCNJ6 Missense_Mutation p.T266K 0.30 tolerated(0.13) probably_damaging(0.957) TCGA-55-7911-01 22 21140420 21140420 G T SERPIND1 Missense_Mutation p.R431M 0.07 deleterious(0) benign(0.22) TCGA-55-7911-01 22 23237863 23237863 G T IGLL5 Nonsense_Mutation p.E212* 0.12 TCGA-55-7911-01 22 26294422 26294422 A G MYO18B Missense_Mutation p.Q1606R 0.08 deleterious(0.01) probably_damaging(0.984) TCGA-55-7911-01 22 35817363 35817363 C T MCM5 Nonsense_Mutation p.Q629* 0.20 TCGA-55-7911-01 2 110881617 110881625 GGACTTCAG - NPHP1 In_Frame_Del p.L649_S651del 0.17 TCGA-55-7911-01 2 131487520 131487520 C T GPR148 Missense_Mutation p.H266Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-55-7911-01 2 132021446 132021446 C T POTEE Silent p.T806T 0.23 TCGA-55-7911-01 2 133539542 133539542 T A NCKAP5 Missense_Mutation p.K1614N 0.28 deleterious(0.02) benign(0.086) TCGA-55-7911-01 2 133543098 133543098 C A NCKAP5 Missense_Mutation p.C429F 0.19 deleterious(0) probably_damaging(1) TCGA-55-7911-01 2 135107399 135107399 C T MGAT5 Missense_Mutation p.S379L 0.11 deleterious(0) probably_damaging(0.977) TCGA-55-7911-01 2 15614420 15614420 G C NBAS Missense_Mutation p.S457C 0.22 tolerated(0.13) possibly_damaging(0.784) TCGA-55-7911-01 2 15760486 15760486 G T DDX1 Missense_Mutation p.R454I 0.20 tolerated(0.13) benign(0.003) TCGA-55-7911-01 2 158412698 158412698 C T ACVR1C Missense_Mutation p.V151M 0.21 tolerated(0.37) benign(0.233) TCGA-55-7911-01 2 165947802 165947802 G C SCN3A Missense_Mutation p.R1621G 0.21 deleterious(0.01) probably_damaging(0.916) TCGA-55-7911-01 2 175614782 175614782 C G CHRNA1 Missense_Mutation p.M323I 0.13 deleterious(0.05) benign(0.124) TCGA-55-7911-01 2 176957919 176957919 G C HOXD13 Missense_Mutation p.A101P 0.37 tolerated(0.07) possibly_damaging(0.887) TCGA-55-7911-01 2 178081586 178081586 A T HNRNPA3 Splice_Site p.X247_splice 0.22 TCGA-55-7911-01 2 182363400 182363400 C A ITGA4 Missense_Mutation p.P531T 0.23 tolerated(0.38) benign(0.034) TCGA-55-7911-01 2 197863664 197863664 T G ANKRD44 Missense_Mutation p.M853L 0.26 tolerated(0.21) benign(0.014) TCGA-55-7911-01 2 201857028 201857028 T A FAM126B Silent p.L269L 0.17 TCGA-55-7911-01 2 209113112 209113112 C A IDH1 Missense_Mutation p.R132L 0.17 deleterious_low_confidence(0) possibly_damaging(0.833) TCGA-55-7911-01 2 215851332 215851332 A C ABCA12 Missense_Mutation p.L1366R 0.12 deleterious(0) probably_damaging(0.993) TCGA-55-7911-01 2 218999803 218999803 C A CXCR2 Silent p.A93A 0.19 TCGA-55-7911-01 2 227945211 227945211 C A COL4A4 Missense_Mutation p.G584V 0.21 probably_damaging(0.972) TCGA-55-7911-01 2 233405391 233405391 T A CHRNG Missense_Mutation p.V107E 0.43 deleterious(0) possibly_damaging(0.795) TCGA-55-7911-01 2 241685265 241685265 C A KIF1A Silent p.L1088L 0.32 TCGA-55-7911-01 2 26712109 26712109 T C OTOF Missense_Mutation p.M339V 0.21 tolerated(0.59) benign(0.039) TCGA-55-7911-01 2 27456987 27456987 C T CAD Missense_Mutation p.P1171S 0.18 deleterious(0.02) possibly_damaging(0.901) TCGA-55-7911-01 2 27659970 27659970 G T NRBP1 Nonsense_Mutation p.E268* 0.20 TCGA-55-7911-01 2 42488428 42488428 C T EML4 Missense_Mutation p.T169I 0.10 tolerated(0.18) benign(0.001) TCGA-55-7911-01 2 44204415 44204415 C A LRPPRC Missense_Mutation p.G157V 0.26 deleterious(0) probably_damaging(1) TCGA-55-7911-01 2 61516014 61516014 T G USP34 Splice_Site p.X1517_splice 0.21 TCGA-55-7911-01 2 65571931 65571931 C A SPRED2 Silent p.G42G 0.30 TCGA-55-7911-01 2 79313983 79313983 G T REG1B Nonsense_Mutation p.Y46* 0.26 TCGA-55-7911-01 2 80530209 80530209 C A LRRTM1 Missense_Mutation p.A246S 0.16 tolerated(0.65) benign(0.024) TCGA-55-7911-01 2 86258460 86258460 C A POLR1A Missense_Mutation p.W1524L 0.30 deleterious(0) benign(0.077) TCGA-55-7911-01 3 10381930 10381930 C A ATP2B2 Missense_Mutation p.G1078V 0.15 deleterious(0) possibly_damaging(0.853) TCGA-55-7911-01 3 121591442 121591442 T A EAF2 Missense_Mutation p.D181E 0.16 tolerated(0.27) possibly_damaging(0.448) TCGA-55-7911-01 3 125652457 125652457 C T ALG1L Missense_Mutation p.E21K 0.12 tolerated(0.38) benign(0.013) TCGA-55-7911-01 3 125854472 125854472 C A ALDH1L1 Missense_Mutation p.D470Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-55-7911-01 3 12623307 12623308 - A MKRN2 Frame_Shift_Ins p.A326Sfs*3 0.15 TCGA-55-7911-01 3 126290865 126290865 A C TXNRD3NB 3'UTR 0.12 TCGA-55-7911-01 3 1339578 1339579 - T CNTN6 Frame_Shift_Ins p.M222Ifs*5 0.20 TCGA-55-7911-01 3 145938688 145938688 T A PLSCR4 Missense_Mutation p.Q11L 0.21 tolerated(0.09) benign(0.002) TCGA-55-7911-01 3 147128206 147128206 C T ZIC1 Missense_Mutation p.R103C 0.11 deleterious(0.01) probably_damaging(0.986) TCGA-55-7911-01 3 150917131 150917131 C G GPR171 Missense_Mutation p.E15Q 0.16 tolerated(0.21) benign(0.116) TCGA-55-7911-01 3 15762612 15762612 C T ANKRD28 Missense_Mutation p.G239E 0.08 deleterious(0) probably_damaging(0.998) TCGA-55-7911-01 3 164754207 164754207 C A SI Missense_Mutation p.D829Y 0.19 deleterious(0) benign(0.008) TCGA-55-7911-01 3 167240120 167240120 T C WDR49 Silent p.K567K 0.10 TCGA-55-7911-01 3 186572221 186572221 C T ADIPOQ Missense_Mutation p.P155S 0.11 tolerated(0.18) probably_damaging(0.957) TCGA-55-7911-01 3 42917206 42917206 G T CYP8B1 Missense_Mutation p.L35M 0.17 deleterious(0) probably_damaging(1) TCGA-55-7911-01 3 50313211 50313211 C T LSMEM2 5'Flank 0.18 TCGA-55-7911-01 3 52557091 52557091 T C STAB1 Missense_Mutation p.C2321R 0.08 deleterious(0) probably_damaging(0.999) TCGA-55-7911-01 4 123175486 123175486 C G KIAA1109 Missense_Mutation p.T2020R 0.19 benign(0.024) TCGA-55-7911-01 4 123329128 123329128 G T ADAD1 Missense_Mutation p.D264Y 0.15 tolerated(0.15) benign(0.03) TCGA-55-7911-01 4 134073431 134073431 A G PCDH10 Silent p.L712L 0.13 TCGA-55-7911-01 4 142640569 142640569 C T IL15 5'UTR 0.10 TCGA-55-7911-01 4 156135716 156135716 G T NPY2R Missense_Mutation p.G209C 0.18 deleterious(0) probably_damaging(0.95) TCGA-55-7911-01 4 20469408 20469408 A T SLIT2 Silent p.P143P 0.15 TCGA-55-7911-01 4 57215650 57215650 T A AASDH Missense_Mutation p.H756L 0.14 tolerated(0.61) benign(0.007) TCGA-55-7911-01 4 57897425 57897425 G T IGFBP7 3'UTR 0.18 TCGA-55-7911-01 4 66242723 66242723 G C EPHA5 Missense_Mutation p.L617V 0.11 tolerated(0.25) benign(0.013) TCGA-55-7911-01 4 66242724 66242724 G T EPHA5 Missense_Mutation p.S616R 0.12 tolerated(0.53) benign(0.021) TCGA-55-7911-01 4 86491764 86491764 G T ARHGAP24 Missense_Mutation p.G24W 0.12 deleterious(0) probably_damaging(1) TCGA-55-7911-01 5 118324208 118324208 G A DTWD2 5'UTR 0.21 TCGA-55-7911-01 5 136324183 136324183 T A SPOCK1 Missense_Mutation p.N286Y 0.05 deleterious(0) probably_damaging(1) TCGA-55-7911-01 5 140023455 140023455 C A TMCO6 Missense_Mutation p.R337S 0.42 deleterious(0) possibly_damaging(0.878) TCGA-55-7911-01 5 140752183 140752183 C A PCDHGB3 Missense_Mutation p.P741H 0.25 deleterious(0.01) benign(0.049) TCGA-55-7911-01 5 145895474 145895474 C A GPR151 Missense_Mutation p.G68V 0.07 deleterious(0) probably_damaging(0.911) TCGA-55-7911-01 5 153783767 153783767 C G GALNT10 Missense_Mutation p.A387G 0.56 tolerated(0.68) probably_damaging(0.981) TCGA-55-7911-01 5 168233578 168233578 G T SLIT3 Missense_Mutation p.P270T 0.07 tolerated(0.2) benign(0.092) TCGA-55-7911-01 5 23522423 23522423 G A PRDM9 Silent p.K173K 0.32 TCGA-55-7911-01 5 31267710 31267710 A C CDH6 Missense_Mutation p.S44R 0.42 tolerated(0.39) benign(0.034) TCGA-55-7911-01 5 43535667 43535667 C G PAIP1 Missense_Mutation p.E350Q 0.39 deleterious(0.04) possibly_damaging(0.761) TCGA-55-7911-01 5 54649077 54649077 G T SKIV2L2 Missense_Mutation p.D505Y 0.34 deleterious(0) probably_damaging(1) TCGA-55-7911-01 5 6374488 6374488 C A MED10 Missense_Mutation p.E86D 0.42 tolerated(0.09) probably_damaging(0.994) TCGA-55-7911-01 6 152685991 152685991 C A SYNE1 Missense_Mutation p.R3379L 0.24 benign(0.194) TCGA-55-7911-01 6 160464274 160464277 AGGC - IGF2R Frame_Shift_Del p.G526Rfs*30 0.11 TCGA-55-7911-01 6 165715076 165715076 G T C6orf118 Missense_Mutation p.H245Q 0.17 deleterious(0.02) probably_damaging(0.988) TCGA-55-7911-01 6 28269741 28269741 A T PGBD1 Missense_Mutation p.I704L 0.12 deleterious(0.01) probably_damaging(0.987) TCGA-55-7911-01 6 3083425 3083425 C T RIPK1 Missense_Mutation p.T189I 0.14 deleterious(0) probably_damaging(0.998) TCGA-55-7911-01 6 31848493 31848493 C T EHMT2 Missense_Mutation p.A1137T 0.06 deleterious(0) probably_damaging(0.999) TCGA-55-7911-01 6 34614502 34614502 C G C6orf106 Silent p.V129V 0.19 TCGA-55-7911-01 6 4037669 4037669 G C PRPF4B Missense_Mutation p.R426T 0.08 tolerated_low_confidence(0.09) possibly_damaging(0.728) TCGA-55-7911-01 6 55300442 55300442 G A HMGCLL1 3'UTR 0.12 TCGA-55-7911-01 6 99374724 99374724 G A FBXL4 Silent p.L47L 0.21 TCGA-55-7911-01 7 100481745 100481745 G C SRRT Silent p.R214R 0.17 TCGA-55-7911-01 7 127222755 127222755 C T GCC1 Silent p.Q547Q 0.13 TCGA-55-7911-01 7 129855958 129855958 G T SSMEM1 Missense_Mutation p.R128L 0.18 deleterious(0.01) benign(0.433) TCGA-55-7911-01 7 131887528 131887528 G A PLXNA4 Silent p.F821F 0.21 TCGA-55-7911-01 7 142480037 142480037 T A PRSS3P2 RNA 0.15 TCGA-55-7911-01 7 142510289 142510289 T C TRBV30 Missense_Mutation p.Y106C 0.19 deleterious(0) probably_damaging(1) TCGA-55-7911-01 7 2985479 2985479 G T CARD11 Missense_Mutation p.P111H 0.13 deleterious(0) probably_damaging(1) TCGA-55-7911-01 7 31682641 31682641 G T CCDC129 Missense_Mutation p.V579F 0.21 tolerated(0.15) possibly_damaging(0.451) TCGA-55-7911-01 7 83739879 83739879 T A SEMA3A Silent p.V120V 0.18 TCGA-55-7911-01 7 96639143 96639143 T C DLX6 Silent p.F222F 0.15 TCGA-55-7911-01 8 22865579 22865579 G A RHOBTB2 Missense_Mutation p.M547I 0.13 deleterious(0.01) possibly_damaging(0.792) TCGA-55-7911-01 8 55538040 55538040 G T RP1 Missense_Mutation p.R533I 0.12 deleterious(0.04) possibly_damaging(0.646) TCGA-55-7911-01 8 70744391 70744391 C A SLCO5A1 Missense_Mutation p.C173F 0.15 deleterious(0) possibly_damaging(0.593) TCGA-55-7911-01 8 72756423 72756423 C T MSC 5'UTR 0.14 TCGA-55-7911-01 8 72975766 72975766 C G TRPA1 Missense_Mutation p.G198A 0.31 deleterious(0.04) possibly_damaging(0.619) TCGA-55-7911-01 8 77761908 77761908 A G ZFHX4 Missense_Mutation p.H1269R 0.17 benign(0.402) TCGA-55-7911-01 9 131390214 131390214 C G SPTAN1 Missense_Mutation p.L2234V 0.07 tolerated(0.18) benign(0.013) TCGA-55-7911-01 9 131484063 131484063 G T ZDHHC12 Missense_Mutation p.R117S 0.20 deleterious(0.04) benign(0.107) TCGA-55-7911-01 9 134308112 134308112 C G PRRC2B Missense_Mutation p.P75R 0.06 deleterious(0) probably_damaging(1) TCGA-55-7911-01 9 138651666 138651666 C G KCNT1 Silent p.V332V 0.16 TCGA-55-7911-01 9 20929593 20929593 C G FOCAD Silent p.L1105L 0.08 TCGA-55-7911-01 9 33053211 33053211 G C SMU1 Silent p.V400V 0.15 TCGA-55-7911-01 9 37735585 37735585 G A FRMPD1 Missense_Mutation p.G419R 0.14 deleterious(0) probably_damaging(1) TCGA-55-7911-01 9 6587243 6587243 A C GLDC Missense_Mutation p.V583G 0.15 deleterious(0) probably_damaging(0.996) TCGA-55-7911-01 9 84208062 84208062 C T TLE1 Missense_Mutation p.V487M 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-55-7911-01 9 90501513 90501513 A G SPATA31E1 Missense_Mutation p.D704G 0.29 tolerated(1) benign(0) TCGA-55-7911-01 X 100911668 100911668 C A ARMCX2 Nonsense_Mutation p.E303* 0.18 TCGA-55-7911-01 X 102005252 102005252 C A BHLHB9 Silent p.A443A 0.10 TCGA-55-7911-01 X 102968776 102968776 C A TMEM31 Silent p.I119I 0.16 TCGA-55-7911-01 X 108641894 108641894 G T GUCY2F Missense_Mutation p.A720D 0.17 tolerated(1) possibly_damaging(0.475) TCGA-55-7911-01 X 111698533 111698533 C T ZCCHC16 Nonsense_Mutation p.Q193* 0.20 TCGA-55-7911-01 X 118752799 118752799 G T SEPT6 Intron 0.17 TCGA-55-7911-01 X 118752800 118752800 G T SEPT6 Intron 0.14 TCGA-55-7911-01 X 130412049 130412049 G T IGSF1 Missense_Mutation p.L706I 0.20 tolerated(1) benign(0.002) TCGA-55-7911-01 X 13337344 13337344 C A ATXN3L Missense_Mutation p.R237L 0.15 tolerated(0.17) benign(0.157) TCGA-55-7911-01 X 134156229 134156229 C T FAM127C Silent p.E87E 0.19 TCGA-55-7911-01 X 134166554 134166554 G T FAM127A Silent p.T47T 0.20 TCGA-55-7911-01 X 152772061 152772061 C T BGN Missense_Mutation p.R214C 0.09 deleterious(0) probably_damaging(1) TCGA-55-7911-01 X 153128302 153128302 C A L1CAM Missense_Mutation p.G1197V 0.14 tolerated(0.08) probably_damaging(1) TCGA-55-7911-01 X 153197846 153197846 C T NAA10 Silent p.Q88Q 0.08 TCGA-55-7911-01 X 153220568 153220568 G A HCFC1 Silent p.A1094A 0.23 TCGA-55-7911-01 X 153551630 153551630 C A TKTL1 Missense_Mutation p.P422T 0.21 deleterious(0) probably_damaging(1) TCGA-55-7911-01 X 154158272 154158272 G T F8 Missense_Mutation p.P1265T 0.16 deleterious(0.04) benign(0.035) TCGA-55-7911-01 X 17818601 17818601 G T RAI2 Silent p.S510S 0.16 TCGA-55-7911-01 X 19377734 19377734 G T PDHA1 Missense_Mutation p.G417V 0.14 deleterious(0) probably_damaging(1) TCGA-55-7911-01 X 22244559 22244559 G A PHEX Splice_Site p.X634_splice 0.10 TCGA-55-7911-01 X 2947329 2947329 G T ARSH Missense_Mutation p.R414M 0.14 tolerated(0.06) possibly_damaging(0.657) TCGA-55-7911-01 X 30260717 30260717 T A MAGEB4 Silent p.S155S 0.23 TCGA-55-7911-01 X 37026574 37026574 G A FAM47C Missense_Mutation p.A31T 0.16 tolerated(0.23) benign(0.142) TCGA-55-7911-01 X 41089775 41089775 C A USP9X Missense_Mutation p.P2501T 0.13 tolerated_low_confidence(0.44) benign(0.001) TCGA-55-7911-01 X 48457261 48457261 C A WDR13 Nonsense_Mutation p.Y66* 0.19 TCGA-55-7911-01 X 48460174 48460174 G T WDR13 Silent p.V278V 0.23 TCGA-55-7911-01 X 49955642 49955642 G T AKAP4 Silent p.A842A 0.31 TCGA-55-7911-01 X 50213148 50213148 G T DGKK RNA 0.15 TCGA-55-7911-01 X 54814955 54814955 A G ITIH6 Silent p.V248V 0.13 TCGA-55-7911-01 X 70470504 70470504 G T ZMYM3 Missense_Mutation p.P284H 0.12 deleterious_low_confidence(0.03) possibly_damaging(0.701) TCGA-55-7911-01 X 76938069 76938069 G C ATRX Silent p.G893G 0.19 TCGA-55-7911-01 X 77244097 77244097 T C ATP7A Silent p.C160C 0.14 TCGA-55-7911-01 X 79951432 79951432 T A BRWD3 Missense_Mutation p.E1042D 0.21 tolerated(0.13) benign(0.05) TCGA-55-7911-01 X 79951433 79951433 T A BRWD3 Missense_Mutation p.E1042V 0.20 deleterious(0.02) possibly_damaging(0.829) TCGA-55-7911-01 X 86868949 86868949 C A KLHL4 Missense_Mutation p.H164Q 0.17 deleterious(0) probably_damaging(1) TCGA-55-7913-01 10 102586788 102586788 G T PAX2 Silent p.P371P 0.24 TCGA-55-7913-01 10 102824275 102824275 G C KAZALD1 Missense_Mutation p.Q230H 0.11 deleterious(0.01) possibly_damaging(0.665) TCGA-55-7913-01 10 103869729 103869729 G T LDB1 Missense_Mutation p.F199L 0.20 tolerated(0.22) probably_damaging(0.977) TCGA-55-7913-01 10 105133151 105133151 G C TAF5 Missense_Mutation p.S199T 0.13 tolerated(0.1) benign(0.008) TCGA-55-7913-01 10 124377677 124377677 T A DMBT1 Missense_Mutation p.L1550Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-55-7913-01 10 25314183 25314183 G T THNSL1 Missense_Mutation p.Q677H 0.16 tolerated(0.12) possibly_damaging(0.681) TCGA-55-7913-01 10 27538825 27538825 G C RP11-85G18.6 Intron 0.14 TCGA-55-7913-01 10 34408645 34408645 C G PARD3 Missense_Mutation p.Q1191H 0.24 tolerated_low_confidence(0.11) possibly_damaging(0.786) TCGA-55-7913-01 10 45954695 45954695 C A MARCH8 Silent p.T148T 0.18 TCGA-55-7913-01 10 50530877 50530877 C T C10orf71 Missense_Mutation p.A96V 0.06 deleterious(0) probably_damaging(1) TCGA-55-7913-01 10 50902679 50902679 C A C10orf53 Intron 0.19 TCGA-55-7913-01 10 50953988 50953988 G T OGDHL Silent p.S444S 0.33 TCGA-55-7913-01 10 52610559 52610559 T C A1CF 5'UTR 0.20 TCGA-55-7913-01 10 53822313 53822313 A T PRKG1 Missense_Mutation p.E286V 0.33 tolerated(0.05) benign(0.036) TCGA-55-7913-01 10 5498572 5498572 G A NET1 Missense_Mutation p.R469H 0.36 deleterious(0.02) probably_damaging(0.987) TCGA-55-7913-01 10 60273081 60273081 G T BICC1 Missense_Mutation p.A60S 0.24 tolerated(0.3) benign(0.002) TCGA-55-7913-01 10 73122086 73122086 G T SLC29A3 Silent p.V383V 0.29 TCGA-55-7913-01 10 75860706 75860706 G A VCL Missense_Mutation p.V625I 0.22 tolerated(0.52) benign(0.307) TCGA-55-7913-01 10 95115430 95115430 T A MYOF Missense_Mutation p.T1120S 0.28 tolerated(0.74) benign(0.004) TCGA-55-7913-01 11 105950307 105950307 G A AASDHPPT Silent p.S99S 0.20 TCGA-55-7913-01 11 121000789 121000789 G T TECTA Missense_Mutation p.R937L 0.43 deleterious(0.02) possibly_damaging(0.541) TCGA-55-7913-01 11 124189708 124189708 G T OR8D2 Missense_Mutation p.P129Q 0.53 deleterious(0) possibly_damaging(0.889) TCGA-55-7913-01 11 129812438 129812438 C A PRDM10 Missense_Mutation p.W283C 0.30 deleterious(0) probably_damaging(1) TCGA-55-7913-01 11 132812837 132812837 C T OPCML Missense_Mutation p.E51K 0.08 deleterious(0.04) benign(0.217) TCGA-55-7913-01 11 18252932 18252932 C A SAA4 3'UTR 0.26 TCGA-55-7913-01 11 18955528 18955528 G T MRGPRX1 Missense_Mutation p.N268K 0.50 deleterious(0.01) probably_damaging(0.968) TCGA-55-7913-01 11 27407004 27407004 G T LGR4 Missense_Mutation p.A138D 0.33 deleterious(0) probably_damaging(0.986) TCGA-55-7913-01 11 40136434 40136434 C G LRRC4C Missense_Mutation p.R470P 0.55 tolerated(0.31) benign(0.004) TCGA-55-7913-01 11 4123267 4123267 A T RRM1 Missense_Mutation p.I22F 0.46 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-55-7913-01 11 46897370 46897370 G A LRP4 Silent p.A1228A 0.10 TCGA-55-7913-01 11 55419098 55419098 C - OR4S2 Frame_Shift_Del p.H241Tfs*40 0.27 TCGA-55-7913-01 11 56020552 56020552 A C OR5T3 Missense_Mutation p.S293R 0.14 deleterious(0.02) benign(0.248) TCGA-55-7913-01 11 58723476 58723476 C T GLYATL1 Silent p.Y326Y 0.36 TCGA-55-7913-01 11 62380736 62380736 C T ROM1 5'UTR 0.50 TCGA-55-7913-01 11 63721935 63721935 G T NAA40 Missense_Mutation p.G233V 0.34 deleterious_low_confidence(0.01) unknown(0) TCGA-55-7913-01 11 6898406 6898406 C T OR10A4 Silent p.N176N 0.29 TCGA-55-7913-01 11 75154321 75154321 C T GDPD5 Missense_Mutation p.V270M 0.18 deleterious(0) probably_damaging(1) TCGA-55-7913-01 11 77301178 77301178 C T AQP11 Silent p.F47F 0.19 TCGA-55-7913-01 11 82879626 82879626 C T PCF11 Missense_Mutation p.P750L 0.15 deleterious(0) possibly_damaging(0.766) TCGA-55-7913-01 11 92569869 92569869 G T FAT3 Silent p.R3408R 0.43 TCGA-55-7913-01 12 104129284 104129284 C A STAB2 Missense_Mutation p.L1826I 0.39 deleterious(0) probably_damaging(0.999) TCGA-55-7913-01 12 111321993 111321993 C A CCDC63 Missense_Mutation p.T338K 0.33 tolerated(0.14) benign(0.296) TCGA-55-7913-01 12 113328777 113328777 G T RPH3A Missense_Mutation p.A582S 0.33 tolerated(0.39) benign(0.344) TCGA-55-7913-01 12 117660635 117660635 C A NOS1 Missense_Mutation p.G1321V 0.32 deleterious(0) probably_damaging(1) TCGA-55-7913-01 12 1969368 1969368 C A CACNA2D4 Missense_Mutation p.R628L 0.14 deleterious(0) probably_damaging(0.989) TCGA-55-7913-01 12 25261754 25261754 T A CASC1 Missense_Mutation p.R633W 0.34 deleterious(0.04) possibly_damaging(0.831) TCGA-55-7913-01 12 27951076 27951076 C G KLHL42 Missense_Mutation p.L499V 0.09 deleterious(0) probably_damaging(0.994) TCGA-55-7913-01 12 2797691 2797691 C A CACNA1C Missense_Mutation p.P2003T 0.25 deleterious_low_confidence(0.01) benign(0.018) TCGA-55-7913-01 12 47173419 47173419 G T SLC38A4 Missense_Mutation p.T231N 0.42 tolerated(0.07) benign(0.014) TCGA-55-7913-01 12 51072653 51072653 A T DIP2B Missense_Mutation p.T370S 0.54 tolerated(0.06) probably_damaging(0.924) TCGA-55-7913-01 12 56236563 56236563 C A MMP19 Missense_Mutation p.G18C 0.33 tolerated(0.12) benign(0.02) TCGA-55-7913-01 12 6121271 6121271 C T VWF Silent p.E1882E 0.13 TCGA-55-7913-01 12 6344399 6344399 T - CD9 Frame_Shift_Del p.K119Rfs*14 0.13 TCGA-55-7913-01 12 6697035 6697035 C T CHD4 Silent p.E1182E 0.20 TCGA-55-7913-01 12 70070788 70070788 C G BEST3 Missense_Mutation p.D259H 0.38 deleterious(0.01) probably_damaging(0.922) TCGA-55-7913-01 12 70931986 70931986 G T PTPRB Silent p.S1965S 0.28 TCGA-55-7913-01 12 78225484 78225484 G A NAV3 Silent p.K81K 0.39 TCGA-55-7913-01 12 80749685 80749685 G A OTOGL Missense_Mutation p.M1912I 0.47 tolerated(0.47) benign(0) TCGA-55-7913-01 12 85623399 85623399 G A LRRIQ1 Missense_Mutation p.E1643K 0.29 deleterious(0.02) possibly_damaging(0.907) TCGA-55-7913-01 13 101714424 101714424 C A NALCN Nonsense_Mutation p.E1551* 0.19 TCGA-55-7913-01 13 103528279 103528279 T G ERCC5 3'UTR 0.23 TCGA-55-7913-01 13 110828768 110828768 T A COL4A1 Intron 0.12 TCGA-55-7913-01 13 114288331 114288331 G T TFDP1 Nonsense_Mutation p.E201* 0.15 TCGA-55-7913-01 13 25265213 25265213 C A ATP12A Missense_Mutation p.P304H 0.20 deleterious(0) probably_damaging(0.998) TCGA-55-7913-01 13 26104202 26104202 C A ATP8A2 Missense_Mutation p.A96D 0.11 deleterious(0) probably_damaging(0.984) TCGA-55-7913-01 13 33016632 33016632 T C N4BP2L2 Missense_Mutation p.D681G 0.25 deleterious(0.03) benign(0.21) TCGA-55-7913-01 14 106725300 106725300 C G IGHV3-23 Missense_Mutation p.K84N 0.08 deleterious_low_confidence(0.02) probably_damaging(0.969) TCGA-55-7913-01 14 20924924 20924924 C T APEX1 Missense_Mutation p.S115F 0.15 tolerated(0.13) benign(0.189) TCGA-55-7913-01 14 23884905 23884905 C A MYH7 Missense_Mutation p.R1697L 0.20 deleterious(0) probably_damaging(0.984) TCGA-55-7913-01 14 35002673 35002673 T A EAPP Missense_Mutation p.D110V 0.17 deleterious(0) probably_damaging(0.948) TCGA-55-7913-01 14 65263397 65263397 C A SPTB Nonsense_Mutation p.E407* 0.27 TCGA-55-7913-01 14 74726388 74726388 C A VSX2 Silent p.L221L 0.15 TCGA-55-7913-01 14 75409331 75409331 C A PGF 3'UTR 0.36 TCGA-55-7913-01 14 80669421 80669421 T A DIO2 Nonsense_Mutation p.K181* 0.27 TCGA-55-7913-01 14 86088911 86088911 G T FLRT2 Missense_Mutation p.R351S 0.13 deleterious(0.01) benign(0.206) TCGA-55-7913-01 14 88895785 88895785 G T SPATA7 Missense_Mutation p.A336S 0.09 tolerated(0.32) benign(0.067) TCGA-55-7913-01 14 90650633 90650633 G T KCNK13 Silent p.L171L 0.34 TCGA-55-7913-01 14 92900307 92900307 G C SLC24A4 Missense_Mutation p.G98A 0.11 deleterious(0) probably_damaging(0.996) TCGA-55-7913-01 15 25456807 25456807 C A SNORD115-22 3'Flank 0.35 TCGA-55-7913-01 15 31359277 31359277 C T TRPM1 Missense_Mutation p.V220I 0.08 tolerated(1) benign(0.002) TCGA-55-7913-01 15 60298113 60298113 C G FOXB1 Silent p.S317S 0.17 TCGA-55-7913-01 15 72499184 72499184 C A PKM Missense_Mutation p.R342L 0.11 deleterious(0.01) probably_damaging(0.953) TCGA-55-7913-01 15 79083559 79083559 C A ADAMTS7 Missense_Mutation p.G276C 0.09 deleterious(0) probably_damaging(1) TCGA-55-7913-01 15 83224664 83224664 G T CPEB1 Missense_Mutation p.P272H 0.15 deleterious(0.01) probably_damaging(0.967) TCGA-55-7913-01 15 90903594 90903594 G T ZNF774 Missense_Mutation p.R177S 0.27 deleterious(0) probably_damaging(0.998) TCGA-55-7913-01 16 1306326 1306326 G A TPSD1 Silent p.A15A 0.07 TCGA-55-7913-01 16 22926539 22926539 G A HS3ST2 Missense_Mutation p.V254M 0.19 deleterious(0) possibly_damaging(0.75) TCGA-55-7913-01 16 2336748 2336748 G A ABCA3 Silent p.S1075S 0.11 TCGA-55-7913-01 16 28124239 28124239 G A XPO6 Nonsense_Mutation p.R713* 0.21 TCGA-55-7913-01 16 3639305 3639305 C A SLX4 Missense_Mutation p.R1445L 0.12 deleterious(0.02) benign(0.117) TCGA-55-7913-01 16 49669770 49669770 C A ZNF423 Missense_Mutation p.R1098L 0.27 tolerated(0.36) benign(0.002) TCGA-55-7913-01 16 5125505 5125505 C - ALG1 Frame_Shift_Del p.N171Tfs*21 0.14 TCGA-55-7913-01 16 57473150 57473150 C A CIAPIN1 Missense_Mutation p.R85L 0.15 deleterious(0.04) possibly_damaging(0.766) TCGA-55-7913-01 16 57735939 57735939 G T CCDC135 Missense_Mutation p.G199V 0.16 deleterious(0) probably_damaging(0.99) TCGA-55-7913-01 16 67860682 67860682 G T TSNAXIP1 Nonsense_Mutation p.E443* 0.12 TCGA-55-7913-01 16 70166118 70166118 C T PDPR Silent p.G304G 0.13 TCGA-55-7913-01 16 71663285 71663285 G A MARVELD3 Silent p.E161E 0.06 TCGA-55-7913-01 16 72146375 72146375 G T DHX38 Silent p.T1221T 0.13 TCGA-55-7913-01 16 73126796 73126796 G T HCCAT5 RNA 0.14 TCGA-55-7913-01 16 81095509 81095509 C A C16orf46 Missense_Mutation p.D149Y 0.14 deleterious(0) benign(0.007) TCGA-55-7913-01 16 84270705 84270705 G T KCNG4 Silent p.A129A 0.12 TCGA-55-7913-01 16 88052139 88052139 G T BANP Missense_Mutation p.R246L 0.25 deleterious(0.01) benign(0.115) TCGA-55-7913-01 16 88907473 88907473 T C GALNS Missense_Mutation p.I117V 0.10 deleterious(0.01) benign(0.248) TCGA-55-7913-01 16 88907478 88907478 C A GALNS Missense_Mutation p.G115V 0.10 deleterious(0) probably_damaging(0.998) TCGA-55-7913-01 17 21318971 21318971 C A KCNJ12 Missense_Mutation p.A106E 0.11 deleterious(0) probably_damaging(0.999) TCGA-55-7913-01 17 26817770 26817770 C T SLC13A2 Silent p.S189S 0.25 TCGA-55-7913-01 17 28964257 28964257 A T LRRC37BP1 RNA 0.27 TCGA-55-7913-01 17 3301408 3301408 G A OR1E1 Silent p.T99T 0.33 TCGA-55-7913-01 17 33738841 33738841 C T SLFN12 Missense_Mutation p.R418K 0.09 tolerated(0.17) benign(0.004) TCGA-55-7913-01 17 34264904 34264904 A T LYZL6 Missense_Mutation p.F52L 0.45 tolerated(0.05) possibly_damaging(0.755) TCGA-55-7913-01 17 40095231 40095231 C T TTC25 RNA 0.19 TCGA-55-7913-01 17 40825722 40825722 C T PLEKHH3 Silent p.G143G 0.16 TCGA-55-7913-01 17 41585856 41585856 A G DHX8 Missense_Mutation p.I824V 0.30 deleterious(0.04) probably_damaging(0.971) TCGA-55-7913-01 17 42992513 42992513 G A GFAP Silent p.D114D 0.18 TCGA-55-7913-01 17 44117218 44117218 G A KANSL1 Silent p.L685L 0.11 TCGA-55-7913-01 17 4576158 4576158 C A PELP1 Missense_Mutation p.G710C 0.49 probably_damaging(0.965) TCGA-55-7913-01 17 46627685 46627685 G C HOXB3 3'UTR 0.14 TCGA-55-7913-01 17 48540827 48540827 G C ACSF2 Missense_Mutation p.M320I 0.10 tolerated(0.06) possibly_damaging(0.826) TCGA-55-7913-01 17 58678246 58678246 G T PPM1D Silent p.L157L 0.12 TCGA-55-7913-01 17 72368044 72368044 C A GPR142 Missense_Mutation p.R232S 0.15 tolerated(0.09) probably_damaging(0.974) TCGA-55-7913-01 17 72588928 72588928 A G C17orf77 3'UTR 0.29 TCGA-55-7913-01 17 72858954 72858954 G C FDXR Silent p.R530R 0.13 TCGA-55-7913-01 17 73956347 73956347 C A ACOX1 Missense_Mutation p.A127S 0.19 tolerated(0.15) benign(0.05) TCGA-55-7913-01 17 74013936 74013936 T G EVPL Missense_Mutation p.T532P 0.10 deleterious(0.03) probably_damaging(0.965) TCGA-55-7913-01 17 74328468 74328468 C T PRPSAP1 Silent p.L113L 0.13 TCGA-55-7913-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.46 TCGA-55-7913-01 17 76562701 76562701 C A DNAH17 Missense_Mutation p.A522S 0.15 benign(0.002) TCGA-55-7913-01 17 7749225 7749225 C A KDM6B Missense_Mutation p.A58D 0.14 unknown(0) TCGA-55-7913-01 17 7751720 7751720 C G KDM6B Missense_Mutation p.S705C 0.21 unknown(0) TCGA-55-7913-01 17 78359384 78359384 C G RNF213 Silent p.S4834S 0.16 TCGA-55-7913-01 17 79193823 79193823 C T AZI1 Missense_Mutation p.E12K 0.29 tolerated(0.31) possibly_damaging(0.487) TCGA-55-7913-01 17 79974936 79974936 C T ASPSCR1 Missense_Mutation p.A626V 0.20 tolerated(0.31) benign(0.009) TCGA-55-7913-01 18 13071129 13071129 C T CEP192 Missense_Mutation p.P1756S 0.17 tolerated(0.23) benign(0.221) TCGA-55-7913-01 18 13742486 13742486 G T RNMT Splice_Site p.X325_splice 0.14 TCGA-55-7913-01 18 19751457 19751457 C T GATA6 Missense_Mutation p.L118F 0.20 deleterious(0) probably_damaging(0.986) TCGA-55-7913-01 18 43497769 43497769 A G EPG5 Silent p.C1038C 0.31 TCGA-55-7913-01 18 52604107 52604107 T A CCDC68 Missense_Mutation p.E143V 0.33 deleterious(0) possibly_damaging(0.807) TCGA-55-7913-01 18 52901860 52901860 G A TCF4 Missense_Mutation p.P571S 0.04 tolerated(0.83) benign(0.083) TCGA-55-7913-01 18 57103246 57103246 T C CCBE1 Missense_Mutation p.Q372R 0.32 deleterious_low_confidence(0.03) benign(0.075) TCGA-55-7913-01 18 77659456 77659456 G C KCNG2 Silent p.L347L 0.35 TCGA-55-7913-01 19 10670601 10670601 G C KRI1 Missense_Mutation p.P277R 0.34 deleterious(0.04) possibly_damaging(0.736) TCGA-55-7913-01 19 1220430 1220430 A T STK11 Nonsense_Mutation p.K175* 0.36 TCGA-55-7913-01 19 14910135 14910135 G T OR7C1 Missense_Mutation p.L272M 0.15 tolerated_low_confidence(0.12) benign(0.395) TCGA-55-7913-01 19 20027404 20027404 C T ZNF93 Silent p.L56L 0.16 TCGA-55-7913-01 19 291389 291389 C A PPAP2C 5'Flank 0.21 TCGA-55-7913-01 19 3205972 3205972 C T NCLN Missense_Mutation p.T415M 0.09 tolerated(0.12) possibly_damaging(0.454) TCGA-55-7913-01 19 34706141 34706141 T C LSM14A Silent p.P217P 0.30 TCGA-55-7913-01 19 37619305 37619305 G T ZNF420 Missense_Mutation p.G471V 0.21 deleterious(0) probably_damaging(0.991) TCGA-55-7913-01 19 40421313 40421313 G T FCGBP Missense_Mutation p.P870T 0.22 probably_damaging(1) TCGA-55-7913-01 19 41003491 41003491 C T SPTBN4 Missense_Mutation p.A255V 0.11 deleterious(0.02) benign(0.008) TCGA-55-7913-01 19 43098047 43098047 G T CEACAM8 Missense_Mutation p.L24I 0.23 deleterious(0.01) probably_damaging(0.988) TCGA-55-7913-01 19 43519515 43519515 T A PSG11 Silent p.P239P 0.31 TCGA-55-7913-01 19 44777592 44777592 C T ZNF233 Missense_Mutation p.S260F 0.21 tolerated(0.33) possibly_damaging(0.795) TCGA-55-7913-01 19 45900072 45900072 C A PPP1R13L Missense_Mutation p.G148V 0.44 tolerated_low_confidence(0.17) possibly_damaging(0.883) TCGA-55-7913-01 19 45900073 45900073 C A PPP1R13L Missense_Mutation p.G148C 0.44 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-55-7913-01 19 47824047 47824047 C A C5AR1 Missense_Mutation p.S338Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-55-7913-01 19 4818034 4818034 T G TICAM1 Missense_Mutation p.Q119P 0.15 deleterious(0.03) benign(0.248) TCGA-55-7913-01 19 48608694 48608694 C A PLA2G4C Intron 0.22 TCGA-55-7913-01 19 53057948 53057948 A T ZNF808 Missense_Mutation p.K593N 0.19 deleterious(0.02) benign(0.36) TCGA-55-7913-01 19 53209890 53209890 C A ZNF611 Missense_Mutation p.D140Y 0.13 deleterious(0.01) probably_damaging(0.915) TCGA-55-7913-01 19 54515574 54515574 C A CACNG6 3'UTR 0.26 TCGA-55-7913-01 19 54669241 54669241 C A TMC4 Missense_Mutation p.S292I 0.24 deleterious(0) probably_damaging(0.999) TCGA-55-7913-01 19 55179514 55179514 C T LILRB4 3'UTR 0.10 TCGA-55-7913-01 19 55316331 55316331 C G KIR2DL4 Missense_Mutation p.R54G 0.56 tolerated(0.11) benign(0.214) TCGA-55-7913-01 19 55325316 55325316 C A KIR2DL4 Missense_Mutation p.P260H 0.16 deleterious(0.02) possibly_damaging(0.464) TCGA-55-7913-01 19 55898026 55898026 G A RPL28 Missense_Mutation p.G57D 0.14 tolerated(0.13) possibly_damaging(0.819) TCGA-55-7913-01 19 57649911 57649911 C A ZIM3 Missense_Mutation p.R24L 0.08 tolerated(0.66) benign(0.026) TCGA-55-7913-01 19 58049656 58049657 - A ZNF549 Frame_Shift_Ins p.R431Kfs*4 0.11 TCGA-55-7913-01 1 103405962 103405962 C G COL11A1 Missense_Mutation p.G1102A 0.15 unknown(0) TCGA-55-7913-01 1 108417537 108417537 G T VAV3 Missense_Mutation p.R103S 0.15 deleterious(0) possibly_damaging(0.603) TCGA-55-7913-01 1 109734365 109734365 C A KIAA1324 Silent p.T521T 0.13 TCGA-55-7913-01 1 109808540 109808540 G T CELSR2 Missense_Mutation p.V1971L 0.20 deleterious(0.01) probably_damaging(0.978) TCGA-55-7913-01 1 110587508 110587508 A T STRIP1 Missense_Mutation p.I445L 0.22 tolerated(0.06) benign(0.267) TCGA-55-7913-01 1 111958974 111958974 T A OVGP1 Missense_Mutation p.Y376F 0.24 tolerated(0.61) benign(0.379) TCGA-55-7913-01 1 112309250 112309250 G A DDX20 Missense_Mutation p.R735Q 0.16 tolerated(0.23) benign(0.066) TCGA-55-7913-01 1 116283413 116283413 C T CASQ2 Missense_Mutation p.G119D 0.20 tolerated(1) benign(0.018) TCGA-55-7913-01 1 11907194 11907194 G T NPPA Missense_Mutation p.S142R 0.17 deleterious(0) probably_damaging(1) TCGA-55-7913-01 1 145273314 145273314 G C NOTCH2NL Silent p.G56G 0.03 TCGA-55-7913-01 1 145477436 145477436 A T LIX1L Missense_Mutation p.Q93L 0.43 tolerated(0.13) benign(0.058) TCGA-55-7913-01 1 152083102 152083102 C T TCHH Missense_Mutation p.R864Q 0.10 unknown(0) TCGA-55-7913-01 1 153084974 153084974 G T SPRR2F 3'UTR 0.50 TCGA-55-7913-01 1 157014200 157014200 G A ARHGEF11 5'UTR 0.13 TCGA-55-7913-01 1 158632636 158632636 G T SPTA1 Silent p.R774R 0.54 TCGA-55-7913-01 1 159166883 159166883 C A CADM3 Intron 0.18 TCGA-55-7913-01 1 161518266 161518266 C A FCGR3A Missense_Mutation p.R124S 0.06 deleterious(0) benign(0.406) TCGA-55-7913-01 1 166818294 166818294 G C POGK Missense_Mutation p.E160Q 0.43 deleterious_low_confidence(0.02) benign(0.058) TCGA-55-7913-01 1 176563716 176563716 C T PAPPA2 Missense_Mutation p.R326C 0.15 deleterious(0) probably_damaging(0.94) TCGA-55-7913-01 1 176738881 176738881 C G PAPPA2 Missense_Mutation p.R1488G 0.32 deleterious(0) possibly_damaging(0.814) TCGA-55-7913-01 1 184767324 184767324 C A FAM129A Nonsense_Mutation p.E519* 0.38 TCGA-55-7913-01 1 19653061 19653061 G T PQLC2 Missense_Mutation p.G188C 0.15 deleterious(0) probably_damaging(1) TCGA-55-7913-01 1 197070794 197070794 T A ASPM Missense_Mutation p.R2529S 0.42 tolerated(0.88) benign(0.15) TCGA-55-7913-01 1 201489252 201489252 C A RPS10P7 RNA 0.27 TCGA-55-7913-01 1 206329039 206329039 C T CTSE Silent p.S335S 0.14 TCGA-55-7913-01 1 210761419 210761419 G A HHAT Silent p.E408E 0.29 TCGA-55-7913-01 1 21083703 21083703 G A HP1BP3 Nonsense_Mutation p.Q313* 0.21 TCGA-55-7913-01 1 211192293 211192293 G C KCNH1 Silent p.R288R 0.06 TCGA-55-7913-01 1 212798331 212798331 G A FAM71A Missense_Mutation p.D38N 0.07 deleterious(0.02) possibly_damaging(0.771) TCGA-55-7913-01 1 213134688 213134688 C G VASH2 Intron 0.19 TCGA-55-7913-01 1 216371664 216371664 T A USH2A Silent p.G1358G 0.37 TCGA-55-7913-01 1 231700404 231700404 G C TSNAX Missense_Mutation p.G209A 0.13 deleterious(0) possibly_damaging(0.729) TCGA-55-7913-01 1 235922757 235922757 T A LYST Missense_Mutation p.L2132F 0.06 tolerated_low_confidence(0.05) possibly_damaging(0.732) TCGA-55-7913-01 1 235973322 235973322 C G LYST Missense_Mutation p.E266Q 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-55-7913-01 1 236201526 236201526 T A NID1 Missense_Mutation p.Q388L 0.06 deleterious(0) benign(0.064) TCGA-55-7913-01 1 237957224 237957224 G T RYR2 Missense_Mutation p.G4614W 0.34 probably_damaging(0.99) TCGA-55-7913-01 1 238090208 238090208 C A RP11-193H5.1 RNA 0.47 TCGA-55-7913-01 1 24662994 24662994 G C GRHL3 Missense_Mutation p.E97Q 0.19 tolerated(0.68) benign(0.118) TCGA-55-7913-01 1 247902770 247902770 C A OR14K1 Missense_Mutation p.P285H 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-7913-01 1 248031333 248031333 C A TRIM58 Missense_Mutation p.P280H 0.42 deleterious(0) possibly_damaging(0.88) TCGA-55-7913-01 1 248031334 248031334 T A TRIM58 Silent p.P280P 0.42 TCGA-55-7913-01 1 248637479 248637479 C A OR2T3 Missense_Mutation p.D276E 0.04 deleterious(0) possibly_damaging(0.851) TCGA-55-7913-01 1 248845183 248845183 C T OR14I1 Silent p.Q141Q 0.37 TCGA-55-7913-01 1 26510942 26510942 G T CNKSR1 Missense_Mutation p.A351S 0.15 tolerated(0.48) benign(0.007) TCGA-55-7913-01 1 26607354 26607354 G C SH3BGRL3 Missense_Mutation p.E49D 0.20 tolerated(0.06) probably_damaging(0.952) TCGA-55-7913-01 1 35561419 35561419 G T ZMYM1 Splice_Site p.X33_splice 0.12 TCGA-55-7913-01 1 38269559 38269559 C G YRDC 3'UTR 0.17 TCGA-55-7913-01 1 39305256 39305256 G T RRAGC Missense_Mutation p.T390K 0.15 deleterious_low_confidence(0.03) benign(0.027) TCGA-55-7913-01 1 44456052 44456052 C T B4GALT2 Missense_Mutation p.R380W 0.19 deleterious(0.01) possibly_damaging(0.843) TCGA-55-7913-01 1 60499246 60499246 C A C1orf87 Missense_Mutation p.A311S 0.12 deleterious(0.02) benign(0.045) TCGA-55-7913-01 1 68895532 68895532 A G RPE65 Missense_Mutation p.L510S 0.20 deleterious(0) probably_damaging(0.939) TCGA-55-7913-01 1 71546696 71546696 C G ZRANB2 5'UTR 0.17 TCGA-55-7913-01 1 75038489 75038489 C A C1orf173 Missense_Mutation p.G969C 0.17 deleterious(0) probably_damaging(0.979) TCGA-55-7913-01 1 76344788 76344788 A G MSH4 Missense_Mutation p.D551G 0.11 tolerated(0.79) benign(0.001) TCGA-55-7913-01 1 79383649 79383650 AT - ELTD1 Frame_Shift_Del p.Y516Sfs*49 0.14 TCGA-55-7913-01 1 85506694 85506694 T A MCOLN3 Missense_Mutation p.Q132L 0.14 deleterious(0) benign(0.367) TCGA-55-7913-01 1 85506695 85506695 G A MCOLN3 Nonsense_Mutation p.Q132* 0.15 TCGA-55-7913-01 1 8555174 8555174 G T RERE Missense_Mutation p.D351E 0.11 probably_damaging(0.965) TCGA-55-7913-01 1 90049557 90049557 A T LRRC8B Missense_Mutation p.I450F 0.21 deleterious(0) probably_damaging(0.979) TCGA-55-7913-01 20 13971166 13971166 A G SEL1L2 Silent p.S5S 0.13 TCGA-55-7913-01 20 1617058 1617058 G T SIRPG Missense_Mutation p.P175H 0.51 deleterious(0) probably_damaging(0.999) TCGA-55-7913-01 20 19662598 19662598 C T SLC24A3 Silent p.S288S 0.19 TCGA-55-7913-01 20 23065806 23065806 C A CD93 Missense_Mutation p.D342Y 0.19 deleterious(0.03) possibly_damaging(0.804) TCGA-55-7913-01 20 33447401 33447401 G A GGT7 Missense_Mutation p.R287C 0.25 deleterious(0.02) possibly_damaging(0.72) TCGA-55-7913-01 20 36845792 36845792 C A KIAA1755 Missense_Mutation p.A922S 0.19 tolerated(0.34) benign(0.017) TCGA-55-7913-01 20 36954764 36954764 C A BPI Missense_Mutation p.P368H 0.31 deleterious(0) possibly_damaging(0.843) TCGA-55-7913-01 20 36962874 36962874 C A BPI Missense_Mutation p.L443I 0.22 tolerated(0.91) benign(0.007) TCGA-55-7913-01 20 40727095 40727095 G T PTPRT Missense_Mutation p.S1271Y 0.17 deleterious(0) possibly_damaging(0.899) TCGA-55-7913-01 20 47879979 47879979 T C ZNFX1 Silent p.E731E 0.62 TCGA-55-7913-01 20 50408621 50408621 C A SALL4 Missense_Mutation p.R134M 0.22 tolerated(0.09) benign(0.013) TCGA-55-7913-01 20 61942891 61942891 G T COL20A1 Missense_Mutation p.E513D 0.07 deleterious(0) possibly_damaging(0.898) TCGA-55-7913-01 20 62729715 62729715 G A OPRL1 Missense_Mutation p.V226I 0.13 tolerated(1) benign(0.001) TCGA-55-7913-01 20 7894996 7894996 T C HAO1 Silent p.E120E 0.15 TCGA-55-7913-01 20 9438063 9438063 G T PLCB4 Missense_Mutation p.G988V 0.15 tolerated(0.18) benign(0.234) TCGA-55-7913-01 21 34038827 34038827 T C SYNJ1 Missense_Mutation p.N662S 0.12 deleterious(0.03) benign(0.149) TCGA-55-7913-01 21 45658372 45658372 C A ICOSLG Splice_Site p.X5_splice 0.33 TCGA-55-7913-01 21 45671515 45671515 G T DNMT3L Missense_Mutation p.R254S 0.14 tolerated(0.07) benign(0.031) TCGA-55-7913-01 21 47581964 47581964 C A SPATC1L Missense_Mutation p.G188C 0.24 deleterious(0) possibly_damaging(0.902) TCGA-55-7913-01 22 21134219 21134219 C A SERPIND1 Missense_Mutation p.H207N 0.16 deleterious(0.01) probably_damaging(1) TCGA-55-7913-01 22 25623930 25623930 G T CRYBB2 Missense_Mutation p.S95I 0.32 tolerated(0.07) possibly_damaging(0.792) TCGA-55-7913-01 22 35463031 35463031 C A ISX 5'UTR 0.15 TCGA-55-7913-01 22 50167879 50167879 C A BRD1 3'UTR 0.11 TCGA-55-7913-01 22 50689324 50689324 C G HDAC10 Missense_Mutation p.E24Q 0.11 tolerated(0.08) benign(0.191) TCGA-55-7913-01 2 102501708 102501708 G C MAP4K4 Missense_Mutation p.A1049P 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-7913-01 2 107423227 107423227 C T ST6GAL2 Silent p.T499T 0.19 TCGA-55-7913-01 2 11802244 11802244 G C NTSR2 Silent p.S249S 0.19 TCGA-55-7913-01 2 125405432 125405432 C T CNTNAP5 Silent p.Y657Y 0.28 TCGA-55-7913-01 2 137917892 137917892 G T THSD7B Missense_Mutation p.W493C 0.39 deleterious(0) possibly_damaging(0.878) TCGA-55-7913-01 2 152977056 152977056 T C STAM2 3'UTR 0.42 TCGA-55-7913-01 2 160104950 160104950 T G WDSUB1 Silent p.S402S 0.11 TCGA-55-7913-01 2 169989136 169989136 G A LRP2 Missense_Mutation p.S4559F 0.12 benign(0.379) TCGA-55-7913-01 2 173344428 173344428 T G ITGA6 Missense_Mutation p.L483R 0.13 deleterious(0.02) probably_damaging(0.958) TCGA-55-7913-01 2 187698693 187698693 G - ZSWIM2 Frame_Shift_Del p.H270Tfs*16 0.12 TCGA-55-7913-01 2 191364768 191364768 C T MFSD6 Missense_Mutation p.P734S 0.09 tolerated_low_confidence(0.21) benign(0) TCGA-55-7913-01 2 19553507 19553507 G A OSR1 Silent p.N20N 0.12 TCGA-55-7913-01 2 198358151 198358151 A T HSPD1 Missense_Mutation p.S256T 0.24 tolerated(0.07) benign(0.134) TCGA-55-7913-01 2 206590724 206590724 G T NRP2 Missense_Mutation p.R303M 0.44 tolerated(0.12) probably_damaging(0.998) TCGA-55-7913-01 2 206869932 206869932 C A INO80D Silent p.L748L 0.40 TCGA-55-7913-01 2 210560102 210560102 C A MAP2 Missense_Mutation p.L1070I 0.16 tolerated_low_confidence(0.33) benign(0.141) TCGA-55-7913-01 2 216965043 216965043 C A TMEM169 Silent p.S224S 0.39 TCGA-55-7913-01 2 238647925 238647925 G T LRRFIP1 Intron 0.40 TCGA-55-7913-01 2 242187460 242187460 C A HDLBP Silent p.V563V 0.36 TCGA-55-7913-01 2 25469531 25469531 C T DNMT3A Missense_Mutation p.G413S 0.14 deleterious(0) probably_damaging(1) TCGA-55-7913-01 2 30966330 30966330 T C CAPN13 Missense_Mutation p.N455S 0.13 tolerated(0.07) benign(0.038) TCGA-55-7913-01 2 37088301 37088301 G T STRN Missense_Mutation p.P548H 0.18 tolerated(0.15) benign(0.002) TCGA-55-7913-01 2 70315921 70315921 C T PCBP1 Missense_Mutation p.S349F 0.11 tolerated(0.3) possibly_damaging(0.563) TCGA-55-7913-01 2 80772170 80772170 G T CTNNA2 Missense_Mutation p.A452S 0.22 deleterious(0.02) possibly_damaging(0.506) TCGA-55-7913-01 3 101476616 101476616 C T CEP97 Missense_Mutation p.T389M 0.10 deleterious(0) probably_damaging(0.987) TCGA-55-7913-01 3 108224676 108224676 C T MYH15 Missense_Mutation p.G50E 0.11 deleterious(0.05) benign(0.101) TCGA-55-7913-01 3 141632609 141632609 C T ATP1B3 Silent p.C154C 0.10 TCGA-55-7913-01 3 149089555 149089555 T C TM4SF1 Silent p.G171G 0.36 TCGA-55-7913-01 3 179576889 179576889 G A PEX5L Silent p.S261S 0.53 TCGA-55-7913-01 3 191179035 191179035 T A PYDC2 Silent p.S28S 0.56 TCGA-55-7913-01 3 195965673 195965673 G T PCYT1A Silent p.P330P 0.52 TCGA-55-7913-01 3 25502813 25502813 G A RARB Missense_Mutation p.S96N 0.11 deleterious(0.02) possibly_damaging(0.556) TCGA-55-7913-01 3 38620985 38620985 T C SCN5A Missense_Mutation p.Q1077R 0.15 tolerated(0.39) benign(0.417) TCGA-55-7913-01 3 38627501 38627501 G A SCN5A Missense_Mutation p.P823L 0.22 deleterious(0) probably_damaging(1) TCGA-55-7913-01 3 38739998 38739998 G T SCN10A Silent p.L1571L 0.11 TCGA-55-7913-01 3 44488346 44488346 C G ZNF445 Missense_Mutation p.L939F 0.13 tolerated(0.06) possibly_damaging(0.587) TCGA-55-7913-01 3 48629231 48629231 A T COL7A1 Missense_Mutation p.V461E 0.11 unknown(0) TCGA-55-7913-01 3 49723769 49723769 A C MST1 Missense_Mutation p.F331L 0.11 tolerated(0.12) possibly_damaging(0.547) TCGA-55-7913-01 3 51864825 51864825 G T IQCF3 3'UTR 0.09 TCGA-55-7913-01 3 53262076 53262076 C G TKT Missense_Mutation p.K531N 0.17 tolerated(0.1) benign(0.306) TCGA-55-7913-01 3 62502286 62502286 G A CADPS Missense_Mutation p.A809V 0.21 deleterious(0) possibly_damaging(0.483) TCGA-55-7913-01 4 138442428 138442428 C A PCDH18 Missense_Mutation p.A1055S 0.17 deleterious(0.04) benign(0.26) TCGA-55-7913-01 4 138451498 138451498 C T PCDH18 Missense_Mutation p.R582H 0.17 tolerated(0.58) benign(0.002) TCGA-55-7913-01 4 178897087 178897087 C T LINC01098 Missense_Mutation p.S97F 0.14 deleterious_low_confidence(0) possibly_damaging(0.692) TCGA-55-7913-01 4 184241157 184241157 G T CLDN22 Missense_Mutation p.A72D 0.10 deleterious(0.03) benign(0.091) TCGA-55-7913-01 4 187074810 187074810 G C FAM149A Missense_Mutation p.R33T 0.21 tolerated(0.05) possibly_damaging(0.734) TCGA-55-7913-01 4 187455305 187455305 G T MTNR1A Silent p.L197L 0.16 TCGA-55-7913-01 4 187539051 187539051 G A FAT1 Nonsense_Mutation p.Q2897* 0.20 TCGA-55-7913-01 4 187629893 187629893 C A FAT1 Silent p.G363G 0.15 TCGA-55-7913-01 4 46305627 46305627 C A GABRA2 Nonsense_Mutation p.E236* 0.19 TCGA-55-7913-01 4 46314688 46314688 G T GABRA2 Missense_Mutation p.R101S 0.12 deleterious(0) probably_damaging(1) TCGA-55-7913-01 4 46967088 46967088 T C GABRA4 Missense_Mutation p.N345D 0.15 tolerated(0.09) benign(0.174) TCGA-55-7913-01 4 49005923 49005923 T C CWH43 Missense_Mutation p.L325P 0.17 deleterious(0) probably_damaging(0.976) TCGA-55-7913-01 4 54256689 54256689 G T FIP1L1 Silent p.G133G 0.09 TCGA-55-7913-01 4 55961822 55961822 C A KDR Missense_Mutation p.M913I 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-7913-01 4 57181488 57181488 C T KIAA1211 Missense_Mutation p.A607V 0.11 deleterious(0) possibly_damaging(0.682) TCGA-55-7913-01 4 57221479 57221479 T C AASDH Silent p.S324S 0.20 TCGA-55-7913-01 4 628463 628463 C A PDE6B Intron 0.21 TCGA-55-7913-01 4 65188436 65188436 C A TECRL Missense_Mutation p.D136Y 0.22 deleterious(0) probably_damaging(1) TCGA-55-7913-01 4 70066308 70066308 G T UGT2B11 Silent p.A480A 0.15 TCGA-55-7913-01 4 71508196 71508196 A T ENAM Missense_Mutation p.R351S 0.18 deleterious(0.02) probably_damaging(0.967) TCGA-55-7913-01 4 73963866 73963866 T A ANKRD17 Missense_Mutation p.S1649C 0.14 benign(0.018) TCGA-55-7913-01 4 80246954 80246954 G T NAA11 Nonsense_Mutation p.Y26* 0.22 TCGA-55-7913-01 5 11098805 11098805 A T CTNND2 Missense_Mutation p.M840K 0.14 deleterious(0.01) possibly_damaging(0.543) TCGA-55-7913-01 5 130764843 130764843 T A CTC-432M15.3 Missense_Mutation p.Y1561F 0.14 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-55-7913-01 5 140530997 140530997 C A PCDHB6 Missense_Mutation p.L387I 0.08 tolerated(0.05) benign(0.068) TCGA-55-7913-01 5 140581388 140581388 G C PCDHB11 Missense_Mutation p.A681P 0.12 tolerated_low_confidence(0.09) possibly_damaging(0.713) TCGA-55-7913-01 5 140782778 140782778 G T PCDHGA9 Missense_Mutation p.A87S 0.21 tolerated_low_confidence(0.09) possibly_damaging(0.705) TCGA-55-7913-01 5 140866446 140866446 G T PCDHGC4 Missense_Mutation p.R569L 0.18 tolerated(0.07) benign(0.001) TCGA-55-7913-01 5 145557228 145557228 C G LARS Missense_Mutation p.E3Q 0.14 deleterious(0.02) benign(0.08) TCGA-55-7913-01 5 148695460 148695460 G T AFAP1L1 Missense_Mutation p.R366L 0.12 tolerated(0.06) possibly_damaging(0.828) TCGA-55-7913-01 5 15500704 15500704 G - FBXL7 5'UTR 0.14 TCGA-55-7913-01 5 156752621 156752621 G A CYFIP2 Missense_Mutation p.E627K 0.19 tolerated(0.1) benign(0.158) TCGA-55-7913-01 5 15936872 15936872 C A FBXL7 Silent p.R351R 0.32 TCGA-55-7913-01 5 161324410 161324410 C A GABRA1 Silent p.A451A 0.08 TCGA-55-7913-01 5 161324411 161324411 C A GABRA1 Missense_Mutation p.P452T 0.08 tolerated_low_confidence(0.48) benign(0.004) TCGA-55-7913-01 5 176824890 176824890 C A SLC34A1 Missense_Mutation p.T508K 0.17 deleterious(0) probably_damaging(0.977) TCGA-55-7913-01 5 176857961 176857961 C T GRK6 Silent p.L47L 0.26 TCGA-55-7913-01 5 24487956 24487956 G T CDH10 Missense_Mutation p.P728H 0.06 deleterious(0) probably_damaging(0.998) TCGA-55-7913-01 5 26915868 26915868 T A CDH9 Silent p.I131I 0.07 TCGA-55-7913-01 5 31299699 31299699 C A CDH6 Missense_Mutation p.L258M 0.09 deleterious(0) benign(0.055) TCGA-55-7913-01 5 33588887 33588887 G A ADAMTS12 Silent p.C894C 0.29 TCGA-55-7913-01 5 43122172 43122172 C G ZNF131 Missense_Mutation p.T6R 0.21 deleterious(0.04) benign(0.218) TCGA-55-7913-01 5 5235125 5235125 A G ADAMTS16 Splice_Site p.X617_splice 0.30 TCGA-55-7913-01 5 75964577 75964577 T A IQGAP2 Silent p.T917T 0.16 TCGA-55-7913-01 6 100390952 100390952 T G MCHR2 Missense_Mutation p.N154H 0.32 tolerated(0.13) probably_damaging(1) TCGA-55-7913-01 6 121563399 121563399 G A TBC1D32 Missense_Mutation p.A702V 0.16 tolerated(0.14) benign(0.105) TCGA-55-7913-01 6 132891922 132891922 C A TAAR6 Missense_Mutation p.S154R 0.31 tolerated(0.11) possibly_damaging(0.699) TCGA-55-7913-01 6 150322557 150322557 T A RAET1K RNA 0.50 TCGA-55-7913-01 6 16306898 16306898 C T ATXN1 Missense_Mutation p.A704T 0.20 tolerated(0.18) benign(0.007) TCGA-55-7913-01 6 167791459 167791459 T C TCP10 Missense_Mutation p.H134R 0.05 tolerated(0.06) benign(0.023) TCGA-55-7913-01 6 26285613 26285613 C T HIST1H4H Missense_Mutation p.A39T 0.07 deleterious(0.01) possibly_damaging(0.904) TCGA-55-7913-01 6 27777978 27777978 C A HIST1H3H Silent p.R43R 0.09 TCGA-55-7913-01 6 27782890 27782890 G A HIST1H2BM Silent p.Q23Q 0.15 TCGA-55-7913-01 6 27782891 27782891 A T HIST1H2BM Nonsense_Mutation p.K24* 0.13 TCGA-55-7913-01 6 36291241 36291241 C T C6orf222 Missense_Mutation p.E434K 0.16 tolerated(0.06) possibly_damaging(0.801) TCGA-55-7913-01 6 73952144 73952144 C T KHDC1 Missense_Mutation p.E106K 0.37 deleterious(0) probably_damaging(0.981) TCGA-55-7913-01 6 80720637 80720637 G A TTK Silent p.K192K 0.28 TCGA-55-7913-01 7 100283982 100283982 C A GIGYF1 Missense_Mutation p.D257Y 0.09 tolerated(0.09) unknown(0) TCGA-55-7913-01 7 100674989 100674989 G T MUC17 Missense_Mutation p.V98L 0.14 benign(0.001) TCGA-55-7913-01 7 112407327 112407327 C T TMEM168 Silent p.L673L 0.09 TCGA-55-7913-01 7 113519706 113519706 C A PPP1R3A Missense_Mutation p.D481Y 0.31 tolerated(0.08) probably_damaging(0.935) TCGA-55-7913-01 7 121651902 121651902 G T PTPRZ1 Missense_Mutation p.E934D 0.17 tolerated_low_confidence(0.16) benign(0.333) TCGA-55-7913-01 7 128852167 128852167 C A SMO Missense_Mutation p.P747T 0.12 tolerated_low_confidence(0.27) benign(0.108) TCGA-55-7913-01 7 131825417 131825417 C T PLXNA4 Silent p.S1793S 0.07 TCGA-55-7913-01 7 133164841 133164841 T A EXOC4 Missense_Mutation p.Y456N 0.12 deleterious(0.01) probably_damaging(0.972) TCGA-55-7913-01 7 140481402 140481402 C G BRAF Missense_Mutation p.G469A 0.31 deleterious(0.01) possibly_damaging(0.773) TCGA-55-7913-01 7 141292968 141292968 G T AGK Missense_Mutation p.A42S 0.31 tolerated(0.05) possibly_damaging(0.501) TCGA-55-7913-01 7 141537689 141537689 G C PRSS37 Nonsense_Mutation p.S134* 0.15 TCGA-55-7913-01 7 141770880 141770880 C T MGAM Intron 0.18 TCGA-55-7913-01 7 141796147 141796147 G T MGAM Missense_Mutation p.V1646L 0.26 tolerated(0.14) benign(0.004) TCGA-55-7913-01 7 142198050 142198050 C T TRBV11-2 RNA 0.44 TCGA-55-7913-01 7 142626567 142626567 G C TRPV5 Missense_Mutation p.T148R 0.26 deleterious(0) possibly_damaging(0.841) TCGA-55-7913-01 7 142749638 142749638 G - OR6V1 Frame_Shift_Del p.E68Rfs*4 0.14 TCGA-55-7913-01 7 143771644 143771644 G T OR2A25 Missense_Mutation p.C111F 0.14 deleterious(0) probably_damaging(0.999) TCGA-55-7913-01 7 143771994 143771994 C T OR2A25 Nonsense_Mutation p.Q228* 0.09 TCGA-55-7913-01 7 148823316 148823316 C A ZNF425 5'UTR 0.33 TCGA-55-7913-01 7 154667782 154667782 G T DPP6 Nonsense_Mutation p.E684* 0.10 TCGA-55-7913-01 7 155301747 155301747 T C CNPY1 5'UTR 0.11 TCGA-55-7913-01 7 158334247 158334247 T A PTPRN2 Intron 0.27 TCGA-55-7913-01 7 18833000 18833000 C A HDAC9 Missense_Mutation p.H749Q 0.26 deleterious(0) possibly_damaging(0.873) TCGA-55-7913-01 7 21516848 21516848 T A SP4 Silent p.S610S 0.11 TCGA-55-7913-01 7 23826155 23826155 C - STK31 Frame_Shift_Del p.K769Rfs*2 0.08 TCGA-55-7913-01 7 23871911 23871911 G T STK31 Nonsense_Mutation p.E996* 0.07 TCGA-55-7913-01 7 24749878 24749878 G C DFNA5 Missense_Mutation p.S276C 0.10 tolerated(0.05) possibly_damaging(0.866) TCGA-55-7913-01 7 27219330 27219330 G T RP1-170O19.20 5'UTR 0.25 TCGA-55-7913-01 7 30494868 30494868 G C NOD1 Silent p.L87L 0.06 TCGA-55-7913-01 7 31132293 31132293 C T ADCYAP1R1 Silent p.I330I 0.13 TCGA-55-7913-01 7 4089010 4089010 C T SDK1 Missense_Mutation p.T878M 0.07 deleterious(0.01) benign(0.104) TCGA-55-7913-01 7 47933635 47933635 C T PKD1L1 Missense_Mutation p.V765M 0.28 deleterious(0) probably_damaging(1) TCGA-55-7913-01 7 4830912 4830912 G A AP5Z1 Missense_Mutation p.V774M 0.13 deleterious(0.05) benign(0.087) TCGA-55-7913-01 7 48506616 48506616 G T ABCA13 Missense_Mutation p.L4293F 0.07 benign(0.03) TCGA-55-7913-01 7 63726904 63726904 G T ZNF679 Missense_Mutation p.C298F 0.38 deleterious(0.01) probably_damaging(1) TCGA-55-7913-01 7 74211826 74211826 C T GTF2IRD2 Silent p.V675V 0.09 TCGA-55-7913-01 7 92735356 92735356 C A SAMD9 Missense_Mutation p.V19L 0.12 deleterious(0) probably_damaging(0.964) TCGA-55-7913-01 8 104413838 104413838 C T SLC25A32 Missense_Mutation p.A240T 0.14 tolerated(0.33) benign(0.034) TCGA-55-7913-01 8 10470743 10470743 G T RP1L1 Missense_Mutation p.P289T 0.39 benign(0.197) TCGA-55-7913-01 8 105001617 105001617 C T RIMS2 Silent p.V1004V 0.24 TCGA-55-7913-01 8 113249435 113249435 C G CSMD3 Missense_Mutation p.M3537I 0.25 tolerated(0.05) benign(0.07) TCGA-55-7913-01 8 123964535 123964535 T A ZHX2 Missense_Mutation p.L262Q 0.16 deleterious(0) probably_damaging(0.986) TCGA-55-7913-01 8 16021697 16021697 C G MSR1 Missense_Mutation p.E232Q 0.22 tolerated(0.29) benign(0.069) TCGA-55-7913-01 8 2820749 2820749 C T CSMD1 Missense_Mutation p.C3150Y 0.31 probably_damaging(0.999) TCGA-55-7913-01 8 52321989 52321989 C T PXDNL Missense_Mutation p.G732D 0.28 deleterious(0) probably_damaging(0.995) TCGA-55-7913-01 8 57078979 57078979 C T PLAG1 Missense_Mutation p.M442I 0.13 tolerated(0.13) benign(0.001) TCGA-55-7913-01 8 59059006 59059006 G A FAM110B Missense_Mutation p.E73K 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-55-7913-01 8 69033262 69033262 G T PREX2 Missense_Mutation p.Q1234H 0.16 tolerated(0.17) benign(0.003) TCGA-55-7913-01 8 77767159 77767159 G T ZFHX4 Missense_Mutation p.V2668L 0.18 benign(0.057) TCGA-55-7913-01 8 77767504 77767504 A G ZFHX4 Missense_Mutation p.N2783D 0.19 possibly_damaging(0.546) TCGA-55-7913-01 8 87656859 87656859 T A CNGB3 Missense_Mutation p.Y349F 0.17 deleterious(0) probably_damaging(0.955) TCGA-55-7913-01 8 99440333 99440333 C A KCNS2 Silent p.R42R 0.23 TCGA-55-7913-01 9 104449269 104449269 G T GRIN3A Missense_Mutation p.Q305K 0.14 tolerated(0.76) benign(0) TCGA-55-7913-01 9 125273105 125273105 G T OR1J2 Missense_Mutation p.V9L 0.26 tolerated_low_confidence(0.06) benign(0.02) TCGA-55-7913-01 9 135974060 135974060 T A RALGDS Nonsense_Mutation p.K887* 0.29 TCGA-55-7913-01 9 139650954 139650954 C G LCN8 Intron 0.11 TCGA-55-7913-01 9 2653872 2653872 C T VLDLR 3'UTR 0.11 TCGA-55-7913-01 9 34256184 34256184 C A KIF24 Missense_Mutation p.D1141Y 0.11 deleterious(0) possibly_damaging(0.907) TCGA-55-7913-01 9 40773950 40773950 C A ZNF658 Missense_Mutation p.C442F 0.11 deleterious(0) possibly_damaging(0.694) TCGA-55-7913-01 9 40774025 40774025 C T ZNF658 Missense_Mutation p.C417Y 0.13 deleterious(0.02) benign(0) TCGA-55-7913-01 9 43627725 43627725 C A SPATA31A6 Missense_Mutation p.S321I 0.12 deleterious(0) probably_damaging(0.918) TCGA-55-7913-01 9 77567246 77567246 T A C9orf40 Silent p.T94T 0.27 TCGA-55-7913-01 9 80919757 80919757 G T PSAT1 Missense_Mutation p.D100Y 0.18 deleterious(0) probably_damaging(1) TCGA-55-7913-01 9 84607455 84607455 C A SPATA31D1 Missense_Mutation p.H690Q 0.08 deleterious(0) possibly_damaging(0.659) TCGA-55-7913-01 9 86554606 86554606 C A C9orf64 Silent p.S282S 0.09 TCGA-55-7913-01 9 90321495 90321495 G C DAPK1 Missense_Mutation p.W1170S 0.15 deleterious(0) probably_damaging(0.961) TCGA-55-7913-01 9 95599312 95599312 C A ANKRD19P RNA 0.22 TCGA-55-7913-01 9 95841756 95841756 A T SUSD3 Silent p.S143S 0.06 TCGA-55-7913-01 9 97356055 97356055 C T FBP2 5'UTR 0.26 TCGA-55-7913-01 X 111025181 111025181 G A TRPC5 Silent p.R694R 0.13 TCGA-55-7913-01 X 134166461 134166461 C T FAM127A Silent p.I16I 0.17 TCGA-55-7913-01 X 135432564 135432564 G A GPR112 Silent p.S2233S 0.16 TCGA-55-7913-01 X 150867286 150867286 C A PRRG3 5'UTR 0.26 TCGA-55-7913-01 X 153173153 153173153 C A ARHGAP4 3'UTR 0.30 TCGA-55-7913-01 X 1712782 1712782 G T AKAP17A Missense_Mutation p.G143W 0.23 deleterious(0) probably_damaging(0.998) TCGA-55-7913-01 X 1742030 1742030 A T ASMT Splice_Site p.X24_splice 0.11 TCGA-55-7913-01 X 17746076 17746076 G A NHS Missense_Mutation p.D1263N 0.09 tolerated_low_confidence(0.11) benign(0.011) TCGA-55-7913-01 X 18230762 18230762 G T BEND2 Missense_Mutation p.P139T 0.10 tolerated(0.18) benign(0.021) TCGA-55-7913-01 X 30237132 30237132 C A MAGEB2 Missense_Mutation p.F145L 0.12 deleterious(0.01) benign(0.256) TCGA-55-7913-01 X 30326406 30326406 G C NR0B1 Missense_Mutation p.Q359E 0.16 tolerated(0.08) benign(0.044) TCGA-55-7913-01 X 3227795 3227795 C A MXRA5 Missense_Mutation p.G2817C 0.08 deleterious(0) probably_damaging(1) TCGA-55-7913-01 X 3228025 3228025 G T MXRA5 Missense_Mutation p.T2740N 0.10 deleterious(0) possibly_damaging(0.904) TCGA-55-7913-01 X 32407753 32407753 G T DMD Missense_Mutation p.F1461L 0.11 possibly_damaging(0.68) TCGA-55-7913-01 X 34148958 34148958 G T FAM47A Missense_Mutation p.P480T 0.08 deleterious(0.02) probably_damaging(0.991) TCGA-55-7913-01 X 47775471 47775471 G T ZNF81 Missense_Mutation p.G476W 0.23 deleterious(0) possibly_damaging(0.907) TCGA-55-7913-01 X 47775472 47775472 G T ZNF81 Missense_Mutation p.G476V 0.23 deleterious(0.01) possibly_damaging(0.548) TCGA-55-7913-01 X 48206409 48206409 C A SSX3 3'UTR 0.22 TCGA-55-7913-01 X 48822640 48822640 G A KCND1 Missense_Mutation p.R514C 0.29 tolerated_low_confidence(0.21) benign(0.133) TCGA-55-7913-01 X 49452083 49452083 G T PAGE1 3'UTR 0.15 TCGA-55-7913-01 X 53114037 53114037 G T TSPYL2 Missense_Mutation p.R329L 0.07 tolerated(0.69) possibly_damaging(0.702) TCGA-55-7913-01 X 53607906 53607906 G T HUWE1 Silent p.I1867I 0.12 TCGA-55-7913-01 X 54275593 54275593 G C WNK3 Missense_Mutation p.T1063R 0.07 deleterious(0.04) benign(0.003) TCGA-55-7913-01 X 55650678 55650678 G T FOXR2 Missense_Mutation p.Q178H 0.09 tolerated(0.22) benign(0.022) TCGA-55-7913-01 X 72667368 72667368 G T CDX4 Missense_Mutation p.M93I 0.37 tolerated(0.5) benign(0.004) TCGA-55-7913-01 X 83129464 83129464 C T CYLC1 Missense_Mutation p.S583F 0.29 tolerated(0.27) benign(0.37) TCGA-55-7914-01 10 101564028 101564028 C G ABCC2 Missense_Mutation p.Q488E 0.30 deleterious(0.03) possibly_damaging(0.649) TCGA-55-7914-01 10 102753043 102753043 G T C10orf2 Missense_Mutation p.D611Y 0.27 deleterious(0) probably_damaging(0.98) TCGA-55-7914-01 10 111878980 111878980 G T ADD3 Missense_Mutation p.M243I 0.24 deleterious(0) possibly_damaging(0.53) TCGA-55-7914-01 10 121431866 121431866 C T BAG3 Missense_Mutation p.R203W 0.17 deleterious(0) probably_damaging(0.994) TCGA-55-7914-01 10 30318595 30318595 T G KIAA1462 Missense_Mutation p.E161A 0.03 deleterious(0) probably_damaging(1) TCGA-55-7914-01 10 49448430 49448430 C T FRMPD2 Missense_Mutation p.A225T 0.12 tolerated(0.29) benign(0.066) TCGA-55-7914-01 10 49448431 49448431 C A FRMPD2 Missense_Mutation p.Q224H 0.12 tolerated(0.59) benign(0.115) TCGA-55-7914-01 11 113650992 113650992 C A CLDN25 Silent p.R159R 0.20 TCGA-55-7914-01 11 117100519 117100519 G A PCSK7 Silent p.P14P 0.12 TCGA-55-7914-01 11 123909361 123909361 G A OR10G7 Silent p.V116V 0.31 TCGA-55-7914-01 11 129814722 129814722 C T PRDM10 Missense_Mutation p.V236M 0.11 deleterious(0.04) possibly_damaging(0.535) TCGA-55-7914-01 11 20113762 20113762 A G NAV2 Missense_Mutation p.E1947G 0.32 deleterious(0.01) probably_damaging(0.995) TCGA-55-7914-01 11 2432639 2432639 C T TRPM5 Missense_Mutation p.V909M 0.32 deleterious(0) probably_damaging(0.984) TCGA-55-7914-01 11 55541676 55541676 G C OR5D13 Missense_Mutation p.G255R 0.29 deleterious(0) possibly_damaging(0.867) TCGA-55-7914-01 11 55682019 55682020 - A OR5W2 Frame_Shift_Ins p.L14Sfs*7 0.11 TCGA-55-7914-01 11 55703583 55703583 C A OR5I1 Silent p.G98G 0.16 TCGA-55-7914-01 11 55905192 55905192 C T OR8J3 Translation_Start_Site p.M1? 0.33 deleterious(0) benign(0.011) TCGA-55-7914-01 11 55927495 55927495 T A OR8K5 Missense_Mutation p.Q100L 0.18 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-55-7914-01 11 56044054 56044054 A - OR5T1 Frame_Shift_Del p.R315Dfs*4 0.22 TCGA-55-7914-01 11 58920495 58920495 G T FAM111A Missense_Mutation p.V452L 0.20 tolerated(0.07) benign(0.409) TCGA-55-7914-01 11 64694295 64694295 G C PPP2R5B Missense_Mutation p.R104P 0.20 deleterious(0) probably_damaging(0.986) TCGA-55-7914-01 11 67263770 67263770 C G PITPNM1 Silent p.A732A 0.24 TCGA-55-7914-01 11 6891666 6891668 ATG TT OR10A2 Frame_Shift_Del p.C228Ffs*15 0.15 TCGA-55-7914-01 11 94129565 94129565 C A GPR83 Missense_Mutation p.Q171H 0.27 deleterious(0.03) benign(0.169) TCGA-55-7914-01 12 101732712 101732712 T C UTP20 Silent p.S1330S 0.27 TCGA-55-7914-01 12 105198953 105198953 G A SLC41A2 Nonsense_Mutation p.R567* 0.07 TCGA-55-7914-01 12 115114207 115114207 T C TBX3 Missense_Mutation p.D337G 0.34 deleterious(0.01) probably_damaging(0.995) TCGA-55-7914-01 12 122826024 122826024 T C CLIP1 Missense_Mutation p.H576R 0.16 tolerated(0.12) benign(0.027) TCGA-55-7914-01 12 131498749 131498749 C T GPR133 Missense_Mutation p.A446V 0.14 tolerated(0.15) benign(0.1) TCGA-55-7914-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.45 deleterious(0.04) probably_damaging(0.993) TCGA-55-7914-01 12 52962144 52962144 G A KRT74 Silent p.D388D 0.10 TCGA-55-7914-01 12 57573898 57573898 T G LRP1 Missense_Mutation p.L1737R 0.26 probably_damaging(0.987) TCGA-55-7914-01 12 71946940 71946940 T G LGR5 Missense_Mutation p.N172K 0.13 deleterious(0) probably_damaging(0.995) TCGA-55-7914-01 12 80266692 80266692 C A PPP1R12A Missense_Mutation p.M88I 0.36 deleterious(0) probably_damaging(0.993) TCGA-55-7914-01 12 99042414 99042414 A T APAF1 Missense_Mutation p.Q50L 0.29 deleterious(0.03) benign(0.006) TCGA-55-7914-01 13 25743844 25743844 T A AMER2 Missense_Mutation p.K638N 0.22 deleterious(0) probably_damaging(0.997) TCGA-55-7914-01 13 26116088 26116088 G T ATP8A2 Missense_Mutation p.R228L 0.21 tolerated(0.31) benign(0.021) TCGA-55-7914-01 13 29598883 29598883 G T MTUS2 Silent p.R26R 0.28 TCGA-55-7914-01 13 31513846 31513846 G T TEX26 Missense_Mutation p.W26L 0.18 deleterious(0) probably_damaging(0.983) TCGA-55-7914-01 13 31513847 31513847 G T TEX26 Missense_Mutation p.W26C 0.17 deleterious(0) probably_damaging(0.997) TCGA-55-7914-01 13 41827091 41827091 T C MTRF1 Missense_Mutation p.T195A 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-55-7914-01 13 43155388 43155388 T A TNFSF11 Missense_Mutation p.C116S 0.22 deleterious(0) probably_damaging(0.998) TCGA-55-7914-01 13 77670506 77670506 C A MYCBP2 Missense_Mutation p.V3261L 0.24 probably_damaging(0.925) TCGA-55-7914-01 13 97485168 97485168 C G HS6ST3 Missense_Mutation p.Q378E 0.23 deleterious(0.04) probably_damaging(0.996) TCGA-55-7914-01 14 22616452 22616452 G T TRAV27 Missense_Mutation p.V65L 0.24 tolerated(0.23) benign(0.003) TCGA-55-7914-01 14 22671163 22671163 G T TRAV26-2 Missense_Mutation p.M76I 0.22 tolerated(0.39) benign(0.023) TCGA-55-7914-01 14 38679155 38679155 C T SSTR1 Silent p.L187L 0.22 TCGA-55-7914-01 14 53529739 53529739 T G DDHD1 Missense_Mutation p.E563A 0.27 tolerated(0.08) benign(0.258) TCGA-55-7914-01 14 70634960 70634960 C A SLC8A3 Silent p.L60L 0.34 TCGA-55-7914-01 14 70713288 70713288 T A ADAM21P1 RNA 0.17 TCGA-55-7914-01 14 71485796 71485796 C G PCNX Missense_Mutation p.L1023V 0.25 tolerated(0.07) probably_damaging(0.997) TCGA-55-7914-01 14 94417386 94417386 T C ASB2 Missense_Mutation p.Q280R 0.28 tolerated(0.11) possibly_damaging(0.612) TCGA-55-7914-01 15 28263576 28263576 G T OCA2 Missense_Mutation p.D258E 0.16 tolerated(0.88) benign(0.01) TCGA-55-7914-01 15 28460848 28460848 G A HERC2 Silent p.L2043L 0.33 TCGA-55-7914-01 15 30664536 30664536 C A CHRFAM7A Missense_Mutation p.G113C 0.29 deleterious(0) probably_damaging(0.997) TCGA-55-7914-01 15 49255125 49255125 A G SHC4 Missense_Mutation p.Y30H 0.29 deleterious(0) probably_damaging(0.999) TCGA-55-7914-01 15 49800505 49800505 C G FAM227B Silent p.L305L 0.27 TCGA-55-7914-01 15 50168535 50168535 A T ATP8B4 Silent p.A989A 0.16 TCGA-55-7914-01 15 50339591 50339591 T C ATP8B4 Missense_Mutation p.Q53R 0.17 tolerated(0.13) probably_damaging(0.985) TCGA-55-7914-01 15 71185957 71185957 C T LRRC49 Missense_Mutation p.S28L 0.20 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-55-7914-01 15 81575082 81575082 T A IL16 Missense_Mutation p.L395Q 0.18 tolerated(0.33) probably_damaging(0.953) TCGA-55-7914-01 15 89398786 89398786 G A ACAN Silent p.E990E 0.14 TCGA-55-7914-01 16 48245002 48245004 CGG AT ABCC11 Frame_Shift_Del p.P488Hfs*20 0.27 TCGA-55-7914-01 16 67428917 67428917 C A ZDHHC1 Silent p.R406R 0.17 TCGA-55-7914-01 16 8740024 8740024 C T METTL22 3'UTR 0.23 TCGA-55-7914-01 17 2239378 2239378 C A TSR1 Missense_Mutation p.D52Y 0.27 deleterious(0) probably_damaging(0.984) TCGA-55-7914-01 17 2274591 2274591 C T SGSM2 Missense_Mutation p.P487S 0.37 tolerated(0.31) benign(0.041) TCGA-55-7914-01 17 26086080 26086080 G A NOS2 Missense_Mutation p.R1061W 0.31 deleterious(0.01) probably_damaging(0.932) TCGA-55-7914-01 17 26712168 26712168 A T SARM1 Missense_Mutation p.T468S 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-55-7914-01 17 26888589 26888589 C T PIGS Missense_Mutation p.R176Q 0.37 tolerated(0.33) benign(0.015) TCGA-55-7914-01 17 28935493 28935493 C T SMURF2P1 RNA 0.15 TCGA-55-7914-01 17 2995442 2995442 C T OR1D2 Missense_Mutation p.M283I 0.23 deleterious(0.01) probably_damaging(0.993) TCGA-55-7914-01 17 39619225 39619225 G T KRT32 Silent p.I358I 0.26 TCGA-55-7914-01 17 58018242 58018242 C G RPS6KB1 Missense_Mutation p.Q389E 0.18 tolerated(0.14) possibly_damaging(0.824) TCGA-55-7914-01 17 64208278 64208278 A C APOH Silent p.T337T 0.11 TCGA-55-7914-01 17 7012167 7012167 G A ASGR2 Silent p.S55S 0.67 TCGA-55-7914-01 17 7155866 7155866 G A ELP5 Silent p.L15L 0.28 TCGA-55-7914-01 17 73780814 73780814 C T UNK 5'Flank 0.30 TCGA-55-7914-01 17 74328494 74328494 C A PRPSAP1 Nonsense_Mutation p.E105* 0.21 TCGA-55-7914-01 17 7577058 7577058 C - TP53 Frame_Shift_Del p.E294Sfs*51 0.23 TCGA-55-7914-01 17 80676808 80676808 G T FN3KRP Missense_Mutation p.M56I 0.35 deleterious(0.04) benign(0.141) TCGA-55-7914-01 18 31318469 31318469 G T ASXL3 Missense_Mutation p.E367D 0.33 probably_damaging(0.999) TCGA-55-7914-01 18 32407563 32407563 C G DTNA Silent p.P336P 0.16 TCGA-55-7914-01 18 56651465 56651465 G A ZNF532 Missense_Mutation p.V1225I 0.23 deleterious(0) probably_damaging(0.997) TCGA-55-7914-01 18 61377489 61377489 G T SERPINB11 Missense_Mutation p.S21I 0.45 deleterious(0.02) possibly_damaging(0.583) TCGA-55-7914-01 19 30165102 30165102 G A PLEKHF1 Missense_Mutation p.R119H 0.09 deleterious(0) probably_damaging(0.992) TCGA-55-7914-01 19 30935517 30935517 T G ZNF536 Missense_Mutation p.C350G 0.27 deleterious(0) probably_damaging(0.998) TCGA-55-7914-01 19 32923654 32923654 G C DPY19L3 Missense_Mutation p.E90D 0.20 tolerated(0.53) probably_damaging(0.988) TCGA-55-7914-01 19 33980911 33980911 C A PEPD Missense_Mutation p.G165V 0.21 deleterious(0) benign(0.195) TCGA-55-7914-01 19 37100919 37100919 G T ZNF382 Missense_Mutation p.V35L 0.18 deleterious(0) probably_damaging(0.996) TCGA-55-7914-01 19 51217099 51217099 C T SHANK1 Missense_Mutation p.A250T 0.10 possibly_damaging(0.69) TCGA-55-7914-01 19 54780767 54780767 C A LILRB2 Silent p.L459L 0.33 TCGA-55-7914-01 19 55044043 55044043 G T KIR3DX1 Missense_Mutation p.C10F 0.21 deleterious(0) possibly_damaging(0.56) TCGA-55-7914-01 19 56307481 56307481 G T NLRP11 Silent p.A769A 0.21 TCGA-55-7914-01 19 57743553 57743553 A G AURKC Missense_Mutation p.H86R 0.21 deleterious(0.03) possibly_damaging(0.855) TCGA-55-7914-01 19 58101399 58101399 G T ZIK1 Missense_Mutation p.D74Y 0.10 deleterious(0.03) possibly_damaging(0.907) TCGA-55-7914-01 19 7963879 7963879 G A LRRC8E Missense_Mutation p.D158N 0.05 deleterious(0) probably_damaging(0.981) TCGA-55-7914-01 19 9011464 9011464 C T MUC16 Missense_Mutation p.M12923I 0.10 benign(0.31) TCGA-55-7914-01 1 12921604 12921604 T A PRAMEF2 Silent p.S465S 0.27 TCGA-55-7914-01 1 149906417 149906417 C A MTMR11 Silent p.V157V 0.23 TCGA-55-7914-01 1 155735478 155735478 G A GON4L Silent p.F1262F 0.07 TCGA-55-7914-01 1 158909030 158909030 C T PYHIN1 Missense_Mutation p.S191L 0.16 tolerated(0.76) probably_damaging(0.977) TCGA-55-7914-01 1 165386317 165386317 G A RXRG Missense_Mutation p.R195C 0.21 deleterious(0) probably_damaging(1) TCGA-55-7914-01 1 169511240 169511240 G A F5 Nonsense_Mutation p.R1030* 0.33 TCGA-55-7914-01 1 170928657 170928657 C A MROH9 Silent p.S69S 0.10 TCGA-55-7914-01 1 171251200 171251200 A G FMO1 Missense_Mutation p.K304R 0.19 tolerated(0.13) benign(0.376) TCGA-55-7914-01 1 171605171 171605171 C T MYOC Missense_Mutation p.R470H 0.05 tolerated(0.14) benign(0.052) TCGA-55-7914-01 1 176709310 176709310 G T PAPPA2 Missense_Mutation p.G1377W 0.34 tolerated(0.11) possibly_damaging(0.907) TCGA-55-7914-01 1 202863732 202863732 C T KLHL12 Silent p.V427V 0.24 TCGA-55-7914-01 1 247752427 247752427 G T OR2G2 Nonsense_Mutation p.G256* 0.42 TCGA-55-7914-01 1 247875472 247875472 C A OR6F1 Nonsense_Mutation p.E196* 0.38 TCGA-55-7914-01 1 247921189 247921189 T C OR1C1 Missense_Mutation p.I174V 0.47 tolerated(0.19) benign(0.022) TCGA-55-7914-01 1 248059229 248059229 T A OR2W3 Missense_Mutation p.L114H 0.29 deleterious(0) probably_damaging(0.996) TCGA-55-7914-01 1 248201902 248201902 G T OR2L2 Silent p.G111G 0.22 TCGA-55-7914-01 1 248403107 248403107 C G OR2M4 Missense_Mutation p.R293G 0.14 deleterious(0) benign(0.314) TCGA-55-7914-01 1 27106648 27106648 G A ARID1A Missense_Mutation p.G2087R 0.46 probably_damaging(0.96) TCGA-55-7914-01 1 67724829 67724829 C A IL23R 3'UTR 0.13 TCGA-55-7914-01 20 11900381 11900381 G T BTBD3 Missense_Mutation p.G145W 0.26 deleterious(0) probably_damaging(0.992) TCGA-55-7914-01 20 17581671 17581671 G C DSTN Missense_Mutation p.E98Q 0.17 deleterious(0.04) benign(0.019) TCGA-55-7914-01 20 18794596 18794596 C A SCP2D1 Missense_Mutation p.P46Q 0.37 tolerated(0.17) benign(0.002) TCGA-55-7914-01 20 44839089 44839089 C G CDH22 Silent p.V381V 0.18 TCGA-55-7914-01 20 52199100 52199100 C A ZNF217 Missense_Mutation p.R89L 0.23 deleterious(0.01) probably_damaging(1) TCGA-55-7914-01 20 61444194 61444194 G A OGFR Silent p.K409K 0.21 TCGA-55-7914-01 21 44182290 44182290 G A PDE9A Missense_Mutation p.E395K 0.17 tolerated(0.6) benign(0.011) TCGA-55-7914-01 21 47546443 47546443 C T COL6A2 Missense_Mutation p.P817S 0.55 tolerated(0.07) possibly_damaging(0.695) TCGA-55-7914-01 21 47769710 47769710 G C PCNT Missense_Mutation p.E440D 0.12 benign(0.006) TCGA-55-7914-01 22 29709842 29709842 G A RASL10A Intron 0.09 TCGA-55-7914-01 22 43898607 43898607 C T MPPED1 Missense_Mutation p.R278W 0.32 deleterious(0) possibly_damaging(0.809) TCGA-55-7914-01 22 45599789 45599789 G A KIAA0930 Silent p.F203F 0.28 TCGA-55-7914-01 22 50962824 50962824 C G SCO2 Missense_Mutation p.R6P 0.06 tolerated_low_confidence(0.09) benign(0.253) TCGA-55-7914-01 2 103317539 103317539 T C SLC9A2 Missense_Mutation p.F533L 0.16 deleterious(0.03) benign(0.214) TCGA-55-7914-01 2 107084756 107084756 C T RGPD3 5'UTR 0.27 TCGA-55-7914-01 2 107460224 107460224 C A ST6GAL2 Silent p.P70P 0.32 TCGA-55-7914-01 2 108863744 108863744 T C SULT1C3 Missense_Mutation p.S32P 0.21 tolerated(0.06) benign(0.167) TCGA-55-7914-01 2 109547447 109547447 C G EDAR Silent p.T8T 0.24 TCGA-55-7914-01 2 11355773 11355773 T G ROCK2 Splice_Site p.X488_splice 0.27 TCGA-55-7914-01 2 159170350 159170350 T C CCDC148 Missense_Mutation p.Y274C 0.32 deleterious(0) probably_damaging(0.966) TCGA-55-7914-01 2 160189181 160189181 C T BAZ2B Missense_Mutation p.R1938Q 0.27 benign(0.274) TCGA-55-7914-01 2 17696895 17696895 G C RAD51AP2 Missense_Mutation p.Q930E 0.27 deleterious(0.01) possibly_damaging(0.654) TCGA-55-7914-01 2 179451529 179451529 G T TTN Missense_Mutation p.P21367T 0.21 TCGA-55-7914-01 2 20483205 20483205 C A PUM2 Missense_Mutation p.G445V 0.30 deleterious(0) probably_damaging(1) TCGA-55-7914-01 2 21250797 21250797 C A APOB Missense_Mutation p.G657V 0.10 probably_damaging(1) TCGA-55-7914-01 2 234238223 234238223 G T SAG Missense_Mutation p.V245L 0.42 deleterious(0) probably_damaging(0.985) TCGA-55-7914-01 2 234580839 234580839 G C UGT1A9 Missense_Mutation p.D87H 0.41 deleterious(0.01) benign(0.089) TCGA-55-7914-01 2 234750291 234750291 C T HJURP Missense_Mutation p.V379M 0.29 tolerated(0.22) possibly_damaging(0.882) TCGA-55-7914-01 2 44201338 44201338 G - LRPPRC Frame_Shift_Del p.P369Qfs*13 0.18 TCGA-55-7914-01 2 44999312 44999312 A C CAMKMT 3'UTR 0.29 TCGA-55-7914-01 2 48950765 48950765 T C LHCGR Missense_Mutation p.I152V 0.26 tolerated(0.1) benign(0.129) TCGA-55-7914-01 2 55464460 55464461 - T MTIF2 Frame_Shift_Ins p.F659Ifs*2 0.22 TCGA-55-7914-01 2 72562091 72562091 G T EXOC6B Missense_Mutation p.F727L 0.25 deleterious(0) benign(0.335) TCGA-55-7914-01 2 73172187 73172187 C A SFXN5 Silent p.T329T 0.24 TCGA-55-7914-01 3 112643993 112643993 G T CD200R1 Missense_Mutation p.L273I 0.19 tolerated(0.52) probably_damaging(0.953) TCGA-55-7914-01 3 112643994 112643994 G T CD200R1 Silent p.I272I 0.20 TCGA-55-7914-01 3 11600212 11600212 C G VGLL4 Missense_Mutation p.V237L 0.40 tolerated(0.24) benign(0.381) TCGA-55-7914-01 3 123452802 123452802 C T MYLK Silent p.L347L 0.27 TCGA-55-7914-01 3 142542444 142542444 G A PCOLCE2 Silent p.T293T 0.29 TCGA-55-7914-01 3 164766974 164766974 C A SI Missense_Mutation p.W552C 0.19 deleterious(0.01) possibly_damaging(0.831) TCGA-55-7914-01 3 164766975 164766975 C G SI Missense_Mutation p.W552S 0.19 tolerated(0.09) benign(0.041) TCGA-55-7914-01 3 183521783 183521783 A T YEATS2 Missense_Mutation p.R1197S 0.31 deleterious(0) probably_damaging(0.997) TCGA-55-7914-01 3 2944582 2944582 G T CNTN4 Missense_Mutation p.G367V 0.29 deleterious(0) probably_damaging(1) TCGA-55-7914-01 3 49897103 49897103 C T CAMKV Missense_Mutation p.S385N 0.38 tolerated(0.06) probably_damaging(0.937) TCGA-55-7914-01 3 98235667 98235667 G C CLDND1 Missense_Mutation p.Q223E 0.33 tolerated(0.63) benign(0.009) TCGA-55-7914-01 4 119718857 119718857 G A SEC24D Missense_Mutation p.A341V 0.27 deleterious(0) probably_damaging(0.999) TCGA-55-7914-01 4 142640546 142640546 G A IL15 5'UTR 0.33 TCGA-55-7914-01 4 153332619 153332619 C A FBXW7 Nonsense_Mutation p.E113* 0.22 TCGA-55-7914-01 4 41694357 41694357 G A LIMCH1 Missense_Mutation p.R1061Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-55-7914-01 4 56770652 56770652 G T EXOC1 Missense_Mutation p.Q892H 0.23 deleterious(0.03) probably_damaging(0.982) TCGA-55-7914-01 4 6107526 6107526 C A JAKMIP1 Missense_Mutation p.A100S 0.30 tolerated(0.39) benign(0.094) TCGA-55-7914-01 4 90170093 90170093 G A GPRIN3 Missense_Mutation p.P390L 0.30 deleterious(0) probably_damaging(0.938) TCGA-55-7914-01 5 1065452 1065452 A T SLC12A7 Missense_Mutation p.W795R 0.27 deleterious(0) probably_damaging(0.968) TCGA-55-7914-01 5 112384766 112384766 G A MCC Intron 0.23 TCGA-55-7914-01 5 129520888 129520888 G A CHSY3 Missense_Mutation p.E685K 0.25 tolerated(0.17) benign(0.3) TCGA-55-7914-01 5 13701495 13701495 T C DNAH5 Silent p.E4463E 0.12 TCGA-55-7914-01 5 139260463 139260463 C A NRG2 Silent p.R323R 0.31 TCGA-55-7914-01 5 140188457 140188457 C T PCDHA4 Missense_Mutation p.A562V 0.30 deleterious_low_confidence(0.04) benign(0.028) TCGA-55-7914-01 5 140241139 140241139 C T AC005609.1 3'UTR 0.17 TCGA-55-7914-01 5 140594323 140594323 A T PCDHB13 Missense_Mutation p.R210W 0.10 deleterious_low_confidence(0) benign(0.002) TCGA-55-7914-01 5 140788211 140788211 G T PCDHGB6 Missense_Mutation p.A148S 0.21 deleterious(0.04) benign(0.026) TCGA-55-7914-01 5 140802012 140802012 A T PCDHGA11 Silent p.I406I 0.14 TCGA-55-7914-01 5 140865903 140865903 G A PCDHGC4 Missense_Mutation p.R388H 0.23 tolerated(0.16) benign(0.058) TCGA-55-7914-01 5 151208514 151208514 G T GLRA1 Missense_Mutation p.L343I 0.29 tolerated(0.31) benign(0.033) TCGA-55-7914-01 5 154394386 154394386 A G KIF4B Missense_Mutation p.T323A 0.17 deleterious(0) possibly_damaging(0.838) TCGA-55-7914-01 5 71493280 71493280 T C MAP1B Silent p.S1366S 0.28 TCGA-55-7914-01 5 89783891 89783891 G C POLR3G Missense_Mutation p.L64F 0.18 tolerated(0.2) benign(0.261) TCGA-55-7914-01 5 94860190 94860190 C T TTC37 Silent p.K477K 0.18 TCGA-55-7914-01 6 109871392 109871392 G A AK9 Silent p.A955A 0.37 TCGA-55-7914-01 6 165808737 165808737 C A PDE10A Missense_Mutation p.G480C 0.24 tolerated(0.2) possibly_damaging(0.544) TCGA-55-7914-01 6 26271216 26271216 C A HIST1H3G Missense_Mutation p.G133W 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-7914-01 6 28872087 28872087 C A TRIM27 Missense_Mutation p.Q434H 0.29 tolerated(0.12) probably_damaging(0.934) TCGA-55-7914-01 6 84630848 84630848 T C CYB5R4 Silent p.F204F 0.48 TCGA-55-7914-01 7 100348417 100348417 G C ZAN Silent p.A473A 0.30 TCGA-55-7914-01 7 117417623 117417623 T A CTTNBP2 Missense_Mutation p.N907I 0.24 deleterious(0) probably_damaging(0.999) TCGA-55-7914-01 7 128040196 128040196 C A IMPDH1 Missense_Mutation p.G276V 0.19 deleterious(0) probably_damaging(0.978) TCGA-55-7914-01 7 142162211 142162211 C T TRBV6-6 Missense_Mutation p.G22S 0.24 tolerated(0.09) benign(0.192) TCGA-55-7914-01 7 142180910 142180910 A T TRBV6-5 Missense_Mutation p.L14Q 0.21 deleterious(0) probably_damaging(0.915) TCGA-55-7914-01 7 143175434 143175434 C G TAS2R41 Missense_Mutation p.Q157E 0.20 tolerated(0.06) benign(0.119) TCGA-55-7914-01 7 143633211 143633211 G C OR2F2 Missense_Mutation p.E296Q 0.22 deleterious(0) possibly_damaging(0.833) TCGA-55-7914-01 7 143771421 143771421 A C OR2A25 Missense_Mutation p.I37L 0.31 deleterious(0) benign(0) TCGA-55-7914-01 7 26242643 26242643 G A CBX3 Splice_Site p.X8_splice 0.08 TCGA-55-7914-01 7 31732113 31732113 C A PPP1R17 Missense_Mutation p.L20I 0.30 tolerated_low_confidence(0.3) benign(0.237) TCGA-55-7914-01 7 66764327 66764327 G C Y_RNA 5'Flank 0.25 TCGA-55-7914-01 7 72718748 72718748 G A NSUN5 Nonsense_Mutation p.Q251* 0.23 TCGA-55-7914-01 7 87022269 87022269 G T CROT Missense_Mutation p.G563V 0.19 deleterious(0) probably_damaging(1) TCGA-55-7914-01 8 100866425 100866425 C T VPS13B Missense_Mutation p.A3628V 0.17 deleterious(0.03) possibly_damaging(0.499) TCGA-55-7914-01 8 125487455 125487455 C A RNF139 Missense_Mutation p.D35E 0.08 deleterious(0) probably_damaging(1) TCGA-55-7914-01 8 143846470 143846470 A G LYNX1 Silent p.C81C 0.18 TCGA-55-7914-01 8 145057451 145057451 G A PARP10 Missense_Mutation p.T769I 0.21 tolerated(0.77) benign(0.005) TCGA-55-7914-01 8 145948540 145948540 T A ZNF251 Missense_Mutation p.T169S 0.21 tolerated(0.51) benign(0.292) TCGA-55-7914-01 8 63492112 63492112 G C NKAIN3 Missense_Mutation p.E23D 0.03 deleterious(0) probably_damaging(0.998) TCGA-55-7914-01 8 72127907 72127907 C A EYA1 Missense_Mutation p.A473S 0.20 tolerated(0.2) benign(0.005) TCGA-55-7914-01 8 77768313 77768313 G C ZFHX4 Silent p.P3052P 0.08 TCGA-55-7914-01 8 97847327 97847327 G A CPQ Missense_Mutation p.R187Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-55-7914-01 8 99441351 99441351 C A KCNS2 Missense_Mutation p.P382T 0.15 deleterious(0) probably_damaging(0.999) TCGA-55-7914-01 9 125681304 125681304 C A ZBTB26 Missense_Mutation p.G304C 0.41 deleterious(0) possibly_damaging(0.815) TCGA-55-7914-01 9 14776076 14776076 C A FREM1 Missense_Mutation p.G1523V 0.24 tolerated(0.76) benign(0.004) TCGA-55-7914-01 9 21334009 21334009 G C KLHL9 Missense_Mutation p.P284A 0.30 tolerated(0.07) probably_damaging(0.996) TCGA-55-7914-01 9 37857288 37857288 T A DCAF10 Missense_Mutation p.C369S 0.20 tolerated(0.59) benign(0.003) TCGA-55-7914-01 X 135432398 135432398 T C GPR112 Missense_Mutation p.L2178P 0.37 tolerated(0.09) benign(0.006) TCGA-55-7914-01 X 15800702 15800702 G T CA5B Missense_Mutation p.R290L 0.23 deleterious(0) probably_damaging(0.967) TCGA-55-7914-01 X 53228025 53228025 C A KDM5C Silent p.L763L 0.12 TCGA-55-7914-01 X 7811610 7811610 G T VCX Missense_Mutation p.K58N 0.10 deleterious(0.01) unknown(0) TCGA-55-7994-01 10 103870879 103870879 G A LDB1 Nonsense_Mutation p.Q66* 0.47 TCGA-55-7994-01 10 104163112 104163112 C A PSD Nonsense_Mutation p.E974* 0.57 TCGA-55-7994-01 10 106959772 106959772 C A SORCS3 Missense_Mutation p.F675L 0.57 tolerated(0.18) benign(0.013) TCGA-55-7994-01 10 108338853 108338853 G T SORCS1 Silent p.L1176L 0.41 TCGA-55-7994-01 10 108458972 108458972 C A SORCS1 Missense_Mutation p.E471D 0.42 deleterious(0) possibly_damaging(0.562) TCGA-55-7994-01 10 112340735 112340735 A T SMC3 Missense_Mutation p.Y168F 0.56 deleterious(0.02) possibly_damaging(0.669) TCGA-55-7994-01 10 114192139 114192139 A T ZDHHC6 Silent p.G362G 0.05 TCGA-55-7994-01 10 114799814 114799814 G A TCF7L2 Missense_Mutation p.V161I 0.48 tolerated(0.12) probably_damaging(0.936) TCGA-55-7994-01 10 115338513 115338513 G T HABP2 Missense_Mutation p.M232I 0.45 deleterious(0) benign(0.345) TCGA-55-7994-01 10 115534717 115534717 C A PLEKHS1 Silent p.A298A 0.54 TCGA-55-7994-01 10 127787005 127787005 G T ADAM12 Missense_Mutation p.Q329K 0.44 deleterious(0.02) benign(0.381) TCGA-55-7994-01 10 131557534 131557534 C T MGMT Nonsense_Mutation p.Q146* 0.49 TCGA-55-7994-01 10 134626392 134626392 C A TTC40 Missense_Mutation p.Q2466H 0.47 deleterious(0) benign(0.366) TCGA-55-7994-01 10 135203147 135203147 G T PAOX Missense_Mutation p.A430S 0.58 tolerated(0.47) benign(0.128) TCGA-55-7994-01 10 14816274 14816274 G T FAM107B Missense_Mutation p.P130Q 0.44 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-55-7994-01 10 18331721 18331721 C A SLC39A12 Missense_Mutation p.L679I 0.25 deleterious(0.03) possibly_damaging(0.681) TCGA-55-7994-01 10 18828186 18828186 C T CACNB2 Missense_Mutation p.R506C 0.21 tolerated(0.07) possibly_damaging(0.582) TCGA-55-7994-01 10 21101712 21101712 G A NEBL Missense_Mutation p.P835L 0.24 tolerated(0.06) probably_damaging(0.98) TCGA-55-7994-01 10 26512868 26512870 AGC - GAD2 In_Frame_Del p.A193del 0.31 TCGA-55-7994-01 10 30915808 30915808 G A LYZL2 Silent p.L59L 0.20 TCGA-55-7994-01 10 31134022 31134022 C A ZNF438 Silent p.L785L 0.22 TCGA-55-7994-01 10 34558795 34558795 C A PARD3 Missense_Mutation p.R1073L 0.24 deleterious(0) probably_damaging(0.996) TCGA-55-7994-01 10 35484948 35484948 G A CREM Intron 0.28 TCGA-55-7994-01 10 37414868 37414868 C A ANKRD30A 5'UTR 0.23 TCGA-55-7994-01 10 37414869 37414869 C A ANKRD30A 5'UTR 0.22 TCGA-55-7994-01 10 37414870 37414870 G A ANKRD30A 5'UTR 0.22 TCGA-55-7994-01 10 37490203 37490203 C A ANKRD30A Missense_Mutation p.P884H 0.33 deleterious(0.05) benign(0.326) TCGA-55-7994-01 10 37490204 37490204 C T ANKRD30A Silent p.P884P 0.34 TCGA-55-7994-01 10 38121492 38121492 T A ZNF248 Missense_Mutation p.H264L 0.33 tolerated(0.1) benign(0.001) TCGA-55-7994-01 10 43289422 43289422 G A BMS1 Silent p.E404E 0.18 TCGA-55-7994-01 10 43701430 43701430 G T RASGEF1A Silent p.L45L 0.12 TCGA-55-7994-01 10 44873302 44873302 G C CXCL12 Silent p.A106A 0.80 TCGA-55-7994-01 10 46245583 46245583 G T FAM21C Missense_Mutation p.G258C 0.48 tolerated(0.07) probably_damaging(0.998) TCGA-55-7994-01 10 50121474 50121474 G T LRRC18 Missense_Mutation p.P243T 0.54 deleterious(0.03) probably_damaging(0.932) TCGA-55-7994-01 10 50824639 50824639 T A CHAT Missense_Mutation p.S126R 0.55 tolerated(0.08) benign(0.003) TCGA-55-7994-01 10 52913082 52913082 T A PRKG1 Missense_Mutation p.V157D 0.49 deleterious(0) probably_damaging(1) TCGA-55-7994-01 10 53458951 53458951 T A CSTF2T Missense_Mutation p.D120V 0.53 tolerated(0.17) possibly_damaging(0.787) TCGA-55-7994-01 10 60566378 60566378 C T BICC1 Missense_Mutation p.T739I 0.45 deleterious(0.01) probably_damaging(0.991) TCGA-55-7994-01 10 61829077 61829077 C G ANK3 Missense_Mutation p.K3854N 0.54 benign(0.017) TCGA-55-7994-01 10 6261529 6261529 C G PFKFB3 Intron 0.08 TCGA-55-7994-01 10 67829202 67829202 C A CTNNA3 Nonsense_Mutation p.E675* 0.38 TCGA-55-7994-01 10 68687890 68687890 C A LRRTM3 Missense_Mutation p.P406T 0.37 tolerated(0.13) benign(0.004) TCGA-55-7994-01 10 68687891 68687891 C A LRRTM3 Missense_Mutation p.P406Q 0.37 tolerated(0.05) benign(0.158) TCGA-55-7994-01 10 70700858 70700858 G C DDX50 Missense_Mutation p.D600H 0.20 tolerated(0.16) benign(0.008) TCGA-55-7994-01 10 71332522 71332522 C T NEUROG3 Missense_Mutation p.R93H 0.18 deleterious(0) probably_damaging(1) TCGA-55-7994-01 10 72630895 72630895 G A SGPL1 Missense_Mutation p.V301M 0.58 deleterious(0.05) probably_damaging(0.981) TCGA-55-7994-01 10 73990158 73990158 T C ANAPC16 Silent p.F59F 0.52 TCGA-55-7994-01 10 74810857 74810857 T A P4HA1 Missense_Mutation p.E285V 0.05 deleterious(0) possibly_damaging(0.821) TCGA-55-7994-01 10 75567302 75567302 T C NDST2 Missense_Mutation p.H282R 0.46 deleterious(0.05) benign(0.21) TCGA-55-7994-01 10 79581114 79581114 G A DLG5 Missense_Mutation p.P1043L 0.47 deleterious(0) probably_damaging(0.94) TCGA-55-7994-01 10 81058294 81058294 G T ZMIZ1 Silent p.P541P 0.36 TCGA-55-7994-01 10 85984181 85984181 C A LRIT2 Missense_Mutation p.G267V 0.50 deleterious(0) probably_damaging(0.998) TCGA-55-7994-01 10 87484118 87484118 C T GRID1 Missense_Mutation p.V617I 0.44 deleterious(0.01) probably_damaging(0.997) TCGA-55-7994-01 10 88417887 88417887 G A OPN4 Missense_Mutation p.S141N 0.44 tolerated(0.85) benign(0.132) TCGA-55-7994-01 10 88717357 88717357 C A MMRN2 5'UTR 0.68 TCGA-55-7994-01 10 95553020 95553020 G T LGI1 Missense_Mutation p.V251F 0.58 deleterious(0.01) probably_damaging(0.986) TCGA-55-7994-01 11 101762182 101762182 C G ANGPTL5 Missense_Mutation p.G332A 0.25 deleterious(0.02) probably_damaging(1) TCGA-55-7994-01 11 102584178 102584178 A T MMP8 Missense_Mutation p.H435Q 0.32 deleterious(0) benign(0.003) TCGA-55-7994-01 11 102587108 102587108 G T MMP8 Missense_Mutation p.P276H 0.32 deleterious(0) probably_damaging(1) TCGA-55-7994-01 11 105923999 105923999 G A KBTBD3 Missense_Mutation p.L473F 0.24 deleterious(0) probably_damaging(0.992) TCGA-55-7994-01 11 107969145 107969145 G A CUL5 Silent p.K679K 0.28 TCGA-55-7994-01 11 109294493 109294493 C G C11orf87 Missense_Mutation p.T45S 0.38 deleterious(0.03) probably_damaging(0.987) TCGA-55-7994-01 11 110023687 110023687 G T ZC3H12C Missense_Mutation p.A273S 0.26 deleterious(0.03) possibly_damaging(0.771) TCGA-55-7994-01 11 110327749 110327749 C G FDX1 Missense_Mutation p.L140V 0.29 deleterious(0) probably_damaging(0.997) TCGA-55-7994-01 11 111228178 111228178 T A POU2AF1 Missense_Mutation p.N150Y 0.31 deleterious(0.01) probably_damaging(0.974) TCGA-55-7994-01 11 111946290 111946290 G T C11orf57 Splice_Site 0.32 TCGA-55-7994-01 11 111951224 111951224 C G C11orf57 Missense_Mutation p.L88V 0.04 tolerated(0.22) probably_damaging(0.998) TCGA-55-7994-01 11 113078066 113078066 G T NCAM1 Nonsense_Mutation p.E297* 0.26 TCGA-55-7994-01 11 113078637 113078637 G T NCAM1 Missense_Mutation p.V336L 0.36 deleterious(0) benign(0.038) TCGA-55-7994-01 11 113102391 113102391 C A NCAM1 Missense_Mutation p.R421S 0.34 tolerated(0.05) benign(0.025) TCGA-55-7994-01 11 113111531 113111531 C A NCAM1 Intron 0.26 TCGA-55-7994-01 11 113140812 113140812 C A NCAM1 Intron 0.33 TCGA-55-7994-01 11 113283509 113283509 G T DRD2 Missense_Mutation p.H303N 0.27 tolerated(0.63) benign(0.012) TCGA-55-7994-01 11 113287652 113287652 C A DRD2 Missense_Mutation p.M155I 0.37 deleterious(0) possibly_damaging(0.739) TCGA-55-7994-01 11 113288785 113288785 G A DRD2 Missense_Mutation p.A120V 0.33 deleterious(0) probably_damaging(0.991) TCGA-55-7994-01 11 113558998 113558998 T G TMPRSS5 Splice_Site p.X454_splice 0.38 TCGA-55-7994-01 11 114442077 114442077 C A NXPE4 Missense_Mutation p.M406I 0.34 tolerated(0.41) benign(0.003) TCGA-55-7994-01 11 117163809 117163809 C T BACE1 Silent p.V267V 0.29 TCGA-55-7994-01 11 117258085 117258085 G A CEP164 Missense_Mutation p.E631K 0.28 tolerated(0.06) benign(0.081) TCGA-55-7994-01 11 118344408 118344408 C T KMT2A Missense_Mutation p.T845I 0.27 benign(0.022) TCGA-55-7994-01 11 118366474 118366474 G T KMT2A Missense_Mutation p.W1808L 0.37 probably_damaging(0.993) TCGA-55-7994-01 11 118403765 118403765 G T TMEM25 Silent p.V172V 0.29 TCGA-55-7994-01 11 119216289 119216289 G T MFRP Missense_Mutation p.P161Q 0.25 deleterious(0) probably_damaging(1) TCGA-55-7994-01 11 119508807 119508807 G A RP11-196E1.3 Intron 0.25 TCGA-55-7994-01 11 121060541 121060541 T A TECTA Missense_Mutation p.C2107S 0.38 deleterious_low_confidence(0) benign(0.041) TCGA-55-7994-01 11 122774868 122774868 G A C11orf63 Missense_Mutation p.E194K 0.38 deleterious(0) probably_damaging(1) TCGA-55-7994-01 11 123676224 123676224 C A OR6M1 Silent p.V278V 0.29 TCGA-55-7994-01 11 123676682 123676682 C A OR6M1 Missense_Mutation p.D126Y 0.42 tolerated(0.21) benign(0.001) TCGA-55-7994-01 11 123676749 123676749 G - OR6M1 Frame_Shift_Del p.L105Wfs*11 0.22 TCGA-55-7994-01 11 123893777 123893777 G T OR10G9 Missense_Mutation p.G20W 0.06 deleterious(0) benign(0.325) TCGA-55-7994-01 11 123893902 123893902 C A OR10G9 Silent p.L61L 0.25 TCGA-55-7994-01 11 123909651 123909651 C A OR10G7 Missense_Mutation p.G20W 0.19 deleterious(0) benign(0.325) TCGA-55-7994-01 11 124252556 124252556 G C OR8B2 Missense_Mutation p.I228M 0.24 tolerated_low_confidence(0.07) probably_damaging(0.966) TCGA-55-7994-01 11 124489663 124489663 C T PANX3 Silent p.I337I 0.27 TCGA-55-7994-01 11 124755027 124755027 G T ROBO4 Silent p.R971R 0.34 TCGA-55-7994-01 11 125237760 125237760 C A PKNOX2 Missense_Mutation p.P36T 0.24 tolerated_low_confidence(0.61) benign(0.001) TCGA-55-7994-01 11 1254379 1254379 C - MUC5B Frame_Shift_Del p.A736Rfs*46 0.30 TCGA-55-7994-01 11 12549441 12549441 A T PARVA Missense_Mutation p.N403I 0.16 deleterious(0.01) possibly_damaging(0.887) TCGA-55-7994-01 11 1265033 1265033 C A MUC5B Missense_Mutation p.T2308K 0.28 unknown(0) TCGA-55-7994-01 11 129993651 129993651 G C APLP2 Missense_Mutation p.C356S 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-55-7994-01 11 132307171 132307171 G T OPCML Missense_Mutation p.S203R 0.29 tolerated(0.16) possibly_damaging(0.852) TCGA-55-7994-01 11 132812881 132812881 G T OPCML Missense_Mutation p.A36D 0.27 tolerated(0.17) possibly_damaging(0.593) TCGA-55-7994-01 11 132812898 132812898 G T OPCML Silent p.P30P 0.28 TCGA-55-7994-01 11 16119217 16119217 G T SOX6 Missense_Mutation p.Q306K 0.38 deleterious(0.02) probably_damaging(0.992) TCGA-55-7994-01 11 17981161 17981161 C A SERGEF Missense_Mutation p.W289C 0.45 deleterious(0) probably_damaging(0.996) TCGA-55-7994-01 11 18158991 18158991 T C MRGPRX3 Missense_Mutation p.I81T 0.55 tolerated(0.09) benign(0.021) TCGA-55-7994-01 11 18793530 18793530 G T PTPN5 5'UTR 0.45 TCGA-55-7994-01 11 21135251 21135251 T A NELL1 Missense_Mutation p.S473T 0.56 tolerated(0.09) benign(0.302) TCGA-55-7994-01 11 2154199 2154199 G T IGF2 3'UTR 0.47 TCGA-55-7994-01 11 2161445 2161445 C A IGF2 Missense_Mutation p.G28W 0.44 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-55-7994-01 11 22647010 22647010 A G FANCF Missense_Mutation p.F116S 0.13 tolerated(0.06) possibly_damaging(0.598) TCGA-55-7994-01 11 24927592 24927592 C A LUZP2 Missense_Mutation p.A151E 0.45 deleterious(0) probably_damaging(0.996) TCGA-55-7994-01 11 30352892 30352892 G T ARL14EP Missense_Mutation p.D133Y 0.49 deleterious(0) possibly_damaging(0.81) TCGA-55-7994-01 11 30601981 30601981 A G MPPED2 5'UTR 0.45 TCGA-55-7994-01 11 31349726 31349726 T C DCDC1 Silent p.E34E 0.21 TCGA-55-7994-01 11 33361044 33361044 A G HIPK3 Missense_Mutation p.N526S 0.29 tolerated(0.06) benign(0.005) TCGA-55-7994-01 11 33566721 33566721 C A KIAA1549L Missense_Mutation p.P764H 0.47 deleterious(0) probably_damaging(0.982) TCGA-55-7994-01 11 40136566 40136566 C A LRRC4C Missense_Mutation p.C426F 0.50 deleterious(0) probably_damaging(0.998) TCGA-55-7994-01 11 44297061 44297061 G T ALX4 Missense_Mutation p.A205D 0.47 deleterious(0) benign(0.104) TCGA-55-7994-01 11 4470977 4470977 G A OR52K2 Silent p.K136K 0.41 TCGA-55-7994-01 11 4471274 4471274 C G OR52K2 Silent p.A235A 0.53 TCGA-55-7994-01 11 44956553 44956553 A G TP53I11 Missense_Mutation p.L151P 0.41 deleterious(0) possibly_damaging(0.883) TCGA-55-7994-01 11 4510516 4510516 G A OR52K1 Missense_Mutation p.C129Y 0.12 deleterious(0) probably_damaging(0.984) TCGA-55-7994-01 11 4510542 4510542 C A OR52K1 Missense_Mutation p.L138M 0.43 deleterious(0.01) probably_damaging(0.98) TCGA-55-7994-01 11 4593468 4593468 G C C11orf40 Missense_Mutation p.P122R 0.06 tolerated_low_confidence(0.15) benign(0) TCGA-55-7994-01 11 45935430 45935430 C A PEX16 Missense_Mutation p.R276L 0.45 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 11 4594592 4594592 C A C11orf40 Missense_Mutation p.M84I 0.49 deleterious_low_confidence(0) benign(0.043) TCGA-55-7994-01 11 4661876 4661876 G T OR51D1 Missense_Mutation p.V286L 0.48 tolerated(0.05) possibly_damaging(0.817) TCGA-55-7994-01 11 46893082 46893082 G A LRP4 Silent p.L1562L 0.44 TCGA-55-7994-01 11 46900520 46900520 C T LRP4 Missense_Mutation p.G1025E 0.25 tolerated(0.16) benign(0.032) TCGA-55-7994-01 11 48238768 48238768 G A OR4B1 Missense_Mutation p.R136H 0.53 tolerated(0.12) benign(0.006) TCGA-55-7994-01 11 48346737 48346737 C A OR4C3 Missense_Mutation p.S82Y 0.29 deleterious(0.01) probably_damaging(0.973) TCGA-55-7994-01 11 49178339 49178339 C G FOLH1 Missense_Mutation p.G518A 0.29 deleterious(0) probably_damaging(0.95) TCGA-55-7994-01 11 49178340 49178340 C A FOLH1 Nonsense_Mutation p.G518* 0.29 TCGA-55-7994-01 11 49598273 49598273 A T RP11-707M1.1 RNA 0.48 TCGA-55-7994-01 11 4976326 4976326 G A OR51A2 Silent p.L206L 0.46 TCGA-55-7994-01 11 49805499 49805499 G A RP11-707M1.1 RNA 0.45 TCGA-55-7994-01 11 5247899 5247899 C A HBB Missense_Mutation p.G75C 0.38 deleterious(0) possibly_damaging(0.755) TCGA-55-7994-01 11 5248264 5248264 A T HBB 5'UTR 0.44 TCGA-55-7994-01 11 5291044 5291044 C A HBE1 Missense_Mutation p.G26V 0.48 tolerated(0.1) probably_damaging(0.985) TCGA-55-7994-01 11 55038351 55038351 C A TRIM48 3'UTR 0.78 TCGA-55-7994-01 11 55065336 55065336 C A TRIM51HP RNA 0.12 TCGA-55-7994-01 11 5510151 5510151 C T OR52D1 Missense_Mutation p.T72I 0.47 tolerated(0.72) possibly_damaging(0.851) TCGA-55-7994-01 11 55541066 55541066 C G OR5D13 Missense_Mutation p.I51M 0.17 deleterious(0.02) benign(0.291) TCGA-55-7994-01 11 55587491 55587491 A G OR5D18 Missense_Mutation p.N129S 0.25 tolerated(0.06) benign(0.014) TCGA-55-7994-01 11 55594985 55594985 C A OR5L2 Nonsense_Mutation p.C97* 0.22 TCGA-55-7994-01 11 55606523 55606524 - T OR5D16 Frame_Shift_Ins p.L100Ffs*14 0.32 TCGA-55-7994-01 11 55606682 55606682 C G OR5D16 Missense_Mutation p.A152G 0.44 tolerated(0.21) possibly_damaging(0.515) TCGA-55-7994-01 11 55607012 55607012 G T OR5D16 Missense_Mutation p.C262F 0.44 deleterious(0.01) probably_damaging(0.936) TCGA-55-7994-01 11 55607014 55607014 G T OR5D16 Missense_Mutation p.V263L 0.46 deleterious(0.02) possibly_damaging(0.612) TCGA-55-7994-01 11 55735698 55735698 C A OR10AG1 Missense_Mutation p.G81V 0.20 deleterious(0.02) possibly_damaging(0.543) TCGA-55-7994-01 11 55860945 55860945 G C OR8I2 Missense_Mutation p.Q54H 0.25 deleterious(0.05) benign(0.004) TCGA-55-7994-01 11 55861458 55861458 G T OR8I2 Silent p.L225L 0.46 TCGA-55-7994-01 11 55926946 55926946 G T OR8K5 Missense_Mutation p.P283H 0.46 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-7994-01 11 55944704 55944704 G T OR5J2 Missense_Mutation p.G204V 0.43 deleterious(0.02) benign(0.378) TCGA-55-7994-01 11 56020019 56020019 T A OR5T3 Missense_Mutation p.F115Y 0.55 deleterious(0.03) benign(0.126) TCGA-55-7994-01 11 56344787 56344787 G C OR5M10 Silent p.S137S 0.29 TCGA-55-7994-01 11 56344812 56344812 G T OR5M10 Missense_Mutation p.P129H 0.49 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 11 56431207 56431207 G T OR5AR1 Missense_Mutation p.G16C 0.04 deleterious(0) probably_damaging(1) TCGA-55-7994-01 11 56757145 56757145 G C OR5AK2 Missense_Mutation p.G253R 0.50 deleterious(0) probably_damaging(0.993) TCGA-55-7994-01 11 57003841 57003841 G C APLNR Missense_Mutation p.P213R 0.23 deleterious(0) probably_damaging(1) TCGA-55-7994-01 11 57574390 57574390 A G CTNND1 Missense_Mutation p.K633R 0.11 tolerated(0.25) benign(0.082) TCGA-55-7994-01 11 57798776 57798776 C G OR6Q1 Missense_Mutation p.L118V 0.22 deleterious(0.01) probably_damaging(0.978) TCGA-55-7994-01 11 58034395 58034395 G T OR10W1 3'UTR 0.51 TCGA-55-7994-01 11 58275102 58275102 T A OR5B21 Silent p.A159A 0.45 TCGA-55-7994-01 11 58391837 58391837 G T CNTF Missense_Mutation p.G149C 0.50 tolerated(0.06) benign(0.037) TCGA-55-7994-01 11 58602171 58602171 C A GLYATL2 Missense_Mutation p.G206C 0.25 deleterious(0) probably_damaging(0.985) TCGA-55-7994-01 11 5878369 5878369 C A OR52E8 Missense_Mutation p.M188I 0.46 tolerated(0.1) possibly_damaging(0.58) TCGA-55-7994-01 11 59245365 59245365 C T OR4D10 Missense_Mutation p.H155Y 0.31 deleterious(0.01) probably_damaging(1) TCGA-55-7994-01 11 59940467 59940467 G T MS4A6A 3'UTR 0.39 TCGA-55-7994-01 11 608231 608231 C A PHRF1 Missense_Mutation p.S924R 0.40 tolerated(0.37) benign(0.006) TCGA-55-7994-01 11 61017438 61017438 C T PGA5 Silent p.T323T 0.28 TCGA-55-7994-01 11 61404464 61404464 A T RPLP0P2 RNA 0.26 TCGA-55-7994-01 11 61544867 61544867 C A MYRF Missense_Mutation p.H574Q 0.17 tolerated(0.11) probably_damaging(0.954) TCGA-55-7994-01 11 62293114 62293114 G C AHNAK Silent p.V2925V 0.27 TCGA-55-7994-01 11 62295024 62295024 C G AHNAK Missense_Mutation p.E2289Q 0.37 probably_damaging(0.993) TCGA-55-7994-01 11 62389441 62389441 C G B3GAT3 5'UTR 0.40 TCGA-55-7994-01 11 62389442 62389442 G A B3GAT3 5'UTR 0.41 TCGA-55-7994-01 11 62744805 62744805 G T SLC22A6 Missense_Mutation p.S472R 0.46 deleterious(0) probably_damaging(1) TCGA-55-7994-01 11 63137661 63137664 CCTG TAC SLC22A9 Frame_Shift_Del p.P45Yfs*29 0.22 TCGA-55-7994-01 11 64359360 64359360 C A SLC22A12 Missense_Mutation p.A111D 0.34 deleterious(0.02) benign(0.393) TCGA-55-7994-01 11 64368242 64368242 G A SLC22A12 Missense_Mutation p.R477H 0.33 deleterious(0) probably_damaging(0.985) TCGA-55-7994-01 11 64402851 64402851 G T NRXN2 Missense_Mutation p.S1159R 0.34 deleterious(0.03) probably_damaging(0.958) TCGA-55-7994-01 11 64507485 64507485 C A RASGRP2 Silent p.L174L 0.32 TCGA-55-7994-01 11 64563827 64563827 C A MAP4K2 Missense_Mutation p.G557C 0.31 deleterious(0) probably_damaging(0.971) TCGA-55-7994-01 11 64602859 64602859 A T CDC42BPG Missense_Mutation p.L638Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 11 64673642 64673642 C G ATG2A Missense_Mutation p.L1069F 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-55-7994-01 11 64893330 64893330 G T MRPL49 Nonsense_Mutation p.E163* 0.14 TCGA-55-7994-01 11 64981476 64981476 G T CAPN1 3'Flank 0.34 TCGA-55-7994-01 11 65390965 65390965 G C PCNXL3 Silent p.T787T 0.35 TCGA-55-7994-01 11 65647322 65647322 C A CTSW 5'UTR 0.23 TCGA-55-7994-01 11 65650961 65650961 T C CTSW Intron 0.13 TCGA-55-7994-01 11 65653836 65653836 C - FIBP Frame_Shift_Del p.D157Tfs*38 0.27 TCGA-55-7994-01 11 65793808 65793808 C T CATSPER1 Missense_Mutation p.D15N 0.25 tolerated(0.12) possibly_damaging(0.665) TCGA-55-7994-01 11 66043553 66043553 G T RAB1B Silent p.T150T 0.40 TCGA-55-7994-01 11 66192567 66192567 C A NPAS4 Missense_Mutation p.P736T 0.41 tolerated(0.09) possibly_damaging(0.879) TCGA-55-7994-01 11 66360264 66360264 C A CCDC87 Missense_Mutation p.V75L 0.40 tolerated(0.09) benign(0.026) TCGA-55-7994-01 11 6650723 6650723 C A DCHS1 Silent p.R1707R 0.48 TCGA-55-7994-01 11 67208691 67208691 C A CORO1B Missense_Mutation p.A221S 0.30 tolerated(0.61) benign(0.002) TCGA-55-7994-01 11 67218940 67218940 G T GPR152 Missense_Mutation p.A419D 0.28 tolerated_low_confidence(0.08) benign(0.009) TCGA-55-7994-01 11 6806708 6806708 C T OR2AG1 Missense_Mutation p.T147M 0.48 deleterious(0.02) benign(0.305) TCGA-55-7994-01 11 6942516 6942516 C A OR2D3 Missense_Mutation p.P95H 0.34 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 11 7335023 7335023 G A SYT9 Missense_Mutation p.E299K 0.43 tolerated(0.88) benign(0.065) TCGA-55-7994-01 11 73849762 73849762 T A C2CD3 Intron 0.29 TCGA-55-7994-01 11 73988087 73988087 C A P4HA3 Silent p.L426L 0.32 TCGA-55-7994-01 11 76834850 76834850 G T CAPN5 Missense_Mutation p.Q619H 0.27 tolerated(0.09) benign(0.221) TCGA-55-7994-01 11 76853800 76853800 G T MYO7A Missense_Mutation p.V22L 0.38 deleterious(0.04) probably_damaging(0.953) TCGA-55-7994-01 11 7982410 7982410 C A NLRP10 Missense_Mutation p.G250V 0.39 deleterious(0) probably_damaging(0.974) TCGA-55-7994-01 11 82877020 82877020 G T PCF11 Missense_Mutation p.D361Y 0.26 deleterious(0) probably_damaging(0.956) TCGA-55-7994-01 11 82935923 82935923 C A ANKRD42 Missense_Mutation p.L177I 0.25 tolerated(0.07) probably_damaging(0.999) TCGA-55-7994-01 11 85431930 85431930 C A SYTL2 Missense_Mutation p.S833I 0.24 deleterious(0) probably_damaging(0.997) TCGA-55-7994-01 11 85435690 85435690 G A SYTL2 Missense_Mutation p.L604F 0.13 deleterious(0) possibly_damaging(0.894) TCGA-55-7994-01 11 85436501 85436501 C G SYTL2 Missense_Mutation p.Q333H 0.31 deleterious(0) possibly_damaging(0.843) TCGA-55-7994-01 11 88780700 88780700 C A GRM5 Missense_Mutation p.R114I 0.27 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 11 89135564 89135564 G T NOX4 Missense_Mutation p.A259E 0.24 tolerated(1) benign(0) TCGA-55-7994-01 11 89537462 89537462 G A TRIM49 Missense_Mutation p.T59I 0.15 tolerated(0.14) benign(0.001) TCGA-55-7994-01 11 89896511 89896511 C A NAALAD2 Missense_Mutation p.S370Y 0.32 deleterious(0) probably_damaging(0.993) TCGA-55-7994-01 11 92088531 92088531 G C FAT3 Missense_Mutation p.G1085R 0.26 probably_damaging(1) TCGA-55-7994-01 11 92538342 92538342 G T FAT3 Missense_Mutation p.A2974S 0.30 benign(0.192) TCGA-55-7994-01 11 92715248 92715248 G T MTNR1B Nonsense_Mutation p.E287* 0.33 TCGA-55-7994-01 11 93127763 93127763 C A CCDC67 Missense_Mutation p.L394M 0.28 deleterious(0.04) possibly_damaging(0.857) TCGA-55-7994-01 11 94602640 94602640 T A AMOTL1 Splice_Site p.X922_splice 0.44 TCGA-55-7994-01 11 96074881 96074881 C A MAML2 Missense_Mutation p.R60L 0.31 probably_damaging(0.913) TCGA-55-7994-01 12 100723014 100723014 G A SCYL2 Missense_Mutation p.G560R 0.57 deleterious(0) possibly_damaging(0.882) TCGA-55-7994-01 12 101682746 101682746 G T UTP20 Missense_Mutation p.S175I 0.49 deleterious(0) possibly_damaging(0.703) TCGA-55-7994-01 12 101723139 101723139 A G UTP20 Missense_Mutation p.H1110R 0.62 tolerated(0.1) probably_damaging(0.942) TCGA-55-7994-01 12 104131469 104131469 G C STAB2 Missense_Mutation p.D1870H 0.17 deleterious(0) probably_damaging(0.92) TCGA-55-7994-01 12 106477704 106477704 C A NUAK1 Missense_Mutation p.G173C 0.76 deleterious(0) probably_damaging(0.995) TCGA-55-7994-01 12 109700163 109700163 G T ACACB Missense_Mutation p.G2226C 0.60 deleterious(0) probably_damaging(0.982) TCGA-55-7994-01 12 110780131 110780131 G T ATP2A2 Missense_Mutation p.M732I 0.66 deleterious(0.01) benign(0.325) TCGA-55-7994-01 12 111352024 111352024 A T MYL2 Silent p.T80T 0.71 TCGA-55-7994-01 12 113407441 113407441 A T OAS3 Missense_Mutation p.T1045S 0.69 deleterious(0) probably_damaging(0.993) TCGA-55-7994-01 12 113706674 113706674 G T TPCN1 Missense_Mutation p.R291L 0.60 deleterious(0) possibly_damaging(0.765) TCGA-55-7994-01 12 115117391 115117391 C G TBX3 Missense_Mutation p.L261F 0.04 deleterious(0.05) probably_damaging(0.998) TCGA-55-7994-01 12 119568484 119568484 C T SRRM4 Missense_Mutation p.H206Y 0.12 tolerated_low_confidence(0.06) unknown(0) TCGA-55-7994-01 12 120616755 120616755 T A GCN1L1 Splice_Site p.X143_splice 0.61 TCGA-55-7994-01 12 122625581 122625581 G T MLXIP Silent p.T863T 0.80 TCGA-55-7994-01 12 124158352 124158352 C G TCTN2 Missense_Mutation p.A153G 0.59 tolerated(0.29) benign(0.015) TCGA-55-7994-01 12 124862823 124862823 G A NCOR2 Silent p.G709G 0.14 TCGA-55-7994-01 12 129559312 129559312 T G TMEM132D Missense_Mutation p.N803T 0.10 tolerated(0.14) benign(0.003) TCGA-55-7994-01 12 130919330 130919330 C G RIMBP2 Missense_Mutation p.R717S 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-55-7994-01 12 133384999 133384999 C T GOLGA3 Missense_Mutation p.R219Q 0.67 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-55-7994-01 12 13716478 13716478 G C GRIN2B Missense_Mutation p.Q1232E 0.59 tolerated(0.71) benign(0.12) TCGA-55-7994-01 12 16135363 16135363 G A DERA Missense_Mutation p.M210I 0.14 deleterious(0.01) probably_damaging(0.968) TCGA-55-7994-01 12 1748912 1748912 C T WNT5B Missense_Mutation p.R131W 0.30 deleterious(0) probably_damaging(0.974) TCGA-55-7994-01 12 26774108 26774108 T A ITPR2 Missense_Mutation p.E1137V 0.58 tolerated(0.13) benign(0.147) TCGA-55-7994-01 12 2910447 2910447 G A FKBP4 Silent p.R399R 0.18 TCGA-55-7994-01 12 39735871 39735871 C A KIF21A Missense_Mutation p.G590C 0.52 tolerated(0.05) benign(0.376) TCGA-55-7994-01 12 39761691 39761691 T C KIF21A Silent p.E198E 0.06 TCGA-55-7994-01 12 46245090 46245090 C T ARID2 Nonsense_Mutation p.Q1062* 0.58 TCGA-55-7994-01 12 48380960 48380960 C A COL2A1 Splice_Site p.X423_splice 0.62 TCGA-55-7994-01 12 50190208 50190208 G A NCKAP5L Nonsense_Mutation p.Q479* 0.52 TCGA-55-7994-01 12 51685715 51685715 C G BIN2 Missense_Mutation p.R392P 0.51 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-55-7994-01 12 52844258 52844258 C T KRT6B Silent p.V229V 0.07 TCGA-55-7994-01 12 53819601 53819601 A T AMHR2 Silent p.P250P 0.63 TCGA-55-7994-01 12 54339080 54339080 C T HOXC13 3'UTR 0.59 TCGA-55-7994-01 12 54350232 54350232 G A HOXC12 Missense_Mutation p.R244Q 0.60 deleterious(0) probably_damaging(0.984) TCGA-55-7994-01 12 54379778 54379778 G T HOXC10 Silent p.S245S 0.48 TCGA-55-7994-01 12 54737029 54737029 G T COPZ1 Missense_Mutation p.G64C 0.56 deleterious(0) probably_damaging(0.997) TCGA-55-7994-01 12 55714963 55714963 G T OR6C1 Nonsense_Mutation p.E194* 0.54 TCGA-55-7994-01 12 57960917 57960917 T A KIF5A Silent p.T170T 0.55 TCGA-55-7994-01 12 57966430 57966430 G A KIF5A Missense_Mutation p.R546Q 0.14 deleterious(0) probably_damaging(0.996) TCGA-55-7994-01 12 6091124 6091124 G A VWF Missense_Mutation p.P2372L 0.23 tolerated(0.13) possibly_damaging(0.908) TCGA-55-7994-01 12 69653262 69653262 G T CPSF6 Missense_Mutation p.M418I 0.51 deleterious(0.01) possibly_damaging(0.838) TCGA-55-7994-01 12 70048655 70048655 G T BEST3 3'UTR 0.64 TCGA-55-7994-01 12 71977947 71977947 G A LGR5 Silent p.E719E 0.70 TCGA-55-7994-01 12 71978407 71978407 A T LGR5 Missense_Mutation p.S873C 0.57 deleterious(0) possibly_damaging(0.664) TCGA-55-7994-01 12 75601274 75601274 C A KCNC2 Nonsense_Mutation p.E164* 0.62 TCGA-55-7994-01 12 7633775 7633775 C A CD163 Missense_Mutation p.D1109Y 0.62 deleterious(0.01) possibly_damaging(0.839) TCGA-55-7994-01 12 78225104 78225104 T C NAV3 5'UTR 0.80 TCGA-55-7994-01 12 78400510 78400510 C - NAV3 Frame_Shift_Del p.R398Afs*33 0.38 TCGA-55-7994-01 12 78531013 78531013 A C NAV3 Missense_Mutation p.N1500H 0.67 tolerated(0.27) possibly_damaging(0.788) TCGA-55-7994-01 12 81283038 81283038 T C LIN7A Missense_Mutation p.I65V 0.67 tolerated(1) benign(0.002) TCGA-55-7994-01 12 9002313 9002313 G T A2ML1 Missense_Mutation p.D693Y 0.24 deleterious(0.01) benign(0.322) TCGA-55-7994-01 12 91365617 91365617 T C EPYC Missense_Mutation p.N221S 0.15 deleterious(0) probably_damaging(1) TCGA-55-7994-01 12 9334659 9334659 G T PZP Missense_Mutation p.A534E 0.59 deleterious(0) possibly_damaging(0.659) TCGA-55-7994-01 12 97043710 97043710 G T C12orf55 Missense_Mutation p.D1578Y 0.42 deleterious(0.03) possibly_damaging(0.534) TCGA-55-7994-01 13 108863581 108863581 A T LIG4 Silent p.S12S 0.45 TCGA-55-7994-01 13 110830419 110830419 C G COL4A1 Missense_Mutation p.G873A 0.42 benign(0.085) TCGA-55-7994-01 13 111114638 111114638 G C COL4A2 Missense_Mutation p.Q561H 0.17 benign(0.076) TCGA-55-7994-01 13 113826154 113826154 C G PROZ Missense_Mutation p.S335W 0.39 tolerated(0.06) benign(0.045) TCGA-55-7994-01 13 28498625 28498625 A T PDX1 Silent p.T213T 0.67 TCGA-55-7994-01 13 32802630 32802630 G T FRY Silent p.P1748P 0.49 TCGA-55-7994-01 13 33226115 33226115 G - PDS5B Frame_Shift_Del p.A95Lfs*9 0.30 TCGA-55-7994-01 13 37422952 37422952 C T SMAD9 Nonsense_Mutation p.W422* 0.38 TCGA-55-7994-01 13 38153024 38153024 A T POSTN Missense_Mutation p.L640Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 13 38229321 38229321 A G TRPC4 Silent p.V596V 0.47 TCGA-55-7994-01 13 39451300 39451300 A T FREM2 Missense_Mutation p.Y2864F 0.58 tolerated(1) benign(0.002) TCGA-55-7994-01 13 46726969 46726969 A G LCP1 Missense_Mutation p.W229R 0.08 deleterious(0) probably_damaging(1) TCGA-55-7994-01 13 49076876 49076876 C - RCBTB2 Frame_Shift_Del p.W367Cfs*18 0.33 TCGA-55-7994-01 13 52989939 52989939 C A VPS36 3'UTR 0.36 TCGA-55-7994-01 13 53420645 53420645 C A PCDH8 Nonsense_Mutation p.E643* 0.50 TCGA-55-7994-01 13 53624864 53624864 C - OLFM4 Frame_Shift_Del p.L498Ffs*2 0.28 TCGA-55-7994-01 13 77671932 77671932 C A MYCBP2 Missense_Mutation p.K3081N 0.52 probably_damaging(0.989) TCGA-55-7994-01 13 77739436 77739436 C T MYCBP2 Missense_Mutation p.G2106E 0.44 probably_damaging(0.998) TCGA-55-7994-01 14 100610081 100610081 C G EVL 3'UTR 0.29 TCGA-55-7994-01 14 102028697 102028697 G T DIO3 Missense_Mutation p.W288C 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-55-7994-01 14 102891465 102891465 G A TECPR2 Missense_Mutation p.G263E 0.44 tolerated(0.16) benign(0.019) TCGA-55-7994-01 14 105213363 105213363 C A ADSSL1 3'UTR 0.17 TCGA-55-7994-01 14 105409085 105409085 G T AHNAK2 Missense_Mutation p.Q4235K 0.33 possibly_damaging(0.708) TCGA-55-7994-01 14 105410091 105410091 G T AHNAK2 Silent p.V3899V 0.35 TCGA-55-7994-01 14 105420568 105420568 C T AHNAK2 Missense_Mutation p.G407E 0.31 benign(0.039) TCGA-55-7994-01 14 106330819 106330819 C T IGHJ3 Silent p.G9G 0.18 TCGA-55-7994-01 14 19553825 19553825 C T POTEG Nonsense_Mutation p.R137* 0.11 TCGA-55-7994-01 14 19558786 19558786 T A POTEG Nonsense_Mutation p.C197* 0.12 TCGA-55-7994-01 14 20345205 20345205 G T OR4K2 Missense_Mutation p.W260L 0.16 deleterious(0) probably_damaging(1) TCGA-55-7994-01 14 20389262 20389262 T A OR4K5 Missense_Mutation p.L166Q 0.19 deleterious(0) probably_damaging(1) TCGA-55-7994-01 14 21025067 21025067 T C RNASE9 Silent p.T59T 0.26 TCGA-55-7994-01 14 21109395 21109395 C A OR6S1 Silent p.V152V 0.36 TCGA-55-7994-01 14 22090514 22090514 G T TRAV1-1 Silent p.T40T 0.34 TCGA-55-7994-01 14 22217887 22217887 C A TRAV5 Missense_Mutation p.Q80K 0.28 tolerated(1) benign(0.139) TCGA-55-7994-01 14 22392343 22392343 C T TRAV14DV4 Silent p.V10V 0.18 TCGA-55-7994-01 14 23072417 23072417 G T ABHD4 Missense_Mutation p.G79C 0.31 deleterious(0) possibly_damaging(0.519) TCGA-55-7994-01 14 23511538 23511538 C T PSMB11 Missense_Mutation p.P35L 0.32 deleterious(0.02) benign(0.008) TCGA-55-7994-01 14 23512148 23512148 C T PSMB11 Silent p.R238R 0.39 TCGA-55-7994-01 14 23521286 23521286 C A CDH24 Missense_Mutation p.S457I 0.27 deleterious(0.05) benign(0) TCGA-55-7994-01 14 23851228 23851228 A T MYH6 3'UTR 0.11 TCGA-55-7994-01 14 23944502 23944502 G T NGDN Silent p.L89L 0.41 TCGA-55-7994-01 14 24041068 24041068 C T JPH4 Missense_Mutation p.A405T 0.34 tolerated(0.07) probably_damaging(0.977) TCGA-55-7994-01 14 24041069 24041069 C T JPH4 Silent p.E404E 0.35 TCGA-55-7994-01 14 24619890 24619890 G T RNF31 Missense_Mutation p.W427C 0.43 tolerated(0.22) benign(0.003) TCGA-55-7994-01 14 24627384 24627384 G C RNF31 Missense_Mutation p.A959P 0.43 tolerated(0.36) benign(0.006) TCGA-55-7994-01 14 24635347 24635347 C - IRF9 Frame_Shift_Del p.R376Dfs*55 0.26 TCGA-55-7994-01 14 24676331 24676331 C A TSSK4 Silent p.P150P 0.27 TCGA-55-7994-01 14 24884932 24884932 G T NYNRIN Missense_Mutation p.G1326V 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-7994-01 14 25042903 25042903 G T CTSG Silent p.P236P 0.24 TCGA-55-7994-01 14 29237172 29237172 C A FOXG1 Silent p.I229I 0.44 TCGA-55-7994-01 14 31081465 31081465 A G G2E3 Missense_Mutation p.Y518C 0.38 tolerated(0.2) benign(0.009) TCGA-55-7994-01 14 33165317 33165317 G T AKAP6 Splice_Site p.X1000_splice 0.36 TCGA-55-7994-01 14 35470161 35470161 G T SRP54 Nonsense_Mutation p.E64* 0.47 TCGA-55-7994-01 14 38724033 38724033 C G CLEC14A Missense_Mutation p.V399L 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-55-7994-01 14 44973903 44973903 G T FSCB Missense_Mutation p.P763Q 0.49 tolerated(0.23) unknown(0) TCGA-55-7994-01 14 45633769 45633769 G T FANCM Splice_Site p.X596_splice 0.25 TCGA-55-7994-01 14 51288610 51288610 C T NIN Silent p.Q55Q 0.18 TCGA-55-7994-01 14 51352378 51352378 G A ABHD12B Splice_Site p.X178_splice 0.24 TCGA-55-7994-01 14 51444066 51444066 C G TRIM9 Silent p.T692T 0.32 TCGA-55-7994-01 14 52494052 52494052 T A NID2 Silent p.P847P 0.29 TCGA-55-7994-01 14 52494053 52494053 G T NID2 Missense_Mutation p.P847Q 0.28 tolerated(0.17) benign(0.387) TCGA-55-7994-01 14 58924516 58924516 C - KIAA0586 Frame_Shift_Del p.P521Hfs*17 0.19 TCGA-55-7994-01 14 59113649 59113649 A G DACT1 Missense_Mutation p.S770G 0.38 deleterious(0) probably_damaging(0.994) TCGA-55-7994-01 14 60213001 60213001 C A RTN1 Missense_Mutation p.G147V 0.20 deleterious(0.02) possibly_damaging(0.779) TCGA-55-7994-01 14 60749475 60749475 G T PPM1A Missense_Mutation p.Q91H 0.35 tolerated(0.11) benign(0.003) TCGA-55-7994-01 14 64554189 64554189 A T SYNE2 Intron 0.16 TCGA-55-7994-01 14 64634094 64634094 G T SYNE2 Silent p.L5583L 0.15 TCGA-55-7994-01 14 65381189 65381189 G T CHURC1 Missense_Mutation p.R19S 0.20 deleterious_low_confidence(0) benign(0.001) TCGA-55-7994-01 14 68252721 68252721 C A ZFYVE26 Missense_Mutation p.G1053V 0.41 tolerated(0.52) possibly_damaging(0.56) TCGA-55-7994-01 14 68252722 68252722 C G ZFYVE26 Missense_Mutation p.G1053R 0.42 tolerated(0.38) benign(0.067) TCGA-55-7994-01 14 69256951 69256951 C A ZFP36L1 Missense_Mutation p.G106W 0.21 deleterious(0) possibly_damaging(0.885) TCGA-55-7994-01 14 70515484 70515484 C A SLC8A3 Missense_Mutation p.D803Y 0.19 deleterious(0) probably_damaging(1) TCGA-55-7994-01 14 71429034 71429034 G T PCNX Missense_Mutation p.D152Y 0.43 deleterious(0) probably_damaging(0.95) TCGA-55-7994-01 14 73743885 73743885 C A NUMB Missense_Mutation p.A453S 0.28 tolerated(0.08) benign(0.035) TCGA-55-7994-01 14 74823804 74823804 C A VRTN Silent p.A106A 0.36 TCGA-55-7994-01 14 74823805 74823805 C A VRTN Missense_Mutation p.R107S 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-55-7994-01 14 75142625 75142625 C - AREL1 Frame_Shift_Del p.R286Pfs*8 0.26 TCGA-55-7994-01 14 76621204 76621204 G T GPATCH2L Missense_Mutation p.Q166H 0.27 deleterious(0) probably_damaging(0.983) TCGA-55-7994-01 14 76964746 76964746 A G ESRRB Missense_Mutation p.Q416R 0.23 tolerated(0.13) benign(0.034) TCGA-55-7994-01 14 77896091 77896091 T C VIPAS39 Missense_Mutation p.K400R 0.14 tolerated(0.36) benign(0.253) TCGA-55-7994-01 14 81259335 81259335 C A CEP128 Missense_Mutation p.Q443H 0.27 tolerated(0.18) benign(0.023) TCGA-55-7994-01 14 81743644 81743644 G A STON2 Missense_Mutation p.R671W 0.36 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 14 88652419 88652419 G T KCNK10 Missense_Mutation p.S364R 0.33 deleterious(0) possibly_damaging(0.825) TCGA-55-7994-01 14 89168855 89168855 C A EML5 Missense_Mutation p.G725C 0.25 deleterious(0.02) probably_damaging(0.997) TCGA-55-7994-01 14 90798259 90798259 C G NRDE2 5'UTR 0.19 TCGA-55-7994-01 14 93125681 93125681 G T RIN3 Silent p.P734P 0.34 TCGA-55-7994-01 14 94395112 94395112 G A FAM181A Missense_Mutation p.E223K 0.26 tolerated(0.08) possibly_damaging(0.641) TCGA-55-7994-01 14 94754785 94754785 G T SERPINA10 Missense_Mutation p.S277Y 0.19 deleterious(0.04) possibly_damaging(0.504) TCGA-55-7994-01 14 94756526 94756526 G T SERPINA10 Silent p.P135P 0.15 TCGA-55-7994-01 14 95085752 95085752 A C SERPINA3 Missense_Mutation p.E288D 0.13 deleterious(0) possibly_damaging(0.834) TCGA-55-7994-01 14 95942060 95942060 C A SYNE3 Silent p.T33T 0.23 TCGA-55-7994-01 14 96157239 96157239 G C TCL1B Missense_Mutation p.G110A 0.31 tolerated(0.71) possibly_damaging(0.732) TCGA-55-7994-01 14 99183608 99183608 G T C14orf177 Missense_Mutation p.M125I 0.41 deleterious_low_confidence(0) benign(0.043) TCGA-55-7994-01 15 101528857 101528857 G T LRRK1 Missense_Mutation p.R151L 0.48 tolerated(0.16) possibly_damaging(0.642) TCGA-55-7994-01 15 101718987 101718987 C A CHSY1 Missense_Mutation p.V339F 0.61 tolerated(0.54) possibly_damaging(0.854) TCGA-55-7994-01 15 101825949 101825949 C A SNRPA1 Silent p.G199G 0.60 TCGA-55-7994-01 15 102358652 102358653 AG T OR4F15 Frame_Shift_Del p.K88Ifs*29 0.27 TCGA-55-7994-01 15 22368600 22368600 G T OR4M2 Missense_Mutation p.V9L 0.09 deleterious(0.01) benign(0.007) TCGA-55-7994-01 15 22368918 22368918 C T OR4M2 Missense_Mutation p.L115F 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-55-7994-01 15 22383072 22383072 C T OR4N4 Silent p.V200V 0.25 TCGA-55-7994-01 15 23811275 23811275 C G MKRN3 Missense_Mutation p.R116G 0.35 deleterious(0.04) possibly_damaging(0.701) TCGA-55-7994-01 15 23812141 23812141 G A MKRN3 Silent p.A404A 0.24 TCGA-55-7994-01 15 24921592 24921592 G T NPAP1 Missense_Mutation p.G193V 0.42 tolerated(0.06) probably_damaging(0.952) TCGA-55-7994-01 15 24922307 24922307 C A NPAP1 Missense_Mutation p.D431E 0.33 tolerated(0.2) benign(0.1) TCGA-55-7994-01 15 25456951 25456951 G T SNORD115-23 RNA 0.16 TCGA-55-7994-01 15 25468289 25468289 C A SNORD115-27 3'Flank 0.32 TCGA-55-7994-01 15 25474179 25474179 G C SNORD115-32 RNA 0.32 TCGA-55-7994-01 15 28356956 28356956 C - HERC2 Frame_Shift_Del p.D4820Tfs*12 0.30 TCGA-55-7994-01 15 33895366 33895366 C G RYR3 Silent p.A655A 0.08 TCGA-55-7994-01 15 34023798 34023798 G C RYR3 Missense_Mutation p.D2443H 0.08 probably_damaging(1) TCGA-55-7994-01 15 34140600 34140600 G C RYR3 Missense_Mutation p.D4536H 0.34 possibly_damaging(0.76) TCGA-55-7994-01 15 35044820 35044820 C A GJD2 Silent p.L275L 0.37 TCGA-55-7994-01 15 39874446 39874446 C T THBS1 Silent p.A40A 0.24 TCGA-55-7994-01 15 40268812 40268812 C T EIF2AK4 Silent p.S672S 0.44 TCGA-55-7994-01 15 40498599 40498599 A T BUB1B Missense_Mutation p.E650V 0.51 tolerated(0.6) benign(0.004) TCGA-55-7994-01 15 40590836 40590836 C A PLCB2 Silent p.L308L 0.60 TCGA-55-7994-01 15 41810249 41810249 C A RPAP1 Silent p.V1309V 0.42 TCGA-55-7994-01 15 42139871 42139871 C T PLA2G4B Missense_Mutation p.A951V 0.42 tolerated(0.07) benign(0.001) TCGA-55-7994-01 15 43017368 43017368 T C CDAN1 Missense_Mutation p.S1178G 0.56 tolerated(0.08) benign(0.101) TCGA-55-7994-01 15 48063031 48063031 G T SEMA6D Missense_Mutation p.M757I 0.54 tolerated(0.15) benign(0.005) TCGA-55-7994-01 15 50288949 50288949 T C ATP8B4 Missense_Mutation p.N172D 0.46 deleterious(0) probably_damaging(0.998) TCGA-55-7994-01 15 51792375 51792375 C A DMXL2 Missense_Mutation p.V1016F 0.50 deleterious(0) probably_damaging(0.962) TCGA-55-7994-01 15 52571809 52571809 C A MYO5C Silent p.V67V 0.39 TCGA-55-7994-01 15 60907165 60907165 C A RORA Intron 0.38 TCGA-55-7994-01 15 62173140 62173140 G A VPS13C Missense_Mutation p.L3264F 0.44 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 15 65497680 65497680 C G CILP Silent p.S183S 0.46 TCGA-55-7994-01 15 72637881 72637881 C A HEXA Missense_Mutation p.G478W 0.57 deleterious(0) probably_damaging(0.995) TCGA-55-7994-01 15 74481483 74481483 C A STRA6 Missense_Mutation p.V394L 0.49 deleterious(0) possibly_damaging(0.793) TCGA-55-7994-01 15 75932168 75932168 C G IMP3 Silent p.V114V 0.29 TCGA-55-7994-01 15 77906831 77906831 C A LINGO1 Missense_Mutation p.R473L 0.77 deleterious(0) probably_damaging(0.996) TCGA-55-7994-01 15 78212154 78212154 C A RP11-114H24.7 Intron 0.49 TCGA-55-7994-01 15 78290594 78290594 C A TBC1D2B Nonsense_Mutation p.E934* 0.53 TCGA-55-7994-01 15 78894263 78894263 G T CHRNA3 Missense_Mutation p.P241T 0.41 tolerated(0.23) probably_damaging(1) TCGA-55-7994-01 15 81637296 81637296 T A TMC3 Silent p.A443A 0.25 TCGA-55-7994-01 15 82336368 82336368 G T MEX3B Missense_Mutation p.F281L 0.23 tolerated(0.57) benign(0.003) TCGA-55-7994-01 15 89760550 89760550 C T RLBP1 Silent p.K49K 0.50 TCGA-55-7994-01 15 90023551 90023551 A T RHCG Missense_Mutation p.L204Q 0.52 deleterious(0.03) probably_damaging(0.964) TCGA-55-7994-01 15 90172276 90172276 G A KIF7 Missense_Mutation p.R1199C 0.28 tolerated(0.09) possibly_damaging(0.762) TCGA-55-7994-01 15 90349646 90349646 T C ANPEP Missense_Mutation p.T57A 0.46 tolerated(0.27) benign(0.013) TCGA-55-7994-01 15 91452642 91452642 C T MAN2A2 Nonsense_Mutation p.R428* 0.53 TCGA-55-7994-01 16 1129194 1129194 C A SSTR5 Missense_Mutation p.P109H 0.55 deleterious(0.01) benign(0.038) TCGA-55-7994-01 16 12497352 12497352 G T SNX29 Missense_Mutation p.R668L 0.17 deleterious(0.03) possibly_damaging(0.858) TCGA-55-7994-01 16 14340988 14340988 C T MKL2 Missense_Mutation p.S624F 0.37 tolerated(0.52) possibly_damaging(0.694) TCGA-55-7994-01 16 14766428 14766428 T G PLA2G10 3'UTR 0.17 TCGA-55-7994-01 16 15026577 15026577 C G NPIPA1 5'Flank 0.06 TCGA-55-7994-01 16 15225356 15225356 C A RP11-1186N24.5 RNA 0.24 TCGA-55-7994-01 16 15831325 15831325 G T MYH11 Missense_Mutation p.L1099M 0.26 probably_damaging(0.971) TCGA-55-7994-01 16 17211686 17211686 C A XYLT1 Missense_Mutation p.A792S 0.20 deleterious(0) probably_damaging(0.964) TCGA-55-7994-01 16 18875011 18875011 C G SMG1 Missense_Mutation p.S1219T 0.13 tolerated(0.6) benign(0) TCGA-55-7994-01 16 2029347 2029347 G T NOXO1 Nonsense_Mutation p.Y279* 0.79 TCGA-55-7994-01 16 20422947 20422947 G A ACSM5 Silent p.Q47Q 0.21 TCGA-55-7994-01 16 21726376 21726376 G T OTOA Missense_Mutation p.S464I 0.34 deleterious(0.03) possibly_damaging(0.481) TCGA-55-7994-01 16 24268214 24268214 G T CACNG3 Missense_Mutation p.D47Y 0.16 deleterious(0.01) probably_damaging(0.953) TCGA-55-7994-01 16 25143810 25143810 G T LCMT1 Missense_Mutation p.G98V 0.36 deleterious(0) probably_damaging(1) TCGA-55-7994-01 16 28112947 28112947 G A XPO6 Silent p.H1036H 0.35 TCGA-55-7994-01 16 28515227 28515227 G T IL27 Missense_Mutation p.S59Y 0.47 deleterious(0) possibly_damaging(0.568) TCGA-55-7994-01 16 28601534 28601534 A T CCDC101 Missense_Mutation p.K136M 0.36 deleterious(0) possibly_damaging(0.485) TCGA-55-7994-01 16 28845713 28845713 A T ATXN2L Missense_Mutation p.Q741L 0.09 deleterious(0.01) probably_damaging(0.969) TCGA-55-7994-01 16 28847880 28847880 G T ATXN2L Intron 0.33 TCGA-55-7994-01 16 29889679 29889679 A G SEZ6L2 Silent p.Y547Y 0.19 TCGA-55-7994-01 16 29974333 29974335 GTG TT TMEM219 5'UTR 0.26 TCGA-55-7994-01 16 30081487 30081487 G T ALDOA Missense_Mutation p.G404V 0.12 deleterious(0) benign(0.33) TCGA-55-7994-01 16 30455694 30455694 C G SEPHS2 3'Flank 0.09 TCGA-55-7994-01 16 30721316 30721316 A G SRCAP Missense_Mutation p.E334G 0.28 unknown(0) TCGA-55-7994-01 16 31228216 31228216 C A PYDC1 Missense_Mutation p.G45V 0.18 tolerated(0.28) benign(0.216) TCGA-55-7994-01 16 31368665 31368665 G T ITGAX Missense_Mutation p.R137M 0.48 deleterious(0.04) benign(0.008) TCGA-55-7994-01 16 31384707 31384707 G A ITGAX Missense_Mutation p.G835D 0.36 tolerated(0.63) benign(0.125) TCGA-55-7994-01 16 31391153 31391153 G A ITGAX Missense_Mutation p.V982M 0.39 deleterious(0.02) possibly_damaging(0.621) TCGA-55-7994-01 16 31477280 31477280 G T ARMC5 Silent p.A658A 0.45 TCGA-55-7994-01 16 31927349 31927349 G T ZNF267 Silent p.V593V 0.24 TCGA-55-7994-01 16 3724358 3724358 G C TRAP1 Missense_Mutation p.I342M 0.19 deleterious(0) possibly_damaging(0.786) TCGA-55-7994-01 16 422611 422611 C A TMEM8A Missense_Mutation p.W673C 0.43 deleterious(0) probably_damaging(1) TCGA-55-7994-01 16 47117283 47117283 C A NETO2 Missense_Mutation p.S476I 0.29 tolerated(0.21) possibly_damaging(0.758) TCGA-55-7994-01 16 50745598 50745598 G T NOD2 Silent p.V592V 0.35 TCGA-55-7994-01 16 53679816 53679816 G A RPGRIP1L Silent p.L802L 0.28 TCGA-55-7994-01 16 54966694 54966694 G T IRX5 Silent p.T178T 0.33 TCGA-55-7994-01 16 55706020 55706020 G T SLC6A2 Missense_Mutation p.G193C 0.16 deleterious(0.04) possibly_damaging(0.676) TCGA-55-7994-01 16 56718005 56718005 A G MT1X 3'UTR 0.32 TCGA-55-7994-01 16 61687791 61687791 C A CDH8 Missense_Mutation p.M707I 0.44 tolerated(0.18) benign(0.023) TCGA-55-7994-01 16 64981713 64981713 T C CDH11 Silent p.A728A 0.41 TCGA-55-7994-01 16 65006841 65006841 G T CDH11 Silent p.A452A 0.35 TCGA-55-7994-01 16 66842948 66842948 C T NAE1 Missense_Mutation p.R394K 0.41 tolerated(0.08) benign(0.252) TCGA-55-7994-01 16 67188799 67188799 C A TRADD Missense_Mutation p.R231L 0.52 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 16 67318226 67318226 G T PLEKHG4 Nonsense_Mutation p.E520* 0.45 TCGA-55-7994-01 16 67335777 67335777 T C KCTD19 Missense_Mutation p.N231S 0.12 tolerated(0.06) benign(0.267) TCGA-55-7994-01 16 67719517 67719517 C A GFOD2 Missense_Mutation p.W34C 0.16 deleterious(0) probably_damaging(1) TCGA-55-7994-01 16 68264813 68264813 G T ESRP2 Missense_Mutation p.P610H 0.04 tolerated(0.07) possibly_damaging(0.83) TCGA-55-7994-01 16 70287221 70287221 T C AARS Missense_Mutation p.T891A 0.32 tolerated(0.32) benign(0.006) TCGA-55-7994-01 16 70935009 70935009 T C HYDIN Silent p.V2982V 0.15 TCGA-55-7994-01 16 7382962 7382962 A C RBFOX1 5'UTR 0.41 TCGA-55-7994-01 16 74425335 74425335 G T NPIPB15 Missense_Mutation p.C230F 0.28 tolerated_low_confidence(0.07) benign(0.007) TCGA-55-7994-01 16 75513169 75513169 C T CHST6 Silent p.P186P 0.26 TCGA-55-7994-01 16 77228706 77228706 C T MON1B Missense_Mutation p.A317V 0.03 deleterious(0.03) possibly_damaging(0.58) TCGA-55-7994-01 16 79632975 79632975 G T MAF Missense_Mutation p.N275K 0.13 deleterious(0) probably_damaging(0.994) TCGA-55-7994-01 16 81157276 81157276 G T PKD1L2 RNA 0.42 TCGA-55-7994-01 16 84034361 84034362 CC A NECAB2 Frame_Shift_Del p.T332Nfs*34 0.27 TCGA-55-7994-01 16 84203606 84203606 C A DNAAF1 Missense_Mutation p.P391Q 0.24 deleterious(0) probably_damaging(0.978) TCGA-55-7994-01 16 84228889 84228889 C A ADAD2 Missense_Mutation p.P323T 0.31 tolerated_low_confidence(0.44) benign(0.032) TCGA-55-7994-01 16 8868783 8868783 G T ABAT Nonsense_Mutation p.G331* 0.09 TCGA-55-7994-01 16 89348373 89348373 C A ANKRD11 Missense_Mutation p.G1526V 0.16 possibly_damaging(0.478) TCGA-55-7994-01 16 89357093 89357093 C G ANKRD11 Missense_Mutation p.A181P 0.15 probably_damaging(0.997) TCGA-55-7994-01 16 89662950 89662950 A T CPNE7 Missense_Mutation p.E608V 0.18 deleterious(0.03) probably_damaging(0.982) TCGA-55-7994-01 17 10323346 10323346 C T MYH8 Missense_Mutation p.E67K 0.50 tolerated(0.28) possibly_damaging(0.75) TCGA-55-7994-01 17 10404000 10404000 G A MYH1 Nonsense_Mutation p.Q1270* 0.17 TCGA-55-7994-01 17 10428934 10428934 C A MYH2 Splice_Site p.X1458_splice 0.43 TCGA-55-7994-01 17 16456263 16456263 C A ZNF287 Missense_Mutation p.C398F 0.47 deleterious(0) probably_damaging(0.998) TCGA-55-7994-01 17 17698231 17698231 G T RAI1 Missense_Mutation p.A657S 0.48 tolerated(0.24) benign(0.002) TCGA-55-7994-01 17 20319876 20319876 G C SRP68P3 RNA 0.27 TCGA-55-7994-01 17 21318801 21318801 G T KCNJ12 Missense_Mutation p.K49N 0.10 deleterious(0) probably_damaging(1) TCGA-55-7994-01 17 21825567 21825567 G A FAM27L RNA 0.44 TCGA-55-7994-01 17 26817412 26817412 G T SLC13A2 Missense_Mutation p.G107W 0.41 deleterious_low_confidence(0.03) benign(0.229) TCGA-55-7994-01 17 27448161 27448161 G A MYO18A Silent p.T480T 0.13 TCGA-55-7994-01 17 29556148 29556148 A T NF1 Missense_Mutation p.N839Y 0.20 deleterious(0) probably_damaging(0.991) TCGA-55-7994-01 17 3030137 3030137 C T OR1G1 Missense_Mutation p.A237T 0.39 deleterious(0.02) probably_damaging(0.996) TCGA-55-7994-01 17 3030714 3030714 G T OR1G1 Silent p.L44L 0.56 TCGA-55-7994-01 17 3101459 3101459 C A OR1A2 Missense_Mutation p.S216Y 0.49 deleterious(0) probably_damaging(1) TCGA-55-7994-01 17 3195518 3195518 G T OR3A1 Missense_Mutation p.A120D 0.51 deleterious(0) possibly_damaging(0.821) TCGA-55-7994-01 17 32612779 32612779 C A CCL11 5'UTR 0.47 TCGA-55-7994-01 17 33680024 33680024 C - SLFN11 Frame_Shift_Del p.S686Tfs*45 0.15 TCGA-55-7994-01 17 35300213 35300213 C A LHX1 Missense_Mutation p.P336T 0.18 deleterious(0.04) benign(0.273) TCGA-55-7994-01 17 35581990 35581990 G A ACACA Missense_Mutation p.R1133C 0.18 deleterious(0) possibly_damaging(0.901) TCGA-55-7994-01 17 36485794 36485794 C A GPR179 Missense_Mutation p.V1220F 0.22 tolerated(0.72) benign(0.014) TCGA-55-7994-01 17 36704837 36704837 T C SRCIN1 Missense_Mutation p.I1076V 0.47 tolerated(0.23) benign(0.069) TCGA-55-7994-01 17 37898907 37898907 C T GRB7 Missense_Mutation p.P105S 0.10 tolerated(0.17) probably_damaging(0.999) TCGA-55-7994-01 17 38033057 38033057 G T ZPBP2 Missense_Mutation p.D338Y 0.42 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-55-7994-01 17 3851060 3851060 C G ATP2A3 Silent p.A240A 0.40 TCGA-55-7994-01 17 38911183 38911183 C T KRT25 Nonsense_Mutation p.W114* 0.49 TCGA-55-7994-01 17 38953282 38953282 C A KRT28 Silent p.L288L 0.19 TCGA-55-7994-01 17 38990716 38990716 C G TMEM99 5'UTR 0.35 TCGA-55-7994-01 17 39551720 39551720 G T KRT31 Silent p.T248T 0.21 TCGA-55-7994-01 17 39577083 39577083 T A KRT37 3'UTR 0.25 TCGA-55-7994-01 17 39635108 39635108 G A KRT35 Missense_Mutation p.A284V 0.09 tolerated(1) probably_damaging(0.999) TCGA-55-7994-01 17 40344701 40344701 T A GHDC Silent p.G149G 0.36 TCGA-55-7994-01 17 40370233 40370233 C A STAT5B Missense_Mutation p.V369L 0.21 tolerated(0.07) benign(0) TCGA-55-7994-01 17 40722075 40722075 G T MLX Missense_Mutation p.K238N 0.27 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 17 41246510 41246510 G T BRCA1 Silent p.P346P 0.16 TCGA-55-7994-01 17 41367886 41367886 G C TMEM106A Missense_Mutation p.V119L 0.26 tolerated(0.05) benign(0.008) TCGA-55-7994-01 17 41570159 41570159 G T DHX8 Missense_Mutation p.R205L 0.25 tolerated(0.08) unknown(0) TCGA-55-7994-01 17 41599497 41599497 G T DHX8 Missense_Mutation p.A1116S 0.47 tolerated(0.08) probably_damaging(0.917) TCGA-55-7994-01 17 42275500 42275500 T A ATXN7L3 5'Flank 0.45 TCGA-55-7994-01 17 42847411 42847411 A - ADAM11 Frame_Shift_Del p.S126Afs*39 0.28 TCGA-55-7994-01 17 43320594 43320594 C T FMNL1 Missense_Mutation p.A707V 0.31 tolerated(1) benign(0.131) TCGA-55-7994-01 17 45822286 45822286 G T TBX21 Missense_Mutation p.G388W 0.48 tolerated(0.18) probably_damaging(0.939) TCGA-55-7994-01 17 46654125 46654125 C T HOXB4 Missense_Mutation p.G239R 0.28 tolerated(0.18) unknown(0) TCGA-55-7994-01 17 46675194 46675194 C A HOXB6 Missense_Mutation p.D107Y 0.28 deleterious(0.01) possibly_damaging(0.605) TCGA-55-7994-01 17 4841325 4841325 T G SLC25A11 Missense_Mutation p.N261T 0.08 deleterious(0) benign(0.314) TCGA-55-7994-01 17 48598508 48598508 C T MYCBPAP Silent p.T361T 0.31 TCGA-55-7994-01 17 48628429 48628429 G C SPATA20 Missense_Mutation p.R485P 0.12 deleterious(0.03) possibly_damaging(0.814) TCGA-55-7994-01 17 5050428 5050428 G C USP6 Missense_Mutation p.L790F 0.55 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-55-7994-01 17 56386005 56386005 T C BZRAP1 Missense_Mutation p.N1543S 0.19 tolerated(0.34) benign(0.014) TCGA-55-7994-01 17 56408597 56408597 G T BZRAP1 5'Flank 0.07 TCGA-55-7994-01 17 59479196 59479196 C A TBX2 Missense_Mutation p.P183T 0.34 deleterious(0) probably_damaging(0.996) TCGA-55-7994-01 17 61561794 61561794 C T ACE Missense_Mutation p.P605S 0.19 deleterious(0.03) benign(0) TCGA-55-7994-01 17 61987661 61987661 A T CSHL1 Missense_Mutation p.L111Q 0.40 deleterious(0.01) probably_damaging(0.993) TCGA-55-7994-01 17 61994662 61994662 C T GH1 3'UTR 0.47 TCGA-55-7994-01 17 62018745 62018745 G T SCN4A Missense_Mutation p.Q1633K 0.44 deleterious(0) possibly_damaging(0.701) TCGA-55-7994-01 17 62034746 62034746 C A SCN4A Missense_Mutation p.G718C 0.50 deleterious(0) probably_damaging(1) TCGA-55-7994-01 17 62892951 62892951 C A LRRC37A3 Missense_Mutation p.R142M 0.25 deleterious(0) benign(0.229) TCGA-55-7994-01 17 63622 63622 C A RPH3AL 3'UTR 0.65 TCGA-55-7994-01 17 65920669 65920669 G C BPTF Missense_Mutation p.E1905D 0.35 probably_damaging(0.997) TCGA-55-7994-01 17 67023539 67023539 C A ABCA9 Missense_Mutation p.A615S 0.32 deleterious(0) possibly_damaging(0.86) TCGA-55-7994-01 17 67522851 67522851 G A MAP2K6 Splice_Site p.X294_splice 0.10 TCGA-55-7994-01 17 68171723 68171723 C A KCNJ2 Silent p.A181A 0.23 TCGA-55-7994-01 17 71281797 71281797 C A CDC42EP4 Silent p.L281L 0.17 TCGA-55-7994-01 17 7189847 7189847 G C SLC2A4 Missense_Mutation p.D477H 0.48 deleterious(0) probably_damaging(0.995) TCGA-55-7994-01 17 72240186 72240186 G T TTYH2 Missense_Mutation p.V268L 0.16 deleterious(0) possibly_damaging(0.706) TCGA-55-7994-01 17 72346569 72346569 G T KIF19 Nonsense_Mutation p.E415* 0.27 TCGA-55-7994-01 17 72462878 72462878 C A CD300A Silent p.V12V 0.29 TCGA-55-7994-01 17 72522107 72522107 G T CD300LB Nonsense_Mutation p.C87* 0.18 TCGA-55-7994-01 17 72832373 72832373 C A TMEM104 Missense_Mutation p.D346E 0.39 tolerated(0.1) benign(0.209) TCGA-55-7994-01 17 72888695 72888695 G A FADS6 Silent p.T104T 0.22 TCGA-55-7994-01 17 72923878 72923878 C T OTOP2 Missense_Mutation p.R210C 0.05 tolerated(0.07) benign(0.443) TCGA-55-7994-01 17 7312025 7312025 G T NLGN2 Nonsense_Mutation p.E151* 0.55 TCGA-55-7994-01 17 7329951 7329951 C T C17orf74 Missense_Mutation p.S214F 0.47 deleterious(0) probably_damaging(0.919) TCGA-55-7994-01 17 74003853 74003853 G A EVPL Silent p.F1811F 0.16 TCGA-55-7994-01 17 74288466 74288466 A T QRICH2 Nonsense_Mutation p.L615* 0.45 TCGA-55-7994-01 17 74464942 74464942 C - AANAT Frame_Shift_Del p.C84Afs*36 0.33 TCGA-55-7994-01 17 74679993 74679993 C A MXRA7 Intron 0.48 TCGA-55-7994-01 17 7577120 7577120 C A TP53 Missense_Mutation p.R273L 0.24 deleterious(0) probably_damaging(0.993) TCGA-55-7994-01 17 79094916 79094916 G A AATK Silent p.D940D 0.26 TCGA-55-7994-01 17 80043140 80043140 T A FASN Missense_Mutation p.S1421C 0.26 deleterious(0.02) possibly_damaging(0.682) TCGA-55-7994-01 17 8025230 8025230 C - HES7 Frame_Shift_Del p.A118Pfs*24 0.36 TCGA-55-7994-01 17 80333311 80333311 G T UTS2R Missense_Mutation p.V371L 0.22 tolerated(0.47) benign(0.002) TCGA-55-7994-01 17 8159725 8159725 G T PFAS Missense_Mutation p.S274I 0.56 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 17 8793405 8793405 C A PIK3R5 Missense_Mutation p.E232D 0.63 tolerated(0.32) benign(0.005) TCGA-55-7994-01 17 8808217 8808217 G T PIK3R5 Missense_Mutation p.P97T 0.56 deleterious(0.01) possibly_damaging(0.544) TCGA-55-7994-01 17 915173 915173 C T ABR Missense_Mutation p.E672K 0.53 deleterious(0) benign(0.189) TCGA-55-7994-01 17 9923301 9923301 C A GAS7 Intron 0.38 TCGA-55-7994-01 18 12479749 12479749 C A SPIRE1 Missense_Mutation p.K451N 0.43 deleterious(0.01) probably_damaging(0.994) TCGA-55-7994-01 18 18567066 18567066 C A ROCK1 Nonsense_Mutation p.E717* 0.38 TCGA-55-7994-01 18 20562350 20562350 G T RBBP8 Missense_Mutation p.A200S 0.47 tolerated(0.33) benign(0.071) TCGA-55-7994-01 18 21113482 21113482 C T NPC1 Splice_Site p.X1198_splice 0.25 TCGA-55-7994-01 18 21891947 21891947 C A OSBPL1A Splice_Site p.X364_splice 0.44 TCGA-55-7994-01 18 2539038 2539038 C T METTL4 Silent p.Q460Q 0.29 TCGA-55-7994-01 18 2796455 2796455 G T SMCHD1 Missense_Mutation p.V1977F 0.26 tolerated(0.18) benign(0.043) TCGA-55-7994-01 18 28710578 28710578 C A DSC1 Missense_Mutation p.V862L 0.50 tolerated(0.08) probably_damaging(0.988) TCGA-55-7994-01 18 28986153 28986153 T G DSG4 Missense_Mutation p.L584V 0.05 tolerated(0.16) benign(0.161) TCGA-55-7994-01 18 29049064 29049064 T A DSG3 Missense_Mutation p.L550H 0.60 tolerated(0.27) possibly_damaging(0.546) TCGA-55-7994-01 18 3456263 3456263 G T TGIF1 Intron 0.34 TCGA-55-7994-01 18 3879965 3879965 C T DLGAP1 Missense_Mutation p.S35N 0.30 tolerated(0.18) benign(0.002) TCGA-55-7994-01 18 44560763 44560763 G T TCEB3B Silent p.G291G 0.62 TCGA-55-7994-01 18 55020133 55020133 G A ST8SIA3 Missense_Mutation p.S19N 0.51 possibly_damaging(0.483) TCGA-55-7994-01 18 60243765 60243765 G C ZCCHC2 Missense_Mutation p.A1164P 0.45 deleterious(0) probably_damaging(0.998) TCGA-55-7994-01 18 61383336 61383336 C A SERPINB11 Missense_Mutation p.T142K 0.62 tolerated(0.18) possibly_damaging(0.678) TCGA-55-7994-01 18 61584737 61584737 T C SERPINB10 Silent p.S72S 0.20 TCGA-55-7994-01 18 67365808 67365808 G T DOK6 Missense_Mutation p.W193L 0.50 tolerated(0.18) benign(0.121) TCGA-55-7994-01 18 67365809 67365809 G T DOK6 Missense_Mutation p.W193C 0.50 tolerated(0.07) probably_damaging(0.941) TCGA-55-7994-01 18 67781765 67781765 C G RTTN Missense_Mutation p.R1200P 0.48 deleterious(0.03) possibly_damaging(0.499) TCGA-55-7994-01 18 67802464 67802464 T C RTTN Silent p.L947L 0.55 TCGA-55-7994-01 18 67864942 67864942 C A RTTN Missense_Mutation p.W204L 0.30 tolerated(0.11) probably_damaging(0.936) TCGA-55-7994-01 18 7231352 7231352 G C LRRC30 Missense_Mutation p.E72D 0.14 tolerated(0.21) possibly_damaging(0.887) TCGA-55-7994-01 18 74074514 74074514 T A ZNF516 Splice_Site p.X1145_splice 0.43 TCGA-55-7994-01 18 76753541 76753541 C A SALL3 Missense_Mutation p.P517H 0.58 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 18 8796376 8796376 C T SOGA2 Silent p.F719F 0.28 TCGA-55-7994-01 18 9887266 9887266 C A TXNDC2 Missense_Mutation p.P264T 0.30 tolerated(0.12) possibly_damaging(0.718) TCGA-55-7994-01 19 10079131 10079131 C T COL5A3 Missense_Mutation p.G1415E 0.21 unknown(0) TCGA-55-7994-01 19 10246409 10246409 G A DNMT1 Intron 0.27 TCGA-55-7994-01 19 1080511 1080511 A G HMHA1 Missense_Mutation p.D642G 0.16 tolerated(0.12) possibly_damaging(0.535) TCGA-55-7994-01 19 1080515 1080515 G T HMHA1 Silent p.S643S 0.16 TCGA-55-7994-01 19 11215977 11215977 G T LDLR Missense_Mutation p.R132L 0.26 tolerated(0.16) benign(0.005) TCGA-55-7994-01 19 11565634 11565634 C T ELAVL3 Missense_Mutation p.A271T 0.34 tolerated(0.12) benign(0.011) TCGA-55-7994-01 19 12491604 12491604 C A CTD-3105H18.14 3'UTR 0.16 TCGA-55-7994-01 19 12541846 12541846 C T ZNF443 Silent p.L380L 0.23 TCGA-55-7994-01 19 12542043 12542043 C A ZNF443 Missense_Mutation p.G315W 0.30 deleterious(0) probably_damaging(1) TCGA-55-7994-01 19 12940753 12940753 C T RTBDN Nonsense_Mutation p.W46* 0.25 TCGA-55-7994-01 19 12976614 12976614 C T MAST1 Silent p.L630L 0.15 TCGA-55-7994-01 19 13365938 13365938 C A CACNA1A Missense_Mutation p.A1576S 0.18 benign(0.003) TCGA-55-7994-01 19 14070233 14070233 C G DCAF15 Silent p.V387V 0.32 TCGA-55-7994-01 19 1465263 1465263 C A APC2 Missense_Mutation p.R655S 0.18 probably_damaging(0.999) TCGA-55-7994-01 19 15197875 15197875 A G OR1I1 5'UTR 0.12 TCGA-55-7994-01 19 15299047 15299047 C G NOTCH3 Silent p.S497S 0.33 TCGA-55-7994-01 19 15367952 15367952 C A BRD4 Silent p.P458P 0.21 TCGA-55-7994-01 19 1555426 1555426 C A MEX3D 3'UTR 0.27 TCGA-55-7994-01 19 15564222 15564222 C G RASAL3 Missense_Mutation p.R789P 0.36 tolerated(0.11) probably_damaging(0.956) TCGA-55-7994-01 19 15586644 15586644 C A PGLYRP2 Silent p.G279G 0.27 TCGA-55-7994-01 19 15586645 15586645 C A PGLYRP2 Missense_Mutation p.G279V 0.28 deleterious(0) probably_damaging(1) TCGA-55-7994-01 19 15990474 15990474 A - CYP4F2 Frame_Shift_Del p.I419Sfs*60 0.30 TCGA-55-7994-01 19 16045232 16045232 C A CYP4F11 5'UTR 0.29 TCGA-55-7994-01 19 16314346 16314346 A T AP1M1 Missense_Mutation p.K40M 0.18 tolerated(0.24) benign(0.061) TCGA-55-7994-01 19 16980570 16980570 G T SIN3B Silent p.A734A 0.27 TCGA-55-7994-01 19 17309028 17309028 G A MYO9B Silent p.A1383A 0.17 TCGA-55-7994-01 19 17370739 17370739 G T USHBP1 Missense_Mutation p.S245R 0.32 deleterious(0.04) probably_damaging(0.989) TCGA-55-7994-01 19 17955180 17955180 C G JAK3 Missense_Mutation p.C16S 0.18 tolerated(0.6) benign(0.035) TCGA-55-7994-01 19 18084898 18084898 C A KCNN1 Missense_Mutation p.D67E 0.10 tolerated(1) benign(0) TCGA-55-7994-01 19 18375740 18375740 C A KIAA1683 Missense_Mutation p.E870D 0.24 tolerated(0.1) benign(0.298) TCGA-55-7994-01 19 18779844 18779844 G A KLHL26 Missense_Mutation p.R546Q 0.17 tolerated(0.36) benign(0.165) TCGA-55-7994-01 19 19452187 19452187 C T MAU2 Nonsense_Mutation p.Q236* 0.29 TCGA-55-7994-01 19 19654684 19654684 G T CILP2 Nonsense_Mutation p.E444* 0.53 TCGA-55-7994-01 19 20808347 20808347 C A ZNF626 Missense_Mutation p.Q112H 0.14 tolerated(0.17) possibly_damaging(0.818) TCGA-55-7994-01 19 22155556 22155556 C - ZNF208 Frame_Shift_Del p.W760Cfs*14 0.17 TCGA-55-7994-01 19 22271502 22271502 A G ZNF257 Missense_Mutation p.K317R 0.31 deleterious(0.03) benign(0.42) TCGA-55-7994-01 19 22585651 22585651 G C ZNF98 Missense_Mutation p.L65V 0.22 deleterious(0) possibly_damaging(0.899) TCGA-55-7994-01 19 22836757 22836757 C G ZNF492 Missense_Mutation p.L24V 0.06 deleterious(0) possibly_damaging(0.636) TCGA-55-7994-01 19 22939406 22939406 C - ZNF99 3'Flank 0.12 TCGA-55-7994-01 19 22940928 22940928 A G ZNF99 Missense_Mutation p.C595R 0.19 deleterious(0) probably_damaging(1) TCGA-55-7994-01 19 2324190 2324190 C A LSM7 Nonsense_Mutation p.G35* 0.38 TCGA-55-7994-01 19 2324192 2324192 C A LSM7 Missense_Mutation p.S34I 0.38 tolerated(0.2) benign(0.021) TCGA-55-7994-01 19 23329244 23329244 C T ZNF730 Silent p.T466T 0.28 TCGA-55-7994-01 19 2877519 2877519 C A ZNF556 Missense_Mutation p.S188Y 0.28 deleterious(0.01) benign(0.248) TCGA-55-7994-01 19 2987939 2987939 C A TLE6 Silent p.S223S 0.21 TCGA-55-7994-01 19 30935540 30935540 G A ZNF536 Silent p.A357A 0.20 TCGA-55-7994-01 19 30936020 30936020 C T ZNF536 Silent p.P517P 0.30 TCGA-55-7994-01 19 31769532 31769532 C A TSHZ3 Missense_Mutation p.M389I 0.26 deleterious(0.02) benign(0.268) TCGA-55-7994-01 19 35849879 35849879 C A FFAR3 Silent p.L29L 0.27 TCGA-55-7994-01 19 37118089 37118089 C A ZNF382 Missense_Mutation p.H430Q 0.26 deleterious(0) probably_damaging(0.998) TCGA-55-7994-01 19 37853636 37853636 G A HKR1 Silent p.K313K 0.19 TCGA-55-7994-01 19 38028095 38028095 G T ZNF793 Missense_Mutation p.G179C 0.33 tolerated(0.18) benign(0.283) TCGA-55-7994-01 19 3816706 3816706 C A ZFR2 Missense_Mutation p.R690L 0.27 tolerated(0.06) possibly_damaging(0.635) TCGA-55-7994-01 19 38189613 38189613 T A ZNF607 Silent p.G473G 0.21 TCGA-55-7994-01 19 39023367 39023367 C G RYR1 Silent p.V3750V 0.30 TCGA-55-7994-01 19 39590977 39590977 C G PAPL Missense_Mutation p.H206D 0.23 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 19 39667262 39667262 G T PAK4 Missense_Mutation p.Q464H 0.25 deleterious(0) probably_damaging(0.984) TCGA-55-7994-01 19 3984192 3984192 T A EEF2 Missense_Mutation p.T54S 0.20 tolerated(0.11) possibly_damaging(0.519) TCGA-55-7994-01 19 40541988 40541988 G A ZNF780B Missense_Mutation p.R260C 0.25 tolerated(0.12) benign(0.147) TCGA-55-7994-01 19 4055177 4055177 G A ZBTB7A Silent p.S18S 0.35 TCGA-55-7994-01 19 40901739 40901739 C T PRX Silent p.E840E 0.25 TCGA-55-7994-01 19 41000860 41000860 T G SPTBN4 Missense_Mutation p.F215C 0.17 deleterious(0) possibly_damaging(0.765) TCGA-55-7994-01 19 41062025 41062025 G C SPTBN4 Missense_Mutation p.R1707P 0.14 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 19 41351903 41351903 G T CYP2A6 Missense_Mutation p.R311S 0.27 probably_damaging(0.998) TCGA-55-7994-01 19 41597773 41597773 C A CYP2A13 Missense_Mutation p.P264Q 0.15 deleterious(0) probably_damaging(1) TCGA-55-7994-01 19 42824510 42824510 G T TMEM145 Missense_Mutation p.G372V 0.29 tolerated(0.56) benign(0.023) TCGA-55-7994-01 19 43689075 43689075 C G PSG5 Missense_Mutation p.G97R 0.44 deleterious(0.03) benign(0.171) TCGA-55-7994-01 19 43763169 43763169 G T PSG9 Missense_Mutation p.N276K 0.24 deleterious(0.01) benign(0.077) TCGA-55-7994-01 19 44005998 44005998 C T PHLDB3 Missense_Mutation p.R141Q 0.31 tolerated(0.12) benign(0.046) TCGA-55-7994-01 19 44223974 44223974 G A IRGC Missense_Mutation p.G422S 0.26 tolerated_low_confidence(0.44) benign(0.001) TCGA-55-7994-01 19 44536945 44536945 A T ZNF222 Missense_Mutation p.N413I 0.28 deleterious(0.02) benign(0.098) TCGA-55-7994-01 19 44681628 44681628 G T ZNF226 Missense_Mutation p.R738L 0.25 tolerated(0.29) possibly_damaging(0.907) TCGA-55-7994-01 19 44791636 44791636 C G ZNF235 Missense_Mutation p.G651A 0.18 deleterious(0.02) probably_damaging(1) TCGA-55-7994-01 19 4513513 4513513 G T PLIN4 Silent p.A139A 0.20 TCGA-55-7994-01 19 45721554 45721554 G T EXOC3L2 Silent p.R188R 0.23 TCGA-55-7994-01 19 47844327 47844327 G T C5AR2 Missense_Mutation p.A91S 0.26 tolerated(0.1) probably_damaging(0.996) TCGA-55-7994-01 19 48876806 48876806 G A SYNGR4 Silent p.L42L 0.19 TCGA-55-7994-01 19 48908226 48908226 C A GRIN2D Missense_Mutation p.A234D 0.38 tolerated(0.21) possibly_damaging(0.76) TCGA-55-7994-01 19 49245052 49245052 C T IZUMO1 Missense_Mutation p.V250I 0.43 deleterious(0.01) probably_damaging(1) TCGA-55-7994-01 19 49245054 49245054 T A IZUMO1 Missense_Mutation p.H249L 0.43 tolerated(0.06) benign(0.002) TCGA-55-7994-01 19 49362833 49362833 C T PLEKHA4 Silent p.P195P 0.21 TCGA-55-7994-01 19 49967495 49967495 G T ALDH16A1 Missense_Mutation p.G436W 0.32 deleterious(0) probably_damaging(0.979) TCGA-55-7994-01 19 50918805 50918805 C T POLD1 Missense_Mutation p.S892F 0.31 deleterious(0.01) benign(0.279) TCGA-55-7994-01 19 50918807 50918807 G C POLD1 Missense_Mutation p.D893H 0.32 deleterious(0) probably_damaging(0.947) TCGA-55-7994-01 19 51325138 51325138 G A KLK1 Intron 0.19 TCGA-55-7994-01 19 51453249 51453249 C A KLK5 Missense_Mutation p.R66L 0.26 tolerated(0.07) benign(0.4) TCGA-55-7994-01 19 51506360 51506360 C G KLK9 3'UTR 0.26 TCGA-55-7994-01 19 51512807 51512807 C A KLK9 5'UTR 0.17 TCGA-55-7994-01 19 51649147 51649147 G T SIGLEC7 Missense_Mutation p.V266F 0.28 deleterious(0) probably_damaging(0.914) TCGA-55-7994-01 19 51738409 51738409 C A CD33 Intron 0.28 TCGA-55-7994-01 19 51914560 51914560 G T SIGLEC10 Silent p.P629P 0.19 TCGA-55-7994-01 19 51916969 51916969 G T SIGLEC10 Silent p.P606P 0.19 TCGA-55-7994-01 19 52496450 52496450 T G ZNF615 Missense_Mutation p.N638H 0.16 deleterious(0.02) possibly_damaging(0.902) TCGA-55-7994-01 19 53014918 53014918 G T ZNF578 Missense_Mutation p.K428N 0.25 deleterious(0) probably_damaging(0.993) TCGA-55-7994-01 19 53056601 53056601 C T ZNF808 Silent p.H144H 0.24 TCGA-55-7994-01 19 53612593 53612593 C G ZNF415 Missense_Mutation p.Q235H 0.12 tolerated(0.07) benign(0.244) TCGA-55-7994-01 19 53645462 53645462 A T ZNF347 Missense_Mutation p.C208S 0.21 tolerated(0.18) benign(0.389) TCGA-55-7994-01 19 53793091 53793091 C A BIRC8 Silent p.P179P 0.20 TCGA-55-7994-01 19 53855530 53855530 G C ZNF845 Silent p.R534R 0.26 TCGA-55-7994-01 19 53886901 53886901 G T ZNF525 3'UTR 0.27 TCGA-55-7994-01 19 53889579 53889579 G T ZNF525 3'Flank 0.33 TCGA-55-7994-01 19 54403552 54403552 G C PRKCG Silent p.L449L 0.22 TCGA-55-7994-01 19 54600389 54600389 G T OSCAR Missense_Mutation p.P49T 0.36 deleterious(0.03) possibly_damaging(0.86) TCGA-55-7994-01 19 54744265 54744265 G T LILRA6 Missense_Mutation p.F381L 0.17 deleterious(0) probably_damaging(0.982) TCGA-55-7994-01 19 54759201 54759201 G T LILRB5 Missense_Mutation p.N300K 0.11 tolerated(0.09) possibly_damaging(0.551) TCGA-55-7994-01 19 54783643 54783643 C G LILRB2 Intron 0.20 TCGA-55-7994-01 19 55143424 55143424 C G LILRB1 Missense_Mutation p.P133A 0.15 deleterious(0) benign(0.222) TCGA-55-7994-01 19 55325360 55325360 C A KIR2DL4 Missense_Mutation p.Q275K 0.21 tolerated(0.11) benign(0.382) TCGA-55-7994-01 19 55493963 55493963 G T NLRP2 Silent p.A299A 0.23 TCGA-55-7994-01 19 55713547 55713547 G T PTPRH Silent p.R344R 0.16 TCGA-55-7994-01 19 56041235 56041235 C A SBK2 Silent p.L304L 0.31 TCGA-55-7994-01 19 56206234 56206234 G T EPN1 Missense_Mutation p.K555N 0.19 deleterious(0) probably_damaging(0.997) TCGA-55-7994-01 19 56369254 56369254 G C NLRP4 Silent p.L165L 0.20 TCGA-55-7994-01 19 56539561 56539561 C A NLRP5 Silent p.G654G 0.18 TCGA-55-7994-01 19 56545007 56545007 G T NLRP5 Silent p.L849L 0.24 TCGA-55-7994-01 19 56704272 56704272 G A ZSCAN5B Silent p.F50F 0.24 TCGA-55-7994-01 19 57176502 57176502 C A ZNF835 Missense_Mutation p.G22V 0.28 deleterious(0.04) probably_damaging(0.988) TCGA-55-7994-01 19 57286141 57286141 C G ZIM2 Missense_Mutation p.G500A 0.19 deleterious(0) probably_damaging(0.997) TCGA-55-7994-01 19 5729887 5729887 C A CATSPERD Missense_Mutation p.Q70K 0.19 tolerated(0.44) benign(0.338) TCGA-55-7994-01 19 57328231 57328231 G T PEG3 Missense_Mutation p.H527N 0.20 deleterious(0.01) probably_damaging(0.988) TCGA-55-7994-01 19 57328918 57328919 - T PEG3 Frame_Shift_Ins p.S298Ifs*9 0.22 TCGA-55-7994-01 19 57867855 57867855 C T ZNF304 Silent p.H206H 0.29 TCGA-55-7994-01 19 58003815 58003815 T A ZNF419 Intron 0.18 TCGA-55-7994-01 19 58018610 58018610 G C ZNF773 Missense_Mutation p.G383R 0.25 deleterious(0) probably_damaging(1) TCGA-55-7994-01 19 58190285 58190285 G C ZSCAN4 3'UTR 0.35 TCGA-55-7994-01 19 58565157 58565157 G C ZSCAN1 Missense_Mutation p.C322S 0.16 deleterious(0) probably_damaging(0.996) TCGA-55-7994-01 19 5894810 5894810 G A NDUFA11 Intron 0.34 TCGA-55-7994-01 19 6156446 6156446 C A ACSBG2 Missense_Mutation p.L131I 0.18 tolerated(0.74) possibly_damaging(0.511) TCGA-55-7994-01 19 7506854 7506854 G A ARHGEF18 Missense_Mutation p.A238T 0.20 deleterious(0) possibly_damaging(0.682) TCGA-55-7994-01 19 7807858 7807858 C A CD209 3'UTR 0.22 TCGA-55-7994-01 19 8137013 8137013 C G FBN3 Silent p.S2669S 0.14 TCGA-55-7994-01 19 8191639 8191639 C A FBN3 Missense_Mutation p.G792C 0.33 deleterious(0.01) possibly_damaging(0.676) TCGA-55-7994-01 19 852901 852901 G - ELANE Frame_Shift_Del p.G33Afs*27 0.17 TCGA-55-7994-01 19 9002550 9002550 G T MUC16 Silent p.I13422I 0.16 TCGA-55-7994-01 19 9012843 9012843 C A MUC16 Missense_Mutation p.Q12867H 0.24 benign(0.273) TCGA-55-7994-01 19 9049156 9049156 G T MUC16 Silent p.V10825V 0.25 TCGA-55-7994-01 19 9057435 9057435 G T MUC16 Missense_Mutation p.P10004H 0.22 unknown(0) TCGA-55-7994-01 19 9059113 9059113 G A MUC16 Missense_Mutation p.P9445S 0.17 unknown(0) TCGA-55-7994-01 19 9077008 9077008 C T MUC16 Missense_Mutation p.G3480R 0.21 unknown(0) TCGA-55-7994-01 19 9077375 9077375 G T MUC16 Missense_Mutation p.D3357E 0.25 unknown(0) TCGA-55-7994-01 19 9086338 9086338 T A MUC16 Missense_Mutation p.E1826V 0.24 unknown(0) TCGA-55-7994-01 19 9087343 9087343 G T MUC16 Missense_Mutation p.P1491H 0.24 unknown(0) TCGA-55-7994-01 19 9325115 9325115 C A OR7D4 Silent p.T133T 0.28 TCGA-55-7994-01 19 9361777 9361777 G A OR7E24 Missense_Mutation p.E20K 0.35 tolerated(0.11) benign(0.007) TCGA-55-7994-01 19 9525062 9525062 C A ZNF266 Missense_Mutation p.G180V 0.25 deleterious(0.04) probably_damaging(0.995) TCGA-55-7994-01 19 9801928 9801928 A T ZNF812 Missense_Mutation p.V84E 0.22 tolerated(0.26) benign(0.24) TCGA-55-7994-01 1 10155609 10155609 C G UBE4B Nonsense_Mutation p.S101* 0.38 TCGA-55-7994-01 1 102270155 102270155 A G OLFM3 Missense_Mutation p.V339A 0.13 deleterious(0) possibly_damaging(0.474) TCGA-55-7994-01 1 103461558 103461558 G T COL11A1 Missense_Mutation p.P761H 0.20 unknown(0) TCGA-55-7994-01 1 103573699 103573699 C A COL11A1 Silent p.R12R 0.20 TCGA-55-7994-01 1 10364665 10364665 C T KIF1B Intron 0.20 TCGA-55-7994-01 1 107867410 107867410 G A NTNG1 Silent p.K251K 0.20 TCGA-55-7994-01 1 109656875 109656875 C T KIAA1324 Missense_Mutation p.R24W 0.33 deleterious_low_confidence(0.03) benign(0.003) TCGA-55-7994-01 1 109742856 109742856 A G KIAA1324 Missense_Mutation p.Q935R 0.40 tolerated(0.36) benign(0.007) TCGA-55-7994-01 1 11008247 11008247 T A C1orf127 Missense_Mutation p.S649C 0.21 deleterious(0.01) possibly_damaging(0.85) TCGA-55-7994-01 1 110709553 110709553 T C SLC6A17 Translation_Start_Site p.M1? 0.33 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-55-7994-01 1 111740561 111740561 C T DENND2D Missense_Mutation p.G136E 0.39 deleterious(0) probably_damaging(0.973) TCGA-55-7994-01 1 11181350 11181350 C A MTOR Missense_Mutation p.G2296W 0.17 deleterious(0) probably_damaging(1) TCGA-55-7994-01 1 111985355 111985355 C G WDR77 Silent p.V240V 0.21 TCGA-55-7994-01 1 114354919 114354919 C G RSBN1 Missense_Mutation p.G39A 0.28 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-55-7994-01 1 114641766 114641766 C A SYT6 Silent p.P353P 0.34 TCGA-55-7994-01 1 115428197 115428197 C A SYCP1 Missense_Mutation p.H318N 0.14 tolerated(0.2) benign(0.001) TCGA-55-7994-01 1 11591057 11591057 G T PTCHD2 Missense_Mutation p.V1066L 0.19 tolerated(0.05) possibly_damaging(0.519) TCGA-55-7994-01 1 117122168 117122168 C G IGSF3 Silent p.P1080P 0.23 TCGA-55-7994-01 1 118439583 118439583 C A GDAP2 Missense_Mutation p.L275F 0.31 tolerated(0.63) possibly_damaging(0.892) TCGA-55-7994-01 1 119441677 119441677 T C TBX15 Missense_Mutation p.D227G 0.18 tolerated(0.05) benign(0.34) TCGA-55-7994-01 1 12387804 12387804 C T VPS13D Missense_Mutation p.A2697V 0.45 benign(0.021) TCGA-55-7994-01 1 13910471 13910471 C A PDPN Missense_Mutation p.F57L 0.20 tolerated(0.1) possibly_damaging(0.682) TCGA-55-7994-01 1 1425771 1425771 A T ATAD3B Missense_Mutation p.N491I 0.19 deleterious(0) benign(0.009) TCGA-55-7994-01 1 145304455 145304455 A G NBPF10 Missense_Mutation p.Q463R 0.14 possibly_damaging(0.478) TCGA-55-7994-01 1 148015769 148015769 C A NBPF14 Missense_Mutation p.G294W 0.73 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 1 148932853 148932853 G T RP11-14N7.2 RNA 0.12 TCGA-55-7994-01 1 149895599 149895599 C A SF3B4 Silent p.P370P 0.39 TCGA-55-7994-01 1 149916181 149916181 C A OTUD7B Missense_Mutation p.G703W 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.72) TCGA-55-7994-01 1 152058608 152058608 G A TCHHL1 Missense_Mutation p.T517I 0.44 tolerated(0.06) possibly_damaging(0.626) TCGA-55-7994-01 1 152080392 152080392 C A TCHH Missense_Mutation p.Q1767H 0.18 unknown(0) TCGA-55-7994-01 1 152193129 152193129 C A HRNR Missense_Mutation p.G326W 0.13 unknown(0) TCGA-55-7994-01 1 152285755 152285755 A G FLG Missense_Mutation p.V536A 0.20 benign(0.056) TCGA-55-7994-01 1 153279620 153279620 T C PGLYRP3 Missense_Mutation p.Q60R 0.19 tolerated(0.19) benign(0.05) TCGA-55-7994-01 1 153657501 153657501 G A NPR1 Missense_Mutation p.E516K 0.32 tolerated(0.12) benign(0.004) TCGA-55-7994-01 1 154295835 154295835 G C AQP10 Missense_Mutation p.Q163H 0.42 deleterious(0.02) benign(0.33) TCGA-55-7994-01 1 154318803 154318803 G C ATP8B2 Missense_Mutation p.A992P 0.33 deleterious(0.01) probably_damaging(0.93) TCGA-55-7994-01 1 154471587 154471587 C A SHE Splice_Site p.X240_splice 0.22 TCGA-55-7994-01 1 154744779 154744779 C G KCNN3 Missense_Mutation p.A374P 0.30 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 1 155254516 155254516 C T HCN3 Silent p.L353L 0.21 TCGA-55-7994-01 1 156230260 156230260 C - SMG5 Frame_Shift_Del p.L756Sfs*4 0.18 TCGA-55-7994-01 1 156309491 156309492 - T TSACC 5'UTR 0.30 TCGA-55-7994-01 1 156524106 156524106 G - IQGAP3 Frame_Shift_Del p.R457Gfs*11 0.38 TCGA-55-7994-01 1 156812206 156812206 A - INSRR Frame_Shift_Del p.L1074Cfs*19 0.16 TCGA-55-7994-01 1 156879870 156879870 G A PEAR1 Missense_Mutation p.G550R 0.36 deleterious(0) probably_damaging(1) TCGA-55-7994-01 1 156931505 156931505 C T ARHGEF11 Silent p.G401G 0.38 TCGA-55-7994-01 1 157494147 157494147 G TT FCRL5 Frame_Shift_Ins p.H721Kfs*8 0.18 TCGA-55-7994-01 1 157740261 157740261 C G FCRL2 Missense_Mutation p.S83T 0.33 tolerated(1) benign(0.014) TCGA-55-7994-01 1 157771975 157771975 A C FCRL1 Missense_Mutation p.S206A 0.12 tolerated(0.05) probably_damaging(0.948) TCGA-55-7994-01 1 158226844 158226844 C A CD1A Silent p.V291V 0.36 TCGA-55-7994-01 1 158299245 158299245 C A CD1B Silent p.L267L 0.11 TCGA-55-7994-01 1 158581117 158581117 C A SPTA1 Silent p.R2399R 0.24 TCGA-55-7994-01 1 158624535 158624535 G T SPTA1 Missense_Mutation p.Q968K 0.15 deleterious(0.02) benign(0.065) TCGA-55-7994-01 1 158639266 158639266 C A SPTA1 Nonsense_Mutation p.E589* 0.18 TCGA-55-7994-01 1 158655095 158655095 C T SPTA1 Missense_Mutation p.E23K 0.05 deleterious(0.01) benign(0.299) TCGA-55-7994-01 1 159832391 159832391 G A VSIG8 5'UTR 0.32 TCGA-55-7994-01 1 16073381 16073381 C A TMEM82 Silent p.P259P 0.21 TCGA-55-7994-01 1 161494895 161494895 C A HSPA6 Silent p.P149P 0.12 TCGA-55-7994-01 1 161514662 161514662 G T FCGR3A Missense_Mutation p.L172M 0.16 tolerated(0.07) benign(0.368) TCGA-55-7994-01 1 161641210 161641210 C A FCGR2B Silent p.L54L 0.30 TCGA-55-7994-01 1 162473555 162473555 T C UHMK1 Silent p.S255S 0.10 TCGA-55-7994-01 1 162473556 162473556 G T UHMK1 Missense_Mutation p.A256S 0.10 tolerated(0.13) benign(0.081) TCGA-55-7994-01 1 163317666 163317666 A T NUF2 Silent p.T354T 0.36 TCGA-55-7994-01 1 16351313 16351313 C T CLCNKA Silent p.S95S 0.18 TCGA-55-7994-01 1 165218645 165218645 C A LMX1A Missense_Mutation p.G166C 0.18 tolerated(0.09) possibly_damaging(0.572) TCGA-55-7994-01 1 166819654 166819654 G T POGK 3'UTR 0.13 TCGA-55-7994-01 1 166990373 166990373 G T MAEL Nonsense_Mutation p.E365* 0.14 TCGA-55-7994-01 1 167097391 167097391 C T DUSP27 Missense_Mutation p.S1008L 0.10 deleterious(0) benign(0.424) TCGA-55-7994-01 1 168012315 168012315 G T DCAF6 Missense_Mutation p.G594C 0.35 deleterious_low_confidence(0.02) benign(0.003) TCGA-55-7994-01 1 17026500 17026500 C A ESPNP RNA 0.09 TCGA-55-7994-01 1 171254536 171254536 C A FMO1 Silent p.A484A 0.19 TCGA-55-7994-01 1 172348233 172348233 C T DNM3 Missense_Mutation p.R657C 0.26 deleterious(0) probably_damaging(0.99) TCGA-55-7994-01 1 17265550 17265550 C A CROCC Silent p.P507P 0.12 TCGA-55-7994-01 1 175087839 175087839 G A TNN Silent p.V843V 0.31 TCGA-55-7994-01 1 176668668 176668668 C T PAPPA2 Missense_Mutation p.P1060L 0.40 deleterious(0) probably_damaging(0.911) TCGA-55-7994-01 1 17668440 17668440 G T PADI4 Missense_Mutation p.G219C 0.26 deleterious(0.02) benign(0.06) TCGA-55-7994-01 1 176845761 176845761 C A ASTN1 Missense_Mutation p.W1125C 0.25 deleterious(0.01) probably_damaging(0.993) TCGA-55-7994-01 1 17690070 17690070 C A PADI4 Silent p.P604P 0.14 TCGA-55-7994-01 1 177000010 177000010 T C ASTN1 Missense_Mutation p.H315R 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.697) TCGA-55-7994-01 1 180971743 180971743 C A STX6 Missense_Mutation p.R100M 0.22 tolerated(0.06) possibly_damaging(0.792) TCGA-55-7994-01 1 181480627 181480627 T A CACNA1E Missense_Mutation p.F165I 0.11 deleterious(0) possibly_damaging(0.637) TCGA-55-7994-01 1 181767564 181767564 C A CACNA1E Missense_Mutation p.A2179E 0.33 tolerated(0.07) benign(0.006) TCGA-55-7994-01 1 182554782 182554782 T G RNASEL Missense_Mutation p.Q387P 0.18 tolerated(0.05) probably_damaging(0.917) TCGA-55-7994-01 1 183895323 183895323 C G RGL1 Missense_Mutation p.S770C 0.18 deleterious(0.05) possibly_damaging(0.563) TCGA-55-7994-01 1 186275958 186275958 C G PRG4 Silent p.T369T 0.39 TCGA-55-7994-01 1 196749043 196749043 C T CFHR3 Nonsense_Mutation p.Q124* 0.20 TCGA-55-7994-01 1 197055933 197055933 C A ASPM Missense_Mutation p.R3444I 0.12 deleterious(0) probably_damaging(0.993) TCGA-55-7994-01 1 19992680 19992680 C T HTR6 Missense_Mutation p.A145V 0.18 tolerated(0.95) benign(0.063) TCGA-55-7994-01 1 200978549 200978549 C G KIF21B Missense_Mutation p.E37Q 0.21 deleterious(0) probably_damaging(0.988) TCGA-55-7994-01 1 20412692 20412692 C A PLA2G5 Silent p.R53R 0.28 TCGA-55-7994-01 1 204438486 204438486 C A PIK3C2B Missense_Mutation p.G149C 0.22 tolerated_low_confidence(0.12) benign(0.371) TCGA-55-7994-01 1 204506586 204506586 G C MDM4 Missense_Mutation p.Q124H 0.18 deleterious(0.01) possibly_damaging(0.827) TCGA-55-7994-01 1 204951051 204951051 C A NFASC Silent p.T791T 0.21 TCGA-55-7994-01 1 205022309 205022309 C G CNTN2 5'UTR 0.11 TCGA-55-7994-01 1 205273623 205273623 C A NUAK2 Missense_Mutation p.R281L 0.25 deleterious(0) probably_damaging(0.959) TCGA-55-7994-01 1 206611421 206611421 A G SRGAP2 Missense_Mutation p.I495V 0.09 tolerated(0.6) benign(0.003) TCGA-55-7994-01 1 213146048 213146048 C T VASH2 Silent p.G164G 0.28 TCGA-55-7994-01 1 214184965 214184966 - G PROX1 Frame_Shift_Ins p.V647Gfs*5 0.16 TCGA-55-7994-01 1 214820452 214820452 C A CENPF Silent p.G2513G 0.41 TCGA-55-7994-01 1 214832271 214832271 G T CENPF Missense_Mutation p.R3014L 0.19 possibly_damaging(0.738) TCGA-55-7994-01 1 215768784 215768784 G T KCTD3 Missense_Mutation p.V302L 0.21 deleterious(0) benign(0.17) TCGA-55-7994-01 1 215823935 215823935 A T USH2A Missense_Mutation p.V4781E 0.14 possibly_damaging(0.623) TCGA-55-7994-01 1 215847607 215847607 A - USH2A Frame_Shift_Del p.L4549* 0.16 TCGA-55-7994-01 1 216256866 216256866 A C USH2A Missense_Mutation p.F1744V 0.24 probably_damaging(0.991) TCGA-55-7994-01 1 216420315 216420315 G C USH2A Silent p.V807V 0.30 TCGA-55-7994-01 1 220193330 220193330 C A EPRS Missense_Mutation p.W450L 0.18 deleterious(0) probably_damaging(1) TCGA-55-7994-01 1 22077997 22077997 T C USP48 Intron 0.19 TCGA-55-7994-01 1 226026966 226026966 G A EPHX1 Missense_Mutation p.R214Q 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-55-7994-01 1 226827305 226827305 C - ITPKB Frame_Shift_Del p.V836Sfs*16 0.29 TCGA-55-7994-01 1 227153107 227153107 A T ADCK3 Missense_Mutation p.Q195L 0.21 deleterious(0.03) benign(0.068) TCGA-55-7994-01 1 227946760 227946760 C - SNAP47 Frame_Shift_Del p.P233Rfs*11 0.19 TCGA-55-7994-01 1 228468314 228468314 G T OBSCN Missense_Mutation p.D3101Y 0.29 possibly_damaging(0.811) TCGA-55-7994-01 1 228476023 228476023 G T OBSCN Missense_Mutation p.R3787M 0.16 possibly_damaging(0.717) TCGA-55-7994-01 1 228491448 228491448 G T OBSCN Missense_Mutation p.C4604F 0.20 probably_damaging(1) TCGA-55-7994-01 1 228503545 228503545 C T OBSCN Intron 0.30 TCGA-55-7994-01 1 228560770 228560770 G A OBSCN Missense_Mutation p.G8388S 0.23 possibly_damaging(0.768) TCGA-55-7994-01 1 22925442 22925442 C A EPHA8 Missense_Mutation p.R764S 0.11 deleterious(0) probably_damaging(0.948) TCGA-55-7994-01 1 229568585 229568585 C T ACTA1 Missense_Mutation p.D58N 0.21 deleterious_low_confidence(0.05) benign(0) TCGA-55-7994-01 1 229568586 229568586 G T ACTA1 Silent p.G57G 0.20 TCGA-55-7994-01 1 229588285 229588285 G A NUP133 Missense_Mutation p.P1029L 0.24 tolerated(0.33) benign(0.057) TCGA-55-7994-01 1 229606512 229606512 C T NUP133 Missense_Mutation p.G631R 0.18 deleterious(0.02) benign(0.021) TCGA-55-7994-01 1 22974271 22974271 G T C1QC Missense_Mutation p.D245Y 0.19 deleterious(0) probably_damaging(0.973) TCGA-55-7994-01 1 23235559 23235559 G T EPHB2 Missense_Mutation p.Q800H 0.51 deleterious(0) possibly_damaging(0.785) TCGA-55-7994-01 1 232942300 232942300 C A MAP10 Missense_Mutation p.P511T 0.33 tolerated(0.13) possibly_damaging(0.558) TCGA-55-7994-01 1 232943627 232943627 A T MAP10 Missense_Mutation p.Q953L 0.14 deleterious(0.01) possibly_damaging(0.73) TCGA-55-7994-01 1 236157154 236157154 C A NID1 Missense_Mutation p.C849F 0.30 deleterious(0) probably_damaging(0.998) TCGA-55-7994-01 1 236914818 236914818 G A ACTN2 Missense_Mutation p.D569N 0.18 tolerated(0.16) probably_damaging(0.996) TCGA-55-7994-01 1 237659886 237659886 G T RYR2 Silent p.V679V 0.34 TCGA-55-7994-01 1 237664160 237664160 G T RYR2 Missense_Mutation p.D785Y 0.28 probably_damaging(0.973) TCGA-55-7994-01 1 237777747 237777747 T C RYR2 Silent p.N1773N 0.19 TCGA-55-7994-01 1 237995906 237995906 G A RYR2 Missense_Mutation p.G4955R 0.23 probably_damaging(0.979) TCGA-55-7994-01 1 238053194 238053194 G T ZP4 Missense_Mutation p.L125M 0.23 tolerated(0.08) benign(0.133) TCGA-55-7994-01 1 240072190 240072190 G A CHRM3 Missense_Mutation p.R480K 0.28 tolerated(0.06) benign(0.124) TCGA-55-7994-01 1 241031894 241031894 C A RGS7 Missense_Mutation p.R201M 0.18 deleterious(0) probably_damaging(0.994) TCGA-55-7994-01 1 244580977 244580977 C A ADSS Missense_Mutation p.L341F 0.21 tolerated(0.05) probably_damaging(0.994) TCGA-55-7994-01 1 247014368 247014368 C A AHCTF1 Missense_Mutation p.S1656I 0.19 deleterious(0.03) possibly_damaging(0.564) TCGA-55-7994-01 1 247014369 247014369 T A AHCTF1 Missense_Mutation p.S1656C 0.18 deleterious(0) probably_damaging(0.946) TCGA-55-7994-01 1 247151041 247151041 T C ZNF695 Missense_Mutation p.E259G 0.24 deleterious(0) benign(0.403) TCGA-55-7994-01 1 247615142 247615142 G T OR2B11 Missense_Mutation p.A48D 0.19 deleterious(0) benign(0.054) TCGA-55-7994-01 1 247835425 247835425 G C OR13G1 Missense_Mutation p.H307D 0.17 deleterious(0.01) benign(0.103) TCGA-55-7994-01 1 247875544 247875544 G T OR6F1 Missense_Mutation p.R172S 0.20 tolerated(0.06) benign(0.018) TCGA-55-7994-01 1 247920787 247920787 A C OR1C1 Missense_Mutation p.C308G 0.22 tolerated(0.54) benign(0) TCGA-55-7994-01 1 248343400 248343400 C A OR2M2 Missense_Mutation p.A38D 0.25 deleterious(0.01) benign(0.167) TCGA-55-7994-01 1 248343813 248343813 C A OR2M2 Missense_Mutation p.H176N 0.24 deleterious(0.03) benign(0.364) TCGA-55-7994-01 1 248343894 248343894 T C OR2M2 Missense_Mutation p.C203R 0.29 deleterious(0.01) probably_damaging(1) TCGA-55-7994-01 1 248487598 248487598 G T OR2M7 Silent p.S91S 0.23 TCGA-55-7994-01 1 248512087 248512087 C T OR14C36 Missense_Mutation p.S4L 0.24 tolerated(0.44) benign(0.046) TCGA-55-7994-01 1 248525168 248525168 A T OR2T4 Missense_Mutation p.S96C 0.18 deleterious(0) possibly_damaging(0.88) TCGA-55-7994-01 1 248569331 248569331 C A OR2T1 Missense_Mutation p.F12L 0.20 tolerated_low_confidence(0.09) benign(0) TCGA-55-7994-01 1 248616575 248616575 G A OR2T2 Missense_Mutation p.M159I 0.12 tolerated(0.79) benign(0.01) TCGA-55-7994-01 1 248789864 248789864 G C OR2T11 Missense_Mutation p.T189R 0.21 deleterious(0) probably_damaging(1) TCGA-55-7994-01 1 248845536 248845536 G T OR14I1 Missense_Mutation p.L24M 0.24 deleterious(0.02) possibly_damaging(0.829) TCGA-55-7994-01 1 248845548 248845548 C - OR14I1 Frame_Shift_Del p.E20Sfs*12 0.22 TCGA-55-7994-01 1 24995964 24995964 C T SRRM1 Missense_Mutation p.P697L 0.36 unknown(0) TCGA-55-7994-01 1 26663747 26663747 C G AIM1L Silent p.R382R 0.12 TCGA-55-7994-01 1 26688288 26688288 C A ZNF683 Missense_Mutation p.D457Y 0.15 deleterious(0) probably_damaging(0.971) TCGA-55-7994-01 1 26795511 26795511 A T DHDDS Silent p.T298T 0.29 TCGA-55-7994-01 1 26888135 26888135 A G RPS6KA1 Missense_Mutation p.E533G 0.47 tolerated(0.11) benign(0.207) TCGA-55-7994-01 1 32084919 32084919 A G HCRTR1 Silent p.P42P 0.14 TCGA-55-7994-01 1 32280061 32280061 C T SPOCD1 Missense_Mutation p.G292R 0.34 tolerated(0.32) benign(0.042) TCGA-55-7994-01 1 32280167 32280167 G T SPOCD1 Nonsense_Mutation p.C256* 0.43 TCGA-55-7994-01 1 32650175 32650176 - T TXLNA Frame_Shift_Ins p.E186* 0.31 TCGA-55-7994-01 1 3347458 3347458 G T PRDM16 Missense_Mutation p.G1103C 0.12 deleterious(0) possibly_damaging(0.622) TCGA-55-7994-01 1 34011693 34011693 G T CSMD2 Nonsense_Mutation p.S2871* 0.40 TCGA-55-7994-01 1 34112422 34112422 G T CSMD2 Missense_Mutation p.P1494T 0.27 deleterious(0.03) probably_damaging(0.964) TCGA-55-7994-01 1 34677945 34677945 C - C1orf94 Frame_Shift_Del p.R555Efs*5 0.21 TCGA-55-7994-01 1 36181533 36181533 G - C1orf216 Frame_Shift_Del p.C131Vfs*43 0.20 TCGA-55-7994-01 1 36367831 36367831 G T AGO1 Missense_Mutation p.Q430H 0.22 tolerated(0.57) possibly_damaging(0.62) TCGA-55-7994-01 1 36785304 36785304 C T SH3D21 Missense_Mutation p.A347V 0.67 deleterious(0) possibly_damaging(0.878) TCGA-55-7994-01 1 39910445 39910445 C T MACF1 Nonsense_Mutation p.Q4456* 0.17 TCGA-55-7994-01 1 40124892 40124892 C A NT5C1A Silent p.G336G 0.28 TCGA-55-7994-01 1 40945020 40945020 G T ZFP69 5'UTR 0.38 TCGA-55-7994-01 1 42048632 42048632 T A HIVEP3 Missense_Mutation p.T613S 0.51 benign(0.05) TCGA-55-7994-01 1 42619208 42619208 C A GUCA2B Silent p.I29I 0.18 TCGA-55-7994-01 1 43166675 43166675 G A YBX1 Missense_Mutation p.G322R 0.42 tolerated(0.17) benign(0.028) TCGA-55-7994-01 1 43773165 43773165 C A TIE1 Silent p.R279R 0.38 TCGA-55-7994-01 1 43869347 43869347 A T SZT2 Missense_Mutation p.R77W 0.47 tolerated(0.17) probably_damaging(0.982) TCGA-55-7994-01 1 43869348 43869348 G A SZT2 Missense_Mutation p.R77K 0.47 tolerated(0.27) possibly_damaging(0.78) TCGA-55-7994-01 1 43903514 43903514 G T SZT2 Missense_Mutation p.R2093L 0.15 deleterious(0) probably_damaging(0.997) TCGA-55-7994-01 1 44804790 44804790 G A ERI3 Missense_Mutation p.P139L 0.18 deleterious(0.01) benign(0.441) TCGA-55-7994-01 1 45798269 45798269 T G MUTYH Missense_Mutation p.I220L 0.14 deleterious(0.01) probably_damaging(0.969) TCGA-55-7994-01 1 46972776 46972776 C A DMBX1 Missense_Mutation p.Q32K 0.39 deleterious(0.02) probably_damaging(0.931) TCGA-55-7994-01 1 4772524 4772524 G T AJAP1 Silent p.P198P 0.41 TCGA-55-7994-01 1 4772703 4772703 G T AJAP1 Missense_Mutation p.S258I 0.15 deleterious(0.01) possibly_damaging(0.455) TCGA-55-7994-01 1 48698140 48698140 C A SLC5A9 Silent p.V358V 0.51 TCGA-55-7994-01 1 53547716 53547716 G T PODN Missense_Mutation p.Q623H 0.51 tolerated(0.17) probably_damaging(0.993) TCGA-55-7994-01 1 55166824 55166824 G A MROH7 Silent p.K1038K 0.12 TCGA-55-7994-01 1 55562681 55562681 G A USP24 Silent p.I1960I 0.49 TCGA-55-7994-01 1 57399075 57399075 C A C8B Missense_Mutation p.E495D 0.44 tolerated(0.11) probably_damaging(0.944) TCGA-55-7994-01 1 62739726 62739726 C G KANK4 Silent p.S350S 0.13 TCGA-55-7994-01 1 65349110 65349110 T C JAK1 Missense_Mutation p.M19V 0.28 tolerated(0.15) benign(0.156) TCGA-55-7994-01 1 67561050 67561050 T A C1orf141 Missense_Mutation p.R157S 0.31 tolerated(0.17) possibly_damaging(0.765) TCGA-55-7994-01 1 67685346 67685346 T C IL23R Silent p.C296C 0.35 TCGA-55-7994-01 1 68896850 68896850 G T RPE65 Missense_Mutation p.L450M 0.20 tolerated(0.92) benign(0.144) TCGA-55-7994-01 1 70397207 70397207 C G LRRC7 Missense_Mutation p.A184G 0.16 deleterious(0.01) benign(0.007) TCGA-55-7994-01 1 70486708 70486708 A T LRRC7 Missense_Mutation p.S443C 0.19 deleterious(0) probably_damaging(0.993) TCGA-55-7994-01 1 71418623 71418623 C T PTGER3 Silent p.V408V 0.15 TCGA-55-7994-01 1 71513118 71513118 C - PTGER3 Frame_Shift_Del p.G48Dfs*88 0.31 TCGA-55-7994-01 1 72163794 72163795 - A NEGR1 Frame_Shift_Ins p.L188Ffs*15 0.11 TCGA-55-7994-01 1 75805313 75805313 C G SLC44A5 Missense_Mutation p.D19H 0.31 deleterious(0.01) benign(0.302) TCGA-55-7994-01 1 76257940 76257940 G T RABGGTB Missense_Mutation p.W218C 0.15 deleterious(0) probably_damaging(1) TCGA-55-7994-01 1 76272757 76272757 G T MSH4 Missense_Mutation p.M173I 0.38 tolerated(0.33) benign(0.029) TCGA-55-7994-01 1 78444628 78444628 C G FUBP1 Missense_Mutation p.G21R 0.48 deleterious(0) possibly_damaging(0.802) TCGA-55-7994-01 1 7848163 7848163 A T PER3 Missense_Mutation p.Q150L 0.15 deleterious(0.01) benign(0.403) TCGA-55-7994-01 1 79392733 79392733 A T ELTD1 Silent p.P307P 0.28 TCGA-55-7994-01 1 79392734 79392734 G C ELTD1 Missense_Mutation p.P307R 0.28 tolerated(0.18) benign(0.014) TCGA-55-7994-01 1 79404905 79404905 T C ELTD1 Missense_Mutation p.I122V 0.16 tolerated(0.21) benign(0.008) TCGA-55-7994-01 1 8390598 8390598 G A SLC45A1 Missense_Mutation p.G349S 0.39 tolerated(0.19) probably_damaging(1) TCGA-55-7994-01 1 86900248 86900248 C G CLCA2 Missense_Mutation p.N264K 0.18 deleterious(0) probably_damaging(1) TCGA-55-7994-01 1 86905997 86905997 C A CLCA2 Nonsense_Mutation p.S457* 0.39 TCGA-55-7994-01 1 86959282 86959282 G A CLCA1 Silent p.K560K 0.39 TCGA-55-7994-01 1 87045773 87045773 A G CLCA4 Silent p.E835E 0.21 TCGA-55-7994-01 1 89616195 89616195 T A GBP7 Missense_Mutation p.K230I 0.40 deleterious(0.04) possibly_damaging(0.627) TCGA-55-7994-01 1 897850 897850 G C KLHL17 Missense_Mutation p.R276P 0.18 tolerated(0.06) probably_damaging(0.948) TCGA-55-7994-01 1 93091372 93091372 C T EVI5 Silent p.K533K 0.18 TCGA-55-7994-01 1 93300451 93300451 G T RPL5 Missense_Mutation p.G102V 0.19 deleterious(0) probably_damaging(0.962) TCGA-55-7994-01 1 94522205 94522205 C T ABCA4 Silent p.L778L 0.15 TCGA-55-7994-01 1 98015165 98015165 G A DPYD Missense_Mutation p.S492L 0.19 deleterious(0) possibly_damaging(0.879) TCGA-55-7994-01 1 99772486 99772486 C A LPPR4 Missense_Mutation p.P738T 0.36 tolerated(0.08) possibly_damaging(0.821) TCGA-55-7994-01 1 99772487 99772487 C A LPPR4 Missense_Mutation p.P738H 0.35 deleterious(0.01) probably_damaging(0.955) TCGA-55-7994-01 20 10030080 10030080 G T ANKEF1 Missense_Mutation p.R288M 0.15 deleterious(0) probably_damaging(0.929) TCGA-55-7994-01 20 10582427 10582427 C T SLX4IP Missense_Mutation p.A122V 0.26 tolerated(0.13) benign(0.081) TCGA-55-7994-01 20 13845876 13845876 T C SEL1L2 Silent p.T472T 0.27 TCGA-55-7994-01 20 20493244 20493244 C T RALGAPA2 Missense_Mutation p.G1590E 0.38 tolerated(1) benign(0) TCGA-55-7994-01 20 23360514 23360514 T C NAPB Missense_Mutation p.K242R 0.15 tolerated(0.13) probably_damaging(0.991) TCGA-55-7994-01 20 2398110 2398110 G T TGM6 Silent p.R523R 0.33 TCGA-55-7994-01 20 25193939 25193939 A T ENTPD6 Missense_Mutation p.Q165L 0.18 deleterious(0.04) benign(0.102) TCGA-55-7994-01 20 25443148 25443148 C A NINL Missense_Mutation p.Q1151H 0.17 deleterious(0) probably_damaging(0.996) TCGA-55-7994-01 20 2777718 2777718 C A CPXM1 Missense_Mutation p.E285D 0.29 tolerated(0.17) benign(0.002) TCGA-55-7994-01 20 2844012 2844012 A T VPS16 Missense_Mutation p.S482C 0.16 deleterious(0) possibly_damaging(0.755) TCGA-55-7994-01 20 29993974 29993974 G A DEFB121 5'UTR 0.33 TCGA-55-7994-01 20 30345265 30345265 G T TPX2 5'UTR 0.19 TCGA-55-7994-01 20 30497722 30497722 G T TTLL9 Missense_Mutation p.K167N 0.20 deleterious(0) probably_damaging(1) TCGA-55-7994-01 20 31021287 31021287 A G ASXL1 Missense_Mutation p.E429G 0.44 deleterious(0.01) possibly_damaging(0.744) TCGA-55-7994-01 20 31876596 31876596 G A BPIFB1 Silent p.Q55Q 0.55 TCGA-55-7994-01 20 33623090 33623090 C A TRPC4AP Missense_Mutation p.G296V 0.07 deleterious(0) probably_damaging(0.987) TCGA-55-7994-01 20 34761806 34761806 G T EPB41L1 Missense_Mutation p.G36V 0.27 tolerated_low_confidence(0.07) benign(0.055) TCGA-55-7994-01 20 34797439 34797439 G A EPB41L1 Silent p.E566E 0.33 TCGA-55-7994-01 20 3653227 3653227 G T ADAM33 Missense_Mutation p.P453Q 0.34 tolerated(0.16) benign(0.185) TCGA-55-7994-01 20 36634691 36634691 G A TTI1 Missense_Mutation p.T804I 0.41 tolerated(0.5) benign(0.003) TCGA-55-7994-01 20 3674160 3674160 G T SIGLEC1 Missense_Mutation p.R1148S 0.26 tolerated(0.09) benign(0.064) TCGA-55-7994-01 20 36948612 36948612 G C BPI Missense_Mutation p.G235A 0.47 tolerated(0.19) benign(0.065) TCGA-55-7994-01 20 36982794 36982794 G T LBP Missense_Mutation p.S160I 0.21 deleterious(0) probably_damaging(0.953) TCGA-55-7994-01 20 37356227 37356227 G T SLC32A1 Nonsense_Mutation p.E175* 0.30 TCGA-55-7994-01 20 37576528 37576528 G T FAM83D Missense_Mutation p.V251F 0.30 deleterious(0) probably_damaging(0.993) TCGA-55-7994-01 20 39990317 39990317 T G EMILIN3 Missense_Mutation p.Q631P 0.36 deleterious(0.01) benign(0.05) TCGA-55-7994-01 20 40727177 40727177 C A PTPRT Missense_Mutation p.A1244S 0.12 tolerated(0.38) probably_damaging(0.996) TCGA-55-7994-01 20 40980791 40980791 G T PTPRT Silent p.T565T 0.23 TCGA-55-7994-01 20 42164825 42164825 G T L3MBTL1 Nonsense_Mutation p.E650* 0.41 TCGA-55-7994-01 20 422529 422529 C G TBC1D20 Missense_Mutation p.V166L 0.23 tolerated(0.88) benign(0.035) TCGA-55-7994-01 20 43850567 43850567 A G SEMG2 Silent p.Q98Q 0.26 TCGA-55-7994-01 20 44533604 44533604 G T PLTP Missense_Mutation p.Q287K 0.10 tolerated(0.72) benign(0.012) TCGA-55-7994-01 20 44669089 44669089 G A SLC12A5 Missense_Mutation p.M253I 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-55-7994-01 20 44839089 44839089 C A CDH22 Silent p.V381V 0.26 TCGA-55-7994-01 20 44839164 44839164 C A CDH22 Silent p.V356V 0.17 TCGA-55-7994-01 20 46305285 46305285 G T SULF2 Missense_Mutation p.L445M 0.40 tolerated(0.05) probably_damaging(1) TCGA-55-7994-01 20 46305829 46305829 C A SULF2 Nonsense_Mutation p.E415* 0.12 TCGA-55-7994-01 20 47688840 47688840 C A CSE1L Silent p.G262G 0.17 TCGA-55-7994-01 20 47989977 47989977 C A KCNB1 Missense_Mutation p.G707V 0.42 tolerated_low_confidence(0.28) benign(0.01) TCGA-55-7994-01 20 47989978 47989978 C A KCNB1 Nonsense_Mutation p.G707* 0.43 TCGA-55-7994-01 20 49510110 49510110 C T ADNP Missense_Mutation p.G381R 0.16 deleterious(0.05) possibly_damaging(0.885) TCGA-55-7994-01 20 49620726 49620726 G T KCNG1 Silent p.S464S 0.17 TCGA-55-7994-01 20 49626312 49626312 C T KCNG1 Silent p.A188A 0.18 TCGA-55-7994-01 20 50769916 50769916 G T ZFP64 Nonsense_Mutation p.S272* 0.36 TCGA-55-7994-01 20 52645231 52645231 C A BCAS1 Silent p.P141P 0.24 TCGA-55-7994-01 20 55033432 55033432 C A CASS4 Missense_Mutation p.Q664K 0.34 tolerated(0.07) possibly_damaging(0.457) TCGA-55-7994-01 20 55746136 55746136 G T BMP7 Missense_Mutation p.P392H 0.31 deleterious(0) probably_damaging(1) TCGA-55-7994-01 20 55758946 55758946 G A BMP7 Silent p.L264L 0.10 TCGA-55-7994-01 20 55982704 55982704 G T RBM38 Silent p.P174P 0.44 TCGA-55-7994-01 20 56083789 56083789 C A CTCFL Missense_Mutation p.C516F 0.19 deleterious(0) probably_damaging(1) TCGA-55-7994-01 20 57415359 57415359 C A RP4-806M20.3 5'Flank 0.24 TCGA-55-7994-01 20 57829030 57829030 A T ZNF831 Missense_Mutation p.Q1422H 0.38 tolerated(0.14) benign(0.003) TCGA-55-7994-01 20 5897567 5897567 T A CHGB Splice_Site p.X64_splice 0.19 TCGA-55-7994-01 20 60791829 60791829 C A HRH3 Nonsense_Mutation p.E191* 0.25 TCGA-55-7994-01 20 61143625 61143625 G A C20orf166 5'Flank 0.18 TCGA-55-7994-01 20 61391429 61391429 G C NTSR1 Missense_Mutation p.S356T 0.19 deleterious(0.04) probably_damaging(0.954) TCGA-55-7994-01 20 61588855 61588855 C - SLC17A9 Frame_Shift_Del p.P108Hfs*6 0.29 TCGA-55-7994-01 21 10862850 10862850 C A IGHV1OR21-1 Missense_Mutation p.T49N 0.38 deleterious(0.03) benign(0.066) TCGA-55-7994-01 21 10863013 10863013 C A IGHV1OR21-1 Missense_Mutation p.S103R 0.20 tolerated(0.16) benign(0.041) TCGA-55-7994-01 21 11021201 11021201 G A BAGE2 RNA 0.05 TCGA-55-7994-01 21 11021203 11021203 A C BAGE2 RNA 0.05 TCGA-55-7994-01 21 11038912 11038912 G A BAGE2 RNA 0.04 TCGA-55-7994-01 21 11047594 11047594 G T BAGE2 Intron 0.08 TCGA-55-7994-01 21 15882746 15882746 C A SAMSN1 Missense_Mutation p.R217L 0.43 deleterious(0) probably_damaging(1) TCGA-55-7994-01 21 28296328 28296328 C A ADAMTS5 3'UTR 0.62 TCGA-55-7994-01 21 31986154 31986154 C A KRTAP6-1 Missense_Mutation p.G24C 0.47 unknown(0) TCGA-55-7994-01 21 32007737 32007737 G T KRTAP20-2 Missense_Mutation p.R52L 0.60 unknown(0) TCGA-55-7994-01 21 32253685 32253685 C A KRTAP11-1 Silent p.L53L 0.47 TCGA-55-7994-01 21 37650653 37650653 A T DOPEY2 Missense_Mutation p.H1990L 0.50 deleterious(0) possibly_damaging(0.627) TCGA-55-7994-01 21 37785450 37785450 A G CHAF1B Missense_Mutation p.T444A 0.76 tolerated(0.84) benign(0) TCGA-55-7994-01 21 40571250 40571250 G A BRWD1 Nonsense_Mutation p.Q1698* 0.21 TCGA-55-7994-01 21 43771090 43771090 G T TFF2 5'UTR 0.51 TCGA-55-7994-01 21 44182340 44182340 G T PDE9A Missense_Mutation p.Q411H 0.17 tolerated(0.05) benign(0.113) TCGA-55-7994-01 21 45833830 45833830 A G TRPM2 Missense_Mutation p.K1007E 0.38 deleterious(0) possibly_damaging(0.692) TCGA-55-7994-01 21 45959614 45959614 G A KRTAP10-1 Silent p.S140S 0.42 TCGA-55-7994-01 21 45994433 45994433 C A KRTAP10-4 Nonsense_Mutation p.C266* 0.24 TCGA-55-7994-01 21 46047094 46047094 C G KRTAP10-9 Silent p.A2A 0.33 TCGA-55-7994-01 21 46888395 46888395 C G COL18A1 Missense_Mutation p.Q296E 0.19 unknown(0) TCGA-55-7994-01 21 47831163 47831163 G A PCNT Missense_Mutation p.E1726K 0.32 possibly_damaging(0.636) TCGA-55-7994-01 21 47986499 47986499 G T DIP2A Missense_Mutation p.G1456W 0.50 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 22 16267071 16267071 C A POTEH Nonsense_Mutation p.G460* 0.07 TCGA-55-7994-01 22 17119557 17119557 G A TPTEP1 RNA 0.36 TCGA-55-7994-01 22 17468899 17468899 C A GAB4 Missense_Mutation p.G213W 0.39 deleterious(0.01) probably_damaging(0.979) TCGA-55-7994-01 22 17600988 17600988 G A CECR6 Missense_Mutation p.R344C 0.04 deleterious(0) probably_damaging(0.953) TCGA-55-7994-01 22 17601123 17601123 C A CECR6 Missense_Mutation p.G299W 0.26 deleterious_low_confidence(0) unknown(0) TCGA-55-7994-01 22 17672611 17672611 A G CECR1 Silent p.P281P 0.16 TCGA-55-7994-01 22 19502485 19502485 C T CDC45 Intron 0.34 TCGA-55-7994-01 22 20796526 20796526 T A KLHL22 Missense_Mutation p.D580V 0.18 deleterious(0.04) benign(0.031) TCGA-55-7994-01 22 21377680 21377680 G A P2RX6 Missense_Mutation p.G252E 0.19 tolerated(0.5) benign(0.434) TCGA-55-7994-01 22 21384316 21384316 C T SLC7A4 Missense_Mutation p.S436N 0.42 tolerated(0.44) benign(0.002) TCGA-55-7994-01 22 22677187 22677187 A T IGLV1-51 Missense_Mutation p.N72I 0.03 deleterious(0.01) benign(0.274) TCGA-55-7994-01 22 22724374 22724374 C A IGLV7-46 Silent p.G90G 0.21 TCGA-55-7994-01 22 23214200 23214200 C A IGLV4-3 Silent p.G119G 0.45 TCGA-55-7994-01 22 24829648 24829648 C G ADORA2A Missense_Mutation p.I92M 0.19 deleterious(0) probably_damaging(0.995) TCGA-55-7994-01 22 24896177 24896177 C A UPB1 Silent p.P69P 0.17 TCGA-55-7994-01 22 26270253 26270253 G T MYO18B Missense_Mutation p.V1318F 0.34 deleterious(0) probably_damaging(1) TCGA-55-7994-01 22 26286791 26286791 G T MYO18B Missense_Mutation p.E1461D 0.37 tolerated(0.63) possibly_damaging(0.465) TCGA-55-7994-01 22 26692999 26692999 G T SEZ6L Missense_Mutation p.R372L 0.32 deleterious(0) probably_damaging(0.963) TCGA-55-7994-01 22 29726403 29726403 C T AP1B1 Silent p.A910A 0.07 TCGA-55-7994-01 22 29833713 29833713 A G RFPL1 5'Flank 0.55 TCGA-55-7994-01 22 29838094 29838094 C G RFPL1 Missense_Mutation p.P313A 0.19 deleterious(0.03) possibly_damaging(0.698) TCGA-55-7994-01 22 30951811 30951811 C T GAL3ST1 Missense_Mutation p.C134Y 0.15 deleterious(0.03) probably_damaging(0.997) TCGA-55-7994-01 22 32554986 32554986 G T C22orf42 Missense_Mutation p.L73M 0.42 deleterious_low_confidence(0.05) benign(0.001) TCGA-55-7994-01 22 35812667 35812667 G T MCM5 Missense_Mutation p.V484F 0.19 deleterious(0) probably_damaging(0.996) TCGA-55-7994-01 22 36597974 36597974 T C APOL4 Intron 0.52 TCGA-55-7994-01 22 37211187 37211187 C G PVALB Missense_Mutation p.D52H 0.13 deleterious(0) probably_damaging(1) TCGA-55-7994-01 22 38522389 38522389 G A PLA2G6 Silent p.D472D 0.06 TCGA-55-7994-01 22 39104911 39104911 G T GTPBP1 Missense_Mutation p.R85M 0.12 deleterious(0.01) benign(0.313) TCGA-55-7994-01 22 39770330 39770330 A G SYNGR1 Missense_Mutation p.I37V 0.27 deleterious(0.03) possibly_damaging(0.897) TCGA-55-7994-01 22 40055019 40055019 G T CACNA1I Missense_Mutation p.R743L 0.38 deleterious(0) possibly_damaging(0.569) TCGA-55-7994-01 22 42209753 42209753 A T CCDC134 Splice_Site p.X165_splice 0.23 TCGA-55-7994-01 22 42807430 42807430 G A NFAM1 Missense_Mutation p.T145I 0.33 tolerated(0.22) benign(0.212) TCGA-55-7994-01 22 43617262 43617262 C T SCUBE1 Missense_Mutation p.R489H 0.20 deleterious(0.04) probably_damaging(0.932) TCGA-55-7994-01 22 45198019 45198019 G A ARHGAP8 Missense_Mutation p.E170K 0.27 tolerated(0.06) possibly_damaging(0.657) TCGA-55-7994-01 22 45914640 45914640 C T FBLN1 Missense_Mutation p.P53L 0.29 tolerated(0.08) probably_damaging(0.975) TCGA-55-7994-01 22 47116862 47116862 C G CERK Missense_Mutation p.V65L 0.29 tolerated(0.45) benign(0.004) TCGA-55-7994-01 22 50297408 50297408 T A ALG12 3'UTR 0.46 TCGA-55-7994-01 22 50468872 50468872 C A TTLL8 Silent p.P746P 0.53 TCGA-55-7994-01 22 50720626 50720626 A G PLXNB2 Missense_Mutation p.L1035P 0.21 tolerated(0.14) probably_damaging(0.917) TCGA-55-7994-01 2 101086975 101086975 C A NMS Missense_Mutation p.P9T 0.16 tolerated(0.1) benign(0.007) TCGA-55-7994-01 2 101619266 101619266 G T RPL31 Nonsense_Mutation p.G35* 0.17 TCGA-55-7994-01 2 103128707 103128707 T C SLC9A4 Missense_Mutation p.W512R 0.21 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 2 108499191 108499191 G T RGPD4 Missense_Mutation p.V1710L 0.22 tolerated_low_confidence(1) benign(0.012) TCGA-55-7994-01 2 11284244 11284244 G - C2orf50 3'UTR 0.35 TCGA-55-7994-01 2 113258918 113258918 G T TTL Missense_Mutation p.R202L 0.26 deleterious(0) probably_damaging(0.923) TCGA-55-7994-01 2 113832388 113832388 A G IL1F10 Silent p.A69A 0.19 TCGA-55-7994-01 2 113950017 113950017 A T PSD4 Silent p.A563A 0.44 TCGA-55-7994-01 2 121747635 121747635 G A GLI2 Missense_Mutation p.R1382H 0.59 deleterious(0.02) benign(0.003) TCGA-55-7994-01 2 125204379 125204379 C A CNTNAP5 Silent p.G261G 0.13 TCGA-55-7994-01 2 125204428 125204428 G T CNTNAP5 Missense_Mutation p.G278C 0.32 deleterious(0) probably_damaging(0.981) TCGA-55-7994-01 2 125671753 125671753 G T CNTNAP5 Missense_Mutation p.R1270L 0.19 deleterious(0.01) benign(0.246) TCGA-55-7994-01 2 127952990 127952990 A T CYP27C1 Missense_Mutation p.L214I 0.23 tolerated(0.06) possibly_damaging(0.872) TCGA-55-7994-01 2 12880610 12880610 G T TRIB2 Missense_Mutation p.G241V 0.40 deleterious(0) probably_damaging(1) TCGA-55-7994-01 2 128936144 128936144 G T UGGT1 Splice_Site p.X1272_splice 0.38 TCGA-55-7994-01 2 130832597 130832597 G C POTEF Silent p.R816R 0.18 TCGA-55-7994-01 2 130949676 130949676 T G TUBA3E Missense_Mutation p.T361P 0.20 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-55-7994-01 2 132021374 132021374 G T POTEE Missense_Mutation p.M782I 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.526) TCGA-55-7994-01 2 132021375 132021375 G T POTEE Nonsense_Mutation p.E783* 0.18 TCGA-55-7994-01 2 133541800 133541800 C G NCKAP5 Missense_Mutation p.D862H 0.23 deleterious(0) probably_damaging(0.98) TCGA-55-7994-01 2 133542052 133542052 G T NCKAP5 Missense_Mutation p.H778N 0.17 tolerated(0.22) benign(0.076) TCGA-55-7994-01 2 136396346 136396346 C T R3HDM1 Missense_Mutation p.R327C 0.11 deleterious(0.01) possibly_damaging(0.762) TCGA-55-7994-01 2 136481666 136481666 G T R3HDM1 Missense_Mutation p.G1035V 0.29 deleterious(0) probably_damaging(1) TCGA-55-7994-01 2 138169364 138169364 G A THSD7B Missense_Mutation p.E961K 0.07 tolerated(0.06) possibly_damaging(0.486) TCGA-55-7994-01 2 138378296 138378296 G A THSD7B Missense_Mutation p.G1270S 0.18 tolerated(0.06) unknown(0) TCGA-55-7994-01 2 141093243 141093243 G T LRP1B Silent p.T4019T 0.31 TCGA-55-7994-01 2 141243076 141243076 C T LRP1B Silent p.A3087A 0.44 TCGA-55-7994-01 2 141274513 141274513 G T LRP1B Silent p.T2698T 0.33 TCGA-55-7994-01 2 145182404 145182404 C A ZEB2 Missense_Mutation p.G121V 0.17 deleterious(0) possibly_damaging(0.841) TCGA-55-7994-01 2 149247345 149247345 A T MBD5 Missense_Mutation p.M1149L 0.37 tolerated_low_confidence(0.43) unknown(0) TCGA-55-7994-01 2 149679736 149679736 C A KIF5C Missense_Mutation p.L53I 0.11 deleterious(0.01) benign(0.227) TCGA-55-7994-01 2 152484098 152484098 G A NEB Missense_Mutation p.T3361M 0.20 benign(0.169) TCGA-55-7994-01 2 155098697 155098697 G C GALNT13 Missense_Mutation p.A156P 0.14 tolerated(0.2) possibly_damaging(0.801) TCGA-55-7994-01 2 155102365 155102365 G C GALNT13 Missense_Mutation p.D243H 0.21 deleterious(0) benign(0.052) TCGA-55-7994-01 2 15607801 15607801 C G NBAS Missense_Mutation p.V669L 0.39 deleterious(0.03) possibly_damaging(0.729) TCGA-55-7994-01 2 15679433 15679433 C G NBAS Missense_Mutation p.D143H 0.38 deleterious(0) probably_damaging(1) TCGA-55-7994-01 2 159166103 159166103 G A CCDC148 Nonsense_Mutation p.Q318* 0.22 TCGA-55-7994-01 2 159195304 159195304 T C CCDC148 Missense_Mutation p.Y233C 0.28 tolerated(0.25) benign(0) TCGA-55-7994-01 2 160711433 160711433 G A LY75-CD302 Missense_Mutation p.P801S 0.32 deleterious(0) probably_damaging(0.986) TCGA-55-7994-01 2 162274318 162274318 G A TBR1 Missense_Mutation p.G275D 0.28 deleterious(0) probably_damaging(0.99) TCGA-55-7994-01 2 163253255 163253255 C G KCNH7 Missense_Mutation p.A870P 0.32 tolerated(0.14) benign(0.004) TCGA-55-7994-01 2 167322303 167322303 A G SCN7A Missense_Mutation p.Y287H 0.12 tolerated(0.33) benign(0.015) TCGA-55-7994-01 2 168100129 168100129 G T XIRP2 Missense_Mutation p.V743F 0.19 probably_damaging(1) TCGA-55-7994-01 2 168101644 168101644 A T XIRP2 Missense_Mutation p.I1248F 0.44 probably_damaging(0.994) TCGA-55-7994-01 2 168104896 168104896 G A XIRP2 Missense_Mutation p.E2332K 0.16 possibly_damaging(0.828) TCGA-55-7994-01 2 169825929 169825929 C A ABCB11 Missense_Mutation p.G648C 0.43 deleterious(0) probably_damaging(1) TCGA-55-7994-01 2 170101382 170101382 C A LRP2 Missense_Mutation p.W1084L 0.18 probably_damaging(1) TCGA-55-7994-01 2 170550878 170550878 C A CCDC173 5'UTR 0.20 TCGA-55-7994-01 2 171092630 171092630 C G MYO3B Missense_Mutation p.L245V 0.18 deleterious(0) probably_damaging(0.994) TCGA-55-7994-01 2 171400485 171400485 C A MYO3B Silent p.A1240A 0.42 TCGA-55-7994-01 2 175624295 175624295 C T CHRNA1 Missense_Mutation p.S37N 0.20 tolerated(0.17) benign(0.004) TCGA-55-7994-01 2 176946939 176946939 G T EVX2 Silent p.A222A 0.54 TCGA-55-7994-01 2 176988902 176988902 G T HOXD9 Nonstop_Mutation p.*353Lext*56 0.35 TCGA-55-7994-01 2 178301781 178301781 A T AGPS Silent p.P212P 0.28 TCGA-55-7994-01 2 178936929 178936929 T A PDE11A Missense_Mutation p.N79I 0.34 tolerated(0.17) benign(0) TCGA-55-7994-01 2 179408637 179408637 G C TTN Nonsense_Mutation p.Y32078* 0.40 TCGA-55-7994-01 2 179416711 179416711 C A TTN Nonsense_Mutation p.G30306* 0.35 TCGA-55-7994-01 2 179438817 179438817 T G TTN Silent p.P24014P 0.42 TCGA-55-7994-01 2 179441817 179441817 G T TTN Missense_Mutation p.T23082N 0.19 TCGA-55-7994-01 2 179444913 179444913 G A TTN Silent p.S22367S 0.38 TCGA-55-7994-01 2 179448470 179448470 C T TTN Silent p.Q21813Q 0.22 TCGA-55-7994-01 2 17946222 17946222 A T GEN1 Missense_Mutation p.E136V 0.37 deleterious(0) probably_damaging(1) TCGA-55-7994-01 2 179476514 179476514 G C TTN Missense_Mutation p.T16841R 0.17 TCGA-55-7994-01 2 179500856 179500856 C A TTN Missense_Mutation p.K13814N 0.30 TCGA-55-7994-01 2 179575888 179575888 T A TTN Missense_Mutation p.N9359Y 0.34 TCGA-55-7994-01 2 179582285 179582285 C A TTN Missense_Mutation p.G8439V 0.33 TCGA-55-7994-01 2 179588045 179588045 G T TTN Missense_Mutation p.A7230D 0.07 TCGA-55-7994-01 2 179594225 179594225 A C TTN Missense_Mutation p.C6220G 0.18 TCGA-55-7994-01 2 179595716 179595716 T C TTN Silent p.E5892E 0.16 TCGA-55-7994-01 2 179596306 179596306 G A TTN Silent p.P5729P 0.25 TCGA-55-7994-01 2 179613368 179613368 C A TTN Intron 0.34 TCGA-55-7994-01 2 179634582 179634582 T C TTN Missense_Mutation p.N2909S 0.25 TCGA-55-7994-01 2 179640877 179640877 T A TTN Missense_Mutation p.Y1905F 0.42 TCGA-55-7994-01 2 179733891 179733891 C G CCDC141 Missense_Mutation p.E783Q 0.28 tolerated(0.14) benign(0.384) TCGA-55-7994-01 2 182760755 182760755 A - SSFA2 Splice_Site p.X86_splice 0.14 TCGA-55-7994-01 2 182780574 182780574 G T SSFA2 Missense_Mutation p.R736M 0.25 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 2 185801901 185801901 G A ZNF804A Missense_Mutation p.S593N 0.40 tolerated(0.19) benign(0.002) TCGA-55-7994-01 2 187627072 187627072 C G FAM171B Missense_Mutation p.P668R 0.31 deleterious(0) probably_damaging(0.995) TCGA-55-7994-01 2 187627519 187627519 G T FAM171B Missense_Mutation p.R817L 0.14 deleterious(0) probably_damaging(0.909) TCGA-55-7994-01 2 187709484 187709484 C A ZSWIM2 Missense_Mutation p.W81C 0.11 deleterious(0) probably_damaging(0.941) TCGA-55-7994-01 2 188228138 188228138 C A CALCRL Missense_Mutation p.V198L 0.22 deleterious(0.04) benign(0.049) TCGA-55-7994-01 2 189866262 189866262 G A COL3A1 Missense_Mutation p.G780S 0.15 unknown(0) TCGA-55-7994-01 2 189931223 189931223 C A COL5A2 Missense_Mutation p.G486W 0.40 probably_damaging(0.999) TCGA-55-7994-01 2 189944757 189944757 C A COL5A2 Nonsense_Mutation p.G303* 0.21 TCGA-55-7994-01 2 191537847 191537847 A G NAB1 Missense_Mutation p.D325G 0.41 tolerated(0.35) benign(0.001) TCGA-55-7994-01 2 197708787 197708787 A T PGAP1 Missense_Mutation p.S784T 0.20 tolerated(0.29) benign(0.118) TCGA-55-7994-01 2 198281636 198281636 C G SF3B1 Splice_Site p.X166_splice 0.18 TCGA-55-7994-01 2 1983000 1983000 C A MYT1L Splice_Site p.X30_splice 0.09 TCGA-55-7994-01 2 201994742 201994742 G T CFLAR Missense_Mutation p.V52F 0.18 tolerated(0.71) benign(0.002) TCGA-55-7994-01 2 208986600 208986600 C A CRYGD Missense_Mutation p.D108Y 0.23 deleterious(0) probably_damaging(0.996) TCGA-55-7994-01 2 209309497 209309497 C A PTH2R Missense_Mutation p.F246L 0.37 deleterious(0.02) possibly_damaging(0.534) TCGA-55-7994-01 2 210518021 210518021 C T MAP2 Nonsense_Mutation p.R43* 0.10 TCGA-55-7994-01 2 210559241 210559241 G C MAP2 Missense_Mutation p.E783Q 0.41 deleterious(0.03) benign(0.391) TCGA-55-7994-01 2 210560409 210560409 A - MAP2 Frame_Shift_Del p.I1173Yfs*12 0.23 TCGA-55-7994-01 2 211053748 211053748 G C ACADL Missense_Mutation p.I410M 0.05 deleterious(0) probably_damaging(0.996) TCGA-55-7994-01 2 21235158 21235158 G A APOB Nonsense_Mutation p.Q1528* 0.34 TCGA-55-7994-01 2 215646105 215646105 T A BARD1 Missense_Mutation p.T165S 0.40 tolerated(0.11) probably_damaging(0.936) TCGA-55-7994-01 2 217724336 217724336 C A TNP1 3'UTR 0.37 TCGA-55-7994-01 2 219146817 219146817 C G TMBIM1 Silent p.L16L 0.14 TCGA-55-7994-01 2 219294009 219294010 - CAT VIL1 In_Frame_Ins p.G190_M191insI 0.14 TCGA-55-7994-01 2 219603604 219603604 G T TTLL4 Missense_Mutation p.G402V 0.38 deleterious(0) benign(0.235) TCGA-55-7994-01 2 220164859 220164859 G C PTPRN Silent p.V428V 0.38 TCGA-55-7994-01 2 220290760 220290760 C A DES 3'UTR 0.38 TCGA-55-7994-01 2 223513513 223513513 A C FARSB Silent p.T20T 0.09 TCGA-55-7994-01 2 225657746 225657746 C T DOCK10 Silent p.S1752S 0.31 TCGA-55-7994-01 2 225695318 225695318 G T DOCK10 Missense_Mutation p.F992L 0.19 deleterious(0.03) probably_damaging(0.989) TCGA-55-7994-01 2 225738796 225738796 T A DOCK10 Nonsense_Mutation p.K392* 0.53 TCGA-55-7994-01 2 228104898 228104898 C A COL4A3 Missense_Mutation p.Q62K 0.32 probably_damaging(0.982) TCGA-55-7994-01 2 228881291 228881291 G T SPHKAP Missense_Mutation p.P1427T 0.43 deleterious(0) probably_damaging(1) TCGA-55-7994-01 2 230456479 230456479 C A DNER Missense_Mutation p.Q134H 0.38 tolerated(0.23) benign(0.015) TCGA-55-7994-01 2 230633332 230633332 C A TRIP12 Nonsense_Mutation p.G1928* 0.36 TCGA-55-7994-01 2 231155274 231155274 A G SP140 Missense_Mutation p.Q607R 0.34 tolerated(0.06) benign(0.006) TCGA-55-7994-01 2 231406733 231406733 C A SP100 Missense_Mutation p.H844N 0.18 tolerated(0.05) benign(0.216) TCGA-55-7994-01 2 233709131 233709131 C G GIGYF2 Missense_Mutation p.T1072S 0.26 unknown(0) TCGA-55-7994-01 2 233899040 233899040 C A NEU2 Missense_Mutation p.P139H 0.39 deleterious(0) possibly_damaging(0.634) TCGA-55-7994-01 2 234359615 234359615 C G DGKD Missense_Mutation p.L696V 0.07 tolerated(0.5) benign(0.001) TCGA-55-7994-01 2 234763123 234763123 C G HJURP Missense_Mutation p.M8I 0.18 deleterious(0.01) benign(0.003) TCGA-55-7994-01 2 238243382 238243382 G T COL6A3 Missense_Mutation p.T3039K 0.31 unknown(0) TCGA-55-7994-01 2 238277615 238277615 G T COL6A3 Silent p.A1497A 0.25 TCGA-55-7994-01 2 238277618 238277618 C A COL6A3 Missense_Mutation p.Q1496H 0.48 probably_damaging(0.961) TCGA-55-7994-01 2 239976508 239976508 C T HDAC4 Missense_Mutation p.V1004I 0.35 tolerated(0.44) benign(0.014) TCGA-55-7994-01 2 241713676 241713676 C A KIF1A Missense_Mutation p.G321C 0.33 deleterious(0) probably_damaging(1) TCGA-55-7994-01 2 241725900 241725900 C A KIF1A Missense_Mutation p.V154F 0.31 deleterious(0) probably_damaging(1) TCGA-55-7994-01 2 242343281 242343281 G C FARP2 Missense_Mutation p.W74C 0.39 tolerated(1) benign(0.217) TCGA-55-7994-01 2 242757738 242757738 C T NEU4 Silent p.A286A 0.41 TCGA-55-7994-01 2 242814932 242814932 A T CXXC11 Missense_Mutation p.N409Y 0.08 deleterious(0.03) benign(0.102) TCGA-55-7994-01 2 26679340 26679340 A T DRC1 Missense_Mutation p.E726D 0.16 deleterious(0) possibly_damaging(0.766) TCGA-55-7994-01 2 26781373 26781373 C A OTOF Missense_Mutation p.V23L 0.18 tolerated(0.2) benign(0.077) TCGA-55-7994-01 2 26800411 26800411 C G C2orf70 Missense_Mutation p.Q126E 0.30 tolerated(0.07) benign(0.055) TCGA-55-7994-01 2 27355151 27355151 C A PREB Missense_Mutation p.L291F 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-55-7994-01 2 27360547 27360547 G T C2orf53 Silent p.V217V 0.17 TCGA-55-7994-01 2 27373191 27373191 G T TCF23 Missense_Mutation p.W141C 0.42 tolerated(0.07) possibly_damaging(0.786) TCGA-55-7994-01 2 29296112 29296112 C A C2orf71 Missense_Mutation p.G339V 0.10 tolerated(0.08) possibly_damaging(0.848) TCGA-55-7994-01 2 29358412 29358412 A T CLIP4 Splice_Site p.X177_splice 0.18 TCGA-55-7994-01 2 29416646 29416646 C T ALK Missense_Mutation p.R1436H 0.23 tolerated(0.16) benign(0.001) TCGA-55-7994-01 2 29432714 29432715 GG T ALK Frame_Shift_Del p.T1258Nfs*104 0.09 TCGA-55-7994-01 2 29451788 29451788 C T ALK Missense_Mutation p.G926E 0.38 deleterious(0) probably_damaging(1) TCGA-55-7994-01 2 31147628 31147628 C A GALNT14 Nonsense_Mutation p.E410* 0.12 TCGA-55-7994-01 2 31467293 31467294 - T EHD3 Frame_Shift_Ins p.G129Wfs*15 0.26 TCGA-55-7994-01 2 31483541 31483541 A G EHD3 Missense_Mutation p.Q223R 0.15 tolerated(0.12) benign(0.035) TCGA-55-7994-01 2 31489134 31489134 C - EHD3 Frame_Shift_Del p.Q392Sfs*5 0.15 TCGA-55-7994-01 2 31611154 31611154 C T XDH Missense_Mutation p.G168E 0.16 tolerated(0.29) benign(0.285) TCGA-55-7994-01 2 31758810 31758810 C A AL133247.2 Intron 0.16 TCGA-55-7994-01 2 33820593 33820593 C A FAM98A Silent p.V55V 0.13 TCGA-55-7994-01 2 37293031 37293031 A T HEATR5B Missense_Mutation p.S400R 0.23 deleterious(0.01) benign(0.077) TCGA-55-7994-01 2 37293036 37293036 T A HEATR5B Missense_Mutation p.T399S 0.25 tolerated(0.95) benign(0.001) TCGA-55-7994-01 2 38301813 38301814 - G CYP1B1 Frame_Shift_Ins p.L240Pfs*87 0.29 TCGA-55-7994-01 2 39250136 39250136 G A SOS1 Missense_Mutation p.P478L 0.21 tolerated(0.07) benign(0.39) TCGA-55-7994-01 2 39492365 39492365 C A MAP4K3 Missense_Mutation p.M705I 0.35 deleterious(0.01) probably_damaging(0.985) TCGA-55-7994-01 2 42588300 42588300 A G COX7A2L Translation_Start_Site p.M1? 0.17 deleterious(0) benign(0.031) TCGA-55-7994-01 2 44051162 44051162 A G ABCG5 Missense_Mutation p.L405P 0.17 deleterious(0.02) probably_damaging(0.932) TCGA-55-7994-01 2 44052025 44052025 T C ABCG5 Intron 0.47 TCGA-55-7994-01 2 44078814 44078814 C G ABCG8 Silent p.P138P 0.20 TCGA-55-7994-01 2 44571697 44571697 T C PREPL Missense_Mutation p.Q124R 0.17 deleterious(0.01) possibly_damaging(0.811) TCGA-55-7994-01 2 46739161 46739161 C A ATP6V1E2 3'UTR 0.25 TCGA-55-7994-01 2 46739162 46739162 C A ATP6V1E2 3'UTR 0.23 TCGA-55-7994-01 2 48713850 48713850 G T PPP1R21 Missense_Mutation p.D467Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 2 48809496 48809496 C T STON1-GTF2A1L Missense_Mutation p.P575L 0.21 deleterious(0) probably_damaging(1) TCGA-55-7994-01 2 48906570 48906570 G T STON1-GTF2A1L Missense_Mutation p.A1180S 0.14 deleterious(0) possibly_damaging(0.863) TCGA-55-7994-01 2 48906659 48906659 A C STON1-GTF2A1L 3'UTR 0.42 TCGA-55-7994-01 2 50280718 50280718 G T NRXN1 Silent p.L1313L 0.36 TCGA-55-7994-01 2 54482200 54482200 G T TSPYL6 Missense_Mutation p.D363E 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-55-7994-01 2 54858612 54858612 G T SPTBN1 Missense_Mutation p.R1143L 0.23 deleterious(0.02) probably_damaging(0.996) TCGA-55-7994-01 2 54880793 54880793 G T SPTBN1 Silent p.A1875A 0.40 TCGA-55-7994-01 2 55436803 55436803 C T CLHC1 Missense_Mutation p.D222N 0.12 tolerated(0.12) benign(0.216) TCGA-55-7994-01 2 61505560 61505560 C A USP34 Missense_Mutation p.D1759Y 0.33 deleterious(0) possibly_damaging(0.534) TCGA-55-7994-01 2 62449732 62449732 G A B3GNT2 Missense_Mutation p.R126H 0.19 deleterious(0) probably_damaging(0.932) TCGA-55-7994-01 2 64683515 64683515 C G LGALSL Silent p.L97L 0.11 TCGA-55-7994-01 2 669610 669610 C A TMEM18 Missense_Mutation p.K131N 0.10 deleterious(0.01) unknown(0) TCGA-55-7994-01 2 68544407 68544407 A C CNRIP1 Missense_Mutation p.L71R 0.15 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 2 68872913 68872913 G A PROKR1 5'UTR 0.50 TCGA-55-7994-01 2 68882465 68882465 G T PROKR1 Silent p.V313V 0.46 TCGA-55-7994-01 2 7001340 7001340 C T CMPK2 Missense_Mutation p.A323T 0.22 tolerated(1) benign(0.008) TCGA-55-7994-01 2 70188289 70188289 C A ASPRV1 Missense_Mutation p.A178S 0.55 tolerated(0.23) benign(0.027) TCGA-55-7994-01 2 70314904 70314904 T G PCBP1 Missense_Mutation p.L10R 0.20 deleterious(0) probably_damaging(0.996) TCGA-55-7994-01 2 71627288 71627288 C G ZNF638 Missense_Mutation p.N878K 0.16 tolerated(0.27) benign(0.008) TCGA-55-7994-01 2 73145381 73145381 C T EMX1 Missense_Mutation p.H134Y 0.12 tolerated(0.07) possibly_damaging(0.447) TCGA-55-7994-01 2 74042569 74042569 C A C2orf78 Missense_Mutation p.Q407K 0.17 tolerated(0.9) benign(0.311) TCGA-55-7994-01 2 74782300 74782300 C T DOK1 Missense_Mutation p.A27V 0.10 tolerated(0.16) possibly_damaging(0.724) TCGA-55-7994-01 2 75280801 75280801 T A TACR1 Silent p.T222T 0.46 TCGA-55-7994-01 2 79314746 79314746 G T REG1B 5'UTR 0.21 TCGA-55-7994-01 2 79363119 79363119 G - REG1P RNA 0.41 TCGA-55-7994-01 2 79363196 79363196 G T REG1P RNA 0.59 TCGA-55-7994-01 2 86327196 86327196 A G POLR1A Silent p.D59D 0.24 TCGA-55-7994-01 2 88405967 88405967 G C SMYD1 Missense_Mutation p.E369Q 0.28 tolerated(0.13) benign(0.145) TCGA-55-7994-01 2 89292000 89292000 G T IGKV1-8 Missense_Mutation p.F91L 0.18 deleterious(0) possibly_damaging(0.689) TCGA-55-7994-01 2 89399448 89399448 G C IGKV1-16 Missense_Mutation p.S85R 0.18 deleterious(0.05) benign(0.246) TCGA-55-7994-01 2 89513005 89513005 C A IGKV1-27 Missense_Mutation p.S85I 0.17 deleterious(0.02) possibly_damaging(0.486) TCGA-55-7994-01 2 90212080 90212080 C A IGKV3D-11 Missense_Mutation p.Q58K 0.53 deleterious(0.03) benign(0.043) TCGA-55-7994-01 2 90260145 90260145 G T IGKV1D-8 Missense_Mutation p.R83M 0.48 deleterious(0.01) possibly_damaging(0.579) TCGA-55-7994-01 2 96944045 96944045 T A SNRNP200 Missense_Mutation p.E1847V 0.22 deleterious(0) probably_damaging(0.94) TCGA-55-7994-01 2 98418391 98418391 C G TMEM131 Missense_Mutation p.L895F 0.12 tolerated(0.3) benign(0.005) TCGA-55-7994-01 3 100020967 100020967 G T TBC1D23 Missense_Mutation p.Q383H 0.43 deleterious(0) possibly_damaging(0.497) TCGA-55-7994-01 3 100617648 100617648 G C ABI3BP Missense_Mutation p.P147R 0.25 deleterious(0) possibly_damaging(0.804) TCGA-55-7994-01 3 102196304 102196304 C G ZPLD1 Missense_Mutation p.P380A 0.37 tolerated(0.53) benign(0.002) TCGA-55-7994-01 3 107096665 107096665 A T CCDC54 Missense_Mutation p.Q77H 0.43 deleterious(0) probably_damaging(0.977) TCGA-55-7994-01 3 107096908 107096908 G - CCDC54 Frame_Shift_Del p.E159Rfs*21 0.24 TCGA-55-7994-01 3 107493684 107493684 A G BBX Silent p.P678P 0.45 TCGA-55-7994-01 3 108703575 108703575 G A MORC1 Missense_Mutation p.P771L 0.15 tolerated(0.46) benign(0.009) TCGA-55-7994-01 3 11059603 11059603 G T SLC6A1 Missense_Mutation p.G105C 0.67 deleterious(0) probably_damaging(1) TCGA-55-7994-01 3 11076341 11076341 A T SLC6A1 Missense_Mutation p.Y551F 0.63 tolerated(0.25) probably_damaging(0.99) TCGA-55-7994-01 3 11300789 11300789 G T HRH1 Missense_Mutation p.M22I 0.62 tolerated(0.31) benign(0) TCGA-55-7994-01 3 11301701 11301701 G T HRH1 Silent p.R326R 0.66 TCGA-55-7994-01 3 113146176 113146176 T A WDR52 Missense_Mutation p.Q37H 0.45 tolerated_low_confidence(0.09) benign(0.011) TCGA-55-7994-01 3 113601675 113601675 A G GRAMD1C Missense_Mutation p.D179G 0.41 tolerated(0.09) benign(0.006) TCGA-55-7994-01 3 113858349 113858349 G T DRD3 Missense_Mutation p.Q241K 0.26 tolerated(1) benign(0.003) TCGA-55-7994-01 3 114026868 114026868 G T TIGIT Missense_Mutation p.G209W 0.31 deleterious(0.01) possibly_damaging(0.849) TCGA-55-7994-01 3 115395235 115395235 G T GAP43 Missense_Mutation p.G172C 0.41 deleterious(0.01) probably_damaging(0.928) TCGA-55-7994-01 3 119812255 119812255 G C GSK3B Silent p.S9S 0.38 TCGA-55-7994-01 3 120320183 120320183 A T NDUFB4 Intron 0.35 TCGA-55-7994-01 3 121134767 121134767 A G STXBP5L Missense_Mutation p.K1084E 0.28 deleterious(0) possibly_damaging(0.496) TCGA-55-7994-01 3 121251867 121251867 C G POLQ Silent p.V310V 0.36 TCGA-55-7994-01 3 121305477 121305477 G T ARGFX 3'UTR 0.55 TCGA-55-7994-01 3 121340501 121340501 C A FBXO40 Silent p.S75S 0.23 TCGA-55-7994-01 3 121340502 121340502 A T FBXO40 Missense_Mutation p.M76L 0.23 tolerated(0.18) benign(0.014) TCGA-55-7994-01 3 121415438 121415438 T C GOLGB1 Missense_Mutation p.Q1311R 0.43 benign(0.36) TCGA-55-7994-01 3 122269540 122269540 G C PARP9 Missense_Mutation p.T441R 0.16 tolerated(0.47) benign(0.091) TCGA-55-7994-01 3 122631808 122631808 G C SEMA5B Missense_Mutation p.C923W 0.33 deleterious(0) probably_damaging(1) TCGA-55-7994-01 3 125701152 125701152 T C ROPN1B Missense_Mutation p.S146P 0.37 deleterious(0) possibly_damaging(0.742) TCGA-55-7994-01 3 126180704 126180704 C A ZXDC Missense_Mutation p.V601L 0.23 deleterious(0.03) benign(0.011) TCGA-55-7994-01 3 126180822 126180822 C G ZXDC Silent p.G561G 0.28 TCGA-55-7994-01 3 126185041 126185041 G A ZXDC Silent p.H466H 0.12 TCGA-55-7994-01 3 133099589 133099589 C A TMEM108 Missense_Mutation p.P345H 0.24 deleterious(0) probably_damaging(0.912) TCGA-55-7994-01 3 133169150 133169150 G A BFSP2 Missense_Mutation p.V245M 0.26 deleterious(0.03) possibly_damaging(0.734) TCGA-55-7994-01 3 133647318 133647318 C A C3orf36 Silent p.G110G 0.33 TCGA-55-7994-01 3 13546226 13546226 C G HDAC11 3'UTR 0.66 TCGA-55-7994-01 3 13663316 13663316 C A FBLN2 Silent p.R733R 0.66 TCGA-55-7994-01 3 137981353 137981353 C - NME9 3'UTR 0.25 TCGA-55-7994-01 3 140185568 140185568 G C CLSTN2 Missense_Mutation p.D447H 0.21 deleterious(0.04) benign(0.081) TCGA-55-7994-01 3 140397297 140397297 T A TRIM42 Missense_Mutation p.C76S 0.25 deleterious(0) probably_damaging(0.959) TCGA-55-7994-01 3 145841974 145841974 C T PLOD2 Missense_Mutation p.G51E 0.34 deleterious(0) probably_damaging(0.996) TCGA-55-7994-01 3 147120541 147120541 A T ZIC4 Missense_Mutation p.L65H 0.30 deleterious_low_confidence(0.05) probably_damaging(0.984) TCGA-55-7994-01 3 151085961 151085961 C T MED12L Missense_Mutation p.P1123S 0.20 tolerated(0.15) benign(0.209) TCGA-55-7994-01 3 154834469 154834469 A T MME Missense_Mutation p.R152S 0.48 deleterious(0.01) possibly_damaging(0.688) TCGA-55-7994-01 3 154834707 154834707 G T MME Missense_Mutation p.G196W 0.29 deleterious(0) probably_damaging(1) TCGA-55-7994-01 3 154886377 154886377 A G MME Missense_Mutation p.Y626C 0.25 deleterious(0.04) probably_damaging(1) TCGA-55-7994-01 3 155199374 155199374 G C PLCH1 Missense_Mutation p.P1489A 0.08 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-55-7994-01 3 15719757 15719757 G A ANKRD28 Missense_Mutation p.P859L 0.57 deleterious(0.04) probably_damaging(0.968) TCGA-55-7994-01 3 157823836 157823836 G T SHOX2 5'UTR 0.20 TCGA-55-7994-01 3 158537524 158537524 C A MFSD1 Missense_Mutation p.Q296K 0.32 tolerated(0.22) benign(0.01) TCGA-55-7994-01 3 160138648 160138648 A G SMC4 Missense_Mutation p.R660G 0.24 tolerated(0.09) benign(0.219) TCGA-55-7994-01 3 164709164 164709164 C A SI Missense_Mutation p.E1695D 0.33 tolerated(0.08) benign(0.01) TCGA-55-7994-01 3 164906700 164906700 G T SLITRK3 Nonsense_Mutation p.S640* 0.30 TCGA-55-7994-01 3 164908132 164908132 G T SLITRK3 Missense_Mutation p.R163S 0.27 tolerated(0.39) probably_damaging(0.998) TCGA-55-7994-01 3 167000074 167000074 T A ZBBX Missense_Mutation p.T736S 0.18 tolerated(0.18) benign(0.159) TCGA-55-7994-01 3 170016829 170016829 G T PRKCI Missense_Mutation p.G545V 0.24 tolerated(0.07) possibly_damaging(0.634) TCGA-55-7994-01 3 170016830 170016830 G T PRKCI Silent p.G545G 0.25 TCGA-55-7994-01 3 170141062 170141062 G T CLDN11 Missense_Mutation p.G113V 0.14 tolerated(0.24) probably_damaging(0.918) TCGA-55-7994-01 3 171320838 171320838 G T PLD1 3'UTR 0.40 TCGA-55-7994-01 3 173996839 173996839 G T NLGN1 Missense_Mutation p.A350S 0.30 tolerated(0.27) benign(0.157) TCGA-55-7994-01 3 179754382 179754382 G A PEX5L Silent p.Y2Y 0.24 TCGA-55-7994-01 3 179754462 179754462 G T PEX5L 5'UTR 0.41 TCGA-55-7994-01 3 182988576 182988576 G T B3GNT5 Missense_Mutation p.Q330H 0.40 tolerated(0.59) benign(0) TCGA-55-7994-01 3 183910685 183910685 G T ABCF3 Splice_Site p.X584_splice 0.25 TCGA-55-7994-01 3 184062306 184062306 G C FAM131A Missense_Mutation p.G217R 0.38 tolerated(0.06) probably_damaging(0.998) TCGA-55-7994-01 3 184090702 184090702 A T THPO Missense_Mutation p.W221R 0.39 tolerated_low_confidence(1) benign(0) TCGA-55-7994-01 3 184295686 184295686 G T EPHB3 Missense_Mutation p.G547V 0.34 tolerated(0.16) benign(0.028) TCGA-55-7994-01 3 185191546 185191546 G A MAP3K13 Silent p.Q809Q 0.40 TCGA-55-7994-01 3 186338623 186338623 C A AHSG Silent p.P336P 0.40 TCGA-55-7994-01 3 190126221 190126221 G A CLDN16 Nonsense_Mutation p.W237* 0.35 TCGA-55-7994-01 3 190147466 190147466 G T TMEM207 Missense_Mutation p.P120H 0.43 deleterious(0.01) possibly_damaging(0.591) TCGA-55-7994-01 3 194061765 194061765 C A CPN2 3'UTR 0.22 TCGA-55-7994-01 3 194063172 194063172 T A CPN2 Missense_Mutation p.Q87L 0.39 tolerated(0.19) benign(0.001) TCGA-55-7994-01 3 195515689 195515689 G C MUC4 Missense_Mutation p.T921S 0.11 unknown(0) TCGA-55-7994-01 3 196388192 196388192 C T NRROS Silent p.L560L 0.36 TCGA-55-7994-01 3 33614643 33614643 G A CLASP2 Silent p.L895L 0.66 TCGA-55-7994-01 3 38103700 38103700 T A DLEC1 Nonsense_Mutation p.C238* 0.64 TCGA-55-7994-01 3 38603953 38603953 G T SCN5A Missense_Mutation p.R1306S 0.52 deleterious(0) probably_damaging(0.998) TCGA-55-7994-01 3 38763859 38763859 T A SCN10A Missense_Mutation p.S1133C 0.06 deleterious(0.02) possibly_damaging(0.778) TCGA-55-7994-01 3 39227743 39227743 G C XIRP1 Missense_Mutation p.A1065G 0.47 deleterious(0) probably_damaging(0.996) TCGA-55-7994-01 3 43122561 43122563 GGT - POMGNT2 In_Frame_Del p.T121del 0.59 TCGA-55-7994-01 3 45153607 45153607 C A CDCP1 Missense_Mutation p.G208V 0.63 deleterious(0) probably_damaging(1) TCGA-55-7994-01 3 47951344 47951344 C A MAP4 Intron 0.63 TCGA-55-7994-01 3 48587628 48587628 C T PFKFB4 Missense_Mutation p.G46D 0.42 possibly_damaging(0.753) TCGA-55-7994-01 3 48638155 48638155 C T UQCRC1 Missense_Mutation p.R362Q 0.16 tolerated(0.3) benign(0.294) TCGA-55-7994-01 3 49569634 49569634 C T DAG1 Missense_Mutation p.L564F 0.67 tolerated(0.11) possibly_damaging(0.629) TCGA-55-7994-01 3 51517757 51517757 C T VPRBP Missense_Mutation p.D30N 0.63 deleterious(0.04) benign(0.142) TCGA-55-7994-01 3 51971706 51971706 C A RRP9 Silent p.A109A 0.56 TCGA-55-7994-01 3 5229961 5229961 C T AC026202.1 Missense_Mutation p.G8R 0.84 probably_damaging(0.98) TCGA-55-7994-01 3 52512267 52512267 A G NISCH Missense_Mutation p.N381S 0.12 deleterious(0.02) benign(0.082) TCGA-55-7994-01 3 52852080 52852080 C A ITIH4 Missense_Mutation p.D762Y 0.62 deleterious(0.01) possibly_damaging(0.803) TCGA-55-7994-01 3 58094197 58094197 G T FLNB Missense_Mutation p.G652W 0.48 deleterious(0) probably_damaging(1) TCGA-55-7994-01 3 64148737 64148737 C A PRICKLE2 Silent p.L71L 0.60 TCGA-55-7994-01 3 64666991 64666991 G T ADAMTS9 Missense_Mutation p.Q189K 0.57 tolerated(0.07) benign(0.004) TCGA-55-7994-01 3 69271058 69271058 C A FRMD4B Nonsense_Mutation p.E228* 0.42 TCGA-55-7994-01 3 71821832 71821832 G T PROK2 3'UTR 0.57 TCGA-55-7994-01 3 71821833 71821833 G T PROK2 3'UTR 0.55 TCGA-55-7994-01 3 73004409 73004409 G A GXYLT2 Missense_Mutation p.R254H 0.14 deleterious(0) probably_damaging(0.995) TCGA-55-7994-01 3 93643109 93643109 C A PROS1 Splice_Site p.X79_splice 0.32 TCGA-55-7994-01 3 97806733 97806733 C G OR5AC2 Silent p.A239A 0.28 TCGA-55-7994-01 3 97868594 97868594 G C OR5H14 Missense_Mutation p.R122P 0.20 deleterious(0) probably_damaging(0.993) TCGA-55-7994-01 4 104066825 104066825 T A CENPE Missense_Mutation p.E1476V 0.17 benign(0.064) TCGA-55-7994-01 4 10567717 10567717 C A CLNK Missense_Mutation p.D70Y 0.23 deleterious(0) possibly_damaging(0.646) TCGA-55-7994-01 4 107846966 107846966 G T DKK2 Silent p.R121R 0.14 TCGA-55-7994-01 4 114276281 114276281 A T ANK2 Silent p.V2169V 0.36 TCGA-55-7994-01 4 114276441 114276441 C A ANK2 Missense_Mutation p.P2223T 0.31 probably_damaging(1) TCGA-55-7994-01 4 114277412 114277412 C A ANK2 Silent p.V2546V 0.19 TCGA-55-7994-01 4 120528153 120528153 C T PDE5A Missense_Mutation p.R151K 0.44 tolerated(0.07) benign(0.05) TCGA-55-7994-01 4 122824058 122824058 C A TRPC3 Missense_Mutation p.R804S 0.13 tolerated(0.58) benign(0.002) TCGA-55-7994-01 4 134072687 134072687 C G PCDH10 Missense_Mutation p.S464R 0.29 tolerated(0.46) benign(0.142) TCGA-55-7994-01 4 134073168 134073168 G A PCDH10 Missense_Mutation p.E625K 0.19 deleterious(0) possibly_damaging(0.759) TCGA-55-7994-01 4 140810417 140810417 C A MAML3 Intron 0.15 TCGA-55-7994-01 4 141302138 141302138 A T SCOC Silent p.A120A 0.17 TCGA-55-7994-01 4 144390295 144390295 G T GAB1 Missense_Mutation p.G710W 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-55-7994-01 4 146770520 146770520 C G ZNF827 Missense_Mutation p.Q725H 0.52 deleterious(0.01) probably_damaging(0.986) TCGA-55-7994-01 4 146806880 146806880 C G ZNF827 Missense_Mutation p.S566T 0.45 deleterious(0.01) possibly_damaging(0.857) TCGA-55-7994-01 4 146807096 146807096 C A ZNF827 Missense_Mutation p.G494V 0.19 deleterious(0.01) benign(0.027) TCGA-55-7994-01 4 147795999 147795999 C A TTC29 Missense_Mutation p.R223L 0.15 tolerated(0.11) benign(0.004) TCGA-55-7994-01 4 152086802 152086802 T A SH3D19 Silent p.A247A 0.16 TCGA-55-7994-01 4 155156611 155156611 C A DCHS2 Missense_Mutation p.V2610L 0.30 tolerated(0.27) benign(0.03) TCGA-55-7994-01 4 155236942 155236942 C A DCHS2 Missense_Mutation p.G1285W 0.28 deleterious(0) probably_damaging(1) TCGA-55-7994-01 4 155249299 155249299 C A DCHS2 Missense_Mutation p.A867S 0.17 deleterious(0) probably_damaging(0.986) TCGA-55-7994-01 4 155256229 155256229 C G DCHS2 Missense_Mutation p.S336T 0.21 tolerated(0.18) possibly_damaging(0.501) TCGA-55-7994-01 4 155505463 155505463 C - FGA Frame_Shift_Del p.G805Efs*54 0.20 TCGA-55-7994-01 4 155719165 155719165 C G RBM46 Missense_Mutation p.I118M 0.38 tolerated(0.11) probably_damaging(1) TCGA-55-7994-01 4 156638339 156638339 T C GUCY1A3 Missense_Mutation p.V534A 0.23 deleterious(0) probably_damaging(0.998) TCGA-55-7994-01 4 158074127 158074127 G T GLRB Nonsense_Mutation p.G388* 0.33 TCGA-55-7994-01 4 158282693 158282693 C T GRIA2 Silent p.T765T 0.23 TCGA-55-7994-01 4 159443138 159443138 G T RXFP1 Missense_Mutation p.G4C 0.42 deleterious_low_confidence(0.01) benign(0.285) TCGA-55-7994-01 4 159443139 159443139 G T RXFP1 Missense_Mutation p.G4V 0.42 deleterious_low_confidence(0.02) benign(0.001) TCGA-55-7994-01 4 159568169 159568169 A C RXFP1 Silent p.G524G 0.21 TCGA-55-7994-01 4 160267991 160267991 G T RAPGEF2 Missense_Mutation p.V1024L 0.20 tolerated(0.08) benign(0.271) TCGA-55-7994-01 4 162376270 162376270 A G FSTL5 Missense_Mutation p.L576P 0.35 deleterious(0.02) benign(0.174) TCGA-55-7994-01 4 166929185 166929185 G T TLL1 Missense_Mutation p.R301M 0.32 deleterious(0.01) probably_damaging(0.958) TCGA-55-7994-01 4 169108673 169108673 C A ANXA10 3'UTR 0.21 TCGA-55-7994-01 4 169433393 169433393 C A PALLD Missense_Mutation p.N246K 0.45 tolerated(0.93) benign(0) TCGA-55-7994-01 4 170618398 170618398 C A CLCN3 Missense_Mutation p.A359D 0.12 deleterious(0) probably_damaging(0.997) TCGA-55-7994-01 4 170927070 170927070 C A MFAP3L 5'UTR 0.35 TCGA-55-7994-01 4 175158495 175158495 C A FBXO8 3'UTR 0.14 TCGA-55-7994-01 4 175564856 175564856 C A GLRA3 3'UTR 0.20 TCGA-55-7994-01 4 185646144 185646144 G A CENPU Missense_Mutation p.S96F 0.15 tolerated(0.07) benign(0.003) TCGA-55-7994-01 4 185689427 185689427 C G ACSL1 Intron 0.44 TCGA-55-7994-01 4 186423463 186423463 C G PDLIM3 Silent p.L360L 0.41 TCGA-55-7994-01 4 187207644 187207644 G C F11 Missense_Mutation p.W519S 0.40 deleterious(0) probably_damaging(1) TCGA-55-7994-01 4 187539244 187539244 C A FAT1 Missense_Mutation p.R2832S 0.22 benign(0.297) TCGA-55-7994-01 4 187549392 187549392 C T FAT1 Missense_Mutation p.A1576T 0.34 probably_damaging(0.999) TCGA-55-7994-01 4 20525761 20525761 A G SLIT2 Missense_Mutation p.R467G 0.24 deleterious(0) probably_damaging(0.991) TCGA-55-7994-01 4 20543120 20543120 G T SLIT2 Missense_Mutation p.W674L 0.18 deleterious(0) probably_damaging(0.996) TCGA-55-7994-01 4 20570606 20570606 C T SLIT2 Missense_Mutation p.L1023F 0.24 tolerated(0.28) possibly_damaging(0.529) TCGA-55-7994-01 4 20620524 20620524 G T SLIT2 Silent p.P1494P 0.12 TCGA-55-7994-01 4 21950308 21950308 G T KCNIP4 5'UTR 0.21 TCGA-55-7994-01 4 22737818 22737818 C A GBA3 Missense_Mutation p.F91L 0.36 tolerated(0.64) possibly_damaging(0.55) TCGA-55-7994-01 4 23816192 23816192 T A PPARGC1A Missense_Mutation p.N305I 0.15 tolerated(0.06) probably_damaging(0.959) TCGA-55-7994-01 4 24531262 24531263 - T DHX15 Frame_Shift_Ins p.N745Efs*23 0.14 TCGA-55-7994-01 4 25750127 25750127 T A SEL1L3 Missense_Mutation p.S1107C 0.27 deleterious_low_confidence(0.01) benign(0.401) TCGA-55-7994-01 4 27010420 27010420 G T STIM2 Nonsense_Mutation p.E437* 0.26 TCGA-55-7994-01 4 30725906 30725906 G C PCDH7 Silent p.V954V 0.46 TCGA-55-7994-01 4 38945156 38945156 G T FAM114A1 Missense_Mutation p.S557I 0.37 deleterious(0) possibly_damaging(0.563) TCGA-55-7994-01 4 41750410 41750410 T A PHOX2B Missense_Mutation p.H73L 0.17 deleterious(0) benign(0.44) TCGA-55-7994-01 4 42122120 42122120 T A BEND4 Silent p.T446T 0.16 TCGA-55-7994-01 4 42583650 42583650 G T ATP8A1 Silent p.T274T 0.38 TCGA-55-7994-01 4 46043188 46043188 C A GABRG1 Missense_Mutation p.Q405H 0.33 deleterious(0.05) benign(0.116) TCGA-55-7994-01 4 46099355 46099355 G T GABRG1 Missense_Mutation p.A39E 0.40 tolerated(0.34) benign(0.06) TCGA-55-7994-01 4 46252604 46252604 G T GABRA2 Silent p.S359S 0.38 TCGA-55-7994-01 4 46979085 46979085 G T GABRA4 Missense_Mutation p.F190L 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-55-7994-01 4 4861965 4861965 G T MSX1 Silent p.R113R 0.45 TCGA-55-7994-01 4 48996702 48996702 C A CWH43 Missense_Mutation p.P193H 0.17 deleterious(0.01) benign(0.067) TCGA-55-7994-01 4 501299 501299 G C PIGG Missense_Mutation p.G226R 0.38 deleterious(0) probably_damaging(1) TCGA-55-7994-01 4 52942955 52942955 A T SPATA18 Missense_Mutation p.S257C 0.29 deleterious(0) possibly_damaging(0.823) TCGA-55-7994-01 4 54880043 54880043 C A CHIC2 Silent p.L136L 0.13 TCGA-55-7994-01 4 55946212 55946212 C A KDR Nonsense_Mutation p.E1323* 0.37 TCGA-55-7994-01 4 56448285 56448285 C A PDCL2 Missense_Mutation p.M42I 0.16 tolerated(0.41) benign(0.048) TCGA-55-7994-01 4 56496606 56496606 C A NMU Missense_Mutation p.G45V 0.15 tolerated(0.33) benign(0.108) TCGA-55-7994-01 4 59446 59446 C A ZNF595 Missense_Mutation p.L43M 0.07 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-7994-01 4 619666 619666 G T PDE6B Missense_Mutation p.C84F 0.33 deleterious(0.03) possibly_damaging(0.74) TCGA-55-7994-01 4 62598793 62598793 G T LPHN3 Missense_Mutation p.S239I 0.10 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 4 6580155 6580155 T A MAN2B2 Missense_Mutation p.F107L 0.17 deleterious(0.04) benign(0.35) TCGA-55-7994-01 4 68547298 68547298 C T UBA6 Missense_Mutation p.V81I 0.17 tolerated(0.84) benign(0.014) TCGA-55-7994-01 4 68688201 68688201 G T TMPRSS11D Missense_Mutation p.P371T 0.50 deleterious(0) probably_damaging(0.982) TCGA-55-7994-01 4 69093706 69093706 C A TMPRSS11B Missense_Mutation p.G392C 0.35 deleterious(0) probably_damaging(0.964) TCGA-55-7994-01 4 70455213 70455213 G T UGT2A1 Missense_Mutation p.H653Q 0.33 deleterious(0) probably_damaging(0.998) TCGA-55-7994-01 4 71232604 71232604 C G SMR3A Missense_Mutation p.P100A 0.46 deleterious_low_confidence(0) unknown(0) TCGA-55-7994-01 4 71508841 71508841 T A ENAM Silent p.T566T 0.40 TCGA-55-7994-01 4 71588305 71588305 G T RUFY3 Silent p.T5T 0.23 TCGA-55-7994-01 4 73186498 73186498 G C ADAMTS3 Missense_Mutation p.N345K 0.31 tolerated(0.21) benign(0.008) TCGA-55-7994-01 4 74007483 74007483 G - ANKRD17 Frame_Shift_Del p.T770Pfs*39 0.29 TCGA-55-7994-01 4 74013045 74013045 C T ANKRD17 Missense_Mutation p.A558T 0.27 probably_damaging(1) TCGA-55-7994-01 4 74275095 74275095 G T ALB Missense_Mutation p.R169I 0.46 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 4 79240021 79240021 G T FRAS1 Missense_Mutation p.C673F 0.40 probably_damaging(0.99) TCGA-55-7994-01 4 79462002 79462002 G C FRAS1 Missense_Mutation p.L3921F 0.10 possibly_damaging(0.866) TCGA-55-7994-01 4 82031766 82031766 C T PRKG2 Splice_Site p.X593_splice 0.09 TCGA-55-7994-01 4 85654540 85654540 C T WDFY3 Missense_Mutation p.V2406M 0.11 tolerated(0.17) benign(0.057) TCGA-55-7994-01 4 88766903 88766903 C T MEPE Missense_Mutation p.H295Y 0.30 deleterious(0.01) benign(0.116) TCGA-55-7994-01 4 89383390 89383390 G C HERC5 Missense_Mutation p.V191L 0.41 tolerated(0.1) benign(0.371) TCGA-55-7994-01 4 90169636 90169636 A G GPRIN3 Silent p.S542S 0.24 TCGA-55-7994-01 4 90872765 90872765 C T MMRN1 Missense_Mutation p.S1043L 0.10 tolerated(0.32) possibly_damaging(0.848) TCGA-55-7994-01 4 90874184 90874184 T A MMRN1 Missense_Mutation p.V1101E 0.50 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 4 96123951 96123951 G A UNC5C Silent p.P689P 0.47 TCGA-55-7994-01 5 108219132 108219132 A T FER Missense_Mutation p.Q320L 0.49 tolerated(0.25) probably_damaging(0.989) TCGA-55-7994-01 5 110407676 110407676 G C TSLP Missense_Mutation p.D30H 0.54 deleterious(0) possibly_damaging(0.867) TCGA-55-7994-01 5 11199609 11199609 C A CTNND2 Silent p.V642V 0.59 TCGA-55-7994-01 5 112917375 112917375 G T YTHDC2 Nonsense_Mutation p.E1206* 0.42 TCGA-55-7994-01 5 115141129 115141129 C A CDO1 3'UTR 0.50 TCGA-55-7994-01 5 115298331 115298331 G T AQPEP Missense_Mutation p.S6I 0.41 deleterious(0.04) benign(0.348) TCGA-55-7994-01 5 118580248 118580248 G A DMXL1 Missense_Mutation p.G2946R 0.44 deleterious(0) probably_damaging(1) TCGA-55-7994-01 5 121412656 121412656 C A LOX Silent p.A224A 0.53 TCGA-55-7994-01 5 127730865 127730865 C A FBN2 Missense_Mutation p.R394L 0.50 deleterious(0.03) benign(0.022) TCGA-55-7994-01 5 127800460 127800460 G C FBN2 Missense_Mutation p.C261W 0.50 deleterious(0) probably_damaging(0.963) TCGA-55-7994-01 5 137226201 137226201 G A PKD2L2 Silent p.K21K 0.49 TCGA-55-7994-01 5 137504273 137504273 T A BRD8 Intron 0.48 TCGA-55-7994-01 5 138208768 138208768 G A LRRTM2 Silent p.P494P 0.53 TCGA-55-7994-01 5 140208045 140208045 G A PCDHA6 Silent p.V123V 0.60 TCGA-55-7994-01 5 140215589 140215589 G T PCDHA7 Missense_Mutation p.G541C 0.60 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-7994-01 5 140236091 140236091 T A PCDHA10 Missense_Mutation p.L153Q 0.65 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-55-7994-01 5 140347788 140347788 G C PCDHAC2 Missense_Mutation p.Q479H 0.62 tolerated(0.09) benign(0.315) TCGA-55-7994-01 5 140515300 140515300 T A PCDHB5 Missense_Mutation p.M95K 0.48 deleterious_low_confidence(0) benign(0.184) TCGA-55-7994-01 5 140554318 140554318 C A PCDHB7 Missense_Mutation p.D634E 0.07 deleterious_low_confidence(0.05) possibly_damaging(0.625) TCGA-55-7994-01 5 140554489 140554489 G T PCDHB7 Silent p.A691A 0.16 TCGA-55-7994-01 5 140558613 140558613 C A PCDHB8 Missense_Mutation p.T333N 0.13 deleterious_low_confidence(0.02) benign(0.027) TCGA-55-7994-01 5 140725983 140725983 C T PCDHGA3 Nonsense_Mutation p.Q795* 0.64 TCGA-55-7994-01 5 140741214 140741214 C A PCDHGB2 Nonsense_Mutation p.Y504* 0.61 TCGA-55-7994-01 5 140741481 140741481 G T PCDHGB2 Silent p.A593A 0.46 TCGA-55-7994-01 5 140744546 140744546 G T PCDHGA5 Missense_Mutation p.G217C 0.65 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-7994-01 5 140745845 140745845 G - PCDHGA5 Frame_Shift_Del p.G650Afs*26 0.41 TCGA-55-7994-01 5 140768516 140768516 G T PCDHGB4 Missense_Mutation p.M355I 0.51 deleterious(0.04) benign(0.1) TCGA-55-7994-01 5 140799836 140799836 A T PCDHGB7 Nonsense_Mutation p.K804* 0.53 TCGA-55-7994-01 5 141318415 141318415 A G KIAA0141 3'UTR 0.58 TCGA-55-7994-01 5 141318417 141318417 G T KIAA0141 3'UTR 0.57 TCGA-55-7994-01 5 145609462 145609462 A G RBM27 Missense_Mutation p.N193S 0.58 tolerated(0.9) benign(0.004) TCGA-55-7994-01 5 149227127 149227127 G T PPARGC1B 3'UTR 0.65 TCGA-55-7994-01 5 149437096 149437096 G T CSF1R Missense_Mutation p.T731N 0.62 tolerated(0.07) probably_damaging(0.946) TCGA-55-7994-01 5 149502662 149502662 C A PDGFRB Missense_Mutation p.R709L 0.61 tolerated(0.17) benign(0.025) TCGA-55-7994-01 5 150885495 150885495 G A FAT2 Silent p.P4227P 0.45 TCGA-55-7994-01 5 151784061 151784061 G T NMUR2 Missense_Mutation p.T205K 0.57 deleterious(0.04) possibly_damaging(0.784) TCGA-55-7994-01 5 156378585 156378585 G T TIMD4 Missense_Mutation p.P206Q 0.64 tolerated(0.2) probably_damaging(0.916) TCGA-55-7994-01 5 16682002 16682002 C T MYO10 Silent p.E1389E 0.56 TCGA-55-7994-01 5 169021409 169021409 A T SPDL1 Silent p.V231V 0.43 TCGA-55-7994-01 5 169506025 169506025 G T DOCK2 Nonsense_Mutation p.E1681* 0.50 TCGA-55-7994-01 5 169506113 169506113 C A DOCK2 Missense_Mutation p.A1710E 0.58 tolerated_low_confidence(0.58) benign(0.329) TCGA-55-7994-01 5 169672974 169672974 C A C5orf58 Missense_Mutation p.Q56K 0.44 tolerated(0.19) possibly_damaging(0.486) TCGA-55-7994-01 5 176008578 176008578 G T CDHR2 Missense_Mutation p.V685L 0.39 deleterious(0) probably_damaging(0.98) TCGA-55-7994-01 5 176638942 176638942 A T NSD1 Missense_Mutation p.E1181V 0.64 deleterious_low_confidence(0.01) possibly_damaging(0.572) TCGA-55-7994-01 5 177632992 177632992 A G HNRNPAB Missense_Mutation p.D120G 0.62 deleterious(0) possibly_damaging(0.888) TCGA-55-7994-01 5 178194197 178194197 A T AACSP1 RNA 0.25 TCGA-55-7994-01 5 195088 195088 C G LRRC14B Missense_Mutation p.R389G 0.50 tolerated(0.33) benign(0.007) TCGA-55-7994-01 5 21817074 21817074 C G CDH12 Missense_Mutation p.G328R 0.67 deleterious(0) probably_damaging(1) TCGA-55-7994-01 5 24535300 24535300 C A CDH10 Missense_Mutation p.Q245H 0.60 tolerated(0.19) probably_damaging(0.976) TCGA-55-7994-01 5 31305506 31305506 G T CDH6 Missense_Mutation p.D409Y 0.57 deleterious(0) possibly_damaging(0.891) TCGA-55-7994-01 5 33588773 33588773 G T ADAMTS12 Silent p.P932P 0.61 TCGA-55-7994-01 5 34823528 34823528 C T RAI14 Silent p.V530V 0.08 TCGA-55-7994-01 5 3599371 3599371 G A IRX1 Silent p.G103G 0.18 TCGA-55-7994-01 5 41054867 41054867 A T MROH2B Splice_Site p.X369_splice 0.64 TCGA-55-7994-01 5 42718896 42718896 G T GHR Missense_Mutation p.K429N 0.08 tolerated(0.09) benign(0.34) TCGA-55-7994-01 5 43293009 43293009 C A HMGCS1 Missense_Mutation p.G417V 0.30 tolerated(0.37) benign(0.006) TCGA-55-7994-01 5 45267338 45267338 T A HCN1 Nonsense_Mutation p.K546* 0.55 TCGA-55-7994-01 5 45695856 45695856 A T HCN1 Missense_Mutation p.F114I 0.11 deleterious(0) probably_damaging(0.966) TCGA-55-7994-01 5 5461306 5461306 A C KIAA0947 Missense_Mutation p.D620A 0.44 tolerated(0.83) benign(0.009) TCGA-55-7994-01 5 54649010 54649010 G T SKIV2L2 Silent p.T482T 0.42 TCGA-55-7994-01 5 55086461 55086461 A G DDX4 Silent p.R410R 0.57 TCGA-55-7994-01 5 59064181 59064181 G A PDE4D Intron 0.18 TCGA-55-7994-01 5 71519590 71519590 C A MRPS27 Missense_Mutation p.G309W 0.47 deleterious(0.01) probably_damaging(0.928) TCGA-55-7994-01 5 75888672 75888672 A G IQGAP2 Missense_Mutation p.I277V 0.58 tolerated(0.76) benign(0.005) TCGA-55-7994-01 5 75913853 75913853 G T F2RL2 Missense_Mutation p.P227T 0.50 deleterious(0) probably_damaging(1) TCGA-55-7994-01 5 7892890 7892890 A G MTRR Missense_Mutation p.E501G 0.23 deleterious(0) probably_damaging(1) TCGA-55-7994-01 5 79032431 79032431 G C CMYA5 Missense_Mutation p.V2615L 0.43 benign(0.002) TCGA-55-7994-01 5 80640015 80640015 C T ACOT12 Missense_Mutation p.R315Q 0.38 tolerated(0.34) benign(0.006) TCGA-55-7994-01 5 82815327 82815327 T C VCAN Missense_Mutation p.I401T 0.57 tolerated(0.14) possibly_damaging(0.529) TCGA-55-7994-01 5 82876222 82876222 G T VCAN Missense_Mutation p.W3387L 0.69 deleterious(0) probably_damaging(0.989) TCGA-55-7994-01 5 83433089 83433089 C A EDIL3 Missense_Mutation p.G147C 0.45 deleterious(0.04) probably_damaging(1) TCGA-55-7994-01 5 878500 878500 C A BRD9 Missense_Mutation p.G414V 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 5 878501 878501 C A BRD9 Nonsense_Mutation p.G414* 0.13 TCGA-55-7994-01 5 89949346 89949346 C G GPR98 Missense_Mutation p.R1319G 0.46 possibly_damaging(0.726) TCGA-55-7994-01 5 95242315 95242315 G A ELL2 Missense_Mutation p.A218V 0.49 deleterious(0.01) benign(0.143) TCGA-55-7994-01 5 96315661 96315661 C T LNPEP Missense_Mutation p.T280I 0.58 deleterious(0.04) benign(0.091) TCGA-55-7994-01 6 102074333 102074333 T C GRIK2 Missense_Mutation p.I121T 0.50 deleterious(0.03) probably_damaging(0.995) TCGA-55-7994-01 6 107361247 107361247 A G C6orf203 Missense_Mutation p.K100E 0.51 tolerated(0.08) benign(0.022) TCGA-55-7994-01 6 108843500 108843500 G T LACE1 Missense_Mutation p.D440Y 0.77 deleterious(0) benign(0.221) TCGA-55-7994-01 6 112575384 112575384 G A LAMA4 5'UTR 0.47 TCGA-55-7994-01 6 114379341 114379341 A G HS3ST5 Missense_Mutation p.C41R 0.22 deleterious_low_confidence(0.01) probably_damaging(0.962) TCGA-55-7994-01 6 117113761 117113761 A G GPRC6A Silent p.Y775Y 0.52 TCGA-55-7994-01 6 117121861 117121861 G C GPRC6A Silent p.L478L 0.46 TCGA-55-7994-01 6 117248310 117248310 G T RFX6 Missense_Mutation p.G669V 0.49 tolerated_low_confidence(0.14) benign(0.282) TCGA-55-7994-01 6 117825069 117825069 G - DCBLD1 Frame_Shift_Del p.G85Efs*31 0.39 TCGA-55-7994-01 6 118635280 118635280 C A SLC35F1 Silent p.P364P 0.61 TCGA-55-7994-01 6 124676489 124676489 C A NKAIN2 Nonsense_Mutation p.S90* 0.46 TCGA-55-7994-01 6 127440410 127440410 T A RSPO3 Missense_Mutation p.S25T 0.52 tolerated(0.55) benign(0.003) TCGA-55-7994-01 6 129498915 129498915 C A LAMA2 Silent p.A457A 0.54 TCGA-55-7994-01 6 129635808 129635808 G T LAMA2 Silent p.V1140V 0.38 TCGA-55-7994-01 6 129920408 129920408 C A ARHGAP18 Missense_Mutation p.A556S 0.45 tolerated(0.22) benign(0.041) TCGA-55-7994-01 6 132194180 132194181 - G ENPP1 Frame_Shift_Ins p.Q519Rfs*20 0.34 TCGA-55-7994-01 6 136596677 136596677 A G BCLAF1 Silent p.H615H 0.11 TCGA-55-7994-01 6 1390746 1390746 G A FOXF2 Silent p.S188S 0.21 TCGA-55-7994-01 6 146720441 146720441 C T GRM1 Missense_Mutation p.P756S 0.45 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 6 152712596 152712596 T C SYNE1 Missense_Mutation p.N2607S 0.36 benign(0.006) TCGA-55-7994-01 6 158450044 158450044 G T SYNJ2 Silent p.G157G 0.42 TCGA-55-7994-01 6 158487485 158487485 G A SYNJ2 Missense_Mutation p.R512K 0.44 tolerated(0.5) benign(0.005) TCGA-55-7994-01 6 159006335 159006335 G T TMEM181 Splice_Site p.X224_splice 0.45 TCGA-55-7994-01 6 159653222 159653222 C A FNDC1 Missense_Mutation p.Q560K 0.35 deleterious_low_confidence(0.02) unknown(0) TCGA-55-7994-01 6 159653318 159653318 C A FNDC1 Missense_Mutation p.P592T 0.50 tolerated_low_confidence(0.13) unknown(0) TCGA-55-7994-01 6 159655434 159655434 C A FNDC1 Missense_Mutation p.S1297Y 0.20 deleterious_low_confidence(0) unknown(0) TCGA-55-7994-01 6 161587281 161587281 C A AGPAT4 Missense_Mutation p.G116V 0.48 deleterious(0) possibly_damaging(0.903) TCGA-55-7994-01 6 163991744 163991744 C T QKI 3'UTR 0.48 TCGA-55-7994-01 6 165827012 165827012 C A PDE10A Missense_Mutation p.A419S 0.61 deleterious(0.02) probably_damaging(1) TCGA-55-7994-01 6 165827126 165827126 G T PDE10A Missense_Mutation p.P381T 0.63 deleterious(0) probably_damaging(1) TCGA-55-7994-01 6 166845888 166845888 C G RPS6KA2 Splice_Site p.X482_splice 0.58 TCGA-55-7994-01 6 169626277 169626277 G C THBS2 Missense_Mutation p.Q846E 0.41 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 6 17292451 17292451 A T RBM24 3'UTR 0.73 TCGA-55-7994-01 6 25813433 25813433 C A SLC17A1 Missense_Mutation p.G209C 0.43 deleterious(0) probably_damaging(0.992) TCGA-55-7994-01 6 26124150 26124150 G T HIST1H2BC 5'Flank 0.37 TCGA-55-7994-01 6 26184318 26184318 G T HIST1H2BE Missense_Mutation p.V99L 0.17 tolerated_low_confidence(0.05) benign(0.041) TCGA-55-7994-01 6 26197163 26197163 C G HIST1H3D Missense_Mutation p.E106Q 0.16 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-55-7994-01 6 26197475 26197475 C A HIST1H3D Missense_Mutation p.A2S 0.12 deleterious_low_confidence(0) benign(0.063) TCGA-55-7994-01 6 26235027 26235027 G T HIST1H1D Silent p.I45I 0.19 TCGA-55-7994-01 6 26377273 26377273 T C BTN3A2 3'UTR 0.14 TCGA-55-7994-01 6 26385531 26385531 G T BTN2A2 Missense_Mutation p.R128L 0.16 tolerated(0.79) benign(0.254) TCGA-55-7994-01 6 26423463 26423463 G T BTN2A3P RNA 0.44 TCGA-55-7994-01 6 27419027 27419027 A G ZNF184 3'UTR 0.35 TCGA-55-7994-01 6 29640954 29640954 G A ZFP57 Nonsense_Mutation p.Q312* 0.07 TCGA-55-7994-01 6 30030076 30030076 G - ZNRD1 Frame_Shift_Del p.Q109Kfs*80 0.13 TCGA-55-7994-01 6 30551459 30551459 C - ABCF1 Frame_Shift_Del p.R331Afs*5 0.40 TCGA-55-7994-01 6 30570323 30570323 T A PPP1R10 Silent p.G701G 0.50 TCGA-55-7994-01 6 31107664 31107664 G T PSORS1C1 Silent p.S138S 0.36 TCGA-55-7994-01 6 31602958 31602958 G A PRRC2A Missense_Mutation p.R1737Q 0.06 unknown(0) TCGA-55-7994-01 6 31677949 31677949 C A LY6G6F Missense_Mutation p.P265T 0.16 tolerated(0.11) benign(0.005) TCGA-55-7994-01 6 31778528 31778528 C A HSPA1L Missense_Mutation p.A408S 0.19 deleterious_low_confidence(0) benign(0.339) TCGA-55-7994-01 6 31779206 31779206 C A HSPA1L Missense_Mutation p.A182S 0.54 deleterious_low_confidence(0.02) possibly_damaging(0.657) TCGA-55-7994-01 6 31850745 31850745 C T EHMT2 Silent p.P1012P 0.07 TCGA-55-7994-01 6 31855581 31855581 C A EHMT2 Missense_Mutation p.A635S 0.18 deleterious(0.04) benign(0.279) TCGA-55-7994-01 6 32097297 32097297 C A FKBPL Missense_Mutation p.M87I 0.54 tolerated_low_confidence(0.35) benign(0) TCGA-55-7994-01 6 32172111 32172111 G T NOTCH4 Missense_Mutation p.S974Y 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-55-7994-01 6 32188036 32188036 C T NOTCH4 Missense_Mutation p.M395I 0.50 tolerated(0.06) benign(0.32) TCGA-55-7994-01 6 32629937 32629937 T C HLA-DQB1 Silent p.P156P 0.59 TCGA-55-7994-01 6 33132108 33132108 G T COL11A2 Missense_Mutation p.A1583D 0.40 unknown(0) TCGA-55-7994-01 6 33136733 33136733 C A COL11A2 Missense_Mutation p.R1198L 0.34 unknown(0) TCGA-55-7994-01 6 33374368 33374368 G T KIFC1 Splice_Site p.X610_splice 0.45 TCGA-55-7994-01 6 33638231 33638231 G T ITPR3 Silent p.L773L 0.27 TCGA-55-7994-01 6 33638232 33638232 C T ITPR3 Missense_Mutation p.R774C 0.28 deleterious(0) probably_damaging(1) TCGA-55-7994-01 6 35705826 35705826 G A ARMC12 Silent p.R89R 0.15 TCGA-55-7994-01 6 35923030 35923030 G T SLC26A8 Missense_Mutation p.P711T 0.16 tolerated(0.09) benign(0.271) TCGA-55-7994-01 6 36193074 36193074 G A BRPF3 Missense_Mutation p.R1071H 0.18 tolerated(0.12) benign(0) TCGA-55-7994-01 6 36922668 36922668 G T PI16 Silent p.R44R 0.39 TCGA-55-7994-01 6 37618147 37618147 G T MDGA1 Silent p.A449A 0.26 TCGA-55-7994-01 6 37619860 37619860 G T MDGA1 Nonsense_Mutation p.Y413* 0.12 TCGA-55-7994-01 6 38312814 38312814 C G BTBD9 Missense_Mutation p.A404P 0.33 deleterious(0.02) possibly_damaging(0.887) TCGA-55-7994-01 6 39563928 39563928 C T KIF6 Missense_Mutation p.D250N 0.40 deleterious(0) probably_damaging(1) TCGA-55-7994-01 6 4116043 4116043 G T ECI2 3'UTR 0.19 TCGA-55-7994-01 6 41621101 41621101 C T MDFI Silent p.L177L 0.29 TCGA-55-7994-01 6 41738849 41738849 G A FRS3 Silent p.P329P 0.38 TCGA-55-7994-01 6 41877046 41877046 C A MED20 Silent p.T128T 0.26 TCGA-55-7994-01 6 43395680 43395680 G T ABCC10 Intron 0.17 TCGA-55-7994-01 6 43970870 43970870 G A C6orf223 3'UTR 0.30 TCGA-55-7994-01 6 44116019 44116019 G T TMEM63B Nonsense_Mutation p.E340* 0.34 TCGA-55-7994-01 6 46766354 46766354 G T MEP1A Missense_Mutation p.D53Y 0.44 deleterious(0) possibly_damaging(0.635) TCGA-55-7994-01 6 46967891 46967891 T A GPR110 3'UTR 0.46 TCGA-55-7994-01 6 49803149 49803149 G T CRISP1 Silent p.P210P 0.24 TCGA-55-7994-01 6 49819743 49819743 C T CRISP1 Missense_Mutation p.V56I 0.23 tolerated(0.42) benign(0.003) TCGA-55-7994-01 6 54013880 54013880 G T MLIP Missense_Mutation p.K213N 0.32 deleterious(0) probably_damaging(0.95) TCGA-55-7994-01 6 55922568 55922568 G T COL21A1 Missense_Mutation p.H921N 0.32 tolerated(0.46) unknown(0) TCGA-55-7994-01 6 56324944 56324944 G A DST Nonsense_Mutation p.R5080* 0.44 TCGA-55-7994-01 6 56351960 56351960 C A DST Missense_Mutation p.D4374Y 0.18 possibly_damaging(0.9) TCGA-55-7994-01 6 56417155 56417155 G A DST Nonsense_Mutation p.R2856* 0.30 TCGA-55-7994-01 6 56480558 56480558 C A DST Intron 0.33 TCGA-55-7994-01 6 57472405 57472405 G T PRIM2 3'UTR 0.08 TCGA-55-7994-01 6 69949085 69949085 C A BAI3 Silent p.L927L 0.38 TCGA-55-7994-01 6 71603883 71603883 A T B3GAT2 Silent p.V228V 0.09 TCGA-55-7994-01 6 73952169 73952169 C T KHDC1 Missense_Mutation p.M97I 0.23 deleterious(0.03) benign(0.003) TCGA-55-7994-01 6 75862093 75862093 C A COL12A1 Missense_Mutation p.R1224L 0.20 benign(0.09) TCGA-55-7994-01 6 7862668 7862668 C A BMP6 Silent p.R381R 0.55 TCGA-55-7994-01 6 80631426 80631426 G T ELOVL4 Missense_Mutation p.Q153K 0.15 deleterious(0) probably_damaging(0.998) TCGA-55-7994-01 6 87725312 87725312 G C HTR1E Missense_Mutation p.R87P 0.49 tolerated(0.06) benign(0.196) TCGA-55-7994-01 6 87994541 87994541 G T GJB7 Silent p.V30V 0.50 TCGA-55-7994-01 6 94066534 94066534 C A EPHA7 Missense_Mutation p.A409S 0.52 tolerated(0.13) possibly_damaging(0.713) TCGA-55-7994-01 6 94120578 94120578 C T EPHA7 Missense_Mutation p.G158D 0.54 tolerated(0.42) probably_damaging(0.997) TCGA-55-7994-01 6 97052653 97052653 C T FHL5 Missense_Mutation p.H63Y 0.51 deleterious(0) probably_damaging(1) TCGA-55-7994-01 6 99282917 99282917 C A POU3F2 Missense_Mutation p.S56R 0.14 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-55-7994-01 7 100202835 100202835 C T PCOLCE Silent p.D195D 0.37 TCGA-55-7994-01 7 100282480 100282480 G A GIGYF1 Missense_Mutation p.S443F 0.54 deleterious(0) unknown(0) TCGA-55-7994-01 7 100549929 100549929 C T MUC3A Silent p.V170V 0.29 TCGA-55-7994-01 7 100680571 100680571 C A MUC17 Silent p.T1958T 0.29 TCGA-55-7994-01 7 100699540 100699540 C A MUC17 Missense_Mutation p.P4477T 0.19 unknown(0) TCGA-55-7994-01 7 100699541 100699541 C A MUC17 Missense_Mutation p.P4477H 0.18 unknown(0) TCGA-55-7994-01 7 100841914 100841914 C A MOGAT3 Missense_Mutation p.M162I 0.22 deleterious(0) possibly_damaging(0.457) TCGA-55-7994-01 7 100861407 100861407 G T ZNHIT1 5'UTR 0.36 TCGA-55-7994-01 7 106508406 106508406 C A PIK3CG Missense_Mutation p.Q134K 0.43 tolerated(0.51) benign(0.002) TCGA-55-7994-01 7 107053054 107053054 G C COG5 Missense_Mutation p.L219V 0.23 deleterious(0.01) benign(0.422) TCGA-55-7994-01 7 107807498 107807498 C T NRCAM Missense_Mutation p.E1112K 0.35 tolerated(0.29) benign(0.032) TCGA-55-7994-01 7 111512348 111512348 C A DOCK4 Missense_Mutation p.G635W 0.36 deleterious(0) probably_damaging(0.996) TCGA-55-7994-01 7 111580204 111580204 G C DOCK4 Missense_Mutation p.T313R 0.42 tolerated(0.24) benign(0.002) TCGA-55-7994-01 7 113518458 113518458 T A PPP1R3A Missense_Mutation p.I897F 0.31 tolerated(0.37) benign(0.005) TCGA-55-7994-01 7 113519425 113519425 G T PPP1R3A Silent p.T574T 0.31 TCGA-55-7994-01 7 120782111 120782111 G C CPED1 Silent p.L657L 0.48 TCGA-55-7994-01 7 121676738 121676738 T G PTPRZ1 Splice_Site p.X1789_splice 0.09 TCGA-55-7994-01 7 121693973 121693973 C A PTPRZ1 Missense_Mutation p.Q2088K 0.21 tolerated(0.1) benign(0.043) TCGA-55-7994-01 7 122091530 122091530 C A CADPS2 Splice_Site p.X729_splice 0.36 TCGA-55-7994-01 7 123267195 123267195 G T ASB15 Silent p.G243G 0.47 TCGA-55-7994-01 7 12680115 12680115 C A SCIN Missense_Mutation p.N518K 0.19 deleterious(0) probably_damaging(1) TCGA-55-7994-01 7 127251108 127251108 C A PAX4 3'UTR 0.25 TCGA-55-7994-01 7 128138164 128138164 G T METTL2B Missense_Mutation p.R295L 0.44 deleterious(0.01) probably_damaging(0.92) TCGA-55-7994-01 7 128475589 128475589 G T FLNC Missense_Mutation p.G188C 0.36 deleterious(0) probably_damaging(1) TCGA-55-7994-01 7 128478828 128478828 G T FLNC Missense_Mutation p.R461L 0.53 tolerated(0.05) benign(0.023) TCGA-55-7994-01 7 128492926 128492926 G T FLNC Missense_Mutation p.V2017L 0.44 deleterious(0) probably_damaging(0.994) TCGA-55-7994-01 7 128845065 128845065 T A SMO Missense_Mutation p.F187I 0.16 deleterious(0) possibly_damaging(0.78) TCGA-55-7994-01 7 130020354 130020354 G T CPA1 5'UTR 0.33 TCGA-55-7994-01 7 130295852 130295852 T A COPG2 Missense_Mutation p.S237C 0.47 tolerated(0.22) benign(0.02) TCGA-55-7994-01 7 130418064 130418064 C A KLF14 Missense_Mutation p.R266L 0.33 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 7 131888125 131888125 C A PLXNA4 Silent p.V784V 0.37 TCGA-55-7994-01 7 134852536 134852536 T A C7orf49 Missense_Mutation p.Y54F 0.39 deleterious(0) probably_damaging(0.992) TCGA-55-7994-01 7 135047514 135047514 A T CNOT4 3'UTR 0.15 TCGA-55-7994-01 7 136848996 136848996 C A hsa-mir-490 Intron 0.39 TCGA-55-7994-01 7 137028323 137028323 G T PTN 5'UTR 0.27 TCGA-55-7994-01 7 137263021 137263021 C A DGKI Missense_Mutation p.A565S 0.34 deleterious(0.01) probably_damaging(0.958) TCGA-55-7994-01 7 138347843 138347843 C A SVOPL Silent p.L107L 0.25 TCGA-55-7994-01 7 138601522 138601522 T C KIAA1549 Silent p.T950T 0.47 TCGA-55-7994-01 7 140221874 140221874 C A DENND2A Missense_Mutation p.V898L 0.48 tolerated(0.99) benign(0.232) TCGA-55-7994-01 7 141537799 141537799 C T PRSS37 Silent p.Q97Q 0.13 TCGA-55-7994-01 7 141724853 141724853 G A MGAM Missense_Mutation p.G296R 0.15 tolerated(0.51) possibly_damaging(0.459) TCGA-55-7994-01 7 141955444 141955444 G T PRSS58 Nonsense_Mutation p.Y30* 0.32 TCGA-55-7994-01 7 142008813 142008813 C T TRBV3-1 Missense_Mutation p.H96Y 0.45 tolerated(0.1) benign(0.411) TCGA-55-7994-01 7 142032493 142032493 G T TRBV7-1 Missense_Mutation p.D105Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 7 142099915 142099915 C T TRBV7-8 Nonsense_Mutation p.W8* 0.32 TCGA-55-7994-01 7 142131571 142131571 G T TRBV5-6 Missense_Mutation p.P62T 0.30 deleterious(0.03) probably_damaging(0.977) TCGA-55-7994-01 7 142168673 142168673 C A TRBV5-4 Missense_Mutation p.G17V 0.30 deleterious(0.01) probably_damaging(1) TCGA-55-7994-01 7 142460282 142460282 C A PRSS1 Missense_Mutation p.A152D 0.21 tolerated(0.62) benign(0.001) TCGA-55-7994-01 7 142564021 142564021 G C EPHB6 Missense_Mutation p.S470T 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-55-7994-01 7 142750055 142750055 C T OR6V1 Silent p.L206L 0.26 TCGA-55-7994-01 7 142832330 142832330 C A PIP Missense_Mutation p.R47S 0.38 tolerated(0.62) benign(0.003) TCGA-55-7994-01 7 142836767 142836767 G T PIP 3'UTR 0.35 TCGA-55-7994-01 7 143018480 143018480 G T CLCN1 Missense_Mutation p.Q152H 0.43 tolerated(0.08) benign(0.002) TCGA-55-7994-01 7 143039136 143039136 C T CLCN1 Missense_Mutation p.A566V 0.43 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 7 143095772 143095772 C - EPHA1 Frame_Shift_Del p.E420Kfs*34 0.33 TCGA-55-7994-01 7 143175617 143175617 G T TAS2R41 Missense_Mutation p.G218W 0.26 tolerated(0.15) possibly_damaging(0.907) TCGA-55-7994-01 7 143632915 143632915 C T OR2F2 Missense_Mutation p.A197V 0.51 tolerated(1) benign(0.002) TCGA-55-7994-01 7 143748172 143748172 G C OR2A5 Missense_Mutation p.L226F 0.30 deleterious(0) probably_damaging(0.971) TCGA-55-7994-01 7 149191375 149191375 C - ZNF746 Frame_Shift_Del p.E82Rfs*43 0.15 TCGA-55-7994-01 7 149519663 149519663 C T SSPO RNA 0.44 TCGA-55-7994-01 7 150093920 150093920 C T ZNF775 Silent p.S117S 0.29 TCGA-55-7994-01 7 150325015 150325015 C A GIMAP6 Missense_Mutation p.W224L 0.31 deleterious(0.05) probably_damaging(0.99) TCGA-55-7994-01 7 150389753 150389753 C A GIMAP2 Missense_Mutation p.Q127K 0.14 tolerated(0.38) benign(0.016) TCGA-55-7994-01 7 150649743 150649743 T C KCNH2 Missense_Mutation p.T443A 0.47 tolerated(0.65) benign(0.004) TCGA-55-7994-01 7 150656680 150656680 G T KCNH2 Missense_Mutation p.P151H 0.12 tolerated(0.06) benign(0.001) TCGA-55-7994-01 7 154598805 154598805 T G DPP6 Missense_Mutation p.F550C 0.46 deleterious(0.03) probably_damaging(1) TCGA-55-7994-01 7 15599897 15599897 C A AGMO Splice_Site p.X43_splice 0.26 TCGA-55-7994-01 7 156799291 156799291 C T MNX1 Missense_Mutation p.R245H 0.20 deleterious(0) probably_damaging(1) TCGA-55-7994-01 7 18669105 18669105 G T HDAC9 Splice_Site p.X266_splice 0.26 TCGA-55-7994-01 7 18993771 18993771 G A HDAC9 Silent p.L980L 0.31 TCGA-55-7994-01 7 20683140 20683140 A G ABCB5 Missense_Mutation p.N188S 0.33 tolerated(0.44) benign(0.413) TCGA-55-7994-01 7 20685746 20685746 C T ABCB5 Silent p.I322I 0.11 TCGA-55-7994-01 7 24329179 24329179 G A NPY Missense_Mutation p.E84K 0.05 tolerated(0.12) benign(0.005) TCGA-55-7994-01 7 24331291 24331291 C A NPY Missense_Mutation p.D93E 0.19 tolerated(0.23) benign(0.001) TCGA-55-7994-01 7 2577814 2577814 C A BRAT1 Silent p.R785R 0.17 TCGA-55-7994-01 7 27147795 27147795 G T HOXA3 Silent p.T357T 0.19 TCGA-55-7994-01 7 27147796 27147796 G T HOXA3 Missense_Mutation p.T357N 0.22 tolerated(0.33) possibly_damaging(0.788) TCGA-55-7994-01 7 27183097 27183097 T A HOXA5 Missense_Mutation p.R44W 0.28 deleterious(0) probably_damaging(0.949) TCGA-55-7994-01 7 27186946 27186946 C A HOXA6 Missense_Mutation p.Q141H 0.34 deleterious(0) probably_damaging(0.948) TCGA-55-7994-01 7 27224354 27224354 G T HOXA11 Missense_Mutation p.P137Q 0.43 deleterious(0) probably_damaging(0.993) TCGA-55-7994-01 7 30088838 30088838 A T PLEKHA8 Splice_Site p.X147_splice 0.20 TCGA-55-7994-01 7 31013668 31013668 A T GHRHR Silent p.A222A 0.36 TCGA-55-7994-01 7 31887622 31887622 C A PDE1C Nonsense_Mutation p.E374* 0.13 TCGA-55-7994-01 7 34192757 34192757 A G BMPER Missense_Mutation p.K644E 0.03 deleterious(0.02) possibly_damaging(0.813) TCGA-55-7994-01 7 34979784 34979784 G A DPY19L1 Silent p.I542I 0.33 TCGA-55-7994-01 7 35280585 35280585 G T TBX20 Missense_Mutation p.T240K 0.36 tolerated(0.78) benign(0.18) TCGA-55-7994-01 7 35289618 35289618 G T TBX20 Missense_Mutation p.L109I 0.14 deleterious(0) probably_damaging(0.991) TCGA-55-7994-01 7 36194773 36194773 G T EEPD1 Silent p.G280G 0.45 TCGA-55-7994-01 7 36338687 36338687 G A EEPD1 Missense_Mutation p.A528T 0.12 deleterious(0.02) probably_damaging(0.988) TCGA-55-7994-01 7 37780698 37780698 C T GPR141 Missense_Mutation p.L235F 0.26 tolerated(0.38) benign(0.015) TCGA-55-7994-01 7 39125457 39125457 T C POU6F2 Intron 0.20 TCGA-55-7994-01 7 39606023 39606023 G T YAE1D1 Silent p.S2S 0.44 TCGA-55-7994-01 7 40314173 40314173 A T SUGCT Missense_Mutation p.Y220F 0.18 tolerated(0.1) possibly_damaging(0.513) TCGA-55-7994-01 7 44104604 44104604 C G PGAM2 Missense_Mutation p.R141P 0.15 deleterious(0.01) probably_damaging(0.976) TCGA-55-7994-01 7 44152432 44152432 C T AEBP1 Silent p.R831R 0.18 TCGA-55-7994-01 7 44184701 44184701 T A GCK 3'UTR 0.24 TCGA-55-7994-01 7 44282250 44282250 A G CAMK2B Missense_Mutation p.V202A 0.27 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-55-7994-01 7 44578756 44578756 C T NPC1L1 Missense_Mutation p.A414T 0.44 deleterious(0.03) probably_damaging(0.954) TCGA-55-7994-01 7 44714856 44714856 G T OGDH Missense_Mutation p.A339S 0.17 tolerated(0.19) probably_damaging(0.916) TCGA-55-7994-01 7 47842879 47842879 C G PKD1L1 Missense_Mutation p.G2631R 0.42 tolerated(0.11) possibly_damaging(0.867) TCGA-55-7994-01 7 47897210 47897210 G A PKD1L1 Missense_Mutation p.P1528L 0.49 deleterious(0) probably_damaging(0.919) TCGA-55-7994-01 7 47933487 47933487 C A PKD1L1 Missense_Mutation p.G814V 0.41 deleterious(0) possibly_damaging(0.643) TCGA-55-7994-01 7 47933488 47933488 C A PKD1L1 Missense_Mutation p.G814W 0.41 deleterious(0) probably_damaging(0.95) TCGA-55-7994-01 7 4800840 4800840 G C FOXK1 Missense_Mutation p.Q614H 0.08 deleterious(0) probably_damaging(0.971) TCGA-55-7994-01 7 4824652 4824652 C T AP5Z1 Nonsense_Mutation p.Q302* 0.29 TCGA-55-7994-01 7 48314412 48314412 G C ABCA13 Missense_Mutation p.A1717P 0.15 benign(0.069) TCGA-55-7994-01 7 48547486 48547486 G T ABCA13 Missense_Mutation p.Q4455H 0.53 probably_damaging(1) TCGA-55-7994-01 7 4917565 4917565 C A RADIL Missense_Mutation p.G69V 0.15 deleterious(0) probably_damaging(1) TCGA-55-7994-01 7 4917566 4917566 C A RADIL Missense_Mutation p.G69W 0.16 deleterious(0) probably_damaging(1) TCGA-55-7994-01 7 50683919 50683919 C A GRB10 Missense_Mutation p.K324N 0.22 deleterious(0) probably_damaging(0.913) TCGA-55-7994-01 7 55467690 55467690 G T LANCL2 Missense_Mutation p.D191Y 0.15 deleterious(0.01) probably_damaging(0.933) TCGA-55-7994-01 7 56079563 56079563 C A PSPH Splice_Site p.X191_splice 0.09 TCGA-55-7994-01 7 5942366 5942366 C A CCZ1 Missense_Mutation p.F171L 0.18 deleterious(0.01) probably_damaging(0.951) TCGA-55-7994-01 7 62752023 62752023 C G ZNF733P RNA 0.09 TCGA-55-7994-01 7 64004715 64004715 C T ZNF680 Missense_Mutation p.M42I 0.24 deleterious(0.03) probably_damaging(0.983) TCGA-55-7994-01 7 6470120 6470120 C G DAGLB Missense_Mutation p.G307A 0.11 tolerated(0.13) probably_damaging(0.999) TCGA-55-7994-01 7 6630053 6630053 C G C7orf26 Missense_Mutation p.L47V 0.18 deleterious(0.01) possibly_damaging(0.801) TCGA-55-7994-01 7 66463934 66463934 C T TYW1 Missense_Mutation p.T89I 0.21 deleterious(0.01) probably_damaging(0.983) TCGA-55-7994-01 7 70881041 70881041 C A WBSCR17 Silent p.T252T 0.25 TCGA-55-7994-01 7 72658045 72658045 A T GTF2IRD2P1 RNA 0.39 TCGA-55-7994-01 7 73011626 73011626 C T MLXIPL Missense_Mutation p.A497T 0.17 tolerated(0.86) benign(0.001) TCGA-55-7994-01 7 76019260 76019260 C A SRCRB4D 3'UTR 0.38 TCGA-55-7994-01 7 76825816 76825816 G A FGL2 Missense_Mutation p.P367L 0.29 deleterious(0.01) possibly_damaging(0.582) TCGA-55-7994-01 7 79082588 79082588 C A MAGI2 Nonsense_Mutation p.E17* 0.29 TCGA-55-7994-01 7 80427438 80427438 C A SEMA3C Missense_Mutation p.Q367H 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-55-7994-01 7 81372684 81372684 C A HGF Missense_Mutation p.A284S 0.35 tolerated(0.89) benign(0.01) TCGA-55-7994-01 7 81612629 81612629 C A CACNA2D1 Splice_Site p.X632_splice 0.22 TCGA-55-7994-01 7 82580712 82580712 G T PCLO Silent p.S3064S 0.20 TCGA-55-7994-01 7 82764123 82764123 C A PCLO Missense_Mutation p.A915S 0.45 unknown(0) TCGA-55-7994-01 7 86416074 86416074 C A GRM3 Silent p.T322T 0.30 TCGA-55-7994-01 7 87825893 87825893 C - ADAM22 3'UTR 0.58 TCGA-55-7994-01 7 87825895 87825895 G A ADAM22 3'UTR 0.58 TCGA-55-7994-01 7 88847582 88847582 T A ZNF804B Silent p.I74I 0.33 TCGA-55-7994-01 7 88964974 88964974 C A ZNF804B Missense_Mutation p.S893Y 0.26 deleterious(0.01) possibly_damaging(0.885) TCGA-55-7994-01 7 92731661 92731661 G T SAMD9 Silent p.L1250L 0.26 TCGA-55-7994-01 7 95813613 95813613 C A SLC25A13 Nonsense_Mutation p.E386* 0.32 TCGA-55-7994-01 7 97821535 97821535 G C LMTK2 Silent p.L586L 0.47 TCGA-55-7994-01 7 99169920 99169920 G T ZNF655 Silent p.S98S 0.43 TCGA-55-7994-01 7 99305458 99305460 AGG - CYP3A7 In_Frame_Del p.S464del 0.08 TCGA-55-7994-01 7 99526463 99526463 C G GJC3 Missense_Mutation p.V261L 0.41 tolerated(0.3) benign(0.024) TCGA-55-7994-01 7 99526854 99526854 G A GJC3 Silent p.S130S 0.32 TCGA-55-7994-01 7 99704526 99704526 G T AP4M1 3'UTR 0.50 TCGA-55-7994-01 7 99799047 99799047 C T GATS 3'UTR 0.86 TCGA-55-7994-01 8 100654432 100654432 G A VPS13B Missense_Mutation p.A1897T 0.08 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-55-7994-01 8 102589634 102589634 A C GRHL2 Splice_Site p.X298_splice 0.11 TCGA-55-7994-01 8 103284883 103284883 C A UBR5 Missense_Mutation p.D2283Y 0.12 deleterious(0) probably_damaging(0.986) TCGA-55-7994-01 8 10468635 10468635 C T RP1L1 Silent p.E991E 0.53 TCGA-55-7994-01 8 104897753 104897753 T C RIMS2 Missense_Mutation p.V309A 0.14 tolerated_low_confidence(0.45) benign(0.209) TCGA-55-7994-01 8 105367322 105367322 G T DCSTAMP Missense_Mutation p.R416L 0.09 deleterious(0) probably_damaging(1) TCGA-55-7994-01 8 106815248 106815248 C A ZFPM2 Missense_Mutation p.Q980K 0.48 deleterious(0.01) probably_damaging(0.977) TCGA-55-7994-01 8 107691473 107691473 G T OXR1 Nonsense_Mutation p.G87* 0.60 TCGA-55-7994-01 8 110431379 110431379 G T PKHD1L1 Missense_Mutation p.G805V 0.57 deleterious(0.01) probably_damaging(0.972) TCGA-55-7994-01 8 110454308 110454308 G T PKHD1L1 Missense_Mutation p.W1426L 0.05 deleterious(0) possibly_damaging(0.603) TCGA-55-7994-01 8 113318349 113318349 C G CSMD3 Missense_Mutation p.R2653P 0.14 tolerated(0.06) probably_damaging(0.992) TCGA-55-7994-01 8 113569060 113569060 C - CSMD3 Frame_Shift_Del p.G1389Efs*8 0.14 TCGA-55-7994-01 8 113697904 113697904 G C CSMD3 Missense_Mutation p.P738R 0.10 deleterious(0) probably_damaging(1) TCGA-55-7994-01 8 113960056 113960056 C A CSMD3 Nonsense_Mutation p.E491* 0.11 TCGA-55-7994-01 8 11606487 11606487 C A GATA4 Missense_Mutation p.P226T 0.42 deleterious(0) probably_damaging(1) TCGA-55-7994-01 8 120809951 120809951 C A TAF2 Missense_Mutation p.D310Y 0.13 tolerated(0.06) probably_damaging(0.945) TCGA-55-7994-01 8 124371525 124371525 C G ATAD2 Missense_Mutation p.E440Q 0.05 deleterious(0) probably_damaging(1) TCGA-55-7994-01 8 124383143 124383143 C A ATAD2 Nonsense_Mutation p.E243* 0.08 TCGA-55-7994-01 8 124664983 124664983 T C KLHL38 Missense_Mutation p.M62V 0.13 deleterious(0) probably_damaging(0.997) TCGA-55-7994-01 8 131130772 131130772 C T ASAP1 Missense_Mutation p.G586E 0.53 deleterious(0.02) probably_damaging(0.999) TCGA-55-7994-01 8 133883768 133883768 G T TG Silent p.G150G 0.64 TCGA-55-7994-01 8 139158249 139158249 C T FAM135B Missense_Mutation p.G1165R 0.09 deleterious(0) possibly_damaging(0.55) TCGA-55-7994-01 8 139890201 139890201 G A COL22A1 Silent p.T150T 0.36 TCGA-55-7994-01 8 140630592 140630592 C A KCNK9 Missense_Mutation p.S345I 0.59 tolerated(0.11) benign(0.393) TCGA-55-7994-01 8 142238413 142238413 C A SLC45A4 5'UTR 0.11 TCGA-55-7994-01 8 144644999 144644999 G T GSDMD Silent p.P460P 0.22 TCGA-55-7994-01 8 144992728 144992728 C A PLEC Missense_Mutation p.G3891V 0.44 probably_damaging(1) TCGA-55-7994-01 8 145058991 145058991 C A PARP10 Silent p.G393G 0.63 TCGA-55-7994-01 8 145640452 145640452 G T SLC39A4 Missense_Mutation p.A237D 0.11 tolerated(0.71) benign(0.002) TCGA-55-7994-01 8 146115728 146115728 C A ZNF250 Missense_Mutation p.A3S 0.48 tolerated(0.14) benign(0.345) TCGA-55-7994-01 8 17400986 17400986 C A SLC7A2 Missense_Mutation p.S86R 0.53 deleterious(0.01) possibly_damaging(0.88) TCGA-55-7994-01 8 19818412 19818412 G T LPL Silent p.L380L 0.33 TCGA-55-7994-01 8 22470627 22470627 C T CCAR2 Missense_Mutation p.L228F 0.09 tolerated(1) benign(0.011) TCGA-55-7994-01 8 27294637 27294637 A C PTK2B Splice_Site p.X448_splice 0.49 TCGA-55-7994-01 8 28209072 28209072 C G ZNF395 Silent p.G391G 0.36 TCGA-55-7994-01 8 29195937 29195937 C A DUSP4 Missense_Mutation p.G221C 0.60 deleterious(0.03) probably_damaging(0.989) TCGA-55-7994-01 8 30699851 30699851 T C TEX15 Missense_Mutation p.H2228R 0.53 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 8 33230146 33230146 C A FUT10 Missense_Mutation p.R463S 0.44 tolerated(0.22) benign(0.059) TCGA-55-7994-01 8 33230147 33230147 C A FUT10 Missense_Mutation p.R463M 0.44 deleterious(0.01) possibly_damaging(0.88) TCGA-55-7994-01 8 38196064 38196064 T A WHSC1L1 Missense_Mutation p.E246V 0.54 tolerated(0.06) benign(0.04) TCGA-55-7994-01 8 38840043 38840043 C A HTRA4 Missense_Mutation p.L381M 0.49 tolerated(0.07) probably_damaging(0.991) TCGA-55-7994-01 8 42852780 42852780 T C HOOK3 Silent p.D540D 0.40 TCGA-55-7994-01 8 4494864 4494864 C A CSMD1 Missense_Mutation p.R101I 0.46 possibly_damaging(0.901) TCGA-55-7994-01 8 49832790 49832790 T A SNAI2 Missense_Mutation p.K97M 0.48 tolerated(0.11) benign(0.284) TCGA-55-7994-01 8 49832848 49832848 C A SNAI2 Nonsense_Mutation p.G78* 0.52 TCGA-55-7994-01 8 51314826 51314826 G C SNTG1 Silent p.R28R 0.30 TCGA-55-7994-01 8 52232527 52232527 G T PXDNL Missense_Mutation p.P1439H 0.54 deleterious(0.04) benign(0.337) TCGA-55-7994-01 8 52336204 52336204 C T PXDNL Missense_Mutation p.G576R 0.09 deleterious(0) probably_damaging(1) TCGA-55-7994-01 8 52359646 52359647 - T PXDNL Frame_Shift_Ins p.H481Qfs*7 0.32 TCGA-55-7994-01 8 52387552 52387552 G T PXDNL Missense_Mutation p.T225K 0.44 tolerated(0.09) possibly_damaging(0.558) TCGA-55-7994-01 8 55533881 55533881 A C RP1 Missense_Mutation p.K119Q 0.14 tolerated(0.75) benign(0.265) TCGA-55-7994-01 8 59764243 59764243 T A TOX Missense_Mutation p.Q178L 0.13 deleterious(0.01) possibly_damaging(0.885) TCGA-55-7994-01 8 65494497 65494497 C T BHLHE22 3'UTR 0.36 TCGA-55-7994-01 8 68968167 68968167 G T PREX2 Missense_Mutation p.R399L 0.50 deleterious(0) probably_damaging(0.997) TCGA-55-7994-01 8 72755914 72755914 C A RP11-383H13.1 Missense_Mutation p.A93E 0.18 unknown(0) TCGA-55-7994-01 8 73849808 73849808 A T KCNB2 Missense_Mutation p.T740S 0.18 tolerated_low_confidence(0.47) benign(0.042) TCGA-55-7994-01 8 82371416 82371416 T A FABP9 Missense_Mutation p.D77V 0.18 deleterious(0) probably_damaging(1) TCGA-55-7994-01 8 86037083 86037083 T C LRRCC1 Missense_Mutation p.L394S 0.05 tolerated(0.45) benign(0.011) TCGA-55-7994-01 8 87060782 87060782 G T PSKH2 Missense_Mutation p.S356Y 0.63 deleterious(0) possibly_damaging(0.768) TCGA-55-7994-01 8 87235201 87235201 C A SLC7A13 Missense_Mutation p.D273Y 0.15 deleterious(0.01) possibly_damaging(0.885) TCGA-55-7994-01 8 88885714 88885714 C A DCAF4L2 Silent p.S162S 0.54 TCGA-55-7994-01 8 89053794 89053794 C A MMP16 Missense_Mutation p.L573F 0.11 deleterious(0.01) probably_damaging(0.981) TCGA-55-7994-01 8 91078188 91078188 G T CALB1 Missense_Mutation p.L130M 0.10 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 8 92352712 92352712 A G SLC26A7 Missense_Mutation p.Y320C 0.60 deleterious(0) probably_damaging(1) TCGA-55-7994-01 8 92407341 92407341 G C SLC26A7 3'Flank 0.54 TCGA-55-7994-01 8 99441239 99441239 C A KCNS2 Silent p.S344S 0.15 TCGA-55-7994-01 9 101168390 101168390 C G GABBR2 Missense_Mutation p.G424R 0.34 deleterious(0) probably_damaging(0.979) TCGA-55-7994-01 9 101748253 101748253 G T COL15A1 Missense_Mutation p.Q169H 0.41 deleterious(0) benign(0.255) TCGA-55-7994-01 9 108366500 108366500 G A FKTN Missense_Mutation p.G125D 0.58 tolerated(0.44) benign(0) TCGA-55-7994-01 9 113169575 113169575 G A SVEP1 Missense_Mutation p.R2769C 0.39 possibly_damaging(0.601) TCGA-55-7994-01 9 113213637 113213637 C G SVEP1 Missense_Mutation p.C1278S 0.36 probably_damaging(1) TCGA-55-7994-01 9 114994496 114994496 A T PTBP3 Silent p.P335P 0.44 TCGA-55-7994-01 9 123538418 123538418 C A FBXW2 Missense_Mutation p.G258W 0.49 deleterious(0) possibly_damaging(0.871) TCGA-55-7994-01 9 125772663 125772663 G A RABGAP1 Missense_Mutation p.D469N 0.42 tolerated(0.06) benign(0.1) TCGA-55-7994-01 9 130588883 130588883 C T ENG Silent p.K143K 0.48 TCGA-55-7994-01 9 13114006 13114006 G T MPDZ Missense_Mutation p.S1798R 0.44 tolerated(0.08) possibly_damaging(0.719) TCGA-55-7994-01 9 13216853 13216853 C A MPDZ Nonsense_Mutation p.G404* 0.56 TCGA-55-7994-01 9 132397634 132397634 A G NTMT1 Missense_Mutation p.D188G 0.48 tolerated(0.16) benign(0.001) TCGA-55-7994-01 9 133942393 133942393 G A LAMC3 Silent p.L798L 0.38 TCGA-55-7994-01 9 134151420 134151420 G A FAM78A Silent p.P49P 0.28 TCGA-55-7994-01 9 135458478 135458478 C A BARHL1 Silent p.I98I 0.49 TCGA-55-7994-01 9 135523917 135523917 G T DDX31 Silent p.I359I 0.06 TCGA-55-7994-01 9 137630605 137630605 C A COL5A1 Missense_Mutation p.P482H 0.45 probably_damaging(1) TCGA-55-7994-01 9 137716626 137716626 C T COL5A1 Missense_Mutation p.R1627W 0.52 unknown(0) TCGA-55-7994-01 9 137808285 137808285 C A FCN1 Missense_Mutation p.E42D 0.47 tolerated(0.87) benign(0.206) TCGA-55-7994-01 9 139409987 139409987 G A NOTCH1 Silent p.T617T 0.60 TCGA-55-7994-01 9 140331373 140331373 T A ENTPD8 Missense_Mutation p.E168V 0.13 deleterious(0) probably_damaging(1) TCGA-55-7994-01 9 140968491 140968491 C A CACNA1B Missense_Mutation p.F1610L 0.49 deleterious(0) possibly_damaging(0.824) TCGA-55-7994-01 9 15000353 15000353 G C RP11-54D18.3 RNA 0.11 TCGA-55-7994-01 9 16738391 16738391 G T BNC2 Silent p.V32V 0.64 TCGA-55-7994-01 9 18657655 18657655 G C ADAMTSL1 Missense_Mutation p.A285P 0.65 tolerated(0.09) possibly_damaging(0.759) TCGA-55-7994-01 9 18770633 18770633 C G ADAMTSL1 Missense_Mutation p.R751G 0.46 deleterious(0) probably_damaging(0.994) TCGA-55-7994-01 9 20363447 20363447 C G MLLT3 Intron 0.14 TCGA-55-7994-01 9 20866998 20866998 A G FOCAD Missense_Mutation p.H726R 0.11 deleterious(0) probably_damaging(0.986) TCGA-55-7994-01 9 21166255 21166255 C T IFNA21 Silent p.L119L 0.62 TCGA-55-7994-01 9 33385655 33385655 C G AQP7 Missense_Mutation p.Q245H 0.08 deleterious(0) possibly_damaging(0.608) TCGA-55-7994-01 9 35800089 35800089 A C NPR2 Missense_Mutation p.Q353P 0.62 tolerated(0.21) benign(0.008) TCGA-55-7994-01 9 35957273 35957273 C A OR2S2 Missense_Mutation p.D275Y 0.05 deleterious(0) probably_damaging(0.967) TCGA-55-7994-01 9 37020633 37020633 C A PAX5 Missense_Mutation p.R71M 0.60 deleterious(0) probably_damaging(0.988) TCGA-55-7994-01 9 40716218 40716218 C A FAM74A3 RNA 0.46 TCGA-55-7994-01 9 65507509 65507509 C T SPATA31A7 Silent p.Q102Q 0.22 TCGA-55-7994-01 9 7165314 7165314 A G KDM4C Missense_Mutation p.Y953C 0.69 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 9 77347647 77347647 C A TRPM6 Nonsense_Mutation p.G1928* 0.47 TCGA-55-7994-01 9 77377781 77377781 C A TRPM6 Missense_Mutation p.G1269V 0.47 tolerated_low_confidence(0.43) benign(0.04) TCGA-55-7994-01 9 79118070 79118070 G T GCNT1 Missense_Mutation p.R258L 0.47 deleterious(0.01) benign(0.178) TCGA-55-7994-01 9 84604706 84604706 C A SPATA31D1 Missense_Mutation p.A67D 0.48 deleterious(0) benign(0.158) TCGA-55-7994-01 9 95163390 95163390 G T OGN Silent p.P84P 0.40 TCGA-55-7994-01 9 95480174 95480174 C A BICD2 Missense_Mutation p.M721I 0.63 deleterious(0.02) benign(0.018) TCGA-55-7994-01 9 95480175 95480175 A T BICD2 Missense_Mutation p.M721K 0.62 deleterious(0) possibly_damaging(0.462) TCGA-55-7994-01 9 96261151 96261151 A T FAM120A Missense_Mutation p.H338L 0.23 tolerated(0.69) benign(0.005) TCGA-55-7994-01 9 98229462 98229462 G T PTCH1 Silent p.V832V 0.49 TCGA-55-7994-01 X 100364527 100364527 G A CENPI Missense_Mutation p.V144M 0.64 deleterious(0) probably_damaging(0.985) TCGA-55-7994-01 X 101818239 101818239 G A NXF4 RNA 0.61 TCGA-55-7994-01 X 104961438 104961438 G T IL1RAPL2 Missense_Mutation p.G284V 0.71 deleterious(0) probably_damaging(0.997) TCGA-55-7994-01 X 106144712 106144712 G A RIPPLY1 Silent p.H96H 0.63 TCGA-55-7994-01 X 106171707 106171707 G A CLDN2 Missense_Mutation p.M83I 0.70 deleterious(0.04) benign(0.062) TCGA-55-7994-01 X 107844633 107844633 G T COL4A5 Silent p.G653G 0.53 TCGA-55-7994-01 X 107865998 107865998 C A COL4A5 Missense_Mutation p.P954T 0.52 unknown(0) TCGA-55-7994-01 X 107865999 107865999 C A COL4A5 Missense_Mutation p.P954Q 0.52 unknown(0) TCGA-55-7994-01 X 109924844 109924844 C T CHRDL1 Missense_Mutation p.G341D 0.61 tolerated(0.68) benign(0.001) TCGA-55-7994-01 X 109937400 109937400 G T CHRDL1 Missense_Mutation p.H257N 0.30 deleterious(0.01) probably_damaging(0.991) TCGA-55-7994-01 X 111195481 111195481 C A TRPC5 Missense_Mutation p.E56D 0.64 tolerated(0.12) benign(0.168) TCGA-55-7994-01 X 111698857 111698857 C A ZCCHC16 Missense_Mutation p.P301T 0.56 tolerated(0.07) probably_damaging(0.934) TCGA-55-7994-01 X 11308580 11308580 G A ARHGAP6 Intron 0.48 TCGA-55-7994-01 X 114357643 114357643 G T LRCH2 Missense_Mutation p.N654K 0.44 tolerated(0.87) benign(0.281) TCGA-55-7994-01 X 12157102 12157102 C T FRMPD4 Silent p.F4F 0.64 TCGA-55-7994-01 X 127185085 127185085 C A ACTRT1 Silent p.G367G 0.74 TCGA-55-7994-01 X 134294449 134294449 G T CT55 Missense_Mutation p.A104D 0.64 tolerated(0.71) benign(0.002) TCGA-55-7994-01 X 135427292 135427292 C A GPR112 Missense_Mutation p.T476K 0.55 deleterious(0.04) possibly_damaging(0.738) TCGA-55-7994-01 X 135428792 135428792 C A GPR112 Missense_Mutation p.T976N 0.60 tolerated(0.1) benign(0.003) TCGA-55-7994-01 X 135429322 135429322 A G GPR112 Missense_Mutation p.I1153V 0.09 tolerated(0.13) benign(0.017) TCGA-55-7994-01 X 139866480 139866480 C A CDR1 Missense_Mutation p.D18Y 0.59 deleterious(0) probably_damaging(0.934) TCGA-55-7994-01 X 142596806 142596806 G T SPANXN3 Silent p.G88G 0.64 TCGA-55-7994-01 X 14592613 14592613 G T GLRA2 Intron 0.41 TCGA-55-7994-01 X 146318464 146318464 C - MIR508 RNA 0.40 TCGA-55-7994-01 X 149013014 149013014 C A MAGEA8 5'UTR 0.71 TCGA-55-7994-01 X 150345153 150345153 C A GPR50 5'UTR 0.71 TCGA-55-7994-01 X 150842426 150842426 C A PASD1 Missense_Mutation p.P648H 0.61 deleterious(0.02) probably_damaging(0.95) TCGA-55-7994-01 X 150842427 150842427 C A PASD1 Silent p.P648P 0.60 TCGA-55-7994-01 X 150912760 150912760 C A CNGA2 Silent p.V595V 0.67 TCGA-55-7994-01 X 151303804 151303804 C T MAGEA10 Missense_Mutation p.V97I 0.65 tolerated(1) benign(0.002) TCGA-55-7994-01 X 151366109 151366109 G C GABRA3 Silent p.V309V 0.64 TCGA-55-7994-01 X 151908860 151908860 G T CSAG1 Silent p.L33L 0.65 TCGA-55-7994-01 X 152710801 152710801 G C TREX2 Missense_Mutation p.L30V 0.42 deleterious(0.01) benign(0.266) TCGA-55-7994-01 X 153178971 153178971 C G ARHGAP4 Missense_Mutation p.Q446H 0.67 tolerated(0.11) possibly_damaging(0.823) TCGA-55-7994-01 X 1584780 1584780 C T P2RY8 Silent p.E224E 0.35 TCGA-55-7994-01 X 19971151 19971151 C A CXorf23 Missense_Mutation p.L528F 0.37 deleterious(0.04) possibly_damaging(0.527) TCGA-55-7994-01 X 2408367 2408367 C A ZBED1 Missense_Mutation p.G132C 0.46 tolerated(0.16) possibly_damaging(0.503) TCGA-55-7994-01 X 27766166 27766166 G T DCAF8L2 Missense_Mutation p.G385V 0.29 deleterious(0) possibly_damaging(0.839) TCGA-55-7994-01 X 3229375 3229375 T C MXRA5 Missense_Mutation p.Q2290R 0.25 deleterious(0) probably_damaging(0.974) TCGA-55-7994-01 X 3229376 3229376 G T MXRA5 Missense_Mutation p.Q2290K 0.26 tolerated(0.05) possibly_damaging(0.728) TCGA-55-7994-01 X 3242051 3242051 C G MXRA5 Missense_Mutation p.V559L 0.40 deleterious(0) probably_damaging(0.999) TCGA-55-7994-01 X 34148840 34148840 G T FAM47A Nonsense_Mutation p.S519* 0.38 TCGA-55-7994-01 X 35820307 35820307 G C MAGEB16 5'UTR 0.44 TCGA-55-7994-01 X 35985933 35985933 C G CXorf22 Missense_Mutation p.H600D 0.50 tolerated(0.32) benign(0.005) TCGA-55-7994-01 X 37027803 37027803 G T FAM47C Silent p.P440P 0.47 TCGA-55-7994-01 X 41587188 41587188 C G GPR82 Missense_Mutation p.S303R 0.12 deleterious(0) probably_damaging(0.993) TCGA-55-7994-01 X 47432282 47432282 G C SYN1 Missense_Mutation p.A700G 0.49 deleterious(0) benign(0.364) TCGA-55-7994-01 X 49105346 49105346 C T CCDC22 Silent p.I500I 0.23 TCGA-55-7994-01 X 50136184 50136184 C A DGKK RNA 0.58 TCGA-55-7994-01 X 53246992 53246992 C A KDM5C Nonsense_Mutation p.G170* 0.50 TCGA-55-7994-01 X 54840889 54840889 C T MAGED2 Intron 0.50 TCGA-55-7994-01 X 54841723 54841723 G T MAGED2 Nonsense_Mutation p.E477* 0.41 TCGA-55-7994-01 X 65824998 65824998 C T EDA2R Nonsense_Mutation p.W53* 0.38 TCGA-55-7994-01 X 71350436 71350436 G C RGAG4 Missense_Mutation p.L319V 0.04 deleterious(0.02) possibly_damaging(0.73) TCGA-55-7994-01 X 76939598 76939598 T A ATRX Missense_Mutation p.S384C 0.64 benign(0.376) TCGA-55-7994-01 X 77225037 77225037 C T PGAM4 Silent p.A33A 0.55 TCGA-55-7994-01 X 77245344 77245344 G T ATP7A Missense_Mutation p.R409L 0.65 tolerated(0.18) benign(0.006) TCGA-55-7994-01 X 77301868 77301868 G A ATP7A Missense_Mutation p.S1435N 0.65 deleterious(0) probably_damaging(0.938) TCGA-55-7994-01 X 78011208 78011208 C A LPAR4 Missense_Mutation p.T281N 0.59 tolerated(0.33) benign(0.158) TCGA-55-7994-01 X 78216338 78216338 G C P2RY10 Silent p.L107L 0.61 TCGA-55-7994-01 X 78427235 78427235 C A GPR174 Missense_Mutation p.A244E 0.61 deleterious(0.01) probably_damaging(0.95) TCGA-55-7994-01 X 78616853 78616853 G A ITM2A Missense_Mutation p.R226C 0.71 tolerated(0.07) benign(0.159) TCGA-55-7994-01 X 86772935 86772935 G C KLHL4 Missense_Mutation p.Q13H 0.68 tolerated_low_confidence(0.13) probably_damaging(0.999) TCGA-55-7994-01 X 86888890 86888890 G C KLHL4 Missense_Mutation p.G564A 0.64 tolerated(0.17) benign(0.309) TCGA-55-7995-01 10 100904094 100904094 C T HPSE2 Missense_Mutation p.D171N 0.25 tolerated(0.07) probably_damaging(0.999) TCGA-55-7995-01 10 101578648 101578648 G C ABCC2 Silent p.V791V 0.40 TCGA-55-7995-01 10 102053076 102053076 G C PKD2L1 Missense_Mutation p.Q574E 0.54 tolerated(0.06) benign(0.045) TCGA-55-7995-01 10 103899922 103899922 G T PPRC1 Missense_Mutation p.G553C 0.39 tolerated_low_confidence(0.06) benign(0.006) TCGA-55-7995-01 10 104414868 104414868 G T TRIM8 Missense_Mutation p.R233L 0.45 deleterious(0.04) benign(0.196) TCGA-55-7995-01 10 105797470 105797470 T C COL17A1 Silent p.P1044P 0.39 TCGA-55-7995-01 10 122648616 122648616 C T WDR11 Silent p.I716I 0.12 TCGA-55-7995-01 10 17171714 17171714 T C CUBN Missense_Mutation p.I17M 0.46 tolerated(0.26) benign(0.002) TCGA-55-7995-01 10 18250767 18250767 G T SLC39A12 Missense_Mutation p.Q173H 0.51 tolerated(0.17) benign(0.009) TCGA-55-7995-01 10 29578131 29578131 G T LYZL1 Missense_Mutation p.G29W 0.59 deleterious_low_confidence(0.02) possibly_damaging(0.815) TCGA-55-7995-01 10 38246389 38246389 T A ZNF25 Missense_Mutation p.K34M 0.51 deleterious(0) possibly_damaging(0.905) TCGA-55-7995-01 10 45799121 45799121 C A OR13A1 Missense_Mutation p.W250C 0.48 deleterious(0) benign(0.003) TCGA-55-7995-01 10 68687038 68687038 T A LRRTM3 Missense_Mutation p.S122T 0.48 tolerated(1) benign(0.007) TCGA-55-7995-01 10 69926349 69926349 C A MYPN Missense_Mutation p.N633K 0.45 deleterious(0.02) benign(0.241) TCGA-55-7995-01 10 7679399 7679399 G - ITIH5 Frame_Shift_Del p.S149Afs*9 0.28 TCGA-55-7995-01 10 81700540 81700540 A T SFTPD Silent p.V224V 0.40 TCGA-55-7995-01 10 98156988 98156988 T A TLL2 Missense_Mutation p.S447C 0.40 deleterious(0.02) possibly_damaging(0.554) TCGA-55-7995-01 10 99968826 99968826 G C R3HCC1L Missense_Mutation p.E319Q 0.29 deleterious_low_confidence(0) possibly_damaging(0.901) TCGA-55-7995-01 11 100996764 100996764 T A PGR Missense_Mutation p.K588M 0.33 deleterious(0) probably_damaging(1) TCGA-55-7995-01 11 105948473 105948473 A G AASDHPPT Silent p.P12P 0.25 TCGA-55-7995-01 11 111957629 111957629 G A SDHD 5'UTR 0.25 TCGA-55-7995-01 11 114453661 114453661 A G NXPE4 Missense_Mutation p.I60T 0.04 tolerated(0.5) benign(0.01) TCGA-55-7995-01 11 1162077 1162077 C G MUC5AC Missense_Mutation p.F556L 0.17 deleterious(0.04) possibly_damaging(0.741) TCGA-55-7995-01 11 117050138 117050138 C A SIDT2 Missense_Mutation p.F53L 0.32 tolerated(0.07) benign(0.338) TCGA-55-7995-01 11 117712574 117712574 T C FXYD6 Missense_Mutation p.Q35R 0.30 tolerated(0.07) benign(0.18) TCGA-55-7995-01 11 123848357 123848357 C T OR10S1 Silent p.T14T 0.37 TCGA-55-7995-01 11 123894322 123894322 C T OR10G9 Silent p.D201D 0.33 TCGA-55-7995-01 11 123900818 123900818 C G OR10G8 Missense_Mutation p.F163L 0.03 deleterious(0) probably_damaging(0.999) TCGA-55-7995-01 11 123901131 123901131 G T OR10G8 Missense_Mutation p.D268Y 0.22 tolerated(0.05) probably_damaging(0.98) TCGA-55-7995-01 11 124413072 124413072 C A OR8B12 Missense_Mutation p.G160V 0.38 tolerated_low_confidence(0.06) benign(0.098) TCGA-55-7995-01 11 124742421 124742421 G T ROBO3 Missense_Mutation p.A435S 0.44 tolerated(0.06) probably_damaging(0.999) TCGA-55-7995-01 11 133801006 133801006 C A IGSF9B Missense_Mutation p.K464N 0.17 tolerated(0.24) probably_damaging(0.962) TCGA-55-7995-01 11 134257515 134257515 G A B3GAT1 Silent p.I13I 0.34 TCGA-55-7995-01 11 14497380 14497380 T C COPB1 Missense_Mutation p.T523A 0.48 deleterious(0.01) probably_damaging(0.955) TCGA-55-7995-01 11 1651441 1651441 G T KRTAP5-5 Missense_Mutation p.G124V 0.30 deleterious_low_confidence(0) unknown(0) TCGA-55-7995-01 11 17432149 17432149 C A ABCC8 Missense_Mutation p.A870S 0.10 tolerated(0.07) benign(0.004) TCGA-55-7995-01 11 18750446 18750446 G A PTPN5 3'UTR 0.16 TCGA-55-7995-01 11 21250966 21250966 A T NELL1 Missense_Mutation p.K505N 0.44 tolerated(0.06) benign(0.044) TCGA-55-7995-01 11 21594797 21594797 G T NELL1 Nonsense_Mutation p.E742* 0.15 TCGA-55-7995-01 11 25004766 25004766 C G LUZP2 Nonsense_Mutation p.S231* 0.14 TCGA-55-7995-01 11 26663460 26663460 G C ANO3 Missense_Mutation p.W720S 0.12 deleterious(0) probably_damaging(1) TCGA-55-7995-01 11 28116282 28116282 C A KIF18A Nonsense_Mutation p.G131* 0.14 TCGA-55-7995-01 11 28119505 28119505 C T KIF18A 5'UTR 0.07 TCGA-55-7995-01 11 31349749 31349749 C A DCDC1 Missense_Mutation p.V27L 0.34 tolerated_low_confidence(0.25) benign(0.004) TCGA-55-7995-01 11 33564071 33564071 C T KIAA1549L Missense_Mutation p.S24L 0.06 tolerated_low_confidence(0.08) benign(0.004) TCGA-55-7995-01 11 3380818 3380818 C T ZNF195 Missense_Mutation p.V474I 0.15 deleterious(0) probably_damaging(0.935) TCGA-55-7995-01 11 34097944 34097944 A G CAPRIN1 Silent p.P176P 0.47 TCGA-55-7995-01 11 3427872 3427872 G A TSSC2 RNA 0.13 TCGA-55-7995-01 11 36631636 36631636 G T C11orf74 5'UTR 0.52 TCGA-55-7995-01 11 45827427 45827427 G C SLC35C1 Missense_Mutation p.E25D 0.47 tolerated_low_confidence(0.5) benign(0.001) TCGA-55-7995-01 11 47311842 47311842 A G MADD Missense_Mutation p.Y1049C 0.56 deleterious(0) possibly_damaging(0.827) TCGA-55-7995-01 11 48327871 48327871 C A OR4S1 Missense_Mutation p.H33N 0.16 deleterious(0) benign(0.355) TCGA-55-7995-01 11 49208318 49208318 C A FOLH1 Missense_Mutation p.D173Y 0.42 deleterious(0) probably_damaging(0.987) TCGA-55-7995-01 11 49974689 49974689 G T OR4C13 Missense_Mutation p.V239F 0.45 tolerated_low_confidence(0.08) benign(0.098) TCGA-55-7995-01 11 51515343 51515343 T C OR4C46 Missense_Mutation p.M21T 0.38 tolerated_low_confidence(0.05) benign(0.015) TCGA-55-7995-01 11 5221569 5221569 G T OR51V1 Missense_Mutation p.S121Y 0.43 deleterious(0) possibly_damaging(0.521) TCGA-55-7995-01 11 5462625 5462625 G T OR51I1 Silent p.S40S 0.28 TCGA-55-7995-01 11 55065389 55065389 C A TRIM51HP RNA 0.26 TCGA-55-7995-01 11 55136172 55136172 C A OR4A15 Missense_Mutation p.H271Q 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-7995-01 11 55579154 55579154 T G OR5L1 Missense_Mutation p.F71C 0.32 deleterious(0.02) probably_damaging(0.954) TCGA-55-7995-01 11 55606605 55606605 G A OR5D16 Silent p.V126V 0.25 TCGA-55-7995-01 11 55735809 55735809 G T OR10AG1 Missense_Mutation p.P44H 0.21 deleterious(0.01) benign(0.061) TCGA-55-7995-01 11 55861499 55861499 C A OR8I2 Missense_Mutation p.T239N 0.18 deleterious(0) probably_damaging(0.952) TCGA-55-7995-01 11 55872906 55872906 C A OR8H2 Missense_Mutation p.L130I 0.15 deleterious(0) probably_damaging(0.999) TCGA-55-7995-01 11 56043676 56043676 C G OR5T1 Missense_Mutation p.H188D 0.33 deleterious(0.01) benign(0.443) TCGA-55-7995-01 11 56143407 56143407 G A OR8U1 Missense_Mutation p.C103Y 0.17 tolerated(0.41) benign(0.273) TCGA-55-7995-01 11 56511046 56511046 A G OR9G4 Missense_Mutation p.L81P 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-7995-01 11 59224568 59224568 T A OR4D6 Silent p.I45I 0.35 TCGA-55-7995-01 11 59481041 59481041 A G OR10V1 Missense_Mutation p.V93A 0.34 deleterious(0) benign(0.081) TCGA-55-7995-01 11 60164096 60164096 T A MS4A14 Silent p.T15T 0.48 TCGA-55-7995-01 11 60183087 60183087 C T MS4A14 Missense_Mutation p.P249S 0.41 tolerated(0.1) possibly_damaging(0.614) TCGA-55-7995-01 11 62595032 62595032 C A STX5 Splice_Site p.X99_splice 0.16 TCGA-55-7995-01 11 63174166 63174166 T C SLC22A9 Missense_Mutation p.I424T 0.26 tolerated(0.74) benign(0.01) TCGA-55-7995-01 11 64533601 64533601 C T SF1 Intron 0.17 TCGA-55-7995-01 11 6479305 6479305 T C TRIM3 Missense_Mutation p.H118R 0.34 deleterious(0) probably_damaging(0.999) TCGA-55-7995-01 11 65124381 65124381 G T TIGD3 Missense_Mutation p.G368C 0.32 tolerated(0.2) benign(0.005) TCGA-55-7995-01 11 7059801 7059801 C G NLRP14 5'UTR 0.43 TCGA-55-7995-01 11 71726349 71726349 G A NUMA1 Missense_Mutation p.R734C 0.20 benign(0.005) TCGA-55-7995-01 11 71821393 71821393 A C LRTOMT 3'UTR 0.19 TCGA-55-7995-01 11 76372202 76372202 C T LRRC32 Silent p.L145L 0.33 TCGA-55-7995-01 11 76507172 76507172 G C TSKU Missense_Mutation p.R171P 0.32 tolerated(0.11) benign(0.302) TCGA-55-7995-01 11 8013694 8013694 G T EIF3F Nonsense_Mutation p.E167* 0.10 TCGA-55-7995-01 11 802801 802801 C A PIDD Missense_Mutation p.R267L 0.57 tolerated(0.08) probably_damaging(0.927) TCGA-55-7995-01 11 92714750 92714750 G A MTNR1B Missense_Mutation p.G121S 0.32 deleterious(0.05) possibly_damaging(0.654) TCGA-55-7995-01 11 95712160 95712160 G C MAML2 Missense_Mutation p.D1141E 0.24 unknown(0) TCGA-55-7995-01 12 100200213 100200213 A T ANKS1B Missense_Mutation p.L213Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-55-7995-01 12 100491177 100491177 T C UHRF1BP1L Missense_Mutation p.N212S 0.16 deleterious(0) probably_damaging(0.979) TCGA-55-7995-01 12 100491183 100491183 A T UHRF1BP1L Missense_Mutation p.I210K 0.15 deleterious(0) probably_damaging(0.921) TCGA-55-7995-01 12 100657618 100657618 G A DEPDC4 Missense_Mutation p.L71F 0.23 deleterious(0) probably_damaging(0.992) TCGA-55-7995-01 12 100717320 100717320 C T SCYL2 Silent p.I471I 0.11 TCGA-55-7995-01 12 101442141 101442141 G A ANO4 Missense_Mutation p.G390E 0.21 tolerated(0.35) benign(0.206) TCGA-55-7995-01 12 102023308 102023308 G T MYBPC1 Missense_Mutation p.G67V 0.30 tolerated(0.55) possibly_damaging(0.683) TCGA-55-7995-01 12 103232996 103232996 C G PAH Missense_Mutation p.S439T 0.18 tolerated(0.46) benign(0.005) TCGA-55-7995-01 12 104067779 104067779 C A STAB2 Silent p.L822L 0.26 TCGA-55-7995-01 12 104340609 104340609 T C HSP90B1 Missense_Mutation p.F718L 0.12 tolerated(0.12) benign(0.039) TCGA-55-7995-01 12 104645316 104645316 C A TXNRD1 Missense_Mutation p.H35N 0.25 tolerated_low_confidence(0.41) benign(0.001) TCGA-55-7995-01 12 106821066 106821066 C A POLR3B Missense_Mutation p.A398D 0.21 tolerated(0.09) benign(0.03) TCGA-55-7995-01 12 107395551 107395551 C A CRY1 Nonsense_Mutation p.E196* 0.21 TCGA-55-7995-01 12 10746408 10746408 T A KLRAP1 RNA 0.40 TCGA-55-7995-01 12 108634128 108634128 A T WSCD2 Missense_Mutation p.K384N 0.26 deleterious(0) possibly_damaging(0.717) TCGA-55-7995-01 12 11060986 11060986 T C TAS2R13 Nonstop_Mutation p.*304Wext*27 0.30 TCGA-55-7995-01 12 110977727 110977727 G A PPTC7 Missense_Mutation p.S209F 0.26 deleterious(0.01) benign(0.375) TCGA-55-7995-01 12 112915756 112915756 G A PTPN11 Silent p.R343R 0.25 TCGA-55-7995-01 12 11339406 11339406 G A TAS2R42 Silent p.F46F 0.28 TCGA-55-7995-01 12 117685234 117685234 C A NOS1 Missense_Mutation p.E948D 0.25 deleterious(0.01) possibly_damaging(0.896) TCGA-55-7995-01 12 125457122 125457124 TAC - DHX37 In_Frame_Del p.Y335del 0.27 TCGA-55-7995-01 12 130856164 130856164 C G PIWIL1 3'UTR 0.18 TCGA-55-7995-01 12 130912746 130912746 C A RIMBP2 Missense_Mutation p.G780V 0.17 tolerated(0.53) benign(0.005) TCGA-55-7995-01 12 132529932 132529932 G C EP400 Missense_Mutation p.A2285P 0.11 unknown(0) TCGA-55-7995-01 12 13769486 13769486 G T GRIN2B Missense_Mutation p.L411M 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-55-7995-01 12 18889208 18889208 G T PLCZ1 Missense_Mutation p.L28I 0.21 deleterious(0) possibly_damaging(0.808) TCGA-55-7995-01 12 30787190 30787190 T G IPO8 Missense_Mutation p.N909T 0.26 tolerated(0.13) benign(0.006) TCGA-55-7995-01 12 40265664 40265664 T C SLC2A13 Silent p.T378T 0.30 TCGA-55-7995-01 12 46760712 46760712 G A SLC38A2 Silent p.L166L 0.32 TCGA-55-7995-01 12 48387785 48387785 C A COL2A1 Missense_Mutation p.G288C 0.26 unknown(0) TCGA-55-7995-01 12 49428009 49428009 C A KMT2D Silent p.V3527V 0.17 TCGA-55-7995-01 12 49435155 49435156 GC - KMT2D Frame_Shift_Del p.A2133Rfs*21 0.24 TCGA-55-7995-01 12 51130885 51130885 C T DIP2B Missense_Mutation p.L1390F 0.41 deleterious(0) probably_damaging(0.997) TCGA-55-7995-01 12 52713060 52713060 G A KRT83 Missense_Mutation p.P158L 0.34 deleterious(0.02) benign(0.35) TCGA-55-7995-01 12 52789933 52789933 C A KRT82 Silent p.G384G 0.25 TCGA-55-7995-01 12 53609519 53609519 G C RARG Missense_Mutation p.P82A 0.22 deleterious(0.02) possibly_damaging(0.529) TCGA-55-7995-01 12 54674575 54674575 C G HNRNPA1 5'UTR 0.28 TCGA-55-7995-01 12 55641137 55641137 G A OR6C74 Silent p.Q22Q 0.35 TCGA-55-7995-01 12 55725523 55725523 C A OR6C3 Silent p.G13G 0.14 TCGA-55-7995-01 12 57642487 57642487 A G STAC3 Splice_Site p.X144_splice 0.18 TCGA-55-7995-01 12 59280641 59280641 T C LRIG3 Missense_Mutation p.I375V 0.30 tolerated(0.13) probably_damaging(0.995) TCGA-55-7995-01 12 67072650 67072650 A T GRIP1 Missense_Mutation p.I12N 0.12 deleterious_low_confidence(0) benign(0.054) TCGA-55-7995-01 12 7076739 7076739 G C PHB2 Intron 0.12 TCGA-55-7995-01 12 82792890 82792890 G C METTL25 Missense_Mutation p.G283A 0.11 tolerated(0.31) benign(0.301) TCGA-55-7995-01 12 8618164 8618164 G T CLEC6A Missense_Mutation p.S103I 0.27 deleterious(0) possibly_damaging(0.822) TCGA-55-7995-01 12 9006798 9006798 C T A2ML1 Missense_Mutation p.P889S 0.27 deleterious(0.04) probably_damaging(0.962) TCGA-55-7995-01 12 91347467 91347467 C A CCER1 Missense_Mutation p.E351D 0.24 tolerated(0.39) unknown(0) TCGA-55-7995-01 12 95650981 95650981 A T VEZT Missense_Mutation p.Q75L 0.37 tolerated(0.05) benign(0.04) TCGA-55-7995-01 12 97045379 97045379 G T C12orf55 Missense_Mutation p.R1629L 0.20 deleterious(0) possibly_damaging(0.834) TCGA-55-7995-01 13 100909878 100909878 G T PCCA Missense_Mutation p.G223C 0.26 deleterious(0) probably_damaging(1) TCGA-55-7995-01 13 101736126 101736126 T G NALCN Missense_Mutation p.R1173S 0.20 deleterious(0) possibly_damaging(0.484) TCGA-55-7995-01 13 102029330 102029330 G T NALCN Silent p.I151I 0.29 TCGA-55-7995-01 13 102047678 102047678 G T NALCN Missense_Mutation p.S49R 0.18 deleterious(0) probably_damaging(0.998) TCGA-55-7995-01 13 103301761 103301761 A T TPP2 Silent p.I959I 0.23 TCGA-55-7995-01 13 103698435 103698435 C A SLC10A2 3'UTR 0.15 TCGA-55-7995-01 13 111138181 111138181 C T COL4A2 Missense_Mutation p.R1069W 0.20 possibly_damaging(0.898) TCGA-55-7995-01 13 113729334 113729334 C T MCF2L Missense_Mutation p.A380V 0.31 tolerated(0.6) benign(0.005) TCGA-55-7995-01 13 25901597 25901597 C G NUPL1 Missense_Mutation p.Q394E 0.22 tolerated(0.75) benign(0.052) TCGA-55-7995-01 13 29278158 29278158 G A SLC46A3 Missense_Mutation p.S408L 0.28 deleterious(0) benign(0.421) TCGA-55-7995-01 13 33110371 33110371 C A N4BP2L2 Intron 0.51 TCGA-55-7995-01 13 36900663 36900663 C G SPG20 Intron 0.41 TCGA-55-7995-01 13 49282012 49282012 C A CYSLTR2 3'UTR 0.21 TCGA-55-7995-01 13 49282013 49282013 C T CYSLTR2 3'UTR 0.23 TCGA-55-7995-01 13 58208724 58208724 C A PCDH17 Missense_Mutation p.R682S 0.46 tolerated(0.8) benign(0.176) TCGA-55-7995-01 13 60348335 60348335 C A DIAPH3 Missense_Mutation p.V1103F 0.33 tolerated_low_confidence(0.12) benign(0.342) TCGA-55-7995-01 13 74419981 74419981 C A KLF12 Missense_Mutation p.G218V 0.18 tolerated(0.07) benign(0.005) TCGA-55-7995-01 13 76429423 76429423 C G LMO7 Intron 0.15 TCGA-55-7995-01 13 95735455 95735455 G C ABCC4 Missense_Mutation p.F875L 0.29 deleterious(0.04) possibly_damaging(0.614) TCGA-55-7995-01 13 95858785 95858785 C T ABCC4 Splice_Site p.X387_splice 0.30 TCGA-55-7995-01 13 96743747 96743747 G T HS6ST3 Missense_Mutation p.D211Y 0.29 deleterious(0) probably_damaging(1) TCGA-55-7995-01 14 102478435 102478435 C A DYNC1H1 Missense_Mutation p.T2281K 0.12 probably_damaging(1) TCGA-55-7995-01 14 104000956 104000956 G T TRMT61A Missense_Mutation p.R223L 0.24 tolerated(0.78) benign(0) TCGA-55-7995-01 14 106053610 106053610 C A IGHA2 Silent p.L229L 0.21 TCGA-55-7995-01 14 107078644 107078644 C A IGHV1-58 Missense_Mutation p.G27V 0.24 probably_damaging(0.991) TCGA-55-7995-01 14 19563486 19563486 C T POTEG Nonsense_Mutation p.Q334* 0.12 TCGA-55-7995-01 14 20389617 20389617 C T OR4K5 Silent p.P284P 0.09 TCGA-55-7995-01 14 21546418 21546418 A G ARHGEF40 Missense_Mutation p.E706G 0.13 tolerated(0.38) benign(0.05) TCGA-55-7995-01 14 23070661 23070661 G T ABHD4 Splice_Site p.X38_splice 0.21 TCGA-55-7995-01 14 23886772 23886772 G T MYH7 Missense_Mutation p.D1431E 0.27 tolerated(0.17) probably_damaging(0.918) TCGA-55-7995-01 14 23900974 23900974 C - MYH7 Frame_Shift_Del p.G212Afs*52 0.13 TCGA-55-7995-01 14 24542745 24542745 C A CPNE6 Missense_Mutation p.P69H 0.28 deleterious(0) probably_damaging(1) TCGA-55-7995-01 14 24845725 24845725 G T NFATC4 Missense_Mutation p.G824V 0.20 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-55-7995-01 14 31058632 31058632 G T G2E3 Missense_Mutation p.G60V 0.46 deleterious(0) probably_damaging(1) TCGA-55-7995-01 14 34204452 34204452 G C NPAS3 Missense_Mutation p.D256H 0.31 tolerated(0.08) benign(0.162) TCGA-55-7995-01 14 38679255 38679255 G T SSTR1 Missense_Mutation p.V221L 0.32 tolerated(0.06) benign(0.14) TCGA-55-7995-01 14 39639342 39639342 G A TRAPPC6B 5'UTR 0.23 TCGA-55-7995-01 14 39796193 39796193 G T CTAGE5 Missense_Mutation p.D605Y 0.36 deleterious(0) possibly_damaging(0.667) TCGA-55-7995-01 14 44976072 44976072 C A FSCB Missense_Mutation p.S40I 0.28 deleterious(0) possibly_damaging(0.827) TCGA-55-7995-01 14 50550584 50550584 G A C14orf183 Nonsense_Mutation p.Q254* 0.27 TCGA-55-7995-01 14 51443999 51443999 C A TRIM9 3'UTR 0.23 TCGA-55-7995-01 14 55817739 55817739 G T FBXO34 Missense_Mutation p.V211F 0.28 deleterious(0) probably_damaging(0.999) TCGA-55-7995-01 14 55907239 55907239 G T TBPL2 Silent p.R9R 0.25 TCGA-55-7995-01 14 58937330 58937330 G C KIAA0586 Splice_Site p.X868_splice 0.37 TCGA-55-7995-01 14 59112635 59112635 A T DACT1 Missense_Mutation p.R432W 0.25 tolerated(0.06) probably_damaging(1) TCGA-55-7995-01 14 64065999 64065999 C A WDR89 Missense_Mutation p.C221F 0.46 tolerated(0.75) benign(0) TCGA-55-7995-01 14 64634303 64634303 A T SYNE2 Missense_Mutation p.K5617N 0.46 benign(0.075) TCGA-55-7995-01 14 73413847 73413847 C T DCAF4 Intron 0.22 TCGA-55-7995-01 14 77580630 77580630 T - CIPC Frame_Shift_Del p.L390Qfs*20 0.32 TCGA-55-7995-01 14 81209601 81209601 T - CEP128 Frame_Shift_Del p.Q875Rfs*7 0.22 TCGA-55-7995-01 14 89205259 89205259 C A EML5 Missense_Mutation p.V271L 0.41 tolerated(0.26) benign(0.002) TCGA-55-7995-01 14 94063719 94063719 G T UNC79 Missense_Mutation p.V892L 0.23 tolerated(0.14) probably_damaging(0.994) TCGA-55-7995-01 15 100340290 100340290 C G DNM1P46 RNA 0.44 TCGA-55-7995-01 15 20496702 20496702 C G CHEK2P2 RNA 0.08 TCGA-55-7995-01 15 24923869 24923869 A G NPAP1 Missense_Mutation p.Y952C 0.41 tolerated(0.18) probably_damaging(0.924) TCGA-55-7995-01 15 25200159 25200159 G T SNRPN Intron 0.27 TCGA-55-7995-01 15 28366563 28366563 G A HERC2 Missense_Mutation p.R4401W 0.37 probably_damaging(0.999) TCGA-55-7995-01 15 29092288 29092288 G T GOLGA6L7P RNA 0.42 TCGA-55-7995-01 15 31251094 31251094 C A MTMR10 Missense_Mutation p.V303L 0.44 tolerated(0.38) benign(0.004) TCGA-55-7995-01 15 34145778 34145778 T A RYR3 Missense_Mutation p.L4565H 0.41 possibly_damaging(0.827) TCGA-55-7995-01 15 40590843 40590843 T A PLCB2 Missense_Mutation p.D306V 0.42 deleterious(0) probably_damaging(0.948) TCGA-55-7995-01 15 43378432 43378432 C T UBR1 Missense_Mutation p.D30N 0.35 tolerated(0.47) benign(0.118) TCGA-55-7995-01 15 43940196 43940196 G C CATSPER2 Missense_Mutation p.L22V 0.50 deleterious(0.01) probably_damaging(0.977) TCGA-55-7995-01 15 48063797 48063797 C T SEMA6D Nonsense_Mutation p.Q1013* 0.21 TCGA-55-7995-01 15 50904771 50904771 A C TRPM7 Missense_Mutation p.S676A 0.22 tolerated(0.13) benign(0.011) TCGA-55-7995-01 15 57835951 57835962 TGCGACAAGATT - CGNL1 In_Frame_Del p.C1117_I1120del 0.21 TCGA-55-7995-01 15 65946196 65946196 C G SLC24A1 Missense_Mutation p.L1027V 0.17 benign(0.127) TCGA-55-7995-01 15 69238280 69238280 A G SPESP1 Missense_Mutation p.E136G 0.25 tolerated(0.07) benign(0.318) TCGA-55-7995-01 15 77906891 77906891 G T LINGO1 Missense_Mutation p.P453Q 0.63 tolerated(0.35) benign(0.039) TCGA-55-7995-01 15 84706466 84706466 A T ADAMTSL3 Missense_Mutation p.T1662S 0.43 tolerated(0.26) benign(0.098) TCGA-55-7995-01 15 89173308 89173308 C G AEN Nonsense_Mutation p.S254* 0.36 TCGA-55-7995-01 15 90227119 90227119 G A PEX11A Missense_Mutation p.T78I 0.56 deleterious(0.01) possibly_damaging(0.511) TCGA-55-7995-01 16 103541 103541 C T POLR3K Missense_Mutation p.E16K 0.16 tolerated(0.26) benign(0.014) TCGA-55-7995-01 16 15711302 15711302 G C KIAA0430 Silent p.L937L 0.25 TCGA-55-7995-01 16 16177269 16177269 C G ABCC1 Missense_Mutation p.S721C 0.18 deleterious(0) probably_damaging(0.958) TCGA-55-7995-01 16 16243960 16243960 T C ABCC6 3'UTR 0.10 TCGA-55-7995-01 16 20554245 20554245 G T ACSM2B Silent p.V500V 0.31 TCGA-55-7995-01 16 21261497 21261497 A G ANKS4B Missense_Mutation p.T204A 0.22 deleterious(0.02) benign(0.11) TCGA-55-7995-01 16 23716242 23716242 G T ERN2 Missense_Mutation p.D320E 0.20 tolerated(0.87) benign(0.076) TCGA-55-7995-01 16 23716244 23716244 C T ERN2 Missense_Mutation p.D320N 0.20 tolerated(0.19) benign(0.004) TCGA-55-7995-01 16 23716246 23716246 C G ERN2 Missense_Mutation p.R319P 0.20 tolerated(0.13) benign(0.097) TCGA-55-7995-01 16 2835854 2835854 C A PRSS33 Missense_Mutation p.G63V 0.46 deleterious(0.04) possibly_damaging(0.558) TCGA-55-7995-01 16 29912545 29912545 G T ASPHD1 Missense_Mutation p.G85W 0.27 deleterious(0) probably_damaging(1) TCGA-55-7995-01 16 30777537 30777537 T A RNF40 Silent p.R349R 0.25 TCGA-55-7995-01 16 32893915 32893915 C A RP11-989E6.3 5'Flank 0.06 TCGA-55-7995-01 16 4849746 4849746 A C ROGDI Missense_Mutation p.Y125D 0.40 tolerated(0.65) benign(0.076) TCGA-55-7995-01 16 57112965 57112965 A T NLRC5 Silent p.L1695L 0.52 TCGA-55-7995-01 16 77328923 77328923 T G ADAMTS18 Missense_Mutation p.E968A 0.51 tolerated(0.15) benign(0.019) TCGA-55-7995-01 16 87748112 87748112 C T KLHDC4 Missense_Mutation p.G276E 0.46 tolerated(0.09) benign(0.386) TCGA-55-7995-01 17 15217421 15217421 C A TEKT3 Silent p.V287V 0.38 TCGA-55-7995-01 17 1577912 1577912 C T PRPF8 Silent p.V1041V 0.29 TCGA-55-7995-01 17 16338205 16338205 G T TRPV2 Missense_Mutation p.V706L 0.11 deleterious(0) benign(0.139) TCGA-55-7995-01 17 18584076 18584076 A G ZNF286B Missense_Mutation p.L35P 0.22 tolerated(0.08) possibly_damaging(0.889) TCGA-55-7995-01 17 21730760 21730760 C A UBBP4 Missense_Mutation p.A21D 0.70 tolerated(1) benign(0.001) TCGA-55-7995-01 17 29701132 29701132 G C NF1 Missense_Mutation p.A2827P 0.28 tolerated_low_confidence(0.11) possibly_damaging(0.559) TCGA-55-7995-01 17 33486448 33486448 G A UNC45B Missense_Mutation p.S288N 0.43 tolerated(0.76) benign(0.005) TCGA-55-7995-01 17 34235509 34235509 G C AC015849.16 RNA 0.13 TCGA-55-7995-01 17 34499273 34499273 G T TBC1D3B Missense_Mutation p.D146E 0.10 deleterious(0.01) possibly_damaging(0.644) TCGA-55-7995-01 17 36491519 36491519 A T GPR179 Missense_Mutation p.L454Q 0.14 deleterious(0) probably_damaging(0.991) TCGA-55-7995-01 17 36533578 36533578 C T SOCS7 Missense_Mutation p.R467C 0.13 deleterious(0.01) benign(0.249) TCGA-55-7995-01 17 39138655 39138655 C G KRT40 Silent p.G197G 0.21 TCGA-55-7995-01 17 39535825 39535825 C A KRT34 Silent p.T291T 0.23 TCGA-55-7995-01 17 39553642 39553642 G C KRT31 Silent p.G50G 0.19 TCGA-55-7995-01 17 40341806 40341806 G A GHDC Missense_Mutation p.P503L 0.42 tolerated(0.07) benign(0.202) TCGA-55-7995-01 17 40872352 40872352 C T EZH1 Silent p.K201K 0.18 TCGA-55-7995-01 17 42266554 42266554 T G TMUB2 Missense_Mutation p.L67R 0.32 deleterious(0) probably_damaging(0.999) TCGA-55-7995-01 17 46669808 46669808 C T HOXB5 Silent p.G191G 0.13 TCGA-55-7995-01 17 46685423 46685423 G T HOXB7 Silent p.T145T 0.38 TCGA-55-7995-01 17 46688210 46688210 C G HOXB7 Missense_Mutation p.G24A 0.16 tolerated(0.73) possibly_damaging(0.705) TCGA-55-7995-01 17 48629014 48629014 C A SPATA20 Silent p.T573T 0.15 TCGA-55-7995-01 17 51901935 51901935 C T KIF2B Missense_Mutation p.T514I 0.29 deleterious(0) probably_damaging(1) TCGA-55-7995-01 17 55752401 55752401 G T MSI2 Missense_Mutation p.G287C 0.16 deleterious(0) possibly_damaging(0.854) TCGA-55-7995-01 17 56693599 56693599 A T TEX14 Missense_Mutation p.V241E 0.08 deleterious(0) probably_damaging(0.939) TCGA-55-7995-01 17 57643990 57643990 G A DHX40 Missense_Mutation p.E39K 0.13 tolerated(0.45) benign(0.002) TCGA-55-7995-01 17 58556588 58556588 C G APPBP2 Missense_Mutation p.V142L 0.29 deleterious(0.01) benign(0.054) TCGA-55-7995-01 17 60753220 60753220 C G MRC2 Missense_Mutation p.R547G 0.36 deleterious(0.01) possibly_damaging(0.527) TCGA-55-7995-01 17 61988191 61988191 A T CSHL1 Missense_Mutation p.L35H 0.20 deleterious(0) probably_damaging(0.998) TCGA-55-7995-01 17 62968778 62968778 C A AMZ2P1 Intron 0.47 TCGA-55-7995-01 17 65735696 65735696 C G NOL11 Missense_Mutation p.P636R 0.16 tolerated(0.08) probably_damaging(0.998) TCGA-55-7995-01 17 71415418 71415418 C T SDK2 Silent p.T691T 0.50 TCGA-55-7995-01 17 72368385 72368385 G T GPR142 Silent p.R345R 0.43 TCGA-55-7995-01 17 72368472 72368472 C A GPR142 Silent p.V374V 0.13 TCGA-55-7995-01 17 72888698 72888698 G A FADS6 Silent p.L103L 0.28 TCGA-55-7995-01 17 73500776 73500776 T A CASKIN2 Splice_Site p.X398_splice 0.21 TCGA-55-7995-01 17 73945656 73945656 G A ACOX1 Missense_Mutation p.L502F 0.13 deleterious(0.01) possibly_damaging(0.904) TCGA-55-7995-01 17 7578395 7578395 G A TP53 Missense_Mutation p.H179Y 0.46 deleterious(0) probably_damaging(1) TCGA-55-7995-01 17 76501441 76501441 G C DNAH17 Silent p.G1626G 0.10 TCGA-55-7995-01 17 7662881 7662881 C G DNAH2 Missense_Mutation p.Q864E 0.57 benign(0.007) TCGA-55-7995-01 17 76696496 76696496 C A CYTH1 Missense_Mutation p.G156V 0.24 deleterious(0) probably_damaging(0.999) TCGA-55-7995-01 17 77808643 77808643 C T CBX4 Missense_Mutation p.M266I 0.16 deleterious(0.01) benign(0.039) TCGA-55-7995-01 17 7907173 7907173 T G GUCY2D Missense_Mutation p.V242G 0.28 deleterious(0) possibly_damaging(0.82) TCGA-55-7995-01 17 8000008 8000008 C A ALOXE3 Missense_Mutation p.Q823H 0.53 tolerated(0.11) benign(0.033) TCGA-55-7995-01 17 8048231 8048231 C A PER1 Missense_Mutation p.D767Y 0.74 deleterious(0.01) probably_damaging(0.921) TCGA-55-7995-01 17 8049444 8049444 C G PER1 Missense_Mutation p.A684P 0.04 tolerated(0.32) benign(0.004) TCGA-55-7995-01 17 9532088 9532088 G T WDR16 Missense_Mutation p.M375I 0.37 tolerated(0.2) benign(0.001) TCGA-55-7995-01 18 13645561 13645561 C A LDLRAD4 Missense_Mutation p.H276N 0.19 tolerated_low_confidence(0.46) benign(0.097) TCGA-55-7995-01 18 13741556 13741556 C G RNMT Missense_Mutation p.I280M 0.15 deleterious(0.03) possibly_damaging(0.803) TCGA-55-7995-01 18 2890684 2890684 C A EMILIN2 Missense_Mutation p.L187I 0.34 deleterious(0) probably_damaging(0.996) TCGA-55-7995-01 18 347095 347095 C A COLEC12 Missense_Mutation p.G176V 0.24 deleterious(0.01) probably_damaging(0.994) TCGA-55-7995-01 18 40854137 40854137 G A SYT4 Missense_Mutation p.A86V 0.32 tolerated(0.25) benign(0.001) TCGA-55-7995-01 18 44268883 44268883 C A ST8SIA5 Splice_Site p.X104_splice 0.20 TCGA-55-7995-01 18 5890184 5890184 C A TMEM200C 3'UTR 0.12 TCGA-55-7995-01 18 65180317 65180317 T A DSEL Missense_Mutation p.Q520L 0.41 deleterious(0.02) benign(0.331) TCGA-55-7995-01 18 7015747 7015747 C A LAMA1 Missense_Mutation p.G1034C 0.20 deleterious(0) probably_damaging(0.999) TCGA-55-7995-01 19 10602727 10602727 T A KEAP1 Missense_Mutation p.Q284L 0.48 deleterious(0) possibly_damaging(0.692) TCGA-55-7995-01 19 1127757 1127757 G A SBNO2 Missense_Mutation p.S96F 0.53 deleterious_low_confidence(0) benign(0.219) TCGA-55-7995-01 19 12384256 12384256 C T ZNF44 Missense_Mutation p.E320K 0.20 tolerated(0.23) benign(0.173) TCGA-55-7995-01 19 12768896 12768896 G A MAN2B1 Silent p.S430S 0.21 TCGA-55-7995-01 19 12865715 12865715 A G BEST2 Missense_Mutation p.K169R 0.45 tolerated(0.11) benign(0.434) TCGA-55-7995-01 19 15083540 15083540 C A SLC1A6 Silent p.L61L 0.28 TCGA-55-7995-01 19 19336030 19336030 G T NCAN Silent p.R341R 0.36 TCGA-55-7995-01 19 19654130 19654130 C A CILP2 Missense_Mutation p.P351T 0.52 tolerated(0.57) benign(0.424) TCGA-55-7995-01 19 20116845 20116845 G C ZNF682 Missense_Mutation p.A489G 0.28 tolerated(0.05) benign(0.109) TCGA-55-7995-01 19 2078215 2078215 C G MOB3A Silent p.A115A 0.58 TCGA-55-7995-01 19 2515051 2515051 A C GNG7 Missense_Mutation p.F59C 0.26 deleterious(0) probably_damaging(0.998) TCGA-55-7995-01 19 35996847 35996847 G A DMKN Silent p.F360F 0.35 TCGA-55-7995-01 19 36018846 36018846 T C SBSN Missense_Mutation p.E113G 0.15 tolerated(0.05) probably_damaging(0.993) TCGA-55-7995-01 19 3778545 3778545 C A MATK Nonsense_Mutation p.E417* 0.22 TCGA-55-7995-01 19 40030362 40030362 C A EID2 Missense_Mutation p.G120C 0.46 deleterious(0.05) possibly_damaging(0.526) TCGA-55-7995-01 19 4037724 4037724 G A PIAS4 Missense_Mutation p.G462S 0.17 tolerated(0.25) benign(0.007) TCGA-55-7995-01 19 41094612 41094612 A G SHKBP1 Silent p.P473P 0.30 TCGA-55-7995-01 19 4154901 4154901 T G CREB3L3 Silent p.A11A 0.16 TCGA-55-7995-01 19 4207920 4207920 C G ANKRD24 Missense_Mutation p.L263V 0.27 tolerated(0.07) possibly_damaging(0.636) TCGA-55-7995-01 19 42092883 42092883 G T CEACAM21 3'UTR 0.25 TCGA-55-7995-01 19 44047576 44047576 G C XRCC1 Missense_Mutation p.H624D 0.04 deleterious(0.01) probably_damaging(0.966) TCGA-55-7995-01 19 45567405 45567405 A G CLASRP Silent p.A347A 0.19 TCGA-55-7995-01 19 46387494 46387494 G A IRF2BP1 Silent p.T513T 0.46 TCGA-55-7995-01 19 48790036 48790036 G A ZNF114 Silent p.E385E 0.25 TCGA-55-7995-01 19 50764741 50764741 C T MYH14 Silent p.L812L 0.22 TCGA-55-7995-01 19 52147089 52147089 A T SIGLEC14 Missense_Mutation p.C319S 0.48 deleterious(0.01) probably_damaging(0.989) TCGA-55-7995-01 19 52249251 52249251 C A FPR1 Missense_Mutation p.D333Y 0.45 tolerated(0.09) possibly_damaging(0.723) TCGA-55-7995-01 19 53453781 53453781 C T ZNF816 Missense_Mutation p.R416K 0.20 tolerated(0.26) benign(0.008) TCGA-55-7995-01 19 53454094 53454094 G T ZNF816 Missense_Mutation p.P312T 0.13 deleterious(0.02) probably_damaging(0.982) TCGA-55-7995-01 19 53644112 53644112 C G ZNF347 Missense_Mutation p.E658Q 0.24 tolerated(0.06) benign(0.128) TCGA-55-7995-01 19 54783429 54783429 C A LILRB2 Missense_Mutation p.Q143H 0.52 tolerated(0.05) benign(0.129) TCGA-55-7995-01 19 55175809 55175809 C A LILRB4 Missense_Mutation p.H176Q 0.45 deleterious(0.02) benign(0.371) TCGA-55-7995-01 19 55832392 55832392 G - TMEM150B Frame_Shift_Del p.L5Cfs*3 0.28 TCGA-55-7995-01 19 56701188 56701188 C T ZSCAN5B 3'UTR 0.46 TCGA-55-7995-01 19 9064609 9064609 G T MUC16 Missense_Mutation p.L7613M 0.47 unknown(0) TCGA-55-7995-01 19 9069894 9069894 G T MUC16 Missense_Mutation p.P5851H 0.48 unknown(0) TCGA-55-7995-01 1 110255844 110255844 G T GSTM5 Intron 0.40 TCGA-55-7995-01 1 114193825 114193825 G A MAGI3 Missense_Mutation p.G813R 0.34 tolerated(0.2) benign(0.007) TCGA-55-7995-01 1 117142849 117142849 T A IGSF3 Silent p.T601T 0.30 TCGA-55-7995-01 1 12066593 12066593 A G MFN2 Splice_Site p.X573_splice 0.25 TCGA-55-7995-01 1 1328141 1328141 A G CCNL2 Intron 0.11 TCGA-55-7995-01 1 13695944 13695944 G A PRAMEF19 Nonsense_Mutation p.R341* 0.07 TCGA-55-7995-01 1 148574739 148574739 G T NBPF15 Intron 0.19 TCGA-55-7995-01 1 148932909 148932909 C A RP11-14N7.2 RNA 0.04 TCGA-55-7995-01 1 150784487 150784487 C A ARNT 3'UTR 0.20 TCGA-55-7995-01 1 152081864 152081864 G T TCHH Silent p.R1277R 0.32 TCGA-55-7995-01 1 152190824 152190824 G T HRNR Missense_Mutation p.A1094D 0.19 unknown(0) TCGA-55-7995-01 1 152277576 152277576 G T FLG Silent p.A3262A 0.42 TCGA-55-7995-01 1 152282791 152282791 G T FLG Missense_Mutation p.P1524H 0.37 possibly_damaging(0.893) TCGA-55-7995-01 1 152284263 152284263 G T FLG Missense_Mutation p.H1033Q 0.18 probably_damaging(0.994) TCGA-55-7995-01 1 152284352 152284352 G T FLG Missense_Mutation p.Q1004K 0.33 benign(0.056) TCGA-55-7995-01 1 152323623 152323623 G A FLG2 Silent p.S2213S 0.39 TCGA-55-7995-01 1 156917216 156917216 G A ARHGEF11 Silent p.L790L 0.46 TCGA-55-7995-01 1 158735990 158735990 G C OR6N1 Silent p.S161S 0.23 TCGA-55-7995-01 1 158813842 158813842 C A MNDA Missense_Mutation p.S167Y 0.17 deleterious(0.03) benign(0.17) TCGA-55-7995-01 1 159410036 159410036 G T OR10J1 Missense_Mutation p.G163V 0.37 deleterious(0) probably_damaging(0.999) TCGA-55-7995-01 1 160105017 160105017 A T ATP1A2 Missense_Mutation p.T683S 0.17 tolerated(0.55) benign(0.017) TCGA-55-7995-01 1 160147389 160147389 G T ATP1A4 Missense_Mutation p.G891C 0.16 deleterious(0) probably_damaging(0.946) TCGA-55-7995-01 1 161049711 161049711 G T PVRL4 Silent p.T36T 0.24 TCGA-55-7995-01 1 163044232 163044232 G C RGS4 Missense_Mutation p.R264P 0.42 deleterious(0) probably_damaging(0.999) TCGA-55-7995-01 1 16529014 16529014 C A ARHGEF19 Missense_Mutation p.D655Y 0.29 deleterious(0) possibly_damaging(0.886) TCGA-55-7995-01 1 169483494 169483494 T C F5 3'UTR 0.24 TCGA-55-7995-01 1 171165862 171165862 C A FMO2 Missense_Mutation p.N132K 0.30 tolerated(0.11) benign(0.007) TCGA-55-7995-01 1 172635070 172635070 G T FASLG Missense_Mutation p.A254S 0.36 tolerated(0.74) benign(0.068) TCGA-55-7995-01 1 173772582 173772582 C A CENPL Missense_Mutation p.W207L 0.16 deleterious(0.01) benign(0.057) TCGA-55-7995-01 1 175355187 175355187 G T TNR Silent p.A586A 0.30 TCGA-55-7995-01 1 176668420 176668420 C G PAPPA2 Silent p.S977S 0.18 TCGA-55-7995-01 1 176668532 176668532 G T PAPPA2 Missense_Mutation p.G1015W 0.40 deleterious(0.03) benign(0.033) TCGA-55-7995-01 1 179320525 179320526 - T SOAT1 Frame_Shift_Ins p.L509Ffs*54 0.13 TCGA-55-7995-01 1 179965938 179965938 G A CEP350 Missense_Mutation p.G216R 0.18 benign(0.418) TCGA-55-7995-01 1 181548222 181548222 T C CACNA1E Silent p.L211L 0.17 TCGA-55-7995-01 1 192129569 192129569 G T RGS18 Missense_Mutation p.D95Y 0.39 tolerated(0.16) probably_damaging(0.985) TCGA-55-7995-01 1 196762642 196762642 A T CFHR3 Nonstop_Mutation p.*331Lext*44 0.35 TCGA-55-7995-01 1 197390133 197390133 T A CRB1 Missense_Mutation p.I392N 0.24 deleterious(0.04) possibly_damaging(0.648) TCGA-55-7995-01 1 197396586 197396586 T A CRB1 Missense_Mutation p.Y711N 0.40 deleterious(0) possibly_damaging(0.878) TCGA-55-7995-01 1 201355563 201355563 C A LAD1 Missense_Mutation p.R309I 0.19 deleterious(0.02) benign(0.126) TCGA-55-7995-01 1 203743355 203743355 G C LAX1 Missense_Mutation p.G248A 0.11 tolerated(0.08) benign(0.016) TCGA-55-7995-01 1 206647748 206647748 G A IKBKE Silent p.R54R 0.38 TCGA-55-7995-01 1 209969722 209969722 G A IRF6 Missense_Mutation p.P117L 0.33 deleterious(0.03) possibly_damaging(0.642) TCGA-55-7995-01 1 209969723 209969723 G A IRF6 Missense_Mutation p.P117S 0.33 tolerated(0.09) benign(0.063) TCGA-55-7995-01 1 210857227 210857227 G T KCNH1 Missense_Mutation p.T789N 0.16 tolerated_low_confidence(0.13) benign(0.027) TCGA-55-7995-01 1 214171004 214171004 T G PROX1 Missense_Mutation p.S376A 0.15 tolerated(0.81) benign(0.003) TCGA-55-7995-01 1 214171198 214171198 C A PROX1 Silent p.P440P 0.18 TCGA-55-7995-01 1 216262382 216262382 G A USH2A Nonsense_Mutation p.Q1620* 0.35 TCGA-55-7995-01 1 220091885 220091885 C T SLC30A10 Intron 0.20 TCGA-55-7995-01 1 22157544 22157544 C A HSPG2 Missense_Mutation p.V3868L 0.25 benign(0.015) TCGA-55-7995-01 1 224922277 224922277 T C CNIH3 Silent p.C108C 0.16 TCGA-55-7995-01 1 226924519 226924519 C G ITPKB Missense_Mutation p.G214A 0.22 tolerated_low_confidence(0.26) benign(0.002) TCGA-55-7995-01 1 227947114 227947114 G C SNAP47 Missense_Mutation p.E351Q 0.18 tolerated(0.07) benign(0.184) TCGA-55-7995-01 1 229666123 229666123 C A ABCB10 Missense_Mutation p.G490C 0.37 deleterious(0) probably_damaging(0.999) TCGA-55-7995-01 1 234599592 234599592 C T TARBP1 Missense_Mutation p.E464K 0.35 deleterious(0.05) benign(0.037) TCGA-55-7995-01 1 235967931 235967931 C A LYST Missense_Mutation p.R1143M 0.32 deleterious(0) possibly_damaging(0.786) TCGA-55-7995-01 1 237617792 237617792 C G RYR2 Missense_Mutation p.P465R 0.31 possibly_damaging(0.806) TCGA-55-7995-01 1 237895389 237895389 G A RYR2 Missense_Mutation p.R3660K 0.13 benign(0.003) TCGA-55-7995-01 1 237955546 237955546 G C RYR2 Missense_Mutation p.E4569Q 0.31 probably_damaging(0.929) TCGA-55-7995-01 1 23848504 23848504 C A E2F2 Missense_Mutation p.G135W 0.24 deleterious(0) probably_damaging(1) TCGA-55-7995-01 1 24401865 24401865 T C MYOM3 Silent p.K934K 0.21 TCGA-55-7995-01 1 247769670 247769670 A G OR2G3 Silent p.Q261Q 0.13 TCGA-55-7995-01 1 248028108 248028108 G A TRIM58 Silent p.A206A 0.17 TCGA-55-7995-01 1 248343773 248343773 C A OR2M2 Silent p.A162A 0.32 TCGA-55-7995-01 1 248367020 248367020 C A OR2M3 Silent p.S217S 0.34 TCGA-55-7995-01 1 248457966 248457966 C A OR2T12 Silent p.T305T 0.16 TCGA-55-7995-01 1 248569820 248569820 C A OR2T1 Silent p.A175A 0.22 TCGA-55-7995-01 1 248737770 248737770 T C OR2T34 Missense_Mutation p.I97V 0.28 deleterious(0.01) benign(0.152) TCGA-55-7995-01 1 29609187 29609187 G T PTPRU Splice_Site p.X623_splice 0.23 TCGA-55-7995-01 1 34090198 34090198 G T CSMD2 Missense_Mutation p.S1809Y 0.14 deleterious(0) probably_damaging(0.992) TCGA-55-7995-01 1 3409263 3409263 C G MEGF6 Missense_Mutation p.D1486H 0.17 tolerated(0.06) possibly_damaging(0.904) TCGA-55-7995-01 1 34383835 34383835 C A CSMD2 Silent p.S220S 0.24 TCGA-55-7995-01 1 35365313 35365313 C A DLGAP3 Missense_Mutation p.R448L 0.27 deleterious(0.02) benign(0.018) TCGA-55-7995-01 1 36605384 36605384 G A TRAPPC3 Silent p.F59F 0.19 TCGA-55-7995-01 1 41485895 41485895 T G SLFNL1 Intron 0.15 TCGA-55-7995-01 1 43218019 43218019 C T LEPRE1 Missense_Mutation p.G499S 0.24 deleterious(0.01) possibly_damaging(0.868) TCGA-55-7995-01 1 46739419 46739419 G A RAD54L Missense_Mutation p.R537K 0.38 tolerated(0.77) benign(0.018) TCGA-55-7995-01 1 46976683 46976683 A G DMBX1 Missense_Mutation p.K137R 0.16 tolerated(0.07) probably_damaging(0.998) TCGA-55-7995-01 1 47348682 47348682 C T CYP4Z2P RNA 0.29 TCGA-55-7995-01 1 48865227 48865227 C T SPATA6 Silent p.K192K 0.16 TCGA-55-7995-01 1 53262031 53262031 G T ZYG11B Missense_Mutation p.A468S 0.21 tolerated(0.22) benign(0.005) TCGA-55-7995-01 1 53678942 53678942 G A CPT2 Missense_Mutation p.G551D 0.36 deleterious(0) probably_damaging(0.999) TCGA-55-7995-01 1 60476125 60476125 C A C1orf87 Missense_Mutation p.W377C 0.27 deleterious(0) probably_damaging(0.971) TCGA-55-7995-01 1 67340507 67340507 T A WDR78 Missense_Mutation p.T253S 0.22 tolerated(0.67) benign(0.013) TCGA-55-7995-01 1 70504324 70504324 C A LRRC7 Silent p.P901P 0.26 TCGA-55-7995-01 1 70504819 70504819 C G LRRC7 Missense_Mutation p.I1066M 0.31 tolerated(0.12) benign(0.005) TCGA-55-7995-01 1 70541799 70541799 C A LRRC7 Missense_Mutation p.L1386I 0.27 tolerated(0.4) possibly_damaging(0.815) TCGA-55-7995-01 1 70820829 70820829 T C HHLA3 Intron 0.11 TCGA-55-7995-01 1 75038141 75038141 C G C1orf173 Missense_Mutation p.A1085P 0.19 deleterious(0.03) possibly_damaging(0.663) TCGA-55-7995-01 1 75172830 75172830 A C CRYZ Missense_Mutation p.L230R 0.24 deleterious(0) probably_damaging(1) TCGA-55-7995-01 1 7725205 7725205 G C CAMTA1 Missense_Mutation p.Q866H 0.23 tolerated(0.05) benign(0.309) TCGA-55-7995-01 1 79357285 79357285 G T ELTD1 Missense_Mutation p.T645K 0.40 deleterious(0.01) probably_damaging(1) TCGA-55-7995-01 1 86048253 86048253 A T CYR61 Missense_Mutation p.E263D 0.28 deleterious(0.01) probably_damaging(0.985) TCGA-55-7995-01 1 87036767 87036767 G C CLCA4 Missense_Mutation p.G397A 0.14 tolerated(0.31) benign(0.021) TCGA-55-7995-01 1 94643704 94643704 C A ARHGAP29 Nonsense_Mutation p.E834* 0.28 TCGA-55-7995-01 20 1460651 1460651 G T SIRPB2 Missense_Mutation p.L49M 0.35 tolerated(0.11) probably_damaging(0.987) TCGA-55-7995-01 20 1617131 1617131 C A SIRPG Missense_Mutation p.V151L 0.29 deleterious(0.05) benign(0.05) TCGA-55-7995-01 20 1630034 1630034 G C SIRPG Missense_Mutation p.L32V 0.29 deleterious(0.02) possibly_damaging(0.716) TCGA-55-7995-01 20 17475195 17475195 C A BFSP1 Missense_Mutation p.G508C 0.31 deleterious(0.01) possibly_damaging(0.871) TCGA-55-7995-01 20 20033150 20033150 G T CRNKL1 Missense_Mutation p.S107Y 0.30 tolerated_low_confidence(0.05) benign(0) TCGA-55-7995-01 20 23016520 23016520 G A SSTR4 Missense_Mutation p.V134I 0.22 tolerated(1) benign(0.386) TCGA-55-7995-01 20 23966561 23966561 C T GGTLC1 Missense_Mutation p.G119S 0.14 tolerated(0.07) benign(0.327) TCGA-55-7995-01 20 29623168 29623168 G T FRG1B 5'UTR 0.02 TCGA-55-7995-01 20 31573551 31573551 G A SUN5 Silent p.F296F 0.12 TCGA-55-7995-01 20 3171440 3171440 G T DDRGK1 Missense_Mutation p.F268L 0.14 deleterious(0) probably_damaging(0.996) TCGA-55-7995-01 20 31768382 31768382 A G BPIFA2 3'UTR 0.32 TCGA-55-7995-01 20 33874835 33874835 T A FAM83C Missense_Mutation p.R583W 0.24 deleterious_low_confidence(0) possibly_damaging(0.892) TCGA-55-7995-01 20 40033728 40033728 C A CHD6 Silent p.P2551P 0.32 TCGA-55-7995-01 20 4202090 4202090 G T ADRA1D 3'UTR 0.30 TCGA-55-7995-01 20 42203600 42203600 T C SGK2 Missense_Mutation p.W277R 0.24 deleterious(0) probably_damaging(0.999) TCGA-55-7995-01 20 43752495 43752508 GAGGACACCTGGTA - WFDC12 Frame_Shift_Del p.T106Efs*20 0.31 TCGA-55-7995-01 20 44258438 44258438 G A WFDC10A 5'UTR 0.49 TCGA-55-7995-01 20 47592590 47592590 G T ARFGEF2 Silent p.G604G 0.12 TCGA-55-7995-01 20 49446832 49446832 C T BCAS4 Missense_Mutation p.S90L 0.26 deleterious(0.03) probably_damaging(0.977) TCGA-55-7995-01 20 49509542 49509542 T C ADNP Missense_Mutation p.N570S 0.16 tolerated(0.38) probably_damaging(0.985) TCGA-55-7995-01 20 54823837 54823837 A T MC3R 5'UTR 0.35 TCGA-55-7995-01 20 6022417 6022417 G A LRRN4 Missense_Mutation p.R492C 0.33 tolerated(0.05) benign(0.255) TCGA-55-7995-01 20 61444381 61444381 G T OGFR Missense_Mutation p.A472S 0.33 tolerated(0.21) benign(0.019) TCGA-55-7995-01 20 8717711 8717711 G T PLCB1 Missense_Mutation p.G694W 0.22 deleterious(0) probably_damaging(0.999) TCGA-55-7995-01 21 33064723 33064723 C G SCAF4 Missense_Mutation p.R518T 0.04 possibly_damaging(0.855) TCGA-55-7995-01 21 34861591 34861591 T C DNAJC28 Missense_Mutation p.N37S 0.54 tolerated(0.64) benign(0.001) TCGA-55-7995-01 21 45994526 45994526 C G KRTAP10-4 Missense_Mutation p.C297W 0.33 deleterious(0) unknown(0) TCGA-55-7995-01 21 46624488 46624488 C T ADARB1 Silent p.I568I 0.03 TCGA-55-7995-01 22 16287375 16287375 G C POTEH Missense_Mutation p.H171D 0.15 tolerated(0.06) benign(0.317) TCGA-55-7995-01 22 17288868 17288868 G C XKR3 Missense_Mutation p.S32R 0.33 tolerated(1) benign(0) TCGA-55-7995-01 22 19343313 19343313 G A HIRA Missense_Mutation p.A844V 0.42 deleterious(0.01) possibly_damaging(0.636) TCGA-55-7995-01 22 22869491 22869491 C A ZNF280A Missense_Mutation p.G155V 0.24 tolerated(1) benign(0.007) TCGA-55-7995-01 22 24452752 24452752 C A CABIN1 Silent p.V397V 0.14 TCGA-55-7995-01 22 26219624 26219624 G C MYO18B Missense_Mutation p.E892Q 0.20 tolerated(0.31) benign(0.088) TCGA-55-7995-01 22 29650277 29650277 G T EMID1 Splice_Site p.X402_splice 0.28 TCGA-55-7995-01 22 30186459 30186459 C A ASCC2 Missense_Mutation p.G701W 0.24 deleterious(0) probably_damaging(0.998) TCGA-55-7995-01 22 30200706 30200706 C T ASCC2 Missense_Mutation p.G425E 0.42 tolerated(0.31) benign(0.002) TCGA-55-7995-01 22 32756763 32756763 C T RFPL3S Missense_Mutation p.G92E 0.21 probably_damaging(0.97) TCGA-55-7995-01 22 37707028 37707028 G T CYTH4 Splice_Site p.X270_splice 0.28 TCGA-55-7995-01 22 38121097 38121097 G T TRIOBP Missense_Mutation p.R845I 0.24 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-55-7995-01 22 41077314 41077314 C A MCHR1 Silent p.P217P 0.23 TCGA-55-7995-01 22 41752779 41752779 G T ZC3H7B Missense_Mutation p.R883L 0.16 deleterious(0) probably_damaging(1) TCGA-55-7995-01 22 42385649 42385649 C A SEPT3 Missense_Mutation p.D210E 0.31 deleterious(0) probably_damaging(0.992) TCGA-55-7995-01 22 45279172 45279172 A G PHF21B Silent p.L464L 0.09 TCGA-55-7995-01 22 50437721 50437721 G T IL17REL Missense_Mutation p.N200K 0.34 deleterious(0) benign(0.116) TCGA-55-7995-01 2 101881338 101881338 G T CNOT11 Silent p.P288P 0.36 TCGA-55-7995-01 2 10192405 10192405 G T KLF11 Missense_Mutation p.R437L 0.59 deleterious(0) probably_damaging(1) TCGA-55-7995-01 2 105473057 105473057 C T POU3F3 Silent p.F363F 0.22 TCGA-55-7995-01 2 110962573 110962573 C A NPHP1 5'UTR 0.24 TCGA-55-7995-01 2 114503855 114503855 A C SLC35F5 Missense_Mutation p.L160W 0.39 deleterious(0) probably_damaging(0.997) TCGA-55-7995-01 2 122363364 122363364 C A CLASP1 Missense_Mutation p.K36N 0.56 tolerated(0.51) possibly_damaging(0.65) TCGA-55-7995-01 2 12863556 12863556 G C TRIB2 Silent p.L147L 0.58 TCGA-55-7995-01 2 130911408 130911408 C A SMPD4 Missense_Mutation p.W626L 0.35 tolerated(0.22) probably_damaging(0.954) TCGA-55-7995-01 2 135710914 135710914 A G CCNT2 Missense_Mutation p.T297A 0.20 tolerated(0.62) benign(0.001) TCGA-55-7995-01 2 136570436 136570436 C A LCT Missense_Mutation p.V600L 0.47 tolerated(0.06) possibly_damaging(0.719) TCGA-55-7995-01 2 138320897 138320897 G T THSD7B Missense_Mutation p.G1085V 0.38 deleterious(0) unknown(0) TCGA-55-7995-01 2 138320915 138320915 G T THSD7B Missense_Mutation p.R1091M 0.38 deleterious(0) unknown(0) TCGA-55-7995-01 2 141283413 141283413 C A LRP1B Missense_Mutation p.V2676F 0.20 benign(0.403) TCGA-55-7995-01 2 141356359 141356359 C G LRP1B Missense_Mutation p.M2345I 0.27 benign(0.072) TCGA-55-7995-01 2 143742735 143742735 G C KYNU Missense_Mutation p.C271S 0.12 deleterious(0) possibly_damaging(0.782) TCGA-55-7995-01 2 149226011 149226011 C T MBD5 Missense_Mutation p.P167S 0.13 deleterious(0) possibly_damaging(0.803) TCGA-55-7995-01 2 149267633 149267633 G A MBD5 Missense_Mutation p.G1448R 0.21 tolerated(0.31) unknown(0) TCGA-55-7995-01 2 157352553 157352553 C T GPD2 Intron 0.10 TCGA-55-7995-01 2 158115335 158115335 G A GALNT5 Silent p.P247P 0.18 TCGA-55-7995-01 2 160636545 160636545 G A LY75-CD302 Missense_Mutation p.S1788F 0.18 deleterious(0.04) benign(0.045) TCGA-55-7995-01 2 160692092 160692092 T G LY75-CD302 Missense_Mutation p.N1191T 0.18 tolerated(0.22) probably_damaging(0.969) TCGA-55-7995-01 2 165969401 165969401 G C SCN3A Missense_Mutation p.I1279M 0.10 deleterious(0) probably_damaging(0.994) TCGA-55-7995-01 2 167760266 167760266 C T XIRP2 Missense_Mutation p.R92W 0.16 benign(0.004) TCGA-55-7995-01 2 179463631 179463631 G T TTN Silent p.R18936R 0.17 TCGA-55-7995-01 2 179467077 179467077 G T TTN Missense_Mutation p.A18351D 0.18 TCGA-55-7995-01 2 179501451 179501451 G T TTN Missense_Mutation p.P13668H 0.38 TCGA-55-7995-01 2 179501452 179501452 G T TTN Missense_Mutation p.P13668T 0.39 TCGA-55-7995-01 2 179596985 179596985 G T TTN Missense_Mutation p.P5571T 0.16 TCGA-55-7995-01 2 182376466 182376466 C T ITGA4 Missense_Mutation p.A629V 0.17 deleterious(0) probably_damaging(1) TCGA-55-7995-01 2 183597246 183597246 C G DNAJC10 Missense_Mutation p.R276G 0.11 deleterious(0.03) possibly_damaging(0.605) TCGA-55-7995-01 2 183730974 183730974 C A FRZB Nonsense_Mutation p.E103* 0.16 TCGA-55-7995-01 2 187702085 187702085 C A ZSWIM2 Missense_Mutation p.G231W 0.41 deleterious(0) probably_damaging(1) TCGA-55-7995-01 2 190334847 190334848 - G WDR75 Frame_Shift_Ins p.I624Yfs*18 0.18 TCGA-55-7995-01 2 191845379 191845379 G C STAT1 Silent p.P533P 0.17 TCGA-55-7995-01 2 198570108 198570108 C A MARS2 5'UTR 0.30 TCGA-55-7995-01 2 198948701 198948701 G C PLCL1 Missense_Mutation p.E154Q 0.15 tolerated(0.05) benign(0.334) TCGA-55-7995-01 2 198950735 198950735 G C PLCL1 Missense_Mutation p.V832L 0.14 tolerated(0.09) benign(0.065) TCGA-55-7995-01 2 207176298 207176298 G A ZDBF2 Missense_Mutation p.R2349K 0.11 tolerated(0.13) benign(0.067) TCGA-55-7995-01 2 21228906 21228906 C T APOB Missense_Mutation p.D3612N 0.23 benign(0.027) TCGA-55-7995-01 2 215838681 215838681 T A ABCA12 Missense_Mutation p.N1852Y 0.15 deleterious(0.03) benign(0.328) TCGA-55-7995-01 2 219000217 219000217 C A CXCR2 Nonsense_Mutation p.Y231* 0.35 TCGA-55-7995-01 2 219000221 219000221 T A CXCR2 Missense_Mutation p.F233I 0.36 tolerated(0.15) benign(0.083) TCGA-55-7995-01 2 219296825 219296825 C T VIL1 Silent p.H420H 0.21 TCGA-55-7995-01 2 220500457 220500457 G T SLC4A3 Missense_Mutation p.G706C 0.15 deleterious(0) probably_damaging(0.999) TCGA-55-7995-01 2 224463277 224463277 C A SCG2 Nonsense_Mutation p.E242* 0.35 TCGA-55-7995-01 2 224743393 224743393 G A WDFY1 Missense_Mutation p.H410Y 0.23 deleterious_low_confidence(0) possibly_damaging(0.727) TCGA-55-7995-01 2 230911224 230911224 C T SLC16A14 Silent p.G206G 0.17 TCGA-55-7995-01 2 231177403 231177403 G T SP140 3'UTR 0.14 TCGA-55-7995-01 2 233244378 233244378 G A ALPP Missense_Mutation p.M155I 0.10 deleterious(0.04) benign(0.153) TCGA-55-7995-01 2 233244379 233244379 A T ALPP Missense_Mutation p.N156Y 0.10 tolerated(0.4) benign(0.016) TCGA-55-7995-01 2 238280951 238280951 G A COL6A3 Missense_Mutation p.L1237F 0.11 probably_damaging(0.998) TCGA-55-7995-01 2 238283182 238283182 A G COL6A3 Silent p.F1184F 0.51 TCGA-55-7995-01 2 242741370 242741370 C T GAL3ST2 Silent p.F98F 0.40 TCGA-55-7995-01 2 27360736 27360736 G T C2orf53 Missense_Mutation p.S154R 0.63 tolerated(0.05) benign(0.004) TCGA-55-7995-01 2 29543724 29543724 C T ALK Missense_Mutation p.C480Y 0.61 deleterious(0) probably_damaging(0.999) TCGA-55-7995-01 2 32673888 32673888 G T BIRC6 Missense_Mutation p.D1504Y 0.33 probably_damaging(0.997) TCGA-55-7995-01 2 32693083 32693083 A T BIRC6 Missense_Mutation p.H1895L 0.63 benign(0.105) TCGA-55-7995-01 2 73717676 73717676 G C ALMS1 Missense_Mutation p.G2863R 0.61 probably_damaging(0.963) TCGA-55-7995-01 2 74749770 74749770 G T DQX1 Missense_Mutation p.L478M 0.63 deleterious(0) probably_damaging(0.998) TCGA-55-7995-01 2 75426109 75426109 G T TACR1 5'UTR 0.65 TCGA-55-7995-01 2 88472662 88472662 C G THNSL2 5'UTR 0.25 TCGA-55-7995-01 2 89476041 89476041 C A IGKV2-24 Missense_Mutation p.R44M 0.53 deleterious(0) possibly_damaging(0.824) TCGA-55-7995-01 3 108407534 108407534 G A DZIP3 Missense_Mutation p.R1122K 0.49 tolerated(0.24) benign(0.001) TCGA-55-7995-01 3 112255419 112255419 A C ATG3 Missense_Mutation p.Y233D 0.13 deleterious(0.01) possibly_damaging(0.904) TCGA-55-7995-01 3 113152505 113152505 C A WDR52 Nonsense_Mutation p.E3* 0.41 TCGA-55-7995-01 3 113212946 113212946 G C SPICE1 Missense_Mutation p.S112C 0.19 deleterious(0) probably_damaging(1) TCGA-55-7995-01 3 119087273 119087273 G T ARHGAP31 Missense_Mutation p.Q86H 0.14 deleterious(0) probably_damaging(0.996) TCGA-55-7995-01 3 119120937 119120937 A T ARHGAP31 Silent p.T446T 0.55 TCGA-55-7995-01 3 119306579 119306579 G C ADPRH Missense_Mutation p.A310P 0.35 deleterious(0) probably_damaging(0.999) TCGA-55-7995-01 3 119325778 119325778 G T PLA1A Silent p.G77G 0.11 TCGA-55-7995-01 3 119325793 119325793 G T PLA1A Silent p.L82L 0.60 TCGA-55-7995-01 3 119373369 119373369 C A POPDC2 Nonsense_Mutation p.E195* 0.51 TCGA-55-7995-01 3 119451232 119451232 G A MAATS1 Silent p.Q370Q 0.58 TCGA-55-7995-01 3 120469792 120469792 C G GTF2E1 Silent p.V131V 0.03 TCGA-55-7995-01 3 120499951 120499951 C A GTF2E1 Missense_Mutation p.N318K 0.10 deleterious(0.04) possibly_damaging(0.868) TCGA-55-7995-01 3 122629685 122629685 A G SEMA5B Splice_Site p.X1153_splice 0.52 TCGA-55-7995-01 3 123419499 123419499 G C MYLK Missense_Mutation p.S939C 0.13 tolerated(0.05) probably_damaging(0.969) TCGA-55-7995-01 3 124237340 124237340 A C KALRN 3'UTR 0.58 TCGA-55-7995-01 3 132233471 132233471 G T DNAJC13 Missense_Mutation p.M1814I 0.11 tolerated(0.17) benign(0) TCGA-55-7995-01 3 133368658 133368658 C T TOPBP1 Missense_Mutation p.E407K 0.14 tolerated(0.09) benign(0.111) TCGA-55-7995-01 3 136170877 136170877 C T STAG1 Missense_Mutation p.E476K 0.12 deleterious(0.01) benign(0.338) TCGA-55-7995-01 3 142539866 142539866 G T PCOLCE2 Missense_Mutation p.T324K 0.12 deleterious(0.04) possibly_damaging(0.493) TCGA-55-7995-01 3 15298613 15298613 C T SH3BP5 Silent p.S299S 0.33 TCGA-55-7995-01 3 154147309 154147309 C A GPR149 Silent p.L32L 0.66 TCGA-55-7995-01 3 154860025 154860025 G A MME Splice_Site p.X365_splice 0.21 TCGA-55-7995-01 3 160149569 160149569 G A SMC4 Missense_Mutation p.E1085K 0.08 tolerated(0.29) benign(0.007) TCGA-55-7995-01 3 170723754 170723754 A G SLC2A2 Silent p.D251D 0.54 TCGA-55-7995-01 3 173322699 173322699 G T NLGN1 Missense_Mutation p.W104L 0.08 deleterious(0) probably_damaging(0.988) TCGA-55-7995-01 3 178916863 178916863 G C PIK3CA Missense_Mutation p.D84H 0.15 deleterious(0) probably_damaging(1) TCGA-55-7995-01 3 184098578 184098578 G C CHRD Missense_Mutation p.E83Q 0.21 deleterious(0.04) probably_damaging(1) TCGA-55-7995-01 3 186974548 186974548 G T MASP1 Silent p.I216I 0.14 TCGA-55-7995-01 3 191861764 191861764 G C FGF12 3'UTR 0.62 TCGA-55-7995-01 3 194080633 194080633 G C LRRC15 Silent p.L386L 0.55 TCGA-55-7995-01 3 194158090 194158090 T C ATP13A3 Missense_Mutation p.Y650C 0.14 deleterious(0) possibly_damaging(0.666) TCGA-55-7995-01 3 197585750 197585750 C T LRCH3 Missense_Mutation p.H564Y 0.12 tolerated(0.45) benign(0.273) TCGA-55-7995-01 3 32188176 32188176 A G GPD1L Missense_Mutation p.I190V 0.34 tolerated(1) benign(0.005) TCGA-55-7995-01 3 32860366 32860366 T A TRIM71 Missense_Mutation p.F265Y 0.51 tolerated(0.58) benign(0) TCGA-55-7995-01 3 33867986 33867986 G T PDCD6IP Missense_Mutation p.A211S 0.38 tolerated(0.2) benign(0.079) TCGA-55-7995-01 3 38945532 38945532 C A SCN11A Missense_Mutation p.V556L 0.27 deleterious(0) benign(0.077) TCGA-55-7995-01 3 4695551 4695551 G T ITPR1 Intron 0.20 TCGA-55-7995-01 3 51969221 51969221 C T RRP9 Silent p.A342A 0.26 TCGA-55-7995-01 3 78717033 78717033 C A ROBO1 Missense_Mutation p.D656Y 0.24 deleterious(0) probably_damaging(0.996) TCGA-55-7995-01 3 97467452 97467452 C T EPHA6 Silent p.V1100V 0.47 TCGA-55-7995-01 3 97605561 97605561 G C CRYBG3 Missense_Mutation p.L465F 0.18 deleterious(0.02) probably_damaging(0.933) TCGA-55-7995-01 3 98002357 98002357 G T OR5H2 Missense_Mutation p.G209V 0.47 tolerated(0.12) possibly_damaging(0.678) TCGA-55-7995-01 4 101439140 101439140 G T EMCN 5'UTR 0.38 TCGA-55-7995-01 4 104027392 104027392 C A CENPE Missense_Mutation p.C2698F 0.21 probably_damaging(0.998) TCGA-55-7995-01 4 104070553 104070553 G A CENPE Nonsense_Mutation p.Q1137* 0.32 TCGA-55-7995-01 4 110384209 110384209 A G SEC24B Missense_Mutation p.T96A 0.27 tolerated_low_confidence(0.23) benign(0.002) TCGA-55-7995-01 4 113352887 113352887 G T ALPK1 Missense_Mutation p.R728S 0.22 tolerated(0.9) benign(0.008) TCGA-55-7995-01 4 114179230 114179230 G T ANK2 Missense_Mutation p.A405S 0.22 probably_damaging(0.996) TCGA-55-7995-01 4 114277345 114277345 A T ANK2 Missense_Mutation p.Q2524L 0.17 probably_damaging(0.999) TCGA-55-7995-01 4 114473230 114473230 C T CAMK2D Missense_Mutation p.E100K 0.04 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-55-7995-01 4 122607505 122607505 T A ANXA5 Missense_Mutation p.D11V 0.21 tolerated(0.13) benign(0.038) TCGA-55-7995-01 4 145032489 145032489 G C GYPA 3'UTR 0.19 TCGA-55-7995-01 4 153249457 153249457 G A FBXW7 Missense_Mutation p.R441W 0.19 deleterious(0) probably_damaging(1) TCGA-55-7995-01 4 155490788 155490788 G C FGB Missense_Mutation p.V361L 0.33 tolerated(0.09) benign(0.018) TCGA-55-7995-01 4 164393763 164393763 C T TKTL2 Missense_Mutation p.S375N 0.26 tolerated(0.16) benign(0.053) TCGA-55-7995-01 4 170498202 170498202 C G NEK1 Silent p.S299S 0.10 TCGA-55-7995-01 4 170913338 170913338 G C MFAP3L Missense_Mutation p.R141G 0.15 deleterious(0) probably_damaging(0.995) TCGA-55-7995-01 4 176561343 176561343 C T GPM6A Silent p.L207L 0.16 TCGA-55-7995-01 4 186320739 186320739 C A ANKRD37 Missense_Mutation p.N96K 0.24 deleterious(0.03) possibly_damaging(0.609) TCGA-55-7995-01 4 187179388 187179388 A G KLKB1 3'UTR 0.36 TCGA-55-7995-01 4 38776542 38776542 C A TLR10 Missense_Mutation p.G224C 0.29 tolerated(0.09) benign(0.011) TCGA-55-7995-01 4 44638088 44638088 T C YIPF7 Missense_Mutation p.E68G 0.38 tolerated(0.21) benign(0.004) TCGA-55-7995-01 4 44638089 44638089 C T YIPF7 Missense_Mutation p.E68K 0.39 tolerated(0.28) benign(0.004) TCGA-55-7995-01 4 47548762 47548763 TG A ATP10D Frame_Shift_Del p.N506Kfs*19 0.09 TCGA-55-7995-01 4 56877595 56877595 G T CEP135 Missense_Mutation p.L841F 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-55-7995-01 4 57181564 57181564 C G KIAA1211 Silent p.A632A 0.19 TCGA-55-7995-01 4 59419 59419 T C ZNF595 Silent p.L34L 0.17 TCGA-55-7995-01 4 62910258 62910258 C A LPHN3 Missense_Mutation p.L1201I 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-55-7995-01 4 6380191 6380191 T A PPP2R2C Missense_Mutation p.N93Y 0.40 deleterious(0) probably_damaging(1) TCGA-55-7995-01 4 68379793 68379793 C G CENPC Silent p.V481V 0.21 TCGA-55-7995-01 4 68447088 68447088 G T STAP1 Missense_Mutation p.E143D 0.38 tolerated(0.09) benign(0.023) TCGA-55-7995-01 4 70078342 70078342 G C UGT2B11 Missense_Mutation p.N273K 0.14 deleterious(0) probably_damaging(0.91) TCGA-55-7995-01 4 71346549 71346549 C A MUC7 Missense_Mutation p.R30S 0.17 tolerated(0.25) benign(0.164) TCGA-55-7995-01 4 71888189 71888189 A T DCK Missense_Mutation p.I105L 0.19 tolerated(1) benign(0.215) TCGA-55-7995-01 4 88964600 88964600 G T PKD2 Missense_Mutation p.C437F 0.14 deleterious(0) probably_damaging(0.993) TCGA-55-7995-01 4 90857017 90857017 A G MMRN1 Missense_Mutation p.N729S 0.28 deleterious(0) probably_damaging(0.997) TCGA-55-7995-01 4 94031948 94031948 G T GRID2 Missense_Mutation p.M193I 0.33 tolerated(0.21) benign(0.105) TCGA-55-7995-01 4 94316827 94316827 C G GRID2 Missense_Mutation p.R439G 0.15 deleterious(0.01) benign(0.334) TCGA-55-7995-01 4 954879 954879 G T DGKQ Silent p.V895V 0.24 TCGA-55-7995-01 5 101755667 101755667 G T SLCO6A1 Silent p.S445S 0.29 TCGA-55-7995-01 5 107700679 107700679 C A FBXL17 Missense_Mutation p.L378F 0.43 deleterious(0) probably_damaging(0.999) TCGA-55-7995-01 5 110454803 110454803 T A WDR36 Missense_Mutation p.L686H 0.48 deleterious(0) probably_damaging(0.993) TCGA-55-7995-01 5 126753451 126753451 G - MEGF10 Frame_Shift_Del p.A419Qfs*6 0.32 TCGA-55-7995-01 5 129241223 129241223 C T CHSY3 Missense_Mutation p.P234L 0.25 deleterious(0) probably_damaging(1) TCGA-55-7995-01 5 131325793 131325793 C A ACSL6 Missense_Mutation p.E150D 0.48 deleterious(0.05) probably_damaging(0.999) TCGA-55-7995-01 5 132096630 132096630 C A SEPT8 Missense_Mutation p.V384L 0.28 tolerated(1) benign(0.009) TCGA-55-7995-01 5 136476289 136476289 G T SPOCK1 Missense_Mutation p.S109R 0.46 deleterious(0) benign(0.236) TCGA-55-7995-01 5 140724454 140724454 C A PCDHGA3 Missense_Mutation p.P285H 0.56 deleterious_low_confidence(0.04) benign(0.236) TCGA-55-7995-01 5 140782543 140782543 G T PCDHGA9 Missense_Mutation p.Q8H 0.50 tolerated_low_confidence(0.16) benign(0.004) TCGA-55-7995-01 5 140799829 140799829 G A PCDHGB7 Silent p.K801K 0.18 TCGA-55-7995-01 5 145719487 145719487 C A POU4F3 Missense_Mutation p.T166N 0.37 tolerated(0.18) benign(0.028) TCGA-55-7995-01 5 149578850 149578850 G T SLC6A7 Missense_Mutation p.W215L 0.56 tolerated(0.25) probably_damaging(0.982) TCGA-55-7995-01 5 150509009 150509009 A T ANXA6 Missense_Mutation p.F293I 0.22 deleterious(0) probably_damaging(0.999) TCGA-55-7995-01 5 153857547 153857547 C A HAND1 Missense_Mutation p.A8S 0.40 tolerated(0.56) benign(0.022) TCGA-55-7995-01 5 157162889 157162889 G T THG1L Missense_Mutation p.A192S 0.47 tolerated(0.23) benign(0.021) TCGA-55-7995-01 5 168100192 168100192 G T SLIT3 Silent p.L1277L 0.17 TCGA-55-7995-01 5 176025660 176025660 C A GPRIN1 Silent p.T392T 0.47 TCGA-55-7995-01 5 176305105 176305105 C A UNC5A Missense_Mutation p.H616N 0.54 tolerated(0.23) benign(0.001) TCGA-55-7995-01 5 178139416 178139416 T A ZNF354A Missense_Mutation p.H488L 0.37 deleterious(0) probably_damaging(1) TCGA-55-7995-01 5 178548712 178548712 T C ADAMTS2 Missense_Mutation p.Q1043R 0.52 deleterious(0) benign(0.072) TCGA-55-7995-01 5 31323124 31323124 C G CDH6 Silent p.P694P 0.28 TCGA-55-7995-01 5 33751494 33751494 T C ADAMTS12 Intron 0.35 TCGA-55-7995-01 5 34757585 34757585 A G RAI14 Missense_Mutation p.N20D 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-55-7995-01 5 35065407 35065407 C A PRLR Silent p.G551G 0.22 TCGA-55-7995-01 5 35667323 35667323 G T SPEF2 Missense_Mutation p.L439F 0.24 tolerated(0.11) benign(0.025) TCGA-55-7995-01 5 35774071 35774071 T G SPEF2 Missense_Mutation p.N1342K 0.33 tolerated(0.56) benign(0.006) TCGA-55-7995-01 5 35806907 35806907 G T SPEF2 Missense_Mutation p.R1703S 0.37 tolerated(0.69) benign(0.012) TCGA-55-7995-01 5 36152296 36152296 C T SKP2 5'UTR 0.28 TCGA-55-7995-01 5 38403925 38403925 C T EGFLAM Intron 0.21 TCGA-55-7995-01 5 63894231 63894231 G T RGS7BP Missense_Mutation p.R217S 0.32 deleterious_low_confidence(0) unknown(0) TCGA-55-7995-01 5 94289024 94289024 C G MCTP1 Missense_Mutation p.E294Q 0.20 tolerated(0.29) probably_damaging(0.995) TCGA-55-7995-01 5 9629287 9629287 T A TAS2R1 Missense_Mutation p.Q286H 0.20 deleterious(0) possibly_damaging(0.799) TCGA-55-7995-01 6 10419659 10419659 C A TFAP2A 5'Flank 0.19 TCGA-55-7995-01 6 107390843 107390843 C T BEND3 Missense_Mutation p.E518K 0.22 tolerated(0.05) benign(0.169) TCGA-55-7995-01 6 108499423 108499423 C A NR2E1 Missense_Mutation p.S207Y 0.26 tolerated(0.28) possibly_damaging(0.478) TCGA-55-7995-01 6 10874263 10874263 C A GCM2 Missense_Mutation p.G496C 0.34 deleterious(0) possibly_damaging(0.873) TCGA-55-7995-01 6 109772820 109772820 G T MICAL1 Missense_Mutation p.L306M 0.20 deleterious(0.03) possibly_damaging(0.863) TCGA-55-7995-01 6 117681112 117681112 C A ROS1 Missense_Mutation p.D1170Y 0.11 deleterious(0) probably_damaging(0.998) TCGA-55-7995-01 6 118887426 118887426 T C CEP85L Missense_Mutation p.T99A 0.31 tolerated(0.19) benign(0.011) TCGA-55-7995-01 6 119670121 119670121 C A MAN1A1 Missense_Mutation p.R37L 0.29 deleterious(0) probably_damaging(0.96) TCGA-55-7995-01 6 128505781 128505781 C G PTPRK Missense_Mutation p.D320H 0.21 deleterious(0) possibly_damaging(0.899) TCGA-55-7995-01 6 130535492 130535492 C A SAMD3 Missense_Mutation p.A87S 0.33 tolerated_low_confidence(0.08) benign(0.01) TCGA-55-7995-01 6 131958539 131958539 G A ENPP3 Silent p.L5L 0.35 TCGA-55-7995-01 6 136599823 136599823 C G BCLAF1 Missense_Mutation p.G66R 0.19 deleterious_low_confidence(0) unknown(0) TCGA-55-7995-01 6 142396909 142396909 C A NMBR Missense_Mutation p.G350V 0.14 deleterious(0.04) benign(0.001) TCGA-55-7995-01 6 143094128 143094128 C A HIVEP2 Missense_Mutation p.G583V 0.34 tolerated(0.06) probably_damaging(1) TCGA-55-7995-01 6 152536113 152536113 T A SYNE1 Missense_Mutation p.K7425M 0.49 probably_damaging(0.979) TCGA-55-7995-01 6 155750179 155750179 C A NOX3 Silent p.V298V 0.46 TCGA-55-7995-01 6 18457533 18457533 G T RNF144B Missense_Mutation p.W160L 0.18 deleterious(0) probably_damaging(0.98) TCGA-55-7995-01 6 26104248 26104248 G A HIST1H4C Missense_Mutation p.D25N 0.11 tolerated_low_confidence(0.05) benign(0.205) TCGA-55-7995-01 6 26388374 26388374 C G BTN2A2 Silent p.A192A 0.30 TCGA-55-7995-01 6 31698571 31698571 G A CLIC1 3'UTR 0.32 TCGA-55-7995-01 6 31726001 31726001 G T MSH5 Missense_Mutation p.Q358H 0.23 tolerated(0.18) benign(0.007) TCGA-55-7995-01 6 32163297 32163297 C G NOTCH4 Missense_Mutation p.E1977Q 0.12 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-55-7995-01 6 36178287 36178287 C T BRPF3 Missense_Mutation p.R721C 0.18 deleterious(0.04) possibly_damaging(0.786) TCGA-55-7995-01 6 37186472 37186472 T C TMEM217 Missense_Mutation p.Q112R 0.25 deleterious(0.05) probably_damaging(0.981) TCGA-55-7995-01 6 40400490 40400490 C A LRFN2 Silent p.R121R 0.17 TCGA-55-7995-01 6 45917054 45917054 C T CLIC5 Missense_Mutation p.D239N 0.35 deleterious(0.01) possibly_damaging(0.513) TCGA-55-7995-01 6 50718980 50718980 C A TFAP2D Missense_Mutation p.S361Y 0.45 deleterious(0) probably_damaging(0.934) TCGA-55-7995-01 6 51923373 51923373 G T PKHD1 Silent p.G420G 0.11 TCGA-55-7995-01 6 52996875 52996875 G A GCM1 Missense_Mutation p.P124L 0.34 deleterious(0.01) probably_damaging(0.981) TCGA-55-7995-01 6 56471295 56471295 C A DST Intron 0.35 TCGA-55-7995-01 6 66112392 66112392 C A EYS Missense_Mutation p.C388F 0.08 tolerated(0.68) benign(0.002) TCGA-55-7995-01 6 75834047 75834047 C A COL12A1 Silent p.G2216G 0.18 TCGA-55-7995-01 6 76373226 76373226 A T SENP6 Missense_Mutation p.N329I 0.40 deleterious(0) probably_damaging(0.997) TCGA-55-7995-01 6 76576707 76576707 G T MYO6 Missense_Mutation p.C610F 0.29 tolerated(0.4) unknown(0) TCGA-55-7995-01 6 82950204 82950204 C A IBTK 5'UTR 0.27 TCGA-55-7995-01 6 84233832 84233832 G T PRSS35 Silent p.R224R 0.23 TCGA-55-7995-01 6 99817544 99817544 C A COQ3 Nonsense_Mutation p.G348* 0.31 TCGA-55-7995-01 7 100552928 100552928 C A MUC3A Missense_Mutation p.L525I 0.10 tolerated(0.41) possibly_damaging(0.639) TCGA-55-7995-01 7 101199152 101199152 G A COL26A1 Missense_Mutation p.D389N 0.26 deleterious(0.01) benign(0.134) TCGA-55-7995-01 7 103969569 103969569 C A LHFPL3 Silent p.L114L 0.24 TCGA-55-7995-01 7 107430094 107430094 A T SLC26A3 Missense_Mutation p.Y204N 0.18 deleterious(0) probably_damaging(1) TCGA-55-7995-01 7 116955390 116955390 G T WNT2 Missense_Mutation p.S108Y 0.49 deleterious(0) possibly_damaging(0.653) TCGA-55-7995-01 7 117227796 117227796 A T CFTR Missense_Mutation p.I530F 0.25 tolerated(0.29) benign(0.005) TCGA-55-7995-01 7 121623815 121623815 C A PTPRZ1 Missense_Mutation p.P239H 0.19 deleterious(0) probably_damaging(1) TCGA-55-7995-01 7 121691969 121691969 C A PTPRZ1 Missense_Mutation p.D2076E 0.28 deleterious(0) probably_damaging(0.981) TCGA-55-7995-01 7 122635295 122635295 C A TAS2R16 Missense_Mutation p.G132C 0.10 deleterious(0) possibly_damaging(0.84) TCGA-55-7995-01 7 12662505 12662509 CTAAA - SCIN Frame_Shift_Del p.K250Ifs*29 0.40 TCGA-55-7995-01 7 129853351 129853351 G C SSMEM1 Missense_Mutation p.G72A 0.51 deleterious(0.02) benign(0.017) TCGA-55-7995-01 7 142104275 142104275 G T TRBV6-9 Missense_Mutation p.R64S 0.57 deleterious(0) benign(0.003) TCGA-55-7995-01 7 150417304 150417304 G A GIMAP1 Missense_Mutation p.R71H 0.54 tolerated(0.32) probably_damaging(0.953) TCGA-55-7995-01 7 153584789 153584789 C G DPP6 Missense_Mutation p.I7M 0.70 tolerated(0.16) benign(0) TCGA-55-7995-01 7 154862650 154862650 C A HTR5A Missense_Mutation p.T14N 0.63 tolerated(0.2) benign(0.046) TCGA-55-7995-01 7 155251006 155251006 G A EN2 5'UTR 0.67 TCGA-55-7995-01 7 19156411 19156411 C A TWIST1 Silent p.V178V 0.32 TCGA-55-7995-01 7 27224662 27224662 C A HOXA11 Silent p.L34L 0.45 TCGA-55-7995-01 7 39730155 39730155 G C RALA Missense_Mutation p.E97Q 0.20 tolerated(0.09) probably_damaging(0.941) TCGA-55-7995-01 7 42972083 42972083 A G MRPL32 Missense_Mutation p.Q33R 0.47 tolerated(0.46) benign(0.003) TCGA-55-7995-01 7 45148617 45148617 G T TBRG4 Missense_Mutation p.H74N 0.29 tolerated(0.16) benign(0.001) TCGA-55-7995-01 7 48147041 48147041 G T UPP1 Missense_Mutation p.V244F 0.41 deleterious(0) probably_damaging(0.992) TCGA-55-7995-01 7 56155351 56155351 G C PHKG1 Missense_Mutation p.R68G 0.61 deleterious(0.03) possibly_damaging(0.819) TCGA-55-7995-01 7 64852854 64852854 C G ZNF92 Missense_Mutation p.L15V 0.32 tolerated(0.13) probably_damaging(0.994) TCGA-55-7995-01 7 70255909 70255909 G C AUTS2 Missense_Mutation p.R1236T 0.09 deleterious(0) probably_damaging(0.995) TCGA-55-7995-01 7 71571143 71571143 G C CALN1 Missense_Mutation p.D127E 0.33 deleterious(0.05) possibly_damaging(0.683) TCGA-55-7995-01 7 74564642 74564642 C T GTF2IRD2B Missense_Mutation p.H797Y 0.18 deleterious(0.01) probably_damaging(0.968) TCGA-55-7995-01 7 81612644 81612644 T - CACNA2D1 Frame_Shift_Del p.K627Rfs*4 0.23 TCGA-55-7995-01 7 82387795 82387795 G T PCLO 3'UTR 0.42 TCGA-55-7995-01 7 86539254 86539254 C A KIAA1324L Missense_Mutation p.G745W 0.33 deleterious(0) possibly_damaging(0.833) TCGA-55-7995-01 7 87083865 87083865 T C ABCB4 Silent p.E110E 0.15 TCGA-55-7995-01 7 88963447 88963447 T A ZNF804B Missense_Mutation p.L384Q 0.19 deleterious(0.01) possibly_damaging(0.907) TCGA-55-7995-01 7 88965177 88965177 G T ZNF804B Missense_Mutation p.V961F 0.17 tolerated(0.44) benign(0.072) TCGA-55-7995-01 7 97766717 97766717 G T LMTK2 Missense_Mutation p.C65F 0.23 deleterious(0) probably_damaging(0.999) TCGA-55-7995-01 8 101721767 101721767 C T PABPC1 Missense_Mutation p.V389I 0.05 tolerated(0.32) benign(0.003) TCGA-55-7995-01 8 107751703 107751703 C T OXR1 Silent p.D686D 0.25 TCGA-55-7995-01 8 107754476 107754476 A G OXR1 Silent p.P782P 0.48 TCGA-55-7995-01 8 110476845 110476845 C A PKHD1L1 Missense_Mutation p.P2595Q 0.55 deleterious(0) probably_damaging(0.993) TCGA-55-7995-01 8 110530423 110530423 C A PKHD1L1 Missense_Mutation p.T3906N 0.24 tolerated(0.11) benign(0.011) TCGA-55-7995-01 8 114449099 114449099 C T CSMD3 5'UTR 0.55 TCGA-55-7995-01 8 130760960 130760960 G A GSDMC Silent p.F438F 0.30 TCGA-55-7995-01 8 132002719 132002719 G T ADCY8 Silent p.R344R 0.41 TCGA-55-7995-01 8 13357314 13357314 G T DLC1 Missense_Mutation p.D89E 0.25 tolerated_low_confidence(0.12) benign(0.011) TCGA-55-7995-01 8 139163923 139163923 T G FAM135B Missense_Mutation p.H932P 0.19 tolerated(0.3) benign(0.003) TCGA-55-7995-01 8 139601558 139601558 G A COL22A1 Missense_Mutation p.P1607S 0.57 unknown(0) TCGA-55-7995-01 8 143381847 143381847 C T TSNARE1 Silent p.E430E 0.12 TCGA-55-7995-01 8 145011158 145011158 G C PLEC Missense_Mutation p.L279V 0.20 unknown(0) TCGA-55-7995-01 8 22571033 22571033 G A PEBP4 Silent p.D178D 0.36 TCGA-55-7995-01 8 33246548 33246548 T C FUT10 Missense_Mutation p.N382S 0.38 tolerated(0.08) benign(0.439) TCGA-55-7995-01 8 42977938 42977938 C T POMK Missense_Mutation p.A324V 0.48 deleterious(0.04) probably_damaging(0.957) TCGA-55-7995-01 8 43027457 43027457 G C HGSNAT Missense_Mutation p.A250P 0.46 deleterious(0.01) probably_damaging(0.932) TCGA-55-7995-01 8 55542632 55542632 G T RP1 Missense_Mutation p.A2064S 0.53 tolerated(0.75) benign(0.03) TCGA-55-7995-01 8 67813571 67813571 C T MCMDC2 Missense_Mutation p.A586V 0.12 deleterious(0) possibly_damaging(0.672) TCGA-55-7995-01 8 71037070 71037070 G C NCOA2 Missense_Mutation p.T1316S 0.30 tolerated(0.94) possibly_damaging(0.634) TCGA-55-7995-01 8 72987608 72987608 C T TRPA1 Missense_Mutation p.E13K 0.23 tolerated_low_confidence(0.19) benign(0.006) TCGA-55-7995-01 8 77761784 77761784 G T ZFHX4 Missense_Mutation p.D1228Y 0.39 probably_damaging(0.934) TCGA-55-7995-01 8 86242062 86242062 G T CA1 Silent p.A175A 0.48 TCGA-55-7995-01 8 92998465 92998465 A G RUNX1T1 Missense_Mutation p.L400S 0.26 deleterious(0) probably_damaging(0.917) TCGA-55-7995-01 9 101243262 101243262 G C GABBR2 Missense_Mutation p.I250M 0.58 deleterious(0) probably_damaging(0.961) TCGA-55-7995-01 9 104449158 104449158 T C GRIN3A Missense_Mutation p.T342A 0.49 tolerated(1) benign(0.001) TCGA-55-7995-01 9 107521575 107521575 C G NIPSNAP3A Missense_Mutation p.Q234E 0.53 tolerated(0.19) benign(0.012) TCGA-55-7995-01 9 108467925 108467925 G T TMEM38B Missense_Mutation p.A54S 0.60 tolerated(0.25) possibly_damaging(0.721) TCGA-55-7995-01 9 116037978 116037978 G A PRPF4 5'UTR 0.46 TCGA-55-7995-01 9 119203061 119203061 G C ASTN2 Missense_Mutation p.D1152E 0.15 deleterious(0.02) unknown(0) TCGA-55-7995-01 9 120475245 120475245 T A TLR4 Missense_Mutation p.L280Q 0.58 deleterious(0) probably_damaging(1) TCGA-55-7995-01 9 128094292 128094292 G T GAPVD1 Missense_Mutation p.R754M 0.40 tolerated(0.07) probably_damaging(0.999) TCGA-55-7995-01 9 131495720 131495720 G T ZER1 Missense_Mutation p.T743N 0.35 deleterious(0.02) probably_damaging(0.972) TCGA-55-7995-01 9 137646139 137646139 C A COL5A1 Silent p.G598G 0.28 TCGA-55-7995-01 9 140150515 140150515 G A NELFB Missense_Mutation p.E87K 0.15 tolerated(0.46) benign(0.008) TCGA-55-7995-01 9 21367553 21367553 G T IFNA13 Missense_Mutation p.L153I 0.38 deleterious(0.04) benign(0.431) TCGA-55-7995-01 9 27949018 27949018 G C LINGO2 Missense_Mutation p.T551R 0.57 deleterious(0.01) possibly_damaging(0.795) TCGA-55-7995-01 9 32631446 32631446 C G TAF1L Missense_Mutation p.G1378R 0.60 deleterious(0.04) possibly_damaging(0.535) TCGA-55-7995-01 9 35095469 35095469 G A PIGO Missense_Mutation p.R32C 0.14 deleterious(0) probably_damaging(1) TCGA-55-7995-01 9 43627122 43627122 G T SPATA31A6 Missense_Mutation p.P522H 0.58 tolerated(0.07) probably_damaging(0.986) TCGA-55-7995-01 9 72965198 72965198 G A SMC5 Missense_Mutation p.E1020K 0.16 deleterious(0) probably_damaging(1) TCGA-55-7995-01 9 79862173 79862173 A C VPS13A Splice_Site p.X634_splice 0.44 TCGA-55-7995-01 9 91994000 91994000 G T SEMA4D Silent p.L736L 0.65 TCGA-55-7995-01 9 96051765 96051765 G T WNK2 Nonsense_Mutation p.E1614* 0.55 TCGA-55-7995-01 X 10096670 10096670 G C WWC3 Missense_Mutation p.R785P 0.08 deleterious(0.01) probably_damaging(0.936) TCGA-55-7995-01 X 101091751 101091751 A G NXF5 Intron 0.42 TCGA-55-7995-01 X 101615444 101615444 C A NXF2B 3'UTR 0.19 TCGA-55-7995-01 X 102841914 102841914 G A TCEAL4 Missense_Mutation p.G104E 0.14 tolerated(0.3) benign(0.109) TCGA-55-7995-01 X 102931158 102931158 A G MORF4L2 Silent p.N266N 0.35 TCGA-55-7995-01 X 10535195 10535195 C T MID1 Silent p.V131V 0.24 TCGA-55-7995-01 X 105855778 105855778 G C CXorf57 Silent p.G156G 0.23 TCGA-55-7995-01 X 107159297 107159297 A C MID2 Missense_Mutation p.E380A 0.17 deleterious(0.02) benign(0.11) TCGA-55-7995-01 X 107420137 107420137 C A COL4A6 Missense_Mutation p.V875L 0.22 benign(0.27) TCGA-55-7995-01 X 109695605 109695605 C T RGAG1 Missense_Mutation p.S587L 0.45 tolerated(0.19) benign(0.014) TCGA-55-7995-01 X 109695657 109695657 A T RGAG1 Silent p.P604P 0.43 TCGA-55-7995-01 X 109964752 109964752 G T CHRDL1 Missense_Mutation p.S103Y 0.39 tolerated(0.14) benign(0.379) TCGA-55-7995-01 X 110653415 110653415 G T DCX Missense_Mutation p.A152D 0.44 deleterious(0) probably_damaging(0.97) TCGA-55-7995-01 X 111874739 111874739 C T LHFPL1 Missense_Mutation p.G191E 0.41 deleterious(0.01) probably_damaging(0.991) TCGA-55-7995-01 X 117032857 117032857 T C KLHL13 3'UTR 0.52 TCGA-55-7995-01 X 118220803 118220803 C T KIAA1210 Missense_Mutation p.A1464T 0.17 tolerated(0.45) benign(0.001) TCGA-55-7995-01 X 128876113 128876113 G T XPNPEP2 Missense_Mutation p.D27Y 0.15 tolerated_low_confidence(0.27) benign(0.002) TCGA-55-7995-01 X 132162273 132162273 G T USP26 5'UTR 0.56 TCGA-55-7995-01 X 135732556 135732556 G A CD40LG Silent p.K96K 0.62 TCGA-55-7995-01 X 138884472 138884472 A T ATP11C Silent p.I197I 0.41 TCGA-55-7995-01 X 153186551 153186551 G A ARHGAP4 Missense_Mutation p.T166M 0.44 tolerated(0.06) benign(0.086) TCGA-55-7995-01 X 15342892 15342892 C A PIGA Missense_Mutation p.K361N 0.20 tolerated(0.11) benign(0.009) TCGA-55-7995-01 X 153697069 153697069 G A PLXNA3 Silent p.L1428L 0.25 TCGA-55-7995-01 X 1584368 1584368 G A P2RY8 3'UTR 0.09 TCGA-55-7995-01 X 19013082 19013082 C A GPR64 Missense_Mutation p.S934I 0.19 deleterious(0) benign(0.282) TCGA-55-7995-01 X 22056629 22056629 G A PHEX Missense_Mutation p.C54Y 0.21 deleterious(0) probably_damaging(0.997) TCGA-55-7995-01 X 22291878 22291878 C A ZNF645 Missense_Mutation p.P257H 0.19 tolerated(0.11) possibly_damaging(0.906) TCGA-55-7995-01 X 23397800 23397800 C T PTCHD1 Silent p.C148C 0.18 TCGA-55-7995-01 X 23411685 23411685 C T PTCHD1 Missense_Mutation p.P684S 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-7995-01 X 26212020 26212020 T C MAGEB6 Silent p.N19N 0.26 TCGA-55-7995-01 X 3002485 3002485 T A ARSF Missense_Mutation p.L203Q 0.24 deleterious(0) probably_damaging(0.983) TCGA-55-7995-01 X 30260350 30260350 C A MAGEB4 Missense_Mutation p.A33E 0.17 tolerated(0.1) possibly_damaging(0.501) TCGA-55-7995-01 X 30261263 30261264 CA - MAGEB4 Frame_Shift_Del p.T338Ifs*3 0.11 TCGA-55-7995-01 X 30268746 30268746 G - MAGEB1 Frame_Shift_Del p.D47Ifs*62 0.17 TCGA-55-7995-01 X 31284999 31284999 C A DMD Intron 0.50 TCGA-55-7995-01 X 31285000 31285000 C A DMD Intron 0.50 TCGA-55-7995-01 X 3238165 3238165 T A MXRA5 Missense_Mutation p.Q1854L 0.13 deleterious(0.01) possibly_damaging(0.464) TCGA-55-7995-01 X 32429871 32429871 G C DMD Missense_Mutation p.Q1411E 0.17 benign(0.092) TCGA-55-7995-01 X 34149390 34149390 G T FAM47A Missense_Mutation p.H336N 0.10 tolerated(0.06) possibly_damaging(0.888) TCGA-55-7995-01 X 36162923 36162923 C T CHDC2 Silent p.I502I 0.17 TCGA-55-7995-01 X 37028443 37028443 C A FAM47C Missense_Mutation p.L654I 0.43 tolerated(0.05) possibly_damaging(0.64) TCGA-55-7995-01 X 40495907 40495907 C T CXorf38 Missense_Mutation p.E227K 0.19 deleterious(0.05) benign(0.008) TCGA-55-7995-01 X 41554925 41554925 C T GPR34 Silent p.V13V 0.14 TCGA-55-7995-01 X 41554971 41554971 C G GPR34 Missense_Mutation p.H29D 0.15 tolerated(0.23) benign(0.001) TCGA-55-7995-01 X 43592026 43592026 C A MAOA Missense_Mutation p.L346M 0.17 tolerated(0.07) benign(0.034) TCGA-55-7995-01 X 43640774 43640774 T C MAOB Missense_Mutation p.I316V 0.20 tolerated(0.46) benign(0.005) TCGA-55-7995-01 X 44938440 44938440 T A KDM6A Missense_Mutation p.H996Q 0.11 tolerated(0.06) probably_damaging(0.993) TCGA-55-7995-01 X 48418389 48418389 A T TBC1D25 Missense_Mutation p.N365Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-7995-01 X 48649525 48649525 C A GATA1 Missense_Mutation p.F3L 0.53 deleterious_low_confidence(0.02) benign(0.014) TCGA-55-7995-01 X 48767187 48767187 A G SLC35A2 Silent p.L60L 0.27 TCGA-55-7995-01 X 48849922 48849922 C T GRIPAP1 Silent p.G125G 0.17 TCGA-55-7995-01 X 48933404 48933404 C A AF196779.12 Silent p.A73A 0.20 TCGA-55-7995-01 X 49047837 49047837 G A SYP Intron 0.42 TCGA-55-7995-01 X 49086701 49086701 C G CACNA1F Silent p.T266T 0.11 TCGA-55-7995-01 X 49111899 49111899 A C FOXP3 Silent p.A269A 0.27 TCGA-55-7995-01 X 49346285 49346285 A T GAGE12H Silent p.P38P 0.65 TCGA-55-7995-01 X 49837207 49837207 G A CLCN5 Missense_Mutation p.G127S 0.16 deleterious(0.01) probably_damaging(1) TCGA-55-7995-01 X 50053320 50053320 C G CCNB3 Missense_Mutation p.S717R 0.15 tolerated(0.36) benign(0.205) TCGA-55-7995-01 X 50135448 50135448 C A DGKK Splice_Site 0.38 TCGA-55-7995-01 X 50351008 50351008 G C SHROOM4 Missense_Mutation p.S1045C 0.17 tolerated(0.05) possibly_damaging(0.606) TCGA-55-7995-01 X 50658940 50658940 C G BMP15 Missense_Mutation p.S171C 0.11 tolerated(0.08) probably_damaging(0.939) TCGA-55-7995-01 X 53579742 53579742 C T HUWE1 Silent p.E2869E 0.17 TCGA-55-7995-01 X 53655812 53655812 G C HUWE1 Silent p.V335V 0.23 TCGA-55-7995-01 X 54492144 54492144 G A FGD1 Silent p.I494I 0.15 TCGA-55-7995-01 X 54578050 54578050 C A GNL3L Missense_Mutation p.P305T 0.14 deleterious(0) probably_damaging(1) TCGA-55-7995-01 X 54578051 54578051 C A GNL3L Missense_Mutation p.P305Q 0.13 deleterious(0) probably_damaging(1) TCGA-55-7995-01 X 54783848 54783848 G T ITIH6 Missense_Mutation p.P887T 0.17 tolerated(0.13) benign(0.254) TCGA-55-7995-01 X 54839946 54839946 G T MAGED2 Missense_Mutation p.V412L 0.14 tolerated(0.41) possibly_damaging(0.555) TCGA-55-7995-01 X 55187610 55187610 A T FAM104B 5'UTR 0.16 TCGA-55-7995-01 X 55515108 55515108 G C USP51 Missense_Mutation p.L89V 0.20 tolerated_low_confidence(0.08) unknown(0) TCGA-55-7995-01 X 56591287 56591287 G T UBQLN2 Missense_Mutation p.Q327H 0.19 tolerated(0.12) possibly_damaging(0.535) TCGA-55-7995-01 X 57405214 57405214 C T FAAH2 Silent p.I291I 0.20 TCGA-55-7995-01 X 6069138 6069138 G A NLGN4X Silent p.L124L 0.15 TCGA-55-7995-01 X 64722397 64722397 G A ZC3H12B Missense_Mutation p.D607N 0.15 deleterious(0) possibly_damaging(0.786) TCGA-55-7995-01 X 65474909 65474909 G T HEPH Nonsense_Mutation p.E920* 0.17 TCGA-55-7995-01 X 70352293 70352293 G C MED12 Missense_Mutation p.Q1440H 0.31 possibly_damaging(0.829) TCGA-55-7995-01 X 70598125 70598125 C G TAF1 Nonsense_Mutation p.S345* 0.16 TCGA-55-7995-01 X 70787407 70787407 G C OGT Missense_Mutation p.E883Q 0.27 deleterious(0) probably_damaging(1) TCGA-55-7995-01 X 73042795 73042795 A G XIST RNA 0.47 TCGA-55-7995-01 X 74375975 74375975 G T ABCB7 Missense_Mutation p.Q45K 0.13 tolerated_low_confidence(0.37) benign(0.001) TCGA-55-7995-01 X 74698765 74698765 C G ZDHHC15 Missense_Mutation p.W73C 0.22 deleterious(0) probably_damaging(0.967) TCGA-55-7995-01 X 77301058 77301058 C T ATP7A Silent p.L1405L 0.19 TCGA-55-7995-01 X 7811671 7811671 C T VCX Nonsense_Mutation p.Q79* 0.08 TCGA-55-7995-01 X 79939645 79939645 A T BRWD3 Missense_Mutation p.I1366K 0.21 deleterious(0) possibly_damaging(0.865) TCGA-55-7995-01 X 83126524 83126524 C A CYLC1 Silent p.L41L 0.18 TCGA-55-7995-01 X 8434097 8434097 C T VCX3B Silent p.S138S 0.19 TCGA-55-7995-01 X 84342596 84342596 G T APOOL Missense_Mutation p.G240V 0.21 deleterious(0.01) possibly_damaging(0.707) TCGA-55-7995-01 X 85119680 85119680 G T CHM Missense_Mutation p.F639L 0.34 tolerated(0.68) benign(0) TCGA-55-7995-01 X 88008864 88008864 G T CPXCR1 Missense_Mutation p.S150I 0.35 deleterious(0) benign(0.193) TCGA-55-7995-01 X 91133089 91133089 C G PCDH11X Missense_Mutation p.T617S 0.27 tolerated(0.62) benign(0.034) TCGA-55-7995-01 X 91456415 91456415 G T PCDH11X Missense_Mutation p.E1025D 0.42 tolerated(0.2) benign(0.002) TCGA-55-7995-01 X 91642799 91642799 G - PCDH11X Frame_Shift_Del p.G1071Efs*50 0.35 TCGA-55-7995-01 X 92926871 92926871 A T NAP1L3 Missense_Mutation p.L478Q 0.17 tolerated(0.15) probably_damaging(0.973) TCGA-55-7995-01 X 96854249 96854249 C G DIAPH2 Intron 0.17 TCGA-55-7995-01 X 99924308 99924308 C A SRPX2 Missense_Mutation p.Q387K 0.14 tolerated(1) benign(0.088) TCGA-55-7995-01 X 99941691 99941691 A T SYTL4 Nonsense_Mutation p.Y424* 0.15 TCGA-55-8085-01 10 104404790 104404790 A T TRIM8 Missense_Mutation p.D139V 0.33 tolerated(0.08) benign(0.086) TCGA-55-8085-01 10 105218385 105218385 A T CALHM1 Missense_Mutation p.C42S 0.16 deleterious(0) probably_damaging(0.996) TCGA-55-8085-01 10 118315563 118315563 C A PNLIP Missense_Mutation p.T288N 0.30 tolerated(0.07) benign(0.016) TCGA-55-8085-01 10 119307665 119307665 G T EMX2 Silent p.G227G 0.29 TCGA-55-8085-01 10 124380804 124380804 C T DMBT1 Missense_Mutation p.S1710L 0.25 deleterious(0.04) probably_damaging(0.998) TCGA-55-8085-01 10 126449058 126449058 C T METTL10 3'UTR 0.23 TCGA-55-8085-01 10 13234530 13234530 G - MCM10 Frame_Shift_Del p.E571Rfs*2 0.18 TCGA-55-8085-01 10 132891320 132891320 G A TCERG1L 3'UTR 0.36 TCGA-55-8085-01 10 15614330 15614330 G A ITGA8 Silent p.I839I 0.22 TCGA-55-8085-01 10 15614331 15614331 A T ITGA8 Missense_Mutation p.I839N 0.22 tolerated(0.13) benign(0.063) TCGA-55-8085-01 10 34805969 34805969 G A PARD3 Missense_Mutation p.S114L 0.27 deleterious(0.03) possibly_damaging(0.679) TCGA-55-8085-01 10 49376712 49376712 C T FRMPD2 Missense_Mutation p.A1155T 0.60 deleterious(0.03) benign(0.284) TCGA-55-8085-01 10 52103872 52103872 C T SGMS1 Translation_Start_Site p.M1? 0.18 deleterious_low_confidence(0) possibly_damaging(0.714) TCGA-55-8085-01 10 75551941 75551941 G A ZSWIM8 Silent p.K548K 0.21 TCGA-55-8085-01 10 75553646 75553646 G A ZSWIM8 Silent p.T823T 0.29 TCGA-55-8085-01 10 86131302 86131302 C T CCSER2 Missense_Mutation p.S165L 0.27 deleterious(0.04) possibly_damaging(0.826) TCGA-55-8085-01 10 95107421 95107421 C A MYOF Missense_Mutation p.R1401L 0.27 tolerated(0.28) probably_damaging(0.998) TCGA-55-8085-01 10 99329918 99329918 G A UBTD1 Missense_Mutation p.E108K 0.24 deleterious(0) probably_damaging(0.988) TCGA-55-8085-01 11 102649403 102649403 C T MMP10 Missense_Mutation p.G192R 0.19 deleterious(0) probably_damaging(0.999) TCGA-55-8085-01 11 14901918 14901918 T A CYP2R1 Missense_Mutation p.D255V 0.29 tolerated(0.3) possibly_damaging(0.779) TCGA-55-8085-01 11 33763479 33763479 C A FBXO3 Missense_Mutation p.R464I 0.31 tolerated_low_confidence(0.07) unknown(0) TCGA-55-8085-01 11 4594654 4594654 C T C11orf40 Missense_Mutation p.D64N 0.19 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-55-8085-01 11 55606365 55606365 G T OR5D16 Silent p.G46G 0.27 TCGA-55-8085-01 11 55904814 55904814 A G OR8J3 Silent p.C127C 0.32 TCGA-55-8085-01 11 71847043 71847043 G A FOLR3 Silent p.L15L 0.23 TCGA-55-8085-01 11 76239414 76239414 G C C11orf30 Missense_Mutation p.E700Q 0.28 deleterious_low_confidence(0.01) benign(0.289) TCGA-55-8085-01 11 76239468 76239468 G A C11orf30 Missense_Mutation p.D718N 0.27 tolerated(0.2) possibly_damaging(0.587) TCGA-55-8085-01 11 96124978 96124978 C T JRKL Missense_Mutation p.L389F 0.38 tolerated(0.65) benign(0.002) TCGA-55-8085-01 12 100444051 100444051 C T UHRF1BP1L Missense_Mutation p.D1205N 0.19 deleterious(0) possibly_damaging(0.611) TCGA-55-8085-01 12 110399099 110399099 G A GIT2 Missense_Mutation p.S324L 0.30 deleterious(0.02) benign(0.251) TCGA-55-8085-01 12 125575969 125575969 C A AACS Intron 0.19 TCGA-55-8085-01 12 15654855 15654855 C G PTPRO Nonsense_Mutation p.Y321* 0.29 TCGA-55-8085-01 12 1969349 1969349 A T CACNA2D4 Missense_Mutation p.N634K 0.29 deleterious(0.03) benign(0.023) TCGA-55-8085-01 12 32138266 32138266 G A KIAA1551 Silent p.L1459L 0.20 TCGA-55-8085-01 12 4479700 4479700 G T FGF23 Missense_Mutation p.P189T 0.23 deleterious(0) probably_damaging(0.999) TCGA-55-8085-01 12 48369263 48369263 G T COL2A1 Silent p.A1241A 0.30 TCGA-55-8085-01 12 56480402 56480402 G C ERBB3 Missense_Mutation p.R170P 0.16 tolerated(0.92) benign(0) TCGA-55-8085-01 12 72014080 72014080 C A ZFC3H1 Missense_Mutation p.C1587F 0.24 deleterious(0) probably_damaging(0.997) TCGA-55-8085-01 12 75601405 75601405 G T KCNC2 Missense_Mutation p.T120N 0.16 deleterious(0) probably_damaging(1) TCGA-55-8085-01 13 111082292 111082292 G - COL4A2 Frame_Shift_Del p.D180Tfs*66 0.20 TCGA-55-8085-01 13 38320455 38320455 G T TRPC4 Missense_Mutation p.H172Q 0.23 deleterious(0) probably_damaging(1) TCGA-55-8085-01 13 52602505 52602505 G T ALG11 Missense_Mutation p.G420W 0.22 deleterious(0) probably_damaging(1) TCGA-55-8085-01 14 100795084 100795084 G A SLC25A47 Missense_Mutation p.E117K 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-55-8085-01 14 102689306 102689306 C T WDR20 3'UTR 0.39 TCGA-55-8085-01 14 106174848 106174848 T A IGHA1 Missense_Mutation p.N52I 0.45 deleterious(0) probably_damaging(0.925) TCGA-55-8085-01 14 20767011 20767011 G C TTC5 Missense_Mutation p.S195C 0.21 tolerated(0.19) benign(0.003) TCGA-55-8085-01 14 21423997 21423997 G T RNASE2 Missense_Mutation p.G23C 0.19 tolerated(0.1) benign(0.028) TCGA-55-8085-01 14 22279931 22279931 G T TRAV9-1 Silent p.V40V 0.25 TCGA-55-8085-01 14 23816880 23816880 C A SLC22A17 Silent p.S335S 0.37 TCGA-55-8085-01 14 38064239 38064239 G A FOXA1 5'UTR 0.22 TCGA-55-8085-01 14 52481083 52481083 C T NID2 Silent p.Q1114Q 0.15 TCGA-55-8085-01 14 67817333 67817333 G C ATP6V1D Missense_Mutation p.D78E 0.25 tolerated(0.09) benign(0.327) TCGA-55-8085-01 14 79181293 79181293 C T NRXN3 Missense_Mutation p.R246C 0.31 deleterious(0) probably_damaging(0.994) TCGA-55-8085-01 14 79432583 79432583 G T NRXN3 Missense_Mutation p.D498Y 0.28 deleterious(0) probably_damaging(0.993) TCGA-55-8085-01 14 91389530 91389530 G A RPS6KA5 Missense_Mutation p.A210V 0.08 deleterious(0.03) possibly_damaging(0.837) TCGA-55-8085-01 14 92336602 92336602 C T FBLN5 Missense_Mutation p.R438Q 0.25 deleterious(0.01) benign(0.019) TCGA-55-8085-01 14 94008862 94008862 G T UNC79 Silent p.R348R 0.19 TCGA-55-8085-01 15 25451431 25451431 A T SNORD115-20 RNA 0.27 TCGA-55-8085-01 15 34130000 34130000 C A RYR3 Missense_Mutation p.S3940Y 0.35 probably_damaging(0.99) TCGA-55-8085-01 15 40093671 40093671 C A GPR176 Nonsense_Mutation p.E404* 0.23 TCGA-55-8085-01 15 40093672 40093672 C A GPR176 Missense_Mutation p.K403N 0.24 deleterious_low_confidence(0.02) benign(0.236) TCGA-55-8085-01 15 40855098 40855098 G A C15orf57 Silent p.F48F 0.28 TCGA-55-8085-01 15 50168528 50168528 G A ATP8B4 Nonsense_Mutation p.Q992* 0.18 TCGA-55-8085-01 15 52844200 52844200 G A ARPP19 Silent p.D90D 0.18 TCGA-55-8085-01 15 76072677 76072677 C G RN7SL319P 5'Flank 0.25 TCGA-55-8085-01 15 79750721 79750721 C T KIAA1024 Silent p.L744L 0.30 TCGA-55-8085-01 15 97327391 97327391 C T SPATA8 Missense_Mutation p.S33L 0.28 deleterious_low_confidence(0) possibly_damaging(0.519) TCGA-55-8085-01 16 1261987 1261987 C T CACNA1H Silent p.I1536I 0.24 TCGA-55-8085-01 16 1538361 1538361 G T PTX4 Silent p.G36G 0.32 TCGA-55-8085-01 16 20748340 20748340 C T THUMPD1 Silent p.Q308Q 0.30 TCGA-55-8085-01 16 2549360 2549360 T A TBC1D24 Missense_Mutation p.F382Y 0.25 deleterious(0.04) possibly_damaging(0.86) TCGA-55-8085-01 16 30410369 30410369 G C ZNF48 Missense_Mutation p.G600R 0.04 tolerated(0.06) possibly_damaging(0.557) TCGA-55-8085-01 16 3350590 3350590 T C TIGD7 Missense_Mutation p.T9A 0.31 deleterious(0.02) possibly_damaging(0.581) TCGA-55-8085-01 16 50138915 50138915 G A HEATR3 Missense_Mutation p.M662I 0.20 tolerated(0.26) benign(0.055) TCGA-55-8085-01 16 58550242 58550242 G A SETD6 Missense_Mutation p.M157I 0.56 deleterious(0.02) probably_damaging(0.982) TCGA-55-8085-01 16 67964436 67964436 A G CTRL Missense_Mutation p.L125P 0.25 deleterious(0) probably_damaging(0.999) TCGA-55-8085-01 16 89789920 89789920 G T ZNF276 Missense_Mutation p.R270L 0.17 tolerated(0.33) benign(0.003) TCGA-55-8085-01 17 11593535 11593535 G A DNAH9 Missense_Mutation p.E1466K 0.35 possibly_damaging(0.901) TCGA-55-8085-01 17 18907093 18907093 G A FAM83G Nonsense_Mutation p.Q88* 0.25 TCGA-55-8085-01 17 30814988 30814988 C T CDK5R1 Missense_Mutation p.S117F 0.22 tolerated(0.09) benign(0.123) TCGA-55-8085-01 17 35506883 35506883 T A ACACA Missense_Mutation p.I1862F 0.23 deleterious(0) possibly_damaging(0.821) TCGA-55-8085-01 17 35837015 35837015 C T TADA2A Silent p.I420I 0.25 TCGA-55-8085-01 17 38978636 38978636 C T KRT10 Missense_Mutation p.G68R 0.32 tolerated_low_confidence(0.19) unknown(0) TCGA-55-8085-01 17 49068000 49068000 C G SPAG9 Missense_Mutation p.E810Q 0.34 deleterious(0.01) probably_damaging(0.987) TCGA-55-8085-01 17 5456765 5456765 A G NLRP1 Silent p.S823S 0.58 TCGA-55-8085-01 17 56676546 56676546 G T TEX14 Silent p.S726S 0.25 TCGA-55-8085-01 17 66033295 66033295 G A KPNA2 Missense_Mutation p.R16K 0.28 tolerated(1) benign(0.042) TCGA-55-8085-01 17 71189308 71189308 G T COG1 Nonsense_Mutation p.E34* 0.50 TCGA-55-8085-01 17 72916222 72916222 C A USH1G Missense_Mutation p.G237W 0.35 deleterious(0) probably_damaging(1) TCGA-55-8085-01 17 7576855 7576855 G A TP53 Nonsense_Mutation p.Q331* 0.27 TCGA-55-8085-01 17 76203046 76203046 C T AFMID 3'UTR 0.32 TCGA-55-8085-01 17 79813069 79813069 G A P4HB Silent p.D191D 0.28 TCGA-55-8085-01 17 80194073 80194073 C G SLC16A3 Missense_Mutation p.I63M 0.29 deleterious(0) probably_damaging(0.918) TCGA-55-8085-01 18 25591815 25591815 C T CDH2 Missense_Mutation p.V181I 0.26 deleterious(0.01) possibly_damaging(0.605) TCGA-55-8085-01 18 29052358 29052358 G T DSG3 Missense_Mutation p.G670V 0.23 deleterious(0.01) probably_damaging(0.92) TCGA-55-8085-01 18 29648259 29648259 A T RNF125 Splice_Site p.X205_splice 0.31 TCGA-55-8085-01 18 29648260 29648260 G T RNF125 Splice_Site p.X205_splice 0.31 TCGA-55-8085-01 18 31709890 31709890 C A NOL4 Missense_Mutation p.G120V 0.15 deleterious(0) probably_damaging(1) TCGA-55-8085-01 18 31803013 31803013 C T NOL4 Missense_Mutation p.E69K 0.20 tolerated(0.53) probably_damaging(0.985) TCGA-55-8085-01 18 61570483 61570483 A G SERPINB2 Missense_Mutation p.I398V 0.27 deleterious(0) possibly_damaging(0.817) TCGA-55-8085-01 18 67781757 67781757 C G RTTN Missense_Mutation p.V1203L 0.26 tolerated(0.13) possibly_damaging(0.581) TCGA-55-8085-01 18 74611109 74611109 C T ZNF236 Missense_Mutation p.R607C 0.25 deleterious(0) probably_damaging(0.915) TCGA-55-8085-01 19 10602292 10602292 C A KEAP1 Missense_Mutation p.G429V 0.36 deleterious(0) probably_damaging(0.963) TCGA-55-8085-01 19 15338810 15338810 G A EPHX3 Nonsense_Mutation p.Q240* 0.39 TCGA-55-8085-01 19 17394674 17394674 G T ANKLE1 Silent p.L367L 0.06 TCGA-55-8085-01 19 18092536 18092536 G A KCNN1 Missense_Mutation p.G173R 0.36 deleterious(0.01) probably_damaging(0.967) TCGA-55-8085-01 19 23329254 23329254 C G ZNF730 Missense_Mutation p.H470D 0.21 deleterious(0) probably_damaging(0.965) TCGA-55-8085-01 19 31768106 31768106 G C TSHZ3 Missense_Mutation p.P865A 0.47 deleterious(0.02) benign(0.304) TCGA-55-8085-01 19 33450903 33450903 G C CEP89 Missense_Mutation p.Q70E 0.17 deleterious(0.01) possibly_damaging(0.826) TCGA-55-8085-01 19 36387393 36387393 C T NFKBID Silent p.E102E 0.39 TCGA-55-8085-01 19 3783906 3783906 C A MATK Missense_Mutation p.G164V 0.33 tolerated(0.11) possibly_damaging(0.678) TCGA-55-8085-01 19 43259361 43259361 T A PSG8 Missense_Mutation p.D256V 0.35 deleterious(0.01) probably_damaging(0.992) TCGA-55-8085-01 19 46278290 46278290 C G DMPK Missense_Mutation p.E393D 0.42 tolerated(0.1) benign(0.108) TCGA-55-8085-01 19 52496734 52496734 C T ZNF615 Missense_Mutation p.R543Q 0.36 tolerated(0.06) probably_damaging(0.999) TCGA-55-8085-01 19 58762760 58762760 G C ZNF544 Intron 0.38 TCGA-55-8085-01 19 6416554 6416554 C G KHSRP Missense_Mutation p.G479R 0.51 deleterious(0.01) benign(0.263) TCGA-55-8085-01 1 107979316 107979316 C T NTNG1 Missense_Mutation p.H429Y 0.26 tolerated(0.3) benign(0) TCGA-55-8085-01 1 110085925 110085925 T A GPR61 Missense_Mutation p.M94K 0.23 deleterious(0) probably_damaging(0.998) TCGA-55-8085-01 1 114976307 114976307 C G TRIM33 Missense_Mutation p.E324D 0.17 tolerated(0.25) benign(0.056) TCGA-55-8085-01 1 11850742 11850742 G A MTHFR Missense_Mutation p.P656S 0.38 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-55-8085-01 1 14104921 14104921 G C PRDM2 Missense_Mutation p.E211Q 0.29 benign(0.138) TCGA-55-8085-01 1 14105749 14105749 T G PRDM2 Missense_Mutation p.Y487D 0.21 probably_damaging(1) TCGA-55-8085-01 1 150131625 150131625 G C PLEKHO1 Silent p.L379L 0.24 TCGA-55-8085-01 1 150938988 150938988 G A CERS2 Silent p.L322L 0.17 TCGA-55-8085-01 1 152282528 152282528 C G FLG Missense_Mutation p.E1612Q 0.18 benign(0.403) TCGA-55-8085-01 1 153362696 153362696 G A S100A8 Silent p.F55F 0.16 TCGA-55-8085-01 1 156263999 156263999 G A C1orf85 Missense_Mutation p.P203L 0.19 deleterious(0.03) benign(0.287) TCGA-55-8085-01 1 158151443 158151443 T C CD1D Missense_Mutation p.I87T 0.36 tolerated(0.12) benign(0.003) TCGA-55-8085-01 1 158261969 158261969 C A CD1C Missense_Mutation p.L142M 0.45 tolerated(0.17) benign(0.283) TCGA-55-8085-01 1 158435391 158435391 G C OR10K1 Missense_Mutation p.V14L 0.22 tolerated(1) benign(0) TCGA-55-8085-01 1 158604466 158604466 C G SPTA1 Splice_Site p.X1811_splice 0.20 TCGA-55-8085-01 1 162470836 162470836 T G UHMK1 Nonsense_Mutation p.L232* 0.18 TCGA-55-8085-01 1 165183039 165183039 C A LMX1A Missense_Mutation p.D170Y 0.45 deleterious(0) probably_damaging(0.927) TCGA-55-8085-01 1 16757852 16757852 G T SPATA21 Missense_Mutation p.N5K 0.25 tolerated_low_confidence(0.12) benign(0.001) TCGA-55-8085-01 1 167849767 167849771 CATAG TATT ADCY10 Frame_Shift_Del p.A366Efs*2 0.11 TCGA-55-8085-01 1 170688909 170688909 G T PRRX1 Missense_Mutation p.R95L 0.36 deleterious(0) probably_damaging(0.988) TCGA-55-8085-01 1 180022966 180022966 G C CEP350 Missense_Mutation p.E1691Q 0.20 probably_damaging(0.999) TCGA-55-8085-01 1 197298070 197298070 A G CRB1 Missense_Mutation p.N197D 0.25 deleterious(0.01) probably_damaging(0.98) TCGA-55-8085-01 1 197886867 197886867 C G LHX9 5'UTR 0.26 TCGA-55-8085-01 1 207245606 207245606 C T PFKFB2 Silent p.L470L 0.16 TCGA-55-8085-01 1 208225689 208225689 C G PLXNA2 Missense_Mutation p.Q992H 0.11 tolerated(0.31) probably_damaging(0.991) TCGA-55-8085-01 1 21036137 21036137 G A KIF17 Missense_Mutation p.A222V 0.23 tolerated(0.17) benign(0.038) TCGA-55-8085-01 1 216850808 216850808 C T ESRRG Missense_Mutation p.D33N 0.32 deleterious_low_confidence(0.01) benign(0.157) TCGA-55-8085-01 1 222715408 222715408 C A HHIPL2 Missense_Mutation p.G355V 0.20 deleterious(0) probably_damaging(0.977) TCGA-55-8085-01 1 225142701 225142701 C G DNAH14 Missense_Mutation p.P40A 0.24 tolerated(0.47) benign(0.007) TCGA-55-8085-01 1 227842533 227842533 A T ZNF678 Silent p.S194S 0.12 TCGA-55-8085-01 1 237060367 237060367 C G MTR Missense_Mutation p.F1220L 0.19 tolerated(0.08) possibly_damaging(0.575) TCGA-55-8085-01 1 240370489 240370489 C T FMN2 Nonsense_Mutation p.R793* 0.16 TCGA-55-8085-01 1 248436658 248436658 G A OR2T33 Silent p.D153D 0.38 TCGA-55-8085-01 1 32503504 32503504 G A KHDRBS1 Missense_Mutation p.R325K 0.20 deleterious(0.01) benign(0.267) TCGA-55-8085-01 1 33354703 33354703 C G HPCA Silent p.V68V 0.31 TCGA-55-8085-01 1 34330332 34330332 G T HMGB4 Silent p.G180G 0.25 TCGA-55-8085-01 1 42049030 42049030 T A HIVEP3 Missense_Mutation p.E480V 0.30 probably_damaging(0.998) TCGA-55-8085-01 1 43233241 43233241 C T C1orf50 Silent p.T47T 0.11 TCGA-55-8085-01 1 68915577 68915577 C A RPE65 Splice_Site p.X4_splice 0.32 TCGA-55-8085-01 1 70385304 70385304 C A LRRC7 Intron 0.36 TCGA-55-8085-01 1 8716296 8716296 G A RERE Nonsense_Mutation p.R21* 0.18 TCGA-55-8085-01 1 91845790 91845790 G C HFM1 Missense_Mutation p.L293V 0.26 deleterious(0.04) probably_damaging(0.954) TCGA-55-8085-01 1 948908 948908 C T ISG15 5'UTR 0.10 TCGA-55-8085-01 20 10621789 10621789 G A JAG1 Missense_Mutation p.S1007L 0.22 tolerated(0.08) benign(0.002) TCGA-55-8085-01 20 1961099 1961099 C T PDYN Missense_Mutation p.R212Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-55-8085-01 20 34776403 34776403 C G EPB41L1 Missense_Mutation p.I336M 0.41 deleterious(0) probably_damaging(1) TCGA-55-8085-01 20 34817321 34817321 G C EPB41L1 3'UTR 0.21 TCGA-55-8085-01 20 34817322 34817322 G T EPB41L1 3'UTR 0.19 TCGA-55-8085-01 20 44054310 44054310 C T PIGT Silent p.N527N 0.24 TCGA-55-8085-01 20 61430982 61430982 G T MRGBP Missense_Mutation p.R201L 0.22 deleterious(0) probably_damaging(0.972) TCGA-55-8085-01 21 11020880 11020880 G A BAGE2 RNA 0.09 TCGA-55-8085-01 21 44272435 44272435 C T WDR4 Splice_Site p.X326_splice 0.20 TCGA-55-8085-01 21 45113122 45113122 G A RRP1B Missense_Mutation p.R712Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-55-8085-01 21 45876767 45876767 G A LRRC3 Silent p.P80P 0.19 TCGA-55-8085-01 22 19865647 19865647 C A TXNRD2 Missense_Mutation p.G471C 0.32 deleterious(0) probably_damaging(1) TCGA-55-8085-01 22 21153504 21153504 C T PI4KA Silent p.L627L 0.37 TCGA-55-8085-01 22 23040815 23040815 C G IGLV2-23 Missense_Mutation p.S88C 0.26 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-55-8085-01 22 42174743 42174743 C A MEI1 Silent p.L914L 0.29 TCGA-55-8085-01 22 45723878 45723878 G C FAM118A Silent p.L152L 0.27 TCGA-55-8085-01 22 45802379 45802379 C T SMC1B Missense_Mutation p.A193T 0.16 tolerated(0.2) possibly_damaging(0.54) TCGA-55-8085-01 2 100900820 100900820 G A LONRF2 Silent p.I735I 0.36 TCGA-55-8085-01 2 100916266 100916266 C A LONRF2 Missense_Mutation p.A394S 0.26 tolerated(0.65) benign(0.039) TCGA-55-8085-01 2 108618433 108618433 G A SLC5A7 Silent p.K226K 0.26 TCGA-55-8085-01 2 128324327 128324327 C A MYO7B Missense_Mutation p.P132Q 0.20 deleterious(0) probably_damaging(1) TCGA-55-8085-01 2 130897886 130897886 G A CCDC74B Nonsense_Mutation p.Q248* 0.22 TCGA-55-8085-01 2 170027160 170027160 C T LRP2 Missense_Mutation p.E3761K 0.29 probably_damaging(1) TCGA-55-8085-01 2 193059320 193059320 G T TMEFF2 5'UTR 0.33 TCGA-55-8085-01 2 199011543 199011543 A T PLCL1 Missense_Mutation p.I1049L 0.21 tolerated(1) benign(0) TCGA-55-8085-01 2 202001078 202001078 C T CFLAR Intron 0.21 TCGA-55-8085-01 2 203834763 203834763 G T CARF Missense_Mutation p.V359L 0.30 tolerated(0.35) benign(0.203) TCGA-55-8085-01 2 21227217 21227217 G T APOB Missense_Mutation p.P4004Q 0.23 possibly_damaging(0.844) TCGA-55-8085-01 2 225338975 225338975 G A CUL3 Missense_Mutation p.T765I 0.25 tolerated(0.37) benign(0.009) TCGA-55-8085-01 2 227919419 227919419 G A COL4A4 Silent p.P917P 0.27 TCGA-55-8085-01 2 234916745 234916745 A T TRPM8 Nonsense_Mutation p.K1088* 0.27 TCGA-55-8085-01 2 242757740 242757740 G A NEU4 Nonsense_Mutation p.W287* 0.28 TCGA-55-8085-01 2 24535184 24535184 C T ITSN2 Missense_Mutation p.M83I 0.29 deleterious(0) probably_damaging(0.991) TCGA-55-8085-01 2 24550935 24550935 G A ITSN2 Missense_Mutation p.P6L 0.24 deleterious(0.03) benign(0.085) TCGA-55-8085-01 2 30379507 30379507 C T YPEL5 5'UTR 0.25 TCGA-55-8085-01 2 60688979 60688979 C G BCL11A Silent p.A356A 0.36 TCGA-55-8085-01 2 66691269 66691269 C T MEIS1 Missense_Mutation p.T220M 0.30 tolerated(0.07) benign(0.336) TCGA-55-8085-01 2 69093162 69093162 A - BMP10 Frame_Shift_Del p.S292Rfs*11 0.19 TCGA-55-8085-01 2 80801392 80801392 G T CTNNA2 Missense_Mutation p.V616L 0.25 deleterious(0.05) benign(0.051) TCGA-55-8085-01 2 97370452 97370452 C A LMAN2L 3'Flank 0.36 TCGA-55-8085-01 3 100438863 100438863 G A TFG Missense_Mutation p.A77T 0.23 deleterious(0) probably_damaging(0.988) TCGA-55-8085-01 3 119134219 119134219 C G ARHGAP31 Missense_Mutation p.S1148C 0.53 deleterious(0) possibly_damaging(0.838) TCGA-55-8085-01 3 119211176 119211176 G A POGLUT1 Missense_Mutation p.C357Y 0.38 deleterious(0.02) possibly_damaging(0.604) TCGA-55-8085-01 3 119305492 119305492 G T ADPRH Missense_Mutation p.W220L 0.47 deleterious(0.02) possibly_damaging(0.518) TCGA-55-8085-01 3 134851714 134851714 G A EPHB1 Missense_Mutation p.D374N 0.39 deleterious(0.03) benign(0.073) TCGA-55-8085-01 3 148562525 148562525 C A CPB1 Missense_Mutation p.P250H 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-55-8085-01 3 155861079 155861079 C T KCNAB1 Intron 0.30 TCGA-55-8085-01 3 160395202 160395202 C G ARL14 Nonsense_Mutation p.S23* 0.44 TCGA-55-8085-01 3 172351449 172351449 T A NCEH1 Missense_Mutation p.D388V 0.40 deleterious(0) probably_damaging(1) TCGA-55-8085-01 3 183777424 183777424 C A HTR3C Silent p.L307L 0.40 TCGA-55-8085-01 3 185332511 185332511 C T SENP2 Missense_Mutation p.L365F 0.29 tolerated(0.49) benign(0.386) TCGA-55-8085-01 3 19295165 19295165 C A KCNH8 Silent p.A32A 0.27 TCGA-55-8085-01 3 195925301 195925301 C A ZDHHC19 Missense_Mutation p.Q265H 0.20 tolerated(0.2) benign(0.252) TCGA-55-8085-01 3 196792215 196792215 C T DLG1 Missense_Mutation p.E802K 0.39 deleterious(0) probably_damaging(0.999) TCGA-55-8085-01 3 26751153 26751153 G T LRRC3B 5'UTR 0.31 TCGA-55-8085-01 3 27216195 27216195 C T NEK10 Missense_Mutation p.A879T 0.25 tolerated(0.89) benign(0.007) TCGA-55-8085-01 3 3139591 3139591 G C IL5RA Missense_Mutation p.I224M 0.38 deleterious(0) probably_damaging(0.994) TCGA-55-8085-01 3 38049820 38049820 A C PLCD1 Missense_Mutation p.N668K 0.27 tolerated(1) benign(0.005) TCGA-55-8085-01 3 38049823 38049823 C A PLCD1 Missense_Mutation p.K667N 0.24 tolerated(0.28) benign(0.167) TCGA-55-8085-01 3 41266113 41266113 C T CTNNB1 Missense_Mutation p.S37F 0.15 deleterious(0) probably_damaging(0.962) TCGA-55-8085-01 3 43618533 43618533 C T ANO10 Silent p.R271R 0.28 TCGA-55-8085-01 3 48491562 48491562 G C ATRIP Missense_Mutation p.E123Q 0.28 deleterious(0.01) possibly_damaging(0.638) TCGA-55-8085-01 3 48688477 48688477 G C CELSR3 Missense_Mutation p.S2073C 0.33 deleterious(0) possibly_damaging(0.541) TCGA-55-8085-01 3 48697117 48697117 G C CELSR3 Nonsense_Mutation p.S984* 0.22 TCGA-55-8085-01 3 48697420 48697420 G C CELSR3 Missense_Mutation p.S883C 0.21 deleterious(0) probably_damaging(0.976) TCGA-55-8085-01 3 79067687 79067687 C A ROBO1 Intron 0.38 TCGA-55-8085-01 3 79067688 79067688 C A ROBO1 Intron 0.38 TCGA-55-8085-01 3 8590451 8590451 C T LMCD1 Silent p.G195G 0.29 TCGA-55-8085-01 3 86114773 86114773 G T CADM2 Missense_Mutation p.G363V 0.35 deleterious(0.01) possibly_damaging(0.593) TCGA-55-8085-01 3 97356779 97356779 C A EPHA6 Silent p.G879G 0.23 TCGA-55-8085-01 4 101947147 101947147 C T PPP3CA Missense_Mutation p.E481K 0.17 deleterious(0) possibly_damaging(0.495) TCGA-55-8085-01 4 148968053 148968053 T C ARHGAP10 Silent p.P626P 0.27 TCGA-55-8085-01 4 153897456 153897456 G A FHDC1 Missense_Mutation p.A1005T 0.27 tolerated(0.12) benign(0) TCGA-55-8085-01 4 16597475 16597475 G C LDB2 Missense_Mutation p.R87G 0.28 deleterious(0) probably_damaging(0.999) TCGA-55-8085-01 4 174292579 174292579 C T SAP30 Silent p.N82N 0.10 TCGA-55-8085-01 4 20555556 20555556 T C SLIT2 Missense_Mutation p.L897S 0.28 deleterious(0) probably_damaging(1) TCGA-55-8085-01 4 41266139 41266139 G A UCHL1 Silent p.P182P 0.21 TCGA-55-8085-01 4 55136900 55136900 G C PDGFRA Missense_Mutation p.E408Q 0.24 tolerated(0.75) benign(0.005) TCGA-55-8085-01 4 69973850 69973850 C A UGT2B7 Missense_Mutation p.H374N 0.27 deleterious(0) probably_damaging(0.965) TCGA-55-8085-01 4 96761323 96761323 C A PDHA2 Missense_Mutation p.R8S 0.26 tolerated(0.19) benign(0.007) TCGA-55-8085-01 5 127681175 127681175 C T FBN2 Missense_Mutation p.A1031T 0.05 deleterious(0.03) benign(0.344) TCGA-55-8085-01 5 140594670 140594670 T A PCDHB13 Silent p.A325A 0.29 TCGA-55-8085-01 5 147040594 147040594 C A JAKMIP2 Missense_Mutation p.G182W 0.23 deleterious(0) probably_damaging(0.999) TCGA-55-8085-01 5 150422188 150422188 C T TNIP1 Silent p.V349V 0.33 TCGA-55-8085-01 5 156535950 156535950 C A HAVCR2 Silent p.L15L 0.27 TCGA-55-8085-01 5 15928333 15928333 G T FBXL7 Missense_Mutation p.W154C 0.30 deleterious(0) probably_damaging(0.998) TCGA-55-8085-01 5 176311087 176311087 C A HK3 Missense_Mutation p.G636C 0.18 deleterious(0) probably_damaging(1) TCGA-55-8085-01 5 176562677 176562677 C T NSD1 Silent p.A191A 0.24 TCGA-55-8085-01 5 176728947 176728947 C A RAB24 Missense_Mutation p.A176S 0.21 tolerated(0.84) benign(0.001) TCGA-55-8085-01 5 180481246 180481246 C T BTNL9 Silent p.L298L 0.27 TCGA-55-8085-01 5 54594436 54594436 C T DHX29 Missense_Mutation p.D82N 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.743) TCGA-55-8085-01 5 71489974 71489974 T G MAP1B Missense_Mutation p.I264M 0.24 unknown(0) TCGA-55-8085-01 5 71490076 71490076 C A MAP1B Silent p.I298I 0.14 TCGA-55-8085-01 6 131937070 131937070 T G MED23 Missense_Mutation p.N285H 0.37 tolerated(0.13) probably_damaging(0.925) TCGA-55-8085-01 6 132939221 132939221 C A TAAR2 Missense_Mutation p.V42F 0.24 deleterious(0.02) benign(0.155) TCGA-55-8085-01 6 148865628 148865628 A C SASH1 Missense_Mutation p.S1008R 0.43 deleterious_low_confidence(0.05) benign(0.143) TCGA-55-8085-01 6 161056216 161056216 C A LPA Silent p.G338G 0.03 TCGA-55-8085-01 6 26405815 26405815 C A BTN3A1 Silent p.A8A 0.05 TCGA-55-8085-01 6 26509523 26509523 C A BTN1A1 3'UTR 0.50 TCGA-55-8085-01 6 28214806 28214806 G C ZKSCAN4 Missense_Mutation p.S240C 0.39 deleterious(0.01) probably_damaging(0.975) TCGA-55-8085-01 6 30113867 30113867 G T TRIM40 Splice_Site p.X147_splice 0.52 TCGA-55-8085-01 6 3085579 3085579 G C RIPK1 Missense_Mutation p.E259Q 0.40 deleterious(0.03) possibly_damaging(0.817) TCGA-55-8085-01 6 31914934 31914934 G A CFB Missense_Mutation p.R652Q 0.22 tolerated(0.14) probably_damaging(0.989) TCGA-55-8085-01 6 36712921 36712921 T A CPNE5 Silent p.A445A 0.56 TCGA-55-8085-01 6 41168825 41168825 C A TREML2 5'UTR 0.14 TCGA-55-8085-01 6 43230550 43230550 C T TTBK1 Missense_Mutation p.S483L 0.24 benign(0.409) TCGA-55-8085-01 6 55223839 55223839 G T GFRAL Silent p.T285T 0.52 TCGA-55-8085-01 6 75804857 75804857 C - COL12A1 Frame_Shift_Del p.K2873Sfs*16 0.27 TCGA-55-8085-01 6 80626436 80626436 A C ELOVL4 Silent p.A278A 0.43 TCGA-55-8085-01 7 100732822 100732822 G T TRIM56 Silent p.G743G 0.18 TCGA-55-8085-01 7 106924162 106924162 C G COG5 Missense_Mutation p.L474F 0.29 deleterious(0.01) probably_damaging(0.976) TCGA-55-8085-01 7 107408050 107408050 C T SLC26A3 Missense_Mutation p.G749R 0.21 deleterious(0.03) probably_damaging(0.952) TCGA-55-8085-01 7 123594224 123594224 G T SPAM1 Silent p.L200L 0.30 TCGA-55-8085-01 7 139791643 139791643 C A KDM7A Missense_Mutation p.A898S 0.21 tolerated(0.2) probably_damaging(0.918) TCGA-55-8085-01 7 143140739 143140739 C G TAS2R60 Missense_Mutation p.S65C 0.26 deleterious(0) possibly_damaging(0.493) TCGA-55-8085-01 7 143141101 143141101 C A TAS2R60 Silent p.R186R 0.06 TCGA-55-8085-01 7 143175513 143175513 C G TAS2R41 Missense_Mutation p.S183C 0.13 deleterious(0.03) possibly_damaging(0.895) TCGA-55-8085-01 7 148801719 148801719 G A ZNF425 Missense_Mutation p.S415L 0.20 tolerated(0.15) benign(0.227) TCGA-55-8085-01 7 149129844 149129844 G T ZNF777 Missense_Mutation p.Q507K 0.30 tolerated(0.19) benign(0.03) TCGA-55-8085-01 7 24881967 24881967 G A OSBPL3 Silent p.I444I 0.18 TCGA-55-8085-01 7 27285816 27285816 C A EVX1 Nonsense_Mutation p.Y332* 0.45 TCGA-55-8085-01 7 33014296 33014296 G T FKBP9 Missense_Mutation p.A97S 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-55-8085-01 7 44713460 44713460 G C OGDH Missense_Mutation p.Q236H 0.17 deleterious(0.01) benign(0.372) TCGA-55-8085-01 7 66274043 66274043 C T KCTD7 Silent p.L416L 0.31 TCGA-55-8085-01 7 80457942 80457942 G C SEMA3C Missense_Mutation p.L75V 0.23 tolerated(0.22) benign(0.041) TCGA-55-8085-01 7 82595357 82595357 G A PCLO Silent p.L1249L 0.22 TCGA-55-8085-01 7 87757974 87757974 G A ADAM22 Missense_Mutation p.V246M 0.25 deleterious(0) probably_damaging(0.993) TCGA-55-8085-01 7 92027963 92027963 A T ANKIB1 Silent p.P990P 0.23 TCGA-55-8085-01 7 94180652 94180652 A T CASD1 Silent p.V606V 0.10 TCGA-55-8085-01 8 10387106 10387106 C A PRSS55 Missense_Mutation p.Q82K 0.31 deleterious(0.02) possibly_damaging(0.886) TCGA-55-8085-01 8 11418808 11418808 C T BLK Intron 0.50 TCGA-55-8085-01 8 145009223 145009223 C T PLEC Missense_Mutation p.A398T 0.19 unknown(0) TCGA-55-8085-01 8 145659116 145659116 C T TONSL Missense_Mutation p.M1138I 0.26 deleterious(0.03) possibly_damaging(0.719) TCGA-55-8085-01 8 145659143 145659143 C G TONSL Splice_Site p.X1130_splice 0.26 TCGA-55-8085-01 8 26623629 26623629 C T ADRA1A Intron 0.21 TCGA-55-8085-01 8 31498176 31498176 T C NRG1 Missense_Mutation p.S79P 0.27 deleterious(0.02) possibly_damaging(0.559) TCGA-55-8085-01 8 42178287 42178287 T C IKBKB Missense_Mutation p.M538T 0.17 tolerated(0.12) probably_damaging(0.989) TCGA-55-8085-01 8 42407835 42407835 C G SMIM19 3'UTR 0.21 TCGA-55-8085-01 8 72964803 72964803 C A RP11-383H13.1 3'UTR 0.43 TCGA-55-8085-01 8 72975136 72975136 C T TRPA1 Missense_Mutation p.M235I 0.22 tolerated(0.3) benign(0) TCGA-55-8085-01 8 77620235 77620235 C T ZFHX4 Silent p.R1015R 0.47 TCGA-55-8085-01 8 77766976 77766976 C A ZFHX4 Missense_Mutation p.R2607S 0.10 probably_damaging(0.986) TCGA-55-8085-01 8 94797466 94797466 C G TMEM67 Missense_Mutation p.S383C 0.20 deleterious(0) possibly_damaging(0.855) TCGA-55-8085-01 9 102625994 102625994 C A NR4A3 Missense_Mutation p.L587M 0.50 tolerated(0.23) benign(0.023) TCGA-55-8085-01 9 105757654 105757654 G T CYLC2 5'UTR 0.21 TCGA-55-8085-01 9 114151989 114151989 A T KIAA0368 Silent p.G1276G 0.39 TCGA-55-8085-01 9 114919843 114919843 C A SUSD1 Nonsense_Mutation p.E52* 0.30 TCGA-55-8085-01 9 121930355 121930355 G A BRINP1 Silent p.G431G 0.31 TCGA-55-8085-01 9 125329840 125329840 C T OR1L8 Missense_Mutation p.S306N 0.25 tolerated(0.53) benign(0.001) TCGA-55-8085-01 9 131271318 131271318 C T GLE1 Missense_Mutation p.S88F 0.22 deleterious(0.03) possibly_damaging(0.738) TCGA-55-8085-01 9 132869785 132869785 C T GPR107 Missense_Mutation p.H425Y 0.24 deleterious(0.01) probably_damaging(0.995) TCGA-55-8085-01 9 134312026 134312026 C T PRRC2B Nonsense_Mutation p.Q105* 0.28 TCGA-55-8085-01 9 135203894 135203894 C G SETX Missense_Mutation p.E1031Q 0.27 tolerated(0.14) benign(0.028) TCGA-55-8085-01 9 138825275 138825275 T C UBAC1 Missense_Mutation p.R397G 0.26 deleterious(0) probably_damaging(0.949) TCGA-55-8085-01 9 139137425 139137425 G A QSOX2 Silent p.T75T 0.31 TCGA-55-8085-01 9 140079461 140079461 C A ANAPC2 Missense_Mutation p.G318C 0.24 tolerated(0.12) benign(0.377) TCGA-55-8085-01 9 37441498 37441498 C G ZBTB5 Missense_Mutation p.E351Q 0.23 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-55-8085-01 9 74365118 74365118 C A TMEM2 Missense_Mutation p.A58S 0.35 tolerated_low_confidence(0.05) benign(0.035) TCGA-55-8085-01 9 74365119 74365119 C T TMEM2 Silent p.R57R 0.35 TCGA-55-8085-01 9 95637323 95637323 C T ZNF484 Intron 0.20 TCGA-55-8085-01 X 107330987 107330987 C T PSMD10 Silent p.L152L 0.50 TCGA-55-8085-01 X 114357725 114357725 C A LRCH2 Missense_Mutation p.G627V 0.62 tolerated(0.13) possibly_damaging(0.489) TCGA-55-8085-01 X 114357726 114357726 C A LRCH2 Missense_Mutation p.G627W 0.62 deleterious(0.01) probably_damaging(0.944) TCGA-55-8085-01 X 125686504 125686504 C A DCAF12L1 Missense_Mutation p.A30S 0.73 tolerated(0.17) benign(0.011) TCGA-55-8085-01 X 129281760 129281760 G A AIFM1 Silent p.A147A 0.41 TCGA-55-8085-01 X 130219591 130219591 C T ARHGAP36 Silent p.L329L 0.52 TCGA-55-8085-01 X 14627123 14627123 C A GLRA2 Silent p.T242T 0.60 TCGA-55-8085-01 X 148062278 148062278 C T AFF2 Missense_Mutation p.S1194L 0.44 deleterious(0) probably_damaging(0.92) TCGA-55-8085-01 X 3242414 3242414 C G MXRA5 Missense_Mutation p.D438H 0.65 tolerated(0.29) benign(0.018) TCGA-55-8085-01 X 54285747 54285747 C G WNK3 Missense_Mutation p.E688Q 0.51 tolerated(0.16) benign(0.222) TCGA-55-8085-01 X 54496521 54496521 G C FGD1 Missense_Mutation p.D343E 0.55 tolerated(0.66) benign(0.028) TCGA-55-8085-01 X 5821438 5821438 C A NLGN4X Missense_Mutation p.W427C 0.41 deleterious(0) probably_damaging(0.999) TCGA-55-8085-01 X 7267983 7267983 C T STS Missense_Mutation p.S478F 0.49 deleterious(0) possibly_damaging(0.707) TCGA-55-8085-01 X 84559421 84559421 G A POF1B Silent p.D498D 0.61 TCGA-55-8087-01 11 124310402 124310402 C T OR8B8 Missense_Mutation p.V194M 0.07 deleterious_low_confidence(0.01) benign(0.2) TCGA-55-8087-01 11 65685011 65685011 G C C11orf68 Silent p.L267L 0.45 TCGA-55-8087-01 12 51566213 51566213 C T TFCP2 5'UTR 0.04 TCGA-55-8087-01 13 41767837 41767837 T C KBTBD7 Missense_Mutation p.H186R 0.12 tolerated(0.43) benign(0.001) TCGA-55-8087-01 14 20586543 20586543 G T OR4K17 Missense_Mutation p.K326N 0.12 deleterious(0) benign(0.444) TCGA-55-8087-01 14 20825207 20825207 C T PARP2 Intron 0.33 TCGA-55-8087-01 14 80669369 80669369 T C DIO2 Missense_Mutation p.D198G 0.08 deleterious(0) possibly_damaging(0.793) TCGA-55-8087-01 15 51693912 51693912 C T GLDN Missense_Mutation p.H384Y 0.33 deleterious(0) probably_damaging(0.974) TCGA-55-8087-01 16 1270391 1270391 G T CACNA1H Missense_Mutation p.Q2153H 0.25 deleterious(0.04) benign(0.004) TCGA-55-8087-01 16 86582173 86582174 - T MTHFSD Frame_Shift_Ins p.T83Nfs*15 0.28 TCGA-55-8087-01 17 29701210 29701210 T C NF1 3'UTR 0.22 TCGA-55-8087-01 17 40094978 40094978 G A TTC25 RNA 0.05 TCGA-55-8087-01 17 61768562 61768562 C - MAP3K3 Frame_Shift_Del p.L470* 0.15 TCGA-55-8087-01 19 50045899 50045899 A T RCN3 Nonsense_Mutation p.K257* 0.09 TCGA-55-8087-01 19 51520452 51520452 G A KLK10 Silent p.V61V 0.53 TCGA-55-8087-01 19 54930464 54930464 G A TTYH1 Missense_Mutation p.A97T 0.29 tolerated(0.06) possibly_damaging(0.778) TCGA-55-8087-01 1 16890488 16890488 C T NBPF1 Missense_Mutation p.G1124R 0.13 deleterious_low_confidence(0.03) benign(0.001) TCGA-55-8087-01 1 172501872 172501872 G T SUCO 5'Flank 0.15 TCGA-55-8087-01 1 183908079 183908079 G A COLGALT2 Missense_Mutation p.P566L 0.04 deleterious(0.03) benign(0.035) TCGA-55-8087-01 1 216465672 216465672 C T USH2A Missense_Mutation p.R562H 0.08 benign(0.179) TCGA-55-8087-01 1 61824896 61824896 G A NFIA Missense_Mutation p.R344H 0.17 tolerated(0.09) probably_damaging(0.91) TCGA-55-8087-01 20 37394972 37394972 G A ACTR5 Missense_Mutation p.G462E 0.34 deleterious(0) probably_damaging(1) TCGA-55-8087-01 20 60900504 60900504 G C LAMA5 Missense_Mutation p.F1799L 0.27 benign(0.024) TCGA-55-8087-01 20 62316891 62316891 G A RTEL1 Missense_Mutation p.D427N 0.20 deleterious(0.03) benign(0.067) TCGA-55-8087-01 22 41282374 41282375 - T XPNPEP3 Frame_Shift_Ins p.D217* 0.23 TCGA-55-8087-01 2 108477232 108477232 T C RGPD4 Missense_Mutation p.L590P 0.45 deleterious(0) possibly_damaging(0.902) TCGA-55-8087-01 2 142237983 142237983 C T LRP1B Missense_Mutation p.E109K 0.08 possibly_damaging(0.635) TCGA-55-8087-01 2 241531447 241531447 G A CAPN10 Missense_Mutation p.V190I 0.08 tolerated(0.57) benign(0.001) TCGA-55-8087-01 3 151155294 151155294 C T IGSF10 Missense_Mutation p.G2352E 0.35 deleterious(0) probably_damaging(0.977) TCGA-55-8087-01 3 183994719 183994719 C T ECE2 Missense_Mutation p.R174C 0.11 deleterious(0) benign(0.393) TCGA-55-8087-01 4 73956679 73956679 C T ANKRD17 Silent p.S2222S 0.37 TCGA-55-8087-01 5 140176801 140176801 C T PCDHA2 Missense_Mutation p.S751L 0.08 deleterious_low_confidence(0.02) benign(0.299) TCGA-55-8087-01 5 16465300 16465300 C A ZNF622 Missense_Mutation p.V159L 0.43 tolerated(0.74) benign(0.04) TCGA-55-8087-01 7 116339264 116339264 G A MET Silent p.Q42Q 0.11 TCGA-55-8087-01 7 142658923 142658923 G A KEL Missense_Mutation p.R14C 0.06 tolerated_low_confidence(0.18) benign(0.083) TCGA-55-8087-01 7 15666509 15666509 G A MEOX2 Silent p.N184N 0.33 TCGA-55-8087-01 7 6485624 6485624 G A DAGLB Silent p.V69V 0.41 TCGA-55-8087-01 8 97312064 97312064 C T PTDSS1 Missense_Mutation p.A248V 0.35 tolerated(0.2) benign(0.345) TCGA-55-8087-01 9 6014681 6014683 AAT - RANBP6 In_Frame_Del p.I309del 0.11 TCGA-55-8087-01 X 118797571 118797571 G A SEPT6 Missense_Mutation p.A72V 0.41 deleterious(0.04) benign(0.009) TCGA-55-8087-01 X 32430029 32430029 G A DMD Missense_Mutation p.A1358V 0.35 probably_damaging(0.916) TCGA-55-8089-01 10 102049824 102049824 G C PKD2L1 Nonsense_Mutation p.S733* 0.18 TCGA-55-8089-01 10 103572872 103572872 C A MGEA5 Missense_Mutation p.W88C 0.12 deleterious(0) probably_damaging(0.997) TCGA-55-8089-01 10 104263972 104263972 T A SUFU Silent p.T21T 0.23 TCGA-55-8089-01 10 105452860 105452860 G C SH3PXD2A Intron 0.24 TCGA-55-8089-01 10 105642414 105642414 C A OBFC1 3'UTR 0.14 TCGA-55-8089-01 10 105798213 105798213 G A COL17A1 Silent p.I1007I 0.16 TCGA-55-8089-01 10 105883587 105883587 C G SFR1 Nonsense_Mutation p.S84* 0.12 TCGA-55-8089-01 10 112764363 112764363 G T SHOC2 Splice_Site p.X325_splice 0.12 TCGA-55-8089-01 10 113920366 113920366 G A GPAM Silent p.I585I 0.20 TCGA-55-8089-01 10 116621019 116621019 G C FAM160B1 Missense_Mutation p.Q706H 0.15 tolerated(0.13) benign(0.092) TCGA-55-8089-01 10 117856245 117856245 G A GFRA1 Silent p.C267C 0.09 TCGA-55-8089-01 10 118368599 118368599 G A PNLIPRP1 Missense_Mutation p.D459N 0.12 tolerated(0.5) benign(0.002) TCGA-55-8089-01 10 118439187 118439187 G C HSPA12A Missense_Mutation p.F371L 0.12 tolerated(0.06) possibly_damaging(0.723) TCGA-55-8089-01 10 118896029 118896029 C A VAX1 Missense_Mutation p.R128L 0.24 deleterious(0.01) unknown(0) TCGA-55-8089-01 10 120801812 120801812 C A EIF3A Missense_Mutation p.D1074Y 0.13 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-55-8089-01 10 1229064 1229064 C A ADARB2 3'UTR 0.17 TCGA-55-8089-01 10 124742393 124742393 C G PSTK Missense_Mutation p.Q121E 0.12 tolerated(0.09) probably_damaging(0.996) TCGA-55-8089-01 10 125769714 125769714 C A CHST15 Missense_Mutation p.R546M 0.16 deleterious(0) possibly_damaging(0.469) TCGA-55-8089-01 10 125798090 125798090 G A CHST15 Silent p.F377F 0.10 TCGA-55-8089-01 10 127530383 127530383 G A DHX32 Missense_Mutation p.S491L 0.23 deleterious(0) possibly_damaging(0.498) TCGA-55-8089-01 10 128797638 128797638 G T DOCK1 Missense_Mutation p.W263L 0.07 deleterious(0) benign(0.307) TCGA-55-8089-01 10 129152980 129152980 G T DOCK1 Missense_Mutation p.W1070L 0.15 deleterious(0) possibly_damaging(0.641) TCGA-55-8089-01 10 129897489 129897489 T G MKI67 Silent p.R3246R 0.14 TCGA-55-8089-01 10 129914094 129914094 C T MKI67 Missense_Mutation p.R193K 0.09 tolerated(0.27) benign(0.158) TCGA-55-8089-01 10 13378248 13378248 C T SEPHS1 Missense_Mutation p.D134N 0.19 deleterious(0.02) benign(0.035) TCGA-55-8089-01 10 15089213 15089213 C G OLAH 5'UTR 0.38 TCGA-55-8089-01 10 18242465 18242465 T C SLC39A12 Missense_Mutation p.L87P 0.09 tolerated(0.12) benign(0.019) TCGA-55-8089-01 10 18250781 18250781 C T SLC39A12 Missense_Mutation p.S178F 0.15 deleterious(0) benign(0.089) TCGA-55-8089-01 10 18276493 18276493 G A SLC39A12 Silent p.E394E 0.12 TCGA-55-8089-01 10 18276494 18276494 G A SLC39A12 Missense_Mutation p.E395K 0.12 deleterious(0) probably_damaging(0.997) TCGA-55-8089-01 10 20335827 20335827 T A PLXDC2 Silent p.S118S 0.16 TCGA-55-8089-01 10 24880167 24880168 - G ARHGAP21 Frame_Shift_Ins p.G1380Rfs*9 0.16 TCGA-55-8089-01 10 27702978 27702978 G C PTCHD3 Missense_Mutation p.L68V 0.17 tolerated_low_confidence(0.63) possibly_damaging(0.567) TCGA-55-8089-01 10 37488686 37488686 G C ANKRD30A Missense_Mutation p.K860N 0.28 tolerated(0.09) benign(0.094) TCGA-55-8089-01 10 37490186 37490186 G A ANKRD30A Silent p.Q878Q 0.11 TCGA-55-8089-01 10 38121459 38121460 - A ZNF248 Frame_Shift_Ins p.C275Lfs*24 0.14 TCGA-55-8089-01 10 44112231 44112231 G C ZNF485 Missense_Mutation p.C247S 0.20 deleterious(0) probably_damaging(0.994) TCGA-55-8089-01 10 46322075 46322075 T A AGAP4 Missense_Mutation p.E427V 0.20 tolerated(0.05) possibly_damaging(0.821) TCGA-55-8089-01 10 48428893 48428893 C T GDF10 Silent p.L331L 0.19 TCGA-55-8089-01 10 50121481 50121481 C G LRRC18 Silent p.L240L 0.16 TCGA-55-8089-01 10 50369534 50369534 C G C10orf128 Intron 0.40 TCGA-55-8089-01 10 50374961 50374961 A C C10orf128 Missense_Mutation p.F64C 0.18 tolerated(0.05) possibly_damaging(0.865) TCGA-55-8089-01 10 50668476 50668476 C A ERCC6 Missense_Mutation p.R1335S 0.12 deleterious(0.03) benign(0.219) TCGA-55-8089-01 10 50964909 50964909 C A OGDHL Missense_Mutation p.E96D 0.13 tolerated(0.59) benign(0.001) TCGA-55-8089-01 10 55582426 55582426 G T PCDH15 Missense_Mutation p.P1689H 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.614) TCGA-55-8089-01 10 55626402 55626402 G T PCDH15 Silent p.L1239L 0.16 TCGA-55-8089-01 10 55626423 55626423 C A PCDH15 Silent p.L1232L 0.21 TCGA-55-8089-01 10 5838739 5838739 G A GDI2 Silent p.F80F 0.12 TCGA-55-8089-01 10 60577398 60577398 T C BICC1 Silent p.N870N 0.11 TCGA-55-8089-01 10 61835250 61835250 C A ANK3 Missense_Mutation p.A1797S 0.15 benign(0.042) TCGA-55-8089-01 10 70048379 70048379 C A PBLD Silent p.L184L 0.07 TCGA-55-8089-01 10 70940037 70940037 C T SUPV3L1 5'UTR 0.11 TCGA-55-8089-01 10 71883211 71883211 C A AIFM2 Missense_Mutation p.V82L 0.15 deleterious(0.03) possibly_damaging(0.651) TCGA-55-8089-01 10 72181483 72181483 C G EIF4EBP2 Missense_Mutation p.Q115E 0.15 deleterious(0) benign(0.298) TCGA-55-8089-01 10 72289816 72289816 G A PALD1 Missense_Mutation p.G154R 0.09 deleterious(0.01) possibly_damaging(0.9) TCGA-55-8089-01 10 72293752 72293752 C T PALD1 Silent p.G315G 0.22 TCGA-55-8089-01 10 7318908 7318908 C A SFMBT2 Silent p.L272L 0.12 TCGA-55-8089-01 10 73511472 73511472 G C C10orf54 Missense_Mutation p.T284S 0.22 deleterious(0.05) probably_damaging(0.991) TCGA-55-8089-01 10 74692243 74692243 G C OIT3 Silent p.T533T 0.12 TCGA-55-8089-01 10 74923674 74923674 C A ECD Missense_Mutation p.A8S 0.09 tolerated(0.19) benign(0.002) TCGA-55-8089-01 10 84744961 84744961 T A NRG3 Missense_Mutation p.V564E 0.13 tolerated(0.12) possibly_damaging(0.675) TCGA-55-8089-01 10 93572948 93572948 G C TNKS2 Missense_Mutation p.K136N 0.15 deleterious(0.04) probably_damaging(0.96) TCGA-55-8089-01 11 102487733 102487733 C T MMP20 Missense_Mutation p.A62T 0.19 tolerated(0.22) benign(0.01) TCGA-55-8089-01 11 102666333 102666333 T A MMP1 Missense_Mutation p.N211Y 0.13 deleterious(0) probably_damaging(1) TCGA-55-8089-01 11 105929753 105929753 C A KBTBD3 Missense_Mutation p.K24N 0.15 tolerated_low_confidence(0.08) benign(0.005) TCGA-55-8089-01 11 113076242 113076242 C A NCAM1 Intron 0.13 TCGA-55-8089-01 11 113269874 113269874 G A ANKK1 Missense_Mutation p.G395R 0.21 deleterious(0) probably_damaging(0.986) TCGA-55-8089-01 11 113281409 113281409 G T DRD2 3'UTR 0.15 TCGA-55-8089-01 11 114310217 114310217 G T REXO2 5'UTR 0.26 TCGA-55-8089-01 11 116660902 116660902 C A APOA5 Missense_Mutation p.W348L 0.20 deleterious(0) probably_damaging(0.998) TCGA-55-8089-01 11 117308714 117308714 G C DSCAML1 Missense_Mutation p.D1503E 0.10 tolerated(1) benign(0.003) TCGA-55-8089-01 11 117376296 117376296 G A DSCAML1 Silent p.I705I 0.14 TCGA-55-8089-01 11 118886381 118886381 C G CCDC84 3'UTR 0.38 TCGA-55-8089-01 11 120008478 120008478 C G TRIM29 Missense_Mutation p.D88H 0.17 deleterious_low_confidence(0) possibly_damaging(0.881) TCGA-55-8089-01 11 122733122 122733122 G T CRTAM Intron 0.13 TCGA-55-8089-01 11 123509019 123509019 G A SCN3B Silent p.F153F 0.12 TCGA-55-8089-01 11 123600446 123600446 C G ZNF202 Missense_Mutation p.D164H 0.09 deleterious(0.03) possibly_damaging(0.659) TCGA-55-8089-01 11 123601503 123601503 C G ZNF202 Missense_Mutation p.E32Q 0.19 deleterious(0.01) possibly_damaging(0.848) TCGA-55-8089-01 11 123811220 123811220 G A OR4D5 Silent p.K299K 0.16 TCGA-55-8089-01 11 123900991 123900991 T C OR10G8 Missense_Mutation p.V221A 0.19 tolerated(0.09) benign(0.077) TCGA-55-8089-01 11 124007760 124007760 A C VWA5A Missense_Mutation p.Q555P 0.19 deleterious(0.02) possibly_damaging(0.781) TCGA-55-8089-01 11 124135333 124135333 G T OR8G5 Missense_Mutation p.C204F 0.09 deleterious(0) probably_damaging(1) TCGA-55-8089-01 11 124189534 124189534 A C OR8D2 Missense_Mutation p.L187R 0.21 deleterious(0.01) probably_damaging(1) TCGA-55-8089-01 11 124735486 124735486 C T ROBO3 Silent p.L5L 0.24 TCGA-55-8089-01 11 124793653 124793653 G T HEPACAM Silent p.R227R 0.12 TCGA-55-8089-01 11 124946728 124946728 C A SLC37A2 Silent p.I45I 0.11 TCGA-55-8089-01 11 126081579 126081579 G T FAM118B 5'UTR 0.16 TCGA-55-8089-01 11 126279243 126279243 C T ST3GAL4 Silent p.F236F 0.16 TCGA-55-8089-01 11 1268972 1268972 C T MUC5B Missense_Mutation p.A3621V 0.17 probably_damaging(0.946) TCGA-55-8089-01 11 130275360 130275360 T C ADAMTS8 3'UTR 0.21 TCGA-55-8089-01 11 130288957 130288957 G T ADAMTS8 Silent p.L317L 0.12 TCGA-55-8089-01 11 130785474 130785474 C A SNX19 Missense_Mutation p.V121L 0.18 tolerated(0.1) possibly_damaging(0.556) TCGA-55-8089-01 11 132177639 132177639 C A NTM Missense_Mutation p.Q195K 0.10 tolerated(0.07) benign(0.219) TCGA-55-8089-01 11 133790196 133790196 T C IGSF9B Missense_Mutation p.M1142V 0.09 tolerated_low_confidence(0.25) benign(0.012) TCGA-55-8089-01 11 134253950 134253950 G A B3GAT1 Missense_Mutation p.T82M 0.12 deleterious(0.02) benign(0.277) TCGA-55-8089-01 11 1651409 1651409 G T KRTAP5-5 Silent p.G113G 0.17 TCGA-55-8089-01 11 17434943 17434943 G T ABCC8 Silent p.R825R 0.15 TCGA-55-8089-01 11 17793475 17793475 C A KCNC1 Silent p.L278L 0.18 TCGA-55-8089-01 11 18269490 18269490 C A SAA2 Silent p.S23S 0.20 TCGA-55-8089-01 11 18460162 18460162 G T LDHC Missense_Mutation p.W227L 0.16 tolerated(0.11) probably_damaging(0.976) TCGA-55-8089-01 11 20066981 20066981 G T NAV2 Missense_Mutation p.A1246S 0.07 tolerated(0.16) probably_damaging(0.997) TCGA-55-8089-01 11 27016120 27016120 G T FIBIN Missense_Mutation p.C16F 0.14 deleterious_low_confidence(0.05) possibly_damaging(0.777) TCGA-55-8089-01 11 33374746 33374746 C G HIPK3 Missense_Mutation p.H1094D 0.25 deleterious(0) benign(0.046) TCGA-55-8089-01 11 36615309 36615309 C A RAG2 Missense_Mutation p.R137I 0.24 deleterious(0) probably_damaging(0.99) TCGA-55-8089-01 11 40136444 40136444 C A LRRC4C Missense_Mutation p.D467Y 0.19 deleterious(0.01) possibly_damaging(0.615) TCGA-55-8089-01 11 40136445 40136445 C A LRRC4C Missense_Mutation p.Q466H 0.18 tolerated_low_confidence(0.13) benign(0.001) TCGA-55-8089-01 11 40136491 40136491 A - LRRC4C Frame_Shift_Del p.F451Sfs*9 0.19 TCGA-55-8089-01 11 43471696 43471696 G A TTC17 Missense_Mutation p.G951S 0.16 tolerated(0.67) benign(0.01) TCGA-55-8089-01 11 4608625 4608625 C A OR52I2 Missense_Mutation p.H195N 0.19 tolerated(0.12) benign(0.012) TCGA-55-8089-01 11 4615437 4615437 T A OR52I1 Missense_Mutation p.S57T 0.15 tolerated(0.29) possibly_damaging(0.45) TCGA-55-8089-01 11 4674737 4674737 C G OR51E1 3'UTR 0.36 TCGA-55-8089-01 11 47599071 47599071 C G KBTBD4 Missense_Mutation p.E177Q 0.18 tolerated(0.57) benign(0.095) TCGA-55-8089-01 11 49207394 49207394 T A FOLH1 Missense_Mutation p.Q218L 0.12 tolerated(0.55) benign(0.005) TCGA-55-8089-01 11 5410710 5410710 A G OR51M1 Missense_Mutation p.S28G 0.18 tolerated(1) benign(0.001) TCGA-55-8089-01 11 549960 549960 G T LRRC56 Missense_Mutation p.A129S 0.21 tolerated(0.53) benign(0.135) TCGA-55-8089-01 11 55032474 55032474 A T TRIM48 Missense_Mutation p.H48L 0.16 deleterious(0) probably_damaging(0.998) TCGA-55-8089-01 11 55432896 55432896 C A OR4C6 Missense_Mutation p.S85Y 0.11 tolerated_low_confidence(1) benign(0.06) TCGA-55-8089-01 11 55579207 55579207 G A OR5L1 Missense_Mutation p.D89N 0.14 tolerated(0.17) benign(0.049) TCGA-55-8089-01 11 55594981 55594981 G T OR5L2 Missense_Mutation p.G96V 0.11 deleterious(0.01) possibly_damaging(0.448) TCGA-55-8089-01 11 55653532 55653532 C G TRIM51 Intron 0.25 TCGA-55-8089-01 11 55905006 55905006 C T OR8J3 Silent p.L63L 0.14 TCGA-55-8089-01 11 55927648 55927648 G T OR8K5 Missense_Mutation p.T49N 0.11 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-55-8089-01 11 56000039 56000039 C A OR5T2 Missense_Mutation p.C208F 0.14 deleterious(0) probably_damaging(0.958) TCGA-55-8089-01 11 56114407 56114407 T A OR8K1 Missense_Mutation p.L298Q 0.15 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-55-8089-01 11 57427275 57427275 G T CLP1 Missense_Mutation p.K109N 0.20 tolerated(0.32) benign(0.001) TCGA-55-8089-01 11 5776243 5776243 C G OR52N4 Silent p.L91L 0.21 TCGA-55-8089-01 11 57799136 57799136 C A OR6Q1 Missense_Mutation p.R238S 0.20 deleterious(0.03) benign(0.374) TCGA-55-8089-01 11 58189950 58189950 G T OR5B2 Missense_Mutation p.S262Y 0.15 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-55-8089-01 11 58480244 58480244 A T GLYAT Nonsense_Mutation p.L102* 0.15 TCGA-55-8089-01 11 58892225 58892225 G A FAM111B Missense_Mutation p.E219K 0.09 deleterious(0.01) probably_damaging(0.941) TCGA-55-8089-01 11 58920200 58920200 C T FAM111A Silent p.L353L 0.11 TCGA-55-8089-01 11 59211002 59211002 A G OR5A1 Missense_Mutation p.M121V 0.15 deleterious(0) probably_damaging(0.995) TCGA-55-8089-01 11 59481056 59481056 A T OR10V1 Missense_Mutation p.M88K 0.08 tolerated(0.91) benign(0.269) TCGA-55-8089-01 11 59626714 59626714 G T TCN1 Missense_Mutation p.L195M 0.15 deleterious(0.03) probably_damaging(1) TCGA-55-8089-01 11 60184278 60184278 G A MS4A14 Missense_Mutation p.E646K 0.11 tolerated(0.21) benign(0.036) TCGA-55-8089-01 11 60780966 60780966 C A CD6 Missense_Mutation p.L408M 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 11 61081950 61081950 T C DDB1 Silent p.S473S 0.17 TCGA-55-8089-01 11 61557370 61557370 T C TMEM258 Missense_Mutation p.Y46C 0.25 tolerated(0.1) benign(0.085) TCGA-55-8089-01 11 61732337 61732337 G T FTH1 Nonsense_Mutation p.Y138* 0.15 TCGA-55-8089-01 11 62293132 62293132 G - AHNAK Frame_Shift_Del p.K2920Rfs*27 0.08 TCGA-55-8089-01 11 62415212 62415212 G T INTS5 Silent p.L780L 0.14 TCGA-55-8089-01 11 64323456 64323456 C A SLC22A11 5'UTR 0.15 TCGA-55-8089-01 11 64359271 64359271 C A SLC22A12 Silent p.P81P 0.19 TCGA-55-8089-01 11 64508454 64508454 G A RASGRP2 Nonsense_Mutation p.R113* 0.05 TCGA-55-8089-01 11 6453004 6453004 C A HPX Missense_Mutation p.K332N 0.22 tolerated(0.22) benign(0.28) TCGA-55-8089-01 11 64575464 64575464 C A MEN1 Missense_Mutation p.V190L 0.13 deleterious(0.01) possibly_damaging(0.779) TCGA-55-8089-01 11 65088676 65088676 C G CDC42EP2 Missense_Mutation p.L103V 0.06 tolerated(0.49) probably_damaging(0.997) TCGA-55-8089-01 11 66083467 66083467 C A CD248 Missense_Mutation p.E344D 0.10 tolerated(0.38) possibly_damaging(0.738) TCGA-55-8089-01 11 67077583 67077583 G C SSH3 Missense_Mutation p.E486Q 0.14 tolerated(0.11) probably_damaging(0.997) TCGA-55-8089-01 11 68747504 68747504 C G MRGPRD Missense_Mutation p.E318Q 0.15 tolerated(0.21) benign(0.017) TCGA-55-8089-01 11 69458749 69458749 C T CCND1 Silent p.L188L 0.20 TCGA-55-8089-01 11 70202354 70202354 A T PPFIA1 Missense_Mutation p.Q859L 0.14 deleterious(0) benign(0.002) TCGA-55-8089-01 11 71728691 71728691 C A NUMA1 Intron 0.15 TCGA-55-8089-01 11 75298044 75298044 C A MAP6 3'UTR 0.07 TCGA-55-8089-01 11 75431139 75431139 G T MOGAT2 Missense_Mutation p.R65L 0.15 tolerated(0.19) benign(0.015) TCGA-55-8089-01 11 77781037 77781037 C A NDUFC2 Missense_Mutation p.R119L 0.18 deleterious(0) probably_damaging(1) TCGA-55-8089-01 11 77907295 77907295 G T USP35 Missense_Mutation p.D2Y 0.17 deleterious(0) unknown(0) TCGA-55-8089-01 11 78369691 78369691 C T TENM4 Silent p.L2574L 0.20 TCGA-55-8089-01 11 8060569 8060569 G A TUB Missense_Mutation p.R50K 0.21 deleterious_low_confidence(0.04) benign(0.01) TCGA-55-8089-01 11 86666065 86666065 C A FZD4 Silent p.L21L 0.28 TCGA-55-8089-01 11 92600170 92600170 G T FAT3 Silent p.R3974R 0.27 TCGA-55-8089-01 11 92616494 92616494 C T FAT3 Missense_Mutation p.A4291V 0.28 benign(0.097) TCGA-55-8089-01 11 92624032 92624032 C G FAT3 Missense_Mutation p.P4508R 0.20 benign(0.058) TCGA-55-8089-01 11 94113618 94113618 G A GPR83 Silent p.N323N 0.16 TCGA-55-8089-01 11 94134353 94134353 C T GPR83 Missense_Mutation p.E21K 0.10 tolerated_low_confidence(0.85) benign(0.001) TCGA-55-8089-01 11 94341824 94341824 G T PIWIL4 Missense_Mutation p.V639L 0.15 deleterious(0) probably_damaging(0.995) TCGA-55-8089-01 12 10313441 10313441 C A OLR1 Nonsense_Mutation p.E170* 0.12 TCGA-55-8089-01 12 107371932 107371932 C T MTERFD3 Missense_Mutation p.M187I 0.20 tolerated(0.21) benign(0.002) TCGA-55-8089-01 12 10763279 10763279 C A MAGOHB Missense_Mutation p.G32V 0.11 deleterious(0) probably_damaging(1) TCGA-55-8089-01 12 10954722 10954722 C G TAS2R7 Missense_Mutation p.E150Q 0.17 tolerated(0.48) possibly_damaging(0.638) TCGA-55-8089-01 12 109844646 109844646 T C MYO1H Missense_Mutation p.I323T 0.19 deleterious(0) probably_damaging(0.998) TCGA-55-8089-01 12 110206269 110206269 G A FAM222A Missense_Mutation p.A179T 0.12 tolerated(0.39) benign(0.002) TCGA-55-8089-01 12 110246263 110246263 G A TRPV4 Nonsense_Mutation p.Q133* 0.12 TCGA-55-8089-01 12 113830952 113830952 C T SDS Missense_Mutation p.D261N 0.23 deleterious(0) possibly_damaging(0.71) TCGA-55-8089-01 12 11506916 11506916 G T PRB1 Missense_Mutation p.P41T 0.12 deleterious_low_confidence(0) unknown(0) TCGA-55-8089-01 12 116420968 116420968 C A MED13L Missense_Mutation p.D1637Y 0.28 deleterious(0.01) possibly_damaging(0.857) TCGA-55-8089-01 12 117768905 117768905 A T NOS1 5'Flank 0.25 TCGA-55-8089-01 12 117922265 117922265 C G KSR2 Silent p.T802T 0.24 TCGA-55-8089-01 12 118673477 118673477 C A TAOK3 Splice_Site p.X146_splice 0.40 TCGA-55-8089-01 12 1192349 1192349 A G ERC1 Missense_Mutation p.Q230R 0.11 tolerated(0.09) benign(0.401) TCGA-55-8089-01 12 125432621 125432621 C G DHX37 Intron 0.13 TCGA-55-8089-01 12 125619373 125619373 C T AACS Silent p.F551F 0.24 TCGA-55-8089-01 12 12673889 12673889 G A DUSP16 Silent p.I48I 0.10 TCGA-55-8089-01 12 132284087 132284087 C G SFSWAP 3'UTR 0.50 TCGA-55-8089-01 12 132380370 132380370 G A ULK1 Splice_Site p.X82_splice 0.07 TCGA-55-8089-01 12 132445563 132445563 C T EP400 Silent p.T133T 0.25 TCGA-55-8089-01 12 133384799 133384799 C G GOLGA3 Missense_Mutation p.E286Q 0.14 tolerated_low_confidence(0.06) possibly_damaging(0.882) TCGA-55-8089-01 12 14946755 14946755 C T WBP11 Missense_Mutation p.D275N 0.15 deleterious_low_confidence(0.01) unknown(0) TCGA-55-8089-01 12 1940449 1940449 C T LRTM2 Missense_Mutation p.S139L 0.18 tolerated(0.98) benign(0.001) TCGA-55-8089-01 12 2024044 2024044 G T CACNA2D4 Nonsense_Mutation p.Y95* 0.15 TCGA-55-8089-01 12 20803377 20803377 A T PDE3A Splice_Site p.X924_splice 0.14 TCGA-55-8089-01 12 20803378 20803378 G T PDE3A Splice_Site p.X924_splice 0.14 TCGA-55-8089-01 12 21331587 21331587 C A SLCO1B1 Missense_Mutation p.P187T 0.17 deleterious(0) probably_damaging(1) TCGA-55-8089-01 12 21349937 21349937 T G SLCO1B1 Missense_Mutation p.F262C 0.05 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 12 21375245 21375245 C A SLCO1B1 Missense_Mutation p.P565H 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 12 21526336 21526336 G A IAPP Silent p.L17L 0.19 TCGA-55-8089-01 12 21970224 21970224 A T ABCC9 Missense_Mutation p.N1263K 0.15 deleterious(0) possibly_damaging(0.702) TCGA-55-8089-01 12 23699306 23699306 T A SOX5 Missense_Mutation p.E514V 0.19 tolerated(0.18) benign(0.114) TCGA-55-8089-01 12 31135492 31135492 C A TSPAN11 Nonsense_Mutation p.S161* 0.20 TCGA-55-8089-01 12 4614499 4614499 C A C12orf4 Nonsense_Mutation p.E404* 0.11 TCGA-55-8089-01 12 46243558 46243558 A T ARID2 Silent p.A637A 0.22 TCGA-55-8089-01 12 48258951 48258951 C T VDR Missense_Mutation p.M102I 0.16 tolerated(0.24) benign(0.09) TCGA-55-8089-01 12 5154245 5154245 C A KCNA5 Missense_Mutation p.T311K 0.15 tolerated(0.09) probably_damaging(0.932) TCGA-55-8089-01 12 52467483 52467483 G T C12orf44 Missense_Mutation p.V17L 0.24 tolerated(0.08) benign(0.172) TCGA-55-8089-01 12 52979710 52979710 G T KRT72 3'UTR 0.14 TCGA-55-8089-01 12 52980764 52980764 C T KRT72 Silent p.R437R 0.36 TCGA-55-8089-01 12 53207580 53207580 C A KRT4 Missense_Mutation p.G88V 0.38 tolerated(0.07) possibly_damaging(0.854) TCGA-55-8089-01 12 53241721 53241721 C A KRT78 Missense_Mutation p.C190F 0.21 tolerated(0.17) benign(0.022) TCGA-55-8089-01 12 53454531 53454531 C T TENC1 Silent p.P957P 0.07 TCGA-55-8089-01 12 55615501 55615501 C A OR10A7 Silent p.A231A 0.13 TCGA-55-8089-01 12 56749993 56749993 C T STAT2 Missense_Mutation p.E70K 0.14 deleterious(0.03) benign(0.033) TCGA-55-8089-01 12 57181056 57181056 C G HSD17B6 Missense_Mutation p.S295C 0.33 deleterious(0) possibly_damaging(0.846) TCGA-55-8089-01 12 58128130 58128130 C T AGAP2 Missense_Mutation p.R458Q 0.21 deleterious(0) probably_damaging(0.984) TCGA-55-8089-01 12 58217754 58217754 C A CTDSP2 Missense_Mutation p.R208M 0.28 deleterious(0) probably_damaging(1) TCGA-55-8089-01 12 6127870 6127870 C A VWF Missense_Mutation p.G1572C 0.15 deleterious(0) benign(0.352) TCGA-55-8089-01 12 6128036 6128036 C A VWF Missense_Mutation p.R1516S 0.18 tolerated(0.06) benign(0.008) TCGA-55-8089-01 12 62783587 62783587 A G USP15 Missense_Mutation p.N555D 0.23 tolerated(0.45) benign(0.04) TCGA-55-8089-01 12 6457408 6457408 G C SCNN1A Silent p.L606L 0.10 TCGA-55-8089-01 12 66724980 66724980 G T HELB Missense_Mutation p.R906L 0.29 deleterious(0) probably_damaging(0.983) TCGA-55-8089-01 12 6952582 6952582 C T GNB3 Missense_Mutation p.S108L 0.16 deleterious(0.01) possibly_damaging(0.498) TCGA-55-8089-01 12 69666854 69666854 G C CPSF6 3'UTR 0.27 TCGA-55-8089-01 12 6976726 6976726 G C TPI1 Missense_Mutation p.S36T 0.16 tolerated_low_confidence(0.54) benign(0.001) TCGA-55-8089-01 12 70065277 70065277 C A BEST3 Missense_Mutation p.R344L 0.14 deleterious(0.01) benign(0.013) TCGA-55-8089-01 12 7016570 7016570 C G LRRC23 Silent p.T194T 0.09 TCGA-55-8089-01 12 7066841 7066841 G A PTPN6 Missense_Mutation p.E367K 0.15 deleterious(0.04) possibly_damaging(0.695) TCGA-55-8089-01 12 7362389 7362389 G T PEX5 Silent p.R572R 0.07 TCGA-55-8089-01 12 7531738 7531738 G T CD163L1 Missense_Mutation p.A736E 0.16 deleterious(0) possibly_damaging(0.888) TCGA-55-8089-01 12 75900277 75900277 C A KRR1 Missense_Mutation p.G169V 0.36 deleterious(0) probably_damaging(0.967) TCGA-55-8089-01 12 78362433 78362433 C A NAV3 Missense_Mutation p.P208T 0.32 tolerated_low_confidence(0.23) benign(0.004) TCGA-55-8089-01 12 78400485 78400485 G A NAV3 Silent p.K389K 0.33 TCGA-55-8089-01 12 80650120 80650121 - T OTOGL Frame_Shift_Ins p.G523Wfs*15 0.15 TCGA-55-8089-01 12 8085688 8085688 G A SLC2A3 Missense_Mutation p.S55F 0.12 deleterious(0) possibly_damaging(0.89) TCGA-55-8089-01 12 81329513 81329513 T G LIN7A Intron 0.28 TCGA-55-8089-01 12 8374976 8374976 G T FAM90A1 Silent p.G279G 0.09 TCGA-55-8089-01 12 85257273 85257273 C G SLC6A15 Missense_Mutation p.S588T 0.30 tolerated(0.17) probably_damaging(0.998) TCGA-55-8089-01 12 85450241 85450241 T C LRRIQ1 Missense_Mutation p.L557S 0.22 tolerated(0.09) benign(0.045) TCGA-55-8089-01 12 85531691 85531691 G A LRRIQ1 Missense_Mutation p.E1425K 0.09 deleterious(0.01) possibly_damaging(0.736) TCGA-55-8089-01 12 88505082 88505082 C G CEP290 Missense_Mutation p.G755A 0.18 benign(0.014) TCGA-55-8089-01 12 9010663 9010663 G T A2ML1 Missense_Mutation p.A1077S 0.19 tolerated(0.44) benign(0.232) TCGA-55-8089-01 12 9020498 9020498 G C A2ML1 Missense_Mutation p.E1260Q 0.21 tolerated(0.13) benign(0.288) TCGA-55-8089-01 12 9242560 9242560 C T A2M Missense_Mutation p.E886K 0.14 tolerated(0.21) benign(0.046) TCGA-55-8089-01 13 103703661 103703661 G T SLC10A2 Missense_Mutation p.A236E 0.23 deleterious(0.01) possibly_damaging(0.663) TCGA-55-8089-01 13 111114631 111114631 G T COL4A2 Missense_Mutation p.R559L 0.23 possibly_damaging(0.549) TCGA-55-8089-01 13 114309244 114309244 C T ATP4B Silent p.L42L 0.10 TCGA-55-8089-01 13 28498512 28498512 C A PDX1 Silent p.R176R 0.18 TCGA-55-8089-01 13 31735714 31735714 C T HSPH1 Silent p.S2S 0.12 TCGA-55-8089-01 13 33110237 33110237 C A N4BP2L2 Intron 0.22 TCGA-55-8089-01 13 33634819 33634819 G C KL Missense_Mutation p.D535H 0.25 tolerated(0.17) benign(0.411) TCGA-55-8089-01 13 39587389 39587389 C T PROSER1 Missense_Mutation p.S667N 0.27 tolerated(0.12) benign(0.202) TCGA-55-8089-01 13 41507961 41507961 T A ELF1 Missense_Mutation p.Q487L 0.11 tolerated(0.05) benign(0.21) TCGA-55-8089-01 13 46708386 46708386 C A LCP1 Splice_Site p.X501_splice 0.22 TCGA-55-8089-01 13 52439679 52439679 G A CCDC70 Missense_Mutation p.M55I 0.21 tolerated(1) benign(0.009) TCGA-55-8089-01 13 73320851 73320851 G T BORA Nonsense_Mutation p.E362* 0.25 TCGA-55-8089-01 13 73320852 73320852 A T BORA Missense_Mutation p.E362V 0.25 deleterious(0.03) possibly_damaging(0.736) TCGA-55-8089-01 13 88328751 88328751 G T SLITRK5 Missense_Mutation p.V370L 0.09 deleterious(0.01) benign(0.119) TCGA-55-8089-01 13 96205224 96205224 G T CLDN10 Missense_Mutation p.D73Y 0.27 deleterious(0.01) possibly_damaging(0.863) TCGA-55-8089-01 13 96651530 96651530 C A UGGT2 Missense_Mutation p.G231V 0.28 deleterious(0) probably_damaging(1) TCGA-55-8089-01 13 98865613 98865613 C G FARP1 Silent p.L39L 0.15 TCGA-55-8089-01 13 99368131 99368131 C A SLC15A1 Splice_Site p.X241_splice 0.26 TCGA-55-8089-01 14 100182221 100182221 C T CYP46A1 Silent p.D256D 0.22 TCGA-55-8089-01 14 100363537 100363537 G A EML1 Missense_Mutation p.E264K 0.20 deleterious(0) probably_damaging(0.929) TCGA-55-8089-01 14 101531709 101531709 G T MIR409 RNA 0.23 TCGA-55-8089-01 14 102548086 102548086 C A HSP90AA1 Missense_Mutation p.G843V 0.09 deleterious_low_confidence(0.03) unknown(0) TCGA-55-8089-01 14 103180943 103180943 G T RCOR1 Missense_Mutation p.V348F 0.47 tolerated(0.05) benign(0.387) TCGA-55-8089-01 14 104643064 104643064 G T KIF26A Silent p.L1313L 0.25 TCGA-55-8089-01 14 105414869 105414869 C T AHNAK2 Missense_Mutation p.A2307T 0.23 possibly_damaging(0.908) TCGA-55-8089-01 14 105419746 105419746 T A AHNAK2 Missense_Mutation p.K681M 0.08 probably_damaging(0.999) TCGA-55-8089-01 14 106641586 106641586 T C IGHV1-18 Missense_Mutation p.T110A 0.07 deleterious(0.01) possibly_damaging(0.837) TCGA-55-8089-01 14 106691769 106691769 G T IGHV3-21 Silent p.G85G 0.21 TCGA-55-8089-01 14 106967186 106967186 G T IGHV1-46 Missense_Mutation p.P72T 0.20 tolerated(0.17) benign(0.11) TCGA-55-8089-01 14 106994037 106994037 G T IGHV3-48 Missense_Mutation p.A43D 0.13 deleterious_low_confidence(0) possibly_damaging(0.619) TCGA-55-8089-01 14 20779813 20779813 T A CCNB1IP1 Missense_Mutation p.T244S 0.15 tolerated_low_confidence(0.79) benign(0) TCGA-55-8089-01 14 20915322 20915322 C A OSGEP 3'UTR 0.21 TCGA-55-8089-01 14 21501940 21501940 G A RP11-998D10.1 Silent p.L92L 0.24 TCGA-55-8089-01 14 22466179 22466179 G A TRAV17 Missense_Mutation p.E37K 0.09 tolerated(0.08) benign(0.403) TCGA-55-8089-01 14 23586830 23586830 C T CEBPE Missense_Mutation p.E238K 0.11 deleterious(0) probably_damaging(0.989) TCGA-55-8089-01 14 23866390 23866390 C G MYH6 Missense_Mutation p.R680P 0.16 deleterious(0.02) benign(0.271) TCGA-55-8089-01 14 23893131 23893131 G T MYH7 Missense_Mutation p.H969Q 0.18 tolerated(0.12) probably_damaging(0.985) TCGA-55-8089-01 14 24031721 24031721 G C AP1G2 Missense_Mutation p.P498A 0.23 tolerated(0.09) benign(0.016) TCGA-55-8089-01 14 51378580 51378580 C G PYGL Missense_Mutation p.G613R 0.29 deleterious(0) probably_damaging(1) TCGA-55-8089-01 14 54976677 54976677 G A CGRRF1 5'UTR 0.13 TCGA-55-8089-01 14 60928088 60928088 C A C14orf39 Silent p.S367S 0.16 TCGA-55-8089-01 14 63316568 63316568 G A KCNH5 Missense_Mutation p.L458F 0.23 deleterious(0.03) probably_damaging(0.943) TCGA-55-8089-01 14 64518345 64518345 G T SYNE2 Missense_Mutation p.D2572Y 0.09 possibly_damaging(0.652) TCGA-55-8089-01 14 66188641 66188641 G T FUT8 Silent p.V328V 0.12 TCGA-55-8089-01 14 68191904 68191904 G T RDH12 Silent p.V92V 0.22 TCGA-55-8089-01 14 69256498 69256498 C T ZFP36L1 Missense_Mutation p.E257K 0.28 deleterious(0.04) possibly_damaging(0.463) TCGA-55-8089-01 14 70175421 70175421 G T KIAA0247 Missense_Mutation p.Q162H 0.25 deleterious(0.03) probably_damaging(0.971) TCGA-55-8089-01 14 71428954 71428954 G A PCNX Missense_Mutation p.G125E 0.15 tolerated(0.18) probably_damaging(1) TCGA-55-8089-01 14 74711991 74711991 G C VSX2 Missense_Mutation p.Q193H 0.13 deleterious(0) probably_damaging(1) TCGA-55-8089-01 14 76643021 76643021 C T GPATCH2L Missense_Mutation p.P347L 0.16 deleterious(0) possibly_damaging(0.471) TCGA-55-8089-01 14 77889077 77889077 C A NOXRED1 Splice_Site p.X52_splice 0.28 TCGA-55-8089-01 14 77910608 77910608 C T VIPAS39 Missense_Mutation p.G194E 0.17 deleterious(0) probably_damaging(1) TCGA-55-8089-01 14 79270046 79270046 T A NRXN3 Missense_Mutation p.S337T 0.09 tolerated(0.06) possibly_damaging(0.902) TCGA-55-8089-01 14 89647108 89647108 C T FOXN3 Missense_Mutation p.R285Q 0.17 tolerated(0.96) benign(0.052) TCGA-55-8089-01 14 90651221 90651221 G C KCNK13 Silent p.L367L 0.29 TCGA-55-8089-01 14 93813657 93813657 C T COX8C Missense_Mutation p.R15C 0.29 deleterious(0) possibly_damaging(0.876) TCGA-55-8089-01 14 95090026 95090026 C A SERPINA3 Missense_Mutation p.L383I 0.12 tolerated(0.39) benign(0.009) TCGA-55-8089-01 15 100341268 100341268 G T DNM1P46 RNA 0.06 TCGA-55-8089-01 15 101109667 101109667 G A LINS Silent p.L684L 0.14 TCGA-55-8089-01 15 23812100 23812100 T C MKRN3 Missense_Mutation p.Y391H 0.16 deleterious(0) probably_damaging(0.998) TCGA-55-8089-01 15 23890686 23890686 C A MAGEL2 Missense_Mutation p.R132L 0.23 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-55-8089-01 15 25219589 25219589 G A SNRPN 5'UTR 0.21 TCGA-55-8089-01 15 25494378 25494378 G A SNORD115-43 RNA 0.14 TCGA-55-8089-01 15 26825586 26825586 C T GABRB3 Missense_Mutation p.D188N 0.18 deleterious(0) probably_damaging(0.991) TCGA-55-8089-01 15 27128603 27128603 C A GABRA5 Missense_Mutation p.D132E 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 15 28096607 28096607 C A OCA2 Silent p.L753L 0.18 TCGA-55-8089-01 15 28458980 28458980 T C HERC2 Missense_Mutation p.T2232A 0.18 probably_damaging(0.918) TCGA-55-8089-01 15 29560956 29560956 C T NDNL2 3'UTR 0.21 TCGA-55-8089-01 15 41342253 41342253 T C INO80 Silent p.L774L 0.16 TCGA-55-8089-01 15 41657673 41657673 C T NUSAP1 Missense_Mutation p.P245L 0.18 deleterious(0) probably_damaging(1) TCGA-55-8089-01 15 42483359 42483359 C A VPS39 Missense_Mutation p.V71L 0.07 deleterious(0.05) probably_damaging(0.927) TCGA-55-8089-01 15 43724717 43724717 G A TP53BP1 Missense_Mutation p.P1117L 0.23 tolerated(0.11) benign(0.005) TCGA-55-8089-01 15 43924541 43924541 G C CATSPER2 Missense_Mutation p.L473V 0.10 tolerated(0.44) benign(0.08) TCGA-55-8089-01 15 45003799 45003799 G T B2M Nonsense_Mutation p.E19* 0.10 TCGA-55-8089-01 15 45409346 45409346 C T DUOXA2 Silent p.L204L 0.16 TCGA-55-8089-01 15 45490969 45490969 C G SHF Splice_Site p.X101_splice 0.15 TCGA-55-8089-01 15 45567802 45567802 C T SLC28A2 3'UTR 0.22 TCGA-55-8089-01 15 48055266 48055266 C A SEMA6D Silent p.R238R 0.19 TCGA-55-8089-01 15 48780337 48780337 C T FBN1 Missense_Mutation p.G1104R 0.16 probably_damaging(0.998) TCGA-55-8089-01 15 49447807 49447807 C G COPS2 5'UTR 0.26 TCGA-55-8089-01 15 50782575 50782575 A C USP8 Missense_Mutation p.H696P 0.15 tolerated(0.33) benign(0.003) TCGA-55-8089-01 15 59799490 59799490 G T FAM81A Missense_Mutation p.Q164H 0.14 tolerated(0.15) benign(0.121) TCGA-55-8089-01 15 65622132 65622132 G T IGDCC3 Silent p.I643I 0.19 TCGA-55-8089-01 15 67073643 67073643 G T SMAD6 Missense_Mutation p.G421C 0.24 tolerated(0.06) benign(0.214) TCGA-55-8089-01 15 72192107 72192107 C - MYO9A Frame_Shift_Del p.E1131Kfs*31 0.20 TCGA-55-8089-01 15 72582475 72582475 G A CELF6 Silent p.T172T 0.22 TCGA-55-8089-01 15 74173788 74173788 G T TBC1D21 Missense_Mutation p.D37Y 0.13 deleterious(0) probably_damaging(0.994) TCGA-55-8089-01 15 74284596 74284596 C T STOML1 5'UTR 0.12 TCGA-55-8089-01 15 74467872 74467872 C A ISLR Missense_Mutation p.P225T 0.15 deleterious(0) benign(0.212) TCGA-55-8089-01 15 75185534 75185534 G A MPI Silent p.Q181Q 0.07 TCGA-55-8089-01 15 75185540 75185540 G A MPI Missense_Mutation p.M183I 0.08 tolerated(0.51) benign(0) TCGA-55-8089-01 15 75967794 75967794 G C CSPG4 3'UTR 0.12 TCGA-55-8089-01 15 76248310 76248310 G A NRG4 Silent p.I98I 0.10 TCGA-55-8089-01 15 78211365 78211365 C A RP11-114H24.7 Intron 0.16 TCGA-55-8089-01 15 81440836 81440836 C A C15orf26 Silent p.R290R 0.09 TCGA-55-8089-01 15 81575070 81575070 C T IL16 Missense_Mutation p.S391F 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 15 83328728 83328728 C T AP3B2 Silent p.L989L 0.18 TCGA-55-8089-01 15 84506903 84506903 C T ADAMTSL3 Silent p.A221A 0.16 TCGA-55-8089-01 15 87099504 87099504 G T AGBL1 Silent p.V969V 0.11 TCGA-55-8089-01 15 90015939 90015939 C T RHCG Intron 0.11 TCGA-55-8089-01 15 97326891 97326891 C A SPATA8 Silent p.A2A 0.14 TCGA-55-8089-01 15 99758904 99758904 G A TTC23 Missense_Mutation p.A157V 0.15 tolerated(0.12) benign(0.122) TCGA-55-8089-01 16 139752 139752 C A NPRL3 Missense_Mutation p.R437L 0.23 tolerated(0.22) benign(0.095) TCGA-55-8089-01 16 18846284 18846284 G A SMG1 Missense_Mutation p.H2754Y 0.25 tolerated(0.67) benign(0.139) TCGA-55-8089-01 16 20084831 20084831 C A GPR139 Missense_Mutation p.L36F 0.19 deleterious(0) benign(0.347) TCGA-55-8089-01 16 2142138 2142138 C A PKD1 Missense_Mutation p.G3774V 0.28 benign(0.068) TCGA-55-8089-01 16 21702953 21702953 G C OTOA Missense_Mutation p.Q228H 0.16 deleterious(0) probably_damaging(0.967) TCGA-55-8089-01 16 22325045 22325045 G T POLR3E Nonsense_Mutation p.E157* 0.21 TCGA-55-8089-01 16 22325442 22325442 A C POLR3E Missense_Mutation p.Q172P 0.18 tolerated(0.39) benign(0.017) TCGA-55-8089-01 16 22326467 22326467 G T POLR3E Nonsense_Mutation p.E194* 0.23 TCGA-55-8089-01 16 22328517 22328517 G A POLR3E Silent p.L285L 0.20 TCGA-55-8089-01 16 22330144 22330144 C T POLR3E Intron 0.20 TCGA-55-8089-01 16 22358583 22358583 C T CDR2 Silent p.L356L 0.21 TCGA-55-8089-01 16 23428349 23428349 T A COG7 Nonsense_Mutation p.R411* 0.13 TCGA-55-8089-01 16 23555867 23555867 C T EARS2 Silent p.K151K 0.20 TCGA-55-8089-01 16 23713778 23713778 G C ERN2 Silent p.G386G 0.15 TCGA-55-8089-01 16 23713796 23713796 G A ERN2 Silent p.V380V 0.14 TCGA-55-8089-01 16 24183644 24183644 C A PRKCB Missense_Mutation p.H431Q 0.12 tolerated(0.93) benign(0.284) TCGA-55-8089-01 16 26147230 26147230 C A HS3ST4 Silent p.L344L 0.11 TCGA-55-8089-01 16 27481547 27481547 C A GTF3C1 Nonsense_Mutation p.G1566* 0.12 TCGA-55-8089-01 16 2881899 2881899 C T ZG16B Silent p.V122V 0.16 TCGA-55-8089-01 16 28846896 28846896 G A ATXN2L Silent p.L904L 0.09 TCGA-55-8089-01 16 28909568 28909568 C G ATP2A1 Silent p.G520G 0.06 TCGA-55-8089-01 16 30079983 30079984 - CC ALDOA Frame_Shift_Ins p.L170Pfs*38 0.13 TCGA-55-8089-01 16 31144568 31144568 G A PRSS8 Missense_Mutation p.S82L 0.18 deleterious(0.02) probably_damaging(0.971) TCGA-55-8089-01 16 31308876 31308876 G A ITGAM Silent p.V466V 0.19 TCGA-55-8089-01 16 31373167 31373167 C A ITGAX Silent p.T341T 0.11 TCGA-55-8089-01 16 3142678 3142678 C T ZSCAN10 Silent p.L32L 0.16 TCGA-55-8089-01 16 31471321 31471321 G T ARMC5 Splice_Site p.X159_splice 0.11 TCGA-55-8089-01 16 32077622 32077622 G A IGHV3OR16-9 Silent p.L79L 0.05 TCGA-55-8089-01 16 3254993 3254993 C A OR1F1 Silent p.L249L 0.22 TCGA-55-8089-01 16 3350423 3350423 T A TIGD7 Silent p.V64V 0.28 TCGA-55-8089-01 16 3779424 3779424 C A CREBBP Missense_Mutation p.R1875L 0.23 unknown(0) TCGA-55-8089-01 16 4410488 4410488 C A CORO7 Missense_Mutation p.R660L 0.39 tolerated(0.08) benign(0.015) TCGA-55-8089-01 16 46990794 46990794 A G DNAJA2 3'UTR 0.26 TCGA-55-8089-01 16 46990805 46990805 C A DNAJA2 3'UTR 0.27 TCGA-55-8089-01 16 47143438 47143438 C A NETO2 Missense_Mutation p.S280I 0.15 deleterious(0) possibly_damaging(0.833) TCGA-55-8089-01 16 48139106 48139106 A C ABCC12 Missense_Mutation p.F873V 0.15 deleterious(0) probably_damaging(0.977) TCGA-55-8089-01 16 48149385 48149385 C T ABCC12 Missense_Mutation p.E644K 0.12 tolerated(0.07) benign(0.11) TCGA-55-8089-01 16 48149406 48149406 C A ABCC12 Missense_Mutation p.V637L 0.24 deleterious(0.03) benign(0.123) TCGA-55-8089-01 16 4882859 4882859 C T GLYR1 Missense_Mutation p.M70I 0.22 deleterious(0.04) probably_damaging(0.977) TCGA-55-8089-01 16 49315180 49315180 G T CBLN1 Missense_Mutation p.A66D 0.09 deleterious(0) possibly_damaging(0.9) TCGA-55-8089-01 16 50359687 50359687 C T BRD7 Missense_Mutation p.E435K 0.15 deleterious(0) possibly_damaging(0.834) TCGA-55-8089-01 16 51175016 51175016 A T SALL1 Missense_Mutation p.S373T 0.28 tolerated(0.17) benign(0.01) TCGA-55-8089-01 16 51175377 51175377 G C SALL1 Missense_Mutation p.H252Q 0.07 tolerated(0.16) probably_damaging(0.996) TCGA-55-8089-01 16 53907721 53907721 C T FTO Missense_Mutation p.H307Y 0.28 deleterious(0) probably_damaging(0.989) TCGA-55-8089-01 16 58541899 58541899 G T NDRG4 Missense_Mutation p.G294V 0.09 tolerated(0.07) benign(0.287) TCGA-55-8089-01 16 58752189 58752189 T A GOT2 Missense_Mutation p.S205C 0.20 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 16 68088476 68088476 G - DUS2 Splice_Site p.X89_splice 0.10 TCGA-55-8089-01 16 684726 684726 T A C16orf13 Silent p.G164G 0.26 TCGA-55-8089-01 16 68714952 68714952 G T CDH3 Nonsense_Mutation p.E317* 0.32 TCGA-55-8089-01 16 69711162 69711162 G A NFAT5 Silent p.V538V 0.13 TCGA-55-8089-01 16 70834831 70834831 C A VAC14 5'UTR 0.27 TCGA-55-8089-01 16 70896128 70896128 C A HYDIN Missense_Mutation p.G3867V 0.16 benign(0) TCGA-55-8089-01 16 745064 745064 G A FBXL16 Silent p.I385I 0.20 TCGA-55-8089-01 16 75271093 75271093 C G BCAR1 Missense_Mutation p.Q307H 0.21 tolerated(0.47) probably_damaging(0.945) TCGA-55-8089-01 16 75512471 75512471 C A CHST6 3'UTR 0.13 TCGA-55-8089-01 16 75513271 75513271 C A CHST6 Silent p.L152L 0.24 TCGA-55-8089-01 16 75513272 75513272 A G CHST6 Missense_Mutation p.L152P 0.24 tolerated(0.06) probably_damaging(0.936) TCGA-55-8089-01 16 75665696 75665696 C A KARS Nonsense_Mutation p.E353* 0.24 TCGA-55-8089-01 16 76532486 76532486 G T CNTNAP4 Missense_Mutation p.A681S 0.19 tolerated(1) benign(0) TCGA-55-8089-01 16 76556031 76556031 C G CNTNAP4 Missense_Mutation p.H805D 0.09 tolerated(0.08) possibly_damaging(0.493) TCGA-55-8089-01 16 76587203 76587203 A T CNTNAP4 Missense_Mutation p.T1083S 0.33 deleterious(0.01) possibly_damaging(0.843) TCGA-55-8089-01 16 80666916 80666916 C A CDYL2 Missense_Mutation p.E278D 0.10 tolerated(0.07) benign(0.019) TCGA-55-8089-01 16 87790066 87790066 G A KLHDC4 Missense_Mutation p.S70L 0.12 tolerated(0.21) benign(0.372) TCGA-55-8089-01 17 10322036 10322036 C A MYH8 Missense_Mutation p.R146I 0.19 deleterious(0) benign(0.034) TCGA-55-8089-01 17 10351443 10351443 C A MYH4 Missense_Mutation p.A1553S 0.25 tolerated(0.11) benign(0.007) TCGA-55-8089-01 17 10419289 10419289 G T MYH1 Silent p.P153P 0.16 TCGA-55-8089-01 17 10431126 10431126 C T MYH2 Silent p.E1270E 0.15 TCGA-55-8089-01 17 11556078 11556078 G T DNAH9 Missense_Mutation p.G785V 0.20 benign(0.364) TCGA-55-8089-01 17 11597675 11597675 G A DNAH9 Missense_Mutation p.D1595N 0.18 benign(0.351) TCGA-55-8089-01 17 25748151 25748151 G T TBC1D3P5 RNA 0.22 TCGA-55-8089-01 17 25975922 25975922 G T LGALS9 Nonsense_Mutation p.E328* 0.15 TCGA-55-8089-01 17 26712194 26712194 G A SARM1 Silent p.L476L 0.14 TCGA-55-8089-01 17 26960056 26960056 C G KIAA0100 Missense_Mutation p.E1237Q 0.18 deleterious(0.05) possibly_damaging(0.598) TCGA-55-8089-01 17 26960962 26960962 C A KIAA0100 Silent p.V1071V 0.16 TCGA-55-8089-01 17 26961534 26961534 C A KIAA0100 Splice_Site p.X1024_splice 0.14 TCGA-55-8089-01 17 27020740 27020740 G T SUPT6H Silent p.S1220S 0.10 TCGA-55-8089-01 17 27027368 27027368 G C SUPT6H Silent p.L1548L 0.13 TCGA-55-8089-01 17 27308893 27308893 C T SEZ6 Missense_Mutation p.E74K 0.15 tolerated_low_confidence(0.13) probably_damaging(0.995) TCGA-55-8089-01 17 28380300 28380300 A T EFCAB5 Missense_Mutation p.N443I 0.16 deleterious(0.02) benign(0.098) TCGA-55-8089-01 17 28384845 28384845 C T EFCAB5 Silent p.L839L 0.17 TCGA-55-8089-01 17 28960325 28960325 G C LRRC37BP1 RNA 0.11 TCGA-55-8089-01 17 2908678 2908678 C T RAP1GAP2 Missense_Mutation p.R406W 0.17 deleterious(0) probably_damaging(0.998) TCGA-55-8089-01 17 293231 293231 C A FAM101B Missense_Mutation p.Q53H 0.14 tolerated(0.5) benign(0.001) TCGA-55-8089-01 17 29559881 29559881 G T NF1 Missense_Mutation p.G1160C 0.14 deleterious(0) probably_damaging(0.998) TCGA-55-8089-01 17 30374882 30374882 C T LRRC37B Missense_Mutation p.P782L 0.17 tolerated(0.06) benign(0.008) TCGA-55-8089-01 17 31618846 31618846 G T ASIC2 Silent p.S96S 0.11 TCGA-55-8089-01 17 32483206 32483206 G C ASIC2 Missense_Mutation p.L116V 0.10 tolerated(0.11) benign(0.313) TCGA-55-8089-01 17 33255042 33255042 G C CCT6B 3'UTR 0.23 TCGA-55-8089-01 17 33586312 33586312 G A SLFN5 Silent p.S201S 0.06 TCGA-55-8089-01 17 34171583 34171583 A G TAF15 Missense_Mutation p.Y427C 0.13 deleterious_low_confidence(0) unknown(0) TCGA-55-8089-01 17 34310845 34310845 C T CCL14 Missense_Mutation p.E108K 0.10 tolerated(0.94) benign(0.177) TCGA-55-8089-01 17 34913082 34913082 G C GGNBP2 Missense_Mutation p.E112Q 0.08 deleterious(0.04) benign(0.015) TCGA-55-8089-01 17 34964726 34964726 G A MRM1 Missense_Mutation p.E313K 0.10 tolerated_low_confidence(0.17) benign(0.004) TCGA-55-8089-01 17 36714512 36714512 C A SRCIN1 Nonsense_Mutation p.E718* 0.09 TCGA-55-8089-01 17 37101317 37101317 C T FBXO47 Missense_Mutation p.R230Q 0.13 tolerated(0.96) benign(0.001) TCGA-55-8089-01 17 37619292 37619292 C T CDK12 Missense_Mutation p.S323L 0.10 benign(0.194) TCGA-55-8089-01 17 37809760 37809760 C T STARD3 5'UTR 0.12 TCGA-55-8089-01 17 38911568 38911568 G C KRT25 5'UTR 0.18 TCGA-55-8089-01 17 38927455 38927455 C A KRT26 Missense_Mutation p.V159F 0.18 deleterious(0.03) possibly_damaging(0.774) TCGA-55-8089-01 17 39978046 39978046 G T FKBP10 Missense_Mutation p.D514Y 0.16 deleterious(0) probably_damaging(0.994) TCGA-55-8089-01 17 40914480 40914480 A G RAMP2 Missense_Mutation p.R91G 0.15 deleterious(0.01) benign(0.393) TCGA-55-8089-01 17 42636256 42636256 C T FZD2 Silent p.G400G 0.16 TCGA-55-8089-01 17 43317858 43317858 G A FMNL1 Missense_Mutation p.E366K 0.12 tolerated(0.05) unknown(0) TCGA-55-8089-01 17 44049266 44049266 C A MAPT Missense_Mutation p.P59T 0.10 deleterious(0) benign(0.003) TCGA-55-8089-01 17 45822506 45822506 G T TBX21 Missense_Mutation p.G461V 0.22 deleterious(0.02) possibly_damaging(0.652) TCGA-55-8089-01 17 45895954 45895954 C A OSBPL7 Missense_Mutation p.W133L 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 17 46925764 46925764 C G CALCOCO2 Missense_Mutation p.P146A 0.13 deleterious(0) probably_damaging(0.993) TCGA-55-8089-01 17 47230268 47230268 G A B4GALNT2 Missense_Mutation p.G214S 0.21 deleterious(0) probably_damaging(0.979) TCGA-55-8089-01 17 47587789 47587789 G T NGFR Missense_Mutation p.W195L 0.12 tolerated(0.52) benign(0.045) TCGA-55-8089-01 17 4836007 4836007 G A GP1BA Silent p.R36R 0.17 TCGA-55-8089-01 17 4857125 4857125 C A ENO3 Silent p.L143L 0.16 TCGA-55-8089-01 17 48593971 48593971 A T MYCBPAP Silent p.T82T 0.17 TCGA-55-8089-01 17 48773266 48773266 C T ANKRD40 3'UTR 0.20 TCGA-55-8089-01 17 4905834 4905834 C T KIF1C Missense_Mutation p.R169W 0.23 deleterious(0) possibly_damaging(0.608) TCGA-55-8089-01 17 49067073 49067073 C G SPAG9 Missense_Mutation p.Q926H 0.14 tolerated(0.06) possibly_damaging(0.615) TCGA-55-8089-01 17 5462579 5462579 C A NLRP1 Silent p.L479L 0.22 TCGA-55-8089-01 17 56247633 56247633 T A OR4D2 Missense_Mutation p.L206Q 0.14 deleterious(0) probably_damaging(1) TCGA-55-8089-01 17 56386669 56386669 G A BZRAP1 Nonsense_Mutation p.Q1322* 0.16 TCGA-55-8089-01 17 56492903 56492903 G C RNF43 Silent p.L12L 0.20 TCGA-55-8089-01 17 56589853 56589853 C A MTMR4 Silent p.V36V 0.10 TCGA-55-8089-01 17 59667909 59667909 C A NACA2 Missense_Mutation p.M211I 0.14 deleterious(0.02) benign(0.03) TCGA-55-8089-01 17 60469188 60469188 C A EFCAB3 Missense_Mutation p.Q105K 0.15 tolerated(0.27) benign(0.015) TCGA-55-8089-01 17 60679483 60679483 G A TLK2 Missense_Mutation p.D601N 0.29 deleterious(0.02) possibly_damaging(0.802) TCGA-55-8089-01 17 61972772 61972772 C G CSH1 Intron 0.09 TCGA-55-8089-01 17 61987230 61987230 G T CSHL1 Silent p.L170L 0.15 TCGA-55-8089-01 17 62080999 62080999 C T ICAM2 Intron 0.12 TCGA-55-8089-01 17 62782698 62782698 C T hsa-mir-6080 5'Flank 0.17 TCGA-55-8089-01 17 64685069 64685069 G T PRKCA Missense_Mutation p.W274C 0.16 deleterious(0.01) benign(0.299) TCGA-55-8089-01 17 6674013 6674013 C G XAF1 Missense_Mutation p.P187A 0.19 tolerated(0.08) possibly_damaging(0.477) TCGA-55-8089-01 17 67079363 67079363 C A ABCA6 Nonsense_Mutation p.G1489* 0.10 TCGA-55-8089-01 17 67129976 67129976 C T ABCA6 Silent p.L199L 0.16 TCGA-55-8089-01 17 71165723 71165723 G A SSTR2 Missense_Mutation p.D89N 0.29 deleterious(0) probably_damaging(1) TCGA-55-8089-01 17 72348396 72348396 T C KIF19 Missense_Mutation p.Y633H 0.11 tolerated(0.16) benign(0.082) TCGA-55-8089-01 17 72435981 72435981 G T GPRC5C Missense_Mutation p.W67C 0.30 tolerated(0.19) benign(0.1) TCGA-55-8089-01 17 72878812 72878812 G A FADS6 Missense_Mutation p.A129V 0.26 deleterious(0.02) possibly_damaging(0.72) TCGA-55-8089-01 17 7320601 7320601 G A NLGN2 Missense_Mutation p.R664H 0.14 tolerated(0.13) benign(0.007) TCGA-55-8089-01 17 73487874 73487874 C T KIAA0195 Missense_Mutation p.P497S 0.27 tolerated(1) benign(0) TCGA-55-8089-01 17 73725496 73725496 C G ITGB4 Missense_Mutation p.I239M 0.26 tolerated(0.08) probably_damaging(0.999) TCGA-55-8089-01 17 73748287 73748287 G A ITGB4 Missense_Mutation p.D1276N 0.12 tolerated(0.11) probably_damaging(0.993) TCGA-55-8089-01 17 74570457 74570457 G C ST6GALNAC2 Silent p.L117L 0.17 TCGA-55-8089-01 17 74936543 74936543 T A MGAT5B Missense_Mutation p.N557K 0.27 deleterious(0.02) probably_damaging(0.925) TCGA-55-8089-01 17 7577534 7577534 C A TP53 Missense_Mutation p.R249S 0.16 deleterious(0) probably_damaging(0.994) TCGA-55-8089-01 17 7606575 7606575 T G WRAP53 Missense_Mutation p.L473R 0.12 deleterious(0) probably_damaging(0.953) TCGA-55-8089-01 17 76134765 76134765 A G TMC8 Missense_Mutation p.H592R 0.31 tolerated(0.18) benign(0.003) TCGA-55-8089-01 17 76410977 76410977 G T PGS1 Missense_Mutation p.A474S 0.12 tolerated(0.16) benign(0.004) TCGA-55-8089-01 17 77984509 77984509 G C TBC1D16 Missense_Mutation p.L77V 0.14 deleterious(0.03) benign(0.044) TCGA-55-8089-01 17 80007652 80007652 G A RFNG Silent p.I243I 0.08 TCGA-55-8089-01 18 12274218 12274218 G A CIDEA Missense_Mutation p.E153K 0.11 tolerated(0.05) probably_damaging(0.977) TCGA-55-8089-01 18 13826422 13826422 G A MC5R Missense_Mutation p.A220T 0.25 tolerated(0.08) possibly_damaging(0.764) TCGA-55-8089-01 18 13884688 13884688 G C MC2R Missense_Mutation p.A277G 0.06 deleterious(0) probably_damaging(0.994) TCGA-55-8089-01 18 18629053 18629053 C A ROCK1 Missense_Mutation p.Q138H 0.19 deleterious(0) probably_damaging(0.979) TCGA-55-8089-01 18 19263485 19263485 G A ABHD3 Intron 0.15 TCGA-55-8089-01 18 19348706 19348706 G T MIB1 Missense_Mutation p.R175M 0.10 tolerated(0.08) probably_damaging(0.96) TCGA-55-8089-01 18 25616436 25616436 G A CDH2 Intron 0.15 TCGA-55-8089-01 18 31325447 31325447 C T ASXL3 Silent p.L1879L 0.15 TCGA-55-8089-01 18 47108104 47108104 C T LIPG Intron 0.14 TCGA-55-8089-01 18 48593533 48593533 G C SMAD4 Missense_Mutation p.K428N 0.11 deleterious(0) probably_damaging(0.989) TCGA-55-8089-01 18 55322637 55322637 C A ATP8B1 Missense_Mutation p.G907V 0.20 deleterious(0) probably_damaging(1) TCGA-55-8089-01 18 580909 580909 G A CETN1 Silent p.K167K 0.05 TCGA-55-8089-01 18 61261696 61261696 G T SERPINB13 Nonsense_Mutation p.E194* 0.21 TCGA-55-8089-01 18 7231274 7231274 G C LRRC30 Silent p.R46R 0.12 TCGA-55-8089-01 18 72998506 72998506 G C TSHZ1 Missense_Mutation p.D337H 0.16 deleterious(0.05) possibly_damaging(0.897) TCGA-55-8089-01 18 8819028 8819028 G C SOGA2 Missense_Mutation p.R976P 0.15 tolerated(0.17) benign(0.014) TCGA-55-8089-01 18 9516881 9516881 G A RALBP1 Missense_Mutation p.D95N 0.13 deleterious(0) possibly_damaging(0.69) TCGA-55-8089-01 19 11144163 11144163 G C SMARCA4 Missense_Mutation p.Q1248H 0.19 probably_damaging(0.998) TCGA-55-8089-01 19 11516004 11516004 C T RGL3 Silent p.V365V 0.18 TCGA-55-8089-01 19 11560097 11560097 G T PRKCSH Missense_Mutation p.G486V 0.17 deleterious(0.01) probably_damaging(0.941) TCGA-55-8089-01 19 11567948 11567948 G C ELAVL3 Silent p.L243L 0.13 TCGA-55-8089-01 19 12491347 12491347 G T CTD-3105H18.14 3'UTR 0.19 TCGA-55-8089-01 19 12816141 12816141 G C TNPO2 Silent p.L645L 0.24 TCGA-55-8089-01 19 13335575 13335575 C T CACNA1A Silent p.R1879R 0.24 TCGA-55-8089-01 19 13335577 13335577 G T CACNA1A Silent p.R1879R 0.26 TCGA-55-8089-01 19 13368268 13368268 C T CACNA1A Missense_Mutation p.V1496M 0.24 probably_damaging(0.934) TCGA-55-8089-01 19 14080948 14080948 C T RFX1 Missense_Mutation p.V452M 0.06 deleterious(0) probably_damaging(0.998) TCGA-55-8089-01 19 14627572 14627572 G T DNAJB1 Missense_Mutation p.H166Q 0.09 deleterious(0.01) possibly_damaging(0.706) TCGA-55-8089-01 19 15360063 15360063 C A BRD4 Intron 0.15 TCGA-55-8089-01 19 15839715 15839715 C G OR10H2 Missense_Mutation p.P288A 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-55-8089-01 19 16006403 16006403 G T CYP4F2 Missense_Mutation p.Q86K 0.19 tolerated(0.27) benign(0.008) TCGA-55-8089-01 19 17746902 17746902 G T UNC13A Missense_Mutation p.S1049Y 0.45 tolerated(0.29) probably_damaging(0.999) TCGA-55-8089-01 19 19654856 19654856 G T CILP2 Missense_Mutation p.G501V 0.19 deleterious(0) probably_damaging(1) TCGA-55-8089-01 19 19760428 19760428 G A ATP13A1 Silent p.L860L 0.08 TCGA-55-8089-01 19 20002572 20002572 C T ZNF253 Silent p.F172F 0.24 TCGA-55-8089-01 19 23318815 23318815 A T ZNF730 Nonsense_Mutation p.K66* 0.11 TCGA-55-8089-01 19 30102791 30102791 C T POP4 Missense_Mutation p.H103Y 0.21 deleterious(0) possibly_damaging(0.878) TCGA-55-8089-01 19 30106335 30106335 A T POP4 3'UTR 0.12 TCGA-55-8089-01 19 31768851 31768851 C A TSHZ3 Missense_Mutation p.K616N 0.11 deleterious(0) probably_damaging(0.997) TCGA-55-8089-01 19 34895852 34895852 C T RP11-618P17.4 Missense_Mutation p.S127F 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-8089-01 19 35230481 35230481 G C ZNF181 Missense_Mutation p.E62Q 0.10 deleterious(0.03) probably_damaging(0.968) TCGA-55-8089-01 19 362422 362422 G T THEG Silent p.P306P 0.19 TCGA-55-8089-01 19 36269384 36269384 C G ARHGAP33 Missense_Mutation p.L97V 0.14 tolerated_low_confidence(0.14) possibly_damaging(0.567) TCGA-55-8089-01 19 36290957 36290957 G T PRODH2 Silent p.R532R 0.24 TCGA-55-8089-01 19 36357471 36357471 A T KIRREL2 3'UTR 0.19 TCGA-55-8089-01 19 36831172 36831172 T A ZFP14 Missense_Mutation p.Q519L 0.11 tolerated(0.69) benign(0.202) TCGA-55-8089-01 19 36963907 36963907 C A ZNF566 Silent p.G47G 0.17 TCGA-55-8089-01 19 37129869 37129869 G A ZNF461 Nonsense_Mutation p.Q460* 0.07 TCGA-55-8089-01 19 38028332 38028332 A T ZNF793 Missense_Mutation p.T258S 0.22 tolerated(0.53) benign(0.026) TCGA-55-8089-01 19 38160762 38160762 C T ZNF781 Silent p.K96K 0.18 TCGA-55-8089-01 19 39023333 39023333 G T RYR1 Missense_Mutation p.G3739V 0.18 benign(0.094) TCGA-55-8089-01 19 39423062 39423062 C T MRPS12 Missense_Mutation p.R47W 0.13 deleterious(0.01) possibly_damaging(0.72) TCGA-55-8089-01 19 40433636 40433636 C A FCGBP Silent p.G211G 0.16 TCGA-55-8089-01 19 40478344 40478344 G A PSMC4 Silent p.L68L 0.15 TCGA-55-8089-01 19 42125584 42125584 T A CEACAM4 3'UTR 0.27 TCGA-55-8089-01 19 42125734 42125734 T A CEACAM4 Missense_Mutation p.Q235L 0.11 deleterious(0.02) benign(0) TCGA-55-8089-01 19 42125735 42125735 G T CEACAM4 Missense_Mutation p.Q235K 0.12 tolerated(0.11) benign(0) TCGA-55-8089-01 19 422374 422374 C A SHC2 Missense_Mutation p.Q464H 0.37 deleterious(0.01) possibly_damaging(0.896) TCGA-55-8089-01 19 42351804 42351804 G T DMRTC2 Silent p.L75L 0.09 TCGA-55-8089-01 19 42866259 42866259 C T MEGF8 Missense_Mutation p.S1846F 0.22 tolerated(0.06) benign(0.03) TCGA-55-8089-01 19 43237000 43237000 A T PSG3 Nonsense_Mutation p.Y215* 0.13 TCGA-55-8089-01 19 43244553 43244553 G C PSG3 5'UTR 0.15 TCGA-55-8089-01 19 43382294 43382294 C G PSG1 Missense_Mutation p.W67C 0.10 deleterious(0) probably_damaging(0.993) TCGA-55-8089-01 19 43679606 43679606 G A PSG5 Missense_Mutation p.P242L 0.18 deleterious(0) probably_damaging(1) TCGA-55-8089-01 19 44001309 44001309 G C PHLDB3 Silent p.P262P 0.14 TCGA-55-8089-01 19 44590044 44590044 C G ZNF284 Missense_Mutation p.S138C 0.11 tolerated(0.11) probably_damaging(0.971) TCGA-55-8089-01 19 44807574 44807574 C G ZNF235 5'UTR 0.19 TCGA-55-8089-01 19 44891245 44891245 G A ZNF285 Missense_Mutation p.L388F 0.07 tolerated(0.21) probably_damaging(0.987) TCGA-55-8089-01 19 45721578 45721578 C A EXOC3L2 Splice_Site p.X181_splice 0.20 TCGA-55-8089-01 19 46180282 46180282 G T GIPR Nonsense_Mutation p.E237* 0.09 TCGA-55-8089-01 19 46511486 46511486 G T CCDC61 Missense_Mutation p.G160C 0.21 deleterious(0.01) possibly_damaging(0.669) TCGA-55-8089-01 19 46915828 46915828 C G CCDC8 Missense_Mutation p.R80S 0.20 probably_damaging(0.999) TCGA-55-8089-01 19 47491298 47491298 G C ARHGAP35 Missense_Mutation p.E1293D 0.13 tolerated(0.82) benign(0.007) TCGA-55-8089-01 19 47918039 47918039 G T MEIS3 Silent p.R178R 0.17 TCGA-55-8089-01 19 47941138 47941138 C G SLC8A2 Missense_Mutation p.E660Q 0.14 tolerated(0.18) possibly_damaging(0.848) TCGA-55-8089-01 19 47969421 47969421 G T SLC8A2 Silent p.V80V 0.16 TCGA-55-8089-01 19 48630602 48630602 C A LIG1 Missense_Mutation p.V646L 0.13 deleterious(0.01) benign(0.118) TCGA-55-8089-01 19 48878966 48878966 C T SYNGR4 Missense_Mutation p.A143V 0.12 deleterious(0.02) benign(0.376) TCGA-55-8089-01 19 48925194 48925194 C G GRIN2D Silent p.L748L 0.22 TCGA-55-8089-01 19 49368804 49368804 C G PLEKHA4 Missense_Mutation p.D50H 0.16 deleterious(0) probably_damaging(0.993) TCGA-55-8089-01 19 49535283 49535283 C T CGB2 5'UTR 0.13 TCGA-55-8089-01 19 51133105 51133105 C A SYT3 Missense_Mutation p.G333V 0.14 deleterious(0) probably_damaging(0.997) TCGA-55-8089-01 19 51171781 51171781 C A SHANK1 Missense_Mutation p.A1146S 0.11 unknown(0) TCGA-55-8089-01 19 51920073 51920073 G T SIGLEC10 Missense_Mutation p.L185I 0.12 tolerated(0.2) benign(0.188) TCGA-55-8089-01 19 51994961 51994961 C G SIGLEC12 Missense_Mutation p.R574S 0.18 deleterious(0.01) benign(0.12) TCGA-55-8089-01 19 53208705 53208705 C A ZNF611 Nonsense_Mutation p.E535* 0.15 TCGA-55-8089-01 19 53432467 53432467 C T ZNF321P Missense_Mutation p.E131K 0.14 tolerated(1) benign(0.005) TCGA-55-8089-01 19 54080922 54080922 C T ZNF331 Missense_Mutation p.L370F 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-55-8089-01 19 54219887 54219887 G T MIR521-2 RNA 0.13 TCGA-55-8089-01 19 54377032 54377032 C T MYADM Silent p.L83L 0.12 TCGA-55-8089-01 19 54445332 54445332 G T CACNG7 Missense_Mutation p.A205S 0.18 tolerated(0.37) benign(0.02) TCGA-55-8089-01 19 54634744 54634744 G T PRPF31 Nonsense_Mutation p.E461* 0.16 TCGA-55-8089-01 19 54744863 54744863 G C LILRA6 Missense_Mutation p.R267G 0.05 tolerated(0.18) benign(0.072) TCGA-55-8089-01 19 55014101 55014101 C G LAIR2 5'UTR 0.14 TCGA-55-8089-01 19 55147967 55147967 C A LILRB1 Missense_Mutation p.P559H 0.13 deleterious(0.02) possibly_damaging(0.881) TCGA-55-8089-01 19 55220908 55220908 G T AC098784.2 3'Flank 0.07 TCGA-55-8089-01 19 55451578 55451578 C A NLRP7 Silent p.T203T 0.20 TCGA-55-8089-01 19 55489144 55489144 C A NLRP2 Missense_Mutation p.P117H 0.08 tolerated(0.11) benign(0.002) TCGA-55-8089-01 19 55665551 55665551 G T TNNI3 Silent p.I132I 0.18 TCGA-55-8089-01 19 55777551 55777551 G C HSPBP1 Silent p.V248V 0.20 TCGA-55-8089-01 19 55816696 55816696 C A BRSK1 Silent p.T575T 0.13 TCGA-55-8089-01 19 56047541 56047541 C A SBK2 Missense_Mutation p.A41S 0.10 tolerated(0.37) unknown(0) TCGA-55-8089-01 19 56539747 56539747 G C NLRP5 Missense_Mutation p.Q716H 0.15 tolerated(0.08) benign(0.06) TCGA-55-8089-01 19 56733210 56733210 C A ZSCAN5A Nonsense_Mutation p.E409* 0.23 TCGA-55-8089-01 19 57286462 57286462 G T ZIM2 Missense_Mutation p.S393Y 0.21 deleterious(0.05) benign(0.074) TCGA-55-8089-01 19 57334192 57334192 C A PEG3 Missense_Mutation p.W165L 0.29 tolerated(0.1) benign(0) TCGA-55-8089-01 19 5746013 5746013 C A CATSPERD Silent p.P249P 0.13 TCGA-55-8089-01 19 57646938 57646938 C G ZIM3 Missense_Mutation p.C256S 0.10 deleterious(0) probably_damaging(0.995) TCGA-55-8089-01 19 57723415 57723415 G T ZNF264 Missense_Mutation p.C317F 0.33 deleterious(0) probably_damaging(1) TCGA-55-8089-01 19 58189838 58189838 C T ZSCAN4 Silent p.H289H 0.15 TCGA-55-8089-01 19 58453765 58453765 C A ZNF256 Missense_Mutation p.Q137H 0.09 tolerated(0.08) probably_damaging(0.948) TCGA-55-8089-01 19 58549579 58549579 G C ZSCAN1 Intron 0.19 TCGA-55-8089-01 19 58722997 58722997 G A ZNF274 Silent p.Q307Q 0.14 TCGA-55-8089-01 19 58863709 58863709 G A A1BG Missense_Mutation p.R185W 0.20 deleterious(0) probably_damaging(0.993) TCGA-55-8089-01 19 6007126 6007126 C A RFX2 Silent p.L433L 0.14 TCGA-55-8089-01 19 6307166 6307166 G C ACER1 Missense_Mutation p.I208M 0.19 tolerated(0.07) probably_damaging(0.909) TCGA-55-8089-01 19 6416829 6416829 C A KHSRP Missense_Mutation p.G416V 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-55-8089-01 19 6926404 6926404 C T EMR1 Silent p.L672L 0.12 TCGA-55-8089-01 19 7805806 7805806 G T CD209 3'UTR 0.24 TCGA-55-8089-01 19 7809833 7809833 C T CD209 Silent p.E298E 0.21 TCGA-55-8089-01 19 8191430 8191430 G A FBN3 Nonsense_Mutation p.Q826* 0.08 TCGA-55-8089-01 19 8468397 8468397 G T RAB11B Silent p.T204T 0.20 TCGA-55-8089-01 19 9013878 9013878 A C MUC16 Missense_Mutation p.S12838A 0.23 possibly_damaging(0.882) TCGA-55-8089-01 19 9049087 9049087 G T MUC16 Missense_Mutation p.D10848E 0.16 benign(0.007) TCGA-55-8089-01 19 9058614 9058614 G T MUC16 Missense_Mutation p.A9611D 0.17 unknown(0) TCGA-55-8089-01 19 9237084 9237084 T C OR7G3 Silent p.L181L 0.20 TCGA-55-8089-01 1 101705002 101705002 G A S1PR1 Silent p.G154G 0.13 TCGA-55-8089-01 1 103471846 103471846 G T COL11A1 Missense_Mutation p.P570H 0.16 unknown(0) TCGA-55-8089-01 1 109167360 109167360 T A FAM102B Silent p.L182L 0.22 TCGA-55-8089-01 1 109794955 109794955 G A CELSR2 Missense_Mutation p.E752K 0.12 deleterious(0.01) possibly_damaging(0.842) TCGA-55-8089-01 1 110737408 110737408 C - SLC6A17 Intron 0.10 TCGA-55-8089-01 1 11104996 11104996 G T MASP2 Intron 0.17 TCGA-55-8089-01 1 11217283 11217283 C G MTOR Missense_Mutation p.K1465N 0.06 tolerated(0.1) possibly_damaging(0.749) TCGA-55-8089-01 1 114448165 114448165 G T DCLRE1B 5'UTR 0.15 TCGA-55-8089-01 1 114450663 114450663 G T DCLRE1B Nonsense_Mutation p.E130* 0.18 TCGA-55-8089-01 1 11766490 11766490 C A DRAXIN Silent p.R59R 0.24 TCGA-55-8089-01 1 11766739 11766740 CG - DRAXIN Frame_Shift_Del p.R142Qfs*53 0.32 TCGA-55-8089-01 1 118420733 118420733 C T GDAP2 Silent p.L448L 0.21 TCGA-55-8089-01 1 11980294 11980294 C T KIAA2013 3'UTR 0.17 TCGA-55-8089-01 1 12169655 12169655 G A TNFRSF8 Missense_Mutation p.A152T 0.12 tolerated(0.15) benign(0.027) TCGA-55-8089-01 1 12726521 12726521 C T AADACL4 Silent p.I333I 0.15 TCGA-55-8089-01 1 13910505 13910505 G C PDPN Missense_Mutation p.E69Q 0.18 deleterious(0.01) possibly_damaging(0.859) TCGA-55-8089-01 1 1421952 1421952 A T ATAD3B Missense_Mutation p.Y373F 0.07 tolerated(0.08) possibly_damaging(0.666) TCGA-55-8089-01 1 144886179 144886179 C G PDE4DIP Missense_Mutation p.E1019Q 0.04 tolerated(0.7) benign(0.037) TCGA-55-8089-01 1 145075750 145075750 C T PDE4DIP Missense_Mutation p.R38Q 0.06 deleterious_low_confidence(0.04) possibly_damaging(0.785) TCGA-55-8089-01 1 145296440 145296440 G T NBPF10 Missense_Mutation p.R121L 0.10 probably_damaging(0.958) TCGA-55-8089-01 1 145578988 145578988 A T PIAS3 Missense_Mutation p.Q189L 0.15 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 1 147380663 147380663 G T GJA8 Missense_Mutation p.C194F 0.15 deleterious(0) probably_damaging(0.998) TCGA-55-8089-01 1 149784918 149784918 C G HIST2H3D Missense_Mutation p.D107H 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-8089-01 1 150967115 150967115 T A ANXA9 Silent p.L305L 0.17 TCGA-55-8089-01 1 151288396 151288396 C T PI4KB Missense_Mutation p.E200K 0.13 tolerated(0.09) benign(0.268) TCGA-55-8089-01 1 151666095 151666095 C T SNX27 3'UTR 0.16 TCGA-55-8089-01 1 152084342 152084342 G T TCHH Missense_Mutation p.Q451K 0.19 unknown(0) TCGA-55-8089-01 1 152084849 152084849 C G TCHH Missense_Mutation p.E282Q 0.15 unknown(0) TCGA-55-8089-01 1 152192787 152192787 C A HRNR Missense_Mutation p.G440C 0.15 unknown(0) TCGA-55-8089-01 1 152284067 152284067 G T FLG Missense_Mutation p.H1099N 0.14 probably_damaging(0.956) TCGA-55-8089-01 1 152733593 152733593 C A KPRP Missense_Mutation p.P510Q 0.14 deleterious_low_confidence(0.02) benign(0.051) TCGA-55-8089-01 1 152770314 152770314 A T LCE1D Missense_Mutation p.K15M 0.17 unknown(0) TCGA-55-8089-01 1 153084924 153084924 T A SPRR2F 3'UTR 0.22 TCGA-55-8089-01 1 153653761 153653761 G A NPR1 Missense_Mutation p.D343N 0.11 tolerated(0.36) possibly_damaging(0.697) TCGA-55-8089-01 1 153657542 153657542 C A NPR1 Missense_Mutation p.S529R 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-55-8089-01 1 155034982 155034982 C T ADAM15 3'UTR 0.15 TCGA-55-8089-01 1 155319162 155319162 C T ASH1L Missense_Mutation p.E2504K 0.11 deleterious_low_confidence(0.02) benign(0.148) TCGA-55-8089-01 1 156021556 156021556 C T UBQLN4 Silent p.L67L 0.12 TCGA-55-8089-01 1 1562061 1562061 G A MIB2 Missense_Mutation p.R450Q 0.28 tolerated(0.35) possibly_damaging(0.66) TCGA-55-8089-01 1 156351228 156351228 A T RHBG Missense_Mutation p.Y255F 0.11 tolerated(0.09) possibly_damaging(0.814) TCGA-55-8089-01 1 156779153 156779153 C T SH2D2A Missense_Mutation p.E292K 0.16 deleterious(0.01) probably_damaging(0.967) TCGA-55-8089-01 1 156779473 156779473 C G SH2D2A Missense_Mutation p.E242Q 0.19 tolerated(0.07) possibly_damaging(0.477) TCGA-55-8089-01 1 157490917 157490917 C A FCRL5 Missense_Mutation p.G802V 0.14 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 1 158152891 158152891 G T CD1D Silent p.L277L 0.16 TCGA-55-8089-01 1 158325656 158325656 G T CD1E Missense_Mutation p.G222V 0.09 deleterious(0.01) benign(0.414) TCGA-55-8089-01 1 158390249 158390249 C A OR10K2 Missense_Mutation p.M136I 0.09 deleterious(0.02) probably_damaging(0.989) TCGA-55-8089-01 1 158624491 158624491 G T SPTA1 Silent p.V982V 0.17 TCGA-55-8089-01 1 158669635 158669635 A T OR6K2 Missense_Mutation p.F270I 0.11 tolerated(0.4) benign(0.029) TCGA-55-8089-01 1 158747028 158747028 G C OR6N2 Missense_Mutation p.P133R 0.14 deleterious(0) probably_damaging(0.951) TCGA-55-8089-01 1 158906841 158906841 G C PYHIN1 Missense_Mutation p.Q47H 0.15 deleterious(0.01) probably_damaging(0.968) TCGA-55-8089-01 1 160093180 160093180 A T ATP1A2 Missense_Mutation p.M119L 0.15 tolerated(0.31) benign(0.001) TCGA-55-8089-01 1 160098507 160098507 G A ATP1A2 Silent p.A361A 0.06 TCGA-55-8089-01 1 160259998 160259998 C G COPA Missense_Mutation p.E1217D 0.16 deleterious(0.05) benign(0.259) TCGA-55-8089-01 1 160523269 160523269 C A CD84 Missense_Mutation p.R220L 0.09 tolerated(0.27) benign(0.312) TCGA-55-8089-01 1 160786594 160786594 C T LY9 Missense_Mutation p.T428I 0.14 tolerated(0.33) benign(0.347) TCGA-55-8089-01 1 161200619 161200619 G A NR1I3 Nonsense_Mutation p.R310* 0.13 TCGA-55-8089-01 1 161205757 161205757 T A NR1I3 Missense_Mutation p.S40C 0.17 deleterious(0.01) possibly_damaging(0.563) TCGA-55-8089-01 1 161596123 161596123 C T FCGR3B Missense_Mutation p.S166N 0.11 deleterious(0) possibly_damaging(0.828) TCGA-55-8089-01 1 161680614 161680614 G - FCRLA Frame_Shift_Del p.E72Rfs*4 0.20 TCGA-55-8089-01 1 162551172 162551172 G C UAP1 Missense_Mutation p.D253H 0.14 deleterious(0) probably_damaging(1) TCGA-55-8089-01 1 162551193 162551193 G T UAP1 Missense_Mutation p.A260S 0.14 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 1 162722885 162722885 C A DDR2 Missense_Mutation p.A28D 0.11 deleterious(0.04) benign(0.006) TCGA-55-8089-01 1 16380262 16380262 G T CLCNKB Missense_Mutation p.S584I 0.12 deleterious(0) probably_damaging(0.949) TCGA-55-8089-01 1 16559419 16559419 G A RSG1 Missense_Mutation p.S120F 0.17 tolerated(0.21) benign(0.098) TCGA-55-8089-01 1 165860550 165860550 C T UCK2 Missense_Mutation p.S116F 0.12 deleterious(0) possibly_damaging(0.809) TCGA-55-8089-01 1 167096052 167096052 G T DUSP27 Nonsense_Mutation p.G562* 0.14 TCGA-55-8089-01 1 167654678 167654678 C A RCSD1 Silent p.T43T 0.12 TCGA-55-8089-01 1 167673986 167673986 G A RCSD1 3'UTR 0.15 TCGA-55-8089-01 1 168260635 168260635 G T TBX19 Silent p.L147L 0.17 TCGA-55-8089-01 1 169390839 169390839 T A CCDC181 Missense_Mutation p.H277L 0.16 tolerated(0.44) benign(0.004) TCGA-55-8089-01 1 16952846 16952846 A T CROCCP2 3'Flank 0.11 TCGA-55-8089-01 1 169698701 169698701 C G SELE Missense_Mutation p.E277Q 0.16 tolerated(0.48) possibly_damaging(0.616) TCGA-55-8089-01 1 171621514 171621514 T A MYOC Missense_Mutation p.T80S 0.09 tolerated(0.47) benign(0.001) TCGA-55-8089-01 1 175087877 175087877 G T TNN Missense_Mutation p.R856M 0.15 deleterious(0) probably_damaging(0.976) TCGA-55-8089-01 1 175325571 175325571 C A TNR Missense_Mutation p.G1001V 0.15 deleterious(0) probably_damaging(1) TCGA-55-8089-01 1 175365731 175365731 C G TNR Missense_Mutation p.A397P 0.21 deleterious(0) probably_damaging(0.971) TCGA-55-8089-01 1 17599915 17599915 G A PADI3 Silent p.L376L 0.24 TCGA-55-8089-01 1 176526088 176526088 G T PAPPA2 Missense_Mutation p.Q210H 0.11 tolerated(0.24) benign(0.054) TCGA-55-8089-01 1 176526089 176526089 G T PAPPA2 Nonsense_Mutation p.G211* 0.11 TCGA-55-8089-01 1 179985001 179985001 G T CEP350 Missense_Mutation p.Q690H 0.22 probably_damaging(0.999) TCGA-55-8089-01 1 184801015 184801015 C T FAM129A Missense_Mutation p.G228D 0.17 tolerated(0.06) possibly_damaging(0.646) TCGA-55-8089-01 1 1849480 1849480 G A TMEM52 Silent p.Y157Y 0.05 TCGA-55-8089-01 1 186008125 186008125 C A HMCN1 Missense_Mutation p.L2006M 0.12 probably_damaging(0.998) TCGA-55-8089-01 1 186044023 186044023 G T HMCN1 Missense_Mutation p.V2764F 0.15 possibly_damaging(0.883) TCGA-55-8089-01 1 186092172 186092172 C G HMCN1 Missense_Mutation p.P4107A 0.14 benign(0.014) TCGA-55-8089-01 1 186329077 186329077 C T TPR Missense_Mutation p.E415K 0.16 benign(0.292) TCGA-55-8089-01 1 19526215 19526215 G A UBR4 Missense_Mutation p.A103V 0.08 probably_damaging(0.989) TCGA-55-8089-01 1 196621179 196621179 C T CFH 5'UTR 0.17 TCGA-55-8089-01 1 196876501 196876501 C T CFHR4 Silent p.S223S 0.10 TCGA-55-8089-01 1 197898328 197898328 C T LHX9 Missense_Mutation p.S378F 0.10 deleterious(0) benign(0.418) TCGA-55-8089-01 1 200842240 200842240 G T GPR25 Missense_Mutation p.E25D 0.22 tolerated(0.49) benign(0.001) TCGA-55-8089-01 1 201337307 201337307 T A TNNT2 Missense_Mutation p.E39V 0.14 tolerated(0.05) unknown(0) TCGA-55-8089-01 1 201777868 201777868 T C NAV1 Missense_Mutation p.L1359P 0.15 deleterious(0) probably_damaging(1) TCGA-55-8089-01 1 203045527 203045527 C A PPFIA4 3'UTR 0.18 TCGA-55-8089-01 1 203456003 203456003 C A PRELP Silent p.V381V 0.14 TCGA-55-8089-01 1 204379939 204379939 C A PPP1R15B Missense_Mutation p.G201C 0.15 tolerated(0.05) possibly_damaging(0.478) TCGA-55-8089-01 1 204403029 204403029 G A PIK3C2B Silent p.N1245N 0.15 TCGA-55-8089-01 1 204588135 204588135 C A LRRN2 Missense_Mutation p.R329L 0.20 tolerated(0.55) possibly_damaging(0.681) TCGA-55-8089-01 1 204953167 204953167 C T NFASC Intron 0.16 TCGA-55-8089-01 1 207085252 207085252 G T FAIM3 Missense_Mutation p.S178Y 0.12 tolerated(0.07) benign(0.352) TCGA-55-8089-01 1 208061237 208061237 C A CD34 Missense_Mutation p.G335V 0.14 deleterious(0) possibly_damaging(0.856) TCGA-55-8089-01 1 208073292 208073292 G T CD34 Missense_Mutation p.Q46K 0.09 tolerated(0.93) benign(0.034) TCGA-55-8089-01 1 208212980 208212980 C A PLXNA2 Nonsense_Mutation p.E1496* 0.14 TCGA-55-8089-01 1 20987829 20987829 G A DDOST Silent p.T22T 0.13 TCGA-55-8089-01 1 20998491 20998491 C T KIF17 Missense_Mutation p.E888K 0.14 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 1 212799027 212799027 C A FAM71A Missense_Mutation p.P270T 0.17 tolerated(0.59) benign(0.001) TCGA-55-8089-01 1 213349762 213349762 C T RPS6KC1 Missense_Mutation p.S324L 0.11 tolerated(0.07) probably_damaging(0.949) TCGA-55-8089-01 1 213445953 213445953 G T RPS6KC1 Silent p.V1059V 0.18 TCGA-55-8089-01 1 215848598 215848598 C G USH2A Missense_Mutation p.E4219Q 0.24 benign(0.14) TCGA-55-8089-01 1 215990524 215990524 C A USH2A Missense_Mutation p.D3129Y 0.16 possibly_damaging(0.482) TCGA-55-8089-01 1 216373186 216373186 G T USH2A Nonsense_Mutation p.Y1198* 0.18 TCGA-55-8089-01 1 220088723 220088723 C A SLC30A10 3'UTR 0.14 TCGA-55-8089-01 1 22211334 22211334 G A HSPG2 Missense_Mutation p.T478I 0.16 possibly_damaging(0.882) TCGA-55-8089-01 1 222801655 222801655 C T MIA3 Nonsense_Mutation p.Q365* 0.17 TCGA-55-8089-01 1 226374379 226374379 C T ACBD3 5'UTR 0.21 TCGA-55-8089-01 1 227083208 227083208 C G PSEN2 Missense_Mutation p.I425M 0.15 deleterious(0.04) possibly_damaging(0.666) TCGA-55-8089-01 1 228109290 228109290 C A WNT9A Missense_Mutation p.V343L 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-55-8089-01 1 228109291 228109291 C G WNT9A Missense_Mutation p.Q342H 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-55-8089-01 1 228596765 228596765 G T TRIM17 Intron 0.22 TCGA-55-8089-01 1 229625782 229625782 G A NUP133 Silent p.L372L 0.15 TCGA-55-8089-01 1 229730651 229730651 C A TAF5L Missense_Mutation p.W388L 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 1 229750119 229750119 C A TAF5L Missense_Mutation p.Q37H 0.17 deleterious(0) probably_damaging(0.962) TCGA-55-8089-01 1 229787045 229787045 C T URB2 Missense_Mutation p.R1405W 0.13 deleterious(0) possibly_damaging(0.663) TCGA-55-8089-01 1 231042692 231042692 G A TTC13 Silent p.L848L 0.09 TCGA-55-8089-01 1 231475546 231475546 G A SPRTN Missense_Mutation p.G85S 0.18 tolerated(0.1) benign(0.444) TCGA-55-8089-01 1 233136138 233136138 G A PCNXL2 Silent p.L1747L 0.09 TCGA-55-8089-01 1 23420801 23420801 C G LUZP1 5'UTR 0.12 TCGA-55-8089-01 1 235860540 235860540 C A LYST Missense_Mutation p.W3469C 0.21 deleterious(0) probably_damaging(0.997) TCGA-55-8089-01 1 236205579 236205579 C A NID1 Missense_Mutation p.G256W 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 1 236766623 236766623 C A HEATR1 Nonsense_Mutation p.E66* 0.13 TCGA-55-8089-01 1 236767251 236767251 C A HEATR1 Intron 0.12 TCGA-55-8089-01 1 23693626 23693626 G A ZNF436 Silent p.L23L 0.05 TCGA-55-8089-01 1 237670089 237670089 T C RYR2 Missense_Mutation p.I898T 0.17 probably_damaging(0.984) TCGA-55-8089-01 1 237947705 237947705 G T RYR2 Silent p.P4231P 0.21 TCGA-55-8089-01 1 237948162 237948162 C A RYR2 Missense_Mutation p.L4384M 0.14 probably_damaging(0.99) TCGA-55-8089-01 1 237969469 237969469 G T RYR2 Missense_Mutation p.M4728I 0.12 benign(0.322) TCGA-55-8089-01 1 238049079 238049079 G C ZP4 Missense_Mutation p.T316S 0.13 tolerated(0.69) benign(0.145) TCGA-55-8089-01 1 238051686 238051686 C A ZP4 Missense_Mutation p.E175D 0.15 tolerated(0.26) benign(0.081) TCGA-55-8089-01 1 24419597 24419597 C T MYOM3 Silent p.G310G 0.11 TCGA-55-8089-01 1 244572886 244572886 C T ADSS 3'UTR 0.07 TCGA-55-8089-01 1 244756870 244756870 G C C1orf101 Missense_Mutation p.V765L 0.12 tolerated(0.87) benign(0.004) TCGA-55-8089-01 1 247024452 247024452 C A AHCTF1 Missense_Mutation p.G1303V 0.13 tolerated(0.14) benign(0.117) TCGA-55-8089-01 1 247587423 247587423 G C NLRP3 Silent p.G226G 0.13 TCGA-55-8089-01 1 247587732 247587732 C A NLRP3 Missense_Mutation p.D329E 0.15 tolerated(1) probably_damaging(0.991) TCGA-55-8089-01 1 247875245 247875245 G - OR6F1 Frame_Shift_Del p.A273Lfs*5 0.17 TCGA-55-8089-01 1 247921082 247921082 C A OR1C1 Silent p.T209T 0.19 TCGA-55-8089-01 1 248129463 248129463 C A OR2AK2 Missense_Mutation p.P277Q 0.11 deleterious(0) probably_damaging(1) TCGA-55-8089-01 1 248308857 248308857 G C OR2M5 Missense_Mutation p.M136I 0.16 deleterious(0.01) benign(0.057) TCGA-55-8089-01 1 248308867 248308868 - T OR2M5 Frame_Shift_Ins p.C141Lfs*19 0.15 TCGA-55-8089-01 1 248525708 248525708 C A OR2T4 Missense_Mutation p.H276N 0.12 deleterious(0) probably_damaging(0.982) TCGA-55-8089-01 1 249212453 249212453 A T PGBD2 Missense_Mutation p.Q557L 0.15 deleterious(0.01) possibly_damaging(0.575) TCGA-55-8089-01 1 25718552 25718552 C T RHCE Silent p.K189K 0.16 TCGA-55-8089-01 1 26288348 26288348 C T PAFAH2 3'UTR 0.22 TCGA-55-8089-01 1 26603783 26603783 G A CEP85 Silent p.%3D 0.12 TCGA-55-8089-01 1 27101453 27101453 C T ARID1A Nonsense_Mutation p.Q1579* 0.11 TCGA-55-8089-01 1 28598805 28598805 G C SESN2 Missense_Mutation p.R122P 0.04 deleterious(0) probably_damaging(1) TCGA-55-8089-01 1 28793058 28793058 C G PHACTR4 Missense_Mutation p.S211C 0.12 deleterious(0) probably_damaging(0.93) TCGA-55-8089-01 1 2939021 2939021 C T ACTRT2 Silent p.H257H 0.10 TCGA-55-8089-01 1 32256642 32256642 C A SPOCD1 Missense_Mutation p.Q1071H 0.13 deleterious(0) probably_damaging(0.931) TCGA-55-8089-01 1 32842119 32842119 C G BSDC1 Silent p.V317V 0.15 TCGA-55-8089-01 1 34192210 34192210 G T CSMD2 Silent p.A775A 0.15 TCGA-55-8089-01 1 36643656 36643656 C T MAP7D1 Missense_Mutation p.A521V 0.17 benign(0.013) TCGA-55-8089-01 1 36762241 36762241 A G THRAP3 Missense_Mutation p.K725E 0.09 deleterious(0) probably_damaging(0.953) TCGA-55-8089-01 1 39322579 39322579 C A RRAGC Missense_Mutation p.G138V 0.10 deleterious(0) benign(0.415) TCGA-55-8089-01 1 39781294 39781294 G C MACF1 Missense_Mutation p.R1132P 0.19 probably_damaging(0.961) TCGA-55-8089-01 1 39802071 39802071 C T MACF1 Intron 0.20 TCGA-55-8089-01 1 40137692 40137692 G C NT5C1A Missense_Mutation p.R7G 0.27 tolerated_low_confidence(0.21) unknown(0) TCGA-55-8089-01 1 40431155 40431155 C T MFSD2A Missense_Mutation p.P177S 0.06 deleterious(0.02) probably_damaging(1) TCGA-55-8089-01 1 40558076 40558076 C T PPT1 Silent p.L76L 0.07 TCGA-55-8089-01 1 41284227 41284227 G T KCNQ4 Missense_Mutation p.G195C 0.08 deleterious(0) probably_damaging(0.997) TCGA-55-8089-01 1 42898960 42898960 C G ZMYND12 Splice_Site p.X277_splice 0.15 TCGA-55-8089-01 1 45407278 45407278 C A EIF2B3 Silent p.V118V 0.08 TCGA-55-8089-01 1 46073647 46073647 C T NASP Missense_Mutation p.S355L 0.15 tolerated_low_confidence(0.65) benign(0.001) TCGA-55-8089-01 1 46471967 46471967 G A MAST2 Missense_Mutation p.D268N 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-8089-01 1 46531746 46531746 C T PIK3R3 Missense_Mutation p.E201K 0.06 tolerated(0.1) benign(0.018) TCGA-55-8089-01 1 4771990 4771990 C A AJAP1 Silent p.P20P 0.08 TCGA-55-8089-01 1 4772094 4772094 G C AJAP1 Missense_Mutation p.R55P 0.15 deleterious(0) probably_damaging(0.975) TCGA-55-8089-01 1 4834592 4834592 G T AJAP1 3'UTR 0.25 TCGA-55-8089-01 1 52769570 52769570 C T ZFYVE9 Silent p.I1137I 0.09 TCGA-55-8089-01 1 6154459 6154459 G C KCNAB2 Splice_Site p.X216_splice 0.13 TCGA-55-8089-01 1 65098301 65098301 G C CACHD1 Missense_Mutation p.V171L 0.10 tolerated(0.08) benign(0.108) TCGA-55-8089-01 1 6534646 6534646 C A PLEKHG5 Nonsense_Mutation p.E181* 0.13 TCGA-55-8089-01 1 66102603 66102603 A T LEPR Nonsense_Mutation p.K1135* 0.10 TCGA-55-8089-01 1 67266816 67266816 C A INSL5 Missense_Mutation p.G30V 0.27 deleterious(0) probably_damaging(1) TCGA-55-8089-01 1 67288118 67288118 G C WDR78 Missense_Mutation p.L808V 0.14 tolerated(0.05) possibly_damaging(0.893) TCGA-55-8089-01 1 67558821 67558821 G C C1orf141 Missense_Mutation p.T357R 0.14 tolerated(0.66) benign(0.043) TCGA-55-8089-01 1 67816597 67816597 G T IL12RB2 Missense_Mutation p.Q361H 0.13 deleterious(0.04) benign(0.013) TCGA-55-8089-01 1 67890002 67890002 C A SERBP1 Missense_Mutation p.E233D 0.25 tolerated(0.1) benign(0.003) TCGA-55-8089-01 1 70505092 70505092 C A LRRC7 Missense_Mutation p.S1157R 0.10 deleterious(0) possibly_damaging(0.594) TCGA-55-8089-01 1 75038941 75038941 T A C1orf173 Missense_Mutation p.Q818L 0.13 tolerated(0.21) benign(0.004) TCGA-55-8089-01 1 75716897 75716897 G T SLC44A5 Missense_Mutation p.Q115K 0.09 deleterious(0.01) probably_damaging(0.979) TCGA-55-8089-01 1 77515964 77515964 C T ST6GALNAC5 Silent p.L231L 0.14 TCGA-55-8089-01 1 82431854 82431854 G A LPHN2 Silent p.Q693Q 0.20 TCGA-55-8089-01 1 82431855 82431855 A T LPHN2 Missense_Mutation p.N694Y 0.18 tolerated(0.31) possibly_damaging(0.667) TCGA-55-8089-01 1 8418747 8418747 G C RERE Missense_Mutation p.P1283R 0.18 unknown(0) TCGA-55-8089-01 1 84412907 84412907 C G TTLL7 Missense_Mutation p.A136P 0.15 deleterious(0) possibly_damaging(0.776) TCGA-55-8089-01 1 84700917 84700917 G C PRKACB Missense_Mutation p.D376H 0.16 deleterious(0) probably_damaging(0.975) TCGA-55-8089-01 1 85718351 85718351 G T C1orf52 Silent p.R170R 0.09 TCGA-55-8089-01 1 86252053 86252053 C G COL24A1 Missense_Mutation p.G1348A 0.11 deleterious(0) probably_damaging(0.982) TCGA-55-8089-01 1 87040251 87040251 G T CLCA4 Missense_Mutation p.S499I 0.09 tolerated(0.17) possibly_damaging(0.689) TCGA-55-8089-01 1 89847479 89847479 C T GBP6 Silent p.I366I 0.11 TCGA-55-8089-01 1 909737 909737 T A PLEKHN1 Silent p.P565P 0.06 TCGA-55-8089-01 1 91967277 91967277 G C CDC7 Missense_Mutation p.E2Q 0.17 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-55-8089-01 1 92193320 92193320 C G TGFBR3 Missense_Mutation p.E261Q 0.23 tolerated(0.44) benign(0.066) TCGA-55-8089-01 1 94343029 94343029 C T DNTTIP2 Silent p.V154V 0.17 TCGA-55-8089-01 1 94639786 94639786 C A ARHGAP29 Missense_Mutation p.R1142L 0.14 tolerated(0.27) benign(0.023) TCGA-55-8089-01 20 13695816 13695816 T A ESF1 Splice_Site p.X755_splice 0.14 TCGA-55-8089-01 20 18449658 18449658 A G POLR3F Missense_Mutation p.I45V 0.20 tolerated(1) benign(0.001) TCGA-55-8089-01 20 20032965 20032965 C T CRNKL1 Missense_Mutation p.G169R 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-55-8089-01 20 2097995 2097995 A T STK35 Nonsense_Mutation p.R526* 0.16 TCGA-55-8089-01 20 21687188 21687188 C A PAX1 Silent p.P133P 0.18 TCGA-55-8089-01 20 23016274 23016274 T A SSTR4 Missense_Mutation p.C52S 0.16 tolerated(0.16) benign(0.001) TCGA-55-8089-01 20 23432474 23432474 G T CST11 Silent p.P104P 0.08 TCGA-55-8089-01 20 25472068 25472068 C A NINL Missense_Mutation p.Q468H 0.11 deleterious(0.05) benign(0.025) TCGA-55-8089-01 20 2636373 2636373 C G NOP56 Nonsense_Mutation p.S297* 0.14 TCGA-55-8089-01 20 30919195 30919195 A T KIF3B 3'UTR 0.25 TCGA-55-8089-01 20 33337487 33337487 C G NCOA6 Missense_Mutation p.Q837H 0.15 probably_damaging(0.978) TCGA-55-8089-01 20 34832713 34832713 A T AAR2 Silent p.S284S 0.07 TCGA-55-8089-01 20 35060738 35060738 C A DLGAP4 Missense_Mutation p.S206R 0.13 deleterious(0.03) probably_damaging(0.973) TCGA-55-8089-01 20 35632154 35632154 A C RBL1 Missense_Mutation p.L996R 0.15 tolerated(0.05) benign(0.045) TCGA-55-8089-01 20 35731232 35731232 C G MROH8 Missense_Mutation p.R1023T 0.16 tolerated(0.07) benign(0.037) TCGA-55-8089-01 20 36149769 36149769 C T NNAT Silent p.L12L 0.14 TCGA-55-8089-01 20 3652890 3652890 G T ADAM33 Silent p.P496P 0.10 TCGA-55-8089-01 20 3652891 3652891 G C ADAM33 Missense_Mutation p.P496R 0.10 deleterious(0) probably_damaging(1) TCGA-55-8089-01 20 36634758 36634758 C G TTI1 Missense_Mutation p.E782Q 0.11 tolerated(0.11) benign(0.008) TCGA-55-8089-01 20 3674142 3674142 G T SIGLEC1 Missense_Mutation p.P1154T 0.13 deleterious(0.03) possibly_damaging(0.833) TCGA-55-8089-01 20 36770521 36770521 C T TGM2 Missense_Mutation p.E314K 0.17 deleterious(0.01) probably_damaging(0.94) TCGA-55-8089-01 20 43379218 43379218 G A KCNK15 Silent p.L244L 0.20 TCGA-55-8089-01 20 43386742 43386742 C A RIMS4 Missense_Mutation p.G108V 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-8089-01 20 43850944 43850944 T C SEMG2 Missense_Mutation p.V224A 0.14 tolerated(0.59) probably_damaging(0.991) TCGA-55-8089-01 20 44576187 44576187 C G PCIF1 Silent p.V636V 0.12 TCGA-55-8089-01 20 48130784 48130784 A G PTGIS Missense_Mutation p.L335P 0.12 deleterious(0.04) possibly_damaging(0.545) TCGA-55-8089-01 20 50408065 50408065 C A SALL4 Silent p.G319G 0.12 TCGA-55-8089-01 20 51871154 51871154 G T TSHZ2 Missense_Mutation p.G386V 0.12 deleterious(0) probably_damaging(1) TCGA-55-8089-01 20 53260096 53260096 G T DOK5 Nonsense_Mutation p.G279* 0.09 TCGA-55-8089-01 20 56140521 56140521 G T PCK1 Missense_Mutation p.K510N 0.10 deleterious(0) possibly_damaging(0.784) TCGA-55-8089-01 20 57484420 57484420 C T GNAS Missense_Mutation p.R844C 0.13 deleterious(0.01) probably_damaging(1) TCGA-55-8089-01 20 57766943 57766943 T C ZNF831 Missense_Mutation p.L290P 0.12 tolerated(0.06) probably_damaging(0.927) TCGA-55-8089-01 20 58450426 58450426 C A SYCP2 Missense_Mutation p.W1083C 0.19 tolerated(0.16) possibly_damaging(0.794) TCGA-55-8089-01 20 58450427 58450427 C G SYCP2 Missense_Mutation p.W1083S 0.19 tolerated(0.41) benign(0.173) TCGA-55-8089-01 20 58489303 58489303 T A SYCP2 Missense_Mutation p.Y213F 0.22 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 20 60885294 60885294 G A LAMA5 Silent p.I3558I 0.12 TCGA-55-8089-01 20 61834373 61834373 C A YTHDF1 Missense_Mutation p.A307S 0.26 tolerated(0.8) benign(0.002) TCGA-55-8089-01 20 62234398 62234398 G A GMEB2 Missense_Mutation p.P93S 0.11 deleterious(0) probably_damaging(1) TCGA-55-8089-01 20 62275238 62275238 G T STMN3 Missense_Mutation p.F54L 0.22 tolerated(0.06) probably_damaging(0.921) TCGA-55-8089-01 20 62421698 62421698 G A ZBTB46 Missense_Mutation p.S138L 0.16 deleterious(0) benign(0.18) TCGA-55-8089-01 20 8782781 8782781 C T PLCB1 Intron 0.18 TCGA-55-8089-01 20 9457387 9457387 G T PLCB4 Silent p.V1161V 0.15 TCGA-55-8089-01 20 9561329 9561329 G T PAK7 Silent p.L151L 0.13 TCGA-55-8089-01 21 19666592 19666592 C A TMPRSS15 Silent p.V827V 0.19 TCGA-55-8089-01 21 27124435 27124435 G T GABPA Missense_Mutation p.G148V 0.11 tolerated(0.12) possibly_damaging(0.708) TCGA-55-8089-01 21 28304412 28304412 G A ADAMTS5 Missense_Mutation p.P654S 0.24 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 21 30699562 30699562 T A BACH1 Missense_Mutation p.S473T 0.18 tolerated(0.08) benign(0.121) TCGA-55-8089-01 21 35138245 35138245 C T ITSN1 Silent p.L285L 0.33 TCGA-55-8089-01 21 35497766 35497766 G C MRPS6 Missense_Mutation p.Q57H 0.19 tolerated(0.57) possibly_damaging(0.516) TCGA-55-8089-01 21 37518645 37518645 G T CBR3 Silent p.V223V 0.17 TCGA-55-8089-01 21 37833416 37833416 G T CLDN14 Missense_Mutation p.P193H 0.19 tolerated(0.1) benign(0.371) TCGA-55-8089-01 21 41550860 41550860 C T DSCAM Missense_Mutation p.E981K 0.19 deleterious(0.01) benign(0) TCGA-55-8089-01 21 45523482 45523482 C T TRAPPC10 3'UTR 0.14 TCGA-55-8089-01 22 22890743 22890743 G C PRAME Missense_Mutation p.L426V 0.09 deleterious(0.03) probably_damaging(0.935) TCGA-55-8089-01 22 25315856 25315856 C G SGSM1 Missense_Mutation p.S1085C 0.08 deleterious(0) probably_damaging(0.997) TCGA-55-8089-01 22 26164102 26164102 C A MYO18B Missense_Mutation p.S73R 0.05 tolerated_low_confidence(0.06) possibly_damaging(0.603) TCGA-55-8089-01 22 26423002 26423002 C T MYO18B Silent p.L2354L 0.07 TCGA-55-8089-01 22 26736429 26736429 G A SEZ6L Silent p.L681L 0.18 TCGA-55-8089-01 22 30700554 30700554 T A TBC1D10A Missense_Mutation p.N99I 0.19 deleterious(0) possibly_damaging(0.866) TCGA-55-8089-01 22 30866238 30866238 C A SEC14L3 Silent p.R45R 0.21 TCGA-55-8089-01 22 31741081 31741081 C G PATZ1 Missense_Mutation p.A170P 0.18 tolerated_low_confidence(0.42) benign(0.31) TCGA-55-8089-01 22 32828437 32828437 G T BPIFC Missense_Mutation p.L358M 0.17 deleterious(0) probably_damaging(0.991) TCGA-55-8089-01 22 32843309 32843309 A T BPIFC Missense_Mutation p.F88L 0.19 tolerated(0.3) benign(0.186) TCGA-55-8089-01 22 32894161 32894161 G A FBXO7 Missense_Mutation p.E405K 0.04 deleterious(0.01) benign(0.028) TCGA-55-8089-01 22 37326763 37326763 C A CSF2RB Missense_Mutation p.H301Q 0.09 deleterious(0.01) benign(0.057) TCGA-55-8089-01 22 38061659 38061659 G A PDXP Silent p.E224E 0.06 TCGA-55-8089-01 22 39815594 39815594 T C TAB1 Silent p.D245D 0.10 TCGA-55-8089-01 22 40825660 40825660 A T MKL1 Missense_Mutation p.V84E 0.15 deleterious(0) probably_damaging(0.995) TCGA-55-8089-01 22 41973365 41973365 C T CSDC2 3'Flank 0.16 TCGA-55-8089-01 22 42070954 42070954 C T NHP2L1 Missense_Mutation p.E124K 0.16 deleterious(0) benign(0.18) TCGA-55-8089-01 22 43831094 43831094 T A MPPED1 Missense_Mutation p.L122Q 0.11 tolerated(0.1) probably_damaging(0.946) TCGA-55-8089-01 22 46652435 46652435 G T PKDREJ 3'UTR 0.12 TCGA-55-8089-01 22 47107021 47107021 C A CERK Missense_Mutation p.K177N 0.08 deleterious(0) possibly_damaging(0.598) TCGA-55-8089-01 22 50301555 50301555 G T ALG12 Missense_Mutation p.P269H 0.16 probably_damaging(1) TCGA-55-8089-01 22 50315238 50315238 C T CRELD2 Nonsense_Mutation p.Q141* 0.09 TCGA-55-8089-01 22 50356445 50356445 A T PIM3 Missense_Mutation p.D242V 0.05 deleterious(0) probably_damaging(0.99) TCGA-55-8089-01 22 50728108 50728108 C A PLXNB2 Silent p.R302R 0.08 TCGA-55-8089-01 2 100181963 100181963 T A AFF3 Silent p.T1060T 0.05 TCGA-55-8089-01 2 101646017 101646017 C G TBC1D8 Missense_Mutation p.E705Q 0.21 deleterious(0.01) probably_damaging(0.952) TCGA-55-8089-01 2 105858314 105858314 C A GPR45 5'UTR 0.08 TCGA-55-8089-01 2 1093892 1093892 T C SNTG2 Missense_Mutation p.V74A 0.15 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 2 109463283 109463283 G T CCDC138 Missense_Mutation p.Q471H 0.09 deleterious(0) benign(0.013) TCGA-55-8089-01 2 110881529 110881529 C G NPHP1 Missense_Mutation p.E681Q 0.16 deleterious(0) benign(0.401) TCGA-55-8089-01 2 111414648 111414648 C T BUB1 Missense_Mutation p.E555K 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-55-8089-01 2 112940452 112940452 G C FBLN7 Missense_Mutation p.R252P 0.09 deleterious(0) possibly_damaging(0.905) TCGA-55-8089-01 2 1133467 1133467 A C SNTG2 Missense_Mutation p.H128P 0.17 deleterious(0.03) benign(0.143) TCGA-55-8089-01 2 113404718 113404718 G T SLC20A1 Missense_Mutation p.G105C 0.13 deleterious(0) probably_damaging(1) TCGA-55-8089-01 2 118705721 118705721 T A CCDC93 Missense_Mutation p.N395I 0.08 deleterious(0.03) benign(0.089) TCGA-55-8089-01 2 122120858 122120858 C T CLASP1 Missense_Mutation p.A1366T 0.20 deleterious(0) possibly_damaging(0.895) TCGA-55-8089-01 2 1241768 1241768 C G SNTG2 Missense_Mutation p.I276M 0.12 deleterious(0) probably_damaging(0.91) TCGA-55-8089-01 2 128331537 128331537 G T MYO7B Missense_Mutation p.R212L 0.16 deleterious(0) probably_damaging(1) TCGA-55-8089-01 2 130725889 130725889 C G RAB6C-AS1 RNA 0.08 TCGA-55-8089-01 2 131521159 131521159 C T AMER3 Missense_Mutation p.T505I 0.11 deleterious(0) probably_damaging(0.997) TCGA-55-8089-01 2 133540039 133540039 C A NCKAP5 Nonsense_Mutation p.G1449* 0.10 TCGA-55-8089-01 2 135625293 135625294 - A ACMSD Intron 0.10 TCGA-55-8089-01 2 141665549 141665549 G T LRP1B Silent p.P1139P 0.18 TCGA-55-8089-01 2 1491710 1491710 C A TPO Missense_Mutation p.T572N 0.21 tolerated(0.12) benign(0.06) TCGA-55-8089-01 2 149227513 149227513 G C MBD5 Missense_Mutation p.L667F 0.27 tolerated(0.29) possibly_damaging(0.765) TCGA-55-8089-01 2 149247558 149247558 G T MBD5 Missense_Mutation p.G1220C 0.13 deleterious_low_confidence(0.03) unknown(0) TCGA-55-8089-01 2 149818584 149818584 G C KIF5C Missense_Mutation p.L356F 0.14 tolerated(0.09) benign(0.328) TCGA-55-8089-01 2 152537297 152537297 C T NEB Missense_Mutation p.E997K 0.06 possibly_damaging(0.895) TCGA-55-8089-01 2 153575171 153575171 T C ARL6IP6 Silent p.A11A 0.04 TCGA-55-8089-01 2 155555789 155555789 C A KCNJ3 Missense_Mutation p.L168M 0.11 deleterious(0.03) benign(0.33) TCGA-55-8089-01 2 158971768 158971768 C A UPP2 Silent p.I169I 0.11 TCGA-55-8089-01 2 160673334 160673334 C A LY75-CD302 Missense_Mutation p.G1455W 0.10 deleterious(0) probably_damaging(0.998) TCGA-55-8089-01 2 165971981 165971981 T A SCN3A Missense_Mutation p.E1166D 0.11 tolerated(0.35) possibly_damaging(0.737) TCGA-55-8089-01 2 166246170 166246170 G A SCN2A Missense_Mutation p.D1952N 0.23 tolerated(0.41) benign(0.019) TCGA-55-8089-01 2 168106746 168106746 G T XIRP2 Missense_Mutation p.L2948F 0.06 probably_damaging(0.951) TCGA-55-8089-01 2 168107917 168107917 G C XIRP2 Missense_Mutation p.E3339Q 0.10 possibly_damaging(0.843) TCGA-55-8089-01 2 170145620 170145620 G T LRP2 Missense_Mutation p.Q320K 0.13 benign(0.065) TCGA-55-8089-01 2 171818217 171818217 C T GORASP2 Missense_Mutation p.L290F 0.15 tolerated(0.22) possibly_damaging(0.507) TCGA-55-8089-01 2 172683376 172683376 C G SLC25A12 Missense_Mutation p.D288H 0.13 deleterious(0.02) probably_damaging(0.982) TCGA-55-8089-01 2 174130918 174130918 G A MLTK Missense_Mutation p.V615M 0.08 deleterious_low_confidence(0) possibly_damaging(0.854) TCGA-55-8089-01 2 175216419 175216419 C A CIR1 Missense_Mutation p.E173D 0.16 tolerated(0.09) unknown(0) TCGA-55-8089-01 2 175612976 175612976 G A CHRNA1 Missense_Mutation p.A442V 0.13 deleterious(0) benign(0.116) TCGA-55-8089-01 2 176964640 176964640 C A HOXD12 Silent p.A37A 0.08 TCGA-55-8089-01 2 17698701 17698701 C G RAD51AP2 Missense_Mutation p.E328Q 0.27 deleterious(0.01) possibly_damaging(0.564) TCGA-55-8089-01 2 178936853 178936853 A G PDE11A Silent p.G104G 0.13 TCGA-55-8089-01 2 179196308 179196308 A - OSBPL6 Frame_Shift_Del p.K117Sfs*18 0.18 TCGA-55-8089-01 2 179417298 179417298 C T TTN Missense_Mutation p.G30110E 0.14 TCGA-55-8089-01 2 179428279 179428279 A G TTN Missense_Mutation p.L27527P 0.07 TCGA-55-8089-01 2 179434276 179434276 A T TTN Nonsense_Mutation p.L25528* 0.24 TCGA-55-8089-01 2 179458812 179458812 C G TTN Missense_Mutation p.K19436N 0.15 TCGA-55-8089-01 2 179481282 179481282 G T TTN Missense_Mutation p.P16079H 0.12 TCGA-55-8089-01 2 179499330 179499330 G T TTN Missense_Mutation p.L14060M 0.09 TCGA-55-8089-01 2 179499898 179499898 G T TTN Silent p.P14006P 0.18 TCGA-55-8089-01 2 179587246 179587246 C G TTN Missense_Mutation p.R7423T 0.17 TCGA-55-8089-01 2 179599166 179599166 G C TTN Missense_Mutation p.L5129V 0.07 TCGA-55-8089-01 2 179616214 179616214 G C TTN Intron 0.05 TCGA-55-8089-01 2 17962033 17962033 A T GEN1 Silent p.P518P 0.16 TCGA-55-8089-01 2 179631172 179631172 G A TTN Silent p.S3213S 0.13 TCGA-55-8089-01 2 179638426 179638426 C A TTN Missense_Mutation p.D2453Y 0.13 TCGA-55-8089-01 2 182388237 182388237 T G ITGA4 Missense_Mutation p.I716R 0.18 deleterious(0.02) possibly_damaging(0.682) TCGA-55-8089-01 2 189859321 189859321 G A COL3A1 Splice_Site p.X449_splice 0.19 TCGA-55-8089-01 2 189870076 189870076 G T COL3A1 Missense_Mutation p.G978C 0.12 probably_damaging(1) TCGA-55-8089-01 2 189916102 189916102 C T COL5A2 Missense_Mutation p.A959T 0.19 unknown(0) TCGA-55-8089-01 2 191759904 191759904 G C GLS Missense_Mutation p.S138T 0.14 deleterious(0.05) benign(0.151) TCGA-55-8089-01 2 1921081 1921081 T A MYT1L Missense_Mutation p.K503M 0.20 deleterious(0) probably_damaging(0.951) TCGA-55-8089-01 2 202074263 202074263 C G CASP10 Missense_Mutation p.H465D 0.22 deleterious(0.02) benign(0.196) TCGA-55-8089-01 2 206610586 206610586 G A NRP2 Silent p.R586R 0.25 TCGA-55-8089-01 2 210557618 210557618 G A MAP2 Missense_Mutation p.E242K 0.18 deleterious_low_confidence(0) benign(0.184) TCGA-55-8089-01 2 21232045 21232045 T A APOB Silent p.A2565A 0.21 TCGA-55-8089-01 2 219513427 219513427 G A ZNF142 Nonsense_Mutation p.Q402* 0.18 TCGA-55-8089-01 2 220290740 220290740 C A DES 3'UTR 0.15 TCGA-55-8089-01 2 220290741 220290741 G A DES 3'UTR 0.15 TCGA-55-8089-01 2 220342800 220342800 G C SPEG Missense_Mutation p.R1667P 0.14 probably_damaging(0.996) TCGA-55-8089-01 2 220404080 220404080 C A CHPF 3'UTR 0.19 TCGA-55-8089-01 2 220431998 220431998 G A OBSL1 Missense_Mutation p.L612F 0.32 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 2 220480061 220480061 G A STK11IP Missense_Mutation p.E1050K 0.15 deleterious(0) benign(0.199) TCGA-55-8089-01 2 224462128 224462128 G T SCG2 3'UTR 0.14 TCGA-55-8089-01 2 228388581 228388581 G A AGFG1 Silent p.L160L 0.06 TCGA-55-8089-01 2 233321083 233321083 G A ALPI Nonsense_Mutation p.W31* 0.20 TCGA-55-8089-01 2 233759609 233759609 G C NGEF Silent p.V282V 0.14 TCGA-55-8089-01 2 234652533 234652533 C A UGT1A10 Intron 0.15 TCGA-55-8089-01 2 234678226 234678226 G T UGT1A10 Intron 0.09 TCGA-55-8089-01 2 237075028 237075028 C T GBX2 Silent p.P192P 0.14 TCGA-55-8089-01 2 237489698 237489698 G T ACKR3 Missense_Mutation p.R197L 0.13 tolerated(0.53) benign(0.261) TCGA-55-8089-01 2 238475749 238475749 G A PRLH Silent p.K65K 0.15 TCGA-55-8089-01 2 238742946 238742946 G A RBM44 Missense_Mutation p.E1021K 0.20 deleterious(0.03) probably_damaging(0.988) TCGA-55-8089-01 2 239038894 239038894 G C ESPNL Missense_Mutation p.Q513H 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-55-8089-01 2 239040064 239040064 C T ESPNL Silent p.A903A 0.16 TCGA-55-8089-01 2 239180143 239180143 C T PER2 Silent p.A194A 0.19 TCGA-55-8089-01 2 240036854 240036854 C A HDAC4 Missense_Mutation p.Q557H 0.19 tolerated(0.17) benign(0.002) TCGA-55-8089-01 2 241622113 241622113 C T AQP12B Missense_Mutation p.G48R 0.10 deleterious(0.02) possibly_damaging(0.763) TCGA-55-8089-01 2 241682379 241682379 G T KIF1A Missense_Mutation p.H1203N 0.11 tolerated(0.31) benign(0.199) TCGA-55-8089-01 2 242577074 242577074 G C ATG4B 5'UTR 0.16 TCGA-55-8089-01 2 242755756 242755756 C A NEU4 Silent p.P38P 0.16 TCGA-55-8089-01 2 24338380 24338380 A T PFN4 3'UTR 0.36 TCGA-55-8089-01 2 25050872 25050872 G A ADCY3 Silent p.L777L 0.12 TCGA-55-8089-01 2 25387561 25387561 C T POMC Nonsense_Mutation p.W27* 0.23 TCGA-55-8089-01 2 25464507 25464507 G C DNMT3A Missense_Mutation p.S669C 0.14 deleterious(0) probably_damaging(1) TCGA-55-8089-01 2 27352686 27352686 C A ABHD1 Missense_Mutation p.L228M 0.17 tolerated(0.29) benign(0.238) TCGA-55-8089-01 2 27463139 27463139 G C CAD Missense_Mutation p.E1835Q 0.17 tolerated(0.51) benign(0.343) TCGA-55-8089-01 2 27479383 27479383 G T SLC30A3 Missense_Mutation p.P297T 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-55-8089-01 2 27679375 27679375 C T IFT172 Intron 0.19 TCGA-55-8089-01 2 29446217 29446217 G T ALK Missense_Mutation p.T1117N 0.10 deleterious(0.02) benign(0.016) TCGA-55-8089-01 2 33749075 33749075 C A RASGRP3 Missense_Mutation p.Q216K 0.10 tolerated(0.09) benign(0.119) TCGA-55-8089-01 2 38811070 38811070 T C HNRNPLL Splice_Site p.X178_splice 0.24 TCGA-55-8089-01 2 39250368 39250368 T A SOS1 Splice_Site p.X401_splice 0.21 TCGA-55-8089-01 2 40656343 40656343 T A SLC8A1 Missense_Mutation p.S360C 0.15 deleterious(0) probably_damaging(0.992) TCGA-55-8089-01 2 42909654 42909654 A T MTA3 Silent p.S272S 0.15 TCGA-55-8089-01 2 42931360 42931360 C T MTA3 Missense_Mutation p.S351F 0.09 tolerated(0.21) benign(0.031) TCGA-55-8089-01 2 44055161 44055161 G A ABCG5 Missense_Mutation p.R199C 0.07 deleterious(0.03) possibly_damaging(0.751) TCGA-55-8089-01 2 50758398 50758398 C G NRXN1 Missense_Mutation p.D812H 0.10 deleterious(0) probably_damaging(0.991) TCGA-55-8089-01 2 54120079 54120079 C T PSME4 Missense_Mutation p.D1353N 0.12 tolerated(0.18) benign(0.001) TCGA-55-8089-01 2 54161847 54161847 C T PSME4 Silent p.L284L 0.14 TCGA-55-8089-01 2 61438969 61438969 T A USP34 Missense_Mutation p.K2926N 0.12 deleterious(0.01) probably_damaging(0.954) TCGA-55-8089-01 2 62449632 62449632 C T B3GNT2 Silent p.L93L 0.16 TCGA-55-8089-01 2 62450554 62450554 G C B3GNT2 3'UTR 0.14 TCGA-55-8089-01 2 63349184 63349184 C A WDPCP Missense_Mutation p.R733I 0.18 tolerated(0.12) benign(0.001) TCGA-55-8089-01 2 70188863 70188863 C T ASPRV1 5'UTR 0.14 TCGA-55-8089-01 2 70504387 70504387 G C PCYOX1 Missense_Mutation p.E461Q 0.13 deleterious(0) probably_damaging(0.995) TCGA-55-8089-01 2 71192192 71192192 G T ATP6V1B1 Missense_Mutation p.D495Y 0.15 deleterious(0) possibly_damaging(0.742) TCGA-55-8089-01 2 71891551 71891551 C G DYSF Silent p.L1719L 0.15 TCGA-55-8089-01 2 74881608 74881608 C A SEMA4F Silent p.R35R 0.27 TCGA-55-8089-01 2 74901709 74901709 G T SEMA4F Missense_Mutation p.G303C 0.16 deleterious(0) probably_damaging(1) TCGA-55-8089-01 2 74902987 74902987 T C SEMA4F Missense_Mutation p.W532R 0.13 deleterious(0) probably_damaging(1) TCGA-55-8089-01 2 75109285 75109285 C G HK2 Silent p.L586L 0.17 TCGA-55-8089-01 2 77745644 77745644 G T LRRTM4 Missense_Mutation p.P451T 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 2 79384732 79384732 G C REG3A Missense_Mutation p.S142R 0.07 tolerated(0.06) benign(0.001) TCGA-55-8089-01 2 85280404 85280404 G T KCMF1 Missense_Mutation p.D340Y 0.09 deleterious_low_confidence(0) benign(0.172) TCGA-55-8089-01 2 88327916 88327916 T C KRCC1 Missense_Mutation p.Y56C 0.17 tolerated(0.07) benign(0.018) TCGA-55-8089-01 2 89326667 89326667 G T IGKV3-11 3'Flank 0.16 TCGA-55-8089-01 2 97506557 97506557 C G ANKRD23 Missense_Mutation p.L131F 0.14 deleterious(0) probably_damaging(1) TCGA-55-8089-01 2 98351824 98351824 C A ZAP70 Silent p.I398I 0.14 TCGA-55-8089-01 2 99636909 99636909 C A TSGA10 Nonsense_Mutation p.E551* 0.13 TCGA-55-8089-01 3 102183050 102183050 C A ZPLD1 Missense_Mutation p.P255Q 0.17 deleterious(0.05) probably_damaging(0.921) TCGA-55-8089-01 3 107798937 107798937 C A CD47 Missense_Mutation p.D101Y 0.15 deleterious(0.01) benign(0.349) TCGA-55-8089-01 3 108218299 108218299 T G MYH15 Intron 0.08 TCGA-55-8089-01 3 111394116 111394116 G A PLCXD2 Silent p.R8R 0.13 TCGA-55-8089-01 3 111688754 111688754 C A PHLDB2 Missense_Mutation p.A1178E 0.18 deleterious(0) possibly_damaging(0.586) TCGA-55-8089-01 3 113955683 113955683 T G ZNF80 Missense_Mutation p.Q80P 0.18 tolerated(0.07) benign(0.012) TCGA-55-8089-01 3 118942954 118942954 C T B4GALT4 Missense_Mutation p.E209K 0.07 tolerated(0.37) possibly_damaging(0.497) TCGA-55-8089-01 3 121256044 121256044 C A POLQ Missense_Mutation p.V215L 0.07 deleterious(0.01) possibly_damaging(0.759) TCGA-55-8089-01 3 122631064 122631064 C T SEMA5B Missense_Mutation p.G1005R 0.23 deleterious(0) probably_damaging(0.983) TCGA-55-8089-01 3 123003559 123003559 G T ADCY5 Missense_Mutation p.L1228M 0.08 deleterious(0) probably_damaging(1) TCGA-55-8089-01 3 123047508 123047508 C A ADCY5 Missense_Mutation p.E596D 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-55-8089-01 3 125786993 125786993 G A SLC41A3 Missense_Mutation p.H24Y 0.08 tolerated(0.68) benign(0.002) TCGA-55-8089-01 3 127387354 127387354 G T PODXL2 Missense_Mutation p.S426I 0.29 tolerated(0.08) possibly_damaging(0.546) TCGA-55-8089-01 3 128758690 128758690 G A EFCC1 Silent p.%3D 0.07 TCGA-55-8089-01 3 128979530 128979530 A T COPG1 Silent p.S336S 0.20 TCGA-55-8089-01 3 12977436 12977436 C A IQSEC1 Silent p.V374V 0.09 TCGA-55-8089-01 3 130454816 130454816 C T PIK3R4 Missense_Mutation p.G255D 0.18 deleterious(0.03) probably_damaging(1) TCGA-55-8089-01 3 1320127 1320127 G T CNTN6 Missense_Mutation p.S130I 0.13 deleterious(0) probably_damaging(0.965) TCGA-55-8089-01 3 134267921 134267921 C T CEP63 Missense_Mutation p.A362V 0.11 deleterious(0.01) benign(0.149) TCGA-55-8089-01 3 134322799 134322799 C G KY Missense_Mutation p.K536N 0.08 tolerated(0.11) possibly_damaging(0.908) TCGA-55-8089-01 3 134880946 134880946 G A EPHB1 Silent p.V503V 0.20 TCGA-55-8089-01 3 135806731 135806731 C G PPP2R3A Nonsense_Mutation p.S932* 0.17 TCGA-55-8089-01 3 138023824 138023824 G A NME9 Missense_Mutation p.H167Y 0.15 deleterious(0.05) possibly_damaging(0.465) TCGA-55-8089-01 3 138191328 138191328 G A ESYT3 Missense_Mutation p.E622K 0.16 tolerated(0.39) benign(0.103) TCGA-55-8089-01 3 138665258 138665258 G T FOXL2 Missense_Mutation p.R103S 0.10 deleterious(0) probably_damaging(0.988) TCGA-55-8089-01 3 1418756 1418756 G T CNTN6 Missense_Mutation p.W721C 0.04 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 3 142840413 142840413 C G CHST2 Missense_Mutation p.A252G 0.23 tolerated(0.18) possibly_damaging(0.663) TCGA-55-8089-01 3 147128145 147128145 C A ZIC1 Missense_Mutation p.H82Q 0.14 deleterious(0.04) probably_damaging(0.952) TCGA-55-8089-01 3 147128677 147128677 C A ZIC1 Missense_Mutation p.H260N 0.06 deleterious(0) probably_damaging(0.989) TCGA-55-8089-01 3 147131383 147131383 T A ZIC1 3'UTR 0.15 TCGA-55-8089-01 3 150690385 150690385 A T CLRN1 Silent p.T37T 0.10 TCGA-55-8089-01 3 151046740 151046740 C T P2RY13 Missense_Mutation p.R35Q 0.17 tolerated(0.71) benign(0.004) TCGA-55-8089-01 3 167248912 167248912 C G WDR49 Missense_Mutation p.A385P 0.08 deleterious(0.01) possibly_damaging(0.472) TCGA-55-8089-01 3 169642919 169642919 T C SAMD7 Silent p.T95T 0.18 TCGA-55-8089-01 3 179080201 179080201 G T MFN1 Missense_Mutation p.C156F 0.07 deleterious(0.04) possibly_damaging(0.892) TCGA-55-8089-01 3 182733250 182733250 T C MCCC1 Silent p.E718E 0.24 TCGA-55-8089-01 3 184103926 184103926 C G CHRD Silent p.P637P 0.06 TCGA-55-8089-01 3 189028214 189028214 G T TPRG1 Silent p.P173P 0.08 TCGA-55-8089-01 3 191178999 191178999 G T PYDC2 Missense_Mutation p.E16D 0.06 tolerated(0.05) probably_damaging(0.99) TCGA-55-8089-01 3 193042769 193042769 C G ATP13A5 Missense_Mutation p.A520P 0.18 tolerated(0.37) benign(0.012) TCGA-55-8089-01 3 196022936 196022936 C T TCTEX1D2 Missense_Mutation p.A108T 0.23 deleterious(0) possibly_damaging(0.862) TCGA-55-8089-01 3 32031134 32031134 C G ZNF860 Nonsense_Mutation p.S188* 0.11 TCGA-55-8089-01 3 32804338 32804338 C A CNOT10 Nonsense_Mutation p.S668* 0.07 TCGA-55-8089-01 3 32859640 32859640 C G TRIM71 Missense_Mutation p.A23G 0.07 deleterious_low_confidence(0.02) unknown(0) TCGA-55-8089-01 3 37170577 37170577 C A LRRFIP2 Nonsense_Mutation p.E52* 0.10 TCGA-55-8089-01 3 38278382 38278382 G T OXSR1 Missense_Mutation p.G335V 0.14 tolerated(0.2) benign(0.01) TCGA-55-8089-01 3 38347785 38347785 G C SLC22A14 Missense_Mutation p.V90L 0.27 tolerated(0.25) benign(0.041) TCGA-55-8089-01 3 38548421 38548421 C T EXOG Nonsense_Mutation p.Q203* 0.19 TCGA-55-8089-01 3 38565545 38565545 G T EXOG Missense_Mutation p.V267L 0.11 deleterious(0) possibly_damaging(0.831) TCGA-55-8089-01 3 38640472 38640472 C T SCN5A Missense_Mutation p.E654K 0.07 tolerated(0.11) possibly_damaging(0.895) TCGA-55-8089-01 3 38764924 38764924 C T SCN10A Missense_Mutation p.E1117K 0.12 tolerated(0.09) benign(0.173) TCGA-55-8089-01 3 39307520 39307520 C T CX3CR1 Missense_Mutation p.A193T 0.20 deleterious(0.02) possibly_damaging(0.801) TCGA-55-8089-01 3 40351321 40351321 G T EIF1B 5'UTR 0.38 TCGA-55-8089-01 3 40529088 40529088 C G ZNF619 Missense_Mutation p.Q403E 0.19 deleterious(0) possibly_damaging(0.756) TCGA-55-8089-01 3 42788855 42788855 G A CCDC13 Missense_Mutation p.P205L 0.19 deleterious(0.01) possibly_damaging(0.449) TCGA-55-8089-01 3 42906235 42906235 G T ACKR2 Missense_Mutation p.V81F 0.17 deleterious(0) benign(0.206) TCGA-55-8089-01 3 42916727 42916727 C A CYP8B1 Missense_Mutation p.Q194H 0.11 deleterious(0.04) possibly_damaging(0.845) TCGA-55-8089-01 3 42950326 42950326 G C ZNF662 Missense_Mutation p.E86Q 0.10 deleterious(0) probably_damaging(0.997) TCGA-55-8089-01 3 46245070 46245070 C T CCR1 Missense_Mutation p.M245I 0.23 deleterious(0.04) possibly_damaging(0.582) TCGA-55-8089-01 3 47037012 47037012 A C NBEAL2 Missense_Mutation p.Q596P 0.08 deleterious(0.05) probably_damaging(1) TCGA-55-8089-01 3 47677588 47677588 A T SMARCC1 Missense_Mutation p.D805E 0.16 tolerated(1) benign(0.001) TCGA-55-8089-01 3 47677590 47677590 C A SMARCC1 Missense_Mutation p.D805Y 0.15 deleterious(0.01) benign(0.257) TCGA-55-8089-01 3 48336270 48336270 C G NME6 Missense_Mutation p.E148Q 0.13 deleterious(0) probably_damaging(0.995) TCGA-55-8089-01 3 48436154 48436154 C T FBXW12 3'UTR 0.20 TCGA-55-8089-01 3 48623528 48623528 A T COL7A1 Nonsense_Mutation p.C1234* 0.19 TCGA-55-8089-01 3 48664411 48664411 T G SLC26A6 Silent p.T657T 0.24 TCGA-55-8089-01 3 49142171 49142171 G C QARS 5'UTR 0.15 TCGA-55-8089-01 3 49700666 49700666 C A BSN Missense_Mutation p.P3692Q 0.11 unknown(0) TCGA-55-8089-01 3 52014483 52014483 C T ABHD14A Missense_Mutation p.R158W 0.09 deleterious(0.05) benign(0.016) TCGA-55-8089-01 3 52860612 52860612 G A ITIH4 Missense_Mutation p.T192I 0.06 deleterious(0) probably_damaging(0.938) TCGA-55-8089-01 3 52874369 52874369 C A TMEM110 3'UTR 0.50 TCGA-55-8089-01 3 53908366 53908366 C G ACTR8 Missense_Mutation p.D313H 0.06 deleterious(0) probably_damaging(0.947) TCGA-55-8089-01 3 57310740 57310740 T A ASB14 Silent p.L534L 0.13 TCGA-55-8089-01 3 57994582 57994582 C A FLNB Silent p.I97I 0.09 TCGA-55-8089-01 3 58620045 58620045 C A FAM3D Silent p.L212L 0.10 TCGA-55-8089-01 3 63645403 63645403 C A SNTN Missense_Mutation p.L50M 0.07 deleterious(0) probably_damaging(1) TCGA-55-8089-01 3 63973891 63973891 C T ATXN7 Missense_Mutation p.P418S 0.14 tolerated(0.15) probably_damaging(0.98) TCGA-55-8089-01 3 63981726 63981726 G C ATXN7 Missense_Mutation p.G743A 0.13 tolerated(0.09) benign(0.249) TCGA-55-8089-01 3 64085066 64085066 G C PRICKLE2 Missense_Mutation p.F732L 0.12 tolerated(0.65) benign(0) TCGA-55-8089-01 3 64133064 64133064 C A PRICKLE2 Missense_Mutation p.D368Y 0.09 deleterious(0) possibly_damaging(0.722) TCGA-55-8089-01 3 74420476 74420476 C T CNTN3 Missense_Mutation p.E177K 0.19 tolerated(0.13) probably_damaging(0.996) TCGA-55-8089-01 3 98311891 98311891 T A CPOX Missense_Mutation p.E153V 0.16 deleterious(0) probably_damaging(1) TCGA-55-8089-01 4 114274506 114274506 G T ANK2 Missense_Mutation p.V1578L 0.19 benign(0.001) TCGA-55-8089-01 4 114279122 114279122 C T ANK2 Silent p.A3116A 0.12 TCGA-55-8089-01 4 123141573 123141573 T C KIAA1109 Missense_Mutation p.M854T 0.16 benign(0.248) TCGA-55-8089-01 4 123329186 123329186 G T ADAD1 Missense_Mutation p.R283M 0.18 deleterious(0) probably_damaging(1) TCGA-55-8089-01 4 125631304 125631304 C A ANKRD50 Missense_Mutation p.L121F 0.12 tolerated(0.06) benign(0.372) TCGA-55-8089-01 4 126336866 126336866 C G FAT4 Missense_Mutation p.L2250V 0.13 benign(0.213) TCGA-55-8089-01 4 126370376 126370376 A G FAT4 Silent p.K2735K 0.13 TCGA-55-8089-01 4 126373856 126373856 G T FAT4 Missense_Mutation p.R3895S 0.15 benign(0.167) TCGA-55-8089-01 4 134071464 134071464 C T PCDH10 Missense_Mutation p.P57S 0.11 tolerated(1) benign(0.02) TCGA-55-8089-01 4 1343562 1343562 G T UVSSA Missense_Mutation p.V117L 0.20 deleterious(0) possibly_damaging(0.81) TCGA-55-8089-01 4 140375377 140375377 G T RAB33B Nonsense_Mutation p.E10* 0.12 TCGA-55-8089-01 4 140641195 140641195 G T MAML3 Missense_Mutation p.P900Q 0.15 probably_damaging(0.951) TCGA-55-8089-01 4 15067887 15067887 G T CPEB2 Missense_Mutation p.Q996H 0.18 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-55-8089-01 4 151504131 151504131 C A MAB21L2 5'UTR 0.19 TCGA-55-8089-01 4 152043355 152043355 C G SH3D19 Missense_Mutation p.G754A 0.11 deleterious(0) probably_damaging(1) TCGA-55-8089-01 4 153332652 153332652 C T FBXW7 Missense_Mutation p.E102K 0.12 deleterious_low_confidence(0.01) unknown(0) TCGA-55-8089-01 4 155256213 155256213 G T DCHS2 Silent p.T341T 0.15 TCGA-55-8089-01 4 156634496 156634496 G T GUCY1A3 Nonsense_Mutation p.E445* 0.09 TCGA-55-8089-01 4 158256827 158256827 C G GRIA2 Missense_Mutation p.S424C 0.23 tolerated(0.07) benign(0.018) TCGA-55-8089-01 4 158257885 158257885 C G GRIA2 Missense_Mutation p.C610W 0.14 deleterious(0) probably_damaging(0.982) TCGA-55-8089-01 4 158257886 158257886 G A GRIA2 Missense_Mutation p.D611N 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-55-8089-01 4 162459327 162459327 T C FSTL5 Missense_Mutation p.R435G 0.13 deleterious(0) probably_damaging(0.942) TCGA-55-8089-01 4 166414410 166414410 G T CPE Missense_Mutation p.D401Y 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-55-8089-01 4 166964483 166964483 C G TLL1 Missense_Mutation p.P479R 0.16 deleterious(0) probably_damaging(1) TCGA-55-8089-01 4 169362625 169362625 C A DDX60L Missense_Mutation p.G386V 0.14 deleterious(0) probably_damaging(0.992) TCGA-55-8089-01 4 169633019 169633019 G T PALLD Missense_Mutation p.A637S 0.12 tolerated(0.21) benign(0.008) TCGA-55-8089-01 4 169846220 169846220 G C PALLD Missense_Mutation p.D1117H 0.15 deleterious(0) probably_damaging(1) TCGA-55-8089-01 4 173232856 173232856 C A GALNTL6 Missense_Mutation p.S113R 0.13 deleterious(0) probably_damaging(1) TCGA-55-8089-01 4 177049931 177049931 C T WDR17 Missense_Mutation p.T302I 0.15 tolerated(0.07) benign(0.342) TCGA-55-8089-01 4 17805617 17805617 C G DCAF16 Missense_Mutation p.E50Q 0.21 tolerated_low_confidence(0.05) benign(0.039) TCGA-55-8089-01 4 183651438 183651438 G T TENM3 Nonsense_Mutation p.E891* 0.14 TCGA-55-8089-01 4 1850930 1850930 G A LETM1 Missense_Mutation p.P30L 0.22 tolerated_low_confidence(0.73) benign(0) TCGA-55-8089-01 4 186111613 186111613 C A KIAA1430 Missense_Mutation p.E246D 0.19 deleterious(0.01) possibly_damaging(0.601) TCGA-55-8089-01 4 186446247 186446247 C T PDLIM3 Missense_Mutation p.E58K 0.16 tolerated(0.06) probably_damaging(0.997) TCGA-55-8089-01 4 187540391 187540391 G A FAT1 Missense_Mutation p.S2450L 0.13 possibly_damaging(0.7) TCGA-55-8089-01 4 188923907 188923907 G T ZFP42 5'UTR 0.13 TCGA-55-8089-01 4 190876238 190876238 G A FRG1 Missense_Mutation p.D122N 0.06 tolerated(0.26) benign(0.046) TCGA-55-8089-01 4 20259529 20259529 G C SLIT2 Missense_Mutation p.G97A 0.16 deleterious(0) possibly_damaging(0.688) TCGA-55-8089-01 4 23830147 23830147 G C PPARGC1A Silent p.L211L 0.16 TCGA-55-8089-01 4 25014056 25014056 C T LGI2 Missense_Mutation p.D241N 0.17 deleterious(0.01) possibly_damaging(0.757) TCGA-55-8089-01 4 26430433 26430433 C T RBPJ Missense_Mutation p.T293I 0.09 deleterious(0.01) probably_damaging(0.949) TCGA-55-8089-01 4 27019591 27019591 C T STIM2 Missense_Mutation p.S591F 0.15 deleterious_low_confidence(0.01) benign(0.372) TCGA-55-8089-01 4 3419117 3419117 A T RGS12 Missense_Mutation p.L870F 0.19 tolerated(0.19) possibly_damaging(0.779) TCGA-55-8089-01 4 38775383 38775383 A C TLR10 Missense_Mutation p.L610R 0.15 deleterious(0.01) probably_damaging(0.927) TCGA-55-8089-01 4 40244997 40244997 G T RHOH 5'UTR 0.21 TCGA-55-8089-01 4 420315 420315 G C ABCA11P RNA 0.18 TCGA-55-8089-01 4 42145824 42145824 G T BEND4 Silent p.T225T 0.16 TCGA-55-8089-01 4 42590276 42590276 C G ATP8A1 Splice_Site p.X198_splice 0.14 TCGA-55-8089-01 4 42964933 42964933 G T GRXCR1 Missense_Mutation p.D137Y 0.10 deleterious(0) possibly_damaging(0.643) TCGA-55-8089-01 4 47428008 47428008 C A GABRB1 Silent p.V466V 0.10 TCGA-55-8089-01 4 47570898 47570898 G T ATP10D Missense_Mutation p.Q966H 0.06 deleterious(0) probably_damaging(0.933) TCGA-55-8089-01 4 48140730 48140730 C A TEC Missense_Mutation p.K588N 0.16 deleterious(0.01) possibly_damaging(0.464) TCGA-55-8089-01 4 499567 499567 G T PIGG Missense_Mutation p.A141S 0.14 deleterious(0.05) benign(0.371) TCGA-55-8089-01 4 57164495 57164495 G T KIAA1211 Missense_Mutation p.G34C 0.21 deleterious(0) probably_damaging(1) TCGA-55-8089-01 4 57349352 57349352 G T SRP72 Silent p.A291A 0.08 TCGA-55-8089-01 4 5844827 5844827 G T CRMP1 Missense_Mutation p.P342H 0.16 deleterious(0.01) probably_damaging(1) TCGA-55-8089-01 4 5862878 5862878 C A CRMP1 Missense_Mutation p.R177L 0.12 tolerated(0.25) benign(0.002) TCGA-55-8089-01 4 6107226 6107226 C T JAKMIP1 Missense_Mutation p.E200K 0.16 deleterious(0.01) possibly_damaging(0.786) TCGA-55-8089-01 4 62758492 62758492 G C LPHN3 Silent p.R465R 0.16 TCGA-55-8089-01 4 6292982 6292982 G T WFS1 Missense_Mutation p.E173D 0.14 deleterious(0.02) possibly_damaging(0.555) TCGA-55-8089-01 4 66231661 66231661 A T EPHA5 Missense_Mutation p.V680D 0.17 deleterious(0) possibly_damaging(0.781) TCGA-55-8089-01 4 675782 675782 G C MYL5 Nonstop_Mutation p.*174Sext*? 0.22 TCGA-55-8089-01 4 68784929 68784929 C A TMPRSS11A Missense_Mutation p.W241C 0.14 deleterious(0) probably_damaging(1) TCGA-55-8089-01 4 69179974 69179974 C A YTHDC1 Missense_Mutation p.S676I 0.15 deleterious_low_confidence(0.02) unknown(0) TCGA-55-8089-01 4 69433611 69433611 C T UGT2B17 Missense_Mutation p.V198I 0.12 tolerated(1) benign(0.009) TCGA-55-8089-01 4 7043399 7043399 C T CCDC96 Missense_Mutation p.E423K 0.15 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 4 70504987 70504987 T C UGT2A2 Silent p.L124L 0.09 TCGA-55-8089-01 4 71347310 71347310 C A MUC7 Silent p.A283A 0.13 TCGA-55-8089-01 4 71459091 71459091 G T AMBN Silent p.L21L 0.23 TCGA-55-8089-01 4 73013163 73013163 C A NPFFR2 Nonsense_Mutation p.Y401* 0.20 TCGA-55-8089-01 4 73962971 73962971 A C ANKRD17 Missense_Mutation p.S1680R 0.17 benign(0.01) TCGA-55-8089-01 4 7435917 7435917 C T PSAPL1 Silent p.Q230Q 0.17 TCGA-55-8089-01 4 758795 758795 G C PCGF3 Missense_Mutation p.E208D 0.13 deleterious(0.04) possibly_damaging(0.853) TCGA-55-8089-01 4 76551107 76551107 C T CDKL2 Silent p.R22R 0.23 TCGA-55-8089-01 4 79432513 79432513 C T FRAS1 Missense_Mutation p.P3289L 0.11 probably_damaging(0.928) TCGA-55-8089-01 4 79437027 79437027 G A FRAS1 Missense_Mutation p.D3417N 0.09 benign(0.165) TCGA-55-8089-01 4 83839597 83839597 C G THAP9 Silent p.L744L 0.12 TCGA-55-8089-01 4 83978104 83978104 G A COPS4 Missense_Mutation p.E146K 0.10 tolerated(0.34) benign(0.012) TCGA-55-8089-01 4 85419163 85419163 C A NKX6-1 Missense_Mutation p.K73N 0.19 tolerated(0.28) benign(0.403) TCGA-55-8089-01 4 8602988 8602988 A C CPZ Missense_Mutation p.Q87P 0.10 tolerated(0.24) benign(0.317) TCGA-55-8089-01 4 88036412 88036412 G C AFF1 Missense_Mutation p.R809S 0.13 deleterious(0.04) unknown(0) TCGA-55-8089-01 4 88731857 88731857 G A IBSP Missense_Mutation p.E116K 0.17 tolerated(0.08) possibly_damaging(0.52) TCGA-55-8089-01 4 88732779 88732779 C A IBSP Missense_Mutation p.T224N 0.12 tolerated(0.5) benign(0.058) TCGA-55-8089-01 4 91549370 91549370 G T CCSER1 Missense_Mutation p.R640I 0.09 deleterious(0) probably_damaging(0.997) TCGA-55-8089-01 4 93225877 93225877 G A GRID2 Missense_Mutation p.D24N 0.17 tolerated(0.19) probably_damaging(0.987) TCGA-55-8089-01 4 94547572 94547572 T C GRID2 Silent p.D782D 0.17 TCGA-55-8089-01 4 9557899 9557899 T A MIR548I2 RNA 0.17 TCGA-55-8089-01 4 96762054 96762054 G T PDHA2 Missense_Mutation p.K251N 0.14 tolerated(0.13) benign(0.139) TCGA-55-8089-01 4 98633899 98633899 T A STPG2 Missense_Mutation p.K424M 0.23 deleterious(0) probably_damaging(0.935) TCGA-55-8089-01 5 106723417 106723417 C A EFNA5 Silent p.V158V 0.07 TCGA-55-8089-01 5 110819923 110819923 T A CAMK4 Missense_Mutation p.L394Q 0.10 deleterious_low_confidence(0.03) benign(0.022) TCGA-55-8089-01 5 112418701 112418701 G C MCC Missense_Mutation p.S547C 0.10 tolerated(0.19) probably_damaging(0.994) TCGA-55-8089-01 5 113831927 113831927 C A KCNN2 3'UTR 0.14 TCGA-55-8089-01 5 115361776 115361776 A T AQPEP Silent p.L978L 0.09 TCGA-55-8089-01 5 127512819 127512819 T A SLC12A2 Silent p.T984T 0.15 TCGA-55-8089-01 5 132149881 132149881 G C SOWAHA Missense_Mutation p.E190Q 0.10 tolerated(0.2) benign(0.007) TCGA-55-8089-01 5 133494285 133494285 G C SKP1 Missense_Mutation p.A106G 0.09 deleterious(0) possibly_damaging(0.84) TCGA-55-8089-01 5 140059418 140059418 C G HARS Silent p.L117L 0.04 TCGA-55-8089-01 5 140166839 140166839 G T PCDHA1 Missense_Mutation p.A322S 0.15 deleterious_low_confidence(0) possibly_damaging(0.825) TCGA-55-8089-01 5 140176161 140176161 C A PCDHA2 Silent p.R538R 0.15 TCGA-55-8089-01 5 140431966 140431966 G C PCDHB1 Missense_Mutation p.R304T 0.14 tolerated(0.47) possibly_damaging(0.745) TCGA-55-8089-01 5 140475725 140475725 C A PCDHB2 Missense_Mutation p.P451T 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-8089-01 5 140480950 140480950 A T PCDHB3 Silent p.A239A 0.15 TCGA-55-8089-01 5 140503771 140503771 T C PCDHB4 Missense_Mutation p.F731L 0.14 deleterious_low_confidence(0.02) benign(0.109) TCGA-55-8089-01 5 140537288 140537288 C A PCDHB17 Missense_Mutation p.P571Q 0.17 tolerated_low_confidence(0.11) benign(0.003) TCGA-55-8089-01 5 140554543 140554543 G T PCDHB7 Silent p.V709V 0.04 TCGA-55-8089-01 5 140559674 140559674 C A PCDHB8 Missense_Mutation p.L687I 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.619) TCGA-55-8089-01 5 140563601 140563601 G T PCDHB16 Silent p.S489S 0.07 TCGA-55-8089-01 5 140711133 140711133 A G PCDHGA1 Silent p.L294L 0.19 TCGA-55-8089-01 5 140730685 140730685 C A PCDHGB1 Missense_Mutation p.S286R 0.05 tolerated(0.34) benign(0.315) TCGA-55-8089-01 5 140740465 140740465 G T PCDHGB2 Missense_Mutation p.V255L 0.05 tolerated(0.62) benign(0.05) TCGA-55-8089-01 5 141358338 141358338 G T RNF14 Missense_Mutation p.Q259H 0.09 deleterious(0.03) benign(0.109) TCGA-55-8089-01 5 143853605 143853605 C G KCTD16 Missense_Mutation p.I405M 0.20 deleterious(0) probably_damaging(0.994) TCGA-55-8089-01 5 145239439 145239439 C A GRXCR2 Missense_Mutation p.G202W 0.17 deleterious(0) probably_damaging(1) TCGA-55-8089-01 5 147793763 147793763 C G FBXO38 Missense_Mutation p.I386M 0.15 tolerated(0.17) benign(0.04) TCGA-55-8089-01 5 147830798 147830798 C A HTR4 Nonsense_Mutation p.E372* 0.07 TCGA-55-8089-01 5 148586668 148586668 C A ABLIM3 Missense_Mutation p.S182R 0.17 deleterious(0.04) possibly_damaging(0.456) TCGA-55-8089-01 5 148632393 148632393 G T ABLIM3 Missense_Mutation p.R644L 0.07 deleterious(0) possibly_damaging(0.483) TCGA-55-8089-01 5 150444522 150444522 T C TNIP1 Silent p.L45L 0.09 TCGA-55-8089-01 5 150947339 150947339 C G FAT2 Missense_Mutation p.R385T 0.12 benign(0.001) TCGA-55-8089-01 5 153190725 153190725 G C GRIA1 Missense_Mutation p.M897I 0.11 tolerated_low_confidence(0.15) benign(0.027) TCGA-55-8089-01 5 156929912 156929912 A T ADAM19 Missense_Mutation p.C403S 0.14 deleterious(0) possibly_damaging(0.89) TCGA-55-8089-01 5 160042864 160042864 C G ATP10B Missense_Mutation p.E878D 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 5 160061536 160061536 A T ATP10B Silent p.L402L 0.11 TCGA-55-8089-01 5 161112991 161112991 G T GABRA6 5'UTR 0.06 TCGA-55-8089-01 5 161300184 161300184 G T GABRA1 Missense_Mutation p.G106V 0.15 deleterious(0) probably_damaging(0.929) TCGA-55-8089-01 5 16754953 16754953 T A MYO10 Missense_Mutation p.K638M 0.15 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 5 167626963 167626963 C A TENM2 Missense_Mutation p.T1086N 0.14 tolerated(0.05) benign(0.082) TCGA-55-8089-01 5 169533078 169533078 G A FOXI1 Silent p.Q39Q 0.08 TCGA-55-8089-01 5 169780911 169780911 G A KCNIP1 Missense_Mutation p.G11R 0.14 tolerated_low_confidence(0.59) benign(0.193) TCGA-55-8089-01 5 169805827 169805827 C T KCNMB1 Missense_Mutation p.G153R 0.14 tolerated(0.05) probably_damaging(0.948) TCGA-55-8089-01 5 170236648 170236648 C G GABRP Missense_Mutation p.I303M 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 5 170736389 170736389 C A TLX3 Missense_Mutation p.A7E 0.12 tolerated(0.11) benign(0.025) TCGA-55-8089-01 5 171765398 171765398 G T SH3PXD2B Missense_Mutation p.S904Y 0.13 deleterious(0) probably_damaging(1) TCGA-55-8089-01 5 176637951 176637951 G C NSD1 Missense_Mutation p.D851H 0.09 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-55-8089-01 5 178358827 178358827 G T ZFP2 Missense_Mutation p.M171I 0.09 tolerated(0.1) possibly_damaging(0.449) TCGA-55-8089-01 5 178359281 178359281 G T ZFP2 Missense_Mutation p.V323L 0.11 deleterious(0.01) benign(0.301) TCGA-55-8089-01 5 178391989 178391989 A C ZNF454 Missense_Mutation p.K195T 0.08 tolerated(0.17) benign(0.044) TCGA-55-8089-01 5 178554960 178554960 C T ADAMTS2 Missense_Mutation p.G873R 0.15 deleterious(0) probably_damaging(1) TCGA-55-8089-01 5 179045244 179045244 C G HNRNPH1 Missense_Mutation p.R206P 0.14 deleterious(0.01) benign(0.134) TCGA-55-8089-01 5 180670768 180670768 G T GNB2L1 Silent p.L11L 0.12 TCGA-55-8089-01 5 21802308 21802308 A G CDH12 Silent p.A408A 0.14 TCGA-55-8089-01 5 26881576 26881576 G C CDH9 Missense_Mutation p.P680R 0.15 tolerated(0.14) probably_damaging(0.999) TCGA-55-8089-01 5 31318112 31318113 - C CDH6 Intron 0.17 TCGA-55-8089-01 5 3599702 3599702 C G IRX1 Missense_Mutation p.P214A 0.14 tolerated(0.49) benign(0.032) TCGA-55-8089-01 5 36183978 36183978 C T SKP2 3'UTR 0.21 TCGA-55-8089-01 5 41934064 41934064 C G FBXO4 Silent p.V221V 0.12 TCGA-55-8089-01 5 45262601 45262601 A C HCN1 Missense_Mutation p.Y699D 0.14 tolerated_low_confidence(0.15) benign(0.363) TCGA-55-8089-01 5 488505 488505 C G SLC9A3 Missense_Mutation p.E201Q 0.10 deleterious(0.02) possibly_damaging(0.856) TCGA-55-8089-01 5 5239332 5239332 T C ADAMTS16 Silent p.N741N 0.12 TCGA-55-8089-01 5 60240840 60240840 T A ERCC8 5'UTR 0.17 TCGA-55-8089-01 5 60982840 60982840 C A C5orf64 Silent p.T56T 0.17 TCGA-55-8089-01 5 64907502 64907502 C G TRIM23 Missense_Mutation p.L191F 0.19 tolerated(0.07) probably_damaging(0.997) TCGA-55-8089-01 5 65016636 65016636 T C SGTB 5'UTR 0.18 TCGA-55-8089-01 5 65349775 65349775 G A ERBB2IP Missense_Mutation p.E877K 0.10 deleterious(0) benign(0.201) TCGA-55-8089-01 5 68660875 68660875 C A TAF9 Missense_Mutation p.M230I 0.11 tolerated(0.26) benign(0.133) TCGA-55-8089-01 5 68728887 68728887 G A MARVELD2 Missense_Mutation p.M490I 0.15 tolerated(0.1) benign(0.122) TCGA-55-8089-01 5 70785288 70785288 G C BDP1 Missense_Mutation p.R424T 0.15 tolerated(0.1) benign(0.009) TCGA-55-8089-01 5 70944921 70944921 C T MCCC2 Intron 0.25 TCGA-55-8089-01 5 71757118 71757118 C A ZNF366 Missense_Mutation p.G69V 0.09 tolerated_low_confidence(0.06) possibly_damaging(0.834) TCGA-55-8089-01 5 71757326 71757326 T A ZNF366 5'UTR 0.06 TCGA-55-8089-01 5 75978968 75978968 C - IQGAP2 Frame_Shift_Del p.P1231Lfs*7 0.14 TCGA-55-8089-01 5 76645274 76645274 G T PDE8B Missense_Mutation p.G303C 0.07 deleterious(0) probably_damaging(1) TCGA-55-8089-01 5 81614056 81614056 G A ATP6AP1L Silent p.L204L 0.07 TCGA-55-8089-01 5 82834269 82834269 G T VCAN Missense_Mutation p.G1816V 0.23 tolerated(0.33) benign(0.045) TCGA-55-8089-01 5 86697577 86697577 C G CCNH Missense_Mutation p.E234D 0.44 tolerated(0.55) benign(0.004) TCGA-55-8089-01 5 884136 884136 C T BRD9 Missense_Mutation p.A295T 0.06 tolerated(0.1) possibly_damaging(0.743) TCGA-55-8089-01 5 90001260 90001260 T A GPR98 Nonsense_Mutation p.Y2810* 0.09 TCGA-55-8089-01 5 90368328 90368328 G T GPR98 Missense_Mutation p.V6073L 0.17 possibly_damaging(0.841) TCGA-55-8089-01 5 9044654 9044654 G C SEMA5A Missense_Mutation p.S979C 0.14 tolerated(0.14) benign(0.023) TCGA-55-8089-01 5 9066622 9066622 A T SEMA5A Missense_Mutation p.L737Q 0.09 deleterious(0.02) probably_damaging(0.935) TCGA-55-8089-01 5 9190544 9190544 C A SEMA5A Nonsense_Mutation p.E370* 0.15 TCGA-55-8089-01 5 9237949 9237949 G T SEMA5A Silent p.G108G 0.16 TCGA-55-8089-01 5 98224879 98224879 A C CHD1 Missense_Mutation p.F748L 0.18 deleterious(0.02) possibly_damaging(0.533) TCGA-55-8089-01 6 100055054 100055054 G - PRDM13 Frame_Shift_Del 0.19 TCGA-55-8089-01 6 10411817 10411817 T A TFAP2A Intron 0.06 TCGA-55-8089-01 6 117715480 117715480 C G ROS1 Missense_Mutation p.V337L 0.18 tolerated(0.27) benign(0.215) TCGA-55-8089-01 6 117859994 117859994 A G DCBLD1 Missense_Mutation p.I324M 0.17 deleterious(0) possibly_damaging(0.506) TCGA-55-8089-01 6 119670138 119670138 C A MAN1A1 Silent p.S31S 0.22 TCGA-55-8089-01 6 129468188 129468188 A T LAMA2 Missense_Mutation p.T302S 0.11 tolerated(0.14) possibly_damaging(0.458) TCGA-55-8089-01 6 13160490 13160490 G T PHACTR1 Missense_Mutation p.G157V 0.07 deleterious(0) benign(0) TCGA-55-8089-01 6 132061429 132061429 A G ENPP3 Missense_Mutation p.N789S 0.23 deleterious(0.04) possibly_damaging(0.734) TCGA-55-8089-01 6 132910347 132910347 C G TAAR5 Missense_Mutation p.G160A 0.14 tolerated(0.72) benign(0.128) TCGA-55-8089-01 6 142711479 142711479 G A GPR126 Nonsense_Mutation p.W436* 0.19 TCGA-55-8089-01 6 150387253 150387253 C A ULBP3 Missense_Mutation p.R45I 0.21 deleterious(0) probably_damaging(0.94) TCGA-55-8089-01 6 157510821 157510821 G C ARID1B Missense_Mutation p.G1199A 0.13 probably_damaging(0.998) TCGA-55-8089-01 6 157713958 157713958 C A TMEM242 Missense_Mutation p.W134L 0.15 deleterious(0.02) possibly_damaging(0.896) TCGA-55-8089-01 6 158924444 158924444 G A TULP4 Missense_Mutation p.C1250Y 0.21 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-55-8089-01 6 161021988 161021988 C A LPA Missense_Mutation p.V1030F 0.21 tolerated_low_confidence(0.21) probably_damaging(0.93) TCGA-55-8089-01 6 161132202 161132202 C T PLG Missense_Mutation p.S129F 0.10 deleterious(0.01) benign(0.285) TCGA-55-8089-01 6 161162383 161162383 C G PLG Missense_Mutation p.P687A 0.10 deleterious(0) probably_damaging(1) TCGA-55-8089-01 6 169648972 169648972 G T THBS2 Missense_Mutation p.P50H 0.26 tolerated(0.12) possibly_damaging(0.664) TCGA-55-8089-01 6 25776929 25776929 C A SLC17A4 Missense_Mutation p.T365N 0.09 deleterious(0.03) benign(0.093) TCGA-55-8089-01 6 26033503 26033503 C T HIST1H2AB Silent p.L98L 0.14 TCGA-55-8089-01 6 26250668 26250668 G C HIST1H3F Missense_Mutation p.Q56E 0.07 deleterious_low_confidence(0) benign(0.02) TCGA-55-8089-01 6 27100275 27100275 G A HIST1H2BJ Silent p.N85N 0.06 TCGA-55-8089-01 6 28543325 28543325 G T SCAND3 Missense_Mutation p.P386H 0.13 deleterious_low_confidence(0.04) probably_damaging(0.997) TCGA-55-8089-01 6 30955257 30955257 C A MUC21 Silent p.A435A 0.05 TCGA-55-8089-01 6 32138260 32138260 C A AGPAT1 Missense_Mutation p.R151L 0.20 deleterious(0) possibly_damaging(0.726) TCGA-55-8089-01 6 32138728 32138728 G A AGPAT1 Missense_Mutation p.S107F 0.04 tolerated(0.05) benign(0.098) TCGA-55-8089-01 6 32139095 32139095 C A AGPAT1 Missense_Mutation p.G60V 0.20 deleterious(0) probably_damaging(0.923) TCGA-55-8089-01 6 32169088 32169088 C G NOTCH4 Silent p.L1315L 0.14 TCGA-55-8089-01 6 33237305 33237305 G C VPS52 Missense_Mutation p.L112V 0.07 deleterious(0) probably_damaging(1) TCGA-55-8089-01 6 3324113 3324113 T A SLC22A23 Missense_Mutation p.Q346L 0.11 deleterious(0) probably_damaging(0.988) TCGA-55-8089-01 6 35048790 35048790 A G ANKS1A Missense_Mutation p.Q855R 0.06 deleterious(0.04) benign(0.025) TCGA-55-8089-01 6 35773729 35773729 C G LHFPL5 Missense_Mutation p.F94L 0.19 deleterious(0.01) probably_damaging(0.994) TCGA-55-8089-01 6 36041825 36041825 G T MAPK14 Splice_Site p.X150_splice 0.16 TCGA-55-8089-01 6 36106176 36106176 C T MAPK13 Silent p.T239T 0.09 TCGA-55-8089-01 6 36929264 36929264 C T PI16 Missense_Mutation p.S144F 0.05 tolerated(0.08) probably_damaging(0.966) TCGA-55-8089-01 6 38775465 38775465 C T DNAH8 Missense_Mutation p.T860I 0.14 benign(0.006) TCGA-55-8089-01 6 38820980 38820980 G C DNAH8 Missense_Mutation p.A1647P 0.15 probably_damaging(0.999) TCGA-55-8089-01 6 41029436 41029436 G C APOBEC2 Missense_Mutation p.K167N 0.19 tolerated(0.05) possibly_damaging(0.483) TCGA-55-8089-01 6 41029442 41029442 G T APOBEC2 Silent p.L169L 0.21 TCGA-55-8089-01 6 41557825 41557825 C G FOXP4 Missense_Mutation p.P425R 0.09 tolerated(0.16) possibly_damaging(0.536) TCGA-55-8089-01 6 42986281 42986281 G T KLHDC3 Silent p.R240R 0.08 TCGA-55-8089-01 6 49754966 49754966 G T PGK2 5'UTR 0.30 TCGA-55-8089-01 6 56917955 56917955 C T KIAA1586 Nonsense_Mutation p.Q220* 0.09 TCGA-55-8089-01 6 70877916 70877916 G A COL19A1 Splice_Site p.X816_splice 0.17 TCGA-55-8089-01 6 74176132 74176132 G T MTO1 Splice_Site p.X139_splice 0.25 TCGA-55-8089-01 6 76602276 76602276 G A MYO6 Silent p.Q992Q 0.17 TCGA-55-8089-01 6 96054070 96054070 G T MANEA Missense_Mutation p.R393L 0.11 tolerated(0.06) benign(0.171) TCGA-55-8089-01 6 97053906 97053906 T A FHL5 Missense_Mutation p.F155I 0.16 deleterious(0) probably_damaging(0.986) TCGA-55-8089-01 7 100205678 100205678 G C PCOLCE Missense_Mutation p.K434N 0.18 tolerated(1) benign(0.06) TCGA-55-8089-01 7 100284308 100284308 G C GIGYF1 Missense_Mutation p.R220G 0.09 deleterious(0) unknown(0) TCGA-55-8089-01 7 100385560 100385560 C A ZAN Missense_Mutation p.D2342E 0.32 unknown(0) TCGA-55-8089-01 7 100675352 100675352 A T MUC17 Missense_Mutation p.T219S 0.13 benign(0.063) TCGA-55-8089-01 7 100677452 100677452 C A MUC17 Missense_Mutation p.P919T 0.17 unknown(0) TCGA-55-8089-01 7 100677500 100677500 C T MUC17 Missense_Mutation p.P935S 0.08 probably_damaging(0.936) TCGA-55-8089-01 7 100680437 100680437 A T MUC17 Missense_Mutation p.S1914C 0.07 probably_damaging(0.974) TCGA-55-8089-01 7 102453768 102453768 C A FBXL13 3'UTR 0.10 TCGA-55-8089-01 7 103292213 103292213 T A RELN Missense_Mutation p.N596I 0.14 deleterious(0) probably_damaging(0.997) TCGA-55-8089-01 7 103368630 103368630 A T RELN Silent p.T227T 0.14 TCGA-55-8089-01 7 105621546 105621546 G A CDHR3 Missense_Mutation p.E128K 0.06 deleterious(0) probably_damaging(0.997) TCGA-55-8089-01 7 107834519 107834519 G T NRCAM Missense_Mutation p.S576Y 0.11 deleterious(0.05) benign(0.217) TCGA-55-8089-01 7 112127046 112127046 G T LSMEM1 Missense_Mutation p.G66W 0.18 deleterious(0.02) probably_damaging(0.995) TCGA-55-8089-01 7 114282513 114282513 G C FOXP2 Missense_Mutation p.G300A 0.18 tolerated(0.64) unknown(0) TCGA-55-8089-01 7 11676260 11676260 G C THSD7A Missense_Mutation p.I173M 0.13 deleterious(0) possibly_damaging(0.887) TCGA-55-8089-01 7 119915309 119915309 C A KCND2 Missense_Mutation p.P208Q 0.09 deleterious(0.05) probably_damaging(1) TCGA-55-8089-01 7 123092863 123092863 C A IQUB Missense_Mutation p.E770D 0.20 tolerated_low_confidence(0.33) benign(0.004) TCGA-55-8089-01 7 127252051 127252051 G T PAX4 Missense_Mutation p.A232D 0.08 tolerated(0.06) benign(0.023) TCGA-55-8089-01 7 128478700 128478700 G A FLNC Silent p.Q418Q 0.24 TCGA-55-8089-01 7 128488648 128488648 T G FLNC Missense_Mutation p.D1538E 0.14 deleterious(0.03) probably_damaging(0.996) TCGA-55-8089-01 7 129946636 129946636 G C CPA4 Missense_Mutation p.D201H 0.05 deleterious(0) probably_damaging(0.994) TCGA-55-8089-01 7 136699808 136699808 G T CHRM2 Missense_Mutation p.A66S 0.24 deleterious(0) probably_damaging(0.997) TCGA-55-8089-01 7 138313001 138313001 C G SVOPL Missense_Mutation p.G324A 0.10 tolerated(0.76) benign(0.001) TCGA-55-8089-01 7 139091992 139091992 G C LUC7L2 Missense_Mutation p.A261P 0.16 deleterious(0) probably_damaging(0.998) TCGA-55-8089-01 7 139746684 139746684 C T PARP12 Missense_Mutation p.R329K 0.05 tolerated(0.39) benign(0.006) TCGA-55-8089-01 7 141754698 141754698 G T MGAM Missense_Mutation p.G1102C 0.16 deleterious(0) possibly_damaging(0.898) TCGA-55-8089-01 7 142099720 142099720 T A TRBV7-8 Missense_Mutation p.R28W 0.14 deleterious(0) probably_damaging(0.994) TCGA-55-8089-01 7 142232063 142232063 G A TRBV10-1 5'UTR 0.21 TCGA-55-8089-01 7 142651292 142651292 C G KEL Missense_Mutation p.M301I 0.06 tolerated(0.42) benign(0.026) TCGA-55-8089-01 7 143701575 143701575 C T OR6B1 Silent p.F162F 0.19 TCGA-55-8089-01 7 1480308 1480308 C A MICALL2 Missense_Mutation p.S575I 0.12 deleterious(0.01) benign(0.302) TCGA-55-8089-01 7 149515560 149515560 C A SSPO RNA 0.16 TCGA-55-8089-01 7 149575840 149575840 G C ATP6V0E2 Intron 0.16 TCGA-55-8089-01 7 150171294 150171294 T A GIMAP8 Missense_Mutation p.W293R 0.11 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 7 150417670 150417670 C A GIMAP1 Missense_Mutation p.T193N 0.14 tolerated(0.07) possibly_damaging(0.855) TCGA-55-8089-01 7 150697597 150697597 C A NOS3 Silent p.V381V 0.09 TCGA-55-8089-01 7 150749672 150749672 C A ASIC3 Missense_Mutation p.L517I 0.17 tolerated_low_confidence(0.46) possibly_damaging(0.801) TCGA-55-8089-01 7 150916206 150916206 C A ABCF2 Nonsense_Mutation p.E321* 0.16 TCGA-55-8089-01 7 154862762 154862762 G A HTR5A-AS1 Silent p.A84A 0.09 TCGA-55-8089-01 7 15601483 15601483 C T AGMO 5'UTR 0.06 TCGA-55-8089-01 7 157178305 157178305 G A DNAJB6 Missense_Mutation p.G231S 0.06 tolerated(0.07) unknown(0) TCGA-55-8089-01 7 20782523 20782523 G A ABCB5 Silent p.E1016E 0.21 TCGA-55-8089-01 7 21730500 21730500 G T DNAH11 Splice_Site p.X2021_splice 0.13 TCGA-55-8089-01 7 21943855 21943855 C A CDCA7L Missense_Mutation p.R357L 0.07 deleterious(0) probably_damaging(0.998) TCGA-55-8089-01 7 23296525 23296525 G T GPNMB Missense_Mutation p.A128S 0.34 tolerated(0.38) benign(0.002) TCGA-55-8089-01 7 2406666 2406666 G C EIF3B Missense_Mutation p.K463N 0.16 deleterious(0) probably_damaging(0.915) TCGA-55-8089-01 7 27134005 27134005 A T HOXA1 3'UTR 0.16 TCGA-55-8089-01 7 30795046 30795046 G T INMT Missense_Mutation p.W124L 0.14 deleterious(0.01) possibly_damaging(0.849) TCGA-55-8089-01 7 30795047 30795047 G T INMT Missense_Mutation p.W124C 0.18 deleterious(0.02) benign(0.173) TCGA-55-8089-01 7 34192745 34192745 C A BMPER Missense_Mutation p.P640T 0.12 deleterious(0) possibly_damaging(0.81) TCGA-55-8089-01 7 36445887 36445887 A T ANLN Silent p.P195P 0.07 TCGA-55-8089-01 7 37916466 37916466 C A NME8 Missense_Mutation p.A284D 0.12 tolerated(0.21) benign(0.066) TCGA-55-8089-01 7 38370130 38370130 G A TRGV8 Silent p.H56H 0.23 TCGA-55-8089-01 7 38431610 38431610 G A AMPH Silent p.V539V 0.18 TCGA-55-8089-01 7 44056041 44056041 G A POLR2J4 RNA 0.16 TCGA-55-8089-01 7 44190612 44190612 C T GCK Silent p.K143K 0.22 TCGA-55-8089-01 7 49842321 49842321 G T VWC2 Missense_Mutation p.E237D 0.08 deleterious(0) probably_damaging(0.994) TCGA-55-8089-01 7 55467774 55467774 G A LANCL2 Missense_Mutation p.V219M 0.90 deleterious(0) probably_damaging(0.985) TCGA-55-8089-01 7 57193792 57193792 G T ZNF479 Silent p.I65I 0.03 TCGA-55-8089-01 7 63982477 63982477 G A ZNF680 Missense_Mutation p.L219F 0.22 tolerated(1) benign(0) TCGA-55-8089-01 7 64526644 64526644 G T SNORA22 3'Flank 0.20 TCGA-55-8089-01 7 72277732 72277732 G C TYW1B Missense_Mutation p.S217C 0.15 tolerated(0.26) benign(0.019) TCGA-55-8089-01 7 72744304 72744304 G T FKBP6 Silent p.L139L 0.10 TCGA-55-8089-01 7 76033706 76033706 G T SRCRB4D Silent p.R17R 0.10 TCGA-55-8089-01 7 79828629 79828629 G T GNAI1 Missense_Mutation p.W131L 0.06 deleterious(0.01) possibly_damaging(0.81) TCGA-55-8089-01 7 79828630 79828630 G T GNAI1 Missense_Mutation p.W131C 0.06 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 7 80374536 80374536 T A SEMA3C Missense_Mutation p.I644F 0.16 tolerated(0.7) benign(0.224) TCGA-55-8089-01 7 8178645 8178645 C A ICA1 Missense_Mutation p.D330Y 0.06 deleterious(0.01) possibly_damaging(0.793) TCGA-55-8089-01 7 82581518 82581518 T A PCLO Silent p.S2917S 0.17 TCGA-55-8089-01 7 90895180 90895180 C T FZD1 Silent p.L329L 0.11 TCGA-55-8089-01 7 92017135 92017135 T C ANKIB1 Silent p.F592F 0.21 TCGA-55-8089-01 7 92017137 92017137 A C ANKIB1 Missense_Mutation p.Q593P 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-55-8089-01 7 92848636 92848636 A T HEPACAM2 Missense_Mutation p.F70I 0.14 tolerated(0.07) probably_damaging(0.992) TCGA-55-8089-01 7 94173781 94173781 G T CASD1 Missense_Mutation p.G472V 0.14 deleterious(0) probably_damaging(1) TCGA-55-8089-01 7 95115440 95115440 G A ASB4 Missense_Mutation p.E53K 0.14 tolerated(0.35) benign(0.084) TCGA-55-8089-01 7 96650310 96650310 G - DLX5 Frame_Shift_Del p.P203Rfs*106 0.10 TCGA-55-8089-01 7 98497371 98497371 C G TRRAP Missense_Mutation p.Q261E 0.18 benign(0.042) TCGA-55-8089-01 7 98528439 98528439 G T TRRAP Missense_Mutation p.D1193Y 0.16 probably_damaging(0.999) TCGA-55-8089-01 7 98573786 98573786 C T TRRAP Silent p.L2611L 0.09 TCGA-55-8089-01 7 98608812 98608812 G C TRRAP Silent p.L3678L 0.16 TCGA-55-8089-01 7 99700362 99700362 C T AP4M1 Missense_Mutation p.S71L 0.14 tolerated(0.19) benign(0.006) TCGA-55-8089-01 7 99717419 99717419 G C CNPY4 Missense_Mutation p.E18Q 0.11 tolerated(0.55) benign(0.002) TCGA-55-8089-01 8 101145987 101145987 G T FBXO43 3'UTR 0.15 TCGA-55-8089-01 8 101625260 101625260 G C SNX31 Silent p.L162L 0.06 TCGA-55-8089-01 8 103282300 103282300 C A UBR5 Missense_Mutation p.E2399D 0.21 tolerated(0.26) probably_damaging(0.926) TCGA-55-8089-01 8 103572925 103572925 C A ODF1 Missense_Mutation p.S189Y 0.19 deleterious(0) probably_damaging(0.99) TCGA-55-8089-01 8 10396239 10396239 G T PRSS55 Missense_Mutation p.S332I 0.14 tolerated(0.17) benign(0.168) TCGA-55-8089-01 8 10480329 10480329 T A RP1L1 Missense_Mutation p.Q128L 0.18 benign(0.147) TCGA-55-8089-01 8 107782203 107782203 G T ABRA Missense_Mutation p.H72Q 0.09 tolerated(0.61) benign(0.002) TCGA-55-8089-01 8 107782261 107782261 G T ABRA Missense_Mutation p.P53Q 0.12 deleterious(0) probably_damaging(1) TCGA-55-8089-01 8 109094883 109094883 G T RSPO2 5'UTR 0.21 TCGA-55-8089-01 8 109240593 109240593 G A EIF3E Nonsense_Mutation p.Q209* 0.12 TCGA-55-8089-01 8 110099896 110099896 G A TRHR Missense_Mutation p.R52K 0.11 tolerated(0.31) benign(0.062) TCGA-55-8089-01 8 113266556 113266556 C A CSMD3 Splice_Site p.X3346_splice 0.18 TCGA-55-8089-01 8 11640908 11640908 G T NEIL2 Missense_Mutation p.G230W 0.07 deleterious(0) probably_damaging(1) TCGA-55-8089-01 8 120638812 120638812 C T ENPP2 Silent p.L95L 0.22 TCGA-55-8089-01 8 124659188 124659188 G C KLHL38 Missense_Mutation p.P473A 0.23 deleterious(0.02) benign(0.002) TCGA-55-8089-01 8 125113375 125113375 G C FER1L6 Missense_Mutation p.D1641H 0.10 deleterious(0) probably_damaging(1) TCGA-55-8089-01 8 12870258 12870258 G T KIAA1456 Missense_Mutation p.G74W 0.12 tolerated(0.07) probably_damaging(0.978) TCGA-55-8089-01 8 130760706 130760706 G A GSDMC 3'UTR 0.11 TCGA-55-8089-01 8 133885383 133885383 G C TG Silent p.A185A 0.23 TCGA-55-8089-01 8 133899653 133899653 G T TG Missense_Mutation p.G679V 0.25 deleterious(0) probably_damaging(1) TCGA-55-8089-01 8 133912528 133912528 G T TG Missense_Mutation p.C1126F 0.12 deleterious(0) probably_damaging(0.998) TCGA-55-8089-01 8 139611077 139611077 C A COL22A1 Missense_Mutation p.G1417V 0.15 unknown(0) TCGA-55-8089-01 8 140630618 140630618 C G KCNK9 Missense_Mutation p.E336D 0.34 tolerated(0.12) benign(0.317) TCGA-55-8089-01 8 14181665 14181665 C T SGCZ Missense_Mutation p.G95S 0.19 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 8 143604066 143604066 G C BAI1 Missense_Mutation p.M1080I 0.40 tolerated(0.31) benign(0) TCGA-55-8089-01 8 145699766 145699766 C T FOXH1 Missense_Mutation p.R318Q 0.21 tolerated(1) benign(0) TCGA-55-8089-01 8 145742846 145742846 G A RECQL4 Silent p.A55A 0.33 TCGA-55-8089-01 8 17447249 17447249 G T PDGFRL Missense_Mutation p.D110Y 0.10 deleterious(0) probably_damaging(0.986) TCGA-55-8089-01 8 18258140 18258140 G T NAT2 Silent p.L209L 0.06 TCGA-55-8089-01 8 20031931 20031931 G T SLC18A1 Missense_Mutation p.T191N 0.23 deleterious(0.04) possibly_damaging(0.493) TCGA-55-8089-01 8 20054969 20054969 C T ATP6V1B2 Missense_Mutation p.P18S 0.30 tolerated_low_confidence(0.9) benign(0) TCGA-55-8089-01 8 22102500 22102500 C A POLR3D 5'Flank 0.15 TCGA-55-8089-01 8 23117812 23117812 G A CHMP7 Missense_Mutation p.E426K 0.17 tolerated(0.07) benign(0.157) TCGA-55-8089-01 8 25265501 25265501 C T DOCK5 Missense_Mutation p.S1699L 0.17 tolerated(0.71) benign(0.091) TCGA-55-8089-01 8 25708201 25708201 A T EBF2 Silent p.A535A 0.08 TCGA-55-8089-01 8 27295350 27295350 G C PTK2B Missense_Mutation p.Q532H 0.17 deleterious(0.02) probably_damaging(0.978) TCGA-55-8089-01 8 27380005 27380005 C G EPHX2 Silent p.L346L 0.10 TCGA-55-8089-01 8 28608213 28608213 C G EXTL3 Missense_Mutation p.Q864E 0.11 tolerated(0.14) benign(0.055) TCGA-55-8089-01 8 28704293 28704293 C G INTS9 Missense_Mutation p.D78H 0.11 deleterious(0) probably_damaging(0.998) TCGA-55-8089-01 8 28981626 28981626 C T KIF13B Silent p.E1089E 0.15 TCGA-55-8089-01 8 2965255 2965255 C T CSMD1 Missense_Mutation p.D2274N 0.12 benign(0.004) TCGA-55-8089-01 8 30539450 30539450 C G GSR Missense_Mutation p.E428Q 0.14 deleterious(0.02) probably_damaging(0.996) TCGA-55-8089-01 8 30889675 30889675 C A PURG Missense_Mutation p.M208I 0.20 tolerated_low_confidence(0.38) benign(0.11) TCGA-55-8089-01 8 33246470 33246470 G A FUT10 Intron 0.20 TCGA-55-8089-01 8 35542267 35542267 G C UNC5D Missense_Mutation p.V307L 0.13 deleterious(0.02) possibly_damaging(0.777) TCGA-55-8089-01 8 35583783 35583783 T A UNC5D Missense_Mutation p.S473T 0.15 tolerated(0.19) possibly_damaging(0.757) TCGA-55-8089-01 8 36768602 36768602 T C KCNU1 Missense_Mutation p.I829T 0.09 tolerated(0.1) benign(0.007) TCGA-55-8089-01 8 37697043 37697043 G T GPR124 Missense_Mutation p.W805L 0.08 deleterious(0.01) benign(0.17) TCGA-55-8089-01 8 38852975 38852975 C A TM2D2 Intron 0.12 TCGA-55-8089-01 8 41530364 41530364 A T ANK1 Missense_Mutation p.L1576Q 0.20 deleterious(0.02) probably_damaging(1) TCGA-55-8089-01 8 42591796 42591796 G C CHRNB3 3'UTR 0.09 TCGA-55-8089-01 8 53537278 53537278 T - RB1CC1 Frame_Shift_Del p.K1569Rfs*17 0.10 TCGA-55-8089-01 8 53540717 53540717 C G RB1CC1 Missense_Mutation p.G1504A 0.10 deleterious(0) probably_damaging(0.984) TCGA-55-8089-01 8 54142044 54142044 C T OPRK1 Missense_Mutation p.G319D 0.09 deleterious(0) probably_damaging(1) TCGA-55-8089-01 8 55049216 55049216 A T MRPL15 Missense_Mutation p.E85V 0.14 tolerated(0.1) benign(0.033) TCGA-55-8089-01 8 55541993 55541993 C T RP1 Missense_Mutation p.H1851Y 0.13 tolerated(0.99) benign(0.023) TCGA-55-8089-01 8 59058960 59058960 C A FAM110B Missense_Mutation p.D57E 0.08 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 8 64100001 64100001 G C YTHDF3 Missense_Mutation p.E477Q 0.14 tolerated(0.39) possibly_damaging(0.607) TCGA-55-8089-01 8 6420408 6420408 G T ANGPT2 Silent p.A16A 0.09 TCGA-55-8089-01 8 642599 642599 C A ERICH1 Missense_Mutation p.E61D 0.17 tolerated(0.27) possibly_damaging(0.554) TCGA-55-8089-01 8 65494151 65494151 G A BHLHE22 Silent p.V268V 0.07 TCGA-55-8089-01 8 67061897 67061897 G C TRIM55 Missense_Mutation p.Q207H 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-55-8089-01 8 67062048 67062048 G A TRIM55 Missense_Mutation p.V258I 0.09 tolerated(0.05) possibly_damaging(0.579) TCGA-55-8089-01 8 68139489 68139489 G A ARFGEF1 Nonsense_Mutation p.Q1267* 0.15 TCGA-55-8089-01 8 68178245 68178245 C T ARFGEF1 Missense_Mutation p.D707N 0.12 tolerated(0.08) benign(0.408) TCGA-55-8089-01 8 7308695 7308695 C T SPAG11B Intron 0.07 TCGA-55-8089-01 8 77617980 77617980 G T ZFHX4 Missense_Mutation p.G553C 0.17 benign(0.079) TCGA-55-8089-01 8 77766815 77766815 G T ZFHX4 Missense_Mutation p.G2553V 0.13 probably_damaging(0.943) TCGA-55-8089-01 8 80942443 80942443 C A MRPS28 Missense_Mutation p.S14I 0.17 deleterious_low_confidence(0) possibly_damaging(0.613) TCGA-55-8089-01 8 82665358 82665358 G T CHMP4C Missense_Mutation p.G84C 0.08 deleterious(0) probably_damaging(0.999) TCGA-55-8089-01 8 86357394 86357394 G A CA3 Missense_Mutation p.E152K 0.10 tolerated(0.8) probably_damaging(0.994) TCGA-55-8089-01 8 90994959 90994959 T A NBN Silent p.V54V 0.08 TCGA-55-8089-01 8 95773926 95773926 A T DPY19L4 Splice_Site p.X246_splice 0.15 TCGA-55-8089-01 8 95802216 95802216 G A DPY19L4 3'UTR 0.19 TCGA-55-8089-01 9 101825334 101825334 A G COL15A1 Silent p.P1198P 0.12 TCGA-55-8089-01 9 117119236 117119236 G A AKNA Missense_Mutation p.A918V 0.21 tolerated(0.71) benign(0.136) TCGA-55-8089-01 9 117552787 117552787 G C TNFSF15 Missense_Mutation p.S234C 0.20 deleterious(0.01) probably_damaging(0.965) TCGA-55-8089-01 9 123170668 123170668 C T CDK5RAP2 Silent p.L1561L 0.13 TCGA-55-8089-01 9 124118350 124118350 G A STOM Missense_Mutation p.S49L 0.14 deleterious(0) possibly_damaging(0.703) TCGA-55-8089-01 9 125148820 125148820 C T PTGS1 Nonsense_Mutation p.Q369* 0.17 TCGA-55-8089-01 9 125282162 125282162 T A OR1J4 Missense_Mutation p.V248E 0.21 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-55-8089-01 9 128201184 128201184 C G MAPKAP1 Missense_Mutation p.K517N 0.23 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-55-8089-01 9 131073868 131073868 C T TRUB2 Missense_Mutation p.R158K 0.14 tolerated(0.06) possibly_damaging(0.507) TCGA-55-8089-01 9 131360769 131360769 G T SPTAN1 Missense_Mutation p.A1169S 0.32 tolerated(0.58) benign(0.114) TCGA-55-8089-01 9 133489696 133489696 G A FUBP3 Missense_Mutation p.R123K 0.18 deleterious(0) probably_damaging(0.99) TCGA-55-8089-01 9 135975625 135975625 C G RALGDS Intron 0.16 TCGA-55-8089-01 9 136259458 136259458 C A C9orf96 Missense_Mutation p.N208K 0.21 tolerated(0.9) benign(0.004) TCGA-55-8089-01 9 136380688 136380688 C T TMEM8C Silent p.K147K 0.18 TCGA-55-8089-01 9 136401770 136401770 G T ADAMTSL2 5'UTR 0.17 TCGA-55-8089-01 9 139250911 139250911 G A GPSM1 Missense_Mutation p.R577Q 0.21 tolerated(0.06) probably_damaging(0.999) TCGA-55-8089-01 9 139299115 139299115 C A SDCCAG3 Missense_Mutation p.V346L 0.13 tolerated(0.38) benign(0.002) TCGA-55-8089-01 9 21971003 21971003 C A CDKN2A Nonsense_Mutation p.E119* 0.16 TCGA-55-8089-01 9 2810374 2810374 C T KIAA0020 Missense_Mutation p.D565N 0.15 deleterious(0) probably_damaging(0.994) TCGA-55-8089-01 9 34971588 34971588 G T KIAA1045 Missense_Mutation p.R98L 0.18 deleterious(0.04) benign(0.239) TCGA-55-8089-01 9 37432011 37432011 C A GRHPR Missense_Mutation p.D247E 0.19 tolerated(0.32) benign(0) TCGA-55-8089-01 9 39887511 39887511 C A SPATA31A2 Silent p.A166A 0.20 TCGA-55-8089-01 9 40773144 40773144 C A ZNF658 Nonsense_Mutation p.E711* 0.11 TCGA-55-8089-01 9 43627666 43627666 A G SPATA31A6 Missense_Mutation p.W341R 0.18 tolerated(0.11) benign(0.015) TCGA-55-8089-01 9 7174678 7174678 C A KDM4C Nonsense_Mutation p.Y1040* 0.11 TCGA-55-8089-01 9 74838121 74838121 A T GDA Missense_Mutation p.K231I 0.19 tolerated(0.06) benign(0.156) TCGA-55-8089-01 9 8486043 8486043 A C PTPRD Missense_Mutation p.L925R 0.27 deleterious(0.02) probably_damaging(0.93) TCGA-55-8089-01 9 90535265 90535265 G C SPATA31C1 RNA 0.23 TCGA-55-8089-01 X 101910823 101910823 G A GPRASP1 Missense_Mutation p.R661K 0.21 tolerated(0.26) benign(0.005) TCGA-55-8089-01 X 102339811 102339811 C T NXF3 Missense_Mutation p.G10D 0.31 tolerated(0.19) benign(0.003) TCGA-55-8089-01 X 102968473 102968473 C A GLRA4 Missense_Mutation p.R353L 0.28 tolerated(0.08) possibly_damaging(0.662) TCGA-55-8089-01 X 107320689 107320689 C T VSIG1 3'UTR 0.32 TCGA-55-8089-01 X 109697320 109697321 - G RGAG1 Frame_Shift_Ins p.S1161Lfs*11 0.18 TCGA-55-8089-01 X 109764348 109764348 G T TDGF1P3 RNA 0.20 TCGA-55-8089-01 X 111698619 111698619 C G ZCCHC16 Missense_Mutation p.D221E 0.27 tolerated(0.19) benign(0.013) TCGA-55-8089-01 X 11790315 11790315 G A MSL3 Missense_Mutation p.G441D 0.27 tolerated(0.06) benign(0.175) TCGA-55-8089-01 X 119004824 119004824 C A RNF113A Silent p.V251V 0.24 TCGA-55-8089-01 X 119005295 119005295 C G RNF113A Missense_Mutation p.E94D 0.33 tolerated(0.46) benign(0.002) TCGA-55-8089-01 X 135488008 135488008 G T GPR112 Missense_Mutation p.D2938Y 0.31 deleterious(0) probably_damaging(0.997) TCGA-55-8089-01 X 140994393 140994393 G C MAGEC1 Missense_Mutation p.E401D 0.33 deleterious_low_confidence(0.01) benign(0.217) TCGA-55-8089-01 X 140995384 140995384 C A MAGEC1 Missense_Mutation p.Q732K 0.25 deleterious_low_confidence(0.01) benign(0.042) TCGA-55-8089-01 X 141291186 141291186 G T MAGEC2 Silent p.A196A 0.23 TCGA-55-8089-01 X 142716361 142716361 C A SLITRK4 3'UTR 0.56 TCGA-55-8089-01 X 142967421 142967421 G A UBE2NL Missense_Mutation p.M73I 0.23 tolerated(0.11) benign(0.007) TCGA-55-8089-01 X 148037333 148037333 G T AFF2 Missense_Mutation p.R586S 0.32 deleterious(0.01) benign(0.138) TCGA-55-8089-01 X 150349262 150349262 C A GPR50 Missense_Mutation p.H403N 0.27 tolerated_low_confidence(0.05) benign(0.435) TCGA-55-8089-01 X 150844493 150844493 G A PASD1 Missense_Mutation p.E734K 0.28 tolerated(0.21) possibly_damaging(0.502) TCGA-55-8089-01 X 151283820 151283820 G T RP11-1007I13.4 RNA 0.30 TCGA-55-8089-01 X 153221645 153221645 C A HCFC1 Missense_Mutation p.M951I 0.32 tolerated_low_confidence(0.15) benign(0.014) TCGA-55-8089-01 X 2161157 2161157 C A DHRSX Silent p.V237V 0.14 TCGA-55-8089-01 X 32328262 32328262 G T DMD Silent p.L2018L 0.21 TCGA-55-8089-01 X 34149089 34149089 C G FAM47A Missense_Mutation p.R436T 0.16 tolerated(0.08) probably_damaging(0.943) TCGA-55-8089-01 X 34149654 34149654 G C FAM47A Missense_Mutation p.R248G 0.17 tolerated(0.44) benign(0) TCGA-55-8089-01 X 34961596 34961596 C A FAM47B Silent p.P216P 0.23 TCGA-55-8089-01 X 35820908 35820908 G A MAGEB16 Missense_Mutation p.G199S 0.32 tolerated(0.16) possibly_damaging(0.451) TCGA-55-8089-01 X 39932117 39932117 C T BCOR Missense_Mutation p.A828T 0.28 tolerated(0.65) benign(0.005) TCGA-55-8089-01 X 39932118 39932118 T G BCOR Silent p.A827A 0.31 TCGA-55-8089-01 X 49069237 49069237 G A CACNA1F Missense_Mutation p.R1289C 0.14 deleterious(0) possibly_damaging(0.869) TCGA-55-8089-01 X 49455912 49455912 C A PAGE1 Missense_Mutation p.G78C 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-55-8089-01 X 49957192 49957192 C A AKAP4 Missense_Mutation p.L724F 0.28 deleterious(0.02) probably_damaging(0.992) TCGA-55-8089-01 X 54040929 54040929 C G PHF8 Missense_Mutation p.E258Q 0.31 deleterious(0.01) benign(0.324) TCGA-55-8089-01 X 5821825 5821825 C A NLGN4X Silent p.R298R 0.27 TCGA-55-8089-01 X 63409803 63409803 T A AMER1 Missense_Mutation p.T1122S 0.33 tolerated(0.18) benign(0.166) TCGA-55-8089-01 X 65392223 65392223 A T HEPH Missense_Mutation p.D119V 0.38 deleterious(0) benign(0.224) TCGA-55-8089-01 X 70519987 70519987 G A NONO 3'UTR 0.33 TCGA-55-8089-01 X 72667095 72667095 C A CDX4 Nonsense_Mutation p.Y2* 0.26 TCGA-55-8089-01 X 73044544 73044544 C A XIST RNA 0.35 TCGA-55-8089-01 X 73046470 73046470 G T XIST RNA 0.33 TCGA-55-8089-01 X 73062658 73062658 A T XIST RNA 0.35 TCGA-55-8089-01 X 77224753 77224753 G T PGAM4 Missense_Mutation p.P128H 0.25 deleterious(0.02) possibly_damaging(0.832) TCGA-55-8089-01 X 77287027 77287027 G A ATP7A Missense_Mutation p.E1081K 0.30 deleterious(0) probably_damaging(1) TCGA-55-8089-01 X 83128433 83128433 A T CYLC1 Silent p.S239S 0.38 TCGA-55-8089-01 X 86888867 86888867 G A KLHL4 Missense_Mutation p.M556I 0.15 deleterious(0.01) benign(0.219) TCGA-55-8089-01 X 91134242 91134242 C T PCDH11X Silent p.F1001F 0.31 TCGA-55-8089-01 X 92927182 92927182 C T NAP1L3 Silent p.V374V 0.19 TCGA-55-8089-01 X 92965025 92965025 G T FAM133A Missense_Mutation p.D203Y 0.38 deleterious_low_confidence(0) unknown(0) TCGA-55-8089-01 X 96220181 96220181 A G DIAPH2 Silent p.A675A 0.44 TCGA-55-8089-01 Y 21870185 21870185 C A KDM5D Missense_Mutation p.R1069I 0.38 deleterious(0) benign(0.411) TCGA-55-8089-01 Y 21871585 21871585 C A KDM5D Silent p.L898L 0.20 TCGA-55-8090-01 11 20869200 20869200 G T NELL1 Missense_Mutation p.R136M 0.24 deleterious(0.01) probably_damaging(0.971) TCGA-55-8090-01 11 2191025 2191025 G T TH Missense_Mutation p.A87E 0.31 tolerated(0.35) benign(0.022) TCGA-55-8090-01 11 5475045 5475045 G T OR51I2 Missense_Mutation p.M109I 0.28 tolerated(0.41) benign(0.256) TCGA-55-8090-01 11 55433392 55433392 C T OR4C6 Silent p.V250V 0.16 TCGA-55-8090-01 11 6661629 6661629 C A DCHS1 Nonsense_Mutation p.E406* 0.24 TCGA-55-8090-01 11 78413037 78413037 A T TENM4 Missense_Mutation p.S1541T 0.32 deleterious(0.04) benign(0.066) TCGA-55-8090-01 11 8111703 8111703 C T TUB Missense_Mutation p.R115W 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-55-8090-01 12 104496780 104496780 C T HCFC2 Missense_Mutation p.P703L 0.31 deleterious(0.03) probably_damaging(0.99) TCGA-55-8090-01 12 13717356 13717356 C T GRIN2B Missense_Mutation p.R939H 0.25 tolerated(0.13) benign(0.136) TCGA-55-8090-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.15 deleterious(0) possibly_damaging(0.479) TCGA-55-8090-01 12 48073277 48073277 G C RPAP3 Missense_Mutation p.T429S 0.24 tolerated(0.15) benign(0.017) TCGA-55-8090-01 12 8234825 8234825 T A NECAP1 5'UTR 0.31 TCGA-55-8090-01 13 28897003 28897003 G T FLT1 Missense_Mutation p.S959R 0.27 tolerated(0.37) possibly_damaging(0.605) TCGA-55-8090-01 14 101510597 101510597 G T MIR1185-2 RNA 0.19 TCGA-55-8090-01 14 66096228 66096228 A T FUT8 Silent p.L167L 0.33 TCGA-55-8090-01 14 67671583 67671583 A T FAM71D Missense_Mutation p.D230V 0.13 deleterious_low_confidence(0) benign(0.424) TCGA-55-8090-01 15 25221490 25221490 G T SNRPN Missense_Mutation p.R65L 0.20 deleterious(0) probably_damaging(0.991) TCGA-55-8090-01 15 25463652 25463652 C A SNORD115-27 5'Flank 0.48 TCGA-55-8090-01 15 41689208 41689208 A C NDUFAF1 Missense_Mutation p.F17C 0.53 tolerated(1) benign(0) TCGA-55-8090-01 15 49170852 49170852 C G EID1 Missense_Mutation p.A160G 0.31 tolerated(0.09) possibly_damaging(0.861) TCGA-55-8090-01 15 83933324 83933324 G A BNC1 Missense_Mutation p.P227S 0.26 tolerated(0.24) benign(0.343) TCGA-55-8090-01 16 20477003 20477003 C A ACSM2A Silent p.P114P 0.27 TCGA-55-8090-01 16 4924403 4924403 C T UBN1 Silent p.D664D 0.24 TCGA-55-8090-01 17 34236038 34236038 G T AC015849.16 RNA 0.19 TCGA-55-8090-01 17 65184456 65184456 T A HELZ Missense_Mutation p.I381F 0.34 deleterious(0) possibly_damaging(0.65) TCGA-55-8090-01 17 78318846 78318846 G T RNF213 Silent p.P2237P 0.22 TCGA-55-8090-01 18 30260434 30260434 G T KLHL14 Missense_Mutation p.S456Y 0.12 deleterious(0.01) possibly_damaging(0.583) TCGA-55-8090-01 18 55998078 55998078 T C NEDD4L Missense_Mutation p.S308P 0.35 tolerated(0.1) possibly_damaging(0.881) TCGA-55-8090-01 18 6243370 6243370 C A L3MBTL4 Missense_Mutation p.W128L 0.16 deleterious(0) probably_damaging(1) TCGA-55-8090-01 19 15839703 15839703 C A OR10H2 Missense_Mutation p.P284T 0.43 deleterious(0) benign(0.438) TCGA-55-8090-01 19 16035679 16035679 C T CYP4F11 Missense_Mutation p.R180H 0.31 tolerated(0.27) benign(0.009) TCGA-55-8090-01 19 50161557 50161557 C T SCAF1 Silent p.H1280H 0.36 TCGA-55-8090-01 19 50393827 50393827 C A IL4I1 Silent p.L290L 0.22 TCGA-55-8090-01 19 52034668 52034668 G A SIGLEC6 Missense_Mutation p.P58L 0.13 tolerated(0.15) benign(0) TCGA-55-8090-01 19 54781435 54781435 G T LILRB2 Silent p.P443P 0.24 TCGA-55-8090-01 19 55142074 55142074 C T LILRB1 5'UTR 0.35 TCGA-55-8090-01 1 109271482 109271482 C A FNDC7 Missense_Mutation p.P533H 0.14 deleterious(0) probably_damaging(1) TCGA-55-8090-01 1 12342797 12342797 A G VPS13D Silent p.L1546L 0.12 TCGA-55-8090-01 1 152195750 152195750 G A HRNR 5'UTR 0.16 TCGA-55-8090-01 1 152671780 152671780 C G LCE2A 3'UTR 0.33 TCGA-55-8090-01 1 158436099 158436099 G A OR10K1 Missense_Mutation p.V250I 0.39 tolerated(0.37) benign(0.047) TCGA-55-8090-01 1 159175656 159175656 C A DARC Missense_Mutation p.Q145K 0.45 deleterious(0.01) probably_damaging(0.996) TCGA-55-8090-01 1 162336986 162336986 G T RP11-565P22.6 Missense_Mutation p.S103I 0.47 deleterious(0.01) possibly_damaging(0.525) TCGA-55-8090-01 1 182844009 182844009 A G DHX9 Missense_Mutation p.I579V 0.40 tolerated(0.35) benign(0.026) TCGA-55-8090-01 1 192127762 192127762 G C RGS18 5'UTR 0.12 TCGA-55-8090-01 1 233190139 233190139 C A PCNXL2 Missense_Mutation p.R1409L 0.12 deleterious(0) probably_damaging(0.996) TCGA-55-8090-01 1 248263325 248263325 C A OR2L13 Silent p.S216S 0.25 TCGA-55-8090-01 1 31447621 31447621 A G PUM1 Silent p.Y461Y 0.13 TCGA-55-8090-01 1 41475253 41475253 C T CTPS1 Silent p.L561L 0.11 TCGA-55-8090-01 1 47400213 47400213 C T CYP4A11 Missense_Mutation p.R270K 0.19 deleterious(0.01) possibly_damaging(0.85) TCGA-55-8090-01 1 85127998 85127998 G A SSX2IP Silent p.I270I 0.28 TCGA-55-8090-01 20 36640436 36640436 T C TTI1 Missense_Mutation p.I595V 0.33 tolerated(0.41) benign(0.011) TCGA-55-8090-01 20 36759493 36759493 A T TGM2 Splice_Site p.X638_splice 0.17 TCGA-55-8090-01 20 4229135 4229135 T C ADRA1D Missense_Mutation p.E157G 0.44 deleterious(0) probably_damaging(0.994) TCGA-55-8090-01 20 46365592 46365592 G A SULF2 Silent p.P90P 0.39 TCGA-55-8090-01 21 10906991 10906991 G A TPTE Missense_Mutation p.R524W 0.07 tolerated(1) benign(0) TCGA-55-8090-01 21 30329201 30329201 C - LTN1 Frame_Shift_Del p.E1034Nfs*4 0.17 TCGA-55-8090-01 21 31655019 31655019 G T KRTAP24-1 Missense_Mutation p.P78T 0.18 tolerated(0.4) probably_damaging(0.975) TCGA-55-8090-01 22 31091088 31091088 G T OSBP2 Silent p.P64P 0.19 TCGA-55-8090-01 22 31484887 31484887 G T SMTN Missense_Mutation p.G135W 0.28 deleterious(0) possibly_damaging(0.896) TCGA-55-8090-01 22 45795221 45795221 G A SMC1B Silent p.T289T 0.20 TCGA-55-8090-01 2 163031437 163031437 C A FAP Nonsense_Mutation p.G637* 0.37 TCGA-55-8090-01 2 17699040 17699040 T C RAD51AP2 Missense_Mutation p.N215D 0.22 tolerated(1) benign(0) TCGA-55-8090-01 2 220112939 220112941 ATG - STK16 In_Frame_Del p.M229del 0.30 TCGA-55-8090-01 2 238267212 238267212 A G COL6A3 Silent p.P2141P 0.21 TCGA-55-8090-01 2 27324379 27324379 C T CGREF1 Silent p.G240G 0.26 TCGA-55-8090-01 2 55615934 55615934 G A CCDC88A Nonsense_Mutation p.Q85* 0.25 TCGA-55-8090-01 3 105400682 105400682 A - CBLB Intron 0.32 TCGA-55-8090-01 3 12856687 12856687 C G CAND2 Missense_Mutation p.R352G 0.32 deleterious(0) probably_damaging(0.999) TCGA-55-8090-01 3 185639873 185639873 C G TRA2B Missense_Mutation p.R188S 0.09 deleterious(0.03) benign(0.18) TCGA-55-8090-01 3 47385400 47385400 G T KLHL18 Missense_Mutation p.G565V 0.30 deleterious(0) probably_damaging(0.999) TCGA-55-8090-01 3 62262672 62262672 A C PTPRG Silent p.A1195A 0.19 TCGA-55-8090-01 3 64608232 64608232 A G ADAMTS9 Missense_Mutation p.L807P 0.34 deleterious(0) probably_damaging(0.986) TCGA-55-8090-01 3 69230382 69230382 C A FRMD4B Missense_Mutation p.R840L 0.44 deleterious(0.01) benign(0.209) TCGA-55-8090-01 3 71026123 71026123 G A FOXP1 Missense_Mutation p.A502V 0.11 deleterious(0) possibly_damaging(0.78) TCGA-55-8090-01 3 8775658 8775658 T G CAV3 Missense_Mutation p.I32M 0.23 tolerated(0.2) probably_damaging(0.93) TCGA-55-8090-01 4 119163220 119163220 T A NDST3 Missense_Mutation p.L772Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-55-8090-01 4 13546026 13546026 C T NKX3-2 Missense_Mutation p.G5S 0.38 tolerated_low_confidence(0.3) benign(0.009) TCGA-55-8090-01 4 160277129 160277129 C G RAPGEF2 Silent p.A1431A 0.14 TCGA-55-8090-01 4 24521863 24521863 C G MIR573 RNA 0.31 TCGA-55-8090-01 4 57686701 57686701 C T SPINK2 Splice_Site p.X33_splice 0.23 TCGA-55-8090-01 4 94344000 94344000 G A GRID2 Missense_Mutation p.D476N 0.09 tolerated(0.15) benign(0.106) TCGA-55-8090-01 4 96124010 96124010 C A UNC5C Missense_Mutation p.V670L 0.24 tolerated(0.05) benign(0.008) TCGA-55-8090-01 5 13917345 13917345 A G DNAH5 Silent p.I332I 0.25 TCGA-55-8090-01 5 149512387 149512387 G C PDGFRB Missense_Mutation p.F351L 0.43 tolerated(1) benign(0.001) TCGA-55-8090-01 5 156186433 156186433 A G SGCD 3'UTR 0.32 TCGA-55-8090-01 5 167946253 167946254 - T RARS 3'UTR 0.43 TCGA-55-8090-01 5 76264684 76264684 G T CRHBP Missense_Mutation p.G315W 0.24 deleterious(0) benign(0.404) TCGA-55-8090-01 5 9054287 9054287 A T SEMA5A Silent p.S867S 0.25 TCGA-55-8090-01 6 106555402 106555402 T A PRDM1 3'UTR 0.47 TCGA-55-8090-01 6 112015907 112015907 C A FYN Missense_Mutation p.G348V 0.19 deleterious(0) probably_damaging(1) TCGA-55-8090-01 6 146351107 146351107 A T GRM1 Missense_Mutation p.T152S 0.30 tolerated(0.93) benign(0.012) TCGA-55-8090-01 6 18264071 18264072 CA - DEK Splice_Site p.X49_splice 0.17 TCGA-55-8090-01 6 80744811 80744811 T G TTK Missense_Mutation p.L575W 0.34 deleterious(0) probably_damaging(1) TCGA-55-8090-01 6 90077868 90077868 C T RRAGD Silent p.V370V 0.10 TCGA-55-8090-01 7 106545849 106545849 C G PIK3CG 3'UTR 0.27 TCGA-55-8090-01 7 142494949 142494949 G T TRBJ2-6 Missense_Mutation p.G10V 0.23 unknown(0) TCGA-55-8090-01 7 23015874 23015874 T - FAM126A Frame_Shift_Del p.Y194Sfs*27 0.24 TCGA-55-8090-01 7 39379609 39379609 C A POU6F2 Missense_Mutation p.L294I 0.25 deleterious_low_confidence(0.01) unknown(0) TCGA-55-8090-01 7 50514477 50514477 C A FIGNL1 Missense_Mutation p.R170L 0.15 tolerated(0.32) benign(0.003) TCGA-55-8090-01 7 64498882 64498882 G T CCT6P3 RNA 0.37 TCGA-55-8090-01 7 64863891 64863891 A T ZNF92 Missense_Mutation p.E288D 0.31 tolerated(0.06) possibly_damaging(0.901) TCGA-55-8090-01 7 72849818 72849818 G A FZD9 Missense_Mutation p.R494Q 0.15 tolerated(0.4) possibly_damaging(0.553) TCGA-55-8090-01 7 76871034 76871034 T A CCDC146 Missense_Mutation p.L89Q 0.27 deleterious(0) probably_damaging(1) TCGA-55-8090-01 7 84642105 84642105 G T SEMA3D Silent p.I587I 0.24 TCGA-55-8090-01 7 92761099 92761099 T C SAMD9L Missense_Mutation p.N1396D 0.28 tolerated(0.26) benign(0.098) TCGA-55-8090-01 8 113702222 113702222 C G CSMD3 Missense_Mutation p.G677A 0.21 deleterious(0) probably_damaging(1) TCGA-55-8090-01 8 22277218 22277218 G T SLC39A14 3'UTR 0.23 TCGA-55-8090-01 8 29018290 29018290 G A KIF13B Missense_Mutation p.A455V 0.06 deleterious(0) possibly_damaging(0.826) TCGA-55-8090-01 8 41553939 41553939 C A ANK1 Nonsense_Mutation p.E1009* 0.18 TCGA-55-8090-01 9 79323199 79323199 G T PRUNE2 Missense_Mutation p.Q1331K 0.61 tolerated(0.93) benign(0.001) TCGA-55-8090-01 X 100667241 100667241 A G HNRNPH2 Missense_Mutation p.N89D 0.59 deleterious(0.04) benign(0.097) TCGA-55-8090-01 X 115574910 115574910 G A SLC6A14 Missense_Mutation p.G203D 0.12 tolerated(0.36) benign(0.005) TCGA-55-8090-01 X 11790366 11790366 G A MSL3 Missense_Mutation p.R458Q 0.68 deleterious(0.03) possibly_damaging(0.576) TCGA-55-8090-01 X 153171966 153171966 C T AVPR2 Intron 0.32 TCGA-55-8090-01 X 18622571 18622571 G T CDKL5 Silent p.A509A 0.51 TCGA-55-8090-01 X 47040923 47040923 G T RBM10 Nonsense_Mutation p.E485* 0.65 TCGA-55-8090-01 X 53566629 53566629 T A HUWE1 Missense_Mutation p.H3874L 0.52 unknown(0) TCGA-55-8090-01 X 72667109 72667109 T C CDX4 Missense_Mutation p.L7S 0.70 deleterious(0.01) benign(0.014) TCGA-55-8091-01 11 47371368 47371368 C A MYBPC3 Missense_Mutation p.G204V 0.08 deleterious(0) probably_damaging(1) TCGA-55-8091-01 12 122354249 122354249 C A PSMD9 3'UTR 0.05 TCGA-55-8091-01 12 77424046 77424046 G T E2F7 Missense_Mutation p.F483L 0.21 tolerated(0.83) benign(0.001) TCGA-55-8091-01 14 20295989 20295989 C T OR4N2 Missense_Mutation p.R128W 0.06 deleterious(0.04) benign(0.014) TCGA-55-8091-01 15 31294278 31294278 C T TRPM1 Missense_Mutation p.R1559H 0.42 tolerated_low_confidence(0.76) benign(0.003) TCGA-55-8091-01 15 68118525 68118525 G A SKOR1 Missense_Mutation p.R306H 0.20 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-55-8091-01 17 47230228 47230228 C T B4GALNT2 Silent p.H200H 0.10 TCGA-55-8091-01 17 61987511 61987511 G C CSHL1 Intron 0.05 TCGA-55-8091-01 18 48573418 48573418 T A SMAD4 Translation_Start_Site p.M1? 0.16 deleterious_low_confidence(0.01) benign(0.227) TCGA-55-8091-01 19 14091472 14091472 G A RFX1 Silent p.S217S 0.18 TCGA-55-8091-01 19 46998259 46998259 C T PNMAL2 Missense_Mutation p.R155K 0.34 tolerated(0.67) benign(0.001) TCGA-55-8091-01 1 12010521 12010521 G A PLOD1 Missense_Mutation p.R137K 0.08 tolerated(0.53) benign(0.008) TCGA-55-8091-01 1 157668197 157668197 G A FCRL3 Missense_Mutation p.A92V 0.04 deleterious(0.01) benign(0.396) TCGA-55-8091-01 1 177001910 177001910 G A ASTN1 Missense_Mutation p.R183C 0.12 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-55-8091-01 1 19478814 19478814 T C UBR4 Missense_Mutation p.N2330S 0.05 benign(0.043) TCGA-55-8091-01 1 204429716 204429716 T A PIK3C2B Missense_Mutation p.M462L 0.08 tolerated(1) benign(0.007) TCGA-55-8091-01 1 234367219 234367219 G T SLC35F3 Missense_Mutation p.V114L 0.28 tolerated(0.36) benign(0.001) TCGA-55-8091-01 1 248789976 248789976 C T OR2T11 Missense_Mutation p.D152N 0.36 tolerated(0.08) possibly_damaging(0.874) TCGA-55-8091-01 1 35370836 35370836 G A DLGAP3 Missense_Mutation p.P50L 0.36 deleterious(0) benign(0.005) TCGA-55-8091-01 21 38095422 38095422 C T SIM2 Silent p.S178S 0.29 TCGA-55-8091-01 22 26692923 26692923 G A SEZ6L Missense_Mutation p.V347I 0.26 tolerated(0.2) benign(0.05) TCGA-55-8091-01 2 11945256 11945256 C A LPIN1 Silent p.I790I 0.04 TCGA-55-8091-01 2 179639038 179639038 C T TTN Missense_Mutation p.R2318H 0.34 TCGA-55-8091-01 2 198571055 198571055 G A MARS2 Missense_Mutation p.G309D 0.25 deleterious(0) probably_damaging(1) TCGA-55-8091-01 3 19554592 19554592 C T KCNH8 Missense_Mutation p.S737L 0.25 tolerated(0.42) benign(0.022) TCGA-55-8091-01 5 140237185 140237185 G A PCDHA10 Missense_Mutation p.A518T 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.902) TCGA-55-8091-01 5 49701644 49701644 A G EMB Missense_Mutation p.V172A 0.19 tolerated(0.12) possibly_damaging(0.672) TCGA-55-8091-01 5 54281255 54281255 G T ESM1 Missense_Mutation p.H31N 0.05 tolerated(0.35) benign(0.026) TCGA-55-8091-01 5 64881965 64881965 C T PPWD1 Missense_Mutation p.S585L 0.14 deleterious(0.01) benign(0.024) TCGA-55-8091-01 6 110501725 110501725 C T CDC40 Silent p.S26S 0.28 TCGA-55-8091-01 6 111694646 111694646 T C REV3L Missense_Mutation p.S1638G 0.41 deleterious(0) probably_damaging(0.993) TCGA-55-8091-01 6 31936859 31936859 T C SKIV2L Missense_Mutation p.L1131P 0.20 deleterious(0) probably_damaging(1) TCGA-55-8091-01 7 45004684 45004684 G A MYO1G Missense_Mutation p.R796W 0.51 tolerated(0.16) probably_damaging(0.997) TCGA-55-8091-01 8 28210813 28210813 G A ZNF395 Silent p.P232P 0.07 TCGA-55-8091-01 X 148037365 148037365 G A AFF2 Missense_Mutation p.R597H 0.55 deleterious(0) probably_damaging(0.998) TCGA-55-8092-01 10 103343220 103343220 C A POLL Intron 0.15 TCGA-55-8092-01 10 105037100 105037100 C A INA Silent p.S44S 0.27 TCGA-55-8092-01 10 105452853 105452853 C A SH3PXD2A Intron 0.16 TCGA-55-8092-01 10 106130709 106130709 C G CCDC147 Missense_Mutation p.I329M 0.15 tolerated(1) benign(0.004) TCGA-55-8092-01 10 117885068 117885068 A G GFRA1 Missense_Mutation p.V145A 0.13 tolerated(0.74) benign(0.001) TCGA-55-8092-01 10 118315019 118315019 G T PNLIP Missense_Mutation p.G271W 0.14 deleterious(0) probably_damaging(0.998) TCGA-55-8092-01 10 119303181 119303181 C A EMX2 Missense_Mutation p.Q135K 0.31 deleterious(0.04) possibly_damaging(0.694) TCGA-55-8092-01 10 120354696 120354696 C G PRLHR Missense_Mutation p.A21P 0.14 tolerated(0.09) benign(0.053) TCGA-55-8092-01 10 121600468 121600468 T C MCMBP Missense_Mutation p.T379A 0.16 tolerated(1) benign(0.004) TCGA-55-8092-01 10 124344818 124344818 G A DMBT1 Silent p.S484S 0.15 TCGA-55-8092-01 10 124671262 124671262 G T FAM24A Missense_Mutation p.A38S 0.14 tolerated(1) benign(0.004) TCGA-55-8092-01 10 133107515 133107515 G T TCERG1L Silent p.S130S 0.34 TCGA-55-8092-01 10 135053272 135053272 C A VENTX Missense_Mutation p.H112N 0.23 tolerated(0.12) possibly_damaging(0.565) TCGA-55-8092-01 10 135209677 135209677 C G RP11-108K14.8 Nonsense_Mutation p.S68* 0.13 TCGA-55-8092-01 10 15175215 15175215 T G NMT2 Intron 0.10 TCGA-55-8092-01 10 15761599 15761599 C T ITGA8 Missense_Mutation p.G58S 0.30 deleterious(0) probably_damaging(1) TCGA-55-8092-01 10 15876551 15876551 C T FAM188A Missense_Mutation p.G214E 0.11 deleterious(0) possibly_damaging(0.697) TCGA-55-8092-01 10 16859039 16859039 C T RSU1 Silent p.E14E 0.12 TCGA-55-8092-01 10 16882916 16882916 T C CUBN Missense_Mutation p.E3265G 0.11 tolerated(0.17) benign(0.033) TCGA-55-8092-01 10 22678130 22678130 G T SPAG6 Silent p.V298V 0.43 TCGA-55-8092-01 10 24884930 24884930 C A ARHGAP21 Nonsense_Mutation p.E1174* 0.47 TCGA-55-8092-01 10 31138002 31138002 T A ZNF438 Silent p.I444I 0.46 TCGA-55-8092-01 10 37447480 37447480 C A ANKRD30A Silent p.A566A 0.12 TCGA-55-8092-01 10 37451602 37451602 C T ANKRD30A Silent p.F586F 0.05 TCGA-55-8092-01 10 403803 403803 G A DIP2C Silent p.L957L 0.13 TCGA-55-8092-01 10 50819247 50819247 C A SLC18A3 Missense_Mutation p.P154Q 0.08 deleterious(0) probably_damaging(1) TCGA-55-8092-01 10 55566670 55566670 A T PCDH15 Missense_Mutation p.L1572Q 0.31 deleterious_low_confidence(0) benign(0.003) TCGA-55-8092-01 10 55582532 55582532 G T PCDH15 Missense_Mutation p.Q1654K 0.30 deleterious_low_confidence(0.02) benign(0.064) TCGA-55-8092-01 10 6549436 6549436 C A PRKCQ Missense_Mutation p.R114L 0.42 deleterious(0) possibly_damaging(0.535) TCGA-55-8092-01 10 75487170 75487170 T A RP11-464F9.1 RNA 0.13 TCGA-55-8092-01 10 76803716 76803716 G A DUPD1 Missense_Mutation p.A87V 0.23 tolerated(0.1) probably_damaging(0.995) TCGA-55-8092-01 10 7682812 7682812 A T ITIH5 Silent p.I102I 0.09 TCGA-55-8092-01 10 7755155 7755155 G T ITIH2 Missense_Mutation p.G125V 0.08 deleterious(0) probably_damaging(0.992) TCGA-55-8092-01 10 7830131 7830131 G A ATP5C1 5'UTR 0.13 TCGA-55-8092-01 10 79614075 79614075 C A DLG5 Missense_Mutation p.R197L 0.22 deleterious(0) probably_damaging(0.999) TCGA-55-8092-01 10 81036935 81036935 C G ZMIZ1 Intron 0.11 TCGA-55-8092-01 10 95121315 95121315 C G MYOF Splice_Site p.X957_splice 0.19 TCGA-55-8092-01 10 96540285 96540285 G T CYP2C19 Missense_Mutation p.G171C 0.17 deleterious(0.03) possibly_damaging(0.663) TCGA-55-8092-01 11 100170098 100170098 C A CNTN5 Missense_Mutation p.Q864K 0.12 tolerated(0.17) benign(0.001) TCGA-55-8092-01 11 103870809 103870809 C A PDGFD Missense_Mutation p.G100V 0.12 deleterious(0) probably_damaging(0.982) TCGA-55-8092-01 11 1083821 1083821 C G MUC2 Missense_Mutation p.Q785E 0.20 possibly_damaging(0.554) TCGA-55-8092-01 11 116691431 116691431 C T APOA4 3'UTR 0.25 TCGA-55-8092-01 11 118971380 118971380 G A DPAGT1 Silent p.P152P 0.11 TCGA-55-8092-01 11 119535671 119535671 C A PVRL1 Missense_Mutation p.G447V 0.50 tolerated(0.52) probably_damaging(0.972) TCGA-55-8092-01 11 122774827 122774827 A C C11orf63 Missense_Mutation p.Q180P 0.15 tolerated(0.12) benign(0.077) TCGA-55-8092-01 11 123465533 123465533 G A GRAMD1B Missense_Mutation p.R144H 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-8092-01 11 123886409 123886409 T A OR10G4 Missense_Mutation p.I43N 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-8092-01 11 123909581 123909581 A T OR10G7 Missense_Mutation p.I43N 0.07 deleterious(0) probably_damaging(0.999) TCGA-55-8092-01 11 124412912 124412912 G T OR8B12 Silent p.V213V 0.12 TCGA-55-8092-01 11 124440489 124440489 A G OR8A1 Missense_Mutation p.I175M 0.16 tolerated(0.07) benign(0.363) TCGA-55-8092-01 11 124756672 124756672 A C ROBO4 Missense_Mutation p.Y828D 0.47 deleterious(0) possibly_damaging(0.485) TCGA-55-8092-01 11 126073187 126073187 C A RPUSD4 3'UTR 0.26 TCGA-55-8092-01 11 128709081 128709081 C A KCNJ1 Missense_Mutation p.G372V 0.30 deleterious(0) probably_damaging(1) TCGA-55-8092-01 11 129807520 129807520 G A PRDM10 Missense_Mutation p.H338Y 0.24 tolerated(0.21) possibly_damaging(0.558) TCGA-55-8092-01 11 132082031 132082031 C A NTM Silent p.I172I 0.23 TCGA-55-8092-01 11 13716476 13716476 G T FAR1 Missense_Mutation p.R55L 0.14 deleterious(0) probably_damaging(0.999) TCGA-55-8092-01 11 19735452 19735454 GGG TT NAV2 Frame_Shift_Del p.G71Lfs*29 0.42 TCGA-55-8092-01 11 20869300 20869300 G T NELL1 Splice_Site p.X169_splice 0.17 TCGA-55-8092-01 11 22382497 22382497 G A SLC17A6 Missense_Mutation p.E210K 0.12 deleterious(0) probably_damaging(0.99) TCGA-55-8092-01 11 22747863 22747863 G A GAS2 Missense_Mutation p.C98Y 0.10 deleterious(0.04) benign(0.007) TCGA-55-8092-01 11 30953366 30953366 C G DCDC1 Missense_Mutation p.R950T 0.10 tolerated(0.1) benign(0.004) TCGA-55-8092-01 11 31327191 31327191 G T DCDC1 Missense_Mutation p.P242H 0.15 deleterious(0.02) probably_damaging(0.983) TCGA-55-8092-01 11 33360935 33360935 G C HIPK3 Missense_Mutation p.A490P 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-55-8092-01 11 34073934 34073934 C T CAPRIN1 Intron 0.25 TCGA-55-8092-01 11 4406703 4406703 C T TRIM21 Missense_Mutation p.E414K 0.50 deleterious(0.02) possibly_damaging(0.831) TCGA-55-8092-01 11 44626732 44626732 G T CD82 Silent p.L87L 0.07 TCGA-55-8092-01 11 46726783 46726783 G T ZNF408 Silent p.L511L 0.10 TCGA-55-8092-01 11 4903927 4903927 C A OR51T1 Silent p.L293L 0.24 TCGA-55-8092-01 11 5632082 5632082 T C TRIM6 Missense_Mutation p.V354A 0.17 tolerated(0.27) benign(0.259) TCGA-55-8092-01 11 56380500 56380500 G A OR5M1 Missense_Mutation p.S160L 0.16 deleterious(0) benign(0.065) TCGA-55-8092-01 11 58126079 58126079 G T OR5B17 Missense_Mutation p.S155Y 0.07 deleterious_low_confidence(0) possibly_damaging(0.502) TCGA-55-8092-01 11 63330793 63330793 C A HRASLS2 Missense_Mutation p.A2S 0.31 tolerated(0.78) benign(0.01) TCGA-55-8092-01 11 64360916 64360916 G C SLC22A12 Missense_Mutation p.Q182H 0.09 deleterious(0.01) probably_damaging(0.954) TCGA-55-8092-01 11 64990988 64990988 C G SLC22A20 RNA 0.08 TCGA-55-8092-01 11 65684941 65684941 C A C11orf68 Nonsense_Mutation p.E291* 0.21 TCGA-55-8092-01 11 65822628 65822628 G A SF3B2 Missense_Mutation p.G114S 0.36 tolerated_low_confidence(0.12) probably_damaging(0.934) TCGA-55-8092-01 11 66333375 66333375 G C CTSF Silent p.A297A 0.31 TCGA-55-8092-01 11 66460553 66460553 C T SPTBN2 Missense_Mutation p.A1625T 0.20 tolerated(0.7) probably_damaging(0.998) TCGA-55-8092-01 11 70332284 70332284 C T SHANK2 Missense_Mutation p.G1373S 0.34 tolerated(0.55) possibly_damaging(0.862) TCGA-55-8092-01 11 9989900 9989900 C A SBF2 Missense_Mutation p.G530C 0.21 deleterious(0) probably_damaging(1) TCGA-55-8092-01 12 100897230 100897230 C T NR1H4 Missense_Mutation p.P22L 0.09 tolerated_low_confidence(0.17) benign(0.002) TCGA-55-8092-01 12 10225956 10225956 G T CLEC1A Missense_Mutation p.L200I 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-55-8092-01 12 108642154 108642154 C A WSCD2 3'UTR 0.21 TCGA-55-8092-01 12 109306225 109306225 G T SVOP 3'UTR 0.27 TCGA-55-8092-01 12 112147407 112147407 G T ACAD10 Silent p.L203L 0.27 TCGA-55-8092-01 12 112924279 112924279 G T PTPN11 Missense_Mutation p.G409W 0.08 deleterious(0.01) probably_damaging(0.982) TCGA-55-8092-01 12 115120784 115120784 G C TBX3 Silent p.T74T 0.23 TCGA-55-8092-01 12 123105167 123105167 A T KNTC1 Intron 0.37 TCGA-55-8092-01 12 124798748 124798748 G A FAM101A Missense_Mutation p.E29K 0.19 tolerated(0.07) probably_damaging(0.972) TCGA-55-8092-01 12 125811216 125811216 G T TMEM132B Missense_Mutation p.G16V 0.24 tolerated(0.28) benign(0.002) TCGA-55-8092-01 12 130648758 130648758 G T FZD10 Missense_Mutation p.R424L 0.38 deleterious(0) probably_damaging(0.998) TCGA-55-8092-01 12 14927357 14927357 C G H2AFJ 5'UTR 0.16 TCGA-55-8092-01 12 25232661 25232661 G T LRMP Missense_Mutation p.D70Y 0.10 deleterious_low_confidence(0) possibly_damaging(0.756) TCGA-55-8092-01 12 29640664 29640664 G A OVCH1 Missense_Mutation p.S285F 0.41 tolerated(0.56) benign(0.002) TCGA-55-8092-01 12 38714922 38714922 C G ALG10B Missense_Mutation p.C443W 0.38 deleterious(0.01) possibly_damaging(0.447) TCGA-55-8092-01 12 41318400 41318400 G C CNTN1 Missense_Mutation p.V148L 0.06 deleterious(0.05) possibly_damaging(0.845) TCGA-55-8092-01 12 46320459 46320459 C T SCAF11 Missense_Mutation p.D1009N 0.17 deleterious(0.01) benign(0.322) TCGA-55-8092-01 12 50188718 50188718 C A NCKAP5L Silent p.A975A 0.55 TCGA-55-8092-01 12 52709852 52709852 C T KRT83 Missense_Mutation p.E363K 0.11 deleterious(0.04) benign(0.17) TCGA-55-8092-01 12 52885386 52885386 C A KRT6A Silent p.L225L 0.36 TCGA-55-8092-01 12 53186082 53186082 G T KRT3 Missense_Mutation p.Q377K 0.25 deleterious(0) probably_damaging(0.998) TCGA-55-8092-01 12 53803152 53803152 G A SP1 Silent p.S617S 0.15 TCGA-55-8092-01 12 54369110 54369110 G A HOXC11 Silent p.V276V 0.17 TCGA-55-8092-01 12 54925582 54925582 G T NCKAP1L Missense_Mutation p.R918S 0.41 deleterious(0) probably_damaging(0.987) TCGA-55-8092-01 12 55641626 55641626 C T OR6C74 Silent p.L185L 0.23 TCGA-55-8092-01 12 56557518 56557530 TGTGGGGTCTGGA - SMARCC2 Frame_Shift_Del p.D1198Rfs*81 0.14 TCGA-55-8092-01 12 64812795 64812795 G - XPOT Frame_Shift_Del p.G138Efs*2 0.14 TCGA-55-8092-01 12 66703495 66703495 A T HELB Nonsense_Mutation p.R263* 0.19 TCGA-55-8092-01 12 6680116 6680116 T G CHD4 Silent p.P1880P 0.15 TCGA-55-8092-01 12 68707424 68707425 - A MDM1 Frame_Shift_Ins p.G537Wfs*10 0.08 TCGA-55-8092-01 12 69158622 69158622 G A SLC35E3 Silent p.K298K 0.13 TCGA-55-8092-01 12 6923510 6923510 C T CD4 Intron 0.25 TCGA-55-8092-01 12 8078467 8078467 C A SLC2A3 Silent p.V313V 0.18 TCGA-55-8092-01 12 94975691 94975691 C T TMCC3 Silent p.A234A 0.14 TCGA-55-8092-01 12 98927619 98927619 A T TMPO Silent p.T528T 0.23 TCGA-55-8092-01 12 99126216 99126216 G T APAF1 Missense_Mutation p.G1207W 0.20 deleterious(0) probably_damaging(0.998) TCGA-55-8092-01 13 110853231 110853231 G A COL4A1 Missense_Mutation p.P364S 0.13 unknown(0) TCGA-55-8092-01 13 113773177 113773177 C T F7 Missense_Mutation p.T419M 0.20 deleterious(0) probably_damaging(1) TCGA-55-8092-01 13 21382692 21382692 G A XPO4 Missense_Mutation p.H508Y 0.14 tolerated(0.19) benign(0.032) TCGA-55-8092-01 13 39585353 39585353 A G PROSER1 3'UTR 0.19 TCGA-55-8092-01 13 51855296 51855296 C A FAM124A Nonsense_Mutation p.C551* 0.13 TCGA-55-8092-01 13 52952347 52952347 C T THSD1 Silent p.R586R 0.13 TCGA-55-8092-01 13 52960255 52960255 C T THSD1 Missense_Mutation p.R363H 0.13 deleterious(0) probably_damaging(1) TCGA-55-8092-01 13 78130833 78130833 G A SCEL Missense_Mutation p.R49H 0.11 deleterious(0.05) benign(0.139) TCGA-55-8092-01 14 105175030 105175030 A G INF2 Missense_Mutation p.K637R 0.12 tolerated(0.38) unknown(0) TCGA-55-8092-01 14 105406488 105406488 G - AHNAK2 Frame_Shift_Del p.K5101Nfs*13 0.11 TCGA-55-8092-01 14 105678503 105678503 T C BRF1 Splice_Site p.X591_splice 0.12 TCGA-55-8092-01 14 106405889 106405889 G T IGHV6-1 Missense_Mutation p.P29T 0.22 deleterious(0.02) benign(0.13) TCGA-55-8092-01 14 22925720 22925720 T G TRDJ2 Missense_Mutation p.L14R 0.20 unknown(0) TCGA-55-8092-01 14 23778060 23778060 G T BCL2L2 Silent p.L156L 0.41 TCGA-55-8092-01 14 23899792 23899792 C T MYH7 Missense_Mutation p.A326T 0.40 tolerated(0.15) benign(0.075) TCGA-55-8092-01 14 31346828 31346828 A G COCH Missense_Mutation p.K45E 0.15 tolerated(1) benign(0.062) TCGA-55-8092-01 14 33291465 33291465 G A AKAP6 Missense_Mutation p.M1482I 0.26 deleterious_low_confidence(0.03) benign(0.03) TCGA-55-8092-01 14 52535585 52535585 C G NID2 Missense_Mutation p.W43S 0.13 tolerated(0.42) benign(0.003) TCGA-55-8092-01 14 64691207 64691207 A T SYNE2 Missense_Mutation p.D6804V 0.32 probably_damaging(1) TCGA-55-8092-01 14 94400945 94400945 T C ASB2 3'UTR 0.18 TCGA-55-8092-01 15 22382642 22382642 C A OR4N4 Missense_Mutation p.A57D 0.04 deleterious(0) possibly_damaging(0.883) TCGA-55-8092-01 15 22382720 22382720 T A OR4N4 Missense_Mutation p.V83E 0.06 tolerated(0.18) possibly_damaging(0.603) TCGA-55-8092-01 15 22835968 22835968 G A TUBGCP5 Missense_Mutation p.G67R 0.31 deleterious(0.01) probably_damaging(1) TCGA-55-8092-01 15 28263617 28263617 C T OCA2 Missense_Mutation p.G245R 0.19 tolerated(0.21) benign(0.003) TCGA-55-8092-01 15 33936610 33936610 C A RYR3 Missense_Mutation p.Q1219K 0.11 probably_damaging(0.991) TCGA-55-8092-01 15 34028512 34028512 A C RYR3 Missense_Mutation p.K2501Q 0.12 probably_damaging(0.993) TCGA-55-8092-01 15 48063982 48063982 G T SEMA6D Nonstop_Mutation p.*1074Yext*19 0.17 TCGA-55-8092-01 15 48512930 48512930 G C SLC12A1 Missense_Mutation p.V174L 0.09 tolerated(0.72) benign(0.002) TCGA-55-8092-01 15 48818378 48818378 A T FBN1 Missense_Mutation p.C313S 0.11 probably_damaging(0.999) TCGA-55-8092-01 15 57574736 57574736 G A TCF12 Missense_Mutation p.G691E 0.08 deleterious(0) probably_damaging(0.949) TCGA-55-8092-01 15 69320611 69320611 C T NOX5 Silent p.I77I 0.16 TCGA-55-8092-01 15 69745263 69745263 C T RPLP1 5'UTR 0.23 TCGA-55-8092-01 15 74703149 74703149 T A SEMA7A Missense_Mutation p.Q606L 0.36 tolerated(0.33) benign(0) TCGA-55-8092-01 15 75042710 75042710 G A CYP1A2 Missense_Mutation p.E211K 0.13 deleterious(0.01) benign(0.001) TCGA-55-8092-01 15 75310792 75310792 G A SCAMP5 Silent p.T143T 0.14 TCGA-55-8092-01 15 75648464 75648464 G A MAN2C1 Nonsense_Mutation p.Q1012* 0.19 TCGA-55-8092-01 15 79058083 79058083 C G ADAMTS7 Missense_Mutation p.E1390D 0.10 tolerated(0.4) benign(0.004) TCGA-55-8092-01 15 88420185 88420185 T A NTRK3 Missense_Mutation p.Y834F 0.23 deleterious(0) probably_damaging(0.997) TCGA-55-8092-01 15 89400747 89400747 C T ACAN Missense_Mutation p.S1644F 0.12 deleterious(0) possibly_damaging(0.566) TCGA-55-8092-01 16 11114086 11114086 C T CLEC16A Missense_Mutation p.S447L 0.19 tolerated(0.13) benign(0.006) TCGA-55-8092-01 16 16267179 16267179 C A ABCC6 Nonsense_Mutation p.G917* 0.09 TCGA-55-8092-01 16 18532215 18532215 C A NOMO2 Missense_Mutation p.E715D 0.15 tolerated(0.09) benign(0.004) TCGA-55-8092-01 16 18532218 18532218 G A NOMO2 Silent p.I714I 0.15 TCGA-55-8092-01 16 18823127 18823127 C A SMG1 Missense_Mutation p.G3622C 0.12 deleterious(0) probably_damaging(1) TCGA-55-8092-01 16 19661758 19661758 A C C16orf62 Silent p.R784R 0.10 TCGA-55-8092-01 16 2089996 2089996 A G NTHL1 Missense_Mutation p.C290R 0.12 deleterious(0) probably_damaging(0.997) TCGA-55-8092-01 16 24570953 24570953 G C RBBP6 Missense_Mutation p.D268H 0.09 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-8092-01 16 24582457 24582457 C T RBBP6 Missense_Mutation p.S1357L 0.09 tolerated_low_confidence(0.18) unknown(0) TCGA-55-8092-01 16 27460101 27460101 G A IL21R Missense_Mutation p.G372S 0.16 deleterious(0.02) possibly_damaging(0.697) TCGA-55-8092-01 16 2817322 2817322 G T SRRM2 Missense_Mutation p.A2265S 0.28 possibly_damaging(0.562) TCGA-55-8092-01 16 30748940 30748940 C G SRCAP Missense_Mutation p.L2527V 0.13 unknown(0) TCGA-55-8092-01 16 3115622 3115622 C G IL32 5'UTR 0.35 TCGA-55-8092-01 16 3139400 3139400 G T ZSCAN10 Missense_Mutation p.R624S 0.11 deleterious(0.05) probably_damaging(0.93) TCGA-55-8092-01 16 3644562 3644562 C T SLX4 Missense_Mutation p.M684I 0.08 deleterious(0) probably_damaging(0.998) TCGA-55-8092-01 16 49670340 49670341 - C ZNF423 Frame_Shift_Ins p.D908Gfs*10 0.27 TCGA-55-8092-01 16 49672049 49672049 G T ZNF423 Silent p.V338V 0.21 TCGA-55-8092-01 16 50733452 50733452 G T NOD2 Nonsense_Mutation p.E43* 0.14 TCGA-55-8092-01 16 53878065 53878065 A G FTO Splice_Site p.X251_splice 0.19 TCGA-55-8092-01 16 56902268 56902268 G A SLC12A3 Silent p.T163T 0.13 TCGA-55-8092-01 16 57060811 57060811 C T NLRC5 Silent p.A652A 0.26 TCGA-55-8092-01 16 61935148 61935148 T C CDH8 Missense_Mutation p.N161S 0.14 deleterious(0.01) probably_damaging(0.931) TCGA-55-8092-01 16 67213732 67213732 C A KIAA0895L Missense_Mutation p.G234C 0.13 deleterious(0) possibly_damaging(0.539) TCGA-55-8092-01 16 67709826 67709826 G A GFOD2 Silent p.F130F 0.10 TCGA-55-8092-01 16 72830781 72830781 G A ZFHX3 Missense_Mutation p.P1934S 0.16 probably_damaging(0.986) TCGA-55-8092-01 16 77325175 77325175 C T ADAMTS18 Silent p.L1130L 0.33 TCGA-55-8092-01 16 77375625 77375625 T C ADAMTS18 Silent p.E562E 0.17 TCGA-55-8092-01 16 77396129 77396129 C G ADAMTS18 Missense_Mutation p.Q363H 0.21 tolerated(1) benign(0.023) TCGA-55-8092-01 16 77396132 77396132 G A ADAMTS18 Silent p.D362D 0.21 TCGA-55-8092-01 16 78064609 78064609 C A CLEC3A Missense_Mutation p.D164E 0.15 tolerated(1) possibly_damaging(0.505) TCGA-55-8092-01 16 78064610 78064610 C G CLEC3A Missense_Mutation p.R165G 0.15 tolerated(0.23) benign(0.345) TCGA-55-8092-01 16 81095214 81095214 C A C16orf46 Missense_Mutation p.G247V 0.22 deleterious(0) benign(0.117) TCGA-55-8092-01 16 81145767 81145767 C A PKD1L2 Splice_Site 0.22 TCGA-55-8092-01 16 830602 830602 C T MSLNL Silent p.A133A 0.17 TCGA-55-8092-01 16 85952322 85952322 G A IRF8 Missense_Mutation p.G301S 0.08 deleterious(0) probably_damaging(1) TCGA-55-8092-01 16 89789568 89789568 G T ZNF276 Missense_Mutation p.G178V 0.08 tolerated(0.36) benign(0.004) TCGA-55-8092-01 16 90161603 90161603 G T TUBB8P7 RNA 0.14 TCGA-55-8092-01 17 10312460 10312460 G A MYH8 Missense_Mutation p.A640V 0.23 tolerated(0.17) benign(0.099) TCGA-55-8092-01 17 10543528 10543528 T A MYH3 Missense_Mutation p.M823L 0.24 tolerated(0.16) benign(0.305) TCGA-55-8092-01 17 10728817 10728817 C T PIRT Nonsense_Mutation p.W49* 0.33 TCGA-55-8092-01 17 26488217 26488217 C G NLK Missense_Mutation p.L226V 0.07 deleterious(0) possibly_damaging(0.731) TCGA-55-8092-01 17 33520886 33520886 G A SLC35G3 Silent p.L147L 0.30 TCGA-55-8092-01 17 34073306 34073306 C T GAS2L2 Missense_Mutation p.E404K 0.12 tolerated(0.3) benign(0.004) TCGA-55-8092-01 17 3704452 3704452 G A ITGAE 5'UTR 0.28 TCGA-55-8092-01 17 43923925 43923925 C T SPPL2C Silent p.G551G 0.19 TCGA-55-8092-01 17 45214547 45214547 G A CDC27 Silent p.I634I 0.07 TCGA-55-8092-01 17 48745000 48745000 G - ABCC3 Frame_Shift_Del p.E507Sfs*5 0.22 TCGA-55-8092-01 17 64299066 64299066 G A PRKCA Missense_Mutation p.E33K 0.15 tolerated(0.14) benign(0.014) TCGA-55-8092-01 17 7228151 7228151 G T NEURL4 Missense_Mutation p.Q594K 0.12 deleterious(0.05) possibly_damaging(0.719) TCGA-55-8092-01 17 72345425 72345425 G T KIF19 Nonsense_Mutation p.E384* 0.17 TCGA-55-8092-01 17 72368126 72368126 C A GPR142 Missense_Mutation p.A259D 0.25 deleterious(0.05) benign(0.367) TCGA-55-8092-01 17 72584744 72584744 C G CD300LD Missense_Mutation p.E95D 0.11 deleterious(0.05) benign(0.041) TCGA-55-8092-01 17 7324694 7324694 C A SPEM1 Missense_Mutation p.Q234K 0.53 tolerated(0.39) possibly_damaging(0.828) TCGA-55-8092-01 17 7578457 7578457 C A TP53 Missense_Mutation p.R158L 0.36 deleterious(0) probably_damaging(0.986) TCGA-55-8092-01 17 7798322 7798322 G A CHD3 Missense_Mutation p.D512N 0.18 possibly_damaging(0.539) TCGA-55-8092-01 17 78796041 78796041 G A RPTOR Missense_Mutation p.E311K 0.12 deleterious(0) probably_damaging(0.996) TCGA-55-8092-01 17 79244796 79244796 C A SLC38A10 Silent p.A351A 0.19 TCGA-55-8092-01 17 80010174 80010174 C T GPS1 5'UTR 0.16 TCGA-55-8092-01 17 80320402 80320402 C A TEX19 Missense_Mutation p.P126T 0.11 deleterious(0.01) probably_damaging(0.961) TCGA-55-8092-01 18 22807473 22807473 C T ZNF521 Missense_Mutation p.E137K 0.12 deleterious(0) probably_damaging(0.998) TCGA-55-8092-01 18 23895193 23895193 A T TAF4B Silent p.R611R 0.25 TCGA-55-8092-01 18 28719708 28719708 C T DSC1 Intron 0.25 TCGA-55-8092-01 18 28734754 28734754 T A DSC1 Nonsense_Mutation p.K204* 0.25 TCGA-55-8092-01 18 28993430 28993430 C T DSG4 Missense_Mutation p.P1018S 0.13 tolerated(0.09) benign(0.129) TCGA-55-8092-01 18 2951227 2951227 T A LPIN2 Missense_Mutation p.H139L 0.26 tolerated(0.32) benign(0.001) TCGA-55-8092-01 18 30554589 30554589 C A CCDC178 Silent p.V815V 0.15 TCGA-55-8092-01 18 34839100 34839100 G T CELF4 Intron 0.39 TCGA-55-8092-01 18 34854468 34854468 C A CELF4 Intron 0.17 TCGA-55-8092-01 18 43217147 43217147 G T SLC14A2 Silent p.L281L 0.24 TCGA-55-8092-01 18 50832032 50832032 A C DCC Missense_Mutation p.T666P 0.09 tolerated(0.12) benign(0.023) TCGA-55-8092-01 18 52899793 52899793 C T TCF4 Silent p.K634K 0.11 TCGA-55-8092-01 18 57134023 57134023 C A CCBE1 Silent p.R167R 0.11 TCGA-55-8092-01 18 58039136 58039136 A G MC4R Silent p.F149F 0.10 TCGA-55-8092-01 18 60999136 60999136 T A KDSR Splice_Site p.X294_splice 0.13 TCGA-55-8092-01 18 61388157 61388157 C A SERPINB11 Silent p.P237P 0.18 TCGA-55-8092-01 18 77894759 77894759 C T ADNP2 Missense_Mutation p.P488L 0.16 deleterious(0.01) probably_damaging(0.951) TCGA-55-8092-01 18 8784440 8784440 C A SOGA2 Missense_Mutation p.L444I 0.15 deleterious(0.01) benign(0.412) TCGA-55-8092-01 19 10226221 10226221 G A EIF3G Missense_Mutation p.A294V 0.19 deleterious(0.01) possibly_damaging(0.836) TCGA-55-8092-01 19 11325286 11325286 C G DOCK6 Silent p.G1382G 0.15 TCGA-55-8092-01 19 1207065 1207065 G - STK11 Frame_Shift_Del p.D53Tfs*11 0.23 TCGA-55-8092-01 19 12298301 12298301 G T ZNF136 Missense_Mutation p.G370W 0.28 deleterious(0) probably_damaging(1) TCGA-55-8092-01 19 12856460 12856460 G A ASNA1 Missense_Mutation p.D166N 0.15 deleterious(0) probably_damaging(0.999) TCGA-55-8092-01 19 1433757 1433757 A G DAZAP1 Intron 0.14 TCGA-55-8092-01 19 17612122 17612122 C T SLC27A1 Silent p.P559P 0.17 TCGA-55-8092-01 19 18888151 18888151 G A CRTC1 Missense_Mutation p.D638N 0.35 deleterious(0) possibly_damaging(0.871) TCGA-55-8092-01 19 19375646 19375646 G C TM6SF2 Missense_Mutation p.R321G 0.15 deleterious(0) probably_damaging(0.939) TCGA-55-8092-01 19 2117262 2117263 TG A AP3D1 Frame_Shift_Del p.P606Lfs*108 0.33 TCGA-55-8092-01 19 22941213 22941213 T C ZNF99 Missense_Mutation p.K500E 0.36 tolerated(0.07) probably_damaging(0.998) TCGA-55-8092-01 19 23837315 23837315 C A ZNF675 Missense_Mutation p.Q140H 0.14 tolerated(0.19) possibly_damaging(0.648) TCGA-55-8092-01 19 31040285 31040285 G T ZNF536 Silent p.R1253R 0.22 TCGA-55-8092-01 19 31769975 31769975 C T TSHZ3 Missense_Mutation p.D242N 0.20 tolerated(0.09) probably_damaging(0.999) TCGA-55-8092-01 19 36134253 36134253 G A ETV2 Missense_Mutation p.A105T 0.55 tolerated(0.14) benign(0.089) TCGA-55-8092-01 19 36497349 36497349 G C SYNE4 Silent p.P281P 0.20 TCGA-55-8092-01 19 367187 367187 G T THEG Missense_Mutation p.P264H 0.23 deleterious(0) probably_damaging(0.991) TCGA-55-8092-01 19 38874099 38874099 A G PSMD8 3'UTR 0.32 TCGA-55-8092-01 19 38939110 38939110 G T RYR1 Missense_Mutation p.A306S 0.13 possibly_damaging(0.759) TCGA-55-8092-01 19 39009873 39009873 G A RYR1 Silent p.V3346V 0.09 TCGA-55-8092-01 19 39380361 39380361 G T SIRT2 Missense_Mutation p.L134I 0.08 deleterious(0) probably_damaging(0.993) TCGA-55-8092-01 19 39897497 39897497 C T ZFP36 5'UTR 0.18 TCGA-55-8092-01 19 40408562 40408562 G T FCGBP Missense_Mutation p.S1426Y 0.24 probably_damaging(0.999) TCGA-55-8092-01 19 43236970 43236970 G T PSG3 Silent p.A225A 0.11 TCGA-55-8092-01 19 44777742 44777742 G A ZNF233 Missense_Mutation p.G310E 0.24 tolerated(0.07) benign(0.064) TCGA-55-8092-01 19 45004419 45004419 C T ZNF180 5'UTR 0.29 TCGA-55-8092-01 19 45026873 45026873 C A CEACAM20 RNA 0.12 TCGA-55-8092-01 19 47969325 47969325 G A SLC8A2 Silent p.A112A 0.29 TCGA-55-8092-01 19 49967388 49967388 C T ALDH16A1 Missense_Mutation p.P400L 0.14 tolerated(0.25) possibly_damaging(0.746) TCGA-55-8092-01 19 51129258 51129258 C T SYT3 Missense_Mutation p.G433E 0.22 deleterious(0) probably_damaging(1) TCGA-55-8092-01 19 5144015 5144015 C T KDM4B Missense_Mutation p.S863L 0.17 possibly_damaging(0.849) TCGA-55-8092-01 19 51527500 51527500 T A KLK11 Silent p.T120T 0.27 TCGA-55-8092-01 19 51768884 51768884 G T SIGLECL1 Missense_Mutation p.L95F 0.13 tolerated(0.15) possibly_damaging(0.541) TCGA-55-8092-01 19 51857544 51857544 T A ETFB Missense_Mutation p.R117W 0.41 deleterious_low_confidence(0.03) possibly_damaging(0.908) TCGA-55-8092-01 19 52115398 52115398 C A SIGLEC5 3'UTR 0.45 TCGA-55-8092-01 19 52496644 52496644 T A ZNF615 Missense_Mutation p.H573L 0.26 deleterious(0) probably_damaging(0.997) TCGA-55-8092-01 19 52619331 52619331 G C ZNF616 Missense_Mutation p.F362L 0.09 deleterious(0.02) probably_damaging(1) TCGA-55-8092-01 19 52937352 52937352 C A ZNF534 Missense_Mutation p.P54T 0.44 tolerated(0.19) benign(0) TCGA-55-8092-01 19 53086595 53086595 A T ZNF701 Missense_Mutation p.H494L 0.26 deleterious(0) benign(0.223) TCGA-55-8092-01 19 53344276 53344276 G C ZNF468 Nonsense_Mutation p.S424* 0.23 TCGA-55-8092-01 19 53344659 53344659 C T ZNF468 Silent p.E296E 0.28 TCGA-55-8092-01 19 53667757 53667757 G C ZNF665 Silent p.V662V 0.15 TCGA-55-8092-01 19 53854579 53854579 T C ZNF845 Silent p.C217C 0.16 TCGA-55-8092-01 19 54140063 54140063 C A DPRX Missense_Mutation p.L133M 0.15 deleterious(0.03) possibly_damaging(0.459) TCGA-55-8092-01 19 54598429 54598429 G T OSCAR 3'UTR 0.24 TCGA-55-8092-01 19 54802202 54802202 G T LILRA3 Missense_Mutation p.S329Y 0.41 deleterious(0.01) benign(0.349) TCGA-55-8092-01 19 55418152 55418152 T A NCR1 Missense_Mutation p.D114E 0.27 tolerated(0.83) benign(0.061) TCGA-55-8092-01 19 55493627 55493627 G T NLRP2 Missense_Mutation p.E187D 0.11 deleterious(0) benign(0.17) TCGA-55-8092-01 19 55669021 55669021 G A TNNI3 5'UTR 0.30 TCGA-55-8092-01 19 56089367 56089367 C A ZNF579 Nonsense_Mutation p.E547* 0.16 TCGA-55-8092-01 19 56973780 56973780 G T ZNF667 5'UTR 0.14 TCGA-55-8092-01 19 57176165 57176165 C A ZNF835 Silent p.G134G 0.12 TCGA-55-8092-01 19 57286465 57286465 G T ZIM2 Missense_Mutation p.P392H 0.20 deleterious(0) possibly_damaging(0.73) TCGA-55-8092-01 19 57640201 57640201 T A USP29 Missense_Mutation p.L53Q 0.23 deleterious(0) probably_damaging(0.996) TCGA-55-8092-01 19 58904809 58904809 G A RPS5 Silent p.V134V 0.28 TCGA-55-8092-01 19 6921855 6921855 G T EMR1 Missense_Mutation p.M584I 0.28 tolerated(0.1) benign(0.034) TCGA-55-8092-01 19 6921856 6921856 G T EMR1 Missense_Mutation p.A585S 0.29 tolerated(0.74) benign(0.158) TCGA-55-8092-01 19 8615069 8615069 G T MYO1F Missense_Mutation p.A359D 0.41 tolerated(0.41) benign(0.011) TCGA-55-8092-01 19 872020 872020 C T MED16 Silent p.L668L 0.21 TCGA-55-8092-01 19 9965209 9965209 G T OLFM2 Missense_Mutation p.Q340K 0.18 tolerated(0.08) possibly_damaging(0.61) TCGA-55-8092-01 19 9967500 9967500 G T OLFM2 Missense_Mutation p.P224T 0.15 deleterious(0.01) benign(0.145) TCGA-55-8092-01 1 103345257 103345257 T A COL11A1 Silent p.T1752T 0.10 TCGA-55-8092-01 1 103379246 103379246 C A COL11A1 Missense_Mutation p.G1327C 0.14 unknown(0) TCGA-55-8092-01 1 11097866 11097866 G A MASP2 Nonsense_Mutation p.Q298* 0.10 TCGA-55-8092-01 1 113242427 113242427 C T MOV10 Missense_Mutation p.P902S 0.33 deleterious(0.01) benign(0.213) TCGA-55-8092-01 1 113638531 113638531 A G LRIG2 Missense_Mutation p.K280R 0.22 deleterious(0.03) benign(0.062) TCGA-55-8092-01 1 114511194 114511194 C T HIPK1 Missense_Mutation p.P899S 0.13 deleterious(0) probably_damaging(0.984) TCGA-55-8092-01 1 114636387 114636387 G T SYT6 3'UTR 0.16 TCGA-55-8092-01 1 115489890 115489890 A T SYCP1 Missense_Mutation p.K757N 0.18 deleterious(0.01) possibly_damaging(0.688) TCGA-55-8092-01 1 118567936 118567936 G T SPAG17 Silent p.P1278P 0.37 TCGA-55-8092-01 1 120301854 120301854 A T HMGCS2 Nonsense_Mutation p.L246* 0.12 TCGA-55-8092-01 1 12884844 12884844 C G PRAMEF11 Missense_Mutation p.D423H 0.36 tolerated(0.07) benign(0.002) TCGA-55-8092-01 1 144855817 144855817 C A PDE4DIP Nonsense_Mutation p.E2246* 0.10 TCGA-55-8092-01 1 150249041 150249041 G T C1orf54 Splice_Site p.X100_splice 0.09 TCGA-55-8092-01 1 151316209 151316209 G A RFX5 Silent p.L235L 0.12 TCGA-55-8092-01 1 151826076 151826076 A T THEM5 5'UTR 0.09 TCGA-55-8092-01 1 152080655 152080655 C G TCHH Missense_Mutation p.E1680Q 0.20 unknown(0) TCGA-55-8092-01 1 152191804 152191804 T A HRNR Silent p.R767R 0.11 TCGA-55-8092-01 1 152636835 152636835 G A LCE2D Missense_Mutation p.R85Q 0.14 tolerated_low_confidence(0.39) unknown(0) TCGA-55-8092-01 1 156130745 156130745 C T SEMA4A Silent p.F245F 0.10 TCGA-55-8092-01 1 156351617 156351617 G A RHBG Silent p.A287A 0.11 TCGA-55-8092-01 1 156446948 156446948 C A MEF2D Silent p.V237V 0.09 TCGA-55-8092-01 1 156502815 156502815 C T IQGAP3 Missense_Mutation p.E1354K 0.13 tolerated(0.14) benign(0.003) TCGA-55-8092-01 1 156533589 156533589 G A IQGAP3 Silent p.A155A 0.33 TCGA-55-8092-01 1 156565024 156565024 C G GPATCH4 Missense_Mutation p.R370T 0.11 deleterious_low_confidence(0) benign(0.227) TCGA-55-8092-01 1 156642865 156642865 A G NES Missense_Mutation p.L372P 0.14 deleterious(0.02) benign(0.263) TCGA-55-8092-01 1 157062486 157062486 G T ETV3L Silent p.P347P 0.34 TCGA-55-8092-01 1 158724749 158724749 G A OR6K6 Silent p.A48A 0.09 TCGA-55-8092-01 1 160811529 160811529 G A CD244 Missense_Mutation p.P75L 0.12 tolerated(0.66) benign(0.016) TCGA-55-8092-01 1 161087976 161087976 C T NIT1 Intron 0.10 TCGA-55-8092-01 1 161495503 161495503 T C HSPA6 Missense_Mutation p.L352P 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-8092-01 1 162560177 162560177 C G UAP1 Missense_Mutation p.Q412E 0.11 tolerated(0.12) benign(0.23) TCGA-55-8092-01 1 165865517 165865517 C T UCK2 Silent p.F149F 0.10 TCGA-55-8092-01 1 167097384 167097384 C A DUSP27 Silent p.R1006R 0.45 TCGA-55-8092-01 1 169582842 169582842 C A SELP Missense_Mutation p.G191W 0.08 deleterious(0) probably_damaging(1) TCGA-55-8092-01 1 173912666 173912666 G A RC3H1 Missense_Mutation p.P1017S 0.13 tolerated_low_confidence(0.34) benign(0.026) TCGA-55-8092-01 1 175375360 175375360 G T TNR Missense_Mutation p.A164D 0.13 deleterious(0.03) benign(0.089) TCGA-55-8092-01 1 17603353 17603353 C A PADI3 Missense_Mutation p.L513M 0.34 tolerated(0.53) benign(0.175) TCGA-55-8092-01 1 176853596 176853596 G T ASTN1 Missense_Mutation p.S1035R 0.43 deleterious(0) probably_damaging(0.996) TCGA-55-8092-01 1 179090749 179090749 A C ABL2 Missense_Mutation p.V314G 0.57 deleterious(0) probably_damaging(0.999) TCGA-55-8092-01 1 179348562 179348562 G A AXDND1 Missense_Mutation p.E176K 0.10 tolerated(0.18) possibly_damaging(0.636) TCGA-55-8092-01 1 180945645 180945645 C G STX6 3'UTR 0.10 TCGA-55-8092-01 1 18149642 18149642 G T ACTL8 Missense_Mutation p.A47S 0.13 tolerated(0.07) probably_damaging(0.921) TCGA-55-8092-01 1 181620471 181620471 C A CACNA1E Intron 0.13 TCGA-55-8092-01 1 186008858 186008858 A T HMCN1 Splice_Site p.X2010_splice 0.21 TCGA-55-8092-01 1 190234183 190234183 C G BRINP3 Missense_Mutation p.E144Q 0.12 deleterious(0) possibly_damaging(0.762) TCGA-55-8092-01 1 19166286 19166286 A T TAS1R2 Missense_Mutation p.L776H 0.21 deleterious(0) probably_damaging(1) TCGA-55-8092-01 1 197390996 197390996 C A CRB1 Missense_Mutation p.P680T 0.07 deleterious(0) probably_damaging(1) TCGA-55-8092-01 1 200635097 200635097 G C DDX59 Missense_Mutation p.L258V 0.12 deleterious(0) probably_damaging(1) TCGA-55-8092-01 1 200965465 200965465 C A KIF21B Missense_Mutation p.K712N 0.11 deleterious(0) benign(0.133) TCGA-55-8092-01 1 202287310 202287310 G A LGR6 Missense_Mutation p.G627S 0.23 deleterious(0.01) probably_damaging(1) TCGA-55-8092-01 1 207039227 207039227 T C IL20 Silent p.L10L 0.29 TCGA-55-8092-01 1 207789974 207789974 C A CR1 Missense_Mutation p.P2239H 0.10 tolerated(0.08) possibly_damaging(0.839) TCGA-55-8092-01 1 207789975 207789975 C A CR1 Silent p.P2239P 0.10 TCGA-55-8092-01 1 208390490 208390490 G A PLXNA2 Missense_Mutation p.P260S 0.11 tolerated(0.09) probably_damaging(0.996) TCGA-55-8092-01 1 209789895 209789895 C A LAMB3 Missense_Mutation p.Q1101H 0.12 tolerated(0.05) possibly_damaging(0.897) TCGA-55-8092-01 1 209796440 209796440 C A LAMB3 Missense_Mutation p.G815C 0.10 deleterious(0) probably_damaging(0.968) TCGA-55-8092-01 1 21050668 21050668 C T SH2D5 Missense_Mutation p.R236H 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-8092-01 1 21103111 21103111 G A HP1BP3 Missense_Mutation p.S110F 0.10 deleterious(0.01) benign(0.085) TCGA-55-8092-01 1 214819977 214819977 C T CENPF Missense_Mutation p.A2355V 0.05 benign(0.002) TCGA-55-8092-01 1 216019257 216019257 C A USH2A Missense_Mutation p.K2988N 0.06 benign(0.002) TCGA-55-8092-01 1 216219863 216219863 T G USH2A Missense_Mutation p.K2079Q 0.14 benign(0.01) TCGA-55-8092-01 1 216420199 216420199 G A USH2A Missense_Mutation p.P846L 0.09 possibly_damaging(0.521) TCGA-55-8092-01 1 220101698 220101698 C A SLC30A10 Missense_Mutation p.G29C 0.09 deleterious(0) probably_damaging(0.998) TCGA-55-8092-01 1 223940636 223940636 G T CAPN2 Silent p.A371A 0.10 TCGA-55-8092-01 1 22456245 22456245 C T WNT4 Silent p.R59R 0.17 TCGA-55-8092-01 1 228346831 228346831 G C GJC2 3'UTR 0.11 TCGA-55-8092-01 1 228492215 228492215 G A OBSCN Silent p.E4738E 0.10 TCGA-55-8092-01 1 228509303 228509303 G A OBSCN Missense_Mutation p.V5878M 0.07 probably_damaging(0.988) TCGA-55-8092-01 1 228566522 228566522 C G OBSCN 3'UTR 0.18 TCGA-55-8092-01 1 228612627 228612627 C G HIST3H3 Missense_Mutation p.E134Q 0.39 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-55-8092-01 1 228879188 228879188 G T RHOU Nonsense_Mutation p.G160* 0.12 TCGA-55-8092-01 1 23110993 23110993 C T EPHB2 Missense_Mutation p.R79W 0.09 tolerated(0.07) benign(0.005) TCGA-55-8092-01 1 23240353 23240353 G A EPHB2 3'UTR 0.33 TCGA-55-8092-01 1 233393854 233393854 G A PCNXL2 Missense_Mutation p.S585F 0.06 deleterious(0) benign(0.06) TCGA-55-8092-01 1 237711755 237711755 G T RYR2 Missense_Mutation p.K977N 0.11 possibly_damaging(0.831) TCGA-55-8092-01 1 237777744 237777744 T C RYR2 Silent p.S1772S 0.12 TCGA-55-8092-01 1 237947932 237947932 G T RYR2 Missense_Mutation p.R4307L 0.39 benign(0.052) TCGA-55-8092-01 1 237955551 237955551 C A RYR2 Silent p.P4570P 0.45 TCGA-55-8092-01 1 240070926 240070926 C A CHRM3 Missense_Mutation p.P59T 0.10 deleterious(0.03) benign(0.109) TCGA-55-8092-01 1 240370849 240370849 C A FMN2 Missense_Mutation p.P913T 0.12 unknown(0) TCGA-55-8092-01 1 240371408 240371408 C T FMN2 Missense_Mutation p.P1099L 0.11 unknown(0) TCGA-55-8092-01 1 247320487 247320487 C G ZNF124 Missense_Mutation p.G84A 0.18 tolerated(0.06) benign(0.001) TCGA-55-8092-01 1 247695610 247695610 G A OR2C3 Silent p.P68P 0.10 TCGA-55-8092-01 1 247737561 247737561 C T GCSAML Silent p.L95L 0.10 TCGA-55-8092-01 1 247875304 247875304 A T OR6F1 Missense_Mutation p.Y252N 0.09 deleterious(0) probably_damaging(0.996) TCGA-55-8092-01 1 248202043 248202043 C A OR2L2 Missense_Mutation p.H158Q 0.13 tolerated(0.2) possibly_damaging(0.777) TCGA-55-8092-01 1 248366867 248366867 C A OR2M3 Missense_Mutation p.F166L 0.14 tolerated(0.12) possibly_damaging(0.533) TCGA-55-8092-01 1 248437011 248437011 A G OR2T33 Missense_Mutation p.S36P 0.38 deleterious(0) probably_damaging(0.939) TCGA-55-8092-01 1 248569430 248569430 C A OR2T1 Silent p.I45I 0.19 TCGA-55-8092-01 1 24996713 24996713 C T SRRM1 Silent p.S769S 0.15 TCGA-55-8092-01 1 31188925 31188925 G C MATN1 Silent p.S346S 0.18 TCGA-55-8092-01 1 32222290 32222290 C A BAI2 Missense_Mutation p.G50W 0.18 deleterious(0) probably_damaging(1) TCGA-55-8092-01 1 34329881 34329881 A T HMGB4 Missense_Mutation p.Q30L 0.14 deleterious(0) probably_damaging(0.999) TCGA-55-8092-01 1 35485166 35485166 T C ZMYM6 Silent p.A72A 0.19 TCGA-55-8092-01 1 40961689 40961689 T C ZFP69 Silent p.H513H 0.23 TCGA-55-8092-01 1 46972693 46972693 A G DMBX1 Missense_Mutation p.Y4C 0.10 deleterious(0) probably_damaging(0.998) TCGA-55-8092-01 1 47653003 47653003 C A PDZK1IP1 Missense_Mutation p.C55F 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-8092-01 1 48690397 48690397 C T SLC5A9 Missense_Mutation p.S55L 0.15 deleterious(0) possibly_damaging(0.734) TCGA-55-8092-01 1 48877206 48877206 C A SPATA6 Missense_Mutation p.G112V 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-55-8092-01 1 63052236 63052236 C T DOCK7 Missense_Mutation p.R581K 0.11 deleterious(0.04) possibly_damaging(0.868) TCGA-55-8092-01 1 65858334 65858334 A C DNAJC6 Silent p.A563A 0.15 TCGA-55-8092-01 1 67155926 67155926 C A SGIP1 Silent p.P499P 0.12 TCGA-55-8092-01 1 67155965 67155965 C A SGIP1 Silent p.T512T 0.12 TCGA-55-8092-01 1 67243148 67243148 G A TCTEX1D1 3'UTR 0.18 TCGA-55-8092-01 1 71477827 71477827 C G PTGER3 Intron 0.14 TCGA-55-8092-01 1 74715219 74715219 A G FPGT-TNNI3K Missense_Mutation p.I190V 0.17 tolerated(0.54) benign(0.003) TCGA-55-8092-01 1 75037804 75037804 G A C1orf173 Missense_Mutation p.S1197F 0.14 tolerated(0.22) benign(0.034) TCGA-55-8092-01 1 84864217 84864217 G T DNASE2B 5'UTR 0.20 TCGA-55-8092-01 1 89448393 89448393 C A RBMXL1 Missense_Mutation p.G373C 0.17 tolerated(0.06) unknown(0) TCGA-55-8092-01 1 9075181 9075181 C A SLC2A7 Missense_Mutation p.R237L 0.40 tolerated(0.06) benign(0.294) TCGA-55-8092-01 1 94649796 94649796 G A ARHGAP29 Nonsense_Mutation p.Q720* 0.14 TCGA-55-8092-01 1 99771889 99771889 G A LPPR4 Missense_Mutation p.E539K 0.31 deleterious(0) probably_damaging(0.997) TCGA-55-8092-01 20 10653446 10653446 C A JAG1 Missense_Mutation p.G97V 0.14 deleterious(0) possibly_damaging(0.745) TCGA-55-8092-01 20 13279806 13279806 C A ISM1 Silent p.A365A 0.12 TCGA-55-8092-01 20 21492827 21492827 C A NKX2-2 Missense_Mutation p.A186S 0.38 tolerated(0.07) probably_damaging(0.921) TCGA-55-8092-01 20 30510853 30510853 G C TTLL9 Missense_Mutation p.G221R 0.11 deleterious(0) probably_damaging(0.965) TCGA-55-8092-01 20 31024197 31024197 G A ASXL1 Missense_Mutation p.E1228K 0.15 tolerated(0.08) benign(0.219) TCGA-55-8092-01 20 3128351 3128351 T A FASTKD5 Missense_Mutation p.S456C 0.34 deleterious(0.01) possibly_damaging(0.708) TCGA-55-8092-01 20 33298102 33298102 C T TP53INP2 Silent p.F218F 0.17 TCGA-55-8092-01 20 33875411 33875411 G C FAM83C Missense_Mutation p.Q391E 0.15 tolerated_low_confidence(0.12) benign(0.263) TCGA-55-8092-01 20 34809854 34809854 C T EPB41L1 Silent p.V836V 0.13 TCGA-55-8092-01 20 35060185 35060185 C A DLGAP4 Missense_Mutation p.P22H 0.16 deleterious(0) possibly_damaging(0.861) TCGA-55-8092-01 20 44049302 44049302 C T PIGT Silent p.I334I 0.10 TCGA-55-8092-01 20 44582325 44582325 C T ZNF335 Intron 0.09 TCGA-55-8092-01 20 44828147 44828147 C A CDH22 Silent p.A446A 0.09 TCGA-55-8092-01 20 44980768 44980768 G A SLC35C2 Silent p.A253A 0.10 TCGA-55-8092-01 20 46313322 46313322 C A SULF2 Silent p.T247T 0.23 TCGA-55-8092-01 20 47292802 47292802 G T PREX1 Missense_Mutation p.R532S 0.23 deleterious(0) possibly_damaging(0.813) TCGA-55-8092-01 20 47888227 47888227 T C ZNFX1 Missense_Mutation p.N41S 0.09 tolerated_low_confidence(0.48) benign(0.001) TCGA-55-8092-01 20 49574937 49574937 G A DPM1 Missense_Mutation p.L42F 0.24 tolerated(0.13) benign(0.128) TCGA-55-8092-01 20 49626733 49626733 G A KCNG1 Missense_Mutation p.P48L 0.26 deleterious(0.04) benign(0.124) TCGA-55-8092-01 20 49626762 49626762 C T KCNG1 Silent p.A38A 0.25 TCGA-55-8092-01 20 55111383 55111383 T A FAM209B Silent p.G135G 0.10 TCGA-55-8092-01 20 60861642 60861642 G A OSBPL2 Missense_Mutation p.E334K 0.09 tolerated(0.76) benign(0.063) TCGA-55-8092-01 20 61485407 61485407 C T TCFL5 Silent p.L447L 0.10 TCGA-55-8092-01 20 61511468 61511468 C A DIDO1 Missense_Mutation p.G1947V 0.23 probably_damaging(0.993) TCGA-55-8092-01 20 61526418 61526418 C G DIDO1 Missense_Mutation p.E772Q 0.11 probably_damaging(0.999) TCGA-55-8092-01 20 62839108 62839108 G A MYT1 Missense_Mutation p.A187T 0.20 benign(0.013) TCGA-55-8092-01 21 10862986 10862986 C T IGHV1OR21-1 Silent p.S94S 0.07 TCGA-55-8092-01 21 28305242 28305242 C A ADAMTS5 Missense_Mutation p.R604L 0.11 deleterious(0.02) probably_damaging(0.939) TCGA-55-8092-01 21 28315846 28315846 G T ADAMTS5 Missense_Mutation p.H420N 0.20 deleterious(0) probably_damaging(0.999) TCGA-55-8092-01 21 30380095 30380095 C A RWDD2B Nonsense_Mutation p.E238* 0.20 TCGA-55-8092-01 21 36079667 36079667 G T CLIC6 Silent p.V488V 0.15 TCGA-55-8092-01 21 43411535 43411535 T A ZBTB21 Silent p.A890A 0.12 TCGA-55-8092-01 21 45152394 45152394 G A PDXK Intron 0.15 TCGA-55-8092-01 21 46642146 46642146 G T ADARB1 3'UTR 0.17 TCGA-55-8092-01 22 18305787 18305787 G A MICAL3 Missense_Mutation p.S1078L 0.39 benign(0.049) TCGA-55-8092-01 22 19382003 19382003 G A HIRA Silent p.L228L 0.04 TCGA-55-8092-01 22 21066863 21066863 G T PI4KA Silent p.R1905R 0.17 TCGA-55-8092-01 22 21335324 21335324 C T AIFM3 3'UTR 0.06 TCGA-55-8092-01 22 21380781 21380781 G A P2RX6 Missense_Mutation p.E401K 0.17 tolerated(0.57) benign(0) TCGA-55-8092-01 22 29957549 29957549 C A NIPSNAP1 Missense_Mutation p.E175D 0.32 tolerated(0.15) benign(0.008) TCGA-55-8092-01 22 32811906 32811906 A G BPIFC Missense_Mutation p.L466P 0.32 tolerated(0.23) possibly_damaging(0.903) TCGA-55-8092-01 22 33255251 33255251 C T TIMP3 Missense_Mutation p.P175S 0.46 tolerated(0.8) benign(0.005) TCGA-55-8092-01 22 37266571 37266571 C T NCF4 Missense_Mutation p.R153C 0.36 deleterious(0.02) possibly_damaging(0.719) TCGA-55-8092-01 22 38201497 38201497 G A H1F0 5'UTR 0.30 TCGA-55-8092-01 22 50659281 50659281 G A TUBGCP6 Silent p.I1169I 0.14 TCGA-55-8092-01 2 106761740 106761740 G A UXS1 Silent p.F126F 0.22 TCGA-55-8092-01 2 112766012 112766012 C A MERTK Nonsense_Mutation p.C640* 0.21 TCGA-55-8092-01 2 113330310 113330310 C T POLR1B Missense_Mutation p.T749I 0.41 deleterious(0) probably_damaging(0.993) TCGA-55-8092-01 2 116539944 116539944 G - DPP10 Frame_Shift_Del p.V505Sfs*21 0.11 TCGA-55-8092-01 2 125204376 125204376 G T CNTNAP5 Silent p.L260L 0.38 TCGA-55-8092-01 2 130898744 130898744 G C CCDC74B Missense_Mutation p.Q224E 0.13 tolerated(0.14) possibly_damaging(0.481) TCGA-55-8092-01 2 130910655 130910655 G A SMPD4 Silent p.V744V 0.13 TCGA-55-8092-01 2 132257844 132257844 G C AC093838.4 RNA 0.33 TCGA-55-8092-01 2 142004848 142004848 C A LRP1B Missense_Mutation p.C180F 0.09 possibly_damaging(0.639) TCGA-55-8092-01 2 152954856 152954856 G A CACNB4 Silent p.F45F 0.15 TCGA-55-8092-01 2 167129194 167129194 C A SCN9A Missense_Mutation p.R1011S 0.15 tolerated(0.47) benign(0.005) TCGA-55-8092-01 2 167129195 167129195 C A SCN9A Missense_Mutation p.R1011M 0.15 tolerated(0.06) benign(0.357) TCGA-55-8092-01 2 168106607 168106607 A G XIRP2 Missense_Mutation p.K2902R 0.15 benign(0.125) TCGA-55-8092-01 2 168114878 168114878 C G XIRP2 3'UTR 0.35 TCGA-55-8092-01 2 169758994 169758994 A C G6PC2 Missense_Mutation p.E86D 0.20 tolerated(0.22) probably_damaging(0.959) TCGA-55-8092-01 2 170077036 170077036 G A LRP2 Missense_Mutation p.T1859I 0.16 benign(0.213) TCGA-55-8092-01 2 178416760 178416760 G A TTC30B Silent p.V244V 0.12 TCGA-55-8092-01 2 179431615 179431615 C T TTN Missense_Mutation p.G26415E 0.19 TCGA-55-8092-01 2 179439073 179439073 C T TTN Missense_Mutation p.G23929E 0.32 TCGA-55-8092-01 2 179584160 179584160 G A TTN Missense_Mutation p.S7986F 0.41 TCGA-55-8092-01 2 179588708 179588708 G C TTN Missense_Mutation p.T7093R 0.47 TCGA-55-8092-01 2 1842939 1842939 C A MYT1L Missense_Mutation p.S1019I 0.17 deleterious(0.01) probably_damaging(0.988) TCGA-55-8092-01 2 187466749 187466749 C T ITGAV Missense_Mutation p.R63W 0.11 deleterious(0.02) possibly_damaging(0.908) TCGA-55-8092-01 2 196718096 196718096 G T DNAH7 Missense_Mutation p.L2918I 0.16 deleterious(0) probably_damaging(0.973) TCGA-55-8092-01 2 207508987 207508987 G T AC010731.4 RNA 0.22 TCGA-55-8092-01 2 209007452 209007452 C A CRYGB Silent p.L146L 0.19 TCGA-55-8092-01 2 21239511 21239511 C A APOB Missense_Mutation p.Q1044H 0.17 benign(0.018) TCGA-55-8092-01 2 219855630 219855630 C A CRYBA2 Silent p.L130L 0.12 TCGA-55-8092-01 2 220326736 220326736 G A SPEG Missense_Mutation p.R858H 0.18 benign(0.001) TCGA-55-8092-01 2 220337737 220337737 A G SPEG Missense_Mutation p.I1356V 0.16 benign(0.001) TCGA-55-8092-01 2 224847403 224847403 A G SERPINE2 Missense_Mutation p.I339T 0.50 deleterious(0) probably_damaging(0.988) TCGA-55-8092-01 2 234622322 234622322 G T UGT1A5 Missense_Mutation p.A229S 0.13 tolerated(1) benign(0.008) TCGA-55-8092-01 2 238243417 238243417 G A COL6A3 Silent p.A3027A 0.13 TCGA-55-8092-01 2 239025609 239025609 G C ESPNL Silent p.A307A 0.15 TCGA-55-8092-01 2 241700092 241700092 C G KIF1A Missense_Mutation p.E812Q 0.32 tolerated(0.12) possibly_damaging(0.697) TCGA-55-8092-01 2 242423696 242423696 G A FARP2 Missense_Mutation p.G791R 0.27 tolerated(0.1) probably_damaging(0.965) TCGA-55-8092-01 2 26624938 26624938 C T DRC1 Silent p.V27V 0.10 TCGA-55-8092-01 2 27353440 27353440 C T ABHD1 Missense_Mutation p.A349V 0.12 deleterious(0.04) probably_damaging(1) TCGA-55-8092-01 2 33572544 33572544 A T LTBP1 Missense_Mutation p.M1323L 0.12 tolerated(0.08) probably_damaging(0.928) TCGA-55-8092-01 2 33585729 33585729 G T LTBP1 Missense_Mutation p.A1356S 0.32 tolerated(0.24) possibly_damaging(0.73) TCGA-55-8092-01 2 33809828 33809828 T A FAM98A 3'UTR 0.14 TCGA-55-8092-01 2 37439112 37439112 C T CEBPZ Missense_Mutation p.E892K 0.25 tolerated(0.2) benign(0.097) TCGA-55-8092-01 2 45169228 45169228 C A SIX3 5'UTR 0.16 TCGA-55-8092-01 2 46739523 46739523 C G ATP6V1E2 Missense_Mutation p.E110Q 0.39 tolerated(0.52) benign(0.009) TCGA-55-8092-01 2 69350199 69350199 A G ANTXR1 Missense_Mutation p.I285V 0.30 tolerated(1) benign(0.002) TCGA-55-8092-01 2 70188227 70188227 G C ASPRV1 Silent p.L198L 0.16 TCGA-55-8092-01 2 79363950 79363950 C A REG1P RNA 0.22 TCGA-55-8092-01 2 80085281 80085281 G A CTNNA2 Missense_Mutation p.M147I 0.12 tolerated(0.31) benign(0.059) TCGA-55-8092-01 2 80529805 80529805 G A LRRTM1 Silent p.N380N 0.12 TCGA-55-8092-01 2 80835381 80835381 A C CTNNA2 Missense_Mutation p.N790H 0.43 deleterious(0) probably_damaging(0.94) TCGA-55-8092-01 2 90154133 90154133 A T IGKV3D-15 Missense_Mutation p.R74W 0.15 deleterious(0.03) probably_damaging(0.991) TCGA-55-8092-01 2 90212091 90212091 C A IGKV3D-11 Silent p.G61G 0.42 TCGA-55-8092-01 2 95943294 95943294 C G PROM2 Missense_Mutation p.L319V 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-55-8092-01 3 112358039 112358039 C T CCDC80 Silent p.L238L 0.16 TCGA-55-8092-01 3 113955274 113955274 G A ZNF80 Silent p.P216P 0.35 TCGA-55-8092-01 3 119886257 119886257 T A GPR156 Missense_Mutation p.R689S 0.14 tolerated(0.7) benign(0.003) TCGA-55-8092-01 3 122880819 122880819 G A PDIA5 3'UTR 0.29 TCGA-55-8092-01 3 125725351 125725351 C T SLC41A3 Missense_Mutation p.G475R 0.15 deleterious_low_confidence(0) benign(0.001) TCGA-55-8092-01 3 128127045 128127045 C T EEFSEC Silent p.S578S 0.06 TCGA-55-8092-01 3 128127091 128127091 C T EEFSEC Nonsense_Mutation p.Q594* 0.08 TCGA-55-8092-01 3 128127107 128127107 C T EEFSEC 3'UTR 0.07 TCGA-55-8092-01 3 134670794 134670794 C A EPHB1 Silent p.P235P 0.33 TCGA-55-8092-01 3 14193877 14193877 C A XPC Silent p.L691L 0.07 TCGA-55-8092-01 3 142739511 142739511 G A U2SURP Missense_Mutation p.D237N 0.41 tolerated(0.36) benign(0.035) TCGA-55-8092-01 3 142754944 142754944 G A U2SURP Missense_Mutation p.E688K 0.13 tolerated(0.13) benign(0.022) TCGA-55-8092-01 3 147128529 147128529 C T ZIC1 Silent p.A210A 0.29 TCGA-55-8092-01 3 150690371 150690371 G A CLRN1 Missense_Mutation p.T42M 0.09 deleterious(0) probably_damaging(1) TCGA-55-8092-01 3 167189533 167189533 T G SERPINI2 Silent p.A30A 0.08 TCGA-55-8092-01 3 167507043 167507043 G A SERPINI1 Missense_Mutation p.D43N 0.10 tolerated(0.6) benign(0.439) TCGA-55-8092-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.11 deleterious(0.04) probably_damaging(0.96) TCGA-55-8092-01 3 180381752 180381752 C T CCDC39 Missense_Mutation p.R38K 0.19 tolerated(1) benign(0.001) TCGA-55-8092-01 3 192635661 192635661 G T MB21D2 5'UTR 0.29 TCGA-55-8092-01 3 58381406 58381406 C T PXK Silent p.L248L 0.12 TCGA-55-8092-01 3 62317067 62317067 C G C3orf14 Missense_Mutation p.S82C 0.34 deleterious(0.01) probably_damaging(0.935) TCGA-55-8092-01 3 64532515 64532515 G T ADAMTS9 Silent p.G1661G 0.19 TCGA-55-8092-01 3 77526571 77526571 G A ROBO2 Missense_Mutation p.R148Q 0.34 deleterious(0.02) benign(0.277) TCGA-55-8092-01 3 78667098 78667098 A G ROBO1 Silent p.D1323D 0.07 TCGA-55-8092-01 3 85984922 85984922 C A CADM2 Missense_Mutation p.P229T 0.35 deleterious(0) probably_damaging(0.995) TCGA-55-8092-01 4 103950001 103950001 C T SLC9B2 Missense_Mutation p.R432Q 0.19 deleterious(0) probably_damaging(0.988) TCGA-55-8092-01 4 118005684 118005684 C A TRAM1L1 Missense_Mutation p.G289V 0.41 deleterious(0.01) possibly_damaging(0.739) TCGA-55-8092-01 4 118005685 118005685 C A TRAM1L1 Nonsense_Mutation p.G289* 0.41 TCGA-55-8092-01 4 138442728 138442728 G T PCDH18 Missense_Mutation p.P955T 0.17 tolerated(0.07) benign(0.021) TCGA-55-8092-01 4 186570747 186570747 G A SORBS2 Missense_Mutation p.P248L 0.16 deleterious(0) probably_damaging(1) TCGA-55-8092-01 4 2306521 2306521 T A ZFYVE28 Missense_Mutation p.T516S 0.25 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-55-8092-01 4 30726212 30726212 C - PCDH7 Frame_Shift_Del p.S1056Rfs*8 0.09 TCGA-55-8092-01 4 3107098 3107098 G T HTT Silent p.R181R 0.11 TCGA-55-8092-01 4 3230722 3230722 G A HTT Missense_Mutation p.E2699K 0.25 benign(0.271) TCGA-55-8092-01 4 36230982 36230982 C A ARAP2 Missense_Mutation p.D43Y 0.37 deleterious(0) benign(0.292) TCGA-55-8092-01 4 38800294 38800294 C A TLR1 Silent p.S53S 0.17 TCGA-55-8092-01 4 4317667 4317667 G T ZBTB49 Missense_Mutation p.G531W 0.23 deleterious(0) probably_damaging(1) TCGA-55-8092-01 4 4411334 4411334 T G NSG1 Missense_Mutation p.L94R 0.13 deleterious(0) probably_damaging(1) TCGA-55-8092-01 4 46099341 46099341 C A GABRG1 Missense_Mutation p.D44Y 0.10 tolerated(0.12) benign(0.004) TCGA-55-8092-01 4 47408889 47408889 C A GABRB1 Missense_Mutation p.S342R 0.10 tolerated(0.47) benign(0.002) TCGA-55-8092-01 4 48636409 48636409 C G FRYL Missense_Mutation p.D7H 0.11 deleterious(0) probably_damaging(0.999) TCGA-55-8092-01 4 5170040 5170040 G A STK32B Silent p.Q41Q 0.08 TCGA-55-8092-01 4 5564467 5564467 T A EVC2 3'UTR 0.25 TCGA-55-8092-01 4 57182033 57182033 T A KIAA1211 Missense_Mutation p.C789S 0.12 deleterious(0) benign(0.291) TCGA-55-8092-01 4 57514834 57514834 G A HOPX 3'UTR 0.14 TCGA-55-8092-01 4 5827304 5827304 G A CRMP1 Missense_Mutation p.P629L 0.30 deleterious(0) probably_damaging(0.999) TCGA-55-8092-01 4 70504865 70504865 C A UGT2A2 Missense_Mutation p.G165V 0.13 deleterious(0) probably_damaging(0.954) TCGA-55-8092-01 4 70896505 70896505 G T HTN3 Missense_Mutation p.M16I 0.33 deleterious_low_confidence(0) benign(0.216) TCGA-55-8092-01 4 71275205 71275205 G A PROL1 Missense_Mutation p.D54N 0.26 tolerated_low_confidence(0.32) benign(0.001) TCGA-55-8092-01 4 79387517 79387517 C G FRAS1 Silent p.L2395L 0.23 TCGA-55-8092-01 4 79399083 79399083 C A FRAS1 Missense_Mutation p.L2656M 0.09 probably_damaging(0.933) TCGA-55-8092-01 4 84518669 84518669 G T AGPAT9 Splice_Site p.X332_splice 0.40 TCGA-55-8092-01 4 96762234 96762234 G T PDHA2 Missense_Mutation p.K311N 0.41 tolerated(0.12) possibly_damaging(0.905) TCGA-55-8092-01 5 13753546 13753546 T C DNAH5 Silent p.P3556P 0.15 TCGA-55-8092-01 5 140182025 140182025 C A PCDHA3 Missense_Mutation p.R415S 0.15 deleterious_low_confidence(0.01) probably_damaging(0.965) TCGA-55-8092-01 5 140183114 140183114 C T PCDHA3 Missense_Mutation p.P778S 0.32 deleterious_low_confidence(0.03) benign(0.002) TCGA-55-8092-01 5 140229882 140229882 C T PCDHA9 Missense_Mutation p.S601L 0.16 deleterious_low_confidence(0) benign(0.343) TCGA-55-8092-01 5 140249728 140249728 C T PCDHA11 Missense_Mutation p.P347L 0.32 deleterious_low_confidence(0.02) probably_damaging(0.978) TCGA-55-8092-01 5 140553338 140553338 G A PCDHB7 Missense_Mutation p.D308N 0.16 tolerated_low_confidence(0.08) benign(0.289) TCGA-55-8092-01 5 140736510 140736510 C A PCDHGA4 Silent p.S581S 0.16 TCGA-55-8092-01 5 140740628 140740628 T A PCDHGB2 Missense_Mutation p.F309Y 0.31 tolerated(0.31) possibly_damaging(0.651) TCGA-55-8092-01 5 140750492 140750492 C A PCDHGB3 Missense_Mutation p.H177Q 0.28 deleterious(0.01) probably_damaging(0.959) TCGA-55-8092-01 5 140755469 140755469 C A PCDHGA6 Missense_Mutation p.R607S 0.15 deleterious_low_confidence(0) benign(0.235) TCGA-55-8092-01 5 140773810 140773810 A T PCDHGA8 Missense_Mutation p.H477L 0.29 tolerated_low_confidence(0.21) benign(0.016) TCGA-55-8092-01 5 140794527 140794527 G T PCDHGA10 Silent p.V595V 0.12 TCGA-55-8092-01 5 141023943 141023943 C T FCHSD1 Missense_Mutation p.E569K 0.15 deleterious(0) probably_damaging(1) TCGA-55-8092-01 5 148406361 148406361 A G SH3TC2 Intron 0.17 TCGA-55-8092-01 5 148996182 148996182 A T ARHGEF37 Missense_Mutation p.R171W 0.33 deleterious(0) probably_damaging(1) TCGA-55-8092-01 5 150275110 150275111 AG T ZNF300 Frame_Shift_Del p.L580Mfs*29 0.11 TCGA-55-8092-01 5 151771946 151771946 G T NMUR2 Missense_Mutation p.Q352K 0.26 tolerated(0.71) benign(0.002) TCGA-55-8092-01 5 151784186 151784186 G T NMUR2 Silent p.A163A 0.33 TCGA-55-8092-01 5 153432490 153432490 G T MFAP3 Missense_Mutation p.W102C 0.18 deleterious(0) probably_damaging(1) TCGA-55-8092-01 5 156566358 156566358 C A MED7 Missense_Mutation p.G29C 0.23 deleterious(0.02) probably_damaging(0.995) TCGA-55-8092-01 5 156920071 156920071 C A ADAM19 Silent p.R606R 0.16 TCGA-55-8092-01 5 161112949 161112949 G C GABRA6 5'UTR 0.19 TCGA-55-8092-01 5 167643928 167643928 G T TENM2 Splice_Site p.X1411_splice 0.28 TCGA-55-8092-01 5 168310311 168310311 G T SLIT3 Silent p.I148I 0.14 TCGA-55-8092-01 5 176002325 176002325 C A CDHR2 Silent p.S222S 0.16 TCGA-55-8092-01 5 176562359 176562359 G T NSD1 Missense_Mutation p.E85D 0.39 tolerated_low_confidence(0.21) probably_damaging(0.97) TCGA-55-8092-01 5 177466387 177466387 G A FAM153C Splice_Site p.X37_splice 0.05 TCGA-55-8092-01 5 180377302 180377302 T A BTNL8 Missense_Mutation p.F421I 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-8092-01 5 33630903 33630903 A G ADAMTS12 Silent p.C668C 0.33 TCGA-55-8092-01 5 43245833 43245833 C A NIM1K 5'UTR 0.21 TCGA-55-8092-01 5 60183312 60183312 C A ERCC8 Silent p.L359L 0.19 TCGA-55-8092-01 5 66480270 66480270 T C CD180 Missense_Mutation p.Q134R 0.16 deleterious(0.03) probably_damaging(0.992) TCGA-55-8092-01 5 71492093 71492093 C A MAP1B Missense_Mutation p.P971T 0.20 benign(0.01) TCGA-55-8092-01 5 71495810 71495810 C A MAP1B Missense_Mutation p.P2210T 0.30 probably_damaging(1) TCGA-55-8092-01 5 72285274 72285274 A T FCHO2 Missense_Mutation p.Y49F 0.29 deleterious(0) probably_damaging(0.931) TCGA-55-8092-01 5 79929790 79929790 G A DHFR Missense_Mutation p.H131Y 0.24 tolerated(1) benign(0.008) TCGA-55-8092-01 5 80074609 80074609 G T MSH3 Nonsense_Mutation p.E797* 0.14 TCGA-55-8092-01 5 89986689 89986689 A G GPR98 Missense_Mutation p.N2261S 0.12 possibly_damaging(0.636) TCGA-55-8092-01 5 96215603 96215603 G A ERAP2 Missense_Mutation p.V72M 0.18 tolerated(0.24) benign(0.02) TCGA-55-8092-01 6 107076856 107076856 C T RTN4IP1 Missense_Mutation p.C14Y 0.37 tolerated_low_confidence(0.13) benign(0) TCGA-55-8092-01 6 129807677 129807677 C A LAMA2 Missense_Mutation p.A2603E 0.30 tolerated(0.24) benign(0.063) TCGA-55-8092-01 6 130762083 130762083 G A TMEM200A Silent p.T172T 0.06 TCGA-55-8092-01 6 151917628 151917628 G T CCDC170 Silent p.V542V 0.34 TCGA-55-8092-01 6 151917629 151917629 G T CCDC170 Nonsense_Mutation p.E543* 0.34 TCGA-55-8092-01 6 161128761 161128761 A T PLG Missense_Mutation p.Q72L 0.17 deleterious(0) benign(0.142) TCGA-55-8092-01 6 26124759 26124759 G A HIST1H2AC Missense_Mutation p.R100Q 0.23 deleterious_low_confidence(0.04) benign(0.006) TCGA-55-8092-01 6 29455370 29455370 C G MAS1L Missense_Mutation p.A104P 0.21 tolerated(0.16) benign(0.009) TCGA-55-8092-01 6 30656436 30656436 C T NRM 3'UTR 0.15 TCGA-55-8092-01 6 31975626 31975626 G T AL645922.1 5'Flank 0.17 TCGA-55-8092-01 6 38838183 38838183 G A DNAH8 Missense_Mutation p.E2062K 0.23 probably_damaging(0.945) TCGA-55-8092-01 6 4077607 4077607 C A FAM217A Silent p.V14V 0.21 TCGA-55-8092-01 6 41126668 41126668 G T TREM2 Missense_Mutation p.P207T 0.29 tolerated(0.51) benign(0.003) TCGA-55-8092-01 6 42153463 42153463 C G GUCA1B Missense_Mutation p.E144Q 0.52 tolerated(0.25) benign(0.055) TCGA-55-8092-01 6 43305982 43305982 C T ZNF318 Silent p.E1918E 0.32 TCGA-55-8092-01 6 52619849 52619849 A T GSTA2 Missense_Mutation p.V55E 0.36 deleterious(0) probably_damaging(0.946) TCGA-55-8092-01 6 56047368 56047368 G A COL21A1 Nonsense_Mutation p.Q17* 0.26 TCGA-55-8092-01 6 80881045 80881045 C T BCKDHB Missense_Mutation p.S227L 0.18 deleterious(0) probably_damaging(0.982) TCGA-55-8092-01 6 86324692 86324692 C T SYNCRIP Missense_Mutation p.G552S 0.28 deleterious_low_confidence(0.01) unknown(0) TCGA-55-8092-01 6 87725788 87725788 G C HTR1E Missense_Mutation p.D246H 0.15 tolerated(0.12) possibly_damaging(0.897) TCGA-55-8092-01 6 90089903 90089903 C G RRAGD Missense_Mutation p.E210Q 0.28 deleterious(0.05) benign(0.015) TCGA-55-8092-01 6 90605169 90605169 C A GJA10 Missense_Mutation p.H328N 0.42 tolerated(0.06) benign(0.013) TCGA-55-8092-01 7 100200090 100200090 C A PCOLCE Missense_Mutation p.A4E 0.40 deleterious_low_confidence(0.01) benign(0.205) TCGA-55-8092-01 7 100348424 100348424 C T ZAN Missense_Mutation p.P476S 0.13 benign(0.025) TCGA-55-8092-01 7 100402834 100402834 C A EPHB4 Missense_Mutation p.A930S 0.36 tolerated(0.43) benign(0.366) TCGA-55-8092-01 7 100677167 100677167 A G MUC17 Missense_Mutation p.S824G 0.10 unknown(0) TCGA-55-8092-01 7 100681272 100681272 T G MUC17 Missense_Mutation p.V2192G 0.36 unknown(0) TCGA-55-8092-01 7 104742541 104742541 C A KMT2E Missense_Mutation p.T699K 0.39 tolerated_low_confidence(0.18) benign(0.002) TCGA-55-8092-01 7 107408040 107408040 C T SLC26A3 Missense_Mutation p.R752H 0.33 deleterious_low_confidence(0.01) benign(0.04) TCGA-55-8092-01 7 110764165 110764165 C A LRRN3 Missense_Mutation p.A446D 0.12 deleterious(0) probably_damaging(1) TCGA-55-8092-01 7 111982809 111982809 C T ZNF277 3'UTR 0.31 TCGA-55-8092-01 7 112555405 112555405 C A C7orf60 Missense_Mutation p.W86C 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-8092-01 7 114619641 114619641 C T MDFIC Missense_Mutation p.H209Y 0.09 tolerated(0.11) possibly_damaging(0.674) TCGA-55-8092-01 7 120911417 120911417 C A CPED1 Missense_Mutation p.T934K 0.35 deleterious(0) probably_damaging(0.999) TCGA-55-8092-01 7 121691550 121691550 G C PTPRZ1 Missense_Mutation p.K2051N 0.12 deleterious(0) probably_damaging(0.996) TCGA-55-8092-01 7 124404480 124404480 C G GPR37 Missense_Mutation p.R184T 0.38 deleterious(0.03) benign(0.051) TCGA-55-8092-01 7 128487899 128487899 G T FLNC Silent p.V1479V 0.09 TCGA-55-8092-01 7 129049331 129049331 G A AHCYL2 Missense_Mutation p.R437Q 0.14 tolerated(0.11) benign(0.165) TCGA-55-8092-01 7 133622721 133622721 G A EXOC4 Missense_Mutation p.R702H 0.11 deleterious(0.05) benign(0.318) TCGA-55-8092-01 7 136701023 136701023 G A CHRM2 3'UTR 0.12 TCGA-55-8092-01 7 140481402 140481402 C G BRAF Missense_Mutation p.G469A 0.50 deleterious(0.01) possibly_damaging(0.773) TCGA-55-8092-01 7 141763343 141763343 A T MGAM Silent p.P1434P 0.15 TCGA-55-8092-01 7 142143686 142143686 G A TRBV6-7 Nonsense_Mutation p.Q104* 0.12 TCGA-55-8092-01 7 142180795 142180795 C A TRBV6-5 Missense_Mutation p.G22C 0.04 deleterious(0) probably_damaging(0.995) TCGA-55-8092-01 7 14661016 14661016 C A DGKB Missense_Mutation p.G425V 0.12 deleterious(0.01) possibly_damaging(0.558) TCGA-55-8092-01 7 14741351 14741351 C A DGKB Missense_Mutation p.M157I 0.10 tolerated(0.06) benign(0.219) TCGA-55-8092-01 7 148876884 148876884 A G ZNF398 Silent p.G640G 0.56 TCGA-55-8092-01 7 151271982 151271982 G A PRKAG2 Missense_Mutation p.P334S 0.09 deleterious(0.02) benign(0.065) TCGA-55-8092-01 7 154684489 154684489 T C DPP6 3'UTR 0.18 TCGA-55-8092-01 7 22533417 22533417 A G STEAP1B Silent p.P41P 0.22 TCGA-55-8092-01 7 4116702 4116702 A T SDK1 Missense_Mutation p.H1028L 0.08 tolerated(1) benign(0.001) TCGA-55-8092-01 7 43918114 43918114 C A URGCP Missense_Mutation p.W316C 0.38 deleterious(0) probably_damaging(0.991) TCGA-55-8092-01 7 44796638 44796638 A G ZMIZ2 Silent p.P86P 0.09 TCGA-55-8092-01 7 47343038 47343038 C A TNS3 Silent p.P989P 0.27 TCGA-55-8092-01 7 57187815 57187815 G T ZNF479 Missense_Mutation p.P436H 0.29 deleterious(0.02) benign(0.044) TCGA-55-8092-01 7 72419823 72419823 C G POM121 3'UTR 0.12 TCGA-55-8092-01 7 72738406 72738406 G T TRIM50 Missense_Mutation p.T127N 0.31 deleterious(0.05) benign(0.312) TCGA-55-8092-01 7 72891683 72891683 T A BAZ1B Missense_Mutation p.E703V 0.10 tolerated(0.09) benign(0.347) TCGA-55-8092-01 7 76069856 76069856 C G ZP3 Missense_Mutation p.P330A 0.21 tolerated(0.4) benign(0) TCGA-55-8092-01 7 77572057 77572057 C T PHTF2 Missense_Mutation p.S604F 0.20 deleterious(0) probably_damaging(0.988) TCGA-55-8092-01 7 79842052 79842052 G A GNAI1 Missense_Mutation p.M247I 0.06 deleterious(0.01) benign(0.309) TCGA-55-8092-01 7 83036508 83036508 C T SEMA3E Missense_Mutation p.D240N 0.15 deleterious(0.01) benign(0.048) TCGA-55-8092-01 7 87144635 87144635 G A ABCB1 Missense_Mutation p.T1065M 0.46 deleterious(0) probably_damaging(1) TCGA-55-8092-01 7 87564433 87564433 G T ADAM22 Missense_Mutation p.G60C 0.47 tolerated(0.06) benign(0.004) TCGA-55-8092-01 7 883121 883121 G A SUN1 Missense_Mutation p.V208M 0.08 tolerated(0.22) benign(0.004) TCGA-55-8092-01 7 89790157 89790157 T C STEAP1 Silent p.P41P 0.08 TCGA-55-8092-01 7 91743097 91743097 G A CYP51A1 Missense_Mutation p.T471I 0.15 deleterious(0.03) possibly_damaging(0.844) TCGA-55-8092-01 7 92761058 92761058 T C SAMD9L Silent p.Q1409Q 0.42 TCGA-55-8092-01 7 92765060 92765060 C T SAMD9L Silent p.L75L 0.35 TCGA-55-8092-01 7 98254278 98254278 C A NPTX2 Missense_Mutation p.P230T 0.11 deleterious(0) probably_damaging(0.973) TCGA-55-8092-01 7 99691393 99691393 G A MCM7 Intron 0.12 TCGA-55-8092-01 7 99798842 99798842 C T GATS 3'UTR 0.34 TCGA-55-8092-01 8 104340590 104340590 G C FZD6 Missense_Mutation p.S496T 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-55-8092-01 8 104427488 104427488 C T DCAF13 Silent p.P90P 0.07 TCGA-55-8092-01 8 10470685 10470685 T A RP1L1 Missense_Mutation p.D308V 0.16 probably_damaging(0.981) TCGA-55-8092-01 8 113267624 113267624 G T CSMD3 Missense_Mutation p.Q3299K 0.33 tolerated(0.3) benign(0.103) TCGA-55-8092-01 8 125988590 125988590 G T ZNF572 Missense_Mutation p.G27V 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-8092-01 8 133492653 133492653 C A KCNQ3 Missense_Mutation p.V43L 0.22 tolerated(0.3) benign(0.007) TCGA-55-8092-01 8 133984078 133984078 C A TG Nonsense_Mutation p.C2005* 0.12 TCGA-55-8092-01 8 134128909 134128909 C - TG Frame_Shift_Del p.R2605Efs*49 0.12 TCGA-55-8092-01 8 139164174 139164174 G T FAM135B Silent p.P848P 0.11 TCGA-55-8092-01 8 139890499 139890499 T A COL22A1 Missense_Mutation p.K51M 0.36 unknown(0) TCGA-55-8092-01 8 141294005 141294005 G A TRAPPC9 Silent p.I797I 0.12 TCGA-55-8092-01 8 142487573 142487573 C T MROH5 3'UTR 0.31 TCGA-55-8092-01 8 144946090 144946090 G A EPPK1 Silent p.G444G 0.17 TCGA-55-8092-01 8 146066790 146066790 C T ZNF7 Silent p.L100L 0.13 TCGA-55-8092-01 8 21767437 21767437 G T DOK2 Silent p.T208T 0.14 TCGA-55-8092-01 8 30701681 30701681 G C TEX15 Missense_Mutation p.S1618C 0.22 deleterious(0) possibly_damaging(0.794) TCGA-55-8092-01 8 37823713 37823713 G T ADRB3 Missense_Mutation p.P92Q 0.07 deleterious(0) probably_damaging(1) TCGA-55-8092-01 8 38146269 38146269 G C WHSC1L1 Missense_Mutation p.N1079K 0.14 deleterious(0) probably_damaging(1) TCGA-55-8092-01 8 42320588 42320588 G A SLC20A2 Missense_Mutation p.P151S 0.44 deleterious(0) probably_damaging(1) TCGA-55-8092-01 8 51465635 51465635 G T SNTG1 Missense_Mutation p.V236L 0.13 tolerated(1) benign(0.002) TCGA-55-8092-01 8 57358367 57358367 A G PENK Intron 0.14 TCGA-55-8092-01 8 57890671 57890671 C A IMPAD1 Missense_Mutation p.C195F 0.10 deleterious(0) probably_damaging(0.998) TCGA-55-8092-01 8 59518564 59518564 G A NSMAF Silent p.L295L 0.13 TCGA-55-8092-01 8 72964957 72964957 G C TRPA1 Missense_Mutation p.A563G 0.09 deleterious(0) probably_damaging(0.949) TCGA-55-8092-01 8 72968018 72968018 G A TRPA1 Nonsense_Mutation p.Q423* 0.34 TCGA-55-8092-01 8 73849885 73849885 C A KCNB2 Missense_Mutation p.D765E 0.09 tolerated_low_confidence(0.76) benign(0.001) TCGA-55-8092-01 8 82392704 82392704 C - FABP4 Frame_Shift_Del p.G68Afs*18 0.33 TCGA-55-8092-01 8 86250502 86250502 C T CA1 Missense_Mutation p.E72K 0.08 deleterious(0.04) benign(0.012) TCGA-55-8092-01 8 87680392 87680392 C A CNGB3 Missense_Mutation p.K166N 0.08 tolerated(0.14) possibly_damaging(0.67) TCGA-55-8092-01 9 100124084 100124084 T A CCDC180 Missense_Mutation p.L1231Q 0.25 deleterious(0.04) benign(0) TCGA-55-8092-01 9 104124900 104124900 G C BAAT Missense_Mutation p.S356C 0.23 tolerated(0.48) benign(0.336) TCGA-55-8092-01 9 104307066 104307066 G C RNF20 Missense_Mutation p.E216Q 0.39 tolerated(0.19) benign(0.403) TCGA-55-8092-01 9 109691558 109691558 C T ZNF462 Missense_Mutation p.R1789C 0.16 probably_damaging(0.996) TCGA-55-8092-01 9 113243687 113243687 C A SVEP1 Missense_Mutation p.V734L 0.20 benign(0.008) TCGA-55-8092-01 9 127572586 127572586 C T OLFML2A Silent p.N618N 0.14 TCGA-55-8092-01 9 127618016 127618016 G A WDR38 Silent p.L98L 0.26 TCGA-55-8092-01 9 135786048 135786048 T A TSC1 Silent p.P391P 0.28 TCGA-55-8092-01 9 136917482 136917482 G A BRD3 Silent p.S99S 0.58 TCGA-55-8092-01 9 139694476 139694476 A T CCDC183 Missense_Mutation p.K98M 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-55-8092-01 9 140772648 140772648 C A CACNA1B Missense_Mutation p.A88E 0.07 deleterious(0) benign(0.162) TCGA-55-8092-01 9 33301376 33301376 G C NFX1 Missense_Mutation p.L383F 0.07 deleterious(0) probably_damaging(0.994) TCGA-55-8092-01 9 35679275 35679275 C T CA9 Missense_Mutation p.P334L 0.10 deleterious(0) probably_damaging(1) TCGA-55-8092-01 9 5929152 5929152 C T KIAA2026 Nonsense_Mutation p.W797* 0.31 TCGA-55-8092-01 9 73424950 73424950 C A TRPM3 Intron 0.44 TCGA-55-8092-01 9 93650132 93650132 G C SYK Missense_Mutation p.L561F 0.27 tolerated(0.14) probably_damaging(1) TCGA-55-8092-01 X 100912025 100912025 G T ARMCX2 Missense_Mutation p.P184T 0.24 deleterious_low_confidence(0.01) benign(0.241) TCGA-55-8092-01 X 102348024 102348024 G T NXF3 5'UTR 0.52 TCGA-55-8092-01 X 112024285 112024285 G A AMOT Missense_Mutation p.R768C 0.27 unknown(0) TCGA-55-8092-01 X 117959242 117959242 G A ZCCHC12 Missense_Mutation p.R12Q 0.35 tolerated(0.3) benign(0.025) TCGA-55-8092-01 X 123514833 123514833 C - TENM1 Frame_Shift_Del p.K2584Nfs*32 0.34 TCGA-55-8092-01 X 129518638 129518638 G C GPR119 Missense_Mutation p.R262G 0.49 tolerated(0.16) benign(0.072) TCGA-55-8092-01 X 130419306 130419306 C A IGSF1 Missense_Mutation p.V172L 0.22 tolerated(0.36) benign(0.099) TCGA-55-8092-01 X 136649371 136649371 C T ZIC3 Missense_Mutation p.S174L 0.25 tolerated(0.06) benign(0.273) TCGA-55-8092-01 X 146307394 146307394 A T MIR513A2 RNA 0.43 TCGA-55-8092-01 X 1471251 1471251 G A IL3RA Silent p.T156T 0.17 TCGA-55-8092-01 X 149013306 149013306 C A MAGEA8 Missense_Mutation p.S87Y 0.30 tolerated(0.08) probably_damaging(0.976) TCGA-55-8092-01 X 152773768 152773768 C G BGN Silent p.G324G 0.28 TCGA-55-8092-01 X 153588355 153588355 C T FLNA Intron 0.24 TCGA-55-8092-01 X 153589708 153589708 G A FLNA Silent p.L1059L 0.26 TCGA-55-8092-01 X 17743882 17743882 G T NHS Silent p.P531P 0.10 TCGA-55-8092-01 X 21450829 21450829 G A CNKSR2 Missense_Mutation p.G110S 0.23 tolerated(0.54) benign(0.014) TCGA-55-8092-01 X 21675117 21675117 G A KLHL34 Missense_Mutation p.R264C 0.33 deleterious(0.01) possibly_damaging(0.586) TCGA-55-8092-01 X 24228512 24228512 G A ZFX Silent p.K479K 0.24 TCGA-55-8092-01 X 3238832 3238832 A T MXRA5 Missense_Mutation p.Y1632N 0.27 deleterious(0.01) benign(0.393) TCGA-55-8092-01 X 65390520 65390520 G T HEPH Missense_Mutation p.Q90H 0.46 tolerated(0.55) possibly_damaging(0.519) TCGA-55-8092-01 X 65476106 65476106 G T HEPH Missense_Mutation p.G998W 0.55 tolerated(0.19) probably_damaging(0.991) TCGA-55-8092-01 X 68836338 68836338 A T EDA Silent p.L62L 0.69 TCGA-55-8092-01 X 69646754 69646754 G C GDPD2 Missense_Mutation p.V199L 0.51 tolerated(0.19) benign(0.001) TCGA-55-8092-01 X 70384154 70384154 C T NLGN3 Missense_Mutation p.L297F 0.30 deleterious(0) probably_damaging(0.994) TCGA-55-8092-01 X 71358694 71358694 T A NHSL2 Silent p.P432P 0.54 TCGA-55-8092-01 X 72667544 72667544 G A CDX4 Missense_Mutation p.S152N 0.48 tolerated(0.19) benign(0.013) TCGA-55-8092-01 X 77243905 77243905 G A ATP7A Silent p.L96L 0.30 TCGA-55-8092-01 X 91131903 91131903 G T PCDH11X Nonsense_Mutation p.E222* 0.28 TCGA-55-8094-01 10 105218327 105218327 G T CALHM1 Missense_Mutation p.P61H 0.38 deleterious(0) probably_damaging(0.999) TCGA-55-8094-01 10 123970691 123970691 G C TACC2 Missense_Mutation p.G2251R 0.23 benign(0.081) TCGA-55-8094-01 10 124594350 124594351 - A CUZD1 Frame_Shift_Ins p.L418Ffs*10 0.29 TCGA-55-8094-01 10 134598456 134598456 G T NKX6-2 Silent p.V266V 0.38 TCGA-55-8094-01 10 13789739 13789739 T C FRMD4A Missense_Mutation p.Y182C 0.19 deleterious(0) probably_damaging(0.997) TCGA-55-8094-01 10 329265 329265 C A DIP2C Missense_Mutation p.R1414L 0.32 deleterious(0) probably_damaging(0.995) TCGA-55-8094-01 10 35300818 35300818 C A CUL2 Missense_Mutation p.M707I 0.17 deleterious(0.01) benign(0.023) TCGA-55-8094-01 10 37421191 37421191 A C ANKRD30A Silent p.L122L 0.33 TCGA-55-8094-01 10 5541246 5541246 G T CALML5 Silent p.L52L 0.16 TCGA-55-8094-01 10 55664970 55664970 A T PCDH15 Intron 0.39 TCGA-55-8094-01 10 69966659 69966659 C A MYPN Nonsense_Mutation p.Y1264* 0.56 TCGA-55-8094-01 10 74813307 74813307 C A P4HA1 Nonsense_Mutation p.E169* 0.20 TCGA-55-8094-01 10 79769363 79769364 CT - POLR3A Frame_Shift_Del p.R614Gfs*21 0.42 TCGA-55-8094-01 10 84118494 84118494 G T NRG3 Splice_Site p.X275_splice 0.15 TCGA-55-8094-01 10 88415952 88415952 C A OPN4 Missense_Mutation p.T62K 0.48 tolerated(0.06) probably_damaging(0.979) TCGA-55-8094-01 10 91359022 91359022 C G PANK1 Missense_Mutation p.V433L 0.47 deleterious(0.01) probably_damaging(0.985) TCGA-55-8094-01 10 96333866 96333866 A G HELLS Silent p.P209P 0.38 TCGA-55-8094-01 10 99342436 99342436 G T ANKRD2 Missense_Mutation p.A304S 0.41 deleterious(0.04) possibly_damaging(0.841) TCGA-55-8094-01 10 99350165 99350165 C T C10orf62 Missense_Mutation p.L171F 0.40 tolerated(0.06) probably_damaging(0.998) TCGA-55-8094-01 11 102713483 102713483 G - MMP3 Frame_Shift_Del p.R91Gfs*29 0.33 TCGA-55-8094-01 11 114450956 114450956 C T NXPE4 Missense_Mutation p.A333T 0.39 tolerated(0.49) benign(0.095) TCGA-55-8094-01 11 118772168 118772168 C A BCL9L Missense_Mutation p.D762Y 0.26 possibly_damaging(0.819) TCGA-55-8094-01 11 121428094 121428094 G T SORL1 Silent p.L881L 0.41 TCGA-55-8094-01 11 123624358 123624358 A G OR6X1 Missense_Mutation p.I290T 0.12 deleterious(0) benign(0.04) TCGA-55-8094-01 11 123886748 123886749 - T OR10G4 Frame_Shift_Ins p.V157Cfs*23 0.23 TCGA-55-8094-01 11 124267042 124267042 A T OR8B3 Missense_Mutation p.I69N 0.09 deleterious_low_confidence(0) possibly_damaging(0.634) TCGA-55-8094-01 11 124857317 124857317 G T CCDC15 Nonsense_Mutation p.E399* 0.39 TCGA-55-8094-01 11 1264283 1264283 G C MUC5B Missense_Mutation p.G2058A 0.19 unknown(0) TCGA-55-8094-01 11 128709842 128709842 G T KCNJ1 Missense_Mutation p.H118Q 0.23 deleterious(0.03) benign(0.401) TCGA-55-8094-01 11 129739464 129739464 G - NFRKB Frame_Shift_Del p.I1178Sfs*38 0.26 TCGA-55-8094-01 11 15994631 15994631 T A SOX6 Silent p.T717T 0.21 TCGA-55-8094-01 11 1619506 1619506 A T KRTAP5-2 5'UTR 0.27 TCGA-55-8094-01 11 20136343 20136343 T G NAV2 Splice_Site p.X2447_splice 0.30 TCGA-55-8094-01 11 30032336 30032336 C T KCNA4 Silent p.Q630Q 0.36 TCGA-55-8094-01 11 31086605 31086605 G T DCDC1 Silent p.T798T 0.35 TCGA-55-8094-01 11 31653874 31653874 G T ELP4 Missense_Mutation p.K283N 0.42 deleterious(0.02) benign(0.219) TCGA-55-8094-01 11 379559 379559 G T B4GALNT4 Silent p.P782P 0.47 TCGA-55-8094-01 11 4411619 4411619 C A TRIM21 Missense_Mutation p.L7F 0.17 deleterious(0) probably_damaging(0.935) TCGA-55-8094-01 11 4674742 4674742 C A OR51E1 3'UTR 0.25 TCGA-55-8094-01 11 47857248 47857248 C A NUP160 Missense_Mutation p.M352I 0.30 tolerated(0.49) benign(0.01) TCGA-55-8094-01 11 5080175 5080175 C A OR52E2 Missense_Mutation p.R228L 0.49 tolerated(0.09) benign(0.072) TCGA-55-8094-01 11 51412116 51412116 C G OR4A5 Missense_Mutation p.G94R 0.24 deleterious_low_confidence(0) benign(0.163) TCGA-55-8094-01 11 55032777 55032777 C A TRIM48 Missense_Mutation p.A149D 0.45 deleterious(0) probably_damaging(0.975) TCGA-55-8094-01 11 55038196 55038196 G T TRIM48 3'UTR 0.20 TCGA-55-8094-01 11 55111575 55111575 G T OR4A16 Missense_Mutation p.W300L 0.45 tolerated_low_confidence(0.1) benign(0.016) TCGA-55-8094-01 11 55606407 55606407 C G OR5D16 Silent p.P60P 0.21 TCGA-55-8094-01 11 5862246 5862246 C A OR52E6 Silent p.G294G 0.28 TCGA-55-8094-01 11 58972340 58972340 C A DTX4 Silent p.A606A 0.47 TCGA-55-8094-01 11 59604781 59604781 C T GIF Missense_Mutation p.C246Y 0.25 deleterious(0) probably_damaging(0.991) TCGA-55-8094-01 11 5969254 5969254 G T OR56A3 Silent p.L226L 0.20 TCGA-55-8094-01 11 6023421 6023421 T A OR56A4 Missense_Mutation p.R320W 0.33 deleterious(0) probably_damaging(0.96) TCGA-55-8094-01 11 62156689 62156689 A T ASRGL1 Missense_Mutation p.K192N 0.30 deleterious(0) probably_damaging(0.968) TCGA-55-8094-01 11 6292588 6292588 C A CCKBR Missense_Mutation p.P387T 0.18 deleterious(0) probably_damaging(1) TCGA-55-8094-01 11 64032796 64032796 C T PLCB3 Missense_Mutation p.P953S 0.62 tolerated(1) benign(0.002) TCGA-55-8094-01 11 65270058 65270059 - G MALAT1 RNA 0.19 TCGA-55-8094-01 11 6588453 6588453 G T DNHD1 Missense_Mutation p.S3905I 0.23 possibly_damaging(0.575) TCGA-55-8094-01 11 66839000 66839000 C T RHOD Missense_Mutation p.A187V 0.31 tolerated(0.1) benign(0.09) TCGA-55-8094-01 11 68707074 68707074 G T IGHMBP2 Missense_Mutation p.G953C 0.27 deleterious(0) probably_damaging(0.999) TCGA-55-8094-01 11 76871274 76871274 G T MYO7A Silent p.V382V 0.17 TCGA-55-8094-01 11 76912616 76912616 G T MYO7A Missense_Mutation p.R1659L 0.30 tolerated(0.14) possibly_damaging(0.508) TCGA-55-8094-01 11 7847496 7847496 A G OR5P3 Silent p.T8T 0.33 TCGA-55-8094-01 11 8959439 8959439 G T ASCL3 Nonsense_Mutation p.Y90* 0.15 TCGA-55-8094-01 11 94113891 94113891 A G GPR83 Silent p.A232A 0.30 TCGA-55-8094-01 11 94731474 94731474 G T KDM4D Missense_Mutation p.G313V 0.40 tolerated(0.07) probably_damaging(0.962) TCGA-55-8094-01 12 100048923 100048923 C A ANKS1B Silent p.T398T 0.23 TCGA-55-8094-01 12 10271128 10271128 C A CLEC7A Missense_Mutation p.V225L 0.46 tolerated(0.31) benign(0.007) TCGA-55-8094-01 12 110207105 110207106 - G FAM222A 3'UTR 0.33 TCGA-55-8094-01 12 117665347 117665347 G T NOS1 Missense_Mutation p.L1203M 0.58 tolerated(0.06) probably_damaging(1) TCGA-55-8094-01 12 122284985 122284985 C T HPD Silent p.A244A 0.21 TCGA-55-8094-01 12 131283099 131283099 C A STX2 Missense_Mutation p.A253S 0.26 deleterious(0) probably_damaging(1) TCGA-55-8094-01 12 132491379 132491379 A T EP400 Silent p.T1087T 0.57 TCGA-55-8094-01 12 132512784 132512784 A T EP400 Missense_Mutation p.M1778L 0.10 unknown(0) TCGA-55-8094-01 12 22069983 22069983 T C ABCC9 Missense_Mutation p.K154R 0.02 tolerated(0.22) benign(0.005) TCGA-55-8094-01 12 22354472 22354472 T G ST8SIA1 3'UTR 0.06 TCGA-55-8094-01 12 24989465 24989465 G A BCAT1 Silent p.L307L 0.70 TCGA-55-8094-01 12 25398282 25398282 C A KRAS Missense_Mutation p.G13C 0.72 deleterious(0.02) probably_damaging(0.997) TCGA-55-8094-01 12 28458598 28458598 T C CCDC91 Silent p.L42L 0.19 TCGA-55-8094-01 12 40076414 40076414 C A C12orf40 Missense_Mutation p.L230I 0.24 deleterious(0.05) benign(0.029) TCGA-55-8094-01 12 41318435 41318436 - A CNTN1 Frame_Shift_Ins p.P160Tfs*8 0.13 TCGA-55-8094-01 12 48361989 48361989 G T TMEM106C Nonsense_Mutation p.G244* 0.51 TCGA-55-8094-01 12 5021397 5021397 G T KCNA1 Missense_Mutation p.A285S 0.54 tolerated(0.1) possibly_damaging(0.813) TCGA-55-8094-01 12 52284917 52284917 G T ANKRD33 Missense_Mutation p.R396M 0.56 deleterious(0.01) possibly_damaging(0.723) TCGA-55-8094-01 12 52885425 52885425 C A KRT6A Silent p.P212P 0.20 TCGA-55-8094-01 12 53086629 53086629 T C KRT77 Silent p.G372G 0.49 TCGA-55-8094-01 12 53096729 53096729 C T KRT77 Missense_Mutation p.E164K 0.27 deleterious(0) probably_damaging(0.998) TCGA-55-8094-01 12 55820793 55820793 C A OR6C76 Nonsense_Mutation p.C252* 0.14 TCGA-55-8094-01 12 57619598 57619598 A T NXPH4 3'UTR 0.27 TCGA-55-8094-01 12 6696924 6696924 G C CHD4 Silent p.L1219L 0.22 TCGA-55-8094-01 12 6702590 6702590 G A CHD4 Missense_Mutation p.R836C 0.24 deleterious(0) benign(0.282) TCGA-55-8094-01 12 68619400 68619400 T C IL26 Missense_Mutation p.Y46C 0.29 tolerated(0.06) probably_damaging(0.946) TCGA-55-8094-01 12 72936070 72936070 G C TRHDE Splice_Site p.X530_splice 0.34 TCGA-55-8094-01 12 78598773 78598773 C G NAV3 Missense_Mutation p.P2276R 0.61 deleterious(0) probably_damaging(0.96) TCGA-55-8094-01 13 103703661 103703661 G T SLC10A2 Missense_Mutation p.A236E 0.66 deleterious(0.01) possibly_damaging(0.663) TCGA-55-8094-01 13 114793323 114793323 C A RASA3 Missense_Mutation p.R177I 0.20 deleterious(0) probably_damaging(0.999) TCGA-55-8094-01 13 25466834 25466834 T A CENPJ Nonsense_Mutation p.R1055* 0.39 TCGA-55-8094-01 13 26112177 26112177 G T ATP8A2 Missense_Mutation p.D187Y 0.41 deleterious(0) probably_damaging(1) TCGA-55-8094-01 13 36397008 36397008 C - DCLK1 Frame_Shift_Del p.G471Efs*25 0.30 TCGA-55-8094-01 13 38171387 38171387 C G POSTN Missense_Mutation p.G51A 0.41 deleterious(0) probably_damaging(0.999) TCGA-55-8094-01 13 38237637 38237637 T A TRPC4 Missense_Mutation p.N535I 0.41 deleterious(0) probably_damaging(0.943) TCGA-55-8094-01 13 52585448 52585448 G C ATP7B Missense_Mutation p.T9R 0.23 deleterious_low_confidence(0.02) benign(0.006) TCGA-55-8094-01 13 61987355 61987355 C A PCDH20 Nonsense_Mutation p.E293* 0.33 TCGA-55-8094-01 13 73348154 73348154 C A DIS3 Missense_Mutation p.R344I 0.31 tolerated(0.05) benign(0.043) TCGA-55-8094-01 13 92797109 92797109 T A GPC5 Silent p.P476P 0.19 TCGA-55-8094-01 14 101518838 101518838 C A MIR487A RNA 0.74 TCGA-55-8094-01 14 105412059 105412059 G T AHNAK2 Silent p.G3243G 0.41 TCGA-55-8094-01 14 107048679 107048679 C A IGHV3-53 Missense_Mutation p.C114F 0.30 deleterious_low_confidence(0) possibly_damaging(0.533) TCGA-55-8094-01 14 107078541 107078541 T C IGHV1-58 Silent p.G61G 0.77 TCGA-55-8094-01 14 19573144 19573144 G T POTEG Missense_Mutation p.K414N 0.14 deleterious(0.04) benign(0.024) TCGA-55-8094-01 14 22337038 22337038 C A TRAV13-1 5'UTR 0.48 TCGA-55-8094-01 14 23596461 23596461 C T SLC7A8 Missense_Mutation p.M511I 0.43 tolerated(0.43) benign(0.001) TCGA-55-8094-01 14 42357153 42357153 C A LRFN5 Missense_Mutation p.P442H 0.28 deleterious(0.02) probably_damaging(0.957) TCGA-55-8094-01 14 47120935 47120935 C A RPL10L Missense_Mutation p.G2V 0.84 deleterious(0.01) probably_damaging(0.983) TCGA-55-8094-01 14 64727335 64727335 C T ESR2 Missense_Mutation p.A262T 0.68 tolerated(0.28) benign(0) TCGA-55-8094-01 14 70515616 70515616 C T SLC8A3 Missense_Mutation p.A759T 0.53 tolerated(0.38) benign(0) TCGA-55-8094-01 14 74874385 74874385 G T SYNDIG1L Silent p.A190A 0.34 TCGA-55-8094-01 14 80677658 80677658 C G DIO2 Missense_Mutation p.R53P 0.85 tolerated(0.16) benign(0.11) TCGA-55-8094-01 15 101464760 101464760 T C LRRK1 5'UTR 0.33 TCGA-55-8094-01 15 22939184 22939184 G T CYFIP1 Missense_Mutation p.V304L 0.36 deleterious(0) possibly_damaging(0.801) TCGA-55-8094-01 15 26793027 26793027 C T GABRB3 Silent p.V445V 0.27 TCGA-55-8094-01 15 28902403 28902403 T C HERC2P9 RNA 0.29 TCGA-55-8094-01 15 33955859 33955859 A T RYR3 Missense_Mutation p.E1847V 0.30 possibly_damaging(0.881) TCGA-55-8094-01 15 35044898 35044898 C T GJD2 Silent p.E249E 0.43 TCGA-55-8094-01 15 39883424 39883424 G A THBS1 Silent p.Q762Q 0.40 TCGA-55-8094-01 15 43501491 43501491 C A EPB42 Missense_Mutation p.L301F 0.30 tolerated(0.99) benign(0.005) TCGA-55-8094-01 15 48541779 48541779 G A SLC12A1 Silent p.L564L 0.32 TCGA-55-8094-01 15 48784735 48784735 C A FBN1 Missense_Mutation p.C926F 0.42 probably_damaging(1) TCGA-55-8094-01 15 50595209 50595209 C T GABPB1 Missense_Mutation p.V130I 0.33 tolerated(0.13) benign(0.036) TCGA-55-8094-01 15 55970154 55970154 C T PRTG Missense_Mutation p.A408T 0.44 deleterious(0) probably_damaging(0.933) TCGA-55-8094-01 15 59971854 59971857 CACT ACA BNIP2 Frame_Shift_Del p.S198Cfs*6 0.41 TCGA-55-8094-01 15 60653163 60653163 A - ANXA2 Frame_Shift_Del p.S130Lfs*3 0.27 TCGA-55-8094-01 15 75320694 75320694 C A PPCDC Missense_Mutation p.P12H 0.33 tolerated(0.09) benign(0.017) TCGA-55-8094-01 15 77425347 77425347 C G PEAK1 Missense_Mutation p.K1359N 0.41 deleterious(0) probably_damaging(0.999) TCGA-55-8094-01 15 79215420 79215420 C A CTSH Missense_Mutation p.V283L 0.36 deleterious(0) probably_damaging(0.973) TCGA-55-8094-01 15 80767473 80767473 G A ARNT2 Silent p.E177E 0.43 TCGA-55-8094-01 15 88690616 88690616 C A NTRK3 Silent p.R138R 0.32 TCGA-55-8094-01 15 88690617 88690617 C A NTRK3 Missense_Mutation p.R138L 0.30 tolerated(0.52) possibly_damaging(0.617) TCGA-55-8094-01 16 22587946 22587946 G C RP11-368J21.3 RNA 0.29 TCGA-55-8094-01 16 30391298 30391298 G T SEPT1 Missense_Mutation p.D210E 0.53 possibly_damaging(0.851) TCGA-55-8094-01 16 31382466 31382466 G T ITGAX Missense_Mutation p.G591V 0.21 deleterious(0) probably_damaging(0.999) TCGA-55-8094-01 16 46771658 46771658 G A MYLK3 Silent p.A322A 0.39 TCGA-55-8094-01 16 55862853 55862853 G A CES1 Missense_Mutation p.T29I 0.22 tolerated(0.07) probably_damaging(0.992) TCGA-55-8094-01 16 57003901 57003901 A G CETP Missense_Mutation p.Q172R 0.37 deleterious(0.01) benign(0.204) TCGA-55-8094-01 16 57734084 57734084 A T CCDC135 Missense_Mutation p.T136S 0.24 deleterious(0.04) probably_damaging(0.946) TCGA-55-8094-01 16 69680966 69680966 G T NFAT5 Missense_Mutation p.G97C 0.30 probably_damaging(0.999) TCGA-55-8094-01 16 84012099 84012099 G A NECAB2 Missense_Mutation p.V93I 0.25 tolerated(0.19) probably_damaging(0.998) TCGA-55-8094-01 16 84884260 84884260 G T CRISPLD2 Silent p.A193A 0.23 TCGA-55-8094-01 17 10322315 10322315 A T MYH8 Silent p.P81P 0.91 TCGA-55-8094-01 17 11687628 11687628 C A DNAH9 Missense_Mutation p.S2611R 0.19 probably_damaging(0.923) TCGA-55-8094-01 17 1494673 1494673 C A SLC43A2 Missense_Mutation p.S274I 0.80 deleterious(0) probably_damaging(0.958) TCGA-55-8094-01 17 16455877 16455877 G C ZNF287 Missense_Mutation p.Q527E 0.19 tolerated(0.06) possibly_damaging(0.886) TCGA-55-8094-01 17 18022664 18022664 G T MYO15A Missense_Mutation p.G184W 0.17 probably_damaging(0.997) TCGA-55-8094-01 17 18539789 18539789 C G TBC1D28 Missense_Mutation p.V207L 0.39 deleterious_low_confidence(0) benign(0.014) TCGA-55-8094-01 17 18541988 18541988 G C TBC1D28 Silent p.T75T 0.40 TCGA-55-8094-01 17 18630883 18630883 G A TRIM16L Missense_Mutation p.E5K 0.18 tolerated(0.09) benign(0.271) TCGA-55-8094-01 17 18916823 18916823 G A SLC5A10 Missense_Mutation p.M377I 0.27 deleterious(0) possibly_damaging(0.622) TCGA-55-8094-01 17 19316023 19316023 A C RNF112 Missense_Mutation p.Q103P 0.12 tolerated(0.19) benign(0.006) TCGA-55-8094-01 17 2203823 2203823 T A SMG6 Missense_Mutation p.K75I 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.812) TCGA-55-8094-01 17 33585709 33585709 G A SLFN5 5'UTR 0.44 TCGA-55-8094-01 17 3384912 3384912 A C ASPA Missense_Mutation p.E84D 0.30 tolerated(0.51) benign(0.045) TCGA-55-8094-01 17 35930774 35930774 C A SYNRG Missense_Mutation p.A437S 0.23 tolerated(0.46) benign(0.026) TCGA-55-8094-01 17 41934471 41934471 G T CD300LG Splice_Site p.X278_splice 0.48 TCGA-55-8094-01 17 43341989 43341989 G T SPATA32 5'Flank 0.43 TCGA-55-8094-01 17 45492281 45492281 C T EFCAB13 Silent p.S830S 0.17 TCGA-55-8094-01 17 46198926 46198926 A T SNX11 3'UTR 0.43 TCGA-55-8094-01 17 47122352 47122352 G T IGF2BP1 Splice_Site p.X441_splice 0.39 TCGA-55-8094-01 17 55065061 55065061 G T SCPEP1 Missense_Mutation p.Q107H 0.19 deleterious(0.05) benign(0.275) TCGA-55-8094-01 17 67300872 67300872 A C ABCA5 Missense_Mutation p.L290V 0.15 tolerated(0.16) probably_damaging(0.99) TCGA-55-8094-01 17 68128272 68128272 C A KCNJ16 Missense_Mutation p.A15E 0.17 tolerated_low_confidence(0.2) benign(0.006) TCGA-55-8094-01 17 7155850 7155850 G T ELP5 Missense_Mutation p.G10V 0.41 tolerated_low_confidence(0.09) benign(0.009) TCGA-55-8094-01 17 72945412 72945412 C A OTOP3 Nonsense_Mutation p.Y564* 0.48 TCGA-55-8094-01 17 73096237 73096237 G T SLC16A5 Missense_Mutation p.R160L 0.32 deleterious(0.02) benign(0.059) TCGA-55-8094-01 17 7576897 7576897 G A TP53 Nonsense_Mutation p.Q317* 0.89 TCGA-55-8094-01 17 77808216 77808216 C G CBX4 Missense_Mutation p.V409L 0.16 tolerated(0.19) benign(0) TCGA-55-8094-01 17 78162310 78162310 G T CARD14 Missense_Mutation p.E270D 0.32 deleterious(0.04) benign(0.025) TCGA-55-8094-01 17 78410092 78410092 C T ENDOV 3'UTR 0.57 TCGA-55-8094-01 18 14106130 14106130 C T ZNF519 Missense_Mutation p.E137K 0.11 tolerated(1) benign(0.005) TCGA-55-8094-01 18 14106161 14106161 C T ZNF519 Silent p.K126K 0.11 TCGA-55-8094-01 18 14106174 14106174 C T ZNF519 Missense_Mutation p.R122K 0.11 tolerated(1) benign(0.014) TCGA-55-8094-01 18 14106261 14106261 C G ZNF519 Missense_Mutation p.G93A 0.12 tolerated(0.94) benign(0.008) TCGA-55-8094-01 18 14478672 14478672 G T CXADRP3 RNA 0.66 TCGA-55-8094-01 18 19780748 19780748 G T GATA6 Missense_Mutation p.V584L 0.54 tolerated(0.36) probably_damaging(0.991) TCGA-55-8094-01 18 2890834 2890834 A T EMILIN2 Missense_Mutation p.T237S 0.51 tolerated(1) benign(0) TCGA-55-8094-01 18 28968453 28968453 G T DSG4 Missense_Mutation p.V114L 0.38 tolerated(0.1) possibly_damaging(0.861) TCGA-55-8094-01 18 31323276 31323276 C G ASXL3 Missense_Mutation p.S1155W 0.18 probably_damaging(0.978) TCGA-55-8094-01 18 61324569 61324569 T C SERPINB3 Missense_Mutation p.K183E 0.82 deleterious(0) probably_damaging(0.993) TCGA-55-8094-01 18 6301947 6301947 C A L3MBTL4 Nonsense_Mutation p.E28* 0.31 TCGA-55-8094-01 18 8387193 8387193 G C PTPRM Missense_Mutation p.E1390Q 0.20 tolerated(0.27) benign(0.023) TCGA-55-8094-01 18 8825652 8825652 G A SOGA2 Missense_Mutation p.E1382K 0.30 deleterious(0) probably_damaging(0.999) TCGA-55-8094-01 19 10610225 10610225 T C KEAP1 Missense_Mutation p.Y162C 0.38 deleterious(0) probably_damaging(0.997) TCGA-55-8094-01 19 10685704 10685704 C T AP1M2 Missense_Mutation p.G350E 0.50 deleterious(0) probably_damaging(1) TCGA-55-8094-01 19 11417406 11417406 G A TSPAN16 Missense_Mutation p.V193M 0.23 tolerated(0.11) possibly_damaging(0.888) TCGA-55-8094-01 19 1255633 1255633 G T MIDN Missense_Mutation p.A357S 0.36 tolerated(0.37) benign(0.364) TCGA-55-8094-01 19 13414675 13414675 G A CACNA1A Silent p.N670N 0.40 TCGA-55-8094-01 19 13941589 13941589 C T ZSWIM4 Missense_Mutation p.R899C 0.50 deleterious(0) unknown(0) TCGA-55-8094-01 19 17753678 17753678 A G UNC13A Silent p.H816H 0.47 TCGA-55-8094-01 19 20829185 20829185 G T ZNF626 Silent p.A10A 0.38 TCGA-55-8094-01 19 2117251 2117251 T A AP3D1 Missense_Mutation p.K610M 0.46 deleterious(0) probably_damaging(0.998) TCGA-55-8094-01 19 21324931 21324931 C A ZNF431 5'UTR 0.79 TCGA-55-8094-01 19 22170020 22170020 G C ZNF208 Missense_Mutation p.P75R 0.26 tolerated(0.1) benign(0.342) TCGA-55-8094-01 19 30936134 30936136 CGG TT ZNF536 Frame_Shift_Del p.G556Wfs*13 0.38 TCGA-55-8094-01 19 31768654 31768654 C A TSHZ3 Missense_Mutation p.S682I 0.10 deleterious(0.05) benign(0.209) TCGA-55-8094-01 19 31768999 31768999 G T TSHZ3 Nonsense_Mutation p.S567* 0.28 TCGA-55-8094-01 19 33490573 33490573 G T RHPN2 Missense_Mutation p.L382M 0.06 deleterious(0.03) benign(0.363) TCGA-55-8094-01 19 43358102 43358102 G A PSG10P Intron 0.37 TCGA-55-8094-01 19 43579556 43579556 C T PSG2 Missense_Mutation p.R220Q 0.35 tolerated(0.77) benign(0.012) TCGA-55-8094-01 19 43708110 43708110 A G PSG4 Missense_Mutation p.Y120H 0.36 deleterious(0) probably_damaging(1) TCGA-55-8094-01 19 44933222 44933222 C G ZNF229 Silent p.G578G 0.42 TCGA-55-8094-01 19 45895537 45895537 T A PPP1R13L Silent p.P472P 0.32 TCGA-55-8094-01 19 47137359 47137359 T G GNG8 Missense_Mutation p.K63Q 0.51 tolerated(0.22) probably_damaging(0.995) TCGA-55-8094-01 19 47589764 47589764 G T ZC3H4 Silent p.G249G 0.29 TCGA-55-8094-01 19 48342786 48342786 C G CRX Silent p.T154T 0.37 TCGA-55-8094-01 19 48982509 48982509 G T CYTH2 3'UTR 0.31 TCGA-55-8094-01 19 50655839 50655839 C A IZUMO2 3'UTR 0.36 TCGA-55-8094-01 19 51379989 51379989 C A KLK2 Silent p.G156G 0.36 TCGA-55-8094-01 19 53116752 53116752 G T ZNF83 Missense_Mutation p.R356S 0.42 tolerated(0.2) benign(0.332) TCGA-55-8094-01 19 53857013 53857013 G A ZNF845 3'UTR 0.38 TCGA-55-8094-01 19 54410140 54410140 C T PRKCG Silent p.P695P 0.40 TCGA-55-8094-01 19 54803067 54803067 C A LILRA3 Missense_Mutation p.A204S 0.46 tolerated(0.78) benign(0.001) TCGA-55-8094-01 19 54876442 54876442 G C LAIR1 5'UTR 0.20 TCGA-55-8094-01 19 55086784 55086784 C G LILRA2 Missense_Mutation p.S239R 0.40 tolerated(0.09) benign(0.013) TCGA-55-8094-01 19 55112292 55112292 G A LILRA1 3'UTR 0.22 TCGA-55-8094-01 19 55263928 55263928 C T KIR2DL3 Missense_Mutation p.T328I 0.34 deleterious(0.02) probably_damaging(0.986) TCGA-55-8094-01 19 55341667 55341667 T A KIR3DL1 Missense_Mutation p.D424E 0.36 tolerated(0.5) benign(0.049) TCGA-55-8094-01 19 56370072 56370072 T G NLRP4 Missense_Mutation p.L438R 0.41 deleterious(0) probably_damaging(0.998) TCGA-55-8094-01 19 57086030 57086030 G T ZNF470 Missense_Mutation p.V71L 0.29 tolerated(0.08) benign(0.01) TCGA-55-8094-01 19 57642466 57642466 A T USP29 Missense_Mutation p.K808M 0.43 deleterious(0.01) possibly_damaging(0.759) TCGA-55-8094-01 19 57647194 57647194 C A ZIM3 Missense_Mutation p.A171S 0.31 tolerated(0.64) benign(0.006) TCGA-55-8094-01 19 58640001 58640001 T C ZNF329 Silent p.L290L 0.28 TCGA-55-8094-01 19 7125393 7125393 G A INSR Silent p.R1053R 0.32 TCGA-55-8094-01 19 8619594 8619594 G T MYO1F Missense_Mutation p.P59T 0.69 deleterious(0) probably_damaging(1) TCGA-55-8094-01 19 9075689 9075689 A C MUC16 Silent p.T3919T 0.50 TCGA-55-8094-01 1 102312423 102312423 C T OLFM3 Intron 0.85 TCGA-55-8094-01 1 112525148 112525148 G T KCND3 Silent p.G67G 0.85 TCGA-55-8094-01 1 115596034 115596034 A C TSPAN2 Missense_Mutation p.I189S 0.36 deleterious(0) benign(0.358) TCGA-55-8094-01 1 119958096 119958096 C A HSD3B2 Silent p.I18I 0.47 TCGA-55-8094-01 1 12887215 12887217 CTT - PRAMEF11 In_Frame_Del p.K214del 0.14 TCGA-55-8094-01 1 152275708 152275708 C A FLG Missense_Mutation p.R3885I 0.17 unknown(0) TCGA-55-8094-01 1 152283566 152283566 G T FLG Missense_Mutation p.Q1266K 0.34 benign(0.149) TCGA-55-8094-01 1 153234351 153234351 G T LOR Missense_Mutation p.W309L 0.38 unknown(0) TCGA-55-8094-01 1 153751292 153751292 C T SLC27A3 Missense_Mutation p.T573I 0.21 deleterious(0) probably_damaging(0.999) TCGA-55-8094-01 1 155870234 155870234 C G RIT1 Missense_Mutation p.S219T 0.13 tolerated(0.07) benign(0.028) TCGA-55-8094-01 1 156108970 156108970 C G LMNA 3'UTR 0.26 TCGA-55-8094-01 1 156142757 156142757 C A SEMA4A Silent p.G425G 0.40 TCGA-55-8094-01 1 156146213 156146213 G C SEMA4A Missense_Mutation p.V571L 0.34 tolerated(0.31) benign(0.043) TCGA-55-8094-01 1 156264222 156264222 G A C1orf85 Silent p.A171A 0.16 TCGA-55-8094-01 1 156352644 156352644 G T RHBG Silent p.V406V 0.51 TCGA-55-8094-01 1 156877971 156877971 G T PEAR1 Silent p.T318T 0.06 TCGA-55-8094-01 1 157802987 157802987 C A CD5L Missense_Mutation p.C345F 0.32 deleterious(0) probably_damaging(0.995) TCGA-55-8094-01 1 158390239 158390239 C T OR10K2 Missense_Mutation p.V140M 0.13 tolerated(0.11) benign(0.047) TCGA-55-8094-01 1 158669764 158669764 G T OR6K2 Missense_Mutation p.L227I 0.16 deleterious(0.03) possibly_damaging(0.858) TCGA-55-8094-01 1 158812104 158812104 A G MNDA Missense_Mutation p.K54R 0.34 tolerated(0.14) benign(0.031) TCGA-55-8094-01 1 165183011 165183011 T A LMX1A Missense_Mutation p.H179L 0.55 tolerated(0.21) benign(0.002) TCGA-55-8094-01 1 166039438 166039438 C G FAM78B 3'UTR 0.30 TCGA-55-8094-01 1 167095964 167095964 C A DUSP27 Missense_Mutation p.N532K 0.28 deleterious(0) possibly_damaging(0.662) TCGA-55-8094-01 1 167096261 167096261 G C DUSP27 Missense_Mutation p.E631D 0.27 deleterious(0) probably_damaging(0.997) TCGA-55-8094-01 1 169500026 169500026 G T F5 Missense_Mutation p.P1736T 0.19 tolerated(0.35) benign(0.193) TCGA-55-8094-01 1 171154856 171154856 G A FMO2 Missense_Mutation p.A2T 0.21 tolerated(0.12) benign(0.086) TCGA-55-8094-01 1 173931080 173931080 T A RC3H1 Missense_Mutation p.Y662F 0.40 tolerated(0.23) benign(0.02) TCGA-55-8094-01 1 17657545 17657546 - A PADI4 Frame_Shift_Ins p.K60Efs*27 0.37 TCGA-55-8094-01 1 176927594 176927594 G T ASTN1 Silent p.G541G 0.41 TCGA-55-8094-01 1 178269185 178269185 G T RASAL2 Missense_Mutation p.R130M 0.15 deleterious(0) probably_damaging(0.999) TCGA-55-8094-01 1 178780464 178780464 T A RALGPS2 Silent p.V104V 0.41 TCGA-55-8094-01 1 183093764 183093764 A T LAMC1 Splice_Site p.X801_splice 0.22 TCGA-55-8094-01 1 185270182 185270182 C T IVNS1ABP Missense_Mutation p.E348K 0.26 tolerated(0.51) benign(0.206) TCGA-55-8094-01 1 185987359 185987359 A G HMCN1 Missense_Mutation p.K1782R 0.23 benign(0.026) TCGA-55-8094-01 1 186276694 186276694 G A PRG4 Missense_Mutation p.E615K 0.26 unknown(0) TCGA-55-8094-01 1 192627481 192627481 C A RGS13 Missense_Mutation p.P93Q 0.51 tolerated(0.08) probably_damaging(1) TCGA-55-8094-01 1 196696020 196696020 G T CFH Missense_Mutation p.R729I 0.15 deleterious(0.01) possibly_damaging(0.502) TCGA-55-8094-01 1 201330356 201330356 C A TNNT2 Intron 0.47 TCGA-55-8094-01 1 202911196 202911196 G A ADIPOR1 Missense_Mutation p.A319V 0.44 tolerated(0.6) benign(0.029) TCGA-55-8094-01 1 202920093 202920093 C A ADIPOR1 Nonsense_Mutation p.E36* 0.43 TCGA-55-8094-01 1 208390472 208390472 C A PLXNA2 Missense_Mutation p.V266L 0.17 tolerated(0.8) benign(0.024) TCGA-55-8094-01 1 214802428 214802428 G A CENPF Missense_Mutation p.D370N 0.26 probably_damaging(0.983) TCGA-55-8094-01 1 216380628 216380628 A C USH2A Missense_Mutation p.D1101E 0.15 possibly_damaging(0.776) TCGA-55-8094-01 1 217856609 217856609 C A SPATA17 Silent p.R101R 0.31 TCGA-55-8094-01 1 220232120 220232120 C A BPNT1 3'UTR 0.34 TCGA-55-8094-01 1 22987611 22987611 C A C1QB Missense_Mutation p.P165H 0.31 deleterious(0) possibly_damaging(0.873) TCGA-55-8094-01 1 237664091 237664091 A T RYR2 Missense_Mutation p.S762C 0.23 benign(0.046) TCGA-55-8094-01 1 238046127 238046127 G T ZP4 Missense_Mutation p.N470K 0.19 tolerated(0.92) benign(0.001) TCGA-55-8094-01 1 241929585 241929585 G T WDR64 Missense_Mutation p.L661F 0.19 deleterious(0.05) probably_damaging(0.963) TCGA-55-8094-01 1 2452749 2452749 T A PANK4 Silent p.T71T 0.56 TCGA-55-8094-01 1 247582177 247582177 G T NLRP3 Missense_Mutation p.M27I 0.38 tolerated(0.23) probably_damaging(0.979) TCGA-55-8094-01 1 248004784 248004784 C A OR11L1 Missense_Mutation p.G139W 0.50 tolerated(0.11) benign(0.214) TCGA-55-8094-01 1 248059469 248059469 C A OR2W3 Missense_Mutation p.A194D 0.18 tolerated(0.2) possibly_damaging(0.756) TCGA-55-8094-01 1 248202414 248202414 C A OR2L2 Missense_Mutation p.P282Q 0.16 deleterious(0) probably_damaging(0.998) TCGA-55-8094-01 1 248262757 248262757 T A OR2L13 Nonsense_Mutation p.L27* 0.42 TCGA-55-8094-01 1 26441054 26441054 C T PDIK1L Silent p.S85S 0.46 TCGA-55-8094-01 1 34663306 34663306 G T C1orf94 Missense_Mutation p.K267N 0.54 deleterious(0.01) probably_damaging(0.999) TCGA-55-8094-01 1 35250702 35250702 C T GJB3 Silent p.C113C 0.32 TCGA-55-8094-01 1 35370504 35370504 C A DLGAP3 Nonsense_Mutation p.E161* 0.65 TCGA-55-8094-01 1 44133469 44133469 G T KDM4A Missense_Mutation p.K314N 0.55 deleterious(0) benign(0.218) TCGA-55-8094-01 1 44595665 44595665 G T KLF17 Missense_Mutation p.S241I 0.27 deleterious(0) benign(0.035) TCGA-55-8094-01 1 70460311 70460311 T A LRRC7 Silent p.I295I 0.24 TCGA-55-8094-01 1 74540461 74540461 G T LRRIQ3 Missense_Mutation p.P294H 0.39 tolerated(0.05) benign(0.053) TCGA-55-8094-01 1 74670341 74670341 G T FPGT Nonsense_Mutation p.G204* 0.62 TCGA-55-8094-01 1 78187836 78187836 G A USP33 Missense_Mutation p.P510S 0.29 deleterious(0) probably_damaging(1) TCGA-55-8094-01 1 82456735 82456735 A G LPHN2 Missense_Mutation p.N1373S 0.35 tolerated_low_confidence(1) benign(0.01) TCGA-55-8094-01 1 84417870 84417870 C A TTLL7 Missense_Mutation p.V9F 0.53 deleterious_low_confidence(0.02) possibly_damaging(0.646) TCGA-55-8094-01 1 85422123 85422123 C A MCOLN2 Missense_Mutation p.V186F 0.24 deleterious(0.01) benign(0.153) TCGA-55-8094-01 1 89886666 89886666 C G GBP1P1 RNA 0.14 TCGA-55-8094-01 1 91859800 91859800 G T HFM1 Nonsense_Mutation p.S115* 0.22 TCGA-55-8094-01 1 9416296 9416296 G T SPSB1 Missense_Mutation p.G116W 0.28 deleterious(0) probably_damaging(1) TCGA-55-8094-01 1 94502771 94502771 C A ABCA4 Missense_Mutation p.R1248I 0.61 deleterious(0.01) probably_damaging(0.971) TCGA-55-8094-01 1 99753707 99753707 G C LPPR4 Splice_Site p.X136_splice 0.14 TCGA-55-8094-01 20 1435763 1435763 C - NSFL1C Frame_Shift_Del p.G100Afs*35 0.29 TCGA-55-8094-01 20 1918285 1918285 G A SIRPA 3'UTR 0.60 TCGA-55-8094-01 20 19677438 19677438 T G SLC24A3 Intron 0.39 TCGA-55-8094-01 20 34091823 34091823 G T CEP250 Missense_Mutation p.A1876S 0.85 benign(0.034) TCGA-55-8094-01 20 36611766 36611766 C A TTI1 3'UTR 0.21 TCGA-55-8094-01 20 39317311 39317311 G A MAFB Silent p.L60L 0.42 TCGA-55-8094-01 20 40733238 40733238 T G PTPRT Missense_Mutation p.N1171H 0.33 tolerated(0.16) probably_damaging(0.994) TCGA-55-8094-01 20 52775623 52775623 G C CYP24A1 Missense_Mutation p.R344G 0.64 deleterious(0) probably_damaging(0.992) TCGA-55-8094-01 20 54972439 54972439 T C CSTF1 Missense_Mutation p.Y116H 0.24 deleterious(0) possibly_damaging(0.69) TCGA-55-8094-01 20 55027604 55027604 C A CASS4 Missense_Mutation p.L458M 0.19 deleterious(0) probably_damaging(0.999) TCGA-55-8094-01 20 55027672 55027672 C A CASS4 Missense_Mutation p.H480Q 0.63 deleterious(0.01) possibly_damaging(0.836) TCGA-55-8094-01 20 55108546 55108546 A T FAM209B Missense_Mutation p.E50V 0.38 deleterious(0) probably_damaging(0.991) TCGA-55-8094-01 20 60714829 60714829 G A PSMA7 Intron 0.16 TCGA-55-8094-01 20 60899535 60899535 G C LAMA5 Missense_Mutation p.H1869D 0.32 benign(0.024) TCGA-55-8094-01 20 61439626 61439626 G T OGFR Missense_Mutation p.D90Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-55-8094-01 20 76731 76731 T C DEFB125 Silent p.L48L 0.40 TCGA-55-8094-01 21 32185276 32185276 G T KRTAP8-1 3'UTR 0.23 TCGA-55-8094-01 21 32185365 32185365 C A KRTAP8-1 Silent p.S58S 0.54 TCGA-55-8094-01 21 32253764 32253764 G T KRTAP11-1 Missense_Mutation p.T27N 0.31 deleterious(0.05) benign(0.184) TCGA-55-8094-01 21 45708262 45708262 T A AIRE Silent p.A191A 0.34 TCGA-55-8094-01 21 46032183 46032183 T C KRTAP10-8 Missense_Mutation p.C56R 0.24 deleterious(0) benign(0.001) TCGA-55-8094-01 21 46326915 46326915 G T ITGB2 Silent p.P81P 0.60 TCGA-55-8094-01 22 16449697 16449697 C A OR11H1 Missense_Mutation p.W36C 0.11 deleterious(0.01) possibly_damaging(0.571) TCGA-55-8094-01 22 20394611 20394613 CTC - PI4KAP1 RNA 0.30 TCGA-55-8094-01 22 20458191 20458191 G T RIMBP3 Silent p.G1037G 0.17 TCGA-55-8094-01 22 32651317 32651317 G T SLC5A4 5'UTR 0.40 TCGA-55-8094-01 22 35947909 35947909 G C RASD2 Missense_Mutation p.A211P 0.52 tolerated(0.19) benign(0.002) TCGA-55-8094-01 22 39428305 39428305 G T APOBEC3D Missense_Mutation p.R382L 0.42 deleterious(0.04) benign(0.081) TCGA-55-8094-01 2 107460219 107460219 C A ST6GAL2 Missense_Mutation p.G72V 0.52 benign(0.001) TCGA-55-8094-01 2 113832822 113832822 G A IL1F10 Missense_Mutation p.A114T 0.24 deleterious(0) possibly_damaging(0.806) TCGA-55-8094-01 2 113940672 113940672 A C PSD4 Missense_Mutation p.E213D 0.26 tolerated_low_confidence(0.24) benign(0.009) TCGA-55-8094-01 2 130877831 130877831 G A POTEF Silent p.H86H 0.11 TCGA-55-8094-01 2 131976233 131976233 C T POTEE Silent p.H86H 0.28 TCGA-55-8094-01 2 136528276 136528276 C T UBXN4 Nonsense_Mutation p.R265* 0.24 TCGA-55-8094-01 2 136567238 136567238 G T LCT Missense_Mutation p.F893L 0.37 tolerated(0.08) benign(0.046) TCGA-55-8094-01 2 141359036 141359036 G T LRP1B Silent p.A2324A 0.27 TCGA-55-8094-01 2 161030489 161030489 C A ITGB6 Missense_Mutation p.C252F 0.05 deleterious(0) probably_damaging(1) TCGA-55-8094-01 2 166866254 166866254 G T SCN1A Missense_Mutation p.A1326D 0.29 deleterious(0) probably_damaging(1) TCGA-55-8094-01 2 170092469 170092469 A T LRP2 Missense_Mutation p.C1601S 0.19 benign(0.006) TCGA-55-8094-01 2 172841109 172841109 C T HAT1 Silent p.S279S 0.19 TCGA-55-8094-01 2 179595843 179595843 T G TTN Missense_Mutation p.K5850T 0.28 TCGA-55-8094-01 2 179597723 179597723 C A TTN Missense_Mutation p.G5394C 0.21 TCGA-55-8094-01 2 179635205 179635205 C T TTN Missense_Mutation p.V2772M 0.30 TCGA-55-8094-01 2 1926499 1926499 C A MYT1L Nonsense_Mutation p.E348* 0.22 TCGA-55-8094-01 2 197541439 197541439 A G CCDC150 Missense_Mutation p.E475G 0.22 deleterious(0) benign(0.011) TCGA-55-8094-01 2 202545596 202545596 G A MPP4 Silent p.C298C 0.48 TCGA-55-8094-01 2 203242242 203242242 A G BMPR2 Silent p.P15P 0.24 TCGA-55-8094-01 2 203424702 203424702 T C BMPR2 3'UTR 0.19 TCGA-55-8094-01 2 207174068 207174068 C T ZDBF2 Missense_Mutation p.R1606W 0.25 deleterious(0) possibly_damaging(0.689) TCGA-55-8094-01 2 207310211 207310211 T C ADAM23 Missense_Mutation p.L132P 0.29 deleterious(0) probably_damaging(1) TCGA-55-8094-01 2 21229797 21229797 G T APOB Missense_Mutation p.L3315I 0.20 benign(0.005) TCGA-55-8094-01 2 217525361 217525361 G T IGFBP2 Missense_Mutation p.S175I 0.23 tolerated(0.12) benign(0.013) TCGA-55-8094-01 2 224464016 224464016 T A SCG2 Splice_Site 0.33 TCGA-55-8094-01 2 233899621 233899621 G T NEU2 Missense_Mutation p.A333S 0.31 deleterious(0.02) probably_damaging(1) TCGA-55-8094-01 2 241724474 241724474 G T KIF1A Missense_Mutation p.H218N 0.23 deleterious(0) probably_damaging(1) TCGA-55-8094-01 2 27280267 27280267 G T AGBL5 Silent p.P544P 0.68 TCGA-55-8094-01 2 29240674 29240674 G T FAM179A Silent p.R404R 0.12 TCGA-55-8094-01 2 29247039 29247039 C A FAM179A Missense_Mutation p.A551D 0.57 deleterious(0) probably_damaging(0.997) TCGA-55-8094-01 2 29247040 29247040 C T FAM179A Silent p.A551A 0.57 TCGA-55-8094-01 2 29296486 29296486 C A C2orf71 Silent p.L214L 0.12 TCGA-55-8094-01 2 33749040 33749040 G T RASGRP3 Missense_Mutation p.W204L 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-8094-01 2 40366681 40366681 G C SLC8A1 Missense_Mutation p.A802G 0.56 tolerated(0.07) possibly_damaging(0.791) TCGA-55-8094-01 2 50723170 50723170 T A NRXN1 Missense_Mutation p.K1021N 0.14 tolerated(0.23) possibly_damaging(0.732) TCGA-55-8094-01 2 54858111 54858111 A G SPTBN1 Missense_Mutation p.K976R 0.55 tolerated(0.58) probably_damaging(0.926) TCGA-55-8094-01 2 61753558 61753558 C A XPO1 Silent p.T75T 0.24 TCGA-55-8094-01 2 63280082 63280082 C A OTX1 5'UTR 0.17 TCGA-55-8094-01 2 80101428 80101428 C A CTNNA2 Missense_Mutation p.T271K 0.24 tolerated(0.7) benign(0.026) TCGA-55-8094-01 2 80136846 80136846 C A CTNNA2 Silent p.R327R 0.62 TCGA-55-8094-01 2 80530628 80530628 C A LRRTM1 Missense_Mutation p.G106V 0.52 tolerated(0.18) possibly_damaging(0.609) TCGA-55-8094-01 2 90078019 90078019 C A IGKV3D-20 Missense_Mutation p.T19N 0.55 tolerated(0.21) possibly_damaging(0.528) TCGA-55-8094-01 3 112538736 112538736 C A CD200R1L Missense_Mutation p.R229I 0.38 tolerated(0.28) benign(0.129) TCGA-55-8094-01 3 113955126 113955126 T C ZNF80 Missense_Mutation p.I266V 0.45 tolerated(0.24) benign(0.061) TCGA-55-8094-01 3 118648995 118648995 C A IGSF11 Missense_Mutation p.M60I 0.30 tolerated(0.07) probably_damaging(0.968) TCGA-55-8094-01 3 140122646 140122646 A T CLSTN2 Silent p.T136T 0.39 TCGA-55-8094-01 3 141457314 141457314 A G RNF7 Missense_Mutation p.D44G 0.50 deleterious(0) probably_damaging(0.995) TCGA-55-8094-01 3 15507857 15507857 G A COLQ Missense_Mutation p.P269S 0.83 tolerated(0.33) unknown(0) TCGA-55-8094-01 3 165547891 165547891 C A BCHE Missense_Mutation p.G311W 0.23 deleterious(0.02) benign(0.007) TCGA-55-8094-01 3 165547892 165547892 A T BCHE Nonsense_Mutation p.Y310* 0.22 TCGA-55-8094-01 3 170811640 170811640 C T TNIK Silent p.L903L 0.35 TCGA-55-8094-01 3 182871802 182871802 G A LAMP3 Missense_Mutation p.H143Y 0.35 deleterious(0.03) benign(0.055) TCGA-55-8094-01 3 183824006 183824006 A T HTR3E Missense_Mutation p.Q365L 0.38 deleterious(0) possibly_damaging(0.703) TCGA-55-8094-01 3 186954176 186954176 C G MASP1 Missense_Mutation p.A495P 0.48 deleterious(0) probably_damaging(0.998) TCGA-55-8094-01 3 32933250 32933250 G T TRIM71 Missense_Mutation p.D852Y 0.41 deleterious(0) probably_damaging(0.958) TCGA-55-8094-01 3 40223855 40223855 G T MYRIP Missense_Mutation p.D340Y 0.32 deleterious(0.02) possibly_damaging(0.502) TCGA-55-8094-01 3 47037928 47037928 G T NBEAL2 Silent p.V773V 1.00 TCGA-55-8094-01 3 52029475 52029475 C T RPL29 Translation_Start_Site p.M1? 0.32 deleterious(0.02) benign(0.126) TCGA-55-8094-01 3 57898350 57898350 A T SLMAP Missense_Mutation p.T614S 0.30 tolerated_low_confidence(0.84) benign(0) TCGA-55-8094-01 3 72428487 72428487 C A RYBP Missense_Mutation p.V173F 0.79 deleterious(0.02) possibly_damaging(0.449) TCGA-55-8094-01 3 81640187 81640187 C A GBE1 Splice_Site p.X412_splice 0.19 TCGA-55-8094-01 4 100434166 100434166 T A C4orf17 5'UTR 0.60 TCGA-55-8094-01 4 107845047 107845047 C A DKK2 3'UTR 0.41 TCGA-55-8094-01 4 113333137 113333137 C G ALPK1 Missense_Mutation p.A144G 0.29 tolerated(0.19) possibly_damaging(0.677) TCGA-55-8094-01 4 114278223 114278223 A T ANK2 Missense_Mutation p.T2817S 0.35 benign(0.008) TCGA-55-8094-01 4 115997732 115997732 C A NDST4 Missense_Mutation p.C154F 0.31 deleterious(0) probably_damaging(0.993) TCGA-55-8094-01 4 123270673 123270673 G T KIAA1109 Missense_Mutation p.A4503S 0.33 probably_damaging(0.975) TCGA-55-8094-01 4 123377359 123377359 C G IL2 Splice_Site p.X50_splice 0.45 TCGA-55-8094-01 4 123377472 123377472 G T IL2 Missense_Mutation p.Q42K 0.38 tolerated(0.18) possibly_damaging(0.462) TCGA-55-8094-01 4 126389779 126389779 G A FAT4 Silent p.T4004T 0.20 TCGA-55-8094-01 4 128651828 128651828 G T SLC25A31 Missense_Mutation p.R43L 0.29 deleterious(0) probably_damaging(0.985) TCGA-55-8094-01 4 134071240 134071240 G T PCDH10 5'UTR 0.47 TCGA-55-8094-01 4 141592064 141592064 T - TBC1D9 Frame_Shift_Del p.K359Rfs*20 0.29 TCGA-55-8094-01 4 146686250 146686250 T A ZNF827 Silent p.I1040I 0.36 TCGA-55-8094-01 4 147560364 147560364 C A POU4F2 Silent p.P24P 0.50 TCGA-55-8094-01 4 147561660 147561660 T C POU4F2 Silent p.N310N 0.39 TCGA-55-8094-01 4 147824714 147824714 G T TTC29 Missense_Mutation p.L190I 0.44 deleterious(0.01) probably_damaging(0.943) TCGA-55-8094-01 4 156751016 156751016 C A ASIC5 Nonsense_Mutation p.E504* 0.15 TCGA-55-8094-01 4 187455599 187455599 G T MTNR1A Missense_Mutation p.H99Q 0.46 tolerated(0.31) benign(0.022) TCGA-55-8094-01 4 2829391 2829391 A T SH3BP2 Silent p.G249G 0.22 TCGA-55-8094-01 4 2964864 2964864 C A NOP14 Silent p.R61R 0.45 TCGA-55-8094-01 4 30724787 30724787 C A PCDH7 Silent p.I581I 0.34 TCGA-55-8094-01 4 46973237 46973237 A C GABRA4 Missense_Mutation p.M246R 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-8094-01 4 55976687 55976687 C A KDR Missense_Mutation p.G380W 0.21 deleterious(0.02) possibly_damaging(0.828) TCGA-55-8094-01 4 66356194 66356194 T A EPHA5 Missense_Mutation p.T435S 0.45 tolerated(0.09) probably_damaging(0.987) TCGA-55-8094-01 4 71275125 71275125 G C PROL1 Missense_Mutation p.R27T 0.42 deleterious_low_confidence(0.04) benign(0.402) TCGA-55-8094-01 4 96762441 96762441 A T PDHA2 Silent p.P380P 0.31 TCGA-55-8094-01 4 99337948 99337948 G T RAP1GDS1 Missense_Mutation p.E273D 0.38 tolerated(0.21) benign(0.008) TCGA-55-8094-01 5 10402693 10402693 G A MARCH6 Missense_Mutation p.G391S 0.11 deleterious(0) probably_damaging(1) TCGA-55-8094-01 5 112676389 112676389 A G MCC Missense_Mutation p.S152P 0.28 deleterious_low_confidence(0) possibly_damaging(0.447) TCGA-55-8094-01 5 121413730 121413730 A T LOX 5'UTR 0.36 TCGA-55-8094-01 5 126753489 126753489 T G MEGF10 Missense_Mutation p.C430W 0.85 deleterious(0) possibly_damaging(0.839) TCGA-55-8094-01 5 137257391 137257391 C A PKD2L2 Silent p.I465I 0.77 TCGA-55-8094-01 5 140209001 140209001 C A PCDHA6 Missense_Mutation p.S442Y 0.41 deleterious_low_confidence(0.03) benign(0.344) TCGA-55-8094-01 5 140236161 140236161 T C PCDHA10 Silent p.Y176Y 0.43 TCGA-55-8094-01 5 140536977 140536977 C G PCDHB17 Silent p.P467P 0.28 TCGA-55-8094-01 5 140562949 140562949 G C PCDHB16 Missense_Mutation p.G272A 0.83 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-8094-01 5 140788043 140788043 C A PCDHGB6 Missense_Mutation p.R92S 0.73 deleterious(0) probably_damaging(0.998) TCGA-55-8094-01 5 148620251 148620251 G T ABLIM3 Missense_Mutation p.G406V 0.38 deleterious(0) possibly_damaging(0.585) TCGA-55-8094-01 5 149509368 149509368 G A PDGFRB Missense_Mutation p.R511C 0.87 deleterious(0.01) possibly_damaging(0.485) TCGA-55-8094-01 5 156670710 156670710 G T ITK Missense_Mutation p.G380C 0.38 deleterious(0) probably_damaging(1) TCGA-55-8094-01 5 159821765 159821765 C T C5orf54 Missense_Mutation p.A245T 0.38 tolerated(0.08) possibly_damaging(0.637) TCGA-55-8094-01 5 161128659 161128659 C A GABRA6 Silent p.T414T 0.34 TCGA-55-8094-01 5 16670930 16670930 C T MYO10 Missense_Mutation p.R1863H 0.09 deleterious(0.01) benign(0.016) TCGA-55-8094-01 5 171766861 171766861 C A SH3PXD2B Missense_Mutation p.W416C 0.70 deleterious(0) probably_damaging(1) TCGA-55-8094-01 5 176305065 176305065 C A UNC5A Silent p.A602A 0.36 TCGA-55-8094-01 5 176316701 176316701 G A HK3 Silent p.G225G 0.82 TCGA-55-8094-01 5 178506242 178506242 A C ZNF354C Missense_Mutation p.K270T 0.37 deleterious(0) possibly_damaging(0.893) TCGA-55-8094-01 5 19838969 19838969 C A CDH18 Missense_Mutation p.G43C 0.11 deleterious(0) possibly_damaging(0.817) TCGA-55-8094-01 5 33588885 33588885 G A ADAMTS12 Missense_Mutation p.S895L 0.14 deleterious(0) probably_damaging(0.99) TCGA-55-8094-01 5 33684113 33684113 C G ADAMTS12 Missense_Mutation p.E228Q 0.08 tolerated(0.17) probably_damaging(0.994) TCGA-55-8094-01 5 36122997 36122997 G A LMBRD2 Missense_Mutation p.H297Y 0.14 deleterious(0.04) benign(0.066) TCGA-55-8094-01 5 40843720 40843720 A T CARD6 Silent p.S250S 0.09 TCGA-55-8094-01 5 42695191 42695191 G T GHR Missense_Mutation p.V147L 0.22 deleterious(0) probably_damaging(0.979) TCGA-55-8094-01 5 43616166 43616166 G T NNT Missense_Mutation p.G200C 0.11 deleterious(0) probably_damaging(0.913) TCGA-55-8094-01 5 52353897 52353897 A T ITGA2 Missense_Mutation p.Q380L 0.09 deleterious(0) possibly_damaging(0.548) TCGA-55-8094-01 6 105231991 105231991 C T HACE1 Missense_Mutation p.M512I 0.34 tolerated(0.15) benign(0.084) TCGA-55-8094-01 6 110763897 110763897 G T SLC22A16 Missense_Mutation p.H245N 0.80 tolerated(0.1) benign(0.158) TCGA-55-8094-01 6 110763898 110763898 G T SLC22A16 Silent p.V244V 0.80 TCGA-55-8094-01 6 119341148 119341148 C T FAM184A Missense_Mutation p.E443K 0.36 tolerated(0.09) probably_damaging(0.992) TCGA-55-8094-01 6 129618872 129618872 T A LAMA2 Missense_Mutation p.C967S 0.76 deleterious(0) probably_damaging(1) TCGA-55-8094-01 6 133077151 133077151 G T VNN2 Missense_Mutation p.A123E 0.27 tolerated(1) benign(0.004) TCGA-55-8094-01 6 134210643 134210643 G T TCF21 Missense_Mutation p.E36D 0.46 tolerated(0.29) benign(0.001) TCGA-55-8094-01 6 139694818 139694818 G A CITED2 Silent p.A88A 0.56 TCGA-55-8094-01 6 144852199 144852199 G T UTRN Missense_Mutation p.R1973M 0.40 deleterious(0.01) possibly_damaging(0.738) TCGA-55-8094-01 6 153078256 153078256 C A VIP Missense_Mutation p.P165T 0.74 tolerated_low_confidence(0.27) benign(0.007) TCGA-55-8094-01 6 160106032 160106032 C G SOD2 Missense_Mutation p.G126A 0.42 deleterious(0) possibly_damaging(0.746) TCGA-55-8094-01 6 161455335 161455335 C G MAP3K4 Missense_Mutation p.S66C 0.81 tolerated_low_confidence(0.06) benign(0.003) TCGA-55-8094-01 6 25770367 25770367 G T SLC17A4 Missense_Mutation p.A124S 0.24 deleterious(0.01) possibly_damaging(0.905) TCGA-55-8094-01 6 25917231 25917231 T A SLC17A2 Missense_Mutation p.E245V 0.22 deleterious(0) probably_damaging(0.997) TCGA-55-8094-01 6 26373136 26373136 A T BTN3A2 Missense_Mutation p.R243W 0.53 tolerated(0.16) benign(0.002) TCGA-55-8094-01 6 26501822 26501822 C G BTN1A1 Silent p.P28P 0.26 TCGA-55-8094-01 6 29342769 29342769 A G OR12D3 Missense_Mutation p.L99P 0.19 deleterious(0) probably_damaging(0.986) TCGA-55-8094-01 6 29430303 29430303 G C OR2H1 Missense_Mutation p.V253L 0.50 tolerated(0.13) possibly_damaging(0.478) TCGA-55-8094-01 6 3012887 3012887 G T NQO2 Missense_Mutation p.E94D 0.51 tolerated(0.3) benign(0.157) TCGA-55-8094-01 6 30698470 30698472 CGG AA FLOT1 Frame_Shift_Del p.A313Vfs*15 0.11 TCGA-55-8094-01 6 40399890 40399890 G T LRFN2 Missense_Mutation p.H321Q 0.27 deleterious(0) probably_damaging(1) TCGA-55-8094-01 6 44270197 44270197 C A AARS2 Silent p.R806R 0.53 TCGA-55-8094-01 6 47763178 47763178 C A OPN5 Missense_Mutation p.T212K 0.25 deleterious(0.01) probably_damaging(0.932) TCGA-55-8094-01 6 52999124 52999124 T C GCM1 Splice_Site p.X26_splice 0.35 TCGA-55-8094-01 6 56393638 56393638 C G DST Splice_Site p.X3271_splice 0.22 TCGA-55-8094-01 6 6167839 6167839 G T F13A1 Missense_Mutation p.A587E 0.14 tolerated(1) benign(0) TCGA-55-8094-01 6 69728376 69728376 A G BAI3 Missense_Mutation p.M698V 0.48 tolerated(1) benign(0.026) TCGA-55-8094-01 6 80196775 80196775 T G LCA5 Silent p.A680A 0.22 TCGA-55-8094-01 6 83075281 83075281 G T TPBG Silent p.A201A 0.84 TCGA-55-8094-01 6 83732221 83732221 C T UBE3D Missense_Mutation p.S266N 0.30 deleterious(0) possibly_damaging(0.833) TCGA-55-8094-01 6 87968288 87968288 G T ZNF292 Missense_Mutation p.L1647F 0.74 deleterious_low_confidence(0.01) possibly_damaging(0.655) TCGA-55-8094-01 6 9903624 9903624 T A OFCC1 Intron 0.23 TCGA-55-8094-01 7 100451777 100451777 G T SLC12A9 Splice_Site 0.22 TCGA-55-8094-01 7 100466204 100466204 G T TRIP6 Missense_Mutation p.G151C 0.27 tolerated(0.05) possibly_damaging(0.705) TCGA-55-8094-01 7 100677758 100677758 A G MUC17 Missense_Mutation p.S1021G 0.15 probably_damaging(0.958) TCGA-55-8094-01 7 1024666 1024666 C A CYP2W1 Silent p.R140R 0.24 TCGA-55-8094-01 7 107603453 107603453 C A LAMB1 Missense_Mutation p.G585V 0.53 deleterious(0) possibly_damaging(0.847) TCGA-55-8094-01 7 107820809 107820809 G A NRCAM Silent p.I903I 0.48 TCGA-55-8094-01 7 113558659 113558659 C A PPP1R3A Missense_Mutation p.E131D 0.26 deleterious(0) probably_damaging(0.995) TCGA-55-8094-01 7 127847924 127847924 T A MIR129-1 RNA 0.13 TCGA-55-8094-01 7 128482943 128482943 T C FLNC Missense_Mutation p.F829L 0.23 deleterious(0.03) probably_damaging(0.997) TCGA-55-8094-01 7 130140723 130140723 C T MEST Silent p.V247V 0.30 TCGA-55-8094-01 7 131831290 131831290 C A PLXNA4 Silent p.L1678L 0.25 TCGA-55-8094-01 7 131887442 131887442 C A PLXNA4 Missense_Mutation p.G850V 0.20 tolerated(0.21) benign(0.16) TCGA-55-8094-01 7 133876495 133876495 G T LRGUK Missense_Mutation p.V475L 0.31 tolerated(1) benign(0.009) TCGA-55-8094-01 7 134222395 134222396 - A AKR1B10 Frame_Shift_Ins p.T244Nfs*29 0.15 TCGA-55-8094-01 7 137266618 137266618 T A DGKI Silent p.T540T 0.22 TCGA-55-8094-01 7 141740554 141740554 C A MGAM Silent p.V802V 0.25 TCGA-55-8094-01 7 142231979 142231979 C A TRBV10-1 Missense_Mutation p.W15L 0.33 tolerated(0.62) benign(0.03) TCGA-55-8094-01 7 142247158 142247158 G T TRBV7-3 Missense_Mutation p.R100S 0.25 TCGA-55-8094-01 7 142564038 142564038 G A EPHB6 Missense_Mutation p.A476T 0.31 tolerated(0.26) benign(0.013) TCGA-55-8094-01 7 146829410 146829410 T A CNTNAP2 Missense_Mutation p.V386E 0.22 deleterious(0) benign(0.37) TCGA-55-8094-01 7 149521602 149521602 G T SSPO RNA 0.29 TCGA-55-8094-01 7 149522379 149522379 C - SSPO RNA 0.20 TCGA-55-8094-01 7 150715481 150715481 T C ATG9B Missense_Mutation p.Q591R 0.33 tolerated(0.39) benign(0.019) TCGA-55-8094-01 7 150715482 150715482 G T ATG9B Missense_Mutation p.Q591K 0.33 tolerated(0.31) benign(0.2) TCGA-55-8094-01 7 154263993 154263993 G T DPP6 Missense_Mutation p.V207L 0.08 deleterious(0.02) benign(0.029) TCGA-55-8094-01 7 21629011 21629011 T G DNAH11 Missense_Mutation p.F720C 0.05 probably_damaging(0.997) TCGA-55-8094-01 7 23296663 23296663 A G GPNMB Missense_Mutation p.I174V 0.29 tolerated(1) benign(0) TCGA-55-8094-01 7 44156479 44156479 G C POLD2 Silent p.S239S 0.24 TCGA-55-8094-01 7 48311621 48311621 T C ABCA13 Silent p.S786S 0.18 TCGA-55-8094-01 7 48452032 48452032 T C ABCA13 Missense_Mutation p.L4104P 0.24 probably_damaging(0.99) TCGA-55-8094-01 7 56156616 56156616 G T PHKG1 Missense_Mutation p.L7M 0.48 deleterious(0.02) possibly_damaging(0.622) TCGA-55-8094-01 7 65447099 65447099 C A GUSB Missense_Mutation p.Q24H 0.21 tolerated(0.1) benign(0.146) TCGA-55-8094-01 7 70853241 70853241 C A WBSCR17 Missense_Mutation p.S148Y 0.26 deleterious(0) benign(0.188) TCGA-55-8094-01 7 76978695 76978695 T C GSAP Silent p.T506T 0.28 TCGA-55-8094-01 7 81358978 81358978 C A HGF Missense_Mutation p.R328L 0.26 deleterious(0) probably_damaging(0.953) TCGA-55-8094-01 7 82545274 82545274 C A PCLO Missense_Mutation p.D4010Y 0.28 unknown(0) TCGA-55-8094-01 7 87473179 87473179 C A SLC25A40 Splice_Site p.X211_splice 0.16 TCGA-55-8094-01 7 87473180 87473180 T A SLC25A40 Splice_Site p.X211_splice 0.16 TCGA-55-8094-01 7 92731888 92731888 A T SAMD9 Missense_Mutation p.Y1175N 0.29 tolerated(0.3) benign(0.001) TCGA-55-8094-01 7 94057008 94057008 G A COL1A2 Missense_Mutation p.D1113N 0.36 unknown(0) TCGA-55-8094-01 7 99097565 99097565 G A ZNF394 Missense_Mutation p.P51L 0.65 tolerated(0.1) benign(0.029) TCGA-55-8094-01 7 99956460 99956460 G C PILRB Missense_Mutation p.W71S 0.48 deleterious(0) probably_damaging(0.999) TCGA-55-8094-01 8 10388829 10388829 G T PRSS55 Silent p.L124L 0.24 TCGA-55-8094-01 8 110463299 110463299 C A PKHD1L1 Missense_Mutation p.P2091T 0.22 deleterious(0) possibly_damaging(0.897) TCGA-55-8094-01 8 113678542 113678542 G T CSMD3 Missense_Mutation p.A927D 0.69 deleterious(0) probably_damaging(0.987) TCGA-55-8094-01 8 130789753 130789753 T A GSDMC Silent p.L27L 0.31 TCGA-55-8094-01 8 131796020 131796020 G A ADCY8 Missense_Mutation p.A1062V 0.11 tolerated(1) benign(0.048) TCGA-55-8094-01 8 133913625 133913625 G A TG Missense_Mutation p.S1154N 0.17 tolerated(0.08) benign(0.009) TCGA-55-8094-01 8 139163985 139163985 C A FAM135B Missense_Mutation p.L911F 0.13 tolerated(0.15) benign(0.01) TCGA-55-8094-01 8 143399972 143399972 T C TSNARE1 Missense_Mutation p.N306S 0.13 deleterious(0.04) possibly_damaging(0.854) TCGA-55-8094-01 8 143560689 143560689 G T BAI1 Missense_Mutation p.G523C 0.80 deleterious(0) probably_damaging(0.965) TCGA-55-8094-01 8 144652231 144652231 T C MROH6 Missense_Mutation p.M350V 0.16 deleterious(0) benign(0.068) TCGA-55-8094-01 8 145727030 145727030 C A PPP1R16A Missense_Mutation p.P444H 0.12 deleterious(0.03) benign(0.376) TCGA-55-8094-01 8 18729545 18729545 C A PSD3 Missense_Mutation p.G277W 0.27 deleterious_low_confidence(0) possibly_damaging(0.711) TCGA-55-8094-01 8 22102955 22102955 C T POLR3D 5'UTR 0.20 TCGA-55-8094-01 8 24774808 24774808 G T NEFM Missense_Mutation p.L480F 0.24 tolerated(0.15) unknown(0) TCGA-55-8094-01 8 24774809 24774809 G T NEFM Missense_Mutation p.A481S 0.24 tolerated(0.28) unknown(0) TCGA-55-8094-01 8 33449635 33449635 C A DUSP26 Missense_Mutation p.A178S 0.61 tolerated(0.06) probably_damaging(0.999) TCGA-55-8094-01 8 43028855 43028855 G A HGSNAT Splice_Site p.X274_splice 0.52 TCGA-55-8094-01 8 57358302 57358302 G A PENK Intron 0.17 TCGA-55-8094-01 8 7721112 7721112 G T SPAG11A 3'UTR 0.15 TCGA-55-8094-01 8 88885873 88885873 G C DCAF4L2 Silent p.T109T 0.54 TCGA-55-8094-01 9 107266605 107266605 C A OR13F1 Missense_Mutation p.P21H 0.36 tolerated(0.06) probably_damaging(0.959) TCGA-55-8094-01 9 113233662 113233662 G T SVEP1 Missense_Mutation p.L994M 0.25 probably_damaging(0.999) TCGA-55-8094-01 9 115760149 115760149 C T ZNF883 RNA 0.50 TCGA-55-8094-01 9 21206925 21206925 C A IFNA10 Missense_Mutation p.D58Y 0.65 deleterious(0.02) benign(0.297) TCGA-55-8094-01 9 65505622 65505622 G A SPATA31A7 Silent p.S646S 0.26 TCGA-55-8094-01 9 72833383 72833383 T A MAMDC2 Silent p.T594T 0.39 TCGA-55-8094-01 9 79322393 79322393 C T PRUNE2 Silent p.V1599V 0.18 TCGA-55-8094-01 9 79322414 79322414 T G PRUNE2 Missense_Mutation p.Q1592H 0.19 tolerated(0.13) benign(0.012) TCGA-55-8094-01 9 84606458 84606458 G - SPATA31D1 Frame_Shift_Del p.W358Cfs*33 0.28 TCGA-55-8094-01 9 84607144 84607144 C A SPATA31D1 Missense_Mutation p.P587T 0.28 tolerated(0.18) probably_damaging(0.931) TCGA-55-8094-01 9 86616177 86616177 G A RMI1 Silent p.L92L 0.37 TCGA-55-8094-01 9 94485834 94485834 G A ROR2 3'UTR 0.33 TCGA-55-8094-01 9 94486482 94486482 C T ROR2 Missense_Mutation p.S765N 0.37 tolerated(0.35) benign(0.103) TCGA-55-8094-01 X 102192650 102192650 A T RAB40AL Missense_Mutation p.Q135L 0.80 deleterious(0.03) possibly_damaging(0.88) TCGA-55-8094-01 X 103080685 103080685 G A RAB9B Silent p.V10V 0.25 TCGA-55-8094-01 X 103268201 103268201 C A H2BFWT Missense_Mutation p.R11L 0.85 tolerated_low_confidence(0.22) benign(0.001) TCGA-55-8094-01 X 105181509 105181509 T C NRK Missense_Mutation p.I1246T 0.26 deleterious(0) probably_damaging(0.99) TCGA-55-8094-01 X 105181572 105181572 C G NRK Nonsense_Mutation p.S1267* 0.38 TCGA-55-8094-01 X 111698527 111698527 C A ZCCHC16 Missense_Mutation p.P191T 0.63 deleterious(0.02) benign(0.159) TCGA-55-8094-01 X 125299863 125299863 C A DCAF12L2 Silent p.A15A 0.20 TCGA-55-8094-01 X 130678561 130678561 G A OR13H1 Missense_Mutation p.V172I 0.42 tolerated(0.32) benign(0.03) TCGA-55-8094-01 X 140984544 140984544 G A MAGEC3 Intron 0.42 TCGA-55-8094-01 X 152613191 152613191 G C ZNF275 Intron 0.89 TCGA-55-8094-01 X 154344388 154344388 T A BRCC3 Missense_Mutation p.V227E 0.41 tolerated(0.32) possibly_damaging(0.754) TCGA-55-8094-01 X 22108604 22108604 G T PHEX Nonsense_Mutation p.E241* 0.79 TCGA-55-8094-01 X 34961974 34961974 C A FAM47B Silent p.S342S 0.81 TCGA-55-8094-01 X 38080662 38080662 C T SRPX 5'Flank 0.53 TCGA-55-8094-01 X 48339684 48339684 A T FTSJ1 Missense_Mutation p.N141I 0.32 deleterious(0) probably_damaging(0.959) TCGA-55-8094-01 X 48546836 48546836 C T WAS Missense_Mutation p.R309C 0.31 deleterious(0) probably_damaging(0.991) TCGA-55-8094-01 X 49084728 49084728 G T CACNA1F Silent p.T333T 0.18 TCGA-55-8094-01 X 54275344 54275344 G A WNK3 Missense_Mutation p.S1146F 0.93 deleterious(0) probably_damaging(0.984) TCGA-55-8094-01 X 54319407 54319407 C A WNK3 Missense_Mutation p.V651F 0.34 tolerated(0.05) benign(0.27) TCGA-55-8094-01 X 73962506 73962506 T A KIAA2022 Missense_Mutation p.K629I 0.12 deleterious(0) probably_damaging(1) TCGA-55-8094-01 X 75004309 75004309 C A MAGEE2 Missense_Mutation p.R193L 0.23 tolerated(0.23) probably_damaging(0.982) TCGA-55-8094-01 X 82763989 82763989 G T POU3F4 Silent p.L219L 0.21 TCGA-55-8094-01 X 91090477 91090477 C A PCDH11X 5'UTR 0.90 TCGA-55-8096-01 10 118440687 118440687 G T HSPA12A Missense_Mutation p.L335I 0.06 tolerated(0.08) benign(0.131) TCGA-55-8096-01 10 25888106 25888106 C A GPR158 Missense_Mutation p.A1184D 0.10 tolerated(0.13) possibly_damaging(0.572) TCGA-55-8096-01 10 54076112 54076112 C T DKK1 Missense_Mutation p.T155I 0.19 tolerated(0.89) benign(0) TCGA-55-8096-01 10 55583042 55583042 C A PCDH15 Missense_Mutation p.V1484L 0.12 tolerated_low_confidence(0.78) benign(0.001) TCGA-55-8096-01 10 81850697 81850697 A T TMEM254 3'UTR 0.17 TCGA-55-8096-01 10 82277685 82277685 A T TSPAN14 Missense_Mutation p.T256S 0.27 tolerated(0.1) benign(0.033) TCGA-55-8096-01 11 107205608 107205608 G C CWF19L2 Missense_Mutation p.S813C 0.09 deleterious(0) possibly_damaging(0.542) TCGA-55-8096-01 11 118039448 118039448 A G SCN2B Missense_Mutation p.M30T 0.11 deleterious(0) probably_damaging(0.999) TCGA-55-8096-01 11 118498936 118498936 G T PHLDB1 Missense_Mutation p.R466L 0.12 tolerated(0.06) probably_damaging(0.999) TCGA-55-8096-01 11 119029411 119029411 G A ABCG4 Missense_Mutation p.A438T 0.04 deleterious(0.03) possibly_damaging(0.884) TCGA-55-8096-01 11 128843256 128843256 G C ARHGAP32 Missense_Mutation p.P1035A 0.07 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-55-8096-01 11 22291917 22291917 G A ANO5 Missense_Mutation p.S653N 0.13 tolerated(0.15) benign(0.052) TCGA-55-8096-01 11 30255367 30255367 G T FSHB 3'UTR 0.19 TCGA-55-8096-01 11 55606983 55606983 C A OR5D16 Silent p.I252I 0.12 TCGA-55-8096-01 11 56258451 56258451 G T OR5M8 Silent p.G132G 0.07 TCGA-55-8096-01 11 60561459 60561459 G T MS4A10 Silent p.L125L 0.11 TCGA-55-8096-01 11 62435247 62435247 A C METTL12 3'UTR 0.22 TCGA-55-8096-01 12 105538175 105538175 G T KIAA1033 Silent p.L707L 0.08 TCGA-55-8096-01 12 110341741 110341741 G T TCHP Splice_Site p.X63_splice 0.21 TCGA-55-8096-01 12 111353531 111353531 A C MYL2 Missense_Mutation p.F53V 0.10 deleterious(0.02) probably_damaging(0.945) TCGA-55-8096-01 12 111786103 111786103 G A CUX2 Missense_Mutation p.E1479K 0.10 deleterious(0) probably_damaging(0.999) TCGA-55-8096-01 12 117476964 117476964 T C TESC Missense_Mutation p.M207V 0.06 tolerated(0.27) benign(0.004) TCGA-55-8096-01 12 123003576 123003576 C T RSRC2 Missense_Mutation p.G70R 0.15 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-55-8096-01 12 124421651 124421651 C T CCDC92 Missense_Mutation p.G317E 0.05 tolerated_low_confidence(0.22) benign(0.191) TCGA-55-8096-01 12 129293374 129293374 G A SLC15A4 Missense_Mutation p.A406V 0.17 tolerated(0.09) benign(0.145) TCGA-55-8096-01 12 21069225 21069225 G T SLCO1B3 3'UTR 0.15 TCGA-55-8096-01 12 32945344 32945344 C A PKP2 3'UTR 0.10 TCGA-55-8096-01 12 49436376 49436376 T A KMT2D Silent p.P1945P 0.15 TCGA-55-8096-01 12 56211462 56211462 G A SARNP Silent p.L8L 0.10 TCGA-55-8096-01 12 70956766 70956766 C A PTPRB Silent p.G1342G 0.09 TCGA-55-8096-01 12 70956767 70956767 C A PTPRB Missense_Mutation p.G1342V 0.09 tolerated(0.19) benign(0.062) TCGA-55-8096-01 12 77449801 77449801 G C E2F7 Missense_Mutation p.T68S 0.15 deleterious(0) probably_damaging(0.998) TCGA-55-8096-01 12 80626733 80626733 G C OTOGL Missense_Mutation p.V216L 0.17 deleterious(0.03) probably_damaging(0.997) TCGA-55-8096-01 12 85623306 85623306 G A LRRIQ1 Missense_Mutation p.D1612N 0.07 deleterious(0.01) benign(0.372) TCGA-55-8096-01 13 50502073 50502073 C A SPRYD7 Silent p.P124P 0.07 TCGA-55-8096-01 13 88329425 88329425 G A SLITRK5 Silent p.A594A 0.08 TCGA-55-8096-01 14 106845353 106845353 G A IGHV3-35 Silent p.A107A 0.08 TCGA-55-8096-01 14 20389313 20389313 G T OR4K5 Missense_Mutation p.R183L 0.10 tolerated(1) benign(0.017) TCGA-55-8096-01 14 23345405 23345405 G A LRP10 Nonsense_Mutation p.W416* 0.09 TCGA-55-8096-01 14 23345406 23345406 G T LRP10 Missense_Mutation p.V417L 0.09 tolerated(0.06) benign(0.268) TCGA-55-8096-01 14 23885030 23885030 A G MYH7 Silent p.I1655I 0.06 TCGA-55-8096-01 14 39502352 39502352 T A SEC23A 3'UTR 0.27 TCGA-55-8096-01 14 63417226 63417226 C A KCNH5 Missense_Mutation p.G332C 0.08 deleterious(0.04) probably_damaging(1) TCGA-55-8096-01 14 74188044 74188044 C - ELMSAN1 Frame_Shift_Del p.A965Qfs*128 0.18 TCGA-55-8096-01 14 94038260 94038260 G T UNC79 Missense_Mutation p.K415N 0.09 tolerated(0.18) probably_damaging(0.998) TCGA-55-8096-01 15 101606941 101606941 G T LRRK1 Silent p.P1955P 0.27 TCGA-55-8096-01 15 24921732 24921732 C A NPAP1 Missense_Mutation p.P240T 0.29 tolerated(1) benign(0.093) TCGA-55-8096-01 15 24921733 24921733 C A NPAP1 Missense_Mutation p.P240H 0.29 deleterious(0.05) probably_damaging(0.978) TCGA-55-8096-01 15 41037425 41037425 T A RMDN3 Missense_Mutation p.E186V 0.11 deleterious(0) possibly_damaging(0.733) TCGA-55-8096-01 15 52485976 52485976 G A MYO5C 3'UTR 0.20 TCGA-55-8096-01 15 72338223 72338223 G A MYO9A Nonsense_Mutation p.Q228* 0.11 TCGA-55-8096-01 15 79327546 79327546 G T RASGRF1 Silent p.T295T 0.14 TCGA-55-8096-01 16 14982982 14982982 C A NOMO1 Silent p.L1118L 0.07 TCGA-55-8096-01 16 20432607 20432607 G A ACSM5 Missense_Mutation p.M217I 0.07 tolerated(0.28) benign(0.002) TCGA-55-8096-01 16 2258335 2258335 C T MLST8 Missense_Mutation p.T233M 0.07 tolerated(0.07) probably_damaging(0.932) TCGA-55-8096-01 16 50659416 50659416 C A NKD1 Silent p.S129S 0.12 TCGA-55-8096-01 16 57490459 57490459 A G COQ9 Missense_Mutation p.D141G 0.26 tolerated(1) benign(0.002) TCGA-55-8096-01 16 75512743 75512743 G A CHST6 Silent p.N328N 0.15 TCGA-55-8096-01 16 84089675 84089675 C A MBTPS1 Missense_Mutation p.R966L 0.19 tolerated_low_confidence(0.08) benign(0.001) TCGA-55-8096-01 16 87870252 87870252 C A SLC7A5 Missense_Mutation p.C381F 0.23 deleterious(0) possibly_damaging(0.722) TCGA-55-8096-01 17 38548934 38548934 C G TOP2A Missense_Mutation p.K1289N 0.15 deleterious(0.05) benign(0.005) TCGA-55-8096-01 17 49371270 49371270 C G UTP18 Missense_Mutation p.L504V 0.07 tolerated(0.1) benign(0.138) TCGA-55-8096-01 17 65026879 65026879 G A CACNG4 Missense_Mutation p.R248K 0.34 deleterious(0.04) benign(0.144) TCGA-55-8096-01 17 7574012 7574012 C A TP53 Nonsense_Mutation p.E339* 0.22 TCGA-55-8096-01 18 19429241 19429241 G T MIB1 Missense_Mutation p.K826N 0.06 tolerated(0.31) probably_damaging(0.997) TCGA-55-8096-01 18 29493475 29493475 T C TRAPPC8 Missense_Mutation p.I210V 0.33 tolerated(1) benign(0.001) TCGA-55-8096-01 19 11303852 11303852 C A KANK2 Nonsense_Mutation p.E302* 0.17 TCGA-55-8096-01 19 11687316 11687316 T A ACP5 Silent p.T159T 0.09 TCGA-55-8096-01 19 12907867 12907867 G A PRDX2 3'UTR 0.17 TCGA-55-8096-01 19 22836767 22836767 G T ZNF492 Missense_Mutation p.G27V 0.10 deleterious(0.03) probably_damaging(0.972) TCGA-55-8096-01 19 52538153 52538153 G C ZNF432 Missense_Mutation p.S260C 0.05 deleterious(0.01) benign(0.037) TCGA-55-8096-01 19 54201697 54201697 G T MIR523 RNA 0.26 TCGA-55-8096-01 19 55450747 55450747 G T NLRP7 Nonsense_Mutation p.Y480* 0.20 TCGA-55-8096-01 19 56104103 56104103 C G FIZ1 Missense_Mutation p.E402Q 0.09 tolerated(0.52) benign(0.021) TCGA-55-8096-01 19 56166500 56166500 G T U2AF2 Missense_Mutation p.Q10H 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.635) TCGA-55-8096-01 19 56166501 56166501 C T U2AF2 Missense_Mutation p.L11F 0.08 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-55-8096-01 19 56249556 56249556 T A NLRP9 Missense_Mutation p.H62L 0.26 deleterious(0.05) possibly_damaging(0.791) TCGA-55-8096-01 19 56561914 56561914 G A NLRP5 Missense_Mutation p.E1030K 0.07 tolerated(0.1) possibly_damaging(0.833) TCGA-55-8096-01 19 57335025 57335025 G T PEG3 Silent p.T139T 0.18 TCGA-55-8096-01 19 6903938 6903938 C G EMR1 Missense_Mutation p.T260R 0.11 tolerated(0.27) benign(0.02) TCGA-55-8096-01 19 9084154 9084154 G T MUC16 Missense_Mutation p.S2554Y 0.09 unknown(0) TCGA-55-8096-01 19 9091606 9091606 G A MUC16 Missense_Mutation p.S70L 0.14 unknown(0) TCGA-55-8096-01 1 100329996 100329996 G T AGL Missense_Mutation p.C172F 0.18 deleterious(0.01) benign(0.281) TCGA-55-8096-01 1 109897003 109897003 C A SORT1 Missense_Mutation p.A232S 0.07 tolerated(0.08) benign(0.219) TCGA-55-8096-01 1 11769352 11769352 C T DRAXIN Missense_Mutation p.P158S 0.25 deleterious(0.01) probably_damaging(1) TCGA-55-8096-01 1 11772462 11772462 G A DRAXIN Missense_Mutation p.D275N 0.14 tolerated(0.06) benign(0.043) TCGA-55-8096-01 1 153641006 153641006 G C ILF2 Missense_Mutation p.P46A 0.07 tolerated(0.1) benign(0.275) TCGA-55-8096-01 1 154098868 154098868 G T NUP210L Nonsense_Mutation p.Y419* 0.07 TCGA-55-8096-01 1 156021524 156021524 A T UBQLN4 Missense_Mutation p.V78D 0.17 deleterious(0.01) unknown(0) TCGA-55-8096-01 1 160808808 160808808 G T CD244 Silent p.I234I 0.11 TCGA-55-8096-01 1 160811112 160811112 G T CD244 Missense_Mutation p.D186E 0.20 tolerated(1) benign(0) TCGA-55-8096-01 1 175097242 175097242 C T TNN Silent p.S1040S 0.10 TCGA-55-8096-01 1 179363129 179363129 A C AXDND1 Missense_Mutation p.I319L 0.16 tolerated(0.05) benign(0.394) TCGA-55-8096-01 1 183938417 183938417 G C COLGALT2 Missense_Mutation p.S273C 0.11 deleterious(0) possibly_damaging(0.832) TCGA-55-8096-01 1 198608396 198608396 G A PTPRC 5'UTR 0.07 TCGA-55-8096-01 1 204985460 204985460 G T NFASC Missense_Mutation p.Q1172H 0.06 deleterious(0) unknown(0) TCGA-55-8096-01 1 218036183 218036183 G C SPATA17 Missense_Mutation p.G358A 0.06 tolerated(0.06) possibly_damaging(0.614) TCGA-55-8096-01 1 237754118 237754118 G T RYR2 Missense_Mutation p.G1329V 0.22 benign(0.004) TCGA-55-8096-01 1 240601428 240601428 G A FMN2 Missense_Mutation p.A1660T 0.17 benign(0.127) TCGA-55-8096-01 1 24424450 24424450 G C MYOM3 Missense_Mutation p.H236Q 0.22 tolerated(0.1) benign(0.252) TCGA-55-8096-01 1 248039575 248039575 G C TRIM58 Missense_Mutation p.L415F 0.14 deleterious(0) probably_damaging(0.996) TCGA-55-8096-01 1 42905682 42905682 C T ZMYND12 Missense_Mutation p.V147I 0.23 tolerated(0.23) benign(0.002) TCGA-55-8096-01 1 86342844 86342844 C A COL24A1 Silent p.L997L 0.18 TCGA-55-8096-01 1 89448433 89448433 T A RBMXL1 Silent p.S359S 0.24 TCGA-55-8096-01 1 98015119 98015119 T A DPYD Silent p.V507V 0.20 TCGA-55-8096-01 20 6025215 6025215 C G LRRN4 Silent p.T324T 0.12 TCGA-55-8096-01 20 8862309 8862309 A G PLCB1 Missense_Mutation p.K1155R 0.36 tolerated(0.52) benign(0.004) TCGA-55-8096-01 21 22881276 22881276 C A NCAM2 Missense_Mutation p.Q728K 0.11 tolerated(1) benign(0.08) TCGA-55-8096-01 21 28302244 28302244 G T ADAMTS5 Missense_Mutation p.S729Y 0.24 deleterious(0) possibly_damaging(0.526) TCGA-55-8096-01 21 32639182 32639182 G A TIAM1 Missense_Mutation p.T36M 0.16 deleterious_low_confidence(0) benign(0.068) TCGA-55-8096-01 21 34011346 34011351 GCTCTT - SYNJ1 In_Frame_Del p.Q1300_E1301del 0.08 TCGA-55-8096-01 21 46011439 46011439 G A KRTAP10-6 Silent p.H309H 0.25 TCGA-55-8096-01 22 32009156 32009156 C T SFI1 Missense_Mutation p.A840V 0.26 tolerated(0.07) possibly_damaging(0.732) TCGA-55-8096-01 22 50878172 50878172 C T PPP6R2 Missense_Mutation p.T698M 0.17 tolerated(0.21) benign(0.027) TCGA-55-8096-01 2 112601107 112601107 C T ANAPC1 Nonsense_Mutation p.W641* 0.28 TCGA-55-8096-01 2 178081321 178081321 G T HNRNPA3 Splice_Site p.X215_splice 0.07 TCGA-55-8096-01 2 179579037 179579037 C T TTN Missense_Mutation p.A8822T 0.10 TCGA-55-8096-01 2 232146846 232146846 G - ARMC9 Frame_Shift_Del 0.19 TCGA-55-8096-01 2 241534098 241534098 G A CAPN10 Silent p.E323E 0.24 TCGA-55-8096-01 2 48025765 48025765 G A MSH6 Missense_Mutation p.V215I 0.06 tolerated(0.26) benign(0.013) TCGA-55-8096-01 3 126741074 126741074 G T PLXNA1 Silent p.T1395T 0.13 TCGA-55-8096-01 3 142396905 142396905 A G PLS1 Missense_Mutation p.I177V 0.05 tolerated(0.08) benign(0.007) TCGA-55-8096-01 3 184090731 184090731 G T THPO Missense_Mutation p.A211D 0.13 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-55-8096-01 3 432804 432804 C A CHL1 Missense_Mutation p.P918H 0.09 deleterious(0) probably_damaging(1) TCGA-55-8096-01 3 72897456 72897456 C A SHQ1 Silent p.P12P 0.12 TCGA-55-8096-01 3 97983585 97983585 A T OR5H6 Missense_Mutation p.T153S 0.14 tolerated(1) benign(0.023) TCGA-55-8096-01 4 13616371 13616371 A G BOD1L1 Missense_Mutation p.I208T 0.18 probably_damaging(0.999) TCGA-55-8096-01 4 164449968 164449968 C A MARCH1 Missense_Mutation p.V268L 0.07 tolerated_low_confidence(0.68) benign(0.003) TCGA-55-8096-01 4 52779533 52779533 C T DCUN1D4 Silent p.L266L 0.19 TCGA-55-8096-01 4 79340120 79340120 G T FRAS1 Silent p.L1481L 0.22 TCGA-55-8096-01 4 81123265 81123265 C G PRDM8 Missense_Mutation p.Q217E 0.08 tolerated(0.39) benign(0.021) TCGA-55-8096-01 4 94376964 94376964 A T GRID2 Missense_Mutation p.D566V 0.31 deleterious(0) probably_damaging(0.984) TCGA-55-8096-01 5 140262054 140262054 G A PCDHA13 Silent p.A67A 0.21 TCGA-55-8096-01 5 176778294 176778294 T A LMAN2 Splice_Site p.X66_splice 0.15 TCGA-55-8096-01 5 32235101 32235101 G T MTMR12 Missense_Mutation p.F493L 0.16 tolerated(1) benign(0.261) TCGA-55-8096-01 5 35759701 35759701 G T SPEF2 Missense_Mutation p.R1167I 0.13 deleterious(0.04) benign(0.005) TCGA-55-8096-01 5 35904634 35904634 C A CAPSL 3'UTR 0.47 TCGA-55-8096-01 5 35904635 35904635 C A CAPSL 3'UTR 0.46 TCGA-55-8096-01 5 45267353 45267353 T C HCN1 Missense_Mutation p.I541V 0.11 deleterious(0.02) probably_damaging(0.96) TCGA-55-8096-01 6 146266716 146266716 G A SHPRH Missense_Mutation p.S460F 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-8096-01 6 30866958 30866958 G T DDR1 Missense_Mutation p.C882F 0.24 deleterious(0) probably_damaging(0.993) TCGA-55-8096-01 6 31903772 31903772 G C C2 Missense_Mutation p.V308L 0.23 tolerated(0.08) benign(0.33) TCGA-55-8096-01 6 56374667 56374667 T A DST Missense_Mutation p.H3639L 0.21 probably_damaging(0.948) TCGA-55-8096-01 7 100470331 100470331 G T TRIP6 Missense_Mutation p.D422Y 0.22 deleterious(0) probably_damaging(1) TCGA-55-8096-01 7 102967069 102967069 C G DNAJC2 Missense_Mutation p.D165H 0.10 deleterious(0) possibly_damaging(0.863) TCGA-55-8096-01 7 11450930 11450930 C G THSD7A Silent p.L1234L 0.11 TCGA-55-8096-01 7 28848987 28848987 G T CREB5 Nonsense_Mutation p.E404* 0.25 TCGA-55-8096-01 7 43548502 43548502 G T HECW1 Intron 0.20 TCGA-55-8096-01 7 55259515 55259515 T G EGFR Missense_Mutation p.L858R 0.46 deleterious(0) probably_damaging(1) TCGA-55-8096-01 7 75187519 75187519 C A HIP1 Missense_Mutation p.K472N 0.07 deleterious(0) probably_damaging(0.966) TCGA-55-8096-01 7 97821988 97821988 C T LMTK2 Silent p.S737S 0.18 TCGA-55-8096-01 8 113259343 113259343 C G CSMD3 Missense_Mutation p.Q3376H 0.10 tolerated(0.44) possibly_damaging(0.871) TCGA-55-8096-01 8 135612539 135612539 G T ZFAT Intron 0.11 TCGA-55-8096-01 8 2044089 2044089 G A MYOM2 Missense_Mutation p.V710I 0.09 tolerated(0.3) benign(0.109) TCGA-55-8096-01 8 22059403 22059403 G C BMP1 Missense_Mutation p.G732A 0.13 deleterious(0) probably_damaging(0.989) TCGA-55-8096-01 8 37729120 37729120 G C RAB11FIP1 Missense_Mutation p.P1067R 0.07 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-55-8096-01 8 70978618 70978618 T C PRDM14 Silent p.Q345Q 0.16 TCGA-55-8096-01 8 77766703 77766703 T A ZFHX4 Missense_Mutation p.F2516I 0.09 probably_damaging(0.974) TCGA-55-8096-01 8 77767654 77767654 G C ZFHX4 Missense_Mutation p.V2833L 0.10 benign(0.033) TCGA-55-8096-01 8 88885956 88885956 T A DCAF4L2 Missense_Mutation p.N82Y 0.10 deleterious(0.04) possibly_damaging(0.702) TCGA-55-8096-01 8 98718868 98718868 G T MTDH Missense_Mutation p.A388S 0.16 tolerated(0.11) benign(0.324) TCGA-55-8096-01 9 107266683 107266683 C A OR13F1 Missense_Mutation p.S47Y 0.10 tolerated(0.09) benign(0.393) TCGA-55-8096-01 9 80851322 80851322 A T CEP78 Missense_Mutation p.Y19F 0.36 deleterious(0.01) probably_damaging(0.987) TCGA-55-8096-01 9 8486032 8486032 C G PTPRD Missense_Mutation p.G929R 0.09 deleterious(0.01) possibly_damaging(0.506) TCGA-55-8096-01 X 100242379 100242379 G T ARL13A Nonsense_Mutation p.E163* 0.10 TCGA-55-8096-01 X 101581405 101581405 G T NXF2 Nonsense_Mutation p.E620* 0.13 TCGA-55-8096-01 X 105280470 105280470 G T SERPINA7 Missense_Mutation p.P194T 0.07 deleterious(0.02) benign(0.097) TCGA-55-8096-01 X 111078272 111078272 T A TRPC5 Missense_Mutation p.K591N 0.08 tolerated(0.17) benign(0.188) TCGA-55-8096-01 X 118797511 118797511 T C SEPT6 Missense_Mutation p.N92S 0.25 deleterious(0.03) benign(0.338) TCGA-55-8096-01 X 125685650 125685650 G T DCAF12L1 Nonsense_Mutation p.Y314* 0.21 TCGA-55-8096-01 X 129759318 129759318 G A ENOX2 Silent p.F601F 0.21 TCGA-55-8096-01 X 134156269 134156269 C G FAM127C Missense_Mutation p.G74A 0.07 tolerated(0.07) probably_damaging(0.997) TCGA-55-8096-01 X 134156270 134156270 C A FAM127C Missense_Mutation p.G74W 0.08 deleterious(0) probably_damaging(1) TCGA-55-8096-01 X 136113329 136113329 C T GPR101 Missense_Mutation p.G169S 0.06 deleterious(0.01) probably_damaging(0.966) TCGA-55-8096-01 X 147985783 147985783 T A AFF2 Silent p.P464P 0.07 TCGA-55-8096-01 X 148690455 148690455 C A TMEM185A Missense_Mutation p.L94F 0.24 deleterious(0) probably_damaging(0.976) TCGA-55-8096-01 X 149639428 149639428 G T MAMLD1 Missense_Mutation p.S503I 0.21 deleterious(0.01) probably_damaging(0.943) TCGA-55-8096-01 X 154490293 154490293 C A RAB39B Missense_Mutation p.G146V 0.09 deleterious(0) possibly_damaging(0.808) TCGA-55-8096-01 X 154743762 154743762 C A TMLHE Nonsense_Mutation p.E175* 0.06 TCGA-55-8096-01 X 30327114 30327114 C A NR0B1 Missense_Mutation p.G123W 0.33 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-55-8096-01 X 63412796 63412796 G A AMER1 Missense_Mutation p.P124L 0.08 tolerated(0.17) benign(0.01) TCGA-55-8096-01 X 68060199 68060199 G T EFNB1 Missense_Mutation p.C248F 0.08 deleterious(0) probably_damaging(0.998) TCGA-55-8097-01 10 104119162 104119162 G A GBF1 Missense_Mutation p.V383M 0.14 deleterious(0) probably_damaging(0.994) TCGA-55-8097-01 10 134909260 134909260 G A GPR123 Intron 0.30 TCGA-55-8097-01 10 60549467 60549467 A T BICC1 Missense_Mutation p.H274L 0.04 tolerated(0.87) possibly_damaging(0.594) TCGA-55-8097-01 10 84498364 84498364 G C NRG3 Missense_Mutation p.D329H 0.09 deleterious(0.01) probably_damaging(0.98) TCGA-55-8097-01 10 94821127 94821127 G A CYP26C1 Missense_Mutation p.R36H 0.20 tolerated(0.06) benign(0.045) TCGA-55-8097-01 10 98806497 98806497 G T SLIT1 Silent p.A589A 0.12 TCGA-55-8097-01 11 101374920 101374920 C G TRPC6 Missense_Mutation p.Q260H 0.16 tolerated(0.11) possibly_damaging(0.83) TCGA-55-8097-01 11 103014067 103014067 G T DYNC2H1 Missense_Mutation p.W882L 0.42 probably_damaging(0.99) TCGA-55-8097-01 11 107578641 107578641 G T SLN Silent p.R6R 0.27 TCGA-55-8097-01 11 111431276 111431276 G C LAYN 3'UTR 0.22 TCGA-55-8097-01 11 17432097 17432097 G T ABCC8 Missense_Mutation p.T887N 0.17 deleterious(0) probably_damaging(0.997) TCGA-55-8097-01 11 36057735 36057735 C T LDLRAD3 Silent p.I43I 0.30 TCGA-55-8097-01 11 62416099 62416099 A C INTS5 Missense_Mutation p.C485G 0.25 deleterious(0) probably_damaging(0.998) TCGA-55-8097-01 11 73914836 73914836 T C PPME1 Silent p.D55D 0.29 TCGA-55-8097-01 12 100043196 100043196 T A FAM71C 3'UTR 0.28 TCGA-55-8097-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.33 deleterious(0.04) probably_damaging(0.993) TCGA-55-8097-01 12 68052516 68052516 A T DYRK2 3'UTR 0.14 TCGA-55-8097-01 12 81101483 81101483 G T MYF6 5'UTR 0.24 TCGA-55-8097-01 12 85531678 85531678 G A LRRIQ1 Silent p.E1420E 0.25 TCGA-55-8097-01 13 103280210 103280210 A G TPP2 Missense_Mutation p.I318V 0.34 tolerated(0.22) benign(0.029) TCGA-55-8097-01 13 23929457 23929457 C T SACS Missense_Mutation p.E432K 0.32 benign(0.007) TCGA-55-8097-01 13 28896489 28896489 G A FLT1 Silent p.D987D 0.43 TCGA-55-8097-01 14 103416864 103416864 T C CDC42BPB Missense_Mutation p.K1083R 0.23 tolerated(0.14) benign(0.102) TCGA-55-8097-01 14 23884589 23884589 C T MYH7 Splice_Site p.X1761_splice 0.06 TCGA-55-8097-01 14 51230544 51230544 C A NIN Missense_Mutation p.G592W 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-55-8097-01 14 53518582 53518582 T G DDHD1 Missense_Mutation p.Q834P 0.35 tolerated(0.19) benign(0.313) TCGA-55-8097-01 14 55881108 55881108 T A TBPL2 Nonsense_Mutation p.K373* 0.13 TCGA-55-8097-01 14 74951146 74951147 - GG NPC2 Frame_Shift_Ins p.K112Tfs*5 0.28 TCGA-55-8097-01 14 95107178 95107178 G T SERPINA13P RNA 0.58 TCGA-55-8097-01 15 28493803 28493803 T A HERC2 Missense_Mutation p.S1044C 0.06 benign(0) TCGA-55-8097-01 15 42175664 42175664 C T SPTBN5 Missense_Mutation p.R514H 0.11 probably_damaging(0.998) TCGA-55-8097-01 16 30080641 30080641 C T ALDOA Silent p.P239P 0.16 TCGA-55-8097-01 16 3168975 3168975 G A ZNF205 Missense_Mutation p.R185Q 0.05 tolerated(0.39) benign(0.005) TCGA-55-8097-01 16 4245604 4245604 G T SRL Missense_Mutation p.T187N 0.25 tolerated(0.34) possibly_damaging(0.736) TCGA-55-8097-01 16 61760987 61760987 G A CDH8 Intron 0.13 TCGA-55-8097-01 16 67695394 67695394 G T PARD6A Missense_Mutation p.A34S 0.13 tolerated(1) benign(0.008) TCGA-55-8097-01 16 71957201 71957201 A G IST1 Missense_Mutation p.N270S 0.11 tolerated(0.8) unknown(0) TCGA-55-8097-01 16 88713578 88713578 G A CYBA Missense_Mutation p.A45V 0.05 tolerated(0.22) benign(0.352) TCGA-55-8097-01 17 32955647 32955647 C T TMEM132E Missense_Mutation p.T265I 0.14 tolerated(0.08) benign(0.025) TCGA-55-8097-01 17 72916368 72916368 C T USH1G Missense_Mutation p.R188H 0.16 tolerated(0.22) benign(0.003) TCGA-55-8097-01 17 8166274 8166274 G T PFAS Missense_Mutation p.R458M 0.20 deleterious(0) probably_damaging(1) TCGA-55-8097-01 18 15323273 15323273 G A RNU6-721P 5'Flank 0.14 TCGA-55-8097-01 18 40854275 40854275 C A SYT4 Missense_Mutation p.R40I 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-8097-01 19 31768026 31768026 C A TSHZ3 Missense_Mutation p.R891S 0.38 deleterious(0) probably_damaging(0.954) TCGA-55-8097-01 19 39976208 39976208 G A TIMM50 Missense_Mutation p.R216H 0.32 tolerated(0.13) probably_damaging(0.934) TCGA-55-8097-01 19 41903235 41903235 G A EXOSC5 5'UTR 0.30 TCGA-55-8097-01 19 48789256 48789256 T C ZNF114 Silent p.D125D 0.11 TCGA-55-8097-01 19 55285044 55285044 G C KIR2DL1 Missense_Mutation p.Q110H 0.14 deleterious(0.04) probably_damaging(0.966) TCGA-55-8097-01 19 56135825 56135825 G T ZNF784 Intron 0.12 TCGA-55-8097-01 1 11087510 11087510 C T MASP2 Missense_Mutation p.R498Q 0.05 tolerated(0.17) possibly_damaging(0.902) TCGA-55-8097-01 1 158644417 158644417 G A SPTA1 Silent p.N387N 0.14 TCGA-55-8097-01 1 158735726 158735726 G A OR6N1 Silent p.L249L 0.13 TCGA-55-8097-01 1 161697043 161697043 C T FCRLB Missense_Mutation p.P291L 0.19 tolerated(0.06) benign(0.001) TCGA-55-8097-01 1 170689004 170689004 C A PRRX1 Missense_Mutation p.L127I 0.14 deleterious(0.04) probably_damaging(0.987) TCGA-55-8097-01 1 175096157 175096157 C A TNN Missense_Mutation p.T994K 0.31 tolerated(0.07) benign(0.36) TCGA-55-8097-01 1 201054580 201054580 A C CACNA1S Silent p.V378V 0.30 TCGA-55-8097-01 1 220195819 220195819 C A EPRS Missense_Mutation p.G329W 0.30 deleterious(0) probably_damaging(0.999) TCGA-55-8097-01 1 237777543 237777543 G C RYR2 Silent p.L1705L 0.22 TCGA-55-8097-01 1 248201969 248201969 C T OR2L2 Missense_Mutation p.R134C 0.11 tolerated(0.1) benign(0.009) TCGA-55-8097-01 1 249142584 249142584 G C ZNF672 Missense_Mutation p.E371Q 0.37 tolerated(0.29) possibly_damaging(0.488) TCGA-55-8097-01 1 27089556 27089556 G T ARID1A Nonsense_Mutation p.G838* 0.36 TCGA-55-8097-01 1 37941169 37941169 C T ZC3H12A Silent p.D24D 0.27 TCGA-55-8097-01 1 42744310 42744310 A T FOXJ3 Silent p.S26S 0.11 TCGA-55-8097-01 1 55563660 55563660 G T USP24 Missense_Mutation p.L1851I 0.26 deleterious(0) probably_damaging(0.984) TCGA-55-8097-01 1 9713694 9713694 A G C1orf200 3'UTR 0.40 TCGA-55-8097-01 20 36627593 36627593 G A TTI1 Silent p.F930F 0.32 TCGA-55-8097-01 20 36627694 36627694 G - TTI1 Frame_Shift_Del p.Q897Sfs*64 0.11 TCGA-55-8097-01 21 11039214 11039214 T C BAGE2 RNA 0.03 TCGA-55-8097-01 21 47705160 47705160 G T MCM3AP Missense_Mutation p.A14D 0.11 deleterious(0.02) benign(0.146) TCGA-55-8097-01 22 39884776 39884776 C G MGAT3 Missense_Mutation p.A475G 0.12 tolerated(0.05) benign(0.105) TCGA-55-8097-01 22 43898634 43898634 G A MPPED1 Missense_Mutation p.E287K 0.13 deleterious(0) possibly_damaging(0.766) TCGA-55-8097-01 2 141122266 141122266 A T LRP1B Missense_Mutation p.C3699S 0.13 benign(0.415) TCGA-55-8097-01 2 179588858 179588858 G A TTN Missense_Mutation p.P7043L 0.11 TCGA-55-8097-01 2 188348883 188348883 G A TFPI Missense_Mutation p.T199I 0.12 tolerated(0.25) benign(0.027) TCGA-55-8097-01 2 27590448 27590448 T G EIF2B4 Intron 0.12 TCGA-55-8097-01 2 71206315 71206315 C A ANKRD53 Missense_Mutation p.R87S 0.11 tolerated(0.49) benign(0.003) TCGA-55-8097-01 2 77748929 77748929 A T LRRTM4 Intron 0.16 TCGA-55-8097-01 2 90139122 90139122 C A IGKV1D-16 Silent p.L6L 0.17 TCGA-55-8097-01 3 108218987 108218987 G A MYH15 Silent p.N178N 0.13 TCGA-55-8097-01 3 165547329 165547329 C A BCHE Missense_Mutation p.R498L 0.26 deleterious(0.03) benign(0.055) TCGA-55-8097-01 3 167247010 167247010 A G WDR49 Missense_Mutation p.S394P 0.32 deleterious(0) probably_damaging(0.996) TCGA-55-8097-01 3 183994343 183994343 G A ECE2 Intron 0.08 TCGA-55-8097-01 3 38812783 38812783 C T SCN10A Missense_Mutation p.V196I 0.27 tolerated(0.1) probably_damaging(0.927) TCGA-55-8097-01 3 77147419 77147419 G A ROBO2 Missense_Mutation p.G122R 0.31 deleterious(0) unknown(0) TCGA-55-8097-01 4 129012218 129012218 G T LARP1B Missense_Mutation p.G141C 0.30 deleterious(0) probably_damaging(0.987) TCGA-55-8097-01 4 140306134 140306134 T A NAA15 Splice_Site p.X768_splice 0.09 TCGA-55-8097-01 4 39322109 39322109 T G RFC1 Missense_Mutation p.Y330S 0.21 tolerated(0.47) benign(0.001) TCGA-55-8097-01 4 47680006 47680006 C T CORIN Missense_Mutation p.D400N 0.09 deleterious(0.05) probably_damaging(0.993) TCGA-55-8097-01 4 80954628 80954628 G A ANTXR2 Missense_Mutation p.T265M 0.19 tolerated(0.21) benign(0.003) TCGA-55-8097-01 5 140346470 140346470 C A PCDHAC2 Missense_Mutation p.A40E 0.20 deleterious(0.03) benign(0.002) TCGA-55-8097-01 5 153149964 153149964 G A GRIA1 Silent p.G763G 0.41 TCGA-55-8097-01 5 156533718 156533718 C A HAVCR2 Missense_Mutation p.S105I 0.31 deleterious(0) probably_damaging(0.99) TCGA-55-8097-01 5 161318052 161318052 C T GABRA1 Silent p.V284V 0.27 TCGA-55-8097-01 5 179674482 179674482 C T MAPK9 Missense_Mutation p.M215I 0.15 deleterious(0) possibly_damaging(0.56) TCGA-55-8097-01 5 23524611 23524611 G T PRDM9 Missense_Mutation p.W373C 0.23 deleterious(0.02) benign(0.206) TCGA-55-8097-01 5 34998787 34998787 T G AGXT2 3'UTR 0.17 TCGA-55-8097-01 5 40998260 40998260 C A MROH2B Missense_Mutation p.R1551L 0.29 tolerated(0.1) benign(0.168) TCGA-55-8097-01 5 54277902 54277902 C A ESM1 Missense_Mutation p.G125V 0.34 tolerated(0.22) benign(0) TCGA-55-8097-01 5 57913475 57913475 C A RAB3C Silent p.A10A 0.31 TCGA-55-8097-01 5 72189463 72189463 A - TNPO1 Frame_Shift_Del p.Q693Rfs*7 0.10 TCGA-55-8097-01 5 82834518 82834518 T C VCAN Missense_Mutation p.I1899T 0.26 tolerated(0.45) benign(0.01) TCGA-55-8097-01 6 129468151 129468151 C A LAMA2 Nonsense_Mutation p.C289* 0.41 TCGA-55-8097-01 6 130762768 130762768 G T TMEM200A Missense_Mutation p.D401Y 0.08 deleterious(0.03) possibly_damaging(0.518) TCGA-55-8097-01 6 144769869 144769869 A G UTRN Missense_Mutation p.K679R 0.32 tolerated(0.08) benign(0.076) TCGA-55-8097-01 6 148664269 148664269 G A SASH1 Silent p.E22E 0.25 TCGA-55-8097-01 6 159654545 159654545 G T FNDC1 Missense_Mutation p.A1001S 0.23 tolerated_low_confidence(0.19) unknown(0) TCGA-55-8097-01 6 162206908 162206908 C T PARK2 Missense_Mutation p.R256H 0.18 tolerated(0.08) probably_damaging(0.997) TCGA-55-8097-01 6 26225701 26225701 G T HIST1H3E Missense_Mutation p.D107Y 0.46 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-8097-01 6 32036612 32036612 G A TNXB Silent p.V1963V 0.05 TCGA-55-8097-01 6 47682675 47682675 C A GPR115 Missense_Mutation p.P565Q 0.26 deleterious(0) probably_damaging(1) TCGA-55-8097-01 6 74228479 74228479 T C EEF1A1 Silent p.P238P 0.32 TCGA-55-8097-01 6 74492422 74492422 T G CD109 Missense_Mutation p.S683R 0.12 tolerated(0.11) benign(0.092) TCGA-55-8097-01 7 108205008 108205009 AT - THAP5 Frame_Shift_Del p.I272Cfs*7 0.26 TCGA-55-8097-01 7 111387388 111387388 G - DOCK4 Frame_Shift_Del p.L1501* 0.25 TCGA-55-8097-01 7 23004031 23004031 T A FAM126A Intron 0.19 TCGA-55-8097-01 7 4172011 4172011 G A SDK1 Missense_Mutation p.R1395Q 0.15 deleterious(0.02) probably_damaging(0.943) TCGA-55-8097-01 7 93065384 93065384 C A CALCR Missense_Mutation p.K377N 0.26 deleterious(0) possibly_damaging(0.56) TCGA-55-8097-01 7 94041990 94041990 C T COL1A2 Missense_Mutation p.P500L 0.13 unknown(0) TCGA-55-8097-01 8 113484879 113484879 G - CSMD3 Frame_Shift_Del p.P1779Qfs*14 0.11 TCGA-55-8097-01 8 116616864 116616864 G A TRPS1 Silent p.T444T 0.06 TCGA-55-8097-01 8 52233423 52233423 C A PXDNL Missense_Mutation p.G1394V 0.11 tolerated(0.14) benign(0.055) TCGA-55-8097-01 8 77617480 77617480 C T ZFHX4 Missense_Mutation p.A386V 0.05 benign(0.006) TCGA-55-8097-01 9 103310129 103310129 A G TMEFF1 Missense_Mutation p.I222V 0.12 tolerated(0.28) benign(0.062) TCGA-55-8097-01 9 125391041 125391041 G A OR1B1 Silent p.Y258Y 0.31 TCGA-55-8097-01 9 14842398 14842398 C T FREM1 Missense_Mutation p.A552T 0.14 deleterious(0.02) benign(0.012) TCGA-55-8097-01 9 21385240 21385240 T C IFNA2 Missense_Mutation p.H30R 0.16 deleterious(0.01) probably_damaging(0.978) TCGA-55-8097-01 9 79936432 79936432 C G VPS13A Missense_Mutation p.S1867C 0.18 deleterious(0) possibly_damaging(0.469) TCGA-55-8097-01 9 93606334 93606334 G A SYK Missense_Mutation p.A52T 0.26 deleterious(0.01) benign(0.322) TCGA-55-8097-01 9 95841818 95841818 G T SUSD3 Missense_Mutation p.G164V 0.19 deleterious(0) possibly_damaging(0.857) TCGA-55-8097-01 X 102885086 102885086 G T TCEAL1 Missense_Mutation p.G81V 0.20 deleterious_low_confidence(0.04) benign(0.009) TCGA-55-8097-01 X 107975923 107975923 G C IRS4 Missense_Mutation p.R1218G 0.13 tolerated_low_confidence(0.14) unknown(0) TCGA-55-8097-01 X 110439768 110439768 G A PAK3 Missense_Mutation p.R472Q 0.14 deleterious(0) probably_damaging(0.994) TCGA-55-8097-01 X 119694234 119694234 A T CUL4B Missense_Mutation p.V105D 0.05 tolerated_low_confidence(0.06) benign(0.017) TCGA-55-8097-01 X 120181510 120181510 C A GLUD2 5'UTR 0.09 TCGA-55-8097-01 X 135292261 135292261 C G FHL1 3'UTR 0.08 TCGA-55-8097-01 X 153418558 153418558 C A OPN1LW Silent p.A185A 0.14 TCGA-55-8097-01 X 155003793 155003793 C T SPRY3 Missense_Mutation p.S87L 0.09 tolerated(0.22) benign(0.358) TCGA-55-8097-01 X 24761348 24761348 G A POLA1 Missense_Mutation p.G817E 0.12 tolerated(1) benign(0.014) TCGA-55-8097-01 X 299417 299417 G A PPP2R3B Missense_Mutation p.S500L 0.32 deleterious(0) benign(0.187) TCGA-55-8097-01 X 49854899 49854899 G A CLCN5 Missense_Mutation p.R624Q 0.14 deleterious(0.04) probably_damaging(0.988) TCGA-55-8097-01 X 51150097 51150097 A C CXorf67 Missense_Mutation p.I77L 0.15 deleterious(0.04) benign(0.028) TCGA-55-8097-01 X 53222721 53222721 C T KDM5C Silent p.E1405E 0.13 TCGA-55-8097-01 X 54099451 54099451 G - FAM120C 3'UTR 0.22 TCGA-55-8097-01 X 70764469 70764469 G A OGT Missense_Mutation p.R172H 0.14 tolerated(0.15) possibly_damaging(0.901) TCGA-55-8097-01 X 76854906 76854906 G T ATRX Missense_Mutation p.P1977H 0.30 possibly_damaging(0.827) TCGA-55-8097-01 X 77373665 77373665 C A PGK1 Silent p.G213G 0.24 TCGA-55-8203-01 10 104436612 104436612 T G ARL3 3'UTR 0.22 TCGA-55-8203-01 10 106983008 106983008 G T SORCS3 Splice_Site p.X956_splice 0.23 TCGA-55-8203-01 10 116060248 116060248 G T AFAP1L2 Missense_Mutation p.P582T 0.37 tolerated(0.15) benign(0.002) TCGA-55-8203-01 10 124377624 124377624 C A DMBT1 Silent p.T1532T 0.26 TCGA-55-8203-01 10 14987184 14987184 T A DCLRE1C Nonsense_Mutation p.K56* 0.27 TCGA-55-8203-01 10 16526540 16526540 G T PTER Missense_Mutation p.V53L 0.18 tolerated(0.27) benign(0.004) TCGA-55-8203-01 10 1779262 1779262 C A ADARB2 Missense_Mutation p.R28L 0.26 tolerated_low_confidence(0.08) probably_damaging(0.931) TCGA-55-8203-01 10 25464725 25464725 C A GPR158 Missense_Mutation p.L126M 0.23 tolerated(0.08) benign(0.133) TCGA-55-8203-01 10 26789819 26789819 G T APBB1IP Missense_Mutation p.A78S 0.24 deleterious(0.02) possibly_damaging(0.785) TCGA-55-8203-01 10 52619638 52619638 G A A1CF 5'UTR 0.05 TCGA-55-8203-01 10 55849794 55849794 T A PCDH15 Silent p.T649T 0.16 TCGA-55-8203-01 10 61956332 61956332 C T ANK3 Missense_Mutation p.A581T 0.24 possibly_damaging(0.639) TCGA-55-8203-01 10 68139071 68139071 G T CTNNA3 Missense_Mutation p.A524D 0.20 deleterious(0) unknown(0) TCGA-55-8203-01 10 76818170 76818170 T A DUPD1 Missense_Mutation p.T35S 0.22 deleterious(0.01) benign(0.306) TCGA-55-8203-01 10 95987179 95987179 C A PLCE1 Missense_Mutation p.N642K 0.08 deleterious(0) probably_damaging(1) TCGA-55-8203-01 11 104915260 104915260 G A CARD16 Missense_Mutation p.R45C 0.14 tolerated(0.27) benign(0.019) TCGA-55-8203-01 11 109294741 109294741 G T C11orf87 Nonsense_Mutation p.E128* 0.41 TCGA-55-8203-01 11 120996152 120996152 G T TECTA Missense_Mutation p.V449F 0.43 deleterious(0.01) benign(0.32) TCGA-55-8203-01 11 122968652 122968652 A T CLMP Missense_Mutation p.Y13N 0.47 tolerated(0.5) benign(0.001) TCGA-55-8203-01 11 19207884 19207884 G T CSRP3 Missense_Mutation p.P98Q 0.30 tolerated(0.13) benign(0.003) TCGA-55-8203-01 11 21581787 21581787 C A NELL1 Nonsense_Mutation p.C613* 0.23 TCGA-55-8203-01 11 33566894 33566894 C A KIAA1549L Missense_Mutation p.Q822K 0.25 tolerated(0.08) benign(0.043) TCGA-55-8203-01 11 35454341 35454341 C A PAMR1 Missense_Mutation p.V593F 0.22 deleterious(0) possibly_damaging(0.844) TCGA-55-8203-01 11 43511837 43511837 G T TTC17 Missense_Mutation p.V1027L 0.35 deleterious(0.01) probably_damaging(0.99) TCGA-55-8203-01 11 47193031 47193031 T C ARFGAP2 Missense_Mutation p.E296G 0.33 tolerated(0.26) probably_damaging(0.945) TCGA-55-8203-01 11 48510651 48510651 C A OR4A47 Missense_Mutation p.H103N 0.30 deleterious_low_confidence(0.01) probably_damaging(0.911) TCGA-55-8203-01 11 55036771 55036771 C G TRIM48 Missense_Mutation p.A211G 0.34 deleterious(0.02) possibly_damaging(0.453) TCGA-55-8203-01 11 55062962 55062962 G T TRIM51HP RNA 0.29 TCGA-55-8203-01 11 55433000 55433000 C A OR4C6 Missense_Mutation p.R120S 0.21 deleterious_low_confidence(0.01) benign(0.116) TCGA-55-8203-01 11 58275359 58275359 C A OR5B21 Missense_Mutation p.A74S 0.36 deleterious_low_confidence(0.03) probably_damaging(0.991) TCGA-55-8203-01 11 6008051 6008051 C G OR52L1 Missense_Mutation p.G37A 0.21 deleterious(0) probably_damaging(0.999) TCGA-55-8203-01 11 6023851 6023851 G C OR56A4 Missense_Mutation p.D176E 0.21 deleterious(0.01) possibly_damaging(0.519) TCGA-55-8203-01 11 6233027 6233027 C A FAM160A2 Missense_Mutation p.Q890H 0.34 tolerated(0.32) benign(0.009) TCGA-55-8203-01 11 62678152 62678152 G - CHRM1 Frame_Shift_Del p.R141Gfs*4 0.32 TCGA-55-8203-01 11 6291344 6291344 A T CCKBR Missense_Mutation p.S144C 0.26 deleterious(0) possibly_damaging(0.877) TCGA-55-8203-01 11 64360331 64360331 T A SLC22A12 Silent p.A161A 0.36 TCGA-55-8203-01 11 7063863 7063863 G T NLRP14 Missense_Mutation p.E202D 0.19 tolerated(0.28) benign(0.015) TCGA-55-8203-01 11 7111090 7111090 A T RBMXL2 Missense_Mutation p.S247C 0.29 deleterious(0) possibly_damaging(0.7) TCGA-55-8203-01 11 71238382 71238382 C T KRTAP5-7 Silent p.S12S 0.16 TCGA-55-8203-01 11 71668281 71668281 G A RNF121 Missense_Mutation p.M24I 0.37 tolerated(0.26) benign(0.001) TCGA-55-8203-01 11 7982583 7982583 G T NLRP10 Silent p.T192T 0.16 TCGA-55-8203-01 11 86013497 86013497 G T C11orf73 Missense_Mutation p.G3C 0.30 deleterious(0) probably_damaging(0.994) TCGA-55-8203-01 12 111342463 111342463 G C CCDC63 Missense_Mutation p.A472P 0.15 tolerated(0.22) benign(0.023) TCGA-55-8203-01 12 11214361 11214361 G A TAS2R46 Missense_Mutation p.T178M 0.29 deleterious(0.01) possibly_damaging(0.803) TCGA-55-8203-01 12 113826320 113826320 G T PLBD2 Silent p.T553T 0.25 TCGA-55-8203-01 12 113906984 113906984 C A LHX5 Missense_Mutation p.V114L 0.15 tolerated(0.11) benign(0.318) TCGA-55-8203-01 12 13243747 13243747 C T GSG1 Silent p.E18E 0.27 TCGA-55-8203-01 12 15722369 15722369 C G PTPRO Missense_Mutation p.D922E 0.23 deleterious(0.04) benign(0.012) TCGA-55-8203-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.17 deleterious(0.04) probably_damaging(0.993) TCGA-55-8203-01 12 53041550 53041550 C G KRT2 Missense_Mutation p.Q404H 0.29 deleterious(0) probably_damaging(0.999) TCGA-55-8203-01 12 53346414 53346414 G A KRT18 Intron 0.20 TCGA-55-8203-01 12 53587597 53587597 A T ITGB7 Missense_Mutation p.L466Q 0.26 deleterious(0) probably_damaging(0.981) TCGA-55-8203-01 12 54062982 54062982 A C ATP5G2 Silent p.S144S 0.27 TCGA-55-8203-01 12 56347927 56347927 C T PMEL 3'UTR 0.33 TCGA-55-8203-01 12 63544497 63544497 G A AVPR1A Silent p.G40G 0.32 TCGA-55-8203-01 12 66712429 66712429 G T HELB Missense_Mutation p.R671L 0.29 deleterious(0) possibly_damaging(0.876) TCGA-55-8203-01 12 68552024 68552024 C A IFNG Missense_Mutation p.D44Y 0.36 deleterious(0) possibly_damaging(0.744) TCGA-55-8203-01 12 6924037 6924037 C A CD4 Missense_Mutation p.N162K 0.23 tolerated(0.93) benign(0.009) TCGA-55-8203-01 12 71002973 71002973 C A PTPRB Missense_Mutation p.L285F 0.26 tolerated_low_confidence(0.71) benign(0.003) TCGA-55-8203-01 12 7586288 7586288 C A CD163L1 Nonsense_Mutation p.G43* 0.32 TCGA-55-8203-01 12 78513500 78513500 C A NAV3 Missense_Mutation p.T1175N 0.22 tolerated(0.1) benign(0.197) TCGA-55-8203-01 12 79689995 79689995 C A SYT1 Missense_Mutation p.F207L 0.23 deleterious(0) probably_damaging(0.986) TCGA-55-8203-01 12 79689996 79689996 A C SYT1 Missense_Mutation p.N208H 0.21 deleterious(0) probably_damaging(0.999) TCGA-55-8203-01 12 8048154 8048154 C A NANOGP1 RNA 0.21 TCGA-55-8203-01 12 81283072 81283072 G - LIN7A Frame_Shift_Del p.V56Cfs*21 0.10 TCGA-55-8203-01 12 9265053 9265053 C T A2M Missense_Mutation p.R117Q 0.23 deleterious(0.03) benign(0.009) TCGA-55-8203-01 13 109475582 109475582 C A MYO16 Silent p.P329P 0.19 TCGA-55-8203-01 13 110815875 110815875 G T COL4A1 Missense_Mutation p.P1395Q 0.39 benign(0.159) TCGA-55-8203-01 13 20207937 20207937 G A MPHOSPH8 Missense_Mutation p.A17T 0.11 tolerated_low_confidence(0.08) benign(0.039) TCGA-55-8203-01 13 33704181 33704181 C A STARD13 Missense_Mutation p.Q211H 0.13 tolerated(0.18) benign(0.001) TCGA-55-8203-01 13 39357301 39357301 G T FREM2 Missense_Mutation p.Q1912H 0.31 deleterious(0.03) benign(0.196) TCGA-55-8203-01 13 40297470 40297470 A T COG6 Missense_Mutation p.I529F 0.23 deleterious(0.03) probably_damaging(0.933) TCGA-55-8203-01 13 41705410 41705410 T C KBTBD6 Missense_Mutation p.N413S 0.30 deleterious(0) probably_damaging(0.979) TCGA-55-8203-01 13 48528647 48528647 T C SUCLA2 Missense_Mutation p.Y283C 0.32 deleterious(0) possibly_damaging(0.713) TCGA-55-8203-01 13 58299242 58299242 G T PCDH17 Missense_Mutation p.R1098S 0.15 tolerated_low_confidence(0.33) benign(0.001) TCGA-55-8203-01 13 67205366 67205366 C A PCDH9 Missense_Mutation p.D1106Y 0.29 deleterious(0) probably_damaging(0.993) TCGA-55-8203-01 13 72063270 72063270 C A DACH1 Silent p.P529P 0.22 TCGA-55-8203-01 13 78130760 78130760 C A SCEL Silent p.R25R 0.28 TCGA-55-8203-01 13 86369115 86369115 G T SLITRK6 Missense_Mutation p.T510N 0.15 deleterious(0.01) benign(0.173) TCGA-55-8203-01 14 101201086 101201086 C A DLK1 Silent p.S335S 0.30 TCGA-55-8203-01 14 103969433 103969433 G T MARK3 Missense_Mutation p.V711L 0.24 deleterious(0) probably_damaging(0.994) TCGA-55-8203-01 14 106610477 106610477 C A IGHV3-15 Nonsense_Mutation p.E65* 0.20 TCGA-55-8203-01 14 22090672 22090672 A T TRAV1-1 Missense_Mutation p.Q93L 0.38 tolerated(0.11) benign(0.026) TCGA-55-8203-01 14 22979963 22979963 C A TRAJ31 Missense_Mutation p.A5D 0.20 unknown(0) TCGA-55-8203-01 14 24108149 24108149 A T DHRS2 Missense_Mutation p.T26S 0.19 tolerated(0.85) benign(0.018) TCGA-55-8203-01 14 39722068 39722068 G T MIA2 Missense_Mutation p.A562S 0.20 tolerated(0.55) benign(0.089) TCGA-55-8203-01 14 50576393 50576393 C A VCPKMT 3'UTR 0.25 TCGA-55-8203-01 14 52192518 52192518 G C FRMD6 Missense_Mutation p.G505A 0.30 tolerated(0.58) benign(0.015) TCGA-55-8203-01 14 64460674 64460674 G T SYNE2 Missense_Mutation p.C923F 0.21 possibly_damaging(0.865) TCGA-55-8203-01 14 68249514 68249514 C T ZFYVE26 Missense_Mutation p.S1452N 0.28 deleterious(0.02) benign(0.266) TCGA-55-8203-01 14 73721605 73721605 G T PAPLN Silent p.S475S 0.25 TCGA-55-8203-01 14 78325441 78325441 G A ADCK1 Missense_Mutation p.R81H 0.04 deleterious(0.04) possibly_damaging(0.721) TCGA-55-8203-01 14 79111528 79111528 C A NRXN3 5'UTR 0.41 TCGA-55-8203-01 14 90770427 90770427 T C NRDE2 Missense_Mutation p.Q286R 0.23 tolerated(0.08) benign(0.003) TCGA-55-8203-01 14 95884188 95884188 C A SYNE3 Missense_Mutation p.R968L 0.37 deleterious(0) probably_damaging(0.982) TCGA-55-8203-01 15 20488784 20488784 G A CHEK2P2 RNA 0.07 TCGA-55-8203-01 15 25488705 25488705 G A SNORD115-40 5'Flank 0.18 TCGA-55-8203-01 15 28270017 28270017 G T OCA2 Missense_Mutation p.L183M 0.11 deleterious(0.05) benign(0.153) TCGA-55-8203-01 15 28538091 28538091 C A HERC2 Missense_Mutation p.A89S 0.35 benign(0) TCGA-55-8203-01 15 33895372 33895372 C A RYR3 Nonsense_Mutation p.Y657* 0.17 TCGA-55-8203-01 15 33938652 33938652 G A RYR3 Missense_Mutation p.R1289H 0.13 probably_damaging(0.939) TCGA-55-8203-01 15 42164514 42164514 C A SPTBN5 Missense_Mutation p.E1717D 0.09 possibly_damaging(0.648) TCGA-55-8203-01 15 50279673 50279673 C A ATP8B4 Missense_Mutation p.K221N 0.15 tolerated(0.11) possibly_damaging(0.688) TCGA-55-8203-01 15 74173742 74173742 G T TBC1D21 Silent p.V21V 0.17 TCGA-55-8203-01 15 74473702 74473702 T A STRA6 Missense_Mutation p.N579Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-8203-01 15 74708159 74708159 A T SEMA7A Silent p.G323G 0.27 TCGA-55-8203-01 15 82575098 82575098 G A FAM154B Missense_Mutation p.G298R 0.27 tolerated(0.35) benign(0.007) TCGA-55-8203-01 15 89381975 89381975 G A ACAN Missense_Mutation p.C51Y 0.15 deleterious(0) unknown(0) TCGA-55-8203-01 15 89388814 89388814 G - ACAN Frame_Shift_Del p.W377Cfs*21 0.15 TCGA-55-8203-01 15 89422412 89422412 C A HAPLN3 Silent p.V194V 0.13 TCGA-55-8203-01 16 15221895 15221895 C T RP11-1186N24.5 RNA 0.27 TCGA-55-8203-01 16 16225669 16225669 A T ABCC1 Silent p.T1281T 0.16 TCGA-55-8203-01 16 20396128 20396128 C A PDILT Missense_Mutation p.G83V 0.22 tolerated(0.07) probably_damaging(0.996) TCGA-55-8203-01 16 2569624 2569624 G T ATP6V0C Missense_Mutation p.A116S 0.40 tolerated(0.09) benign(0.307) TCGA-55-8203-01 16 30771695 30771695 C T C16orf93 Missense_Mutation p.A127T 0.30 tolerated(0.52) benign(0.055) TCGA-55-8203-01 16 31095090 31095090 T G PRSS53 3'UTR 0.33 TCGA-55-8203-01 16 31734625 31734625 G T ZNF720 Missense_Mutation p.R59S 0.21 tolerated(0.45) benign(0.014) TCGA-55-8203-01 16 3493134 3493134 G A ZNF597 Missense_Mutation p.T7M 0.27 deleterious_low_confidence(0) possibly_damaging(0.513) TCGA-55-8203-01 16 46633784 46633784 C G SHCBP1 Missense_Mutation p.G435A 0.16 deleterious(0.01) benign(0.03) TCGA-55-8203-01 16 58709954 58709954 T A SLC38A7 Missense_Mutation p.H258L 0.21 deleterious(0) probably_damaging(1) TCGA-55-8203-01 16 67863681 67863681 G A CENPT Silent p.A391A 0.25 TCGA-55-8203-01 16 71065546 71065546 G A HYDIN Intron 0.29 TCGA-55-8203-01 16 7568297 7568297 C A RBFOX1 Missense_Mutation p.P79H 0.25 deleterious(0) possibly_damaging(0.885) TCGA-55-8203-01 16 9857926 9857926 G A GRIN2A Missense_Mutation p.R1159C 0.10 deleterious(0) possibly_damaging(0.893) TCGA-55-8203-01 16 9858029 9858029 C T GRIN2A Silent p.K1124K 0.30 TCGA-55-8203-01 17 10318895 10318895 C A MYH8 Missense_Mutation p.G181V 0.23 deleterious(0) probably_damaging(0.995) TCGA-55-8203-01 17 10428111 10428111 G T MYH2 Missense_Mutation p.A1645D 0.21 deleterious(0.03) benign(0.061) TCGA-55-8203-01 17 10535299 10535299 C A MYH3 Missense_Mutation p.G1664V 0.18 tolerated(0.31) benign(0.001) TCGA-55-8203-01 17 19705218 19705218 C A ULK2 Missense_Mutation p.R438M 0.24 deleterious(0.05) possibly_damaging(0.886) TCGA-55-8203-01 17 27493073 27493073 T C MYO18A Missense_Mutation p.I296V 0.29 deleterious(0.03) probably_damaging(0.959) TCGA-55-8203-01 17 29283366 29283366 C T ADAP2 Silent p.L330L 0.17 TCGA-55-8203-01 17 2995604 2995604 G C OR1D2 Silent p.P229P 0.35 TCGA-55-8203-01 17 38640796 38640796 C A TNS4 Missense_Mutation p.G481C 0.12 deleterious(0) probably_damaging(1) TCGA-55-8203-01 17 47688725 47688725 C G SPOP Missense_Mutation p.G192A 0.21 tolerated(0.47) benign(0.002) TCGA-55-8203-01 17 48680441 48680441 C T CACNA1G Silent p.D1350D 0.04 TCGA-55-8203-01 17 5009460 5009461 TA - ZNF232 Nonsense_Mutation p.Y331* 0.16 TCGA-55-8203-01 17 5042761 5042761 G C USP6 Missense_Mutation p.Q430H 0.20 deleterious_low_confidence(0.01) benign(0.216) TCGA-55-8203-01 17 61950681 61950681 A G CSH2 Missense_Mutation p.L10P 0.08 deleterious(0) probably_damaging(0.956) TCGA-55-8203-01 17 63545648 63545648 C G AXIN2 Missense_Mutation p.D316H 0.19 deleterious(0) probably_damaging(0.999) TCGA-55-8203-01 17 65665684 65665684 G T PITPNC1 Missense_Mutation p.D175Y 0.19 deleterious(0) benign(0.36) TCGA-55-8203-01 17 65716058 65716058 G T NOL11 Missense_Mutation p.D98Y 0.18 deleterious(0) probably_damaging(0.982) TCGA-55-8203-01 17 67150045 67150045 T C ABCA10 Missense_Mutation p.M1298V 0.21 tolerated(1) benign(0) TCGA-55-8203-01 17 6978335 6978335 C T CLEC10A 3'UTR 0.26 TCGA-55-8203-01 17 70117512 70117512 C - SOX9 5'UTR 0.23 TCGA-55-8203-01 17 72768373 72768373 G A NAT9 Silent p.L126L 0.24 TCGA-55-8203-01 17 72955008 72955008 T A HID1 Nonsense_Mutation p.K383* 0.27 TCGA-55-8203-01 17 73539528 73539528 A T LLGL2 Silent p.P7P 0.23 TCGA-55-8203-01 17 80319925 80319925 C T TEX19 5'UTR 0.43 TCGA-55-8203-01 18 12817351 12817351 C A PTPN2 Missense_Mutation p.R170I 0.25 deleterious(0) probably_damaging(0.998) TCGA-55-8203-01 18 28956922 28956922 G T DSG4 Missense_Mutation p.M16I 0.37 tolerated(0.2) benign(0.013) TCGA-55-8203-01 18 29867896 29867908 GGGTGCTAAATCT - GAREM Frame_Shift_Del p.R218Efs*26 0.20 TCGA-55-8203-01 18 43207004 43207004 G C SLC14A2 Missense_Mutation p.G138A 0.20 deleterious(0) probably_damaging(1) TCGA-55-8203-01 18 46808504 46808504 T A DYM Missense_Mutation p.I330F 0.28 tolerated(0.25) benign(0.245) TCGA-55-8203-01 18 46808540 46808540 T A DYM Missense_Mutation p.S318C 0.35 tolerated(0.09) benign(0.01) TCGA-55-8203-01 18 48575062 48575062 G T SMAD4 Missense_Mutation p.G86C 0.21 deleterious(0) probably_damaging(1) TCGA-55-8203-01 18 54814994 54814994 G T BOD1L2 Missense_Mutation p.A151S 0.25 tolerated(0.27) benign(0.257) TCGA-55-8203-01 18 60646012 60646012 G C PHLPP1 Missense_Mutation p.G1501A 0.21 tolerated(0.78) benign(0.005) TCGA-55-8203-01 18 61223490 61223490 T C SERPINB12 Missense_Mutation p.L33P 0.08 deleterious(0) probably_damaging(0.998) TCGA-55-8203-01 18 61223491 61223491 G C SERPINB12 Silent p.L33L 0.08 TCGA-55-8203-01 18 63477136 63477136 A T CDH7 Missense_Mutation p.E136V 0.19 deleterious(0) probably_damaging(0.958) TCGA-55-8203-01 18 7231580 7231580 G A LRRC30 Silent p.S148S 0.12 TCGA-55-8203-01 19 10578180 10578180 C G PDE4A Silent p.A848A 0.35 TCGA-55-8203-01 19 1207078 1207078 G T STK11 Missense_Mutation p.G56W 0.45 deleterious(0) probably_damaging(1) TCGA-55-8203-01 19 13470426 13470426 G T CACNA1A Silent p.L324L 0.22 TCGA-55-8203-01 19 14208238 14208238 C A PRKACA Missense_Mutation p.A234S 0.27 tolerated(0.12) possibly_damaging(0.867) TCGA-55-8203-01 19 14288458 14288458 T A LPHN1 Missense_Mutation p.M57L 0.16 deleterious(0.05) benign(0.023) TCGA-55-8203-01 19 17837202 17837202 G T MAP1S Missense_Mutation p.V337L 0.44 deleterious(0.01) possibly_damaging(0.503) TCGA-55-8203-01 19 19651072 19651072 G C CILP2 Missense_Mutation p.E75Q 0.17 deleterious(0) probably_damaging(1) TCGA-55-8203-01 19 2438518 2438518 C A LMNB2 Missense_Mutation p.R138M 0.29 deleterious(0) probably_damaging(0.919) TCGA-55-8203-01 19 31039763 31039763 G A ZNF536 Missense_Mutation p.M1079I 0.32 tolerated_low_confidence(0.49) benign(0) TCGA-55-8203-01 19 31768748 31768748 C T TSHZ3 Missense_Mutation p.G651R 0.18 tolerated(0.25) possibly_damaging(0.617) TCGA-55-8203-01 19 35500182 35500182 G T GRAMD1A Silent p.G56G 0.34 TCGA-55-8203-01 19 35657168 35657168 C A FXYD5 Silent p.R143R 0.22 TCGA-55-8203-01 19 35832688 35832688 G T CD22 Missense_Mutation p.D619Y 0.19 deleterious(0) probably_damaging(0.997) TCGA-55-8203-01 19 41029501 41029501 T C SPTBN4 Missense_Mutation p.I1271T 0.34 tolerated(0.06) benign(0.021) TCGA-55-8203-01 19 42866301 42866301 G A MEGF8 Missense_Mutation p.R1860H 0.53 deleterious(0.01) probably_damaging(0.921) TCGA-55-8203-01 19 42873083 42873083 C T MEGF8 Silent p.N2123N 0.13 TCGA-55-8203-01 19 43375970 43375970 G T PSG1 Silent p.R220R 0.15 TCGA-55-8203-01 19 49671235 49671235 G T TRPM4 Missense_Mutation p.W110L 0.14 deleterious(0) possibly_damaging(0.831) TCGA-55-8203-01 19 50154691 50154691 C T SCAF1 Missense_Mutation p.R349C 0.21 unknown(0) TCGA-55-8203-01 19 52497146 52497146 T C ZNF615 Missense_Mutation p.T406A 0.20 deleterious(0.01) benign(0.037) TCGA-55-8203-01 19 52714572 52714572 G T PPP2R1A Missense_Mutation p.E110D 0.23 tolerated(0.14) benign(0.001) TCGA-55-8203-01 19 53762215 53762215 C A VN1R2 Missense_Mutation p.S196Y 0.12 deleterious(0.02) possibly_damaging(0.845) TCGA-55-8203-01 19 53762244 53762244 C A VN1R2 Missense_Mutation p.P206T 0.39 tolerated(0.06) possibly_damaging(0.722) TCGA-55-8203-01 19 53770284 53770284 C A VN1R4 Missense_Mutation p.R212L 0.21 deleterious(0.01) benign(0.354) TCGA-55-8203-01 19 54742915 54742915 C - LILRA6 Frame_Shift_Del p.A454Qfs*64 0.18 TCGA-55-8203-01 19 55146621 55146621 T A LILRB1 Missense_Mutation p.L518Q 0.19 deleterious(0.04) benign(0.219) TCGA-55-8203-01 19 55715189 55715189 C A PTPRH Nonsense_Mutation p.G283* 0.15 TCGA-55-8203-01 19 57051028 57051028 G C ZFP28 Missense_Mutation p.E81D 0.20 tolerated(0.22) benign(0.002) TCGA-55-8203-01 19 58420128 58420128 C G ZNF417 Silent p.A506A 0.30 TCGA-55-8203-01 19 6988821 6988821 C A EMR4P RNA 0.32 TCGA-55-8203-01 19 9085906 9085906 G T MUC16 Missense_Mutation p.P1970Q 0.18 unknown(0) TCGA-55-8203-01 1 101198174 101198174 G T VCAM1 Missense_Mutation p.V576F 0.26 deleterious(0.02) benign(0.281) TCGA-55-8203-01 1 10383941 10383941 G T KIF1B Splice_Site p.X741_splice 0.18 TCGA-55-8203-01 1 109649724 109649724 G A C1orf194 Silent p.D61D 0.27 TCGA-55-8203-01 1 110766455 110766455 G T KCNC4 Silent p.R516R 0.29 TCGA-55-8203-01 1 12414217 12414217 G A VPS13D Silent p.T3206T 0.08 TCGA-55-8203-01 1 147380414 147380414 C T GJA8 Missense_Mutation p.A111V 0.17 tolerated(0.1) benign(0.01) TCGA-55-8203-01 1 149885315 149885315 C A SV2A Silent p.A26A 0.21 TCGA-55-8203-01 1 152127816 152127816 G T RPTN Missense_Mutation p.Q587K 0.09 deleterious(0.02) benign(0.017) TCGA-55-8203-01 1 154293696 154293696 G T AQP10 Missense_Mutation p.R22L 0.29 deleterious(0) probably_damaging(0.967) TCGA-55-8203-01 1 157491068 157491068 G A FCRL5 Missense_Mutation p.P752S 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-8203-01 1 159023409 159023409 A T IFI16 Silent p.T668T 0.39 TCGA-55-8203-01 1 160106794 160106794 G T ATP1A2 Missense_Mutation p.R938L 0.27 deleterious(0.01) benign(0.246) TCGA-55-8203-01 1 169511332 169511332 G A F5 Missense_Mutation p.P999L 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.813) TCGA-55-8203-01 1 169572267 169572267 C A SELP Nonsense_Mutation p.E568* 0.36 TCGA-55-8203-01 1 172633496 172633496 A G FASLG Silent p.E139E 0.38 TCGA-55-8203-01 1 17725322 17725322 G A PADI6 RNA 0.08 TCGA-55-8203-01 1 178410734 178410734 G C RASAL2 Missense_Mutation p.E293D 0.27 deleterious(0) benign(0.442) TCGA-55-8203-01 1 179090797 179090797 T A ABL2 Missense_Mutation p.Q298L 0.26 deleterious(0) probably_damaging(0.998) TCGA-55-8203-01 1 179887219 179887219 A T TOR1AIP1 Nonsense_Mutation p.R533* 0.35 TCGA-55-8203-01 1 190067320 190067320 A C BRINP3 Missense_Mutation p.V710G 0.21 deleterious(0) possibly_damaging(0.767) TCGA-55-8203-01 1 193091296 193091296 G T CDC73 5'UTR 0.50 TCGA-55-8203-01 1 197396937 197396937 G A CRB1 Missense_Mutation p.D828N 0.32 tolerated(0.09) benign(0.058) TCGA-55-8203-01 1 198721821 198721821 C A PTPRC Silent p.V1143V 0.26 TCGA-55-8203-01 1 20417116 20417116 C T PLA2G5 Silent p.Y116Y 0.35 TCGA-55-8203-01 1 204380590 204380590 G C PPP1R15B 5'UTR 0.21 TCGA-55-8203-01 1 207649630 207649630 G T CR2 Missense_Mutation p.G923V 0.28 tolerated(0.06) possibly_damaging(0.523) TCGA-55-8203-01 1 207803918 207803918 G A CR1 Missense_Mutation p.G2470D 0.29 tolerated_low_confidence(0.81) benign(0.042) TCGA-55-8203-01 1 225598013 225598013 C A LBR Missense_Mutation p.V432L 0.30 tolerated(0.37) benign(0.143) TCGA-55-8203-01 1 228112027 228112027 C G WNT9A Missense_Mutation p.A143P 0.36 deleterious(0.02) probably_damaging(0.991) TCGA-55-8203-01 1 228471312 228471312 G T OBSCN Missense_Mutation p.R3378L 0.36 possibly_damaging(0.717) TCGA-55-8203-01 1 237038125 237038125 T A MTR Missense_Mutation p.I858N 0.10 deleterious(0) probably_damaging(1) TCGA-55-8203-01 1 237778129 237778129 C A RYR2 Missense_Mutation p.P1901T 0.40 benign(0.297) TCGA-55-8203-01 1 237791261 237791261 G T RYR2 Silent p.T2107T 0.25 TCGA-55-8203-01 1 238048463 238048463 A T ZP4 Splice_Site p.X437_splice 0.17 TCGA-55-8203-01 1 238053229 238053229 C T ZP4 Missense_Mutation p.G113D 0.18 tolerated(1) benign(0.001) TCGA-55-8203-01 1 240656703 240656703 G T GREM2 Silent p.R25R 0.20 TCGA-55-8203-01 1 242161881 242161881 C A MAP1LC3C Silent p.P52P 0.22 TCGA-55-8203-01 1 2444349 2444349 A C PANK4 Missense_Mutation p.W569G 0.32 deleterious(0) probably_damaging(0.999) TCGA-55-8203-01 1 247068885 247068885 C G AHCTF1 Missense_Mutation p.R289P 0.21 deleterious(0) probably_damaging(0.965) TCGA-55-8203-01 1 247752214 247752214 C G OR2G2 Missense_Mutation p.P185A 0.08 deleterious(0) probably_damaging(0.986) TCGA-55-8203-01 1 247875769 247875769 A G OR6F1 Missense_Mutation p.C97R 0.27 deleterious(0) probably_damaging(0.999) TCGA-55-8203-01 1 248263605 248263605 C A OR2L13 Missense_Mutation p.L310M 0.25 tolerated_low_confidence(0.31) benign(0.003) TCGA-55-8203-01 1 248685327 248685327 G T OR2G6 Missense_Mutation p.C127F 0.25 deleterious(0) probably_damaging(0.992) TCGA-55-8203-01 1 25599000 25599000 C A RHD 5'UTR 0.21 TCGA-55-8203-01 1 32713255 32713255 C T FAM167B Missense_Mutation p.S78F 0.09 deleterious(0) benign(0.241) TCGA-55-8203-01 1 46476544 46476544 G T MAST2 Missense_Mutation p.R374L 0.25 deleterious_low_confidence(0.04) benign(0.341) TCGA-55-8203-01 1 9019038 9019038 G T CA6 Missense_Mutation p.A160S 0.17 deleterious(0.02) probably_damaging(0.954) TCGA-55-8203-01 1 9098009 9098009 T C SLC2A5 Missense_Mutation p.S417G 0.25 deleterious(0.05) benign(0.113) TCGA-55-8203-01 1 9107740 9107740 A C SLC2A5 Missense_Mutation p.M116R 0.11 deleterious(0) probably_damaging(0.999) TCGA-55-8203-01 1 99767302 99767302 C T LPPR4 Missense_Mutation p.T272M 0.22 deleterious(0) probably_damaging(0.99) TCGA-55-8203-01 20 21687575 21687575 C G PAX1 Silent p.P262P 0.20 TCGA-55-8203-01 20 23017300 23017300 C A SSTR4 3'UTR 0.32 TCGA-55-8203-01 20 2464392 2464392 C A ZNF343 Silent p.G405G 0.22 TCGA-55-8203-01 20 26084307 26084307 C A NCOR1P1 Intron 0.22 TCGA-55-8203-01 20 36640118 36640118 C A TTI1 Missense_Mutation p.G701W 0.16 deleterious(0) possibly_damaging(0.908) TCGA-55-8203-01 20 44641964 44641964 C G MMP9 Silent p.V467V 0.18 TCGA-55-8203-01 20 44664062 44664062 C A SLC12A5 Missense_Mutation p.P79H 0.24 deleterious(0) probably_damaging(1) TCGA-55-8203-01 20 44856203 44856203 C A CDH22 Missense_Mutation p.R205L 0.29 deleterious(0) probably_damaging(0.943) TCGA-55-8203-01 20 60714836 60714836 C T PSMA7 Splice_Site p.X116_splice 0.31 TCGA-55-8203-01 20 61453472 61453472 G A COL9A3 Missense_Mutation p.G145R 0.27 deleterious(0) unknown(0) TCGA-55-8203-01 20 61453473 61453473 G T COL9A3 Missense_Mutation p.G145V 0.24 deleterious(0) unknown(0) TCGA-55-8203-01 20 61537357 61537357 T A DIDO1 Missense_Mutation p.E490D 0.21 benign(0.022) TCGA-55-8203-01 21 11029610 11029610 C A BAGE2 RNA 0.06 TCGA-55-8203-01 21 22910226 22910226 T C NCAM2 Missense_Mutation p.I821T 0.38 tolerated(0.13) benign(0.23) TCGA-55-8203-01 21 31538937 31538937 G - CLDN17 5'UTR 0.15 TCGA-55-8203-01 21 33371376 33371376 G A HUNK Missense_Mutation p.R675H 0.08 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-55-8203-01 21 34957030 34957030 G T DONSON Missense_Mutation p.S217R 0.26 deleterious(0) possibly_damaging(0.817) TCGA-55-8203-01 21 43905839 43905839 C A RSPH1 Missense_Mutation p.E147D 0.37 tolerated(0.21) benign(0.037) TCGA-55-8203-01 22 19707724 19707724 A T SEPT5 Missense_Mutation p.T109S 0.19 deleterious(0) possibly_damaging(0.877) TCGA-55-8203-01 22 22697764 22697764 C T IGLV9-49 Missense_Mutation p.L18F 0.17 tolerated(0.27) probably_damaging(0.986) TCGA-55-8203-01 22 22842827 22842827 C A ZNF280B Silent p.P299P 0.14 TCGA-55-8203-01 22 23404056 23404056 T A RTDR1 Nonsense_Mutation p.K241* 0.27 TCGA-55-8203-01 22 25601330 25601330 G A CRYBB3 Splice_Site p.X157_splice 0.10 TCGA-55-8203-01 22 30824457 30824457 A T MTFP1 Missense_Mutation p.D146V 0.15 deleterious(0) probably_damaging(0.954) TCGA-55-8203-01 22 37407367 37407367 C A TST Splice_Site p.X199_splice 0.26 TCGA-55-8203-01 2 11300801 11300801 G T PQLC3 Missense_Mutation p.A93S 0.27 tolerated(0.28) benign(0.352) TCGA-55-8203-01 2 128066328 128066328 G T MAP3K2 Silent p.I489I 0.12 TCGA-55-8203-01 2 130949368 130949368 T C TUBA3E 3'UTR 0.11 TCGA-55-8203-01 2 130949369 130949369 A G TUBA3E 3'UTR 0.11 TCGA-55-8203-01 2 132110650 132110650 G C AC073869.2 RNA 0.19 TCGA-55-8203-01 2 132240470 132240470 C T TUBA3D 3'UTR 0.25 TCGA-55-8203-01 2 136473252 136473252 G T R3HDM1 Missense_Mutation p.V922F 0.18 tolerated(0.16) benign(0.1) TCGA-55-8203-01 2 141108483 141108483 C - LRP1B Frame_Shift_Del p.M3926Wfs*9 0.22 TCGA-55-8203-01 2 141214133 141214133 C A LRP1B Missense_Mutation p.S3285I 0.42 benign(0.403) TCGA-55-8203-01 2 141526835 141526835 G C LRP1B Missense_Mutation p.A1902G 0.20 benign(0.364) TCGA-55-8203-01 2 141665468 141665468 G A LRP1B Silent p.G1166G 0.20 TCGA-55-8203-01 2 144276912 144276912 A C ARHGAP15 Missense_Mutation p.I302L 0.36 tolerated(0.19) benign(0.053) TCGA-55-8203-01 2 149247298 149247298 C T MBD5 Missense_Mutation p.P1133L 0.20 deleterious_low_confidence(0) unknown(0) TCGA-55-8203-01 2 152476249 152476249 G C NEB Missense_Mutation p.Q3530E 0.17 probably_damaging(0.996) TCGA-55-8203-01 2 158177958 158177958 G T ERMN Missense_Mutation p.P240Q 0.34 deleterious(0) probably_damaging(1) TCGA-55-8203-01 2 158962622 158962622 T C UPP2 Missense_Mutation p.V82A 0.35 deleterious(0.02) possibly_damaging(0.581) TCGA-55-8203-01 2 162273093 162273093 G T TBR1 Missense_Mutation p.G58W 0.18 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-55-8203-01 2 178362494 178362494 G T AGPS Splice_Site p.X454_splice 0.38 TCGA-55-8203-01 2 179438168 179438168 C A TTN Missense_Mutation p.V24231L 0.21 TCGA-55-8203-01 2 179443955 179443955 G A TTN Missense_Mutation p.S22601L 0.19 TCGA-55-8203-01 2 179542447 179542447 C A TTN Missense_Mutation p.V11398F 0.33 TCGA-55-8203-01 2 179566271 179566271 T A TTN Missense_Mutation p.R10194S 0.40 TCGA-55-8203-01 2 179610952 179610952 G A TTN Intron 0.32 TCGA-55-8203-01 2 182543431 182543431 G A NEUROD1 Silent p.L53L 0.47 TCGA-55-8203-01 2 183104954 183104954 C G PDE1A Missense_Mutation p.R94P 0.35 deleterious(0) probably_damaging(1) TCGA-55-8203-01 2 185801290 185801290 G T ZNF804A Missense_Mutation p.E389D 0.37 tolerated(0.1) benign(0.237) TCGA-55-8203-01 2 204824311 204824311 G T ICOS Missense_Mutation p.V197L 0.13 tolerated_low_confidence(0.23) benign(0.006) TCGA-55-8203-01 2 204824313 204824313 G T ICOS Silent p.V197V 0.13 TCGA-55-8203-01 2 21225921 21225921 C A APOB Missense_Mutation p.D4125Y 0.20 benign(0.087) TCGA-55-8203-01 2 230914552 230914552 T A SLC16A14 Missense_Mutation p.N110Y 0.30 deleterious(0.03) possibly_damaging(0.794) TCGA-55-8203-01 2 234879068 234879068 C G TRPM8 Missense_Mutation p.Q785E 0.28 deleterious(0.01) probably_damaging(0.963) TCGA-55-8203-01 2 241569925 241569925 G T GPR35 Missense_Mutation p.V217L 0.22 deleterious(0.04) benign(0.128) TCGA-55-8203-01 2 24991296 24991296 C A NCOA1 3'UTR 0.25 TCGA-55-8203-01 2 26700586 26700586 A T OTOF Missense_Mutation p.I749N 0.29 deleterious(0.03) benign(0.197) TCGA-55-8203-01 2 30748531 30748531 G T LCLAT1 Silent p.L63L 0.32 TCGA-55-8203-01 2 40366616 40366616 G - SLC8A1 Frame_Shift_Del p.H824Tfs*8 0.20 TCGA-55-8203-01 2 43547623 43547623 G A THADA Missense_Mutation p.T1467I 0.32 deleterious(0.01) benign(0.04) TCGA-55-8203-01 2 45829187 45829187 C A SRBD1 Missense_Mutation p.S39I 0.35 deleterious_low_confidence(0.01) benign(0.157) TCGA-55-8203-01 2 71044180 71044180 C T CLEC4F Missense_Mutation p.M111I 0.21 tolerated(0.18) benign(0.007) TCGA-55-8203-01 2 80782913 80782913 C T CTNNA2 Missense_Mutation p.R546W 0.28 deleterious(0) probably_damaging(0.996) TCGA-55-8203-01 2 85576623 85576623 C T RETSAT Missense_Mutation p.G294E 0.23 deleterious(0) probably_damaging(0.978) TCGA-55-8203-01 2 89476605 89476605 G A IGKV2-24 Missense_Mutation p.L4F 0.23 tolerated(0.05) benign(0.112) TCGA-55-8203-01 2 90078155 90078155 G C IGKV3D-20 Silent p.A64A 0.29 TCGA-55-8203-01 2 97530493 97530493 T C SEMA4C Missense_Mutation p.Q304R 0.29 tolerated(0.5) benign(0.002) TCGA-55-8203-01 3 100621500 100621500 C A ABI3BP Missense_Mutation p.R104L 0.12 deleterious(0) benign(0.25) TCGA-55-8203-01 3 10400407 10400407 C A ATP2B2 Missense_Mutation p.V702L 0.19 tolerated(0.1) probably_damaging(0.998) TCGA-55-8203-01 3 112064051 112064051 C A CD200 Missense_Mutation p.L138M 0.35 tolerated(0.47) benign(0.281) TCGA-55-8203-01 3 114014665 114014665 C T TIGIT Missense_Mutation p.T112I 0.30 deleterious(0.03) probably_damaging(0.954) TCGA-55-8203-01 3 120998722 120998722 G T STXBP5L Missense_Mutation p.G677W 0.36 deleterious(0) probably_damaging(0.985) TCGA-55-8203-01 3 130285792 130285792 G C COL6A6 Missense_Mutation p.G510A 0.08 tolerated(0.11) probably_damaging(0.94) TCGA-55-8203-01 3 136676949 136676949 C T IL20RB 5'UTR 0.32 TCGA-55-8203-01 3 13860788 13860788 C A WNT7A Missense_Mutation p.A235S 0.18 tolerated(0.11) possibly_damaging(0.718) TCGA-55-8203-01 3 14559366 14559366 G A GRIP2 RNA 0.31 TCGA-55-8203-01 3 186335029 186335029 C T AHSG Silent p.L155L 0.35 TCGA-55-8203-01 3 193130049 193130049 C T ATP13A4 Nonsense_Mutation p.W1042* 0.34 TCGA-55-8203-01 3 19921078 19921078 C A EFHB 3'UTR 0.21 TCGA-55-8203-01 3 2777967 2777967 G A CNTN4 Missense_Mutation p.E42K 0.21 tolerated(0.57) benign(0.015) TCGA-55-8203-01 3 35770889 35770889 T C ARPP21 Silent p.A406A 0.15 TCGA-55-8203-01 3 38622764 38622764 G T SCN5A Silent p.A962A 0.29 TCGA-55-8203-01 3 386357 386357 G A CHL1 Silent p.G271G 0.18 TCGA-55-8203-01 3 436553 436553 G T CHL1 Missense_Mutation p.G1031V 0.24 deleterious(0.05) possibly_damaging(0.885) TCGA-55-8203-01 3 44952588 44952588 C T TGM4 Missense_Mutation p.T582M 0.30 tolerated(0.46) benign(0) TCGA-55-8203-01 3 45077404 45077404 C A CLEC3B Missense_Mutation p.F199L 0.28 deleterious(0) probably_damaging(1) TCGA-55-8203-01 3 47814359 47814359 T A SMARCC1 Missense_Mutation p.Q88L 0.26 deleterious(0) possibly_damaging(0.598) TCGA-55-8203-01 3 51126673 51126673 G C DOCK3 Splice_Site p.X184_splice 0.22 TCGA-55-8203-01 3 67054705 67054705 G T KBTBD8 Missense_Mutation p.E438D 0.26 tolerated(0.09) possibly_damaging(0.593) TCGA-55-8203-01 3 93617365 93617365 T A PROS1 Missense_Mutation p.Y259F 0.08 tolerated(0.5) benign(0.006) TCGA-55-8203-01 3 97124081 97124081 G T EPHA6 Missense_Mutation p.G565V 0.42 deleterious(0) benign(0.228) TCGA-55-8203-01 4 100212093 100212093 G T ADH1A 5'UTR 0.20 TCGA-55-8203-01 4 106156190 106156190 G T TET2 Missense_Mutation p.G364V 0.24 tolerated(0.06) benign(0.01) TCGA-55-8203-01 4 119952569 119952569 A T SYNPO2 Missense_Mutation p.Q880L 0.09 deleterious(0) probably_damaging(0.976) TCGA-55-8203-01 4 123193363 123193363 A T KIAA1109 Missense_Mutation p.E2750V 0.38 probably_damaging(0.996) TCGA-55-8203-01 4 128807073 128807073 C G PLK4 Missense_Mutation p.A183G 0.10 deleterious(0) probably_damaging(0.999) TCGA-55-8203-01 4 151504255 151504255 C A MAB21L2 Missense_Mutation p.A25E 0.17 tolerated(0.88) benign(0.081) TCGA-55-8203-01 4 164534510 164534510 G T MARCH1 Missense_Mutation p.S66R 0.36 tolerated(0.06) benign(0.035) TCGA-55-8203-01 4 187004836 187004836 A G TLR3 Missense_Mutation p.T666A 0.26 tolerated(0.42) benign(0.007) TCGA-55-8203-01 4 26483241 26483241 T C CCKAR 3'UTR 0.28 TCGA-55-8203-01 4 2831520 2831520 G T SH3BP2 Missense_Mutation p.C353F 0.27 deleterious_low_confidence(0.05) probably_damaging(0.935) TCGA-55-8203-01 4 30724581 30724581 C A PCDH7 Missense_Mutation p.P513T 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-55-8203-01 4 54324957 54324957 G T FIP1L1 Missense_Mutation p.S546I 0.32 deleterious(0) probably_damaging(0.988) TCGA-55-8203-01 4 55961097 55961097 C A KDR Missense_Mutation p.G948V 0.19 tolerated(0.55) benign(0.072) TCGA-55-8203-01 4 6107524 6107524 C T JAKMIP1 Silent p.A100A 0.19 TCGA-55-8203-01 4 84026147 84026147 A T PLAC8 Missense_Mutation p.C49S 0.13 deleterious(0.04) probably_damaging(0.997) TCGA-55-8203-01 4 8621068 8621068 C A CPZ Silent p.V561V 0.18 TCGA-55-8203-01 4 90857595 90857595 A G MMRN1 Missense_Mutation p.K922E 0.23 tolerated(0.06) probably_damaging(0.997) TCGA-55-8203-01 4 94690475 94690475 C A GRID2 Silent p.A825A 0.12 TCGA-55-8203-01 4 9784506 9784506 C A DRD5 Missense_Mutation p.R285S 0.30 deleterious(0) possibly_damaging(0.664) TCGA-55-8203-01 5 102891701 102891702 - A NUDT12 Frame_Shift_Ins p.K299* 0.18 TCGA-55-8203-01 5 112770510 112770510 T A TSSK1B Silent p.R9R 0.11 TCGA-55-8203-01 5 124036777 124036777 C A ZNF608 Missense_Mutation p.E364D 0.23 tolerated(0.06) possibly_damaging(0.55) TCGA-55-8203-01 5 127503459 127503459 G T SLC12A2 Missense_Mutation p.G875C 0.17 deleterious(0) possibly_damaging(0.882) TCGA-55-8203-01 5 127597566 127597566 C - FBN2 Frame_Shift_Del p.Q2743Sfs*52 0.14 TCGA-55-8203-01 5 127624914 127624914 A C FBN2 Missense_Mutation p.I2181S 0.26 deleterious(0) possibly_damaging(0.589) TCGA-55-8203-01 5 127647596 127647596 G T FBN2 Silent p.P1643P 0.13 TCGA-55-8203-01 5 129520708 129520708 G A CHSY3 Missense_Mutation p.V625I 0.11 tolerated(0.32) benign(0.28) TCGA-55-8203-01 5 135283148 135283148 A T LECT2 Missense_Mutation p.Y110N 0.26 deleterious(0.01) probably_damaging(0.921) TCGA-55-8203-01 5 140182917 140182917 T A PCDHA3 Missense_Mutation p.V712E 0.17 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-55-8203-01 5 14489022 14489022 G T TRIO Intron 0.50 TCGA-55-8203-01 5 147286025 147286025 G T C5orf46 Missense_Mutation p.L14M 0.31 deleterious(0.02) unknown(0) TCGA-55-8203-01 5 149276334 149276334 G T PDE6A Silent p.T471T 0.19 TCGA-55-8203-01 5 149360182 149360182 A T SLC26A2 Silent p.A342A 0.24 TCGA-55-8203-01 5 154396717 154396717 G T KIF4B Missense_Mutation p.G1100W 0.12 deleterious(0) probably_damaging(0.996) TCGA-55-8203-01 5 154396718 154396718 G T KIF4B Missense_Mutation p.G1100V 0.13 tolerated(0.09) probably_damaging(0.96) TCGA-55-8203-01 5 167379677 167379677 C A TENM2 Missense_Mutation p.S266Y 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-8203-01 5 16764426 16764426 C T MYO10 Missense_Mutation p.R420K 0.20 tolerated(0.63) probably_damaging(0.987) TCGA-55-8203-01 5 167671538 167671538 C A TENM2 Silent p.R1878R 0.17 TCGA-55-8203-01 5 176297417 176297417 G T UNC5A Silent p.L256L 0.14 TCGA-55-8203-01 5 176297418 176297418 G T UNC5A Missense_Mutation p.D257Y 0.16 deleterious(0) possibly_damaging(0.907) TCGA-55-8203-01 5 177690296 177690296 C A COL23A1 Silent p.G184G 0.41 TCGA-55-8203-01 5 19571711 19571711 A T CDH18 Silent p.P410P 0.28 TCGA-55-8203-01 5 21755941 21755941 C A CDH12 Silent p.A548A 0.21 TCGA-55-8203-01 5 23522872 23522872 C A PRDM9 Missense_Mutation p.P254T 0.08 deleterious(0) possibly_damaging(0.584) TCGA-55-8203-01 5 23527465 23527465 C A PRDM9 Silent p.G756G 0.15 TCGA-55-8203-01 5 26885905 26885905 G T CDH9 Missense_Mutation p.P567Q 0.38 deleterious(0) probably_damaging(1) TCGA-55-8203-01 5 26885906 26885906 G T CDH9 Missense_Mutation p.P567T 0.36 deleterious(0) probably_damaging(0.999) TCGA-55-8203-01 5 33546166 33546166 G T ADAMTS12 Missense_Mutation p.L1482M 0.31 tolerated(0.09) probably_damaging(0.94) TCGA-55-8203-01 5 33624404 33624404 C A ADAMTS12 Missense_Mutation p.G692V 0.17 deleterious(0) probably_damaging(1) TCGA-55-8203-01 5 33951584 33951584 C A SLC45A2 Intron 0.33 TCGA-55-8203-01 5 35965662 35965662 G T UGT3A1 Missense_Mutation p.N223K 0.14 tolerated(0.25) benign(0.072) TCGA-55-8203-01 5 37180279 37180279 C G C5orf42 Missense_Mutation p.M1859I 0.20 tolerated(0.27) benign(0.009) TCGA-55-8203-01 5 45262384 45262384 G T HCN1 Missense_Mutation p.T771K 0.44 deleterious_low_confidence(0.01) benign(0.141) TCGA-55-8203-01 5 45645616 45645616 G T HCN1 Missense_Mutation p.P174T 0.15 tolerated(0.11) benign(0.005) TCGA-55-8203-01 5 50683378 50683378 C A ISL1 Missense_Mutation p.F91L 0.13 tolerated(0.75) benign(0.02) TCGA-55-8203-01 5 60188896 60188896 C A ERCC8 Intron 0.36 TCGA-55-8203-01 5 63257442 63257442 G T HTR1A Nonsense_Mutation p.Y35* 0.26 TCGA-55-8203-01 5 67593402 67593402 C T PIK3R1 Silent p.Y716Y 0.35 TCGA-55-8203-01 5 68662327 68662327 T C TAF9 Intron 0.28 TCGA-55-8203-01 5 75913449 75913449 C G F2RL2 Missense_Mutation p.M361I 0.20 tolerated(0.09) benign(0.138) TCGA-55-8203-01 5 75919025 75919025 G T F2RL2 Missense_Mutation p.L11I 0.16 tolerated(0.11) benign(0.001) TCGA-55-8203-01 6 10874994 10874994 C G GCM2 Missense_Mutation p.G252A 0.19 tolerated(0.11) benign(0.11) TCGA-55-8203-01 6 136599512 136599512 A T BCLAF1 Silent p.A169A 0.12 TCGA-55-8203-01 6 146708032 146708032 C A GRM1 Silent p.R537R 0.25 TCGA-55-8203-01 6 169648752 169648752 C G THBS2 Silent p.T123T 0.28 TCGA-55-8203-01 6 29274852 29274852 A C OR14J1 Missense_Mutation p.H129P 0.24 deleterious(0) benign(0.323) TCGA-55-8203-01 6 29274875 29274875 C A OR14J1 Missense_Mutation p.R137S 0.26 tolerated(0.47) benign(0.007) TCGA-55-8203-01 6 29577145 29577145 G A GABBR1 Missense_Mutation p.P574S 0.32 deleterious(0.02) possibly_damaging(0.685) TCGA-55-8203-01 6 31601266 31601266 A G PRRC2A Missense_Mutation p.Q1477R 0.10 unknown(0) TCGA-55-8203-01 6 32011570 32011570 C T TNXB Missense_Mutation p.R258Q 0.30 deleterious(0.04) probably_damaging(0.998) TCGA-55-8203-01 6 41000739 41000739 T A UNC5CL Missense_Mutation p.Q278L 0.35 deleterious(0) benign(0.074) TCGA-55-8203-01 6 51897848 51897848 C T PKHD1 Missense_Mutation p.R1115K 0.14 deleterious(0.04) probably_damaging(0.913) TCGA-55-8203-01 6 56494059 56494059 C A DST Missense_Mutation p.Q951H 0.15 probably_damaging(0.999) TCGA-55-8203-01 6 64004924 64004924 C A LGSN Missense_Mutation p.E19D 0.30 tolerated_low_confidence(0.36) benign(0.003) TCGA-55-8203-01 6 70071380 70071380 A T BAI3 Silent p.S1405S 0.43 TCGA-55-8203-01 6 70916886 70916886 C A COL19A1 Missense_Mutation p.P1113T 0.37 deleterious(0.01) probably_damaging(0.982) TCGA-55-8203-01 6 83823062 83823062 A T DOPEY1 Silent p.S234S 0.40 TCGA-55-8203-01 6 88854124 88854124 G A CNR1 Silent p.I290I 0.17 TCGA-55-8203-01 7 103191669 103191669 C G RELN Silent p.A2049A 0.18 TCGA-55-8203-01 7 108213735 108213735 A T DNAJB9 Missense_Mutation p.R204W 0.26 deleterious(0) probably_damaging(0.999) TCGA-55-8203-01 7 113518030 113518030 G T PPP1R3A Nonsense_Mutation p.Y1039* 0.27 TCGA-55-8203-01 7 113518823 113518823 G C PPP1R3A Missense_Mutation p.P775R 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-55-8203-01 7 119915700 119915700 C T KCND2 Silent p.F338F 0.07 TCGA-55-8203-01 7 123508357 123508357 G T HYAL4 Missense_Mutation p.K10N 0.26 deleterious_low_confidence(0.04) benign(0.012) TCGA-55-8203-01 7 138554431 138554431 C A KIAA1549 Missense_Mutation p.G1543V 0.28 deleterious(0) probably_damaging(1) TCGA-55-8203-01 7 140125719 140125719 G T RAB19 Silent p.L141L 0.21 TCGA-55-8203-01 7 142643378 142643378 G A KEL Silent p.C410C 0.34 TCGA-55-8203-01 7 149504024 149504024 C T SSPO RNA 0.27 TCGA-55-8203-01 7 154143392 154143392 T A DPP6 Missense_Mutation p.S113T 0.21 deleterious(0) probably_damaging(0.998) TCGA-55-8203-01 7 154863040 154863040 C A HTR5A Missense_Mutation p.T144K 0.23 deleterious(0.01) possibly_damaging(0.591) TCGA-55-8203-01 7 20782591 20782591 G T ABCB5 Missense_Mutation p.S1039I 0.21 deleterious(0.02) benign(0.012) TCGA-55-8203-01 7 27238953 27238953 G A HOXA13 Silent p.G248G 0.15 TCGA-55-8203-01 7 34917799 34917799 G T NPSR1 3'UTR 0.36 TCGA-55-8203-01 7 44152247 44152247 T A AEBP1 Missense_Mutation p.S770T 0.14 tolerated(0.26) benign(0.349) TCGA-55-8203-01 7 47968930 47968930 G C PKD1L1 Missense_Mutation p.R311G 0.25 tolerated(0.06) benign(0.008) TCGA-55-8203-01 7 48311668 48311668 G A ABCA13 Nonsense_Mutation p.W802* 0.22 TCGA-55-8203-01 7 51095939 51095939 C T COBL Missense_Mutation p.G952R 0.28 tolerated(0.53) benign(0.003) TCGA-55-8203-01 7 51096453 51096453 C G COBL Silent p.L780L 0.39 TCGA-55-8203-01 7 55750479 55750479 C A RNU6-389P 5'Flank 0.16 TCGA-55-8203-01 7 75692874 75692874 C T MDH2 Silent p.G199G 0.24 TCGA-55-8203-01 7 81355295 81355295 G T HGF Missense_Mutation p.S360Y 0.32 deleterious(0.01) benign(0.347) TCGA-55-8203-01 7 87183173 87183173 A G ABCB1 Silent p.A301A 0.30 TCGA-55-8203-01 7 98528436 98528436 A G TRRAP Missense_Mutation p.M1192V 0.36 benign(0.258) TCGA-55-8203-01 7 99473882 99473882 T A OR2AE1 Missense_Mutation p.M259L 0.23 tolerated(0.1) benign(0.11) TCGA-55-8203-01 7 99972004 99972004 A T PILRA Silent p.S134S 0.24 TCGA-55-8203-01 8 104922378 104922378 C G RIMS2 Missense_Mutation p.N547K 0.20 tolerated_low_confidence(0.14) benign(0.087) TCGA-55-8203-01 8 108315533 108315533 G T ANGPT1 Missense_Mutation p.Q291K 0.18 tolerated(0.91) benign(0.047) TCGA-55-8203-01 8 110451322 110451322 G T PKHD1L1 Splice_Site p.X1319_splice 0.31 TCGA-55-8203-01 8 110505897 110505897 G T PKHD1L1 Missense_Mutation p.R3415I 0.14 deleterious(0.04) benign(0.155) TCGA-55-8203-01 8 120596199 120596199 T A ENPP2 Intron 0.22 TCGA-55-8203-01 8 122627197 122627197 G T HAS2 Missense_Mutation p.Q271K 0.42 deleterious(0) probably_damaging(0.999) TCGA-55-8203-01 8 14095111 14095111 C G SGCZ Missense_Mutation p.Q138H 0.27 deleterious(0) possibly_damaging(0.855) TCGA-55-8203-01 8 24365030 24365030 C A ADAM7 Missense_Mutation p.P749H 0.23 tolerated_low_confidence(0.07) possibly_damaging(0.844) TCGA-55-8203-01 8 24775285 24775285 C A NEFM Silent p.G639G 0.22 TCGA-55-8203-01 8 2796233 2796233 A T CSMD1 Silent p.A3523A 0.38 TCGA-55-8203-01 8 3046476 3046476 G T CSMD1 Missense_Mutation p.P1819H 0.24 probably_damaging(1) TCGA-55-8203-01 8 32585533 32585533 G T NRG1 Missense_Mutation p.C190F 0.19 deleterious(0) probably_damaging(0.999) TCGA-55-8203-01 8 3263564 3263564 C T CSMD1 Missense_Mutation p.V751M 0.34 probably_damaging(1) TCGA-55-8203-01 8 55538036 55538036 G T RP1 Nonsense_Mutation p.E532* 0.24 TCGA-55-8203-01 8 71556476 71556476 A C LACTB2 Missense_Mutation p.V139G 0.18 deleterious(0) possibly_damaging(0.865) TCGA-55-8203-01 8 88885420 88885420 G C DCAF4L2 Missense_Mutation p.S260R 0.18 tolerated(0.48) benign(0.001) TCGA-55-8203-01 8 89128822 89128822 G T MMP16 Missense_Mutation p.P333T 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-55-8203-01 8 97892089 97892089 G T CPQ Silent p.T235T 0.36 TCGA-55-8203-01 8 99440748 99440748 G A KCNS2 Missense_Mutation p.G181S 0.21 tolerated(0.25) probably_damaging(0.998) TCGA-55-8203-01 9 103340821 103340821 G C MURC Silent p.V132V 0.12 TCGA-55-8203-01 9 103340822 103340822 G T MURC Missense_Mutation p.V133L 0.12 tolerated(0.32) probably_damaging(0.998) TCGA-55-8203-01 9 109689688 109689688 C T ZNF462 Silent p.G1165G 0.17 TCGA-55-8203-01 9 117816 117816 G A FOXD4 Missense_Mutation p.P102S 0.22 tolerated(0.08) benign(0.044) TCGA-55-8203-01 9 120476267 120476267 C A TLR4 Missense_Mutation p.L621M 0.36 tolerated(0.07) probably_damaging(0.992) TCGA-55-8203-01 9 125047485 125047485 G T MRRF Silent p.G126G 0.12 TCGA-55-8203-01 9 125863871 125863871 C G RABGAP1 Missense_Mutation p.C972W 0.41 deleterious(0) probably_damaging(0.99) TCGA-55-8203-01 9 126794959 126794959 A G LHX2 Silent p.S398S 0.33 TCGA-55-8203-01 9 131289491 131289491 A T GLE1 Missense_Mutation p.Q388L 0.23 deleterious(0.04) benign(0.185) TCGA-55-8203-01 9 135275516 135275516 C A TTF1 Missense_Mutation p.Q499H 0.14 deleterious(0) possibly_damaging(0.885) TCGA-55-8203-01 9 138376995 138376995 G T PPP1R26 Silent p.P213P 0.18 TCGA-55-8203-01 9 138376996 138376996 G T PPP1R26 Missense_Mutation p.V214F 0.18 deleterious(0.03) benign(0.31) TCGA-55-8203-01 9 138710463 138710463 C A CAMSAP1 Splice_Site p.X1320_splice 0.20 TCGA-55-8203-01 9 139266376 139266376 G A CARD9 Missense_Mutation p.P52L 0.26 tolerated(0.25) probably_damaging(1) TCGA-55-8203-01 9 18928468 18928468 C A FAM154A Missense_Mutation p.G336V 0.29 deleterious(0.02) possibly_damaging(0.772) TCGA-55-8203-01 9 19786265 19786265 G T SLC24A2 Missense_Mutation p.H200Q 0.13 tolerated(0.13) possibly_damaging(0.723) TCGA-55-8203-01 9 84226816 84226816 C A TLE1 Missense_Mutation p.M374I 0.44 tolerated(0.18) benign(0.001) TCGA-55-8203-01 9 84606548 84606548 C A SPATA31D1 Missense_Mutation p.A388D 0.21 tolerated(0.07) benign(0.191) TCGA-55-8203-01 9 98240358 98240358 C A PTCH1 Silent p.V442V 0.17 TCGA-55-8203-01 X 100503152 100503152 G T DRP2 Missense_Mutation p.D443Y 0.11 deleterious(0) probably_damaging(1) TCGA-55-8203-01 X 100656784 100656784 C T GLA Missense_Mutation p.G128E 0.14 deleterious(0) probably_damaging(0.999) TCGA-55-8203-01 X 100881119 100881119 T A ARMCX3 3'UTR 0.12 TCGA-55-8203-01 X 100911063 100911063 G T ARMCX2 Missense_Mutation p.H504Q 0.12 deleterious(0.01) probably_damaging(1) TCGA-55-8203-01 X 101096692 101096692 G T NXF5 Missense_Mutation p.A65E 0.33 tolerated(0.13) possibly_damaging(0.581) TCGA-55-8203-01 X 102334377 102334377 G T NXF3 Missense_Mutation p.H415Q 0.19 deleterious(0.03) possibly_damaging(0.592) TCGA-55-8203-01 X 10450570 10450570 C T MID1 Silent p.K321K 0.11 TCGA-55-8203-01 X 104984579 104984579 G C IL1RAPL2 Missense_Mutation p.A315P 0.10 tolerated(0.07) possibly_damaging(0.653) TCGA-55-8203-01 X 105449932 105449932 A G MUM1L1 Silent p.S169S 0.29 TCGA-55-8203-01 X 108697069 108697069 G T GUCY2F Missense_Mutation p.T351N 0.17 deleterious(0) probably_damaging(0.998) TCGA-55-8203-01 X 109441767 109441767 G T AMMECR1 Missense_Mutation p.P328Q 0.15 tolerated_low_confidence(0.07) possibly_damaging(0.776) TCGA-55-8203-01 X 109459750 109459750 C A AMMECR1 Missense_Mutation p.W232L 0.12 deleterious(0) probably_damaging(1) TCGA-55-8203-01 X 118708880 118708880 C T UBE2A Missense_Mutation p.P21S 0.08 tolerated(0.07) benign(0.287) TCGA-55-8203-01 X 118724896 118724896 C A NKRF Missense_Mutation p.E179D 0.11 tolerated(0.37) benign(0.006) TCGA-55-8203-01 X 120182418 120182418 G C GLUD2 Missense_Mutation p.G294R 0.10 deleterious(0) probably_damaging(0.95) TCGA-55-8203-01 X 122778712 122778712 G T THOC2 Missense_Mutation p.P493T 0.08 deleterious(0) probably_damaging(0.999) TCGA-55-8203-01 X 125298989 125298989 G T DCAF12L2 Silent p.R307R 0.35 TCGA-55-8203-01 X 125685464 125685464 G A DCAF12L1 Silent p.D376D 0.46 TCGA-55-8203-01 X 128645819 128645819 G T SMARCA1 Missense_Mutation p.L258I 0.09 tolerated(0.45) benign(0.162) TCGA-55-8203-01 X 129149565 129149565 T A BCORL1 Silent p.P939P 0.05 TCGA-55-8203-01 X 129206304 129206304 G T ELF4 Silent p.A143A 0.10 TCGA-55-8203-01 X 134421548 134421548 T C ZNF75D Missense_Mutation p.M352V 0.33 tolerated(0.11) benign(0.005) TCGA-55-8203-01 X 135314150 135314150 G T MAP7D3 Silent p.S322S 0.09 TCGA-55-8203-01 X 135427278 135427278 T A GPR112 Silent p.P471P 0.08 TCGA-55-8203-01 X 135429898 135429898 T C GPR112 Missense_Mutation p.S1345P 0.11 deleterious(0.02) possibly_damaging(0.897) TCGA-55-8203-01 X 135630860 135630860 C A VGLL1 Silent p.P109P 0.44 TCGA-55-8203-01 X 135630861 135630861 A T VGLL1 Missense_Mutation p.M110L 0.44 tolerated(0.4) benign(0) TCGA-55-8203-01 X 137715135 137715135 T A FGF13 Missense_Mutation p.K215M 0.12 deleterious(0) benign(0.144) TCGA-55-8203-01 X 138670544 138670544 C A MCF2 Missense_Mutation p.L884F 0.50 deleterious(0) probably_damaging(0.998) TCGA-55-8203-01 X 141290746 141290746 C A MAGEC2 Missense_Mutation p.R343I 0.07 deleterious(0) probably_damaging(0.929) TCGA-55-8203-01 X 142717426 142717426 C A SLITRK4 Missense_Mutation p.R500I 0.12 deleterious(0) possibly_damaging(0.641) TCGA-55-8203-01 X 144906534 144906534 G T SLITRK2 3'UTR 0.11 TCGA-55-8203-01 X 148037824 148037824 G T AFF2 Missense_Mutation p.C750F 0.10 deleterious(0.04) possibly_damaging(0.576) TCGA-55-8203-01 X 148585762 148585762 C A IDS Silent p.G55G 0.16 TCGA-55-8203-01 X 148628335 148628335 G T CXorf40A Missense_Mutation p.D102Y 0.14 deleterious(0) possibly_damaging(0.656) TCGA-55-8203-01 X 151896606 151896606 G C MAGEA12 3'Flank 0.03 TCGA-55-8203-01 X 152721789 152721789 C A HAUS7 Missense_Mutation p.E223D 0.05 tolerated(0.2) benign(0.013) TCGA-55-8203-01 X 152773762 152773762 C A BGN Silent p.P322P 0.10 TCGA-55-8203-01 X 153649030 153649030 G C TAZ Missense_Mutation p.A245P 0.11 tolerated(0.06) benign(0.005) TCGA-55-8203-01 X 154132600 154132600 G T F8 Missense_Mutation p.P1929H 0.11 deleterious(0) probably_damaging(0.978) TCGA-55-8203-01 X 154280018 154280018 A T FUNDC2 Missense_Mutation p.Q145L 0.20 deleterious(0) probably_damaging(0.924) TCGA-55-8203-01 X 18192332 18192332 G A BEND2 Missense_Mutation p.A600V 0.08 tolerated(0.13) benign(0.093) TCGA-55-8203-01 X 23018308 23018308 G T DDX53 Missense_Mutation p.G45V 0.21 tolerated(0.06) benign(0.052) TCGA-55-8203-01 X 3240763 3240763 G T MXRA5 Missense_Mutation p.P988Q 0.25 tolerated(0.2) benign(0.051) TCGA-55-8203-01 X 36103528 36103528 G T CHDC2 Missense_Mutation p.V172L 0.11 tolerated(0.2) probably_damaging(0.996) TCGA-55-8203-01 X 48651663 48651663 C T GATA1 Missense_Mutation p.P277S 0.17 deleterious(0.02) probably_damaging(0.984) TCGA-55-8203-01 X 49079280 49079280 G T CACNA1F Missense_Mutation p.D712E 0.14 deleterious(0.03) probably_damaging(0.985) TCGA-55-8203-01 X 53230809 53230809 G A KDM5C Silent p.L662L 0.14 TCGA-55-8203-01 X 63412377 63412377 C G AMER1 Missense_Mutation p.A264P 0.14 tolerated(0.25) benign(0.006) TCGA-55-8203-01 X 69496580 69496580 C G ARR3 Missense_Mutation p.S156C 0.15 deleterious(0.01) possibly_damaging(0.855) TCGA-55-8203-01 X 69624660 69624660 A T KIF4A Silent p.T962T 0.16 TCGA-55-8203-01 X 70467599 70467599 C T ZMYM3 Silent p.L711L 0.10 TCGA-55-8203-01 X 73046552 73046552 C G XIST RNA 0.33 TCGA-55-8203-01 X 73064384 73064384 G T XIST RNA 0.32 TCGA-55-8203-01 X 77381406 77381406 A G PGK1 3'UTR 0.14 TCGA-55-8203-01 X 78427211 78427211 C A GPR174 Missense_Mutation p.A236E 0.10 deleterious(0.03) possibly_damaging(0.891) TCGA-55-8203-01 X 79286261 79286261 C A TBX22 Missense_Mutation p.P405Q 0.32 deleterious(0.04) benign(0.141) TCGA-55-8203-01 X 84560850 84560850 C G POF1B Missense_Mutation p.E462Q 0.15 deleterious(0.05) possibly_damaging(0.88) TCGA-55-8203-01 X 85403694 85403694 C A DACH2 Silent p.R24R 0.30 TCGA-55-8203-01 X 85403942 85403942 G A DACH2 Silent p.L106L 0.11 TCGA-55-8203-01 X 86924451 86924451 T C KLHL4 3'UTR 0.36 TCGA-55-8203-01 X 88009037 88009037 C T CPXCR1 Missense_Mutation p.L208F 0.19 tolerated(0.08) benign(0.193) TCGA-55-8203-01 X 90691703 90691703 G T PABPC5 Missense_Mutation p.G376V 0.36 deleterious(0) benign(0.41) TCGA-55-8203-01 X 96203955 96203955 C T DIAPH2 Nonsense_Mutation p.R511* 0.17 TCGA-55-8204-01 10 101835726 101835726 G A CPN1 Missense_Mutation p.T121M 0.04 deleterious(0.04) probably_damaging(0.997) TCGA-55-8204-01 10 102987304 102987304 T A LBX1 Missense_Mutation p.D190V 0.19 deleterious(0) probably_damaging(0.999) TCGA-55-8204-01 10 114905822 114905822 C G TCF7L2 Missense_Mutation p.P281A 0.15 tolerated(0.06) probably_damaging(0.999) TCGA-55-8204-01 10 123844725 123844725 C G TACC2 Missense_Mutation p.Q904E 0.06 benign(0) TCGA-55-8204-01 10 123844949 123844949 C T TACC2 Silent p.F978F 0.08 TCGA-55-8204-01 10 127434468 127434468 T G EDRF1 Missense_Mutation p.F928C 0.26 deleterious(0.02) probably_damaging(1) TCGA-55-8204-01 10 135440175 135440175 G A FRG2B Silent p.F24F 0.24 TCGA-55-8204-01 10 18254458 18254458 G T SLC39A12 Missense_Mutation p.S197I 0.19 tolerated(0.08) benign(0.197) TCGA-55-8204-01 10 54076072 54076072 G C DKK1 Missense_Mutation p.D142H 0.06 deleterious(0) probably_damaging(0.914) TCGA-55-8204-01 10 64967818 64967818 T C JMJD1C Missense_Mutation p.H1204R 0.09 deleterious(0.03) probably_damaging(0.998) TCGA-55-8204-01 10 69934130 69934130 G C MYPN Missense_Mutation p.E761Q 0.07 tolerated(0.06) possibly_damaging(0.827) TCGA-55-8204-01 10 73567308 73567308 G A CDH23 Missense_Mutation p.D542N 0.20 tolerated(0.54) benign(0.013) TCGA-55-8204-01 10 92509292 92509292 G A HTR7 Missense_Mutation p.A200V 0.29 tolerated(0.06) possibly_damaging(0.85) TCGA-55-8204-01 10 94833725 94833725 T C CYP26A1 Missense_Mutation p.C12R 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-55-8204-01 10 96163324 96163324 C T TBC1D12 Silent p.F318F 0.14 TCGA-55-8204-01 10 97920367 97920367 G A ZNF518A RNA 0.09 TCGA-55-8204-01 11 1268479 1268479 C A MUC5B Silent p.R3457R 0.17 TCGA-55-8204-01 11 1272287 1272287 C A MUC5B Missense_Mutation p.S4726Y 0.04 unknown(0) TCGA-55-8204-01 11 30937111 30937111 C A DCDC1 Silent p.V1200V 0.13 TCGA-55-8204-01 11 5411387 5411387 C - OR51M1 Frame_Shift_Del p.C253* 0.13 TCGA-55-8204-01 11 55033082 55033082 C A TRIM48 Missense_Mutation p.L156I 0.17 deleterious(0.05) possibly_damaging(0.465) TCGA-55-8204-01 11 56085781 56085781 G T OR8K3 5'Flank 0.13 TCGA-55-8204-01 11 56085899 56085899 G A OR8K3 Silent p.V39V 0.17 TCGA-55-8204-01 11 609458 609458 C T PHRF1 Silent p.P1333P 0.21 TCGA-55-8204-01 11 61897767 61897767 G A INCENP Silent p.K256K 0.16 TCGA-55-8204-01 11 624251 624251 G A CDHR5 Missense_Mutation p.L92F 0.11 deleterious(0) probably_damaging(0.986) TCGA-55-8204-01 11 65146934 65146934 G C SLC25A45 Silent p.L84L 0.16 TCGA-55-8204-01 11 66322789 66322789 T C CTD-3074O7.2 3'Flank 0.18 TCGA-55-8204-01 11 67432979 67432979 C T ALDH3B2 Silent p.Q161Q 0.07 TCGA-55-8204-01 11 88323836 88323836 C A GRM5 Missense_Mutation p.E541D 0.15 deleterious(0) possibly_damaging(0.796) TCGA-55-8204-01 12 100685281 100685281 G A SCYL2 Missense_Mutation p.E60K 0.25 deleterious(0.04) possibly_damaging(0.823) TCGA-55-8204-01 12 101584273 101584273 G A SLC5A8 Missense_Mutation p.S269F 0.14 deleterious(0) probably_damaging(0.971) TCGA-55-8204-01 12 106633080 106633080 G T CKAP4 Missense_Mutation p.H511N 0.19 tolerated(0.29) possibly_damaging(0.466) TCGA-55-8204-01 12 130184795 130184795 G C TMEM132D Silent p.T176T 0.16 TCGA-55-8204-01 12 21919491 21919491 C T KCNJ8 Missense_Mutation p.M147I 0.11 tolerated(0.32) benign(0.06) TCGA-55-8204-01 12 40076762 40076762 A G C12orf40 Missense_Mutation p.I346V 0.19 tolerated(0.32) benign(0.023) TCGA-55-8204-01 12 48134329 48134329 T A RAPGEF3 Intron 0.33 TCGA-55-8204-01 12 49440208 49440208 C T KMT2D Splice_Site p.X1473_splice 0.08 TCGA-55-8204-01 12 49958272 49958272 G T MCRS1 Silent p.V196V 0.10 TCGA-55-8204-01 12 52824403 52824403 G A KRT75 Silent p.I319I 0.16 TCGA-55-8204-01 12 56217276 56217276 T C DNAJC14 Missense_Mutation p.N475S 0.14 deleterious(0.04) possibly_damaging(0.598) TCGA-55-8204-01 12 56488239 56488239 G C ERBB3 Silent p.V586V 0.09 TCGA-55-8204-01 12 57662768 57662768 C G R3HDM2 Missense_Mutation p.R590S 0.08 deleterious(0.03) probably_damaging(0.997) TCGA-55-8204-01 12 69121133 69121133 G T NUP107 Missense_Mutation p.E566D 0.14 tolerated(0.18) possibly_damaging(0.756) TCGA-55-8204-01 12 69121134 69121134 G T NUP107 Nonsense_Mutation p.E567* 0.15 TCGA-55-8204-01 12 75676095 75676095 G A CAPS2 Silent p.G535G 0.13 TCGA-55-8204-01 13 113974701 113974701 G A LAMP1 Silent p.S264S 0.13 TCGA-55-8204-01 14 101200822 101200822 G T DLK1 Missense_Mutation p.K247N 0.41 tolerated(0.29) benign(0.261) TCGA-55-8204-01 14 102496574 102496574 G C DYNC1H1 Missense_Mutation p.E3280Q 0.08 benign(0.002) TCGA-55-8204-01 14 105415194 105415194 G T AHNAK2 Silent p.T2198T 0.05 TCGA-55-8204-01 14 106311206 106311206 C G IGHD Missense_Mutation p.G120R 0.41 tolerated(0.35) benign(0.091) TCGA-55-8204-01 14 20020120 20020120 C T POTEM Nonsense_Mutation p.W34* 0.10 TCGA-55-8204-01 14 51706956 51706956 G A TMX1 5'UTR 0.26 TCGA-55-8204-01 14 72055330 72055330 C T SIPA1L1 Silent p.L247L 0.21 TCGA-55-8204-01 15 20495438 20495438 C A CHEK2P2 RNA 0.04 TCGA-55-8204-01 15 30012081 30012081 G A TJP1 Missense_Mutation p.S968L 0.16 deleterious_low_confidence(0.01) benign(0.017) TCGA-55-8204-01 15 31222871 31222871 T C FAN1 Silent p.F971F 0.15 TCGA-55-8204-01 15 31233896 31233896 A G MTMR10 Missense_Mutation p.L704P 0.13 tolerated(0.27) benign(0.002) TCGA-55-8204-01 15 33925183 33925183 T A RYR3 Silent p.P967P 0.13 TCGA-55-8204-01 15 42105896 42105896 C G MAPKBP1 Missense_Mutation p.F305L 0.16 deleterious(0) probably_damaging(0.912) TCGA-55-8204-01 15 48551431 48551431 A G SLC12A1 Missense_Mutation p.T693A 0.15 tolerated(0.71) benign(0.001) TCGA-55-8204-01 15 50888528 50888528 A C TRPM7 Missense_Mutation p.L1072V 0.15 tolerated(0.09) probably_damaging(0.951) TCGA-55-8204-01 15 89195511 89195511 G A ISG20 Silent p.L133L 0.22 TCGA-55-8204-01 16 28898878 28898878 G C ATP2A1 Missense_Mutation p.E255Q 0.06 deleterious(0.02) probably_damaging(0.997) TCGA-55-8204-01 16 30732646 30732646 C G SRCAP Silent p.P1130P 0.08 TCGA-55-8204-01 16 32890988 32890988 G T SLC6A10P RNA 0.18 TCGA-55-8204-01 16 3632513 3632513 G A SLX4 Missense_Mutation p.R1779W 0.34 deleterious(0) benign(0.39) TCGA-55-8204-01 16 51174841 51174841 G A SALL1 Missense_Mutation p.P431L 0.18 deleterious(0) benign(0.336) TCGA-55-8204-01 16 51174842 51174842 G T SALL1 Missense_Mutation p.P431T 0.19 deleterious(0) possibly_damaging(0.825) TCGA-55-8204-01 16 72110334 72110334 T A HPR Missense_Mutation p.I134N 0.16 deleterious(0) probably_damaging(1) TCGA-55-8204-01 16 81892727 81892727 G A PLCG2 Silent p.L146L 0.08 TCGA-55-8204-01 16 90128471 90128471 C G PRDM7 Missense_Mutation p.R247T 0.08 tolerated(0.11) benign(0.386) TCGA-55-8204-01 17 10258048 10258048 T A MYH13 Silent p.G318G 0.38 TCGA-55-8204-01 17 10303717 10303717 G C MYH8 Missense_Mutation p.S1242C 0.34 deleterious(0.01) possibly_damaging(0.759) TCGA-55-8204-01 17 1579338 1579338 G A PRPF8 Missense_Mutation p.R855W 0.27 deleterious(0) probably_damaging(0.994) TCGA-55-8204-01 17 29657516 29657519 AGTA - NF1 Splice_Site p.X1938_splice 0.38 TCGA-55-8204-01 17 3336768 3336768 T C OR1E2 Missense_Mutation p.Y123C 0.31 deleterious(0) probably_damaging(0.995) TCGA-55-8204-01 17 35300221 35300221 C G LHX1 Missense_Mutation p.S338R 0.50 tolerated(0.06) possibly_damaging(0.497) TCGA-55-8204-01 17 36521190 36521190 G C SOCS7 Splice_Site p.X320_splice 0.36 TCGA-55-8204-01 17 37213404 37213404 G A CTD-2206N4.4 RNA 0.22 TCGA-55-8204-01 17 45886294 45886294 C A OSBPL7 Nonsense_Mutation p.E745* 0.31 TCGA-55-8204-01 17 61957643 61957643 G T GH2 3'UTR 0.13 TCGA-55-8204-01 17 61957644 61957644 G T GH2 3'UTR 0.13 TCGA-55-8204-01 17 73831747 73831747 G A UNC13D Missense_Mutation p.R570C 0.37 tolerated(0.06) benign(0.339) TCGA-55-8204-01 17 7577018 7577018 C A TP53 Splice_Site p.X307_splice 0.28 TCGA-55-8204-01 18 13071110 13071110 A G CEP192 Silent p.S1749S 0.14 TCGA-55-8204-01 18 34081918 34081918 C T FHOD3 Nonsense_Mutation p.R121* 0.12 TCGA-55-8204-01 18 34740211 34740211 T A KIAA1328 Silent p.S427S 0.15 TCGA-55-8204-01 18 59157859 59157859 C A CDH20 Missense_Mutation p.L25M 0.22 deleterious(0.02) benign(0.085) TCGA-55-8204-01 18 64172303 64172303 C T CDH19 Missense_Mutation p.G689S 0.15 tolerated(0.35) probably_damaging(1) TCGA-55-8204-01 18 7038884 7038884 G T LAMA1 Missense_Mutation p.N496K 0.16 deleterious(0) probably_damaging(0.955) TCGA-55-8204-01 19 1057320 1057320 A T ABCA7 Missense_Mutation p.Y1591F 0.16 deleterious(0) probably_damaging(0.986) TCGA-55-8204-01 19 1063571 1063571 G A ABCA7 Missense_Mutation p.G1914E 0.16 deleterious(0) possibly_damaging(0.81) TCGA-55-8204-01 19 15586559 15586559 C T PGLYRP2 Missense_Mutation p.V308M 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-55-8204-01 19 16045057 16045057 G T CYP4F11 Silent p.P54P 0.18 TCGA-55-8204-01 19 17741496 17741496 C A UNC13A Silent p.L1164L 0.09 TCGA-55-8204-01 19 19379529 19379529 G A TM6SF2 Silent p.F173F 0.06 TCGA-55-8204-01 19 20045278 20045278 G T ZNF93 Missense_Mutation p.G505V 0.09 deleterious(0.02) possibly_damaging(0.759) TCGA-55-8204-01 19 20728063 20728063 C T ZNF737 Missense_Mutation p.E316K 0.10 tolerated(0.15) possibly_damaging(0.766) TCGA-55-8204-01 19 21606410 21606410 G T ZNF493 Nonsense_Mutation p.G317* 0.14 TCGA-55-8204-01 19 22364323 22364323 T C ZNF676 Missense_Mutation p.M66V 0.19 tolerated(1) benign(0) TCGA-55-8204-01 19 30165467 30165467 G A PLEKHF1 Missense_Mutation p.A241T 0.17 tolerated(0.57) benign(0.166) TCGA-55-8204-01 19 35850481 35850481 C G FFAR3 Missense_Mutation p.T230R 0.10 deleterious(0) probably_damaging(0.993) TCGA-55-8204-01 19 36109052 36109052 G C HAUS5 Missense_Mutation p.R259P 0.11 deleterious(0.02) possibly_damaging(0.842) TCGA-55-8204-01 19 36381481 36381481 C A NFKBID Intron 0.24 TCGA-55-8204-01 19 39090578 39090578 G C MAP4K1 Silent p.L552L 0.12 TCGA-55-8204-01 19 49519334 49519334 G C LHB Silent p.L139L 0.14 TCGA-55-8204-01 19 50339050 50339050 C G MED25 Missense_Mutation p.P605A 0.14 tolerated_low_confidence(0.37) benign(0.016) TCGA-55-8204-01 19 54872584 54872584 G T LAIR1 Nonsense_Mutation p.C101* 0.17 TCGA-55-8204-01 19 812944 812944 G A LPPR3 Silent p.L623L 0.33 TCGA-55-8204-01 1 116206699 116206699 A G VANGL1 Missense_Mutation p.I208V 0.16 tolerated(0.56) probably_damaging(0.997) TCGA-55-8204-01 1 146737743 146737743 C G CHD1L Missense_Mutation p.L298V 0.13 tolerated(0.09) possibly_damaging(0.542) TCGA-55-8204-01 1 152325571 152325571 G T FLG2 Missense_Mutation p.T1564K 0.16 possibly_damaging(0.689) TCGA-55-8204-01 1 156617896 156617896 C T BCAN Silent p.L255L 0.12 TCGA-55-8204-01 1 158517333 158517333 G A OR6Y1 Missense_Mutation p.P188L 0.13 deleterious(0.05) probably_damaging(1) TCGA-55-8204-01 1 161165418 161165418 G T ADAMTS4 Silent p.V366V 0.14 TCGA-55-8204-01 1 169696958 169696958 C A SELE Nonsense_Mutation p.G464* 0.18 TCGA-55-8204-01 1 171621567 171621567 G T MYOC Missense_Mutation p.P62Q 0.16 deleterious(0) probably_damaging(0.912) TCGA-55-8204-01 1 175375831 175375831 G T TNR Missense_Mutation p.T7K 0.16 tolerated_low_confidence(0.07) benign(0.08) TCGA-55-8204-01 1 17567233 17567233 C T PADI1 Missense_Mutation p.A579V 0.16 deleterious(0) probably_damaging(1) TCGA-55-8204-01 1 183617680 183617680 C A APOBEC4 Silent p.V79V 0.20 TCGA-55-8204-01 1 186057092 186057092 G C HMCN1 Missense_Mutation p.R3131T 0.09 probably_damaging(0.963) TCGA-55-8204-01 1 186084410 186084410 G A HMCN1 Missense_Mutation p.G3809S 0.16 probably_damaging(0.999) TCGA-55-8204-01 1 192128397 192128397 A C RGS18 Missense_Mutation p.E56A 0.09 tolerated(0.1) benign(0.419) TCGA-55-8204-01 1 197026422 197026422 A G F13B Missense_Mutation p.C327R 0.17 deleterious(0) probably_damaging(0.996) TCGA-55-8204-01 1 201185815 201185815 C A IGFN1 Silent p.R3177R 0.17 TCGA-55-8204-01 1 203052986 203052986 A C MYOG 3'UTR 0.27 TCGA-55-8204-01 1 203317404 203317404 C T FMOD Intron 0.14 TCGA-55-8204-01 1 241753533 241753533 G T KMO Nonsense_Mutation p.E410* 0.16 TCGA-55-8204-01 1 241803376 241803376 G A OPN3 Silent p.L61L 0.10 TCGA-55-8204-01 1 247163217 247163217 G C ZNF695 Missense_Mutation p.H55D 0.19 tolerated(0.2) benign(0.088) TCGA-55-8204-01 1 247835590 247835590 C A OR13G1 Missense_Mutation p.V252L 0.20 deleterious(0.04) benign(0.064) TCGA-55-8204-01 1 248112326 248112326 C A OR2L8 Missense_Mutation p.T56K 0.13 deleterious(0.04) benign(0.144) TCGA-55-8204-01 1 248512536 248512536 G T OR14C36 Missense_Mutation p.A154S 0.17 tolerated(1) benign(0.252) TCGA-55-8204-01 1 248525054 248525054 C A OR2T4 Missense_Mutation p.L58I 0.21 tolerated(0.14) benign(0.062) TCGA-55-8204-01 1 249107240 249107240 C A SH3BP5L Missense_Mutation p.G220V 0.11 tolerated(0.9) benign(0.003) TCGA-55-8204-01 1 39878114 39878114 A G KIAA0754 Missense_Mutation p.Y590C 0.14 benign(0.307) TCGA-55-8204-01 1 42730842 42730842 G C FOXJ3 Missense_Mutation p.L130V 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-8204-01 1 44461725 44461725 C G CCDC24 Missense_Mutation p.R273G 0.13 tolerated(0.14) benign(0.002) TCGA-55-8204-01 1 45226113 45226113 G T KIF2C Missense_Mutation p.R510L 0.13 deleterious(0.02) possibly_damaging(0.559) TCGA-55-8204-01 1 62740190 62740190 C T KANK4 Missense_Mutation p.E196K 0.18 tolerated(0.27) possibly_damaging(0.611) TCGA-55-8204-01 1 64059309 64059309 G A PGM1 Silent p.A50A 0.26 TCGA-55-8204-01 1 75072483 75072483 C A C1orf173 Missense_Mutation p.V431L 0.17 tolerated(1) benign(0) TCGA-55-8204-01 1 93070933 93070933 C G EVI5 Missense_Mutation p.R651S 0.15 deleterious(0) probably_damaging(0.962) TCGA-55-8204-01 20 10579401 10579401 G T SLX4IP Splice_Site p.X106_splice 0.15 TCGA-55-8204-01 20 23016198 23016198 T A SSTR4 Missense_Mutation p.S26R 0.21 deleterious(0.01) probably_damaging(0.969) TCGA-55-8204-01 20 3782985 3782985 G C CDC25B Missense_Mutation p.D386H 0.11 deleterious(0) possibly_damaging(0.779) TCGA-55-8204-01 20 50803567 50803567 G C ZFP64 Missense_Mutation p.I30M 0.14 deleterious(0) probably_damaging(0.991) TCGA-55-8204-01 20 52194950 52194950 G C ZNF217 Missense_Mutation p.S469C 0.18 deleterious(0) probably_damaging(0.971) TCGA-55-8204-01 20 52609150 52609150 A T BCAS1 Intron 0.12 TCGA-55-8204-01 20 60909015 60909015 C G LAMA5 Missense_Mutation p.M940I 0.10 benign(0.009) TCGA-55-8204-01 20 61430905 61430905 C A MRGBP Missense_Mutation p.D175E 0.11 tolerated(0.39) probably_damaging(0.952) TCGA-55-8204-01 21 34635344 34635344 G A IFNAR2 Missense_Mutation p.E363K 0.14 tolerated(0.49) benign(0.004) TCGA-55-8204-01 21 34635629 34635629 G A IFNAR2 Missense_Mutation p.D458N 0.16 tolerated(0.72) possibly_damaging(0.487) TCGA-55-8204-01 21 46363613 46363613 C G FAM207A Missense_Mutation p.I48M 0.10 tolerated(0.25) benign(0.009) TCGA-55-8204-01 22 19965103 19965103 C T ARVCF Missense_Mutation p.E569K 0.22 deleterious(0) probably_damaging(0.998) TCGA-55-8204-01 22 20748850 20748850 C G ZNF74 5'UTR 0.19 TCGA-55-8204-01 22 24107085 24107085 G C C22orf15 Missense_Mutation p.R144T 0.12 deleterious(0.01) probably_damaging(0.961) TCGA-55-8204-01 22 24129277 24129277 C G SMARCB1 5'UTR 0.17 TCGA-55-8204-01 22 31533803 31533803 C A PLA2G3 Missense_Mutation p.R320L 0.14 tolerated(0.36) benign(0.001) TCGA-55-8204-01 22 50752665 50752665 G C DENND6B Nonsense_Mutation p.S370* 0.08 TCGA-55-8204-01 2 131519960 131519960 G C AMER3 Silent p.T105T 0.18 TCGA-55-8204-01 2 140990850 140990850 C A LRP1B Missense_Mutation p.G4569W 0.11 probably_damaging(0.965) TCGA-55-8204-01 2 163002054 163002054 G T GCG Silent p.R130R 0.13 TCGA-55-8204-01 2 177033852 177033852 G A HOXD3 Missense_Mutation p.E4K 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.899) TCGA-55-8204-01 2 178534292 178534292 C A PDE11A Missense_Mutation p.A831S 0.19 deleterious(0) benign(0.01) TCGA-55-8204-01 2 196599676 196599676 C T SLC39A10 Missense_Mutation p.L803F 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-8204-01 2 197737706 197737706 C T PGAP1 Missense_Mutation p.E533K 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-8204-01 2 198570234 198570234 T C MARS2 Silent p.S35S 0.13 TCGA-55-8204-01 2 202550768 202550768 C A MPP4 Missense_Mutation p.L122F 0.13 deleterious(0.02) benign(0.33) TCGA-55-8204-01 2 202899757 202899757 G A FZD7 Silent p.Q129Q 0.09 TCGA-55-8204-01 2 20483185 20483185 C T PUM2 Missense_Mutation p.G452R 0.15 tolerated_low_confidence(0.08) probably_damaging(1) TCGA-55-8204-01 2 207655368 207655368 G A FASTKD2 Missense_Mutation p.M657I 0.14 deleterious(0.01) benign(0.315) TCGA-55-8204-01 2 232393702 232393702 G A NMUR1 Silent p.V10V 0.10 TCGA-55-8204-01 2 232458061 232458061 G T C2orf57 Missense_Mutation p.K133N 0.16 tolerated(0.1) possibly_damaging(0.895) TCGA-55-8204-01 2 242274556 242274556 G A SEPT2 Missense_Mutation p.G49E 0.27 deleterious(0) probably_damaging(1) TCGA-55-8204-01 2 39088709 39088709 C G DHX57 Silent p.L281L 0.16 TCGA-55-8204-01 2 47710080 47710080 A C MSH2 Missense_Mutation p.T933P 0.14 deleterious_low_confidence(0.01) benign(0.158) TCGA-55-8204-01 2 70052627 70052627 C G ANXA4 Missense_Mutation p.L316V 0.16 deleterious(0.01) possibly_damaging(0.873) TCGA-55-8204-01 2 77746620 77746620 G T LRRTM4 Missense_Mutation p.H125Q 0.14 tolerated(0.58) benign(0.018) TCGA-55-8204-01 2 77748842 77748842 T C LRRTM4 5'UTR 0.13 TCGA-55-8204-01 2 89278278 89278278 G A IGKV3-7 Silent p.T19T 0.12 TCGA-55-8204-01 2 90078046 90078046 C A IGKV3D-20 Missense_Mutation p.P28Q 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-55-8204-01 3 122634714 122634714 G A SEMA5B Missense_Mutation p.P625L 0.11 deleterious(0) probably_damaging(1) TCGA-55-8204-01 3 133653612 133653612 C T SLCO2A1 Nonsense_Mutation p.W626* 0.19 TCGA-55-8204-01 3 140866040 140866040 C A SPSB4 Missense_Mutation p.R251S 0.19 tolerated(0.05) benign(0.03) TCGA-55-8204-01 3 141535756 141535756 C T GRK7 Missense_Mutation p.A509V 0.16 tolerated(0.23) possibly_damaging(0.707) TCGA-55-8204-01 3 148750110 148750110 T C HLTF Missense_Mutation p.K976R 0.13 tolerated(0.19) benign(0.16) TCGA-55-8204-01 3 148768041 148768041 T C HLTF Missense_Mutation p.N532S 0.16 tolerated(0.46) benign(0.402) TCGA-55-8204-01 3 151012583 151012583 G A GPR87 Missense_Mutation p.R151W 0.11 tolerated(0.27) probably_damaging(0.986) TCGA-55-8204-01 3 47144882 47144882 G C SETD2 Missense_Mutation p.S1624C 0.22 deleterious(0) probably_damaging(0.94) TCGA-55-8204-01 3 50379537 50379537 T C ZMYND10 Missense_Mutation p.Q303R 0.19 deleterious(0) probably_damaging(0.994) TCGA-55-8204-01 3 73433891 73433891 C A PDZRN3 Missense_Mutation p.S609I 0.26 deleterious(0.01) possibly_damaging(0.885) TCGA-55-8204-01 3 97596853 97596853 G T CRYBG3 Missense_Mutation p.S324I 0.18 tolerated(0.52) benign(0.001) TCGA-55-8204-01 3 98487355 98487355 G - ST3GAL6 Frame_Shift_Del p.G25Efs*12 0.10 TCGA-55-8204-01 4 126372969 126372969 G T FAT4 Missense_Mutation p.V3600L 0.19 benign(0.107) TCGA-55-8204-01 4 166929200 166929200 G T TLL1 Missense_Mutation p.R306M 0.11 deleterious(0) probably_damaging(0.932) TCGA-55-8204-01 4 83557803 83557803 C A SCD5 Missense_Mutation p.R248L 0.14 deleterious(0) probably_damaging(0.975) TCGA-55-8204-01 4 89018623 89018623 G A ABCG2 Silent p.I543I 0.14 TCGA-55-8204-01 4 94316780 94316780 C A GRID2 Missense_Mutation p.T423K 0.16 tolerated(1) benign(0.001) TCGA-55-8204-01 5 112903522 112903522 C G YTHDC2 Missense_Mutation p.L1074V 0.17 tolerated(0.25) benign(0.007) TCGA-55-8204-01 5 1235679 1235679 G A SLC6A18 Missense_Mutation p.D175N 0.07 tolerated(0.13) benign(0.049) TCGA-55-8204-01 5 13817722 13817722 G C DNAH5 Missense_Mutation p.A2308G 0.08 possibly_damaging(0.694) TCGA-55-8204-01 5 180057229 180057229 C T FLT4 Missense_Mutation p.R170H 0.19 tolerated(0.71) benign(0.001) TCGA-55-8204-01 5 31318178 31318178 G T CDH6 Intron 0.58 TCGA-55-8204-01 5 33576343 33576343 G A ADAMTS12 Missense_Mutation p.T1263M 0.09 tolerated(0.1) benign(0.008) TCGA-55-8204-01 5 38431339 38431339 G C EGFLAM Missense_Mutation p.K705N 0.07 deleterious(0) probably_damaging(0.978) TCGA-55-8204-01 5 45645422 45645422 A T HCN1 Silent p.I238I 0.16 TCGA-55-8204-01 5 74077764 74077764 C T FAM169A Missense_Mutation p.E512K 0.21 tolerated(0.05) probably_damaging(0.981) TCGA-55-8204-01 5 79498720 79498720 G C SERINC5 Missense_Mutation p.H60Q 0.05 tolerated(0.38) benign(0) TCGA-55-8204-01 5 79617070 79617070 C T SPZ1 Nonsense_Mutation p.Q346* 0.19 TCGA-55-8204-01 5 80376443 80376443 G A RASGRF2 Missense_Mutation p.M332I 0.21 deleterious(0) possibly_damaging(0.74) TCGA-55-8204-01 5 86659176 86659176 C T RASA1 Missense_Mutation p.R489C 0.20 deleterious(0) probably_damaging(0.995) TCGA-55-8204-01 6 11104876 11104876 G C ERVFRD-1 Missense_Mutation p.S223C 0.12 deleterious(0.01) probably_damaging(0.97) TCGA-55-8204-01 6 116720482 116720482 C G DSE Nonsense_Mutation p.Y23* 0.15 TCGA-55-8204-01 6 126080731 126080731 C A HEY2 Missense_Mutation p.A266D 0.19 tolerated(0.54) possibly_damaging(0.501) TCGA-55-8204-01 6 127837038 127837038 C T SOGA3 Missense_Mutation p.G241D 0.12 tolerated_low_confidence(0.13) probably_damaging(0.931) TCGA-55-8204-01 6 133769249 133769249 G A EYA4 Missense_Mutation p.G70E 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.787) TCGA-55-8204-01 6 146234666 146234666 C T SHPRH Missense_Mutation p.G1425E 0.12 deleterious(0.01) probably_damaging(0.946) TCGA-55-8204-01 6 152129472 152129472 G C ESR1 Missense_Mutation p.R142P 0.13 tolerated(0.25) possibly_damaging(0.813) TCGA-55-8204-01 6 160999592 160999592 C T LPA Silent p.V1478V 0.13 TCGA-55-8204-01 6 170058428 170058428 A G WDR27 Missense_Mutation p.L449P 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-55-8204-01 6 29527541 29527541 C T UBD 5'UTR 0.13 TCGA-55-8204-01 6 32137205 32137205 G C AGPAT1 Missense_Mutation p.L234V 0.14 deleterious(0) probably_damaging(0.927) TCGA-55-8204-01 6 42200514 42200514 C G TRERF1 Missense_Mutation p.Q1061H 0.20 deleterious(0.01) benign(0.216) TCGA-55-8204-01 6 44278181 44278181 C T AARS2 Splice_Site p.X250_splice 0.15 TCGA-55-8204-01 6 4935834 4935834 G C CDYL Missense_Mutation p.R259S 0.14 deleterious(0) probably_damaging(0.948) TCGA-55-8204-01 6 62995881 62995881 G A KHDRBS2 5'UTR 0.14 TCGA-55-8204-01 6 75840695 75840695 T A COL12A1 Silent p.I1980I 0.16 TCGA-55-8204-01 6 75843645 75843645 C A COL12A1 Missense_Mutation p.D1865Y 0.14 probably_damaging(0.989) TCGA-55-8204-01 6 89888649 89888649 A T GABRR1 Missense_Mutation p.L427Q 0.13 tolerated(0.12) probably_damaging(0.912) TCGA-55-8204-01 6 90077683 90077683 C T RRAGD 3'UTR 0.15 TCGA-55-8204-01 7 100282070 100282070 C T GIGYF1 Intron 0.14 TCGA-55-8204-01 7 100283669 100283669 C T GIGYF1 Missense_Mutation p.E328K 0.14 deleterious(0.01) unknown(0) TCGA-55-8204-01 7 100350047 100350047 C T ZAN Silent p.L773L 0.15 TCGA-55-8204-01 7 105108839 105108839 C G PUS7 Missense_Mutation p.K490N 0.17 deleterious(0.03) benign(0.297) TCGA-55-8204-01 7 110764680 110764680 C G LRRN3 Missense_Mutation p.Q618E 0.15 tolerated(0.71) benign(0.004) TCGA-55-8204-01 7 142494957 142494957 A T TRBJ2-6 Missense_Mutation p.S13C 0.14 unknown(0) TCGA-55-8204-01 7 143884309 143884309 C T ARHGEF35 Missense_Mutation p.V390M 0.17 tolerated(0.17) possibly_damaging(0.627) TCGA-55-8204-01 7 149418473 149418473 G T KRBA1 Missense_Mutation p.A105S 0.09 deleterious(0.04) benign(0.242) TCGA-55-8204-01 7 150841027 150841027 A G AGAP3 Silent p.L911L 0.19 TCGA-55-8204-01 7 15725811 15725811 G A MEOX2 Missense_Mutation p.H73Y 0.27 tolerated(0.8) benign(0.221) TCGA-55-8204-01 7 48314742 48314742 C T ABCA13 Missense_Mutation p.H1827Y 0.21 benign(0.043) TCGA-55-8204-01 7 62752684 62752684 T A ZNF733P RNA 0.19 TCGA-55-8204-01 8 110592173 110592173 A C SYBU Missense_Mutation p.S197A 0.12 tolerated(0.14) benign(0.001) TCGA-55-8204-01 8 113702274 113702274 C T CSMD3 Missense_Mutation p.E660K 0.12 tolerated(0.15) possibly_damaging(0.65) TCGA-55-8204-01 8 120865389 120865389 C T DSCC1 Silent p.L83L 0.28 TCGA-55-8204-01 8 124798768 124798768 A G FAM91A1 Silent p.S332S 0.26 TCGA-55-8204-01 8 130789795 130789795 G C GSDMC Silent p.V13V 0.09 TCGA-55-8204-01 8 143999044 143999044 G T CYP11B2 Silent p.T71T 0.32 TCGA-55-8204-01 8 144358633 144358633 G A GLI4 Missense_Mutation p.E264K 0.16 deleterious(0.05) probably_damaging(0.963) TCGA-55-8204-01 8 22009054 22009054 G A LGI3 Silent p.I259I 0.22 TCGA-55-8204-01 8 23540115 23540115 A G NKX3-1 Splice_Site p.X96_splice 0.16 TCGA-55-8204-01 8 35606111 35606111 C T UNC5D Silent p.I611I 0.12 TCGA-55-8204-01 8 48746778 48746778 C T PRKDC Missense_Mutation p.E2710K 0.11 benign(0.031) TCGA-55-8204-01 8 72959399 72959399 G T TRPA1 Missense_Mutation p.S650Y 0.12 deleterious(0.01) possibly_damaging(0.868) TCGA-55-8204-01 8 81733691 81733691 C T ZNF704 Missense_Mutation p.E47K 0.14 deleterious_low_confidence(0.03) benign(0.131) TCGA-55-8204-01 8 88885885 88885885 T A DCAF4L2 Silent p.R105R 0.15 TCGA-55-8204-01 9 116840411 116840411 C T AMBP Missense_Mutation p.D27N 0.20 tolerated(0.1) benign(0.004) TCGA-55-8204-01 9 125642564 125642564 C A RC3H2 Intron 0.14 TCGA-55-8204-01 9 131810799 131810799 C T FAM73B Missense_Mutation p.S134F 0.26 deleterious(0) probably_damaging(1) TCGA-55-8204-01 9 132637175 132637175 C GA USP20 Nonsense_Mutation p.Y663* 0.22 TCGA-55-8204-01 9 132637221 132637221 G C USP20 Missense_Mutation p.V679L 0.14 deleterious(0.01) probably_damaging(1) TCGA-55-8204-01 9 140777252 140777252 C T CACNA1B Silent p.I149I 0.10 TCGA-55-8204-01 9 32634979 32634979 A C TAF1L Missense_Mutation p.V200G 0.15 tolerated(0.08) benign(0.097) TCGA-55-8204-01 9 5769199 5769199 C G KIAA1432 Missense_Mutation p.P1123A 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-8204-01 X 107335029 107335029 G C ATG4A 5'UTR 0.24 TCGA-55-8204-01 X 112024237 112024237 G A AMOT Missense_Mutation p.P784S 0.23 unknown(0) TCGA-55-8204-01 X 119005192 119005192 C T RNF113A Missense_Mutation p.D129N 0.20 deleterious(0.01) probably_damaging(0.972) TCGA-55-8204-01 X 129801710 129801710 G A ENOX2 Missense_Mutation p.S263F 0.15 deleterious(0.02) possibly_damaging(0.553) TCGA-55-8204-01 X 138671999 138671999 C A MCF2 Missense_Mutation p.V865F 0.17 deleterious(0) possibly_damaging(0.495) TCGA-55-8204-01 X 17743934 17743934 C T NHS Missense_Mutation p.H549Y 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-55-8204-01 X 47001811 47001811 C T NDUFB11 Missense_Mutation p.E133K 0.15 deleterious(0.02) possibly_damaging(0.855) TCGA-55-8204-01 X 83129556 83129556 C A CYLC1 Missense_Mutation p.P614T 0.08 tolerated(0.08) possibly_damaging(0.49) TCGA-55-8205-01 10 101945428 101945428 G A ERLIN1 5'UTR 0.08 TCGA-55-8205-01 10 102505920 102505920 C T PAX2 5'UTR 0.38 TCGA-55-8205-01 10 103285902 103285902 A T BTRC Missense_Mutation p.E230V 0.10 deleterious(0.01) possibly_damaging(0.786) TCGA-55-8205-01 10 103587744 103587744 G A KCNIP2 Missense_Mutation p.L217F 0.39 tolerated(0.05) benign(0.062) TCGA-55-8205-01 10 104592752 104592752 G C CYP17A1 Missense_Mutation p.Q323E 0.09 tolerated(0.9) benign(0.015) TCGA-55-8205-01 10 105158170 105158170 T A PDCD11 Intron 0.08 TCGA-55-8205-01 10 11504625 11504625 G A USP6NL Nonsense_Mutation p.Q785* 0.06 TCGA-55-8205-01 10 117059645 117059645 C G ATRNL1 Silent p.G839G 0.07 TCGA-55-8205-01 10 12142258 12142258 C G DHTKD1 Missense_Mutation p.Q585E 0.10 tolerated(0.4) benign(0.047) TCGA-55-8205-01 10 129859976 129859976 C G PTPRE Missense_Mutation p.Q208E 0.14 deleterious(0) possibly_damaging(0.809) TCGA-55-8205-01 10 131761266 131761266 G T EBF3 Missense_Mutation p.P99T 0.27 tolerated(0.15) benign(0.036) TCGA-55-8205-01 10 134174993 134174993 G A LRRC27 Silent p.L401L 0.08 TCGA-55-8205-01 10 135024141 135024141 A T KNDC1 Missense_Mutation p.Q1274L 0.08 deleterious(0) possibly_damaging(0.875) TCGA-55-8205-01 10 14976702 14976702 C A DCLRE1C Silent p.R179R 0.17 TCGA-55-8205-01 10 25314011 25314011 C G THNSL1 Missense_Mutation p.S620C 0.11 deleterious(0) possibly_damaging(0.863) TCGA-55-8205-01 10 26241126 26241126 A T MYO3A Missense_Mutation p.K29N 0.14 deleterious(0) probably_damaging(0.988) TCGA-55-8205-01 10 26856409 26856410 GT - APBB1IP Frame_Shift_Del p.S666Lfs*27 0.10 TCGA-55-8205-01 10 27436479 27436479 T A YME1L1 Missense_Mutation p.D96V 0.29 tolerated_low_confidence(0.19) benign(0.001) TCGA-55-8205-01 10 30915075 30915075 C A LYZL2 Missense_Mutation p.G132V 0.13 tolerated(0.09) benign(0.006) TCGA-55-8205-01 10 37482124 37482124 G C ANKRD30A Missense_Mutation p.R795T 0.15 tolerated(0.38) benign(0.001) TCGA-55-8205-01 10 45891371 45891371 C A ALOX5 Missense_Mutation p.Q140K 0.25 deleterious(0.04) benign(0.159) TCGA-55-8205-01 10 50835698 50835698 G - CHAT Frame_Shift_Del p.D328Ifs*6 0.09 TCGA-55-8205-01 10 52569743 52569743 G C A1CF Missense_Mutation p.A515G 0.30 deleterious(0) probably_damaging(0.999) TCGA-55-8205-01 10 54074171 54074171 T C DKK1 5'UTR 0.08 TCGA-55-8205-01 10 55780041 55780041 G T PCDH15 Missense_Mutation p.Q888K 0.11 tolerated(0.59) benign(0.216) TCGA-55-8205-01 10 55780042 55780042 G T PCDH15 Missense_Mutation p.D887E 0.11 tolerated(0.38) benign(0.013) TCGA-55-8205-01 10 60148449 60148449 G T TFAM Missense_Mutation p.R104M 0.26 deleterious(0.01) benign(0.232) TCGA-55-8205-01 10 68687790 68687790 C G LRRTM3 Silent p.A372A 0.26 TCGA-55-8205-01 10 69714793 69714793 C G HERC4 Missense_Mutation p.R715T 0.32 deleterious(0) probably_damaging(0.997) TCGA-55-8205-01 10 70451060 70451060 A G TET1 Missense_Mutation p.D1967G 0.29 deleterious(0.02) probably_damaging(0.957) TCGA-55-8205-01 10 7679321 7679321 G A ITIH5 Silent p.I174I 0.11 TCGA-55-8205-01 10 7822238 7822238 C A KIN Missense_Mutation p.R81M 0.18 deleterious(0) probably_damaging(0.978) TCGA-55-8205-01 10 93600441 93600441 G A TNKS2 Missense_Mutation p.D551N 0.09 tolerated(0.28) benign(0.199) TCGA-55-8205-01 10 98416556 98416556 C A PIK3AP1 Missense_Mutation p.G189V 0.10 deleterious(0) probably_damaging(0.998) TCGA-55-8205-01 10 99330310 99330310 C T UBTD1 3'UTR 0.33 TCGA-55-8205-01 11 109294455 109294455 C A C11orf87 Missense_Mutation p.N32K 0.21 tolerated_low_confidence(0.23) benign(0.154) TCGA-55-8205-01 11 109294788 109294788 T A C11orf87 Silent p.P143P 0.27 TCGA-55-8205-01 11 113705003 113705003 G A USP28 Nonsense_Mutation p.Q197* 0.25 TCGA-55-8205-01 11 118926026 118926026 A C HYOU1 Missense_Mutation p.L97R 0.17 deleterious(0) possibly_damaging(0.637) TCGA-55-8205-01 11 118985022 118985022 C T C2CD2L Missense_Mutation p.S620L 0.14 tolerated(0.12) probably_damaging(1) TCGA-55-8205-01 11 120312504 120312504 C A ARHGEF12 Nonsense_Mutation p.S394* 0.17 TCGA-55-8205-01 11 1217225 1217225 C G MUC5AC RNA 0.15 TCGA-55-8205-01 11 12315811 12315811 G A MICALCL Missense_Mutation p.R278Q 0.13 deleterious(0.02) possibly_damaging(0.821) TCGA-55-8205-01 11 125280103 125280103 G A PKNOX2 Silent p.Q200Q 0.19 TCGA-55-8205-01 11 13438790 13438790 C A BTBD10 Missense_Mutation p.R201L 0.21 tolerated(0.46) benign(0.32) TCGA-55-8205-01 11 1467115 1467115 G A BRSK2 Missense_Mutation p.E448K 0.24 tolerated(0.08) possibly_damaging(0.562) TCGA-55-8205-01 11 14901869 14901869 C G CYP2R1 Missense_Mutation p.Q271H 0.08 tolerated(0.25) benign(0.002) TCGA-55-8205-01 11 18655855 18655855 G A SPTY2D1 5'UTR 0.14 TCGA-55-8205-01 11 20529927 20529927 A T PRMT3 Missense_Mutation p.N522Y 0.18 benign(0.168) TCGA-55-8205-01 11 20676427 20676427 G A SLC6A5 3'UTR 0.24 TCGA-55-8205-01 11 2426187 2426187 G T TRPM5 Missense_Mutation p.Q1160K 0.10 tolerated_low_confidence(0.61) benign(0.013) TCGA-55-8205-01 11 30352670 30352670 C T ARL14EP Missense_Mutation p.H59Y 0.13 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-55-8205-01 11 30922020 30922020 G C DCDC1 Missense_Mutation p.N1509K 0.27 tolerated_low_confidence(0.37) benign(0) TCGA-55-8205-01 11 36512104 36512104 C G TRAF6 Missense_Mutation p.D285H 0.11 deleterious(0.05) benign(0.204) TCGA-55-8205-01 11 40136987 40136987 G T LRRC4C Missense_Mutation p.L286I 0.13 deleterious(0.04) probably_damaging(0.99) TCGA-55-8205-01 11 4470692 4470692 G T OR52K2 Silent p.L41L 0.14 TCGA-55-8205-01 11 4510264 4510264 G A OR52K1 Missense_Mutation p.C45Y 0.16 tolerated(0.26) benign(0.252) TCGA-55-8205-01 11 47861587 47861588 - TGAC NUP160 Frame_Shift_Ins p.I186Vfs*5 0.24 TCGA-55-8205-01 11 48142704 48142704 C T PTPRJ Nonsense_Mutation p.Q168* 0.21 TCGA-55-8205-01 11 48328343 48328343 C T OR4S1 Missense_Mutation p.T190I 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-55-8205-01 11 48328378 48328378 G T OR4S1 Missense_Mutation p.G202C 0.16 deleterious(0) probably_damaging(0.968) TCGA-55-8205-01 11 4936858 4936858 G T OR51G2 Missense_Mutation p.S12R 0.14 tolerated(0.25) unknown(0) TCGA-55-8205-01 11 5221223 5221223 T A OR51V1 Silent p.A236A 0.10 TCGA-55-8205-01 11 55595304 55595304 A T OR5L2 Missense_Mutation p.T204S 0.13 tolerated(0.47) possibly_damaging(0.458) TCGA-55-8205-01 11 55761590 55761590 G C OR5F1 Missense_Mutation p.S171C 0.20 deleterious(0) probably_damaging(0.991) TCGA-55-8205-01 11 55999820 55999820 C A OR5T2 Missense_Mutation p.G281V 0.13 deleterious(0.02) probably_damaging(0.982) TCGA-55-8205-01 11 56019904 56019904 G T OR5T3 Missense_Mutation p.V77L 0.27 tolerated(0.67) benign(0.003) TCGA-55-8205-01 11 56043303 56043303 G T OR5T1 Silent p.G63G 0.18 TCGA-55-8205-01 11 56114279 56114279 C G OR8K1 Missense_Mutation p.I255M 0.13 deleterious_low_confidence(0.02) benign(0.118) TCGA-55-8205-01 11 56128441 56128441 C A OR8J1 Missense_Mutation p.T240N 0.12 deleterious(0) probably_damaging(0.993) TCGA-55-8205-01 11 57102112 57102112 C A SSRP1 Missense_Mutation p.R22L 0.15 deleterious(0) possibly_damaging(0.566) TCGA-55-8205-01 11 57193706 57193706 C A SLC43A3 5'UTR 0.11 TCGA-55-8205-01 11 57428663 57428663 C G CLP1 Missense_Mutation p.Q345E 0.20 tolerated(0.57) benign(0.03) TCGA-55-8205-01 11 57798603 57798603 C G OR6Q1 Missense_Mutation p.P60R 0.21 deleterious(0) probably_damaging(0.997) TCGA-55-8205-01 11 59620679 59620679 G T TCN1 Missense_Mutation p.Q413K 0.15 tolerated(0.07) possibly_damaging(0.687) TCGA-55-8205-01 11 59622189 59622189 G T TCN1 Missense_Mutation p.L353I 0.26 tolerated(0.08) benign(0.005) TCGA-55-8205-01 11 59834501 59834501 A T MS4A3 Silent p.I143I 0.31 TCGA-55-8205-01 11 60708653 60708653 G C SLC15A3 Missense_Mutation p.S406C 0.19 deleterious(0) probably_damaging(0.998) TCGA-55-8205-01 11 62381161 62381161 C A ROM1 Silent p.G136G 0.10 TCGA-55-8205-01 11 62455963 62455963 G A LRRN4CL Silent p.C6C 0.12 TCGA-55-8205-01 11 6292526 6292526 C G CCKBR Missense_Mutation p.A366G 0.09 tolerated(0.14) benign(0.348) TCGA-55-8205-01 11 63987469 63987469 C T FERMT3 Nonsense_Mutation p.Q400* 0.11 TCGA-55-8205-01 11 63987477 63987477 C G FERMT3 Silent p.L402L 0.11 TCGA-55-8205-01 11 64664242 64664242 G - ATG2A Frame_Shift_Del p.M1751Cfs*132 0.16 TCGA-55-8205-01 11 65321285 65321285 C T LTBP3 Missense_Mutation p.E251K 0.47 tolerated(0.62) possibly_damaging(0.776) TCGA-55-8205-01 11 66050518 66050518 G A CNIH2 Missense_Mutation p.E71K 0.33 deleterious(0) possibly_damaging(0.626) TCGA-55-8205-01 11 6643583 6643583 T C DCHS1 Silent p.R3108R 0.31 TCGA-55-8205-01 11 6644998 6644998 C A DCHS1 Missense_Mutation p.V2637L 0.16 tolerated(0.14) benign(0.129) TCGA-55-8205-01 11 66453366 66453366 G A SPTBN2 Silent p.F2383F 0.23 TCGA-55-8205-01 11 6648178 6648178 G T DCHS1 Missense_Mutation p.P2031H 0.09 tolerated(0.36) possibly_damaging(0.62) TCGA-55-8205-01 11 67432765 67432765 G T ALDH3B2 Missense_Mutation p.R233S 0.31 deleterious(0.04) possibly_damaging(0.452) TCGA-55-8205-01 11 678772 678772 G T DEAF1 Missense_Mutation p.H393N 0.22 tolerated(0.18) benign(0.017) TCGA-55-8205-01 11 68517774 68517774 C A MTL5 Missense_Mutation p.A119S 0.25 tolerated(0.55) benign(0.026) TCGA-55-8205-01 11 6898578 6898578 G A OR10A4 Missense_Mutation p.G234R 0.18 deleterious(0.01) probably_damaging(1) TCGA-55-8205-01 11 6913241 6913241 A T OR2D2 Missense_Mutation p.L164Q 0.13 deleterious(0) probably_damaging(0.981) TCGA-55-8205-01 11 7022215 7022215 C T ZNF214 Silent p.R233R 0.12 TCGA-55-8205-01 11 70331648 70331648 G A SHANK2 Missense_Mutation p.P1585S 0.20 tolerated(0.05) possibly_damaging(0.641) TCGA-55-8205-01 11 7064498 7064498 G T NLRP14 Missense_Mutation p.G414V 0.13 tolerated(0.49) benign(0.013) TCGA-55-8205-01 11 77632422 77632422 G A INTS4 Silent p.L576L 0.14 TCGA-55-8205-01 11 84634151 84634151 T A DLG2 Intron 0.24 TCGA-55-8205-01 11 92616117 92616117 C A FAT3 Silent p.I4165I 0.25 TCGA-55-8205-01 12 101017660 101017660 G - GAS2L3 Frame_Shift_Del p.G361Efs*31 0.12 TCGA-55-8205-01 12 103232942 103232942 T C PAH 3'UTR 0.08 TCGA-55-8205-01 12 104031793 104031793 G T STAB2 Splice_Site p.X237_splice 0.06 TCGA-55-8205-01 12 108642061 108642061 G T WSCD2 Missense_Mutation p.D547Y 0.09 deleterious(0) probably_damaging(0.982) TCGA-55-8205-01 12 108912499 108912499 C - FICD Frame_Shift_Del p.K210Rfs*56 0.18 TCGA-55-8205-01 12 112622471 112622471 G A HECTD4 Silent p.Y3287Y 0.17 TCGA-55-8205-01 12 114804106 114804106 G T TBX5 Silent p.S282S 0.06 TCGA-55-8205-01 12 114804198 114804198 T A TBX5 Splice_Site p.X252_splice 0.14 TCGA-55-8205-01 12 121471372 121471372 C A OASL Missense_Mutation p.D125Y 0.15 deleterious(0.03) possibly_damaging(0.717) TCGA-55-8205-01 12 122689187 122689187 G C B3GNT4 Missense_Mutation p.A8P 0.08 tolerated_low_confidence(0.28) benign(0.036) TCGA-55-8205-01 12 122726942 122726942 G A VPS33A Silent p.I361I 0.10 TCGA-55-8205-01 12 12514235 12514235 G T LOH12CR1 Missense_Mutation p.D52Y 0.23 deleterious(0) probably_damaging(0.948) TCGA-55-8205-01 12 130898703 130898703 C A RIMBP2 Missense_Mutation p.E873D 0.07 deleterious(0) probably_damaging(0.944) TCGA-55-8205-01 12 133219462 133219462 C T POLE Missense_Mutation p.E1558K 0.09 deleterious(0.01) probably_damaging(0.943) TCGA-55-8205-01 12 133398680 133398680 T A GOLGA3 Missense_Mutation p.Q12L 0.13 tolerated_low_confidence(1) benign(0.001) TCGA-55-8205-01 12 133398682 133398682 G A GOLGA3 Silent p.L11L 0.13 TCGA-55-8205-01 12 18573927 18573927 T C PIK3C2G Silent p.L749L 0.08 TCGA-55-8205-01 12 1940449 1940449 C G LRTM2 Missense_Mutation p.S139W 0.10 deleterious(0.01) possibly_damaging(0.729) TCGA-55-8205-01 12 20523114 20523114 A G PDE3A Missense_Mutation p.E299G 0.07 deleterious(0.01) possibly_damaging(0.873) TCGA-55-8205-01 12 3921379 3921379 G A PARP11 Silent p.D309D 0.08 TCGA-55-8205-01 12 43825162 43825162 A G ADAMTS20 Silent p.A1078A 0.11 TCGA-55-8205-01 12 43833482 43833482 C A ADAMTS20 Missense_Mutation p.D846Y 0.08 deleterious(0.03) possibly_damaging(0.851) TCGA-55-8205-01 12 45695836 45695836 G T ANO6 Missense_Mutation p.G58V 0.10 tolerated(0.07) benign(0.24) TCGA-55-8205-01 12 47182310 47182310 C T SLC38A4 Splice_Site p.X70_splice 0.15 TCGA-55-8205-01 12 49425027 49425027 G A KMT2D Silent p.I4487I 0.07 TCGA-55-8205-01 12 52435709 52435709 G C NR4A1 Missense_Mutation p.Q11H 0.20 tolerated_low_confidence(0.15) benign(0) TCGA-55-8205-01 12 52961996 52961996 C A KRT74 Nonsense_Mutation p.E438* 0.14 TCGA-55-8205-01 12 53044165 53044165 T A KRT2 Missense_Mutation p.E253V 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-8205-01 12 58009617 58009617 C T ARHGEF25 Intron 0.08 TCGA-55-8205-01 12 6647021 6647021 C T GAPDH Missense_Mutation p.S266L 0.10 tolerated_low_confidence(0.06) benign(0.003) TCGA-55-8205-01 12 66935658 66935658 C T GRIP1 Missense_Mutation p.G70E 0.11 deleterious(0) possibly_damaging(0.893) TCGA-55-8205-01 12 68715335 68715335 T A MDM1 Missense_Mutation p.K292M 0.18 deleterious(0) probably_damaging(0.978) TCGA-55-8205-01 12 7188375 7188375 C T C1R Missense_Mutation p.E475K 0.09 tolerated(0.34) benign(0.008) TCGA-55-8205-01 12 7249480 7249480 A T C1RL Missense_Mutation p.V324E 0.07 deleterious(0) probably_damaging(0.909) TCGA-55-8205-01 12 7848292 7848292 G A GDF3 Silent p.S11S 0.23 TCGA-55-8205-01 12 8211813 8211813 G C C3AR1 Missense_Mutation p.F323L 0.07 tolerated(0.12) benign(0.015) TCGA-55-8205-01 12 8248226 8248226 C T NECAP1 Missense_Mutation p.P236S 0.14 tolerated(0.55) benign(0.001) TCGA-55-8205-01 12 82752003 82752003 C A CCDC59 Missense_Mutation p.E51D 0.16 deleterious(0.01) benign(0.312) TCGA-55-8205-01 13 107822754 107822754 G T FAM155A 3'UTR 0.12 TCGA-55-8205-01 13 108518771 108518771 G A FAM155A Silent p.F58F 0.11 TCGA-55-8205-01 13 109793570 109793570 G C MYO16 Missense_Mutation p.R1648S 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.521) TCGA-55-8205-01 13 115091253 115091253 A G CHAMP1 Missense_Mutation p.I646V 0.15 tolerated(0.53) benign(0.002) TCGA-55-8205-01 13 20411675 20411675 C A ZMYM5 3'UTR 0.11 TCGA-55-8205-01 13 31727028 31727028 C G HSPH1 Missense_Mutation p.G164R 0.08 deleterious(0) probably_damaging(1) TCGA-55-8205-01 13 33334733 33334733 A T PDS5B Silent p.L1131L 0.08 TCGA-55-8205-01 13 43787958 43787958 A G ENOX1 3'UTR 0.33 TCGA-55-8205-01 13 43930175 43930175 G T ENOX1 Missense_Mutation p.R235S 0.22 deleterious(0) benign(0.011) TCGA-55-8205-01 13 45148877 45148877 T A TSC22D1 Missense_Mutation p.N445I 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-55-8205-01 13 46936716 46936716 C A KIAA0226L Missense_Mutation p.D315Y 0.33 deleterious(0.04) benign(0.046) TCGA-55-8205-01 13 50059826 50059826 G A SETDB2 Missense_Mutation p.E527K 0.14 tolerated(0.91) benign(0.428) TCGA-55-8205-01 13 52542718 52542718 C T ATP7B Silent p.L523L 0.12 TCGA-55-8205-01 13 52548368 52548368 C G ATP7B Missense_Mutation p.G330R 0.11 tolerated(0.25) benign(0.021) TCGA-55-8205-01 14 102732201 102732201 C G MOK Silent p.L57L 0.12 TCGA-55-8205-01 14 102900698 102900702 GCGTG - TECPR2 Frame_Shift_Del p.S515Rfs*17 0.29 TCGA-55-8205-01 14 106090876 106090876 C T IGHG4 Silent p.V307V 0.07 TCGA-55-8205-01 14 106622077 106622077 G T IGHV3-16 Silent p.A56A 0.18 TCGA-55-8205-01 14 106622078 106622078 G T IGHV3-16 Missense_Mutation p.A56D 0.17 deleterious_low_confidence(0) benign(0.219) TCGA-55-8205-01 14 19988282 19988282 G C POTEM 3'UTR 0.13 TCGA-55-8205-01 14 20404563 20404563 G T OR4K1 Silent p.V246V 0.18 TCGA-55-8205-01 14 20528403 20528404 - T OR4L1 Frame_Shift_Ins p.L69Ffs*20 0.12 TCGA-55-8205-01 14 21870664 21870664 T A CHD8 Splice_Site p.X1239_splice 0.12 TCGA-55-8205-01 14 22321003 22321003 G A TRAV8-3 Nonsense_Mutation p.W54* 0.12 TCGA-55-8205-01 14 24422899 24422899 C A DHRS4 5'UTR 0.25 TCGA-55-8205-01 14 30105610 30105610 T C PRKD1 Missense_Mutation p.D359G 0.13 deleterious(0.04) benign(0.211) TCGA-55-8205-01 14 31382750 31382750 C T STRN3 Missense_Mutation p.D452N 0.13 deleterious(0) probably_damaging(0.992) TCGA-55-8205-01 14 34247688 34247688 G C NPAS3 Missense_Mutation p.D355H 0.14 deleterious(0) probably_damaging(0.998) TCGA-55-8205-01 14 58915106 58915106 A T KIAA0586 Missense_Mutation p.S339C 0.08 tolerated(0.06) benign(0.019) TCGA-55-8205-01 14 67940296 67940296 G A TMEM229B Silent p.L115L 0.20 TCGA-55-8205-01 14 68189397 68189397 C A RDH12 Nonsense_Mutation p.S13* 0.08 TCGA-55-8205-01 14 69521069 69521069 C G DCAF5 Missense_Mutation p.K778N 0.14 deleterious_low_confidence(0) benign(0.224) TCGA-55-8205-01 14 75376546 75376546 C T RPS6KL1 Missense_Mutation p.G324S 0.17 tolerated(0.38) benign(0.024) TCGA-55-8205-01 14 75614401 75614401 A C TMED10 Missense_Mutation p.M126R 0.16 deleterious(0.05) possibly_damaging(0.904) TCGA-55-8205-01 14 77928557 77928557 C T AHSA1 Missense_Mutation p.S109F 0.12 deleterious(0) probably_damaging(1) TCGA-55-8205-01 14 77950852 77950852 G T ISM2 Silent p.L147L 0.16 TCGA-55-8205-01 14 78374209 78374209 G T ADCK1 Missense_Mutation p.G269W 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-8205-01 14 88737108 88737108 C A KCNK10 Intron 0.22 TCGA-55-8205-01 14 89039334 89039334 G T ZC3H14 Nonsense_Mutation p.E282* 0.17 TCGA-55-8205-01 14 94914808 94914809 CC A SERPINA11 Frame_Shift_Del p.E101Dfs*35 0.19 TCGA-55-8205-01 14 96707548 96707548 C A BDKRB2 Missense_Mutation p.L295M 0.11 deleterious(0.02) probably_damaging(0.991) TCGA-55-8205-01 15 20651252 20651252 C A HERC2P3 RNA 0.08 TCGA-55-8205-01 15 22945111 22945111 G T CYFIP1 Silent p.A394A 0.26 TCGA-55-8205-01 15 23191892 23191892 C A WHAMMP3 RNA 0.10 TCGA-55-8205-01 15 24923243 24923243 A T NPAP1 Missense_Mutation p.Q743H 0.11 tolerated(0.7) benign(0.003) TCGA-55-8205-01 15 25223574 25223574 C A SNRPN Missense_Mutation p.R236S 0.07 deleterious_low_confidence(0.02) unknown(0) TCGA-55-8205-01 15 25463919 25463919 G T SNORD115-28 5'Flank 0.10 TCGA-55-8205-01 15 33936681 33936681 G A RYR3 Silent p.P1242P 0.14 TCGA-55-8205-01 15 34047319 34047319 A G RYR3 Missense_Mutation p.Y2818C 0.14 possibly_damaging(0.806) TCGA-55-8205-01 15 34528917 34528917 C T SLC12A6 Missense_Mutation p.D1012N 0.08 tolerated(0.09) benign(0.275) TCGA-55-8205-01 15 38243401 38243401 T G TMCO5A Missense_Mutation p.L278R 0.11 deleterious(0) probably_damaging(0.996) TCGA-55-8205-01 15 40675159 40675159 C A KNSTRN Silent p.A41A 0.08 TCGA-55-8205-01 15 43585711 43585711 G C TGM7 Silent p.L43L 0.13 TCGA-55-8205-01 15 44887652 44887652 G C SPG11 Silent p.A1480A 0.22 TCGA-55-8205-01 15 48764762 48764762 C A FBN1 Missense_Mutation p.G1441V 0.12 probably_damaging(0.981) TCGA-55-8205-01 15 73552670 73552670 C A NEO1 Silent p.I754I 0.08 TCGA-55-8205-01 15 74219613 74219613 C G LOXL1 Missense_Mutation p.F163L 0.12 tolerated(0.39) probably_damaging(0.914) TCGA-55-8205-01 15 75185013 75185013 G C MPI Missense_Mutation p.E119D 0.09 tolerated(0.1) possibly_damaging(0.493) TCGA-55-8205-01 15 78211242 78211242 C G RP11-114H24.7 Intron 0.11 TCGA-55-8205-01 15 99460053 99460053 G A IGF1R Missense_Mutation p.E717K 0.10 tolerated(0.08) benign(0.392) TCGA-55-8205-01 16 19195166 19195166 C T SYT17 Silent p.S216S 0.09 TCGA-55-8205-01 16 20335398 20335398 C G GP2 Missense_Mutation p.W92S 0.06 deleterious(0) probably_damaging(1) TCGA-55-8205-01 16 20559780 20559780 G A ACSM2B Missense_Mutation p.P304S 0.08 deleterious(0) probably_damaging(0.994) TCGA-55-8205-01 16 20966286 20966286 C A DNAH3 Silent p.R3640R 0.15 TCGA-55-8205-01 16 22826255 22826255 G T HS3ST2 Missense_Mutation p.K108N 0.17 tolerated(0.4) benign(0.005) TCGA-55-8205-01 16 29825686 29825686 C A PRRT2 Missense_Mutation p.D304E 0.07 tolerated(0.11) probably_damaging(1) TCGA-55-8205-01 16 3016181 3016181 G C KREMEN2 Missense_Mutation p.E104Q 0.14 deleterious(0) probably_damaging(0.998) TCGA-55-8205-01 16 31371761 31371761 G A ITGAX Missense_Mutation p.G280S 0.16 deleterious(0.02) benign(0.157) TCGA-55-8205-01 16 31501658 31501658 C T SLC5A2 Silent p.F607F 0.13 TCGA-55-8205-01 16 3293510 3293510 A T MEFV Silent p.V659V 0.22 TCGA-55-8205-01 16 47117291 47117291 T C NETO2 Silent p.T473T 0.10 TCGA-55-8205-01 16 4815785 4815785 C G ZNF500 Silent p.R65R 0.18 TCGA-55-8205-01 16 55880516 55880516 C A CES5A Missense_Mutation p.M554I 0.18 tolerated(0.59) benign(0.007) TCGA-55-8205-01 16 614005 614005 C A C16orf11 Silent p.A237A 0.16 TCGA-55-8205-01 16 67316232 67316232 G T PLEKHG4 Silent p.V411V 0.14 TCGA-55-8205-01 16 67331511 67331511 C T KCTD19 Missense_Mutation p.E348K 0.10 deleterious(0) probably_damaging(0.962) TCGA-55-8205-01 16 67917910 67917910 G T EDC4 Silent p.R1355R 0.19 TCGA-55-8205-01 16 68224927 68224927 T A NFATC3 Silent p.I785I 0.19 TCGA-55-8205-01 16 70916725 70916725 G A HYDIN Silent p.I3351I 0.14 TCGA-55-8205-01 16 81095499 81095499 A C C16orf46 Missense_Mutation p.F152C 0.10 deleterious(0) possibly_damaging(0.889) TCGA-55-8205-01 16 81145944 81145944 C G PKD1L2 RNA 0.12 TCGA-55-8205-01 16 84199417 84199417 G T DNAAF1 Missense_Mutation p.G298W 0.07 deleterious(0) probably_damaging(0.995) TCGA-55-8205-01 16 86546626 86546626 G T FOXF1 Missense_Mutation p.A359S 0.12 tolerated(1) benign(0.001) TCGA-55-8205-01 16 9857910 9857910 G T GRIN2A Missense_Mutation p.T1164K 0.19 tolerated(0.91) benign(0.127) TCGA-55-8205-01 17 10357076 10357076 G T MYH4 Missense_Mutation p.L940M 0.09 deleterious(0) benign(0.05) TCGA-55-8205-01 17 10533483 10533483 C G MYH3 Missense_Mutation p.E1830Q 0.10 deleterious(0.01) benign(0.149) TCGA-55-8205-01 17 10535154 10535154 C G MYH3 Missense_Mutation p.E1712D 0.14 tolerated(0.13) probably_damaging(0.983) TCGA-55-8205-01 17 10608316 10608316 G A ADPRM Missense_Mutation p.D25N 0.07 deleterious(0) probably_damaging(1) TCGA-55-8205-01 17 18882133 18882133 C A FAM83G Silent p.R282R 0.24 TCGA-55-8205-01 17 21731066 21731066 G T UBBP4 Missense_Mutation p.G123V 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-8205-01 17 29562635 29562635 C T NF1 Silent p.L1239L 0.11 TCGA-55-8205-01 17 29654691 29654691 C T NF1 Nonsense_Mutation p.Q1815* 0.11 TCGA-55-8205-01 17 36714551 36714551 C A SRCIN1 Nonsense_Mutation p.E705* 0.26 TCGA-55-8205-01 17 36714552 36714552 C A SRCIN1 Missense_Mutation p.Q704H 0.24 tolerated(0.07) benign(0.081) TCGA-55-8205-01 17 3704482 3704482 C A ITGAE 5'UTR 0.24 TCGA-55-8205-01 17 37074911 37074911 C T LASP1 Silent p.S222S 0.09 TCGA-55-8205-01 17 39471583 39471583 C A KRTAP17-1 3'UTR 0.08 TCGA-55-8205-01 17 42338086 42338086 C A SLC4A1 Missense_Mutation p.G89V 0.09 deleterious(0.03) possibly_damaging(0.51) TCGA-55-8205-01 17 42990693 42990693 A G GFAP Missense_Mutation p.Y242H 0.14 deleterious(0) possibly_damaging(0.615) TCGA-55-8205-01 17 48268221 48268221 C A COL1A1 Missense_Mutation p.G767V 0.13 probably_damaging(0.964) TCGA-55-8205-01 17 48433491 48433491 C A XYLT2 Missense_Mutation p.L451I 0.09 tolerated(0.1) probably_damaging(0.999) TCGA-55-8205-01 17 48433493 48433493 C A XYLT2 Silent p.L451L 0.10 TCGA-55-8205-01 17 49280558 49280558 A C MBTD1 Silent p.A257A 0.17 TCGA-55-8205-01 17 53068288 53068288 G T STXBP4 Missense_Mutation p.Q50H 0.06 deleterious(0.05) benign(0.182) TCGA-55-8205-01 17 56274597 56274597 C A EPX Missense_Mutation p.R367S 0.11 tolerated(0.16) benign(0.021) TCGA-55-8205-01 17 56355208 56355208 C T MPO Missense_Mutation p.R395H 0.13 tolerated(0.08) benign(0.416) TCGA-55-8205-01 17 61561749 61561749 G T ACE Missense_Mutation p.G590C 0.13 deleterious(0) benign(0.165) TCGA-55-8205-01 17 6338338 6338338 G A AIPL1 Silent p.T29T 0.18 TCGA-55-8205-01 17 6683452 6683452 C G FBXO39 Missense_Mutation p.L89V 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-55-8205-01 17 6683885 6683885 A G FBXO39 Missense_Mutation p.Y233C 0.22 deleterious(0) probably_damaging(0.999) TCGA-55-8205-01 17 71165865 71165865 T A SSTR2 Missense_Mutation p.M136K 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-8205-01 17 71354224 71354224 G A SDK2 Missense_Mutation p.P1863S 0.17 tolerated(0.09) benign(0.252) TCGA-55-8205-01 17 7189843 7189843 G A SLC2A4 Silent p.T475T 0.11 TCGA-55-8205-01 17 7366134 7366134 C T ZBTB4 Missense_Mutation p.E723K 0.11 benign(0.026) TCGA-55-8205-01 17 7369062 7369062 C T ZBTB4 Silent p.T353T 0.20 TCGA-55-8205-01 17 7578235 7578235 T C TP53 Missense_Mutation p.Y205C 0.16 deleterious(0) probably_damaging(0.99) TCGA-55-8205-01 17 7606072 7606072 C G WRAP53 Silent p.L392L 0.14 TCGA-55-8205-01 17 78293205 78293205 C G RNF213 Intron 0.07 TCGA-55-8205-01 17 8455463 8455463 C G MYH10 Splice_Site p.X274_splice 0.14 TCGA-55-8205-01 17 8638459 8638459 C T CCDC42 Silent p.E276E 0.11 TCGA-55-8205-01 18 22805674 22805674 G T ZNF521 Silent p.S736S 0.09 TCGA-55-8205-01 18 28612170 28612170 T C DSC3 Missense_Mutation p.I48V 0.22 tolerated(0.15) benign(0.005) TCGA-55-8205-01 18 67508560 67508560 C A DOK6 Missense_Mutation p.Q313K 0.24 tolerated_low_confidence(0.39) benign(0.006) TCGA-55-8205-01 19 1005278 1005278 C A GRIN3B Missense_Mutation p.T593N 0.22 deleterious(0) probably_damaging(0.998) TCGA-55-8205-01 19 1011098 1011098 G C TMEM259 Missense_Mutation p.I438M 0.33 deleterious(0) probably_damaging(0.993) TCGA-55-8205-01 19 1011101 1011101 G A TMEM259 Silent p.F437F 0.33 TCGA-55-8205-01 19 10823666 10823666 G T QTRT1 Missense_Mutation p.D337Y 0.43 deleterious(0.01) possibly_damaging(0.757) TCGA-55-8205-01 19 12187318 12187318 C T ZNF844 Silent p.H461H 0.23 TCGA-55-8205-01 19 1508479 1508479 G T ADAMTSL5 Missense_Mutation p.P151Q 0.33 tolerated(0.08) benign(0.04) TCGA-55-8205-01 19 15367042 15367042 G C BRD4 Silent p.L528L 0.16 TCGA-55-8205-01 19 16268467 16268467 G C HSH2D 3'Flank 0.19 TCGA-55-8205-01 19 17056455 17056455 G C CPAMD8 Missense_Mutation p.C946W 0.09 deleterious(0) probably_damaging(0.987) TCGA-55-8205-01 19 17367437 17367437 A G USHBP1 Missense_Mutation p.L438P 0.34 deleterious(0.01) possibly_damaging(0.83) TCGA-55-8205-01 19 17476583 17476583 C A PLVAP Missense_Mutation p.D231Y 0.30 deleterious(0.01) probably_damaging(0.954) TCGA-55-8205-01 19 22271471 22271471 A C ZNF257 Missense_Mutation p.K307Q 0.25 deleterious(0.03) probably_damaging(0.97) TCGA-55-8205-01 19 22363968 22363970 AGG TT ZNF676 Frame_Shift_Del p.L184Ifs*34 0.18 TCGA-55-8205-01 19 3179881 3179881 C G S1PR4 Missense_Mutation p.S364C 0.17 deleterious(0.02) probably_damaging(0.962) TCGA-55-8205-01 19 34891063 34891063 C T GPI 3'UTR 0.20 TCGA-55-8205-01 19 375892 375892 C T THEG Missense_Mutation p.G27S 0.32 tolerated(0.38) benign(0.088) TCGA-55-8205-01 19 38976739 38976739 T A RYR1 Missense_Mutation p.L1815Q 0.40 probably_damaging(0.991) TCGA-55-8205-01 19 43773548 43773548 G A PSG9 Silent p.R12R 0.23 TCGA-55-8205-01 19 43858530 43858530 C A CD177 Missense_Mutation p.P122Q 0.19 tolerated(0.09) benign(0.372) TCGA-55-8205-01 19 44099475 44099475 C G IRGQ Missense_Mutation p.G6R 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-8205-01 19 44273706 44273706 C G KCNN4 Missense_Mutation p.E313Q 0.09 deleterious(0.02) possibly_damaging(0.582) TCGA-55-8205-01 19 47969444 47969444 C T SLC8A2 Missense_Mutation p.V73M 0.35 deleterious(0.01) possibly_damaging(0.721) TCGA-55-8205-01 19 51378024 51378024 G C AC037199.1 Nonsense_Mutation p.S6* 0.10 TCGA-55-8205-01 19 53668841 53668841 T C ZNF665 Missense_Mutation p.Q301R 0.30 tolerated(0.34) benign(0.023) TCGA-55-8205-01 19 54197707 54197707 C - MIR526B RNA 0.14 TCGA-55-8205-01 19 54394987 54394987 A C PRKCG Missense_Mutation p.K197Q 0.28 deleterious(0.04) benign(0.322) TCGA-55-8205-01 19 54849400 54849400 C T LILRA4 Silent p.L154L 0.17 TCGA-55-8205-01 19 56363580 56363580 C G NLRP4 Missense_Mutation p.T45S 0.12 tolerated(0.07) benign(0.411) TCGA-55-8205-01 19 56895447 56895447 C G ZNF582 Missense_Mutation p.E447Q 0.10 deleterious(0.02) benign(0.261) TCGA-55-8205-01 19 56953784 56953784 G C ZNF667 Missense_Mutation p.H194D 0.21 deleterious(0) probably_damaging(0.998) TCGA-55-8205-01 19 5997191 5997191 G A RFX2 Silent p.S631S 0.31 TCGA-55-8205-01 19 7075719 7075719 G C ZNF557 Missense_Mutation p.E29Q 0.15 tolerated(0.34) benign(0.022) TCGA-55-8205-01 19 7684939 7684939 C G XAB2 Missense_Mutation p.Q763H 0.17 tolerated(0.13) benign(0.004) TCGA-55-8205-01 19 8386927 8386927 G C RPS28 Missense_Mutation p.E60Q 0.14 deleterious(0.02) unknown(0) TCGA-55-8205-01 19 8953464 8953464 G A MBD3L1 Missense_Mutation p.R37K 0.40 tolerated(0.17) benign(0.044) TCGA-55-8205-01 19 9046229 9046229 G T MUC16 Nonsense_Mutation p.S11801* 0.20 TCGA-55-8205-01 19 9083443 9083443 C T MUC16 Missense_Mutation p.G2791E 0.22 unknown(0) TCGA-55-8205-01 19 9213806 9213806 G T OR7G2 Silent p.T59T 0.32 TCGA-55-8205-01 1 114523872 114523872 G A OLFML3 Silent p.E234E 0.07 TCGA-55-8205-01 1 149915757 149915757 C A OTUD7B Nonstop_Mutation p.*844Lext*14 0.13 TCGA-55-8205-01 1 150936131 150936131 A T SETDB1 Nonsense_Mutation p.K1195* 0.10 TCGA-55-8205-01 1 155883978 155883978 C G KIAA0907 Missense_Mutation p.L593F 0.06 tolerated_low_confidence(0.07) possibly_damaging(0.696) TCGA-55-8205-01 1 156642365 156642365 C T NES Missense_Mutation p.V539I 0.09 tolerated(0.17) benign(0.124) TCGA-55-8205-01 1 158590172 158590172 G T SPTA1 Missense_Mutation p.P2069T 0.17 deleterious(0.01) probably_damaging(0.914) TCGA-55-8205-01 1 161954721 161954721 G C OLFML2B Missense_Mutation p.N508K 0.11 deleterious(0) possibly_damaging(0.755) TCGA-55-8205-01 1 162824951 162824951 G C C1orf110 Silent p.P171P 0.12 TCGA-55-8205-01 1 165177307 165177307 C T LMX1A Silent p.L270L 0.16 TCGA-55-8205-01 1 168698317 168698317 G A DPT Silent p.D32D 0.11 TCGA-55-8205-01 1 177001653 177001653 G T ASTN1 Silent p.V268V 0.10 TCGA-55-8205-01 1 181767568 181767568 C A CACNA1E Silent p.G2180G 0.13 TCGA-55-8205-01 1 182787753 182787753 C T NPL Missense_Mutation p.L179F 0.12 deleterious(0.03) probably_damaging(0.967) TCGA-55-8205-01 1 196577426 196577426 T G KCNT2 Missense_Mutation p.E5A 0.13 deleterious_low_confidence(0.01) benign(0.042) TCGA-55-8205-01 1 200376921 200376921 G A ZNF281 Missense_Mutation p.S638L 0.11 deleterious(0) possibly_damaging(0.528) TCGA-55-8205-01 1 200959747 200959747 A G KIF21B Missense_Mutation p.M931T 0.11 deleterious(0.02) possibly_damaging(0.885) TCGA-55-8205-01 1 202288096 202288096 C A LGR6 Missense_Mutation p.P889T 0.09 deleterious(0.01) benign(0.059) TCGA-55-8205-01 1 20302260 20302260 C A PLA2G2A Silent p.T123T 0.18 TCGA-55-8205-01 1 215259724 215259724 C A KCNK2 Missense_Mutation p.D20E 0.23 tolerated_low_confidence(0.07) probably_damaging(0.996) TCGA-55-8205-01 1 216011375 216011375 G T USH2A Missense_Mutation p.P3110Q 0.08 probably_damaging(0.999) TCGA-55-8205-01 1 216424381 216424381 C A USH2A Missense_Mutation p.Q677H 0.11 benign(0.071) TCGA-55-8205-01 1 220088757 220088757 C A SLC30A10 3'UTR 0.07 TCGA-55-8205-01 1 220088800 220088800 C G SLC30A10 Silent p.T483T 0.11 TCGA-55-8205-01 1 220284192 220284192 G T IARS2 Silent p.P464P 0.15 TCGA-55-8205-01 1 227075801 227075801 G T PSEN2 Missense_Mutation p.G170C 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-8205-01 1 228467143 228467143 C T OBSCN Missense_Mutation p.S2894L 0.20 possibly_damaging(0.841) TCGA-55-8205-01 1 231401781 231401781 A C GNPAT Missense_Mutation p.E265A 0.17 deleterious(0) probably_damaging(0.986) TCGA-55-8205-01 1 240421289 240421289 A T FMN2 Silent p.I1370I 0.07 TCGA-55-8205-01 1 247615009 247615009 G T OR2B11 Silent p.S92S 0.14 TCGA-55-8205-01 1 248309247 248309247 C A OR2M5 Silent p.R266R 0.09 TCGA-55-8205-01 1 248845053 248845053 G T OR14I1 Missense_Mutation p.L185M 0.13 deleterious(0) probably_damaging(0.997) TCGA-55-8205-01 1 35223067 35223067 G C GJB5 Missense_Mutation p.D46H 0.13 deleterious(0.01) probably_damaging(0.993) TCGA-55-8205-01 1 3544135 3544135 C T TPRG1L Missense_Mutation p.P181L 0.22 deleterious(0.03) probably_damaging(1) TCGA-55-8205-01 1 52798536 52798536 G A ZFYVE9 Missense_Mutation p.D1179N 0.08 deleterious(0.04) probably_damaging(0.997) TCGA-55-8205-01 1 67795367 67795367 T A IL12RB2 Silent p.L254L 0.12 TCGA-55-8205-01 1 70654905 70654905 T C LRRC40 Missense_Mutation p.Q68R 0.11 tolerated(0.24) benign(0.013) TCGA-55-8205-01 1 74492577 74492577 T C LRRIQ3 Missense_Mutation p.R599G 0.22 deleterious(0.01) benign(0.172) TCGA-55-8205-01 1 76347006 76347006 G T MSH4 Missense_Mutation p.M619I 0.08 tolerated(0.06) possibly_damaging(0.593) TCGA-55-8205-01 1 7826645 7826645 G A CAMTA1 3'UTR 0.25 TCGA-55-8205-01 1 82445624 82445624 T C LPHN2 Silent p.S1014S 0.12 TCGA-55-8205-01 1 86921073 86921073 G C CLCA2 Missense_Mutation p.D899H 0.15 deleterious(0.04) possibly_damaging(0.907) TCGA-55-8205-01 1 92200336 92200336 C A TGFBR3 Nonsense_Mutation p.E189* 0.06 TCGA-55-8205-01 1 99772020 99772020 G T LPPR4 Missense_Mutation p.M582I 0.26 deleterious(0) benign(0.297) TCGA-55-8205-01 20 18165421 18165421 C G CSRP2BP Missense_Mutation p.I720M 0.09 tolerated(0.06) possibly_damaging(0.574) TCGA-55-8205-01 20 21337264 21337264 G A XRN2 Missense_Mutation p.G720E 0.19 deleterious(0) probably_damaging(0.997) TCGA-55-8205-01 20 21687013 21687013 C T PAX1 Intron 0.19 TCGA-55-8205-01 20 21687581 21687581 C G PAX1 Silent p.G264G 0.11 TCGA-55-8205-01 20 23350781 23350781 G T GZF1 Silent p.S613S 0.15 TCGA-55-8205-01 20 2411157 2411157 A G TGM6 Missense_Mutation p.I582V 0.13 deleterious(0.04) benign(0.181) TCGA-55-8205-01 20 3102242 3102242 G A UBOX5 Missense_Mutation p.T348M 0.15 deleterious(0.04) benign(0.27) TCGA-55-8205-01 20 31829263 31829263 G C BPIFA1 Missense_Mutation p.L218F 0.08 deleterious(0) probably_damaging(0.999) TCGA-55-8205-01 20 33529522 33529522 G A GSS Missense_Mutation p.S201L 0.09 deleterious(0.03) possibly_damaging(0.619) TCGA-55-8205-01 20 33580975 33580975 C A MYH7B Missense_Mutation p.L794M 0.07 probably_damaging(0.989) TCGA-55-8205-01 20 50776659 50776659 C G ZFP64 Intron 0.08 TCGA-55-8205-01 20 56735893 56735893 C T C20orf85 3'UTR 0.11 TCGA-55-8205-01 20 58330261 58330261 C A PHACTR3 Missense_Mutation p.P128H 0.14 tolerated(0.18) benign(0.005) TCGA-55-8205-01 20 61918947 61918947 G T ARFGAP1 Missense_Mutation p.G323C 0.10 tolerated(0.07) possibly_damaging(0.851) TCGA-55-8205-01 20 61981644 61981644 C A CHRNA4 Missense_Mutation p.E373D 0.12 tolerated(0.15) benign(0.042) TCGA-55-8205-01 21 10863034 10863034 G T IGHV1OR21-1 Silent p.T110T 0.10 TCGA-55-8205-01 21 31709460 31709460 A T KRTAP27-1 Missense_Mutation p.L176Q 0.20 deleterious(0.02) probably_damaging(0.93) TCGA-55-8205-01 21 32007760 32007760 T C KRTAP20-2 Missense_Mutation p.W60R 0.08 unknown(0) TCGA-55-8205-01 21 32253806 32253806 C A KRTAP11-1 Missense_Mutation p.R13M 0.13 deleterious(0.01) probably_damaging(0.973) TCGA-55-8205-01 22 17690470 17690470 G T CECR1 Missense_Mutation p.T33K 0.10 tolerated(0.84) benign(0.003) TCGA-55-8205-01 22 19808806 19808806 C G GNB1L Missense_Mutation p.A25P 0.09 tolerated(0.06) possibly_damaging(0.74) TCGA-55-8205-01 22 21989501 21989501 A G CCDC116 Silent p.R383R 0.14 TCGA-55-8205-01 22 32464000 32464000 A G SLC5A1 Missense_Mutation p.Y120C 0.16 deleterious(0) probably_damaging(1) TCGA-55-8205-01 22 37465272 37465272 C T TMPRSS6 Missense_Mutation p.E661K 0.14 deleterious(0.03) possibly_damaging(0.804) TCGA-55-8205-01 22 42605682 42605682 T A TCF20 Missense_Mutation p.E1877V 0.14 probably_damaging(0.999) TCGA-55-8205-01 22 43603584 43603584 C T SCUBE1 Missense_Mutation p.D924N 0.11 deleterious(0) probably_damaging(0.999) TCGA-55-8205-01 22 46724609 46724609 C A GTSE1 Missense_Mutation p.N583K 0.06 tolerated(0.49) benign(0.112) TCGA-55-8205-01 2 103317655 103317655 G C SLC9A2 Silent p.G571G 0.19 TCGA-55-8205-01 2 103343412 103343412 C A MFSD9 Nonsense_Mutation p.G107* 0.11 TCGA-55-8205-01 2 108624949 108624949 A T SLC5A7 Silent p.P308P 0.24 TCGA-55-8205-01 2 110962518 110962518 G C NPHP1 Missense_Mutation p.L10V 0.12 deleterious(0.02) probably_damaging(0.986) TCGA-55-8205-01 2 114691893 114691893 A C ACTR3 Missense_Mutation p.Q157P 0.09 tolerated(0.09) benign(0.008) TCGA-55-8205-01 2 128342362 128342362 C A MYO7B Missense_Mutation p.L522I 0.16 tolerated(0.3) benign(0.003) TCGA-55-8205-01 2 131981311 131981311 G T POTEE Intron 0.14 TCGA-55-8205-01 2 136620241 136620241 G T MCM6 Missense_Mutation p.L386I 0.09 deleterious(0.03) probably_damaging(0.994) TCGA-55-8205-01 2 1488606 1488606 C A TPO Missense_Mutation p.P526Q 0.07 deleterious(0) probably_damaging(0.998) TCGA-55-8205-01 2 151326659 151326659 C A RND3 Missense_Mutation p.A193S 0.08 deleterious(0.02) probably_damaging(0.996) TCGA-55-8205-01 2 152977294 152977294 T G STAM2 Missense_Mutation p.N458H 0.11 deleterious_low_confidence(0.03) possibly_damaging(0.794) TCGA-55-8205-01 2 155265539 155265539 G T GALNT13 Missense_Mutation p.R447L 0.10 deleterious(0.02) benign(0.27) TCGA-55-8205-01 2 160661568 160661568 G T LY75 Intron 0.34 TCGA-55-8205-01 2 163361034 163361034 T C KCNH7 Silent p.S349S 0.25 TCGA-55-8205-01 2 179437106 179437106 C G TTN Missense_Mutation p.E24585Q 0.31 TCGA-55-8205-01 2 179474535 179474535 C T TTN Silent p.L17205L 0.08 TCGA-55-8205-01 2 179638667 179638667 G C TTN Missense_Mutation p.H2410D 0.06 TCGA-55-8205-01 2 191859800 191859800 G A STAT1 Nonsense_Mutation p.Q311* 0.08 TCGA-55-8205-01 2 196851788 196851788 A T DNAH7 Splice_Site p.X585_splice 0.22 TCGA-55-8205-01 2 200820957 200820957 G A C2orf47 Missense_Mutation p.E146K 0.09 tolerated(0.17) benign(0.035) TCGA-55-8205-01 2 218924996 218924996 G T CXCR2P1 RNA 0.08 TCGA-55-8205-01 2 219617610 219617610 G A TTLL4 Missense_Mutation p.R1034H 0.19 deleterious(0.04) benign(0.368) TCGA-55-8205-01 2 220047145 220047145 C T FAM134A Nonsense_Mutation p.Q476* 0.26 TCGA-55-8205-01 2 220498110 220498110 G - SLC4A3 Frame_Shift_Del p.V492Cfs*39 0.12 TCGA-55-8205-01 2 228769682 228769682 C A DAW1 Missense_Mutation p.T229N 0.13 tolerated(0.33) benign(0.098) TCGA-55-8205-01 2 230456419 230456419 C T DNER Silent p.Q154Q 0.09 TCGA-55-8205-01 2 230456481 230456481 G T DNER Missense_Mutation p.Q134K 0.28 deleterious(0.03) benign(0.231) TCGA-55-8205-01 2 233405354 233405354 G C CHRNG Missense_Mutation p.E95Q 0.17 deleterious(0.04) benign(0.306) TCGA-55-8205-01 2 233839369 233839369 T A NGEF Nonsense_Mutation p.R78* 0.11 TCGA-55-8205-01 2 234835184 234835184 T C TRPM8 Translation_Start_Site p.M1? 0.15 deleterious_low_confidence(0) benign(0.062) TCGA-55-8205-01 2 236877218 236877218 G A AGAP1 Silent p.K532K 0.16 TCGA-55-8205-01 2 238274526 238274526 C G COL6A3 Missense_Mutation p.V1885L 0.15 probably_damaging(0.994) TCGA-55-8205-01 2 241078647 241078647 G C OTOS Missense_Mutation p.F70L 0.13 tolerated(0.11) probably_damaging(0.987) TCGA-55-8205-01 2 27373006 27373006 G T TCF23 Nonsense_Mutation p.E80* 0.14 TCGA-55-8205-01 2 27461929 27461929 G A CAD Silent p.E1694E 0.14 TCGA-55-8205-01 2 29606604 29606604 T A ALK Missense_Mutation p.S426C 0.15 deleterious(0.02) probably_damaging(0.968) TCGA-55-8205-01 2 32362026 32362026 G C SPAST Missense_Mutation p.E468Q 0.17 tolerated(0.18) possibly_damaging(0.893) TCGA-55-8205-01 2 37873453 37873453 G T CDC42EP3 Missense_Mutation p.S93Y 0.25 deleterious(0.01) probably_damaging(0.979) TCGA-55-8205-01 2 37873561 37873561 G C CDC42EP3 Missense_Mutation p.S57C 0.22 deleterious(0) probably_damaging(1) TCGA-55-8205-01 2 40657121 40657121 C A SLC8A1 Missense_Mutation p.M100I 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-8205-01 2 45233522 45233522 C A SIX2 Silent p.T221T 0.19 TCGA-55-8205-01 2 54895714 54895716 TCC - SPTBN1 3'UTR 0.48 TCGA-55-8205-01 2 55252661 55252661 C T RTN4 Silent p.T858T 0.18 TCGA-55-8205-01 2 74452135 74452135 G C SLC4A5 Intron 0.24 TCGA-55-8205-01 2 74600066 74600066 G A DCTN1 Missense_Mutation p.R148W 0.14 deleterious(0) benign(0.31) TCGA-55-8205-01 2 75186537 75186537 C T POLE4 Nonsense_Mutation p.Q95* 0.26 TCGA-55-8205-01 2 80773163 80773163 A G CTNNA2 Silent p.S505S 0.14 TCGA-55-8205-01 2 84658657 84658657 G A SUCLG1 Missense_Mutation p.A267V 0.07 deleterious(0) possibly_damaging(0.901) TCGA-55-8205-01 2 88422546 88422546 C G FABP1 3'UTR 0.11 TCGA-55-8205-01 2 89544571 89544571 G T IGKV2-30 Missense_Mutation p.S18Y 0.10 deleterious(0) possibly_damaging(0.825) TCGA-55-8205-01 2 96795868 96795868 G - ASTL Frame_Shift_Del p.F218Lfs*10 0.17 TCGA-55-8205-01 3 105269047 105269047 C G ALCAM Missense_Mutation p.T484S 0.26 tolerated(0.24) benign(0.401) TCGA-55-8205-01 3 112357597 112357597 T C CCDC80 Missense_Mutation p.R386G 0.18 deleterious(0.01) benign(0.021) TCGA-55-8205-01 3 112993295 112993295 C A BOC Silent p.G436G 0.23 TCGA-55-8205-01 3 120347140 120347140 C - HGD 3'UTR 0.16 TCGA-55-8205-01 3 120998738 120998738 A G STXBP5L Missense_Mutation p.Y682C 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-8205-01 3 122215283 122215283 C T KPNA1 Splice_Site p.X43_splice 0.11 TCGA-55-8205-01 3 129009527 129009527 T A HMCES Silent p.P111P 0.09 TCGA-55-8205-01 3 130095080 130095080 G T COL6A5 Missense_Mutation p.G23V 0.10 deleterious(0.04) benign(0.01) TCGA-55-8205-01 3 131261465 131261465 G T CPNE4 Nonsense_Mutation p.S492* 0.15 TCGA-55-8205-01 3 132213055 132213055 C T DNAJC13 Missense_Mutation p.S1298L 0.08 deleterious(0) possibly_damaging(0.758) TCGA-55-8205-01 3 132213090 132213090 C G DNAJC13 Missense_Mutation p.Q1310E 0.09 tolerated(0.97) benign(0.002) TCGA-55-8205-01 3 142681360 142681360 G T PAQR9 Silent p.L273L 0.20 TCGA-55-8205-01 3 148759384 148759384 C G HLTF Missense_Mutation p.D757H 0.17 deleterious(0) probably_damaging(1) TCGA-55-8205-01 3 150644571 150644571 C G CLRN1 3'Flank 0.10 TCGA-55-8205-01 3 157160340 157160340 C G PTX3 Missense_Mutation p.L240V 0.11 deleterious(0) probably_damaging(0.936) TCGA-55-8205-01 3 160148451 160148451 G A SMC4 Missense_Mutation p.E954K 0.11 tolerated(0.56) benign(0.016) TCGA-55-8205-01 3 160148457 160148457 G A SMC4 Missense_Mutation p.D956N 0.12 tolerated(0.32) benign(0.003) TCGA-55-8205-01 3 161214743 161214743 C A OTOL1 Missense_Mutation p.P50T 0.14 tolerated(0.78) unknown(0) TCGA-55-8205-01 3 164737533 164737533 C A SI Missense_Mutation p.A1094S 0.20 tolerated(0.07) benign(0.041) TCGA-55-8205-01 3 164737536 164737536 A T SI Missense_Mutation p.F1093I 0.20 deleterious(0.02) benign(0.107) TCGA-55-8205-01 3 164748577 164748577 C G SI Missense_Mutation p.E939Q 0.07 tolerated(0.08) benign(0.187) TCGA-55-8205-01 3 173525560 173525560 G C NLGN1 Missense_Mutation p.S195T 0.15 tolerated(0.18) possibly_damaging(0.883) TCGA-55-8205-01 3 179334811 179334811 A G NDUFB5 Silent p.P107P 0.10 TCGA-55-8205-01 3 183006981 183006981 G C MCF2L2 Missense_Mutation p.S568C 0.09 deleterious(0.03) possibly_damaging(0.57) TCGA-55-8205-01 3 184090559 184090559 G T THPO Silent p.T268T 0.07 TCGA-55-8205-01 3 186331091 186331091 G - AHSG Frame_Shift_Del p.G55Dfs*6 0.16 TCGA-55-8205-01 3 187440305 187440305 T C BCL6 Missense_Mutation p.K688E 0.06 deleterious(0) probably_damaging(0.997) TCGA-55-8205-01 3 194118339 194118339 A T GP5 Missense_Mutation p.F225I 0.12 deleterious(0) benign(0.01) TCGA-55-8205-01 3 194126747 194126747 G T ATP13A3 Silent p.L1194L 0.10 TCGA-55-8205-01 3 196735714 196735714 G A MFI2 Nonsense_Mutation p.Q550* 0.24 TCGA-55-8205-01 3 19975260 19975260 A T EFHB Missense_Mutation p.M84K 0.14 tolerated_low_confidence(0.48) benign(0.048) TCGA-55-8205-01 3 38616821 38616821 G C SCN5A Missense_Mutation p.I1211M 0.48 deleterious(0.02) possibly_damaging(0.813) TCGA-55-8205-01 3 39453811 39453811 C T RPSA Silent p.P280P 0.16 TCGA-55-8205-01 3 45988828 45988828 T A CXCR6 Silent p.P285P 0.32 TCGA-55-8205-01 3 4714902 4714902 G A ITPR1 Missense_Mutation p.D748N 0.12 deleterious(0.03) possibly_damaging(0.756) TCGA-55-8205-01 3 48476263 48476263 G C CCDC51 Silent p.L92L 0.12 TCGA-55-8205-01 3 48501964 48501964 C T ATRIP Missense_Mutation p.S504F 0.12 deleterious(0.03) possibly_damaging(0.466) TCGA-55-8205-01 3 48685886 48685886 C T CELSR3 Silent p.L2262L 0.30 TCGA-55-8205-01 3 48810455 48810455 G A PRKAR2A Missense_Mutation p.A210V 0.16 deleterious(0) probably_damaging(0.998) TCGA-55-8205-01 3 49692590 49692590 G A BSN Missense_Mutation p.M1867I 0.25 unknown(0) TCGA-55-8205-01 3 5164178 5164178 G A ARL8B Missense_Mutation p.D10N 0.17 tolerated(0.26) benign(0.19) TCGA-55-8205-01 3 71021828 71021828 C G FOXP1 Splice_Site p.X513_splice 0.12 TCGA-55-8205-01 3 77089916 77089916 G C ROBO2 Intron 0.10 TCGA-55-8205-01 3 77612412 77612412 C T ROBO2 Silent p.V554V 0.11 TCGA-55-8205-01 3 96706414 96706414 G A EPHA6 Missense_Mutation p.G231R 0.10 deleterious(0.02) possibly_damaging(0.895) TCGA-55-8205-01 4 106604352 106604352 T C INTS12 Silent p.K309K 0.13 TCGA-55-8205-01 4 125592017 125592017 T G ANKRD50 Silent p.A805A 0.19 TCGA-55-8205-01 4 134072723 134072723 C G PCDH10 Missense_Mutation p.N476K 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-8205-01 4 15443997 15443997 C A C1QTNF7 Silent p.S155S 0.09 TCGA-55-8205-01 4 187455012 187455012 T C MTNR1A Missense_Mutation p.Y295C 0.18 deleterious(0.02) probably_damaging(1) TCGA-55-8205-01 4 1985623 1985623 C G NELFA Missense_Mutation p.Q429H 0.23 tolerated(0.06) possibly_damaging(0.891) TCGA-55-8205-01 4 20568925 20568925 C - SLIT2 Frame_Shift_Del p.L923Yfs*52 0.23 TCGA-55-8205-01 4 20568950 20568950 G T SLIT2 Missense_Mutation p.G931C 0.18 deleterious(0) probably_damaging(0.992) TCGA-55-8205-01 4 3117083 3117083 G A HTT Missense_Mutation p.R267Q 0.07 probably_damaging(0.998) TCGA-55-8205-01 4 55154985 55154985 C T PDGFRA Silent p.G898G 0.10 TCGA-55-8205-01 4 62800635 62800635 G A LPHN3 Silent p.Q662Q 0.16 TCGA-55-8205-01 4 62800643 62800643 C T LPHN3 Missense_Mutation p.A665V 0.12 tolerated(0.26) benign(0.153) TCGA-55-8205-01 4 66270112 66270112 G A EPHA5 Silent p.I590I 0.15 TCGA-55-8205-01 4 70146307 70146307 C G UGT2B28 Missense_Mutation p.T30S 0.39 deleterious(0) benign(0.001) TCGA-55-8205-01 4 74736296 74736296 A T CXCL1 3'UTR 0.24 TCGA-55-8205-01 4 7736087 7736087 C G SORCS2 Silent p.L1099L 0.35 TCGA-55-8205-01 4 77969604 77969604 C G CCNI Missense_Mutation p.R301T 0.19 tolerated(0.16) benign(0.004) TCGA-55-8205-01 4 90171329 90171329 G T GPRIN3 5'UTR 0.11 TCGA-55-8205-01 4 95155122 95155122 A T SMARCAD1 Missense_Mutation p.D129V 0.15 deleterious_low_confidence(0) possibly_damaging(0.711) TCGA-55-8205-01 4 99338644 99338644 G C RAP1GDS1 Missense_Mutation p.R346T 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-55-8205-01 5 128351749 128351749 G T SLC27A6 Missense_Mutation p.G381W 0.17 deleterious(0) probably_damaging(1) TCGA-55-8205-01 5 132406171 132406182 GTTGACTGTGTT - HSPA4 In_Frame_Del p.D139_V142del 0.09 TCGA-55-8205-01 5 137419793 137419793 T C WNT8A Silent p.F5F 0.09 TCGA-55-8205-01 5 140220940 140220940 T G PCDHA8 Missense_Mutation p.W12G 0.22 tolerated_low_confidence(0.22) benign(0) TCGA-55-8205-01 5 140256382 140256382 C A PCDHA12 Missense_Mutation p.S442Y 0.27 deleterious_low_confidence(0.04) possibly_damaging(0.535) TCGA-55-8205-01 5 140480844 140480844 A T PCDHB3 Missense_Mutation p.E204V 0.23 deleterious_low_confidence(0.02) benign(0.112) TCGA-55-8205-01 5 140554630 140554630 C G PCDHB7 Missense_Mutation p.S738R 0.09 deleterious_low_confidence(0.03) benign(0.235) TCGA-55-8205-01 5 140563824 140563824 C A PCDHB16 Missense_Mutation p.P564T 0.09 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-55-8205-01 5 140604936 140604936 A T PCDHB14 Missense_Mutation p.H620L 0.18 deleterious_low_confidence(0) benign(0.115) TCGA-55-8205-01 5 140730792 140730792 T C PCDHGB1 Missense_Mutation p.V322A 0.12 tolerated(0.23) benign(0.403) TCGA-55-8205-01 5 140750780 140750780 C G PCDHGB3 Missense_Mutation p.I273M 0.11 deleterious(0.03) benign(0.241) TCGA-55-8205-01 5 140884972 140884972 C T PCDHGB6 Silent p.G830G 0.21 TCGA-55-8205-01 5 145638105 145638105 G C RBM27 Missense_Mutation p.R563T 0.16 deleterious(0) probably_damaging(0.994) TCGA-55-8205-01 5 145718644 145718644 T A POU4F3 5'UTR 0.13 TCGA-55-8205-01 5 153175079 153175079 G T GRIA1 Intron 0.30 TCGA-55-8205-01 5 156592640 156592640 C G FAM71B Missense_Mutation p.E180D 0.09 tolerated(1) benign(0.03) TCGA-55-8205-01 5 156786043 156786043 A T CYFIP2 Missense_Mutation p.S876C 0.21 deleterious(0.02) possibly_damaging(0.778) TCGA-55-8205-01 5 15937148 15937148 C A FBXL7 Silent p.G443G 0.22 TCGA-55-8205-01 5 161324163 161324163 C G GABRA1 Missense_Mutation p.A369G 0.13 tolerated(0.22) benign(0.136) TCGA-55-8205-01 5 162900425 162900425 G T HMMR Missense_Mutation p.A256S 0.18 tolerated(0.07) possibly_damaging(0.542) TCGA-55-8205-01 5 167642227 167642227 G A TENM2 Missense_Mutation p.R1343H 0.09 tolerated(0.57) benign(0.014) TCGA-55-8205-01 5 176829621 176829621 A T F12 Missense_Mutation p.V537E 0.10 deleterious(0) probably_damaging(0.965) TCGA-55-8205-01 5 178417681 178417681 G A GRM6 Silent p.S308S 0.27 TCGA-55-8205-01 5 179994113 179994113 G T CNOT6 Missense_Mutation p.S248I 0.15 deleterious(0.05) benign(0.195) TCGA-55-8205-01 5 21975434 21975434 C G CDH12 Missense_Mutation p.A98P 0.17 deleterious(0) probably_damaging(1) TCGA-55-8205-01 5 23509685 23509685 A T PRDM9 Missense_Mutation p.N59I 0.08 deleterious_low_confidence(0.02) benign(0.131) TCGA-55-8205-01 5 32048715 32048715 C T PDZD2 Silent p.I530I 0.15 TCGA-55-8205-01 5 41033257 41033257 C A MROH2B Missense_Mutation p.M749I 0.22 tolerated(0.36) benign(0.005) TCGA-55-8205-01 5 45267222 45267222 C A HCN1 Missense_Mutation p.E584D 0.17 deleterious(0) possibly_damaging(0.86) TCGA-55-8205-01 5 55212826 55212826 A G IL31RA Missense_Mutation p.S725G 0.19 tolerated(0.34) benign(0.009) TCGA-55-8205-01 5 65000188 65000188 C T SGTB Missense_Mutation p.E98K 0.09 tolerated(0.9) benign(0.065) TCGA-55-8205-01 5 7626322 7626322 G T ADCY2 Nonsense_Mutation p.G205* 0.21 TCGA-55-8205-01 5 78919085 78919085 G A PAPD4 Missense_Mutation p.D80N 0.21 tolerated(0.45) benign(0.005) TCGA-55-8205-01 5 79028813 79028813 G A CMYA5 Missense_Mutation p.E1409K 0.19 benign(0.132) TCGA-55-8205-01 5 82849220 82849220 A G VCAN Silent p.Q3177Q 0.09 TCGA-55-8205-01 5 87492306 87492306 C A TMEM161B Splice_Site p.X396_splice 0.16 TCGA-55-8205-01 5 87492307 87492307 T A TMEM161B Splice_Site p.X396_splice 0.17 TCGA-55-8205-01 5 94903690 94903690 G A ARSK Missense_Mutation p.R118K 0.10 tolerated(1) benign(0.001) TCGA-55-8205-01 5 95011240 95011240 G A SPATA9 Missense_Mutation p.S85F 0.14 deleterious(0) probably_damaging(0.998) TCGA-55-8205-01 6 110541042 110541042 C G CDC40 Missense_Mutation p.S437C 0.08 deleterious(0) probably_damaging(0.996) TCGA-55-8205-01 6 116381156 116381156 C T FRK Missense_Mutation p.E107K 0.07 tolerated(0.59) benign(0.005) TCGA-55-8205-01 6 143093591 143093591 C A HIVEP2 Missense_Mutation p.R762L 0.27 tolerated(0.22) benign(0.226) TCGA-55-8205-01 6 152201857 152201857 C A ESR1 Nonsense_Mutation p.C237* 0.30 TCGA-55-8205-01 6 15468844 15468844 G C JARID2 Missense_Mutation p.D189H 0.17 deleterious(0) possibly_damaging(0.868) TCGA-55-8205-01 6 155761101 155761101 G C NOX3 Missense_Mutation p.I219M 0.17 deleterious(0.01) benign(0.03) TCGA-55-8205-01 6 167549989 167549989 G C CCR6 Missense_Mutation p.A91P 0.30 deleterious(0.01) probably_damaging(0.94) TCGA-55-8205-01 6 170064294 170064294 C A WDR27 Missense_Mutation p.R291I 0.32 deleterious(0) probably_damaging(0.911) TCGA-55-8205-01 6 25862525 25862525 G T SLC17A3 Missense_Mutation p.S80Y 0.14 deleterious(0) benign(0.396) TCGA-55-8205-01 6 26123730 26123730 T - HIST1H2BC Intron 0.19 TCGA-55-8205-01 6 30672671 30672671 G C MDC1 Missense_Mutation p.S1430C 0.08 deleterious(0.02) probably_damaging(0.993) TCGA-55-8205-01 6 31797703 31797703 C G HSPA1B 3'UTR 0.08 TCGA-55-8205-01 6 34804068 34804068 C A UHRF1BP1 Missense_Mutation p.L326M 0.06 deleterious(0.02) probably_damaging(0.968) TCGA-55-8205-01 6 36298089 36298089 C T C6orf222 Missense_Mutation p.E127K 0.06 tolerated(0.06) benign(0.001) TCGA-55-8205-01 6 38783430 38783430 G C DNAH8 Missense_Mutation p.E957Q 0.21 benign(0.001) TCGA-55-8205-01 6 38850692 38850692 G A DNAH8 Nonsense_Mutation p.W2405* 0.12 TCGA-55-8205-01 6 41129200 41129200 G A TREM2 Silent p.V64V 0.20 TCGA-55-8205-01 6 44269129 44269129 C G AARS2 Missense_Mutation p.E891Q 0.07 tolerated(0.35) benign(0.035) TCGA-55-8205-01 6 46828610 46828610 G A GPR116 Nonsense_Mutation p.Q741* 0.13 TCGA-55-8205-01 6 47649162 47649162 C G GPR111 Missense_Mutation p.F289L 0.20 tolerated(0.05) probably_damaging(0.993) TCGA-55-8205-01 6 47682020 47682020 G T GPR115 Missense_Mutation p.A347S 0.23 tolerated(0.32) benign(0.203) TCGA-55-8205-01 6 53989568 53989568 G A MLIP Missense_Mutation p.D173N 0.11 tolerated(0.05) possibly_damaging(0.544) TCGA-55-8205-01 6 55406867 55406867 C G HMGCLL1 Missense_Mutation p.Q90H 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-55-8205-01 6 56438527 56438527 G C DST Missense_Mutation p.Q1773E 0.08 benign(0.005) TCGA-55-8205-01 6 56483561 56483561 C A DST Intron 0.19 TCGA-55-8205-01 6 57512530 57512530 G T PRIM2 3'UTR 0.09 TCGA-55-8205-01 6 69348565 69348565 A T BAI3 5'UTR 0.14 TCGA-55-8205-01 6 70034912 70034912 G - BAI3 Frame_Shift_Del 0.11 TCGA-55-8205-01 6 86243325 86243325 C T SNX14 Missense_Mutation p.R601K 0.10 tolerated(0.87) benign(0.02) TCGA-55-8205-01 7 100028994 100028994 C T MEPCE Silent p.G451G 0.12 TCGA-55-8205-01 7 100240816 100240816 G T ACTL6B 3'UTR 0.25 TCGA-55-8205-01 7 103341404 103341404 T C RELN Silent p.L285L 0.26 TCGA-55-8205-01 7 104741956 104741956 G C KMT2E Missense_Mutation p.E603Q 0.08 deleterious(0) benign(0.403) TCGA-55-8205-01 7 106797629 106797629 A T PRKAR2B Splice_Site p.X329_splice 0.34 TCGA-55-8205-01 7 107621257 107621257 C G LAMB1 Splice_Site p.X226_splice 0.14 TCGA-55-8205-01 7 107626474 107626474 C A LAMB1 Missense_Mutation p.R223S 0.09 tolerated(0.12) benign(0.426) TCGA-55-8205-01 7 107818513 107818513 C A NRCAM Missense_Mutation p.D966Y 0.18 deleterious(0) probably_damaging(0.913) TCGA-55-8205-01 7 112724213 112724213 C A GPR85 Missense_Mutation p.M188I 0.26 tolerated(0.15) benign(0.055) TCGA-55-8205-01 7 121682711 121682711 C A PTPRZ1 Missense_Mutation p.Q1951K 0.30 tolerated(0.24) benign(0.013) TCGA-55-8205-01 7 121682712 121682712 A G PTPRZ1 Missense_Mutation p.Q1951R 0.30 deleterious(0.04) benign(0.044) TCGA-55-8205-01 7 122774493 122774493 G T SLC13A1 Silent p.I301I 0.29 TCGA-55-8205-01 7 123388768 123388768 C A WASL Missense_Mutation p.Q7H 0.26 tolerated_low_confidence(0.17) unknown(0) TCGA-55-8205-01 7 131113885 131113885 C G MKLN1 Missense_Mutation p.S314C 0.25 tolerated(0.25) possibly_damaging(0.464) TCGA-55-8205-01 7 131829986 131829986 C - PLXNA4 Frame_Shift_Del p.G1706Afs*40 0.26 TCGA-55-8205-01 7 142880610 142880610 C A TAS2R39 Silent p.L33L 0.12 TCGA-55-8205-01 7 143826671 143826671 C A OR2A14 Missense_Mutation p.L156M 0.23 tolerated(0.07) benign(0.41) TCGA-55-8205-01 7 148921398 148921398 T A ZNF282 Missense_Mutation p.S559T 0.22 tolerated(0.06) benign(0.074) TCGA-55-8205-01 7 149558528 149558528 C T ZNF862 Missense_Mutation p.S760L 0.23 deleterious(0) possibly_damaging(0.743) TCGA-55-8205-01 7 150718344 150718344 G A ATG9B Silent p.R298R 0.11 TCGA-55-8205-01 7 150919703 150919703 C G ABCF2 Splice_Site p.X241_splice 0.08 TCGA-55-8205-01 7 20668396 20668396 T C ABCB5 Missense_Mutation p.M65T 0.30 deleterious(0.01) possibly_damaging(0.877) TCGA-55-8205-01 7 22184817 22184817 G A RAPGEF5 Silent p.F524F 0.14 TCGA-55-8205-01 7 25182360 25182360 G C C7orf31 Missense_Mutation p.S253C 0.15 deleterious(0.05) benign(0.025) TCGA-55-8205-01 7 27148281 27148282 GC - HOXA3 Frame_Shift_Del p.R195Hfs*37 0.24 TCGA-55-8205-01 7 44147449 44147449 A T AEBP1 Missense_Mutation p.S261C 0.10 deleterious_low_confidence(0) possibly_damaging(0.818) TCGA-55-8205-01 7 44147453 44147453 G A AEBP1 Missense_Mutation p.R262K 0.17 tolerated_low_confidence(0.12) benign(0.067) TCGA-55-8205-01 7 44147457 44147457 G A AEBP1 Silent p.R263R 0.17 TCGA-55-8205-01 7 44180915 44180915 G A MYL7 5'UTR 0.13 TCGA-55-8205-01 7 47333403 47333404 CG - TNS3 Frame_Shift_Del p.V1234Pfs*20 0.09 TCGA-55-8205-01 7 48086056 48086056 G T C7orf57 Splice_Site p.X117_splice 0.29 TCGA-55-8205-01 7 64452801 64452801 G C ERV3-1 Missense_Mutation p.L202V 0.06 deleterious(0.04) possibly_damaging(0.78) TCGA-55-8205-01 7 6628287 6628287 G T ZDHHC4 Missense_Mutation p.G261C 0.08 deleterious(0) probably_damaging(1) TCGA-55-8205-01 7 80447662 80447662 C T SEMA3C Missense_Mutation p.A134T 0.13 deleterious(0.01) probably_damaging(1) TCGA-55-8205-01 7 81358947 81358947 G T HGF Missense_Mutation p.D338E 0.22 deleterious(0.05) benign(0.142) TCGA-55-8205-01 7 91632198 91632198 A T AKAP9 Missense_Mutation p.Q989H 0.14 possibly_damaging(0.857) TCGA-55-8205-01 7 92085764 92085764 G T GATAD1 Missense_Mutation p.R233L 0.20 deleterious(0.04) benign(0.012) TCGA-55-8205-01 7 92131279 92131279 C A PEX1 Missense_Mutation p.A781S 0.14 deleterious(0.02) possibly_damaging(0.546) TCGA-55-8205-01 7 98515156 98515156 A G TRRAP Missense_Mutation p.M826V 0.09 possibly_damaging(0.459) TCGA-55-8205-01 7 98586467 98586467 G A TRRAP Missense_Mutation p.D3161N 0.15 probably_damaging(0.989) TCGA-55-8205-01 7 98609706 98609706 C G TRRAP Missense_Mutation p.L3770V 0.06 probably_damaging(0.983) TCGA-55-8205-01 7 99799381 99799381 T A GATS 3'UTR 0.26 TCGA-55-8205-01 7 99957041 99957041 C G PILRB Nonsense_Mutation p.S179* 0.15 TCGA-55-8205-01 8 100523329 100523329 C A VPS13B Intron 0.14 TCGA-55-8205-01 8 100871593 100871593 G T VPS13B Silent p.G3668G 0.09 TCGA-55-8205-01 8 101065067 101065067 C G RGS22 Missense_Mutation p.R551T 0.23 tolerated(0.26) probably_damaging(0.999) TCGA-55-8205-01 8 10285782 10285782 G T MSRA Missense_Mutation p.G223V 0.13 deleterious(0) probably_damaging(0.975) TCGA-55-8205-01 8 113318241 113318241 C A CSMD3 Missense_Mutation p.C2689F 0.12 deleterious(0.02) probably_damaging(0.979) TCGA-55-8205-01 8 124138357 124138357 G C TBC1D31 Missense_Mutation p.M544I 0.10 tolerated(0.09) benign(0.021) TCGA-55-8205-01 8 12595582 12595582 T C LONRF1 Silent p.P345P 0.18 TCGA-55-8205-01 8 139163771 139163771 C A FAM135B Missense_Mutation p.G983C 0.07 deleterious(0) possibly_damaging(0.711) TCGA-55-8205-01 8 22384988 22384988 A T PPP3CC Missense_Mutation p.M343L 0.14 deleterious(0.04) benign(0.017) TCGA-55-8205-01 8 24257809 24257809 C G ADAMDEC1 Missense_Mutation p.L380V 0.18 tolerated(0.16) possibly_damaging(0.6) TCGA-55-8205-01 8 28575267 28575267 A G EXTL3 Missense_Mutation p.D564G 0.10 deleterious(0.04) benign(0.015) TCGA-55-8205-01 8 41556969 41556969 C A ANK1 Splice_Site p.X894_splice 0.28 TCGA-55-8205-01 8 42977912 42977912 C T POMK Silent p.S315S 0.28 TCGA-55-8205-01 8 48790311 48790311 T G PRKDC Missense_Mutation p.Q1778H 0.13 probably_damaging(0.979) TCGA-55-8205-01 8 52366331 52366331 C A PXDNL Missense_Mutation p.V333L 0.07 tolerated(0.14) benign(0.25) TCGA-55-8205-01 8 67809079 67809079 C T MCMDC2 Missense_Mutation p.S504L 0.08 tolerated(0.67) benign(0.11) TCGA-55-8205-01 8 72973953 72973953 G T TRPA1 Missense_Mutation p.A284D 0.11 deleterious(0.05) probably_damaging(1) TCGA-55-8205-01 8 95539200 95539200 T A KIAA1429 Missense_Mutation p.K424N 0.08 tolerated(0.5) benign(0.001) TCGA-55-8205-01 9 101907035 101907035 G C TGFBR1 Missense_Mutation p.R332T 0.17 deleterious(0) probably_damaging(0.998) TCGA-55-8205-01 9 114090556 114090556 G C OR2K2 Nonsense_Mutation p.S53* 0.23 TCGA-55-8205-01 9 119582943 119582943 C A ASTN2 Silent p.L669L 0.24 TCGA-55-8205-01 9 125424013 125424013 A T OR1L1 Missense_Mutation p.T7S 0.34 tolerated(0.98) benign(0.036) TCGA-55-8205-01 9 125673695 125673695 G C ZBTB6 Missense_Mutation p.I219M 0.16 tolerated(0.09) possibly_damaging(0.809) TCGA-55-8205-01 9 125673918 125673918 G A ZBTB6 Missense_Mutation p.S145F 0.17 tolerated(0.12) possibly_damaging(0.855) TCGA-55-8205-01 9 125681461 125681461 G A ZBTB26 Silent p.I251I 0.19 TCGA-55-8205-01 9 131370275 131370275 G C SPTAN1 Missense_Mutation p.E1431Q 0.16 deleterious(0) probably_damaging(0.964) TCGA-55-8205-01 9 131469282 131469282 G C PKN3 Missense_Mutation p.D211H 0.08 deleterious(0) probably_damaging(0.988) TCGA-55-8205-01 9 131476880 131476880 G A PKN3 Missense_Mutation p.M507I 0.10 tolerated(0.51) benign(0) TCGA-55-8205-01 9 139814713 139814713 G A TRAF2 Missense_Mutation p.E236K 0.21 deleterious(0.05) possibly_damaging(0.709) TCGA-55-8205-01 9 139887562 139887562 G A C9orf142 Silent p.L96L 0.24 TCGA-55-8205-01 9 140938298 140938298 G T CACNA1B Missense_Mutation p.G1120V 0.25 deleterious(0) probably_damaging(0.987) TCGA-55-8205-01 9 141014743 141014743 C T CACNA1B Missense_Mutation p.H2053Y 0.25 tolerated(0.13) probably_damaging(0.942) TCGA-55-8205-01 9 17273806 17273806 C A CNTLN Missense_Mutation p.Q309K 0.24 tolerated(0.08) benign(0.346) TCGA-55-8205-01 9 19786115 19786115 G T SLC24A2 Silent p.I250I 0.22 TCGA-55-8205-01 9 21971056 21971056 C A CDKN2A Missense_Mutation p.G101V 0.33 deleterious(0) probably_damaging(0.992) TCGA-55-8205-01 9 32784571 32784571 C G TMEM215 Silent p.S130S 0.27 TCGA-55-8205-01 9 73254084 73254084 C A TRPM3 Missense_Mutation p.L491F 0.41 deleterious(0.02) probably_damaging(0.999) TCGA-55-8205-01 9 88960655 88960655 C A ZCCHC6 Missense_Mutation p.D250Y 0.11 deleterious(0.01) probably_damaging(0.945) TCGA-55-8205-01 9 98209480 98209480 G A PTCH1 Missense_Mutation p.A1353V 0.11 tolerated_low_confidence(0.14) benign(0.001) TCGA-55-8205-01 X 102632636 102632636 G C NGFRAP1 Missense_Mutation p.E73Q 0.17 tolerated(0.96) benign(0.199) TCGA-55-8205-01 X 106331704 106331704 G A RBM41 Missense_Mutation p.P297S 0.09 deleterious(0.02) benign(0.215) TCGA-55-8205-01 X 107869484 107869484 G - COL4A5 Frame_Shift_Del p.G1051Dfs*101 0.27 TCGA-55-8205-01 X 109695611 109695611 C T RGAG1 Missense_Mutation p.S589F 0.08 deleterious(0) probably_damaging(0.971) TCGA-55-8205-01 X 109698493 109698493 C T RGAG1 Missense_Mutation p.H1371Y 0.11 deleterious_low_confidence(0.04) probably_damaging(0.92) TCGA-55-8205-01 X 120007725 120007725 T A CT47B1 3'UTR 0.13 TCGA-55-8205-01 X 130219638 130219638 G T ARHGAP36 Silent p.L344L 0.10 TCGA-55-8205-01 X 130219639 130219639 G T ARHGAP36 Nonsense_Mutation p.E345* 0.10 TCGA-55-8205-01 X 130419878 130419878 C A IGSF1 Missense_Mutation p.R81L 0.07 tolerated(0.07) benign(0.106) TCGA-55-8205-01 X 135585006 135585006 G T HTATSF1 Nonsense_Mutation p.E214* 0.10 TCGA-55-8205-01 X 138708373 138708387 CTTCCATAGTTGCAG - MCF2 In_Frame_Del p.L278_K282del 0.11 TCGA-55-8205-01 X 138880904 138880904 T A ATP11C Splice_Site p.X240_splice 0.14 TCGA-55-8205-01 X 142718705 142718705 G C SLITRK4 Missense_Mutation p.L74V 0.14 tolerated(0.06) probably_damaging(0.967) TCGA-55-8205-01 X 14599505 14599505 T C GLRA2 Silent p.N157N 0.23 TCGA-55-8205-01 X 14934424 14934424 C A MOSPD2 Missense_Mutation p.P431H 0.23 tolerated(0.09) benign(0.3) TCGA-55-8205-01 X 150839611 150839611 G A PASD1 Silent p.L391L 0.21 TCGA-55-8205-01 X 154158125 154158125 T C F8 Missense_Mutation p.T1314A 0.19 tolerated(0.19) benign(0.004) TCGA-55-8205-01 X 15580054 15580054 T G ACE2 Missense_Mutation p.T798P 0.20 tolerated_low_confidence(0.14) benign(0.053) TCGA-55-8205-01 X 18671675 18671675 C G CDKL5 3'UTR 0.30 TCGA-55-8205-01 X 19983547 19983547 C A CXorf23 Missense_Mutation p.D297Y 0.06 deleterious(0) probably_damaging(0.979) TCGA-55-8205-01 X 2139106 2139106 A T DHRSX Silent p.T323T 0.11 TCGA-55-8205-01 X 21675066 21675066 G - KLHL34 Frame_Shift_Del p.R281Afs*14 0.25 TCGA-55-8205-01 X 21875589 21875589 C G YY2 Silent p.R329R 0.22 TCGA-55-8205-01 X 27998992 27998992 G T DCAF8L1 Missense_Mutation p.R154S 0.17 tolerated(0.1) benign(0.199) TCGA-55-8205-01 X 30864760 30864760 G T TAB3 Missense_Mutation p.P571H 0.16 deleterious(0.02) probably_damaging(0.959) TCGA-55-8205-01 X 3228470 3228470 G T MXRA5 Missense_Mutation p.R2592S 0.14 deleterious(0) probably_damaging(0.998) TCGA-55-8205-01 X 32662398 32662398 G T DMD Silent p.G394G 0.22 TCGA-55-8205-01 X 47003895 47003895 C T NDUFB11 Missense_Mutation p.E62K 0.18 tolerated(0.22) benign(0.259) TCGA-55-8205-01 X 47028813 47028813 G - RBM10 Frame_Shift_Del p.D40Tfs*94 0.25 TCGA-55-8205-01 X 48775900 48775900 G A PIM2 Silent p.F28F 0.12 TCGA-55-8205-01 X 51150645 51150645 C G CXorf67 Missense_Mutation p.S259R 0.37 tolerated(0.74) benign(0.002) TCGA-55-8205-01 X 54177806 54177806 C A FAM120C Missense_Mutation p.V344F 0.10 deleterious(0) possibly_damaging(0.826) TCGA-55-8205-01 X 54784519 54784519 G T ITIH6 Missense_Mutation p.P663H 0.20 deleterious(0.03) benign(0.436) TCGA-55-8205-01 X 55246978 55246978 G T PAGE5 5'UTR 0.25 TCGA-55-8205-01 X 63413183 63413183 G T AMER1 5'UTR 0.08 TCGA-55-8205-01 X 68749734 68749734 G T FAM155B Missense_Mutation p.G452C 0.28 deleterious(0.01) possibly_damaging(0.534) TCGA-55-8205-01 X 70343054 70343054 G C MED12 Missense_Mutation p.R532T 0.09 probably_damaging(1) TCGA-55-8205-01 X 70343074 70343074 G A MED12 Missense_Mutation p.E539K 0.11 probably_damaging(0.949) TCGA-55-8205-01 X 7252129 7252130 GC - STS Frame_Shift_Del p.R454Lfs*50 0.23 TCGA-55-8205-01 X 78618448 78618448 G T ITM2A Missense_Mutation p.D144E 0.14 deleterious(0) probably_damaging(0.936) TCGA-55-8206-01 10 100185475 100185475 G C HPS1 Missense_Mutation p.S386R 0.26 tolerated(0.35) possibly_damaging(0.717) TCGA-55-8206-01 10 61829658 61829658 G A ANK3 Nonsense_Mutation p.Q3661* 0.26 TCGA-55-8206-01 11 47808039 47808039 G A NUP160 Nonsense_Mutation p.Q1272* 0.14 TCGA-55-8206-01 12 52790776 52790776 A G KRT82 Missense_Mutation p.V320A 0.18 tolerated(1) benign(0.052) TCGA-55-8206-01 14 70252932 70252932 A T SLC10A1 Missense_Mutation p.L150Q 0.04 deleterious(0) possibly_damaging(0.756) TCGA-55-8206-01 15 45951299 45951299 G T SQRDL Missense_Mutation p.A60S 0.15 tolerated(0.21) benign(0.029) TCGA-55-8206-01 15 84558925 84558925 T C ADAMTSL3 Silent p.Y379Y 0.19 TCGA-55-8206-01 16 21693116 21693116 G T OTOA Silent p.R79R 0.11 TCGA-55-8206-01 16 31273061 31273061 C T ITGAM Missense_Mutation p.T26I 0.10 tolerated(1) benign(0.004) TCGA-55-8206-01 16 71319086 71319086 T A CMTR2 Missense_Mutation p.E246D 0.20 deleterious(0.01) probably_damaging(0.98) TCGA-55-8206-01 17 38859674 38859674 G T KRT24 Missense_Mutation p.S91Y 0.16 tolerated(0.23) unknown(0) TCGA-55-8206-01 19 11024705 11024705 C T CARM1 Silent p.H274H 0.26 TCGA-55-8206-01 19 12989280 12989280 C T DNASE2 Missense_Mutation p.E209K 0.20 tolerated(0.68) benign(0.013) TCGA-55-8206-01 19 33639806 33639806 C T WDR88 Silent p.S223S 0.18 TCGA-55-8206-01 1 161654815 161654815 C T RPL31P11 RNA 0.18 TCGA-55-8206-01 1 167973797 167973797 A G DCAF6 Missense_Mutation p.T382A 0.22 tolerated(0.81) benign(0) TCGA-55-8206-01 1 179887122 179887122 C T TOR1AIP1 Silent p.N500N 0.16 TCGA-55-8206-01 1 186273248 186273248 C G PRG4 Missense_Mutation p.P110A 0.17 probably_damaging(0.942) TCGA-55-8206-01 1 214638002 214638002 C T PTPN14 Missense_Mutation p.A49T 0.13 tolerated(0.11) probably_damaging(1) TCGA-55-8206-01 1 26881201 26881201 C T RPS6KA1 Missense_Mutation p.A252V 0.13 tolerated(0.46) benign(0.337) TCGA-55-8206-01 1 27942236 27942236 G A FGR Missense_Mutation p.R268W 0.19 deleterious(0) probably_damaging(0.958) TCGA-55-8206-01 20 55099809 55099809 G T FAM209A 5'UTR 0.15 TCGA-55-8206-01 20 61870753 61870753 T C BIRC7 Silent p.L231L 0.03 TCGA-55-8206-01 20 61870849 61870849 C G BIRC7 Silent p.V263V 0.04 TCGA-55-8206-01 20 61870856 61870856 C T BIRC7 Missense_Mutation p.P266S 0.04 deleterious(0) probably_damaging(1) TCGA-55-8206-01 21 32524972 32524972 C A TIAM1 Missense_Mutation p.E1116D 0.17 deleterious(0.01) possibly_damaging(0.535) TCGA-55-8206-01 21 34072224 34072260 ATGCAGACCATGCAAAATAAAAGTTTCCTGAATTCAA - SYNJ1 Frame_Shift_Del p.N163Afs*4 0.19 TCGA-55-8206-01 21 37603391 37603391 A - DOPEY2 Frame_Shift_Del p.E771Rfs*24 0.16 TCGA-55-8206-01 21 47679136 47679136 G A MCM3AP Intron 0.27 TCGA-55-8206-01 2 170063462 170063462 A C LRP2 Missense_Mutation p.D2256E 0.17 probably_damaging(0.999) TCGA-55-8206-01 2 172411171 172411171 C T CYBRD1 Missense_Mutation p.S232F 0.47 tolerated(0.08) benign(0.316) TCGA-55-8206-01 2 172563762 172563762 A G DYNC1I2 Intron 0.19 TCGA-55-8206-01 2 179526535 179526535 C T TTN Silent p.K12412K 0.14 TCGA-55-8206-01 4 152609913 152609913 G T PET112 Missense_Mutation p.N400K 0.15 deleterious(0) probably_damaging(0.91) TCGA-55-8206-01 4 20543236 20543236 G A SLIT2 Missense_Mutation p.D713N 0.19 tolerated(0.15) benign(0.184) TCGA-55-8206-01 5 175782625 175782625 G A KIAA1191 Silent p.S52S 0.16 TCGA-55-8206-01 6 82461326 82461326 A T FAM46A Missense_Mutation p.I178N 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-55-8206-01 7 55242466 55242480 GAATTAAGAGAAGCA - EGFR In_Frame_Del p.E746_A750del 0.22 TCGA-55-8206-01 7 81978960 81978960 T G CACNA2D1 Missense_Mutation p.K34T 0.18 deleterious(0.04) probably_damaging(0.977) TCGA-55-8206-01 8 105025696 105025696 C A RIMS2 Missense_Mutation p.P1024Q 0.11 tolerated_low_confidence(0.45) possibly_damaging(0.606) TCGA-55-8206-01 X 151909235 151909235 G C CSAG1 3'UTR 0.11 TCGA-55-8207-01 10 105048127 105048127 G C INA Missense_Mutation p.E401Q 0.28 deleterious(0) probably_damaging(1) TCGA-55-8207-01 10 105801268 105801268 G C COL17A1 Silent p.G860G 0.25 TCGA-55-8207-01 10 115963326 115963326 G A TDRD1 Silent p.Q327Q 0.27 TCGA-55-8207-01 10 119805412 119805412 T A RAB11FIP2 Missense_Mutation p.H88L 0.25 deleterious(0) probably_damaging(0.996) TCGA-55-8207-01 10 123246924 123246924 G A FGFR2 Silent p.V668V 0.22 TCGA-55-8207-01 10 123997013 123997013 A T TACC2 Missense_Mutation p.Q2744L 0.19 possibly_damaging(0.525) TCGA-55-8207-01 10 129907666 129907666 G T MKI67 Missense_Mutation p.A813E 0.23 deleterious(0.02) benign(0.081) TCGA-55-8207-01 10 134916248 134916248 A T GPR123 Silent p.I101I 0.24 TCGA-55-8207-01 10 15634292 15634292 G T ITGA8 Silent p.G741G 0.16 TCGA-55-8207-01 10 16930420 16930420 T A CUBN Missense_Mutation p.L2967F 0.35 deleterious(0.03) probably_damaging(0.937) TCGA-55-8207-01 10 23409836 23409836 C T MSRB2 3'UTR 0.53 TCGA-55-8207-01 10 26589876 26589876 G - GAD2 Frame_Shift_Del p.G582Dfs*16 0.21 TCGA-55-8207-01 10 38242683 38242683 T C ZNF25 Missense_Mutation p.D81G 0.49 tolerated(0.37) benign(0.001) TCGA-55-8207-01 10 60580187 60580187 C G BICC1 Missense_Mutation p.T918S 0.05 tolerated(0.46) benign(0.015) TCGA-55-8207-01 10 72326469 72326469 G T PALD1 Missense_Mutation p.A851S 0.18 tolerated_low_confidence(0.15) benign(0.009) TCGA-55-8207-01 10 87362377 87362377 G T GRID1 Missense_Mutation p.P895T 0.16 tolerated_low_confidence(0.38) benign(0.001) TCGA-55-8207-01 10 87406840 87406840 G A GRID1 Intron 0.21 TCGA-55-8207-01 10 90427050 90427050 C - LIPF Frame_Shift_Del p.M11Cfs*5 0.24 TCGA-55-8207-01 10 95155909 95155909 C A MYOF Silent p.G469G 0.21 TCGA-55-8207-01 11 129739400 129739400 T G NFRKB Missense_Mutation p.T1199P 0.15 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-55-8207-01 11 17793580 17793580 C A KCNC1 Silent p.V313V 0.39 TCGA-55-8207-01 11 26463611 26463611 C T ANO3 Nonsense_Mutation p.Q65* 0.22 TCGA-55-8207-01 11 36459026 36459026 G C PRR5L Missense_Mutation p.Q148H 0.28 deleterious(0) probably_damaging(0.909) TCGA-55-8207-01 11 36614998 36614998 G T RAG2 Missense_Mutation p.P241T 0.20 deleterious(0.05) probably_damaging(1) TCGA-55-8207-01 11 47355473 47355473 C G MYBPC3 Missense_Mutation p.Q998H 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-55-8207-01 11 47736210 47736210 C T AGBL2 5'UTR 0.30 TCGA-55-8207-01 11 48266801 48266801 C T OR4X2 Missense_Mutation p.S49F 0.22 deleterious(0.01) benign(0.078) TCGA-55-8207-01 11 4870065 4870065 G C OR51S1 Missense_Mutation p.A125G 0.20 deleterious(0) possibly_damaging(0.827) TCGA-55-8207-01 11 55322040 55322040 C A OR4C15 Silent p.V86V 0.44 TCGA-55-8207-01 11 55371074 55371074 G T OR4C11 Missense_Mutation p.P259H 0.25 deleterious(0) probably_damaging(1) TCGA-55-8207-01 11 56468283 56468283 T C OR9G1 Silent p.C140C 0.20 TCGA-55-8207-01 11 58392002 58392002 G T CNTF 3'UTR 0.39 TCGA-55-8207-01 11 59282573 59282574 - C OR4D9 Frame_Shift_Ins p.R64Pfs*7 0.33 TCGA-55-8207-01 11 59405814 59405814 C A PATL1 3'UTR 0.28 TCGA-55-8207-01 11 60696293 60696293 G T TMEM132A Missense_Mutation p.D243Y 0.23 deleterious(0) benign(0.163) TCGA-55-8207-01 11 61039228 61039228 G A VWCE Silent p.C568C 0.20 TCGA-55-8207-01 11 62559426 62559426 G A TMEM223 Missense_Mutation p.A14V 0.31 tolerated_low_confidence(0.52) benign(0.003) TCGA-55-8207-01 11 66619932 66619932 G C PC Silent p.L601L 0.06 TCGA-55-8207-01 11 74680729 74680729 C T SPCS2 Missense_Mutation p.S160F 0.37 deleterious(0) probably_damaging(0.956) TCGA-55-8207-01 11 75115247 75115247 A G RPS3 Silent p.R194R 0.57 TCGA-55-8207-01 11 82644264 82644264 C T C11orf82 Silent p.C628C 0.20 TCGA-55-8207-01 11 85445059 85445059 G A SYTL2 Missense_Mutation p.S437L 0.22 tolerated(0.18) benign(0.003) TCGA-55-8207-01 11 86086261 86086261 C T CCDC81 Missense_Mutation p.T19I 0.22 deleterious(0) probably_damaging(0.927) TCGA-55-8207-01 11 93118567 93118567 A G CCDC67 Missense_Mutation p.M265V 0.39 tolerated(0.07) benign(0.138) TCGA-55-8207-01 12 108686396 108686396 C A CMKLR1 Missense_Mutation p.S115I 0.63 deleterious(0.02) benign(0.099) TCGA-55-8207-01 12 111785834 111785834 G A CUX2 Missense_Mutation p.C1389Y 0.22 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-55-8207-01 12 121131925 121131925 G A MLEC Silent p.L89L 0.17 TCGA-55-8207-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.59 deleterious(0.04) probably_damaging(0.993) TCGA-55-8207-01 12 29649122 29649122 G C OVCH1 Missense_Mutation p.S91R 0.73 tolerated(0.36) benign(0.141) TCGA-55-8207-01 12 32137352 32137352 G T KIAA1551 Nonsense_Mutation p.G1155* 0.56 TCGA-55-8207-01 12 41966197 41966197 C A PDZRN4 Missense_Mutation p.T539K 0.41 tolerated(0.07) probably_damaging(0.997) TCGA-55-8207-01 12 54115252 54115252 T A CALCOCO1 Missense_Mutation p.R253W 0.57 deleterious(0) probably_damaging(0.997) TCGA-55-8207-01 12 85255505 85255505 C G SLC6A15 Missense_Mutation p.G700A 0.67 tolerated_low_confidence(0.17) probably_damaging(0.999) TCGA-55-8207-01 13 106119382 106119382 A T DAOA Intron 0.50 TCGA-55-8207-01 13 26144947 26144947 G A ATP8A2 Missense_Mutation p.V506M 0.56 deleterious(0.04) possibly_damaging(0.493) TCGA-55-8207-01 13 36743141 36743141 G T SOHLH2 3'UTR 0.49 TCGA-55-8207-01 13 95725508 95725508 T A ABCC4 Missense_Mutation p.M990L 0.52 tolerated(0.08) benign(0.141) TCGA-55-8207-01 14 22476385 22476385 G C TRAV19 Silent p.V105V 0.32 TCGA-55-8207-01 14 22476386 22476386 G T TRAV19 Missense_Mutation p.D106Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-55-8207-01 14 24034374 24034374 C T AP1G2 Missense_Mutation p.R259Q 0.26 tolerated(0.07) benign(0.034) TCGA-55-8207-01 14 28733939 28733939 G A BNIP3P1 RNA 0.23 TCGA-55-8207-01 14 47389216 47389216 T A MDGA2 Missense_Mutation p.Q746L 0.35 deleterious(0.04) benign(0.276) TCGA-55-8207-01 14 47600917 47600917 C G MDGA2 Missense_Mutation p.A309P 0.40 deleterious(0) probably_damaging(0.978) TCGA-55-8207-01 14 51243735 51243735 C A NIN Missense_Mutation p.G200C 0.42 deleterious(0) probably_damaging(0.998) TCGA-55-8207-01 14 53100621 53100621 A G GPR137C Missense_Mutation p.S357G 0.44 deleterious(0.01) probably_damaging(0.916) TCGA-55-8207-01 14 64727365 64727365 C T ESR2 Missense_Mutation p.A252T 0.20 tolerated(0.52) benign(0.001) TCGA-55-8207-01 14 79181203 79181203 C A NRXN3 Missense_Mutation p.R216S 0.38 tolerated(0.24) probably_damaging(0.976) TCGA-55-8207-01 14 81943307 81943307 C A SEL1L 3'UTR 0.50 TCGA-55-8207-01 14 93685632 93685632 G C UBR7 Missense_Mutation p.Q295H 0.33 tolerated(0.15) benign(0.001) TCGA-55-8207-01 14 94004462 94004462 G T UNC79 Missense_Mutation p.G240V 0.37 deleterious(0) probably_damaging(0.992) TCGA-55-8207-01 14 99724031 99724031 C A BCL11B Silent p.G68G 0.42 TCGA-55-8207-01 15 24921886 24921886 G T NPAP1 Missense_Mutation p.G291V 0.60 deleterious(0.01) probably_damaging(0.948) TCGA-55-8207-01 15 34151796 34151796 C A RYR3 Nonsense_Mutation p.Y4721* 0.56 TCGA-55-8207-01 15 35084464 35084464 C G ACTC1 Missense_Mutation p.R212P 0.53 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-8207-01 15 59499268 59499268 C A LDHAL6B Silent p.L43L 0.67 TCGA-55-8207-01 15 75975044 75975044 C T CSPG4 Missense_Mutation p.G1563S 0.39 deleterious(0.01) probably_damaging(0.971) TCGA-55-8207-01 15 75981600 75981600 G T CSPG4 Silent p.P602P 0.29 TCGA-55-8207-01 15 78894314 78894314 A T CHRNA3 Missense_Mutation p.C224S 0.21 deleterious(0.03) probably_damaging(0.998) TCGA-55-8207-01 15 89169422 89169422 A T AEN 5'UTR 0.28 TCGA-55-8207-01 15 90771187 90771187 T C SEMA4B Missense_Mutation p.L609S 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-55-8207-01 15 97327478 97327478 C A SPATA8 Missense_Mutation p.P62H 0.42 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-55-8207-01 16 20871675 20871675 C A DCUN1D3 Missense_Mutation p.G150C 0.07 deleterious(0) probably_damaging(1) TCGA-55-8207-01 16 22152971 22152971 A T VWA3A Missense_Mutation p.T818S 0.80 tolerated(0.4) benign(0.071) TCGA-55-8207-01 16 2354054 2354054 C T ABCA3 Silent p.V461V 0.09 TCGA-55-8207-01 16 24135178 24135178 C - PRKCB Frame_Shift_Del p.K315Rfs*23 0.20 TCGA-55-8207-01 16 24183630 24183630 G C PRKCB Missense_Mutation p.D427H 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-8207-01 16 2505547 2505547 G C CCNF Missense_Mutation p.G623R 0.09 deleterious(0) possibly_damaging(0.883) TCGA-55-8207-01 16 28841268 28841268 A T ATXN2L Missense_Mutation p.Q308L 0.36 deleterious(0.01) probably_damaging(0.993) TCGA-55-8207-01 16 32893929 32893929 G T RP11-989E6.3 5'Flank 0.18 TCGA-55-8207-01 16 3493140 3493140 G T ZNF597 Missense_Mutation p.P5H 0.27 tolerated_low_confidence(0.13) benign(0.001) TCGA-55-8207-01 16 46960903 46960903 G A GPT2 Missense_Mutation p.V479M 0.05 deleterious(0) probably_damaging(0.995) TCGA-55-8207-01 16 48596175 48596176 - A N4BP1 Frame_Shift_Ins p.V127Cfs*5 0.24 TCGA-55-8207-01 16 56995954 56995954 C A CETP Silent p.G21G 0.42 TCGA-55-8207-01 16 57081479 57081479 C T NLRC5 Missense_Mutation p.P1121S 0.29 deleterious(0.03) possibly_damaging(0.801) TCGA-55-8207-01 16 58077169 58077169 G A MMP15 Silent p.P453P 0.14 TCGA-55-8207-01 16 76461484 76461484 G A CNTNAP4 Missense_Mutation p.G151R 0.60 deleterious(0) probably_damaging(0.974) TCGA-55-8207-01 17 20768677 20768677 C T CCDC144NL 3'UTR 0.32 TCGA-55-8207-01 17 20768678 20768678 A T CCDC144NL 3'UTR 0.30 TCGA-55-8207-01 17 21476976 21476976 G T AC138710.1 5'Flank 0.27 TCGA-55-8207-01 17 25937035 25937035 G T KSR1 Intron 0.37 TCGA-55-8207-01 17 27002105 27002105 G A SUPT6H Missense_Mutation p.G155R 0.22 tolerated(0.29) unknown(0) TCGA-55-8207-01 17 38349644 38349644 C A RAPGEFL1 Silent p.I407I 0.37 TCGA-55-8207-01 17 39240853 39240853 C A KRTAP4-7 Missense_Mutation p.T132N 0.17 deleterious(0.01) unknown(0) TCGA-55-8207-01 17 39578657 39578657 C A KRT37 Silent p.G254G 0.29 TCGA-55-8207-01 17 40716755 40716755 A G COASY Missense_Mutation p.Y388C 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-8207-01 17 40836126 40836126 G A CNTNAP1 Missense_Mutation p.R81Q 0.18 tolerated(0.84) benign(0.421) TCGA-55-8207-01 17 41847180 41847180 G - DUSP3 Frame_Shift_Del p.R119Gfs*16 0.09 TCGA-55-8207-01 17 48194999 48194999 C A SAMD14 Missense_Mutation p.G91W 0.31 deleterious(0.02) possibly_damaging(0.893) TCGA-55-8207-01 17 56342295 56342295 C T LPO Silent p.L493L 0.35 TCGA-55-8207-01 17 59668348 59668348 C A NACA2 Missense_Mutation p.G65V 0.34 deleterious(0.01) benign(0.002) TCGA-55-8207-01 17 7400798 7400798 G T POLR2A Missense_Mutation p.A315S 0.38 possibly_damaging(0.718) TCGA-55-8207-01 17 8046768 8046768 G T PER1 Missense_Mutation p.P963Q 0.39 tolerated(0.35) possibly_damaging(0.458) TCGA-55-8207-01 18 21120446 21120446 T A NPC1 Missense_Mutation p.D857V 0.61 deleterious(0) benign(0.12) TCGA-55-8207-01 18 22807254 22807254 C A ZNF521 Missense_Mutation p.G210W 0.41 deleterious(0) probably_damaging(1) TCGA-55-8207-01 18 2666232 2666233 - T SMCHD1 Splice_Site p.X88_splice 0.40 TCGA-55-8207-01 18 28671061 28671061 C A DSC2 Missense_Mutation p.R135I 0.40 deleterious(0) probably_damaging(0.999) TCGA-55-8207-01 18 28986106 28986106 T A DSG4 Missense_Mutation p.V568E 0.45 deleterious(0) probably_damaging(0.992) TCGA-55-8207-01 18 43223096 43223096 G T SLC14A2 Splice_Site p.X376_splice 0.58 TCGA-55-8207-01 18 67614144 67614144 C A CD226 Missense_Mutation p.V70F 0.24 tolerated(0.7) benign(0.308) TCGA-55-8207-01 18 70209181 70209181 G T CBLN2 Missense_Mutation p.P72Q 0.67 deleterious(0) benign(0.363) TCGA-55-8207-01 18 77455229 77455229 G T CTDP1 Missense_Mutation p.V107F 0.49 deleterious(0.01) possibly_damaging(0.707) TCGA-55-8207-01 19 10089594 10089594 G T COL5A3 Silent p.P979P 0.41 TCGA-55-8207-01 19 10099827 10099827 C A COL5A3 Silent p.P706P 0.40 TCGA-55-8207-01 19 13423559 13423559 G T CACNA1A Missense_Mutation p.S531Y 0.37 probably_damaging(0.919) TCGA-55-8207-01 19 13428054 13428054 C T CACNA1A Missense_Mutation p.R476H 0.25 probably_damaging(0.923) TCGA-55-8207-01 19 18305841 18305841 A T MPV17L2 Missense_Mutation p.Y170F 0.43 deleterious(0) probably_damaging(0.914) TCGA-55-8207-01 19 19766235 19766235 T A ATP13A1 Missense_Mutation p.Y475F 0.35 tolerated(0.05) probably_damaging(0.914) TCGA-55-8207-01 19 22272138 22272138 A G ZNF257 Missense_Mutation p.Y529C 0.23 tolerated(0.14) benign(0.095) TCGA-55-8207-01 19 31770444 31770444 C A TSHZ3 Missense_Mutation p.M85I 0.41 tolerated(0.11) benign(0.042) TCGA-55-8207-01 19 35941156 35941156 G T FFAR2 Silent p.R180R 0.42 TCGA-55-8207-01 19 36322237 36322237 C A NPHS1 Missense_Mutation p.E1116D 0.48 tolerated(0.26) benign(0.001) TCGA-55-8207-01 19 37117290 37117290 G T ZNF382 Missense_Mutation p.S164I 0.40 tolerated(0.35) benign(0.232) TCGA-55-8207-01 19 37853986 37853986 G A HKR1 Missense_Mutation p.R430K 0.08 tolerated(0.64) benign(0.056) TCGA-55-8207-01 19 42569487 42569487 C A GRIK5 Missense_Mutation p.L44F 0.15 tolerated(1) probably_damaging(0.982) TCGA-55-8207-01 19 4550272 4550272 G T SEMA6B Nonsense_Mutation p.C378* 0.23 TCGA-55-8207-01 19 48547223 48547223 C A CABP5 5'UTR 0.30 TCGA-55-8207-01 19 48836552 48836552 C T TMEM143 Missense_Mutation p.G435D 0.22 tolerated_low_confidence(0.06) probably_damaging(0.992) TCGA-55-8207-01 19 48918135 48918135 C - GRIN2D Frame_Shift_Del p.R478Afs*15 0.26 TCGA-55-8207-01 19 50364720 50364720 G C PNKP Silent p.V478V 0.24 TCGA-55-8207-01 19 51501061 51501061 C A KLK8 Missense_Mutation p.Q236H 0.19 tolerated(0.28) possibly_damaging(0.517) TCGA-55-8207-01 19 54745616 54745616 C A LILRA6 Missense_Mutation p.R165L 0.17 tolerated(0.15) benign(0.008) TCGA-55-8207-01 19 55143550 55143550 C A LILRB1 Missense_Mutation p.R175S 0.18 tolerated(1) benign(0.002) TCGA-55-8207-01 19 57175831 57175831 C T ZNF835 Missense_Mutation p.G246S 0.16 deleterious(0.02) probably_damaging(0.995) TCGA-55-8207-01 19 57326479 57326479 C A PEG3 Missense_Mutation p.D1111Y 0.52 deleterious(0) probably_damaging(0.992) TCGA-55-8207-01 19 57743543 57743543 G T AURKC Nonsense_Mutation p.G83* 0.21 TCGA-55-8207-01 19 9021061 9021061 T A MUC16 Missense_Mutation p.Q12421L 0.48 benign(0.19) TCGA-55-8207-01 19 9061110 9061110 G A MUC16 Missense_Mutation p.T8779M 0.05 unknown(0) TCGA-55-8207-01 19 9361818 9361818 G T OR7E24 Silent p.L33L 0.40 TCGA-55-8207-01 1 103491809 103491809 C A COL11A1 Missense_Mutation p.G287V 0.49 benign(0.204) TCGA-55-8207-01 1 104112465 104112465 T C AMY2B Intron 0.47 TCGA-55-8207-01 1 108247681 108247681 G T VAV3 Missense_Mutation p.S502Y 0.36 deleterious(0) probably_damaging(1) TCGA-55-8207-01 1 11253738 11253738 G A ANGPTL7 Silent p.Q193Q 0.35 TCGA-55-8207-01 1 114646279 114646279 G T SYT6 Missense_Mutation p.T294N 0.43 deleterious(0) probably_damaging(0.981) TCGA-55-8207-01 1 11576056 11576056 A T PTCHD2 Splice_Site p.X530_splice 0.46 TCGA-55-8207-01 1 1168029 1168029 C G B3GALT6 Missense_Mutation p.A124G 0.29 tolerated(0.37) benign(0.01) TCGA-55-8207-01 1 117156400 117156400 G A IGSF3 Silent p.N273N 0.23 TCGA-55-8207-01 1 149871659 149871659 G A BOLA1 Missense_Mutation p.R16H 0.52 tolerated_low_confidence(0.23) benign(0.412) TCGA-55-8207-01 1 152191375 152191375 C T HRNR Silent p.G910G 0.28 TCGA-55-8207-01 1 152785059 152785059 T A LCE1B Missense_Mutation p.V46D 0.27 tolerated_low_confidence(0.1) unknown(0) TCGA-55-8207-01 1 153410795 153410795 G T S100A7L2 Missense_Mutation p.P15H 0.26 deleterious(0.02) possibly_damaging(0.476) TCGA-55-8207-01 1 153580051 153580051 C A S100A16 Missense_Mutation p.A91S 0.54 tolerated(0.21) benign(0.022) TCGA-55-8207-01 1 155173313 155173313 A T THBS3 Missense_Mutation p.S222T 0.19 tolerated(0.33) benign(0.155) TCGA-55-8207-01 1 15793991 15793991 C A CELA2A Silent p.S250S 0.39 TCGA-55-8207-01 1 165173266 165173266 G T LMX1A Missense_Mutation p.L334I 0.22 tolerated(0.79) benign(0.009) TCGA-55-8207-01 1 17395648 17395648 G T PADI2 Missense_Mutation p.T630N 0.42 deleterious(0.02) possibly_damaging(0.833) TCGA-55-8207-01 1 179966310 179966310 G A CEP350 Missense_Mutation p.G340S 0.12 probably_damaging(1) TCGA-55-8207-01 1 181745315 181745315 C G CACNA1E Missense_Mutation p.H1740D 0.13 deleterious(0) benign(0.227) TCGA-55-8207-01 1 186276227 186276227 C A PRG4 Missense_Mutation p.P459H 0.13 unknown(0) TCGA-55-8207-01 1 19167000 19167000 C T TAS1R2 Missense_Mutation p.C538Y 0.23 deleterious(0) probably_damaging(1) TCGA-55-8207-01 1 197404541 197404542 - A CRB1 Frame_Shift_Ins p.N1184Kfs*10 0.39 TCGA-55-8207-01 1 200882703 200882703 G T C1orf106 Silent p.G561G 0.17 TCGA-55-8207-01 1 201823951 201823951 G C IPO9 Missense_Mutation p.A271P 0.12 deleterious(0) possibly_damaging(0.795) TCGA-55-8207-01 1 201841972 201841972 A T IPO9 Nonsense_Mutation p.K865* 0.25 TCGA-55-8207-01 1 207200869 207200869 C A C1orf116 Missense_Mutation p.M25I 0.15 tolerated(0.06) benign(0.059) TCGA-55-8207-01 1 207658874 207658874 T A CR2 Missense_Mutation p.V1085D 0.45 deleterious_low_confidence(0) benign(0.134) TCGA-55-8207-01 1 207658875 207658875 T A CR2 Silent p.V1085V 0.46 TCGA-55-8207-01 1 214706355 214706355 C A PTPN14 Intron 0.21 TCGA-55-8207-01 1 220154793 220154793 T C EPRS Missense_Mutation p.Y1127C 0.07 deleterious(0) probably_damaging(0.977) TCGA-55-8207-01 1 228288762 228288762 C A C1orf35 3'UTR 0.38 TCGA-55-8207-01 1 228584717 228584717 C A TRIM11 Missense_Mutation p.V264F 0.08 deleterious(0.01) benign(0.252) TCGA-55-8207-01 1 229779277 229779277 C A URB2 Intron 0.17 TCGA-55-8207-01 1 230839063 230839063 T C AGT Missense_Mutation p.I428V 0.37 tolerated(1) benign(0.017) TCGA-55-8207-01 1 236205296 236205296 G T NID1 Missense_Mutation p.T350N 0.34 tolerated(0.35) benign(0.002) TCGA-55-8207-01 1 236751265 236751265 C A HEATR1 Missense_Mutation p.A537S 0.26 deleterious(0.03) possibly_damaging(0.794) TCGA-55-8207-01 1 237802341 237802341 G A RYR2 Missense_Mutation p.V2319I 0.12 probably_damaging(0.926) TCGA-55-8207-01 1 240656237 240656237 C A GREM2 3'UTR 0.23 TCGA-55-8207-01 1 240656250 240656250 G T GREM2 3'UTR 0.20 TCGA-55-8207-01 1 247492785 247492785 C T ZNF496 Silent p.Q32Q 0.66 TCGA-55-8207-01 1 248039589 248039589 G T TRIM58 Missense_Mutation p.G420V 0.22 deleterious(0) probably_damaging(1) TCGA-55-8207-01 1 248487363 248487363 C A OR2M7 Missense_Mutation p.G170W 0.10 deleterious(0) probably_damaging(0.996) TCGA-55-8207-01 1 26784337 26784337 C G DHDDS Missense_Mutation p.P200A 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-55-8207-01 1 29095485 29095485 G C YTHDF2 3'UTR 0.18 TCGA-55-8207-01 1 40539814 40539814 T A PPT1 Silent p.L280L 0.21 TCGA-55-8207-01 1 47489477 47489477 G T CYP4X1 5'UTR 0.14 TCGA-55-8207-01 1 71418539 71418539 G C PTGER3 3'UTR 0.13 TCGA-55-8207-01 1 74507403 74507403 C A LRRIQ3 Missense_Mutation p.M404I 0.41 tolerated(0.51) benign(0) TCGA-55-8207-01 1 89728006 89728006 A T GBP5 Missense_Mutation p.M515K 0.24 deleterious(0.05) benign(0.065) TCGA-55-8207-01 20 24524000 24524000 C A SYNDIG1 Silent p.P89P 0.27 TCGA-55-8207-01 20 31984820 31984820 T A CDK5RAP1 Silent p.G17G 0.36 TCGA-55-8207-01 20 39791337 39791337 G A PLCG1 Missense_Mutation p.R218H 0.05 tolerated(0.43) possibly_damaging(0.557) TCGA-55-8207-01 20 46275823 46275823 G T NCOA3 Missense_Mutation p.A1087S 0.31 tolerated(0.41) benign(0.124) TCGA-55-8207-01 20 53208292 53208292 G A DOK5 Missense_Mutation p.A183T 0.36 deleterious(0.03) benign(0.406) TCGA-55-8207-01 20 56179675 56179675 A G ZBP1 Missense_Mutation p.V415A 0.35 tolerated(0.73) benign(0.005) TCGA-55-8207-01 20 60887005 60887016 ATGGGGGGCACC - LAMA5 In_Frame_Del p.G3199_H3202del 0.08 TCGA-55-8207-01 20 62407201 62407201 G T ZBTB46 Missense_Mutation p.P351H 0.32 tolerated(0.48) benign(0.006) TCGA-55-8207-01 20 9440444 9440444 C T PLCB4 Silent p.L1067L 0.48 TCGA-55-8207-01 21 10906818 10906818 C A TPTE 3'UTR 0.10 TCGA-55-8207-01 21 14982827 14982827 T C POTED Missense_Mutation p.M93T 0.61 tolerated_low_confidence(1) benign(0) TCGA-55-8207-01 21 15893514 15893514 C T SAMSN1 Missense_Mutation p.R97H 0.26 tolerated(0.1) benign(0.231) TCGA-55-8207-01 21 27840782 27840782 G A CYYR1 3'UTR 0.32 TCGA-55-8207-01 21 43160962 43160962 G A RIPK4 3'UTR 0.15 TCGA-55-8207-01 22 20128758 20128758 C T ZDHHC8 Missense_Mutation p.R305W 0.40 deleterious(0.03) possibly_damaging(0.847) TCGA-55-8207-01 22 21377449 21377449 C A P2RX6 Silent p.I200I 0.53 TCGA-55-8207-01 22 23404049 23404049 G A RTDR1 Missense_Mutation p.P243L 0.49 tolerated(0.29) benign(0.173) TCGA-55-8207-01 22 38823405 38823405 C T KCNJ4 Missense_Mutation p.G245S 0.22 deleterious(0.02) probably_damaging(0.984) TCGA-55-8207-01 2 109381727 109381727 G A RANBP2 Missense_Mutation p.V1578I 0.22 tolerated(0.4) benign(0.001) TCGA-55-8207-01 2 130859731 130859731 T C POTEF Silent p.S383S 0.27 TCGA-55-8207-01 2 131521388 131521388 G C AMER3 Missense_Mutation p.E581D 0.16 tolerated(0.15) benign(0.055) TCGA-55-8207-01 2 131984420 131984420 G T POTEE Missense_Mutation p.G279C 0.13 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-55-8207-01 2 139318416 139318416 A G SPOPL Silent p.K252K 0.18 TCGA-55-8207-01 2 141027838 141027839 TC GTG LRP1B Frame_Shift_Ins p.D4407Hfs*21 0.23 TCGA-55-8207-01 2 171850260 171850260 C G TLK1 3'UTR 0.15 TCGA-55-8207-01 2 171871449 171871449 C G TLK1 Missense_Mutation p.E416Q 0.14 tolerated(0.09) probably_damaging(0.943) TCGA-55-8207-01 2 175629093 175629093 A G CHRNA1 Silent p.F10F 0.39 TCGA-55-8207-01 2 177034068 177034069 - T HOXD3 Frame_Shift_Ins p.R77Efs*9 0.15 TCGA-55-8207-01 2 179612927 179612927 C A TTN Intron 0.12 TCGA-55-8207-01 2 182543540 182543540 G T NEUROD1 Silent p.P16P 0.30 TCGA-55-8207-01 2 183291390 183291390 C - PDE1A Intron 0.21 TCGA-55-8207-01 2 190554642 190554642 A G ANKAR Missense_Mutation p.K331E 0.13 deleterious(0) benign(0.242) TCGA-55-8207-01 2 191792176 191792176 A T GLS Missense_Mutation p.M465L 0.13 deleterious(0.01) probably_damaging(0.934) TCGA-55-8207-01 2 1921033 1921033 T A MYT1L Missense_Mutation p.Y519F 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-55-8207-01 2 196788457 196788457 G A DNAH7 Silent p.S1229S 0.38 TCGA-55-8207-01 2 206165336 206165336 G T PARD3B Missense_Mutation p.E694D 0.37 deleterious(0) probably_damaging(0.949) TCGA-55-8207-01 2 208632656 208632656 G A FZD5 Missense_Mutation p.P270S 0.25 deleterious(0) probably_damaging(0.996) TCGA-55-8207-01 2 210658455 210658455 G A UNC80 Silent p.V270V 0.33 TCGA-55-8207-01 2 211460216 211460216 C G CPS1 Silent p.S429S 0.32 TCGA-55-8207-01 2 219508688 219508688 G A ZNF142 Silent p.L851L 0.22 TCGA-55-8207-01 2 225672755 225672755 A C DOCK10 Nonsense_Mutation p.L1153* 0.28 TCGA-55-8207-01 2 228882690 228882690 A G SPHKAP Silent p.C960C 0.14 TCGA-55-8207-01 2 233321770 233321770 G T ALPI Silent p.R154R 0.33 TCGA-55-8207-01 2 238726828 238726828 G T RBM44 Missense_Mutation p.Q423H 0.08 tolerated(0.23) benign(0.178) TCGA-55-8207-01 2 238726829 238726829 G T RBM44 Missense_Mutation p.A424S 0.08 tolerated(0.25) benign(0.136) TCGA-55-8207-01 2 241727525 241727525 G T KIF1A Silent p.G102G 0.17 TCGA-55-8207-01 2 25470920 25470920 C A DNMT3A Nonsense_Mutation p.E281* 0.48 TCGA-55-8207-01 2 27360872 27360872 C A C2orf53 Missense_Mutation p.R109L 0.38 tolerated(0.63) benign(0.072) TCGA-55-8207-01 2 27521572 27521572 G T TRIM54 Missense_Mutation p.E102D 0.15 deleterious(0) possibly_damaging(0.452) TCGA-55-8207-01 2 27722027 27722027 G A GCKR Silent p.R149R 0.42 TCGA-55-8207-01 2 31483565 31483565 G T EHD3 Missense_Mutation p.R231L 0.19 deleterious(0) possibly_damaging(0.628) TCGA-55-8207-01 2 32523330 32523330 A G YIPF4 Missense_Mutation p.I145V 0.39 tolerated(0.17) benign(0.008) TCGA-55-8207-01 2 33246003 33246003 G T LTBP1 Missense_Mutation p.G198V 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-55-8207-01 2 43926984 43926984 G C PLEKHH2 Missense_Mutation p.G296A 0.18 tolerated_low_confidence(0.2) benign(0.017) TCGA-55-8207-01 2 46386830 46386830 A G PRKCE Missense_Mutation p.K669R 0.42 tolerated(1) benign(0.001) TCGA-55-8207-01 2 51254811 51254811 C T NRXN1 Missense_Mutation p.E201K 0.24 tolerated(0.7) benign(0.065) TCGA-55-8207-01 2 51254824 51254824 G T NRXN1 Silent p.P196P 0.30 TCGA-55-8207-01 2 68873388 68873388 T C PROKR1 Silent p.T145T 0.34 TCGA-55-8207-01 2 68873389 68873389 G T PROKR1 Missense_Mutation p.V146F 0.34 deleterious(0) possibly_damaging(0.896) TCGA-55-8207-01 2 73339574 73339574 G A RAB11FIP5 Missense_Mutation p.T111I 0.63 deleterious(0) probably_damaging(0.996) TCGA-55-8207-01 2 77746577 77746577 G T LRRTM4 Missense_Mutation p.L140I 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-55-8207-01 2 85893768 85893769 - G SFTPB Frame_Shift_Ins p.L134Pfs*11 0.22 TCGA-55-8207-01 2 90153774 90153774 C A IGKV3D-15 Silent p.L10L 0.11 TCGA-55-8207-01 2 90229117 90229117 C A IGKV1D-42 Missense_Mutation p.P18Q 0.14 tolerated(0.09) probably_damaging(0.912) TCGA-55-8207-01 3 112300107 112300107 G A SLC35A5 Silent p.P381P 0.23 TCGA-55-8207-01 3 120394669 120394669 A C HGD Silent p.P19P 0.36 TCGA-55-8207-01 3 138738694 138738694 G - PRR23B 3'UTR 0.26 TCGA-55-8207-01 3 147128847 147128847 C G ZIC1 Silent p.S316S 0.28 TCGA-55-8207-01 3 154886336 154886336 A T MME Silent p.A612A 0.21 TCGA-55-8207-01 3 168818745 168818745 C G MECOM Missense_Mutation p.C803S 0.24 deleterious(0) probably_damaging(0.936) TCGA-55-8207-01 3 46491363 46491363 G T LTF Silent p.A346A 0.34 TCGA-55-8207-01 3 4704822 4704822 G A ITPR1 Missense_Mutation p.E481K 0.12 tolerated(0.26) possibly_damaging(0.61) TCGA-55-8207-01 3 48955836 48955836 G A ARIH2OS Silent p.R249R 0.41 TCGA-55-8207-01 3 49691789 49691789 G T BSN Silent p.P1600P 0.21 TCGA-55-8207-01 3 52562512 52562512 C A NT5DC2 Missense_Mutation p.G198W 0.44 deleterious(0.01) probably_damaging(0.989) TCGA-55-8207-01 3 53700466 53700466 G C CACNA1D Silent p.P340P 0.21 TCGA-55-8207-01 3 56468916 56468916 T A ERC2 Silent p.T40T 0.36 TCGA-55-8207-01 3 77666791 77666791 C A ROBO2 Missense_Mutation p.P1157T 0.13 tolerated(0.08) possibly_damaging(0.641) TCGA-55-8207-01 3 87313652 87313652 G T POU1F1 Silent p.T101T 0.45 TCGA-55-8207-01 3 89521687 89521687 G T EPHA3 Missense_Mutation p.G922C 0.38 deleterious(0) possibly_damaging(0.866) TCGA-55-8207-01 3 98001807 98001807 C A OR5H2 Missense_Mutation p.P26T 0.20 deleterious(0.01) benign(0.072) TCGA-55-8207-01 4 110394218 110394218 A T SEC24B Silent p.P312P 0.33 TCGA-55-8207-01 4 114158219 114158219 C T ANK2 Missense_Mutation p.T187I 0.41 probably_damaging(1) TCGA-55-8207-01 4 141543632 141543632 T A TBC1D9 Missense_Mutation p.H1173L 0.22 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-55-8207-01 4 146567138 146567138 G A MMAA Missense_Mutation p.G188E 0.47 deleterious(0) probably_damaging(1) TCGA-55-8207-01 4 147560397 147560397 C A POU4F2 Silent p.G35G 0.27 TCGA-55-8207-01 4 154702676 154702676 G T SFRP2 Nonsense_Mutation p.S272* 0.34 TCGA-55-8207-01 4 154702677 154702677 A G SFRP2 Missense_Mutation p.S272P 0.34 tolerated(0.13) probably_damaging(0.995) TCGA-55-8207-01 4 159789520 159789520 C G FNIP2 Missense_Mutation p.L578V 0.28 deleterious(0.01) probably_damaging(0.946) TCGA-55-8207-01 4 164272515 164272515 C A NPY5R Silent p.R364R 0.44 TCGA-55-8207-01 4 175898629 175898629 C A ADAM29 Silent p.P651P 0.39 TCGA-55-8207-01 4 187130409 187130409 G T CYP4V2 Missense_Mutation p.G463V 0.35 deleterious(0) probably_damaging(1) TCGA-55-8207-01 4 22390058 22390058 G C GPR125 Missense_Mutation p.S1079C 0.22 deleterious(0.03) benign(0.401) TCGA-55-8207-01 4 2916624 2916624 C T ADD1 Missense_Mutation p.T571M 0.29 deleterious(0.03) probably_damaging(0.981) TCGA-55-8207-01 4 30724796 30724796 C A PCDH7 Silent p.I584I 0.39 TCGA-55-8207-01 4 38830796 38830796 T A TLR6 Missense_Mutation p.Q100L 0.18 tolerated(0.09) benign(0.008) TCGA-55-8207-01 4 4199804 4199804 T A OTOP1 Missense_Mutation p.N253Y 0.43 deleterious(0) probably_damaging(0.987) TCGA-55-8207-01 4 53265 53265 G T ZNF595 5'UTR 0.22 TCGA-55-8207-01 4 73181665 73181665 T C ADAMTS3 Silent p.K503K 0.51 TCGA-55-8207-01 4 76881291 76881291 C A SDAD1 Missense_Mutation p.D471Y 0.35 deleterious(0.01) benign(0.209) TCGA-55-8207-01 4 9785004 9785004 G A DRD5 Missense_Mutation p.A451T 0.39 tolerated(0.62) benign(0.009) TCGA-55-8207-01 5 102522033 102522033 C T PPIP5K2 Missense_Mutation p.A1061V 0.26 tolerated_low_confidence(0.07) benign(0.294) TCGA-55-8207-01 5 10450214 10450214 A T ROPN1L Missense_Mutation p.M136L 0.34 tolerated(0.44) benign(0.019) TCGA-55-8207-01 5 126214019 126214019 A T MARCH3 Missense_Mutation p.F154Y 0.24 deleterious(0.02) possibly_damaging(0.459) TCGA-55-8207-01 5 127497454 127497454 G A SLC12A2 Missense_Mutation p.A860T 0.17 deleterious(0.05) possibly_damaging(0.493) TCGA-55-8207-01 5 130791538 130791538 G A RAPGEF6 Missense_Mutation p.P1011L 0.24 deleterious(0) probably_damaging(1) TCGA-55-8207-01 5 134076988 134076988 A C CAMLG Missense_Mutation p.R136S 0.49 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-55-8207-01 5 140228055 140228055 A G PCDHA9 5'UTR 0.30 TCGA-55-8207-01 5 140250616 140250616 G A PCDHA11 Missense_Mutation p.R643H 0.17 deleterious_low_confidence(0.02) benign(0.24) TCGA-55-8207-01 5 140480313 140480313 G T PCDHB3 Missense_Mutation p.G27V 0.35 tolerated_low_confidence(0.08) benign(0.038) TCGA-55-8207-01 5 140590189 140590189 G A PCDHB12 Silent p.A570A 0.19 TCGA-55-8207-01 5 140595284 140595284 G A PCDHB13 Missense_Mutation p.R530H 0.15 tolerated_low_confidence(0.24) benign(0.003) TCGA-55-8207-01 5 140603145 140603145 T A PCDHB14 Nonsense_Mutation p.L23* 0.52 TCGA-55-8207-01 5 140603146 140603146 G T PCDHB14 Missense_Mutation p.L23F 0.54 tolerated_low_confidence(0.16) possibly_damaging(0.646) TCGA-55-8207-01 5 140719026 140719026 G T PCDHGA2 Missense_Mutation p.G163V 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-55-8207-01 5 140810965 140810965 G T PCDHGA12 Silent p.T213T 0.30 TCGA-55-8207-01 5 167517633 167517633 C - TENM2 Frame_Shift_Del p.R525Gfs*46 0.23 TCGA-55-8207-01 5 167674960 167674960 C G TENM2 Missense_Mutation p.S2339C 0.12 deleterious(0) probably_damaging(0.968) TCGA-55-8207-01 5 167689264 167689264 G A TENM2 Missense_Mutation p.D2592N 0.07 tolerated(0.07) probably_damaging(0.999) TCGA-55-8207-01 5 176053742 176053742 C A SNCB Missense_Mutation p.V48L 0.52 deleterious(0.05) benign(0.031) TCGA-55-8207-01 5 178541263 178541263 A T ADAMTS2 Missense_Mutation p.S1081T 0.14 tolerated(0.05) benign(0.282) TCGA-55-8207-01 5 33461811 33461811 G A TARS Missense_Mutation p.E564K 0.29 tolerated(0.67) benign(0.001) TCGA-55-8207-01 5 35965844 35965844 C T UGT3A1 Missense_Mutation p.V163M 0.37 deleterious(0) probably_damaging(1) TCGA-55-8207-01 5 37186460 37186460 C A C5orf42 Nonsense_Mutation p.E1373* 0.34 TCGA-55-8207-01 5 52183682 52183682 G T ITGA1 Missense_Mutation p.R270I 0.32 tolerated(0.06) benign(0.242) TCGA-55-8207-01 5 54420695 54420695 T C CDC20B Missense_Mutation p.H384R 0.34 tolerated(0.39) benign(0.004) TCGA-55-8207-01 5 64020194 64020194 T A SREK1IP1 3'UTR 0.34 TCGA-55-8207-01 5 74026156 74026156 C G GFM2 Missense_Mutation p.G552A 0.27 deleterious(0.02) possibly_damaging(0.698) TCGA-55-8207-01 5 82843811 82843811 A T VCAN Missense_Mutation p.N3134I 0.33 deleterious(0) probably_damaging(0.998) TCGA-55-8207-01 5 89971181 89971181 C G GPR98 Missense_Mutation p.I1744M 0.23 benign(0.165) TCGA-55-8207-01 5 90079698 90079698 G A GPR98 Missense_Mutation p.G4493R 0.33 probably_damaging(0.996) TCGA-55-8207-01 6 121769134 121769134 G A GJA1 Missense_Mutation p.E381K 0.23 tolerated(0.27) benign(0.16) TCGA-55-8207-01 6 132713365 132713365 G T MOXD1 Intron 0.67 TCGA-55-8207-01 6 132892095 132892095 T C TAAR6 Missense_Mutation p.I212T 0.53 tolerated(0.08) benign(0.021) TCGA-55-8207-01 6 148840912 148840912 G T SASH1 Missense_Mutation p.K364N 0.62 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-55-8207-01 6 160977164 160977164 C G LPA Missense_Mutation p.Q1622H 0.22 deleterious(0.04) probably_damaging(0.996) TCGA-55-8207-01 6 28540252 28540252 C A SCAND3 Missense_Mutation p.Q1138H 0.31 deleterious_low_confidence(0.01) benign(0.28) TCGA-55-8207-01 6 31238092 31238092 T - HLA-C Frame_Shift_Del p.T264Pfs*33 0.16 TCGA-55-8207-01 6 31847814 31847814 G A EHMT2 3'UTR 0.12 TCGA-55-8207-01 6 33630399 33630399 T A ITPR3 Missense_Mutation p.L269Q 0.32 tolerated(0.08) probably_damaging(0.997) TCGA-55-8207-01 6 39832223 39832223 C T DAAM2 Silent p.P91P 0.28 TCGA-55-8207-01 6 43270469 43270469 G A SLC22A7 Silent p.L451L 0.35 TCGA-55-8207-01 6 46659287 46659287 T C TDRD6 Missense_Mutation p.L1141P 0.35 deleterious(0) probably_damaging(1) TCGA-55-8207-01 6 56483599 56483599 C G DST Intron 0.32 TCGA-55-8207-01 6 75797446 75797446 T C COL12A1 Missense_Mutation p.R3010G 0.23 probably_damaging(0.989) TCGA-55-8207-01 6 75843620 75843620 T A COL12A1 Missense_Mutation p.Q1873L 0.45 benign(0.16) TCGA-55-8207-01 6 87968147 87968147 C T ZNF292 Silent p.T1600T 0.50 TCGA-55-8207-01 7 100681296 100681296 C A MUC17 Nonsense_Mutation p.S2200* 0.39 TCGA-55-8207-01 7 102574728 102574728 A T LRRC17 Missense_Mutation p.E123V 0.15 tolerated(0.05) benign(0.112) TCGA-55-8207-01 7 107664424 107664424 C A LAMB4 3'UTR 0.17 TCGA-55-8207-01 7 113518865 113518865 C A PPP1R3A Missense_Mutation p.R761L 0.38 tolerated(1) benign(0.01) TCGA-55-8207-01 7 120740123 120740123 C G CPED1 Missense_Mutation p.P298R 0.40 deleterious(0.02) probably_damaging(0.96) TCGA-55-8207-01 7 136700946 136700946 C A CHRM2 Missense_Mutation p.A445D 0.36 deleterious(0.01) benign(0.072) TCGA-55-8207-01 7 141629976 141629976 G A CLEC5A Silent p.G165G 0.21 TCGA-55-8207-01 7 141672872 141672872 G A TAS2R38 Silent p.F206F 0.13 TCGA-55-8207-01 7 142180550 142180550 G T TRBV6-5 Silent p.S103S 0.41 TCGA-55-8207-01 7 142460308 142460308 C A PRSS1 Missense_Mutation p.L161M 0.24 deleterious(0.04) probably_damaging(0.987) TCGA-55-8207-01 7 143048740 143048740 C A CLCN1 Silent p.P883P 0.28 TCGA-55-8207-01 7 143056019 143056019 G T FAM131B Missense_Mutation p.P123T 0.27 tolerated_low_confidence(0.77) benign(0.108) TCGA-55-8207-01 7 143270242 143270242 G T CTAGE15 Missense_Mutation p.L444F 0.31 tolerated(0.08) benign(0.222) TCGA-55-8207-01 7 14722260 14722260 G T DGKB Missense_Mutation p.P318Q 0.32 tolerated(0.12) possibly_damaging(0.812) TCGA-55-8207-01 7 14722261 14722261 G T DGKB Missense_Mutation p.P318T 0.31 tolerated(0.27) benign(0.046) TCGA-55-8207-01 7 150390156 150390156 G T GIMAP2 Missense_Mutation p.C261F 0.24 tolerated(0.65) benign(0.002) TCGA-55-8207-01 7 150751345 150751345 A T CDK5 Missense_Mutation p.V249E 0.16 tolerated(0.9) benign(0.001) TCGA-55-8207-01 7 15584468 15584468 G T AGMO Missense_Mutation p.S113Y 0.20 deleterious(0) probably_damaging(0.986) TCGA-55-8207-01 7 20698692 20698692 A T ABCB5 Intron 0.39 TCGA-55-8207-01 7 32910140 32910140 T A KBTBD2 Missense_Mutation p.Q230L 0.25 tolerated(0.09) benign(0.095) TCGA-55-8207-01 7 35289649 35289649 G T TBX20 Silent p.A98A 0.20 TCGA-55-8207-01 7 36763782 36763782 C A AOAH 5'UTR 0.24 TCGA-55-8207-01 7 44578734 44578734 C A NPC1L1 Missense_Mutation p.R421M 0.06 tolerated(0.13) benign(0.007) TCGA-55-8207-01 7 82585973 82585973 T A PCLO Silent p.S1432S 0.24 TCGA-55-8207-01 7 88964303 88964304 - G ZNF804B Frame_Shift_Ins p.K671Efs*10 0.15 TCGA-55-8207-01 7 92730817 92730817 C G SAMD9 Missense_Mutation p.G1532R 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-8207-01 8 106814523 106814523 G T ZFPM2 Missense_Mutation p.R738L 0.13 deleterious(0) probably_damaging(0.998) TCGA-55-8207-01 8 106814645 106814645 G A ZFPM2 Missense_Mutation p.G779R 0.17 tolerated(0.08) benign(0.209) TCGA-55-8207-01 8 110460467 110460467 A T PKHD1L1 Missense_Mutation p.T1958S 0.20 tolerated(0.35) possibly_damaging(0.515) TCGA-55-8207-01 8 113318300 113318300 G A CSMD3 Silent p.L2669L 0.03 TCGA-55-8207-01 8 113662416 113662416 C A CSMD3 Missense_Mutation p.W1056L 0.40 deleterious(0) probably_damaging(0.967) TCGA-55-8207-01 8 113678527 113678527 G C CSMD3 Missense_Mutation p.S932C 0.15 tolerated(0.09) probably_damaging(0.995) TCGA-55-8207-01 8 113694814 113694814 C A CSMD3 Missense_Mutation p.R845L 0.39 deleterious(0.01) probably_damaging(1) TCGA-55-8207-01 8 116427156 116427156 C A TRPS1 Nonsense_Mutation p.E994* 0.40 TCGA-55-8207-01 8 142154284 142154284 G T DENND3 Missense_Mutation p.V141L 0.39 tolerated(0.31) possibly_damaging(0.718) TCGA-55-8207-01 8 142228333 142228333 C A SLC45A4 Missense_Mutation p.R418L 0.33 tolerated(0.12) possibly_damaging(0.884) TCGA-55-8207-01 8 143957737 143957737 C A CYP11B1 Nonsense_Mutation p.E292* 0.34 TCGA-55-8207-01 8 2813174 2813174 C G CSMD1 Missense_Mutation p.G3311R 0.52 probably_damaging(1) TCGA-55-8207-01 8 48962437 48962437 A T UBE2V2 Missense_Mutation p.S64C 0.17 deleterious(0) benign(0.085) TCGA-55-8207-01 8 51621467 51621467 C A SNTG1 Missense_Mutation p.L405I 0.39 tolerated(0.19) benign(0.002) TCGA-55-8207-01 8 53852636 53852636 G A NPBWR1 Missense_Mutation p.A57T 0.08 tolerated(0.22) probably_damaging(0.999) TCGA-55-8207-01 8 54934677 54934677 G T TCEA1 Missense_Mutation p.D3E 0.37 tolerated(1) benign(0.011) TCGA-55-8207-01 8 56436339 56436339 C A XKR4 Silent p.G502G 0.18 TCGA-55-8207-01 8 87755762 87755762 G T CNGB3 Missense_Mutation p.H32N 0.30 tolerated(0.65) benign(0) TCGA-55-8207-01 8 95866086 95866086 A T INTS8 Missense_Mutation p.L565F 0.18 tolerated(0.31) probably_damaging(0.999) TCGA-55-8207-01 8 95866092 95866092 A T INTS8 Missense_Mutation p.R567S 0.19 deleterious(0.01) possibly_damaging(0.541) TCGA-55-8207-01 8 99441303 99441303 T C KCNS2 Missense_Mutation p.W366R 0.24 deleterious(0) probably_damaging(0.998) TCGA-55-8207-01 9 104133595 104133595 C T BAAT Missense_Mutation p.S31N 0.08 deleterious(0) benign(0.021) TCGA-55-8207-01 9 104499833 104499833 G A GRIN3A Silent p.P143P 0.45 TCGA-55-8207-01 9 20448130 20448130 C A MLLT3 Missense_Mutation p.K137N 0.47 deleterious(0.01) benign(0.197) TCGA-55-8207-01 9 77286764 77286764 G C RORB Missense_Mutation p.A391P 0.50 deleterious(0) probably_damaging(0.981) TCGA-55-8207-01 9 84564820 84564820 G C RP11-383M4.6 Intron 0.62 TCGA-55-8207-01 X 106185873 106185873 T C MORC4 Missense_Mutation p.R750G 0.75 tolerated(0.16) benign(0.001) TCGA-55-8207-01 X 107938036 107938036 G C COL4A5 Splice_Site p.X1569_splice 0.64 TCGA-55-8207-01 X 110385361 110385361 T C PAK3 Silent p.S71S 0.72 TCGA-55-8207-01 X 138633338 138633338 A G F9 Missense_Mutation p.N213S 0.67 tolerated(0.15) benign(0.024) TCGA-55-8207-01 X 140994193 140994193 C A MAGEC1 Missense_Mutation p.Q335K 0.64 deleterious_low_confidence(0) benign(0.042) TCGA-55-8207-01 X 150906954 150906954 G T CNGA2 5'UTR 0.71 TCGA-55-8207-01 X 53231100 53231101 - A KDM5C Frame_Shift_Ins p.Y601Lfs*21 0.36 TCGA-55-8207-01 X 591847 591847 A T SHOX Missense_Mutation p.K72M 0.64 deleterious(0.05) possibly_damaging(0.784) TCGA-55-8207-01 X 73524477 73524477 G T ZCCHC13 Missense_Mutation p.A126S 0.79 tolerated(0.39) benign(0.051) TCGA-55-8207-01 X 86772893 86772893 T C KLHL4 5'UTR 0.63 TCGA-55-8208-01 10 103921999 103921999 C T NOLC1 Silent p.V691V 0.07 TCGA-55-8208-01 10 104572969 104572969 G A WBP1L Missense_Mutation p.E325K 0.04 tolerated(0.08) benign(0.287) TCGA-55-8208-01 10 106153164 106153165 - A CCDC147 Frame_Shift_Ins p.E537Rfs*24 0.11 TCGA-55-8208-01 10 111872568 111872568 G C ADD3 Missense_Mutation p.E77Q 0.05 deleterious(0.02) possibly_damaging(0.752) TCGA-55-8208-01 10 11963176 11963176 G C UPF2 3'UTR 0.06 TCGA-55-8208-01 10 120354355 120354355 G T PRLHR Nonsense_Mutation p.C134* 0.11 TCGA-55-8208-01 10 125521547 125521547 T A CPXM2 Missense_Mutation p.T540S 0.08 tolerated(0.47) benign(0.042) TCGA-55-8208-01 10 131676092 131676092 G C EBF3 Silent p.L192L 0.06 TCGA-55-8208-01 10 18828582 18828582 G A CACNB2 Missense_Mutation p.D638N 0.10 tolerated_low_confidence(0.08) possibly_damaging(0.455) TCGA-55-8208-01 10 26359044 26359044 C G MYO3A Missense_Mutation p.S392C 0.10 deleterious(0) probably_damaging(0.95) TCGA-55-8208-01 10 26359085 26359085 C T MYO3A Missense_Mutation p.H406Y 0.07 deleterious(0) probably_damaging(1) TCGA-55-8208-01 10 26851278 26851278 C A APBB1IP Missense_Mutation p.P465T 0.05 tolerated(0.2) benign(0.002) TCGA-55-8208-01 10 26851280 26851280 C A APBB1IP Silent p.P465P 0.05 TCGA-55-8208-01 10 27687275 27687275 A G PTCHD3 Missense_Mutation p.I751T 0.10 deleterious(0) probably_damaging(0.988) TCGA-55-8208-01 10 33211645 33211645 G A ITGB1 Missense_Mutation p.H321Y 0.05 deleterious(0) probably_damaging(0.935) TCGA-55-8208-01 10 49459740 49459740 A G FRMPD2 Intron 0.06 TCGA-55-8208-01 10 55582710 55582710 T A PCDH15 Silent p.P1594P 0.07 TCGA-55-8208-01 10 55755334 55755334 G A PCDH15 Intron 0.10 TCGA-55-8208-01 10 5768869 5768869 G A FAM208B Missense_Mutation p.D125N 0.07 deleterious(0.03) benign(0.376) TCGA-55-8208-01 10 60936716 60936716 G T PHYHIPL Missense_Mutation p.D35Y 0.10 deleterious_low_confidence(0.01) benign(0.365) TCGA-55-8208-01 10 79743983 79743983 C T POLR3A Missense_Mutation p.E1106K 0.05 deleterious(0) probably_damaging(0.941) TCGA-55-8208-01 10 88767430 88767430 G C RP11-96C23.10 3'Flank 0.03 TCGA-55-8208-01 10 98743956 98743956 C T C10orf12 Missense_Mutation p.P937S 0.09 deleterious(0.02) possibly_damaging(0.586) TCGA-55-8208-01 11 103907614 103907614 A - DDI1 Frame_Shift_Del p.S22Afs*73 0.09 TCGA-55-8208-01 11 112088544 112088544 G A BCO2 Missense_Mutation p.E563K 0.11 deleterious(0.04) probably_damaging(0.952) TCGA-55-8208-01 11 119996441 119996441 C A TRIM29 Missense_Mutation p.D431Y 0.06 deleterious(0) possibly_damaging(0.75) TCGA-55-8208-01 11 20473680 20473680 A G PRMT3 Missense_Mutation p.Y333C 0.14 probably_damaging(0.988) TCGA-55-8208-01 11 34101264 34101264 G C CAPRIN1 Missense_Mutation p.E260Q 0.05 deleterious(0.01) probably_damaging(0.962) TCGA-55-8208-01 11 4661079 4661079 A G OR51D1 Missense_Mutation p.H20R 0.05 tolerated(0.2) benign(0.001) TCGA-55-8208-01 11 4825823 4825823 T C OR52R1 5'Flank 0.16 TCGA-55-8208-01 11 4843324 4843324 C T OR51F2 Nonsense_Mutation p.R237* 0.04 TCGA-55-8208-01 11 51412365 51412365 C A OR4A5 Missense_Mutation p.V11F 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.891) TCGA-55-8208-01 11 5444306 5444306 C A OR51Q1 Silent p.I292I 0.13 TCGA-55-8208-01 11 55111635 55111635 C A OR4A16 Missense_Mutation p.P320H 0.13 tolerated_low_confidence(0.14) benign(0.001) TCGA-55-8208-01 11 55322314 55322314 G T OR4C15 Missense_Mutation p.A178S 0.07 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-55-8208-01 11 56949394 56949394 C G LRRC55 Missense_Mutation p.D9E 0.05 tolerated_low_confidence(0.24) benign(0.018) TCGA-55-8208-01 11 57235268 57235268 G C RTN4RL2 Missense_Mutation p.R73P 0.07 tolerated(0.18) possibly_damaging(0.772) TCGA-55-8208-01 11 59344452 59344452 G A OSBP Missense_Mutation p.L703F 0.08 deleterious(0) probably_damaging(1) TCGA-55-8208-01 11 60183717 60183717 C A MS4A14 Missense_Mutation p.Q459K 0.10 deleterious(0.01) benign(0.062) TCGA-55-8208-01 11 62763220 62763220 C G SLC22A8 Silent p.R319R 0.04 TCGA-55-8208-01 11 63426328 63426328 T C ATL3 Missense_Mutation p.T104A 0.11 tolerated(0.1) benign(0.029) TCGA-55-8208-01 11 64507579 64507579 T C RASGRP2 Missense_Mutation p.K143R 0.08 deleterious(0.02) benign(0.023) TCGA-55-8208-01 11 65482191 65482191 C G KAT5 Missense_Mutation p.L306V 0.03 tolerated(0.29) benign(0.021) TCGA-55-8208-01 11 6912905 6912905 T G OR2D2 Missense_Mutation p.Y276S 0.08 deleterious(0.01) probably_damaging(0.927) TCGA-55-8208-01 11 72408101 72408101 G C ARAP1 Silent p.L1031L 0.06 TCGA-55-8208-01 11 73681173 73681173 G T DNAJB13 3'UTR 0.06 TCGA-55-8208-01 12 109292526 109292526 A G DAO Missense_Mutation p.H256R 0.17 tolerated(0.16) benign(0.034) TCGA-55-8208-01 12 112622517 112622517 C A HECTD4 Missense_Mutation p.R3272L 0.14 possibly_damaging(0.834) TCGA-55-8208-01 12 113834980 113834980 T A SDS Nonsense_Mutation p.K215* 0.17 TCGA-55-8208-01 12 11506201 11506201 C T PRB1 Missense_Mutation p.G146E 0.11 tolerated_low_confidence(0.38) unknown(0) TCGA-55-8208-01 12 121098586 121098586 C T CABP1 Silent p.L294L 0.05 TCGA-55-8208-01 12 123782571 123782571 C G SBNO1 Missense_Mutation p.K1331N 0.04 deleterious(0) probably_damaging(0.954) TCGA-55-8208-01 12 18499598 18499598 G A PIK3C2G Missense_Mutation p.E485K 0.07 tolerated(0.12) benign(0.027) TCGA-55-8208-01 12 28458678 28458678 C T CCDC91 Missense_Mutation p.S69L 0.11 tolerated(0.54) benign(0.005) TCGA-55-8208-01 12 43819416 43819416 A G ADAMTS20 Silent p.D1395D 0.13 TCGA-55-8208-01 12 4919286 4919286 G C KCNA6 Missense_Mutation p.D27H 0.11 deleterious_low_confidence(0.01) benign(0.216) TCGA-55-8208-01 12 50471817 50471817 G C ASIC1 Missense_Mutation p.Q248H 0.04 deleterious(0) probably_damaging(0.967) TCGA-55-8208-01 12 52939378 52939378 G A KRT71 Missense_Mutation p.S444L 0.08 deleterious(0) possibly_damaging(0.821) TCGA-55-8208-01 12 54396362 54396362 C G HOXC9 Silent p.L229L 0.15 TCGA-55-8208-01 12 54731086 54731086 C T COPZ1 Intron 0.04 TCGA-55-8208-01 12 63083557 63083557 G A PPM1H Silent p.T389T 0.08 TCGA-55-8208-01 12 67696342 67696342 G A CAND1 Missense_Mutation p.D414N 0.04 tolerated(0.43) benign(0.151) TCGA-55-8208-01 12 69964132 69964132 G T FRS2 Missense_Mutation p.G30W 0.10 deleterious(0) probably_damaging(1) TCGA-55-8208-01 12 70824293 70824293 C G KCNMB4 Missense_Mutation p.H165D 0.03 deleterious(0.05) benign(0.039) TCGA-55-8208-01 12 71531833 71531833 C A TSPAN8 Missense_Mutation p.R115L 0.08 tolerated(0.21) benign(0.111) TCGA-55-8208-01 12 89745769 89745769 G A DUSP6 Silent p.I16I 0.05 TCGA-55-8208-01 12 9020589 9020589 C G A2ML1 Missense_Mutation p.T1290S 0.13 tolerated(0.69) benign(0.002) TCGA-55-8208-01 12 97328842 97328842 A G NEDD1 Missense_Mutation p.N200S 0.05 deleterious(0.03) probably_damaging(0.979) TCGA-55-8208-01 12 97330537 97330537 C T NEDD1 Missense_Mutation p.H297Y 0.06 deleterious(0) probably_damaging(0.974) TCGA-55-8208-01 13 110826257 110826257 C T COL4A1 Silent p.K1165K 0.07 TCGA-55-8208-01 13 31232520 31232520 C A USPL1 Missense_Mutation p.S769Y 0.08 deleterious(0) probably_damaging(0.995) TCGA-55-8208-01 13 36362408 36362408 A G DCLK1 Silent p.F691F 0.06 TCGA-55-8208-01 13 42390887 42390887 G C VWA8 Missense_Mutation p.L632V 0.05 tolerated(0.8) benign(0.012) TCGA-55-8208-01 13 48919290 48919290 T A RB1 Nonsense_Mutation p.L152* 0.14 TCGA-55-8208-01 13 67800212 67800212 C T PCDH9 Silent p.L787L 0.03 TCGA-55-8208-01 13 73409403 73409403 G A PIBF1 Missense_Mutation p.E374K 0.09 deleterious(0) probably_damaging(0.991) TCGA-55-8208-01 14 105407933 105407933 C T AHNAK2 Missense_Mutation p.E4619K 0.09 benign(0.019) TCGA-55-8208-01 14 106307354 106307354 T A IGHD Missense_Mutation p.S229C 0.27 deleterious(0) probably_damaging(0.994) TCGA-55-8208-01 14 20295985 20295985 C G OR4N2 Missense_Mutation p.I126M 0.09 deleterious(0) probably_damaging(0.91) TCGA-55-8208-01 14 45398320 45398320 C A KLHL28 Missense_Mutation p.V543L 0.11 deleterious(0.01) probably_damaging(0.955) TCGA-55-8208-01 14 57858384 57858384 G C NAA30 Missense_Mutation p.E237Q 0.04 deleterious(0) probably_damaging(0.993) TCGA-55-8208-01 14 64599067 64599067 G C SYNE2 Missense_Mutation p.E4809Q 0.05 probably_damaging(0.994) TCGA-55-8208-01 14 75373785 75373785 C G RPS6KL1 Missense_Mutation p.G528R 0.25 deleterious(0) probably_damaging(0.981) TCGA-55-8208-01 14 75475933 75475933 G C EIF2B2 3'UTR 0.19 TCGA-55-8208-01 14 88904619 88904619 G A SPATA7 Silent p.E551E 0.03 TCGA-55-8208-01 14 91875058 91875058 T A CCDC88C Missense_Mutation p.N72I 0.05 tolerated(0.06) benign(0.08) TCGA-55-8208-01 14 93182534 93182534 C T LGMN Silent p.L117L 0.05 TCGA-55-8208-01 14 93673190 93673190 C G C14orf142 Missense_Mutation p.D65H 0.06 deleterious(0.02) probably_damaging(0.919) TCGA-55-8208-01 14 95670157 95670157 C A CLMN Missense_Mutation p.G510V 0.11 deleterious_low_confidence(0) possibly_damaging(0.894) TCGA-55-8208-01 14 99183552 99183552 G A C14orf177 Missense_Mutation p.A107T 0.04 tolerated_low_confidence(0.44) possibly_damaging(0.682) TCGA-55-8208-01 15 102215836 102215836 T G TARSL2 Silent p.L585L 0.05 TCGA-55-8208-01 15 25213119 25213119 C A SNURF Missense_Mutation p.P51T 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.655) TCGA-55-8208-01 15 41799416 41799416 C A LTK Missense_Mutation p.R473L 0.07 deleterious_low_confidence(0.01) benign(0.182) TCGA-55-8208-01 15 41991342 41991342 C T MGA Missense_Mutation p.P725S 0.07 deleterious(0) probably_damaging(0.937) TCGA-55-8208-01 15 42108778 42108778 G A MAPKBP1 Silent p.L511L 0.05 TCGA-55-8208-01 15 44903130 44903130 T A SPG11 Missense_Mutation p.T1067S 0.06 tolerated(1) possibly_damaging(0.801) TCGA-55-8208-01 15 52901540 52901540 G A FAM214A Missense_Mutation p.S524L 0.06 tolerated(0.08) benign(0.016) TCGA-55-8208-01 15 53081701 53081701 G A ONECUT1 Silent p.H127H 0.11 TCGA-55-8208-01 15 63102159 63102159 G A TLN2 Silent p.V2233V 0.06 TCGA-55-8208-01 15 76430073 76430073 G A C15orf27 Missense_Mutation p.E22K 0.03 deleterious_low_confidence(0) possibly_damaging(0.819) TCGA-55-8208-01 15 84651181 84651181 G A ADAMTSL3 Missense_Mutation p.C934Y 0.03 deleterious(0) probably_damaging(1) TCGA-55-8208-01 15 85486726 85486726 C T SLC28A1 Silent p.F544F 0.05 TCGA-55-8208-01 15 89008020 89008020 T C MRPL46 Missense_Mutation p.Q168R 0.04 deleterious(0.05) benign(0.004) TCGA-55-8208-01 15 89401532 89401532 G A ACAN Missense_Mutation p.G1906R 0.06 deleterious(0) possibly_damaging(0.831) TCGA-55-8208-01 16 1889352 1889352 G A MEIOB Silent p.L374L 0.10 TCGA-55-8208-01 16 20347978 20347978 G T UMOD Silent p.I604I 0.11 TCGA-55-8208-01 16 20435256 20435256 C T ACSM5 Silent p.T262T 0.08 TCGA-55-8208-01 16 20635538 20635538 C T ACSM1 Splice_Site p.X510_splice 0.09 TCGA-55-8208-01 16 23491170 23491170 G A GGA2 Silent p.L349L 0.11 TCGA-55-8208-01 16 27506630 27506630 G A GTF3C1 Missense_Mutation p.S845F 0.06 deleterious(0.02) benign(0.069) TCGA-55-8208-01 16 30537359 30537359 C G ZNF768 Missense_Mutation p.E34D 0.05 tolerated_low_confidence(0.09) benign(0) TCGA-55-8208-01 16 30735392 30735392 G T SRCAP Silent p.L1549L 0.10 TCGA-55-8208-01 16 31141422 31141422 T C KAT8 Missense_Mutation p.Y286H 0.07 deleterious(0.02) probably_damaging(0.996) TCGA-55-8208-01 16 50750868 50750868 G A NOD2 Silent p.Q871Q 0.03 TCGA-55-8208-01 16 57935286 57935286 G A CNGB1 Silent p.V982V 0.05 TCGA-55-8208-01 16 67188570 67188570 G A TRADD Silent p.P307P 0.12 TCGA-55-8208-01 16 69143832 69143832 G A HAS3 Silent p.V178V 0.09 TCGA-55-8208-01 16 71610239 71610239 C T TAT Missense_Mutation p.R27K 0.05 tolerated_low_confidence(0.85) benign(0.006) TCGA-55-8208-01 16 720761 720761 C T RHOT2 Silent p.L209L 0.09 TCGA-55-8208-01 16 84872231 84872231 C T CRISPLD2 Missense_Mutation p.H44Y 0.11 tolerated(0.08) benign(0.013) TCGA-55-8208-01 16 89620293 89620293 C T SPG7 Silent p.F676F 0.09 TCGA-55-8208-01 17 10323413 10323413 C A MYH8 Missense_Mutation p.E44D 0.10 tolerated(1) benign(0.001) TCGA-55-8208-01 17 16701742 16701742 G C CCDC144A 3'UTR 0.03 TCGA-55-8208-01 17 30349420 30349420 C G LRRC37B Missense_Mutation p.L419V 0.07 tolerated(0.33) benign(0.134) TCGA-55-8208-01 17 33521120 33521120 C A SLC35G3 Silent p.S69S 0.13 TCGA-55-8208-01 17 35614761 35614761 G A ACACA Nonsense_Mutation p.Q564* 0.04 TCGA-55-8208-01 17 40962838 40962838 G A BECN1 Silent p.F431F 0.04 TCGA-55-8208-01 17 41141482 41141482 G T RUNDC1 Missense_Mutation p.R261L 0.10 deleterious(0) probably_damaging(0.984) TCGA-55-8208-01 17 42458362 42458362 C G ITGA2B Missense_Mutation p.Q426H 0.06 tolerated(0.18) benign(0.017) TCGA-55-8208-01 17 43226681 43226681 G A HEXIM1 Missense_Mutation p.E42K 0.08 tolerated_low_confidence(0.2) benign(0.003) TCGA-55-8208-01 17 43309813 43309813 G A FMNL1 Missense_Mutation p.R98Q 0.06 deleterious(0.02) unknown(0) TCGA-55-8208-01 17 45777036 45777036 C A TBKBP1 Missense_Mutation p.A282E 0.03 tolerated(0.65) probably_damaging(0.97) TCGA-55-8208-01 17 49340701 49340701 C G UTP18 Missense_Mutation p.Q137E 0.07 tolerated(0.61) benign(0.005) TCGA-55-8208-01 17 5264821 5264821 C T RABEP1 Nonsense_Mutation p.Q472* 0.06 TCGA-55-8208-01 17 6351054 6351054 C A FAM64A Nonsense_Mutation p.S189* 0.05 TCGA-55-8208-01 17 64800140 64800140 A G PRKCA Silent p.L668L 0.12 TCGA-55-8208-01 17 65174830 65174830 G A HELZ Missense_Mutation p.R459W 0.08 deleterious(0.03) possibly_damaging(0.823) TCGA-55-8208-01 17 65889560 65889560 C G BPTF Missense_Mutation p.I710M 0.05 benign(0.364) TCGA-55-8208-01 17 67266781 67266781 G C ABCA5 Missense_Mutation p.I1001M 0.05 deleterious(0) probably_damaging(1) TCGA-55-8208-01 17 74681173 74681173 C G MXRA7 Missense_Mutation p.E161Q 0.03 probably_damaging(0.969) TCGA-55-8208-01 17 7577114 7577114 C A TP53 Missense_Mutation p.C275F 0.18 deleterious(0) probably_damaging(0.983) TCGA-55-8208-01 17 77984537 77984537 C T TBC1D16 Missense_Mutation p.M67I 0.17 tolerated(0.43) benign(0.04) TCGA-55-8208-01 17 78280206 78280206 C T RNF213 Silent p.L789L 0.08 TCGA-55-8208-01 17 78318930 78318930 A G RNF213 Silent p.P2265P 0.05 TCGA-55-8208-01 17 7907385 7907385 C T GUCY2D Missense_Mutation p.R313C 0.16 deleterious(0.04) probably_damaging(0.964) TCGA-55-8208-01 18 21735969 21735969 C G CABYR Silent p.V168V 0.11 TCGA-55-8208-01 18 21739821 21739821 C T CABYR Silent p.T309T 0.08 TCGA-55-8208-01 18 47796068 47796068 G C MBD1 Silent p.L633L 0.13 TCGA-55-8208-01 18 56205400 56205400 G A ALPK2 Silent p.F673F 0.08 TCGA-55-8208-01 18 61232714 61232714 G A SERPINB12 Missense_Mutation p.G228S 0.05 deleterious(0.02) possibly_damaging(0.517) TCGA-55-8208-01 18 74639995 74639995 A G ZNF236 Silent p.A1507A 0.09 TCGA-55-8208-01 18 76757063 76757063 A G SALL3 Missense_Mutation p.Y1215C 0.07 deleterious(0) probably_damaging(0.999) TCGA-55-8208-01 19 10129492 10129492 C T RDH8 Silent p.F136F 0.22 TCGA-55-8208-01 19 10226703 10226703 G A EIF3G Missense_Mutation p.P215S 0.18 tolerated(0.05) possibly_damaging(0.664) TCGA-55-8208-01 19 10691954 10691954 C G AP1M2 Missense_Mutation p.E221Q 0.05 tolerated(0.08) benign(0.143) TCGA-55-8208-01 19 17337954 17337954 G C OCEL1 Missense_Mutation p.G133A 0.08 tolerated(0.28) benign(0.01) TCGA-55-8208-01 19 18331240 18331240 G C PDE4C Missense_Mutation p.H227Q 0.18 deleterious(0.03) benign(0.209) TCGA-55-8208-01 19 19458139 19458139 T C MAU2 Silent p.S424S 0.12 TCGA-55-8208-01 19 19746325 19746325 G C GMIP Missense_Mutation p.L487V 0.16 deleterious(0.02) benign(0.424) TCGA-55-8208-01 19 23845921 23845921 G C ZNF675 Missense_Mutation p.L15V 0.09 tolerated(0.1) possibly_damaging(0.874) TCGA-55-8208-01 19 3005721 3005721 G C TLE2 Silent p.V582V 0.05 TCGA-55-8208-01 19 36380881 36380881 G A NFKBID Silent p.L267L 0.07 TCGA-55-8208-01 19 3731984 3731984 C T TJP3 Missense_Mutation p.S231L 0.04 deleterious(0) possibly_damaging(0.586) TCGA-55-8208-01 19 38055907 38055907 C G ZNF571 Missense_Mutation p.E475Q 0.13 tolerated(0.07) benign(0.055) TCGA-55-8208-01 19 41285995 41285995 G A RAB4B Missense_Mutation p.E30K 0.13 tolerated(0.05) benign(0.055) TCGA-55-8208-01 19 41931472 41931472 C A B3GNT8 3'UTR 0.19 TCGA-55-8208-01 19 42388504 42388504 G C ARHGEF1 5'Flank 0.08 TCGA-55-8208-01 19 42853694 42853694 G A MEGF8 Missense_Mutation p.R714Q 0.07 tolerated(0.51) benign(0.41) TCGA-55-8208-01 19 4430546 4430546 G A CHAF1A Missense_Mutation p.D619N 0.10 deleterious(0.05) probably_damaging(0.997) TCGA-55-8208-01 19 47987338 47987338 T A KPTN Missense_Mutation p.N27I 0.08 deleterious(0) probably_damaging(0.994) TCGA-55-8208-01 19 48922951 48922951 C G GRIN2D Missense_Mutation p.I657M 0.11 deleterious(0.02) probably_damaging(0.995) TCGA-55-8208-01 19 48981331 48981331 C T CYTH2 Missense_Mutation p.R272W 0.10 deleterious(0) probably_damaging(0.937) TCGA-55-8208-01 19 55294937 55294937 G C KIR2DL1 Splice_Site p.X273_splice 0.08 TCGA-55-8208-01 19 55344186 55344186 T C KIR3DL1 3'Flank 0.20 TCGA-55-8208-01 19 56539823 56539823 G C NLRP5 Missense_Mutation p.G742R 0.14 tolerated(0.07) benign(0.025) TCGA-55-8208-01 19 56600279 56600279 G A ZNF787 Missense_Mutation p.H88Y 0.21 deleterious(0) probably_damaging(0.976) TCGA-55-8208-01 19 58966465 58966465 G A ZNF324B Intron 0.14 TCGA-55-8208-01 19 6750592 6750592 G A TRIP10 Silent p.E479E 0.13 TCGA-55-8208-01 19 7741979 7741979 G A C19orf59 Silent p.E4E 0.13 TCGA-55-8208-01 19 8196639 8196639 G A FBN3 Nonsense_Mutation p.Q597* 0.09 TCGA-55-8208-01 19 9087176 9087176 C T MUC16 Missense_Mutation p.V1547M 0.20 unknown(0) TCGA-55-8208-01 19 9204761 9204761 G A OR1M1 Missense_Mutation p.V281I 0.22 deleterious(0.05) probably_damaging(0.997) TCGA-55-8208-01 1 107691376 107691376 C A NTNG1 Missense_Mutation p.S54Y 0.10 deleterious(0.01) possibly_damaging(0.901) TCGA-55-8208-01 1 12820863 12820863 G A C1orf158 Silent p.L188L 0.22 TCGA-55-8208-01 1 152329424 152329424 A G FLG2 Missense_Mutation p.C280R 0.04 unknown(0) TCGA-55-8208-01 1 155630680 155630680 C T YY1AP1 Missense_Mutation p.E479K 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-55-8208-01 1 155747500 155747500 C G GON4L Missense_Mutation p.E668D 0.13 tolerated(0.07) probably_damaging(0.979) TCGA-55-8208-01 1 156618411 156618411 G A BCAN Missense_Mutation p.R274Q 0.12 tolerated(0.53) benign(0.029) TCGA-55-8208-01 1 157666151 157666151 G C FCRL3 Intron 0.07 TCGA-55-8208-01 1 158449978 158449978 A G OR10R2 Missense_Mutation p.N104S 0.05 tolerated(0.55) benign(0.347) TCGA-55-8208-01 1 158943456 158943456 G T PYHIN1 Missense_Mutation p.G460V 0.04 deleterious_low_confidence(0.04) probably_damaging(0.972) TCGA-55-8208-01 1 160261813 160261813 C G COPA Missense_Mutation p.E1055Q 0.16 tolerated(0.1) benign(0.311) TCGA-55-8208-01 1 160854633 160854633 G C ITLN1 Missense_Mutation p.A12G 0.11 tolerated(0.1) benign(0.323) TCGA-55-8208-01 1 167865893 167865893 C A ADCY10 Missense_Mutation p.D227Y 0.07 deleterious(0) probably_damaging(0.928) TCGA-55-8208-01 1 169519161 169519161 C T F5 Missense_Mutation p.D497N 0.10 deleterious(0.02) probably_damaging(0.956) TCGA-55-8208-01 1 169566259 169566259 T A SELP Nonsense_Mutation p.R621* 0.06 TCGA-55-8208-01 1 173930920 173930920 G A RC3H1 Silent p.I715I 0.05 TCGA-55-8208-01 1 17668513 17668513 G A PADI4 Missense_Mutation p.G243E 0.09 tolerated(0.05) probably_damaging(0.983) TCGA-55-8208-01 1 181680125 181680125 G A CACNA1E Missense_Mutation p.R364Q 0.10 deleterious(0) benign(0.238) TCGA-55-8208-01 1 183519058 183519058 G A SMG7 Missense_Mutation p.D999N 0.08 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-55-8208-01 1 185191114 185191114 A G SWT1 Missense_Mutation p.H752R 0.03 deleterious(0) possibly_damaging(0.848) TCGA-55-8208-01 1 186051996 186051996 G C HMCN1 Splice_Site p.X2930_splice 0.11 TCGA-55-8208-01 1 216243537 216243537 C T USH2A Silent p.E1985E 0.09 TCGA-55-8208-01 1 221913080 221913080 G A DUSP10 Missense_Mutation p.P3S 0.06 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-55-8208-01 1 223947007 223947007 C T CAPN2 Silent p.N451N 0.11 TCGA-55-8208-01 1 228346302 228346302 C G GJC2 Silent p.L281L 0.06 TCGA-55-8208-01 1 231885769 231885769 G - DISC1 Frame_Shift_Del p.G406Vfs*28 0.10 TCGA-55-8208-01 1 232943587 232943587 G A MAP10 Missense_Mutation p.D940N 0.07 tolerated(0.09) possibly_damaging(0.636) TCGA-55-8208-01 1 236925949 236925949 C T ACTN2 3'UTR 0.12 TCGA-55-8208-01 1 237870402 237870402 A C RYR2 Missense_Mutation p.Y3245S 0.11 probably_damaging(0.999) TCGA-55-8208-01 1 27101329 27101329 G A ARID1A Silent p.Q1537Q 0.10 TCGA-55-8208-01 1 27268057 27268057 G C NUDC Missense_Mutation p.R90T 0.18 deleterious(0.02) benign(0.045) TCGA-55-8208-01 1 32745315 32745315 G A LCK Silent p.L336L 0.06 TCGA-55-8208-01 1 33234319 33234319 G A KIAA1522 Missense_Mutation p.E177K 0.16 tolerated(0.09) unknown(0) TCGA-55-8208-01 1 33234321 33234321 G A KIAA1522 Silent p.E177E 0.15 TCGA-55-8208-01 1 3511960 3511960 G A MEGF6 Silent p.T106T 0.14 TCGA-55-8208-01 1 38397580 38397580 C G INPP5B Intron 0.07 TCGA-55-8208-01 1 40030416 40030416 A T PABPC4 Silent p.P425P 0.16 TCGA-55-8208-01 1 55136510 55136510 G T MROH7 Nonsense_Mutation p.E503* 0.06 TCGA-55-8208-01 1 57169915 57169915 G T PRKAA2 Missense_Mutation p.D354Y 0.14 tolerated(0.13) possibly_damaging(0.886) TCGA-55-8208-01 1 57499219 57499219 C T DAB1 Intron 0.05 TCGA-55-8208-01 1 6525227 6525227 C T TNFRSF25 Silent p.V72V 0.13 TCGA-55-8208-01 1 75622664 75622664 C A LHX8 Silent p.P299P 0.08 TCGA-55-8208-01 1 7724188 7724188 C T CAMTA1 Silent p.V527V 0.14 TCGA-55-8208-01 1 905764 905764 G - PLEKHN1 Frame_Shift_Del p.H98Ifs*45 0.09 TCGA-55-8208-01 20 1905435 1905435 C T SIRPA Silent p.N371N 0.04 TCGA-55-8208-01 20 25596908 25596908 C G NANP Missense_Mutation p.D134H 0.05 tolerated(0.09) possibly_damaging(0.856) TCGA-55-8208-01 20 32848259 32848259 G A ASIP Missense_Mutation p.E27K 0.04 deleterious(0.02) benign(0.069) TCGA-55-8208-01 20 35060109 35060109 C T DLGAP4 5'UTR 0.08 TCGA-55-8208-01 20 36937422 36937422 C G BPI Missense_Mutation p.I116M 0.14 deleterious(0.02) benign(0.391) TCGA-55-8208-01 20 37353396 37353396 C - SLC32A1 Frame_Shift_Del p.N11Tfs*14 0.20 TCGA-55-8208-01 20 37356874 37356874 G T SLC32A1 Silent p.A390A 0.14 TCGA-55-8208-01 20 43739334 43739334 G T WFDC5 Silent p.P56P 0.13 TCGA-55-8208-01 20 43739335 43739335 G T WFDC5 Missense_Mutation p.P56H 0.14 deleterious(0) probably_damaging(1) TCGA-55-8208-01 20 43752760 43752760 C T WFDC12 Missense_Mutation p.E76K 0.06 tolerated(0.89) benign(0) TCGA-55-8208-01 20 45131250 45131250 C G ZNF334 Missense_Mutation p.R243T 0.08 tolerated(0.21) benign(0.118) TCGA-55-8208-01 20 47989810 47989810 C G KCNB1 Missense_Mutation p.E763Q 0.03 tolerated_low_confidence(0.06) possibly_damaging(0.827) TCGA-55-8208-01 20 57767499 57767499 G A ZNF831 Silent p.T475T 0.08 TCGA-55-8208-01 20 61528308 61528308 G A DIDO1 Silent p.A543A 0.07 TCGA-55-8208-01 20 61528310 61528310 C A DIDO1 Missense_Mutation p.A543S 0.06 benign(0.164) TCGA-55-8208-01 21 28305263 28305263 G T ADAMTS5 Missense_Mutation p.P597H 0.08 deleterious(0) probably_damaging(1) TCGA-55-8208-01 21 45950975 45950975 C G TSPEAR Missense_Mutation p.G195A 0.05 deleterious(0.05) benign(0.266) TCGA-55-8208-01 22 16287423 16287423 C A POTEH Missense_Mutation p.G155C 0.09 deleterious(0) probably_damaging(0.928) TCGA-55-8208-01 22 18171845 18171845 G A BCL2L13 Missense_Mutation p.G108E 0.05 deleterious(0) probably_damaging(0.936) TCGA-55-8208-01 22 19035956 19035956 G A DGCR2 Missense_Mutation p.P335S 0.14 deleterious(0.05) probably_damaging(0.971) TCGA-55-8208-01 22 22277491 22277491 C G PPM1F Missense_Mutation p.E447Q 0.16 tolerated_low_confidence(0.31) benign(0.011) TCGA-55-8208-01 22 22890898 22890898 T C PRAME Missense_Mutation p.E374G 0.20 deleterious(0.01) probably_damaging(0.986) TCGA-55-8208-01 22 23974230 23974230 C T C22orf43 5'UTR 0.07 TCGA-55-8208-01 22 27008033 27008033 C G CRYBB1 Intron 0.08 TCGA-55-8208-01 22 30953305 30953305 G A GAL3ST1 Silent p.F25F 0.09 TCGA-55-8208-01 22 39427766 39427766 C T APOBEC3D Missense_Mutation p.S277F 0.11 deleterious(0) benign(0.365) TCGA-55-8208-01 22 42150015 42150015 C T MEI1 Missense_Mutation p.S639L 0.07 tolerated(0.12) probably_damaging(0.99) TCGA-55-8208-01 2 109382286 109382286 C T RANBP2 Missense_Mutation p.S1764F 0.04 tolerated_low_confidence(0.22) benign(0.002) TCGA-55-8208-01 2 112786015 112786015 A C MERTK Missense_Mutation p.L858F 0.09 deleterious(0) possibly_damaging(0.736) TCGA-55-8208-01 2 128367449 128367449 T A MYO7B Missense_Mutation p.I1017N 0.08 deleterious(0) probably_damaging(0.999) TCGA-55-8208-01 2 128466269 128466269 C T WDR33 Missense_Mutation p.E1255K 0.04 deleterious_low_confidence(0.01) benign(0.176) TCGA-55-8208-01 2 130952701 130952701 G T TUBA3E Missense_Mutation p.T109N 0.06 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-55-8208-01 2 136566232 136566232 C T LCT Missense_Mutation p.D1229N 0.05 deleterious(0) probably_damaging(0.999) TCGA-55-8208-01 2 155555733 155555733 G C KCNJ3 Missense_Mutation p.R149P 0.05 deleterious(0) probably_damaging(0.999) TCGA-55-8208-01 2 157183425 157183425 G A NR4A2 Missense_Mutation p.A389V 0.04 tolerated(0.2) benign(0.069) TCGA-55-8208-01 2 160027277 160027277 A G TANC1 Missense_Mutation p.R438G 0.07 tolerated(0.05) probably_damaging(0.998) TCGA-55-8208-01 2 162895681 162895681 G A DPP4 Missense_Mutation p.S127F 0.05 deleterious(0) probably_damaging(1) TCGA-55-8208-01 2 163292018 163292018 G A KCNH7 Silent p.G548G 0.08 TCGA-55-8208-01 2 166897831 166897831 G T SCN1A Silent p.T775T 0.04 TCGA-55-8208-01 2 168099959 168099959 G T XIRP2 Missense_Mutation p.G686V 0.07 probably_damaging(0.992) TCGA-55-8208-01 2 179597671 179597671 G T TTN Missense_Mutation p.T5411K 0.08 TCGA-55-8208-01 2 179616222 179616222 C T TTN Intron 0.06 TCGA-55-8208-01 2 179989093 179989093 C A SESTD1 Missense_Mutation p.D389Y 0.10 deleterious(0.02) possibly_damaging(0.564) TCGA-55-8208-01 2 180308037 180308037 C G ZNF385B Silent p.L452L 0.10 TCGA-55-8208-01 2 190606095 190606095 C G ANKAR Missense_Mutation p.S1243C 0.10 tolerated(0.06) benign(0.013) TCGA-55-8208-01 2 197184551 197184551 C T HECW2 Missense_Mutation p.E355K 0.11 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-55-8208-01 2 216191701 216191701 G A ATIC Missense_Mutation p.V230I 0.08 tolerated(0.07) benign(0.132) TCGA-55-8208-01 2 216903994 216903994 C G PECR 3'UTR 0.05 TCGA-55-8208-01 2 219549951 219549951 G C STK36 Missense_Mutation p.Q460H 0.04 deleterious(0) probably_damaging(0.993) TCGA-55-8208-01 2 230723591 230723591 G A TRIP12 Silent p.F266F 0.09 TCGA-55-8208-01 2 231367814 231367814 G C SP100 Missense_Mutation p.R585T 0.07 tolerated(0.29) benign(0.402) TCGA-55-8208-01 2 26696276 26696276 C T OTOF Missense_Mutation p.V1190M 0.20 deleterious(0.03) probably_damaging(1) TCGA-55-8208-01 2 27715647 27715647 C A FNDC4 Silent p.G185G 0.04 TCGA-55-8208-01 2 32875249 32875249 G T TTC27 Nonsense_Mutation p.E197* 0.10 TCGA-55-8208-01 2 33468818 33468818 T C LTBP1 Missense_Mutation p.F656L 0.13 deleterious(0.01) possibly_damaging(0.734) TCGA-55-8208-01 2 37217922 37217922 C G HEATR5B Missense_Mutation p.D1856H 0.05 deleterious(0) probably_damaging(0.998) TCGA-55-8208-01 2 46211689 46211689 G T PRKCE Splice_Site p.X232_splice 0.12 TCGA-55-8208-01 2 46211690 46211690 G T PRKCE Missense_Mutation p.V232L 0.12 tolerated(0.72) benign(0.005) TCGA-55-8208-01 2 68384648 68384648 C G WDR92 5'UTR 0.10 TCGA-55-8208-01 2 69204666 69204666 G T GKN1 Missense_Mutation p.A32S 0.07 tolerated(0.35) benign(0.038) TCGA-55-8208-01 2 90121977 90121977 C A IGKV1D-17 Silent p.V65V 0.15 TCGA-55-8208-01 2 96947610 96947610 C A SNRNP200 Missense_Mutation p.V1656L 0.05 tolerated(1) benign(0.007) TCGA-55-8208-01 2 9725422 9725422 T C YWHAQ Missense_Mutation p.E244G 0.16 deleterious_low_confidence(0.03) unknown(0) TCGA-55-8208-01 3 108474669 108474669 T C RETNLB Missense_Mutation p.S98G 0.03 tolerated(0.07) benign(0.338) TCGA-55-8208-01 3 108474670 108474670 G T RETNLB Nonsense_Mutation p.C97* 0.03 TCGA-55-8208-01 3 11350491 11350491 G C ATG7 Missense_Mutation p.E123Q 0.04 tolerated(0.14) benign(0.01) TCGA-55-8208-01 3 119156627 119156627 G T TMEM39A Missense_Mutation p.A300E 0.06 deleterious(0) probably_damaging(0.993) TCGA-55-8208-01 3 120673850 120673850 T G STXBP5L Missense_Mutation p.L85V 0.20 deleterious(0.02) probably_damaging(0.992) TCGA-55-8208-01 3 132360854 132360854 C T ACAD11 Missense_Mutation p.E167K 0.07 tolerated(0.17) benign(0.021) TCGA-55-8208-01 3 132416116 132416116 C T NPHP3 Silent p.L692L 0.05 TCGA-55-8208-01 3 133667450 133667450 G A SLCO2A1 Silent p.L345L 0.05 TCGA-55-8208-01 3 134278066 134278066 G T CEP63 Missense_Mutation p.G583V 0.07 tolerated(0.14) benign(0.113) TCGA-55-8208-01 3 134960099 134960099 C A EPHB1 Nonsense_Mutation p.S819* 0.12 TCGA-55-8208-01 3 136196147 136196147 C A STAG1 Missense_Mutation p.W337L 0.09 deleterious(0) probably_damaging(0.931) TCGA-55-8208-01 3 139069846 139069846 G A MRPS22 Missense_Mutation p.D226N 0.06 tolerated(0.15) possibly_damaging(0.734) TCGA-55-8208-01 3 148552384 148552384 C G CPB1 Missense_Mutation p.L83V 0.06 deleterious(0.01) benign(0.393) TCGA-55-8208-01 3 167277909 167277909 C G WDR49 Missense_Mutation p.M198I 0.17 deleterious(0.01) possibly_damaging(0.735) TCGA-55-8208-01 3 169802440 169802440 C T GPR160 Missense_Mutation p.S227L 0.11 tolerated(0.28) benign(0.006) TCGA-55-8208-01 3 171330202 171330202 G A PLD1 Missense_Mutation p.R917C 0.08 deleterious(0) probably_damaging(0.999) TCGA-55-8208-01 3 183818338 183818338 C T HTR3E Silent p.L60L 0.05 TCGA-55-8208-01 3 184633201 184633201 A G VPS8 Missense_Mutation p.Y774C 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-55-8208-01 3 194080498 194080498 C A LRRC15 Missense_Mutation p.W431C 0.05 deleterious(0) probably_damaging(0.998) TCGA-55-8208-01 3 194392910 194392910 C A LSG1 5'UTR 0.15 TCGA-55-8208-01 3 196678780 196678780 G C PIGZ Silent p.L41L 0.11 TCGA-55-8208-01 3 19974937 19974937 C A EFHB Missense_Mutation p.V192L 0.15 tolerated_low_confidence(0.06) benign(0.082) TCGA-55-8208-01 3 32031418 32031418 G A ZNF860 Missense_Mutation p.E283K 0.04 deleterious(0.03) benign(0.067) TCGA-55-8208-01 3 33905578 33905578 G A PDCD6IP Missense_Mutation p.G739E 0.04 tolerated(0.11) possibly_damaging(0.701) TCGA-55-8208-01 3 58870330 58870330 G A C3orf67 Missense_Mutation p.T94I 0.04 deleterious(0.01) probably_damaging(0.984) TCGA-55-8208-01 3 98216889 98216889 G A OR5K2 Missense_Mutation p.R122H 0.11 deleterious(0.01) benign(0.236) TCGA-55-8208-01 3 98217377 98217377 C A OR5K2 Missense_Mutation p.L285I 0.08 deleterious(0.01) possibly_damaging(0.45) TCGA-55-8208-01 4 114279530 114279530 A G ANK2 Silent p.V3252V 0.09 TCGA-55-8208-01 4 142653990 142653990 A G IL15 Missense_Mutation p.N160D 0.06 tolerated_low_confidence(0.07) possibly_damaging(0.467) TCGA-55-8208-01 4 151388914 151388914 G A LRBA Nonsense_Mutation p.Q2242* 0.05 TCGA-55-8208-01 4 162307339 162307339 C G FSTL5 Missense_Mutation p.D702H 0.08 deleterious(0) probably_damaging(0.996) TCGA-55-8208-01 4 48514581 48514581 G A FRYL Missense_Mutation p.R2688C 0.10 deleterious(0) probably_damaging(0.998) TCGA-55-8208-01 4 89577183 89577183 G T HERC3 Missense_Mutation p.A356S 0.14 tolerated(0.78) benign(0.019) TCGA-55-8208-01 4 9783791 9783791 G A DRD5 Silent p.L46L 0.09 TCGA-55-8208-01 5 10417474 10417474 G A MARCH6 Silent p.L747L 0.05 TCGA-55-8208-01 5 131042117 131042117 C A FNIP1 Missense_Mutation p.V301L 0.10 tolerated(0.13) probably_damaging(0.995) TCGA-55-8208-01 5 137230183 137230183 C A PKD2L2 Missense_Mutation p.R137S 0.11 deleterious(0.01) possibly_damaging(0.905) TCGA-55-8208-01 5 140167315 140167315 G A PCDHA1 Silent p.R480R 0.12 TCGA-55-8208-01 5 140516240 140516240 G C PCDHB5 Silent p.L408L 0.12 TCGA-55-8208-01 5 140559009 140559009 A G PCDHB8 Missense_Mutation p.N465S 0.03 deleterious_low_confidence(0.01) possibly_damaging(0.567) TCGA-55-8208-01 5 140744136 140744136 G A PCDHGA5 Missense_Mutation p.R80Q 0.04 deleterious_low_confidence(0.04) benign(0.292) TCGA-55-8208-01 5 140753930 140753930 G A PCDHGA6 Missense_Mutation p.E94K 0.06 deleterious_low_confidence(0.01) benign(0.279) TCGA-55-8208-01 5 142680274 142680274 G C NR3C1 Nonsense_Mutation p.S509* 0.10 TCGA-55-8208-01 5 161324338 161324338 C A GABRA1 Missense_Mutation p.F427L 0.10 deleterious(0) probably_damaging(0.973) TCGA-55-8208-01 5 161580356 161580356 C G GABRG2 Silent p.V510V 0.07 TCGA-55-8208-01 5 16463718 16463718 G C ZNF622 Missense_Mutation p.D253E 0.03 tolerated(0.15) benign(0.215) TCGA-55-8208-01 5 173376510 173376510 G T CPEB4 Splice_Site p.X486_splice 0.11 TCGA-55-8208-01 5 176011607 176011607 C A CDHR2 Missense_Mutation p.N775K 0.17 tolerated(0.11) benign(0.232) TCGA-55-8208-01 5 19503101 19503101 C A CDH18 Missense_Mutation p.D544Y 0.07 deleterious(0) probably_damaging(1) TCGA-55-8208-01 5 39341331 39341331 C T C9 Silent p.E131E 0.13 TCGA-55-8208-01 5 57790659 57790659 G T GAPT Missense_Mutation p.G99V 0.10 tolerated(0.11) possibly_damaging(0.705) TCGA-55-8208-01 5 63510304 63510304 G C RNF180 Missense_Mutation p.R384T 0.12 deleterious(0) possibly_damaging(0.587) TCGA-55-8208-01 5 66480251 66480251 G A CD180 Silent p.L140L 0.03 TCGA-55-8208-01 5 79732653 79732653 C T ZFYVE16 Missense_Mutation p.S50L 0.05 tolerated(0.13) benign(0.038) TCGA-55-8208-01 5 90669589 90669589 G A ARRDC3 Missense_Mutation p.A367V 0.14 tolerated(0.3) benign(0) TCGA-55-8208-01 5 90669590 90669590 C A ARRDC3 Missense_Mutation p.A367S 0.14 tolerated(0.73) benign(0.001) TCGA-55-8208-01 6 10775564 10775564 C T MAK Missense_Mutation p.A532T 0.07 tolerated(0.27) benign(0.003) TCGA-55-8208-01 6 109771173 109771173 C G MICAL1 Missense_Mutation p.R436P 0.04 deleterious(0) probably_damaging(0.999) TCGA-55-8208-01 6 116446631 116446631 G A COL10A1 Silent p.L9L 0.13 TCGA-55-8208-01 6 127611066 127611066 C T ECHDC1 Missense_Mutation p.G291D 0.12 deleterious(0) probably_damaging(0.981) TCGA-55-8208-01 6 142741159 142741159 G A GPR126 Missense_Mutation p.M1079I 0.04 deleterious(0.01) probably_damaging(0.997) TCGA-55-8208-01 6 17626174 17626174 G C NUP153 Missense_Mutation p.Q1256E 0.06 deleterious(0.01) benign(0.22) TCGA-55-8208-01 6 20481576 20481576 G C E2F3 Missense_Mutation p.K215N 0.08 deleterious(0) probably_damaging(0.998) TCGA-55-8208-01 6 29141999 29141999 A G OR2J2 Missense_Mutation p.N196S 0.06 deleterious(0.02) benign(0.205) TCGA-55-8208-01 6 3273202 3273202 C T SLC22A23 3'UTR 0.06 TCGA-55-8208-01 6 33263949 33263949 G A RGL2 Silent p.I208I 0.09 TCGA-55-8208-01 6 36182093 36182093 G A BRPF3 Silent p.R973R 0.08 TCGA-55-8208-01 6 36182121 36182121 G A BRPF3 Missense_Mutation p.E983K 0.08 deleterious(0.05) benign(0.002) TCGA-55-8208-01 6 36182135 36182135 G A BRPF3 Silent p.E987E 0.09 TCGA-55-8208-01 6 38690880 38690880 G C DNAH8 5'Flank 0.05 TCGA-55-8208-01 6 44226978 44226978 T G NFKBIE Missense_Mutation p.K494T 0.06 deleterious(0) possibly_damaging(0.835) TCGA-55-8208-01 6 44900419 44900419 G A SUPT3H Missense_Mutation p.H306Y 0.07 tolerated(1) benign(0.006) TCGA-55-8208-01 6 46659259 46659259 G C TDRD6 Missense_Mutation p.D1132H 0.05 deleterious(0.02) benign(0.062) TCGA-55-8208-01 6 7601649 7601649 G T SNRNP48 Missense_Mutation p.A163S 0.08 deleterious(0) probably_damaging(0.946) TCGA-55-8208-01 6 76660473 76660473 C A IMPG1 Missense_Mutation p.D544Y 0.10 tolerated(0.06) possibly_damaging(0.733) TCGA-55-8208-01 6 88385643 88385643 T C AKIRIN2 Missense_Mutation p.Y179C 0.05 deleterious(0) probably_damaging(0.999) TCGA-55-8208-01 6 88854980 88854980 A G CNR1 Missense_Mutation p.L5P 0.12 deleterious_low_confidence(0) possibly_damaging(0.83) TCGA-55-8208-01 6 89808333 89808333 G A SRSF12 Silent p.S250S 0.09 TCGA-55-8208-01 6 90394627 90394627 C G MDN1 Missense_Mutation p.E3933Q 0.09 benign(0.147) TCGA-55-8208-01 6 96985297 96985297 A G UFL1 Missense_Mutation p.I284V 0.12 tolerated(0.25) benign(0.026) TCGA-55-8208-01 7 100086359 100086359 G T NYAP1 Missense_Mutation p.A339S 0.16 deleterious(0.04) possibly_damaging(0.879) TCGA-55-8208-01 7 120767273 120767273 G C CPED1 Missense_Mutation p.E422Q 0.06 deleterious(0) possibly_damaging(0.691) TCGA-55-8208-01 7 122261580 122261580 C T CADPS2 Silent p.E353E 0.11 TCGA-55-8208-01 7 123256508 123256508 T A ASB15 Missense_Mutation p.V84D 0.14 deleterious(0) benign(0.102) TCGA-55-8208-01 7 123594167 123594167 C G SPAM1 Silent p.L181L 0.04 TCGA-55-8208-01 7 141756709 141756709 G C MGAM Silent p.P1220P 0.04 TCGA-55-8208-01 7 154751611 154751611 C T PAXIP1 Missense_Mutation p.E823K 0.04 deleterious(0) unknown(0) TCGA-55-8208-01 7 24738725 24738725 G A DFNA5 Silent p.L471L 0.06 TCGA-55-8208-01 7 24738823 24738823 G T DFNA5 Missense_Mutation p.P438H 0.09 deleterious(0.01) probably_damaging(0.968) TCGA-55-8208-01 7 30085957 30085957 G A PLEKHA8 Missense_Mutation p.D97N 0.07 tolerated(0.29) benign(0.252) TCGA-55-8208-01 7 35872416 35872416 G T SEPT7 Missense_Mutation p.K26N 0.04 deleterious(0.05) probably_damaging(0.945) TCGA-55-8208-01 7 36423524 36423524 G C KIAA0895 Missense_Mutation p.P41R 0.05 tolerated_low_confidence(0.18) benign(0.02) TCGA-55-8208-01 7 55980381 55980381 G C MRPS17 Missense_Mutation p.E5Q 0.08 tolerated_low_confidence(0.12) unknown(0) TCGA-55-8208-01 7 66463094 66463094 C T TYW1 Missense_Mutation p.S16L 0.04 tolerated_low_confidence(0.25) benign(0.002) TCGA-55-8208-01 7 82544970 82544970 T A PCLO Missense_Mutation p.E4111V 0.08 unknown(0) TCGA-55-8208-01 7 99802330 99802330 C A STAG3 Silent p.A961A 0.06 TCGA-55-8208-01 8 100733168 100733168 A T VPS13B Nonsense_Mutation p.R2340* 0.04 TCGA-55-8208-01 8 101252649 101252649 G T SPAG1 Nonsense_Mutation p.E767* 0.06 TCGA-55-8208-01 8 113304897 113304897 G T CSMD3 Missense_Mutation p.T2886K 0.03 deleterious(0) possibly_damaging(0.59) TCGA-55-8208-01 8 113697914 113697914 G C CSMD3 Missense_Mutation p.P735A 0.04 deleterious(0) probably_damaging(1) TCGA-55-8208-01 8 139733012 139733012 T C COL22A1 Silent p.E775E 0.08 TCGA-55-8208-01 8 144241623 144241623 G A LY6H 5'UTR 0.07 TCGA-55-8208-01 8 144732010 144732010 C G ZNF623 5'UTR 0.05 TCGA-55-8208-01 8 146279402 146279402 A T C8orf33 Splice_Site p.X184_splice 0.05 TCGA-55-8208-01 8 17731978 17731978 G C FGL1 Missense_Mutation p.I99M 0.03 tolerated(0.07) possibly_damaging(0.544) TCGA-55-8208-01 8 18662353 18662353 C T PSD3 Missense_Mutation p.E564K 0.05 tolerated(0.05) benign(0.088) TCGA-55-8208-01 8 2088663 2088663 C G MYOM2 Missense_Mutation p.S1273C 0.04 tolerated(0.16) probably_damaging(0.998) TCGA-55-8208-01 8 30705282 30705282 T C TEX15 Missense_Mutation p.R418G 0.05 tolerated(0.37) benign(0.009) TCGA-55-8208-01 8 41545684 41545684 G C ANK1 Silent p.L1457L 0.04 TCGA-55-8208-01 8 48771477 48771477 C G PRKDC Missense_Mutation p.C2092S 0.09 possibly_damaging(0.897) TCGA-55-8208-01 8 86250676 86250676 G T CA1 Missense_Mutation p.P14T 0.07 deleterious(0) probably_damaging(0.919) TCGA-55-8208-01 8 87241845 87241845 C A SLC7A13 Missense_Mutation p.G221V 0.07 tolerated(0.3) possibly_damaging(0.69) TCGA-55-8208-01 8 87241846 87241846 C A SLC7A13 Missense_Mutation p.G221W 0.07 tolerated(0.2) benign(0.052) TCGA-55-8208-01 8 95942613 95942613 G C TP53INP1 3'UTR 0.10 TCGA-55-8208-01 8 9609212 9609212 C G TNKS Missense_Mutation p.L976V 0.06 tolerated(0.7) benign(0.001) TCGA-55-8208-01 8 99019794 99019794 G T MATN2 Missense_Mutation p.G513V 0.05 deleterious(0) probably_damaging(0.915) TCGA-55-8208-01 9 107379942 107379942 G C OR13C9 Missense_Mutation p.L182V 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-55-8208-01 9 109689006 109689006 G C ZNF462 Missense_Mutation p.R938T 0.06 probably_damaging(0.997) TCGA-55-8208-01 9 127790721 127790721 C A SCAI Missense_Mutation p.W144C 0.14 tolerated(0.07) probably_damaging(0.997) TCGA-55-8208-01 9 130502579 130502579 T A SH2D3C Nonsense_Mutation p.K720* 0.10 TCGA-55-8208-01 9 15175033 15175033 A C TTC39B Missense_Mutation p.F648V 0.11 tolerated(0.51) benign(0.002) TCGA-55-8208-01 9 15468718 15468718 G C PSIP1 Missense_Mutation p.L444V 0.08 tolerated(0.07) probably_damaging(0.992) TCGA-55-8208-01 9 27202996 27202996 G A TEK Silent p.Q696Q 0.06 TCGA-55-8208-01 9 4663265 4663265 A G PPAPDC2 3'UTR 0.08 TCGA-55-8208-01 9 72933456 72933456 G A SMC5 Silent p.Q611Q 0.06 TCGA-55-8208-01 9 730149 730149 G A KANK1 Missense_Mutation p.E933K 0.10 tolerated(0.27) benign(0.002) TCGA-55-8208-01 9 8317814 8317814 G A PTPRD 3'UTR 0.04 TCGA-55-8208-01 9 94519635 94519635 T C ROR2 Missense_Mutation p.T128A 0.12 tolerated(0.12) possibly_damaging(0.826) TCGA-55-8208-01 9 95609375 95609375 G C ZNF484 Nonsense_Mutation p.S567* 0.04 TCGA-55-8208-01 X 100496767 100496767 C A DRP2 Missense_Mutation p.R224S 0.05 tolerated(0.13) probably_damaging(0.99) TCGA-55-8208-01 X 100608222 100608222 G T BTK Nonsense_Mutation p.S623* 0.03 TCGA-55-8208-01 X 103041593 103041593 C G PLP1 Missense_Mutation p.Q131E 0.03 tolerated_low_confidence(1) benign(0.004) TCGA-55-8208-01 X 109694075 109694075 C T RGAG1 Missense_Mutation p.P77L 0.06 tolerated_low_confidence(0.19) possibly_damaging(0.804) TCGA-55-8208-01 X 109697114 109697114 G A RGAG1 Missense_Mutation p.G1090E 0.09 tolerated(0.15) probably_damaging(0.951) TCGA-55-8208-01 X 109697858 109697858 G C RGAG1 Missense_Mutation p.G1338A 0.06 deleterious_low_confidence(0.01) benign(0.003) TCGA-55-8208-01 X 11139773 11139773 G A HCCS Missense_Mutation p.R217H 0.04 deleterious(0) probably_damaging(0.998) TCGA-55-8208-01 X 11316820 11316820 A T AMELX Silent p.P113P 0.06 TCGA-55-8208-01 X 118147113 118147113 C A LONRF3 Missense_Mutation p.S641R 0.08 tolerated(0.35) possibly_damaging(0.723) TCGA-55-8208-01 X 119505047 119505047 C A ATP1B4 Missense_Mutation p.L182I 0.07 deleterious(0.01) possibly_damaging(0.759) TCGA-55-8208-01 X 122760370 122760370 A G THOC2 Splice_Site p.X967_splice 0.06 TCGA-55-8208-01 X 123517902 123517902 G C TENM1 Missense_Mutation p.H2293Q 0.06 deleterious(0.01) possibly_damaging(0.671) TCGA-55-8208-01 X 125298753 125298753 C T DCAF12L2 Silent p.E385E 0.05 TCGA-55-8208-01 X 134030923 134030923 T C MOSPD1 Silent p.Q124Q 0.03 TCGA-55-8208-01 X 134186109 134186109 G T FAM127B Silent p.A10A 0.07 TCGA-55-8208-01 X 140996387 140996387 G T MAGEC1 Missense_Mutation p.R1066L 0.07 deleterious(0.03) unknown(0) TCGA-55-8208-01 X 142718131 142718131 C A SLITRK4 Missense_Mutation p.G265V 0.17 deleterious(0.05) probably_damaging(0.999) TCGA-55-8208-01 X 153047240 153047240 G T SRPK3 Silent p.G114G 0.05 TCGA-55-8208-01 X 153539220 153539220 G T TKTL1 Missense_Mutation p.E128D 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-55-8208-01 X 17768271 17768271 C G SCML1 Missense_Mutation p.F187L 0.05 tolerated(0.14) benign(0.022) TCGA-55-8208-01 X 21488894 21488894 T C CNKSR2 Missense_Mutation p.V177A 0.05 deleterious(0) possibly_damaging(0.512) TCGA-55-8208-01 X 31526384 31526384 G A DMD Intron 0.09 TCGA-55-8208-01 X 32235119 32235119 G A DMD Nonsense_Mutation p.Q2118* 0.07 TCGA-55-8208-01 X 46322197 46322197 C G KRBOX4 Missense_Mutation p.F10L 0.05 tolerated(0.06) probably_damaging(0.999) TCGA-55-8208-01 X 48919856 48919856 G A CCDC120 Missense_Mutation p.A17T 0.10 tolerated_low_confidence(0.06) probably_damaging(0.93) TCGA-55-8208-01 X 54020143 54020143 C A PHF8 Missense_Mutation p.R542L 0.09 deleterious(0.01) benign(0.044) TCGA-55-8208-01 X 65242164 65242164 G T VSIG4 Missense_Mutation p.L381M 0.10 deleterious(0.03) benign(0.123) TCGA-55-8208-01 X 70342952 70342952 C G MED12 Nonsense_Mutation p.S498* 0.08 TCGA-55-8208-01 X 70357730 70357730 G T MED12 Missense_Mutation p.R1994L 0.12 probably_damaging(0.944) TCGA-55-8208-01 X 75003736 75003736 G A MAGEE2 Missense_Mutation p.P384L 0.06 tolerated(0.34) probably_damaging(0.999) TCGA-55-8208-01 X 77302016 77302016 G T ATP7A Missense_Mutation p.K1484N 0.08 deleterious(0) probably_damaging(0.999) TCGA-55-8208-01 X 78426678 78426678 G T GPR174 Missense_Mutation p.M58I 0.14 deleterious(0.03) probably_damaging(0.974) TCGA-55-8299-01 10 127806660 127806660 T A ADAM12 Missense_Mutation p.N187Y 0.03 tolerated(0.06) benign(0.002) TCGA-55-8299-01 10 15714727 15714727 A T ITGA8 Missense_Mutation p.V233D 0.05 deleterious(0.01) benign(0.398) TCGA-55-8299-01 10 16930566 16930566 C T CUBN Splice_Site p.X2919_splice 0.08 TCGA-55-8299-01 10 17750775 17750775 G T STAM Missense_Mutation p.V404L 0.05 tolerated(0.71) benign(0.014) TCGA-55-8299-01 10 26243912 26243912 G C MYO3A Missense_Mutation p.G93A 0.06 deleterious(0.01) probably_damaging(0.909) TCGA-55-8299-01 10 38127039 38127039 C A ZNF248 Nonsense_Mutation p.E6* 0.04 TCGA-55-8299-01 10 69648737 69648737 G A SIRT1 Silent p.L215L 0.05 TCGA-55-8299-01 10 69991035 69991035 C T ATOH7 Missense_Mutation p.E134K 0.08 deleterious(0.01) possibly_damaging(0.669) TCGA-55-8299-01 10 88123744 88123744 G T GRID1 Silent p.S63S 0.04 TCGA-55-8299-01 10 88418262 88418262 G T OPN4 Missense_Mutation p.C160F 0.07 deleterious(0.01) benign(0.159) TCGA-55-8299-01 10 94834799 94834799 C A CYP26A1 Silent p.I226I 0.12 TCGA-55-8299-01 10 95399926 95399926 C G PDE6C Missense_Mutation p.L528V 0.05 deleterious(0.01) benign(0.133) TCGA-55-8299-01 11 103907619 103907619 C A PDGFD Intron 0.10 TCGA-55-8299-01 11 123813939 123813939 A G OR6T1 Missense_Mutation p.S203P 0.04 deleterious(0) probably_damaging(0.995) TCGA-55-8299-01 11 123847628 123847628 G T OR10S1 Silent p.A257A 0.11 TCGA-55-8299-01 11 125267908 125267908 C A PKNOX2 Missense_Mutation p.L180I 0.07 tolerated(0.44) benign(0.186) TCGA-55-8299-01 11 17794195 17794195 C A KCNC1 Intron 0.04 TCGA-55-8299-01 11 22363194 22363194 C A SLC17A6 Silent p.R69R 0.06 TCGA-55-8299-01 11 22363195 22363195 C A SLC17A6 Missense_Mutation p.R70S 0.07 deleterious(0.02) probably_damaging(0.96) TCGA-55-8299-01 11 30032868 30032868 C A KCNA4 Missense_Mutation p.R453L 0.06 deleterious(0) probably_damaging(1) TCGA-55-8299-01 11 30032903 30032903 G T KCNA4 Silent p.A441A 0.07 TCGA-55-8299-01 11 30032904 30032904 G T KCNA4 Missense_Mutation p.A441D 0.07 deleterious(0) probably_damaging(0.998) TCGA-55-8299-01 11 4936782 4936782 A T OR51G2 Missense_Mutation p.F38I 0.04 tolerated(0.31) benign(0.04) TCGA-55-8299-01 11 49974148 49974148 C G OR4C13 Nonsense_Mutation p.Y58* 0.04 TCGA-55-8299-01 11 50003969 50003969 T A OR4C12 Missense_Mutation p.K23N 0.06 deleterious_low_confidence(0.03) benign(0.016) TCGA-55-8299-01 11 5411020 5411020 C A OR51M1 Missense_Mutation p.S131Y 0.05 deleterious(0) probably_damaging(0.987) TCGA-55-8299-01 11 5411021 5411021 C A OR51M1 Silent p.S131S 0.05 TCGA-55-8299-01 11 55587946 55587946 G T OR5D18 Missense_Mutation p.V281L 0.06 deleterious(0.04) benign(0.047) TCGA-55-8299-01 11 56085826 56085826 C A OR8K3 Missense_Mutation p.T15K 0.06 deleterious_low_confidence(0.05) benign(0.005) TCGA-55-8299-01 11 58746750 58746750 G T RP11-142C4.6 RNA 0.13 TCGA-55-8299-01 11 59190251 59190251 G T OR5A2 Missense_Mutation p.P59H 0.09 deleterious(0) probably_damaging(1) TCGA-55-8299-01 11 59629097 59629097 G T TCN1 Silent p.A153A 0.09 TCGA-55-8299-01 11 65561549 65561549 T A OVOL1 Missense_Mutation p.S50T 0.08 tolerated(0.13) benign(0.169) TCGA-55-8299-01 11 92531937 92531937 T A FAT3 Missense_Mutation p.Y1920N 0.06 possibly_damaging(0.903) TCGA-55-8299-01 12 101430894 101430894 A G ANO4 Missense_Mutation p.N253S 0.05 tolerated(0.65) possibly_damaging(0.792) TCGA-55-8299-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.10 deleterious(0.04) probably_damaging(0.993) TCGA-55-8299-01 12 39079407 39079407 G T CPNE8 Missense_Mutation p.Q386K 0.06 tolerated(0.11) benign(0.047) TCGA-55-8299-01 12 41966915 41966915 C T PDZRN4 Silent p.A778A 0.04 TCGA-55-8299-01 12 43944820 43944820 C A ADAMTS20 Silent p.G115G 0.08 TCGA-55-8299-01 12 53819286 53819286 G A AMHR2 Missense_Mutation p.E184K 0.07 tolerated(0.26) benign(0) TCGA-55-8299-01 12 56092259 56092259 C T ITGA7 Missense_Mutation p.G371E 0.06 tolerated(0.62) benign(0.004) TCGA-55-8299-01 12 76741438 76741438 C A BBS10 Missense_Mutation p.M109I 0.06 tolerated(1) benign(0) TCGA-55-8299-01 13 58298893 58298893 T C PCDH17 Missense_Mutation p.V982A 0.04 tolerated(0.42) benign(0.003) TCGA-55-8299-01 13 92346009 92346009 G T GPC5 Silent p.S298S 0.05 TCGA-55-8299-01 14 20482527 20482527 A G OR4K14 Missense_Mutation p.Y276H 0.06 deleterious(0) probably_damaging(0.995) TCGA-55-8299-01 14 20528678 20528678 C A OR4L1 Missense_Mutation p.Q159K 0.05 deleterious(0) probably_damaging(0.992) TCGA-55-8299-01 14 70477560 70477560 G T SMOC1 Missense_Mutation p.A252S 0.06 deleterious(0.04) possibly_damaging(0.716) TCGA-55-8299-01 14 73029134 73029134 C A RGS6 Missense_Mutation p.L478M 0.05 tolerated(0.17) benign(0.027) TCGA-55-8299-01 14 73198546 73198546 G A DPF3 Missense_Mutation p.A133V 0.12 tolerated(0.36) benign(0) TCGA-55-8299-01 14 74665653 74665653 C T LIN52 Silent p.L108L 0.06 TCGA-55-8299-01 14 78184788 78184788 T C SNW1 Missense_Mutation p.Q445R 0.06 tolerated(0.05) benign(0.009) TCGA-55-8299-01 14 94464490 94464490 G A LINC00521 RNA 0.06 TCGA-55-8299-01 15 102346217 102346217 G T OR4F6 Missense_Mutation p.V99F 0.03 tolerated_low_confidence(0.09) benign(0.092) TCGA-55-8299-01 15 23889937 23889937 G A MAGEL2 Missense_Mutation p.P382S 0.08 tolerated(0.43) benign(0.004) TCGA-55-8299-01 15 31206216 31206216 A T FAN1 Missense_Mutation p.N578I 0.04 deleterious(0) benign(0.413) TCGA-55-8299-01 15 31324990 31324990 T C TRPM1 Missense_Mutation p.I969V 0.05 tolerated(0.09) probably_damaging(0.999) TCGA-55-8299-01 15 31324991 31324991 C T TRPM1 Silent p.V968V 0.06 TCGA-55-8299-01 15 45047475 45047475 A G TRIM69 Silent p.P128P 0.05 TCGA-55-8299-01 15 74178444 74178444 G T TBC1D21 Missense_Mutation p.G202V 0.08 deleterious(0) probably_damaging(0.977) TCGA-55-8299-01 15 85411391 85411391 G A ALPK3 Missense_Mutation p.A1810T 0.03 tolerated(0.1) benign(0.144) TCGA-55-8299-01 15 89398156 89398156 G A ACAN Silent p.V780V 0.11 TCGA-55-8299-01 16 27518346 27518346 C A GTF3C1 Silent p.L458L 0.05 TCGA-55-8299-01 16 28995230 28995230 G A SPNS1 Missense_Mutation p.A482T 0.05 tolerated(0.05) possibly_damaging(0.754) TCGA-55-8299-01 16 4935802 4935802 G A PPL Nonsense_Mutation p.Q952* 0.04 TCGA-55-8299-01 16 58071482 58071482 A G MMP15 Missense_Mutation p.Y90C 0.03 deleterious(0) probably_damaging(0.989) TCGA-55-8299-01 16 72110738 72110738 C G HPR Missense_Mutation p.P269A 0.05 tolerated(0.09) possibly_damaging(0.803) TCGA-55-8299-01 16 72133735 72133735 G T DHX38 Silent p.L355L 0.09 TCGA-55-8299-01 16 72156877 72156877 C G PMFBP1 Missense_Mutation p.E902Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-8299-01 16 85954779 85954779 T A IRF8 Missense_Mutation p.M391K 0.06 deleterious(0.04) benign(0.013) TCGA-55-8299-01 16 88958348 88958348 G T CBFA2T3 Missense_Mutation p.S218Y 0.11 tolerated(0.2) possibly_damaging(0.695) TCGA-55-8299-01 16 89341284 89341284 G T ANKRD11 Missense_Mutation p.P2551T 0.07 probably_damaging(0.999) TCGA-55-8299-01 17 10247342 10247342 G T MYH13 Missense_Mutation p.Q557K 0.09 deleterious(0.04) probably_damaging(0.981) TCGA-55-8299-01 17 10436617 10436617 C T MYH2 Missense_Mutation p.R809K 0.04 tolerated(1) benign(0) TCGA-55-8299-01 17 10728617 10728617 T C PIRT Missense_Mutation p.K116E 0.05 tolerated(0.22) probably_damaging(0.994) TCGA-55-8299-01 17 18188778 18188778 C A TOP3A Missense_Mutation p.G552C 0.08 deleterious(0) probably_damaging(0.997) TCGA-55-8299-01 17 29227411 29227411 T C TEFM Intron 0.08 TCGA-55-8299-01 17 34171535 34171535 G T TAF15 Missense_Mutation p.R411I 0.04 deleterious_low_confidence(0) unknown(0) TCGA-55-8299-01 17 3424291 3424291 C A TRPV3 Missense_Mutation p.V596L 0.05 tolerated(0.44) benign(0.006) TCGA-55-8299-01 17 38146346 38146346 G A PSMD3 Splice_Site p.X293_splice 0.08 TCGA-55-8299-01 17 38933151 38933151 C A KRT27 3'UTR 0.14 TCGA-55-8299-01 17 41001207 41001207 C T AOC2 Silent p.L565L 0.06 TCGA-55-8299-01 17 42992452 42992452 C A GFAP Missense_Mutation p.A135S 0.06 tolerated(0.25) benign(0.086) TCGA-55-8299-01 17 46669481 46669481 C A HOXB5 3'UTR 0.14 TCGA-55-8299-01 17 60342281 60342281 T A TBC1D3P2 3'Flank 0.06 TCGA-55-8299-01 17 61466820 61466820 C T TANC2 Missense_Mutation p.S915F 0.07 deleterious(0) probably_damaging(0.979) TCGA-55-8299-01 17 6927841 6927841 C G BCL6B Missense_Mutation p.R175G 0.08 tolerated(0.11) benign(0.251) TCGA-55-8299-01 17 72541913 72541913 G A CD300C Silent p.A3A 0.12 TCGA-55-8299-01 17 76495080 76495080 G C DNAH17-AS1 5'UTR 0.14 TCGA-55-8299-01 17 7943288 7943288 C A ALOX15B Missense_Mutation p.Q146K 0.06 tolerated(0.06) benign(0.005) TCGA-55-8299-01 17 8219168 8219168 T C ARHGEF15 Missense_Mutation p.V506A 0.06 tolerated(0.11) possibly_damaging(0.627) TCGA-55-8299-01 18 28919787 28919787 C G DSG1 Missense_Mutation p.P496A 0.05 tolerated(0.52) benign(0) TCGA-55-8299-01 18 77246650 77246650 G C NFATC1 Missense_Mutation p.S819T 0.08 tolerated(0.43) benign(0.004) TCGA-55-8299-01 19 10334604 10334604 C A S1PR2 Silent p.L326L 0.10 TCGA-55-8299-01 19 1220649 1220649 G T STK11 Nonsense_Mutation p.E223* 0.10 TCGA-55-8299-01 19 14910760 14910760 G T OR7C1 Silent p.L63L 0.10 TCGA-55-8299-01 19 17058031 17058031 T C CPAMD8 Missense_Mutation p.M886V 0.08 tolerated(1) benign(0.001) TCGA-55-8299-01 19 17728564 17728564 G T UNC13A Missense_Mutation p.T1502K 0.06 deleterious(0) probably_damaging(0.999) TCGA-55-8299-01 19 4171661 4171661 A T CREB3L3 Nonsense_Mutation p.R361* 0.05 TCGA-55-8299-01 19 51219652 51219652 A G SHANK1 Silent p.D113D 0.05 TCGA-55-8299-01 19 53571739 53571739 C A ZNF160 Missense_Mutation p.G683V 0.05 deleterious(0) probably_damaging(0.999) TCGA-55-8299-01 19 54676858 54676858 C A TMC4 5'UTR 0.05 TCGA-55-8299-01 19 55047002 55047002 G T KIR3DX1 Missense_Mutation p.G183C 0.11 deleterious(0) probably_damaging(0.998) TCGA-55-8299-01 19 55530019 55530019 C A GP6 Splice_Site p.X242_splice 0.08 TCGA-55-8299-01 19 9408633 9408633 T A ZNF699 Missense_Mutation p.Q70L 0.05 tolerated(0.09) benign(0) TCGA-55-8299-01 1 100757178 100757178 C A RTCA 3'UTR 0.09 TCGA-55-8299-01 1 101705593 101705593 C A S1PR1 Missense_Mutation p.S351R 0.08 tolerated(0.1) probably_damaging(0.98) TCGA-55-8299-01 1 114354882 114354882 C A RSBN1 Silent p.A51A 0.08 TCGA-55-8299-01 1 12025546 12025546 A G PLOD1 Missense_Mutation p.M494V 0.11 deleterious(0) benign(0.119) TCGA-55-8299-01 1 12837589 12837589 G T PRAMEF12 Silent p.G433G 0.06 TCGA-55-8299-01 1 152193345 152193345 A G HRNR Missense_Mutation p.S254P 0.05 unknown(0) TCGA-55-8299-01 1 152323159 152323159 C T FLG2 Missense_Mutation p.R2368K 0.08 benign(0.067) TCGA-55-8299-01 1 155057860 155057860 G T EFNA3 Missense_Mutation p.G141V 0.10 deleterious(0) probably_damaging(1) TCGA-55-8299-01 1 159860280 159860280 G T CCDC19 Silent p.R88R 0.07 TCGA-55-8299-01 1 159862999 159862999 C A CCDC19 Missense_Mutation p.V34L 0.03 deleterious(0.02) probably_damaging(0.996) TCGA-55-8299-01 1 162825463 162825463 C T C1orf110 Silent p.Q91Q 0.07 TCGA-55-8299-01 1 169446397 169446397 T A SLC19A2 Missense_Mutation p.E268V 0.07 tolerated(0.13) benign(0.049) TCGA-55-8299-01 1 176564301 176564301 G T PAPPA2 Nonsense_Mutation p.G521* 0.09 TCGA-55-8299-01 1 183596670 183596670 C T ARPC5 Silent p.V154V 0.04 TCGA-55-8299-01 1 201618284 201618284 C T NAV1 Missense_Mutation p.P163L 0.06 deleterious(0.01) benign(0.062) TCGA-55-8299-01 1 201618285 201618285 G T NAV1 Silent p.P163P 0.06 TCGA-55-8299-01 1 202270345 202270345 T A LGR6 Missense_Mutation p.L304Q 0.10 deleterious(0) probably_damaging(0.989) TCGA-55-8299-01 1 229568737 229568737 G A ACTA1 Silent p.H42H 0.09 TCGA-55-8299-01 1 235956906 235956906 T G LYST Missense_Mutation p.Q1338P 0.07 deleterious(0) probably_damaging(0.985) TCGA-55-8299-01 1 236368531 236368531 C A GPR137B Missense_Mutation p.P358T 0.05 tolerated(0.14) benign(0.396) TCGA-55-8299-01 1 236990189 236990189 C T MTR Missense_Mutation p.H330Y 0.04 deleterious(0.01) probably_damaging(0.943) TCGA-55-8299-01 1 238053218 238053218 G C ZP4 Missense_Mutation p.H117D 0.06 tolerated(0.08) benign(0.065) TCGA-55-8299-01 1 245018847 245018847 C A HNRNPU Missense_Mutation p.G744V 0.08 tolerated(0.08) unknown(0) TCGA-55-8299-01 1 247752595 247752595 C A OR2G2 Missense_Mutation p.L312M 0.06 tolerated(0.13) unknown(0) TCGA-55-8299-01 1 248789973 248789973 C A OR2T11 Missense_Mutation p.G153C 0.11 deleterious(0) probably_damaging(1) TCGA-55-8299-01 1 43213043 43213043 G A LEPRE1 Missense_Mutation p.S652F 0.04 deleterious(0) possibly_damaging(0.847) TCGA-55-8299-01 1 82434975 82434975 A G LPHN2 Silent p.L862L 0.05 TCGA-55-8299-01 20 43355750 43355750 C G WISP2 Silent p.V185V 0.04 TCGA-55-8299-01 20 57766108 57766108 C A ZNF831 Missense_Mutation p.P12T 0.06 deleterious(0.01) benign(0.177) TCGA-55-8299-01 20 62729935 62729935 C A OPRL1 Missense_Mutation p.A299D 0.08 deleterious(0) probably_damaging(0.932) TCGA-55-8299-01 20 62729936 62729936 C T OPRL1 Silent p.A299A 0.09 TCGA-55-8299-01 21 31027160 31027160 G T GRIK1 Silent p.T250T 0.05 TCGA-55-8299-01 21 41561153 41561153 A G DSCAM Missense_Mutation p.I790T 0.05 deleterious(0) possibly_damaging(0.854) TCGA-55-8299-01 21 46011572 46011572 G A KRTAP10-6 Missense_Mutation p.P265L 0.06 tolerated(0.29) unknown(0) TCGA-55-8299-01 22 17073300 17073300 G T CCT8L2 Silent p.I47I 0.05 TCGA-55-8299-01 22 19747146 19747146 C T TBX1 5'UTR 0.06 TCGA-55-8299-01 22 26688383 26688383 G T SEZ6L Nonsense_Mutation p.E36* 0.06 TCGA-55-8299-01 22 32635034 32635034 C T SLC5A4 Missense_Mutation p.G174E 0.06 deleterious(0.01) probably_damaging(0.987) TCGA-55-8299-01 22 38121317 38121317 T A TRIOBP Silent p.G918G 0.03 TCGA-55-8299-01 22 50898555 50898555 G A SBF1 Missense_Mutation p.P1106L 0.05 tolerated(0.33) benign(0.014) TCGA-55-8299-01 2 119729105 119729105 C T MARCO Missense_Mutation p.A152V 0.05 tolerated(0.32) benign(0.048) TCGA-55-8299-01 2 137814764 137814764 C T THSD7B Missense_Mutation p.S305L 0.07 tolerated(0.66) probably_damaging(0.964) TCGA-55-8299-01 2 152423858 152423858 G T NEB Missense_Mutation p.H5994N 0.05 benign(0.045) TCGA-55-8299-01 2 152467042 152467042 G A NEB Silent p.D4002D 0.07 TCGA-55-8299-01 2 1651960 1651960 G T PXDN Silent p.R1198R 0.06 TCGA-55-8299-01 2 176981682 176981682 G T HOXD10 Missense_Mutation p.A41S 0.05 tolerated(0.42) benign(0.06) TCGA-55-8299-01 2 179319148 179319148 G T DFNB59 Missense_Mutation p.G101W 0.04 deleterious(0) probably_damaging(1) TCGA-55-8299-01 2 179597694 179597694 G C TTN Nonsense_Mutation p.Y5403* 0.05 TCGA-55-8299-01 2 211512672 211512672 T A CPS1 Missense_Mutation p.M1082K 0.03 deleterious(0) benign(0.124) TCGA-55-8299-01 2 233244495 233244495 C T ALPP Missense_Mutation p.T169I 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-55-8299-01 2 234905057 234905057 C G TRPM8 Silent p.L1009L 0.06 TCGA-55-8299-01 2 238273009 238273009 C A COL6A3 Missense_Mutation p.E1967D 0.05 benign(0.013) TCGA-55-8299-01 2 241069342 241069342 C A MYEOV2 Missense_Mutation p.V123L 0.05 tolerated_low_confidence(0.28) unknown(0) TCGA-55-8299-01 2 25965339 25965339 G A ASXL2 Silent p.F1289F 0.16 TCGA-55-8299-01 2 31215753 31215753 T G GALNT14 Intron 0.05 TCGA-55-8299-01 2 44079786 44079786 C A ABCG8 Missense_Mutation p.A248D 0.07 deleterious(0) probably_damaging(0.962) TCGA-55-8299-01 2 54858311 54858311 G T SPTBN1 Missense_Mutation p.V1043L 0.04 tolerated(0.58) benign(0.254) TCGA-55-8299-01 2 64327576 64327576 C A PELI1 Missense_Mutation p.V87L 0.04 deleterious(0.01) possibly_damaging(0.868) TCGA-55-8299-01 2 73868350 73868350 G C NAT8 Missense_Mutation p.R136G 0.09 deleterious(0.01) benign(0.03) TCGA-55-8299-01 2 89247092 89247092 C A IGKV1-5 Missense_Mutation p.M26I 0.07 deleterious(0.02) benign(0.176) TCGA-55-8299-01 2 89247093 89247093 A T IGKV1-5 Missense_Mutation p.M26K 0.07 deleterious(0) possibly_damaging(0.778) TCGA-55-8299-01 2 90121864 90121864 C A IGKV1D-17 Missense_Mutation p.Q28K 0.06 deleterious(0.01) probably_damaging(0.977) TCGA-55-8299-01 2 9593040 9593040 A G CPSF3 Splice_Site p.X466_splice 0.07 TCGA-55-8299-01 3 109128846 109128846 C T RP11-702L6.4 RNA 0.17 TCGA-55-8299-01 3 119886715 119886715 G T GPR156 Silent p.R537R 0.07 TCGA-55-8299-01 3 151163918 151163918 G A IGSF10 Missense_Mutation p.P1284L 0.05 tolerated(0.55) benign(0.008) TCGA-55-8299-01 3 154878222 154878222 G A MME Missense_Mutation p.G549R 0.06 deleterious(0) possibly_damaging(0.822) TCGA-55-8299-01 3 165548106 165548106 G T BCHE Missense_Mutation p.P239H 0.10 deleterious(0) probably_damaging(0.944) TCGA-55-8299-01 3 38043985 38043985 G T VILL Silent p.V526V 0.05 TCGA-55-8299-01 3 38938614 38938614 C G SCN11A Missense_Mutation p.V709L 0.06 deleterious(0) benign(0.078) TCGA-55-8299-01 3 53699686 53699686 G T CACNA1D Splice_Site p.X256_splice 0.05 TCGA-55-8299-01 4 113539658 113539658 T C C4orf21 Missense_Mutation p.N514D 0.05 tolerated(0.64) benign(0.001) TCGA-55-8299-01 4 114195692 114195692 G T ANK2 Missense_Mutation p.D524Y 0.06 probably_damaging(0.999) TCGA-55-8299-01 4 13602919 13602919 C A BOD1L1 Missense_Mutation p.D1869Y 0.05 benign(0.008) TCGA-55-8299-01 4 140450217 140450217 T C SETD7 Missense_Mutation p.E177G 0.08 tolerated(0.11) benign(0) TCGA-55-8299-01 4 169393954 169393954 G A DDX60L 5'UTR 0.11 TCGA-55-8299-01 4 184205471 184205471 G T WWC2 Silent p.P992P 0.07 TCGA-55-8299-01 4 22749300 22749300 C T GBA3 Missense_Mutation p.S223L 0.05 deleterious(0) benign(0.176) TCGA-55-8299-01 4 25014061 25014061 T C LGI2 Missense_Mutation p.K239R 0.07 tolerated(0.4) benign(0.068) TCGA-55-8299-01 4 26487448 26487448 G A CCKAR Missense_Mutation p.P146L 0.06 deleterious(0) probably_damaging(1) TCGA-55-8299-01 4 38774783 38774783 C A TLR10 Missense_Mutation p.C810F 0.07 deleterious_low_confidence(0.02) benign(0.151) TCGA-55-8299-01 4 52861972 52861972 G A LRRC66 Nonsense_Mutation p.Q406* 0.06 TCGA-55-8299-01 4 71275371 71275371 T C PROL1 Missense_Mutation p.L109P 0.03 tolerated_low_confidence(0.1) possibly_damaging(0.883) TCGA-55-8299-01 5 114499262 114499262 C T TRIM36 Missense_Mutation p.R84Q 0.05 deleterious(0.01) possibly_damaging(0.59) TCGA-55-8299-01 5 127595459 127595459 G A FBN2 Silent p.L2809L 0.03 TCGA-55-8299-01 5 131303676 131303676 T C ACSL6 Missense_Mutation p.D518G 0.05 deleterious(0) probably_damaging(0.999) TCGA-55-8299-01 5 135693041 135693041 C T TRPC7 Missense_Mutation p.R12H 0.09 deleterious_low_confidence(0) possibly_damaging(0.902) TCGA-55-8299-01 5 14463026 14463026 G A TRIO Missense_Mutation p.D1887N 0.05 benign(0.005) TCGA-55-8299-01 5 156589752 156589752 C A FAM71B Missense_Mutation p.E508D 0.06 tolerated(0.06) possibly_damaging(0.516) TCGA-55-8299-01 5 177677090 177677090 G T COL23A1 Missense_Mutation p.P344H 0.04 deleterious(0) probably_damaging(1) TCGA-55-8299-01 5 31532427 31532427 G T C5orf22 5'UTR 0.10 TCGA-55-8299-01 5 39382719 39382719 C A DAB2 Splice_Site p.X447_splice 0.05 TCGA-55-8299-01 5 40843362 40843362 C T CARD6 Missense_Mutation p.T131I 0.06 deleterious(0.02) benign(0.048) TCGA-55-8299-01 5 71493770 71493770 T A MAP1B Missense_Mutation p.S1530T 0.06 probably_damaging(0.991) TCGA-55-8299-01 6 106978148 106978148 G T AIM1 Missense_Mutation p.G1151V 0.07 deleterious(0) probably_damaging(0.996) TCGA-55-8299-01 6 116784478 116784478 C A FAM26F Silent p.I186I 0.06 TCGA-55-8299-01 6 136687481 136687481 C G MAP7 Missense_Mutation p.A347P 0.06 deleterious(0.04) probably_damaging(0.969) TCGA-55-8299-01 6 144795842 144795842 G T UTRN Missense_Mutation p.V1095L 0.06 tolerated(0.57) benign(0.003) TCGA-55-8299-01 6 49578836 49578836 C A RHAG Missense_Mutation p.R323M 0.06 tolerated(0.06) benign(0.062) TCGA-55-8299-01 6 54212271 54212271 T C TINAG Silent p.N285N 0.06 TCGA-55-8299-01 6 56470331 56470331 A T DST Intron 0.04 TCGA-55-8299-01 6 91233477 91233477 C A MAP3K7 Missense_Mutation p.S461I 0.05 deleterious(0.03) possibly_damaging(0.84) TCGA-55-8299-01 6 97627327 97627327 C T MMS22L Silent p.G831G 0.04 TCGA-55-8299-01 7 100676134 100676134 C T MUC17 Silent p.S479S 0.06 TCGA-55-8299-01 7 102939050 102939050 A C PMPCB Silent p.T45T 0.05 TCGA-55-8299-01 7 123257754 123257754 C A ASB15 Missense_Mutation p.N138K 0.08 deleterious(0.01) possibly_damaging(0.603) TCGA-55-8299-01 7 128128171 128128171 G T METTL2B Missense_Mutation p.V209F 0.04 deleterious(0) probably_damaging(0.997) TCGA-55-8299-01 7 129125748 129125748 G T STRIP2 3'UTR 0.07 TCGA-55-8299-01 7 130002782 130002782 A G CPA5 Missense_Mutation p.I232V 0.11 tolerated(0.1) benign(0.015) TCGA-55-8299-01 7 137170120 137170120 C T DGKI Silent p.Q809Q 0.10 TCGA-55-8299-01 7 142139495 142139495 G C TRBV7-6 Missense_Mutation p.P44A 0.05 deleterious(0.01) probably_damaging(0.981) TCGA-55-8299-01 7 142326854 142326854 T C TRBV19 Missense_Mutation p.M51T 0.05 deleterious(0) probably_damaging(0.994) TCGA-55-8299-01 7 143807226 143807226 T A OR2A2 Missense_Mutation p.L184H 0.04 deleterious(0) probably_damaging(0.999) TCGA-55-8299-01 7 144098633 144098633 C A NOBOX Missense_Mutation p.R117L 0.07 deleterious(0.03) benign(0.001) TCGA-55-8299-01 7 144288615 144288615 C A TPK1 Missense_Mutation p.Q134H 0.04 tolerated(0.34) benign(0.263) TCGA-55-8299-01 7 158827313 158827313 G T VIPR2 Missense_Mutation p.P280T 0.07 tolerated(0.4) probably_damaging(1) TCGA-55-8299-01 7 23313852 23313852 C T GPNMB 3'UTR 0.06 TCGA-55-8299-01 7 27237738 27237738 C A HOXA13 3'UTR 0.09 TCGA-55-8299-01 7 30830815 30830815 C T FAM188B Missense_Mutation p.S233L 0.05 tolerated(0.21) benign(0.005) TCGA-55-8299-01 7 42007403 42007403 A T GLI3 Missense_Mutation p.L741H 0.05 deleterious(0) possibly_damaging(0.886) TCGA-55-8299-01 7 96653652 96653652 T C DLX5 Missense_Mutation p.Y95C 0.06 deleterious(0.01) possibly_damaging(0.653) TCGA-55-8299-01 8 10623272 10623272 C A PINX1 Missense_Mutation p.R209L 0.03 tolerated(0.26) benign(0.039) TCGA-55-8299-01 8 109215340 109215340 C A EIF3E Missense_Mutation p.V391L 0.06 tolerated(0.08) possibly_damaging(0.463) TCGA-55-8299-01 8 133978845 133978845 G T TG Missense_Mutation p.Q1863H 0.05 deleterious(0.01) possibly_damaging(0.553) TCGA-55-8299-01 8 134274312 134274312 C A NDRG1 Missense_Mutation p.G102C 0.05 deleterious(0.02) probably_damaging(0.953) TCGA-55-8299-01 8 52325775 52325775 G T PXDNL Silent p.S613S 0.06 TCGA-55-8299-01 8 73848698 73848698 G T KCNB2 Missense_Mutation p.A370S 0.04 deleterious(0.04) probably_damaging(0.988) TCGA-55-8299-01 9 107288781 107288781 G T OR13C4 Missense_Mutation p.A237E 0.04 deleterious(0) probably_damaging(1) TCGA-55-8299-01 9 125330487 125330487 C A OR1L8 Missense_Mutation p.K90N 0.07 tolerated(0.42) benign(0.013) TCGA-55-8299-01 9 131022860 131022860 G A GOLGA2 Missense_Mutation p.R521C 0.07 deleterious(0.01) probably_damaging(0.979) TCGA-55-8299-01 9 140952657 140952657 G A CACNA1B Silent p.E1421E 0.07 TCGA-55-8299-01 9 27455459 27455459 C A MOB3B Silent p.L30L 0.07 TCGA-55-8299-01 9 80919793 80919793 G C PSAT1 Missense_Mutation p.A112P 0.06 tolerated(0.14) probably_damaging(0.976) TCGA-55-8299-01 9 84532404 84532404 G C SPATA31D5P RNA 0.04 TCGA-55-8299-01 X 100265463 100265463 G T TRMT2B 3'UTR 0.04 TCGA-55-8299-01 X 100496819 100496819 A T DRP2 Missense_Mutation p.E241V 0.09 deleterious(0) possibly_damaging(0.807) TCGA-55-8299-01 X 101395904 101395904 G T TCEAL6 Missense_Mutation p.L134M 0.06 deleterious(0.01) possibly_damaging(0.805) TCGA-55-8299-01 X 102334747 102334747 G T NXF3 Nonsense_Mutation p.Y368* 0.04 TCGA-55-8299-01 X 102931356 102931356 G C MORF4L2 Nonsense_Mutation p.Y200* 0.08 TCGA-55-8299-01 X 102977173 102977173 G A GLRA4 Missense_Mutation p.P209S 0.05 deleterious(0.01) possibly_damaging(0.648) TCGA-55-8299-01 X 107414632 107414632 C T COL4A6 Missense_Mutation p.E1089K 0.08 probably_damaging(0.955) TCGA-55-8299-01 X 111155754 111155754 C T TRPC5 Missense_Mutation p.R222H 0.02 tolerated(0.08) probably_damaging(0.947) TCGA-55-8299-01 X 124097566 124097566 G T TENM1 Missense_Mutation p.P13T 0.05 tolerated_low_confidence(1) benign(0) TCGA-55-8299-01 X 128873163 128873163 C A XPNPEP2 5'UTR 0.04 TCGA-55-8299-01 X 131351115 131351115 G C RAP2C Missense_Mutation p.T61S 0.04 deleterious(0.03) possibly_damaging(0.501) TCGA-55-8299-01 X 134992285 134992285 A T SAGE1 Missense_Mutation p.N607I 0.03 deleterious(0) probably_damaging(0.991) TCGA-55-8299-01 X 135825788 135825788 G C ARHGEF6 Missense_Mutation p.T206R 0.07 deleterious(0) possibly_damaging(0.588) TCGA-55-8299-01 X 136651060 136651060 G A ZIC3 Splice_Site p.X354_splice 0.05 TCGA-55-8299-01 X 140969364 140969364 G T MAGEC3 Nonsense_Mutation p.E231* 0.03 TCGA-55-8299-01 X 140994823 140994823 C G MAGEC1 Missense_Mutation p.P545A 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.539) TCGA-55-8299-01 X 148568579 148568579 C T IDS Missense_Mutation p.V142I 0.06 tolerated(0.05) benign(0.35) TCGA-55-8299-01 X 151358389 151358389 G T GABRA3 Missense_Mutation p.T319N 0.05 deleterious(0) probably_damaging(1) TCGA-55-8299-01 X 151996333 151996333 A T CETN2 3'UTR 0.06 TCGA-55-8299-01 X 153129865 153129865 C A L1CAM Missense_Mutation p.W1078C 0.05 tolerated(0.1) possibly_damaging(0.469) TCGA-55-8299-01 X 153129866 153129866 C A L1CAM Missense_Mutation p.W1078L 0.05 tolerated(0.45) benign(0.044) TCGA-55-8299-01 X 153596104 153596104 G T FLNA Missense_Mutation p.L209M 0.05 deleterious(0) probably_damaging(1) TCGA-55-8299-01 X 153928279 153928279 C A GAB3 Missense_Mutation p.L375F 0.04 deleterious(0) possibly_damaging(0.831) TCGA-55-8299-01 X 154221273 154221273 T A F8 Missense_Mutation p.H180L 0.03 deleterious(0) probably_damaging(0.99) TCGA-55-8299-01 X 1752120 1752120 G A ASMT Missense_Mutation p.V242M 0.05 deleterious(0) probably_damaging(0.998) TCGA-55-8299-01 X 21887738 21887738 C T MBTPS2 Silent p.P304P 0.05 TCGA-55-8299-01 X 24229383 24229383 C G ZFX Missense_Mutation p.H770D 0.06 deleterious(0) probably_damaging(0.997) TCGA-55-8299-01 X 24948614 24948614 C A POLA1 Nonsense_Mutation p.Y1397* 0.06 TCGA-55-8299-01 X 53634598 53634598 C T HUWE1 Silent p.V794V 0.05 TCGA-55-8299-01 X 63411357 63411357 A T AMER1 Missense_Mutation p.Y604N 0.08 deleterious_low_confidence(0.02) benign(0.014) TCGA-55-8299-01 X 63411911 63411911 G T AMER1 Missense_Mutation p.P419H 0.05 tolerated(0.07) benign(0.025) TCGA-55-8299-01 X 69283109 69283109 C A OTUD6A Silent p.I245I 0.04 TCGA-55-8299-01 X 70345919 70345919 G T MED12 Missense_Mutation p.R819L 0.07 benign(0.111) TCGA-55-8299-01 X 91137958 91137958 G T PCDH11X Intron 0.05 TCGA-55-8299-01 X 9905204 9905204 G T SHROOM2 Silent p.T1206T 0.11 TCGA-55-8301-01 10 102748493 102748493 G C C10orf2 Missense_Mutation p.A176P 0.10 tolerated(0.12) possibly_damaging(0.602) TCGA-55-8301-01 10 103339170 103339170 C A POLL 3'UTR 0.18 TCGA-55-8301-01 10 118969149 118969149 G T KCNK18 Missense_Mutation p.R165L 0.20 tolerated(0.05) possibly_damaging(0.489) TCGA-55-8301-01 10 119044326 119044326 C T PDZD8 Missense_Mutation p.D640N 0.12 deleterious(0.05) benign(0.062) TCGA-55-8301-01 10 119044400 119044400 A G PDZD8 Missense_Mutation p.L615P 0.15 tolerated(0.28) benign(0) TCGA-55-8301-01 10 17275583 17275583 T C VIM Intron 0.24 TCGA-55-8301-01 10 21784724 21784724 G A CASC10 Silent p.H72H 0.30 TCGA-55-8301-01 10 23292197 23292197 G T ARMC3 Missense_Mutation p.V529F 0.14 deleterious(0) benign(0.13) TCGA-55-8301-01 10 267199 267199 T A ZMYND11 Missense_Mutation p.I114K 0.12 tolerated(0.91) benign(0.004) TCGA-55-8301-01 10 31812891 31812891 G T ZEB1 Missense_Mutation p.V879L 0.10 tolerated(0.52) benign(0.285) TCGA-55-8301-01 10 32560779 32560779 G A EPC1 Missense_Mutation p.T714M 0.09 deleterious(0.04) possibly_damaging(0.714) TCGA-55-8301-01 10 37508197 37508197 A T ANKRD30A Missense_Mutation p.Q1130L 0.17 deleterious(0) benign(0.403) TCGA-55-8301-01 10 49482707 49482707 C A FRMPD2 5'UTR 0.15 TCGA-55-8301-01 10 50531980 50531980 C A C10orf71 Missense_Mutation p.P464T 0.14 tolerated(0.28) possibly_damaging(0.744) TCGA-55-8301-01 10 5803383 5803383 C A FAM208B Missense_Mutation p.L2375I 0.12 tolerated(0.23) benign(0.06) TCGA-55-8301-01 11 106647175 106647175 C G GUCY1A2 Missense_Mutation p.R609T 0.15 tolerated(0.06) benign(0.098) TCGA-55-8301-01 11 114441864 114441864 G T NXPE4 Silent p.I477I 0.05 TCGA-55-8301-01 11 117710591 117710591 C A FXYD6 Intron 0.13 TCGA-55-8301-01 11 118984563 118984564 - G C2CD2L Frame_Shift_Ins p.D499Gfs*69 0.11 TCGA-55-8301-01 11 1213597 1213597 C A MUC5AC RNA 0.19 TCGA-55-8301-01 11 122817441 122817441 G T C11orf63 Nonsense_Mutation p.E624* 0.15 TCGA-55-8301-01 11 124294648 124294648 C A OR8B4 Silent p.V40V 0.13 TCGA-55-8301-01 11 134109999 134109999 G T VPS26B Missense_Mutation p.E165D 0.04 tolerated(0.23) probably_damaging(0.969) TCGA-55-8301-01 11 1629483 1629483 C A KRTAP5-3 Missense_Mutation p.V45L 0.15 tolerated(0.33) unknown(0) TCGA-55-8301-01 11 1643307 1643307 C A KRTAP5-4 Missense_Mutation p.C6F 0.09 deleterious_low_confidence(0) unknown(0) TCGA-55-8301-01 11 17409096 17409096 G C KCNJ11 Silent p.L181L 0.07 TCGA-55-8301-01 11 1780824 1780824 A G CTSD Missense_Mutation p.F92L 0.04 deleterious(0) probably_damaging(0.996) TCGA-55-8301-01 11 22257783 22257783 A G ANO5 Silent p.L241L 0.17 TCGA-55-8301-01 11 22360122 22360122 G C SLC17A6 Missense_Mutation p.G15R 0.10 tolerated(0.48) benign(0.013) TCGA-55-8301-01 11 22398219 22398219 G A SLC17A6 Splice_Site p.X471_splice 0.06 TCGA-55-8301-01 11 22707266 22707266 G C GAS2 Missense_Mutation p.L66F 0.21 deleterious(0) probably_damaging(0.962) TCGA-55-8301-01 11 2683297 2683297 C G KCNQ1 Missense_Mutation p.I500M 0.05 tolerated(0.07) possibly_damaging(0.542) TCGA-55-8301-01 11 397046 397046 G T PKP3 Missense_Mutation p.R182L 0.10 deleterious(0.02) benign(0.273) TCGA-55-8301-01 11 4471015 4471015 C T OR52K2 Missense_Mutation p.A149V 0.14 tolerated(0.15) benign(0.047) TCGA-55-8301-01 11 47267033 47267033 G A ACP2 Missense_Mutation p.R181W 0.17 deleterious(0) possibly_damaging(0.512) TCGA-55-8301-01 11 4870051 4870051 G T OR51S1 Silent p.R130R 0.16 TCGA-55-8301-01 11 51411633 51411633 A G OR4A5 Missense_Mutation p.Y255H 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-8301-01 11 5274619 5274619 A G HBG2 Missense_Mutation p.L111P 0.13 deleterious(0) probably_damaging(0.984) TCGA-55-8301-01 11 5291148 5291148 A T HBE1 5'UTR 0.10 TCGA-55-8301-01 11 5509935 5509935 G C OR52D1 5'UTR 0.05 TCGA-55-8301-01 11 5510705 5510705 C A OR52D1 Missense_Mutation p.P257T 0.10 deleterious(0.01) probably_damaging(1) TCGA-55-8301-01 11 5510706 5510706 C G OR52D1 Missense_Mutation p.P257R 0.10 deleterious(0) probably_damaging(1) TCGA-55-8301-01 11 55340149 55340149 G C OR4C16 Missense_Mutation p.L182F 0.14 deleterious(0.01) probably_damaging(1) TCGA-55-8301-01 11 55419131 55419131 C A OR4S2 Missense_Mutation p.P251H 0.21 deleterious(0) probably_damaging(1) TCGA-55-8301-01 11 55873278 55873278 A T OR8H2 Missense_Mutation p.T254S 0.10 tolerated(0.25) possibly_damaging(0.536) TCGA-55-8301-01 11 57184122 57184122 G A SLC43A3 Silent p.T231T 0.14 TCGA-55-8301-01 11 57996111 57996111 G T OR10Q1 Silent p.T79T 0.09 TCGA-55-8301-01 11 58343293 58343293 T C LPXN Intron 0.22 TCGA-55-8301-01 11 5878561 5878561 C A OR52E8 Missense_Mutation p.M124I 0.12 deleterious(0.01) benign(0.049) TCGA-55-8301-01 11 59132126 59132126 T C OR5AN1 Silent p.S65S 0.19 TCGA-55-8301-01 11 60559736 60559737 - G MS4A10 Splice_Site p.X102_splice 0.08 TCGA-55-8301-01 11 61544832 61544832 A C MYRF Missense_Mutation p.N563H 0.09 deleterious(0.02) probably_damaging(0.976) TCGA-55-8301-01 11 61732193 61732193 C A FTH1 3'UTR 0.16 TCGA-55-8301-01 11 62455614 62455614 C T LRRN4CL Missense_Mutation p.E123K 0.11 tolerated(0.45) benign(0.013) TCGA-55-8301-01 11 63137547 63137547 C G SLC22A9 Missense_Mutation p.L7V 0.15 deleterious(0) possibly_damaging(0.882) TCGA-55-8301-01 11 65154590 65154590 G T FRMD8 Missense_Mutation p.R28L 0.20 deleterious(0) probably_damaging(0.995) TCGA-55-8301-01 11 65271719 65271720 AA - MALAT1 RNA 0.10 TCGA-55-8301-01 11 66321528 66321528 G A CTD-3074O7.2 3'Flank 0.08 TCGA-55-8301-01 11 89903278 89903278 C A NAALAD2 Missense_Mutation p.Q462K 0.18 tolerated(0.46) benign(0.001) TCGA-55-8301-01 11 93911534 93911535 - T PANX1 Frame_Shift_Ins p.Y111Lfs*37 0.15 TCGA-55-8301-01 12 10525765 10525765 A G KLRK1 Missense_Mutation p.I200T 0.22 tolerated(1) benign(0.002) TCGA-55-8301-01 12 131276415 131276415 C A STX2 3'UTR 0.24 TCGA-55-8301-01 12 15261974 15261974 T C RERG 3'UTR 0.12 TCGA-55-8301-01 12 26810707 26810707 T C ITPR2 Missense_Mutation p.I709V 0.16 tolerated(0.48) benign(0.001) TCGA-55-8301-01 12 40012846 40012846 T C ABCD2 Missense_Mutation p.Q191R 0.21 deleterious(0) benign(0.264) TCGA-55-8301-01 12 419116 419116 C A KDM5A Silent p.R1077R 0.05 TCGA-55-8301-01 12 51882644 51882644 G T SLC4A8 Missense_Mutation p.K816N 0.08 deleterious(0.01) possibly_damaging(0.621) TCGA-55-8301-01 12 53001891 53001891 G C KRT73 3'UTR 0.09 TCGA-55-8301-01 12 53689313 53689313 G T PFDN5 5'UTR 0.09 TCGA-55-8301-01 12 53876883 53876883 G - MAP3K12 Frame_Shift_Del p.S569Hfs*45 0.18 TCGA-55-8301-01 12 6078535 6078535 G - VWF Frame_Shift_Del p.P2524Rfs*13 0.10 TCGA-55-8301-01 12 75601439 75601439 C A KCNC2 Missense_Mutation p.G109C 0.11 deleterious(0) probably_damaging(0.995) TCGA-55-8301-01 12 96704943 96704943 G A CDK17 Missense_Mutation p.R144W 0.21 deleterious(0) probably_damaging(0.991) TCGA-55-8301-01 13 111119434 111119434 G T COL4A2 Missense_Mutation p.G696C 0.22 probably_damaging(0.983) TCGA-55-8301-01 13 28855517 28855517 G T PAN3 Splice_Site p.X795_splice 0.14 TCGA-55-8301-01 13 36049544 36049544 C A MAB21L1 Silent p.G244G 0.16 TCGA-55-8301-01 13 36049545 36049545 C A MAB21L1 Missense_Mutation p.G244V 0.16 deleterious(0) possibly_damaging(0.606) TCGA-55-8301-01 13 51952446 51952446 C T INTS6 Missense_Mutation p.D511N 0.22 tolerated(0.25) benign(0.11) TCGA-55-8301-01 13 84455507 84455507 C A SLITRK1 Missense_Mutation p.G46C 0.21 deleterious(0) probably_damaging(0.974) TCGA-55-8301-01 14 105356006 105356006 C T CEP170B Silent p.A1263A 0.12 TCGA-55-8301-01 14 105518322 105518322 G A GPR132 Missense_Mutation p.A51V 0.05 tolerated(0.9) benign(0.006) TCGA-55-8301-01 14 106173675 106173675 G A IGHA1 Silent p.L298L 0.05 TCGA-55-8301-01 14 19553768 19553768 G T POTEG Missense_Mutation p.G118C 0.06 deleterious(0) probably_damaging(0.954) TCGA-55-8301-01 14 20502179 20502179 C T OR4K13 Missense_Mutation p.V247M 0.12 deleterious(0) probably_damaging(0.996) TCGA-55-8301-01 14 20611974 20611974 T C OR4N5 Missense_Mutation p.V27A 0.16 deleterious(0) benign(0.289) TCGA-55-8301-01 14 21025049 21025049 A T RNASE9 Silent p.P65P 0.17 TCGA-55-8301-01 14 22192103 22192103 C A TRAV3 5'UTR 0.03 TCGA-55-8301-01 14 22675429 22675429 G A TRAV34 5'UTR 0.17 TCGA-55-8301-01 14 23564386 23564386 C T ACIN1 Missense_Mutation p.G37E 0.18 probably_damaging(0.997) TCGA-55-8301-01 14 36988306 36988306 T C NKX2-1 Missense_Mutation p.Y116C 0.24 deleterious(0.03) probably_damaging(0.998) TCGA-55-8301-01 14 58877570 58877570 T C TIMM9 Silent p.K42K 0.14 TCGA-55-8301-01 14 63246527 63246527 C A KCNH5 Missense_Mutation p.L646F 0.16 deleterious(0.01) probably_damaging(0.981) TCGA-55-8301-01 14 71455404 71455404 G T PCNX Missense_Mutation p.G811V 0.09 deleterious(0.03) probably_damaging(1) TCGA-55-8301-01 14 72818888 72818888 C A RGS6 Missense_Mutation p.P57H 0.12 deleterious(0) possibly_damaging(0.896) TCGA-55-8301-01 14 76964598 76964598 C A ESRRB Missense_Mutation p.Q367K 0.20 deleterious(0.02) possibly_damaging(0.875) TCGA-55-8301-01 14 89109347 89109347 A C EML5 Missense_Mutation p.I1376S 0.04 deleterious(0) benign(0.06) TCGA-55-8301-01 14 91360904 91360904 T C RPS6KA5 Silent p.E499E 0.09 TCGA-55-8301-01 14 94964441 94964441 G T SERPINA12 Silent p.I98I 0.16 TCGA-55-8301-01 15 41364130 41364130 T A INO80 Missense_Mutation p.I508F 0.04 tolerated(0.34) possibly_damaging(0.86) TCGA-55-8301-01 15 51993418 51993418 G T SCG3 Missense_Mutation p.G395V 0.18 tolerated_low_confidence(0.22) benign(0.003) TCGA-55-8301-01 15 56388683 56388683 C A RFX7 Missense_Mutation p.V415F 0.17 deleterious(0) possibly_damaging(0.825) TCGA-55-8301-01 15 89399457 89399457 C - ACAN Frame_Shift_Del p.P1215Lfs*3 0.29 TCGA-55-8301-01 15 92459310 92459310 C T SLCO3A1 Silent p.L90L 0.05 TCGA-55-8301-01 16 12145858 12145858 C T SNX29 Silent p.V301V 0.05 TCGA-55-8301-01 16 17211808 17211808 C A XYLT1 Missense_Mutation p.R751M 0.09 deleterious(0) probably_damaging(1) TCGA-55-8301-01 16 23093767 23093767 A G USP31 Missense_Mutation p.F648L 0.08 deleterious(0) probably_damaging(0.999) TCGA-55-8301-01 16 25251865 25251865 T C ZKSCAN2 Missense_Mutation p.M726V 0.16 tolerated(0.55) benign(0) TCGA-55-8301-01 16 32890818 32890818 C A SLC6A10P RNA 0.10 TCGA-55-8301-01 16 48149520 48149520 G T ABCC12 Silent p.R599R 0.11 TCGA-55-8301-01 16 51175465 51175465 T G SALL1 Missense_Mutation p.K223T 0.07 tolerated(0.68) possibly_damaging(0.894) TCGA-55-8301-01 16 56309859 56309859 G T GNAO1 Missense_Mutation p.G60C 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-8301-01 16 56309860 56309860 G T GNAO1 Missense_Mutation p.G60V 0.16 deleterious(0) probably_damaging(0.998) TCGA-55-8301-01 16 66621857 66621857 C A CMTM2 Silent p.I194I 0.09 TCGA-55-8301-01 16 68009780 68009780 G T DPEP3 Missense_Mutation p.T477N 0.21 tolerated_low_confidence(0.22) benign(0.029) TCGA-55-8301-01 16 68405541 68405541 C T SMPD3 Missense_Mutation p.A182T 0.12 deleterious(0.04) probably_damaging(0.935) TCGA-55-8301-01 16 74542769 74542769 C T GLG1 Missense_Mutation p.A176T 0.10 tolerated(0.09) possibly_damaging(0.827) TCGA-55-8301-01 16 89986056 89986056 C T MC1R Silent p.S130S 0.10 TCGA-55-8301-01 17 1417237 1417237 C A INPP5K Silent p.A27A 0.13 TCGA-55-8301-01 17 27581351 27581351 G A CRYBA1 Missense_Mutation p.R211H 0.10 deleterious(0.02) possibly_damaging(0.833) TCGA-55-8301-01 17 28770917 28770917 C A CPD Missense_Mutation p.T824N 0.04 deleterious(0.03) probably_damaging(0.995) TCGA-55-8301-01 17 29654514 29654514 C G NF1 Intron 0.29 TCGA-55-8301-01 17 41165492 41165492 G A IFI35 Splice_Site p.X128_splice 0.22 TCGA-55-8301-01 17 42882827 42882827 C T GJC1 Missense_Mutation p.R120H 0.22 tolerated(0.46) benign(0.001) TCGA-55-8301-01 17 51901574 51901574 G A KIF2B Missense_Mutation p.V394M 0.17 deleterious(0.01) probably_damaging(1) TCGA-55-8301-01 17 60043908 60043908 T C MED13 Silent p.A1432A 0.37 TCGA-55-8301-01 17 64049912 64049912 T C CEP112 Missense_Mutation p.D387G 0.23 deleterious(0) probably_damaging(0.999) TCGA-55-8301-01 17 7577547 7577547 C A TP53 Missense_Mutation p.G245V 0.21 deleterious(0) probably_damaging(1) TCGA-55-8301-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.21 deleterious(0) probably_damaging(1) TCGA-55-8301-01 17 76525742 76525742 T G DNAH17 Silent p.R1107R 0.27 TCGA-55-8301-01 17 78882694 78882694 G T RPTOR Missense_Mutation p.V829L 0.28 tolerated(1) benign(0) TCGA-55-8301-01 18 22806076 22806076 C A ZNF521 Missense_Mutation p.R602S 0.18 tolerated(0.72) possibly_damaging(0.724) TCGA-55-8301-01 18 22806077 22806077 C A ZNF521 Missense_Mutation p.R602M 0.18 tolerated(0.1) probably_damaging(0.962) TCGA-55-8301-01 18 29848727 29848727 C - GAREM Frame_Shift_Del p.V580Sfs*22 0.15 TCGA-55-8301-01 18 580575 580575 C A CETN1 Missense_Mutation p.A56D 0.27 deleterious(0) probably_damaging(0.975) TCGA-55-8301-01 19 10124201 10124201 A T RDH8 Missense_Mutation p.I30F 0.20 deleterious(0) probably_damaging(0.945) TCGA-55-8301-01 19 16793298 16793298 A T TMEM38A Missense_Mutation p.N178I 0.19 deleterious(0) probably_damaging(1) TCGA-55-8301-01 19 22940782 22940782 A G ZNF99 Silent p.H643H 0.15 TCGA-55-8301-01 19 2877409 2877409 G T ZNF556 Missense_Mutation p.Q151H 0.15 deleterious(0.02) benign(0.15) TCGA-55-8301-01 19 36159435 36159435 C A UPK1A Nonsense_Mutation p.S55* 0.24 TCGA-55-8301-01 19 40196524 40196524 A G LGALS14 5'UTR 0.16 TCGA-55-8301-01 19 40366207 40366207 C G FCGBP Missense_Mutation p.G4676A 0.05 probably_damaging(1) TCGA-55-8301-01 19 42132124 42132124 C A CEACAM4 Missense_Mutation p.G92V 0.04 deleterious(0) probably_damaging(1) TCGA-55-8301-01 19 42132125 42132125 C T CEACAM4 Missense_Mutation p.G92R 0.04 deleterious(0) probably_damaging(0.998) TCGA-55-8301-01 19 42259482 42259482 G C CEACAM6 5'UTR 0.06 TCGA-55-8301-01 19 51671447 51671447 C - CTD-3187F8.14 Intron 0.20 TCGA-55-8301-01 19 52249983 52249983 C T FPR1 Missense_Mutation p.G89R 0.10 tolerated(0.16) possibly_damaging(0.457) TCGA-55-8301-01 19 53612707 53612707 G A ZNF415 Silent p.F197F 0.20 TCGA-55-8301-01 19 53741799 53741799 C A ZNF677 Nonsense_Mutation p.G61* 0.15 TCGA-55-8301-01 19 54200848 54200848 C - MIR525 RNA 0.17 TCGA-55-8301-01 19 54313981 54313981 C A NLRP12 Missense_Mutation p.C311F 0.07 deleterious(0) probably_damaging(0.942) TCGA-55-8301-01 19 8590439 8590439 C A MYO1F Silent p.T926T 0.11 TCGA-55-8301-01 19 9071027 9071027 C G MUC16 Missense_Mutation p.Q5473H 0.18 unknown(0) TCGA-55-8301-01 1 100340295 100340295 A T AGL Missense_Mutation p.Q337H 0.18 deleterious(0.02) benign(0.418) TCGA-55-8301-01 1 11594591 11594591 A C PTCHD2 Missense_Mutation p.I1177L 0.18 tolerated(0.06) possibly_damaging(0.539) TCGA-55-8301-01 1 119964841 119964841 G T HSD3B2 Silent p.L239L 0.10 TCGA-55-8301-01 1 12408888 12408888 A T VPS13D Silent p.S3026S 0.11 TCGA-55-8301-01 1 145562861 145562861 G T ANKRD35 Missense_Mutation p.G850V 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-55-8301-01 1 147087681 147087682 AG - BCL9 Frame_Shift_Del p.R215Kfs*15 0.08 TCGA-55-8301-01 1 152975965 152975965 G A SPRR3 Missense_Mutation p.V157I 0.22 tolerated(0.2) benign(0.354) TCGA-55-8301-01 1 154744803 154744803 T C KCNN3 Missense_Mutation p.I366V 0.14 tolerated(0.09) benign(0.256) TCGA-55-8301-01 1 157803097 157803097 G C CD5L Missense_Mutation p.I308M 0.04 deleterious(0.03) possibly_damaging(0.876) TCGA-55-8301-01 1 158449910 158449910 C A OR10R2 Missense_Mutation p.F81L 0.19 tolerated(0.17) benign(0.206) TCGA-55-8301-01 1 158648266 158648267 - A SPTA1 Frame_Shift_Ins p.W246Lfs*30 0.15 TCGA-55-8301-01 1 158913703 158913703 T A PYHIN1 Missense_Mutation p.C376S 0.22 deleterious(0.01) probably_damaging(1) TCGA-55-8301-01 1 159175442 159175442 G T DARC Silent p.L73L 0.20 TCGA-55-8301-01 1 160924228 160924228 T C ITLN2 Missense_Mutation p.R10G 0.22 tolerated_low_confidence(0.25) benign(0.055) TCGA-55-8301-01 1 16263822 16263822 G T SPEN Silent p.T3397T 0.17 TCGA-55-8301-01 1 166819688 166819688 G T POGK 3'UTR 0.08 TCGA-55-8301-01 1 169541533 169541533 A G F5 Missense_Mutation p.V100A 0.21 deleterious(0) probably_damaging(0.992) TCGA-55-8301-01 1 175049519 175049519 G T TNN Missense_Mutation p.K335N 0.13 deleterious(0.04) probably_damaging(0.965) TCGA-55-8301-01 1 196683047 196683050 AGTA - CFH Splice_Site p.X507_splice 0.14 TCGA-55-8301-01 1 197411345 197411345 G T CRB1 Missense_Mutation p.G1310C 0.28 deleterious(0) probably_damaging(0.996) TCGA-55-8301-01 1 201286816 201286816 C G PKP1 Missense_Mutation p.N321K 0.19 deleterious(0.01) benign(0.201) TCGA-55-8301-01 1 204228506 204228506 C T PLEKHA6 Missense_Mutation p.R296Q 0.05 tolerated(0.08) benign(0.011) TCGA-55-8301-01 1 210267766 210267766 C A SYT14 Missense_Mutation p.P226H 0.20 deleterious(0.05) possibly_damaging(0.693) TCGA-55-8301-01 1 210267767 210267767 C A SYT14 Silent p.P226P 0.20 TCGA-55-8301-01 1 210796994 210796994 G A HHAT Nonsense_Mutation p.W458* 0.07 TCGA-55-8301-01 1 210971081 210971081 C G KCNH1 Missense_Mutation p.D562H 0.23 deleterious(0) probably_damaging(0.962) TCGA-55-8301-01 1 21137268 21137268 T C EIF4G3 Silent p.A1519A 0.08 TCGA-55-8301-01 1 236719206 236719206 C G HEATR1 Missense_Mutation p.E1850Q 0.05 deleterious(0.01) probably_damaging(0.912) TCGA-55-8301-01 1 236849950 236849950 C T ACTN2 5'UTR 0.11 TCGA-55-8301-01 1 241519037 241519037 C G RGS7 Missense_Mutation p.V14L 0.14 tolerated_low_confidence(0.43) benign(0.015) TCGA-55-8301-01 1 247902446 247902446 G A OR14K1 Missense_Mutation p.C177Y 0.23 deleterious(0) probably_damaging(0.998) TCGA-55-8301-01 1 248737730 248737730 A T OR2T34 Missense_Mutation p.L110Q 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-55-8301-01 1 248756672 248756672 G T OR2T10 Missense_Mutation p.S133Y 0.14 deleterious(0) benign(0.284) TCGA-55-8301-01 1 34049329 34049329 C A CSMD2 Missense_Mutation p.V2387L 0.05 tolerated(0.15) benign(0.02) TCGA-55-8301-01 1 36929916 36929916 C T MRPS15 5'UTR 0.20 TCGA-55-8301-01 1 39696915 39696915 G T MACF1 Missense_Mutation p.K94N 0.05 benign(0.036) TCGA-55-8301-01 1 43825658 43825658 A G CDC20 Missense_Mutation p.K149R 0.05 tolerated(0.4) benign(0.008) TCGA-55-8301-01 1 6188662 6188662 C T CHD5 Missense_Mutation p.M1209I 0.13 tolerated_low_confidence(0.2) benign(0.002) TCGA-55-8301-01 1 65730572 65730572 C T DNAJC6 5'UTR 0.15 TCGA-55-8301-01 1 72400830 72400830 C A NEGR1 Missense_Mutation p.G114V 0.13 deleterious(0) probably_damaging(1) TCGA-55-8301-01 1 85573787 85573787 A T WDR63 Missense_Mutation p.E542V 0.20 deleterious(0.01) possibly_damaging(0.808) TCGA-55-8301-01 1 92459693 92459693 G T BRDT Missense_Mutation p.Q723H 0.08 tolerated(0.43) possibly_damaging(0.711) TCGA-55-8301-01 1 93159896 93159896 T A EVI5 Missense_Mutation p.Q364L 0.13 deleterious(0.01) possibly_damaging(0.811) TCGA-55-8301-01 20 13830200 13830200 G A SEL1L2 Silent p.H553H 0.18 TCGA-55-8301-01 20 34571909 34571909 G T CNBD2 Missense_Mutation p.G138V 0.14 deleterious(0) possibly_damaging(0.667) TCGA-55-8301-01 20 37547296 37547296 G T PPP1R16B Missense_Mutation p.C564F 0.06 deleterious(0) probably_damaging(0.999) TCGA-55-8301-01 20 37554981 37554981 G A FAM83D 5'UTR 0.16 TCGA-55-8301-01 20 47674995 47674995 A G CSE1L 5'UTR 0.27 TCGA-55-8301-01 20 60715953 60715955 CTT - PSMA7 In_Frame_Del p.K48del 0.09 TCGA-55-8301-01 20 60888725 60888725 C A LAMA5 Missense_Mutation p.G2880W 0.08 probably_damaging(0.982) TCGA-55-8301-01 21 10951408 10951408 C G TPTE Missense_Mutation p.V102L 0.06 tolerated(0.05) benign(0.009) TCGA-55-8301-01 21 19725370 19725370 C G TMPRSS15 Splice_Site p.X341_splice 0.07 TCGA-55-8301-01 21 31655176 31655176 A G KRTAP24-1 Silent p.Y25Y 0.11 TCGA-55-8301-01 21 31802765 31802765 C - KRTAP13-4 Frame_Shift_Del p.A59Pfs*27 0.12 TCGA-55-8301-01 21 32253651 32253651 C A KRTAP11-1 Missense_Mutation p.A65S 0.20 tolerated(0.82) benign(0.051) TCGA-55-8301-01 21 42647363 42647364 TG - BACE2 Frame_Shift_Del p.V458Pfs*44 0.08 TCGA-55-8301-01 21 45970970 45970970 A G KRTAP10-2 Silent p.S124S 0.19 TCGA-55-8301-01 22 26270379 26270379 A G MYO18B Missense_Mutation p.K1360E 0.22 deleterious(0) probably_damaging(0.999) TCGA-55-8301-01 22 41723341 41723341 C G ZC3H7B Missense_Mutation p.S139R 0.03 tolerated(0.06) possibly_damaging(0.76) TCGA-55-8301-01 22 44585096 44585096 T A PARVG Missense_Mutation p.L117Q 0.04 deleterious(0) probably_damaging(0.997) TCGA-55-8301-01 22 50728577 50728577 C A PLXNB2 Missense_Mutation p.S146I 0.18 deleterious(0) probably_damaging(0.993) TCGA-55-8301-01 2 120387474 120387474 C - PCDP1 Frame_Shift_Del p.P559Qfs*50 0.08 TCGA-55-8301-01 2 125192188 125192188 C A CNTNAP5 Missense_Mutation p.F219L 0.08 tolerated(1) benign(0.075) TCGA-55-8301-01 2 125192189 125192189 C A CNTNAP5 Missense_Mutation p.H220N 0.08 deleterious(0) probably_damaging(0.998) TCGA-55-8301-01 2 125660497 125660497 G A CNTNAP5 Missense_Mutation p.A1158T 0.09 tolerated(0.52) benign(0.002) TCGA-55-8301-01 2 125660517 125660517 C A CNTNAP5 Nonsense_Mutation p.C1164* 0.11 TCGA-55-8301-01 2 128903423 128903423 T C UGGT1 Missense_Mutation p.V633A 0.14 tolerated(0.17) benign(0.103) TCGA-55-8301-01 2 131519854 131519854 C T AMER3 Missense_Mutation p.A70V 0.24 tolerated(0.24) benign(0.022) TCGA-55-8301-01 2 137814577 137814577 C A THSD7B Missense_Mutation p.L243I 0.08 deleterious(0.01) possibly_damaging(0.886) TCGA-55-8301-01 2 137988713 137988713 C A THSD7B Missense_Mutation p.T608K 0.18 deleterious(0.02) possibly_damaging(0.462) TCGA-55-8301-01 2 145157607 145157607 C A ZEB2 Nonsense_Mutation p.E383* 0.16 TCGA-55-8301-01 2 152406213 152406213 A G NEB Silent p.Y6662Y 0.10 TCGA-55-8301-01 2 166172174 166172174 C A SCN2A Nonsense_Mutation p.S526* 0.08 TCGA-55-8301-01 2 170042429 170042429 G T LRP2 Silent p.L3143L 0.13 TCGA-55-8301-01 2 186670844 186670844 C A FSIP2 Missense_Mutation p.S5693Y 0.18 benign(0.055) TCGA-55-8301-01 2 186672999 186672999 G T FSIP2 Silent p.V6411V 0.08 TCGA-55-8301-01 2 198273121 198273121 T G SF3B1 Silent p.P363P 0.11 TCGA-55-8301-01 2 204150334 204150334 G T CYP20A1 Splice_Site p.X284_splice 0.10 TCGA-55-8301-01 2 211542761 211542761 C A CPS1 3'UTR 0.13 TCGA-55-8301-01 2 220379995 220379995 T A ASIC4 Missense_Mutation p.S310R 0.08 tolerated(1) benign(0.284) TCGA-55-8301-01 2 227945184 227945184 C T COL4A4 Missense_Mutation p.G593E 0.04 probably_damaging(0.972) TCGA-55-8301-01 2 232393102 232393102 C A NMUR1 Silent p.R210R 0.13 TCGA-55-8301-01 2 237489276 237489277 - A ACKR3 Frame_Shift_Ins p.I57Nfs*22 0.14 TCGA-55-8301-01 2 26717864 26717864 G A OTOF Silent p.D281D 0.07 TCGA-55-8301-01 2 27359878 27359878 G A C2orf53 3'UTR 0.20 TCGA-55-8301-01 2 29294449 29294449 G - C2orf71 Frame_Shift_Del p.S894Afs*7 0.11 TCGA-55-8301-01 2 31483550 31483550 C A EHD3 Missense_Mutation p.T226K 0.14 tolerated(0.38) benign(0.103) TCGA-55-8301-01 2 43452607 43452607 C T ZFP36L2 Silent p.L112L 0.12 TCGA-55-8301-01 2 88874797 88874797 T C EIF2AK3 Missense_Mutation p.E735G 0.14 tolerated(0.35) benign(0.002) TCGA-55-8301-01 2 90199005 90199005 G T IGKV1D-12 Missense_Mutation p.A56S 0.16 tolerated(0.48) benign(0.009) TCGA-55-8301-01 2 96963260 96963260 C A SNRNP200 Silent p.R406R 0.14 TCGA-55-8301-01 2 96963261 96963261 C A SNRNP200 Missense_Mutation p.R406L 0.14 tolerated(0.06) benign(0.077) TCGA-55-8301-01 2 97526585 97526585 C A SEMA4C Silent p.S760S 0.08 TCGA-55-8301-01 3 101231937 101231937 G A SENP7 Missense_Mutation p.S13F 0.05 deleterious_low_confidence(0.01) benign(0.365) TCGA-55-8301-01 3 121720218 121720218 G A ILDR1 Nonsense_Mutation p.Q195* 0.12 TCGA-55-8301-01 3 130293235 130293235 G C COL6A6 Missense_Mutation p.G1138A 0.17 deleterious(0) probably_damaging(1) TCGA-55-8301-01 3 13363718 13363718 C G NUP210 Silent p.V1630V 0.22 TCGA-55-8301-01 3 138724627 138724627 G C PRR23A Missense_Mutation p.P162A 0.26 tolerated(1) benign(0.018) TCGA-55-8301-01 3 151073733 151073733 C A MED12L Missense_Mutation p.S821Y 0.22 deleterious(0) probably_damaging(0.988) TCGA-55-8301-01 3 154855958 154855958 C A MME Missense_Mutation p.P263H 0.27 deleterious(0.02) benign(0.275) TCGA-55-8301-01 3 154855959 154855959 C T MME Silent p.P263P 0.26 TCGA-55-8301-01 3 178545979 178545979 G C KCNMB2 Missense_Mutation p.E81Q 0.24 tolerated(0.06) probably_damaging(0.996) TCGA-55-8301-01 3 47604138 47604138 A C CSPG5 Silent p.G551G 0.06 TCGA-55-8301-01 3 49083998 49083998 G A QRICH1 Nonsense_Mutation p.R511* 0.07 TCGA-55-8301-01 3 53217541 53217541 G - PRKCD Frame_Shift_Del p.C244Lfs*12 0.14 TCGA-55-8301-01 3 73453385 73453385 G A PDZRN3 Silent p.T360T 0.11 TCGA-55-8301-01 3 99998523 99998523 A C TBC1D23 Silent p.A28A 0.24 TCGA-55-8301-01 4 110639846 110639846 C A PLA2G12A Missense_Mutation p.G93V 0.07 deleterious(0) probably_damaging(1) TCGA-55-8301-01 4 114275786 114275786 T C ANK2 Silent p.S2004S 0.14 TCGA-55-8301-01 4 115773939 115773939 G T NDST4 Silent p.S586S 0.07 TCGA-55-8301-01 4 122789197 122789197 C G BBS7 Missense_Mutation p.G14A 0.14 tolerated(0.12) benign(0.025) TCGA-55-8301-01 4 128719866 128719866 T G HSPA4L Splice_Site p.X143_splice 0.15 TCGA-55-8301-01 4 143326437 143326437 C T INPP4B Silent p.L59L 0.07 TCGA-55-8301-01 4 145916503 145916503 T C ANAPC10 3'UTR 0.17 TCGA-55-8301-01 4 147561824 147561824 C G POU4F2 Missense_Mutation p.A365G 0.06 deleterious(0.02) probably_damaging(0.92) TCGA-55-8301-01 4 155157000 155157000 A T DCHS2 Missense_Mutation p.I2480N 0.12 deleterious(0) probably_damaging(0.969) TCGA-55-8301-01 4 155749304 155749304 C T RBM46 3'UTR 0.15 TCGA-55-8301-01 4 155749306 155749306 G A RBM46 3'UTR 0.12 TCGA-55-8301-01 4 158224768 158224768 T C GRIA2 Silent p.N98N 0.17 TCGA-55-8301-01 4 172735834 172735834 C A GALNTL6 Missense_Mutation p.H35N 0.13 tolerated(0.59) benign(0) TCGA-55-8301-01 4 189068532 189068532 G T TRIML1 3'UTR 0.11 TCGA-55-8301-01 4 59449 59449 G T ZNF595 Missense_Mutation p.G44C 0.02 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-8301-01 4 6335430 6335430 G A PPP2R2C Silent p.N273N 0.15 TCGA-55-8301-01 4 83602034 83602034 C T SCD5 Missense_Mutation p.R132Q 0.04 deleterious(0) probably_damaging(0.999) TCGA-55-8301-01 4 85781564 85781564 C A WDFY3 Splice_Site p.X60_splice 0.11 TCGA-55-8301-01 4 87696350 87696350 G T PTPN13 Missense_Mutation p.M1850I 0.14 deleterious(0.03) benign(0.031) TCGA-55-8301-01 4 88535088 88535088 G T DSPP Missense_Mutation p.G425V 0.12 benign(0.367) TCGA-55-8301-01 5 134102714 134102714 C T DDX46 Missense_Mutation p.S105F 0.05 tolerated(0.12) unknown(0) TCGA-55-8301-01 5 140812215 140812215 G A PCDHGA12 Missense_Mutation p.R630Q 0.05 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-55-8301-01 5 150073716 150073716 T A RBM22 Missense_Mutation p.Q278L 0.16 tolerated(0.17) benign(0.036) TCGA-55-8301-01 5 151239474 151239474 G T GLRA1 Silent p.S116S 0.16 TCGA-55-8301-01 5 151239475 151239475 G A GLRA1 Missense_Mutation p.S116F 0.16 deleterious(0) possibly_damaging(0.763) TCGA-55-8301-01 5 153760164 153760164 A T GALNT10 Missense_Mutation p.Q304L 0.31 tolerated(0.5) possibly_damaging(0.55) TCGA-55-8301-01 5 156593260 156593260 T C FAM71B 5'UTR 0.22 TCGA-55-8301-01 5 158589949 158589949 G A RNF145 Silent p.T450T 0.16 TCGA-55-8301-01 5 161116759 161116759 C A GABRA6 Missense_Mutation p.S216Y 0.17 tolerated(0.14) probably_damaging(0.999) TCGA-55-8301-01 5 16694542 16694542 C T MYO10 Silent p.L1246L 0.13 TCGA-55-8301-01 5 169805926 169805926 C A KCNMB1 Missense_Mutation p.V120L 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-55-8301-01 5 170883658 170883658 G T FGF18 Missense_Mutation p.R158L 0.17 deleterious(0.04) probably_damaging(0.923) TCGA-55-8301-01 5 176918102 176918102 C T PDLIM7 Silent p.L148L 0.09 TCGA-55-8301-01 5 33662027 33662027 A G ADAMTS12 Missense_Mutation p.L345P 0.18 deleterious(0) probably_damaging(0.981) TCGA-55-8301-01 5 35709093 35709093 A T SPEF2 Silent p.A903A 0.11 TCGA-55-8301-01 5 41904560 41904560 G A C5orf51 Missense_Mutation p.G31S 0.16 tolerated(0.12) probably_damaging(0.999) TCGA-55-8301-01 5 79368022 79368022 A C THBS4 Intron 0.22 TCGA-55-8301-01 5 878490 878490 T C BRD9 Silent p.T417T 0.38 TCGA-55-8301-01 5 99871456 99871456 G T FAM174A Silent p.A74A 0.26 TCGA-55-8301-01 6 101847051 101847051 G T GRIK2 5'UTR 0.20 TCGA-55-8301-01 6 106973007 106973007 G C AIM1 Splice_Site p.X1008_splice 0.04 TCGA-55-8301-01 6 123101495 123101495 C G FABP7 Missense_Mutation p.Q45E 0.14 tolerated(0.51) benign(0.034) TCGA-55-8301-01 6 126080826 126080826 G C HEY2 Missense_Mutation p.A298P 0.06 tolerated(0.14) benign(0) TCGA-55-8301-01 6 126080829 126080829 G C HEY2 Missense_Mutation p.A299P 0.06 tolerated(0.23) probably_damaging(0.995) TCGA-55-8301-01 6 129636919 129636919 G - LAMA2 Frame_Shift_Del p.G1251Afs*24 0.18 TCGA-55-8301-01 6 130535667 130535667 T C SAMD3 Silent p.E28E 0.17 TCGA-55-8301-01 6 138199568 138199568 G T TNFAIP3 Splice_Site p.X329_splice 0.14 TCGA-55-8301-01 6 1390523 1390523 A G FOXF2 Missense_Mutation p.Q114R 0.13 tolerated(0.06) possibly_damaging(0.672) TCGA-55-8301-01 6 146121368 146121368 C G FBXO30 Missense_Mutation p.L704F 0.08 deleterious(0) probably_damaging(1) TCGA-55-8301-01 6 159655020 159655020 C A FNDC1 Nonsense_Mutation p.S1159* 0.30 TCGA-55-8301-01 6 160679560 160679560 C A SLC22A2 Missense_Mutation p.G77V 0.06 tolerated(0.27) probably_damaging(0.931) TCGA-55-8301-01 6 29798162 29798162 A T HLA-G 3'UTR 0.09 TCGA-55-8301-01 6 31540560 31540560 G T LTA Missense_Mutation p.G14V 0.13 deleterious(0.03) possibly_damaging(0.659) TCGA-55-8301-01 6 40400506 40400506 C A LRFN2 Missense_Mutation p.G116V 0.15 tolerated(0.08) possibly_damaging(0.833) TCGA-55-8301-01 6 41739000 41739000 C T FRS3 Missense_Mutation p.C279Y 0.09 tolerated(0.21) possibly_damaging(0.759) TCGA-55-8301-01 6 46133288 46133288 T C ENPP5 Missense_Mutation p.E281G 0.04 tolerated(0.08) possibly_damaging(0.828) TCGA-55-8301-01 6 56917659 56917659 C T KIAA1586 Missense_Mutation p.S121L 0.06 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-55-8301-01 6 57055324 57055324 G A RAB23 Missense_Mutation p.L217F 0.11 deleterious(0.01) probably_damaging(0.976) TCGA-55-8301-01 6 69772871 69772871 G T BAI3 Missense_Mutation p.R793S 0.17 deleterious(0.01) benign(0.308) TCGA-55-8301-01 6 71571628 71571628 G T B3GAT2 Missense_Mutation p.R264S 0.20 tolerated(0.4) probably_damaging(0.933) TCGA-55-8301-01 6 76660521 76660521 G T IMPG1 Missense_Mutation p.P528T 0.25 deleterious(0.04) benign(0.051) TCGA-55-8301-01 6 97246425 97246425 G T GPR63 Missense_Mutation p.Q395K 0.07 tolerated(1) benign(0) TCGA-55-8301-01 7 112724262 112724262 C A GPR85 Missense_Mutation p.C172F 0.16 deleterious(0) probably_damaging(1) TCGA-55-8301-01 7 117003755 117003755 T C ASZ1 Silent p.E441E 0.17 TCGA-55-8301-01 7 126086209 126086209 C A GRM8 Missense_Mutation p.S883I 0.17 tolerated(0.05) benign(0.015) TCGA-55-8301-01 7 134870881 134870881 G T WDR91 3'UTR 0.13 TCGA-55-8301-01 7 142013025 142013025 C A TRBV4-1 5'UTR 0.07 TCGA-55-8301-01 7 142836721 142836721 C A PIP Missense_Mutation p.L143I 0.31 tolerated(0.1) benign(0.156) TCGA-55-8301-01 7 148464720 148464720 G T CUL1 Missense_Mutation p.R321L 0.14 deleterious(0) benign(0.266) TCGA-55-8301-01 7 148768585 148768587 AGG - ZNF786 In_Frame_Del p.S426del 0.10 TCGA-55-8301-01 7 150695715 150695715 C A NOS3 Silent p.R255R 0.08 TCGA-55-8301-01 7 151970820 151970820 G T KMT2C Missense_Mutation p.P328T 0.03 probably_damaging(1) TCGA-55-8301-01 7 158325480 158325480 G T PTPRN2 Intron 0.12 TCGA-55-8301-01 7 158325481 158325481 G T PTPRN2 Intron 0.13 TCGA-55-8301-01 7 17349607 17349607 G C AHR Missense_Mutation p.R38P 0.14 deleterious(0) probably_damaging(1) TCGA-55-8301-01 7 26709737 26709737 C T SKAP2 Missense_Mutation p.M354I 0.17 tolerated(0.23) benign(0.012) TCGA-55-8301-01 7 29726911 29726911 G T DPY19L2P3 RNA 0.09 TCGA-55-8301-01 7 29726912 29726912 G T DPY19L2P3 RNA 0.09 TCGA-55-8301-01 7 31617525 31617525 C T CCDC129 Missense_Mutation p.S242L 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-8301-01 7 34888169 34888169 G T NPSR1 Nonsense_Mutation p.E307* 0.19 TCGA-55-8301-01 7 43447277 43447277 G T HECW1 Nonsense_Mutation p.E250* 0.07 TCGA-55-8301-01 7 44282253 44282253 C G CAMK2B Missense_Mutation p.G201A 0.12 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-55-8301-01 7 48338012 48338012 G C ABCA13 Missense_Mutation p.E3083D 0.16 benign(0.022) TCGA-55-8301-01 7 78256510 78256510 T C MAGI2 Missense_Mutation p.Y155C 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-8301-01 7 89874783 89874783 C T C7orf63 Silent p.S15S 0.03 TCGA-55-8301-01 7 92987735 92987735 G C CCDC132 Missense_Mutation p.R961T 0.05 deleterious(0.01) possibly_damaging(0.629) TCGA-55-8301-01 7 99755337 99755337 C G C7orf43 Missense_Mutation p.D186H 0.03 deleterious(0.01) probably_damaging(0.979) TCGA-55-8301-01 8 106814435 106814435 T A ZFPM2 Missense_Mutation p.Y709N 0.05 deleterious(0) probably_damaging(0.999) TCGA-55-8301-01 8 10782281 10782281 C A XKR6 Missense_Mutation p.R275L 0.17 deleterious(0) probably_damaging(0.976) TCGA-55-8301-01 8 113348966 113348966 G T CSMD3 Missense_Mutation p.L2312I 0.11 deleterious(0.05) benign(0.013) TCGA-55-8301-01 8 139165090 139165090 G A FAM135B Missense_Mutation p.P543L 0.07 tolerated(0.17) benign(0.295) TCGA-55-8301-01 8 144523112 144523112 C G ZC3H3 Missense_Mutation p.G829A 0.51 tolerated(0.15) benign(0.038) TCGA-55-8301-01 8 145947717 145947717 C A ZNF251 Missense_Mutation p.R443L 0.38 deleterious(0.02) benign(0) TCGA-55-8301-01 8 145948486 145948486 C G ZNF251 Missense_Mutation p.D187H 0.03 tolerated(0.07) possibly_damaging(0.861) TCGA-55-8301-01 8 17159551 17159551 G T MTMR7 Intron 0.15 TCGA-55-8301-01 8 24188830 24188830 G T ADAM28 Missense_Mutation p.G424V 0.24 deleterious(0) probably_damaging(1) TCGA-55-8301-01 8 30938807 30938807 A T WRN Missense_Mutation p.T422S 0.13 tolerated(0.49) benign(0.001) TCGA-55-8301-01 8 31498053 31498053 C A NRG1 Missense_Mutation p.L38M 0.08 tolerated_low_confidence(0.17) possibly_damaging(0.557) TCGA-55-8301-01 8 62415898 62415899 - A ASPH 3'UTR 0.12 TCGA-55-8301-01 8 72973958 72973958 C T TRPA1 Silent p.Q282Q 0.10 TCGA-55-8301-01 8 77776618 77776618 A G ZFHX4 Silent p.S3556S 0.12 TCGA-55-8301-01 8 88365914 88365914 C A CNBD1 Silent p.S401S 0.20 TCGA-55-8301-01 8 89209495 89209495 G A MMP16 Missense_Mutation p.P58L 0.08 tolerated(0.7) probably_damaging(0.959) TCGA-55-8301-01 8 92052930 92052930 G A TMEM55A Silent p.S16S 0.13 TCGA-55-8301-01 8 99129340 99129340 C G HRSP12 5'UTR 0.08 TCGA-55-8301-01 9 101235488 101235488 G T GABBR2 Silent p.G313G 0.16 TCGA-55-8301-01 9 129595930 129595930 T A ZBTB43 Missense_Mutation p.F381Y 0.20 deleterious(0) possibly_damaging(0.722) TCGA-55-8301-01 9 130653279 130653279 G C ST6GALNAC6 Missense_Mutation p.S114C 0.05 probably_damaging(0.992) TCGA-55-8301-01 9 134346355 134346355 G T PRRC2B Missense_Mutation p.A698S 0.24 tolerated(0.35) benign(0.021) TCGA-55-8301-01 9 136269060 136269060 G A C9orf96 Silent p.Q540Q 0.23 TCGA-55-8301-01 9 139391292 139391292 C A NOTCH1 Missense_Mutation p.G2300V 0.23 tolerated(0.45) benign(0.23) TCGA-55-8301-01 9 139718065 139718065 C T RABL6 Silent p.I73I 0.11 TCGA-55-8301-01 9 14808014 14808014 A G FREM1 Silent p.L1004L 0.17 TCGA-55-8301-01 9 32630359 32630359 C A TAF1L Missense_Mutation p.G1740V 0.16 deleterious_low_confidence(0.04) benign(0.002) TCGA-55-8301-01 9 37745760 37745760 G C FRMPD1 Missense_Mutation p.S1244T 0.04 tolerated_low_confidence(1) benign(0) TCGA-55-8301-01 9 396858 396858 G A DOCK8 Missense_Mutation p.R1015H 0.04 tolerated(0.07) probably_damaging(0.985) TCGA-55-8301-01 X 102612717 102612717 A G WBP5 Silent p.L35L 0.33 TCGA-55-8301-01 X 107167715 107167715 T C MID2 Silent p.P526P 0.26 TCGA-55-8301-01 X 118222136 118222136 G T KIAA1210 Silent p.P1019P 0.38 TCGA-55-8301-01 X 127186009 127186009 T A ACTRT1 Missense_Mutation p.Q59H 0.34 deleterious(0.01) benign(0.167) TCGA-55-8301-01 X 150154626 150154628 AAG - HMGB3 In_Frame_Del p.K88del 0.29 TCGA-55-8301-01 X 49070320 49070320 C A CACNA1F Missense_Mutation p.V1262L 0.28 deleterious(0.02) benign(0.379) TCGA-55-8301-01 X 49161410 49161410 G T GAGE10 Silent p.G24G 0.34 TCGA-55-8301-01 X 53438821 53438823 CTT - SMC1A In_Frame_Del p.E381del 0.29 TCGA-55-8301-01 X 78216865 78216865 C T P2RY10 Missense_Mutation p.A283V 0.35 tolerated(0.59) benign(0.004) TCGA-55-8301-01 X 85218821 85218821 T C CHM Missense_Mutation p.D184G 0.04 tolerated(0.18) benign(0.106) TCGA-55-8301-01 Y 3448043 3448043 C T TGIF2LY 3'UTR 0.10 TCGA-55-8301-01 Y 5605530 5605530 C A PCDH11Y Missense_Mutation p.H1190Q 0.35 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-55-8302-01 10 100185661 100185661 C A HPS1 Missense_Mutation p.V357L 0.36 tolerated(1) benign(0.02) TCGA-55-8302-01 10 102242544 102242544 G A WNT8B Missense_Mutation p.A343T 0.22 tolerated_low_confidence(0.58) benign(0.002) TCGA-55-8302-01 10 106959806 106959806 G A SORCS3 Missense_Mutation p.D687N 0.18 deleterious(0.01) possibly_damaging(0.589) TCGA-55-8302-01 10 106970917 106970917 G - SORCS3 Frame_Shift_Del p.E763Rfs*43 0.23 TCGA-55-8302-01 10 112635747 112635747 G T PDCD4 5'UTR 0.37 TCGA-55-8302-01 10 115337879 115337879 G T HABP2 Missense_Mutation p.Q181H 0.15 tolerated(0.17) benign(0.014) TCGA-55-8302-01 10 115348730 115348730 T A NRAP 3'UTR 0.38 TCGA-55-8302-01 10 118389574 118389574 G A PNLIPRP2 Splice_Site p.X233_splice 0.33 TCGA-55-8302-01 10 118440693 118440693 C T HSPA12A Missense_Mutation p.G333R 0.12 deleterious(0.02) benign(0.183) TCGA-55-8302-01 10 120460919 120460919 T A CACUL1 Missense_Mutation p.N232I 0.20 deleterious(0) probably_damaging(0.995) TCGA-55-8302-01 10 121619312 121619312 C A MCMBP Missense_Mutation p.W48L 0.11 tolerated(0.51) benign(0.015) TCGA-55-8302-01 10 124691998 124691998 C A C10orf88 Missense_Mutation p.G428V 0.23 deleterious(0.03) probably_damaging(0.993) TCGA-55-8302-01 10 124691999 124691999 C T C10orf88 Missense_Mutation p.G428R 0.22 tolerated(0.53) probably_damaging(0.992) TCGA-55-8302-01 10 124920023 124920023 G C BUB3 Missense_Mutation p.R173P 0.13 deleterious(0.01) benign(0.11) TCGA-55-8302-01 10 125805632 125805632 C A CHST15 Missense_Mutation p.A33S 0.27 tolerated_low_confidence(0.72) benign(0.003) TCGA-55-8302-01 10 131755569 131755569 A T EBF3 Missense_Mutation p.S169R 0.16 deleterious(0) probably_damaging(0.973) TCGA-55-8302-01 10 134743096 134743096 C A TTC40 Intron 0.18 TCGA-55-8302-01 10 17362929 17362929 A T ST8SIA6 Missense_Mutation p.L382H 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-8302-01 10 17949651 17949651 T C MRC1L1 Missense_Mutation p.S1339P 0.35 probably_damaging(0.937) TCGA-55-8302-01 10 26310478 26310478 G T MYO3A Missense_Mutation p.C211F 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-8302-01 10 26508071 26508071 C G GAD2 Nonsense_Mutation p.S129* 0.09 TCGA-55-8302-01 10 27493448 27493448 G A ACBD5 Missense_Mutation p.P496S 0.06 deleterious(0.01) probably_damaging(1) TCGA-55-8302-01 10 27702746 27702746 G T PTCHD3 Missense_Mutation p.P145H 0.17 deleterious(0) probably_damaging(0.995) TCGA-55-8302-01 10 33542985 33542985 C A NRP1 Nonsense_Mutation p.G318* 0.17 TCGA-55-8302-01 10 38121474 38121474 T C ZNF248 Missense_Mutation p.Y270C 0.10 tolerated(0.11) benign(0.002) TCGA-55-8302-01 10 43288463 43288463 T G BMS1 Silent p.P320P 0.06 TCGA-55-8302-01 10 43601832 43601832 G A RET Silent p.V292V 0.29 TCGA-55-8302-01 10 43650897 43650897 G T CSGALNACT2 Missense_Mutation p.R100S 0.30 tolerated(0.53) benign(0.061) TCGA-55-8302-01 10 43882716 43882716 C G HNRNPF Missense_Mutation p.R206P 0.15 deleterious(0.04) benign(0.195) TCGA-55-8302-01 10 50870705 50870705 G T CHAT Missense_Mutation p.M618I 0.17 tolerated(0.35) probably_damaging(0.916) TCGA-55-8302-01 10 51225516 51225516 C A AGAP8 Missense_Mutation p.R489L 0.18 deleterious(0) possibly_damaging(0.527) TCGA-55-8302-01 10 55755429 55755429 C A PCDH15 Missense_Mutation p.A950S 0.09 deleterious(0) probably_damaging(1) TCGA-55-8302-01 10 56077120 56077120 G T PCDH15 Missense_Mutation p.P263T 0.11 deleterious(0) probably_damaging(1) TCGA-55-8302-01 10 61413486 61413486 C A SLC16A9 Missense_Mutation p.G433V 0.34 deleterious(0) probably_damaging(1) TCGA-55-8302-01 10 61822944 61822944 T C ANK3 Missense_Mutation p.I4174V 0.14 probably_damaging(0.963) TCGA-55-8302-01 10 68687879 68687879 C A LRRTM3 Missense_Mutation p.T402K 0.10 tolerated(0.52) benign(0.055) TCGA-55-8302-01 10 71874072 71874072 G A AIFM2 Silent p.F328F 0.32 TCGA-55-8302-01 10 74618994 74618995 - T MCU Frame_Shift_Ins p.R94Lfs*2 0.24 TCGA-55-8302-01 10 75407505 75407505 C G SYNPO2L Missense_Mutation p.Q635H 0.21 deleterious(0.01) probably_damaging(0.949) TCGA-55-8302-01 10 79572022 79572022 C A DLG5 Missense_Mutation p.G1380V 0.30 deleterious(0) probably_damaging(1) TCGA-55-8302-01 10 88425525 88425525 C A OPN4 3'UTR 0.23 TCGA-55-8302-01 10 92617180 92617180 C G HTR7 Silent p.V83V 0.25 TCGA-55-8302-01 10 93596719 93596719 G T TNKS2 Silent p.L497L 0.09 TCGA-55-8302-01 10 93608352 93608352 A T TNKS2 Silent p.S857S 0.05 TCGA-55-8302-01 10 93749271 93749271 G T BTAF1 Missense_Mutation p.D930Y 0.10 deleterious(0) probably_damaging(0.971) TCGA-55-8302-01 10 95389038 95389038 T C PDE6C Silent p.P365P 0.26 TCGA-55-8302-01 10 95556801 95556801 C G LGI1 Silent p.G305G 0.23 TCGA-55-8302-01 10 97919645 97919645 C A ZNF518A RNA 0.29 TCGA-55-8302-01 10 98820481 98820481 C A SLIT1 Missense_Mutation p.C286F 0.35 deleterious(0) probably_damaging(1) TCGA-55-8302-01 11 113141053 113141053 C A NCAM1 Missense_Mutation p.L808M 0.06 tolerated(0.06) possibly_damaging(0.859) TCGA-55-8302-01 11 114121311 114121311 G T ZBTB16 3'UTR 0.25 TCGA-55-8302-01 11 116629850 116629850 C G BUD13 Missense_Mutation p.D434H 0.05 deleterious(0) possibly_damaging(0.77) TCGA-55-8302-01 11 119549454 119549454 T A PVRL1 Missense_Mutation p.Q34L 0.18 tolerated(0.36) benign(0.003) TCGA-55-8302-01 11 12315837 12315837 A T MICALCL Missense_Mutation p.N287Y 0.24 deleterious(0) possibly_damaging(0.786) TCGA-55-8302-01 11 123471227 123471227 C A GRAMD1B Silent p.R198R 0.27 TCGA-55-8302-01 11 123900559 123900559 C A OR10G8 Missense_Mutation p.P77H 0.10 deleterious(0) probably_damaging(1) TCGA-55-8302-01 11 124180591 124180591 C A OR8D1 Missense_Mutation p.Q24H 0.08 deleterious(0.01) possibly_damaging(0.867) TCGA-55-8302-01 11 124266638 124266638 C A OR8B3 Missense_Mutation p.G204C 0.28 deleterious_low_confidence(0.02) probably_damaging(0.984) TCGA-55-8302-01 11 124294049 124294049 C T OR8B4 Nonsense_Mutation p.W240* 0.09 TCGA-55-8302-01 11 124294421 124294421 G A OR8B4 Missense_Mutation p.S116L 0.34 deleterious_low_confidence(0.04) probably_damaging(0.991) TCGA-55-8302-01 11 128680998 128680998 C G FLI1 3'UTR 0.10 TCGA-55-8302-01 11 16119220 16119220 C T SOX6 Missense_Mutation p.V305I 0.21 deleterious(0.02) possibly_damaging(0.527) TCGA-55-8302-01 11 26669338 26669338 C A ANO3 Nonsense_Mutation p.Y837* 0.25 TCGA-55-8302-01 11 27390070 27390070 T A LGR4 Nonsense_Mutation p.K734* 0.07 TCGA-55-8302-01 11 32450127 32450127 C A WT1 Missense_Mutation p.G229C 0.35 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-55-8302-01 11 34149145 34149145 G T NAT10 Missense_Mutation p.G415C 0.08 deleterious(0) probably_damaging(0.998) TCGA-55-8302-01 11 35463054 35463054 T A PAMR1 Silent p.S353S 0.06 TCGA-55-8302-01 11 3661405 3661405 G A ART5 Missense_Mutation p.P85L 0.35 deleterious(0) probably_damaging(1) TCGA-55-8302-01 11 4076784 4076784 A T STIM1 Silent p.V138V 0.32 TCGA-55-8302-01 11 4406953 4406953 C A TRIM21 Missense_Mutation p.M330I 0.19 tolerated(0.51) benign(0.034) TCGA-55-8302-01 11 48510424 48510424 T C OR4A47 Missense_Mutation p.V27A 0.14 tolerated_low_confidence(0.2) benign(0.011) TCGA-55-8302-01 11 49831294 49831294 T G RP11-707M1.1 Intron 0.12 TCGA-55-8302-01 11 5067974 5067974 G T OR52J3 Missense_Mutation p.L73F 0.26 deleterious(0) probably_damaging(0.938) TCGA-55-8302-01 11 5363856 5363856 G T OR51B5 Missense_Mutation p.A300D 0.06 tolerated(0.56) benign(0.003) TCGA-55-8302-01 11 5410739 5410739 C A OR51M1 Missense_Mutation p.H37Q 0.11 tolerated(0.29) benign(0.063) TCGA-55-8302-01 11 55038465 55038465 G T TRIM48 3'UTR 0.26 TCGA-55-8302-01 11 55322591 55322591 C T OR4C15 Missense_Mutation p.S270F 0.08 deleterious_low_confidence(0) possibly_damaging(0.586) TCGA-55-8302-01 11 55606761 55606761 T C OR5D16 Silent p.H178H 0.18 TCGA-55-8302-01 11 55659167 55659167 C T TRIM51 3'UTR 0.24 TCGA-55-8302-01 11 55861154 55861154 T A OR8I2 Missense_Mutation p.I124K 0.34 deleterious(0) benign(0.042) TCGA-55-8302-01 11 57958230 57958230 A T OR9Q2 Missense_Mutation p.T90S 0.08 tolerated(0.12) benign(0.002) TCGA-55-8302-01 11 57982271 57982271 C A OR1S1 Missense_Mutation p.Q19K 0.07 deleterious(0.03) benign(0.011) TCGA-55-8302-01 11 5809159 5809159 C A OR52N1 Silent p.G296G 0.23 TCGA-55-8302-01 11 60974989 60974989 C A PGA3 Missense_Mutation p.P120T 0.14 deleterious(0) probably_damaging(0.997) TCGA-55-8302-01 11 62189754 62189754 C T SCGB1A1 Silent p.P39P 0.19 TCGA-55-8302-01 11 6260437 6260437 A G CNGA4 Translation_Start_Site p.M1? 0.08 tolerated_low_confidence(0.16) benign(0.021) TCGA-55-8302-01 11 64137852 64137852 C - RPS6KA4 Frame_Shift_Del p.R652Efs*4 0.10 TCGA-55-8302-01 11 64360259 64360259 C A SLC22A12 Silent p.L137L 0.07 TCGA-55-8302-01 11 64360302 64360302 T A SLC22A12 Missense_Mutation p.Y152N 0.07 deleterious(0) probably_damaging(0.989) TCGA-55-8302-01 11 66444353 66444353 G A RBM4B Silent p.N66N 0.24 TCGA-55-8302-01 11 66888716 66888716 G T KDM2A 5'UTR 0.20 TCGA-55-8302-01 11 67219091 67219091 C G GPR152 Missense_Mutation p.D369H 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.472) TCGA-55-8302-01 11 70277324 70277324 C - CTTN Frame_Shift_Del p.P366Lfs*29 0.24 TCGA-55-8302-01 11 7063962 7063962 G T NLRP14 Missense_Mutation p.K235N 0.20 tolerated(0.11) benign(0.257) TCGA-55-8302-01 11 88301113 88301113 G T GRM5 Missense_Mutation p.P580T 0.25 tolerated(0.44) probably_damaging(0.999) TCGA-55-8302-01 12 101603361 101603361 G T SLC5A8 Missense_Mutation p.A89D 0.32 tolerated(0.05) benign(0.278) TCGA-55-8302-01 12 107393832 107393832 C G CRY1 Missense_Mutation p.R238P 0.09 deleterious(0) probably_damaging(0.974) TCGA-55-8302-01 12 108618551 108618551 C A WSCD2 Missense_Mutation p.P240T 0.05 deleterious(0.05) probably_damaging(1) TCGA-55-8302-01 12 111296407 111296407 T A CCDC63 Missense_Mutation p.L66Q 0.07 deleterious(0) probably_damaging(1) TCGA-55-8302-01 12 113325608 113325608 C A RPH3A Silent p.S481S 0.32 TCGA-55-8302-01 12 119583250 119583250 G C SRRM4 Missense_Mutation p.R279P 0.52 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-55-8302-01 12 131487747 131487747 G T GPR133 Silent p.L348L 0.08 TCGA-55-8302-01 12 133234016 133234016 C A POLE Splice_Site p.X1127_splice 0.38 TCGA-55-8302-01 12 20874769 20874769 G T SLCO1C1 Missense_Mutation p.Q269H 0.14 deleterious(0.01) benign(0.14) TCGA-55-8302-01 12 21721925 21721925 C A GYS2 Missense_Mutation p.A233S 0.25 deleterious(0.03) possibly_damaging(0.664) TCGA-55-8302-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.31 deleterious(0.04) probably_damaging(0.993) TCGA-55-8302-01 12 27573404 27573405 - AGAAGCAG ARNTL2 Frame_Shift_Ins p.G621Kfs*22 0.16 TCGA-55-8302-01 12 32832246 32832246 C - DNM1L 5'UTR 0.50 TCGA-55-8302-01 12 33559973 33559973 A T SYT10 Silent p.L276L 0.05 TCGA-55-8302-01 12 40012807 40012807 G T ABCD2 Missense_Mutation p.A204E 0.43 tolerated(0.87) benign(0.101) TCGA-55-8302-01 12 43826255 43826255 C - ADAMTS20 Frame_Shift_Del p.G983Efs*12 0.24 TCGA-55-8302-01 12 4736536 4736536 T C AKAP3 Missense_Mutation p.E511G 0.31 deleterious(0) probably_damaging(0.968) TCGA-55-8302-01 12 52115610 52115610 G C SCN8A Missense_Mutation p.R639P 0.34 tolerated(0.31) probably_damaging(0.953) TCGA-55-8302-01 12 53096689 53096689 G T KRT77 Missense_Mutation p.S177Y 0.05 deleterious(0) probably_damaging(0.992) TCGA-55-8302-01 12 56625202 56625202 C A SLC39A5 Silent p.G48G 0.35 TCGA-55-8302-01 12 56755897 56755897 C A APOF Silent p.L31L 0.29 TCGA-55-8302-01 12 57843251 57843251 C G INHBC Missense_Mutation p.L169V 0.47 tolerated(0.59) benign(0.029) TCGA-55-8302-01 12 57861953 57861953 G T GLI1 Silent p.R418R 0.44 TCGA-55-8302-01 12 57969018 57969018 G T KIF5A Missense_Mutation p.G623V 0.47 tolerated(0.06) possibly_damaging(0.845) TCGA-55-8302-01 12 6932939 6932939 G T GPR162 5'UTR 0.37 TCGA-55-8302-01 12 72317005 72317005 G C TBC1D15 3'UTR 0.11 TCGA-55-8302-01 12 7548916 7548916 C G CD163L1 Missense_Mutation p.D609H 0.41 tolerated(0.13) probably_damaging(0.988) TCGA-55-8302-01 12 81777879 81777879 G T PPFIA2 Missense_Mutation p.Q303K 0.06 deleterious(0.03) benign(0.089) TCGA-55-8302-01 12 83526012 83526012 G T TMTC2 Silent p.L785L 0.33 TCGA-55-8302-01 12 85445952 85445952 C A LRRIQ1 Intron 0.29 TCGA-55-8302-01 12 99166883 99166883 G - ANKS1B Frame_Shift_Del p.Y1148Ifs*6 0.32 TCGA-55-8302-01 13 101287379 101287379 C T TMTC4 Missense_Mutation p.G425S 0.30 deleterious(0) probably_damaging(0.999) TCGA-55-8302-01 13 27255276 27255276 G T WASF3 Missense_Mutation p.A268S 0.07 tolerated(0.82) benign(0.002) TCGA-55-8302-01 13 35683514 35683514 T C NBEA Silent p.L590L 0.18 TCGA-55-8302-01 13 46942216 46942216 C G KIAA0226L Missense_Mutation p.E263Q 0.20 tolerated(0.13) benign(0.141) TCGA-55-8302-01 13 84453908 84453908 G T SLITRK1 Missense_Mutation p.P579T 0.23 deleterious(0) possibly_damaging(0.902) TCGA-55-8302-01 13 86368171 86368171 C A SLITRK6 Missense_Mutation p.A825S 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-55-8302-01 13 88328732 88328732 C T SLITRK5 Silent p.A363A 0.21 TCGA-55-8302-01 13 92002883 92002887 CAGTG - MIR17HG RNA 0.13 TCGA-55-8302-01 13 92346130 92346130 G T GPC5 Nonsense_Mutation p.E339* 0.24 TCGA-55-8302-01 13 96515883 96515883 C A UGGT2 Missense_Mutation p.S1215I 0.19 deleterious(0.01) benign(0.219) TCGA-55-8302-01 14 101439036 101439036 G T SNORD114-15 RNA 0.11 TCGA-55-8302-01 14 104641824 104641824 G T KIF26A Missense_Mutation p.R900L 0.29 tolerated(0.14) benign(0.005) TCGA-55-8302-01 14 106110251 106110251 G A IGHG2 Missense_Mutation p.P123S 0.14 deleterious(0) probably_damaging(0.99) TCGA-55-8302-01 14 106963354 106963354 A G IGHV1-45 Missense_Mutation p.W5R 0.11 deleterious(0.01) probably_damaging(0.92) TCGA-55-8302-01 14 107095226 107095226 T C IGHV4-61 Missense_Mutation p.K85R 0.07 deleterious(0.04) benign(0.042) TCGA-55-8302-01 14 20216297 20216297 C A OR4Q3 Silent p.V237V 0.04 TCGA-55-8302-01 14 20837502 20837502 C A TEP1 Splice_Site p.X2552_splice 0.08 TCGA-55-8302-01 14 20873650 20873650 C A TEP1 Missense_Mutation p.C277F 0.10 deleterious(0) probably_damaging(1) TCGA-55-8302-01 14 21458103 21458103 G C METTL17 5'Flank 0.09 TCGA-55-8302-01 14 22573858 22573858 G T TRAV24 Silent p.V26V 0.20 TCGA-55-8302-01 14 22675815 22675815 T A TRAV34 Missense_Mutation p.C43S 0.23 deleterious(0) probably_damaging(0.997) TCGA-55-8302-01 14 24661851 24661851 C A TM9SF1 Intron 0.12 TCGA-55-8302-01 14 24701553 24701553 T A NEDD8 5'UTR 0.14 TCGA-55-8302-01 14 24787985 24787985 C A ADCY4 Splice_Site p.X986_splice 0.29 TCGA-55-8302-01 14 33291320 33291320 G C AKAP6 Missense_Mutation p.G1434A 0.23 tolerated_low_confidence(0.35) benign(0.062) TCGA-55-8302-01 14 33291826 33291826 T A AKAP6 Missense_Mutation p.Y1603N 0.14 deleterious(0.01) probably_damaging(0.972) TCGA-55-8302-01 14 42360586 42360586 C T LRFN5 Nonsense_Mutation p.Q507* 0.10 TCGA-55-8302-01 14 44974893 44974893 G T FSCB Missense_Mutation p.P433H 0.10 tolerated(0.05) benign(0.307) TCGA-55-8302-01 14 45658332 45658332 C T FANCM Missense_Mutation p.H1703Y 0.12 tolerated(0.15) benign(0.05) TCGA-55-8302-01 14 50649178 50649178 T C SOS2 Intron 0.08 TCGA-55-8302-01 14 52520612 52520612 C T NID2 Missense_Mutation p.G372R 0.17 tolerated(0.57) benign(0.002) TCGA-55-8302-01 14 52734991 52734991 C A PTGDR Silent p.A153A 0.13 TCGA-55-8302-01 14 53150549 53150549 C A ERO1L Missense_Mutation p.R64I 0.23 tolerated(0.07) possibly_damaging(0.878) TCGA-55-8302-01 14 55817636 55817636 A T FBXO34 Missense_Mutation p.Q176H 0.29 tolerated(0.05) possibly_damaging(0.839) TCGA-55-8302-01 14 55817637 55817637 C G FBXO34 Missense_Mutation p.P177A 0.29 deleterious(0.04) possibly_damaging(0.65) TCGA-55-8302-01 14 57684779 57684779 G A EXOC5 Missense_Mutation p.P512S 0.14 tolerated(0.18) possibly_damaging(0.585) TCGA-55-8302-01 14 62547784 62547784 G T SYT16 Missense_Mutation p.G409V 0.17 deleterious(0) probably_damaging(0.966) TCGA-55-8302-01 14 63174777 63174777 C A KCNH5 Nonsense_Mutation p.G806* 0.14 TCGA-55-8302-01 14 68193706 68193706 C A RDH12 Missense_Mutation p.L153I 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-8302-01 14 69787440 69787440 C A GALNT16 Missense_Mutation p.P64T 0.10 tolerated(0.14) possibly_damaging(0.756) TCGA-55-8302-01 14 70633727 70633727 G A SLC8A3 Silent p.D471D 0.13 TCGA-55-8302-01 14 70635063 70635063 T C SLC8A3 Missense_Mutation p.N26S 0.09 tolerated_low_confidence(0.84) benign(0.027) TCGA-55-8302-01 14 74401001 74401001 C T FAM161B Silent p.E697E 0.06 TCGA-55-8302-01 14 76928949 76928949 G A ESRRB Silent p.K153K 0.14 TCGA-55-8302-01 14 81969145 81969145 C A SEL1L Missense_Mutation p.D233Y 0.08 tolerated(0.05) benign(0.078) TCGA-55-8302-01 14 89181511 89181511 C A EML5 Missense_Mutation p.D406Y 0.14 deleterious(0) probably_damaging(0.987) TCGA-55-8302-01 14 94700023 94700023 T A PPP4R4 Missense_Mutation p.S184T 0.13 deleterious(0) probably_damaging(0.981) TCGA-55-8302-01 14 94756360 94756360 C T SERPINA10 Missense_Mutation p.V191M 0.12 tolerated(0.07) probably_damaging(0.952) TCGA-55-8302-01 14 96807962 96807962 A C ATG2B Nonsense_Mutation p.L274* 0.24 TCGA-55-8302-01 14 97321675 97321675 G A VRK1 Missense_Mutation p.D231N 0.23 deleterious(0) probably_damaging(0.994) TCGA-55-8302-01 14 99641705 99641705 C T BCL11B Missense_Mutation p.D490N 0.16 deleterious(0.04) probably_damaging(0.921) TCGA-55-8302-01 15 100821599 100821599 C A ADAMTS17 Missense_Mutation p.K208N 0.11 tolerated(0.1) benign(0.253) TCGA-55-8302-01 15 101597206 101597206 G T LRRK1 Missense_Mutation p.R1493L 0.12 tolerated(0.6) benign(0.049) TCGA-55-8302-01 15 101853660 101853660 C A PCSK6 Missense_Mutation p.D873Y 0.06 deleterious(0) possibly_damaging(0.846) TCGA-55-8302-01 15 102182765 102182765 C A TM2D3 Missense_Mutation p.G221C 0.07 deleterious(0) probably_damaging(1) TCGA-55-8302-01 15 20649543 20649543 G T HERC2P3 RNA 0.34 TCGA-55-8302-01 15 23811096 23811096 C A MKRN3 Missense_Mutation p.A56D 0.09 tolerated(0.07) benign(0.11) TCGA-55-8302-01 15 24922901 24922901 C A NPAP1 Missense_Mutation p.H629Q 0.10 tolerated(0.59) benign(0.327) TCGA-55-8302-01 15 26825468 26825468 G T GABRB3 Missense_Mutation p.T227K 0.13 deleterious(0) possibly_damaging(0.876) TCGA-55-8302-01 15 28211910 28211910 A T OCA2 Missense_Mutation p.L521Q 0.09 deleterious(0.02) benign(0.236) TCGA-55-8302-01 15 28419689 28419689 C T HERC2 Silent p.V3303V 0.05 TCGA-55-8302-01 15 28443874 28443874 C A HERC2 Silent p.V2586V 0.08 TCGA-55-8302-01 15 30058563 30058563 C A TJP1 Missense_Mutation p.R165S 0.24 deleterious(0.04) possibly_damaging(0.549) TCGA-55-8302-01 15 33936518 33936518 T C RYR3 Missense_Mutation p.V1188A 0.22 benign(0.329) TCGA-55-8302-01 15 42682218 42682218 T A CAPN3 Missense_Mutation p.M290K 0.06 tolerated(0.26) possibly_damaging(0.497) TCGA-55-8302-01 15 42682219 42682219 G T CAPN3 Missense_Mutation p.M290I 0.06 tolerated(0.38) benign(0.213) TCGA-55-8302-01 15 48054465 48054465 G A SEMA6D Missense_Mutation p.G203S 0.11 deleterious(0.02) probably_damaging(1) TCGA-55-8302-01 15 49148269 49148269 A G SHC4 Missense_Mutation p.Y375H 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-8302-01 15 50279605 50279605 C A ATP8B4 Missense_Mutation p.G244V 0.28 deleterious(0) probably_damaging(1) TCGA-55-8302-01 15 51028913 51028913 C A SPPL2A Missense_Mutation p.C253F 0.12 deleterious(0.01) probably_damaging(0.934) TCGA-55-8302-01 15 52527960 52527960 T A MYO5C Nonsense_Mutation p.K957* 0.11 TCGA-55-8302-01 15 52646081 52646081 C A MYO5A Missense_Mutation p.R1185L 0.32 tolerated(0.07) benign(0.016) TCGA-55-8302-01 15 65040725 65040725 C A RBPMS2 Missense_Mutation p.A154S 0.27 tolerated(0.16) benign(0.009) TCGA-55-8302-01 15 66811398 66811398 T C ZWILCH Missense_Mutation p.Y168H 0.08 tolerated(0.32) benign(0.009) TCGA-55-8302-01 15 72954781 72954781 C A GOLGA6B Missense_Mutation p.L346I 0.17 deleterious(0.02) benign(0) TCGA-55-8302-01 15 81592432 81592432 C G IL16 Missense_Mutation p.S922C 0.20 deleterious(0.05) benign(0.064) TCGA-55-8302-01 15 85448773 85448773 T A SLC28A1 Missense_Mutation p.S203T 0.14 tolerated(0.09) probably_damaging(0.978) TCGA-55-8302-01 15 91522525 91522525 C T PRC1 Splice_Site p.X324_splice 0.24 TCGA-55-8302-01 15 99029192 99029192 T A FAM169B 5'UTR 0.08 TCGA-55-8302-01 16 12145968 12145968 A C SNX29 Missense_Mutation p.Q338P 0.13 tolerated_low_confidence(0.26) benign(0.015) TCGA-55-8302-01 16 1260936 1260936 C A CACNA1H Silent p.R1396R 0.22 TCGA-55-8302-01 16 20996456 20996456 G T DNAH3 Silent p.T2536T 0.17 TCGA-55-8302-01 16 21261889 21261889 T A ANKS4B Missense_Mutation p.D334E 0.20 tolerated(1) benign(0.002) TCGA-55-8302-01 16 23767749 23767749 C A CHP2 Silent p.I131I 0.19 TCGA-55-8302-01 16 26147415 26147415 C G HS3ST4 Missense_Mutation p.P406R 0.23 deleterious(0) probably_damaging(0.994) TCGA-55-8302-01 16 27777732 27777732 C A KIAA0556 Silent p.A1304A 0.15 TCGA-55-8302-01 16 30990839 30990839 G T SETD1A Missense_Mutation p.E1244D 0.25 unknown(0) TCGA-55-8302-01 16 31391306 31391306 C T ITGAX Missense_Mutation p.P994S 0.17 tolerated(0.42) benign(0.213) TCGA-55-8302-01 16 31425820 31425820 G T ITGAD Missense_Mutation p.R682L 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-55-8302-01 16 32077437 32077437 C T IGHV3OR16-9 Silent p.L18L 0.08 TCGA-55-8302-01 16 48162529 48162529 G A ABCC12 Silent p.T452T 0.12 TCGA-55-8302-01 16 48244883 48244883 G C ABCC11 Missense_Mutation p.H528Q 0.26 tolerated(0.09) benign(0.015) TCGA-55-8302-01 16 48594665 48594665 G A N4BP1 Missense_Mutation p.T630I 0.18 deleterious(0) probably_damaging(0.96) TCGA-55-8302-01 16 53319565 53319565 G C CHD9 Missense_Mutation p.W1675C 0.17 probably_damaging(0.993) TCGA-55-8302-01 16 55516966 55516966 C A MMP2 Missense_Mutation p.P100Q 0.16 deleterious(0) probably_damaging(1) TCGA-55-8302-01 16 55600621 55600621 C A CAPNS2 5'UTR 0.25 TCGA-55-8302-01 16 55735780 55735780 G A SLC6A2 Silent p.L588L 0.13 TCGA-55-8302-01 16 55860185 55860185 C A CES1 Missense_Mutation p.G95W 0.11 deleterious(0.04) probably_damaging(0.926) TCGA-55-8302-01 16 56362655 56362655 A G GNAO1 Missense_Mutation p.E139G 0.07 tolerated(0.11) benign(0.33) TCGA-55-8302-01 16 67006321 67006321 A T CES3 Nonsense_Mutation p.K452* 0.23 TCGA-55-8302-01 16 70305789 70305789 T A AARS Missense_Mutation p.E189V 0.05 deleterious(0) probably_damaging(0.999) TCGA-55-8302-01 16 70501838 70501838 G T FUK Missense_Mutation p.R211L 0.10 tolerated(0.13) benign(0.016) TCGA-55-8302-01 16 70501839 70501839 G T FUK Silent p.R211R 0.10 TCGA-55-8302-01 16 70917924 70917924 C - HYDIN Frame_Shift_Del p.G3293Efs*7 0.13 TCGA-55-8302-01 16 72992425 72992425 G C ZFHX3 Silent p.L540L 0.20 TCGA-55-8302-01 16 7759065 7759065 C A RBFOX1 Silent p.R356R 0.13 TCGA-55-8302-01 16 82131955 82131955 G T HSD17B2 Missense_Mutation p.D360Y 0.12 deleterious(0) probably_damaging(0.97) TCGA-55-8302-01 16 84691317 84691317 G A KLHL36 Missense_Mutation p.G302S 0.07 deleterious(0) probably_damaging(0.979) TCGA-55-8302-01 16 87637016 87637016 G A JPH3 Silent p.T88T 0.41 TCGA-55-8302-01 16 87678184 87678184 G C JPH3 Missense_Mutation p.A235P 0.15 deleterious(0) possibly_damaging(0.737) TCGA-55-8302-01 16 9856983 9856983 G T GRIN2A 3'UTR 0.18 TCGA-55-8302-01 17 10398269 10398269 C A MYH1 Missense_Mutation p.Q1815H 0.30 deleterious(0.04) benign(0.05) TCGA-55-8302-01 17 1381978 1381978 C A MYO1C Missense_Mutation p.A382S 0.31 tolerated(0.12) possibly_damaging(0.522) TCGA-55-8302-01 17 17891328 17891328 G T LRRC48 Silent p.R120R 0.17 TCGA-55-8302-01 17 2601268 2601268 C A CLUH Missense_Mutation p.R590L 0.23 tolerated(0.12) benign(0.004) TCGA-55-8302-01 17 26116653 26116653 G T NOS2 Missense_Mutation p.Q58K 0.15 tolerated(0.67) benign(0.006) TCGA-55-8302-01 17 27187605 27187605 C T ERAL1 3'UTR 0.19 TCGA-55-8302-01 17 27284379 27284379 G T SEZ6 Silent p.A827A 0.25 TCGA-55-8302-01 17 27414069 27414069 T A MYO18A Missense_Mutation p.E1866V 0.15 deleterious(0) probably_damaging(0.999) TCGA-55-8302-01 17 27869681 27869681 A T TAOK1 Missense_Mutation p.M883L 0.06 tolerated(0.62) benign(0) TCGA-55-8302-01 17 30677204 30677204 G T ZNF207 5'UTR 0.19 TCGA-55-8302-01 17 34165556 34165556 T A TAF15 Missense_Mutation p.D304E 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.572) TCGA-55-8302-01 17 34415940 34415940 C A CCL3 3'UTR 0.15 TCGA-55-8302-01 17 36491493 36491493 T C GPR179 Missense_Mutation p.I463V 0.12 tolerated(0.06) benign(0.246) TCGA-55-8302-01 17 39884047 39884047 C A HAP1 Silent p.S414S 0.27 TCGA-55-8302-01 17 41052998 41052998 G T G6PC Silent p.V35V 0.11 TCGA-55-8302-01 17 41061384 41061384 A T G6PC Missense_Mutation p.I171F 0.06 deleterious(0) possibly_damaging(0.58) TCGA-55-8302-01 17 43908259 43908259 C T CRHR1 Silent p.P270P 0.16 TCGA-55-8302-01 17 46669635 46669635 C A HOXB5 Missense_Mutation p.W249L 0.05 deleterious(0) probably_damaging(0.989) TCGA-55-8302-01 17 51901239 51901239 T A KIF2B Missense_Mutation p.F282Y 0.16 tolerated(0.32) probably_damaging(0.999) TCGA-55-8302-01 17 56292129 56292129 C A MKS1 Missense_Mutation p.R163M 0.13 deleterious(0) probably_damaging(0.993) TCGA-55-8302-01 17 64873600 64873600 C A CACNG5 Silent p.I50I 0.06 TCGA-55-8302-01 17 65850855 65850855 G T BPTF Missense_Mutation p.W471C 0.09 possibly_damaging(0.64) TCGA-55-8302-01 17 71420156 71420156 G C SDK2 Silent p.S553S 0.31 TCGA-55-8302-01 17 72469720 72469720 G T CD300A Missense_Mutation p.G29V 0.15 deleterious(0) probably_damaging(1) TCGA-55-8302-01 17 72469995 72469995 G T CD300A Nonsense_Mutation p.E121* 0.08 TCGA-55-8302-01 17 7574000 7574000 C A TP53 Nonsense_Mutation p.E343* 0.33 TCGA-55-8302-01 17 77710998 77710998 G A ENPP7 Silent p.L395L 0.07 TCGA-55-8302-01 17 80790150 80790150 G A ZNF750 Nonsense_Mutation p.R61* 0.15 TCGA-55-8302-01 17 8224171 8224171 G C ARHGEF15 Missense_Mutation p.G796R 0.12 deleterious(0) probably_damaging(0.997) TCGA-55-8302-01 17 8638808 8638808 C T CCDC42 Missense_Mutation p.R205H 0.23 tolerated(0.23) benign(0.004) TCGA-55-8302-01 18 12367022 12367022 C A AFG3L2 Missense_Mutation p.R165I 0.09 deleterious(0.04) benign(0.003) TCGA-55-8302-01 18 31599554 31599554 C A NOL4 Missense_Mutation p.A262S 0.18 tolerated(1) possibly_damaging(0.672) TCGA-55-8302-01 18 3215154 3215154 C A MYOM1 Missense_Mutation p.R23L 0.18 deleterious_low_confidence(0.02) benign(0) TCGA-55-8302-01 18 32455329 32455329 G A DTNA Missense_Mutation p.V537I 0.09 deleterious(0.04) possibly_damaging(0.805) TCGA-55-8302-01 18 43462411 43462411 C G EPG5 Silent p.L1782L 0.20 TCGA-55-8302-01 18 48573650 48573650 G T SMAD4 Missense_Mutation p.L78F 0.18 deleterious(0.05) probably_damaging(0.992) TCGA-55-8302-01 18 61305192 61305192 C G SERPINB4 Missense_Mutation p.A312P 0.11 deleterious(0) probably_damaging(1) TCGA-55-8302-01 18 6986172 6986172 C T LAMA1 Silent p.L1781L 0.14 TCGA-55-8302-01 18 9255948 9255948 A T ANKRD12 Nonsense_Mutation p.K895* 0.22 TCGA-55-8302-01 19 10602328 10602328 C A KEAP1 Missense_Mutation p.G417V 0.32 deleterious(0) probably_damaging(0.987) TCGA-55-8302-01 19 11283797 11283797 C A KANK2 Missense_Mutation p.V699F 0.36 deleterious(0.01) possibly_damaging(0.736) TCGA-55-8302-01 19 14003674 14003674 A T C19orf57 Missense_Mutation p.F106L 0.16 deleterious(0) possibly_damaging(0.682) TCGA-55-8302-01 19 1467052 1467052 G A APC2 Missense_Mutation p.R1251Q 0.37 benign(0.002) TCGA-55-8302-01 19 15579525 15579525 T A PGLYRP2 Missense_Mutation p.R560S 0.15 tolerated_low_confidence(0.27) benign(0.039) TCGA-55-8302-01 19 18507651 18507651 C A LRRC25 Silent p.T41T 0.30 TCGA-55-8302-01 19 18643596 18643596 C A FKBP8 Missense_Mutation p.A345S 0.15 tolerated(0.19) benign(0.283) TCGA-55-8302-01 19 18775203 18775203 G T KLHL26 Missense_Mutation p.E72D 0.30 tolerated(0.16) benign(0.022) TCGA-55-8302-01 19 19606892 19606892 C T GATAD2A Missense_Mutation p.T263I 0.08 deleterious(0) possibly_damaging(0.655) TCGA-55-8302-01 19 21366545 21366545 G C ZNF431 Missense_Mutation p.G480A 0.07 deleterious(0.05) probably_damaging(0.998) TCGA-55-8302-01 19 22272170 22272170 G T ZNF257 Nonsense_Mutation p.E540* 0.27 TCGA-55-8302-01 19 22836752 22836752 C A ZNF492 Missense_Mutation p.T22N 0.09 deleterious(0) possibly_damaging(0.788) TCGA-55-8302-01 19 23159495 23159495 G T ZNF728 Missense_Mutation p.A215D 0.16 tolerated(0.21) benign(0.037) TCGA-55-8302-01 19 30935757 30935757 T A ZNF536 Missense_Mutation p.Y430N 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-55-8302-01 19 31768074 31768074 G T TSHZ3 Missense_Mutation p.D875E 0.16 tolerated(0.18) benign(0.007) TCGA-55-8302-01 19 33623269 33623269 G A WDR88 Missense_Mutation p.R65K 0.20 tolerated(1) benign(0.001) TCGA-55-8302-01 19 36014301 36014301 C A SBSN 3'UTR 0.19 TCGA-55-8302-01 19 40368319 40368319 C A FCGBP Silent p.R4343R 0.10 TCGA-55-8302-01 19 40419924 40419924 T A FCGBP Missense_Mutation p.N1024Y 0.10 probably_damaging(0.961) TCGA-55-8302-01 19 42791983 42791983 G A CIC Missense_Mutation p.A263T 0.08 probably_damaging(0.989) TCGA-55-8302-01 19 44604975 44604975 G C ZNF224 Missense_Mutation p.V13L 0.10 deleterious(0) probably_damaging(0.973) TCGA-55-8302-01 19 49362231 49362231 G A PLEKHA4 Silent p.P286P 0.14 TCGA-55-8302-01 19 50302908 50302908 G A AP2A1 Missense_Mutation p.R386Q 0.15 deleterious(0) possibly_damaging(0.456) TCGA-55-8302-01 19 51559975 51559975 C A KLK13 Nonsense_Mutation p.G235* 0.24 TCGA-55-8302-01 19 52918844 52918844 G T ZNF528 Missense_Mutation p.G247C 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-8302-01 19 52954791 52954791 G T ZNF578 5'Flank 0.18 TCGA-55-8302-01 19 53344258 53344258 C A ZNF468 Missense_Mutation p.R430M 0.13 tolerated(0.05) possibly_damaging(0.472) TCGA-55-8302-01 19 53668900 53668900 C A ZNF665 Missense_Mutation p.Q281H 0.24 tolerated(0.11) benign(0.097) TCGA-55-8302-01 19 53762337 53762337 A C VN1R2 Missense_Mutation p.N237H 0.20 tolerated(0.07) possibly_damaging(0.463) TCGA-55-8302-01 19 53762338 53762338 A T VN1R2 Missense_Mutation p.N237I 0.20 deleterious(0.01) probably_damaging(0.959) TCGA-55-8302-01 19 53770436 53770436 G C VN1R4 Missense_Mutation p.N161K 0.23 tolerated(1) benign(0) TCGA-55-8302-01 19 54203284 54203284 C A MIR518F RNA 0.23 TCGA-55-8302-01 19 54403907 54403907 C A PRKCG Missense_Mutation p.H493Q 0.06 deleterious(0) probably_damaging(1) TCGA-55-8302-01 19 54801943 54801943 C A LILRA3 Silent p.L415L 0.25 TCGA-55-8302-01 19 54822913 54822913 C A LILRA5 Missense_Mutation p.Q161H 0.21 deleterious(0.03) benign(0.107) TCGA-55-8302-01 19 55087494 55087494 G T LILRA2 Silent p.G391G 0.29 TCGA-55-8302-01 19 55144057 55144057 C A LILRB1 Silent p.L268L 0.16 TCGA-55-8302-01 19 55220916 55220916 A T AC098784.2 3'Flank 0.17 TCGA-55-8302-01 19 55239218 55239218 G A KIR3DL3 Missense_Mutation p.R166H 0.15 tolerated(0.82) benign(0.002) TCGA-55-8302-01 19 55301655 55301655 C A CTB-61M7.1 RNA 0.12 TCGA-55-8302-01 19 55399706 55399706 G C FCAR Intron 0.31 TCGA-55-8302-01 19 55481432 55481432 C G NLRP2 Missense_Mutation p.Q17E 0.12 tolerated(0.3) benign(0.031) TCGA-55-8302-01 19 56466017 56466017 C A NLRP8 Missense_Mutation p.P198H 0.13 deleterious(0.02) probably_damaging(0.98) TCGA-55-8302-01 19 56544033 56544033 G T NLRP5 Missense_Mutation p.G778V 0.26 tolerated(0.16) benign(0.282) TCGA-55-8302-01 19 57888723 57888723 G T ZNF547 Nonsense_Mutation p.E127* 0.13 TCGA-55-8302-01 19 58187604 58187604 C A ZSCAN4 Missense_Mutation p.P31T 0.10 tolerated(0.5) benign(0.025) TCGA-55-8302-01 19 58231920 58231920 A T ZNF671 Missense_Mutation p.C512S 0.24 deleterious(0) probably_damaging(0.999) TCGA-55-8302-01 19 746420 746420 G T PALM Missense_Mutation p.R257L 0.42 tolerated(0.23) benign(0.015) TCGA-55-8302-01 19 7620626 7620626 C T PNPLA6 Nonsense_Mutation p.Q1034* 0.09 TCGA-55-8302-01 19 9065119 9065119 G T MUC16 Missense_Mutation p.P7443T 0.31 unknown(0) TCGA-55-8302-01 1 103427796 103427796 G A COL11A1 Missense_Mutation p.S1017L 0.10 unknown(0) TCGA-55-8302-01 1 104161642 104161642 C G AMY2A Missense_Mutation p.P142R 0.12 deleterious(0) probably_damaging(0.978) TCGA-55-8302-01 1 110765949 110765949 G T KCNC4 Missense_Mutation p.V348L 0.09 tolerated(0.09) probably_damaging(0.998) TCGA-55-8302-01 1 110996623 110996623 G A PROK1 Missense_Mutation p.C38Y 0.16 deleterious(0) probably_damaging(1) TCGA-55-8302-01 1 114214364 114214364 G T MAGI3 Missense_Mutation p.G942C 0.09 deleterious(0) probably_damaging(0.996) TCGA-55-8302-01 1 115537563 115537563 C G SYCP1 Missense_Mutation p.R952G 0.12 deleterious(0) benign(0.26) TCGA-55-8302-01 1 11562027 11562027 G T PTCHD2 Silent p.P326P 0.09 TCGA-55-8302-01 1 11596601 11596601 C A PTCHD2 Missense_Mutation p.P1346H 0.08 deleterious(0) probably_damaging(1) TCGA-55-8302-01 1 119925536 119925536 A T HAO2 Splice_Site p.X44_splice 0.27 TCGA-55-8302-01 1 1222225 1222225 A T SCNN1D Missense_Mutation p.N330I 0.13 deleterious(0.02) probably_damaging(0.931) TCGA-55-8302-01 1 13695909 13695909 C A PRAMEF19 Missense_Mutation p.Q352H 0.12 possibly_damaging(0.73) TCGA-55-8302-01 1 13695910 13695910 T A PRAMEF19 Missense_Mutation p.Q352L 0.12 benign(0.36) TCGA-55-8302-01 1 145440401 145440401 C T TXNIP Missense_Mutation p.S236L 0.27 deleterious(0.04) benign(0.363) TCGA-55-8302-01 1 149880793 149880793 G C SV2A Missense_Mutation p.R444G 0.13 deleterious(0.02) probably_damaging(0.961) TCGA-55-8302-01 1 152280177 152280177 G T FLG Missense_Mutation p.S2395R 0.12 benign(0.307) TCGA-55-8302-01 1 152282997 152282997 G A FLG Silent p.H1455H 0.09 TCGA-55-8302-01 1 152283554 152283554 C A FLG Missense_Mutation p.V1270F 0.07 possibly_damaging(0.727) TCGA-55-8302-01 1 152323947 152323947 G A FLG2 Silent p.H2105H 0.14 TCGA-55-8302-01 1 152484341 152484341 T A LCE5A Missense_Mutation p.C111S 0.11 deleterious_low_confidence(0) unknown(0) TCGA-55-8302-01 1 153390584 153390584 C T S100A7A Missense_Mutation p.S9F 0.19 tolerated(0.72) benign(0.1) TCGA-55-8302-01 1 155270071 155270071 C A PKLR Missense_Mutation p.G34V 0.13 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-55-8302-01 1 155727098 155727098 C A GON4L Missense_Mutation p.W1757L 0.14 tolerated(0.1) possibly_damaging(0.504) TCGA-55-8302-01 1 156640403 156640403 C A NES Missense_Mutation p.G1193C 0.06 tolerated(0.11) benign(0.006) TCGA-55-8302-01 1 156874563 156874563 C T PEAR1 Missense_Mutation p.S42F 0.05 deleterious(0) probably_damaging(0.933) TCGA-55-8302-01 1 157485661 157485661 C A FCRL5 Missense_Mutation p.A939S 0.16 deleterious(0.03) benign(0.135) TCGA-55-8302-01 1 157665128 157665128 T C FCRL3 Missense_Mutation p.R468G 0.07 deleterious(0.04) benign(0.028) TCGA-55-8302-01 1 157736727 157736727 A T FCRL2 Silent p.A399A 0.09 TCGA-55-8302-01 1 157740421 157740421 C A FCRL2 Nonsense_Mutation p.E30* 0.09 TCGA-55-8302-01 1 158639315 158639315 G A SPTA1 Silent p.A572A 0.17 TCGA-55-8302-01 1 159176188 159176188 C A DARC Missense_Mutation p.P322H 0.08 deleterious(0) probably_damaging(0.989) TCGA-55-8302-01 1 159409908 159409908 C T OR10J1 Silent p.I120I 0.21 TCGA-55-8302-01 1 161163865 161163865 G A ADAMTS4 Missense_Mutation p.L470F 0.11 deleterious(0) probably_damaging(0.999) TCGA-55-8302-01 1 161163912 161163912 C A ADAMTS4 Missense_Mutation p.G454V 0.27 deleterious(0) probably_damaging(1) TCGA-55-8302-01 1 16269620 16269620 G A ZBTB17 Silent p.S589S 0.09 TCGA-55-8302-01 1 163042602 163042602 C A RGS4 Missense_Mutation p.Q150K 0.15 tolerated(0.84) benign(0.033) TCGA-55-8302-01 1 16353090 16353090 G T CLCNKA Silent p.T186T 0.21 TCGA-55-8302-01 1 167367324 167367324 G A POU2F1 Missense_Mutation p.S408N 0.13 deleterious(0) unknown(0) TCGA-55-8302-01 1 170967327 170967327 C T MROH9 Missense_Mutation p.P503L 0.22 tolerated(0.21) possibly_damaging(0.778) TCGA-55-8302-01 1 171293330 171293330 G A FMO4 Nonsense_Mutation p.W125* 0.10 TCGA-55-8302-01 1 179562674 179562674 G T TDRD5 Missense_Mutation p.M104I 0.15 tolerated(0.25) benign(0.005) TCGA-55-8302-01 1 180053213 180053213 G C CEP350 Missense_Mutation p.R2062P 0.14 probably_damaging(1) TCGA-55-8302-01 1 181549788 181549788 G A CACNA1E Missense_Mutation p.G276D 0.21 tolerated(0.36) probably_damaging(0.982) TCGA-55-8302-01 1 183891434 183891434 G C RGL1 Missense_Mutation p.E730Q 0.11 deleterious(0.02) benign(0.096) TCGA-55-8302-01 1 186092348 186092348 C A HMCN1 Silent p.V4165V 0.12 TCGA-55-8302-01 1 197390762 197390762 G C CRB1 Missense_Mutation p.D602H 0.13 tolerated(0.55) benign(0.073) TCGA-55-8302-01 1 198225618 198225618 A T NEK7 Intron 0.21 TCGA-55-8302-01 1 198701651 198701651 C A PTPRC Missense_Mutation p.A703E 0.09 deleterious(0.04) possibly_damaging(0.833) TCGA-55-8302-01 1 200818570 200818570 G A CAMSAP2 Silent p.L891L 0.16 TCGA-55-8302-01 1 201196071 201196071 C A IGFN1 Missense_Mutation p.F3616L 0.21 probably_damaging(0.993) TCGA-55-8302-01 1 201334385 201334385 C A TNNT2 Silent p.L105L 0.13 TCGA-55-8302-01 1 203452843 203452843 G C PRELP Missense_Mutation p.R177S 0.21 tolerated(0.06) possibly_damaging(0.838) TCGA-55-8302-01 1 204589089 204589089 G A LRRN2 Missense_Mutation p.A11V 0.12 tolerated(0.46) unknown(0) TCGA-55-8302-01 1 205065867 205065867 G A RBBP5 Missense_Mutation p.P447S 0.14 tolerated(0.15) benign(0.34) TCGA-55-8302-01 1 206230901 206230901 T A AVPR1B Missense_Mutation p.L345Q 0.08 deleterious(0.01) benign(0.17) TCGA-55-8302-01 1 212148541 212148541 T C INTS7 Silent p.L594L 0.12 TCGA-55-8302-01 1 215759965 215759965 G T KCTD3 Missense_Mutation p.V252F 0.06 deleterious(0) possibly_damaging(0.794) TCGA-55-8302-01 1 221055673 221055673 G T HLX Missense_Mutation p.G314C 0.10 deleterious(0) probably_damaging(1) TCGA-55-8302-01 1 222802613 222802613 A G MIA3 Missense_Mutation p.E684G 0.17 tolerated(0.17) benign(0.014) TCGA-55-8302-01 1 224302034 224302034 C T FBXO28 Missense_Mutation p.P68L 0.24 deleterious(0) possibly_damaging(0.856) TCGA-55-8302-01 1 237632444 237632444 C T RYR2 Silent p.L555L 0.16 TCGA-55-8302-01 1 237798188 237798188 G A RYR2 Splice_Site p.X2230_splice 0.28 TCGA-55-8302-01 1 247464565 247464565 C A ZNF496 Silent p.P340P 0.11 TCGA-55-8302-01 1 247978147 247978147 C T OR14A16 Silent p.K295K 0.11 TCGA-55-8302-01 1 248112895 248112895 G T OR2L8 Missense_Mutation p.V246L 0.15 deleterious(0) probably_damaging(0.945) TCGA-55-8302-01 1 248224045 248224045 G T OR2L3 Missense_Mutation p.R21I 0.05 tolerated(0.05) benign(0.008) TCGA-55-8302-01 1 248487433 248487433 G T OR2M7 Silent p.A146A 0.14 TCGA-55-8302-01 1 248844883 248844883 G A OR14I1 Silent p.P241P 0.14 TCGA-55-8302-01 1 26524879 26524879 G T CATSPER4 Missense_Mutation p.D261Y 0.07 deleterious(0) probably_damaging(1) TCGA-55-8302-01 1 26694243 26694243 C T ZNF683 Missense_Mutation p.G54S 0.13 deleterious(0.04) possibly_damaging(0.728) TCGA-55-8302-01 1 37325577 37325577 G T GRIK3 Silent p.G276G 0.14 TCGA-55-8302-01 1 39384668 39384668 C A RHBDL2 Missense_Mutation p.V73L 0.11 tolerated(1) benign(0.003) TCGA-55-8302-01 1 43779074 43779074 A G TIE1 Silent p.V732V 0.12 TCGA-55-8302-01 1 44169782 44169782 T A KDM4A Missense_Mutation p.L1018Q 0.09 deleterious(0) probably_damaging(0.979) TCGA-55-8302-01 1 45965225 45965225 A G CCDC163P Silent p.D19D 0.17 TCGA-55-8302-01 1 47398205 47398205 G C CYP4A11 Intron 0.10 TCGA-55-8302-01 1 50885150 50885150 G T DMRTA2 Silent p.G272G 0.31 TCGA-55-8302-01 1 60073539 60073539 G T FGGY Missense_Mutation p.G323V 0.06 deleterious(0.01) possibly_damaging(0.691) TCGA-55-8302-01 1 64671358 64671358 G A UBE2U Missense_Mutation p.E35K 0.13 tolerated(0.47) benign(0.041) TCGA-55-8302-01 1 66075902 66075902 A G LEPR Missense_Mutation p.M640V 0.16 tolerated(0.57) benign(0) TCGA-55-8302-01 1 70451948 70451948 G T LRRC7 Missense_Mutation p.L232F 0.12 deleterious(0) possibly_damaging(0.741) TCGA-55-8302-01 1 71418477 71418477 G T PTGER3 3'UTR 0.21 TCGA-55-8302-01 1 76877698 76877698 G T ST6GALNAC3 Missense_Mutation p.L73F 0.11 probably_damaging(1) TCGA-55-8302-01 1 77779519 77779519 G T AK5 Intron 0.09 TCGA-55-8302-01 1 79402048 79402048 G A ELTD1 Missense_Mutation p.P270L 0.16 tolerated(0.13) benign(0.06) TCGA-55-8302-01 20 10393889 10393889 C A MKKS Missense_Mutation p.G92C 0.09 deleterious(0) probably_damaging(1) TCGA-55-8302-01 20 13698081 13698081 C A ESF1 Missense_Mutation p.Q732H 0.14 deleterious(0.01) probably_damaging(0.993) TCGA-55-8302-01 20 19970732 19970732 C T RIN2 Silent p.H664H 0.13 TCGA-55-8302-01 20 23016606 23016606 G T SSTR4 Silent p.V162V 0.10 TCGA-55-8302-01 20 23546694 23546694 G A CST9L Silent p.L91L 0.16 TCGA-55-8302-01 20 2776938 2776938 C A CPXM1 Silent p.L399L 0.14 TCGA-55-8302-01 20 29891225 29891225 G T DEFB116 Missense_Mutation p.S33R 0.11 tolerated(0.71) benign(0.002) TCGA-55-8302-01 20 29965017 29965017 C T DEFB118 3'Flank 0.15 TCGA-55-8302-01 20 29976959 29976959 G A DEFB119 Missense_Mutation p.R46C 0.14 deleterious(0) probably_damaging(0.968) TCGA-55-8302-01 20 31596489 31596489 G - BPIFB2 Frame_Shift_Del 0.26 TCGA-55-8302-01 20 3655488 3655488 G C ADAM33 Missense_Mutation p.C114W 0.15 deleterious(0) probably_damaging(1) TCGA-55-8302-01 20 4228937 4228937 A G ADRA1D Missense_Mutation p.V223A 0.12 tolerated(0.15) benign(0.173) TCGA-55-8302-01 20 43052756 43052756 C T HNF4A Missense_Mutation p.R331C 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-55-8302-01 20 44674559 44674559 C A SLC12A5 Missense_Mutation p.L561M 0.15 deleterious(0) probably_damaging(0.992) TCGA-55-8302-01 20 44841774 44841774 G T CDH22 Missense_Mutation p.R298S 0.09 deleterious(0.03) probably_damaging(0.998) TCGA-55-8302-01 20 44986386 44986386 C A SLC35C2 Silent p.T49T 0.12 TCGA-55-8302-01 20 45354963 45354963 G - SLC2A10 Frame_Shift_Del 0.11 TCGA-55-8302-01 20 45865254 45865254 T A ZMYND8 Missense_Mutation p.Q845L 0.29 deleterious_low_confidence(0.01) benign(0.036) TCGA-55-8302-01 20 4864311 4864311 C A SLC23A2 Silent p.G267G 0.09 TCGA-55-8302-01 20 52645218 52645218 G A BCAS1 Missense_Mutation p.P146S 0.11 tolerated(0.73) benign(0.311) TCGA-55-8302-01 20 56098884 56098884 G T CTCFL Silent p.P126P 0.22 TCGA-55-8302-01 20 56179654 56179654 C T ZBP1 Missense_Mutation p.G422E 0.09 tolerated(0.53) probably_damaging(0.972) TCGA-55-8302-01 20 56730593 56730593 C G C20orf85 Missense_Mutation p.R74G 0.17 deleterious(0) benign(0.117) TCGA-55-8302-01 20 57899631 57899631 C A EDN3 3'UTR 0.12 TCGA-55-8302-01 20 57899632 57899632 A G EDN3 3'UTR 0.13 TCGA-55-8302-01 20 61488782 61488782 A - TCFL5 Frame_Shift_Del p.R402Gfs*22 0.14 TCGA-55-8302-01 20 62697839 62697843 TGGAT - TCEA2 Frame_Shift_Del p.M28Ifs*34 0.10 TCGA-55-8302-01 20 9346158 9346158 G A PLCB4 Missense_Mutation p.R167K 0.06 tolerated(1) benign(0.097) TCGA-55-8302-01 20 9371233 9371233 C A PLCB4 Missense_Mutation p.L432M 0.09 deleterious(0) possibly_damaging(0.888) TCGA-55-8302-01 20 9624854 9624854 G T PAK7 Missense_Mutation p.S41R 0.22 deleterious(0) probably_damaging(0.996) TCGA-55-8302-01 21 10934045 10934045 G T TPTE Missense_Mutation p.T311N 0.07 deleterious(0.01) possibly_damaging(0.855) TCGA-55-8302-01 21 17911465 17911465 G T MIR99A RNA 0.28 TCGA-55-8302-01 21 30521560 30521560 C T MAP3K7CL Nonsense_Mutation p.Q141* 0.12 TCGA-55-8302-01 21 32127505 32127505 G T KRTAP21-1 Nonsense_Mutation p.Y64* 0.14 TCGA-55-8302-01 21 47647530 47647530 C T LSS Silent p.V85V 0.19 TCGA-55-8302-01 22 16287396 16287396 C A POTEH Missense_Mutation p.A164S 0.05 deleterious(0.03) probably_damaging(0.964) TCGA-55-8302-01 22 17072115 17072115 G T CCT8L2 Silent p.A442A 0.20 TCGA-55-8302-01 22 17072309 17072309 T A CCT8L2 Missense_Mutation p.R378W 0.10 deleterious(0) probably_damaging(0.999) TCGA-55-8302-01 22 17072858 17072858 C A CCT8L2 Missense_Mutation p.D195Y 0.16 deleterious(0) probably_damaging(0.934) TCGA-55-8302-01 22 17280684 17280684 A G XKR3 Missense_Mutation p.I189T 0.09 tolerated(0.14) possibly_damaging(0.803) TCGA-55-8302-01 22 17663587 17663587 G C CECR1 Missense_Mutation p.I382M 0.11 deleterious(0) probably_damaging(0.997) TCGA-55-8302-01 22 21330009 21330009 C T AIFM3 Missense_Mutation p.A250V 0.12 tolerated(0.5) benign(0.13) TCGA-55-8302-01 22 22026636 22026636 T C PPIL2 Missense_Mutation p.L70P 0.29 deleterious(0) probably_damaging(0.997) TCGA-55-8302-01 22 23162060 23162060 G T IGLV3-9 Silent p.V51V 0.19 TCGA-55-8302-01 22 26761426 26761426 C A SEZ6L Silent p.S896S 0.20 TCGA-55-8302-01 22 32495173 32495173 G A SLC5A1 Silent p.L428L 0.16 TCGA-55-8302-01 22 32616905 32616905 A T SLC5A4 Splice_Site p.X590_splice 0.07 TCGA-55-8302-01 22 36123211 36123211 G T APOL5 Missense_Mutation p.V366F 0.14 deleterious_low_confidence(0) benign(0.008) TCGA-55-8302-01 22 39826356 39826356 C T TAB1 3'UTR 0.12 TCGA-55-8302-01 22 40080422 40080422 T A CACNA1I Silent p.T1982T 0.10 TCGA-55-8302-01 22 40140282 40140282 G T ENTHD1 Missense_Mutation p.T409N 0.26 tolerated(0.06) possibly_damaging(0.535) TCGA-55-8302-01 22 40804844 40804844 C A SGSM3 Silent p.R634R 0.10 TCGA-55-8302-01 22 42905085 42905085 A T RRP7A 3'Flank 0.25 TCGA-55-8302-01 22 50488604 50488604 C A TTLL8 Nonsense_Mutation p.E78* 0.09 TCGA-55-8302-01 2 125521616 125521616 C T CNTNAP5 Missense_Mutation p.H808Y 0.14 deleterious(0) possibly_damaging(0.809) TCGA-55-8302-01 2 128910458 128910458 A G UGGT1 Missense_Mutation p.Y706C 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-55-8302-01 2 132110660 132110660 C A AC073869.2 RNA 0.16 TCGA-55-8302-01 2 135738449 135738449 G T MAP3K19 Missense_Mutation p.P1288T 0.08 deleterious(0.01) benign(0.156) TCGA-55-8302-01 2 148654051 148654051 G T ACVR2A Missense_Mutation p.W79C 0.12 deleterious(0) probably_damaging(1) TCGA-55-8302-01 2 152132106 152132106 T A NMI Nonsense_Mutation p.K176* 0.22 TCGA-55-8302-01 2 153591531 153591531 T A ARL6IP6 Missense_Mutation p.S160T 0.04 deleterious(0.01) probably_damaging(0.962) TCGA-55-8302-01 2 157182080 157182080 C A NR4A2 3'UTR 0.11 TCGA-55-8302-01 2 158390541 158390541 C A ACVR1C Missense_Mutation p.M457I 0.18 tolerated(0.17) benign(0.351) TCGA-55-8302-01 2 162696308 162696308 C T SLC4A10 Missense_Mutation p.S96L 0.11 deleterious(0.03) benign(0.26) TCGA-55-8302-01 2 163695103 163695103 C G KCNH7 5'UTR 0.19 TCGA-55-8302-01 2 166234120 166234120 G A SCN2A Missense_Mutation p.G1423E 0.09 deleterious(0) probably_damaging(1) TCGA-55-8302-01 2 166618462 166618462 C T GALNT3 Missense_Mutation p.G264E 0.13 deleterious(0) probably_damaging(0.983) TCGA-55-8302-01 2 166852536 166852536 A G SCN1A Missense_Mutation p.I1523T 0.14 deleterious(0.02) possibly_damaging(0.77) TCGA-55-8302-01 2 16769390 16769390 C A FAM49A 5'UTR 0.17 TCGA-55-8302-01 2 168104577 168104577 G - XIRP2 Frame_Shift_Del p.M2225Ifs*24 0.09 TCGA-55-8302-01 2 171573798 171573798 T C SP5 Missense_Mutation p.C361R 0.15 deleterious(0) possibly_damaging(0.712) TCGA-55-8302-01 2 172586275 172586275 A G DYNC1I2 Missense_Mutation p.H483R 0.22 deleterious(0.01) benign(0.04) TCGA-55-8302-01 2 176988234 176988234 C A HOXD9 Missense_Mutation p.S246R 0.22 deleterious(0.01) possibly_damaging(0.839) TCGA-55-8302-01 2 178097900 178097900 C A NFE2L2 Intron 0.21 TCGA-55-8302-01 2 179226408 179226408 G T OSBPL6 Splice_Site p.X410_splice 0.13 TCGA-55-8302-01 2 179451986 179451986 G T TTN Missense_Mutation p.P21318T 0.13 TCGA-55-8302-01 2 179702272 179702272 G C CCDC141 Missense_Mutation p.S1225C 0.26 deleterious(0.01) benign(0.101) TCGA-55-8302-01 2 179742775 179742775 C A CCDC141 Silent p.S605S 0.17 TCGA-55-8302-01 2 182403841 182403841 C A CERKL Missense_Mutation p.V532F 0.17 tolerated(0.17) benign(0.439) TCGA-55-8302-01 2 183387042 183387042 C A PDE1A Missense_Mutation p.G21V 0.17 tolerated_low_confidence(0.56) benign(0.289) TCGA-55-8302-01 2 185802326 185802326 G T ZNF804A Missense_Mutation p.D735Y 0.12 deleterious(0) probably_damaging(0.993) TCGA-55-8302-01 2 186673721 186673721 G T FSIP2 Missense_Mutation p.G6652V 0.11 probably_damaging(1) TCGA-55-8302-01 2 18766196 18766196 G T NT5C1B Missense_Mutation p.L163M 0.33 tolerated_low_confidence(0.08) benign(0.308) TCGA-55-8302-01 2 187694457 187694457 G T ZSWIM2 Missense_Mutation p.H364Q 0.11 deleterious(0) probably_damaging(0.997) TCGA-55-8302-01 2 191224786 191224786 G T INPP1 5'UTR 0.13 TCGA-55-8302-01 2 202725485 202725485 G T CDK15 Intron 0.17 TCGA-55-8302-01 2 202755507 202755507 G T CDK15 Intron 0.13 TCGA-55-8302-01 2 204820472 204820472 G T ICOS Missense_Mutation p.G58W 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-8302-01 2 204820473 204820473 G T ICOS Missense_Mutation p.G58V 0.17 deleterious(0) probably_damaging(0.978) TCGA-55-8302-01 2 207170747 207170747 G A ZDBF2 Missense_Mutation p.D499N 0.25 deleterious(0.05) possibly_damaging(0.857) TCGA-55-8302-01 2 207516636 207516636 G T DYTN Missense_Mutation p.S548Y 0.08 deleterious(0.01) possibly_damaging(0.729) TCGA-55-8302-01 2 209049752 209049752 C A C2orf80 Missense_Mutation p.D16Y 0.10 deleterious(0) probably_damaging(1) TCGA-55-8302-01 2 21230826 21230826 G T APOB Missense_Mutation p.Q2972K 0.15 probably_damaging(0.952) TCGA-55-8302-01 2 216960735 216960735 C T TMEM169 Missense_Mutation p.H17Y 0.21 tolerated_low_confidence(0.86) benign(0.169) TCGA-55-8302-01 2 227661215 227661216 - A IRS1 Frame_Shift_Ins p.S747Ffs*8 0.10 TCGA-55-8302-01 2 227662659 227662659 G A IRS1 Missense_Mutation p.P266S 0.12 deleterious(0) probably_damaging(0.981) TCGA-55-8302-01 2 228211992 228211992 C T MFF Missense_Mutation p.P215L 0.14 deleterious(0) benign(0.285) TCGA-55-8302-01 2 231941753 231941753 A T PSMD1 Silent p.P316P 0.12 TCGA-55-8302-01 2 233394803 233394803 G A CHRND Silent p.V258V 0.10 TCGA-55-8302-01 2 240969346 240969346 C G OR6B2 Silent p.T167T 0.21 TCGA-55-8302-01 2 241078687 241078688 - G OTOS Frame_Shift_Ins p.L57Pfs*75 0.15 TCGA-55-8302-01 2 241829465 241829465 C G C2orf54 Missense_Mutation p.R284P 0.15 tolerated(0.11) possibly_damaging(0.9) TCGA-55-8302-01 2 242075382 242075382 C A PASK Missense_Mutation p.D404Y 0.14 deleterious(0.04) probably_damaging(0.992) TCGA-55-8302-01 2 24246992 24246992 C T MFSD2B Silent p.C447C 0.09 TCGA-55-8302-01 2 25972654 25972654 G A ASXL2 Missense_Mutation p.R591C 0.13 tolerated(0.06) benign(0.004) TCGA-55-8302-01 2 27261635 27261635 G T TMEM214 Missense_Mutation p.K453N 0.10 tolerated(0.1) benign(0.03) TCGA-55-8302-01 2 27479666 27479666 G T SLC30A3 Silent p.I291I 0.13 TCGA-55-8302-01 2 27803384 27803384 T A C2orf16 Silent p.S1315S 0.26 TCGA-55-8302-01 2 31565136 31565136 C A XDH Missense_Mutation p.E1144D 0.10 tolerated(0.2) benign(0.026) TCGA-55-8302-01 2 3197938 3197938 C A TSSC1 Splice_Site p.X218_splice 0.12 TCGA-55-8302-01 2 40656181 40656181 C A SLC8A1 Missense_Mutation p.G414W 0.17 deleterious(0.01) possibly_damaging(0.75) TCGA-55-8302-01 2 40657235 40657235 G - SLC8A1 Frame_Shift_Del p.I63Ffs*33 0.11 TCGA-55-8302-01 2 44031829 44031829 C T DYNC2LI1 Missense_Mutation p.S284L 0.12 deleterious(0.01) benign(0.06) TCGA-55-8302-01 2 44050016 44050016 C T ABCG5 Nonsense_Mutation p.W461* 0.13 TCGA-55-8302-01 2 46574050 46574050 C T EPAS1 Missense_Mutation p.A22V 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-8302-01 2 46611728 46611728 G C EPAS1 Missense_Mutation p.V848L 0.13 deleterious(0.03) possibly_damaging(0.826) TCGA-55-8302-01 2 46611730 46611730 G T EPAS1 Silent p.V848V 0.13 TCGA-55-8302-01 2 46986215 46986215 G A SOCS5 Silent p.Q182Q 0.11 TCGA-55-8302-01 2 50149125 50149125 G T NRXN1 Missense_Mutation p.S1534Y 0.10 tolerated(0.18) possibly_damaging(0.525) TCGA-55-8302-01 2 50850589 50850589 G T NRXN1 Missense_Mutation p.L366I 0.11 tolerated(0.08) probably_damaging(1) TCGA-55-8302-01 2 55523085 55523085 C T CCDC88A Silent p.R1732R 0.28 TCGA-55-8302-01 2 55582851 55582851 G - CCDC88A Frame_Shift_Del p.H222Ifs*19 0.15 TCGA-55-8302-01 2 58387007 58387008 - A VRK2 3'Flank 0.17 TCGA-55-8302-01 2 60773403 60773403 C G BCL11A Missense_Mutation p.E30Q 0.15 tolerated_low_confidence(0.19) possibly_damaging(0.885) TCGA-55-8302-01 2 70047830 70047830 G T ANXA4 Splice_Site p.X262_splice 0.11 TCGA-55-8302-01 2 71036378 71036378 G T CLEC4F 3'UTR 0.15 TCGA-55-8302-01 2 74475522 74475522 C A SLC4A5 Missense_Mutation p.G582V 0.17 deleterious(0) probably_damaging(0.992) TCGA-55-8302-01 2 79364024 79364024 G T REG1P RNA 0.26 TCGA-55-8302-01 2 89399440 89399440 C A IGKV1-16 Missense_Mutation p.G88V 0.11 deleterious(0.02) possibly_damaging(0.551) TCGA-55-8302-01 2 89399441 89399441 C A IGKV1-16 Nonsense_Mutation p.G88* 0.11 TCGA-55-8302-01 2 89521425 89521425 C A IGKV2-28 Silent p.P38P 0.25 TCGA-55-8302-01 2 96951077 96951077 C A SNRNP200 Silent p.V1335V 0.13 TCGA-55-8302-01 2 99224896 99224896 C A COA5 5'UTR 0.50 TCGA-55-8302-01 2 99721875 99721875 C A TSGA10 Nonsense_Mutation p.E136* 0.15 TCGA-55-8302-01 3 111846907 111846907 A T GCSAM Missense_Mutation p.C36S 0.36 deleterious(0.02) probably_damaging(0.943) TCGA-55-8302-01 3 112324518 112324518 G T CCDC80 Missense_Mutation p.L867I 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-55-8302-01 3 118621295 118621295 C A IGSF11 3'UTR 0.28 TCGA-55-8302-01 3 118624498 118624498 C A IGSF11 Silent p.V216V 0.16 TCGA-55-8302-01 3 128181814 128181814 G T DNAJB8 Missense_Mutation p.T92N 0.14 deleterious(0.01) benign(0.05) TCGA-55-8302-01 3 134920415 134920415 G T EPHB1 Missense_Mutation p.D744Y 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-55-8302-01 3 13860532 13860532 C A WNT7A Missense_Mutation p.R320L 0.23 deleterious(0.01) possibly_damaging(0.564) TCGA-55-8302-01 3 147128370 147128370 C G ZIC1 Missense_Mutation p.N157K 0.39 tolerated(0.07) probably_damaging(0.941) TCGA-55-8302-01 3 156763171 156763171 C T LEKR1 Missense_Mutation p.R571C 0.15 deleterious(0) possibly_damaging(0.835) TCGA-55-8302-01 3 158388747 158388747 T A LXN Missense_Mutation p.K64I 0.35 deleterious(0.01) benign(0.409) TCGA-55-8302-01 3 16216667 16216667 A T GALNT15 Silent p.L3L 0.31 TCGA-55-8302-01 3 164776812 164776812 C T SI Missense_Mutation p.R446K 0.40 tolerated(0.09) benign(0.033) TCGA-55-8302-01 3 167196594 167196594 G T WDR49 3'UTR 0.31 TCGA-55-8302-01 3 187386773 187386773 A G SST 3'UTR 0.24 TCGA-55-8302-01 3 193049046 193049046 G A ATP13A5 Missense_Mutation p.P443S 0.18 deleterious(0.02) probably_damaging(0.973) TCGA-55-8302-01 3 195594872 195594872 C A TNK2 Missense_Mutation p.R829L 0.54 deleterious_low_confidence(0.02) benign(0.427) TCGA-55-8302-01 3 19975088 19975088 C A EFHB Silent p.G141G 0.39 TCGA-55-8302-01 3 21478697 21478697 T A ZNF385D Splice_Site p.X147_splice 0.37 TCGA-55-8302-01 3 37458917 37458917 G T C3orf35 Nonsense_Mutation p.E54* 0.37 TCGA-55-8302-01 3 38639235 38639235 C T SCN5A Silent p.L749L 0.11 TCGA-55-8302-01 3 38888598 38888598 C A SCN11A Nonsense_Mutation p.E1655* 0.20 TCGA-55-8302-01 3 38946697 38946697 G A SCN11A Missense_Mutation p.T530I 0.20 deleterious(0) probably_damaging(0.999) TCGA-55-8302-01 3 39136217 39136217 C A WDR48 Missense_Mutation p.R673S 0.19 deleterious(0) probably_damaging(0.978) TCGA-55-8302-01 3 42738563 42738563 C T HHATL Missense_Mutation p.A314T 0.40 deleterious(0) probably_damaging(0.909) TCGA-55-8302-01 3 43602878 43602878 A C ANO10 Missense_Mutation p.L437R 0.07 deleterious(0) probably_damaging(1) TCGA-55-8302-01 3 44776081 44776081 A T ZNF501 Silent p.G56G 0.34 TCGA-55-8302-01 3 48501867 48501867 G A ATRIP Missense_Mutation p.E472K 0.15 deleterious(0) probably_damaging(0.986) TCGA-55-8302-01 3 67053805 67053805 A G KBTBD8 Silent p.Q138Q 0.19 TCGA-55-8302-01 3 7340370 7340370 G T GRM7 Splice_Site p.X246_splice 0.14 TCGA-55-8302-01 3 7340371 7340371 G T GRM7 Missense_Mutation p.G246V 0.15 deleterious(0.03) probably_damaging(1) TCGA-55-8302-01 3 73432531 73432531 C A PDZRN3 Silent p.S1062S 0.36 TCGA-55-8302-01 3 73657782 73657782 C A PDZRN3 Silent p.L259L 0.12 TCGA-55-8302-01 3 74344343 74344343 A T CNTN3 Missense_Mutation p.S816T 0.16 deleterious(0) probably_damaging(0.951) TCGA-55-8302-01 3 77695254 77695254 G T ROBO2 3'UTR 0.38 TCGA-55-8302-01 3 98188785 98188785 G A OR5K1 Missense_Mutation p.R122H 0.21 deleterious(0.01) possibly_damaging(0.88) TCGA-55-8302-01 4 100340237 100340237 G T ADH7 Missense_Mutation p.S309R 0.24 deleterious(0.01) probably_damaging(0.939) TCGA-55-8302-01 4 100341944 100341944 G C ADH7 Missense_Mutation p.P211A 0.27 tolerated(0.08) benign(0.004) TCGA-55-8302-01 4 10445923 10445923 C A ZNF518B Missense_Mutation p.G677V 0.12 tolerated(0.07) probably_damaging(0.999) TCGA-55-8302-01 4 106604219 106604219 T A INTS12 Missense_Mutation p.T354S 0.12 tolerated_low_confidence(1) benign(0) TCGA-55-8302-01 4 113436144 113436144 G A NEUROG2 Missense_Mutation p.A163V 0.10 deleterious(0) probably_damaging(0.992) TCGA-55-8302-01 4 114257807 114257807 G T ANK2 Missense_Mutation p.L1222F 0.15 probably_damaging(1) TCGA-55-8302-01 4 120221744 120221744 G T C4orf3 Silent p.R116R 0.16 TCGA-55-8302-01 4 123147883 123147883 G T KIAA1109 Nonsense_Mutation p.G939* 0.16 TCGA-55-8302-01 4 146807068 146807068 C A ZNF827 Silent p.T503T 0.19 TCGA-55-8302-01 4 155507212 155507212 T A FGA Missense_Mutation p.T457S 0.12 tolerated(0.27) benign(0.268) TCGA-55-8302-01 4 164247649 164247649 C A NPY1R Nonsense_Mutation p.E20* 0.23 TCGA-55-8302-01 4 164394896 164394896 G T TKTL2 5'UTR 0.21 TCGA-55-8302-01 4 164394934 164394934 C A TKTL2 5'UTR 0.17 TCGA-55-8302-01 4 174448380 174448380 C A HAND2 3'UTR 0.18 TCGA-55-8302-01 4 175898619 175898619 G - ADAM29 Frame_Shift_Del p.D649Tfs*6 0.15 TCGA-55-8302-01 4 183674632 183674632 T A TENM3 Missense_Mutation p.Y1298N 0.17 deleterious(0) benign(0.068) TCGA-55-8302-01 4 20482365 20482365 G T SLIT2 Missense_Mutation p.C165F 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-55-8302-01 4 3487294 3487294 C G DOK7 Silent p.A187A 0.10 TCGA-55-8302-01 4 43032481 43032481 C A GRXCR1 Missense_Mutation p.T266K 0.09 deleterious(0) probably_damaging(0.995) TCGA-55-8302-01 4 46252533 46252533 A T GABRA2 Missense_Mutation p.V383D 0.15 tolerated(0.33) benign(0.063) TCGA-55-8302-01 4 46314513 46314513 C A GABRA2 Missense_Mutation p.R159M 0.27 deleterious(0) probably_damaging(0.992) TCGA-55-8302-01 4 52862215 52862216 - A LRRC66 Frame_Shift_Ins p.Q325Sfs*33 0.11 TCGA-55-8302-01 4 52894182 52894183 - A SGCB Frame_Shift_Ins p.M235Ifs*6 0.09 TCGA-55-8302-01 4 54347997 54347997 C A LNX1 Missense_Mutation p.V459F 0.20 deleterious(0) possibly_damaging(0.852) TCGA-55-8302-01 4 5564843 5564843 C A EVC2 Splice_Site p.X1220_splice 0.14 TCGA-55-8302-01 4 55955877 55955877 C G KDR Silent p.L1095L 0.18 TCGA-55-8302-01 4 6080691 6080691 C T JAKMIP1 Missense_Mutation p.R426Q 0.09 deleterious(0.01) benign(0.216) TCGA-55-8302-01 4 6611597 6611597 G T MAN2B2 Silent p.G693G 0.12 TCGA-55-8302-01 4 70460332 70460332 C T UGT2A1 Silent p.V555V 0.17 TCGA-55-8302-01 4 72622629 72622629 C A GC Silent p.L297L 0.21 TCGA-55-8302-01 4 74005370 74005370 G A ANKRD17 Missense_Mutation p.P988L 0.15 benign(0.055) TCGA-55-8302-01 4 74277725 74277725 C A ALB Silent p.R242R 0.15 TCGA-55-8302-01 4 77003162 77003162 T C ART3 Silent p.F85F 0.24 TCGA-55-8302-01 4 87797498 87797498 G T RP11-397E7.2 RNA 0.17 TCGA-55-8302-01 4 99399939 99399939 C A TSPAN5 Missense_Mutation p.G158V 0.10 deleterious(0) probably_damaging(0.998) TCGA-55-8302-01 4 99399959 99399959 C A TSPAN5 Missense_Mutation p.W151C 0.10 deleterious(0.02) probably_damaging(0.984) TCGA-55-8302-01 5 1036406 1036406 C A NKD2 Silent p.R232R 0.30 TCGA-55-8302-01 5 11346562 11346562 C A CTNND2 Missense_Mutation p.S517I 0.07 deleterious(0.03) benign(0.358) TCGA-55-8302-01 5 11565145 11565145 G A CTNND2 Silent p.T66T 0.13 TCGA-55-8302-01 5 118573099 118573099 A T DMXL1 Missense_Mutation p.K2829M 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-8302-01 5 126753421 126753421 G T MEGF10 Missense_Mutation p.A408S 0.21 tolerated(0.25) benign(0.015) TCGA-55-8302-01 5 127595281 127595281 T C FBN2 Missense_Mutation p.T2869A 0.10 tolerated(0.53) benign(0.005) TCGA-55-8302-01 5 128442702 128442703 - T ISOC1 Frame_Shift_Ins p.A234Cfs*2 0.25 TCGA-55-8302-01 5 134191167 134191167 G A C5orf24 3'UTR 0.09 TCGA-55-8302-01 5 136972995 136972995 C A KLHL3 Missense_Mutation p.G437C 0.21 deleterious(0.02) probably_damaging(0.996) TCGA-55-8302-01 5 13820564 13820564 C A DNAH5 Missense_Mutation p.K2244N 0.18 benign(0.403) TCGA-55-8302-01 5 13922348 13922348 G A DNAH5 Silent p.L176L 0.14 TCGA-55-8302-01 5 139740341 139740341 C A SLC4A9 Missense_Mutation p.L83I 0.34 tolerated_low_confidence(0.35) benign(0.001) TCGA-55-8302-01 5 140166965 140166965 C A PCDHA1 Missense_Mutation p.P364T 0.24 tolerated_low_confidence(0.05) benign(0.045) TCGA-55-8302-01 5 140182333 140182333 G T PCDHA3 Silent p.V517V 0.28 TCGA-55-8302-01 5 140186793 140186793 C A PCDHA4 Missense_Mutation p.S7R 0.27 tolerated_low_confidence(0.54) benign(0.005) TCGA-55-8302-01 5 140215625 140215625 G T PCDHA7 Missense_Mutation p.V553L 0.22 tolerated_low_confidence(0.08) possibly_damaging(0.532) TCGA-55-8302-01 5 140572281 140572281 G T PCDHB10 Silent p.L52L 0.22 TCGA-55-8302-01 5 140868935 140868935 C A PCDHGC5 Missense_Mutation p.T43K 0.14 deleterious(0.01) probably_damaging(0.989) TCGA-55-8302-01 5 141324911 141324911 C A PCDH12 3'UTR 0.14 TCGA-55-8302-01 5 145551512 145551512 C A LARS Silent p.L85L 0.20 TCGA-55-8302-01 5 148743625 148743625 G T PCYOX1L Missense_Mutation p.G108C 0.18 deleterious(0) probably_damaging(0.996) TCGA-55-8302-01 5 149631614 149631614 G T CAMK2A Missense_Mutation p.P177T 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-8302-01 5 150696376 150696376 G A SLC36A2 3'UTR 0.25 TCGA-55-8302-01 5 150900904 150900904 C G FAT2 Silent p.T3750T 0.19 TCGA-55-8302-01 5 153149976 153149976 G T GRIA1 Splice_Site p.X767_splice 0.17 TCGA-55-8302-01 5 153835469 153835469 C A SAP30L Silent p.R145R 0.17 TCGA-55-8302-01 5 160753416 160753416 G T GABRB2 Missense_Mutation p.P384T 0.18 tolerated(0.16) benign(0.014) TCGA-55-8302-01 5 163256 163256 G T PLEKHG4B Silent p.G667G 0.11 TCGA-55-8302-01 5 16572213 16572213 T C FAM134B Splice_Site p.X107_splice 0.12 TCGA-55-8302-01 5 169469108 169469108 C T DOCK2 Missense_Mutation p.T1283I 0.36 tolerated(0.1) benign(0.001) TCGA-55-8302-01 5 170814864 170814864 G A NPM1 5'UTR 0.25 TCGA-55-8302-01 5 175305693 175305693 T A CPLX2 5'UTR 0.14 TCGA-55-8302-01 5 176730367 176730367 C T RAB24 5'UTR 0.17 TCGA-55-8302-01 5 176814841 176814841 T C SLC34A1 Missense_Mutation p.L204P 0.20 deleterious(0) probably_damaging(0.971) TCGA-55-8302-01 5 176916490 176916490 C A PDLIM7 Missense_Mutation p.R258L 0.18 tolerated(0.12) probably_damaging(1) TCGA-55-8302-01 5 179293039 179293039 C T TBC1D9B Intron 0.17 TCGA-55-8302-01 5 179320211 179320211 C A TBC1D9B Missense_Mutation p.K278N 0.16 deleterious(0) benign(0.302) TCGA-55-8302-01 5 180058774 180058774 C T FLT4 Silent p.L21L 0.18 TCGA-55-8302-01 5 180166120 180166120 C A OR2Y1 3'UTR 0.13 TCGA-55-8302-01 5 180377339 180377339 C A BTNL8 Missense_Mutation p.T433K 0.22 deleterious(0.01) probably_damaging(0.946) TCGA-55-8302-01 5 21802366 21802366 T C CDH12 Missense_Mutation p.Y389C 0.08 deleterious(0) probably_damaging(0.998) TCGA-55-8302-01 5 21817225 21817225 T A CDH12 Missense_Mutation p.K277N 0.14 tolerated(0.22) benign(0.019) TCGA-55-8302-01 5 23522833 23522833 A T PRDM9 Missense_Mutation p.S241C 0.11 deleterious(0) benign(0.354) TCGA-55-8302-01 5 23527589 23527589 C A PRDM9 Missense_Mutation p.H798N 0.12 deleterious(0) unknown(0) TCGA-55-8302-01 5 24488009 24488009 G T CDH10 Silent p.V710V 0.10 TCGA-55-8302-01 5 24535928 24535928 G T CDH10 Missense_Mutation p.T177N 0.23 deleterious(0) probably_damaging(0.951) TCGA-55-8302-01 5 31318112 31318112 T A CDH6 Intron 0.07 TCGA-55-8302-01 5 33576588 33576588 T A ADAMTS12 Missense_Mutation p.R1181S 0.06 tolerated(0.57) benign(0.007) TCGA-55-8302-01 5 33944855 33944855 C T SLC45A2 Silent p.L497L 0.10 TCGA-55-8302-01 5 38506050 38506050 C A LIFR Silent p.L416L 0.04 TCGA-55-8302-01 5 39341787 39341787 T C C9 Missense_Mutation p.I67V 0.13 tolerated(0.24) benign(0.252) TCGA-55-8302-01 5 40937673 40937673 C A C7 Missense_Mutation p.Q150K 0.08 tolerated(0.76) benign(0.002) TCGA-55-8302-01 5 41195937 41195937 G T C6 Silent p.R182R 0.22 TCGA-55-8302-01 5 41199916 41199916 G A C6 Silent p.C133C 0.12 TCGA-55-8302-01 5 42699934 42699934 G T GHR Missense_Mutation p.D150Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-55-8302-01 5 45262540 45262540 T C HCN1 Missense_Mutation p.Y719C 0.15 tolerated_low_confidence(0.08) probably_damaging(0.99) TCGA-55-8302-01 5 50090715 50090715 G - PARP8 Frame_Shift_Del p.G298Afs*7 0.17 TCGA-55-8302-01 5 5303727 5303727 G T ADAMTS16 Missense_Mutation p.A1012S 0.06 tolerated(0.35) benign(0.006) TCGA-55-8302-01 5 64814369 64814369 C A CENPK Missense_Mutation p.R248L 0.27 deleterious(0) probably_damaging(0.935) TCGA-55-8302-01 5 68505699 68505699 G T CENPH 3'UTR 0.15 TCGA-55-8302-01 5 70805455 70805455 G T BDP1 Missense_Mutation p.A846S 0.10 tolerated(0.32) benign(0.39) TCGA-55-8302-01 5 7706897 7706897 G A ADCY2 Missense_Mutation p.V384M 0.10 deleterious(0) probably_damaging(1) TCGA-55-8302-01 5 82940336 82940336 G T HAPLN1 Silent p.A207A 0.28 TCGA-55-8302-01 5 9066734 9066734 G A SEMA5A Missense_Mutation p.P700S 0.06 tolerated(0.43) benign(0.006) TCGA-55-8302-01 5 94114854 94114854 C A MCTP1 Missense_Mutation p.M857I 0.20 tolerated(0.29) benign(0.006) TCGA-55-8302-01 6 102266269 102266269 G T GRIK2 Missense_Mutation p.G410C 0.15 deleterious(0) probably_damaging(1) TCGA-55-8302-01 6 102503424 102503424 A G GRIK2 Missense_Mutation p.Y844C 0.14 deleterious(0) probably_damaging(0.95) TCGA-55-8302-01 6 109954241 109954241 C A AK9 Missense_Mutation p.R380L 0.15 deleterious(0.03) possibly_damaging(0.886) TCGA-55-8302-01 6 110768186 110768186 G A SLC22A16 Missense_Mutation p.R181C 0.11 deleterious(0) probably_damaging(1) TCGA-55-8302-01 6 121563371 121563371 G A TBC1D32 Silent p.F711F 0.12 TCGA-55-8302-01 6 128294836 128294836 C T PTPRK Missense_Mutation p.G1375E 0.12 tolerated(0.11) probably_damaging(0.999) TCGA-55-8302-01 6 129802491 129802491 G A LAMA2 Silent p.L2552L 0.16 TCGA-55-8302-01 6 135239731 135239731 C A ALDH8A1 Missense_Mutation p.G429V 0.16 tolerated(0.07) possibly_damaging(0.493) TCGA-55-8302-01 6 136888992 136888992 G A MAP3K5 Missense_Mutation p.L1180F 0.08 tolerated(0.71) possibly_damaging(0.725) TCGA-55-8302-01 6 147636782 147636782 G C STXBP5 Missense_Mutation p.E512Q 0.10 tolerated(0.1) benign(0.046) TCGA-55-8302-01 6 150240886 150240886 G A RAET1G Missense_Mutation p.A51V 0.15 tolerated(0.14) benign(0.057) TCGA-55-8302-01 6 150710557 150710557 A T IYD Missense_Mutation p.E83V 0.14 tolerated(0.12) benign(0.01) TCGA-55-8302-01 6 150710558 150710558 G T IYD Missense_Mutation p.E83D 0.15 tolerated(0.2) benign(0.004) TCGA-55-8302-01 6 160679514 160679514 G T SLC22A2 Nonsense_Mutation p.Y92* 0.16 TCGA-55-8302-01 6 161027524 161027524 C A LPA Missense_Mutation p.A924S 0.18 tolerated_low_confidence(0.25) probably_damaging(0.987) TCGA-55-8302-01 6 161127549 161127549 G T PLG Nonsense_Mutation p.E54* 0.15 TCGA-55-8302-01 6 161523749 161523749 G T MAP3K4 Missense_Mutation p.G1265V 0.23 deleterious(0.02) benign(0.118) TCGA-55-8302-01 6 18200802 18200802 G T KDM1B Nonsense_Mutation p.E320* 0.17 TCGA-55-8302-01 6 18572083 18572083 G T MIR548A1 RNA 0.26 TCGA-55-8302-01 6 26189097 26189097 C G HIST1H4D Missense_Mutation p.A70P 0.15 deleterious(0) probably_damaging(1) TCGA-55-8302-01 6 26205200 26205200 G A HIST1H4E 3'UTR 0.23 TCGA-55-8302-01 6 27778296 27778296 C A HIST1H3H 3'UTR 0.19 TCGA-55-8302-01 6 28501999 28501999 C - GPX5 3'UTR 0.12 TCGA-55-8302-01 6 29555968 29555968 C T OR2H2 Missense_Mutation p.L83F 0.17 tolerated(0.13) benign(0.02) TCGA-55-8302-01 6 30153775 30153775 C A TRIM26 Missense_Mutation p.V500L 0.12 deleterious(0) unknown(0) TCGA-55-8302-01 6 30297376 30297376 C G TRIM39 Silent p.L94L 0.19 TCGA-55-8302-01 6 33141523 33141523 C G COL11A2 Splice_Site p.X776_splice 0.16 TCGA-55-8302-01 6 335151 335151 C A DUSP22 Missense_Mutation p.P59Q 0.09 deleterious(0) possibly_damaging(0.766) TCGA-55-8302-01 6 35838058 35838058 C T SRPK1 Missense_Mutation p.E331K 0.15 tolerated(0.37) benign(0.002) TCGA-55-8302-01 6 38704920 38704920 A G DNAH8 Silent p.L63L 0.15 TCGA-55-8302-01 6 43538386 43538386 C A XPO5 Missense_Mutation p.L158F 0.21 deleterious(0.01) probably_damaging(1) TCGA-55-8302-01 6 44274950 44274950 C A AARS2 Intron 0.14 TCGA-55-8302-01 6 52664029 52664029 G T GSTA1 Silent p.R13R 0.16 TCGA-55-8302-01 6 5545418 5545418 G T FARS2 Missense_Mutation p.A304S 0.15 deleterious(0.01) possibly_damaging(0.75) TCGA-55-8302-01 6 56357041 56357041 C T DST Missense_Mutation p.R4291K 0.12 probably_damaging(0.997) TCGA-55-8302-01 6 56882024 56882024 A T BEND6 Missense_Mutation p.Q180L 0.20 tolerated(0.32) possibly_damaging(0.507) TCGA-55-8302-01 6 64410279 64410279 G C PHF3 Missense_Mutation p.D1008H 0.22 tolerated(0.08) probably_damaging(0.999) TCGA-55-8302-01 6 69758160 69758160 T A BAI3 Missense_Mutation p.W731R 0.14 deleterious(0) probably_damaging(0.999) TCGA-55-8302-01 6 70386411 70386411 T G LMBRD1 Silent p.T480T 0.15 TCGA-55-8302-01 6 71234773 71234773 T C FAM135A Silent p.S662S 0.18 TCGA-55-8302-01 6 74325056 74325056 T A SLC17A5 Nonsense_Mutation p.R365* 0.20 TCGA-55-8302-01 6 7575675 7575675 C T DSP Nonsense_Mutation p.Q862* 0.11 TCGA-55-8302-01 6 75994418 75994418 C A TMEM30A 5'UTR 0.20 TCGA-55-8302-01 6 84865082 84865082 C A KIAA1009 Nonsense_Mutation p.E977* 0.16 TCGA-55-8302-01 6 85447080 85447080 G C TBX18 Missense_Mutation p.P383A 0.11 tolerated(0.05) benign(0.001) TCGA-55-8302-01 6 91246079 91246079 C A MAP3K7 Missense_Mutation p.V445L 0.19 tolerated(0.8) benign(0.003) TCGA-55-8302-01 6 97561769 97561769 G T KLHL32 Silent p.L246L 0.16 TCGA-55-8302-01 7 100386939 100386939 G C ZAN Missense_Mutation p.V2442L 0.29 unknown(0) TCGA-55-8302-01 7 103191726 103191726 C G RELN Silent p.S2030S 0.19 TCGA-55-8302-01 7 103293053 103293053 G A RELN Missense_Mutation p.H570Y 0.08 tolerated(0.32) probably_damaging(0.985) TCGA-55-8302-01 7 106508129 106508129 G T PIK3CG Missense_Mutation p.E41D 0.27 tolerated(0.26) benign(0.18) TCGA-55-8302-01 7 106508133 106508133 G T PIK3CG Missense_Mutation p.V43L 0.15 tolerated(0.11) benign(0.049) TCGA-55-8302-01 7 107836279 107836279 G T NRCAM Silent p.L463L 0.11 TCGA-55-8302-01 7 113520140 113520140 C A PPP1R3A Missense_Mutation p.R336I 0.17 deleterious(0) possibly_damaging(0.873) TCGA-55-8302-01 7 113558280 113558280 C A PPP1R3A Missense_Mutation p.V258L 0.23 tolerated(0.06) benign(0.043) TCGA-55-8302-01 7 11418736 11418737 - TGCTG THSD7A Frame_Shift_Ins p.G1588Qfs*19 0.12 TCGA-55-8302-01 7 119915493 119915493 C A KCND2 Silent p.A269A 0.07 TCGA-55-8302-01 7 122635088 122635088 C A TAS2R16 Missense_Mutation p.A201S 0.17 tolerated(0.4) benign(0.047) TCGA-55-8302-01 7 123594289 123594289 C A SPAM1 Missense_Mutation p.P222Q 0.13 deleterious(0) probably_damaging(1) TCGA-55-8302-01 7 127235705 127235705 G T FSCN3 Missense_Mutation p.M163I 0.16 tolerated(0.26) benign(0) TCGA-55-8302-01 7 127235730 127235730 G T FSCN3 Missense_Mutation p.V172F 0.06 deleterious(0) possibly_damaging(0.526) TCGA-55-8302-01 7 127255638 127255638 C T PAX4 5'UTR 0.28 TCGA-55-8302-01 7 128454725 128454725 C A CCDC136 Missense_Mutation p.Q933K 0.39 deleterious(0) probably_damaging(0.998) TCGA-55-8302-01 7 128486491 128486491 G A FLNC Silent p.K1367K 0.21 TCGA-55-8302-01 7 128846363 128846363 G T SMO Missense_Mutation p.R400L 0.18 deleterious(0) probably_damaging(0.942) TCGA-55-8302-01 7 129940699 129940699 G T CPA4 Missense_Mutation p.G110V 0.06 tolerated(0.25) benign(0.021) TCGA-55-8302-01 7 136912742 136912742 T A PTN 3'UTR 0.26 TCGA-55-8302-01 7 138863263 138863263 T A TTC26 Missense_Mutation p.S387R 0.10 deleterious(0.05) benign(0.016) TCGA-55-8302-01 7 142139430 142139430 C A TRBV7-6 Silent p.L65L 0.11 TCGA-55-8302-01 7 142570162 142570162 C A TRPV6 Nonsense_Mutation p.G620* 0.10 TCGA-55-8302-01 7 142983158 142983158 C A TMEM139 Silent p.T36T 0.12 TCGA-55-8302-01 7 142989754 142989754 G A CASP2 Silent p.E146E 0.08 TCGA-55-8302-01 7 143657798 143657798 C A OR2F1 Silent p.L245L 0.08 TCGA-55-8302-01 7 143884192 143884192 C A ARHGEF35 Missense_Mutation p.V429L 0.10 tolerated(0.32) benign(0.001) TCGA-55-8302-01 7 146829394 146829394 A G CNTNAP2 Missense_Mutation p.T381A 0.09 tolerated(0.13) benign(0.017) TCGA-55-8302-01 7 148112634 148112634 G T CNTNAP2 Missense_Mutation p.D1308Y 0.09 deleterious(0) probably_damaging(0.976) TCGA-55-8302-01 7 154684051 154684051 C A DPP6 Missense_Mutation p.P820Q 0.15 deleterious(0) probably_damaging(1) TCGA-55-8302-01 7 2952951 2952951 C T CARD11 Missense_Mutation p.G997S 0.14 tolerated(0.57) possibly_damaging(0.78) TCGA-55-8302-01 7 31792775 31792775 C A PDE1C 3'UTR 0.23 TCGA-55-8302-01 7 38369982 38369982 G T TRGV8 Missense_Mutation p.R106S 0.05 tolerated(1) benign(0) TCGA-55-8302-01 7 43483875 43483875 C A HECW1 Silent p.P368P 0.20 TCGA-55-8302-01 7 44579865 44579865 T A NPC1L1 Missense_Mutation p.E44V 0.22 deleterious(0.01) benign(0.028) TCGA-55-8302-01 7 47847867 47847867 G A PKD1L1 Missense_Mutation p.T2602I 0.08 deleterious(0) possibly_damaging(0.46) TCGA-55-8302-01 7 47894583 47894583 G T PKD1L1 Missense_Mutation p.H1586N 0.23 deleterious(0.01) probably_damaging(1) TCGA-55-8302-01 7 5338648 5338648 C T SLC29A4 Silent p.N304N 0.14 TCGA-55-8302-01 7 55991392 55991392 G T MRPS17 Missense_Mutation p.G90C 0.11 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-55-8302-01 7 63797293 63797293 G A ZNF736 Missense_Mutation p.M53I 0.10 tolerated(1) benign(0) TCGA-55-8302-01 7 64167706 64167706 A G ZNF107 Missense_Mutation p.T342A 0.08 tolerated(0.94) benign(0.045) TCGA-55-8302-01 7 70800599 70800599 C A WBSCR17 Missense_Mutation p.A101D 0.11 deleterious(0.04) benign(0.29) TCGA-55-8302-01 7 73101384 73101384 G T WBSCR22 Missense_Mutation p.Q107H 0.08 tolerated(0.23) probably_damaging(0.963) TCGA-55-8302-01 7 76054523 76054523 T A ZP3 Missense_Mutation p.L81Q 0.16 tolerated(0.09) benign(0.285) TCGA-55-8302-01 7 77797303 77797303 G T MAGI2 Silent p.I842I 0.10 TCGA-55-8302-01 7 81350158 81350158 A G HGF Missense_Mutation p.Y392H 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-8302-01 7 81374416 81374416 C T HGF Missense_Mutation p.G216R 0.09 deleterious(0) probably_damaging(0.991) TCGA-55-8302-01 7 86824377 86824377 C A DMTF1 Nonsense_Mutation p.S735* 0.12 TCGA-55-8302-01 7 87179487 87179487 C A ABCB1 Missense_Mutation p.M450I 0.11 tolerated(0.31) benign(0.002) TCGA-55-8302-01 7 88963284 88963284 C T ZNF804B Missense_Mutation p.H330Y 0.28 tolerated(0.08) benign(0.014) TCGA-55-8302-01 7 90419929 90419929 A C CDK14 Missense_Mutation p.Q151P 0.13 deleterious(0) possibly_damaging(0.674) TCGA-55-8302-01 7 90419930 90419930 G T CDK14 Missense_Mutation p.Q151H 0.14 deleterious(0.03) possibly_damaging(0.879) TCGA-55-8302-01 7 96339148 96339148 C G SHFM1 5'UTR 0.15 TCGA-55-8302-01 7 99123877 99123877 A C ZKSCAN5 Missense_Mutation p.Q405P 0.08 tolerated(0.11) benign(0.039) TCGA-55-8302-01 7 99688224 99688226 ATC - COPS6 In_Frame_Del p.I146del 0.11 TCGA-55-8302-01 8 104439440 104439440 G T DCAF13 Missense_Mutation p.G347V 0.07 deleterious(0) probably_damaging(0.999) TCGA-55-8302-01 8 104513213 104513213 G A RIMS2 Silent p.T33T 0.14 TCGA-55-8302-01 8 10465545 10465545 G T RP1L1 Missense_Mutation p.D2021E 0.08 unknown(0) TCGA-55-8302-01 8 104955137 104955137 C A RIMS2 Missense_Mutation p.P895Q 0.16 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-55-8302-01 8 105361013 105361013 C G DCSTAMP Missense_Mutation p.A78G 0.11 tolerated(0.1) benign(0.02) TCGA-55-8302-01 8 105441882 105441882 C A DPYS Missense_Mutation p.G281C 0.07 deleterious(0) probably_damaging(1) TCGA-55-8302-01 8 110131599 110131599 C T TRHR Missense_Mutation p.T371I 0.32 deleterious(0.03) possibly_damaging(0.547) TCGA-55-8302-01 8 113484840 113484840 A G CSMD3 Missense_Mutation p.I1792T 0.08 deleterious(0) probably_damaging(0.934) TCGA-55-8302-01 8 113697949 113697949 G C CSMD3 Missense_Mutation p.S723C 0.34 tolerated(0.1) probably_damaging(1) TCGA-55-8302-01 8 119945526 119945526 G A TNFRSF11B Missense_Mutation p.S15F 0.19 tolerated(0.08) benign(0.398) TCGA-55-8302-01 8 120613651 120613651 C A ENPP2 Silent p.L295L 0.14 TCGA-55-8302-01 8 120613653 120613653 G T ENPP2 Missense_Mutation p.L295M 0.14 deleterious(0.04) probably_damaging(1) TCGA-55-8302-01 8 126051098 126051098 C G KIAA0196 Missense_Mutation p.A1020P 0.13 deleterious(0.02) probably_damaging(0.951) TCGA-55-8302-01 8 126090979 126090979 C T KIAA0196 Splice_Site p.X237_splice 0.23 TCGA-55-8302-01 8 131414146 131414146 T C ASAP1 Missense_Mutation p.D15G 0.10 tolerated_low_confidence(0.43) unknown(0) TCGA-55-8302-01 8 133898950 133898950 C T TG Nonsense_Mutation p.R445* 0.05 TCGA-55-8302-01 8 139160904 139160904 T A FAM135B Nonsense_Mutation p.K1103* 0.19 TCGA-55-8302-01 8 141762406 141762406 C T PTK2 Missense_Mutation p.A448T 0.10 tolerated(0.36) benign(0.048) TCGA-55-8302-01 8 143958546 143958546 G C CYP11B1 Missense_Mutation p.A163G 0.13 tolerated(0.38) benign(0.002) TCGA-55-8302-01 8 144126080 144126080 C T C8orf31 Silent p.A67A 0.17 TCGA-55-8302-01 8 144660049 144660049 C A NAPRT1 Silent p.R97R 0.08 TCGA-55-8302-01 8 144942032 144942032 C G EPPK1 Missense_Mutation p.W1797S 0.15 probably_damaging(0.941) TCGA-55-8302-01 8 1497084 1497084 C G DLGAP2 Missense_Mutation p.H75Q 0.17 tolerated(0.92) possibly_damaging(0.815) TCGA-55-8302-01 8 1728532 1728532 C G CLN8 Missense_Mutation p.D220E 0.06 tolerated(0.64) benign(0.017) TCGA-55-8302-01 8 20110501 20110501 C G LZTS1 Missense_Mutation p.G314A 0.11 tolerated(0.74) benign(0.001) TCGA-55-8302-01 8 2796240 2796240 C G CSMD1 Missense_Mutation p.G3521A 0.27 probably_damaging(0.999) TCGA-55-8302-01 8 36768521 36768521 C A KCNU1 Missense_Mutation p.P802H 0.18 deleterious(0.01) possibly_damaging(0.784) TCGA-55-8302-01 8 49832867 49832867 A T SNAI2 Missense_Mutation p.N71K 0.14 tolerated(0.88) benign(0) TCGA-55-8302-01 8 51442778 51442778 T A SNTG1 Missense_Mutation p.C170S 0.19 tolerated(0.32) benign(0.044) TCGA-55-8302-01 8 67813535 67813535 C A MCMDC2 Missense_Mutation p.T574K 0.16 tolerated(0.05) possibly_damaging(0.872) TCGA-55-8302-01 8 6793493 6793493 C - DEFA4 3'UTR 0.22 TCGA-55-8302-01 8 68151123 68151123 C A ARFGEF1 Missense_Mutation p.E995D 0.11 deleterious(0) probably_damaging(0.998) TCGA-55-8302-01 8 77617482 77617482 A T ZFHX4 Missense_Mutation p.S387C 0.10 possibly_damaging(0.843) TCGA-55-8302-01 8 77618294 77618294 G T ZFHX4 Missense_Mutation p.Q657H 0.15 benign(0.387) TCGA-55-8302-01 8 77620141 77620141 A G ZFHX4 Missense_Mutation p.N984S 0.10 possibly_damaging(0.486) TCGA-55-8302-01 8 77766753 77766753 C A ZFHX4 Silent p.P2532P 0.18 TCGA-55-8302-01 8 8175844 8175844 C A SGK223 Silent p.L1347L 0.25 TCGA-55-8302-01 8 95547223 95547223 C A KIAA1429 Missense_Mutation p.G110C 0.15 deleterious(0) probably_damaging(1) TCGA-55-8302-01 8 95547224 95547224 A T KIAA1429 Missense_Mutation p.D109E 0.16 deleterious(0) probably_damaging(0.986) TCGA-55-8302-01 9 107380248 107380248 A G OR13C9 Missense_Mutation p.S80P 0.26 tolerated(0.33) benign(0.002) TCGA-55-8302-01 9 107583765 107583765 G A ABCA1 Missense_Mutation p.P951S 0.06 deleterious(0) probably_damaging(1) TCGA-55-8302-01 9 113169695 113169695 G T SVEP1 Missense_Mutation p.R2729S 0.11 benign(0.231) TCGA-55-8302-01 9 119461127 119461127 G A TRIM32 Missense_Mutation p.G369E 0.24 deleterious(0) probably_damaging(0.999) TCGA-55-8302-01 9 120476869 120476869 G T TLR4 Missense_Mutation p.W821C 0.25 deleterious(0) possibly_damaging(0.76) TCGA-55-8302-01 9 125154560 125154560 C A PTGS1 Missense_Mutation p.P513T 0.24 tolerated(0.08) benign(0.078) TCGA-55-8302-01 9 125377921 125377921 T C OR1Q1 Missense_Mutation p.M302T 0.14 tolerated(0.18) benign(0.01) TCGA-55-8302-01 9 127255309 127255309 C A NR5A1 Missense_Mutation p.E330D 0.33 deleterious(0.01) possibly_damaging(0.467) TCGA-55-8302-01 9 131331147 131331147 G C SPTAN1 Missense_Mutation p.E112Q 0.07 tolerated(0.39) benign(0.017) TCGA-55-8302-01 9 133932494 133932494 C T LAMC3 Silent p.P706P 0.26 TCGA-55-8302-01 9 134497325 134497325 T C RAPGEF1 Missense_Mutation p.Q589R 0.09 tolerated(0.15) benign(0.399) TCGA-55-8302-01 9 135251420 135251420 T C TTF1 Missense_Mutation p.Y867C 0.27 deleterious(0.03) benign(0.076) TCGA-55-8302-01 9 137591910 137591910 G T COL5A1 Missense_Mutation p.G145W 0.23 probably_damaging(1) TCGA-55-8302-01 9 139306551 139306551 A T PMPCA Silent p.T58T 0.15 TCGA-55-8302-01 9 140082506 140082506 C A ANAPC2 Missense_Mutation p.R56L 0.08 tolerated(0.17) benign(0.057) TCGA-55-8302-01 9 34971541 34971541 C A KIAA1045 Silent p.L82L 0.41 TCGA-55-8302-01 9 69113595 69113595 A T RP11-87H9.3 5'Flank 0.15 TCGA-55-8302-01 9 77354766 77354766 C T TRPM6 Missense_Mutation p.S1787N 0.14 deleterious(0) probably_damaging(0.952) TCGA-55-8302-01 9 79469085 79469085 C T PRUNE2 Missense_Mutation p.G26R 0.16 deleterious(0) probably_damaging(1) TCGA-55-8302-01 9 86586853 86586853 C A HNRNPK Silent p.R299R 0.07 TCGA-55-8302-01 9 90501058 90501058 C A SPATA31E1 Silent p.S552S 0.15 TCGA-55-8302-01 9 97535421 97535421 A G C9orf3 Missense_Mutation p.N312S 0.15 deleterious(0.04) benign(0.292) TCGA-55-8302-01 9 99403879 99403879 C A AAED1 3'UTR 0.23 TCGA-55-8302-01 X 100808177 100808177 G A ARMCX1 Silent p.P88P 0.11 TCGA-55-8302-01 X 101576761 101576761 C A NXF2 Silent p.A419A 0.19 TCGA-55-8302-01 X 102528794 102528794 G A TCEAL5 3'UTR 0.52 TCGA-55-8302-01 X 105449725 105449725 A T MUM1L1 Missense_Mutation p.R100S 0.22 tolerated(0.1) benign(0.01) TCGA-55-8302-01 X 107844671 107844671 G C COL4A5 Missense_Mutation p.G666A 0.13 unknown(0) TCGA-55-8302-01 X 117528039 117528039 C G WDR44 Missense_Mutation p.S283C 0.15 tolerated(0.09) benign(0.005) TCGA-55-8302-01 X 123637428 123637428 T G TENM1 Missense_Mutation p.I1143L 0.40 tolerated(0.27) benign(0.002) TCGA-55-8302-01 X 12704279 12704279 G A FRMPD4 Missense_Mutation p.G213R 0.06 deleterious(0) probably_damaging(1) TCGA-55-8302-01 X 12905990 12905990 C A TLR7 Missense_Mutation p.T788N 0.42 tolerated(0.41) benign(0.007) TCGA-55-8302-01 X 129171501 129171501 G T BCORL1 Missense_Mutation p.G1489C 0.35 probably_damaging(0.997) TCGA-55-8302-01 X 129771232 129771232 G A ENOX2 Silent p.L457L 0.09 TCGA-55-8302-01 X 130417038 130417038 C A IGSF1 Missense_Mutation p.D290Y 0.26 deleterious(0.04) probably_damaging(0.923) TCGA-55-8302-01 X 134033565 134033565 C A MOSPD1 Splice_Site 0.16 TCGA-55-8302-01 X 135288701 135288701 C T FHL1 Missense_Mutation p.A37V 0.30 deleterious(0) probably_damaging(0.999) TCGA-55-8302-01 X 136649433 136649433 C T ZIC3 Missense_Mutation p.R195C 0.26 deleterious(0.02) probably_damaging(0.925) TCGA-55-8302-01 X 147967504 147967504 G T AFF2 Nonsense_Mutation p.E450* 0.15 TCGA-55-8302-01 X 1718147 1718147 G T AKAP17A Missense_Mutation p.R325M 0.17 deleterious(0) unknown(0) TCGA-55-8302-01 X 26157440 26157440 C T MAGEB18 Missense_Mutation p.S113L 0.16 tolerated(1) benign(0) TCGA-55-8302-01 X 27766501 27766501 T A DCAF8L2 Missense_Mutation p.W497R 0.21 deleterious(0) probably_damaging(0.998) TCGA-55-8302-01 X 3238844 3238844 T A MXRA5 Missense_Mutation p.S1628C 0.45 tolerated(0.05) possibly_damaging(0.838) TCGA-55-8302-01 X 34149387 34149387 G C FAM47A Missense_Mutation p.L337V 0.26 tolerated(0.33) probably_damaging(0.953) TCGA-55-8302-01 X 40523721 40523721 G A MED14 Missense_Mutation p.P1096S 0.33 tolerated(0.2) probably_damaging(0.999) TCGA-55-8302-01 X 41203611 41203611 G A DDX3X Silent p.V328V 0.42 TCGA-55-8302-01 X 53115057 53115059 AAC - TSPYL2 In_Frame_Del p.N496del 0.47 TCGA-55-8302-01 X 53573739 53573739 C A HUWE1 Missense_Mutation p.G3562W 0.41 unknown(0) TCGA-55-8302-01 X 54786298 54786298 G A ITIH6 Silent p.I322I 0.09 TCGA-55-8302-01 X 57619061 57619061 G T ZXDB Missense_Mutation p.A194S 0.44 tolerated(0.21) benign(0.004) TCGA-55-8302-01 X 78427054 78427054 G T GPR174 Missense_Mutation p.V184F 0.45 deleterious(0.03) benign(0.292) TCGA-55-8302-01 X 83116205 83116205 G C CYLC1 Missense_Mutation p.R5S 0.31 tolerated(0.1) benign(0.158) TCGA-55-8302-01 X 85950162 85950162 A G DACH2 Missense_Mutation p.Q304R 0.50 deleterious(0.02) benign(0.348) TCGA-55-8302-01 X 86069769 86069769 G T DACH2 Missense_Mutation p.R539L 0.37 tolerated(0.13) possibly_damaging(0.635) TCGA-55-8505-01 10 133107514 133107514 T C TCERG1L Missense_Mutation p.T131A 0.10 tolerated(0.36) benign(0.002) TCGA-55-8505-01 11 102465485 102465485 A C MMP20 Missense_Mutation p.I319M 0.16 deleterious(0) benign(0.408) TCGA-55-8505-01 11 66238754 66238754 G A PELI3 Missense_Mutation p.R89Q 0.10 tolerated(0.12) benign(0.411) TCGA-55-8505-01 12 110385177 110385177 C T GIT2 Missense_Mutation p.G509S 0.15 tolerated(0.29) benign(0.081) TCGA-55-8505-01 12 29474808 29474808 C T FAR2 Missense_Mutation p.T403M 0.18 deleterious(0.03) probably_damaging(0.99) TCGA-55-8505-01 12 46355521 46355521 G A SCAF11 Missense_Mutation p.H61Y 0.08 deleterious(0) probably_damaging(1) TCGA-55-8505-01 12 53207742 53207742 G T KRT4 Missense_Mutation p.S34Y 0.14 tolerated(0.06) probably_damaging(0.999) TCGA-55-8505-01 12 56514721 56514721 T C ZC3H10 Silent p.L125L 0.24 TCGA-55-8505-01 12 70004097 70004097 G A LRRC10 Silent p.L174L 0.10 TCGA-55-8505-01 14 25076910 25076910 C T GZMH Missense_Mutation p.E83K 0.10 deleterious(0) probably_damaging(0.998) TCGA-55-8505-01 15 25430615 25430615 G T SNORD115-10 5'Flank 0.17 TCGA-55-8505-01 15 57910304 57910304 C G MYZAP Nonsense_Mutation p.S79* 0.11 TCGA-55-8505-01 16 81066394 81066394 C T CENPN 3'UTR 0.25 TCGA-55-8505-01 16 89245906 89245906 G A CDH15 Missense_Mutation p.R42H 0.07 deleterious(0) probably_damaging(0.999) TCGA-55-8505-01 18 63548012 63548012 C G CDH7 Missense_Mutation p.S747C 0.12 deleterious(0) probably_damaging(1) TCGA-55-8505-01 19 10610133 10610133 G A KEAP1 Nonsense_Mutation p.Q193* 0.30 TCGA-55-8505-01 1 169267939 169267939 G C NME7 Missense_Mutation p.A168G 0.10 tolerated(0.14) possibly_damaging(0.582) TCGA-55-8505-01 1 170705355 170705355 G C PRRX1 3'UTR 0.20 TCGA-55-8505-01 1 201437845 201437845 G A PHLDA3 Nonsense_Mutation p.Q24* 0.19 TCGA-55-8505-01 1 228459861 228459861 C T OBSCN Silent p.D1975D 0.21 TCGA-55-8505-01 1 247835492 247835492 C G OR13G1 Silent p.P284P 0.22 TCGA-55-8505-01 1 9781597 9781597 G C PIK3CD Missense_Mutation p.R636P 0.14 deleterious(0) probably_damaging(1) TCGA-55-8505-01 20 42695418 42695418 C G TOX2 Missense_Mutation p.P469A 0.17 deleterious(0.03) probably_damaging(0.994) TCGA-55-8505-01 20 56137915 56137915 C T PCK1 Silent p.V190V 0.24 TCGA-55-8505-01 2 105990143 105990143 G A FHL2 Silent p.C68C 0.22 TCGA-55-8505-01 2 179459236 179459236 C G TTN Missense_Mutation p.E19329Q 0.18 TCGA-55-8505-01 2 61298781 61298781 C T KIAA1841 Missense_Mutation p.S64L 0.21 tolerated(0.67) benign(0.06) TCGA-55-8505-01 2 79313557 79313557 G A REG1B Missense_Mutation p.S86L 0.15 deleterious(0.02) possibly_damaging(0.698) TCGA-55-8505-01 2 96964641 96964641 G C SNRNP200 Missense_Mutation p.A265G 0.21 tolerated(0.12) probably_damaging(0.999) TCGA-55-8505-01 3 12645699 12645699 G A RAF1 Missense_Mutation p.S257L 0.26 deleterious(0.01) benign(0.226) TCGA-55-8505-01 3 52536035 52536035 C T STAB1 Silent p.G115G 0.11 TCGA-55-8505-01 3 62385096 62385096 G A CADPS Silent p.D1349D 0.19 TCGA-55-8505-01 4 120160999 120160999 A G USP53 Missense_Mutation p.T29A 0.21 deleterious(0.02) probably_damaging(1) TCGA-55-8505-01 4 152070686 152070686 C G SH3D19 Missense_Mutation p.G315R 0.11 deleterious(0.04) possibly_damaging(0.774) TCGA-55-8505-01 6 27839923 27839923 C G HIST1H3I Missense_Mutation p.K57N 0.11 deleterious_low_confidence(0) benign(0.047) TCGA-55-8505-01 6 96651666 96651666 G T FUT9 Missense_Mutation p.S212I 0.11 deleterious(0.01) benign(0.063) TCGA-55-8505-01 7 100033016 100033016 G C PPP1R35 Silent p.L243L 0.23 TCGA-55-8505-01 7 117024807 117024807 C T ASZ1 Silent p.E220E 0.19 TCGA-55-8505-01 7 121650424 121650424 A T PTPRZ1 Missense_Mutation p.I442F 0.15 tolerated(0.25) benign(0.082) TCGA-55-8505-01 7 141537820 141537820 G A PRSS37 Silent p.N90N 0.17 TCGA-55-8505-01 7 1482021 1482021 C A MICALL2 Silent p.R506R 0.17 TCGA-55-8505-01 8 35542149 35542149 C A UNC5D Silent p.R267R 0.09 TCGA-55-8505-01 8 39624673 39624673 A G ADAM2 Missense_Mutation p.L437P 0.05 deleterious(0.03) possibly_damaging(0.53) TCGA-55-8505-01 8 98863681 98863681 G A LAPTM4B Silent p.P311P 0.09 TCGA-55-8505-01 9 135464750 135464750 G A BARHL1 Silent p.A275A 0.26 TCGA-55-8505-01 9 135800990 135800990 A G TSC1 Missense_Mutation p.L116S 0.44 deleterious(0) probably_damaging(0.998) TCGA-55-8505-01 9 74587894 74587894 C T C9orf85 3'UTR 0.12 TCGA-55-8505-01 X 73072158 73072158 T C XIST RNA 0.46 TCGA-55-8506-01 10 101514356 101514356 T C CUTC Silent p.S224S 0.28 TCGA-55-8506-01 10 101591418 101591418 G T ABCC2 Silent p.S978S 0.32 TCGA-55-8506-01 10 102056843 102056843 C A PKD2L1 Missense_Mutation p.C360F 0.30 deleterious(0) probably_damaging(0.994) TCGA-55-8506-01 10 102283500 102283500 C A NDUFB8 3'UTR 0.33 TCGA-55-8506-01 10 104139347 104139347 C T GBF1 Missense_Mutation p.A1571V 0.12 deleterious(0) probably_damaging(0.99) TCGA-55-8506-01 10 104173627 104173627 C A PSD Missense_Mutation p.E484D 0.12 tolerated(0.13) benign(0.002) TCGA-55-8506-01 10 104176203 104176203 C - PSD Frame_Shift_Del p.G198Afs*19 0.17 TCGA-55-8506-01 10 105048117 105048117 G A INA Silent p.R397R 0.14 TCGA-55-8506-01 10 105200102 105200102 A C PDCD11 Missense_Mutation p.K1402Q 0.24 tolerated(0.12) benign(0.342) TCGA-55-8506-01 10 105215252 105215252 C G CALHM1 Missense_Mutation p.A270P 0.10 tolerated(0.31) benign(0.059) TCGA-55-8506-01 10 105218265 105218265 A T CALHM1 Missense_Mutation p.W82R 0.33 deleterious(0.05) probably_damaging(0.999) TCGA-55-8506-01 10 105362730 105362732 AGG - SH3PXD2A In_Frame_Del p.S720del 0.22 TCGA-55-8506-01 10 105762950 105762950 G T SLK Missense_Mutation p.A672S 0.28 tolerated(0.71) benign(0.066) TCGA-55-8506-01 10 105799217 105799217 G T COL17A1 Missense_Mutation p.P961H 0.25 probably_damaging(0.994) TCGA-55-8506-01 10 105971912 105971912 C A WDR96 Silent p.S196S 0.23 TCGA-55-8506-01 10 11505388 11505388 G T USP6NL Silent p.P530P 0.27 TCGA-55-8506-01 10 117045783 117045783 C A ATRNL1 Missense_Mutation p.S764Y 0.23 deleterious(0.01) possibly_damaging(0.851) TCGA-55-8506-01 10 118307992 118307992 A T PNLIP Nonsense_Mutation p.K108* 0.23 TCGA-55-8506-01 10 118458211 118458211 T A HSPA12A Nonsense_Mutation p.K161* 0.30 TCGA-55-8506-01 10 125426339 125426339 C A GPR26 Missense_Mutation p.A139D 0.26 tolerated(0.12) benign(0.021) TCGA-55-8506-01 10 126185553 126185553 G T LHPP Missense_Mutation p.G164V 0.21 deleterious(0) probably_damaging(0.946) TCGA-55-8506-01 10 127524887 127524887 C G BCCIP Intron 0.18 TCGA-55-8506-01 10 133930815 133930815 C T JAKMIP3 Missense_Mutation p.R124C 0.13 deleterious(0) probably_damaging(1) TCGA-55-8506-01 10 134008381 134008381 C A DPYSL4 Missense_Mutation p.L116M 0.27 deleterious(0.03) probably_damaging(0.976) TCGA-55-8506-01 10 134884576 134884576 C A GPR123 Silent p.T48T 0.27 TCGA-55-8506-01 10 135126413 135126413 G A ZNF511 3'UTR 0.18 TCGA-55-8506-01 10 135211981 135211982 - T MTG1 Frame_Shift_Ins p.T111Yfs*7 0.12 TCGA-55-8506-01 10 13702398 13702398 T C FRMD4A Missense_Mutation p.I606V 0.30 tolerated(0.32) benign(0.003) TCGA-55-8506-01 10 14996070 14996070 G A DCLRE1C 5'Flank 0.35 TCGA-55-8506-01 10 15256602 15256602 T A FAM171A1 Splice_Site p.X329_splice 0.28 TCGA-55-8506-01 10 17363173 17363173 G A ST8SIA6 Missense_Mutation p.P301S 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 10 17922615 17922615 C A MRC1L1 Missense_Mutation p.T933K 0.24 possibly_damaging(0.887) TCGA-55-8506-01 10 20290769 20290769 G A PLXDC2 Missense_Mutation p.A60T 0.27 tolerated_low_confidence(0.31) benign(0.001) TCGA-55-8506-01 10 22031067 22031067 T C MLLT10 3'UTR 0.19 TCGA-55-8506-01 10 24825714 24825714 G T KIAA1217 Missense_Mutation p.K1142N 0.24 deleterious(0) probably_damaging(0.972) TCGA-55-8506-01 10 25887286 25887286 G T GPR158 Nonsense_Mutation p.E911* 0.30 TCGA-55-8506-01 10 27538753 27538753 G T RP11-85G18.6 Intron 0.34 TCGA-55-8506-01 10 408511 408511 C A DIP2C Missense_Mutation p.G905C 0.26 deleterious(0.02) possibly_damaging(0.871) TCGA-55-8506-01 10 43015229 43015229 T A ZNF37BP RNA 0.33 TCGA-55-8506-01 10 43971253 43971253 A G ZNF487 5'UTR 0.21 TCGA-55-8506-01 10 47088052 47088052 C A NPY4R 3'UTR 0.25 TCGA-55-8506-01 10 50530945 50530945 C T C10orf71 Missense_Mutation p.P119S 0.09 tolerated(0.57) benign(0.407) TCGA-55-8506-01 10 50666958 50666958 T A ERCC6 Missense_Mutation p.Q1462L 0.34 deleterious(0.03) possibly_damaging(0.811) TCGA-55-8506-01 10 50678401 50678401 G A ERCC6 Missense_Mutation p.P1202L 0.27 tolerated(0.16) benign(0.001) TCGA-55-8506-01 10 51464713 51464713 G T AGAP7 Silent p.I581I 0.13 TCGA-55-8506-01 10 52575797 52575798 - T A1CF Frame_Shift_Ins p.N378Kfs*11 0.24 TCGA-55-8506-01 10 54528169 54528169 G - MBL2 Frame_Shift_Del p.Q159Rfs*40 0.23 TCGA-55-8506-01 10 55780176 55780176 C A PCDH15 Missense_Mutation p.A843S 0.28 deleterious(0) probably_damaging(1) TCGA-55-8506-01 10 60588635 60588635 T A BICC1 Missense_Mutation p.V970D 0.35 deleterious(0.03) possibly_damaging(0.786) TCGA-55-8506-01 10 61028385 61028385 G A FAM13C Silent p.T290T 0.22 TCGA-55-8506-01 10 61062615 61062615 C A FAM13C Missense_Mutation p.Q151H 0.32 deleterious(0) probably_damaging(0.919) TCGA-55-8506-01 10 63212914 63212914 G A TMEM26 5'UTR 0.14 TCGA-55-8506-01 10 64136037 64136037 C A ZNF365 Missense_Mutation p.P29T 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-8506-01 10 6528031 6528031 G A PRKCQ Missense_Mutation p.A289V 0.09 tolerated(0.05) possibly_damaging(0.566) TCGA-55-8506-01 10 69682685 69682685 A T HERC4 3'UTR 0.30 TCGA-55-8506-01 10 69925568 69925568 C T MYPN Silent p.H531H 0.19 TCGA-55-8506-01 10 70231740 70231740 C A DNA2 Missense_Mutation p.R47L 0.30 tolerated_low_confidence(0.23) benign(0.002) TCGA-55-8506-01 10 72307198 72307198 G C PALD1 Missense_Mutation p.R753P 0.18 deleterious(0) possibly_damaging(0.806) TCGA-55-8506-01 10 73046537 73046537 C A UNC5B Missense_Mutation p.A215D 0.27 deleterious(0) probably_damaging(0.995) TCGA-55-8506-01 10 73544654 73544654 G T CDH23 Missense_Mutation p.V1842L 0.18 tolerated(0.22) possibly_damaging(0.621) TCGA-55-8506-01 10 74034516 74034516 A G DDIT4 Missense_Mutation p.E90G 0.13 deleterious(0) possibly_damaging(0.902) TCGA-55-8506-01 10 74658610 74658610 G A OIT3 Missense_Mutation p.A84T 0.30 deleterious(0) probably_damaging(0.956) TCGA-55-8506-01 10 74912076 74912076 C A ECD Missense_Mutation p.R296L 0.25 deleterious(0.01) probably_damaging(0.975) TCGA-55-8506-01 10 75410668 75410668 G A SYNPO2L Intron 0.30 TCGA-55-8506-01 10 75865108 75865108 C T VCL Missense_Mutation p.P811S 0.18 tolerated(0.11) benign(0.345) TCGA-55-8506-01 10 76789343 76789343 G T KAT6B Silent p.T1587T 0.26 TCGA-55-8506-01 10 76797741 76797741 G A DUPD1 Silent p.D172D 0.19 TCGA-55-8506-01 10 79571778 79571778 T A DLG5 Missense_Mutation p.Q1409L 0.41 tolerated(0.94) probably_damaging(0.989) TCGA-55-8506-01 10 79584144 79584144 T A DLG5 Nonsense_Mutation p.K794* 0.48 TCGA-55-8506-01 10 79785864 79785864 G A POLR3A Silent p.L56L 0.13 TCGA-55-8506-01 10 8106086 8106086 G T GATA3 Missense_Mutation p.K303N 0.21 deleterious(0) possibly_damaging(0.907) TCGA-55-8506-01 10 82363435 82363435 G A SH2D4B Silent p.T248T 0.27 TCGA-55-8506-01 10 84118501 84118501 C T NRG3 Missense_Mutation p.T277M 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-55-8506-01 10 84745241 84745241 C A NRG3 Silent p.T657T 0.27 TCGA-55-8506-01 10 85956357 85956357 T A CDHR1 Missense_Mutation p.V83D 0.14 deleterious(0) probably_damaging(0.988) TCGA-55-8506-01 10 85993875 85993875 G T LRIT1 Silent p.P283P 0.28 TCGA-55-8506-01 10 86008673 86008673 C A RGR Missense_Mutation p.H82N 0.16 tolerated(0.33) benign(0.006) TCGA-55-8506-01 10 88477868 88477868 G A LDB3 Silent p.P613P 0.13 TCGA-55-8506-01 10 92631697 92631697 C A RPP30 5'Flank 0.30 TCGA-55-8506-01 10 93593609 93593609 G T TNKS2 Splice_Site p.X426_splice 0.10 TCGA-55-8506-01 10 93910 93910 C A TUBB8 Missense_Mutation p.G141V 0.17 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-55-8506-01 10 93914 93914 C A TUBB8 Missense_Mutation p.G140C 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-8506-01 10 94393441 94393441 T C KIF11 Silent p.S588S 0.20 TCGA-55-8506-01 10 97915953 97915953 G T ZNF518A Splice_Site 0.29 TCGA-55-8506-01 10 98118776 98118776 G T OPALIN 5'UTR 0.23 TCGA-55-8506-01 10 99150225 99150225 C T RRP12 Silent p.Q236Q 0.27 TCGA-55-8506-01 10 99504558 99504558 G T ZFYVE27 Missense_Mutation p.R114L 0.34 tolerated(0.09) benign(0.013) TCGA-55-8506-01 11 100999563 100999563 A T PGR Missense_Mutation p.L80Q 0.19 tolerated_low_confidence(0.11) possibly_damaging(0.528) TCGA-55-8506-01 11 101343050 101343050 A T TRPC6 Missense_Mutation p.F675I 0.10 deleterious(0) probably_damaging(0.997) TCGA-55-8506-01 11 102646042 102646042 G A MMP10 Nonsense_Mutation p.R315* 0.16 TCGA-55-8506-01 11 102667848 102667848 A C MMP1 Missense_Mutation p.H132Q 0.15 tolerated(0.22) benign(0.001) TCGA-55-8506-01 11 102826374 102826374 G A MMP13 Missense_Mutation p.P21S 0.15 deleterious(0) probably_damaging(0.957) TCGA-55-8506-01 11 103818454 103818454 T C PDGFD Splice_Site p.X171_splice 0.20 TCGA-55-8506-01 11 103907433 103907433 C T DDI1 5'UTR 0.14 TCGA-55-8506-01 11 103908164 103908164 C A DDI1 Missense_Mutation p.P205Q 0.28 deleterious(0) probably_damaging(0.98) TCGA-55-8506-01 11 104774272 104774272 G A RP11-693N9.2 RNA 0.33 TCGA-55-8506-01 11 10647847 10647847 G A MRVI1 Missense_Mutation p.P345L 0.20 tolerated(0.12) benign(0.006) TCGA-55-8506-01 11 107506439 107506439 G T ELMOD1 Missense_Mutation p.R123L 0.15 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 11 108593863 108593863 G T DDX10 Nonsense_Mutation p.E547* 0.27 TCGA-55-8506-01 11 1086417 1086417 C A MUC2 Missense_Mutation p.H1042Q 0.25 probably_damaging(0.996) TCGA-55-8506-01 11 111385572 111385572 G - C11orf88 Frame_Shift_Del p.G22Dfs*78 0.23 TCGA-55-8506-01 11 111844945 111844945 G T DIXDC1 Missense_Mutation p.R172L 0.16 tolerated(0.26) possibly_damaging(0.688) TCGA-55-8506-01 11 111899574 111899574 C A DLAT Missense_Mutation p.P189T 0.06 tolerated(0.09) possibly_damaging(0.603) TCGA-55-8506-01 11 113103001 113103001 G T NCAM1 Silent p.R499R 0.27 TCGA-55-8506-01 11 116661044 116661044 G - APOA5 Frame_Shift_Del p.R301Afs*37 0.20 TCGA-55-8506-01 11 116692268 116692268 C A APOA4 Missense_Mutation p.R169L 0.24 deleterious(0.01) possibly_damaging(0.905) TCGA-55-8506-01 11 117242024 117242024 G A CEP164 Missense_Mutation p.A332T 0.06 tolerated(0.14) benign(0.047) TCGA-55-8506-01 11 118370028 118370028 A G KMT2A Missense_Mutation p.E1991G 0.11 probably_damaging(0.954) TCGA-55-8506-01 11 118827670 118827670 C - UPK2 Frame_Shift_Del p.H52Tfs*9 0.18 TCGA-55-8506-01 11 119181508 119181508 T A MCAM Missense_Mutation p.K584M 0.22 deleterious(0) probably_damaging(0.94) TCGA-55-8506-01 11 119217243 119217243 C T MFRP 5'UTR 0.19 TCGA-55-8506-01 11 119548515 119548515 C T PVRL1 Silent p.K161K 0.17 TCGA-55-8506-01 11 120178191 120178191 C A POU2F3 Missense_Mutation p.S260Y 0.26 deleterious(0) possibly_damaging(0.632) TCGA-55-8506-01 11 121000389 121000389 G A TECTA Missense_Mutation p.G804R 0.29 deleterious(0.01) benign(0.075) TCGA-55-8506-01 11 121000390 121000390 G T TECTA Missense_Mutation p.G804V 0.29 deleterious(0) possibly_damaging(0.817) TCGA-55-8506-01 11 122650348 122650348 G A UBASH3B Silent p.A182A 0.19 TCGA-55-8506-01 11 122650349 122650349 G A UBASH3B Missense_Mutation p.E183K 0.19 deleterious(0.01) benign(0.427) TCGA-55-8506-01 11 122650363 122650363 G A UBASH3B Silent p.K187K 0.19 TCGA-55-8506-01 11 122720920 122720920 C A CRTAM Missense_Mutation p.P64H 0.20 tolerated(0.08) probably_damaging(0.957) TCGA-55-8506-01 11 122852304 122852304 G T BSX Missense_Mutation p.L26M 0.33 deleterious(0) probably_damaging(0.997) TCGA-55-8506-01 11 123847568 123847568 G A OR10S1 Silent p.R277R 0.13 TCGA-55-8506-01 11 124005729 124005729 G C VWA5A Missense_Mutation p.R449S 0.17 deleterious(0) possibly_damaging(0.885) TCGA-55-8506-01 11 124189627 124189627 G T OR8D2 Missense_Mutation p.A156D 0.22 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 11 124412852 124412852 C A OR8B12 Missense_Mutation p.R233S 0.20 deleterious_low_confidence(0.01) benign(0.108) TCGA-55-8506-01 11 124413269 124413269 T A OR8B12 Silent p.T94T 0.20 TCGA-55-8506-01 11 124481559 124481559 G C PANX3 Missense_Mutation p.R36P 0.20 deleterious(0) possibly_damaging(0.609) TCGA-55-8506-01 11 124624608 124624608 C A ESAM Missense_Mutation p.G220V 0.15 deleterious(0) probably_damaging(1) TCGA-55-8506-01 11 124749231 124749231 G A ROBO3 Missense_Mutation p.A1227T 0.21 tolerated_low_confidence(0.37) benign(0.01) TCGA-55-8506-01 11 124757055 124757055 G T ROBO4 Silent p.I751I 0.25 TCGA-55-8506-01 11 124857672 124857673 - C CCDC15 Frame_Shift_Ins p.K519Qfs*8 0.11 TCGA-55-8506-01 11 124955548 124955548 C G SLC37A2 Missense_Mutation p.S468C 0.16 tolerated(0.24) benign(0.005) TCGA-55-8506-01 11 125267917 125267917 C T PKNOX2 Missense_Mutation p.P183S 0.06 tolerated(0.11) benign(0.343) TCGA-55-8506-01 11 125298922 125298922 G C PKNOX2 Silent p.T317T 0.10 TCGA-55-8506-01 11 125301265 125301265 G T PKNOX2 Nonsense_Mutation p.E466* 0.11 TCGA-55-8506-01 11 125351440 125351440 G T FEZ1 Missense_Mutation p.S134Y 0.24 deleterious(0.01) probably_damaging(0.979) TCGA-55-8506-01 11 125475596 125475596 G T STT3A Missense_Mutation p.W194L 0.23 deleterious(0.01) possibly_damaging(0.491) TCGA-55-8506-01 11 126306759 126306759 G T KIRREL3 Missense_Mutation p.T500K 0.21 deleterious(0) benign(0.407) TCGA-55-8506-01 11 1269396 1269396 C A MUC5B Silent p.V3762V 0.27 TCGA-55-8506-01 11 129740010 129740010 C A NFRKB Silent p.L995L 0.25 TCGA-55-8506-01 11 130079567 130079567 G T ST14 Missense_Mutation p.G806V 0.21 deleterious(0) probably_damaging(1) TCGA-55-8506-01 11 132180119 132180119 G A NTM Missense_Mutation p.D259N 0.40 tolerated(0.05) possibly_damaging(0.668) TCGA-55-8506-01 11 134188564 134188564 C A GLB1L3 Missense_Mutation p.L607I 0.14 deleterious(0.01) probably_damaging(0.922) TCGA-55-8506-01 11 14991500 14991500 G T CALCA Missense_Mutation p.Q70K 0.26 tolerated(0.08) benign(0.037) TCGA-55-8506-01 11 15197613 15197613 C A INSC Missense_Mutation p.S175Y 0.50 tolerated(0.51) benign(0.189) TCGA-55-8506-01 11 1619313 1619313 A G KRTAP5-2 Silent p.C56C 0.28 TCGA-55-8506-01 11 16208413 16208413 C T SOX6 Silent p.A208A 0.26 TCGA-55-8506-01 11 16424226 16424226 C A SOX6 Intron 0.16 TCGA-55-8506-01 11 17552946 17552946 C T USH1C Missense_Mutation p.R83K 0.40 tolerated(0.06) probably_damaging(0.979) TCGA-55-8506-01 11 18028188 18028188 C G SERGEF Missense_Mutation p.C101S 0.31 tolerated(0.36) benign(0.379) TCGA-55-8506-01 11 1862434 1862434 G T TNNI2 Missense_Mutation p.E150D 0.21 tolerated(0.06) benign(0.033) TCGA-55-8506-01 11 18735861 18735861 G T IGSF22 Silent p.A587A 0.30 TCGA-55-8506-01 11 22301127 22301127 T A ANO5 Missense_Mutation p.M853K 0.18 deleterious(0) possibly_damaging(0.873) TCGA-55-8506-01 11 22380970 22380970 C A SLC17A6 Missense_Mutation p.A157D 0.27 deleterious(0.03) possibly_damaging(0.673) TCGA-55-8506-01 11 2435334 2435334 G A TRPM5 Missense_Mutation p.T616I 0.24 tolerated(0.09) possibly_damaging(0.76) TCGA-55-8506-01 11 27016637 27016637 G A FIBIN Silent p.E188E 0.27 TCGA-55-8506-01 11 27114810 27114810 C A BBOX1 Missense_Mutation p.L144I 0.21 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 11 3026597 3026597 C T CARS Missense_Mutation p.R739Q 0.32 tolerated(0.28) benign(0.004) TCGA-55-8506-01 11 30516853 30516853 C A MPPED2 Missense_Mutation p.G176C 0.38 deleterious(0) probably_damaging(1) TCGA-55-8506-01 11 31815228 31815228 G T PAX6 Nonsense_Mutation p.Y310* 0.12 TCGA-55-8506-01 11 320691 320692 - G IFITM3 Frame_Shift_Ins p.T42Dfs*44 0.10 TCGA-55-8506-01 11 32456445 32456445 C A WT1 Silent p.A149A 0.24 TCGA-55-8506-01 11 3392922 3392922 C T ZNF195 Silent p.T5T 0.11 TCGA-55-8506-01 11 36511395 36511395 C T TRAF6 Missense_Mutation p.G521E 0.12 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-55-8506-01 11 433392 433392 C T ANO9 Missense_Mutation p.R91H 0.16 tolerated(0.18) benign(0.017) TCGA-55-8506-01 11 44099448 44099448 G A ACCS Missense_Mutation p.M236I 0.15 tolerated(0.19) benign(0.002) TCGA-55-8506-01 11 44129707 44129707 C T EXT2 Missense_Mutation p.R182W 0.28 deleterious(0) possibly_damaging(0.877) TCGA-55-8506-01 11 44129708 44129708 G T EXT2 Missense_Mutation p.R182L 0.28 tolerated(0.06) benign(0.015) TCGA-55-8506-01 11 44286578 44286578 C T ALX4 Silent p.G354G 0.22 TCGA-55-8506-01 11 45827853 45827855 CTT - SLC35C1 In_Frame_Del p.F168del 0.11 TCGA-55-8506-01 11 45955607 45955607 G - PHF21A Frame_Shift_Del p.P652Lfs*104 0.19 TCGA-55-8506-01 11 46724532 46724532 A T ZNF408 Splice_Site p.X131_splice 0.27 TCGA-55-8506-01 11 46748344 46748344 C T F2 Missense_Mutation p.R363C 0.11 deleterious(0) probably_damaging(1) TCGA-55-8506-01 11 46893175 46893175 C A LRP4 Missense_Mutation p.W1531C 0.22 deleterious(0) probably_damaging(0.998) TCGA-55-8506-01 11 48186026 48186026 T C PTPRJ Missense_Mutation p.Y1272H 0.14 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 11 4903675 4903675 C A OR51T1 Nonsense_Mutation p.Y209* 0.28 TCGA-55-8506-01 11 5275536 5275536 G A HBG2 Missense_Mutation p.P101S 0.12 deleterious(0.03) possibly_damaging(0.614) TCGA-55-8506-01 11 5443456 5443456 A T OR51Q1 Missense_Mutation p.Q9L 0.29 tolerated(0.44) benign(0.199) TCGA-55-8506-01 11 5529023 5529023 C A UBQLN3 Missense_Mutation p.G589V 0.24 deleterious(0.01) possibly_damaging(0.779) TCGA-55-8506-01 11 55321907 55321907 T A OR4C15 Missense_Mutation p.M42K 0.28 deleterious_low_confidence(0) benign(0.013) TCGA-55-8506-01 11 5536688 5536688 T C UBQLNL Silent p.A328A 0.08 TCGA-55-8506-01 11 5537024 5537024 A T UBQLNL Silent p.L216L 0.27 TCGA-55-8506-01 11 55890587 55890587 G T OR8H3 Nonsense_Mutation p.G247* 0.29 TCGA-55-8506-01 11 56043651 56043651 C A OR5T1 Silent p.S179S 0.27 TCGA-55-8506-01 11 56086198 56086198 G T OR8K3 Missense_Mutation p.R139M 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.555) TCGA-55-8506-01 11 56113767 56113767 C A OR8K1 Missense_Mutation p.P85T 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-55-8506-01 11 56409692 56409692 A G OR5AP2 Missense_Mutation p.V75A 0.29 deleterious(0.05) possibly_damaging(0.529) TCGA-55-8506-01 11 56955003 56955003 C G LRRC55 3'UTR 0.42 TCGA-55-8506-01 11 57076593 57076593 G T TNKS1BP1 Missense_Mutation p.L1198M 0.10 tolerated(0.06) probably_damaging(0.976) TCGA-55-8506-01 11 57509596 57509596 G A C11orf31 Silent p.E92E 0.22 TCGA-55-8506-01 11 5757850 5757850 G T OR56B1 Missense_Mutation p.W35L 0.18 deleterious(0) probably_damaging(1) TCGA-55-8506-01 11 57886529 57886529 G A OR9I1 Silent p.L130L 0.33 TCGA-55-8506-01 11 57970986 57970987 - A OR1S2 Frame_Shift_Ins p.P223Lfs*59 0.15 TCGA-55-8506-01 11 58170604 58170604 A C OR5B3 Missense_Mutation p.N93K 0.23 deleterious_low_confidence(0.02) benign(0.019) TCGA-55-8506-01 11 58390330 58390330 G A CNTF Silent p.T35T 0.10 TCGA-55-8506-01 11 5862765 5862765 G T OR52E6 Silent p.A121A 0.17 TCGA-55-8506-01 11 59347647 59347647 C A OSBP Missense_Mutation p.K626N 0.25 deleterious(0) probably_damaging(1) TCGA-55-8506-01 11 59361694 59361694 C T OSBP Missense_Mutation p.R449H 0.20 deleterious(0) probably_damaging(1) TCGA-55-8506-01 11 59947304 59947304 A - MS4A6A Frame_Shift_Del p.F123Lfs*15 0.23 TCGA-55-8506-01 11 60285611 60285611 G T MS4A13 Nonsense_Mutation p.G19* 0.32 TCGA-55-8506-01 11 60610350 60610350 G A CCDC86 Silent p.K251K 0.19 TCGA-55-8506-01 11 609112 609112 G A PHRF1 Missense_Mutation p.R1218K 0.37 tolerated(0.92) benign(0.006) TCGA-55-8506-01 11 61079460 61079460 C G DDB1 Splice_Site p.X722_splice 0.29 TCGA-55-8506-01 11 612589 612589 G A IRF7 3'UTR 0.06 TCGA-55-8506-01 11 613338 613338 G A IRF7 Missense_Mutation p.R382W 0.13 deleterious(0.02) probably_damaging(0.976) TCGA-55-8506-01 11 61725666 61725666 C T BEST1 Missense_Mutation p.R195W 0.26 deleterious(0.02) probably_damaging(0.994) TCGA-55-8506-01 11 62292479 62292479 G A AHNAK Missense_Mutation p.P3137L 0.48 probably_damaging(1) TCGA-55-8506-01 11 62339102 62339102 C T EEF1G Silent p.V96V 0.24 TCGA-55-8506-01 11 62677830 62677831 - C CHRM1 Frame_Shift_Ins p.A248Gfs*2 0.22 TCGA-55-8506-01 11 6292377 6292377 C T CCKBR Silent p.S316S 0.32 TCGA-55-8506-01 11 64109510 64109510 G A CCDC88B Silent p.R240R 0.12 TCGA-55-8506-01 11 64514188 64514188 C A PYGM Missense_Mutation p.E824D 0.23 tolerated(0.69) benign(0.003) TCGA-55-8506-01 11 64564481 64564481 G A MAP4K2 Silent p.H460H 0.15 TCGA-55-8506-01 11 6472177 6472178 - T TRIM3 Frame_Shift_Ins p.N605Kfs*15 0.22 TCGA-55-8506-01 11 64825656 64825656 C T NAALADL1 Silent p.L84L 0.13 TCGA-55-8506-01 11 64938899 64938899 G T SPDYC Missense_Mutation p.R43L 0.29 tolerated(0.65) benign(0.029) TCGA-55-8506-01 11 65108447 65108447 C T DPF2 Silent p.S68S 0.15 TCGA-55-8506-01 11 65124546 65124546 G T TIGD3 Missense_Mutation p.G423C 0.40 deleterious(0.02) possibly_damaging(0.512) TCGA-55-8506-01 11 65268107 65268107 A T MALAT1 RNA 0.19 TCGA-55-8506-01 11 65320986 65320986 G - LTBP3 Frame_Shift_Del p.L294Sfs*94 0.17 TCGA-55-8506-01 11 65380566 65380566 T C MAP3K11 Missense_Mutation p.Q221R 0.18 deleterious(0) probably_damaging(0.932) TCGA-55-8506-01 11 65387244 65387244 C T PCNXL3 Missense_Mutation p.R617W 0.16 deleterious(0) probably_damaging(0.973) TCGA-55-8506-01 11 65426244 65426245 AG - RELA Frame_Shift_Del p.S203Wfs*8 0.13 TCGA-55-8506-01 11 65482089 65482089 C A KAT5 Silent p.R272R 0.19 TCGA-55-8506-01 11 65620007 65620008 CT - SNX32 Frame_Shift_Del p.S300Tfs*76 0.13 TCGA-55-8506-01 11 65810809 65810809 G A GAL3ST3 Silent p.A155A 0.08 TCGA-55-8506-01 11 66262731 66262731 G T DPP3 Missense_Mutation p.G482C 0.24 deleterious(0) probably_damaging(0.992) TCGA-55-8506-01 11 66359230 66359230 G - CCDC87 Frame_Shift_Del p.K420Nfs*10 0.21 TCGA-55-8506-01 11 66392646 66392646 G T RBM14 Silent p.V433V 0.06 TCGA-55-8506-01 11 6651268 6651268 G T DCHS1 Missense_Mutation p.S1586Y 0.32 deleterious(0) possibly_damaging(0.547) TCGA-55-8506-01 11 66616775 66616775 C T PC Missense_Mutation p.G1072S 0.16 deleterious(0) probably_damaging(0.987) TCGA-55-8506-01 11 67560603 67560604 AA - FAM86C2P RNA 0.18 TCGA-55-8506-01 11 6789864 6789864 T C OR2AG2 Missense_Mutation p.S109G 0.09 tolerated(1) benign(0) TCGA-55-8506-01 11 70333054 70333054 C T SHANK2 Missense_Mutation p.G1116E 0.12 tolerated(0.71) benign(0.092) TCGA-55-8506-01 11 71277061 71277061 A G KRTAP5-10 Missense_Mutation p.N143S 0.20 unknown(0) TCGA-55-8506-01 11 71293309 71293309 A T KRTAP5-11 3'UTR 0.44 TCGA-55-8506-01 11 72535842 72535843 TG - ATG16L2 Frame_Shift_Del p.V320Gfs*18 0.14 TCGA-55-8506-01 11 73120643 73120643 C T FAM168A Missense_Mutation p.V162I 0.14 tolerated(0.08) benign(0.002) TCGA-55-8506-01 11 73997406 73997406 A G P4HA3 Missense_Mutation p.V267A 0.04 deleterious(0.03) benign(0.14) TCGA-55-8506-01 11 75113470 75113472 AGG - RPS3 In_Frame_Del p.G128del 0.28 TCGA-55-8506-01 11 75188802 75188802 G A GDPD5 5'UTR 0.20 TCGA-55-8506-01 11 75277634 75277634 C T SERPINH1 Silent p.L80L 0.11 TCGA-55-8506-01 11 75902797 75902797 G A WNT11 Missense_Mutation p.A234V 0.20 deleterious(0) probably_damaging(0.996) TCGA-55-8506-01 11 76169296 76169296 G T C11orf30 Silent p.R105R 0.22 TCGA-55-8506-01 11 76183703 76183703 G A C11orf30 Silent p.T309T 0.13 TCGA-55-8506-01 11 76239405 76239405 A G C11orf30 Missense_Mutation p.R697G 0.25 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-55-8506-01 11 7723269 7723269 T A OVCH2 Missense_Mutation p.T185S 0.27 tolerated(0.82) benign(0.013) TCGA-55-8506-01 11 77909055 77909055 C T USP35 Silent p.V249V 0.25 TCGA-55-8506-01 11 7847517 7847517 C A OR5P3 Translation_Start_Site p.M1? 0.28 deleterious(0) possibly_damaging(0.839) TCGA-55-8506-01 11 7981479 7981479 G T NLRP10 Silent p.T560T 0.12 TCGA-55-8506-01 11 811600 811600 A T RPLP2 Missense_Mutation p.I43F 0.25 deleterious(0) probably_damaging(0.966) TCGA-55-8506-01 11 8159832 8159832 G T RIC3 Silent p.T138T 0.16 TCGA-55-8506-01 11 82877539 82877540 TT - PCF11 Frame_Shift_Del p.F534Yfs*5 0.15 TCGA-55-8506-01 11 82880442 82880442 G C PCF11 Missense_Mutation p.G1022A 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-55-8506-01 11 83641488 83641488 C T DLG2 Missense_Mutation p.C460Y 0.25 tolerated(1) possibly_damaging(0.66) TCGA-55-8506-01 11 83676388 83676388 C A DLG2 Missense_Mutation p.G394C 0.17 deleterious(0) probably_damaging(1) TCGA-55-8506-01 11 84028144 84028144 G A DLG2 Intron 0.12 TCGA-55-8506-01 11 85374858 85374858 C T CREBZF Missense_Mutation p.M354I 0.49 tolerated(0.45) benign(0) TCGA-55-8506-01 11 85420535 85420535 G A SYTL2 Silent p.G951G 0.08 TCGA-55-8506-01 11 85445287 85445287 G T SYTL2 Missense_Mutation p.S361Y 0.24 tolerated(0.15) possibly_damaging(0.594) TCGA-55-8506-01 11 85584275 85584275 C A CCDC83 Silent p.A39A 0.29 TCGA-55-8506-01 11 86270865 86270865 C A ME3 Missense_Mutation p.G62W 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 11 88911152 88911152 T A TYR Missense_Mutation p.W11R 0.26 tolerated(0.26) benign(0.193) TCGA-55-8506-01 11 8948517 8948517 A C C11orf16 Missense_Mutation p.L177V 0.41 tolerated(0.07) possibly_damaging(0.828) TCGA-55-8506-01 11 9165709 9165709 G A DENND5A Missense_Mutation p.P1080L 0.48 deleterious(0) possibly_damaging(0.893) TCGA-55-8506-01 11 92715238 92715238 C A MTNR1B Silent p.P283P 0.21 TCGA-55-8506-01 11 93754640 93754640 G A HEPHL1 Missense_Mutation p.E36K 0.18 tolerated(0.59) probably_damaging(0.926) TCGA-55-8506-01 11 99932087 99932087 G C CNTN5 Missense_Mutation p.R375P 0.16 deleterious(0) probably_damaging(1) TCGA-55-8506-01 12 100551472 100551472 C A AC010203.1 5'Flank 0.27 TCGA-55-8506-01 12 100904558 100904558 G T NR1H4 Missense_Mutation p.V38F 0.32 deleterious(0) benign(0.183) TCGA-55-8506-01 12 101381337 101381337 G T ANO4 Missense_Mutation p.R173M 0.33 tolerated(0.23) possibly_damaging(0.847) TCGA-55-8506-01 12 10215689 10215689 C A CLEC9A Missense_Mutation p.Q119K 0.25 tolerated(0.12) benign(0.09) TCGA-55-8506-01 12 10218316 10218316 C G CLEC9A 3'UTR 0.10 TCGA-55-8506-01 12 103352411 103352411 G A ASCL1 Missense_Mutation p.R130H 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-55-8506-01 12 10339077 10339077 C T TMEM52B Missense_Mutation p.R46C 0.35 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 12 104396965 104396965 C T GLT8D2 Missense_Mutation p.A78T 0.13 tolerated(0.11) possibly_damaging(0.756) TCGA-55-8506-01 12 10466072 10466072 G T KLRD1 Missense_Mutation p.A127S 0.12 deleterious(0.05) possibly_damaging(0.606) TCGA-55-8506-01 12 108620802 108620802 C G WSCD2 Missense_Mutation p.C280W 0.29 deleterious(0) probably_damaging(0.995) TCGA-55-8506-01 12 108941751 108941751 C A SART3 Missense_Mutation p.W152C 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-55-8506-01 12 109877484 109877484 C T MYO1H Silent p.N765N 0.34 TCGA-55-8506-01 12 110252298 110252298 C T TRPV4 Missense_Mutation p.A102T 0.23 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 12 110370677 110370677 C A GIT2 3'UTR 0.17 TCGA-55-8506-01 12 111779638 111779638 C T CUX2 Missense_Mutation p.P1147L 0.29 deleterious(0) benign(0.216) TCGA-55-8506-01 12 111779639 111779639 G T CUX2 Silent p.P1147P 0.30 TCGA-55-8506-01 12 111954044 111954044 G A ATXN2 Missense_Mutation p.S590L 0.45 probably_damaging(0.996) TCGA-55-8506-01 12 113612894 113612894 G A DDX54 Missense_Mutation p.T274M 0.07 tolerated(0.09) probably_damaging(0.991) TCGA-55-8506-01 12 11420916 11420916 G T PRB3 Silent p.S89S 0.22 TCGA-55-8506-01 12 122277572 122277572 G T HPD 3'UTR 0.33 TCGA-55-8506-01 12 122691525 122691525 G A B3GNT4 Missense_Mutation p.V243M 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-55-8506-01 12 122862383 122862383 C A CLIP1 Missense_Mutation p.K70N 0.32 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 12 122966542 122966547 GTGGTA - ZCCHC8 In_Frame_Del p.Y274_H275del 0.31 TCGA-55-8506-01 12 124428010 124428010 T C CCDC92 Missense_Mutation p.N22S 0.31 tolerated(0.99) benign(0.234) TCGA-55-8506-01 12 125509758 125509758 G A BRI3BP Missense_Mutation p.E180K 0.21 deleterious(0.02) probably_damaging(0.941) TCGA-55-8506-01 12 130941116 130941116 G T RIMBP2 Missense_Mutation p.P78T 0.36 tolerated(0.35) benign(0.001) TCGA-55-8506-01 12 131285768 131285768 A G STX2 Missense_Mutation p.M202T 0.08 deleterious(0) benign(0.369) TCGA-55-8506-01 12 132466837 132466837 G A EP400 Silent p.P581P 0.31 TCGA-55-8506-01 12 132471096 132471096 C T EP400 Missense_Mutation p.P656L 0.15 unknown(0) TCGA-55-8506-01 12 132547013 132547013 A T EP400 Missense_Mutation p.T2701S 0.31 possibly_damaging(0.486) TCGA-55-8506-01 12 14849223 14849223 A T GUCY2C Missense_Mutation p.L54M 0.32 deleterious(0.01) probably_damaging(0.925) TCGA-55-8506-01 12 14996146 14996146 A T ART4 5'UTR 0.36 TCGA-55-8506-01 12 14996148 14996148 C A ART4 5'UTR 0.33 TCGA-55-8506-01 12 21331856 21331856 G T SLCO1B1 Missense_Mutation p.G210V 0.20 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 12 21377716 21377716 C G SLCO1B1 Missense_Mutation p.S603C 0.38 deleterious(0.03) probably_damaging(0.987) TCGA-55-8506-01 12 21422688 21422688 C A SLCO1A2 Nonsense_Mutation p.G603* 0.23 TCGA-55-8506-01 12 22028585 22028585 T C ABCC9 Intron 0.26 TCGA-55-8506-01 12 2224480 2224480 G T CACNA1C Missense_Mutation p.G47V 0.38 deleterious_low_confidence(0.01) benign(0.083) TCGA-55-8506-01 12 22609907 22609907 C A C2CD5 Nonsense_Mutation p.E908* 0.25 TCGA-55-8506-01 12 247854 247854 C A IQSEC3 Missense_Mutation p.A442E 0.33 deleterious_low_confidence(0.03) benign(0.099) TCGA-55-8506-01 12 25034329 25034329 T - BCAT1 Frame_Shift_Del p.K111Rfs*6 0.25 TCGA-55-8506-01 12 27849995 27849995 G T REP15 Missense_Mutation p.G167V 0.37 deleterious(0) probably_damaging(0.955) TCGA-55-8506-01 12 2786202 2786202 G A CACNA1C Intron 0.31 TCGA-55-8506-01 12 29650606 29650606 G A OVCH1 Missense_Mutation p.A5V 0.27 tolerated_low_confidence(0.45) unknown(0) TCGA-55-8506-01 12 29786207 29786207 A T TMTC1 Missense_Mutation p.L334Q 0.08 deleterious(0) probably_damaging(0.95) TCGA-55-8506-01 12 29904644 29904644 C A TMTC1 Missense_Mutation p.S298I 0.12 tolerated(0.44) possibly_damaging(0.467) TCGA-55-8506-01 12 32480435 32480435 A T BICD1 Missense_Mutation p.E349V 0.27 deleterious(0) probably_damaging(1) TCGA-55-8506-01 12 32481177 32481177 G T BICD1 Missense_Mutation p.K596N 0.35 tolerated(0.23) possibly_damaging(0.665) TCGA-55-8506-01 12 335607 335607 C A SLC6A13 Missense_Mutation p.G337C 0.25 deleterious(0) probably_damaging(0.995) TCGA-55-8506-01 12 39118672 39118673 - T CPNE8 Frame_Shift_Ins p.K277Efs*5 0.28 TCGA-55-8506-01 12 41967124 41967124 G T PDZRN4 Missense_Mutation p.R848L 0.27 deleterious(0) benign(0.414) TCGA-55-8506-01 12 48189044 48189045 - G HDAC7 Frame_Shift_Ins p.S403Qfs*33 0.15 TCGA-55-8506-01 12 48240119 48240119 T A VDR Silent p.P391P 0.33 TCGA-55-8506-01 12 48251338 48251338 G A VDR Silent p.D187D 0.09 TCGA-55-8506-01 12 48386708 48386708 G A COL2A1 Missense_Mutation p.R326C 0.23 unknown(0) TCGA-55-8506-01 12 49916602 49916602 G A SPATS2 Silent p.E359E 0.19 TCGA-55-8506-01 12 49943404 49943404 A G KCNH3 Missense_Mutation p.N550S 0.22 tolerated(0.17) benign(0.018) TCGA-55-8506-01 12 49993443 49993445 CTT - FAM186B In_Frame_Del p.K660del 0.25 TCGA-55-8506-01 12 50475361 50475361 G A ASIC1 Missense_Mutation p.G552R 0.28 deleterious(0) possibly_damaging(0.866) TCGA-55-8506-01 12 51090959 51090959 G T DIP2B Splice_Site p.X683_splice 0.29 TCGA-55-8506-01 12 5154517 5154517 A T KCNA5 Missense_Mutation p.I402F 0.21 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 12 52714928 52714928 G A KRT83 Silent p.C64C 0.35 TCGA-55-8506-01 12 55356389 55356389 G C TESPA1 Missense_Mutation p.F431L 0.26 tolerated_low_confidence(0.5) benign(0.006) TCGA-55-8506-01 12 56030945 56030945 C T OR10P1 Silent p.P90P 0.34 TCGA-55-8506-01 12 56555330 56555330 G T MYL6 3'UTR 0.12 TCGA-55-8506-01 12 57591140 57591140 C T LRP1 Silent p.D3045D 0.11 TCGA-55-8506-01 12 57599187 57599187 C T LRP1 Missense_Mutation p.R3797C 0.14 benign(0.394) TCGA-55-8506-01 12 57962811 57962811 A C KIF5A Silent p.S260S 0.10 TCGA-55-8506-01 12 58128119 58128120 CA T AGAP2 Frame_Shift_Del p.A463Hfs*13 0.23 TCGA-55-8506-01 12 63060986 63060986 G A PPM1H Missense_Mutation p.P457S 0.24 tolerated(1) benign(0.013) TCGA-55-8506-01 12 64491126 64491126 A T SRGAP1 Missense_Mutation p.E595V 0.30 deleterious(0) possibly_damaging(0.666) TCGA-55-8506-01 12 64509625 64509625 G T SRGAP1 Nonsense_Mutation p.E726* 0.48 TCGA-55-8506-01 12 6494499 6494499 C T LTBR Silent p.C142C 0.34 TCGA-55-8506-01 12 6756075 6756075 C G ACRBP Silent p.L49L 0.27 TCGA-55-8506-01 12 68646283 68646283 C - IL22 Splice_Site p.X132_splice 0.25 TCGA-55-8506-01 12 70946630 70946630 T A PTPRB Missense_Mutation p.S1772C 0.18 deleterious(0.02) possibly_damaging(0.882) TCGA-55-8506-01 12 71286551 71286551 C A PTPRR Missense_Mutation p.A89S 0.28 tolerated_low_confidence(0.38) benign(0.027) TCGA-55-8506-01 12 7476111 7476111 C A ACSM4 Silent p.L421L 0.34 TCGA-55-8506-01 12 7639979 7639979 G C CD163 Missense_Mutation p.Q676E 0.21 deleterious(0.03) benign(0.044) TCGA-55-8506-01 12 78400695 78400695 A T NAV3 Missense_Mutation p.K459N 0.09 tolerated(0.08) benign(0.084) TCGA-55-8506-01 12 7864237 7864237 G T DPPA3 Missense_Mutation p.R24L 0.35 tolerated(0.08) benign(0.005) TCGA-55-8506-01 12 7864238 7864238 G T DPPA3 Silent p.R24R 0.32 TCGA-55-8506-01 12 80746082 80746082 C T OTOGL Missense_Mutation p.P1749L 0.27 deleterious(0.01) probably_damaging(1) TCGA-55-8506-01 12 81283065 81283066 - T LIN7A Frame_Shift_Ins p.V56Sfs*5 0.14 TCGA-55-8506-01 12 8245515 8245515 G T NECAP1 Missense_Mutation p.R180S 0.24 tolerated(0.72) benign(0) TCGA-55-8506-01 12 8906616 8906616 C T RIMKLB Silent p.V208V 0.28 TCGA-55-8506-01 12 94580196 94580196 G T PLXNC1 Silent p.S462S 0.35 TCGA-55-8506-01 12 94618092 94618092 G C PLXNC1 Splice_Site p.X597_splice 0.29 TCGA-55-8506-01 12 97051859 97051859 C A C12orf55 Missense_Mutation p.A1767D 0.22 deleterious(0) probably_damaging(0.982) TCGA-55-8506-01 12 9907144 9907144 G T CD69 Intron 0.27 TCGA-55-8506-01 13 101277781 101277781 G A TMTC4 Intron 0.25 TCGA-55-8506-01 13 102235704 102235704 C A ITGBL1 Nonsense_Mutation p.S289* 0.17 TCGA-55-8506-01 13 102367914 102367914 G T ITGBL1 Silent p.G465G 0.37 TCGA-55-8506-01 13 109793318 109793318 C T MYO16 Silent p.S1564S 0.67 TCGA-55-8506-01 13 111092173 111092173 G T COL4A2 Missense_Mutation p.G317V 0.12 probably_damaging(0.999) TCGA-55-8506-01 13 111130368 111130368 G A COL4A2 Missense_Mutation p.G815E 0.37 possibly_damaging(0.788) TCGA-55-8506-01 13 111287011 111287011 C T CARKD Intron 0.12 TCGA-55-8506-01 13 111368348 111368348 G C ING1 Silent p.P186P 0.38 TCGA-55-8506-01 13 113771897 113771897 G T F7 Silent p.L264L 0.09 TCGA-55-8506-01 13 113964175 113964175 A G LAMP1 Missense_Mutation p.K134R 0.07 tolerated(0.39) benign(0.008) TCGA-55-8506-01 13 19753492 19753492 G T TUBA3C Missense_Mutation p.P72H 0.11 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-55-8506-01 13 21006393 21006393 G - CRYL1 Frame_Shift_Del p.H161Tfs*15 0.30 TCGA-55-8506-01 13 25262494 25262494 G A ATP12A Missense_Mutation p.R89Q 0.16 tolerated(0.12) benign(0.004) TCGA-55-8506-01 13 25457509 25457509 T A CENPJ Splice_Site p.X1275_splice 0.19 TCGA-55-8506-01 13 25743822 25743822 C A AMER2 Missense_Mutation p.V646F 0.32 deleterious(0) probably_damaging(0.998) TCGA-55-8506-01 13 26788287 26788287 C G RNF6 Missense_Mutation p.V578L 0.17 tolerated(0.14) benign(0.1) TCGA-55-8506-01 13 27333176 27333176 G T GPR12 Nonsense_Mutation p.C263* 0.22 TCGA-55-8506-01 13 28537263 28537263 C T CDX2 Missense_Mutation p.V311I 0.08 tolerated_low_confidence(0.06) unknown(0) TCGA-55-8506-01 13 28623839 28623839 C A FLT3 Missense_Mutation p.C272F 0.13 deleterious(0) probably_damaging(1) TCGA-55-8506-01 13 29599124 29599124 G T MTUS2 Missense_Mutation p.D107Y 0.13 deleterious(0) probably_damaging(0.912) TCGA-55-8506-01 13 32367143 32367144 - A RXFP2 Frame_Shift_Ins p.N570Kfs*10 0.11 TCGA-55-8506-01 13 33344515 33344515 C G PDS5B Missense_Mutation p.P1294R 0.14 deleterious_low_confidence(0) benign(0.426) TCGA-55-8506-01 13 37619400 37619400 C A SUPT20H Missense_Mutation p.R92S 0.20 tolerated(0.05) benign(0.221) TCGA-55-8506-01 13 38160960 38160960 G C POSTN Missense_Mutation p.Q238E 0.12 tolerated(0.1) benign(0.058) TCGA-55-8506-01 13 38172935 38172935 T C POSTN 5'UTR 0.52 TCGA-55-8506-01 13 41341054 41341054 T A MRPS31 Missense_Mutation p.S90C 0.43 deleterious(0.02) possibly_damaging(0.789) TCGA-55-8506-01 13 41507915 41507915 G T ELF1 Silent p.A502A 0.42 TCGA-55-8506-01 13 41642791 41642791 A - WBP4 Frame_Shift_Del p.D122Ifs*8 0.13 TCGA-55-8506-01 13 42769036 42769036 G C DGKH Missense_Mutation p.R684P 0.31 tolerated(0.2) benign(0.002) TCGA-55-8506-01 13 43872484 43872484 G T ENOX1 Missense_Mutation p.Q482K 0.48 tolerated(0.34) probably_damaging(0.965) TCGA-55-8506-01 13 50050716 50050716 G T SETDB2 Missense_Mutation p.G149V 0.16 deleterious(0.03) benign(0.382) TCGA-55-8506-01 13 50051129 50051129 A T SETDB2 Missense_Mutation p.S287C 0.20 deleterious(0) possibly_damaging(0.755) TCGA-55-8506-01 13 51825865 51825865 G A FAM124A Missense_Mutation p.R157H 0.27 tolerated(0.06) probably_damaging(0.955) TCGA-55-8506-01 13 53420691 53420691 G T PCDH8 Silent p.T627T 0.20 TCGA-55-8506-01 13 53421200 53421200 C T PCDH8 Missense_Mutation p.E458K 0.15 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 13 53422297 53422297 C T PCDH8 Missense_Mutation p.R92H 0.21 deleterious(0) probably_damaging(0.941) TCGA-55-8506-01 13 61986209 61986209 C T PCDH20 Missense_Mutation p.A675T 0.24 tolerated(1) probably_damaging(0.936) TCGA-55-8506-01 13 67802665 67802665 C T PCDH9 5'UTR 0.46 TCGA-55-8506-01 13 70314688 70314688 C A KLHL1 Missense_Mutation p.G547V 0.48 deleterious(0) probably_damaging(1) TCGA-55-8506-01 13 96599352 96599352 C T UGGT2 Missense_Mutation p.R539Q 0.14 deleterious(0.04) benign(0.16) TCGA-55-8506-01 13 97639847 97639847 G C OXGR1 Missense_Mutation p.S56C 0.70 tolerated(0.18) benign(0.118) TCGA-55-8506-01 14 101455530 101455530 G T SNORD114-28 RNA 0.30 TCGA-55-8506-01 14 101510612 101510612 C A MIR1185-2 RNA 0.18 TCGA-55-8506-01 14 104145828 104145828 C T KLC1 Silent p.Y532Y 0.05 TCGA-55-8506-01 14 104643535 104643535 C T KIF26A Silent p.S1470S 0.39 TCGA-55-8506-01 14 105236629 105236629 C A AKT1 3'UTR 0.58 TCGA-55-8506-01 14 105353560 105353560 C T CEP170B Missense_Mutation p.P995L 0.43 tolerated(0.22) benign(0.005) TCGA-55-8506-01 14 105353664 105353664 G A CEP170B Missense_Mutation p.A1030T 0.17 tolerated(0.14) benign(0.287) TCGA-55-8506-01 14 105411420 105411420 C A AHNAK2 Missense_Mutation p.E3456D 0.38 benign(0.001) TCGA-55-8506-01 14 105518050 105518050 C T GPR132 Missense_Mutation p.V142M 0.16 tolerated(0.36) benign(0.148) TCGA-55-8506-01 14 105521800 105521800 C A GPR132 5'UTR 0.34 TCGA-55-8506-01 14 106237683 106237683 C A IGHG3 Missense_Mutation p.G21C 0.61 deleterious(0) possibly_damaging(0.837) TCGA-55-8506-01 14 106321707 106321707 T C IGHM Missense_Mutation p.Y176C 0.36 deleterious(0) probably_damaging(0.932) TCGA-55-8506-01 14 106494553 106494553 G A IGHV2-5 Silent p.L9L 0.30 TCGA-55-8506-01 14 106621989 106621989 G T IGHV3-16 Silent p.R86R 0.45 TCGA-55-8506-01 14 107078537 107078537 G C IGHV1-58 Missense_Mutation p.R63G 0.17 benign(0) TCGA-55-8506-01 14 20216172 20216172 G T OR4Q3 Missense_Mutation p.V196L 0.18 tolerated(1) benign(0.218) TCGA-55-8506-01 14 20528383 20528383 C A OR4L1 Nonsense_Mutation p.Y60* 0.32 TCGA-55-8506-01 14 20586342 20586342 C A OR4K17 Missense_Mutation p.H259Q 0.24 tolerated(0.12) benign(0.124) TCGA-55-8506-01 14 20849099 20849099 C T TEP1 Missense_Mutation p.A1585T 0.08 tolerated(0.16) benign(0.064) TCGA-55-8506-01 14 20979089 20979089 C T RNASE10 Silent p.N153N 0.23 TCGA-55-8506-01 14 21553011 21553013 CTC - ARHGEF40 In_Frame_Del p.L1299del 0.11 TCGA-55-8506-01 14 21560060 21560060 C A ZNF219 Missense_Mutation p.A466S 0.21 tolerated(0.65) possibly_damaging(0.753) TCGA-55-8506-01 14 21897350 21897350 C A CHD8 Missense_Mutation p.A330S 0.24 tolerated_low_confidence(0.12) benign(0.122) TCGA-55-8506-01 14 21899363 21899363 C A CHD8 Missense_Mutation p.S147I 0.39 deleterious_low_confidence(0.04) benign(0.008) TCGA-55-8506-01 14 23596404 23596404 C T SLC7A8 Silent p.A530A 0.27 TCGA-55-8506-01 14 23944786 23944786 C T NGDN Missense_Mutation p.P101L 0.27 deleterious(0) probably_damaging(1) TCGA-55-8506-01 14 24040607 24040607 C T JPH4 Missense_Mutation p.G445R 0.41 tolerated(0.12) benign(0.132) TCGA-55-8506-01 14 24728975 24728975 G T TGM1 Silent p.R307R 0.23 TCGA-55-8506-01 14 24735664 24735664 C T RABGGTA Silent p.R509R 0.27 TCGA-55-8506-01 14 29237187 29237187 C A FOXG1 Silent p.S234S 0.27 TCGA-55-8506-01 14 31856515 31856515 A - HEATR5A Frame_Shift_Del p.S41Lfs*4 0.10 TCGA-55-8506-01 14 33201884 33201884 T C AKAP6 Intron 0.11 TCGA-55-8506-01 14 34145460 34145460 G T NPAS3 Missense_Mutation p.G201V 0.33 deleterious(0.01) probably_damaging(0.988) TCGA-55-8506-01 14 35264947 35264947 T C BAZ1A Missense_Mutation p.K385E 0.14 deleterious(0.01) benign(0.292) TCGA-55-8506-01 14 36004969 36004969 C - INSM2 Frame_Shift_Del p.A504Gfs*37 0.30 TCGA-55-8506-01 14 47504368 47504368 C A MDGA2 Missense_Mutation p.M555I 0.18 deleterious(0.03) probably_damaging(0.981) TCGA-55-8506-01 14 47504416 47504416 T G MDGA2 Missense_Mutation p.K539N 0.17 deleterious(0.01) probably_damaging(0.928) TCGA-55-8506-01 14 50550573 50550573 G A C14orf183 Silent p.G257G 0.15 TCGA-55-8506-01 14 50583090 50583090 C A VCPKMT Missense_Mutation p.D61Y 0.64 deleterious(0.04) benign(0.351) TCGA-55-8506-01 14 51489588 51489588 C A TRIM9 Missense_Mutation p.A336S 0.17 tolerated(0.54) benign(0.001) TCGA-55-8506-01 14 52520985 52520985 G T NID2 Silent p.S274S 0.42 TCGA-55-8506-01 14 52782049 52782049 C A PTGER2 Missense_Mutation p.D261E 0.37 tolerated(0.41) possibly_damaging(0.669) TCGA-55-8506-01 14 59113413 59113413 T A DACT1 Missense_Mutation p.L691Q 0.22 deleterious(0.03) probably_damaging(1) TCGA-55-8506-01 14 59113434 59113434 G A DACT1 Missense_Mutation p.R698H 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-55-8506-01 14 62547585 62547585 G T SYT16 Missense_Mutation p.G343W 0.29 tolerated(0.09) possibly_damaging(0.6) TCGA-55-8506-01 14 63174948 63174948 C T KCNH5 Missense_Mutation p.G749R 0.22 tolerated(0.28) benign(0.167) TCGA-55-8506-01 14 63447966 63447966 G T KCNH5 Nonsense_Mutation p.S189* 0.24 TCGA-55-8506-01 14 64484401 64484401 A T SYNE2 Missense_Mutation p.D1659V 0.06 possibly_damaging(0.871) TCGA-55-8506-01 14 64988384 64988384 G T ZBTB1 Missense_Mutation p.M54I 0.42 tolerated(1) benign(0.101) TCGA-55-8506-01 14 65009161 65009161 G T HSPA2 Missense_Mutation p.D532Y 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-8506-01 14 65019538 65019538 C T PPP1R36 Silent p.A47A 0.20 TCGA-55-8506-01 14 65208208 65208208 C T PLEKHG3 Missense_Mutation p.T602I 0.27 tolerated(0.15) benign(0.25) TCGA-55-8506-01 14 65242017 65242017 C A SPTB Missense_Mutation p.E1556D 0.28 tolerated(0.32) benign(0.008) TCGA-55-8506-01 14 67859554 67859554 A G PLEK2 Missense_Mutation p.V165A 0.50 deleterious(0.02) probably_damaging(1) TCGA-55-8506-01 14 69341514 69341514 G A ACTN1 3'UTR 0.43 TCGA-55-8506-01 14 70991123 70991123 C - ADAM20 Frame_Shift_Del p.V168Sfs*21 0.10 TCGA-55-8506-01 14 71051554 71051555 - G MED6 Frame_Shift_Ins p.E240* 0.11 TCGA-55-8506-01 14 71199499 71199499 G A MAP3K9 Missense_Mutation p.P877S 0.17 tolerated(0.12) probably_damaging(0.999) TCGA-55-8506-01 14 74995224 74995224 G A LTBP2 Missense_Mutation p.T777M 0.10 tolerated(0.2) possibly_damaging(0.835) TCGA-55-8506-01 14 75329870 75329870 A G PROX2 Missense_Mutation p.L223P 0.44 deleterious(0.02) probably_damaging(0.986) TCGA-55-8506-01 14 76238130 76238130 G A TTLL5 Missense_Mutation p.R690H 0.11 deleterious(0) probably_damaging(0.995) TCGA-55-8506-01 14 77255732 77255732 C A ANGEL1 Splice_Site p.X618_splice 0.09 TCGA-55-8506-01 14 80669291 80669291 T A DIO2 Missense_Mutation p.Q224L 0.40 tolerated(1) benign(0.022) TCGA-55-8506-01 14 81380710 81380710 G A CEP128 Nonsense_Mutation p.R64* 0.05 TCGA-55-8506-01 14 81970636 81970636 C A SEL1L Missense_Mutation p.A175S 0.24 tolerated(0.71) benign(0.034) TCGA-55-8506-01 14 86088908 86088908 C A FLRT2 Silent p.V350V 0.26 TCGA-55-8506-01 14 88945516 88945516 C T PTPN21 Silent p.G753G 0.47 TCGA-55-8506-01 14 89061356 89061356 G T ZC3H14 Intron 0.31 TCGA-55-8506-01 14 89161767 89161767 T A EML5 Silent p.I792I 0.17 TCGA-55-8506-01 14 90744788 90744788 G A NRDE2 Silent p.A1129A 0.07 TCGA-55-8506-01 14 91007790 91007790 C T TTC7B Silent p.T818T 0.10 TCGA-55-8506-01 14 91196486 91196486 C A TTC7B Missense_Mutation p.D211Y 0.25 deleterious(0) benign(0.396) TCGA-55-8506-01 14 93673413 93673413 C A C14orf142 5'UTR 0.26 TCGA-55-8506-01 14 94404126 94404126 G A ASB2 Silent p.Y563Y 0.20 TCGA-55-8506-01 14 94964722 94964722 G C SERPINA12 Missense_Mutation p.L5V 0.46 deleterious(0.05) possibly_damaging(0.583) TCGA-55-8506-01 14 96782972 96782972 C T ATG2B Missense_Mutation p.E1087K 0.12 deleterious(0) probably_damaging(0.971) TCGA-55-8506-01 15 100802629 100802629 C A ADAMTS17 Missense_Mutation p.M267I 0.24 deleterious(0.01) benign(0.114) TCGA-55-8506-01 15 21071362 21071362 C A POTEB2 Missense_Mutation p.W83C 0.26 tolerated(0.07) probably_damaging(0.99) TCGA-55-8506-01 15 25312992 25312992 G T SNORD116-7 RNA 0.31 TCGA-55-8506-01 15 28389237 28389237 T A HERC2 Missense_Mutation p.Q3762L 0.41 possibly_damaging(0.715) TCGA-55-8506-01 15 28478471 28478471 C T HERC2 Missense_Mutation p.G1499D 0.50 benign(0.388) TCGA-55-8506-01 15 31664264 31664264 G T KLF13 Missense_Mutation p.R210L 0.53 deleterious(0) possibly_damaging(0.569) TCGA-55-8506-01 15 34080453 34080453 C T RYR3 Silent p.P3208P 0.45 TCGA-55-8506-01 15 34528220 34528220 G A SLC12A6 Missense_Mutation p.R1075C 0.10 deleterious(0.01) possibly_damaging(0.656) TCGA-55-8506-01 15 41767986 41767986 A C RTF1 Missense_Mutation p.N484T 0.19 tolerated(0.27) benign(0.053) TCGA-55-8506-01 15 42021442 42021442 A - MGA Frame_Shift_Del p.E1249Rfs*42 0.32 TCGA-55-8506-01 15 42113112 42113112 G T MAPKBP1 Missense_Mutation p.G861V 0.37 deleterious(0.01) possibly_damaging(0.885) TCGA-55-8506-01 15 48426734 48426734 C T SLC24A5 Missense_Mutation p.T163M 0.16 tolerated(0.37) benign(0.02) TCGA-55-8506-01 15 50904913 50904913 C T TRPM7 Nonsense_Mutation p.W628* 0.31 TCGA-55-8506-01 15 51697025 51697025 T - GLDN 3'UTR 0.19 TCGA-55-8506-01 15 58458998 58458998 G T AQP9 Missense_Mutation p.G80C 0.19 deleterious(0) probably_damaging(1) TCGA-55-8506-01 15 58834827 58834827 C T LIPC Missense_Mutation p.T184M 0.31 deleterious(0.04) possibly_damaging(0.767) TCGA-55-8506-01 15 59494582 59494582 C G MYO1E Silent p.P547P 0.32 TCGA-55-8506-01 15 59501033 59501033 G C MYO1E Missense_Mutation p.I459M 0.26 deleterious(0.04) possibly_damaging(0.721) TCGA-55-8506-01 15 60742005 60742005 C G NARG2 Missense_Mutation p.E387D 0.28 tolerated(0.35) probably_damaging(0.996) TCGA-55-8506-01 15 65678341 65678341 G C IGDCC4 Missense_Mutation p.S1003C 0.43 deleterious(0.04) possibly_damaging(0.572) TCGA-55-8506-01 15 65946270 65946270 G C SLC24A1 Missense_Mutation p.M1051I 0.15 possibly_damaging(0.738) TCGA-55-8506-01 15 68612718 68612718 C A ITGA11 Missense_Mutation p.Q807H 0.44 tolerated(0.13) possibly_damaging(0.811) TCGA-55-8506-01 15 72958693 72958693 G T GOLGA6B 3'UTR 0.52 TCGA-55-8506-01 15 73617764 73617764 T A HCN4 Missense_Mutation p.M538L 0.26 deleterious(0.01) unknown(0) TCGA-55-8506-01 15 74284505 74284505 C A STOML1 Missense_Mutation p.Q20H 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-55-8506-01 15 74468372 74468372 C A ISLR Missense_Mutation p.S391R 0.31 deleterious(0.01) possibly_damaging(0.708) TCGA-55-8506-01 15 74659771 74659771 G T CYP11A1 Silent p.P52P 0.21 TCGA-55-8506-01 15 75308946 75308946 C T SCAMP5 Missense_Mutation p.T50M 0.13 deleterious(0.02) probably_damaging(1) TCGA-55-8506-01 15 75631427 75631427 C A COMMD4 Missense_Mutation p.Q95K 0.31 deleterious(0) probably_damaging(0.997) TCGA-55-8506-01 15 75979867 75979867 G A CSPG4 Missense_Mutation p.A1180V 0.23 tolerated(0.15) benign(0.131) TCGA-55-8506-01 15 75982102 75982102 C A CSPG4 Missense_Mutation p.S435I 0.08 deleterious(0) possibly_damaging(0.677) TCGA-55-8506-01 15 77310589 77310589 G C PSTPIP1 Missense_Mutation p.R46T 0.33 deleterious(0) probably_damaging(1) TCGA-55-8506-01 15 78635881 78635881 C T CRABP1 Missense_Mutation p.T97M 0.28 tolerated(0.08) possibly_damaging(0.453) TCGA-55-8506-01 15 83240228 83240228 G C CPEB1 Missense_Mutation p.A82G 0.33 tolerated_low_confidence(0.34) benign(0.005) TCGA-55-8506-01 15 83447540 83447540 C A FSD2 Missense_Mutation p.M363I 0.45 tolerated(0.08) benign(0.18) TCGA-55-8506-01 15 85411723 85411723 G A ALPK3 3'UTR 0.26 TCGA-55-8506-01 15 86312336 86312336 C T KLHL25 Missense_Mutation p.V236M 0.22 deleterious(0) possibly_damaging(0.755) TCGA-55-8506-01 15 86814905 86814905 G T AGBL1 Missense_Mutation p.W635C 0.27 deleterious(0) probably_damaging(1) TCGA-55-8506-01 15 88420315 88420315 G T NTRK3 Silent p.R791R 0.20 TCGA-55-8506-01 15 89056257 89056257 C T DET1 Silent p.E537E 0.29 TCGA-55-8506-01 15 89383359 89383359 G A ACAN Missense_Mutation p.A191T 0.18 deleterious(0) unknown(0) TCGA-55-8506-01 15 90162953 90162953 C T TICRR Nonsense_Mutation p.R1012* 0.20 TCGA-55-8506-01 15 91491409 91491409 C T UNC45A Missense_Mutation p.R545C 0.13 deleterious(0) probably_damaging(0.95) TCGA-55-8506-01 15 97326889 97326890 - C SPATA8 Frame_Shift_Ins p.A4Gfs*27 0.15 TCGA-55-8506-01 15 98509139 98509139 C G ARRDC4 Missense_Mutation p.S130W 0.26 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 16 11114171 11114171 G A CLEC16A Silent p.T475T 0.36 TCGA-55-8506-01 16 12798485 12798485 G A CPPED1 Silent p.H237H 0.16 TCGA-55-8506-01 16 1306532 1306532 T C TPSD1 Missense_Mutation p.L33P 0.34 tolerated(0.28) benign(0.019) TCGA-55-8506-01 16 1370540 1370540 G T UBE2I Intron 0.25 TCGA-55-8506-01 16 1498742 1498742 A C CLCN7 Missense_Mutation p.L608R 0.45 deleterious(0) possibly_damaging(0.894) TCGA-55-8506-01 16 14989862 14989862 G T NOMO1 3'UTR 0.06 TCGA-55-8506-01 16 15222240 15222240 G A RP11-1186N24.5 RNA 0.19 TCGA-55-8506-01 16 17232259 17232259 C A XYLT1 Missense_Mutation p.G573C 0.57 deleterious(0) probably_damaging(1) TCGA-55-8506-01 16 19477554 19477554 A T TMC5 Missense_Mutation p.S546C 0.47 deleterious(0) possibly_damaging(0.795) TCGA-55-8506-01 16 1996683 1996683 C T RPL3L Silent p.L298L 0.13 TCGA-55-8506-01 16 20043968 20043968 G T GPR139 Missense_Mutation p.L51I 0.54 deleterious(0) probably_damaging(0.994) TCGA-55-8506-01 16 2025882 2025882 C T TBL3 Missense_Mutation p.S354F 0.13 deleterious(0) possibly_damaging(0.786) TCGA-55-8506-01 16 20996912 20996912 C A DNAH3 Missense_Mutation p.Q2384H 0.21 tolerated(0.29) benign(0.002) TCGA-55-8506-01 16 21045312 21045312 G T DNAH3 Silent p.L1727L 0.15 TCGA-55-8506-01 16 2155885 2155885 A G PKD1 Missense_Mutation p.L2615P 0.11 probably_damaging(0.999) TCGA-55-8506-01 16 22587948 22587948 G T RP11-368J21.3 RNA 0.22 TCGA-55-8506-01 16 23366787 23366787 C T SCNN1B Silent p.F251F 0.25 TCGA-55-8506-01 16 23635337 23635337 C T PALB2 Missense_Mutation p.E943K 0.15 deleterious(0) probably_damaging(1) TCGA-55-8506-01 16 23652886 23652888 ACA - DCTN5 In_Frame_Del p.N9del 0.20 TCGA-55-8506-01 16 23711986 23711986 G - ERN2 Frame_Shift_Del p.L515Wfs*48 0.16 TCGA-55-8506-01 16 24166072 24166072 T A PRKCB Missense_Mutation p.V378E 0.48 deleterious(0) probably_damaging(0.956) TCGA-55-8506-01 16 24231561 24231561 G T PRKCB 3'UTR 0.44 TCGA-55-8506-01 16 24931274 24931274 T C ARHGAP17 3'UTR 0.42 TCGA-55-8506-01 16 2578516 2578516 G A AMDHD2 Missense_Mutation p.G309E 0.09 deleterious(0.01) probably_damaging(0.99) TCGA-55-8506-01 16 27460310 27460310 C A IL21R Silent p.P441P 0.47 TCGA-55-8506-01 16 27689186 27689186 C T KIAA0556 Missense_Mutation p.P226L 0.08 tolerated(0.1) benign(0.029) TCGA-55-8506-01 16 2815876 2815876 A G SRRM2 Missense_Mutation p.R1783G 0.41 unknown(0) TCGA-55-8506-01 16 28878163 28878163 G T SH2B1 Nonsense_Mutation p.E250* 0.47 TCGA-55-8506-01 16 28898956 28898956 G A ATP2A1 Missense_Mutation p.D281N 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-55-8506-01 16 29896959 29896959 C A SEZ6L2 Missense_Mutation p.E440D 0.45 tolerated(0.1) benign(0.302) TCGA-55-8506-01 16 29937168 29937168 C T KCTD13 Missense_Mutation p.D63N 0.21 tolerated(0.09) possibly_damaging(0.734) TCGA-55-8506-01 16 30409299 30409299 G T ZNF48 Missense_Mutation p.R243L 0.49 tolerated(0.08) benign(0.298) TCGA-55-8506-01 16 3070412 3070412 C A TNFRSF12A Nonsense_Mutation p.S5* 0.14 TCGA-55-8506-01 16 3071845 3071845 G A TNFRSF12A 3'UTR 0.08 TCGA-55-8506-01 16 30748387 30748387 C T SRCAP Silent p.A2342A 0.31 TCGA-55-8506-01 16 31004142 31004142 C A STX1B Nonstop_Mutation p.*289Yext*116 0.16 TCGA-55-8506-01 16 31151663 31151664 - G PRSS36 Frame_Shift_Ins p.G748Wfs*16 0.18 TCGA-55-8506-01 16 31332665 31332665 G T ITGAM Missense_Mutation p.G605V 0.27 deleterious(0) probably_damaging(1) TCGA-55-8506-01 16 31435893 31435893 T C ITGAD Missense_Mutation p.Y1123H 0.31 deleterious(0) probably_damaging(0.99) TCGA-55-8506-01 16 3543978 3543978 G T C16orf90 Missense_Mutation p.S137Y 0.41 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-55-8506-01 16 3740936 3740936 G A TRAP1 Nonsense_Mutation p.R47* 0.20 TCGA-55-8506-01 16 4242173 4242173 T - SRL Frame_Shift_Del p.N468Ifs*26 0.09 TCGA-55-8506-01 16 424347 424347 C A TMEM8A Missense_Mutation p.Q543H 0.26 tolerated(0.57) probably_damaging(0.99) TCGA-55-8506-01 16 4292063 4292063 C A SRL Missense_Mutation p.R2S 0.36 deleterious_low_confidence(0.02) unknown(0) TCGA-55-8506-01 16 4385070 4385070 C T GLIS2 Missense_Mutation p.L178F 0.21 tolerated(0.17) benign(0.076) TCGA-55-8506-01 16 4455510 4455510 C A CORO7 Silent p.L182L 0.09 TCGA-55-8506-01 16 4516201 4516202 GA - NMRAL1 Frame_Shift_Del p.S161Pfs*21 0.20 TCGA-55-8506-01 16 50349435 50349435 G A BRD7 3'Flank 0.16 TCGA-55-8506-01 16 50745496 50745496 G C NOD2 Silent p.L558L 0.37 TCGA-55-8506-01 16 5075585 5075585 C T NAGPA Missense_Mutation p.R481H 0.08 benign(0.001) TCGA-55-8506-01 16 5077317 5077317 G T NAGPA Missense_Mutation p.P413H 0.24 possibly_damaging(0.614) TCGA-55-8506-01 16 52480024 52480024 G A TOX3 Missense_Mutation p.A263V 0.19 deleterious(0) probably_damaging(0.996) TCGA-55-8506-01 16 55867055 55867055 C T CES1 5'UTR 0.45 TCGA-55-8506-01 16 56396849 56396849 C T AMFR Missense_Mutation p.R635Q 0.18 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-55-8506-01 16 57005247 57005249 CAA - CETP In_Frame_Del p.N205del 0.18 TCGA-55-8506-01 16 58593828 58593828 C A CNOT1 Intron 0.28 TCGA-55-8506-01 16 602998 602998 C T CAPN15 Missense_Mutation p.R1014C 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 16 698150 698150 G A FAM195A Nonsense_Mutation p.W148* 0.10 TCGA-55-8506-01 16 71318242 71318242 C A CMTR2 Nonsense_Mutation p.G528* 0.58 TCGA-55-8506-01 16 72821648 72821648 G A ZFHX3 Silent p.G3509G 0.21 TCGA-55-8506-01 16 78005819 78005819 C A VAT1L Missense_Mutation p.P384T 0.40 deleterious(0) probably_damaging(0.989) TCGA-55-8506-01 16 78005820 78005820 C A VAT1L Missense_Mutation p.P384Q 0.40 deleterious(0) probably_damaging(0.989) TCGA-55-8506-01 16 79633527 79633527 G A MAF Silent p.Y91Y 0.46 TCGA-55-8506-01 16 81181855 81181855 G A PKD1L2 RNA 0.22 TCGA-55-8506-01 16 83065758 83065758 C A CDH13 Missense_Mutation p.P148T 0.47 tolerated(0.44) benign(0.076) TCGA-55-8506-01 16 84623742 84623742 G A COTL1 Missense_Mutation p.T96M 0.24 deleterious(0) possibly_damaging(0.812) TCGA-55-8506-01 16 86601093 86601093 G T FOXC2 Missense_Mutation p.G51V 0.34 tolerated(0.07) possibly_damaging(0.593) TCGA-55-8506-01 16 86612677 86612677 G C FOXL1 Silent p.R116R 0.44 TCGA-55-8506-01 16 87743023 87743023 C G KLHDC4 Missense_Mutation p.R432P 0.45 deleterious(0) probably_damaging(1) TCGA-55-8506-01 16 89828358 89828358 G A FANCA Missense_Mutation p.R951W 0.12 deleterious(0) possibly_damaging(0.689) TCGA-55-8506-01 16 90002206 90002207 - A TUBB3 Frame_Shift_Ins p.*451Vfs*38 0.46 TCGA-55-8506-01 17 10348411 10348411 A T MYH4 Missense_Mutation p.L1783Q 0.30 deleterious(0.01) probably_damaging(0.976) TCGA-55-8506-01 17 10533167 10533167 C A MYH3 Nonsense_Mutation p.E1884* 0.26 TCGA-55-8506-01 17 11648132 11648132 C T DNAH9 Silent p.L2044L 0.21 TCGA-55-8506-01 17 16004911 16004911 C A NCOR1 Missense_Mutation p.E781D 0.31 possibly_damaging(0.706) TCGA-55-8506-01 17 16029514 16029514 C A NCOR1 Missense_Mutation p.A506S 0.23 benign(0.081) TCGA-55-8506-01 17 16326847 16326847 G T TRPV2 Missense_Mutation p.E230D 0.21 tolerated(0.15) benign(0.006) TCGA-55-8506-01 17 1636085 1636085 G T WDR81 Missense_Mutation p.E1483D 0.42 deleterious(0.02) possibly_damaging(0.681) TCGA-55-8506-01 17 171085 171085 C T RPH3AL Missense_Mutation p.V67I 0.24 tolerated(0.2) benign(0.013) TCGA-55-8506-01 17 18061065 18061065 G T MYO15A Missense_Mutation p.V2940L 0.29 unknown(0) TCGA-55-8506-01 17 18681912 18681912 C T FBXW10 Silent p.S820S 0.14 TCGA-55-8506-01 17 18682537 18682537 G A FBXW10 Missense_Mutation p.G1029S 0.32 deleterious(0.03) possibly_damaging(0.45) TCGA-55-8506-01 17 19284396 19284396 G T MAPK7 Nonsense_Mutation p.E292* 0.31 TCGA-55-8506-01 17 20209366 20209366 G A SPECC1 Missense_Mutation p.A1030T 0.30 deleterious(0) possibly_damaging(0.861) TCGA-55-8506-01 17 20353291 20353291 T A LGALS9B Missense_Mutation p.T355S 0.23 deleterious(0.01) benign(0.053) TCGA-55-8506-01 17 2278813 2278813 C - SGSM2 Frame_Shift_Del p.P711Rfs*58 0.20 TCGA-55-8506-01 17 2278921 2278921 G A SGSM2 Missense_Mutation p.D746N 0.25 deleterious(0.04) benign(0.036) TCGA-55-8506-01 17 26646170 26646170 G A TMEM97 5'UTR 0.33 TCGA-55-8506-01 17 27020724 27020729 ACTTTG - SUPT6H In_Frame_Del p.F1216_D1217del 0.26 TCGA-55-8506-01 17 27493546 27493546 C T MYO18A Missense_Mutation p.R138H 0.18 deleterious_low_confidence(0.03) benign(0.02) TCGA-55-8506-01 17 2901670 2901670 G T RAP1GAP2 Missense_Mutation p.K400N 0.56 deleterious(0.01) benign(0.255) TCGA-55-8506-01 17 30348928 30348928 G T LRRC37B Missense_Mutation p.V255F 0.26 tolerated(0.16) benign(0.025) TCGA-55-8506-01 17 30807770 30807770 G T PSMD11 Splice_Site 0.44 TCGA-55-8506-01 17 32583785 32583785 A G CCL2 Missense_Mutation p.Q80R 0.36 deleterious(0.02) possibly_damaging(0.703) TCGA-55-8506-01 17 32688864 32688864 G A CCL1 Missense_Mutation p.P43L 0.33 tolerated(0.11) possibly_damaging(0.481) TCGA-55-8506-01 17 32954025 32954025 C A TMEM132E Missense_Mutation p.A226D 0.18 deleterious(0.02) benign(0.342) TCGA-55-8506-01 17 32954026 32954026 C A TMEM132E Silent p.A226A 0.19 TCGA-55-8506-01 17 33339091 33339091 C A RFFL Nonsense_Mutation p.E330* 0.34 TCGA-55-8506-01 17 34062246 34062246 G T RASL10B Missense_Mutation p.V15L 0.33 deleterious(0) probably_damaging(0.983) TCGA-55-8506-01 17 34068119 34068119 G A RASL10B Missense_Mutation p.R136H 0.11 deleterious(0.05) possibly_damaging(0.806) TCGA-55-8506-01 17 3436101 3436101 G A TRPV3 Silent p.T305T 0.47 TCGA-55-8506-01 17 37265552 37265552 C G PLXDC1 Silent p.R116R 0.32 TCGA-55-8506-01 17 37902407 37902407 C T GRB7 Silent p.V491V 0.34 TCGA-55-8506-01 17 3801387 3801387 G T P2RX1 Missense_Mutation p.D350E 0.15 deleterious(0) probably_damaging(1) TCGA-55-8506-01 17 3807690 3807690 G T P2RX1 Missense_Mutation p.P121T 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-55-8506-01 17 38349915 38349915 G T RAPGEFL1 Splice_Site p.X416_splice 0.19 TCGA-55-8506-01 17 38420958 38420958 C A WIPF2 Missense_Mutation p.P177H 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 17 38859560 38859560 C A KRT24 Missense_Mutation p.G129V 0.09 deleterious(0.04) unknown(0) TCGA-55-8506-01 17 38906727 38906727 C A KRT25 Missense_Mutation p.E360D 0.05 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 17 38907525 38907525 G A KRT25 Silent p.N241N 0.36 TCGA-55-8506-01 17 39182992 39182992 G A KRTAP1-5 Missense_Mutation p.T139M 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-55-8506-01 17 39261990 39261990 C A KRTAP4-9 Missense_Mutation p.P117H 0.27 deleterious(0) unknown(0) TCGA-55-8506-01 17 39471688 39471688 C T KRTAP17-1 Missense_Mutation p.G72E 0.39 unknown(0) TCGA-55-8506-01 17 39658986 39658986 G T KRT13 Missense_Mutation p.R326S 0.34 deleterious(0) probably_damaging(0.971) TCGA-55-8506-01 17 40690460 40690460 G C NAGLU Missense_Mutation p.G212A 0.17 deleterious(0.02) benign(0.434) TCGA-55-8506-01 17 40717805 40717805 G C COASY Silent p.P567P 0.33 TCGA-55-8506-01 17 40817826 40817826 C T TUBG2 Missense_Mutation p.P275L 0.27 deleterious(0) probably_damaging(0.996) TCGA-55-8506-01 17 40914377 40914377 G A RAMP2 Silent p.G56G 0.27 TCGA-55-8506-01 17 40932968 40932968 C T WNK4 Silent p.P84P 0.14 TCGA-55-8506-01 17 41143703 41143703 C T RUNDC1 Silent p.R604R 0.08 TCGA-55-8506-01 17 41143801 41143801 G T RUNDC1 3'UTR 0.36 TCGA-55-8506-01 17 41931257 41931257 C A CD300LG Silent p.S188S 0.31 TCGA-55-8506-01 17 41959867 41959867 G A MPP2 Missense_Mutation p.R156C 0.16 deleterious(0) probably_damaging(0.986) TCGA-55-8506-01 17 42158177 42158177 C T HDAC5 Missense_Mutation p.R895H 0.10 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 17 42249669 42249669 C A ASB16 Missense_Mutation p.P186H 0.27 deleterious(0.05) possibly_damaging(0.665) TCGA-55-8506-01 17 42335534 42335534 G T SLC4A1 Missense_Mutation p.P368T 0.29 tolerated(0.07) benign(0.045) TCGA-55-8506-01 17 42978362 42978362 A - FAM187A 5'UTR 0.27 TCGA-55-8506-01 17 46654075 46654075 G T HOXB4 3'UTR 0.30 TCGA-55-8506-01 17 4692555 4692555 C A GLTPD2 Silent p.P47P 0.33 TCGA-55-8506-01 17 4805387 4805387 G T CHRNE Intron 0.28 TCGA-55-8506-01 17 48596044 48596044 G A MYCBPAP Missense_Mutation p.R247H 0.08 tolerated(0.5) benign(0.123) TCGA-55-8506-01 17 4923972 4923972 A T KIF1C Missense_Mutation p.R646W 0.54 deleterious(0) possibly_damaging(0.869) TCGA-55-8506-01 17 4923973 4923973 G A KIF1C Missense_Mutation p.R646K 0.58 tolerated(0.2) benign(0.364) TCGA-55-8506-01 17 49270275 49270275 G A MBTD1 Missense_Mutation p.R520C 0.09 deleterious(0) probably_damaging(1) TCGA-55-8506-01 17 4937818 4937818 G A SLC52A1 Silent p.N28N 0.24 TCGA-55-8506-01 17 50008355 50008355 T A CA10 Missense_Mutation p.R92W 0.25 deleterious(0.01) benign(0.003) TCGA-55-8506-01 17 5041500 5041500 C G USP6 Missense_Mutation p.T337S 0.39 tolerated_low_confidence(0.23) benign(0.292) TCGA-55-8506-01 17 5051863 5051863 C T USP6 Missense_Mutation p.S815L 0.41 tolerated_low_confidence(0.18) benign(0.356) TCGA-55-8506-01 17 51901000 51901000 G A KIF2B Silent p.K202K 0.28 TCGA-55-8506-01 17 53046031 53046031 C T COX11 5'UTR 0.23 TCGA-55-8506-01 17 54517716 54517716 T C ANKFN1 Silent p.S316S 0.47 TCGA-55-8506-01 17 56355399 56355399 G A MPO Silent p.N331N 0.23 TCGA-55-8506-01 17 56389623 56389623 C T BZRAP1 Silent p.G853G 0.23 TCGA-55-8506-01 17 58577832 58577832 C T APPBP2 Missense_Mutation p.R52H 0.29 deleterious(0.02) possibly_damaging(0.613) TCGA-55-8506-01 17 59544957 59544957 G T TBX4 Missense_Mutation p.R163L 0.17 deleterious(0.01) possibly_damaging(0.796) TCGA-55-8506-01 17 59544958 59544958 G T TBX4 Silent p.R163R 0.17 TCGA-55-8506-01 17 59560456 59560456 G T TBX4 Missense_Mutation p.G406V 0.17 deleterious_low_confidence(0.03) benign(0.11) TCGA-55-8506-01 17 60758180 60758180 C T MRC2 Silent p.R831R 0.21 TCGA-55-8506-01 17 61987605 61987605 T A CSHL1 Missense_Mutation p.N130Y 0.11 deleterious(0) probably_damaging(0.998) TCGA-55-8506-01 17 62893373 62893373 C A LRRC37A3 Translation_Start_Site p.M1? 0.05 deleterious_low_confidence(0) benign(0.088) TCGA-55-8506-01 17 63221182 63221182 G A RGS9 Silent p.P490P 0.14 TCGA-55-8506-01 17 65052193 65052193 C T CACNG1 Missense_Mutation p.R159W 0.10 deleterious(0) probably_damaging(0.995) TCGA-55-8506-01 17 67247928 67247928 C G ABCA5 Missense_Mutation p.V1499L 0.50 tolerated(0.1) benign(0.164) TCGA-55-8506-01 17 67286057 67286058 - T ABCA5 Frame_Shift_Ins p.N576Kfs*35 0.10 TCGA-55-8506-01 17 7126991 7126991 T A ACADVL Missense_Mutation p.M427K 0.42 deleterious(0) possibly_damaging(0.882) TCGA-55-8506-01 17 7133647 7133647 C T DVL2 Missense_Mutation p.E123K 0.19 deleterious(0.05) probably_damaging(0.995) TCGA-55-8506-01 17 7137547 7137547 C A DVL2 Missense_Mutation p.G12V 0.45 deleterious(0.01) unknown(0) TCGA-55-8506-01 17 71394282 71394282 G - SDK2 Frame_Shift_Del p.S1083Vfs*66 0.24 TCGA-55-8506-01 17 7162192 7162195 AGAG - ELP5 Frame_Shift_Del p.R263Kfs*6 0.30 TCGA-55-8506-01 17 7214920 7214921 AG - EIF5A Frame_Shift_Del p.E173Gfs*53 0.16 TCGA-55-8506-01 17 72283194 72283194 G T DNAI2 Missense_Mutation p.V142L 0.18 tolerated(0.88) benign(0.001) TCGA-55-8506-01 17 72578396 72578396 G T CD300LD Missense_Mutation p.T145K 0.10 tolerated(0.12) benign(0.074) TCGA-55-8506-01 17 7306508 7306508 G A TMEM256 Silent p.S73S 0.36 TCGA-55-8506-01 17 73489806 73489806 G A KIAA0195 Missense_Mutation p.R739Q 0.10 deleterious(0) probably_damaging(0.995) TCGA-55-8506-01 17 73499758 73499758 C T CASKIN2 Nonsense_Mutation p.W554* 0.12 TCGA-55-8506-01 17 73501574 73501574 G A CASKIN2 Intron 0.16 TCGA-55-8506-01 17 73627632 73627632 C T RECQL5 Missense_Mutation p.R449H 0.10 tolerated(0.6) benign(0.004) TCGA-55-8506-01 17 73824987 73824987 G A UNC13D Missense_Mutation p.A1011V 0.23 deleterious(0.01) benign(0.392) TCGA-55-8506-01 17 74072917 74072917 G A GALR2 Missense_Mutation p.C190Y 0.09 deleterious(0.01) possibly_damaging(0.879) TCGA-55-8506-01 17 74077707 74077707 G - ZACN Frame_Shift_Del p.L253Cfs*10 0.11 TCGA-55-8506-01 17 74274102 74274102 G A QRICH2 Silent p.H1529H 0.25 TCGA-55-8506-01 17 74732955 74732956 - G SRSF2 Frame_Shift_Ins p.D97Gfs*27 0.15 TCGA-55-8506-01 17 7578469 7578469 C A TP53 Missense_Mutation p.G154V 0.43 deleterious(0) probably_damaging(0.961) TCGA-55-8506-01 17 76130053 76130053 A T TMC8 Missense_Mutation p.K263M 0.20 deleterious(0) probably_damaging(0.936) TCGA-55-8506-01 17 76137155 76137155 G A TMC8 Missense_Mutation p.A715T 0.23 tolerated_low_confidence(0.09) benign(0.001) TCGA-55-8506-01 17 76183437 76183437 G A AFMID 5'Flank 0.26 TCGA-55-8506-01 17 76525651 76525651 G A DNAH17 Missense_Mutation p.A1137V 0.11 benign(0.002) TCGA-55-8506-01 17 76851807 76851807 G A TIMP2 Missense_Mutation p.A202V 0.15 deleterious(0.01) probably_damaging(0.976) TCGA-55-8506-01 17 77755612 77755612 C T CBX2 Intron 0.07 TCGA-55-8506-01 17 78022509 78022509 C T CCDC40 Silent p.D268D 0.16 TCGA-55-8506-01 17 78090813 78090814 - G GAA Frame_Shift_Ins p.E748Gfs*48 0.14 TCGA-55-8506-01 17 78093091 78093091 G A GAA Silent p.S940S 0.13 TCGA-55-8506-01 17 78163618 78163618 C A CARD14 Missense_Mutation p.R304S 0.14 deleterious(0) probably_damaging(0.967) TCGA-55-8506-01 17 79205580 79205580 C T ENTHD2 Intron 0.33 TCGA-55-8506-01 17 79846182 79846182 T G ALYREF Silent p.R239R 0.22 TCGA-55-8506-01 17 80050629 80050629 C G FASN Missense_Mutation p.A280P 0.17 deleterious(0.01) benign(0.211) TCGA-55-8506-01 17 80373317 80373317 C A OGFOD3 Missense_Mutation p.E87D 0.12 tolerated(0.19) possibly_damaging(0.501) TCGA-55-8506-01 17 80788197 80788197 G C ZNF750 Missense_Mutation p.Q665E 0.52 tolerated(1) benign(0.007) TCGA-55-8506-01 17 8370439 8370439 G A NDEL1 3'UTR 0.52 TCGA-55-8506-01 18 10534471 10534471 A T NAPG Missense_Mutation p.E79V 0.43 deleterious(0) probably_damaging(0.996) TCGA-55-8506-01 18 11868660 11868660 C A GNAL Missense_Mutation p.N343K 0.16 deleterious(0) probably_damaging(0.957) TCGA-55-8506-01 18 21059325 21059325 A G RIOK3 Silent p.E463E 0.09 TCGA-55-8506-01 18 21115556 21115556 G T NPC1 Silent p.G1118G 0.21 TCGA-55-8506-01 18 23637672 23637672 C A SS18 Missense_Mutation p.G89V 0.16 tolerated_low_confidence(0.07) probably_damaging(0.999) TCGA-55-8506-01 18 25593647 25593647 C A CDH2 Missense_Mutation p.K133N 0.47 tolerated(0.37) benign(0.021) TCGA-55-8506-01 18 2572988 2572988 A G NDC80 Missense_Mutation p.K2E 0.11 tolerated(0.45) benign(0.038) TCGA-55-8506-01 18 28993184 28993184 T A DSG4 Missense_Mutation p.C936S 0.54 tolerated(0.45) benign(0.02) TCGA-55-8506-01 18 29054177 29054177 G T DSG3 Missense_Mutation p.G732V 0.47 tolerated(0.49) benign(0.257) TCGA-55-8506-01 18 29126544 29126544 T C DSG2 Silent p.T1065T 0.14 TCGA-55-8506-01 18 3116340 3116340 C A MYOM1 Missense_Mutation p.V1098L 0.18 tolerated(0.22) benign(0.007) TCGA-55-8506-01 18 31323498 31323498 T A ASXL3 Missense_Mutation p.M1229K 0.38 benign(0.005) TCGA-55-8506-01 18 32398187 32398187 C G DTNA Missense_Mutation p.R257G 0.34 deleterious(0) probably_damaging(0.972) TCGA-55-8506-01 18 331745 331745 C T COLEC12 Silent p.E662E 0.59 TCGA-55-8506-01 18 33935539 33935539 C T FHOD3 Missense_Mutation p.A68V 0.37 tolerated(0.37) benign(0.022) TCGA-55-8506-01 18 33952676 33952676 G A FHOD3 Silent p.T102T 0.48 TCGA-55-8506-01 18 39567840 39567840 G A PIK3C3 Missense_Mutation p.R199K 0.09 deleterious(0.03) benign(0.188) TCGA-55-8506-01 18 43319537 43319537 T C SLC14A1 Missense_Mutation p.W342R 0.11 deleterious(0.01) probably_damaging(0.937) TCGA-55-8506-01 18 43329756 43329756 C A SLC14A1 Missense_Mutation p.A393D 0.47 deleterious(0) possibly_damaging(0.681) TCGA-55-8506-01 18 43483969 43483969 G T EPG5 Silent p.S1481S 0.46 TCGA-55-8506-01 18 44435527 44435527 C T PIAS2 Splice_Site p.X212_splice 0.28 TCGA-55-8506-01 18 45555913 45555913 C A ZBTB7C Silent p.P526P 0.16 TCGA-55-8506-01 18 46889571 46889571 G A DYM Silent p.L152L 0.21 TCGA-55-8506-01 18 47101831 47101831 T C LIPG Missense_Mutation p.Y222H 0.15 deleterious(0.03) benign(0.169) TCGA-55-8506-01 18 47107814 47107814 G T LIPG Nonsense_Mutation p.E275* 0.15 TCGA-55-8506-01 18 47421356 47421357 - T MYO5B Frame_Shift_Ins p.I1001Dfs*12 0.24 TCGA-55-8506-01 18 55024674 55024674 C A ST8SIA3 Missense_Mutation p.P278Q 0.49 probably_damaging(0.997) TCGA-55-8506-01 18 55998073 55998073 A T NEDD4L Missense_Mutation p.E306V 0.47 tolerated(0.14) benign(0.137) TCGA-55-8506-01 18 56202928 56202928 G T ALPK2 Silent p.P1497P 0.33 TCGA-55-8506-01 18 59157738 59157738 T G CDH20 5'UTR 0.11 TCGA-55-8506-01 18 61460403 61460403 C T SERPINB7 Silent p.L76L 0.36 TCGA-55-8506-01 18 61471805 61471805 C A SERPINB7 Missense_Mutation p.P360Q 0.38 deleterious(0) probably_damaging(1) TCGA-55-8506-01 18 65178971 65178971 T - DSEL Frame_Shift_Del p.R969Efs*16 0.20 TCGA-55-8506-01 18 66344267 66344267 A G TMX3 Missense_Mutation p.I423T 0.14 tolerated_low_confidence(0.76) benign(0) TCGA-55-8506-01 18 67759919 67759919 C A RTTN Missense_Mutation p.G1342V 0.44 deleterious(0.04) benign(0.064) TCGA-55-8506-01 18 71822592 71822592 G T TIMM21 Missense_Mutation p.S139I 0.12 deleterious(0) possibly_damaging(0.908) TCGA-55-8506-01 18 7231613 7231613 C T LRRC30 Silent p.F159F 0.17 TCGA-55-8506-01 18 76754197 76754197 C T SALL3 Missense_Mutation p.R736C 0.17 deleterious(0) probably_damaging(0.987) TCGA-55-8506-01 18 77193703 77193703 G T NFATC1 Missense_Mutation p.V438L 0.37 deleterious(0) possibly_damaging(0.774) TCGA-55-8506-01 18 77246411 77246411 G A NFATC1 Silent p.P739P 0.27 TCGA-55-8506-01 18 77895496 77895496 G A ADNP2 Missense_Mutation p.A734T 0.14 deleterious(0.01) probably_damaging(0.969) TCGA-55-8506-01 18 8085781 8085781 C T PTPRM Missense_Mutation p.P555L 0.12 deleterious(0) probably_damaging(1) TCGA-55-8506-01 18 8824793 8824793 G T SOGA2 Missense_Mutation p.E1095D 0.05 tolerated(0.84) benign(0.03) TCGA-55-8506-01 19 10088272 10088272 G T COL5A3 Silent p.R1042R 0.19 TCGA-55-8506-01 19 10403740 10403740 C T ICAM5 Missense_Mutation p.T428M 0.13 deleterious(0.01) possibly_damaging(0.5) TCGA-55-8506-01 19 10415842 10415842 C A ZGLP1 Silent p.V247V 0.32 TCGA-55-8506-01 19 1052101 1052101 C A ABCA7 Silent p.R1041R 0.22 TCGA-55-8506-01 19 10528391 10528391 G A PDE4A 5'Flank 0.21 TCGA-55-8506-01 19 10597355 10597355 C A KEAP1 Missense_Mutation p.Q616H 0.28 tolerated(0.15) benign(0.033) TCGA-55-8506-01 19 11097630 11097630 C T SMARCA4 Silent p.P270P 0.32 TCGA-55-8506-01 19 11470244 11470244 C T DKFZP761J1410 Intron 0.15 TCGA-55-8506-01 19 11598615 11598615 C T ZNF653 Silent p.A221A 0.19 TCGA-55-8506-01 19 11917606 11917606 T - ZNF491 Frame_Shift_Del p.Y281Tfs*164 0.13 TCGA-55-8506-01 19 13059014 13059014 A T RAD23A Silent p.S86S 0.35 TCGA-55-8506-01 19 13563771 13563771 A G CACNA1A Missense_Mutation p.I153T 0.26 benign(0.291) TCGA-55-8506-01 19 14030640 14030640 C A CC2D1A Missense_Mutation p.P411Q 0.31 deleterious(0) possibly_damaging(0.882) TCGA-55-8506-01 19 14073961 14073961 G A RFX1 Silent p.G899G 0.26 TCGA-55-8506-01 19 14707927 14707927 A T CLEC17A Missense_Mutation p.E200D 0.27 tolerated(0.08) benign(0.006) TCGA-55-8506-01 19 14707960 14707960 G T CLEC17A Silent p.T211T 0.35 TCGA-55-8506-01 19 15535511 15535511 G A WIZ Missense_Mutation p.R648W 0.25 deleterious(0) probably_damaging(0.944) TCGA-55-8506-01 19 15728948 15728948 T G AD000091.2 5'Flank 0.31 TCGA-55-8506-01 19 15852501 15852501 T A OR10H3 Missense_Mutation p.I100N 0.04 tolerated(0.17) benign(0) TCGA-55-8506-01 19 15852502 15852502 T C OR10H3 Silent p.I100I 0.04 TCGA-55-8506-01 19 15904957 15904957 G C OR10H5 Silent p.L33L 0.30 TCGA-55-8506-01 19 16238893 16238893 G T RAB8A Missense_Mutation p.V158L 0.24 deleterious(0.01) possibly_damaging(0.455) TCGA-55-8506-01 19 16643458 16643458 C T CHERP Missense_Mutation p.E209K 0.14 deleterious(0.05) benign(0.114) TCGA-55-8506-01 19 17598328 17598328 G A SLC27A1 Missense_Mutation p.V262M 0.43 deleterious(0.01) probably_damaging(0.931) TCGA-55-8506-01 19 17660464 17660464 C A FAM129C Intron 0.25 TCGA-55-8506-01 19 1784932 1784932 G T ATP8B3 Missense_Mutation p.S1182R 0.40 deleterious(0) benign(0.008) TCGA-55-8506-01 19 18092887 18092887 A G KCNN1 Missense_Mutation p.S290G 0.43 tolerated(0.07) benign(0.048) TCGA-55-8506-01 19 1827553 1827553 C T REXO1 Missense_Mutation p.R412H 0.19 tolerated(0.5) benign(0.001) TCGA-55-8506-01 19 18576369 18576369 G A ELL Silent p.L108L 0.30 TCGA-55-8506-01 19 19655451 19655451 C A CILP2 Silent p.R699R 0.29 TCGA-55-8506-01 19 20215047 20215047 G T ZNF90 Splice_Site p.X2_splice 0.12 TCGA-55-8506-01 19 2039645 2039645 C T MKNK2 Silent p.S455S 0.10 TCGA-55-8506-01 19 22155794 22155794 G T ZNF208 Missense_Mutation p.T681N 0.27 tolerated(0.41) benign(0.036) TCGA-55-8506-01 19 22156965 22156965 C A ZNF208 Missense_Mutation p.G291C 0.11 deleterious(0) possibly_damaging(0.63) TCGA-55-8506-01 19 22156967 22156967 C A ZNF208 Missense_Mutation p.C290F 0.11 deleterious(0) probably_damaging(0.946) TCGA-55-8506-01 19 22362815 22362815 T C ZNF676 Silent p.K568K 0.25 TCGA-55-8506-01 19 22362844 22362844 T A ZNF676 Nonsense_Mutation p.K559* 0.22 TCGA-55-8506-01 19 2246936 2246936 C T SF3A2 Missense_Mutation p.A154V 0.37 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-55-8506-01 19 22605067 22605067 C A ZNF98 5'UTR 0.27 TCGA-55-8506-01 19 30935395 30935395 C A ZNF536 Missense_Mutation p.A309D 0.25 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 19 30936591 30936591 G T ZNF536 Missense_Mutation p.G708W 0.31 deleterious(0) probably_damaging(1) TCGA-55-8506-01 19 31039221 31039221 G T ZNF536 Nonsense_Mutation p.E899* 0.29 TCGA-55-8506-01 19 31040234 31040234 G T ZNF536 Missense_Mutation p.Q1236H 0.30 tolerated_low_confidence(0.07) benign(0.213) TCGA-55-8506-01 19 31767987 31767987 C A TSHZ3 Silent p.L904L 0.32 TCGA-55-8506-01 19 31769605 31769605 C A TSHZ3 Missense_Mutation p.R365L 0.28 deleterious(0) probably_damaging(0.998) TCGA-55-8506-01 19 3179224 3179224 C T S1PR4 Missense_Mutation p.A145V 0.36 tolerated(0.41) benign(0.01) TCGA-55-8506-01 19 3198891 3198891 C - NCLN Frame_Shift_Del p.W233Gfs*179 0.25 TCGA-55-8506-01 19 32845253 32845253 G T ZNF507 Missense_Mutation p.R506I 0.29 deleterious(0) probably_damaging(0.944) TCGA-55-8506-01 19 33465102 33465102 G T C19orf40 Missense_Mutation p.C127F 0.29 tolerated(0.1) benign(0.202) TCGA-55-8506-01 19 33608752 33608752 G A GPATCH1 Missense_Mutation p.A740T 0.10 tolerated(0.4) benign(0.001) TCGA-55-8506-01 19 33635776 33635776 C T WDR88 Silent p.R138R 0.18 TCGA-55-8506-01 19 33870107 33870107 A G CEBPG 5'UTR 0.18 TCGA-55-8506-01 19 34291369 34291369 C T KCTD15 Missense_Mutation p.R4C 0.17 tolerated_low_confidence(0.07) possibly_damaging(0.689) TCGA-55-8506-01 19 35551311 35551311 G A HPN Missense_Mutation p.G172D 0.32 deleterious(0) probably_damaging(0.998) TCGA-55-8506-01 19 35829151 35829151 C A CD22 Missense_Mutation p.L356M 0.22 tolerated(0.11) possibly_damaging(0.726) TCGA-55-8506-01 19 35849881 35849881 C A FFAR3 Missense_Mutation p.P30H 0.07 deleterious(0) probably_damaging(1) TCGA-55-8506-01 19 35941406 35941406 C T FFAR2 Missense_Mutation p.L264F 0.34 tolerated(0.49) benign(0.186) TCGA-55-8506-01 19 36004429 36004429 C T DMKN 5'UTR 0.39 TCGA-55-8506-01 19 36045906 36045906 G A ATP4A Missense_Mutation p.P800L 0.33 deleterious(0.01) benign(0.024) TCGA-55-8506-01 19 36164163 36164163 C A UPK1A Silent p.I105I 0.31 TCGA-55-8506-01 19 36349430 36349430 G A KIRREL2 Missense_Mutation p.R111H 0.12 deleterious(0) probably_damaging(0.975) TCGA-55-8506-01 19 36435504 36435504 G A LRFN3 Silent p.R490R 0.18 TCGA-55-8506-01 19 36517093 36517093 C T CLIP3 Missense_Mutation p.A213T 0.19 tolerated(0.11) benign(0.284) TCGA-55-8506-01 19 37118463 37118463 T - ZNF382 3'UTR 0.13 TCGA-55-8506-01 19 3750666 3750666 C T TJP3 Missense_Mutation p.P924L 0.27 deleterious(0) probably_damaging(1) TCGA-55-8506-01 19 38189415 38189415 C - ZNF607 Frame_Shift_Del p.K540Sfs*184 0.18 TCGA-55-8506-01 19 38874039 38874039 G T PSMD8 3'UTR 0.26 TCGA-55-8506-01 19 38948884 38948884 G A RYR1 Missense_Mutation p.G707S 0.21 probably_damaging(0.999) TCGA-55-8506-01 19 39023341 39023341 G A RYR1 Missense_Mutation p.G3742S 0.24 benign(0.047) TCGA-55-8506-01 19 39034012 39034012 G A RYR1 Silent p.Q3905Q 0.27 TCGA-55-8506-01 19 39086640 39086640 C T MAP4K1 Silent p.E706E 0.05 TCGA-55-8506-01 19 39517531 39517531 C T FBXO27 Nonsense_Mutation p.W229* 0.27 TCGA-55-8506-01 19 3959300 3959300 G A DAPK3 Silent p.T388T 0.24 TCGA-55-8506-01 19 3960103 3960103 C G DAPK3 Splice_Site p.X261_splice 0.26 TCGA-55-8506-01 19 39664005 39664005 C T PAK4 Missense_Mutation p.R218W 0.15 deleterious(0.01) benign(0.183) TCGA-55-8506-01 19 39788687 39788687 G T IFNL1 Missense_Mutation p.E111D 0.29 tolerated(0.23) benign(0.001) TCGA-55-8506-01 19 39804986 39804986 C A LRFN1 Missense_Mutation p.V331L 0.18 deleterious(0) possibly_damaging(0.596) TCGA-55-8506-01 19 39826655 39826655 G T GMFG 5'UTR 0.22 TCGA-55-8506-01 19 3983168 3983168 C A EEF2 Nonsense_Mutation p.E114* 0.28 TCGA-55-8506-01 19 39882062 39882062 G C MED29 Missense_Mutation p.K21N 0.27 deleterious_low_confidence(0.02) benign(0.403) TCGA-55-8506-01 19 39915327 39915327 G T PLEKHG2 Missense_Mutation p.S1185I 0.10 deleterious_low_confidence(0) benign(0.235) TCGA-55-8506-01 19 39955569 39955569 G C SUPT5H Missense_Mutation p.Q252H 0.32 deleterious(0) probably_damaging(0.997) TCGA-55-8506-01 19 40337032 40337032 C A FBL 5'UTR 0.20 TCGA-55-8506-01 19 40368344 40368344 G A FCGBP Missense_Mutation p.A4335V 0.05 probably_damaging(0.975) TCGA-55-8506-01 19 41281460 41281460 C T MIA Silent p.L5L 0.14 TCGA-55-8506-01 19 41596036 41596036 G A CYP2A13 Missense_Mutation p.R143H 0.16 deleterious(0.01) benign(0.083) TCGA-55-8506-01 19 41600928 41600928 G A CYP2A13 Missense_Mutation p.R409Q 0.30 tolerated(0.34) benign(0.001) TCGA-55-8506-01 19 42213709 42213709 C A CEA Missense_Mutation p.P59T 0.25 tolerated(0.18) benign(0.411) TCGA-55-8506-01 19 42213710 42213710 C A CEA Missense_Mutation p.P59H 0.24 deleterious(0) probably_damaging(0.988) TCGA-55-8506-01 19 42381319 42381319 G A CD79A 5'UTR 0.20 TCGA-55-8506-01 19 4258387 4258387 G T CCDC94 Missense_Mutation p.R185M 0.33 deleterious(0.01) possibly_damaging(0.492) TCGA-55-8506-01 19 42838298 42838298 G - MEGF8 Frame_Shift_Del p.G166Vfs*53 0.20 TCGA-55-8506-01 19 43259146 43259146 C A PSG8 Missense_Mutation p.V328F 0.24 deleterious(0) benign(0.34) TCGA-55-8506-01 19 43262389 43262389 G T PSG8 Silent p.P158P 0.18 TCGA-55-8506-01 19 43376148 43376148 C A PSG1 Missense_Mutation p.E160D 0.28 deleterious(0) probably_damaging(0.932) TCGA-55-8506-01 19 43772240 43772240 T A PSG9 Silent p.P42P 0.32 TCGA-55-8506-01 19 44102995 44102995 C - ZNF576 Frame_Shift_Del p.P34Rfs*20 0.23 TCGA-55-8506-01 19 44112128 44112128 G A ZNF428 Missense_Mutation p.R70C 0.21 tolerated_low_confidence(0.06) probably_damaging(0.988) TCGA-55-8506-01 19 44118417 44118417 C T ZNF428 Missense_Mutation p.A14T 0.09 deleterious_low_confidence(0) benign(0.174) TCGA-55-8506-01 19 44223091 44223091 G T IRGC Missense_Mutation p.K127N 0.40 tolerated(0.08) probably_damaging(0.963) TCGA-55-8506-01 19 44271811 44271811 G T KCNN4 Silent p.R390R 0.21 TCGA-55-8506-01 19 44284948 44284950 CTC - KCNN4 In_Frame_Del p.E22del 0.28 TCGA-55-8506-01 19 4491814 4491814 G - HDGFRP2 Frame_Shift_Del p.G222Dfs*49 0.14 TCGA-55-8506-01 19 44933673 44933673 G A ZNF229 Missense_Mutation p.T428I 0.23 deleterious(0.04) probably_damaging(0.998) TCGA-55-8506-01 19 45015107 45015107 T - CEACAM20 RNA 0.11 TCGA-55-8506-01 19 4544472 4544472 G A SEMA6B Missense_Mutation p.S603L 0.17 tolerated(0.11) benign(0.078) TCGA-55-8506-01 19 45515439 45515439 G A RELB Missense_Mutation p.G137S 0.49 deleterious(0.01) probably_damaging(0.959) TCGA-55-8506-01 19 45540824 45540824 C - RELB Frame_Shift_Del p.P507Rfs*28 0.37 TCGA-55-8506-01 19 45889086 45889086 C T PPP1R13L Missense_Mutation p.G693S 0.20 deleterious(0.02) probably_damaging(0.987) TCGA-55-8506-01 19 45899517 45899517 C A PPP1R13L Missense_Mutation p.R271L 0.33 deleterious(0) benign(0.197) TCGA-55-8506-01 19 46002352 46002352 C T PPM1N Missense_Mutation p.R208C 0.32 deleterious(0) probably_damaging(0.997) TCGA-55-8506-01 19 46094350 46094350 C T GPR4 Missense_Mutation p.G259S 0.10 tolerated(0.91) benign(0.021) TCGA-55-8506-01 19 463927 463927 G T ODF3L2 Missense_Mutation p.R263S 0.23 deleterious(0) probably_damaging(0.997) TCGA-55-8506-01 19 46543644 46543644 G T IGFL4 Missense_Mutation p.P34H 0.29 deleterious(0) benign(0.424) TCGA-55-8506-01 19 46973326 46973326 G A PNMAL1 Missense_Mutation p.R323W 0.15 deleterious(0.04) benign(0.029) TCGA-55-8506-01 19 46974154 46974154 G T PNMAL1 Missense_Mutation p.L47I 0.27 deleterious(0.02) possibly_damaging(0.567) TCGA-55-8506-01 19 4839317 4839317 G A PLIN3 Missense_Mutation p.R398C 0.20 deleterious(0.02) probably_damaging(0.993) TCGA-55-8506-01 19 48653362 48653362 G A LIG1 Missense_Mutation p.T227M 0.16 tolerated(0.24) benign(0.032) TCGA-55-8506-01 19 49106851 49106851 C T FAM83E Missense_Mutation p.R359H 0.50 tolerated(0.15) benign(0.016) TCGA-55-8506-01 19 49184013 49184013 C A RN7SL345P 5'Flank 0.22 TCGA-55-8506-01 19 49814298 49814298 G T SLC6A16 Missense_Mutation p.R103S 0.27 deleterious(0) probably_damaging(0.992) TCGA-55-8506-01 19 49863429 49863429 C A TEAD2 Intron 0.56 TCGA-55-8506-01 19 50027791 50027791 G T FCGRT Missense_Mutation p.R210L 0.31 deleterious(0.01) probably_damaging(1) TCGA-55-8506-01 19 50496116 50496116 C A VRK3 Splice_Site p.X321_splice 0.29 TCGA-55-8506-01 19 50862277 50862277 G A NAPSA Silent p.Y342Y 0.17 TCGA-55-8506-01 19 50939886 50939886 G T MYBPC2 Nonsense_Mutation p.E120* 0.18 TCGA-55-8506-01 19 51021620 51021620 C A LRRC4B Silent p.T450T 0.25 TCGA-55-8506-01 19 51165381 51165381 C G SHANK1 Missense_Mutation p.W2109C 0.30 unknown(0) TCGA-55-8506-01 19 51220084 51220084 G T SHANK1 Missense_Mutation p.D31E 0.18 possibly_damaging(0.84) TCGA-55-8506-01 19 51328957 51328957 G T KLK15 3'Flank 0.53 TCGA-55-8506-01 19 51738913 51738913 C A CD33 Silent p.T302T 0.20 TCGA-55-8506-01 19 51958853 51958853 A C SIGLEC8 Silent p.P290P 0.10 TCGA-55-8506-01 19 52133249 52133249 G C SIGLEC5 Silent p.T86T 0.16 TCGA-55-8506-01 19 52618819 52618819 C A ZNF616 Missense_Mutation p.R533L 0.36 tolerated(0.21) benign(0.008) TCGA-55-8506-01 19 52918959 52918959 C T ZNF528 Missense_Mutation p.A285V 0.17 tolerated(0.25) benign(0.003) TCGA-55-8506-01 19 53453535 53453535 C T ZNF816 Missense_Mutation p.R498H 0.10 tolerated(0.37) benign(0.003) TCGA-55-8506-01 19 53762774 53762774 C A VN1R2 Nonsense_Mutation p.C382* 0.32 TCGA-55-8506-01 19 53793438 53793438 G T BIRC8 Missense_Mutation p.P64T 0.29 deleterious(0) probably_damaging(0.992) TCGA-55-8506-01 19 54255668 54255668 T C MIR519A1 RNA 0.36 TCGA-55-8506-01 19 54304549 54304549 C A NLRP12 Silent p.L896L 0.30 TCGA-55-8506-01 19 54304612 54304612 C A NLRP12 Missense_Mutation p.E875D 0.34 tolerated(1) benign(0.002) TCGA-55-8506-01 19 54406349 54406349 G A PRKCG Missense_Mutation p.G533E 0.32 deleterious(0) probably_damaging(0.948) TCGA-55-8506-01 19 54406350 54406350 G A PRKCG Silent p.G533G 0.32 TCGA-55-8506-01 19 54445681 54445681 C T CACNG7 3'UTR 0.46 TCGA-55-8506-01 19 54485486 54485486 G - CACNG8 Frame_Shift_Del p.V221Cfs*239 0.10 TCGA-55-8506-01 19 54652038 54652038 A G CNOT3 Silent p.P350P 0.18 TCGA-55-8506-01 19 54673269 54673269 C T TMC4 Nonsense_Mutation p.W147* 0.13 TCGA-55-8506-01 19 54744761 54744761 T C LILRA6 Missense_Mutation p.N301D 0.13 deleterious(0.02) probably_damaging(0.984) TCGA-55-8506-01 19 54782417 54782417 C A LILRB2 Splice_Site p.X319_splice 0.22 TCGA-55-8506-01 19 55174488 55174488 G A LILRB4 Translation_Start_Site p.M1? 0.25 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-55-8506-01 19 55221478 55221478 G T AC098784.2 3'Flank 0.30 TCGA-55-8506-01 19 55365408 55365408 G T KIR3DL2 Missense_Mutation p.V188F 0.26 deleterious(0.01) benign(0.43) TCGA-55-8506-01 19 55396756 55396756 G A FCAR Silent p.L60L 0.27 TCGA-55-8506-01 19 55750845 55750845 C T PPP6R1 Missense_Mutation p.R560H 0.29 deleterious(0) probably_damaging(0.947) TCGA-55-8506-01 19 56160413 56160413 A G CCDC106 Translation_Start_Site p.M1? 0.28 deleterious_low_confidence(0.01) benign(0.001) TCGA-55-8506-01 19 56206189 56206189 C - EPN1 Frame_Shift_Del p.P542Hfs*33 0.24 TCGA-55-8506-01 19 56223291 56223291 G T NLRP9 Silent p.A906A 0.23 TCGA-55-8506-01 19 56312964 56312964 C A NLRP11 Missense_Mutation p.E715D 0.27 tolerated(0.56) benign(0.026) TCGA-55-8506-01 19 56369433 56369433 G T NLRP4 Missense_Mutation p.R225I 0.28 deleterious(0) probably_damaging(0.972) TCGA-55-8506-01 19 56382275 56382275 G T NLRP4 Missense_Mutation p.D813Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-55-8506-01 19 56423477 56423477 A G NLRP13 Missense_Mutation p.L569S 0.30 deleterious(0) possibly_damaging(0.676) TCGA-55-8506-01 19 56539623 56539623 A T NLRP5 Missense_Mutation p.Q675L 0.20 deleterious(0.04) possibly_damaging(0.764) TCGA-55-8506-01 19 56539847 56539847 G T NLRP5 Missense_Mutation p.A750S 0.28 tolerated(0.43) benign(0.092) TCGA-55-8506-01 19 56544040 56544040 C A NLRP5 Missense_Mutation p.H780Q 0.17 deleterious(0.01) probably_damaging(0.983) TCGA-55-8506-01 19 56688562 56688562 C T GALP Missense_Mutation p.R29W 0.19 deleterious(0.01) benign(0.066) TCGA-55-8506-01 19 56954083 56954083 T G ZNF667 Missense_Mutation p.K94T 0.17 deleterious(0.03) benign(0.247) TCGA-55-8506-01 19 57325360 57325360 C A PEG3 Missense_Mutation p.G1484C 0.28 deleterious(0) probably_damaging(0.998) TCGA-55-8506-01 19 57335046 57335046 G A PEG3 Silent p.D132D 0.20 TCGA-55-8506-01 19 57642760 57642760 G T USP29 Missense_Mutation p.G906V 0.24 tolerated(0.07) benign(0.329) TCGA-55-8506-01 19 57642761 57642761 G T USP29 Silent p.G906G 0.24 TCGA-55-8506-01 19 58187714 58187714 G T ZSCAN4 Missense_Mutation p.R67S 0.30 tolerated(0.1) benign(0.026) TCGA-55-8506-01 19 58549479 58549479 G T ZSCAN1 Missense_Mutation p.S92I 0.10 tolerated(0.06) possibly_damaging(0.659) TCGA-55-8506-01 19 58573027 58573027 T C ZNF135 Missense_Mutation p.L50P 0.34 deleterious(0) probably_damaging(0.998) TCGA-55-8506-01 19 58573028 58573028 G T ZNF135 Silent p.L50L 0.33 TCGA-55-8506-01 19 58723888 58723888 A - ZNF274 Frame_Shift_Del p.K447Nfs*13 0.10 TCGA-55-8506-01 19 58928347 58928347 G T ZNF584 Silent p.V154V 0.28 TCGA-55-8506-01 19 59010872 59010872 C T SLC27A5 Missense_Mutation p.G552R 0.33 deleterious(0) probably_damaging(0.974) TCGA-55-8506-01 19 6307296 6307296 C T ACER1 Missense_Mutation p.S165N 0.11 tolerated(0.69) benign(0.006) TCGA-55-8506-01 19 6478987 6478987 C T DENND1C Missense_Mutation p.R86H 0.17 deleterious(0.03) benign(0.21) TCGA-55-8506-01 19 7143058 7143058 T C INSR Missense_Mutation p.T771A 0.10 deleterious(0.05) possibly_damaging(0.507) TCGA-55-8506-01 19 7267435 7267435 C A INSR Missense_Mutation p.K191N 0.26 tolerated(0.18) benign(0.189) TCGA-55-8506-01 19 7670159 7670159 G A CAMSAP3 Missense_Mutation p.A66T 0.12 deleterious(0.04) probably_damaging(0.978) TCGA-55-8506-01 19 8190877 8190877 G A FBN3 Missense_Mutation p.P877L 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 19 8954008 8954008 C A MBD3L1 3'Flank 0.38 TCGA-55-8506-01 19 9014572 9014572 C A MUC16 Silent p.L12801L 0.21 TCGA-55-8506-01 19 9017386 9017386 C A MUC16 Silent p.L12646L 0.08 TCGA-55-8506-01 19 9019279 9019279 G C MUC16 Silent p.P12536P 0.17 TCGA-55-8506-01 19 9047895 9047895 C A MUC16 Missense_Mutation p.A11246S 0.26 benign(0.008) TCGA-55-8506-01 19 9056249 9056249 G C MUC16 Silent p.T10399T 0.27 TCGA-55-8506-01 19 9062572 9062572 C T MUC16 Missense_Mutation p.A8292T 0.23 unknown(0) TCGA-55-8506-01 19 9066407 9066407 C A MUC16 Missense_Mutation p.M7013I 0.22 unknown(0) TCGA-55-8506-01 19 9082741 9082741 G T MUC16 Missense_Mutation p.S3025Y 0.30 unknown(0) TCGA-55-8506-01 19 9089510 9089510 C T MUC16 Missense_Mutation p.V769I 0.29 unknown(0) TCGA-55-8506-01 1 100340950 100340950 C T AGL Nonsense_Mutation p.R408* 0.28 TCGA-55-8506-01 1 101005566 101005566 C T GPR88 Silent p.R348R 0.29 TCGA-55-8506-01 1 103400654 103400654 G T COL11A1 Missense_Mutation p.P1152T 0.17 unknown(0) TCGA-55-8506-01 1 108023382 108023382 C A NTNG1 Missense_Mutation p.Q514K 0.21 tolerated(0.64) benign(0.066) TCGA-55-8506-01 1 109869660 109869660 T C SORT1 Missense_Mutation p.I533V 0.31 deleterious(0.03) benign(0.08) TCGA-55-8506-01 1 11009696 11009696 G A C1orf127 Silent p.S425S 0.18 TCGA-55-8506-01 1 110734625 110734625 G A SLC6A17 Missense_Mutation p.R299Q 0.19 tolerated(0.06) probably_damaging(0.974) TCGA-55-8506-01 1 110740798 110740798 G C SLC6A17 Missense_Mutation p.R639P 0.46 deleterious(0) probably_damaging(0.986) TCGA-55-8506-01 1 111060310 111060310 G T KCNA10 Missense_Mutation p.T367K 0.24 deleterious(0) probably_damaging(1) TCGA-55-8506-01 1 11333496 11333496 G T UBIAD1 5'UTR 0.21 TCGA-55-8506-01 1 11333970 11333970 C T UBIAD1 Missense_Mutation p.P128S 0.29 tolerated(0.08) possibly_damaging(0.673) TCGA-55-8506-01 1 114193781 114193781 G T MAGI3 Missense_Mutation p.R798L 0.27 deleterious(0) probably_damaging(1) TCGA-55-8506-01 1 114215273 114215273 C A MAGI3 Silent p.S985S 0.26 TCGA-55-8506-01 1 11586708 11586708 G C PTCHD2 Missense_Mutation p.V872L 0.28 deleterious_low_confidence(0.04) benign(0.247) TCGA-55-8506-01 1 11589658 11589658 C T PTCHD2 Silent p.R948R 0.29 TCGA-55-8506-01 1 117146567 117146567 G A IGSF3 Missense_Mutation p.R455C 0.41 deleterious(0.05) probably_damaging(0.985) TCGA-55-8506-01 1 11918483 11918483 A G NPPB Missense_Mutation p.V59A 0.38 tolerated(1) benign(0) TCGA-55-8506-01 1 120307036 120307036 G A HMGCS2 Silent p.C106C 0.35 TCGA-55-8506-01 1 120502050 120502050 T C NOTCH2 Missense_Mutation p.N664S 0.29 deleterious(0.03) benign(0.036) TCGA-55-8506-01 1 1248219 1248219 A G CPSF3L Silent p.H420H 0.23 TCGA-55-8506-01 1 1255874 1255874 G A CPSF3L Silent p.N60N 0.18 TCGA-55-8506-01 1 1267222 1267222 G A TAS1R3 Silent p.T132T 0.12 TCGA-55-8506-01 1 1290110 1290110 G - MXRA8 Frame_Shift_Del p.R301Gfs*107 0.36 TCGA-55-8506-01 1 12939821 12939821 G T PRAMEF4 Silent p.T327T 0.14 TCGA-55-8506-01 1 145116041 145116041 G T SEC22B RNA 0.17 TCGA-55-8506-01 1 145578385 145578385 C - PIAS3 Frame_Shift_Del p.P118Lfs*12 0.09 TCGA-55-8506-01 1 148932865 148932865 G T RP11-14N7.2 RNA 0.04 TCGA-55-8506-01 1 149905761 149905761 T A MTMR11 Missense_Mutation p.Q253L 0.23 deleterious(0.02) possibly_damaging(0.622) TCGA-55-8506-01 1 150527964 150527964 C T ADAMTSL4 Missense_Mutation p.R432C 0.30 deleterious(0) probably_damaging(0.953) TCGA-55-8506-01 1 150598102 150598102 G A ENSA Intron 0.17 TCGA-55-8506-01 1 150689667 150689667 G A HORMAD1 Missense_Mutation p.T42M 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 1 150778662 150778663 - T CTSK Frame_Shift_Ins p.N53Kfs*9 0.13 TCGA-55-8506-01 1 151107298 151107298 C T SEMA6C Missense_Mutation p.C545Y 0.08 deleterious(0) possibly_damaging(0.588) TCGA-55-8506-01 1 151504914 151504914 C T CGN Nonsense_Mutation p.Q870* 0.21 TCGA-55-8506-01 1 152082760 152082760 G C TCHH Missense_Mutation p.P978R 0.21 unknown(0) TCGA-55-8506-01 1 152129369 152129369 A T RPTN Missense_Mutation p.I69N 0.37 deleterious(0) benign(0.392) TCGA-55-8506-01 1 152187486 152187486 G A HRNR Missense_Mutation p.R2207C 0.04 unknown(0) TCGA-55-8506-01 1 152187488 152187488 C A HRNR Missense_Mutation p.G2206V 0.04 unknown(0) TCGA-55-8506-01 1 152278260 152278260 G T FLG Missense_Mutation p.H3034Q 0.10 benign(0.001) TCGA-55-8506-01 1 152282658 152282658 G T FLG Silent p.A1568A 0.31 TCGA-55-8506-01 1 152286884 152286885 - T FLG Frame_Shift_Ins p.E160Rfs*10 0.21 TCGA-55-8506-01 1 152323007 152323007 A T FLG2 3'UTR 0.37 TCGA-55-8506-01 1 152800158 152800158 C A LCE1A Missense_Mutation p.S70R 0.30 deleterious_low_confidence(0) unknown(0) TCGA-55-8506-01 1 153788828 153788828 G A GATAD2B Silent p.F379F 0.30 TCGA-55-8506-01 1 153916547 153916547 G - DENND4B Frame_Shift_Del p.L102Sfs*197 0.24 TCGA-55-8506-01 1 153934720 153934720 C A SLC39A1 Missense_Mutation p.E98D 0.22 tolerated(0.45) benign(0.079) TCGA-55-8506-01 1 154246391 154246391 C - HAX1 Frame_Shift_Del p.Q155Nfs*59 0.15 TCGA-55-8506-01 1 154303373 154303373 A T ATP8B2 Missense_Mutation p.N91I 0.19 deleterious(0) probably_damaging(0.997) TCGA-55-8506-01 1 154543958 154543958 C T CHRNB2 Missense_Mutation p.T220M 0.07 tolerated(0.07) probably_damaging(0.969) TCGA-55-8506-01 1 154936388 154936388 C T SHC1 Missense_Mutation p.R549H 0.12 deleterious(0.01) benign(0.005) TCGA-55-8506-01 1 154942566 154942566 C T SHC1 Missense_Mutation p.R146Q 0.06 tolerated(0.39) benign(0.09) TCGA-55-8506-01 1 155020385 155020385 G A DCST1 Missense_Mutation p.A579T 0.07 tolerated(0.06) possibly_damaging(0.7) TCGA-55-8506-01 1 155171881 155171881 G C THBS3 Intron 0.06 TCGA-55-8506-01 1 155252485 155252485 C A HCN3 Missense_Mutation p.L188I 0.13 deleterious(0.04) benign(0.115) TCGA-55-8506-01 1 155265004 155265004 G A PKLR Silent p.T199T 0.09 TCGA-55-8506-01 1 155317646 155317646 C T ASH1L Missense_Mutation p.R2535Q 0.11 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-55-8506-01 1 155450126 155450126 C A ASH1L Missense_Mutation p.R845S 0.18 tolerated_low_confidence(0.12) probably_damaging(0.995) TCGA-55-8506-01 1 155722173 155722173 C A GON4L Missense_Mutation p.R2016S 0.27 tolerated_low_confidence(0.46) benign(0.003) TCGA-55-8506-01 1 156012669 156012669 G A UBQLN4 Nonsense_Mutation p.Q388* 0.19 TCGA-55-8506-01 1 156256256 156256256 C T TMEM79 Silent p.A321A 0.12 TCGA-55-8506-01 1 156261411 156261411 G T TMEM79 3'UTR 0.17 TCGA-55-8506-01 1 156351713 156351713 G C RHBG Silent p.T319T 0.18 TCGA-55-8506-01 1 156713553 156713553 C A HDGF Nonsense_Mutation p.E219* 0.15 TCGA-55-8506-01 1 156811944 156811944 G A INSRR Silent p.R1119R 0.09 TCGA-55-8506-01 1 156823735 156823735 T C INSRR Missense_Mutation p.H149R 0.64 deleterious(0) probably_damaging(0.967) TCGA-55-8506-01 1 156841429 156841429 G A NTRK1 Silent p.L244L 0.15 TCGA-55-8506-01 1 156911756 156911756 C A ARHGEF11 Missense_Mutation p.V1118L 0.21 deleterious(0.01) possibly_damaging(0.586) TCGA-55-8506-01 1 157665995 157665995 G T FCRL3 Missense_Mutation p.H323N 0.56 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 1 157771735 157771735 G T FCRL1 Missense_Mutation p.R286S 0.60 tolerated(0.06) benign(0.341) TCGA-55-8506-01 1 158059420 158059420 T C KIRREL Splice_Site p.X391_splice 0.05 TCGA-55-8506-01 1 158369201 158369201 G C OR10T2 Missense_Mutation p.S19C 0.12 deleterious(0) probably_damaging(0.976) TCGA-55-8506-01 1 158517517 158517517 G T OR6Y1 Missense_Mutation p.R127S 0.18 deleterious(0) probably_damaging(0.932) TCGA-55-8506-01 1 158549397 158549397 A T OR10X1 Missense_Mutation p.L98Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 1 158549524 158549524 C G OR10X1 Missense_Mutation p.A56P 0.18 deleterious(0.03) possibly_damaging(0.451) TCGA-55-8506-01 1 158585167 158585167 C T SPTA1 Missense_Mutation p.M2209I 0.29 tolerated(0.06) possibly_damaging(0.683) TCGA-55-8506-01 1 158596004 158596004 C G SPTA1 Missense_Mutation p.E1948Q 0.16 deleterious(0) probably_damaging(1) TCGA-55-8506-01 1 158613176 158613176 G T SPTA1 Missense_Mutation p.L1460I 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-55-8506-01 1 158614143 158614143 G A SPTA1 Missense_Mutation p.A1413V 0.21 tolerated(0.08) benign(0.05) TCGA-55-8506-01 1 158653227 158653227 C A SPTA1 Missense_Mutation p.M108I 0.24 tolerated(1) benign(0.001) TCGA-55-8506-01 1 159035755 159035755 G A AIM2 Missense_Mutation p.T254M 0.26 tolerated(0.08) benign(0.025) TCGA-55-8506-01 1 159174709 159174709 G A DARC 5'Flank 0.12 TCGA-55-8506-01 1 159272168 159272168 T A FCER1A Missense_Mutation p.M5K 0.23 deleterious(0.01) benign(0.143) TCGA-55-8506-01 1 159683599 159683599 C T CRP Missense_Mutation p.G131R 0.58 deleterious(0.01) probably_damaging(0.98) TCGA-55-8506-01 1 159922172 159922172 C A SLAMF9 Missense_Mutation p.G182C 0.14 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 1 160097563 160097563 G A ATP1A2 Missense_Mutation p.G324S 0.11 deleterious(0.03) probably_damaging(0.975) TCGA-55-8506-01 1 161166039 161166039 C G ADAMTS4 Missense_Mutation p.V338L 0.13 deleterious(0.01) possibly_damaging(0.901) TCGA-55-8506-01 1 161723052 161723052 G A DUSP12 Splice_Site p.X287_splice 0.08 TCGA-55-8506-01 1 162381712 162381712 T G SH2D1B Missense_Mutation p.D32A 0.23 deleterious(0) possibly_damaging(0.887) TCGA-55-8506-01 1 16255019 16255019 C T SPEN Missense_Mutation p.R762W 0.28 probably_damaging(0.997) TCGA-55-8506-01 1 16461536 16461536 G A EPHA2 Missense_Mutation p.T526M 0.10 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 1 165324790 165324790 C A LMX1A Missense_Mutation p.D3Y 0.29 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-55-8506-01 1 165324791 165324791 C A LMX1A Silent p.L2L 0.30 TCGA-55-8506-01 1 165370439 165370439 G - RXRG 3'UTR 0.18 TCGA-55-8506-01 1 165513699 165513699 C G LRRC52 Missense_Mutation p.R56G 0.20 deleterious(0) probably_damaging(0.998) TCGA-55-8506-01 1 166833074 166833074 C T TADA1 Missense_Mutation p.R106H 0.08 deleterious(0.01) probably_damaging(0.911) TCGA-55-8506-01 1 166904558 166904558 G T ILDR2 Missense_Mutation p.S287Y 0.25 deleterious(0.01) possibly_damaging(0.877) TCGA-55-8506-01 1 166927338 166927338 G T ILDR2 Missense_Mutation p.A16D 0.17 deleterious(0.01) possibly_damaging(0.588) TCGA-55-8506-01 1 167083024 167083024 A T DUSP27 Missense_Mutation p.K63I 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 1 167096810 167096810 C G DUSP27 Missense_Mutation p.S814R 0.15 tolerated(0.12) possibly_damaging(0.58) TCGA-55-8506-01 1 167368544 167368544 G T POU2F1 Missense_Mutation p.S464I 0.23 deleterious(0) unknown(0) TCGA-55-8506-01 1 167370762 167370762 C T POU2F1 Silent p.T508T 0.26 TCGA-55-8506-01 1 167863109 167863109 C A ADCY10 Missense_Mutation p.M270I 0.30 deleterious(0) possibly_damaging(0.777) TCGA-55-8506-01 1 168065871 168065871 C A GPR161 Missense_Mutation p.G345V 0.20 tolerated(0.09) probably_damaging(0.998) TCGA-55-8506-01 1 168683484 168683484 T A DPT Missense_Mutation p.S136C 0.21 deleterious(0.02) probably_damaging(0.938) TCGA-55-8506-01 1 171227350 171227350 A T FMO1 Nonsense_Mutation p.R42* 0.20 TCGA-55-8506-01 1 171753568 171753568 G T METTL13 Missense_Mutation p.R281L 0.57 deleterious(0) probably_damaging(0.992) TCGA-55-8506-01 1 17249172 17249172 C T CROCC Silent p.S25S 0.14 TCGA-55-8506-01 1 172520659 172520659 A T SUCO Missense_Mutation p.S24C 0.23 tolerated_low_confidence(0.05) possibly_damaging(0.88) TCGA-55-8506-01 1 17256926 17256926 G T CROCC Missense_Mutation p.S229I 0.17 probably_damaging(0.996) TCGA-55-8506-01 1 17257835 17257835 G T CROCC Missense_Mutation p.W300L 0.15 probably_damaging(1) TCGA-55-8506-01 1 17274885 17274885 G C CROCC Missense_Mutation p.Q858H 0.26 benign(0.049) TCGA-55-8506-01 1 17322923 17322923 A G ATP13A2 Missense_Mutation p.Y422H 0.12 deleterious(0.04) benign(0.424) TCGA-55-8506-01 1 175048541 175048541 G T TNN Missense_Mutation p.R161M 0.30 deleterious(0) benign(0.011) TCGA-55-8506-01 1 175067502 175067502 G A TNN Silent p.R630R 0.05 TCGA-55-8506-01 1 175324641 175324642 - G TNR Frame_Shift_Ins p.K1083Qfs*87 0.15 TCGA-55-8506-01 1 175375631 175375631 G T TNR Missense_Mutation p.P74T 0.21 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 1 175375860 175375860 C A TNR 5'UTR 0.23 TCGA-55-8506-01 1 17550870 17550870 C A PADI1 Missense_Mutation p.L119I 0.40 deleterious(0) probably_damaging(0.948) TCGA-55-8506-01 1 175996759 175996759 A G RFWD2 Missense_Mutation p.C560R 0.18 deleterious(0) probably_damaging(0.998) TCGA-55-8506-01 1 176012383 176012383 C A RFWD2 Missense_Mutation p.W517C 0.16 deleterious(0) probably_damaging(1) TCGA-55-8506-01 1 176668537 176668537 G T PAPPA2 Missense_Mutation p.K1016N 0.17 deleterious(0.01) possibly_damaging(0.556) TCGA-55-8506-01 1 176708813 176708813 A G PAPPA2 Missense_Mutation p.T1284A 0.18 tolerated(0.29) benign(0.014) TCGA-55-8506-01 1 176738906 176738906 C A PAPPA2 Missense_Mutation p.P1496Q 0.17 deleterious(0) probably_damaging(1) TCGA-55-8506-01 1 176762729 176762729 C A PAPPA2 Missense_Mutation p.P1685H 0.09 tolerated(0.27) possibly_damaging(0.764) TCGA-55-8506-01 1 176762730 176762730 C G PAPPA2 Silent p.P1685P 0.09 TCGA-55-8506-01 1 17682574 17682574 G T PADI4 Silent p.V469V 0.27 TCGA-55-8506-01 1 176998513 176998513 C G ASTN1 Intron 0.25 TCGA-55-8506-01 1 177133772 177133772 C A ASTN1 Missense_Mutation p.W14L 0.35 tolerated_low_confidence(0.2) unknown(0) TCGA-55-8506-01 1 177199078 177199078 G T BRINP2 Silent p.L22L 0.23 TCGA-55-8506-01 1 179414139 179414139 A G AXDND1 Missense_Mutation p.D533G 0.23 deleterious(0) benign(0.379) TCGA-55-8506-01 1 179659964 179659964 G T TDRD5 Missense_Mutation p.Q998H 0.24 deleterious(0.01) possibly_damaging(0.749) TCGA-55-8506-01 1 179783255 179783255 C - FAM163A Frame_Shift_Del p.P146Rfs*2 0.18 TCGA-55-8506-01 1 179989822 179989822 C T CEP350 Silent p.A971A 0.22 TCGA-55-8506-01 1 181687190 181687190 G C CACNA1E Splice_Site p.X509_splice 0.21 TCGA-55-8506-01 1 181727100 181727100 C T CACNA1E Silent p.F1449F 0.10 TCGA-55-8506-01 1 181754913 181754913 C T CACNA1E Missense_Mutation p.A1915V 0.10 tolerated(0.27) benign(0.011) TCGA-55-8506-01 1 182783956 182783956 T A NPL Silent p.A109A 0.34 TCGA-55-8506-01 1 183559576 183559576 T C NCF2 5'UTR 0.16 TCGA-55-8506-01 1 183933230 183933230 G C COLGALT2 Intron 0.20 TCGA-55-8506-01 1 184446685 184446685 T C C1orf21 Silent p.N14N 0.09 TCGA-55-8506-01 1 184723649 184723649 C A EDEM3 Missense_Mutation p.M44I 0.14 tolerated(0.07) benign(0.027) TCGA-55-8506-01 1 184764687 184764687 C T FAM129A Silent p.E737E 0.11 TCGA-55-8506-01 1 186135399 186135399 G A HMCN1 Missense_Mutation p.G5135S 0.27 benign(0.091) TCGA-55-8506-01 1 19166999 19166999 G T TAS1R2 Nonsense_Mutation p.C538* 0.35 TCGA-55-8506-01 1 192129557 192129557 C T RGS18 Missense_Mutation p.L91F 0.11 deleterious(0) probably_damaging(0.998) TCGA-55-8506-01 1 1961533 1961533 T A GABRD Missense_Mutation p.Y391N 0.26 tolerated(0.15) possibly_damaging(0.588) TCGA-55-8506-01 1 19630866 19630866 G A AKR7A2 Silent p.D311D 0.15 TCGA-55-8506-01 1 196397357 196397357 C G KCNT2 Missense_Mutation p.G288R 0.14 deleterious(0) probably_damaging(0.998) TCGA-55-8506-01 1 196438127 196438127 G T KCNT2 Silent p.I152I 0.50 TCGA-55-8506-01 1 196684897 196684897 A G CFH Missense_Mutation p.Y565C 0.19 deleterious(0) probably_damaging(0.962) TCGA-55-8506-01 1 197396875 197396875 T C CRB1 Missense_Mutation p.L807P 0.23 deleterious(0) probably_damaging(1) TCGA-55-8506-01 1 200014583 200014583 C A NR5A2 Silent p.R112R 0.13 TCGA-55-8506-01 1 201195197 201195197 G A IGFN1 Missense_Mutation p.G3578R 0.26 probably_damaging(1) TCGA-55-8506-01 1 201681992 201681992 C T NAV1 Missense_Mutation p.R269W 0.07 deleterious(0) probably_damaging(1) TCGA-55-8506-01 1 202097689 202097689 C A GPR37L1 3'UTR 0.30 TCGA-55-8506-01 1 20249184 20249184 G T PLA2G2E Silent p.S35S 0.25 TCGA-55-8506-01 1 203015020 203015020 C T PPFIA4 Missense_Mutation p.R11C 0.10 deleterious(0) probably_damaging(0.987) TCGA-55-8506-01 1 203134576 203134576 A G ADORA1 Missense_Mutation p.M177V 0.11 deleterious(0.01) possibly_damaging(0.856) TCGA-55-8506-01 1 203743258 203743258 C G LAX1 Missense_Mutation p.L216V 0.10 tolerated(0.32) benign(0.001) TCGA-55-8506-01 1 203743277 203743277 C A LAX1 Missense_Mutation p.T222N 0.33 deleterious(0.02) benign(0.023) TCGA-55-8506-01 1 203743669 203743669 C T LAX1 Nonsense_Mutation p.Q353* 0.26 TCGA-55-8506-01 1 204198183 204198183 G T PLEKHA6 Missense_Mutation p.A878E 0.25 deleterious(0) possibly_damaging(0.691) TCGA-55-8506-01 1 204226816 204226816 G A PLEKHA6 Missense_Mutation p.R397C 0.35 deleterious(0) probably_damaging(0.985) TCGA-55-8506-01 1 204234148 204234148 C A PLEKHA6 Silent p.L101L 0.24 TCGA-55-8506-01 1 204415187 204415187 T A PIK3C2B Missense_Mutation p.S859C 0.29 deleterious(0) probably_damaging(0.954) TCGA-55-8506-01 1 204587571 204587571 G T LRRN2 Missense_Mutation p.A517D 0.22 tolerated(0.16) benign(0.101) TCGA-55-8506-01 1 204926840 204926840 T C NFASC Missense_Mutation p.Y198H 0.26 deleterious(0) probably_damaging(1) TCGA-55-8506-01 1 204939850 204939850 G C NFASC Missense_Mutation p.W370C 0.32 deleterious(0) probably_damaging(1) TCGA-55-8506-01 1 205132893 205132893 A G DSTYK Silent p.S505S 0.26 TCGA-55-8506-01 1 205495240 205495240 C T CDK18 Silent p.N198N 0.25 TCGA-55-8506-01 1 205883897 205883897 C T SLC26A9 3'UTR 0.17 TCGA-55-8506-01 1 206944290 206944290 C - IL10 Frame_Shift_Del p.E114Rfs*3 0.16 TCGA-55-8506-01 1 207195689 207195689 G T C1orf116 Missense_Mutation p.L474M 0.33 deleterious(0.01) probably_damaging(0.991) TCGA-55-8506-01 1 207240992 207240992 G A PFKFB2 Missense_Mutation p.E261K 0.12 benign(0.003) TCGA-55-8506-01 1 20987921 20987921 C T DDOST 5'UTR 0.36 TCGA-55-8506-01 1 211452578 211452578 A T RCOR3 Splice_Site p.X214_splice 0.28 TCGA-55-8506-01 1 2121096 2121096 G A C1orf86 3'UTR 0.32 TCGA-55-8506-01 1 212798307 212798307 C T FAM71A Nonsense_Mutation p.R30* 0.09 TCGA-55-8506-01 1 212860079 212860079 C A BATF3 3'UTR 0.24 TCGA-55-8506-01 1 214170682 214170682 T A PROX1 Missense_Mutation p.N268K 0.07 tolerated(0.44) benign(0.171) TCGA-55-8506-01 1 215256769 215256769 C A KCNK2 Missense_Mutation p.A14E 0.21 tolerated_low_confidence(0.57) benign(0.003) TCGA-55-8506-01 1 215259847 215259847 G T KCNK2 Silent p.T61T 0.21 TCGA-55-8506-01 1 215848285 215848285 A C USH2A Missense_Mutation p.L4323R 0.06 probably_damaging(0.999) TCGA-55-8506-01 1 217793634 217793634 T C GPATCH2 Silent p.L88L 0.14 TCGA-55-8506-01 1 220253150 220253150 G T BPNT1 Silent p.A13A 0.10 TCGA-55-8506-01 1 22148686 22148686 C A LDLRAD2 Intron 0.37 TCGA-55-8506-01 1 22178156 22178156 G A HSPG2 Silent p.P2347P 0.25 TCGA-55-8506-01 1 222732098 222732098 C T TAF1A Silent p.R419R 0.19 TCGA-55-8506-01 1 223156421 223156421 G T DISP1 Splice_Site p.X170_splice 0.09 TCGA-55-8506-01 1 22336325 22336325 C A CELA3A Missense_Mutation p.S257Y 0.22 deleterious(0) probably_damaging(1) TCGA-55-8506-01 1 226027005 226027005 G T EPHX1 Missense_Mutation p.W227L 0.30 deleterious(0.01) probably_damaging(0.982) TCGA-55-8506-01 1 226075329 226075329 G T RP4-559A3.7 Missense_Mutation p.R278S 0.15 unknown(0) TCGA-55-8506-01 1 227170666 227170666 C T ADCK3 Silent p.A337A 0.29 TCGA-55-8506-01 1 227921063 227921063 C G SNAP47 5'Flank 0.32 TCGA-55-8506-01 1 228468281 228468281 C T OBSCN Missense_Mutation p.R3090C 0.12 benign(0.229) TCGA-55-8506-01 1 228474665 228474665 G T OBSCN Missense_Mutation p.A3586S 0.13 possibly_damaging(0.462) TCGA-55-8506-01 1 22848956 22848956 G T ZBTB40 Missense_Mutation p.G1100W 0.22 deleterious(0) benign(0.03) TCGA-55-8506-01 1 228596424 228596424 C T TRIM17 Silent p.A304A 0.06 TCGA-55-8506-01 1 228612632 228612632 C T HIST3H3 Missense_Mutation p.R132H 0.09 tolerated_low_confidence(0.08) benign(0.017) TCGA-55-8506-01 1 230313996 230313996 G C GALNT2 Missense_Mutation p.K53N 0.35 tolerated(0.23) benign(0.022) TCGA-55-8506-01 1 230381893 230381893 G T GALNT2 Missense_Mutation p.G272C 0.08 deleterious(0) probably_damaging(1) TCGA-55-8506-01 1 2303979 2303979 T C MORN1 Missense_Mutation p.Q229R 0.08 tolerated(0.08) benign(0.049) TCGA-55-8506-01 1 230841871 230841871 G T AGT Missense_Mutation p.P311H 0.10 deleterious(0.02) possibly_damaging(0.595) TCGA-55-8506-01 1 233507978 233507978 G T MLK4 Intron 0.22 TCGA-55-8506-01 1 234565839 234565839 C A TARBP1 Missense_Mutation p.C868F 0.47 tolerated(0.71) benign(0.015) TCGA-55-8506-01 1 234744255 234744255 G A IRF2BP2 Missense_Mutation p.P329L 0.68 tolerated(0.4) probably_damaging(0.982) TCGA-55-8506-01 1 235617570 235617570 C T B3GALNT2 Silent p.P403P 0.09 TCGA-55-8506-01 1 235866047 235866047 C G LYST Silent p.P3458P 0.23 TCGA-55-8506-01 1 236145007 236145007 C A NID1 Missense_Mutation p.R1044L 0.22 deleterious(0) possibly_damaging(0.835) TCGA-55-8506-01 1 236647405 236647405 A C EDARADD 3'Flank 0.22 TCGA-55-8506-01 1 236850094 236850094 A G ACTN2 Missense_Mutation p.R41G 0.22 deleterious(0) possibly_damaging(0.557) TCGA-55-8506-01 1 236850097 236850097 A G ACTN2 Missense_Mutation p.K42E 0.23 deleterious(0.01) benign(0.004) TCGA-55-8506-01 1 23689527 23689527 G T ZNF436 Missense_Mutation p.S116R 0.28 tolerated(0.46) benign(0.002) TCGA-55-8506-01 1 236902635 236902635 C A ACTN2 Missense_Mutation p.L304M 0.16 deleterious(0.01) probably_damaging(0.99) TCGA-55-8506-01 1 236918378 236918378 G A ACTN2 Silent p.L678L 0.24 TCGA-55-8506-01 1 237586416 237586416 G T RYR2 Missense_Mutation p.W291C 0.19 probably_damaging(0.993) TCGA-55-8506-01 1 23761031 23761031 C A ASAP3 Missense_Mutation p.Q610H 0.15 deleterious(0.03) benign(0.278) TCGA-55-8506-01 1 237732593 237732593 C A RYR2 Missense_Mutation p.A1191D 0.21 probably_damaging(0.993) TCGA-55-8506-01 1 237780625 237780625 C G RYR2 Missense_Mutation p.R1919G 0.27 probably_damaging(0.926) TCGA-55-8506-01 1 237868518 237868518 G T RYR2 Missense_Mutation p.R3152L 0.35 benign(0.146) TCGA-55-8506-01 1 240071054 240071054 G T CHRM3 Silent p.T101T 0.22 TCGA-55-8506-01 1 240969627 240969627 C A RGS7 Splice_Site p.X361_splice 0.26 TCGA-55-8506-01 1 240975218 240975218 C A RGS7 Missense_Mutation p.R361I 0.20 deleterious(0) probably_damaging(0.998) TCGA-55-8506-01 1 240979664 240979664 G T RGS7 Missense_Mutation p.P246T 0.19 deleterious(0.03) benign(0.435) TCGA-55-8506-01 1 241920756 241920756 A G WDR64 Missense_Mutation p.T638A 0.20 tolerated(0.81) benign(0) TCGA-55-8506-01 1 242264057 242264057 C A PLD5 Missense_Mutation p.A423S 0.18 tolerated_low_confidence(0.12) benign(0.305) TCGA-55-8506-01 1 2430189 2430189 G T PLCH2 Missense_Mutation p.D759Y 0.37 deleterious(0) probably_damaging(0.997) TCGA-55-8506-01 1 244595876 244595877 - T ADSS Frame_Shift_Ins p.R126Kfs*6 0.18 TCGA-55-8506-01 1 245025941 245025941 A G HNRNPU Silent p.I261I 0.11 TCGA-55-8506-01 1 2452731 2452731 C A PANK4 Silent p.P77P 0.20 TCGA-55-8506-01 1 246704449 246704449 C A TFB2M Missense_Mutation p.D359Y 0.26 tolerated(0.05) possibly_damaging(0.876) TCGA-55-8506-01 1 247151520 247151520 C T ZNF695 Silent p.E99E 0.10 TCGA-55-8506-01 1 247592996 247592996 C A NLRP3 Missense_Mutation p.P756T 0.21 tolerated(0.74) benign(0.006) TCGA-55-8506-01 1 247654640 247654640 C T OR2W5 RNA 0.22 TCGA-55-8506-01 1 24771674 24771674 G T NIPAL3 Splice_Site p.X112_splice 0.27 TCGA-55-8506-01 1 247920907 247920907 G C OR1C1 Missense_Mutation p.P268A 0.20 tolerated(1) benign(0.297) TCGA-55-8506-01 1 248343685 248343685 C T OR2M2 Missense_Mutation p.T133I 0.21 deleterious(0.01) benign(0.022) TCGA-55-8506-01 1 248343686 248343686 C A OR2M2 Silent p.T133T 0.21 TCGA-55-8506-01 1 248343921 248343921 G T OR2M2 Missense_Mutation p.A212S 0.23 tolerated(1) benign(0.091) TCGA-55-8506-01 1 248402868 248402868 T A OR2M4 Missense_Mutation p.V213D 0.34 deleterious(0) probably_damaging(0.932) TCGA-55-8506-01 1 248437033 248437033 C A OR2T33 Missense_Mutation p.M28I 0.21 tolerated(0.29) benign(0.001) TCGA-55-8506-01 1 248738019 248738019 T G OR2T34 Missense_Mutation p.S14R 0.13 tolerated(0.2) benign(0.006) TCGA-55-8506-01 1 248738035 248738035 A T OR2T34 Silent p.S8S 0.17 TCGA-55-8506-01 1 248845498 248845498 C T OR14I1 Silent p.V36V 0.06 TCGA-55-8506-01 1 2525344 2525344 G T MMEL1 Silent p.P592P 0.31 TCGA-55-8506-01 1 26349469 26349469 A G EXTL1 Missense_Mutation p.H111R 0.14 deleterious(0.03) benign(0.056) TCGA-55-8506-01 1 27223872 27223872 C T GPATCH3 Missense_Mutation p.A266T 0.32 tolerated(0.62) benign(0) TCGA-55-8506-01 1 27278351 27278351 T C C1orf172 Missense_Mutation p.Y174C 0.25 tolerated(0.17) benign(0.004) TCGA-55-8506-01 1 27878268 27878268 G A AHDC1 Missense_Mutation p.P120L 0.31 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-55-8506-01 1 28203187 28203187 C A THEMIS2 Silent p.V61V 0.32 TCGA-55-8506-01 1 28208808 28208808 C T THEMIS2 Missense_Mutation p.R325W 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 1 29475146 29475146 C A SRSF4 Nonsense_Mutation p.E421* 0.30 TCGA-55-8506-01 1 29638197 29638197 G A PTPRU Missense_Mutation p.G1010R 0.28 tolerated(0.09) probably_damaging(1) TCGA-55-8506-01 1 32049135 32049135 A G TINAGL1 Missense_Mutation p.I181V 0.16 tolerated(0.13) benign(0) TCGA-55-8506-01 1 33330183 33330183 C T FNDC5 Intron 0.17 TCGA-55-8506-01 1 33646644 33646644 G A TRIM62 Silent p.D130D 0.45 TCGA-55-8506-01 1 36354045 36354045 C - AGO1 Frame_Shift_Del p.L17Cfs*99 0.34 TCGA-55-8506-01 1 3638723 3638723 G T TP73 Missense_Mutation p.V190F 0.33 deleterious(0) possibly_damaging(0.59) TCGA-55-8506-01 1 3662277 3662277 A G TP73-AS1 RNA 0.15 TCGA-55-8506-01 1 38034692 38034692 G A GNL2 Missense_Mutation p.S543F 0.28 tolerated(0.11) benign(0.013) TCGA-55-8506-01 1 3807190 3807190 G T C1orf174 Missense_Mutation p.D187E 0.24 tolerated(0.77) benign(0.325) TCGA-55-8506-01 1 38079496 38079496 G T RSPO1 Silent p.R169R 0.18 TCGA-55-8506-01 1 39878133 39878133 G T KIAA0754 Missense_Mutation p.E596D 0.30 benign(0.388) TCGA-55-8506-01 1 40432551 40432551 G A MFSD2A Missense_Mutation p.G305S 0.12 tolerated(0.15) probably_damaging(0.982) TCGA-55-8506-01 1 40713882 40713882 C T TMCO2 Nonsense_Mutation p.R73* 0.26 TCGA-55-8506-01 1 41284300 41284300 G A KCNQ4 Missense_Mutation p.R219H 0.22 deleterious(0) probably_damaging(1) TCGA-55-8506-01 1 43220835 43220835 C A LEPRE1 Splice_Site p.X408_splice 0.25 TCGA-55-8506-01 1 43233248 43233248 G A C1orf50 Missense_Mutation p.A50T 0.33 tolerated(0.63) benign(0.079) TCGA-55-8506-01 1 44137428 44137428 C T KDM4A Missense_Mutation p.T539M 0.35 deleterious(0.05) benign(0.353) TCGA-55-8506-01 1 44303888 44303888 T C ST3GAL3 Intron 0.08 TCGA-55-8506-01 1 44415552 44415552 C T IPO13 Missense_Mutation p.P183L 0.30 tolerated(0.29) benign(0.029) TCGA-55-8506-01 1 44450677 44450677 C T B4GALT2 Silent p.C259C 0.09 TCGA-55-8506-01 1 45821111 45821111 G T TESK2 Missense_Mutation p.S135Y 0.26 deleterious(0.01) benign(0.014) TCGA-55-8506-01 1 46972783 46972783 C - DMBX1 Frame_Shift_Del p.D36Tfs*59 0.28 TCGA-55-8506-01 1 47124383 47124383 C T ATPAF1 Silent p.V157V 0.11 TCGA-55-8506-01 1 53262032 53262032 C T ZYG11B Missense_Mutation p.A468V 0.18 tolerated(0.11) benign(0.009) TCGA-55-8506-01 1 53544151 53544151 C T PODN Silent p.S371S 0.15 TCGA-55-8506-01 1 54262697 54262697 C A NDC1 Missense_Mutation p.G448V 0.30 tolerated(0.14) possibly_damaging(0.776) TCGA-55-8506-01 1 54266523 54266523 T A NDC1 Splice_Site p.X356_splice 0.15 TCGA-55-8506-01 1 57481070 57481070 G T DAB1 Missense_Mutation p.F310L 0.10 tolerated(0.66) benign(0.013) TCGA-55-8506-01 1 6147535 6147535 G T KCNAB2 Missense_Mutation p.S145I 0.32 deleterious(0) possibly_damaging(0.895) TCGA-55-8506-01 1 6158655 6158655 C A KCNAB2 3'UTR 0.27 TCGA-55-8506-01 1 6246782 6246782 G A RPL22 Missense_Mutation p.R113C 0.24 tolerated(0.09) benign(0.094) TCGA-55-8506-01 1 62734032 62734032 T C KANK4 Missense_Mutation p.I720V 0.17 tolerated(0.97) benign(0) TCGA-55-8506-01 1 62941827 62941827 C A DOCK7 Nonsense_Mutation p.G1848* 0.39 TCGA-55-8506-01 1 63018570 63018570 G A DOCK7 Missense_Mutation p.P867S 0.22 tolerated(0.44) benign(0.012) TCGA-55-8506-01 1 6304610 6304610 C A HES3 Silent p.I28I 0.49 TCGA-55-8506-01 1 64022857 64022857 T - EFCAB7 Frame_Shift_Del p.F431Lfs*3 0.17 TCGA-55-8506-01 1 6409878 6409878 C - ACOT7 Frame_Shift_Del p.T75Pfs*3 0.15 TCGA-55-8506-01 1 6520299 6520299 G T ESPN 3'UTR 0.22 TCGA-55-8506-01 1 65278497 65278497 A T RAVER2 Missense_Mutation p.N573I 0.06 deleterious(0) probably_damaging(0.909) TCGA-55-8506-01 1 66088638 66088638 T A LEPR Missense_Mutation p.W883R 0.30 deleterious(0) probably_damaging(0.997) TCGA-55-8506-01 1 70509749 70509749 T G LRRC7 Missense_Mutation p.F1323C 0.13 tolerated(0.07) probably_damaging(0.981) TCGA-55-8506-01 1 74507409 74507409 C G LRRIQ3 Silent p.R402R 0.20 TCGA-55-8506-01 1 75609599 75609599 G A LHX8 Missense_Mutation p.R227K 0.29 deleterious(0) probably_damaging(0.996) TCGA-55-8506-01 1 75609601 75609601 G T LHX8 Missense_Mutation p.A228S 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-55-8506-01 1 78193978 78193978 A G USP33 Splice_Site p.X410_splice 0.32 TCGA-55-8506-01 1 7846896 7846896 A T PER3 Silent p.T130T 0.17 TCGA-55-8506-01 1 78958405 78958405 T A PTGFR 5'UTR 0.15 TCGA-55-8506-01 1 79107205 79107205 C A IFI44L Missense_Mutation p.P412H 0.32 deleterious(0.02) possibly_damaging(0.474) TCGA-55-8506-01 1 8074322 8074322 A G ERRFI1 Missense_Mutation p.C113R 0.17 tolerated(0.08) benign(0.154) TCGA-55-8506-01 1 8075743 8075743 C T ERRFI1 5'UTR 0.35 TCGA-55-8506-01 1 84372018 84372018 T A TTLL7 Silent p.I707I 0.27 TCGA-55-8506-01 1 85403456 85403456 T C MCOLN2 Silent p.L439L 0.14 TCGA-55-8506-01 1 86482852 86482852 A C COL24A1 Silent p.S764S 0.25 TCGA-55-8506-01 1 86818661 86818661 C A ODF2L Nonsense_Mutation p.E592* 0.33 TCGA-55-8506-01 1 86904633 86904633 G T CLCA2 Silent p.V349V 0.26 TCGA-55-8506-01 1 89845994 89845994 G T GBP6 Missense_Mutation p.R225S 0.35 deleterious(0) probably_damaging(0.997) TCGA-55-8506-01 1 90180271 90180271 A T LRRC8C Silent p.T714T 0.29 TCGA-55-8506-01 1 91782016 91782016 C T HFM1 Missense_Mutation p.A944T 0.21 tolerated(0.14) benign(0.082) TCGA-55-8506-01 1 91979538 91979539 - T CDC7 Frame_Shift_Ins p.G288Wfs*14 0.12 TCGA-55-8506-01 1 99762379 99762379 G C LPPR4 Missense_Mutation p.G165A 0.26 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 20 1424316 1424316 C T NSFL1C 3'UTR 0.50 TCGA-55-8506-01 20 1460538 1460538 G A SIRPB2 Silent p.N86N 0.10 TCGA-55-8506-01 20 17602515 17602516 AG - RRBP1 Frame_Shift_Del p.S642Cfs*54 0.13 TCGA-55-8506-01 20 20030018 20030018 C G CRNKL1 Missense_Mutation p.A249P 0.47 deleterious(0) probably_damaging(0.998) TCGA-55-8506-01 20 20486180 20486180 T A RALGAPA2 Splice_Site p.X1643_splice 0.30 TCGA-55-8506-01 20 21492653 21492653 G A NKX2-2 Missense_Mutation p.H244Y 0.56 deleterious(0) possibly_damaging(0.543) TCGA-55-8506-01 20 21492969 21492969 C T NKX2-2 Silent p.A138A 0.14 TCGA-55-8506-01 20 2375966 2375966 G T TGM6 Missense_Mutation p.S103I 0.08 deleterious(0.01) probably_damaging(0.988) TCGA-55-8506-01 20 25491333 25491333 T C NINL Missense_Mutation p.Q165R 0.18 deleterious(0.01) benign(0.131) TCGA-55-8506-01 20 25656525 25656525 G A ZNF337 Nonsense_Mutation p.R467* 0.11 TCGA-55-8506-01 20 2779390 2779391 - G CPXM1 Frame_Shift_Ins p.A108Rfs*2 0.24 TCGA-55-8506-01 20 30365315 30365315 C T TPX2 Silent p.S252S 0.14 TCGA-55-8506-01 20 30538170 30538170 T A PDRG1 Missense_Mutation p.K36N 0.40 deleterious(0) probably_damaging(0.993) TCGA-55-8506-01 20 30584862 30584862 C - XKR7 Frame_Shift_Del p.Q449Rfs*255 0.30 TCGA-55-8506-01 20 31649631 31649631 G A BPIFB3 Silent p.P195P 0.08 TCGA-55-8506-01 20 33437796 33437796 G C GGT7 Missense_Mutation p.P598R 0.26 tolerated(0.17) possibly_damaging(0.879) TCGA-55-8506-01 20 33439059 33439059 G A GGT7 Missense_Mutation p.A567V 0.19 tolerated(0.13) benign(0.084) TCGA-55-8506-01 20 33590830 33590830 C T TRPC4AP 3'UTR 0.23 TCGA-55-8506-01 20 33591358 33591358 C T TRPC4AP Missense_Mutation p.R704Q 0.11 tolerated(0.71) benign(0.131) TCGA-55-8506-01 20 33665865 33665865 C A TRPC4AP Missense_Mutation p.C94F 0.24 tolerated(0.2) benign(0.367) TCGA-55-8506-01 20 33934981 33934981 C T UQCC1 Missense_Mutation p.G187S 0.14 tolerated(0.27) benign(0.055) TCGA-55-8506-01 20 34022221 34022221 C T GDF5 Missense_Mutation p.R331H 0.07 deleterious(0) benign(0.192) TCGA-55-8506-01 20 3553468 3553468 A C ATRN Missense_Mutation p.E654D 0.18 tolerated(0.19) benign(0.013) TCGA-55-8506-01 20 3653452 3653452 C T ADAM33 Silent p.P409P 0.21 TCGA-55-8506-01 20 36936038 36936038 G T BPI Missense_Mutation p.S71I 0.18 tolerated(0.08) benign(0.204) TCGA-55-8506-01 20 37153516 37153516 G T RALGAPB Missense_Mutation p.C572F 0.36 deleterious(0.05) probably_damaging(0.999) TCGA-55-8506-01 20 37400489 37400489 C T ACTR5 3'UTR 0.33 TCGA-55-8506-01 20 4202306 4202306 C T ADRA1D Missense_Mutation p.R528H 0.21 tolerated_low_confidence(0.08) benign(0.266) TCGA-55-8506-01 20 42697429 42697429 C T TOX2 3'UTR 0.43 TCGA-55-8506-01 20 43058239 43058239 C T HNF4A Silent p.V453V 0.07 TCGA-55-8506-01 20 43723800 43723800 G A KCNS1 Missense_Mutation p.T431M 0.14 deleterious(0) probably_damaging(0.996) TCGA-55-8506-01 20 43739149 43739149 G T WFDC5 Missense_Mutation p.R87S 0.25 deleterious(0.03) possibly_damaging(0.56) TCGA-55-8506-01 20 43803543 43803543 G T PI3 5'UTR 0.29 TCGA-55-8506-01 20 43944827 43944827 G T RBPJL Missense_Mutation p.A341S 0.32 deleterious(0.01) possibly_damaging(0.821) TCGA-55-8506-01 20 44237410 44237410 T C WFDC9 Missense_Mutation p.Q44R 0.50 deleterious(0) probably_damaging(0.951) TCGA-55-8506-01 20 44511649 44511650 GA - ZSWIM1 Frame_Shift_Del p.R141Sfs*24 0.09 TCGA-55-8506-01 20 44523507 44523507 C T CTSA Silent p.F323F 0.20 TCGA-55-8506-01 20 44538660 44538660 G A PLTP Missense_Mutation p.P84S 0.08 deleterious(0.02) possibly_damaging(0.859) TCGA-55-8506-01 20 44682252 44682252 G T SLC12A5 Silent p.V884V 0.27 TCGA-55-8506-01 20 4680058 4680058 C G PRNP Silent p.G64G 0.19 TCGA-55-8506-01 20 47268029 47268029 C T PREX1 Missense_Mutation p.G854S 0.13 deleterious(0.02) possibly_damaging(0.79) TCGA-55-8506-01 20 48808467 48808467 G A CEBPB Silent p.T299T 0.46 TCGA-55-8506-01 20 49225232 49225232 C T FAM65C Missense_Mutation p.R239Q 0.09 deleterious(0.01) possibly_damaging(0.847) TCGA-55-8506-01 20 49621194 49621194 G C KCNG1 Silent p.A308A 0.27 TCGA-55-8506-01 20 50273592 50273592 G A ATP9A Missense_Mutation p.A464V 0.15 deleterious(0.04) benign(0.125) TCGA-55-8506-01 20 5283044 5283044 C A PROKR2 Missense_Mutation p.R266L 0.49 tolerated(0.19) benign(0.371) TCGA-55-8506-01 20 57429587 57429587 G T GNAS Missense_Mutation p.G423W 0.53 deleterious_low_confidence(0.02) unknown(0) TCGA-55-8506-01 20 57766453 57766453 G T ZNF831 Missense_Mutation p.G127C 0.34 deleterious(0) probably_damaging(1) TCGA-55-8506-01 20 58416515 58416515 C T PHACTR3 Silent p.Y504Y 0.07 TCGA-55-8506-01 20 61288434 61288434 G A SLCO4A1 Missense_Mutation p.A210T 0.21 tolerated(0.34) benign(0.074) TCGA-55-8506-01 20 61391738 61391738 G T NTSR1 3'UTR 0.42 TCGA-55-8506-01 20 61512238 61512238 C A DIDO1 Silent p.S1690S 0.21 TCGA-55-8506-01 20 61637750 61637750 C T BHLHE23 Missense_Mutation p.R110Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 20 62038065 62038065 G T KCNQ2 Missense_Mutation p.P851T 0.29 deleterious(0) probably_damaging(1) TCGA-55-8506-01 20 62193247 62193247 C A HELZ2 Missense_Mutation p.G2207V 0.32 tolerated(0.06) possibly_damaging(0.791) TCGA-55-8506-01 20 62737407 62737407 C T NPBWR2 Missense_Mutation p.V260I 0.13 tolerated(0.86) benign(0.001) TCGA-55-8506-01 20 62737585 62737585 G A NPBWR2 Silent p.S200S 0.15 TCGA-55-8506-01 20 62871802 62871802 G T MYT1 3'UTR 0.26 TCGA-55-8506-01 21 10934047 10934047 G A TPTE Silent p.P310P 0.14 TCGA-55-8506-01 21 11038941 11038941 C A BAGE2 RNA 0.06 TCGA-55-8506-01 21 11039058 11039058 C T BAGE2 RNA 0.05 TCGA-55-8506-01 21 11039115 11039115 C A BAGE2 RNA 0.04 TCGA-55-8506-01 21 11047546 11047546 C A BAGE2 RNA 0.04 TCGA-55-8506-01 21 15748035 15748035 C A HSPA13 Missense_Mutation p.G229V 0.47 deleterious(0) probably_damaging(0.946) TCGA-55-8506-01 21 27852671 27852671 C A CYYR1 Missense_Mutation p.C85F 0.45 deleterious(0) probably_damaging(0.993) TCGA-55-8506-01 21 28306884 28306884 C G ADAMTS5 Silent p.L530L 0.34 TCGA-55-8506-01 21 31709464 31709464 G T KRTAP27-1 Missense_Mutation p.P175T 0.32 tolerated(0.15) benign(0.183) TCGA-55-8506-01 21 31914063 31914063 G T KRTAP19-6 Nonsense_Mutation p.Y30* 0.47 TCGA-55-8506-01 21 32253635 32253635 C A KRTAP11-1 Missense_Mutation p.C70F 0.45 deleterious(0) possibly_damaging(0.803) TCGA-55-8506-01 21 34927404 34927404 G T SON Missense_Mutation p.R1956L 0.29 unknown(0) TCGA-55-8506-01 21 37744773 37744773 A T MORC3 Silent p.T870T 0.22 TCGA-55-8506-01 21 38559406 38559406 A C TTC3 Missense_Mutation p.E1628A 0.28 deleterious(0.04) benign(0.089) TCGA-55-8506-01 21 41385178 41385178 G A DSCAM Missense_Mutation p.T1941M 0.24 tolerated_low_confidence(0.19) possibly_damaging(0.715) TCGA-55-8506-01 21 43162145 43162145 G A RIPK4 Missense_Mutation p.T403I 0.16 tolerated(0.24) benign(0.299) TCGA-55-8506-01 21 43954890 43954890 C - SLC37A1 Frame_Shift_Del p.H76Tfs*55 0.12 TCGA-55-8506-01 21 45798949 45798949 G A TRPM2 Missense_Mutation p.V362I 0.12 tolerated(0.19) possibly_damaging(0.545) TCGA-55-8506-01 21 46031998 46031998 C A KRTAP10-8 5'UTR 0.23 TCGA-55-8506-01 21 46047221 46047221 C A KRTAP10-9 Missense_Mutation p.L45M 0.26 deleterious(0.01) unknown(0) TCGA-55-8506-01 21 46117155 46117155 C T KRTAP10-12 Silent p.R13R 0.28 TCGA-55-8506-01 21 46117531 46117531 C A KRTAP10-12 Missense_Mutation p.P139T 0.24 deleterious(0.02) unknown(0) TCGA-55-8506-01 21 46117653 46117653 C G KRTAP10-12 Missense_Mutation p.C179W 0.35 deleterious(0) unknown(0) TCGA-55-8506-01 21 46226842 46226842 C T SUMO3 3'UTR 0.37 TCGA-55-8506-01 21 47655302 47655302 C T MCM3AP Silent p.A1941A 0.20 TCGA-55-8506-01 21 47821627 47821627 G A PCNT Missense_Mutation p.E1652K 0.10 possibly_damaging(0.651) TCGA-55-8506-01 22 17444714 17444714 C T GAB4 Silent p.P494P 0.08 TCGA-55-8506-01 22 18028664 18028664 G A CECR2 Silent p.Q1208Q 0.14 TCGA-55-8506-01 22 18769223 18769223 C A GGT3P RNA 0.18 TCGA-55-8506-01 22 19196445 19196445 T C CLTCL1 Silent p.S1143S 0.50 TCGA-55-8506-01 22 19839606 19839606 G A C22orf29 Missense_Mutation p.T60M 0.10 tolerated(0.12) benign(0.152) TCGA-55-8506-01 22 20394535 20394535 C T PI4KAP1 RNA 0.15 TCGA-55-8506-01 22 20796599 20796599 G A KLHL22 Missense_Mutation p.R556C 0.07 deleterious(0) probably_damaging(0.916) TCGA-55-8506-01 22 20939288 20939288 C T MED15 Silent p.H650H 0.09 TCGA-55-8506-01 22 21062203 21062203 C T PI4KA 3'UTR 0.09 TCGA-55-8506-01 22 21080826 21080826 C T PI4KA Missense_Mutation p.A1649T 0.40 tolerated(0.12) benign(0.055) TCGA-55-8506-01 22 21330812 21330812 G T AIFM3 Nonsense_Mutation p.G339* 0.18 TCGA-55-8506-01 22 22516909 22516909 G T IGLV4-60 Missense_Mutation p.R66L 0.20 deleterious(0.03) benign(0.012) TCGA-55-8506-01 22 22707616 22707616 C G IGLV5-48 Silent p.L68L 0.66 TCGA-55-8506-01 22 22869652 22869652 C T ZNF280A Missense_Mutation p.M101I 0.07 tolerated(0.3) benign(0.002) TCGA-55-8506-01 22 22893465 22893465 G T PRAME Missense_Mutation p.P23Q 0.22 deleterious(0) probably_damaging(0.994) TCGA-55-8506-01 22 23154502 23154502 C A IGLV3-10 Missense_Mutation p.T24K 0.44 deleterious(0.02) probably_damaging(0.973) TCGA-55-8506-01 22 23162082 23162082 G A IGLV3-9 Missense_Mutation p.G59S 0.43 deleterious(0.05) benign(0.259) TCGA-55-8506-01 22 24034690 24034690 G A RGL4 Silent p.P116P 0.07 TCGA-55-8506-01 22 24123392 24123392 C T MMP11 Missense_Mutation p.P291S 0.07 deleterious(0) possibly_damaging(0.489) TCGA-55-8506-01 22 24145517 24145517 A G SMARCB1 Missense_Mutation p.N179S 0.11 deleterious(0.03) benign(0.297) TCGA-55-8506-01 22 24219966 24219966 G T SLC2A11 Missense_Mutation p.G206W 0.27 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 22 24759259 24759259 G T SPECC1L Missense_Mutation p.R925L 0.18 deleterious(0.02) benign(0.341) TCGA-55-8506-01 22 26351272 26351272 C G MYO18B Missense_Mutation p.A2033G 0.41 deleterious(0.01) possibly_damaging(0.575) TCGA-55-8506-01 22 30951613 30951613 G A GAL3ST1 Missense_Mutation p.P200L 0.12 deleterious(0) possibly_damaging(0.777) TCGA-55-8506-01 22 31655955 31655955 A G LIMK2 Missense_Mutation p.Y127C 0.06 deleterious(0) possibly_damaging(0.867) TCGA-55-8506-01 22 31859761 31859761 C T EIF4ENIF1 Missense_Mutation p.R164Q 0.10 deleterious(0.01) probably_damaging(0.994) TCGA-55-8506-01 22 32784073 32784073 T C RTCB Missense_Mutation p.Y475C 0.37 deleterious(0) probably_damaging(0.998) TCGA-55-8506-01 22 32934035 32934035 C T SYN3 Missense_Mutation p.A327T 0.10 tolerated(0.09) unknown(0) TCGA-55-8506-01 22 34046550 34046550 C A LARGE Nonsense_Mutation p.E71* 0.23 TCGA-55-8506-01 22 35661297 35661297 G T HMGXB4 Nonsense_Mutation p.E306* 0.21 TCGA-55-8506-01 22 37333555 37333555 C A CSF2RB Missense_Mutation p.P569T 0.40 tolerated(0.11) possibly_damaging(0.492) TCGA-55-8506-01 22 37334228 37334228 T A CSF2RB Missense_Mutation p.V793D 0.20 deleterious(0.04) benign(0.035) TCGA-55-8506-01 22 38097326 38097326 G A TRIOBP 5'UTR 0.33 TCGA-55-8506-01 22 38374019 38374019 G C SOX10 Silent p.A184A 0.57 TCGA-55-8506-01 22 39884149 39884149 G A MGAT3 Missense_Mutation p.R266H 0.12 tolerated(0.22) benign(0.066) TCGA-55-8506-01 22 39908302 39908302 C T MIEF1 Nonsense_Mutation p.R130* 0.09 TCGA-55-8506-01 22 41075343 41075343 C T MCHR1 5'UTR 0.30 TCGA-55-8506-01 22 41752812 41752812 G T ZC3H7B Missense_Mutation p.R894M 0.51 deleterious(0) probably_damaging(0.99) TCGA-55-8506-01 22 42276884 42276884 C T SREBF2 Silent p.F642F 0.42 TCGA-55-8506-01 22 42608028 42608028 T G TCF20 Missense_Mutation p.E1095A 0.21 benign(0.263) TCGA-55-8506-01 22 42611186 42611186 T A TCF20 Silent p.G42G 0.19 TCGA-55-8506-01 22 42908156 42908157 CT - RRP7A 3'UTR 0.12 TCGA-55-8506-01 22 43036166 43036166 C G ATP5L2 Missense_Mutation p.V39L 0.27 deleterious(0.05) benign(0.176) TCGA-55-8506-01 22 43634903 43634903 C A SCUBE1 Missense_Mutation p.G262V 0.21 deleterious(0) probably_damaging(1) TCGA-55-8506-01 22 46631062 46631063 - A PPARA Frame_Shift_Ins p.M400Nfs*105 0.21 TCGA-55-8506-01 22 46859750 46859750 C T CELSR1 Missense_Mutation p.G1346D 0.21 deleterious(0) probably_damaging(1) TCGA-55-8506-01 22 50470331 50470331 G T TTLL8 Missense_Mutation p.H513Q 0.45 tolerated(0.35) possibly_damaging(0.9) TCGA-55-8506-01 22 51182634 51182634 G A ACR Silent p.Q237Q 0.25 TCGA-55-8506-01 2 100013306 100013306 C T EIF5B Missense_Mutation p.T1113M 0.07 benign(0.018) TCGA-55-8506-01 2 103311542 103311542 G T SLC9A2 Missense_Mutation p.G519V 0.23 deleterious(0) probably_damaging(0.941) TCGA-55-8506-01 2 103324878 103324878 C A SLC9A2 Missense_Mutation p.P790Q 0.22 deleterious_low_confidence(0) possibly_damaging(0.748) TCGA-55-8506-01 2 10560060 10560060 C A HPCAL1 Silent p.G59G 0.10 TCGA-55-8506-01 2 107459801 107459801 G T ST6GAL2 Missense_Mutation p.N211K 0.36 benign(0.124) TCGA-55-8506-01 2 107460319 107460319 C T ST6GAL2 Missense_Mutation p.V39I 0.25 benign(0.08) TCGA-55-8506-01 2 11054070 11054070 C T KCNF1 3'UTR 0.19 TCGA-55-8506-01 2 112896309 112896309 T C FBLN7 Splice_Site p.X25_splice 0.17 TCGA-55-8506-01 2 125627257 125627257 C G CNTNAP5 Missense_Mutation p.D1117E 0.28 deleterious(0.01) possibly_damaging(0.816) TCGA-55-8506-01 2 127819726 127819726 G A BIN1 Silent p.H274H 0.33 TCGA-55-8506-01 2 128262421 128262421 C A IWS1 Missense_Mutation p.S353I 0.25 deleterious_low_confidence(0.02) benign(0.1) TCGA-55-8506-01 2 128757334 128757334 G A SAP130 Silent p.T424T 0.20 TCGA-55-8506-01 2 128918775 128918775 A G UGGT1 Missense_Mutation p.I920V 0.32 deleterious(0.04) benign(0.003) TCGA-55-8506-01 2 130738214 130738214 G T RAB6C Nonsense_Mutation p.G176* 0.15 TCGA-55-8506-01 2 132240452 132240452 C - TUBA3D 3'UTR 0.14 TCGA-55-8506-01 2 141032055 141032055 C T LRP1B Silent p.K4360K 0.27 TCGA-55-8506-01 2 152361993 152361993 G T NEB Nonsense_Mutation p.S7914* 0.33 TCGA-55-8506-01 2 15432864 15432864 C A NBAS Missense_Mutation p.M1608I 0.36 tolerated(0.06) benign(0.03) TCGA-55-8506-01 2 15506814 15506814 C G NBAS Missense_Mutation p.R1236P 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-55-8506-01 2 15768800 15768800 G A DDX1 Missense_Mutation p.V600I 0.22 tolerated(0.41) possibly_damaging(0.684) TCGA-55-8506-01 2 158178034 158178034 G T ERMN Silent p.R215R 0.31 TCGA-55-8506-01 2 160005783 160005783 G T TANC1 Missense_Mutation p.M165I 0.32 tolerated(0.3) benign(0.15) TCGA-55-8506-01 2 160205777 160205777 T C BAZ2B Silent p.V1626V 0.34 TCGA-55-8506-01 2 163693073 163693073 A G KCNH7 Missense_Mutation p.V94A 0.31 deleterious(0.02) probably_damaging(0.996) TCGA-55-8506-01 2 165997285 165997285 G T SCN3A Missense_Mutation p.S632Y 0.31 deleterious(0) probably_damaging(0.956) TCGA-55-8506-01 2 166245269 166245269 T G SCN2A Missense_Mutation p.F1651L 0.28 deleterious(0.04) benign(0.036) TCGA-55-8506-01 2 166536039 166536039 G T CSRNP3 Missense_Mutation p.G512C 0.37 deleterious_low_confidence(0.04) possibly_damaging(0.544) TCGA-55-8506-01 2 168105180 168105180 A C XIRP2 Missense_Mutation p.K2426N 0.12 probably_damaging(0.999) TCGA-55-8506-01 2 168105801 168105801 G T XIRP2 Silent p.S2633S 0.32 TCGA-55-8506-01 2 168725511 168725511 G A B3GALT1 5'UTR 0.09 TCGA-55-8506-01 2 170344494 170344494 C A BBS5 Intron 0.16 TCGA-55-8506-01 2 174081938 174081938 A T MLTK Missense_Mutation p.K316M 0.33 deleterious(0) possibly_damaging(0.705) TCGA-55-8506-01 2 176957905 176957905 C T HOXD13 Missense_Mutation p.A96V 0.13 deleterious(0.05) possibly_damaging(0.798) TCGA-55-8506-01 2 179446445 179446445 C T TTN Missense_Mutation p.G22184S 0.21 TCGA-55-8506-01 2 179462479 179462479 G T TTN Silent p.I19110I 0.25 TCGA-55-8506-01 2 179479024 179479024 G A TTN Missense_Mutation p.S16367L 0.28 TCGA-55-8506-01 2 179481642 179481642 G A TTN Missense_Mutation p.P15992S 0.34 TCGA-55-8506-01 2 179542560 179542560 T A TTN Missense_Mutation p.E11360V 0.31 TCGA-55-8506-01 2 179647602 179647602 C A TTN Missense_Mutation p.G1011W 0.29 TCGA-55-8506-01 2 182392052 182392052 G T ITGA4 Nonsense_Mutation p.G790* 0.13 TCGA-55-8506-01 2 182543084 182543084 G A NEUROD1 Silent p.F168F 0.14 TCGA-55-8506-01 2 182543230 182543230 C A NEUROD1 Missense_Mutation p.A120S 0.20 deleterious(0) probably_damaging(1) TCGA-55-8506-01 2 182543231 182543231 C A NEUROD1 Silent p.A119A 0.19 TCGA-55-8506-01 2 183800042 183800042 C A NCKAP1 Missense_Mutation p.L925F 0.25 deleterious(0.01) probably_damaging(0.949) TCGA-55-8506-01 2 183960192 183960192 G A DUSP19 Missense_Mutation p.V154I 0.13 tolerated(0.25) benign(0.215) TCGA-55-8506-01 2 187528564 187528564 T C ITGAV Splice_Site p.X642_splice 0.32 TCGA-55-8506-01 2 187703804 187703804 C T ZSWIM2 Missense_Mutation p.E126K 0.27 tolerated(0.54) benign(0.003) TCGA-55-8506-01 2 197171285 197171285 G A HECW2 Missense_Mutation p.T914M 0.22 deleterious(0) benign(0.444) TCGA-55-8506-01 2 197172720 197172721 GG T HECW2 Frame_Shift_Del p.P842Qfs*18 0.12 TCGA-55-8506-01 2 197784851 197784851 C A PGAP1 Silent p.L57L 0.24 TCGA-55-8506-01 2 197990610 197990610 C A ANKRD44 Missense_Mutation p.R138L 0.33 deleterious(0) probably_damaging(0.997) TCGA-55-8506-01 2 198950568 198950568 C A PLCL1 Missense_Mutation p.P776H 0.25 deleterious(0) probably_damaging(1) TCGA-55-8506-01 2 201501757 201501757 G C AOX1 Missense_Mutation p.A824P 0.30 deleterious(0) probably_damaging(0.984) TCGA-55-8506-01 2 20200294 20200294 C T MATN3 Missense_Mutation p.C359Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 2 206364664 206364664 G A PARD3B Missense_Mutation p.R968Q 0.15 deleterious(0) probably_damaging(0.945) TCGA-55-8506-01 2 207176035 207176035 G T ZDBF2 Missense_Mutation p.K2261N 0.22 tolerated(0.12) benign(0.002) TCGA-55-8506-01 2 207834175 207834175 G T CPO 3'UTR 0.18 TCGA-55-8506-01 2 212248542 212248542 T A ERBB4 Missense_Mutation p.Y1242F 0.36 tolerated(0.05) benign(0.009) TCGA-55-8506-01 2 21229237 21229237 C A APOB Missense_Mutation p.K3501N 0.24 possibly_damaging(0.821) TCGA-55-8506-01 2 21233373 21233373 T A APOB Missense_Mutation p.N2123Y 0.41 benign(0.08) TCGA-55-8506-01 2 215645459 215645459 T - BARD1 Frame_Shift_Del p.N380Tfs*20 0.09 TCGA-55-8506-01 2 219247073 219247073 A T SLC11A1 5'UTR 0.17 TCGA-55-8506-01 2 219452363 219452363 A T RQCD1 Missense_Mutation p.E162V 0.12 deleterious(0) probably_damaging(0.987) TCGA-55-8506-01 2 219544360 219544360 G T STK36 Missense_Mutation p.D286Y 0.28 deleterious(0) benign(0.392) TCGA-55-8506-01 2 219563913 219563913 C A STK36 Missense_Mutation p.L1216M 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-55-8506-01 2 219897217 219897217 G A CCDC108 Missense_Mutation p.P207L 0.36 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 2 220312928 220312928 A T SPEG Missense_Mutation p.T350S 0.32 benign(0.005) TCGA-55-8506-01 2 220413918 220413918 C T TMEM198 Missense_Mutation p.R263W 0.24 deleterious(0) possibly_damaging(0.689) TCGA-55-8506-01 2 220432115 220432115 C T OBSL1 Missense_Mutation p.G573R 0.17 deleterious(0) probably_damaging(0.986) TCGA-55-8506-01 2 223553080 223553080 A T MOGAT1 Missense_Mutation p.I38F 0.20 tolerated(0.06) benign(0.015) TCGA-55-8506-01 2 223574454 223574454 G T MOGAT1 Splice_Site p.X285_splice 0.31 TCGA-55-8506-01 2 230661315 230661315 A - TRIP12 Frame_Shift_Del p.S1195Lfs*24 0.12 TCGA-55-8506-01 2 230911238 230911238 G T SLC16A14 Missense_Mutation p.L202M 0.24 deleterious(0.04) probably_damaging(0.991) TCGA-55-8506-01 2 231077604 231077604 C A SP110 Missense_Mutation p.C152F 0.31 tolerated(0.44) possibly_damaging(0.506) TCGA-55-8506-01 2 232263016 232263016 G A B3GNT7 Missense_Mutation p.E196K 0.20 deleterious(0) probably_damaging(1) TCGA-55-8506-01 2 234621866 234621866 C A UGT1A5 Missense_Mutation p.L77M 0.33 tolerated(0.19) benign(0.199) TCGA-55-8506-01 2 234622397 234622397 G A UGT1A5 Missense_Mutation p.V254M 0.33 deleterious(0.01) benign(0.189) TCGA-55-8506-01 2 235950663 235950663 G T SH3BP4 Missense_Mutation p.R417M 0.09 tolerated(0.2) probably_damaging(0.993) TCGA-55-8506-01 2 238726844 238726844 A T RBM44 Missense_Mutation p.T429S 0.29 tolerated(1) benign(0.001) TCGA-55-8506-01 2 242610158 242610158 T C ATG4B Silent p.T325T 0.45 TCGA-55-8506-01 2 242644135 242644135 G T ING5 Silent p.T35T 0.24 TCGA-55-8506-01 2 242756340 242756340 G C NEU4 Silent p.V164V 0.17 TCGA-55-8506-01 2 25054603 25054603 A G ADCY3 Silent p.Y661Y 0.21 TCGA-55-8506-01 2 27356445 27356445 G A PREB Missense_Mutation p.R94C 0.17 deleterious(0) possibly_damaging(0.841) TCGA-55-8506-01 2 27361088 27361088 G T C2orf53 Missense_Mutation p.P37H 0.41 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 2 27427724 27427724 T A SLC5A6 Missense_Mutation p.L270F 0.30 deleterious(0.01) probably_damaging(0.985) TCGA-55-8506-01 2 27466162 27466162 T A CAD Splice_Site p.X2192_splice 0.37 TCGA-55-8506-01 2 28248183 28248183 C T BRE Missense_Mutation p.R131C 0.32 tolerated(0.1) probably_damaging(0.931) TCGA-55-8506-01 2 31178519 31178519 C G GALNT14 Missense_Mutation p.D212H 0.30 tolerated(0.3) probably_damaging(0.979) TCGA-55-8506-01 2 32093470 32093470 C A MEMO1 Missense_Mutation p.S285I 0.33 deleterious(0) probably_damaging(0.997) TCGA-55-8506-01 2 37872877 37872877 T A CDC42EP3 3'UTR 0.35 TCGA-55-8506-01 2 43927371 43927371 G T PLEKHH2 Missense_Mutation p.G425V 0.23 tolerated(0.09) benign(0.066) TCGA-55-8506-01 2 45233522 45233522 C T SIX2 Silent p.T221T 0.04 TCGA-55-8506-01 2 45614 45614 T C FAM110C Missense_Mutation p.S258G 0.19 tolerated(0.15) benign(0.324) TCGA-55-8506-01 2 46574053 46574053 C T EPAS1 Missense_Mutation p.A23V 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 2 46986015 46986015 C T SOCS5 Nonsense_Mutation p.R116* 0.30 TCGA-55-8506-01 2 47300958 47300958 G A TTC7A Missense_Mutation p.A825T 0.13 tolerated(0.1) possibly_damaging(0.794) TCGA-55-8506-01 2 51255066 51255066 T G NRXN1 Missense_Mutation p.S116R 0.14 tolerated(0.64) benign(0.002) TCGA-55-8506-01 2 55826111 55826111 C T SMEK2 Missense_Mutation p.R121Q 0.17 tolerated(0.15) benign(0.007) TCGA-55-8506-01 2 5833260 5833260 A G SOX11 Missense_Mutation p.Q136R 0.33 tolerated(0.14) benign(0.007) TCGA-55-8506-01 2 68873024 68873024 A T PROKR1 Missense_Mutation p.N24I 0.18 deleterious(0.01) benign(0.089) TCGA-55-8506-01 2 71039601 71039601 G C CLEC4F Missense_Mutation p.S506C 0.31 deleterious(0) probably_damaging(0.993) TCGA-55-8506-01 2 71044163 71044163 C A CLEC4F Missense_Mutation p.W117L 0.30 tolerated(0.07) benign(0.105) TCGA-55-8506-01 2 71044165 71044165 G A CLEC4F Silent p.A116A 0.27 TCGA-55-8506-01 2 73675107 73675107 G T ALMS1 Missense_Mutation p.G484C 0.30 possibly_damaging(0.537) TCGA-55-8506-01 2 73677495 73677495 G T ALMS1 Missense_Mutation p.V1280L 0.33 benign(0.117) TCGA-55-8506-01 2 74758070 74758070 A T HTRA2 Silent p.S248S 0.32 TCGA-55-8506-01 2 75113790 75113790 G A HK2 Missense_Mutation p.G737S 0.07 deleterious(0.02) benign(0.397) TCGA-55-8506-01 2 77745818 77745818 C A LRRTM4 Missense_Mutation p.D393Y 0.30 tolerated(0.13) benign(0.004) TCGA-55-8506-01 2 84670503 84670503 C T SUCLG1 Missense_Mutation p.A75T 0.15 deleterious_low_confidence(0.03) benign(0.161) TCGA-55-8506-01 2 84811317 84811317 G T DNAH6 Missense_Mutation p.L808F 0.06 deleterious(0) probably_damaging(0.963) TCGA-55-8506-01 2 86094752 86094752 C T ST3GAL5 Intron 0.31 TCGA-55-8506-01 2 86255821 86255821 C A POLR1A Missense_Mutation p.R1598L 0.28 tolerated(0.1) benign(0.169) TCGA-55-8506-01 2 86992221 86992221 A G RMND5A Missense_Mutation p.Y198C 0.35 tolerated(0.06) possibly_damaging(0.481) TCGA-55-8506-01 2 89246966 89246966 G C IGKV1-5 Silent p.L68L 0.34 TCGA-55-8506-01 2 89986982 89986982 G T IGKV2D-29 Missense_Mutation p.S88I 0.33 deleterious(0.04) benign(0.388) TCGA-55-8506-01 2 95540641 95540641 C G TEKT4 Silent p.S278S 0.24 TCGA-55-8506-01 2 95815741 95815741 T C ZNF514 Silent p.R163R 0.18 TCGA-55-8506-01 2 95941728 95941728 C T PROM2 Silent p.L115L 0.32 TCGA-55-8506-01 2 97008912 97008912 G A NCAPH Silent p.A155A 0.23 TCGA-55-8506-01 2 97751935 97751935 C A FAHD2B Nonsense_Mutation p.E155* 0.29 TCGA-55-8506-01 2 99438349 99438349 G A KIAA1211L Missense_Mutation p.A796V 0.31 tolerated(0.67) benign(0.042) TCGA-55-8506-01 2 99614673 99614673 T C TSGA10 Missense_Mutation p.Y695C 0.25 deleterious(0) benign(0.35) TCGA-55-8506-01 3 100364805 100364805 C T GPR128 Silent p.C321C 0.14 TCGA-55-8506-01 3 108396394 108396394 T A DZIP3 Missense_Mutation p.S944R 0.26 deleterious(0.03) probably_damaging(0.948) TCGA-55-8506-01 3 111799897 111799897 C A TMPRSS7 Missense_Mutation p.P707H 0.08 tolerated(0.16) possibly_damaging(0.646) TCGA-55-8506-01 3 113115476 113115476 T C WDR52 Silent p.G556G 0.59 TCGA-55-8506-01 3 113499941 113499941 G T ATP6V1A Missense_Mutation p.V43L 0.53 deleterious(0) benign(0.202) TCGA-55-8506-01 3 113513751 113513751 G T ATP6V1A Missense_Mutation p.G341C 0.23 deleterious(0) probably_damaging(1) TCGA-55-8506-01 3 119582446 119582446 G A GSK3B Nonsense_Mutation p.R319* 0.31 TCGA-55-8506-01 3 121305243 121305243 C A ARGFX Missense_Mutation p.H248Q 0.32 tolerated(0.21) benign(0.006) TCGA-55-8506-01 3 121448804 121448804 G A GOLGB1 Missense_Mutation p.R53C 0.34 probably_damaging(1) TCGA-55-8506-01 3 122102053 122102053 C A CCDC58 Missense_Mutation p.G7C 0.52 deleterious(0.02) benign(0.195) TCGA-55-8506-01 3 122645426 122645426 G T SEMA5B Missense_Mutation p.R371S 0.31 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 3 123359146 123359146 C A MYLK Missense_Mutation p.A1609S 0.26 deleterious(0) probably_damaging(0.997) TCGA-55-8506-01 3 123419193 123419193 G A MYLK Missense_Mutation p.A1041V 0.15 tolerated(0.11) benign(0.013) TCGA-55-8506-01 3 123512631 123512631 C T MYLK Missense_Mutation p.D20N 0.22 tolerated_low_confidence(0.11) benign(0.044) TCGA-55-8506-01 3 125828808 125828808 C A ALDH1L1 Missense_Mutation p.G786W 0.09 deleterious(0) probably_damaging(0.996) TCGA-55-8506-01 3 126207048 126207048 C A UROC1 Missense_Mutation p.V655L 0.25 deleterious(0) probably_damaging(0.986) TCGA-55-8506-01 3 126260990 126260990 C G CHST13 Missense_Mutation p.R199G 0.33 deleterious(0) probably_damaging(0.988) TCGA-55-8506-01 3 126707962 126707962 G T PLXNA1 Missense_Mutation p.G176W 0.31 deleterious(0) probably_damaging(0.949) TCGA-55-8506-01 3 128711997 128711997 G A KIAA1257 Missense_Mutation p.P51S 0.29 tolerated(0.58) benign(0.004) TCGA-55-8506-01 3 128849434 128849434 G A ISY1 Nonsense_Mutation p.Q259* 0.24 TCGA-55-8506-01 3 129267890 129267890 C A H1FOO Missense_Mutation p.P142H 0.17 deleterious(0.02) possibly_damaging(0.563) TCGA-55-8506-01 3 130743267 130743267 G T ASTE1 Missense_Mutation p.S295Y 0.32 deleterious(0.01) possibly_damaging(0.701) TCGA-55-8506-01 3 131271328 131271328 T C CPNE4 Missense_Mutation p.H375R 0.15 deleterious(0) probably_damaging(0.994) TCGA-55-8506-01 3 133485249 133485249 C A TF Silent p.L486L 0.30 TCGA-55-8506-01 3 133495985 133495985 A G TF Silent p.V655V 0.28 TCGA-55-8506-01 3 135806729 135806729 A G PPP2R3A Silent p.S931S 0.18 TCGA-55-8506-01 3 138187531 138187533 TCT - ESYT3 In_Frame_Del p.F449del 0.08 TCGA-55-8506-01 3 140251315 140251315 C T CLSTN2 Silent p.G498G 0.23 TCGA-55-8506-01 3 142238585 142238585 G A ATR Silent p.N1436N 0.14 TCGA-55-8506-01 3 142840271 142840271 T C CHST2 Missense_Mutation p.Y205H 0.13 tolerated(0.06) probably_damaging(0.998) TCGA-55-8506-01 3 147130413 147130413 G C ZIC1 Missense_Mutation p.C364S 0.28 deleterious(0) probably_damaging(0.997) TCGA-55-8506-01 3 150416635 150416635 C A FAM194A Missense_Mutation p.V166L 0.25 tolerated(0.12) benign(0.031) TCGA-55-8506-01 3 151161336 151161336 G A IGSF10 Missense_Mutation p.T1800M 0.29 tolerated(0.14) benign(0.418) TCGA-55-8506-01 3 15275390 15275390 C G CAPN7 Missense_Mutation p.A399G 0.29 deleterious(0.01) probably_damaging(0.967) TCGA-55-8506-01 3 153998375 153998375 T - DHX36 Frame_Shift_Del p.R854Efs*4 0.12 TCGA-55-8506-01 3 154139017 154139017 A G GPR149 Silent p.I478I 0.31 TCGA-55-8506-01 3 154147339 154147339 A T GPR149 Silent p.S22S 0.33 TCGA-55-8506-01 3 154855908 154855908 G A MME Silent p.V246V 0.26 TCGA-55-8506-01 3 155199898 155199898 C A PLCH1 Missense_Mutation p.W1314L 0.19 tolerated_low_confidence(0.57) benign(0.028) TCGA-55-8506-01 3 156763610 156763610 A C LEKR1 3'UTR 0.12 TCGA-55-8506-01 3 160967314 160967315 AG - NMD3 Frame_Shift_Del p.E429Kfs*6 0.17 TCGA-55-8506-01 3 16312542 16312542 T C OXNAD1 Missense_Mutation p.L28S 0.53 tolerated(0.07) benign(0.007) TCGA-55-8506-01 3 164777734 164777734 C A SI Missense_Mutation p.V368L 0.25 tolerated(0.53) benign(0.008) TCGA-55-8506-01 3 164907407 164907407 A T SLITRK3 Silent p.L404L 0.23 TCGA-55-8506-01 3 165547575 165547575 G T BCHE Missense_Mutation p.A416D 0.26 deleterious(0) probably_damaging(0.985) TCGA-55-8506-01 3 169694773 169694773 C T SEC62 Missense_Mutation p.A62V 0.25 deleterious(0.03) probably_damaging(0.94) TCGA-55-8506-01 3 172165385 172165385 C T GHSR Intron 0.24 TCGA-55-8506-01 3 172165996 172165996 G A GHSR Missense_Mutation p.R70C 0.11 tolerated(0.06) probably_damaging(0.953) TCGA-55-8506-01 3 180671564 180671564 A - FXR1 Frame_Shift_Del p.K274Rfs*23 0.15 TCGA-55-8506-01 3 182841853 182841854 - C LAMP3 3'UTR 0.30 TCGA-55-8506-01 3 183059375 183059375 G T MCF2L2 Silent p.R107R 0.25 TCGA-55-8506-01 3 183887823 183887823 G A DVL3 Missense_Mutation p.D510N 0.22 tolerated(0.2) probably_damaging(0.998) TCGA-55-8506-01 3 184910477 184910477 C A EHHADH Missense_Mutation p.R570L 0.40 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 3 185146649 185146649 G T MAP3K13 Nonsense_Mutation p.E94* 0.17 TCGA-55-8506-01 3 185766416 185766416 C T ETV5 3'UTR 0.31 TCGA-55-8506-01 3 186038186 186038186 T A DGKG Silent p.S21S 0.38 TCGA-55-8506-01 3 186256678 186256678 C A CRYGS Missense_Mutation p.C115F 0.35 deleterious(0) probably_damaging(0.984) TCGA-55-8506-01 3 188326966 188326966 A T LPP Silent p.T149T 0.36 TCGA-55-8506-01 3 189587169 189587169 C A TP63 Missense_Mutation p.P396T 0.30 tolerated(0.34) benign(0.011) TCGA-55-8506-01 3 190026123 190026123 G A CLDN1 Silent p.Y193Y 0.29 TCGA-55-8506-01 3 194080796 194080796 C T LRRC15 Missense_Mutation p.R332H 0.17 tolerated(0.07) benign(0.171) TCGA-55-8506-01 3 19554525 19554527 GAG - KCNH8 In_Frame_Del p.E718del 0.24 TCGA-55-8506-01 3 195594628 195594628 C A TNK2 Silent p.V910V 0.41 TCGA-55-8506-01 3 196129880 196129880 G A UBXN7 Missense_Mutation p.R78C 0.31 deleterious(0) possibly_damaging(0.873) TCGA-55-8506-01 3 27203888 27203888 C T NEK10 3'UTR 0.10 TCGA-55-8506-01 3 38420767 38420767 C T XYLB Nonsense_Mutation p.R409* 0.18 TCGA-55-8506-01 3 45823592 45823592 G A SLC6A20 Missense_Mutation p.P82L 0.24 deleterious(0) probably_damaging(1) TCGA-55-8506-01 3 46245366 46245366 C T CCR1 Missense_Mutation p.V147I 0.16 tolerated(0.11) benign(0.096) TCGA-55-8506-01 3 48423486 48423486 C A FBXW12 Missense_Mutation p.H402Q 0.40 tolerated(0.06) probably_damaging(0.932) TCGA-55-8506-01 3 48454014 48454014 C A PLXNB1 Nonsense_Mutation p.E1624* 0.53 TCGA-55-8506-01 3 48613831 48613831 A T COL7A1 Splice_Site p.X1924_splice 0.14 TCGA-55-8506-01 3 48659165 48659167 GCA - TMEM89 In_Frame_Del p.L8del 0.29 TCGA-55-8506-01 3 48696507 48696507 G T CELSR3 Missense_Mutation p.F1187L 0.50 deleterious(0) probably_damaging(0.995) TCGA-55-8506-01 3 49338076 49338076 C A USP4 Missense_Mutation p.V446L 0.24 deleterious(0.01) benign(0.229) TCGA-55-8506-01 3 49897094 49897094 G T CAMKV Missense_Mutation p.P388Q 0.42 tolerated(0.25) probably_damaging(0.996) TCGA-55-8506-01 3 52437152 52437152 A G BAP1 Splice_Site p.X630_splice 0.17 TCGA-55-8506-01 3 52521216 52521216 G T NISCH Nonsense_Mutation p.E570* 0.15 TCGA-55-8506-01 3 53381435 53381435 G T DCP1A Missense_Mutation p.T37N 0.21 tolerated(0.22) possibly_damaging(0.456) TCGA-55-8506-01 3 53531424 53531424 G A CACNA1D Missense_Mutation p.A105T 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-55-8506-01 3 57108022 57108024 TCT - SPATA12 In_Frame_Del p.L102del 0.37 TCGA-55-8506-01 3 57994537 57994537 G T FLNB Silent p.V82V 0.40 TCGA-55-8506-01 3 64132744 64132744 C A PRICKLE2 Silent p.P474P 0.47 TCGA-55-8506-01 3 64617586 64617586 G A ADAMTS9 Missense_Mutation p.H731Y 0.23 deleterious(0) possibly_damaging(0.905) TCGA-55-8506-01 3 78766919 78766919 C G ROBO1 Missense_Mutation p.V258L 0.40 deleterious(0.01) probably_damaging(0.98) TCGA-55-8506-01 3 97852029 97852029 T A OR5H1 Nonsense_Mutation p.L163* 0.31 TCGA-55-8506-01 4 101108734 101108734 C A DDIT4L 3'UTR 0.21 TCGA-55-8506-01 4 102951317 102951317 A - BANK1 Frame_Shift_Del p.T601Lfs*8 0.16 TCGA-55-8506-01 4 10515189 10515189 G T CLNK Missense_Mutation p.Q269K 0.20 deleterious(0.05) benign(0.055) TCGA-55-8506-01 4 106601218 106601218 T A ARHGEF38 3'UTR 0.27 TCGA-55-8506-01 4 107956660 107956660 C G DKK2 Missense_Mutation p.S30T 0.23 tolerated(0.28) benign(0.007) TCGA-55-8506-01 4 113353213 113353213 G A ALPK1 Missense_Mutation p.G837D 0.21 tolerated(0.18) benign(0.023) TCGA-55-8506-01 4 114276131 114276131 G - ANK2 Frame_Shift_Del p.G2120Efs*36 0.15 TCGA-55-8506-01 4 115998249 115998249 G A NDST4 5'UTR 0.40 TCGA-55-8506-01 4 123748452 123748452 G T FGF2 Silent p.L174L 0.17 TCGA-55-8506-01 4 1244607 1244607 G A CTBP1 5'Flank 0.22 TCGA-55-8506-01 4 126239639 126239639 G T FAT4 Silent p.P691P 0.25 TCGA-55-8506-01 4 128870977 128870977 T A MFSD8 Silent p.I60I 0.32 TCGA-55-8506-01 4 129770171 129770171 G A JADE1 Silent p.R111R 0.25 TCGA-55-8506-01 4 129867217 129867217 C A SCLT1 Missense_Mutation p.D462Y 0.26 deleterious(0) probably_damaging(0.982) TCGA-55-8506-01 4 1343514 1343514 C - UVSSA Frame_Shift_Del p.R103Gfs*7 0.09 TCGA-55-8506-01 4 1388397 1388397 C A CRIPAK Missense_Mutation p.P33Q 0.28 tolerated_low_confidence(0.07) probably_damaging(0.985) TCGA-55-8506-01 4 1388916 1388916 G T CRIPAK Missense_Mutation p.G206V 0.26 tolerated(0.43) probably_damaging(0.988) TCGA-55-8506-01 4 154625707 154625707 G A TLR2 Missense_Mutation p.A550T 0.11 tolerated(0.42) benign(0.039) TCGA-55-8506-01 4 156725880 156725880 G T GUCY1B3 Missense_Mutation p.V564L 0.33 tolerated(0.23) benign(0.159) TCGA-55-8506-01 4 159627914 159627914 G A ETFDH Silent p.P534P 0.14 TCGA-55-8506-01 4 1643057 1643057 C A FAM53A Missense_Mutation p.R387L 0.32 tolerated(0.21) benign(0.02) TCGA-55-8506-01 4 16504338 16504338 G T LDB2 Missense_Mutation p.S350R 0.30 deleterious(0.02) benign(0.003) TCGA-55-8506-01 4 1657194 1657194 C A FAM53A Silent p.V131V 0.19 TCGA-55-8506-01 4 16587547 16587547 T A LDB2 Missense_Mutation p.R205W 0.28 deleterious(0) probably_damaging(0.997) TCGA-55-8506-01 4 169282357 169282357 C A DDX60L Missense_Mutation p.R1645L 0.30 tolerated(0.09) benign(0.003) TCGA-55-8506-01 4 173961139 173961141 AGA - GALNTL6 In_Frame_Del p.K567del 0.35 TCGA-55-8506-01 4 175439175 175439175 T C HPGD Missense_Mutation p.N91D 0.22 deleterious(0) probably_damaging(1) TCGA-55-8506-01 4 177093569 177093569 C T WDR17 Missense_Mutation p.T1088I 0.18 tolerated(0.11) benign(0.002) TCGA-55-8506-01 4 178272593 178272593 T C NEIL3 Missense_Mutation p.M310T 0.29 tolerated(0.65) benign(0.002) TCGA-55-8506-01 4 183836692 183836692 G A DCTD Silent p.D21D 0.20 TCGA-55-8506-01 4 184931701 184931701 C T STOX2 Silent p.C570C 0.41 TCGA-55-8506-01 4 187004485 187004485 G A TLR3 Missense_Mutation p.A549T 0.33 tolerated(0.11) possibly_damaging(0.792) TCGA-55-8506-01 4 187073101 187073101 G T FAM149A 5'UTR 0.13 TCGA-55-8506-01 4 187192886 187192886 C A F11 Missense_Mutation p.T60N 0.32 deleterious(0) probably_damaging(0.966) TCGA-55-8506-01 4 1985037 1985037 C A NELFA 3'UTR 0.20 TCGA-55-8506-01 4 25005234 25005234 C A LGI2 Missense_Mutation p.D493Y 0.15 deleterious(0) probably_damaging(0.984) TCGA-55-8506-01 4 289822 289822 G A ZNF732 Silent p.S42S 0.12 TCGA-55-8506-01 4 3419262 3419262 G A RGS12 Missense_Mutation p.A919T 0.14 tolerated(0.61) benign(0.001) TCGA-55-8506-01 4 3422371 3422371 G A RGS12 Missense_Mutation p.A922T 0.10 tolerated(0.4) benign(0.003) TCGA-55-8506-01 4 4199545 4199545 G T OTOP1 Missense_Mutation p.S339Y 0.31 deleterious(0) probably_damaging(0.996) TCGA-55-8506-01 4 42065120 42065120 A C SLC30A9 Silent p.P338P 0.19 TCGA-55-8506-01 4 42145736 42145736 T A BEND4 Missense_Mutation p.N255Y 0.23 deleterious_low_confidence(0) possibly_damaging(0.854) TCGA-55-8506-01 4 46930762 46930762 G T GABRA4 Missense_Mutation p.A382D 0.31 tolerated(0.16) benign(0.333) TCGA-55-8506-01 4 46995383 46995383 A - GABRA4 Frame_Shift_Del p.L20Pfs*11 0.13 TCGA-55-8506-01 4 47560211 47560211 C T ATP10D Silent p.H785H 0.20 TCGA-55-8506-01 4 47892677 47892677 C T NFXL1 Missense_Mutation p.R499Q 0.16 deleterious(0.01) probably_damaging(0.975) TCGA-55-8506-01 4 48555307 48555307 A G FRYL Missense_Mutation p.S1454P 0.14 tolerated(0.47) possibly_damaging(0.794) TCGA-55-8506-01 4 55133807 55133807 G T PDGFRA Silent p.R340R 0.21 TCGA-55-8506-01 4 55152032 55152032 C T PDGFRA Missense_Mutation p.R822C 0.32 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 4 55152033 55152033 G T PDGFRA Missense_Mutation p.R822L 0.32 deleterious(0) probably_damaging(0.995) TCGA-55-8506-01 4 5624405 5624405 C G EVC2 Missense_Mutation p.R787P 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-55-8506-01 4 57182506 57182506 G A KIAA1211 Silent p.P946P 0.18 TCGA-55-8506-01 4 57204735 57204735 C T AASDH Missense_Mutation p.D1044N 0.33 deleterious(0) possibly_damaging(0.659) TCGA-55-8506-01 4 57301963 57301963 G A PAICS 5'Flank 0.24 TCGA-55-8506-01 4 57333819 57333820 - G SRP72 Frame_Shift_Ins p.V9Gfs*9 0.15 TCGA-55-8506-01 4 5827333 5827333 C G CRMP1 Missense_Mutation p.E619D 0.37 tolerated(0.69) benign(0.002) TCGA-55-8506-01 4 619637 619637 C T PDE6B Silent p.R74R 0.32 TCGA-55-8506-01 4 65147235 65147235 G T TECRL Missense_Mutation p.T292K 0.27 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 4 65275093 65275093 G T TECRL 5'UTR 0.30 TCGA-55-8506-01 4 6611639 6611639 C - MAN2B2 Frame_Shift_Del p.L709Wfs*3 0.26 TCGA-55-8506-01 4 66231662 66231665 CTCT - EPHA5 Frame_Shift_Del p.R679Lfs*15 0.10 TCGA-55-8506-01 4 6718511 6718511 A C BLOC1S4 Missense_Mutation p.Q192P 0.19 tolerated(0.3) benign(0.013) TCGA-55-8506-01 4 69536127 69536127 A T UGT2B15 Silent p.S70S 0.31 TCGA-55-8506-01 4 70359461 70359461 C T UGT2B4 Missense_Mutation p.V274I 0.29 tolerated(0.11) benign(0.033) TCGA-55-8506-01 4 70359531 70359531 C T UGT2B4 Missense_Mutation p.M250I 0.17 deleterious(0.04) benign(0.072) TCGA-55-8506-01 4 70715239 70715239 A T SULT1E1 Missense_Mutation p.F138I 0.34 deleterious(0) benign(0.248) TCGA-55-8506-01 4 71200777 71200777 C A CABS1 Silent p.P7P 0.27 TCGA-55-8506-01 4 7435832 7435832 C - PSAPL1 Frame_Shift_Del p.A259Hfs*5 0.20 TCGA-55-8506-01 4 76442067 76442067 A - THAP6 Frame_Shift_Del p.G58Efs*23 0.10 TCGA-55-8506-01 4 7787982 7787982 C A AFAP1 Missense_Mutation p.G490V 0.32 deleterious(0.02) possibly_damaging(0.885) TCGA-55-8506-01 4 78806483 78806483 T A MRPL1 Missense_Mutation p.V159E 0.19 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 4 79440603 79440603 C A FRAS1 Missense_Mutation p.S3503Y 0.28 probably_damaging(0.999) TCGA-55-8506-01 4 79847761 79847761 T C PAQR3 Missense_Mutation p.I206V 0.31 tolerated(0.56) benign(0.017) TCGA-55-8506-01 4 83582156 83582156 T C SCD5 Intron 0.15 TCGA-55-8506-01 4 85715676 85715677 - T WDFY3 Frame_Shift_Ins p.N1161Kfs*4 0.23 TCGA-55-8506-01 4 88583631 88583631 G A DMP1 Missense_Mutation p.S234N 0.13 tolerated(0.1) benign(0.045) TCGA-55-8506-01 4 88731895 88731895 T C IBSP Silent p.A128A 0.20 TCGA-55-8506-01 4 88902736 88902736 A C SPP1 Missense_Mutation p.D109A 0.13 tolerated(0.06) probably_damaging(0.959) TCGA-55-8506-01 4 89380600 89380600 A G HERC5 Missense_Mutation p.N123S 0.30 tolerated(0.62) benign(0.003) TCGA-55-8506-01 4 95129564 95129564 G T SMARCAD1 Missense_Mutation p.D7Y 0.22 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-55-8506-01 4 951686 951686 C A TMEM175 Missense_Mutation p.T306N 0.09 tolerated(0.17) benign(0.158) TCGA-55-8506-01 4 96761365 96761365 C A PDHA2 Missense_Mutation p.L22M 0.25 tolerated(0.15) benign(0.081) TCGA-55-8506-01 4 98480250 98480250 T A STPG2 Nonsense_Mutation p.K447* 0.20 TCGA-55-8506-01 4 99325714 99325714 G T RAP1GDS1 Nonsense_Mutation p.E243* 0.33 TCGA-55-8506-01 5 10426634 10426634 G C MARCH6 Missense_Mutation p.G836R 0.18 tolerated(0.31) possibly_damaging(0.809) TCGA-55-8506-01 5 108380497 108380497 G C FER Splice_Site p.X610_splice 0.61 TCGA-55-8506-01 5 112458519 112458519 C A MCC Nonsense_Mutation p.E297* 0.48 TCGA-55-8506-01 5 115298832 115298832 G T AQPEP Missense_Mutation p.R173L 0.26 tolerated(0.14) possibly_damaging(0.591) TCGA-55-8506-01 5 126738285 126738285 C T MEGF10 Silent p.N276N 0.21 TCGA-55-8506-01 5 127674690 127674690 C T FBN2 Missense_Mutation p.G1136D 0.49 deleterious(0) probably_damaging(0.99) TCGA-55-8506-01 5 127692978 127692978 C A FBN2 Missense_Mutation p.L888F 0.27 tolerated(0.71) benign(0.012) TCGA-55-8506-01 5 128441039 128441040 AG - ISOC1 Frame_Shift_Del p.E198Dfs*37 0.18 TCGA-55-8506-01 5 1294342 1294342 C A TERT Missense_Mutation p.G220V 0.20 tolerated(0.07) benign(0.307) TCGA-55-8506-01 5 1318499 1318499 C T CLPTM1L Silent p.A534A 0.07 TCGA-55-8506-01 5 133308482 133308482 C G VDAC1 Missense_Mutation p.G278R 0.43 tolerated(0.09) benign(0.161) TCGA-55-8506-01 5 134785062 134785062 G T TIFAB 3'UTR 0.17 TCGA-55-8506-01 5 135693011 135693011 C A TRPC7 Missense_Mutation p.R22L 0.37 deleterious(0) probably_damaging(0.937) TCGA-55-8506-01 5 137520331 137520331 A C KIF20A Missense_Mutation p.E550A 0.21 deleterious(0.04) benign(0.06) TCGA-55-8506-01 5 138643878 138643878 C - MATR3 Frame_Shift_Del p.L260Yfs*152 0.34 TCGA-55-8506-01 5 13916564 13916564 G T DNAH5 Missense_Mutation p.L364I 0.17 benign(0) TCGA-55-8506-01 5 139947246 139947246 C T SLC35A4 Silent p.P164P 0.26 TCGA-55-8506-01 5 140188390 140188390 G C PCDHA4 Missense_Mutation p.A540P 0.50 deleterious_low_confidence(0) possibly_damaging(0.756) TCGA-55-8506-01 5 140554737 140554737 C A PCDHB7 Missense_Mutation p.P774H 0.12 tolerated_low_confidence(0.19) benign(0.004) TCGA-55-8506-01 5 140558148 140558148 A G PCDHB8 Missense_Mutation p.Y178C 0.18 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-55-8506-01 5 140594255 140594255 G C PCDHB13 Missense_Mutation p.S187T 0.57 tolerated_low_confidence(0.15) benign(0.013) TCGA-55-8506-01 5 140605021 140605021 C T PCDHB14 Silent p.G648G 0.16 TCGA-55-8506-01 5 140782686 140782686 C A PCDHGA9 Missense_Mutation p.P56H 0.30 deleterious_low_confidence(0.01) benign(0.371) TCGA-55-8506-01 5 140784028 140784028 C T PCDHGA9 Silent p.T503T 0.39 TCGA-55-8506-01 5 140812476 140812476 G T PCDHGA12 Missense_Mutation p.R717L 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.644) TCGA-55-8506-01 5 141021280 141021280 G A FCHSD1 Nonsense_Mutation p.R666* 0.15 TCGA-55-8506-01 5 145719248 145719248 G A POU4F3 Silent p.V86V 0.23 TCGA-55-8506-01 5 145883527 145883529 AGA - TCERG1 In_Frame_Del p.E898del 0.20 TCGA-55-8506-01 5 14601150 14601150 T A FAM105A Missense_Mutation p.F47L 0.04 tolerated(0.66) benign(0.001) TCGA-55-8506-01 5 14609046 14609046 T C FAM105A Missense_Mutation p.S273P 0.05 deleterious(0) possibly_damaging(0.558) TCGA-55-8506-01 5 147443588 147443588 C T SPINK5 5'UTR 0.16 TCGA-55-8506-01 5 147549355 147549355 A G SPINK14 Silent p.L20L 0.70 TCGA-55-8506-01 5 149212401 149212401 G T PPARGC1B Silent p.P255P 0.36 TCGA-55-8506-01 5 149449796 149449796 C A CSF1R Missense_Mutation p.G423V 0.26 deleterious(0) probably_damaging(1) TCGA-55-8506-01 5 149514548 149514548 G C PDGFRB Silent p.A132A 0.41 TCGA-55-8506-01 5 149681814 149681814 G T ARSI Silent p.A41A 0.38 TCGA-55-8506-01 5 150071205 150071205 T C RBM22 3'UTR 0.08 TCGA-55-8506-01 5 156514117 156514117 G T HAVCR2 Missense_Mutation p.P301Q 0.48 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-55-8506-01 5 156514118 156514118 G T HAVCR2 Missense_Mutation p.P301T 0.50 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-55-8506-01 5 156589499 156589499 C G FAM71B Missense_Mutation p.E593Q 0.43 deleterious(0.02) benign(0.373) TCGA-55-8506-01 5 156921727 156921727 G T ADAM19 Missense_Mutation p.D557E 0.33 deleterious(0) possibly_damaging(0.831) TCGA-55-8506-01 5 158589983 158589984 - A RNF145 Frame_Shift_Ins p.W439Lfs*29 0.16 TCGA-55-8506-01 5 15936788 15936788 C T FBXL7 Silent p.C323C 0.06 TCGA-55-8506-01 5 162917426 162917426 A - HMMR Frame_Shift_Del p.K667Nfs*11 0.37 TCGA-55-8506-01 5 168098271 168098271 G A SLIT3 Silent p.C1353C 0.24 TCGA-55-8506-01 5 169468088 169468088 T A DOCK2 Missense_Mutation p.L1232Q 0.42 deleterious(0.01) possibly_damaging(0.709) TCGA-55-8506-01 5 171765622 171765622 G A SH3PXD2B Silent p.T829T 0.37 TCGA-55-8506-01 5 172755201 172755201 C T STC2 5'UTR 0.44 TCGA-55-8506-01 5 174869841 174869841 C A DRD1 Missense_Mutation p.G88C 0.41 deleterious(0) probably_damaging(1) TCGA-55-8506-01 5 175111218 175111219 - A HRH2 Frame_Shift_Ins p.S329Kfs*148 0.33 TCGA-55-8506-01 5 176827188 176827188 G A PFN3 Silent p.R130R 0.14 TCGA-55-8506-01 5 178413314 178413314 G T GRM6 Silent p.A647A 0.45 TCGA-55-8506-01 5 178418432 178418432 C A GRM6 Missense_Mutation p.D284Y 0.41 deleterious(0) probably_damaging(0.997) TCGA-55-8506-01 5 178489073 178489073 G A ZNF354C Missense_Mutation p.A2T 0.09 tolerated(0.19) probably_damaging(0.992) TCGA-55-8506-01 5 178699972 178699972 C A ADAMTS2 Missense_Mutation p.V210L 0.52 deleterious(0.01) possibly_damaging(0.734) TCGA-55-8506-01 5 179150667 179150667 G A CANX Missense_Mutation p.V469I 0.20 tolerated(0.46) benign(0.022) TCGA-55-8506-01 5 179991505 179991505 G T CNOT6 Missense_Mutation p.Q134H 0.37 tolerated(0.12) benign(0.02) TCGA-55-8506-01 5 179991506 179991506 G T CNOT6 Missense_Mutation p.D135Y 0.36 deleterious(0.01) benign(0.27) TCGA-55-8506-01 5 21752205 21752205 C A CDH12 Missense_Mutation p.G676W 0.16 deleterious(0) probably_damaging(1) TCGA-55-8506-01 5 22078722 22078722 G T CDH12 Missense_Mutation p.P22T 0.07 tolerated(0.08) possibly_damaging(0.57) TCGA-55-8506-01 5 24509739 24509739 C A CDH10 Nonsense_Mutation p.E398* 0.36 TCGA-55-8506-01 5 251128 251128 G A SDHA Missense_Mutation p.V525M 0.07 deleterious_low_confidence(0.02) possibly_damaging(0.901) TCGA-55-8506-01 5 2749778 2749778 C G IRX2 Missense_Mutation p.A125P 0.10 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 5 31799248 31799248 A T PDZD2 5'UTR 0.29 TCGA-55-8506-01 5 31799453 31799453 G C PDZD2 Missense_Mutation p.R33P 0.15 deleterious(0) probably_damaging(1) TCGA-55-8506-01 5 31799653 31799653 C T PDZD2 Missense_Mutation p.R100C 0.06 deleterious(0) probably_damaging(1) TCGA-55-8506-01 5 33549431 33549431 G T ADAMTS12 Silent p.R1395R 0.17 TCGA-55-8506-01 5 33891997 33891997 T - ADAMTS12 5'UTR 0.35 TCGA-55-8506-01 5 33938099 33938099 C G RXFP3 Missense_Mutation p.F418L 0.21 tolerated(0.11) benign(0.017) TCGA-55-8506-01 5 35065958 35065958 G - PRLR Frame_Shift_Del p.Q368Rfs*30 0.20 TCGA-55-8506-01 5 35654721 35654721 A - SPEF2 Frame_Shift_Del p.I293Sfs*23 0.09 TCGA-55-8506-01 5 35763770 35763770 C T SPEF2 Missense_Mutation p.T1256I 0.24 tolerated(0.06) possibly_damaging(0.612) TCGA-55-8506-01 5 35795804 35795804 G T SPEF2 Splice_Site p.X1580_splice 0.19 TCGA-55-8506-01 5 35921166 35921166 G T CAPSL Silent p.L19L 0.26 TCGA-55-8506-01 5 35991346 35991346 C A UGT3A1 5'UTR 0.19 TCGA-55-8506-01 5 3599696 3599696 G T IRX1 Missense_Mutation p.G212C 0.07 deleterious(0) probably_damaging(0.94) TCGA-55-8506-01 5 36152305 36152305 G T SKP2 5'UTR 0.14 TCGA-55-8506-01 5 37379412 37379412 G A WDR70 5'UTR 0.09 TCGA-55-8506-01 5 38885506 38885506 G A OSMR Silent p.L253L 0.07 TCGA-55-8506-01 5 40681530 40681530 G A PTGER4 Silent p.A145A 0.07 TCGA-55-8506-01 5 41195894 41195894 C A C6 Missense_Mutation p.G196V 0.28 deleterious(0) probably_damaging(1) TCGA-55-8506-01 5 42711437 42711437 A C GHR Silent p.V249V 0.12 TCGA-55-8506-01 5 43292707 43292707 G C HMGCS1 Missense_Mutation p.L448V 0.05 deleterious(0.01) possibly_damaging(0.903) TCGA-55-8506-01 5 5190086 5190086 A G ADAMTS16 Silent p.P350P 0.18 TCGA-55-8506-01 5 54281295 54281295 C T ESM1 Silent p.V17V 0.50 TCGA-55-8506-01 5 54721792 54721792 C T PPAP2A Missense_Mutation p.V210I 0.17 tolerated(0.47) benign(0.038) TCGA-55-8506-01 5 55179017 55179017 C A IL31RA Silent p.T200T 0.46 TCGA-55-8506-01 5 65073271 65073271 G A NLN Silent p.G156G 0.60 TCGA-55-8506-01 5 6746473 6746473 G T PAPD7 Missense_Mutation p.E214D 0.19 tolerated(0.15) benign(0.155) TCGA-55-8506-01 5 68728790 68728790 A G MARVELD2 Missense_Mutation p.Y458C 0.45 deleterious(0) probably_damaging(0.998) TCGA-55-8506-01 5 75913955 75913955 G T F2RL2 Missense_Mutation p.L193M 0.43 tolerated(0.22) possibly_damaging(0.562) TCGA-55-8506-01 5 75919062 75919062 G T F2RL2 5'UTR 0.44 TCGA-55-8506-01 5 76788099 76788099 C T WDR41 5'UTR 0.41 TCGA-55-8506-01 5 7717281 7717281 A T ADCY2 Missense_Mutation p.Q545L 0.08 tolerated(0.05) benign(0.021) TCGA-55-8506-01 5 78378654 78378654 C T BHMT2 Missense_Mutation p.A158V 0.48 deleterious(0.03) benign(0.133) TCGA-55-8506-01 5 86685290 86685290 C T RASA1 Silent p.C1002C 0.06 TCGA-55-8506-01 5 90667151 90667151 C T ARRDC3 3'UTR 0.56 TCGA-55-8506-01 5 908488 908488 G T TRIP13 Missense_Mutation p.A260S 0.65 deleterious(0.03) benign(0.028) TCGA-55-8506-01 5 94024355 94024355 G A ANKRD32 Missense_Mutation p.E756K 0.22 tolerated(1) benign(0.013) TCGA-55-8506-01 5 96253359 96253359 C A ERAP2 3'UTR 0.44 TCGA-55-8506-01 6 107232061 107232061 T C MIR587 RNA 0.40 TCGA-55-8506-01 6 107955764 107955764 G T SOBP Silent p.A572A 0.36 TCGA-55-8506-01 6 112671606 112671606 T C RFPL4B Silent p.H232H 0.24 TCGA-55-8506-01 6 118475641 118475641 G T SLC35F1 Silent p.V69V 0.44 TCGA-55-8506-01 6 12933902 12933902 G A PHACTR1 Missense_Mutation p.M96I 0.11 unknown(0) TCGA-55-8506-01 6 131921227 131921227 G T MED23 Missense_Mutation p.P724H 0.20 deleterious(0) probably_damaging(0.969) TCGA-55-8506-01 6 134496012 134496012 C G SGK1 Intron 0.47 TCGA-55-8506-01 6 139229850 139229850 G A REPS1 Missense_Mutation p.T723M 0.56 deleterious(0.01) probably_damaging(0.961) TCGA-55-8506-01 6 142725013 142725013 G A GPR126 Missense_Mutation p.R677Q 0.19 tolerated(0.25) benign(0.008) TCGA-55-8506-01 6 143092507 143092507 C T HIVEP2 Silent p.P1123P 0.16 TCGA-55-8506-01 6 147830241 147830241 G A SAMD5 Silent p.V59V 0.50 TCGA-55-8506-01 6 149854650 149854650 C G PPIL4 Missense_Mutation p.V208L 0.46 tolerated(0.8) benign(0.011) TCGA-55-8506-01 6 150067624 150067624 T C NUP43 Missense_Mutation p.E3G 0.43 tolerated(0.17) benign(0.002) TCGA-55-8506-01 6 151277173 151277173 G T MTHFD1L Missense_Mutation p.G590V 0.48 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 6 152265351 152265351 G T ESR1 Missense_Mutation p.K268N 0.39 tolerated(0.08) benign(0.119) TCGA-55-8506-01 6 152623052 152623052 C A SYNE1 Silent p.L5831L 0.31 TCGA-55-8506-01 6 153078257 153078257 C A VIP Missense_Mutation p.P165Q 0.68 tolerated_low_confidence(0.23) possibly_damaging(0.448) TCGA-55-8506-01 6 155764457 155764457 C A NOX3 Missense_Mutation p.G146C 0.40 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 6 158957859 158957859 G A TMEM181 Silent p.K127K 0.32 TCGA-55-8506-01 6 160666477 160666477 T C SLC22A2 Missense_Mutation p.Y353C 0.20 deleterious(0) probably_damaging(0.991) TCGA-55-8506-01 6 161085245 161085245 A G LPA Translation_Start_Site p.M1? 0.41 deleterious_low_confidence(0) benign(0.006) TCGA-55-8506-01 6 170599282 170599282 G C DLL1 5'UTR 0.60 TCGA-55-8506-01 6 25762171 25762171 C A SLC17A4 5'UTR 0.30 TCGA-55-8506-01 6 25983574 25983574 G T TRIM38 Missense_Mutation p.V353F 0.41 tolerated(0.09) probably_damaging(0.997) TCGA-55-8506-01 6 27100252 27100252 C G HIST1H2BJ Missense_Mutation p.R93T 0.30 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-55-8506-01 6 28971829 28971829 T G ZNF311 5'UTR 0.12 TCGA-55-8506-01 6 30139658 30139658 G A TRIM15 Silent p.S310S 0.25 TCGA-55-8506-01 6 30522381 30522381 C T GNL1 Missense_Mutation p.V191I 0.15 tolerated(0.6) benign(0.011) TCGA-55-8506-01 6 3077024 3077024 A G RIPK1 5'UTR 0.44 TCGA-55-8506-01 6 30919715 30919715 G A DPCR1 Silent p.K1158K 0.47 TCGA-55-8506-01 6 31079509 31079509 C T C6orf15 Nonsense_Mutation p.W209* 0.57 TCGA-55-8506-01 6 31498831 31498831 C T DDX39B Missense_Mutation p.R374Q 0.07 deleterious(0) probably_damaging(0.947) TCGA-55-8506-01 6 31602529 31602529 G T PRRC2A Splice_Site p.X1646_splice 0.10 TCGA-55-8506-01 6 31602685 31602685 T G PRRC2A Silent p.P1697P 0.41 TCGA-55-8506-01 6 32261734 32261734 G T C6orf10 Missense_Mutation p.T239N 0.24 deleterious(0) probably_damaging(0.991) TCGA-55-8506-01 6 3284173 3284173 G A SLC22A23 Missense_Mutation p.A539V 0.23 tolerated(0.5) benign(0.21) TCGA-55-8506-01 6 33374260 33374260 C T KIFC1 Silent p.N608N 0.10 TCGA-55-8506-01 6 33657961 33657961 T C ITPR3 Missense_Mutation p.F2340L 0.34 deleterious(0.03) probably_damaging(0.966) TCGA-55-8506-01 6 35107832 35107832 G T TCP11 Intron 0.11 TCGA-55-8506-01 6 39282717 39282717 C A KCNK16 3'UTR 0.27 TCGA-55-8506-01 6 41773703 41773703 C T USP49 Missense_Mutation p.R340Q 0.26 tolerated(0.19) benign(0.018) TCGA-55-8506-01 6 42797495 42797495 G T GLTSCR1L Missense_Mutation p.G475V 0.32 deleterious(0) probably_damaging(1) TCGA-55-8506-01 6 43011247 43011250 GTGA - CUL7 Frame_Shift_Del p.H1182Cfs*42 0.12 TCGA-55-8506-01 6 43030855 43030855 G A KLC4 Silent p.L171L 0.28 TCGA-55-8506-01 6 43230705 43230705 G T TTBK1 Nonsense_Mutation p.E535* 0.22 TCGA-55-8506-01 6 43473214 43473214 C T TJAP1 Missense_Mutation p.T432I 0.16 deleterious(0) possibly_damaging(0.502) TCGA-55-8506-01 6 43646287 43646287 G A MRPS18A Missense_Mutation p.R74C 0.27 deleterious(0) probably_damaging(0.973) TCGA-55-8506-01 6 47779441 47779441 T A OPN5 Missense_Mutation p.S344T 0.22 tolerated_low_confidence(0.58) benign(0.002) TCGA-55-8506-01 6 48036047 48036047 G C PTCHD4 Missense_Mutation p.I115M 0.15 deleterious(0) benign(0.178) TCGA-55-8506-01 6 50011434 50011434 C T DEFB112 Missense_Mutation p.D66N 0.32 tolerated(0.17) benign(0.117) TCGA-55-8506-01 6 50686841 50686841 C A TFAP2D Silent p.G192G 0.20 TCGA-55-8506-01 6 52147593 52147593 G T MCM3 Silent p.S131S 0.14 TCGA-55-8506-01 6 52368025 52368025 G T TRAM2 Silent p.S361S 0.21 TCGA-55-8506-01 6 52661068 52661068 C A GSTA1 Missense_Mutation p.G62W 0.41 deleterious(0) probably_damaging(0.958) TCGA-55-8506-01 6 54214648 54214648 C A TINAG Missense_Mutation p.S345Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 6 55935559 55935559 C A COL21A1 Missense_Mutation p.G668V 0.29 deleterious(0) probably_damaging(0.993) TCGA-55-8506-01 6 56336886 56336886 G A DST Missense_Mutation p.L4754F 0.14 probably_damaging(1) TCGA-55-8506-01 6 56347480 56347480 C G DST Splice_Site p.X4511_splice 0.25 TCGA-55-8506-01 6 56362758 56362760 CTT - DST In_Frame_Del p.E4040del 0.09 TCGA-55-8506-01 6 56516011 56516011 C A DST Missense_Mutation p.V205F 0.16 possibly_damaging(0.616) TCGA-55-8506-01 6 56880051 56880051 C T BEND6 Missense_Mutation p.S140L 0.12 tolerated_low_confidence(0.26) possibly_damaging(0.885) TCGA-55-8506-01 6 6225019 6225019 C T F13A1 Silent p.S291S 0.24 TCGA-55-8506-01 6 64421916 64421916 G T PHF3 Missense_Mutation p.G1478C 0.22 deleterious(0) possibly_damaging(0.866) TCGA-55-8506-01 6 71212362 71212362 G - FAM135A Frame_Shift_Del p.A300Qfs*4 0.27 TCGA-55-8506-01 6 76728498 76728498 C A IMPG1 Missense_Mutation p.K248N 0.38 tolerated(0.08) benign(0.272) TCGA-55-8506-01 6 82950120 82950120 C A IBTK Silent p.G28G 0.53 TCGA-55-8506-01 6 84233349 84233349 C T PRSS35 Silent p.G63G 0.38 TCGA-55-8506-01 6 87725998 87725998 C A HTR1E Missense_Mutation p.L316M 0.42 deleterious(0.01) possibly_damaging(0.877) TCGA-55-8506-01 6 90340611 90340611 G A ANKRD6 Missense_Mutation p.R691Q 0.16 tolerated(0.15) benign(0.048) TCGA-55-8506-01 7 100282211 100282211 C A GIGYF1 Missense_Mutation p.E497D 0.13 deleterious(0.03) unknown(0) TCGA-55-8506-01 7 100363024 100363024 C A ZAN Nonsense_Mutation p.C1439* 0.42 TCGA-55-8506-01 7 100371106 100371106 C A ZAN Missense_Mutation p.S1875Y 0.47 unknown(0) TCGA-55-8506-01 7 100674949 100674949 T C MUC17 Silent p.S84S 0.50 TCGA-55-8506-01 7 100683692 100683692 G T MUC17 Missense_Mutation p.V2999L 0.47 benign(0.031) TCGA-55-8506-01 7 101952130 101952130 A C SH2B2 Missense_Mutation p.I332L 0.43 tolerated(0.06) benign(0.127) TCGA-55-8506-01 7 102040058 102040058 A T PRKRIP1 Missense_Mutation p.Y90F 0.09 deleterious(0) possibly_damaging(0.457) TCGA-55-8506-01 7 102079624 102079624 C T ORAI2 Missense_Mutation p.A74V 0.22 deleterious(0) probably_damaging(0.983) TCGA-55-8506-01 7 102604004 102604004 G T FBXL13 Silent p.R234R 0.08 TCGA-55-8506-01 7 103061308 103061308 T - SLC26A5 Frame_Shift_Del p.I57* 0.12 TCGA-55-8506-01 7 103230083 103230083 T A RELN Missense_Mutation p.T1369S 0.42 deleterious(0.04) possibly_damaging(0.49) TCGA-55-8506-01 7 107262517 107262517 A G BCAP29 3'UTR 0.39 TCGA-55-8506-01 7 107323740 107323740 G T SLC26A4 Nonsense_Mutation p.E287* 0.40 TCGA-55-8506-01 7 107431609 107431609 G T SLC26A3 Missense_Mutation p.R152S 0.46 tolerated(0.27) benign(0) TCGA-55-8506-01 7 107556053 107556053 C T DLD Missense_Mutation p.R263C 0.09 deleterious(0.02) probably_damaging(0.923) TCGA-55-8506-01 7 107748248 107748248 G C LAMB4 Missense_Mutation p.A140G 0.50 deleterious(0) probably_damaging(0.998) TCGA-55-8506-01 7 113519960 113519960 G C PPP1R3A Nonsense_Mutation p.S396* 0.43 TCGA-55-8506-01 7 11675919 11675919 C G THSD7A Missense_Mutation p.R287P 0.14 tolerated(0.11) possibly_damaging(0.81) TCGA-55-8506-01 7 120455809 120455809 C T TSPAN12 Missense_Mutation p.V112I 0.25 tolerated(0.24) possibly_damaging(0.718) TCGA-55-8506-01 7 121671535 121671535 C T PTPRZ1 Silent p.V1696V 0.15 TCGA-55-8506-01 7 122338380 122338380 G A RNF133 Missense_Mutation p.T198I 0.22 deleterious(0.05) benign(0.01) TCGA-55-8506-01 7 122338491 122338491 G A RNF133 Missense_Mutation p.T161M 0.44 tolerated(1) benign(0.019) TCGA-55-8506-01 7 126173566 126173566 C A GRM8 Missense_Mutation p.V624L 0.51 tolerated(0.1) benign(0.048) TCGA-55-8506-01 7 127222280 127222280 T A GCC1 Missense_Mutation p.I706F 0.17 deleterious(0.01) possibly_damaging(0.467) TCGA-55-8506-01 7 128312492 128312492 C T FAM71F2 Missense_Mutation p.P14L 0.50 tolerated(0.06) benign(0.396) TCGA-55-8506-01 7 128484762 128484762 G A FLNC Silent p.A1081A 0.18 TCGA-55-8506-01 7 128503116 128503116 G T ATP6V1F Missense_Mutation p.R53L 0.37 deleterious(0.02) probably_damaging(0.913) TCGA-55-8506-01 7 135078972 135078972 T G CNOT4 Missense_Mutation p.H442P 0.48 deleterious(0.03) probably_damaging(0.965) TCGA-55-8506-01 7 135322681 135322681 C T NUP205 Silent p.R1713R 0.13 TCGA-55-8506-01 7 136587920 136587920 C A CHRM2 Intron 0.14 TCGA-55-8506-01 7 138333799 138333799 G A SVOPL Silent p.R206R 0.17 TCGA-55-8506-01 7 139724304 139724304 C T PARP12 3'UTR 0.36 TCGA-55-8506-01 7 140549911 140549911 C A BRAF Missense_Mutation p.E80D 0.12 tolerated(0.13) benign(0.078) TCGA-55-8506-01 7 140549912 140549912 T C BRAF Missense_Mutation p.E80G 0.11 tolerated(0.05) possibly_damaging(0.51) TCGA-55-8506-01 7 141645175 141645175 G C CLEC5A Missense_Mutation p.N35K 0.18 deleterious(0.02) benign(0.131) TCGA-55-8506-01 7 142563321 142563322 - T EPHB6 Frame_Shift_Ins p.V347Cfs*33 0.28 TCGA-55-8506-01 7 142563378 142563378 C T EPHB6 Silent p.P365P 0.38 TCGA-55-8506-01 7 142573633 142573633 G A TRPV6 Missense_Mutation p.R263W 0.50 deleterious(0.03) benign(0.047) TCGA-55-8506-01 7 142622712 142622712 G T TRPV5 Missense_Mutation p.T345K 0.42 deleterious(0.01) benign(0.081) TCGA-55-8506-01 7 142724119 142724119 T C OR9A2 Missense_Mutation p.Y34C 0.44 deleterious(0) probably_damaging(0.968) TCGA-55-8506-01 7 142965961 142965961 A - GSTK1 3'UTR 0.34 TCGA-55-8506-01 7 142983845 142983845 C - TMEM139 Frame_Shift_Del p.P193Lfs*26 0.12 TCGA-55-8506-01 7 143044019 143044019 G T CLCN1 Missense_Mutation p.V794L 0.48 tolerated(0.35) benign(0.013) TCGA-55-8506-01 7 143054034 143054034 G T FAM131B Missense_Mutation p.A231D 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 7 143175319 143175319 C A TAS2R41 Silent p.T118T 0.44 TCGA-55-8506-01 7 148801757 148801757 G A ZNF425 Silent p.D402D 0.12 TCGA-55-8506-01 7 149420020 149420020 C A KRBA1 Missense_Mutation p.L249M 0.47 tolerated(0.13) probably_damaging(0.983) TCGA-55-8506-01 7 149426299 149426299 G A KRBA1 Missense_Mutation p.E550K 0.16 deleterious(0.01) benign(0.062) TCGA-55-8506-01 7 149515067 149515067 G A SSPO RNA 0.18 TCGA-55-8506-01 7 150033932 150033932 C T LRRC61 5'UTR 0.45 TCGA-55-8506-01 7 150217559 150217559 C A GIMAP7 Missense_Mutation p.A166D 0.14 deleterious(0) probably_damaging(0.993) TCGA-55-8506-01 7 150325329 150325329 G A GIMAP6 Silent p.S119S 0.13 TCGA-55-8506-01 7 150643983 150643983 G T KCNH2 Silent p.T1104T 0.12 TCGA-55-8506-01 7 150720172 150720172 G - ATG9B Frame_Shift_Del p.L261Cfs*64 0.13 TCGA-55-8506-01 7 150945725 150945725 C T SMARCD3 5'UTR 0.48 TCGA-55-8506-01 7 154876292 154876292 G A HTR5A 3'UTR 0.47 TCGA-55-8506-01 7 156974894 156974894 C T UBE3C Missense_Mutation p.A288V 0.17 tolerated(0.56) benign(0) TCGA-55-8506-01 7 157926752 157926752 C A PTPRN2 Splice_Site p.X392_splice 0.44 TCGA-55-8506-01 7 158580784 158580784 T A ESYT2 Missense_Mutation p.I268F 0.10 deleterious(0.01) benign(0.041) TCGA-55-8506-01 7 158580785 158580785 C A ESYT2 Splice_Site p.X268_splice 0.10 TCGA-55-8506-01 7 20784879 20784879 G T ABCB5 Nonsense_Mutation p.E1083* 0.35 TCGA-55-8506-01 7 21639563 21639564 - T DNAH11 Frame_Shift_Ins p.Q945Sfs*10 0.26 TCGA-55-8506-01 7 21639598 21639598 A T DNAH11 Missense_Mutation p.E954V 0.13 benign(0.098) TCGA-55-8506-01 7 21932145 21932145 C T DNAH11 Missense_Mutation p.P4211S 0.51 probably_damaging(1) TCGA-55-8506-01 7 23809339 23809339 G T STK31 Missense_Mutation p.E559D 0.44 tolerated(0.15) benign(0.053) TCGA-55-8506-01 7 27135330 27135330 G T HOXA1 Missense_Mutation p.H68N 0.62 tolerated(0.45) benign(0.199) TCGA-55-8506-01 7 27142065 27142065 C T HOXA2 Missense_Mutation p.A19T 0.10 deleterious(0) probably_damaging(0.998) TCGA-55-8506-01 7 27147827 27147827 G T HOXA3 Missense_Mutation p.H347N 0.45 deleterious(0.02) benign(0.253) TCGA-55-8506-01 7 27212969 27212969 C A HOXA10 Silent p.L319L 0.10 TCGA-55-8506-01 7 27239030 27239030 A T HOXA13 Missense_Mutation p.S223T 0.51 tolerated(0.08) benign(0.268) TCGA-55-8506-01 7 27565903 27565903 C A HIBADH Missense_Mutation p.C314F 0.46 deleterious(0.03) possibly_damaging(0.774) TCGA-55-8506-01 7 30084792 30084792 A G PLEKHA8 Missense_Mutation p.I44M 0.14 deleterious(0) probably_damaging(1) TCGA-55-8506-01 7 31683098 31683098 C A CCDC129 Missense_Mutation p.S731Y 0.08 deleterious(0.01) probably_damaging(0.989) TCGA-55-8506-01 7 31735133 31735133 A G PPP1R17 Missense_Mutation p.R45G 0.06 deleterious_low_confidence(0.02) benign(0.132) TCGA-55-8506-01 7 31864568 31864568 G T PDE1C Missense_Mutation p.T500N 0.63 tolerated(0.05) probably_damaging(1) TCGA-55-8506-01 7 38433714 38433714 G T AMPH Missense_Mutation p.P500H 0.29 deleterious(0) possibly_damaging(0.738) TCGA-55-8506-01 7 38908748 38908748 T G VPS41 Missense_Mutation p.K56Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 7 39606093 39606093 G A YAE1D1 Missense_Mutation p.E26K 0.26 deleterious(0.02) benign(0.063) TCGA-55-8506-01 7 44251864 44251864 T C YKT6 Missense_Mutation p.C194R 0.16 deleterious(0) probably_damaging(0.995) TCGA-55-8506-01 7 45015169 45015169 T A MYO1G Missense_Mutation p.S160C 0.41 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 7 48033935 48033935 C A SUN3 Missense_Mutation p.A280S 0.40 deleterious(0.01) probably_damaging(0.99) TCGA-55-8506-01 7 48327585 48327585 G T ABCA13 Missense_Mutation p.L2955F 0.44 benign(0.215) TCGA-55-8506-01 7 50121398 50121398 C T ZPBP Nonsense_Mutation p.W102* 0.08 TCGA-55-8506-01 7 53103485 53103485 C T POM121L12 Nonsense_Mutation p.Q41* 0.13 TCGA-55-8506-01 7 54610494 54610494 C T VSTM2A Missense_Mutation p.S24F 0.41 deleterious(0.02) possibly_damaging(0.529) TCGA-55-8506-01 7 55259515 55259515 T G EGFR Missense_Mutation p.L858R 0.47 deleterious(0) probably_damaging(1) TCGA-55-8506-01 7 57528666 57528666 G T ZNF716 Missense_Mutation p.G167C 0.44 deleterious(0.02) probably_damaging(0.944) TCGA-55-8506-01 7 57528838 57528838 G A ZNF716 Missense_Mutation p.C224Y 0.28 tolerated(0.84) benign(0.003) TCGA-55-8506-01 7 57528885 57528885 C A ZNF716 Missense_Mutation p.P240T 0.32 deleterious(0.01) possibly_damaging(0.556) TCGA-55-8506-01 7 6085729 6085729 C T EIF2AK1 Silent p.K201K 0.24 TCGA-55-8506-01 7 72430731 72430731 G A TRIM74 Missense_Mutation p.R183C 0.27 deleterious(0) possibly_damaging(0.453) TCGA-55-8506-01 7 72734169 72734169 C A TRIM50 Missense_Mutation p.V158L 0.42 tolerated(0.61) benign(0.062) TCGA-55-8506-01 7 72738530 72738530 G C TRIM50 Missense_Mutation p.P86A 0.09 tolerated_low_confidence(0.09) benign(0.163) TCGA-55-8506-01 7 7278082 7278082 C T C1GALT1 Silent p.G139G 0.12 TCGA-55-8506-01 7 72892218 72892218 G A BAZ1B Missense_Mutation p.R525C 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 7 73008133 73008133 A T MLXIPL 3'UTR 0.14 TCGA-55-8506-01 7 73731996 73731996 A T CLIP2 Missense_Mutation p.E40D 0.47 tolerated(0.14) benign(0.358) TCGA-55-8506-01 7 73790270 73790270 C A CLIP2 Silent p.T513T 0.30 TCGA-55-8506-01 7 75145081 75145081 C A Y_RNA 5'Flank 0.35 TCGA-55-8506-01 7 75695676 75695676 A G MDH2 Missense_Mutation p.E322G 0.16 deleterious(0.02) probably_damaging(0.971) TCGA-55-8506-01 7 79082336 79082336 C T MAGI2 Missense_Mutation p.G101R 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-55-8506-01 7 80378225 80378225 T A SEMA3C Missense_Mutation p.R611W 0.15 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 7 80458049 80458049 G C SEMA3C Missense_Mutation p.T39S 0.13 tolerated(0.7) benign(0.017) TCGA-55-8506-01 7 81599239 81599239 G T CACNA2D1 Missense_Mutation p.L756I 0.39 deleterious(0) probably_damaging(0.998) TCGA-55-8506-01 7 81746400 81746400 C A CACNA2D1 Missense_Mutation p.Q162H 0.13 deleterious(0) possibly_damaging(0.88) TCGA-55-8506-01 7 82544822 82544822 T - PCLO Frame_Shift_Del p.K4160Nfs*36 0.14 TCGA-55-8506-01 7 82784328 82784328 C A PCLO Missense_Mutation p.Q543H 0.16 benign(0.387) TCGA-55-8506-01 7 8475356 8475356 T C NXPH1 Missense_Mutation p.C5R 0.45 tolerated(0.88) benign(0.001) TCGA-55-8506-01 7 86415817 86415817 C A GRM3 Missense_Mutation p.R237S 0.48 tolerated(0.73) probably_damaging(0.956) TCGA-55-8506-01 7 86537766 86537766 T C KIAA1324L Missense_Mutation p.Y818C 0.44 deleterious(0) probably_damaging(0.979) TCGA-55-8506-01 7 86544070 86544070 C G KIAA1324L Missense_Mutation p.W567S 0.22 deleterious(0) probably_damaging(0.976) TCGA-55-8506-01 7 881655 881655 C A SUN1 Silent p.S113S 0.53 TCGA-55-8506-01 7 91603032 91603032 A T AKAP9 Missense_Mutation p.Q19L 0.13 possibly_damaging(0.72) TCGA-55-8506-01 7 91709255 91709255 C G AKAP9 Missense_Mutation p.A2603G 0.14 benign(0.036) TCGA-55-8506-01 7 95775912 95775912 C A SLC25A13 Missense_Mutation p.A471S 0.37 deleterious(0) possibly_damaging(0.722) TCGA-55-8506-01 7 97614228 97614228 G T OCM2 3'UTR 0.21 TCGA-55-8506-01 7 97617751 97617751 C A OCM2 Silent p.G57G 0.15 TCGA-55-8506-01 7 98257789 98257789 G A NPTX2 Missense_Mutation p.V382I 0.50 tolerated(0.26) benign(0.034) TCGA-55-8506-01 7 98449125 98449125 C A TMEM130 Missense_Mutation p.G309W 0.50 deleterious(0) probably_damaging(1) TCGA-55-8506-01 7 98574281 98574281 G A TRRAP Missense_Mutation p.R2705Q 0.13 benign(0.149) TCGA-55-8506-01 7 98574333 98574333 G T TRRAP Missense_Mutation p.Q2722H 0.10 benign(0.002) TCGA-55-8506-01 7 98576479 98576479 C T TRRAP Silent p.C2855C 0.49 TCGA-55-8506-01 7 99017596 99017596 G A ATP5J2-PTCD1 Silent p.G748G 0.10 TCGA-55-8506-01 7 99032515 99032515 C G ATP5J2-PTCD1 Silent p.R166R 0.43 TCGA-55-8506-01 7 99361602 99361602 A G CYP3A4 Missense_Mutation p.I301T 0.42 tolerated(0.1) possibly_damaging(0.67) TCGA-55-8506-01 7 99698981 99698981 G T MCM7 5'UTR 0.47 TCGA-55-8506-01 7 99818184 99818184 C T PVRIG Missense_Mutation p.P162S 0.45 tolerated(0.11) probably_damaging(0.932) TCGA-55-8506-01 7 99971280 99971281 - T PILRA Frame_Shift_Ins p.M1? 0.32 TCGA-55-8506-01 8 101937183 101937183 G A YWHAZ Missense_Mutation p.R127C 0.32 deleterious_low_confidence(0.03) benign(0.245) TCGA-55-8506-01 8 103354709 103354709 G A UBR5 Missense_Mutation p.P364S 0.26 tolerated(0.11) probably_damaging(0.953) TCGA-55-8506-01 8 104452493 104452493 G T DCAF13 Missense_Mutation p.L512F 0.29 deleterious(0.02) probably_damaging(0.962) TCGA-55-8506-01 8 10555134 10555134 G T C8orf74 Silent p.T89T 0.37 TCGA-55-8506-01 8 109796744 109796744 G T TMEM74 Missense_Mutation p.S195Y 0.35 deleterious(0) probably_damaging(0.991) TCGA-55-8506-01 8 110452937 110452937 A G PKHD1L1 Splice_Site p.X1319_splice 0.17 TCGA-55-8506-01 8 116426269 116426270 - T TRPS1 Frame_Shift_Ins p.N1289Kfs*5 0.39 TCGA-55-8506-01 8 120859251 120859251 G A DSCC1 Silent p.L186L 0.16 TCGA-55-8506-01 8 121219204 121219204 G A COL14A1 Silent p.G354G 0.37 TCGA-55-8506-01 8 121344423 121344423 C G COL14A1 Missense_Mutation p.P1568R 0.30 deleterious(0) probably_damaging(1) TCGA-55-8506-01 8 123965245 123965245 G A ZHX2 Missense_Mutation p.V499I 0.08 tolerated(0.21) possibly_damaging(0.606) TCGA-55-8506-01 8 124799557 124799557 G A FAM91A1 Missense_Mutation p.A379T 0.23 deleterious(0) probably_damaging(0.985) TCGA-55-8506-01 8 124810416 124810416 C T FAM91A1 Silent p.L500L 0.35 TCGA-55-8506-01 8 124989824 124989824 C T FER1L6 Silent p.I346I 0.39 TCGA-55-8506-01 8 125088523 125088523 C T FER1L6 Missense_Mutation p.R1393W 0.33 deleterious(0) probably_damaging(0.997) TCGA-55-8506-01 8 13356713 13356713 C A DLC1 Missense_Mutation p.A290S 0.47 tolerated_low_confidence(0.23) benign(0.013) TCGA-55-8506-01 8 134225326 134225326 C T WISP1 Missense_Mutation p.R97W 0.11 deleterious(0) probably_damaging(0.998) TCGA-55-8506-01 8 134474238 134474238 C A ST3GAL1 Splice_Site p.X244_splice 0.21 TCGA-55-8506-01 8 139164690 139164690 G T FAM135B Silent p.I676I 0.35 TCGA-55-8506-01 8 139165055 139165055 C T FAM135B Missense_Mutation p.D555N 0.18 deleterious(0.03) benign(0.043) TCGA-55-8506-01 8 139611104 139611104 C A COL22A1 Missense_Mutation p.G1408V 0.12 unknown(0) TCGA-55-8506-01 8 139790633 139790633 G A COL22A1 Missense_Mutation p.P574L 0.25 unknown(0) TCGA-55-8506-01 8 139833460 139833460 T A COL22A1 Silent p.L388L 0.19 TCGA-55-8506-01 8 142435183 142435183 T C PTP4A3 Silent p.R47R 0.16 TCGA-55-8506-01 8 143602246 143602246 A G BAI1 Missense_Mutation p.N995S 0.34 deleterious(0) benign(0) TCGA-55-8506-01 8 143928001 143928001 C A GML Silent p.P124P 0.40 TCGA-55-8506-01 8 144332049 144332049 G A ZFP41 Silent p.P12P 0.12 TCGA-55-8506-01 8 144810154 144810154 C G FAM83H Missense_Mutation p.A493P 0.23 tolerated(0.26) benign(0.005) TCGA-55-8506-01 8 144811424 144811424 G A FAM83H Missense_Mutation p.R173C 0.25 deleterious(0) probably_damaging(1) TCGA-55-8506-01 8 144941852 144941852 G A EPPK1 Missense_Mutation p.A1857V 0.31 benign(0.018) TCGA-55-8506-01 8 144990541 144990541 G A PLEC Missense_Mutation p.S4620F 0.40 benign(0.184) TCGA-55-8506-01 8 145150876 145150876 C - CYC1 Frame_Shift_Del p.S93Afs*161 0.28 TCGA-55-8506-01 8 145535024 145535024 C A HSF1 Silent p.I194I 0.09 TCGA-55-8506-01 8 145624249 145624249 G A CPSF1 Missense_Mutation p.R520W 0.17 deleterious(0) probably_damaging(1) TCGA-55-8506-01 8 22481545 22481545 C A BIN3 Silent p.R166R 0.46 TCGA-55-8506-01 8 27321355 27321355 C T CHRNA2 Missense_Mutation p.G202D 0.36 deleterious(0) probably_damaging(1) TCGA-55-8506-01 8 27516182 27516182 A G SCARA3 Silent p.R165R 0.07 TCGA-55-8506-01 8 2832042 2832042 G T CSMD1 Missense_Mutation p.L2891I 0.55 possibly_damaging(0.61) TCGA-55-8506-01 8 3224724 3224724 T G CSMD1 Missense_Mutation p.D982A 0.36 probably_damaging(0.999) TCGA-55-8506-01 8 36768597 36768597 G T KCNU1 Missense_Mutation p.L827F 0.42 deleterious(0.02) benign(0.132) TCGA-55-8506-01 8 37702265 37702267 CTC - BRF2 In_Frame_Del p.G334del 0.20 TCGA-55-8506-01 8 38107282 38107282 G T DDHD2 Missense_Mutation p.K435N 0.36 deleterious(0) possibly_damaging(0.845) TCGA-55-8506-01 8 38277189 38277189 T A FGFR1 Silent p.T413T 0.39 TCGA-55-8506-01 8 39792540 39792540 C T IDO2 5'UTR 0.29 TCGA-55-8506-01 8 39872815 39872815 C A IDO2 Silent p.A319A 0.09 TCGA-55-8506-01 8 55533712 55533713 - T RP1 Frame_Shift_Ins p.D64* 0.13 TCGA-55-8506-01 8 69046347 69046347 A G PREX2 Missense_Mutation p.T1274A 0.11 tolerated(1) benign(0.001) TCGA-55-8506-01 8 71041055 71041055 C T NCOA2 Missense_Mutation p.R1162Q 0.07 tolerated(0.63) probably_damaging(0.926) TCGA-55-8506-01 8 74868182 74868182 T A TCEB1 Missense_Mutation p.T38S 0.40 deleterious(0.02) benign(0.217) TCGA-55-8506-01 8 75275219 75275219 C T GDAP1 Missense_Mutation p.L209F 0.43 deleterious(0.04) probably_damaging(0.999) TCGA-55-8506-01 8 75757616 75757616 G T PI15 Splice_Site p.X176_splice 0.17 TCGA-55-8506-01 8 76465274 76465274 T A HNF4G Intron 0.18 TCGA-55-8506-01 8 76471133 76471133 C G HNF4G Silent p.S318S 0.39 TCGA-55-8506-01 8 77618582 77618582 C T ZFHX4 Silent p.C753C 0.10 TCGA-55-8506-01 8 87242402 87242402 G T SLC7A13 Silent p.P35P 0.35 TCGA-55-8506-01 8 87899799 87899799 G T CNBD1 Missense_Mutation p.G40C 0.27 deleterious(0) probably_damaging(0.985) TCGA-55-8506-01 8 88885536 88885536 C A DCAF4L2 Missense_Mutation p.G222W 0.20 tolerated(0.06) benign(0.02) TCGA-55-8506-01 8 88885952 88885952 G A DCAF4L2 Missense_Mutation p.T83I 0.34 tolerated(0.38) benign(0.119) TCGA-55-8506-01 8 88885963 88885963 C A DCAF4L2 Silent p.A79A 0.32 TCGA-55-8506-01 8 89339378 89339378 C - MMP16 Frame_Shift_Del p.V20Cfs*54 0.21 TCGA-55-8506-01 8 93017292 93017292 C A RUNX1T1 Intron 0.32 TCGA-55-8506-01 8 97245423 97245423 G A UQCRB Nonsense_Mutation p.R18* 0.11 TCGA-55-8506-01 8 99560300 99560300 C A STK3 Silent p.G374G 0.25 TCGA-55-8506-01 9 100245509 100245509 C T TDRD7 Missense_Mutation p.P931S 0.12 tolerated(0.07) possibly_damaging(0.661) TCGA-55-8506-01 9 102590799 102590799 G A NR4A3 Missense_Mutation p.A170T 0.09 tolerated(0.34) benign(0.004) TCGA-55-8506-01 9 102609889 102609889 T G NR4A3 Missense_Mutation p.M553R 0.32 deleterious(0) possibly_damaging(0.587) TCGA-55-8506-01 9 104499792 104499792 C T GRIN3A Missense_Mutation p.G157D 0.36 deleterious(0.04) probably_damaging(0.935) TCGA-55-8506-01 9 105767982 105767982 C A CYLC2 3'UTR 0.30 TCGA-55-8506-01 9 107298633 107298633 C A OR13C3 Silent p.V154V 0.25 TCGA-55-8506-01 9 107331771 107331771 G T OR13C8 Missense_Mutation p.G108V 0.29 deleterious(0) possibly_damaging(0.856) TCGA-55-8506-01 9 109686887 109686887 A G ZNF462 Missense_Mutation p.M232V 0.30 benign(0.019) TCGA-55-8506-01 9 109689143 109689143 G T ZNF462 Missense_Mutation p.A984S 0.28 probably_damaging(0.993) TCGA-55-8506-01 9 110248069 110248069 G A KLF4 Missense_Mutation p.S468L 0.06 deleterious(0) probably_damaging(0.947) TCGA-55-8506-01 9 111899656 111899656 T A FRRS1L 3'UTR 0.17 TCGA-55-8506-01 9 111936881 111936881 G A EPB41L4B Silent p.L886L 0.34 TCGA-55-8506-01 9 112004014 112004014 G A EPB41L4B Intron 0.23 TCGA-55-8506-01 9 112899233 112899234 - A PALM2-AKAP2 Frame_Shift_Ins p.W472Mfs*64 0.24 TCGA-55-8506-01 9 113149586 113149586 G T SVEP1 Missense_Mutation p.H3347N 0.29 benign(0.021) TCGA-55-8506-01 9 115818903 115818903 C T ZFP37 Silent p.A22A 0.17 TCGA-55-8506-01 9 117103959 117103959 G A AKNA Silent p.S1307S 0.10 TCGA-55-8506-01 9 117119166 117119166 T C AKNA Silent p.P941P 0.30 TCGA-55-8506-01 9 117848761 117848761 G A TNC Missense_Mutation p.R417C 0.12 deleterious(0) probably_damaging(0.956) TCGA-55-8506-01 9 120476340 120476340 C A TLR4 Missense_Mutation p.S645Y 0.39 tolerated(0.21) possibly_damaging(0.655) TCGA-55-8506-01 9 123914747 123914747 T C CNTRL Intron 0.34 TCGA-55-8506-01 9 124534910 124534910 G A DAB2IP Silent p.P673P 0.12 TCGA-55-8506-01 9 124801635 124801635 G A TTLL11 Missense_Mutation p.R249W 0.27 deleterious(0) probably_damaging(0.995) TCGA-55-8506-01 9 125273653 125273653 T G OR1J2 Missense_Mutation p.D191E 0.38 deleterious_low_confidence(0) probably_damaging(0.936) TCGA-55-8506-01 9 125315590 125315590 T A OR1N2 Missense_Mutation p.F48I 0.26 deleterious(0) benign(0.126) TCGA-55-8506-01 9 127262440 127262440 T A NR5A1 Nonsense_Mutation p.R267* 0.43 TCGA-55-8506-01 9 128092475 128092475 A T GAPVD1 Silent p.V717V 0.34 TCGA-55-8506-01 9 130550660 130550660 G T CDK9 Missense_Mutation p.L200F 0.32 deleterious(0.02) possibly_damaging(0.873) TCGA-55-8506-01 9 130829166 130829166 C A NAIF1 Missense_Mutation p.W72L 0.05 deleterious(0) probably_damaging(0.995) TCGA-55-8506-01 9 131371399 131371399 A G SPTAN1 Splice_Site p.X1532_splice 0.12 TCGA-55-8506-01 9 133753854 133753854 G A ABL1 Silent p.P460P 0.14 TCGA-55-8506-01 9 134103669 134103669 G A NUP214 Missense_Mutation p.G2009S 0.10 probably_damaging(0.97) TCGA-55-8506-01 9 134360138 134360138 C T PRRC2B Silent p.L1842L 0.37 TCGA-55-8506-01 9 134738474 134738474 C T MED27 Silent p.P259P 0.10 TCGA-55-8506-01 9 137804347 137804347 C A FCN1 Missense_Mutation p.A195S 0.23 tolerated(0.53) benign(0.26) TCGA-55-8506-01 9 139118702 139118702 C T QSOX2 Missense_Mutation p.R116H 0.04 deleterious(0.02) possibly_damaging(0.903) TCGA-55-8506-01 9 139262253 139262253 C T CARD9 Missense_Mutation p.A369T 0.07 tolerated(0.75) benign(0) TCGA-55-8506-01 9 139272678 139272678 G A SNAPC4 Missense_Mutation p.P1201S 0.69 tolerated(0.25) benign(0.015) TCGA-55-8506-01 9 139333264 139333264 G A INPP5E Missense_Mutation p.S203F 0.30 deleterious(0.04) probably_damaging(0.954) TCGA-55-8506-01 9 139357393 139357393 C T SEC16A Silent p.S1613S 0.19 TCGA-55-8506-01 9 139794066 139794066 C T TRAF2 Missense_Mutation p.A70V 0.33 tolerated(0.06) possibly_damaging(0.555) TCGA-55-8506-01 9 139873466 139873466 G A PTGDS Missense_Mutation p.A46T 0.21 tolerated(0.29) benign(0.015) TCGA-55-8506-01 9 140062159 140062159 C A GRIN1 Intron 0.38 TCGA-55-8506-01 9 140150830 140150830 A T NELFB Missense_Mutation p.M106L 0.65 tolerated(0.16) benign(0.212) TCGA-55-8506-01 9 18636003 18636003 C A ADAMTSL1 Missense_Mutation p.P222T 0.34 deleterious(0.04) probably_damaging(1) TCGA-55-8506-01 9 18928802 18928802 C A FAM154A Nonsense_Mutation p.E225* 0.13 TCGA-55-8506-01 9 19080622 19080622 C G HAUS6 Missense_Mutation p.V307L 0.24 deleterious(0.01) possibly_damaging(0.799) TCGA-55-8506-01 9 20948342 20948342 G T FOCAD Missense_Mutation p.D1250Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 9 2718610 2718610 C A KCNV2 Missense_Mutation p.Q291K 0.23 tolerated(0.95) benign(0.001) TCGA-55-8506-01 9 32631748 32631748 G A TAF1L Missense_Mutation p.P1277L 0.38 tolerated(0.08) benign(0.411) TCGA-55-8506-01 9 32784316 32784316 C A TMEM215 Silent p.I45I 0.27 TCGA-55-8506-01 9 34249829 34249829 C T UBAP1 Missense_Mutation p.P443L 0.20 tolerated(0.19) benign(0.104) TCGA-55-8506-01 9 34372318 34372318 C T KIAA1161 Silent p.P174P 0.14 TCGA-55-8506-01 9 35449713 35449713 G T ATP8B5P RNA 0.14 TCGA-55-8506-01 9 35547964 35547964 G A RUSC2 Silent p.T482T 0.16 TCGA-55-8506-01 9 35674171 35674171 C A CA9 Missense_Mutation p.P72H 0.16 deleterious_low_confidence(0.02) benign(0.001) TCGA-55-8506-01 9 35676075 35676075 C - CA9 Frame_Shift_Del p.P207Lfs*4 0.27 TCGA-55-8506-01 9 35853796 35853796 G T TMEM8B Missense_Mutation p.G460C 0.27 deleterious(0.01) possibly_damaging(0.819) TCGA-55-8506-01 9 38016080 38016080 G C SHB Missense_Mutation p.L256V 0.10 tolerated(0.58) benign(0.138) TCGA-55-8506-01 9 40772501 40772501 A T ZNF658 Missense_Mutation p.V925D 0.14 deleterious(0) possibly_damaging(0.9) TCGA-55-8506-01 9 40775004 40775004 G A ZNF658 Missense_Mutation p.R91W 0.21 deleterious(0.05) benign(0) TCGA-55-8506-01 9 43816743 43816743 G T CNTNAP3B Missense_Mutation p.Q283H 0.14 tolerated(0.55) benign(0.026) TCGA-55-8506-01 9 5922726 5922726 C A KIAA2026 Missense_Mutation p.M1090I 0.14 tolerated(0.17) benign(0.006) TCGA-55-8506-01 9 72067157 72067157 T C APBA1 Missense_Mutation p.R617G 0.11 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 9 77370382 77370382 G A TRPM6 Missense_Mutation p.T1598I 0.27 deleterious_low_confidence(0.03) benign(0.273) TCGA-55-8506-01 9 77502845 77502845 A T TRPM6 5'UTR 0.21 TCGA-55-8506-01 9 78936449 78936449 C T PCSK5 Silent p.H1305H 0.25 TCGA-55-8506-01 9 78973725 78973725 G A PCSK5 Missense_Mutation p.V1824I 0.33 deleterious(0) benign(0.111) TCGA-55-8506-01 9 79634932 79634932 C T FOXB2 Missense_Mutation p.A121V 0.25 deleterious_low_confidence(0.03) unknown(0) TCGA-55-8506-01 9 79635203 79635203 G A FOXB2 Silent p.P211P 0.19 TCGA-55-8506-01 9 80923411 80923411 G T PSAT1 Missense_Mutation p.G218W 0.38 deleterious(0) probably_damaging(0.994) TCGA-55-8506-01 9 84610009 84610009 G T SPATA31D1 Missense_Mutation p.V1542F 0.29 deleterious(0.04) benign(0.196) TCGA-55-8506-01 9 90500685 90500685 T C SPATA31E1 Missense_Mutation p.V428A 0.34 deleterious(0.01) benign(0.089) TCGA-55-8506-01 9 90535252 90535252 G T SPATA31C1 RNA 0.26 TCGA-55-8506-01 9 91956281 91956281 T C SECISBP2 Missense_Mutation p.V441A 0.15 tolerated(0.11) benign(0.001) TCGA-55-8506-01 9 94499774 94499774 C A ROR2 Missense_Mutation p.C174F 0.37 deleterious(0) probably_damaging(1) TCGA-55-8506-01 9 95152234 95152234 G T OGN Missense_Mutation p.Q178K 0.29 tolerated(0.96) benign(0.006) TCGA-55-8506-01 9 95397468 95397468 G A IPPK Nonsense_Mutation p.R347* 0.35 TCGA-55-8506-01 9 95738724 95738724 G T FGD3 Silent p.T62T 0.31 TCGA-55-8506-01 9 95738954 95738954 C - FGD3 Frame_Shift_Del p.Q141Rfs*33 0.17 TCGA-55-8506-01 9 96398705 96398705 G T PHF2 Missense_Mutation p.R66L 0.20 deleterious(0.02) unknown(0) TCGA-55-8506-01 9 97082562 97082562 G A NUTM2F Silent p.D432D 0.15 TCGA-55-8506-01 9 98678076 98678076 G T ERCC6L2 Missense_Mutation p.Q316H 0.24 deleterious(0) probably_damaging(1) TCGA-55-8506-01 X 100103737 100103737 G T NOX1 Missense_Mutation p.H484N 0.19 tolerated(0.29) benign(0.012) TCGA-55-8506-01 X 100274347 100274347 A G TRMT2B Missense_Mutation p.L405S 0.18 deleterious(0.03) probably_damaging(0.962) TCGA-55-8506-01 X 100291975 100291975 C A TRMT2B Nonsense_Mutation p.G176* 0.22 TCGA-55-8506-01 X 100292970 100292970 C A TRMT2B Missense_Mutation p.S125I 0.35 tolerated(0.19) benign(0.001) TCGA-55-8506-01 X 100333938 100333938 A G TMEM35 5'UTR 0.14 TCGA-55-8506-01 X 101095563 101095563 C T NXF5 Silent p.E202E 0.25 TCGA-55-8506-01 X 102004753 102004753 C T BHLHB9 Missense_Mutation p.P277L 0.23 deleterious(0.04) benign(0.221) TCGA-55-8506-01 X 102192368 102192368 C - RAB40AL Frame_Shift_Del p.P42Rfs*22 0.15 TCGA-55-8506-01 X 102841902 102841902 C T TCEAL4 Missense_Mutation p.P100L 0.16 tolerated(0.12) benign(0.063) TCGA-55-8506-01 X 10417702 10417702 C A MID1 Missense_Mutation p.K570N 0.21 deleterious(0.01) probably_damaging(0.948) TCGA-55-8506-01 X 105153052 105153052 G T NRK Missense_Mutation p.R474S 0.14 deleterious_low_confidence(0.03) benign(0.23) TCGA-55-8506-01 X 105279110 105279110 G C SERPINA7 Missense_Mutation p.Q297E 0.19 tolerated(0.06) benign(0.277) TCGA-55-8506-01 X 105449859 105449859 T C MUM1L1 Missense_Mutation p.L145P 0.17 tolerated(0.23) benign(0.013) TCGA-55-8506-01 X 105905389 105905389 G T CXorf57 Missense_Mutation p.R708L 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-55-8506-01 X 105905390 105905390 G T CXorf57 Silent p.R708R 0.10 TCGA-55-8506-01 X 106243198 106243199 - T MORC4 Frame_Shift_Ins p.M1? 0.23 TCGA-55-8506-01 X 106806403 106806403 G C FRMPD3 Silent p.T396T 0.42 TCGA-55-8506-01 X 106844065 106844065 C A FRMPD3 Missense_Mutation p.N965K 0.17 tolerated_low_confidence(0.86) benign(0.001) TCGA-55-8506-01 X 107315991 107315991 G C VSIG1 Missense_Mutation p.G202A 0.33 deleterious(0) probably_damaging(1) TCGA-55-8506-01 X 107319357 107319357 G A VSIG1 Missense_Mutation p.A283T 0.20 deleterious(0.01) possibly_damaging(0.889) TCGA-55-8506-01 X 107430468 107430468 A T COL4A6 Silent p.P604P 0.18 TCGA-55-8506-01 X 107869445 107869445 C A COL4A5 Missense_Mutation p.Q1038K 0.18 unknown(0) TCGA-55-8506-01 X 107939561 107939561 T C COL4A5 Silent p.L1677L 0.39 TCGA-55-8506-01 X 108868031 108868031 C A KCNE1L Missense_Mutation p.L73F 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-55-8506-01 X 109694722 109694722 G C RGAG1 Missense_Mutation p.G293R 0.12 tolerated(0.22) possibly_damaging(0.897) TCGA-55-8506-01 X 109963062 109963062 C A CHRDL1 Splice_Site p.X181_splice 0.16 TCGA-55-8506-01 X 114251748 114251748 C T IL13RA2 Missense_Mutation p.E29K 0.25 tolerated(0.12) benign(0.003) TCGA-55-8506-01 X 115588851 115588852 - TT SLC6A14 Frame_Shift_Ins p.L565Ffs*2 0.10 TCGA-55-8506-01 X 117538407 117538407 G T WDR44 Missense_Mutation p.V461L 0.12 tolerated(0.05) benign(0.298) TCGA-55-8506-01 X 11781090 11781090 C T MSL3 Silent p.N241N 0.13 TCGA-55-8506-01 X 118109308 118109308 G T LONRF3 Missense_Mutation p.D189Y 0.24 deleterious(0) probably_damaging(1) TCGA-55-8506-01 X 118223042 118223042 G T KIAA1210 Silent p.S717S 0.11 TCGA-55-8506-01 X 119761028 119761028 T A C1GALT1C1 Splice_Site 0.17 TCGA-55-8506-01 X 120008940 120008940 C A CT47B1 Silent p.S195S 0.15 TCGA-55-8506-01 X 122757067 122757067 G T THOC2 Missense_Mutation p.P1191T 0.19 tolerated(0.18) benign(0.045) TCGA-55-8506-01 X 122799684 122799684 C T THOC2 Missense_Mutation p.G399R 0.14 tolerated(0.25) benign(0.179) TCGA-55-8506-01 X 123159690 123159690 G T STAG2 Missense_Mutation p.Q15H 0.11 tolerated_low_confidence(0.07) benign(0.004) TCGA-55-8506-01 X 123654554 123654554 G T TENM1 Silent p.T1038T 0.25 TCGA-55-8506-01 X 124028170 124028170 C G TENM1 Missense_Mutation p.M170I 0.19 tolerated_low_confidence(0.52) benign(0) TCGA-55-8506-01 X 125299815 125299815 C T DCAF12L2 Silent p.A31A 0.44 TCGA-55-8506-01 X 128696582 128696582 A T OCRL Nonsense_Mutation p.K355* 0.23 TCGA-55-8506-01 X 128901596 128901596 G T XPNPEP2 Silent p.L586L 0.18 TCGA-55-8506-01 X 128926649 128926649 G T SASH3 Missense_Mutation p.W213L 0.29 deleterious(0) probably_damaging(0.999) TCGA-55-8506-01 X 129149755 129149755 C A BCORL1 Missense_Mutation p.L1003M 0.26 probably_damaging(0.972) TCGA-55-8506-01 X 129189899 129189899 C T BCORL1 Missense_Mutation p.R1642W 0.11 probably_damaging(0.999) TCGA-55-8506-01 X 129263560 129263560 G T AIFM1 Missense_Mutation p.A605D 0.12 deleterious(0) probably_damaging(0.981) TCGA-55-8506-01 X 12939402 12939403 - A TLR8 Frame_Shift_Ins p.T750Nfs*8 0.11 TCGA-55-8506-01 X 129507028 129507028 G T SLC25A14 3'UTR 0.42 TCGA-55-8506-01 X 132436931 132436931 G T GPC4 Nonsense_Mutation p.C545* 0.18 TCGA-55-8506-01 X 134166390 134166390 C A FAM127A 5'UTR 0.17 TCGA-55-8506-01 X 134166523 134166523 C A FAM127A Missense_Mutation p.T37N 0.17 tolerated(0.06) probably_damaging(0.92) TCGA-55-8506-01 X 134186140 134186140 G T FAM127B 5'UTR 0.16 TCGA-55-8506-01 X 134680705 134680705 G A DDX26B Missense_Mutation p.A170T 0.35 deleterious(0) possibly_damaging(0.892) TCGA-55-8506-01 X 135430440 135430441 - A GPR112 Frame_Shift_Ins p.V1528Sfs*3 0.14 TCGA-55-8506-01 X 135432217 135432217 A T GPR112 Missense_Mutation p.R2118W 0.28 deleterious(0.03) possibly_damaging(0.908) TCGA-55-8506-01 X 135633091 135633091 C A VGLL1 Intron 0.12 TCGA-55-8506-01 X 135956385 135956385 G T RBMX Nonsense_Mutation p.Y364* 0.17 TCGA-55-8506-01 X 135957249 135957249 A C RBMX Missense_Mutation p.S287R 0.05 tolerated(0.05) benign(0.062) TCGA-55-8506-01 X 140985549 140985549 C A MAGEC3 Silent p.T621T 0.30 TCGA-55-8506-01 X 14550436 14550436 G T GLRA2 Missense_Mutation p.L48F 0.33 deleterious(0.01) possibly_damaging(0.651) TCGA-55-8506-01 X 14748354 14748354 G A GLRA2 Missense_Mutation p.R369H 0.17 deleterious(0.04) benign(0.12) TCGA-55-8506-01 X 149638355 149638355 G T MAMLD1 Silent p.P145P 0.15 TCGA-55-8506-01 X 150348992 150348992 C A GPR50 Silent p.R313R 0.14 TCGA-55-8506-01 X 150868585 150868585 G A PRRG3 Missense_Mutation p.S42N 0.29 tolerated(0.11) benign(0.318) TCGA-55-8506-01 X 151532986 151532986 C A GABRA3 Silent p.L19L 0.31 TCGA-55-8506-01 X 151815582 151815582 T A GABRQ Missense_Mutation p.N160K 0.36 deleterious(0.05) benign(0.3) TCGA-55-8506-01 X 15266947 15266947 C A ASB9 Missense_Mutation p.A227S 0.31 tolerated(0.23) benign(0.199) TCGA-55-8506-01 X 153141222 153141222 C G L1CAM Missense_Mutation p.E24Q 0.33 tolerated(0.16) benign(0.073) TCGA-55-8506-01 X 153218232 153218232 G T HCFC1 Missense_Mutation p.Q1559K 0.10 tolerated_low_confidence(0.09) possibly_damaging(0.761) TCGA-55-8506-01 X 153220004 153220004 C T HCFC1 Silent p.S1282S 0.14 TCGA-55-8506-01 X 15349466 15349466 G C PIGA Missense_Mutation p.A196G 0.25 tolerated(0.07) benign(0.101) TCGA-55-8506-01 X 153581507 153581507 C T FLNA Missense_Mutation p.V2030M 0.17 deleterious(0) possibly_damaging(0.682) TCGA-55-8506-01 X 153994512 153994512 C A DKC1 Missense_Mutation p.D95E 0.19 deleterious(0) probably_damaging(0.992) TCGA-55-8506-01 X 154493614 154493614 G A RAB39B 5'UTR 0.16 TCGA-55-8506-01 X 15584482 15584482 C A ACE2 Missense_Mutation p.V670L 0.15 deleterious_low_confidence(0.01) benign(0.303) TCGA-55-8506-01 X 17819691 17819691 G T RAI2 Missense_Mutation p.S147Y 0.13 deleterious(0) probably_damaging(0.989) TCGA-55-8506-01 X 19018034 19018034 C A GPR64 Missense_Mutation p.D759Y 0.20 deleterious(0.03) probably_damaging(0.928) TCGA-55-8506-01 X 19554562 19554562 G A SH3KBP1 Silent p.D657D 0.19 TCGA-55-8506-01 X 19564044 19564044 G T SH3KBP1 Missense_Mutation p.S540Y 0.24 tolerated(0.19) probably_damaging(0.966) TCGA-55-8506-01 X 20033340 20033340 C T MAP7D2 Splice_Site p.X583_splice 0.12 TCGA-55-8506-01 X 21534654 21534654 G T CNKSR2 Missense_Mutation p.G288C 0.22 deleterious(0.02) possibly_damaging(0.9) TCGA-55-8506-01 X 21874909 21874909 G T YY2 Missense_Mutation p.D103Y 0.12 deleterious(0) probably_damaging(0.923) TCGA-55-8506-01 X 21875264 21875264 C T YY2 Missense_Mutation p.P221L 0.14 deleterious(0.03) benign(0.41) TCGA-55-8506-01 X 230859 230859 G - GTPBP6 Frame_Shift_Del p.H10Tfs*26 0.25 TCGA-55-8506-01 X 23411786 23411786 G - PTCHD1 Frame_Shift_Del p.V718Wfs*5 0.35 TCGA-55-8506-01 X 25028386 25028386 G T ARX Silent p.A370A 0.28 TCGA-55-8506-01 X 29974011 29974011 C A IL1RAPL1 3'UTR 0.33 TCGA-55-8506-01 X 30236732 30236732 G T MAGEB2 Missense_Mutation p.R12L 0.21 deleterious(0.01) probably_damaging(1) TCGA-55-8506-01 X 30873434 30873434 C A TAB3 Missense_Mutation p.Q116H 0.32 tolerated(0.08) probably_damaging(0.99) TCGA-55-8506-01 X 31747768 31747768 C G DMD Missense_Mutation p.R2547T 0.25 benign(0.402) TCGA-55-8506-01 X 34150178 34150178 C A FAM47A Missense_Mutation p.R73L 0.21 tolerated(0.73) possibly_damaging(0.693) TCGA-55-8506-01 X 34150221 34150221 G A FAM47A Missense_Mutation p.R59C 0.20 deleterious(0.02) probably_damaging(0.988) TCGA-55-8506-01 X 34150222 34150222 G T FAM47A Missense_Mutation p.F58L 0.20 deleterious(0.02) probably_damaging(0.916) TCGA-55-8506-01 X 37026773 37026774 TG A FAM47C Frame_Shift_Del p.L97Hfs*22 0.31 TCGA-55-8506-01 X 40534478 40534478 G T MED14 Missense_Mutation p.Q1006K 0.12 tolerated(0.67) benign(0.009) TCGA-55-8506-01 X 41524663 41524663 T C CASK Missense_Mutation p.K192R 0.12 tolerated(0.69) benign(0.003) TCGA-55-8506-01 X 45059913 45059913 A G CXorf36 Silent p.T53T 0.39 TCGA-55-8506-01 X 46332310 46332310 A T KRBOX4 Nonsense_Mutation p.R127* 0.25 TCGA-55-8506-01 X 47497454 47497454 C T ELK1 Missense_Mutation p.G261E 0.14 tolerated(1) benign(0.002) TCGA-55-8506-01 X 48546814 48546814 G A WAS Silent p.E301E 0.23 TCGA-55-8506-01 X 48924954 48924954 G A CCDC120 Missense_Mutation p.R400H 0.24 tolerated(0.16) benign(0.019) TCGA-55-8506-01 X 48972243 48972243 A T GPKOW Splice_Site p.X380_splice 0.11 TCGA-55-8506-01 X 49047930 49047930 C T SYP Silent p.P302P 0.22 TCGA-55-8506-01 X 49768185 49768185 A T CLCN5 Intron 0.21 TCGA-55-8506-01 X 50213191 50213191 G A DGKK RNA 0.23 TCGA-55-8506-01 X 51076183 51076183 C A NUDT10 Silent p.V122V 0.12 TCGA-55-8506-01 X 51487925 51487925 G C GSPT2 Missense_Mutation p.Q401H 0.18 deleterious(0.02) possibly_damaging(0.796) TCGA-55-8506-01 X 51638353 51638353 A T MAGED1 Missense_Mutation p.T140S 0.09 deleterious_low_confidence(0.02) unknown(0) TCGA-55-8506-01 X 52681969 52681969 T A SSX7 Missense_Mutation p.K45N 0.21 deleterious(0) probably_damaging(0.992) TCGA-55-8506-01 X 53243952 53243952 G A KDM5C Silent p.D347D 0.18 TCGA-55-8506-01 X 54783747 54783747 G A ITIH6 Silent p.T920T 0.19 TCGA-55-8506-01 X 54783890 54783890 T A ITIH6 Nonsense_Mutation p.K873* 0.41 TCGA-55-8506-01 X 54839587 54839587 G T MAGED2 Missense_Mutation p.R401L 0.22 tolerated(0.05) benign(0.171) TCGA-55-8506-01 X 55033387 55033387 A G APEX2 Missense_Mutation p.H359R 0.35 tolerated(0.61) benign(0.001) TCGA-55-8506-01 X 57162134 57162134 G T SPIN2A 3'UTR 0.50 TCGA-55-8506-01 X 5821336 5821336 C T NLGN4X Silent p.A461A 0.17 TCGA-55-8506-01 X 5821596 5821596 C G NLGN4X Missense_Mutation p.E375Q 0.25 deleterious(0) probably_damaging(0.996) TCGA-55-8506-01 X 591755 591755 C A SHOX Missense_Mutation p.S41R 0.19 tolerated_low_confidence(0.06) benign(0.401) TCGA-55-8506-01 X 63410468 63410468 T A AMER1 Missense_Mutation p.E900V 0.14 deleterious(0) possibly_damaging(0.556) TCGA-55-8506-01 X 63411142 63411142 C A AMER1 Missense_Mutation p.Q675H 0.33 tolerated(0.1) benign(0.204) TCGA-55-8506-01 X 64959654 64959654 C A MSN Missense_Mutation p.H545N 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-55-8506-01 X 67939098 67939098 C T STARD8 Missense_Mutation p.H583Y 0.27 deleterious(0.01) benign(0.18) TCGA-55-8506-01 X 69649520 69649520 C A GDPD2 Missense_Mutation p.Q372K 0.15 tolerated(0.32) benign(0.216) TCGA-55-8506-01 X 70320966 70320966 G T FOXO4 Missense_Mutation p.V296F 0.49 deleterious(0.02) possibly_damaging(0.516) TCGA-55-8506-01 X 70468355 70468355 C A ZMYM3 Missense_Mutation p.G586V 0.17 tolerated(0.16) probably_damaging(1) TCGA-55-8506-01 X 70586259 70586259 G T TAF1 Missense_Mutation p.G32V 0.23 deleterious_low_confidence(0.04) benign(0.284) TCGA-55-8506-01 X 71813030 71813030 C T PHKA1 Missense_Mutation p.R1056H 0.15 deleterious(0) probably_damaging(0.993) TCGA-55-8506-01 X 71864268 71864268 A G PHKA1 Missense_Mutation p.V468A 0.18 tolerated(0.17) benign(0.358) TCGA-55-8506-01 X 72299171 72299171 A T PABPC1L2A Missense_Mutation p.Y19N 0.21 deleterious_low_confidence(0) possibly_damaging(0.712) TCGA-55-8506-01 X 72299296 72299296 G A PABPC1L2A 5'UTR 0.10 TCGA-55-8506-01 X 75004434 75004434 A G MAGEE2 Silent p.A151A 0.12 TCGA-55-8506-01 X 76938077 76938077 C T ATRX Missense_Mutation p.A891T 0.35 benign(0.001) TCGA-55-8506-01 X 77284778 77284778 C T ATP7A Missense_Mutation p.T983M 0.14 tolerated(0.09) benign(0.15) TCGA-55-8506-01 X 78011192 78011192 C A LPAR4 Missense_Mutation p.R276S 0.11 tolerated(0.09) probably_damaging(0.973) TCGA-55-8506-01 X 78427451 78427451 C A GPR174 Missense_Mutation p.A316E 0.38 tolerated(0.23) benign(0.013) TCGA-55-8506-01 X 79978129 79978129 C A BRWD3 Missense_Mutation p.R603L 0.13 deleterious(0.03) benign(0.35) TCGA-55-8506-01 X 83127971 83127971 G C CYLC1 Missense_Mutation p.L85F 0.17 tolerated(1) benign(0.1) TCGA-55-8506-01 X 83361409 83361409 G T RPS6KA6 Nonsense_Mutation p.C443* 0.19 TCGA-55-8506-01 X 99551398 99551398 G T PCDH19 Silent p.P1108P 0.28 TCGA-55-8506-01 X 99551399 99551399 G T PCDH19 Missense_Mutation p.P1108H 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.56) TCGA-55-8506-01 X 99657785 99657785 C A PCDH19 Missense_Mutation p.D785Y 0.33 deleterious(0.05) probably_damaging(0.986) TCGA-55-8507-01 10 102988607 102988607 C A LBX1 5'UTR 0.59 TCGA-55-8507-01 10 106976754 106976754 G T SORCS3 Missense_Mutation p.A870S 0.33 tolerated(0.74) benign(0.177) TCGA-55-8507-01 10 107023146 107023146 C A SORCS3 3'UTR 0.25 TCGA-55-8507-01 10 108437126 108437126 G T SORCS1 Missense_Mutation p.Q593K 0.25 tolerated(0.72) benign(0.021) TCGA-55-8507-01 10 108469079 108469079 G T SORCS1 Silent p.R349R 0.69 TCGA-55-8507-01 10 112839183 112839183 C G ADRA2A 3'UTR 0.43 TCGA-55-8507-01 10 118305445 118305445 G T PNLIP 5'UTR 0.56 TCGA-55-8507-01 10 118435964 118435964 C A HSPA12A Missense_Mutation p.D446Y 0.69 deleterious(0.01) possibly_damaging(0.694) TCGA-55-8507-01 10 121668587 121668587 G - SEC23IP Frame_Shift_Del p.W379Cfs*5 0.51 TCGA-55-8507-01 10 124268181 124268181 G T HTRA1 Missense_Mutation p.V339L 0.66 deleterious(0) probably_damaging(0.979) TCGA-55-8507-01 10 124345884 124345884 G A DMBT1 Missense_Mutation p.G590S 0.60 tolerated(0.64) unknown(0) TCGA-55-8507-01 10 124345885 124345885 G T DMBT1 Missense_Mutation p.G590V 0.61 deleterious(0.02) unknown(0) TCGA-55-8507-01 10 124351940 124351940 G T DMBT1 Missense_Mutation p.G777C 0.60 deleterious(0) unknown(0) TCGA-55-8507-01 10 124697663 124697663 T C C10orf88 Missense_Mutation p.I221V 0.39 tolerated(0.27) benign(0.164) TCGA-55-8507-01 10 131639234 131639234 G T EBF3 Missense_Mutation p.Q470K 0.21 deleterious_low_confidence(0.01) benign(0.052) TCGA-55-8507-01 10 132944861 132944861 A T TCERG1L Missense_Mutation p.V366D 0.44 deleterious(0) probably_damaging(0.999) TCGA-55-8507-01 10 133918387 133918387 C T JAKMIP3 Silent p.N25N 0.33 TCGA-55-8507-01 10 134997465 134997465 C A KNDC1 Silent p.L199L 0.24 TCGA-55-8507-01 10 15573121 15573121 G T ITGA8 Silent p.S970S 0.32 TCGA-55-8507-01 10 15628643 15628643 T A ITGA8 Missense_Mutation p.D771V 0.57 tolerated(0.31) benign(0.142) TCGA-55-8507-01 10 15628644 15628644 C T ITGA8 Missense_Mutation p.D771N 0.52 tolerated(0.49) benign(0.008) TCGA-55-8507-01 10 26457657 26457657 A T MYO3A Missense_Mutation p.Y1043F 0.32 deleterious(0) benign(0.334) TCGA-55-8507-01 10 30901767 30901767 G T LYZL2 Missense_Mutation p.Q167K 0.55 tolerated(0.16) benign(0.002) TCGA-55-8507-01 10 45799067 45799067 C A OR13A1 Missense_Mutation p.M268I 0.69 tolerated(0.22) benign(0.023) TCGA-55-8507-01 10 45877967 45877967 G T ALOX5 Missense_Mutation p.G63C 0.61 deleterious(0) probably_damaging(1) TCGA-55-8507-01 10 45877968 45877968 G T ALOX5 Missense_Mutation p.G63V 0.59 deleterious(0) probably_damaging(1) TCGA-55-8507-01 10 46959954 46959954 G T SYT15 3'Flank 0.22 TCGA-55-8507-01 10 49393649 49393649 G T FRMPD2 Missense_Mutation p.P769Q 0.67 tolerated(0.23) benign(0.175) TCGA-55-8507-01 10 50294019 50294019 C A VSTM4 Missense_Mutation p.E169D 0.52 tolerated(0.45) benign(0.002) TCGA-55-8507-01 10 50315806 50315806 C T VSTM4 Missense_Mutation p.R97Q 0.23 tolerated(1) benign(0.008) TCGA-55-8507-01 10 51580584 51580584 G T NCOA4 Missense_Mutation p.S73I 0.24 deleterious(0) probably_damaging(0.978) TCGA-55-8507-01 10 52390454 52390454 G C RP11-50E11.3 RNA 0.72 TCGA-55-8507-01 10 5435550 5435550 T A TUBAL3 Missense_Mutation p.E424V 0.62 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-8507-01 10 54528014 54528014 C A MBL2 Missense_Mutation p.E210D 0.27 tolerated(0.48) benign(0) TCGA-55-8507-01 10 55566673 55566673 C G PCDH15 Missense_Mutation p.R1571P 0.57 deleterious_low_confidence(0.01) benign(0) TCGA-55-8507-01 10 5567426 5567426 C A CALML3 Silent p.I126I 0.48 TCGA-55-8507-01 10 55826594 55826594 G T PCDH15 Missense_Mutation p.P715T 0.52 deleterious(0) probably_damaging(0.992) TCGA-55-8507-01 10 55912973 55912973 G T PCDH15 Silent p.I557I 0.63 TCGA-55-8507-01 10 6060027 6060027 C A IL2RA Missense_Mutation p.W261C 0.72 deleterious(0) probably_damaging(0.998) TCGA-55-8507-01 10 64957294 64957294 C A JMJD1C Nonsense_Mutation p.G1841* 0.39 TCGA-55-8507-01 10 65225291 65225291 G C JMJD1C Silent p.A44A 0.10 TCGA-55-8507-01 10 65354545 65354545 G T REEP3 Missense_Mutation p.W38L 0.51 deleterious(0) probably_damaging(0.995) TCGA-55-8507-01 10 72061133 72061133 C A LRRC20 Missense_Mutation p.G178C 0.19 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-55-8507-01 10 73501457 73501457 G C CDH23 Missense_Mutation p.G1547R 0.25 deleterious(0.04) probably_damaging(0.988) TCGA-55-8507-01 10 76360241 76360241 A G ADK Missense_Mutation p.I289M 0.25 deleterious(0) probably_damaging(0.922) TCGA-55-8507-01 10 7866380 7866380 C T TAF3 Missense_Mutation p.P89L 0.18 deleterious(0) possibly_damaging(0.878) TCGA-55-8507-01 10 79593759 79593759 G C DLG5 Missense_Mutation p.A554G 0.66 deleterious(0) probably_damaging(0.996) TCGA-55-8507-01 10 79760777 79760777 C T POLR3A Missense_Mutation p.G812D 0.63 deleterious(0) probably_damaging(0.967) TCGA-55-8507-01 10 90428333 90428333 T A LIPF Missense_Mutation p.F91Y 0.36 tolerated(0.67) benign(0.012) TCGA-55-8507-01 10 90492045 90492045 G C LIPK Splice_Site p.X178_splice 0.16 TCGA-55-8507-01 10 92508800 92508800 C A HTR7 Missense_Mutation p.W364L 0.23 tolerated(0.2) benign(0.085) TCGA-55-8507-01 10 97096427 97096427 G C SORBS1 Missense_Mutation p.Q1164E 0.19 deleterious_low_confidence(0.01) benign(0.006) TCGA-55-8507-01 11 101374853 101374853 G A TRPC6 Missense_Mutation p.P283S 0.09 deleterious(0) probably_damaging(1) TCGA-55-8507-01 11 103349830 103349830 G A DYNC2H1 Missense_Mutation p.C4265Y 0.27 benign(0) TCGA-55-8507-01 11 103907700 103907700 G A DDI1 Missense_Mutation p.M50I 0.22 tolerated(0.17) benign(0.063) TCGA-55-8507-01 11 105795193 105795193 G T GRIA4 Missense_Mutation p.K515N 0.75 deleterious(0) probably_damaging(0.984) TCGA-55-8507-01 11 111573987 111573987 C T SIK2 Missense_Mutation p.A263V 0.17 deleterious(0.02) possibly_damaging(0.803) TCGA-55-8507-01 11 113113542 113113542 C T NCAM1 Intron 0.13 TCGA-55-8507-01 11 113196368 113196368 G T TTC12 Splice_Site p.X148_splice 0.14 TCGA-55-8507-01 11 120008791 120008791 G T TRIM29 5'UTR 0.53 TCGA-55-8507-01 11 120322243 120322243 G T ARHGEF12 Missense_Mutation p.Q622H 0.12 deleterious(0.03) possibly_damaging(0.862) TCGA-55-8507-01 11 120998969 120998969 A C TECTA Silent p.A761A 0.17 TCGA-55-8507-01 11 121028872 121028872 C A TECTA Nonsense_Mutation p.S1543* 0.18 TCGA-55-8507-01 11 123524529 123524529 C A SCN3B 5'UTR 0.34 TCGA-55-8507-01 11 124294410 124294410 C A OR8B4 Missense_Mutation p.D120Y 0.15 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-55-8507-01 11 125280751 125280751 C A PKNOX2 Silent p.A265A 0.68 TCGA-55-8507-01 11 125299861 125299861 T A PKNOX2 Missense_Mutation p.F339Y 0.74 deleterious(0.02) probably_damaging(0.993) TCGA-55-8507-01 11 128842742 128842742 C A ARHGAP32 Missense_Mutation p.R1206L 0.75 tolerated_low_confidence(0.13) benign(0.061) TCGA-55-8507-01 11 134131010 134131010 G C ACAD8 Missense_Mutation p.G260R 0.50 deleterious(0) probably_damaging(0.997) TCGA-55-8507-01 11 14490281 14490281 C G COPB1 Missense_Mutation p.M697I 0.12 tolerated(0.23) benign(0) TCGA-55-8507-01 11 15212341 15212341 T A INSC Nonsense_Mutation p.L272* 0.57 TCGA-55-8507-01 11 193884 193884 G T SCGB1C1 Missense_Mutation p.M76I 0.30 tolerated(0.18) benign(0.002) TCGA-55-8507-01 11 22248885 22248885 A C ANO5 Missense_Mutation p.H134P 0.57 deleterious(0) probably_damaging(0.998) TCGA-55-8507-01 11 24998155 24998155 C A LUZP2 Missense_Mutation p.L181M 0.26 deleterious(0) probably_damaging(0.997) TCGA-55-8507-01 11 26582726 26582726 C A MUC15 Silent p.G324G 0.65 TCGA-55-8507-01 11 33564712 33564712 C A KIAA1549L Missense_Mutation p.P238T 0.26 tolerated_low_confidence(0.17) benign(0.004) TCGA-55-8507-01 11 40136290 40136290 C A LRRC4C Missense_Mutation p.G518V 0.31 deleterious(0.01) benign(0.382) TCGA-55-8507-01 11 4674550 4674550 G A OR51E1 Missense_Mutation p.R265H 0.06 deleterious(0) probably_damaging(0.997) TCGA-55-8507-01 11 47204286 47204286 C A PACSIN3 5'UTR 0.60 TCGA-55-8507-01 11 49830098 49830098 C A RP11-707M1.1 RNA 0.14 TCGA-55-8507-01 11 51412355 51412355 C A OR4A5 Missense_Mutation p.G14V 0.54 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-55-8507-01 11 55872764 55872764 C A OR8H2 Silent p.T82T 0.12 TCGA-55-8507-01 11 56344468 56344468 G - OR5M10 Frame_Shift_Del p.H244Tfs*2 0.29 TCGA-55-8507-01 11 5862206 5862206 A C OR52E6 Missense_Mutation p.F308V 0.13 deleterious(0.01) benign(0.219) TCGA-55-8507-01 11 5878912 5878912 C A OR52E8 Silent p.T7T 0.59 TCGA-55-8507-01 11 6190593 6190593 C G OR52B2 Missense_Mutation p.G322R 0.51 tolerated_low_confidence(0.07) benign(0.422) TCGA-55-8507-01 11 62292738 62292738 G A AHNAK Missense_Mutation p.L3051F 0.31 benign(0.345) TCGA-55-8507-01 11 62299573 62299573 G T AHNAK Missense_Mutation p.N772K 0.30 benign(0.051) TCGA-55-8507-01 11 6291447 6291447 C T CCKBR Missense_Mutation p.T178M 0.31 deleterious(0) probably_damaging(0.993) TCGA-55-8507-01 11 62984861 62984861 G C SLC22A25 Missense_Mutation p.A252G 0.56 deleterious(0.02) possibly_damaging(0.766) TCGA-55-8507-01 11 65789115 65789115 C A CATSPER1 Splice_Site p.X515_splice 0.37 TCGA-55-8507-01 11 66638917 66638917 C A PC Missense_Mutation p.G119V 0.08 deleterious(0) probably_damaging(0.996) TCGA-55-8507-01 11 66811286 66811286 C G SYT12 Missense_Mutation p.P267A 0.07 tolerated(0.09) benign(0.016) TCGA-55-8507-01 11 67226247 67226247 A G CABP4 3'UTR 0.29 TCGA-55-8507-01 11 68115494 68115494 T C LRP5 Missense_Mutation p.Y91H 0.22 tolerated(0.52) benign(0.002) TCGA-55-8507-01 11 78277202 78277202 T C NARS2 Silent p.T163T 0.76 TCGA-55-8507-01 11 82878180 82878180 G T PCF11 Missense_Mutation p.D611Y 0.66 deleterious(0) possibly_damaging(0.629) TCGA-55-8507-01 11 86086284 86086284 G A CCDC81 Missense_Mutation p.E27K 0.25 deleterious(0.03) benign(0.222) TCGA-55-8507-01 11 88583079 88583079 C G GRM5 Silent p.L302L 0.20 TCGA-55-8507-01 11 89537360 89537360 C G TRIM49 Missense_Mutation p.C93S 0.28 deleterious(0.02) probably_damaging(1) TCGA-55-8507-01 11 9069555 9069555 C T SCUBE2 Missense_Mutation p.S577N 0.27 deleterious(0.04) benign(0.005) TCGA-55-8507-01 11 92616343 92616343 T A FAT3 Missense_Mutation p.F4241I 0.40 benign(0.421) TCGA-55-8507-01 11 93545075 93545076 TG - MED17 Frame_Shift_Del p.C601* 0.36 TCGA-55-8507-01 11 93837888 93837888 T A HEPHL1 Missense_Mutation p.D959E 0.09 tolerated(0.91) benign(0.006) TCGA-55-8507-01 11 93886733 93886733 G A PANX1 Silent p.A86A 0.16 TCGA-55-8507-01 11 94731122 94731122 A T KDM4D Missense_Mutation p.M196L 0.08 deleterious(0.01) possibly_damaging(0.905) TCGA-55-8507-01 12 100041872 100041872 C A FAM71C 5'UTR 0.14 TCGA-55-8507-01 12 100811830 100811830 A T SLC17A8 Missense_Mutation p.I441F 0.49 deleterious(0) probably_damaging(0.999) TCGA-55-8507-01 12 101491437 101491437 G A ANO4 Missense_Mutation p.G585E 0.16 deleterious(0) probably_damaging(0.996) TCGA-55-8507-01 12 10342716 10342716 C G TMEM52B Missense_Mutation p.R157G 0.07 tolerated_low_confidence(0.23) benign(0) TCGA-55-8507-01 12 108618565 108618565 C T WSCD2 Silent p.S244S 0.45 TCGA-55-8507-01 12 109311865 109311865 G C SVOP Missense_Mutation p.A370G 0.38 tolerated(0.5) possibly_damaging(0.504) TCGA-55-8507-01 12 111786168 111786168 A T CUX2 3'UTR 0.47 TCGA-55-8507-01 12 112093415 112093415 G A BRAP Silent p.Y422Y 0.18 TCGA-55-8507-01 12 116440865 116440865 C T MED13L Missense_Mutation p.G838R 0.32 deleterious(0.02) unknown(0) TCGA-55-8507-01 12 116452972 116452972 G A MED13L Missense_Mutation p.H373Y 0.40 deleterious(0.02) unknown(0) TCGA-55-8507-01 12 121947691 121947691 G T KDM2B Silent p.G442G 0.41 TCGA-55-8507-01 12 123047193 123047193 A T KNTC1 Missense_Mutation p.R517S 0.39 deleterious(0) benign(0.011) TCGA-55-8507-01 12 124416650 124416650 T C DNAH10 Silent p.L4313L 0.07 TCGA-55-8507-01 12 126135302 126135302 G A TMEM132B Missense_Mutation p.A568T 0.21 tolerated(0.09) possibly_damaging(0.846) TCGA-55-8507-01 12 129559538 129559538 C T TMEM132D Missense_Mutation p.G728R 0.40 deleterious(0.05) benign(0.012) TCGA-55-8507-01 12 130648087 130648087 C A FZD10 Missense_Mutation p.H200Q 0.61 tolerated(0.08) benign(0.119) TCGA-55-8507-01 12 130941231 130941231 C G RIMBP2 Missense_Mutation p.E39D 0.39 tolerated(0.39) benign(0.143) TCGA-55-8507-01 12 132529259 132529259 C T EP400 Missense_Mutation p.P2210L 0.40 unknown(0) TCGA-55-8507-01 12 13768107 13768107 G A GRIN2B Missense_Mutation p.T532I 0.60 deleterious(0) possibly_damaging(0.907) TCGA-55-8507-01 12 21459879 21459879 A T SLCO1A2 Missense_Mutation p.S127T 0.28 tolerated(0.1) possibly_damaging(0.513) TCGA-55-8507-01 12 21728836 21728836 C G GYS2 Silent p.L153L 0.06 TCGA-55-8507-01 12 25148949 25148949 C A C12orf77 Missense_Mutation p.G67W 0.20 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-55-8507-01 12 27107189 27107189 C A FGFR1OP2 Missense_Mutation p.T33N 0.26 tolerated(0.08) possibly_damaging(0.597) TCGA-55-8507-01 12 27888439 27888439 A T MRPS35 Silent p.V194V 0.17 TCGA-55-8507-01 12 29639282 29639282 C A OVCH1 Splice_Site p.X298_splice 0.37 TCGA-55-8507-01 12 29786182 29786182 A T TMTC1 Missense_Mutation p.S342R 0.36 deleterious(0) probably_damaging(0.999) TCGA-55-8507-01 12 31542261 31542261 G T DENND5B Missense_Mutation p.T1213K 0.18 tolerated(0.05) benign(0.222) TCGA-55-8507-01 12 32135230 32135230 A T KIAA1551 Missense_Mutation p.Q447H 0.14 tolerated(0.08) probably_damaging(0.976) TCGA-55-8507-01 12 32520631 32520631 C G BICD1 Missense_Mutation p.P931R 0.09 deleterious_low_confidence(0.01) benign(0.376) TCGA-55-8507-01 12 41331482 41331482 G T CNTN1 Missense_Mutation p.K407N 0.27 tolerated(0.08) probably_damaging(0.926) TCGA-55-8507-01 12 41386972 41386972 A C CNTN1 Missense_Mutation p.I672L 0.24 tolerated(0.61) benign(0.07) TCGA-55-8507-01 12 41967774 41967774 C T PDZRN4 3'UTR 0.18 TCGA-55-8507-01 12 42707739 42707739 C A ZCRB1 Missense_Mutation p.R128L 0.35 deleterious(0) benign(0.067) TCGA-55-8507-01 12 43886310 43886310 A T ADAMTS20 Silent p.T358T 0.21 TCGA-55-8507-01 12 48379522 48379522 G T COL2A1 Missense_Mutation p.P557T 0.26 possibly_damaging(0.698) TCGA-55-8507-01 12 48596487 48596487 G T OR10AD1 Missense_Mutation p.L197M 0.21 tolerated(0.11) benign(0.15) TCGA-55-8507-01 12 49073616 49073616 C A KANSL2 Silent p.G84G 0.24 TCGA-55-8507-01 12 49359961 49359961 G A WNT10B Missense_Mutation p.R363C 0.12 deleterious(0) probably_damaging(0.998) TCGA-55-8507-01 12 49360085 49360085 G A WNT10B Silent p.D321D 0.16 TCGA-55-8507-01 12 49730281 49730281 C T C1QL4 5'UTR 0.16 TCGA-55-8507-01 12 50452898 50452898 C T ASIC1 Silent p.L117L 0.22 TCGA-55-8507-01 12 51237775 51237775 G C TMPRSS12 Missense_Mutation p.R113T 0.15 tolerated(0.09) benign(0.029) TCGA-55-8507-01 12 52308318 52308318 C A ACVRL1 Silent p.R241R 0.26 TCGA-55-8507-01 12 52779119 52779119 C A KRT84 Missense_Mutation p.G84V 0.20 deleterious(0.01) benign(0.29) TCGA-55-8507-01 12 52967130 52967130 G T KRT74 Silent p.I144I 0.23 TCGA-55-8507-01 12 52981604 52981604 G T KRT72 Missense_Mutation p.A374D 0.42 deleterious(0.01) possibly_damaging(0.857) TCGA-55-8507-01 12 54674541 54674541 C A HNRNPA1 5'UTR 0.17 TCGA-55-8507-01 12 54686346 54686346 G A NFE2 Missense_Mutation p.R312C 0.46 deleterious(0) probably_damaging(0.999) TCGA-55-8507-01 12 57556748 57556748 G T LRP1 Missense_Mutation p.D838Y 0.41 possibly_damaging(0.804) TCGA-55-8507-01 12 57589710 57589710 G T LRP1 Missense_Mutation p.Q2875H 0.42 possibly_damaging(0.701) TCGA-55-8507-01 12 57857465 57857465 C A GLI1 5'UTR 0.42 TCGA-55-8507-01 12 64173754 64173754 G T TMEM5 Missense_Mutation p.R5L 0.40 tolerated(0.62) possibly_damaging(0.852) TCGA-55-8507-01 12 76740607 76740607 C G BBS10 Missense_Mutation p.L386F 0.13 tolerated(0.67) benign(0.441) TCGA-55-8507-01 12 81331542 81331542 G T LIN7A 5'UTR 0.25 TCGA-55-8507-01 12 82850504 82850504 A T METTL25 Splice_Site p.X493_splice 0.40 TCGA-55-8507-01 12 9310390 9310390 G T PZP Silent p.A1114A 0.48 TCGA-55-8507-01 13 110827609 110827609 C A COL4A1 Missense_Mutation p.A1052S 0.27 possibly_damaging(0.549) TCGA-55-8507-01 13 110827610 110827610 C A COL4A1 Missense_Mutation p.Q1051H 0.27 probably_damaging(0.966) TCGA-55-8507-01 13 110830259 110830259 G T COL4A1 Silent p.G882G 0.26 TCGA-55-8507-01 13 111176302 111176302 C T RAB20 Missense_Mutation p.D139N 0.24 tolerated(0.48) benign(0) TCGA-55-8507-01 13 114149884 114149884 C T TMCO3 5'UTR 0.29 TCGA-55-8507-01 13 28599077 28599077 C T FLT3 Missense_Mutation p.M737I 0.24 tolerated(0.34) benign(0.005) TCGA-55-8507-01 13 29598871 29598871 C T MTUS2 Silent p.Y22Y 0.25 TCGA-55-8507-01 13 36141048 36141048 C T NBEA Missense_Mutation p.T2310I 0.16 deleterious(0) probably_damaging(1) TCGA-55-8507-01 13 42763331 42763331 G T DGKH Missense_Mutation p.G600W 0.33 deleterious(0.02) possibly_damaging(0.447) TCGA-55-8507-01 13 46543898 46543898 C G ZC3H13 Silent p.L927L 0.24 TCGA-55-8507-01 13 53420390 53420390 C A PCDH8 Nonsense_Mutation p.E728* 0.39 TCGA-55-8507-01 13 53617375 53617375 G T OLFM4 Missense_Mutation p.V236F 0.31 tolerated(0.7) benign(0.071) TCGA-55-8507-01 13 60616826 60616826 C A DIAPH3 Silent p.V208V 0.31 TCGA-55-8507-01 13 64321218 64321218 G T AL445989.1 Silent p.G95G 0.23 TCGA-55-8507-01 13 76381635 76381635 G C LMO7 Missense_Mutation p.A173P 0.42 deleterious(0) probably_damaging(0.994) TCGA-55-8507-01 13 78218491 78218491 G T SCEL 3'UTR 0.23 TCGA-55-8507-01 13 79918847 79918847 G T RBM26 Missense_Mutation p.S687Y 0.17 deleterious(0.02) benign(0.011) TCGA-55-8507-01 13 92345609 92345609 G A GPC5 Missense_Mutation p.R165K 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-55-8507-01 13 95858879 95858879 C G ABCC4 Silent p.T356T 0.28 TCGA-55-8507-01 14 104565240 104565240 G A ASPG Silent p.K188K 0.29 TCGA-55-8507-01 14 106311905 106311905 G T IGHD Missense_Mutation p.T36K 0.43 tolerated(1) benign(0) TCGA-55-8507-01 14 106757909 106757909 G T IGHV2-26 Missense_Mutation p.P33H 0.40 deleterious(0) probably_damaging(0.978) TCGA-55-8507-01 14 106780916 106780916 C G IGHV4-28 Silent p.L10L 0.10 TCGA-55-8507-01 14 106866707 106866707 C A IGHV3-38 Missense_Mutation p.G16V 0.06 deleterious_low_confidence(0) possibly_damaging(0.806) TCGA-55-8507-01 14 20502472 20502472 T C OR4K13 Missense_Mutation p.Y149C 0.22 deleterious(0) probably_damaging(0.926) TCGA-55-8507-01 14 20692448 20692448 C A OR11H6 Missense_Mutation p.H194N 0.39 deleterious(0.01) probably_damaging(1) TCGA-55-8507-01 14 20845913 20845913 C A TEP1 Splice_Site p.X1908_splice 0.35 TCGA-55-8507-01 14 22038360 22038360 G T OR10G3 Silent p.P172P 0.09 TCGA-55-8507-01 14 22363079 22363079 A T TRAV8-4 Silent p.T70T 0.24 TCGA-55-8507-01 14 22564735 22564735 C G TRDV1 Missense_Mutation p.S62R 0.30 tolerated(0.09) benign(0.107) TCGA-55-8507-01 14 23451606 23451606 C A AJUBA 5'UTR 0.27 TCGA-55-8507-01 14 23900659 23900659 G T MYH7 Missense_Mutation p.T255K 0.39 deleterious(0.02) benign(0.046) TCGA-55-8507-01 14 24900869 24900869 G T KHNYN Silent p.R134R 0.27 TCGA-55-8507-01 14 25325156 25325156 G C STXBP6 Missense_Mutation p.S146C 0.24 deleterious(0.01) benign(0.436) TCGA-55-8507-01 14 28733780 28733780 C T BNIP3P1 RNA 0.29 TCGA-55-8507-01 14 33291672 33291674 TGG CTTT AKAP6 Frame_Shift_Ins p.G1552Ffs*14 0.15 TCGA-55-8507-01 14 38679738 38679738 G A SSTR1 Missense_Mutation p.G382S 0.14 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-55-8507-01 14 44975738 44975738 C A FSCB Silent p.V151V 0.19 TCGA-55-8507-01 14 57741180 57741180 C T AP5M1 Missense_Mutation p.A98V 0.15 tolerated(0.27) benign(0.016) TCGA-55-8507-01 14 64497899 64497899 G C SYNE2 Missense_Mutation p.A2349P 0.08 probably_damaging(0.999) TCGA-55-8507-01 14 65008401 65008401 C A HSPA2 Missense_Mutation p.S278R 0.23 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-55-8507-01 14 68029533 68029533 G - PLEKHH1 Frame_Shift_Del p.A396Pfs*81 0.35 TCGA-55-8507-01 14 70634870 70634870 C T SLC8A3 Silent p.G90G 0.19 TCGA-55-8507-01 14 71575643 71575643 C A PCNX Silent p.L2208L 0.33 TCGA-55-8507-01 14 73141018 73141018 C A DPF3 Silent p.G267G 0.16 TCGA-55-8507-01 14 73576177 73576177 G T RBM25 Missense_Mutation p.D557Y 0.24 possibly_damaging(0.861) TCGA-55-8507-01 14 73664737 73664737 A G PSEN1 Splice_Site p.X257_splice 0.22 TCGA-55-8507-01 14 73716727 73716727 G T PAPLN Missense_Mutation p.G124W 0.45 deleterious(0) probably_damaging(1) TCGA-55-8507-01 14 73964917 73964917 G T HEATR4 Silent p.R830R 0.36 TCGA-55-8507-01 14 74988617 74988617 G T LTBP2 Missense_Mutation p.Q929K 0.27 tolerated(0.05) benign(0.05) TCGA-55-8507-01 14 75376450 75376450 G A RPS6KL1 Silent p.L356L 0.13 TCGA-55-8507-01 14 86088896 86088896 G T FLRT2 Silent p.R346R 0.48 TCGA-55-8507-01 14 94088296 94088296 G T UNC79 Missense_Mutation p.A1396S 0.27 tolerated_low_confidence(0.52) benign(0.001) TCGA-55-8507-01 14 94417371 94417371 T G ASB2 Missense_Mutation p.E285A 0.04 tolerated(0.29) benign(0.038) TCGA-55-8507-01 14 94505488 94505488 G A OTUB2 Intron 0.10 TCGA-55-8507-01 14 94770841 94770841 G T SERPINA6 Missense_Mutation p.R378S 0.41 tolerated(0.36) benign(0.017) TCGA-55-8507-01 14 95108036 95108036 G T SERPINA13P RNA 0.25 TCGA-55-8507-01 14 96792092 96792092 C A ATG2B Missense_Mutation p.K777N 0.31 tolerated(0.1) probably_damaging(0.966) TCGA-55-8507-01 14 96998703 96998703 C G PAPOLA Missense_Mutation p.P215A 0.31 deleterious(0) probably_damaging(0.937) TCGA-55-8507-01 15 102303144 102303144 G T DNM1P47 RNA 0.20 TCGA-55-8507-01 15 22382683 22382683 G A OR4N4 Missense_Mutation p.A71T 0.15 deleterious(0.01) possibly_damaging(0.611) TCGA-55-8507-01 15 25436486 25436486 C T SNORD115-11 3'Flank 0.29 TCGA-55-8507-01 15 25463844 25463844 C A SNORD115-27 5'Flank 0.30 TCGA-55-8507-01 15 25924950 25924950 G A ATP10A Silent p.T1346T 0.19 TCGA-55-8507-01 15 25940198 25940198 C T ATP10A Missense_Mutation p.M952I 0.26 tolerated(0.46) benign(0) TCGA-55-8507-01 15 27128598 27128598 C A GABRA5 Missense_Mutation p.P131T 0.20 deleterious(0) probably_damaging(1) TCGA-55-8507-01 15 27772656 27772656 G T GABRG3 Missense_Mutation p.A315S 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-55-8507-01 15 30919108 30919108 C G ARHGAP11B Missense_Mutation p.Q29E 0.26 tolerated(0.51) benign(0.002) TCGA-55-8507-01 15 33822840 33822841 TC - RYR3 Frame_Shift_Del p.L110Pfs*26 0.24 TCGA-55-8507-01 15 33873717 33873717 G T RYR3 Missense_Mutation p.L482F 0.40 probably_damaging(0.96) TCGA-55-8507-01 15 33936604 33936604 G T RYR3 Missense_Mutation p.G1217C 0.23 probably_damaging(1) TCGA-55-8507-01 15 34018622 34018622 C T RYR3 Silent p.I2316I 0.50 TCGA-55-8507-01 15 34105726 34105726 G T RYR3 Missense_Mutation p.R3483L 0.18 probably_damaging(0.96) TCGA-55-8507-01 15 34646811 34646811 G C NUTM1 Missense_Mutation p.G386R 0.21 tolerated(0.16) benign(0.232) TCGA-55-8507-01 15 35044956 35044956 T C GJD2 Missense_Mutation p.E230G 0.23 deleterious(0.01) possibly_damaging(0.614) TCGA-55-8507-01 15 38808404 38808404 C A RASGRP1 Missense_Mutation p.R223S 0.17 tolerated(0.06) possibly_damaging(0.475) TCGA-55-8507-01 15 41689187 41689187 A - NDUFAF1 Frame_Shift_Del p.L24Cfs*48 0.21 TCGA-55-8507-01 15 41827128 41827128 C T RPAP1 Missense_Mutation p.V183M 0.15 tolerated(0.26) benign(0.032) TCGA-55-8507-01 15 41860421 41860421 C A TYRO3 Missense_Mutation p.A323D 0.16 tolerated(0.58) benign(0.097) TCGA-55-8507-01 15 41862464 41862464 G A TYRO3 Missense_Mutation p.R470Q 0.21 tolerated(0.21) benign(0.004) TCGA-55-8507-01 15 43513015 43513015 C A EPB42 Missense_Mutation p.Q3H 0.26 tolerated_low_confidence(0.13) possibly_damaging(0.891) TCGA-55-8507-01 15 43816308 43816322 TACTGAAGCTACGCA - MAP1A In_Frame_Del p.T880_Q884del 0.37 TCGA-55-8507-01 15 45656215 45656215 C A GATM Splice_Site p.X348_splice 0.22 TCGA-55-8507-01 15 48062887 48062887 C A SEMA6D Missense_Mutation p.D709E 0.26 tolerated(0.29) probably_damaging(0.989) TCGA-55-8507-01 15 52404576 52404576 G T BCL2L10 Silent p.A116A 0.15 TCGA-55-8507-01 15 54306093 54306093 T A UNC13C Missense_Mutation p.F331L 0.13 tolerated_low_confidence(0.76) benign(0.001) TCGA-55-8507-01 15 57544619 57544619 A G TCF12 Missense_Mutation p.K397E 0.21 tolerated(0.2) possibly_damaging(0.54) TCGA-55-8507-01 15 58834025 58834025 C G LIPC Silent p.A105A 0.17 TCGA-55-8507-01 15 66215289 66215289 G T MEGF11 Missense_Mutation p.T565K 0.18 deleterious(0.03) benign(0.021) TCGA-55-8507-01 15 73409057 73409057 C A NEO1 Missense_Mutation p.L103I 0.36 tolerated(0.74) benign(0.074) TCGA-55-8507-01 15 78765680 78765680 A T IREB2 Missense_Mutation p.N327I 0.45 tolerated(0.09) possibly_damaging(0.819) TCGA-55-8507-01 15 79058452 79058452 G T ADAMTS7 Silent p.A1267A 0.54 TCGA-55-8507-01 15 89401396 89401396 C A ACAN Silent p.S1860S 0.70 TCGA-55-8507-01 15 89873443 89873443 C A POLG Missense_Mutation p.A242S 0.23 tolerated(0.55) benign(0.034) TCGA-55-8507-01 15 89873444 89873444 C A POLG Silent p.P241P 0.23 TCGA-55-8507-01 15 91504945 91504945 C A RCCD1 Silent p.V359V 0.06 TCGA-55-8507-01 15 92671681 92671681 A T SLCO3A1 Missense_Mutation p.T492S 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-55-8507-01 16 10274211 10274211 C A GRIN2A Missense_Mutation p.G20C 0.19 deleterious_low_confidence(0.02) benign(0.371) TCGA-55-8507-01 16 1388913 1388913 G T BAIAP3 Missense_Mutation p.D83Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-55-8507-01 16 19552100 19552100 A C CCP110 Missense_Mutation p.R680S 0.27 deleterious(0.01) benign(0.165) TCGA-55-8507-01 16 19883616 19883616 G T GPRC5B Silent p.T184T 0.19 TCGA-55-8507-01 16 20370547 20370547 C T PDILT 3'UTR 0.45 TCGA-55-8507-01 16 20948106 20948106 G A DNAH3 Silent p.S3908S 0.25 TCGA-55-8507-01 16 20974909 20974909 G C DNAH3 Missense_Mutation p.H3433D 0.23 tolerated(0.14) benign(0) TCGA-55-8507-01 16 23999854 23999854 G T PRKCB Silent p.R77R 0.26 TCGA-55-8507-01 16 24046812 24046812 G T PRKCB Missense_Mutation p.R158L 0.27 tolerated(0.07) benign(0.18) TCGA-55-8507-01 16 24950784 24950784 G A ARHGAP17 Missense_Mutation p.P542L 0.31 tolerated_low_confidence(0.16) benign(0.003) TCGA-55-8507-01 16 25239930 25239930 T A AQP8 3'UTR 0.33 TCGA-55-8507-01 16 25704227 25704227 G C HS3ST4 Missense_Mutation p.E163D 0.22 tolerated_low_confidence(0.09) possibly_damaging(0.546) TCGA-55-8507-01 16 2764226 2764226 G T PRSS27 Nonsense_Mutation p.Y116* 0.23 TCGA-55-8507-01 16 28922235 28922235 C A RABEP2 Missense_Mutation p.A355S 0.17 tolerated(0.07) probably_damaging(0.959) TCGA-55-8507-01 16 29675594 29675594 C A SPN Missense_Mutation p.T182N 0.31 deleterious(0.01) possibly_damaging(0.895) TCGA-55-8507-01 16 30732218 30732218 C - SRCAP Frame_Shift_Del p.P1059Rfs*35 0.33 TCGA-55-8507-01 16 31332905 31332905 C T ITGAM Silent p.V654V 0.28 TCGA-55-8507-01 16 3843558 3843558 C A CREBBP Nonsense_Mutation p.E349* 0.20 TCGA-55-8507-01 16 4242033 4242033 C T SRL 3'UTR 0.40 TCGA-55-8507-01 16 48221329 48221329 A C ABCC11 Missense_Mutation p.C906G 0.25 tolerated(0.13) benign(0.033) TCGA-55-8507-01 16 4934324 4934324 C T PPL Silent p.T1444T 0.30 TCGA-55-8507-01 16 49559312 49559312 C A ZNF423 Missense_Mutation p.G1224V 0.29 deleterious(0) possibly_damaging(0.852) TCGA-55-8507-01 16 55725959 55725959 G T SLC6A2 Missense_Mutation p.A305S 0.18 tolerated(0.43) benign(0.151) TCGA-55-8507-01 16 55886846 55886846 A C CES5A Missense_Mutation p.L436R 0.12 deleterious(0) probably_damaging(0.989) TCGA-55-8507-01 16 58075663 58075663 C T MMP15 Silent p.G351G 0.31 TCGA-55-8507-01 16 632949 632949 A G PIGQ Missense_Mutation p.Q533R 0.38 tolerated_low_confidence(0.13) benign(0.027) TCGA-55-8507-01 16 65032573 65032573 G T CDH11 Missense_Mutation p.L139M 0.07 tolerated(0.08) probably_damaging(0.998) TCGA-55-8507-01 16 67410734 67410734 C A LRRC36 Missense_Mutation p.L589I 0.29 tolerated(0.23) benign(0.003) TCGA-55-8507-01 16 74524932 74524932 C T GLG1 Silent p.E472E 0.28 TCGA-55-8507-01 16 75512560 75512560 G T CHST6 Silent p.T389T 0.30 TCGA-55-8507-01 16 75633991 75633991 C A ADAT1 3'UTR 0.22 TCGA-55-8507-01 16 76495944 76495944 T A CNTNAP4 Silent p.S402S 0.30 TCGA-55-8507-01 16 77387641 77387641 C A ADAMTS18 Missense_Mutation p.G535C 0.33 deleterious(0) benign(0.438) TCGA-55-8507-01 16 78062087 78062087 G T CLEC3A Missense_Mutation p.V76F 0.18 deleterious(0) probably_damaging(1) TCGA-55-8507-01 16 79245641 79245641 G T WWOX Missense_Mutation p.W398L 0.34 deleterious(0) probably_damaging(0.991) TCGA-55-8507-01 16 81167264 81167264 C T PKD1L2 RNA 0.22 TCGA-55-8507-01 16 81730186 81730186 G T CMIP Missense_Mutation p.V518L 0.36 tolerated(0.08) benign(0.119) TCGA-55-8507-01 16 82182456 82182456 C A MPHOSPH6 Missense_Mutation p.L121F 0.22 deleterious(0) possibly_damaging(0.87) TCGA-55-8507-01 16 84163261 84163261 C A HSDL1 Silent p.L262L 0.20 TCGA-55-8507-01 16 85945181 85945181 C A IRF8 Missense_Mutation p.L122I 0.26 tolerated(0.28) benign(0.285) TCGA-55-8507-01 17 10223780 10223780 G C MYH13 Missense_Mutation p.R1049G 0.28 deleterious(0.01) benign(0.131) TCGA-55-8507-01 17 10356471 10356471 C A MYH4 Missense_Mutation p.D1037Y 0.67 deleterious(0) probably_damaging(1) TCGA-55-8507-01 17 10366945 10366945 G A MYH4 Nonsense_Mutation p.Q222* 0.67 TCGA-55-8507-01 17 10368836 10368836 T A MYH4 Missense_Mutation p.Y143F 0.73 deleterious(0.04) probably_damaging(0.945) TCGA-55-8507-01 17 11502192 11502192 C A DNAH9 Missense_Mutation p.P126H 0.67 possibly_damaging(0.497) TCGA-55-8507-01 17 11607522 11607522 G T DNAH9 Silent p.V1718V 0.67 TCGA-55-8507-01 17 11726175 11726175 C A DNAH9 Missense_Mutation p.Q3024K 0.16 benign(0.002) TCGA-55-8507-01 17 15641387 15641387 A T TBC1D26 Missense_Mutation p.K92M 0.76 deleterious(0) possibly_damaging(0.533) TCGA-55-8507-01 17 1798347 1798347 A G RPA1 Silent p.R568R 0.47 TCGA-55-8507-01 17 18221417 18221417 T A SMCR8 Missense_Mutation p.L772M 0.75 deleterious(0.01) probably_damaging(0.999) TCGA-55-8507-01 17 18226354 18226354 C T SMCR8 Silent p.D928D 0.62 TCGA-55-8507-01 17 21319773 21319773 C A KCNJ12 Missense_Mutation p.N373K 0.17 tolerated(0.13) benign(0.177) TCGA-55-8507-01 17 21826323 21826323 C G FAM27L RNA 0.47 TCGA-55-8507-01 17 2595880 2595880 C G CLUH Missense_Mutation p.E1102D 0.26 tolerated(0.2) benign(0.05) TCGA-55-8507-01 17 27400977 27400977 G A TIAF1 Missense_Mutation p.P81S 0.15 tolerated_low_confidence(0.15) possibly_damaging(0.803) TCGA-55-8507-01 17 29159217 29159217 C T ATAD5 5'UTR 0.48 TCGA-55-8507-01 17 29161767 29161767 C T ATAD5 Missense_Mutation p.A223V 0.09 tolerated(0.2) benign(0.193) TCGA-55-8507-01 17 33520765 33520765 A T SLC35G3 Missense_Mutation p.Y188N 0.47 tolerated(0.14) possibly_damaging(0.646) TCGA-55-8507-01 17 33807058 33807058 C A SLFN12L Missense_Mutation p.Q57H 0.22 deleterious(0.01) benign(0.01) TCGA-55-8507-01 17 34233609 34233609 G T AC015849.16 RNA 0.45 TCGA-55-8507-01 17 39578661 39578661 A T KRT37 Missense_Mutation p.L253Q 0.48 deleterious(0) possibly_damaging(0.728) TCGA-55-8507-01 17 40857175 40857175 C T EZH1 Silent p.V622V 0.24 TCGA-55-8507-01 17 42398482 42398482 C A SLC25A39 Missense_Mutation p.W212L 0.22 tolerated(0.32) benign(0.03) TCGA-55-8507-01 17 42849175 42849175 G T ADAM11 Silent p.V173V 0.16 TCGA-55-8507-01 17 42992646 42992646 C T GFAP Missense_Mutation p.R70Q 0.47 deleterious(0) benign(0.378) TCGA-55-8507-01 17 4799509 4799509 C T MINK1 Missense_Mutation p.R1163C 0.09 deleterious(0) probably_damaging(0.996) TCGA-55-8507-01 17 48271988 48271988 C A COL1A1 Splice_Site p.X488_splice 0.50 TCGA-55-8507-01 17 50235278 50235278 C A CA10 5'UTR 0.20 TCGA-55-8507-01 17 59482616 59482616 G T TBX2 Nonsense_Mutation p.E369* 0.20 TCGA-55-8507-01 17 59878761 59878761 C A BRIP1 Missense_Mutation p.M331I 0.50 tolerated(0.25) benign(0.012) TCGA-55-8507-01 17 61950595 61950595 C T CSH2 Missense_Mutation p.A39T 0.14 deleterious(0.05) benign(0.026) TCGA-55-8507-01 17 61957664 61957664 G C GH2 3'UTR 0.11 TCGA-55-8507-01 17 61988301 61988301 G T CSHL1 Intron 0.22 TCGA-55-8507-01 17 65184466 65184466 T A HELZ Missense_Mutation p.Q377H 0.17 deleterious(0) probably_damaging(0.94) TCGA-55-8507-01 17 66364843 66364843 G T ARSG Missense_Mutation p.V287F 0.12 deleterious(0.01) benign(0.089) TCGA-55-8507-01 17 67047172 67047172 C A ABCA9 Missense_Mutation p.L32F 0.13 tolerated(0.06) possibly_damaging(0.836) TCGA-55-8507-01 17 7130424 7130424 C A DVL2 Missense_Mutation p.G510C 0.17 deleterious(0) probably_damaging(0.984) TCGA-55-8507-01 17 72700893 72700893 A G CD300LF Silent p.L36L 0.19 TCGA-55-8507-01 17 72840455 72840455 G T GRIN2C Missense_Mutation p.P848H 0.14 tolerated(0.09) benign(0.046) TCGA-55-8507-01 17 73663476 73663476 G T SAP30BP Silent p.L8L 0.17 TCGA-55-8507-01 17 74732645 74732645 G T MFSD11 5'UTR 0.21 TCGA-55-8507-01 17 75316332 75316332 C T SEPT9 Intron 0.09 TCGA-55-8507-01 17 7576897 7576897 G A TP53 Nonsense_Mutation p.Q317* 0.75 TCGA-55-8507-01 17 76533554 76533554 C T DNAH17 Missense_Mutation p.A896T 0.38 benign(0.022) TCGA-55-8507-01 17 7719912 7719912 A G DNAH2 Silent p.L3251L 0.62 TCGA-55-8507-01 17 78175557 78175557 C A CARD14 Silent p.A622A 0.24 TCGA-55-8507-01 17 79684787 79684787 G A SLC25A10 Missense_Mutation p.A210T 0.11 deleterious(0.02) benign(0) TCGA-55-8507-01 17 80332563 80332563 G - UTS2R Frame_Shift_Del p.G122Afs*11 0.43 TCGA-55-8507-01 17 9820593 9820593 G T GAS7 Silent p.V461V 0.53 TCGA-55-8507-01 17 9923167 9923167 G A GAS7 Silent p.V77V 0.48 TCGA-55-8507-01 18 202918 202918 G T USP14 Missense_Mutation p.L305F 0.19 deleterious(0) probably_damaging(0.999) TCGA-55-8507-01 18 28602457 28602457 C A DSC3 Missense_Mutation p.G263W 0.30 deleterious(0.01) possibly_damaging(0.822) TCGA-55-8507-01 18 28667706 28667706 T A DSC2 Missense_Mutation p.E234V 0.29 deleterious(0) probably_damaging(0.991) TCGA-55-8507-01 18 28992864 28992864 G C DSG4 Missense_Mutation p.G829A 0.24 deleterious(0.02) probably_damaging(1) TCGA-55-8507-01 18 29056226 29056226 A C DSG3 3'UTR 0.30 TCGA-55-8507-01 18 3071838 3071838 C T MYOM1 Silent p.E1586E 0.30 TCGA-55-8507-01 18 39647373 39647373 G T PIK3C3 Missense_Mutation p.D849Y 0.32 deleterious(0) probably_damaging(0.922) TCGA-55-8507-01 18 48255741 48255741 C A MAPK4 Silent p.S427S 0.31 TCGA-55-8507-01 18 54694276 54694276 G T WDR7 Silent p.S1437S 0.26 TCGA-55-8507-01 18 56204234 56204234 C A ALPK2 Missense_Mutation p.S1062I 0.28 tolerated(0.05) benign(0.02) TCGA-55-8507-01 18 56247368 56247368 C A ALPK2 Missense_Mutation p.G214W 0.30 deleterious(0) probably_damaging(0.996) TCGA-55-8507-01 18 61602215 61602215 G T SERPINB10 Missense_Mutation p.M311I 0.22 tolerated(0.23) benign(0.046) TCGA-55-8507-01 18 65178365 65178365 T C DSEL Missense_Mutation p.T1171A 0.52 tolerated(0.17) possibly_damaging(0.797) TCGA-55-8507-01 18 67671377 67671377 C A RTTN 3'UTR 0.52 TCGA-55-8507-01 18 6956685 6956685 C A LAMA1 Missense_Mutation p.A2682S 0.27 tolerated(0.71) benign(0.015) TCGA-55-8507-01 18 6956686 6956686 C T LAMA1 Silent p.L2681L 0.27 TCGA-55-8507-01 18 7050767 7050767 G T LAMA1 Missense_Mutation p.P172T 0.22 deleterious(0) probably_damaging(1) TCGA-55-8507-01 18 70532073 70532073 G T NETO1 Missense_Mutation p.P64T 0.35 deleterious(0.01) probably_damaging(1) TCGA-55-8507-01 18 74607114 74607114 C T ZNF236 Silent p.F519F 0.41 TCGA-55-8507-01 18 76753939 76753939 G - SALL3 Frame_Shift_Del p.L652Cfs*2 0.52 TCGA-55-8507-01 18 76757009 76757009 A T SALL3 Missense_Mutation p.Q1197L 0.11 deleterious(0) probably_damaging(0.997) TCGA-55-8507-01 18 77089301 77089301 G A ATP9B Missense_Mutation p.R645K 0.39 tolerated(0.48) benign(0.003) TCGA-55-8507-01 18 77089302 77089302 G T ATP9B Missense_Mutation p.R645S 0.39 deleterious(0.01) benign(0.092) TCGA-55-8507-01 19 10405245 10405245 C G ICAM5 Missense_Mutation p.A720G 0.34 tolerated(0.06) probably_damaging(0.98) TCGA-55-8507-01 19 1207139 1207139 C - STK11 Frame_Shift_Del p.V77Sfs*19 0.56 TCGA-55-8507-01 19 14593637 14593637 G A GIPC1 Missense_Mutation p.P51L 0.39 tolerated(0.06) benign(0.002) TCGA-55-8507-01 19 1462064 1462064 C A APC2 Missense_Mutation p.L581M 0.63 probably_damaging(0.999) TCGA-55-8507-01 19 15067397 15067397 C A SLC1A6 Missense_Mutation p.A354S 0.24 tolerated(0.53) benign(0.003) TCGA-55-8507-01 19 15574969 15574969 G T RASAL3 Missense_Mutation p.F67L 0.33 deleterious(0) probably_damaging(0.993) TCGA-55-8507-01 19 15904995 15904995 T A OR10H5 Missense_Mutation p.M46K 0.29 deleterious(0) possibly_damaging(0.741) TCGA-55-8507-01 19 15905577 15905577 C G OR10H5 Missense_Mutation p.S240C 0.41 deleterious(0.01) benign(0.405) TCGA-55-8507-01 19 15905578 15905578 C A OR10H5 Silent p.S240S 0.44 TCGA-55-8507-01 19 17056482 17056482 G A CPAMD8 Silent p.A937A 0.29 TCGA-55-8507-01 19 17954601 17954601 A C JAK3 Missense_Mutation p.L98R 0.37 deleterious(0) probably_damaging(0.976) TCGA-55-8507-01 19 18391641 18391641 T A JUND Missense_Mutation p.E218D 0.33 tolerated(0.79) benign(0.004) TCGA-55-8507-01 19 19339188 19339188 G A NCAN Missense_Mutation p.S920N 0.57 tolerated(0.35) benign(0.02) TCGA-55-8507-01 19 20117565 20117565 C A ZNF682 Missense_Mutation p.R249I 0.46 tolerated(0.4) possibly_damaging(0.764) TCGA-55-8507-01 19 21366536 21366536 T G ZNF431 Missense_Mutation p.I477S 0.10 deleterious(0.01) possibly_damaging(0.538) TCGA-55-8507-01 19 22272228 22272228 C A ZNF257 Missense_Mutation p.T559N 0.57 tolerated(0.14) benign(0.029) TCGA-55-8507-01 19 23159647 23159647 C G ZNF728 Missense_Mutation p.K164N 0.15 tolerated(0.09) benign(0.177) TCGA-55-8507-01 19 2418110 2418110 C A TMPRSS9 Missense_Mutation p.L676M 0.57 tolerated(0.07) possibly_damaging(0.872) TCGA-55-8507-01 19 30934506 30934506 G T ZNF536 Missense_Mutation p.A13S 0.29 tolerated_low_confidence(0.05) benign(0.123) TCGA-55-8507-01 19 30935767 30935767 G T ZNF536 Missense_Mutation p.C433F 0.35 deleterious(0) probably_damaging(0.996) TCGA-55-8507-01 19 34263786 34263786 C A CHST8 Missense_Mutation p.P365T 0.64 deleterious(0.01) probably_damaging(1) TCGA-55-8507-01 19 36113570 36113570 G T HAUS5 Missense_Mutation p.R573S 0.15 deleterious(0.01) benign(0.234) TCGA-55-8507-01 19 37676230 37676230 G A ZNF585B Nonsense_Mutation p.Q737* 0.14 TCGA-55-8507-01 19 37676893 37676893 G C ZNF585B Missense_Mutation p.H516D 0.19 deleterious(0) probably_damaging(0.999) TCGA-55-8507-01 19 37677006 37677006 C G ZNF585B Missense_Mutation p.R478P 0.25 deleterious(0.04) probably_damaging(0.997) TCGA-55-8507-01 19 3778359 3778359 C A MATK Missense_Mutation p.C450F 0.66 deleterious(0) probably_damaging(1) TCGA-55-8507-01 19 39804612 39804612 C A LRFN1 Missense_Mutation p.Q455H 0.50 deleterious(0.01) possibly_damaging(0.501) TCGA-55-8507-01 19 39994843 39994843 G T DLL3 Missense_Mutation p.G262V 0.49 tolerated(0.09) benign(0.017) TCGA-55-8507-01 19 40540414 40540414 C G ZNF780B Missense_Mutation p.K784N 0.19 tolerated(0.48) probably_damaging(0.937) TCGA-55-8507-01 19 4307980 4307980 G T FSD1 Missense_Mutation p.Q115H 0.29 deleterious(0) possibly_damaging(0.451) TCGA-55-8507-01 19 43093034 43093034 G T CEACAM8 Missense_Mutation p.P287H 0.23 deleterious(0.02) benign(0.262) TCGA-55-8507-01 19 43097712 43097712 A T CEACAM8 Silent p.T135T 0.13 TCGA-55-8507-01 19 43234163 43234163 C A PSG3 Missense_Mutation p.R252M 0.51 tolerated(0.23) benign(0.042) TCGA-55-8507-01 19 43529171 43529171 G C PSG11 Silent p.A34A 0.18 TCGA-55-8507-01 19 43570703 43570703 C A PSG2 3'UTR 0.12 TCGA-55-8507-01 19 43709658 43709658 G C PSG4 Missense_Mutation p.Q11E 0.67 tolerated(0.18) benign(0.023) TCGA-55-8507-01 19 44771205 44771205 C A ZNF233 Intron 0.47 TCGA-55-8507-01 19 44791599 44791599 T A ZNF235 Missense_Mutation p.E663D 0.22 deleterious(0.02) possibly_damaging(0.856) TCGA-55-8507-01 19 44933628 44933628 C A ZNF229 Missense_Mutation p.C443F 0.13 tolerated(0.26) benign(0.016) TCGA-55-8507-01 19 45029200 45029200 T C CEACAM20 RNA 0.08 TCGA-55-8507-01 19 4529105 4529105 G A PLIN5 Missense_Mutation p.P167L 0.32 deleterious(0) probably_damaging(0.958) TCGA-55-8507-01 19 45567306 45567306 C G CLASRP Silent p.R314R 0.19 TCGA-55-8507-01 19 46005305 46005305 C A PPM1N Missense_Mutation p.P419T 0.49 deleterious_low_confidence(0.05) benign(0.003) TCGA-55-8507-01 19 46295691 46295691 C A DMWD Silent p.G108G 0.58 TCGA-55-8507-01 19 4839254 4839254 C G PLIN3 Missense_Mutation p.G419R 0.18 deleterious(0) probably_damaging(1) TCGA-55-8507-01 19 49218105 49218105 T G MAMSTR Silent p.P162P 0.28 TCGA-55-8507-01 19 50979933 50979933 G A FAM71E1 5'UTR 0.27 TCGA-55-8507-01 19 51330274 51330274 T A KLK15 Missense_Mutation p.Q114L 0.33 deleterious(0.05) benign(0.245) TCGA-55-8507-01 19 52130812 52130812 G A SIGLEC5 Silent p.S395S 0.61 TCGA-55-8507-01 19 52196204 52196204 G T SPACA6P-AS RNA 0.48 TCGA-55-8507-01 19 52272557 52272557 A G FPR2 Missense_Mutation p.I216V 0.52 tolerated(0.27) benign(0.042) TCGA-55-8507-01 19 52619207 52619207 T C ZNF616 Missense_Mutation p.T404A 0.36 deleterious(0.02) possibly_damaging(0.867) TCGA-55-8507-01 19 53741789 53741789 C A ZNF677 Missense_Mutation p.S64I 0.22 tolerated(1) benign(0) TCGA-55-8507-01 19 54244621 54244621 A T MIR517C RNA 0.60 TCGA-55-8507-01 19 55107908 55107908 C A LILRA1 Missense_Mutation p.P405T 0.25 deleterious(0) possibly_damaging(0.825) TCGA-55-8507-01 19 55220465 55220465 G T AC098784.2 3'Flank 0.60 TCGA-55-8507-01 19 55220466 55220466 G T AC098784.2 3'Flank 0.62 TCGA-55-8507-01 19 55327990 55327990 G T KIR3DL1 Splice_Site p.X12_splice 0.49 TCGA-55-8507-01 19 55333048 55333048 C A KIR3DL1 Silent p.A228A 0.59 TCGA-55-8507-01 19 55441949 55441949 A T NLRP7 Missense_Mutation p.L910M 0.52 deleterious(0) probably_damaging(0.997) TCGA-55-8507-01 19 55686368 55686368 C T SYT5 Splice_Site p.X237_splice 0.31 TCGA-55-8507-01 19 55708009 55708009 C A PTPRH Missense_Mutation p.G713V 0.60 possibly_damaging(0.905) TCGA-55-8507-01 19 56312993 56312993 A T NLRP11 Missense_Mutation p.F706I 0.64 deleterious(0.02) probably_damaging(0.941) TCGA-55-8507-01 19 56388361 56388361 G T NLRP4 Splice_Site p.X842_splice 0.56 TCGA-55-8507-01 19 56423978 56423978 G T NLRP13 Nonsense_Mutation p.S402* 0.63 TCGA-55-8507-01 19 57333063 57333063 T C PEG3 Missense_Mutation p.R209G 0.29 tolerated(0.17) benign(0.015) TCGA-55-8507-01 19 57647218 57647218 C A ZIM3 Missense_Mutation p.V163L 0.31 tolerated(0.6) benign(0.01) TCGA-55-8507-01 19 57746678 57746678 A T AURKC Nonsense_Mutation p.R275* 0.36 TCGA-55-8507-01 19 58386339 58386339 T C ZNF814 Missense_Mutation p.N140S 0.24 tolerated(0.22) benign(0.099) TCGA-55-8507-01 19 5867186 5867186 C A FUT5 Missense_Mutation p.W184L 0.23 tolerated(0.65) probably_damaging(0.948) TCGA-55-8507-01 19 5867601 5867601 T - FUT5 Frame_Shift_Del p.R46Gfs*32 0.19 TCGA-55-8507-01 19 58864543 58864543 G T A1BG Missense_Mutation p.L31M 0.24 deleterious(0.03) probably_damaging(1) TCGA-55-8507-01 19 58991892 58991892 C T ZNF446 Silent p.H384H 0.52 TCGA-55-8507-01 19 6820742 6820742 C A VAV1 Missense_Mutation p.F78L 0.58 deleterious(0.02) probably_damaging(0.999) TCGA-55-8507-01 19 7591411 7591411 C G MCOLN1 Silent p.G108G 0.62 TCGA-55-8507-01 19 831733 831733 C T AZU1 Silent p.P204P 0.65 TCGA-55-8507-01 19 8468491 8468491 C G RAB11B 3'UTR 0.31 TCGA-55-8507-01 19 9033669 9033669 C A MUC16 Missense_Mutation p.D12090Y 0.21 possibly_damaging(0.839) TCGA-55-8507-01 19 9045874 9045874 G T MUC16 Missense_Mutation p.N11919K 0.55 benign(0.007) TCGA-55-8507-01 19 9056288 9056288 G T MUC16 Missense_Mutation p.S10386R 0.10 benign(0.016) TCGA-55-8507-01 1 101198091 101198091 G T VCAM1 Missense_Mutation p.R548M 0.25 deleterious(0) probably_damaging(0.943) TCGA-55-8507-01 1 103461461 103461461 C A COL11A1 Missense_Mutation p.A767S 0.33 unknown(0) TCGA-55-8507-01 1 104114366 104114366 G C AMY2B Missense_Mutation p.A48P 0.42 deleterious(0) probably_damaging(0.923) TCGA-55-8507-01 1 107599959 107599959 T C PRMT6 Missense_Mutation p.W208R 0.26 deleterious(0) probably_damaging(0.997) TCGA-55-8507-01 1 108686309 108686309 T C SLC25A24 Silent p.V318V 0.44 TCGA-55-8507-01 1 109395223 109395223 C - AKNAD1 Frame_Shift_Del p.D22Tfs*7 0.26 TCGA-55-8507-01 1 110085658 110085658 C A GPR61 Missense_Mutation p.P5H 0.34 tolerated(0.14) unknown(0) TCGA-55-8507-01 1 110738362 110738362 C A SLC6A17 Silent p.T549T 0.45 TCGA-55-8507-01 1 110950293 110950293 C T LAMTOR5 Missense_Mutation p.E66K 0.24 tolerated_low_confidence(0.11) benign(0.02) TCGA-55-8507-01 1 111060234 111060234 T A KCNA10 Silent p.A392A 0.21 TCGA-55-8507-01 1 112042962 112042962 G T ADORA3 Intron 0.30 TCGA-55-8507-01 1 11596400 11596400 A G PTCHD2 Missense_Mutation p.Q1279R 0.49 tolerated(0.2) benign(0.048) TCGA-55-8507-01 1 11985904 11985904 G A KIAA2013 Silent p.L131L 0.33 TCGA-55-8507-01 1 120300040 120300040 G T HMGCS2 Missense_Mutation p.T291N 0.29 tolerated(0.11) probably_damaging(1) TCGA-55-8507-01 1 150235698 150235698 C A CA14 Missense_Mutation p.L241M 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-55-8507-01 1 151491788 151491788 C A CGN Missense_Mutation p.R265S 0.23 tolerated(0.23) benign(0.13) TCGA-55-8507-01 1 152058486 152058486 C A TCHHL1 Missense_Mutation p.G558C 0.18 deleterious(0) possibly_damaging(0.807) TCGA-55-8507-01 1 152081243 152081243 C G TCHH Missense_Mutation p.D1484H 0.19 unknown(0) TCGA-55-8507-01 1 152278846 152278846 C G FLG Missense_Mutation p.R2839T 0.10 benign(0.001) TCGA-55-8507-01 1 152281402 152281402 C A FLG Missense_Mutation p.R1987L 0.36 benign(0.25) TCGA-55-8507-01 1 152282296 152282296 G A FLG Missense_Mutation p.A1689V 0.17 possibly_damaging(0.787) TCGA-55-8507-01 1 152538426 152538426 C T LCE3E Missense_Mutation p.G87S 0.17 tolerated_low_confidence(0.86) unknown(0) TCGA-55-8507-01 1 152732403 152732403 C A KPRP Nonsense_Mutation p.C113* 0.41 TCGA-55-8507-01 1 152748919 152748919 C A LCE1F Nonsense_Mutation p.C24* 0.26 TCGA-55-8507-01 1 153275019 153275019 G C PGLYRP3 Missense_Mutation p.N198K 0.17 tolerated(0.38) benign(0.026) TCGA-55-8507-01 1 153932648 153932648 G C SLC39A1 Missense_Mutation p.Q301E 0.07 tolerated(0.62) benign(0.095) TCGA-55-8507-01 1 154318006 154318006 T A ATP8B2 Nonsense_Mutation p.C926* 0.11 TCGA-55-8507-01 1 154744705 154744705 C A KCNN3 Silent p.R398R 0.68 TCGA-55-8507-01 1 154988082 154988082 G T ZBTB7B Missense_Mutation p.A350S 0.10 tolerated(0.76) benign(0.133) TCGA-55-8507-01 1 155263248 155263248 G T PKLR Missense_Mutation p.A417E 0.05 deleterious(0) probably_damaging(0.989) TCGA-55-8507-01 1 15541737 15541737 G T TMEM51 Nonsense_Mutation p.E52* 0.46 TCGA-55-8507-01 1 155582963 155582963 G T MSTO1 Nonsense_Mutation p.G408* 0.57 TCGA-55-8507-01 1 156051384 156051384 C T MEX3A Missense_Mutation p.V136I 0.59 deleterious(0.01) probably_damaging(0.935) TCGA-55-8507-01 1 156314422 156314422 C T TSACC Missense_Mutation p.S29F 0.13 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-55-8507-01 1 156339067 156339067 G T RHBG Silent p.A9A 0.08 TCGA-55-8507-01 1 1565032 1565032 G T MIB2 Missense_Mutation p.R974S 0.36 deleterious(0.04) possibly_damaging(0.839) TCGA-55-8507-01 1 156526359 156526359 T C IQGAP3 Missense_Mutation p.Q419R 0.09 deleterious(0.04) possibly_damaging(0.829) TCGA-55-8507-01 1 156641616 156641616 C A NES Silent p.L788L 0.10 TCGA-55-8507-01 1 156646985 156646985 G T NES Silent p.A24A 0.79 TCGA-55-8507-01 1 156814022 156814022 C T INSRR Missense_Mutation p.G930R 0.14 tolerated(0.35) probably_damaging(0.949) TCGA-55-8507-01 1 157014261 157014261 G A ARHGEF11 5'UTR 0.27 TCGA-55-8507-01 1 158592846 158592846 C A SPTA1 Missense_Mutation p.R2016L 0.26 deleterious(0.01) benign(0.114) TCGA-55-8507-01 1 159019282 159019282 G T IFI16 Intron 0.25 TCGA-55-8507-01 1 159409940 159409940 A G OR10J1 Missense_Mutation p.Y131C 0.27 deleterious(0) possibly_damaging(0.624) TCGA-55-8507-01 1 159923294 159923294 G A SLAMF9 Missense_Mutation p.P66S 0.34 deleterious(0) possibly_damaging(0.876) TCGA-55-8507-01 1 160012135 160012135 T G KCNJ10 Missense_Mutation p.Q63P 0.36 tolerated(0.05) benign(0.02) TCGA-55-8507-01 1 160616684 160616684 C A SLAMF1 Missense_Mutation p.A18S 0.22 tolerated(0.06) possibly_damaging(0.893) TCGA-55-8507-01 1 16270342 16270342 G A ZBTB17 Missense_Mutation p.L474F 0.42 tolerated(0.09) possibly_damaging(0.881) TCGA-55-8507-01 1 162745581 162745581 C G DDR2 Missense_Mutation p.L666V 0.32 deleterious(0) probably_damaging(0.996) TCGA-55-8507-01 1 165398199 165398199 G T RXRG Silent p.S18S 0.14 TCGA-55-8507-01 1 166904670 166904670 C A ILDR2 Missense_Mutation p.V250F 0.34 deleterious(0) possibly_damaging(0.86) TCGA-55-8507-01 1 16735644 16735644 G A SPATA21 Silent p.S214S 0.16 TCGA-55-8507-01 1 167830267 167830267 G A ADCY10 Missense_Mutation p.H551Y 0.40 tolerated(0.24) benign(0.418) TCGA-55-8507-01 1 169100698 169100698 C T ATP1B1 Missense_Mutation p.R273C 0.15 deleterious(0.01) probably_damaging(0.983) TCGA-55-8507-01 1 171162662 171162662 G T FMO2 Missense_Mutation p.Q107H 0.13 deleterious(0.01) benign(0.025) TCGA-55-8507-01 1 172557925 172557925 C T SUCO Missense_Mutation p.H562Y 0.18 tolerated(0.34) benign(0) TCGA-55-8507-01 1 173493107 173493107 C A SLC9C2 Splice_Site p.X880_splice 0.17 TCGA-55-8507-01 1 17418973 17418973 G T PADI2 Silent p.P195P 0.43 TCGA-55-8507-01 1 175372437 175372437 C A TNR Missense_Mutation p.G272V 0.24 deleterious(0.01) possibly_damaging(0.689) TCGA-55-8507-01 1 177001599 177001599 G T ASTN1 Silent p.L286L 0.35 TCGA-55-8507-01 1 177001865 177001865 C A ASTN1 Missense_Mutation p.A198S 0.17 deleterious_low_confidence(0.02) probably_damaging(0.995) TCGA-55-8507-01 1 177199125 177199125 C A BRINP2 Missense_Mutation p.A38E 0.16 tolerated_low_confidence(0.36) benign(0.015) TCGA-55-8507-01 1 178861443 178861443 G T RALGPS2 Splice_Site p.X442_splice 0.28 TCGA-55-8507-01 1 179311997 179311997 G T SOAT1 Missense_Mutation p.S287I 0.19 tolerated(0.08) possibly_damaging(0.675) TCGA-55-8507-01 1 180885975 180885975 G T KIAA1614 Missense_Mutation p.D246Y 0.20 deleterious(0) probably_damaging(1) TCGA-55-8507-01 1 181702170 181702170 G T CACNA1E Missense_Mutation p.R983M 0.27 tolerated(0.07) possibly_damaging(0.507) TCGA-55-8507-01 1 181752920 181752920 G A CACNA1E Missense_Mutation p.G1824S 0.25 deleterious(0.01) possibly_damaging(0.855) TCGA-55-8507-01 1 182641971 182641971 C A RGS8 5'UTR 0.20 TCGA-55-8507-01 1 183259337 183259337 C T NMNAT2 Missense_Mutation p.D83N 0.36 deleterious(0) probably_damaging(0.999) TCGA-55-8507-01 1 183498036 183498036 A G SMG7 Missense_Mutation p.Y189C 0.16 deleterious(0) probably_damaging(0.998) TCGA-55-8507-01 1 186276592 186276592 C A PRG4 Missense_Mutation p.P581T 0.19 unknown(0) TCGA-55-8507-01 1 190068003 190068003 G T BRINP3 Silent p.T482T 0.32 TCGA-55-8507-01 1 192998369 192998369 C G UCHL5 Missense_Mutation p.V169L 0.26 tolerated(0.32) benign(0.036) TCGA-55-8507-01 1 1961093 1961093 C A GABRD Nonsense_Mutation p.C317* 0.52 TCGA-55-8507-01 1 1961786 1961786 G T GABRD 3'UTR 0.36 TCGA-55-8507-01 1 196227345 196227345 C A KCNT2 Missense_Mutation p.G1064C 0.11 deleterious(0.01) probably_damaging(1) TCGA-55-8507-01 1 197072796 197072796 T C ASPM Missense_Mutation p.K1862R 0.15 tolerated(0.19) benign(0.181) TCGA-55-8507-01 1 197398597 197398597 G - CRB1 Frame_Shift_Del p.G899Efs*89 0.30 TCGA-55-8507-01 1 201196323 201196323 C A IGFN1 Silent p.T3700T 0.40 TCGA-55-8507-01 1 201453892 201453892 G A CSRP1 Silent p.P177P 0.42 TCGA-55-8507-01 1 203025979 203025979 G T PPFIA4 Missense_Mutation p.A264S 0.21 tolerated(0.51) benign(0.006) TCGA-55-8507-01 1 203453271 203453271 A G PRELP Missense_Mutation p.N320S 0.08 tolerated(0.15) benign(0.388) TCGA-55-8507-01 1 205138856 205138856 G A DSTYK Silent p.H253H 0.24 TCGA-55-8507-01 1 207105834 207105834 C A PIGR Missense_Mutation p.G659W 0.20 tolerated(0.31) benign(0.037) TCGA-55-8507-01 1 212619334 212619334 A G NENF Missense_Mutation p.K169E 0.30 deleterious_low_confidence(0) possibly_damaging(0.811) TCGA-55-8507-01 1 215802297 215802297 G T USH2A Silent p.I5126I 0.14 TCGA-55-8507-01 1 215824077 215824077 G C USH2A Missense_Mutation p.P4734A 0.29 possibly_damaging(0.893) TCGA-55-8507-01 1 215853719 215853719 C T USH2A Splice_Site p.X4023_splice 0.18 TCGA-55-8507-01 1 216219796 216219796 C A USH2A Missense_Mutation p.S2101I 0.16 benign(0.001) TCGA-55-8507-01 1 216373398 216373398 T A USH2A Missense_Mutation p.T1128S 0.11 benign(0.001) TCGA-55-8507-01 1 217955535 217955535 C G SPATA17 Missense_Mutation p.T248S 0.35 tolerated(0.35) benign(0.002) TCGA-55-8507-01 1 22157722 22157722 C A HSPG2 Missense_Mutation p.D3850Y 0.30 probably_damaging(0.999) TCGA-55-8507-01 1 227843428 227843428 G T ZNF678 Nonsense_Mutation p.E493* 0.10 TCGA-55-8507-01 1 229568738 229568738 T A ACTA1 Missense_Mutation p.H42L 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.681) TCGA-55-8507-01 1 2305942 2305942 C T MORN1 Missense_Mutation p.G198R 0.25 deleterious(0) probably_damaging(0.999) TCGA-55-8507-01 1 230804426 230804426 C G COG2 Missense_Mutation p.L164V 0.35 tolerated(0.25) benign(0.022) TCGA-55-8507-01 1 23238959 23238959 C A EPHB2 Missense_Mutation p.R908S 0.28 tolerated(0.15) possibly_damaging(0.628) TCGA-55-8507-01 1 232581362 232581362 C A SIPA1L2 Missense_Mutation p.R1089L 0.38 deleterious(0.04) possibly_damaging(0.734) TCGA-55-8507-01 1 234041281 234041281 G A SLC35F3 Missense_Mutation p.M20I 0.26 deleterious_low_confidence(0.02) probably_damaging(0.946) TCGA-55-8507-01 1 23520331 23520331 G A HTR1D Missense_Mutation p.H128Y 0.53 deleterious(0) probably_damaging(0.998) TCGA-55-8507-01 1 235914598 235914598 T A LYST Silent p.A2564A 0.30 TCGA-55-8507-01 1 23689596 23689596 T - ZNF436 Frame_Shift_Del p.E94Rfs*16 0.39 TCGA-55-8507-01 1 237580424 237580424 G C RYR2 Splice_Site p.X283_splice 0.17 TCGA-55-8507-01 1 237666753 237666753 C A RYR2 Missense_Mutation p.T854K 0.44 benign(0.293) TCGA-55-8507-01 1 237666754 237666754 A G RYR2 Silent p.T854T 0.43 TCGA-55-8507-01 1 237732509 237732509 G T RYR2 Missense_Mutation p.G1163V 0.19 probably_damaging(0.994) TCGA-55-8507-01 1 237890403 237890403 G T RYR2 Missense_Mutation p.R3581I 0.35 benign(0.266) TCGA-55-8507-01 1 237947190 237947190 C A RYR2 Missense_Mutation p.Q4060K 0.33 benign(0.038) TCGA-55-8507-01 1 237947603 237947603 C - RYR2 Frame_Shift_Del p.F4198Lfs*14 0.24 TCGA-55-8507-01 1 238090745 238090745 G T RP11-193H5.1 RNA 0.19 TCGA-55-8507-01 1 23857034 23857034 C T E2F2 Silent p.P84P 0.25 TCGA-55-8507-01 1 240071283 240071283 G T CHRM3 Missense_Mutation p.A178S 0.13 deleterious(0) possibly_damaging(0.702) TCGA-55-8507-01 1 2411353 2411353 G A PLCH2 Missense_Mutation p.R124H 0.26 deleterious(0) probably_damaging(0.947) TCGA-55-8507-01 1 242013779 242013779 C T EXO1 Missense_Mutation p.H18Y 0.27 deleterious(0) probably_damaging(0.985) TCGA-55-8507-01 1 24408471 24408471 G A MYOM3 Intron 0.43 TCGA-55-8507-01 1 245530405 245530405 G A KIF26B Nonsense_Mutation p.W245* 0.37 TCGA-55-8507-01 1 247464125 247464125 T G ZNF496 Missense_Mutation p.Q487P 0.14 tolerated(0.22) benign(0.007) TCGA-55-8507-01 1 247464298 247464298 C A ZNF496 Missense_Mutation p.R429S 0.20 deleterious(0.01) benign(0.169) TCGA-55-8507-01 1 247464299 247464299 C A ZNF496 Missense_Mutation p.R429M 0.20 deleterious(0) possibly_damaging(0.789) TCGA-55-8507-01 1 247587607 247587607 C G NLRP3 Missense_Mutation p.H288D 0.14 tolerated(0.59) benign(0.004) TCGA-55-8507-01 1 247597511 247597511 G T NLRP3 Missense_Mutation p.D812Y 0.38 deleterious(0) possibly_damaging(0.905) TCGA-55-8507-01 1 248020678 248020678 T G TRIM58 Missense_Mutation p.C44G 0.25 tolerated(0.06) probably_damaging(0.948) TCGA-55-8507-01 1 248028109 248028109 G A TRIM58 Missense_Mutation p.E207K 0.19 deleterious(0) probably_damaging(0.992) TCGA-55-8507-01 1 248059551 248059551 T A OR2W3 Silent p.I221I 0.17 TCGA-55-8507-01 1 248084685 248084685 G T OR2T8 Silent p.A122A 0.09 TCGA-55-8507-01 1 248112203 248112203 G T OR2L8 Missense_Mutation p.G15V 0.14 deleterious(0) probably_damaging(0.999) TCGA-55-8507-01 1 248128649 248128649 G T OR2AK2 Missense_Mutation p.V6F 0.15 deleterious_low_confidence(0.05) benign(0.032) TCGA-55-8507-01 1 248129088 248129088 G T OR2AK2 Missense_Mutation p.S152I 0.24 deleterious(0) possibly_damaging(0.781) TCGA-55-8507-01 1 248308608 248308608 C G OR2M5 Silent p.T53T 0.17 TCGA-55-8507-01 1 248343419 248343419 C A OR2M2 Silent p.V44V 0.19 TCGA-55-8507-01 1 248343420 248343420 A T OR2M2 Missense_Mutation p.M45L 0.19 tolerated(0.28) benign(0.016) TCGA-55-8507-01 1 248366834 248366834 T C OR2M3 Silent p.D155D 0.29 TCGA-55-8507-01 1 248402454 248402454 G T OR2M4 Missense_Mutation p.C75F 0.33 tolerated(0.07) benign(0.078) TCGA-55-8507-01 1 248436715 248436715 C A OR2T33 Missense_Mutation p.M134I 0.17 deleterious(0.01) benign(0.026) TCGA-55-8507-01 1 248570020 248570020 C A OR2T1 Missense_Mutation p.T242K 0.16 tolerated(0.13) benign(0.006) TCGA-55-8507-01 1 248570265 248570265 C A OR2T1 Missense_Mutation p.L324I 0.18 deleterious(0.02) benign(0.232) TCGA-55-8507-01 1 248685623 248685623 T G OR2G6 Missense_Mutation p.L226V 0.08 deleterious(0.05) possibly_damaging(0.479) TCGA-55-8507-01 1 248813379 248813379 C T OR2T27 Silent p.E269E 0.09 TCGA-55-8507-01 1 2541198 2541198 C A MMEL1 Missense_Mutation p.G122V 0.08 deleterious(0) probably_damaging(1) TCGA-55-8507-01 1 26156050 26156050 T C MTFR1L Missense_Mutation p.S168P 0.44 deleterious(0.02) possibly_damaging(0.455) TCGA-55-8507-01 1 28477077 28477077 G A PTAFR Silent p.F152F 0.48 TCGA-55-8507-01 1 32157112 32157112 C - COL16A1 Frame_Shift_Del p.G435Efs*26 0.36 TCGA-55-8507-01 1 32265012 32265012 G A SPOCD1 Silent p.L620L 0.23 TCGA-55-8507-01 1 32670827 32670827 C A CCDC28B Missense_Mutation p.P194H 0.30 deleterious_low_confidence(0.03) possibly_damaging(0.615) TCGA-55-8507-01 1 32678382 32678382 C G DCDC2B Silent p.P234P 0.21 TCGA-55-8507-01 1 33233512 33233512 G A KIAA1522 Silent p.E120E 0.23 TCGA-55-8507-01 1 34035141 34035141 G T CSMD2 Missense_Mutation p.S2657Y 0.20 deleterious(0) probably_damaging(0.945) TCGA-55-8507-01 1 34182013 34182013 C G CSMD2 Silent p.L990L 0.23 TCGA-55-8507-01 1 34677958 34677958 C A C1orf94 Missense_Mutation p.P558T 0.18 tolerated(0.48) benign(0.01) TCGA-55-8507-01 1 34677959 34677959 C A C1orf94 Missense_Mutation p.P558H 0.19 deleterious(0.01) possibly_damaging(0.652) TCGA-55-8507-01 1 35250747 35250747 G T GJB3 Missense_Mutation p.W128C 0.42 deleterious(0) probably_damaging(0.999) TCGA-55-8507-01 1 36226021 36226021 C A CLSPN Nonsense_Mutation p.G501* 0.21 TCGA-55-8507-01 1 36226022 36226022 C A CLSPN Silent p.L500L 0.22 TCGA-55-8507-01 1 38005881 38005881 T A SNIP1 Missense_Mutation p.E268V 0.22 deleterious(0.01) benign(0.358) TCGA-55-8507-01 1 39341593 39341593 C A GJA9 Missense_Mutation p.G60C 0.06 deleterious(0) probably_damaging(1) TCGA-55-8507-01 1 39549968 39549968 C A MACF1 Nonsense_Mutation p.Y26* 0.40 TCGA-55-8507-01 1 40701729 40701729 G T RLF Missense_Mutation p.R452L 0.24 deleterious(0) probably_damaging(0.999) TCGA-55-8507-01 1 44085868 44085868 G A PTPRF Silent p.L1738L 0.30 TCGA-55-8507-01 1 44137189 44137189 C A KDM4A Silent p.S459S 0.31 TCGA-55-8507-01 1 44595814 44595814 G - KLF17 Frame_Shift_Del p.G291Efs*11 0.23 TCGA-55-8507-01 1 46654653 46654653 C T POMGNT1 Splice_Site p.X662_splice 0.18 TCGA-55-8507-01 1 55272740 55272740 G T C1orf177 Missense_Mutation p.R59L 0.28 tolerated(0.67) benign(0.004) TCGA-55-8507-01 1 6712896 6712896 C G DNAJC11 Missense_Mutation p.W208S 0.07 deleterious(0.03) possibly_damaging(0.54) TCGA-55-8507-01 1 70225887 70225887 G C LRRC7 5'UTR 0.39 TCGA-55-8507-01 1 75184942 75184942 C A CRYZ Missense_Mutation p.A127S 0.13 deleterious(0.03) probably_damaging(0.959) TCGA-55-8507-01 1 76251931 76251931 C G RABGGTB 5'UTR 0.26 TCGA-55-8507-01 1 76878047 76878047 G A ST6GALNAC3 Missense_Mutation p.E190K 0.26 probably_damaging(0.913) TCGA-55-8507-01 1 90178667 90178667 G - LRRC8C Frame_Shift_Del p.E181Rfs*13 0.33 TCGA-55-8507-01 1 92528676 92528676 G A EPHX4 Missense_Mutation p.A308T 0.28 tolerated(0.19) possibly_damaging(0.448) TCGA-55-8507-01 1 99418805 99418805 C A LPPR5 Missense_Mutation p.A148S 0.21 tolerated(0.22) possibly_damaging(0.617) TCGA-55-8507-01 1 99470055 99470055 T A LPPR5 Missense_Mutation p.E58V 0.08 deleterious(0) possibly_damaging(0.625) TCGA-55-8507-01 1 99470221 99470221 G A LPPR5 Silent p.L3L 0.20 TCGA-55-8507-01 20 1551693 1551693 C A SIRPB1 Missense_Mutation p.G281V 0.37 tolerated(0.28) benign(0.016) TCGA-55-8507-01 20 1552473 1552473 A G SIRPB1 Missense_Mutation p.V215A 0.22 tolerated(0.19) benign(0.017) TCGA-55-8507-01 20 20599997 20599997 G A RALGAPA2 Missense_Mutation p.T488I 0.40 tolerated(0.18) benign(0.025) TCGA-55-8507-01 20 264623 264623 G A C20orf96 Missense_Mutation p.A96V 0.38 deleterious(0.01) probably_damaging(0.941) TCGA-55-8507-01 20 30064325 30064325 G A REM1 Missense_Mutation p.R26Q 0.18 tolerated(0.26) benign(0.001) TCGA-55-8507-01 20 30412073 30412073 G T MYLK2 Missense_Mutation p.G297V 0.32 deleterious(0) probably_damaging(1) TCGA-55-8507-01 20 31367831 31367831 G C DNMT3B Intron 0.28 TCGA-55-8507-01 20 31644491 31644491 G A BPIFB3 Missense_Mutation p.E90K 0.12 tolerated(0.11) benign(0.069) TCGA-55-8507-01 20 31644493 31644493 G A BPIFB3 Silent p.E90E 0.11 TCGA-55-8507-01 20 31889128 31889128 G T BPIFB1 Silent p.P279P 0.34 TCGA-55-8507-01 20 32441322 32441322 G T CHMP4B Missense_Mutation p.D211Y 0.31 deleterious(0) possibly_damaging(0.459) TCGA-55-8507-01 20 33578194 33578194 C A MYH7B Intron 0.17 TCGA-55-8507-01 20 33876762 33876762 C A FAM83C Splice_Site p.X172_splice 0.34 TCGA-55-8507-01 20 34065799 34065799 C G CEP250 Missense_Mutation p.A656G 0.63 possibly_damaging(0.61) TCGA-55-8507-01 20 34843629 34843629 G A AAR2 Missense_Mutation p.V373M 0.33 deleterious(0) probably_damaging(0.953) TCGA-55-8507-01 20 35236124 35236124 T - C20orf24 Frame_Shift_Del p.L42* 0.20 TCGA-55-8507-01 20 3651942 3651942 G T ADAM33 Silent p.P678P 0.20 TCGA-55-8507-01 20 36789911 36789911 C G TGM2 Missense_Mutation p.R34P 0.39 deleterious(0) probably_damaging(1) TCGA-55-8507-01 20 36848065 36848065 G A KIAA1755 Silent p.V841V 0.15 TCGA-55-8507-01 20 36954747 36954747 C A BPI Silent p.T362T 0.16 TCGA-55-8507-01 20 40033717 40033717 G T CHD6 Nonsense_Mutation p.S2555* 0.15 TCGA-55-8507-01 20 41408901 41408901 G T PTPRT Silent p.G175G 0.16 TCGA-55-8507-01 20 42979332 42979332 T A R3HDML Missense_Mutation p.M221K 0.16 tolerated(0.29) benign(0.001) TCGA-55-8507-01 20 43034745 43034745 G T HNF4A Missense_Mutation p.G55C 0.14 deleterious(0) possibly_damaging(0.8) TCGA-55-8507-01 20 44507237 44507237 G T ZSWIM3 Missense_Mutation p.K680N 0.33 deleterious(0) benign(0.265) TCGA-55-8507-01 20 44671894 44671894 C T SLC12A5 Missense_Mutation p.P413L 0.21 tolerated(0.06) possibly_damaging(0.686) TCGA-55-8507-01 20 44815328 44815328 C A CDH22 Missense_Mutation p.S521I 0.33 deleterious(0) possibly_damaging(0.549) TCGA-55-8507-01 20 4776554 4776554 G T RASSF2 Missense_Mutation p.P65H 0.19 deleterious(0) probably_damaging(0.982) TCGA-55-8507-01 20 47852912 47852912 C T DDX27 Missense_Mutation p.H549Y 0.05 deleterious(0) probably_damaging(1) TCGA-55-8507-01 20 49621019 49621019 C T KCNG1 Missense_Mutation p.G367R 0.33 deleterious(0) probably_damaging(1) TCGA-55-8507-01 20 57829542 57829542 G T ZNF831 Missense_Mutation p.R1593I 0.39 tolerated(0.11) possibly_damaging(0.758) TCGA-55-8507-01 20 60485552 60485552 C A CDH4 Silent p.P421P 0.10 TCGA-55-8507-01 20 60835154 60835154 C A OSBPL2 Missense_Mutation p.S52Y 0.08 deleterious(0.03) benign(0.089) TCGA-55-8507-01 20 61881424 61881424 C G NKAIN4 Missense_Mutation p.V19L 0.38 tolerated(0.47) probably_damaging(0.998) TCGA-55-8507-01 20 61960995 61960995 G A COL20A1 Silent p.Q1280Q 0.19 TCGA-55-8507-01 20 62172679 62172680 - G SRMS Frame_Shift_Ins p.S384Qfs*13 0.23 TCGA-55-8507-01 20 62407222 62407222 C A ZBTB46 Missense_Mutation p.G344V 0.20 deleterious(0) possibly_damaging(0.721) TCGA-55-8507-01 20 870870 870870 C A ANGPT4 Missense_Mutation p.D151Y 0.36 deleterious(0) benign(0.408) TCGA-55-8507-01 21 15537580 15537580 A G LIPI Missense_Mutation p.C310R 0.36 deleterious(0) probably_damaging(0.997) TCGA-55-8507-01 21 15537607 15537607 C G LIPI Missense_Mutation p.D301H 0.26 deleterious(0.02) probably_damaging(0.967) TCGA-55-8507-01 21 22881297 22881297 A T NCAM2 Missense_Mutation p.I735F 0.37 deleterious(0) benign(0.424) TCGA-55-8507-01 21 26979758 26979758 C A MRPL39 Silent p.A10A 0.37 TCGA-55-8507-01 21 27056257 27056257 C G JAM2 Missense_Mutation p.Q44E 0.29 tolerated(0.33) benign(0.034) TCGA-55-8507-01 21 27348320 27348320 C - APP Frame_Shift_Del p.A416Qfs*79 0.19 TCGA-55-8507-01 21 28212707 28212707 A C ADAMTS1 Missense_Mutation p.V518G 0.47 tolerated(0.25) benign(0.009) TCGA-55-8507-01 21 31812909 31812909 G T KRTAP15-1 Missense_Mutation p.Q88H 0.29 tolerated(0.1) benign(0.287) TCGA-55-8507-01 21 31965082 31965082 T C KRTAP6-3 Silent p.F99F 0.25 TCGA-55-8507-01 21 32624249 32624249 G T TIAM1 Missense_Mutation p.A407E 0.35 tolerated(0.23) benign(0.075) TCGA-55-8507-01 21 45107682 45107682 G T RRP1B Missense_Mutation p.R476L 0.15 tolerated(0.12) probably_damaging(0.912) TCGA-55-8507-01 21 46624505 46624505 G T ADARB1 Missense_Mutation p.S574I 0.38 deleterious(0) probably_damaging(0.998) TCGA-55-8507-01 21 47630634 47630634 C T LSS Missense_Mutation p.D388N 0.18 deleterious(0) probably_damaging(1) TCGA-55-8507-01 21 47977526 47977526 G A DIP2A Missense_Mutation p.V1220M 0.14 deleterious(0) probably_damaging(0.917) TCGA-55-8507-01 22 16287870 16287870 C G POTEH Missense_Mutation p.G6R 0.36 tolerated_low_confidence(0.15) benign(0.265) TCGA-55-8507-01 22 16287928 16287928 C A POTEH 5'UTR 0.17 TCGA-55-8507-01 22 16449080 16449080 C G OR11H1 Missense_Mutation p.G242A 0.30 deleterious(0) benign(0.071) TCGA-55-8507-01 22 17072842 17072842 G A CCT8L2 Missense_Mutation p.P200L 0.28 tolerated(0.05) probably_damaging(0.916) TCGA-55-8507-01 22 24718718 24718718 G A SPECC1L Silent p.V590V 0.32 TCGA-55-8507-01 22 26830002 26830002 G T ASPHD2 Missense_Mutation p.G141C 0.31 deleterious(0) probably_damaging(1) TCGA-55-8507-01 22 28193649 28193649 C A MN1 Missense_Mutation p.K961N 0.31 probably_damaging(0.996) TCGA-55-8507-01 22 29727519 29727519 C A AP1B1 Missense_Mutation p.A815S 0.39 deleterious(0.02) benign(0.18) TCGA-55-8507-01 22 33673100 33673100 C A LARGE Missense_Mutation p.R673S 0.26 deleterious(0) probably_damaging(0.974) TCGA-55-8507-01 22 33673101 33673101 C A LARGE Missense_Mutation p.R673M 0.26 deleterious(0) probably_damaging(0.998) TCGA-55-8507-01 22 40057153 40057153 C G CACNA1I Missense_Mutation p.H913Q 0.27 deleterious(0.01) benign(0.04) TCGA-55-8507-01 22 40365424 40365424 G T GRAP2 Nonsense_Mutation p.G234* 0.23 TCGA-55-8507-01 22 44285221 44285221 G T PNPLA5 Silent p.P230P 0.20 TCGA-55-8507-01 2 106002890 106002890 G C FHL2 Missense_Mutation p.C28W 0.50 deleterious(0) probably_damaging(0.999) TCGA-55-8507-01 2 107423250 107423250 C A ST6GAL2 Missense_Mutation p.V492L 0.20 possibly_damaging(0.859) TCGA-55-8507-01 2 107423251 107423251 C G ST6GAL2 Silent p.L491L 0.20 TCGA-55-8507-01 2 111691125 111691125 G T ACOXL Missense_Mutation p.R322L 0.28 tolerated(0.05) possibly_damaging(0.743) TCGA-55-8507-01 2 113588989 113588989 G T IL1B Silent p.S159S 0.19 TCGA-55-8507-01 2 116535372 116535372 G A DPP10 Silent p.L445L 0.38 TCGA-55-8507-01 2 120125343 120125343 C T DBI Intron 0.64 TCGA-55-8507-01 2 120831675 120831675 G T EPB41L5 Splice_Site p.X110_splice 0.36 TCGA-55-8507-01 2 125262075 125262075 T A CNTNAP5 Silent p.G422G 0.08 TCGA-55-8507-01 2 125530377 125530377 T C CNTNAP5 Silent p.S844S 0.17 TCGA-55-8507-01 2 128408319 128408319 C A GPR17 Missense_Mutation p.L32I 0.15 tolerated(0.43) benign(0.001) TCGA-55-8507-01 2 128482635 128482635 C A WDR33 Missense_Mutation p.A336S 0.32 tolerated(0.31) unknown(0) TCGA-55-8507-01 2 131522063 131522063 G - AMER3 Frame_Shift_Del p.G807Afs*11 0.16 TCGA-55-8507-01 2 132021469 132021469 C A POTEE Missense_Mutation p.A814D 0.47 deleterious_low_confidence(0.01) probably_damaging(0.966) TCGA-55-8507-01 2 133014600 133014600 C A MIR663B RNA 0.20 TCGA-55-8507-01 2 133540023 133540023 G T NCKAP5 Missense_Mutation p.A1454D 0.12 tolerated(0.05) benign(0.376) TCGA-55-8507-01 2 136575099 136575099 G T LCT Missense_Mutation p.H507N 0.20 tolerated(0.29) benign(0.009) TCGA-55-8507-01 2 141214151 141214151 A G LRP1B Missense_Mutation p.I3279T 0.25 benign(0.152) TCGA-55-8507-01 2 141359072 141359072 G C LRP1B Missense_Mutation p.I2312M 0.08 benign(0.308) TCGA-55-8507-01 2 141571327 141571327 C A LRP1B Missense_Mutation p.G1753V 0.10 probably_damaging(0.953) TCGA-55-8507-01 2 141660572 141660572 C T LRP1B Missense_Mutation p.C1228Y 0.11 benign(0.384) TCGA-55-8507-01 2 143685303 143685303 C A KYNU Missense_Mutation p.D122E 0.54 tolerated(0.75) benign(0.002) TCGA-55-8507-01 2 143787193 143787193 T C KYNU Intron 0.32 TCGA-55-8507-01 2 145187465 145187465 G T ZEB2 Missense_Mutation p.H68N 0.61 tolerated(0.34) benign(0.05) TCGA-55-8507-01 2 152492824 152492824 C A NEB Nonsense_Mutation p.E3007* 0.21 TCGA-55-8507-01 2 152497098 152497098 C G NEB Missense_Mutation p.W2819S 0.16 possibly_damaging(0.895) TCGA-55-8507-01 2 152522697 152522697 G T NEB Missense_Mutation p.N1646K 0.18 possibly_damaging(0.81) TCGA-55-8507-01 2 160994645 160994645 T A ITGB6 Silent p.T391T 0.40 TCGA-55-8507-01 2 163000668 163000668 C T GCG Silent p.E135E 0.14 TCGA-55-8507-01 2 1652525 1652525 C A PXDN Missense_Mutation p.W1009C 0.31 deleterious(0) probably_damaging(1) TCGA-55-8507-01 2 168102105 168102105 A C XIRP2 Missense_Mutation p.E1401D 0.15 benign(0.024) TCGA-55-8507-01 2 170135918 170135918 C G LRP2 Missense_Mutation p.G510A 0.12 possibly_damaging(0.852) TCGA-55-8507-01 2 175979564 175979564 T A ATF2 Silent p.T160T 0.58 TCGA-55-8507-01 2 176974020 176974020 C A HOXD11 3'UTR 0.73 TCGA-55-8507-01 2 178879078 178879078 G T PDE11A Missense_Mutation p.A341E 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-55-8507-01 2 179255854 179255854 G T OSBPL6 Nonsense_Mutation p.E811* 0.16 TCGA-55-8507-01 2 179480433 179480433 C G TTN Missense_Mutation p.R16132P 0.23 TCGA-55-8507-01 2 179540667 179540667 C A TTN Missense_Mutation p.E11478D 0.50 TCGA-55-8507-01 2 179604608 179604608 A G TTN Missense_Mutation p.V4451A 0.61 TCGA-55-8507-01 2 179629513 179629513 C T TTN Silent p.Q3243Q 0.13 TCGA-55-8507-01 2 179659708 179659708 C A TTN Missense_Mutation p.A396S 0.12 TCGA-55-8507-01 2 179664283 179664283 G T TTN Missense_Mutation p.S282Y 0.12 TCGA-55-8507-01 2 185463638 185463638 C A ZNF804A 5'UTR 0.27 TCGA-55-8507-01 2 185800856 185800856 G T ZNF804A Nonsense_Mutation p.G245* 0.11 TCGA-55-8507-01 2 185800857 185800857 G T ZNF804A Missense_Mutation p.G245V 0.12 deleterious(0) probably_damaging(0.998) TCGA-55-8507-01 2 185803352 185803352 C A ZNF804A Missense_Mutation p.P1077T 0.10 tolerated(0.08) probably_damaging(0.992) TCGA-55-8507-01 2 185803353 185803353 C A ZNF804A Missense_Mutation p.P1077H 0.09 deleterious(0) probably_damaging(0.996) TCGA-55-8507-01 2 186670169 186670169 G T FSIP2 Missense_Mutation p.G5468V 0.09 benign(0.369) TCGA-55-8507-01 2 187529295 187529295 G T ITGAV Missense_Mutation p.G667V 0.17 deleterious(0) probably_damaging(1) TCGA-55-8507-01 2 196753073 196753073 G A DNAH7 Missense_Mutation p.A1772V 0.27 tolerated(0.15) benign(0.011) TCGA-55-8507-01 2 196825260 196825260 G A DNAH7 Missense_Mutation p.T872I 0.10 deleterious(0.01) probably_damaging(0.952) TCGA-55-8507-01 2 202337731 202337731 G A STRADB Missense_Mutation p.G83R 0.19 deleterious(0) probably_damaging(0.997) TCGA-55-8507-01 2 204103718 204103718 T C CYP20A1 5'UTR 0.28 TCGA-55-8507-01 2 208994275 208994275 G T CRYGC Missense_Mutation p.R48S 0.10 deleterious(0.01) possibly_damaging(0.828) TCGA-55-8507-01 2 210559998 210559998 A T MAP2 Missense_Mutation p.E1035V 0.19 deleterious_low_confidence(0) possibly_damaging(0.493) TCGA-55-8507-01 2 211179714 211179714 G T MYL1 Missense_Mutation p.P18Q 0.51 deleterious_low_confidence(0.01) unknown(0) TCGA-55-8507-01 2 211527875 211527875 G T CPS1 Missense_Mutation p.R1325M 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-55-8507-01 2 21263813 21263813 G T APOB Missense_Mutation p.S127Y 0.35 possibly_damaging(0.837) TCGA-55-8507-01 2 216197152 216197152 G A ATIC Missense_Mutation p.A246T 0.47 deleterious(0) possibly_damaging(0.633) TCGA-55-8507-01 2 218925677 218925677 G T CXCR2P1 RNA 0.12 TCGA-55-8507-01 2 219855038 219855038 T A CRYBA2 Missense_Mutation p.Y177F 0.13 tolerated(0.45) probably_damaging(0.999) TCGA-55-8507-01 2 219920445 219920445 G T IHH Missense_Mutation p.F240L 0.16 tolerated(0.07) benign(0.138) TCGA-55-8507-01 2 220399994 220399994 G T ASIC4 Missense_Mutation p.G501C 0.21 deleterious(0) probably_damaging(0.986) TCGA-55-8507-01 2 220404347 220404347 C G CHPF Missense_Mutation p.E696Q 0.18 tolerated(0.86) benign(0.01) TCGA-55-8507-01 2 225729619 225729619 C T DOCK10 Silent p.K481K 0.10 TCGA-55-8507-01 2 227968697 227968697 T A COL4A4 Missense_Mutation p.K269N 0.19 probably_damaging(0.941) TCGA-55-8507-01 2 230223351 230223351 G A DNER Missense_Mutation p.R707W 0.28 deleterious(0) probably_damaging(0.995) TCGA-55-8507-01 2 233194685 233194685 C T DIS3L2 Silent p.F634F 0.16 TCGA-55-8507-01 2 234669600 234669600 T C UGT1A8 Intron 0.25 TCGA-55-8507-01 2 238280540 238280540 C T COL6A3 Missense_Mutation p.D1374N 0.53 possibly_damaging(0.629) TCGA-55-8507-01 2 238280652 238280652 G T COL6A3 Silent p.V1336V 0.15 TCGA-55-8507-01 2 238737969 238737969 C T RBM44 Missense_Mutation p.L905F 0.30 deleterious(0) benign(0.167) TCGA-55-8507-01 2 239038812 239038812 G T ESPNL Missense_Mutation p.R486M 0.12 deleterious(0) possibly_damaging(0.627) TCGA-55-8507-01 2 239257490 239257490 G T TRAF3IP1 Splice_Site p.X456_splice 0.46 TCGA-55-8507-01 2 241817438 241817438 G T AGXT Splice_Site p.X315_splice 0.45 TCGA-55-8507-01 2 242144350 242144350 G C ANO7 Silent p.L374L 0.14 TCGA-55-8507-01 2 242144351 242144351 G T ANO7 Missense_Mutation p.V375L 0.14 tolerated(0.3) benign(0.029) TCGA-55-8507-01 2 26697412 26697412 C T OTOF Missense_Mutation p.G1086E 0.56 deleterious(0) probably_damaging(0.961) TCGA-55-8507-01 2 27746323 27746323 G - GCKR 3'UTR 0.46 TCGA-55-8507-01 2 28752593 28752593 A T PLB1 Splice_Site p.X139_splice 0.68 TCGA-55-8507-01 2 29375678 29375678 G T CLIP4 Silent p.T383T 0.77 TCGA-55-8507-01 2 32678999 32678999 G C BIRC6 Missense_Mutation p.R1581T 0.64 probably_damaging(0.977) TCGA-55-8507-01 2 60679780 60679780 C T BCL11A 3'Flank 0.69 TCGA-55-8507-01 2 66665007 66665007 C A MEIS1 Missense_Mutation p.P51T 0.61 tolerated(0.16) benign(0.003) TCGA-55-8507-01 2 70931505 70931505 G T ADD2 Silent p.I90I 0.27 TCGA-55-8507-01 2 71209230 71209230 G A ANKRD53 Missense_Mutation p.R261Q 0.31 deleterious(0) probably_damaging(0.972) TCGA-55-8507-01 2 79350407 79350407 G T REG1A 3'UTR 0.46 TCGA-55-8507-01 2 80529947 80529947 T A LRRTM1 Missense_Mutation p.Q333L 0.30 deleterious(0.01) benign(0.015) TCGA-55-8507-01 2 86831035 86831035 C G RNF103 Silent p.R663R 0.58 TCGA-55-8507-01 2 87012981 87012981 G A CD8A 3'UTR 0.56 TCGA-55-8507-01 2 89247110 89247110 G A IGKV1-5 Silent p.A20A 0.24 TCGA-55-8507-01 2 90044415 90044415 C G IGKV2D-24 Nonsense_Mutation p.Y112* 0.29 TCGA-55-8507-01 2 90199191 90199191 C T IGKV1D-12 3'Flank 0.58 TCGA-55-8507-01 2 90212041 90212041 G A IGKV3D-11 Missense_Mutation p.A45T 0.30 deleterious(0.05) benign(0.048) TCGA-55-8507-01 2 95484621 95484621 C A ANKRD20A8P RNA 0.17 TCGA-55-8507-01 2 96040611 96040611 C G KCNIP3 Missense_Mutation p.L108V 0.13 tolerated(1) benign(0.007) TCGA-55-8507-01 2 98887245 98887245 A C VWA3B Missense_Mutation p.M982L 0.11 tolerated(1) benign(0.001) TCGA-55-8507-01 2 99858820 99858820 G T LYG2 3'UTR 0.27 TCGA-55-8507-01 2 99936242 99936242 G A TXNDC9 Missense_Mutation p.P195L 0.32 deleterious(0.01) benign(0.228) TCGA-55-8507-01 3 108672410 108672410 T C GUCA1C Missense_Mutation p.N67S 0.14 deleterious(0.01) benign(0.039) TCGA-55-8507-01 3 108719443 108719443 C T MORC1 Silent p.L716L 0.38 TCGA-55-8507-01 3 111732274 111732274 G A TAGLN3 Missense_Mutation p.R159Q 0.41 tolerated(0.11) benign(0.01) TCGA-55-8507-01 3 113119439 113119439 A T WDR52 Missense_Mutation p.V476E 0.39 deleterious(0) benign(0.101) TCGA-55-8507-01 3 113890669 113890669 C A DRD3 Missense_Mutation p.E57D 0.17 deleterious(0.03) probably_damaging(0.986) TCGA-55-8507-01 3 118865570 118865570 C A C3orf30 Silent p.T178T 0.14 TCGA-55-8507-01 3 119133640 119133640 T C ARHGAP31 Missense_Mutation p.L955P 0.24 deleterious(0) probably_damaging(0.999) TCGA-55-8507-01 3 119205687 119205687 C A POGLUT1 Missense_Mutation p.P216T 0.06 tolerated(0.2) benign(0.026) TCGA-55-8507-01 3 119462953 119462953 G T MAATS1 Missense_Mutation p.E604D 0.41 tolerated(0.06) probably_damaging(0.919) TCGA-55-8507-01 3 120500100 120500100 G TT GTF2E1 Frame_Shift_Ins p.R368Lfs*9 0.32 TCGA-55-8507-01 3 124053294 124053294 G C KALRN Silent p.R531R 0.41 TCGA-55-8507-01 3 124378224 124378224 G T KALRN Nonsense_Mutation p.E137* 0.23 TCGA-55-8507-01 3 124839504 124839504 C G SLC12A8 Missense_Mutation p.G255R 0.27 deleterious(0.01) probably_damaging(0.99) TCGA-55-8507-01 3 12962030 12962030 G A IQSEC1 Silent p.I654I 0.27 TCGA-55-8507-01 3 134255997 134255997 G T CEP63 Nonsense_Mutation p.E148* 0.12 TCGA-55-8507-01 3 13663411 13663411 C G FBLN2 Missense_Mutation p.C764W 0.16 deleterious(0) probably_damaging(1) TCGA-55-8507-01 3 141161519 141161519 G C ZBTB38 Missense_Mutation p.V97L 0.13 deleterious(0.03) possibly_damaging(0.883) TCGA-55-8507-01 3 142681845 142681845 C A PAQR9 Missense_Mutation p.V112L 0.17 tolerated(1) benign(0.001) TCGA-55-8507-01 3 143708734 143708734 C G C3orf58 3'UTR 0.21 TCGA-55-8507-01 3 150264429 150264429 G T SERP1 5'UTR 0.43 TCGA-55-8507-01 3 151083769 151083769 G T MED12L Missense_Mutation p.C1071F 0.40 deleterious(0.02) possibly_damaging(0.803) TCGA-55-8507-01 3 158315869 158315869 G T MLF1 Missense_Mutation p.G125C 0.30 deleterious(0.01) probably_damaging(0.976) TCGA-55-8507-01 3 164737395 164737395 G T SI Missense_Mutation p.P1140T 0.16 deleterious(0) possibly_damaging(0.815) TCGA-55-8507-01 3 164758806 164758806 G T SI Missense_Mutation p.T694N 0.20 deleterious(0.02) benign(0.427) TCGA-55-8507-01 3 164764724 164764724 C G SI Missense_Mutation p.A598P 0.18 deleterious(0) possibly_damaging(0.844) TCGA-55-8507-01 3 164907601 164907601 G C SLITRK3 Missense_Mutation p.R340G 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-55-8507-01 3 165547393 165547393 G T BCHE Missense_Mutation p.P477T 0.49 deleterious(0) probably_damaging(0.999) TCGA-55-8507-01 3 167051679 167051679 G A ZBBX Missense_Mutation p.T208I 0.12 tolerated(0.08) benign(0.003) TCGA-55-8507-01 3 170843934 170843934 G A TNIK Missense_Mutation p.H594Y 0.65 tolerated(0.08) possibly_damaging(0.643) TCGA-55-8507-01 3 17202706 17202706 C T TBC1D5 Missense_Mutation p.D735N 0.19 deleterious_low_confidence(0.02) benign(0.055) TCGA-55-8507-01 3 179051382 179051382 G T ZNF639 Missense_Mutation p.E210D 0.35 tolerated(0.69) benign(0.006) TCGA-55-8507-01 3 180703720 180703720 C T DNAJC19 Missense_Mutation p.D92N 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-55-8507-01 3 180704756 180704756 C T DNAJC19 Missense_Mutation p.E62K 0.24 deleterious(0.03) benign(0.03) TCGA-55-8507-01 3 183368276 183368276 A T KLHL24 Silent p.S44S 0.25 TCGA-55-8507-01 3 25775366 25775366 C - NGLY1 Frame_Shift_Del p.K419Nfs*19 0.30 TCGA-55-8507-01 3 27243976 27243976 C G NEK10 Missense_Mutation p.Q721H 0.10 deleterious(0) possibly_damaging(0.519) TCGA-55-8507-01 3 27760382 27760382 C A EOMES Missense_Mutation p.M387I 0.36 deleterious(0.01) probably_damaging(0.989) TCGA-55-8507-01 3 31725510 31725510 C A OSBPL10 Missense_Mutation p.G448W 0.36 deleterious(0) probably_damaging(1) TCGA-55-8507-01 3 33055684 33055686 CCA AGC GLB1 Missense_Mutation p.SG532RL 0.11 TCGA-55-8507-01 3 33617708 33617708 C A CLASP2 Missense_Mutation p.V804F 0.18 deleterious(0) probably_damaging(0.998) TCGA-55-8507-01 3 36756822 36756822 T C DCLK3 Silent p.S648S 0.28 TCGA-55-8507-01 3 36756825 36756825 T C DCLK3 Silent p.V647V 0.26 TCGA-55-8507-01 3 37365451 37365451 G T GOLGA4 Nonsense_Mutation p.E714* 0.39 TCGA-55-8507-01 3 46539599 46539599 T C RTP3 Missense_Mutation p.M16T 0.36 deleterious(0) possibly_damaging(0.552) TCGA-55-8507-01 3 46727831 46727831 C T ALS2CL Silent p.Q211Q 0.34 TCGA-55-8507-01 3 46728572 46728572 C A ALS2CL Silent p.S145S 0.28 TCGA-55-8507-01 3 46963473 46963473 C A CCDC12 3'UTR 0.19 TCGA-55-8507-01 3 4774905 4774905 G T ITPR1 Splice_Site p.X1770_splice 0.20 TCGA-55-8507-01 3 49848452 49848452 C A UBA7 Missense_Mutation p.G399W 0.15 deleterious(0.01) probably_damaging(0.98) TCGA-55-8507-01 3 49848453 49848453 A T UBA7 Missense_Mutation p.D398E 0.16 tolerated(0.3) benign(0.008) TCGA-55-8507-01 3 52256013 52256013 G A TLR9 Silent p.F927F 0.35 TCGA-55-8507-01 3 52815976 52815976 C A ITIH1 Silent p.P236P 0.26 TCGA-55-8507-01 3 58487206 58487206 A T KCTD6 Missense_Mutation p.E187D 0.11 tolerated(0.21) benign(0.019) TCGA-55-8507-01 3 78708958 78708958 C G ROBO1 Splice_Site p.X774_splice 0.25 TCGA-55-8507-01 3 79174665 79174665 T G ROBO1 Missense_Mutation p.N38T 0.18 tolerated_low_confidence(0.63) benign(0.001) TCGA-55-8507-01 3 85932530 85932530 C T CADM2 Nonsense_Mutation p.Q103* 0.12 TCGA-55-8507-01 3 89156961 89156961 A T EPHA3 Missense_Mutation p.E21D 0.19 tolerated(0.61) benign(0.002) TCGA-55-8507-01 3 89390203 89390203 C A EPHA3 Missense_Mutation p.P318T 0.26 deleterious(0.03) benign(0.058) TCGA-55-8507-01 3 95374264 95374264 A T MTHFD2P1 RNA 0.30 TCGA-55-8507-01 3 96963164 96963164 C A EPHA6 Intron 0.22 TCGA-55-8507-01 3 9714417 9714417 C A MTMR14 Missense_Mutation p.F242L 0.28 deleterious(0) probably_damaging(0.914) TCGA-55-8507-01 3 97868863 97868863 G C OR5H14 Missense_Mutation p.G212R 0.26 deleterious(0.04) benign(0.251) TCGA-55-8507-01 3 98072777 98072777 T C OR5K4 Missense_Mutation p.L27P 0.21 deleterious(0) probably_damaging(0.977) TCGA-55-8507-01 3 98073437 98073437 C T OR5K4 Missense_Mutation p.S247F 0.22 deleterious(0) probably_damaging(0.981) TCGA-55-8507-01 3 98189000 98189000 A G OR5K1 Missense_Mutation p.I194V 0.33 tolerated(0.25) benign(0.005) TCGA-55-8507-01 3 98251066 98251066 C A GPR15 Silent p.G63G 0.21 TCGA-55-8507-01 4 101108765 101108765 T A DDIT4L 3'UTR 0.30 TCGA-55-8507-01 4 102791747 102791747 A T BANK1 Silent p.A283A 0.41 TCGA-55-8507-01 4 10542187 10542187 G - CLNK Frame_Shift_Del p.P178Lfs*26 0.22 TCGA-55-8507-01 4 109895530 109895530 C G COL25A1 Missense_Mutation p.G162A 0.34 deleterious(0.02) unknown(0) TCGA-55-8507-01 4 110612012 110612012 C T CASP6 Missense_Mutation p.A213T 0.44 tolerated(0.05) possibly_damaging(0.702) TCGA-55-8507-01 4 110635603 110635603 C A PLA2G12A Missense_Mutation p.G167V 0.23 deleterious(0) probably_damaging(1) TCGA-55-8507-01 4 120446786 120446786 A T PDE5A Missense_Mutation p.L566Q 0.31 deleterious(0) probably_damaging(0.925) TCGA-55-8507-01 4 126367607 126367607 T G FAT4 Missense_Mutation p.S2451R 0.27 possibly_damaging(0.836) TCGA-55-8507-01 4 13545696 13545696 C G NKX3-2 Missense_Mutation p.G115R 0.41 tolerated_low_confidence(0.32) benign(0.019) TCGA-55-8507-01 4 1369156 1369156 G - UVSSA Frame_Shift_Del p.E432Rfs*152 0.31 TCGA-55-8507-01 4 151504534 151504534 C T MAB21L2 Missense_Mutation p.T118M 0.30 deleterious(0) probably_damaging(1) TCGA-55-8507-01 4 151511866 151511866 G A LRBA Silent p.A2075A 0.43 TCGA-55-8507-01 4 155156654 155156654 T A DCHS2 Missense_Mutation p.K2595N 0.26 deleterious(0.03) benign(0.164) TCGA-55-8507-01 4 155506767 155506767 T G FGA Missense_Mutation p.D605A 0.32 deleterious(0.03) possibly_damaging(0.658) TCGA-55-8507-01 4 155507213 155507213 G T FGA Silent p.T456T 0.30 TCGA-55-8507-01 4 155509953 155509953 G T FGA Nonsense_Mutation p.S119* 0.30 TCGA-55-8507-01 4 156135600 156135600 G T NPY2R Missense_Mutation p.G170V 0.30 tolerated(0.67) benign(0.012) TCGA-55-8507-01 4 156696208 156696208 A T GUCY1B3 Missense_Mutation p.S56C 0.23 tolerated(0.19) benign(0.022) TCGA-55-8507-01 4 156824887 156824887 C A TDO2 5'UTR 0.17 TCGA-55-8507-01 4 164272200 164272200 C A NPY5R Missense_Mutation p.L259I 0.31 tolerated(0.12) benign(0.098) TCGA-55-8507-01 4 164394404 164394404 T A TKTL2 Missense_Mutation p.E161D 0.24 deleterious(0.02) probably_damaging(0.917) TCGA-55-8507-01 4 16504354 16504354 G A LDB2 Missense_Mutation p.A345V 0.25 tolerated(0.05) benign(0.048) TCGA-55-8507-01 4 16513681 16513681 T A LDB2 Missense_Mutation p.K221I 0.36 deleterious(0) probably_damaging(0.991) TCGA-55-8507-01 4 166981179 166981179 G T TLL1 Splice_Site p.X616_splice 0.37 TCGA-55-8507-01 4 183696210 183696210 G A TENM3 Missense_Mutation p.M1736I 0.26 tolerated(1) benign(0.107) TCGA-55-8507-01 4 187455239 187455239 C G MTNR1A Missense_Mutation p.Q219H 0.05 tolerated(0.28) benign(0.002) TCGA-55-8507-01 4 189012702 189012702 T A TRIML2 Missense_Mutation p.Q330L 0.34 deleterious(0.04) probably_damaging(0.971) TCGA-55-8507-01 4 20555485 20555485 G A SLIT2 Nonsense_Mutation p.W873* 0.30 TCGA-55-8507-01 4 2065787 2065787 C G NAT8L Missense_Mutation p.S281W 0.24 deleterious(0) probably_damaging(0.979) TCGA-55-8507-01 4 3526684 3526684 C A LRPAP1 Missense_Mutation p.G100V 0.11 deleterious(0) probably_damaging(0.999) TCGA-55-8507-01 4 3769577 3769577 C T ADRA2C Missense_Mutation p.P415L 0.19 deleterious(0) probably_damaging(0.993) TCGA-55-8507-01 4 37841687 37841687 G T PGM2 Splice_Site p.X176_splice 0.27 TCGA-55-8507-01 4 4190596 4190596 C A OTOP1 Missense_Mutation p.M591I 0.07 tolerated(0.37) benign(0.086) TCGA-55-8507-01 4 42119639 42119639 C G BEND4 Missense_Mutation p.G501R 0.19 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-55-8507-01 4 44699458 44699458 A C GUF1 Missense_Mutation p.K623N 0.29 deleterious(0) probably_damaging(1) TCGA-55-8507-01 4 46099322 46099322 T A GABRG1 Missense_Mutation p.N50I 0.32 deleterious(0) probably_damaging(0.994) TCGA-55-8507-01 4 46307711 46307711 C T GABRA2 Missense_Mutation p.E193K 0.14 deleterious(0) probably_damaging(0.954) TCGA-55-8507-01 4 46930627 46930627 G A GABRA4 Missense_Mutation p.S427F 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.629) TCGA-55-8507-01 4 47583986 47583986 G T ATP10D Missense_Mutation p.G1220C 0.24 deleterious(0.01) probably_damaging(0.992) TCGA-55-8507-01 4 52740551 52740551 G T DCUN1D4 Missense_Mutation p.S84I 0.33 deleterious(0.01) benign(0.221) TCGA-55-8507-01 4 53271 53271 G A ZNF595 5'UTR 0.11 TCGA-55-8507-01 4 6304141 6304141 C T WFS1 Silent p.G873G 0.30 TCGA-55-8507-01 4 69535777 69535777 C A UGT2B15 Missense_Mutation p.G187V 0.31 deleterious(0.01) possibly_damaging(0.772) TCGA-55-8507-01 4 69964359 69964359 G T UGT2B7 Missense_Mutation p.D275Y 0.32 deleterious(0.03) possibly_damaging(0.459) TCGA-55-8507-01 4 70465027 70465027 T C UGT2A1 Silent p.P477P 0.20 TCGA-55-8507-01 4 70707725 70707725 C G SULT1E1 Missense_Mutation p.R291P 0.26 deleterious(0.03) benign(0.005) TCGA-55-8507-01 4 71027322 71027322 T C C4orf40 3'UTR 0.35 TCGA-55-8507-01 4 71255429 71255429 T A SMR3B Missense_Mutation p.L35Q 0.27 tolerated_low_confidence(0.08) unknown(0) TCGA-55-8507-01 4 74283897 74283897 C G ALB Missense_Mutation p.N507K 0.29 tolerated(0.29) benign(0.345) TCGA-55-8507-01 4 74864245 74864245 C T CXCL5 Silent p.L18L 0.47 TCGA-55-8507-01 4 76793183 76793183 C A PPEF2 Missense_Mutation p.R548S 0.33 deleterious(0.03) benign(0.293) TCGA-55-8507-01 4 83552496 83552496 C G SCD5 Missense_Mutation p.G326A 0.33 deleterious(0) probably_damaging(0.986) TCGA-55-8507-01 4 88901546 88901546 A C SPP1 Missense_Mutation p.N59T 0.41 tolerated(0.2) possibly_damaging(0.728) TCGA-55-8507-01 4 89042865 89042865 G A ABCG2 Missense_Mutation p.P204L 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-55-8507-01 4 96091434 96091434 G T UNC5C Missense_Mutation p.T834N 0.23 tolerated(0.05) benign(0.445) TCGA-55-8507-01 4 96761887 96761887 G T PDHA2 Missense_Mutation p.A196S 0.29 deleterious(0) probably_damaging(0.959) TCGA-55-8507-01 4 96761996 96761996 A T PDHA2 Missense_Mutation p.E232V 0.23 deleterious(0.03) benign(0.017) TCGA-55-8507-01 5 118865602 118865602 G T HSD17B4 Missense_Mutation p.G619V 0.14 deleterious(0) probably_damaging(0.984) TCGA-55-8507-01 5 127666322 127666322 C A FBN2 Missense_Mutation p.G1430C 0.13 deleterious(0) probably_damaging(1) TCGA-55-8507-01 5 127713551 127713551 C A FBN2 Missense_Mutation p.Q581H 0.32 tolerated(0.17) benign(0.036) TCGA-55-8507-01 5 134102700 134102700 G T DDX46 Silent p.R100R 0.24 TCGA-55-8507-01 5 135188390 135188390 C A SLC25A48 Missense_Mutation p.R101S 0.16 tolerated(0.99) benign(0.198) TCGA-55-8507-01 5 13692172 13692172 G C DNAH5 Missense_Mutation p.A4599G 0.40 possibly_damaging(0.694) TCGA-55-8507-01 5 13769624 13769624 C G DNAH5 Missense_Mutation p.D3236H 0.52 benign(0.005) TCGA-55-8507-01 5 137753188 137753188 A T KDM3B Silent p.G1108G 0.09 TCGA-55-8507-01 5 13883076 13883076 G C DNAH5 Silent p.A1037A 0.22 TCGA-55-8507-01 5 13922401 13922401 C G DNAH5 Missense_Mutation p.G159R 0.44 probably_damaging(0.953) TCGA-55-8507-01 5 139917842 139917842 C G ANKHD1 Missense_Mutation p.S2467C 0.39 probably_damaging(0.947) TCGA-55-8507-01 5 140189025 140189025 G T PCDHA4 Silent p.S751S 0.12 TCGA-55-8507-01 5 140221674 140221674 C G PCDHA8 Missense_Mutation p.D256E 0.25 tolerated_low_confidence(0.24) benign(0.002) TCGA-55-8507-01 5 140503614 140503614 C A PCDHB4 Silent p.A678A 0.20 TCGA-55-8507-01 5 140516198 140516198 C A PCDHB5 Silent p.P394P 0.25 TCGA-55-8507-01 5 140553205 140553205 C T PCDHB7 Silent p.S263S 0.36 TCGA-55-8507-01 5 140595123 140595123 A G PCDHB13 Silent p.T476T 0.30 TCGA-55-8507-01 5 140719480 140719480 C G PCDHGA2 Missense_Mutation p.F314L 0.12 tolerated_low_confidence(0.11) benign(0.155) TCGA-55-8507-01 5 140720761 140720761 G T PCDHGA2 Silent p.V741V 0.14 TCGA-55-8507-01 5 140740526 140740526 C A PCDHGB2 Missense_Mutation p.A275E 0.38 deleterious(0.01) possibly_damaging(0.841) TCGA-55-8507-01 5 140751984 140751984 C A PCDHGB3 Missense_Mutation p.L675I 0.21 tolerated(0.14) possibly_damaging(0.887) TCGA-55-8507-01 5 140755564 140755564 C A PCDHGA6 Silent p.L638L 0.38 TCGA-55-8507-01 5 143352 143352 C G PLEKHG4B Silent p.S200S 0.18 TCGA-55-8507-01 5 145379836 145379836 C T SH3RF2 Silent p.F198F 0.13 TCGA-55-8507-01 5 149278032 149278032 G T PDE6A Missense_Mutation p.P434H 0.25 deleterious(0) benign(0.241) TCGA-55-8507-01 5 150701472 150701472 C T SLC36A2 Intron 0.50 TCGA-55-8507-01 5 156923986 156923986 T C ADAM19 Missense_Mutation p.T504A 0.43 tolerated(0.25) benign(0.365) TCGA-55-8507-01 5 158140129 158140129 G T EBF1 Missense_Mutation p.D406E 0.18 deleterious_low_confidence(0.02) benign(0.324) TCGA-55-8507-01 5 15937077 15937077 C A FBXL7 Missense_Mutation p.L420M 0.25 deleterious(0.02) benign(0.291) TCGA-55-8507-01 5 159492030 159492030 G A TTC1 Silent p.S279S 0.35 TCGA-55-8507-01 5 176831885 176831885 C A F12 Missense_Mutation p.G187V 0.40 deleterious(0) probably_damaging(1) TCGA-55-8507-01 5 180374745 180374745 G T BTNL8 Intron 0.49 TCGA-55-8507-01 5 180377117 180377117 G T BTNL8 Missense_Mutation p.R359L 0.38 tolerated(0.3) benign(0.05) TCGA-55-8507-01 5 19721518 19721518 C A CDH18 Missense_Mutation p.S194I 0.32 deleterious(0) probably_damaging(0.998) TCGA-55-8507-01 5 23522451 23522451 C A PRDM9 Missense_Mutation p.L183M 0.49 deleterious(0) possibly_damaging(0.893) TCGA-55-8507-01 5 31526375 31526375 G A DROSHA Missense_Mutation p.P222L 0.07 deleterious_low_confidence(0.01) benign(0.137) TCGA-55-8507-01 5 35871293 35871293 A C IL7R Missense_Mutation p.E172A 0.41 deleterious(0.04) benign(0.038) TCGA-55-8507-01 5 35955672 35955672 A C UGT3A1 Intron 0.18 TCGA-55-8507-01 5 38352394 38352394 G C EGFLAM Missense_Mutation p.G169A 0.60 deleterious_low_confidence(0.01) probably_damaging(0.936) TCGA-55-8507-01 5 39383358 39383358 G T DAB2 Missense_Mutation p.L235M 0.14 deleterious(0) probably_damaging(0.999) TCGA-55-8507-01 5 39383359 39383359 G T DAB2 Silent p.I234I 0.14 TCGA-55-8507-01 5 43677830 43677830 A G NNT Missense_Mutation p.Y933C 0.25 deleterious(0) probably_damaging(0.96) TCGA-55-8507-01 5 52361752 52361752 G T ITGA2 Missense_Mutation p.G630W 0.26 deleterious(0) probably_damaging(0.946) TCGA-55-8507-01 5 52361753 52361753 G T ITGA2 Missense_Mutation p.G630V 0.28 deleterious(0) possibly_damaging(0.687) TCGA-55-8507-01 5 54416315 54416315 G T CDC20B Missense_Mutation p.R427S 0.26 tolerated(0.4) benign(0.008) TCGA-55-8507-01 5 61733224 61733224 G T IPO11 Missense_Mutation p.G80C 0.31 deleterious(0) probably_damaging(1) TCGA-55-8507-01 5 64748737 64748737 T C ADAMTS6 Missense_Mutation p.R214G 0.44 tolerated(0.16) benign(0) TCGA-55-8507-01 5 75913974 75913974 G T F2RL2 Nonsense_Mutation p.C186* 0.17 TCGA-55-8507-01 5 75914184 75914184 C T F2RL2 Silent p.L116L 0.20 TCGA-55-8507-01 5 79617267 79617267 T C SPZ1 Silent p.N411N 0.35 TCGA-55-8507-01 5 82833645 82833645 G T VCAN Missense_Mutation p.W1608L 0.33 tolerated(0.64) benign(0.001) TCGA-55-8507-01 5 82937540 82937540 G T HAPLN1 Silent p.L280L 0.32 TCGA-55-8507-01 5 83525687 83525687 T A EDIL3 Missense_Mutation p.E71V 0.30 tolerated_low_confidence(0.05) benign(0.021) TCGA-55-8507-01 5 86708648 86708648 G A CCNH 5'UTR 0.19 TCGA-55-8507-01 5 92923753 92923753 C T NR2F1 Silent p.Y198Y 0.21 TCGA-55-8507-01 6 100395734 100395734 C A MCHR2 Missense_Mutation p.W99L 0.22 deleterious(0) probably_damaging(0.923) TCGA-55-8507-01 6 107365484 107365484 A G C6orf203 Missense_Mutation p.Y169C 0.52 deleterious(0) probably_damaging(0.986) TCGA-55-8507-01 6 109802713 109802713 C A ZBTB24 Nonsense_Mutation p.E173* 0.11 TCGA-55-8507-01 6 121655574 121655574 C A TBC1D32 Translation_Start_Site p.M1? 0.39 deleterious_low_confidence(0) possibly_damaging(0.452) TCGA-55-8507-01 6 133135705 133135705 G T RPS12 5'UTR 0.26 TCGA-55-8507-01 6 133846174 133846174 G T EYA4 Intron 0.27 TCGA-55-8507-01 6 136589430 136589430 G T BCLAF1 Missense_Mutation p.A756E 0.12 tolerated(0.08) possibly_damaging(0.765) TCGA-55-8507-01 6 143823664 143823664 C A FUCA2 Missense_Mutation p.G264V 0.43 deleterious(0) probably_damaging(0.996) TCGA-55-8507-01 6 146127354 146127354 C G FBXO30 Missense_Mutation p.S63T 0.11 tolerated(0.14) benign(0.278) TCGA-55-8507-01 6 152129170 152129170 G T ESR1 Missense_Mutation p.E41D 0.28 tolerated(0.62) benign(0.003) TCGA-55-8507-01 6 153073373 153073373 T C VIP Missense_Mutation p.S21P 0.32 deleterious(0.02) probably_damaging(0.994) TCGA-55-8507-01 6 153073374 153073374 C T VIP Missense_Mutation p.S21L 0.32 tolerated(0.07) probably_damaging(0.991) TCGA-55-8507-01 6 155451281 155451281 G T TIAM2 Silent p.L308L 0.39 TCGA-55-8507-01 6 158534625 158534625 C A SERAC1 Splice_Site p.X562_splice 0.29 TCGA-55-8507-01 6 159653792 159653792 G C FNDC1 Missense_Mutation p.A750P 0.36 deleterious_low_confidence(0.01) unknown(0) TCGA-55-8507-01 6 162683597 162683597 G A PARK2 Silent p.H124H 0.27 TCGA-55-8507-01 6 165809859 165809859 C - PDE10A Frame_Shift_Del p.W456Cfs*60 0.34 TCGA-55-8507-01 6 168226271 168226271 C A MLLT4 5'Flank 0.30 TCGA-55-8507-01 6 25966994 25966994 G C TRIM38 Missense_Mutation p.E82Q 0.56 tolerated(0.07) possibly_damaging(0.495) TCGA-55-8507-01 6 26104474 26104474 G T HIST1H4C Missense_Mutation p.G100V 0.14 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-55-8507-01 6 26234544 26234544 C T HIST1H1D Silent p.G206G 0.07 TCGA-55-8507-01 6 26431814 26431814 C T BTN2A3P RNA 0.30 TCGA-55-8507-01 6 26431815 26431815 C T BTN2A3P RNA 0.28 TCGA-55-8507-01 6 26545675 26545675 C T HMGN4 Nonsense_Mutation p.Q81* 0.15 TCGA-55-8507-01 6 29797612 29797612 C A HLA-G Silent p.T305T 0.11 TCGA-55-8507-01 6 30114911 30114911 G T TRIM40 Missense_Mutation p.R168S 0.15 tolerated(0.07) benign(0.039) TCGA-55-8507-01 6 31745344 31745344 G C VARS 3'UTR 0.20 TCGA-55-8507-01 6 31927793 31927793 C T SKIV2L Missense_Mutation p.H45Y 0.13 tolerated(1) benign(0.153) TCGA-55-8507-01 6 40400605 40400605 A G LRFN2 Missense_Mutation p.L83P 0.38 deleterious(0) probably_damaging(1) TCGA-55-8507-01 6 41303884 41303884 G T NCR2 Missense_Mutation p.V38L 0.16 tolerated(0.31) possibly_damaging(0.466) TCGA-55-8507-01 6 43273468 43273468 G T CRIP3 3'UTR 0.19 TCGA-55-8507-01 6 44268148 44268148 C A AARS2 3'UTR 0.58 TCGA-55-8507-01 6 46658729 46658729 G A TDRD6 Missense_Mutation p.R955K 0.21 tolerated(0.34) benign(0.009) TCGA-55-8507-01 6 49419394 49419394 C A MUT Nonsense_Mutation p.E373* 0.56 TCGA-55-8507-01 6 54254862 54254862 C T TINAG 3'UTR 0.28 TCGA-55-8507-01 6 55300461 55300461 C A HMGCLL1 Nonstop_Mutation p.*371Lext*20 0.13 TCGA-55-8507-01 6 55300531 55300531 C A HMGCLL1 Missense_Mutation p.G348C 0.58 deleterious(0) probably_damaging(1) TCGA-55-8507-01 6 56328459 56328459 T C DST Silent p.P4974P 0.21 TCGA-55-8507-01 6 56347514 56347514 T G DST Silent p.S4500S 0.10 TCGA-55-8507-01 6 56420452 56420452 C G DST Missense_Mutation p.D2320H 0.27 possibly_damaging(0.824) TCGA-55-8507-01 6 56474119 56474119 G T DST Intron 0.08 TCGA-55-8507-01 6 56480271 56480271 A T DST Intron 0.15 TCGA-55-8507-01 6 56499365 56499365 C A DST Missense_Mutation p.R593L 0.16 probably_damaging(0.999) TCGA-55-8507-01 6 56507426 56507426 C G DST Missense_Mutation p.G54A 0.66 benign(0.075) TCGA-55-8507-01 6 6152141 6152141 T A F13A1 Silent p.T650T 0.49 TCGA-55-8507-01 6 62390883 62390883 G T KHDRBS2 Silent p.P345P 0.48 TCGA-55-8507-01 6 62407118 62407118 C - KHDRBS2 Frame_Shift_Del p.D312Mfs*18 0.40 TCGA-55-8507-01 6 70926549 70926549 G T COL9A1 3'UTR 0.20 TCGA-55-8507-01 6 71276631 71276631 G A C6orf57 5'UTR 0.27 TCGA-55-8507-01 6 7401232 7401232 G T RIOK1 Missense_Mutation p.L174F 0.50 deleterious(0.04) probably_damaging(0.988) TCGA-55-8507-01 6 75965950 75965950 C A TMEM30A Missense_Mutation p.M318I 0.27 tolerated(0.08) benign(0.074) TCGA-55-8507-01 6 76124531 76124531 C A FILIP1 Missense_Mutation p.G53V 0.36 deleterious(0.04) benign(0.221) TCGA-55-8507-01 6 76602280 76602280 G T MYO6 Nonsense_Mutation p.E994* 0.30 TCGA-55-8507-01 6 7727509 7727517 CCGGCAGCA - BMP6 In_Frame_Del p.R108_Q110del 0.32 TCGA-55-8507-01 6 87943066 87943066 G T ZNF292 Missense_Mutation p.G188C 0.12 deleterious(0) probably_damaging(1) TCGA-55-8507-01 6 87965134 87965134 G T ZNF292 Missense_Mutation p.S596I 0.33 tolerated(0.06) probably_damaging(0.969) TCGA-55-8507-01 6 89600245 89600245 A G RNGTT Missense_Mutation p.Y289H 0.37 deleterious(0) probably_damaging(0.997) TCGA-55-8507-01 6 89600247 89600247 G T RNGTT Missense_Mutation p.P288Q 0.37 deleterious(0.01) possibly_damaging(0.809) TCGA-55-8507-01 6 89790705 89790705 C T PNRC1 Missense_Mutation p.A31V 0.43 deleterious_low_confidence(0.03) benign(0.344) TCGA-55-8507-01 6 90605434 90605434 G C GJA10 Missense_Mutation p.S416T 0.12 tolerated(0.06) possibly_damaging(0.661) TCGA-55-8507-01 6 94120364 94120364 C A EPHA7 Missense_Mutation p.E229D 0.12 tolerated(0.05) probably_damaging(0.985) TCGA-55-8507-01 6 97246248 97246248 C A GPR63 3'UTR 0.62 TCGA-55-8507-01 7 100334225 100334225 G A ZAN Missense_Mutation p.G76R 0.34 probably_damaging(0.977) TCGA-55-8507-01 7 100334226 100334226 G T ZAN Missense_Mutation p.G76V 0.35 probably_damaging(0.976) TCGA-55-8507-01 7 100334227 100334227 G T ZAN Silent p.G76G 0.36 TCGA-55-8507-01 7 100552312 100552312 C T MUC3A Missense_Mutation p.P355S 0.36 tolerated(0.08) possibly_damaging(0.748) TCGA-55-8507-01 7 100674890 100674890 G T MUC17 Missense_Mutation p.A65S 0.20 benign(0.003) TCGA-55-8507-01 7 100771750 100771750 C A SERPINE1 Missense_Mutation p.H26N 0.19 tolerated(0.43) benign(0.001) TCGA-55-8507-01 7 100843520 100843520 C T MOGAT3 Missense_Mutation p.V95I 0.46 tolerated(1) benign(0.01) TCGA-55-8507-01 7 103251195 103251195 G T RELN Silent p.A985A 0.20 TCGA-55-8507-01 7 103338412 103338412 G T RELN Missense_Mutation p.A344D 0.17 deleterious(0) benign(0.356) TCGA-55-8507-01 7 107114493 107114493 C A GPR22 5'UTR 0.54 TCGA-55-8507-01 7 107559657 107559657 A G DLD Missense_Mutation p.R495G 0.19 deleterious(0) probably_damaging(0.985) TCGA-55-8507-01 7 107703407 107703407 T A LAMB4 Missense_Mutation p.M1032L 0.42 tolerated(0.08) benign(0) TCGA-55-8507-01 7 113519690 113519690 C G PPP1R3A Missense_Mutation p.R486P 0.17 deleterious(0.05) benign(0.018) TCGA-55-8507-01 7 113558720 113558720 T A PPP1R3A Missense_Mutation p.D111V 0.26 deleterious(0.03) benign(0.005) TCGA-55-8507-01 7 114174741 114174741 G T FOXP2 Missense_Mutation p.D80Y 0.57 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-55-8507-01 7 117232612 117232612 C A CFTR Silent p.A797A 0.28 TCGA-55-8507-01 7 120372966 120372966 C A KCND2 Missense_Mutation p.D375E 0.41 deleterious(0.03) possibly_damaging(0.803) TCGA-55-8507-01 7 123269238 123269238 G T ASB15 Missense_Mutation p.R397M 0.17 deleterious(0.01) probably_damaging(0.962) TCGA-55-8507-01 7 124503512 124503512 C A POT1 Silent p.P146P 0.16 TCGA-55-8507-01 7 126173566 126173566 C G GRM8 Missense_Mutation p.V624L 0.52 tolerated(0.1) benign(0.048) TCGA-55-8507-01 7 128454719 128454719 G T CCDC136 Nonsense_Mutation p.E931* 0.18 TCGA-55-8507-01 7 131878899 131878899 A G PLXNA4 Silent p.H926H 0.23 TCGA-55-8507-01 7 135418831 135418831 G T FAM180A Silent p.A138A 0.34 TCGA-55-8507-01 7 136700362 136700362 C A CHRM2 Missense_Mutation p.S250R 0.22 tolerated(0.19) benign(0.014) TCGA-55-8507-01 7 138732211 138732211 G A ZC3HAV1 3'UTR 0.50 TCGA-55-8507-01 7 139657446 139657446 C A TBXAS1 Silent p.S281S 0.20 TCGA-55-8507-01 7 141758011 141758011 C A MGAM Silent p.G1234G 0.20 TCGA-55-8507-01 7 142021073 142021073 C G TRBV5-1 Missense_Mutation p.P18R 0.17 tolerated(0.37) possibly_damaging(0.482) TCGA-55-8507-01 7 142021277 142021277 G A TRBV5-1 Missense_Mutation p.R86H 0.32 tolerated(0.25) benign(0.003) TCGA-55-8507-01 7 142124559 142124559 G T TRBV6-8 Missense_Mutation p.L3I 0.15 tolerated(0.42) benign(0.001) TCGA-55-8507-01 7 142247521 142247521 C A TRBV7-3 Silent p.G15G 0.13 TCGA-55-8507-01 7 142460304 142460304 G T PRSS1 Missense_Mutation p.Q159H 0.18 tolerated(0.06) benign(0.292) TCGA-55-8507-01 7 142723473 142723473 G T OR9A2 Silent p.G249G 0.43 TCGA-55-8507-01 7 143175841 143175841 C G TAS2R41 Missense_Mutation p.S292R 0.26 tolerated(0.12) benign(0.009) TCGA-55-8507-01 7 143748140 143748140 G T OR2A5 Missense_Mutation p.V216F 0.50 deleterious(0.03) benign(0.049) TCGA-55-8507-01 7 143793059 143793059 C A OR2A12 Missense_Mutation p.L287I 0.06 tolerated(0.09) benign(0.125) TCGA-55-8507-01 7 143883987 143883987 T C ARHGEF35 3'UTR 0.15 TCGA-55-8507-01 7 14647080 14647080 G T DGKB Missense_Mutation p.S472Y 0.35 deleterious(0.02) possibly_damaging(0.516) TCGA-55-8507-01 7 146829416 146829416 G C CNTNAP2 Missense_Mutation p.G388A 0.19 tolerated(0.08) possibly_damaging(0.677) TCGA-55-8507-01 7 1482021 1482021 C T MICALL2 Silent p.R506R 0.28 TCGA-55-8507-01 7 148288109 148288109 G A C7orf33 Missense_Mutation p.G31E 0.19 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-55-8507-01 7 148525901 148525901 C T EZH2 Missense_Mutation p.D186N 0.24 tolerated(0.23) benign(0.013) TCGA-55-8507-01 7 150094601 150094601 C T ZNF775 Silent p.R344R 0.15 TCGA-55-8507-01 7 150720163 150720163 C A ATG9B Missense_Mutation p.A264S 0.22 deleterious(0.05) possibly_damaging(0.79) TCGA-55-8507-01 7 151082344 151082344 G T WDR86 Intron 0.29 TCGA-55-8507-01 7 151097185 151097185 C A WDR86 Splice_Site p.X102_splice 0.25 TCGA-55-8507-01 7 154379721 154379721 C T DPP6 Intron 0.13 TCGA-55-8507-01 7 15725719 15725719 C A MEOX2 Silent p.A103A 0.23 TCGA-55-8507-01 7 157396755 157396755 C A PTPRN2 Missense_Mutation p.R786L 0.13 deleterious(0) probably_damaging(1) TCGA-55-8507-01 7 157475596 157475596 C T PTPRN2 Missense_Mutation p.E608K 0.31 tolerated(0.05) benign(0.051) TCGA-55-8507-01 7 157475598 157475598 G T PTPRN2 Missense_Mutation p.A607E 0.32 tolerated(0.28) benign(0.011) TCGA-55-8507-01 7 27185178 27185178 C T HOXA6 3'UTR 0.31 TCGA-55-8507-01 7 27196289 27196289 C A HOXA7 5'UTR 0.40 TCGA-55-8507-01 7 29440433 29440433 G T CHN2 Missense_Mutation p.A189S 0.27 tolerated(0.94) benign(0.001) TCGA-55-8507-01 7 2987300 2987300 C A CARD11 Silent p.T43T 0.32 TCGA-55-8507-01 7 34192953 34192953 G T BMPER 3'UTR 0.19 TCGA-55-8507-01 7 36338894 36338894 G T EEPD1 3'UTR 0.35 TCGA-55-8507-01 7 38433689 38433689 C T AMPH Silent p.E508E 0.21 TCGA-55-8507-01 7 40498719 40498719 T A SUGCT Nonsense_Mutation p.L310* 0.41 TCGA-55-8507-01 7 43590134 43590134 C A HECW1 Silent p.R1447R 0.29 TCGA-55-8507-01 7 44152609 44152609 C T AEBP1 Silent p.Y863Y 0.30 TCGA-55-8507-01 7 48285188 48285188 G T ABCA13 Silent p.V490V 0.27 TCGA-55-8507-01 7 48349544 48349544 G A ABCA13 Missense_Mutation p.V3108I 0.19 benign(0.066) TCGA-55-8507-01 7 57510023 57510023 G T ZNF716 Missense_Mutation p.S10I 0.23 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-55-8507-01 7 64168196 64168211 TTAATCAATCCTATCA - ZNF107 Frame_Shift_Del p.F505Yfs*7 0.20 TCGA-55-8507-01 7 65706242 65706242 G T TPST1 Missense_Mutation p.G277V 0.26 deleterious(0) probably_damaging(0.968) TCGA-55-8507-01 7 73011252 73011252 C A MLXIPL Missense_Mutation p.E538D 0.21 tolerated(0.24) benign(0.432) TCGA-55-8507-01 7 73814761 73814761 C A CLIP2 Missense_Mutation p.P981H 0.24 tolerated(0.11) possibly_damaging(0.572) TCGA-55-8507-01 7 76619619 76619619 A T UPK3B Intron 0.11 TCGA-55-8507-01 7 87323266 87323266 C A RUNDC3B Missense_Mutation p.P94H 0.24 deleterious(0.02) probably_damaging(0.91) TCGA-55-8507-01 7 93540200 93540200 G A GNGT1 Silent p.K65K 0.27 TCGA-55-8507-01 7 94040417 94040417 C A COL1A2 Missense_Mutation p.P434H 0.27 probably_damaging(0.999) TCGA-55-8507-01 7 99997517 99997517 T A PILRA Missense_Mutation p.V300D 0.19 deleterious(0) probably_damaging(0.979) TCGA-55-8507-01 8 104709414 104709414 G T RIMS2 Missense_Mutation p.G93C 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-8507-01 8 104898050 104898050 G A RIMS2 Missense_Mutation p.R408Q 0.33 tolerated_low_confidence(0.05) probably_damaging(0.999) TCGA-55-8507-01 8 10555470 10555470 C A C8orf74 Missense_Mutation p.F201L 0.47 tolerated(0.26) benign(0.081) TCGA-55-8507-01 8 106813908 106813908 G T ZFPM2 Missense_Mutation p.S533I 0.42 deleterious(0.03) possibly_damaging(0.723) TCGA-55-8507-01 8 106815142 106815142 C A ZFPM2 Silent p.V944V 0.28 TCGA-55-8507-01 8 110424542 110424542 G T PKHD1L1 Missense_Mutation p.G712C 0.42 deleterious(0.01) probably_damaging(1) TCGA-55-8507-01 8 110530708 110530708 C T PKHD1L1 Missense_Mutation p.P4001L 0.26 deleterious(0) possibly_damaging(0.448) TCGA-55-8507-01 8 11189357 11189357 A C SLC35G5 Missense_Mutation p.S248R 0.11 tolerated(0.55) benign(0.002) TCGA-55-8507-01 8 113318340 113318342 TAG AA CSMD3 Frame_Shift_Del p.Y2656Ffs*55 0.14 TCGA-55-8507-01 8 113363471 113363471 A T CSMD3 Silent p.G2086G 0.20 TCGA-55-8507-01 8 113662468 113662468 C A CSMD3 Nonsense_Mutation p.G1039* 0.16 TCGA-55-8507-01 8 113702220 113702220 C A CSMD3 Missense_Mutation p.D678Y 0.39 deleterious(0.01) probably_damaging(0.986) TCGA-55-8507-01 8 114448944 114448944 C A CSMD3 Missense_Mutation p.W47L 0.23 tolerated_low_confidence(0.09) benign(0) TCGA-55-8507-01 8 120594737 120594737 C G ENPP2 Missense_Mutation p.R602T 0.23 tolerated(0.35) benign(0.209) TCGA-55-8507-01 8 124664205 124664205 C A KLHL38 Missense_Mutation p.R321L 0.33 deleterious(0) benign(0.071) TCGA-55-8507-01 8 126049538 126049538 A G KIAA0196 Missense_Mutation p.I1041T 0.14 deleterious(0.02) benign(0.004) TCGA-55-8507-01 8 126071729 126071729 T C KIAA0196 Missense_Mutation p.D526G 0.15 deleterious(0.01) possibly_damaging(0.774) TCGA-55-8507-01 8 132052293 132052293 G A ADCY8 Missense_Mutation p.P96L 0.38 tolerated_low_confidence(0.35) benign(0.001) TCGA-55-8507-01 8 132052665 132052665 G T ADCY8 5'UTR 0.27 TCGA-55-8507-01 8 133584673 133584673 C A LRRC6 Missense_Mutation p.V428L 0.11 tolerated(0.25) benign(0.004) TCGA-55-8507-01 8 133900520 133900520 G C TG Missense_Mutation p.S823T 0.10 tolerated(0.24) benign(0.007) TCGA-55-8507-01 8 139164269 139164269 C T FAM135B Missense_Mutation p.G817S 0.46 tolerated_low_confidence(0.12) benign(0.017) TCGA-55-8507-01 8 13947812 13947812 C A SGCZ 3'UTR 0.37 TCGA-55-8507-01 8 139729068 139729068 C G COL22A1 Missense_Mutation p.K800N 0.38 probably_damaging(0.948) TCGA-55-8507-01 8 139833540 139833540 G T COL22A1 Silent p.R362R 0.30 TCGA-55-8507-01 8 139890335 139890335 G A COL22A1 Missense_Mutation p.R106W 0.19 unknown(0) TCGA-55-8507-01 8 144411637 144411637 C T TOP1MT Silent p.R81R 0.13 TCGA-55-8507-01 8 144623611 144623612 CG A ZC3H3 5'UTR 0.17 TCGA-55-8507-01 8 145059360 145059360 A G PARP10 Silent p.P270P 0.31 TCGA-55-8507-01 8 145667640 145667640 C A TONSL Missense_Mutation p.C245F 0.33 tolerated(1) probably_damaging(0.996) TCGA-55-8507-01 8 1626463 1626463 C A DLGAP2 Missense_Mutation p.T711N 0.15 tolerated(0.41) benign(0.281) TCGA-55-8507-01 8 1626464 1626464 C A DLGAP2 Silent p.T711T 0.16 TCGA-55-8507-01 8 18393415 18393415 T C PSD3 Silent p.L994L 0.19 TCGA-55-8507-01 8 1905111 1905111 A T ARHGEF10 Silent p.A1239A 0.36 TCGA-55-8507-01 8 24349579 24349579 G C ADAM7 Missense_Mutation p.R507P 0.25 tolerated(0.12) benign(0.41) TCGA-55-8507-01 8 24814060 24814060 C T CTD-2168K21.2 5'Flank 0.29 TCGA-55-8507-01 8 26627661 26627661 C A ADRA1A Intron 0.25 TCGA-55-8507-01 8 26722640 26722640 G C ADRA1A 5'UTR 0.32 TCGA-55-8507-01 8 3245027 3245027 G T CSMD1 Missense_Mutation p.P924H 0.15 probably_damaging(0.986) TCGA-55-8507-01 8 32505276 32505276 G C NRG1 Intron 0.28 TCGA-55-8507-01 8 3256938 3256938 G T CSMD1 Missense_Mutation p.H794N 0.20 possibly_damaging(0.457) TCGA-55-8507-01 8 33346310 33346310 G T MAK16 Missense_Mutation p.W78C 0.32 deleterious(0) probably_damaging(1) TCGA-55-8507-01 8 37692696 37692696 C G GPR124 Missense_Mutation p.A538G 0.25 deleterious(0.02) benign(0.001) TCGA-55-8507-01 8 42823172 42823172 G T HOOK3 Missense_Mutation p.V313L 0.32 tolerated(0.1) benign(0.109) TCGA-55-8507-01 8 51705310 51705310 C A SNTG1 Missense_Mutation p.P492H 0.20 deleterious(0) probably_damaging(1) TCGA-55-8507-01 8 55538751 55538751 T A RP1 Missense_Mutation p.V770D 0.26 tolerated(0.1) benign(0.312) TCGA-55-8507-01 8 55541128 55541128 G A RP1 Missense_Mutation p.M1562I 0.50 deleterious(0.01) benign(0.298) TCGA-55-8507-01 8 56986254 56986254 C G RPS20 Missense_Mutation p.K59N 0.17 deleterious(0.01) benign(0.443) TCGA-55-8507-01 8 59515900 59515900 C A NSMAF Missense_Mutation p.W336L 0.42 deleterious(0) probably_damaging(0.976) TCGA-55-8507-01 8 61655517 61655517 A T CHD7 Missense_Mutation p.Q509L 0.50 benign(0.069) TCGA-55-8507-01 8 65291701 65291706 TCCGGA - MIR124-2 RNA 0.24 TCGA-55-8507-01 8 65494558 65494558 C A BHLHE22 3'UTR 0.40 TCGA-55-8507-01 8 70744358 70744358 A C SLCO5A1 Missense_Mutation p.F184C 0.15 deleterious(0) probably_damaging(0.996) TCGA-55-8507-01 8 71520549 71520549 C T TRAM1 5'UTR 0.10 TCGA-55-8507-01 8 72981312 72981312 G T TRPA1 Missense_Mutation p.N130K 0.20 tolerated(0.57) benign(0.424) TCGA-55-8507-01 8 77618116 77618116 C A ZFHX4 Missense_Mutation p.P598H 0.36 probably_damaging(0.95) TCGA-55-8507-01 8 77618420 77618420 C A ZFHX4 Missense_Mutation p.F699L 0.23 benign(0.294) TCGA-55-8507-01 8 77618421 77618421 C A ZFHX4 Missense_Mutation p.R700S 0.24 possibly_damaging(0.555) TCGA-55-8507-01 8 77618853 77618853 C A ZFHX4 Missense_Mutation p.L844M 0.32 possibly_damaging(0.82) TCGA-55-8507-01 8 77767378 77767378 G T ZFHX4 Missense_Mutation p.D2741Y 0.40 probably_damaging(0.98) TCGA-55-8507-01 8 79645960 79645960 A T IL7 Silent p.T174T 0.11 TCGA-55-8507-01 8 80679289 80679289 A G HEY1 Silent p.S68S 0.08 TCGA-55-8507-01 8 87568356 87568356 T G CPNE3 Silent p.T427T 0.18 TCGA-55-8507-01 8 87645025 87645025 C G CNGB3 Missense_Mutation p.L425F 0.31 deleterious(0) benign(0.196) TCGA-55-8507-01 8 87680376 87680376 G T CNGB3 Missense_Mutation p.P172T 0.40 tolerated(0.07) benign(0.002) TCGA-55-8507-01 8 88885084 88885084 G C DCAF4L2 Silent p.L372L 0.10 TCGA-55-8507-01 8 89339500 89339500 C T MMP16 5'UTR 0.11 TCGA-55-8507-01 8 92982935 92982935 G T RUNX1T1 Missense_Mutation p.A508E 0.32 deleterious(0) probably_damaging(0.974) TCGA-55-8507-01 9 101068576 101068576 G A GABBR2 Missense_Mutation p.L686F 0.44 deleterious(0) possibly_damaging(0.541) TCGA-55-8507-01 9 104499956 104499956 C A GRIN3A Silent p.L102L 0.19 TCGA-55-8507-01 9 107266632 107266632 T A OR13F1 Missense_Mutation p.V30E 0.35 deleterious(0) benign(0.332) TCGA-55-8507-01 9 120466644 120466644 G C TLR4 5'Flank 0.36 TCGA-55-8507-01 9 123620246 123620246 C A PHF19 Missense_Mutation p.E573D 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-55-8507-01 9 125377189 125377189 C A OR1Q1 Missense_Mutation p.P58H 0.56 deleterious(0) probably_damaging(0.998) TCGA-55-8507-01 9 125551234 125551234 G A OR5C1 Missense_Mutation p.R8Q 0.55 tolerated(0.55) benign(0.001) TCGA-55-8507-01 9 126125453 126125453 C A CRB2 Missense_Mutation p.P135H 0.30 deleterious(0.04) unknown(0) TCGA-55-8507-01 9 133569301 133569301 G C EXOSC2 Splice_Site p.X41_splice 0.29 TCGA-55-8507-01 9 135781324 135781324 T C TSC1 Silent p.T547T 0.23 TCGA-55-8507-01 9 135976678 135976678 C A RALGDS Intron 0.42 TCGA-55-8507-01 9 137701052 137701052 A T COL5A1 Silent p.P1130P 0.39 TCGA-55-8507-01 9 139994317 139994317 C T MAN1B1 Silent p.I300I 0.25 TCGA-55-8507-01 9 140772562 140772562 C A CACNA1B Nonsense_Mutation p.Y59* 0.21 TCGA-55-8507-01 9 14784488 14784488 T A FREM1 Missense_Mutation p.Q1441L 0.71 tolerated(0.2) benign(0.033) TCGA-55-8507-01 9 15874541 15874541 G T CCDC171 Missense_Mutation p.Q1160H 0.30 deleterious(0) probably_damaging(0.999) TCGA-55-8507-01 9 17135352 17135352 G T CNTLN Missense_Mutation p.A97S 0.29 tolerated_low_confidence(0.14) possibly_damaging(0.547) TCGA-55-8507-01 9 18706841 18706841 G T ADAMTSL1 Missense_Mutation p.Q557H 0.50 deleterious(0) probably_damaging(0.992) TCGA-55-8507-01 9 19786653 19786653 C G SLC24A2 Missense_Mutation p.S71T 0.30 tolerated(0.2) benign(0.002) TCGA-55-8507-01 9 21077533 21077533 G T IFNB1 Silent p.V112V 0.54 TCGA-55-8507-01 9 26842266 26842266 A T CAAP1 3'UTR 0.67 TCGA-55-8507-01 9 27948891 27948891 C A LINGO2 Silent p.G593G 0.31 TCGA-55-8507-01 9 38016008 38016008 C A SHB Nonsense_Mutation p.E280* 0.59 TCGA-55-8507-01 9 5300345 5300345 T C RLN2 Missense_Mutation p.E104G 0.08 tolerated(0.15) benign(0.019) TCGA-55-8507-01 9 70489957 70489957 G C CBWD5 Missense_Mutation p.L38V 0.30 tolerated(0.38) benign(0.003) TCGA-55-8507-01 9 84606978 84606978 C T SPATA31D1 Silent p.F531F 0.38 TCGA-55-8507-01 9 86399721 86399721 C A GKAP1 Missense_Mutation p.Q157H 0.78 deleterious(0.04) benign(0.047) TCGA-55-8507-01 9 96438932 96438932 C T PHF2 Silent p.T963T 0.30 TCGA-55-8507-01 9 97087888 97087888 G A NUTM2F Silent p.L115L 0.28 TCGA-55-8507-01 9 97863970 97863970 C A FANCC 3'UTR 0.59 TCGA-55-8507-01 X 101092785 101092785 A G NXF5 Silent p.D296D 0.71 TCGA-55-8507-01 X 101381869 101381869 C A TCEAL2 Missense_Mutation p.Q23K 0.12 tolerated(0.47) benign(0.042) TCGA-55-8507-01 X 10155566 10155566 G T CLCN4 Missense_Mutation p.K52N 0.28 tolerated(0.08) benign(0.002) TCGA-55-8507-01 X 101620165 101620165 G A NXF2B Silent p.F427F 0.38 TCGA-55-8507-01 X 102337932 102337932 C A NXF3 Missense_Mutation p.D231Y 0.74 deleterious(0.01) probably_damaging(0.968) TCGA-55-8507-01 X 102528881 102528881 G C TCEAL5 Missense_Mutation p.P204R 0.24 deleterious(0) probably_damaging(0.946) TCGA-55-8507-01 X 103495385 103495385 C G ESX1 Missense_Mutation p.V249L 0.33 tolerated(0.31) unknown(0) TCGA-55-8507-01 X 105280841 105280841 G T SERPINA7 Missense_Mutation p.P70H 0.76 deleterious(0) probably_damaging(0.996) TCGA-55-8507-01 X 105937354 105937354 G T RNF128 Missense_Mutation p.S14I 0.38 deleterious(0.02) benign(0.088) TCGA-55-8507-01 X 107978580 107978580 C G IRS4 Missense_Mutation p.C332S 0.67 tolerated(0.23) possibly_damaging(0.655) TCGA-55-8507-01 X 109696448 109696448 C A RGAG1 Missense_Mutation p.S868Y 0.42 deleterious(0) probably_damaging(0.971) TCGA-55-8507-01 X 118151699 118151699 G T LONRF3 3'UTR 0.47 TCGA-55-8507-01 X 120009127 120009127 C G CT47B1 Missense_Mutation p.R133P 0.45 deleterious(0.04) possibly_damaging(0.808) TCGA-55-8507-01 X 120182839 120182839 G T GLUD2 Missense_Mutation p.G434V 0.62 deleterious(0) probably_damaging(1) TCGA-55-8507-01 X 125686414 125686414 C A DCAF12L1 Missense_Mutation p.V60L 0.75 tolerated(0.39) benign(0.022) TCGA-55-8507-01 X 127185014 127185014 G T ACTRT1 3'UTR 0.44 TCGA-55-8507-01 X 129506911 129506911 G A SLC25A14 Missense_Mutation p.R322K 0.50 tolerated(1) benign(0.009) TCGA-55-8507-01 X 130678918 130678918 C T OR13H1 Silent p.L291L 0.33 TCGA-55-8507-01 X 135579719 135579719 G T HTATSF1 Intron 0.84 TCGA-55-8507-01 X 140994325 140994325 C G MAGEC1 Missense_Mutation p.P379A 0.77 deleterious_low_confidence(0.01) possibly_damaging(0.539) TCGA-55-8507-01 X 142718935 142718935 T C SLITRK4 5'UTR 0.27 TCGA-55-8507-01 X 144906401 144906401 C T SLITRK2 Missense_Mutation p.P820S 0.63 tolerated(0.34) benign(0.397) TCGA-55-8507-01 X 148068985 148068985 C G AFF2 Missense_Mutation p.R1238G 0.07 deleterious(0) probably_damaging(0.982) TCGA-55-8507-01 X 151123540 151123540 C T GABRE Missense_Mutation p.R385H 0.44 tolerated(0.31) benign(0.133) TCGA-55-8507-01 X 152225754 152225754 G C PNMA3 Missense_Mutation p.R114S 0.73 tolerated(0.16) possibly_damaging(0.62) TCGA-55-8507-01 X 153215717 153215717 G A HCFC1 Missense_Mutation p.A1994V 0.12 deleterious(0) possibly_damaging(0.874) TCGA-55-8507-01 X 153662611 153662611 C G ATP6AP1 Missense_Mutation p.Q248E 0.27 tolerated(0.98) benign(0.004) TCGA-55-8507-01 X 17743554 17743554 G T NHS Missense_Mutation p.G422V 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-55-8507-01 X 18668699 18668699 A T CDKL5 Silent p.P989P 0.62 TCGA-55-8507-01 X 21675973 21675973 G T KLHL34 5'UTR 0.38 TCGA-55-8507-01 X 21871551 21871551 A G MBTPS2 Silent p.A200A 0.31 TCGA-55-8507-01 X 26212556 26212556 A C MAGEB6 Missense_Mutation p.K198T 0.25 deleterious(0) probably_damaging(0.981) TCGA-55-8507-01 X 2840004 2840004 C T ARSD Missense_Mutation p.A86T 0.25 deleterious(0.02) probably_damaging(0.957) TCGA-55-8507-01 X 3235694 3235694 G C MXRA5 Missense_Mutation p.L2010V 0.42 deleterious(0) probably_damaging(1) TCGA-55-8507-01 X 3235695 3235695 G T MXRA5 Silent p.T2009T 0.41 TCGA-55-8507-01 X 3242959 3242959 C T MXRA5 Missense_Mutation p.C256Y 0.77 deleterious(0) probably_damaging(0.999) TCGA-55-8507-01 X 35820856 35820856 C A MAGEB16 Silent p.G181G 0.67 TCGA-55-8507-01 X 37028469 37028469 G T FAM47C Silent p.R662R 0.34 TCGA-55-8507-01 X 41646518 41646518 C A CASK Missense_Mutation p.S64I 0.59 tolerated(0.16) possibly_damaging(0.507) TCGA-55-8507-01 X 48457770 48457770 G T WDR13 Silent p.G104G 0.32 TCGA-55-8507-01 X 55514938 55514938 C A USP51 Missense_Mutation p.R145S 0.81 tolerated_low_confidence(0.22) unknown(0) TCGA-55-8507-01 X 55650437 55650437 C A FOXR2 Missense_Mutation p.P98H 0.72 deleterious(0.05) benign(0.031) TCGA-55-8507-01 X 73963380 73963380 A G KIAA2022 Missense_Mutation p.F338L 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-8507-01 X 75649492 75649492 C A MAGEE1 Missense_Mutation p.T390N 0.22 deleterious_low_confidence(0) possibly_damaging(0.497) TCGA-55-8507-01 X 79698360 79698360 C A FAM46D Missense_Mutation p.L108I 0.76 tolerated(0.05) probably_damaging(0.999) TCGA-55-8507-01 X 83581279 83581279 C A HDX Missense_Mutation p.E618D 0.53 deleterious(0.01) benign(0.217) TCGA-55-8507-01 X 91134192 91134192 A T PCDH11X Missense_Mutation p.S985C 0.16 tolerated(0.28) benign(0.248) TCGA-55-8507-01 X 96213016 96213016 G T DIAPH2 Nonsense_Mutation p.G602* 0.85 TCGA-55-8507-01 Y 4968668 4968668 A T PCDH11Y Missense_Mutation p.S1017C 0.74 tolerated(0.2) benign(0.03) TCGA-55-8507-01 Y 5369219 5369219 A G PCDH11Y Missense_Mutation p.Y1084C 0.15 deleterious(0.01) benign(0.043) TCGA-55-8507-01 Y 5369235 5369235 C T PCDH11Y Silent p.Y1089Y 0.62 TCGA-55-8508-01 10 105330838 105330838 C A NEURL1 Missense_Mutation p.P99T 0.32 deleterious(0) probably_damaging(1) TCGA-55-8508-01 10 118357601 118357601 C A PNLIPRP1 Missense_Mutation p.P246H 0.41 deleterious(0) probably_damaging(1) TCGA-55-8508-01 10 118357602 118357602 C G PNLIPRP1 Silent p.P246P 0.39 TCGA-55-8508-01 10 13735916 13735916 C T FRMD4A Missense_Mutation p.G367S 0.12 tolerated(0.05) probably_damaging(0.977) TCGA-55-8508-01 10 16877175 16877175 G T CUBN Missense_Mutation p.H3400Q 0.18 tolerated(0.2) benign(0.001) TCGA-55-8508-01 10 17130212 17130212 C A CUBN Missense_Mutation p.G633V 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-8508-01 10 18827197 18827197 C A CACNB2 Missense_Mutation p.T464N 0.36 deleterious(0) possibly_damaging(0.895) TCGA-55-8508-01 10 6002511 6002511 G A IL15RA Silent p.P134P 0.25 TCGA-55-8508-01 11 100095520 100095520 G A CNTN5 Missense_Mutation p.D661N 0.14 deleterious(0.05) possibly_damaging(0.83) TCGA-55-8508-01 11 106647305 106647305 C A GUCY1A2 Nonsense_Mutation p.E566* 0.21 TCGA-55-8508-01 11 106647306 106647306 C A GUCY1A2 Silent p.V565V 0.21 TCGA-55-8508-01 11 108216545 108216545 C T ATM Missense_Mutation p.R2832C 0.24 deleterious(0) probably_damaging(0.993) TCGA-55-8508-01 11 111229611 111229611 G T POU2AF1 Silent p.R17R 0.24 TCGA-55-8508-01 11 111709090 111709090 G C ALG9 Missense_Mutation p.H231Q 0.21 tolerated(0.06) probably_damaging(0.975) TCGA-55-8508-01 11 113102932 113102932 G A NCAM1 Nonsense_Mutation p.W476* 0.24 TCGA-55-8508-01 11 14482762 14482762 C T COPB1 Silent p.Q842Q 0.19 TCGA-55-8508-01 11 15098897 15098897 T G CALCB Missense_Mutation p.L97R 0.23 deleterious(0) probably_damaging(1) TCGA-55-8508-01 11 2181039 2181039 C T INS 3'UTR 0.27 TCGA-55-8508-01 11 22257741 22257741 C T ANO5 Silent p.G227G 0.14 TCGA-55-8508-01 11 22770675 22770675 G C GAS2 Silent p.V161V 0.24 TCGA-55-8508-01 11 5290843 5290843 G T HBE1 Silent p.P52P 0.37 TCGA-55-8508-01 11 55038548 55038548 C A TRIM48 3'UTR 0.08 TCGA-55-8508-01 11 55111534 55111534 G T OR4A16 Silent p.S286S 0.11 TCGA-55-8508-01 11 55405857 55405857 T A OR4P4 Silent p.T8T 0.11 TCGA-55-8508-01 11 55541405 55541405 T A OR5D13 Missense_Mutation p.F164L 0.20 tolerated(0.66) benign(0.049) TCGA-55-8508-01 11 55703818 55703818 G T OR5I1 Missense_Mutation p.P20Q 0.15 deleterious(0) benign(0.347) TCGA-55-8508-01 11 55735811 55735811 G T OR10AG1 Missense_Mutation p.H43Q 0.14 deleterious(0) benign(0) TCGA-55-8508-01 11 57095848 57095848 G T SSRP1 Silent p.R512R 0.29 TCGA-55-8508-01 11 5841673 5841673 G C OR52N2 Missense_Mutation p.M36I 0.29 tolerated(0.08) benign(0.008) TCGA-55-8508-01 11 60156889 60156889 A T MS4A7 Silent p.A122A 0.33 TCGA-55-8508-01 11 62559871 62559871 G C NXF1 3'UTR 0.09 TCGA-55-8508-01 11 6943061 6943061 C T OR2D3 Nonsense_Mutation p.R277* 0.27 TCGA-55-8508-01 11 71949314 71949314 A G INPPL1 Missense_Mutation p.T1232A 0.31 deleterious(0) unknown(0) TCGA-55-8508-01 11 82868632 82868632 G T PCF11 Missense_Mutation p.A51S 0.12 tolerated(0.07) benign(0.034) TCGA-55-8508-01 12 125397809 125397810 - CCA UBC In_Frame_Ins p.V169dup 0.33 TCGA-55-8508-01 12 14924033 14924033 G A HIST4H4 5'UTR 0.21 TCGA-55-8508-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.30 deleterious(0.04) probably_damaging(0.993) TCGA-55-8508-01 12 39713809 39713809 C A KIF21A Missense_Mutation p.R1226S 0.19 tolerated(0.07) benign(0.017) TCGA-55-8508-01 12 39713810 39713810 C A KIF21A Missense_Mutation p.R1226M 0.17 deleterious(0) possibly_damaging(0.664) TCGA-55-8508-01 12 49723991 49723991 G A TROAP Missense_Mutation p.V455I 0.14 deleterious(0.01) benign(0.217) TCGA-55-8508-01 12 5154802 5154802 G T KCNA5 Missense_Mutation p.G497C 0.20 deleterious(0) probably_damaging(1) TCGA-55-8508-01 12 51754523 51754523 G A GALNT6 Silent p.N383N 0.11 TCGA-55-8508-01 12 56030937 56030937 C A OR10P1 Missense_Mutation p.P88T 0.24 tolerated(0.57) benign(0.002) TCGA-55-8508-01 12 56348107 56348107 G A PMEL Missense_Mutation p.S633F 0.26 tolerated(0.12) possibly_damaging(0.712) TCGA-55-8508-01 12 71971720 71971720 C A LGR5 Missense_Mutation p.N408K 0.19 deleterious(0) probably_damaging(1) TCGA-55-8508-01 12 78513429 78513429 C - NAV3 Frame_Shift_Del p.R1152Efs*27 0.32 TCGA-55-8508-01 13 101717842 101717842 G T NALCN Missense_Mutation p.D1506E 0.15 tolerated(1) benign(0.008) TCGA-55-8508-01 13 33591082 33591082 G T KL Missense_Mutation p.E168D 0.50 tolerated(0.43) benign(0.073) TCGA-55-8508-01 13 41635785 41635785 G C WBP4 5'UTR 0.14 TCGA-55-8508-01 13 53420525 53420525 C A PCDH8 Missense_Mutation p.G683C 0.15 deleterious(0) benign(0.317) TCGA-55-8508-01 14 20528431 20528431 C A OR4L1 Silent p.A76A 0.29 TCGA-55-8508-01 14 23874847 23874847 A T MYH6 Missense_Mutation p.W112R 0.57 deleterious(0) probably_damaging(0.994) TCGA-55-8508-01 14 74991896 74991896 C T LTBP2 Missense_Mutation p.G821R 0.13 tolerated(0.55) benign(0.007) TCGA-55-8508-01 14 76905940 76905940 G A ESRRB Missense_Mutation p.G82S 0.37 tolerated(0.43) benign(0.002) TCGA-55-8508-01 14 81025640 81025640 C A CEP128 Missense_Mutation p.V955L 0.17 deleterious(0.04) benign(0.009) TCGA-55-8508-01 14 88729651 88729651 C T KCNK10 Silent p.E99E 0.05 TCGA-55-8508-01 14 94401017 94401017 G A ASB2 Silent p.Y631Y 0.16 TCGA-55-8508-01 14 95053976 95053976 G T SERPINA5 Nonsense_Mutation p.E93* 0.11 TCGA-55-8508-01 15 20874864 20874864 G T NBEAP1 RNA 0.26 TCGA-55-8508-01 15 43569147 43569147 G A TGM7 Missense_Mutation p.T629I 0.43 tolerated(0.7) possibly_damaging(0.724) TCGA-55-8508-01 15 44068350 44068350 C T ELL3 Splice_Site p.X57_splice 0.50 TCGA-55-8508-01 15 70959745 70959745 T G UACA Missense_Mutation p.N1093T 0.34 tolerated(0.08) benign(0.002) TCGA-55-8508-01 15 80412677 80412677 A G ZFAND6 5'UTR 0.12 TCGA-55-8508-01 16 18794521 18794521 G A RPS15A Intron 0.14 TCGA-55-8508-01 16 19590415 19590415 C T C16orf62 Missense_Mutation p.R248W 0.08 deleterious(0) probably_damaging(0.951) TCGA-55-8508-01 16 21698880 21698880 G - OTOA Frame_Shift_Del p.V183Cfs*2 0.25 TCGA-55-8508-01 16 23400180 23400180 T C COG7 3'UTR 0.33 TCGA-55-8508-01 16 57206783 57206783 C T FAM192A Missense_Mutation p.C44Y 0.20 deleterious(0.02) probably_damaging(0.979) TCGA-55-8508-01 16 71423854 71423854 C T CALB2 3'UTR 0.26 TCGA-55-8508-01 16 81078672 81078672 G T ATMIN 3'UTR 0.14 TCGA-55-8508-01 16 88098906 88098906 G T BANP Missense_Mutation p.A438S 0.19 tolerated_low_confidence(0.57) benign(0) TCGA-55-8508-01 17 10304394 10304394 C T MYH8 Missense_Mutation p.D1075N 0.13 deleterious(0.02) possibly_damaging(0.697) TCGA-55-8508-01 17 16638789 16638789 G A CCDC144A Silent p.K1068K 0.12 TCGA-55-8508-01 17 21826287 21826287 G C FAM27L RNA 0.10 TCGA-55-8508-01 17 32483155 32483155 C T ASIC2 Missense_Mutation p.V133M 0.36 tolerated(0.23) benign(0.322) TCGA-55-8508-01 17 34079593 34079593 G C GAS2L2 Missense_Mutation p.P93A 0.11 deleterious(0) probably_damaging(1) TCGA-55-8508-01 17 40932702 40932702 G T WNK4 5'UTR 0.10 TCGA-55-8508-01 17 55184186 55184186 T C AKAP1 Missense_Mutation p.I454T 0.18 tolerated(0.53) benign(0.002) TCGA-55-8508-01 17 55184187 55184187 C A AKAP1 Silent p.I454I 0.19 TCGA-55-8508-01 17 7324758 7324758 G A SPEM1 Missense_Mutation p.R255H 0.39 tolerated(0.31) probably_damaging(0.984) TCGA-55-8508-01 17 78921115 78921115 A G RPTOR Missense_Mutation p.N1077D 0.18 deleterious(0) probably_damaging(0.934) TCGA-55-8508-01 18 14782594 14782594 G T ANKRD30B Missense_Mutation p.E517D 0.23 tolerated(0.22) benign(0.25) TCGA-55-8508-01 18 20945620 20945620 C A TMEM241 Silent p.L193L 0.22 TCGA-55-8508-01 18 28659834 28659834 T C DSC2 Missense_Mutation p.T548A 0.12 deleterious(0.03) possibly_damaging(0.868) TCGA-55-8508-01 18 29039807 29039807 G T DSG3 Splice_Site p.X173_splice 0.25 TCGA-55-8508-01 18 51729231 51729231 A T MBD2 Intron 0.32 TCGA-55-8508-01 18 76757442 76757442 C A SALL3 3'Flank 0.30 TCGA-55-8508-01 19 1220487 1220487 G T STK11 Missense_Mutation p.D194Y 0.50 deleterious(0) probably_damaging(1) TCGA-55-8508-01 19 17838800 17838800 C T MAP1S Silent p.P869P 0.55 TCGA-55-8508-01 19 18724997 18724997 G T TMEM59L Nonsense_Mutation p.E134* 0.42 TCGA-55-8508-01 19 21992515 21992515 T G ZNF43 Missense_Mutation p.E108D 0.30 tolerated(0.24) benign(0.101) TCGA-55-8508-01 19 22785415 22785415 T G AC011467.1 5'Flank 0.11 TCGA-55-8508-01 19 24270001 24270002 CG - ZNF254 5'UTR 0.25 TCGA-55-8508-01 19 44934621 44934621 A T ZNF229 Missense_Mutation p.V112E 0.34 deleterious(0.03) benign(0.1) TCGA-55-8508-01 19 49206480 49206480 C T FUT2 Silent p.N89N 0.12 TCGA-55-8508-01 19 50370365 50370365 G A PNKP Silent p.L33L 0.26 TCGA-55-8508-01 19 57325147 57325147 C A PEG3 Missense_Mutation p.G1555C 0.29 deleterious(0.01) possibly_damaging(0.797) TCGA-55-8508-01 19 58016058 58016058 T C ZNF773 Missense_Mutation p.Y23H 0.16 tolerated(0.05) benign(0.016) TCGA-55-8508-01 19 58806340 58806340 G T ZNF8 Missense_Mutation p.R389I 0.21 deleterious(0) probably_damaging(0.999) TCGA-55-8508-01 19 9075071 9075071 C T MUC16 Silent p.T4125T 0.12 TCGA-55-8508-01 19 9077592 9077592 A T MUC16 Missense_Mutation p.L3285H 0.29 unknown(0) TCGA-55-8508-01 19 9271173 9271173 A G ZNF317 Silent p.G284G 0.08 TCGA-55-8508-01 1 110741111 110741111 C A SLC6A17 3'UTR 0.30 TCGA-55-8508-01 1 152331269 152331269 C A FLG2 Missense_Mutation p.G31V 0.06 unknown(0) TCGA-55-8508-01 1 156536336 156536336 C T IQGAP3 Nonsense_Mutation p.W43* 0.28 TCGA-55-8508-01 1 158436191 158436191 C A OR10K1 Silent p.I280I 0.27 TCGA-55-8508-01 1 158590250 158590250 C A SPTA1 Missense_Mutation p.D2043Y 0.32 deleterious(0) possibly_damaging(0.663) TCGA-55-8508-01 1 176915203 176915203 G T ASTN1 Missense_Mutation p.T703K 0.27 deleterious(0.02) benign(0.004) TCGA-55-8508-01 1 181745234 181745234 C T CACNA1E Intron 0.32 TCGA-55-8508-01 1 190068156 190068156 G A BRINP3 Silent p.D431D 0.09 TCGA-55-8508-01 1 215345388 215345388 T C KCNK2 Missense_Mutation p.F229L 0.24 deleterious(0.03) benign(0.376) TCGA-55-8508-01 1 216166426 216166426 G - USH2A Frame_Shift_Del p.A2249Pfs*30 0.11 TCGA-55-8508-01 1 216595563 216595563 C A USH2A Missense_Mutation p.R39M 0.22 probably_damaging(0.927) TCGA-55-8508-01 1 248458124 248458124 C A OR2T12 Missense_Mutation p.G253C 0.16 deleterious(0.01) benign(0.003) TCGA-55-8508-01 1 248458125 248458125 A G OR2T12 Silent p.A252A 0.16 TCGA-55-8508-01 1 248636969 248636969 G A OR2T3 Missense_Mutation p.M106I 0.27 tolerated(1) benign(0.004) TCGA-55-8508-01 1 36019983 36019984 - A KIAA0319L Frame_Shift_Ins p.C37Lfs*15 0.23 TCGA-55-8508-01 1 40716957 40716957 A C TMCO2 Missense_Mutation p.K80N 0.11 deleterious_low_confidence(0.04) benign(0) TCGA-55-8508-01 1 44070993 44070993 C T PTPRF Silent p.L1090L 0.18 TCGA-55-8508-01 1 67155887 67155887 C - SGIP1 Frame_Shift_Del p.P487Lfs*11 0.15 TCGA-55-8508-01 1 70493920 70493920 G T LRRC7 Missense_Mutation p.V583F 0.17 deleterious(0) probably_damaging(0.997) TCGA-55-8508-01 1 89319009 89319009 C A GTF2B Missense_Mutation p.V280F 0.06 deleterious(0) probably_damaging(0.996) TCGA-55-8508-01 20 14306503 14306503 C A FLRT3 Missense_Mutation p.W550C 0.30 deleterious(0.05) benign(0.325) TCGA-55-8508-01 20 16021851 16021851 G T MACROD2 Missense_Mutation p.G387C 0.28 deleterious_low_confidence(0) possibly_damaging(0.789) TCGA-55-8508-01 20 46307466 46307466 C A SULF2 Missense_Mutation p.G383W 0.27 deleterious(0) probably_damaging(1) TCGA-55-8508-01 20 47896877 47896877 G A ZNFX1 5'Flank 0.21 TCGA-55-8508-01 21 10862800 10862800 G T IGHV1OR21-1 Missense_Mutation p.K32N 0.15 deleterious(0.02) possibly_damaging(0.719) TCGA-55-8508-01 21 22710812 22710812 G T NCAM2 Missense_Mutation p.W334C 0.25 deleterious(0) probably_damaging(1) TCGA-55-8508-01 21 41457594 41457594 T C DSCAM Missense_Mutation p.Y1356C 0.12 deleterious(0.04) probably_damaging(0.967) TCGA-55-8508-01 22 32500800 32500800 A T SLC5A1 Missense_Mutation p.N565Y 0.37 tolerated(0.1) benign(0.01) TCGA-55-8508-01 2 105959428 105959428 G A C2orf49 Silent p.P130P 0.18 TCGA-55-8508-01 2 125192069 125192069 G T CNTNAP5 Missense_Mutation p.V180F 0.21 deleterious(0.01) benign(0.128) TCGA-55-8508-01 2 136872458 136872458 G A CXCR4 Missense_Mutation p.S351L 0.41 deleterious_low_confidence(0.01) unknown(0) TCGA-55-8508-01 2 141643728 141643728 C A LRP1B Nonsense_Mutation p.G1315* 0.32 TCGA-55-8508-01 2 141643729 141643729 C T LRP1B Silent p.R1314R 0.31 TCGA-55-8508-01 2 141812686 141812686 T A LRP1B Missense_Mutation p.K517N 0.38 benign(0.403) TCGA-55-8508-01 2 173894896 173894896 A T RAPGEF4 Nonsense_Mutation p.K855* 0.31 TCGA-55-8508-01 2 217528817 217528817 G C IGFBP2 Missense_Mutation p.R323P 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.659) TCGA-55-8508-01 2 39082376 39082376 T C DHX57 Silent p.Q576Q 0.51 TCGA-55-8508-01 2 79878692 79878692 G A CTNNA2 Missense_Mutation p.A4T 0.59 tolerated_low_confidence(0.56) benign(0.005) TCGA-55-8508-01 3 122003063 122003063 G T CASR Missense_Mutation p.Q764H 0.21 tolerated(0.72) benign(0.001) TCGA-55-8508-01 3 122003064 122003064 G T CASR Nonsense_Mutation p.E765* 0.23 TCGA-55-8508-01 3 126062589 126062589 G A KLF15 Missense_Mutation p.S411F 0.27 deleterious(0.01) benign(0.032) TCGA-55-8508-01 3 12977588 12977588 G A IQSEC1 Missense_Mutation p.R324W 0.24 deleterious_low_confidence(0) possibly_damaging(0.556) TCGA-55-8508-01 3 138121072 138121072 G T MRAS Silent p.R196R 0.07 TCGA-55-8508-01 3 140281772 140281772 T A CLSTN2 Missense_Mutation p.Y778N 0.13 deleterious(0) probably_damaging(0.971) TCGA-55-8508-01 3 147131171 147131171 C A ZIC1 Missense_Mutation p.P393T 0.11 deleterious(0.05) probably_damaging(0.987) TCGA-55-8508-01 3 151165983 151165983 G A IGSF10 Missense_Mutation p.H596Y 0.13 tolerated(1) benign(0.006) TCGA-55-8508-01 3 153202335 153202335 G A C3orf79 5'UTR 0.16 TCGA-55-8508-01 3 187446270 187446270 G - BCL6 Frame_Shift_Del p.P473Rfs*117 0.23 TCGA-55-8508-01 3 35756932 35756932 C T ARPP21 Missense_Mutation p.S266L 0.17 tolerated(0.12) benign(0.015) TCGA-55-8508-01 3 3887047 3887047 T A LRRN1 Missense_Mutation p.L241H 0.19 deleterious(0) probably_damaging(1) TCGA-55-8508-01 3 50095896 50095896 G A RBM6 Silent p.E677E 0.17 TCGA-55-8508-01 3 54676209 54676209 G A CACNA2D3 Missense_Mutation p.D370N 0.14 deleterious(0) probably_damaging(1) TCGA-55-8508-01 3 78717321 78717321 C T ROBO1 Missense_Mutation p.G588R 0.20 deleterious(0) probably_damaging(1) TCGA-55-8508-01 3 81695601 81695601 C A GBE1 Nonsense_Mutation p.E242* 0.14 TCGA-55-8508-01 3 98250950 98250950 A G GPR15 Missense_Mutation p.T25A 0.26 tolerated(0.55) benign(0.001) TCGA-55-8508-01 4 102946533 102946533 G C BANK1 Missense_Mutation p.L487F 0.21 deleterious(0) probably_damaging(0.999) TCGA-55-8508-01 4 134072276 134072276 C G PCDH10 Nonsense_Mutation p.Y327* 0.20 TCGA-55-8508-01 4 147796023 147796023 C A TTC29 Missense_Mutation p.R215L 0.17 tolerated(0.07) probably_damaging(0.937) TCGA-55-8508-01 4 160259586 160259586 A T RAPGEF2 Silent p.S592S 0.21 TCGA-55-8508-01 4 177114137 177114137 C G SPATA4 Missense_Mutation p.E147Q 0.07 tolerated(0.1) possibly_damaging(0.51) TCGA-55-8508-01 4 20618587 20618587 G T SLIT2 Missense_Mutation p.G1301V 0.32 tolerated(0.33) probably_damaging(0.932) TCGA-55-8508-01 4 2306716 2306716 C A ZFYVE28 Missense_Mutation p.A451S 0.10 tolerated_low_confidence(0.58) benign(0.011) TCGA-55-8508-01 4 39460154 39460154 G A RPL9 5'UTR 0.23 TCGA-55-8508-01 4 66230805 66230805 T A EPHA5 Silent p.L722L 0.18 TCGA-55-8508-01 4 70066318 70066318 C A UGT2B11 Missense_Mutation p.R477L 0.22 deleterious(0.01) probably_damaging(1) TCGA-55-8508-01 4 70465083 70465083 C G UGT2A1 Missense_Mutation p.G459R 0.15 tolerated(0.05) benign(0.395) TCGA-55-8508-01 5 135583317 135583317 G A TRPC7 Silent p.N562N 0.16 TCGA-55-8508-01 5 139661198 139661198 T C PFDN1 Intron 0.26 TCGA-55-8508-01 5 139876809 139876809 A G ANKHD1 Missense_Mutation p.M984V 0.36 unknown(0) TCGA-55-8508-01 5 139947518 139947518 T A SLC35A4 Missense_Mutation p.L255H 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-8508-01 5 140230363 140230363 C A PCDHA9 Silent p.G761G 0.14 TCGA-55-8508-01 5 168690690 168690690 G C SLIT3 Intron 0.08 TCGA-55-8508-01 5 23522821 23522821 C A PRDM9 Missense_Mutation p.R237S 0.06 deleterious(0.01) benign(0.006) TCGA-55-8508-01 5 5476138 5476138 G T KIAA0947 Missense_Mutation p.A2156S 0.10 tolerated(0.39) benign(0.061) TCGA-55-8508-01 5 85578442 85578442 C G NBPF22P RNA 0.39 TCGA-55-8508-01 5 9154749 9154749 C G SEMA5A Missense_Mutation p.L444F 0.10 deleterious(0.01) possibly_damaging(0.717) TCGA-55-8508-01 6 100896392 100896392 C A SIM1 Missense_Mutation p.A236S 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-55-8508-01 6 134496020 134496020 C G SGK1 Intron 0.19 TCGA-55-8508-01 6 136913358 136913358 C A MAP3K5 Nonsense_Mutation p.E1060* 0.16 TCGA-55-8508-01 6 2116020 2116020 G T GMDS Silent p.A110A 0.04 TCGA-55-8508-01 6 29141949 29141949 C A OR2J2 Missense_Mutation p.F179L 0.04 tolerated(0.66) benign(0.011) TCGA-55-8508-01 6 33139582 33139582 G A COL11A2 Nonsense_Mutation p.R934* 0.45 TCGA-55-8508-01 6 33288951 33288951 C T DAXX Missense_Mutation p.E201K 0.13 deleterious(0) possibly_damaging(0.887) TCGA-55-8508-01 6 42890859 42890859 T A PTCRA Missense_Mutation p.D51E 0.06 tolerated(0.08) possibly_damaging(0.828) TCGA-55-8508-01 6 49802896 49802896 G T CRISP1 3'UTR 0.17 TCGA-55-8508-01 6 56047370 56047370 A C COL21A1 Missense_Mutation p.L16R 0.29 deleterious(0) possibly_damaging(0.553) TCGA-55-8508-01 6 56047371 56047371 G T COL21A1 Missense_Mutation p.L16I 0.29 tolerated(0.05) benign(0.035) TCGA-55-8508-01 6 66094382 66094382 C A EYS Missense_Mutation p.G399V 0.17 deleterious(0) benign(0.051) TCGA-55-8508-01 6 80626572 80626572 G T ELOVL4 Missense_Mutation p.T233K 0.17 tolerated(0.08) probably_damaging(0.958) TCGA-55-8508-01 7 102036967 102036967 C A PRKRIP1 Silent p.R37R 0.24 TCGA-55-8508-01 7 114329890 114329890 C A FOXP2 Missense_Mutation p.P711Q 0.35 deleterious(0) benign(0.007) TCGA-55-8508-01 7 121699858 121699858 C T PTPRZ1 Silent p.H2241H 0.35 TCGA-55-8508-01 7 124387291 124387291 G A GPR37 Missense_Mutation p.S377F 0.15 deleterious(0.04) probably_damaging(0.961) TCGA-55-8508-01 7 144463003 144463003 C G TPK1 Missense_Mutation p.D29H 0.26 tolerated(0.08) benign(0.356) TCGA-55-8508-01 7 150767986 150767986 C T SLC4A2 Silent p.L579L 0.10 TCGA-55-8508-01 7 20778751 20778751 G T ABCB5 Missense_Mutation p.G1005W 0.19 deleterious(0.01) benign(0.399) TCGA-55-8508-01 7 44096475 44096475 C - DBNL Frame_Shift_Del p.Q150Rfs*141 0.12 TCGA-55-8508-01 7 64168343 64168343 G A ZNF107 Missense_Mutation p.C554Y 0.16 deleterious(0.02) probably_damaging(0.958) TCGA-55-8508-01 7 75044244 75044244 G A POM121C 3'Flank 0.19 TCGA-55-8508-01 7 82580425 82580425 T A PCLO Missense_Mutation p.D3160V 0.07 unknown(0) TCGA-55-8508-01 7 82581620 82581620 C A PCLO Missense_Mutation p.W2883C 0.27 unknown(0) TCGA-55-8508-01 7 82784858 82784858 C G PCLO Missense_Mutation p.G367R 0.27 unknown(0) TCGA-55-8508-01 7 83014688 83014688 C A SEMA3E Missense_Mutation p.L599F 0.09 tolerated(1) probably_damaging(0.962) TCGA-55-8508-01 7 87047877 87047877 G - ABCB4 Frame_Shift_Del p.T819Qfs*16 0.11 TCGA-55-8508-01 8 120575254 120575254 C A ENPP2 Splice_Site p.X807_splice 0.18 TCGA-55-8508-01 8 139707123 139707123 C T COL22A1 Splice_Site p.X865_splice 0.13 TCGA-55-8508-01 8 22412384 22412384 G C SORBS3 Silent p.V37V 0.31 TCGA-55-8508-01 8 41555615 41555615 C A ANK1 Missense_Mutation p.R902S 0.07 deleterious(0.03) benign(0) TCGA-55-8508-01 8 53540687 53540687 C A RB1CC1 Missense_Mutation p.R1514L 0.15 deleterious(0.02) possibly_damaging(0.827) TCGA-55-8508-01 8 68152514 68152514 C A ARFGEF1 Silent p.T954T 0.22 TCGA-55-8508-01 8 75227431 75227431 C A JPH1 Silent p.P268P 0.11 TCGA-55-8508-01 8 77765957 77765957 C A ZFHX4 Missense_Mutation p.T2267N 0.14 possibly_damaging(0.598) TCGA-55-8508-01 9 113219572 113219572 G A SVEP1 Missense_Mutation p.R1213C 0.18 possibly_damaging(0.67) TCGA-55-8508-01 9 131024843 131024843 T A GOLGA2 Missense_Mutation p.Q351L 0.20 deleterious(0) probably_damaging(0.984) TCGA-55-8508-01 9 131761949 131761949 G T NUP188 Missense_Mutation p.E1236D 0.09 tolerated(0.3) benign(0.289) TCGA-55-8508-01 9 133942497 133942497 G A LAMC3 Missense_Mutation p.R833H 0.22 deleterious(0.01) benign(0.159) TCGA-55-8508-01 9 2084151 2084151 G T SMARCA2 Missense_Mutation p.L827F 0.36 possibly_damaging(0.849) TCGA-55-8508-01 9 2170433 2170433 A G SMARCA2 Missense_Mutation p.K1405R 0.45 benign(0.292) TCGA-55-8508-01 9 40702773 40702773 G T SPATA31A3 Missense_Mutation p.D144Y 0.15 deleterious(0.01) probably_damaging(0.979) TCGA-55-8508-01 9 6587215 6587215 C G GLDC Missense_Mutation p.Q592H 0.25 tolerated(0.15) benign(0.023) TCGA-55-8508-01 9 79634898 79634898 A C FOXB2 Missense_Mutation p.K110Q 0.17 deleterious(0.02) unknown(0) TCGA-55-8508-01 9 90321495 90321495 G T DAPK1 Missense_Mutation p.W1170L 0.15 deleterious(0) possibly_damaging(0.728) TCGA-55-8508-01 X 103434515 103434515 G T FAM199X 3'UTR 0.47 TCGA-55-8508-01 X 103495260 103495260 G T ESX1 Silent p.R290R 0.47 TCGA-55-8508-01 X 140996289 140996289 G A MAGEC1 Silent p.E1033E 0.14 TCGA-55-8508-01 X 147743534 147743534 G C AFF2 Missense_Mutation p.G96R 0.16 deleterious(0) probably_damaging(1) TCGA-55-8508-01 X 153171221 153171221 C A AVPR2 Silent p.A87A 0.25 TCGA-55-8508-01 X 18348707 18348707 C A SCML2 Missense_Mutation p.D31Y 0.23 deleterious(0.01) possibly_damaging(0.661) TCGA-55-8508-01 X 18845481 18845481 A T PPEF1 Missense_Mutation p.K613M 0.17 deleterious(0) possibly_damaging(0.76) TCGA-55-8508-01 X 34149168 34149168 G - FAM47A Frame_Shift_Del p.H410Ifs*20 0.36 TCGA-55-8508-01 X 34150217 34150217 T C FAM47A Missense_Mutation p.Y60C 0.38 tolerated(0.18) probably_damaging(0.982) TCGA-55-8508-01 X 37026732 37026732 C T FAM47C Silent p.L83L 0.43 TCGA-55-8508-01 X 41333694 41333694 C G NYX Missense_Mutation p.R330G 0.40 tolerated(0.06) benign(0.092) TCGA-55-8508-01 X 78011471 78011471 A G LPAR4 Missense_Mutation p.T369A 0.13 tolerated_low_confidence(0.33) benign(0.003) TCGA-55-8508-01 X 83129174 83129174 G A CYLC1 Missense_Mutation p.M486I 0.34 deleterious(0.04) benign(0.119) TCGA-55-8508-01 X 8503718 8503718 G A KAL1 Nonsense_Mutation p.Q586* 0.31 TCGA-55-8510-01 10 103990315 103990315 C T PITX3 Missense_Mutation p.A289T 0.23 tolerated(0.19) possibly_damaging(0.811) TCGA-55-8510-01 10 117884963 117884963 G A GFRA1 Missense_Mutation p.T180I 0.17 tolerated(0.1) benign(0.138) TCGA-55-8510-01 10 1229126 1229126 C T ADARB2 3'UTR 0.11 TCGA-55-8510-01 10 132891345 132891345 C A TCERG1L 3'UTR 0.11 TCGA-55-8510-01 10 45799706 45799706 C A OR13A1 Silent p.G55G 0.10 TCGA-55-8510-01 10 54031159 54031159 A G PRKG1 Missense_Mutation p.K408R 0.17 tolerated(0.05) possibly_damaging(0.723) TCGA-55-8510-01 10 54529050 54529050 T G MBL2 Silent p.S110S 0.07 TCGA-55-8510-01 10 55587224 55587224 C T PCDH15 Silent p.V1432V 0.12 TCGA-55-8510-01 10 83635849 83635849 C A NRG3 Silent p.A251A 0.15 TCGA-55-8510-01 11 104774201 104774201 G A RP11-693N9.2 RNA 0.09 TCGA-55-8510-01 11 104877898 104877898 C A CASP5 Missense_Mutation p.L128F 0.09 tolerated(0.15) benign(0.061) TCGA-55-8510-01 11 107197780 107197780 C A CWF19L2 Splice_Site p.X848_splice 0.23 TCGA-55-8510-01 11 110450311 110450311 C T ARHGAP20 Missense_Mutation p.R1120K 0.25 tolerated_low_confidence(1) benign(0) TCGA-55-8510-01 11 120918293 120918293 G T TBCEL Nonsense_Mutation p.G64* 0.22 TCGA-55-8510-01 11 123886891 123886891 A C OR10G4 Missense_Mutation p.I204L 0.20 tolerated(1) benign(0.001) TCGA-55-8510-01 11 1271091 1271091 C G MUC5B Silent p.P4327P 0.31 TCGA-55-8510-01 11 26700322 26700322 A T SLC5A12 Missense_Mutation p.Y506N 0.14 deleterious(0) possibly_damaging(0.642) TCGA-55-8510-01 11 27528321 27528321 C A LIN7C 5'Flank 0.26 TCGA-55-8510-01 11 32452126 32452126 A G WT1 Intron 0.31 TCGA-55-8510-01 11 4104591 4104591 G T STIM1 Missense_Mutation p.G446V 0.26 deleterious(0) possibly_damaging(0.898) TCGA-55-8510-01 11 46670729 46670729 G A ATG13 Missense_Mutation p.E105K 0.10 deleterious(0.04) possibly_damaging(0.901) TCGA-55-8510-01 11 47196566 47196566 T - ARFGAP2 Frame_Shift_Del p.Q160Hfs*49 0.16 TCGA-55-8510-01 11 55371305 55371305 A T OR4C11 Nonsense_Mutation p.L182* 0.09 TCGA-55-8510-01 11 55541710 55541710 C A OR5D13 Missense_Mutation p.P266H 0.12 deleterious(0.01) possibly_damaging(0.637) TCGA-55-8510-01 11 55607054 55607054 C A OR5D16 Missense_Mutation p.A276D 0.06 deleterious(0.02) probably_damaging(0.965) TCGA-55-8510-01 11 55904527 55904527 A - OR8J3 Frame_Shift_Del p.L223Cfs*4 0.08 TCGA-55-8510-01 11 55927072 55927072 C A OR8K5 Missense_Mutation p.C241F 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-8510-01 11 56128647 56128647 C T OR8J1 Silent p.L309L 0.14 TCGA-55-8510-01 11 57243849 57243849 C T RTN4RL2 Missense_Mutation p.P243L 0.15 deleterious(0) probably_damaging(0.989) TCGA-55-8510-01 11 57367419 57367419 G T SERPING1 Missense_Mutation p.R40I 0.28 tolerated(0.08) benign(0.008) TCGA-55-8510-01 11 62291793 62291793 T A AHNAK Missense_Mutation p.T3366S 0.12 benign(0.097) TCGA-55-8510-01 11 62751103 62751103 G T SLC22A6 Nonsense_Mutation p.C178* 0.30 TCGA-55-8510-01 11 64465257 64465257 G A NRXN2 Silent p.H246H 0.14 TCGA-55-8510-01 11 65271321 65271321 C T MALAT1 RNA 0.21 TCGA-55-8510-01 11 71821729 71821729 A T LRTOMT 3'UTR 0.21 TCGA-55-8510-01 11 72469605 72469605 G C STARD10 Nonsense_Mutation p.Y143* 0.16 TCGA-55-8510-01 11 76372327 76372327 G T LRRC32 Missense_Mutation p.L104M 0.19 deleterious(0) probably_damaging(1) TCGA-55-8510-01 11 8943062 8943062 C - C11orf16 Frame_Shift_Del p.G402Efs*23 0.17 TCGA-55-8510-01 11 89868777 89868777 C T NAALAD2 Nonsense_Mutation p.Q45* 0.16 TCGA-55-8510-01 11 92714834 92714834 C T MTNR1B Missense_Mutation p.H149Y 0.21 deleterious(0.03) possibly_damaging(0.637) TCGA-55-8510-01 12 13237958 13237958 G T GSG1 Silent p.P299P 0.33 TCGA-55-8510-01 12 13237959 13237959 G T GSG1 Missense_Mutation p.P299H 0.33 deleterious(0) probably_damaging(0.987) TCGA-55-8510-01 12 14019061 14019061 A T GRIN2B Missense_Mutation p.S28T 0.35 tolerated(0.06) benign(0.001) TCGA-55-8510-01 12 1963117 1963117 T A CACNA2D4 Missense_Mutation p.E749V 0.26 tolerated(0.08) benign(0.009) TCGA-55-8510-01 12 19646788 19646788 C A AEBP2 Missense_Mutation p.H348N 0.33 deleterious_low_confidence(0) possibly_damaging(0.901) TCGA-55-8510-01 12 2760899 2760899 C T CACNA1C Missense_Mutation p.R1395W 0.29 deleterious(0) probably_damaging(0.998) TCGA-55-8510-01 12 28458616 28458616 G T CCDC91 Missense_Mutation p.E48D 0.36 tolerated(1) benign(0.008) TCGA-55-8510-01 12 57594275 57594275 C T LRP1 Silent p.T3355T 0.20 TCGA-55-8510-01 12 7079658 7079658 G A PHB2 Missense_Mutation p.R17W 0.17 deleterious(0.01) possibly_damaging(0.836) TCGA-55-8510-01 12 7079659 7079659 G A PHB2 Silent p.P16P 0.17 TCGA-55-8510-01 12 78400686 78400686 C A NAV3 Silent p.L456L 0.33 TCGA-55-8510-01 12 78400687 78400687 A G NAV3 Missense_Mutation p.S457G 0.33 deleterious(0) possibly_damaging(0.746) TCGA-55-8510-01 12 78593173 78593173 C A NAV3 Silent p.R2171R 0.28 TCGA-55-8510-01 12 91502611 91502611 C T LUM Missense_Mutation p.S49N 0.11 deleterious(0.01) benign(0.371) TCGA-55-8510-01 12 9997060 9997060 A G KLRF1 Missense_Mutation p.I212V 0.13 tolerated(1) benign(0.013) TCGA-55-8510-01 13 109817349 109817349 G C MYO16 Missense_Mutation p.Q1733H 0.25 tolerated_low_confidence(0.1) possibly_damaging(0.564) TCGA-55-8510-01 13 32811925 32811925 A G FRY Missense_Mutation p.M2074V 0.09 tolerated(0.15) benign(0.001) TCGA-55-8510-01 13 46553965 46553965 C A ZC3H13 Missense_Mutation p.R632L 0.16 probably_damaging(0.993) TCGA-55-8510-01 13 79933723 79933723 T C RBM26 Missense_Mutation p.T506A 0.19 tolerated(0.08) benign(0.023) TCGA-55-8510-01 14 100795206 100795206 C A SLC25A47 Silent p.P157P 0.26 TCGA-55-8510-01 14 101493495 101493495 C T MIR329-2 RNA 0.10 TCGA-55-8510-01 14 103987647 103987647 C T CKB Silent p.L202L 0.33 TCGA-55-8510-01 14 20692376 20692376 G C OR11H6 Missense_Mutation p.G170R 0.21 deleterious(0) probably_damaging(0.996) TCGA-55-8510-01 14 20692748 20692748 C G OR11H6 Missense_Mutation p.L294V 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-55-8510-01 14 22102443 22102443 T A OR10G2 Missense_Mutation p.I186F 0.18 deleterious(0) probably_damaging(1) TCGA-55-8510-01 14 24877490 24877490 G T NYNRIN Missense_Mutation p.W205L 0.21 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-55-8510-01 14 42356987 42356987 A T LRFN5 Missense_Mutation p.I387F 0.19 tolerated(0.05) benign(0.157) TCGA-55-8510-01 14 56103206 56103206 C G KTN1 Missense_Mutation p.Q501E 0.21 tolerated(0.05) benign(0.399) TCGA-55-8510-01 14 64905885 64905885 C T MTHFD1 Missense_Mutation p.R557W 0.10 deleterious(0) probably_damaging(0.969) TCGA-55-8510-01 14 72055592 72055592 G C SIPA1L1 Missense_Mutation p.D335H 0.20 deleterious(0) probably_damaging(0.997) TCGA-55-8510-01 15 24922199 24922199 C G NPAP1 Silent p.T395T 0.15 TCGA-55-8510-01 15 25429486 25429486 G T SNORD115-8 RNA 0.13 TCGA-55-8510-01 15 28362196 28362196 G A HERC2 Silent p.L4459L 0.14 TCGA-55-8510-01 15 42114454 42114454 T A MAPKBP1 Missense_Mutation p.D1027E 0.21 deleterious(0) possibly_damaging(0.483) TCGA-55-8510-01 15 53081103 53081103 G T ONECUT1 Missense_Mutation p.L327I 0.22 deleterious(0) probably_damaging(0.995) TCGA-55-8510-01 15 66618429 66618429 G T DIS3L Missense_Mutation p.R643L 0.21 deleterious(0) probably_damaging(1) TCGA-55-8510-01 15 66618430 66618430 A T DIS3L Silent p.R643R 0.21 TCGA-55-8510-01 15 77907883 77907883 C A LINGO1 Silent p.R122R 0.16 TCGA-55-8510-01 15 79057007 79057007 G T ADAMTS7 Missense_Mutation p.R1437S 0.17 tolerated(0.25) benign(0.114) TCGA-55-8510-01 15 84611516 84611517 - T ADAMTSL3 Frame_Shift_Ins p.W763Lfs*4 0.19 TCGA-55-8510-01 15 89383305 89383305 C T ACAN Missense_Mutation p.R173W 0.19 deleterious(0) unknown(0) TCGA-55-8510-01 16 15029112 15029112 G T NPIPA1 5'Flank 0.36 TCGA-55-8510-01 16 15711344 15711344 C A KIAA0430 Silent p.T923T 0.32 TCGA-55-8510-01 16 16267233 16267233 G C ABCC6 Missense_Mutation p.R899G 0.40 tolerated(0.29) benign(0.001) TCGA-55-8510-01 16 27481653 27481653 C A GTF3C1 Missense_Mutation p.M1530I 0.35 tolerated(0.22) benign(0) TCGA-55-8510-01 16 27497397 27497397 C A GTF3C1 Missense_Mutation p.R1260L 0.19 deleterious(0) possibly_damaging(0.693) TCGA-55-8510-01 16 30133307 30133307 C A MAPK3 Missense_Mutation p.R64L 0.28 deleterious(0.02) benign(0.007) TCGA-55-8510-01 16 30991893 30991893 A G SETD1A Missense_Mutation p.Y1499C 0.21 unknown(0) TCGA-55-8510-01 16 30991895 30991895 T A SETD1A Missense_Mutation p.Y1500N 0.22 unknown(0) TCGA-55-8510-01 16 31155049 31155049 G A PRSS36 Missense_Mutation p.T277I 0.22 deleterious(0) probably_damaging(0.954) TCGA-55-8510-01 16 31473825 31473825 C T ARMC5 Silent p.G319G 0.24 TCGA-55-8510-01 16 601521 601521 G T CAPN15 Silent p.R734R 0.41 TCGA-55-8510-01 16 61687654 61687654 C A CDH8 Missense_Mutation p.G753V 0.26 deleterious(0) probably_damaging(1) TCGA-55-8510-01 16 66950107 66950108 - T CDH16 Splice_Site p.X96_splice 0.25 TCGA-55-8510-01 16 67228641 67228641 C T E2F4 Missense_Mutation p.P189L 0.10 deleterious(0) probably_damaging(0.987) TCGA-55-8510-01 16 70896105 70896105 G T HYDIN Missense_Mutation p.L3875M 0.33 probably_damaging(0.934) TCGA-55-8510-01 16 722738 722738 A T RHOT2 Silent p.T480T 0.29 TCGA-55-8510-01 16 76532478 76532478 G T CNTNAP4 Missense_Mutation p.G678V 0.27 tolerated(0.07) benign(0.081) TCGA-55-8510-01 16 87446138 87446138 C A ZCCHC14 Missense_Mutation p.R593L 0.11 deleterious(0) probably_damaging(0.998) TCGA-55-8510-01 17 10428077 10428077 G T MYH2 Silent p.L1656L 0.25 TCGA-55-8510-01 17 11593123 11593123 C A DNAH9 Missense_Mutation p.N1328K 0.20 benign(0.318) TCGA-55-8510-01 17 15222466 15222466 T A TEKT3 Splice_Site p.X222_splice 0.24 TCGA-55-8510-01 17 16326026 16326026 C A TRPV2 Missense_Mutation p.P150T 0.44 tolerated(0.2) possibly_damaging(0.847) TCGA-55-8510-01 17 1943820 1943820 G T DPH1 Missense_Mutation p.A315S 0.31 tolerated(0.37) benign(0.023) TCGA-55-8510-01 17 1943821 1943821 C T DPH1 Missense_Mutation p.A315V 0.30 tolerated(0.09) benign(0.201) TCGA-55-8510-01 17 32964803 32964803 A T TMEM132E Missense_Mutation p.Q836L 0.20 deleterious(0) probably_damaging(0.995) TCGA-55-8510-01 17 35902488 35902488 C A SYNRG Nonsense_Mutation p.E930* 0.18 TCGA-55-8510-01 17 39742668 39742668 T C KRT14 Missense_Mutation p.N140S 0.22 deleterious(0) probably_damaging(0.992) TCGA-55-8510-01 17 40267775 40267775 G A KAT2A Missense_Mutation p.A614V 0.15 deleterious(0) probably_damaging(0.993) TCGA-55-8510-01 17 48266618 48266618 C A COL1A1 Missense_Mutation p.G950W 0.30 unknown(0) TCGA-55-8510-01 17 4862793 4862793 C T SPAG7 3'UTR 0.10 TCGA-55-8510-01 17 54559978 54559978 G T ANKFN1 3'UTR 0.20 TCGA-55-8510-01 17 56051789 56051789 T C VEZF1 3'UTR 0.23 TCGA-55-8510-01 17 6023892 6023892 G A WSCD1 Missense_Mutation p.D547N 0.34 tolerated(0.21) benign(0.02) TCGA-55-8510-01 17 6387018 6387018 C A PITPNM3 Missense_Mutation p.G136W 0.25 deleterious(0) probably_damaging(1) TCGA-55-8510-01 17 7132552 7132552 T G DVL2 Missense_Mutation p.N287H 0.35 deleterious(0.02) possibly_damaging(0.846) TCGA-55-8510-01 17 7226286 7226286 C A NEURL4 Silent p.S858S 0.23 TCGA-55-8510-01 17 74569430 74569430 A G ST6GALNAC2 Missense_Mutation p.L126P 0.12 probably_damaging(1) TCGA-55-8510-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.34 TCGA-55-8510-01 17 77808128 77808128 C A CBX4 Missense_Mutation p.C438F 0.50 deleterious(0.01) possibly_damaging(0.655) TCGA-55-8510-01 17 78449351 78449351 G A NPTX1 Silent p.A204A 0.09 TCGA-55-8510-01 18 56826005 56826007 ATA TT SEC11C 3'UTR 0.17 TCGA-55-8510-01 18 61328386 61328386 G T SERPINB3 Nonsense_Mutation p.S22* 0.21 TCGA-55-8510-01 18 67508509 67508509 C G DOK6 Missense_Mutation p.R296G 0.16 deleterious_low_confidence(0.02) benign(0.01) TCGA-55-8510-01 18 76755364 76755364 G A SALL3 Missense_Mutation p.A1125T 0.25 deleterious(0) probably_damaging(0.999) TCGA-55-8510-01 19 10602875 10602875 C G KEAP1 Missense_Mutation p.D235H 0.31 deleterious(0) possibly_damaging(0.906) TCGA-55-8510-01 19 12867037 12867037 G A BEST2 Missense_Mutation p.R344H 0.25 tolerated(0.1) benign(0.072) TCGA-55-8510-01 19 17627041 17627041 G A PGLS Silent p.E116E 0.08 TCGA-55-8510-01 19 19135690 19135690 C T SUGP2 Silent p.L489L 0.12 TCGA-55-8510-01 19 31769688 31769688 T A TSHZ3 Silent p.T337T 0.36 TCGA-55-8510-01 19 40317324 40317324 T A DYRK1B Missense_Mutation p.I467F 0.30 deleterious(0.02) benign(0.412) TCGA-55-8510-01 19 42341322 42341322 C A LYPD4 Missense_Mutation p.E212D 0.48 deleterious(0) probably_damaging(0.999) TCGA-55-8510-01 19 43258737 43258737 C A PSG8 Missense_Mutation p.G331C 0.35 deleterious(0.02) probably_damaging(1) TCGA-55-8510-01 19 43439847 43439847 C T PSG7 Missense_Mutation p.E47K 0.31 tolerated(0.05) benign(0.063) TCGA-55-8510-01 19 46345518 46345518 C G SYMPK Missense_Mutation p.K359N 0.10 deleterious(0.01) possibly_damaging(0.802) TCGA-55-8510-01 19 49340629 49340629 C T PLEKHA4 Missense_Mutation p.D753N 0.38 tolerated_low_confidence(0.14) benign(0.002) TCGA-55-8510-01 19 4954431 4954431 G A UHRF1 RNA 0.12 TCGA-55-8510-01 19 50766619 50766619 G T MYH14 Missense_Mutation p.R879L 0.20 deleterious(0) probably_damaging(0.998) TCGA-55-8510-01 19 50766620 50766620 G T MYH14 Silent p.R879R 0.20 TCGA-55-8510-01 19 53855009 53855009 G T ZNF845 Missense_Mutation p.D361Y 0.18 deleterious(0) probably_damaging(0.961) TCGA-55-8510-01 19 54844917 54844917 T A LILRA4 Missense_Mutation p.R476W 0.21 deleterious(0) benign(0.001) TCGA-55-8510-01 19 55142976 55142976 G T LILRB1 Missense_Mutation p.W32C 0.34 deleterious(0) probably_damaging(0.951) TCGA-55-8510-01 19 55143941 55143941 G T LILRB1 Missense_Mutation p.V230L 0.38 deleterious(0) benign(0.02) TCGA-55-8510-01 19 55220425 55220425 C G AC098784.2 3'Flank 0.40 TCGA-55-8510-01 19 55669072 55669072 C A TNNI3 5'UTR 0.38 TCGA-55-8510-01 19 55713565 55713565 C A PTPRH Missense_Mutation p.G338C 0.30 probably_damaging(0.996) TCGA-55-8510-01 19 56156064 56156064 C T ZNF581 Nonsense_Mutation p.Q43* 0.13 TCGA-55-8510-01 19 5727349 5727349 A T CATSPERD Missense_Mutation p.Y66F 0.08 tolerated(0.08) probably_damaging(0.923) TCGA-55-8510-01 19 9090479 9090479 C A MUC16 Nonsense_Mutation p.G446* 0.30 TCGA-55-8510-01 19 9204067 9204067 C T OR1M1 Silent p.I49I 0.09 TCGA-55-8510-01 19 9361881 9361881 G A OR7E24 Silent p.L54L 0.13 TCGA-55-8510-01 1 100598311 100598311 C T SASS6 Silent p.E20E 0.06 TCGA-55-8510-01 1 101005398 101005398 C A GPR88 Silent p.V292V 0.31 TCGA-55-8510-01 1 10460608 10460608 G T PGD Silent p.V81V 0.18 TCGA-55-8510-01 1 1179636 1179636 G - FAM132A Frame_Shift_Del p.P105Qfs*8 0.15 TCGA-55-8510-01 1 148932819 148932819 G T RP11-14N7.2 RNA 0.06 TCGA-55-8510-01 1 152058211 152058211 G A TCHHL1 Silent p.P649P 0.17 TCGA-55-8510-01 1 152059689 152059689 C A TCHHL1 Missense_Mutation p.V157L 0.20 tolerated(0.12) benign(0.059) TCGA-55-8510-01 1 152324100 152324100 G T FLG2 Silent p.A2054A 0.18 TCGA-55-8510-01 1 153043248 153043248 C A SPRR2B Missense_Mutation p.C23F 0.21 deleterious_low_confidence(0) unknown(0) TCGA-55-8510-01 1 154931835 154931835 C A PYGO2 Missense_Mutation p.R214L 0.09 tolerated(0.08) possibly_damaging(0.726) TCGA-55-8510-01 1 155006185 155006185 G A DCST2 5'UTR 0.21 TCGA-55-8510-01 1 160722919 160722919 C G SLAMF7 Silent p.L320L 0.27 TCGA-55-8510-01 1 162688905 162688905 T A DDR2 Missense_Mutation p.L18M 0.19 tolerated(0.22) unknown(0) TCGA-55-8510-01 1 168282209 168282209 G A TBX19 Missense_Mutation p.G439E 0.22 deleterious_low_confidence(0.01) unknown(0) TCGA-55-8510-01 1 176525287 176525287 G T PAPPA2 5'UTR 0.32 TCGA-55-8510-01 1 186099742 186099743 CC - HMCN1 Frame_Shift_Del p.Q4382Vfs*9 0.19 TCGA-55-8510-01 1 196295871 196295871 G C KCNT2 Missense_Mutation p.P751R 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-8510-01 1 197026415 197026415 C A F13B Splice_Site p.X329_splice 0.22 TCGA-55-8510-01 1 197896830 197896830 C T LHX9 Silent p.T281T 0.34 TCGA-55-8510-01 1 207679402 207679402 G T CR1 Missense_Mutation p.W92L 0.15 deleterious(0) probably_damaging(1) TCGA-55-8510-01 1 221057701 221057701 T G HLX Silent p.A374A 0.12 TCGA-55-8510-01 1 224488275 224488275 C A NVL Nonsense_Mutation p.E351* 0.38 TCGA-55-8510-01 1 228525812 228525812 G C OBSCN Missense_Mutation p.W6613C 0.31 probably_damaging(0.999) TCGA-55-8510-01 1 22974096 22974096 C A C1QC Silent p.G186G 0.12 TCGA-55-8510-01 1 235826359 235826359 C A LYST Missense_Mutation p.G3763C 0.13 tolerated(0.13) probably_damaging(1) TCGA-55-8510-01 1 236208816 236208816 C G NID1 Missense_Mutation p.K231N 0.07 tolerated(0.08) benign(0.005) TCGA-55-8510-01 1 237664096 237664096 C A RYR2 Silent p.A763A 0.22 TCGA-55-8510-01 1 237947090 237947090 G T RYR2 Missense_Mutation p.L4026F 0.20 probably_damaging(0.969) TCGA-55-8510-01 1 240990402 240990402 C A RGS7 Missense_Mutation p.R227L 0.09 tolerated(0.05) benign(0.318) TCGA-55-8510-01 1 247752389 247752389 C G OR2G2 Missense_Mutation p.T243S 0.18 deleterious(0) probably_damaging(0.99) TCGA-55-8510-01 1 248525347 248525347 C A OR2T4 Nonsense_Mutation p.Y155* 0.17 TCGA-55-8510-01 1 248845369 248845369 G T OR14I1 Silent p.S79S 0.31 TCGA-55-8510-01 1 26751830 26751830 G A LIN28A Missense_Mutation p.E89K 0.18 deleterious(0.01) benign(0.115) TCGA-55-8510-01 1 31188898 31188898 C A MATN1 Silent p.G355G 0.10 TCGA-55-8510-01 1 37291324 37291324 C A GRIK3 Missense_Mutation p.R545L 0.13 deleterious(0) probably_damaging(0.925) TCGA-55-8510-01 1 39341093 39341093 G T GJA9 Missense_Mutation p.N226K 0.12 deleterious(0) possibly_damaging(0.657) TCGA-55-8510-01 1 44804865 44804865 T G ERI3 Missense_Mutation p.E114A 0.12 deleterious(0.04) benign(0.007) TCGA-55-8510-01 1 62920997 62920997 C T DOCK7 3'UTR 0.18 TCGA-55-8510-01 1 75039073 75039073 G A C1orf173 Missense_Mutation p.A774V 0.20 tolerated(0.08) possibly_damaging(0.481) TCGA-55-8510-01 1 86896581 86896581 G T CLCA2 Missense_Mutation p.W171L 0.19 deleterious(0) probably_damaging(1) TCGA-55-8510-01 1 99753637 99753637 T A LPPR4 Silent p.I113I 0.25 TCGA-55-8510-01 20 17434568 17434568 G C PCSK2 Missense_Mutation p.S356T 0.18 deleterious(0) probably_damaging(0.995) TCGA-55-8510-01 20 23016580 23016580 G C SSTR4 Missense_Mutation p.A154P 0.06 deleterious(0) probably_damaging(0.971) TCGA-55-8510-01 20 31671491 31671491 C A BPIFB4 Missense_Mutation p.T163N 0.28 deleterious_low_confidence(0.01) benign(0.322) TCGA-55-8510-01 20 33874997 33874997 G T FAM83C Missense_Mutation p.P529T 0.21 deleterious_low_confidence(0.01) benign(0.118) TCGA-55-8510-01 20 35545233 35545233 C A SAMHD1 Missense_Mutation p.R318S 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-8510-01 20 3672676 3672676 C T SIGLEC1 Missense_Mutation p.V1402I 0.10 tolerated(0.36) benign(0.074) TCGA-55-8510-01 20 3680084 3680084 C A SIGLEC1 Silent p.P517P 0.37 TCGA-55-8510-01 20 42683007 42683007 G A TOX2 Silent p.K240K 0.09 TCGA-55-8510-01 20 43058341 43058341 C A HNF4A 3'UTR 0.11 TCGA-55-8510-01 20 5283045 5283045 G T PROKR2 Silent p.R266R 0.27 TCGA-55-8510-01 20 57605429 57605429 C A ATP5E Nonsense_Mutation p.E30* 0.11 TCGA-55-8510-01 20 57766805 57766805 G C ZNF831 Missense_Mutation p.R244T 0.18 tolerated(0.39) benign(0.401) TCGA-55-8510-01 20 57766928 57766928 T C ZNF831 Missense_Mutation p.M285T 0.29 tolerated(0.8) benign(0) TCGA-55-8510-01 20 62366093 62366093 G T ZGPAT Missense_Mutation p.S323I 0.21 deleterious(0) possibly_damaging(0.655) TCGA-55-8510-01 20 7964454 7964454 T C TMX4 Silent p.L222L 0.06 TCGA-55-8510-01 20 9459713 9459713 C A PLCB4 3'UTR 0.20 TCGA-55-8510-01 20 9496233 9496233 T C LAMP5 Silent p.F66F 0.10 TCGA-55-8510-01 21 30255348 30255348 A C N6AMT1 Silent p.S60S 0.35 TCGA-55-8510-01 21 35169790 35169790 G T ITSN1 Missense_Mutation p.S687I 0.23 tolerated(0.23) benign(0.009) TCGA-55-8510-01 21 43955581 43955581 G C SLC37A1 Splice_Site p.X91_splice 0.09 TCGA-55-8510-01 22 26422733 26422733 G T MYO18B Missense_Mutation p.G2265C 0.29 deleterious(0) probably_damaging(0.971) TCGA-55-8510-01 22 38165044 38165044 G A TRIOBP Silent p.V2195V 0.22 TCGA-55-8510-01 22 42971967 42971967 C A SERHL2 3'Flank 0.26 TCGA-55-8510-01 22 47108119 47108119 C G CERK Missense_Mutation p.E151Q 0.08 tolerated(0.07) benign(0.14) TCGA-55-8510-01 2 103095467 103095467 C A SLC9A4 Silent p.G142G 0.21 TCGA-55-8510-01 2 131356238 131356238 G T CFC1 Missense_Mutation p.P75H 0.08 deleterious(0) probably_damaging(0.979) TCGA-55-8510-01 2 131521418 131521418 G T AMER3 Silent p.G591G 0.19 TCGA-55-8510-01 2 141474386 141474386 C A LRP1B Splice_Site p.X1920_splice 0.13 TCGA-55-8510-01 2 152107393 152107393 C A RBM43 3'UTR 0.21 TCGA-55-8510-01 2 152484188 152484188 C A NEB Missense_Mutation p.S3331I 0.08 possibly_damaging(0.891) TCGA-55-8510-01 2 159490614 159490614 C T PKP4 Nonsense_Mutation p.Q459* 0.11 TCGA-55-8510-01 2 162279889 162279889 C T TBR1 Silent p.T400T 0.13 TCGA-55-8510-01 2 179248840 179248840 A T OSBPL6 Silent p.P675P 0.20 TCGA-55-8510-01 2 192815005 192815005 C A TMEFF2 3'UTR 0.19 TCGA-55-8510-01 2 202572615 202572615 G A ALS2 Silent p.S1460S 0.16 TCGA-55-8510-01 2 211456682 211456682 C A CPS1 Missense_Mutation p.Q365K 0.28 tolerated(0.23) benign(0.006) TCGA-55-8510-01 2 21231778 21231778 G T APOB Missense_Mutation p.N2654K 0.18 possibly_damaging(0.617) TCGA-55-8510-01 2 212566821 212566821 T A ERBB4 Missense_Mutation p.S454C 0.16 deleterious(0) probably_damaging(0.993) TCGA-55-8510-01 2 238277462 238277462 C A COL6A3 Silent p.L1548L 0.09 TCGA-55-8510-01 2 239353045 239353045 G T ASB1 Missense_Mutation p.R186L 0.18 tolerated(0.13) probably_damaging(1) TCGA-55-8510-01 2 240982119 240982119 G T PRR21 Missense_Mutation p.P94Q 0.23 tolerated_low_confidence(0.07) unknown(0) TCGA-55-8510-01 2 27353609 27353609 C A ABHD1 Missense_Mutation p.S405R 0.17 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-55-8510-01 2 29294021 29294021 G T C2orf71 Missense_Mutation p.P1036H 0.17 deleterious(0) probably_damaging(0.939) TCGA-55-8510-01 2 32445541 32445541 G T SLC30A6 Missense_Mutation p.S422I 0.15 deleterious_low_confidence(0) possibly_damaging(0.787) TCGA-55-8510-01 2 40342419 40342419 C A SLC8A1 Missense_Mutation p.A966S 0.21 tolerated(0.27) benign(0.175) TCGA-55-8510-01 2 43927656 43927656 C T PLEKHH2 Missense_Mutation p.P520L 0.17 tolerated(0.1) benign(0.005) TCGA-55-8510-01 2 44201883 44201883 C A LRPPRC Silent p.V293V 0.19 TCGA-55-8510-01 2 46987117 46987117 G T SOCS5 Missense_Mutation p.S483I 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-55-8510-01 2 49295429 49295429 C G FSHR Silent p.L51L 0.16 TCGA-55-8510-01 2 54482785 54482785 G T TSPYL6 Silent p.G168G 0.13 TCGA-55-8510-01 2 89545008 89545008 C A IGKV2-30 Missense_Mutation p.W14C 0.17 deleterious(0.05) benign(0.207) TCGA-55-8510-01 2 90044140 90044140 G A IGKV2D-24 Missense_Mutation p.D21N 0.19 deleterious(0.03) benign(0.166) TCGA-55-8510-01 2 9572793 9572793 C T CPSF3 Silent p.F165F 0.12 TCGA-55-8510-01 3 102196301 102196301 C A ZPLD1 Missense_Mutation p.P379T 0.11 tolerated(0.07) benign(0.002) TCGA-55-8510-01 3 128969540 128969540 C A COPG1 Missense_Mutation p.P18Q 0.15 deleterious(0.05) possibly_damaging(0.57) TCGA-55-8510-01 3 130095281 130095281 G A COL6A5 Missense_Mutation p.R90K 0.12 tolerated(0.93) benign(0.009) TCGA-55-8510-01 3 149290690 149290690 C A WWTR1 Missense_Mutation p.V177L 0.25 tolerated(0.27) benign(0.005) TCGA-55-8510-01 3 151163060 151163060 C A IGSF10 Missense_Mutation p.W1570L 0.11 tolerated(0.17) benign(0.006) TCGA-55-8510-01 3 170016797 170016797 G T PRKCI Missense_Mutation p.Q534H 0.20 deleterious(0.01) benign(0.055) TCGA-55-8510-01 3 175473137 175473137 T A NAALADL2 Missense_Mutation p.M707K 0.24 deleterious(0) probably_damaging(0.972) TCGA-55-8510-01 3 183776358 183776358 G C HTR3C Missense_Mutation p.D235H 0.20 deleterious(0) probably_damaging(0.951) TCGA-55-8510-01 3 186965104 186965104 G T MASP1 Intron 0.14 TCGA-55-8510-01 3 30686267 30686267 C T TGFBR2 Silent p.N66N 0.20 TCGA-55-8510-01 3 40251560 40251560 G A MYRIP Silent p.Q627Q 0.20 TCGA-55-8510-01 3 49841819 49841819 G C FAM212A Missense_Mutation p.R88T 0.09 tolerated(0.49) possibly_damaging(0.463) TCGA-55-8510-01 3 86115850 86115850 G T CADM2 Missense_Mutation p.D411Y 0.37 deleterious(0) probably_damaging(0.997) TCGA-55-8510-01 4 109767329 109767329 C A COL25A1 Missense_Mutation p.G494V 0.09 deleterious(0) probably_damaging(1) TCGA-55-8510-01 4 111412258 111412258 C T ENPEP Silent p.L286L 0.17 TCGA-55-8510-01 4 114257896 114257896 G T ANK2 Missense_Mutation p.G1252V 0.11 probably_damaging(0.995) TCGA-55-8510-01 4 123336763 123336763 C A ADAD1 Silent p.I493I 0.11 TCGA-55-8510-01 4 124323206 124323206 A G SPRY1 Missense_Mutation p.I154V 0.11 tolerated(0.78) benign(0.001) TCGA-55-8510-01 4 143226669 143226669 T C INPP4B Missense_Mutation p.S149G 0.21 deleterious(0.03) benign(0.397) TCGA-55-8510-01 4 166910553 166910553 G T TLL1 Missense_Mutation p.A64S 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-8510-01 4 30725013 30725013 C A PCDH7 Missense_Mutation p.P657T 0.27 tolerated(0.85) possibly_damaging(0.754) TCGA-55-8510-01 4 39408733 39408733 G C KLB Missense_Mutation p.G55A 0.10 deleterious(0) possibly_damaging(0.786) TCGA-55-8510-01 4 46976307 46976307 T A GABRA4 Missense_Mutation p.L221F 0.14 deleterious(0.01) probably_damaging(1) TCGA-55-8510-01 4 47408777 47408777 C A GABRB1 Missense_Mutation p.A305E 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-55-8510-01 4 66356335 66356335 C A EPHA5 Missense_Mutation p.D388Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-8510-01 4 68777175 68777175 C A TMPRSS11A Missense_Mutation p.W384L 0.25 deleterious(0) probably_damaging(1) TCGA-55-8510-01 4 69811098 69811098 A T UGT2A3 Missense_Mutation p.F264I 0.20 deleterious(0.01) probably_damaging(0.924) TCGA-55-8510-01 4 70460316 70460316 C T UGT2A1 Missense_Mutation p.A561T 0.13 deleterious(0.01) benign(0.4) TCGA-55-8510-01 4 71255432 71255432 C A SMR3B Missense_Mutation p.A36D 0.26 deleterious_low_confidence(0.05) unknown(0) TCGA-55-8510-01 4 84376611 84376611 C A HELQ Missense_Mutation p.G79V 0.23 tolerated_low_confidence(0.26) benign(0) TCGA-55-8510-01 5 112173973 112173973 G T APC Silent p.V894V 0.20 TCGA-55-8510-01 5 112174935 112174935 G T APC Missense_Mutation p.S1215I 0.24 benign(0.128) TCGA-55-8510-01 5 131055009 131055009 C A FNIP1 Splice_Site p.X152_splice 0.25 TCGA-55-8510-01 5 131892933 131892933 C G RAD50 5'UTR 0.08 TCGA-55-8510-01 5 138994493 138994493 C A UBE2D2 Silent p.G82G 0.18 TCGA-55-8510-01 5 140559586 140559586 C A PCDHB8 Silent p.A657A 0.22 TCGA-55-8510-01 5 140744773 140744773 C A PCDHGA5 Missense_Mutation p.F292L 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-8510-01 5 140763359 140763359 C A PCDHGA7 Missense_Mutation p.T298K 0.27 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-55-8510-01 5 140800903 140800903 C A PCDHGA11 Missense_Mutation p.P37T 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.764) TCGA-55-8510-01 5 150922516 150922516 G T FAT2 Nonsense_Mutation p.Y2724* 0.23 TCGA-55-8510-01 5 151771933 151771933 T C NMUR2 Missense_Mutation p.Q356R 0.29 tolerated(0.44) benign(0.003) TCGA-55-8510-01 5 156592893 156592893 C A FAM71B Missense_Mutation p.C96F 0.31 deleterious(0.01) benign(0.265) TCGA-55-8510-01 5 163251 163251 G C PLEKHG4B Missense_Mutation p.D666H 0.11 deleterious(0.02) possibly_damaging(0.689) TCGA-55-8510-01 5 176301048 176301048 C A UNC5A Silent p.V322V 0.12 TCGA-55-8510-01 5 176812786 176812786 C T SLC34A1 Missense_Mutation p.P15L 0.22 deleterious_low_confidence(0.03) possibly_damaging(0.804) TCGA-55-8510-01 5 24491719 24491719 C G CDH10 Missense_Mutation p.L614F 0.28 deleterious(0.02) probably_damaging(0.969) TCGA-55-8510-01 5 31267570 31267570 G T CDH6 5'UTR 0.36 TCGA-55-8510-01 5 38489197 38489197 A G LIFR Missense_Mutation p.M773T 0.17 tolerated(1) benign(0.001) TCGA-55-8510-01 5 45645621 45645621 G T HCN1 Missense_Mutation p.T172K 0.15 deleterious(0.01) possibly_damaging(0.447) TCGA-55-8510-01 5 66462681 66462681 G T MAST4 Silent p.G2558G 0.27 TCGA-55-8510-01 5 80083469 80083469 G A MSH3 Missense_Mutation p.A841T 0.04 deleterious(0.01) possibly_damaging(0.852) TCGA-55-8510-01 6 106727644 106727644 G A ATG5 Missense_Mutation p.H124Y 0.17 tolerated(0.16) probably_damaging(0.959) TCGA-55-8510-01 6 136468596 136468596 G A PDE7B Missense_Mutation p.A92T 0.33 tolerated(0.64) benign(0.008) TCGA-55-8510-01 6 144508470 144508470 G T STX11 Nonsense_Mutation p.E236* 0.17 TCGA-55-8510-01 6 26393397 26393398 GC T BTN2A2 3'UTR 0.11 TCGA-55-8510-01 6 27115290 27115290 A C HIST1H2AH Missense_Mutation p.K128T 0.24 deleterious_low_confidence(0) benign(0.143) TCGA-55-8510-01 6 29429912 29429912 G T OR2H1 Silent p.V122V 0.06 TCGA-55-8510-01 6 30675381 30675381 C A MDC1 Missense_Mutation p.G992V 0.20 deleterious(0) probably_damaging(0.998) TCGA-55-8510-01 6 31615436 31615436 C G BAG6 Missense_Mutation p.Q246H 0.25 tolerated(0.09) probably_damaging(0.984) TCGA-55-8510-01 6 31910804 31910804 A C CFB Missense_Mutation p.K277Q 0.04 deleterious(0) benign(0.079) TCGA-55-8510-01 6 31939185 31939185 C T DXO Missense_Mutation p.D90N 0.11 tolerated(0.15) benign(0.083) TCGA-55-8510-01 6 36652159 36652159 G C CDKN1A Missense_Mutation p.R94P 0.16 tolerated(0.18) possibly_damaging(0.62) TCGA-55-8510-01 6 43109462 43109462 C T PTK7 Missense_Mutation p.R567W 0.07 deleterious(0.01) probably_damaging(0.948) TCGA-55-8510-01 6 46293214 46293214 C A RCAN2 Intron 0.13 TCGA-55-8510-01 6 47976516 47976516 A C PTCHD4 Missense_Mutation p.M254R 0.29 deleterious(0) probably_damaging(0.929) TCGA-55-8510-01 6 49754693 49754693 C A PGK2 Missense_Mutation p.V70F 0.33 deleterious(0.05) benign(0.244) TCGA-55-8510-01 6 50681764 50681764 C T TFAP2D 5'UTR 0.07 TCGA-55-8510-01 6 76063367 76063367 C T FILIP1 Missense_Mutation p.E173K 0.23 deleterious(0) probably_damaging(1) TCGA-55-8510-01 6 87725404 87725404 C A HTR1E Missense_Mutation p.L118M 0.29 deleterious(0) probably_damaging(0.996) TCGA-55-8510-01 6 90605651 90605651 C A GJA10 Silent p.I488I 0.30 TCGA-55-8510-01 7 103234221 103234221 G T RELN Missense_Mutation p.P1274T 0.19 tolerated(0.12) probably_damaging(0.995) TCGA-55-8510-01 7 107188764 107188764 C A COG5 Missense_Mutation p.M133I 0.19 tolerated(0.22) benign(0.235) TCGA-55-8510-01 7 107745023 107745023 C G LAMB4 Silent p.P304P 0.16 TCGA-55-8510-01 7 114066584 114066584 G A FOXP2 Silent p.A6A 0.07 TCGA-55-8510-01 7 128415664 128415664 G T OPN1SW Missense_Mutation p.R61S 0.19 deleterious(0.01) benign(0.255) TCGA-55-8510-01 7 129663356 129663356 T A ZC3HC1 Missense_Mutation p.S410C 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-55-8510-01 7 141721430 141721430 C G MGAM Missense_Mutation p.H201Q 0.25 tolerated(0.11) possibly_damaging(0.461) TCGA-55-8510-01 7 141833943 141833943 C A RP11-1220K2.2 Silent p.T246T 0.19 TCGA-55-8510-01 7 143175320 143175320 T A TAS2R41 Missense_Mutation p.F119I 0.12 deleterious(0) probably_damaging(0.994) TCGA-55-8510-01 7 144096266 144096266 G T NOBOX Missense_Mutation p.P416T 0.29 deleterious(0.04) possibly_damaging(0.854) TCGA-55-8510-01 7 14613853 14613853 T A DGKB Missense_Mutation p.Y586F 0.08 deleterious(0) probably_damaging(0.996) TCGA-55-8510-01 7 146805379 146805379 C G CNTNAP2 Missense_Mutation p.Q231E 0.26 tolerated(0.05) possibly_damaging(0.688) TCGA-55-8510-01 7 14789761 14789761 G C DGKB Intron 0.13 TCGA-55-8510-01 7 1484460 1484460 C G MICALL2 Missense_Mutation p.A416P 0.12 deleterious(0) probably_damaging(0.986) TCGA-55-8510-01 7 149427528 149427528 C T KRBA1 Silent p.R671R 0.20 TCGA-55-8510-01 7 150557663 150557663 G T AOC1 Missense_Mutation p.W644L 0.24 deleterious(0) probably_damaging(0.999) TCGA-55-8510-01 7 27181620 27181620 A T HOXA5 Missense_Mutation p.F216Y 0.26 tolerated(0.07) probably_damaging(0.999) TCGA-55-8510-01 7 2979403 2979403 C T CARD11 Missense_Mutation p.E282K 0.10 deleterious(0) possibly_damaging(0.777) TCGA-55-8510-01 7 31682999 31682999 G T CCDC129 Missense_Mutation p.G698V 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-55-8510-01 7 31862692 31862692 G T PDE1C Missense_Mutation p.P586H 0.29 tolerated(0.16) possibly_damaging(0.784) TCGA-55-8510-01 7 42005301 42005301 G - GLI3 Frame_Shift_Del p.H1124Tfs*82 0.09 TCGA-55-8510-01 7 43647877 43647877 G C STK17A Missense_Mutation p.D148H 0.09 tolerated(0.08) possibly_damaging(0.873) TCGA-55-8510-01 7 44801481 44801481 A G ZMIZ2 Missense_Mutation p.I525V 0.19 tolerated(0.07) benign(0.268) TCGA-55-8510-01 7 62752158 62752158 G T ZNF733P RNA 0.13 TCGA-55-8510-01 7 81335720 81335720 C A HGF Missense_Mutation p.W547L 0.15 tolerated(0.17) probably_damaging(1) TCGA-55-8510-01 7 82387993 82387993 C A PCLO Missense_Mutation p.K5109N 0.21 unknown(0) TCGA-55-8510-01 7 83590877 83590877 A G SEMA3A Missense_Mutation p.L709P 0.08 deleterious(0) probably_damaging(0.999) TCGA-55-8510-01 7 91763632 91763632 C A CYP51A1 Missense_Mutation p.G16V 0.25 tolerated(0.16) unknown(0) TCGA-55-8510-01 7 92979283 92979283 G T CCDC132 Missense_Mutation p.V801L 0.15 deleterious(0.01) possibly_damaging(0.591) TCGA-55-8510-01 7 95457399 95457399 G T DYNC1I1 Silent p.V132V 0.17 TCGA-55-8510-01 7 98508016 98508016 G T TRRAP Missense_Mutation p.G563V 0.17 possibly_damaging(0.688) TCGA-55-8510-01 7 99764167 99764167 G T GAL3ST4 Silent p.P129P 0.09 TCGA-55-8510-01 8 101018337 101018337 C A RGS22 Missense_Mutation p.V788L 0.20 deleterious(0) possibly_damaging(0.851) TCGA-55-8510-01 8 113668523 113668523 G T CSMD3 Missense_Mutation p.P955Q 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-55-8510-01 8 133807010 133807010 G C PHF20L1 Missense_Mutation p.R96P 0.10 tolerated(0.27) probably_damaging(0.999) TCGA-55-8510-01 8 144590044 144590044 A G ZC3H3 Silent p.T529T 0.10 TCGA-55-8510-01 8 20004768 20004768 C A SLC18A1 Splice_Site p.X488_splice 0.14 TCGA-55-8510-01 8 59059606 59059606 G T FAM110B Missense_Mutation p.D273Y 0.08 deleterious(0) probably_damaging(0.997) TCGA-55-8510-01 8 71496019 71496019 C A TRAM1 Silent p.L252L 0.13 TCGA-55-8510-01 8 90777628 90777628 C T RIPK2 Silent p.A129A 0.17 TCGA-55-8510-01 8 97797543 97797543 G T CPQ Missense_Mutation p.G140W 0.08 deleterious(0) probably_damaging(0.986) TCGA-55-8510-01 8 97797544 97797544 G T CPQ Missense_Mutation p.G140V 0.08 deleterious(0) possibly_damaging(0.842) TCGA-55-8510-01 9 119738990 119738990 G C ASTN2 Missense_Mutation p.Q505E 0.26 tolerated(0.21) unknown(0) TCGA-55-8510-01 9 120476977 120476977 C A TLR4 3'UTR 0.29 TCGA-55-8510-01 9 132084840 132084840 G T C9orf106 RNA 0.27 TCGA-55-8510-01 9 136508552 136508552 C T DBH Silent p.T254T 0.22 TCGA-55-8510-01 9 139733732 139733732 C A RABL6 Missense_Mutation p.P519T 0.43 tolerated_low_confidence(0.06) unknown(0) TCGA-55-8510-01 9 40773136 40773136 G T ZNF658 Silent p.P713P 0.11 TCGA-55-8510-01 9 43625272 43625272 G T SPATA31A6 Missense_Mutation p.H1139N 0.26 tolerated(0.33) benign(0.137) TCGA-55-8510-01 9 72723375 72723376 - A MAMDC2 Frame_Shift_Ins p.N134Kfs*26 0.19 TCGA-55-8510-01 X 101381936 101381936 G T TCEAL2 Missense_Mutation p.G45V 0.15 tolerated(0.22) benign(0) TCGA-55-8510-01 X 11197459 11197459 G T ARHGAP6 Silent p.L481L 0.28 TCGA-55-8510-01 X 112022377 112022377 T A AMOT Missense_Mutation p.Q1002L 0.10 unknown(0) TCGA-55-8510-01 X 118717385 118717385 C A UBE2A 3'UTR 0.31 TCGA-55-8510-01 X 118975149 118975149 T A UPF3B Missense_Mutation p.R233W 0.17 deleterious(0) probably_damaging(0.975) TCGA-55-8510-01 X 119077528 119077528 G T NKAP Missense_Mutation p.A14D 0.09 tolerated(0.2) probably_damaging(0.942) TCGA-55-8510-01 X 119746256 119746256 A C MCTS1 3'Flank 0.17 TCGA-55-8510-01 X 122799519 122799519 G T THOC2 Missense_Mutation p.R454S 0.05 deleterious(0) probably_damaging(0.999) TCGA-55-8510-01 X 125299905 125299905 C A DCAF12L2 Translation_Start_Site p.M1? 0.27 deleterious_low_confidence(0.02) benign(0.014) TCGA-55-8510-01 X 12735831 12735831 C A FRMPD4 Silent p.G962G 0.23 TCGA-55-8510-01 X 12736196 12736196 C A FRMPD4 Missense_Mutation p.T1084N 0.26 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-55-8510-01 X 128962956 128962956 C A ZDHHC9 Splice_Site p.X110_splice 0.10 TCGA-55-8510-01 X 130218976 130218976 T C ARHGAP36 Missense_Mutation p.F298S 0.20 deleterious(0) probably_damaging(0.999) TCGA-55-8510-01 X 131212990 131212990 T A FRMD7 Missense_Mutation p.E352V 0.16 deleterious(0.03) possibly_damaging(0.701) TCGA-55-8510-01 X 1317534 1317534 G T CRLF2 Silent p.A177A 0.24 TCGA-55-8510-01 X 134156527 134156527 G C FAM127C 5'UTR 0.09 TCGA-55-8510-01 X 135427667 135427667 C A GPR112 Missense_Mutation p.S601Y 0.20 deleterious(0) benign(0.271) TCGA-55-8510-01 X 135432283 135432283 C G GPR112 Missense_Mutation p.L2140V 0.25 tolerated(0.2) benign(0.002) TCGA-55-8510-01 X 142716846 142716846 C A SLITRK4 Missense_Mutation p.Q693H 0.12 tolerated(1) benign(0) TCGA-55-8510-01 X 147024827 147024827 C A FMR1 Silent p.R484R 0.16 TCGA-55-8510-01 X 153133494 153133494 T A L1CAM Missense_Mutation p.E596V 0.22 tolerated(0.15) benign(0.201) TCGA-55-8510-01 X 153585927 153585927 G T FLNA Missense_Mutation p.A1607D 0.11 deleterious(0) benign(0.024) TCGA-55-8510-01 X 154007575 154007575 G A MPP1 Silent p.Y426Y 0.13 TCGA-55-8510-01 X 154489936 154489936 C A RAB39B 3'UTR 0.21 TCGA-55-8510-01 X 2945415 2945415 G A ARSH Silent p.P366P 0.11 TCGA-55-8510-01 X 29973568 29973568 T A IL1RAPL1 Missense_Mutation p.D574E 0.26 deleterious(0.04) probably_damaging(0.978) TCGA-55-8510-01 X 53106004 53106004 C A GPR173 Silent p.A67A 0.08 TCGA-55-8510-01 X 53560323 53560323 G - HUWE1 Frame_Shift_Del p.H4358Tfs*105 0.13 TCGA-55-8510-01 X 54037583 54037584 CT A PHF8 Frame_Shift_Del p.K342Ifs*17 0.12 TCGA-55-8510-01 X 55287035 55287035 C T PAGE3 Missense_Mutation p.R84H 0.17 tolerated(0.61) probably_damaging(0.954) TCGA-55-8510-01 X 57405083 57405083 G T FAAH2 Splice_Site p.X248_splice 0.21 TCGA-55-8510-01 X 63488310 63488310 C A MTMR8 3'UTR 0.13 TCGA-55-8510-01 X 67421506 67421506 T C OPHN1 Missense_Mutation p.E327G 0.10 deleterious(0) benign(0.166) TCGA-55-8510-01 X 69176904 69176904 G C EDA Missense_Mutation p.D142H 0.21 deleterious_low_confidence(0.02) unknown(0) TCGA-55-8510-01 X 72433769 72433769 C A NAP1L2 Missense_Mutation p.G187V 0.25 tolerated(0.2) benign(0.029) TCGA-55-8510-01 X 73045857 73045857 C A XIST RNA 0.19 TCGA-55-8510-01 X 73067574 73067574 G C XIST RNA 0.20 TCGA-55-8510-01 X 75397740 75397740 G T PBDC1 Missense_Mutation p.M233I 0.09 deleterious_low_confidence(0.03) benign(0.019) TCGA-55-8510-01 X 79991526 79991526 A T BRWD3 Missense_Mutation p.I292N 0.13 deleterious(0) possibly_damaging(0.774) TCGA-55-8510-01 X 83128148 83128148 C G CYLC1 Silent p.S144S 0.14 TCGA-55-8511-01 10 114298043 114298043 G A VTI1A Silent p.R127R 0.06 TCGA-55-8511-01 10 12071172 12071172 T A UPF2 Silent p.S239S 0.17 TCGA-55-8511-01 10 123842969 123842969 G A TACC2 Silent p.G318G 0.25 TCGA-55-8511-01 10 125447491 125447491 G T GPR26 Missense_Mutation p.V277L 0.15 deleterious(0.03) benign(0.285) TCGA-55-8511-01 10 15614364 15614364 T A ITGA8 Missense_Mutation p.H828L 0.20 tolerated(0.66) probably_damaging(0.938) TCGA-55-8511-01 10 26800825 26800825 A G APBB1IP Silent p.E227E 0.28 TCGA-55-8511-01 10 28250547 28250547 C G ARMC4 Missense_Mutation p.D446H 0.22 deleterious(0) probably_damaging(0.952) TCGA-55-8511-01 10 34400279 34400279 G C PARD3 Missense_Mutation p.Q1297E 0.23 tolerated_low_confidence(0.91) probably_damaging(0.974) TCGA-55-8511-01 10 46965720 46965720 G T SYT15 Missense_Mutation p.L273M 0.14 deleterious(0.02) probably_damaging(0.977) TCGA-55-8511-01 10 55943320 55943320 G T PCDH15 Missense_Mutation p.P492T 0.09 deleterious(0.02) possibly_damaging(0.705) TCGA-55-8511-01 10 61834508 61834508 C A ANK3 Missense_Mutation p.S2044I 0.15 benign(0.137) TCGA-55-8511-01 10 72492074 72492074 C A ADAMTS14 Silent p.G392G 0.16 TCGA-55-8511-01 10 87489351 87489351 C T GRID1 Silent p.E418E 0.16 TCGA-55-8511-01 10 89265181 89265181 G T MINPP1 Missense_Mutation p.S170I 0.21 deleterious(0.04) possibly_damaging(0.595) TCGA-55-8511-01 10 90491947 90491947 G T LIPK Missense_Mutation p.M145I 0.11 deleterious(0.03) probably_damaging(0.944) TCGA-55-8511-01 10 91514299 91514299 G A KIF20B Missense_Mutation p.D1418N 0.09 deleterious(0.04) possibly_damaging(0.897) TCGA-55-8511-01 10 95347055 95347055 G T FFAR4 Missense_Mutation p.D275Y 0.28 deleterious(0) probably_damaging(0.996) TCGA-55-8511-01 11 100999382 100999382 C A PGR Missense_Mutation p.W140C 0.21 deleterious_low_confidence(0) possibly_damaging(0.82) TCGA-55-8511-01 11 102933091 102933091 T C DCUN1D5 Silent p.S237S 0.20 TCGA-55-8511-01 11 103907408 103907408 C A DDI1 5'UTR 0.16 TCGA-55-8511-01 11 107518310 107518310 G - ELMOD1 Frame_Shift_Del p.G180Dfs*36 0.15 TCGA-55-8511-01 11 108381811 108381811 C A EXPH5 Missense_Mutation p.G1475C 0.17 tolerated(0.12) benign(0.021) TCGA-55-8511-01 11 109294920 109294920 C A C11orf87 Silent p.G187G 0.26 TCGA-55-8511-01 11 111420388 111420388 G T LAYN Silent p.V151V 0.20 TCGA-55-8511-01 11 111731269 111731269 C A ALG9 Splice_Site p.X18_splice 0.18 TCGA-55-8511-01 11 113610085 113610085 G C ZW10 Missense_Mutation p.P535A 0.16 deleterious(0) probably_damaging(1) TCGA-55-8511-01 11 114441989 114441989 C A NXPE4 Missense_Mutation p.G436C 0.21 deleterious(0) probably_damaging(1) TCGA-55-8511-01 11 1156592 1156592 C T MUC5AC Silent p.Y203Y 0.27 TCGA-55-8511-01 11 118527482 118527482 G T PHLDB1 Missense_Mutation p.W1361C 0.15 deleterious(0) probably_damaging(1) TCGA-55-8511-01 11 118629487 118629487 G A DDX6 Missense_Mutation p.S330F 0.17 deleterious(0) possibly_damaging(0.586) TCGA-55-8511-01 11 118942386 118942386 T A VPS11 Missense_Mutation p.S238R 0.16 deleterious(0) probably_damaging(0.923) TCGA-55-8511-01 11 119029342 119029342 G A ABCG4 Missense_Mutation p.D415N 0.05 tolerated(1) benign(0.001) TCGA-55-8511-01 11 123814426 123814426 T A OR6T1 Silent p.T40T 0.22 TCGA-55-8511-01 11 123847565 123847565 G T OR10S1 Silent p.S278S 0.12 TCGA-55-8511-01 11 123994449 123994449 G T VWA5A Nonsense_Mutation p.E368* 0.07 TCGA-55-8511-01 11 1271043 1271043 G A MUC5B Silent p.L4311L 0.04 TCGA-55-8511-01 11 1272834 1272834 G C MUC5B Silent p.V4908V 0.26 TCGA-55-8511-01 11 1642956 1642956 G T KRTAP5-4 Missense_Mutation p.S123Y 0.15 deleterious_low_confidence(0) unknown(0) TCGA-55-8511-01 11 1904770 1904770 G C LSP1 Missense_Mutation p.A288P 0.17 tolerated_low_confidence(0.07) benign(0.019) TCGA-55-8511-01 11 19954930 19954930 G T NAV2 Silent p.G403G 0.25 TCGA-55-8511-01 11 22360105 22360105 T G SLC17A6 Missense_Mutation p.L9W 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.832) TCGA-55-8511-01 11 22363264 22363264 G T SLC17A6 Missense_Mutation p.V93L 0.36 deleterious(0.02) possibly_damaging(0.826) TCGA-55-8511-01 11 24936020 24936020 A T LUZP2 Splice_Site p.X154_splice 0.28 TCGA-55-8511-01 11 30439177 30439177 G T MPPED2 Silent p.T180T 0.25 TCGA-55-8511-01 11 30914518 30914519 - A DCDC1 Frame_Shift_Ins p.M1640Ifs*23 0.19 TCGA-55-8511-01 11 40136104 40136104 G T LRRC4C Missense_Mutation p.P580H 0.23 tolerated_low_confidence(0.15) benign(0.428) TCGA-55-8511-01 11 43940668 43940668 G C ALKBH3 Silent p.A250A 0.25 TCGA-55-8511-01 11 4566861 4566861 G A OR52M1 Silent p.G147G 0.21 TCGA-55-8511-01 11 4566862 4566862 C G OR52M1 Missense_Mutation p.L148V 0.21 tolerated(0.07) possibly_damaging(0.73) TCGA-55-8511-01 11 49178269 49178269 C A FOLH1 Missense_Mutation p.W541C 0.22 tolerated(0.18) possibly_damaging(0.506) TCGA-55-8511-01 11 4936514 4936514 C A OR51G2 Missense_Mutation p.R127L 0.25 deleterious(0) possibly_damaging(0.495) TCGA-55-8511-01 11 49974765 49974765 C A OR4C13 Missense_Mutation p.P264H 0.24 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-55-8511-01 11 5173180 5173180 G C OR52A1 Missense_Mutation p.H140Q 0.20 tolerated(0.3) benign(0.002) TCGA-55-8511-01 11 55036790 55036790 G C TRIM48 Silent p.L217L 0.09 TCGA-55-8511-01 11 55322710 55322710 G T OR4C15 Missense_Mutation p.V310L 0.17 tolerated_low_confidence(0.12) benign(0.009) TCGA-55-8511-01 11 55339951 55339951 G T OR4C16 Silent p.T116T 0.20 TCGA-55-8511-01 11 56000196 56000196 C A OR5T2 Missense_Mutation p.A156S 0.21 tolerated(0.18) benign(0.391) TCGA-55-8511-01 11 56057630 56057630 G T OR8H1 Silent p.V303V 0.19 TCGA-55-8511-01 11 56086643 56086643 G T OR8K3 Missense_Mutation p.L287F 0.19 tolerated_low_confidence(0.06) benign(0.292) TCGA-55-8511-01 11 56113751 56113751 C A OR8K1 Nonsense_Mutation p.Y79* 0.19 TCGA-55-8511-01 11 56128026 56128026 G T OR8J1 Nonsense_Mutation p.G102* 0.17 TCGA-55-8511-01 11 561835 561835 G T RASSF7 Missense_Mutation p.G23W 0.14 deleterious(0) probably_damaging(1) TCGA-55-8511-01 11 56344766 56344766 C A OR5M10 Silent p.L144L 0.22 TCGA-55-8511-01 11 57982725 57982725 T C OR1S1 Missense_Mutation p.L170P 0.27 deleterious(0) probably_damaging(0.995) TCGA-55-8511-01 11 57996243 57996243 G T OR10Q1 Missense_Mutation p.F35L 0.26 tolerated(0.05) benign(0.076) TCGA-55-8511-01 11 58126242 58126242 A G OR5B17 Missense_Mutation p.F101L 0.21 tolerated_low_confidence(0.07) benign(0.079) TCGA-55-8511-01 11 59481018 59481018 G T OR10V1 Missense_Mutation p.Q101K 0.18 deleterious(0) probably_damaging(0.998) TCGA-55-8511-01 11 60165336 60165336 C T MS4A14 Silent p.I50I 0.21 TCGA-55-8511-01 11 60714179 60714179 T A SLC15A3 Missense_Mutation p.S225C 0.14 deleterious(0) possibly_damaging(0.907) TCGA-55-8511-01 11 66359867 66359867 C T CCDC87 Missense_Mutation p.C207Y 0.17 tolerated(0.2) benign(0.033) TCGA-55-8511-01 11 73933372 73933372 A G PPME1 Missense_Mutation p.R102G 0.15 tolerated(0.12) benign(0.216) TCGA-55-8511-01 11 75146615 75146615 G T GDPD5 Silent p.T585T 0.18 TCGA-55-8511-01 11 77830262 77830262 C A ALG8 Missense_Mutation p.G171V 0.22 deleterious(0) probably_damaging(0.986) TCGA-55-8511-01 11 89402668 89402668 C A FOLH1B RNA 0.17 TCGA-55-8511-01 11 95712545 95712546 - C MAML2 Frame_Shift_Ins p.A1013Gfs*6 0.15 TCGA-55-8511-01 12 10339055 10339055 T G TMEM52B Missense_Mutation p.C38W 0.11 deleterious(0) probably_damaging(0.998) TCGA-55-8511-01 12 104461837 104461837 T G HCFC2 Missense_Mutation p.F142C 0.25 deleterious(0) possibly_damaging(0.628) TCGA-55-8511-01 12 10572984 10572984 C A KLRC3 Missense_Mutation p.D56Y 0.25 deleterious(0.01) benign(0.16) TCGA-55-8511-01 12 118457469 118457469 C T RFC5 Missense_Mutation p.H55Y 0.23 deleterious(0.01) probably_damaging(0.947) TCGA-55-8511-01 12 120580413 120580413 C G GCN1L1 Missense_Mutation p.K1909N 0.20 probably_damaging(0.997) TCGA-55-8511-01 12 123480074 123480074 C A PITPNM2 Missense_Mutation p.R639L 0.11 tolerated(0.09) probably_damaging(0.994) TCGA-55-8511-01 12 124857084 124857084 T A NCOR2 Missense_Mutation p.Q764L 0.20 unknown(0) TCGA-55-8511-01 12 126135351 126135351 G T TMEM132B Missense_Mutation p.G584V 0.11 deleterious(0) possibly_damaging(0.906) TCGA-55-8511-01 12 130847582 130847582 G C PIWIL1 Silent p.R696R 0.18 TCGA-55-8511-01 12 133428310 133428310 G A CHFR Silent p.Y474Y 0.12 TCGA-55-8511-01 12 1965378 1965378 G A CACNA2D4 Missense_Mutation p.H676Y 0.05 tolerated(0.08) benign(0.028) TCGA-55-8511-01 12 24736692 24736692 G A LINC00477 RNA 0.26 TCGA-55-8511-01 12 24736748 24736748 C T LINC00477 RNA 0.26 TCGA-55-8511-01 12 26875473 26875473 T A ITPR2 Missense_Mutation p.S128C 0.31 deleterious(0) probably_damaging(0.999) TCGA-55-8511-01 12 28122412 28122412 C G PTHLH Missense_Mutation p.V6L 0.25 tolerated(1) benign(0.004) TCGA-55-8511-01 12 43945683 43945683 G A ADAMTS20 Silent p.L14L 0.18 TCGA-55-8511-01 12 46244457 46244457 C T ARID2 Missense_Mutation p.P851S 0.16 tolerated_low_confidence(0.22) benign(0.002) TCGA-55-8511-01 12 46245826 46245826 C G ARID2 Nonsense_Mutation p.S1307* 0.19 TCGA-55-8511-01 12 4737207 4737207 G A AKAP3 Silent p.T287T 0.19 TCGA-55-8511-01 12 54917192 54917192 C T NCKAP1L Silent p.H631H 0.24 TCGA-55-8511-01 12 59276808 59276808 T G LRIG3 Missense_Mutation p.L441F 0.21 tolerated(0.08) possibly_damaging(0.651) TCGA-55-8511-01 12 70931924 70931924 G T PTPRB Intron 0.25 TCGA-55-8511-01 12 80190603 80190603 G A PPP1R12A Missense_Mutation p.T807I 0.26 deleterious(0.03) possibly_damaging(0.864) TCGA-55-8511-01 12 85438587 85438587 G T LRRIQ1 Missense_Mutation p.K112N 0.21 deleterious(0) probably_damaging(0.999) TCGA-55-8511-01 12 9087776 9087776 G A PHC1 Silent p.P770P 0.18 TCGA-55-8511-01 13 103468781 103468781 A C BIVM-ERCC5 Missense_Mutation p.N133T 0.10 deleterious_low_confidence(0.03) possibly_damaging(0.859) TCGA-55-8511-01 13 103718724 103718724 A T SLC10A2 5'UTR 0.21 TCGA-55-8511-01 13 114322231 114322231 G T GRK1 Missense_Mutation p.W177L 0.24 deleterious(0.01) benign(0.378) TCGA-55-8511-01 13 21557766 21557766 C A LATS2 Silent p.L693L 0.18 TCGA-55-8511-01 13 23915638 23915638 C A SACS Missense_Mutation p.D793Y 0.11 probably_damaging(0.998) TCGA-55-8511-01 13 23928789 23928789 C A SACS Silent p.V654V 0.24 TCGA-55-8511-01 13 32376335 32376335 G A RXFP2 Silent p.L686L 0.25 TCGA-55-8511-01 13 67799985 67799985 T A PCDH9 Missense_Mutation p.N863I 0.18 deleterious(0) probably_damaging(0.974) TCGA-55-8511-01 13 70371066 70371066 C A KLHL1 Silent p.L481L 0.05 TCGA-55-8511-01 13 88328792 88328792 G T SLITRK5 Missense_Mutation p.Q383H 0.18 tolerated(0.49) benign(0.196) TCGA-55-8511-01 13 96439306 96439306 A T DNAJC3 Silent p.A418A 0.21 TCGA-55-8511-01 13 98666432 98666432 A T IPO5 Silent p.S781S 0.18 TCGA-55-8511-01 14 102916203 102916203 A T TECPR2 Missense_Mutation p.I1105L 0.33 tolerated(0.31) benign(0.003) TCGA-55-8511-01 14 105413182 105413182 T A AHNAK2 Missense_Mutation p.Q2869L 0.35 benign(0.343) TCGA-55-8511-01 14 105416596 105416596 A T AHNAK2 Missense_Mutation p.L1731H 0.04 probably_damaging(0.917) TCGA-55-8511-01 14 19553637 19553637 G T POTEG Missense_Mutation p.G74V 0.14 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-55-8511-01 14 20020026 20020026 G C POTEM Missense_Mutation p.C65W 0.05 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-55-8511-01 14 20404546 20404546 A C OR4K1 Missense_Mutation p.T241P 0.08 deleterious(0) possibly_damaging(0.891) TCGA-55-8511-01 14 21058855 21058855 C A RNASE12 Missense_Mutation p.V10L 0.04 tolerated(1) unknown(0) TCGA-55-8511-01 14 21109509 21109509 G C OR6S1 Missense_Mutation p.F114L 0.64 deleterious(0.01) benign(0.011) TCGA-55-8511-01 14 23897833 23897833 A T MYH7 Missense_Mutation p.L485Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-55-8511-01 14 34269658 34269658 C A NPAS3 Silent p.V715V 0.33 TCGA-55-8511-01 14 42355961 42355961 G T LRFN5 Missense_Mutation p.V45F 0.37 deleterious(0) probably_damaging(0.946) TCGA-55-8511-01 14 57858149 57858149 G T NAA30 Silent p.A158A 0.44 TCGA-55-8511-01 14 64468761 64468761 C T SYNE2 Missense_Mutation p.H1250Y 0.05 benign(0.005) TCGA-55-8511-01 14 74825694 74825694 G T VRTN 3'UTR 0.50 TCGA-55-8511-01 14 75329933 75329933 C A PROX2 Missense_Mutation p.G202V 0.31 tolerated(0.16) possibly_damaging(0.756) TCGA-55-8511-01 14 81421909 81421909 C A TSHR 5'UTR 0.22 TCGA-55-8511-01 14 86089089 86089089 T C FLRT2 Missense_Mutation p.W411R 0.32 tolerated(0.53) benign(0) TCGA-55-8511-01 14 86089090 86089090 G T FLRT2 Missense_Mutation p.W411L 0.32 tolerated(0.75) benign(0) TCGA-55-8511-01 14 88904587 88904587 A G SPATA7 Missense_Mutation p.I541V 0.06 tolerated(0.12) benign(0.068) TCGA-55-8511-01 14 95574290 95574290 C A DICER1 Silent p.R859R 0.07 TCGA-55-8511-01 15 101775442 101775446 CCATG AATC CHSY1 Frame_Shift_Del p.C219Wfs*7 0.11 TCGA-55-8511-01 15 25222052 25222052 G T SNRPN Missense_Mutation p.G99V 0.16 deleterious(0.04) possibly_damaging(0.625) TCGA-55-8511-01 15 25319260 25319260 T C SNORD116-9 3'Flank 0.18 TCGA-55-8511-01 15 25477442 25477442 C A SNORD115-33 3'Flank 0.16 TCGA-55-8511-01 15 28441363 28441363 G A HERC2 Missense_Mutation p.P2753L 0.15 probably_damaging(0.961) TCGA-55-8511-01 15 31266646 31266646 C G MTMR10 Missense_Mutation p.K115N 0.16 deleterious(0) probably_damaging(0.979) TCGA-55-8511-01 15 31355430 31355430 C A TRPM1 Missense_Mutation p.V303F 0.10 deleterious(0) probably_damaging(0.938) TCGA-55-8511-01 15 40661361 40661361 T A DISP2 Silent p.T1016T 0.21 TCGA-55-8511-01 15 42058273 42058273 G T MGA Missense_Mutation p.D2665Y 0.31 deleterious(0) possibly_damaging(0.806) TCGA-55-8511-01 15 43579653 43579653 G A TGM7 Silent p.I230I 0.24 TCGA-55-8511-01 15 45725224 45725224 G A C15orf48 3'UTR 0.23 TCGA-55-8511-01 15 49303936 49303936 G T SECISBP2L Missense_Mutation p.S619Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-55-8511-01 15 50190289 50190289 C A ATP8B4 Missense_Mutation p.A817S 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-55-8511-01 15 75692396 75692396 T G SIN3A Missense_Mutation p.E613D 0.22 deleterious(0) probably_damaging(0.999) TCGA-55-8511-01 15 79339325 79339325 C T RASGRF1 Missense_Mutation p.R214Q 0.16 deleterious(0) probably_damaging(0.945) TCGA-55-8511-01 15 79749961 79749961 G T KIAA1024 Missense_Mutation p.C491F 0.24 deleterious(0.04) benign(0.165) TCGA-55-8511-01 15 86806066 86806066 C A AGBL1 Missense_Mutation p.P297T 0.45 tolerated(0.15) benign(0.1) TCGA-55-8511-01 16 11375028 11375028 C T PRM1 Missense_Mutation p.R23H 0.04 unknown(0) TCGA-55-8511-01 16 14345841 14345841 G T MKL2 Silent p.P792P 0.12 TCGA-55-8511-01 16 17232375 17232375 G T XYLT1 Missense_Mutation p.T534K 0.12 deleterious(0) probably_damaging(0.966) TCGA-55-8511-01 16 19883427 19883427 C A GPRC5B Missense_Mutation p.W247C 0.10 deleterious(0) probably_damaging(1) TCGA-55-8511-01 16 20432667 20432667 C A ACSM5 Silent p.P237P 0.17 TCGA-55-8511-01 16 23847559 23847559 C A PRKCB Silent p.A21A 0.15 TCGA-55-8511-01 16 27472667 27472667 G A GTF3C1 3'UTR 0.25 TCGA-55-8511-01 16 27476020 27476020 G T GTF3C1 Missense_Mutation p.D1831E 0.21 tolerated(0.18) benign(0.006) TCGA-55-8511-01 16 27476021 27476021 T G GTF3C1 Missense_Mutation p.D1831A 0.21 tolerated(0.11) benign(0.01) TCGA-55-8511-01 16 28935744 28935744 G C RABEP2 Missense_Mutation p.S85W 0.13 deleterious(0) probably_damaging(1) TCGA-55-8511-01 16 30536818 30536818 G T ZNF768 Missense_Mutation p.P215T 0.16 tolerated_low_confidence(0.08) benign(0.003) TCGA-55-8511-01 16 3063831 3063831 C T CLDN9 Silent p.L156L 0.18 TCGA-55-8511-01 16 3075767 3075767 C T THOC6 Missense_Mutation p.S33L 0.19 deleterious(0) possibly_damaging(0.728) TCGA-55-8511-01 16 3075773 3075773 G T THOC6 Missense_Mutation p.C35F 0.19 deleterious(0.04) probably_damaging(0.996) TCGA-55-8511-01 16 31196454 31196454 G A FUS Missense_Mutation p.E240K 0.14 tolerated(0.15) unknown(0) TCGA-55-8511-01 16 31339483 31339483 C G ITGAM Silent p.P909P 0.06 TCGA-55-8511-01 16 455026 455026 T G DECR2 Splice_Site p.X50_splice 0.06 TCGA-55-8511-01 16 49671199 49671199 C A ZNF423 Missense_Mutation p.A622S 0.19 tolerated(0.65) benign(0.004) TCGA-55-8511-01 16 50753905 50753905 C A NOD2 Silent p.S900S 0.14 TCGA-55-8511-01 16 5083425 5083425 C T NAGPA Missense_Mutation p.D131N 0.28 benign(0.003) TCGA-55-8511-01 16 51175681 51175681 C A SALL1 Missense_Mutation p.S151I 0.16 tolerated(0.2) benign(0.068) TCGA-55-8511-01 16 53860355 53860355 A T FTO Missense_Mutation p.N235Y 0.19 deleterious(0) probably_damaging(1) TCGA-55-8511-01 16 54319093 54319093 C A IRX3 Missense_Mutation p.G234W 0.29 deleterious(0) possibly_damaging(0.808) TCGA-55-8511-01 16 55361260 55361260 C A IRX6 Missense_Mutation p.A119E 0.10 deleterious(0) benign(0.211) TCGA-55-8511-01 16 58594169 58594170 - C CNOT1 Frame_Shift_Ins p.P693Afs*7 0.13 TCGA-55-8511-01 16 58756150 58756150 G T GOT2 Missense_Mutation p.D93E 0.14 deleterious(0.03) benign(0.074) TCGA-55-8511-01 16 64982652 64982652 C T CDH11 Intron 0.14 TCGA-55-8511-01 16 65038635 65038635 C G CDH11 Missense_Mutation p.Q46H 0.09 tolerated(0.18) probably_damaging(0.99) TCGA-55-8511-01 16 67859100 67859100 G A TSNAXIP1 Missense_Mutation p.A193T 0.19 deleterious(0) probably_damaging(0.999) TCGA-55-8511-01 16 70497656 70497656 G A FUK Silent p.L71L 0.15 TCGA-55-8511-01 16 71007820 71007820 C A HYDIN Missense_Mutation p.G1714V 0.04 probably_damaging(0.998) TCGA-55-8511-01 16 71317643 71317643 C A CMTR2 Missense_Mutation p.M727I 0.15 tolerated(0.2) benign(0.021) TCGA-55-8511-01 16 74716671 74716671 T C MLKL Silent p.Q278Q 0.12 TCGA-55-8511-01 16 81062225 81062225 G C CENPN Intron 0.15 TCGA-55-8511-01 16 83159101 83159101 G A CDH13 Missense_Mutation p.G207S 0.13 tolerated(0.5) probably_damaging(1) TCGA-55-8511-01 16 857586 857586 C A PRR25 Missense_Mutation p.L195M 0.32 tolerated_low_confidence(0.23) benign(0.144) TCGA-55-8511-01 16 87445372 87445372 G A ZCCHC14 Silent p.P848P 0.29 TCGA-55-8511-01 16 89293148 89293148 G C ZNF778 Missense_Mutation p.G123A 0.13 deleterious(0.02) possibly_damaging(0.708) TCGA-55-8511-01 16 89763927 89763927 C T SPATA2L Missense_Mutation p.G364S 0.15 deleterious(0) possibly_damaging(0.863) TCGA-55-8511-01 17 10212659 10212659 C A MYH13 Missense_Mutation p.E1687D 0.22 deleterious(0) benign(0.076) TCGA-55-8511-01 17 10302141 10302141 G T MYH8 Missense_Mutation p.Q1309K 0.31 tolerated(0.23) benign(0.347) TCGA-55-8511-01 17 11648375 11648375 C A DNAH9 Missense_Mutation p.Q2125K 0.22 probably_damaging(0.954) TCGA-55-8511-01 17 12028610 12028610 G A MAP2K4 Splice_Site p.X272_splice 0.14 TCGA-55-8511-01 17 1650725 1650725 A G SERPINF2 Missense_Mutation p.T212A 0.12 deleterious(0) possibly_damaging(0.902) TCGA-55-8511-01 17 17131234 17131234 C A FLCN Missense_Mutation p.S73I 0.19 deleterious(0.01) benign(0.034) TCGA-55-8511-01 17 17726837 17726837 A T SREBF1 Missense_Mutation p.F59Y 0.13 tolerated(0.32) possibly_damaging(0.719) TCGA-55-8511-01 17 20000071 20000071 A G SPECC1 Missense_Mutation p.K36R 0.12 tolerated(0.29) benign(0.053) TCGA-55-8511-01 17 28530214 28530214 G A SLC6A4 Silent p.I598I 0.04 TCGA-55-8511-01 17 28530257 28530257 G T SLC6A4 Nonsense_Mutation p.S584* 0.05 TCGA-55-8511-01 17 29559097 29559097 G T NF1 Missense_Mutation p.L1068F 0.20 deleterious(0.03) possibly_damaging(0.637) TCGA-55-8511-01 17 29559098 29559098 G T NF1 Missense_Mutation p.D1069Y 0.21 deleterious(0) possibly_damaging(0.768) TCGA-55-8511-01 17 33521101 33521101 G T SLC35G3 Silent p.R76R 0.16 TCGA-55-8511-01 17 35825576 35825576 G T TADA2A Nonsense_Mutation p.E252* 0.09 TCGA-55-8511-01 17 36352503 36352503 C A RP11-1407O15.2 Missense_Mutation p.E428D 0.14 TCGA-55-8511-01 17 37101262 37101262 A T FBXO47 Missense_Mutation p.N248K 0.04 deleterious(0.03) possibly_damaging(0.482) TCGA-55-8511-01 17 37187593 37187593 G C CTD-2206N4.2 5'Flank 0.35 TCGA-55-8511-01 17 38130567 38130567 C T GSDMA Nonsense_Mutation p.Q265* 0.27 TCGA-55-8511-01 17 40180097 40180097 G T ZNF385C Missense_Mutation p.Q380K 0.39 deleterious(0.01) possibly_damaging(0.699) TCGA-55-8511-01 17 4053260 4053260 C T CYB5D2 Missense_Mutation p.S109L 0.34 deleterious(0.01) benign(0.224) TCGA-55-8511-01 17 45669345 45669345 G T NPEPPS Missense_Mutation p.E428D 0.11 deleterious(0) possibly_damaging(0.802) TCGA-55-8511-01 17 48435699 48435699 C T XYLT2 Silent p.I691I 0.21 TCGA-55-8511-01 17 51900723 51900723 G A KIF2B Missense_Mutation p.R110H 0.23 tolerated(0.08) benign(0.24) TCGA-55-8511-01 17 5383839 5383839 C A DERL2 Missense_Mutation p.V131L 0.27 deleterious(0.03) benign(0.107) TCGA-55-8511-01 17 61972832 61972832 C T CSH1 Splice_Site p.X152_splice 0.16 TCGA-55-8511-01 17 66878832 66878832 G A ABCA8 Nonsense_Mutation p.Q1206* 0.04 TCGA-55-8511-01 17 66881424 66881424 G T ABCA8 Missense_Mutation p.F1114L 0.30 tolerated(0.91) benign(0.004) TCGA-55-8511-01 17 72443027 72443027 G A GPRC5C Missense_Mutation p.A441T 0.06 tolerated(0.28) benign(0.411) TCGA-55-8511-01 17 72540836 72540836 G T CD300C Missense_Mutation p.D104E 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-8511-01 17 72916420 72916420 C G USH1G Missense_Mutation p.E171Q 0.10 tolerated(0.15) benign(0.334) TCGA-55-8511-01 17 73699388 73699388 C T SAP30BP Intron 0.28 TCGA-55-8511-01 17 74078063 74078063 C A ZACN Missense_Mutation p.S327R 0.29 tolerated(0.39) benign(0.003) TCGA-55-8511-01 17 74533529 74533529 G T CYGB Silent p.A32A 0.19 TCGA-55-8511-01 17 74772621 74772621 C T MFSD11 Nonsense_Mutation p.Q395* 0.16 TCGA-55-8511-01 17 7480984 7480984 C T EIF4A1 Missense_Mutation p.T289I 0.22 deleterious(0) probably_damaging(0.956) TCGA-55-8511-01 17 7577052 7577052 G - TP53 Frame_Shift_Del p.H296Tfs*49 0.28 TCGA-55-8511-01 17 76122982 76122982 C T TMC6 5'UTR 0.23 TCGA-55-8511-01 17 76210845 76210845 G T BIRC5 Missense_Mutation p.G66C 0.14 deleterious(0.01) probably_damaging(1) TCGA-55-8511-01 17 76446405 76446405 C A DNAH17 Missense_Mutation p.R3643S 0.14 probably_damaging(0.928) TCGA-55-8511-01 17 78113486 78113486 T C EIF4A3 Missense_Mutation p.D190G 0.16 deleterious(0) probably_damaging(1) TCGA-55-8511-01 17 7838317 7838317 C T CNTROB Silent p.L150L 0.23 TCGA-55-8511-01 17 7919269 7919269 G C GUCY2D Missense_Mutation p.S1023T 0.21 tolerated(0.09) benign(0.078) TCGA-55-8511-01 17 80708596 80708596 C T FN3K Missense_Mutation p.P299S 0.21 tolerated(1) benign(0.002) TCGA-55-8511-01 18 14799108 14799108 G T ANKRD30B Missense_Mutation p.D680Y 0.24 deleterious(0) benign(0.019) TCGA-55-8511-01 18 21042969 21042969 G T RIOK3 Missense_Mutation p.L35F 0.24 tolerated(0.16) benign(0.129) TCGA-55-8511-01 18 21948316 21948316 C A OSBPL1A Missense_Mutation p.G48C 0.16 deleterious(0) probably_damaging(1) TCGA-55-8511-01 18 24496403 24496403 G A CHST9 Silent p.I384I 0.09 TCGA-55-8511-01 18 29036439 29036439 G T DSG3 Splice_Site p.X28_splice 0.18 TCGA-55-8511-01 18 29175156 29175156 G T TTR Nonsense_Mutation p.E92* 0.17 TCGA-55-8511-01 18 29782951 29782951 A G MEP1B Missense_Mutation p.I116V 0.33 deleterious(0.03) benign(0.4) TCGA-55-8511-01 18 47810332 47810332 G T CXXC1 Missense_Mutation p.R453S 0.22 tolerated(0.23) benign(0.009) TCGA-55-8511-01 18 48604733 48604733 A T SMAD4 Nonsense_Mutation p.K519* 0.26 TCGA-55-8511-01 18 61390622 61390622 G T SERPINB11 Missense_Mutation p.A390S 0.22 tolerated(1) benign(0.031) TCGA-55-8511-01 19 10385516 10385516 G C ICAM1 Missense_Mutation p.C48S 0.30 deleterious(0) probably_damaging(1) TCGA-55-8511-01 19 10747196 10747196 G T SLC44A2 Missense_Mutation p.W477C 0.37 deleterious(0) probably_damaging(1) TCGA-55-8511-01 19 14083597 14083597 G A RFX1 Silent p.A424A 0.30 TCGA-55-8511-01 19 17844222 17844222 G T MAP1S Missense_Mutation p.W1003C 0.21 deleterious(0) probably_damaging(0.998) TCGA-55-8511-01 19 21607149 21607149 A G ZNF493 Missense_Mutation p.H563R 0.05 deleterious(0) probably_damaging(0.999) TCGA-55-8511-01 19 2220221 2220221 G T DOT1L Missense_Mutation p.G936C 0.19 deleterious_low_confidence(0.05) probably_damaging(0.999) TCGA-55-8511-01 19 362233 362233 T C THEG Silent p.P369P 0.21 TCGA-55-8511-01 19 41622228 41622228 G A CYP2F1 Silent p.L45L 0.26 TCGA-55-8511-01 19 43965824 43965824 C A LYPD3 Silent p.R240R 0.29 TCGA-55-8511-01 19 44591055 44591055 G A ZNF284 Missense_Mutation p.R475K 0.25 tolerated(0.18) benign(0.44) TCGA-55-8511-01 19 49939900 49939900 C A SLC17A7 Missense_Mutation p.C74F 0.22 deleterious(0.03) benign(0.038) TCGA-55-8511-01 19 52004786 52004786 C A SIGLEC12 Missense_Mutation p.D68Y 0.29 deleterious(0.02) benign(0.014) TCGA-55-8511-01 19 52519340 52519340 A T ZNF614 Missense_Mutation p.I504N 0.07 deleterious(0.02) possibly_damaging(0.691) TCGA-55-8511-01 19 53668715 53668715 T C ZNF665 Missense_Mutation p.E343G 0.25 deleterious(0.01) probably_damaging(0.952) TCGA-55-8511-01 19 55247648 55247648 G T KIR3DL3 3'UTR 0.23 TCGA-55-8511-01 19 55247649 55247649 G T KIR3DL3 3'UTR 0.22 TCGA-55-8511-01 19 55451187 55451187 G C NLRP7 Missense_Mutation p.L334V 0.29 deleterious(0.02) probably_damaging(0.988) TCGA-55-8511-01 19 55494889 55494889 G A NLRP2 Missense_Mutation p.C608Y 0.21 deleterious(0) probably_damaging(0.979) TCGA-55-8511-01 19 55832411 55832411 C A TMEM150B 5'UTR 0.30 TCGA-55-8511-01 19 56313042 56313042 C A NLRP11 Silent p.R689R 0.31 TCGA-55-8511-01 19 56313043 56313043 C T NLRP11 Missense_Mutation p.R689Q 0.31 tolerated(0.63) benign(0.029) TCGA-55-8511-01 19 6854071 6854071 G T VAV1 Nonsense_Mutation p.G816* 0.39 TCGA-55-8511-01 19 9577873 9577873 G T ZNF560 Missense_Mutation p.R584S 0.31 tolerated(1) possibly_damaging(0.602) TCGA-55-8511-01 1 10720401 10720401 C A CASZ1 Missense_Mutation p.R233L 0.15 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-55-8511-01 1 11577566 11577566 C A PTCHD2 Missense_Mutation p.S599Y 0.13 deleterious(0) possibly_damaging(0.819) TCGA-55-8511-01 1 11594530 11594530 G T PTCHD2 Missense_Mutation p.E1156D 0.14 tolerated(0.25) benign(0.07) TCGA-55-8511-01 1 12908061 12908061 C G HNRNPCL1 Missense_Mutation p.V28L 0.06 deleterious(0.02) benign(0.38) TCGA-55-8511-01 1 145109649 145109649 C T SEC22B RNA 0.03 TCGA-55-8511-01 1 147380507 147380507 G T GJA8 Missense_Mutation p.R142L 0.12 deleterious(0.02) benign(0.199) TCGA-55-8511-01 1 149901688 149901688 G A MTMR11 Missense_Mutation p.R590C 0.07 deleterious(0) probably_damaging(0.93) TCGA-55-8511-01 1 150238981 150238981 A C APH1A Missense_Mutation p.F229V 0.13 deleterious(0) possibly_damaging(0.819) TCGA-55-8511-01 1 151276019 151276019 G A PI4KB Silent p.I518I 0.09 TCGA-55-8511-01 1 152057975 152057975 T C TCHHL1 Missense_Mutation p.N728S 0.28 tolerated(0.25) benign(0.015) TCGA-55-8511-01 1 152058012 152058012 C A TCHHL1 Missense_Mutation p.A716S 0.28 tolerated(0.15) benign(0.057) TCGA-55-8511-01 1 152538464 152538464 C - LCE3E Frame_Shift_Del p.G74Afs*45 0.13 TCGA-55-8511-01 1 153029116 153029116 G T SPRR2A Nonsense_Mutation p.C32* 0.10 TCGA-55-8511-01 1 153346389 153346389 G A S100A12 Nonsense_Mutation p.Q65* 0.20 TCGA-55-8511-01 1 153751843 153751843 C A SLC27A3 Missense_Mutation p.A637E 0.09 deleterious(0) possibly_damaging(0.656) TCGA-55-8511-01 1 154226440 154226440 C T UBAP2L Nonsense_Mutation p.Q577* 0.14 TCGA-55-8511-01 1 154226537 154226537 C T UBAP2L Missense_Mutation p.S609L 0.16 deleterious(0.01) benign(0.184) TCGA-55-8511-01 1 154227664 154227664 C T UBAP2L Missense_Mutation p.S649F 0.09 deleterious(0) unknown(0) TCGA-55-8511-01 1 156268882 156268882 C A VHLL Missense_Mutation p.E33D 0.32 tolerated(0.07) benign(0.304) TCGA-55-8511-01 1 156352641 156352641 T C RHBG Silent p.S405S 0.16 TCGA-55-8511-01 1 156616747 156616747 G T BCAN Silent p.L82L 0.17 TCGA-55-8511-01 1 156933010 156933010 C T ARHGEF11 Silent p.A375A 0.20 TCGA-55-8511-01 1 157490888 157490888 C A FCRL5 Nonsense_Mutation p.E812* 0.14 TCGA-55-8511-01 1 157516823 157516823 T A FCRL5 Missense_Mutation p.N73Y 0.04 deleterious(0) probably_damaging(0.979) TCGA-55-8511-01 1 158435423 158435423 G T OR10K1 Missense_Mutation p.Q24H 0.33 tolerated(0.14) probably_damaging(0.998) TCGA-55-8511-01 1 158517594 158517594 C A OR6Y1 Missense_Mutation p.G101V 0.17 deleterious(0.01) benign(0.102) TCGA-55-8511-01 1 158615363 158615363 A T SPTA1 Missense_Mutation p.S1306R 0.34 tolerated(0.06) benign(0.424) TCGA-55-8511-01 1 158990277 158990277 C A IFI16 Missense_Mutation p.N373K 0.12 tolerated(0.62) possibly_damaging(0.74) TCGA-55-8511-01 1 159166834 159166834 C A CADM3 Nonsense_Mutation p.Y346* 0.11 TCGA-55-8511-01 1 159558301 159558301 T A APCS Missense_Mutation p.Y159N 0.30 deleterious(0) probably_damaging(0.99) TCGA-55-8511-01 1 161049394 161049394 C T PVRL4 Missense_Mutation p.R142Q 0.10 tolerated(0.53) benign(0.093) TCGA-55-8511-01 1 16577832 16577832 C A FBXO42 Missense_Mutation p.R496I 0.12 tolerated_low_confidence(0.19) benign(0.075) TCGA-55-8511-01 1 166891880 166891880 C A ILDR2 Silent p.G387G 0.17 TCGA-55-8511-01 1 169391213 169391213 A C CCDC181 Silent p.L152L 0.16 TCGA-55-8511-01 1 171504572 171504572 G A PRRC2C Missense_Mutation p.E625K 0.10 unknown(0) TCGA-55-8511-01 1 175046693 175046693 A G TNN Missense_Mutation p.K47E 0.19 deleterious(0) possibly_damaging(0.589) TCGA-55-8511-01 1 175087760 175087760 G T TNN Missense_Mutation p.W817L 0.16 deleterious(0) possibly_damaging(0.855) TCGA-55-8511-01 1 175372484 175372484 G T TNR Nonsense_Mutation p.Y256* 0.20 TCGA-55-8511-01 1 17575701 17575701 G A PADI3 Silent p.V23V 0.10 TCGA-55-8511-01 1 17601209 17601209 T A PADI3 Missense_Mutation p.V412D 0.12 deleterious(0) probably_damaging(0.983) TCGA-55-8511-01 1 176564119 176564119 T C PAPPA2 Missense_Mutation p.F460S 0.15 deleterious(0) probably_damaging(0.987) TCGA-55-8511-01 1 182617329 182617329 C A RGS8 Silent p.L119L 0.18 TCGA-55-8511-01 1 184764764 184764764 G A FAM129A Missense_Mutation p.L712F 0.25 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-55-8511-01 1 196642254 196642255 GG T CFH Frame_Shift_Del p.G69* 0.12 TCGA-55-8511-01 1 196646761 196646761 G T CFH Missense_Mutation p.D195Y 0.24 deleterious(0.01) probably_damaging(0.976) TCGA-55-8511-01 1 196749104 196749104 G T CFHR3 Splice_Site p.X144_splice 0.21 TCGA-55-8511-01 1 197398725 197398725 G T CRB1 Silent p.P941P 0.22 TCGA-55-8511-01 1 198719620 198719620 G A PTPRC Splice_Site p.X1025_splice 0.19 TCGA-55-8511-01 1 19950001 19950002 - G MINOS1 Frame_Shift_Ins p.L51Ifs*11 0.21 TCGA-55-8511-01 1 19992763 19992763 C T HTR6 Missense_Mutation p.R173W 0.18 deleterious(0.02) possibly_damaging(0.773) TCGA-55-8511-01 1 200613583 200613583 T A DDX59 Silent p.S553S 0.19 TCGA-55-8511-01 1 200948841 200948841 G A KIF21B Nonsense_Mutation p.R1328* 0.21 TCGA-55-8511-01 1 201342467 201342467 C G TNNT2 5'UTR 0.18 TCGA-55-8511-01 1 204199638 204199638 C A PLEKHA6 Missense_Mutation p.R829L 0.23 deleterious(0) benign(0.414) TCGA-55-8511-01 1 204513695 204513695 A T MDM4 Silent p.T235T 0.18 TCGA-55-8511-01 1 21205926 21205926 C G EIF4G3 Missense_Mutation p.V788L 0.19 deleterious(0) possibly_damaging(0.897) TCGA-55-8511-01 1 2160657 2160657 C T SKI Missense_Mutation p.S151L 0.17 deleterious(0) probably_damaging(0.988) TCGA-55-8511-01 1 216107963 216107963 G A USH2A Missense_Mutation p.P2432L 0.14 probably_damaging(0.986) TCGA-55-8511-01 1 216380639 216380639 T A USH2A Missense_Mutation p.T1098S 0.16 benign(0.027) TCGA-55-8511-01 1 220170599 220170599 C A EPRS Missense_Mutation p.R756I 0.26 deleterious(0.05) benign(0.315) TCGA-55-8511-01 1 22202157 22202157 G A HSPG2 Silent p.I1089I 0.22 TCGA-55-8511-01 1 222721151 222721151 G T HHIPL2 Missense_Mutation p.A79D 0.19 tolerated(0.08) probably_damaging(0.984) TCGA-55-8511-01 1 222902980 222902980 G C BROX Missense_Mutation p.E259Q 0.19 tolerated(0.73) benign(0.026) TCGA-55-8511-01 1 22902977 22902977 C T EPHA8 Missense_Mutation p.L143F 0.19 tolerated(0.17) benign(0.229) TCGA-55-8511-01 1 230415067 230415067 G C GALNT2 Missense_Mutation p.G527R 0.16 tolerated(0.29) benign(0.003) TCGA-55-8511-01 1 230838850 230838850 G T AGT 3'UTR 0.21 TCGA-55-8511-01 1 235950500 235950500 C A LYST Missense_Mutation p.R1621M 0.16 deleterious(0.01) possibly_damaging(0.713) TCGA-55-8511-01 1 235993607 235993607 C A LYST Silent p.T37T 0.23 TCGA-55-8511-01 1 237801687 237801687 C G RYR2 Missense_Mutation p.Q2275E 0.18 benign(0.241) TCGA-55-8511-01 1 237880564 237880564 T A RYR2 Missense_Mutation p.S3464T 0.16 probably_damaging(0.953) TCGA-55-8511-01 1 238053916 238053916 A G ZP4 Missense_Mutation p.V7A 0.14 deleterious(0.01) benign(0.011) TCGA-55-8511-01 1 243349344 243349344 C A CEP170 Missense_Mutation p.G435C 0.18 deleterious(0.02) possibly_damaging(0.896) TCGA-55-8511-01 1 24664266 24664266 C A GRHL3 Missense_Mutation p.S276Y 0.22 deleterious(0.05) probably_damaging(0.952) TCGA-55-8511-01 1 247151164 247151164 C T ZNF695 Missense_Mutation p.G218D 0.23 deleterious(0.03) possibly_damaging(0.908) TCGA-55-8511-01 1 247320309 247320309 G T ZNF124 Silent p.P143P 0.21 TCGA-55-8511-01 1 247587423 247587423 G T NLRP3 Silent p.G226G 0.17 TCGA-55-8511-01 1 247588697 247588697 C A NLRP3 Missense_Mutation p.P651H 0.16 tolerated(0.14) probably_damaging(0.99) TCGA-55-8511-01 1 248112697 248112697 G T OR2L8 Missense_Mutation p.V180F 0.19 deleterious(0.02) benign(0.399) TCGA-55-8511-01 1 248201645 248201645 G A OR2L2 Missense_Mutation p.V26I 0.23 deleterious(0.04) benign(0) TCGA-55-8511-01 1 248202347 248202347 C A OR2L2 Missense_Mutation p.R260S 0.13 deleterious(0.03) possibly_damaging(0.524) TCGA-55-8511-01 1 248569939 248569939 G A OR2T1 Missense_Mutation p.S215N 0.11 tolerated(0.14) possibly_damaging(0.857) TCGA-55-8511-01 1 248616140 248616140 C A OR2T2 Silent p.V14V 0.09 TCGA-55-8511-01 1 248637458 248637458 C T OR2T3 Silent p.S269S 0.09 TCGA-55-8511-01 1 248737252 248737252 G A OR2T34 Silent p.S269S 0.25 TCGA-55-8511-01 1 28541501 28541501 G A DNAJC8 Nonsense_Mutation p.Q63* 0.19 TCGA-55-8511-01 1 2938889 2938889 G A ACTRT2 Silent p.V213V 0.25 TCGA-55-8511-01 1 33960237 33960237 C A ZSCAN20 Missense_Mutation p.P765T 0.17 deleterious(0) probably_damaging(1) TCGA-55-8511-01 1 34190286 34190286 G T CSMD2 Missense_Mutation p.D865E 0.07 tolerated(0.08) possibly_damaging(0.515) TCGA-55-8511-01 1 40349073 40349073 C T TRIT1 Missense_Mutation p.A31T 0.09 deleterious(0) probably_damaging(0.946) TCGA-55-8511-01 1 43675472 43675472 C T WDR65 Missense_Mutation p.S605F 0.22 deleterious(0) probably_damaging(0.985) TCGA-55-8511-01 1 52861904 52861904 G T ORC1 Missense_Mutation p.P179T 0.08 tolerated(0.58) benign(0.007) TCGA-55-8511-01 1 53554610 53554610 A T SLC1A7 Missense_Mutation p.L468Q 0.18 deleterious(0) probably_damaging(1) TCGA-55-8511-01 1 55307479 55307479 G A C1orf177 Missense_Mutation p.R397K 0.19 deleterious(0.02) possibly_damaging(0.755) TCGA-55-8511-01 1 55319778 55319778 C G DHCR24 Missense_Mutation p.V384L 0.11 tolerated(0.25) benign(0.029) TCGA-55-8511-01 1 55619930 55619930 C T USP24 Silent p.L558L 0.24 TCGA-55-8511-01 1 59042390 59042390 C A TACSTD2 Nonsense_Mutation p.E147* 0.10 TCGA-55-8511-01 1 68910479 68910479 G T RPE65 Silent p.P111P 0.11 TCGA-55-8511-01 1 68910559 68910559 G T RPE65 Missense_Mutation p.R85S 0.13 tolerated(0.12) possibly_damaging(0.637) TCGA-55-8511-01 1 71546712 71546712 T A ZRANB2 5'UTR 0.30 TCGA-55-8511-01 1 72076727 72076727 C A NEGR1 Missense_Mutation p.W257L 0.07 deleterious(0) probably_damaging(1) TCGA-55-8511-01 1 72163783 72163783 C A NEGR1 Missense_Mutation p.G192V 0.06 deleterious(0.01) possibly_damaging(0.536) TCGA-55-8511-01 1 74834798 74834798 G A FPGT-TNNI3K Missense_Mutation p.G586S 0.15 deleterious(0) probably_damaging(1) TCGA-55-8511-01 1 78959189 78959189 T C PTGFR Missense_Mutation p.I254T 0.20 deleterious(0) probably_damaging(1) TCGA-55-8511-01 1 79129608 79129608 A C IFI44 3'UTR 0.30 TCGA-55-8511-01 1 86820356 86820356 C T ODF2L Missense_Mutation p.A542T 0.11 tolerated(0.4) benign(0.017) TCGA-55-8511-01 1 89476789 89476789 T C GBP3 Missense_Mutation p.D387G 0.33 deleterious(0.03) benign(0.005) TCGA-55-8511-01 1 94685949 94685949 C A ARHGAP29 Splice_Site p.X69_splice 0.16 TCGA-55-8511-01 20 13867053 13867053 C A SEL1L2 Missense_Mutation p.V261L 0.10 deleterious(0.01) possibly_damaging(0.868) TCGA-55-8511-01 20 25481503 25481503 C A NINL Silent p.G335G 0.08 TCGA-55-8511-01 20 2633449 2633449 G A NOP56 Intron 0.23 TCGA-55-8511-01 20 31019451 31019451 G A ASXL1 Silent p.A316A 0.09 TCGA-55-8511-01 20 34021704 34021704 C A GDF5 3'UTR 0.14 TCGA-55-8511-01 20 3687145 3687145 G C SIGLEC1 Silent p.R86R 0.06 TCGA-55-8511-01 20 42311498 42311498 G T MYBL2 Missense_Mutation p.G84V 0.18 deleterious(0) probably_damaging(1) TCGA-55-8511-01 20 44521859 44521859 G T CTSA Missense_Mutation p.G219W 0.11 deleterious(0) probably_damaging(1) TCGA-55-8511-01 20 44521860 44521860 G T CTSA Missense_Mutation p.G219V 0.11 deleterious(0) probably_damaging(0.999) TCGA-55-8511-01 20 45132908 45132908 C A ZNF334 Missense_Mutation p.L62F 0.06 deleterious(0) possibly_damaging(0.694) TCGA-55-8511-01 20 47990689 47990689 C T KCNB1 Missense_Mutation p.E470K 0.13 deleterious(0.04) benign(0.207) TCGA-55-8511-01 20 55027388 55027388 A C CASS4 Silent p.R386R 0.11 TCGA-55-8511-01 20 57769371 57769371 C A ZNF831 Silent p.P1099P 0.15 TCGA-55-8511-01 20 9364848 9364848 G T PLCB4 Missense_Mutation p.G285V 0.08 deleterious(0.05) possibly_damaging(0.53) TCGA-55-8511-01 21 11049486 11049486 C A BAGE2 RNA 0.08 TCGA-55-8511-01 21 14417548 14417548 T A RNU6-614P 5'Flank 0.09 TCGA-55-8511-01 21 28210485 28210485 C G ADAMTS1 Missense_Mutation p.A773P 0.13 tolerated(0.05) probably_damaging(0.99) TCGA-55-8511-01 21 28302279 28302279 C T ADAMTS5 Silent p.Q717Q 0.23 TCGA-55-8511-01 21 31655028 31655028 T A KRTAP24-1 Missense_Mutation p.S75C 0.18 tolerated(0.09) benign(0.285) TCGA-55-8511-01 21 31744502 31744502 G T KRTAP13-2 Missense_Mutation p.F10L 0.17 deleterious(0) probably_damaging(0.924) TCGA-55-8511-01 21 32595770 32595770 C A TIAM1 Silent p.V649V 0.23 TCGA-55-8511-01 21 32638638 32638638 C A TIAM1 Silent p.R217R 0.23 TCGA-55-8511-01 21 35257749 35257749 C - ITSN1 Frame_Shift_Del p.Q1590Kfs*9 0.19 TCGA-55-8511-01 21 39427008 39427008 G T DSCR4 Missense_Mutation p.L100I 0.23 possibly_damaging(0.567) TCGA-55-8511-01 21 40604114 40604114 T C BRWD1 Missense_Mutation p.M997V 0.14 tolerated(0.22) benign(0.01) TCGA-55-8511-01 21 47556288 47556288 G T FTCD 3'UTR 0.28 TCGA-55-8511-01 21 47588330 47588330 C A SPATC1L Missense_Mutation p.D146Y 0.24 deleterious(0) probably_damaging(0.957) TCGA-55-8511-01 22 16287806 16287806 C A POTEH Missense_Mutation p.W27L 0.14 deleterious_low_confidence(0) benign(0.219) TCGA-55-8511-01 22 20073323 20073323 C T DGCR8 5'UTR 0.11 TCGA-55-8511-01 22 20785162 20785162 C T SCARF2 Silent p.T296T 0.28 TCGA-55-8511-01 22 22890891 22890891 G A PRAME Silent p.A376A 0.17 TCGA-55-8511-01 22 22892596 22892596 C A PRAME Nonsense_Mutation p.E169* 0.23 TCGA-55-8511-01 22 26839279 26839279 C A ASPHD2 3'UTR 0.18 TCGA-55-8511-01 22 37964675 37964675 G C CDC42EP1 Missense_Mutation p.E342Q 0.40 tolerated(0.24) unknown(0) TCGA-55-8511-01 22 50169309 50169309 C G BRD1 Missense_Mutation p.G975R 0.24 deleterious(0) probably_damaging(1) TCGA-55-8511-01 2 101902614 101902614 C G RNF149 Missense_Mutation p.D297H 0.18 deleterious(0) probably_damaging(1) TCGA-55-8511-01 2 108868909 108868909 C A SULT1C3 Missense_Mutation p.H87Q 0.09 tolerated(0.19) benign(0.053) TCGA-55-8511-01 2 108869887 108869887 G C SULT1C3 Missense_Mutation p.E130Q 0.17 tolerated(1) benign(0.038) TCGA-55-8511-01 2 113742478 113742478 G A IL36G Missense_Mutation p.R121H 0.03 tolerated(1) benign(0.011) TCGA-55-8511-01 2 113765486 113765486 G A IL36A Silent p.R114R 0.08 TCGA-55-8511-01 2 114202563 114202563 G T CBWD2 Nonsense_Mutation p.E121* 0.11 TCGA-55-8511-01 2 116497458 116497458 C A DPP10 Missense_Mutation p.P285T 0.18 tolerated(0.16) probably_damaging(0.947) TCGA-55-8511-01 2 116539939 116539939 C G DPP10 Missense_Mutation p.P503A 0.24 deleterious(0.02) probably_damaging(1) TCGA-55-8511-01 2 120438966 120438966 G A TMEM177 Silent p.G179G 0.10 TCGA-55-8511-01 2 128339541 128339541 C T MYO7B Silent p.L386L 0.11 TCGA-55-8511-01 2 128408856 128408856 C A GPR17 Missense_Mutation p.Q211K 0.14 tolerated(0.27) benign(0.241) TCGA-55-8511-01 2 130831864 130831864 C A POTEF Nonsense_Mutation p.E1061* 0.10 TCGA-55-8511-01 2 133539612 133539612 G T NCKAP5 Missense_Mutation p.P1591Q 0.19 deleterious(0.02) possibly_damaging(0.819) TCGA-55-8511-01 2 141283881 141283881 C A LRP1B Missense_Mutation p.G2601W 0.08 probably_damaging(0.991) TCGA-55-8511-01 2 141473584 141473584 C A LRP1B Missense_Mutation p.G1994V 0.12 probably_damaging(0.988) TCGA-55-8511-01 2 143799767 143799767 A T KYNU 3'UTR 0.13 TCGA-55-8511-01 2 149247385 149247385 G T MBD5 Missense_Mutation p.R1162I 0.18 deleterious_low_confidence(0) unknown(0) TCGA-55-8511-01 2 149987448 149987448 T G LYPD6B 5'UTR 0.17 TCGA-55-8511-01 2 153399312 153399312 G T FMNL2 Silent p.L87L 0.08 TCGA-55-8511-01 2 1546231 1546231 G T TPO Silent p.L929L 0.09 TCGA-55-8511-01 2 15542344 15542344 G A NBAS Nonsense_Mutation p.Q1007* 0.21 TCGA-55-8511-01 2 162274751 162274751 G C TBR1 Missense_Mutation p.G296A 0.33 deleterious(0.02) probably_damaging(0.994) TCGA-55-8511-01 2 163230091 163230091 G T KCNH7 Nonsense_Mutation p.Y1071* 0.18 TCGA-55-8511-01 2 163236406 163236406 C - KCNH7 Frame_Shift_Del p.E1030Kfs*6 0.12 TCGA-55-8511-01 2 165953009 165953009 C T SCN3A Missense_Mutation p.D1421N 0.08 deleterious(0.03) benign(0.219) TCGA-55-8511-01 2 168106935 168106935 A T XIRP2 Missense_Mutation p.E3011D 0.20 probably_damaging(0.999) TCGA-55-8511-01 2 168114861 168114861 C T XIRP2 3'UTR 0.08 TCGA-55-8511-01 2 17698792 17698792 G T RAD51AP2 Nonsense_Mutation p.Y297* 0.12 TCGA-55-8511-01 2 179426018 179426018 C T TTN Missense_Mutation p.G28281R 0.14 TCGA-55-8511-01 2 179458185 179458185 C G TTN Missense_Mutation p.D19584H 0.13 TCGA-55-8511-01 2 179458345 179458345 C T TTN Missense_Mutation p.G19561E 0.16 TCGA-55-8511-01 2 183699692 183699692 G A FRZB Missense_Mutation p.R288C 0.15 deleterious(0.01) probably_damaging(0.967) TCGA-55-8511-01 2 185800793 185800793 G T ZNF804A Missense_Mutation p.V224L 0.18 tolerated(0.09) benign(0.038) TCGA-55-8511-01 2 187529274 187529274 A T ITGAV Missense_Mutation p.K660M 0.10 tolerated(0.06) benign(0.027) TCGA-55-8511-01 2 18765912 18765912 G T NT5C1B Silent p.T257T 0.22 TCGA-55-8511-01 2 188223968 188223968 G A CALCRL Silent p.A271A 0.18 TCGA-55-8511-01 2 1926808 1926808 G T MYT1L Silent p.R245R 0.14 TCGA-55-8511-01 2 200213470 200213470 C A SATB2 Missense_Mutation p.S376I 0.13 deleterious(0.01) possibly_damaging(0.771) TCGA-55-8511-01 2 21234025 21234025 C T APOB Missense_Mutation p.M1905I 0.21 benign(0.001) TCGA-55-8511-01 2 219892534 219892534 C A CCDC108 Missense_Mutation p.K683N 0.11 tolerated(0.1) possibly_damaging(0.477) TCGA-55-8511-01 2 224749422 224749422 C A WDFY1 Missense_Mutation p.Q292H 0.10 deleterious(0.04) possibly_damaging(0.519) TCGA-55-8511-01 2 232141464 232141464 A G ARMC9 Missense_Mutation p.M484V 0.10 deleterious(0) probably_damaging(0.981) TCGA-55-8511-01 2 232262926 232262926 G T B3GNT7 Missense_Mutation p.G166W 0.19 deleterious(0.02) possibly_damaging(0.762) TCGA-55-8511-01 2 242741374 242741375 GC - GAL3ST2 Frame_Shift_Del p.R101Lfs*272 0.08 TCGA-55-8511-01 2 24398404 24398404 A C FAM228A Silent p.R19R 0.19 TCGA-55-8511-01 2 27439923 27439923 G T ATRAID 3'UTR 0.29 TCGA-55-8511-01 2 27660166 27660166 C G NRBP1 Nonsense_Mutation p.S281* 0.25 TCGA-55-8511-01 2 37580071 37580071 C T QPCT Missense_Mutation p.A87V 0.08 tolerated(1) benign(0.008) TCGA-55-8511-01 2 47256408 47256408 A C TTC7A Missense_Mutation p.K563Q 0.14 deleterious(0.04) benign(0.278) TCGA-55-8511-01 2 54153115 54153115 C A PSME4 Missense_Mutation p.V547F 0.17 tolerated(0.05) probably_damaging(0.911) TCGA-55-8511-01 2 63609160 63609160 T C WDPCP Missense_Mutation p.Y502C 0.15 tolerated(0.22) benign(0.005) TCGA-55-8511-01 2 70408788 70408788 C G C2orf42 Silent p.L110L 0.20 TCGA-55-8511-01 2 74074646 74074646 C T STAMBP Missense_Mutation p.R170W 0.20 deleterious(0) probably_damaging(0.912) TCGA-55-8511-01 2 75104414 75104414 C T HK2 Missense_Mutation p.R333C 0.08 tolerated(0.13) possibly_damaging(0.488) TCGA-55-8511-01 2 79312392 79312392 C A REG1B Missense_Mutation p.D151Y 0.12 deleterious(0) probably_damaging(0.992) TCGA-55-8511-01 2 85829103 85829103 G T TMEM150A 5'UTR 0.20 TCGA-55-8511-01 2 89339815 89339815 C - IGKV1-12 Frame_Shift_Del p.G86Afs*? 0.14 TCGA-55-8511-01 2 96047361 96047361 C T KCNIP3 Silent p.L155L 0.14 TCGA-55-8511-01 2 96919801 96919801 G A TMEM127 Silent p.I154I 0.17 TCGA-55-8511-01 2 97373562 97373562 C T LMAN2L Missense_Mutation p.D276N 0.21 deleterious(0) probably_damaging(1) TCGA-55-8511-01 3 112358479 112358479 G T CCDC80 Missense_Mutation p.P92T 0.23 deleterious_low_confidence(0.03) possibly_damaging(0.908) TCGA-55-8511-01 3 113114629 113114629 C G WDR52 Missense_Mutation p.V620L 0.08 deleterious(0) benign(0.222) TCGA-55-8511-01 3 123699285 123699285 G - ROPN1 Frame_Shift_Del p.P15Rfs*4 0.13 TCGA-55-8511-01 3 124141810 124141810 G T KALRN Missense_Mutation p.Q896H 0.21 deleterious(0) probably_damaging(0.964) TCGA-55-8511-01 3 130282322 130282322 G A COL6A6 Missense_Mutation p.V159M 0.09 deleterious(0) probably_damaging(0.966) TCGA-55-8511-01 3 133473504 133473504 C A TF Missense_Mutation p.P164H 0.13 deleterious(0.01) possibly_damaging(0.836) TCGA-55-8511-01 3 140167386 140167386 G C CLSTN2 Missense_Mutation p.Q271H 0.05 deleterious(0.03) benign(0.041) TCGA-55-8511-01 3 141292848 141292848 C - RASA2 Frame_Shift_Del p.T476Lfs*2 0.14 TCGA-55-8511-01 3 141692893 141692893 C A TFDP2 Silent p.L220L 0.11 TCGA-55-8511-01 3 146239808 146239808 C T PLSCR1 Missense_Mutation p.E130K 0.07 tolerated(0.07) benign(0.101) TCGA-55-8511-01 3 164776814 164776814 C A SI Missense_Mutation p.E445D 0.14 tolerated(1) benign(0.002) TCGA-55-8511-01 3 164908580 164908580 C G SLITRK3 Missense_Mutation p.R13S 0.09 deleterious(0.03) benign(0.051) TCGA-55-8511-01 3 165548805 165548805 G A BCHE Missense_Mutation p.T6I 0.11 tolerated_low_confidence(0.07) benign(0.002) TCGA-55-8511-01 3 167272542 167272542 C A WDR49 Silent p.G232G 0.19 TCGA-55-8511-01 3 167525119 167525119 A T SERPINI1 Silent p.T323T 0.17 TCGA-55-8511-01 3 178745568 178745568 G C ZMAT3 Missense_Mutation p.I141M 0.12 tolerated(0.15) probably_damaging(0.986) TCGA-55-8511-01 3 183056660 183056660 A T MCF2L2 Silent p.S138S 0.19 TCGA-55-8511-01 3 18393628 18393628 C A SATB1 Silent p.L545L 0.27 TCGA-55-8511-01 3 27760264 27760264 T G EOMES Missense_Mutation p.T427P 0.29 deleterious(0) probably_damaging(0.965) TCGA-55-8511-01 3 37125163 37125163 C A LRRFIP2 Missense_Mutation p.M414I 0.13 tolerated(0.16) benign(0.02) TCGA-55-8511-01 3 37125164 37125164 A T LRRFIP2 Missense_Mutation p.M414K 0.13 deleterious(0) possibly_damaging(0.756) TCGA-55-8511-01 3 47604241 47604241 C T CSPG5 Missense_Mutation p.S517N 0.09 tolerated(0.5) benign(0.024) TCGA-55-8511-01 3 48218926 48218926 C T CDC25A Missense_Mutation p.E231K 0.15 tolerated(0.21) benign(0.392) TCGA-55-8511-01 3 49053379 49053380 AG - DALRD3 Intron 0.17 TCGA-55-8511-01 3 50197159 50197159 C A SEMA3F Nonsense_Mutation p.S35* 0.08 TCGA-55-8511-01 3 50313250 50313250 G T LSMEM2 5'Flank 0.15 TCGA-55-8511-01 3 51696660 51696660 A T RAD54L2 Missense_Mutation p.M1210L 0.15 tolerated_low_confidence(0.42) benign(0) TCGA-55-8511-01 3 52551014 52551014 G A STAB1 Missense_Mutation p.A1460T 0.10 tolerated(0.49) benign(0.072) TCGA-55-8511-01 3 68782226 68782226 G A FAM19A4 3'UTR 0.15 TCGA-55-8511-01 3 89499364 89499364 C A EPHA3 Missense_Mutation p.P845H 0.08 deleterious(0) probably_damaging(1) TCGA-55-8511-01 3 89499398 89499398 G T EPHA3 Silent p.L856L 0.08 TCGA-55-8511-01 4 109784516 109784516 C T COL25A1 Missense_Mutation p.G371R 0.08 deleterious(0.01) probably_damaging(1) TCGA-55-8511-01 4 114251482 114251482 C A ANK2 Missense_Mutation p.P994Q 0.11 probably_damaging(1) TCGA-55-8511-01 4 134071181 134071181 C A PCDH10 5'UTR 0.27 TCGA-55-8511-01 4 15937468 15937468 G T FGFBP1 3'UTR 0.12 TCGA-55-8511-01 4 166946540 166946540 A G TLL1 Missense_Mutation p.Y372C 0.24 tolerated(0.06) benign(0.396) TCGA-55-8511-01 4 169433403 169433403 G A PALLD Missense_Mutation p.A250T 0.12 tolerated(0.49) benign(0.001) TCGA-55-8511-01 4 177116763 177116763 A G SPATA4 5'UTR 0.13 TCGA-55-8511-01 4 188924761 188924761 G T ZFP42 Missense_Mutation p.R267L 0.09 deleterious(0.04) possibly_damaging(0.775) TCGA-55-8511-01 4 1941556 1941556 A T WHSC1 Intron 0.19 TCGA-55-8511-01 4 22438236 22438236 C A GPR125 Missense_Mutation p.A372S 0.21 tolerated(0.22) possibly_damaging(0.664) TCGA-55-8511-01 4 3441287 3441287 A T RGS12 Missense_Mutation p.Q1407L 0.11 deleterious_low_confidence(0.04) benign(0.004) TCGA-55-8511-01 4 48114412 48114412 G C TXK Missense_Mutation p.P98A 0.22 tolerated(0.4) possibly_damaging(0.665) TCGA-55-8511-01 4 48550797 48550797 C T FRYL Missense_Mutation p.V1600M 0.17 deleterious(0.04) benign(0.395) TCGA-55-8511-01 4 48996821 48996821 G T CWH43 Missense_Mutation p.D233Y 0.17 deleterious(0.02) benign(0.391) TCGA-55-8511-01 4 52926589 52926589 A G SPATA18 Missense_Mutation p.N31S 0.20 tolerated(0.05) probably_damaging(0.953) TCGA-55-8511-01 4 53267 53267 T G ZNF595 5'UTR 0.08 TCGA-55-8511-01 4 53731603 53731603 T C RASL11B Silent p.Y126Y 0.13 TCGA-55-8511-01 4 57906997 57906997 C T IGFBP7 Nonsense_Mutation p.W193* 0.16 TCGA-55-8511-01 4 6114578 6114578 G T JAKMIP1 5'UTR 0.15 TCGA-55-8511-01 4 619760 619760 G A PDE6B Silent p.P115P 0.29 TCGA-55-8511-01 4 71510527 71510527 C T ENAM Silent p.T1128T 0.27 TCGA-55-8511-01 4 71655254 71655254 C T RUFY3 Missense_Mutation p.R428C 0.17 deleterious(0.01) probably_damaging(0.949) TCGA-55-8511-01 4 71693715 71693715 C A GRSF1 Missense_Mutation p.R330L 0.20 deleterious(0.01) possibly_damaging(0.554) TCGA-55-8511-01 4 74283816 74283816 C A ALB Silent p.V480V 0.17 TCGA-55-8511-01 4 7705100 7705100 T A SORCS2 Splice_Site p.X587_splice 0.28 TCGA-55-8511-01 4 89591018 89591018 G T HERC3 Missense_Mutation p.W547C 0.11 deleterious(0) probably_damaging(0.998) TCGA-55-8511-01 4 95508230 95508230 G T PDLIM5 Intron 0.16 TCGA-55-8511-01 5 114482782 114482782 G A TRIM36 Missense_Mutation p.T203I 0.33 tolerated(0.39) probably_damaging(0.945) TCGA-55-8511-01 5 1208893 1208893 G A SLC6A19 Missense_Mutation p.V79I 0.36 tolerated(0.45) benign(0.12) TCGA-55-8511-01 5 133897979 133897980 - A JADE2 Frame_Shift_Ins p.R260Afs*9 0.20 TCGA-55-8511-01 5 137481528 137481528 C T BRD8 Silent p.L1106L 0.18 TCGA-55-8511-01 5 140012311 140012311 G T CD14 Silent p.V86V 0.19 TCGA-55-8511-01 5 140202899 140202899 C A PCDHA5 Missense_Mutation p.S513R 0.31 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-55-8511-01 5 140242297 140242297 G A AC005609.1 3'UTR 0.12 TCGA-55-8511-01 5 140242942 140242942 G A AC005609.1 Missense_Mutation p.R12C 0.30 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-55-8511-01 5 140553567 140553567 C A PCDHB7 Missense_Mutation p.S384Y 0.27 tolerated_low_confidence(0.06) benign(0.106) TCGA-55-8511-01 5 140572808 140572808 T C PCDHB10 Missense_Mutation p.V228A 0.27 deleterious_low_confidence(0) benign(0.082) TCGA-55-8511-01 5 140746095 140746095 C T PCDHGA5 Missense_Mutation p.A733V 0.23 tolerated_low_confidence(0.26) benign(0.005) TCGA-55-8511-01 5 149771736 149771736 C T TCOF1 Silent p.L1172L 0.09 TCGA-55-8511-01 5 1880942 1880942 A T IRX4 Missense_Mutation p.F102I 0.34 tolerated(0.08) benign(0.045) TCGA-55-8511-01 5 19520855 19520855 C A CDH18 Missense_Mutation p.G475C 0.26 tolerated(0.17) possibly_damaging(0.695) TCGA-55-8511-01 5 24509923 24509923 G T CDH10 Silent p.L336L 0.15 TCGA-55-8511-01 5 26988458 26988458 G T CDH9 5'UTR 0.30 TCGA-55-8511-01 5 34929952 34929952 G C DNAJC21 Missense_Mutation p.V10L 0.30 deleterious(0.02) benign(0.101) TCGA-55-8511-01 5 35740331 35740331 G A SPEF2 Missense_Mutation p.D1098N 0.12 deleterious(0) probably_damaging(0.996) TCGA-55-8511-01 5 41039555 41039555 A G MROH2B Missense_Mutation p.C686R 0.36 tolerated(0.16) benign(0.162) TCGA-55-8511-01 5 484774 484774 C T SLC9A3 Missense_Mutation p.G265R 0.08 deleterious(0) probably_damaging(1) TCGA-55-8511-01 5 50683519 50683519 G T ISL1 Missense_Mutation p.R138S 0.26 tolerated(0.22) benign(0.004) TCGA-55-8511-01 5 5191805 5191805 A T ADAMTS16 Silent p.A405A 0.35 TCGA-55-8511-01 5 54281170 54281170 G T ESM1 Missense_Mutation p.A59E 0.17 deleterious(0) probably_damaging(1) TCGA-55-8511-01 5 5464364 5464364 G A KIAA0947 Silent p.L1639L 0.06 TCGA-55-8511-01 5 59982963 59982963 G A DEPDC1B Missense_Mutation p.A47V 0.08 deleterious(0.05) benign(0.054) TCGA-55-8511-01 5 65349925 65349925 T A ERBB2IP Missense_Mutation p.F927I 0.07 deleterious(0.02) probably_damaging(0.998) TCGA-55-8511-01 5 74973721 74973721 C G POC5 Missense_Mutation p.A488P 0.13 deleterious(0) probably_damaging(0.996) TCGA-55-8511-01 5 82815305 82815305 G A VCAN Missense_Mutation p.E394K 0.22 tolerated(1) benign(0.002) TCGA-55-8511-01 5 83239299 83239299 C A EDIL3 Missense_Mutation p.W461L 0.21 tolerated(0.16) probably_damaging(0.998) TCGA-55-8511-01 5 86627277 86627278 - T RASA1 Frame_Shift_Ins p.S219Ffs*4 0.17 TCGA-55-8511-01 5 90149268 90149268 C A GPR98 Missense_Mutation p.T5791K 0.14 benign(0.001) TCGA-55-8511-01 6 116879064 116879064 C A FAM26D Missense_Mutation p.P69H 0.21 deleterious(0) probably_damaging(1) TCGA-55-8511-01 6 119345389 119345389 C A FAM184A Missense_Mutation p.G250V 0.20 deleterious(0.04) benign(0.127) TCGA-55-8511-01 6 119345391 119345391 T G FAM184A Missense_Mutation p.E249D 0.20 tolerated(0.09) probably_damaging(0.99) TCGA-55-8511-01 6 123376974 123376974 G T CLVS2 Silent p.L233L 0.17 TCGA-55-8511-01 6 131926382 131926382 C G MED23 Missense_Mutation p.M537I 0.17 deleterious(0) probably_damaging(0.968) TCGA-55-8511-01 6 133783563 133783563 C A EYA4 Silent p.A176A 0.30 TCGA-55-8511-01 6 136599626 136599626 C A BCLAF1 Silent p.R131R 0.10 TCGA-55-8511-01 6 146269413 146269413 T C SHPRH Silent p.T352T 0.21 TCGA-55-8511-01 6 152553322 152553322 G A SYNE1 Nonsense_Mutation p.Q6931* 0.30 TCGA-55-8511-01 6 17632986 17632986 C T NUP153 Missense_Mutation p.E852K 0.17 deleterious(0) possibly_damaging(0.804) TCGA-55-8511-01 6 24576715 24576715 T A KIAA0319 Missense_Mutation p.I539L 0.20 tolerated(0.1) benign(0.075) TCGA-55-8511-01 6 25984013 25984013 C T TRIM38 3'UTR 0.25 TCGA-55-8511-01 6 29407912 29407912 C A OR10C1 Silent p.G40G 0.31 TCGA-55-8511-01 6 31525456 31525456 G A NFKBIL1 Missense_Mutation p.G129E 0.09 tolerated(0.47) possibly_damaging(0.814) TCGA-55-8511-01 6 32008281 32008281 C T CYP21A2 Silent p.L346L 0.20 TCGA-55-8511-01 6 32261340 32261340 C A C6orf10 Missense_Mutation p.K370N 0.16 tolerated(0.06) probably_damaging(0.991) TCGA-55-8511-01 6 34574444 34574444 C T C6orf106 Nonsense_Mutation p.W250* 0.20 TCGA-55-8511-01 6 36359543 36359543 C A PXT1 3'UTR 0.17 TCGA-55-8511-01 6 42237309 42237309 T C TRERF1 Missense_Mutation p.Y7C 0.11 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-55-8511-01 6 43268991 43268991 C A SLC22A7 Missense_Mutation p.Q316K 0.14 tolerated(0.96) benign(0.005) TCGA-55-8511-01 6 46111048 46111048 A G ENPP4 Missense_Mutation p.M345V 0.11 deleterious(0) probably_damaging(0.993) TCGA-55-8511-01 6 50011440 50011440 G T DEFB112 Missense_Mutation p.Q64K 0.28 tolerated(0.58) benign(0.149) TCGA-55-8511-01 6 50686846 50686846 G A TFAP2D Missense_Mutation p.G194D 0.14 tolerated(0.31) probably_damaging(0.959) TCGA-55-8511-01 6 50786681 50786681 A C TFAP2B Missense_Mutation p.Y26S 0.19 tolerated(0.36) benign(0.006) TCGA-55-8511-01 6 50791230 50791230 C A TFAP2B Missense_Mutation p.D64E 0.14 tolerated(0.27) benign(0.028) TCGA-55-8511-01 6 51524540 51524540 T C PKHD1 Missense_Mutation p.I3462V 0.15 tolerated(0.46) benign(0.114) TCGA-55-8511-01 6 52843113 52843113 T A GSTA4 3'UTR 0.11 TCGA-55-8511-01 6 56469747 56469747 C A DST Intron 0.14 TCGA-55-8511-01 6 56483305 56483305 C T DST Intron 0.15 TCGA-55-8511-01 6 64421820 64421820 G A PHF3 Missense_Mutation p.V1446M 0.08 deleterious(0) probably_damaging(0.999) TCGA-55-8511-01 6 69944923 69944923 G T BAI3 Splice_Site p.X870_splice 0.23 TCGA-55-8511-01 6 7211052 7211052 T G RREB1 Missense_Mutation p.H147Q 0.42 deleterious(0) probably_damaging(1) TCGA-55-8511-01 6 7230183 7230183 G C RREB1 Missense_Mutation p.E617D 0.50 deleterious(0.01) probably_damaging(0.99) TCGA-55-8511-01 6 74117251 74117251 C A DDX43 Missense_Mutation p.P317H 0.21 deleterious(0) probably_damaging(0.998) TCGA-55-8511-01 6 74481227 74481227 G A CD109 Missense_Mutation p.D584N 0.22 tolerated(0.66) benign(0.004) TCGA-55-8511-01 6 88854582 88854582 G A CNR1 Silent p.L138L 0.09 TCGA-55-8511-01 6 97720634 97720634 T C MMS22L Silent p.L184L 0.27 TCGA-55-8511-01 7 100469273 100469273 C T TRIP6 Missense_Mutation p.R370C 0.21 tolerated(0.22) benign(0.01) TCGA-55-8511-01 7 103130346 103130346 A G RELN Silent p.S3202S 0.20 TCGA-55-8511-01 7 106509092 106509092 G T PIK3CG Missense_Mutation p.R362S 0.16 deleterious(0) probably_damaging(0.995) TCGA-55-8511-01 7 108524502 108524502 G - C7orf66 Frame_Shift_Del p.A31Qfs*31 0.19 TCGA-55-8511-01 7 113518262 113518262 C - PPP1R3A Frame_Shift_Del p.G962Vfs*21 0.09 TCGA-55-8511-01 7 116371756 116371756 G A MET Missense_Mutation p.R412H 0.05 tolerated(0.44) benign(0.012) TCGA-55-8511-01 7 119915129 119915129 T A KCND2 Missense_Mutation p.L148Q 0.18 deleterious(0.04) probably_damaging(0.954) TCGA-55-8511-01 7 123514854 123514854 G T HYAL4 Nonsense_Mutation p.G332* 0.19 TCGA-55-8511-01 7 123514855 123514855 G T HYAL4 Missense_Mutation p.G332V 0.19 deleterious(0) probably_damaging(1) TCGA-55-8511-01 7 126086273 126086273 C G GRM8 Missense_Mutation p.A862P 0.16 deleterious(0.02) possibly_damaging(0.768) TCGA-55-8511-01 7 127240340 127240340 A T FSCN3 Missense_Mutation p.S462C 0.22 tolerated(0.11) possibly_damaging(0.789) TCGA-55-8511-01 7 130008431 130008431 C T CPA5 Missense_Mutation p.P435L 0.17 tolerated(0.9) possibly_damaging(0.73) TCGA-55-8511-01 7 131113905 131113905 G T MKLN1 Splice_Site p.X320_splice 0.21 TCGA-55-8511-01 7 140481411 140481411 C A BRAF Missense_Mutation p.G466V 0.19 deleterious(0) probably_damaging(0.936) TCGA-55-8511-01 7 142168798 142168798 G T TRBV5-4 Missense_Mutation p.A16E 0.22 deleterious(0.01) benign(0.027) TCGA-55-8511-01 7 142641481 142641481 G C KEL Missense_Mutation p.Q474E 0.21 tolerated(0.13) benign(0.1) TCGA-55-8511-01 7 143048832 143048832 C A CLCN1 Missense_Mutation p.P914H 0.14 tolerated_low_confidence(0.08) benign(0.182) TCGA-55-8511-01 7 143701373 143701373 C A OR6B1 Missense_Mutation p.T95K 0.20 tolerated(0.29) benign(0.021) TCGA-55-8511-01 7 143701435 143701435 G T OR6B1 Missense_Mutation p.A116S 0.22 tolerated(0.08) possibly_damaging(0.666) TCGA-55-8511-01 7 149486421 149486421 C T SSPO RNA 0.22 TCGA-55-8511-01 7 149524884 149524884 A T SSPO RNA 0.19 TCGA-55-8511-01 7 150773810 150773810 C A FASTK 3'UTR 0.14 TCGA-55-8511-01 7 151859670 151859670 G A KMT2C Silent p.V3664V 0.18 TCGA-55-8511-01 7 151962159 151962159 C A KMT2C Missense_Mutation p.W383L 0.08 probably_damaging(0.999) TCGA-55-8511-01 7 154564584 154564584 A T DPP6 Silent p.L356L 0.28 TCGA-55-8511-01 7 158451030 158451030 C A NCAPG2 Missense_Mutation p.S687I 0.14 deleterious(0) probably_damaging(0.997) TCGA-55-8511-01 7 18875119 18875119 G A HDAC9 Silent p.Q832Q 0.15 TCGA-55-8511-01 7 23221611 23221611 G T NUPL2 5'UTR 0.26 TCGA-55-8511-01 7 2472403 2472403 G A CHST12 Silent p.P43P 0.15 TCGA-55-8511-01 7 27196050 27196050 C T HOXA7 Missense_Mutation p.G39S 0.19 tolerated(0.2) benign(0.09) TCGA-55-8511-01 7 28848898 28848898 C T CREB5 Missense_Mutation p.P374L 0.08 deleterious(0) unknown(0) TCGA-55-8511-01 7 28858945 28858945 G T CREB5 3'UTR 0.19 TCGA-55-8511-01 7 36460277 36460277 A C ANLN Missense_Mutation p.K696T 0.16 deleterious(0.05) possibly_damaging(0.901) TCGA-55-8511-01 7 4011183 4011183 C A SDK1 Missense_Mutation p.D600E 0.10 deleterious(0) probably_damaging(0.971) TCGA-55-8511-01 7 40277289 40277289 G T SUGCT Silent p.S187S 0.25 TCGA-55-8511-01 7 44153412 44153412 C A AEBP1 Missense_Mutation p.P1010H 0.20 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-55-8511-01 7 45753346 45753346 C A ADCY1 Silent p.R1038R 0.21 TCGA-55-8511-01 7 48431674 48431674 G T ABCA13 Silent p.L3937L 0.18 TCGA-55-8511-01 7 53103594 53103594 T A POM121L12 Missense_Mutation p.L77H 0.14 deleterious(0.02) probably_damaging(0.966) TCGA-55-8511-01 7 55863631 55863631 T A SEPT14 Missense_Mutation p.K425M 0.20 deleterious(0) probably_damaging(0.94) TCGA-55-8511-01 7 57509956 57509956 G T ZNF716 5'UTR 0.25 TCGA-55-8511-01 7 57522285 57522285 C A ZNF716 Silent p.V53V 0.11 TCGA-55-8511-01 7 77026305 77026305 G A GSAP Nonsense_Mutation p.Q121* 0.22 TCGA-55-8511-01 7 80091624 80091624 C A GNAT3 Missense_Mutation p.R242I 0.17 deleterious(0) probably_damaging(1) TCGA-55-8511-01 7 82072757 82072757 G C CACNA2D1 Missense_Mutation p.L7V 0.13 tolerated(0.18) probably_damaging(0.953) TCGA-55-8511-01 7 89749127 89749127 G T RP5-1121E10.2 Intron 0.08 TCGA-55-8511-01 7 94037200 94037200 A C COL1A2 Missense_Mutation p.Q212H 0.08 unknown(0) TCGA-55-8511-01 7 94055338 94055338 G A COL1A2 Missense_Mutation p.G991D 0.19 unknown(0) TCGA-55-8511-01 7 98249012 98249012 C A NPTX2 Missense_Mutation p.L162I 0.23 deleterious(0.04) possibly_damaging(0.831) TCGA-55-8511-01 7 98563387 98563387 A G TRRAP Missense_Mutation p.M2342V 0.22 benign(0.024) TCGA-55-8511-01 8 100513968 100513968 G T VPS13B Missense_Mutation p.L1308F 0.11 deleterious(0.04) probably_damaging(0.986) TCGA-55-8511-01 8 100533213 100533213 T A VPS13B Missense_Mutation p.S1599T 0.10 tolerated(0.59) benign(0.057) TCGA-55-8511-01 8 103277369 103277369 C G UBR5 Missense_Mutation p.K2520N 0.30 deleterious(0.01) probably_damaging(0.968) TCGA-55-8511-01 8 103277449 103277449 C T UBR5 Missense_Mutation p.D2494N 0.31 tolerated(0.06) probably_damaging(0.93) TCGA-55-8511-01 8 103845432 103845432 G A AZIN1 Silent p.I252I 0.11 TCGA-55-8511-01 8 108913234 108913234 G T RSPO2 3'UTR 0.38 TCGA-55-8511-01 8 113326250 113326250 G T CSMD3 Silent p.S2527S 0.04 TCGA-55-8511-01 8 113326827 113326827 T G CSMD3 Missense_Mutation p.E2460D 0.11 deleterious(0.05) benign(0.174) TCGA-55-8511-01 8 113562934 113562934 A T CSMD3 Nonsense_Mutation p.Y1510* 0.26 TCGA-55-8511-01 8 113562944 113562944 G C CSMD3 Missense_Mutation p.T1507R 0.26 deleterious(0) probably_damaging(0.997) TCGA-55-8511-01 8 113563042 113563042 A T CSMD3 Silent p.G1474G 0.28 TCGA-55-8511-01 8 133899422 133899422 T A TG Missense_Mutation p.V602E 0.46 deleterious(0) possibly_damaging(0.88) TCGA-55-8511-01 8 139642992 139642992 C A COL22A1 Splice_Site p.X1204_splice 0.42 TCGA-55-8511-01 8 144997352 144997352 C G PLEC Missense_Mutation p.A2386P 0.29 possibly_damaging(0.824) TCGA-55-8511-01 8 144998613 144998613 C A PLEC Silent p.R1965R 0.54 TCGA-55-8511-01 8 145151062 145151062 G C CYC1 Missense_Mutation p.C121S 0.43 deleterious(0) probably_damaging(0.957) TCGA-55-8511-01 8 21985314 21985314 G A HR Missense_Mutation p.P214L 0.29 tolerated(1) benign(0) TCGA-55-8511-01 8 24771966 24771966 G T NEFM Silent p.L220L 0.12 TCGA-55-8511-01 8 25261236 25261236 G A DOCK5 Missense_Mutation p.D1697N 0.15 tolerated(0.09) benign(0.24) TCGA-55-8511-01 8 25702105 25702105 T A EBF2 3'UTR 0.14 TCGA-55-8511-01 8 3081372 3081372 G T CSMD1 Missense_Mutation p.L1455M 0.19 probably_damaging(0.913) TCGA-55-8511-01 8 3216750 3216750 A G CSMD1 Silent p.R1076R 0.11 TCGA-55-8511-01 8 39634647 39634647 C T ADAM2 Missense_Mutation p.V309I 0.29 tolerated(0.33) possibly_damaging(0.699) TCGA-55-8511-01 8 41812836 41812836 G T KAT6A Missense_Mutation p.P526T 0.06 possibly_damaging(0.748) TCGA-55-8511-01 8 53025742 53025742 C T ST18 3'UTR 0.35 TCGA-55-8511-01 8 53570230 53570230 T A RB1CC1 Missense_Mutation p.D720V 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-8511-01 8 70594426 70594426 C G SLCO5A1 Missense_Mutation p.S592T 0.26 tolerated(0.13) benign(0.005) TCGA-55-8511-01 8 72129205 72129205 G T EYA1 Missense_Mutation p.D398E 0.27 deleterious(0.02) benign(0.015) TCGA-55-8511-01 8 77766144 77766144 G A ZFHX4 Silent p.T2329T 0.04 TCGA-55-8511-01 8 77766226 77766226 G A ZFHX4 Missense_Mutation p.D2357N 0.37 probably_damaging(0.97) TCGA-55-8511-01 8 77767000 77767000 G A ZFHX4 Missense_Mutation p.E2615K 0.36 possibly_damaging(0.848) TCGA-55-8511-01 8 77767635 77767635 C A ZFHX4 Silent p.T2826T 0.34 TCGA-55-8511-01 8 89180020 89180020 C A MMP16 Missense_Mutation p.S196I 0.26 deleterious(0) probably_damaging(1) TCGA-55-8511-01 8 92401566 92401566 A G SLC26A7 Missense_Mutation p.E559G 0.08 tolerated(0.44) benign(0.002) TCGA-55-8511-01 8 95264416 95264416 C A GEM Missense_Mutation p.Q148H 0.13 deleterious(0.01) possibly_damaging(0.551) TCGA-55-8511-01 8 95839953 95839953 A T INTS8 Silent p.A150A 0.07 TCGA-55-8511-01 9 102595581 102595581 C G NR4A3 Missense_Mutation p.L378V 0.08 deleterious(0) probably_damaging(1) TCGA-55-8511-01 9 113445018 113445018 G T MUSK Missense_Mutation p.M48I 0.30 tolerated_low_confidence(0.9) benign(0.021) TCGA-55-8511-01 9 113510005 113510005 T C MUSK Missense_Mutation p.Y280H 0.25 deleterious(0) possibly_damaging(0.719) TCGA-55-8511-01 9 116971741 116971741 G A COL27A1 Intron 0.17 TCGA-55-8511-01 9 121976308 121976308 C G BRINP1 Missense_Mutation p.E271Q 0.21 tolerated(0.31) benign(0.174) TCGA-55-8511-01 9 125330149 125330149 T C OR1L8 Missense_Mutation p.E203G 0.25 tolerated(0.17) probably_damaging(0.994) TCGA-55-8511-01 9 130206958 130206958 C G ZNF79 Missense_Mutation p.H327D 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-8511-01 9 137734165 137734165 G T COL5A1 3'UTR 0.18 TCGA-55-8511-01 9 139793300 139793300 C A TRAF2 Silent p.A36A 0.17 TCGA-55-8511-01 9 17409325 17409325 G T CNTLN Nonsense_Mutation p.G884* 0.09 TCGA-55-8511-01 9 34107400 34107400 G T DCAF12 Missense_Mutation p.A166D 0.12 deleterious(0.01) probably_damaging(0.947) TCGA-55-8511-01 9 5769049 5769049 G C KIAA1432 Missense_Mutation p.D1073H 0.10 tolerated(0.1) benign(0.176) TCGA-55-8511-01 9 77377622 77377622 G T TRPM6 Missense_Mutation p.T1322K 0.24 tolerated_low_confidence(0.17) benign(0.003) TCGA-55-8511-01 9 79635320 79635320 C A FOXB2 Silent p.G250G 0.43 TCGA-55-8511-01 9 8460562 8460562 C A PTPRD Missense_Mutation p.A1242S 0.14 tolerated(0.16) probably_damaging(0.989) TCGA-55-8511-01 9 8521421 8521421 C - PTPRD Frame_Shift_Del p.A273Qfs*4 0.11 TCGA-55-8511-01 9 8528747 8528747 C T PTPRD Missense_Mutation p.D129N 0.16 deleterious(0.01) probably_damaging(0.99) TCGA-55-8511-01 9 96054672 96054672 C T WNK2 Silent p.V1710V 0.08 TCGA-55-8511-01 9 96438008 96438008 G C PHF2 Missense_Mutation p.E923D 0.13 tolerated(0.05) unknown(0) TCGA-55-8511-01 9 99711965 99711965 C A HIATL2 Splice_Site p.X90_splice 0.21 TCGA-55-8511-01 X 101770103 101770103 G C TMSB15A 5'UTR 0.22 TCGA-55-8511-01 X 111698207 111698207 C G ZCCHC16 Missense_Mutation p.A84G 0.19 deleterious(0.02) benign(0.098) TCGA-55-8511-01 X 111698859 111698859 G A ZCCHC16 Silent p.P301P 0.32 TCGA-55-8511-01 X 125299371 125299371 C G DCAF12L2 Silent p.L179L 0.28 TCGA-55-8511-01 X 12734879 12734879 G C FRMPD4 Missense_Mutation p.Q767H 0.25 deleterious(0.04) benign(0.396) TCGA-55-8511-01 X 130411124 130411124 G A IGSF1 Silent p.C804C 0.28 TCGA-55-8511-01 X 132161322 132161322 C T USP26 Silent p.V309V 0.20 TCGA-55-8511-01 X 135593335 135593335 A T HTATSF1 Missense_Mutation p.E477D 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.476) TCGA-55-8511-01 X 13607688 13607688 G C EGFL6 Missense_Mutation p.G30R 0.22 tolerated(1) benign(0.187) TCGA-55-8511-01 X 140995207 140995207 C A MAGEC1 Missense_Mutation p.Q673K 0.28 deleterious_low_confidence(0.01) benign(0.042) TCGA-55-8511-01 X 142717435 142717435 G A SLITRK4 Missense_Mutation p.P497L 0.27 tolerated(0.17) possibly_damaging(0.617) TCGA-55-8511-01 X 151815586 151815586 G C GABRQ Missense_Mutation p.V162L 0.17 tolerated(0.25) benign(0.083) TCGA-55-8511-01 X 153459052 153459052 C A OPN1MW Missense_Mutation p.H300N 0.25 tolerated(0.13) benign(0.057) TCGA-55-8511-01 X 1585188 1585188 G A P2RY8 Silent p.H88H 0.37 TCGA-55-8511-01 X 18323300 18323300 C A SCML2 Silent p.V174V 0.11 TCGA-55-8511-01 X 21896619 21896619 C A MBTPS2 Missense_Mutation p.T357K 0.08 deleterious(0) benign(0.021) TCGA-55-8511-01 X 27766141 27766141 G T DCAF8L2 Missense_Mutation p.A377S 0.13 tolerated(0.18) benign(0.279) TCGA-55-8511-01 X 27997016 27997016 T G DCAF8L1 3'UTR 0.18 TCGA-55-8511-01 X 2924702 2924702 C A ARSH Missense_Mutation p.L17I 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-55-8511-01 X 30260542 30260542 C A MAGEB4 Missense_Mutation p.A97D 0.29 tolerated(0.07) benign(0.278) TCGA-55-8511-01 X 30269188 30269188 G T MAGEB1 Missense_Mutation p.W193L 0.08 tolerated(0.35) benign(0.01) TCGA-55-8511-01 X 30578220 30578220 G - CXorf21 Frame_Shift_Del p.Q85Rfs*50 0.14 TCGA-55-8511-01 X 32305746 32305746 G T DMD Missense_Mutation p.Q2064K 0.17 benign(0.002) TCGA-55-8511-01 X 32382785 32382785 G - DMD Frame_Shift_Del p.H1690Tfs*31 0.12 TCGA-55-8511-01 X 32383258 32383258 C - DMD Frame_Shift_Del p.G1635Efs*4 0.12 TCGA-55-8511-01 X 32662312 32662312 T C DMD Missense_Mutation p.Q423R 0.18 benign(0.263) TCGA-55-8511-01 X 32662313 32662313 G T DMD Missense_Mutation p.Q423K 0.18 benign(0.179) TCGA-55-8511-01 X 47104811 47104811 G A USP11 Missense_Mutation p.A777T 0.48 tolerated(0.83) benign(0.034) TCGA-55-8511-01 X 49068419 49068419 T A CACNA1F Missense_Mutation p.T1358S 0.54 tolerated(0.08) benign(0.001) TCGA-55-8511-01 X 49454059 49454059 C A PAGE1 Missense_Mutation p.G127V 0.59 tolerated(0.25) probably_damaging(0.988) TCGA-55-8511-01 X 55050192 55050192 G C ALAS2 Missense_Mutation p.P138R 0.12 tolerated(0.06) benign(0.035) TCGA-55-8511-01 X 65819693 65819693 A T EDA2R Missense_Mutation p.L197Q 0.31 deleterious(0) probably_damaging(0.973) TCGA-55-8511-01 X 69282926 69282926 G A OTUD6A Silent p.E184E 0.33 TCGA-55-8511-01 X 79282807 79282807 C A TBX22 Missense_Mutation p.T284N 0.26 deleterious(0.01) benign(0.02) TCGA-55-8511-01 X 83129030 83129030 G A CYLC1 Silent p.K438K 0.19 TCGA-55-8511-01 X 91090976 91090976 A T PCDH11X Missense_Mutation p.Y158F 0.22 tolerated(0.59) benign(0.174) TCGA-55-8511-01 X 91133468 91133468 C G PCDH11X Missense_Mutation p.D743E 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-55-8511-01 X 91873765 91873765 C T PCDH11X Silent p.C1290C 0.23 TCGA-55-8511-01 X 99852500 99852500 G C TNMD Splice_Site p.X142_splice 0.19 TCGA-55-8512-01 10 124803922 124803922 A G ACADSB Missense_Mutation p.N274S 0.17 tolerated(0.09) benign(0.008) TCGA-55-8512-01 10 16526412 16526412 C A PTER Missense_Mutation p.T10N 0.06 deleterious(0) probably_damaging(1) TCGA-55-8512-01 10 18276535 18276535 C A SLC39A12 Silent p.A408A 0.18 TCGA-55-8512-01 10 42928781 42928781 G T CCNYL2 RNA 0.16 TCGA-55-8512-01 10 48429408 48429408 G A GDF10 Missense_Mutation p.R160C 0.20 deleterious(0) possibly_damaging(0.908) TCGA-55-8512-01 11 18010293 18010293 T A SERGEF Missense_Mutation p.E232V 0.10 deleterious(0.02) probably_damaging(0.969) TCGA-55-8512-01 11 43284459 43284459 T A HNRNPKP3 RNA 0.21 TCGA-55-8512-01 11 48238706 48238706 G T OR4B1 Silent p.V115V 0.17 TCGA-55-8512-01 12 11546821 11546821 C T PRB2 Missense_Mutation p.G64E 0.17 tolerated(0.13) unknown(0) TCGA-55-8512-01 12 125609323 125609323 T A AACS Intron 0.17 TCGA-55-8512-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.22 deleterious(0) possibly_damaging(0.479) TCGA-55-8512-01 13 35733991 35733991 C T NBEA Missense_Mutation p.S1228L 0.22 tolerated_low_confidence(0.24) benign(0.002) TCGA-55-8512-01 15 62948180 62948180 A T TLN2 Missense_Mutation p.Q185H 0.13 deleterious(0) probably_damaging(0.949) TCGA-55-8512-01 15 75146963 75146963 C T SCAMP2 Missense_Mutation p.A29T 0.20 tolerated(0.6) benign(0.004) TCGA-55-8512-01 16 58571924 58571924 G T CNOT1 Missense_Mutation p.A1762D 0.26 deleterious(0) possibly_damaging(0.899) TCGA-55-8512-01 16 745886 745889 TCCA - FBXL16 Frame_Shift_Del p.L223Rfs*17 0.17 TCGA-55-8512-01 17 58260567 58260567 C T USP32 Missense_Mutation p.S1361N 0.11 tolerated_low_confidence(0.21) probably_damaging(0.966) TCGA-55-8512-01 17 8926266 8926266 C T NTN1 Silent p.P192P 0.13 TCGA-55-8512-01 19 1080515 1080515 G A HMHA1 Silent p.S643S 0.17 TCGA-55-8512-01 19 4292689 4292689 G T TMIGD2 Silent p.P252P 0.30 TCGA-55-8512-01 19 49261454 49261454 C A FGF21 Silent p.R203R 0.20 TCGA-55-8512-01 19 57326385 57326386 TG - PEG3 Frame_Shift_Del p.H1142Ffs*22 0.18 TCGA-55-8512-01 1 47746582 47746582 G A STIL Silent p.P516P 0.21 TCGA-55-8512-01 20 2591142 2591142 C G TMC2 Missense_Mutation p.H497Q 0.25 deleterious(0) probably_damaging(0.938) TCGA-55-8512-01 20 37195756 37195756 A G RALGAPB Missense_Mutation p.N1279D 0.21 tolerated(0.2) benign(0.068) TCGA-55-8512-01 20 39744042 39744042 A G TOP1 Missense_Mutation p.N557S 0.13 tolerated(0.06) benign(0.039) TCGA-55-8512-01 21 34922052 34922052 G T SON Missense_Mutation p.R172I 0.14 benign(0.308) TCGA-55-8512-01 22 21377274 21377274 G T P2RX6 Missense_Mutation p.R169S 0.22 tolerated(0.3) benign(0.035) TCGA-55-8512-01 2 108507243 108507243 G A RGPD4 3'UTR 0.20 TCGA-55-8512-01 2 11925195 11925195 C T LPIN1 Silent p.I563I 0.12 TCGA-55-8512-01 2 162719534 162719534 G A SLC4A10 Missense_Mutation p.G243D 0.17 deleterious(0) probably_damaging(0.994) TCGA-55-8512-01 3 146309605 146309605 G T PLSCR5 Missense_Mutation p.L173M 0.19 deleterious(0.01) possibly_damaging(0.863) TCGA-55-8512-01 3 62570947 62570947 A G CADPS Missense_Mutation p.M497T 0.11 deleterious(0) benign(0.042) TCGA-55-8512-01 4 166946522 166946522 C G TLL1 Missense_Mutation p.P366R 0.15 deleterious(0.01) possibly_damaging(0.812) TCGA-55-8512-01 4 166946523 166946523 C A TLL1 Silent p.P366P 0.15 TCGA-55-8512-01 5 171520560 171520560 C A STK10 Silent p.L470L 0.10 TCGA-55-8512-01 5 35072752 35072752 C A PRLR Silent p.L156L 0.13 TCGA-55-8512-01 5 35072753 35072753 A T PRLR Missense_Mutation p.L156Q 0.13 tolerated(0.08) benign(0.025) TCGA-55-8512-01 5 74680478 74680478 G C COL4A3BP Missense_Mutation p.Q621E 0.17 deleterious(0.01) possibly_damaging(0.523) TCGA-55-8512-01 6 137466617 137466617 A G IL22RA2 3'UTR 0.25 TCGA-55-8512-01 6 149982850 149982850 T G LATS1 3'UTR 0.20 TCGA-55-8512-01 6 24570231 24570231 G A KIAA0319 Missense_Mutation p.P631S 0.24 deleterious(0) probably_damaging(0.954) TCGA-55-8512-01 6 56350197 56350197 C A DST Missense_Mutation p.W4417C 0.30 probably_damaging(1) TCGA-55-8512-01 6 85446903 85446903 T A TBX18 Missense_Mutation p.T442S 0.22 tolerated(0.78) benign(0.003) TCGA-55-8512-01 7 17834022 17834022 G C SNX13 Intron 0.27 TCGA-55-8512-01 7 26224975 26224975 G C NFE2L3 Missense_Mutation p.E553Q 0.23 deleterious(0.02) probably_damaging(0.98) TCGA-55-8512-01 8 104897787 104897787 C G RIMS2 Nonsense_Mutation p.Y320* 0.13 TCGA-55-8512-01 8 113326251 113326251 G T CSMD3 Missense_Mutation p.S2527Y 0.14 tolerated(0.09) probably_damaging(0.961) TCGA-55-8512-01 8 3889532 3889532 A G CSMD1 Missense_Mutation p.Y169H 0.15 probably_damaging(0.999) TCGA-55-8512-01 8 52321669 52321669 C A PXDNL Missense_Mutation p.D839Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-8512-01 9 139697163 139697163 G A CCDC183 Silent p.V197V 0.20 TCGA-55-8512-01 X 127185636 127185636 C A ACTRT1 Missense_Mutation p.A184S 0.35 deleterious(0.01) probably_damaging(0.918) TCGA-55-8512-01 X 1719905 1719905 C T AKAP17A Silent p.H502H 0.20 TCGA-55-8513-01 19 8131015 8131015 C T FBN3 Missense_Mutation p.V2740I 0.07 tolerated(0.4) benign(0.014) TCGA-55-8513-01 1 109271371 109271371 G A FNDC7 Missense_Mutation p.G496E 0.05 deleterious(0.03) probably_damaging(1) TCGA-55-8513-01 1 236141178 236141178 C T NID1 Missense_Mutation p.E1245K 0.05 deleterious(0) possibly_damaging(0.776) TCGA-55-8513-01 20 422352 422352 A C TBC1D20 Intron 0.06 TCGA-55-8513-01 2 179579037 179579037 C T TTN Missense_Mutation p.A8822T 0.05 TCGA-55-8513-01 3 49395232 49395232 G A GPX1 Intron 0.07 TCGA-55-8513-01 4 74357779 74357779 C T AFM Missense_Mutation p.A345V 0.05 tolerated(0.16) benign(0.438) TCGA-55-8513-01 6 112021448 112021448 G A FYN Missense_Mutation p.R241C 0.06 tolerated(0.06) benign(0.135) TCGA-55-8514-01 10 105139429 105139429 G T TAF5 Missense_Mutation p.G393V 0.67 tolerated(0.29) benign(0.005) TCGA-55-8514-01 10 119026307 119026307 C A SLC18A2 Missense_Mutation p.A352E 0.58 deleterious(0) possibly_damaging(0.694) TCGA-55-8514-01 10 126716014 126716014 C A CTBP2 Silent p.L105L 0.41 TCGA-55-8514-01 10 17157487 17157487 G A CUBN Nonsense_Mutation p.R235* 0.48 TCGA-55-8514-01 10 18122662 18122662 G T MRC1 Silent p.P224P 0.71 TCGA-55-8514-01 10 25877971 25877971 T C GPR158 Missense_Mutation p.C597R 0.26 deleterious(0) probably_damaging(0.994) TCGA-55-8514-01 10 26377323 26377323 C A MYO3A Silent p.I517I 0.37 TCGA-55-8514-01 10 44874051 44874051 C A CXCL12 Intron 0.36 TCGA-55-8514-01 10 46222881 46222881 C T FAM21C Missense_Mutation p.P7L 0.28 deleterious_low_confidence(0.03) possibly_damaging(0.676) TCGA-55-8514-01 10 96580312 96580312 C T CYP2C19 Silent p.D293D 0.26 TCGA-55-8514-01 11 1102165 1102165 G T MUC2 Missense_Mutation p.A2601S 0.29 unknown(0) TCGA-55-8514-01 11 111958606 111958606 C T SDHD Silent p.V26V 0.13 TCGA-55-8514-01 11 118972225 118972225 G C DPAGT1 Missense_Mutation p.N47K 0.37 tolerated(0.1) possibly_damaging(0.662) TCGA-55-8514-01 11 125618506 125618506 C A PATE1 Missense_Mutation p.P87T 0.33 tolerated(0.06) benign(0.361) TCGA-55-8514-01 11 129795005 129795005 C A PRDM10 Silent p.R554R 0.31 TCGA-55-8514-01 11 14535990 14535990 C A PSMA1 Missense_Mutation p.R107I 0.44 deleterious(0.02) benign(0.156) TCGA-55-8514-01 11 21596589 21596589 C A NELL1 3'UTR 0.41 TCGA-55-8514-01 11 2182185 2182185 C G INS-IGF2 Missense_Mutation p.R6P 0.40 tolerated_low_confidence(0.16) unknown(0) TCGA-55-8514-01 11 2182186 2182186 G C INS-IGF2 Missense_Mutation p.R6G 0.39 deleterious_low_confidence(0.01) unknown(0) TCGA-55-8514-01 11 27379014 27379014 C A CCDC34 Missense_Mutation p.W145L 0.28 deleterious(0) probably_damaging(1) TCGA-55-8514-01 11 27379015 27379015 A T CCDC34 Missense_Mutation p.W145R 0.27 deleterious(0.04) probably_damaging(1) TCGA-55-8514-01 11 33667421 33667421 G T KIAA1549L Missense_Mutation p.A1570S 0.36 tolerated(0.1) possibly_damaging(0.495) TCGA-55-8514-01 11 4608123 4608123 G T OR52I2 Missense_Mutation p.M27I 0.32 deleterious(0.02) benign(0.014) TCGA-55-8514-01 11 49974506 49974506 G A OR4C13 Missense_Mutation p.D178N 0.27 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-55-8514-01 11 5254117 5254117 A C HBD 3'UTR 0.31 TCGA-55-8514-01 11 55032434 55032434 A C TRIM48 Missense_Mutation p.M35L 0.24 tolerated(1) benign(0.003) TCGA-55-8514-01 11 55405983 55405983 C T OR4P4 Silent p.T50T 0.27 TCGA-55-8514-01 11 55563896 55563896 C A OR5D14 Missense_Mutation p.P289T 0.20 deleterious(0) possibly_damaging(0.789) TCGA-55-8514-01 11 56128228 56128228 G A OR8J1 Missense_Mutation p.C169Y 0.28 deleterious(0) probably_damaging(1) TCGA-55-8514-01 11 60531339 60531339 C A MS4A15 Missense_Mutation p.P45T 0.35 tolerated(0.08) benign(0.004) TCGA-55-8514-01 11 60637855 60637855 T A ZP1 Missense_Mutation p.C245S 0.42 deleterious(0) probably_damaging(0.999) TCGA-55-8514-01 11 61017423 61017423 C T PGA5 Silent p.P318P 0.16 TCGA-55-8514-01 11 61722625 61722625 C A BEST1 Missense_Mutation p.L7M 0.36 tolerated(0.09) benign(0.381) TCGA-55-8514-01 11 63173978 63173978 C A SLC22A9 Missense_Mutation p.N361K 0.16 tolerated(0.3) benign(0.216) TCGA-55-8514-01 11 64428238 64428238 C A NRXN2 Silent p.R724R 0.29 TCGA-55-8514-01 11 66391825 66391825 C T RBM14 Nonsense_Mutation p.Q160* 0.32 TCGA-55-8514-01 11 67412315 67412315 C A ACY3 Missense_Mutation p.M220I 0.39 tolerated(1) benign(0.005) TCGA-55-8514-01 11 6891465 6891465 G T OR10A2 Missense_Mutation p.K160N 0.29 tolerated(0.05) benign(0.018) TCGA-55-8514-01 11 76371843 76371843 G - LRRC32 Frame_Shift_Del p.P265Rfs*6 0.25 TCGA-55-8514-01 11 7847399 7847399 C A OR5P3 Missense_Mutation p.G41C 0.26 deleterious(0) probably_damaging(0.988) TCGA-55-8514-01 11 82561106 82561106 C A PRCP Missense_Mutation p.A222S 0.35 deleterious(0.03) probably_damaging(0.992) TCGA-55-8514-01 11 94134465 94134465 C A GPR83 5'UTR 0.10 TCGA-55-8514-01 11 95712320 95712320 G - MAML2 Frame_Shift_Del p.P1088Lfs*19 0.12 TCGA-55-8514-01 12 103310929 103310929 G A PAH 5'UTR 0.64 TCGA-55-8514-01 12 104089338 104089338 C T STAB2 Missense_Mutation p.P1129L 0.53 deleterious(0) probably_damaging(1) TCGA-55-8514-01 12 131456063 131456063 T - GPR133 Frame_Shift_Del p.L84Sfs*71 0.40 TCGA-55-8514-01 12 22680723 22680723 T A C2CD5 Missense_Mutation p.D94V 0.62 deleterious(0.01) benign(0.402) TCGA-55-8514-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.31 deleterious(0.02) possibly_damaging(0.773) TCGA-55-8514-01 12 27234351 27234351 G A C12orf71 Missense_Mutation p.S189F 0.51 tolerated(0.07) probably_damaging(0.98) TCGA-55-8514-01 12 49447387 49447387 C T KMT2D Silent p.E237E 0.50 TCGA-55-8514-01 12 53723141 53723141 C T SP7 Missense_Mutation p.G29S 0.53 tolerated(1) benign(0.005) TCGA-55-8514-01 12 80746075 80746075 G C OTOGL Missense_Mutation p.V1747L 0.54 deleterious(0.04) probably_damaging(0.998) TCGA-55-8514-01 12 9307306 9307306 G T PZP Missense_Mutation p.P1227Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-55-8514-01 13 101881765 101881765 G T NALCN Missense_Mutation p.D535E 0.53 tolerated(0.42) benign(0.18) TCGA-55-8514-01 13 109779780 109779780 C T MYO16 Silent p.L1289L 0.56 TCGA-55-8514-01 13 25745118 25745118 C A AMER2 Missense_Mutation p.A214S 0.27 tolerated(0.68) benign(0.008) TCGA-55-8514-01 13 28562684 28562684 C A URAD Missense_Mutation p.A31S 0.31 deleterious(0.04) possibly_damaging(0.725) TCGA-55-8514-01 13 29598755 29598755 C G MTUS2 5'UTR 0.16 TCGA-55-8514-01 13 61988044 61988044 C A PCDH20 Missense_Mutation p.S63I 0.19 deleterious(0) probably_damaging(0.959) TCGA-55-8514-01 13 73293113 73293113 G A MZT1 Missense_Mutation p.R68C 0.24 deleterious(0) probably_damaging(0.966) TCGA-55-8514-01 13 73372039 73372053 TTCAAGGTTCGCTTC - PIBF1 Splice_Site p.X185_splice 0.13 TCGA-55-8514-01 14 105409841 105409841 G A AHNAK2 Missense_Mutation p.P3983S 0.58 benign(0.335) TCGA-55-8514-01 14 105418405 105418405 C A AHNAK2 Missense_Mutation p.S1128I 0.47 possibly_damaging(0.566) TCGA-55-8514-01 14 20248846 20248846 G T OR4M1 Missense_Mutation p.R122L 0.16 deleterious(0.01) benign(0.012) TCGA-55-8514-01 14 21967720 21967720 A C METTL3 Missense_Mutation p.I456M 0.43 deleterious(0) probably_damaging(0.997) TCGA-55-8514-01 14 23851721 23851721 C T MYH6 Silent p.E1904E 0.26 TCGA-55-8514-01 14 50472328 50472328 G A C14orf182 Missense_Mutation p.P64S 0.50 tolerated_low_confidence(0.08) benign(0.008) TCGA-55-8514-01 14 55510836 55510836 G T SOCS4 Silent p.G359G 0.29 TCGA-55-8514-01 14 61447739 61447739 C A TRMT5 5'UTR 0.12 TCGA-55-8514-01 14 63447766 63447766 C T KCNH5 Missense_Mutation p.V256I 0.29 tolerated(0.38) benign(0.149) TCGA-55-8514-01 14 65197753 65197753 C T PLEKHG3 Intron 0.11 TCGA-55-8514-01 14 94084613 94084613 C T UNC79 Nonsense_Mutation p.Q1257* 0.56 TCGA-55-8514-01 14 96858534 96858534 A T AK7 Missense_Mutation p.I15F 0.51 tolerated_low_confidence(0.3) benign(0.07) TCGA-55-8514-01 15 23441132 23441132 G T AC100757.1 5'Flank 0.05 TCGA-55-8514-01 15 24924279 24924279 C A NPAP1 Missense_Mutation p.P1089T 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.795) TCGA-55-8514-01 15 25488670 25488670 C A SNORD115-40 5'Flank 0.41 TCGA-55-8514-01 15 34642922 34642922 T C NUTM1 Missense_Mutation p.L248P 0.18 deleterious(0) possibly_damaging(0.739) TCGA-55-8514-01 15 44829397 44829397 C A EIF3J Missense_Mutation p.A2E 0.33 deleterious_low_confidence(0) benign(0.296) TCGA-55-8514-01 15 44859692 44859692 G A SPG11 Silent p.C2228C 0.05 TCGA-55-8514-01 15 45393006 45393006 G A DUOX2 Silent p.A984A 0.42 TCGA-55-8514-01 15 48829894 48829894 C A FBN1 Missense_Mutation p.W217L 0.41 probably_damaging(1) TCGA-55-8514-01 15 50902102 50902102 C A TRPM7 Missense_Mutation p.K779N 0.37 deleterious(0.01) benign(0.131) TCGA-55-8514-01 15 59487661 59487661 T A MYO1E Missense_Mutation p.R602W 0.50 deleterious(0) probably_damaging(1) TCGA-55-8514-01 15 81650538 81650538 A T TMC3 Missense_Mutation p.L232Q 0.60 deleterious(0) probably_damaging(0.968) TCGA-55-8514-01 15 85487876 85487876 G T SLC28A1 Silent p.L581L 0.60 TCGA-55-8514-01 15 86028947 86028947 G T AKAP13 5'UTR 0.31 TCGA-55-8514-01 16 1449456 1449456 C A UNKL Missense_Mutation p.R218L 0.30 deleterious(0) probably_damaging(0.93) TCGA-55-8514-01 16 20370789 20370789 G T PDILT Missense_Mutation p.P536H 0.19 deleterious_low_confidence(0.04) benign(0.017) TCGA-55-8514-01 16 23672586 23672586 G T DCTN5 Missense_Mutation p.G111V 0.45 deleterious(0) probably_damaging(0.989) TCGA-55-8514-01 16 2812916 2812916 G C SRRM2 Missense_Mutation p.R796P 0.18 unknown(0) TCGA-55-8514-01 16 31008058 31008058 G A STX1B Silent p.N161N 0.18 TCGA-55-8514-01 16 55364236 55364236 C A IRX6 3'UTR 0.37 TCGA-55-8514-01 16 56966094 56966094 G T HERPUD1 5'UTR 0.18 TCGA-55-8514-01 16 57059536 57059536 G - NLRC5 Frame_Shift_Del p.K229Rfs*22 0.22 TCGA-55-8514-01 16 62055275 62055275 A G CDH8 Silent p.D11D 0.36 TCGA-55-8514-01 16 67401041 67401041 G T LRRC36 Missense_Mutation p.L292F 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.787) TCGA-55-8514-01 16 67681061 67681061 G A RLTPR Nonsense_Mutation p.W218* 0.29 TCGA-55-8514-01 16 67965049 67965049 G A CTRL Silent p.N36N 0.26 TCGA-55-8514-01 16 69726412 69726412 C G NFAT5 Missense_Mutation p.S895C 0.35 probably_damaging(0.997) TCGA-55-8514-01 16 71318293 71318293 A - CMTR2 Frame_Shift_Del p.C511Afs*6 0.18 TCGA-55-8514-01 16 74709616 74709616 C - MLKL Frame_Shift_Del p.G362Efs*30 0.26 TCGA-55-8514-01 17 11672496 11672496 A G DNAH9 Missense_Mutation p.M2468V 0.27 benign(0.002) TCGA-55-8514-01 17 11696953 11696953 A T DNAH9 Missense_Mutation p.Q2732L 0.50 benign(0.001) TCGA-55-8514-01 17 13400014 13400014 C A HS3ST3A1 Missense_Mutation p.V241L 0.49 deleterious(0.01) benign(0.429) TCGA-55-8514-01 17 1680502 1680502 C A SERPINF1 Nonsense_Mutation p.S340* 0.36 TCGA-55-8514-01 17 30807526 30807526 G T PSMD11 Missense_Mutation p.E382D 0.30 tolerated(0.54) benign(0.002) TCGA-55-8514-01 17 35295441 35295441 G T LHX1 5'UTR 0.28 TCGA-55-8514-01 17 41008369 41008369 G T AOC3 Silent p.G698G 0.18 TCGA-55-8514-01 17 48166631 48166631 G C ITGA3 3'UTR 0.31 TCGA-55-8514-01 17 49043609 49043609 C T SPAG9 3'UTR 0.36 TCGA-55-8514-01 17 67092780 67092780 C A ABCA6 Missense_Mutation p.V1095L 0.21 tolerated(0.97) benign(0.013) TCGA-55-8514-01 17 71398132 71398132 C T SDK2 Missense_Mutation p.G878E 0.39 deleterious(0) probably_damaging(0.969) TCGA-55-8514-01 17 73872068 73872069 - T TRIM47 Frame_Shift_Ins p.M372Nfs*31 0.28 TCGA-55-8514-01 17 7480187 7480187 C T EIF4A1 Intron 0.22 TCGA-55-8514-01 17 7574017 7574017 C G TP53 Missense_Mutation p.R337P 0.43 deleterious(0.01) probably_damaging(0.99) TCGA-55-8514-01 17 76676428 76676428 T A CYTH1 Splice_Site p.X322_splice 0.23 TCGA-55-8514-01 18 61305084 61305084 C A SERPINB4 Missense_Mutation p.A348S 0.40 tolerated(0.11) benign(0.001) TCGA-55-8514-01 18 72999671 72999671 C T TSHZ1 Missense_Mutation p.P725L 0.10 deleterious(0) probably_damaging(0.987) TCGA-55-8514-01 18 76754453 76754453 C G SALL3 Missense_Mutation p.P821R 0.22 deleterious(0) benign(0.186) TCGA-55-8514-01 18 78005177 78005177 C G PARD6G Missense_Mutation p.V19L 0.28 tolerated(0.36) benign(0.029) TCGA-55-8514-01 19 10790603 10790603 G T ILF3 Missense_Mutation p.D287Y 0.23 deleterious(0) probably_damaging(0.991) TCGA-55-8514-01 19 20044521 20044521 G T ZNF93 Nonsense_Mutation p.G253* 0.39 TCGA-55-8514-01 19 21934092 21934092 A G ZNF100 Intron 0.21 TCGA-55-8514-01 19 31039840 31039840 G T ZNF536 Missense_Mutation p.C1105F 0.12 deleterious_low_confidence(0.05) benign(0.099) TCGA-55-8514-01 19 31040252 31040252 G A ZNF536 Silent p.Q1242Q 0.26 TCGA-55-8514-01 19 38126228 38126228 A T ZFP30 Missense_Mutation p.I405N 0.17 deleterious(0.01) probably_damaging(0.95) TCGA-55-8514-01 19 39001376 39001376 G C RYR1 Missense_Mutation p.G3026A 0.23 benign(0.01) TCGA-55-8514-01 19 39200910 39200910 G T ACTN4 Silent p.T249T 0.19 TCGA-55-8514-01 19 41630661 41630661 C A CYP2F1 Silent p.R334R 0.23 TCGA-55-8514-01 19 42599696 42599696 C A POU2F2 Splice_Site p.X318_splice 0.31 TCGA-55-8514-01 19 43439838 43439838 C T PSG7 Missense_Mutation p.D50N 0.15 deleterious(0) possibly_damaging(0.646) TCGA-55-8514-01 19 43766228 43766228 C A PSG9 Missense_Mutation p.V165L 0.19 tolerated(0.09) possibly_damaging(0.717) TCGA-55-8514-01 19 45021253 45021253 A G CEACAM20 RNA 0.17 TCGA-55-8514-01 19 47960197 47960197 A G SLC8A2 Missense_Mutation p.Y444H 0.44 deleterious(0) probably_damaging(0.997) TCGA-55-8514-01 19 51165356 51165356 G T SHANK1 Missense_Mutation p.Q2118K 0.20 unknown(0) TCGA-55-8514-01 19 51518152 51518152 C A KLK10 Missense_Mutation p.W245C 0.59 deleterious(0) probably_damaging(0.999) TCGA-55-8514-01 19 52819190 52819190 G T ZNF480 Missense_Mutation p.R101S 0.55 tolerated(0.88) benign(0.054) TCGA-55-8514-01 19 58291139 58291139 A T ZNF586 Missense_Mutation p.H395L 0.42 deleterious(0) probably_damaging(0.986) TCGA-55-8514-01 1 12403044 12403044 C T VPS13D Nonsense_Mutation p.R2941* 0.24 TCGA-55-8514-01 1 150724300 150724300 T A CTSS Missense_Mutation p.N195I 0.28 deleterious(0) probably_damaging(0.964) TCGA-55-8514-01 1 151260063 151260063 C T ZNF687 Silent p.T432T 0.46 TCGA-55-8514-01 1 152057408 152057408 G A TCHHL1 3'UTR 0.42 TCGA-55-8514-01 1 152059108 152059108 C A TCHHL1 Missense_Mutation p.L350F 0.13 tolerated(0.41) benign(0.133) TCGA-55-8514-01 1 152081034 152081034 A T TCHH Silent p.R1553R 0.11 TCGA-55-8514-01 1 154542739 154542739 G T CHRNB2 Missense_Mutation p.W87C 0.45 deleterious(0) probably_damaging(1) TCGA-55-8514-01 1 154918652 154918652 C T PBXIP1 Missense_Mutation p.E500K 0.30 tolerated(0.08) benign(0.09) TCGA-55-8514-01 1 155028313 155028313 G T ADAM15 Silent p.V220V 0.12 TCGA-55-8514-01 1 155028314 155028314 G T ADAM15 Missense_Mutation p.A221S 0.12 deleterious(0.02) probably_damaging(0.943) TCGA-55-8514-01 1 156912534 156912534 C A ARHGEF11 Missense_Mutation p.G1092C 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-8514-01 1 157069054 157069054 C T ETV3L Missense_Mutation p.A59T 0.41 tolerated(0.08) possibly_damaging(0.72) TCGA-55-8514-01 1 158670188 158670188 C A OR6K2 Silent p.L85L 0.16 TCGA-55-8514-01 1 160156580 160156580 C G ATP1A4 3'UTR 0.27 TCGA-55-8514-01 1 160456404 160456404 G C SLAMF6 3'UTR 0.28 TCGA-55-8514-01 1 160461013 160461013 C A SLAMF6 Missense_Mutation p.W183L 0.31 deleterious(0.05) probably_damaging(0.977) TCGA-55-8514-01 1 163117114 163117114 C A RGS5 3'UTR 0.11 TCGA-55-8514-01 1 17256514 17256514 G T CROCC Silent p.R175R 0.25 TCGA-55-8514-01 1 17331961 17331961 G A ATP13A2 Missense_Mutation p.R66C 0.17 deleterious(0.05) possibly_damaging(0.893) TCGA-55-8514-01 1 176525662 176525662 T A PAPPA2 Missense_Mutation p.F68L 0.32 tolerated_low_confidence(0.25) benign(0.027) TCGA-55-8514-01 1 180166253 180166253 C T QSOX1 3'UTR 0.45 TCGA-55-8514-01 1 186296651 186296651 T C TPR Missense_Mutation p.I1944V 0.47 benign(0) TCGA-55-8514-01 1 192545059 192545059 T C RGS1 Missense_Mutation p.F46S 0.37 tolerated(0.06) possibly_damaging(0.764) TCGA-55-8514-01 1 196874340 196874340 G T CFHR4 Missense_Mutation p.G119V 0.49 deleterious(0) probably_damaging(1) TCGA-55-8514-01 1 197025028 197025028 C G F13B Splice_Site p.X391_splice 0.35 TCGA-55-8514-01 1 201869835 201869835 C A LMOD1 Missense_Mutation p.E102D 0.16 benign(0.094) TCGA-55-8514-01 1 207095190 207095190 A T FAIM3 Missense_Mutation p.W4R 0.10 tolerated(0.15) benign(0.021) TCGA-55-8514-01 1 216850551 216850551 C T ESRRG Silent p.Q118Q 0.25 TCGA-55-8514-01 1 216850552 216850552 T A ESRRG Missense_Mutation p.Q118L 0.26 tolerated(0.33) benign(0.019) TCGA-55-8514-01 1 222717002 222717002 C T HHIPL2 Missense_Mutation p.R284H 0.17 tolerated(0.3) benign(0.025) TCGA-55-8514-01 1 227216501 227216501 T A CDC42BPA Missense_Mutation p.Q1395L 0.15 tolerated(0.06) benign(0.012) TCGA-55-8514-01 1 237982409 237982409 G A RYR2 Missense_Mutation p.G4836E 0.11 probably_damaging(0.993) TCGA-55-8514-01 1 237993923 237993923 A T RYR2 Missense_Mutation p.N4917Y 0.11 possibly_damaging(0.902) TCGA-55-8514-01 1 238048857 238048857 C A ZP4 Missense_Mutation p.G332C 0.40 deleterious(0.02) probably_damaging(0.935) TCGA-55-8514-01 1 2408085 2408085 G T PLCH2 Intron 0.26 TCGA-55-8514-01 1 24201435 24201435 C T CNR2 Missense_Mutation p.G225S 0.34 tolerated(0.61) benign(0.079) TCGA-55-8514-01 1 247836244 247836244 C - OR13G1 Frame_Shift_Del p.V34Wfs*28 0.23 TCGA-55-8514-01 1 247902351 247902351 G T OR14K1 Silent p.L145L 0.14 TCGA-55-8514-01 1 248059299 248059299 C T OR2W3 Silent p.N137N 0.33 TCGA-55-8514-01 1 248059300 248059300 C T OR2W3 Missense_Mutation p.P138S 0.33 tolerated(0.07) benign(0.039) TCGA-55-8514-01 1 248263681 248263681 G T OR2L13 3'UTR 0.59 TCGA-55-8514-01 1 248569679 248569679 G C OR2T1 Silent p.V128V 0.04 TCGA-55-8514-01 1 26689561 26689561 T A ZNF683 Nonsense_Mutation p.K367* 0.45 TCGA-55-8514-01 1 29356934 29356934 G C EPB41 Missense_Mutation p.D383H 0.34 deleterious(0) probably_damaging(1) TCGA-55-8514-01 1 33960313 33960313 G T ZSCAN20 Missense_Mutation p.G790V 0.29 deleterious(0) probably_damaging(0.96) TCGA-55-8514-01 1 34554600 34554600 G A CSMD2 Nonsense_Mutation p.Q88* 0.11 TCGA-55-8514-01 1 45221600 45221600 G T KIF2C Splice_Site p.X254_splice 0.15 TCGA-55-8514-01 1 46086760 46086760 A T CCDC17 Missense_Mutation p.L472M 0.26 deleterious(0.02) probably_damaging(0.967) TCGA-55-8514-01 1 55253386 55253386 C A TTC22 Missense_Mutation p.R246L 0.14 deleterious(0.03) benign(0.131) TCGA-55-8514-01 1 62293100 62293100 G T INADL Missense_Mutation p.G609C 0.32 deleterious(0) probably_damaging(1) TCGA-55-8514-01 20 18448089 18448089 C T POLR3F 5'UTR 0.14 TCGA-55-8514-01 20 20348993 20348993 C A INSM1 Missense_Mutation p.R28S 0.18 tolerated(0.64) benign(0.353) TCGA-55-8514-01 20 32677589 32677589 C T EIF2S2 Missense_Mutation p.G317S 0.16 deleterious(0) benign(0.025) TCGA-55-8514-01 20 36031656 36031656 C T SRC Silent p.H495H 0.18 TCGA-55-8514-01 20 54579085 54579085 G T CBLN4 Missense_Mutation p.P48Q 0.18 deleterious(0) possibly_damaging(0.498) TCGA-55-8514-01 20 57428898 57428898 G A GNAS Missense_Mutation p.G193E 0.21 deleterious_low_confidence(0.01) unknown(0) TCGA-55-8514-01 20 5932736 5932736 G A MCM8 Silent p.G25G 0.16 TCGA-55-8514-01 21 10934073 10934073 T A TPTE Missense_Mutation p.I302F 0.17 tolerated(0.16) benign(0.135) TCGA-55-8514-01 21 10951407 10951407 A T TPTE Missense_Mutation p.V102D 0.20 deleterious(0.01) possibly_damaging(0.804) TCGA-55-8514-01 21 38302560 38302560 T A HLCS Silent p.S390S 0.13 TCGA-55-8514-01 21 41385021 41385021 G T DSCAM Silent p.L1993L 0.39 TCGA-55-8514-01 21 45799050 45799050 G A TRPM2 Silent p.T395T 0.18 TCGA-55-8514-01 21 46086479 46086479 T A KRTAP12-2 Missense_Mutation p.S109C 0.34 tolerated(0.25) probably_damaging(0.97) TCGA-55-8514-01 22 18273778 18273778 C A MICAL3 Missense_Mutation p.R1937L 0.27 probably_damaging(0.999) TCGA-55-8514-01 22 19207480 19207480 G T CLTCL1 Missense_Mutation p.R945S 0.28 deleterious(0) benign(0.365) TCGA-55-8514-01 22 37322207 37322207 C G CSF2RB Missense_Mutation p.L127V 0.29 deleterious(0) possibly_damaging(0.677) TCGA-55-8514-01 22 39884172 39884172 C A MGAT3 Missense_Mutation p.L274M 0.20 tolerated(0.11) possibly_damaging(0.684) TCGA-55-8514-01 22 43898596 43898596 G A MPPED1 Missense_Mutation p.R274H 0.27 deleterious(0) probably_damaging(0.992) TCGA-55-8514-01 22 45802747 45802747 C G SMC1B Splice_Site p.X100_splice 0.30 TCGA-55-8514-01 22 46804900 46804900 C A CELSR1 Missense_Mutation p.R1740L 0.20 tolerated(1) benign(0.01) TCGA-55-8514-01 22 50657617 50657617 G A TUBGCP6 Silent p.A1502A 0.13 TCGA-55-8514-01 22 51237429 51237429 C T RPL23AP82 RNA 0.30 TCGA-55-8514-01 2 114356338 114356338 C T WASH2P RNA 0.26 TCGA-55-8514-01 2 125660635 125660635 G T CNTNAP5 Missense_Mutation p.D1204Y 0.32 tolerated(0.07) benign(0.008) TCGA-55-8514-01 2 136403032 136403032 G T R3HDM1 Nonsense_Mutation p.G520* 0.14 TCGA-55-8514-01 2 140995744 140995744 C A LRP1B Missense_Mutation p.G4513C 0.25 benign(0.14) TCGA-55-8514-01 2 176857914 176857914 T A KIAA1715 Missense_Mutation p.D22V 0.25 deleterious(0) probably_damaging(0.974) TCGA-55-8514-01 2 179419327 179419327 T C TTN Missense_Mutation p.M29583V 0.19 TCGA-55-8514-01 2 179477612 179477612 G A TTN Silent p.L16612L 0.10 TCGA-55-8514-01 2 179639128 179639128 C A TTN Missense_Mutation p.C2288F 0.14 TCGA-55-8514-01 2 179664563 179664563 G T TTN Silent p.R220R 0.13 TCGA-55-8514-01 2 182363444 182363444 A C ITGA4 Silent p.T545T 0.23 TCGA-55-8514-01 2 185803720 185803720 C A ZNF804A Missense_Mutation p.H1199Q 0.29 deleterious(0.03) probably_damaging(0.969) TCGA-55-8514-01 2 190339500 190339500 G T WDR75 Missense_Mutation p.V752L 0.32 tolerated(0.36) benign(0.007) TCGA-55-8514-01 2 202245697 202245697 C A TRAK2 Missense_Mutation p.A772S 0.24 tolerated(0.51) benign(0.008) TCGA-55-8514-01 2 31483658 31483658 T A EHD3 Missense_Mutation p.L262H 0.18 deleterious(0.03) probably_damaging(0.928) TCGA-55-8514-01 2 38978478 38978478 C A SRSF7 5'UTR 0.47 TCGA-55-8514-01 2 66664952 66664952 C A MEIS1 Silent p.S32S 0.20 TCGA-55-8514-01 2 73519244 73519244 C A EGR4 Missense_Mutation p.A371S 0.29 tolerated(0.31) benign(0.323) TCGA-55-8514-01 2 8822431 8822431 C A ID2 Missense_Mutation p.L46I 0.05 deleterious(0) probably_damaging(0.998) TCGA-55-8514-01 2 89442299 89442299 C A IGKV3-20 Missense_Mutation p.G36W 0.16 deleterious(0) probably_damaging(0.998) TCGA-55-8514-01 3 10960101 10960101 C G SLC6A11 Nonsense_Mutation p.Y361* 0.45 TCGA-55-8514-01 3 142499774 142499774 A G TRPC1 Missense_Mutation p.H288R 0.47 deleterious(0.03) possibly_damaging(0.718) TCGA-55-8514-01 3 182554382 182554382 A G ATP11B Intron 0.41 TCGA-55-8514-01 3 184104390 184104390 G T CHRD Silent p.V681V 0.40 TCGA-55-8514-01 3 195453013 195453013 C T MUC20 Silent p.P513P 0.28 TCGA-55-8514-01 3 195611830 195611830 G A TNK2 Silent p.P166P 0.52 TCGA-55-8514-01 3 38620936 38620936 C A SCN5A Missense_Mutation p.R1093S 0.47 tolerated(0.77) benign(0.06) TCGA-55-8514-01 3 48506022 48506022 G T ATRIP Missense_Mutation p.L672F 0.22 tolerated(0.68) benign(0.03) TCGA-55-8514-01 3 75679990 75679990 G T MIR1324 RNA 0.08 TCGA-55-8514-01 4 101947159 101947159 C A PPP3CA Missense_Mutation p.D477Y 0.27 deleterious(0) probably_damaging(0.968) TCGA-55-8514-01 4 13546029 13546029 G C NKX3-2 Missense_Mutation p.R4G 0.54 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-55-8514-01 4 167810297 167810297 G C SPOCK3 Missense_Mutation p.S194R 0.35 tolerated(0.3) benign(0.002) TCGA-55-8514-01 4 1730380 1730380 G C TACC3 Silent p.P417P 0.54 TCGA-55-8514-01 4 177241360 177241360 C T SPCS3 Missense_Mutation p.R45W 0.40 deleterious(0) possibly_damaging(0.788) TCGA-55-8514-01 4 187630767 187630767 T C FAT1 Missense_Mutation p.Y72C 0.48 probably_damaging(0.998) TCGA-55-8514-01 4 39217613 39217613 G A WDR19 Missense_Mutation p.V372I 0.47 tolerated(0.48) benign(0.047) TCGA-55-8514-01 4 47880617 47880617 C A NFXL1 Missense_Mutation p.L668F 0.54 deleterious(0) probably_damaging(0.935) TCGA-55-8514-01 4 55139760 55139760 C T PDGFRA Missense_Mutation p.T474M 0.52 tolerated(0.37) benign(0.001) TCGA-55-8514-01 4 87028499 87028499 C A MAPK10 Silent p.A81A 0.54 TCGA-55-8514-01 4 88261736 88261736 C T HSD17B11 Missense_Mutation p.E240K 0.38 deleterious(0.05) benign(0.274) TCGA-55-8514-01 4 9785117 9785117 G T DRD5 3'UTR 0.43 TCGA-55-8514-01 5 115350991 115350991 T A AQPEP Silent p.I831I 0.38 TCGA-55-8514-01 5 126250704 126250704 C A MARCH3 Missense_Mutation p.W104L 0.17 deleterious(0) probably_damaging(0.951) TCGA-55-8514-01 5 140531445 140531445 C A PCDHB6 Missense_Mutation p.S536Y 0.42 deleterious(0.01) possibly_damaging(0.676) TCGA-55-8514-01 5 14406721 14406721 C T TRIO Silent p.S1633S 0.20 TCGA-55-8514-01 5 147450011 147450011 A C SPINK5 Silent p.I69I 0.56 TCGA-55-8514-01 5 148712329 148712329 C T AFAP1L1 Missense_Mutation p.R683W 0.45 deleterious(0) probably_damaging(1) TCGA-55-8514-01 5 156390188 156390188 G T TIMD4 Missense_Mutation p.L8I 0.62 deleterious(0.01) probably_damaging(0.963) TCGA-55-8514-01 5 23522967 23522967 G T PRDM9 Missense_Mutation p.E285D 0.29 deleterious(0) benign(0.286) TCGA-55-8514-01 5 43294159 43294159 C T HMGCS1 Silent p.P394P 0.43 TCGA-55-8514-01 5 484705 484705 C A SLC9A3 Missense_Mutation p.G288C 0.25 tolerated(0.06) probably_damaging(0.997) TCGA-55-8514-01 5 78376511 78376511 G A BHMT2 Nonsense_Mutation p.W87* 0.53 TCGA-55-8514-01 6 10955346 10955346 T A SYCP2L Intron 0.35 TCGA-55-8514-01 6 110059615 110059615 A G FIG4 Missense_Mutation p.D245G 0.30 deleterious(0.01) possibly_damaging(0.864) TCGA-55-8514-01 6 111912617 111912617 G C TRAF3IP2 Missense_Mutation p.Q225E 0.30 deleterious(0.01) benign(0.345) TCGA-55-8514-01 6 118803036 118803036 T A CEP85L Nonsense_Mutation p.K554* 0.18 TCGA-55-8514-01 6 12161913 12161913 G T HIVEP1 Silent p.T2243T 0.25 TCGA-55-8514-01 6 135776873 135776873 T A AHI1 Missense_Mutation p.E448V 0.25 deleterious(0) possibly_damaging(0.798) TCGA-55-8514-01 6 136582444 136582444 C - BCLAF1 Frame_Shift_Del p.E906Kfs*41 0.11 TCGA-55-8514-01 6 152740784 152740784 T G SYNE1 Missense_Mutation p.I1781L 0.21 benign(0.365) TCGA-55-8514-01 6 154360678 154360678 C A OPRM1 Missense_Mutation p.T93N 0.15 tolerated_low_confidence(0.14) benign(0.001) TCGA-55-8514-01 6 160998198 160998198 T C LPA Missense_Mutation p.H1534R 0.17 deleterious(0.01) probably_damaging(0.979) TCGA-55-8514-01 6 162206937 162206937 G T PARK2 Missense_Mutation p.S246R 0.12 deleterious(0.04) possibly_damaging(0.535) TCGA-55-8514-01 6 170156509 170156509 T C ERMARD Missense_Mutation p.S131P 0.10 deleterious(0) probably_damaging(0.951) TCGA-55-8514-01 6 2765952 2765952 C - WRNIP1 Frame_Shift_Del p.N33Tfs*48 0.30 TCGA-55-8514-01 6 31112816 31112816 G A CCHCR1 Silent p.A637A 0.12 TCGA-55-8514-01 6 41652556 41652556 G T TFEB Silent p.G404G 0.41 TCGA-55-8514-01 6 43273437 43273437 C A CRIP3 3'UTR 0.30 TCGA-55-8514-01 6 46826017 46826017 T - GPR116 Frame_Shift_Del p.K1208Sfs*64 0.25 TCGA-55-8514-01 6 5004245 5004245 G T RPP40 5'UTR 0.10 TCGA-55-8514-01 6 50712950 50712950 C A TFAP2D Silent p.I338I 0.29 TCGA-55-8514-01 6 54805677 54805677 C A FAM83B Missense_Mutation p.N636K 0.20 tolerated(0.45) benign(0.002) TCGA-55-8514-01 6 66054070 66054070 C A EYS Missense_Mutation p.G487V 0.17 tolerated(0.06) probably_damaging(0.988) TCGA-55-8514-01 6 70812065 70812065 G A COL19A1 Missense_Mutation p.R410K 0.25 tolerated(0.19) unknown(0) TCGA-55-8514-01 6 71276631 71276631 G T C6orf57 5'UTR 0.27 TCGA-55-8514-01 6 74520797 74520797 C T CD109 Missense_Mutation p.T1210M 0.10 tolerated(0.3) benign(0.014) TCGA-55-8514-01 6 84234207 84234207 G T PRSS35 Silent p.G349G 0.27 TCGA-55-8514-01 6 87968496 87968497 - C ZNF292 Frame_Shift_Ins p.L1719Ffs*6 0.29 TCGA-55-8514-01 7 123150032 123150032 G A IQUB Missense_Mutation p.T152I 0.03 tolerated(0.61) benign(0.007) TCGA-55-8514-01 7 123594504 123594504 G T SPAM1 Missense_Mutation p.A294S 0.39 tolerated(0.79) benign(0.06) TCGA-55-8514-01 7 12664768 12664768 G T SCIN Splice_Site p.X298_splice 0.50 TCGA-55-8514-01 7 138763341 138763342 CT - ZC3HAV1 Frame_Shift_Del p.E510Gfs*5 0.28 TCGA-55-8514-01 7 146536868 146536868 C A CNTNAP2 Silent p.R92R 0.31 TCGA-55-8514-01 7 146818108 146818108 A T CNTNAP2 Silent p.S264S 0.41 TCGA-55-8514-01 7 151879370 151879370 G A KMT2C Missense_Mutation p.P1859S 0.34 benign(0.083) TCGA-55-8514-01 7 151900020 151900020 T C KMT2C Missense_Mutation p.Q1364R 0.17 probably_damaging(0.995) TCGA-55-8514-01 7 39472856 39472856 C T POU6F2 Silent p.L403L 0.33 TCGA-55-8514-01 7 39745819 39745819 T A RALA Missense_Mutation p.I199N 0.12 tolerated(0.36) benign(0.024) TCGA-55-8514-01 7 49951642 49951642 T A VWC2 Missense_Mutation p.F280Y 0.38 tolerated(0.61) benign(0.039) TCGA-55-8514-01 7 57188106 57188106 T G ZNF479 Missense_Mutation p.N339T 0.47 tolerated(1) benign(0.002) TCGA-55-8514-01 7 72645861 72645861 C A NCF1B RNA 0.29 TCGA-55-8514-01 7 76062965 76062965 G C ZP3 Splice_Site p.X238_splice 0.18 TCGA-55-8514-01 7 96653918 96653918 G T DLX5 Missense_Mutation p.D6E 0.12 tolerated(0.37) benign(0.003) TCGA-55-8514-01 8 113301606 113301606 G C CSMD3 Missense_Mutation p.P3046A 0.29 deleterious(0) possibly_damaging(0.854) TCGA-55-8514-01 8 121267516 121267516 T G COL14A1 Silent p.V930V 0.06 TCGA-55-8514-01 8 139833394 139833394 G T COL22A1 Missense_Mutation p.D410E 0.31 unknown(0) TCGA-55-8514-01 8 144239673 144239673 C T LY6H Silent p.G160G 0.24 TCGA-55-8514-01 8 145999821 145999821 G A ZNF34 Silent p.N171N 0.15 TCGA-55-8514-01 8 20036983 20036983 G A SLC18A1 Missense_Mutation p.P46L 0.35 deleterious(0) probably_damaging(1) TCGA-55-8514-01 8 21931325 21931325 G A DMTN Missense_Mutation p.D272N 0.06 deleterious(0.03) probably_damaging(0.961) TCGA-55-8514-01 8 3076777 3076777 C A CSMD1 Nonsense_Mutation p.E1558* 0.30 TCGA-55-8514-01 8 48798590 48798590 G C PRKDC Nonsense_Mutation p.S1563* 0.35 TCGA-55-8514-01 8 48883409 48883409 G - MCM4 Frame_Shift_Del p.E592Nfs*55 0.12 TCGA-55-8514-01 8 52567304 52567304 T A PXDNL Nonsense_Mutation p.R61* 0.39 TCGA-55-8514-01 8 57026076 57026076 C A MOS Missense_Mutation p.G156C 0.33 tolerated(0.25) probably_damaging(0.96) TCGA-55-8514-01 8 59059603 59059603 G A FAM110B Missense_Mutation p.A272T 0.39 deleterious(0) possibly_damaging(0.771) TCGA-55-8514-01 8 77618870 77618870 C A ZFHX4 Missense_Mutation p.F849L 0.50 benign(0.294) TCGA-55-8514-01 8 77690596 77690596 C A ZFHX4 Silent p.L1082L 0.34 TCGA-55-8514-01 8 77766182 77766182 A C ZFHX4 Missense_Mutation p.D2342A 0.39 benign(0.01) TCGA-55-8514-01 8 82665453 82665453 G A CHMP4C Silent p.A115A 0.16 TCGA-55-8514-01 8 89179958 89179958 C T MMP16 Missense_Mutation p.G217R 0.28 deleterious(0.01) possibly_damaging(0.83) TCGA-55-8514-01 9 126777716 126777716 C A LHX2 Nonsense_Mutation p.Y213* 0.21 TCGA-55-8514-01 9 132481637 132481637 C T PRRX2 Silent p.P129P 0.50 TCGA-55-8514-01 9 137630337 137630337 C T COL5A1 Silent p.G469G 0.19 TCGA-55-8514-01 9 137710864 137710864 G A COL5A1 Missense_Mutation p.G1471S 0.22 unknown(0) TCGA-55-8514-01 9 139350537 139350537 C A SEC16A Missense_Mutation p.V1878F 0.17 deleterious(0) possibly_damaging(0.905) TCGA-55-8514-01 9 21384861 21384861 C G IFNA2 Missense_Mutation p.K156N 0.19 deleterious(0) probably_damaging(0.996) TCGA-55-8514-01 9 35792589 35792589 G T NPR2 Missense_Mutation p.V62L 0.56 tolerated(1) benign(0.004) TCGA-55-8514-01 9 36170358 36170358 C A CCIN Missense_Mutation p.Q287K 0.14 tolerated(0.32) benign(0.376) TCGA-55-8514-01 9 94519681 94519681 C G ROR2 Silent p.R112R 0.21 TCGA-55-8514-01 9 97369234 97369236 CCT AA FBP1 Splice_Site p.X190_splice 0.22 TCGA-55-8514-01 X 100357331 100357331 G T CENPI Missense_Mutation p.A99S 0.44 deleterious(0) possibly_damaging(0.647) TCGA-55-8514-01 X 102528794 102528794 G T TCEAL5 3'UTR 0.29 TCGA-55-8514-01 X 103268203 103268203 G T H2BFWT Silent p.P10P 0.10 TCGA-55-8514-01 X 107976099 107976099 G T IRS4 Missense_Mutation p.S1159Y 0.44 deleterious_low_confidence(0) unknown(0) TCGA-55-8514-01 X 108902739 108902739 C A ACSL4 Missense_Mutation p.D608Y 0.14 tolerated(1) benign(0.006) TCGA-55-8514-01 X 114141297 114141297 T C HTR2C Silent p.I232I 0.02 TCGA-55-8514-01 X 118717138 118717138 G T UBE2A Missense_Mutation p.A127S 0.12 tolerated(0.14) probably_damaging(0.999) TCGA-55-8514-01 X 13061040 13061040 C A FAM9C Missense_Mutation p.A71S 0.07 tolerated(0.1) benign(0.025) TCGA-55-8514-01 X 132351985 132351985 G C TFDP3 Missense_Mutation p.N101K 0.36 tolerated(1) benign(0.018) TCGA-55-8514-01 X 134948043 134948043 C A CT45A5 Silent p.V94V 0.44 TCGA-55-8514-01 X 139586680 139586680 G T SOX3 Missense_Mutation p.D182E 0.18 tolerated(1) probably_damaging(0.996) TCGA-55-8514-01 X 146307425 146307425 C A MIR513A2 RNA 0.21 TCGA-55-8514-01 X 14930382 14930382 C A MOSPD2 Silent p.T297T 0.18 TCGA-55-8514-01 X 14933885 14933885 G A MOSPD2 Silent p.G395G 0.07 TCGA-55-8514-01 X 14933886 14933886 G A MOSPD2 Missense_Mutation p.G396S 0.07 tolerated(0.08) possibly_damaging(0.891) TCGA-55-8514-01 X 150155703 150155703 G T HMGB3 Missense_Mutation p.W131C 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-55-8514-01 X 151093080 151093080 A T MAGEA4 Missense_Mutation p.E315V 0.18 deleterious(0) possibly_damaging(0.908) TCGA-55-8514-01 X 151560744 151560744 G T GABRA3 Intron 0.07 TCGA-55-8514-01 X 151900014 151900014 C A MAGEA12 Missense_Mutation p.G263C 0.16 deleterious(0.01) benign(0.313) TCGA-55-8514-01 X 152721053 152721053 G T HAUS7 Missense_Mutation p.P303T 0.23 deleterious(0) probably_damaging(0.991) TCGA-55-8514-01 X 153052970 153052970 G T IDH3G Missense_Mutation p.A208E 0.15 deleterious(0) probably_damaging(0.995) TCGA-55-8514-01 X 153220168 153220168 G T HCFC1 Missense_Mutation p.L1228I 0.20 tolerated_low_confidence(0.35) benign(0) TCGA-55-8514-01 X 19378833 19378833 G T MAP3K15 3'UTR 0.12 TCGA-55-8514-01 X 34147997 34147997 T C FAM47A 3'UTR 0.56 TCGA-55-8514-01 X 34149573 34149573 C A FAM47A Missense_Mutation p.D275Y 0.50 tolerated(0.07) probably_damaging(0.934) TCGA-55-8514-01 X 34961919 34961919 C A FAM47B Missense_Mutation p.P324H 0.49 deleterious(0.02) probably_damaging(0.985) TCGA-55-8514-01 X 47002081 47002081 G T NDUFB11 Silent p.V90V 0.09 TCGA-55-8514-01 X 47107248 47107248 G C USP11 Silent p.L937L 0.09 TCGA-55-8514-01 X 65423256 65423256 A T HEPH Missense_Mutation p.R764W 0.12 deleterious(0) possibly_damaging(0.664) TCGA-55-8514-01 X 70356419 70356419 C A MED12 Missense_Mutation p.P1772T 0.21 benign(0) TCGA-55-8514-01 X 70473064 70473064 G T ZMYM3 Silent p.T14T 0.21 TCGA-55-8514-01 X 71887315 71887315 C G PHKA1 Silent p.L209L 0.51 TCGA-55-8514-01 X 73046905 73046905 C A XIST RNA 0.43 TCGA-55-8514-01 X 73071790 73071790 G A XIST RNA 0.21 TCGA-55-8514-01 X 77387265 77387265 C G TAF9B Missense_Mutation p.A200P 0.18 tolerated(0.11) benign(0.001) TCGA-55-8514-01 X 78616521 78616521 T C ITM2A 3'UTR 0.21 TCGA-55-8514-01 X 79698698 79698698 C A FAM46D Missense_Mutation p.H220Q 0.09 tolerated(0.28) benign(0.026) TCGA-55-8614-01 10 105642539 105642539 G A OBFC1 Missense_Mutation p.P337L 0.10 tolerated(0.52) benign(0.246) TCGA-55-8614-01 10 135032401 135032401 G T KNDC1 Missense_Mutation p.A1582S 0.19 deleterious(0.04) possibly_damaging(0.513) TCGA-55-8614-01 10 26508085 26508085 G A GAD2 Missense_Mutation p.D134N 0.12 tolerated(0.08) probably_damaging(0.98) TCGA-55-8614-01 10 28897127 28897127 G T WAC Missense_Mutation p.G311V 0.22 tolerated_low_confidence(0.26) benign(0.001) TCGA-55-8614-01 10 32760083 32760083 A G CCDC7 Missense_Mutation p.Q201R 0.32 tolerated(0.13) benign(0.019) TCGA-55-8614-01 10 47933869 47933869 A T FAM21B Silent p.A647A 0.32 TCGA-55-8614-01 10 50835767 50835767 A T CHAT Silent p.P349P 0.28 TCGA-55-8614-01 10 50950996 50950996 C T OGDHL Silent p.A630A 0.19 TCGA-55-8614-01 10 88418410 88418410 C A OPN4 Silent p.A209A 0.10 TCGA-55-8614-01 10 88418411 88418411 C G OPN4 Missense_Mutation p.L210V 0.10 deleterious(0) possibly_damaging(0.646) TCGA-55-8614-01 10 96306182 96306182 C G HELLS Missense_Mutation p.T27S 0.23 tolerated(0.05) probably_damaging(0.993) TCGA-55-8614-01 11 124180045 124180045 G A OR8D1 Silent p.N206N 0.21 TCGA-55-8614-01 11 124294277 124294277 C T OR8B4 Missense_Mutation p.R164Q 0.12 deleterious_low_confidence(0) possibly_damaging(0.475) TCGA-55-8614-01 11 124489324 124489324 C T PANX3 Silent p.Y224Y 0.23 TCGA-55-8614-01 11 134257618 134257618 G T B3GAT1 Intron 0.23 TCGA-55-8614-01 11 15243058 15243058 C T INSC Silent p.T332T 0.23 TCGA-55-8614-01 11 3845502 3845502 A G PGAP2 Missense_Mutation p.I202V 0.29 tolerated(0.63) benign(0.001) TCGA-55-8614-01 11 44077844 44077844 A T ACCSL Missense_Mutation p.Q432L 0.22 deleterious(0) probably_damaging(0.997) TCGA-55-8614-01 11 48346779 48346779 C A OR4C3 Missense_Mutation p.T96N 0.07 deleterious(0.01) possibly_damaging(0.799) TCGA-55-8614-01 11 5220988 5220988 G A OR51V1 Missense_Mutation p.L315F 0.29 deleterious(0.02) benign(0.013) TCGA-55-8614-01 11 62287320 62287320 C G AHNAK Missense_Mutation p.D4857H 0.12 possibly_damaging(0.906) TCGA-55-8614-01 11 65123704 65123704 C A TIGD3 Missense_Mutation p.A142E 0.25 tolerated(1) benign(0.011) TCGA-55-8614-01 11 65123705 65123705 G A TIGD3 Silent p.A142A 0.25 TCGA-55-8614-01 11 65271299 65271299 A G MALAT1 RNA 0.16 TCGA-55-8614-01 11 65631160 65631160 G - MUS81 Frame_Shift_Del p.V311Wfs*46 0.17 TCGA-55-8614-01 11 73785497 73785497 C G C2CD3 Missense_Mutation p.Q1584H 0.18 deleterious(0.02) possibly_damaging(0.785) TCGA-55-8614-01 11 82879476 82879476 G A PCF11 Missense_Mutation p.R700Q 0.16 tolerated(0.36) possibly_damaging(0.866) TCGA-55-8614-01 11 94113578 94113578 T A GPR83 Missense_Mutation p.S337C 0.24 deleterious(0) probably_damaging(1) TCGA-55-8614-01 12 100904815 100904815 C T NR1H4 Silent p.R123R 0.11 TCGA-55-8614-01 12 101368649 101368649 G A ANO4 Missense_Mutation p.R160H 0.12 tolerated(0.08) possibly_damaging(0.88) TCGA-55-8614-01 12 105538108 105538108 G T KIAA1033 Missense_Mutation p.R685L 0.11 deleterious(0) probably_damaging(0.972) TCGA-55-8614-01 12 10782172 10782172 T A STYK1 Missense_Mutation p.T185S 0.10 tolerated(0.54) possibly_damaging(0.906) TCGA-55-8614-01 12 110466411 110466411 T A ANKRD13A Missense_Mutation p.I347N 0.16 deleterious(0) probably_damaging(1) TCGA-55-8614-01 12 113285576 113285576 G T RPH3A Missense_Mutation p.E53D 0.10 tolerated(0.05) benign(0.131) TCGA-55-8614-01 12 117768758 117768758 C A NOS1 Silent p.P39P 0.10 TCGA-55-8614-01 12 12274280 12274280 T G LRP6 Missense_Mutation p.Y1541S 0.12 tolerated(0.09) possibly_damaging(0.71) TCGA-55-8614-01 12 124812012 124812012 C T NCOR2 Missense_Mutation p.A2376T 0.12 possibly_damaging(0.876) TCGA-55-8614-01 12 124957679 124957679 T C NCOR2 Splice_Site p.X138_splice 0.27 TCGA-55-8614-01 12 14576830 14576830 T A ATF7IP Intron 0.15 TCGA-55-8614-01 12 18858220 18858220 T C PLCZ1 Silent p.L248L 0.29 TCGA-55-8614-01 12 33031446 33031446 C T PKP2 Nonsense_Mutation p.W123* 0.27 TCGA-55-8614-01 12 4479566 4479566 G A FGF23 Silent p.N233N 0.09 TCGA-55-8614-01 12 51693469 51693469 G T BIN2 Silent p.L146L 0.19 TCGA-55-8614-01 12 52790006 52790006 A G KRT82 Missense_Mutation p.L360P 0.41 deleterious(0) probably_damaging(0.981) TCGA-55-8614-01 12 55641387 55641387 G T OR6C74 Missense_Mutation p.G106W 0.20 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-55-8614-01 12 56078920 56078920 C A ITGA7 Silent p.P1116P 0.30 TCGA-55-8614-01 12 68642455 68642455 A T IL22 3'UTR 0.11 TCGA-55-8614-01 12 7045534 7045534 G C ATN1 Silent p.A368A 0.24 TCGA-55-8614-01 12 73015432 73015432 G T TRHDE Missense_Mutation p.R814L 0.12 tolerated(0.43) probably_damaging(0.943) TCGA-55-8614-01 12 7527333 7527333 T C CD163L1 Silent p.L1038L 0.11 TCGA-55-8614-01 12 77424024 77424024 C A E2F7 Nonsense_Mutation p.E491* 0.11 TCGA-55-8614-01 12 85521644 85521644 G C LRRIQ1 Missense_Mutation p.G1348R 0.23 deleterious(0.02) probably_damaging(0.995) TCGA-55-8614-01 12 94634377 94634377 G C PLXNC1 Missense_Mutation p.G746A 0.21 tolerated(0.7) benign(0.224) TCGA-55-8614-01 12 95604748 95604748 A G FGD6 Silent p.D104D 0.15 TCGA-55-8614-01 13 114134923 114134923 C T DCUN1D2 Missense_Mutation p.R119K 0.16 tolerated(1) benign(0.002) TCGA-55-8614-01 13 43918724 43918724 T C ENOX1 Missense_Mutation p.E329G 0.27 deleterious(0.02) benign(0.211) TCGA-55-8614-01 13 53008945 53008945 T C VPS36 Missense_Mutation p.T142A 0.29 tolerated(0.42) benign(0.003) TCGA-55-8614-01 13 70314560 70314560 G T KLHL1 Silent p.R590R 0.13 TCGA-55-8614-01 13 70681614 70681614 G T KLHL1 Missense_Mutation p.S73Y 0.14 deleterious_low_confidence(0.02) benign(0.242) TCGA-55-8614-01 14 105615570 105615570 C G JAG2 Missense_Mutation p.D564H 0.11 deleterious(0.05) possibly_damaging(0.8) TCGA-55-8614-01 14 20344850 20344850 G T OR4K2 Missense_Mutation p.V142F 0.40 deleterious(0.04) benign(0.049) TCGA-55-8614-01 14 23057908 23057908 G C DAD1 Silent p.P52P 0.22 TCGA-55-8614-01 14 24624871 24624871 C T RNF31 Silent p.H821H 0.07 TCGA-55-8614-01 14 24718609 24718610 - G TGM1 Frame_Shift_Ins p.A789Sfs*14 0.24 TCGA-55-8614-01 14 56233164 56233164 G T RP11-813I20.2 Intron 0.44 TCGA-55-8614-01 14 58915180 58915180 A G KIAA0586 Silent p.P363P 0.29 TCGA-55-8614-01 14 64954403 64954403 G C ZBTB25 Missense_Mutation p.D182E 0.35 tolerated(0.51) benign(0.001) TCGA-55-8614-01 14 93172873 93172873 G A LGMN Silent p.A382A 0.32 TCGA-55-8614-01 15 20644043 20644043 C T HERC2P3 RNA 0.05 TCGA-55-8614-01 15 20663135 20663135 G T HERC2P3 RNA 0.10 TCGA-55-8614-01 15 25470410 25470410 C T SNORD115-30 RNA 0.12 TCGA-55-8614-01 15 53994371 53994371 C A WDR72 Missense_Mutation p.G510V 0.22 deleterious(0) probably_damaging(1) TCGA-55-8614-01 15 68582664 68582665 - TCA FEM1B In_Frame_Ins p.A323_L324insH 0.24 TCGA-55-8614-01 15 81637163 81637163 T C TMC3 Missense_Mutation p.T488A 0.11 tolerated(0.13) benign(0.024) TCGA-55-8614-01 15 87572170 87572170 C G AGBL1 3'UTR 0.17 TCGA-55-8614-01 15 90610771 90610771 G T ZNF710 Silent p.G134G 0.19 TCGA-55-8614-01 16 2580434 2580434 G A CEMP1 Missense_Mutation p.P214L 0.14 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-55-8614-01 16 270650 270650 C G LUC7L Missense_Mutation p.D85H 0.11 deleterious(0) probably_damaging(0.997) TCGA-55-8614-01 16 28848097 28848097 G A ATXN2L 3'UTR 0.05 TCGA-55-8614-01 16 61761041 61761041 G C CDH8 Missense_Mutation p.S498C 0.22 tolerated(0.08) possibly_damaging(0.628) TCGA-55-8614-01 16 68857305 68857305 A T CDH1 Missense_Mutation p.Q647L 0.27 tolerated(0.66) benign(0.157) TCGA-55-8614-01 17 12656653 12656653 G T MYOCD Missense_Mutation p.C683F 0.32 tolerated(0.72) possibly_damaging(0.724) TCGA-55-8614-01 17 3181524 3181524 G A OR3A2 Nonsense_Mutation p.R236* 0.12 TCGA-55-8614-01 17 42882260 42882260 A G GJC1 Missense_Mutation p.I309T 0.07 tolerated(0.06) benign(0.023) TCGA-55-8614-01 17 4644954 4644954 G A ZMYND15 Missense_Mutation p.V224M 0.33 tolerated_low_confidence(1) benign(0.017) TCGA-55-8614-01 17 47301767 47301767 C G PHOSPHO1 Silent p.A240A 0.44 TCGA-55-8614-01 17 4907874 4907874 G T KIF1C Missense_Mutation p.R318L 0.33 deleterious(0.02) benign(0.122) TCGA-55-8614-01 17 63822469 63822469 C T CEP112 Intron 0.35 TCGA-55-8614-01 17 67109503 67109503 T C ABCA6 Splice_Site p.X635_splice 0.10 TCGA-55-8614-01 17 7133404 7133404 G A DVL2 Missense_Mutation p.R161W 0.14 deleterious(0) probably_damaging(0.99) TCGA-55-8614-01 17 7577141 7577141 C A TP53 Missense_Mutation p.G266V 0.41 deleterious(0) probably_damaging(0.999) TCGA-55-8614-01 18 29437776 29437776 G C TRAPPC8 Missense_Mutation p.P972R 0.08 deleterious(0.01) benign(0.345) TCGA-55-8614-01 18 54547391 54547391 A G WDR7 Missense_Mutation p.H1174R 0.10 tolerated(0.19) probably_damaging(0.918) TCGA-55-8614-01 18 6046752 6046752 C A L3MBTL4 Silent p.V482V 0.08 TCGA-55-8614-01 19 10089581 10089581 C T COL5A3 Missense_Mutation p.G984S 0.40 unknown(0) TCGA-55-8614-01 19 13063562 13063562 G C RAD23A Silent p.L291L 0.32 TCGA-55-8614-01 19 1825905 1825905 G C REXO1 Missense_Mutation p.S650W 0.05 deleterious(0.01) possibly_damaging(0.652) TCGA-55-8614-01 19 21588583 21588583 G C ZNF493 Missense_Mutation p.D60H 0.18 deleterious(0.02) probably_damaging(0.957) TCGA-55-8614-01 19 23159287 23159287 G A ZNF728 Silent p.Y284Y 0.13 TCGA-55-8614-01 19 33702361 33702361 T C SLC7A10 Missense_Mutation p.M291V 0.09 tolerated(0.06) possibly_damaging(0.824) TCGA-55-8614-01 19 35981355 35981355 T C KRTDAP 5'UTR 0.24 TCGA-55-8614-01 19 36335128 36335128 G A NPHS1 Missense_Mutation p.R697C 0.42 deleterious(0.01) possibly_damaging(0.856) TCGA-55-8614-01 19 39689847 39689847 G A NCCRP1 Missense_Mutation p.E164K 0.44 tolerated(0.07) benign(0.151) TCGA-55-8614-01 19 42351722 42351722 T A DMRTC2 Splice_Site p.X75_splice 0.50 TCGA-55-8614-01 19 43689190 43689190 C G PSG5 Missense_Mutation p.L58F 0.06 deleterious(0) probably_damaging(0.985) TCGA-55-8614-01 19 46021240 46021240 C T VASP Silent p.P77P 0.17 TCGA-55-8614-01 19 47870340 47870340 G T DHX34 Missense_Mutation p.A566S 0.15 deleterious(0) possibly_damaging(0.898) TCGA-55-8614-01 19 50461939 50461939 G C SIGLEC11 Missense_Mutation p.L442V 0.11 deleterious(0) probably_damaging(0.991) TCGA-55-8614-01 19 51022088 51022088 G A LRRC4B Silent p.H294H 0.16 TCGA-55-8614-01 19 51885674 51885674 G C LIM2 Nonsense_Mutation p.S150* 0.08 TCGA-55-8614-01 19 52671363 52671363 G A ZNF836 5'UTR 0.14 TCGA-55-8614-01 19 53959274 53959274 C T ZNF761 RNA 0.07 TCGA-55-8614-01 19 54682526 54682526 C A MBOAT7 Silent p.A329A 0.35 TCGA-55-8614-01 19 55538972 55538972 C T GP6 Missense_Mutation p.S195N 0.16 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-55-8614-01 19 58190176 58190176 A T ZSCAN4 Missense_Mutation p.K402M 0.06 deleterious(0.04) possibly_damaging(0.885) TCGA-55-8614-01 19 58384279 58384279 G T ZNF814 Missense_Mutation p.P827T 0.17 deleterious(0) benign(0.142) TCGA-55-8614-01 19 6679480 6679480 G T C3 Missense_Mutation p.P1495Q 0.27 deleterious(0.02) probably_damaging(0.96) TCGA-55-8614-01 19 7585565 7585565 C A ZNF358 Silent p.L479L 0.43 TCGA-55-8614-01 19 8531219 8531219 G A HNRNPM Missense_Mutation p.R244H 0.27 deleterious(0.04) benign(0.216) TCGA-55-8614-01 19 9071213 9071213 G T MUC16 Missense_Mutation p.H5411Q 0.29 unknown(0) TCGA-55-8614-01 1 100472621 100472621 C T SLC35A3 Missense_Mutation p.A125V 0.14 deleterious(0) probably_damaging(0.994) TCGA-55-8614-01 1 100547782 100547782 G C HIAT1 3'UTR 0.27 TCGA-55-8614-01 1 118424490 118424490 C A GDAP2 Missense_Mutation p.R419S 0.19 deleterious(0.01) benign(0.266) TCGA-55-8614-01 1 145474113 145474113 C A ANKRD34A Missense_Mutation p.T262N 0.22 tolerated(0.49) benign(0) TCGA-55-8614-01 1 147094155 147094155 C A BCL9 Missense_Mutation p.P996T 0.22 tolerated(0.39) probably_damaging(0.987) TCGA-55-8614-01 1 151260735 151260735 G A ZNF687 Silent p.P656P 0.15 TCGA-55-8614-01 1 152957953 152957953 C A SPRR1A Missense_Mutation p.Q83K 0.17 deleterious(0.04) possibly_damaging(0.893) TCGA-55-8614-01 1 154950548 154950548 C T CKS1B Nonsense_Mutation p.Q49* 0.20 TCGA-55-8614-01 1 158651412 158651412 G A SPTA1 Silent p.L146L 0.22 TCGA-55-8614-01 1 159169596 159169596 C T CADM3 Silent p.I370I 0.15 TCGA-55-8614-01 1 160011410 160011410 T C KCNJ10 Missense_Mutation p.I305V 0.23 tolerated(0.11) possibly_damaging(0.669) TCGA-55-8614-01 1 160111279 160111279 G A ATP1A2 3'UTR 0.42 TCGA-55-8614-01 1 161047509 161047509 G C PVRL4 Missense_Mutation p.P155R 0.12 deleterious(0.03) possibly_damaging(0.865) TCGA-55-8614-01 1 169364368 169364368 C G CCDC181 Missense_Mutation p.E482Q 0.17 deleterious(0) probably_damaging(0.987) TCGA-55-8614-01 1 169390872 169390872 C T CCDC181 Missense_Mutation p.G266D 0.20 deleterious(0.05) possibly_damaging(0.86) TCGA-55-8614-01 1 196759207 196759207 A T CFHR3 Missense_Mutation p.I216F 0.36 deleterious(0) probably_damaging(0.96) TCGA-55-8614-01 1 204948666 204948666 C A NFASC Missense_Mutation p.R719S 0.13 deleterious(0.03) probably_damaging(0.995) TCGA-55-8614-01 1 212860155 212860155 A G BATF3 Missense_Mutation p.V121A 0.17 tolerated(0.08) benign(0.156) TCGA-55-8614-01 1 216061814 216061814 C G USH2A Missense_Mutation p.G2726A 0.29 probably_damaging(0.988) TCGA-55-8614-01 1 223284789 223284789 T G TLR5 Silent p.R529R 0.13 TCGA-55-8614-01 1 241669303 241669303 C T FH Missense_Mutation p.G302S 0.18 tolerated(0.07) benign(0.086) TCGA-55-8614-01 1 241798804 241798804 G C CHML Missense_Mutation p.L89V 0.22 deleterious(0.03) possibly_damaging(0.68) TCGA-55-8614-01 1 247752467 247752467 G T OR2G2 Missense_Mutation p.R269I 0.20 tolerated(0.28) benign(0.392) TCGA-55-8614-01 1 247978302 247978302 G C OR14A16 Missense_Mutation p.L244V 0.25 tolerated(1) benign(0.01) TCGA-55-8614-01 1 248112982 248112982 G A OR2L8 Missense_Mutation p.V275I 0.17 tolerated(0.19) benign(0.289) TCGA-55-8614-01 1 248262965 248262965 T C OR2L13 Silent p.C96C 0.21 TCGA-55-8614-01 1 248790392 248790392 C A OR2T11 Missense_Mutation p.G13V 0.47 deleterious(0) possibly_damaging(0.84) TCGA-55-8614-01 1 27734775 27734775 C T WASF2 Missense_Mutation p.V469M 0.10 deleterious(0) probably_damaging(0.997) TCGA-55-8614-01 1 29189409 29189409 C T OPRD1 Silent p.L245L 0.21 TCGA-55-8614-01 1 31345915 31345915 C A SDC3 3'Flank 0.23 TCGA-55-8614-01 1 32085284 32085284 C T HCRTR1 Silent p.A117A 0.22 TCGA-55-8614-01 1 32162599 32162599 G A COL16A1 Missense_Mutation p.R277C 0.27 unknown(0) TCGA-55-8614-01 1 32265720 32265720 C T SPOCD1 Missense_Mutation p.G542E 0.24 tolerated(0.07) benign(0.138) TCGA-55-8614-01 1 33945041 33945041 G A ZSCAN20 Missense_Mutation p.R51H 0.36 deleterious(0) probably_damaging(1) TCGA-55-8614-01 1 38463367 38463367 C A FHL3 Missense_Mutation p.R226L 0.25 deleterious(0) benign(0.138) TCGA-55-8614-01 1 42744124 42744124 T C FOXJ3 Silent p.T88T 0.22 TCGA-55-8614-01 1 45553699 45553699 G C ZSWIM5 Missense_Mutation p.S269C 0.21 deleterious(0) unknown(0) TCGA-55-8614-01 1 47489434 47489434 A C CYP4X1 5'UTR 0.32 TCGA-55-8614-01 1 85331448 85331448 T C LPAR3 Missense_Mutation p.N119S 0.17 tolerated(0.16) probably_damaging(0.998) TCGA-55-8614-01 20 20140036 20140036 C A C20orf26 Missense_Mutation p.A325E 0.26 tolerated(0.86) benign(0.002) TCGA-55-8614-01 20 33012316 33012316 C A ITCH Missense_Mutation p.S210Y 0.22 tolerated(0.05) benign(0.025) TCGA-55-8614-01 20 34568393 34568393 C A CNBD2 Missense_Mutation p.P86T 0.07 tolerated(0.22) possibly_damaging(0.454) TCGA-55-8614-01 20 57576628 57576628 C G CTSZ Missense_Mutation p.G127R 0.38 tolerated(0.07) possibly_damaging(0.582) TCGA-55-8614-01 20 60963022 60963022 C T RPS21 Intron 0.44 TCGA-55-8614-01 20 61430359 61430359 G A MRGBP Missense_Mutation p.E129K 0.45 deleterious(0.02) probably_damaging(0.956) TCGA-55-8614-01 21 31587929 31587929 G C CLDN8 Silent p.T105T 0.11 TCGA-55-8614-01 21 36259419 36259419 C A RUNX1 Intron 0.29 TCGA-55-8614-01 21 45999656 45999656 G T KRTAP10-5 Missense_Mutation p.S267Y 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-55-8614-01 21 45999863 45999863 G A KRTAP10-5 Missense_Mutation p.S198L 0.23 tolerated(0.45) benign(0.32) TCGA-55-8614-01 21 45999883 45999883 G C KRTAP10-5 Silent p.V191V 0.21 TCGA-55-8614-01 21 46000253 46000253 G C KRTAP10-5 Missense_Mutation p.S68C 0.28 tolerated(0.15) unknown(0) TCGA-55-8614-01 21 46000480 46000480 G A KRTAP10-5 5'UTR 0.16 TCGA-55-8614-01 21 47423617 47423617 T G COL6A1 Missense_Mutation p.F926C 0.30 tolerated(0.14) benign(0.039) TCGA-55-8614-01 21 47538942 47538943 - G COL6A2 Splice_Site p.X394_splice 0.26 TCGA-55-8614-01 22 16287422 16287422 C G POTEH Missense_Mutation p.G155A 0.03 tolerated(0.06) benign(0.314) TCGA-55-8614-01 22 24896194 24896194 G A UPB1 Missense_Mutation p.G75E 0.21 deleterious(0) probably_damaging(0.991) TCGA-55-8614-01 22 25115798 25115798 C T PIWIL3 Missense_Mutation p.V817I 0.21 deleterious(0) possibly_damaging(0.723) TCGA-55-8614-01 22 31486155 31486155 C T SMTN Missense_Mutation p.T285I 0.09 deleterious(0.02) possibly_damaging(0.52) TCGA-55-8614-01 22 32828470 32828470 G C BPIFC Missense_Mutation p.P347A 0.20 deleterious(0) probably_damaging(1) TCGA-55-8614-01 22 37602869 37602869 C A SSTR3 Missense_Mutation p.R325L 0.40 deleterious(0) probably_damaging(0.998) TCGA-55-8614-01 2 103040304 103040304 C T IL18RAP Missense_Mutation p.S35F 0.20 tolerated(0.24) possibly_damaging(0.569) TCGA-55-8614-01 2 133540585 133540585 C A NCKAP5 Missense_Mutation p.G1267C 0.22 deleterious(0) probably_damaging(1) TCGA-55-8614-01 2 137813996 137813996 G T THSD7B Missense_Mutation p.W49L 0.13 deleterious(0) possibly_damaging(0.504) TCGA-55-8614-01 2 152476160 152476160 A G NEB Silent p.R3559R 0.09 TCGA-55-8614-01 2 159499036 159499047 TCTGGACCACAG - PKP4 In_Frame_Del p.L579_R582del 0.14 TCGA-55-8614-01 2 163302834 163302834 C A KCNH7 Silent p.L416L 0.23 TCGA-55-8614-01 2 169853214 169853214 G A ABCB11 Silent p.S136S 0.22 TCGA-55-8614-01 2 179582881 179582881 C A TTN Missense_Mutation p.Q8284H 0.24 TCGA-55-8614-01 2 179593024 179593024 G - TTN Frame_Shift_Del p.I6510Lfs*36 0.25 TCGA-55-8614-01 2 196825385 196825385 C G DNAH7 Missense_Mutation p.K830N 0.17 deleterious(0.05) benign(0.021) TCGA-55-8614-01 2 203397329 203397329 G A BMPR2 Missense_Mutation p.A384T 0.22 deleterious(0) probably_damaging(0.986) TCGA-55-8614-01 2 210559022 210559022 G T MAP2 Missense_Mutation p.D710Y 0.19 deleterious(0) probably_damaging(1) TCGA-55-8614-01 2 224822353 224822353 C G MRPL44 Missense_Mutation p.P55R 0.13 tolerated(0.07) probably_damaging(0.999) TCGA-55-8614-01 2 228882854 228882854 C G SPHKAP Missense_Mutation p.D906H 0.09 tolerated(0.05) possibly_damaging(0.541) TCGA-55-8614-01 2 239016577 239016577 C - ESPNL Frame_Shift_Del p.L275Sfs*16 0.22 TCGA-55-8614-01 2 27163008 27163008 G T DPYSL5 Missense_Mutation p.D353Y 0.06 deleterious(0) probably_damaging(1) TCGA-55-8614-01 2 37284483 37284483 C T HEATR5B Missense_Mutation p.D734N 0.20 deleterious(0.03) probably_damaging(0.925) TCGA-55-8614-01 2 44428750 44428750 A G PPM1B Missense_Mutation p.M138V 0.19 deleterious(0.02) benign(0.005) TCGA-55-8614-01 2 77746184 77746184 C A LRRTM4 Missense_Mutation p.G271C 0.27 tolerated(0.06) probably_damaging(0.962) TCGA-55-8614-01 2 77746185 77746185 C A LRRTM4 Silent p.P270P 0.25 TCGA-55-8614-01 2 77746451 77746451 T A LRRTM4 Missense_Mutation p.N182Y 0.17 deleterious(0) probably_damaging(1) TCGA-55-8614-01 2 89246983 89246983 C A IGKV1-5 Missense_Mutation p.G63W 0.23 deleterious(0.01) possibly_damaging(0.619) TCGA-55-8614-01 3 108819327 108819327 C G MORC1 Missense_Mutation p.G84A 0.35 deleterious(0) probably_damaging(1) TCGA-55-8614-01 3 113299473 113299473 C T SIDT1 Missense_Mutation p.P194S 0.14 tolerated(0.11) probably_damaging(0.99) TCGA-55-8614-01 3 115560805 115560805 G A LSAMP Missense_Mutation p.T269M 0.27 tolerated(0.21) benign(0.028) TCGA-55-8614-01 3 121412611 121412611 T C GOLGB1 Silent p.E2253E 0.14 TCGA-55-8614-01 3 122630893 122630893 A G SEMA5B Missense_Mutation p.W1028R 0.38 deleterious(0) probably_damaging(1) TCGA-55-8614-01 3 124066005 124066005 G A KALRN Missense_Mutation p.E553K 0.16 tolerated(0.11) unknown(0) TCGA-55-8614-01 3 129210994 129210994 G C IFT122 Missense_Mutation p.R719T 0.09 deleterious(0) probably_damaging(0.996) TCGA-55-8614-01 3 13370300 13370300 G A NUP210 Silent p.H1419H 0.40 TCGA-55-8614-01 3 147128332 147128332 G A ZIC1 Missense_Mutation p.G145R 0.07 deleterious(0) probably_damaging(1) TCGA-55-8614-01 3 156746008 156746008 A G LEKR1 Silent p.K495K 0.43 TCGA-55-8614-01 3 179754433 179754433 T C PEX5L 5'UTR 0.19 TCGA-55-8614-01 3 180397239 180397239 G C CCDC39 5'UTR 0.20 TCGA-55-8614-01 3 182947512 182947512 G C MCF2L2 Missense_Mutation p.Q663E 0.07 tolerated(0.13) benign(0.14) TCGA-55-8614-01 3 184094129 184094129 A T THPO 5'UTR 0.41 TCGA-55-8614-01 3 38622738 38622738 C T SCN5A Missense_Mutation p.R971H 0.25 tolerated(0.32) benign(0.004) TCGA-55-8614-01 3 97852150 97852150 A T OR5H1 Silent p.S203S 0.25 TCGA-55-8614-01 4 103537848 103537848 A T NFKB1 3'UTR 0.16 TCGA-55-8614-01 4 113189609 113189609 A G AP1AR 3'UTR 0.31 TCGA-55-8614-01 4 119145660 119145660 G C NDST3 Missense_Mutation p.M518I 0.30 deleterious(0) possibly_damaging(0.885) TCGA-55-8614-01 4 120549823 120549823 C G PDE5A Missense_Mutation p.E2Q 0.17 deleterious_low_confidence(0) benign(0.403) TCGA-55-8614-01 4 134073493 134073493 T A PCDH10 Missense_Mutation p.M733K 0.15 deleterious(0) benign(0.178) TCGA-55-8614-01 4 155250847 155250847 C A DCHS2 Missense_Mutation p.W794L 0.13 deleterious(0) possibly_damaging(0.77) TCGA-55-8614-01 4 155487073 155487073 C T FGB Silent p.A76A 0.09 TCGA-55-8614-01 4 173232862 173232862 T C GALNTL6 Silent p.N115N 0.24 TCGA-55-8614-01 4 174216609 174216609 C T GALNT7 Nonsense_Mutation p.R273* 0.26 TCGA-55-8614-01 4 187540652 187540652 A G FAT1 Missense_Mutation p.V2363A 0.20 benign(0.202) TCGA-55-8614-01 4 66217256 66217256 C A EPHA5 Nonsense_Mutation p.G787* 0.37 TCGA-55-8614-01 4 69095089 69095089 C T TMPRSS11B Missense_Mutation p.E278K 0.32 tolerated(0.31) benign(0.092) TCGA-55-8614-01 4 845594 845594 G A GAK Missense_Mutation p.S1151L 0.35 tolerated(0.46) benign(0) TCGA-55-8614-01 4 87691007 87691007 A T PTPN13 Missense_Mutation p.Q1530H 0.22 deleterious(0.03) probably_damaging(0.959) TCGA-55-8614-01 4 90848999 90848999 C G MMRN1 Missense_Mutation p.L337V 0.19 tolerated(0.22) benign(0.008) TCGA-55-8614-01 4 90872809 90872809 A G MMRN1 Missense_Mutation p.N1058D 0.14 tolerated(0.05) benign(0.023) TCGA-55-8614-01 4 95229827 95229827 G A HPGDS Silent p.F98F 0.08 TCGA-55-8614-01 5 102309984 102309984 G T PAM Missense_Mutation p.G443C 0.14 tolerated(0.19) probably_damaging(0.999) TCGA-55-8614-01 5 131879031 131879031 T C IL5 Missense_Mutation p.N47S 0.30 tolerated(0.06) benign(0.049) TCGA-55-8614-01 5 14485256 14485256 G T TRIO Missense_Mutation p.V2246L 0.55 benign(0.031) TCGA-55-8614-01 5 147929769 147929769 G A HTR4 Missense_Mutation p.T28M 0.30 tolerated(0.22) benign(0.007) TCGA-55-8614-01 5 19839003 19839003 G A CDH18 Silent p.I31I 0.04 TCGA-55-8614-01 5 23522494 23522494 C T PRDM9 Missense_Mutation p.P197L 0.06 tolerated(0.05) possibly_damaging(0.856) TCGA-55-8614-01 5 24491745 24491745 G C CDH10 Missense_Mutation p.P606A 0.08 tolerated(0.24) probably_damaging(0.956) TCGA-55-8614-01 5 32417829 32417829 T C ZFR Silent p.Q163Q 0.06 TCGA-55-8614-01 5 33937451 33937451 C T RXFP3 Silent p.C202C 0.10 TCGA-55-8614-01 5 38485975 38485975 T C LIFR Missense_Mutation p.T815A 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-8614-01 5 80382675 80382675 C T RASGRF2 Silent p.S431S 0.29 TCGA-55-8614-01 6 109798036 109798036 G T ZBTB24 Nonsense_Mutation p.Y350* 0.24 TCGA-55-8614-01 6 118801677 118801677 C G CEP85L Splice_Site p.X585_splice 0.32 TCGA-55-8614-01 6 118804879 118804879 T C CEP85L Missense_Mutation p.Q530R 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-55-8614-01 6 12123028 12123028 C T HIVEP1 Silent p.S1000S 0.14 TCGA-55-8614-01 6 130407385 130407385 A T L3MBTL3 Missense_Mutation p.H503L 0.09 deleterious(0) possibly_damaging(0.814) TCGA-55-8614-01 6 144878442 144878442 A G UTRN Silent p.K2428K 0.18 TCGA-55-8614-01 6 159653636 159653636 C T FNDC1 Missense_Mutation p.R698W 0.12 deleterious_low_confidence(0.03) unknown(0) TCGA-55-8614-01 6 161574506 161574506 C A AGPAT4 Missense_Mutation p.R179L 0.15 deleterious(0) probably_damaging(0.99) TCGA-55-8614-01 6 26468489 26468490 GG T BTN2A1 Frame_Shift_Del p.A433Pfs*11 0.19 TCGA-55-8614-01 6 30865369 30865369 C T DDR1 Silent p.T743T 0.43 TCGA-55-8614-01 6 35088799 35088799 C T TCP11 Missense_Mutation p.R214Q 0.33 deleterious(0.04) benign(0) TCGA-55-8614-01 6 35289260 35289260 C G DEF6 3'UTR 0.29 TCGA-55-8614-01 6 35437005 35437005 G T RPL10A Intron 0.27 TCGA-55-8614-01 6 3850393 3850393 G T FAM50B Missense_Mutation p.K116N 0.24 tolerated(0.1) benign(0.392) TCGA-55-8614-01 6 38794142 38794142 T C DNAH8 Missense_Mutation p.M1136T 0.34 benign(0.002) TCGA-55-8614-01 6 4125494 4125494 G A ECI2 Missense_Mutation p.A262V 0.25 deleterious(0.02) probably_damaging(0.979) TCGA-55-8614-01 6 70408994 70408994 T C LMBRD1 Missense_Mutation p.M427V 0.30 tolerated(0.22) benign(0.006) TCGA-55-8614-01 6 74207496 74207496 A G MTO1 Silent p.E638E 0.34 TCGA-55-8614-01 6 75994419 75994419 T C TMEM30A 5'UTR 0.24 TCGA-55-8614-01 6 84649818 84649818 A T CYB5R4 Silent p.I384I 0.24 TCGA-55-8614-01 6 89977478 89977478 G T GABRR2 Missense_Mutation p.T219K 0.20 deleterious(0.04) probably_damaging(0.95) TCGA-55-8614-01 7 100350647 100350647 G A ZAN Silent p.T973T 0.23 TCGA-55-8614-01 7 100676303 100676303 G T MUC17 Missense_Mutation p.V536F 0.23 probably_damaging(0.964) TCGA-55-8614-01 7 111503514 111503514 G C DOCK4 Missense_Mutation p.T796S 0.14 tolerated(1) benign(0.001) TCGA-55-8614-01 7 143807325 143807325 A G OR2A2 Missense_Mutation p.Y217C 0.20 deleterious(0.01) probably_damaging(0.988) TCGA-55-8614-01 7 148544276 148544276 T C EZH2 Missense_Mutation p.K39E 0.23 deleterious(0) possibly_damaging(0.714) TCGA-55-8614-01 7 158424352 158424352 G A NCAPG2 3'UTR 0.19 TCGA-55-8614-01 7 27182792 27182793 - G HOXA5 Frame_Shift_Ins p.A146Gfs*43 0.13 TCGA-55-8614-01 7 35293170 35293170 G T TBX20 Missense_Mutation p.A21D 0.26 tolerated(0.3) possibly_damaging(0.748) TCGA-55-8614-01 7 45005264 45005264 G C MYO1G Missense_Mutation p.Q785E 0.17 tolerated(1) probably_damaging(0.966) TCGA-55-8614-01 7 50737524 50737524 T C GRB10 Silent p.S133S 0.14 TCGA-55-8614-01 7 73153056 73153056 G A ABHD11 Silent p.L24L 0.23 TCGA-55-8614-01 7 82585009 82585009 G C PCLO Missense_Mutation p.Q1754E 0.19 unknown(0) TCGA-55-8614-01 8 104948877 104948877 G A RIMS2 Missense_Mutation p.R825Q 0.36 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-55-8614-01 8 109254088 109254088 T G EIF3E Missense_Mutation p.N49H 0.37 deleterious(0.03) probably_damaging(0.99) TCGA-55-8614-01 8 113518984 113518984 T C CSMD3 Missense_Mutation p.S1611G 0.35 tolerated(1) probably_damaging(0.999) TCGA-55-8614-01 8 139603727 139603727 C T COL22A1 Missense_Mutation p.G1545S 0.07 unknown(0) TCGA-55-8614-01 8 144557623 144557623 G C ZC3H3 Silent p.L616L 0.32 TCGA-55-8614-01 8 145579332 145579332 C A FBXL6 Silent p.V493V 0.13 TCGA-55-8614-01 8 71581332 71581332 G A LACTB2 Silent p.V8V 0.24 TCGA-55-8614-01 8 73850047 73850047 A C KCNB2 Silent p.P819P 0.24 TCGA-55-8614-01 8 77768080 77768080 G T ZFHX4 Missense_Mutation p.V2975L 0.30 probably_damaging(0.949) TCGA-55-8614-01 8 88885913 88885913 C A DCAF4L2 Missense_Mutation p.G96V 0.18 deleterious(0) possibly_damaging(0.862) TCGA-55-8614-01 8 92988179 92988180 - T RUNX1T1 Frame_Shift_Ins p.H445Qfs*17 0.16 TCGA-55-8614-01 8 94745756 94745756 C T RBM12B Silent p.E961E 0.33 TCGA-55-8614-01 8 99148736 99148736 G A POP1 Silent p.A346A 0.07 TCGA-55-8614-01 9 138649216 138649216 G A KCNT1 Missense_Mutation p.E250K 0.40 deleterious(0.03) benign(0.141) TCGA-55-8614-01 9 139913463 139913463 C T ABCA2 Silent p.P538P 0.12 TCGA-55-8614-01 9 21481248 21481248 C A IFNE Missense_Mutation p.R149L 0.36 tolerated(0.09) benign(0.41) TCGA-55-8614-01 9 82337478 82337478 A T TLE4 Missense_Mutation p.H700L 0.25 deleterious(0) probably_damaging(1) TCGA-55-8614-01 9 86004518 86004518 C T FRMD3 Splice_Site p.X84_splice 0.27 TCGA-55-8614-01 X 105075045 105075045 A T NRK Splice_Site p.X20_splice 0.37 TCGA-55-8614-01 X 127185760 127185760 C A ACTRT1 Silent p.V142V 0.37 TCGA-55-8614-01 X 128975778 128975778 T A ZDHHC9 Silent p.T48T 0.04 TCGA-55-8614-01 X 140335791 140335791 T A SPANXC Silent p.L51L 0.21 TCGA-55-8614-01 X 140336631 140336631 A T SPANXC 5'Flank 0.23 TCGA-55-8614-01 X 140785755 140785755 C T SPANXD Missense_Mutation p.R54H 0.45 tolerated(0.55) possibly_damaging(0.862) TCGA-55-8614-01 X 144905067 144905067 C A SLITRK2 Missense_Mutation p.T375N 0.44 tolerated(0.05) benign(0.147) TCGA-55-8614-01 X 34962752 34962752 A T FAM47B Nonsense_Mutation p.R602* 0.41 TCGA-55-8614-01 X 70344993 70344993 C T MED12 Silent p.P741P 0.21 TCGA-55-8614-01 X 79965005 79965005 T C BRWD3 Silent p.T799T 0.23 TCGA-55-8614-01 X 86877260 86877260 C T KLHL4 Missense_Mutation p.A325V 0.47 tolerated(0.59) benign(0.011) TCGA-55-8614-01 Y 15363031 15363031 T - UTY Frame_Shift_Del p.S1295Afs*8 0.28 TCGA-55-8615-01 10 106214253 106214253 G A CCDC147 Missense_Mutation p.G862R 0.10 deleterious(0) probably_damaging(0.991) TCGA-55-8615-01 10 18270309 18270309 G T SLC39A12 Missense_Mutation p.E331D 0.14 tolerated(0.17) possibly_damaging(0.452) TCGA-55-8615-01 10 44139763 44139763 T G ZNF32 Missense_Mutation p.E186A 0.09 deleterious(0) probably_damaging(0.935) TCGA-55-8615-01 10 75843123 75843123 G T VCL Splice_Site p.X292_splice 0.18 TCGA-55-8615-01 10 85992334 85992334 A T LRIT1 Silent p.L407L 0.19 TCGA-55-8615-01 10 88854406 88854406 G T GLUD1 Missense_Mutation p.P41T 0.58 tolerated(0.14) unknown(0) TCGA-55-8615-01 10 92680826 92680826 A G ANKRD1 5'UTR 0.12 TCGA-55-8615-01 11 117869643 117869643 C G IL10RA Missense_Mutation p.P342A 0.67 tolerated(0.12) benign(0.043) TCGA-55-8615-01 11 1272612 1272612 C G MUC5B Silent p.S4834S 0.15 TCGA-55-8615-01 11 15243128 15243128 C T INSC Silent p.L356L 0.14 TCGA-55-8615-01 11 21594927 21594927 G T NELL1 Missense_Mutation p.G785V 0.14 deleterious(0.01) possibly_damaging(0.466) TCGA-55-8615-01 11 6913439 6913439 G A OR2D2 Missense_Mutation p.A98V 0.13 tolerated(0.49) benign(0.005) TCGA-55-8615-01 11 89531678 89531678 T G TRIM49 Missense_Mutation p.S327R 0.06 tolerated(0.18) benign(0.025) TCGA-55-8615-01 12 108918236 108918236 A C SART3 Silent p.A857A 0.20 TCGA-55-8615-01 12 133732744 133732744 G T ZNF10 Silent p.R304R 0.30 TCGA-55-8615-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.42 deleterious(0.04) probably_damaging(0.993) TCGA-55-8615-01 12 2705056 2705056 C A CACNA1C Missense_Mutation p.H894N 0.24 deleterious(0.03) benign(0.099) TCGA-55-8615-01 12 27553498 27553498 T A ARNTL2 Silent p.T317T 0.27 TCGA-55-8615-01 12 2937101 2937101 G T NRIP2 Missense_Mutation p.Q231K 0.23 tolerated(0.29) benign(0.034) TCGA-55-8615-01 12 29628035 29628035 C A OVCH1 Missense_Mutation p.R520L 0.18 tolerated(0.07) benign(0.018) TCGA-55-8615-01 12 41831699 41831699 C G PDZRN4 Intron 0.20 TCGA-55-8615-01 12 47629121 47629121 A G PCED1B Missense_Mutation p.Y92C 0.43 deleterious(0) probably_damaging(1) TCGA-55-8615-01 12 51398615 51398615 T A SLC11A2 Missense_Mutation p.T158S 0.11 tolerated(0.16) benign(0.182) TCGA-55-8615-01 12 57567573 57567573 C T LRP1 Silent p.I1119I 0.10 TCGA-55-8615-01 12 57619244 57619244 G A NXPH4 Missense_Mutation p.G214E 0.45 tolerated_low_confidence(0.42) probably_damaging(0.994) TCGA-55-8615-01 12 6933929 6933929 T C GPR162 Silent p.L289L 0.45 TCGA-55-8615-01 12 78542632 78542632 A T NAV3 Missense_Mutation p.K1573I 0.22 deleterious(0) probably_damaging(0.999) TCGA-55-8615-01 12 81734876 81734876 A T PPFIA2 Missense_Mutation p.Y792N 0.39 tolerated(0.31) benign(0.007) TCGA-55-8615-01 12 93164025 93164025 T G PLEKHG7 3'UTR 0.12 TCGA-55-8615-01 13 102235664 102235664 T A ITGBL1 Missense_Mutation p.C276S 0.06 deleterious(0) probably_damaging(0.978) TCGA-55-8615-01 13 24895903 24895903 G A C1QTNF9 Silent p.P333P 0.17 TCGA-55-8615-01 13 44442842 44442842 C G CCDC122 Silent p.L48L 0.25 TCGA-55-8615-01 13 70681845 70681845 A - KLHL1 5'UTR 0.37 TCGA-55-8615-01 14 20612771 20612771 G T OR4N5 Nonsense_Mutation p.E293* 0.31 TCGA-55-8615-01 14 23564368 23564368 G T ACIN1 Missense_Mutation p.P43Q 0.33 probably_damaging(0.997) TCGA-55-8615-01 14 54884582 54884582 A G CDKN3 Silent p.L155L 0.67 TCGA-55-8615-01 14 94187868 94187868 A G PRIMA1 Silent p.N128N 0.23 TCGA-55-8615-01 14 95081408 95081408 C T SERPINA3 Silent p.Y210Y 0.11 TCGA-55-8615-01 15 40587216 40587216 G T PLCB2 Silent p.R609R 0.36 TCGA-55-8615-01 15 41961656 41961656 A G MGA Silent p.Q188Q 0.37 TCGA-55-8615-01 15 48903020 48903020 A G FBN1 Missense_Mutation p.I84T 0.15 probably_damaging(0.966) TCGA-55-8615-01 15 49917603 49917603 C A DTWD1 Missense_Mutation p.P80H 0.32 deleterious(0.03) possibly_damaging(0.599) TCGA-55-8615-01 15 89837159 89837159 T C FANCI Missense_Mutation p.M796T 0.46 tolerated(0.64) benign(0) TCGA-55-8615-01 16 16297439 16297439 C A ABCC6 Missense_Mutation p.G276C 0.08 deleterious(0.03) possibly_damaging(0.592) TCGA-55-8615-01 16 19236033 19236033 T C SYT17 Silent p.H367H 0.33 TCGA-55-8615-01 16 2569669 2569669 A G ATP6V0C Missense_Mutation p.M131V 0.13 deleterious(0.01) possibly_damaging(0.588) TCGA-55-8615-01 16 57983331 57983331 C - CNGB1 Frame_Shift_Del p.I350Lfs*23 0.30 TCGA-55-8615-01 16 66887432 66887432 C T CA7 3'UTR 0.21 TCGA-55-8615-01 17 10362583 10362583 G A MYH4 Silent p.I524I 0.28 TCGA-55-8615-01 17 17124800 17124800 C A FLCN Intron 0.35 TCGA-55-8615-01 17 25970600 25970600 C T LGALS9 Missense_Mutation p.S165F 0.40 tolerated(0.07) benign(0.005) TCGA-55-8615-01 17 26604107 26604107 C A AC061975.8 5'Flank 0.13 TCGA-55-8615-01 17 26887088 26887088 G C PIGS Silent p.G266G 0.46 TCGA-55-8615-01 17 26942151 26942151 C A KIAA0100 Silent p.R2213R 0.54 TCGA-55-8615-01 17 64880761 64880761 T A CACNG5 Missense_Mutation p.S185T 0.21 deleterious(0.02) possibly_damaging(0.882) TCGA-55-8615-01 17 74475272 74475272 C T RHBDF2 Missense_Mutation p.M149I 0.25 tolerated(0.2) benign(0.001) TCGA-55-8615-01 17 7699788 7699788 C A DNAH2 Missense_Mutation p.Q2561K 0.12 possibly_damaging(0.595) TCGA-55-8615-01 18 14543000 14543000 T C POTEC Missense_Mutation p.H49R 0.12 deleterious_low_confidence(0.02) benign(0.227) TCGA-55-8615-01 18 44030744 44030744 C - RNF165 Frame_Shift_Del p.H268Tfs*40 0.26 TCGA-55-8615-01 19 1220640 1220640 C T STK11 Nonsense_Mutation p.Q220* 0.75 TCGA-55-8615-01 19 18367960 18367960 A G KIAA1683 3'UTR 0.21 TCGA-55-8615-01 19 22270960 22270960 T A ZNF257 Nonsense_Mutation p.C136* 0.25 TCGA-55-8615-01 19 2717862 2717862 C G AC006538.4 Silent p.G74G 0.50 TCGA-55-8615-01 19 35250893 35250893 C T ZNF599 Silent p.T271T 0.34 TCGA-55-8615-01 19 40325327 40325327 C A FBL Missense_Mutation p.V308L 0.32 tolerated(0.17) benign(0.153) TCGA-55-8615-01 19 45885799 45885799 G A PPP1R13L Missense_Mutation p.R812W 0.08 deleterious(0) probably_damaging(0.962) TCGA-55-8615-01 19 51506215 51506215 G T KLK9 3'UTR 0.19 TCGA-55-8615-01 19 51506357 51506358 GC - KLK9 3'UTR 0.14 TCGA-55-8615-01 19 54744957 54744977 CAGGACAGGGCCCTGCAGGGT - LILRA6 In_Frame_Del p.T229_L235del 0.12 TCGA-55-8615-01 19 55178154 55178154 C - LILRB4 Frame_Shift_Del p.V333* 0.17 TCGA-55-8615-01 19 8539051 8539051 G T HNRNPM Missense_Mutation p.G348V 0.25 deleterious(0.01) benign(0.007) TCGA-55-8615-01 1 100928388 100928388 C G CDC14A Missense_Mutation p.F263L 0.31 deleterious(0) probably_damaging(0.931) TCGA-55-8615-01 1 145414757 145414757 G A HFE2 5'UTR 0.12 TCGA-55-8615-01 1 145522532 145522532 C G PEX11B Silent p.L131L 0.48 TCGA-55-8615-01 1 154544244 154544244 C T CHRNB2 Silent p.S315S 0.45 TCGA-55-8615-01 1 171252348 171252348 C A FMO1 Missense_Mutation p.P417T 0.11 tolerated(0.59) benign(0.331) TCGA-55-8615-01 1 175092699 175092699 T G TNN Silent p.T938T 0.30 TCGA-55-8615-01 1 177030277 177030277 G A ASTN1 Silent p.P136P 0.15 TCGA-55-8615-01 1 18152816 18152816 C A ACTL8 Missense_Mutation p.N301K 0.41 deleterious(0) probably_damaging(0.976) TCGA-55-8615-01 1 197297746 197297746 C A CRB1 Missense_Mutation p.P89T 0.53 tolerated(0.23) benign(0.084) TCGA-55-8615-01 1 20073003 20073003 C T TMCO4 Missense_Mutation p.A235T 0.30 tolerated(0.18) probably_damaging(0.994) TCGA-55-8615-01 1 211280664 211280664 G T KCNH1 Missense_Mutation p.S45R 0.08 tolerated(0.07) probably_damaging(0.986) TCGA-55-8615-01 1 216591874 216591874 C A USH2A Missense_Mutation p.W211C 0.23 probably_damaging(0.994) TCGA-55-8615-01 1 234510059 234510059 T C COA6 Missense_Mutation p.L69S 0.27 deleterious(0) probably_damaging(0.999) TCGA-55-8615-01 1 241886621 241886621 G T WDR64 Missense_Mutation p.L349F 0.31 deleterious(0) probably_damaging(1) TCGA-55-8615-01 1 2441345 2441345 C A PANK4 Silent p.L688L 0.38 TCGA-55-8615-01 1 247695263 247695263 A T OR2C3 Missense_Mutation p.L184H 0.37 deleterious(0) probably_damaging(1) TCGA-55-8615-01 1 248263418 248263418 G A OR2L13 Silent p.V247V 0.15 TCGA-55-8615-01 1 248458777 248458777 G C OR2T12 Missense_Mutation p.T35S 0.17 tolerated(0.07) benign(0.013) TCGA-55-8615-01 1 36520728 36520728 T A AGO3 Missense_Mutation p.V819E 0.42 tolerated(1) benign(0.35) TCGA-55-8615-01 1 70877090 70877090 C A CTH 5'UTR 0.23 TCGA-55-8615-01 1 70877091 70877091 G T CTH 5'UTR 0.24 TCGA-55-8615-01 1 75609565 75609565 G T LHX8 Nonsense_Mutation p.E216* 0.35 TCGA-55-8615-01 1 92224203 92224203 C A TGFBR3 Missense_Mutation p.E117D 0.44 deleterious(0.04) benign(0.32) TCGA-55-8615-01 1 93312897 93312897 T A FAM69A Missense_Mutation p.D106V 0.50 tolerated(0.28) benign(0.021) TCGA-55-8615-01 20 25456786 25456786 G A NINL Silent p.T1047T 0.19 TCGA-55-8615-01 20 37581025 37581025 C T FAM83D Silent p.S570S 0.26 TCGA-55-8615-01 20 40126142 40126142 C T CHD6 Splice_Site p.X325_splice 0.24 TCGA-55-8615-01 20 47266679 47266679 C A PREX1 Silent p.P961P 0.17 TCGA-55-8615-01 20 50090662 50090662 A C NFATC2 Silent p.L521L 0.23 TCGA-55-8615-01 20 60318792 60318792 G T CDH4 Missense_Mutation p.A115S 0.54 tolerated(0.07) benign(0.441) TCGA-55-8615-01 21 31933439 31933439 T A KRTAP19-7 Missense_Mutation p.Y57F 0.16 tolerated_low_confidence(0.2) unknown(0) TCGA-55-8615-01 21 32253606 32253606 G C KRTAP11-1 Missense_Mutation p.P80A 0.13 deleterious(0.01) possibly_damaging(0.57) TCGA-55-8615-01 21 45053213 45053213 C G HSF2BP Silent p.A127A 0.16 TCGA-55-8615-01 21 47552155 47552155 G C COL6A2 Missense_Mutation p.V917L 0.23 tolerated(0.37) possibly_damaging(0.503) TCGA-55-8615-01 22 17073398 17073398 G A CCT8L2 Silent p.L15L 0.30 TCGA-55-8615-01 22 17073399 17073399 C A CCT8L2 Silent p.R14R 0.30 TCGA-55-8615-01 2 141747214 141747214 C G LRP1B Missense_Mutation p.C886S 0.20 possibly_damaging(0.845) TCGA-55-8615-01 2 179410280 179410280 G T TTN Missense_Mutation p.R31853S 0.15 TCGA-55-8615-01 2 179642721 179642721 C - TTN Intron 0.22 TCGA-55-8615-01 2 210558531 210558531 A C MAP2 Missense_Mutation p.K546T 0.05 tolerated_low_confidence(0.07) benign(0.392) TCGA-55-8615-01 2 210558906 210558906 G A MAP2 Missense_Mutation p.R671K 0.28 tolerated_low_confidence(0.05) probably_damaging(0.998) TCGA-55-8615-01 2 39996966 39996966 C T THUMPD2 Missense_Mutation p.E186K 0.12 tolerated(0.14) benign(0.075) TCGA-55-8615-01 2 54021509 54021509 G C ERLEC1 Missense_Mutation p.D64H 0.06 deleterious(0.01) possibly_damaging(0.823) TCGA-55-8615-01 2 74688553 74688553 C T MOGS Missense_Mutation p.R788H 0.09 deleterious(0) probably_damaging(0.987) TCGA-55-8615-01 2 85529723 85529723 G C TCF7L1 Missense_Mutation p.E214D 0.80 tolerated(1) benign(0.137) TCGA-55-8615-01 2 88870405 88870405 A G EIF2AK3 Missense_Mutation p.M991T 0.68 deleterious(0) probably_damaging(0.999) TCGA-55-8615-01 3 108219048 108219048 G C MYH15 Missense_Mutation p.A158G 0.25 tolerated(0.16) probably_damaging(0.947) TCGA-55-8615-01 3 50684208 50684208 C T MAPKAPK3 Silent p.P289P 0.73 TCGA-55-8615-01 3 78710311 78710311 G A ROBO1 Missense_Mutation p.T730M 0.17 tolerated(0.05) possibly_damaging(0.807) TCGA-55-8615-01 4 107230101 107230101 T A TBCK Missense_Mutation p.D6V 0.29 deleterious(0.01) benign(0.323) TCGA-55-8615-01 4 167656097 167656097 C T SPOCK3 Missense_Mutation p.G429D 0.12 tolerated_low_confidence(0.08) unknown(0) TCGA-55-8615-01 4 44450630 44450630 C G KCTD8 5'UTR 0.22 TCGA-55-8615-01 4 68784777 68784777 C T TMPRSS11A Missense_Mutation p.R292H 0.20 tolerated(0.84) benign(0.201) TCGA-55-8615-01 4 69179804 69179804 T A YTHDC1 3'UTR 0.18 TCGA-55-8615-01 5 134871293 134871293 C T NEUROG1 Missense_Mutation p.E30K 0.50 deleterious(0.02) benign(0.242) TCGA-55-8615-01 5 140201950 140201950 A T PCDHA5 Missense_Mutation p.K197I 0.23 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-55-8615-01 5 145859638 145859638 G T TCERG1 Missense_Mutation p.V623F 0.31 deleterious(0.04) unknown(0) TCGA-55-8615-01 5 154394277 154394277 G T KIF4B Silent p.V286V 0.32 TCGA-55-8615-01 5 156964947 156964947 G A ADAM19 Missense_Mutation p.P102S 0.27 tolerated(0.1) benign(0.021) TCGA-55-8615-01 5 156964975 156964975 T G ADAM19 Silent p.T92T 0.30 TCGA-55-8615-01 5 16670832 16670832 C A MYO10 Nonsense_Mutation p.G1896* 0.14 TCGA-55-8615-01 5 167855769 167855769 G A WWC1 Silent p.A659A 0.06 TCGA-55-8615-01 5 180662002 180662002 A G TRIM41 3'UTR 0.06 TCGA-55-8615-01 5 23527089 23527089 C A PRDM9 Missense_Mutation p.T631K 0.18 deleterious(0) probably_damaging(0.949) TCGA-55-8615-01 5 37169397 37169397 T A C5orf42 Silent p.T2243T 0.13 TCGA-55-8615-01 5 43245704 43245704 G A NIM1K 5'UTR 0.32 TCGA-55-8615-01 5 5200294 5200294 G A ADAMTS16 Missense_Mutation p.G455S 0.24 deleterious(0) probably_damaging(1) TCGA-55-8615-01 5 79030054 79030054 A T CMYA5 Missense_Mutation p.K1822N 0.24 benign(0.074) TCGA-55-8615-01 6 107955650 107955650 G A SOBP Silent p.P534P 0.16 TCGA-55-8615-01 6 121452773 121452773 C A TBC1D32 Missense_Mutation p.A967S 0.48 deleterious(0.02) benign(0.138) TCGA-55-8615-01 6 130762771 130762771 C A TMEM200A Silent p.R402R 0.39 TCGA-55-8615-01 6 24145932 24145932 A C NRSN1 Missense_Mutation p.K116Q 0.12 tolerated(0.19) benign(0.021) TCGA-55-8615-01 6 2680456 2680456 T A MYLK4 Nonsense_Mutation p.R253* 0.28 TCGA-55-8615-01 6 31777797 31777797 C A HSPA1L 3'UTR 0.48 TCGA-55-8615-01 6 35762872 35762872 G T CLPS 3'UTR 0.20 TCGA-55-8615-01 6 37358709 37358709 G T RNF8 3'UTR 0.24 TCGA-55-8615-01 6 43014810 43014810 C A CUL7 Silent p.L819L 0.42 TCGA-55-8615-01 6 49705106 49705106 T A CRISP3 Missense_Mutation p.T25S 0.24 tolerated(0.16) benign(0.037) TCGA-55-8615-01 6 70926781 70926781 T G COL9A1 Missense_Mutation p.D862A 0.09 possibly_damaging(0.884) TCGA-55-8615-01 6 73843264 73843264 C A KCNQ5 Silent p.G475G 0.12 TCGA-55-8615-01 7 100228605 100228605 G C TFR2 Missense_Mutation p.P393A 0.24 tolerated(0.07) possibly_damaging(0.788) TCGA-55-8615-01 7 21599382 21599382 G A DNAH11 Missense_Mutation p.R285K 0.69 benign(0.002) TCGA-55-8615-01 7 45747981 45747981 G T ADCY1 Silent p.T950T 0.76 TCGA-55-8615-01 7 84636129 84636129 G T SEMA3D Missense_Mutation p.H633N 0.28 tolerated(0.34) benign(0.16) TCGA-55-8615-01 7 88962737 88962737 G T ZNF804B Missense_Mutation p.Q147H 0.22 tolerated(0.1) probably_damaging(0.966) TCGA-55-8615-01 7 98515272 98515272 C A TRRAP Missense_Mutation p.H864Q 0.32 probably_damaging(0.998) TCGA-55-8615-01 8 110534559 110534559 G T PKHD1L1 Missense_Mutation p.W4059L 0.24 deleterious(0) probably_damaging(0.972) TCGA-55-8615-01 8 116616440 116616440 T A TRPS1 Missense_Mutation p.S586C 0.61 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-55-8615-01 8 133740143 133740143 T A TMEM71 Missense_Mutation p.I174F 0.22 tolerated(0.18) possibly_damaging(0.493) TCGA-55-8615-01 8 39695768 39695768 G A ADAM2 5'UTR 0.32 TCGA-55-8615-01 8 51705390 51705390 C T SNTG1 3'UTR 0.24 TCGA-55-8615-01 8 7721245 7721245 C A SPAG11A 3'UTR 0.25 TCGA-55-8615-01 8 87951855 87951855 C T CNBD1 Missense_Mutation p.H102Y 0.10 tolerated(1) benign(0) TCGA-55-8615-01 9 18684735 18684735 A C ADAMTSL1 Missense_Mutation p.K504T 0.11 deleterious(0) probably_damaging(0.946) TCGA-55-8615-01 9 21854737 21854737 C T MTAP Silent p.F186F 0.19 TCGA-55-8615-01 X 102974030 102974030 G T GLRA4 Silent p.L296L 0.51 TCGA-55-8615-01 X 1428639 1428639 G A CSF2RA 3'UTR 0.35 TCGA-55-8615-01 X 27766805 27766805 G A DCAF8L2 Missense_Mutation p.S598N 0.75 tolerated(0.49) benign(0.002) TCGA-55-8615-01 X 48823522 48823523 - G KCND1 Intron 0.12 TCGA-55-8616-01 10 102509612 102509612 C A PAX2 Silent p.P51P 0.36 TCGA-55-8616-01 10 105177627 105177627 G T PDCD11 Nonsense_Mutation p.E617* 0.33 TCGA-55-8616-01 10 118359556 118359556 C A PNLIPRP1 Intron 0.21 TCGA-55-8616-01 10 118434473 118434473 G A HSPA12A Missense_Mutation p.P616L 0.25 deleterious(0.04) benign(0.029) TCGA-55-8616-01 10 1262956 1262956 C G ADARB2 Missense_Mutation p.Q539H 0.09 deleterious(0.01) probably_damaging(0.987) TCGA-55-8616-01 10 135372442 135372442 G T SYCE1 Silent p.A70A 0.21 TCGA-55-8616-01 10 15600156 15600156 G T ITGA8 Silent p.R895R 0.35 TCGA-55-8616-01 10 16911709 16911709 C A CUBN Missense_Mutation p.S3127I 0.30 tolerated(0.16) benign(0.367) TCGA-55-8616-01 10 1779313 1779313 G A ADARB2 Missense_Mutation p.S11F 0.09 tolerated_low_confidence(0.07) unknown(0) TCGA-55-8616-01 10 20568785 20568785 A T PLXDC2 3'UTR 0.16 TCGA-55-8616-01 10 22207777 22207777 A T DNAJC1 Missense_Mutation p.H220Q 0.39 tolerated(0.54) benign(0.024) TCGA-55-8616-01 10 25755615 25755615 G T GPR158 Silent p.T457T 0.27 TCGA-55-8616-01 10 27702363 27702363 G T PTCHD3 Missense_Mutation p.Q273K 0.38 tolerated(0.32) benign(0.021) TCGA-55-8616-01 10 31809312 31809312 C T ZEB1 Missense_Mutation p.P351L 0.29 deleterious(0) probably_damaging(0.987) TCGA-55-8616-01 10 32573856 32573856 G A EPC1 Missense_Mutation p.T505I 0.31 tolerated(0.09) probably_damaging(0.959) TCGA-55-8616-01 10 410319 410319 C A DIP2C Silent p.R824R 0.19 TCGA-55-8616-01 10 48426594 48426594 G A GDF10 Silent p.S471S 0.12 TCGA-55-8616-01 10 48428877 48428877 G A GDF10 Missense_Mutation p.R337C 0.09 deleterious(0) probably_damaging(0.994) TCGA-55-8616-01 10 50681075 50681075 C G ERCC6 Splice_Site p.X904_splice 0.17 TCGA-55-8616-01 10 61005252 61005252 C G PHYHIPL Silent p.T344T 0.28 TCGA-55-8616-01 10 63964761 63964761 C A RTKN2 Missense_Mutation p.M347I 0.19 tolerated(0.8) benign(0.02) TCGA-55-8616-01 10 75675131 75675131 C A PLAU Missense_Mutation p.P365T 0.15 tolerated(0.15) possibly_damaging(0.891) TCGA-55-8616-01 10 7776970 7776970 C A ITIH2 Missense_Mutation p.L625M 0.23 tolerated(0.06) possibly_damaging(0.897) TCGA-55-8616-01 10 94834984 94834984 G A CYP26A1 Missense_Mutation p.E262K 0.31 tolerated(0.21) benign(0.183) TCGA-55-8616-01 10 98917589 98917589 C A SLIT1 Missense_Mutation p.Q133H 0.26 tolerated(0.09) possibly_damaging(0.764) TCGA-55-8616-01 11 102643670 102643670 C T MMP10 Silent p.L378L 0.22 TCGA-55-8616-01 11 102661117 102661117 G T MMP1 3'UTR 0.29 TCGA-55-8616-01 11 10821697 10821697 G A EIF4G2 Nonsense_Mutation p.R687* 0.10 TCGA-55-8616-01 11 110462719 110462719 A G ARHGAP20 Silent p.N375N 0.08 TCGA-55-8616-01 11 113286306 113286306 G T DRD2 Missense_Mutation p.P187Q 0.17 deleterious(0) probably_damaging(0.991) TCGA-55-8616-01 11 118948268 118948268 C G VPS11 Missense_Mutation p.Q494E 0.34 deleterious(0.01) probably_damaging(0.961) TCGA-55-8616-01 11 122774708 122774708 G T C11orf63 Missense_Mutation p.Q140H 0.22 tolerated(0.16) benign(0.024) TCGA-55-8616-01 11 123676815 123676815 G T OR6M1 Silent p.A81A 0.32 TCGA-55-8616-01 11 123676816 123676816 G T OR6M1 Missense_Mutation p.A81D 0.33 tolerated(0.07) benign(0.013) TCGA-55-8616-01 11 124180632 124180632 G T OR8D1 Missense_Mutation p.Q11K 0.15 deleterious(0.03) benign(0) TCGA-55-8616-01 11 124440900 124440900 A T OR8A1 Missense_Mutation p.E312D 0.43 tolerated(1) benign(0.011) TCGA-55-8616-01 11 134055245 134055245 C A NCAPD3 Missense_Mutation p.W741L 0.35 deleterious(0) possibly_damaging(0.505) TCGA-55-8616-01 11 134109948 134109948 A C VPS26B Silent p.V148V 0.19 TCGA-55-8616-01 11 1606406 1606406 C A KRTAP5-1 Missense_Mutation p.G25V 0.29 unknown(0) TCGA-55-8616-01 11 17794257 17794257 C T KCNC1 Intron 0.27 TCGA-55-8616-01 11 18363155 18363155 G T GTF2H1 Splice_Site p.X279_splice 0.28 TCGA-55-8616-01 11 2323333 2323333 C A TSPAN32 5'UTR 0.24 TCGA-55-8616-01 11 26619915 26619915 C T ANO3 Missense_Mutation p.T484I 0.17 deleterious(0.01) probably_damaging(0.969) TCGA-55-8616-01 11 27742963 27742963 G T RP11-587D21.4 Intron 0.22 TCGA-55-8616-01 11 281093 281093 C T NLRP6 Silent p.V453V 0.31 TCGA-55-8616-01 11 30974093 30974093 T A DCDC1 Missense_Mutation p.T872S 0.19 deleterious(0.03) benign(0.124) TCGA-55-8616-01 11 33565440 33565440 A T KIAA1549L Silent p.L480L 0.25 TCGA-55-8616-01 11 36657666 36657666 G T C11orf74 Missense_Mutation p.E119D 0.22 tolerated(0.08) benign(0.048) TCGA-55-8616-01 11 3690490 3690490 C A CHRNA10 Missense_Mutation p.G100C 0.34 deleterious(0) probably_damaging(0.998) TCGA-55-8616-01 11 46637808 46637808 C A HARBI1 5'UTR 0.34 TCGA-55-8616-01 11 4673771 4673771 C A OR51E1 Silent p.P5P 0.24 TCGA-55-8616-01 11 4703322 4703322 C A OR51E2 Missense_Mutation p.G207V 0.28 tolerated(0.05) probably_damaging(1) TCGA-55-8616-01 11 4968255 4968255 G A OR51A4 Missense_Mutation p.H26Y 0.09 tolerated(0.13) benign(0.077) TCGA-55-8616-01 11 5153417 5153417 G C OR52A5 Silent p.L152L 0.24 TCGA-55-8616-01 11 5344629 5344629 C A OR51B2 Missense_Mutation p.G300V 0.24 tolerated(0.26) benign(0.012) TCGA-55-8616-01 11 5410825 5410825 G T OR51M1 Missense_Mutation p.R66L 0.30 deleterious(0.01) benign(0.11) TCGA-55-8616-01 11 55038014 55038014 A T TRIM48 3'UTR 0.24 TCGA-55-8616-01 11 55655571 55655571 C A TRIM51 Missense_Mutation p.H191N 0.30 deleterious(0.03) benign(0.082) TCGA-55-8616-01 11 55658890 55658890 G A TRIM51 Missense_Mutation p.G381R 0.25 deleterious(0.03) possibly_damaging(0.836) TCGA-55-8616-01 11 55873257 55873257 G T OR8H2 Nonsense_Mutation p.G247* 0.19 TCGA-55-8616-01 11 56185685 56185685 A T OR5R1 Nonsense_Mutation p.Y8* 0.27 TCGA-55-8616-01 11 56237781 56237781 A T OR5M3 Missense_Mutation p.S65T 0.29 deleterious(0) probably_damaging(0.91) TCGA-55-8616-01 11 5687286 5687286 G T TRIM5 Missense_Mutation p.P265T 0.26 deleterious(0.01) possibly_damaging(0.701) TCGA-55-8616-01 11 59631429 59631429 G T TCN1 Silent p.T70T 0.16 TCGA-55-8616-01 11 59830042 59830042 C T MS4A3 Silent p.T86T 0.27 TCGA-55-8616-01 11 60070138 60070138 G C MS4A4A Missense_Mutation p.C165S 0.45 deleterious(0.04) possibly_damaging(0.824) TCGA-55-8616-01 11 60557889 60557889 C G MS4A10 Silent p.P27P 0.33 TCGA-55-8616-01 11 62678371 62678371 C T CHRM1 Missense_Mutation p.A68T 0.13 deleterious(0) probably_damaging(1) TCGA-55-8616-01 11 6588303 6588304 GG T DNHD1 Frame_Shift_Del p.W3855Ffs*7 0.29 TCGA-55-8616-01 11 6644047 6644047 C A DCHS1 Missense_Mutation p.A2954S 0.25 tolerated(0.06) benign(0.165) TCGA-55-8616-01 11 6898390 6898391 - C OR10A4 Frame_Shift_Ins p.N173Qfs*9 0.28 TCGA-55-8616-01 11 7064522 7064522 C A NLRP14 Missense_Mutation p.A422D 0.22 tolerated(0.27) benign(0.001) TCGA-55-8616-01 11 73021294 73021294 G T ARHGEF17 Missense_Mutation p.L537F 0.18 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-55-8616-01 11 73070989 73070989 C T ARHGEF17 Missense_Mutation p.P1400S 0.27 tolerated(0.14) possibly_damaging(0.497) TCGA-55-8616-01 11 7818088 7818088 T A OR5P2 Silent p.T134T 0.54 TCGA-55-8616-01 11 89424614 89424614 G A FOLH1B Splice_Site 0.15 TCGA-55-8616-01 11 92624210 92624210 C A FAT3 Missense_Mutation p.S4567R 0.29 possibly_damaging(0.7) TCGA-55-8616-01 12 103246599 103246599 G A PAH Missense_Mutation p.P279L 0.08 deleterious(0) probably_damaging(1) TCGA-55-8616-01 12 109577645 109577645 C A ACACB Silent p.G145G 0.17 TCGA-55-8616-01 12 109637279 109637280 - T ACACB Frame_Shift_Ins p.S901Ffs*17 0.34 TCGA-55-8616-01 12 111785638 111785638 G T CUX2 Missense_Mutation p.G1324C 0.13 deleterious_low_confidence(0) benign(0.03) TCGA-55-8616-01 12 111951265 111951265 C A ATXN2 Missense_Mutation p.S645I 0.29 possibly_damaging(0.449) TCGA-55-8616-01 12 114261014 114261014 C A RBM19 Intron 0.18 TCGA-55-8616-01 12 130898708 130898708 C A RIMBP2 Nonsense_Mutation p.E872* 0.15 TCGA-55-8616-01 12 14927315 14927315 G C H2AFJ 5'UTR 0.29 TCGA-55-8616-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.24 deleterious(0.04) probably_damaging(0.993) TCGA-55-8616-01 12 29650589 29650589 G T OVCH1 Missense_Mutation p.L11M 0.38 deleterious_low_confidence(0.05) unknown(0) TCGA-55-8616-01 12 32134792 32134792 G T KIAA1551 Missense_Mutation p.L301F 0.13 tolerated(0.15) benign(0.025) TCGA-55-8616-01 12 40020134 40020134 G T C12orf40 5'UTR 0.21 TCGA-55-8616-01 12 40704406 40704406 G T LRRK2 Missense_Mutation p.L1497F 0.27 deleterious(0.01) possibly_damaging(0.867) TCGA-55-8616-01 12 48378354 48378354 C A COL2A1 Missense_Mutation p.G621V 0.15 probably_damaging(0.964) TCGA-55-8616-01 12 4919144 4919144 C G KCNA6 5'UTR 0.36 TCGA-55-8616-01 12 50155486 50155486 G A TMBIM6 Splice_Site p.X263_splice 0.19 TCGA-55-8616-01 12 5021669 5021669 C A KCNA1 Nonsense_Mutation p.Y375* 0.21 TCGA-55-8616-01 12 51090849 51090849 G A DIP2B Missense_Mutation p.V647M 0.16 deleterious(0.04) possibly_damaging(0.884) TCGA-55-8616-01 12 53091498 53091498 G T KRT77 Missense_Mutation p.S242R 0.15 deleterious(0.01) possibly_damaging(0.868) TCGA-55-8616-01 12 57397533 57397533 T C ZBTB39 Missense_Mutation p.H390R 0.19 deleterious(0) probably_damaging(0.983) TCGA-55-8616-01 12 63042250 63042250 C A PPM1H 3'UTR 0.24 TCGA-55-8616-01 12 71977917 71977917 C A LGR5 Silent p.S709S 0.33 TCGA-55-8616-01 12 8212491 8212491 G T C3AR1 Silent p.L97L 0.13 TCGA-55-8616-01 12 85517849 85517849 G T LRRIQ1 Missense_Mutation p.D1187Y 0.29 tolerated(0.23) probably_damaging(0.935) TCGA-55-8616-01 12 85517973 85517973 C T LRRIQ1 Missense_Mutation p.S1228L 0.35 tolerated(0.22) benign(0.006) TCGA-55-8616-01 12 8693401 8693401 C T CLEC4E 5'UTR 0.15 TCGA-55-8616-01 12 9016585 9016585 G A A2ML1 Missense_Mutation p.G1233E 0.24 deleterious(0) probably_damaging(0.999) TCGA-55-8616-01 12 92538200 92538200 G C BTG1 Missense_Mutation p.P58A 0.15 deleterious(0) probably_damaging(1) TCGA-55-8616-01 13 103451135 103451135 C A KDELC1 5'UTR 0.33 TCGA-55-8616-01 13 103698396 103698396 G T SLC10A2 3'UTR 0.44 TCGA-55-8616-01 13 114784248 114784248 C A RASA3 Silent p.A311A 0.33 TCGA-55-8616-01 13 25266578 25266578 G A ATP12A Silent p.S366S 0.18 TCGA-55-8616-01 13 51918464 51918464 G T SERPINE3 Silent p.L111L 0.29 TCGA-55-8616-01 13 52971986 52971986 C T THSD1 Silent p.L134L 0.34 TCGA-55-8616-01 13 99368140 99368140 A C SLC15A1 Missense_Mutation p.C239G 0.15 deleterious(0) possibly_damaging(0.783) TCGA-55-8616-01 14 101350983 101350983 G T RTL1 Missense_Mutation p.A48D 0.27 tolerated_low_confidence(0.07) benign(0.015) TCGA-55-8616-01 14 102496174 102496174 G T DYNC1H1 Missense_Mutation p.D3221Y 0.26 possibly_damaging(0.793) TCGA-55-8616-01 14 106622114 106622114 G C IGHV3-16 Missense_Mutation p.S44C 0.28 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-55-8616-01 14 20344556 20344556 C T OR4K2 Missense_Mutation p.L44F 0.07 tolerated(0.12) benign(0.049) TCGA-55-8616-01 14 20869741 20869741 C A TEP1 Splice_Site p.X423_splice 0.25 TCGA-55-8616-01 14 24839701 24839701 G T NFATC4 Missense_Mutation p.G429V 0.34 tolerated(0.34) benign(0.098) TCGA-55-8616-01 14 42356713 42356713 G T LRFN5 Missense_Mutation p.E295D 0.30 tolerated(0.06) benign(0.013) TCGA-55-8616-01 14 45523633 45523633 G T FAM179B Splice_Site p.X1428_splice 0.19 TCGA-55-8616-01 14 52485784 52485784 G T NID2 Nonsense_Mutation p.S1008* 0.21 TCGA-55-8616-01 14 60620773 60620773 A G DHRS7 Silent p.N99N 0.10 TCGA-55-8616-01 14 62550985 62550985 T A SYT16 Silent p.S502S 0.30 TCGA-55-8616-01 14 66028412 66028412 C G FUT8 Missense_Mutation p.S44C 0.14 deleterious(0.01) possibly_damaging(0.639) TCGA-55-8616-01 14 68112498 68112498 C A ARG2 Silent p.L167L 0.23 TCGA-55-8616-01 14 77732604 77732604 C A NGB 3'UTR 0.20 TCGA-55-8616-01 14 79181272 79181272 C A NRXN3 Missense_Mutation p.R239S 0.20 deleterious(0) probably_damaging(0.959) TCGA-55-8616-01 14 81953873 81953873 C A SEL1L Missense_Mutation p.G498V 0.28 deleterious(0) probably_damaging(1) TCGA-55-8616-01 14 92909076 92909076 G A SLC24A4 Silent p.G166G 0.22 TCGA-55-8616-01 14 94722927 94722927 G T PPP4R4 Missense_Mutation p.A666S 0.27 tolerated(0.15) benign(0.057) TCGA-55-8616-01 14 94756847 94756847 C T SERPINA10 Silent p.S28S 0.32 TCGA-55-8616-01 14 94936123 94936123 A G SERPINA9 Missense_Mutation p.Y37H 0.31 tolerated(0.98) benign(0.001) TCGA-55-8616-01 14 95081103 95081103 G C SERPINA3 Missense_Mutation p.E109Q 0.12 deleterious(0.01) benign(0.31) TCGA-55-8616-01 14 95234895 95234895 G A GSC Missense_Mutation p.S236L 0.14 tolerated_low_confidence(0.17) benign(0.32) TCGA-55-8616-01 14 96180319 96180319 C A TCL1A Nonsense_Mutation p.E29* 0.04 TCGA-55-8616-01 15 23811835 23811835 T G MKRN3 Silent p.A302A 0.27 TCGA-55-8616-01 15 23890799 23890799 G T MAGEL2 Silent p.P94P 0.50 TCGA-55-8616-01 15 25223399 25223399 C A SNRPN Missense_Mutation p.P207T 0.16 tolerated(0.13) unknown(0) TCGA-55-8616-01 15 28361852 28361852 G A HERC2 Missense_Mutation p.A4523V 0.15 possibly_damaging(0.674) TCGA-55-8616-01 15 29346381 29346381 C A APBA2 Silent p.T98T 0.27 TCGA-55-8616-01 15 30000947 30000947 C A TJP1 Nonsense_Mutation p.E1556* 0.13 TCGA-55-8616-01 15 42148685 42148685 C A SPTBN5 Missense_Mutation p.V2974L 0.18 benign(0.05) TCGA-55-8616-01 15 42371832 42371832 C T PLA2G4D Missense_Mutation p.S407N 0.26 tolerated(0.17) benign(0.016) TCGA-55-8616-01 15 43498809 43498809 T A EPB42 Missense_Mutation p.E476V 0.30 deleterious(0.03) benign(0.328) TCGA-55-8616-01 15 63031603 63031603 A T TLN2 Silent p.A1248A 0.34 TCGA-55-8616-01 15 63915014 63915014 C A HERC1 Missense_Mutation p.R4563M 0.33 probably_damaging(0.999) TCGA-55-8616-01 15 65360080 65360080 C A RASL12 Missense_Mutation p.G32C 0.36 deleterious(0) probably_damaging(0.998) TCGA-55-8616-01 15 71535123 71535123 G C THSD4 Missense_Mutation p.R200S 0.06 tolerated(0.37) benign(0.005) TCGA-55-8616-01 15 74177204 74177204 C A TBC1D21 Silent p.L150L 0.10 TCGA-55-8616-01 15 75309074 75309074 A G SCAMP5 Missense_Mutation p.I93V 0.10 tolerated(0.74) benign(0.04) TCGA-55-8616-01 15 78790420 78790420 G T IREB2 Missense_Mutation p.D943Y 0.12 deleterious(0) possibly_damaging(0.77) TCGA-55-8616-01 15 79059232 79059232 G A ADAMTS7 Silent p.G1007G 0.17 TCGA-55-8616-01 15 83926257 83926257 G T BNC1 Missense_Mutation p.N974K 0.26 deleterious(0) probably_damaging(0.998) TCGA-55-8616-01 15 83926618 83926618 G T BNC1 Missense_Mutation p.T854N 0.26 deleterious(0) possibly_damaging(0.572) TCGA-55-8616-01 15 89744102 89744102 T C ABHD2 3'UTR 0.15 TCGA-55-8616-01 15 90210245 90210245 C A PLIN1 Missense_Mutation p.K377N 0.10 tolerated(0.07) probably_damaging(0.989) TCGA-55-8616-01 16 10032409 10032409 C A GRIN2A Splice_Site p.X139_splice 0.27 TCGA-55-8616-01 16 17232302 17232302 C G XYLT1 Missense_Mutation p.K558N 0.10 deleterious(0.03) probably_damaging(0.969) TCGA-55-8616-01 16 20360470 20360470 G T UMOD Silent p.T51T 0.16 TCGA-55-8616-01 16 2160517 2160517 G C PKD1 Missense_Mutation p.L1551V 0.19 possibly_damaging(0.831) TCGA-55-8616-01 16 2230047 2230047 C T CASKIN1 Missense_Mutation p.A1108T 0.29 benign(0.005) TCGA-55-8616-01 16 2580777 2580777 G A CEMP1 Silent p.L100L 0.22 TCGA-55-8616-01 16 3274310 3274310 C A ZNF200 Missense_Mutation p.C257F 0.40 deleterious(0) probably_damaging(0.999) TCGA-55-8616-01 16 3807317 3807317 C A CREBBP Missense_Mutation p.D1224Y 0.26 unknown(0) TCGA-55-8616-01 16 461459 461459 A G DECR2 Missense_Mutation p.S254G 0.26 deleterious(0) probably_damaging(0.997) TCGA-55-8616-01 16 48201133 48201133 T A ABCC11 3'UTR 0.28 TCGA-55-8616-01 16 49671888 49671888 C A ZNF423 Missense_Mutation p.R392L 0.11 deleterious(0.03) benign(0.124) TCGA-55-8616-01 16 50354603 50354603 C T BRD7 Missense_Mutation p.G529D 0.08 tolerated(0.15) probably_damaging(0.998) TCGA-55-8616-01 16 56599070 56599070 T A MT4 Silent p.S10S 0.29 TCGA-55-8616-01 16 56673786 56673786 G T MT1A Missense_Mutation p.C37F 0.28 tolerated(0.05) probably_damaging(0.989) TCGA-55-8616-01 16 56899334 56899334 G T SLC12A3 Missense_Mutation p.V63L 0.15 tolerated(0.17) benign(0.003) TCGA-55-8616-01 16 62055393 62055393 G T CDH8 5'UTR 0.29 TCGA-55-8616-01 16 67318776 67318776 C G PLEKHG4 Nonsense_Mutation p.S618* 0.10 TCGA-55-8616-01 16 67472494 67472494 C A ATP6V0D1 Missense_Mutation p.W331C 0.27 deleterious(0) probably_damaging(1) TCGA-55-8616-01 16 69148368 69148368 G A HAS3 Silent p.L287L 0.18 TCGA-55-8616-01 16 72991883 72991883 C A ZFHX3 Missense_Mutation p.C721F 0.18 probably_damaging(0.991) TCGA-55-8616-01 16 75512650 75512650 C A CHST6 Silent p.R359R 0.22 TCGA-55-8616-01 16 86613399 86613399 C A FOXL1 3'UTR 0.09 TCGA-55-8616-01 16 86613400 86613400 A G FOXL1 3'UTR 0.09 TCGA-55-8616-01 16 88689695 88689695 A G ZC3H18 Missense_Mutation p.Y579C 0.18 deleterious_low_confidence(0) unknown(0) TCGA-55-8616-01 17 17720655 17720655 C A SREBF1 Silent p.L537L 0.40 TCGA-55-8616-01 17 17720656 17720656 A G SREBF1 Missense_Mutation p.L537P 0.40 deleterious(0) probably_damaging(0.967) TCGA-55-8616-01 17 33504107 33504107 C A UNC45B Silent p.I701I 0.59 TCGA-55-8616-01 17 34340926 34340926 G T CCL23 Missense_Mutation p.P54T 0.08 deleterious(0.02) benign(0.322) TCGA-55-8616-01 17 36483463 36483463 C T GPR179 Missense_Mutation p.V1997M 0.46 tolerated(0.05) benign(0.146) TCGA-55-8616-01 17 3844419 3844419 G A ATP2A3 Missense_Mutation p.A649V 0.10 tolerated(0.12) benign(0) TCGA-55-8616-01 17 40255781 40255781 C A DHX58 Silent p.R533R 0.43 TCGA-55-8616-01 17 40839855 40839855 C A CNTNAP1 Missense_Mutation p.R388S 0.13 tolerated(0.35) benign(0.057) TCGA-55-8616-01 17 42745519 42745519 G A C17orf104 Missense_Mutation p.R747H 0.10 tolerated(0.07) benign(0.006) TCGA-55-8616-01 17 42786721 42786721 G T DBF4B Silent p.R23R 0.11 TCGA-55-8616-01 17 42851922 42851922 G T ADAM11 Missense_Mutation p.M380I 0.40 tolerated(1) possibly_damaging(0.679) TCGA-55-8616-01 17 47039174 47039174 G T GIP Missense_Mutation p.H89N 0.40 tolerated(0.06) probably_damaging(0.993) TCGA-55-8616-01 17 59924471 59924471 C T BRIP1 Silent p.S206S 0.10 TCGA-55-8616-01 17 60345525 60345525 G T TBC1D3P2 RNA 0.06 TCGA-55-8616-01 17 60483881 60483881 T C EFCAB3 Silent p.L229L 0.69 TCGA-55-8616-01 17 61619715 61619715 C G KCNH6 Missense_Mutation p.L690V 0.07 deleterious(0.02) probably_damaging(0.951) TCGA-55-8616-01 17 72838517 72838517 A G GRIN2C 3'UTR 0.58 TCGA-55-8616-01 17 7578500 7578500 G A TP53 Nonsense_Mutation p.Q144* 0.51 TCGA-55-8616-01 17 76210855 76210855 C T BIRC5 Missense_Mutation p.P69L 0.12 deleterious(0) probably_damaging(0.967) TCGA-55-8616-01 17 7803999 7803999 G T CHD3 Missense_Mutation p.M1035I 0.41 benign(0.072) TCGA-55-8616-01 17 78061505 78061505 A T CCDC40 Missense_Mutation p.N850I 0.64 deleterious(0) probably_damaging(0.943) TCGA-55-8616-01 17 8141533 8141533 C A CTC1 Missense_Mutation p.G155C 0.53 deleterious(0.01) probably_damaging(0.999) TCGA-55-8616-01 17 9765354 9765354 G T GLP2R Missense_Mutation p.G335W 0.45 deleterious(0.02) possibly_damaging(0.866) TCGA-55-8616-01 18 10487978 10487978 G T APCDD1 Silent p.L496L 0.31 TCGA-55-8616-01 18 28576871 28576871 C A DSC3 Silent p.R793R 0.19 TCGA-55-8616-01 18 29454466 29454466 T A TRAPPC8 Nonsense_Mutation p.R644* 0.21 TCGA-55-8616-01 18 31324664 31324664 G A ASXL3 Missense_Mutation p.G1618R 0.47 possibly_damaging(0.55) TCGA-55-8616-01 18 34855156 34855156 C A CELF4 Missense_Mutation p.D167Y 0.32 deleterious(0) probably_damaging(1) TCGA-55-8616-01 18 40854131 40854131 G T SYT4 Missense_Mutation p.P88Q 0.10 tolerated(0.53) possibly_damaging(0.534) TCGA-55-8616-01 18 45555813 45555813 C A ZBTB7C Missense_Mutation p.G560W 0.32 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-55-8616-01 18 50985661 50985661 C A DCC Missense_Mutation p.P1151H 0.07 deleterious(0) probably_damaging(1) TCGA-55-8616-01 18 5406957 5406957 T A EPB41L3 Missense_Mutation p.K723I 0.27 deleterious(0) probably_damaging(0.984) TCGA-55-8616-01 18 67753922 67753922 T G RTTN Splice_Site p.X1435_splice 0.12 TCGA-55-8616-01 18 70417525 70417525 G T NETO1 Missense_Mutation p.S438Y 0.36 deleterious(0) possibly_damaging(0.564) TCGA-55-8616-01 19 12090597 12090597 G T ZNF763 3'UTR 0.35 TCGA-55-8616-01 19 17743613 17743613 C A UNC13A Missense_Mutation p.D1136Y 0.25 deleterious(0.01) benign(0.332) TCGA-55-8616-01 19 19377420 19377420 T C TM6SF2 Splice_Site p.X269_splice 0.28 TCGA-55-8616-01 19 19746349 19746349 C A GMIP Missense_Mutation p.G479C 0.28 deleterious(0.04) benign(0.04) TCGA-55-8616-01 19 21476519 21476519 T C ZNF708 Missense_Mutation p.K417E 0.08 tolerated(1) benign(0) TCGA-55-8616-01 19 22270955 22270955 C A ZNF257 Missense_Mutation p.Q135K 0.25 tolerated(0.09) benign(0.022) TCGA-55-8616-01 19 23316946 23316946 C A ZNF730 Missense_Mutation p.T23N 0.26 deleterious(0.03) possibly_damaging(0.765) TCGA-55-8616-01 19 30935750 30935750 C A ZNF536 Nonsense_Mutation p.Y427* 0.29 TCGA-55-8616-01 19 31039809 31039809 G A ZNF536 Missense_Mutation p.A1095T 0.41 tolerated_low_confidence(0.47) benign(0) TCGA-55-8616-01 19 36332676 36332676 G A NPHS1 Missense_Mutation p.T919I 0.11 deleterious(0.02) probably_damaging(0.945) TCGA-55-8616-01 19 38959649 38959649 G A RYR1 Nonsense_Mutation p.W1142* 0.21 TCGA-55-8616-01 19 39123090 39123090 G T EIF3K Missense_Mutation p.M125I 0.12 tolerated(0.23) benign(0) TCGA-55-8616-01 19 39669179 39669179 C A PAK4 Missense_Mutation p.A579D 0.27 tolerated(0.05) benign(0.016) TCGA-55-8616-01 19 40433204 40433204 C T FCGBP Silent p.E355E 0.17 TCGA-55-8616-01 19 48183814 48183814 C T GLTSCR1 Nonsense_Mutation p.Q463* 0.19 TCGA-55-8616-01 19 51379961 51379961 C G KLK2 Missense_Mutation p.A147G 0.24 tolerated(0.17) benign(0.056) TCGA-55-8616-01 19 51857475 51857475 C A ETFB Missense_Mutation p.A140S 0.22 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-55-8616-01 19 51919276 51919276 G T SIGLEC10 Silent p.P300P 0.23 TCGA-55-8616-01 19 51955752 51955752 G A SIGLEC8 Nonsense_Mutation p.Q461* 0.24 TCGA-55-8616-01 19 52023231 52023231 T C SIGLEC6 3'UTR 0.38 TCGA-55-8616-01 19 52146638 52146638 G C SIGLEC14 Silent p.P387P 0.27 TCGA-55-8616-01 19 52220305 52220305 T A HAS1 Missense_Mutation p.S282C 0.22 deleterious(0.02) possibly_damaging(0.901) TCGA-55-8616-01 19 52376751 52376751 C G ZNF577 Silent p.G164G 0.26 TCGA-55-8616-01 19 53345090 53345090 T A ZNF468 Missense_Mutation p.I153L 0.19 tolerated(0.52) benign(0) TCGA-55-8616-01 19 53762205 53762205 C T VN1R2 Missense_Mutation p.P193S 0.21 deleterious(0.04) probably_damaging(0.945) TCGA-55-8616-01 19 54754933 54754933 C A LILRB5 Intron 0.21 TCGA-55-8616-01 19 54799989 54799989 G T LILRA3 3'UTR 0.41 TCGA-55-8616-01 19 55672720 55672720 C T DNAAF3 Missense_Mutation p.D312N 0.12 deleterious(0) probably_damaging(0.994) TCGA-55-8616-01 19 55697896 55697896 C A PTPRH Missense_Mutation p.R860L 0.25 possibly_damaging(0.906) TCGA-55-8616-01 19 56244424 56244424 C A NLRP9 Missense_Mutation p.S258I 0.17 deleterious(0) probably_damaging(0.95) TCGA-55-8616-01 19 56321541 56321542 - T NLRP11 Frame_Shift_Ins p.N145Kfs*30 0.33 TCGA-55-8616-01 19 57175956 57175956 G A ZNF835 Missense_Mutation p.T204M 0.26 deleterious(0.01) benign(0.035) TCGA-55-8616-01 19 57335705 57335705 G C PEG3 Missense_Mutation p.R107G 0.22 tolerated(0.2) benign(0.095) TCGA-55-8616-01 19 5772927 5772927 G T CATSPERD Missense_Mutation p.W631L 0.09 deleterious(0) probably_damaging(0.946) TCGA-55-8616-01 19 5772928 5772928 G T CATSPERD Missense_Mutation p.W631C 0.09 deleterious(0) probably_damaging(0.986) TCGA-55-8616-01 19 58050077 58050077 C T ZNF549 Missense_Mutation p.R569C 0.22 deleterious(0.04) benign(0.036) TCGA-55-8616-01 19 58485798 58485798 C A C19orf18 Translation_Start_Site p.M1? 0.17 deleterious(0) benign(0.216) TCGA-55-8616-01 19 58596175 58596175 C T ZSCAN18 Silent p.A526A 0.30 TCGA-55-8616-01 19 8971695 8971695 C A MUC16 Missense_Mutation p.L14299F 0.28 probably_damaging(0.979) TCGA-55-8616-01 19 9011480 9011480 C A MUC16 Missense_Mutation p.G12918V 0.34 probably_damaging(0.999) TCGA-55-8616-01 19 9067747 9067747 C A MUC16 Missense_Mutation p.G6567C 0.20 unknown(0) TCGA-55-8616-01 19 9076660 9076660 C A MUC16 Missense_Mutation p.D3596Y 0.17 unknown(0) TCGA-55-8616-01 19 9362622 9362622 C A OR7E24 Silent p.P301P 0.36 TCGA-55-8616-01 19 9577240 9577240 G T ZNF560 3'UTR 0.21 TCGA-55-8616-01 1 103363697 103363697 C A COL11A1 Missense_Mutation p.G1429V 0.61 unknown(0) TCGA-55-8616-01 1 103363698 103363698 C T COL11A1 Missense_Mutation p.G1429R 0.61 unknown(0) TCGA-55-8616-01 1 109439704 109439704 C A GPSM2 Missense_Mutation p.A92E 0.33 deleterious(0) probably_damaging(0.924) TCGA-55-8616-01 1 109643148 109643148 G T TMEM167B 3'Flank 0.52 TCGA-55-8616-01 1 11087189 11087189 G A MASP2 Missense_Mutation p.P605L 0.43 tolerated(0.38) benign(0) TCGA-55-8616-01 1 148932835 148932835 C T RP11-14N7.2 RNA 0.20 TCGA-55-8616-01 1 151280219 151280219 C A PI4KB Missense_Mutation p.R350L 0.57 tolerated(0.12) benign(0.274) TCGA-55-8616-01 1 152276851 152276851 G A FLG Missense_Mutation p.S3504L 0.09 unknown(0) TCGA-55-8616-01 1 157485266 157485266 G C FCRL5 3'UTR 0.56 TCGA-55-8616-01 1 161026302 161026302 C T ARHGAP30 Missense_Mutation p.R74Q 0.16 tolerated(0.14) benign(0.208) TCGA-55-8616-01 1 162688892 162688892 G T DDR2 Silent p.L13L 0.47 TCGA-55-8616-01 1 165376092 165376092 G A RXRG Missense_Mutation p.L401F 0.59 deleterious(0.01) probably_damaging(0.998) TCGA-55-8616-01 1 167757140 167757140 G T MPZL1 Silent p.A264A 0.65 TCGA-55-8616-01 1 168059860 168059860 C A GPR161 Missense_Mutation p.Q402H 0.67 tolerated(0.38) benign(0.019) TCGA-55-8616-01 1 169565170 169565170 T A SELP Silent p.A698A 0.61 TCGA-55-8616-01 1 175372559 175372559 G A TNR Silent p.S231S 0.13 TCGA-55-8616-01 1 17593261 17593261 G T PADI3 Silent p.V152V 0.37 TCGA-55-8616-01 1 181732609 181732609 T A CACNA1E Missense_Mutation p.L1586H 0.70 deleterious(0) probably_damaging(0.963) TCGA-55-8616-01 1 192335169 192335169 C A RGS21 Missense_Mutation p.P125H 0.70 deleterious(0.01) probably_damaging(1) TCGA-55-8616-01 1 197168774 197168774 G C ZBTB41 Nonsense_Mutation p.S277* 0.07 TCGA-55-8616-01 1 202283938 202283938 G T LGR6 Missense_Mutation p.D526Y 0.50 deleterious(0.02) benign(0.045) TCGA-55-8616-01 1 205312586 205312586 G C KLHDC8A Missense_Mutation p.F49L 0.58 tolerated(0.78) benign(0.028) TCGA-55-8616-01 1 207697100 207697100 C A CR1 Missense_Mutation p.P211H 0.32 deleterious(0.04) possibly_damaging(0.879) TCGA-55-8616-01 1 207697101 207697101 C A CR1 Silent p.P211P 0.31 TCGA-55-8616-01 1 210977316 210977316 G T KCNH1 Missense_Mutation p.T552K 0.60 deleterious(0) possibly_damaging(0.635) TCGA-55-8616-01 1 220835211 220835211 G T MARK1 Silent p.P697P 0.14 TCGA-55-8616-01 1 237955570 237955570 A G RYR2 Missense_Mutation p.I4577V 0.56 benign(0) TCGA-55-8616-01 1 243354504 243354504 C A CEP170 Missense_Mutation p.K308N 0.35 tolerated(0.14) possibly_damaging(0.675) TCGA-55-8616-01 1 24408983 24408983 A T MYOM3 Intron 0.83 TCGA-55-8616-01 1 247582251 247582251 T C NLRP3 Missense_Mutation p.V52A 0.73 deleterious(0.01) possibly_damaging(0.577) TCGA-55-8616-01 1 247614601 247614601 T A OR2B11 Silent p.A228A 0.59 TCGA-55-8616-01 1 26385006 26385006 C A TRIM63 Nonsense_Mutation p.E236* 0.52 TCGA-55-8616-01 1 26688304 26688304 C A ZNF683 Missense_Mutation p.W451C 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-8616-01 1 26694176 26694176 C A ZNF683 Missense_Mutation p.C76F 0.52 deleterious(0.04) benign(0.275) TCGA-55-8616-01 1 28785595 28785595 G A PHACTR4 Splice_Site p.X16_splice 0.49 TCGA-55-8616-01 1 4832342 4832342 G T AJAP1 Missense_Mutation p.C307F 0.25 deleterious(0) possibly_damaging(0.506) TCGA-55-8616-01 1 6589213 6589213 C T NOL9 Missense_Mutation p.A556T 0.50 deleterious(0.04) probably_damaging(1) TCGA-55-8616-01 1 74957883 74957883 G T TNNI3K Missense_Mutation p.A863S 0.65 deleterious_low_confidence(0.01) possibly_damaging(0.535) TCGA-55-8616-01 1 75037198 75037198 G T C1orf173 Missense_Mutation p.A1399D 0.56 deleterious(0.04) benign(0.039) TCGA-55-8616-01 1 92459768 92459768 G T BRDT Missense_Mutation p.Q748H 0.47 tolerated(0.45) benign(0.003) TCGA-55-8616-01 1 99767377 99767377 G T LPPR4 Missense_Mutation p.R297L 0.34 deleterious(0) probably_damaging(0.976) TCGA-55-8616-01 20 1517898 1517898 G T SIRPD Missense_Mutation p.H160Q 0.26 tolerated(0.3) possibly_damaging(0.589) TCGA-55-8616-01 20 2411247 2411247 G T TGM6 Splice_Site p.X611_splice 0.46 TCGA-55-8616-01 20 2775007 2775007 G T CPXM1 Nonsense_Mutation p.Y678* 0.32 TCGA-55-8616-01 20 30358225 30358225 G C TPX2 Missense_Mutation p.A146P 0.25 tolerated(0.09) benign(0.002) TCGA-55-8616-01 20 31830340 31830340 C T BPIFA1 3'UTR 0.15 TCGA-55-8616-01 20 37518309 37518309 G T PPP1R16B Splice_Site p.X107_splice 0.22 TCGA-55-8616-01 20 43384983 43384983 C A RIMS4 Missense_Mutation p.W202L 0.21 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-55-8616-01 20 45133315 45133315 G - ZNF334 Frame_Shift_Del p.P29Lfs*10 0.27 TCGA-55-8616-01 20 49621045 49621045 C T KCNG1 Missense_Mutation p.R358H 0.23 deleterious(0) probably_damaging(1) TCGA-55-8616-01 20 57766653 57766653 G T ZNF831 Silent p.T193T 0.29 TCGA-55-8616-01 20 57768476 57768476 G A ZNF831 Nonsense_Mutation p.W801* 0.15 TCGA-55-8616-01 20 57769378 57769378 G T ZNF831 Nonsense_Mutation p.E1102* 0.21 TCGA-55-8616-01 20 57899404 57899404 C A EDN3 Missense_Mutation p.Q203K 0.25 tolerated_low_confidence(0.62) benign(0.034) TCGA-55-8616-01 20 60715919 60715919 G A PSMA7 Missense_Mutation p.R60W 0.04 deleterious(0) probably_damaging(0.983) TCGA-55-8616-01 20 61943048 61943048 G T COL20A1 Missense_Mutation p.Q537H 0.22 tolerated(0.15) probably_damaging(0.913) TCGA-55-8616-01 20 62493648 62493648 C T ABHD16B Missense_Mutation p.T252M 0.23 deleterious(0) probably_damaging(0.965) TCGA-55-8616-01 20 62839584 62839584 G T MYT1 Missense_Mutation p.E345D 0.23 possibly_damaging(0.787) TCGA-55-8616-01 20 8626804 8626804 C T PLCB1 Missense_Mutation p.S147F 0.55 deleterious(0) possibly_damaging(0.65) TCGA-55-8616-01 21 10862818 10862818 G T IGHV1OR21-1 Missense_Mutation p.K38N 0.07 deleterious(0.02) possibly_damaging(0.468) TCGA-55-8616-01 21 10998209 10998209 G T TPTE Intron 0.08 TCGA-55-8616-01 21 31654565 31654565 C G KRTAP24-1 Missense_Mutation p.R229T 0.56 deleterious(0.02) possibly_damaging(0.587) TCGA-55-8616-01 21 31798084 31798084 A T KRTAP13-3 Silent p.G49G 0.55 TCGA-55-8616-01 21 46228940 46228940 C G SUMO3 Intron 0.45 TCGA-55-8616-01 21 46697180 46697180 C T POFUT2 Intron 0.25 TCGA-55-8616-01 22 16449075 16449075 G T OR11H1 Missense_Mutation p.P244T 0.21 deleterious(0) probably_damaging(0.956) TCGA-55-8616-01 22 17472966 17472966 C G GAB4 Missense_Mutation p.R92P 0.25 deleterious(0) benign(0.35) TCGA-55-8616-01 22 18301212 18301212 C A MICAL3 Silent p.R1405R 0.29 TCGA-55-8616-01 22 20094161 20094161 G T DGCR8 Missense_Mutation p.G646W 0.26 tolerated(0.08) probably_damaging(0.997) TCGA-55-8616-01 22 20937129 20937129 C G MED15 Missense_Mutation p.S471C 0.06 deleterious(0.03) unknown(0) TCGA-55-8616-01 22 26173681 26173681 C A MYO18B Silent p.T667T 0.23 TCGA-55-8616-01 22 30951880 30951880 C A GAL3ST1 Missense_Mutation p.G111V 0.22 deleterious(0) probably_damaging(0.991) TCGA-55-8616-01 22 41911488 41911488 C T ACO2 Silent p.A211A 0.12 TCGA-55-8616-01 22 51043396 51043396 G T MAPK8IP2 Missense_Mutation p.G556C 0.20 tolerated(0.06) possibly_damaging(0.79) TCGA-55-8616-01 2 10206045 10206045 G T CYS1 Missense_Mutation p.S119R 0.18 tolerated(0.06) possibly_damaging(0.654) TCGA-55-8616-01 2 107460279 107460279 A T ST6GAL2 Missense_Mutation p.L52Q 0.38 possibly_damaging(0.703) TCGA-55-8616-01 2 109382039 109382039 G T RANBP2 Missense_Mutation p.A1682S 0.30 tolerated(0.4) benign(0.076) TCGA-55-8616-01 2 122125400 122125400 C A CLASP1 Missense_Mutation p.R1217L 0.24 tolerated(0.15) benign(0.177) TCGA-55-8616-01 2 125547603 125547603 C A CNTNAP5 Silent p.G958G 0.32 TCGA-55-8616-01 2 125555735 125555735 G T CNTNAP5 Missense_Mutation p.V1018L 0.26 tolerated(1) benign(0.259) TCGA-55-8616-01 2 125627318 125627318 C A CNTNAP5 Missense_Mutation p.L1138I 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-55-8616-01 2 141135760 141135760 C A LRP1B Missense_Mutation p.G3543C 0.34 probably_damaging(0.991) TCGA-55-8616-01 2 141264397 141264397 C A LRP1B Missense_Mutation p.C2830F 0.24 possibly_damaging(0.639) TCGA-55-8616-01 2 145156186 145156186 T A ZEB2 Silent p.S856S 0.30 TCGA-55-8616-01 2 1507783 1507783 C A TPO Missense_Mutation p.T817N 0.38 deleterious(0.03) probably_damaging(0.934) TCGA-55-8616-01 2 152507221 152507221 C A NEB Missense_Mutation p.G2365V 0.23 probably_damaging(0.997) TCGA-55-8616-01 2 171070900 171070900 G T MYO3B Silent p.G111G 0.24 TCGA-55-8616-01 2 172666765 172666765 C A SLC25A12 Missense_Mutation p.G398V 0.22 deleterious(0) possibly_damaging(0.58) TCGA-55-8616-01 2 172666766 172666766 C A SLC25A12 Missense_Mutation p.G398W 0.23 deleterious(0) probably_damaging(0.999) TCGA-55-8616-01 2 179594215 179594215 G T TTN Missense_Mutation p.T6223K 0.21 TCGA-55-8616-01 2 179610878 179610878 A G TTN Intron 0.30 TCGA-55-8616-01 2 187370495 187370495 G A ZC3H15 Missense_Mutation p.R298H 0.26 tolerated(0.17) benign(0.004) TCGA-55-8616-01 2 198950568 198950568 C A PLCL1 Missense_Mutation p.P776H 0.24 deleterious(0) probably_damaging(1) TCGA-55-8616-01 2 210640689 210640689 C A UNC80 Missense_Mutation p.S73Y 0.28 probably_damaging(0.965) TCGA-55-8616-01 2 211542620 211542620 C - CPS1 Frame_Shift_Del p.L1478Ffs*48 0.28 TCGA-55-8616-01 2 215632326 215632326 T C BARD1 Missense_Mutation p.H483R 0.23 tolerated(0.18) benign(0.419) TCGA-55-8616-01 2 216964834 216964834 G A TMEM169 Missense_Mutation p.D155N 0.29 tolerated(0.46) possibly_damaging(0.466) TCGA-55-8616-01 2 220101768 220101768 A G GLB1L 3'UTR 0.11 TCGA-55-8616-01 2 220313113 220313113 G C SPEG Silent p.R411R 0.33 TCGA-55-8616-01 2 228882412 228882412 G A SPHKAP Missense_Mutation p.S1053F 0.30 deleterious(0) probably_damaging(0.928) TCGA-55-8616-01 2 228882838 228882838 G T SPHKAP Missense_Mutation p.P911H 0.14 deleterious(0) probably_damaging(1) TCGA-55-8616-01 2 233925318 233925318 G A INPP5D Missense_Mutation p.V44M 0.10 deleterious(0.01) probably_damaging(0.946) TCGA-55-8616-01 2 240969736 240969736 A T OR6B2 Missense_Mutation p.F37L 0.16 tolerated(1) benign(0.002) TCGA-55-8616-01 2 241534569 241534569 G T CAPN10 Nonsense_Mutation p.E376* 0.26 TCGA-55-8616-01 2 242794898 242794898 C A PDCD1 Missense_Mutation p.R104L 0.24 tolerated(0.63) benign(0.217) TCGA-55-8616-01 2 27164859 27164859 C T DPYSL5 Silent p.T377T 0.38 TCGA-55-8616-01 2 31805787 31805787 C T SRD5A2 RNA 0.54 TCGA-55-8616-01 2 33586576 33586576 T A LTBP1 Missense_Mutation p.Y1422N 0.30 deleterious(0.01) benign(0.265) TCGA-55-8616-01 2 3623451 3623451 C G RPS7 Silent p.L40L 0.25 TCGA-55-8616-01 2 42991092 42991092 C A OXER1 Silent p.G76G 0.35 TCGA-55-8616-01 2 44047179 44047179 G T ABCG5 Silent p.A508A 0.31 TCGA-55-8616-01 2 47250580 47250580 G T TTC7A Missense_Mutation p.R515L 0.25 deleterious(0.02) benign(0.317) TCGA-55-8616-01 2 53956659 53956659 C A ASB3 Missense_Mutation p.G170V 0.27 deleterious(0) probably_damaging(0.998) TCGA-55-8616-01 2 69049812 69049812 G A ARHGAP25 Missense_Mutation p.G514E 0.19 tolerated(0.3) benign(0.009) TCGA-55-8616-01 2 71062729 71062729 G T CD207 Missense_Mutation p.P28H 0.25 deleterious(0) probably_damaging(0.982) TCGA-55-8616-01 2 73151449 73151449 C A EMX1 Missense_Mutation p.P178T 0.40 tolerated(0.09) benign(0.033) TCGA-55-8616-01 2 74273672 74273672 G T TET3 Missense_Mutation p.V75L 0.16 tolerated(0.66) benign(0.021) TCGA-55-8616-01 2 79971582 79971582 C A CTNNA2 Missense_Mutation p.H58N 0.33 tolerated(0.29) benign(0.173) TCGA-55-8616-01 2 80816455 80816455 G C CTNNA2 Missense_Mutation p.E678D 0.26 tolerated(0.07) possibly_damaging(0.495) TCGA-55-8616-01 2 85893858 85893877 ATCGTGTCCTGGGAGGCCAG - SFTPB Splice_Site p.X102_splice 0.10 TCGA-55-8616-01 2 89459320 89459320 G T IGKV6-21 Missense_Mutation p.S86Y 0.21 tolerated(0.06) possibly_damaging(0.886) TCGA-55-8616-01 3 121341054 121341054 G T FBXO40 Nonsense_Mutation p.G260* 0.29 TCGA-55-8616-01 3 124449248 124449248 C T UMPS 5'UTR 0.46 TCGA-55-8616-01 3 130095133 130095133 C A COL6A5 Missense_Mutation p.L41M 0.34 tolerated(0.08) possibly_damaging(0.893) TCGA-55-8616-01 3 135742006 135742006 G A PPP2R3A Intron 0.14 TCGA-55-8616-01 3 172165529 172165529 G T GHSR Silent p.V225V 0.37 TCGA-55-8616-01 3 186272222 186272222 T G TBCCD1 Silent p.T455T 0.51 TCGA-55-8616-01 3 194947518 194947518 T A XXYLT1 Missense_Mutation p.H191L 0.34 tolerated(0.21) benign(0.012) TCGA-55-8616-01 3 196288032 196288032 C A WDR53 Silent p.T105T 0.30 TCGA-55-8616-01 3 33134910 33134910 C A TMPPE Missense_Mutation p.A260S 0.32 tolerated(0.07) benign(0.06) TCGA-55-8616-01 3 36780004 36780004 T C DCLK3 Silent p.K49K 0.37 TCGA-55-8616-01 3 38565410 38565410 G T EXOG Missense_Mutation p.V222L 0.36 deleterious(0) probably_damaging(0.984) TCGA-55-8616-01 3 396429 396429 G T CHL1 Missense_Mutation p.W380C 0.15 deleterious(0) probably_damaging(1) TCGA-55-8616-01 3 44598638 44598638 C T ZKSCAN7 Silent p.N33N 0.12 TCGA-55-8616-01 3 44700238 44700238 T C ZNF35 Missense_Mutation p.I128T 0.33 tolerated(0.11) benign(0.001) TCGA-55-8616-01 3 52005522 52005522 G A ABHD14B Silent p.H55H 0.32 TCGA-55-8616-01 3 63600940 63600940 T A SYNPR Missense_Mutation p.I214K 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-55-8616-01 3 66431236 66431236 A G LRIG1 Silent p.C940C 0.31 TCGA-55-8616-01 3 9101984 9101985 - A SRGAP3 Frame_Shift_Ins p.L244Ffs*18 0.35 TCGA-55-8616-01 4 110864571 110864571 A T EGF Silent p.V163V 0.32 TCGA-55-8616-01 4 114276327 114276327 G T ANK2 Missense_Mutation p.D2185Y 0.41 probably_damaging(0.923) TCGA-55-8616-01 4 134071395 134071395 G A PCDH10 Missense_Mutation p.V34M 0.14 deleterious(0) probably_damaging(1) TCGA-55-8616-01 4 138451640 138451640 G T PCDH18 Missense_Mutation p.H535N 0.38 deleterious(0.04) possibly_damaging(0.665) TCGA-55-8616-01 4 153809416 153809416 G A ARFIP1 Missense_Mutation p.R308H 0.10 deleterious(0.01) possibly_damaging(0.84) TCGA-55-8616-01 4 155505594 155505594 A G FGA Silent p.T761T 0.14 TCGA-55-8616-01 4 166929148 166929148 G T TLL1 Nonsense_Mutation p.E289* 0.17 TCGA-55-8616-01 4 170017716 170017716 T A SH3RF1 Missense_Mutation p.N874I 0.37 deleterious(0) probably_damaging(0.966) TCGA-55-8616-01 4 173232885 173232885 C A GALNTL6 Missense_Mutation p.P123Q 0.28 deleterious(0.01) probably_damaging(0.989) TCGA-55-8616-01 4 173942755 173942755 C A GALNTL6 Missense_Mutation p.N539K 0.28 deleterious(0) probably_damaging(1) TCGA-55-8616-01 4 174450014 174450014 G T HAND2 Missense_Mutation p.L143M 0.26 deleterious(0) probably_damaging(0.998) TCGA-55-8616-01 4 174450125 174450125 G A HAND2 Missense_Mutation p.R106C 0.08 deleterious(0) probably_damaging(0.996) TCGA-55-8616-01 4 177114695 177114695 C A SPATA4 Missense_Mutation p.C86F 0.26 deleterious(0) benign(0.016) TCGA-55-8616-01 4 178354502 178354502 C A AGA Splice_Site p.X269_splice 0.16 TCGA-55-8616-01 4 41265286 41265286 G T UCHL1 Silent p.V168V 0.19 TCGA-55-8616-01 4 41750670 41750670 A T PHOX2B 5'UTR 0.36 TCGA-55-8616-01 4 47427852 47427852 C A GABRB1 Nonsense_Mutation p.Y414* 0.10 TCGA-55-8616-01 4 47695086 47695086 C A CORIN Missense_Mutation p.G272C 0.17 tolerated(0.15) possibly_damaging(0.778) TCGA-55-8616-01 4 47695087 47695087 C A CORIN Missense_Mutation p.R271S 0.17 tolerated(0.2) benign(0.004) TCGA-55-8616-01 4 48559680 48559680 C A FRYL Missense_Mutation p.M1305I 0.14 tolerated(0.06) possibly_damaging(0.754) TCGA-55-8616-01 4 54347888 54347888 T A LNX1 Missense_Mutation p.K495M 0.15 deleterious(0.05) probably_damaging(0.999) TCGA-55-8616-01 4 54364994 54364994 G A LNX1 Silent p.Y264Y 0.15 TCGA-55-8616-01 4 5586496 5586496 G A EVC2 Nonsense_Mutation p.Q971* 0.31 TCGA-55-8616-01 4 59422 59422 G A ZNF595 Missense_Mutation p.E35K 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.672) TCGA-55-8616-01 4 5981915 5981915 C A C4orf50 Nonsense_Mutation p.E526* 0.12 TCGA-55-8616-01 4 66467609 66467609 G T EPHA5 Nonsense_Mutation p.C220* 0.24 TCGA-55-8616-01 4 68606249 68606249 G T GNRHR Silent p.A312A 0.29 TCGA-55-8616-01 4 68810291 68810291 G A TMPRSS11A Silent p.F66F 0.27 TCGA-55-8616-01 4 69362431 69362431 G T TMPRSS11E Missense_Mutation p.W394L 0.16 deleterious(0) probably_damaging(1) TCGA-55-8616-01 4 69535943 69535943 C T UGT2B15 Missense_Mutation p.V132I 0.32 tolerated(0.14) benign(0.248) TCGA-55-8616-01 4 83719624 83719624 C A SCD5 Missense_Mutation p.G23W 0.24 deleterious(0.02) benign(0.367) TCGA-55-8616-01 4 91389391 91389391 G A CCSER1 Missense_Mutation p.R537Q 0.31 tolerated(0.09) benign(0.016) TCGA-55-8616-01 4 94750936 94750936 G T ATOH1 Missense_Mutation p.V287L 0.25 tolerated(0.1) benign(0.002) TCGA-55-8616-01 5 11022981 11022981 G T CTNND2 Missense_Mutation p.L967M 0.15 deleterious(0.02) possibly_damaging(0.899) TCGA-55-8616-01 5 126783269 126783269 G A MEGF10 Missense_Mutation p.G917S 0.35 tolerated(0.78) benign(0.003) TCGA-55-8616-01 5 128324356 128324356 C A SLC27A6 Missense_Mutation p.A250D 0.39 tolerated(0.15) probably_damaging(0.98) TCGA-55-8616-01 5 140531308 140531308 G A PCDHB6 Silent p.P490P 0.37 TCGA-55-8616-01 5 150943180 150943180 G T FAT2 Missense_Mutation p.P1094T 0.17 benign(0.021) TCGA-55-8616-01 5 156484989 156484989 G T HAVCR1 5'UTR 0.23 TCGA-55-8616-01 5 160063244 160063244 A T ATP10B Missense_Mutation p.L358H 0.47 tolerated(0.08) possibly_damaging(0.886) TCGA-55-8616-01 5 170725885 170725885 G C RANBP17 3'UTR 0.40 TCGA-55-8616-01 5 170725886 170725886 G T RANBP17 3'UTR 0.40 TCGA-55-8616-01 5 175511919 175511919 C T FAM153B Intron 0.30 TCGA-55-8616-01 5 178551983 178551983 G T ADAMTS2 Silent p.P983P 0.30 TCGA-55-8616-01 5 178551984 178551984 G T ADAMTS2 Missense_Mutation p.P983H 0.29 deleterious(0.01) benign(0.349) TCGA-55-8616-01 5 22078761 22078761 G T CDH12 Missense_Mutation p.L9M 0.08 deleterious(0.05) probably_damaging(0.969) TCGA-55-8616-01 5 24487843 24487843 G C CDH10 Missense_Mutation p.R766G 0.13 tolerated(0.14) benign(0.075) TCGA-55-8616-01 5 24488154 24488154 C A CDH10 Missense_Mutation p.G662V 0.11 deleterious(0) probably_damaging(0.999) TCGA-55-8616-01 5 24535345 24535345 T A CDH10 Missense_Mutation p.R230S 0.57 deleterious(0) possibly_damaging(0.902) TCGA-55-8616-01 5 37292142 37292142 T A NUP155 Splice_Site p.X1346_splice 0.08 TCGA-55-8616-01 5 41061748 41061748 T A MROH2B Missense_Mutation p.N180I 0.54 deleterious(0) benign(0.242) TCGA-55-8616-01 5 44388470 44388470 G C FGF10 Missense_Mutation p.N105K 0.12 tolerated(0.18) benign(0.21) TCGA-55-8616-01 5 55238511 55238511 T A IL6ST Missense_Mutation p.H669L 0.11 deleterious(0.01) benign(0.174) TCGA-55-8616-01 5 72469302 72469302 C A TMEM174 Missense_Mutation p.L78M 0.30 deleterious(0) probably_damaging(0.999) TCGA-55-8616-01 5 7709409 7709409 G T ADCY2 Missense_Mutation p.R496L 0.62 deleterious(0.01) possibly_damaging(0.866) TCGA-55-8616-01 5 9629848 9629848 G T TAS2R1 Silent p.L99L 0.73 TCGA-55-8616-01 6 10907864 10907864 G T SYCP2L Missense_Mutation p.D256Y 0.17 deleterious(0) probably_damaging(0.998) TCGA-55-8616-01 6 122768322 122768322 C T SERINC1 Nonsense_Mutation p.W313* 0.12 TCGA-55-8616-01 6 133834078 133834079 - A EYA4 Frame_Shift_Ins p.T469Nfs*8 0.17 TCGA-55-8616-01 6 146351142 146351142 C A GRM1 Silent p.G163G 0.31 TCGA-55-8616-01 6 155145381 155145381 C T SCAF8 Missense_Mutation p.P647L 0.25 deleterious(0.02) probably_damaging(0.991) TCGA-55-8616-01 6 160664693 160664693 G T SLC22A2 Missense_Mutation p.T397N 0.29 deleterious(0) probably_damaging(0.994) TCGA-55-8616-01 6 161522923 161522923 G T MAP3K4 Splice_Site p.X1225_splice 0.14 TCGA-55-8616-01 6 168298948 168298948 G T MLLT4 Missense_Mutation p.V461L 0.27 tolerated(0.19) benign(0.346) TCGA-55-8616-01 6 169625328 169625329 GG T THBS2 Frame_Shift_Del p.A895Dfs*106 0.27 TCGA-55-8616-01 6 18121925 18121925 C T NHLRC1 Missense_Mutation p.G305S 0.07 tolerated(0.88) benign(0.009) TCGA-55-8616-01 6 24146140 24146140 G A NRSN1 Missense_Mutation p.R185K 0.29 tolerated(1) benign(0.002) TCGA-55-8616-01 6 26251994 26251994 C G HIST1H2BH Missense_Mutation p.S39C 0.23 deleterious_low_confidence(0.02) probably_damaging(0.967) TCGA-55-8616-01 6 29012378 29012378 G A OR2W1 Missense_Mutation p.T192I 0.25 deleterious(0.02) probably_damaging(1) TCGA-55-8616-01 6 2959554 2959554 C A SERPINB6 Missense_Mutation p.A5S 0.27 tolerated(1) benign(0.003) TCGA-55-8616-01 6 31583825 31583825 C A AIF1 Intron 0.37 TCGA-55-8616-01 6 33141291 33141291 C A COL11A2 Silent p.P804P 0.08 TCGA-55-8616-01 6 35211475 35211475 T G SCUBE3 Missense_Mutation p.C672G 0.37 deleterious(0) benign(0.346) TCGA-55-8616-01 6 4037663 4037663 G T PRPF4B Missense_Mutation p.R424L 0.31 deleterious(0.01) benign(0.015) TCGA-55-8616-01 6 41250146 41250146 C A TREM1 Missense_Mutation p.L131F 0.22 deleterious(0) probably_damaging(0.999) TCGA-55-8616-01 6 42146578 42146578 G T GUCA1A Missense_Mutation p.M130I 0.24 tolerated(0.5) benign(0.001) TCGA-55-8616-01 6 44107279 44107279 G T TMEM63B Silent p.L161L 0.12 TCGA-55-8616-01 6 44254222 44254222 G T TCTE1 Missense_Mutation p.L109M 0.31 deleterious(0.01) probably_damaging(0.985) TCGA-55-8616-01 6 44255366 44255366 G T TCTE1 Missense_Mutation p.A66D 0.27 deleterious(0) possibly_damaging(0.851) TCGA-55-8616-01 6 49754485 49754485 T A PGK2 Missense_Mutation p.K139M 0.20 deleterious(0) probably_damaging(0.992) TCGA-55-8616-01 6 51701234 51701234 C A PKHD1 Missense_Mutation p.R2714L 0.26 tolerated(0.12) benign(0) TCGA-55-8616-01 6 52141265 52141265 C A MCM3 Missense_Mutation p.R437L 0.20 deleterious(0) benign(0.318) TCGA-55-8616-01 6 70064157 70064157 C A BAI3 Missense_Mutation p.N1164K 0.33 tolerated(0.23) benign(0.15) TCGA-55-8616-01 6 78172981 78172981 G T HTR1B Missense_Mutation p.P47H 0.41 deleterious(0.01) benign(0.436) TCGA-55-8616-01 7 100230662 100230662 G T TFR2 Missense_Mutation p.L271M 0.15 deleterious(0) possibly_damaging(0.748) TCGA-55-8616-01 7 100382333 100382333 C A ZAN Silent p.G2236G 0.07 TCGA-55-8616-01 7 100678958 100678958 G T MUC17 Missense_Mutation p.V1421F 0.38 unknown(0) TCGA-55-8616-01 7 126173879 126173879 C A GRM8 Silent p.P519P 0.12 TCGA-55-8616-01 7 126249501 126249501 C A GRM8 Missense_Mutation p.R470L 0.40 deleterious(0.02) benign(0.266) TCGA-55-8616-01 7 142498814 142498814 T G TRBC2 Missense_Mutation p.C31G 0.09 deleterious(0) probably_damaging(0.928) TCGA-55-8616-01 7 142572268 142572268 G T TRPV6 Silent p.G476G 0.14 TCGA-55-8616-01 7 142658920 142658920 T A KEL Missense_Mutation p.S15C 0.36 deleterious_low_confidence(0.01) benign(0.237) TCGA-55-8616-01 7 142658954 142658954 A T KEL Silent p.G3G 0.18 TCGA-55-8616-01 7 143039091 143039091 G T CLCN1 Missense_Mutation p.G551V 0.12 deleterious(0) probably_damaging(1) TCGA-55-8616-01 7 143039161 143039161 G T CLCN1 Missense_Mutation p.Q574H 0.43 deleterious(0) benign(0.049) TCGA-55-8616-01 7 143175367 143175367 G T TAS2R41 Silent p.L134L 0.27 TCGA-55-8616-01 7 143807506 143807506 C A OR2A2 Missense_Mutation p.H277Q 0.13 deleterious(0) probably_damaging(0.95) TCGA-55-8616-01 7 146818198 146818198 G T CNTNAP2 Missense_Mutation p.R294S 0.11 tolerated(0.19) benign(0.06) TCGA-55-8616-01 7 149558172 149558172 G A ZNF862 Silent p.G641G 0.33 TCGA-55-8616-01 7 150217451 150217451 T A GIMAP7 Nonsense_Mutation p.L130* 0.41 TCGA-55-8616-01 7 1539247 1539247 C A INTS1 Missense_Mutation p.G236W 0.29 deleterious(0) probably_damaging(0.991) TCGA-55-8616-01 7 156518511 156518511 G A LMBR1 Silent p.A338A 0.33 TCGA-55-8616-01 7 20421422 20421422 C A ITGB8 Missense_Mutation p.L292I 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-55-8616-01 7 27140304 27140304 G T HOXA2 3'UTR 0.07 TCGA-55-8616-01 7 27182836 27182836 C A HOXA5 Missense_Mutation p.D131Y 0.27 deleterious(0.02) benign(0.018) TCGA-55-8616-01 7 2974154 2974154 G T CARD11 Missense_Mutation p.P484H 0.15 deleterious(0.02) benign(0.078) TCGA-55-8616-01 7 31792812 31792812 A C PDE1C 3'UTR 0.21 TCGA-55-8616-01 7 4874742 4874742 C A RADIL Silent p.P304P 0.29 TCGA-55-8616-01 7 55273359 55273359 A T EGFR 3'UTR 0.26 TCGA-55-8616-01 7 56051430 56051430 G T GBAS Nonsense_Mutation p.E152* 0.23 TCGA-55-8616-01 7 57188855 57188855 C A ZNF479 Silent p.T89T 0.25 TCGA-55-8616-01 7 63726766 63726766 C T ZNF679 Missense_Mutation p.S252F 0.35 tolerated(0.4) possibly_damaging(0.472) TCGA-55-8616-01 7 87704996 87704996 G A ADAM22 Missense_Mutation p.V127M 0.40 tolerated(0.1) benign(0.054) TCGA-55-8616-01 7 94049898 94049898 G T COL1A2 Missense_Mutation p.G745W 0.32 unknown(0) TCGA-55-8616-01 7 98445842 98445843 - T TMEM130 Frame_Shift_Ins p.M382Nfs*3 0.38 TCGA-55-8616-01 7 99091045 99091045 C A ZNF394 3'UTR 0.12 TCGA-55-8616-01 8 104987701 104987701 G T RIMS2 Missense_Mutation p.R965I 0.78 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-8616-01 8 105360930 105360930 C A DCSTAMP Silent p.A50A 0.61 TCGA-55-8616-01 8 107718855 107718855 C A OXR1 Missense_Mutation p.S370Y 0.10 deleterious(0) probably_damaging(0.998) TCGA-55-8616-01 8 114449151 114449151 G A CSMD3 5'UTR 0.06 TCGA-55-8616-01 8 116599487 116599487 C A TRPS1 Missense_Mutation p.R814L 0.09 deleterious_low_confidence(0.02) possibly_damaging(0.629) TCGA-55-8616-01 8 124267142 124267142 C G ZHX1 Missense_Mutation p.E349Q 0.69 deleterious(0) probably_damaging(0.99) TCGA-55-8616-01 8 126021565 126021565 A C SQLE Missense_Mutation p.K363T 0.19 tolerated(0.34) benign(0.014) TCGA-55-8616-01 8 131826346 131826346 C G ADCY8 Missense_Mutation p.R961P 0.60 deleterious(0.01) probably_damaging(0.972) TCGA-55-8616-01 8 133673780 133673780 C T LRRC6 Missense_Mutation p.R35K 0.07 tolerated(1) benign(0.004) TCGA-55-8616-01 8 142480703 142480703 G T MROH5 3'UTR 0.78 TCGA-55-8616-01 8 36780043 36780043 G C KCNU1 Missense_Mutation p.G878R 0.24 tolerated(0.15) benign(0.214) TCGA-55-8616-01 8 41839446 41839446 G C KAT6A Missense_Mutation p.P246A 0.52 probably_damaging(0.976) TCGA-55-8616-01 8 49644005 49644005 A T EFCAB1 Missense_Mutation p.V39E 0.54 tolerated(0.85) benign(0.002) TCGA-55-8616-01 8 52321725 52321725 G T PXDNL Missense_Mutation p.A820E 0.47 deleterious(0) probably_damaging(0.999) TCGA-55-8616-01 8 55537555 55537555 A T RP1 Silent p.G371G 0.62 TCGA-55-8616-01 8 6302377 6302377 G A MCPH1 Silent p.R378R 0.29 TCGA-55-8616-01 8 66988974 66988974 G A DNAJC5B Missense_Mutation p.A67T 0.08 deleterious(0.01) probably_damaging(0.969) TCGA-55-8616-01 8 71040695 71040695 C A NCOA2 Missense_Mutation p.L1218F 0.59 tolerated(0.05) benign(0.34) TCGA-55-8616-01 8 71075701 71075701 T C NCOA2 Silent p.Q277Q 0.08 TCGA-55-8616-01 8 74529622 74529622 C A STAU2 Missense_Mutation p.G159W 0.62 deleterious(0) probably_damaging(1) TCGA-55-8616-01 8 76471160 76471160 G T HNF4G Silent p.L327L 0.60 TCGA-55-8616-01 8 77618387 77618387 G T ZFHX4 Silent p.R688R 0.06 TCGA-55-8616-01 8 77764076 77764076 C A ZFHX4 Missense_Mutation p.A1640E 0.12 benign(0.116) TCGA-55-8616-01 8 85441675 85441675 C A RALYL Missense_Mutation p.A53D 0.13 deleterious(0) benign(0.18) TCGA-55-8616-01 8 86027714 86027715 TG - LRRCC1 Frame_Shift_Del p.C277Sfs*4 0.46 TCGA-55-8616-01 8 88885833 88885833 G T DCAF4L2 Missense_Mutation p.P123T 0.08 tolerated(1) benign(0.001) TCGA-55-8616-01 8 89131021 89131021 G T MMP16 Missense_Mutation p.P260H 0.53 deleterious(0.04) probably_damaging(1) TCGA-55-8616-01 8 90798857 90798857 G A RIPK2 Missense_Mutation p.G356S 0.04 tolerated(0.9) benign(0) TCGA-55-8616-01 8 96064406 96064406 G T NDUFAF6 Missense_Mutation p.R274M 0.57 deleterious(0.02) possibly_damaging(0.833) TCGA-55-8616-01 9 101818651 101818651 C A COL15A1 Missense_Mutation p.P1101Q 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-55-8616-01 9 110249590 110249590 G T KLF4 Missense_Mutation p.P362Q 0.19 deleterious(0.02) benign(0.001) TCGA-55-8616-01 9 125486341 125486341 C G OR1L4 Missense_Mutation p.Q25E 0.19 tolerated(0.08) benign(0.008) TCGA-55-8616-01 9 130241233 130241233 G T LRSAM1 Missense_Mutation p.E257D 0.26 deleterious(0.01) probably_damaging(0.935) TCGA-55-8616-01 9 131513522 131513522 T A ZER1 Missense_Mutation p.Q355L 0.26 deleterious(0) probably_damaging(0.977) TCGA-55-8616-01 9 134379692 134379692 C T POMT1 Silent p.S29S 0.25 TCGA-55-8616-01 9 136208347 136208347 C A MED22 3'UTR 0.29 TCGA-55-8616-01 9 137600388 137600388 G T COL5A1 Intron 0.20 TCGA-55-8616-01 9 140077638 140077638 C A ANAPC2 Missense_Mutation p.V409L 0.23 tolerated(0.34) benign(0.069) TCGA-55-8616-01 9 15453102 15453102 G T SNAPC3 Missense_Mutation p.M293I 0.22 deleterious(0.01) probably_damaging(0.973) TCGA-55-8616-01 9 19032872 19032873 - A FAM154A Frame_Shift_Ins p.C12Lfs*15 0.30 TCGA-55-8616-01 9 21202172 21202189 TTGCAAATATCACTAGGC - IFNA7 5'UTR 0.20 TCGA-55-8616-01 9 21239957 21239957 G T IFNA14 5'UTR 0.12 TCGA-55-8616-01 9 34647227 34647227 G T GALT Missense_Mutation p.C75F 0.23 deleterious(0) probably_damaging(0.999) TCGA-55-8616-01 9 36100521 36100521 C T RECK Missense_Mutation p.R427W 0.11 deleterious(0) possibly_damaging(0.895) TCGA-55-8616-01 9 72659009 72659009 G C MAMDC2 5'UTR 0.15 TCGA-55-8616-01 9 77378002 77378002 A G TRPM6 Silent p.S1195S 0.21 TCGA-55-8616-01 9 79323523 79323523 C A PRUNE2 Missense_Mutation p.V1223F 0.22 deleterious(0.02) benign(0.059) TCGA-55-8616-01 9 84605947 84605947 C A SPATA31D1 Missense_Mutation p.P188T 0.29 tolerated(0.14) benign(0.331) TCGA-55-8616-01 9 87635123 87635123 C A NTRK2 Silent p.V725V 0.22 TCGA-55-8616-01 9 88247589 88247589 T A AGTPBP1 Missense_Mutation p.Y628F 0.19 tolerated(0.31) benign(0.32) TCGA-55-8616-01 9 91605865 91605865 C A C9orf47 5'UTR 0.15 TCGA-55-8616-01 9 96439152 96439152 G T PHF2 Missense_Mutation p.A1037S 0.33 tolerated(0.27) benign(0.364) TCGA-55-8616-01 9 99694205 99694205 C A NUTM2G Missense_Mutation p.P73Q 0.17 deleterious(0.04) benign(0.139) TCGA-55-8616-01 X 100503150 100503150 T G DRP2 Missense_Mutation p.M442R 0.16 deleterious(0) possibly_damaging(0.755) TCGA-55-8616-01 X 100880495 100880495 G C ARMCX3 Missense_Mutation p.D176H 0.28 tolerated(0.19) probably_damaging(0.998) TCGA-55-8616-01 X 102968445 102968445 C A GLRA4 Intron 0.16 TCGA-55-8616-01 X 106171781 106171781 G T CLDN2 Missense_Mutation p.C108F 0.29 tolerated(0.21) benign(0.1) TCGA-55-8616-01 X 107288269 107288269 C G VSIG1 5'UTR 0.30 TCGA-55-8616-01 X 107464502 107464502 G T COL4A6 Missense_Mutation p.L84I 0.30 unknown(0) TCGA-55-8616-01 X 107464503 107464503 G T COL4A6 Silent p.G83G 0.30 TCGA-55-8616-01 X 107976882 107976882 C A IRS4 Missense_Mutation p.G898V 0.27 deleterious(0) unknown(0) TCGA-55-8616-01 X 111155726 111155726 G A TRPC5 Silent p.S231S 0.15 TCGA-55-8616-01 X 118752753 118752753 C A SEPT6 Intron 0.16 TCGA-55-8616-01 X 119694153 119694153 G C CUL4B Missense_Mutation p.A132G 0.22 tolerated_low_confidence(0.09) benign(0.109) TCGA-55-8616-01 X 125298849 125298849 C G DCAF12L2 Silent p.V353V 0.10 TCGA-55-8616-01 X 125298976 125298976 C A DCAF12L2 Missense_Mutation p.C311F 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-8616-01 X 125299717 125299717 C A DCAF12L2 Missense_Mutation p.G64V 0.17 tolerated(0.13) possibly_damaging(0.594) TCGA-55-8616-01 X 12736565 12736565 A G FRMPD4 Missense_Mutation p.H1207R 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.811) TCGA-55-8616-01 X 128633732 128633732 C A SMARCA1 Silent p.G418G 0.26 TCGA-55-8616-01 X 130412477 130412477 C G IGSF1 Missense_Mutation p.A672P 0.30 tolerated(0.07) probably_damaging(0.972) TCGA-55-8616-01 X 130419051 130419051 C G IGSF1 Intron 0.23 TCGA-55-8616-01 X 132161025 132161025 T A USP26 Missense_Mutation p.K408N 0.26 deleterious(0.03) possibly_damaging(0.859) TCGA-55-8616-01 X 135067912 135067912 C T SLC9A6 Missense_Mutation p.T84I 0.13 deleterious(0.04) probably_damaging(0.999) TCGA-55-8616-01 X 136113330 136113330 G A GPR101 Silent p.Y168Y 0.24 TCGA-55-8616-01 X 140995410 140995410 C A MAGEC1 Silent p.L740L 0.18 TCGA-55-8616-01 X 149013294 149013294 C T MAGEA8 Missense_Mutation p.S83F 0.16 tolerated(0.07) benign(0.072) TCGA-55-8616-01 X 150348439 150348439 C A GPR50 Nonsense_Mutation p.C128* 0.16 TCGA-55-8616-01 X 150867271 150867271 C G PRRG3 5'UTR 0.20 TCGA-55-8616-01 X 150869520 150869520 C A PRRG3 3'UTR 0.24 TCGA-55-8616-01 X 151283687 151283687 A T RP11-1007I13.4 RNA 0.18 TCGA-55-8616-01 X 153033130 153033130 G A PLXNB3 Missense_Mutation p.C306Y 0.23 deleterious(0) probably_damaging(1) TCGA-55-8616-01 X 153051378 153051378 C A IDH3G Missense_Mutation p.Q377H 0.16 tolerated(0.12) benign(0.029) TCGA-55-8616-01 X 153072736 153072736 C G PDZD4 Missense_Mutation p.E129Q 0.16 deleterious(0.03) probably_damaging(0.979) TCGA-55-8616-01 X 153588707 153588707 G A FLNA Silent p.A1152A 0.18 TCGA-55-8616-01 X 153593511 153593511 C A FLNA Missense_Mutation p.G562W 0.22 deleterious(0) probably_damaging(0.922) TCGA-55-8616-01 X 155003733 155003733 G T SPRY3 Missense_Mutation p.S67I 0.16 tolerated(0.1) possibly_damaging(0.809) TCGA-55-8616-01 X 155119158 155119158 G T VAMP7 Missense_Mutation p.R10M 0.16 deleterious(0) probably_damaging(0.985) TCGA-55-8616-01 X 19984302 19984302 C A CXorf23 Missense_Mutation p.W169C 0.31 deleterious(0) probably_damaging(0.997) TCGA-55-8616-01 X 35821115 35821115 A T MAGEB16 Missense_Mutation p.S268C 0.42 deleterious(0) probably_damaging(0.974) TCGA-55-8616-01 X 37028418 37028418 G T FAM47C Missense_Mutation p.E645D 0.38 tolerated(0.22) possibly_damaging(0.717) TCGA-55-8616-01 X 48547150 48547150 G C WAS Missense_Mutation p.V345L 0.44 tolerated(0.25) benign(0) TCGA-55-8616-01 X 49054291 49054291 G T SYP Missense_Mutation p.A37D 0.12 deleterious(0) probably_damaging(0.988) TCGA-55-8616-01 X 53226203 53226203 G A KDM5C Silent p.A882A 0.18 TCGA-55-8616-01 X 53278000 53278000 C G IQSEC2 Missense_Mutation p.V788L 0.13 deleterious(0.04) possibly_damaging(0.551) TCGA-55-8616-01 X 53571562 53571562 G T HUWE1 Missense_Mutation p.T3737K 0.12 unknown(0) TCGA-55-8616-01 X 55513741 55513741 T A USP51 Silent p.P544P 0.28 TCGA-55-8616-01 X 65412038 65412038 G T HEPH Missense_Mutation p.G431V 0.30 deleterious(0) probably_damaging(1) TCGA-55-8616-01 X 67426497 67426497 C A OPHN1 Missense_Mutation p.W284L 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-55-8616-01 X 69504550 69504550 C T RAB41 3'UTR 0.27 TCGA-55-8616-01 X 70282790 70282790 G A SNX12 Missense_Mutation p.P59S 0.19 deleterious(0) probably_damaging(0.998) TCGA-55-8616-01 X 70320771 70320771 C A FOXO4 Missense_Mutation p.P231T 0.15 deleterious(0.01) benign(0.279) TCGA-55-8616-01 X 77243852 77243852 G T ATP7A Missense_Mutation p.D79Y 0.33 deleterious(0.04) benign(0.049) TCGA-55-8616-01 X 79277775 79277775 C G TBX22 Missense_Mutation p.L3V 0.13 deleterious(0) probably_damaging(0.997) TCGA-55-8616-01 X 84600909 84600909 C G POF1B Missense_Mutation p.G227A 0.13 tolerated_low_confidence(0.23) possibly_damaging(0.82) TCGA-55-8619-01 10 102783327 102783327 C G PDZD7 Silent p.V136V 0.09 TCGA-55-8619-01 12 114832597 114832597 G A TBX5 Silent p.H204H 0.08 TCGA-55-8619-01 13 35632943 35632943 T G NBEA Missense_Mutation p.S394R 0.10 deleterious(0) possibly_damaging(0.882) TCGA-55-8619-01 14 57949821 57949821 G A C14orf105 Silent p.L119L 0.10 TCGA-55-8619-01 14 73640327 73640327 A G PSEN1 Missense_Mutation p.H131R 0.07 deleterious(0.01) benign(0.297) TCGA-55-8619-01 16 22926943 22926943 T C HS3ST2 3'UTR 0.08 TCGA-55-8619-01 19 17057923 17057923 C T CPAMD8 Missense_Mutation p.V922I 0.08 tolerated(0.15) benign(0.271) TCGA-55-8619-01 19 39423302 39423302 C T MRPS12 Missense_Mutation p.R127C 0.08 deleterious(0) probably_damaging(0.998) TCGA-55-8619-01 19 47124819 47124819 G T PTGIR Silent p.I293I 0.07 TCGA-55-8619-01 19 50549267 50549267 C T ZNF473 Missense_Mutation p.R523C 0.11 deleterious(0.03) benign(0) TCGA-55-8619-01 19 54313706 54313706 C T NLRP12 Missense_Mutation p.V403I 0.04 tolerated(0.65) benign(0.083) TCGA-55-8619-01 19 58452348 58452348 T C ZNF256 Missense_Mutation p.K610E 0.07 deleterious(0) probably_damaging(0.986) TCGA-55-8619-01 1 55457909 55457909 A G TMEM61 3'UTR 0.13 TCGA-55-8619-01 1 66833501 66833501 C T PDE4B Missense_Mutation p.R503C 0.07 deleterious(0) probably_damaging(0.987) TCGA-55-8619-01 2 27464950 27464950 G A CAD Missense_Mutation p.D2019N 0.06 deleterious(0) probably_damaging(0.999) TCGA-55-8619-01 3 53844233 53844233 C T CACNA1D Missense_Mutation p.R2054W 0.09 deleterious_low_confidence(0) possibly_damaging(0.629) TCGA-55-8619-01 4 5755633 5755633 G A EVC Silent p.P479P 0.08 TCGA-55-8619-01 6 109323540 109323540 C T SESN1 Missense_Mutation p.G96S 0.07 deleterious(0.01) probably_damaging(1) TCGA-55-8619-01 6 128134734 128134734 G A THEMIS Missense_Mutation p.T351M 0.08 deleterious(0.01) probably_damaging(1) TCGA-55-8619-01 6 51913418 51913418 C A PKHD1 Splice_Site p.X760_splice 0.08 TCGA-55-8619-01 6 7211110 7211110 C T RREB1 Nonsense_Mutation p.R167* 0.06 TCGA-55-8619-01 7 100841499 100841499 C G MOGAT3 Missense_Mutation p.G214A 0.07 deleterious(0) probably_damaging(0.994) TCGA-55-8619-01 7 43548590 43548590 C T HECW1 Missense_Mutation p.R1297W 0.06 deleterious(0) probably_damaging(1) TCGA-55-8619-01 8 102585954 102585954 G T GRHL2 Missense_Mutation p.G265C 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-55-8619-01 8 11606458 11606458 A T GATA4 Missense_Mutation p.E216V 0.07 deleterious(0) probably_damaging(0.96) TCGA-55-8619-01 X 34148327 34148327 C T FAM47A Missense_Mutation p.R690H 0.09 tolerated(0.58) benign(0.272) TCGA-55-8619-01 X 54957055 54957055 G A TRO Missense_Mutation p.G1300S 0.07 tolerated_low_confidence(0.06) possibly_damaging(0.83) TCGA-55-8620-01 10 106924078 106924078 C A SORCS3 Missense_Mutation p.L584I 0.68 deleterious(0) probably_damaging(0.999) TCGA-55-8620-01 10 114905797 114905797 G T TCF7L2 Silent p.T272T 0.56 TCGA-55-8620-01 10 116731952 116731952 G A TRUB1 Missense_Mutation p.V219I 0.30 tolerated(0.19) benign(0.011) TCGA-55-8620-01 10 118389483 118389483 G A PNLIPRP2 Missense_Mutation p.D203N 0.19 tolerated(0.45) benign(0.002) TCGA-55-8620-01 10 125526641 125526641 C A CPXM2 Nonsense_Mutation p.G443* 0.60 TCGA-55-8620-01 10 129245680 129245680 G A DOCK1 Silent p.T1791T 0.47 TCGA-55-8620-01 10 13228163 13228163 G T MCM10 Splice_Site p.X368_splice 0.48 TCGA-55-8620-01 10 20466255 20466255 A T PLXDC2 Splice_Site p.X327_splice 0.42 TCGA-55-8620-01 10 25464717 25464717 A T GPR158 Missense_Mutation p.H123L 0.16 tolerated(0.12) benign(0.015) TCGA-55-8620-01 10 25887177 25887177 G T GPR158 Silent p.P874P 0.45 TCGA-55-8620-01 10 48390619 48390619 G T RBP3 Missense_Mutation p.L87M 0.30 deleterious(0) probably_damaging(0.996) TCGA-55-8620-01 10 70196857 70196857 A C DNA2 Missense_Mutation p.I605M 0.11 deleterious(0.01) benign(0.187) TCGA-55-8620-01 10 70243298 70243298 C T SLC25A16 Missense_Mutation p.R297Q 0.30 tolerated(0.29) benign(0.227) TCGA-55-8620-01 10 71392859 71392859 T C C10orf35 3'UTR 0.55 TCGA-55-8620-01 10 71392860 71392860 G T C10orf35 3'UTR 0.55 TCGA-55-8620-01 10 72015085 72015085 G T NPFFR1 Silent p.T307T 0.20 TCGA-55-8620-01 10 72020415 72020415 C A NPFFR1 Missense_Mutation p.V135L 0.73 deleterious(0.04) possibly_damaging(0.724) TCGA-55-8620-01 10 72020416 72020416 C A NPFFR1 Silent p.L134L 0.73 TCGA-55-8620-01 10 75886060 75886060 C G AP3M1 Missense_Mutation p.S286T 0.29 tolerated(0.17) benign(0.005) TCGA-55-8620-01 10 82348476 82348476 C A SH2D4B Missense_Mutation p.Q196K 0.58 tolerated(0.19) benign(0.02) TCGA-55-8620-01 10 90966214 90966214 C A CH25H 3'UTR 0.57 TCGA-55-8620-01 10 97366293 97366293 C A ALDH18A1 3'UTR 0.29 TCGA-55-8620-01 11 1017255 1017255 G A MUC6 Missense_Mutation p.T1849I 0.10 probably_damaging(0.979) TCGA-55-8620-01 11 102196277 102196277 C T BIRC3 Missense_Mutation p.H312Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-55-8620-01 11 108383990 108383990 C A EXPH5 Missense_Mutation p.Q748H 0.31 tolerated(0.09) benign(0.044) TCGA-55-8620-01 11 111385598 111385598 C T C11orf88 Missense_Mutation p.S30L 0.31 deleterious(0) probably_damaging(0.974) TCGA-55-8620-01 11 119169209 119169209 C A CBL Missense_Mutation p.S798Y 0.38 deleterious_low_confidence(0.01) benign(0.229) TCGA-55-8620-01 11 1213364 1213364 G T MUC5AC RNA 0.11 TCGA-55-8620-01 11 124763836 124763836 C G ROBO4 Missense_Mutation p.G475A 0.33 tolerated(0.19) benign(0.13) TCGA-55-8620-01 11 129739829 129739829 C A NFRKB Missense_Mutation p.A1056S 0.20 tolerated_low_confidence(0.52) possibly_damaging(0.492) TCGA-55-8620-01 11 14901683 14901683 T A CYP2R1 Missense_Mutation p.Q333H 0.42 deleterious(0) probably_damaging(0.999) TCGA-55-8620-01 11 1605902 1605902 G T KRTAP5-1 Missense_Mutation p.S193Y 0.11 deleterious_low_confidence(0.03) unknown(0) TCGA-55-8620-01 11 18127597 18127597 C T SAAL1 5'UTR 0.23 TCGA-55-8620-01 11 30032585 30032585 C A KCNA4 Silent p.A547A 0.25 TCGA-55-8620-01 11 32955505 32955505 G T QSER1 Missense_Mutation p.G772C 0.33 deleterious(0.01) possibly_damaging(0.681) TCGA-55-8620-01 11 34144127 34144127 C T NAT10 Missense_Mutation p.A301V 0.47 deleterious(0) probably_damaging(0.987) TCGA-55-8620-01 11 36595046 36595046 A T RAG1 Silent p.A64A 0.28 TCGA-55-8620-01 11 45891247 45891247 G T CRY2 Missense_Mutation p.W379L 0.41 deleterious(0) possibly_damaging(0.809) TCGA-55-8620-01 11 46898819 46898819 C T LRP4 Missense_Mutation p.A1070T 0.31 tolerated(0.22) possibly_damaging(0.554) TCGA-55-8620-01 11 48511156 48511156 T A OR4A47 Missense_Mutation p.V271E 0.48 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-55-8620-01 11 4929379 4929379 G - OR51A7 Frame_Shift_Del p.M260Ifs*13 0.24 TCGA-55-8620-01 11 55135971 55135971 C A OR4A15 Missense_Mutation p.N204K 0.20 deleterious_low_confidence(0) possibly_damaging(0.471) TCGA-55-8620-01 11 55322816 55322816 A T OR4C15 Missense_Mutation p.K345M 0.50 deleterious_low_confidence(0.02) possibly_damaging(0.855) TCGA-55-8620-01 11 55681187 55681187 C A OR5W2 Missense_Mutation p.S291I 0.50 deleterious(0) possibly_damaging(0.701) TCGA-55-8620-01 11 56128130 56128130 G T OR8J1 Silent p.V136V 0.23 TCGA-55-8620-01 11 56257952 56257952 C G OR5M8 Missense_Mutation p.A299P 0.38 deleterious(0) probably_damaging(0.952) TCGA-55-8620-01 11 56409327 56409327 C T OR5AP2 Missense_Mutation p.D197N 0.45 tolerated(0.06) possibly_damaging(0.898) TCGA-55-8620-01 11 57003454 57003454 T A APLNR Missense_Mutation p.K342M 0.36 deleterious(0.01) possibly_damaging(0.77) TCGA-55-8620-01 11 59211254 59211254 G T OR5A1 Missense_Mutation p.V205L 0.41 tolerated(0.76) benign(0.058) TCGA-55-8620-01 11 59369235 59369235 T A OSBP Missense_Mutation p.Q300L 0.43 deleterious(0) possibly_damaging(0.864) TCGA-55-8620-01 11 60150752 60150752 C A MS4A7 Silent p.T46T 0.22 TCGA-55-8620-01 11 60702146 60702146 G A TMEM132A Silent p.A583A 0.14 TCGA-55-8620-01 11 60786726 60786726 G T CD6 Missense_Mutation p.G648V 0.21 tolerated(0.09) probably_damaging(0.961) TCGA-55-8620-01 11 61213472 61213472 G T SDHAF2 Missense_Mutation p.A144S 0.45 tolerated(0.06) benign(0.176) TCGA-55-8620-01 11 61511996 61511996 G T DAGLA 3'UTR 0.46 TCGA-55-8620-01 11 62189740 62189740 C A SCGB1A1 Missense_Mutation p.L35I 0.16 tolerated(0.11) benign(0.001) TCGA-55-8620-01 11 63586454 63586454 G T C11orf84 Missense_Mutation p.R305L 0.58 tolerated_low_confidence(0.12) benign(0) TCGA-55-8620-01 11 65339032 65339032 G C SSSCA1 Missense_Mutation p.V143L 0.21 tolerated(0.79) benign(0.001) TCGA-55-8620-01 11 67018061 67018061 G T KDM2A Missense_Mutation p.G854W 0.31 deleterious(0.01) benign(0.161) TCGA-55-8620-01 11 68029605 68029605 G - C11orf24 Frame_Shift_Del p.T287Pfs*5 0.19 TCGA-55-8620-01 11 76750775 76750775 G A B3GNT6 Silent p.P60P 0.31 TCGA-55-8620-01 11 92599943 92599943 G T FAT3 Missense_Mutation p.G3899C 0.48 probably_damaging(0.996) TCGA-55-8620-01 11 94113467 94113467 G A GPR83 Missense_Mutation p.P374S 0.08 tolerated(0.65) benign(0.007) TCGA-55-8620-01 11 94310554 94310554 A G PIWIL4 Missense_Mutation p.R137G 0.30 tolerated(0.09) benign(0.005) TCGA-55-8620-01 12 107002582 107002582 G T RFX4 Missense_Mutation p.W26C 0.42 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-55-8620-01 12 109294179 109294179 G C DAO Splice_Site p.X305_splice 0.32 TCGA-55-8620-01 12 109495743 109495743 G T USP30 Missense_Mutation p.G69V 0.34 deleterious(0) probably_damaging(0.998) TCGA-55-8620-01 12 111748207 111748207 G T CUX2 Missense_Mutation p.G541C 0.47 deleterious(0.01) benign(0.285) TCGA-55-8620-01 12 113495957 113495957 C A DTX1 5'UTR 0.67 TCGA-55-8620-01 12 113759116 113759116 C T SLC8B1 Missense_Mutation p.C65Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-55-8620-01 12 123694600 123694600 T G MPHOSPH9 Intron 0.33 TCGA-55-8620-01 12 133226000 133226000 C T POLE Silent p.E1299E 0.06 TCGA-55-8620-01 12 14976097 14976097 A C C12orf60 Silent p.A76A 0.29 TCGA-55-8620-01 12 1992063 1992063 G C CACNA2D4 Missense_Mutation p.I485M 0.29 deleterious(0.02) benign(0.071) TCGA-55-8620-01 12 21695438 21695438 G T GYS2 Missense_Mutation p.T546N 0.22 tolerated(0.19) benign(0.243) TCGA-55-8620-01 12 27933832 27933832 T A KLHL42 Missense_Mutation p.M190K 0.47 deleterious(0) benign(0.176) TCGA-55-8620-01 12 29523129 29523129 C A ERGIC2 Missense_Mutation p.A45S 0.38 tolerated(0.21) benign(0.14) TCGA-55-8620-01 12 29671461 29671461 C T TMTC1 Silent p.L656L 0.23 TCGA-55-8620-01 12 31240902 31240902 A C DDX11 Missense_Mutation p.E223D 0.29 tolerated(0.18) probably_damaging(0.967) TCGA-55-8620-01 12 32136519 32136519 A T KIAA1551 Missense_Mutation p.Q877L 0.37 tolerated(0.65) benign(0.003) TCGA-55-8620-01 12 40114818 40114818 A T C12orf40 Missense_Mutation p.H575L 0.34 deleterious(0.02) benign(0.311) TCGA-55-8620-01 12 40626124 40626124 A G LRRK2 Missense_Mutation p.M96V 0.15 tolerated(0.07) benign(0.001) TCGA-55-8620-01 12 43822234 43822234 G T ADAMTS20 Missense_Mutation p.P1252H 0.28 deleterious(0) probably_damaging(0.998) TCGA-55-8620-01 12 49391600 49391600 C A DDN Silent p.A353A 0.39 TCGA-55-8620-01 12 51203289 51203289 A T ATF1 Missense_Mutation p.D82V 0.26 deleterious(0.01) possibly_damaging(0.529) TCGA-55-8620-01 12 52795114 52795114 G - KRT82 Frame_Shift_Del p.L214Cfs*12 0.24 TCGA-55-8620-01 12 6635322 6635322 C T NCAPD2 Nonsense_Mutation p.Q813* 0.31 TCGA-55-8620-01 12 68646313 68646313 C A IL22 Missense_Mutation p.A123S 0.24 tolerated(0.23) benign(0.006) TCGA-55-8620-01 12 70735910 70735910 C T CNOT2 Missense_Mutation p.S401L 0.34 deleterious(0.03) probably_damaging(0.991) TCGA-55-8620-01 12 70952955 70952955 G T PTPRB Intron 0.29 TCGA-55-8620-01 12 78513164 78513164 G A NAV3 Missense_Mutation p.S1063N 0.29 tolerated(0.48) benign(0.004) TCGA-55-8620-01 12 85518017 85518017 A C LRRIQ1 Missense_Mutation p.T1243P 0.30 tolerated(0.12) benign(0.445) TCGA-55-8620-01 12 96104257 96104257 T A NTN4 Missense_Mutation p.D381V 0.21 deleterious(0) probably_damaging(0.976) TCGA-55-8620-01 13 102227855 102227855 G T ITGBL1 Missense_Mutation p.D182Y 0.65 deleterious(0) probably_damaging(1) TCGA-55-8620-01 13 29041701 29041701 G T FLT1 Missense_Mutation p.Q40K 0.61 tolerated(0.09) benign(0.351) TCGA-55-8620-01 13 31713031 31713031 C T HSPH1 Missense_Mutation p.G699S 0.51 deleterious(0.02) probably_damaging(1) TCGA-55-8620-01 13 49280982 49280982 C A CYSLTR2 Missense_Mutation p.P10Q 0.67 tolerated(0.56) benign(0.216) TCGA-55-8620-01 13 52345612 52345612 C T DHRS12 Intron 0.31 TCGA-55-8620-01 13 52548454 52548454 T C ATP7B Missense_Mutation p.Y301C 0.43 deleterious(0) benign(0.078) TCGA-55-8620-01 13 73346415 73346415 T C DIS3 Splice_Site p.X463_splice 0.91 TCGA-55-8620-01 14 102874876 102874876 G T TECPR2 Missense_Mutation p.A134S 0.32 deleterious(0.01) possibly_damaging(0.847) TCGA-55-8620-01 14 105415976 105415976 G T AHNAK2 Missense_Mutation p.P1938T 0.31 possibly_damaging(0.634) TCGA-55-8620-01 14 105615378 105615378 G A JAG2 Missense_Mutation p.A601V 0.12 tolerated(0.26) benign(0.002) TCGA-55-8620-01 14 106641854 106641854 C A IGHV1-18 Missense_Mutation p.Q20H 0.38 deleterious(0) probably_damaging(0.954) TCGA-55-8620-01 14 106963030 106963030 C A IGHV1-45 Missense_Mutation p.Q84H 0.31 deleterious(0) probably_damaging(0.97) TCGA-55-8620-01 14 19558993 19558993 C A POTEG Silent p.A213A 0.11 TCGA-55-8620-01 14 20344477 20344477 C A OR4K2 Silent p.L17L 0.21 TCGA-55-8620-01 14 21024740 21024740 G C RNASE9 Nonsense_Mutation p.Y168* 0.15 TCGA-55-8620-01 14 21558602 21558602 G C ZNF219 3'UTR 0.17 TCGA-55-8620-01 14 24546521 24546521 C G CPNE6 Missense_Mutation p.D486E 0.22 tolerated(0.21) benign(0.346) TCGA-55-8620-01 14 24737103 24737103 C A RABGGTA Missense_Mutation p.E403D 0.09 tolerated(0.45) benign(0.003) TCGA-55-8620-01 14 26917086 26917086 C G NOVA1 3'UTR 0.19 TCGA-55-8620-01 14 35736032 35736033 GA T KIAA0391 Frame_Shift_Del p.E459* 0.20 TCGA-55-8620-01 14 42356616 42356616 G T LRFN5 Missense_Mutation p.C263F 0.36 deleterious(0) probably_damaging(0.997) TCGA-55-8620-01 14 47530459 47530459 G C MDGA2 Missense_Mutation p.S506R 0.27 tolerated(0.12) probably_damaging(0.988) TCGA-55-8620-01 14 51223245 51223245 C G NIN Silent p.T1501T 0.14 TCGA-55-8620-01 14 58923521 58923521 T A KIAA0586 Missense_Mutation p.M505K 0.20 deleterious(0) benign(0.066) TCGA-55-8620-01 14 58923522 58923522 G T KIAA0586 Missense_Mutation p.M505I 0.21 tolerated(0.82) benign(0.001) TCGA-55-8620-01 14 63779818 63779818 C A GPHB5 RNA 0.25 TCGA-55-8620-01 14 71197238 71197238 C T MAP3K9 Silent p.G1072G 0.31 TCGA-55-8620-01 14 75018955 75018955 G A LTBP2 Missense_Mutation p.P445L 0.37 tolerated(0.13) benign(0.001) TCGA-55-8620-01 14 75748141 75748141 G A FOS 3'UTR 0.24 TCGA-55-8620-01 14 86088384 86088384 G T FLRT2 Missense_Mutation p.V176F 0.33 tolerated(0.71) benign(0.065) TCGA-55-8620-01 14 94964159 94964159 C A SERPINA12 Silent p.L192L 0.23 TCGA-55-8620-01 14 96152897 96152897 C G TCL1B Silent p.T31T 0.35 TCGA-55-8620-01 15 24922103 24922103 G T NPAP1 Missense_Mutation p.E363D 0.10 tolerated(0.51) benign(0.084) TCGA-55-8620-01 15 24923094 24923094 C A NPAP1 Missense_Mutation p.P694T 0.27 tolerated(0.88) benign(0.08) TCGA-55-8620-01 15 25438424 25438424 G C SNORD115-11 3'Flank 0.36 TCGA-55-8620-01 15 25453248 25453248 T A SNORD115-21 RNA 0.21 TCGA-55-8620-01 15 25486738 25486738 C A SNORD115-40 5'Flank 0.31 TCGA-55-8620-01 15 25928562 25928562 C A ATP10A Missense_Mutation p.W1121C 0.28 deleterious(0) benign(0.416) TCGA-55-8620-01 15 28263612 28263612 C A OCA2 Missense_Mutation p.R246S 0.42 tolerated(0.49) benign(0.002) TCGA-55-8620-01 15 33256312 33256315 TTGA GG FMN1 Frame_Shift_Del p.V821Afs*21 0.20 TCGA-55-8620-01 15 34534324 34534324 T C SLC12A6 Missense_Mutation p.Y714C 0.44 deleterious(0) probably_damaging(0.986) TCGA-55-8620-01 15 35162952 35162952 C A AQR Splice_Site p.X1256_splice 0.36 TCGA-55-8620-01 15 42276027 42276027 A G PLA2G4E Silent p.N844N 0.47 TCGA-55-8620-01 15 43661798 43661798 G C ZSCAN29 Missense_Mutation p.S105C 0.32 tolerated(0.18) benign(0.001) TCGA-55-8620-01 15 44028269 44028269 C T RNU6-354P 5'Flank 0.20 TCGA-55-8620-01 15 44877865 44877865 T C SPG11 Missense_Mutation p.E1697G 0.21 tolerated(0.37) benign(0.043) TCGA-55-8620-01 15 65112091 65112091 C A PIF1 Missense_Mutation p.D430Y 0.31 deleterious(0) probably_damaging(1) TCGA-55-8620-01 15 65112092 65112092 C A PIF1 Missense_Mutation p.Q429H 0.32 deleterious(0.02) probably_damaging(0.996) TCGA-55-8620-01 15 65782610 65782610 C A DPP8 Missense_Mutation p.R264I 0.12 tolerated(0.39) possibly_damaging(0.588) TCGA-55-8620-01 15 69238562 69238562 T A SPESP1 Missense_Mutation p.I230N 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-8620-01 15 71128780 71128780 C A LARP6 Missense_Mutation p.D89Y 0.41 deleterious(0) probably_damaging(0.968) TCGA-55-8620-01 15 74328486 74328486 G T PML Intron 0.24 TCGA-55-8620-01 15 77907171 77907171 T A LINGO1 Missense_Mutation p.N360Y 0.33 deleterious(0.02) possibly_damaging(0.845) TCGA-55-8620-01 15 78765812 78765812 A C IREB2 Intron 0.29 TCGA-55-8620-01 15 90020807 90020807 G T RHCG Silent p.G351G 0.24 TCGA-55-8620-01 15 90348376 90348376 G T ANPEP Missense_Mutation p.T277K 0.14 deleterious(0) probably_damaging(0.997) TCGA-55-8620-01 16 19498303 19498303 C G TMC5 Missense_Mutation p.I800M 0.44 tolerated(0.07) probably_damaging(0.951) TCGA-55-8620-01 16 20344650 20344650 G C UMOD Missense_Mutation p.L637V 0.14 tolerated(0.36) unknown(0) TCGA-55-8620-01 16 20344651 20344651 G C UMOD Silent p.T636T 0.11 TCGA-55-8620-01 16 20476843 20476843 G T ACSM2A Missense_Mutation p.G61V 0.30 deleterious(0) probably_damaging(0.999) TCGA-55-8620-01 16 21212741 21212741 G A ZP2 Missense_Mutation p.T548M 0.27 deleterious(0) probably_damaging(0.999) TCGA-55-8620-01 16 2159029 2159029 C A PKD1 Missense_Mutation p.G2047C 0.48 possibly_damaging(0.75) TCGA-55-8620-01 16 2225359 2225359 G C TRAF7 Missense_Mutation p.V482L 0.12 deleterious(0.01) possibly_damaging(0.765) TCGA-55-8620-01 16 3071842 3071842 C T TNFRSF12A 3'UTR 0.21 TCGA-55-8620-01 16 3100489 3100489 C G MMP25 Missense_Mutation p.H201Q 0.28 deleterious(0.01) probably_damaging(0.93) TCGA-55-8620-01 16 313775 313775 G T ITFG3 Splice_Site p.X396_splice 0.16 TCGA-55-8620-01 16 33020656 33020656 C A IGHV3OR16-8 Missense_Mutation p.Q22K 0.25 tolerated_low_confidence(0.13) benign(0.059) TCGA-55-8620-01 16 3843416 3843416 G C CREBBP Missense_Mutation p.T396R 0.31 probably_damaging(0.995) TCGA-55-8620-01 16 4902828 4902828 A G UBN1 5'UTR 0.11 TCGA-55-8620-01 16 50327264 50327264 G T ADCY7 Splice_Site p.X230_splice 0.54 TCGA-55-8620-01 16 53485693 53485693 A C RBL2 Missense_Mutation p.N239T 0.34 deleterious(0) probably_damaging(0.996) TCGA-55-8620-01 16 54319068 54319068 C T IRX3 Missense_Mutation p.G242D 0.36 tolerated(0.67) probably_damaging(0.931) TCGA-55-8620-01 16 57464215 57464215 C T CIAPIN1 Silent p.K261K 0.56 TCGA-55-8620-01 16 57684226 57684226 G C GPR56 Silent p.T9T 0.58 TCGA-55-8620-01 16 58713927 58713927 G C SLC38A7 Missense_Mutation p.P35R 0.62 tolerated(0.18) benign(0.004) TCGA-55-8620-01 16 68337950 68337950 G A SLC7A6OS Silent p.P219P 0.61 TCGA-55-8620-01 16 77918617 77918617 G T VAT1L Missense_Mutation p.R332L 0.53 tolerated(0.18) benign(0.134) TCGA-55-8620-01 16 88643526 88643526 G A ZC3H18 5'UTR 0.06 TCGA-55-8620-01 17 10402395 10402395 G T MYH1 Missense_Mutation p.Q1294K 0.44 tolerated(0.11) benign(0.007) TCGA-55-8620-01 17 15535987 15535987 T A RP11-385D13.1 Missense_Mutation p.E284V 0.25 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-55-8620-01 17 17921932 17921932 G A ATPAF2 Silent p.A267A 0.22 TCGA-55-8620-01 17 18205677 18205677 T C TOP3A Missense_Mutation p.I239V 0.29 tolerated(0.19) benign(0.116) TCGA-55-8620-01 17 19680990 19680990 C A ULK2 Nonsense_Mutation p.E986* 0.22 TCGA-55-8620-01 17 2200541 2200541 T G SMG6 Missense_Mutation p.K716T 0.49 deleterious(0.03) probably_damaging(0.966) TCGA-55-8620-01 17 26864260 26864260 C T FOXN1 Missense_Mutation p.P585S 0.06 tolerated(0.33) benign(0.001) TCGA-55-8620-01 17 3144215 3144215 G C OR1D4 RNA 0.34 TCGA-55-8620-01 17 3144216 3144216 G T OR1D4 RNA 0.37 TCGA-55-8620-01 17 33513543 33513543 T C UNC45B Missense_Mutation p.C921R 0.45 deleterious(0) benign(0.391) TCGA-55-8620-01 17 34144737 34144737 C T TAF15 Nonsense_Mutation p.Q9* 0.17 TCGA-55-8620-01 17 39274545 39274545 G T KRTAP4-11 Missense_Mutation p.S8Y 0.54 deleterious(0) unknown(0) TCGA-55-8620-01 17 39502726 39502726 C T KRT33A Silent p.R357R 0.43 TCGA-55-8620-01 17 3967957 3967957 G A ZZEF1 Silent p.A1472A 0.17 TCGA-55-8620-01 17 41243908 41243908 C A BRCA1 Nonsense_Mutation p.E1214* 0.53 TCGA-55-8620-01 17 41738786 41738786 C T MEOX1 Silent p.P39P 0.13 TCGA-55-8620-01 17 42328923 42328923 C T SLC4A1 Missense_Mutation p.R782H 0.21 tolerated(0.59) benign(0.009) TCGA-55-8620-01 17 4575038 4575038 G A PELP1 Missense_Mutation p.P1083L 0.52 unknown(0) TCGA-55-8620-01 17 4575046 4575046 T G PELP1 Silent p.P1080P 0.55 TCGA-55-8620-01 17 5437274 5437274 C A NLRP1 Missense_Mutation p.D999Y 0.50 deleterious(0) benign(0.299) TCGA-55-8620-01 17 61613225 61613225 A T KCNH6 Nonsense_Mutation p.K433* 0.38 TCGA-55-8620-01 17 61766975 61766975 C T MAP3K3 Silent p.L346L 0.44 TCGA-55-8620-01 17 62080045 62080045 C T C17orf72 3'Flank 0.28 TCGA-55-8620-01 17 63200348 63200348 A C RGS9 Missense_Mutation p.K378Q 0.17 tolerated(0.17) benign(0.114) TCGA-55-8620-01 17 67124866 67124866 A T ABCA6 Missense_Mutation p.F338Y 0.23 deleterious(0) probably_damaging(0.943) TCGA-55-8620-01 17 72667679 72667679 T A CTD-2006K23.2 3'Flank 0.42 TCGA-55-8620-01 17 73240738 73240738 G A GGA3 Missense_Mutation p.R88C 0.04 deleterious(0) probably_damaging(1) TCGA-55-8620-01 17 7464309 7464309 C T TNFSF13 3'UTR 0.13 TCGA-55-8620-01 17 7499145 7499145 C A FXR2 Silent p.G276G 0.56 TCGA-55-8620-01 17 7577100 7577100 T C TP53 Missense_Mutation p.R280G 0.51 deleterious(0) probably_damaging(0.947) TCGA-55-8620-01 17 77755714 77755714 G A CBX2 Intron 0.13 TCGA-55-8620-01 17 79169707 79169707 C G AZI1 Silent p.V648V 0.20 TCGA-55-8620-01 17 79202797 79202797 C T ENTHD2 Silent p.S503S 0.40 TCGA-55-8620-01 17 79419767 79419767 G T RP11-1055B8.7 Silent p.R1445R 0.55 TCGA-55-8620-01 17 79847110 79847110 C A ALYREF Silent p.R162R 0.16 TCGA-55-8620-01 17 80210951 80210951 T C CSNK1D Missense_Mutation p.E169G 0.19 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-55-8620-01 17 80333310 80333310 C A UTS2R Silent p.L370L 0.15 TCGA-55-8620-01 17 80400335 80400335 G A HEXDC Missense_Mutation p.R542Q 0.13 tolerated_low_confidence(0.37) benign(0) TCGA-55-8620-01 17 9745934 9745934 G T GLP2R Splice_Site p.X168_splice 0.62 TCGA-55-8620-01 18 12348284 12348284 G A AFG3L2 Nonsense_Mutation p.R551* 0.23 TCGA-55-8620-01 18 14537833 14537833 G C POTEC Silent p.L259L 0.14 TCGA-55-8620-01 18 23667528 23667528 T C SS18 Missense_Mutation p.N28S 0.16 deleterious(0) probably_damaging(0.992) TCGA-55-8620-01 18 34853036 34853036 G A CELF4 Nonsense_Mutation p.Q298* 0.18 TCGA-55-8620-01 18 40850323 40850323 C T SYT4 Missense_Mutation p.V421M 0.39 tolerated(0.2) benign(0.001) TCGA-55-8620-01 18 54483283 54483283 C A WDR7 Missense_Mutation p.A1071E 0.21 tolerated(1) benign(0.009) TCGA-55-8620-01 18 5489045 5489045 C A EPB41L3 Missense_Mutation p.E46D 0.15 tolerated(0.11) benign(0.004) TCGA-55-8620-01 18 56586017 56586017 G T ZNF532 Silent p.G166G 0.26 TCGA-55-8620-01 18 57115240 57115240 G T CCBE1 Silent p.G250G 0.18 TCGA-55-8620-01 18 64211252 64211252 G T CDH19 Silent p.G390G 0.35 TCGA-55-8620-01 18 72999650 72999650 C T TSHZ1 Missense_Mutation p.P718L 0.14 deleterious(0) possibly_damaging(0.546) TCGA-55-8620-01 18 8638265 8638265 C T RAB12 3'UTR 0.38 TCGA-55-8620-01 19 10602329 10602329 C A KEAP1 Missense_Mutation p.G417W 0.67 deleterious(0) probably_damaging(1) TCGA-55-8620-01 19 11976862 11976862 A G ZNF439 5'UTR 0.72 TCGA-55-8620-01 19 12429697 12429697 C T ZNF563 Missense_Mutation p.R381Q 0.24 tolerated(0.59) benign(0.126) TCGA-55-8620-01 19 13410157 13410157 G A CACNA1A Nonsense_Mutation p.Q764* 0.67 TCGA-55-8620-01 19 17306114 17306114 G A MYO9B Missense_Mutation p.G1293D 0.15 deleterious(0.04) benign(0.13) TCGA-55-8620-01 19 17877620 17877620 G T FCHO1 Splice_Site p.X112_splice 0.58 TCGA-55-8620-01 19 18779362 18779362 C T KLHL26 Silent p.R385R 0.09 TCGA-55-8620-01 19 20116747 20116747 C T ZNF682 3'UTR 0.14 TCGA-55-8620-01 19 20807630 20807630 C G ZNF626 Missense_Mutation p.K351N 0.67 tolerated(1) benign(0.005) TCGA-55-8620-01 19 21950308 21950308 A G ZNF100 5'UTR 0.64 TCGA-55-8620-01 19 31039378 31039378 G T ZNF536 Missense_Mutation p.G951V 0.46 tolerated(0.07) benign(0.193) TCGA-55-8620-01 19 31769261 31769261 C A TSHZ3 Missense_Mutation p.V480F 0.45 tolerated(0.05) benign(0.1) TCGA-55-8620-01 19 31769262 31769262 C T TSHZ3 Silent p.A479A 0.04 TCGA-55-8620-01 19 35749960 35749960 C T LSR Silent p.I237I 0.06 TCGA-55-8620-01 19 38969090 38969090 C T RYR1 Silent p.N1490N 0.54 TCGA-55-8620-01 19 39369674 39369674 T A SIRT2 3'UTR 0.24 TCGA-55-8620-01 19 39880711 39880711 G A PAF1 Silent p.N56N 0.05 TCGA-55-8620-01 19 40030230 40030230 A G EID2 Missense_Mutation p.Y164H 0.55 tolerated(0.11) possibly_damaging(0.607) TCGA-55-8620-01 19 40724124 40724124 G T TTC9B Silent p.G55G 0.39 TCGA-55-8620-01 19 43772245 43772245 G C PSG9 Missense_Mutation p.Q41E 0.18 tolerated(0.4) benign(0.008) TCGA-55-8620-01 19 43866414 43866414 G A CD177 3'UTR 0.25 TCGA-55-8620-01 19 46526242 46526242 G T PGLYRP1 Missense_Mutation p.P13H 0.15 tolerated(0.06) benign(0) TCGA-55-8620-01 19 46997611 46997611 G T PNMAL2 Missense_Mutation p.P371H 0.28 deleterious(0) benign(0.016) TCGA-55-8620-01 19 47151648 47151648 T A DACT3 3'UTR 0.20 TCGA-55-8620-01 19 49129491 49129491 G A SPHK2 Missense_Mutation p.R128Q 0.23 deleterious(0) benign(0.022) TCGA-55-8620-01 19 49842789 49842789 C A CD37 Intron 0.19 TCGA-55-8620-01 19 50148298 50148298 T C SCAF1 Silent p.D5D 0.18 TCGA-55-8620-01 19 50364715 50364715 T C PNKP Missense_Mutation p.Y480C 0.20 tolerated(0.09) possibly_damaging(0.838) TCGA-55-8620-01 19 52887983 52887983 G T ZNF880 Nonsense_Mutation p.E384* 0.23 TCGA-55-8620-01 19 53057783 53057783 T C ZNF808 Silent p.S538S 0.44 TCGA-55-8620-01 19 53270452 53270452 C T ZNF600 Missense_Mutation p.G186E 0.16 tolerated(0.18) benign(0.06) TCGA-55-8620-01 19 53793642 53793642 G T BIRC8 5'UTR 0.52 TCGA-55-8620-01 19 54240122 54240122 G A MIR516B1 RNA 0.17 TCGA-55-8620-01 19 54245850 54245850 G T MIR520H RNA 0.18 TCGA-55-8620-01 19 54304528 54304528 C A NLRP12 Silent p.L903L 0.23 TCGA-55-8620-01 19 54308690 54308690 C G NLRP12 Missense_Mutation p.R753P 0.13 tolerated(0.21) benign(0.011) TCGA-55-8620-01 19 54403522 54403522 G T PRKCG Silent p.G439G 0.57 TCGA-55-8620-01 19 54780755 54780755 G C LILRB2 Missense_Mutation p.I463M 0.54 deleterious(0.02) possibly_damaging(0.603) TCGA-55-8620-01 19 54818598 54818598 C A LILRA5 3'UTR 0.22 TCGA-55-8620-01 19 55144739 55144739 C G LILRB1 Missense_Mutation p.P411A 0.21 tolerated(0.16) benign(0.307) TCGA-55-8620-01 19 55341795 55341795 G A KIR3DL1 3'UTR 0.76 TCGA-55-8620-01 19 56226467 56226467 G A NLRP9 Silent p.L819L 0.42 TCGA-55-8620-01 19 56369489 56369489 G T NLRP4 Missense_Mutation p.D244Y 0.41 deleterious(0) probably_damaging(0.95) TCGA-55-8620-01 19 56565117 56565117 G T NLRP5 Missense_Mutation p.G1081V 0.47 deleterious(0) probably_damaging(1) TCGA-55-8620-01 19 57037102 57037102 T G ZNF471 Missense_Mutation p.S556A 0.17 tolerated(0.28) benign(0.016) TCGA-55-8620-01 19 57325486 57325486 C A PEG3 Nonsense_Mutation p.E1442* 0.16 TCGA-55-8620-01 19 58966874 58966874 A T ZNF324B Missense_Mutation p.Q188L 0.33 tolerated(0.25) benign(0) TCGA-55-8620-01 19 6374527 6374527 C T ALKBH7 Missense_Mutation p.R144W 0.07 deleterious(0) probably_damaging(0.98) TCGA-55-8620-01 19 814917 814917 C T LPPR3 Missense_Mutation p.G190S 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-55-8620-01 19 9046073 9046073 T A MUC16 Missense_Mutation p.H11853L 0.65 benign(0) TCGA-55-8620-01 19 9063686 9063686 A G MUC16 Silent p.S7920S 0.65 TCGA-55-8620-01 1 107866928 107866928 G C NTNG1 Missense_Mutation p.E91Q 0.27 deleterious(0.03) probably_damaging(0.994) TCGA-55-8620-01 1 12853416 12853416 G T PRAMEF1 Missense_Mutation p.G14W 0.22 deleterious(0) possibly_damaging(0.564) TCGA-55-8620-01 1 149885107 149885107 C A SV2A Missense_Mutation p.G96W 0.28 deleterious(0) probably_damaging(1) TCGA-55-8620-01 1 153177368 153177368 C A LELP1 Missense_Mutation p.P62H 0.30 deleterious_low_confidence(0.01) unknown(0) TCGA-55-8620-01 1 158299232 158299232 C T CD1B Missense_Mutation p.G272R 0.31 tolerated(0.6) benign(0.163) TCGA-55-8620-01 1 158609713 158609713 G T SPTA1 Missense_Mutation p.R1608S 0.29 deleterious(0.01) probably_damaging(1) TCGA-55-8620-01 1 158612639 158612639 A C SPTA1 Missense_Mutation p.C1524G 0.31 tolerated(0.32) probably_damaging(0.966) TCGA-55-8620-01 1 158736474 158736474 G T OR6N1 5'UTR 0.27 TCGA-55-8620-01 1 160389322 160389322 G A VANGL2 Silent p.Q241Q 0.20 TCGA-55-8620-01 1 168550304 168550304 G A XCL1 Missense_Mutation p.R64H 0.44 deleterious(0.03) possibly_damaging(0.631) TCGA-55-8620-01 1 175092718 175092718 C A TNN Missense_Mutation p.P945T 0.17 deleterious(0) probably_damaging(0.986) TCGA-55-8620-01 1 17681146 17681146 T A PADI4 Missense_Mutation p.L425Q 0.39 deleterious(0) probably_damaging(1) TCGA-55-8620-01 1 176984011 176984011 C A ASTN1 Missense_Mutation p.G480V 0.17 deleterious(0) possibly_damaging(0.522) TCGA-55-8620-01 1 180166085 180166085 G T QSOX1 Silent p.L719L 0.12 TCGA-55-8620-01 1 186645312 186645312 C G PTGS2 Missense_Mutation p.E325D 0.12 deleterious(0) possibly_damaging(0.903) TCGA-55-8620-01 1 186915792 186915792 G T PLA2G4A Nonsense_Mutation p.E353* 0.12 TCGA-55-8620-01 1 197398713 197398713 C A CRB1 Silent p.A937A 0.26 TCGA-55-8620-01 1 197398714 197398714 C A CRB1 Missense_Mutation p.Q938K 0.27 deleterious(0.03) benign(0.049) TCGA-55-8620-01 1 204124977 204124977 T C REN Missense_Mutation p.T344A 0.10 tolerated(0.21) benign(0.154) TCGA-55-8620-01 1 204978689 204978689 C A NFASC Nonsense_Mutation p.Y1098* 0.20 TCGA-55-8620-01 1 211449606 211449606 G A RCOR3 Missense_Mutation p.G121D 0.15 deleterious(0) probably_damaging(1) TCGA-55-8620-01 1 228563841 228563841 C A OBSCN Missense_Mutation p.P8597H 0.33 probably_damaging(0.998) TCGA-55-8620-01 1 228582508 228582508 C A TRIM11 Silent p.S435S 0.16 TCGA-55-8620-01 1 231673021 231673021 G C TSNAX Missense_Mutation p.D62H 0.33 deleterious(0) probably_damaging(1) TCGA-55-8620-01 1 23239051 23239051 C G EPHB2 Silent p.A938A 0.12 TCGA-55-8620-01 1 238050819 238050819 A T ZP4 Missense_Mutation p.V199E 0.41 deleterious(0.04) possibly_damaging(0.81) TCGA-55-8620-01 1 242428691 242428691 T A PLD5 Silent p.L185L 0.29 TCGA-55-8620-01 1 24447567 24447567 C - IL22RA1 Frame_Shift_Del p.E485Rfs*8 0.23 TCGA-55-8620-01 1 247752191 247752191 T A OR2G2 Missense_Mutation p.V177E 0.41 deleterious(0) probably_damaging(0.968) TCGA-55-8620-01 1 247835438 247835438 A G OR13G1 Silent p.F302F 0.36 TCGA-55-8620-01 1 248028147 248028147 G T TRIM58 Missense_Mutation p.K219N 0.21 tolerated(0.31) benign(0.123) TCGA-55-8620-01 1 248039618 248039618 G T TRIM58 Nonsense_Mutation p.G430* 0.16 TCGA-55-8620-01 1 248616420 248616420 C A OR2T2 Missense_Mutation p.L108M 0.09 tolerated(0.1) probably_damaging(0.998) TCGA-55-8620-01 1 26624543 26624543 G A UBXN11 Silent p.S70S 0.40 TCGA-55-8620-01 1 27620600 27620600 C T WDTC1 Silent p.Y250Y 0.27 TCGA-55-8620-01 1 29486922 29486922 C A SRSF4 Missense_Mutation p.G72V 0.27 deleterious(0.01) probably_damaging(0.961) TCGA-55-8620-01 1 32843616 32843616 C A BSDC1 Missense_Mutation p.A228S 0.36 tolerated(0.05) probably_damaging(0.918) TCGA-55-8620-01 1 33945143 33945143 G T ZSCAN20 Missense_Mutation p.R85L 0.21 deleterious(0.01) possibly_damaging(0.821) TCGA-55-8620-01 1 34401376 34401376 G - CSMD2 Frame_Shift_Del p.L193Cfs*119 0.34 TCGA-55-8620-01 1 3624157 3624177 CCGCGCGGCCTCGGCCAGCCC - TP73 In_Frame_Del p.R78_P84del 0.40 TCGA-55-8620-01 1 39801548 39801548 G T MACF1 Intron 0.32 TCGA-55-8620-01 1 40775791 40775791 C A COL9A2 Missense_Mutation p.G262W 0.23 deleterious(0) probably_damaging(0.965) TCGA-55-8620-01 1 4772157 4772157 C - AJAP1 Frame_Shift_Del p.P77Rfs*76 0.25 TCGA-55-8620-01 1 6204158 6204158 G A CHD5 Silent p.D620D 0.29 TCGA-55-8620-01 1 65243329 65243329 G A RAVER2 Missense_Mutation p.E114K 0.32 deleterious(0) possibly_damaging(0.469) TCGA-55-8620-01 1 67148051 67148051 T C SGIP1 Silent p.S438S 0.35 TCGA-55-8620-01 1 68948023 68948023 T C DEPDC1 Missense_Mutation p.T490A 0.40 tolerated(0.28) benign(0.009) TCGA-55-8620-01 1 70504935 70504935 G T LRRC7 Missense_Mutation p.S1105I 0.25 deleterious(0.02) benign(0.11) TCGA-55-8620-01 1 70505266 70505267 CA T LRRC7 Frame_Shift_Del p.R1216Gfs*35 0.26 TCGA-55-8620-01 1 78392497 78392497 C A NEXN Silent p.R262R 0.25 TCGA-55-8620-01 1 82456488 82456488 G T LPHN2 Nonsense_Mutation p.G1291* 0.30 TCGA-55-8620-01 1 89618440 89618440 C T GBP7 Silent p.S113S 0.34 TCGA-55-8620-01 1 99771612 99771612 G T LPPR4 Missense_Mutation p.Q446H 0.28 deleterious(0) probably_damaging(0.998) TCGA-55-8620-01 20 23433343 23433343 C T CST11 Missense_Mutation p.E36K 0.69 tolerated(0.09) probably_damaging(0.913) TCGA-55-8620-01 20 3236720 3236720 G T C20orf194 Missense_Mutation p.L1065I 0.71 deleterious(0.01) possibly_damaging(0.662) TCGA-55-8620-01 20 33147533 33147556 GCTGCAGGCGCCGCCTGCAGCTGA - MAP1LC3A Splice_Site p.X72_splice 0.14 TCGA-55-8620-01 20 33879676 33879676 G T FAM83C Silent p.T144T 0.30 TCGA-55-8620-01 20 34260738 34260738 C A NFS1 Nonsense_Mutation p.E417* 0.27 TCGA-55-8620-01 20 34309758 34309758 T C RBM39 Silent p.Q243Q 0.37 TCGA-55-8620-01 20 35060092 35060092 G T DLGAP4 5'UTR 0.33 TCGA-55-8620-01 20 35422925 35422925 C A SOGA1 Missense_Mutation p.R1187L 0.29 tolerated(0.09) benign(0.009) TCGA-55-8620-01 20 36869238 36869238 G A KIAA1755 Missense_Mutation p.A432V 0.36 tolerated(0.12) benign(0.367) TCGA-55-8620-01 20 36870109 36870109 G T KIAA1755 Missense_Mutation p.P142T 0.35 tolerated(0.08) benign(0.356) TCGA-55-8620-01 20 5294818 5294818 G T PROKR2 Silent p.V66V 0.59 TCGA-55-8620-01 20 5294819 5294819 A G PROKR2 Missense_Mutation p.V66A 0.59 deleterious(0.01) benign(0.227) TCGA-55-8620-01 20 57612299 57612299 C T SLMO2 Missense_Mutation p.E80K 0.15 deleterious(0) probably_damaging(0.992) TCGA-55-8620-01 20 58587842 58587842 G T CDH26 3'UTR 0.29 TCGA-55-8620-01 20 61460278 61460278 G T COL9A3 Nonsense_Mutation p.E320* 0.33 TCGA-55-8620-01 20 62187854 62187854 A G C20orf195 Missense_Mutation p.K280E 0.39 tolerated(1) benign(0.009) TCGA-55-8620-01 20 62737572 62737572 C G NPBWR2 Missense_Mutation p.E205Q 0.32 deleterious(0.02) probably_damaging(0.974) TCGA-55-8620-01 21 19770592 19770592 C A TMPRSS15 Missense_Mutation p.G67V 0.39 deleterious(0) probably_damaging(0.999) TCGA-55-8620-01 21 30959800 30959800 G T GRIK1 Missense_Mutation p.P560H 0.32 deleterious(0) probably_damaging(0.972) TCGA-55-8620-01 21 31709664 31709664 C A KRTAP27-1 Missense_Mutation p.G108V 0.37 tolerated(1) benign(0.002) TCGA-55-8620-01 21 31971025 31971025 C A KRTAP6-2 Missense_Mutation p.G57C 0.29 unknown(0) TCGA-55-8620-01 21 34911476 34911476 C A GART Splice_Site p.X49_splice 0.34 TCGA-55-8620-01 21 45978112 45978112 G A KRTAP10-3 Missense_Mutation p.R163C 0.39 deleterious(0.03) unknown(0) TCGA-55-8620-01 21 46067215 46067215 C A KRTAP10-11 Silent p.P280P 0.21 TCGA-55-8620-01 22 16287565 16287565 G C POTEH Silent p.P107P 0.14 TCGA-55-8620-01 22 17670858 17670858 G A CECR1 Missense_Mutation p.P316S 0.75 deleterious(0.02) possibly_damaging(0.556) TCGA-55-8620-01 22 26776238 26776238 A G SEZ6L Missense_Mutation p.R1018G 0.57 deleterious(0) benign(0.211) TCGA-55-8620-01 22 29837504 29837504 C T RFPL1 Intron 0.29 TCGA-55-8620-01 22 32547534 32547534 G T C22orf42 Silent p.P135P 0.62 TCGA-55-8620-01 22 40364053 40364053 G T GRAP2 Missense_Mutation p.R156L 0.53 tolerated(0.26) benign(0.137) TCGA-55-8620-01 22 50876716 50876716 G A PPP6R2 Missense_Mutation p.M625I 0.63 tolerated(0.11) benign(0.014) TCGA-55-8620-01 2 103148966 103148966 G T SLC9A4 Missense_Mutation p.G739V 0.34 tolerated(0.25) benign(0.014) TCGA-55-8620-01 2 11727540 11727540 C T GREB1 Intron 0.31 TCGA-55-8620-01 2 118582659 118582659 G A DDX18 Silent p.L450L 0.23 TCGA-55-8620-01 2 127453719 127453719 G A GYPC 3'UTR 0.47 TCGA-55-8620-01 2 133540381 133540381 G T NCKAP5 Missense_Mutation p.L1335I 0.58 tolerated(0.06) benign(0.077) TCGA-55-8620-01 2 136562580 136562580 G T LCT Missense_Mutation p.D1407E 0.26 deleterious(0.01) possibly_damaging(0.753) TCGA-55-8620-01 2 141598619 141598619 C T LRP1B Missense_Mutation p.R1661H 0.43 possibly_damaging(0.522) TCGA-55-8620-01 2 141625345 141625345 C T LRP1B Missense_Mutation p.G1465S 0.22 benign(0.001) TCGA-55-8620-01 2 142238090 142238090 A G LRP1B Missense_Mutation p.V73A 0.34 benign(0.153) TCGA-55-8620-01 2 143790831 143790831 G T KYNU Nonsense_Mutation p.G328* 0.40 TCGA-55-8620-01 2 143790832 143790832 G A KYNU Missense_Mutation p.G328E 0.40 deleterious(0) probably_damaging(0.954) TCGA-55-8620-01 2 145156076 145156076 G - ZEB2 Frame_Shift_Del p.P893Lfs*37 0.18 TCGA-55-8620-01 2 148693089 148693089 C G ORC4 Missense_Mutation p.S434T 0.22 tolerated_low_confidence(0.13) benign(0.03) TCGA-55-8620-01 2 152112178 152112178 C G RBM43 Missense_Mutation p.S28T 0.26 tolerated(0.4) benign(0.208) TCGA-55-8620-01 2 172016855 172016855 C T TLK1 Silent p.A28A 0.26 TCGA-55-8620-01 2 173355982 173355982 A G ITGA6 Missense_Mutation p.R938G 0.20 deleterious(0.01) benign(0.06) TCGA-55-8620-01 2 178592803 178592803 C A PDE11A Missense_Mutation p.R629L 0.41 deleterious(0) probably_damaging(0.931) TCGA-55-8620-01 2 179586787 179586787 C - TTN Frame_Shift_Del p.E7535Sfs*38 0.17 TCGA-55-8620-01 2 179598224 179598224 G A TTN Nonsense_Mutation p.R5266* 0.10 TCGA-55-8620-01 2 179631139 179631139 C A TTN Missense_Mutation p.R3224S 0.17 TCGA-55-8620-01 2 185801281 185801281 C A ZNF804A Silent p.S386S 0.18 TCGA-55-8620-01 2 185802049 185802049 G C ZNF804A Missense_Mutation p.Q642H 0.21 tolerated(0.26) benign(0.001) TCGA-55-8620-01 2 185802928 185802928 A T ZNF804A Missense_Mutation p.E935D 0.20 tolerated(0.52) benign(0.025) TCGA-55-8620-01 2 187692933 187692933 G - ZSWIM2 Frame_Shift_Del p.T561Lfs*3 0.36 TCGA-55-8620-01 2 190334801 190334801 G A WDR75 Splice_Site p.X607_splice 0.17 TCGA-55-8620-01 2 190717471 190717471 A T PMS1 Missense_Mutation p.S264C 0.26 deleterious(0.05) benign(0.02) TCGA-55-8620-01 2 197183659 197183659 T A HECW2 Missense_Mutation p.Q652L 0.23 tolerated_low_confidence(0.31) benign(0.001) TCGA-55-8620-01 2 198327293 198327293 A G COQ10B Silent p.V95V 0.24 TCGA-55-8620-01 2 204571379 204571379 G T CD28 5'UTR 0.53 TCGA-55-8620-01 2 208488974 208488974 G T METTL21A Silent p.V42V 0.20 TCGA-55-8620-01 2 210561473 210561473 G T MAP2 Splice_Site p.X1463_splice 0.24 TCGA-55-8620-01 2 211469872 211469872 G T CPS1 Missense_Mutation p.G634V 0.40 deleterious(0) probably_damaging(1) TCGA-55-8620-01 2 211477012 211477012 G T CPS1 Missense_Mutation p.A861S 0.26 tolerated(0.05) possibly_damaging(0.801) TCGA-55-8620-01 2 21238243 21238243 A G APOB Silent p.Y1169Y 0.34 TCGA-55-8620-01 2 212426761 212426761 C A ERBB4 Missense_Mutation p.G785V 0.43 deleterious(0) probably_damaging(0.999) TCGA-55-8620-01 2 215866443 215866443 A G ABCA12 Missense_Mutation p.L901S 0.27 deleterious(0) probably_damaging(1) TCGA-55-8620-01 2 219609919 219609920 - C TTLL4 Frame_Shift_Ins p.T586Yfs*9 0.24 TCGA-55-8620-01 2 220309428 220309428 G T SPEG Nonsense_Mutation p.E148* 0.13 TCGA-55-8620-01 2 220370418 220370418 G T GMPPA Intron 0.22 TCGA-55-8620-01 2 24261487 24261487 T C C2orf44 Missense_Mutation p.H293R 0.38 tolerated(0.45) benign(0) TCGA-55-8620-01 2 25972747 25972747 C G ASXL2 Missense_Mutation p.D560H 0.24 deleterious(0) probably_damaging(0.928) TCGA-55-8620-01 2 26683809 26683809 C A OTOF Missense_Mutation p.V1875L 0.28 tolerated(0.48) benign(0.007) TCGA-55-8620-01 2 26697466 26697466 C - OTOF Frame_Shift_Del p.R1068Pfs*78 0.30 TCGA-55-8620-01 2 28825725 28825725 A T PLB1 Missense_Mutation p.N904I 0.23 deleterious(0.01) possibly_damaging(0.555) TCGA-55-8620-01 2 48737202 48737202 G T PPP1R21 Missense_Mutation p.A712S 0.32 tolerated(1) benign(0.003) TCGA-55-8620-01 2 49190530 49190530 A T FSHR Missense_Mutation p.L477Q 0.26 deleterious(0) probably_damaging(0.975) TCGA-55-8620-01 2 50280729 50280729 C A NRXN1 Splice_Site p.X1310_splice 0.31 TCGA-55-8620-01 2 61622137 61622137 C G USP34 Missense_Mutation p.D202H 0.23 deleterious(0) probably_damaging(0.994) TCGA-55-8620-01 2 63280083 63280083 G T OTX1 5'UTR 0.29 TCGA-55-8620-01 2 66794614 66794614 A T MEIS1 Missense_Mutation p.Q332L 0.35 deleterious(0) possibly_damaging(0.486) TCGA-55-8620-01 2 71429701 71429701 C A PAIP2B Missense_Mutation p.A7S 0.32 tolerated(0.7) benign(0.004) TCGA-55-8620-01 2 71827933 71827933 G T DYSF Silent p.G1286G 0.26 TCGA-55-8620-01 2 77745948 77745948 C A LRRTM4 Missense_Mutation p.K349N 0.25 tolerated(0.39) possibly_damaging(0.848) TCGA-55-8620-01 2 79364024 79364024 G T REG1P RNA 0.26 TCGA-55-8620-01 2 80136825 80136825 T A CTNNA2 Missense_Mutation p.S320T 0.25 deleterious(0.05) probably_damaging(0.933) TCGA-55-8620-01 2 80529422 80529422 C A LRRTM1 Missense_Mutation p.G508V 0.35 deleterious(0.03) probably_damaging(0.998) TCGA-55-8620-01 2 80808891 80808891 A C CTNNA2 Silent p.R652R 0.24 TCGA-55-8620-01 2 85785696 85785696 G A GGCX Missense_Mutation p.R136W 0.23 deleterious(0) probably_damaging(1) TCGA-55-8620-01 2 89247003 89247003 G A IGKV1-5 Missense_Mutation p.A56V 0.34 tolerated(0.15) benign(0.03) TCGA-55-8620-01 2 90108550 90108550 C T IGKV6D-41 Silent p.F7F 0.22 TCGA-55-8620-01 3 10379906 10379906 C T ATP2B2 Missense_Mutation p.R1125Q 0.29 deleterious(0.01) probably_damaging(0.99) TCGA-55-8620-01 3 110852781 110852781 G T PVRL3 Missense_Mutation p.V457F 0.22 deleterious(0.04) possibly_damaging(0.796) TCGA-55-8620-01 3 121774340 121774340 G A CD86 Missense_Mutation p.D2N 0.40 tolerated_low_confidence(0.31) possibly_damaging(0.514) TCGA-55-8620-01 3 12209919 12209919 C A SYN2 RNA 0.38 TCGA-55-8620-01 3 123008597 123008597 C A ADCY5 Missense_Mutation p.G1178W 0.41 deleterious(0) probably_damaging(1) TCGA-55-8620-01 3 12434233 12434233 G C PPARG Missense_Mutation p.V201L 0.18 tolerated(0.23) probably_damaging(0.97) TCGA-55-8620-01 3 124386013 124386013 A T KALRN Missense_Mutation p.Q320L 0.45 deleterious(0.01) probably_damaging(0.928) TCGA-55-8620-01 3 125271280 125271280 C T OSBPL11 Missense_Mutation p.E467K 0.36 tolerated(0.95) benign(0.004) TCGA-55-8620-01 3 127806630 127806630 G A RUVBL1 Silent p.S346S 0.41 TCGA-55-8620-01 3 128060617 128060617 G T EEFSEC Missense_Mutation p.R443L 0.06 deleterious(0) probably_damaging(1) TCGA-55-8620-01 3 129286351 129286351 C A PLXND1 Missense_Mutation p.R1357L 0.36 deleterious(0) probably_damaging(1) TCGA-55-8620-01 3 129695784 129695784 C A TRH Missense_Mutation p.Q152K 0.32 deleterious(0) probably_damaging(1) TCGA-55-8620-01 3 130285926 130285926 G T COL6A6 Nonsense_Mutation p.E555* 0.26 TCGA-55-8620-01 3 133485258 133485258 G C TF Missense_Mutation p.K489N 0.23 tolerated(0.05) benign(0.042) TCGA-55-8620-01 3 13896089 13896089 C T WNT7A Silent p.R170R 0.27 TCGA-55-8620-01 3 140401368 140401368 G A TRIM42 Missense_Mutation p.A136T 0.34 tolerated(0.33) benign(0.001) TCGA-55-8620-01 3 14199885 14199885 C G XPC Missense_Mutation p.A500P 0.30 tolerated(0.08) benign(0.073) TCGA-55-8620-01 3 142272702 142272702 C A ATR Nonsense_Mutation p.E833* 0.37 TCGA-55-8620-01 3 1424653 1424653 G T CNTN6 Nonsense_Mutation p.E732* 0.39 TCGA-55-8620-01 3 147131162 147131162 G A ZIC1 Missense_Mutation p.G390S 0.44 tolerated(0.19) benign(0.063) TCGA-55-8620-01 3 14861521 14861521 C A FGD5 Missense_Mutation p.H315N 0.25 tolerated(0.42) benign(0.009) TCGA-55-8620-01 3 14861903 14861903 C A FGD5 Missense_Mutation p.P442H 0.25 tolerated_low_confidence(0.54) possibly_damaging(0.87) TCGA-55-8620-01 3 150881802 150881802 G T MED12L Silent p.P410P 0.17 TCGA-55-8620-01 3 151105748 151105748 T C MED12L Missense_Mutation p.Y1712H 0.25 tolerated(0.12) benign(0.021) TCGA-55-8620-01 3 167512563 167512563 G A SERPINI1 Missense_Mutation p.E278K 0.24 tolerated(0.68) probably_damaging(0.921) TCGA-55-8620-01 3 175293901 175293901 G C NAALADL2 Missense_Mutation p.D576H 0.25 deleterious(0) probably_damaging(1) TCGA-55-8620-01 3 183754233 183754233 C T HTR3D Nonsense_Mutation p.Q151* 0.43 TCGA-55-8620-01 3 186015219 186015219 G T DGKG Missense_Mutation p.P122T 0.41 deleterious(0.03) benign(0.371) TCGA-55-8620-01 3 195516040 195516040 G T MUC4 Missense_Mutation p.T804N 0.16 unknown(0) TCGA-55-8620-01 3 44955422 44955422 A G TGM4 3'UTR 0.30 TCGA-55-8620-01 3 46245637 46245637 G C CCR1 Silent p.V56V 0.16 TCGA-55-8620-01 3 47042584 47042584 C T NBEAL2 Missense_Mutation p.R1467W 0.14 deleterious(0.03) possibly_damaging(0.856) TCGA-55-8620-01 3 48726095 48726096 - C IP6K2 Frame_Shift_Ins p.Y298Vfs*5 0.17 TCGA-55-8620-01 3 49690204 49690204 G T BSN Missense_Mutation p.R1072L 0.29 unknown(0) TCGA-55-8620-01 3 49936631 49936631 G A MST1R Silent p.S432S 0.24 TCGA-55-8620-01 3 50431585 50431585 A C CACNA2D2 Silent p.A140A 0.11 TCGA-55-8620-01 3 52568755 52568755 G A NT5DC2 5'Flank 0.43 TCGA-55-8620-01 3 53880624 53880624 C T IL17RB Silent p.L3L 0.38 TCGA-55-8620-01 3 54604086 54604086 C G CACNA2D3 Silent p.S281S 0.33 TCGA-55-8620-01 3 57132511 57132511 C T IL17RD Nonsense_Mutation p.W407* 0.19 TCGA-55-8620-01 3 7620249 7620249 G C GRM7 Missense_Mutation p.Q552H 0.26 tolerated(0.18) possibly_damaging(0.622) TCGA-55-8620-01 3 77526582 77526582 C G ROBO2 Missense_Mutation p.R152G 0.19 deleterious(0) possibly_damaging(0.608) TCGA-55-8620-01 3 8661639 8661639 T C SSUH2 Missense_Mutation p.Y348C 0.19 deleterious(0.02) possibly_damaging(0.698) TCGA-55-8620-01 3 8661662 8661662 G C SSUH2 Missense_Mutation p.H340Q 0.24 tolerated(0.06) benign(0.086) TCGA-55-8620-01 3 9792036 9792036 G A OGG1 Silent p.L22L 0.53 TCGA-55-8620-01 4 110624529 110624529 C G CASP6 Missense_Mutation p.R8P 0.30 deleterious_low_confidence(0.04) benign(0) TCGA-55-8620-01 4 123151275 123151275 A - KIAA1109 Frame_Shift_Del p.I1078Lfs*7 0.41 TCGA-55-8620-01 4 126373597 126373597 G T FAT4 Missense_Mutation p.G3809V 0.57 benign(0.101) TCGA-55-8620-01 4 142641641 142641641 T C IL15 Missense_Mutation p.I11T 0.65 tolerated(1) benign(0) TCGA-55-8620-01 4 162459429 162459429 T A FSTL5 Missense_Mutation p.S401C 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-55-8620-01 4 17510915 17510915 C A QDPR Silent p.S59S 0.59 TCGA-55-8620-01 4 22737821 22737821 C T GBA3 Silent p.I92I 0.52 TCGA-55-8620-01 4 30732500 30732500 G T PCDH7 Intron 0.60 TCGA-55-8620-01 4 41749523 41749523 C T PHOX2B Missense_Mutation p.G91D 0.48 deleterious(0.02) probably_damaging(0.998) TCGA-55-8620-01 4 533125 533125 G T PIGG Silent p.T973T 0.54 TCGA-55-8620-01 4 55971998 55971998 C G KDR Splice_Site p.X549_splice 0.33 TCGA-55-8620-01 4 56262446 56262446 G T TMEM165 Silent p.A30A 0.44 TCGA-55-8620-01 4 56734528 56734528 A G EXOC1 Missense_Mutation p.S148G 0.55 tolerated(0.35) benign(0.001) TCGA-55-8620-01 4 6303292 6303292 G A WFS1 Silent p.T590T 0.54 TCGA-55-8620-01 4 6377594 6377594 C A PPP2R2C Missense_Mutation p.K133N 0.21 tolerated(0.2) benign(0.21) TCGA-55-8620-01 4 65274863 65274863 T G TECRL Silent p.T69T 0.15 TCGA-55-8620-01 4 70156355 70156355 G T UGT2B28 Missense_Mutation p.G379V 0.59 deleterious(0.01) probably_damaging(0.998) TCGA-55-8620-01 4 71500168 71500168 G T ENAM Missense_Mutation p.Q118H 0.62 deleterious(0) possibly_damaging(0.891) TCGA-55-8620-01 4 87655902 87655902 G A PTPN13 Silent p.T675T 0.14 TCGA-55-8620-01 4 88415300 88415300 G T SPARCL1 Missense_Mutation p.Q218K 0.59 tolerated(0.06) benign(0.02) TCGA-55-8620-01 4 89199348 89199348 C A PPM1K Missense_Mutation p.G130C 0.61 deleterious(0) probably_damaging(1) TCGA-55-8620-01 4 94436510 94436510 G T GRID2 Missense_Mutation p.R714L 0.64 tolerated(0.05) benign(0.429) TCGA-55-8620-01 5 122909156 122909156 G T CSNK1G3 Missense_Mutation p.G120V 0.56 deleterious(0) probably_damaging(0.995) TCGA-55-8620-01 5 134007564 134007564 G T SEC24A Missense_Mutation p.G269C 0.23 deleterious(0) possibly_damaging(0.895) TCGA-55-8620-01 5 137727644 137727644 G A KDM3B Missense_Mutation p.G775S 0.22 tolerated_low_confidence(0.32) benign(0.001) TCGA-55-8620-01 5 140051034 140051034 G A DND1 Silent p.S302S 0.19 TCGA-55-8620-01 5 140475149 140475149 G T PCDHB2 Missense_Mutation p.V259F 0.60 deleterious_low_confidence(0) possibly_damaging(0.806) TCGA-55-8620-01 5 140558329 140558329 T A PCDHB8 Missense_Mutation p.D238E 0.20 deleterious_low_confidence(0) possibly_damaging(0.618) TCGA-55-8620-01 5 148712329 148712329 C A AFAP1L1 Silent p.R683R 0.59 TCGA-55-8620-01 5 149452878 149452878 G A CSF1R Silent p.T356T 0.46 TCGA-55-8620-01 5 156810290 156810290 G T CYFIP2 Missense_Mutation p.V1018F 0.34 tolerated(0.06) benign(0.009) TCGA-55-8620-01 5 15936990 15936990 G A FBXL7 Missense_Mutation p.D391N 0.41 tolerated(0.06) probably_damaging(0.999) TCGA-55-8620-01 5 168671774 168671774 C A SLIT3 Silent p.L92L 0.55 TCGA-55-8620-01 5 171523435 171523435 C T STK10 Missense_Mutation p.A334T 0.08 tolerated(0.5) benign(0.002) TCGA-55-8620-01 5 178413735 178413735 G T GRM6 Missense_Mutation p.S507Y 0.26 deleterious(0) benign(0.163) TCGA-55-8620-01 5 21755738 21755738 G T CDH12 Missense_Mutation p.A616E 0.39 deleterious(0) probably_damaging(0.998) TCGA-55-8620-01 5 226088 226088 G A SDHA Missense_Mutation p.G183S 0.21 deleterious_low_confidence(0) possibly_damaging(0.707) TCGA-55-8620-01 5 23509632 23509632 A T PRDM9 Silent p.A41A 0.43 TCGA-55-8620-01 5 23509633 23509633 G T PRDM9 Nonsense_Mutation p.E42* 0.43 TCGA-55-8620-01 5 35065400 35065400 C G PRLR Missense_Mutation p.D554H 0.20 deleterious(0.01) possibly_damaging(0.907) TCGA-55-8620-01 5 39119121 39119121 T C FYB Silent p.R762R 0.18 TCGA-55-8620-01 5 7789871 7789871 G A ADCY2 Silent p.A862A 0.29 TCGA-55-8620-01 5 82789453 82789453 C A VCAN Silent p.V178V 0.47 TCGA-55-8620-01 5 94207047 94207047 C A MCTP1 Silent p.L704L 0.51 TCGA-55-8620-01 6 102483431 102483431 C A GRIK2 Silent p.G767G 0.24 TCGA-55-8620-01 6 109691614 109691614 C G CD164 Missense_Mutation p.G143R 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-55-8620-01 6 111498669 111498669 G A SLC16A10 Missense_Mutation p.G248D 0.38 deleterious(0) probably_damaging(0.928) TCGA-55-8620-01 6 117746865 117746865 C A ROS1 5'UTR 0.12 TCGA-55-8620-01 6 125232287 125232287 C T RP11-510H23.1 RNA 0.14 TCGA-55-8620-01 6 128316654 128316654 C A PTPRK Missense_Mutation p.V933L 0.14 tolerated(1) benign(0.003) TCGA-55-8620-01 6 130762993 130762993 G A TMEM200A Missense_Mutation p.E476K 0.56 deleterious(0.01) probably_damaging(0.994) TCGA-55-8620-01 6 132891469 132891469 C A TAAR6 Missense_Mutation p.S3R 0.23 deleterious(0.05) benign(0.019) TCGA-55-8620-01 6 142396983 142396983 G T NMBR Nonsense_Mutation p.Y325* 0.24 TCGA-55-8620-01 6 144263090 144263090 G A PLAGL1 Missense_Mutation p.S288L 0.12 tolerated(0.28) benign(0.002) TCGA-55-8620-01 6 155749970 155749970 C A NOX3 Missense_Mutation p.G368V 0.22 deleterious(0.05) probably_damaging(0.97) TCGA-55-8620-01 6 155764528 155764528 A T NOX3 Missense_Mutation p.F122Y 0.12 tolerated(0.08) benign(0.006) TCGA-55-8620-01 6 157528039 157528046 GAGCCCAG - ARID1B Frame_Shift_Del p.S1925Rfs*16 0.48 TCGA-55-8620-01 6 161021994 161021994 G T LPA Missense_Mutation p.P1028T 0.22 deleterious_low_confidence(0.03) probably_damaging(0.946) TCGA-55-8620-01 6 161134115 161134115 C G PLG Missense_Mutation p.P169A 0.41 deleterious(0.04) benign(0.141) TCGA-55-8620-01 6 25917309 25917309 G T SLC17A2 Missense_Mutation p.T219N 0.20 deleterious(0.03) benign(0.124) TCGA-55-8620-01 6 26197386 26197386 T A HIST1H3D Silent p.P31P 0.45 TCGA-55-8620-01 6 28500102 28500102 G T GPX5 Missense_Mutation p.V122F 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-8620-01 6 28554168 28554168 C T SCAND3 Silent p.Q109Q 0.15 TCGA-55-8620-01 6 29913319 29913319 A G HLA-A 3'UTR 0.48 TCGA-55-8620-01 6 30640597 30640597 C A DHX16 Nonsense_Mutation p.E8* 0.25 TCGA-55-8620-01 6 38875884 38875884 C G DNAH8 Silent p.L2950L 0.43 TCGA-55-8620-01 6 42141446 42141446 G A GUCA1A Missense_Mutation p.G32D 0.27 deleterious(0) probably_damaging(1) TCGA-55-8620-01 6 43415472 43415472 G A ABCC10 Silent p.V1252V 0.16 TCGA-55-8620-01 6 49803156 49803156 G A CRISP1 Missense_Mutation p.T208I 0.39 deleterious(0) probably_damaging(0.986) TCGA-55-8620-01 6 49976889 49976889 C A DEFB110 Nonsense_Mutation p.G51* 0.24 TCGA-55-8620-01 6 52138553 52138553 C A MCM3 Missense_Mutation p.E557D 0.15 tolerated(0.28) benign(0.366) TCGA-55-8620-01 6 64395426 64395426 C G PHF3 Missense_Mutation p.H601Q 0.38 tolerated(0.53) benign(0.005) TCGA-55-8620-01 6 66204951 66204951 G C EYS Missense_Mutation p.T118S 0.45 tolerated_low_confidence(0.29) possibly_damaging(0.833) TCGA-55-8620-01 6 70049355 70049355 G T BAI3 Missense_Mutation p.G1140C 0.43 deleterious(0) probably_damaging(0.964) TCGA-55-8620-01 6 70852685 70852685 G T COL19A1 Missense_Mutation p.M533I 0.37 tolerated(0.27) benign(0.296) TCGA-55-8620-01 6 70859924 70859924 C A COL19A1 Missense_Mutation p.P675H 0.18 deleterious(0) probably_damaging(1) TCGA-55-8620-01 6 84645953 84645953 A T CYB5R4 Silent p.I322I 0.42 TCGA-55-8620-01 6 87966692 87966692 T C ZNF292 Silent p.I1115I 0.18 TCGA-55-8620-01 6 88773815 88773815 A G SPACA1 Splice_Site p.X204_splice 0.41 TCGA-55-8620-01 7 100676143 100676143 G T MUC17 Missense_Mutation p.Q482H 0.70 benign(0.044) TCGA-55-8620-01 7 123594318 123594318 C A SPAM1 Missense_Mutation p.P232T 0.59 tolerated(0.06) benign(0.411) TCGA-55-8620-01 7 149519178 149519178 G T SSPO RNA 0.84 TCGA-55-8620-01 7 151970865 151970865 C T KMT2C Missense_Mutation p.G313R 0.05 probably_damaging(1) TCGA-55-8620-01 7 18688284 18688284 A T HDAC9 Missense_Mutation p.Q482L 0.56 tolerated(0.36) probably_damaging(0.996) TCGA-55-8620-01 7 31617511 31617511 G T CCDC129 Silent p.V237V 0.07 TCGA-55-8620-01 7 34818137 34818137 C A NPSR1 Missense_Mutation p.T115K 0.44 tolerated(0.29) benign(0.003) TCGA-55-8620-01 7 38431616 38431616 C A AMPH Missense_Mutation p.E537D 0.54 deleterious(0.05) benign(0.165) TCGA-55-8620-01 7 44146464 44146464 C T AEBP1 Silent p.P191P 0.18 TCGA-55-8620-01 7 57522169 57522169 C A ZNF716 Missense_Mutation p.L15M 0.59 tolerated(0.22) probably_damaging(0.948) TCGA-55-8620-01 7 5792597 5792597 G A RNF216 Silent p.L27L 0.18 TCGA-55-8620-01 7 62758769 62758769 C G ZNF733P Intron 0.14 TCGA-55-8620-01 7 64168707 64168707 A T ZNF107 Silent p.L675L 0.67 TCGA-55-8620-01 7 7612758 7612758 C T MIOS Nonsense_Mutation p.Q218* 0.57 TCGA-55-8620-01 7 83610795 83610795 C A SEMA3A Splice_Site p.X499_splice 0.61 TCGA-55-8620-01 7 86991146 86991146 C T CROT Silent p.S203S 0.64 TCGA-55-8620-01 7 99359685 99359685 G A CYP3A4 Missense_Mutation p.P411L 0.48 deleterious(0.01) probably_damaging(1) TCGA-55-8620-01 7 99473753 99473753 T C OR2AE1 Missense_Mutation p.R302G 0.69 deleterious(0.03) benign(0.008) TCGA-55-8620-01 7 99758302 99758302 G T GAL3ST4 Missense_Mutation p.P237H 0.69 deleterious(0.02) benign(0.285) TCGA-55-8620-01 7 99801709 99801709 T C STAG3 Silent p.S922S 0.05 TCGA-55-8620-01 8 101153824 101153824 T A FBXO43 Missense_Mutation p.S220C 0.42 tolerated(0.41) benign(0.006) TCGA-55-8620-01 8 10470429 10470429 T - RP1L1 Frame_Shift_Del p.V394Sfs*96 0.34 TCGA-55-8620-01 8 104987670 104987670 C A RIMS2 Missense_Mutation p.P955T 0.27 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-55-8620-01 8 104987671 104987671 C A RIMS2 Missense_Mutation p.P955H 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-55-8620-01 8 105105853 105105853 G C RIMS2 Intron 0.21 TCGA-55-8620-01 8 108913337 108913337 C A RSPO2 Missense_Mutation p.S233I 0.36 deleterious(0.03) probably_damaging(0.994) TCGA-55-8620-01 8 110457743 110457743 G T PKHD1L1 Missense_Mutation p.C1882F 0.34 deleterious(0) possibly_damaging(0.838) TCGA-55-8620-01 8 118159308 118159308 G A SLC30A8 Missense_Mutation p.G63R 0.31 tolerated(1) benign(0) TCGA-55-8620-01 8 11995482 11995482 G T USP17L2 Missense_Mutation p.A263D 0.36 deleterious(0) probably_damaging(1) TCGA-55-8620-01 8 124818329 124818329 G T FAM91A1 Missense_Mutation p.R631L 0.39 tolerated(0.5) benign(0.004) TCGA-55-8620-01 8 133900353 133900353 G T TG Silent p.G767G 0.33 TCGA-55-8620-01 8 139614393 139614393 C T COL22A1 Missense_Mutation p.G1384R 0.09 unknown(0) TCGA-55-8620-01 8 139674293 139674293 G T COL22A1 Missense_Mutation p.Q1074K 0.38 unknown(0) TCGA-55-8620-01 8 143747159 143747159 C A JRK RNA 0.29 TCGA-55-8620-01 8 144998189 144998189 C G PLEC Missense_Mutation p.A2107P 0.39 unknown(0) TCGA-55-8620-01 8 1497732 1497732 G T DLGAP2 Missense_Mutation p.W291C 0.47 deleterious(0.03) probably_damaging(0.999) TCGA-55-8620-01 8 1774289 1774289 G C ARHGEF10 Intron 0.48 TCGA-55-8620-01 8 30702133 30702133 C A TEX15 Silent p.A1467A 0.33 TCGA-55-8620-01 8 37734787 37734787 C T RAB11FIP1 Silent p.K218K 0.20 TCGA-55-8620-01 8 38285498 38285498 G A FGFR1 Silent p.L219L 0.44 TCGA-55-8620-01 8 57026325 57026325 A T MOS Missense_Mutation p.S73T 0.43 tolerated(0.1) probably_damaging(0.932) TCGA-55-8620-01 8 6296558 6296558 G C MCPH1 Missense_Mutation p.S174T 0.45 tolerated(0.09) probably_damaging(0.953) TCGA-55-8620-01 8 65494522 65494522 C A BHLHE22 3'UTR 0.33 TCGA-55-8620-01 8 95523724 95523724 C G KIAA1429 Missense_Mutation p.E1027Q 0.33 tolerated(0.99) benign(0.033) TCGA-55-8620-01 9 100616544 100616544 C T FOXE1 Silent p.R116R 0.19 TCGA-55-8620-01 9 101817563 101817563 G A COL15A1 Missense_Mutation p.G1034E 0.24 deleterious(0) probably_damaging(0.998) TCGA-55-8620-01 9 102691066 102691066 A T STX17 Missense_Mutation p.R44W 0.45 deleterious(0) probably_damaging(0.963) TCGA-55-8620-01 9 114467646 114467646 T G C9orf84 Splice_Site p.X849_splice 0.51 TCGA-55-8620-01 9 119739053 119739053 A T ASTN2 Missense_Mutation p.C484S 0.43 deleterious(0) unknown(0) TCGA-55-8620-01 9 125288942 125288942 A G OR1N1 Missense_Mutation p.C211R 0.11 deleterious(0.03) possibly_damaging(0.826) TCGA-55-8620-01 9 128722999 128722999 A T PBX3 Nonsense_Mutation p.K294* 0.43 TCGA-55-8620-01 9 129453232 129453232 G T LMX1B Silent p.R148R 0.48 TCGA-55-8620-01 9 130119537 130119537 G A GARNL3 Missense_Mutation p.V659M 0.54 deleterious(0.04) probably_damaging(1) TCGA-55-8620-01 9 131004517 131004517 C G DNM1 Missense_Mutation p.R522G 0.24 deleterious(0.01) probably_damaging(0.99) TCGA-55-8620-01 9 131851367 131851367 G A DOLPP1 3'UTR 0.10 TCGA-55-8620-01 9 13192130 13192130 C A MPDZ Missense_Mutation p.K656N 0.29 tolerated(0.11) possibly_damaging(0.804) TCGA-55-8620-01 9 133573562 133573562 G T EXOSC2 Missense_Mutation p.R95M 0.28 deleterious(0) possibly_damaging(0.883) TCGA-55-8620-01 9 134351245 134351245 C T PRRC2B Silent p.D1243D 0.45 TCGA-55-8620-01 9 135523934 135523934 G A DDX31 Missense_Mutation p.R354C 0.26 deleterious(0) probably_damaging(1) TCGA-55-8620-01 9 136599098 136599098 C T SARDH Silent p.T66T 0.29 TCGA-55-8620-01 9 138825299 138825299 C A UBAC1 Missense_Mutation p.G389W 0.43 deleterious(0) probably_damaging(1) TCGA-55-8620-01 9 139873752 139873752 G T PTGDS Splice_Site p.X111_splice 0.53 TCGA-55-8620-01 9 140129078 140129078 G C SLC34A3 Silent p.L410L 0.29 TCGA-55-8620-01 9 22008863 22008863 C T CDKN2B Silent p.V30V 0.32 TCGA-55-8620-01 9 33470045 33470045 C T NOL6 Missense_Mutation p.D175N 0.47 tolerated(0.38) benign(0.004) TCGA-55-8620-01 9 33675702 33675702 T A PTENP1 RNA 0.31 TCGA-55-8620-01 9 65506687 65506687 G T SPATA31A7 Nonsense_Mutation p.C291* 0.40 TCGA-55-8620-01 9 73240166 73240166 A T TRPM3 Missense_Mutation p.C572S 0.32 tolerated(0.69) probably_damaging(0.995) TCGA-55-8620-01 9 86354591 86354591 T A GKAP1 3'UTR 0.18 TCGA-55-8620-01 9 95219656 95219656 G T ASPN Missense_Mutation p.P353T 0.20 deleterious(0) possibly_damaging(0.875) TCGA-55-8620-01 9 97329552 97329552 C A FBP2 Missense_Mutation p.E235D 0.45 tolerated(0.11) benign(0.056) TCGA-55-8620-01 X 107437788 107437788 C T COL4A6 Silent p.G327G 0.39 TCGA-55-8620-01 X 120181615 120181615 C A GLUD2 Nonsense_Mutation p.S26* 0.81 TCGA-55-8620-01 X 125686198 125686198 G T DCAF12L1 Missense_Mutation p.R132S 0.60 deleterious(0.03) possibly_damaging(0.587) TCGA-55-8620-01 X 125686488 125686488 C T DCAF12L1 Missense_Mutation p.G35E 0.62 tolerated(0.2) benign(0.172) TCGA-55-8620-01 X 135574444 135574444 G T BRS3 Silent p.T370T 0.73 TCGA-55-8620-01 X 142717684 142717684 G T SLITRK4 Missense_Mutation p.T414K 0.15 deleterious(0.02) benign(0.01) TCGA-55-8620-01 X 151870219 151870219 C A MAGEA6 Silent p.L303L 0.68 TCGA-55-8620-01 X 152710396 152710396 G A TREX2 Missense_Mutation p.R165W 0.78 deleterious(0.03) possibly_damaging(0.767) TCGA-55-8620-01 X 152818635 152818635 G T ATP2B3 Missense_Mutation p.G656C 0.78 deleterious(0.01) possibly_damaging(0.684) TCGA-55-8620-01 X 155235122 155235122 C G IL9R Missense_Mutation p.C253W 0.59 tolerated(0.18) possibly_damaging(0.594) TCGA-55-8620-01 X 23704416 23704416 A C PRDX4 Silent p.P260P 0.71 TCGA-55-8620-01 X 3241897 3241897 C G MXRA5 Missense_Mutation p.S610T 0.72 deleterious(0.05) possibly_damaging(0.521) TCGA-55-8620-01 X 37850253 37850253 T A CXorf27 Missense_Mutation p.L54H 0.67 deleterious(0) possibly_damaging(0.815) TCGA-55-8620-01 X 41069770 41069770 G T USP9X Missense_Mutation p.G1675V 0.54 deleterious(0) probably_damaging(0.99) TCGA-55-8620-01 X 47006760 47006760 C T RBM10 5'UTR 0.55 TCGA-55-8620-01 X 47044595 47044595 G T RBM10 Nonsense_Mutation p.E698* 0.59 TCGA-55-8620-01 X 48826303 48826303 C AG KCND1 Frame_Shift_Ins p.E126Lfs*5 0.43 TCGA-55-8620-01 X 49957131 49957131 C A AKAP4 Missense_Mutation p.G745C 0.68 deleterious(0) possibly_damaging(0.813) TCGA-55-8620-01 X 53244010 53244010 C A KDM5C Missense_Mutation p.R328L 0.81 tolerated(0.75) possibly_damaging(0.839) TCGA-55-8620-01 X 53571684 53571684 C G HUWE1 Missense_Mutation p.Q3696H 0.65 unknown(0) TCGA-55-8620-01 X 57407423 57407423 G T FAAH2 Missense_Mutation p.M319I 0.74 tolerated(0.34) benign(0.001) TCGA-55-8620-01 X 70146820 70146820 G A SLC7A3 Missense_Mutation p.S453L 0.46 tolerated(0.27) benign(0) TCGA-55-8620-01 X 73045871 73045871 G A XIST RNA 0.73 TCGA-55-8620-01 X 7811659 7811659 G T VCX Missense_Mutation p.G75C 0.42 deleterious(0) unknown(0) TCGA-55-8621-01 10 100904138 100904138 A G HPSE2 Missense_Mutation p.V156A 0.04 tolerated(0.17) benign(0.007) TCGA-55-8621-01 10 114905802 114905802 G C TCF7L2 Missense_Mutation p.G274A 0.07 tolerated(0.15) probably_damaging(0.999) TCGA-55-8621-01 10 27499832 27499832 C T ACBD5 Missense_Mutation p.G372E 0.04 deleterious(0) probably_damaging(1) TCGA-55-8621-01 11 110036057 110036057 C T ZC3H12C Silent p.D749D 0.04 TCGA-55-8621-01 11 120351073 120351073 G C ARHGEF12 Missense_Mutation p.E1391Q 0.03 deleterious_low_confidence(0.01) benign(0.208) TCGA-55-8621-01 11 64084290 64084292 AAA - TRMT112 3'UTR 0.09 TCGA-55-8621-01 12 10168267 10168267 A T CLEC12B Silent p.S207S 0.06 TCGA-55-8621-01 12 94975606 94975606 C A TMCC3 Missense_Mutation p.G263C 0.07 deleterious(0) probably_damaging(0.972) TCGA-55-8621-01 15 69721517 69721517 G A KIF23 Missense_Mutation p.R346Q 0.09 deleterious(0) probably_damaging(1) TCGA-55-8621-01 15 75013024 75013024 T A CYP1A1 Missense_Mutation p.I449F 0.04 deleterious(0) benign(0.392) TCGA-55-8621-01 16 27781322 27781322 G T KIAA0556 Silent p.L1372L 0.07 TCGA-55-8621-01 16 67221314 67221314 A G EXOC3L1 Missense_Mutation p.V285A 0.11 tolerated(1) benign(0.002) TCGA-55-8621-01 17 29652837 29652837 G T NF1 Splice_Site p.X1612_splice 0.05 TCGA-55-8621-01 17 4088277 4088277 T A ANKFY1 Missense_Mutation p.Q554L 0.07 tolerated(0.15) benign(0.06) TCGA-55-8621-01 17 4088278 4088278 G T ANKFY1 Missense_Mutation p.Q554K 0.07 tolerated(0.53) benign(0.098) TCGA-55-8621-01 17 5126671 5126671 C A SCIMP Silent p.L34L 0.06 TCGA-55-8621-01 17 66521990 66521990 C G PRKAR1A Silent p.V215V 0.16 TCGA-55-8621-01 17 72832365 72832365 C T TMEM104 Missense_Mutation p.R344C 0.13 deleterious(0.05) possibly_damaging(0.51) TCGA-55-8621-01 17 8167823 8167823 G T PFAS Missense_Mutation p.Q651H 0.05 tolerated(0.07) benign(0.001) TCGA-55-8621-01 19 22256355 22256355 C A ZNF257 Missense_Mutation p.A72D 0.04 tolerated(0.27) benign(0.006) TCGA-55-8621-01 19 34981339 34981339 G T WTIP Missense_Mutation p.M242I 0.07 deleterious(0) probably_damaging(0.977) TCGA-55-8621-01 19 43372245 43372245 C A PSG1 Missense_Mutation p.W417C 0.05 deleterious(0.02) benign(0.002) TCGA-55-8621-01 19 51628560 51628560 G A SIGLEC9 Missense_Mutation p.R110K 0.04 tolerated(0.14) benign(0.098) TCGA-55-8621-01 19 53572139 53572139 A C ZNF160 Missense_Mutation p.S550A 0.05 tolerated(0.16) possibly_damaging(0.661) TCGA-55-8621-01 1 114515929 114515929 C T HIPK1 Missense_Mutation p.A1143V 0.04 tolerated(0.78) benign(0.001) TCGA-55-8621-01 1 1290366 1290366 C G MXRA8 Silent p.P215P 0.17 TCGA-55-8621-01 1 1323337 1323337 T C CCNL2 Missense_Mutation p.N372S 0.06 tolerated(0.07) possibly_damaging(0.505) TCGA-55-8621-01 1 147126372 147126372 C A ACP6 Missense_Mutation p.M239I 0.03 deleterious(0.04) benign(0.012) TCGA-55-8621-01 1 151288608 151288608 C G PI4KB Missense_Mutation p.R129T 0.06 tolerated(0.13) benign(0.019) TCGA-55-8621-01 1 152732834 152732834 C T KPRP Missense_Mutation p.P257L 0.07 deleterious(0.04) possibly_damaging(0.851) TCGA-55-8621-01 1 152785166 152785166 C T LCE1B Missense_Mutation p.R82C 0.05 tolerated_low_confidence(0.14) unknown(0) TCGA-55-8621-01 1 215259840 215259840 G T KCNK2 Missense_Mutation p.W59L 0.14 tolerated(0.14) possibly_damaging(0.584) TCGA-55-8621-01 1 222802408 222802408 G T MIA3 Nonsense_Mutation p.E616* 0.05 TCGA-55-8621-01 1 238053848 238053848 T A ZP4 Missense_Mutation p.S30C 0.10 deleterious(0.01) possibly_damaging(0.784) TCGA-55-8621-01 1 23885821 23885821 C A ID3 Missense_Mutation p.A33S 0.08 tolerated(0.56) benign(0.006) TCGA-55-8621-01 1 241680549 241680549 T G FH Missense_Mutation p.Y67S 0.08 deleterious(0) probably_damaging(0.986) TCGA-55-8621-01 1 46747043 46747043 T C LRRC41 Missense_Mutation p.I504V 0.08 deleterious(0.03) benign(0.068) TCGA-55-8621-01 20 20258003 20258003 G C C20orf26 Silent p.R899R 0.07 TCGA-55-8621-01 20 20269545 20269545 G T C20orf26 Missense_Mutation p.R1030L 0.21 tolerated(0.06) benign(0.082) TCGA-55-8621-01 20 43058210 43058210 G A HNF4A Missense_Mutation p.E444K 0.04 deleterious_low_confidence(0) benign(0.345) TCGA-55-8621-01 20 52198700 52198700 G T ZNF217 Silent p.G222G 0.06 TCGA-55-8621-01 20 8713907 8713907 G A PLCB1 Missense_Mutation p.M637I 0.07 deleterious(0.03) benign(0.051) TCGA-55-8621-01 21 15481274 15481274 A C LIPI 3'UTR 0.06 TCGA-55-8621-01 2 137814488 137814488 G T THSD7B Missense_Mutation p.G213V 0.04 deleterious(0) probably_damaging(0.996) TCGA-55-8621-01 2 140992398 140992398 G T LRP1B Missense_Mutation p.P4539H 0.06 possibly_damaging(0.893) TCGA-55-8621-01 2 183616853 183616853 C T DNAJC10 Missense_Mutation p.L497F 0.04 tolerated(0.17) probably_damaging(1) TCGA-55-8621-01 2 196673453 196673453 C A DNAH7 Nonsense_Mutation p.E3346* 0.04 TCGA-55-8621-01 2 211464240 211464240 G C CPS1 Missense_Mutation p.D508H 0.04 deleterious(0) probably_damaging(0.996) TCGA-55-8621-01 2 21232347 21232347 C A APOB Missense_Mutation p.A2465S 0.04 probably_damaging(0.991) TCGA-55-8621-01 2 216296657 216296657 T A FN1 Missense_Mutation p.K149M 0.03 deleterious(0) probably_damaging(1) TCGA-55-8621-01 2 228882443 228882443 C A SPHKAP Missense_Mutation p.A1043S 0.05 deleterious(0.04) probably_damaging(0.988) TCGA-55-8621-01 2 240036859 240036859 C A HDAC4 Missense_Mutation p.V556L 0.04 tolerated(0.47) benign(0.036) TCGA-55-8621-01 2 27278902 27278902 C G AGBL5 Missense_Mutation p.P421A 0.10 tolerated(0.19) benign(0.026) TCGA-55-8621-01 2 29404639 29404639 T A CLIP4 Missense_Mutation p.D666E 0.05 deleterious(0) probably_damaging(1) TCGA-55-8621-01 3 125828848 125828848 G T ALDH1L1 Nonsense_Mutation p.C772* 0.08 TCGA-55-8621-01 3 17131235 17131235 A T PLCL2 Missense_Mutation p.D946V 0.04 deleterious(0) probably_damaging(0.98) TCGA-55-8621-01 3 47364148 47364148 C T KLHL18 Silent p.F117F 0.07 TCGA-55-8621-01 4 123155939 123155939 T C KIAA1109 Missense_Mutation p.L1112S 0.10 benign(0.424) TCGA-55-8621-01 4 38910317 38910317 G T FAM114A1 Silent p.T254T 0.07 TCGA-55-8621-01 4 85716095 85716095 G A WDFY3 Missense_Mutation p.P1069S 0.09 tolerated(0.22) benign(0.011) TCGA-55-8621-01 5 127671178 127671178 A T FBN2 Nonsense_Mutation p.Y1272* 0.07 TCGA-55-8621-01 5 127782271 127782271 C - FBN2 Frame_Shift_Del p.I286Yfs*65 0.13 TCGA-55-8621-01 5 128324438 128324438 A G SLC27A6 Silent p.G277G 0.03 TCGA-55-8621-01 5 137521655 137521655 C A KIF20A Missense_Mutation p.H711N 0.07 tolerated(0.51) benign(0) TCGA-55-8621-01 5 158585762 158585762 T A RNF145 Silent p.R666R 0.07 TCGA-55-8621-01 5 161580280 161580280 G A GABRG2 Missense_Mutation p.R485H 0.07 tolerated(1) probably_damaging(0.999) TCGA-55-8621-01 5 42800829 42800829 G C SEPP1 Nonsense_Mutation p.S380* 0.05 TCGA-55-8621-01 6 38256120 38256120 T C BTBD9 Missense_Mutation p.Y461C 0.09 deleterious(0) probably_damaging(0.995) TCGA-55-8621-01 6 38897346 38897346 C T DNAH8 Silent p.G3509G 0.06 TCGA-55-8621-01 6 42619760 42619760 G A UBR2 Splice_Site p.X856_splice 0.05 TCGA-55-8621-01 6 90348409 90348409 C T LYRM2 Silent p.A9A 0.04 TCGA-55-8621-01 7 120740107 120740107 A T CPED1 Missense_Mutation p.T293S 0.09 deleterious(0.05) benign(0.254) TCGA-55-8621-01 7 129909579 129909579 A G CPA2 Missense_Mutation p.Q75R 0.05 deleterious(0.05) benign(0.004) TCGA-55-8621-01 7 140394714 140394714 C T ADCK2 3'UTR 0.18 TCGA-55-8621-01 7 141755405 141755405 G A MGAM Missense_Mutation p.R1121H 0.06 deleterious(0) probably_damaging(0.979) TCGA-55-8621-01 7 142327012 142327012 C A TRBV19 Missense_Mutation p.P104T 0.06 deleterious(0) benign(0.069) TCGA-55-8621-01 7 142750279 142750279 C A OR6V1 Missense_Mutation p.P281H 0.08 deleterious(0) probably_damaging(1) TCGA-55-8621-01 7 38725171 38725171 C G FAM183B 3'UTR 0.07 TCGA-55-8621-01 7 38725172 38725172 C A FAM183B 3'UTR 0.07 TCGA-55-8621-01 7 4259739 4259739 A T SDK1 Splice_Site p.X1847_splice 0.04 TCGA-55-8621-01 8 125061964 125061964 A G FER1L6 Silent p.G947G 0.07 TCGA-55-8621-01 8 145755946 145755946 C T ARHGAP39 Missense_Mutation p.A1069T 0.10 deleterious(0) probably_damaging(0.985) TCGA-55-8621-01 8 51617179 51617179 G A SNTG1 Missense_Mutation p.R353Q 0.04 tolerated(0.89) benign(0) TCGA-55-8621-01 8 71060598 71060598 T C NCOA2 Missense_Mutation p.I839V 0.04 tolerated(0.13) possibly_damaging(0.792) TCGA-55-8621-01 9 125486311 125486311 C T OR1L4 Missense_Mutation p.L15F 0.05 deleterious(0.01) benign(0.077) TCGA-55-8621-01 9 32632528 32632528 A T TAF1L Missense_Mutation p.L1017H 0.04 deleterious(0) probably_damaging(1) TCGA-55-8621-01 9 32632530 32632530 G T TAF1L Silent p.R1016R 0.04 TCGA-55-8621-01 9 94171765 94171765 T G NFIL3 Missense_Mutation p.M418L 0.05 tolerated_low_confidence(0.63) benign(0.002) TCGA-55-8621-01 X 100547920 100547920 C A TAF7L Silent p.G38G 0.05 TCGA-55-8621-01 X 151092424 151092424 A G MAGEA4 Silent p.P96P 0.06 TCGA-55-8621-01 X 1743162 1743162 C G ASMT Missense_Mutation p.A82G 0.04 tolerated(0.21) benign(0.026) TCGA-55-A48X-01 10 104164427 104164427 G A PSD Silent p.F871F 0.12 TCGA-55-A48X-01 10 104849608 104849608 G C NT5C2 Missense_Mutation p.P503A 0.20 tolerated(0.06) benign(0.017) TCGA-55-A48X-01 10 105178389 105178389 G T PDCD11 Missense_Mutation p.V702F 0.10 deleterious(0.02) benign(0.09) TCGA-55-A48X-01 10 118215294 118215294 C T PNLIPRP3 Silent p.L173L 0.12 TCGA-55-A48X-01 10 123310863 123310863 T G FGFR2 Missense_Mutation p.M189L 0.18 tolerated(0.33) benign(0.098) TCGA-55-A48X-01 10 56077039 56077039 T A PCDH15 Nonsense_Mutation p.R290* 0.15 TCGA-55-A48X-01 10 61007262 61007262 C A FAM13C 3'UTR 0.19 TCGA-55-A48X-01 10 70892714 70892714 G A VPS26A Missense_Mutation p.E22K 0.31 tolerated(0.14) benign(0.056) TCGA-55-A48X-01 10 72307196 72307196 C G PALD1 Nonsense_Mutation p.Y752* 0.10 TCGA-55-A48X-01 10 79556327 79556327 C A DLG5 Silent p.R1730R 0.13 TCGA-55-A48X-01 10 95326733 95326733 C A FFAR4 Missense_Mutation p.L86M 0.07 deleterious(0) probably_damaging(0.999) TCGA-55-A48X-01 10 99006077 99006077 C A ARHGAP19 Silent p.R315R 0.14 TCGA-55-A48X-01 10 99006078 99006078 C A ARHGAP19 Missense_Mutation p.R315L 0.13 tolerated(0.09) benign(0.081) TCGA-55-A48X-01 11 123504900 123504900 G A SCN3B Missense_Mutation p.A200V 0.13 deleterious(0.02) benign(0.335) TCGA-55-A48X-01 11 123624409 123624409 G A OR6X1 Missense_Mutation p.S273F 0.09 deleterious(0) probably_damaging(0.994) TCGA-55-A48X-01 11 124252358 124252358 C T OR8B2 Silent p.K294K 0.13 TCGA-55-A48X-01 11 124252521 124252521 G T OR8B2 Missense_Mutation p.T240N 0.09 deleterious_low_confidence(0) benign(0.094) TCGA-55-A48X-01 11 125299914 125299914 G T PKNOX2 Missense_Mutation p.D357Y 0.09 deleterious(0) probably_damaging(0.921) TCGA-55-A48X-01 11 129748437 129748437 G A NFRKB Silent p.G487G 0.15 TCGA-55-A48X-01 11 130275497 130275497 G T ADAMTS8 Missense_Mutation p.P876T 0.14 deleterious(0) probably_damaging(1) TCGA-55-A48X-01 11 16876465 16876465 C A PLEKHA7 Missense_Mutation p.V165L 0.16 deleterious(0) benign(0.347) TCGA-55-A48X-01 11 17418594 17418594 C A ABCC8 Splice_Site p.X1330_splice 0.17 TCGA-55-A48X-01 11 22364834 22364834 C T SLC17A6 Silent p.I127I 0.16 TCGA-55-A48X-01 11 30032270 30032270 A T KCNA4 Missense_Mutation p.D652E 0.14 deleterious_low_confidence(0.03) probably_damaging(0.97) TCGA-55-A48X-01 11 30914467 30914467 C A DCDC1 Silent p.P1657P 0.09 TCGA-55-A48X-01 11 34101177 34101177 A - CAPRIN1 Frame_Shift_Del p.V232Ffs*2 0.17 TCGA-55-A48X-01 11 3430116 3430116 G T TSSC2 RNA 0.09 TCGA-55-A48X-01 11 35457543 35457543 C T PAMR1 Missense_Mutation p.C431Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-A48X-01 11 4703224 4703224 A T OR51E2 Missense_Mutation p.C240S 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-A48X-01 11 47355267 47355267 C T MYBPC3 Missense_Mutation p.G1011R 0.12 deleterious(0.01) possibly_damaging(0.503) TCGA-55-A48X-01 11 50003872 50003872 G T OR4C12 Missense_Mutation p.P56T 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-A48X-01 11 55541083 55541083 T A OR5D13 Missense_Mutation p.L57H 0.05 deleterious(0) probably_damaging(0.992) TCGA-55-A48X-01 11 56020269 56020269 C A OR5T3 Missense_Mutation p.F198L 0.11 deleterious(0) possibly_damaging(0.651) TCGA-55-A48X-01 11 56431633 56431633 G T OR5AR1 Missense_Mutation p.A158S 0.15 deleterious(0.05) benign(0.007) TCGA-55-A48X-01 11 5878409 5878409 C A OR52E8 Missense_Mutation p.C175F 0.08 deleterious(0) probably_damaging(0.996) TCGA-55-A48X-01 11 59189872 59189872 G T OR5A2 Silent p.V185V 0.10 TCGA-55-A48X-01 11 62288538 62288538 C T AHNAK Missense_Mutation p.E4451K 0.10 benign(0.079) TCGA-55-A48X-01 11 63681629 63681629 G T RCOR2 Silent p.R230R 0.11 TCGA-55-A48X-01 11 64568402 64568402 T A MAP4K2 Missense_Mutation p.Q211L 0.25 deleterious(0) benign(0.039) TCGA-55-A48X-01 11 64673873 64673873 T A ATG2A Missense_Mutation p.Q1039L 0.19 tolerated(0.3) benign(0.039) TCGA-55-A48X-01 11 64677523 64677523 C T ATG2A Missense_Mutation p.A618T 0.09 tolerated(0.43) benign(0.002) TCGA-55-A48X-01 11 64939427 64939427 C A SPDYC Silent p.V71V 0.13 TCGA-55-A48X-01 11 64981857 64981857 G T CAPN1 3'Flank 0.12 TCGA-55-A48X-01 11 67287401 67287401 T C CABP2 Missense_Mutation p.N167S 0.17 deleterious(0) benign(0.095) TCGA-55-A48X-01 11 69995881 69995881 G T ANO1 Missense_Mutation p.G442C 0.07 deleterious(0) probably_damaging(1) TCGA-55-A48X-01 11 7081177 7081177 C A NLRP14 Missense_Mutation p.L896I 0.17 tolerated(0.09) probably_damaging(0.989) TCGA-55-A48X-01 11 7111071 7111071 C A RBMXL2 Missense_Mutation p.H240Q 0.12 deleterious(0.01) benign(0) TCGA-55-A48X-01 11 77702207 77702207 C T INTS4 Missense_Mutation p.E65K 0.08 tolerated(0.07) possibly_damaging(0.669) TCGA-55-A48X-01 11 88780623 88780623 T A GRM5 Nonsense_Mutation p.K140* 0.09 TCGA-55-A48X-01 11 9166609 9166609 C A DENND5A Missense_Mutation p.G1019W 0.18 deleterious(0) probably_damaging(1) TCGA-55-A48X-01 11 92507263 92507263 G C FAT3 Missense_Mutation p.A1418P 0.19 probably_damaging(0.975) TCGA-55-A48X-01 11 92616431 92616431 C A FAT3 Nonsense_Mutation p.S4270* 0.20 TCGA-55-A48X-01 11 94759270 94759270 G T KDM4E Missense_Mutation p.K183N 0.08 deleterious(0) probably_damaging(0.997) TCGA-55-A48X-01 12 116421204 116421204 G A MED13L Missense_Mutation p.A1558V 0.14 tolerated(0.21) unknown(0) TCGA-55-A48X-01 12 116457616 116457616 C T MED13L Missense_Mutation p.D263N 0.07 tolerated(0.24) unknown(0) TCGA-55-A48X-01 12 122361775 122361775 G A WDR66 Missense_Mutation p.G209E 0.15 tolerated(1) benign(0) TCGA-55-A48X-01 12 53205599 53205599 G C KRT4 Missense_Mutation p.L209V 0.12 deleterious(0) possibly_damaging(0.742) TCGA-55-A48X-01 12 54689014 54689014 G C NFE2 Missense_Mutation p.Q7E 0.17 tolerated(0.07) benign(0.001) TCGA-55-A48X-01 12 56088234 56088234 A T ITGA7 Missense_Mutation p.L788M 0.10 deleterious(0.03) probably_damaging(0.991) TCGA-55-A48X-01 12 56817240 56817240 C A TIMELESS Missense_Mutation p.V704F 0.15 deleterious(0) possibly_damaging(0.619) TCGA-55-A48X-01 12 56874170 56874170 C A GLS2 Missense_Mutation p.D62Y 0.18 deleterious(0) possibly_damaging(0.496) TCGA-55-A48X-01 12 68551692 68551692 C A IFNG Splice_Site p.X122_splice 0.13 TCGA-55-A48X-01 12 68551693 68551693 C A IFNG Silent p.S122S 0.13 TCGA-55-A48X-01 13 19752495 19752495 G A TUBA3C Missense_Mutation p.P89L 0.17 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-55-A48X-01 13 23912106 23912106 C T SACS Missense_Mutation p.G1970E 0.14 possibly_damaging(0.478) TCGA-55-A48X-01 13 25744258 25744258 G A AMER2 Silent p.P500P 0.08 TCGA-55-A48X-01 13 39588171 39588171 G A PROSER1 Silent p.L406L 0.12 TCGA-55-A48X-01 13 46544032 46544032 C A ZC3H13 Nonsense_Mutation p.E883* 0.12 TCGA-55-A48X-01 13 52549173 52549173 T A ATP7B Silent p.T61T 0.12 TCGA-55-A48X-01 13 64320996 64320996 C A AL445989.1 Silent p.G21G 0.15 TCGA-55-A48X-01 13 96416134 96416134 G C DNAJC3 Missense_Mutation p.Q334H 0.12 tolerated(0.07) benign(0.362) TCGA-55-A48X-01 14 102452667 102452667 G A DYNC1H1 Nonsense_Mutation p.W702* 0.12 TCGA-55-A48X-01 14 102452668 102452668 G T DYNC1H1 Missense_Mutation p.W702C 0.12 probably_damaging(1) TCGA-55-A48X-01 14 20502596 20502596 C T OR4K13 Missense_Mutation p.G108S 0.15 deleterious(0.02) probably_damaging(1) TCGA-55-A48X-01 14 21502399 21502399 G T RNASE13 Missense_Mutation p.P17T 0.19 deleterious(0.05) benign(0.109) TCGA-55-A48X-01 14 23235795 23235795 T C OXA1L Missense_Mutation p.L22S 0.12 deleterious_low_confidence(0) benign(0.095) TCGA-55-A48X-01 14 35739664 35739664 G T KIAA0391 Missense_Mutation p.R494S 0.14 deleterious(0.01) benign(0.04) TCGA-55-A48X-01 14 37145686 37145686 C T PAX9 3'UTR 0.24 TCGA-55-A48X-01 14 47120456 47120456 G T RPL10L Missense_Mutation p.R162S 0.09 tolerated(0.06) benign(0.353) TCGA-55-A48X-01 14 50558325 50558325 C A C14orf183 Missense_Mutation p.E81D 0.09 tolerated_low_confidence(0.17) benign(0.388) TCGA-55-A48X-01 14 61112949 61112949 C T SIX1 3'UTR 0.07 TCGA-55-A48X-01 14 64679625 64679625 G A SYNE2 Missense_Mutation p.V6320M 0.09 probably_damaging(0.978) TCGA-55-A48X-01 14 68220809 68220809 C A ZFYVE26 Missense_Mutation p.M2369I 0.09 tolerated(0.13) benign(0.222) TCGA-55-A48X-01 14 75376269 75376269 C A RPS6KL1 Missense_Mutation p.G416V 0.28 deleterious(0) benign(0.116) TCGA-55-A48X-01 14 81574987 81574987 G C TSHR Intron 0.19 TCGA-55-A48X-01 14 81609477 81609477 C A TSHR Missense_Mutation p.Q359K 0.11 tolerated(0.53) benign(0.373) TCGA-55-A48X-01 14 81964342 81964342 C G SEL1L Missense_Mutation p.R341P 0.12 deleterious(0) probably_damaging(1) TCGA-55-A48X-01 14 93185138 93185138 C A LGMN Nonsense_Mutation p.E64* 0.13 TCGA-55-A48X-01 14 95029849 95029849 G T SERPINA4 Silent p.L10L 0.16 TCGA-55-A48X-01 14 95035756 95035756 G T SERPINA4 Missense_Mutation p.V370L 0.08 deleterious(0.01) possibly_damaging(0.698) TCGA-55-A48X-01 15 25442595 25442595 G T SNORD115-14 3'Flank 0.18 TCGA-55-A48X-01 15 43738703 43738703 C A TP53BP1 Silent p.G974G 0.13 TCGA-55-A48X-01 15 45411538 45411538 C A DUOXA1 Silent p.L266L 0.11 TCGA-55-A48X-01 15 50546431 50546431 C A HDC Missense_Mutation p.V206L 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-55-A48X-01 15 51041025 51041025 T G SPPL2A Missense_Mutation p.N74H 0.11 tolerated(0.05) benign(0.03) TCGA-55-A48X-01 15 63076004 63076004 G A TLN2 Missense_Mutation p.G1884E 0.08 deleterious(0.01) possibly_damaging(0.857) TCGA-55-A48X-01 16 112582 112582 C A RHBDF1 Missense_Mutation p.G303C 0.16 deleterious(0) probably_damaging(1) TCGA-55-A48X-01 16 20441025 20441025 T C ACSM5 Missense_Mutation p.C343R 0.10 deleterious(0) probably_damaging(0.995) TCGA-55-A48X-01 16 20441026 20441026 G T ACSM5 Missense_Mutation p.C343F 0.10 deleterious(0) probably_damaging(0.993) TCGA-55-A48X-01 16 23080040 23080040 G C USP31 Missense_Mutation p.S1129C 0.13 deleterious_low_confidence(0.02) possibly_damaging(0.625) TCGA-55-A48X-01 16 24105517 24105517 G C PRKCB Silent p.L240L 0.16 TCGA-55-A48X-01 16 26147293 26147293 C A HS3ST4 Silent p.A365A 0.09 TCGA-55-A48X-01 16 30021430 30021430 C A DOC2A Silent p.R38R 0.13 TCGA-55-A48X-01 16 31092735 31092735 A T ZNF646 Missense_Mutation p.K1697M 0.12 deleterious(0) probably_damaging(0.992) TCGA-55-A48X-01 16 338152 338152 C T AXIN1 Silent p.K853K 0.13 TCGA-55-A48X-01 16 66757707 66757707 G A DYNC1LI2 Missense_Mutation p.S466L 0.20 deleterious(0.02) benign(0.077) TCGA-55-A48X-01 16 71418737 71418737 A T CALB2 Nonsense_Mutation p.K209* 0.15 TCGA-55-A48X-01 16 84940227 84940227 G T CRISPLD2 Silent p.R491R 0.17 TCGA-55-A48X-01 16 89178649 89178649 A T ACSF3 Missense_Mutation p.K324N 0.21 tolerated(0.48) benign(0.03) TCGA-55-A48X-01 17 10428908 10428908 C G MYH2 Missense_Mutation p.C1466S 0.10 deleterious(0.04) benign(0) TCGA-55-A48X-01 17 11532876 11532876 C G DNAH9 Missense_Mutation p.S498C 0.25 benign(0.001) TCGA-55-A48X-01 17 16466460 16466460 C T ZNF287 Missense_Mutation p.E239K 0.07 tolerated(0.26) benign(0.005) TCGA-55-A48X-01 17 17698452 17698452 G T RAI1 Silent p.P730P 0.09 TCGA-55-A48X-01 17 18075527 18075527 A T MYO15A Missense_Mutation p.S3425C 0.13 unknown(0) TCGA-55-A48X-01 17 19566812 19566812 G T ALDH3A2 Missense_Mutation p.K369N 0.18 deleterious(0.02) benign(0.067) TCGA-55-A48X-01 17 19646696 19646696 C A ALDH3A1 Missense_Mutation p.W81C 0.12 deleterious(0) probably_damaging(0.998) TCGA-55-A48X-01 17 20108477 20108477 C A SPECC1 Missense_Mutation p.S372Y 0.10 deleterious(0.03) probably_damaging(0.971) TCGA-55-A48X-01 17 21319112 21319112 A T KCNJ12 Missense_Mutation p.E153V 0.10 deleterious(0) possibly_damaging(0.875) TCGA-55-A48X-01 17 21319828 21319828 G T KCNJ12 Missense_Mutation p.A392S 0.08 tolerated(0.71) benign(0) TCGA-55-A48X-01 17 25749106 25749106 G T TBC1D3P5 RNA 0.23 TCGA-55-A48X-01 17 28890266 28890266 C G TBC1D29 Missense_Mutation p.H92Q 0.14 tolerated(0.36) benign(0.025) TCGA-55-A48X-01 17 3595225 3595225 C T P2RX5 Intron 0.28 TCGA-55-A48X-01 17 37455265 37455265 C A FBXL20 Nonsense_Mutation p.G103* 0.20 TCGA-55-A48X-01 17 39768634 39768634 C A KRT16 Missense_Mutation p.G103C 0.15 deleterious(0.04) unknown(0) TCGA-55-A48X-01 17 39768802 39768802 C A KRT16 Missense_Mutation p.G47W 0.14 deleterious(0) unknown(0) TCGA-55-A48X-01 17 4337385 4337385 G T SPNS3 Silent p.P41P 0.14 TCGA-55-A48X-01 17 43922420 43922420 C A SPPL2C Missense_Mutation p.P50T 0.14 deleterious(0) probably_damaging(1) TCGA-55-A48X-01 17 44248336 44248336 T A KANSL1 Missense_Mutation p.R392W 0.06 deleterious(0) probably_damaging(0.961) TCGA-55-A48X-01 17 46628451 46628451 T A HOXB3 Missense_Mutation p.S181C 0.22 deleterious(0) benign(0.066) TCGA-55-A48X-01 17 54969300 54969300 C A TRIM25 Nonsense_Mutation p.E552* 0.09 TCGA-55-A48X-01 17 61621014 61621014 C A KCNH6 Missense_Mutation p.N742K 0.10 tolerated(0.44) benign(0.002) TCGA-55-A48X-01 17 62019242 62019242 C A SCN4A Missense_Mutation p.G1467V 0.11 deleterious(0) possibly_damaging(0.525) TCGA-55-A48X-01 17 62291188 62291188 C A TEX2 Silent p.V130V 0.17 TCGA-55-A48X-01 17 7147489 7147489 G A CTDNEP1 3'UTR 0.28 TCGA-55-A48X-01 17 7340175 7340178 GCAG - TMEM102 Frame_Shift_Del p.A293Lfs*25 0.14 TCGA-55-A48X-01 17 74005167 74005167 C A EVPL Missense_Mutation p.Q1373H 0.12 deleterious(0.04) possibly_damaging(0.794) TCGA-55-A48X-01 17 74625477 74625477 T A ST6GALNAC1 Missense_Mutation p.R150W 0.19 benign(0.023) TCGA-55-A48X-01 17 7579358 7579358 C A TP53 Missense_Mutation p.R110L 0.10 deleterious(0.04) possibly_damaging(0.898) TCGA-55-A48X-01 17 77077064 77077064 C T ENGASE Missense_Mutation p.R261W 0.12 deleterious(0) possibly_damaging(0.901) TCGA-55-A48X-01 18 11868629 11868629 C A GNAL Missense_Mutation p.S333Y 0.13 deleterious(0) probably_damaging(0.958) TCGA-55-A48X-01 18 3214963 3214963 C G MYOM1 Missense_Mutation p.A87P 0.16 tolerated_low_confidence(0.12) possibly_damaging(0.649) TCGA-55-A48X-01 18 32455295 32455295 C A DTNA Silent p.T525T 0.11 TCGA-55-A48X-01 18 43262478 43262478 C T SLC14A2 Silent p.V919V 0.14 TCGA-55-A48X-01 18 43514917 43514917 C A EPG5 Silent p.L705L 0.09 TCGA-55-A48X-01 18 47402097 47402097 T G MYO5B Missense_Mutation p.Q1166P 0.08 deleterious(0.02) possibly_damaging(0.616) TCGA-55-A48X-01 18 5396314 5396314 C G EPB41L3 Silent p.T953T 0.13 TCGA-55-A48X-01 18 7050898 7050898 T A LAMA1 Missense_Mutation p.N128I 0.14 deleterious(0) probably_damaging(0.98) TCGA-55-A48X-01 19 10131974 10131974 G A RDH8 Missense_Mutation p.G214R 0.10 tolerated(0.56) benign(0.002) TCGA-55-A48X-01 19 12800190 12800190 T A FBXW9 Missense_Mutation p.N433I 0.13 deleterious(0) possibly_damaging(0.883) TCGA-55-A48X-01 19 14991855 14991856 - A OR7A17 Frame_Shift_Ins p.V105Cfs*17 0.18 TCGA-55-A48X-01 19 17922639 17922639 C T B3GNT3 Missense_Mutation p.S276F 0.15 deleterious(0) probably_damaging(1) TCGA-55-A48X-01 19 18121479 18121479 G T ARRDC2 Missense_Mutation p.G371C 0.13 tolerated(0.3) possibly_damaging(0.759) TCGA-55-A48X-01 19 19329795 19329795 G T NCAN Missense_Mutation p.A49S 0.24 deleterious(0.04) probably_damaging(0.998) TCGA-55-A48X-01 19 31038921 31038921 G T ZNF536 Nonsense_Mutation p.E799* 0.13 TCGA-55-A48X-01 19 31769822 31769822 G A TSHZ3 Missense_Mutation p.H293Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-A48X-01 19 35791225 35791225 C A MAG Silent p.T296T 0.10 TCGA-55-A48X-01 19 43772242 43772242 G T PSG9 Missense_Mutation p.P42T 0.16 deleterious(0) probably_damaging(1) TCGA-55-A48X-01 19 49652861 49652861 G T PPFIA3 Missense_Mutation p.D1138Y 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-A48X-01 19 52034550 52034550 C T SIGLEC6 Nonsense_Mutation p.W97* 0.19 TCGA-55-A48X-01 19 52719115 52719115 G T PPP2R1A Missense_Mutation p.E297D 0.08 deleterious(0.01) benign(0.43) TCGA-55-A48X-01 19 53015571 53015571 C A ZNF578 3'Flank 0.07 TCGA-55-A48X-01 19 55286890 55286890 C A KIR2DL1 Missense_Mutation p.P215Q 0.17 deleterious(0) probably_damaging(0.974) TCGA-55-A48X-01 19 55385723 55385723 G A FCAR 5'Flank 0.16 TCGA-55-A48X-01 19 55597560 55597560 G A EPS8L1 Silent p.L550L 0.19 TCGA-55-A48X-01 19 57089869 57089869 A G ZNF470 Missense_Mutation p.H691R 0.19 tolerated(0.1) benign(0.051) TCGA-55-A48X-01 19 57327052 57327052 C A PEG3 Missense_Mutation p.G920C 0.24 deleterious(0.01) probably_damaging(0.935) TCGA-55-A48X-01 19 8320499 8320499 G A CERS4 Silent p.L100L 0.15 TCGA-55-A48X-01 1 102269917 102269917 G T OLFM3 Nonsense_Mutation p.Y418* 0.10 TCGA-55-A48X-01 1 104120392 104120392 G T AMY2B Missense_Mutation p.W424L 0.11 deleterious(0) probably_damaging(0.996) TCGA-55-A48X-01 1 109815630 109815630 C G CELSR2 Silent p.P2773P 0.19 TCGA-55-A48X-01 1 110038501 110038501 G T CYB561D1 Missense_Mutation p.A126S 0.12 deleterious(0.04) possibly_damaging(0.782) TCGA-55-A48X-01 1 117948208 117948208 G T MAN1A2 Missense_Mutation p.G199V 0.14 deleterious(0) benign(0.063) TCGA-55-A48X-01 1 11907325 11907325 G A NPPA Missense_Mutation p.R99W 0.14 deleterious(0) possibly_damaging(0.794) TCGA-55-A48X-01 1 11980324 11980324 C A KIAA2013 3'UTR 0.12 TCGA-55-A48X-01 1 1226738 1226738 C T SCNN1D Silent p.A719A 0.15 TCGA-55-A48X-01 1 143767396 143767396 C A PPIAL4G Missense_Mutation p.K151N 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.476) TCGA-55-A48X-01 1 145281479 145281479 G T NOTCH2NL Missense_Mutation p.G137W 0.04 deleterious(0) probably_damaging(1) TCGA-55-A48X-01 1 14925523 14925523 C T KAZN Silent p.L10L 0.17 TCGA-55-A48X-01 1 14925524 14925524 C T KAZN Missense_Mutation p.R11C 0.16 deleterious(0) possibly_damaging(0.876) TCGA-55-A48X-01 1 152057968 152057968 G T TCHHL1 Silent p.A730A 0.13 TCGA-55-A48X-01 1 152552046 152552046 G T LCE3D 3'UTR 0.20 TCGA-55-A48X-01 1 152552047 152552047 G T LCE3D 3'UTR 0.20 TCGA-55-A48X-01 1 153277435 153277435 C T PGLYRP3 Missense_Mutation p.G122S 0.12 deleterious(0.02) possibly_damaging(0.764) TCGA-55-A48X-01 1 155288705 155288705 G C FDPS Missense_Mutation p.A278P 0.13 deleterious(0.04) probably_damaging(0.955) TCGA-55-A48X-01 1 156264681 156264681 C A C1orf85 Missense_Mutation p.V83L 0.07 tolerated(0.07) possibly_damaging(0.85) TCGA-55-A48X-01 1 156264682 156264682 C A C1orf85 Missense_Mutation p.M82I 0.07 tolerated(0.07) benign(0.003) TCGA-55-A48X-01 1 156643271 156643271 G C NES Silent p.G319G 0.26 TCGA-55-A48X-01 1 156882353 156882353 C T PEAR1 Silent p.C716C 0.29 TCGA-55-A48X-01 1 157504438 157504438 G T FCRL5 Silent p.P549P 0.25 TCGA-55-A48X-01 1 15833410 15833410 C A CASP9 Missense_Mutation p.G205V 0.17 tolerated(0.31) benign(0.034) TCGA-55-A48X-01 1 158621214 158621214 T C SPTA1 Silent p.V1140V 0.06 TCGA-55-A48X-01 1 158621215 158621215 A T SPTA1 Missense_Mutation p.V1140E 0.07 tolerated(0.07) probably_damaging(0.969) TCGA-55-A48X-01 1 161600894 161600894 C T FCGR3B Silent p.Q33Q 0.11 TCGA-55-A48X-01 1 171077258 171077258 G T FMO3 Missense_Mutation p.D175Y 0.17 deleterious(0.04) benign(0.236) TCGA-55-A48X-01 1 172277946 172277946 A G DNM3 Silent p.L616L 0.12 TCGA-55-A48X-01 1 176863703 176863703 G T ASTN1 Missense_Mutation p.Q979K 0.09 tolerated(1) benign(0.01) TCGA-55-A48X-01 1 180159673 180159673 G T QSOX1 Missense_Mutation p.V416L 0.10 deleterious(0) possibly_damaging(0.702) TCGA-55-A48X-01 1 202194549 202194549 A G LGR6 Splice_Site p.X71_splice 0.12 TCGA-55-A48X-01 1 204956610 204956610 G T NFASC Missense_Mutation p.W845C 0.11 deleterious(0) probably_damaging(0.999) TCGA-55-A48X-01 1 215408511 215408511 G T KCNK2 3'UTR 0.07 TCGA-55-A48X-01 1 220184353 220184353 C T EPRS Missense_Mutation p.E514K 0.21 tolerated(0.6) benign(0.016) TCGA-55-A48X-01 1 220284169 220284169 G T IARS2 Nonsense_Mutation p.E457* 0.17 TCGA-55-A48X-01 1 220971349 220971349 A G MARC1 Missense_Mutation p.Y249C 0.12 deleterious(0) benign(0.209) TCGA-55-A48X-01 1 228479688 228479688 G A OBSCN Missense_Mutation p.A3906T 0.08 benign(0.19) TCGA-55-A48X-01 1 243362481 243362481 G A CEP170 Missense_Mutation p.P171L 0.13 tolerated(0.61) benign(0.109) TCGA-55-A48X-01 1 24426235 24426235 G A MYOM3 Silent p.R197R 0.08 TCGA-55-A48X-01 1 246784884 246784884 G T CNST Missense_Mutation p.R178L 0.20 deleterious(0.04) probably_damaging(0.96) TCGA-55-A48X-01 1 247587720 247587720 C A NLRP3 Silent p.A325A 0.06 TCGA-55-A48X-01 1 247695441 247695441 C G OR2C3 Missense_Mutation p.A125P 0.10 deleterious(0.01) possibly_damaging(0.791) TCGA-55-A48X-01 1 248059440 248059440 G A OR2W3 Silent p.L184L 0.21 TCGA-55-A48X-01 1 248059611 248059611 C A OR2W3 Nonsense_Mutation p.C241* 0.23 TCGA-55-A48X-01 1 248308837 248308837 C A OR2M5 Missense_Mutation p.L130I 0.12 deleterious(0) probably_damaging(0.977) TCGA-55-A48X-01 1 248366895 248366895 C A OR2M3 Missense_Mutation p.H176N 0.17 deleterious(0.02) benign(0.17) TCGA-55-A48X-01 1 26800306 26800306 A G HMGN2 Intron 0.24 TCGA-55-A48X-01 1 27688258 27688258 G A MAP3K6 Missense_Mutation p.H506Y 0.26 deleterious(0) possibly_damaging(0.53) TCGA-55-A48X-01 1 45293185 45293185 G T PTCH2 Missense_Mutation p.R754S 0.13 tolerated(0.1) benign(0.009) TCGA-55-A48X-01 1 46685388 46685388 C A LURAP1 Silent p.I72I 0.10 TCGA-55-A48X-01 1 47123832 47123832 C T ATPAF1 Missense_Mutation p.M175I 0.19 deleterious(0.01) possibly_damaging(0.561) TCGA-55-A48X-01 1 60456394 60456394 C A C1orf87 Missense_Mutation p.G531V 0.17 deleterious(0) probably_damaging(1) TCGA-55-A48X-01 1 6196890 6196890 G T CHD5 Silent p.T824T 0.10 TCGA-55-A48X-01 1 75229814 75229814 G T TYW3 3'UTR 0.19 TCGA-55-A48X-01 1 7858635 7858635 T C PER3 Missense_Mutation p.I231T 0.12 tolerated(0.45) possibly_damaging(0.507) TCGA-55-A48X-01 1 89655810 89655810 C A GBP4 Missense_Mutation p.V370L 0.11 tolerated(1) benign(0.092) TCGA-55-A48X-01 1 89729433 89729433 G A GBP5 Missense_Mutation p.R450W 0.15 deleterious(0.01) possibly_damaging(0.574) TCGA-55-A48X-01 20 21494378 21494378 C A NKX2-2 5'UTR 0.19 TCGA-55-A48X-01 20 30432879 30432879 G T FOXS1 Missense_Mutation p.P156Q 0.09 deleterious(0.04) possibly_damaging(0.548) TCGA-55-A48X-01 20 30659556 30659556 G T HCK Missense_Mutation p.V52L 0.11 tolerated(0.21) benign(0.08) TCGA-55-A48X-01 20 37144833 37144833 A T RALGAPB Splice_Site p.X291_splice 0.21 TCGA-55-A48X-01 20 42965716 42965716 G A R3HDML 5'UTR 0.30 TCGA-55-A48X-01 20 44665968 44665968 C A SLC12A5 Missense_Mutation p.L209M 0.27 deleterious(0) probably_damaging(1) TCGA-55-A48X-01 20 46307511 46307511 T A SULF2 Missense_Mutation p.T368S 0.30 deleterious(0) probably_damaging(0.983) TCGA-55-A48X-01 20 48600409 48600409 T C SNAI1 Missense_Mutation p.I44T 0.09 deleterious(0.04) benign(0.169) TCGA-55-A48X-01 20 56099036 56099036 C T CTCFL Missense_Mutation p.E76K 0.20 deleterious(0.02) benign(0.242) TCGA-55-A48X-01 20 61511301 61511301 C T DIDO1 Missense_Mutation p.E2003K 0.14 possibly_damaging(0.64) TCGA-55-A48X-01 20 61588824 61588824 G T SLC17A9 Missense_Mutation p.A97S 0.24 tolerated(0.08) probably_damaging(0.971) TCGA-55-A48X-01 20 62701573 62701573 A C TCEA2 Intron 0.36 TCGA-55-A48X-01 20 9520196 9520196 G T PAK7 Silent p.A691A 0.08 TCGA-55-A48X-01 21 19713766 19713766 G T TMPRSS15 Missense_Mutation p.P510T 0.18 tolerated(0.15) probably_damaging(1) TCGA-55-A48X-01 21 31869296 31869296 C A KRTAP19-4 Nonsense_Mutation p.G45* 0.11 TCGA-55-A48X-01 21 32127468 32127468 A C KRTAP21-1 Missense_Mutation p.S77A 0.15 deleterious_low_confidence(0) unknown(0) TCGA-55-A48X-01 21 32595831 32595831 T G TIAM1 Missense_Mutation p.Q629P 0.12 deleterious(0) possibly_damaging(0.492) TCGA-55-A48X-01 21 33044562 33044562 A T SCAF4 Missense_Mutation p.M865K 0.13 unknown(0) TCGA-55-A48X-01 21 33684034 33684034 C A MRAP Missense_Mutation p.H82Q 0.07 tolerated(0.22) benign(0.012) TCGA-55-A48X-01 21 38884474 38884475 - A DYRK1A Frame_Shift_Ins p.S645Ifs*30 0.10 TCGA-55-A48X-01 21 41151018 41151018 C T IGSF5 Silent p.D240D 0.08 TCGA-55-A48X-01 21 47423396 47423396 C T COL6A1 Silent p.A852A 0.15 TCGA-55-A48X-01 21 47705111 47705111 T A MCM3AP Silent p.P30P 0.14 TCGA-55-A48X-01 22 16287404 16287404 T A POTEH Missense_Mutation p.D161V 0.08 deleterious(0) probably_damaging(0.999) TCGA-55-A48X-01 22 17072683 17072683 G T CCT8L2 Missense_Mutation p.P253Q 0.09 deleterious(0.01) probably_damaging(0.93) TCGA-55-A48X-01 22 17450944 17450944 G T GAB4 Missense_Mutation p.P276T 0.12 tolerated(0.08) benign(0.006) TCGA-55-A48X-01 22 23055665 23055665 G T IGLV3-21 Missense_Mutation p.D110Y 0.12 deleterious(0.01) benign(0.102) TCGA-55-A48X-01 22 23401805 23401805 C T RTDR1 Silent p.K294K 0.12 TCGA-55-A48X-01 22 29688515 29688515 G T EWSR1 Missense_Mutation p.A367S 0.13 tolerated(0.39) unknown(0) TCGA-55-A48X-01 22 40055836 40055836 G T CACNA1I Silent p.L861L 0.15 TCGA-55-A48X-01 22 41601354 41601354 A T L3MBTL2 5'UTR 0.16 TCGA-55-A48X-01 22 44131813 44131813 C A EFCAB6 Nonsense_Mutation p.G190* 0.09 TCGA-55-A48X-01 22 45258503 45258503 C G ARHGAP8 3'UTR 0.17 TCGA-55-A48X-01 22 50468909 50468909 C T TTLL8 Missense_Mutation p.R734Q 0.11 tolerated(0.62) benign(0.001) TCGA-55-A48X-01 22 51160207 51160207 G A SHANK3 Missense_Mutation p.G1332R 0.24 probably_damaging(0.999) TCGA-55-A48X-01 2 128046313 128046313 C G ERCC3 Missense_Mutation p.R317T 0.14 deleterious(0) probably_damaging(0.996) TCGA-55-A48X-01 2 136602144 136602144 C G MCM6 Missense_Mutation p.E774Q 0.10 tolerated(0.09) possibly_damaging(0.798) TCGA-55-A48X-01 2 152534389 152534389 C A NEB Splice_Site p.X1189_splice 0.15 TCGA-55-A48X-01 2 162273094 162273094 G T TBR1 Missense_Mutation p.G58V 0.16 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-55-A48X-01 2 163174656 163174656 C A IFIH1 Silent p.G54G 0.14 TCGA-55-A48X-01 2 173830352 173830352 C T RAPGEF4 Missense_Mutation p.S254F 0.15 deleterious(0) benign(0.305) TCGA-55-A48X-01 2 176973874 176973874 C G HOXD11 3'UTR 0.09 TCGA-55-A48X-01 2 178417068 178417068 T A TTC30B Missense_Mutation p.R142W 0.15 deleterious(0.02) benign(0.267) TCGA-55-A48X-01 2 183621132 183621132 A G DNAJC10 Missense_Mutation p.D582G 0.18 deleterious(0.01) probably_damaging(1) TCGA-55-A48X-01 2 189849637 189849637 A T COL3A1 Silent p.P77P 0.14 TCGA-55-A48X-01 2 189927997 189927997 C A COL5A2 Splice_Site p.X591_splice 0.15 TCGA-55-A48X-01 2 201534313 201534313 G C AOX1 Missense_Mutation p.G1272R 0.17 deleterious(0.03) possibly_damaging(0.881) TCGA-55-A48X-01 2 208725974 208725974 T A PLEKHM3 Nonsense_Mutation p.K655* 0.10 TCGA-55-A48X-01 2 209025518 209025518 C G CRYGA 3'UTR 0.08 TCGA-55-A48X-01 2 210559333 210559333 A T MAP2 Silent p.A813A 0.09 TCGA-55-A48X-01 2 234681091 234681091 G C UGT1A4 Missense_Mutation p.L497F 0.11 deleterious(0.04) probably_damaging(1) TCGA-55-A48X-01 2 241631604 241631604 G T AQP12A Silent p.S79S 0.22 TCGA-55-A48X-01 2 27156157 27156157 C A DPYSL5 Missense_Mutation p.S249Y 0.16 deleterious(0) probably_damaging(0.998) TCGA-55-A48X-01 2 33952554 33952554 C T AC009499.1 Intron 0.21 TCGA-55-A48X-01 2 37458722 37458722 C A CEBPZ 5'UTR 0.09 TCGA-55-A48X-01 2 37505047 37505047 C A PRKD3 Nonsense_Mutation p.E420* 0.19 TCGA-55-A48X-01 2 61319701 61319701 G T KIAA1841 Silent p.L397L 0.17 TCGA-55-A48X-01 2 62103366 62103366 C T CCT4 Missense_Mutation p.D261N 0.13 deleterious(0.03) possibly_damaging(0.708) TCGA-55-A48X-01 2 89339865 89339865 C G IGKV1-12 Silent p.L69L 0.24 TCGA-55-A48X-01 3 100962535 100962535 C T IMPG2 Silent p.V880V 0.11 TCGA-55-A48X-01 3 12183497 12183497 G T SYN2 Splice_Site 0.22 TCGA-55-A48X-01 3 131221616 131221616 C A MRPL3 Missense_Mutation p.R17L 0.16 tolerated_low_confidence(0.2) benign(0.061) TCGA-55-A48X-01 3 131221617 131221617 G A MRPL3 Nonsense_Mutation p.R17* 0.16 TCGA-55-A48X-01 3 136170967 136170967 G A STAG1 Nonsense_Mutation p.Q446* 0.13 TCGA-55-A48X-01 3 164764780 164764780 G T SI Missense_Mutation p.P579H 0.11 deleterious(0.03) benign(0.154) TCGA-55-A48X-01 3 164906524 164906524 T A SLITRK3 Missense_Mutation p.T699S 0.15 tolerated(1) benign(0.003) TCGA-55-A48X-01 3 167245634 167245634 T G WDR49 Missense_Mutation p.N508H 0.18 deleterious(0.05) benign(0.235) TCGA-55-A48X-01 3 168269725 168269725 G T MIR551B RNA 0.17 TCGA-55-A48X-01 3 186281972 186281972 G A TBCCD1 Silent p.Y49Y 0.12 TCGA-55-A48X-01 3 194373706 194373706 C A LSG1 Missense_Mutation p.D309Y 0.16 deleterious(0.02) possibly_damaging(0.474) TCGA-55-A48X-01 3 52842192 52842192 C T ITIH3 Missense_Mutation p.P833L 0.13 tolerated(0.13) benign(0.012) TCGA-55-A48X-01 3 66465370 66465370 T G LRIG1 Silent p.A207A 0.13 TCGA-55-A48X-01 3 87027793 87027793 C A VGLL3 Nonsense_Mutation p.G96* 0.07 TCGA-55-A48X-01 3 88040745 88040745 G A HTR1F Silent p.K282K 0.10 TCGA-55-A48X-01 3 97851777 97851777 C T OR5H1 Missense_Mutation p.P79L 0.14 deleterious(0.01) benign(0.318) TCGA-55-A48X-01 3 98189193 98189193 T C OR5K1 Missense_Mutation p.M258T 0.10 deleterious(0.03) benign(0.161) TCGA-55-A48X-01 4 103595154 103595154 A C MANBA Missense_Mutation p.I345S 0.10 deleterious(0) probably_damaging(0.998) TCGA-55-A48X-01 4 111441496 111441496 C A ENPEP Missense_Mutation p.N567K 0.14 tolerated(0.1) benign(0.097) TCGA-55-A48X-01 4 114179548 114179548 C A ANK2 Missense_Mutation p.S456Y 0.12 benign(0.167) TCGA-55-A48X-01 4 114278467 114278467 C A ANK2 Missense_Mutation p.T2898N 0.09 benign(0.305) TCGA-55-A48X-01 4 114278468 114278468 T C ANK2 Silent p.T2898T 0.10 TCGA-55-A48X-01 4 120072034 120072034 T A MYOZ2 Missense_Mutation p.D28E 0.08 tolerated(0.4) benign(0.049) TCGA-55-A48X-01 4 120072035 120072035 G T MYOZ2 Missense_Mutation p.G29C 0.08 tolerated(0.05) possibly_damaging(0.852) TCGA-55-A48X-01 4 120188591 120188591 G T USP53 Missense_Mutation p.R363S 0.09 deleterious(0.02) benign(0.097) TCGA-55-A48X-01 4 125592355 125592355 C A ANKRD50 Missense_Mutation p.V693L 0.09 deleterious(0.04) possibly_damaging(0.836) TCGA-55-A48X-01 4 156135158 156135158 G A NPY2R Missense_Mutation p.G23R 0.14 tolerated_low_confidence(0.53) benign(0.007) TCGA-55-A48X-01 4 160251573 160251573 A T RAPGEF2 Missense_Mutation p.R303W 0.06 deleterious(0) probably_damaging(1) TCGA-55-A48X-01 4 22437041 22437041 C A GPR125 Missense_Mutation p.A446S 0.11 tolerated(0.09) possibly_damaging(0.785) TCGA-55-A48X-01 4 2831814 2831814 A T SH3BP2 Missense_Mutation p.E451V 0.11 deleterious_low_confidence(0.03) possibly_damaging(0.635) TCGA-55-A48X-01 4 39878739 39878739 G A PDS5A Missense_Mutation p.S676F 0.19 deleterious(0.03) probably_damaging(0.994) TCGA-55-A48X-01 4 47944162 47944162 C A CNGA1 Missense_Mutation p.E220D 0.20 tolerated(0.12) benign(0.218) TCGA-55-A48X-01 4 48486061 48486061 C G SLC10A4 Missense_Mutation p.F161L 0.10 tolerated(0.07) benign(0.02) TCGA-55-A48X-01 4 55139798 55139798 C T PDGFRA Missense_Mutation p.R487C 0.06 deleterious(0.01) benign(0.245) TCGA-55-A48X-01 4 5961253 5961253 C A C4orf50 Missense_Mutation p.G701V 0.17 deleterious(0.02) probably_damaging(0.944) TCGA-55-A48X-01 4 70079956 70079956 G A UGT2B11 Missense_Mutation p.A162V 0.15 deleterious(0) benign(0.003) TCGA-55-A48X-01 4 70351084 70351084 G T UGT2B4 Silent p.I384I 0.11 TCGA-55-A48X-01 4 71024441 71024441 C A C4orf40 Missense_Mutation p.P158T 0.15 deleterious(0.02) unknown(0) TCGA-55-A48X-01 4 71024442 71024442 C A C4orf40 Missense_Mutation p.P158H 0.16 deleterious(0) unknown(0) TCGA-55-A48X-01 4 74005500 74005500 C T ANKRD17 Missense_Mutation p.A945T 0.16 benign(0.011) TCGA-55-A48X-01 4 74719546 74719546 C T PF4V1 Silent p.T49T 0.19 TCGA-55-A48X-01 4 78697426 78697426 C A CNOT6L Silent p.S42S 0.13 TCGA-55-A48X-01 4 80328020 80328020 T A GK2 Silent p.P445P 0.13 TCGA-55-A48X-01 4 87769960 87769960 C A SLC10A6 Missense_Mutation p.M103I 0.08 tolerated(0.08) possibly_damaging(0.793) TCGA-55-A48X-01 4 94693338 94693338 C G GRID2 Missense_Mutation p.L905V 0.06 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-55-A48X-01 5 100192038 100192038 G T ST8SIA4 Missense_Mutation p.T189N 0.14 benign(0.053) TCGA-55-A48X-01 5 121188090 121188090 C A FTMT Missense_Mutation p.D144E 0.07 deleterious(0.02) benign(0.08) TCGA-55-A48X-01 5 121787144 121787144 A G SNCAIP Missense_Mutation p.M868V 0.09 tolerated(0.06) probably_damaging(0.968) TCGA-55-A48X-01 5 122911529 122911529 A T CSNK1G3 Missense_Mutation p.H182L 0.16 deleterious(0) probably_damaging(0.993) TCGA-55-A48X-01 5 126738321 126738321 G T MEGF10 Silent p.T288T 0.12 TCGA-55-A48X-01 5 128797440 128797440 G A ADAMTS19 Missense_Mutation p.G240E 0.11 deleterious(0.02) benign(0.41) TCGA-55-A48X-01 5 137424671 137424671 G C WNT8A Missense_Mutation p.R141S 0.13 deleterious(0.04) benign(0.197) TCGA-55-A48X-01 5 140021618 140021618 A T TMCO6 Missense_Mutation p.S160C 0.14 deleterious(0) possibly_damaging(0.694) TCGA-55-A48X-01 5 140306788 140306788 C T PCDHAC1 Missense_Mutation p.P104L 0.11 deleterious(0) probably_damaging(0.994) TCGA-55-A48X-01 5 140480384 140480384 G T PCDHB3 Missense_Mutation p.D51Y 0.09 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-55-A48X-01 5 140503564 140503564 G T PCDHB4 Missense_Mutation p.V662L 0.14 deleterious_low_confidence(0) possibly_damaging(0.51) TCGA-55-A48X-01 5 140710791 140710791 G T PCDHGA1 Silent p.L180L 0.18 TCGA-55-A48X-01 5 140745332 140745332 C A PCDHGA5 Missense_Mutation p.P479T 0.15 deleterious_low_confidence(0.01) benign(0.159) TCGA-55-A48X-01 5 140905720 140905720 C T DIAPH1 Silent p.Q1153Q 0.14 TCGA-55-A48X-01 5 145641295 145641295 C T RBM27 Missense_Mutation p.P706S 0.06 tolerated(0.06) benign(0.02) TCGA-55-A48X-01 5 15936923 15936923 C A FBXL7 Silent p.I368I 0.21 TCGA-55-A48X-01 5 161322792 161322792 C A GABRA1 Nonsense_Mutation p.S326* 0.13 TCGA-55-A48X-01 5 169021471 169021471 G A SPDL1 Missense_Mutation p.S252N 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-55-A48X-01 5 26903894 26903894 C T CDH9 Missense_Mutation p.G284E 0.11 deleterious(0.01) possibly_damaging(0.905) TCGA-55-A48X-01 5 39308351 39308351 C A C9 Missense_Mutation p.K407N 0.16 tolerated(0.14) possibly_damaging(0.474) TCGA-55-A48X-01 5 54618264 54618264 A G SKIV2L2 Missense_Mutation p.I82V 0.12 tolerated(0.34) benign(0) TCGA-55-A48X-01 5 56777331 56777331 A G ACTBL2 3'UTR 0.14 TCGA-55-A48X-01 5 67584422 67584422 C T PIK3R1 Intron 0.15 TCGA-55-A48X-01 5 80168939 80168939 A T MSH3 Silent p.A1045A 0.12 TCGA-55-A48X-01 5 82833739 82833739 A T VCAN Silent p.T1639T 0.09 TCGA-55-A48X-01 5 9108278 9108278 C A SEMA5A Missense_Mutation p.G683W 0.07 deleterious(0) probably_damaging(1) TCGA-55-A48X-01 6 10557142 10557142 C A GCNT2 Intron 0.12 TCGA-55-A48X-01 6 133065437 133065437 C A VNN2 3'UTR 0.15 TCGA-55-A48X-01 6 151161687 151161687 A G PLEKHG1 Silent p.K1271K 0.09 TCGA-55-A48X-01 6 153073415 153073415 C T VIP Missense_Mutation p.L35F 0.23 deleterious(0.02) possibly_damaging(0.494) TCGA-55-A48X-01 6 155761181 155761181 C T NOX3 Missense_Mutation p.E193K 0.17 tolerated(0.23) possibly_damaging(0.676) TCGA-55-A48X-01 6 157517374 157517374 G C ARID1B Missense_Mutation p.S1313T 0.20 benign(0.023) TCGA-55-A48X-01 6 159653198 159653198 T A FNDC1 Missense_Mutation p.S552T 0.20 tolerated_low_confidence(0.07) unknown(0) TCGA-55-A48X-01 6 165715131 165715135 GCGAG CGAA C6orf118 Frame_Shift_Del p.L226Ffs*7 0.12 TCGA-55-A48X-01 6 165715561 165715561 G T C6orf118 Missense_Mutation p.H84N 0.15 tolerated(1) benign(0.001) TCGA-55-A48X-01 6 32023712 32023712 C A TNXB Nonsense_Mutation p.E2795* 0.18 TCGA-55-A48X-01 6 36270140 36270140 C A PNPLA1 Silent p.S426S 0.09 TCGA-55-A48X-01 6 38885030 38885030 G T DNAH8 Missense_Mutation p.D3169Y 0.13 probably_damaging(0.983) TCGA-55-A48X-01 6 39159210 39159210 C A KCNK5 Missense_Mutation p.G319V 0.14 tolerated(0.06) benign(0.045) TCGA-55-A48X-01 6 41658498 41658498 C A TFEB Missense_Mutation p.G124V 0.16 tolerated(0.07) possibly_damaging(0.587) TCGA-55-A48X-01 6 43415620 43415620 G A ABCC10 Missense_Mutation p.G1302R 0.12 deleterious(0) probably_damaging(1) TCGA-55-A48X-01 6 45882044 45882044 C T CLIC5 Missense_Mutation p.G329E 0.10 tolerated(1) benign(0.028) TCGA-55-A48X-01 6 5109622 5109623 - C LYRM4 3'UTR 0.19 TCGA-55-A48X-01 6 55216180 55216180 G T GFRAL Missense_Mutation p.C167F 0.14 deleterious(0) probably_damaging(1) TCGA-55-A48X-01 6 55441930 55441930 G A HMGCLL1 Silent p.P48P 0.21 TCGA-55-A48X-01 6 74513014 74513014 G - CD109 Frame_Shift_Del p.S985Afs*9 0.26 TCGA-55-A48X-01 6 96651233 96651233 G C FUT9 Missense_Mutation p.V68L 0.13 tolerated(0.67) benign(0.005) TCGA-55-A48X-01 6 97052797 97052797 C T FHL5 Missense_Mutation p.P111S 0.18 deleterious(0.03) probably_damaging(0.989) TCGA-55-A48X-01 7 100417907 100417907 C A EPHB4 Missense_Mutation p.G274C 0.12 deleterious(0) probably_damaging(0.954) TCGA-55-A48X-01 7 108213775 108213775 A G DNAJB9 Missense_Mutation p.Y217C 0.14 deleterious(0.01) probably_damaging(0.935) TCGA-55-A48X-01 7 137150682 137150682 G A DGKI Missense_Mutation p.P870S 0.09 tolerated(0.05) possibly_damaging(0.776) TCGA-55-A48X-01 7 140159034 140159034 C A MKRN1 Splice_Site p.X182_splice 0.12 TCGA-55-A48X-01 7 140244378 140244378 G C DENND2A Intron 0.14 TCGA-55-A48X-01 7 142566027 142566027 C G EPHB6 Silent p.S649S 0.09 TCGA-55-A48X-01 7 142651023 142651023 G T KEL Missense_Mutation p.D315E 0.17 deleterious(0.03) probably_damaging(0.936) TCGA-55-A48X-01 7 143632349 143632349 G T OR2F2 Missense_Mutation p.W8C 0.08 tolerated(0.1) benign(0.003) TCGA-55-A48X-01 7 143632350 143632350 G T OR2F2 Missense_Mutation p.V9L 0.08 tolerated(0.21) benign(0.003) TCGA-55-A48X-01 7 143807474 143807474 G A OR2A2 Missense_Mutation p.E267K 0.10 tolerated(0.23) benign(0.038) TCGA-55-A48X-01 7 144097260 144097260 G T NOBOX Silent p.G330G 0.13 TCGA-55-A48X-01 7 14620515 14620515 A C DGKB Missense_Mutation p.D528E 0.10 deleterious(0) probably_damaging(0.999) TCGA-55-A48X-01 7 149559178 149559178 G T ZNF862 Nonsense_Mutation p.E977* 0.07 TCGA-55-A48X-01 7 154143326 154143326 A T DPP6 Missense_Mutation p.R91W 0.11 deleterious(0) probably_damaging(1) TCGA-55-A48X-01 7 15584404 15584404 C A AGMO Missense_Mutation p.M134I 0.19 tolerated(0.16) benign(0.021) TCGA-55-A48X-01 7 19184486 19184486 C A FERD3L Nonstop_Mutation p.*167Lext*? 0.12 TCGA-55-A48X-01 7 31682737 31682737 G A CCDC129 Missense_Mutation p.G611R 0.08 tolerated(0.21) benign(0.379) TCGA-55-A48X-01 7 45109547 45109547 G T CCM2 Silent p.L265L 0.17 TCGA-55-A48X-01 7 45725702 45725702 C A ADCY1 Missense_Mutation p.L739I 0.18 tolerated(0.07) probably_damaging(0.998) TCGA-55-A48X-01 7 51203935 51203935 C A COBL Missense_Mutation p.V293L 0.17 tolerated(0.14) possibly_damaging(0.514) TCGA-55-A48X-01 7 55912235 55912235 G C SEPT14 Missense_Mutation p.Q118E 0.10 deleterious(0.01) probably_damaging(0.952) TCGA-55-A48X-01 7 57187866 57187866 C A ZNF479 Missense_Mutation p.S419I 0.19 tolerated(0.09) benign(0.192) TCGA-55-A48X-01 7 66410080 66410080 C T TMEM248 Nonsense_Mutation p.Q93* 0.09 TCGA-55-A48X-01 7 87479203 87479203 G C SLC25A40 Missense_Mutation p.P109A 0.14 tolerated(0.13) probably_damaging(0.989) TCGA-55-A48X-01 7 94164828 94164828 G C CASD1 Missense_Mutation p.R279T 0.11 tolerated(0.23) benign(0.159) TCGA-55-A48X-01 8 110099811 110099811 T A TRHR Missense_Mutation p.Y24N 0.10 deleterious(0.01) possibly_damaging(0.89) TCGA-55-A48X-01 8 118159275 118159275 C A SLC30A8 Missense_Mutation p.H52N 0.13 deleterious(0) probably_damaging(0.998) TCGA-55-A48X-01 8 133898837 133898837 C T TG Missense_Mutation p.S407F 0.14 deleterious(0.05) benign(0.01) TCGA-55-A48X-01 8 144997681 144997681 C A PLEC Missense_Mutation p.R2276L 0.10 unknown(0) TCGA-55-A48X-01 8 145150923 145150923 A T CYC1 Missense_Mutation p.D106V 0.19 deleterious(0) probably_damaging(0.998) TCGA-55-A48X-01 8 17512106 17512106 C A MTUS1 Nonsense_Mutation p.E1060* 0.28 TCGA-55-A48X-01 8 21840288 21840288 C G XPO7 Missense_Mutation p.I414M 0.10 deleterious(0) benign(0.26) TCGA-55-A48X-01 8 21840309 21840309 G T XPO7 Silent p.V421V 0.12 TCGA-55-A48X-01 8 22012939 22012939 C T LGI3 Missense_Mutation p.G82R 0.09 tolerated(0.2) possibly_damaging(0.901) TCGA-55-A48X-01 8 38835598 38835598 C A HTRA4 Silent p.R300R 0.10 TCGA-55-A48X-01 8 52321897 52321897 C A PXDNL Missense_Mutation p.A763S 0.27 tolerated(0.32) benign(0.009) TCGA-55-A48X-01 8 53853266 53853266 T A NPBWR1 Missense_Mutation p.Y267N 0.12 deleterious(0) probably_damaging(0.98) TCGA-55-A48X-01 8 642483 642483 G T ERICH1 Missense_Mutation p.T100K 0.20 deleterious(0.01) possibly_damaging(0.725) TCGA-55-A48X-01 8 89053876 89053876 G C MMP16 Missense_Mutation p.P546R 0.18 tolerated(0.18) benign(0.075) TCGA-55-A48X-01 8 92982940 92982940 C A RUNX1T1 Silent p.R506R 0.14 TCGA-55-A48X-01 8 95550546 95550546 C A KIAA1429 Missense_Mutation p.D70Y 0.12 deleterious(0) probably_damaging(0.987) TCGA-55-A48X-01 9 100222730 100222730 G T TDRD7 Missense_Mutation p.D376Y 0.31 tolerated(0.27) possibly_damaging(0.759) TCGA-55-A48X-01 9 107289094 107289094 G T OR13C4 Missense_Mutation p.P133T 0.15 tolerated(0.13) benign(0.394) TCGA-55-A48X-01 9 108483931 108483931 G T TMEM38B Missense_Mutation p.G128V 0.21 tolerated(0.33) possibly_damaging(0.904) TCGA-55-A48X-01 9 120466688 120466688 G T TLR4 5'UTR 0.22 TCGA-55-A48X-01 9 125007557 125007557 C A RBM18 Nonsense_Mutation p.E131* 0.11 TCGA-55-A48X-01 9 125239577 125239578 GG TGT OR1J1 Frame_Shift_Ins p.P210Tfs*60 0.21 TCGA-55-A48X-01 9 134136355 134136355 C A FAM78A Missense_Mutation p.A236S 0.08 tolerated(0.75) benign(0.095) TCGA-55-A48X-01 9 136380645 136380645 C A TMEM8C Missense_Mutation p.A162S 0.20 tolerated(0.19) probably_damaging(0.975) TCGA-55-A48X-01 9 138387251 138387251 C A C9orf116 3'UTR 0.13 TCGA-55-A48X-01 9 21971003 21971014 CAGCCAGGTCCA - CDKN2A In_Frame_Del p.V115_A118del 0.13 TCGA-55-A48X-01 9 39178210 39178210 C G CNTNAP3 Missense_Mutation p.G229A 0.14 deleterious(0) probably_damaging(0.955) TCGA-55-A48X-01 9 4118739 4118739 C A GLIS3 Missense_Mutation p.D247Y 0.11 deleterious(0) possibly_damaging(0.808) TCGA-55-A48X-01 9 96055150 96055150 G T WNK2 Silent p.V1838V 0.44 TCGA-55-A48X-01 X 100615599 100615599 C G BTK Missense_Mutation p.E245Q 0.12 tolerated(0.28) possibly_damaging(0.674) TCGA-55-A48X-01 X 10106947 10106947 C A WWC3 Missense_Mutation p.R1019S 0.10 deleterious(0.02) possibly_damaging(0.81) TCGA-55-A48X-01 X 101909739 101909739 G T GPRASP1 Nonsense_Mutation p.E300* 0.14 TCGA-55-A48X-01 X 106046012 106046012 G T TBC1D8B 5'UTR 0.12 TCGA-55-A48X-01 X 110494160 110494160 G T CAPN6 Missense_Mutation p.F381L 0.10 deleterious(0.01) possibly_damaging(0.787) TCGA-55-A48X-01 X 117773480 117773480 G A DOCK11 Missense_Mutation p.V1362I 0.07 tolerated(0.32) benign(0.013) TCGA-55-A48X-01 X 118112367 118112367 C A LONRF3 Missense_Mutation p.H293N 0.18 tolerated(0.07) possibly_damaging(0.673) TCGA-55-A48X-01 X 119077333 119077333 C A NKAP Missense_Mutation p.R79L 0.11 tolerated(0.31) possibly_damaging(0.866) TCGA-55-A48X-01 X 119077346 119077346 G A NKAP Missense_Mutation p.R75C 0.11 tolerated(0.1) probably_damaging(0.995) TCGA-55-A48X-01 X 119249649 119249649 G T RHOXF1 Missense_Mutation p.P42T 0.12 tolerated(0.56) possibly_damaging(0.908) TCGA-55-A48X-01 X 123519821 123519821 G T TENM1 Missense_Mutation p.R1928S 0.06 tolerated(0.08) benign(0.272) TCGA-55-A48X-01 X 123838886 123838886 G C TENM1 Missense_Mutation p.A331G 0.11 deleterious(0.05) benign(0.444) TCGA-55-A48X-01 X 128922016 128922016 G T SASH3 Silent p.V41V 0.12 TCGA-55-A48X-01 X 129055266 129055266 G A UTP14A Missense_Mutation p.E351K 0.14 tolerated(0.28) benign(0.019) TCGA-55-A48X-01 X 12906277 12906277 C A TLR7 Missense_Mutation p.L884I 0.19 tolerated(0.08) benign(0.191) TCGA-55-A48X-01 X 129289203 129289203 A T AIFM1 Intron 0.17 TCGA-55-A48X-01 X 135429309 135429309 T A GPR112 Silent p.P1148P 0.10 TCGA-55-A48X-01 X 135429310 135429310 C A GPR112 Missense_Mutation p.P1149T 0.10 tolerated(1) benign(0.038) TCGA-55-A48X-01 X 135767851 135767851 C A ARHGEF6 Missense_Mutation p.Q459H 0.12 tolerated(0.21) benign(0.019) TCGA-55-A48X-01 X 142717196 142717196 C T SLITRK4 Missense_Mutation p.E577K 0.12 deleterious(0.01) probably_damaging(0.98) TCGA-55-A48X-01 X 144904772 144904772 C A SLITRK2 Missense_Mutation p.H277N 0.18 tolerated(0.34) benign(0.001) TCGA-55-A48X-01 X 149013264 149013264 C A MAGEA8 Missense_Mutation p.T73N 0.10 deleterious(0.01) probably_damaging(0.934) TCGA-55-A48X-01 X 149944724 149944724 G A CD99L2 Missense_Mutation p.A193V 0.14 deleterious(0.03) probably_damaging(0.994) TCGA-55-A48X-01 X 150844686 150844686 G T PASD1 3'UTR 0.12 TCGA-55-A48X-01 X 152225562 152225562 G T PNMA3 Missense_Mutation p.R50S 0.05 tolerated(0.06) possibly_damaging(0.544) TCGA-55-A48X-01 X 153136377 153136377 C A L1CAM Missense_Mutation p.G188C 0.09 deleterious(0) probably_damaging(1) TCGA-55-A48X-01 X 153136378 153136378 C A L1CAM Missense_Mutation p.M187I 0.09 tolerated(0.14) benign(0.401) TCGA-55-A48X-01 X 153208331 153208331 G A RENBP Silent p.A221A 0.09 TCGA-55-A48X-01 X 153223313 153223313 A T HCFC1 Missense_Mutation p.S685T 0.09 tolerated(0.16) probably_damaging(0.958) TCGA-55-A48X-01 X 153225597 153225597 G T HCFC1 Missense_Mutation p.P367Q 0.16 deleterious(0) probably_damaging(0.996) TCGA-55-A48X-01 X 153225598 153225598 G T HCFC1 Missense_Mutation p.P367T 0.16 deleterious(0) probably_damaging(0.994) TCGA-55-A48X-01 X 153421916 153421916 G C OPN1LW Missense_Mutation p.A298P 0.12 tolerated(0.42) benign(0.12) TCGA-55-A48X-01 X 153524334 153524334 C A TKTL1 Missense_Mutation p.S41Y 0.11 deleterious(0.01) possibly_damaging(0.637) TCGA-55-A48X-01 X 153539223 153539223 C T TKTL1 Silent p.S129S 0.08 TCGA-55-A48X-01 X 153539224 153539224 T A TKTL1 Missense_Mutation p.S130T 0.08 tolerated(0.08) benign(0.219) TCGA-55-A48X-01 X 153593198 153593198 C A FLNA Missense_Mutation p.G607C 0.07 deleterious(0) probably_damaging(1) TCGA-55-A48X-01 X 153608325 153608325 G T EMD Missense_Mutation p.A71S 0.10 tolerated(1) benign(0) TCGA-55-A48X-01 X 153631308 153631308 G T DNASE1L1 Missense_Mutation p.T250K 0.14 tolerated(1) benign(0.007) TCGA-55-A48X-01 X 153671038 153671038 C T GDI1 3'UTR 0.07 TCGA-55-A48X-01 X 17744444 17744444 C A NHS Missense_Mutation p.P719T 0.09 deleterious(0.01) probably_damaging(1) TCGA-55-A48X-01 X 20185763 20185763 C A RPS6KA3 Missense_Mutation p.A516S 0.06 deleterious(0.02) probably_damaging(1) TCGA-55-A48X-01 X 20185764 20185764 C A RPS6KA3 Missense_Mutation p.E515D 0.06 tolerated(0.07) probably_damaging(0.996) TCGA-55-A48X-01 X 23353286 23353286 C G PTCHD1 Silent p.V98V 0.07 TCGA-55-A48X-01 X 26212099 26212099 C A MAGEB6 Missense_Mutation p.R46S 0.07 tolerated(0.93) benign(0.022) TCGA-55-A48X-01 X 35989828 35989828 C T CXorf22 Missense_Mutation p.A699V 0.12 tolerated(0.23) benign(0.027) TCGA-55-A48X-01 X 35993838 35993838 G T CXorf22 Missense_Mutation p.V841L 0.09 tolerated(0.2) benign(0.002) TCGA-55-A48X-01 X 36091370 36091370 C A CHDC2 Missense_Mutation p.T102K 0.14 tolerated(0.15) possibly_damaging(0.816) TCGA-55-A48X-01 X 37027103 37027103 T A FAM47C Missense_Mutation p.V207E 0.09 deleterious(0) probably_damaging(0.994) TCGA-55-A48X-01 X 37028207 37028207 C A FAM47C Missense_Mutation p.P575H 0.07 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-55-A48X-01 X 38420813 38420813 G C TSPAN7 Missense_Mutation p.R5T 0.17 tolerated(0.05) benign(0.023) TCGA-55-A48X-01 X 49079435 49079435 G A CACNA1F Nonsense_Mutation p.R691* 0.21 TCGA-55-A48X-01 X 50053406 50053406 A T CCNB3 Missense_Mutation p.Q746L 0.08 tolerated(0.34) possibly_damaging(0.893) TCGA-55-A48X-01 X 5821852 5821852 C A NLGN4X Silent p.V289V 0.11 TCGA-55-A48X-01 X 65819509 65819509 G T EDA2R Silent p.A258A 0.13 TCGA-55-A48X-01 X 70464209 70464209 C A ZMYM3 Missense_Mutation p.V1075L 0.09 deleterious(0.02) probably_damaging(0.97) TCGA-55-A48X-01 X 70626589 70626589 A G TAF1 Missense_Mutation p.Y1387C 0.22 deleterious(0.01) probably_damaging(0.984) TCGA-55-A48X-01 X 73071543 73071543 C G XIST RNA 0.09 TCGA-55-A48X-01 X 73812469 73812469 T A RLIM Missense_Mutation p.R227S 0.11 tolerated(0.31) unknown(0) TCGA-55-A48X-01 X 78216154 78216154 T A P2RY10 Missense_Mutation p.I46N 0.14 deleterious(0) probably_damaging(0.95) TCGA-55-A48X-01 X 78426604 78426604 C A GPR174 Missense_Mutation p.L34I 0.17 deleterious(0.04) possibly_damaging(0.788) TCGA-55-A48X-01 X 7889855 7889855 G T PNPLA4 Missense_Mutation p.H104N 0.07 deleterious(0) probably_damaging(1) TCGA-55-A48X-01 X 89177142 89177142 C T TGIF2LX Missense_Mutation p.P20S 0.09 deleterious(0.03) probably_damaging(0.992) TCGA-55-A48Y-01 10 102747213 102747213 G C MRPL43 5'UTR 0.13 TCGA-55-A48Y-01 10 103906767 103906767 G A PPRC1 Missense_Mutation p.A1340T 0.21 tolerated(0.07) benign(0.138) TCGA-55-A48Y-01 10 104139379 104139379 G A GBF1 Missense_Mutation p.A1582T 0.17 deleterious(0.01) probably_damaging(0.954) TCGA-55-A48Y-01 10 104233340 104233340 C A TMEM180 Silent p.V313V 0.20 TCGA-55-A48Y-01 10 124921812 124921812 G A BUB3 Missense_Mutation p.E213K 0.06 deleterious(0.02) benign(0.086) TCGA-55-A48Y-01 10 128796482 128796482 C G DOCK1 Missense_Mutation p.L246V 0.11 deleterious(0) benign(0.364) TCGA-55-A48Y-01 10 12940438 12940438 C T CCDC3 Missense_Mutation p.R264H 0.20 tolerated_low_confidence(0.29) benign(0.003) TCGA-55-A48Y-01 10 13386820 13386820 G C SEPHS1 Missense_Mutation p.S44C 0.19 deleterious(0.04) benign(0.335) TCGA-55-A48Y-01 10 134261464 134261464 G A C10orf91 Missense_Mutation p.D113N 0.12 tolerated_low_confidence(0.75) benign(0.016) TCGA-55-A48Y-01 10 14894511 14894511 C G HSPA14 Missense_Mutation p.L239V 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-55-A48Y-01 10 26790110 26790110 G A APBB1IP Intron 0.20 TCGA-55-A48Y-01 10 33619658 33619658 C T NRP1 Missense_Mutation p.D76N 0.10 deleterious(0.02) probably_damaging(1) TCGA-55-A48Y-01 10 415490 415490 G A DIP2C Missense_Mutation p.S692L 0.13 tolerated(0.09) benign(0.136) TCGA-55-A48Y-01 10 5929939 5929939 C G ANKRD16 Missense_Mutation p.D136H 0.10 deleterious(0) probably_damaging(1) TCGA-55-A48Y-01 10 68940123 68940123 G A CTNNA3 Silent p.N333N 0.13 TCGA-55-A48Y-01 10 95849043 95849043 G A PLCE1 Intron 0.17 TCGA-55-A48Y-01 11 104820450 104820450 C T CASP4 Missense_Mutation p.D201N 0.09 deleterious(0) probably_damaging(1) TCGA-55-A48Y-01 11 111959708 111959708 C T SDHD Missense_Mutation p.A96V 0.17 deleterious(0.02) probably_damaging(0.975) TCGA-55-A48Y-01 11 117097941 117097941 C T PCSK7 Missense_Mutation p.G234E 0.21 deleterious(0.01) probably_damaging(0.954) TCGA-55-A48Y-01 11 117100236 117100236 C G PCSK7 Missense_Mutation p.E109Q 0.23 tolerated(0.54) benign(0.001) TCGA-55-A48Y-01 11 117100428 117100428 C T PCSK7 Missense_Mutation p.D45N 0.18 tolerated_low_confidence(0.31) benign(0.018) TCGA-55-A48Y-01 11 117162484 117162484 G A BACE1 Missense_Mutation p.R296C 0.13 deleterious(0) probably_damaging(0.995) TCGA-55-A48Y-01 11 123813640 123813640 T C OR6T1 Silent p.R302R 0.21 TCGA-55-A48Y-01 11 14276273 14276273 G C SPON1 Intron 0.14 TCGA-55-A48Y-01 11 1463777 1463777 C T BRSK2 Silent p.I203I 0.13 TCGA-55-A48Y-01 11 1972198 1972198 G T MRPL23 Silent p.V29V 0.11 TCGA-55-A48Y-01 11 44135732 44135732 C T EXT2 Intron 0.14 TCGA-55-A48Y-01 11 47381535 47381535 C T SPI1 Missense_Mutation p.E68K 0.31 tolerated(0.47) benign(0.412) TCGA-55-A48Y-01 11 55111078 55111078 G A OR4A16 Missense_Mutation p.M134I 0.09 deleterious_low_confidence(0.01) benign(0.128) TCGA-55-A48Y-01 11 55135507 55135507 G A OR4A15 Missense_Mutation p.E50K 0.16 tolerated_low_confidence(0.5) benign(0.007) TCGA-55-A48Y-01 11 57070017 57070017 G A TNKS1BP1 Silent p.S1533S 0.35 TCGA-55-A48Y-01 11 57427024 57427024 G A CLP1 Missense_Mutation p.E26K 0.10 deleterious(0.01) possibly_damaging(0.584) TCGA-55-A48Y-01 11 62396347 62396347 G A GANAB Nonsense_Mutation p.Q714* 0.09 TCGA-55-A48Y-01 11 62491460 62491460 G A HNRNPUL2 Missense_Mutation p.S226L 0.17 deleterious(0.02) benign(0.373) TCGA-55-A48Y-01 11 688009 688009 C T DEAF1 Missense_Mutation p.G189E 0.16 deleterious(0.01) possibly_damaging(0.674) TCGA-55-A48Y-01 11 71195412 71195412 C T NADSYN1 Silent p.F458F 0.16 TCGA-55-A48Y-01 11 75139580 75139580 C T KLHL35 Missense_Mutation p.E325K 0.09 tolerated(0.32) unknown(0) TCGA-55-A48Y-01 11 82895896 82895896 C T PCF11 Missense_Mutation p.S1543F 0.21 deleterious_low_confidence(0.03) benign(0.019) TCGA-55-A48Y-01 11 85622333 85622333 C T CCDC83 Missense_Mutation p.H228Y 0.27 tolerated(0.72) possibly_damaging(0.753) TCGA-55-A48Y-01 11 94113678 94113678 G C GPR83 Silent p.L303L 0.12 TCGA-55-A48Y-01 11 94759712 94759712 G C KDM4E Missense_Mutation p.E331Q 0.50 tolerated(0.12) possibly_damaging(0.843) TCGA-55-A48Y-01 12 108082391 108082391 G A PWP1 Splice_Site p.X44_splice 0.07 TCGA-55-A48Y-01 12 109182547 109182547 C T SSH1 Silent p.L789L 0.11 TCGA-55-A48Y-01 12 120653741 120653741 G A PXN Intron 0.25 TCGA-55-A48Y-01 12 122702824 122702824 C T DIABLO Missense_Mutation p.E102K 0.15 deleterious(0.02) probably_damaging(0.922) TCGA-55-A48Y-01 12 124181655 124181655 C T TCTN2 Missense_Mutation p.S472L 0.15 deleterious(0.01) benign(0.031) TCGA-55-A48Y-01 12 133433209 133433209 A T CHFR Missense_Mutation p.S370R 0.08 tolerated(0.63) benign(0.001) TCGA-55-A48Y-01 12 20874797 20874797 C G SLCO1C1 Missense_Mutation p.L279V 0.20 deleterious(0.02) possibly_damaging(0.51) TCGA-55-A48Y-01 12 27113600 27113600 G T FGFR1OP2 Intron 0.19 TCGA-55-A48Y-01 12 39047803 39047803 C T CPNE8 Missense_Mutation p.D526N 0.12 tolerated(0.09) possibly_damaging(0.627) TCGA-55-A48Y-01 12 43945713 43945713 G A ADAMTS20 Silent p.A4A 0.20 TCGA-55-A48Y-01 12 4708950 4708950 G C DYRK4 Missense_Mutation p.Q259H 0.09 deleterious(0.02) benign(0.14) TCGA-55-A48Y-01 12 47163076 47163076 C T SLC38A4 Missense_Mutation p.G479R 0.15 deleterious(0) probably_damaging(1) TCGA-55-A48Y-01 12 49952452 49952452 C T MCRS1 Missense_Mutation p.E468K 0.09 deleterious(0) probably_damaging(0.971) TCGA-55-A48Y-01 12 5153937 5153937 G C KCNA5 Missense_Mutation p.E208D 0.18 tolerated(0.18) benign(0.036) TCGA-55-A48Y-01 12 52285113 52285113 G A ANKRD33 3'UTR 0.27 TCGA-55-A48Y-01 12 53693951 53693951 G A C12orf10 Silent p.R78R 0.10 TCGA-55-A48Y-01 12 54109067 54109067 G A CALCOCO1 Nonsense_Mutation p.R435* 0.06 TCGA-55-A48Y-01 12 55523974 55523974 C T OR9K2 Missense_Mutation p.A141V 0.13 deleterious(0.01) probably_damaging(0.932) TCGA-55-A48Y-01 12 57556192 57556192 C G LRP1 Silent p.V765V 0.17 TCGA-55-A48Y-01 12 57960951 57960951 G C KIF5A Missense_Mutation p.D182H 0.17 deleterious(0.04) probably_damaging(0.99) TCGA-55-A48Y-01 12 772527 772527 C T NINJ2 Silent p.E46E 0.19 TCGA-55-A48Y-01 12 86373447 86373447 C G MGAT4C Missense_Mutation p.E353Q 0.27 tolerated(0.24) benign(0.222) TCGA-55-A48Y-01 13 100188902 100188902 G A TM9SF2 Missense_Mutation p.E168K 0.23 tolerated(0.21) benign(0.21) TCGA-55-A48Y-01 13 113212686 113212686 T A TUBGCP3 Missense_Mutation p.R124S 0.12 tolerated(0.55) benign(0.007) TCGA-55-A48Y-01 13 29600251 29600251 C T MTUS2 Silent p.F482F 0.08 TCGA-55-A48Y-01 13 29600259 29600259 C T MTUS2 Missense_Mutation p.S485F 0.08 deleterious(0.03) benign(0.022) TCGA-55-A48Y-01 13 32848978 32848978 G A FRY Splice_Site p.X2713_splice 0.12 TCGA-55-A48Y-01 13 32929161 32929161 G A BRCA2 Missense_Mutation p.E2391K 0.16 tolerated(0.07) benign(0.199) TCGA-55-A48Y-01 13 58208573 58208573 C T PCDH17 Silent p.N631N 0.08 TCGA-55-A48Y-01 13 75861116 75861116 G A TBC1D4 Missense_Mutation p.L1237F 0.12 tolerated(0.14) benign(0.005) TCGA-55-A48Y-01 13 75898436 75898436 G C TBC1D4 Missense_Mutation p.S712C 0.11 deleterious(0.01) possibly_damaging(0.541) TCGA-55-A48Y-01 13 93518717 93518717 C G GPC5 3'UTR 0.15 TCGA-55-A48Y-01 14 103406192 103406192 C G CDC42BPB Missense_Mutation p.E1562Q 0.10 deleterious(0.05) possibly_damaging(0.467) TCGA-55-A48Y-01 14 104056517 104056517 G A APOPT1 Splice_Site p.X172_splice 0.16 TCGA-55-A48Y-01 14 105179314 105179314 C TG INF2 Frame_Shift_Ins p.L921Afs*59 0.19 TCGA-55-A48Y-01 14 105716498 105716498 C T BTBD6 Missense_Mutation p.T316M 0.10 deleterious(0) probably_damaging(0.945) TCGA-55-A48Y-01 14 24464291 24464291 C T DHRS4L2 Silent p.V119V 0.13 TCGA-55-A48Y-01 14 35182575 35182575 C T CFL2 Missense_Mutation p.D66N 0.17 tolerated(0.11) benign(0.205) TCGA-55-A48Y-01 14 35761576 35761576 G T PSMA6 5'UTR 0.12 TCGA-55-A48Y-01 14 36768268 36768268 G A MBIP 3'UTR 0.33 TCGA-55-A48Y-01 14 51223742 51223742 G A NIN Nonsense_Mutation p.Q1336* 0.12 TCGA-55-A48Y-01 14 66975165 66975165 C T GPHN 5'UTR 0.20 TCGA-55-A48Y-01 14 73566132 73566132 C G RBM25 Silent p.L258L 0.12 TCGA-55-A48Y-01 14 75230537 75230537 C G YLPM1 Silent p.L115L 0.11 TCGA-55-A48Y-01 14 75230733 75230733 C T YLPM1 Nonsense_Mutation p.Q181* 0.22 TCGA-55-A48Y-01 14 75368921 75368921 A T DLST Missense_Mutation p.Y417F 0.21 tolerated(0.06) benign(0.014) TCGA-55-A48Y-01 14 75745594 75745594 G A FOS 5'UTR 0.25 TCGA-55-A48Y-01 14 91247235 91247235 C G TTC7B Missense_Mutation p.E98Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-55-A48Y-01 14 93412689 93412689 G C ITPK1 Missense_Mutation p.I296M 0.05 deleterious(0.03) possibly_damaging(0.835) TCGA-55-A48Y-01 15 101598211 101598211 C T LRRK1 Missense_Mutation p.S1515L 0.09 tolerated(0.05) benign(0.164) TCGA-55-A48Y-01 15 101814877 101814877 C G VIMP Missense_Mutation p.E110Q 0.18 tolerated(0.24) benign(0.212) TCGA-55-A48Y-01 15 25605596 25605596 C T UBE3A Missense_Mutation p.D566N 0.12 deleterious(0) probably_damaging(0.983) TCGA-55-A48Y-01 15 28499514 28499514 G C HERC2 Missense_Mutation p.L1008V 0.11 possibly_damaging(0.76) TCGA-55-A48Y-01 15 33261484 33261484 C T FMN1 Silent p.Q583Q 0.15 TCGA-55-A48Y-01 15 34118948 34118948 A C RYR3 Missense_Mutation p.N3747T 0.10 probably_damaging(0.997) TCGA-55-A48Y-01 15 40631793 40631793 C T C15orf52 Missense_Mutation p.E95K 0.20 deleterious(0) probably_damaging(0.999) TCGA-55-A48Y-01 15 42731607 42731607 G A ZNF106 Missense_Mutation p.P1367S 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-55-A48Y-01 15 42731855 42731855 G A ZNF106 Missense_Mutation p.S1284L 0.10 tolerated(0.2) benign(0.008) TCGA-55-A48Y-01 15 43531388 43531388 C T TGM5 Missense_Mutation p.D360N 0.13 deleterious(0) probably_damaging(1) TCGA-55-A48Y-01 15 43531445 43531445 C T TGM5 Missense_Mutation p.E341K 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-55-A48Y-01 15 44630506 44630506 C T CASC4 Missense_Mutation p.L265F 0.21 tolerated(0.46) benign(0.027) TCGA-55-A48Y-01 15 52613604 52613604 A G MYO5A Missense_Mutation p.Y1610H 0.15 deleterious(0) probably_damaging(0.999) TCGA-55-A48Y-01 15 52613643 52613643 C G MYO5A Missense_Mutation p.E1597Q 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-55-A48Y-01 15 75013088 75013088 G C CYP1A1 Missense_Mutation p.F427L 0.07 deleterious(0.03) probably_damaging(1) TCGA-55-A48Y-01 15 76633474 76633474 G A ISL2 Splice_Site p.X266_splice 0.14 TCGA-55-A48Y-01 15 78765852 78765852 C T IREB2 Intron 0.38 TCGA-55-A48Y-01 15 89849240 89849240 G C FANCI Missense_Mutation p.E1118Q 0.21 tolerated(0.2) benign(0.033) TCGA-55-A48Y-01 15 93499827 93499827 C T CHD2 Nonsense_Mutation p.Q650* 0.18 TCGA-55-A48Y-01 16 10567815 10567815 G C ATF7IP2 Missense_Mutation p.L506F 0.18 deleterious(0.02) benign(0.164) TCGA-55-A48Y-01 16 14711477 14711477 C T PARN Missense_Mutation p.G120R 0.25 deleterious(0) probably_damaging(0.987) TCGA-55-A48Y-01 16 1616226 1616226 C T IFT140 Missense_Mutation p.D613N 0.08 tolerated(0.16) benign(0.163) TCGA-55-A48Y-01 16 2052214 2052214 C T ZNF598 Silent p.R296R 0.40 TCGA-55-A48Y-01 16 2089978 2089978 G A NTHL1 Missense_Mutation p.R296C 0.16 deleterious(0.01) possibly_damaging(0.696) TCGA-55-A48Y-01 16 2130194 2130194 G T TSC2 Silent p.L1142L 0.05 TCGA-55-A48Y-01 16 22134947 22134947 G A VWA3A Missense_Mutation p.R484K 0.12 tolerated(0.7) benign(0.004) TCGA-55-A48Y-01 16 2258891 2258891 C T MLST8 3'UTR 0.04 TCGA-55-A48Y-01 16 2335497 2335497 G A ABCA3 Silent p.L1143L 0.27 TCGA-55-A48Y-01 16 24979984 24979984 C T ARHGAP17 Missense_Mutation p.E128K 0.21 deleterious(0) probably_damaging(0.93) TCGA-55-A48Y-01 16 25268346 25268346 G C ZKSCAN2 Missense_Mutation p.L35V 0.16 tolerated(0.35) benign(0.002) TCGA-55-A48Y-01 16 28845984 28845984 G A ATXN2L Missense_Mutation p.M801I 0.09 deleterious(0.03) benign(0.14) TCGA-55-A48Y-01 16 30387149 30387149 G C MYLPF Missense_Mutation p.K4N 0.20 deleterious(0) probably_damaging(0.996) TCGA-55-A48Y-01 16 30387757 30387757 G A MYLPF Silent p.V62V 0.11 TCGA-55-A48Y-01 16 30387764 30387764 G A MYLPF Missense_Mutation p.E65K 0.12 tolerated(0.18) benign(0.012) TCGA-55-A48Y-01 16 50349474 50349474 C A BRD7 3'Flank 0.19 TCGA-55-A48Y-01 16 55601447 55601447 G A CAPNS2 3'UTR 0.23 TCGA-55-A48Y-01 16 57081464 57081464 G A NLRC5 Missense_Mutation p.E1116K 0.19 deleterious(0.04) benign(0.046) TCGA-55-A48Y-01 16 67281374 67281374 C G FHOD1 5'UTR 0.43 TCGA-55-A48Y-01 16 67685338 67685338 C A RLTPR Missense_Mutation p.P783Q 0.21 deleterious(0.01) possibly_damaging(0.682) TCGA-55-A48Y-01 16 69353393 69353393 C T VPS4A Silent p.F189F 0.13 TCGA-55-A48Y-01 16 70180045 70180045 C G PDPR Missense_Mutation p.L626V 0.27 tolerated(0.93) benign(0.128) TCGA-55-A48Y-01 16 70601431 70601431 G A SF3B3 Missense_Mutation p.E982K 0.15 deleterious(0) probably_damaging(1) TCGA-55-A48Y-01 17 10346689 10346689 G A MYH4 3'UTR 0.13 TCGA-55-A48Y-01 17 10399750 10399750 C T MYH1 Silent p.K1591K 0.18 TCGA-55-A48Y-01 17 10447414 10447414 T A MYH2 Intron 0.22 TCGA-55-A48Y-01 17 11604447 11604447 A T DNAH9 Silent p.I1678I 0.18 TCGA-55-A48Y-01 17 2235650 2235650 C G TSR1 Missense_Mutation p.E437Q 0.22 tolerated(0.14) benign(0.258) TCGA-55-A48Y-01 17 26680738 26680738 G A POLDIP2 Missense_Mutation p.R140C 0.05 deleterious(0) probably_damaging(0.997) TCGA-55-A48Y-01 17 28537620 28537620 G A SLC6A4 Silent p.F454F 0.11 TCGA-55-A48Y-01 17 31099813 31099813 G C MYO1D Missense_Mutation p.F204L 0.16 deleterious(0) probably_damaging(0.988) TCGA-55-A48Y-01 17 39553557 39553557 G T KRT31 Silent p.R79R 0.17 TCGA-55-A48Y-01 17 43181178 43181178 C G NMT1 Missense_Mutation p.F422L 0.21 tolerated(0.09) possibly_damaging(0.85) TCGA-55-A48Y-01 17 43192579 43192579 C T PLCD3 Silent p.L531L 0.30 TCGA-55-A48Y-01 17 43214493 43214493 G C ACBD4 Silent p.L134L 0.11 TCGA-55-A48Y-01 17 45821717 45821717 G A TBX21 Missense_Mutation p.E309K 0.05 deleterious(0) probably_damaging(0.995) TCGA-55-A48Y-01 17 45915392 45915392 G A SCRN2 Intron 0.15 TCGA-55-A48Y-01 17 46022060 46022060 G C PNPO Missense_Mutation p.E114D 0.09 tolerated(0.24) benign(0.004) TCGA-55-A48Y-01 17 62796460 62796460 C T PLEKHM1P RNA 0.11 TCGA-55-A48Y-01 17 73206069 73206069 C T NUP85 Silent p.S93S 0.09 TCGA-55-A48Y-01 17 73317779 73317779 G T GRB2 Missense_Mutation p.N143K 0.23 tolerated(1) benign(0.004) TCGA-55-A48Y-01 17 74283961 74283961 C T QRICH2 Silent p.R1106R 0.26 TCGA-55-A48Y-01 17 80211091 80211091 C G CSNK1D Missense_Mutation p.K122N 0.07 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-55-A48Y-01 17 80828158 80828158 G - TBCD Frame_Shift_Del p.G460Afs*24 0.15 TCGA-55-A48Y-01 18 2589205 2589205 G A NDC80 Missense_Mutation p.D256N 0.21 tolerated(0.08) benign(0.002) TCGA-55-A48Y-01 18 2924412 2924412 C T LPIN2 Missense_Mutation p.D691N 0.15 deleterious(0) probably_damaging(0.995) TCGA-55-A48Y-01 18 32949447 32949447 C T ZNF396 Nonsense_Mutation p.W247* 0.12 TCGA-55-A48Y-01 18 33552773 33552773 G T C18orf21 Intron 0.19 TCGA-55-A48Y-01 18 40854209 40854209 A G SYT4 Missense_Mutation p.I62T 0.16 deleterious(0) probably_damaging(0.997) TCGA-55-A48Y-01 18 44603749 44603749 G A KATNAL2 Missense_Mutation p.M304I 0.23 deleterious(0.02) probably_damaging(0.968) TCGA-55-A48Y-01 18 5291654 5291654 G A ZBTB14 Nonsense_Mutation p.Q185* 0.09 TCGA-55-A48Y-01 18 52946856 52946856 T C TCF4 Missense_Mutation p.Y296C 0.18 deleterious(0) probably_damaging(0.994) TCGA-55-A48Y-01 18 56171335 56171335 C T ALPK2 Silent p.P2025P 0.10 TCGA-55-A48Y-01 18 61558837 61558837 G C SERPINB2 Missense_Mutation p.Q53H 0.18 deleterious(0) probably_damaging(0.984) TCGA-55-A48Y-01 18 66351675 66351675 C T TMX3 Missense_Mutation p.E262K 0.17 tolerated(0.16) benign(0.097) TCGA-55-A48Y-01 18 74649173 74649173 G C ZNF236 Silent p.S1550S 0.23 TCGA-55-A48Y-01 19 10132087 10132087 G C RDH8 Silent p.V251V 0.15 TCGA-55-A48Y-01 19 10403724 10403724 G C ICAM5 Missense_Mutation p.E423Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-A48Y-01 19 11024580 11024580 G A CARM1 Missense_Mutation p.D233N 0.20 tolerated(0.14) benign(0.005) TCGA-55-A48Y-01 19 11097617 11097617 C T SMARCA4 Missense_Mutation p.S266L 0.22 benign(0.039) TCGA-55-A48Y-01 19 11101925 11101925 G A SMARCA4 Missense_Mutation p.E449K 0.21 probably_damaging(0.995) TCGA-55-A48Y-01 19 11436212 11436212 C T RAB3D Silent p.Q174Q 0.17 TCGA-55-A48Y-01 19 14015691 14015691 C G C19orf57 Missense_Mutation p.K5N 0.14 deleterious(0) benign(0.031) TCGA-55-A48Y-01 19 1440453 1440453 C G RPS15 Missense_Mutation p.L144V 0.20 deleterious(0.01) possibly_damaging(0.521) TCGA-55-A48Y-01 19 14830020 14830020 C A ZNF333 Missense_Mutation p.F627L 0.19 deleterious(0) possibly_damaging(0.453) TCGA-55-A48Y-01 19 15281176 15281176 G A NOTCH3 Missense_Mutation p.R1694W 0.09 deleterious(0) probably_damaging(0.983) TCGA-55-A48Y-01 19 15281228 15281228 G A NOTCH3 Silent p.F1676F 0.06 TCGA-55-A48Y-01 19 15839756 15839756 C G OR10H2 Silent p.A301A 0.08 TCGA-55-A48Y-01 19 19369411 19369411 G A HAPLN4 Silent p.N246N 0.22 TCGA-55-A48Y-01 19 19371762 19371762 C A HAPLN4 Missense_Mutation p.R115L 0.13 deleterious(0) probably_damaging(0.999) TCGA-55-A48Y-01 19 35827001 35827001 C G CD22 Missense_Mutation p.L159V 0.13 tolerated(0.37) possibly_damaging(0.498) TCGA-55-A48Y-01 19 36431077 36431077 C T LRFN3 Silent p.P250P 0.18 TCGA-55-A48Y-01 19 38707044 38707044 C G DPF1 Splice_Site p.X270_splice 0.14 TCGA-55-A48Y-01 19 39125691 39125691 G C EIF3K Missense_Mutation p.Q186H 0.14 tolerated(0.54) benign(0.062) TCGA-55-A48Y-01 19 40886386 40886386 G C HIPK4 Silent p.L504L 0.10 TCGA-55-A48Y-01 19 42474669 42474669 C G ATP1A3 Missense_Mutation p.K776N 0.11 deleterious(0.01) possibly_damaging(0.725) TCGA-55-A48Y-01 19 44832119 44832119 G A ZNF112 Nonsense_Mutation p.Q737* 0.06 TCGA-55-A48Y-01 19 49464096 49464096 C G BAX Missense_Mutation p.I133M 0.13 deleterious(0) probably_damaging(0.956) TCGA-55-A48Y-01 19 50031867 50031867 T A RCN3 Missense_Mutation p.D46E 0.18 tolerated(0.42) benign(0.036) TCGA-55-A48Y-01 19 51021236 51021236 G A LRRC4B Silent p.I578I 0.16 TCGA-55-A48Y-01 19 56953763 56953763 C G ZNF667 Missense_Mutation p.E201Q 0.17 tolerated(0.11) benign(0.305) TCGA-55-A48Y-01 19 57027713 57027713 C G ZNF471 Missense_Mutation p.Q35E 0.09 deleterious(0) possibly_damaging(0.523) TCGA-55-A48Y-01 19 57646914 57646914 G A ZIM3 Missense_Mutation p.S264L 0.09 deleterious(0) probably_damaging(0.981) TCGA-55-A48Y-01 19 9225957 9225957 C T OR7G1 Silent p.L161L 0.11 TCGA-55-A48Y-01 19 9407341 9407341 C T ZNF699 Missense_Mutation p.E247K 0.11 tolerated(0.22) possibly_damaging(0.67) TCGA-55-A48Y-01 19 9407485 9407485 C G ZNF699 Missense_Mutation p.E199Q 0.09 tolerated(0.2) benign(0.074) TCGA-55-A48Y-01 1 100889855 100889855 C G CDC14A Missense_Mutation p.F129L 0.09 deleterious(0) probably_damaging(0.945) TCGA-55-A48Y-01 1 10336455 10336455 G A KIF1B Silent p.L339L 0.12 TCGA-55-A48Y-01 1 145299900 145299900 C T NBPF10 Nonsense_Mutation p.Q317* 0.10 TCGA-55-A48Y-01 1 149857721 149857721 C G HIST2H2BE 3'UTR 0.26 TCGA-55-A48Y-01 1 150531917 150531917 G T ADAMTSL4 Missense_Mutation p.R973L 0.11 deleterious(0.04) possibly_damaging(0.491) TCGA-55-A48Y-01 1 151020365 151020365 G A C1orf56 Silent p.L14L 0.11 TCGA-55-A48Y-01 1 151020762 151020762 G T C1orf56 Nonsense_Mutation p.E147* 0.10 TCGA-55-A48Y-01 1 152329270 152329270 G A FLG2 Missense_Mutation p.S331L 0.11 unknown(0) TCGA-55-A48Y-01 1 154313436 154313436 G A ATP8B2 Missense_Mutation p.E414K 0.20 deleterious(0) possibly_damaging(0.687) TCGA-55-A48Y-01 1 158815707 158815707 G A MNDA Missense_Mutation p.E301K 0.11 tolerated(1) benign(0) TCGA-55-A48Y-01 1 161277071 161277071 C T MPZ Missense_Mutation p.E71K 0.23 deleterious(0.01) benign(0.436) TCGA-55-A48Y-01 1 162335084 162335084 G A NOS1AP Intron 0.16 TCGA-55-A48Y-01 1 171289034 171289034 G A FMO4 Missense_Mutation p.E24K 0.18 deleterious(0) probably_damaging(0.997) TCGA-55-A48Y-01 1 180804133 180804133 G C XPR1 Missense_Mutation p.E420Q 0.06 deleterious(0.05) benign(0.374) TCGA-55-A48Y-01 1 183536461 183536461 G A NCF2 Missense_Mutation p.H245Y 0.14 deleterious(0.05) benign(0.087) TCGA-55-A48Y-01 1 19523740 19523740 C T UBR4 Missense_Mutation p.D305N 0.09 probably_damaging(0.937) TCGA-55-A48Y-01 1 200376956 200376956 G C ZNF281 Missense_Mutation p.F626L 0.12 deleterious(0.01) probably_damaging(0.97) TCGA-55-A48Y-01 1 200730028 200730028 C G CAMSAP2 Missense_Mutation p.I67M 0.16 tolerated(0.16) possibly_damaging(0.726) TCGA-55-A48Y-01 1 200959320 200959320 G A KIF21B Silent p.I992I 0.06 TCGA-55-A48Y-01 1 200960101 200960101 G C KIF21B Missense_Mutation p.I877M 0.08 tolerated(0.32) benign(0.321) TCGA-55-A48Y-01 1 201869259 201869259 C T LMOD1 Silent p.Q294Q 0.09 TCGA-55-A48Y-01 1 204125416 204125416 C T REN Missense_Mutation p.E284K 0.13 tolerated(1) benign(0.014) TCGA-55-A48Y-01 1 204131252 204131252 C T REN Silent p.L46L 0.11 TCGA-55-A48Y-01 1 204131262 204131262 C T REN Missense_Mutation p.R43Q 0.14 deleterious(0.02) possibly_damaging(0.719) TCGA-55-A48Y-01 1 204379707 204379707 G A PPP1R15B Missense_Mutation p.S278L 0.08 tolerated(0.05) possibly_damaging(0.638) TCGA-55-A48Y-01 1 205241022 205241022 G A TMCC2 Missense_Mutation p.V634M 0.18 deleterious(0.02) benign(0.189) TCGA-55-A48Y-01 1 216420144 216420144 T A USH2A Silent p.S864S 0.14 TCGA-55-A48Y-01 1 224468875 224468875 C T NVL Missense_Mutation p.E638K 0.09 deleterious(0) probably_damaging(0.991) TCGA-55-A48Y-01 1 226925194 226925194 C G ITPKB 5'UTR 0.15 TCGA-55-A48Y-01 1 232596704 232596704 G A SIPA1L2 Silent p.I1008I 0.11 TCGA-55-A48Y-01 1 236187491 236187491 C T NID1 Silent p.Q669Q 0.11 TCGA-55-A48Y-01 1 236228172 236228172 C G NID1 Missense_Mutation p.D70H 0.14 tolerated(0.09) benign(0.401) TCGA-55-A48Y-01 1 245861575 245861575 G C KIF26B Missense_Mutation p.E1998Q 0.10 tolerated(0.08) unknown(0) TCGA-55-A48Y-01 1 248059574 248059574 G A OR2W3 Missense_Mutation p.R229Q 0.18 tolerated(0.26) benign(0.015) TCGA-55-A48Y-01 1 2541235 2541235 C G MMEL1 Missense_Mutation p.E110Q 0.19 deleterious(0.04) benign(0.137) TCGA-55-A48Y-01 1 26695073 26695073 C A ZNF683 Intron 0.10 TCGA-55-A48Y-01 1 27240319 27240319 C T NR0B2 Missense_Mutation p.R38H 0.16 tolerated(0.43) benign(0.001) TCGA-55-A48Y-01 1 28362171 28362171 G C EYA3 Nonsense_Mutation p.S82* 0.08 TCGA-55-A48Y-01 1 31349877 31349877 G C SDC3 Missense_Mutation p.S131C 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-55-A48Y-01 1 32203063 32203063 C T BAI2 Silent p.L982L 0.16 TCGA-55-A48Y-01 1 32203928 32203928 C G BAI2 Splice_Site p.X882_splice 0.12 TCGA-55-A48Y-01 1 35351143 35351143 G C DLGAP3 Missense_Mutation p.P617R 0.15 tolerated(0.13) probably_damaging(0.996) TCGA-55-A48Y-01 1 40307341 40307341 G C TRIT1 3'UTR 0.19 TCGA-55-A48Y-01 1 41541114 41541114 G C SCMH1 Missense_Mutation p.P242R 0.16 tolerated(0.06) probably_damaging(0.917) TCGA-55-A48Y-01 1 42047774 42047774 C T HIVEP3 Missense_Mutation p.E899K 0.10 probably_damaging(0.993) TCGA-55-A48Y-01 1 42047885 42047885 C T HIVEP3 Missense_Mutation p.E862K 0.11 probably_damaging(0.993) TCGA-55-A48Y-01 1 43004901 43004901 C T CCDC30 Missense_Mutation p.P59S 0.23 tolerated(0.12) benign(0.273) TCGA-55-A48Y-01 1 46669048 46669048 G A LURAP1 5'UTR 0.21 TCGA-55-A48Y-01 1 46976807 46976807 G T DMBX1 Silent p.L178L 0.08 TCGA-55-A48Y-01 1 47765638 47765638 G C STIL Missense_Mutation p.L214V 0.29 deleterious(0) probably_damaging(1) TCGA-55-A48Y-01 1 47765695 47765695 G C STIL Missense_Mutation p.L195V 0.13 tolerated(1) benign(0.041) TCGA-55-A48Y-01 1 53513649 53513649 C G SCP2 Intron 0.14 TCGA-55-A48Y-01 1 54675622 54675622 C G MRPL37 Missense_Mutation p.S217C 0.19 tolerated(0.06) probably_damaging(0.984) TCGA-55-A48Y-01 1 54675729 54675729 C T MRPL37 Silent p.L253L 0.18 TCGA-55-A48Y-01 1 64643911 64643911 G C ROR1 Missense_Mutation p.W729C 0.22 deleterious(0) probably_damaging(1) TCGA-55-A48Y-01 1 6479379 6479379 C T HES2 Missense_Mutation p.E55K 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-A48Y-01 1 6640757 6640757 C T ZBTB48 Silent p.L30L 0.09 TCGA-55-A48Y-01 1 7980948 7980948 C G TNFRSF9 Missense_Mutation p.D239H 0.22 deleterious(0) probably_damaging(0.985) TCGA-55-A48Y-01 1 89477703 89477703 C G GBP3 Missense_Mutation p.E292D 0.30 tolerated(0.09) benign(0.113) TCGA-55-A48Y-01 20 21328844 21328844 G C XRN2 Missense_Mutation p.E576Q 0.24 tolerated(0.54) benign(0.028) TCGA-55-A48Y-01 20 31022685 31022685 C T ASXL1 Silent p.L724L 0.12 TCGA-55-A48Y-01 20 34219252 34219252 C G CPNE1 Missense_Mutation p.E252Q 0.18 deleterious(0.03) benign(0.141) TCGA-55-A48Y-01 20 36431278 36431278 G T CTNNBL1 Missense_Mutation p.K347N 0.13 deleterious(0) possibly_damaging(0.559) TCGA-55-A48Y-01 20 36640755 36640755 C G TTI1 Missense_Mutation p.L488F 0.22 deleterious(0) possibly_damaging(0.73) TCGA-55-A48Y-01 20 44639851 44639851 C T MMP9 Missense_Mutation p.S240F 0.19 deleterious(0.05) possibly_damaging(0.892) TCGA-55-A48Y-01 20 46265495 46265495 A G NCOA3 Missense_Mutation p.T789A 0.14 tolerated(0.08) benign(0.001) TCGA-55-A48Y-01 20 61488812 61488812 C G TCFL5 Missense_Mutation p.Q391H 0.20 tolerated(0.07) benign(0.048) TCGA-55-A48Y-01 20 62372751 62372751 G C SLC2A4RG Missense_Mutation p.E104Q 0.08 deleterious(0) probably_damaging(0.995) TCGA-55-A48Y-01 21 27121396 27121396 C A GABPA Missense_Mutation p.T91N 0.17 deleterious(0.01) benign(0.241) TCGA-55-A48Y-01 21 37617530 37617530 G C DOPEY2 Silent p.L1084L 0.14 TCGA-55-A48Y-01 21 43504329 43504329 G T UMODL1 Missense_Mutation p.R152L 0.16 tolerated(0.67) benign(0.104) TCGA-55-A48Y-01 21 45172503 45172503 G C PDXK Missense_Mutation p.Q205H 0.26 tolerated(0.55) benign(0.012) TCGA-55-A48Y-01 21 46595734 46595734 C T ADARB1 Nonsense_Mutation p.Q40* 0.07 TCGA-55-A48Y-01 21 47422260 47422260 C G COL6A1 Nonsense_Mutation p.S732* 0.23 TCGA-55-A48Y-01 22 18300400 18300400 G A MICAL3 Missense_Mutation p.P1676L 0.19 benign(0.357) TCGA-55-A48Y-01 22 20843492 20843492 C G KLHL22 Missense_Mutation p.E3Q 0.22 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-55-A48Y-01 22 21344700 21344700 C T LZTR1 Missense_Mutation p.P226L 0.17 deleterious(0.01) probably_damaging(1) TCGA-55-A48Y-01 22 21385705 21385705 C T SLC7A4 Missense_Mutation p.V133M 0.14 tolerated(0.1) benign(0.212) TCGA-55-A48Y-01 22 22868411 22868411 G A ZNF280A Missense_Mutation p.P515L 0.08 tolerated(0.66) benign(0.109) TCGA-55-A48Y-01 22 27026404 27026404 C G CRYBA4 Missense_Mutation p.H182D 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-55-A48Y-01 22 29195125 29195126 CT - XBP1 Frame_Shift_Del p.R81Sfs*16 0.19 TCGA-55-A48Y-01 22 36912774 36912774 C T EIF3D Missense_Mutation p.E352K 0.17 tolerated(0.19) possibly_damaging(0.516) TCGA-55-A48Y-01 22 37603666 37603666 C A SSTR3 Silent p.L59L 0.15 TCGA-55-A48Y-01 2 113513577 113513577 C G CKAP2L Missense_Mutation p.K457N 0.10 deleterious(0.03) possibly_damaging(0.903) TCGA-55-A48Y-01 2 1243512 1243512 G A SNTG2 Missense_Mutation p.M284I 0.20 tolerated(0.43) benign(0.004) TCGA-55-A48Y-01 2 132010574 132010574 C T POTEE Silent p.A560A 0.09 TCGA-55-A48Y-01 2 150435959 150435959 C T MMADHC Missense_Mutation p.V120M 0.22 tolerated(0.15) possibly_damaging(0.839) TCGA-55-A48Y-01 2 152316581 152316581 C T RIF1 Missense_Mutation p.S1008L 0.21 deleterious(0.02) benign(0.071) TCGA-55-A48Y-01 2 162280634 162280634 G A TBR1 Missense_Mutation p.E649K 0.18 deleterious(0.01) benign(0.046) TCGA-55-A48Y-01 2 169764406 169764406 C G G6PC2 Silent p.L295L 0.13 TCGA-55-A48Y-01 2 169764632 169764632 C T G6PC2 3'UTR 0.14 TCGA-55-A48Y-01 2 178098954 178098954 C T NFE2L2 Missense_Mutation p.G31R 0.29 deleterious(0) probably_damaging(0.972) TCGA-55-A48Y-01 2 179395885 179395885 C T TTN Missense_Mutation p.D35153N 0.20 TCGA-55-A48Y-01 2 209302580 209302580 C T PTH2R Silent p.L129L 0.21 TCGA-55-A48Y-01 2 21242606 21242606 G T APOB Silent p.T996T 0.38 TCGA-55-A48Y-01 2 215821435 215821435 T C ABCA12 Missense_Mutation p.Y2062C 0.26 tolerated(0.13) benign(0.02) TCGA-55-A48Y-01 2 218947866 218947866 G C RUFY4 Missense_Mutation p.Q483H 0.18 deleterious(0.01) benign(0.288) TCGA-55-A48Y-01 2 228883790 228883790 C G SPHKAP Missense_Mutation p.E594Q 0.10 tolerated(0.55) benign(0.005) TCGA-55-A48Y-01 2 231177334 231177334 G C SP140 Missense_Mutation p.E847Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-55-A48Y-01 2 234669540 234669540 C A UGT1A8 Intron 0.11 TCGA-55-A48Y-01 2 241621949 241621949 G A AQP12B Silent p.L102L 0.20 TCGA-55-A48Y-01 2 242135370 242135370 C T ANO7 Intron 0.20 TCGA-55-A48Y-01 2 242138775 242138775 C T ANO7 Silent p.L172L 0.11 TCGA-55-A48Y-01 2 242141634 242141634 C T ANO7 Missense_Mutation p.P267L 0.17 tolerated(0.23) benign(0.008) TCGA-55-A48Y-01 2 242347008 242347008 C T FARP2 Nonsense_Mutation p.Q130* 0.12 TCGA-55-A48Y-01 2 25043713 25043713 C T ADCY3 Missense_Mutation p.M1044I 0.18 tolerated(1) benign(0.019) TCGA-55-A48Y-01 2 25851078 25851078 G C DTNB Missense_Mutation p.I108M 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-55-A48Y-01 2 55522847 55522847 C T CCDC88A Missense_Mutation p.E1812K 0.16 tolerated_low_confidence(0.05) probably_damaging(0.998) TCGA-55-A48Y-01 2 63223867 63223867 G A EHBP1 Silent p.L1094L 0.15 TCGA-55-A48Y-01 2 74146732 74146732 C T ACTG2 3'UTR 0.19 TCGA-55-A48Y-01 2 74604834 74604834 C G DCTN1 Missense_Mutation p.G100A 0.18 tolerated(0.11) benign(0.146) TCGA-55-A48Y-01 2 86361965 86361965 C T PTCD3 Nonsense_Mutation p.Q545* 0.07 TCGA-55-A48Y-01 3 107491490 107491490 G A BBX Missense_Mutation p.E308K 0.15 tolerated(0.07) probably_damaging(0.998) TCGA-55-A48Y-01 3 112324216 112324216 T C CCDC80 3'UTR 0.20 TCGA-55-A48Y-01 3 121527778 121527778 C G IQCB1 Missense_Mutation p.E158Q 0.29 tolerated(1) benign(0.001) TCGA-55-A48Y-01 3 132233479 132233479 C G DNAJC13 Missense_Mutation p.S1817C 0.16 tolerated(0.07) benign(0.246) TCGA-55-A48Y-01 3 136068169 136068169 C T STAG1 Missense_Mutation p.M1034I 0.13 tolerated(0.18) benign(0.05) TCGA-55-A48Y-01 3 136183796 136183796 C T STAG1 Missense_Mutation p.E414K 0.16 deleterious(0) benign(0.175) TCGA-55-A48Y-01 3 136573387 136573387 C T SLC35G2 Missense_Mutation p.H29Y 0.15 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-55-A48Y-01 3 158390331 158390331 C T LXN 5'UTR 0.20 TCGA-55-A48Y-01 3 17549980 17549980 G C TBC1D5 Missense_Mutation p.S28C 0.07 tolerated_low_confidence(0.06) possibly_damaging(0.566) TCGA-55-A48Y-01 3 186502391 186502391 G T EIF4A2 Missense_Mutation p.M38I 0.14 tolerated(0.06) benign(0.107) TCGA-55-A48Y-01 3 197639596 197639596 C G IQCG Missense_Mutation p.E305Q 0.16 deleterious(0) probably_damaging(0.998) TCGA-55-A48Y-01 3 32766952 32766952 G C CNOT10 Missense_Mutation p.L351F 0.13 tolerated(0.08) possibly_damaging(0.809) TCGA-55-A48Y-01 3 32932497 32932497 G A TRIM71 Missense_Mutation p.D601N 0.13 deleterious(0.02) benign(0.029) TCGA-55-A48Y-01 3 37725438 37725438 G T ITGA9 Missense_Mutation p.D667Y 0.08 deleterious(0) probably_damaging(1) TCGA-55-A48Y-01 3 41277981 41277981 G C CTNNB1 Missense_Mutation p.E649Q 0.27 deleterious(0.03) benign(0.19) TCGA-55-A48Y-01 3 425559 425559 T C CHL1 Missense_Mutation p.I746T 0.17 deleterious(0) possibly_damaging(0.848) TCGA-55-A48Y-01 3 47950794 47950794 G A MAP4 Intron 0.14 TCGA-55-A48Y-01 3 48697339 48697339 G A CELSR3 Missense_Mutation p.S910L 0.13 deleterious(0) probably_damaging(0.909) TCGA-55-A48Y-01 3 48719553 48719553 G A NCKIPSD Missense_Mutation p.R175C 0.41 deleterious(0.01) benign(0.004) TCGA-55-A48Y-01 3 48719807 48719807 G C NCKIPSD Missense_Mutation p.L154V 0.31 tolerated(0.46) benign(0.006) TCGA-55-A48Y-01 3 49689447 49689447 G C BSN Missense_Mutation p.E820Q 0.16 unknown(0) TCGA-55-A48Y-01 3 49689507 49689507 G A BSN Missense_Mutation p.E840K 0.14 unknown(0) TCGA-55-A48Y-01 3 49690311 49690311 G C BSN Missense_Mutation p.E1108Q 0.12 unknown(0) TCGA-55-A48Y-01 3 52394051 52394051 G C DNAH1 Missense_Mutation p.E1509D 0.12 benign(0.023) TCGA-55-A48Y-01 3 52582073 52582073 A T PBRM1 3'UTR 0.17 TCGA-55-A48Y-01 3 69986996 69986996 C T MITF Silent p.P126P 0.17 TCGA-55-A48Y-01 3 89499345 89499345 G A EPHA3 Missense_Mutation p.E839K 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-55-A48Y-01 3 9798161 9798161 G A OGG1 Missense_Mutation p.D252N 0.19 deleterious(0.01) probably_damaging(0.975) TCGA-55-A48Y-01 3 9828902 9828902 C T TADA3 Silent p.L229L 0.14 TCGA-55-A48Y-01 4 10100690 10100690 G A WDR1 Silent p.F101F 0.17 TCGA-55-A48Y-01 4 102839230 102839230 C T BANK1 Nonsense_Mutation p.Q364* 0.16 TCGA-55-A48Y-01 4 104640572 104640572 G C TACR3 Silent p.L87L 0.33 TCGA-55-A48Y-01 4 110431255 110431255 C G SEC24B Missense_Mutation p.F588L 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-55-A48Y-01 4 13604467 13604467 C G BOD1L1 Missense_Mutation p.D1353H 0.17 possibly_damaging(0.847) TCGA-55-A48Y-01 4 140810865 140810865 C T MAML3 Missense_Mutation p.M575I 0.08 benign(0.118) TCGA-55-A48Y-01 4 144354731 144354731 A T GAB1 Missense_Mutation p.D152V 0.25 tolerated(0.06) benign(0.03) TCGA-55-A48Y-01 4 159772521 159772521 C T FNIP2 Missense_Mutation p.S259F 0.17 deleterious(0.05) benign(0.167) TCGA-55-A48Y-01 4 165962618 165962618 C G TRIM60 Nonsense_Mutation p.S465* 0.30 TCGA-55-A48Y-01 4 169305861 169305861 G C DDX60L Missense_Mutation p.P1340A 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-A48Y-01 4 177116677 177116677 G A SPATA4 Nonsense_Mutation p.Q13* 0.21 TCGA-55-A48Y-01 4 187584663 187584663 C G FAT1 Missense_Mutation p.E1124Q 0.24 benign(0.364) TCGA-55-A48Y-01 4 38799744 38799744 G C TLR1 Missense_Mutation p.L237V 0.17 tolerated(0.07) probably_damaging(0.997) TCGA-55-A48Y-01 4 41652606 41652606 C G LIMCH1 Missense_Mutation p.S621C 0.11 deleterious(0) possibly_damaging(0.873) TCGA-55-A48Y-01 4 657927 657927 C T PDE6B Silent p.I682I 0.16 TCGA-55-A48Y-01 4 68812189 68812189 G C TMPRSS11A Missense_Mutation p.L38V 0.20 deleterious(0.04) probably_damaging(0.981) TCGA-55-A48Y-01 4 71201219 71201219 G A CABS1 Missense_Mutation p.E155K 0.23 tolerated(0.05) benign(0.007) TCGA-55-A48Y-01 4 7742025 7742025 G T SORCS2 3'UTR 0.19 TCGA-55-A48Y-01 4 96761387 96761387 C T PDHA2 Missense_Mutation p.S29L 0.14 tolerated(0.07) benign(0.043) TCGA-55-A48Y-01 5 10973651 10973651 C T CTNND2 Missense_Mutation p.V1198I 0.15 tolerated(0.06) possibly_damaging(0.478) TCGA-55-A48Y-01 5 114603566 114603566 G A CCDC112 3'UTR 0.24 TCGA-55-A48Y-01 5 139941699 139941699 C T APBB3 Silent p.G204G 0.12 TCGA-55-A48Y-01 5 140740131 140740131 C T PCDHGB2 Silent p.G143G 0.16 TCGA-55-A48Y-01 5 16091095 16091095 G A MARCH11 Silent p.L263L 0.14 TCGA-55-A48Y-01 5 32388633 32388633 C T ZFR Missense_Mutation p.E764K 0.10 deleterious(0) unknown(0) TCGA-55-A48Y-01 5 37000480 37000480 A G NIPBL Missense_Mutation p.R1104G 0.22 deleterious_low_confidence(0) benign(0.074) TCGA-55-A48Y-01 5 39306815 39306815 C T C9 Silent p.L440L 0.16 TCGA-55-A48Y-01 5 446389 446389 G A EXOC3 Silent p.P23P 0.12 TCGA-55-A48Y-01 5 66254960 66254960 G C MAST4 Intron 0.42 TCGA-55-A48Y-01 5 79441936 79441936 C T SERINC5 Missense_Mutation p.M405I 0.18 deleterious(0) probably_damaging(0.998) TCGA-55-A48Y-01 6 10586538 10586538 G A GCNT2 Intron 0.15 TCGA-55-A48Y-01 6 161173234 161173234 G A PLG Missense_Mutation p.R738K 0.17 tolerated(0.09) benign(0.131) TCGA-55-A48Y-01 6 16295298 16295298 G C GMPR Missense_Mutation p.D307H 0.12 deleterious(0) probably_damaging(0.99) TCGA-55-A48Y-01 6 167728939 167728939 G A UNC93A Silent p.%3D 0.10 TCGA-55-A48Y-01 6 30594975 30594975 C G ATAT1 5'UTR 0.13 TCGA-55-A48Y-01 6 31860640 31860640 C T EHMT2 Missense_Mutation p.M210I 0.07 tolerated_low_confidence(0.35) benign(0.006) TCGA-55-A48Y-01 6 33289183 33289183 G C DAXX Silent p.L123L 0.16 TCGA-55-A48Y-01 6 33679404 33679404 C G UQCC2 Missense_Mutation p.E20D 0.20 tolerated(0.24) benign(0.003) TCGA-55-A48Y-01 6 49456118 49456118 G C CENPQ Missense_Mutation p.Q177H 0.08 tolerated(0.07) benign(0.132) TCGA-55-A48Y-01 6 73951230 73951230 C T KHDC1 3'UTR 0.21 TCGA-55-A48Y-01 7 102985165 102985165 C G DNAJC2 5'UTR 0.18 TCGA-55-A48Y-01 7 138946407 138946407 C G UBN2 Missense_Mutation p.Q439E 0.20 tolerated(0.5) benign(0.083) TCGA-55-A48Y-01 7 140373412 140373412 C T ADCK2 Silent p.F94F 0.08 TCGA-55-A48Y-01 7 152517413 152517413 C G ACTR3B Missense_Mutation p.I190M 0.17 deleterious(0.01) possibly_damaging(0.533) TCGA-55-A48Y-01 7 22999962 22999962 G A FAM126A Nonsense_Mutation p.Q302* 0.23 TCGA-55-A48Y-01 7 26224264 26224264 C T NFE2L3 Missense_Mutation p.H316Y 0.11 deleterious(0.03) benign(0.139) TCGA-55-A48Y-01 7 27147796 27147796 G C HOXA3 Missense_Mutation p.T357S 0.13 tolerated(0.15) possibly_damaging(0.636) TCGA-55-A48Y-01 7 38516472 38516472 C G AMPH Missense_Mutation p.R165P 0.10 deleterious(0) probably_damaging(1) TCGA-55-A48Y-01 7 41729694 41729694 C A INHBA Missense_Mutation p.A279S 0.29 tolerated(1) benign(0.002) TCGA-55-A48Y-01 7 44281915 44281915 C T CAMK2B Missense_Mutation p.V241I 0.10 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-55-A48Y-01 7 5569008 5569008 C T ACTB Silent p.Q49Q 0.09 TCGA-55-A48Y-01 7 62752732 62752732 C T ZNF733P RNA 0.07 TCGA-55-A48Y-01 7 64863289 64863289 G C ZNF92 Missense_Mutation p.E88Q 0.13 deleterious(0.04) benign(0.084) TCGA-55-A48Y-01 7 69364331 69364331 G A AUTS2 Silent p.K123K 0.11 TCGA-55-A48Y-01 7 72877286 72877286 C G BAZ1B Missense_Mutation p.G1072A 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-A48Y-01 7 73254795 73254795 G A WBSCR27 Nonsense_Mutation p.Q113* 0.27 TCGA-55-A48Y-01 7 73255478 73255478 G A WBSCR27 Silent p.L58L 0.20 TCGA-55-A48Y-01 7 75070291 75070291 C A POM121C Missense_Mutation p.K56N 0.10 deleterious(0) probably_damaging(0.931) TCGA-55-A48Y-01 7 75115192 75115192 G A POM121C 5'UTR 0.30 TCGA-55-A48Y-01 7 8126124 8126124 C A GLCCI1 Missense_Mutation p.Q534K 0.05 tolerated_low_confidence(0.07) benign(0.152) TCGA-55-A48Y-01 7 82595271 82595271 C A PCLO Missense_Mutation p.G1278V 0.16 unknown(0) TCGA-55-A48Y-01 7 91632382 91632382 G A AKAP9 Missense_Mutation p.E1051K 0.18 benign(0.009) TCGA-55-A48Y-01 7 938885 938885 C A ADAP1 Missense_Mutation p.R294L 0.08 tolerated(0.41) benign(0.016) TCGA-55-A48Y-01 7 99792988 99792988 C G STAG3 Silent p.V308V 0.17 TCGA-55-A48Y-01 7 99795436 99795436 G C STAG3 Silent p.L367L 0.12 TCGA-55-A48Y-01 7 99795746 99795746 G A STAG3 Missense_Mutation p.D401N 0.09 deleterious(0) possibly_damaging(0.672) TCGA-55-A48Y-01 7 99811374 99811374 C A STAG3 Missense_Mutation p.S1205Y 0.12 deleterious_low_confidence(0) benign(0.426) TCGA-55-A48Y-01 8 101146559 101146559 G A FBXO43 Missense_Mutation p.R570W 0.10 deleterious(0) probably_damaging(0.999) TCGA-55-A48Y-01 8 102656399 102656399 G C GRHL2 Missense_Mutation p.E520Q 0.25 tolerated(0.1) benign(0.08) TCGA-55-A48Y-01 8 113276007 113276007 A G CSMD3 Silent p.N3241N 0.06 TCGA-55-A48Y-01 8 124268261 124268261 G C ZHX1 5'UTR 0.29 TCGA-55-A48Y-01 8 141415723 141415723 C T TRAPPC9 Missense_Mutation p.E419K 0.11 deleterious(0.01) probably_damaging(0.917) TCGA-55-A48Y-01 8 145065526 145065526 C T GRINA Silent p.P45P 0.47 TCGA-55-A48Y-01 8 145139064 145139064 G A GPAA1 Missense_Mutation p.R215Q 0.14 deleterious(0) possibly_damaging(0.908) TCGA-55-A48Y-01 8 145140309 145140309 G A GPAA1 Missense_Mutation p.E460K 0.11 tolerated(0.15) possibly_damaging(0.681) TCGA-55-A48Y-01 8 145150777 145150777 G A CYC1 Silent p.R57R 0.10 TCGA-55-A48Y-01 8 28304791 28304791 C T FBXO16 Splice_Site p.X247_splice 0.18 TCGA-55-A48Y-01 8 28998072 28998072 G C KIF13B Silent p.L799L 0.20 TCGA-55-A48Y-01 8 38677996 38677996 G C TACC1 Missense_Mutation p.E412Q 0.16 tolerated(0.1) benign(0.001) TCGA-55-A48Y-01 8 41399669 41399669 G A GINS4 3'UTR 0.19 TCGA-55-A48Y-01 8 42033518 42033518 C T PLAT Missense_Mutation p.R561Q 0.10 tolerated(0.28) benign(0.001) TCGA-55-A48Y-01 8 42033559 42033559 G A PLAT Silent p.T547T 0.09 TCGA-55-A48Y-01 8 68111132 68111132 G C ARFGEF1 3'UTR 0.10 TCGA-55-A48Y-01 8 68972947 68972947 G A PREX2 Silent p.E424E 0.12 TCGA-55-A48Y-01 8 87656906 87656906 T A CNGB3 Silent p.S333S 0.36 TCGA-55-A48Y-01 9 100389787 100389787 A T TSTD2 Missense_Mutation p.F20I 0.23 deleterious_low_confidence(0.02) benign(0.255) TCGA-55-A48Y-01 9 100823149 100823149 C T NANS Missense_Mutation p.S73L 0.08 deleterious(0) probably_damaging(0.96) TCGA-55-A48Y-01 9 109687491 109687491 G A ZNF462 Missense_Mutation p.R433K 0.21 benign(0.067) TCGA-55-A48Y-01 9 120475812 120475825 GCTTGTCCAGTCTC - TLR4 Frame_Shift_Del p.L470Sfs*43 0.11 TCGA-55-A48Y-01 9 123476277 123476277 G A MEGF9 Silent p.L120L 0.17 TCGA-55-A48Y-01 9 125551463 125551463 G C OR5C1 Missense_Mutation p.K84N 0.06 tolerated(0.05) probably_damaging(0.909) TCGA-55-A48Y-01 9 125551893 125551893 G A OR5C1 Missense_Mutation p.A228T 0.08 tolerated(0.72) benign(0.097) TCGA-55-A48Y-01 9 125642575 125642575 C T RC3H2 Intron 0.16 TCGA-55-A48Y-01 9 138395470 138395470 G T MRPS2 Missense_Mutation p.A128S 0.10 deleterious(0) probably_damaging(1) TCGA-55-A48Y-01 9 139937485 139937485 C G NPDC1 Missense_Mutation p.K51N 0.16 deleterious(0.02) probably_damaging(0.932) TCGA-55-A48Y-01 9 140400126 140400126 C T PNPLA7 Silent p.R471R 0.07 TCGA-55-A48Y-01 9 18770629 18770629 G C ADAMTSL1 Missense_Mutation p.Q749H 0.22 deleterious(0.04) benign(0.248) TCGA-55-A48Y-01 9 312044 312044 G A DOCK8 Missense_Mutation p.D207N 0.17 deleterious(0) probably_damaging(0.945) TCGA-55-A48Y-01 9 34107422 34107422 C T DCAF12 Missense_Mutation p.G159R 0.17 deleterious(0) probably_damaging(0.968) TCGA-55-A48Y-01 9 34647528 34647528 G T GALT Missense_Mutation p.D98Y 0.16 deleterious(0) probably_damaging(1) TCGA-55-A48Y-01 9 40774673 40774673 T C ZNF658 Missense_Mutation p.K201R 0.19 tolerated(0.29) benign(0.002) TCGA-55-A48Y-01 9 75777731 75777731 C G ANXA1 Nonsense_Mutation p.S170* 0.12 TCGA-55-A48Y-01 9 79323277 79323277 C G PRUNE2 Missense_Mutation p.E1305Q 0.17 deleterious(0) possibly_damaging(0.642) TCGA-55-A48Y-01 9 95237074 95237074 C G ASPN Missense_Mutation p.D36H 0.18 deleterious(0.03) possibly_damaging(0.82) TCGA-55-A48Y-01 9 97522731 97522731 T A C9orf3 Silent p.T222T 0.19 TCGA-55-A48Y-01 X 106844599 106844599 G C FRMPD3 Missense_Mutation p.E1143D 0.40 tolerated_low_confidence(0.09) benign(0.016) TCGA-55-A48Y-01 X 12736252 12736253 - A FRMPD4 Frame_Shift_Ins p.S1105Kfs*31 0.41 TCGA-55-A48Y-01 X 128630742 128630742 C T SMARCA1 Silent p.P537P 0.29 TCGA-55-A48Y-01 X 128630845 128630845 G C SMARCA1 Nonsense_Mutation p.S503* 0.24 TCGA-55-A48Y-01 X 2867415 2867415 T A ARSE Missense_Mutation p.T262S 0.55 tolerated(0.06) benign(0.306) TCGA-55-A48Y-01 X 36156570 36156570 G T CHDC2 Missense_Mutation p.V417L 0.27 tolerated(0.38) benign(0.001) TCGA-55-A48Y-01 X 65476097 65476097 G T HEPH Missense_Mutation p.A995S 0.28 tolerated(0.1) benign(0.009) TCGA-55-A48Y-01 X 69825286 69825286 C G TEX11 Missense_Mutation p.E693Q 0.62 tolerated(0.16) benign(0.079) TCGA-55-A48Z-01 10 50667128 50667128 T C ERCC6 Silent p.L1405L 0.12 TCGA-55-A48Z-01 10 5769069 5769069 G T FAM208B Missense_Mutation p.R157L 0.10 tolerated(0.15) benign(0.087) TCGA-55-A48Z-01 11 107299702 107299702 C T CWF19L2 Nonsense_Mutation p.W419* 0.12 TCGA-55-A48Z-01 11 107682427 107682427 C T SLC35F2 Missense_Mutation p.R127K 0.30 tolerated(1) benign(0.001) TCGA-55-A48Z-01 11 5799682 5799682 C T OR52N5 Silent p.E61E 0.14 TCGA-55-A48Z-01 12 10228168 10228168 C A CLEC1A Missense_Mutation p.D160Y 0.10 deleterious(0.04) probably_damaging(0.92) TCGA-55-A48Z-01 12 123433371 123433371 G A ABCB9 Missense_Mutation p.L285F 0.15 deleterious(0) possibly_damaging(0.776) TCGA-55-A48Z-01 12 990032 990032 C A WNK1 Missense_Mutation p.T993K 0.14 tolerated(0.06) possibly_damaging(0.468) TCGA-55-A48Z-01 13 31712668 31712668 T G HSPH1 Missense_Mutation p.K749T 0.40 tolerated(0.53) benign(0.003) TCGA-55-A48Z-01 13 48941629 48941629 G T RB1 Splice_Site p.X314_splice 0.20 TCGA-55-A48Z-01 13 99554620 99554620 C T DOCK9 Silent p.A434A 0.16 TCGA-55-A48Z-01 14 24728412 24728412 G C TGM1 Missense_Mutation p.S343C 0.25 deleterious(0) possibly_damaging(0.859) TCGA-55-A48Z-01 15 42742156 42742156 G A ZNF106 Missense_Mutation p.P749S 0.15 deleterious(0) probably_damaging(0.998) TCGA-55-A48Z-01 15 83330580 83330580 G T AP3B2 Missense_Mutation p.Q986K 0.48 tolerated(0.21) benign(0.042) TCGA-55-A48Z-01 16 109819 109819 G A RHBDF1 Silent p.C576C 0.20 TCGA-55-A48Z-01 17 7574018 7574018 G A TP53 Missense_Mutation p.R337C 0.37 tolerated(0.09) benign(0.344) TCGA-55-A48Z-01 18 12987107 12987107 C T SEH1L 3'UTR 0.15 TCGA-55-A48Z-01 18 31323897 31323897 C A ASXL3 Missense_Mutation p.P1362Q 0.17 possibly_damaging(0.534) TCGA-55-A48Z-01 18 61648985 61648985 C T SERPINB8 Nonsense_Mutation p.Q113* 0.08 TCGA-55-A48Z-01 18 77227499 77227499 G A NFATC1 Missense_Mutation p.S657N 0.14 tolerated(0.11) benign(0.12) TCGA-55-A48Z-01 19 10251548 10251548 G A DNMT1 Silent p.S1144S 0.24 TCGA-55-A48Z-01 19 11144823 11144823 G A SMARCA4 Missense_Mutation p.E1300K 0.13 probably_damaging(0.995) TCGA-55-A48Z-01 19 17122454 17122454 G A CPAMD8 Silent p.G174G 0.17 TCGA-55-A48Z-01 19 42738508 42738508 T C GSK3A Missense_Mutation p.I301V 0.31 deleterious(0.01) probably_damaging(0.927) TCGA-55-A48Z-01 19 51918834 51918834 C T SIGLEC10 Missense_Mutation p.A354T 0.23 deleterious(0) possibly_damaging(0.735) TCGA-55-A48Z-01 19 56953248 56953248 G T ZNF667 Silent p.T372T 0.22 TCGA-55-A48Z-01 1 13475132 13475132 G A PRAMEF18 Missense_Mutation p.R333C 0.22 deleterious(0.03) benign(0.395) TCGA-55-A48Z-01 1 149399185 149399185 C T HIST2H3PS2 3'Flank 0.10 TCGA-55-A48Z-01 1 16935170 16935170 A G NBPF1 5'UTR 0.08 TCGA-55-A48Z-01 1 248005165 248005165 A C OR11L1 Missense_Mutation p.F12V 0.12 deleterious(0) probably_damaging(0.997) TCGA-55-A48Z-01 1 41461745 41461745 G T CTPS1 Intron 0.09 TCGA-55-A48Z-01 1 52499287 52499287 G A KTI12 Silent p.Y49Y 0.11 TCGA-55-A48Z-01 20 43243188 43243188 T A PKIG 5'UTR 0.12 TCGA-55-A48Z-01 20 43379262 43379262 G T KCNK15 Missense_Mutation p.R259L 0.28 tolerated(0.08) benign(0.13) TCGA-55-A48Z-01 2 130897881 130897881 G T CCDC74B Silent p.G249G 0.09 TCGA-55-A48Z-01 2 212537888 212537888 C A ERBB4 Splice_Site p.X572_splice 0.14 TCGA-55-A48Z-01 2 215013863 215013863 G A SPAG16 Splice_Site p.X532_splice 0.15 TCGA-55-A48Z-01 2 220167070 220167070 G A PTPRN Silent p.Y261Y 0.26 TCGA-55-A48Z-01 2 220419213 220419213 G A OBSL1 Missense_Mutation p.A1620V 0.09 tolerated(0.08) benign(0.117) TCGA-55-A48Z-01 2 46986306 46986306 T C SOCS5 Silent p.L213L 0.25 TCGA-55-A48Z-01 3 11606342 11606342 T A VGLL4 Missense_Mutation p.T142S 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-55-A48Z-01 3 12195178 12195178 G A TIMP4 Missense_Mutation p.S171L 0.07 deleterious(0.01) possibly_damaging(0.625) TCGA-55-A48Z-01 3 185161273 185161273 G T MAP3K13 Nonsense_Mutation p.E234* 0.24 TCGA-55-A48Z-01 3 19554683 19554683 C T KCNH8 Silent p.I767I 0.30 TCGA-55-A48Z-01 3 48732453 48732453 G A IP6K2 Intron 0.13 TCGA-55-A48Z-01 4 85731316 85731316 C A WDFY3 Missense_Mutation p.C690F 0.18 tolerated(0.69) benign(0.142) TCGA-55-A48Z-01 5 141329038 141329038 A T PCDH12 Missense_Mutation p.L1030Q 0.16 tolerated(0.17) probably_damaging(0.994) TCGA-55-A48Z-01 5 14502699 14502699 G A TRIO Missense_Mutation p.D2782N 0.34 unknown(0) TCGA-55-A48Z-01 5 35876542 35876542 A C IL7R Missense_Mutation p.Q445P 0.10 tolerated(0.06) benign(0.045) TCGA-55-A48Z-01 5 36976433 36976433 C A NIPBL Missense_Mutation p.A475D 0.10 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-55-A48Z-01 5 70805668 70805668 G C BDP1 Missense_Mutation p.E917Q 0.05 tolerated(0.16) probably_damaging(0.945) TCGA-55-A48Z-01 6 105577254 105577254 C T BVES Silent p.P117P 0.09 TCGA-55-A48Z-01 6 155718082 155718082 A T NOX3 Missense_Mutation p.V532E 0.21 deleterious(0) probably_damaging(0.992) TCGA-55-A48Z-01 6 44117984 44117991 TGCACAAG - TMEM63B Frame_Shift_Del p.H516Lfs*28 0.34 TCGA-55-A48Z-01 6 73951234 73951234 G A KHDC1 3'UTR 0.22 TCGA-55-A48Z-01 7 121651531 121651531 C T PTPRZ1 Silent p.L811L 0.12 TCGA-55-A48Z-01 7 55241708 55241708 G C EGFR Missense_Mutation p.G719A 0.28 deleterious(0) probably_damaging(0.933) TCGA-55-A48Z-01 7 70228034 70228034 C T AUTS2 Silent p.P307P 0.08 TCGA-55-A48Z-01 7 98565299 98565299 T C TRRAP Missense_Mutation p.F2490S 0.12 probably_damaging(0.917) TCGA-55-A48Z-01 8 100830002 100830002 A G VPS13B Missense_Mutation p.K2803E 0.06 tolerated(0.36) benign(0.064) TCGA-55-A48Z-01 8 131792834 131792834 C A ADCY8 Silent p.L1186L 0.14 TCGA-55-A48Z-01 8 133142196 133142196 C T KCNQ3 Missense_Mutation p.M644I 0.08 tolerated(0.46) benign(0.003) TCGA-55-A48Z-01 8 55539326 55539326 G A RP1 Missense_Mutation p.G962R 0.12 tolerated(0.54) benign(0.015) TCGA-55-A48Z-01 9 100971013 100971013 C G TBC1D2 Missense_Mutation p.R696P 0.12 deleterious(0) probably_damaging(0.952) TCGA-55-A48Z-01 X 107834438 107834438 C A COL4A5 Missense_Mutation p.P439H 0.07 unknown(0) TCGA-55-A48Z-01 X 152770087 152770087 G A BGN 5'UTR 0.06 TCGA-55-A48Z-01 X 153588905 153588905 G A FLNA Silent p.A1086A 0.14 TCGA-55-A48Z-01 X 153698358 153698358 C T PLXNA3 Missense_Mutation p.R1612C 0.10 deleterious(0) probably_damaging(0.999) TCGA-55-A48Z-01 X 50119766 50119766 A C DGKK RNA 0.11 TCGA-55-A490-01 10 100995409 100995409 T A HPSE2 Nonsense_Mutation p.R51* 0.17 TCGA-55-A490-01 10 101590526 101590526 G - ABCC2 Frame_Shift_Del p.N935Mfs*2 0.14 TCGA-55-A490-01 10 101603570 101603570 G T ABCC2 Silent p.L1252L 0.14 TCGA-55-A490-01 10 101716642 101716642 C A DNMBP Missense_Mutation p.G197C 0.12 deleterious(0) probably_damaging(1) TCGA-55-A490-01 10 102505966 102505966 G T PAX2 5'UTR 0.15 TCGA-55-A490-01 10 102566275 102566275 G T PAX2 Missense_Mutation p.Q258H 0.11 deleterious(0.05) probably_damaging(0.921) TCGA-55-A490-01 10 105201669 105201669 G T PDCD11 Silent p.P1548P 0.50 TCGA-55-A490-01 10 105201670 105201670 G T PDCD11 Missense_Mutation p.A1549S 0.51 tolerated(0.1) benign(0.141) TCGA-55-A490-01 10 108469081 108469081 C A SORCS1 Missense_Mutation p.C348F 0.29 deleterious(0) probably_damaging(1) TCGA-55-A490-01 10 113913356 113913356 G A GPAM Silent p.C813C 0.11 TCGA-55-A490-01 10 114053563 114053563 T A TECTB Missense_Mutation p.L184Q 0.33 deleterious(0) probably_damaging(0.914) TCGA-55-A490-01 10 119798612 119798612 C A RAB11FIP2 Missense_Mutation p.G379V 0.25 deleterious(0.03) benign(0.385) TCGA-55-A490-01 10 120830458 120830458 G A EIF3A Silent p.S227S 0.21 TCGA-55-A490-01 10 122622260 122622260 G T WDR11 Missense_Mutation p.E180D 0.16 tolerated(0.9) benign(0.019) TCGA-55-A490-01 10 124345684 124345684 G T DMBT1 Missense_Mutation p.W523L 0.30 deleterious(0) unknown(0) TCGA-55-A490-01 10 124392822 124392822 C A DMBT1 Missense_Mutation p.N2042K 0.60 tolerated(0.18) benign(0.22) TCGA-55-A490-01 10 124909258 124909258 G T HMX2 Silent p.A147A 0.72 TCGA-55-A490-01 10 131943583 131943583 G T GLRX3 Missense_Mutation p.K67N 0.62 tolerated(0.06) benign(0.411) TCGA-55-A490-01 10 13386940 13386940 C A SEPHS1 Missense_Mutation p.R4L 0.24 deleterious(0.01) benign(0.16) TCGA-55-A490-01 10 134751117 134751117 G - TTC40 Frame_Shift_Del p.T200Rfs*26 0.12 TCGA-55-A490-01 10 134896138 134896138 G A GPR123-AS1 3'Flank 0.64 TCGA-55-A490-01 10 134896174 134896174 G A GPR123-AS1 3'Flank 0.14 TCGA-55-A490-01 10 134906671 134906671 C A GPR123 Intron 0.67 TCGA-55-A490-01 10 135053794 135053794 C A VENTX Missense_Mutation p.T254K 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.67) TCGA-55-A490-01 10 135372442 135372442 G A SYCE1 Silent p.A70A 0.12 TCGA-55-A490-01 10 15639299 15639299 C A ITGA8 Splice_Site p.X707_splice 0.52 TCGA-55-A490-01 10 16526626 16526626 G T PTER Missense_Mutation p.K81N 0.19 tolerated(0.32) benign(0.219) TCGA-55-A490-01 10 18834780 18834780 C A NSUN6 3'UTR 0.27 TCGA-55-A490-01 10 21108432 21108432 T C NEBL Missense_Mutation p.E659G 0.40 tolerated(0.05) possibly_damaging(0.861) TCGA-55-A490-01 10 21186113 21186113 C A NEBL Missense_Mutation p.D8Y 0.56 deleterious_low_confidence(0) benign(0.429) TCGA-55-A490-01 10 23248021 23248021 G A ARMC3 Silent p.R105R 0.24 TCGA-55-A490-01 10 24813550 24813550 G T KIAA1217 Missense_Mutation p.V919F 0.18 tolerated(0.6) benign(0.409) TCGA-55-A490-01 10 25464291 25464291 C A GPR158 5'UTR 0.40 TCGA-55-A490-01 10 25887691 25887691 G A GPR158 Missense_Mutation p.E1046K 0.36 tolerated(0.59) benign(0.007) TCGA-55-A490-01 10 26506829 26506829 G T GAD2 Silent p.R65R 0.31 TCGA-55-A490-01 10 26512829 26512829 C A GAD2 Nonsense_Mutation p.Y178* 0.15 TCGA-55-A490-01 10 26789919 26789919 G A APBB1IP Missense_Mutation p.G111D 0.24 tolerated(0.08) benign(0.421) TCGA-55-A490-01 10 30317641 30317641 C T KIAA1462 Missense_Mutation p.S479N 0.19 tolerated(0.33) benign(0.023) TCGA-55-A490-01 10 38299603 38299603 G C ZNF33A 5'UTR 0.30 TCGA-55-A490-01 10 38344520 38344520 A C ZNF33A Missense_Mutation p.I490L 0.10 tolerated(0.26) benign(0.055) TCGA-55-A490-01 10 45798954 45798954 A G OR13A1 Missense_Mutation p.L306P 0.36 deleterious(0) probably_damaging(0.933) TCGA-55-A490-01 10 48389949 48389949 T A RBP3 Missense_Mutation p.E310V 0.36 deleterious(0) probably_damaging(0.956) TCGA-55-A490-01 10 49791160 49791160 C A ARHGAP22 Silent p.R24R 0.35 TCGA-55-A490-01 10 49791161 49791161 C A ARHGAP22 Missense_Mutation p.R24L 0.35 deleterious(0.02) possibly_damaging(0.748) TCGA-55-A490-01 10 5037597 5037597 G T AKR1C2 Missense_Mutation p.L254M 0.13 tolerated(0.15) probably_damaging(0.992) TCGA-55-A490-01 10 50679103 50679103 G C ERCC6 Missense_Mutation p.F996L 0.28 deleterious(0) possibly_damaging(0.841) TCGA-55-A490-01 10 50863174 50863174 C A CHAT Missense_Mutation p.S556R 0.35 deleterious(0.01) probably_damaging(1) TCGA-55-A490-01 10 5144756 5144756 C A AKR1C3 Missense_Mutation p.L254M 0.14 tolerated(0.15) probably_damaging(0.991) TCGA-55-A490-01 10 53459343 53459343 C A CSTF2T 5'UTR 0.24 TCGA-55-A490-01 10 54076534 54076536 TTC - DKK1 In_Frame_Del p.S258del 0.19 TCGA-55-A490-01 10 58120969 58120969 G T ZWINT Missense_Mutation p.A10D 0.18 deleterious(0) unknown(0) TCGA-55-A490-01 10 62652603 62652603 C A RHOBTB1 Silent p.L149L 0.23 TCGA-55-A490-01 10 69948775 69948775 G T MYPN Silent p.T939T 0.50 TCGA-55-A490-01 10 70719742 70719742 C G DDX21 Missense_Mutation p.P90A 0.31 tolerated_low_confidence(0.16) benign(0.03) TCGA-55-A490-01 10 71075652 71075652 G T HK1 Intron 0.50 TCGA-55-A490-01 10 72020428 72020428 G A NPFFR1 Silent p.S130S 0.15 TCGA-55-A490-01 10 72289780 72289780 G T PALD1 Missense_Mutation p.G142W 0.35 deleterious(0.01) probably_damaging(1) TCGA-55-A490-01 10 72536983 72536983 G A TBATA Nonsense_Mutation p.Q206* 0.40 TCGA-55-A490-01 10 73406356 73406356 C T CDH23 Silent p.T69T 0.18 TCGA-55-A490-01 10 73464783 73464783 C A CDH23 Missense_Mutation p.T542N 0.41 tolerated(0.15) possibly_damaging(0.481) TCGA-55-A490-01 10 74631226 74631226 T G MCU Missense_Mutation p.L250W 0.40 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 10 74631228 74631228 G C MCU Missense_Mutation p.A251P 0.40 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 10 75391680 75391680 G A MYOZ1 3'UTR 0.30 TCGA-55-A490-01 10 75533626 75533626 C G FUT11 Intron 0.42 TCGA-55-A490-01 10 76735733 76735733 G T KAT6B Silent p.G546G 0.38 TCGA-55-A490-01 10 7755207 7755207 T G ITIH2 Nonsense_Mutation p.Y142* 0.26 TCGA-55-A490-01 10 84118543 84118543 G T NRG3 Missense_Mutation p.R291L 0.44 tolerated(0.13) benign(0.197) TCGA-55-A490-01 10 84118544 84118544 A T NRG3 Silent p.R291R 0.43 TCGA-55-A490-01 10 85981726 85981726 T C LRIT2 Missense_Mutation p.I535V 0.46 tolerated(0.28) benign(0.001) TCGA-55-A490-01 10 85984683 85984683 C - LRIT2 Frame_Shift_Del p.E100Nfs*6 0.24 TCGA-55-A490-01 10 90438339 90438339 G C LIPF Missense_Mutation p.E376D 0.34 tolerated(0.23) benign(0.022) TCGA-55-A490-01 10 92617012 92617012 G T HTR7 Missense_Mutation p.S139R 0.42 tolerated(0.06) probably_damaging(0.954) TCGA-55-A490-01 10 95372681 95372681 T - PDE6C Frame_Shift_Del p.W67Gfs*76 0.29 TCGA-55-A490-01 10 96612644 96612644 C G CYP2C19 Missense_Mutation p.F482L 0.20 tolerated(0.76) benign(0.001) TCGA-55-A490-01 10 96805589 96805589 C A CYP2C8 Silent p.L313L 0.24 TCGA-55-A490-01 10 98165042 98165042 C T TLL2 Nonsense_Mutation p.W405* 0.18 TCGA-55-A490-01 10 99198450 99198450 C T EXOSC1 Missense_Mutation p.V108I 0.26 tolerated(0.3) benign(0.011) TCGA-55-A490-01 11 104901096 104901096 C A CASP1 Silent p.L196L 0.39 TCGA-55-A490-01 11 113076779 113076779 C A NCAM1 Missense_Mutation p.L228M 0.44 tolerated(0.1) benign(0.431) TCGA-55-A490-01 11 113195392 113195392 G T TTC12 Missense_Mutation p.V104F 0.50 tolerated(0.05) possibly_damaging(0.601) TCGA-55-A490-01 11 118405023 118405023 G T TMEM25 Missense_Mutation p.R327L 0.22 tolerated(0.18) benign(0.049) TCGA-55-A490-01 11 118965794 118965794 G T H2AFX Missense_Mutation p.A104D 0.42 deleterious_low_confidence(0) benign(0.29) TCGA-55-A490-01 11 120732786 120732786 C A GRIK4 Missense_Mutation p.S288Y 0.39 deleterious(0) probably_damaging(0.939) TCGA-55-A490-01 11 123777147 123777147 A T OR8D4 Silent p.V3V 0.15 TCGA-55-A490-01 11 123777848 123777848 C A OR8D4 Missense_Mutation p.A237E 0.43 deleterious(0) probably_damaging(0.965) TCGA-55-A490-01 11 123893938 123893938 T A OR10G9 Silent p.T73T 0.15 TCGA-55-A490-01 11 124763799 124763799 C G ROBO4 Silent p.V487V 0.26 TCGA-55-A490-01 11 1262564 1262564 G T MUC5B Missense_Mutation p.G1485V 0.27 unknown(0) TCGA-55-A490-01 11 1269679 1269679 C A MUC5B Missense_Mutation p.P3857T 0.22 unknown(0) TCGA-55-A490-01 11 1270338 1270338 C G MUC5B Silent p.T4076T 0.24 TCGA-55-A490-01 11 133790971 133790971 C A IGSF9B Silent p.T883T 0.15 TCGA-55-A490-01 11 14282264 14282264 G T RP11-21L19.1 3'Flank 0.23 TCGA-55-A490-01 11 14512186 14512186 T A COPB1 Silent p.I177I 0.38 TCGA-55-A490-01 11 15267457 15267457 G T INSC Splice_Site p.X538_splice 0.32 TCGA-55-A490-01 11 1858197 1858197 G T SYT8 Silent p.V281V 0.31 TCGA-55-A490-01 11 1860920 1860920 C A TNNI2 5'UTR 0.20 TCGA-55-A490-01 11 19256332 19256332 T G E2F8 Missense_Mutation p.D242A 0.34 deleterious(0) benign(0.371) TCGA-55-A490-01 11 20625863 20625863 G T SLC6A5 Missense_Mutation p.R191L 0.22 deleterious(0) probably_damaging(1) TCGA-55-A490-01 11 22249049 22249049 G T ANO5 Missense_Mutation p.A189S 0.14 tolerated(0.13) possibly_damaging(0.697) TCGA-55-A490-01 11 22294475 22294475 T C ANO5 Silent p.H725H 0.30 TCGA-55-A490-01 11 237093 237093 G T PSMD13 Missense_Mutation p.G15V 0.20 tolerated(0.15) benign(0.098) TCGA-55-A490-01 11 2424074 2424074 G T TSSC4 Missense_Mutation p.G71C 0.38 deleterious(0.01) probably_damaging(0.958) TCGA-55-A490-01 11 27114808 27114808 C A BBOX1 Missense_Mutation p.T143N 0.21 tolerated(0.26) benign(0.011) TCGA-55-A490-01 11 33065472 33065472 G A TCP11L1 Silent p.Q51Q 0.08 TCGA-55-A490-01 11 33124691 33124691 G A CSTF3 Missense_Mutation p.R209W 0.27 deleterious(0) benign(0.247) TCGA-55-A490-01 11 33682506 33682506 G A KIAA1549L Silent p.Q1738Q 0.32 TCGA-55-A490-01 11 34144128 34144128 G T NAT10 Silent p.A301A 0.17 TCGA-55-A490-01 11 34144129 34144129 G T NAT10 Missense_Mutation p.V302L 0.15 tolerated(0.16) benign(0.158) TCGA-55-A490-01 11 36422584 36422584 G T PRR5L 5'UTR 0.48 TCGA-55-A490-01 11 36484051 36484051 C A PRR5L Missense_Mutation p.T291K 0.26 deleterious(0) probably_damaging(1) TCGA-55-A490-01 11 43511873 43511873 C T TTC17 Missense_Mutation p.R1039C 0.26 deleterious(0) probably_damaging(0.998) TCGA-55-A490-01 11 4510379 4510379 G C OR52K1 Missense_Mutation p.M83I 0.28 tolerated(0.22) possibly_damaging(0.77) TCGA-55-A490-01 11 46686425 46686425 G T ATG13 Missense_Mutation p.Q305H 0.18 tolerated_low_confidence(0.06) benign(0.259) TCGA-55-A490-01 11 4673740 4673740 C G OR51E1 5'UTR 0.35 TCGA-55-A490-01 11 46765411 46765411 G A CKAP5 3'UTR 0.36 TCGA-55-A490-01 11 48239261 48239261 G T OR4B1 Missense_Mutation p.W300C 0.33 tolerated(0.07) benign(0.049) TCGA-55-A490-01 11 4825704 4825704 G T OR52R1 5'Flank 0.27 TCGA-55-A490-01 11 4825782 4825782 G T OR52R1 5'Flank 0.20 TCGA-55-A490-01 11 4903378 4903378 G T OR51T1 Silent p.V110V 0.26 TCGA-55-A490-01 11 4968295 4968295 G T OR51A4 Silent p.T12T 0.21 TCGA-55-A490-01 11 4976401 4976401 A T OR51A2 Nonsense_Mutation p.C181* 0.60 TCGA-55-A490-01 11 5012714 5012714 G T MMP26 Missense_Mutation p.A195S 0.25 tolerated(0.57) benign(0.001) TCGA-55-A490-01 11 51412229 51412229 G T OR4A5 Missense_Mutation p.P56Q 0.47 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-55-A490-01 11 51515320 51515320 G A OR4C46 Silent p.L13L 0.19 TCGA-55-A490-01 11 5221002 5221002 G T OR51V1 Missense_Mutation p.T310N 0.29 tolerated(0.34) benign(0) TCGA-55-A490-01 11 5221782 5221782 C A OR51V1 Missense_Mutation p.G50V 0.27 deleterious(0) probably_damaging(1) TCGA-55-A490-01 11 5372875 5372875 C A OR51B6 Silent p.L46L 0.32 TCGA-55-A490-01 11 5444177 5444177 T A OR51Q1 Silent p.A249A 0.31 TCGA-55-A490-01 11 55038027 55038027 C A TRIM48 3'UTR 0.35 TCGA-55-A490-01 11 5510454 5510454 G T OR52D1 Missense_Mutation p.G173V 0.20 deleterious(0.03) possibly_damaging(0.614) TCGA-55-A490-01 11 55541364 55541364 T G OR5D13 Missense_Mutation p.Y151D 0.11 deleterious(0) probably_damaging(0.996) TCGA-55-A490-01 11 55587399 55587399 C A OR5D18 Nonsense_Mutation p.C98* 0.16 TCGA-55-A490-01 11 55587532 55587532 G T OR5D18 Missense_Mutation p.V143L 0.14 tolerated(0.07) benign(0.006) TCGA-55-A490-01 11 55681256 55681256 A T OR5W2 Missense_Mutation p.L268Q 0.52 deleterious(0) possibly_damaging(0.819) TCGA-55-A490-01 11 55904798 55904798 T G OR8J3 Missense_Mutation p.M133L 0.15 tolerated(0.35) benign(0.002) TCGA-55-A490-01 11 55905110 55905110 G T OR8J3 Missense_Mutation p.L29M 0.21 tolerated(0.22) benign(0.04) TCGA-55-A490-01 11 56258724 56258724 G A OR5M8 Silent p.N41N 0.40 TCGA-55-A490-01 11 56380331 56380331 C A OR5M1 Silent p.L216L 0.13 TCGA-55-A490-01 11 56431268 56431268 T G OR5AR1 Missense_Mutation p.L36R 0.19 deleterious(0) possibly_damaging(0.594) TCGA-55-A490-01 11 56431454 56431454 C G OR5AR1 Missense_Mutation p.A98G 0.17 deleterious(0.01) possibly_damaging(0.499) TCGA-55-A490-01 11 56468472 56468472 C T OR9G1 Silent p.A203A 0.15 TCGA-55-A490-01 11 57466733 57466733 G - ZDHHC5 Frame_Shift_Del p.G609Afs*6 0.19 TCGA-55-A490-01 11 58034629 58034629 G T OR10W1 Silent p.S234S 0.14 TCGA-55-A490-01 11 59271360 59271360 C A OR4D11 Missense_Mutation p.F104L 0.32 tolerated(0.36) probably_damaging(0.998) TCGA-55-A490-01 11 59603354 59603354 T G GIF Missense_Mutation p.N334H 0.23 tolerated(0.07) benign(0.198) TCGA-55-A490-01 11 5969017 5969017 G T OR56A3 Missense_Mutation p.K147N 0.22 deleterious(0.02) benign(0.031) TCGA-55-A490-01 11 60102422 60102422 C A MS4A6E Silent p.V18V 0.12 TCGA-55-A490-01 11 60476255 60476255 G T MS4A8 Splice_Site p.X178_splice 0.24 TCGA-55-A490-01 11 60610098 60610098 G T CCDC86 Missense_Mutation p.Q167H 0.34 deleterious(0.03) possibly_damaging(0.695) TCGA-55-A490-01 11 60901538 60901538 C A VPS37C Nonsense_Mutation p.E79* 0.34 TCGA-55-A490-01 11 61048400 61048400 C A VWCE Missense_Mutation p.M365I 0.45 tolerated(0.17) benign(0.002) TCGA-55-A490-01 11 61053816 61053816 G T VWCE Missense_Mutation p.Q171K 0.18 tolerated(0.09) possibly_damaging(0.645) TCGA-55-A490-01 11 6240209 6240209 C A FAM160A2 Silent p.L421L 0.33 TCGA-55-A490-01 11 62650419 62650419 G T SLC3A2 Missense_Mutation p.G315V 0.40 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 11 63137567 63137567 G T SLC22A9 Silent p.L13L 0.29 TCGA-55-A490-01 11 6453208 6453208 C A HPX Missense_Mutation p.W292L 0.25 tolerated(0.33) benign(0.024) TCGA-55-A490-01 11 64756840 64756840 G T BATF2 Missense_Mutation p.Q196K 0.34 deleterious(0.01) benign(0.04) TCGA-55-A490-01 11 65423362 65423362 T C RELA Missense_Mutation p.T308A 0.18 tolerated(0.51) benign(0.002) TCGA-55-A490-01 11 66062166 66062166 G T TMEM151A Missense_Mutation p.W150L 0.50 deleterious(0) probably_damaging(0.997) TCGA-55-A490-01 11 66307261 66307261 G A ZDHHC24 Silent p.F198F 0.27 TCGA-55-A490-01 11 66335531 66335531 G C CTSF Missense_Mutation p.S79C 0.34 deleterious(0.01) probably_damaging(0.935) TCGA-55-A490-01 11 6653770 6653770 C A DCHS1 Silent p.V991V 0.36 TCGA-55-A490-01 11 67942604 67942604 C G SUV420H1 Missense_Mutation p.E142Q 0.25 deleterious(0.03) benign(0.011) TCGA-55-A490-01 11 6806467 6806467 T C OR2AG1 Missense_Mutation p.S67P 0.23 deleterious(0) probably_damaging(0.98) TCGA-55-A490-01 11 68777337 68777337 G - MRGPRF Frame_Shift_Del p.G12Afs*10 0.16 TCGA-55-A490-01 11 70052378 70052378 G T FADD Silent p.R142R 0.33 TCGA-55-A490-01 11 7064318 7064318 G A NLRP14 Missense_Mutation p.S354N 0.34 tolerated(0.75) benign(0.003) TCGA-55-A490-01 11 73765654 73765654 C A C2CD3 Missense_Mutation p.G1718V 0.20 deleterious(0.01) benign(0.096) TCGA-55-A490-01 11 74648054 74648054 C A XRRA1 Missense_Mutation p.V52F 0.52 tolerated(0.19) benign(0.01) TCGA-55-A490-01 11 74899178 74899178 C T SLCO2B1 Intron 0.29 TCGA-55-A490-01 11 78369326 78369326 T G TENM4 Missense_Mutation p.Q2696P 0.24 deleterious(0) probably_damaging(0.96) TCGA-55-A490-01 11 78381366 78381366 G T TENM4 Silent p.R2008R 0.09 TCGA-55-A490-01 11 7982110 7982110 G T NLRP10 Missense_Mutation p.A350E 0.17 tolerated(0.19) benign(0.081) TCGA-55-A490-01 11 7982669 7982669 G T NLRP10 Missense_Mutation p.L164M 0.40 deleterious(0.04) benign(0.231) TCGA-55-A490-01 11 810350 810350 T G RPLP2 Missense_Mutation p.L39R 0.26 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 11 85988962 85988962 G T EED Missense_Mutation p.M376I 0.43 tolerated(1) benign(0.001) TCGA-55-A490-01 11 89924760 89924760 T A NAALAD2 Missense_Mutation p.Y690N 0.36 deleterious(0) probably_damaging(1) TCGA-55-A490-01 11 92534236 92534236 C A FAT3 Missense_Mutation p.P2686Q 0.47 probably_damaging(0.998) TCGA-55-A490-01 11 92577542 92577542 G C FAT3 Missense_Mutation p.R3670P 0.28 possibly_damaging(0.885) TCGA-55-A490-01 11 92624303 92624303 C A FAT3 3'UTR 0.44 TCGA-55-A490-01 11 93466723 93466723 G T KIAA1731 3'Flank 0.37 TCGA-55-A490-01 11 93530833 93530833 G T MED17 Missense_Mutation p.G426W 0.60 deleterious(0.02) possibly_damaging(0.714) TCGA-55-A490-01 11 95826241 95826241 C A MAML2 Silent p.V318V 0.17 TCGA-55-A490-01 12 107208802 107208802 G T RIC8B Missense_Mutation p.R154L 0.15 tolerated(0.3) benign(0.232) TCGA-55-A490-01 12 108006582 108006582 G T BTBD11 Missense_Mutation p.C612F 0.31 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 12 108600148 108600148 C A WSCD2 Silent p.T155T 0.14 TCGA-55-A490-01 12 108985460 108985460 C T TMEM119 Missense_Mutation p.E234K 0.23 tolerated(0.06) possibly_damaging(0.466) TCGA-55-A490-01 12 109182759 109182759 C A SSH1 Missense_Mutation p.G719C 0.35 deleterious_low_confidence(0) possibly_damaging(0.815) TCGA-55-A490-01 12 109294187 109294187 A G DAO Missense_Mutation p.H307R 0.31 deleterious(0) probably_damaging(1) TCGA-55-A490-01 12 109306216 109306216 C A SVOP 3'UTR 0.37 TCGA-55-A490-01 12 110231795 110231795 G T TRPV4 Nonsense_Mutation p.Y508* 0.18 TCGA-55-A490-01 12 11083411 11083411 C T PRH2 Missense_Mutation p.P84L 0.12 tolerated_low_confidence(0.17) unknown(0) TCGA-55-A490-01 12 112623130 112623130 C A HECTD4 Missense_Mutation p.A3068S 0.42 possibly_damaging(0.725) TCGA-55-A490-01 12 113357269 113357269 G A OAS1 Intron 0.41 TCGA-55-A490-01 12 113386754 113386754 A T OAS3 Missense_Mutation p.N373I 0.14 tolerated(0.07) benign(0.004) TCGA-55-A490-01 12 11461660 11461660 C A PRB4 Missense_Mutation p.G86V 0.06 deleterious_low_confidence(0) unknown(0) TCGA-55-A490-01 12 11546631 11546631 G T PRB2 Missense_Mutation p.N127K 0.43 deleterious(0.02) unknown(0) TCGA-55-A490-01 12 116422114 116422114 C A MED13L Nonsense_Mutation p.G1468* 0.25 TCGA-55-A490-01 12 117217138 117217141 GGCT TGGCC RNFT2 Frame_Shift_Ins p.A290Gfs*35 0.15 TCGA-55-A490-01 12 117701735 117701735 G T NOS1 Silent p.T727T 0.33 TCGA-55-A490-01 12 117749384 117749384 T A NOS1 Nonsense_Mutation p.K247* 0.20 TCGA-55-A490-01 12 118520236 118520236 T A VSIG10 Splice_Site p.X121_splice 0.38 TCGA-55-A490-01 12 118610378 118610378 C T TAOK3 Missense_Mutation p.E595K 0.35 deleterious(0.02) benign(0.002) TCGA-55-A490-01 12 119978555 119978555 G C CCDC60 3'UTR 0.20 TCGA-55-A490-01 12 120615556 120615556 C G GCN1L1 Splice_Site p.X221_splice 0.37 TCGA-55-A490-01 12 123087622 123087622 A T KNTC1 Nonsense_Mutation p.K1645* 0.23 TCGA-55-A490-01 12 123201018 123201018 C T HCAR3 Silent p.R89R 0.28 TCGA-55-A490-01 12 123480059 123480059 C A PITPNM2 Missense_Mutation p.S644I 0.16 tolerated(0.05) probably_damaging(0.996) TCGA-55-A490-01 12 124252183 124252183 A T DNAH10 Missense_Mutation p.E21V 0.50 unknown(0) TCGA-55-A490-01 12 124326001 124326001 G T DNAH10 Missense_Mutation p.D1639Y 0.18 benign(0.291) TCGA-55-A490-01 12 124359902 124359902 C A DNAH10 Missense_Mutation p.A2570E 0.15 probably_damaging(0.996) TCGA-55-A490-01 12 124821372 124821372 C A NCOR2 Silent p.S2014S 0.39 TCGA-55-A490-01 12 125834517 125834517 C A TMEM132B Missense_Mutation p.P191H 0.39 deleterious(0) probably_damaging(1) TCGA-55-A490-01 12 129822322 129822322 C A TMEM132D Nonsense_Mutation p.E386* 0.19 TCGA-55-A490-01 12 130897280 130897280 C T RIMBP2 Missense_Mutation p.R902Q 0.15 deleterious(0.05) probably_damaging(0.996) TCGA-55-A490-01 12 131602946 131602946 C A GPR133 Silent p.I686I 0.12 TCGA-55-A490-01 12 132271013 132271013 G C SFSWAP Missense_Mutation p.R857P 0.36 deleterious_low_confidence(0) possibly_damaging(0.655) TCGA-55-A490-01 12 132325308 132325308 G C MMP17 Missense_Mutation p.G205R 0.20 deleterious(0) probably_damaging(0.996) TCGA-55-A490-01 12 132562164 132562164 G A EP400 Silent p.Q3106Q 0.40 TCGA-55-A490-01 12 13768118 13768118 G C GRIN2B Silent p.P528P 0.19 TCGA-55-A490-01 12 15813567 15813568 - C EPS8 Frame_Shift_Ins p.K307* 0.09 TCGA-55-A490-01 12 1749000 1749000 G T WNT5B Missense_Mutation p.G160V 0.13 deleterious(0) probably_damaging(1) TCGA-55-A490-01 12 21331658 21331658 T G SLCO1B1 Splice_Site p.X210_splice 0.33 TCGA-55-A490-01 12 21620471 21620471 T A PYROXD1 Silent p.A391A 0.29 TCGA-55-A490-01 12 21788493 21788493 C A LDHB Missense_Mutation p.D330Y 0.14 deleterious(0) probably_damaging(0.983) TCGA-55-A490-01 12 25260847 25260847 T G LRMP Missense_Mutation p.F451L 0.11 tolerated(1) benign(0.057) TCGA-55-A490-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.75 deleterious(0.04) probably_damaging(0.993) TCGA-55-A490-01 12 2659170 2659170 C A CACNA1C Silent p.I484I 0.35 TCGA-55-A490-01 12 27117719 27117719 G T FGFR1OP2 3'UTR 0.58 TCGA-55-A490-01 12 280294 280294 G C IQSEC3 Silent p.A1027A 0.22 TCGA-55-A490-01 12 29649562 29649562 G T OVCH1 Missense_Mutation p.P37H 0.12 deleterious(0.03) possibly_damaging(0.54) TCGA-55-A490-01 12 32135000 32135000 A T KIAA1551 Nonsense_Mutation p.K371* 0.22 TCGA-55-A490-01 12 344284 344284 G C SLC6A13 Missense_Mutation p.P268R 0.12 deleterious(0) probably_damaging(0.988) TCGA-55-A490-01 12 3686110 3686110 C T PRMT8 Silent p.I262I 0.51 TCGA-55-A490-01 12 39979951 39979951 T C ABCD2 Intron 0.28 TCGA-55-A490-01 12 42781261 42781266 AAGAGA GAGC PPHLN1 Frame_Shift_Del p.K191Rfs*32 0.24 TCGA-55-A490-01 12 4387953 4387953 T C CCND2 Silent p.L147L 0.17 TCGA-55-A490-01 12 44238526 44238526 C A TMEM117 Missense_Mutation p.F24L 0.37 tolerated(0.25) probably_damaging(0.953) TCGA-55-A490-01 12 46211529 46211529 G T ARID2 Silent p.L165L 0.11 TCGA-55-A490-01 12 4708283 4708283 G C DYRK4 Missense_Mutation p.C217S 0.11 tolerated(0.27) probably_damaging(0.985) TCGA-55-A490-01 12 4721711 4721711 G T DYRK4 Missense_Mutation p.W383L 0.50 deleterious(0) probably_damaging(0.99) TCGA-55-A490-01 12 4737038 4737038 C G AKAP3 Missense_Mutation p.V344L 0.19 deleterious(0.04) probably_damaging(0.999) TCGA-55-A490-01 12 4835819 4835819 G A GALNT8 Silent p.K111K 0.12 TCGA-55-A490-01 12 4854630 4854630 G T GALNT8 Missense_Mutation p.R299L 0.18 deleterious(0) possibly_damaging(0.743) TCGA-55-A490-01 12 49956919 49956919 T A MCRS1 Missense_Mutation p.S237C 0.50 deleterious(0) probably_damaging(0.973) TCGA-55-A490-01 12 5021007 5021007 C A KCNA1 Missense_Mutation p.L155M 0.17 tolerated(0.07) probably_damaging(0.998) TCGA-55-A490-01 12 5154185 5154185 C T KCNA5 Missense_Mutation p.P291L 0.50 tolerated(0.3) benign(0.003) TCGA-55-A490-01 12 52156455 52156455 C A SCN8A Silent p.R847R 0.27 TCGA-55-A490-01 12 52710278 52710278 C T KRT83 Missense_Mutation p.A339T 0.14 tolerated(0.07) benign(0.25) TCGA-55-A490-01 12 52908754 52908754 G T KRT5 Missense_Mutation p.S582Y 0.34 deleterious(0) unknown(0) TCGA-55-A490-01 12 53342895 53342895 C T KRT18 5'UTR 0.12 TCGA-55-A490-01 12 53877416 53877416 C A MAP3K12 Nonsense_Mutation p.E484* 0.49 TCGA-55-A490-01 12 54110077 54110077 C T CALCOCO1 Missense_Mutation p.M324I 0.47 tolerated(0.08) benign(0.032) TCGA-55-A490-01 12 55794881 55794881 C A OR6C65 Missense_Mutation p.T190K 0.09 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-55-A490-01 12 56742984 56742984 G A STAT2 Missense_Mutation p.S468L 0.39 deleterious(0) probably_damaging(0.998) TCGA-55-A490-01 12 57317625 57317625 T A SDR9C7 Missense_Mutation p.S312C 0.43 deleterious(0.01) probably_damaging(0.997) TCGA-55-A490-01 12 57432275 57432275 G A MYO1A Missense_Mutation p.P561S 0.48 deleterious(0.04) benign(0.363) TCGA-55-A490-01 12 57626980 57626980 A T SHMT2 Missense_Mutation p.Y292F 0.10 tolerated(0.82) benign(0.21) TCGA-55-A490-01 12 57924383 57924383 G C DCTN2 3'UTR 0.40 TCGA-55-A490-01 12 58131152 58131152 A T AGAP2 Missense_Mutation p.L293Q 0.14 tolerated_low_confidence(0.1) benign(0.001) TCGA-55-A490-01 12 62902145 62902145 G T MON2 Missense_Mutation p.R290I 0.38 deleterious(0.04) possibly_damaging(0.897) TCGA-55-A490-01 12 64833062 64833062 G T XPOT Silent p.L924L 0.31 TCGA-55-A490-01 12 6665027 6665027 C A IFFO1 Missense_Mutation p.G57C 0.63 deleterious(0.02) possibly_damaging(0.639) TCGA-55-A490-01 12 68043620 68043620 G T DYRK2 Silent p.P31P 0.35 TCGA-55-A490-01 12 70946747 70946747 A T PTPRB Missense_Mutation p.Y1733N 0.30 deleterious(0) probably_damaging(1) TCGA-55-A490-01 12 70974880 70974880 G T PTPRB Silent p.S838S 0.20 TCGA-55-A490-01 12 71078507 71078507 A T PTPRR Missense_Mutation p.Y446N 0.16 deleterious(0) probably_damaging(1) TCGA-55-A490-01 12 72425467 72425467 G T TPH2 Missense_Mutation p.G489W 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-A490-01 12 75692720 75692720 A T CAPS2 Missense_Mutation p.L313H 0.27 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 12 77158109 77158109 G C ZDHHC17 Missense_Mutation p.E31D 0.38 deleterious_low_confidence(0.05) benign(0.017) TCGA-55-A490-01 12 7842868 7842868 A T GDF3 Missense_Mutation p.L234Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-55-A490-01 12 81532915 81532915 G T ACSS3 Missense_Mutation p.K217N 0.44 deleterious(0) probably_damaging(0.932) TCGA-55-A490-01 12 81545702 81545702 A G ACSS3 Missense_Mutation p.E334G 0.24 deleterious(0) possibly_damaging(0.639) TCGA-55-A490-01 12 81545704 81545704 G T ACSS3 Splice_Site p.X334_splice 0.23 TCGA-55-A490-01 12 85279220 85279220 G T SLC6A15 Missense_Mutation p.H190N 0.17 tolerated(0.36) benign(0.004) TCGA-55-A490-01 12 88391955 88391955 T C C12orf50 Missense_Mutation p.Q49R 0.31 tolerated(0.09) probably_damaging(0.945) TCGA-55-A490-01 12 91348175 91348175 G T CCER1 Missense_Mutation p.H115Q 0.40 tolerated(0.14) benign(0.006) TCGA-55-A490-01 12 91348367 91348367 C G CCER1 Silent p.P51P 0.10 TCGA-55-A490-01 12 9227310 9227310 G T A2M Missense_Mutation p.A1201D 0.17 deleterious(0) probably_damaging(0.992) TCGA-55-A490-01 12 95694210 95694210 C T VEZT Nonsense_Mutation p.Q701* 0.26 TCGA-55-A490-01 12 97073491 97073491 A T C12orf55 Missense_Mutation p.S1893C 0.16 deleterious(0) possibly_damaging(0.851) TCGA-55-A490-01 13 101890145 101890145 T C NALCN Silent p.V465V 0.26 TCGA-55-A490-01 13 110857862 110857862 G T COL4A1 Missense_Mutation p.D294E 0.36 unknown(0) TCGA-55-A490-01 13 111132573 111132573 C A COL4A2 Missense_Mutation p.P865H 0.23 probably_damaging(0.921) TCGA-55-A490-01 13 114292199 114292199 G T TFDP1 Missense_Mutation p.R358M 0.48 tolerated(0.27) possibly_damaging(0.707) TCGA-55-A490-01 13 114292200 114292200 G T TFDP1 Missense_Mutation p.R358S 0.48 tolerated(0.55) benign(0.206) TCGA-55-A490-01 13 114751245 114751245 T A RASA3 Missense_Mutation p.Y757F 0.67 tolerated(0.06) probably_damaging(0.986) TCGA-55-A490-01 13 19752464 19752464 C T TUBA3C Silent p.A99A 0.29 TCGA-55-A490-01 13 21476838 21476838 G A XPO4 Nonsense_Mutation p.Q14* 0.50 TCGA-55-A490-01 13 28608040 28608040 G A FLT3 Silent p.A642A 0.20 TCGA-55-A490-01 13 29933441 29933441 C A MTUS2 Missense_Mutation p.P993Q 0.45 tolerated(0.16) benign(0.438) TCGA-55-A490-01 13 31735660 31735660 G T HSPH1 Silent p.A20A 0.32 TCGA-55-A490-01 13 33638186 33638186 A C KL Missense_Mutation p.T968P 0.17 tolerated(0.27) benign(0.001) TCGA-55-A490-01 13 33703277 33703277 T C STARD13 Missense_Mutation p.T513A 0.21 tolerated(0.5) benign(0) TCGA-55-A490-01 13 37006764 37006764 G T CCNA1 Missense_Mutation p.E2D 0.62 tolerated_low_confidence(0.13) benign(0) TCGA-55-A490-01 13 38161053 38161053 T A POSTN Missense_Mutation p.N207Y 0.33 deleterious(0) probably_damaging(1) TCGA-55-A490-01 13 39448656 39448656 G T FREM2 Missense_Mutation p.E2738D 0.23 tolerated(0.79) benign(0.001) TCGA-55-A490-01 13 41508027 41508027 T C ELF1 Missense_Mutation p.K465R 0.26 tolerated(0.31) probably_damaging(0.995) TCGA-55-A490-01 13 42277488 42277488 C A VWA8 Missense_Mutation p.G1059V 0.80 tolerated(0.26) benign(0.005) TCGA-55-A490-01 13 48986459 48986459 G T LPAR6 Missense_Mutation p.S34Y 0.31 deleterious(0.04) benign(0.189) TCGA-55-A490-01 13 50141335 50141335 G A RCBTB1 Silent p.F27F 0.40 TCGA-55-A490-01 13 51969545 51969545 G C INTS6 Silent p.L168L 0.12 TCGA-55-A490-01 13 53217179 53217179 A G HNRNPA1L2 Silent p.Q184Q 0.24 TCGA-55-A490-01 14 101492129 101492129 G T MIR323A RNA 0.38 TCGA-55-A490-01 14 101515003 101515003 C G MIR544A RNA 0.19 TCGA-55-A490-01 14 105213454 105213454 G C ADSSL1 3'UTR 0.42 TCGA-55-A490-01 14 19553804 19553804 G A POTEG Missense_Mutation p.E130K 0.07 deleterious(0.04) possibly_damaging(0.776) TCGA-55-A490-01 14 20295856 20295856 G T OR4N2 Silent p.V83V 0.50 TCGA-55-A490-01 14 20811812 20811812 G T PARP2 Silent p.R4R 0.36 TCGA-55-A490-01 14 21424287 21424287 T C RNASE2 Silent p.N119N 0.21 TCGA-55-A490-01 14 21498852 21498852 G A TPPP2 Missense_Mutation p.G38S 0.19 tolerated(0.06) possibly_damaging(0.895) TCGA-55-A490-01 14 21825479 21825479 T A SUPT16H Missense_Mutation p.E846V 0.47 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 14 22133580 22133580 A T OR4E2 Missense_Mutation p.D95V 0.17 tolerated(0.37) benign(0.421) TCGA-55-A490-01 14 22315380 22315380 T C TRAV8-2 Silent p.A106A 0.19 TCGA-55-A490-01 14 22520788 22520788 C A TRAV21 Silent p.T3T 0.50 TCGA-55-A490-01 14 22580354 22580354 T G TRAV25 5'UTR 0.52 TCGA-55-A490-01 14 22965938 22965938 G T TRAJ44 3'Flank 0.12 TCGA-55-A490-01 14 23021058 23021058 C A AE000662.92 5'Flank 0.45 TCGA-55-A490-01 14 23021059 23021059 C A AE000662.92 5'Flank 0.47 TCGA-55-A490-01 14 23521746 23521746 T C CDH24 Silent p.T433T 0.42 TCGA-55-A490-01 14 23521747 23521747 G T CDH24 Missense_Mutation p.T433K 0.41 deleterious(0.03) probably_damaging(0.999) TCGA-55-A490-01 14 23564635 23564635 G A C14orf119 5'UTR 0.44 TCGA-55-A490-01 14 23894586 23894586 C T MYH7 Missense_Mutation p.M776I 0.49 deleterious(0) benign(0.038) TCGA-55-A490-01 14 24030508 24030508 G C AP1G2 Missense_Mutation p.P664A 0.19 tolerated(0.29) benign(0) TCGA-55-A490-01 14 24809080 24809080 G A RIPK3 5'UTR 0.55 TCGA-55-A490-01 14 25101304 25101304 C A GZMB Silent p.R120R 0.23 TCGA-55-A490-01 14 25101305 25101305 C A GZMB Missense_Mutation p.R120L 0.23 tolerated(1) benign(0.002) TCGA-55-A490-01 14 29237645 29237645 C A FOXG1 Nonsense_Mutation p.S387* 0.53 TCGA-55-A490-01 14 31416424 31416424 C A STRN3 Silent p.R196R 0.42 TCGA-55-A490-01 14 38295535 38295535 A G TTC6 Missense_Mutation p.I1704V 0.18 deleterious(0.04) probably_damaging(0.97) TCGA-55-A490-01 14 38724658 38724658 C G CLEC14A Missense_Mutation p.L190F 0.58 tolerated(0.06) probably_damaging(0.991) TCGA-55-A490-01 14 39790161 39790161 G T CTAGE5 Missense_Mutation p.G530C 0.23 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 14 42360867 42360867 C A LRFN5 Silent p.A600A 0.19 TCGA-55-A490-01 14 51208307 51208307 C A NIN Missense_Mutation p.G1814V 0.13 tolerated(0.07) benign(0.023) TCGA-55-A490-01 14 51448566 51448566 A C TRIM9 Missense_Mutation p.V620G 0.58 deleterious(0) probably_damaging(0.979) TCGA-55-A490-01 14 55455827 55455827 G C WDHD1 Nonsense_Mutation p.S482* 0.55 TCGA-55-A490-01 14 58785524 58785524 G T ARID4A Splice_Site p.X150_splice 0.41 TCGA-55-A490-01 14 59112482 59112482 C A DACT1 Missense_Mutation p.P381T 0.13 tolerated(1) benign(0.001) TCGA-55-A490-01 14 60977881 60977881 G T SIX6 Missense_Mutation p.V218F 0.54 tolerated(0.1) benign(0.001) TCGA-55-A490-01 14 62567417 62567417 G T SYT16 Nonsense_Mutation p.E644* 0.12 TCGA-55-A490-01 14 63269055 63269055 G C KCNH5 Missense_Mutation p.A605G 0.12 deleterious(0.03) probably_damaging(0.938) TCGA-55-A490-01 14 68048818 68048818 C T PLEKHH1 Missense_Mutation p.T1106M 0.32 deleterious(0.02) probably_damaging(0.912) TCGA-55-A490-01 14 70252970 70252970 G C SLC10A1 Silent p.L137L 0.57 TCGA-55-A490-01 14 74823886 74823886 C A VRTN Missense_Mutation p.R134S 0.33 tolerated(0.06) probably_damaging(0.997) TCGA-55-A490-01 14 75367870 75367870 C - DLST Frame_Shift_Del p.P389Lfs*18 0.30 TCGA-55-A490-01 14 77935577 77935577 C T AHSA1 Silent p.G334G 0.16 TCGA-55-A490-01 14 77935583 77935583 C G AHSA1 Silent p.R336R 0.17 TCGA-55-A490-01 14 79423597 79423597 A T NRXN3 Missense_Mutation p.E390V 0.28 deleterious(0) probably_damaging(0.963) TCGA-55-A490-01 14 81969147 81969147 C A SEL1L Missense_Mutation p.G232V 0.38 deleterious(0) probably_damaging(0.996) TCGA-55-A490-01 14 90756769 90756769 C A NRDE2 Missense_Mutation p.K675N 0.43 tolerated(0.07) benign(0.13) TCGA-55-A490-01 14 91282590 91282590 C G TTC7B Missense_Mutation p.C17S 0.39 tolerated(0.13) benign(0.272) TCGA-55-A490-01 14 92471927 92471927 G A TRIP11 Missense_Mutation p.S798F 0.20 deleterious(0.02) possibly_damaging(0.902) TCGA-55-A490-01 14 94044188 94044188 G T UNC79 Missense_Mutation p.V561L 0.38 tolerated(0.15) benign(0.332) TCGA-55-A490-01 14 94046586 94046586 C T UNC79 Missense_Mutation p.P665L 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-55-A490-01 14 94069700 94069700 C A UNC79 Missense_Mutation p.S1053R 0.18 deleterious(0.03) probably_damaging(0.998) TCGA-55-A490-01 14 94718218 94718218 C A PPP4R4 Missense_Mutation p.P617Q 0.41 deleterious(0.01) possibly_damaging(0.802) TCGA-55-A490-01 14 94770680 94770680 C T SERPINA6 3'UTR 0.22 TCGA-55-A490-01 14 94915114 94915114 T C SERPINA11 Intron 0.21 TCGA-55-A490-01 14 95057196 95057196 C A SERPINA5 Missense_Mutation p.S334Y 0.10 deleterious(0) possibly_damaging(0.648) TCGA-55-A490-01 14 96129986 96129986 C A TCL6 RNA 0.44 TCGA-55-A490-01 14 96730966 96730966 G T BDKRB1 Missense_Mutation p.G316V 0.11 deleterious(0) probably_damaging(0.997) TCGA-55-A490-01 15 101432774 101432774 G T ALDH1A3 Missense_Mutation p.E135D 0.22 tolerated(0.77) benign(0.074) TCGA-55-A490-01 15 22939266 22939266 G T CYFIP1 Missense_Mutation p.R331L 0.16 deleterious(0.02) benign(0.018) TCGA-55-A490-01 15 27571981 27571981 C G GABRG3 Missense_Mutation p.A99G 0.18 tolerated(0.34) probably_damaging(0.996) TCGA-55-A490-01 15 29346286 29346286 A T APBA2 Missense_Mutation p.S67C 0.31 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-55-A490-01 15 34648672 34648672 G - NUTM1 Frame_Shift_Del p.A794Qfs*4 0.17 TCGA-55-A490-01 15 34673670 34673670 C A GOLGA8A Missense_Mutation p.G585V 0.27 deleterious(0) probably_damaging(0.994) TCGA-55-A490-01 15 35275470 35275470 C A ZNF770 Nonsense_Mutation p.E56* 0.24 TCGA-55-A490-01 15 38643837 38643837 G T SPRED1 Missense_Mutation p.C436F 0.26 deleterious(0) unknown(0) TCGA-55-A490-01 15 41762493 41762493 G T RTF1 Nonsense_Mutation p.E310* 0.26 TCGA-55-A490-01 15 42042358 42042358 A T MGA Nonsense_Mutation p.K2185* 0.27 TCGA-55-A490-01 15 45661524 45661524 C A GATM Missense_Mutation p.G162C 0.19 deleterious(0) probably_damaging(1) TCGA-55-A490-01 15 49659651 49659651 T C FAM227B Missense_Mutation p.Q422R 0.23 tolerated(0.57) benign(0.001) TCGA-55-A490-01 15 50152288 50152288 T A ATP8B4 3'UTR 0.22 TCGA-55-A490-01 15 50886681 50886681 A G TRPM7 Silent p.S1140S 0.45 TCGA-55-A490-01 15 51041053 51041053 C G SPPL2A Missense_Mutation p.L64F 0.33 deleterious(0) probably_damaging(1) TCGA-55-A490-01 15 58902554 58902554 C A ADAM10 Missense_Mutation p.R656M 0.27 deleterious(0) probably_damaging(0.926) TCGA-55-A490-01 15 59502771 59502771 C G MYO1E Missense_Mutation p.W435S 0.21 deleterious(0) probably_damaging(1) TCGA-55-A490-01 15 65350890 65350890 G T RASL12 Silent p.V100V 0.25 TCGA-55-A490-01 15 65680855 65680855 C A IGDCC4 Missense_Mutation p.R926L 0.28 tolerated(0.11) possibly_damaging(0.81) TCGA-55-A490-01 15 71125350 71125350 C A LARP6 Missense_Mutation p.V173F 0.21 deleterious(0) possibly_damaging(0.724) TCGA-55-A490-01 15 71535338 71535338 G T THSD4 Missense_Mutation p.G272V 0.24 deleterious(0.04) benign(0.034) TCGA-55-A490-01 15 72144532 72144532 C G MYO9A Missense_Mutation p.R2139P 0.27 deleterious(0) probably_damaging(0.973) TCGA-55-A490-01 15 72668433 72668433 C A HEXA 5'UTR 0.27 TCGA-55-A490-01 15 74625100 74625100 C A CCDC33 Missense_Mutation p.L618M 0.34 deleterious(0.02) possibly_damaging(0.663) TCGA-55-A490-01 15 74836554 74836554 G C ARID3B Missense_Mutation p.E93Q 0.19 tolerated(0.07) possibly_damaging(0.506) TCGA-55-A490-01 15 75586708 75586708 G T GOLGA6D Silent p.L658L 0.28 TCGA-55-A490-01 15 75968675 75968675 C G CSPG4 Missense_Mutation p.R2062P 0.36 tolerated(0.09) possibly_damaging(0.545) TCGA-55-A490-01 15 78213930 78213930 G T RP11-114H24.7 Intron 0.24 TCGA-55-A490-01 15 81565482 81565482 G A IL16 Missense_Mutation p.G243R 0.18 deleterious(0) probably_damaging(1) TCGA-55-A490-01 15 81592789 81592789 C A IL16 Missense_Mutation p.S1041Y 0.26 tolerated(0.78) benign(0.006) TCGA-55-A490-01 15 83330576 83330576 C A AP3B2 Splice_Site p.X987_splice 0.25 TCGA-55-A490-01 15 83931831 83931831 G A BNC1 Silent p.I724I 0.22 TCGA-55-A490-01 15 84651142 84651142 G T ADAMTSL3 Missense_Mutation p.R921I 0.29 tolerated(0.29) probably_damaging(1) TCGA-55-A490-01 15 84694096 84694096 G T ADAMTSL3 Missense_Mutation p.V1522L 0.31 tolerated(0.42) benign(0.004) TCGA-55-A490-01 15 85383659 85383659 A T ALPK3 Silent p.T585T 0.27 TCGA-55-A490-01 15 90026426 90026426 C T RHCG Missense_Mutation p.V132M 0.16 deleterious(0.02) possibly_damaging(0.663) TCGA-55-A490-01 16 1255176 1255176 G A CACNA1H Silent p.L838L 0.29 TCGA-55-A490-01 16 1270532 1270532 C T CACNA1H Silent p.D2200D 0.25 TCGA-55-A490-01 16 1389589 1389589 C T BAIAP3 Silent p.L166L 0.39 TCGA-55-A490-01 16 1479206 1479206 G A C16orf91 Missense_Mutation p.A47V 0.15 deleterious_low_confidence(0.01) benign(0.006) TCGA-55-A490-01 16 18861343 18861343 C A SMG1 Missense_Mutation p.V1797L 0.29 deleterious(0) probably_damaging(0.976) TCGA-55-A490-01 16 19621667 19621667 G T C16orf62 Missense_Mutation p.R407L 0.29 deleterious(0) probably_damaging(0.997) TCGA-55-A490-01 16 20335219 20335219 C A GP2 Missense_Mutation p.V152L 0.37 deleterious(0.01) possibly_damaging(0.701) TCGA-55-A490-01 16 20441105 20441105 C G ACSM5 Silent p.G369G 0.21 TCGA-55-A490-01 16 20576044 20576044 C A ACSM2B Missense_Mutation p.A42S 0.45 deleterious(0) benign(0.035) TCGA-55-A490-01 16 20681177 20681177 G A ACSM1 Missense_Mutation p.P295L 0.24 deleterious(0.04) possibly_damaging(0.833) TCGA-55-A490-01 16 2090150 2090150 C T NTHL1 Missense_Mutation p.E267K 0.13 deleterious(0) possibly_damaging(0.893) TCGA-55-A490-01 16 20976221 20976221 C A DNAH3 Silent p.L2995L 0.37 TCGA-55-A490-01 16 20976260 20976260 G T DNAH3 Silent p.T2982T 0.38 TCGA-55-A490-01 16 2150186 2150186 C G PKD1 Missense_Mutation p.E3231D 0.12 probably_damaging(0.959) TCGA-55-A490-01 16 2152079 2152079 C A PKD1 Missense_Mutation p.G3127V 0.53 probably_damaging(1) TCGA-55-A490-01 16 2158299 2158299 T A PKD1 Missense_Mutation p.D2290V 0.22 benign(0.125) TCGA-55-A490-01 16 2158457 2158457 C A PKD1 Silent p.G2237G 0.33 TCGA-55-A490-01 16 22337459 22337459 C T POLR3E Missense_Mutation p.L576F 0.43 tolerated(0.12) possibly_damaging(0.594) TCGA-55-A490-01 16 24231279 24231279 C A PRKCB 3'UTR 0.30 TCGA-55-A490-01 16 24583299 24583299 G T RBBP6 Nonsense_Mutation p.E1638* 0.36 TCGA-55-A490-01 16 24802810 24802810 A T TNRC6A Missense_Mutation p.Q949H 0.35 tolerated(0.14) benign(0.001) TCGA-55-A490-01 16 27363913 27363913 G A IL4R Missense_Mutation p.S189N 0.16 tolerated(0.36) benign(0.001) TCGA-55-A490-01 16 2817766 2817766 G C SRRM2 Missense_Mutation p.A2413P 0.14 probably_damaging(0.991) TCGA-55-A490-01 16 28509318 28509318 G T APOBR Splice_Site p.X985_splice 0.41 TCGA-55-A490-01 16 28884519 28884519 G A SH2B1 Intron 0.14 TCGA-55-A490-01 16 28969957 28969957 G T NFATC2IP Intron 0.31 TCGA-55-A490-01 16 28970311 28970311 G T NFATC2IP Splice_Site p.X331_splice 0.13 TCGA-55-A490-01 16 29884968 29884968 G C SEZ6L2 Silent p.V729V 0.22 TCGA-55-A490-01 16 31477831 31477831 G T ARMC5 Missense_Mutation p.C810F 0.45 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 16 3533407 3533407 G C NAA60 Missense_Mutation p.A128P 0.35 tolerated(0.2) possibly_damaging(0.585) TCGA-55-A490-01 16 4016222 4016222 T A ADCY9 Missense_Mutation p.I1206F 0.37 deleterious(0) probably_damaging(0.967) TCGA-55-A490-01 16 47294596 47294596 C A ITFG1 Missense_Mutation p.A361S 0.46 tolerated(0.14) possibly_damaging(0.588) TCGA-55-A490-01 16 49670951 49670951 C A ZNF423 Silent p.V704V 0.43 TCGA-55-A490-01 16 5106094 5106094 G C C16orf89 Missense_Mutation p.I241M 0.25 tolerated(0.15) benign(0.037) TCGA-55-A490-01 16 53358029 53358029 C G CHD9 Missense_Mutation p.A2623G 0.39 unknown(0) TCGA-55-A490-01 16 538969 538969 G T RAB11FIP3 Missense_Mutation p.G412C 0.11 tolerated(0.17) possibly_damaging(0.76) TCGA-55-A490-01 16 55735808 55735808 C A SLC6A2 Missense_Mutation p.H598N 0.33 tolerated(0.1) benign(0.244) TCGA-55-A490-01 16 57113515 57113515 G C NLRC5 Silent p.T1765T 0.58 TCGA-55-A490-01 16 599730 599730 G T CAPN15 Missense_Mutation p.G653V 0.25 deleterious(0) probably_damaging(0.956) TCGA-55-A490-01 16 71318899 71318899 C A CMTR2 Nonsense_Mutation p.G309* 0.80 TCGA-55-A490-01 16 71408718 71408718 G C CALB2 Missense_Mutation p.G81A 0.71 deleterious(0.02) possibly_damaging(0.831) TCGA-55-A490-01 16 7629897 7629897 A T RBFOX1 Missense_Mutation p.D150V 0.22 deleterious(0) probably_damaging(0.976) TCGA-55-A490-01 16 76528951 76528951 A C CNTNAP4 Missense_Mutation p.D669A 0.76 deleterious(0.04) benign(0.226) TCGA-55-A490-01 16 775484 775484 G A CCDC78 Missense_Mutation p.P122S 0.39 tolerated(0.42) benign(0.079) TCGA-55-A490-01 16 777537 777537 G C HAGHL Missense_Mutation p.E10Q 0.35 tolerated(0.3) possibly_damaging(0.693) TCGA-55-A490-01 16 814909 814909 C T MSLN Missense_Mutation p.P128L 0.12 tolerated(0.08) possibly_damaging(0.753) TCGA-55-A490-01 16 82131908 82131908 C T HSD17B2 Missense_Mutation p.A344V 0.51 tolerated(0.13) benign(0.043) TCGA-55-A490-01 16 86545012 86545012 C A FOXF1 Missense_Mutation p.N279K 0.54 tolerated(0.2) benign(0.027) TCGA-55-A490-01 16 86601425 86601425 C A FOXC2 Missense_Mutation p.L162M 0.57 deleterious(0) probably_damaging(0.995) TCGA-55-A490-01 17 10304097 10304097 C A MYH8 Splice_Site p.X1116_splice 0.35 TCGA-55-A490-01 17 10442632 10442632 C T MYH2 Missense_Mutation p.E436K 0.54 deleterious(0) possibly_damaging(0.693) TCGA-55-A490-01 17 10538316 10538316 T C MYH3 Silent p.Q1399Q 0.24 TCGA-55-A490-01 17 11511621 11511621 C A DNAH9 Missense_Mutation p.A198E 0.57 benign(0.004) TCGA-55-A490-01 17 11607717 11607717 T C DNAH9 Silent p.D1783D 0.17 TCGA-55-A490-01 17 11672503 11672503 G T DNAH9 Missense_Mutation p.R2470L 0.55 benign(0.025) TCGA-55-A490-01 17 11672529 11672529 A G DNAH9 Missense_Mutation p.T2479A 0.56 benign(0.005) TCGA-55-A490-01 17 1494731 1494731 G T SLC43A2 Missense_Mutation p.H255N 0.65 tolerated(0.1) possibly_damaging(0.826) TCGA-55-A490-01 17 1558656 1558656 C A PRPF8 Missense_Mutation p.G1992V 0.57 deleterious(0.02) possibly_damaging(0.814) TCGA-55-A490-01 17 1558657 1558657 C A PRPF8 Missense_Mutation p.G1992C 0.57 tolerated(0.38) benign(0.208) TCGA-55-A490-01 17 16842891 16842892 CA - TNFRSF13B Frame_Shift_Del p.V284Afs*120 0.50 TCGA-55-A490-01 17 16852292 16852292 G T TNFRSF13B Missense_Mutation p.L69I 0.45 deleterious(0.04) possibly_damaging(0.896) TCGA-55-A490-01 17 26574520 26574520 G T CTD-2008P7.8 RNA 0.31 TCGA-55-A490-01 17 26817755 26817755 G A SLC13A2 Silent p.L184L 0.09 TCGA-55-A490-01 17 26821467 26821467 G A SLC13A2 Silent p.Q464Q 0.34 TCGA-55-A490-01 17 27493467 27493467 C A MYO18A Silent p.S164S 0.44 TCGA-55-A490-01 17 29233219 29233219 C A TEFM 5'UTR 0.40 TCGA-55-A490-01 17 31618819 31618819 C T ASIC2 Silent p.S105S 0.34 TCGA-55-A490-01 17 32597377 32597377 C T CCL7 Missense_Mutation p.A23V 0.33 deleterious(0) possibly_damaging(0.87) TCGA-55-A490-01 17 33266230 33266230 A T CCT6B Silent p.L395L 0.24 TCGA-55-A490-01 17 3337086 3337086 A T OR1E2 Missense_Mutation p.L17Q 0.58 deleterious(0) probably_damaging(0.97) TCGA-55-A490-01 17 33434071 33434071 C A RAD51D Missense_Mutation p.G159V 0.38 deleterious(0) probably_damaging(0.998) TCGA-55-A490-01 17 3343583 3343583 C T SPATA22 Missense_Mutation p.G317D 0.76 deleterious(0) probably_damaging(0.991) TCGA-55-A490-01 17 33464163 33464163 G T NLE1 Silent p.R229R 0.45 TCGA-55-A490-01 17 33464164 33464164 C T NLE1 Silent p.V228V 0.45 TCGA-55-A490-01 17 34182383 34182383 A G C17orf66 Missense_Mutation p.I466T 0.41 tolerated(1) benign(0.001) TCGA-55-A490-01 17 34185975 34185975 C A C17orf66 Missense_Mutation p.G286C 0.15 tolerated(0.06) probably_damaging(0.996) TCGA-55-A490-01 17 36876112 36876112 C T MLLT6 Silent p.L707L 0.19 TCGA-55-A490-01 17 37563814 37563814 C A MED1 Missense_Mutation p.A1554S 0.33 tolerated_low_confidence(1) unknown(0) TCGA-55-A490-01 17 37563815 37563815 A G MED1 Silent p.S1553S 0.32 TCGA-55-A490-01 17 38520082 38520082 G A CTD-2267D19.3 Silent p.A298A 0.40 TCGA-55-A490-01 17 39538478 39538478 C A KRT34 Silent p.L49L 0.29 TCGA-55-A490-01 17 39670873 39670873 C A KRT15 Intron 0.24 TCGA-55-A490-01 17 39670874 39670874 C T KRT15 Intron 0.25 TCGA-55-A490-01 17 39973310 39973311 - T FKBP10 Frame_Shift_Ins p.Y83Lfs*2 0.14 TCGA-55-A490-01 17 40733881 40733881 C A FAM134C Missense_Mutation p.D451Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 17 41003334 41003334 G C AOC3 5'UTR 0.36 TCGA-55-A490-01 17 41367825 41367825 G T TMEM106A Silent p.L98L 0.35 TCGA-55-A490-01 17 42239317 42239317 G T C17orf53 3'UTR 0.10 TCGA-55-A490-01 17 43367931 43367931 C A MAP3K14 RNA 0.33 TCGA-55-A490-01 17 43531197 43531197 C A PLEKHM1 Missense_Mutation p.W674L 0.31 deleterious(0) possibly_damaging(0.728) TCGA-55-A490-01 17 43545799 43545799 G A PLEKHM1 Nonsense_Mutation p.Q362* 0.46 TCGA-55-A490-01 17 4356453 4356453 C T SPNS3 Missense_Mutation p.L356F 0.62 tolerated(0.07) possibly_damaging(0.653) TCGA-55-A490-01 17 43912172 43912172 G T CRHR1 3'UTR 0.45 TCGA-55-A490-01 17 45351865 45351865 G A ITGB3 Missense_Mutation p.D54N 0.14 tolerated(0.08) benign(0.255) TCGA-55-A490-01 17 45925246 45925246 C A SP6 Missense_Mutation p.G184W 0.15 deleterious(0.03) possibly_damaging(0.86) TCGA-55-A490-01 17 48264873 48264873 G C COL1A1 Missense_Mutation p.S1132C 0.30 unknown(0) TCGA-55-A490-01 17 48696027 48696027 G A CACNA1G Silent p.R1813R 0.31 TCGA-55-A490-01 17 48762201 48762201 G A ABCC3 Silent p.L1415L 0.10 TCGA-55-A490-01 17 5071277 5071277 G T USP6 Missense_Mutation p.E1029D 0.52 deleterious_low_confidence(0.05) probably_damaging(0.981) TCGA-55-A490-01 17 5323479 5323479 G T RPAIN 5'Flank 0.67 TCGA-55-A490-01 17 53398224 53398224 G A HLF Missense_Mutation p.R291K 0.18 tolerated(0.89) benign(0.004) TCGA-55-A490-01 17 5424867 5424867 G A NLRP1 Missense_Mutation p.P1254S 0.18 deleterious(0) probably_damaging(1) TCGA-55-A490-01 17 54558177 54558177 C T ANKFN1 Nonsense_Mutation p.Q700* 0.29 TCGA-55-A490-01 17 55339531 55339531 T A MSI2 Missense_Mutation p.F97Y 0.15 deleterious(0.02) benign(0.396) TCGA-55-A490-01 17 55945511 55945511 G T CUEDC1 Nonsense_Mutation p.S345* 0.31 TCGA-55-A490-01 17 56276478 56276478 A T EPX Missense_Mutation p.T400S 0.08 tolerated(0.22) benign(0.003) TCGA-55-A490-01 17 56692697 56692697 C T TEX14 Nonsense_Mutation p.W265* 0.35 TCGA-55-A490-01 17 57089793 57089793 C G TRIM37 Missense_Mutation p.G864A 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.806) TCGA-55-A490-01 17 57288527 57288527 C G SMG8 Missense_Mutation p.P372R 0.15 tolerated(0.16) benign(0.163) TCGA-55-A490-01 17 57746155 57746155 G T CLTC Nonsense_Mutation p.G716* 0.29 TCGA-55-A490-01 17 59118183 59118183 G T BCAS3 Silent p.P668P 0.18 TCGA-55-A490-01 17 59445780 59445780 G A BCAS3 Missense_Mutation p.E855K 0.11 deleterious(0.01) benign(0.036) TCGA-55-A490-01 17 59557321 59557321 G T TBX4 Missense_Mutation p.R261L 0.27 deleterious(0) possibly_damaging(0.877) TCGA-55-A490-01 17 60518052 60518052 A G METTL2A Silent p.P248P 0.33 TCGA-55-A490-01 17 60767528 60767528 C T MRC2 Missense_Mutation p.P1252S 0.36 tolerated(0.8) benign(0) TCGA-55-A490-01 17 60802428 60802428 A T MARCH10 Missense_Mutation p.C659S 0.41 deleterious(0) probably_damaging(1) TCGA-55-A490-01 17 61771008 61771008 C T MAP3K3 Silent p.T615T 0.08 TCGA-55-A490-01 17 61904196 61904196 C T FTSJ3 Missense_Mutation p.G23S 0.43 deleterious(0) probably_damaging(0.994) TCGA-55-A490-01 17 64880922 64880922 G T CACNG5 Intron 0.15 TCGA-55-A490-01 17 66899627 66899627 C A ABCA8 Missense_Mutation p.L764F 0.27 tolerated(0.73) benign(0.027) TCGA-55-A490-01 17 67016573 67016573 A T ABCA9 Silent p.V852V 0.16 TCGA-55-A490-01 17 67178890 67178890 C T ABCA10 Missense_Mutation p.D853N 0.26 deleterious(0.01) probably_damaging(0.986) TCGA-55-A490-01 17 67197767 67197767 G C ABCA10 Missense_Mutation p.S350C 0.21 deleterious(0.02) possibly_damaging(0.873) TCGA-55-A490-01 17 71335030 71335030 G T SDK2 Missense_Mutation p.S2072Y 0.09 deleterious(0) probably_damaging(0.998) TCGA-55-A490-01 17 72246116 72246116 C A TTYH2 Silent p.I324I 0.10 TCGA-55-A490-01 17 72436921 72436921 A T GPRC5C Missense_Mutation p.M381L 0.08 tolerated(0.12) possibly_damaging(0.544) TCGA-55-A490-01 17 72443039 72443039 G T GPRC5C Missense_Mutation p.V445L 0.34 tolerated_low_confidence(0.17) benign(0.234) TCGA-55-A490-01 17 7250478 7250478 C G ACAP1 Missense_Mutation p.C420W 0.24 deleterious(0) probably_damaging(1) TCGA-55-A490-01 17 72537695 72537696 - T CD300C 3'UTR 0.28 TCGA-55-A490-01 17 7369684 7369684 G T ZBTB4 Missense_Mutation p.A146D 0.24 possibly_damaging(0.908) TCGA-55-A490-01 17 73735960 73735960 G A ITGB4 Splice_Site p.X752_splice 0.38 TCGA-55-A490-01 17 74071306 74071306 C T GALR2 Silent p.F114F 0.26 TCGA-55-A490-01 17 7415814 7415814 G T POLR2A Missense_Mutation p.G1504V 0.73 possibly_damaging(0.689) TCGA-55-A490-01 17 74621582 74621582 C A ST6GALNAC1 Missense_Mutation p.G545C 0.35 probably_damaging(0.999) TCGA-55-A490-01 17 7669696 7669696 C A DNAH2 Missense_Mutation p.A1191D 0.64 benign(0.101) TCGA-55-A490-01 17 76803211 76803211 C A USP36 Missense_Mutation p.D639Y 0.14 deleterious(0.01) possibly_damaging(0.744) TCGA-55-A490-01 17 78327429 78327429 A G RNF213 Missense_Mutation p.K3514R 0.38 benign(0.001) TCGA-55-A490-01 17 7945724 7945724 G A ALOX15B Missense_Mutation p.D163N 0.66 tolerated(0.68) benign(0.012) TCGA-55-A490-01 17 79671276 79671276 G T SLC25A10 Missense_Mutation p.R26L 0.35 tolerated_low_confidence(0.1) benign(0) TCGA-55-A490-01 17 79801924 79801924 T A P4HB Missense_Mutation p.E497D 0.21 tolerated(0.17) probably_damaging(0.97) TCGA-55-A490-01 17 7983352 7983352 G T AC129492.6 Missense_Mutation p.R11S 0.83 benign(0.001) TCGA-55-A490-01 17 80445933 80445933 A C NARF Missense_Mutation p.E424A 0.33 tolerated(0.05) benign(0.11) TCGA-55-A490-01 17 9801522 9801522 C A RCVRN Splice_Site p.X165_splice 0.43 TCGA-55-A490-01 18 14851567 14851567 G T ANKRD30B Missense_Mutation p.K1089N 0.27 deleterious(0.03) probably_damaging(0.978) TCGA-55-A490-01 18 21214026 21214026 C G ANKRD29 Missense_Mutation p.D140H 0.47 tolerated(0.35) probably_damaging(0.99) TCGA-55-A490-01 18 22669429 22669429 C A ZNF521 Missense_Mutation p.Q1302H 0.24 deleterious(0) benign(0.014) TCGA-55-A490-01 18 22804558 22804558 G T ZNF521 Missense_Mutation p.N1108K 0.19 tolerated(0.77) benign(0.35) TCGA-55-A490-01 18 22804680 22804680 C A ZNF521 Missense_Mutation p.A1068S 0.23 tolerated(0.19) benign(0.008) TCGA-55-A490-01 18 22806450 22806450 G T ZNF521 Missense_Mutation p.Q478K 0.17 tolerated(0.2) possibly_damaging(0.633) TCGA-55-A490-01 18 29056005 29056005 C A DSG3 Missense_Mutation p.H928N 0.29 deleterious(0.01) benign(0.035) TCGA-55-A490-01 18 30092374 30092374 G A WBP11P1 RNA 0.19 TCGA-55-A490-01 18 30092818 30092818 C A WBP11P1 RNA 0.27 TCGA-55-A490-01 18 33272144 33272144 G T GALNT1 Splice_Site p.X387_splice 0.31 TCGA-55-A490-01 18 33795717 33795717 G T MOCOS Missense_Mutation p.G525V 0.22 tolerated(0.31) benign(0.002) TCGA-55-A490-01 18 48252397 48252397 C G MAPK4 Missense_Mutation p.L307V 0.36 deleterious(0) probably_damaging(0.987) TCGA-55-A490-01 18 54694338 54694338 G T WDR7 Missense_Mutation p.G1458V 0.36 tolerated(0.43) probably_damaging(0.999) TCGA-55-A490-01 18 5489096 5489096 C A EPB41L3 Silent p.A29A 0.26 TCGA-55-A490-01 18 55027468 55027468 G T ST8SIA3 Missense_Mutation p.G368V 0.35 benign(0.038) TCGA-55-A490-01 18 58039475 58039475 A T MC4R Silent p.S36S 0.42 TCGA-55-A490-01 18 63511183 63511183 G T CDH7 Nonsense_Mutation p.E373* 0.30 TCGA-55-A490-01 18 6943297 6943297 G T LAMA1 Missense_Mutation p.N2983K 0.10 tolerated(0.2) benign(0.068) TCGA-55-A490-01 18 6948535 6948535 G A LAMA1 Silent p.A2859A 0.29 TCGA-55-A490-01 18 6975018 6975018 C A LAMA1 Silent p.V2169V 0.48 TCGA-55-A490-01 18 7025980 7025980 G T LAMA1 Missense_Mutation p.N800K 0.60 deleterious(0) probably_damaging(0.998) TCGA-55-A490-01 18 74617120 74617120 A T ZNF236 Silent p.T680T 0.46 TCGA-55-A490-01 18 76753759 76753759 G T SALL3 Missense_Mutation p.G590W 0.50 deleterious(0.01) probably_damaging(0.94) TCGA-55-A490-01 19 1008896 1008896 C A GRIN3B Nonsense_Mutation p.S891* 0.53 TCGA-55-A490-01 19 10265615 10265615 T A DNMT1 Missense_Mutation p.D537V 0.23 deleterious(0.01) benign(0.326) TCGA-55-A490-01 19 10694626 10694626 C A AP1M2 Missense_Mutation p.V55F 0.50 tolerated(0.09) possibly_damaging(0.839) TCGA-55-A490-01 19 11565617 11565617 C T ELAVL3 Silent p.S276S 0.44 TCGA-55-A490-01 19 12759990 12759990 T C MAN2B1 Missense_Mutation p.Q799R 0.20 deleterious(0.01) probably_damaging(0.956) TCGA-55-A490-01 19 12858360 12858360 A T ASNA1 Missense_Mutation p.K290M 0.29 deleterious(0) possibly_damaging(0.806) TCGA-55-A490-01 19 12903687 12903687 C T JUNB 3'UTR 0.23 TCGA-55-A490-01 19 13869919 13869919 G A CCDC130 Missense_Mutation p.E136K 0.18 deleterious(0.01) probably_damaging(0.969) TCGA-55-A490-01 19 14829435 14829435 G T ZNF333 Silent p.T432T 0.49 TCGA-55-A490-01 19 15226101 15226101 C A ILVBL Missense_Mutation p.G621W 0.20 deleterious(0) probably_damaging(0.986) TCGA-55-A490-01 19 15302575 15302575 C T NOTCH3 Silent p.Q261Q 0.13 TCGA-55-A490-01 19 15302576 15302576 T G NOTCH3 Missense_Mutation p.Q261P 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-55-A490-01 19 15511761 15511761 T A AKAP8L Missense_Mutation p.N304Y 0.20 deleterious(0) probably_damaging(0.979) TCGA-55-A490-01 19 15587314 15587314 G T PGLYRP2 Nonsense_Mutation p.S56* 0.14 TCGA-55-A490-01 19 15730464 15730464 G T CYP4F8 RNA 0.20 TCGA-55-A490-01 19 15990436 15990436 G T CYP4F2 Missense_Mutation p.P431Q 0.17 deleterious(0.02) possibly_damaging(0.829) TCGA-55-A490-01 19 16178526 16178526 C A TPM4 Missense_Mutation p.A31D 0.15 tolerated(0.69) possibly_damaging(0.484) TCGA-55-A490-01 19 17737456 17737456 G T UNC13A Missense_Mutation p.D1353E 0.60 tolerated(0.18) benign(0.015) TCGA-55-A490-01 19 17973773 17973773 G A RPL18A Silent p.Q125Q 0.42 TCGA-55-A490-01 19 18274194 18274194 C T PIK3R2 Missense_Mutation p.S471F 0.16 deleterious(0) probably_damaging(0.978) TCGA-55-A490-01 19 19337842 19337842 C T NCAN Silent p.P540P 0.39 TCGA-55-A490-01 19 19378819 19378819 G T TM6SF2 Silent p.G229G 0.18 TCGA-55-A490-01 19 22941658 22941658 G A ZNF99 Silent p.S351S 0.27 TCGA-55-A490-01 19 2917794 2917794 A G ZNF57 Missense_Mutation p.Y392C 0.11 deleterious(0) possibly_damaging(0.573) TCGA-55-A490-01 19 31768656 31768656 C - TSHZ3 Frame_Shift_Del p.S682Afs*14 0.21 TCGA-55-A490-01 19 31769222 31769222 C T TSHZ3 Missense_Mutation p.E493K 0.20 tolerated(0.12) benign(0.169) TCGA-55-A490-01 19 3293496 3293496 G T CELF5 Intron 0.61 TCGA-55-A490-01 19 35823740 35823740 G T CD22 Missense_Mutation p.V109L 0.43 tolerated(0.2) benign(0.034) TCGA-55-A490-01 19 35827245 35827245 G T CD22 Splice_Site p.X240_splice 0.16 TCGA-55-A490-01 19 35941414 35941414 C A FFAR2 Silent p.A266A 0.15 TCGA-55-A490-01 19 36004049 36004049 C T DMKN Missense_Mutation p.G110E 0.54 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 19 36168764 36168764 C A UPK1A Silent p.I233I 0.41 TCGA-55-A490-01 19 36214652 36214652 G T KMT2B Silent p.T1026T 0.44 TCGA-55-A490-01 19 36227814 36227814 G T KMT2B Silent p.G2433G 0.40 TCGA-55-A490-01 19 36228974 36228974 A T KMT2B Missense_Mutation p.H2585L 0.56 benign(0.183) TCGA-55-A490-01 19 36333429 36333429 G C NPHS1 Missense_Mutation p.S786R 0.40 tolerated(0.07) benign(0.281) TCGA-55-A490-01 19 36900690 36900690 A T ZFP82 Translation_Start_Site p.M1? 0.48 deleterious(0) benign(0.276) TCGA-55-A490-01 19 37118440 37118440 G T ZNF382 Silent p.T547T 0.24 TCGA-55-A490-01 19 37314599 37314599 A G ZNF790 Silent p.L35L 0.11 TCGA-55-A490-01 19 38876589 38876589 G A GGN Missense_Mutation p.P438L 0.36 tolerated_low_confidence(0.15) unknown(0) TCGA-55-A490-01 19 39100299 39100299 G C MAP4K1 Missense_Mutation p.P315A 0.43 tolerated(0.08) benign(0.074) TCGA-55-A490-01 19 39322147 39322147 C A ECH1 Missense_Mutation p.G21V 0.26 tolerated_low_confidence(0.08) benign(0.053) TCGA-55-A490-01 19 40331307 40331307 C A FBL Missense_Mutation p.G44V 0.21 deleterious_low_confidence(0.04) unknown(0) TCGA-55-A490-01 19 40402203 40402203 C G FCGBP Silent p.V1732V 0.15 TCGA-55-A490-01 19 42388518 42388518 C T ARHGEF1 5'UTR 0.17 TCGA-55-A490-01 19 42600075 42600075 C A POU2F2 Missense_Mutation p.V224L 0.18 deleterious(0) probably_damaging(0.99) TCGA-55-A490-01 19 43414766 43414766 G T PSG6 Silent p.A224A 0.50 TCGA-55-A490-01 19 46294313 46294313 C - DMWD Frame_Shift_Del p.I159Sfs*52 0.24 TCGA-55-A490-01 19 47991436 47991436 C A NAPA 3'UTR 0.31 TCGA-55-A490-01 19 48377975 48377975 C A SULT2A1 Missense_Mutation p.M228I 0.43 deleterious(0.03) benign(0.342) TCGA-55-A490-01 19 48389592 48389592 C A SULT2A1 5'UTR 0.50 TCGA-55-A490-01 19 48565406 48565406 C A PLA2G4C Missense_Mutation p.G379V 0.29 deleterious(0.03) benign(0.047) TCGA-55-A490-01 19 4944410 4944410 A G UHRF1 RNA 0.45 TCGA-55-A490-01 19 49540088 49540088 T A CTB-60B18.6 5'UTR 0.41 TCGA-55-A490-01 19 4954742 4954742 A G UHRF1 RNA 0.29 TCGA-55-A490-01 19 49548253 49548253 G T CGB5 Missense_Mutation p.G67V 0.27 tolerated(0.59) benign(0.044) TCGA-55-A490-01 19 49548254 49548254 G T CGB5 Silent p.G67G 0.26 TCGA-55-A490-01 19 49968019 49968019 G T ALDH16A1 Missense_Mutation p.S523I 0.21 tolerated(0.06) possibly_damaging(0.866) TCGA-55-A490-01 19 49994179 49994179 G T RPL13A Intron 0.41 TCGA-55-A490-01 19 50149816 50149816 G T SCAF1 Missense_Mutation p.G99W 0.17 unknown(0) TCGA-55-A490-01 19 50245236 50245236 A T TSKS Missense_Mutation p.L468Q 0.49 deleterious(0) possibly_damaging(0.871) TCGA-55-A490-01 19 50657932 50657932 G C IZUMO2 Missense_Mutation p.P183R 0.37 tolerated(0.61) benign(0) TCGA-55-A490-01 19 51133391 51133391 G T SYT3 Missense_Mutation p.L238M 0.50 tolerated(0.27) benign(0.374) TCGA-55-A490-01 19 51274704 51274704 C T GPR32 Missense_Mutation p.R283W 0.17 tolerated(0.19) benign(0.005) TCGA-55-A490-01 19 51295010 51295010 C A ACPT Missense_Mutation p.A134D 0.22 deleterious(0.01) benign(0.405) TCGA-55-A490-01 19 51323215 51323215 C T KLK1 Silent p.Q191Q 0.21 TCGA-55-A490-01 19 51381675 51381675 C T KLK2 Missense_Mutation p.P216S 0.17 deleterious(0) probably_damaging(0.991) TCGA-55-A490-01 19 51499457 51499457 C G KLK8 Missense_Mutation p.G259A 0.40 deleterious(0.01) probably_damaging(0.985) TCGA-55-A490-01 19 51585997 51585997 A T KLK14 Missense_Mutation p.L3Q 0.49 deleterious_low_confidence(0) possibly_damaging(0.902) TCGA-55-A490-01 19 52133195 52133195 G T SIGLEC5 Missense_Mutation p.S104R 0.19 tolerated(0.31) benign(0.118) TCGA-55-A490-01 19 53208015 53208015 C G ZNF611 3'UTR 0.38 TCGA-55-A490-01 19 53208390 53208390 G A ZNF611 Missense_Mutation p.H640Y 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-55-A490-01 19 53740319 53740319 T C ZNF677 Missense_Mutation p.Q554R 0.30 tolerated(0.24) benign(0.074) TCGA-55-A490-01 19 54194135 54194135 C G MIR520A RNA 0.16 TCGA-55-A490-01 19 54312898 54312898 G A NLRP12 Missense_Mutation p.A672V 0.27 tolerated(0.28) benign(0.173) TCGA-55-A490-01 19 54313572 54313572 C A NLRP12 Silent p.P447P 0.45 TCGA-55-A490-01 19 54377020 54377020 C A MYADM Silent p.T79T 0.16 TCGA-55-A490-01 19 54416111 54416111 T C CACNG7 Missense_Mutation p.L9P 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-55-A490-01 19 5456379 5456379 A T ZNRF4 Missense_Mutation p.T293S 0.31 tolerated(0.53) benign(0.009) TCGA-55-A490-01 19 5456735 5456735 C A ZNRF4 Silent p.S411S 0.29 TCGA-55-A490-01 19 54697083 54697083 G T TSEN34 Missense_Mutation p.D267Y 0.37 deleterious(0.01) probably_damaging(0.979) TCGA-55-A490-01 19 54756368 54756368 C A LILRB5 Missense_Mutation p.D507Y 0.31 deleterious(0.02) possibly_damaging(0.673) TCGA-55-A490-01 19 54802051 54802051 C A LILRA3 Missense_Mutation p.Q379H 0.72 deleterious(0) probably_damaging(0.972) TCGA-55-A490-01 19 54967272 54967272 G C LENG8 Silent p.T384T 0.19 TCGA-55-A490-01 19 55147201 55147201 G C AC009892.10 3'UTR 0.55 TCGA-55-A490-01 19 55174469 55174469 C A LILRB4 5'UTR 0.21 TCGA-55-A490-01 19 55494874 55494874 A T NLRP2 Missense_Mutation p.Q603L 0.52 tolerated(0.1) benign(0.021) TCGA-55-A490-01 19 55512357 55512357 C A NLRP2 3'UTR 0.17 TCGA-55-A490-01 19 55685987 55685987 G T SYT5 Silent p.G286G 0.13 TCGA-55-A490-01 19 55693237 55693237 C G PTPRH Missense_Mutation p.R1078P 0.38 probably_damaging(0.972) TCGA-55-A490-01 19 56135914 56135914 C A ZNF784 Missense_Mutation p.R5L 0.56 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-55-A490-01 19 56369781 56369781 C A NLRP4 Missense_Mutation p.P341Q 0.42 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 19 56369782 56369782 G T NLRP4 Silent p.P341P 0.42 TCGA-55-A490-01 19 56701184 56701184 C A ZSCAN5B 3'UTR 0.38 TCGA-55-A490-01 19 56732913 56732913 T G ZSCAN5A 3'UTR 0.46 TCGA-55-A490-01 19 5684828 5684828 A T HSD11B1L Splice_Site 0.16 TCGA-55-A490-01 19 56934737 56934737 A G ZNF583 Missense_Mutation p.E237G 0.25 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 19 57985769 57985769 C A ZNF772 Missense_Mutation p.D115Y 0.34 deleterious(0.02) benign(0.413) TCGA-55-A490-01 19 58024455 58024455 G A ZNF773 3'Flank 0.20 TCGA-55-A490-01 19 58117237 58117237 G T ZNF530 Missense_Mutation p.G115V 0.35 tolerated(0.33) benign(0.059) TCGA-55-A490-01 19 5867136 5867136 C A FUT5 Missense_Mutation p.A201S 0.24 tolerated(0.22) possibly_damaging(0.461) TCGA-55-A490-01 19 58772809 58772809 C T ZNF544 Silent p.F279F 0.36 TCGA-55-A490-01 19 58983207 58983207 G T ZNF324 Nonsense_Mutation p.E450* 0.29 TCGA-55-A490-01 19 6387450 6387450 C A GTF2F1 Silent p.L149L 0.18 TCGA-55-A490-01 19 6496002 6496002 C A TUBB4A Missense_Mutation p.V170L 0.20 tolerated_low_confidence(0.29) benign(0.009) TCGA-55-A490-01 19 7623912 7623912 C T PNPLA6 Missense_Mutation p.R1202C 0.18 deleterious(0.01) probably_damaging(0.952) TCGA-55-A490-01 19 7623913 7623913 G T PNPLA6 Missense_Mutation p.R1202L 0.19 deleterious(0) probably_damaging(0.996) TCGA-55-A490-01 19 7707910 7707910 G A STXBP2 Silent p.P334P 0.24 TCGA-55-A490-01 19 7808995 7808995 G T CD209 Silent p.P337P 0.18 TCGA-55-A490-01 19 7975956 7975956 A C MAP2K7 Missense_Mutation p.Q256P 0.10 deleterious(0.02) benign(0.425) TCGA-55-A490-01 19 815828 815828 G A LPPR3 Silent p.I33I 0.47 TCGA-55-A490-01 19 8495557 8495557 G T MARCH2 Missense_Mutation p.G130W 0.25 deleterious(0) probably_damaging(1) TCGA-55-A490-01 19 9003572 9003572 C T MUC16 Silent p.Q13356Q 0.37 TCGA-55-A490-01 19 9011442 9011442 G T MUC16 Missense_Mutation p.L12931I 0.18 possibly_damaging(0.859) TCGA-55-A490-01 19 9048742 9048742 A T MUC16 Silent p.P10963P 0.24 TCGA-55-A490-01 19 9060123 9060123 G T MUC16 Nonsense_Mutation p.S9108* 0.18 TCGA-55-A490-01 19 9074424 9074424 G T MUC16 Missense_Mutation p.T4341N 0.48 unknown(0) TCGA-55-A490-01 19 9088250 9088250 G T MUC16 Silent p.R1189R 0.42 TCGA-55-A490-01 19 9960080 9960080 G C PIN1 3'UTR 0.24 TCGA-55-A490-01 1 103380339 103380339 C A COL11A1 Missense_Mutation p.G1282V 0.35 unknown(0) TCGA-55-A490-01 1 103431059 103431059 C A COL11A1 Missense_Mutation p.G967V 0.10 unknown(0) TCGA-55-A490-01 1 103431060 103431060 C A COL11A1 Nonsense_Mutation p.G967* 0.10 TCGA-55-A490-01 1 103468329 103468329 C A COL11A1 Missense_Mutation p.G673C 0.37 unknown(0) TCGA-55-A490-01 1 109366271 109366271 G T AKNAD1 Missense_Mutation p.T659N 0.36 tolerated(0.19) benign(0.073) TCGA-55-A490-01 1 109777947 109777947 A T SARS Missense_Mutation p.E288V 0.24 deleterious(0.05) benign(0.405) TCGA-55-A490-01 1 11151196 11151196 C A EXOSC10 Missense_Mutation p.R173L 0.15 deleterious(0) possibly_damaging(0.851) TCGA-55-A490-01 1 113235502 113235502 C A MOV10 Missense_Mutation p.P364H 0.57 deleterious(0.01) benign(0.053) TCGA-55-A490-01 1 115222944 115222944 G T AMPD1 Missense_Mutation p.P268T 0.23 deleterious(0.01) possibly_damaging(0.529) TCGA-55-A490-01 1 11576119 11576119 A T PTCHD2 Silent p.P550P 0.38 TCGA-55-A490-01 1 117311190 117311190 C A CD2 Missense_Mutation p.H281N 0.19 tolerated(0.61) benign(0.403) TCGA-55-A490-01 1 11769488 11769488 C A DRAXIN Missense_Mutation p.S203Y 0.50 deleterious(0.01) probably_damaging(0.974) TCGA-55-A490-01 1 118461306 118461306 C A GDAP2 Nonsense_Mutation p.E77* 0.32 TCGA-55-A490-01 1 119925620 119925620 C T HAO2 Missense_Mutation p.P72S 0.29 deleterious(0) probably_damaging(1) TCGA-55-A490-01 1 119964805 119964805 C A HSD3B2 Missense_Mutation p.N227K 0.17 deleterious(0) probably_damaging(0.997) TCGA-55-A490-01 1 12806406 12806406 C A C1orf158 Missense_Mutation p.P10T 0.34 tolerated(0.19) benign(0.013) TCGA-55-A490-01 1 12837586 12837586 T A PRAMEF12 Silent p.L432L 0.18 TCGA-55-A490-01 1 12943078 12943078 G T PRAMEF4 Missense_Mutation p.F46L 0.58 deleterious(0.02) probably_damaging(0.994) TCGA-55-A490-01 1 13036298 13036298 C A PRAMEF22 Missense_Mutation p.L124M 0.38 tolerated(0.22) probably_damaging(0.951) TCGA-55-A490-01 1 145367816 145367816 G A NBPF10 Missense_Mutation p.C3471Y 0.10 probably_damaging(0.943) TCGA-55-A490-01 1 147380215 147380216 - GG GJA8 Frame_Shift_Ins p.D47Gfs*45 0.19 TCGA-55-A490-01 1 149871826 149871826 G C BOLA1 Missense_Mutation p.V72L 0.22 tolerated(0.07) possibly_damaging(0.498) TCGA-55-A490-01 1 150131101 150131101 G A PLEKHO1 Missense_Mutation p.E205K 0.63 tolerated(0.41) benign(0.006) TCGA-55-A490-01 1 1509984 1509984 T A SSU72 5'UTR 0.31 TCGA-55-A490-01 1 151001290 151001290 C A PRUNE Missense_Mutation p.A268E 0.16 tolerated(0.84) benign(0.008) TCGA-55-A490-01 1 152187527 152187527 C A HRNR Missense_Mutation p.G2193V 0.15 unknown(0) TCGA-55-A490-01 1 152192514 152192514 T A HRNR Missense_Mutation p.S531C 0.59 unknown(0) TCGA-55-A490-01 1 152192733 152192733 C A HRNR Missense_Mutation p.G458C 0.61 unknown(0) TCGA-55-A490-01 1 152277654 152277654 G T FLG Silent p.S3236S 0.20 TCGA-55-A490-01 1 152278262 152278262 G T FLG Missense_Mutation p.H3034N 0.35 benign(0) TCGA-55-A490-01 1 152278837 152278837 C A FLG Missense_Mutation p.R2842L 0.13 benign(0.049) TCGA-55-A490-01 1 152280360 152280360 G T FLG Missense_Mutation p.H2334Q 0.11 possibly_damaging(0.537) TCGA-55-A490-01 1 152284258 152284258 G T FLG Missense_Mutation p.S1035Y 0.19 probably_damaging(0.998) TCGA-55-A490-01 1 152330003 152330003 T C FLG2 Missense_Mutation p.K87E 0.53 unknown(0) TCGA-55-A490-01 1 152484371 152484371 G T LCE5A 3'UTR 0.54 TCGA-55-A490-01 1 152552254 152552254 G T LCE3D Missense_Mutation p.F53L 0.10 tolerated_low_confidence(0.08) unknown(0) TCGA-55-A490-01 1 152749117 152749117 C G LCE1F Silent p.P90P 0.25 TCGA-55-A490-01 1 152957731 152957731 C A SPRR1A Missense_Mutation p.P9T 0.17 tolerated(0.06) unknown(0) TCGA-55-A490-01 1 153012529 153012529 G T SPRR2D 3'UTR 0.12 TCGA-55-A490-01 1 153909160 153909160 C A DENND4B Missense_Mutation p.C766F 0.58 deleterious(0.01) benign(0.051) TCGA-55-A490-01 1 154127555 154127555 C A NUP210L 5'UTR 0.15 TCGA-55-A490-01 1 15430524 15430524 C A KAZN Nonsense_Mutation p.Y629* 0.43 TCGA-55-A490-01 1 155112639 155112639 C G DPM3 Missense_Mutation p.L56F 0.07 tolerated(0.08) possibly_damaging(0.505) TCGA-55-A490-01 1 155160949 155160949 A C MUC1 Missense_Mutation p.V193G 0.63 tolerated(0.45) probably_damaging(0.927) TCGA-55-A490-01 1 156621399 156621399 C G BCAN Missense_Mutation p.I405M 0.31 deleterious(0.02) possibly_damaging(0.505) TCGA-55-A490-01 1 156784878 156784878 G T SH2D2A Missense_Mutation p.L87M 0.25 deleterious(0.04) possibly_damaging(0.754) TCGA-55-A490-01 1 156811529 156811529 C A INSRR Missense_Mutation p.G1152V 0.38 deleterious(0) probably_damaging(1) TCGA-55-A490-01 1 157516897 157516897 C A FCRL5 Missense_Mutation p.R48L 0.20 tolerated(0.29) benign(0.013) TCGA-55-A490-01 1 157559030 157559030 G T FCRL4 Missense_Mutation p.P91T 0.24 tolerated(0.73) benign(0.265) TCGA-55-A490-01 1 157670368 157670368 G C FCRL3 5'UTR 0.28 TCGA-55-A490-01 1 158299205 158299205 C A CD1B Missense_Mutation p.V281L 0.17 deleterious(0) probably_damaging(0.995) TCGA-55-A490-01 1 158325877 158325877 G T CD1E Missense_Mutation p.D296Y 0.11 deleterious(0) probably_damaging(1) TCGA-55-A490-01 1 158576488 158576488 G T OR10Z1 Missense_Mutation p.G87V 0.25 tolerated(0.16) benign(0) TCGA-55-A490-01 1 158614045 158614045 G C SPTA1 Missense_Mutation p.Q1446E 0.12 deleterious(0) possibly_damaging(0.804) TCGA-55-A490-01 1 158648313 158648313 A T SPTA1 Silent p.P230P 0.38 TCGA-55-A490-01 1 158651361 158651361 A T SPTA1 Missense_Mutation p.Y163N 0.32 deleterious(0) probably_damaging(0.988) TCGA-55-A490-01 1 158651405 158651405 A T SPTA1 Missense_Mutation p.L148Q 0.22 tolerated(0.75) benign(0.002) TCGA-55-A490-01 1 158687842 158687842 C A OR6K3 Missense_Mutation p.D22Y 0.19 deleterious(0.03) benign(0.373) TCGA-55-A490-01 1 158725116 158725116 C A OR6K6 Missense_Mutation p.Q171K 0.37 tolerated(0.29) benign(0.033) TCGA-55-A490-01 1 159283779 159283779 G T OR10J3 Missense_Mutation p.S224Y 0.14 deleterious(0.02) possibly_damaging(0.883) TCGA-55-A490-01 1 159410095 159410095 A C OR10J1 Missense_Mutation p.K183Q 0.19 tolerated(0.52) benign(0.024) TCGA-55-A490-01 1 159779194 159779194 C A FCRL6 Missense_Mutation p.P203T 0.33 deleterious(0) probably_damaging(0.995) TCGA-55-A490-01 1 160012206 160012206 C G KCNJ10 Silent p.V39V 0.33 TCGA-55-A490-01 1 160146332 160146332 A G ATP1A4 Missense_Mutation p.N844D 0.25 tolerated(0.33) benign(0.022) TCGA-55-A490-01 1 160276211 160276211 C A COPA Missense_Mutation p.A459S 0.33 deleterious(0.02) benign(0.183) TCGA-55-A490-01 1 160293299 160293299 A T COPA Missense_Mutation p.W210R 0.32 deleterious(0) probably_damaging(0.993) TCGA-55-A490-01 1 160518043 160518043 A T CD84 3'UTR 0.26 TCGA-55-A490-01 1 16258537 16258537 G T SPEN Missense_Mutation p.L1934F 0.28 probably_damaging(0.997) TCGA-55-A490-01 1 17046636 17046636 C A ESPNP RNA 0.11 TCGA-55-A490-01 1 17046637 17046637 C A ESPNP RNA 0.11 TCGA-55-A490-01 1 171251409 171251409 C - FMO1 Frame_Shift_Del p.L375Wfs*4 0.17 TCGA-55-A490-01 1 174781081 174781081 C T RABGAP1L Nonsense_Mutation p.Q775* 0.50 TCGA-55-A490-01 1 175304848 175304848 C A TNR Silent p.L1210L 0.14 TCGA-55-A490-01 1 175328801 175328801 T A TNR Missense_Mutation p.K974M 0.18 deleterious(0.02) probably_damaging(0.928) TCGA-55-A490-01 1 175375785 175375785 C G TNR Silent p.L22L 0.47 TCGA-55-A490-01 1 176012321 176012321 C T RFWD2 Splice_Site p.X538_splice 0.36 TCGA-55-A490-01 1 176564578 176564578 G C PAPPA2 Missense_Mutation p.R613P 0.26 deleterious(0.03) probably_damaging(0.996) TCGA-55-A490-01 1 17668573 17668573 G A PADI4 Missense_Mutation p.G263E 0.19 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 1 176738781 176738781 C A PAPPA2 Missense_Mutation p.D1454E 0.22 deleterious(0) benign(0.345) TCGA-55-A490-01 1 176857216 176857216 G A ASTN1 Missense_Mutation p.P1022L 0.26 tolerated(0.26) probably_damaging(0.999) TCGA-55-A490-01 1 176913069 176913069 C A ASTN1 Nonsense_Mutation p.E779* 0.32 TCGA-55-A490-01 1 177133713 177133713 C G ASTN1 Missense_Mutation p.E34Q 0.29 tolerated_low_confidence(0.08) possibly_damaging(0.461) TCGA-55-A490-01 1 178426019 178426019 A G RASAL2 Missense_Mutation p.E792G 0.24 tolerated(0.37) possibly_damaging(0.828) TCGA-55-A490-01 1 179077435 179077435 C G ABL2 Silent p.V989V 0.14 TCGA-55-A490-01 1 179561895 179561895 G T TDRD5 Missense_Mutation p.G49W 0.22 deleterious(0) probably_damaging(1) TCGA-55-A490-01 1 180063553 180063553 A G CEP350 Silent p.Q2771Q 0.47 TCGA-55-A490-01 1 181480531 181480531 G A CACNA1E Missense_Mutation p.G133R 0.26 deleterious(0) probably_damaging(0.988) TCGA-55-A490-01 1 182845206 182845206 G T DHX9 Missense_Mutation p.G613C 0.30 deleterious(0.01) possibly_damaging(0.503) TCGA-55-A490-01 1 186276407 186276407 C T PRG4 Missense_Mutation p.P519L 0.18 unknown(0) TCGA-55-A490-01 1 193117012 193117012 A G CDC73 Missense_Mutation p.I249V 0.16 tolerated(0.2) benign(0.116) TCGA-55-A490-01 1 19479826 19479826 C A UBR4 Missense_Mutation p.K2267N 0.38 probably_damaging(0.986) TCGA-55-A490-01 1 19630660 19630660 A G AKR7A2 3'UTR 0.41 TCGA-55-A490-01 1 196659263 196659263 A T CFH Missense_Mutation p.K410N 0.19 tolerated(0.22) benign(0.001) TCGA-55-A490-01 1 196697571 196697571 A T CFH Missense_Mutation p.R778W 0.42 deleterious(0) possibly_damaging(0.615) TCGA-55-A490-01 1 197065255 197065255 T C ASPM Missense_Mutation p.K2954E 0.26 tolerated(0.38) benign(0.013) TCGA-55-A490-01 1 197072367 197072367 C A ASPM Missense_Mutation p.R2005M 0.20 deleterious(0) probably_damaging(0.993) TCGA-55-A490-01 1 197297671 197297671 G T CRB1 Missense_Mutation p.D64Y 0.46 deleterious(0.01) probably_damaging(0.95) TCGA-55-A490-01 1 197396853 197396853 A T CRB1 Missense_Mutation p.I800F 0.25 deleterious(0.02) possibly_damaging(0.87) TCGA-55-A490-01 1 197407705 197407706 - T CRB1 Frame_Shift_Ins p.G1260Vfs*3 0.24 TCGA-55-A490-01 1 197411165 197411165 G A CRB1 Intron 0.25 TCGA-55-A490-01 1 19923507 19923507 C A MINOS1-NBL1 5'UTR 0.45 TCGA-55-A490-01 1 20082253 20082253 T C TMCO4 Missense_Mutation p.Y130C 0.44 deleterious(0) probably_damaging(0.997) TCGA-55-A490-01 1 200959286 200959286 C A KIF21B Missense_Mutation p.V1004L 0.25 tolerated(0.15) benign(0.013) TCGA-55-A490-01 1 201183364 201183364 G T IGFN1 Missense_Mutation p.A2930S 0.25 probably_damaging(0.974) TCGA-55-A490-01 1 202462410 202462410 G C PPP1R12B Missense_Mutation p.G704R 0.25 tolerated(0.38) benign(0.1) TCGA-55-A490-01 1 202917477 202917478 - A ADIPOR1 Frame_Shift_Ins p.Q72Afs*27 0.25 TCGA-55-A490-01 1 203816656 203816656 A G ZC3H11A Missense_Mutation p.T463A 0.33 tolerated(0.81) benign(0.002) TCGA-55-A490-01 1 204095271 204095271 G T SOX13 3'UTR 0.26 TCGA-55-A490-01 1 204518288 204518288 G T MDM4 Missense_Mutation p.K317N 0.25 deleterious(0) probably_damaging(0.998) TCGA-55-A490-01 1 207785158 207785158 G A CR1 Silent p.T2144T 0.48 TCGA-55-A490-01 1 207890990 207890990 G C CR1L Silent p.G532G 0.11 TCGA-55-A490-01 1 207925435 207925435 G A CD46 5'UTR 0.44 TCGA-55-A490-01 1 208315745 208315745 C A PLXNA2 Nonsense_Mutation p.G479* 0.39 TCGA-55-A490-01 1 20879738 20879738 C T FAM43B Missense_Mutation p.T91I 0.15 tolerated(0.13) probably_damaging(0.997) TCGA-55-A490-01 1 209963869 209963869 T G IRF6 Missense_Mutation p.K344T 0.11 deleterious(0) probably_damaging(0.998) TCGA-55-A490-01 1 209968635 209968635 C G IRF6 Missense_Mutation p.G170R 0.31 tolerated(0.2) benign(0.082) TCGA-55-A490-01 1 21071381 21071381 G A HP1BP3 Missense_Mutation p.S524L 0.50 deleterious_low_confidence(0.04) benign(0.02) TCGA-55-A490-01 1 216262481 216262481 C A USH2A Missense_Mutation p.G1587W 0.30 probably_damaging(0.998) TCGA-55-A490-01 1 217856631 217856631 G T SPATA17 Missense_Mutation p.R108L 0.27 deleterious(0) probably_damaging(1) TCGA-55-A490-01 1 22083113 22083113 A G USP48 Missense_Mutation p.L113P 0.07 deleterious(0) probably_damaging(0.979) TCGA-55-A490-01 1 22211356 22211356 C A HSPG2 Nonsense_Mutation p.E471* 0.41 TCGA-55-A490-01 1 223285029 223285029 G T TLR5 Missense_Mutation p.H449N 0.25 tolerated(0.62) benign(0.002) TCGA-55-A490-01 1 223566956 223566956 G T C1orf65 Missense_Mutation p.G47W 0.27 tolerated(0.05) possibly_damaging(0.57) TCGA-55-A490-01 1 227842658 227842658 C T ZNF678 Missense_Mutation p.P236L 0.21 deleterious(0.05) benign(0.082) TCGA-55-A490-01 1 228505740 228505740 G T OBSCN Missense_Mutation p.G5623V 0.49 possibly_damaging(0.578) TCGA-55-A490-01 1 2290142 2290142 C A MORN1 Missense_Mutation p.R253L 0.28 deleterious(0) probably_damaging(1) TCGA-55-A490-01 1 22965637 22965637 T C C1QA Missense_Mutation p.Y159H 0.19 deleterious(0) probably_damaging(1) TCGA-55-A490-01 1 22965763 22965763 G T C1QA Missense_Mutation p.V201L 0.46 tolerated(0.33) benign(0.002) TCGA-55-A490-01 1 233334745 233334745 A - PCNXL2 Frame_Shift_Del p.S1002Rfs*20 0.29 TCGA-55-A490-01 1 236228241 236228241 C A NID1 Nonsense_Mutation p.E47* 0.39 TCGA-55-A490-01 1 236341876 236341876 C G GPR137B Silent p.L209L 0.31 TCGA-55-A490-01 1 23751196 23751196 G A TCEA3 5'UTR 0.25 TCGA-55-A490-01 1 237550626 237550626 C A RYR2 Missense_Mutation p.Q208K 0.16 possibly_damaging(0.459) TCGA-55-A490-01 1 237550627 237550627 A G RYR2 Missense_Mutation p.Q208R 0.16 possibly_damaging(0.557) TCGA-55-A490-01 1 23842999 23842999 G T E2F2 Silent p.L291L 0.21 TCGA-55-A490-01 1 240071330 240071330 G T CHRM3 Missense_Mutation p.W193C 0.09 deleterious(0) probably_damaging(1) TCGA-55-A490-01 1 244586218 244586218 C T ADSS Silent p.R194R 0.46 TCGA-55-A490-01 1 247151522 247151522 C A ZNF695 Nonsense_Mutation p.E99* 0.29 TCGA-55-A490-01 1 247611746 247611746 G T NLRP3 Silent p.A1017A 0.32 TCGA-55-A490-01 1 248028072 248028072 C A TRIM58 Silent p.A194A 0.45 TCGA-55-A490-01 1 248128906 248128906 C A OR2AK2 Silent p.T91T 0.12 TCGA-55-A490-01 1 248436499 248436499 C A OR2T33 Silent p.L206L 0.11 TCGA-55-A490-01 1 248616536 248616536 G T OR2T2 Silent p.V146V 0.15 TCGA-55-A490-01 1 248617031 248617031 C A OR2T2 Silent p.S311S 0.18 TCGA-55-A490-01 1 248802125 248802125 C A OR2T35 Silent p.V145V 0.52 TCGA-55-A490-01 1 249106449 249106449 C A SH3BP5L Missense_Mutation p.G278C 0.28 deleterious(0.03) possibly_damaging(0.749) TCGA-55-A490-01 1 27099864 27099864 C T ARID1A Missense_Mutation p.S1248L 0.32 unknown(0) TCGA-55-A490-01 1 27709014 27709014 C A CD164L2 Nonsense_Mutation p.E78* 0.23 TCGA-55-A490-01 1 32258000 32258000 G A SPOCD1 Silent p.D926D 0.26 TCGA-55-A490-01 1 3328393 3328393 C T PRDM16 Silent p.D544D 0.29 TCGA-55-A490-01 1 33957077 33957077 G T ZSCAN20 Missense_Mutation p.A407S 0.22 deleterious(0.02) possibly_damaging(0.872) TCGA-55-A490-01 1 33960193 33960193 G T ZSCAN20 Missense_Mutation p.R750L 0.07 tolerated(0.09) benign(0.003) TCGA-55-A490-01 1 34003189 34003189 C A CSMD2 Missense_Mutation p.G3074C 0.32 deleterious(0) probably_damaging(0.997) TCGA-55-A490-01 1 35580819 35580819 G A ZMYM1 Missense_Mutation p.E1130K 0.23 tolerated(0.17) benign(0.013) TCGA-55-A490-01 1 35650074 35650074 T G SFPQ Missense_Mutation p.K703Q 0.12 deleterious(0.01) possibly_damaging(0.788) TCGA-55-A490-01 1 36209101 36209101 T A CLSPN Silent p.G999G 0.19 TCGA-55-A490-01 1 3677916 3677916 G T CCDC27 Missense_Mutation p.E261D 0.23 deleterious(0.01) possibly_damaging(0.801) TCGA-55-A490-01 1 37267392 37267392 C A GRIK3 3'UTR 0.42 TCGA-55-A490-01 1 37975116 37975116 C A MEAF6 Missense_Mutation p.R78S 0.20 deleterious(0) possibly_damaging(0.895) TCGA-55-A490-01 1 38078564 38078564 G T RSPO1 Silent p.R219R 0.18 TCGA-55-A490-01 1 38227596 38227596 C A EPHA10 Missense_Mutation p.D111Y 0.46 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 1 38305674 38305674 T A MTF1 Missense_Mutation p.I189F 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 1 41461604 41461604 G A CTPS1 Missense_Mutation p.D246N 0.47 tolerated(0.08) probably_damaging(0.976) TCGA-55-A490-01 1 43906234 43906234 C T SZT2 Missense_Mutation p.R2384W 0.25 deleterious(0) probably_damaging(0.998) TCGA-55-A490-01 1 45226352 45226352 G C KIF2C Missense_Mutation p.G554A 0.41 deleterious(0) possibly_damaging(0.897) TCGA-55-A490-01 1 46078916 46078916 A T NASP Missense_Mutation p.N501I 0.33 deleterious_low_confidence(0) possibly_damaging(0.563) TCGA-55-A490-01 1 4772033 4772033 G C AJAP1 Missense_Mutation p.A35P 0.19 deleterious(0.01) probably_damaging(0.989) TCGA-55-A490-01 1 51778492 51778492 C A TTC39A Silent p.L94L 0.42 TCGA-55-A490-01 1 52800421 52800421 C G ZFYVE9 Silent p.A1217A 0.31 TCGA-55-A490-01 1 63021549 63021549 T A DOCK7 Missense_Mutation p.Y848F 0.27 deleterious(0.02) possibly_damaging(0.683) TCGA-55-A490-01 1 6528321 6528321 G A PLEKHG5 Missense_Mutation p.R938C 0.50 deleterious_low_confidence(0.02) benign(0.01) TCGA-55-A490-01 1 67147757 67147757 A G SGIP1 Silent p.P340P 0.20 TCGA-55-A490-01 1 67558822 67558822 T A C1orf141 Missense_Mutation p.T357S 0.34 tolerated(0.57) benign(0.016) TCGA-55-A490-01 1 67702456 67702456 C A IL23R Missense_Mutation p.A339D 0.53 tolerated(0.09) benign(0.024) TCGA-55-A490-01 1 70446134 70446134 G T LRRC7 Missense_Mutation p.G224W 0.45 deleterious(0) possibly_damaging(0.838) TCGA-55-A490-01 1 74954897 74954897 G T TNNI3K Missense_Mutation p.V817F 0.17 tolerated(0.06) benign(0.424) TCGA-55-A490-01 1 75009721 75009721 T G TNNI3K 3'UTR 0.44 TCGA-55-A490-01 1 75038591 75038591 C A C1orf173 Missense_Mutation p.G935C 0.42 tolerated(0.05) possibly_damaging(0.719) TCGA-55-A490-01 1 7797500 7797500 G A CAMTA1 Silent p.Q1176Q 0.48 TCGA-55-A490-01 1 7993324 7993324 C A TNFRSF9 Missense_Mutation p.A193S 0.40 tolerated(0.19) benign(0.358) TCGA-55-A490-01 1 89637475 89637475 G A GBP7 Silent p.R48R 0.18 TCGA-55-A490-01 1 90400998 90400998 C T LRRC8D Missense_Mutation p.P791S 0.43 tolerated(1) probably_damaging(0.998) TCGA-55-A490-01 1 91404899 91404899 G A ZNF644 Missense_Mutation p.S671L 0.47 tolerated(0.19) benign(0.14) TCGA-55-A490-01 20 10653406 10653406 C A JAG1 Missense_Mutation p.K110N 0.07 tolerated(0.18) possibly_damaging(0.88) TCGA-55-A490-01 20 11898808 11898809 - A BTBD3 5'UTR 0.39 TCGA-55-A490-01 20 23016609 23016609 C A SSTR4 Silent p.A163A 0.19 TCGA-55-A490-01 20 2411160 2411160 C A TGM6 Missense_Mutation p.L583M 0.69 tolerated(0.16) probably_damaging(0.996) TCGA-55-A490-01 20 2796447 2796447 C G C20orf141 3'UTR 0.51 TCGA-55-A490-01 20 2844844 2844844 G A VPS16 Missense_Mutation p.R544H 0.67 deleterious(0) probably_damaging(0.967) TCGA-55-A490-01 20 29845479 29845479 C A DEFB115 Missense_Mutation p.H5N 0.16 tolerated_low_confidence(0.51) benign(0.254) TCGA-55-A490-01 20 2998538 2998538 C T PTPRA Silent p.T340T 0.29 TCGA-55-A490-01 20 3001989 3001989 G T PTPRA Missense_Mutation p.C359F 0.17 deleterious(0.02) possibly_damaging(0.601) TCGA-55-A490-01 20 30419514 30419514 G C MYLK2 Missense_Mutation p.G478A 0.41 deleterious(0) possibly_damaging(0.903) TCGA-55-A490-01 20 30433162 30433162 A T FOXS1 Missense_Mutation p.W62R 0.32 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 20 30689308 30689308 C A HCK Missense_Mutation p.Q523K 0.21 tolerated(0.09) probably_damaging(0.997) TCGA-55-A490-01 20 31825890 31825890 C A BPIFA1 Missense_Mutation p.L64M 0.20 deleterious(0.01) probably_damaging(0.988) TCGA-55-A490-01 20 33575988 33575988 T A MYH7B Missense_Mutation p.Y546N 0.48 probably_damaging(1) TCGA-55-A490-01 20 3673732 3673732 G T SIGLEC1 Silent p.G1185G 0.50 TCGA-55-A490-01 20 36932694 36932694 C A BPI Silent p.A27A 0.17 TCGA-55-A490-01 20 37535621 37535621 G C PPP1R16B Splice_Site p.X275_splice 0.12 TCGA-55-A490-01 20 40757402 40757402 A G PTPRT Missense_Mutation p.Y947H 0.21 deleterious(0) probably_damaging(0.998) TCGA-55-A490-01 20 42891925 42891925 C A GDAP1L1 Silent p.P201P 0.21 TCGA-55-A490-01 20 44530969 44530969 G T PLTP Missense_Mutation p.A371D 0.21 tolerated(0.13) possibly_damaging(0.493) TCGA-55-A490-01 20 45002146 45002146 C T ELMO2 Silent p.P436P 0.13 TCGA-55-A490-01 20 47601944 47601944 G T ARFGEF2 Splice_Site p.X691_splice 0.19 TCGA-55-A490-01 20 48156132 48156132 T A PTGIS Missense_Mutation p.K216N 0.18 tolerated(0.1) benign(0.086) TCGA-55-A490-01 20 57829460 57829460 C T ZNF831 Missense_Mutation p.H1566Y 0.67 deleterious(0.01) possibly_damaging(0.796) TCGA-55-A490-01 20 60504809 60504809 C T CDH4 Silent p.N716N 0.13 TCGA-55-A490-01 20 60897445 60897445 C A LAMA5 Missense_Mutation p.A2076S 0.24 benign(0.012) TCGA-55-A490-01 20 61512250 61512250 C T DIDO1 Silent p.P1686P 0.22 TCGA-55-A490-01 20 62196855 62196855 G A HELZ2 Missense_Mutation p.A1107V 0.14 tolerated(0.07) possibly_damaging(0.776) TCGA-55-A490-01 21 19737526 19737526 G T TMPRSS15 Missense_Mutation p.S235Y 0.52 deleterious(0) probably_damaging(0.992) TCGA-55-A490-01 21 30547055 30547055 G C MAP3K7CL Missense_Mutation p.D191H 0.14 deleterious(0) probably_damaging(0.979) TCGA-55-A490-01 21 30927398 30927398 G T GRIK1 Nonsense_Mutation p.S861* 0.21 TCGA-55-A490-01 21 31744017 31744017 C A KRTAP13-2 Missense_Mutation p.R172I 0.11 deleterious(0.03) possibly_damaging(0.474) TCGA-55-A490-01 21 31768583 31768583 G T KRTAP13-1 Missense_Mutation p.C60F 0.14 tolerated(0.28) benign(0.098) TCGA-55-A490-01 21 31797818 31797818 G T KRTAP13-3 Missense_Mutation p.P138H 0.42 deleterious(0) probably_damaging(0.998) TCGA-55-A490-01 21 32537369 32537369 G T TIAM1 Nonsense_Mutation p.C967* 0.48 TCGA-55-A490-01 21 32624175 32624175 C A TIAM1 Missense_Mutation p.G432C 0.53 deleterious(0) probably_damaging(1) TCGA-55-A490-01 21 37758467 37758467 C T CHAF1B Silent p.H11H 0.31 TCGA-55-A490-01 21 39755656 39755656 C A ERG Missense_Mutation p.R377L 0.55 deleterious(0) probably_damaging(1) TCGA-55-A490-01 21 40601363 40601363 C A BRWD1 Splice_Site p.X1001_splice 0.44 TCGA-55-A490-01 21 43838704 43838704 G T UBASH3A Silent p.T344T 0.67 TCGA-55-A490-01 21 46925787 46925787 C A COL18A1 Silent p.G1221G 0.30 TCGA-55-A490-01 21 46925788 46925788 C A COL18A1 Missense_Mutation p.Q1222K 0.31 benign(0.013) TCGA-55-A490-01 21 47703707 47703707 C A MCM3AP Missense_Mutation p.S422I 0.48 deleterious(0) possibly_damaging(0.451) TCGA-55-A490-01 22 17688163 17688163 G C CECR1 Missense_Mutation p.H114D 0.12 deleterious(0) probably_damaging(1) TCGA-55-A490-01 22 18222179 18222179 C A BID Missense_Mutation p.S146I 0.18 deleterious(0.04) possibly_damaging(0.875) TCGA-55-A490-01 22 18273594 18273594 C A MICAL3 Silent p.V1971V 0.12 TCGA-55-A490-01 22 18389648 18389648 T A MICAL3 5'UTR 0.53 TCGA-55-A490-01 22 20786093 20786093 C A SCARF2 Silent p.V91V 0.73 TCGA-55-A490-01 22 21174168 21174168 T A PI4KA Missense_Mutation p.I184F 0.69 deleterious(0) benign(0.258) TCGA-55-A490-01 22 22162018 22162018 T A MAPK1 Missense_Mutation p.R79S 0.48 tolerated(0.32) benign(0.005) TCGA-55-A490-01 22 22599624 22599624 C A VPREB1 Missense_Mutation p.L105M 0.19 deleterious(0) probably_damaging(1) TCGA-55-A490-01 22 23029680 23029680 T A IGLV3-25 Missense_Mutation p.S94R 0.15 deleterious(0.04) benign(0.324) TCGA-55-A490-01 22 23406200 23406200 C A RTDR1 Missense_Mutation p.C178F 0.39 deleterious(0) probably_damaging(0.953) TCGA-55-A490-01 22 23742486 23742486 G A ZDHHC8P1 RNA 0.08 TCGA-55-A490-01 22 25313688 25313688 T A SGSM1 Missense_Mutation p.C1053S 0.19 deleterious(0.04) possibly_damaging(0.62) TCGA-55-A490-01 22 25603131 25603131 C T CRYBB3 Silent p.R196R 0.17 TCGA-55-A490-01 22 26351183 26351183 G C MYO18B Missense_Mutation p.M2003I 0.24 deleterious(0) benign(0.167) TCGA-55-A490-01 22 26689043 26689043 G A SEZ6L Missense_Mutation p.E256K 0.36 tolerated(0.08) probably_damaging(0.995) TCGA-55-A490-01 22 26743728 26743728 G C SEZ6L Missense_Mutation p.Q752H 0.21 deleterious(0.04) possibly_damaging(0.819) TCGA-55-A490-01 22 26743761 26743761 G A SEZ6L Silent p.L763L 0.25 TCGA-55-A490-01 22 27021531 27021531 G T CRYBA4 Missense_Mutation p.G82V 0.19 deleterious(0.02) probably_damaging(0.981) TCGA-55-A490-01 22 29446375 29446375 G T ZNRF3 Missense_Mutation p.G736W 0.28 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-55-A490-01 22 31521871 31521871 G T INPP5J Intron 0.16 TCGA-55-A490-01 22 32498078 32498078 G A SLC5A1 Missense_Mutation p.G507R 0.26 tolerated(0.07) possibly_damaging(0.57) TCGA-55-A490-01 22 32647776 32647776 G T SLC5A4 Missense_Mutation p.T98N 0.25 deleterious(0.02) possibly_damaging(0.864) TCGA-55-A490-01 22 32756608 32756608 T A RFPL3 Missense_Mutation p.F248Y 0.19 deleterious(0.05) probably_damaging(0.936) TCGA-55-A490-01 22 32934045 32934045 C T SYN3 Silent p.L323L 0.21 TCGA-55-A490-01 22 33253256 33253256 G A TIMP3 Silent p.K75K 0.10 TCGA-55-A490-01 22 37334110 37334110 G T CSF2RB Nonsense_Mutation p.G754* 0.30 TCGA-55-A490-01 22 38122313 38122313 G T TRIOBP Silent p.G1250G 0.29 TCGA-55-A490-01 22 38284504 38284504 A T EIF3L 3'UTR 0.30 TCGA-55-A490-01 22 40755029 40755029 A G ADSL Missense_Mutation p.D215G 0.25 deleterious(0) probably_damaging(0.915) TCGA-55-A490-01 22 42473551 42473551 T C FAM109B Missense_Mutation p.F85S 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-55-A490-01 22 44527488 44527488 G T PARVB Silent p.A199A 0.32 TCGA-55-A490-01 22 45601101 45601101 C A KIAA0930 Missense_Mutation p.E176D 0.24 tolerated(0.42) benign(0.097) TCGA-55-A490-01 2 100210251 100210251 G T AFF3 Silent p.P649P 0.30 TCGA-55-A490-01 2 103340370 103340370 T C MFSD9 Splice_Site p.X143_splice 0.34 TCGA-55-A490-01 2 107423228 107423228 G T ST6GAL2 Missense_Mutation p.T499K 0.26 benign(0.044) TCGA-55-A490-01 2 107460199 107460199 C A ST6GAL2 Missense_Mutation p.A79S 0.20 benign(0.005) TCGA-55-A490-01 2 108479284 108479284 C A RGPD4 Silent p.T784T 0.21 TCGA-55-A490-01 2 108487824 108487824 C A RGPD4 Missense_Mutation p.P1122T 0.13 deleterious(0) possibly_damaging(0.878) TCGA-55-A490-01 2 108496470 108496470 G T RGPD4 Missense_Mutation p.Q1657H 0.16 deleterious_low_confidence(0.03) benign(0.19) TCGA-55-A490-01 2 1094094 1094094 C A SNTG2 Missense_Mutation p.A108E 0.30 deleterious(0.02) benign(0.424) TCGA-55-A490-01 2 113955460 113955460 C G PSD4 Missense_Mutation p.A865G 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-55-A490-01 2 120206314 120206314 T C SCTR Missense_Mutation p.R322G 0.21 deleterious(0.01) possibly_damaging(0.612) TCGA-55-A490-01 2 121747436 121747436 C G GLI2 Missense_Mutation p.H1316D 0.13 tolerated_low_confidence(0.06) benign(0.036) TCGA-55-A490-01 2 125175058 125175058 C A CNTNAP5 Missense_Mutation p.H140Q 0.20 tolerated(0.79) benign(0.12) TCGA-55-A490-01 2 125204392 125204392 G A CNTNAP5 Missense_Mutation p.D266N 0.25 deleterious(0) probably_damaging(0.998) TCGA-55-A490-01 2 127834262 127834262 C A BIN1 Missense_Mutation p.K35N 0.46 deleterious(0) probably_damaging(0.983) TCGA-55-A490-01 2 130897508 130897508 G T CCDC74B Silent p.A321A 0.34 TCGA-55-A490-01 2 131704407 131704407 G T ARHGEF4 Intron 0.54 TCGA-55-A490-01 2 131798969 131798969 T A ARHGEF4 Missense_Mutation p.V424E 0.23 deleterious(0.01) probably_damaging(1) TCGA-55-A490-01 2 133541256 133541256 C A NCKAP5 Missense_Mutation p.R1043I 0.28 deleterious(0) probably_damaging(0.995) TCGA-55-A490-01 2 135076237 135076237 G T MGAT5 Missense_Mutation p.W167L 0.17 deleterious(0.02) benign(0.053) TCGA-55-A490-01 2 135596280 135596280 C G ACMSD Missense_Mutation p.L10V 0.77 deleterious(0) benign(0.446) TCGA-55-A490-01 2 141004726 141004726 G C LRP1B Missense_Mutation p.S4418C 0.33 possibly_damaging(0.7) TCGA-55-A490-01 2 141115583 141115583 C T LRP1B Missense_Mutation p.C3787Y 0.13 possibly_damaging(0.712) TCGA-55-A490-01 2 141245215 141245215 T C LRP1B Missense_Mutation p.R3072G 0.20 benign(0.415) TCGA-55-A490-01 2 141528565 141528565 G A LRP1B Silent p.S1837S 0.11 TCGA-55-A490-01 2 141641449 141641449 C A LRP1B Missense_Mutation p.R1369I 0.24 benign(0.009) TCGA-55-A490-01 2 141762961 141762961 G T LRP1B Silent p.R816R 0.23 TCGA-55-A490-01 2 15506764 15506764 G A NBAS Missense_Mutation p.P1253S 0.12 tolerated(0.18) benign(0.04) TCGA-55-A490-01 2 158634730 158634730 G T ACVR1 Silent p.R152R 0.09 TCGA-55-A490-01 2 159488309 159488309 G C PKP4 Missense_Mutation p.D400H 0.44 deleterious(0) possibly_damaging(0.548) TCGA-55-A490-01 2 160006929 160006929 A T TANC1 Missense_Mutation p.S182C 0.27 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 2 161056667 161056667 T C ITGB6 5'UTR 0.25 TCGA-55-A490-01 2 165353923 165353923 T A GRB14 Missense_Mutation p.E394D 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-55-A490-01 2 166848428 166848428 A T SCN1A Missense_Mutation p.L1786Q 0.17 deleterious(0) probably_damaging(1) TCGA-55-A490-01 2 167328884 167328884 G T SCN7A Nonsense_Mutation p.S172* 0.31 TCGA-55-A490-01 2 168105500 168105500 C A XIRP2 Missense_Mutation p.P2533Q 0.41 possibly_damaging(0.586) TCGA-55-A490-01 2 170062692 170062692 C A LRP2 Missense_Mutation p.G2466V 0.19 probably_damaging(0.939) TCGA-55-A490-01 2 175618078 175618078 C A CHRNA1 Intron 0.17 TCGA-55-A490-01 2 179454969 179454969 G T TTN Missense_Mutation p.R20495S 0.32 TCGA-55-A490-01 2 179463331 179463331 C G TTN Missense_Mutation p.A19005P 0.23 TCGA-55-A490-01 2 179468881 179468881 C G TTN Missense_Mutation p.R18178P 0.18 TCGA-55-A490-01 2 179498236 179498236 G T TTN Missense_Mutation p.R14284S 0.17 TCGA-55-A490-01 2 179542862 179542862 T C TTN Silent p.P11328P 0.19 TCGA-55-A490-01 2 179665160 179665160 A T TTN Missense_Mutation p.V182D 0.20 TCGA-55-A490-01 2 186671914 186671914 C A FSIP2 Missense_Mutation p.Q6050K 0.17 benign(0.102) TCGA-55-A490-01 2 189875589 189875589 C A COL3A1 Silent p.T1409T 0.40 TCGA-55-A490-01 2 190728661 190728661 G T PMS1 Missense_Mutation p.Q683H 0.48 tolerated(0.34) benign(0.008) TCGA-55-A490-01 2 197964569 197964569 G T ANKRD44 Silent p.T357T 0.30 TCGA-55-A490-01 2 200213476 200213476 C A SATB2 Missense_Mutation p.R374M 0.27 deleterious(0) probably_damaging(0.994) TCGA-55-A490-01 2 205986561 205986561 G A PARD3B Silent p.K351K 0.52 TCGA-55-A490-01 2 206628559 206628559 G C NRP2 Missense_Mutation p.A736P 0.22 tolerated(0.91) possibly_damaging(0.873) TCGA-55-A490-01 2 207509374 207509374 T A AC010731.4 Splice_Site 0.31 TCGA-55-A490-01 2 209025676 209025676 A G CRYGA Missense_Mutation p.V126A 0.50 deleterious(0.02) probably_damaging(0.994) TCGA-55-A490-01 2 210641979 210641979 C G UNC80 Intron 0.14 TCGA-55-A490-01 2 210650818 210650818 G T UNC80 Missense_Mutation p.S210I 0.08 probably_damaging(0.922) TCGA-55-A490-01 2 211070520 211070520 C A ACADL Missense_Mutation p.V202L 0.32 deleterious(0.01) possibly_damaging(0.724) TCGA-55-A490-01 2 21257705 21257705 C A APOB Missense_Mutation p.S296I 0.35 probably_damaging(0.997) TCGA-55-A490-01 2 214727351 214727351 A T SPAG16 Missense_Mutation p.S405C 0.20 deleterious(0.04) benign(0.076) TCGA-55-A490-01 2 219029259 219029259 G T CXCR1 Missense_Mutation p.L226M 0.15 tolerated(0.17) possibly_damaging(0.457) TCGA-55-A490-01 2 220164870 220164870 G A PTPRN Missense_Mutation p.P425S 0.43 tolerated(0.72) benign(0.002) TCGA-55-A490-01 2 220349130 220349130 G C SPEG Missense_Mutation p.R2315S 0.19 possibly_damaging(0.889) TCGA-55-A490-01 2 220354210 220354210 C - SPEG Frame_Shift_Del p.T2826Hfs*78 0.20 TCGA-55-A490-01 2 220366640 220366640 G T GMPPA Missense_Mutation p.A104S 0.39 tolerated(0.81) benign(0.017) TCGA-55-A490-01 2 224776980 224776980 C A WDFY1 Missense_Mutation p.G90V 0.27 deleterious(0) probably_damaging(0.962) TCGA-55-A490-01 2 226378246 226378246 A G NYAP2 Silent p.T127T 0.18 TCGA-55-A490-01 2 228846456 228846456 C T SPHKAP Missense_Mutation p.D1694N 0.23 deleterious(0) probably_damaging(1) TCGA-55-A490-01 2 232325455 232325455 C A NCL Missense_Mutation p.D246Y 0.35 benign(0.002) TCGA-55-A490-01 2 232373737 232373737 C A LINC00471 RNA 0.22 TCGA-55-A490-01 2 232457817 232457817 C A C2orf57 Missense_Mutation p.A52D 0.19 deleterious(0.04) probably_damaging(0.958) TCGA-55-A490-01 2 235949692 235949692 G A SH3BP4 Nonsense_Mutation p.W93* 0.31 TCGA-55-A490-01 2 238244986 238244986 A T COL6A3 Silent p.A2919A 0.21 TCGA-55-A490-01 2 238277416 238277416 G A COL6A3 Missense_Mutation p.R1564C 0.39 probably_damaging(0.915) TCGA-55-A490-01 2 240036915 240036915 T A HDAC4 Missense_Mutation p.D537V 0.26 tolerated(0.1) benign(0.04) TCGA-55-A490-01 2 241835041 241835041 G T C2orf54 Missense_Mutation p.T125N 0.22 tolerated(0.06) benign(0.255) TCGA-55-A490-01 2 242695429 242695429 G T D2HGDH Nonsense_Mutation p.G436* 0.22 TCGA-55-A490-01 2 25505412 25505412 C A DNMT3A Missense_Mutation p.A116S 0.41 tolerated(0.39) benign(0.001) TCGA-55-A490-01 2 27430330 27430330 G A SLC5A6 Silent p.D63D 0.22 TCGA-55-A490-01 2 27707895 27707895 C A IFT172 Nonsense_Mutation p.G96* 0.42 TCGA-55-A490-01 2 27799503 27799503 C A C2orf16 Missense_Mutation p.Q22K 0.23 tolerated(0.06) benign(0.018) TCGA-55-A490-01 2 27803570 27803570 C A C2orf16 Missense_Mutation p.D1377E 0.30 deleterious(0.04) possibly_damaging(0.622) TCGA-55-A490-01 2 28825742 28825742 C T PLB1 Nonsense_Mutation p.Q910* 0.17 TCGA-55-A490-01 2 32145866 32145866 C T MEMO1 Splice_Site p.X109_splice 0.38 TCGA-55-A490-01 2 33036261 33036261 G T TTC27 Missense_Mutation p.Q723H 0.20 tolerated(0.21) benign(0.004) TCGA-55-A490-01 2 33588554 33588554 G T LTBP1 Silent p.T1456T 0.13 TCGA-55-A490-01 2 33745748 33745748 G A RASGRP3 Missense_Mutation p.S122N 0.12 tolerated(0.63) benign(0.157) TCGA-55-A490-01 2 33952547 33952547 A T AC009499.1 Intron 0.17 TCGA-55-A490-01 2 3660901 3660901 G T COLEC11 Missense_Mutation p.G58V 0.33 deleterious(0) probably_damaging(1) TCGA-55-A490-01 2 37505040 37505040 C A PRKD3 Missense_Mutation p.W422L 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-55-A490-01 2 39492386 39492386 T A MAP4K3 Silent p.L698L 0.16 TCGA-55-A490-01 2 40342734 40342734 G T SLC8A1 Missense_Mutation p.Q861K 0.43 tolerated(0.52) benign(0.085) TCGA-55-A490-01 2 44078921 44078921 G C ABCG8 Missense_Mutation p.R174P 0.14 deleterious(0.01) possibly_damaging(0.478) TCGA-55-A490-01 2 45169427 45169427 G T SIX3 Missense_Mutation p.A62S 0.62 tolerated_low_confidence(0.85) benign(0.001) TCGA-55-A490-01 2 49195956 49195956 C A FSHR Missense_Mutation p.R245S 0.12 tolerated(0.46) benign(0.03) TCGA-55-A490-01 2 53999056 53999056 G T CHAC2 Missense_Mutation p.V50L 0.32 deleterious(0.03) possibly_damaging(0.536) TCGA-55-A490-01 2 69177348 69177348 C A GKN2 Missense_Mutation p.E38D 0.18 tolerated(0.38) benign(0.298) TCGA-55-A490-01 2 70910752 70910752 C A ADD2 Nonsense_Mutation p.E366* 0.24 TCGA-55-A490-01 2 71828641 71828641 C A DYSF Missense_Mutation p.H1304N 0.51 deleterious(0.01) benign(0.433) TCGA-55-A490-01 2 71828642 71828642 A T DYSF Missense_Mutation p.H1304L 0.52 deleterious(0.05) benign(0.011) TCGA-55-A490-01 2 74041244 74041244 G A C2orf78 Missense_Mutation p.M246I 0.19 tolerated(0.26) benign(0.023) TCGA-55-A490-01 2 74317095 74317095 G T TET3 Missense_Mutation p.S852I 0.41 deleterious(0) probably_damaging(0.994) TCGA-55-A490-01 2 75720357 75720357 G A EVA1A 3'UTR 0.26 TCGA-55-A490-01 2 77746625 77746625 G C LRRTM4 Missense_Mutation p.L124V 0.29 deleterious(0.01) possibly_damaging(0.863) TCGA-55-A490-01 2 80529619 80529619 C T LRRTM1 Silent p.V442V 0.21 TCGA-55-A490-01 2 84670416 84670416 C A SUCLG1 Missense_Mutation p.V104L 0.22 deleterious_low_confidence(0) benign(0.139) TCGA-55-A490-01 2 85628669 85628669 G A CAPG Missense_Mutation p.R112W 0.16 deleterious(0.01) benign(0.446) TCGA-55-A490-01 2 89399369 89399369 G C IGKV1-16 Missense_Mutation p.Q112E 0.17 deleterious(0) benign(0.176) TCGA-55-A490-01 2 89417045 89417045 C A IGKV1-17 Missense_Mutation p.A47S 0.17 deleterious(0.05) possibly_damaging(0.75) TCGA-55-A490-01 2 89442159 89442159 C G IGKV3-20 Missense_Mutation p.R82S 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-55-A490-01 2 89442180 89442180 C A IGKV3-20 Missense_Mutation p.R75S 0.20 tolerated(0.05) probably_damaging(0.949) TCGA-55-A490-01 2 89459495 89459495 C A IGKV6-21 Missense_Mutation p.D28Y 0.22 deleterious(0.01) benign(0.028) TCGA-55-A490-01 2 89544352 89544352 C A IGKV2-30 Missense_Mutation p.G91V 0.15 deleterious(0) probably_damaging(0.985) TCGA-55-A490-01 2 89976320 89976320 G T IGKV2D-30 Missense_Mutation p.R64M 0.22 deleterious(0) possibly_damaging(0.648) TCGA-55-A490-01 2 90044384 90044384 G A IGKV2D-24 Missense_Mutation p.R102K 0.20 tolerated(0.15) benign(0.005) TCGA-55-A490-01 2 9484734 9484734 G - ASAP2 Frame_Shift_Del p.N309Tfs*27 0.31 TCGA-55-A490-01 2 96583768 96583768 G A ANKRD36C Silent p.A756A 0.19 TCGA-55-A490-01 2 97405648 97405648 C T LMAN2L Missense_Mutation p.A44T 0.29 tolerated(0.42) benign(0.144) TCGA-55-A490-01 3 100962669 100962669 G T IMPG2 Missense_Mutation p.Q836K 0.50 tolerated(0.1) probably_damaging(0.978) TCGA-55-A490-01 3 10380004 10380004 G T ATP2B2 Silent p.L1092L 0.23 TCGA-55-A490-01 3 108343371 108343371 G T DZIP3 Missense_Mutation p.E152D 0.48 deleterious(0.03) benign(0.075) TCGA-55-A490-01 3 111312668 111312668 G T ZBED2 Missense_Mutation p.H127Q 0.31 tolerated(0.71) benign(0) TCGA-55-A490-01 3 111312865 111312865 G T ZBED2 Missense_Mutation p.H62N 0.37 deleterious(0.04) possibly_damaging(0.741) TCGA-55-A490-01 3 114069118 114069118 C A ZBTB20 Intron 0.46 TCGA-55-A490-01 3 115560807 115560807 G C LSAMP Missense_Mutation p.S268R 0.28 deleterious(0.01) possibly_damaging(0.491) TCGA-55-A490-01 3 119466063 119466063 G T MAATS1 Missense_Mutation p.E668D 0.26 deleterious(0.01) benign(0.287) TCGA-55-A490-01 3 119531558 119531558 G A NR1I2 Missense_Mutation p.C221Y 0.29 tolerated(1) benign(0.052) TCGA-55-A490-01 3 121350947 121350947 C G HCLS1 Splice_Site p.X442_splice 0.14 TCGA-55-A490-01 3 123046597 123046597 G A ADCY5 Silent p.H605H 0.30 TCGA-55-A490-01 3 124201664 124201664 C G KALRN Missense_Mutation p.Q1399E 0.10 deleterious(0.01) benign(0.032) TCGA-55-A490-01 3 124237463 124237463 G C KALRN 3'UTR 0.42 TCGA-55-A490-01 3 125877392 125877392 T A ALDH1L1 Missense_Mutation p.Y83F 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.587) TCGA-55-A490-01 3 126071103 126071103 C T KLF15 Silent p.L221L 0.15 TCGA-55-A490-01 3 126202312 126202312 C T UROC1 Splice_Site p.X657_splice 0.20 TCGA-55-A490-01 3 126219713 126219713 G T UROC1 Missense_Mutation p.R384S 0.13 tolerated(0.08) probably_damaging(0.974) TCGA-55-A490-01 3 127317250 127317250 A T MCM2 5'UTR 0.28 TCGA-55-A490-01 3 128889925 128889925 T C CNBP Missense_Mutation p.Y140C 0.16 deleterious(0) benign(0.166) TCGA-55-A490-01 3 132319806 132319806 C A ACKR4 Missense_Mutation p.P189T 0.45 deleterious(0.03) possibly_damaging(0.817) TCGA-55-A490-01 3 132319807 132319807 C A ACKR4 Missense_Mutation p.P189H 0.43 deleterious(0) probably_damaging(0.992) TCGA-55-A490-01 3 133368281 133368281 C A TOPBP1 Nonsense_Mutation p.E484* 0.16 TCGA-55-A490-01 3 13543403 13543403 G T HDAC11 Missense_Mutation p.R174S 0.24 tolerated(0.11) benign(0.013) TCGA-55-A490-01 3 135806771 135806771 A G PPP2R3A Silent p.T945T 0.52 TCGA-55-A490-01 3 137881117 137881117 C A DBR1 Missense_Mutation p.D417Y 0.31 deleterious(0) probably_damaging(0.984) TCGA-55-A490-01 3 138291810 138291810 T A CEP70 Intron 0.33 TCGA-55-A490-01 3 138453601 138453601 G A PIK3CB Missense_Mutation p.L283F 0.11 deleterious(0.03) probably_damaging(0.936) TCGA-55-A490-01 3 140401870 140401870 G T TRIM42 Missense_Mutation p.R303L 0.31 tolerated(1) benign(0.009) TCGA-55-A490-01 3 141011428 141011428 A G ACPL2 Missense_Mutation p.Y275C 0.33 deleterious(0) probably_damaging(0.996) TCGA-55-A490-01 3 14199947 14199947 C A XPC Missense_Mutation p.G479V 0.31 tolerated(0.22) benign(0.04) TCGA-55-A490-01 3 142840124 142840124 G T CHST2 Missense_Mutation p.G156C 0.19 deleterious_low_confidence(0.02) unknown(0) TCGA-55-A490-01 3 142840128 142840128 C A CHST2 Missense_Mutation p.T157N 0.21 tolerated(0.29) unknown(0) TCGA-55-A490-01 3 143212599 143212600 - T SLC9A9 Frame_Shift_Ins p.I404Nfs*94 0.38 TCGA-55-A490-01 3 145914463 145914463 C G PLSCR4 Missense_Mutation p.G248R 0.41 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 3 145918826 145918826 C A PLSCR4 Silent p.L131L 0.40 TCGA-55-A490-01 3 147114095 147114095 A T ZIC4 Missense_Mutation p.F128I 0.45 tolerated(0.05) benign(0.001) TCGA-55-A490-01 3 14803060 14803060 G T C3orf20 Missense_Mutation p.Q811H 0.21 deleterious(0) probably_damaging(0.956) TCGA-55-A490-01 3 148930365 148930365 C A CP Missense_Mutation p.W89C 0.33 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 3 148930384 148930384 G C CP Missense_Mutation p.T83S 0.35 tolerated(0.39) benign(0.001) TCGA-55-A490-01 3 150377829 150377829 C G FAM194A Silent p.V614V 0.34 TCGA-55-A490-01 3 154139074 154139074 C A GPR149 Silent p.T459T 0.50 TCGA-55-A490-01 3 154146526 154146526 C A GPR149 Silent p.R293R 0.46 TCGA-55-A490-01 3 155200424 155200424 C - PLCH1 Frame_Shift_Del p.E1139Kfs*38 0.23 TCGA-55-A490-01 3 155861005 155861005 G T KCNAB1 Intron 0.42 TCGA-55-A490-01 3 157823891 157823891 C A SHOX2 5'UTR 0.32 TCGA-55-A490-01 3 158980559 158980559 G C IQCJ Intron 0.15 TCGA-55-A490-01 3 16268966 16268966 C T GALNT15 Nonsense_Mutation p.Q627* 0.14 TCGA-55-A490-01 3 164906975 164906975 C A SLITRK3 Silent p.L548L 0.13 TCGA-55-A490-01 3 167000160 167000160 C G ZBBX Missense_Mutation p.R707T 0.12 deleterious(0.03) benign(0.297) TCGA-55-A490-01 3 170198696 170198696 A T SLC7A14 Missense_Mutation p.C459S 0.44 tolerated(0.82) benign(0.001) TCGA-55-A490-01 3 17052855 17052855 G T PLCL2 Missense_Mutation p.A547S 0.25 tolerated(1) benign(0.006) TCGA-55-A490-01 3 170800136 170800136 G A TNIK Nonsense_Mutation p.R1073* 0.25 TCGA-55-A490-01 3 179447991 179447991 T G USP13 Missense_Mutation p.L368R 0.09 tolerated(0.26) possibly_damaging(0.696) TCGA-55-A490-01 3 182545958 182545958 A C ATP11B Missense_Mutation p.R65S 0.27 deleterious(0) probably_damaging(0.997) TCGA-55-A490-01 3 182759539 182759539 C A MCCC1 Splice_Site p.X362_splice 0.29 TCGA-55-A490-01 3 182988626 182988626 G T B3GNT5 Missense_Mutation p.G347V 0.29 deleterious(0) probably_damaging(0.929) TCGA-55-A490-01 3 183368113 183368113 T C KLHL24 5'UTR 0.11 TCGA-55-A490-01 3 183490251 183490251 G T YEATS2 Silent p.V702V 0.38 TCGA-55-A490-01 3 183772553 183772553 C T HTR3C Missense_Mutation p.H38Y 0.12 tolerated(0.25) benign(0.003) TCGA-55-A490-01 3 183885798 183885798 C T DVL3 Silent p.V481V 0.27 TCGA-55-A490-01 3 184700362 184700362 G C VPS8 Missense_Mutation p.W1143C 0.64 deleterious(0) probably_damaging(1) TCGA-55-A490-01 3 189838137 189838137 G A LEPREL1 Silent p.L128L 0.20 TCGA-55-A490-01 3 190158128 190158128 A G TMEM207 Missense_Mutation p.V70A 0.17 deleterious(0.01) benign(0.114) TCGA-55-A490-01 3 190158129 190158129 C T TMEM207 Missense_Mutation p.V70I 0.17 tolerated(0.09) benign(0.007) TCGA-55-A490-01 3 19190273 19190273 G C KCNH8 Missense_Mutation p.R21P 0.23 deleterious(0) possibly_damaging(0.902) TCGA-55-A490-01 3 192516574 192516574 C T MB21D2 Silent p.L359L 0.16 TCGA-55-A490-01 3 19492665 19492665 G T KCNH8 Missense_Mutation p.D532Y 0.28 deleterious(0.03) probably_damaging(0.989) TCGA-55-A490-01 3 194991420 194991420 C G XXYLT1 Missense_Mutation p.R123P 0.27 tolerated(0.25) benign(0.116) TCGA-55-A490-01 3 196387012 196387012 G A NRROS Silent p.G166G 0.50 TCGA-55-A490-01 3 196387081 196387081 G A NRROS Silent p.Q189Q 0.39 TCGA-55-A490-01 3 197579473 197579473 A T LRCH3 Silent p.L524L 0.30 TCGA-55-A490-01 3 197765466 197765466 G T LMLN Silent p.V669V 0.17 TCGA-55-A490-01 3 24231781 24231781 G T THRB Silent p.R23R 0.37 TCGA-55-A490-01 3 3189249 3189249 C T TRNT1 Silent p.V306V 0.29 TCGA-55-A490-01 3 3221358 3221358 C A CRBN Missense_Mutation p.G5V 0.28 deleterious_low_confidence(0.01) benign(0.309) TCGA-55-A490-01 3 36779824 36779824 G T DCLK3 Silent p.P109P 0.23 TCGA-55-A490-01 3 37458962 37458962 C - C3orf35 Frame_Shift_Del p.L70Wfs*52 0.19 TCGA-55-A490-01 3 38991801 38991801 G T SCN11A Missense_Mutation p.P18H 0.33 tolerated(0.27) benign(0.132) TCGA-55-A490-01 3 391189 391189 G C CHL1 Missense_Mutation p.L332F 0.24 tolerated(0.08) possibly_damaging(0.894) TCGA-55-A490-01 3 42781227 42781227 G A CCDC13 Missense_Mutation p.R355W 0.16 deleterious(0) probably_damaging(1) TCGA-55-A490-01 3 43122519 43122519 C A POMGNT2 Silent p.L135L 0.20 TCGA-55-A490-01 3 44488124 44488124 C A ZNF445 Missense_Mutation p.K1013N 0.28 deleterious(0.01) possibly_damaging(0.728) TCGA-55-A490-01 3 44541304 44541304 G A ZNF852 Missense_Mutation p.T322I 0.30 deleterious(0) probably_damaging(0.941) TCGA-55-A490-01 3 46501187 46501187 T C LTF Missense_Mutation p.I56V 0.20 tolerated(1) benign(0.006) TCGA-55-A490-01 3 47030766 47030766 C G NBEAL2 Missense_Mutation p.P123R 0.19 tolerated(0.22) benign(0.001) TCGA-55-A490-01 3 49680428 49680429 AG T BSN Frame_Shift_Del p.K454Ifs*60 0.11 TCGA-55-A490-01 3 49721438 49721438 G T MST1 3'UTR 0.20 TCGA-55-A490-01 3 51393611 51393611 C T DOCK3 Silent p.R1447R 0.18 TCGA-55-A490-01 3 51664306 51664306 C T RAD54L2 Missense_Mutation p.A167V 0.12 tolerated(0.16) benign(0.118) TCGA-55-A490-01 3 51749255 51749255 C T GRM2 Missense_Mutation p.S489L 0.19 tolerated(0.09) benign(0.002) TCGA-55-A490-01 3 52526147 52526147 C - NISCH Frame_Shift_Del p.H1389Tfs*175 0.13 TCGA-55-A490-01 3 54157491 54157491 G T CACNA2D3 Intron 0.54 TCGA-55-A490-01 3 54919539 54919539 A G CACNA2D3 Missense_Mutation p.H661R 0.31 deleterious(0.01) benign(0.055) TCGA-55-A490-01 3 56627092 56627092 G T CCDC66 Missense_Mutation p.R344L 0.21 deleterious(0) benign(0.13) TCGA-55-A490-01 3 57203270 57203270 C A IL17RD 5'Flank 0.29 TCGA-55-A490-01 3 67053653 67053653 C G KBTBD8 Missense_Mutation p.Q88E 0.16 deleterious(0.01) probably_damaging(0.926) TCGA-55-A490-01 3 73437170 73437170 G C PDZRN3 Silent p.T489T 0.16 TCGA-55-A490-01 3 85961682 85961682 T C CADM2 Missense_Mutation p.L223P 0.23 deleterious(0) probably_damaging(0.997) TCGA-55-A490-01 3 97887929 97887929 C A OR5H15 Missense_Mutation p.P129H 0.16 deleterious(0) probably_damaging(0.98) TCGA-55-A490-01 3 98001860 98001860 T C OR5H2 Silent p.T43T 0.23 TCGA-55-A490-01 4 10023093 10023093 C A SLC2A9 5'UTR 0.14 TCGA-55-A490-01 4 110743627 110743627 G A GAR1 Missense_Mutation p.R185K 0.46 tolerated_low_confidence(0.24) unknown(0) TCGA-55-A490-01 4 11401288 11401288 C G HS3ST1 Missense_Mutation p.Q114H 0.15 deleterious(0) probably_damaging(0.998) TCGA-55-A490-01 4 120986894 120986900 GAGTCCG - MAD2L1 Frame_Shift_Del p.Y49* 0.37 TCGA-55-A490-01 4 121958564 121958564 C A NDNF Missense_Mutation p.G188W 0.42 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 4 122599105 122599105 C A ANXA5 Missense_Mutation p.A159S 0.21 deleterious(0.01) benign(0.37) TCGA-55-A490-01 4 123192605 123192605 G T KIAA1109 Silent p.R2642R 0.24 TCGA-55-A490-01 4 126372395 126372395 C A FAT4 Silent p.I3408I 0.17 TCGA-55-A490-01 4 126373392 126373392 C A FAT4 Missense_Mutation p.L3741M 0.22 probably_damaging(0.983) TCGA-55-A490-01 4 130030867 130030867 A T C4orf33 Intron 0.38 TCGA-55-A490-01 4 134071901 134071901 C A PCDH10 Silent p.T202T 0.25 TCGA-55-A490-01 4 134072758 134072758 C A PCDH10 Missense_Mutation p.T488N 0.24 tolerated(0.13) possibly_damaging(0.511) TCGA-55-A490-01 4 13602988 13602988 C A BOD1L1 Missense_Mutation p.A1846S 0.27 benign(0.025) TCGA-55-A490-01 4 13605472 13605472 C A BOD1L1 Missense_Mutation p.D1018Y 0.11 probably_damaging(0.982) TCGA-55-A490-01 4 13606633 13606633 C G BOD1L1 Missense_Mutation p.A631P 0.33 benign(0.132) TCGA-55-A490-01 4 143130116 143130116 G T INPP4B Silent p.V300V 0.19 TCGA-55-A490-01 4 153332826 153332826 G A FBXW7 Nonsense_Mutation p.Q44* 0.20 TCGA-55-A490-01 4 154625063 154625063 C A TLR2 Missense_Mutation p.T335K 0.31 deleterious(0.02) benign(0.126) TCGA-55-A490-01 4 155491790 155491790 C - FGB Frame_Shift_Del p.P489Hfs*41 0.19 TCGA-55-A490-01 4 164087652 164087652 G A NAF1 Silent p.A76A 0.40 TCGA-55-A490-01 4 167022031 167022031 C T TLL1 3'UTR 0.45 TCGA-55-A490-01 4 183600900 183600900 C T TENM3 Missense_Mutation p.R470W 0.23 deleterious(0) possibly_damaging(0.876) TCGA-55-A490-01 4 186515056 186515056 G A SORBS2 Nonsense_Mutation p.Q1140* 0.23 TCGA-55-A490-01 4 187530381 187530381 C A FAT1 Missense_Mutation p.V3388F 0.57 possibly_damaging(0.519) TCGA-55-A490-01 4 189063457 189063457 C A TRIML1 Missense_Mutation p.H186N 0.38 deleterious(0.01) benign(0.285) TCGA-55-A490-01 4 1961455 1961455 G T WHSC1 Missense_Mutation p.R1081S 0.41 deleterious(0.01) probably_damaging(0.96) TCGA-55-A490-01 4 22390139 22390139 T A GPR125 Missense_Mutation p.D1052V 0.39 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 4 2307103 2307103 C G ZFYVE28 Missense_Mutation p.A322P 0.38 tolerated_low_confidence(0.06) benign(0.282) TCGA-55-A490-01 4 23803479 23803479 G T PPARGC1A Missense_Mutation p.R723S 0.33 deleterious(0) unknown(0) TCGA-55-A490-01 4 2943497 2943497 T C NOP14 Intron 0.46 TCGA-55-A490-01 4 30724070 30724070 G A PCDH7 Silent p.Q342Q 0.17 TCGA-55-A490-01 4 40245368 40245368 G A RHOH Missense_Mutation p.R121Q 0.34 deleterious(0.01) probably_damaging(0.992) TCGA-55-A490-01 4 41664970 41664970 G T LIMCH1 Missense_Mutation p.S702I 0.33 deleterious(0.03) possibly_damaging(0.786) TCGA-55-A490-01 4 43032571 43032571 C A GRXCR1 3'UTR 0.41 TCGA-55-A490-01 4 44449912 44449912 G T KCTD8 Missense_Mutation p.T210K 0.29 deleterious(0) probably_damaging(0.993) TCGA-55-A490-01 4 44450615 44450615 C T KCTD8 5'UTR 0.36 TCGA-55-A490-01 4 4459223 4459223 G C STX18 Missense_Mutation p.H119Q 0.38 tolerated(0.43) benign(0.002) TCGA-55-A490-01 4 46252558 46252558 C A GABRA2 Missense_Mutation p.A375S 0.16 tolerated(0.58) benign(0.309) TCGA-55-A490-01 4 46390667 46390667 C G GABRA2 Silent p.V19V 0.25 TCGA-55-A490-01 4 47163395 47163395 C G GABRB1 Missense_Mutation p.L124V 0.14 tolerated(0.63) benign(0.442) TCGA-55-A490-01 4 47676491 47676491 G T CORIN Missense_Mutation p.Q426K 0.25 tolerated(0.15) benign(0.016) TCGA-55-A490-01 4 52861967 52861967 T A LRRC66 Missense_Mutation p.K407N 0.36 deleterious(0.01) benign(0.051) TCGA-55-A490-01 4 52943114 52943114 T A SPATA18 Missense_Mutation p.Y310N 0.22 deleterious(0) probably_damaging(0.986) TCGA-55-A490-01 4 52961085 52961085 G C SPATA18 3'UTR 0.16 TCGA-55-A490-01 4 55976616 55976616 G T KDR Silent p.P403P 0.25 TCGA-55-A490-01 4 56847392 56847392 G T CEP135 Splice_Site p.X543_splice 0.35 TCGA-55-A490-01 4 57860949 57860949 G T POLR2B Missense_Mutation p.G165C 0.50 tolerated(0.05) possibly_damaging(0.841) TCGA-55-A490-01 4 5868436 5868436 T A CRMP1 Missense_Mutation p.Q143H 0.14 tolerated(0.14) benign(0.001) TCGA-55-A490-01 4 68784890 68784890 C A TMPRSS11A Missense_Mutation p.M254I 0.56 tolerated(0.06) benign(0.004) TCGA-55-A490-01 4 69692184 69692184 G C UGT2B10 Silent p.L352L 0.40 TCGA-55-A490-01 4 69817194 69817194 C T UGT2A3 Silent p.L95L 0.64 TCGA-55-A490-01 4 73941948 73941948 T A ANKRD17 Nonstop_Mutation p.*2604Cext*1 0.47 TCGA-55-A490-01 4 76928570 76928570 G A CXCL9 Silent p.G11G 0.13 TCGA-55-A490-01 4 77290584 77290584 G A CCDC158 Missense_Mutation p.R448W 0.29 tolerated(0.14) possibly_damaging(0.721) TCGA-55-A490-01 4 79507466 79507466 G T ANXA3 Missense_Mutation p.S122I 0.42 deleterious(0.01) probably_damaging(0.962) TCGA-55-A490-01 4 82058598 82058598 A T PRKG2 Missense_Mutation p.M528K 0.53 deleterious(0) probably_damaging(0.97) TCGA-55-A490-01 4 83825978 83825978 C A THAP9 Missense_Mutation p.P57Q 0.17 deleterious(0) probably_damaging(0.99) TCGA-55-A490-01 4 83825979 83825979 A C THAP9 Silent p.P57P 0.17 TCGA-55-A490-01 4 8588917 8588917 G A GPR78 Missense_Mutation p.G307S 0.16 tolerated(0.7) benign(0.007) TCGA-55-A490-01 4 8588947 8588947 C A GPR78 Missense_Mutation p.P317T 0.12 tolerated(1) benign(0.05) TCGA-55-A490-01 4 94159539 94159539 G T GRID2 Missense_Mutation p.L381F 0.32 deleterious(0) probably_damaging(0.996) TCGA-55-A490-01 4 94693307 94693307 G C GRID2 Missense_Mutation p.Q894H 0.18 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-55-A490-01 4 95198209 95198209 C T SMARCAD1 Nonsense_Mutation p.Q661* 0.22 TCGA-55-A490-01 4 9557790 9557790 G A MIR548I2 RNA 0.44 TCGA-55-A490-01 4 9784922 9784922 G T DRD5 Silent p.R423R 0.54 TCGA-55-A490-01 5 100191808 100191808 C T ST8SIA4 Missense_Mutation p.G266S 0.26 benign(0.112) TCGA-55-A490-01 5 100191957 100191957 G T ST8SIA4 Missense_Mutation p.S216Y 0.14 possibly_damaging(0.796) TCGA-55-A490-01 5 1034942 1034942 C T NKD2 Silent p.S166S 0.59 TCGA-55-A490-01 5 110427922 110427922 G T WDR36 5'UTR 0.27 TCGA-55-A490-01 5 115782462 115782462 G T SEMA6A Silent p.A980A 0.22 TCGA-55-A490-01 5 115803368 115803368 C T SEMA6A Missense_Mutation p.G602E 0.22 tolerated(1) benign(0.001) TCGA-55-A490-01 5 118264408 118264408 T C DTWD2 Missense_Mutation p.T141A 0.16 tolerated(1) benign(0.003) TCGA-55-A490-01 5 126746105 126746105 G T MEGF10 Silent p.G314G 0.20 TCGA-55-A490-01 5 127599141 127599141 G - FBN2 Frame_Shift_Del p.P2723Lfs*72 0.20 TCGA-55-A490-01 5 127710429 127710429 G T FBN2 Missense_Mutation p.Q663K 0.16 tolerated(0.13) benign(0.403) TCGA-55-A490-01 5 127712452 127712452 G T FBN2 Silent p.V648V 0.26 TCGA-55-A490-01 5 128994404 128994404 G A ADAMTS19 Missense_Mutation p.G794E 0.28 deleterious(0) probably_damaging(1) TCGA-55-A490-01 5 132552968 132552968 G T FSTL4 Missense_Mutation p.L521M 0.43 deleterious(0.05) benign(0.285) TCGA-55-A490-01 5 137488375 137488375 C A BRD8 Missense_Mutation p.R884S 0.45 deleterious_low_confidence(0.01) benign(0) TCGA-55-A490-01 5 137781247 137781247 C A REEP2 Missense_Mutation p.P217H 0.22 deleterious(0.04) probably_damaging(0.94) TCGA-55-A490-01 5 138223191 138223191 G T CTNNA1 Missense_Mutation p.V386F 0.17 deleterious(0) probably_damaging(0.987) TCGA-55-A490-01 5 138716259 138716259 G A SLC23A1 Missense_Mutation p.R154W 0.15 deleterious(0) probably_damaging(0.981) TCGA-55-A490-01 5 138718929 138718929 T G SLC23A1 Missense_Mutation p.E5A 0.32 tolerated(0.06) benign(0.1) TCGA-55-A490-01 5 139260445 139260445 G A NRG2 Silent p.N329N 0.29 TCGA-55-A490-01 5 140056609 140056609 A T HARS Missense_Mutation p.F306I 0.21 tolerated(0.07) benign(0.246) TCGA-55-A490-01 5 140182210 140182210 G T PCDHA3 Silent p.T476T 0.21 TCGA-55-A490-01 5 140183121 140183121 C A PCDHA3 Missense_Mutation p.P780Q 0.18 tolerated_low_confidence(0.07) benign(0.011) TCGA-55-A490-01 5 140203482 140203482 A T PCDHA5 Missense_Mutation p.S708C 0.23 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-55-A490-01 5 140347312 140347312 G - PCDHAC2 Frame_Shift_Del p.L323Wfs*36 0.35 TCGA-55-A490-01 5 140431764 140431764 G A PCDHB1 Missense_Mutation p.D237N 0.22 deleterious(0) probably_damaging(0.998) TCGA-55-A490-01 5 140562796 140562796 C A PCDHB16 Missense_Mutation p.P221Q 0.45 deleterious_low_confidence(0.01) probably_damaging(0.954) TCGA-55-A490-01 5 140616313 140616313 G T PCDHB18 RNA 0.47 TCGA-55-A490-01 5 140744136 140744136 G C PCDHGA5 Missense_Mutation p.R80P 0.34 deleterious_low_confidence(0) benign(0.293) TCGA-55-A490-01 5 140762546 140762546 G T PCDHGA7 Missense_Mutation p.W27L 0.55 tolerated_low_confidence(0.17) benign(0.025) TCGA-55-A490-01 5 140797658 140797658 G C PCDHGB7 Missense_Mutation p.D78H 0.21 deleterious(0.01) probably_damaging(0.988) TCGA-55-A490-01 5 140798055 140798055 T A PCDHGB7 Nonsense_Mutation p.L210* 0.23 TCGA-55-A490-01 5 140855602 140855602 C G PCDHGC3 5'UTR 0.17 TCGA-55-A490-01 5 140865805 140865805 G C PCDHGC4 Missense_Mutation p.E355D 0.27 tolerated(0.4) benign(0.089) TCGA-55-A490-01 5 141334600 141334600 A T PCDH12 Silent p.S939S 0.26 TCGA-55-A490-01 5 147862727 147862727 C G HTR4 3'UTR 0.30 TCGA-55-A490-01 5 150275333 150275333 C T ZNF300 Missense_Mutation p.E506K 0.15 deleterious(0) probably_damaging(0.969) TCGA-55-A490-01 5 150507762 150507762 C A ANXA6 Missense_Mutation p.K319N 0.65 tolerated(0.43) benign(0.013) TCGA-55-A490-01 5 150509059 150509059 C G ANXA6 Missense_Mutation p.R276P 0.38 deleterious(0) probably_damaging(0.998) TCGA-55-A490-01 5 150515825 150515825 G T ANXA6 Missense_Mutation p.L161M 0.12 tolerated(0.13) probably_damaging(0.997) TCGA-55-A490-01 5 154395564 154395564 G T KIF4B Missense_Mutation p.K715N 0.18 deleterious(0) possibly_damaging(0.511) TCGA-55-A490-01 5 156349189 156349189 G T TIMD4 Silent p.P311P 0.10 TCGA-55-A490-01 5 159344726 159344726 G T ADRA1B Missense_Mutation p.G272C 0.23 deleterious(0.01) probably_damaging(0.951) TCGA-55-A490-01 5 15936915 15936915 G T FBXL7 Missense_Mutation p.V366L 0.19 tolerated(0.13) possibly_damaging(0.793) TCGA-55-A490-01 5 159656631 159656631 G T FABP6 Missense_Mutation p.G72W 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 5 160049431 160049431 C A ATP10B Missense_Mutation p.M594I 0.26 deleterious(0.02) benign(0.213) TCGA-55-A490-01 5 161524722 161524722 C T GABRG2 Nonsense_Mutation p.R136* 0.45 TCGA-55-A490-01 5 164028095 164028095 G T CTC-340A15.2 RNA 0.27 TCGA-55-A490-01 5 167617547 167617547 C A TENM2 Missense_Mutation p.N925K 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-55-A490-01 5 169116265 169116265 C A DOCK2 Nonsense_Mutation p.Y257* 0.22 TCGA-55-A490-01 5 169116266 169116266 C A DOCK2 Missense_Mutation p.L258I 0.22 deleterious(0.05) possibly_damaging(0.566) TCGA-55-A490-01 5 169139180 169139180 G C DOCK2 Missense_Mutation p.D538H 0.13 deleterious(0) probably_damaging(0.985) TCGA-55-A490-01 5 169535573 169535573 C A FOXI1 Missense_Mutation p.N365K 0.18 tolerated(0.15) benign(0.08) TCGA-55-A490-01 5 169694069 169694069 G T LCP2 Missense_Mutation p.P211Q 0.18 deleterious(0.03) possibly_damaging(0.534) TCGA-55-A490-01 5 170610374 170610374 G T RANBP17 Missense_Mutation p.D660Y 0.58 deleterious(0) possibly_damaging(0.892) TCGA-55-A490-01 5 172410837 172410837 G T ATP6V0E1 5'UTR 0.18 TCGA-55-A490-01 5 172659680 172659681 - T NKX2-5 Frame_Shift_Ins p.N289Kfs*107 0.21 TCGA-55-A490-01 5 17275856 17275856 G T BASP1 Silent p.S177S 0.10 TCGA-55-A490-01 5 176002180 176002180 C T CDHR2 Silent p.S197S 0.38 TCGA-55-A490-01 5 179688755 179688755 T A MAPK9 Nonsense_Mutation p.R127* 0.39 TCGA-55-A490-01 5 179763576 179763576 A G GFPT2 Silent p.G39G 0.19 TCGA-55-A490-01 5 23527567 23527567 C A PRDM9 Missense_Mutation p.N790K 0.61 tolerated(0.13) unknown(0) TCGA-55-A490-01 5 26885803 26885803 G T CDH9 Missense_Mutation p.T601N 0.14 tolerated(1) benign(0) TCGA-55-A490-01 5 26915765 26915765 C A CDH9 Missense_Mutation p.A166S 0.60 deleterious(0) possibly_damaging(0.651) TCGA-55-A490-01 5 31294353 31294353 G T CDH6 Missense_Mutation p.M171I 0.22 deleterious(0.02) possibly_damaging(0.84) TCGA-55-A490-01 5 31313457 31313457 G T CDH6 Missense_Mutation p.R429I 0.16 deleterious(0) probably_damaging(0.996) TCGA-55-A490-01 5 31799680 31799680 C G PDZD2 Missense_Mutation p.H109D 0.16 tolerated(0.12) possibly_damaging(0.882) TCGA-55-A490-01 5 32248974 32248974 C A MTMR12 Missense_Mutation p.W267L 0.41 deleterious(0) possibly_damaging(0.834) TCGA-55-A490-01 5 33881251 33881251 C A ADAMTS12 Silent p.T154T 0.23 TCGA-55-A490-01 5 33937065 33937065 G T RXFP3 Missense_Mutation p.A74S 0.11 tolerated(0.19) benign(0.006) TCGA-55-A490-01 5 35957513 35957513 G T UGT3A1 Missense_Mutation p.D284E 0.14 tolerated(1) benign(0.001) TCGA-55-A490-01 5 3599660 3599660 C A IRX1 Missense_Mutation p.Q200K 0.34 deleterious(0.02) benign(0.258) TCGA-55-A490-01 5 39311263 39311263 C A C9 Missense_Mutation p.D363Y 0.35 deleterious(0) probably_damaging(0.996) TCGA-55-A490-01 5 39311441 39311441 C A C9 Silent p.L303L 0.53 TCGA-55-A490-01 5 41313706 41313706 C G PLCXD3 3'UTR 0.49 TCGA-55-A490-01 5 42718660 42718660 G A GHR Missense_Mutation p.D351N 0.18 deleterious(0.01) probably_damaging(0.925) TCGA-55-A490-01 5 42719077 42719077 G T GHR Missense_Mutation p.V490L 0.26 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 5 45262259 45262259 C G HCN1 Missense_Mutation p.A813P 0.08 tolerated_low_confidence(0.14) probably_damaging(0.99) TCGA-55-A490-01 5 59284440 59284440 G A PDE4D Silent p.P49P 0.12 TCGA-55-A490-01 5 63256992 63256992 G A HTR1A Silent p.D185D 0.17 TCGA-55-A490-01 5 6600289 6600289 G C NSUN2 Missense_Mutation p.S685C 0.26 deleterious(0) probably_damaging(0.997) TCGA-55-A490-01 5 6616882 6616882 C T NSUN2 Missense_Mutation p.E327K 0.68 deleterious(0) probably_damaging(0.998) TCGA-55-A490-01 5 71492128 71492128 T A MAP1B Silent p.A982A 0.29 TCGA-55-A490-01 5 71495328 71495328 C G MAP1B Missense_Mutation p.T2049S 0.25 benign(0.064) TCGA-55-A490-01 5 71495809 71495809 C G MAP1B Missense_Mutation p.S2209R 0.13 benign(0.241) TCGA-55-A490-01 5 71756588 71756588 C A ZNF366 Missense_Mutation p.V246L 0.18 deleterious(0.03) benign(0.409) TCGA-55-A490-01 5 72800195 72800195 G C BTF3 Missense_Mutation p.A181P 0.18 tolerated(0.1) benign(0.062) TCGA-55-A490-01 5 75427818 75427818 G T SV2C Silent p.G81G 0.31 TCGA-55-A490-01 5 75967799 75967799 G A IQGAP2 Missense_Mutation p.G1020E 0.22 deleterious(0) probably_damaging(0.995) TCGA-55-A490-01 5 75970390 75970390 G T IQGAP2 Missense_Mutation p.G1128V 0.38 tolerated(0.16) probably_damaging(0.992) TCGA-55-A490-01 5 76355543 76355543 G C AGGF1 Missense_Mutation p.D607H 0.39 deleterious(0) probably_damaging(0.976) TCGA-55-A490-01 5 78384497 78384497 T A BHMT2 3'UTR 0.24 TCGA-55-A490-01 5 78746812 78746812 C A HOMER1 Splice_Site p.X98_splice 0.16 TCGA-55-A490-01 5 79027895 79027895 G T CMYA5 Missense_Mutation p.V1103L 0.50 probably_damaging(0.935) TCGA-55-A490-01 5 79368005 79368005 C A THBS4 Intron 0.22 TCGA-55-A490-01 5 82837154 82837154 C A VCAN Missense_Mutation p.P2778T 0.18 deleterious(0.04) benign(0.266) TCGA-55-A490-01 5 83433174 83433174 T A EDIL3 Splice_Site p.X119_splice 0.41 TCGA-55-A490-01 5 895026 895026 G C TRIP13 Missense_Mutation p.V73L 0.15 deleterious(0.05) benign(0.094) TCGA-55-A490-01 5 93159936 93159936 C A FAM172A Missense_Mutation p.W275L 0.20 deleterious(0) probably_damaging(0.993) TCGA-55-A490-01 5 95234207 95234207 A T ELL2 Missense_Mutation p.I421N 0.21 tolerated(0.16) benign(0.012) TCGA-55-A490-01 5 96103157 96103157 C T CAST Missense_Mutation p.P675S 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-55-A490-01 5 96430447 96430447 C T LIX1 3'UTR 0.26 TCGA-55-A490-01 6 106967625 106967625 C T AIM1 Missense_Mutation p.P440S 0.59 tolerated_low_confidence(0.2) benign(0.02) TCGA-55-A490-01 6 106967628 106967628 C T AIM1 Missense_Mutation p.P441S 0.60 deleterious_low_confidence(0.03) benign(0.211) TCGA-55-A490-01 6 107372260 107372260 G T C6orf203 Splice_Site p.X187_splice 0.62 TCGA-55-A490-01 6 11105234 11105234 G T ERVFRD-1 Missense_Mutation p.R104S 0.30 tolerated(0.5) benign(0.011) TCGA-55-A490-01 6 111694254 111694254 T C REV3L Silent p.E1768E 0.57 TCGA-55-A490-01 6 112420550 112420550 G T FAM229B Nonsense_Mutation p.E22* 0.50 TCGA-55-A490-01 6 112435334 112435334 G T LAMA4 Silent p.P1757P 0.26 TCGA-55-A490-01 6 117240433 117240433 C A RFX6 Missense_Mutation p.Q386K 0.50 deleterious(0) possibly_damaging(0.864) TCGA-55-A490-01 6 121769262 121769262 G T GJA1 3'UTR 0.29 TCGA-55-A490-01 6 129498911 129498911 G T LAMA2 Missense_Mutation p.C456F 0.14 deleterious(0) probably_damaging(1) TCGA-55-A490-01 6 129786364 129786364 C A LAMA2 Silent p.S2410S 0.54 TCGA-55-A490-01 6 131917226 131917226 C A MED23 Silent p.L952L 0.12 TCGA-55-A490-01 6 131926382 131926382 C A MED23 Missense_Mutation p.M537I 0.67 deleterious(0) probably_damaging(0.968) TCGA-55-A490-01 6 132859552 132859552 G T TAAR9 Missense_Mutation p.G42W 0.17 deleterious(0) probably_damaging(0.969) TCGA-55-A490-01 6 133827254 133827254 T C EYA4 Missense_Mutation p.M401T 0.35 tolerated(1) benign(0.001) TCGA-55-A490-01 6 13487030 13487030 C A GFOD1 Silent p.L31L 0.15 TCGA-55-A490-01 6 136597379 136597379 G T BCLAF1 Missense_Mutation p.H428Q 0.17 tolerated(0.36) benign(0.402) TCGA-55-A490-01 6 137019812 137019812 A G MAP3K5 Silent p.T207T 0.62 TCGA-55-A490-01 6 138618075 138618075 G A KIAA1244 Missense_Mutation p.A1211T 0.54 deleterious(0) probably_damaging(0.947) TCGA-55-A490-01 6 142491480 142491480 C T VTA1 Intron 0.21 TCGA-55-A490-01 6 143095719 143095719 C G HIVEP2 Missense_Mutation p.E53Q 0.23 tolerated(0.26) possibly_damaging(0.588) TCGA-55-A490-01 6 146247397 146247397 C G SHPRH Missense_Mutation p.L1079F 0.24 tolerated(0.05) possibly_damaging(0.795) TCGA-55-A490-01 6 146275836 146275836 T A SHPRH Missense_Mutation p.H208L 0.50 tolerated_low_confidence(0.31) benign(0.001) TCGA-55-A490-01 6 150343311 150343313 CCG AT RAET1L Frame_Shift_Del p.A51Dfs*31 0.41 TCGA-55-A490-01 6 152532664 152532664 C A SYNE1 Silent p.G7518G 0.27 TCGA-55-A490-01 6 152847262 152847262 C A SYNE1 Missense_Mutation p.G60C 0.70 probably_damaging(1) TCGA-55-A490-01 6 155578921 155578921 C A TFB1M 3'UTR 0.70 TCGA-55-A490-01 6 155743924 155743924 G T NOX3 Nonsense_Mutation p.C404* 0.14 TCGA-55-A490-01 6 159650933 159650933 G T FNDC1 Missense_Mutation p.D423Y 0.17 deleterious(0) unknown(0) TCGA-55-A490-01 6 160106041 160106041 C T SOD2 Missense_Mutation p.R123H 0.25 deleterious(0.03) benign(0.003) TCGA-55-A490-01 6 160464296 160464296 G A IGF2R Missense_Mutation p.E533K 0.21 tolerated(0.41) benign(0.036) TCGA-55-A490-01 6 160511111 160511111 G T IGF2R Missense_Mutation p.D2211Y 0.19 deleterious(0.01) possibly_damaging(0.905) TCGA-55-A490-01 6 160952813 160952813 G T LPA Missense_Mutation p.A2024D 0.68 deleterious(0) possibly_damaging(0.554) TCGA-55-A490-01 6 161970003 161970003 C A PARK2 Missense_Mutation p.E322D 0.77 deleterious(0) possibly_damaging(0.885) TCGA-55-A490-01 6 163876388 163876388 G T QKI Missense_Mutation p.D74Y 0.23 deleterious(0) possibly_damaging(0.794) TCGA-55-A490-01 6 165843834 165843834 C A PDE10A Splice_Site p.X249_splice 0.40 TCGA-55-A490-01 6 17817339 17817339 C A KIF13A Missense_Mutation p.D638Y 0.31 deleterious(0) possibly_damaging(0.713) TCGA-55-A490-01 6 22569876 22569876 C G HDGFL1 Missense_Mutation p.H24Q 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-55-A490-01 6 24178855 24178855 T A DCDC2 Silent p.P343P 0.21 TCGA-55-A490-01 6 25610289 25610289 G T LRRC16A Missense_Mutation p.D1287Y 0.24 deleterious_low_confidence(0.01) benign(0.252) TCGA-55-A490-01 6 26017291 26017291 T A HIST1H1A 3'UTR 0.38 TCGA-55-A490-01 6 26032250 26032250 G T HIST1H3B Silent p.G13G 0.15 TCGA-55-A490-01 6 26056572 26056572 C T HIST1H1C Missense_Mutation p.G29R 0.10 deleterious(0.01) probably_damaging(0.959) TCGA-55-A490-01 6 26123963 26123963 G A HIST1H2BC Missense_Mutation p.S57F 0.32 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-55-A490-01 6 26157276 26157276 T A HIST1H1E Nonstop_Mutation p.*220Kext*? 0.18 TCGA-55-A490-01 6 26189001 26189001 C A HIST1H4D Missense_Mutation p.G102C 0.21 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-55-A490-01 6 26508825 26508825 C A BTN1A1 Missense_Mutation p.P335H 0.31 deleterious(0) probably_damaging(0.943) TCGA-55-A490-01 6 27839854 27839854 C T HIST1H3I Silent p.K80K 0.17 TCGA-55-A490-01 6 28268892 28268892 G T PGBD1 Nonsense_Mutation p.E421* 0.25 TCGA-55-A490-01 6 28472166 28472166 G T GPX6 Missense_Mutation p.P190H 0.09 deleterious(0) benign(0.208) TCGA-55-A490-01 6 29364987 29364987 C A OR12D2 Missense_Mutation p.R171S 0.13 tolerated(0.68) benign(0.03) TCGA-55-A490-01 6 29394511 29394511 C G OR11A1 Missense_Mutation p.R303P 0.34 deleterious(0.01) possibly_damaging(0.752) TCGA-55-A490-01 6 29394746 29394746 C - OR11A1 Frame_Shift_Del p.A225Qfs*3 0.21 TCGA-55-A490-01 6 29429970 29429970 C G OR2H1 Missense_Mutation p.L142V 0.31 deleterious(0) possibly_damaging(0.734) TCGA-55-A490-01 6 30458997 30458997 G C HLA-E Missense_Mutation p.A232P 0.35 deleterious_low_confidence(0.01) probably_damaging(0.956) TCGA-55-A490-01 6 3113470 3113470 G A RIPK1 Missense_Mutation p.R638K 0.24 tolerated(0.33) benign(0.327) TCGA-55-A490-01 6 3113471 3113471 G T RIPK1 Missense_Mutation p.R638S 0.24 deleterious(0.04) possibly_damaging(0.718) TCGA-55-A490-01 6 31474060 31474060 T C MICB Missense_Mutation p.S156P 0.20 deleterious(0) probably_damaging(0.987) TCGA-55-A490-01 6 31895399 31895399 C A C2 5'UTR 0.39 TCGA-55-A490-01 6 32138966 32138966 T A AGPAT1 Intron 0.36 TCGA-55-A490-01 6 32942466 32942468 TGA - BRD2 In_Frame_Del p.M87del 0.20 TCGA-55-A490-01 6 34003515 34003515 A C GRM4 Missense_Mutation p.M791R 0.31 deleterious(0) possibly_damaging(0.883) TCGA-55-A490-01 6 34004193 34004193 C A GRM4 Missense_Mutation p.R565L 0.16 tolerated(0.37) probably_damaging(0.999) TCGA-55-A490-01 6 34499494 34499494 C T PACSIN1 Silent p.S385S 0.16 TCGA-55-A490-01 6 35478740 35478740 C A TULP1 Nonsense_Mutation p.E133* 0.16 TCGA-55-A490-01 6 35773495 35773495 C A LHFPL5 Silent p.T16T 0.12 TCGA-55-A490-01 6 36981768 36981768 C A FGD2 Missense_Mutation p.Q239K 0.07 deleterious(0) probably_damaging(0.959) TCGA-55-A490-01 6 38862639 38862639 A T DNAH8 Nonsense_Mutation p.R2699* 0.14 TCGA-55-A490-01 6 38905861 38905861 A G DNAH8 Missense_Mutation p.N3675S 0.16 benign(0.391) TCGA-55-A490-01 6 39271739 39271739 C A KCNK17 Missense_Mutation p.V228L 0.06 deleterious(0.01) probably_damaging(0.927) TCGA-55-A490-01 6 39607385 39607385 C T KIF6 Splice_Site p.X133_splice 0.12 TCGA-55-A490-01 6 397111 397111 G C IRF4 Missense_Mutation p.V166L 0.32 tolerated(0.41) benign(0.028) TCGA-55-A490-01 6 41704510 41704510 G T PGC 3'UTR 0.23 TCGA-55-A490-01 6 41903662 41903662 G C CCND3 3'UTR 0.36 TCGA-55-A490-01 6 42162528 42162528 C A GUCA1B Nonsense_Mutation p.E11* 0.38 TCGA-55-A490-01 6 42672217 42672217 G T PRPH2 Missense_Mutation p.H238Q 0.35 tolerated(0.15) benign(0.382) TCGA-55-A490-01 6 43274007 43274007 G A CRIP3 Silent p.L149L 0.35 TCGA-55-A490-01 6 46135825 46135825 C A ENPP5 Missense_Mutation p.V59F 0.22 deleterious(0) probably_damaging(0.989) TCGA-55-A490-01 6 48035982 48035982 G T PTCHD4 Missense_Mutation p.A137D 0.24 tolerated(0.65) possibly_damaging(0.789) TCGA-55-A490-01 6 49427045 49427045 G A MUT Silent p.A45A 0.25 TCGA-55-A490-01 6 49585905 49585905 G C RHAG Missense_Mutation p.A123G 0.21 tolerated(0.34) possibly_damaging(0.773) TCGA-55-A490-01 6 49587020 49587020 G A RHAG Silent p.F71F 0.38 TCGA-55-A490-01 6 51907695 51907695 C A PKHD1 Missense_Mutation p.R1020I 0.26 deleterious(0) probably_damaging(0.962) TCGA-55-A490-01 6 52101672 52101672 G T IL17F 3'UTR 0.22 TCGA-55-A490-01 6 53519729 53519729 A G KLHL31 Silent p.N114N 0.17 TCGA-55-A490-01 6 656766 656766 T A HUS1B Missense_Mutation p.Q60L 0.16 deleterious(0) benign(0.028) TCGA-55-A490-01 6 70871819 70871819 G T COL19A1 Missense_Mutation p.G774C 0.38 deleterious(0) probably_damaging(1) TCGA-55-A490-01 6 70991137 70991137 C A COL9A1 Missense_Mutation p.G278W 0.58 unknown(0) TCGA-55-A490-01 6 7583078 7583078 G T DSP Missense_Mutation p.Q1861H 0.14 possibly_damaging(0.641) TCGA-55-A490-01 6 88331672 88331672 G T ORC3 Missense_Mutation p.V376L 0.50 deleterious(0.02) possibly_damaging(0.868) TCGA-55-A490-01 6 90577104 90577104 G T CASP8AP2 RNA 0.23 TCGA-55-A490-01 7 100087133 100087133 G T NYAP1 Missense_Mutation p.G597W 0.54 deleterious(0.01) probably_damaging(0.989) TCGA-55-A490-01 7 100676539 100676539 T A MUC17 Silent p.A614A 0.17 TCGA-55-A490-01 7 102137380 102137380 G T RASA4B Silent p.R257R 0.29 TCGA-55-A490-01 7 102213018 102213018 C A POLR2J3 5'Flank 0.06 TCGA-55-A490-01 7 102938049 102938049 G T PMPCB Intron 0.12 TCGA-55-A490-01 7 103230244 103230244 C A RELN Missense_Mutation p.S1315I 0.18 tolerated(0.06) benign(0.021) TCGA-55-A490-01 7 106797751 106797751 G T PRKAR2B Missense_Mutation p.G369W 0.15 deleterious(0) probably_damaging(1) TCGA-55-A490-01 7 107824966 107824966 T C NRCAM Missense_Mutation p.K710E 0.13 tolerated(0.14) benign(0.005) TCGA-55-A490-01 7 108524275 108524275 G T C7orf66 Nonsense_Mutation p.S46* 0.21 TCGA-55-A490-01 7 11418900 11418900 G T THSD7A Missense_Mutation p.T1533K 0.17 deleterious(0) benign(0.007) TCGA-55-A490-01 7 116937830 116937830 G T WNT2 Missense_Mutation p.T230K 0.16 deleterious(0) possibly_damaging(0.838) TCGA-55-A490-01 7 117424405 117424405 A G CTTNBP2 Silent p.T724T 0.31 TCGA-55-A490-01 7 121755273 121755273 C A AASS Missense_Mutation p.A300S 0.17 deleterious(0.01) possibly_damaging(0.687) TCGA-55-A490-01 7 121943978 121943978 G A FEZF1 Missense_Mutation p.P172S 0.16 deleterious(0.03) benign(0.021) TCGA-55-A490-01 7 122635737 122635737 C A TAS2R16 5'UTR 0.59 TCGA-55-A490-01 7 122635738 122635738 C A TAS2R16 5'UTR 0.56 TCGA-55-A490-01 7 122809294 122809294 A T SLC13A1 Missense_Mutation p.V154E 0.54 deleterious(0) probably_damaging(0.939) TCGA-55-A490-01 7 124404121 124404121 C T GPR37 Missense_Mutation p.A304T 0.15 deleterious(0) probably_damaging(0.977) TCGA-55-A490-01 7 126883135 126883135 C A GRM8 Missense_Mutation p.V42L 0.48 tolerated(0.53) benign(0) TCGA-55-A490-01 7 127255515 127255515 C T PAX4 Silent p.Q20Q 0.18 TCGA-55-A490-01 7 128497285 128497285 C A FLNC Missense_Mutation p.H2559N 0.15 deleterious(0) possibly_damaging(0.552) TCGA-55-A490-01 7 129951927 129951927 C T CPA4 Missense_Mutation p.T348I 0.11 tolerated(0.06) probably_damaging(0.984) TCGA-55-A490-01 7 131887557 131887557 C A PLXNA4 Missense_Mutation p.G812W 0.11 deleterious(0.01) probably_damaging(1) TCGA-55-A490-01 7 132192697 132192697 G T PLXNA4 Missense_Mutation p.N252K 0.13 tolerated(0.35) possibly_damaging(0.699) TCGA-55-A490-01 7 136848964 136848964 A T hsa-mir-490 Intron 0.40 TCGA-55-A490-01 7 138223465 138223465 A G TRIM24 Missense_Mutation p.K354E 0.24 deleterious(0.01) possibly_damaging(0.546) TCGA-55-A490-01 7 139416618 139416618 C A HIPK2 Silent p.P72P 0.12 TCGA-55-A490-01 7 141365039 141365039 G A KIAA1147 Silent p.Y300Y 0.23 TCGA-55-A490-01 7 141708338 141708338 C A MGAM Missense_Mutation p.P54T 0.40 tolerated(0.32) benign(0) TCGA-55-A490-01 7 141954943 141954943 G T PRSS58 Missense_Mutation p.P123H 0.39 deleterious(0) probably_damaging(1) TCGA-55-A490-01 7 142099570 142099570 C T TRBV7-8 Missense_Mutation p.G78R 0.20 tolerated(0.06) benign(0.208) TCGA-55-A490-01 7 142104244 142104244 G C TRBV6-9 Missense_Mutation p.T74S 0.16 tolerated(0.11) benign(0.194) TCGA-55-A490-01 7 142111616 142111616 C T TRBV5-7 Silent p.L40L 0.44 TCGA-55-A490-01 7 142120009 142120009 C A TRBV7-7 Missense_Mutation p.W53L 0.18 deleterious(0) probably_damaging(1) TCGA-55-A490-01 7 142498901 142498901 C A TRBC2 Missense_Mutation p.P60T 0.19 deleterious_low_confidence(0) possibly_damaging(0.746) TCGA-55-A490-01 7 142498986 142498986 A T TRBC2 Missense_Mutation p.Q88L 0.11 tolerated(0.52) benign(0) TCGA-55-A490-01 7 142561853 142561853 G T EPHB6 Missense_Mutation p.G99W 0.46 deleterious(0) probably_damaging(0.958) TCGA-55-A490-01 7 142570177 142570178 - A TRPV6 Frame_Shift_Ins p.R615Sfs*43 0.31 TCGA-55-A490-01 7 142625230 142625230 C A TRPV5 Nonsense_Mutation p.E288* 0.18 TCGA-55-A490-01 7 142638462 142638462 G T KEL Missense_Mutation p.D692E 0.17 deleterious(0.02) possibly_damaging(0.585) TCGA-55-A490-01 7 143400229 143400229 G T FAM115C Missense_Mutation p.V48L 0.18 deleterious(0) probably_damaging(0.997) TCGA-55-A490-01 7 143400513 143400513 T A FAM115C Missense_Mutation p.F142L 0.21 deleterious(0) possibly_damaging(0.661) TCGA-55-A490-01 7 143453435 143453435 A T CTAGE6 Missense_Mutation p.D439E 0.23 tolerated(0.28) benign(0.105) TCGA-55-A490-01 7 143632887 143632887 G T OR2F2 Missense_Mutation p.A188S 0.12 tolerated(0.14) possibly_damaging(0.71) TCGA-55-A490-01 7 143657159 143657159 G T OR2F1 Missense_Mutation p.L32F 0.37 tolerated(0.06) benign(0.027) TCGA-55-A490-01 7 143771878 143771878 C A OR2A25 Missense_Mutation p.A189E 0.16 deleterious(0) possibly_damaging(0.741) TCGA-55-A490-01 7 148768127 148768128 CT G ZNF786 Frame_Shift_Del p.K579Tfs*26 0.13 TCGA-55-A490-01 7 148947848 148947848 A T ZNF212 Missense_Mutation p.E164V 0.25 deleterious(0) probably_damaging(1) TCGA-55-A490-01 7 150761694 150761694 A T SLC4A2 Missense_Mutation p.Q100L 0.20 tolerated_low_confidence(0.18) benign(0.05) TCGA-55-A490-01 7 150878098 150878098 C A ASB10 Missense_Mutation p.Q344H 0.27 tolerated(1) benign(0.002) TCGA-55-A490-01 7 151874168 151874168 T C KMT2C Silent p.V2790V 0.15 TCGA-55-A490-01 7 156762406 156762406 G T NOM1 3'UTR 0.17 TCGA-55-A490-01 7 158455056 158455056 G A NCAPG2 Silent p.L607L 0.21 TCGA-55-A490-01 7 2302873 2302873 C A SNX8 Missense_Mutation p.A303S 0.22 tolerated(0.19) benign(0.082) TCGA-55-A490-01 7 2645600 2645601 - T IQCE Frame_Shift_Ins p.R613Afs*14 0.39 TCGA-55-A490-01 7 27142175 27142175 G - HOXA2 5'UTR 0.32 TCGA-55-A490-01 7 27224340 27224340 G T HOXA11 Missense_Mutation p.Q142K 0.11 deleterious(0.01) possibly_damaging(0.822) TCGA-55-A490-01 7 28848934 28848934 G C CREB5 Missense_Mutation p.R386P 0.37 deleterious(0) unknown(0) TCGA-55-A490-01 7 35674870 35674870 G A HERPUD2 Silent p.F272F 0.64 TCGA-55-A490-01 7 35734010 35734010 C A HERPUD2 5'UTR 0.18 TCGA-55-A490-01 7 36763642 36763642 C A AOAH Missense_Mutation p.G38W 0.19 deleterious(0) probably_damaging(0.936) TCGA-55-A490-01 7 38389111 38389111 A G TRGV5 Missense_Mutation p.Y67H 0.21 deleterious(0) probably_damaging(0.983) TCGA-55-A490-01 7 4091275 4091275 G T SDK1 Silent p.L908L 0.13 TCGA-55-A490-01 7 4091276 4091276 G T SDK1 Missense_Mutation p.A909S 0.13 deleterious(0.02) possibly_damaging(0.877) TCGA-55-A490-01 7 42004800 42004800 C A GLI3 Missense_Mutation p.G1291C 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.681) TCGA-55-A490-01 7 47407970 47407970 C A TNS3 Missense_Mutation p.G758V 0.48 tolerated(0.24) benign(0.002) TCGA-55-A490-01 7 47854995 47854995 C A PKD1L1 Silent p.L2342L 0.68 TCGA-55-A490-01 7 48556445 48556445 C G ABCA13 Missense_Mutation p.P4589A 0.17 probably_damaging(0.995) TCGA-55-A490-01 7 4899635 4899635 T C PAPOLB Missense_Mutation p.I602V 0.14 tolerated_low_confidence(0.46) benign(0.001) TCGA-55-A490-01 7 57522279 57522279 C A ZNF716 Missense_Mutation p.N51K 0.35 deleterious(0) probably_damaging(0.997) TCGA-55-A490-01 7 6730660 6730660 C A ZNF12 Missense_Mutation p.C638F 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 7 70246739 70246739 G T AUTS2 Missense_Mutation p.A715S 0.22 tolerated(0.28) benign(0.348) TCGA-55-A490-01 7 71036376 71036376 C T WBSCR17 Silent p.L357L 0.10 TCGA-55-A490-01 7 75621770 75621770 G A STYXL1 3'Flank 0.22 TCGA-55-A490-01 7 76109955 76109955 G T DTX2 Missense_Mutation p.E43D 0.18 deleterious(0) probably_damaging(0.998) TCGA-55-A490-01 7 82474649 82474649 C A PCLO Missense_Mutation p.V4662F 0.33 unknown(0) TCGA-55-A490-01 7 82764883 82764883 C T PCLO Silent p.L661L 0.24 TCGA-55-A490-01 7 87178809 87178809 C T ABCB1 Missense_Mutation p.R527K 0.13 tolerated(0.32) benign(0.258) TCGA-55-A490-01 7 88847532 88847532 G T ZNF804B Nonsense_Mutation p.E58* 0.42 TCGA-55-A490-01 7 88964853 88964853 A C ZNF804B Silent p.R853R 0.20 TCGA-55-A490-01 7 89874658 89874658 G - C7orf63 5'UTR 0.19 TCGA-55-A490-01 7 92762683 92762683 C T SAMD9L Missense_Mutation p.A868T 0.23 deleterious(0.02) probably_damaging(0.962) TCGA-55-A490-01 7 92764683 92764683 G A SAMD9L Missense_Mutation p.A201V 0.50 tolerated(0.18) possibly_damaging(0.637) TCGA-55-A490-01 7 92886736 92886736 G T CCDC132 Missense_Mutation p.G128C 0.16 tolerated(0.19) possibly_damaging(0.494) TCGA-55-A490-01 7 93055841 93055841 C A CALCR Missense_Mutation p.G452W 0.17 deleterious(0) probably_damaging(0.922) TCGA-55-A490-01 7 98554156 98554156 A T TRRAP Silent p.A2070A 0.13 TCGA-55-A490-01 7 98562323 98562323 A T TRRAP Missense_Mutation p.M2294L 0.54 benign(0.205) TCGA-55-A490-01 7 99258178 99258178 G T CYP3A5 Missense_Mutation p.H324N 0.24 tolerated(0.5) benign(0.027) TCGA-55-A490-01 8 100836125 100836125 G T VPS13B Missense_Mutation p.K3108N 0.12 deleterious(0.02) benign(0.403) TCGA-55-A490-01 8 10465782 10465782 C A RP1L1 Missense_Mutation p.E1942D 0.40 unknown(0) TCGA-55-A490-01 8 10470549 10470549 A CG RP1L1 Frame_Shift_Ins p.E355Gfs*52 0.23 TCGA-55-A490-01 8 10480499 10480499 G T RP1L1 Silent p.R71R 0.37 TCGA-55-A490-01 8 104831781 104831781 C A RIMS2 Intron 0.39 TCGA-55-A490-01 8 104930676 104930676 C T RIMS2 Missense_Mutation p.P682S 0.23 tolerated_low_confidence(0.15) benign(0.396) TCGA-55-A490-01 8 105441930 105441930 C A DPYS Splice_Site p.X265_splice 0.07 TCGA-55-A490-01 8 106801079 106801079 C G ZFPM2 Silent p.R222R 0.07 TCGA-55-A490-01 8 106814141 106814141 G T ZFPM2 Missense_Mutation p.A611S 0.09 tolerated(0.54) benign(0.021) TCGA-55-A490-01 8 107726141 107726141 A T OXR1 Silent p.I629I 0.10 TCGA-55-A490-01 8 110457348 110457348 C T PKHD1L1 Silent p.Y1750Y 0.14 TCGA-55-A490-01 8 110523110 110523110 G C PKHD1L1 Missense_Mutation p.G3834R 0.14 deleterious(0) probably_damaging(0.986) TCGA-55-A490-01 8 113585860 113585860 A T CSMD3 Silent p.T1304T 0.20 TCGA-55-A490-01 8 113649231 113649231 T G CSMD3 Missense_Mutation p.Y1177S 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 8 113702253 113702253 G T CSMD3 Missense_Mutation p.P667T 0.13 deleterious(0) probably_damaging(1) TCGA-55-A490-01 8 11687789 11687789 G C FDFT1 Missense_Mutation p.A247P 0.34 deleterious(0.05) possibly_damaging(0.694) TCGA-55-A490-01 8 121444298 121444298 C G MRPL13 Missense_Mutation p.E73Q 0.28 tolerated(0.33) probably_damaging(0.983) TCGA-55-A490-01 8 121444300 121444300 C A MRPL13 Missense_Mutation p.W72L 0.27 deleterious(0.01) probably_damaging(0.923) TCGA-55-A490-01 8 124796773 124796773 A G FAM91A1 Missense_Mutation p.Y256C 0.20 deleterious(0) probably_damaging(1) TCGA-55-A490-01 8 125072412 125072412 G C FER1L6 Intron 0.13 TCGA-55-A490-01 8 126056934 126056934 T A KIAA0196 Silent p.T837T 0.16 TCGA-55-A490-01 8 126448527 126448527 C T TRIB1 Silent p.A311A 0.17 TCGA-55-A490-01 8 131861888 131861888 G T ADCY8 Missense_Mutation p.A791E 0.08 tolerated(0.09) benign(0.062) TCGA-55-A490-01 8 131916021 131916021 C G ADCY8 Missense_Mutation p.Q636H 0.57 tolerated(0.17) possibly_damaging(0.796) TCGA-55-A490-01 8 132002784 132002784 A T ADCY8 Missense_Mutation p.V322E 0.14 tolerated(0.06) benign(0.045) TCGA-55-A490-01 8 133141335 133141335 G C KCNQ3 3'UTR 0.13 TCGA-55-A490-01 8 13356906 13356906 C - DLC1 Frame_Shift_Del p.L225Ffs*6 0.25 TCGA-55-A490-01 8 134237702 134237702 C A WISP1 Missense_Mutation p.S227Y 0.30 deleterious(0) probably_damaging(0.985) TCGA-55-A490-01 8 134237800 134237800 G T WISP1 Missense_Mutation p.D260Y 0.13 deleterious(0) possibly_damaging(0.848) TCGA-55-A490-01 8 139164585 139164585 C A FAM135B Silent p.R711R 0.10 TCGA-55-A490-01 8 139164587 139164587 G C FAM135B Missense_Mutation p.R711G 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-55-A490-01 8 139263235 139263235 G T FAM135B Missense_Mutation p.P131T 0.09 deleterious(0.04) benign(0.102) TCGA-55-A490-01 8 139609199 139609199 G T COL22A1 Silent p.S1460S 0.12 TCGA-55-A490-01 8 139616995 139616995 T G COL22A1 Missense_Mutation p.K1374N 0.14 unknown(0) TCGA-55-A490-01 8 139629192 139629192 C A COL22A1 Nonsense_Mutation p.G1279* 0.23 TCGA-55-A490-01 8 139675983 139675983 C A COL22A1 Missense_Mutation p.G1051C 0.11 unknown(0) TCGA-55-A490-01 8 14022112 14022112 C A SGCZ Missense_Mutation p.G175V 0.33 deleterious(0) possibly_damaging(0.616) TCGA-55-A490-01 8 144946590 144946590 G A EPPK1 Missense_Mutation p.R278W 0.12 possibly_damaging(0.794) TCGA-55-A490-01 8 145111862 145111862 C A OPLAH Missense_Mutation p.Q565H 0.68 deleterious(0.01) benign(0.443) TCGA-55-A490-01 8 146032602 146032602 G C ZNF517 Missense_Mutation p.E101Q 0.29 tolerated(0.4) benign(0.01) TCGA-55-A490-01 8 146278072 146278072 G T C8orf33 Missense_Mutation p.R36L 0.69 tolerated_low_confidence(0.73) benign(0.247) TCGA-55-A490-01 8 17813035 17813035 G T PCM1 Missense_Mutation p.G449C 0.56 tolerated(0.07) benign(0.045) TCGA-55-A490-01 8 2092695 2092695 G T MYOM2 Missense_Mutation p.E1396D 0.37 tolerated(0.18) benign(0.008) TCGA-55-A490-01 8 21768189 21768189 C - DOK2 Frame_Shift_Del p.D205Tfs*3 0.32 TCGA-55-A490-01 8 22009455 22009455 G C LGI3 Missense_Mutation p.L185V 0.40 deleterious(0.05) benign(0.022) TCGA-55-A490-01 8 22033772 22033772 G T BMP1 Nonsense_Mutation p.E127* 0.43 TCGA-55-A490-01 8 22145056 22145056 C G PIWIL2 Missense_Mutation p.C253W 0.37 deleterious(0.03) possibly_damaging(0.865) TCGA-55-A490-01 8 31014888 31014888 G C WRN Missense_Mutation p.S1275T 0.16 tolerated(0.43) benign(0.04) TCGA-55-A490-01 8 33454928 33454928 G T DUSP26 Missense_Mutation p.P36T 0.19 deleterious(0.02) benign(0.018) TCGA-55-A490-01 8 36776409 36776409 G T KCNU1 Nonsense_Mutation p.E864* 0.41 TCGA-55-A490-01 8 37686463 37686463 G A GPR124 Silent p.G132G 0.21 TCGA-55-A490-01 8 37698648 37698648 C A GPR124 Missense_Mutation p.P931H 0.20 deleterious(0) probably_damaging(1) TCGA-55-A490-01 8 37791804 37791804 G A GOT1L1 3'UTR 0.50 TCGA-55-A490-01 8 39537683 39537683 A G ADAM18 Missense_Mutation p.M587V 0.56 tolerated(1) benign(0.001) TCGA-55-A490-01 8 51569544 51569544 G T SNTG1 Missense_Mutation p.A309S 0.22 deleterious(0.03) probably_damaging(0.987) TCGA-55-A490-01 8 52287229 52287229 G C PXDNL Missense_Mutation p.P1207R 0.12 deleterious(0) probably_damaging(0.955) TCGA-55-A490-01 8 53124657 53124657 G A ST18 Missense_Mutation p.S23L 0.22 tolerated(0.21) benign(0.218) TCGA-55-A490-01 8 56015226 56015226 G T XKR4 Missense_Mutation p.G60C 0.70 tolerated_low_confidence(0.15) benign(0.015) TCGA-55-A490-01 8 73958248 73958248 G T TERF1 Missense_Mutation p.G399V 0.50 deleterious(0) probably_damaging(1) TCGA-55-A490-01 8 76476401 76476401 G T HNF4G 3'UTR 0.12 TCGA-55-A490-01 8 77775753 77775753 C T ZFHX4 Missense_Mutation p.P3268L 0.27 probably_damaging(0.996) TCGA-55-A490-01 8 89053923 89053923 C A MMP16 Missense_Mutation p.M530I 0.20 deleterious(0) probably_damaging(0.919) TCGA-55-A490-01 8 91657520 91657520 C G TMEM64 Missense_Mutation p.G205A 0.14 deleterious(0.01) possibly_damaging(0.87) TCGA-55-A490-01 8 97256184 97256184 A T MTERFD1 Missense_Mutation p.M341K 0.21 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 8 97345822 97345822 A T PTDSS1 3'UTR 0.16 TCGA-55-A490-01 8 99057586 99057586 C G RPL30 Missense_Mutation p.A4P 0.10 tolerated(0.08) benign(0.439) TCGA-55-A490-01 9 111625143 111625143 G A ACTL7A Missense_Mutation p.E181K 0.33 deleterious(0.02) possibly_damaging(0.765) TCGA-55-A490-01 9 111761455 111761455 C A CTNNAL1 Missense_Mutation p.V75F 0.24 deleterious(0) probably_damaging(1) TCGA-55-A490-01 9 116085309 116085309 C A WDR31 Nonsense_Mutation p.G151* 0.19 TCGA-55-A490-01 9 116276858 116276858 C T RGS3 Missense_Mutation p.P533L 0.19 deleterious(0) possibly_damaging(0.466) TCGA-55-A490-01 9 116357968 116357968 G T RGS3 Missense_Mutation p.V1112F 0.20 deleterious(0) probably_damaging(0.917) TCGA-55-A490-01 9 116857589 116857589 C A KIF12 Missense_Mutation p.D169Y 0.51 deleterious(0) probably_damaging(0.992) TCGA-55-A490-01 9 116858338 116858338 C G KIF12 Silent p.L158L 0.17 TCGA-55-A490-01 9 117087109 117087109 G C ORM1 Missense_Mutation p.R123T 0.18 tolerated(0.09) benign(0.014) TCGA-55-A490-01 9 119097224 119097224 C A PAPPA Missense_Mutation p.A1161E 0.20 deleterious(0) possibly_damaging(0.726) TCGA-55-A490-01 9 119116068 119116068 C A PAPPA Missense_Mutation p.S1448Y 0.17 deleterious(0.02) possibly_damaging(0.86) TCGA-55-A490-01 9 119188239 119188239 C G ASTN2 Missense_Mutation p.R1253P 0.15 deleterious(0.03) unknown(0) TCGA-55-A490-01 9 119626013 119626013 C A ASTN2 Splice_Site p.X579_splice 0.13 TCGA-55-A490-01 9 119858357 119858357 G T ASTN2 Nonsense_Mutation p.Y363* 0.15 TCGA-55-A490-01 9 120466787 120466787 C A TLR4 Missense_Mutation p.P13T 0.35 tolerated(0.37) benign(0.284) TCGA-55-A490-01 9 123170639 123170639 T A CDK5RAP2 Missense_Mutation p.H1571L 0.57 tolerated(0.2) possibly_damaging(0.84) TCGA-55-A490-01 9 124545964 124545964 G T DAB2IP 3'UTR 0.58 TCGA-55-A490-01 9 125424722 125424722 C G OR1L1 Missense_Mutation p.S243C 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-55-A490-01 9 125486955 125486955 C A OR1L4 Silent p.I229I 0.15 TCGA-55-A490-01 9 125673595 125673595 G C ZBTB6 Missense_Mutation p.H253D 0.21 deleterious(0.02) possibly_damaging(0.549) TCGA-55-A490-01 9 125751748 125751748 G C RABGAP1 Missense_Mutation p.A255P 0.20 deleterious(0) probably_damaging(0.998) TCGA-55-A490-01 9 127828266 127828266 T C SCAI Intron 0.50 TCGA-55-A490-01 9 130493068 130493068 C A TTC16 Missense_Mutation p.P669H 0.25 deleterious(0.03) benign(0.159) TCGA-55-A490-01 9 130943036 130943036 C T CIZ1 Missense_Mutation p.E216K 0.24 deleterious(0) possibly_damaging(0.785) TCGA-55-A490-01 9 131036249 131036249 C A GOLGA2 Missense_Mutation p.L29F 0.41 deleterious(0) probably_damaging(1) TCGA-55-A490-01 9 131600383 131600383 C T CCBL1 Missense_Mutation p.E129K 0.29 tolerated(0.11) benign(0.317) TCGA-55-A490-01 9 133945109 133945109 G T LAMC3 Missense_Mutation p.G981C 0.36 deleterious(0.04) probably_damaging(0.993) TCGA-55-A490-01 9 137650096 137650096 G A COL5A1 Missense_Mutation p.R630Q 0.21 probably_damaging(0.984) TCGA-55-A490-01 9 137686946 137686946 G T COL5A1 Nonsense_Mutation p.G907* 0.18 TCGA-55-A490-01 9 137772744 137772744 T C FCN2 Missense_Mutation p.L26P 0.21 tolerated(0.2) benign(0.105) TCGA-55-A490-01 9 139103118 139103118 C A QSOX2 Missense_Mutation p.R514L 0.19 deleterious(0) probably_damaging(0.976) TCGA-55-A490-01 9 139391105 139391105 C A NOTCH1 Missense_Mutation p.M2362I 0.16 tolerated(0.73) benign(0.001) TCGA-55-A490-01 9 139391703 139391703 C A NOTCH1 Missense_Mutation p.S2163I 0.22 tolerated(0.11) benign(0.001) TCGA-55-A490-01 9 139418375 139418375 G T NOTCH1 Missense_Mutation p.T66N 0.56 tolerated(0.65) benign(0.001) TCGA-55-A490-01 9 139802567 139802567 G T TRAF2 Missense_Mutation p.A138S 0.24 tolerated(0.49) benign(0.029) TCGA-55-A490-01 9 139908337 139908337 G - ABCA2 Frame_Shift_Del p.P1465Qfs*9 0.38 TCGA-55-A490-01 9 140130401 140130401 C T SLC34A3 Intron 0.26 TCGA-55-A490-01 9 140356630 140356630 C A PNPLA7 Splice_Site p.X1215_splice 0.51 TCGA-55-A490-01 9 140907688 140907688 G T CACNA1B Splice_Site p.X756_splice 0.46 TCGA-55-A490-01 9 14307370 14307370 C T NFIB Silent p.E60E 0.36 TCGA-55-A490-01 9 18795486 18795486 G T ADAMTSL1 Nonsense_Mutation p.G1257* 0.40 TCGA-55-A490-01 9 19378835 19378835 G T RPS6 Missense_Mutation p.R74S 0.11 deleterious(0.02) possibly_damaging(0.842) TCGA-55-A490-01 9 21305228 21305228 C A IFNA5 Missense_Mutation p.A10S 0.10 deleterious(0.02) possibly_damaging(0.721) TCGA-55-A490-01 9 21305229 21305229 C A IFNA5 Missense_Mutation p.M9I 0.10 tolerated(0.09) benign(0.005) TCGA-55-A490-01 9 21409410 21409410 G T IFNA8 Missense_Mutation p.V79F 0.26 deleterious(0.03) probably_damaging(0.94) TCGA-55-A490-01 9 23692605 23692605 C G ELAVL2 Missense_Mutation p.D344H 0.35 deleterious(0.01) probably_damaging(0.979) TCGA-55-A490-01 9 27949810 27949810 G T LINGO2 Missense_Mutation p.T287N 0.24 tolerated(0.2) benign(0.061) TCGA-55-A490-01 9 3275580 3275580 C A RFX3 Missense_Mutation p.V336F 0.33 deleterious(0.02) benign(0.027) TCGA-55-A490-01 9 37430611 37430611 G A GRHPR Missense_Mutation p.M234I 0.23 deleterious(0) probably_damaging(0.956) TCGA-55-A490-01 9 38016130 38016130 T G SHB Splice_Site p.X240_splice 0.26 TCGA-55-A490-01 9 39887371 39887371 C G SPATA31A2 Missense_Mutation p.P120A 0.43 tolerated(0.15) possibly_damaging(0.728) TCGA-55-A490-01 9 5126757 5126757 G T JAK2 Missense_Mutation p.R1122L 0.29 deleterious(0.04) possibly_damaging(0.493) TCGA-55-A490-01 9 713021 713021 C G KANK1 Nonsense_Mutation p.S752* 0.20 TCGA-55-A490-01 9 72901175 72901175 G C SMC5 Missense_Mutation p.R347S 0.31 tolerated(0.41) benign(0.043) TCGA-55-A490-01 9 79320641 79320641 G T PRUNE2 Silent p.P2183P 0.39 TCGA-55-A490-01 9 84530729 84530729 A T SPATA31D5P RNA 0.14 TCGA-55-A490-01 9 84606716 84606716 C A SPATA31D1 Missense_Mutation p.P444Q 0.43 deleterious(0.04) benign(0.251) TCGA-55-A490-01 9 90502607 90502607 G T SPATA31E1 Missense_Mutation p.A1069S 0.40 tolerated(0.95) benign(0.007) TCGA-55-A490-01 9 90535460 90535460 C A SPATA31C1 RNA 0.44 TCGA-55-A490-01 9 90535498 90535498 C A SPATA31C1 RNA 0.47 TCGA-55-A490-01 9 94877665 94877665 C A SPTLC1 5'Flank 0.16 TCGA-55-A490-01 9 95772596 95772596 G T FGD3 Silent p.R302R 0.36 TCGA-55-A490-01 9 96080695 96080695 G C C9orf129 Silent p.L192L 0.40 TCGA-55-A490-01 9 98248120 98248120 C A PTCH1 Missense_Mutation p.R144L 0.19 deleterious(0.01) possibly_damaging(0.451) TCGA-55-A490-01 9 99126812 99126812 T A SLC35D2 Silent p.I71I 0.20 TCGA-55-A490-01 9 99580861 99580861 C A ZNF782 Nonsense_Mutation p.E482* 0.15 TCGA-55-A490-01 9 99694022 99694022 C A NUTM2G Missense_Mutation p.P12H 0.37 deleterious(0) probably_damaging(0.968) TCGA-55-A490-01 X 100611118 100611118 C G BTK Missense_Mutation p.Q496H 0.71 tolerated(0.12) benign(0.202) TCGA-55-A490-01 X 100611144 100611144 C A BTK Nonsense_Mutation p.E488* 0.72 TCGA-55-A490-01 X 102979156 102979156 T A GLRA4 Missense_Mutation p.D115V 0.21 deleterious(0) possibly_damaging(0.809) TCGA-55-A490-01 X 105011474 105011474 C A IL1RAPL2 Silent p.A627A 0.52 TCGA-55-A490-01 X 105278317 105278317 G C SERPINA7 Missense_Mutation p.A318G 0.57 tolerated(0.11) benign(0.001) TCGA-55-A490-01 X 107976354 107976354 A T IRS4 Missense_Mutation p.L1074Q 0.72 deleterious(0) unknown(0) TCGA-55-A490-01 X 108619373 108619373 G T GUCY2F Missense_Mutation p.F1058L 0.23 deleterious(0) probably_damaging(0.987) TCGA-55-A490-01 X 109310586 109310586 G T TMEM164 Silent p.L134L 0.52 TCGA-55-A490-01 X 110490684 110490684 G C CAPN6 Missense_Mutation p.S552C 0.58 deleterious(0.02) probably_damaging(0.963) TCGA-55-A490-01 X 110928266 110928266 C T ALG13 Silent p.N106N 0.09 TCGA-55-A490-01 X 117959424 117959424 C T ZCCHC12 Missense_Mutation p.P73S 0.42 deleterious(0.05) probably_damaging(0.997) TCGA-55-A490-01 X 125685551 125685551 T A DCAF12L1 Silent p.R347R 0.37 TCGA-55-A490-01 X 129148296 129148296 C A BCORL1 Silent p.S516S 0.31 TCGA-55-A490-01 X 129546493 129546493 C T RBMX2 Nonsense_Mutation p.Q214* 0.62 TCGA-55-A490-01 X 129546548 129546548 C G RBMX2 Missense_Mutation p.S232C 0.70 tolerated(0.19) benign(0.002) TCGA-55-A490-01 X 130217848 130217848 G T ARHGAP36 Missense_Mutation p.V154L 0.41 tolerated(0.64) benign(0.14) TCGA-55-A490-01 X 130218650 130218650 C A ARHGAP36 Missense_Mutation p.R267S 0.67 deleterious(0.04) benign(0.015) TCGA-55-A490-01 X 130419900 130419900 T C IGSF1 Missense_Mutation p.K74E 0.66 tolerated(0.63) benign(0.011) TCGA-55-A490-01 X 134483124 134483124 C G ZNF449 Silent p.L148L 0.29 TCGA-55-A490-01 X 135405269 135405269 C A GPR112 Missense_Mutation p.L135I 0.65 tolerated(0.05) benign(0.289) TCGA-55-A490-01 X 144904647 144904647 C A SLITRK2 Missense_Mutation p.T235N 0.24 tolerated(0.06) benign(0.434) TCGA-55-A490-01 X 14627263 14627263 T G GLRA2 Missense_Mutation p.L289R 0.64 deleterious(0.02) possibly_damaging(0.656) TCGA-55-A490-01 X 150828195 150828195 A T PASD1 Missense_Mutation p.D243V 0.59 deleterious(0.01) possibly_damaging(0.865) TCGA-55-A490-01 X 151093166 151093166 C A MAGEA4 3'UTR 0.73 TCGA-55-A490-01 X 151424464 151424464 T A GABRA3 Missense_Mutation p.T113S 0.58 tolerated(0.09) probably_damaging(0.988) TCGA-55-A490-01 X 151821066 151821066 C A GABRQ Silent p.P407P 0.78 TCGA-55-A490-01 X 152482311 152482311 C T MAGEA1 Missense_Mutation p.E234K 0.72 deleterious(0.01) benign(0.253) TCGA-55-A490-01 X 152827615 152827615 G T ATP2B3 Missense_Mutation p.G1025V 0.56 deleterious(0) probably_damaging(0.998) TCGA-55-A490-01 X 153178174 153178174 C G ARHGAP4 Missense_Mutation p.D548H 0.64 deleterious(0) probably_damaging(0.972) TCGA-55-A490-01 X 153279570 153279570 C A IRAK1 Nonsense_Mutation p.E488* 0.74 TCGA-55-A490-01 X 15349862 15349862 C A PIGA Missense_Mutation p.G64V 0.35 deleterious(0) probably_damaging(1) TCGA-55-A490-01 X 154250896 154250896 C A F8 5'UTR 0.38 TCGA-55-A490-01 X 1742074 1742074 G T ASMT Missense_Mutation p.A38S 0.29 tolerated(0.19) possibly_damaging(0.875) TCGA-55-A490-01 X 24759582 24759582 A G POLA1 Silent p.P763P 0.71 TCGA-55-A490-01 X 26212809 26212809 G C MAGEB6 Silent p.L282L 0.61 TCGA-55-A490-01 X 3228499 3228499 G T MXRA5 Missense_Mutation p.T2582N 0.62 deleterious(0) probably_damaging(0.999) TCGA-55-A490-01 X 3240328 3240328 C T MXRA5 Missense_Mutation p.R1133K 0.72 tolerated(0.93) benign(0.006) TCGA-55-A490-01 X 3241506 3241506 C A MXRA5 Silent p.G740G 0.30 TCGA-55-A490-01 X 34148685 34148685 C G FAM47A Missense_Mutation p.E571Q 0.54 tolerated(0.07) benign(0.058) TCGA-55-A490-01 X 36156527 36156527 T A CHDC2 Missense_Mutation p.N402K 0.42 deleterious(0) probably_damaging(1) TCGA-55-A490-01 X 36162680 36162680 G T CHDC2 Silent p.V421V 0.71 TCGA-55-A490-01 X 37028400 37028400 G T FAM47C Missense_Mutation p.M639I 0.32 tolerated(0.25) benign(0.004) TCGA-55-A490-01 X 37028554 37028554 C A FAM47C Missense_Mutation p.R691S 0.62 tolerated(0.43) benign(0.365) TCGA-55-A490-01 X 37028950 37028950 C A FAM47C Missense_Mutation p.H823N 0.38 deleterious(0.04) possibly_damaging(0.674) TCGA-55-A490-01 X 37526709 37526709 C A LANCL3 Missense_Mutation p.T357K 0.38 deleterious(0) probably_damaging(0.998) TCGA-55-A490-01 X 47038783 47038783 G T RBM10 Nonsense_Mutation p.E264* 0.57 TCGA-55-A490-01 X 49957326 49957326 G T AKAP4 Missense_Mutation p.H680N 0.33 tolerated(0.97) benign(0.001) TCGA-55-A490-01 X 51639804 51639804 G T MAGED1 Missense_Mutation p.Q407H 0.76 deleterious_low_confidence(0) unknown(0) TCGA-55-A490-01 X 53222148 53222148 G A KDM5C 3'UTR 0.62 TCGA-55-A490-01 X 6069376 6069376 C T NLGN4X Silent p.Q44Q 0.31 TCGA-55-A490-01 X 65242641 65242641 G T VSIG4 Intron 0.21 TCGA-55-A490-01 X 68748958 68748958 C A FAM155B Silent p.P328P 0.36 TCGA-55-A490-01 X 73961184 73961184 C A KIAA2022 Nonsense_Mutation p.E1070* 0.56 TCGA-55-A490-01 X 82763472 82763472 C A POU3F4 Missense_Mutation p.P47H 0.27 tolerated(0.13) benign(0.416) TCGA-55-A490-01 X 82763608 82763608 G T POU3F4 Silent p.A92A 0.19 TCGA-55-A490-01 X 91873711 91873711 C G PCDH11X Silent p.A1272A 0.31 TCGA-55-A490-01 X 96139309 96139309 G T RPA4 5'UTR 0.20 TCGA-55-A490-01 X 96200548 96200548 A T DIAPH2 Missense_Mutation p.K489N 0.44 deleterious(0.04) unknown(0) TCGA-55-A491-01 10 117059688 117059688 G C ATRNL1 Missense_Mutation p.A854P 0.40 tolerated(0.27) benign(0.06) TCGA-55-A491-01 10 129903234 129903234 C A MKI67 Missense_Mutation p.L2290F 0.12 deleterious(0.02) possibly_damaging(0.9) TCGA-55-A491-01 10 135126314 135126314 G T ZNF511 Missense_Mutation p.G235C 0.45 deleterious(0) probably_damaging(1) TCGA-55-A491-01 10 14974898 14974898 G A DCLRE1C Silent p.L245L 0.09 TCGA-55-A491-01 10 17875781 17875781 C A MRC1L1 Missense_Mutation p.Q249K 0.15 probably_damaging(0.992) TCGA-55-A491-01 10 22016850 22016850 T G MLLT10 Missense_Mutation p.S686A 0.12 deleterious(0.03) probably_damaging(0.986) TCGA-55-A491-01 10 23290983 23290983 G T ARMC3 Missense_Mutation p.G521W 0.29 deleterious(0) probably_damaging(0.994) TCGA-55-A491-01 10 28225785 28225785 C T ARMC4 Missense_Mutation p.D708N 0.18 deleterious(0.04) possibly_damaging(0.483) TCGA-55-A491-01 10 55569181 55569181 G T PCDH15 Silent p.A477A 0.46 TCGA-55-A491-01 10 55583015 55583015 C A PCDH15 Nonsense_Mutation p.E1493* 0.38 TCGA-55-A491-01 10 60548183 60548183 G T BICC1 Silent p.R200R 0.12 TCGA-55-A491-01 10 70992644 70992644 A T HKDC1 Missense_Mutation p.E117D 0.08 tolerated(0.81) benign(0.003) TCGA-55-A491-01 10 73511587 73511587 C T C10orf54 Missense_Mutation p.E246K 0.21 tolerated(0.07) possibly_damaging(0.664) TCGA-55-A491-01 10 75532748 75532748 C G FUT11 Missense_Mutation p.D219E 0.25 tolerated(0.09) possibly_damaging(0.631) TCGA-55-A491-01 10 81373603 81373603 C A SFTPA1 Missense_Mutation p.R176S 0.29 tolerated(1) benign(0.004) TCGA-55-A491-01 10 89127195 89127195 G C NUTM2D 3'UTR 0.12 TCGA-55-A491-01 10 92502125 92502125 T C HTR7 3'UTR 0.15 TCGA-55-A491-01 10 97141463 97141463 G A SORBS1 Silent p.S544S 0.18 TCGA-55-A491-01 10 99968011 99968011 T C R3HCC1L Missense_Mutation p.V47A 0.12 tolerated(0.09) benign(0.013) TCGA-55-A491-01 11 101833549 101833549 A G KIAA1377 Missense_Mutation p.I595V 0.15 tolerated(0.32) benign(0.027) TCGA-55-A491-01 11 118344255 118344255 C T KMT2A Missense_Mutation p.P794L 0.15 benign(0.323) TCGA-55-A491-01 11 12345533 12345533 G A MICALCL Silent p.K517K 0.18 TCGA-55-A491-01 11 14316390 14316390 T A RRAS2 Missense_Mutation p.Q72L 0.75 deleterious(0) benign(0.361) TCGA-55-A491-01 11 1605902 1605902 G T KRTAP5-1 Missense_Mutation p.S193Y 0.26 deleterious_low_confidence(0.03) unknown(0) TCGA-55-A491-01 11 18955899 18955899 G A MRGPRX1 Silent p.L145L 0.19 TCGA-55-A491-01 11 19077040 19077040 G A MRGPRX2 Silent p.L304L 0.41 TCGA-55-A491-01 11 30557626 30557626 C A MPPED2 Missense_Mutation p.M75I 0.33 tolerated(0.8) benign(0.047) TCGA-55-A491-01 11 33308674 33308674 T G HIPK3 Silent p.G238G 0.07 TCGA-55-A491-01 11 4661108 4661108 C A OR51D1 Missense_Mutation p.P30T 0.23 deleterious(0.01) probably_damaging(1) TCGA-55-A491-01 11 46702065 46702065 C A ARHGAP1 Missense_Mutation p.R264S 0.20 tolerated(0.12) benign(0.086) TCGA-55-A491-01 11 47505002 47505002 T A CELF1 Intron 0.21 TCGA-55-A491-01 11 4825512 4825512 C A OR52R1 Silent p.P33P 0.19 TCGA-55-A491-01 11 49830100 49830100 G T RP11-707M1.1 RNA 0.33 TCGA-55-A491-01 11 55135818 55135818 C G OR4A15 Silent p.A153A 0.24 TCGA-55-A491-01 11 55658938 55658938 C A TRIM51 Missense_Mutation p.L397I 0.17 tolerated(0.06) benign(0.098) TCGA-55-A491-01 11 55659000 55659000 T C TRIM51 Silent p.G417G 0.36 TCGA-55-A491-01 11 55904466 55904466 C T OR8J3 Silent p.S243S 0.20 TCGA-55-A491-01 11 56057837 56057837 C A OR8H1 Missense_Mutation p.Q234H 0.22 tolerated(0.35) benign(0.022) TCGA-55-A491-01 11 58035235 58035235 C - OR10W1 Frame_Shift_Del p.N33Tfs*95 0.19 TCGA-55-A491-01 11 59132047 59132047 C A OR5AN1 Missense_Mutation p.S39Y 0.26 deleterious(0) benign(0.212) TCGA-55-A491-01 11 59480480 59480480 G T OR10V1 Missense_Mutation p.T280K 0.29 deleterious(0) probably_damaging(1) TCGA-55-A491-01 11 60184171 60184171 C A MS4A14 Missense_Mutation p.P610Q 0.22 tolerated(0.5) benign(0.446) TCGA-55-A491-01 11 60233562 60233562 C T MS4A1 Missense_Mutation p.P169S 0.23 tolerated(0.46) benign(0.038) TCGA-55-A491-01 11 61089773 61089773 C A DDB1 Missense_Mutation p.G373W 0.26 deleterious(0) probably_damaging(0.999) TCGA-55-A491-01 11 61188859 61188859 C A CPSF7 Intron 0.21 TCGA-55-A491-01 11 63177324 63177324 C T SLC22A9 Missense_Mutation p.T551M 0.19 deleterious(0) probably_damaging(0.918) TCGA-55-A491-01 11 67049757 67049757 C T ADRBK1 Silent p.L325L 0.13 TCGA-55-A491-01 11 76980934 76980934 A T GDPD4 Missense_Mutation p.L158I 0.19 deleterious(0.05) benign(0.379) TCGA-55-A491-01 11 88911385 88911385 C G TYR Silent p.T88T 0.30 TCGA-55-A491-01 11 89896119 89896119 A T NAALAD2 Missense_Mutation p.K331M 0.23 deleterious(0) possibly_damaging(0.763) TCGA-55-A491-01 11 92564951 92564951 C A FAT3 Silent p.S3215S 0.23 TCGA-55-A491-01 11 92577629 92577629 T A FAT3 Missense_Mutation p.L3699Q 0.15 probably_damaging(0.984) TCGA-55-A491-01 12 10010107 10010107 G A CLEC2B Missense_Mutation p.A68V 0.15 deleterious(0.02) probably_damaging(0.92) TCGA-55-A491-01 12 101018598 101018598 C G GAS2L3 Missense_Mutation p.P672R 0.12 tolerated(0.07) benign(0.261) TCGA-55-A491-01 12 102183814 102183814 A T GNPTAB Silent p.I75I 0.13 TCGA-55-A491-01 12 103699786 103699786 C G C12orf42 Missense_Mutation p.K199N 0.34 tolerated(0.17) benign(0.154) TCGA-55-A491-01 12 110252543 110252543 C A TRPV4 Missense_Mutation p.G20V 0.30 deleterious_low_confidence(0) possibly_damaging(0.466) TCGA-55-A491-01 12 112717030 112717030 A T HECTD4 Splice_Site p.X419_splice 0.08 TCGA-55-A491-01 12 114793430 114793430 G T TBX5 Silent p.L488L 0.13 TCGA-55-A491-01 12 122611894 122611894 G T MLXIP Missense_Mutation p.A169S 0.55 deleterious(0) probably_damaging(0.998) TCGA-55-A491-01 12 122818586 122818586 C G CLIP1 Missense_Mutation p.E900Q 0.12 tolerated(0.1) possibly_damaging(0.876) TCGA-55-A491-01 12 123900307 123900307 C G RILPL2 3'UTR 0.10 TCGA-55-A491-01 12 129559062 129559062 G A TMEM132D Silent p.T886T 0.15 TCGA-55-A491-01 12 131623760 131623760 G A GPR133 Nonsense_Mutation p.W859* 0.18 TCGA-55-A491-01 12 133197926 133197926 G T P2RX2 Nonsense_Mutation p.G331* 0.43 TCGA-55-A491-01 12 29460795 29460795 T A FAR2 Intron 0.21 TCGA-55-A491-01 12 29908641 29908641 C A TMTC1 Splice_Site p.X244_splice 0.28 TCGA-55-A491-01 12 33031881 33031882 - G PKP2 Frame_Shift_Ins p.V104Cfs*3 0.23 TCGA-55-A491-01 12 39994400 39994400 G T ABCD2 Missense_Mutation p.P540H 0.31 deleterious(0.03) benign(0.201) TCGA-55-A491-01 12 40745367 40745367 A G LRRK2 Silent p.E2136E 0.20 TCGA-55-A491-01 12 4383221 4383221 C A CCND2 Nonsense_Mutation p.C5* 0.18 TCGA-55-A491-01 12 50264431 50264431 C A FAIM2 Silent p.L269L 0.33 TCGA-55-A491-01 12 52788642 52788642 T C KRT82 3'UTR 0.43 TCGA-55-A491-01 12 52867021 52867021 G T KRT6C Silent p.I167I 0.22 TCGA-55-A491-01 12 52910598 52910598 C G KRT5 Missense_Mutation p.G421A 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-55-A491-01 12 53876679 53876679 G C MAP3K12 Silent p.L636L 0.16 TCGA-55-A491-01 12 56488258 56488258 G T ERBB3 Missense_Mutation p.V593F 0.38 deleterious(0.04) benign(0.257) TCGA-55-A491-01 12 57857532 57857532 C A GLI1 Silent p.R20R 0.33 TCGA-55-A491-01 12 57881762 57881762 C T MARS 5'UTR 0.43 TCGA-55-A491-01 12 59270241 59270241 T A LRIG3 Missense_Mutation p.Q894L 0.36 tolerated(0.16) benign(0.028) TCGA-55-A491-01 12 63541131 63541131 T A AVPR1A 3'UTR 0.23 TCGA-55-A491-01 12 75444328 75444328 T C KCNC2 Missense_Mutation p.K486R 0.17 tolerated(0.58) probably_damaging(0.998) TCGA-55-A491-01 12 76740950 76740950 C T BBS10 Missense_Mutation p.G272E 0.17 tolerated(0.06) benign(0.2) TCGA-55-A491-01 12 91347364 91347364 G T CCER1 Missense_Mutation p.P386T 0.09 tolerated(0.1) unknown(0) TCGA-55-A491-01 12 91348078 91348078 G T CCER1 Missense_Mutation p.R148S 0.42 deleterious(0.02) possibly_damaging(0.858) TCGA-55-A491-01 12 94772663 94772663 C A CCDC41 Missense_Mutation p.K235N 0.16 deleterious(0) benign(0.093) TCGA-55-A491-01 12 94797017 94797017 C G CCDC41 Missense_Mutation p.E116Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-55-A491-01 12 97313904 97313904 G T NEDD1 Splice_Site p.X170_splice 0.32 TCGA-55-A491-01 13 103249523 103249523 G A TPP2 Silent p.T45T 0.54 TCGA-55-A491-01 13 29041041 29041041 A T FLT1 Missense_Mutation p.S129R 0.33 tolerated(1) benign(0.001) TCGA-55-A491-01 13 50589677 50589677 C G KCNRG Missense_Mutation p.F16L 0.10 tolerated(0.07) benign(0.443) TCGA-55-A491-01 13 76395331 76395331 G T LMO7 Missense_Mutation p.K509N 0.39 tolerated(0.47) benign(0.001) TCGA-55-A491-01 13 79918908 79918908 G C RBM26 Missense_Mutation p.L667V 0.47 tolerated(0.43) possibly_damaging(0.578) TCGA-55-A491-01 14 106780664 106780664 C A IGHV4-28 Missense_Mutation p.W67L 0.37 deleterious(0.01) possibly_damaging(0.534) TCGA-55-A491-01 14 106866556 106866556 C A IGHV3-38 Missense_Mutation p.W66C 0.29 deleterious_low_confidence(0.01) benign(0.3) TCGA-55-A491-01 14 19566019 19566019 C A POTEG Missense_Mutation p.Q355K 0.08 tolerated(0.11) benign(0.297) TCGA-55-A491-01 14 22320953 22320953 A T TRAV8-3 Silent p.S37S 0.40 TCGA-55-A491-01 14 24634092 24634115 CCTGGGCCAGGCCCGCATCTGCTG - IRF9 In_Frame_Del p.G308_P315del 0.13 TCGA-55-A491-01 14 45645168 45645168 A T FANCM Missense_Mutation p.N1071Y 0.30 deleterious(0.02) possibly_damaging(0.59) TCGA-55-A491-01 14 70713529 70713529 T C ADAM21P1 RNA 0.37 TCGA-55-A491-01 14 79454426 79454426 G T NRXN3 Missense_Mutation p.W695C 0.46 deleterious(0) benign(0.002) TCGA-55-A491-01 15 34549906 34549906 T C SLC12A6 Silent p.T209T 0.24 TCGA-55-A491-01 15 67473606 67473606 C T SMAD3 Missense_Mutation p.P229L 0.32 deleterious(0) possibly_damaging(0.694) TCGA-55-A491-01 15 72283504 72283504 A G MYO9A Silent p.I554I 0.09 TCGA-55-A491-01 15 90166902 90166902 C G TICRR Missense_Mutation p.P1121A 0.09 deleterious(0.03) benign(0.127) TCGA-55-A491-01 16 1260950 1260950 T A CACNA1H Missense_Mutation p.L1401Q 0.10 deleterious(0) probably_damaging(1) TCGA-55-A491-01 16 20487070 20487070 G C ACSM2A Missense_Mutation p.R358P 0.15 deleterious(0.03) probably_damaging(0.953) TCGA-55-A491-01 16 20999167 20999167 C A DNAH3 Nonsense_Mutation p.G2244* 0.22 TCGA-55-A491-01 16 24372727 24372727 C A CACNG3 Missense_Mutation p.P164H 0.16 deleterious(0) probably_damaging(1) TCGA-55-A491-01 16 27777674 27777674 G A KIAA0556 Nonsense_Mutation p.W1285* 0.12 TCGA-55-A491-01 16 28915048 28915048 G A ATP2A1 Intron 0.10 TCGA-55-A491-01 16 30521709 30521709 G T ITGAL Nonsense_Mutation p.E846* 0.18 TCGA-55-A491-01 16 3140227 3140227 G A ZSCAN10 Missense_Mutation p.P348L 0.10 deleterious(0) probably_damaging(1) TCGA-55-A491-01 16 46715332 46715332 G A VPS35 Missense_Mutation p.L94F 0.12 deleterious(0.01) probably_damaging(0.923) TCGA-55-A491-01 16 53191318 53191318 G C CHD9 Missense_Mutation p.Q439H 0.17 benign(0.003) TCGA-55-A491-01 16 55519231 55519231 T C MMP2 Missense_Mutation p.F184L 0.38 deleterious(0) possibly_damaging(0.872) TCGA-55-A491-01 16 57095586 57095586 G T NLRC5 Missense_Mutation p.G1376V 0.37 deleterious(0.03) benign(0.028) TCGA-55-A491-01 16 67708890 67708890 G A GFOD2 3'UTR 0.56 TCGA-55-A491-01 16 71317600 71317600 A C CMTR2 Missense_Mutation p.L742V 0.14 deleterious(0.03) benign(0.111) TCGA-55-A491-01 16 72164250 72164250 C T PMFBP1 Silent p.R548R 0.39 TCGA-55-A491-01 16 72845582 72845582 C T ZFHX3 Missense_Mutation p.R1253H 0.48 possibly_damaging(0.813) TCGA-55-A491-01 16 72992659 72992663 CTCCT - ZFHX3 Frame_Shift_Del p.E461Gfs*39 0.22 TCGA-55-A491-01 16 830216 830216 G A MSLNL Missense_Mutation p.P262L 0.29 probably_damaging(0.96) TCGA-55-A491-01 17 10438682 10438682 C A MYH2 Nonsense_Mutation p.E659* 0.38 TCGA-55-A491-01 17 26696373 26696373 G T VTN Silent p.I202I 0.41 TCGA-55-A491-01 17 26961915 26961915 A T KIAA0100 Missense_Mutation p.M897K 0.42 deleterious(0) benign(0.417) TCGA-55-A491-01 17 29159327 29159327 G T ATAD5 5'UTR 0.54 TCGA-55-A491-01 17 33501390 33501390 T C UNC45B Splice_Site p.X655_splice 0.30 TCGA-55-A491-01 17 34432714 34432714 G T CCL4 3'UTR 0.19 TCGA-55-A491-01 17 36484267 36484267 T G GPR179 Missense_Mutation p.N1729H 0.30 deleterious(0.05) possibly_damaging(0.784) TCGA-55-A491-01 17 41063278 41063278 C T G6PC Silent p.L303L 0.16 TCGA-55-A491-01 17 42334739 42334739 C A SLC4A1 Missense_Mutation p.E535D 0.38 deleterious(0) probably_damaging(1) TCGA-55-A491-01 17 42429563 42429563 C T GRN Nonsense_Mutation p.Q454* 0.39 TCGA-55-A491-01 17 46804356 46804356 G A HOXB13 Silent p.R217R 0.32 TCGA-55-A491-01 17 4805203 4805203 G T C17orf107 3'UTR 0.16 TCGA-55-A491-01 17 54921473 54921473 C A DGKE Silent p.I186I 0.22 TCGA-55-A491-01 17 61958816 61958816 C G GH2 Missense_Mutation p.S25T 0.31 deleterious(0.05) possibly_damaging(0.469) TCGA-55-A491-01 17 64731701 64731701 C T PRKCA Missense_Mutation p.T384I 0.24 tolerated(0.09) probably_damaging(0.995) TCGA-55-A491-01 17 64873600 64873600 C A CACNG5 Silent p.I50I 0.22 TCGA-55-A491-01 17 6597461 6597461 G A SLC13A5 Missense_Mutation p.P371S 0.26 deleterious(0) probably_damaging(0.998) TCGA-55-A491-01 17 6597462 6597462 C G SLC13A5 Silent p.V370V 0.30 TCGA-55-A491-01 17 7296963 7296963 A C TMEM256-PLSCR3 Missense_Mutation p.L67W 0.33 tolerated(0.14) probably_damaging(0.957) TCGA-55-A491-01 17 7578271 7578271 T C TP53 Missense_Mutation p.H193R 0.48 deleterious(0) probably_damaging(1) TCGA-55-A491-01 17 77807854 77807854 C G CBX4 Silent p.S529S 0.38 TCGA-55-A491-01 18 13746312 13746318 CTTAAAA - RNMT Frame_Shift_Del p.L412Efs*31 0.14 TCGA-55-A491-01 18 25565501 25565501 G T CDH2 Silent p.R656R 0.26 TCGA-55-A491-01 18 29178620 29178620 C A TTR Silent p.V142V 0.31 TCGA-55-A491-01 18 48325737 48325737 C T MRO Silent p.L253L 0.13 TCGA-55-A491-01 18 59483691 59483691 C A RNF152 Missense_Mutation p.E2D 0.34 tolerated_low_confidence(0.18) benign(0.012) TCGA-55-A491-01 18 61232707 61232707 G T SERPINB12 Silent p.T225T 0.42 TCGA-55-A491-01 18 72997665 72997665 G T TSHZ1 Missense_Mutation p.Q56H 0.25 tolerated(0.06) benign(0.007) TCGA-55-A491-01 18 77894066 77894066 G A ADNP2 Missense_Mutation p.R257K 0.43 tolerated(1) benign(0.002) TCGA-55-A491-01 19 11833011 11833011 A G ZNF823 Silent p.C446C 0.06 TCGA-55-A491-01 19 12989241 12989241 C A DNASE2 Missense_Mutation p.G222W 0.30 deleterious(0) probably_damaging(1) TCGA-55-A491-01 19 14208609 14208609 C T PRKACA Silent p.E171E 0.15 TCGA-55-A491-01 19 14674876 14674876 A G TECR Missense_Mutation p.Y117C 0.24 tolerated(0.14) benign(0.046) TCGA-55-A491-01 19 15582835 15582835 C A PGLYRP2 Silent p.P403P 0.10 TCGA-55-A491-01 19 19115173 19115173 C A SUGP2 Silent p.G911G 0.39 TCGA-55-A491-01 19 19115174 19115174 C A SUGP2 Missense_Mutation p.G911V 0.39 tolerated(0.18) benign(0.296) TCGA-55-A491-01 19 22155316 22155316 T A ZNF208 Missense_Mutation p.K840N 0.15 deleterious(0.01) unknown(0) TCGA-55-A491-01 19 22575597 22575597 G T ZNF98 Missense_Mutation p.T147K 0.12 tolerated(0.07) benign(0.015) TCGA-55-A491-01 19 22784240 22784240 C A AC011467.1 5'Flank 0.27 TCGA-55-A491-01 19 2340935 2340935 G A SPPL2B RNA 0.43 TCGA-55-A491-01 19 31768665 31768665 G A TSHZ3 Silent p.C678C 0.13 TCGA-55-A491-01 19 36046392 36046392 G A ATP4A Missense_Mutation p.R703C 0.13 deleterious(0) probably_damaging(0.93) TCGA-55-A491-01 19 37005326 37005326 C A ZNF260 Missense_Mutation p.G272V 0.10 deleterious(0) probably_damaging(1) TCGA-55-A491-01 19 38055979 38055979 C T ZNF571 Missense_Mutation p.E451K 0.06 deleterious(0.03) probably_damaging(0.933) TCGA-55-A491-01 19 40199934 40199934 G T LGALS14 Missense_Mutation p.R163I 0.64 deleterious(0) possibly_damaging(0.53) TCGA-55-A491-01 19 41186932 41186932 C A NUMBL Missense_Mutation p.V144F 0.59 deleterious(0) possibly_damaging(0.826) TCGA-55-A491-01 19 43372980 43372980 C A PSG1 Nonsense_Mutation p.G306* 0.38 TCGA-55-A491-01 19 44792341 44792341 G C ZNF235 Nonsense_Mutation p.S416* 0.10 TCGA-55-A491-01 19 48184101 48184101 C T GLTSCR1 Silent p.P558P 0.50 TCGA-55-A491-01 19 51226709 51226709 C A CLEC11A 5'UTR 0.39 TCGA-55-A491-01 19 53452968 53452968 C G ZNF816 3'UTR 0.36 TCGA-55-A491-01 19 54313517 54313517 C G NLRP12 Missense_Mutation p.A466P 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-A491-01 19 55815149 55815149 C T BRSK1 Missense_Mutation p.P414L 0.47 deleterious(0) possibly_damaging(0.713) TCGA-55-A491-01 19 57865150 57865150 C A ZNF304 Missense_Mutation p.L31I 0.39 deleterious(0) probably_damaging(0.998) TCGA-55-A491-01 19 6897211 6897211 G T EMR1 Missense_Mutation p.C97F 0.10 deleterious(0.02) benign(0.417) TCGA-55-A491-01 19 6924745 6924745 C A EMR1 Nonsense_Mutation p.C616* 0.35 TCGA-55-A491-01 19 9048390 9048390 C G MUC16 Missense_Mutation p.A11081P 0.13 benign(0.203) TCGA-55-A491-01 19 9069917 9069917 G T MUC16 Silent p.T5843T 0.37 TCGA-55-A491-01 1 101362157 101362157 C T SLC30A7 Silent p.L38L 0.09 TCGA-55-A491-01 1 103455093 103455093 A C COL11A1 Missense_Mutation p.M792R 0.10 unknown(0) TCGA-55-A491-01 1 108700153 108700153 T G SLC25A24 Silent p.A200A 0.48 TCGA-55-A491-01 1 150131728 150131728 G T PLEKHO1 3'UTR 0.45 TCGA-55-A491-01 1 151317291 151317291 T C RFX5 Missense_Mutation p.Y89C 0.35 deleterious(0.01) probably_damaging(0.976) TCGA-55-A491-01 1 156376647 156376647 G T C1orf61 Intron 0.31 TCGA-55-A491-01 1 156909460 156909460 C A ARHGEF11 Nonsense_Mutation p.E1326* 0.39 TCGA-55-A491-01 1 156909461 156909461 C A ARHGEF11 Silent p.L1325L 0.39 TCGA-55-A491-01 1 160105251 160105251 G T ATP1A2 Missense_Mutation p.G715W 0.44 deleterious(0) probably_damaging(1) TCGA-55-A491-01 1 166960650 166960650 G T MAEL Missense_Mutation p.M87I 0.31 tolerated(0.47) benign(0.087) TCGA-55-A491-01 1 173907935 173907935 A G RC3H1 Missense_Mutation p.L1109P 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-A491-01 1 183111976 183111976 G A LAMC1 3'UTR 0.24 TCGA-55-A491-01 1 183885586 183885586 T G RGL1 Silent p.S620S 0.25 TCGA-55-A491-01 1 196205186 196205186 G T KCNT2 Missense_Mutation p.H1076N 0.26 tolerated(0.09) benign(0.009) TCGA-55-A491-01 1 198682199 198682199 C G PTPRC Missense_Mutation p.T430R 0.10 tolerated(0.46) benign(0.222) TCGA-55-A491-01 1 200529853 200529853 G T KIF14 Silent p.V1409V 0.27 TCGA-55-A491-01 1 200960056 200960056 G T KIF21B Silent p.T892T 0.27 TCGA-55-A491-01 1 209879200 209879200 G T HSD11B1 Missense_Mutation p.G45W 0.23 deleterious(0) probably_damaging(1) TCGA-55-A491-01 1 216737649 216737649 G T ESRRG Silent p.P270P 0.20 TCGA-55-A491-01 1 226186992 226186992 C G SDE2 Missense_Mutation p.V8L 0.24 tolerated(0.05) benign(0.283) TCGA-55-A491-01 1 23520786 23520786 C A HTR1D 5'UTR 0.29 TCGA-55-A491-01 1 237870340 237870340 C A RYR2 Silent p.S3224S 0.17 TCGA-55-A491-01 1 240975258 240975258 G T RGS7 Missense_Mutation p.L348I 0.17 tolerated(0.21) probably_damaging(0.991) TCGA-55-A491-01 1 246810553 246810553 C T CNST Silent p.S350S 0.24 TCGA-55-A491-01 1 247151533 247151533 T C ZNF695 Missense_Mutation p.D95G 0.09 tolerated(0.06) benign(0.027) TCGA-55-A491-01 1 248113086 248113086 T G OR2L8 Silent p.S309S 0.08 TCGA-55-A491-01 1 248813267 248813267 T A OR2T27 Missense_Mutation p.R307W 0.10 deleterious(0) benign(0.019) TCGA-55-A491-01 1 31845857 31845857 A G FABP3 Missense_Mutation p.V2A 0.33 tolerated(0.23) benign(0.004) TCGA-55-A491-01 1 33060719 33060719 C - ZBTB8A Frame_Shift_Del p.L297* 0.34 TCGA-55-A491-01 1 36932018 36932018 G T CSF3R Silent p.L844L 0.36 TCGA-55-A491-01 1 39305272 39305272 T A RRAGC Missense_Mutation p.S385C 0.52 deleterious_low_confidence(0.04) benign(0.003) TCGA-55-A491-01 1 42660611 42660611 G A FOXJ3 Missense_Mutation p.S295L 0.39 deleterious(0) probably_damaging(0.996) TCGA-55-A491-01 1 48713210 48713210 G C SLC5A9 Missense_Mutation p.A706P 0.11 deleterious(0) probably_damaging(0.982) TCGA-55-A491-01 1 63789463 63789463 T A FOXD3 Missense_Mutation p.L245Q 0.47 deleterious(0.02) benign(0.43) TCGA-55-A491-01 1 75055477 75055477 C T C1orf173 Missense_Mutation p.G672R 0.10 deleterious(0) benign(0.108) TCGA-55-A491-01 1 86591031 86591031 G T COL24A1 Missense_Mutation p.H330N 0.45 tolerated(0.62) benign(0) TCGA-55-A491-01 20 1616867 1616867 G A SIRPG Missense_Mutation p.R239C 0.22 deleterious(0.04) benign(0.138) TCGA-55-A491-01 20 20051617 20051617 T A C20orf26 Missense_Mutation p.F88Y 0.07 tolerated(0.07) possibly_damaging(0.742) TCGA-55-A491-01 20 2552861 2552861 C T TMC2 Silent p.A197A 0.27 TCGA-55-A491-01 20 35284930 35284930 C T NDRG3 Silent p.A288A 0.18 TCGA-55-A491-01 20 35310973 35310973 C A NDRG3 Missense_Mutation p.S131I 0.07 deleterious(0) possibly_damaging(0.776) TCGA-55-A491-01 20 43615794 43615794 A G STK4 Missense_Mutation p.T128A 0.12 tolerated(0.35) benign(0.022) TCGA-55-A491-01 20 44003803 44003803 G T TP53TG5 Missense_Mutation p.P215H 0.43 deleterious(0) probably_damaging(1) TCGA-55-A491-01 20 44313438 44313438 G A WFDC10B 3'UTR 0.42 TCGA-55-A491-01 20 45875001 45875001 C A ZMYND8 Missense_Mutation p.D679Y 0.46 deleterious_low_confidence(0) possibly_damaging(0.57) TCGA-55-A491-01 20 47630156 47630156 G T ARFGEF2 Missense_Mutation p.W1325L 0.46 deleterious(0) benign(0.254) TCGA-55-A491-01 20 47881281 47881281 G A ZNFX1 Missense_Mutation p.P708L 0.51 deleterious(0) probably_damaging(0.911) TCGA-55-A491-01 20 55211799 55211799 A G TFAP2C Silent p.L352L 0.57 TCGA-55-A491-01 20 57768129 57768129 C A ZNF831 Silent p.S685S 0.40 TCGA-55-A491-01 20 60898908 60898908 C A LAMA5 Missense_Mutation p.A1925S 0.73 benign(0.003) TCGA-55-A491-01 20 61951528 61951528 C A COL20A1 Silent p.G1018G 0.56 TCGA-55-A491-01 20 9365009 9365009 G T PLCB4 Missense_Mutation p.G339W 0.24 deleterious(0) probably_damaging(1) TCGA-55-A491-01 20 9519997 9519997 C T PAK7 3'UTR 0.11 TCGA-55-A491-01 21 31691904 31691904 G A KRTAP26-1 Silent p.S150S 0.26 TCGA-55-A491-01 21 45953699 45953699 C A TSPEAR Silent p.T137T 0.14 TCGA-55-A491-01 21 45994336 45994336 G A KRTAP10-4 Missense_Mutation p.C234Y 0.25 deleterious(0.03) unknown(0) TCGA-55-A491-01 21 46011792 46011792 C T KRTAP10-6 Missense_Mutation p.E192K 0.26 tolerated(0.58) unknown(0) TCGA-55-A491-01 21 47971575 47971575 G A DIP2A Silent p.G956G 0.23 TCGA-55-A491-01 22 18389530 18389530 C G MICAL3 Missense_Mutation p.D17H 0.07 probably_damaging(0.999) TCGA-55-A491-01 22 22730782 22730782 G A IGLV5-45 Missense_Mutation p.A93T 0.23 tolerated(0.73) benign(0.032) TCGA-55-A491-01 22 22842893 22842893 C T ZNF280B Silent p.K277K 0.14 TCGA-55-A491-01 22 22869690 22869690 G T ZNF280A Missense_Mutation p.P89T 0.15 tolerated(0.05) probably_damaging(0.982) TCGA-55-A491-01 22 23243379 23243379 G A IGLC2 Silent p.T75T 0.36 TCGA-55-A491-01 22 29091819 29091819 G C CHEK2 Missense_Mutation p.L423V 0.11 tolerated(0.17) possibly_damaging(0.777) TCGA-55-A491-01 22 32756701 32756701 T A RFPL3 Missense_Mutation p.L279Q 0.16 deleterious(0) probably_damaging(1) TCGA-55-A491-01 22 38484879 38484879 G C BAIAP2L2 Missense_Mutation p.L332V 0.27 tolerated(0.23) benign(0.256) TCGA-55-A491-01 22 42049694 42049694 G T XRCC6 Missense_Mutation p.G431C 0.35 deleterious(0) probably_damaging(1) TCGA-55-A491-01 22 46807546 46807546 G A CELSR1 Silent p.I1574I 0.33 TCGA-55-A491-01 2 102992415 102992415 A T IL18R1 Nonsense_Mutation p.K173* 0.17 TCGA-55-A491-01 2 109085525 109085525 G A GCC2 Missense_Mutation p.M102I 0.40 tolerated(0.56) benign(0.001) TCGA-55-A491-01 2 109383283 109383283 G T RANBP2 Missense_Mutation p.K2096N 0.17 tolerated(0.07) probably_damaging(1) TCGA-55-A491-01 2 113082754 113082754 G - ZC3H6 Frame_Shift_Del p.A690Hfs*28 0.32 TCGA-55-A491-01 2 11733132 11733132 G A GREB1 Missense_Mutation p.A526T 0.17 deleterious(0) benign(0.414) TCGA-55-A491-01 2 120438942 120438942 G T TMEM177 Silent p.L171L 0.17 TCGA-55-A491-01 2 131798981 131798981 G C ARHGEF4 Missense_Mutation p.C428S 0.24 deleterious(0) probably_damaging(1) TCGA-55-A491-01 2 133554257 133554257 A G NCKAP5 Missense_Mutation p.S285P 0.21 tolerated(0.25) probably_damaging(0.982) TCGA-55-A491-01 2 138400103 138400103 A T THSD7B Missense_Mutation p.E1285V 0.18 tolerated(0.06) unknown(0) TCGA-55-A491-01 2 149837994 149837994 C A KIF5C Silent p.V496V 0.47 TCGA-55-A491-01 2 15415844 15415844 C A NBAS Missense_Mutation p.V1830F 0.11 deleterious(0) benign(0.333) TCGA-55-A491-01 2 163236483 163236483 G T KCNH7 Missense_Mutation p.P1004H 0.31 tolerated(0.24) benign(0) TCGA-55-A491-01 2 179399326 179399327 - T TTN Frame_Shift_Ins p.Y34006Ifs*13 0.17 TCGA-55-A491-01 2 179443973 179443973 G T TTN Missense_Mutation p.T22595N 0.23 TCGA-55-A491-01 2 179467123 179467123 C A TTN Missense_Mutation p.V18336L 0.12 TCGA-55-A491-01 2 179986501 179986501 G C SESTD1 Missense_Mutation p.Q480E 0.09 tolerated(1) benign(0.054) TCGA-55-A491-01 2 185802585 185802585 C A ZNF804A Missense_Mutation p.P821H 0.25 tolerated(0.19) benign(0.135) TCGA-55-A491-01 2 202013852 202013852 C G CFLAR Intron 0.15 TCGA-55-A491-01 2 211525206 211525206 C G CPS1 Intron 0.12 TCGA-55-A491-01 2 219562258 219562258 C T STK36 Missense_Mutation p.S945F 0.26 deleterious(0) possibly_damaging(0.568) TCGA-55-A491-01 2 219894182 219894182 G T CCDC108 Missense_Mutation p.F531L 0.27 deleterious(0) probably_damaging(0.953) TCGA-55-A491-01 2 220163805 220163805 C G PTPRN Missense_Mutation p.Q544H 0.22 deleterious(0.01) possibly_damaging(0.811) TCGA-55-A491-01 2 228497855 228497855 A - C2orf83 5'UTR 0.17 TCGA-55-A491-01 2 232790340 232790340 C G NPPC Missense_Mutation p.G59A 0.40 tolerated(0.16) possibly_damaging(0.794) TCGA-55-A491-01 2 26725172 26725172 T G OTOF Missense_Mutation p.K236Q 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-55-A491-01 2 40392003 40392003 A G SLC8A1 Silent p.Y720Y 0.37 TCGA-55-A491-01 2 53955928 53955928 C A ASB3 Missense_Mutation p.Q210H 0.15 tolerated(0.54) possibly_damaging(0.811) TCGA-55-A491-01 2 55522862 55522862 C A CCDC88A Missense_Mutation p.V1807L 0.46 tolerated(0.33) probably_damaging(0.998) TCGA-55-A491-01 2 68358578 68358578 C A WDR92 Splice_Site p.X289_splice 0.39 TCGA-55-A491-01 2 69330012 69330012 C A ANTXR1 Missense_Mutation p.H248N 0.26 tolerated(0.37) probably_damaging(0.935) TCGA-55-A491-01 2 89292187 89292187 G A IGKV1-8 Missense_Mutation p.S29F 0.17 deleterious(0.01) benign(0.231) TCGA-55-A491-01 2 89416982 89416982 G T IGKV1-17 Missense_Mutation p.R68S 0.21 deleterious(0.02) benign(0.005) TCGA-55-A491-01 2 89442321 89442321 T A IGKV3-20 Silent p.P28P 0.37 TCGA-55-A491-01 2 90108563 90108563 C A IGKV6D-41 Missense_Mutation p.L12I 0.29 tolerated(0.09) possibly_damaging(0.476) TCGA-55-A491-01 2 90121984 90121984 C A IGKV1D-17 Missense_Mutation p.H68N 0.14 deleterious(0) benign(0.002) TCGA-55-A491-01 2 90153760 90153760 C T IGKV3D-15 Nonsense_Mutation p.Q6* 0.09 TCGA-55-A491-01 3 101578296 101578296 T A NFKBIZ 3'UTR 0.19 TCGA-55-A491-01 3 111366443 111366443 G T CD96 Missense_Mutation p.A527S 0.29 tolerated(0.17) possibly_damaging(0.516) TCGA-55-A491-01 3 112643939 112643939 C T CD200R1 Missense_Mutation p.G291S 0.34 tolerated(0.26) benign(0.04) TCGA-55-A491-01 3 115395298 115395298 G T GAP43 Nonsense_Mutation p.E193* 0.28 TCGA-55-A491-01 3 119344081 119344081 T A PLA1A Splice_Site p.X374_splice 0.32 TCGA-55-A491-01 3 120876380 120876380 G T STXBP5L Missense_Mutation p.E261D 0.17 tolerated(0.07) probably_damaging(0.998) TCGA-55-A491-01 3 127395387 127395387 C T ABTB1 Silent p.P163P 0.25 TCGA-55-A491-01 3 133376770 133376770 C A TOPBP1 Missense_Mutation p.V79F 0.25 deleterious(0) possibly_damaging(0.64) TCGA-55-A491-01 3 13860646 13860646 G T WNT7A Missense_Mutation p.P282Q 0.26 tolerated(0.55) benign(0.064) TCGA-55-A491-01 3 140866057 140866057 C G SPSB4 Missense_Mutation p.D256E 0.24 tolerated(1) benign(0.002) TCGA-55-A491-01 3 141535635 141535635 C T GRK7 Missense_Mutation p.P469S 0.31 deleterious(0.01) possibly_damaging(0.468) TCGA-55-A491-01 3 142166837 142166837 C A XRN1 5'UTR 0.41 TCGA-55-A491-01 3 15118634 15118634 G A ZFYVE20 Missense_Mutation p.P346S 0.12 tolerated(0.14) benign(0.004) TCGA-55-A491-01 3 167000059 167000059 C A ZBBX Nonsense_Mutation p.E741* 0.15 TCGA-55-A491-01 3 167189440 167189440 C G SERPINI2 Silent p.L61L 0.23 TCGA-55-A491-01 3 169802237 169802237 C T GPR160 Silent p.A159A 0.26 TCGA-55-A491-01 3 179119024 179119024 T A GNB4 Missense_Mutation p.S334C 0.22 tolerated(0.09) probably_damaging(0.915) TCGA-55-A491-01 3 184043481 184043481 A G EIF4G1 Intron 0.32 TCGA-55-A491-01 3 21706505 21706505 C A ZNF385D Missense_Mutation p.S13I 0.35 deleterious(0.01) probably_damaging(0.944) TCGA-55-A491-01 3 27450878 27450878 C A SLC4A7 Missense_Mutation p.G628V 0.21 deleterious(0) probably_damaging(0.994) TCGA-55-A491-01 3 38151018 38151018 G T DLEC1 Silent p.V1075V 0.25 TCGA-55-A491-01 3 38627355 38627355 C T SCN5A Missense_Mutation p.D872N 0.22 tolerated(0.47) benign(0.005) TCGA-55-A491-01 3 52877746 52877746 G C TMEM110 Missense_Mutation p.F203L 0.10 tolerated(0.08) possibly_damaging(0.754) TCGA-55-A491-01 3 96706531 96706531 G A EPHA6 Missense_Mutation p.V270M 0.21 deleterious(0.02) benign(0.297) TCGA-55-A491-01 3 97185283 97185283 A T EPHA6 Intron 0.22 TCGA-55-A491-01 4 114257895 114257895 G A ANK2 Missense_Mutation p.G1252R 0.10 probably_damaging(0.998) TCGA-55-A491-01 4 114257896 114257896 G T ANK2 Missense_Mutation p.G1252V 0.09 probably_damaging(0.995) TCGA-55-A491-01 4 120190866 120190866 C G USP53 Missense_Mutation p.Q437E 0.08 deleterious(0.01) possibly_damaging(0.585) TCGA-55-A491-01 4 122250777 122250777 T A QRFPR Missense_Mutation p.I330F 0.11 tolerated(0.06) benign(0.12) TCGA-55-A491-01 4 122768610 122768610 C A BBS7 Missense_Mutation p.G329V 0.18 deleterious(0.01) benign(0.441) TCGA-55-A491-01 4 122768611 122768611 C A BBS7 Nonsense_Mutation p.G329* 0.19 TCGA-55-A491-01 4 13338349 13338349 C A HSP90AB2P RNA 0.25 TCGA-55-A491-01 4 146770684 146770684 T G ZNF827 Missense_Mutation p.K671Q 0.33 deleterious(0.03) benign(0.28) TCGA-55-A491-01 4 155491743 155491743 T A FGB Missense_Mutation p.S473T 0.19 tolerated(0.06) probably_damaging(0.932) TCGA-55-A491-01 4 160274761 160274761 G T RAPGEF2 Missense_Mutation p.S1244I 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-A491-01 4 160274763 160274763 G T RAPGEF2 Missense_Mutation p.G1245C 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-A491-01 4 169227605 169227605 C A DDX60 Silent p.G177G 0.11 TCGA-55-A491-01 4 183664352 183664352 C A TENM3 Missense_Mutation p.Q1137K 0.24 tolerated(0.07) benign(0.004) TCGA-55-A491-01 4 187455011 187455011 G T MTNR1A Nonsense_Mutation p.Y295* 0.07 TCGA-55-A491-01 4 2321999 2321999 C A ZFYVE28 Splice_Site p.X234_splice 0.25 TCGA-55-A491-01 4 2702199 2702199 G T FAM193A Nonsense_Mutation p.E1143* 0.23 TCGA-55-A491-01 4 30726162 30726162 G C PCDH7 Missense_Mutation p.G1040R 0.15 deleterious(0.01) probably_damaging(0.954) TCGA-55-A491-01 4 56865571 56865571 G T CEP135 Nonsense_Mutation p.E705* 0.19 TCGA-55-A491-01 4 56877595 56877595 G T CEP135 Missense_Mutation p.L841F 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-55-A491-01 4 69327543 69327543 G A TMPRSS11E Missense_Mutation p.D6N 0.22 tolerated(0.48) benign(0.025) TCGA-55-A491-01 4 76489579 76489579 A G C4orf26 Missense_Mutation p.T123A 0.14 tolerated_low_confidence(0.21) benign(0.388) TCGA-55-A491-01 4 82366678 82366678 A C RASGEF1B Splice_Site p.X310_splice 0.06 TCGA-55-A491-01 4 8417514 8417514 G T ACOX3 Silent p.A119A 0.11 TCGA-55-A491-01 4 90816485 90816485 T A MMRN1 Silent p.A121A 0.30 TCGA-55-A491-01 5 126755826 126755826 C T MEGF10 Missense_Mutation p.A506V 0.30 tolerated(0.1) benign(0.193) TCGA-55-A491-01 5 140307165 140307165 G T PCDHAC1 Missense_Mutation p.A230S 0.55 tolerated(0.24) benign(0.189) TCGA-55-A491-01 5 140712460 140712460 G T PCDHGA1 Missense_Mutation p.G737C 0.37 deleterious_low_confidence(0) possibly_damaging(0.554) TCGA-55-A491-01 5 140723658 140723658 C A PCDHGA3 Missense_Mutation p.L20M 0.40 tolerated_low_confidence(0.07) probably_damaging(0.933) TCGA-55-A491-01 5 149212228 149212228 A T PPARGC1B Missense_Mutation p.T198S 0.24 tolerated(0.43) benign(0.004) TCGA-55-A491-01 5 149212296 149212296 C T PPARGC1B Silent p.L220L 0.27 TCGA-55-A491-01 5 149216202 149216202 T C PPARGC1B Silent p.P728P 0.38 TCGA-55-A491-01 5 153029906 153029906 G A GRIA1 Silent p.Q169Q 0.34 TCGA-55-A491-01 5 157166619 157166619 G A THG1L 3'UTR 0.41 TCGA-55-A491-01 5 157216504 157216504 C G CLINT1 Missense_Mutation p.Q484H 0.26 tolerated(0.08) possibly_damaging(0.646) TCGA-55-A491-01 5 161576317 161576317 C A GABRG2 Missense_Mutation p.P416T 0.19 tolerated(0.05) probably_damaging(0.999) TCGA-55-A491-01 5 161576318 161576318 C A GABRG2 Missense_Mutation p.P416H 0.19 deleterious(0.02) probably_damaging(1) TCGA-55-A491-01 5 161580534 161580534 C A GABRG2 3'UTR 0.48 TCGA-55-A491-01 5 167674935 167674935 C G TENM2 Missense_Mutation p.R2331G 0.44 deleterious(0) probably_damaging(0.999) TCGA-55-A491-01 5 168181004 168181004 C T SLIT3 Missense_Mutation p.S565N 0.36 tolerated(0.06) benign(0.067) TCGA-55-A491-01 5 172396576 172396576 G A RPL26L1 3'UTR 0.12 TCGA-55-A491-01 5 17275901 17275901 G A BASP1 Silent p.A192A 0.07 TCGA-55-A491-01 5 176024867 176024867 C A GPRIN1 Missense_Mutation p.V657L 0.33 tolerated(0.45) benign(0.058) TCGA-55-A491-01 5 19591290 19591290 G T CDH18 Missense_Mutation p.A292E 0.50 deleterious(0) probably_damaging(1) TCGA-55-A491-01 5 2747681 2747681 T - IRX2 Frame_Shift_Del p.*472Rfs*43 0.11 TCGA-55-A491-01 5 34850397 34850397 C T TTC23L Silent p.G121G 0.31 TCGA-55-A491-01 5 41149523 41149523 C A C6 Missense_Mutation p.A815S 0.24 tolerated(0.64) benign(0.022) TCGA-55-A491-01 5 55407553 55407553 C T ANKRD55 Missense_Mutation p.R341K 0.34 tolerated_low_confidence(0.1) benign(0.005) TCGA-55-A491-01 5 7832093 7832093 C A C5orf49 Missense_Mutation p.R105L 0.45 deleterious(0) probably_damaging(0.95) TCGA-55-A491-01 6 101847171 101847171 G T GRIK2 Silent p.P6P 0.16 TCGA-55-A491-01 6 105239521 105239521 C A HACE1 Missense_Mutation p.S311I 0.20 deleterious(0) probably_damaging(0.994) TCGA-55-A491-01 6 10796246 10796246 G A MAK Silent p.V376V 0.09 TCGA-55-A491-01 6 123127378 123127378 G C SMPDL3A Missense_Mutation p.G307A 0.18 deleterious(0.01) possibly_damaging(0.905) TCGA-55-A491-01 6 129465094 129465094 C A LAMA2 Missense_Mutation p.P230T 0.15 deleterious(0) probably_damaging(0.924) TCGA-55-A491-01 6 132693762 132693762 C T MOXD1 Silent p.K216K 0.29 TCGA-55-A491-01 6 13365724 13365724 C A GFOD1 Nonsense_Mutation p.E142* 0.20 TCGA-55-A491-01 6 136597629 136597629 G T BCLAF1 Missense_Mutation p.S345Y 0.10 deleterious(0.01) possibly_damaging(0.781) TCGA-55-A491-01 6 151936671 151936671 A C CCDC170 Missense_Mutation p.M602L 0.23 tolerated(0.54) benign(0.002) TCGA-55-A491-01 6 155451540 155451540 A T TIAM2 Missense_Mutation p.R395W 0.40 deleterious(0) probably_damaging(0.986) TCGA-55-A491-01 6 155451543 155451543 A G TIAM2 Missense_Mutation p.K396E 0.40 deleterious(0.01) benign(0.24) TCGA-55-A491-01 6 155572114 155572114 C T TIAM2 Missense_Mutation p.S1340F 0.21 deleterious(0.01) benign(0.115) TCGA-55-A491-01 6 26240937 26240937 G T HIST1H4F Missense_Mutation p.G95V 0.35 deleterious(0) probably_damaging(0.979) TCGA-55-A491-01 6 26370792 26370792 C T BTN3A2 Missense_Mutation p.L226F 0.14 deleterious(0.03) possibly_damaging(0.732) TCGA-55-A491-01 6 29275181 29275181 T A OR14J1 Missense_Mutation p.C239S 0.15 deleterious(0.01) probably_damaging(1) TCGA-55-A491-01 6 29912033 29912033 A C HLA-A Missense_Mutation p.T252P 0.14 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-55-A491-01 6 31597006 31597006 A T PRRC2A Missense_Mutation p.E617D 0.10 benign(0.217) TCGA-55-A491-01 6 43214426 43214426 G A TTBK1 Missense_Mutation p.D10N 0.11 benign(0.445) TCGA-55-A491-01 6 43214429 43214429 G A TTBK1 Missense_Mutation p.E11K 0.15 possibly_damaging(0.736) TCGA-55-A491-01 6 49666169 49666169 G T CRISP2 Missense_Mutation p.S108Y 0.17 deleterious(0) probably_damaging(0.995) TCGA-55-A491-01 6 54735264 54735264 A T FAM83B Missense_Mutation p.S74C 0.20 tolerated(0.07) benign(0.033) TCGA-55-A491-01 6 55216281 55216281 T A GFRAL Missense_Mutation p.S201T 0.21 tolerated(0.09) possibly_damaging(0.781) TCGA-55-A491-01 6 96651361 96651361 C A FUT9 Missense_Mutation p.H110Q 0.27 deleterious(0) probably_damaging(0.98) TCGA-55-A491-01 7 100304795 100304795 G C POP7 Missense_Mutation p.E114D 0.37 tolerated(0.6) benign(0.004) TCGA-55-A491-01 7 104782521 104782521 C A SRPK2 Nonsense_Mutation p.E493* 0.14 TCGA-55-A491-01 7 121741465 121741465 G A AASS Missense_Mutation p.P456S 0.18 deleterious(0.03) benign(0.001) TCGA-55-A491-01 7 128477593 128477593 T A FLNC Missense_Mutation p.Y281N 0.08 deleterious(0) probably_damaging(0.998) TCGA-55-A491-01 7 138264217 138264217 A G TRIM24 Missense_Mutation p.E842G 0.29 deleterious(0.01) possibly_damaging(0.741) TCGA-55-A491-01 7 141955096 141955096 G T PRSS58 Missense_Mutation p.A72E 0.36 tolerated(0.11) benign(0.334) TCGA-55-A491-01 7 149463229 149463229 G C ZNF467 Missense_Mutation p.P121R 0.14 tolerated(0.3) benign(0.319) TCGA-55-A491-01 7 19035653 19035653 G C HDAC9 Missense_Mutation p.G1060R 0.36 tolerated(0.14) probably_damaging(0.998) TCGA-55-A491-01 7 20778631 20778631 G T ABCB5 Missense_Mutation p.A965S 0.30 deleterious(0.04) possibly_damaging(0.787) TCGA-55-A491-01 7 21805141 21805141 T A DNAH11 Missense_Mutation p.H3019Q 0.36 possibly_damaging(0.721) TCGA-55-A491-01 7 27141033 27141033 G T HOXA2 Missense_Mutation p.T148N 0.29 tolerated(0.07) probably_damaging(0.914) TCGA-55-A491-01 7 42004169 42004169 C A GLI3 Missense_Mutation p.G1501V 0.21 deleterious(0.03) possibly_damaging(0.642) TCGA-55-A491-01 7 47906074 47906074 C A PKD1L1 Missense_Mutation p.W1345C 0.12 deleterious(0) probably_damaging(0.975) TCGA-55-A491-01 7 4823044 4823044 C T AP5Z1 Missense_Mutation p.P155L 0.21 deleterious(0) probably_damaging(0.994) TCGA-55-A491-01 7 53104065 53104065 G T POM121L12 Missense_Mutation p.G234V 0.40 deleterious(0) probably_damaging(0.988) TCGA-55-A491-01 7 73795168 73795168 G T CLIP2 Silent p.T818T 0.27 TCGA-55-A491-01 7 97875320 97875320 C A TECPR1 Missense_Mutation p.G47C 0.21 deleterious(0) probably_damaging(0.992) TCGA-55-A491-01 7 99506243 99506243 C A TRIM4 Missense_Mutation p.G254W 0.26 deleterious(0) possibly_damaging(0.787) TCGA-55-A491-01 7 99661464 99661464 G C ZSCAN21 Missense_Mutation p.E216Q 0.12 tolerated(0.23) benign(0.218) TCGA-55-A491-01 8 109796982 109796982 T G TMEM74 Missense_Mutation p.K116Q 0.37 tolerated(0.1) benign(0.049) TCGA-55-A491-01 8 113246665 113246665 A T CSMD3 Missense_Mutation p.Y3557N 0.30 deleterious(0) benign(0.191) TCGA-55-A491-01 8 113249566 113249566 C A CSMD3 Missense_Mutation p.V3494L 0.34 deleterious(0) benign(0.023) TCGA-55-A491-01 8 113349847 113349847 A T CSMD3 Missense_Mutation p.L2256I 0.22 deleterious(0.01) probably_damaging(0.988) TCGA-55-A491-01 8 113599308 113599308 C T CSMD3 Missense_Mutation p.G1291E 0.07 deleterious(0.03) possibly_damaging(0.898) TCGA-55-A491-01 8 134072425 134072425 G A SLA Missense_Mutation p.A34V 0.19 tolerated_low_confidence(0.66) benign(0.006) TCGA-55-A491-01 8 139163581 139163581 G A FAM135B Missense_Mutation p.S1046F 0.27 deleterious(0.01) benign(0.179) TCGA-55-A491-01 8 1497411 1497411 C T DLGAP2 Silent p.D184D 0.30 TCGA-55-A491-01 8 18490289 18490289 G T PSD3 Silent p.P748P 0.21 TCGA-55-A491-01 8 67900726 67900726 C G PPP1R42 Missense_Mutation p.L193F 0.10 deleterious(0.05) benign(0.16) TCGA-55-A491-01 8 73480144 73480144 A T KCNB2 Missense_Mutation p.T59S 0.32 tolerated(0.15) possibly_damaging(0.888) TCGA-55-A491-01 8 75928908 75928908 G C CRISPLD1 Missense_Mutation p.S279T 0.42 tolerated(0.6) benign(0.001) TCGA-55-A491-01 8 88886192 88886192 C A DCAF4L2 Missense_Mutation p.S3I 0.29 tolerated(0.13) benign(0.125) TCGA-55-A491-01 8 96281313 96281313 G A C8orf37 Silent p.G35G 0.27 TCGA-55-A491-01 9 100090317 100090317 C A CCDC180 Missense_Mutation p.H603Q 0.13 deleterious(0) probably_damaging(0.968) TCGA-55-A491-01 9 102861099 102861099 G A ERP44 Silent p.S8S 0.35 TCGA-55-A491-01 9 104125104 104125104 T C BAAT Missense_Mutation p.N288S 0.11 tolerated(0.53) benign(0.005) TCGA-55-A491-01 9 108467944 108467944 G T TMEM38B Missense_Mutation p.G60V 0.26 deleterious(0) probably_damaging(1) TCGA-55-A491-01 9 115060193 115060193 C A PTBP3 Nonsense_Mutation p.G22* 0.22 TCGA-55-A491-01 9 115567195 115567195 A G SNX30 Missense_Mutation p.K99R 0.19 deleterious(0.01) probably_damaging(0.926) TCGA-55-A491-01 9 116130561 116130561 T C BSPRY Silent p.L194L 0.23 TCGA-55-A491-01 9 119097277 119097277 C A PAPPA Missense_Mutation p.R1179S 0.19 deleterious(0) benign(0.353) TCGA-55-A491-01 9 136272043 136272043 G A REXO4 3'UTR 0.13 TCGA-55-A491-01 9 140672428 140672428 G C EHMT1 Missense_Mutation p.G705R 0.30 tolerated(0.35) benign(0.24) TCGA-55-A491-01 9 140672429 140672429 G T EHMT1 Missense_Mutation p.G705V 0.31 tolerated(0.53) benign(0.001) TCGA-55-A491-01 9 35741743 35741743 C T GBA2 Missense_Mutation p.V238I 0.10 tolerated(0.08) possibly_damaging(0.733) TCGA-55-A491-01 9 69238282 69238282 T C CBWD6 Missense_Mutation p.K204E 0.05 deleterious(0) probably_damaging(0.988) TCGA-55-A491-01 9 732487 732487 G C KANK1 Missense_Mutation p.E1039Q 0.43 tolerated(0.18) benign(0.025) TCGA-55-A491-01 9 78973884 78973884 C A PCSK5 3'UTR 0.12 TCGA-55-A491-01 9 99408297 99408297 G A AAED1 Missense_Mutation p.P144L 0.30 deleterious(0.03) probably_damaging(0.959) TCGA-55-A491-01 9 99798888 99798888 C G CTSV Missense_Mutation p.G180R 0.10 deleterious(0.02) probably_damaging(1) TCGA-55-A491-01 X 10093088 10093088 C A WWC3 Silent p.L617L 0.23 TCGA-55-A491-01 X 10093089 10093089 C A WWC3 Missense_Mutation p.L618I 0.23 tolerated(0.25) benign(0.412) TCGA-55-A491-01 X 119664098 119664098 T A CUL4B Missense_Mutation p.Q835H 0.28 tolerated(0.05) benign(0.02) TCGA-55-A491-01 X 125686024 125686024 G T DCAF12L1 Missense_Mutation p.R190S 0.31 tolerated(0.32) possibly_damaging(0.728) TCGA-55-A491-01 X 127185520 127185520 G C ACTRT1 Missense_Mutation p.I222M 0.19 deleterious(0) benign(0.377) TCGA-55-A491-01 X 127185831 127185831 G T ACTRT1 Silent p.R119R 0.22 TCGA-55-A491-01 X 12735646 12735646 C A FRMPD4 Missense_Mutation p.P901T 0.33 deleterious(0) probably_damaging(1) TCGA-55-A491-01 X 130419027 130419027 G T IGSF1 Intron 0.21 TCGA-55-A491-01 X 131762522 131762522 T C HS6ST2 Missense_Mutation p.E556G 0.09 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-55-A491-01 X 144904399 144904399 G T SLITRK2 Silent p.G152G 0.43 TCGA-55-A491-01 X 144906011 144906011 C A SLITRK2 Missense_Mutation p.P690T 0.13 tolerated(1) possibly_damaging(0.889) TCGA-55-A491-01 X 149013938 149013938 G T MAGEA8 Missense_Mutation p.A298S 0.45 tolerated(0.07) benign(0.042) TCGA-55-A491-01 X 152845813 152845813 C G ATP2B3 3'UTR 0.38 TCGA-55-A491-01 X 153699892 153699892 G T PLXNA3 Missense_Mutation p.V1811L 0.45 deleterious(0.03) benign(0.19) TCGA-55-A491-01 X 154293891 154293891 T C MTCP1 Intron 0.19 TCGA-55-A491-01 X 1585176 1585176 C A P2RY8 Silent p.G92G 0.19 TCGA-55-A491-01 X 19973541 19973541 T A CXorf23 Missense_Mutation p.Q473L 0.26 deleterious(0) probably_damaging(0.997) TCGA-55-A491-01 X 2407797 2407797 A C ZBED1 Missense_Mutation p.F322V 0.12 deleterious(0) benign(0.068) TCGA-55-A491-01 X 29935703 29935703 A C IL1RAPL1 Missense_Mutation p.S301R 0.15 deleterious(0.01) possibly_damaging(0.81) TCGA-55-A491-01 X 30260721 30260721 C G MAGEB4 Missense_Mutation p.R157G 0.34 tolerated(0.12) possibly_damaging(0.462) TCGA-55-A491-01 X 3242157 3242157 C A MXRA5 Silent p.A523A 0.23 TCGA-55-A491-01 X 37027680 37027680 G T FAM47C Silent p.V399V 0.35 TCGA-55-A491-01 X 37545270 37545270 C A XK Missense_Mutation p.T19K 0.25 tolerated(0.05) benign(0.175) TCGA-55-A491-01 X 46466492 46466492 C T SLC9A7 Silent p.T691T 0.18 TCGA-55-A491-01 X 47041372 47041372 C A RBM10 Nonsense_Mutation p.Y572* 0.25 TCGA-55-A491-01 X 47306961 47306961 C T ZNF41 Missense_Mutation p.M736I 0.28 tolerated(0.3) benign(0.044) TCGA-55-A491-01 X 48543997 48543997 C A WAS Missense_Mutation p.P112H 0.30 deleterious(0) probably_damaging(0.962) TCGA-55-A491-01 X 50085246 50085246 C T CCNB3 Silent p.L1188L 0.28 TCGA-55-A491-01 X 50378222 50378222 T A SHROOM4 Missense_Mutation p.Q284L 0.33 deleterious(0.01) benign(0.159) TCGA-55-A491-01 X 53225191 53225191 C T KDM5C Silent p.A1009A 0.23 TCGA-55-A491-01 X 53455231 53455231 G C RIBC1 Missense_Mutation p.G67A 0.21 tolerated(0.26) benign(0.075) TCGA-55-A491-01 X 54160418 54160418 A G FAM120C Missense_Mutation p.S560P 0.12 tolerated(0.16) benign(0.006) TCGA-55-A491-01 X 54949550 54949550 C T TRO Silent p.A195A 0.31 TCGA-55-A491-01 X 55650851 55650851 G T FOXR2 Missense_Mutation p.W236L 0.32 deleterious(0) probably_damaging(1) TCGA-55-A491-01 X 56591547 56591547 C G UBQLN2 Missense_Mutation p.P414R 0.28 deleterious(0) probably_damaging(1) TCGA-55-A491-01 X 57146618 57146618 C A SPIN2B Missense_Mutation p.G149W 0.34 deleterious(0) probably_damaging(1) TCGA-55-A491-01 X 5821878 5821878 C A NLGN4X Missense_Mutation p.G281C 0.33 deleterious(0) probably_damaging(1) TCGA-55-A491-01 X 6069322 6069322 T A NLGN4X Missense_Mutation p.L62F 0.23 deleterious(0.05) probably_damaging(0.994) TCGA-55-A491-01 X 62917186 62917186 T A ARHGEF9 Splice_Site p.X128_splice 0.24 TCGA-55-A491-01 X 62944520 62944520 C A ARHGEF9 Missense_Mutation p.L27F 0.25 deleterious(0) probably_damaging(1) TCGA-55-A491-01 X 64738296 64738296 G C LAS1L Missense_Mutation p.L500V 0.27 deleterious(0) probably_damaging(0.996) TCGA-55-A491-01 X 79286329 79286329 G C TBX22 Missense_Mutation p.D428H 0.17 deleterious(0.05) benign(0.069) TCGA-55-A491-01 X 79698639 79698639 G T FAM46D Missense_Mutation p.V201F 0.28 deleterious(0) possibly_damaging(0.601) TCGA-55-A491-01 X 91132539 91132539 A T PCDH11X Missense_Mutation p.I434F 0.28 tolerated(0.17) benign(0.163) TCGA-55-A491-01 X 9900402 9900402 C A SHROOM2 Missense_Mutation p.P1027T 0.19 tolerated(0.15) benign(0.032) TCGA-55-A492-01 10 102222955 102222955 C G WNT8B Missense_Mutation p.I10M 0.11 tolerated(0.22) benign(0.005) TCGA-55-A492-01 10 107022230 107022230 G T SORCS3 Missense_Mutation p.E1195D 0.20 tolerated(0.3) benign(0.018) TCGA-55-A492-01 10 129537211 129537211 G T FOXI2 Silent p.R313R 0.19 TCGA-55-A492-01 10 134016153 134016153 G T DPYSL4 Missense_Mutation p.V429L 0.27 tolerated(0.13) benign(0.041) TCGA-55-A492-01 10 23257283 23257283 C A ARMC3 Missense_Mutation p.L261I 0.39 deleterious(0.04) benign(0.115) TCGA-55-A492-01 10 28224177 28224177 G T ARMC4 Silent p.R753R 0.27 TCGA-55-A492-01 10 43871642 43871642 T C FXYD4 3'UTR 0.20 TCGA-55-A492-01 10 64136463 64136463 G T ZNF365 Missense_Mutation p.A171S 0.38 tolerated_low_confidence(0.06) probably_damaging(0.93) TCGA-55-A492-01 10 68979606 68979606 C A CTNNA3 Missense_Mutation p.R201I 0.35 tolerated(0.06) possibly_damaging(0.639) TCGA-55-A492-01 10 69902781 69902781 G A MYPN Silent p.A329A 0.30 TCGA-55-A492-01 11 116691894 116691894 C T APOA4 Missense_Mutation p.G294R 0.28 tolerated(0.27) benign(0.042) TCGA-55-A492-01 11 118948971 118948971 A T VPS11 Missense_Mutation p.D616V 0.16 tolerated(0.26) benign(0.108) TCGA-55-A492-01 11 119215603 119215603 C A MFRP Missense_Mutation p.Q251H 0.33 tolerated(0.22) probably_damaging(0.987) TCGA-55-A492-01 11 130275454 130275454 C T ADAMTS8 Silent p.%3D 0.12 TCGA-55-A492-01 11 130319254 130319254 A G ADAMTS15 Missense_Mutation p.Y129C 0.15 deleterious(0.03) probably_damaging(0.981) TCGA-55-A492-01 11 130343151 130343151 G T ADAMTS15 Missense_Mutation p.G763V 0.29 tolerated(0.29) benign(0.032) TCGA-55-A492-01 11 130785482 130785482 T A SNX19 Missense_Mutation p.Y118F 0.31 tolerated(0.08) probably_damaging(0.999) TCGA-55-A492-01 11 193082 193082 G T SCGB1C1 5'UTR 0.20 TCGA-55-A492-01 11 49208318 49208318 C A FOLH1 Missense_Mutation p.D173Y 0.24 deleterious(0) probably_damaging(0.987) TCGA-55-A492-01 11 55861528 55861528 A G OR8I2 Missense_Mutation p.I249V 0.10 tolerated(0.23) benign(0.005) TCGA-55-A492-01 11 59560962 59560962 A T STX3 Missense_Mutation p.D217V 0.10 deleterious(0) probably_damaging(1) TCGA-55-A492-01 11 6024102 6024102 C T OR56A4 Missense_Mutation p.A93T 0.31 deleterious(0.05) probably_damaging(0.992) TCGA-55-A492-01 11 61081103 61081103 G A DDB1 Missense_Mutation p.T646I 0.25 tolerated(0.05) benign(0.078) TCGA-55-A492-01 11 64756699 64756699 C A BATF2 Missense_Mutation p.A243S 0.26 tolerated(0.09) benign(0.046) TCGA-55-A492-01 11 67219816 67219816 A G GPR152 Missense_Mutation p.L127P 0.41 deleterious(0.02) probably_damaging(0.989) TCGA-55-A492-01 11 71276880 71276880 G T KRTAP5-10 Missense_Mutation p.G83C 0.30 unknown(0) TCGA-55-A492-01 11 73679450 73679450 T - DNAJB13 Frame_Shift_Del p.F223Sfs*11 0.17 TCGA-55-A492-01 12 103232915 103232915 C A PAH 3'UTR 0.21 TCGA-55-A492-01 12 109278818 109278818 G A DAO Silent p.G12G 0.15 TCGA-55-A492-01 12 109723225 109723225 G A FOXN4 Missense_Mutation p.S262F 0.26 deleterious(0) probably_damaging(0.999) TCGA-55-A492-01 12 110765639 110765639 A G ATP2A2 Silent p.V304V 0.15 TCGA-55-A492-01 12 112305409 112305409 A G MAPKAPK5 Missense_Mutation p.N74D 0.22 tolerated(0.05) probably_damaging(0.966) TCGA-55-A492-01 12 113532912 113532912 T A DTX1 Silent p.P484P 0.44 TCGA-55-A492-01 12 123200725 123200725 C T HCAR3 Missense_Mutation p.R187Q 0.32 tolerated(0.62) benign(0.041) TCGA-55-A492-01 12 123214566 123214566 C G HCAR1 Silent p.T107T 0.20 TCGA-55-A492-01 12 20769269 20769269 C A PDE3A Silent p.R459R 0.25 TCGA-55-A492-01 12 2936798 2936798 G A NRIP2 Missense_Mutation p.S249F 0.10 deleterious(0) probably_damaging(0.995) TCGA-55-A492-01 12 49373265 49373265 T C WNT1 Missense_Mutation p.V40A 0.10 tolerated(0.56) benign(0.006) TCGA-55-A492-01 12 53849272 53849272 G T PCBP2 Nonsense_Mutation p.E41* 0.08 TCGA-55-A492-01 12 57957898 57957898 T A KIF5A Missense_Mutation p.L100Q 0.09 deleterious(0) probably_damaging(0.997) TCGA-55-A492-01 12 58156979 58156979 G T CYP27B1 Silent p.T491T 0.42 TCGA-55-A492-01 12 63195729 63195729 C A PPM1H Missense_Mutation p.R208L 0.33 tolerated(0.33) possibly_damaging(0.735) TCGA-55-A492-01 12 78225334 78225334 T C NAV3 Silent p.T31T 0.36 TCGA-55-A492-01 12 99052992 99052992 G T APAF1 Missense_Mutation p.G194V 0.41 deleterious(0.03) probably_damaging(0.992) TCGA-55-A492-01 13 106142333 106142333 G T DAOA Missense_Mutation p.R122L 0.47 tolerated_low_confidence(0.87) benign(0.433) TCGA-55-A492-01 13 19753650 19753650 G T TUBA3C Silent p.A19A 0.41 TCGA-55-A492-01 13 25370276 25370276 T C RNF17 Silent p.S414S 0.50 TCGA-55-A492-01 13 25480248 25480248 G A CENPJ Missense_Mutation p.T643I 0.24 tolerated(0.43) benign(0) TCGA-55-A492-01 13 44455356 44455356 G T LACC1 Missense_Mutation p.V79F 0.21 deleterious(0.02) benign(0.093) TCGA-55-A492-01 13 76374956 76374957 - T LMO7 5'UTR 0.32 TCGA-55-A492-01 13 97484906 97484906 G T HS6ST3 Missense_Mutation p.W290C 0.19 deleterious(0) probably_damaging(1) TCGA-55-A492-01 14 20345086 20345086 T A OR4K2 Silent p.I220I 0.07 TCGA-55-A492-01 14 24709003 24709003 T A TINF2 Nonstop_Mutation p.*452Cext*1 0.38 TCGA-55-A492-01 14 45431791 45431791 A T FAM179B Missense_Mutation p.D56V 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-A492-01 14 89338042 89338042 G T TTC8 Missense_Mutation p.W400L 0.20 deleterious(0) probably_damaging(0.979) TCGA-55-A492-01 15 25436415 25436415 G T SNORD115-11 3'Flank 0.24 TCGA-55-A492-01 15 31200400 31200400 G T FAN1 Missense_Mutation p.E438D 0.16 deleterious(0) probably_damaging(0.997) TCGA-55-A492-01 15 42680049 42680049 G A CAPN3 Silent p.E199E 0.32 TCGA-55-A492-01 15 48053419 48053419 T C SEMA6D Splice_Site p.X115_splice 0.16 TCGA-55-A492-01 15 60806833 60806833 C T RORA Missense_Mutation p.V169I 0.07 deleterious(0.03) possibly_damaging(0.853) TCGA-55-A492-01 15 69320733 69320733 G T NOX5 Intron 0.36 TCGA-55-A492-01 15 72502177 72502177 C A PKM Silent p.L134L 0.11 TCGA-55-A492-01 15 74315631 74315631 G T PML Silent p.A355A 0.27 TCGA-55-A492-01 15 81230197 81230197 A C KIAA1199 Missense_Mutation p.D1095A 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-55-A492-01 15 89388874 89388874 T C ACAN Missense_Mutation p.V397A 0.15 deleterious_low_confidence(0.03) unknown(0) TCGA-55-A492-01 15 92988034 92988034 G A ST8SIA2 Nonsense_Mutation p.W239* 0.30 TCGA-55-A492-01 16 1961984 1961984 G A HS3ST6 Silent p.G181G 0.37 TCGA-55-A492-01 16 20435279 20435279 C T ACSM5 Missense_Mutation p.T270M 0.10 tolerated(0.62) benign(0.061) TCGA-55-A492-01 16 240044 240044 A C LUC7L Missense_Mutation p.H299Q 0.17 tolerated_low_confidence(0.27) unknown(0) TCGA-55-A492-01 16 26147398 26147398 A G HS3ST4 Silent p.P400P 0.27 TCGA-55-A492-01 16 27441392 27441392 C A IL21R 5'UTR 0.35 TCGA-55-A492-01 16 30975596 30975596 C A SETD1A Missense_Mutation p.T274K 0.27 possibly_damaging(0.687) TCGA-55-A492-01 16 30991379 30991379 G T SETD1A Missense_Mutation p.M1424I 0.24 unknown(0) TCGA-55-A492-01 16 3108219 3108219 G A MMP25 Silent p.L348L 0.17 TCGA-55-A492-01 16 33020674 33020674 G T IGHV3OR16-8 Nonsense_Mutation p.G28* 0.62 TCGA-55-A492-01 16 4408412 4408412 G A CORO7 Nonsense_Mutation p.Q805* 0.12 TCGA-55-A492-01 16 48221301 48221301 G T ABCC11 Missense_Mutation p.P915Q 0.54 deleterious(0.01) probably_damaging(0.927) TCGA-55-A492-01 16 56485217 56485217 C T NUDT21 5'UTR 0.39 TCGA-55-A492-01 16 61761058 61761058 G T CDH8 Missense_Mutation p.N492K 0.31 deleterious(0.01) benign(0.172) TCGA-55-A492-01 16 62055396 62055396 C A CDH8 5'UTR 0.38 TCGA-55-A492-01 16 7568187 7568187 T A RBFOX1 Silent p.A42A 0.10 TCGA-55-A492-01 16 81249886 81249886 C - PKD1L2 Frame_Shift_Del p.D143Tfs*115 0.27 TCGA-55-A492-01 17 10297604 10297604 G T MYH8 Missense_Mutation p.L1710M 0.22 tolerated(0.13) benign(0.175) TCGA-55-A492-01 17 10406346 10406346 C A MYH1 Nonsense_Mutation p.E971* 0.33 TCGA-55-A492-01 17 17078617 17078617 A G MPRIP Missense_Mutation p.N867S 0.20 tolerated(0.05) benign(0.184) TCGA-55-A492-01 17 18918399 18918399 G T SLC5A10 Silent p.A392A 0.21 TCGA-55-A492-01 17 19645418 19645418 G A ALDH3A1 Silent p.I196I 0.13 TCGA-55-A492-01 17 21731040 21731040 C G UBBP4 Silent p.P114P 0.27 TCGA-55-A492-01 17 3628458 3628458 C A GSG2 Missense_Mutation p.T410N 0.22 tolerated(0.13) benign(0.002) TCGA-55-A492-01 17 39155888 39155888 G A KRTAP3-2 Missense_Mutation p.P73L 0.17 tolerated_low_confidence(0.07) probably_damaging(1) TCGA-55-A492-01 17 39778723 39778723 C A KRT17 Missense_Mutation p.D186Y 0.07 deleterious(0) probably_damaging(0.982) TCGA-55-A492-01 17 40362499 40362499 C A STAT5B Missense_Mutation p.R566L 0.24 deleterious(0.01) benign(0) TCGA-55-A492-01 17 41570330 41570330 C T DHX8 Missense_Mutation p.P262L 0.43 deleterious(0.05) benign(0.075) TCGA-55-A492-01 17 55951056 55951056 C A CUEDC1 Missense_Mutation p.A163S 0.09 tolerated(0.85) benign(0.002) TCGA-55-A492-01 17 56387346 56387346 G A BZRAP1 Silent p.I1291I 0.29 TCGA-55-A492-01 17 61574532 61574532 C T ACE Silent p.R1242R 0.17 TCGA-55-A492-01 17 61987077 61987077 G A CSHL1 Silent p.G221G 0.11 TCGA-55-A492-01 17 68172084 68172084 G T KCNJ2 Missense_Mutation p.V302L 0.33 deleterious(0) probably_damaging(0.997) TCGA-55-A492-01 17 74468789 74468789 G - RHBDF2 Frame_Shift_Del p.L712Sfs*205 0.23 TCGA-55-A492-01 17 74899435 74899435 C T MGAT5B Missense_Mutation p.P177S 0.07 deleterious(0.04) possibly_damaging(0.831) TCGA-55-A492-01 17 74943918 74943918 T A MGAT5B Missense_Mutation p.C653S 0.16 deleterious(0.02) possibly_damaging(0.905) TCGA-55-A492-01 17 78013852 78013852 C T CCDC40 Missense_Mutation p.T112M 0.07 tolerated(0.07) benign(0) TCGA-55-A492-01 17 78262111 78262111 C T RNF213 Silent p.P253P 0.14 TCGA-55-A492-01 17 7951097 7951097 C T ALOX15B Missense_Mutation p.P572L 0.14 deleterious(0.04) benign(0.314) TCGA-55-A492-01 17 9801522 9801522 C T RCVRN Splice_Site p.X165_splice 0.17 TCGA-55-A492-01 18 13621150 13621150 C T LDLRAD4 Silent p.V72V 0.28 TCGA-55-A492-01 18 14763797 14763797 G A ANKRD30B Silent p.E311E 0.24 TCGA-55-A492-01 18 77193606 77193606 G A NFATC1 Silent p.Q405Q 0.22 TCGA-55-A492-01 19 10602257 10602257 C A KEAP1 Nonsense_Mutation p.E441* 0.54 TCGA-55-A492-01 19 1207077 1207077 G - STK11 Frame_Shift_Del p.E57Kfs*7 0.42 TCGA-55-A492-01 19 17488010 17488010 G A PLVAP Missense_Mutation p.L30F 0.40 deleterious(0) probably_damaging(1) TCGA-55-A492-01 19 19655919 19655919 G A CILP2 Silent p.K855K 0.05 TCGA-55-A492-01 19 22363780 22363780 G A ZNF676 Missense_Mutation p.H247Y 0.24 deleterious(0.03) probably_damaging(0.964) TCGA-55-A492-01 19 31040173 31040173 A T ZNF536 Missense_Mutation p.Q1216L 0.36 tolerated_low_confidence(0.36) benign(0.159) TCGA-55-A492-01 19 31769772 31769772 G C TSHZ3 Silent p.V309V 0.15 TCGA-55-A492-01 19 39694850 39694850 G T SYCN Silent p.S15S 0.12 TCGA-55-A492-01 19 41497311 41497311 C T CYP2B6 Missense_Mutation p.P34L 0.03 deleterious(0) probably_damaging(1) TCGA-55-A492-01 19 42342197 42342197 T A LYPD4 Missense_Mutation p.N117I 0.33 deleterious(0) probably_damaging(0.933) TCGA-55-A492-01 19 42342205 42342205 G A LYPD4 Silent p.L114L 0.33 TCGA-55-A492-01 19 43575938 43575938 G C PSG2 Missense_Mutation p.T293R 0.04 tolerated(0.69) benign(0.082) TCGA-55-A492-01 19 45911979 45911979 G C CD3EAP Missense_Mutation p.K251N 0.06 deleterious(0) possibly_damaging(0.907) TCGA-55-A492-01 19 52519585 52519585 T A ZNF614 Silent p.T422T 0.46 TCGA-55-A492-01 19 54257344 54257344 T G MIR527 RNA 0.09 TCGA-55-A492-01 19 54803555 54803555 C A LILRA3 Missense_Mutation p.W90L 0.54 tolerated(0.09) benign(0.031) TCGA-55-A492-01 19 8953382 8953382 C T MBD3L1 Missense_Mutation p.R10C 0.58 tolerated(0.28) benign(0.002) TCGA-55-A492-01 1 107867321 107867321 C T NTNG1 Missense_Mutation p.H222Y 0.11 deleterious(0.01) possibly_damaging(0.753) TCGA-55-A492-01 1 110775641 110775641 G A KCNC4 3'UTR 0.33 TCGA-55-A492-01 1 150776601 150776601 A G CTSK Missense_Mutation p.S172P 0.10 tolerated(0.28) benign(0.128) TCGA-55-A492-01 1 152282951 152282951 C G FLG Missense_Mutation p.E1471Q 0.11 benign(0.403) TCGA-55-A492-01 1 157497585 157497585 G T FCRL5 Silent p.P594P 0.26 TCGA-55-A492-01 1 158725602 158725602 C A OR6K6 Missense_Mutation p.H333N 0.20 tolerated(0.3) benign(0) TCGA-55-A492-01 1 161012381 161012381 G T USF1 Missense_Mutation p.N46K 0.09 tolerated(0.05) benign(0.067) TCGA-55-A492-01 1 162546687 162546687 C T UAP1 Missense_Mutation p.T134I 0.14 deleterious(0) possibly_damaging(0.897) TCGA-55-A492-01 1 162731243 162731243 A G DDR2 Silent p.S366S 0.14 TCGA-55-A492-01 1 176525788 176525788 C A PAPPA2 Missense_Mutation p.D110E 0.31 tolerated_low_confidence(0.32) benign(0.058) TCGA-55-A492-01 1 178491534 178491534 C A TEX35 Missense_Mutation p.H221N 0.67 tolerated_low_confidence(0.42) benign(0.002) TCGA-55-A492-01 1 196205182 196205182 T A KCNT2 Missense_Mutation p.Q1077L 0.10 deleterious(0.01) benign(0.029) TCGA-55-A492-01 1 197390421 197390421 T C CRB1 Missense_Mutation p.F488S 0.11 deleterious(0.03) possibly_damaging(0.809) TCGA-55-A492-01 1 202565891 202565891 G T SYT2 Missense_Mutation p.N418K 0.42 tolerated_low_confidence(1) benign(0.012) TCGA-55-A492-01 1 214170305 214170305 C T PROX1 Missense_Mutation p.P143S 0.24 deleterious(0.03) probably_damaging(1) TCGA-55-A492-01 1 22310738 22310738 G A CELA3B Missense_Mutation p.E186K 0.26 tolerated(0.15) benign(0.002) TCGA-55-A492-01 1 22310740 22310740 A G CELA3B Silent p.E186E 0.25 TCGA-55-A492-01 1 228497226 228497226 C T OBSCN Silent p.G5283G 0.20 TCGA-55-A492-01 1 237870359 237870359 A T RYR2 Missense_Mutation p.M3231L 0.05 benign(0.061) TCGA-55-A492-01 1 238090621 238090621 G C RP11-193H5.1 RNA 0.58 TCGA-55-A492-01 1 244218481 244218481 C A ZBTB18 Missense_Mutation p.H469N 0.10 deleterious(0) possibly_damaging(0.852) TCGA-55-A492-01 1 246810551 246810551 A T CNST Missense_Mutation p.S350C 0.08 deleterious(0.01) benign(0.026) TCGA-55-A492-01 1 247978742 247978742 G A OR14A16 Missense_Mutation p.S97F 0.12 deleterious(0.04) possibly_damaging(0.56) TCGA-55-A492-01 1 248059320 248059320 G T OR2W3 Missense_Mutation p.L144F 0.32 deleterious(0) benign(0.35) TCGA-55-A492-01 1 248128813 248128813 G T OR2AK2 Silent p.L60L 0.10 TCGA-55-A492-01 1 248263135 248263135 T A OR2L13 Missense_Mutation p.I153N 0.07 deleterious(0) possibly_damaging(0.814) TCGA-55-A492-01 1 248487440 248487440 A G OR2M7 Missense_Mutation p.M144T 0.11 deleterious(0.01) benign(0.012) TCGA-55-A492-01 1 248487781 248487781 C A OR2M7 Silent p.L30L 0.13 TCGA-55-A492-01 1 3334539 3334539 G C PRDM16 Missense_Mutation p.G947R 0.31 deleterious(0.01) benign(0.417) TCGA-55-A492-01 1 34383777 34383777 T A CSMD2 Missense_Mutation p.I240F 0.17 deleterious(0.02) probably_damaging(0.93) TCGA-55-A492-01 1 35369946 35369946 C - DLGAP3 Frame_Shift_Del p.A347Pfs*121 0.18 TCGA-55-A492-01 1 36564371 36564371 C T COL8A2 Missense_Mutation p.R304Q 0.12 tolerated(0.42) unknown(0) TCGA-55-A492-01 1 41012799 41012799 G T ZNF684 Missense_Mutation p.E268D 0.37 deleterious(0.01) benign(0.097) TCGA-55-A492-01 1 51871777 51871777 G C EPS15 Missense_Mutation p.Q493E 0.16 tolerated(0.13) benign(0.007) TCGA-55-A492-01 1 57499067 57499067 C A DAB1 Intron 0.16 TCGA-55-A492-01 1 7730968 7730968 C A CAMTA1 Intron 0.41 TCGA-55-A492-01 1 78097932 78097932 C A ZZZ3 Nonsense_Mutation p.E370* 0.33 TCGA-55-A492-01 1 86529442 86529442 C A COL24A1 Missense_Mutation p.G570C 0.19 deleterious(0) probably_damaging(1) TCGA-55-A492-01 1 95322974 95322974 G T SLC44A3 Missense_Mutation p.G386C 0.38 deleterious(0) probably_damaging(0.996) TCGA-55-A492-01 20 16316645 16316645 C G KIF16B Missense_Mutation p.E398Q 0.14 deleterious(0.02) possibly_damaging(0.877) TCGA-55-A492-01 20 24646015 24646015 C T SYNDIG1 Nonsense_Mutation p.Q218* 0.27 TCGA-55-A492-01 20 31024917 31024917 G T ASXL1 Missense_Mutation p.A1468S 0.08 deleterious(0.02) probably_damaging(0.989) TCGA-55-A492-01 20 33876334 33876334 G A FAM83C Missense_Mutation p.R246C 0.13 deleterious(0) probably_damaging(1) TCGA-55-A492-01 20 40709496 40709496 G C PTPRT 3'UTR 0.09 TCGA-55-A492-01 20 42935640 42935640 C A FITM2 Missense_Mutation p.Q138H 0.29 tolerated(0.14) benign(0.421) TCGA-55-A492-01 20 56073696 56073696 A C CTCFL Silent p.P634P 0.39 TCGA-55-A492-01 20 5925546 5925546 C A TRMT6 Missense_Mutation p.G91C 0.21 deleterious(0) probably_damaging(0.997) TCGA-55-A492-01 20 61291841 61291841 T C SLCO4A1 Missense_Mutation p.F322S 0.21 deleterious(0.03) possibly_damaging(0.47) TCGA-55-A492-01 21 19685329 19685329 G T TMPRSS15 Missense_Mutation p.H700N 0.24 deleterious(0.03) possibly_damaging(0.694) TCGA-55-A492-01 21 27938637 27938637 C A CYYR1 Nonsense_Mutation p.G42* 0.28 TCGA-55-A492-01 21 27945362 27945362 C T CYYR1 5'UTR 0.33 TCGA-55-A492-01 21 34668592 34668592 A G IL10RB Missense_Mutation p.E303G 0.15 tolerated(0.05) benign(0.029) TCGA-55-A492-01 21 40568221 40568221 T A BRWD1 Intron 0.38 TCGA-55-A492-01 21 40720491 40720491 C T HMGN1 Missense_Mutation p.E10K 0.17 tolerated(0.19) benign(0.003) TCGA-55-A492-01 21 47831535 47831535 G T PCNT Nonsense_Mutation p.E1850* 0.32 TCGA-55-A492-01 22 17472889 17472889 C T GAB4 Missense_Mutation p.G118S 0.27 tolerated(1) possibly_damaging(0.886) TCGA-55-A492-01 22 18566481 18566481 A G PEX26 Missense_Mutation p.Q217R 0.20 tolerated(0.19) benign(0.009) TCGA-55-A492-01 22 19838764 19838764 A T C22orf29 Missense_Mutation p.S341T 0.33 deleterious_low_confidence(0.02) probably_damaging(0.981) TCGA-55-A492-01 22 22317163 22317163 C A TOP3B Missense_Mutation p.G436V 0.16 deleterious(0) possibly_damaging(0.903) TCGA-55-A492-01 22 26165292 26165292 C A MYO18B Missense_Mutation p.A470D 0.43 tolerated(0.12) benign(0.109) TCGA-55-A492-01 22 37699444 37699444 G T CYTH4 Splice_Site p.X232_splice 0.11 TCGA-55-A492-01 2 125192150 125192150 C T CNTNAP5 Silent p.L207L 0.15 TCGA-55-A492-01 2 131487531 131487531 G - GPR148 Frame_Shift_Del p.I270Sfs*5 0.16 TCGA-55-A492-01 2 133540356 133540356 C T NCKAP5 Missense_Mutation p.G1343E 0.35 tolerated(0.91) benign(0.037) TCGA-55-A492-01 2 141747203 141747203 G T LRP1B Missense_Mutation p.Q890K 0.16 possibly_damaging(0.573) TCGA-55-A492-01 2 152544853 152544853 C A NEB Missense_Mutation p.A790S 0.32 benign(0.146) TCGA-55-A492-01 2 168101616 168101616 T A XIRP2 Missense_Mutation p.N1238K 0.20 benign(0.041) TCGA-55-A492-01 2 179436365 179436365 G T TTN Missense_Mutation p.P24832T 0.49 TCGA-55-A492-01 2 179437413 179437413 G T TTN Silent p.T24482T 0.10 TCGA-55-A492-01 2 179595266 179595266 C T TTN Silent p.G5998G 0.41 TCGA-55-A492-01 2 179632794 179632794 A C TTN Silent p.P3084P 0.26 TCGA-55-A492-01 2 187626989 187626989 T A FAM171B Silent p.A640A 0.25 TCGA-55-A492-01 2 190611142 190611142 A G ANKAR Missense_Mutation p.Q1365R 0.39 tolerated_low_confidence(0.31) benign(0.006) TCGA-55-A492-01 2 196791162 196791162 T A DNAH7 Silent p.P1200P 0.33 TCGA-55-A492-01 2 197183768 197183768 G C HECW2 Missense_Mutation p.P616A 0.14 tolerated_low_confidence(0.14) benign(0.002) TCGA-55-A492-01 2 223066096 223066096 G T PAX3 Intron 0.14 TCGA-55-A492-01 2 226447456 226447456 C T NYAP2 Silent p.S441S 0.22 TCGA-55-A492-01 2 233391317 233391317 C A CHRND Missense_Mutation p.P44H 0.33 deleterious(0) probably_damaging(1) TCGA-55-A492-01 2 234621904 234621904 T A UGT1A5 Missense_Mutation p.F89L 0.10 tolerated(1) benign(0.011) TCGA-55-A492-01 2 27665543 27665543 C T KRTCAP3 Silent p.T42T 0.29 TCGA-55-A492-01 2 32740150 32740150 A G BIRC6 Silent p.P3554P 0.09 TCGA-55-A492-01 2 37398721 37398721 C A SULT6B1 Nonsense_Mutation p.G175* 0.40 TCGA-55-A492-01 2 38525564 38525564 T A ATL2 Missense_Mutation p.I452F 0.15 deleterious(0) probably_damaging(0.91) TCGA-55-A492-01 2 46739754 46739754 T G ATP6V1E2 Missense_Mutation p.K33Q 0.33 deleterious(0.02) probably_damaging(0.954) TCGA-55-A492-01 2 66670040 66670040 G T MEIS1 Nonsense_Mutation p.E164* 0.25 TCGA-55-A492-01 2 70931555 70931555 G T ADD2 Missense_Mutation p.Q74K 0.33 deleterious(0) probably_damaging(0.965) TCGA-55-A492-01 2 70931556 70931556 C T ADD2 Silent p.E73E 0.32 TCGA-55-A492-01 2 73678325 73678325 T A ALMS1 Silent p.A1556A 0.33 TCGA-55-A492-01 2 89326946 89326946 C A IGKV3-11 Missense_Mutation p.V23L 0.14 deleterious(0.05) benign(0.08) TCGA-55-A492-01 2 90078069 90078069 G T IGKV3D-20 Missense_Mutation p.G36W 0.08 deleterious(0) probably_damaging(0.991) TCGA-55-A492-01 2 9468002 9468002 A G ASAP2 Silent p.L216L 0.13 TCGA-55-A492-01 2 99863227 99863227 G T LYG2 Missense_Mutation p.R34S 0.35 tolerated(0.32) possibly_damaging(0.574) TCGA-55-A492-01 2 99998619 99998619 T A EIF5B Intron 0.39 TCGA-55-A492-01 3 129195237 129195237 G T IFT122 Missense_Mutation p.G350V 0.50 deleterious(0.01) probably_damaging(1) TCGA-55-A492-01 3 139062966 139062966 A T MRPS22 Missense_Mutation p.H33L 0.26 tolerated_low_confidence(0.43) benign(0) TCGA-55-A492-01 3 14712618 14712619 - C CCDC174 Frame_Shift_Ins p.D443Rfs*16 0.13 TCGA-55-A492-01 3 164741356 164741356 A T SI Splice_Site p.X1033_splice 0.35 TCGA-55-A492-01 3 165547907 165547907 T A BCHE Silent p.A305A 0.20 TCGA-55-A492-01 3 169546559 169546559 T - LRRIQ4 Frame_Shift_Del p.L345Wfs*7 0.27 TCGA-55-A492-01 3 183273227 183273234 GTCAGAGC - KLHL6 Frame_Shift_Del p.A70Rfs*38 0.20 TCGA-55-A492-01 3 30769784 30769784 C G GADL1 Missense_Mutation p.D506H 0.19 deleterious(0) probably_damaging(0.999) TCGA-55-A492-01 3 38622507 38622507 G A SCN5A Missense_Mutation p.P1048L 0.12 deleterious(0.01) probably_damaging(1) TCGA-55-A492-01 3 38793719 38793719 G A SCN10A Silent p.V582V 0.24 TCGA-55-A492-01 3 42572377 42572377 T C VIPR1 Missense_Mutation p.F248S 0.21 deleterious(0) possibly_damaging(0.903) TCGA-55-A492-01 3 49692641 49692641 G A BSN Silent p.A1884A 0.15 TCGA-55-A492-01 3 54615854 54615854 G T CACNA2D3 Nonsense_Mutation p.E305* 0.25 TCGA-55-A492-01 3 71179714 71179714 T A FOXP1 Missense_Mutation p.S41C 0.21 deleterious_low_confidence(0) possibly_damaging(0.709) TCGA-55-A492-01 3 74315768 74315768 T C CNTN3 Silent p.V950V 0.21 TCGA-55-A492-01 3 8809375 8809375 C A OXTR Missense_Mutation p.A167S 0.48 deleterious(0) possibly_damaging(0.596) TCGA-55-A492-01 3 88205676 88205676 A T C3orf38 Missense_Mutation p.E294V 0.22 deleterious(0.02) probably_damaging(0.967) TCGA-55-A492-01 4 119659533 119659533 A C SEC24D Silent p.A793A 0.19 TCGA-55-A492-01 4 120987882 120987882 A C MAD2L1 Missense_Mutation p.L3R 0.22 tolerated(0.63) benign(0) TCGA-55-A492-01 4 121774687 121774687 C T PRDM5 Silent p.G62G 0.07 TCGA-55-A492-01 4 138451498 138451498 C T PCDH18 Missense_Mutation p.R582H 0.17 tolerated(0.58) benign(0.002) TCGA-55-A492-01 4 145628384 145628384 G T HHIP Missense_Mutation p.D377Y 0.39 deleterious(0) benign(0.389) TCGA-55-A492-01 4 39449002 39449002 T A KLB Missense_Mutation p.Y886N 0.12 deleterious(0) probably_damaging(0.997) TCGA-55-A492-01 4 44176958 44176958 T A KCTD8 Missense_Mutation p.N424I 0.44 tolerated(0.09) possibly_damaging(0.675) TCGA-55-A492-01 4 46930417 46930417 C A GABRA4 Missense_Mutation p.G497V 0.28 tolerated_low_confidence(0.18) benign(0.068) TCGA-55-A492-01 4 46930418 46930418 C A GABRA4 Missense_Mutation p.G497W 0.28 deleterious_low_confidence(0.01) probably_damaging(0.964) TCGA-55-A492-01 4 62598657 62598657 G - LPHN3 Frame_Shift_Del p.G194Efs*19 0.22 TCGA-55-A492-01 4 68372620 68372620 A G CENPC Missense_Mutation p.I646T 0.29 tolerated(0.32) benign(0.001) TCGA-55-A492-01 4 71346640 71346640 G A MUC7 Missense_Mutation p.R60K 0.19 tolerated(1) benign(0) TCGA-55-A492-01 4 8589122 8589122 T C GPR78 3'UTR 0.56 TCGA-55-A492-01 4 89036201 89036201 C G ABCG2 Missense_Mutation p.C284S 0.24 deleterious(0.02) benign(0.248) TCGA-55-A492-01 5 109153046 109153046 A T MAN2A1 Silent p.T672T 0.33 TCGA-55-A492-01 5 114961392 114961392 C G TMED7-TICAM2 Missense_Mutation p.G33A 0.21 tolerated_low_confidence(0.57) benign(0.084) TCGA-55-A492-01 5 137514352 137514352 G A BRD8 5'UTR 0.16 TCGA-55-A492-01 5 138119035 138119035 C G CTNNA1 Missense_Mutation p.A92G 0.08 tolerated(0.28) benign(0.012) TCGA-55-A492-01 5 138147983 138147983 A T CTNNA1 Nonsense_Mutation p.R194* 0.24 TCGA-55-A492-01 5 140229167 140229167 G T PCDHA9 Missense_Mutation p.A363S 0.15 tolerated_low_confidence(0.24) benign(0.307) TCGA-55-A492-01 5 140517240 140517240 G T PCDHB5 Missense_Mutation p.G742W 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-A492-01 5 140579944 140579944 G T PCDHB11 Silent p.A199A 0.33 TCGA-55-A492-01 5 140603390 140603390 C A PCDHB14 Missense_Mutation p.H105N 0.40 tolerated_low_confidence(0.23) benign(0.29) TCGA-55-A492-01 5 140720219 140720219 G T PCDHGA2 Nonsense_Mutation p.E561* 0.07 TCGA-55-A492-01 5 140720431 140720431 C A PCDHGA2 Silent p.A631A 0.39 TCGA-55-A492-01 5 156533970 156533970 G A HAVCR2 Missense_Mutation p.S21F 0.30 deleterious(0.01) benign(0.202) TCGA-55-A492-01 5 169122938 169122938 G C DOCK2 Silent p.V325V 0.38 TCGA-55-A492-01 5 169686 169686 G T PLEKHG4B Silent p.V880V 0.19 TCGA-55-A492-01 5 176523306 176523306 T C FGFR4 Missense_Mutation p.W655R 0.08 deleterious(0.01) probably_damaging(1) TCGA-55-A492-01 5 178555039 178555039 G T ADAMTS2 Missense_Mutation p.N846K 0.13 deleterious(0) benign(0.341) TCGA-55-A492-01 5 35954551 35954551 A T UGT3A1 Missense_Mutation p.V442D 0.38 tolerated(0.63) benign(0.117) TCGA-55-A492-01 5 43245703 43245703 C A NIM1K 5'UTR 0.25 TCGA-55-A492-01 5 45262010 45262010 C T HCN1 3'UTR 0.31 TCGA-55-A492-01 5 71495656 71495656 C A MAP1B Silent p.T2158T 0.35 TCGA-55-A492-01 5 75913961 75913961 G T F2RL2 Missense_Mutation p.R191S 0.26 deleterious(0) probably_damaging(0.976) TCGA-55-A492-01 5 75948601 75948601 G T IQGAP2 Silent p.R707R 0.21 TCGA-55-A492-01 5 9044583 9044583 C A SEMA5A Missense_Mutation p.A1003S 0.15 tolerated(1) benign(0.16) TCGA-55-A492-01 6 107016494 107016494 A - AIM1 3'UTR 0.19 TCGA-55-A492-01 6 112671568 112671568 T - RFPL4B Frame_Shift_Del p.F221Lfs*39 0.15 TCGA-55-A492-01 6 142714117 142714117 G - GPR126 Frame_Shift_Del p.V448Ffs*10 0.31 TCGA-55-A492-01 6 152497558 152497558 C - SYNE1 Frame_Shift_Del p.W7866Cfs*12 0.11 TCGA-55-A492-01 6 161135924 161135924 G A PLG Missense_Mutation p.A216T 0.08 tolerated(0.67) benign(0.01) TCGA-55-A492-01 6 26370682 26370682 C T BTN3A2 Missense_Mutation p.A189V 0.21 tolerated(0.06) benign(0.023) TCGA-55-A492-01 6 29394501 29394501 G T OR11A1 Silent p.L306L 0.34 TCGA-55-A492-01 6 30876887 30876887 G T GTF2H4 Missense_Mutation p.G25V 0.24 tolerated(0.18) benign(0.16) TCGA-55-A492-01 6 31625020 31625020 G A APOM Silent p.V96V 0.08 TCGA-55-A492-01 6 50683155 50683155 C A TFAP2D Silent p.L122L 0.40 TCGA-55-A492-01 6 55304313 55304313 G T HMGCLL1 Silent p.G310G 0.17 TCGA-55-A492-01 6 90660567 90660567 A G BACH2 Missense_Mutation p.C420R 0.15 deleterious(0.01) possibly_damaging(0.653) TCGA-55-A492-01 6 97053909 97053909 G C FHL5 Missense_Mutation p.E156Q 0.16 deleterious(0.05) possibly_damaging(0.687) TCGA-55-A492-01 7 100280383 100280383 G A GIGYF1 Silent p.G810G 0.14 TCGA-55-A492-01 7 101844857 101844857 C A CUX1 Silent p.L771L 0.04 TCGA-55-A492-01 7 107732078 107732078 G T LAMB4 Missense_Mutation p.A565E 0.14 tolerated(0.08) benign(0.068) TCGA-55-A492-01 7 120737767 120737767 G T CPED1 Missense_Mutation p.V211L 0.08 deleterious(0.03) benign(0.01) TCGA-55-A492-01 7 131925905 131925905 C A PLXNA4 Missense_Mutation p.E508D 0.23 deleterious(0.01) benign(0.046) TCGA-55-A492-01 7 134143769 134143769 G C AKR1B1 Missense_Mutation p.L16V 0.27 tolerated(0.63) benign(0.056) TCGA-55-A492-01 7 136587956 136587956 G T CHRM2 Intron 0.23 TCGA-55-A492-01 7 144098191 144098191 G T NOBOX Silent p.P264P 0.41 TCGA-55-A492-01 7 149485462 149485462 C T SSPO RNA 0.12 TCGA-55-A492-01 7 149575787 149575787 C T ATP6V0E2 Intron 0.09 TCGA-55-A492-01 7 19156387 19156387 G A TWIST1 Silent p.A186A 0.38 TCGA-55-A492-01 7 44736987 44736987 C - OGDH Frame_Shift_Del p.H691Mfs*13 0.14 TCGA-55-A492-01 7 45954452 45954452 C T IGFBP3 Silent p.E287E 0.14 TCGA-55-A492-01 7 53103580 53103580 G T POM121L12 Silent p.V72V 0.33 TCGA-55-A492-01 7 56131998 56131998 A G SUMF2 Silent p.A17A 0.19 TCGA-55-A492-01 7 57522237 57522237 G T ZNF716 Missense_Mutation p.Q37H 0.11 deleterious(0) probably_damaging(0.911) TCGA-55-A492-01 7 81335633 81335633 C T HGF Missense_Mutation p.G576E 0.06 tolerated(0.24) probably_damaging(0.966) TCGA-55-A492-01 7 88965576 88965576 G A ZNF804B Missense_Mutation p.D1094N 0.11 tolerated(0.09) benign(0.037) TCGA-55-A492-01 7 92825161 92825161 C A HEPACAM2 Missense_Mutation p.D419Y 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-55-A492-01 8 134050881 134050881 G T SLA Missense_Mutation p.T280N 0.17 deleterious(0.01) probably_damaging(0.917) TCGA-55-A492-01 8 143996582 143996582 G T CYP11B2 Missense_Mutation p.P159T 0.23 deleterious(0) probably_damaging(1) TCGA-55-A492-01 8 145512868 145512868 C A BOP1 Missense_Mutation p.D73Y 0.36 tolerated(0.06) possibly_damaging(0.861) TCGA-55-A492-01 8 21859769 21859769 G A XPO7 Missense_Mutation p.E977K 0.27 tolerated(0.14) benign(0.01) TCGA-55-A492-01 8 2855615 2855615 G T CSMD1 Missense_Mutation p.N2765K 0.23 benign(0.06) TCGA-55-A492-01 8 28974383 28974383 G A KIF13B Missense_Mutation p.R1268C 0.16 deleterious(0) probably_damaging(1) TCGA-55-A492-01 8 2944781 2944781 G - CSMD1 Frame_Shift_Del p.L2438* 0.08 TCGA-55-A492-01 8 52321594 52321594 G A PXDNL Missense_Mutation p.R864C 0.39 deleterious(0.03) possibly_damaging(0.55) TCGA-55-A492-01 8 52746117 52746117 T G PCMTD1 Silent p.L181L 0.12 TCGA-55-A492-01 8 71069054 71069054 G C NCOA2 Missense_Mutation p.P516A 0.15 deleterious(0.01) probably_damaging(0.931) TCGA-55-A492-01 8 72754812 72754812 C A MSC 3'UTR 0.16 TCGA-55-A492-01 8 79645900 79645900 G T IL7 3'UTR 0.14 TCGA-55-A492-01 8 89086962 89086962 A T MMP16 Missense_Mutation p.F365I 0.25 deleterious(0) benign(0.426) TCGA-55-A492-01 9 119249738 119249738 C G ASTN2 Missense_Mutation p.G1082R 0.36 tolerated(0.62) unknown(0) TCGA-55-A492-01 9 13106984 13106984 T A MPDZ Missense_Mutation p.T2036S 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-55-A492-01 9 21239671 21239671 G T IFNA14 Missense_Mutation p.F88L 0.27 tolerated(0.32) benign(0.231) TCGA-55-A492-01 9 21971111 21971111 G A CDKN2A Missense_Mutation p.H83Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-55-A492-01 9 21971128 21971128 G A CDKN2A Missense_Mutation p.T77I 0.32 deleterious(0.02) probably_damaging(0.981) TCGA-55-A492-01 9 34249823 34249823 G T UBAP1 Missense_Mutation p.S441I 0.24 deleterious(0.04) benign(0.413) TCGA-55-A492-01 9 84607105 84607105 C A SPATA31D1 Missense_Mutation p.H574N 0.39 tolerated(0.34) benign(0.041) TCGA-55-A492-01 9 86914529 86914529 G T SLC28A3 Silent p.V212V 0.17 TCGA-55-A492-01 9 94794782 94794782 T A SPTLC1 Missense_Mutation p.T463S 0.29 deleterious(0.01) benign(0.312) TCGA-55-A492-01 9 96291840 96291840 A G FAM120A Missense_Mutation p.Y571C 0.30 deleterious(0.04) benign(0.236) TCGA-55-A492-01 9 96428055 96428055 T A PHF2 Missense_Mutation p.D675E 0.13 tolerated(0.06) unknown(0) TCGA-55-A492-01 X 100402800 100402800 G T CENPI Missense_Mutation p.K625N 0.29 deleterious(0) benign(0.209) TCGA-55-A492-01 X 101620213 101620213 G T NXF2B Silent p.L411L 0.28 TCGA-55-A492-01 X 106066507 106066507 A G TBC1D8B Missense_Mutation p.N213S 0.18 tolerated(0.4) benign(0.002) TCGA-55-A492-01 X 109765031 109765031 G T TDGF1P3 RNA 0.27 TCGA-55-A492-01 X 114244193 114244193 C A IL13RA2 Missense_Mutation p.R248L 0.23 tolerated(0.16) benign(0) TCGA-55-A492-01 X 118586088 118586088 G A SLC25A43 Silent p.L269L 0.27 TCGA-55-A492-01 X 118771062 118771062 T G SEPT6 Missense_Mutation p.Y295S 0.23 deleterious(0) probably_damaging(0.999) TCGA-55-A492-01 X 120008929 120008929 G A CT47B1 Missense_Mutation p.A199V 0.30 deleterious(0.05) unknown(0) TCGA-55-A492-01 X 122802054 122802054 C A THOC2 Nonsense_Mutation p.E325* 0.21 TCGA-55-A492-01 X 12720054 12720054 G A FRMPD4 Missense_Mutation p.R332Q 0.21 deleterious(0) probably_damaging(0.991) TCGA-55-A492-01 X 129149296 129149296 G T BCORL1 Missense_Mutation p.G850W 0.10 probably_damaging(1) TCGA-55-A492-01 X 130217875 130217875 C T ARHGAP36 Missense_Mutation p.R163W 0.23 tolerated(0.08) probably_damaging(0.999) TCGA-55-A492-01 X 130678904 130678904 C A OR13H1 Missense_Mutation p.P286H 0.11 deleterious(0) probably_damaging(1) TCGA-55-A492-01 X 134166647 134166647 G T FAM127A Missense_Mutation p.Q78H 0.36 deleterious(0.01) benign(0.426) TCGA-55-A492-01 X 134481132 134481132 G T ZNF449 Missense_Mutation p.R30L 0.35 deleterious(0.01) probably_damaging(0.986) TCGA-55-A492-01 X 135428167 135428167 A T GPR112 Missense_Mutation p.T768S 0.19 deleterious(0.04) benign(0.014) TCGA-55-A492-01 X 13786287 13786287 T C OFD1 Silent p.L958L 0.18 TCGA-55-A492-01 X 138612926 138612926 G T F9 Translation_Start_Site p.M1? 0.10 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-55-A492-01 X 145076338 145076338 G T MIR888 RNA 0.36 TCGA-55-A492-01 X 147733640 147733640 G C AFF2 Missense_Mutation p.K56N 0.38 deleterious(0) probably_damaging(0.994) TCGA-55-A492-01 X 150839639 150839639 G T PASD1 Missense_Mutation p.A401S 0.06 tolerated(0.08) benign(0.422) TCGA-55-A492-01 X 151815617 151815617 G - GABRQ Frame_Shift_Del p.Y173Tfs*29 0.19 TCGA-55-A492-01 X 153040722 153040722 G C PLXNB3 Missense_Mutation p.D1423H 0.44 deleterious(0) probably_damaging(1) TCGA-55-A492-01 X 153128180 153128180 C T L1CAM Missense_Mutation p.A1238T 0.14 tolerated(0.27) benign(0.004) TCGA-55-A492-01 X 153184317 153184317 C A ARHGAP4 Missense_Mutation p.R374L 0.14 deleterious(0) possibly_damaging(0.734) TCGA-55-A492-01 X 153599395 153599395 G A FLNA Silent p.D73D 0.30 TCGA-55-A492-01 X 154736658 154736658 T C TMLHE Missense_Mutation p.H299R 0.24 deleterious(0.01) probably_damaging(0.995) TCGA-55-A492-01 X 17750341 17750341 G T NHS Missense_Mutation p.E1550D 0.30 tolerated(0.43) benign(0.129) TCGA-55-A492-01 X 20062531 20062531 C A MAP7D2 Missense_Mutation p.G277V 0.28 deleterious(0.02) probably_damaging(0.948) TCGA-55-A492-01 X 21875215 21875215 G A YY2 Missense_Mutation p.E205K 0.08 tolerated(0.1) benign(0.009) TCGA-55-A492-01 X 24761396 24761396 G C POLA1 Missense_Mutation p.G833A 0.35 tolerated(0.22) benign(0.14) TCGA-55-A492-01 X 2632486 2632486 G T CD99 Missense_Mutation p.A31S 0.07 deleterious(0.02) possibly_damaging(0.694) TCGA-55-A492-01 X 2867360 2867360 G T ARSE Missense_Mutation p.A280E 0.09 tolerated(0.31) benign(0.006) TCGA-55-A492-01 X 35989825 35989825 G C CXorf22 Missense_Mutation p.R698T 0.32 tolerated(0.2) benign(0.009) TCGA-55-A492-01 X 47919084 47919084 G A ZNF630 Silent p.A249A 0.13 TCGA-55-A492-01 X 54785022 54785022 G A ITIH6 Silent p.P495P 0.24 TCGA-55-A492-01 X 55755793 55755793 G T RRAGB Missense_Mutation p.G126V 0.19 deleterious(0) probably_damaging(1) TCGA-55-A492-01 X 65822526 65822526 C A EDA2R Missense_Mutation p.G156W 0.44 deleterious(0) probably_damaging(0.999) TCGA-55-A492-01 X 70360513 70360513 C A MED12 Missense_Mutation p.P2025T 0.15 benign(0.086) TCGA-55-A492-01 X 70389504 70389504 C A NLGN3 Missense_Mutation p.R702S 0.26 deleterious(0.04) probably_damaging(0.998) TCGA-55-A492-01 X 70756131 70756131 C A OGT Silent p.L47L 0.15 TCGA-55-A492-01 X 77275807 77275807 G T ATP7A Missense_Mutation p.G898V 0.09 deleterious(0) probably_damaging(0.996) TCGA-55-A492-01 X 82764300 82764300 G T POU3F4 Missense_Mutation p.R323L 0.10 deleterious(0) probably_damaging(1) TCGA-55-A492-01 X 92927204 92927204 T A NAP1L3 Missense_Mutation p.Y367F 0.23 tolerated(0.1) possibly_damaging(0.874) TCGA-55-A492-01 X 9656207 9656207 G T TBL1X Missense_Mutation p.A170S 0.45 tolerated(0.68) benign(0.005) TCGA-55-A493-01 10 101578665 101578665 A C ABCC2 Missense_Mutation p.K797T 0.17 deleterious(0) possibly_damaging(0.741) TCGA-55-A493-01 10 18276529 18276529 C A SLC39A12 Silent p.G406G 0.10 TCGA-55-A493-01 10 33515146 33515146 C T NRP1 Silent p.K351K 0.18 TCGA-55-A493-01 10 50255077 50255077 G C VSTM4 Missense_Mutation p.P263R 0.08 tolerated(0.52) benign(0.03) TCGA-55-A493-01 10 50819795 50819795 C A SLC18A3 Missense_Mutation p.P337T 0.07 deleterious(0.02) probably_damaging(0.986) TCGA-55-A493-01 10 76602787 76602787 G T KAT6B Missense_Mutation p.G58C 0.14 probably_damaging(0.994) TCGA-55-A493-01 10 76868956 76868956 C G DUSP13 5'Flank 0.11 TCGA-55-A493-01 10 7774372 7774372 G T ITIH2 Missense_Mutation p.K573N 0.10 tolerated(0.08) possibly_damaging(0.623) TCGA-55-A493-01 10 81372965 81372965 G A SFTPA1 Missense_Mutation p.E120K 0.09 tolerated(0.21) benign(0.057) TCGA-55-A493-01 10 83635735 83635735 A T NRG3 Silent p.P213P 0.18 TCGA-55-A493-01 10 98311145 98311145 A G TM9SF3 Silent p.Y272Y 0.20 TCGA-55-A493-01 10 99422667 99422667 G A PI4K2A Missense_Mutation p.R279Q 0.10 deleterious(0.01) probably_damaging(0.993) TCGA-55-A493-01 11 103006594 103006594 A G DYNC2H1 Missense_Mutation p.R831G 0.40 possibly_damaging(0.66) TCGA-55-A493-01 11 107506462 107506462 A T ELMOD1 Missense_Mutation p.N131Y 0.19 deleterious(0) probably_damaging(0.963) TCGA-55-A493-01 11 12262607 12262607 A T MICAL2 Silent p.I745I 0.19 TCGA-55-A493-01 11 132205042 132205042 G A NTM 3'UTR 0.06 TCGA-55-A493-01 11 4674605 4674605 G T OR51E1 Silent p.L283L 0.14 TCGA-55-A493-01 11 46780964 46780964 C T CKAP5 Missense_Mutation p.E1475K 0.11 tolerated(0.35) benign(0.014) TCGA-55-A493-01 11 51411697 51411697 G T OR4A5 Silent p.A233A 0.16 TCGA-55-A493-01 11 55927420 55927420 G T OR8K5 Missense_Mutation p.A125D 0.10 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-55-A493-01 11 6220888 6220888 T C OR52W1 Silent p.C145C 0.12 TCGA-55-A493-01 11 63312161 63312161 G A RARRES3 Missense_Mutation p.E63K 0.13 deleterious(0) probably_damaging(0.942) TCGA-55-A493-01 11 65983735 65983735 G A PACS1 Splice_Site p.X269_splice 0.12 TCGA-55-A493-01 11 721684 721684 G T EPS8L2 Silent p.A296A 0.16 TCGA-55-A493-01 11 7437333 7437333 C A SYT9 Missense_Mutation p.L369M 0.08 tolerated(0.14) probably_damaging(0.98) TCGA-55-A493-01 11 7981973 7981973 C A NLRP10 Missense_Mutation p.D396Y 0.10 deleterious(0.01) possibly_damaging(0.834) TCGA-55-A493-01 11 93822072 93822072 G C HEPHL1 Missense_Mutation p.W744C 0.07 deleterious(0) probably_damaging(0.999) TCGA-55-A493-01 12 10124250 10124250 G T CLEC12A Nonsense_Mutation p.E29* 0.17 TCGA-55-A493-01 12 101880201 101880201 A T SPIC Silent p.V133V 0.11 TCGA-55-A493-01 12 103246729 103246729 C G PAH Splice_Site p.X236_splice 0.09 TCGA-55-A493-01 12 109865285 109865285 G T MYO1H Missense_Mutation p.D599Y 0.10 deleterious(0.02) benign(0.031) TCGA-55-A493-01 12 11420364 11420364 T A PRB3 Missense_Mutation p.Q231H 0.05 tolerated(0.35) unknown(0) TCGA-55-A493-01 12 130647927 130647927 G C FZD10 Missense_Mutation p.C147S 0.09 deleterious(0) probably_damaging(0.994) TCGA-55-A493-01 12 2694620 2694620 G A CACNA1C Silent p.L806L 0.25 TCGA-55-A493-01 12 28123167 28123167 G A PTHLH 5'UTR 0.12 TCGA-55-A493-01 12 29502090 29502090 T A ERGIC2 Missense_Mutation p.I217L 0.39 deleterious(0.04) probably_damaging(0.979) TCGA-55-A493-01 12 40716278 40716278 C T LRRK2 Silent p.I1825I 0.07 TCGA-55-A493-01 12 43840411 43840411 G C ADAMTS20 Missense_Mutation p.N728K 0.10 deleterious(0) probably_damaging(0.923) TCGA-55-A493-01 12 46318686 46318686 C A SCAF11 Missense_Mutation p.R1244L 0.12 deleterious(0.01) possibly_damaging(0.574) TCGA-55-A493-01 12 50236719 50236719 G A BCDIN3D Missense_Mutation p.P51L 0.05 deleterious(0) possibly_damaging(0.908) TCGA-55-A493-01 12 52788785 52788785 C T KRT82 Missense_Mutation p.G506S 0.11 tolerated_low_confidence(0.23) benign(0.02) TCGA-55-A493-01 12 54757122 54757122 G T GPR84 Missense_Mutation p.R172S 0.19 deleterious(0) possibly_damaging(0.78) TCGA-55-A493-01 12 57604561 57604561 G A LRP1 Missense_Mutation p.C4272Y 0.07 possibly_damaging(0.854) TCGA-55-A493-01 12 58109617 58109617 T A OS9 Nonsense_Mutation p.Y218* 0.15 TCGA-55-A493-01 12 6499329 6499329 C T LTBR Missense_Mutation p.P285S 0.25 tolerated(0.12) benign(0.063) TCGA-55-A493-01 12 70072620 70072620 G C BEST3 Missense_Mutation p.L179V 0.10 tolerated(0.12) possibly_damaging(0.574) TCGA-55-A493-01 12 7241518 7241518 G A C1R Missense_Mutation p.T277I 0.30 deleterious(0.01) benign(0.162) TCGA-55-A493-01 12 81111051 81111051 G - MYF5 Frame_Shift_Del p.A71Pfs*26 0.11 TCGA-55-A493-01 12 9001397 9001397 T A A2ML1 Missense_Mutation p.W639R 0.10 tolerated(0.37) benign(0.002) TCGA-55-A493-01 12 92538060 92538060 G A BTG1 Silent p.L104L 0.11 TCGA-55-A493-01 13 103053981 103053981 T C FGF14 Silent p.L16L 0.27 TCGA-55-A493-01 13 32869531 32869531 G T FRY Missense_Mutation p.R2992S 0.16 deleterious_low_confidence(0.03) benign(0.065) TCGA-55-A493-01 13 46543990 46543990 C T ZC3H13 Missense_Mutation p.E897K 0.06 unknown(0) TCGA-55-A493-01 13 49084908 49084908 C A RCBTB2 Splice_Site p.X262_splice 0.17 TCGA-55-A493-01 13 79943016 79943016 T C RBM26 Silent p.V248V 0.20 TCGA-55-A493-01 14 105405648 105405648 A G AHNAK2 Silent p.S5380S 0.11 TCGA-55-A493-01 14 24543356 24543356 C A CPNE6 Intron 0.15 TCGA-55-A493-01 14 44974827 44974827 G T FSCB Missense_Mutation p.T455N 0.11 tolerated(0.1) benign(0.086) TCGA-55-A493-01 14 51288688 51288688 C A NIN Silent p.G29G 0.07 TCGA-55-A493-01 14 94469628 94469628 G A LINC00521 RNA 0.14 TCGA-55-A493-01 15 24921536 24921536 C A NPAP1 Missense_Mutation p.D174E 0.11 tolerated(0.21) benign(0.038) TCGA-55-A493-01 15 41571025 41571025 A T CHP1 Missense_Mutation p.R158W 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-A493-01 16 12121206 12121206 C G SNX29 Missense_Mutation p.A51G 0.08 deleterious(0.02) benign(0.15) TCGA-55-A493-01 16 1816271 1816271 G A MAPK8IP3 Missense_Mutation p.E893K 0.17 deleterious(0.04) possibly_damaging(0.694) TCGA-55-A493-01 16 18866011 18866011 C G SMG1 Missense_Mutation p.D1484H 0.12 deleterious(0.02) benign(0.191) TCGA-55-A493-01 16 19557737 19557737 T A CCP110 Silent p.A927A 0.10 TCGA-55-A493-01 16 22385642 22385642 C G CDR2 5'UTR 0.07 TCGA-55-A493-01 16 31424440 31424440 C A ITGAD Silent p.A623A 0.26 TCGA-55-A493-01 16 57104460 57104460 C T NLRC5 Nonsense_Mutation p.Q1533* 0.06 TCGA-55-A493-01 16 57282508 57282508 G C ARL2BP Missense_Mutation p.D54H 0.09 deleterious(0.03) probably_damaging(0.937) TCGA-55-A493-01 16 676121 676121 G T RAB40C Missense_Mutation p.V189L 0.14 deleterious(0) probably_damaging(0.97) TCGA-55-A493-01 16 90001702 90001718 CCGGGCCCTGACCGTGC - TUBB3 Frame_Shift_Del p.L284Hfs*66 0.08 TCGA-55-A493-01 17 21207755 21207755 G T MAP2K3 Missense_Mutation p.V196F 0.08 deleterious(0) probably_damaging(0.914) TCGA-55-A493-01 17 32688871 32688871 C G CCL1 Missense_Mutation p.E41Q 0.05 tolerated(0.14) benign(0.076) TCGA-55-A493-01 17 3493646 3493646 C T SHPK Missense_Mutation p.M215I 0.11 tolerated(0.26) possibly_damaging(0.59) TCGA-55-A493-01 17 35872792 35872792 T A DUSP14 Missense_Mutation p.W140R 0.10 deleterious(0.02) benign(0.293) TCGA-55-A493-01 17 36869000 36869000 C T MLLT6 Silent p.P259P 0.11 TCGA-55-A493-01 17 39506827 39506827 C T KRT33A Missense_Mutation p.D65N 0.07 tolerated(0.11) benign(0.262) TCGA-55-A493-01 17 51900933 51900933 C A KIF2B Missense_Mutation p.T180N 0.08 tolerated(0.28) benign(0.157) TCGA-55-A493-01 17 63221551 63221551 C A RGS9 Silent p.P613P 0.11 TCGA-55-A493-01 17 74046514 74046514 C G SRP68 Missense_Mutation p.D358H 0.09 deleterious(0) probably_damaging(0.967) TCGA-55-A493-01 17 74732257 74732257 C T SRSF2 Missense_Mutation p.A218T 0.06 deleterious_low_confidence(0.05) unknown(0) TCGA-55-A493-01 17 7577121 7577121 G T TP53 Missense_Mutation p.R273S 0.33 deleterious(0) probably_damaging(0.996) TCGA-55-A493-01 17 76498853 76498853 G A DNAH17-AS1 3'UTR 0.20 TCGA-55-A493-01 17 78262505 78262505 G A RNF213 Missense_Mutation p.R295K 0.10 benign(0) TCGA-55-A493-01 17 80574409 80574409 C A WDR45B Missense_Mutation p.A307S 0.17 tolerated(0.4) benign(0.005) TCGA-55-A493-01 18 21425017 21425017 A G LAMA3 Missense_Mutation p.I1216M 0.19 benign(0.027) TCGA-55-A493-01 18 32833591 32833591 A T ZSCAN30 Silent p.T436T 0.14 TCGA-55-A493-01 18 44561430 44561430 A T TCEB3B Nonsense_Mutation p.L69* 0.12 TCGA-55-A493-01 18 64239470 64239470 A T CDH19 5'UTR 0.31 TCGA-55-A493-01 18 74649216 74649216 G A ZNF236 Missense_Mutation p.A1565T 0.16 tolerated(0.13) possibly_damaging(0.517) TCGA-55-A493-01 19 12910718 12910718 G A PRDX2 Silent p.L156L 0.09 TCGA-55-A493-01 19 23845835 23845835 C A ZNF675 Silent p.L43L 0.11 TCGA-55-A493-01 19 35617207 35617207 G T LGI4 Missense_Mutation p.F422L 0.33 deleterious(0.04) benign(0.071) TCGA-55-A493-01 19 37310663 37310663 C T ZNF790 Missense_Mutation p.E195K 0.16 tolerated(0.09) benign(0.001) TCGA-55-A493-01 19 37441970 37441970 G T ZNF568 Nonsense_Mutation p.E639* 0.10 TCGA-55-A493-01 19 37643966 37643966 A C ZNF585A Missense_Mutation p.F224V 0.06 deleterious(0) probably_damaging(1) TCGA-55-A493-01 19 38028151 38028151 C T ZNF793 Silent p.F197F 0.13 TCGA-55-A493-01 19 40225010 40225010 C A CLC Missense_Mutation p.W72C 0.05 deleterious(0.02) probably_damaging(0.962) TCGA-55-A493-01 19 40317964 40317964 C A DYRK1B Silent p.G352G 0.27 TCGA-55-A493-01 19 40902524 40902524 C T PRX Missense_Mutation p.E579K 0.06 deleterious(0.01) possibly_damaging(0.486) TCGA-55-A493-01 19 43097975 43097975 C A CEACAM8 Missense_Mutation p.G48W 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-A493-01 19 43259260 43259260 T A PSG8 Missense_Mutation p.I290F 0.19 tolerated(0.7) possibly_damaging(0.633) TCGA-55-A493-01 19 43373098 43373098 A T PSG1 Missense_Mutation p.S266R 0.17 deleterious(0) benign(0.397) TCGA-55-A493-01 19 44051065 44051065 C T XRCC1 Missense_Mutation p.G422R 0.07 tolerated(0.42) possibly_damaging(0.814) TCGA-55-A493-01 19 44273593 44273593 C A KCNN4 Splice_Site p.X350_splice 0.17 TCGA-55-A493-01 19 44531239 44531239 C T ZNF222 Missense_Mutation p.P36L 0.17 tolerated(0.78) benign(0.024) TCGA-55-A493-01 19 45885959 45885959 C G PPP1R13L Missense_Mutation p.M758I 0.18 tolerated(0.09) benign(0.005) TCGA-55-A493-01 19 47883179 47883179 G T DHX34 Silent p.T973T 0.19 TCGA-55-A493-01 19 49318371 49318371 G C HSD17B14 Missense_Mutation p.Q133E 0.18 tolerated(0.07) benign(0.011) TCGA-55-A493-01 19 52149700 52149700 G T SIGLEC14 Missense_Mutation p.N77K 0.10 tolerated(0.13) benign(0.37) TCGA-55-A493-01 19 54203338 54203338 G A MIR518F RNA 0.23 TCGA-55-A493-01 19 56206652 56206652 G T EPN1 Missense_Mutation p.G640V 0.18 deleterious(0.03) probably_damaging(1) TCGA-55-A493-01 19 57327126 57327126 A G PEG3 Missense_Mutation p.V895A 0.22 deleterious(0) benign(0.08) TCGA-55-A493-01 19 58016028 58016028 G T ZNF773 Missense_Mutation p.G13C 0.21 deleterious(0) probably_damaging(0.94) TCGA-55-A493-01 19 58319622 58319622 G C ZNF552 Missense_Mutation p.S337C 0.08 tolerated(0.13) benign(0.002) TCGA-55-A493-01 19 8595209 8595209 G T MYO1F Missense_Mutation p.N733K 0.05 tolerated(0.25) benign(0.209) TCGA-55-A493-01 19 9024884 9024884 G - MUC16 Frame_Shift_Del p.N12327Mfs*116 0.13 TCGA-55-A493-01 19 9024895 9024895 T G MUC16 Missense_Mutation p.S12323R 0.08 possibly_damaging(0.818) TCGA-55-A493-01 19 9325052 9325052 C G OR7D4 Missense_Mutation p.W154C 0.09 tolerated(0.18) benign(0.02) TCGA-55-A493-01 1 104203096 104203096 G T AMY1A Missense_Mutation p.W331C 0.10 deleterious(0.02) probably_damaging(0.973) TCGA-55-A493-01 1 114680339 114680339 G T SYT6 Silent p.T198T 0.19 TCGA-55-A493-01 1 12016982 12016982 G T PLOD1 Missense_Mutation p.V218L 0.12 tolerated(0.3) benign(0.021) TCGA-55-A493-01 1 150235474 150235474 G A CA14 Missense_Mutation p.R199K 0.18 tolerated(0.18) benign(0.007) TCGA-55-A493-01 1 154306585 154306585 G A ATP8B2 Missense_Mutation p.E231K 0.14 tolerated(0.38) probably_damaging(0.994) TCGA-55-A493-01 1 155030164 155030164 G T ADAM15 Missense_Mutation p.A459S 0.10 deleterious(0.02) possibly_damaging(0.859) TCGA-55-A493-01 1 155289624 155289624 G A FDPS Missense_Mutation p.G322S 0.09 deleterious(0.04) possibly_damaging(0.863) TCGA-55-A493-01 1 158576528 158576528 G A OR10Z1 Silent p.Q100Q 0.05 TCGA-55-A493-01 1 158641868 158641868 C A SPTA1 Missense_Mutation p.S490I 0.06 deleterious(0) possibly_damaging(0.905) TCGA-55-A493-01 1 161816263 161816263 A G ATF6 Silent p.R404R 0.17 TCGA-55-A493-01 1 163297277 163297277 G A NUF2 Splice_Site p.X42_splice 0.08 TCGA-55-A493-01 1 167339407 167339407 G A POU2F1 Missense_Mutation p.A80T 0.08 tolerated_low_confidence(0.08) unknown(0) TCGA-55-A493-01 1 170961417 170961417 G T MROH9 Missense_Mutation p.V381L 0.09 tolerated(1) benign(0.001) TCGA-55-A493-01 1 17395667 17395667 G T PADI2 Missense_Mutation p.P624T 0.10 deleterious(0) probably_damaging(0.991) TCGA-55-A493-01 1 205238491 205238491 G T TMCC2 Silent p.V387V 0.20 TCGA-55-A493-01 1 214818160 214818160 G A CENPF Silent p.L1749L 0.12 TCGA-55-A493-01 1 216251655 216251655 G T USH2A Missense_Mutation p.A1783D 0.06 benign(0.102) TCGA-55-A493-01 1 220232113 220232113 C A BPNT1 3'UTR 0.12 TCGA-55-A493-01 1 229770666 229770666 C T URB2 Silent p.I102I 0.18 TCGA-55-A493-01 1 22987403 22987403 G T C1QB Missense_Mutation p.G96C 0.15 deleterious(0) probably_damaging(1) TCGA-55-A493-01 1 238048533 238048533 G C ZP4 Missense_Mutation p.Q415E 0.14 deleterious(0) possibly_damaging(0.902) TCGA-55-A493-01 1 243579077 243579077 G T SDCCAG8 Nonsense_Mutation p.E564* 0.14 TCGA-55-A493-01 1 247065836 247065836 C A AHCTF1 Missense_Mutation p.V379L 0.07 tolerated(0.05) benign(0.009) TCGA-55-A493-01 1 247752040 247752040 G T OR2G2 Missense_Mutation p.V127L 0.05 deleterious(0.03) benign(0.072) TCGA-55-A493-01 1 248263109 248263109 T A OR2L13 Silent p.I144I 0.05 TCGA-55-A493-01 1 248344004 248344004 G C OR2M2 Silent p.T239T 0.06 TCGA-55-A493-01 1 248685322 248685322 T G OR2G6 Silent p.A125A 0.07 TCGA-55-A493-01 1 248685323 248685323 G A OR2G6 Missense_Mutation p.V126I 0.07 tolerated(0.6) benign(0.032) TCGA-55-A493-01 1 28148839 28148839 G A STX12 Silent p.%3D 0.07 TCGA-55-A493-01 1 28212410 28212410 G C THEMIS2 Missense_Mutation p.E637Q 0.12 deleterious(0.04) benign(0.346) TCGA-55-A493-01 1 32167798 32167798 G T COL16A1 5'UTR 0.11 TCGA-55-A493-01 1 32167799 32167799 G T COL16A1 5'UTR 0.10 TCGA-55-A493-01 1 40209550 40209550 A T PPIE Missense_Mutation p.N113I 0.22 deleterious(0.02) benign(0.323) TCGA-55-A493-01 1 53544282 53544282 A G PODN Missense_Mutation p.Y415C 0.06 deleterious(0) probably_damaging(0.998) TCGA-55-A493-01 1 61743207 61743207 A T NFIA Missense_Mutation p.E237V 0.22 tolerated(0.13) benign(0.32) TCGA-55-A493-01 1 6279359 6279359 G A RNF207 Nonsense_Mutation p.W599* 0.11 TCGA-55-A493-01 1 65845193 65845193 G A DNAJC6 Missense_Mutation p.V218I 0.14 tolerated(0.32) probably_damaging(0.987) TCGA-55-A493-01 1 70587481 70587481 G T LRRC7 Missense_Mutation p.V1509L 0.09 tolerated(0.61) benign(0.017) TCGA-55-A493-01 1 75684206 75684206 G T SLC44A5 Missense_Mutation p.P500T 0.07 deleterious(0) probably_damaging(0.999) TCGA-55-A493-01 1 9780186 9780186 G T PIK3CD Silent p.L452L 0.08 TCGA-55-A493-01 20 3233116 3233116 C A C20orf194 3'UTR 0.15 TCGA-55-A493-01 20 34241661 34241661 C G RBM12 Missense_Mutation p.Q528H 0.14 tolerated(0.35) benign(0.132) TCGA-55-A493-01 20 34451132 34451132 G T PHF20 Silent p.G206G 0.21 TCGA-55-A493-01 20 34451301 34451301 C A PHF20 Missense_Mutation p.P263T 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-55-A493-01 20 3846567 3846567 T G MAVS Missense_Mutation p.F466V 0.10 deleterious(0.03) benign(0.389) TCGA-55-A493-01 20 3846577 3846577 A T MAVS Missense_Mutation p.H469L 0.08 deleterious(0) possibly_damaging(0.796) TCGA-55-A493-01 20 51870909 51870909 T A TSHZ2 Silent p.P304P 0.37 TCGA-55-A493-01 20 55904914 55904914 G T SPO11 5'UTR 0.22 TCGA-55-A493-01 20 57766303 57766303 C T ZNF831 Silent p.L77L 0.37 TCGA-55-A493-01 20 57876712 57876712 C T EDN3 Silent p.F100F 0.12 TCGA-55-A493-01 20 61340858 61340858 C T NTSR1 Missense_Mutation p.T100M 0.15 deleterious(0.02) probably_damaging(0.947) TCGA-55-A493-01 20 61386136 61386136 G A NTSR1 Missense_Mutation p.E272K 0.11 tolerated(0.3) benign(0.05) TCGA-55-A493-01 20 62332016 62332016 G C ARFRP1 Missense_Mutation p.S152R 0.08 tolerated(0.14) benign(0.01) TCGA-55-A493-01 20 9400463 9400463 C G PLCB4 Silent p.L675L 0.15 TCGA-55-A493-01 21 19744511 19744511 A T TMPRSS15 Nonsense_Mutation p.C221* 0.17 TCGA-55-A493-01 21 37595648 37595648 G T DOPEY2 Missense_Mutation p.R457I 0.17 deleterious(0) possibly_damaging(0.602) TCGA-55-A493-01 21 38437993 38437993 T C PIGP Silent p.Q122Q 0.11 TCGA-55-A493-01 21 43248563 43248563 C A PRDM15 Missense_Mutation p.R864L 0.10 deleterious(0.03) possibly_damaging(0.905) TCGA-55-A493-01 22 39222551 39222551 A T NPTXR Missense_Mutation p.L351Q 0.08 deleterious(0) probably_damaging(1) TCGA-55-A493-01 22 44064756 44064756 C G EFCAB6 Missense_Mutation p.E604Q 0.14 tolerated(0.08) benign(0.424) TCGA-55-A493-01 22 45795001 45795001 G A SMC1B Nonsense_Mutation p.R363* 0.11 TCGA-55-A493-01 2 108478164 108478164 G T RGPD4 Missense_Mutation p.D725Y 0.19 deleterious(0) benign(0.069) TCGA-55-A493-01 2 109367717 109367717 C T RANBP2 Intron 0.09 TCGA-55-A493-01 2 11706731 11706731 G A GREB1 Missense_Mutation p.A135T 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-55-A493-01 2 11758417 11758417 C T GREB1 Missense_Mutation p.S1139L 0.12 tolerated(0.05) benign(0.22) TCGA-55-A493-01 2 128409358 128409358 G A GPR17 3'UTR 0.10 TCGA-55-A493-01 2 131520531 131520531 G T AMER3 Missense_Mutation p.A296S 0.17 deleterious(0) probably_damaging(0.992) TCGA-55-A493-01 2 131976295 131976295 C A POTEE Missense_Mutation p.P107H 0.09 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-55-A493-01 2 133539998 133539998 C A NCKAP5 Silent p.V1462V 0.10 TCGA-55-A493-01 2 160085324 160085324 G C TANC1 Missense_Mutation p.E1356D 0.07 deleterious(0) probably_damaging(0.999) TCGA-55-A493-01 2 167168101 167168101 C A SCN9A Missense_Mutation p.G56C 0.17 tolerated(0.26) probably_damaging(1) TCGA-55-A493-01 2 169707821 169707821 G A NOSTRIN Silent p.K311K 0.18 TCGA-55-A493-01 2 175446110 175446110 G A WIPF1 Missense_Mutation p.L37F 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-A493-01 2 17697560 17697560 C G RAD51AP2 Missense_Mutation p.C708S 0.13 tolerated(0.19) benign(0.002) TCGA-55-A493-01 2 176996316 176996316 C T HOXD8 Silent p.D283D 0.20 TCGA-55-A493-01 2 179602899 179602899 T C TTN Missense_Mutation p.R4761G 0.14 TCGA-55-A493-01 2 185802575 185802575 A T ZNF804A Nonsense_Mutation p.R818* 0.15 TCGA-55-A493-01 2 186671207 186671207 C T FSIP2 Missense_Mutation p.S5814L 0.09 benign(0.041) TCGA-55-A493-01 2 19552091 19552091 T C OSR1 Missense_Mutation p.H249R 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-A493-01 2 198540074 198540074 C T RFTN2 Missense_Mutation p.E37K 0.14 deleterious(0) probably_damaging(0.999) TCGA-55-A493-01 2 206592740 206592740 G C NRP2 Missense_Mutation p.W372C 0.15 deleterious(0) probably_damaging(1) TCGA-55-A493-01 2 21229381 21229381 A C APOB Silent p.T3453T 0.10 TCGA-55-A493-01 2 220115405 220115405 C T TUBA4A Missense_Mutation p.R339H 0.05 tolerated_low_confidence(0.06) benign(0.054) TCGA-55-A493-01 2 232790146 232790146 G T NPPC Missense_Mutation p.L124M 0.20 tolerated(0.39) possibly_damaging(0.887) TCGA-55-A493-01 2 233404777 233404777 C T CHRNG Missense_Mutation p.A44V 0.11 tolerated(1) benign(0.014) TCGA-55-A493-01 2 239988489 239988489 C T HDAC4 Missense_Mutation p.E973K 0.25 deleterious(0) probably_damaging(1) TCGA-55-A493-01 2 25973090 25973094 TTCTT - ASXL2 Frame_Shift_Del p.K444Rfs*3 0.08 TCGA-55-A493-01 2 29084070 29084070 C A TRMT61B Missense_Mutation p.V303L 0.10 tolerated(0.34) benign(0.005) TCGA-55-A493-01 2 44073349 44073349 C A ABCG8 Missense_Mutation p.P74H 0.08 deleterious(0) probably_damaging(0.992) TCGA-55-A493-01 2 46739532 46739532 C A ATP6V1E2 Nonsense_Mutation p.E107* 0.08 TCGA-55-A493-01 2 56420236 56420236 A T CCDC85A Missense_Mutation p.S301C 0.11 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-55-A493-01 2 62449724 62449724 G C B3GNT2 Missense_Mutation p.L123F 0.08 deleterious(0.01) possibly_damaging(0.638) TCGA-55-A493-01 2 62450361 62450361 A G B3GNT2 Missense_Mutation p.T336A 0.18 tolerated(0.3) possibly_damaging(0.903) TCGA-55-A493-01 2 71742879 71742879 G C DYSF Missense_Mutation p.E296Q 0.09 tolerated(0.09) probably_damaging(0.95) TCGA-55-A493-01 2 72359433 72359433 C T CYP26B1 Missense_Mutation p.V488I 0.26 tolerated(0.08) possibly_damaging(0.889) TCGA-55-A493-01 2 73118656 73118656 A T SPR Missense_Mutation p.Y259F 0.10 tolerated(0.26) benign(0.008) TCGA-55-A493-01 2 79349202 79349202 G T REG1A Missense_Mutation p.S91I 0.10 tolerated(0.16) probably_damaging(0.945) TCGA-55-A493-01 2 79363955 79363955 C A REG1P RNA 0.10 TCGA-55-A493-01 2 80773110 80773110 C G CTNNA2 Missense_Mutation p.Q488E 0.12 tolerated(0.72) benign(0.014) TCGA-55-A493-01 2 8872022 8872022 C A KIDINS220 Nonsense_Mutation p.E1382* 0.07 TCGA-55-A493-01 2 89265778 89265778 G T IGKV1-6 3'Flank 0.10 TCGA-55-A493-01 2 89976374 89976374 G C IGKV2D-30 Missense_Mutation p.G82A 0.16 deleterious(0) probably_damaging(0.961) TCGA-55-A493-01 3 111603683 111603683 C T PHLDB2 Silent p.S253S 0.13 TCGA-55-A493-01 3 111887726 111887726 G A SLC9C1 Nonsense_Mutation p.Q1079* 0.26 TCGA-55-A493-01 3 113955600 113955600 C G ZNF80 Missense_Mutation p.V108L 0.12 tolerated(0.67) benign(0.049) TCGA-55-A493-01 3 13363283 13363283 C A NUP210 Missense_Mutation p.K1656N 0.15 deleterious(0.03) benign(0.287) TCGA-55-A493-01 3 138255975 138255975 A G CEP70 Intron 0.09 TCGA-55-A493-01 3 167250715 167250715 G T WDR49 Missense_Mutation p.H317N 0.17 tolerated(0.07) benign(0.111) TCGA-55-A493-01 3 185393094 185393094 A G IGF2BP2 Missense_Mutation p.L354P 0.11 deleterious(0.02) benign(0.397) TCGA-55-A493-01 3 74315733 74315733 A T CNTN3 Missense_Mutation p.L962H 0.19 deleterious(0) probably_damaging(0.991) TCGA-55-A493-01 3 8983324 8983324 G A RAD18 Missense_Mutation p.S144F 0.07 deleterious(0) possibly_damaging(0.707) TCGA-55-A493-01 4 113362114 113362114 G A ALPK1 Missense_Mutation p.D1194N 0.13 deleterious(0) probably_damaging(1) TCGA-55-A493-01 4 114275159 114275159 G T ANK2 Missense_Mutation p.E1795D 0.11 benign(0.059) TCGA-55-A493-01 4 114275770 114275770 C T ANK2 Missense_Mutation p.S1999L 0.14 possibly_damaging(0.767) TCGA-55-A493-01 4 128565196 128565196 G C INTU Missense_Mutation p.G223R 0.07 deleterious(0) probably_damaging(0.978) TCGA-55-A493-01 4 138451146 138451146 G T PCDH18 Silent p.S699S 0.09 TCGA-55-A493-01 4 138452820 138452820 G A PCDH18 Silent p.L141L 0.12 TCGA-55-A493-01 4 16504251 16504251 C G LDB2 3'UTR 0.12 TCGA-55-A493-01 4 166960583 166960583 A T TLL1 Silent p.S417S 0.24 TCGA-55-A493-01 4 166964496 166964496 C - TLL1 Frame_Shift_Del p.P484Rfs*2 0.10 TCGA-55-A493-01 4 174312422 174312422 C T SCRG1 Silent p.L48L 0.12 TCGA-55-A493-01 4 17590461 17590461 G A LAP3 Missense_Mutation p.E242K 0.10 tolerated(0.15) benign(0.007) TCGA-55-A493-01 4 186572939 186572939 T A SORBS2 Silent p.A226A 0.15 TCGA-55-A493-01 4 187208871 187208871 T C F11 Missense_Mutation p.I537T 0.11 deleterious(0) benign(0.299) TCGA-55-A493-01 4 46967179 46967179 G A GABRA4 Silent p.S314S 0.12 TCGA-55-A493-01 4 54011593 54011593 C G SCFD2 Missense_Mutation p.D490H 0.15 deleterious(0.05) possibly_damaging(0.859) TCGA-55-A493-01 4 62812669 62812669 G T LPHN3 Missense_Mutation p.L751F 0.13 deleterious(0.01) benign(0.168) TCGA-55-A493-01 4 860221 860221 C A GAK Missense_Mutation p.V992F 0.17 deleterious(0.02) benign(0.158) TCGA-55-A493-01 4 88902885 88902885 C A SPP1 Silent p.R159R 0.09 TCGA-55-A493-01 4 98480261 98480261 T A STPG2 Missense_Mutation p.Q443L 0.14 tolerated(0.06) benign(0.187) TCGA-55-A493-01 5 10415713 10415713 G T MARCH6 Missense_Mutation p.V694L 0.13 tolerated(0.64) benign(0.004) TCGA-55-A493-01 5 1089144 1089144 C A SLC12A7 Missense_Mutation p.A148S 0.18 deleterious(0.03) benign(0.279) TCGA-55-A493-01 5 133634305 133634305 C A CDKL3 3'UTR 0.25 TCGA-55-A493-01 5 134223521 134223521 G C TXNDC15 Silent p.A80A 0.19 TCGA-55-A493-01 5 137664210 137664210 C T CDC25C Missense_Mutation p.D100N 0.11 deleterious(0.05) benign(0.059) TCGA-55-A493-01 5 137681289 137681289 G T FAM53C Missense_Mutation p.K304N 0.21 deleterious(0) possibly_damaging(0.895) TCGA-55-A493-01 5 140044602 140044602 C T WDR55 Silent p.I35I 0.11 TCGA-55-A493-01 5 140176743 140176743 C T PCDHA2 Missense_Mutation p.R732C 0.28 tolerated_low_confidence(1) benign(0) TCGA-55-A493-01 5 140724833 140724833 C A PCDHGA3 Missense_Mutation p.D411E 0.30 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-55-A493-01 5 140724834 140724834 C T PCDHGA3 Missense_Mutation p.R412C 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-A493-01 5 140731832 140731832 C A PCDHGB1 Missense_Mutation p.P669T 0.20 tolerated(0.06) possibly_damaging(0.717) TCGA-55-A493-01 5 140744136 140744136 G A PCDHGA5 Missense_Mutation p.R80Q 0.15 deleterious_low_confidence(0.04) benign(0.292) TCGA-55-A493-01 5 140789108 140789108 G A PCDHGB6 Missense_Mutation p.D447N 0.13 deleterious(0.01) probably_damaging(0.913) TCGA-55-A493-01 5 141337082 141337082 G T PCDH12 Missense_Mutation p.A112D 0.37 deleterious(0.04) probably_damaging(0.921) TCGA-55-A493-01 5 154395494 154395494 A T KIF4B Missense_Mutation p.N692I 0.20 deleterious(0) benign(0.197) TCGA-55-A493-01 5 156899840 156899840 C - NIPAL4 Frame_Shift_Del p.P426Lfs*22 0.21 TCGA-55-A493-01 5 22078688 22078688 G T CDH12 Missense_Mutation p.T33K 0.17 tolerated(1) benign(0.01) TCGA-55-A493-01 5 33458712 33458712 T C TARS Silent p.S375S 0.09 TCGA-55-A493-01 5 33937059 33937059 G T RXFP3 Nonsense_Mutation p.E72* 0.15 TCGA-55-A493-01 5 3599620 3599620 G A IRX1 Silent p.K186K 0.10 TCGA-55-A493-01 5 38481972 38481972 G T LIFR Missense_Mutation p.L1007I 0.08 deleterious(0.02) probably_damaging(0.973) TCGA-55-A493-01 5 38933465 38933465 G A OSMR Silent p.L953L 0.18 TCGA-55-A493-01 5 41909947 41909947 C G C5orf51 Missense_Mutation p.L103V 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-55-A493-01 5 5463160 5463160 C T KIAA0947 Missense_Mutation p.S1238L 0.18 tolerated(0.22) benign(0.081) TCGA-55-A493-01 5 5464602 5464602 G T KIAA0947 Missense_Mutation p.A1719S 0.10 tolerated(0.15) possibly_damaging(0.904) TCGA-55-A493-01 5 71757020 71757020 C T ZNF366 Missense_Mutation p.E102K 0.08 tolerated_low_confidence(0.07) benign(0.171) TCGA-55-A493-01 5 81613924 81613924 G T ATP6AP1L Silent p.L160L 0.16 TCGA-55-A493-01 5 94922416 94922416 G T ARSK Missense_Mutation p.A284S 0.24 tolerated(0.14) probably_damaging(0.967) TCGA-55-A493-01 6 110300983 110300983 C A GPR6 Missense_Mutation p.A223E 0.26 deleterious(0) benign(0.23) TCGA-55-A493-01 6 114383971 114383971 G T HS3ST5 Silent p.L13L 0.09 TCGA-55-A493-01 6 118606358 118606358 G T SLC35F1 Missense_Mutation p.V287F 0.08 deleterious(0.04) benign(0.198) TCGA-55-A493-01 6 123318870 123318870 T A CLVS2 5'UTR 0.09 TCGA-55-A493-01 6 139094912 139094912 A C CCDC28A Missense_Mutation p.Q34P 0.12 deleterious_low_confidence(0) benign(0.159) TCGA-55-A493-01 6 139609880 139609880 G T TXLNB Missense_Mutation p.P53T 0.09 tolerated(0.09) benign(0.046) TCGA-55-A493-01 6 143091983 143091983 G A HIVEP2 Missense_Mutation p.P1298L 0.14 tolerated(0.16) benign(0.002) TCGA-55-A493-01 6 146755604 146755604 G T GRM1 Missense_Mutation p.G1086V 0.17 deleterious_low_confidence(0.04) benign(0.028) TCGA-55-A493-01 6 147612285 147612285 G - STXBP5 Frame_Shift_Del p.E299Nfs*23 0.25 TCGA-55-A493-01 6 169621551 169621551 A G THBS2 Silent p.T1115T 0.08 TCGA-55-A493-01 6 26217427 26217427 G A HIST1H2AE Silent p.K75K 0.12 TCGA-55-A493-01 6 33639051 33639051 C T ITPR3 Missense_Mutation p.P899L 0.20 tolerated(0.46) benign(0.001) TCGA-55-A493-01 6 34256708 34256708 C A NUDT3 Missense_Mutation p.G114V 0.11 deleterious(0) probably_damaging(1) TCGA-55-A493-01 6 35438399 35438399 G C RPL10A Missense_Mutation p.D176H 0.22 deleterious(0.03) benign(0.264) TCGA-55-A493-01 6 51890299 51890299 C G PKHD1 Missense_Mutation p.G1437R 0.14 tolerated(0.17) benign(0.049) TCGA-55-A493-01 6 76023590 76023590 A C FILIP1 Missense_Mutation p.L653W 0.07 deleterious(0) probably_damaging(1) TCGA-55-A493-01 7 100551923 100551923 C T MUC3A Missense_Mutation p.A225V 0.11 deleterious(0) possibly_damaging(0.739) TCGA-55-A493-01 7 107696087 107696087 C T LAMB4 Missense_Mutation p.D1249N 0.13 deleterious(0.04) possibly_damaging(0.649) TCGA-55-A493-01 7 128489395 128489395 G A FLNC Silent p.L1654L 0.26 TCGA-55-A493-01 7 135279335 135279335 G A NUP205 Nonsense_Mutation p.W624* 0.09 TCGA-55-A493-01 7 142111495 142111495 C T TRBV5-7 Missense_Mutation p.D81N 0.10 tolerated(0.14) benign(0.005) TCGA-55-A493-01 7 14613927 14613927 C T DGKB Silent p.R561R 0.15 TCGA-55-A493-01 7 148802473 148802473 C T ZNF425 Missense_Mutation p.D164N 0.10 tolerated(1) benign(0) TCGA-55-A493-01 7 149486261 149486261 G T SSPO RNA 0.11 TCGA-55-A493-01 7 15599774 15599774 T A AGMO Silent p.R83R 0.09 TCGA-55-A493-01 7 21630880 21630880 G C DNAH11 Silent p.L784L 0.07 TCGA-55-A493-01 7 2696040 2696040 G A TTYH3 Silent p.V374V 0.12 TCGA-55-A493-01 7 30490879 30490879 G A NOD1 Silent p.Y718Y 0.15 TCGA-55-A493-01 7 42065980 42065980 G C GLI3 Missense_Mutation p.P354A 0.12 deleterious(0) probably_damaging(0.998) TCGA-55-A493-01 7 4862062 4862062 G C RADIL Silent p.L526L 0.11 TCGA-55-A493-01 7 76247512 76247512 G T POMZP3 Missense_Mutation p.D111E 0.15 tolerated_low_confidence(0.16) possibly_damaging(0.897) TCGA-55-A493-01 7 90895711 90895711 C T FZD1 Silent p.L506L 0.05 TCGA-55-A493-01 7 92763399 92763399 C A SAMD9L Missense_Mutation p.R629L 0.08 deleterious(0) benign(0.152) TCGA-55-A493-01 8 100568676 100568676 A G VPS13B Splice_Site p.X1607_splice 0.17 TCGA-55-A493-01 8 114111076 114111076 C T CSMD3 Missense_Mutation p.G276R 0.11 deleterious(0.01) probably_damaging(0.992) TCGA-55-A493-01 8 121301936 121301936 C T COL14A1 Silent p.I1389I 0.12 TCGA-55-A493-01 8 123966129 123966129 C T ZHX2 Silent p.Y793Y 0.09 TCGA-55-A493-01 8 131073028 131073028 C A ASAP1 Missense_Mutation p.D997Y 0.09 tolerated(0.33) benign(0.424) TCGA-55-A493-01 8 133036672 133036672 C G OC90 3'UTR 0.31 TCGA-55-A493-01 8 143694459 143694459 G A ARC Missense_Mutation p.R392W 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.528) TCGA-55-A493-01 8 143866683 143866683 C A LY6D Missense_Mutation p.G114V 0.21 tolerated(0.27) unknown(0) TCGA-55-A493-01 8 145637835 145637835 G A SLC39A4 3'UTR 0.08 TCGA-55-A493-01 8 29025069 29025069 C T KIF13B Missense_Mutation p.V327M 0.11 deleterious(0) probably_damaging(0.998) TCGA-55-A493-01 8 40532244 40532244 G T ZMAT4 Missense_Mutation p.L186M 0.15 tolerated(0.1) probably_damaging(0.945) TCGA-55-A493-01 8 48309083 48309083 G A SPIDR Missense_Mutation p.D225N 0.21 tolerated(0.68) benign(0.002) TCGA-55-A493-01 8 77762550 77762550 C A ZFHX4 Silent p.R1306R 0.21 TCGA-55-A493-01 8 77766327 77766327 C T ZFHX4 Silent p.P2390P 0.08 TCGA-55-A493-01 8 95188783 95188783 T A CDH17 Missense_Mutation p.Q137L 0.19 deleterious(0) possibly_damaging(0.864) TCGA-55-A493-01 8 95188784 95188784 G A CDH17 Nonsense_Mutation p.Q137* 0.19 TCGA-55-A493-01 8 97156875 97156875 G A GDF6 Silent p.I428I 0.14 TCGA-55-A493-01 9 108145506 108145506 G T SLC44A1 Missense_Mutation p.A579S 0.21 tolerated(0.19) possibly_damaging(0.467) TCGA-55-A493-01 9 117266556 117266556 G A DFNB31 Silent p.L176L 0.17 TCGA-55-A493-01 9 135139695 135139695 C T SETX Silent p.R2655R 0.16 TCGA-55-A493-01 9 140059825 140059825 C A GRIN1 Intron 0.16 TCGA-55-A493-01 9 21350776 21350776 G T IFNA6 Silent p.T37T 0.10 TCGA-55-A493-01 9 2718916 2718916 C G KCNV2 Missense_Mutation p.H393D 0.16 deleterious(0) probably_damaging(0.998) TCGA-55-A493-01 9 32630068 32630068 C G TAF1L 3'UTR 0.15 TCGA-55-A493-01 9 84533001 84533001 G T SPATA31D5P RNA 0.22 TCGA-55-A493-01 X 100273984 100273984 C A TRMT2B Missense_Mutation p.G455V 0.10 deleterious(0) probably_damaging(0.984) TCGA-55-A493-01 X 105277376 105277376 C T SERPINA7 3'UTR 0.14 TCGA-55-A493-01 X 128582413 128582413 T A SMARCA1 Missense_Mutation p.Q1013L 0.21 tolerated(0.12) possibly_damaging(0.874) TCGA-55-A493-01 X 152845595 152845595 G A ATP2B3 Missense_Mutation p.E1168K 0.07 tolerated_low_confidence(0.67) benign(0.046) TCGA-55-A493-01 X 19649988 19649988 G A SH3KBP1 Silent p.I297I 0.14 TCGA-55-A493-01 X 21675703 21675703 G T KLHL34 Silent p.R68R 0.14 TCGA-55-A493-01 X 27997632 27997632 G T DCAF8L1 3'UTR 0.14 TCGA-55-A493-01 X 53591561 53591561 C G HUWE1 Missense_Mutation p.E2335Q 0.09 benign(0.005) TCGA-55-A493-01 X 56591111 56591111 C T UBQLN2 Missense_Mutation p.R269W 0.13 deleterious(0) benign(0.256) TCGA-55-A493-01 X 8553414 8553414 C G KAL1 Silent p.L250L 0.13 TCGA-55-A493-01 X 9863284 9863284 G A SHROOM2 Missense_Mutation p.E446K 0.10 tolerated(0.39) benign(0.021) TCGA-55-A494-01 10 102987484 102987484 G A LBX1 Missense_Mutation p.T130M 0.28 deleterious(0) probably_damaging(1) TCGA-55-A494-01 10 112361781 112361781 A - SMC3 Frame_Shift_Del p.K985Rfs*7 0.24 TCGA-55-A494-01 10 116307426 116307426 G A ABLIM1 Silent p.T261T 0.27 TCGA-55-A494-01 10 119013816 119013816 G C SLC18A2 Intron 0.32 TCGA-55-A494-01 10 129921203 129921203 C G MKI67 Missense_Mutation p.D77H 0.22 deleterious(0) probably_damaging(0.974) TCGA-55-A494-01 10 26286167 26286167 G T MYO3A Missense_Mutation p.G163V 0.13 deleterious(0.03) possibly_damaging(0.876) TCGA-55-A494-01 10 35858171 35858171 G T CCNY 3'UTR 0.25 TCGA-55-A494-01 10 49381012 49381012 G A FRMPD2 Missense_Mutation p.S1067L 0.08 tolerated(0.16) benign(0.002) TCGA-55-A494-01 10 61413492 61413492 G T SLC16A9 Missense_Mutation p.A431D 0.51 deleterious(0) probably_damaging(0.999) TCGA-55-A494-01 10 95072838 95072838 T A MYOF Missense_Mutation p.Q1943L 0.57 deleterious(0.01) possibly_damaging(0.889) TCGA-55-A494-01 11 1006607 1006607 C T AP2A2 Silent p.D762D 0.15 TCGA-55-A494-01 11 101362389 101362389 G A TRPC6 Silent p.V342V 0.15 TCGA-55-A494-01 11 105836714 105836714 G A GRIA4 Intron 0.43 TCGA-55-A494-01 11 120099733 120099733 G A OAF Missense_Mutation p.R235H 0.27 deleterious(0.05) benign(0.109) TCGA-55-A494-01 11 120351075 120351095 GAATCCATCAGAAGGTGATGG - ARHGEF12 In_Frame_Del p.N1392_G1398del 0.16 TCGA-55-A494-01 11 120673433 120673433 C A GRIK4 Missense_Mutation p.S38R 0.14 tolerated(0.07) benign(0.298) TCGA-55-A494-01 11 20625835 20625835 G T SLC6A5 Missense_Mutation p.D182Y 0.41 deleterious(0) possibly_damaging(0.593) TCGA-55-A494-01 11 28090928 28090928 G A KIF18A Missense_Mutation p.R490C 0.21 tolerated(0.11) possibly_damaging(0.639) TCGA-55-A494-01 11 28090929 28090929 A G KIF18A Silent p.T489T 0.21 TCGA-55-A494-01 11 32636068 32636068 T C CCDC73 Missense_Mutation p.E599G 0.44 deleterious(0.01) possibly_damaging(0.57) TCGA-55-A494-01 11 33667355 33667355 G A KIAA1549L Missense_Mutation p.D1548N 0.27 deleterious(0.01) probably_damaging(0.991) TCGA-55-A494-01 11 44940814 44940814 A C TSPAN18 Missense_Mutation p.N128T 0.51 tolerated(0.15) benign(0.003) TCGA-55-A494-01 11 4824686 4824686 C A OR52R1 Nonsense_Mutation p.G309* 0.38 TCGA-55-A494-01 11 4825444 4825444 T C OR52R1 Missense_Mutation p.H56R 0.41 tolerated(0.28) benign(0.002) TCGA-55-A494-01 11 55111380 55111380 T G OR4A16 Missense_Mutation p.L235R 0.43 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-55-A494-01 11 55322384 55322384 C A OR4C15 Missense_Mutation p.A201D 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-A494-01 11 55578970 55578970 G A OR5L1 Missense_Mutation p.A10T 0.39 tolerated(1) benign(0.001) TCGA-55-A494-01 11 55681285 55681285 C T OR5W2 Missense_Mutation p.M258I 0.23 tolerated(0.09) benign(0.127) TCGA-55-A494-01 11 56185215 56185215 C T OR5R1 Missense_Mutation p.R165H 0.34 tolerated(0.49) benign(0.01) TCGA-55-A494-01 11 60689390 60689390 G T TMEM109 Missense_Mutation p.G162V 0.35 tolerated(0.16) probably_damaging(0.943) TCGA-55-A494-01 11 65270045 65270045 G A MALAT1 RNA 0.36 TCGA-55-A494-01 11 67072372 67072372 A G SSH3 Missense_Mutation p.Q78R 0.17 tolerated(0.08) benign(0.006) TCGA-55-A494-01 11 773533 773533 T A PDDC1 Missense_Mutation p.H115L 0.30 tolerated(0.66) benign(0.008) TCGA-55-A494-01 11 94197402 94197402 C A MRE11A Missense_Mutation p.D368Y 0.38 deleterious(0) probably_damaging(0.943) TCGA-55-A494-01 12 106480600 106480600 T C NUAK1 Missense_Mutation p.D142G 0.23 deleterious(0) probably_damaging(1) TCGA-55-A494-01 12 111733214 111733214 G T CUX2 Splice_Site p.X213_splice 0.13 TCGA-55-A494-01 12 11174555 11174555 G C TAS2R19 Missense_Mutation p.L206V 0.16 deleterious(0.02) possibly_damaging(0.665) TCGA-55-A494-01 12 112681680 112681680 C G HECTD4 Missense_Mutation p.Q1403H 0.54 benign(0.443) TCGA-55-A494-01 12 11286838 11286838 T G TAS2R30 Silent p.I2I 0.16 TCGA-55-A494-01 12 119583277 119583277 G A SRRM4 Missense_Mutation p.G288E 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-55-A494-01 12 124071432 124071432 A T TMED2 Missense_Mutation p.M107L 0.13 tolerated(0.15) benign(0.02) TCGA-55-A494-01 12 15654795 15654795 C A PTPRO Missense_Mutation p.D301E 0.15 tolerated_low_confidence(0.14) benign(0.001) TCGA-55-A494-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.75 deleterious(0) benign(0.361) TCGA-55-A494-01 12 27234205 27234205 T A C12orf71 Missense_Mutation p.T238S 0.15 tolerated(0.17) benign(0.31) TCGA-55-A494-01 12 27832957 27832957 C T PPFIBP1 Nonsense_Mutation p.R626* 0.18 TCGA-55-A494-01 12 29604292 29604292 T C OVCH1 Missense_Mutation p.K914R 0.35 tolerated(0.38) benign(0.013) TCGA-55-A494-01 12 3921231 3921231 C A PARP11 3'UTR 0.24 TCGA-55-A494-01 12 53345995 53345995 A C KRT18 Silent p.S347S 0.21 TCGA-55-A494-01 12 54970413 54970413 G T PDE1B Missense_Mutation p.V479F 0.56 tolerated(0.43) benign(0.037) TCGA-55-A494-01 12 80222203 80222203 T C PPP1R12A Missense_Mutation p.Y230C 0.24 tolerated(0.1) probably_damaging(0.979) TCGA-55-A494-01 13 101266616 101266616 C G TMTC4 Missense_Mutation p.E635D 0.44 tolerated(0.63) benign(0.002) TCGA-55-A494-01 13 20048088 20048088 G T TPTE2 Missense_Mutation p.L120I 0.39 deleterious(0.03) possibly_damaging(0.596) TCGA-55-A494-01 14 19378147 19378147 G T OR11H12 Missense_Mutation p.G185V 0.17 deleterious(0) probably_damaging(0.997) TCGA-55-A494-01 14 20502143 20502143 C T OR4K13 Missense_Mutation p.V259I 0.22 tolerated(0.36) benign(0.005) TCGA-55-A494-01 14 21867831 21867831 T C CHD8 Silent p.Q1617Q 0.16 TCGA-55-A494-01 14 23846531 23846531 C T CMTM5 Missense_Mutation p.A24V 0.25 tolerated(0.1) benign(0.435) TCGA-55-A494-01 14 23887490 23887490 C T MYH7 Silent p.S1366S 0.25 TCGA-55-A494-01 14 36783723 36783723 T C MBIP Missense_Mutation p.N189S 0.12 tolerated(0.13) benign(0.312) TCGA-55-A494-01 14 65208998 65208998 C A PLEKHG3 Silent p.R865R 0.24 TCGA-55-A494-01 14 65237697 65237697 T G SPTB Missense_Mutation p.T1902P 0.57 deleterious(0) probably_damaging(0.993) TCGA-55-A494-01 14 65253655 65253655 G C SPTB Missense_Mutation p.R1010G 0.54 deleterious(0) probably_damaging(0.975) TCGA-55-A494-01 14 79432654 79432654 C A NRXN3 Missense_Mutation p.H521Q 0.28 deleterious(0) probably_damaging(0.913) TCGA-55-A494-01 14 94155036 94155036 C A UNC79 Missense_Mutation p.P2174H 0.29 tolerated(0.12) probably_damaging(1) TCGA-55-A494-01 15 100332238 100332238 C T AC090825.1 5'Flank 0.44 TCGA-55-A494-01 15 100339851 100339851 C G DNM1P46 RNA 0.48 TCGA-55-A494-01 15 101589862 101589862 G A LRRK1 Missense_Mutation p.D1105N 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-55-A494-01 15 24922251 24922251 C A NPAP1 Missense_Mutation p.L413M 0.46 tolerated(0.11) possibly_damaging(0.862) TCGA-55-A494-01 15 64385863 64385863 C A FAM96A Missense_Mutation p.E35D 0.22 tolerated(0.25) benign(0.345) TCGA-55-A494-01 15 69339786 69339786 C T NOX5 Missense_Mutation p.R576C 0.49 deleterious(0) possibly_damaging(0.585) TCGA-55-A494-01 15 83932526 83932526 G T BNC1 Missense_Mutation p.R493S 0.30 deleterious(0.04) probably_damaging(0.998) TCGA-55-A494-01 15 83932773 83932773 G T BNC1 Missense_Mutation p.N410K 0.53 deleterious(0) probably_damaging(0.999) TCGA-55-A494-01 15 89453040 89453040 C T MFGE8 Missense_Mutation p.G63D 0.28 deleterious(0) probably_damaging(0.996) TCGA-55-A494-01 15 90168846 90168846 G C TICRR Missense_Mutation p.G1769R 0.31 deleterious(0) probably_damaging(0.998) TCGA-55-A494-01 15 92459521 92459521 G C SLCO3A1 Missense_Mutation p.G160A 0.58 tolerated(0.78) benign(0.007) TCGA-55-A494-01 16 31098019 31098019 G A PRSS53 Missense_Mutation p.P148L 0.52 deleterious(0.05) benign(0.059) TCGA-55-A494-01 16 51175458 51175458 G A SALL1 Silent p.A225A 0.52 TCGA-55-A494-01 16 56669707 56669707 C A MT1M 3'Flank 0.26 TCGA-55-A494-01 16 56913480 56913480 G A SLC12A3 Silent p.A454A 0.22 TCGA-55-A494-01 16 57062239 57062239 C T NLRC5 Nonsense_Mutation p.R729* 0.51 TCGA-55-A494-01 16 66949215 66949215 C T CDH16 Missense_Mutation p.R164Q 0.14 tolerated(0.06) benign(0.379) TCGA-55-A494-01 16 67231937 67231937 C T E2F4 Missense_Mutation p.P385S 0.25 deleterious(0) benign(0.04) TCGA-55-A494-01 16 67995580 67995580 C G SLC12A4 Silent p.S82S 0.05 TCGA-55-A494-01 16 70806138 70806138 C A VAC14 Intron 0.54 TCGA-55-A494-01 16 70806139 70806139 C A VAC14 Intron 0.54 TCGA-55-A494-01 16 84215048 84215048 G T TAF1C Missense_Mutation p.D376E 0.35 tolerated(0.25) probably_damaging(0.931) TCGA-55-A494-01 16 8862113 8862113 G T ABAT Missense_Mutation p.G223C 0.25 deleterious(0) probably_damaging(0.981) TCGA-55-A494-01 17 10354109 10354109 T C MYH4 Silent p.L1323L 0.55 TCGA-55-A494-01 17 10542911 10542911 T A MYH3 Missense_Mutation p.K964M 0.29 deleterious(0) possibly_damaging(0.84) TCGA-55-A494-01 17 34881083 34881083 G A MYO19 Silent p.V130V 0.38 TCGA-55-A494-01 17 38818214 38818214 C T KRT222 Missense_Mutation p.R60H 0.21 deleterious(0) probably_damaging(0.999) TCGA-55-A494-01 17 44060626 44060626 C T MAPT Silent p.G152G 0.14 TCGA-55-A494-01 17 47237990 47237990 C T B4GALNT2 Silent p.Y311Y 0.20 TCGA-55-A494-01 17 49708800 49708800 C A CA10 3'UTR 0.56 TCGA-55-A494-01 17 72608825 72608825 C T CD300E Silent p.V195V 0.27 TCGA-55-A494-01 18 14757935 14757935 G T ANKRD30B Missense_Mutation p.A247S 0.15 tolerated(0.08) benign(0.311) TCGA-55-A494-01 18 47101931 47101931 A T LIPG Missense_Mutation p.N255I 0.10 tolerated(0.41) possibly_damaging(0.694) TCGA-55-A494-01 18 61170809 61170809 G C SERPINB5 Missense_Mutation p.E328Q 0.18 deleterious(0) probably_damaging(1) TCGA-55-A494-01 18 61309061 61309061 G T SERPINB4 Missense_Mutation p.S95Y 0.24 tolerated(0.05) possibly_damaging(0.696) TCGA-55-A494-01 18 61378608 61378608 G T SERPINB11 Missense_Mutation p.G70W 0.11 deleterious(0.01) possibly_damaging(0.575) TCGA-55-A494-01 19 22605117 22605117 C A ZNF98 5'UTR 0.80 TCGA-55-A494-01 19 31767880 31767880 C A TSHZ3 Missense_Mutation p.G940V 0.62 deleterious(0) probably_damaging(0.989) TCGA-55-A494-01 19 37676265 37676265 T G ZNF585B Missense_Mutation p.K725T 0.27 deleterious(0) probably_damaging(0.999) TCGA-55-A494-01 19 3984259 3984259 G A EEF2 Silent p.G31G 0.41 TCGA-55-A494-01 19 41092698 41092698 T A SHKBP1 Missense_Mutation p.I395N 0.25 deleterious(0) benign(0.044) TCGA-55-A494-01 19 41600882 41600882 A G CYP2A13 Missense_Mutation p.M394V 0.04 tolerated(0.62) benign(0.04) TCGA-55-A494-01 19 44127413 44127413 G C CADM4 3'UTR 0.27 TCGA-55-A494-01 19 44469181 44469181 T A ZNF221 Missense_Mutation p.L54Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-55-A494-01 19 44981388 44981388 T A ZNF180 Missense_Mutation p.Y437F 0.28 tolerated(0.06) probably_damaging(0.999) TCGA-55-A494-01 19 46443987 46443987 G - NOVA2 Frame_Shift_Del p.Q205Rfs*191 0.18 TCGA-55-A494-01 19 50250707 50250707 C A TSKS Missense_Mutation p.R201L 0.23 deleterious(0.04) possibly_damaging(0.464) TCGA-55-A494-01 19 51021868 51021868 C A LRRC4B Nonsense_Mutation p.E368* 0.18 TCGA-55-A494-01 19 55144616 55144616 A C LILRB1 Silent p.R370R 0.22 TCGA-55-A494-01 19 56423403 56423403 T A NLRP13 Nonsense_Mutation p.K594* 0.63 TCGA-55-A494-01 19 58571516 58571516 C A ZNF135 Intron 0.60 TCGA-55-A494-01 19 9088239 9088239 C A MUC16 Missense_Mutation p.M1192I 0.83 unknown(0) TCGA-55-A494-01 1 114225728 114225728 G T MAGI3 Nonsense_Mutation p.E1180* 0.56 TCGA-55-A494-01 1 115222998 115222998 C T AMPD1 Missense_Mutation p.V250I 0.43 tolerated(0.21) benign(0) TCGA-55-A494-01 1 12939821 12939821 G T PRAMEF4 Silent p.T327T 0.33 TCGA-55-A494-01 1 12942115 12942115 T C PRAMEF4 Silent p.G145G 0.07 TCGA-55-A494-01 1 151955441 151955441 A G S100A10 3'UTR 0.12 TCGA-55-A494-01 1 152275965 152275965 G T FLG Silent p.A3799A 0.36 TCGA-55-A494-01 1 161599796 161599796 C A FCGR3B Nonsense_Mutation p.E67* 0.49 TCGA-55-A494-01 1 167023628 167023628 G T GPA33 Nonsense_Mutation p.Y301* 0.32 TCGA-55-A494-01 1 175066815 175066815 G A TNN Silent p.P617P 0.21 TCGA-55-A494-01 1 176564660 176564660 C T PAPPA2 Silent p.D640D 0.15 TCGA-55-A494-01 1 182026755 182026755 C T ZNF648 Missense_Mutation p.A131T 0.17 tolerated(0.32) benign(0.001) TCGA-55-A494-01 1 186022957 186022957 G T HMCN1 Missense_Mutation p.G2234V 0.47 benign(0.024) TCGA-55-A494-01 1 190423912 190423912 C G BRINP3 Missense_Mutation p.D37H 0.44 tolerated(0.06) benign(0.03) TCGA-55-A494-01 1 196227460 196227460 G T KCNT2 Silent p.G1025G 0.33 TCGA-55-A494-01 1 228481085 228481085 G T OBSCN Missense_Mutation p.R4062S 0.41 benign(0.072) TCGA-55-A494-01 1 247921285 247921285 C A OR1C1 Missense_Mutation p.V142F 0.44 tolerated(0.12) benign(0.348) TCGA-55-A494-01 1 248616419 248616419 C A OR2T2 Silent p.T107T 0.17 TCGA-55-A494-01 1 32049124 32049124 G A TINAGL1 Missense_Mutation p.R177H 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-55-A494-01 1 75626731 75626731 G T LHX8 3'UTR 0.20 TCGA-55-A494-01 1 75626732 75626732 G T LHX8 3'UTR 0.20 TCGA-55-A494-01 1 75805309 75805309 G T SLC44A5 Missense_Mutation p.P20Q 0.54 deleterious(0) possibly_damaging(0.792) TCGA-55-A494-01 1 75805310 75805310 G T SLC44A5 Missense_Mutation p.P20T 0.54 deleterious(0) possibly_damaging(0.492) TCGA-55-A494-01 1 79128476 79128476 G T IFI44 Missense_Mutation p.V401L 0.55 tolerated(0.97) benign(0.006) TCGA-55-A494-01 20 16506809 16506809 G C KIF16B Silent p.T53T 0.13 TCGA-55-A494-01 20 21492602 21492602 T G NKX2-2 Missense_Mutation p.T261P 0.23 tolerated(0.08) benign(0.216) TCGA-55-A494-01 20 3016330 3016330 C T PTPRA Nonsense_Mutation p.R674* 0.28 TCGA-55-A494-01 20 419307 419314 GTGCCACT - TBC1D20 Frame_Shift_Del p.V377Wfs*17 0.37 TCGA-55-A494-01 20 43739178 43739178 T A WFDC5 Missense_Mutation p.K77M 0.58 deleterious(0) probably_damaging(1) TCGA-55-A494-01 20 43964523 43964523 A G SDC4 Missense_Mutation p.L33P 0.61 deleterious(0.01) probably_damaging(0.954) TCGA-55-A494-01 20 57484610 57484610 C T GNAS Missense_Mutation p.R875C 0.40 deleterious(0) probably_damaging(0.999) TCGA-55-A494-01 20 62521267 62521267 A T TPD52L2 Missense_Mutation p.D220V 0.39 deleterious(0) possibly_damaging(0.474) TCGA-55-A494-01 21 10920092 10920092 G C TPTE Missense_Mutation p.P388A 0.23 deleterious(0.04) benign(0.32) TCGA-55-A494-01 21 14982696 14982696 C T POTED Silent p.H49H 0.13 TCGA-55-A494-01 22 19754415 19754415 C T TBX1 3'UTR 0.22 TCGA-55-A494-01 22 25334190 25334190 G T TMEM211 Missense_Mutation p.S18Y 0.18 deleterious(0) probably_damaging(0.989) TCGA-55-A494-01 22 29935324 29935324 C A THOC5 Silent p.R198R 0.31 TCGA-55-A494-01 22 45221402 45221402 G A ARHGAP8 Silent p.T297T 0.25 TCGA-55-A494-01 2 100171148 100171148 C T AFF3 Missense_Mutation p.G1136E 0.24 deleterious(0) probably_damaging(0.988) TCGA-55-A494-01 2 131356279 131356279 C G CFC1 Silent p.V61V 0.35 TCGA-55-A494-01 2 132287275 132287275 G T CCDC74A Intron 0.66 TCGA-55-A494-01 2 132288322 132288322 A C CCDC74A Missense_Mutation p.S156R 0.39 deleterious(0.03) benign(0.096) TCGA-55-A494-01 2 137814631 137814631 C A THSD7B Missense_Mutation p.P261T 0.69 tolerated(0.67) probably_damaging(0.994) TCGA-55-A494-01 2 141201926 141201926 C A LRP1B Missense_Mutation p.G3423C 0.13 probably_damaging(0.991) TCGA-55-A494-01 2 141806769 141806769 G A LRP1B Silent p.L525L 0.19 TCGA-55-A494-01 2 155566332 155566332 G C KCNJ3 Splice_Site p.X307_splice 0.61 TCGA-55-A494-01 2 171854230 171854230 C T TLK1 Missense_Mutation p.G670S 0.14 deleterious(0) probably_damaging(0.993) TCGA-55-A494-01 2 172967031 172967031 C G DLX2 Missense_Mutation p.G79A 0.69 tolerated(0.68) benign(0.009) TCGA-55-A494-01 2 175436603 175436603 C G WIPF1 Silent p.P310P 0.25 TCGA-55-A494-01 2 179404546 179404546 G T TTN Missense_Mutation p.A32749D 0.64 TCGA-55-A494-01 2 179430399 179430399 C A TTN Missense_Mutation p.Q26820H 0.19 TCGA-55-A494-01 2 191926496 191926496 C A STAT4 Silent p.P331P 0.17 TCGA-55-A494-01 2 206659768 206659768 T C NRP2 Missense_Mutation p.C928R 0.13 tolerated(0.06) probably_damaging(0.952) TCGA-55-A494-01 2 206659769 206659769 G T NRP2 Missense_Mutation p.C928F 0.13 tolerated(0.98) possibly_damaging(0.907) TCGA-55-A494-01 2 208988855 208988855 G T CRYGD Missense_Mutation p.S78Y 0.16 deleterious(0) probably_damaging(0.997) TCGA-55-A494-01 2 219679764 219679764 C T CYP27A1 3'UTR 0.19 TCGA-55-A494-01 2 229890215 229890215 C A PID1 3'UTR 0.78 TCGA-55-A494-01 2 239040087 239040087 G T ESPNL Missense_Mutation p.G911V 0.18 deleterious(0) probably_damaging(0.999) TCGA-55-A494-01 2 240960828 240960828 G A NDUFA10 Silent p.G82G 0.20 TCGA-55-A494-01 2 37035897 37035897 C A VIT Missense_Mutation p.Q558K 0.33 deleterious(0) probably_damaging(0.99) TCGA-55-A494-01 2 60688743 60688743 G A BCL11A Missense_Mutation p.T435M 0.14 deleterious(0.01) possibly_damaging(0.791) TCGA-55-A494-01 2 79313500 79313500 G T REG1B Missense_Mutation p.P105Q 0.53 deleterious(0) probably_damaging(0.929) TCGA-55-A494-01 2 84517838 84517838 C A FUNDC2P2 RNA 0.36 TCGA-55-A494-01 2 98732114 98732114 G T VWA3B Splice_Site p.X66_splice 0.19 TCGA-55-A494-01 3 102175172 102175172 T A ZPLD1 Missense_Mutation p.C171S 0.26 deleterious(0) probably_damaging(1) TCGA-55-A494-01 3 124438299 124438299 G T RP11-71H17.7 5'Flank 0.42 TCGA-55-A494-01 3 126181048 126181048 A G ZXDC Missense_Mutation p.L486P 0.54 deleterious(0.01) benign(0.113) TCGA-55-A494-01 3 132169517 132169517 G T DNAJC13 Missense_Mutation p.W121C 0.27 deleterious(0) probably_damaging(0.984) TCGA-55-A494-01 3 142567066 142567066 G C PCOLCE2 Missense_Mutation p.N147K 0.28 deleterious(0.03) benign(0.081) TCGA-55-A494-01 3 170625555 170625555 G T EIF5A2 Missense_Mutation p.A14D 0.25 deleterious(0) probably_damaging(0.988) TCGA-55-A494-01 3 40231369 40231369 T C MYRIP Silent p.D360D 0.57 TCGA-55-A494-01 3 48630794 48630794 G T COL7A1 Missense_Mutation p.A172D 0.49 unknown(0) TCGA-55-A494-01 3 54930918 54930918 C T CACNA2D3 Intron 0.30 TCGA-55-A494-01 3 77651607 77651607 G T ROBO2 Missense_Mutation p.G1050V 0.25 deleterious(0.01) probably_damaging(0.953) TCGA-55-A494-01 3 97720489 97720489 G T GABRR3 RNA 0.20 TCGA-55-A494-01 4 114278461 114278461 C A ANK2 Missense_Mutation p.S2896Y 0.53 benign(0.012) TCGA-55-A494-01 4 122739316 122739316 C T CCNA2 Missense_Mutation p.R378Q 0.07 tolerated(0.68) benign(0.001) TCGA-55-A494-01 4 159076892 159076892 C T FAM198B Nonsense_Mutation p.W340* 0.31 TCGA-55-A494-01 4 165961462 165961462 C A TRIM60 Missense_Mutation p.Q80K 0.52 tolerated(0.29) benign(0.007) TCGA-55-A494-01 4 55955126 55955126 A T KDR Missense_Mutation p.L1140Q 0.20 deleterious(0.02) probably_damaging(1) TCGA-55-A494-01 4 66217219 66217219 C A EPHA5 Missense_Mutation p.R799I 0.52 deleterious(0.01) probably_damaging(1) TCGA-55-A494-01 4 69101961 69101961 C A TMPRSS11B Missense_Mutation p.D50Y 0.47 deleterious(0.01) possibly_damaging(0.694) TCGA-55-A494-01 4 88535152 88535152 T C DSPP Silent p.N446N 0.64 TCGA-55-A494-01 4 94376957 94376957 C A GRID2 Missense_Mutation p.P564T 0.43 deleterious(0) probably_damaging(1) TCGA-55-A494-01 5 140532282 140532282 T C PCDHB6 3'UTR 0.30 TCGA-55-A494-01 5 141035760 141035760 C T ARAP3 Splice_Site p.X1291_splice 0.18 TCGA-55-A494-01 5 15937088 15937088 G T FBXL7 Silent p.L423L 0.22 TCGA-55-A494-01 5 175998229 175998229 C A CDHR2 Missense_Mutation p.L111M 0.21 tolerated(0.24) benign(0.163) TCGA-55-A494-01 5 176522377 176522377 G T FGFR4 Missense_Mutation p.E522D 0.19 deleterious(0) probably_damaging(0.986) TCGA-55-A494-01 5 19571779 19571779 A T CDH18 Missense_Mutation p.Y388N 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-55-A494-01 5 19571780 19571780 G A CDH18 Silent p.S387S 0.17 TCGA-55-A494-01 5 21752203 21752203 C A CDH12 Silent p.G676G 0.25 TCGA-55-A494-01 5 23521184 23521184 G T PRDM9 Missense_Mutation p.R135I 0.20 deleterious_low_confidence(0.02) benign(0.001) TCGA-55-A494-01 5 38438444 38438444 C A EGFLAM Missense_Mutation p.A784E 0.11 deleterious(0.01) possibly_damaging(0.895) TCGA-55-A494-01 6 12124184 12124184 A T HIVEP1 Nonsense_Mutation p.K1386* 0.23 TCGA-55-A494-01 6 128134054 128134054 T C THEMIS Missense_Mutation p.T578A 0.70 tolerated(0.38) benign(0.003) TCGA-55-A494-01 6 135769452 135769452 T A AHI1 Silent p.V534V 0.62 TCGA-55-A494-01 6 152652437 152652437 T A SYNE1 Silent p.A4461A 0.76 TCGA-55-A494-01 6 26189028 26189028 G T HIST1H4D Missense_Mutation p.R93S 0.43 deleterious(0) probably_damaging(0.994) TCGA-55-A494-01 6 26197137 26197137 G A HIST1H3D Silent p.H114H 0.21 TCGA-55-A494-01 6 28093240 28093240 C - ZSCAN16 Frame_Shift_Del p.P7Lfs*8 0.12 TCGA-55-A494-01 6 32188244 32188244 G T NOTCH4 Missense_Mutation p.P366Q 0.47 tolerated(0.36) benign(0.141) TCGA-55-A494-01 6 33281854 33281856 TCC - TAPBP 5'UTR 0.31 TCGA-55-A494-01 6 39545895 39545895 T A KIF6 Missense_Mutation p.D373V 0.14 deleterious(0.02) benign(0.013) TCGA-55-A494-01 6 39682526 39682526 C A KIF6 Missense_Mutation p.D65Y 0.11 deleterious(0) probably_damaging(0.992) TCGA-55-A494-01 6 41196206 41196206 G T TREML4 Missense_Mutation p.C14F 0.13 tolerated_low_confidence(0.1) benign(0.146) TCGA-55-A494-01 6 70972972 70972972 C A COL9A1 Missense_Mutation p.G457V 0.80 probably_damaging(1) TCGA-55-A494-01 6 7370162 7370162 A T CAGE1 Missense_Mutation p.L628H 0.49 deleterious(0) probably_damaging(0.993) TCGA-55-A494-01 6 8430143 8430143 C A SLC35B3 Missense_Mutation p.C84F 0.54 deleterious(0) probably_damaging(0.979) TCGA-55-A494-01 6 87993919 87993919 C T GJB7 3'UTR 0.26 TCGA-55-A494-01 6 87993960 87993960 C G GJB7 Nonstop_Mutation p.*224Sext*8 0.42 TCGA-55-A494-01 6 87994037 87994037 C T GJB7 Silent p.L198L 0.34 TCGA-55-A494-01 6 87994435 87994435 C G GJB7 Missense_Mutation p.D66H 0.42 deleterious(0) probably_damaging(0.996) TCGA-55-A494-01 6 87994477 87994477 C G GJB7 Missense_Mutation p.E52Q 0.47 tolerated(0.55) benign(0.175) TCGA-55-A494-01 6 87994628 87994628 C G GJB7 Translation_Start_Site p.M1? 0.31 deleterious(0) probably_damaging(0.991) TCGA-55-A494-01 6 99284091 99284091 G - POU3F2 3'UTR 0.27 TCGA-55-A494-01 7 100683222 100683222 C A MUC17 Missense_Mutation p.T2842N 0.50 unknown(0) TCGA-55-A494-01 7 120381601 120381601 C A KCND2 Missense_Mutation p.A431D 0.11 deleterious(0) possibly_damaging(0.703) TCGA-55-A494-01 7 128850937 128850937 C T SMO Missense_Mutation p.S595F 0.18 deleterious(0) possibly_damaging(0.866) TCGA-55-A494-01 7 137330263 137330263 C G DGKI Missense_Mutation p.W253C 0.29 deleterious(0) probably_damaging(1) TCGA-55-A494-01 7 137330264 137330264 C A DGKI Missense_Mutation p.W253L 0.29 deleterious(0) probably_damaging(0.999) TCGA-55-A494-01 7 142168635 142168635 G T TRBV5-4 Missense_Mutation p.L30M 0.06 deleterious(0.04) probably_damaging(0.945) TCGA-55-A494-01 7 142498805 142498805 A T TRBC2 Missense_Mutation p.T28S 0.08 deleterious(0) possibly_damaging(0.503) TCGA-55-A494-01 7 143826870 143826870 C G OR2A14 Missense_Mutation p.A222G 0.36 tolerated(0.4) benign(0.006) TCGA-55-A494-01 7 143826871 143826871 C A OR2A14 Silent p.A222A 0.36 TCGA-55-A494-01 7 149419567 149419567 G T KRBA1 Missense_Mutation p.G174V 0.29 tolerated(0.19) possibly_damaging(0.682) TCGA-55-A494-01 7 149516410 149516410 C A SSPO RNA 0.48 TCGA-55-A494-01 7 27147616 27147616 G A HOXA3 Missense_Mutation p.P417L 0.17 deleterious(0) probably_damaging(0.977) TCGA-55-A494-01 7 6797490 6797490 G T RSPH10B2 Missense_Mutation p.R61L 0.35 tolerated(0.33) benign(0) TCGA-55-A494-01 7 86468862 86468862 C A GRM3 Missense_Mutation p.Q678K 0.20 tolerated(0.93) possibly_damaging(0.685) TCGA-55-A494-01 7 87160635 87160635 T A ABCB1 Missense_Mutation p.K887M 0.51 deleterious(0) possibly_damaging(0.618) TCGA-55-A494-01 8 110457684 110457684 A C PKHD1L1 Silent p.T1862T 0.78 TCGA-55-A494-01 8 121535540 121535540 G T MTBP Silent p.V893V 0.15 TCGA-55-A494-01 8 133900692 133900692 G T TG Silent p.P880P 0.17 TCGA-55-A494-01 8 145649155 145649155 C A VPS28 3'UTR 0.79 TCGA-55-A494-01 8 42037883 42037883 G T PLAT Missense_Mutation p.H367N 0.76 tolerated(0.57) benign(0.01) TCGA-55-A494-01 8 51617197 51617197 C A SNTG1 Missense_Mutation p.T359N 0.07 tolerated(0.08) benign(0.028) TCGA-55-A494-01 8 99440315 99440315 G A KCNS2 Silent p.L36L 0.16 TCGA-55-A494-01 9 103064573 103064573 C T TEX10 Missense_Mutation p.G897E 0.25 deleterious(0.01) possibly_damaging(0.768) TCGA-55-A494-01 9 125140709 125140709 C A PTGS1 Intron 0.26 TCGA-55-A494-01 9 125680984 125680984 C A ZBTB26 Silent p.G410G 0.44 TCGA-55-A494-01 9 138590208 138590208 G A SOHLH1 Silent p.A104A 0.46 TCGA-55-A494-01 9 39888268 39888268 C T SPATA31A2 Missense_Mutation p.L419F 0.62 deleterious(0) probably_damaging(0.934) TCGA-55-A494-01 9 74329985 74329985 T C TMEM2 Missense_Mutation p.D819G 0.09 deleterious(0) probably_damaging(0.982) TCGA-55-A494-01 9 84532638 84532638 C A SPATA31D5P RNA 0.29 TCGA-55-A494-01 9 95838183 95838183 G T SUSD3 Missense_Mutation p.G69V 0.40 deleterious(0) probably_damaging(1) TCGA-55-A494-01 X 100667714 100667714 T A HNRNPH2 Nonsense_Mutation p.Y246* 0.45 TCGA-55-A494-01 X 101092603 101092603 G T NXF5 Missense_Mutation p.H315N 0.41 deleterious(0.02) benign(0.056) TCGA-55-A494-01 X 102755546 102755546 C G RAB40A Missense_Mutation p.G47R 0.37 tolerated(0.34) benign(0.002) TCGA-55-A494-01 X 106016273 106016273 C A RNF128 Missense_Mutation p.H205Q 0.36 tolerated(0.26) benign(0.018) TCGA-55-A494-01 X 118109183 118109183 C A LONRF3 Missense_Mutation p.A147E 0.55 tolerated(0.26) possibly_damaging(0.786) TCGA-55-A494-01 X 119388142 119388142 C A ZBTB33 Missense_Mutation p.P291Q 0.40 tolerated(0.22) benign(0.005) TCGA-55-A494-01 X 119760949 119760949 G T C1GALT1C1 Missense_Mutation p.L25I 0.15 tolerated(0.08) benign(0.073) TCGA-55-A494-01 X 120009288 120009288 C A CT47B1 Silent p.G79G 0.45 TCGA-55-A494-01 X 120009289 120009289 C G CT47B1 Missense_Mutation p.G79A 0.44 tolerated(0.46) possibly_damaging(0.838) TCGA-55-A494-01 X 127185847 127185847 C A ACTRT1 Missense_Mutation p.L113F 0.19 deleterious(0.01) benign(0.225) TCGA-55-A494-01 X 129159250 129159250 G A BCORL1 Missense_Mutation p.G1325D 0.31 probably_damaging(0.972) TCGA-55-A494-01 X 129264009 129264009 C A AIFM1 Missense_Mutation p.R569M 0.43 deleterious(0) possibly_damaging(0.856) TCGA-55-A494-01 X 134420970 134420970 C - ZNF75D 3'UTR 0.29 TCGA-55-A494-01 X 142605299 142605299 G A SPANXN3 5'UTR 0.39 TCGA-55-A494-01 X 147582565 147582565 C A AFF2 5'UTR 0.44 TCGA-55-A494-01 X 148055116 148055116 C A AFF2 Missense_Mutation p.S1128Y 0.44 deleterious(0) possibly_damaging(0.701) TCGA-55-A494-01 X 149919533 149919533 G C MTMR1 Intron 0.37 TCGA-55-A494-01 X 151092388 151092388 C A MAGEA4 Silent p.P84P 0.43 TCGA-55-A494-01 X 153744153 153744153 C A FAM3A 5'UTR 0.38 TCGA-55-A494-01 X 154225368 154225368 G A F8 Silent p.L90L 0.35 TCGA-55-A494-01 X 1718125 1718126 AG - AKAP17A Frame_Shift_Del p.E319Rfs*14 0.12 TCGA-55-A494-01 X 18198677 18198677 C A BEND2 Missense_Mutation p.S461I 0.38 deleterious(0) possibly_damaging(0.898) TCGA-55-A494-01 X 18942173 18942173 C - PHKA2 Splice_Site p.X598_splice 0.26 TCGA-55-A494-01 X 21675867 21675867 C T KLHL34 Missense_Mutation p.A14T 0.14 tolerated(0.31) benign(0.003) TCGA-55-A494-01 X 22291911 22291911 C A ZNF645 Missense_Mutation p.A268E 0.36 tolerated(0.06) benign(0.058) TCGA-55-A494-01 X 26212174 26212174 G T MAGEB6 Missense_Mutation p.G71W 0.43 deleterious(0.01) probably_damaging(0.933) TCGA-55-A494-01 X 2933193 2933193 G C ARSH Missense_Mutation p.A175P 0.38 deleterious(0.01) possibly_damaging(0.781) TCGA-55-A494-01 X 30269393 30269393 C T MAGEB1 Silent p.P261P 0.45 TCGA-55-A494-01 X 33146325 33146325 C A DMD Intron 0.19 TCGA-55-A494-01 X 48663929 48663929 G C HDAC6 Missense_Mutation p.Q132H 0.16 deleterious(0.05) benign(0.111) TCGA-55-A494-01 X 49040253 49040253 G A PRICKLE3 Silent p.S82S 0.31 TCGA-55-A494-01 X 50052923 50052923 C A CCNB3 Nonsense_Mutation p.S585* 0.18 TCGA-55-A494-01 X 53436075 53436075 C T SMC1A Missense_Mutation p.R488H 0.20 deleterious(0.05) probably_damaging(0.973) TCGA-55-A494-01 X 65417597 65417597 C G HEPH Missense_Mutation p.A579G 0.30 tolerated(0.22) probably_damaging(0.963) TCGA-55-A494-01 X 69649393 69649393 G T GDPD2 Missense_Mutation p.E329D 0.34 tolerated(0.15) benign(0.104) TCGA-55-A494-01 X 70345277 70345277 G C MED12 Missense_Mutation p.R768P 0.39 probably_damaging(0.988) TCGA-55-A494-01 X 70389160 70389160 G A NLGN3 Missense_Mutation p.R587H 0.11 deleterious(0) probably_damaging(0.999) TCGA-55-A494-01 X 70838302 70838302 C A CXCR3 5'UTR 0.39 TCGA-55-A494-01 X 73046540 73046540 G T XIST RNA 0.37 TCGA-55-A494-01 X 75003415 75003415 C T MAGEE2 Missense_Mutation p.R491Q 0.23 tolerated(0.05) benign(0.001) TCGA-55-A494-01 X 75649328 75649328 C A MAGEE1 Silent p.T335T 0.32 TCGA-55-A494-01 X 77913876 77913876 C A ZCCHC5 Missense_Mutation p.L14F 0.47 tolerated_low_confidence(0.08) benign(0.187) TCGA-55-A494-01 X 7870030 7870030 C A PNPLA4 Missense_Mutation p.M210I 0.41 tolerated(0.46) benign(0.027) TCGA-55-A494-01 X 82763551 82763551 C T POU3F4 Silent p.T73T 0.15 TCGA-55-A494-01 X 84363131 84363131 T G SATL1 Missense_Mutation p.S282R 0.17 tolerated(0.25) possibly_damaging(0.801) TCGA-55-A4DF-01 10 104165178 104165178 G A PSD Missense_Mutation p.P751S 0.05 tolerated(0.09) possibly_damaging(0.777) TCGA-55-A4DF-01 10 104176227 104176227 G T PSD Missense_Mutation p.S190Y 0.14 deleterious_low_confidence(0.01) benign(0.34) TCGA-55-A4DF-01 10 112039780 112039780 G C MXI1 Missense_Mutation p.E221Q 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-55-A4DF-01 10 113919791 113919791 G C GPAM Missense_Mutation p.L594V 0.17 tolerated(0.35) benign(0.001) TCGA-55-A4DF-01 10 115380468 115380468 C T NRAP Splice_Site p.X924_splice 0.22 TCGA-55-A4DF-01 10 115413803 115413803 C G NRAP Missense_Mutation p.E148Q 0.18 tolerated(0.66) benign(0.011) TCGA-55-A4DF-01 10 11997368 11997368 C A UPF2 Missense_Mutation p.G905C 0.19 deleterious(0.03) possibly_damaging(0.487) TCGA-55-A4DF-01 10 120833071 120833071 C G EIF3A Missense_Mutation p.E87Q 0.13 deleterious(0) unknown(0) TCGA-55-A4DF-01 10 12123626 12123626 G C DHTKD1 Missense_Mutation p.G104R 0.17 deleterious(0.01) probably_damaging(0.925) TCGA-55-A4DF-01 10 12131021 12131021 C T DHTKD1 Missense_Mutation p.P252S 0.10 tolerated(0.07) possibly_damaging(0.893) TCGA-55-A4DF-01 10 12209866 12209866 C G NUDT5 Intron 0.22 TCGA-55-A4DF-01 10 124378829 124378829 C T DMBT1 Nonsense_Mutation p.Q1612* 0.24 TCGA-55-A4DF-01 10 129906516 129906516 C T MKI67 Silent p.Q1196Q 0.11 TCGA-55-A4DF-01 10 129906712 129906712 G C MKI67 Missense_Mutation p.S1131C 0.20 deleterious(0.01) probably_damaging(0.954) TCGA-55-A4DF-01 10 134916293 134916293 C A GPR123 Silent p.A116A 0.09 TCGA-55-A4DF-01 10 135053643 135053643 G T VENTX Missense_Mutation p.G204C 0.31 deleterious(0) possibly_damaging(0.841) TCGA-55-A4DF-01 10 135122932 135122932 G T ZNF511 Silent p.V64V 0.23 TCGA-55-A4DF-01 10 135346333 135346333 C T CYP2E1 Silent p.P262P 0.21 TCGA-55-A4DF-01 10 15326047 15326047 G A FAM171A1 Missense_Mutation p.A52V 0.31 tolerated(0.1) benign(0.088) TCGA-55-A4DF-01 10 22617985 22617985 C T BMI1 Silent p.V193V 0.27 TCGA-55-A4DF-01 10 22700085 22700085 T C SPAG6 Silent p.C480C 0.20 TCGA-55-A4DF-01 10 25886704 25886704 G T GPR158 Nonsense_Mutation p.E717* 0.32 TCGA-55-A4DF-01 10 27149810 27149810 C G ABI1 5'UTR 0.15 TCGA-55-A4DF-01 10 28233166 28233166 C T ARMC4 Silent p.G576G 0.32 TCGA-55-A4DF-01 10 32150438 32150438 G A ARHGAP12 Missense_Mutation p.S278L 0.11 deleterious(0.02) benign(0.012) TCGA-55-A4DF-01 10 37508735 37508735 C G ANKRD30A Silent p.L1309L 0.16 TCGA-55-A4DF-01 10 38305895 38305895 C T ZNF33A Silent p.L36L 0.15 TCGA-55-A4DF-01 10 49633978 49633978 C G MAPK8 Missense_Mutation p.P246A 0.11 tolerated(0.72) benign(0.001) TCGA-55-A4DF-01 10 53458392 53458392 C A CSTF2T Missense_Mutation p.Q306H 0.11 tolerated(0.12) possibly_damaging(0.556) TCGA-55-A4DF-01 10 61554234 61554234 G C CCDC6 Missense_Mutation p.I409M 0.39 tolerated(0.11) benign(0.052) TCGA-55-A4DF-01 10 64136115 64136115 G A ZNF365 Missense_Mutation p.E55K 0.31 tolerated_low_confidence(0.09) probably_damaging(0.919) TCGA-55-A4DF-01 10 67726407 67726407 T G CTNNA3 Missense_Mutation p.E788A 0.19 deleterious(0.01) unknown(0) TCGA-55-A4DF-01 10 68686965 68686965 C G LRRTM3 Missense_Mutation p.I97M 0.19 deleterious(0) probably_damaging(0.996) TCGA-55-A4DF-01 10 70136838 70136838 G C RUFY2 Intron 0.21 TCGA-55-A4DF-01 10 70968671 70968671 G C SUPV3L1 Missense_Mutation p.M747I 0.16 tolerated(0.12) benign(0.005) TCGA-55-A4DF-01 10 71021021 71021021 C T HKDC1 Silent p.F781F 0.25 TCGA-55-A4DF-01 10 76803613 76803613 G T DUPD1 Silent p.L121L 0.27 TCGA-55-A4DF-01 10 7801912 7801912 C G KIN Missense_Mutation p.E354Q 0.22 tolerated(0.44) benign(0.121) TCGA-55-A4DF-01 10 8100741 8100741 C T GATA3 Silent p.L239L 0.14 TCGA-55-A4DF-01 10 81050910 81050910 C T ZMIZ1 Silent p.P245P 0.18 TCGA-55-A4DF-01 10 8115846 8115846 A T GATA3 Nonsense_Mutation p.R399* 0.29 TCGA-55-A4DF-01 10 85984612 85984612 G A LRIT2 Silent p.F123F 0.15 TCGA-55-A4DF-01 10 88696636 88696636 C A MMRN2 Missense_Mutation p.G905V 0.19 deleterious(0) possibly_damaging(0.589) TCGA-55-A4DF-01 10 96805586 96805586 C A CYP2C8 Silent p.L314L 0.15 TCGA-55-A4DF-01 10 97380818 97380818 G A ALDH18A1 Silent p.I479I 0.12 TCGA-55-A4DF-01 11 102742642 102742642 C A MMP12 RNA 0.39 TCGA-55-A4DF-01 11 107205616 107205616 G C CWF19L2 Missense_Mutation p.I810M 0.26 deleterious(0) probably_damaging(0.979) TCGA-55-A4DF-01 11 1087943 1087943 C T MUC2 Missense_Mutation p.R1140W 0.29 probably_damaging(0.965) TCGA-55-A4DF-01 11 1103569 1103569 C G MUC2 Missense_Mutation p.F2694L 0.30 unknown(0) TCGA-55-A4DF-01 11 111156778 111156778 G C C11orf53 Nonstop_Mutation p.*237Sext*49 0.17 TCGA-55-A4DF-01 11 1162291 1162291 C A MUC5AC Missense_Mutation p.F600L 0.24 deleterious(0) benign(0.105) TCGA-55-A4DF-01 11 118183531 118183531 G C CD3E Missense_Mutation p.R101T 0.08 tolerated(0.59) benign(0) TCGA-55-A4DF-01 11 118886586 118886586 C T RPS25 Missense_Mutation p.G116E 0.11 tolerated(0.2) benign(0.007) TCGA-55-A4DF-01 11 118888204 118888204 C G RPS25 Missense_Mutation p.D51H 0.15 deleterious(0) benign(0.156) TCGA-55-A4DF-01 11 121348870 121348870 C G SORL1 Nonsense_Mutation p.S149* 0.07 TCGA-55-A4DF-01 11 122944167 122944167 C G CLMP 3'UTR 0.13 TCGA-55-A4DF-01 11 123484227 123484227 G A GRAMD1B Silent p.E553E 0.08 TCGA-55-A4DF-01 11 128677116 128677116 G C FLI1 Missense_Mutation p.E255Q 0.09 tolerated(0.36) benign(0.006) TCGA-55-A4DF-01 11 133711927 133711927 G A SPATA19 Intron 0.18 TCGA-55-A4DF-01 11 133790076 133790076 G A IGSF9B Missense_Mutation p.R1182W 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-A4DF-01 11 13513870 13513870 C T PTH 3'UTR 0.26 TCGA-55-A4DF-01 11 18428790 18428790 G A LDHA Missense_Mutation p.D350N 0.19 tolerated(0.16) benign(0.026) TCGA-55-A4DF-01 11 18741778 18741778 C T IGSF22 Missense_Mutation p.D145N 0.27 tolerated(0.08) benign(0.081) TCGA-55-A4DF-01 11 20623037 20623037 C A SLC6A5 Silent p.I122I 0.20 TCGA-55-A4DF-01 11 20639364 20639364 C G SLC6A5 Silent p.L398L 0.13 TCGA-55-A4DF-01 11 26677928 26677928 G A ANO3 Missense_Mutation p.R888K 0.18 deleterious(0.04) probably_damaging(0.997) TCGA-55-A4DF-01 11 28119541 28119541 C T KIF18A Splice_Site 0.19 TCGA-55-A4DF-01 11 33049281 33049281 G C DEPDC7 Missense_Mutation p.E172Q 0.10 deleterious(0.03) probably_damaging(0.944) TCGA-55-A4DF-01 11 33308010 33308010 C T HIPK3 Missense_Mutation p.S17L 0.12 deleterious(0) possibly_damaging(0.521) TCGA-55-A4DF-01 11 33572681 33572681 G C KIAA1549L Silent p.L902L 0.34 TCGA-55-A4DF-01 11 45672072 45672072 G C CHST1 Missense_Mutation p.F134L 0.06 tolerated(0.47) probably_damaging(0.944) TCGA-55-A4DF-01 11 46886046 46886046 G A LRP4 Silent p.L1732L 0.23 TCGA-55-A4DF-01 11 48346777 48346777 C A OR4C3 Missense_Mutation p.D95E 0.08 deleterious(0.02) possibly_damaging(0.505) TCGA-55-A4DF-01 11 49214425 49214425 C T FOLH1 Missense_Mutation p.E145K 0.13 deleterious(0) probably_damaging(1) TCGA-55-A4DF-01 11 4945232 4945232 T G OR51G1 Missense_Mutation p.E113A 0.21 deleterious(0) probably_damaging(1) TCGA-55-A4DF-01 11 51412175 51412175 G T OR4A5 Missense_Mutation p.T74N 0.25 deleterious_low_confidence(0.04) benign(0.14) TCGA-55-A4DF-01 11 55587472 55587472 C A OR5D18 Missense_Mutation p.R123S 0.25 deleterious(0) possibly_damaging(0.86) TCGA-55-A4DF-01 11 56057826 56057826 G A OR8H1 Missense_Mutation p.S238F 0.11 deleterious(0) possibly_damaging(0.521) TCGA-55-A4DF-01 11 56380690 56380690 A G OR5M1 Missense_Mutation p.C97R 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-55-A4DF-01 11 56409511 56409511 G T OR5AP2 Silent p.P135P 0.33 TCGA-55-A4DF-01 11 5776736 5776736 C G OR52N4 Missense_Mutation p.P256A 0.12 deleterious(0.01) possibly_damaging(0.816) TCGA-55-A4DF-01 11 5878784 5878784 G T OR52E8 Missense_Mutation p.A50D 0.23 deleterious(0.01) benign(0.09) TCGA-55-A4DF-01 11 5878826 5878826 G - OR52E8 Frame_Shift_Del p.P36Lfs*19 0.22 TCGA-55-A4DF-01 11 58919946 58919946 G C FAM111A Missense_Mutation p.E269Q 0.17 deleterious(0.01) possibly_damaging(0.632) TCGA-55-A4DF-01 11 58920347 58920347 C T FAM111A Silent p.T402T 0.24 TCGA-55-A4DF-01 11 58979759 58979759 C A MPEG1 Missense_Mutation p.A194S 0.25 tolerated(0.36) probably_damaging(0.936) TCGA-55-A4DF-01 11 6023353 6023353 C A OR56A4 Silent p.L342L 0.10 TCGA-55-A4DF-01 11 6048391 6048391 C G OR56A1 Missense_Mutation p.E182Q 0.14 tolerated(0.07) possibly_damaging(0.784) TCGA-55-A4DF-01 11 61112951 61112951 G C DAK Silent p.L455L 0.07 TCGA-55-A4DF-01 11 62286867 62286867 C A AHNAK Nonsense_Mutation p.E5008* 0.11 TCGA-55-A4DF-01 11 62287716 62287716 C G AHNAK Missense_Mutation p.D4725H 0.12 probably_damaging(0.94) TCGA-55-A4DF-01 11 62287752 62287752 C G AHNAK Missense_Mutation p.E4713Q 0.14 possibly_damaging(0.898) TCGA-55-A4DF-01 11 62378649 62378649 G A EML3 Missense_Mutation p.S121F 0.29 deleterious(0.04) benign(0.002) TCGA-55-A4DF-01 11 62434207 62434207 C G METTL12 Nonsense_Mutation p.S136* 0.08 TCGA-55-A4DF-01 11 62434518 62434518 C T METTL12 Missense_Mutation p.H240Y 0.19 deleterious_low_confidence(0) benign(0.193) TCGA-55-A4DF-01 11 6260446 6260446 G A CNGA4 Missense_Mutation p.D4N 0.12 tolerated_low_confidence(0.16) benign(0) TCGA-55-A4DF-01 11 6265499 6265499 G T CNGA4 Nonsense_Mutation p.E530* 0.09 TCGA-55-A4DF-01 11 64821810 64821810 A C NAALADL1 Missense_Mutation p.L302V 0.11 tolerated(0.3) benign(0.001) TCGA-55-A4DF-01 11 65269266 65269266 G C MALAT1 RNA 0.57 TCGA-55-A4DF-01 11 65409957 65409957 C T SIPA1 Silent p.I277I 0.34 TCGA-55-A4DF-01 11 65819817 65819817 C T SF3B2 5'UTR 0.50 TCGA-55-A4DF-01 11 6636680 6636680 G A TPP1 Missense_Mutation p.S420L 0.22 tolerated(0.09) possibly_damaging(0.525) TCGA-55-A4DF-01 11 66392567 66392567 C T RBM14 Missense_Mutation p.S407L 0.14 deleterious(0.01) unknown(0) TCGA-55-A4DF-01 11 66468373 66468373 C T SPTBN2 Missense_Mutation p.R1066Q 0.10 tolerated(0.3) benign(0.353) TCGA-55-A4DF-01 11 6646949 6646949 C T DCHS1 Silent p.L2247L 0.13 TCGA-55-A4DF-01 11 7021684 7021684 T C ZNF214 Silent p.G410G 0.11 TCGA-55-A4DF-01 11 7674544 7674544 G A PPFIBP2 3'UTR 0.25 TCGA-55-A4DF-01 11 82996972 82996972 C T CCDC90B Missense_Mutation p.R15K 0.17 tolerated_low_confidence(0.94) benign(0.008) TCGA-55-A4DF-01 11 85436730 85436730 G A SYTL2 Missense_Mutation p.S257L 0.29 tolerated(0.12) benign(0.079) TCGA-55-A4DF-01 11 89166014 89166014 C G NOX4 Silent p.L162L 0.37 TCGA-55-A4DF-01 11 9305015 9305015 G A TMEM41B Silent p.L278L 0.33 TCGA-55-A4DF-01 12 101587471 101587471 C T SLC5A8 Silent p.V208V 0.48 TCGA-55-A4DF-01 12 10163368 10163368 G A CLEC12B Missense_Mutation p.E4K 0.16 tolerated(0.07) benign(0.007) TCGA-55-A4DF-01 12 104092910 104092910 G C STAB2 Missense_Mutation p.E1207Q 0.12 tolerated(0.16) benign(0.209) TCGA-55-A4DF-01 12 104100712 104100712 G T STAB2 Missense_Mutation p.G1380V 0.46 deleterious(0) probably_damaging(1) TCGA-55-A4DF-01 12 10750678 10750678 C T KLRAP1 RNA 0.11 TCGA-55-A4DF-01 12 121987442 121987442 G A KDM2B Missense_Mutation p.R167W 0.29 deleterious(0) probably_damaging(1) TCGA-55-A4DF-01 12 123472170 123472170 C T PITPNM2 Missense_Mutation p.E1051K 0.14 tolerated(0.31) benign(0.154) TCGA-55-A4DF-01 12 123920706 123920706 C T RILPL2 Missense_Mutation p.E88K 0.17 tolerated(0.05) possibly_damaging(0.787) TCGA-55-A4DF-01 12 124496966 124496966 G T ZNF664 Missense_Mutation p.C92F 0.06 deleterious(0) probably_damaging(0.995) TCGA-55-A4DF-01 12 130841562 130841562 C T PIWIL1 Nonsense_Mutation p.R502* 0.23 TCGA-55-A4DF-01 12 131357651 131357651 G A RAN Silent p.L75L 0.19 TCGA-55-A4DF-01 12 132466654 132466654 G A EP400 Silent p.T520T 0.05 TCGA-55-A4DF-01 12 14976484 14976484 G C C12orf60 Missense_Mutation p.K205N 0.13 tolerated(0.11) benign(0.033) TCGA-55-A4DF-01 12 15475724 15475724 G T PTPRO Missense_Mutation p.V22L 0.22 tolerated_low_confidence(0.38) benign(0.002) TCGA-55-A4DF-01 12 15774346 15774346 C A EPS8 Nonsense_Mutation p.E792* 0.24 TCGA-55-A4DF-01 12 1943903 1943903 C T LRTM2 3'UTR 0.09 TCGA-55-A4DF-01 12 1992053 1992053 C T CACNA2D4 Missense_Mutation p.E489K 0.12 deleterious(0.01) possibly_damaging(0.475) TCGA-55-A4DF-01 12 26629887 26629887 C G ITPR2 Missense_Mutation p.E2059D 0.24 tolerated(0.1) possibly_damaging(0.766) TCGA-55-A4DF-01 12 27890541 27890541 G T MRPS35 Missense_Mutation p.W234C 0.19 deleterious(0) possibly_damaging(0.663) TCGA-55-A4DF-01 12 2797642 2797642 C A CACNA1C Silent p.L1986L 0.36 TCGA-55-A4DF-01 12 28702200 28702200 C T CCDC91 3'UTR 0.23 TCGA-55-A4DF-01 12 29659671 29659671 G A TMTC1 3'Flank 0.17 TCGA-55-A4DF-01 12 32977035 32977035 C A PKP2 Missense_Mutation p.D584Y 0.16 deleterious(0) probably_damaging(0.996) TCGA-55-A4DF-01 12 33031120 33031120 C T PKP2 Missense_Mutation p.D232N 0.16 tolerated(0.14) benign(0.178) TCGA-55-A4DF-01 12 346454 346454 C T SLC6A13 Missense_Mutation p.R189Q 0.07 deleterious(0.01) probably_damaging(0.909) TCGA-55-A4DF-01 12 416662 416662 G C KDM5A Missense_Mutation p.I1296M 0.32 deleterious(0.01) possibly_damaging(0.887) TCGA-55-A4DF-01 12 43819460 43819460 T C ADAMTS20 Missense_Mutation p.R1381G 0.21 deleterious(0) probably_damaging(1) TCGA-55-A4DF-01 12 4430369 4430369 T A C12orf5 5'Flank 0.18 TCGA-55-A4DF-01 12 4626249 4626249 C A C12orf4 Missense_Mutation p.R380S 0.26 tolerated(0.9) benign(0.001) TCGA-55-A4DF-01 12 49391181 49391181 G C DDN Missense_Mutation p.S493W 0.17 deleterious_low_confidence(0) possibly_damaging(0.574) TCGA-55-A4DF-01 12 49689141 49689141 C T PRPH Missense_Mutation p.S53F 0.14 tolerated(0.22) possibly_damaging(0.622) TCGA-55-A4DF-01 12 50040705 50040705 C G FMNL3 Missense_Mutation p.E987Q 0.23 tolerated(0.1) probably_damaging(0.986) TCGA-55-A4DF-01 12 52761088 52761088 G A KRT85 Silent p.I34I 0.18 TCGA-55-A4DF-01 12 52844269 52844269 C G KRT6B Missense_Mutation p.D226H 0.11 deleterious(0.02) possibly_damaging(0.652) TCGA-55-A4DF-01 12 53573615 53573615 C T CSAD 5'UTR 0.38 TCGA-55-A4DF-01 12 54635661 54635661 G A CBX5 Missense_Mutation p.L152F 0.09 tolerated(0.13) probably_damaging(0.996) TCGA-55-A4DF-01 12 54635662 54635662 A T CBX5 Silent p.V151V 0.09 TCGA-55-A4DF-01 12 54676057 54676057 G T HNRNPA1 Missense_Mutation p.D155Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-55-A4DF-01 12 55039016 55039016 A G DCD Missense_Mutation p.V77A 0.13 deleterious_low_confidence(0.03) benign(0.294) TCGA-55-A4DF-01 12 55726117 55726117 G A OR6C3 Silent p.V211V 0.16 TCGA-55-A4DF-01 12 56077693 56077693 G A METTL7B Missense_Mutation p.G199R 0.10 tolerated(0.11) possibly_damaging(0.541) TCGA-55-A4DF-01 12 56360777 56360777 G A CDK2 5'UTR 0.12 TCGA-55-A4DF-01 12 5687152 5687152 G C ANO2 Missense_Mutation p.S803C 0.34 tolerated(0.15) probably_damaging(0.983) TCGA-55-A4DF-01 12 57112842 57112842 G C NACA Intron 0.24 TCGA-55-A4DF-01 12 57115090 57115090 G C NACA Missense_Mutation p.S75W 0.13 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-55-A4DF-01 12 57677637 57677637 C T R3HDM2 Missense_Mutation p.G367S 0.17 tolerated(0.4) benign(0.007) TCGA-55-A4DF-01 12 58000752 58000752 C T DTX3 Missense_Mutation p.R36W 0.15 deleterious(0.02) benign(0.257) TCGA-55-A4DF-01 12 64536240 64536240 G T SRGAP1 Missense_Mutation p.A1016S 0.35 tolerated_low_confidence(0.69) benign(0.001) TCGA-55-A4DF-01 12 6626627 6626627 C T NCAPD2 Silent p.L428L 0.18 TCGA-55-A4DF-01 12 6804596 6804596 C A PIANP Missense_Mutation p.R276L 0.24 deleterious_low_confidence(0) benign(0.433) TCGA-55-A4DF-01 12 7079375 7079375 C T PHB2 Missense_Mutation p.E66K 0.10 deleterious(0.01) probably_damaging(0.954) TCGA-55-A4DF-01 12 75601430 75601430 C T KCNC2 Missense_Mutation p.A112T 0.22 deleterious(0.02) possibly_damaging(0.858) TCGA-55-A4DF-01 12 80623121 80623121 C T OTOGL Nonsense_Mutation p.R183* 0.12 TCGA-55-A4DF-01 12 88588668 88588668 G A TMTC3 Missense_Mutation p.E663K 0.16 tolerated(0.67) benign(0.003) TCGA-55-A4DF-01 12 88900107 88900107 C T KITLG Missense_Mutation p.E255K 0.36 tolerated(0.18) probably_damaging(0.999) TCGA-55-A4DF-01 12 8995847 8995847 C A A2ML1 Missense_Mutation p.H456N 0.27 deleterious(0.05) benign(0.033) TCGA-55-A4DF-01 12 95365232 95365232 G C NDUFA12 Nonsense_Mutation p.S141* 0.20 TCGA-55-A4DF-01 13 25060419 25060419 C T PARP4 Silent p.Q413Q 0.16 TCGA-55-A4DF-01 13 25831393 25831393 C T MTMR6 Missense_Mutation p.V346I 0.48 deleterious(0.03) probably_damaging(0.98) TCGA-55-A4DF-01 13 31712995 31712995 C T HSPH1 Missense_Mutation p.E711K 0.33 tolerated(0.3) benign(0.345) TCGA-55-A4DF-01 13 32906483 32906483 G A BRCA2 Missense_Mutation p.V290I 0.49 tolerated(0.25) benign(0.034) TCGA-55-A4DF-01 13 32972372 32972372 C G BRCA2 Missense_Mutation p.S3241C 0.09 tolerated(0.15) benign(0.023) TCGA-55-A4DF-01 13 42748248 42748248 C T DGKH Missense_Mutation p.P474S 0.38 tolerated(0.28) benign(0.006) TCGA-55-A4DF-01 13 42888077 42888077 G T AKAP11 Splice_Site p.X1802_splice 0.57 TCGA-55-A4DF-01 13 43900639 43900639 G C ENOX1 Missense_Mutation p.F353L 0.16 deleterious(0.03) possibly_damaging(0.604) TCGA-55-A4DF-01 13 46287758 46287758 T C SPERT Missense_Mutation p.W200R 0.58 tolerated(0.47) probably_damaging(0.979) TCGA-55-A4DF-01 13 52639544 52639544 C T NEK5 Silent p.%3D 0.06 TCGA-55-A4DF-01 13 72063265 72063265 G C DACH1 Missense_Mutation p.S531C 0.14 benign(0.028) TCGA-55-A4DF-01 13 76104360 76104360 C G COMMD6 Missense_Mutation p.D33H 0.13 deleterious(0.01) probably_damaging(0.934) TCGA-55-A4DF-01 13 78474696 78474696 G C EDNRB Missense_Mutation p.L439V 0.16 tolerated(0.49) benign(0.036) TCGA-55-A4DF-01 13 97639372 97639372 C T OXGR1 Silent p.V214V 0.15 TCGA-55-A4DF-01 14 102675795 102675795 C A WDR20 Missense_Mutation p.P461T 0.26 deleterious(0.03) possibly_damaging(0.573) TCGA-55-A4DF-01 14 103406196 103406196 G A CDC42BPB Silent p.V1560V 0.13 TCGA-55-A4DF-01 14 106691826 106691826 C T IGHV3-21 Nonsense_Mutation p.W66* 0.26 TCGA-55-A4DF-01 14 20248535 20248535 C A OR4M1 Silent p.S18S 0.13 TCGA-55-A4DF-01 14 20403984 20403984 C A OR4K1 Silent p.S53S 0.21 TCGA-55-A4DF-01 14 21862293 21862293 G C CHD8 Silent p.L1887L 0.35 TCGA-55-A4DF-01 14 21964875 21964875 G A TOX4 3'UTR 0.67 TCGA-55-A4DF-01 14 38064147 38064147 C T FOXA1 Missense_Mutation p.E11K 0.14 deleterious(0.01) probably_damaging(0.947) TCGA-55-A4DF-01 14 39648436 39648436 G C PNN Missense_Mutation p.E214Q 0.19 deleterious(0.03) possibly_damaging(0.671) TCGA-55-A4DF-01 14 45564707 45564707 G C PRPF39 Missense_Mutation p.E89Q 0.11 tolerated(0.31) benign(0.039) TCGA-55-A4DF-01 14 45650895 45650895 T G FANCM Missense_Mutation p.F1458C 0.37 tolerated(0.18) benign(0.336) TCGA-55-A4DF-01 14 47311120 47311120 C T MDGA2 3'UTR 0.47 TCGA-55-A4DF-01 14 50760875 50760875 C T L2HGDH Silent p.L166L 0.09 TCGA-55-A4DF-01 14 51214793 51214793 C T NIN Missense_Mutation p.E1661K 0.24 deleterious(0) probably_damaging(0.997) TCGA-55-A4DF-01 14 51214802 51214802 G C NIN Missense_Mutation p.L1658V 0.09 deleterious(0) probably_damaging(0.998) TCGA-55-A4DF-01 14 52478385 52478385 C T NID2 Missense_Mutation p.G1146E 0.23 deleterious(0) probably_damaging(1) TCGA-55-A4DF-01 14 52937399 52937399 C T TXNDC16 Splice_Site p.X438_splice 0.17 TCGA-55-A4DF-01 14 60337148 60337148 G A RTN1 Silent p.P67P 0.14 TCGA-55-A4DF-01 14 65194490 65194490 G C PLEKHG3 Missense_Mutation p.K47N 0.11 tolerated(0.18) benign(0.127) TCGA-55-A4DF-01 14 70714240 70714240 C G ADAM21P1 RNA 0.18 TCGA-55-A4DF-01 14 73958652 73958652 T G HEATR4 Intron 0.41 TCGA-55-A4DF-01 14 74009751 74009751 C T ACOT1 Intron 0.15 TCGA-55-A4DF-01 14 74959988 74959988 G A NPC2 5'UTR 0.41 TCGA-55-A4DF-01 14 77304305 77304305 G C C14orf166B Missense_Mutation p.E196Q 0.38 tolerated(1) benign(0.002) TCGA-55-A4DF-01 14 78161091 78161091 C A ALKBH1 Nonsense_Mutation p.E149* 0.15 TCGA-55-A4DF-01 14 92170938 92170938 C G CATSPERB Missense_Mutation p.D192H 0.26 deleterious(0) probably_damaging(1) TCGA-55-A4DF-01 14 95053902 95053902 C T SERPINA5 Missense_Mutation p.S68F 0.30 deleterious(0) probably_damaging(1) TCGA-55-A4DF-01 14 96795924 96795924 G A ATG2B Missense_Mutation p.S593L 0.24 tolerated(0.07) possibly_damaging(0.728) TCGA-55-A4DF-01 14 99876523 99876523 G A SETD3 Intron 0.06 TCGA-55-A4DF-01 15 25458647 25458647 C A SNORD115-22 3'Flank 0.56 TCGA-55-A4DF-01 15 28356962 28356962 C T HERC2 Missense_Mutation p.D4818N 0.14 probably_damaging(0.983) TCGA-55-A4DF-01 15 33905393 33905393 C A RYR3 Missense_Mutation p.P725H 0.30 probably_damaging(0.985) TCGA-55-A4DF-01 15 33905394 33905394 C A RYR3 Silent p.P725P 0.30 TCGA-55-A4DF-01 15 34455834 34455834 T C KATNBL1 Missense_Mutation p.N15S 0.15 tolerated(0.41) benign(0.014) TCGA-55-A4DF-01 15 38766385 38766385 A G FAM98B Silent p.E205E 0.39 TCGA-55-A4DF-01 15 41625161 41625161 C G NUSAP1 Missense_Mutation p.I2M 0.16 deleterious(0.02) possibly_damaging(0.525) TCGA-55-A4DF-01 15 42820509 42820509 G A SNAP23 Missense_Mutation p.G106S 0.24 tolerated(0.13) benign(0.12) TCGA-55-A4DF-01 15 43568685 43568685 C T TGM7 Missense_Mutation p.D701N 0.14 tolerated(0.74) probably_damaging(0.92) TCGA-55-A4DF-01 15 43818393 43818393 G A MAP1A Silent p.E1574E 0.18 TCGA-55-A4DF-01 15 44888406 44888406 C T SPG11 Missense_Mutation p.E1437K 0.21 tolerated(0.35) probably_damaging(0.916) TCGA-55-A4DF-01 15 44889035 44889035 C T SPG11 Missense_Mutation p.D1370N 0.14 tolerated(0.05) probably_damaging(0.981) TCGA-55-A4DF-01 15 44890865 44890865 C G SPG11 Missense_Mutation p.E1286Q 0.22 tolerated(0.06) possibly_damaging(0.859) TCGA-55-A4DF-01 15 48060910 48060910 C T SEMA6D Missense_Mutation p.S633F 0.19 tolerated(0.08) possibly_damaging(0.828) TCGA-55-A4DF-01 15 52017203 52017203 G C LYSMD2 Missense_Mutation p.S130C 0.14 deleterious(0) probably_damaging(0.99) TCGA-55-A4DF-01 15 59102531 59102531 A G FAM63B Missense_Mutation p.I356V 0.42 tolerated(0.1) benign(0.268) TCGA-55-A4DF-01 15 62939627 62939627 G A TLN2 Missense_Mutation p.E40K 0.13 deleterious(0) possibly_damaging(0.81) TCGA-55-A4DF-01 15 63008574 63008574 G C TLN2 Silent p.L893L 0.16 TCGA-55-A4DF-01 15 67546868 67546868 G C AAGAB Intron 0.33 TCGA-55-A4DF-01 15 69652306 69652306 G A PAQR5 Intron 0.50 TCGA-55-A4DF-01 15 75498945 75498945 C T C15orf39 Silent p.L186L 0.08 TCGA-55-A4DF-01 15 75503331 75503331 C T C15orf39 Silent p.F1006F 0.16 TCGA-55-A4DF-01 15 79058682 79058682 C T ADAMTS7 Missense_Mutation p.E1191K 0.18 tolerated(0.79) benign(0.013) TCGA-55-A4DF-01 15 79183876 79183876 C T MORF4L1 Missense_Mutation p.R173W 0.14 deleterious(0.02) benign(0.052) TCGA-55-A4DF-01 15 80445444 80445444 C T FAH Silent p.N16N 0.09 TCGA-55-A4DF-01 15 89169978 89169978 G C AEN Missense_Mutation p.E180Q 0.22 tolerated(0.13) benign(0.315) TCGA-55-A4DF-01 15 89416218 89416218 G T ACAN Missense_Mutation p.C2432F 0.53 deleterious(0) probably_damaging(0.999) TCGA-55-A4DF-01 16 10031816 10031816 G A GRIN2A Missense_Mutation p.P336L 0.16 deleterious(0) benign(0) TCGA-55-A4DF-01 16 12009719 12009719 C T GSPT1 5'UTR 0.24 TCGA-55-A4DF-01 16 14020433 14020433 G C ERCC4 Missense_Mutation p.R135T 0.11 deleterious(0) benign(0.199) TCGA-55-A4DF-01 16 1826138 1826138 G A EME2 Missense_Mutation p.E347K 0.16 tolerated(0.89) benign(0.004) TCGA-55-A4DF-01 16 1828309 1828309 G A SPSB3 Silent p.V106V 0.30 TCGA-55-A4DF-01 16 18895424 18895424 G C SMG1 Missense_Mutation p.Q363E 0.15 deleterious(0) possibly_damaging(0.696) TCGA-55-A4DF-01 16 19020721 19020721 G T TMC7 Nonsense_Mutation p.E99* 0.13 TCGA-55-A4DF-01 16 19554260 19554260 C G CCP110 Missense_Mutation p.L810V 0.23 deleterious(0) probably_damaging(0.978) TCGA-55-A4DF-01 16 21123415 21123415 A C DNAH3 Missense_Mutation p.L607V 0.27 tolerated(0.13) benign(0.238) TCGA-55-A4DF-01 16 21156688 21156688 G T DNAH3 Missense_Mutation p.R88S 0.13 tolerated_low_confidence(0.5) benign(0.002) TCGA-55-A4DF-01 16 22558154 22558154 G T RP11-368J21.3 RNA 0.42 TCGA-55-A4DF-01 16 2503251 2503251 C G CCNF Missense_Mutation p.L510V 0.15 deleterious(0.03) probably_damaging(0.98) TCGA-55-A4DF-01 16 25268367 25268367 C T ZKSCAN2 Missense_Mutation p.E28K 0.09 tolerated(0.25) benign(0.024) TCGA-55-A4DF-01 16 28508559 28508559 G A APOBR Missense_Mutation p.D733N 0.23 tolerated(0.14) possibly_damaging(0.728) TCGA-55-A4DF-01 16 28620180 28620180 C T SULT1A1 Intron 0.16 TCGA-55-A4DF-01 16 30977114 30977114 C A SETD1A Missense_Mutation p.P638T 0.15 benign(0.048) TCGA-55-A4DF-01 16 31105701 31105701 C T VKORC1 Intron 0.16 TCGA-55-A4DF-01 16 31153107 31153107 C T PRSS36 Missense_Mutation p.D566N 0.20 tolerated(0.22) benign(0.011) TCGA-55-A4DF-01 16 31230798 31230798 C T TRIM72 Silent p.V225V 0.13 TCGA-55-A4DF-01 16 3452086 3452086 G C ZNF174 Missense_Mutation p.E28Q 0.04 deleterious(0.01) probably_damaging(0.994) TCGA-55-A4DF-01 16 3632493 3632493 C T SLX4 Silent p.L1785L 0.10 TCGA-55-A4DF-01 16 3778085 3778085 G C CREBBP Silent p.L2321L 0.39 TCGA-55-A4DF-01 16 4042218 4042218 G C ADCY9 Silent p.L712L 0.09 TCGA-55-A4DF-01 16 424344 424344 C T TMEM8A Silent p.Q544Q 0.25 TCGA-55-A4DF-01 16 48175259 48175259 C T ABCC12 Missense_Mutation p.R94Q 0.07 tolerated(0.53) benign(0.004) TCGA-55-A4DF-01 16 48399444 48399444 C T SIAH1 5'UTR 0.27 TCGA-55-A4DF-01 16 56362697 56362697 C A GNAO1 Missense_Mutation p.A153D 0.33 deleterious(0) probably_damaging(0.998) TCGA-55-A4DF-01 16 56500801 56500801 G A OGFOD1 Silent p.P193P 0.18 TCGA-55-A4DF-01 16 57003894 57003894 C T CETP Missense_Mutation p.H170Y 0.33 tolerated(0.07) benign(0.02) TCGA-55-A4DF-01 16 57155064 57155064 C G CPNE2 Silent p.T247T 0.24 TCGA-55-A4DF-01 16 58019394 58019394 C T TEPP Silent p.L259L 0.08 TCGA-55-A4DF-01 16 58616808 58616808 C G CNOT1 Splice_Site p.X312_splice 0.27 TCGA-55-A4DF-01 16 599442 599442 G A CAPN15 Missense_Mutation p.D605N 0.24 tolerated(0.07) possibly_damaging(0.898) TCGA-55-A4DF-01 16 67220727 67220727 C T EXOC3L1 Missense_Mutation p.E407K 0.16 tolerated(0.06) benign(0.084) TCGA-55-A4DF-01 16 67271225 67271225 G C FHOD1 Missense_Mutation p.Q304E 0.24 deleterious(0.02) probably_damaging(0.955) TCGA-55-A4DF-01 16 67709801 67709801 C G GFOD2 Missense_Mutation p.E139Q 0.16 deleterious(0.02) benign(0.053) TCGA-55-A4DF-01 16 67860941 67860941 C T TSNAXIP1 Nonsense_Mutation p.Q490* 0.33 TCGA-55-A4DF-01 16 67861173 67861173 C T TSNAXIP1 Silent p.F508F 0.22 TCGA-55-A4DF-01 16 67861179 67861179 C G TSNAXIP1 Silent p.L510L 0.24 TCGA-55-A4DF-01 16 68265394 68265394 G C ESRP2 Silent p.L501L 0.26 TCGA-55-A4DF-01 16 68847300 68847300 G C CDH1 Missense_Mutation p.A408P 0.13 deleterious(0.01) probably_damaging(0.923) TCGA-55-A4DF-01 16 70497129 70497129 C T FUK Silent p.I12I 0.10 TCGA-55-A4DF-01 16 72137099 72137099 C G DHX38 Silent p.L542L 0.11 TCGA-55-A4DF-01 16 75513169 75513169 C T CHST6 Silent p.P186P 0.27 TCGA-55-A4DF-01 16 76495954 76495954 C T CNTNAP4 Silent p.L406L 0.07 TCGA-55-A4DF-01 16 89294956 89294956 G C ZNF778 Missense_Mutation p.E726Q 0.06 tolerated(0.05) possibly_damaging(0.777) TCGA-55-A4DF-01 16 89349596 89349596 G T ANKRD11 Silent p.I1118I 0.16 TCGA-55-A4DF-01 16 89350371 89350371 G A ANKRD11 Missense_Mutation p.S860L 0.16 probably_damaging(0.99) TCGA-55-A4DF-01 16 89775668 89775668 C G VPS9D1 Missense_Mutation p.E522Q 0.09 deleterious(0.03) possibly_damaging(0.599) TCGA-55-A4DF-01 16 89986597 89986597 G A MC1R Missense_Mutation p.E311K 0.10 tolerated(0.22) benign(0.012) TCGA-55-A4DF-01 16 9934817 9934817 A T GRIN2A Missense_Mutation p.N491K 0.21 deleterious(0) probably_damaging(0.994) TCGA-55-A4DF-01 17 10224972 10224972 C G MYH13 Missense_Mutation p.L996F 0.11 deleterious(0) benign(0.319) TCGA-55-A4DF-01 17 10356489 10356489 G A MYH4 Silent p.L1031L 0.50 TCGA-55-A4DF-01 17 11572518 11572518 T A DNAH9 Missense_Mutation p.F957I 0.14 benign(0.04) TCGA-55-A4DF-01 17 11806224 11806224 T A DNAH9 Silent p.A3865A 0.50 TCGA-55-A4DF-01 17 11895946 11895946 G A ZNF18 Silent p.F67F 0.12 TCGA-55-A4DF-01 17 18219223 18219223 G A SMCR8 Silent p.Q40Q 0.17 TCGA-55-A4DF-01 17 19770655 19770655 C A ULK2 Missense_Mutation p.G26W 0.45 deleterious(0) probably_damaging(0.984) TCGA-55-A4DF-01 17 2594900 2594900 C T CLUH Intron 0.20 TCGA-55-A4DF-01 17 26874227 26874227 G A UNC119 3'UTR 0.65 TCGA-55-A4DF-01 17 29220630 29220630 G A ATAD5 Missense_Mutation p.D1587N 0.38 tolerated(0.46) benign(0.005) TCGA-55-A4DF-01 17 32964554 32964554 G T TMEM132E Missense_Mutation p.G753V 0.53 tolerated(0.09) benign(0.232) TCGA-55-A4DF-01 17 3634467 3634467 G A ITGAE Missense_Mutation p.S922L 0.52 tolerated(0.45) benign(0.046) TCGA-55-A4DF-01 17 37566025 37566025 G T MED1 Missense_Mutation p.Q817K 0.15 tolerated_low_confidence(0.09) benign(0.366) TCGA-55-A4DF-01 17 3772789 3772789 T A CAMKK1 Missense_Mutation p.T483S 0.53 tolerated(0.88) benign(0.024) TCGA-55-A4DF-01 17 37901538 37901538 C T GRB7 Missense_Mutation p.R375C 0.08 deleterious(0) probably_damaging(0.959) TCGA-55-A4DF-01 17 37902034 37902034 C T GRB7 Silent p.L444L 0.17 TCGA-55-A4DF-01 17 38858140 38858140 C G KRT24 Missense_Mutation p.D221H 0.09 deleterious(0) probably_damaging(0.997) TCGA-55-A4DF-01 17 39579164 39579164 G A KRT37 Missense_Mutation p.H200Y 0.53 deleterious(0.02) benign(0.003) TCGA-55-A4DF-01 17 39633379 39633379 C A KRT35 Missense_Mutation p.G433C 0.15 tolerated(0.16) possibly_damaging(0.525) TCGA-55-A4DF-01 17 41180510 41180510 C G RND2 Missense_Mutation p.S166C 0.19 deleterious(0.04) benign(0.098) TCGA-55-A4DF-01 17 43226401 43226401 G C HEXIM1 5'UTR 0.33 TCGA-55-A4DF-01 17 43226542 43226542 G T HEXIM1 5'UTR 0.13 TCGA-55-A4DF-01 17 43226681 43226681 G C HEXIM1 Missense_Mutation p.E42Q 0.13 tolerated_low_confidence(0.07) benign(0.014) TCGA-55-A4DF-01 17 43226969 43226969 G A HEXIM1 Missense_Mutation p.E138K 0.11 tolerated(0.12) benign(0.007) TCGA-55-A4DF-01 17 43227533 43227533 G T HEXIM1 Nonsense_Mutation p.E326* 0.08 TCGA-55-A4DF-01 17 43246807 43246807 C T HEXIM2 Silent p.I164I 0.16 TCGA-55-A4DF-01 17 43368043 43368043 G C MAP3K14 RNA 0.57 TCGA-55-A4DF-01 17 456699 456699 C T VPS53 Missense_Mutation p.E570K 0.16 deleterious(0.01) possibly_damaging(0.786) TCGA-55-A4DF-01 17 45909280 45909280 G C LRRC46 5'UTR 0.51 TCGA-55-A4DF-01 17 47041787 47041787 G C GIP Missense_Mutation p.R48G 0.11 deleterious(0.01) probably_damaging(0.916) TCGA-55-A4DF-01 17 4804385 4804385 G A CHRNE Silent p.L234L 0.13 TCGA-55-A4DF-01 17 4805142 4805142 C A C17orf107 3'UTR 0.43 TCGA-55-A4DF-01 17 48263188 48263188 G A COL1A1 Missense_Mutation p.A1400V 0.43 unknown(0) TCGA-55-A4DF-01 17 48918443 48918443 C T WFIKKN2 3'UTR 0.20 TCGA-55-A4DF-01 17 54921461 54921461 C G DGKE Missense_Mutation p.F182L 0.15 deleterious(0.02) probably_damaging(0.917) TCGA-55-A4DF-01 17 56388558 56388558 G A BZRAP1 Missense_Mutation p.S1033L 0.12 deleterious(0.01) benign(0.216) TCGA-55-A4DF-01 17 56434943 56434943 G A RNF43 Missense_Mutation p.R732C 0.05 tolerated_low_confidence(0.2) benign(0.002) TCGA-55-A4DF-01 17 57287504 57287504 G A SMG8 Missense_Mutation p.G31E 0.26 tolerated_low_confidence(0.09) probably_damaging(0.931) TCGA-55-A4DF-01 17 58511076 58511076 C G C17orf64 3'Flank 0.59 TCGA-55-A4DF-01 17 61744319 61744319 C G MAP3K3 Missense_Mutation p.S165C 0.15 tolerated(0.09) possibly_damaging(0.525) TCGA-55-A4DF-01 17 62891187 62891187 T A LRRC37A3 Missense_Mutation p.K730I 0.42 deleterious(0.02) benign(0.052) TCGA-55-A4DF-01 17 648672 648672 G A GEMIN4 Missense_Mutation p.R871C 0.21 tolerated(0.14) benign(0.001) TCGA-55-A4DF-01 17 66982457 66982457 C T ABCA9 Silent p.L1352L 0.14 TCGA-55-A4DF-01 17 7125568 7125568 G A ACADVL Silent p.V298V 0.51 TCGA-55-A4DF-01 17 74722673 74722673 C G JMJD6 5'UTR 0.56 TCGA-55-A4DF-01 17 74900417 74900417 C T MGAT5B Silent p.L212L 0.45 TCGA-55-A4DF-01 17 7578555 7578555 C A TP53 Splice_Site p.X126_splice 0.33 TCGA-55-A4DF-01 17 76495162 76495162 C G DNAH17 Missense_Mutation p.Q1877H 0.59 probably_damaging(0.994) TCGA-55-A4DF-01 17 77710993 77710993 C T ENPP7 Silent p.L394L 0.36 TCGA-55-A4DF-01 17 77755768 77755768 C T CBX2 Intron 0.48 TCGA-55-A4DF-01 17 78195423 78195423 G T SLC26A11 Missense_Mutation p.A22S 0.37 tolerated_low_confidence(0.54) benign(0.003) TCGA-55-A4DF-01 17 80280235 80280235 G A SECTM1 Silent p.F183F 0.18 TCGA-55-A4DF-01 17 8048176 8048176 A T PER1 Missense_Mutation p.L785Q 0.42 deleterious(0.03) possibly_damaging(0.707) TCGA-55-A4DF-01 17 8393687 8393687 C T MYH10 Missense_Mutation p.E1619K 0.17 benign(0.008) TCGA-55-A4DF-01 17 8646946 8646946 G T CCDC42 Missense_Mutation p.Q98K 0.45 tolerated(1) probably_damaging(0.966) TCGA-55-A4DF-01 17 902081 902081 G A TIMM22 Missense_Mutation p.D101N 0.26 tolerated(0.2) benign(0.159) TCGA-55-A4DF-01 17 9604539 9604539 C T USP43 Nonsense_Mutation p.Q547* 0.14 TCGA-55-A4DF-01 17 9792953 9792953 C G GLP2R Silent p.S531S 0.09 TCGA-55-A4DF-01 18 10677751 10677751 T A PIEZO2 Missense_Mutation p.T2579S 0.11 tolerated(0.36) benign(0.007) TCGA-55-A4DF-01 18 19153654 19153654 G C ESCO1 Nonsense_Mutation p.S384* 0.17 TCGA-55-A4DF-01 18 19371426 19371426 C A MIB1 Missense_Mutation p.Q334K 0.15 tolerated(0.73) benign(0.001) TCGA-55-A4DF-01 18 21712579 21712579 C T TTC39C 3'UTR 0.32 TCGA-55-A4DF-01 18 29122596 29122596 C T DSG2 Silent p.V705V 0.51 TCGA-55-A4DF-01 18 5406941 5406941 C G EPB41L3 Silent p.L728L 0.10 TCGA-55-A4DF-01 18 5419714 5419714 C T EPB41L3 Missense_Mutation p.G501E 0.10 tolerated(0.2) benign(0.005) TCGA-55-A4DF-01 18 56620909 56620909 C T ZNF532 Missense_Mutation p.P1010S 0.10 tolerated(0.24) benign(0.013) TCGA-55-A4DF-01 18 59203754 59203754 G C CDH20 Missense_Mutation p.G434R 0.11 deleterious(0.01) benign(0.323) TCGA-55-A4DF-01 18 65181301 65181301 T C DSEL Missense_Mutation p.D192G 0.33 deleterious(0) probably_damaging(0.999) TCGA-55-A4DF-01 18 662174 662174 C A TYMS Missense_Mutation p.S103Y 0.13 deleterious(0) possibly_damaging(0.626) TCGA-55-A4DF-01 18 7032108 7032108 C A LAMA1 Missense_Mutation p.C744F 0.10 deleterious(0) probably_damaging(0.998) TCGA-55-A4DF-01 18 9256469 9256469 G A ANKRD12 Silent p.K1068K 0.15 TCGA-55-A4DF-01 19 1054225 1054225 G A ABCA7 Missense_Mutation p.G1204E 0.21 tolerated(0.11) benign(0.006) TCGA-55-A4DF-01 19 1055121 1055121 G T ABCA7 Nonsense_Mutation p.E1326* 0.24 TCGA-55-A4DF-01 19 10599867 10599867 C A KEAP1 Splice_Site p.X570_splice 0.48 TCGA-55-A4DF-01 19 11144031 11144031 C G SMARCA4 Silent p.L1204L 0.19 TCGA-55-A4DF-01 19 11311045 11311045 G C DOCK6 Missense_Mutation p.L2014V 0.56 deleterious(0) probably_damaging(0.999) TCGA-55-A4DF-01 19 12296974 12296974 G A ZNF136 Missense_Mutation p.R59Q 0.33 tolerated(1) benign(0.001) TCGA-55-A4DF-01 19 12297668 12297668 G C ZNF136 Missense_Mutation p.E159Q 0.25 tolerated(0.05) probably_damaging(0.998) TCGA-55-A4DF-01 19 12502655 12502655 C T ZNF799 Missense_Mutation p.R186K 0.49 tolerated(0.85) benign(0.202) TCGA-55-A4DF-01 19 12981644 12981644 G T MAST1 Nonsense_Mutation p.E1004* 0.11 TCGA-55-A4DF-01 19 13322945 13322945 G T CACNA1A Missense_Mutation p.S2092Y 0.21 possibly_damaging(0.781) TCGA-55-A4DF-01 19 14028969 14028969 G T CC2D1A Missense_Mutation p.D279Y 0.30 deleterious(0) probably_damaging(0.928) TCGA-55-A4DF-01 19 14757990 14757990 C G EMR3 Intron 0.15 TCGA-55-A4DF-01 19 14758112 14758112 C T EMR3 Missense_Mutation p.E255K 0.28 tolerated(0.85) benign(0.042) TCGA-55-A4DF-01 19 15472973 15472973 G T AKAP8 Missense_Mutation p.T417N 0.42 tolerated(0.13) probably_damaging(1) TCGA-55-A4DF-01 19 15739164 15739164 C T CYP4F8 RNA 0.16 TCGA-55-A4DF-01 19 1785290 1785290 G C ATP8B3 Missense_Mutation p.L1134V 0.61 deleterious(0.01) possibly_damaging(0.632) TCGA-55-A4DF-01 19 19408148 19408148 A G SUGP1 Missense_Mutation p.L298P 0.42 deleterious(0) probably_damaging(0.999) TCGA-55-A4DF-01 19 21300883 21300883 C G ZNF714 Missense_Mutation p.N471K 0.08 tolerated(1) benign(0) TCGA-55-A4DF-01 19 22155609 22155609 G A ZNF208 Missense_Mutation p.H743Y 0.05 deleterious(0.03) possibly_damaging(0.765) TCGA-55-A4DF-01 19 22940775 22940775 C T ZNF99 Missense_Mutation p.E646K 0.06 deleterious(0.03) benign(0.05) TCGA-55-A4DF-01 19 22941633 22941633 C G ZNF99 Missense_Mutation p.E360Q 0.06 tolerated(1) possibly_damaging(0.607) TCGA-55-A4DF-01 19 2438277 2438277 C A LMNB2 Missense_Mutation p.G190C 0.37 deleterious(0.01) probably_damaging(0.988) TCGA-55-A4DF-01 19 2733331 2733331 G C SLC39A3 Missense_Mutation p.F121L 0.23 tolerated(0.11) benign(0.34) TCGA-55-A4DF-01 19 2799686 2799686 G A THOP1 Splice_Site p.X163_splice 0.38 TCGA-55-A4DF-01 19 30935073 30935073 C A ZNF536 Missense_Mutation p.L202M 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-55-A4DF-01 19 31769536 31769536 C T TSHZ3 Missense_Mutation p.C388Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-55-A4DF-01 19 33075909 33075909 G A PDCD5 Missense_Mutation p.R53Q 0.08 deleterious(0.02) benign(0.243) TCGA-55-A4DF-01 19 33089227 33089227 G A ANKRD27 Missense_Mutation p.H993Y 0.07 deleterious_low_confidence(0.05) benign(0.152) TCGA-55-A4DF-01 19 33666646 33666646 C G WDR88 3'UTR 0.45 TCGA-55-A4DF-01 19 34263835 34263835 C A CHST8 Missense_Mutation p.A381E 0.14 tolerated(1) benign(0.03) TCGA-55-A4DF-01 19 35175846 35175846 C T ZNF302 Nonsense_Mutation p.Q302* 0.07 TCGA-55-A4DF-01 19 35832319 35832319 C T CD22 Silent p.L527L 0.07 TCGA-55-A4DF-01 19 36019096 36019096 C T SBSN Missense_Mutation p.E30K 0.06 deleterious(0.05) probably_damaging(0.979) TCGA-55-A4DF-01 19 36034291 36034291 C G GAPDHS Nonsense_Mutation p.S264* 0.07 TCGA-55-A4DF-01 19 36142163 36142163 G A COX6B1 Silent p.E6E 0.11 TCGA-55-A4DF-01 19 36207480 36207480 C T ZBTB32 Silent p.C430C 0.63 TCGA-55-A4DF-01 19 36277909 36277909 C T ARHGAP33 Missense_Mutation p.A685V 0.21 deleterious_low_confidence(0) benign(0.188) TCGA-55-A4DF-01 19 36351520 36351520 C T KIRREL2 Silent p.V293V 0.08 TCGA-55-A4DF-01 19 36357120 36357120 C T KIRREL2 Missense_Mutation p.A618V 0.49 tolerated(0.22) benign(0.14) TCGA-55-A4DF-01 19 36584997 36584997 G A WDR62 Missense_Mutation p.D800N 0.16 deleterious(0.02) possibly_damaging(0.549) TCGA-55-A4DF-01 19 36727417 36727417 C G ZNF146 Missense_Mutation p.F25L 0.06 deleterious(0.01) benign(0.217) TCGA-55-A4DF-01 19 36727581 36727581 C T ZNF146 Missense_Mutation p.S80L 0.07 deleterious(0) benign(0.11) TCGA-55-A4DF-01 19 37441436 37441436 C A ZNF568 Missense_Mutation p.L461I 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-55-A4DF-01 19 37643190 37643190 G A ZNF585A Silent p.L482L 0.06 TCGA-55-A4DF-01 19 37678004 37678004 G C ZNF585B Missense_Mutation p.F145L 0.06 tolerated(1) benign(0.002) TCGA-55-A4DF-01 19 37879497 37879497 G A ZNF527 Silent p.Q182Q 0.10 TCGA-55-A4DF-01 19 37880420 37880420 G C ZNF527 Missense_Mutation p.R490T 0.08 deleterious(0) probably_damaging(0.999) TCGA-55-A4DF-01 19 37880684 37880684 G C ZNF527 Missense_Mutation p.G578A 0.06 deleterious(0.03) probably_damaging(1) TCGA-55-A4DF-01 19 40723265 40723265 G A TTC9B Nonsense_Mutation p.Q147* 0.45 TCGA-55-A4DF-01 19 42818458 42818458 C G TMEM145 Missense_Mutation p.S52W 0.58 deleterious(0) probably_damaging(0.99) TCGA-55-A4DF-01 19 42866316 42866316 G T MEGF8 Missense_Mutation p.S1865I 0.43 deleterious(0) possibly_damaging(0.713) TCGA-55-A4DF-01 19 4528892 4528892 C A PLIN5 Intron 0.54 TCGA-55-A4DF-01 19 45721542 45721542 C T EXOC3L2 Silent p.L192L 0.15 TCGA-55-A4DF-01 19 45997432 45997432 C A RTN2 Missense_Mutation p.R269L 0.51 tolerated_low_confidence(0.24) benign(0.001) TCGA-55-A4DF-01 19 46268913 46268914 GC T SIX5 Frame_Shift_Del p.A689Tfs*6 0.41 TCGA-55-A4DF-01 19 4702109 4702109 C T DPP9 Silent p.V314V 0.38 TCGA-55-A4DF-01 19 47503858 47503858 G A ARHGAP35 Silent p.P1471P 0.22 TCGA-55-A4DF-01 19 48248932 48248932 G C GLTSCR2 Missense_Mutation p.R39P 0.15 deleterious(0) probably_damaging(0.936) TCGA-55-A4DF-01 19 48519268 48519268 A T ELSPBP1 Missense_Mutation p.K109N 0.57 tolerated(0.26) benign(0.011) TCGA-55-A4DF-01 19 49641658 49641658 C T PPFIA3 Missense_Mutation p.P684S 0.16 tolerated(0.08) probably_damaging(0.998) TCGA-55-A4DF-01 19 49862728 49862728 G C TEAD2 Missense_Mutation p.I87M 0.13 deleterious(0) probably_damaging(0.997) TCGA-55-A4DF-01 19 50154156 50154156 C T SCAF1 Silent p.T170T 0.55 TCGA-55-A4DF-01 19 50245187 50245187 C G TSKS Silent p.L484L 0.27 TCGA-55-A4DF-01 19 52002906 52002906 C T SIGLEC12 Silent p.L291L 0.09 TCGA-55-A4DF-01 19 52507064 52507064 C T ZNF615 5'UTR 0.16 TCGA-55-A4DF-01 19 53046537 53046537 C G ZNF808 5'UTR 0.18 TCGA-55-A4DF-01 19 53854458 53854458 C T ZNF845 Missense_Mutation p.S177F 0.28 tolerated(0.71) possibly_damaging(0.675) TCGA-55-A4DF-01 19 54301508 54301508 G A NLRP12 Silent p.L972L 0.14 TCGA-55-A4DF-01 19 54756392 54756392 C A LILRB5 Missense_Mutation p.G499W 0.50 deleterious(0.01) probably_damaging(0.977) TCGA-55-A4DF-01 19 54802075 54802076 - A LILRA3 Frame_Shift_Ins p.R373Afs*5 0.10 TCGA-55-A4DF-01 19 54823311 54823311 G C LILRA5 Missense_Mutation p.L78V 0.11 deleterious(0.02) probably_damaging(0.966) TCGA-55-A4DF-01 19 55085321 55085321 G C LILRA2 5'UTR 0.52 TCGA-55-A4DF-01 19 56370266 56370266 C G NLRP4 Missense_Mutation p.L503V 0.35 tolerated(0.2) benign(0.047) TCGA-55-A4DF-01 19 5661719 5661719 G A SAFB Missense_Mutation p.E685K 0.29 deleterious(0.01) unknown(0) TCGA-55-A4DF-01 19 57802323 57802323 G A ZNF460 Missense_Mutation p.M138I 0.41 deleterious(0.03) benign(0.012) TCGA-55-A4DF-01 19 57840713 57840713 G C ZNF543 3'UTR 0.08 TCGA-55-A4DF-01 19 57910963 57910963 C T ZNF548 Silent p.L448L 0.15 TCGA-55-A4DF-01 19 58361505 58361505 G A CTD-2583A14.10 Intron 0.17 TCGA-55-A4DF-01 19 629955 629955 C A POLRMT Missense_Mutation p.R136L 0.33 deleterious(0.03) benign(0.131) TCGA-55-A4DF-01 19 7976017 7976017 G C MAP2K7 Silent p.R276R 0.10 TCGA-55-A4DF-01 19 9066814 9066814 C G MUC16 Missense_Mutation p.E6878Q 0.06 unknown(0) TCGA-55-A4DF-01 19 9083653 9083653 G T MUC16 Missense_Mutation p.P2721Q 0.44 unknown(0) TCGA-55-A4DF-01 19 9213242 9213242 C T OR7G2 Silent p.L247L 0.39 TCGA-55-A4DF-01 19 9965537 9965537 G A OLFM2 Silent p.V230V 0.38 TCGA-55-A4DF-01 19 9968409 9968409 G C OLFM2 Silent p.L114L 0.17 TCGA-55-A4DF-01 1 10720540 10720540 C T CASZ1 Missense_Mutation p.G187S 0.20 deleterious_low_confidence(0.01) probably_damaging(0.957) TCGA-55-A4DF-01 1 109756748 109756748 G A SARS Missense_Mutation p.R45Q 0.09 tolerated(0.54) benign(0.003) TCGA-55-A4DF-01 1 109806952 109806952 G T CELSR2 Missense_Mutation p.G1752C 0.14 deleterious(0.04) possibly_damaging(0.867) TCGA-55-A4DF-01 1 110211103 110211103 G C GSTM2 Missense_Mutation p.K31N 0.16 deleterious(0) probably_damaging(0.958) TCGA-55-A4DF-01 1 112997080 112997080 G C CTTNBP2NL Missense_Mutation p.D114H 0.45 deleterious(0) probably_damaging(0.999) TCGA-55-A4DF-01 1 114157248 114157248 A T MAGI3 Silent p.I348I 0.35 TCGA-55-A4DF-01 1 114516088 114516088 G C HIPK1 Missense_Mutation p.G1196A 0.19 tolerated(0.23) possibly_damaging(0.541) TCGA-55-A4DF-01 1 118420694 118420694 C G GDAP2 Silent p.L461L 0.29 TCGA-55-A4DF-01 1 12939673 12939673 T A PRAMEF4 Missense_Mutation p.S377C 0.13 deleterious(0.03) probably_damaging(0.973) TCGA-55-A4DF-01 1 145096546 145096546 G C SEC22B RNA 0.56 TCGA-55-A4DF-01 1 145507705 145507705 A T RBM8A Missense_Mutation p.E13D 0.20 tolerated(0.22) benign(0.009) TCGA-55-A4DF-01 1 145601583 145601583 C T POLR3C Missense_Mutation p.E275K 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-55-A4DF-01 1 146756081 146756099 ACAGAAAATCATTTGAACA - CHD1L Frame_Shift_Del p.R589Wfs*2 0.25 TCGA-55-A4DF-01 1 150131068 150131068 G A PLEKHO1 Missense_Mutation p.D194N 0.12 tolerated(0.08) possibly_damaging(0.628) TCGA-55-A4DF-01 1 150689612 150689612 A C HORMAD1 Splice_Site p.X60_splice 0.39 TCGA-55-A4DF-01 1 151237983 151237983 C T PSMD4 Silent p.I184I 0.10 TCGA-55-A4DF-01 1 151238026 151238026 C G PSMD4 Missense_Mutation p.L199V 0.09 tolerated(0.51) benign(0.02) TCGA-55-A4DF-01 1 151278794 151278794 C T PI4KB Missense_Mutation p.D422N 0.24 tolerated(0.28) benign(0.002) TCGA-55-A4DF-01 1 153004834 153004834 C T SPRR1B Nonsense_Mutation p.Q5* 0.18 TCGA-55-A4DF-01 1 153782715 153782715 C A GATAD2B Nonsense_Mutation p.E574* 0.12 TCGA-55-A4DF-01 1 154543749 154543749 C G CHRNB2 Missense_Mutation p.I150M 0.13 deleterious(0) probably_damaging(0.998) TCGA-55-A4DF-01 1 154571062 154571062 C G ADAR Splice_Site p.X534_splice 0.10 TCGA-55-A4DF-01 1 154940681 154940681 G A SHC1 Missense_Mutation p.P268L 0.25 deleterious(0.03) benign(0.236) TCGA-55-A4DF-01 1 154940682 154940682 G A SHC1 Missense_Mutation p.P268S 0.25 deleterious(0.03) benign(0.18) TCGA-55-A4DF-01 1 155001760 155001760 A G DCST2 Missense_Mutation p.W431R 0.25 deleterious(0) probably_damaging(0.999) TCGA-55-A4DF-01 1 155154467 155154467 G A TRIM46 Silent p.L576L 0.26 TCGA-55-A4DF-01 1 155735072 155735072 C G GON4L Missense_Mutation p.D1398H 0.11 tolerated_low_confidence(0.07) possibly_damaging(0.452) TCGA-55-A4DF-01 1 156565457 156565457 C T GPATCH4 Missense_Mutation p.E226K 0.15 deleterious(0.05) benign(0.02) TCGA-55-A4DF-01 1 156641895 156641895 C A NES Missense_Mutation p.E695D 0.16 deleterious(0.04) benign(0.009) TCGA-55-A4DF-01 1 156823985 156823985 C G INSRR Missense_Mutation p.E66Q 0.12 tolerated(0.07) possibly_damaging(0.7) TCGA-55-A4DF-01 1 158326316 158326316 C A CD1E Silent p.I311I 0.17 TCGA-55-A4DF-01 1 158912050 158912050 C G PYHIN1 Missense_Mutation p.S288C 0.26 tolerated(0.05) probably_damaging(0.969) TCGA-55-A4DF-01 1 161479719 161479719 G A FCGR2A Silent p.Q158Q 0.11 TCGA-55-A4DF-01 1 161496321 161496321 G T HSPA6 Missense_Mutation p.G625C 0.18 deleterious_low_confidence(0.03) benign(0.009) TCGA-55-A4DF-01 1 161496322 161496322 G T HSPA6 Missense_Mutation p.G625V 0.19 deleterious_low_confidence(0.02) benign(0.067) TCGA-55-A4DF-01 1 161512854 161512854 C G FCGR3A Missense_Mutation p.R274T 0.10 tolerated(0.53) benign(0.098) TCGA-55-A4DF-01 1 161726677 161726677 G C DUSP12 Missense_Mutation p.K321N 0.21 deleterious(0.02) probably_damaging(0.96) TCGA-55-A4DF-01 1 162740292 162740292 G A DDR2 Silent p.E498E 0.20 TCGA-55-A4DF-01 1 16458248 16458248 C T EPHA2 Missense_Mutation p.E815K 0.27 deleterious(0) probably_damaging(0.999) TCGA-55-A4DF-01 1 16458615 16458615 C T EPHA2 Missense_Mutation p.D757N 0.17 deleterious(0.01) probably_damaging(1) TCGA-55-A4DF-01 1 16458921 16458921 C T EPHA2 Missense_Mutation p.M689I 0.18 deleterious(0) possibly_damaging(0.802) TCGA-55-A4DF-01 1 16785432 16785432 C T NECAP2 Missense_Mutation p.H255Y 0.14 deleterious_low_confidence(0.02) benign(0.008) TCGA-55-A4DF-01 1 171083259 171083259 G C FMO3 Missense_Mutation p.E314Q 0.10 tolerated(0.08) benign(0.361) TCGA-55-A4DF-01 1 173616051 173616051 C G ANKRD45 Missense_Mutation p.E144Q 0.27 deleterious(0.01) possibly_damaging(0.688) TCGA-55-A4DF-01 1 17531782 17531782 G A PADI1 Missense_Mutation p.E24K 0.16 tolerated(0.06) benign(0.023) TCGA-55-A4DF-01 1 17662704 17662704 A G PADI4 Missense_Mutation p.R131G 0.45 tolerated(0.3) benign(0.015) TCGA-55-A4DF-01 1 182544409 182544409 C T RNASEL 3'UTR 0.10 TCGA-55-A4DF-01 1 182569352 182569352 C A RGS16 3'UTR 0.33 TCGA-55-A4DF-01 1 183100491 183100491 G C LAMC1 Missense_Mutation p.E1182Q 0.11 deleterious(0.05) probably_damaging(0.998) TCGA-55-A4DF-01 1 183938476 183938476 G C COLGALT2 Missense_Mutation p.F253L 0.16 deleterious(0) probably_damaging(0.936) TCGA-55-A4DF-01 1 184675899 184675899 G A EDEM3 Missense_Mutation p.S694L 0.12 tolerated(0.08) benign(0.41) TCGA-55-A4DF-01 1 186289450 186289450 G C TPR Missense_Mutation p.Q2188E 0.15 possibly_damaging(0.755) TCGA-55-A4DF-01 1 186823433 186823433 G C PLA2G4A 5'UTR 0.19 TCGA-55-A4DF-01 1 19018358 19018358 G C PAX7 Missense_Mutation p.E233Q 0.22 deleterious(0.01) benign(0.084) TCGA-55-A4DF-01 1 19180912 19180912 C T TAS1R2 Missense_Mutation p.S351N 0.57 tolerated(1) benign(0.002) TCGA-55-A4DF-01 1 193065773 193065773 C T GLRX2 Silent p.K160K 0.22 TCGA-55-A4DF-01 1 19611578 19611578 C T AKR7A3 Missense_Mutation p.E180K 0.11 deleterious(0) probably_damaging(0.998) TCGA-55-A4DF-01 1 201061158 201061158 G T CACNA1S Silent p.V161V 0.09 TCGA-55-A4DF-01 1 202304862 202304862 C G UBE2T Silent p.L7L 0.08 TCGA-55-A4DF-01 1 202880184 202880184 C G KLHL12 Missense_Mutation p.E239Q 0.33 tolerated(0.11) benign(0.013) TCGA-55-A4DF-01 1 204095239 204095239 G C SOX13 Missense_Mutation p.E616Q 0.25 deleterious(0) probably_damaging(0.997) TCGA-55-A4DF-01 1 204110462 204110462 G A ETNK2 Silent p.I255I 0.26 TCGA-55-A4DF-01 1 206858719 206858719 A C MAPKAPK2 Missense_Mutation p.K49Q 0.16 tolerated(0.38) benign(0.017) TCGA-55-A4DF-01 1 207103738 207103738 C T PIGR Silent p.E740E 0.25 TCGA-55-A4DF-01 1 213189109 213189109 A C ANGEL2 5'UTR 0.29 TCGA-55-A4DF-01 1 215297988 215297988 G T KCNK2 Missense_Mutation p.A124S 0.26 deleterious(0.04) possibly_damaging(0.73) TCGA-55-A4DF-01 1 216172363 216172363 G T USH2A Missense_Mutation p.R2175S 0.16 benign(0.06) TCGA-55-A4DF-01 1 216348687 216348687 G A USH2A Silent p.L1512L 0.11 TCGA-55-A4DF-01 1 220441001 220441001 A G RAB3GAP2 Intron 0.24 TCGA-55-A4DF-01 1 22074697 22074697 C G USP48 Missense_Mutation p.R281T 0.10 deleterious(0) probably_damaging(0.984) TCGA-55-A4DF-01 1 222715361 222715361 G C HHIPL2 Missense_Mutation p.Q371E 0.23 deleterious(0.01) benign(0.092) TCGA-55-A4DF-01 1 222833604 222833604 G A MIA3 Silent p.V1687V 0.13 TCGA-55-A4DF-01 1 22927502 22927502 C A EPHA8 Missense_Mutation p.R884S 0.17 tolerated(0.06) possibly_damaging(0.904) TCGA-55-A4DF-01 1 22987352 22987352 G C C1QB Missense_Mutation p.D79H 0.14 deleterious(0) probably_damaging(0.946) TCGA-55-A4DF-01 1 230390976 230390976 G A GALNT2 Missense_Mutation p.R341H 0.13 deleterious(0) probably_damaging(0.99) TCGA-55-A4DF-01 1 231700429 231700429 G C TSNAX Silent p.V217V 0.10 TCGA-55-A4DF-01 1 232575095 232575095 C T SIPA1L2 Missense_Mutation p.D1264N 0.12 deleterious(0) possibly_damaging(0.703) TCGA-55-A4DF-01 1 233231528 233231528 C T PCNXL2 Missense_Mutation p.V1307M 0.08 deleterious(0) probably_damaging(0.962) TCGA-55-A4DF-01 1 235345872 235345872 C G ARID4B Missense_Mutation p.V788L 0.20 tolerated_low_confidence(0.12) benign(0.01) TCGA-55-A4DF-01 1 235388081 235388081 C T ARID4B Missense_Mutation p.E303K 0.11 tolerated(0.08) probably_damaging(0.991) TCGA-55-A4DF-01 1 237947054 237947054 C G RYR2 Silent p.L4014L 0.16 TCGA-55-A4DF-01 1 23885495 23885495 G A ID3 Missense_Mutation p.P106S 0.14 tolerated(1) benign(0) TCGA-55-A4DF-01 1 240371456 240371456 G A FMN2 Missense_Mutation p.G1115E 0.14 unknown(0) TCGA-55-A4DF-01 1 242042251 242042251 A G EXO1 Missense_Mutation p.H572R 0.30 tolerated(0.54) benign(0.01) TCGA-55-A4DF-01 1 245027132 245027132 C T HNRNPU Missense_Mutation p.E160K 0.28 tolerated_low_confidence(0.14) benign(0.292) TCGA-55-A4DF-01 1 2450626 2450626 C T PANK4 Missense_Mutation p.V331M 0.32 tolerated(0.08) possibly_damaging(0.667) TCGA-55-A4DF-01 1 247902634 247902634 G T OR14K1 Missense_Mutation p.V240L 0.18 tolerated(1) benign(0.002) TCGA-55-A4DF-01 1 32712909 32712909 C T FAM167B 5'UTR 0.31 TCGA-55-A4DF-01 1 33237475 33237475 C T KIAA1522 Missense_Mutation p.P899S 0.22 tolerated(0.31) benign(0.37) TCGA-55-A4DF-01 1 33820487 33820487 G C PHC2 Missense_Mutation p.F448L 0.28 tolerated(0.47) benign(0.007) TCGA-55-A4DF-01 1 34254302 34254302 G A CSMD2 Missense_Mutation p.T481I 0.29 deleterious(0) possibly_damaging(0.832) TCGA-55-A4DF-01 1 34666447 34666447 A G C1orf94 Missense_Mutation p.K362E 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-55-A4DF-01 1 35260568 35260568 C T GJA4 Nonsense_Mutation p.Q252* 0.09 TCGA-55-A4DF-01 1 35320754 35320754 C A SMIM12 3'UTR 0.30 TCGA-55-A4DF-01 1 3688181 3688181 C T CCDC27 3'UTR 0.17 TCGA-55-A4DF-01 1 36926872 36926872 G T MRPS15 Missense_Mutation p.A98D 0.18 deleterious(0) possibly_damaging(0.801) TCGA-55-A4DF-01 1 38345797 38345797 T C INPP5B Missense_Mutation p.T501A 0.21 deleterious(0) possibly_damaging(0.903) TCGA-55-A4DF-01 1 40627275 40627275 C G RLF Silent p.V68V 0.13 TCGA-55-A4DF-01 1 41463092 41463092 C G CTPS1 Missense_Mutation p.S300C 0.26 deleterious(0.03) benign(0.028) TCGA-55-A4DF-01 1 43909067 43909067 T A SZT2 Missense_Mutation p.H2791Q 0.31 deleterious(0) probably_damaging(0.996) TCGA-55-A4DF-01 1 44447397 44447397 C T B4GALT2 Missense_Mutation p.P146L 0.29 tolerated(0.07) benign(0.192) TCGA-55-A4DF-01 1 46182672 46182672 C T IPP Missense_Mutation p.E402K 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-55-A4DF-01 1 46500717 46500717 C T MAST2 Missense_Mutation p.S1459F 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.836) TCGA-55-A4DF-01 1 48713202 48713202 G A SLC5A9 Missense_Mutation p.G703D 0.23 deleterious(0.01) probably_damaging(0.973) TCGA-55-A4DF-01 1 48713203 48713203 C T SLC5A9 Silent p.G703G 0.23 TCGA-55-A4DF-01 1 51787490 51787490 C T TTC39A Missense_Mutation p.E21K 0.19 tolerated(0.92) benign(0.002) TCGA-55-A4DF-01 1 51930943 51930943 C G EPS15 Missense_Mutation p.W122S 0.27 deleterious(0) probably_damaging(0.997) TCGA-55-A4DF-01 1 53716438 53716438 C T LRP8 Missense_Mutation p.R867K 0.26 tolerated(0.1) probably_damaging(0.992) TCGA-55-A4DF-01 1 55545311 55545311 C T USP24 Missense_Mutation p.R2367Q 0.14 tolerated(0.37) benign(0.002) TCGA-55-A4DF-01 1 6154523 6154523 G A KCNAB2 Missense_Mutation p.R237H 0.20 deleterious(0) possibly_damaging(0.677) TCGA-55-A4DF-01 1 70505426 70505426 G T LRRC7 Missense_Mutation p.D1269Y 0.45 deleterious(0) probably_damaging(0.999) TCGA-55-A4DF-01 1 74575185 74575185 C T LRRIQ3 Missense_Mutation p.E254K 0.39 tolerated(0.23) benign(0.017) TCGA-55-A4DF-01 1 75175818 75175818 G A CRYZ Silent p.F198F 0.18 TCGA-55-A4DF-01 1 79383318 79383318 C G ELTD1 Splice_Site p.X583_splice 0.37 TCGA-55-A4DF-01 1 87025745 87025745 A G CLCA4 Missense_Mutation p.N97S 0.08 tolerated(1) benign(0.004) TCGA-55-A4DF-01 1 89476650 89476650 G C GBP3 Silent p.L433L 0.57 TCGA-55-A4DF-01 1 92944231 92944231 G A GFI1 Missense_Mutation p.S335L 0.13 deleterious(0) probably_damaging(0.992) TCGA-55-A4DF-01 1 9322131 9322131 C G H6PD Missense_Mutation p.F253L 0.13 deleterious(0) probably_damaging(0.991) TCGA-55-A4DF-01 20 10603872 10603872 G T SLX4IP Nonsense_Mutation p.E358* 0.11 TCGA-55-A4DF-01 20 13695576 13695576 G C ESF1 Missense_Mutation p.S834C 0.22 deleterious(0) probably_damaging(0.996) TCGA-55-A4DF-01 20 18794815 18794815 T - SCP2D1 Frame_Shift_Del p.L120Wfs*4 0.21 TCGA-55-A4DF-01 20 20023161 20023161 C A CRNKL1 Splice_Site p.X486_splice 0.26 TCGA-55-A4DF-01 20 21376830 21376830 G C NKX2-4 Missense_Mutation p.L262V 0.92 tolerated(0.52) benign(0.065) TCGA-55-A4DF-01 20 21376831 21376831 G T NKX2-4 Silent p.G261G 0.92 TCGA-55-A4DF-01 20 2945624 2945624 C T PTPRA Missense_Mutation p.T64I 0.33 tolerated_low_confidence(0.14) benign(0.299) TCGA-55-A4DF-01 20 30365413 30365413 C G TPX2 Missense_Mutation p.S285C 0.16 deleterious(0) probably_damaging(0.99) TCGA-55-A4DF-01 20 40713347 40713347 C A PTPRT Nonsense_Mutation p.E1371* 0.35 TCGA-55-A4DF-01 20 42876041 42876041 G A GDAP1L1 Missense_Mutation p.D23N 0.18 deleterious_low_confidence(0.04) benign(0.005) TCGA-55-A4DF-01 20 43994252 43994252 C G SYS1 Intron 0.07 TCGA-55-A4DF-01 20 46318956 46318956 G C SULF2 Silent p.L217L 0.07 TCGA-55-A4DF-01 20 47706076 47706076 A T CSE1L Missense_Mutation p.E658D 0.33 deleterious(0.01) probably_damaging(0.979) TCGA-55-A4DF-01 20 49562398 49562398 C T DPM1 Missense_Mutation p.D120N 0.25 deleterious(0) probably_damaging(0.997) TCGA-55-A4DF-01 20 50305646 50305646 C G ATP9A Silent p.L252L 0.09 TCGA-55-A4DF-01 20 55033417 55033417 C T CASS4 Nonsense_Mutation p.Q659* 0.10 TCGA-55-A4DF-01 20 55204497 55204497 G A TFAP2C 5'UTR 0.31 TCGA-55-A4DF-01 20 58349494 58349494 G C PHACTR3 Missense_Mutation p.D375H 0.25 tolerated(0.35) possibly_damaging(0.741) TCGA-55-A4DF-01 20 5903054 5903054 C A CHGB Missense_Mutation p.D88E 0.21 tolerated(0.12) possibly_damaging(0.739) TCGA-55-A4DF-01 20 60897353 60897353 G C LAMA5 Nonsense_Mutation p.Y2106* 0.14 TCGA-55-A4DF-01 20 60913346 60913346 G A LAMA5 Silent p.F566F 0.20 TCGA-55-A4DF-01 20 61473207 61473207 C G TCFL5 3'UTR 0.32 TCGA-55-A4DF-01 20 61982019 61982019 G C CHRNA4 Missense_Mutation p.I248M 0.05 deleterious(0) benign(0.172) TCGA-55-A4DF-01 20 62505104 62505104 C G TPD52L2 Silent p.L83L 0.24 TCGA-55-A4DF-01 20 62698291 62698291 C T TCEA2 Silent p.V53V 0.08 TCGA-55-A4DF-01 20 744139 744139 C A SLC52A3 Intron 0.25 TCGA-55-A4DF-01 21 11038883 11038883 G A BAGE2 RNA 0.11 TCGA-55-A4DF-01 21 35208839 35208839 G A ITSN1 Silent p.E1188E 0.15 TCGA-55-A4DF-01 21 43240475 43240475 C G PRDM15 Missense_Mutation p.E1072Q 0.12 deleterious(0.05) probably_damaging(0.985) TCGA-55-A4DF-01 21 43243677 43243677 G T PRDM15 Missense_Mutation p.F952L 0.14 deleterious(0.03) probably_damaging(0.982) TCGA-55-A4DF-01 21 48080771 48080771 C G PRMT2 Nonsense_Mutation p.S286* 0.14 TCGA-55-A4DF-01 22 16267062 16267062 G A POTEH Missense_Mutation p.H463Y 0.06 deleterious(0.02) benign(0.424) TCGA-55-A4DF-01 22 24726227 24726227 G A SPECC1L Missense_Mutation p.E742K 0.23 deleterious(0.01) probably_damaging(0.993) TCGA-55-A4DF-01 22 26995588 26995588 C T CRYBB1 Missense_Mutation p.E209K 0.14 deleterious(0) probably_damaging(0.964) TCGA-55-A4DF-01 22 29726499 29726499 C G AP1B1 Missense_Mutation p.Q878H 0.07 deleterious(0.01) possibly_damaging(0.906) TCGA-55-A4DF-01 22 30218423 30218423 C G ASCC2 Missense_Mutation p.E148Q 0.21 deleterious(0.01) benign(0.045) TCGA-55-A4DF-01 22 37769410 37769410 T C ELFN2 Missense_Mutation p.D722G 0.56 tolerated(0.54) possibly_damaging(0.573) TCGA-55-A4DF-01 22 39066838 39066838 G A CBY1 Intron 0.11 TCGA-55-A4DF-01 22 39910284 39910284 C G MIEF1 Missense_Mutation p.L450V 0.18 deleterious(0) probably_damaging(0.998) TCGA-55-A4DF-01 22 40362110 40362110 C A GRAP2 Missense_Mutation p.S136Y 0.42 deleterious(0) probably_damaging(0.994) TCGA-55-A4DF-01 22 43950841 43950841 C G EFCAB6 Missense_Mutation p.E1186Q 0.15 tolerated(0.17) benign(0.378) TCGA-55-A4DF-01 22 44342696 44342696 G A PNPLA3 3'UTR 0.18 TCGA-55-A4DF-01 22 50636352 50636352 G A TRABD Missense_Mutation p.E258K 0.41 deleterious(0) probably_damaging(1) TCGA-55-A4DF-01 22 50689234 50689234 C G HDAC10 Missense_Mutation p.E54Q 0.31 tolerated(0.06) probably_damaging(0.975) TCGA-55-A4DF-01 22 50962832 50962832 C T SCO2 Silent p.L3L 0.16 TCGA-55-A4DF-01 22 50967981 50967981 T C TYMP Missense_Mutation p.D53G 0.45 deleterious(0) benign(0.016) TCGA-55-A4DF-01 2 108609540 108609540 G T SLC5A7 Silent p.L135L 0.17 TCGA-55-A4DF-01 2 108626771 108626771 G A SLC5A7 Silent p.T399T 0.17 TCGA-55-A4DF-01 2 109381580 109381580 A T RANBP2 Missense_Mutation p.S1529C 0.23 deleterious(0.04) probably_damaging(0.921) TCGA-55-A4DF-01 2 113993030 113993030 T G PAX8 Missense_Mutation p.N343T 0.12 tolerated(0.29) benign(0.266) TCGA-55-A4DF-01 2 116283510 116283510 G T DPP10 Missense_Mutation p.D139Y 0.48 deleterious(0) probably_damaging(0.998) TCGA-55-A4DF-01 2 119750718 119750718 T C MARCO Missense_Mutation p.V424A 0.36 tolerated(0.07) unknown(0) TCGA-55-A4DF-01 2 120712825 120712825 G T PTPN4 Missense_Mutation p.D636Y 0.16 deleterious(0.02) benign(0.051) TCGA-55-A4DF-01 2 125192171 125192171 G T CNTNAP5 Nonsense_Mutation p.G214* 0.13 TCGA-55-A4DF-01 2 125192172 125192172 G T CNTNAP5 Missense_Mutation p.G214V 0.13 deleterious(0.01) possibly_damaging(0.776) TCGA-55-A4DF-01 2 128178938 128178938 C T PROC Silent p.L50L 0.35 TCGA-55-A4DF-01 2 131904221 131904221 C T PLEKHB2 Nonsense_Mutation p.Q190* 0.33 TCGA-55-A4DF-01 2 136562422 136562422 C G LCT Missense_Mutation p.G1460A 0.15 deleterious(0) probably_damaging(0.998) TCGA-55-A4DF-01 2 145147350 145147350 C T ZEB2 Missense_Mutation p.E1105K 0.12 deleterious(0.01) possibly_damaging(0.771) TCGA-55-A4DF-01 2 157413936 157413936 G T GPD2 Missense_Mutation p.S336I 0.31 deleterious(0) probably_damaging(0.999) TCGA-55-A4DF-01 2 160585678 160585678 G C MARCH7 Missense_Mutation p.E49Q 0.18 tolerated(0.38) possibly_damaging(0.533) TCGA-55-A4DF-01 2 160710154 160710154 C T LY75-CD302 Missense_Mutation p.D884N 0.09 tolerated(0.34) benign(0) TCGA-55-A4DF-01 2 16082548 16082548 C T MYCN Missense_Mutation p.S121F 0.15 deleterious(0) probably_damaging(0.99) TCGA-55-A4DF-01 2 162834252 162834252 A G SLC4A10 3'UTR 0.17 TCGA-55-A4DF-01 2 164466371 164466371 C T FIGN Silent p.A657A 0.18 TCGA-55-A4DF-01 2 166211009 166211009 G A SCN2A Missense_Mutation p.S1076N 0.25 tolerated(0.13) benign(0.438) TCGA-55-A4DF-01 2 166901645 166901645 C T SCN1A Missense_Mutation p.E524K 0.11 tolerated(0.06) possibly_damaging(0.798) TCGA-55-A4DF-01 2 170489726 170489726 C T PPIG Missense_Mutation p.S329F 0.32 deleterious(0.01) unknown(0) TCGA-55-A4DF-01 2 170665049 170665049 A C SSB Missense_Mutation p.K204N 0.38 deleterious(0) possibly_damaging(0.847) TCGA-55-A4DF-01 2 179416785 179416785 C A TTN Missense_Mutation p.R30281I 0.17 TCGA-55-A4DF-01 2 179535023 179535023 C G TTN Splice_Site p.X11770_splice 0.30 TCGA-55-A4DF-01 2 179596612 179596612 G T TTN Missense_Mutation p.P5664T 0.21 TCGA-55-A4DF-01 2 182409477 182409477 G T CERKL Silent p.R465R 0.39 TCGA-55-A4DF-01 2 183989210 183989210 C G NUP35 Missense_Mutation p.Q9E 0.08 tolerated_low_confidence(0.66) benign(0.005) TCGA-55-A4DF-01 2 189929315 189929315 G A COL5A2 Missense_Mutation p.R562C 0.30 probably_damaging(0.998) TCGA-55-A4DF-01 2 198498508 198498508 C T RFTN2 Missense_Mutation p.E218K 0.06 tolerated(0.11) possibly_damaging(0.46) TCGA-55-A4DF-01 2 203155928 203155928 G A NOP58 Missense_Mutation p.E239K 0.21 deleterious(0.05) possibly_damaging(0.792) TCGA-55-A4DF-01 2 206592651 206592651 G T NRP2 Missense_Mutation p.A343S 0.43 tolerated(0.06) probably_damaging(1) TCGA-55-A4DF-01 2 216230280 216230280 C T FN1 Missense_Mutation p.M2364I 0.34 deleterious(0.02) benign(0.338) TCGA-55-A4DF-01 2 217142540 217142540 G C MARCH4 Silent p.A240A 0.26 TCGA-55-A4DF-01 2 219252294 219252294 G C SLC11A1 Missense_Mutation p.R193P 0.13 deleterious(0) probably_damaging(0.997) TCGA-55-A4DF-01 2 222322704 222322704 G T EPHA4 Nonsense_Mutation p.S442* 0.09 TCGA-55-A4DF-01 2 225670240 225670240 G A DOCK10 Missense_Mutation p.S1274L 0.20 deleterious(0.01) benign(0.345) TCGA-55-A4DF-01 2 228228710 228228710 G T TM4SF20 Silent p.S140S 0.17 TCGA-55-A4DF-01 2 228996699 228996699 C G SPHKAP Missense_Mutation p.K45N 0.16 deleterious(0) possibly_damaging(0.703) TCGA-55-A4DF-01 2 231090571 231090571 G T SP140 Missense_Mutation p.Q4H 0.10 tolerated_low_confidence(0.12) unknown(0) TCGA-55-A4DF-01 2 232390095 232390095 G A NMUR1 Missense_Mutation p.H314Y 0.22 deleterious(0) probably_damaging(1) TCGA-55-A4DF-01 2 234581152 234581152 C A UGT1A9 Missense_Mutation p.P191H 0.18 deleterious(0) probably_damaging(1) TCGA-55-A4DF-01 2 235950424 235950424 C G SH3BP4 Missense_Mutation p.I337M 0.10 deleterious(0) probably_damaging(0.961) TCGA-55-A4DF-01 2 236715888 236715888 G C AGAP1 Silent p.R321R 0.14 TCGA-55-A4DF-01 2 238462307 238462307 G C MLPH 3'UTR 0.17 TCGA-55-A4DF-01 2 240961724 240961724 G A NDUFA10 Missense_Mutation p.R37C 0.31 deleterious(0) possibly_damaging(0.677) TCGA-55-A4DF-01 2 241465252 241465252 G A ANKMY1 Silent p.N306N 0.25 TCGA-55-A4DF-01 2 242122202 242122202 C T PPP1R7 Silent p.S349S 0.16 TCGA-55-A4DF-01 2 242434956 242434956 G A STK25 3'UTR 0.27 TCGA-55-A4DF-01 2 24244746 24244746 G A MFSD2B Missense_Mutation p.G267D 0.10 tolerated(0.26) possibly_damaging(0.783) TCGA-55-A4DF-01 2 24974952 24974952 C G NCOA1 Missense_Mutation p.Q1270E 0.17 tolerated(0.07) benign(0.022) TCGA-55-A4DF-01 2 26536747 26536747 G C GPR113 Missense_Mutation p.S386C 0.17 deleterious(0.04) possibly_damaging(0.576) TCGA-55-A4DF-01 2 27306102 27306102 G C EMILIN1 Missense_Mutation p.E555Q 0.14 possibly_damaging(0.608) TCGA-55-A4DF-01 2 33518226 33518226 G C LTBP1 Splice_Site p.X1038_splice 0.22 TCGA-55-A4DF-01 2 42991239 42991239 G C OXER1 Silent p.L27L 0.08 TCGA-55-A4DF-01 2 44016850 44016850 G C DYNC2LI1 Missense_Mutation p.D104H 0.16 tolerated(0.07) benign(0.044) TCGA-55-A4DF-01 2 50699459 50699459 C T NRXN1 Missense_Mutation p.G1114E 0.13 deleterious(0) probably_damaging(0.995) TCGA-55-A4DF-01 2 51255089 51255089 G A NRXN1 Missense_Mutation p.P108L 0.16 tolerated(0.34) benign(0.002) TCGA-55-A4DF-01 2 72359593 72359593 G A CYP26B1 Silent p.F434F 0.38 TCGA-55-A4DF-01 2 73118658 73118658 G C SPR Missense_Mutation p.D260H 0.16 deleterious(0) possibly_damaging(0.846) TCGA-55-A4DF-01 2 74725193 74725193 G A LBX2 Missense_Mutation p.S149L 0.14 deleterious(0.03) probably_damaging(0.998) TCGA-55-A4DF-01 2 74725252 74725252 G C LBX2 Missense_Mutation p.F129L 0.15 deleterious(0) probably_damaging(0.996) TCGA-55-A4DF-01 2 77746575 77746575 G C LRRTM4 Silent p.L140L 0.08 TCGA-55-A4DF-01 2 79348038 79348038 G T REG1A Silent p.L17L 0.46 TCGA-55-A4DF-01 2 85554205 85554205 G A TGOLN2 Missense_Mutation p.P217L 0.18 tolerated(0.06) probably_damaging(0.991) TCGA-55-A4DF-01 2 85981390 85981390 C G ATOH8 Silent p.L26L 0.10 TCGA-55-A4DF-01 2 89399567 89399567 G A IGKV1-16 Missense_Mutation p.R46W 0.20 deleterious(0.04) benign(0.045) TCGA-55-A4DF-01 2 90199000 90199000 G T IGKV1D-12 Missense_Mutation p.W54L 0.28 tolerated(0.26) benign(0.004) TCGA-55-A4DF-01 2 99722065 99722065 C G TSGA10 Missense_Mutation p.E102D 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-55-A4DF-01 3 10219676 10219676 C G IRAK2 Silent p.L83L 0.38 TCGA-55-A4DF-01 3 113378239 113378239 C G KIAA2018 Missense_Mutation p.D764H 0.31 possibly_damaging(0.8) TCGA-55-A4DF-01 3 115395288 115395288 C A GAP43 Silent p.S189S 0.51 TCGA-55-A4DF-01 3 119348297 119348297 G A PLA1A Silent p.L451L 0.35 TCGA-55-A4DF-01 3 121412826 121412826 G A GOLGB1 Nonsense_Mutation p.Q2182* 0.45 TCGA-55-A4DF-01 3 127783818 127783818 C T SEC61A1 Missense_Mutation p.L239F 0.14 deleterious(0.02) probably_damaging(0.958) TCGA-55-A4DF-01 3 128697005 128697005 G A KIAA1257 Nonsense_Mutation p.Q231* 0.21 TCGA-55-A4DF-01 3 128984620 128984620 G A COPG1 Missense_Mutation p.E485K 0.12 deleterious(0.01) benign(0.388) TCGA-55-A4DF-01 3 133483100 133483100 C T TF Silent p.V426V 0.11 TCGA-55-A4DF-01 3 135721207 135721207 G A PPP2R3A Silent p.L289L 0.41 TCGA-55-A4DF-01 3 137717751 137717751 C T CLDN18 Missense_Mutation p.S14L 0.10 deleterious(0.01) possibly_damaging(0.691) TCGA-55-A4DF-01 3 137822885 137822885 G C DZIP1L 5'UTR 0.17 TCGA-55-A4DF-01 3 138739309 138739309 C A PRR23B Silent p.A65A 0.24 TCGA-55-A4DF-01 3 140692563 140692563 G A SLC25A36 Missense_Mutation p.R153H 0.09 tolerated(0.08) benign(0.022) TCGA-55-A4DF-01 3 141497455 141497455 T C GRK7 Missense_Mutation p.V110A 0.28 tolerated(0.38) benign(0.033) TCGA-55-A4DF-01 3 141896419 141896419 C A GK5 Splice_Site p.X350_splice 0.08 TCGA-55-A4DF-01 3 142185372 142185372 C G ATR Missense_Mutation p.D2231H 0.08 deleterious(0.02) possibly_damaging(0.728) TCGA-55-A4DF-01 3 142548675 142548675 C T PCOLCE2 Missense_Mutation p.E242K 0.07 tolerated(0.07) benign(0.142) TCGA-55-A4DF-01 3 148597633 148597633 G A CPA3 Missense_Mutation p.R178Q 0.06 deleterious(0.03) benign(0.34) TCGA-55-A4DF-01 3 155203286 155203286 G A PLCH1 Nonsense_Mutation p.Q953* 0.06 TCGA-55-A4DF-01 3 155860909 155860909 C A KCNAB1 Intron 0.14 TCGA-55-A4DF-01 3 167189502 167189502 G A SERPINI2 Missense_Mutation p.H41Y 0.05 tolerated(0.09) benign(0.424) TCGA-55-A4DF-01 3 169496638 169496638 G A MYNN Missense_Mutation p.D117N 0.07 tolerated(0.24) benign(0.315) TCGA-55-A4DF-01 3 169569483 169569483 C A LRRC31 Missense_Mutation p.R361S 0.33 tolerated(0.05) possibly_damaging(0.688) TCGA-55-A4DF-01 3 170078703 170078703 C G SKIL Nonsense_Mutation p.S195* 0.05 TCGA-55-A4DF-01 3 172163133 172163133 C A GHSR Missense_Mutation p.V307L 0.17 tolerated(0.11) benign(0.055) TCGA-55-A4DF-01 3 172476767 172476767 C T ECT2 Intron 0.12 TCGA-55-A4DF-01 3 183899826 183899826 G A AP2M1 Silent p.Q318Q 0.10 TCGA-55-A4DF-01 3 183905743 183905743 G C ABCF3 Missense_Mutation p.E181Q 0.05 deleterious(0.02) possibly_damaging(0.701) TCGA-55-A4DF-01 3 183978007 183978007 C G CAMK2N2 Missense_Mutation p.E60Q 0.06 deleterious_low_confidence(0.02) probably_damaging(0.919) TCGA-55-A4DF-01 3 183994696 183994696 G A ECE2 Missense_Mutation p.G166E 0.14 tolerated(0.85) benign(0.003) TCGA-55-A4DF-01 3 184049544 184049544 C G EIF4G1 Missense_Mutation p.S1482C 0.16 deleterious(0.03) probably_damaging(0.921) TCGA-55-A4DF-01 3 184090622 184090622 C T THPO Silent p.L247L 0.07 TCGA-55-A4DF-01 3 186360269 186360269 C G FETUB Missense_Mutation p.Q116E 0.33 deleterious(0) possibly_damaging(0.897) TCGA-55-A4DF-01 3 186838966 186838966 C T RPL39L Silent p.R41R 0.13 TCGA-55-A4DF-01 3 188477963 188477963 C G LPP Missense_Mutation p.Q435E 0.07 deleterious(0) possibly_damaging(0.728) TCGA-55-A4DF-01 3 192516720 192516720 G C MB21D2 Missense_Mutation p.Q311E 0.07 tolerated(0.19) possibly_damaging(0.569) TCGA-55-A4DF-01 3 194152480 194152480 G C ATP13A3 Missense_Mutation p.T796R 0.11 tolerated(0.4) benign(0.006) TCGA-55-A4DF-01 3 195474020 195474020 G C MUC4 3'UTR 0.14 TCGA-55-A4DF-01 3 195516607 195516607 G C MUC4 Nonsense_Mutation p.S615* 0.27 TCGA-55-A4DF-01 3 196675308 196675308 C T PIGZ Missense_Mutation p.D154N 0.20 tolerated(0.18) benign(0.247) TCGA-55-A4DF-01 3 28562509 28562509 A C ZCWPW2 Missense_Mutation p.K271Q 0.42 deleterious(0.03) possibly_damaging(0.801) TCGA-55-A4DF-01 3 33415414 33415414 G T FBXL2 Splice_Site p.X219_splice 0.26 TCGA-55-A4DF-01 3 38921572 38921572 C G SCN11A Missense_Mutation p.E1088Q 0.17 tolerated(0.13) benign(0.008) TCGA-55-A4DF-01 3 44955193 44955193 G A TGM4 Silent p.Q677Q 0.15 TCGA-55-A4DF-01 3 46563057 46563057 C G LRRC2 Missense_Mutation p.D341H 0.16 tolerated(0.05) possibly_damaging(0.907) TCGA-55-A4DF-01 3 46719792 46719792 C T ALS2CL Missense_Mutation p.D572N 0.19 tolerated(0.64) benign(0.034) TCGA-55-A4DF-01 3 47129630 47129630 C G SETD2 Missense_Mutation p.Q1750H 0.09 tolerated(0.1) probably_damaging(0.997) TCGA-55-A4DF-01 3 47288923 47288923 C T KIF9 Silent p.Q391Q 0.21 TCGA-55-A4DF-01 3 48266846 48266846 G A CAMP Missense_Mutation p.E152K 0.05 tolerated(1) benign(0.001) TCGA-55-A4DF-01 3 48507854 48507854 G A TREX1 5'UTR 0.20 TCGA-55-A4DF-01 3 49394997 49394997 C A GPX1 Missense_Mutation p.D146Y 0.17 deleterious(0) probably_damaging(0.994) TCGA-55-A4DF-01 3 49395531 49395531 C A GPX1 Nonsense_Mutation p.E61* 0.25 TCGA-55-A4DF-01 3 50223757 50223757 C T SEMA3F Nonsense_Mutation p.Q597* 0.38 TCGA-55-A4DF-01 3 62570962 62570962 G A CADPS Missense_Mutation p.S492L 0.20 deleterious(0) benign(0.307) TCGA-55-A4DF-01 3 73433871 73433871 C A PDZRN3 Missense_Mutation p.G616C 0.42 tolerated(0.05) possibly_damaging(0.597) TCGA-55-A4DF-01 3 77147171 77147171 G A ROBO2 Missense_Mutation p.R39H 0.26 tolerated(0.08) unknown(0) TCGA-55-A4DF-01 3 78766912 78766912 C A ROBO1 Splice_Site p.X260_splice 0.35 TCGA-55-A4DF-01 3 78766913 78766913 C A ROBO1 Nonsense_Mutation p.E260* 0.31 TCGA-55-A4DF-01 3 9767702 9767702 T C CPNE9 Silent p.S437S 0.46 TCGA-55-A4DF-01 4 103590134 103590134 C G MANBA Missense_Mutation p.E435Q 0.40 deleterious(0) probably_damaging(0.998) TCGA-55-A4DF-01 4 1244954 1244954 G A CTBP1 5'Flank 0.23 TCGA-55-A4DF-01 4 126372503 126372503 C T FAT4 Silent p.I3444I 0.21 TCGA-55-A4DF-01 4 156753033 156753033 C A ASIC5 Missense_Mutation p.D424Y 0.27 deleterious(0) probably_damaging(0.964) TCGA-55-A4DF-01 4 164247377 164247377 C T NPY1R Silent p.E110E 0.34 TCGA-55-A4DF-01 4 164393411 164393411 C G TKTL2 Missense_Mutation p.E492D 0.18 tolerated(0.06) benign(0.275) TCGA-55-A4DF-01 4 169208226 169208226 G T DDX60 Missense_Mutation p.L438I 0.12 deleterious(0.04) benign(0.32) TCGA-55-A4DF-01 4 26490891 26490891 C T CCKAR Missense_Mutation p.G110R 0.22 deleterious(0) probably_damaging(1) TCGA-55-A4DF-01 4 2831838 2831838 T A SH3BP2 Missense_Mutation p.L459Q 0.17 tolerated_low_confidence(0.14) possibly_damaging(0.714) TCGA-55-A4DF-01 4 2910239 2910239 C G ADD1 Intron 0.21 TCGA-55-A4DF-01 4 40244959 40244959 C G RHOH 5'UTR 0.19 TCGA-55-A4DF-01 4 41016038 41016038 C G APBB2 Missense_Mutation p.E133Q 0.34 tolerated(0.13) possibly_damaging(0.63) TCGA-55-A4DF-01 4 437796 437796 G A ZNF721 Nonsense_Mutation p.Q154* 0.08 TCGA-55-A4DF-01 4 46252586 46252586 G C GABRA2 Missense_Mutation p.N365K 0.40 tolerated(0.13) benign(0.273) TCGA-55-A4DF-01 4 47900019 47900019 C G NFXL1 Missense_Mutation p.R390P 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-55-A4DF-01 4 48853937 48853937 C T OCIAD1 Silent p.F164F 0.21 TCGA-55-A4DF-01 4 68530954 68530954 G C UBA6 Missense_Mutation p.H284D 0.22 tolerated(0.34) benign(0.008) TCGA-55-A4DF-01 4 76708341 76708341 G A USO1 Missense_Mutation p.D330N 0.37 deleterious(0.04) benign(0.287) TCGA-55-A4DF-01 4 861184 861184 G A GAK Missense_Mutation p.S811F 0.26 tolerated(0.53) benign(0.003) TCGA-55-A4DF-01 4 90857115 90857115 C A MMRN1 Missense_Mutation p.H762N 0.22 tolerated(1) probably_damaging(0.995) TCGA-55-A4DF-01 5 11111044 11111044 C T CTNND2 Missense_Mutation p.E797K 0.19 tolerated(0.07) benign(0.029) TCGA-55-A4DF-01 5 118485727 118485727 C T DMXL1 Missense_Mutation p.S1402F 0.17 deleterious(0.03) probably_damaging(1) TCGA-55-A4DF-01 5 126705633 126705633 C T MEGF10 Silent p.R117R 0.54 TCGA-55-A4DF-01 5 127624234 127624234 G C FBN2 Nonsense_Mutation p.S2218* 0.47 TCGA-55-A4DF-01 5 128956360 128956360 C T ADAMTS19 Missense_Mutation p.H504Y 0.11 tolerated(0.05) probably_damaging(0.928) TCGA-55-A4DF-01 5 131893034 131893034 G C RAD50 Missense_Mutation p.K6N 0.23 deleterious(0.01) probably_damaging(0.988) TCGA-55-A4DF-01 5 136324296 136324296 G A SPOCK1 Missense_Mutation p.S248F 0.15 deleterious(0) probably_damaging(0.999) TCGA-55-A4DF-01 5 138661057 138661057 C T MATR3 Intron 0.19 TCGA-55-A4DF-01 5 139217332 139217332 G C PSD2 Missense_Mutation p.K596N 0.19 deleterious(0) probably_damaging(0.997) TCGA-55-A4DF-01 5 140581600 140581600 C A PCDHB11 Nonsense_Mutation p.Y751* 0.47 TCGA-55-A4DF-01 5 140792799 140792799 G T PCDHGA10 Silent p.L19L 0.53 TCGA-55-A4DF-01 5 140800977 140800977 G A PCDHGA11 Silent p.A61A 0.48 TCGA-55-A4DF-01 5 140802744 140802744 C T PCDHGA11 Silent p.H650H 0.12 TCGA-55-A4DF-01 5 150095128 150095128 C G DCTN4 Missense_Mutation p.D397H 0.39 tolerated(0.06) benign(0.296) TCGA-55-A4DF-01 5 156917428 156917428 G T ADAM19 Silent p.A710A 0.22 TCGA-55-A4DF-01 5 156917429 156917429 G T ADAM19 Missense_Mutation p.A710D 0.22 tolerated(0.15) benign(0.376) TCGA-55-A4DF-01 5 167850751 167850751 C G WWC1 Silent p.G496G 0.53 TCGA-55-A4DF-01 5 24537492 24537492 C A CDH10 Missense_Mutation p.V175L 0.18 tolerated(0.14) possibly_damaging(0.72) TCGA-55-A4DF-01 5 26881413 26881413 C G CDH9 Silent p.S734S 0.28 TCGA-55-A4DF-01 5 33458763 33458763 C G TARS Missense_Mutation p.F392L 0.06 tolerated(0.19) benign(0.12) TCGA-55-A4DF-01 5 35644520 35644520 C G SPEF2 Missense_Mutation p.Q160E 0.12 tolerated(0.9) benign(0.386) TCGA-55-A4DF-01 5 38968063 38968063 C T RICTOR Missense_Mutation p.E348K 0.06 tolerated(0.06) probably_damaging(0.937) TCGA-55-A4DF-01 5 40936500 40936500 C A C7 Missense_Mutation p.A114D 0.22 tolerated(0.07) possibly_damaging(0.616) TCGA-55-A4DF-01 5 41009477 41009477 C G MROH2B Missense_Mutation p.E1109Q 0.09 tolerated(0.34) benign(0.018) TCGA-55-A4DF-01 5 41510525 41510525 C T PLCXD3 Splice_Site p.X35_splice 0.27 TCGA-55-A4DF-01 5 41510526 41510526 C A PLCXD3 Missense_Mutation p.G35W 0.26 deleterious(0.01) probably_damaging(1) TCGA-55-A4DF-01 5 54968510 54968510 C A SLC38A9 Nonsense_Mutation p.E43* 0.27 TCGA-55-A4DF-01 5 70818145 70818145 C G BDP1 Nonsense_Mutation p.S1674* 0.28 TCGA-55-A4DF-01 5 71495531 71495531 G T MAP1B Nonsense_Mutation p.E2117* 0.36 TCGA-55-A4DF-01 5 79285042 79285042 G C MTX3 Nonsense_Mutation p.S24* 0.11 TCGA-55-A4DF-01 5 79854785 79854785 C A ANKRD34B Missense_Mutation p.A352S 0.38 tolerated(0.56) benign(0.005) TCGA-55-A4DF-01 5 90079736 90079736 C T GPR98 Silent p.I4505I 0.14 TCGA-55-A4DF-01 6 100868681 100868681 A T SIM1 Silent p.T384T 0.49 TCGA-55-A4DF-01 6 106727584 106727584 C G ATG5 Missense_Mutation p.E144Q 0.12 tolerated(0.54) benign(0.403) TCGA-55-A4DF-01 6 110421661 110421661 C T WASF1 3'UTR 0.62 TCGA-55-A4DF-01 6 110777848 110777848 G A SLC22A16 Silent p.T142T 0.48 TCGA-55-A4DF-01 6 11105287 11105287 A G ERVFRD-1 Missense_Mutation p.M86T 0.45 tolerated(0.32) benign(0) TCGA-55-A4DF-01 6 111281623 111281623 G C GTF3C6 Missense_Mutation p.D49H 0.13 deleterious(0) probably_damaging(0.909) TCGA-55-A4DF-01 6 12120884 12120884 C T HIVEP1 Nonsense_Mutation p.Q286* 0.11 TCGA-55-A4DF-01 6 121577382 121577382 C A TBC1D32 Nonsense_Mutation p.E595* 0.35 TCGA-55-A4DF-01 6 121768689 121768689 C T GJA1 Silent p.F232F 0.13 TCGA-55-A4DF-01 6 127796917 127796917 C T SOGA3 Missense_Mutation p.D752N 0.32 deleterious(0) probably_damaging(1) TCGA-55-A4DF-01 6 134491574 134491574 C T SGK1 Splice_Site p.X472_splice 0.15 TCGA-55-A4DF-01 6 145157479 145157479 C T UTRN Silent p.L3289L 0.15 TCGA-55-A4DF-01 6 154743717 154743717 T G CNKSR3 Missense_Mutation p.K290Q 0.57 deleterious(0) probably_damaging(1) TCGA-55-A4DF-01 6 158994512 158994512 C G TMEM181 Silent p.V160V 0.19 TCGA-55-A4DF-01 6 159029729 159029729 C T TMEM181 Silent p.F418F 0.08 TCGA-55-A4DF-01 6 165706716 165706716 T C C6orf118 Intron 0.48 TCGA-55-A4DF-01 6 26020742 26020742 C T HIST1H3A Missense_Mutation p.R9W 0.59 deleterious_low_confidence(0) benign(0.045) TCGA-55-A4DF-01 6 26251947 26251947 G A HIST1H2BH Silent p.Q23Q 0.32 TCGA-55-A4DF-01 6 26426663 26426663 C T BTN2A3P RNA 0.30 TCGA-55-A4DF-01 6 27420617 27420617 G A ZNF184 Nonsense_Mutation p.Q241* 0.52 TCGA-55-A4DF-01 6 27879506 27879506 C G OR2B2 Missense_Mutation p.E198Q 0.43 tolerated(0.15) probably_damaging(0.998) TCGA-55-A4DF-01 6 29910350 29910350 G A HLA-A Missense_Mutation p.R7Q 0.31 tolerated_low_confidence(0.09) probably_damaging(0.992) TCGA-55-A4DF-01 6 30035194 30035194 G A PPP1R11 Missense_Mutation p.E3K 0.22 deleterious(0.01) benign(0.314) TCGA-55-A4DF-01 6 3111152 3111152 C G RIPK1 Missense_Mutation p.F564L 0.17 tolerated(0.68) benign(0) TCGA-55-A4DF-01 6 31500580 31500580 G A DDX39B Silent p.L282L 0.40 TCGA-55-A4DF-01 6 32148055 32148055 C T RNF5 Silent p.L165L 0.10 TCGA-55-A4DF-01 6 33283128 33283128 G C ZBTB22 Missense_Mutation p.F522L 0.07 deleterious(0) probably_damaging(0.999) TCGA-55-A4DF-01 6 33284436 33284436 G C ZBTB22 Silent p.V86V 0.08 TCGA-55-A4DF-01 6 33648329 33648329 C G ITPR3 Intron 0.24 TCGA-55-A4DF-01 6 33995996 33995996 C A GRM4 Missense_Mutation p.V864F 0.40 deleterious(0.01) benign(0.304) TCGA-55-A4DF-01 6 39046938 39046938 G C GLP1R Silent p.L335L 0.28 TCGA-55-A4DF-01 6 39284123 39284123 G A KCNK16 Intron 0.59 TCGA-55-A4DF-01 6 42045335 42045335 G T TAF8 3'UTR 0.33 TCGA-55-A4DF-01 6 43410855 43410855 G T ABCC10 Missense_Mutation p.D792Y 0.23 deleterious(0) probably_damaging(0.935) TCGA-55-A4DF-01 6 43411736 43411736 G A ABCC10 Missense_Mutation p.E828K 0.28 tolerated(0.47) benign(0.002) TCGA-55-A4DF-01 6 43411980 43411980 G T ABCC10 Nonsense_Mutation p.E860* 0.22 TCGA-55-A4DF-01 6 44376295 44376295 G C CDC5L Missense_Mutation p.E340Q 0.14 deleterious(0.03) benign(0.216) TCGA-55-A4DF-01 6 46620271 46620271 G A CYP39A1 Silent p.L17L 0.25 TCGA-55-A4DF-01 6 54792370 54792370 G T FAM83B Missense_Mutation p.G225V 0.12 deleterious(0) probably_damaging(1) TCGA-55-A4DF-01 6 64408111 64408113 AGG TT PHF3 Splice_Site p.X894_splice 0.51 TCGA-55-A4DF-01 6 75857478 75857478 G C COL12A1 Missense_Mutation p.L1444V 0.09 probably_damaging(0.998) TCGA-55-A4DF-01 6 86346742 86346742 T G SYNCRIP Missense_Mutation p.R203S 0.12 deleterious(0) probably_damaging(0.98) TCGA-55-A4DF-01 6 87994526 87994526 G C GJB7 Silent p.V35V 0.15 TCGA-55-A4DF-01 6 93973605 93973605 C - EPHA7 Frame_Shift_Del p.E591Kfs*38 0.23 TCGA-55-A4DF-01 7 100385605 100385605 C G ZAN Missense_Mutation p.I2357M 0.09 unknown(0) TCGA-55-A4DF-01 7 100682607 100682607 G T MUC17 Missense_Mutation p.S2637I 0.54 benign(0.045) TCGA-55-A4DF-01 7 100684576 100684576 G T MUC17 Silent p.V3293V 0.14 TCGA-55-A4DF-01 7 100849607 100849607 C T PLOD3 Silent p.T724T 0.13 TCGA-55-A4DF-01 7 102837679 102837679 C G DPY19L2P2 RNA 0.14 TCGA-55-A4DF-01 7 102939143 102939143 C G PMPCB Silent p.L76L 0.17 TCGA-55-A4DF-01 7 117424499 117424499 G T CTTNBP2 Missense_Mutation p.P693H 0.17 deleterious(0) probably_damaging(0.986) TCGA-55-A4DF-01 7 124386819 124386819 G C GPR37 Missense_Mutation p.S534R 0.39 deleterious(0.04) probably_damaging(0.998) TCGA-55-A4DF-01 7 134618343 134618343 G A CALD1 Missense_Mutation p.E275K 0.11 tolerated_low_confidence(0.06) unknown(0) TCGA-55-A4DF-01 7 140048544 140048544 C G SLC37A3 Missense_Mutation p.L302F 0.09 deleterious(0) probably_damaging(0.998) TCGA-55-A4DF-01 7 140111792 140111792 C T RAB19 Missense_Mutation p.S107F 0.06 deleterious(0) probably_damaging(0.999) TCGA-55-A4DF-01 7 143104708 143104708 T A EPHA1 Missense_Mutation p.D49V 0.17 tolerated(0.11) benign(0.011) TCGA-55-A4DF-01 7 143701913 143701913 T A OR6B1 Missense_Mutation p.F275Y 0.11 deleterious(0) possibly_damaging(0.844) TCGA-55-A4DF-01 7 150715823 150715823 G A ATG9B Silent p.F534F 0.35 TCGA-55-A4DF-01 7 154751611 154751611 C T PAXIP1 Missense_Mutation p.E823K 0.07 deleterious(0) unknown(0) TCGA-55-A4DF-01 7 154755399 154755399 G A PAXIP1 Silent p.V657V 0.12 TCGA-55-A4DF-01 7 157931118 157931118 C A PTPRN2 Nonsense_Mutation p.E334* 0.21 TCGA-55-A4DF-01 7 158448109 158448109 C A NCAPG2 Missense_Mutation p.K809N 0.27 tolerated(0.5) benign(0.01) TCGA-55-A4DF-01 7 21630916 21630916 G T DNAH11 Silent p.L796L 0.14 TCGA-55-A4DF-01 7 23224783 23224783 C A NUPL2 Missense_Mutation p.S72R 0.12 deleterious(0.04) probably_damaging(0.95) TCGA-55-A4DF-01 7 24905054 24905054 G C OSBPL3 Missense_Mutation p.Q194E 0.16 tolerated(1) benign(0.001) TCGA-55-A4DF-01 7 26248098 26248098 G C CBX3 Missense_Mutation p.E85Q 0.09 deleterious(0.04) possibly_damaging(0.629) TCGA-55-A4DF-01 7 27868506 27868506 C G TAX1BP1 3'UTR 0.20 TCGA-55-A4DF-01 7 30118423 30118423 C G PLEKHA8 3'UTR 0.09 TCGA-55-A4DF-01 7 38530661 38530661 G A AMPH Missense_Mutation p.P129S 0.12 deleterious(0) probably_damaging(1) TCGA-55-A4DF-01 7 38725376 38725376 C A FAM183B Missense_Mutation p.G77V 0.16 tolerated(0.18) possibly_damaging(0.852) TCGA-55-A4DF-01 7 43540822 43540822 G A HECW1 Missense_Mutation p.E1178K 0.21 deleterious(0) benign(0.15) TCGA-55-A4DF-01 7 50514718 50514718 C A FIGNL1 Missense_Mutation p.A90S 0.15 deleterious(0.04) benign(0.11) TCGA-55-A4DF-01 7 50514719 50514719 C A FIGNL1 Missense_Mutation p.L89F 0.15 deleterious(0.01) possibly_damaging(0.721) TCGA-55-A4DF-01 7 54614665 54614665 C A VSTM2A Missense_Mutation p.P91Q 0.21 tolerated(0.06) probably_damaging(0.91) TCGA-55-A4DF-01 7 57193792 57193792 G T ZNF479 Silent p.I65I 0.19 TCGA-55-A4DF-01 7 64450874 64450874 G A ZNF117 5'UTR 0.42 TCGA-55-A4DF-01 7 65429344 65429344 G A GUSB Silent p.L585L 0.10 TCGA-55-A4DF-01 7 65441053 65441053 G T GUSB Silent p.L287L 0.06 TCGA-55-A4DF-01 7 65444836 65444836 G A GUSB Silent p.I153I 0.11 TCGA-55-A4DF-01 7 73927248 73927248 G A GTF2IRD1 Missense_Mutation p.R71K 0.08 deleterious(0.04) probably_damaging(0.952) TCGA-55-A4DF-01 7 77551946 77551946 C G PHTF2 Missense_Mutation p.Q290E 0.13 tolerated(0.41) benign(0.038) TCGA-55-A4DF-01 7 81714199 81714199 C T CACNA2D1 Missense_Mutation p.E182K 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-55-A4DF-01 7 82595666 82595666 C T PCLO Silent p.Q1146Q 0.14 TCGA-55-A4DF-01 7 88963769 88963769 C A ZNF804B Missense_Mutation p.D491E 0.23 tolerated(0.38) benign(0) TCGA-55-A4DF-01 7 88963770 88963770 C T ZNF804B Missense_Mutation p.H492Y 0.22 deleterious(0.03) possibly_damaging(0.732) TCGA-55-A4DF-01 7 89856492 89856492 G T STEAP2 Missense_Mutation p.D234Y 0.10 deleterious(0.04) benign(0.119) TCGA-55-A4DF-01 7 89874847 89874847 G A C7orf63 Missense_Mutation p.D37N 0.19 tolerated(0.27) benign(0.001) TCGA-55-A4DF-01 7 89937157 89937157 A G C7orf63 Missense_Mutation p.K847E 0.16 tolerated(1) benign(0.153) TCGA-55-A4DF-01 7 94996709 94996709 T A PON3 Silent p.V153V 0.36 TCGA-55-A4DF-01 7 95668715 95668715 C G DYNC1I1 Silent p.V514V 0.26 TCGA-55-A4DF-01 7 97846806 97846806 C T TECPR1 Missense_Mutation p.D1132N 0.17 deleterious(0.04) possibly_damaging(0.881) TCGA-55-A4DF-01 7 98576474 98576474 G C TRRAP Missense_Mutation p.E2854Q 0.15 probably_damaging(0.93) TCGA-55-A4DF-01 7 99110112 99110112 G C ZKSCAN5 Missense_Mutation p.A151P 0.36 tolerated(0.11) benign(0.05) TCGA-55-A4DF-01 7 99219100 99219100 G T ZSCAN25 Silent p.G164G 0.20 TCGA-55-A4DF-01 7 99247693 99247693 G A CYP3A5 Intron 0.21 TCGA-55-A4DF-01 7 99661578 99661578 C T ZSCAN21 Missense_Mutation p.L254F 0.15 tolerated(0.6) benign(0.01) TCGA-55-A4DF-01 8 101596370 101596370 A G SNX31 Missense_Mutation p.M380T 0.39 tolerated(0.07) benign(0.002) TCGA-55-A4DF-01 8 10466926 10466926 T A RP1L1 Missense_Mutation p.Q1561L 0.26 unknown(0) TCGA-55-A4DF-01 8 107691491 107691491 C T OXR1 Nonsense_Mutation p.Q93* 0.08 TCGA-55-A4DF-01 8 110287697 110287697 C T NUDCD1 Missense_Mutation p.E353K 0.15 tolerated(0.06) benign(0.032) TCGA-55-A4DF-01 8 110334597 110334597 G C NUDCD1 Missense_Mutation p.Q72E 0.20 tolerated(0.85) benign(0.017) TCGA-55-A4DF-01 8 110456949 110456949 T A PKHD1L1 Nonsense_Mutation p.C1617* 0.17 TCGA-55-A4DF-01 8 113241067 113241067 T G CSMD3 Missense_Mutation p.S3628R 0.36 deleterious(0.02) possibly_damaging(0.856) TCGA-55-A4DF-01 8 116631625 116631625 C A TRPS1 Missense_Mutation p.D234Y 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-55-A4DF-01 8 11995754 11995754 C A USP17L2 Missense_Mutation p.M172I 0.23 deleterious(0.01) possibly_damaging(0.714) TCGA-55-A4DF-01 8 124141352 124141352 G A TBC1D31 Missense_Mutation p.E722K 0.15 tolerated(0.05) benign(0.027) TCGA-55-A4DF-01 8 133492609 133492609 G A KCNQ3 Silent p.L57L 0.20 TCGA-55-A4DF-01 8 133945841 133945841 G A TG Missense_Mutation p.V1618M 0.11 tolerated(0.08) benign(0.081) TCGA-55-A4DF-01 8 139895355 139895355 C A COL22A1 Missense_Mutation p.G21W 0.31 probably_damaging(0.965) TCGA-55-A4DF-01 8 143994291 143994291 C A CYP11B2 Missense_Mutation p.V378L 0.20 deleterious(0) possibly_damaging(0.612) TCGA-55-A4DF-01 8 144399933 144399933 G C TOP1MT Silent p.A430A 0.19 TCGA-55-A4DF-01 8 145095660 145095660 G A SPATC1 Missense_Mutation p.A320T 0.12 tolerated(0.45) benign(0.116) TCGA-55-A4DF-01 8 145152018 145152018 G A CYC1 Missense_Mutation p.R285Q 0.39 deleterious(0.01) probably_damaging(1) TCGA-55-A4DF-01 8 145152143 145152143 G C CYC1 Missense_Mutation p.M294I 0.35 tolerated(1) benign(0.004) TCGA-55-A4DF-01 8 145153865 145153865 G A SHARPIN Silent p.I360I 0.27 TCGA-55-A4DF-01 8 145154200 145154200 G A SHARPIN Missense_Mutation p.S301L 0.34 deleterious(0.01) possibly_damaging(0.662) TCGA-55-A4DF-01 8 145154326 145154326 G A SHARPIN Missense_Mutation p.S259L 0.35 tolerated(0.82) probably_damaging(0.962) TCGA-55-A4DF-01 8 17132389 17132389 A T VPS37A Silent p.T188T 0.44 TCGA-55-A4DF-01 8 17406291 17406291 G A SLC7A2 Missense_Mutation p.G253R 0.11 deleterious(0) probably_damaging(0.97) TCGA-55-A4DF-01 8 17406315 17406315 A G SLC7A2 Missense_Mutation p.S261G 0.40 tolerated(0.09) benign(0.019) TCGA-55-A4DF-01 8 23299183 23299183 T G ENTPD4 Missense_Mutation p.I261L 0.12 tolerated(1) benign(0.004) TCGA-55-A4DF-01 8 27657091 27657091 G C ESCO2 Missense_Mutation p.E511Q 0.05 tolerated(0.52) benign(0.001) TCGA-55-A4DF-01 8 36768500 36768500 C A KCNU1 Missense_Mutation p.S795Y 0.21 deleterious(0.01) possibly_damaging(0.59) TCGA-55-A4DF-01 8 38111151 38111151 C G DDHD2 Missense_Mutation p.Q657E 0.28 deleterious(0.02) benign(0.217) TCGA-55-A4DF-01 8 48777256 48777256 C A PRKDC Missense_Mutation p.R1810L 0.14 benign(0.002) TCGA-55-A4DF-01 8 56436125 56436125 T A XKR4 Missense_Mutation p.I431N 0.20 deleterious(0) probably_damaging(0.996) TCGA-55-A4DF-01 8 57905952 57905952 C T IMPAD1 Missense_Mutation p.E65K 0.41 tolerated(0.17) possibly_damaging(0.623) TCGA-55-A4DF-01 8 61137142 61137142 C A CA8 Silent p.G193G 0.10 TCGA-55-A4DF-01 8 61137143 61137143 C A CA8 Missense_Mutation p.G193V 0.10 deleterious(0.02) probably_damaging(0.99) TCGA-55-A4DF-01 8 61765695 61765695 A T CHD7 Silent p.A2137A 0.23 TCGA-55-A4DF-01 8 67357583 67357583 G C ADHFE1 Missense_Mutation p.D162H 0.14 deleterious(0) possibly_damaging(0.864) TCGA-55-A4DF-01 8 69033262 69033262 G C PREX2 Missense_Mutation p.Q1234H 0.21 tolerated(0.17) benign(0.003) TCGA-55-A4DF-01 8 69445429 69445429 G A C8orf34 Intron 0.39 TCGA-55-A4DF-01 8 70476180 70476180 T G SULF1 5'UTR 0.15 TCGA-55-A4DF-01 8 71036164 71036164 C A NCOA2 Silent p.V1416V 0.10 TCGA-55-A4DF-01 8 99168522 99168522 G C POP1 Missense_Mutation p.E768Q 0.18 tolerated(0.19) benign(0.011) TCGA-55-A4DF-01 9 100412842 100412842 C T NCBP1 Missense_Mutation p.H319Y 0.17 tolerated(0.58) possibly_damaging(0.515) TCGA-55-A4DF-01 9 104125299 104125299 T A BAAT Splice_Site p.X224_splice 0.18 TCGA-55-A4DF-01 9 107576396 107576396 G A ABCA1 Intron 0.29 TCGA-55-A4DF-01 9 113208295 113208295 C G SVEP1 Missense_Mutation p.D1429H 0.28 possibly_damaging(0.863) TCGA-55-A4DF-01 9 124534889 124534889 G T DAB2IP Silent p.L666L 0.20 TCGA-55-A4DF-01 9 125273131 125273131 C A OR1J2 Silent p.L17L 0.17 TCGA-55-A4DF-01 9 130438200 130438200 C T STXBP1 Missense_Mutation p.L410F 0.19 deleterious(0) probably_damaging(0.999) TCGA-55-A4DF-01 9 130476516 130476516 C A PTRH1 Nonsense_Mutation p.E170* 0.24 TCGA-55-A4DF-01 9 131019213 131019213 C G GOLGA2 3'UTR 0.50 TCGA-55-A4DF-01 9 131036192 131036192 C G GOLGA2 Missense_Mutation p.K48N 0.21 deleterious(0.01) possibly_damaging(0.802) TCGA-55-A4DF-01 9 135555142 135555142 C G GTF3C4 Silent p.L712L 0.14 TCGA-55-A4DF-01 9 135564397 135564397 G C GTF3C4 3'UTR 0.12 TCGA-55-A4DF-01 9 139379065 139379065 G C C9orf163 Silent p.G55G 0.50 TCGA-55-A4DF-01 9 139399874 139399874 G A NOTCH1 Nonsense_Mutation p.Q1492* 0.10 TCGA-55-A4DF-01 9 140128935 140128935 C T SLC34A3 Silent p.F387F 0.55 TCGA-55-A4DF-01 9 140674100 140674100 C T EHMT1 Missense_Mutation p.R736C 0.24 deleterious(0.02) probably_damaging(0.997) TCGA-55-A4DF-01 9 15225920 15225920 G A TTC39B Silent p.V122V 0.09 TCGA-55-A4DF-01 9 16727921 16727921 C T BNC2 Silent p.L68L 0.66 TCGA-55-A4DF-01 9 27062668 27062668 G C IFT74 Silent p.V579V 0.79 TCGA-55-A4DF-01 9 32632175 32632175 G A TAF1L Nonsense_Mutation p.Q1135* 0.47 TCGA-55-A4DF-01 9 34385780 34385780 C G C9orf24 Splice_Site p.X46_splice 0.07 TCGA-55-A4DF-01 9 35376139 35376139 G A UNC13B Missense_Mutation p.E495K 0.08 deleterious(0) probably_damaging(0.999) TCGA-55-A4DF-01 9 35737843 35737843 C T GBA2 Missense_Mutation p.G803R 0.10 deleterious(0) probably_damaging(1) TCGA-55-A4DF-01 9 35738377 35738377 C T GBA2 Intron 0.11 TCGA-55-A4DF-01 9 6015494 6015494 C G RANBP6 Missense_Mutation p.E38D 0.11 deleterious(0.01) possibly_damaging(0.792) TCGA-55-A4DF-01 9 72071311 72071311 T C APBA1 Missense_Mutation p.Y547C 0.43 deleterious(0) probably_damaging(0.983) TCGA-55-A4DF-01 9 79461455 79461455 C T PRUNE2 Missense_Mutation p.E162K 0.43 deleterious(0.01) possibly_damaging(0.536) TCGA-55-A4DF-01 9 79996944 79996944 G A VPS13A Missense_Mutation p.E3044K 0.41 deleterious(0) benign(0.048) TCGA-55-A4DF-01 9 89560861 89560861 C G GAS1 Silent p.A278A 0.56 TCGA-55-A4DF-01 9 90387898 90387898 C T CTSL3P RNA 0.07 TCGA-55-A4DF-01 9 91083442 91083442 G C SPIN1 Missense_Mutation p.E171Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-55-A4DF-01 9 95646194 95646194 C G RP11-526D8.7 Intron 0.56 TCGA-55-A4DF-01 9 95947796 95947796 C G WNK2 Silent p.L195L 0.12 TCGA-55-A4DF-01 X 100617624 100617624 C G BTK Missense_Mutation p.D149H 0.16 deleterious(0.01) probably_damaging(0.994) TCGA-55-A4DF-01 X 10165983 10165983 C G CLCN4 Missense_Mutation p.A146G 0.40 tolerated(0.22) benign(0.009) TCGA-55-A4DF-01 X 104992970 104992970 G C IL1RAPL2 Missense_Mutation p.E356Q 0.34 tolerated(0.05) probably_damaging(0.979) TCGA-55-A4DF-01 X 105970443 105970443 G C RNF128 Silent p.T100T 0.22 TCGA-55-A4DF-01 X 111874685 111874685 G A LHFPL1 Missense_Mutation p.S209F 0.26 deleterious_low_confidence(0) benign(0.446) TCGA-55-A4DF-01 X 117676951 117676951 G A DOCK11 Silent p.K94K 0.20 TCGA-55-A4DF-01 X 119249824 119249824 G T RHOXF1 5'UTR 0.50 TCGA-55-A4DF-01 X 128975979 128975979 C A ZDHHC9 5'UTR 0.58 TCGA-55-A4DF-01 X 132795805 132795805 C G GPC3 Missense_Mutation p.E479Q 0.22 deleterious(0.04) benign(0.088) TCGA-55-A4DF-01 X 134156353 134156353 T G FAM127C Missense_Mutation p.Q46P 0.33 deleterious(0) probably_damaging(0.998) TCGA-55-A4DF-01 X 13785402 13785402 G T OFD1 Missense_Mutation p.R919M 0.51 tolerated(0.16) possibly_damaging(0.702) TCGA-55-A4DF-01 X 1407434 1407434 G C CSF2RA Missense_Mutation p.C81S 0.26 deleterious(0) probably_damaging(0.964) TCGA-55-A4DF-01 X 140995480 140995480 C A MAGEC1 Missense_Mutation p.Q764K 0.26 deleterious_low_confidence(0) benign(0.042) TCGA-55-A4DF-01 X 148564249 148564249 C T IDS 3'UTR 0.29 TCGA-55-A4DF-01 X 148798190 148798190 G T MAGEA11 Missense_Mutation p.E348D 0.12 tolerated(0.06) benign(0.012) TCGA-55-A4DF-01 X 149924337 149924337 G C MTMR1 Missense_Mutation p.Q611H 0.16 deleterious(0) probably_damaging(0.947) TCGA-55-A4DF-01 X 153297809 153297809 C T MECP2 Missense_Mutation p.E88K 0.20 tolerated(0.07) benign(0.283) TCGA-55-A4DF-01 X 153490565 153490565 G C OPN1MW2 Missense_Mutation p.A101P 0.37 tolerated(0.1) benign(0.044) TCGA-55-A4DF-01 X 153667448 153667448 A C GDI1 Missense_Mutation p.Y117S 0.49 tolerated(0.36) benign(0.078) TCGA-55-A4DF-01 X 154156964 154156964 C T F8 Missense_Mutation p.E1701K 0.18 deleterious(0) possibly_damaging(0.766) TCGA-55-A4DF-01 X 17744529 17744529 C G NHS Nonsense_Mutation p.S747* 0.53 TCGA-55-A4DF-01 X 23412340 23412340 C G PTCHD1 3'UTR 0.21 TCGA-55-A4DF-01 X 2873565 2873565 C T ARSE Missense_Mutation p.D67N 0.53 deleterious(0.01) benign(0.443) TCGA-55-A4DF-01 X 29301256 29301256 G C IL1RAPL1 Missense_Mutation p.R95T 0.30 deleterious(0) probably_damaging(0.977) TCGA-55-A4DF-01 X 32662316 32662316 C T DMD Missense_Mutation p.E422K 0.28 benign(0.281) TCGA-55-A4DF-01 X 37028346 37028346 G T FAM47C Missense_Mutation p.E621D 0.52 deleterious(0.04) possibly_damaging(0.627) TCGA-55-A4DF-01 X 50213476 50213476 C G DGKK RNA 0.28 TCGA-55-A4DF-01 X 69261763 69261763 G T AWAT2 Silent p.I299I 0.54 TCGA-55-A4DF-01 X 70776805 70776805 C T OGT Silent p.I390I 0.30 TCGA-55-A4DF-01 X 83359665 83359665 C G RPS6KA6 Missense_Mutation p.V486L 0.21 deleterious(0.01) possibly_damaging(0.54) TCGA-55-A4DF-01 X 83724132 83724132 G C HDX Missense_Mutation p.S200C 0.16 deleterious(0.02) possibly_damaging(0.681) TCGA-55-A4DG-01 10 101982729 101982729 T C CHUK Missense_Mutation p.H70R 0.36 deleterious(0) possibly_damaging(0.784) TCGA-55-A4DG-01 10 106602618 106602618 G A SORCS3 Splice_Site p.X232_splice 0.28 TCGA-55-A4DG-01 10 108447982 108447982 C A SORCS1 Missense_Mutation p.D510Y 0.13 deleterious(0.05) probably_damaging(0.994) TCGA-55-A4DG-01 10 118220584 118220584 C A PNLIPRP3 Silent p.I224I 0.13 TCGA-55-A4DG-01 10 121674283 121674283 G T SEC23IP Missense_Mutation p.G452C 0.15 deleterious(0) probably_damaging(0.997) TCGA-55-A4DG-01 10 131760458 131760458 G T EBF3 Missense_Mutation p.L130I 0.10 deleterious(0) probably_damaging(0.996) TCGA-55-A4DG-01 10 14870258 14870258 G C CDNF Missense_Mutation p.F43L 0.07 deleterious(0.02) possibly_damaging(0.779) TCGA-55-A4DG-01 10 15726083 15726083 G T ITGA8 Missense_Mutation p.P163Q 0.07 tolerated(0.41) benign(0.14) TCGA-55-A4DG-01 10 17199674 17199674 C A TRDMT1 Missense_Mutation p.G218V 0.31 tolerated(0.3) benign(0.143) TCGA-55-A4DG-01 10 17702528 17702528 G T STAM Missense_Mutation p.V36F 0.45 deleterious(0) probably_damaging(0.984) TCGA-55-A4DG-01 10 23244735 23244735 G T ARMC3 Splice_Site p.X56_splice 0.77 TCGA-55-A4DG-01 10 27702722 27702722 C G PTCHD3 Missense_Mutation p.G153A 0.13 deleterious(0.04) possibly_damaging(0.872) TCGA-55-A4DG-01 10 31809650 31809650 C A ZEB1 Missense_Mutation p.P464T 0.58 deleterious(0) probably_damaging(0.999) TCGA-55-A4DG-01 10 35928725 35928725 C A FZD8 Missense_Mutation p.A545S 0.31 tolerated(0.15) benign(0.262) TCGA-55-A4DG-01 10 44053539 44053539 C G ZNF239 5'UTR 0.20 TCGA-55-A4DG-01 10 48428975 48428975 G C GDF10 Missense_Mutation p.P304R 0.27 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 10 50531252 50531252 C A C10orf71 Missense_Mutation p.S221Y 0.29 deleterious(0.01) probably_damaging(0.957) TCGA-55-A4DG-01 10 50873084 50873084 C A CHAT Missense_Mutation p.Q747K 0.13 tolerated_low_confidence(0.37) benign(0.002) TCGA-55-A4DG-01 10 55583042 55583042 C T PCDH15 Missense_Mutation p.V1484M 0.16 tolerated_low_confidence(0.16) benign(0.007) TCGA-55-A4DG-01 10 62038859 62038859 C A ANK3 Missense_Mutation p.E88D 0.16 benign(0.042) TCGA-55-A4DG-01 10 71174743 71174743 A G TACR2 Missense_Mutation p.V182A 0.20 tolerated(0.12) benign(0.008) TCGA-55-A4DG-01 10 71868845 71868845 C T H2AFY2 Missense_Mutation p.P279S 0.17 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 10 72025849 72025849 C A NPFFR1 Silent p.V102V 0.09 TCGA-55-A4DG-01 10 72326463 72326463 C G PALD1 Missense_Mutation p.P849A 0.25 deleterious_low_confidence(0.01) benign(0.069) TCGA-55-A4DG-01 10 7608354 7608354 T C ITIH5 Silent p.G722G 0.38 TCGA-55-A4DG-01 10 82040001 82040001 C A MAT1A Missense_Mutation p.K159N 0.31 deleterious(0.04) benign(0.014) TCGA-55-A4DG-01 10 87482767 87482767 G A GRID1 Missense_Mutation p.P664S 0.17 tolerated(0.6) benign(0.257) TCGA-55-A4DG-01 10 875465 875465 C A LARP4B Missense_Mutation p.V329L 0.07 tolerated(0.34) benign(0.015) TCGA-55-A4DG-01 10 96708978 96708978 A T CYP2C9 Missense_Mutation p.Q252H 0.25 deleterious(0.03) benign(0.264) TCGA-55-A4DG-01 10 98369518 98369518 C G PIK3AP1 Silent p.T707T 0.15 TCGA-55-A4DG-01 10 98405368 98405368 C A PIK3AP1 Nonsense_Mutation p.E413* 0.18 TCGA-55-A4DG-01 11 101762127 101762127 A G ANGPTL5 Silent p.S350S 0.29 TCGA-55-A4DG-01 11 104868130 104868130 G A CASP5 Silent p.L409L 0.33 TCGA-55-A4DG-01 11 105925069 105925069 T A KBTBD3 Missense_Mutation p.K116I 0.27 tolerated(0.11) benign(0.043) TCGA-55-A4DG-01 11 106558357 106558357 G T GUCY1A2 Missense_Mutation p.P737Q 0.38 deleterious(0) possibly_damaging(0.48) TCGA-55-A4DG-01 11 113780035 113780035 C T HTR3B Missense_Mutation p.T24I 0.31 tolerated(0.09) benign(0.004) TCGA-55-A4DG-01 11 119059376 119059376 G T PDZD3 Nonsense_Mutation p.E363* 0.35 TCGA-55-A4DG-01 11 122756717 122756717 A T C11orf63 Missense_Mutation p.I54F 0.42 tolerated(0.63) benign(0.005) TCGA-55-A4DG-01 11 123065729 123065729 G T CLMP 5'UTR 0.43 TCGA-55-A4DG-01 11 123813821 123813821 G T OR6T1 Missense_Mutation p.A242D 0.35 deleterious(0) probably_damaging(0.949) TCGA-55-A4DG-01 11 123900922 123900922 T - OR10G8 Frame_Shift_Del p.F199Lfs*2 0.17 TCGA-55-A4DG-01 11 130064047 130064047 G T ST14 Missense_Mutation p.L293F 0.15 tolerated(0.06) probably_damaging(0.936) TCGA-55-A4DG-01 11 15212252 15212252 G T INSC Silent p.L242L 0.15 TCGA-55-A4DG-01 11 17418584 17418584 A G ABCC8 Missense_Mutation p.L1333P 0.15 tolerated_low_confidence(0.09) benign(0.203) TCGA-55-A4DG-01 11 17452345 17452345 C T ABCC8 Intron 0.13 TCGA-55-A4DG-01 11 18028240 18028240 C G SERGEF Missense_Mutation p.G84R 0.32 deleterious(0) probably_damaging(0.957) TCGA-55-A4DG-01 11 20177869 20177869 G A DBX1 Missense_Mutation p.P347L 0.20 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-55-A4DG-01 11 21596620 21596620 G T NELL1 3'UTR 0.33 TCGA-55-A4DG-01 11 26586887 26586887 T G MUC15 Silent p.S200S 0.25 TCGA-55-A4DG-01 11 30435838 30435838 G T MPPED2 Missense_Mutation p.L235M 0.13 deleterious(0) probably_damaging(0.996) TCGA-55-A4DG-01 11 30915912 30915912 A G DCDC1 Silent p.C1592C 0.10 TCGA-55-A4DG-01 11 36296060 36296060 C A COMMD9 3'UTR 0.20 TCGA-55-A4DG-01 11 43511892 43511892 C T TTC17 Missense_Mutation p.A1045V 0.11 tolerated(0.21) possibly_damaging(0.572) TCGA-55-A4DG-01 11 4471020 4471020 G C OR52K2 Missense_Mutation p.V151L 0.09 tolerated(0.42) benign(0.019) TCGA-55-A4DG-01 11 45671455 45671455 G T CHST1 Missense_Mutation p.P340H 0.19 tolerated(0.13) possibly_damaging(0.549) TCGA-55-A4DG-01 11 46748302 46748302 G T F2 Missense_Mutation p.D349Y 0.41 deleterious(0) probably_damaging(0.979) TCGA-55-A4DG-01 11 4928672 4928672 A G OR51A7 Missense_Mutation p.I25V 0.21 tolerated(0.32) benign(0.003) TCGA-55-A4DG-01 11 5363988 5363988 A C OR51B5 Missense_Mutation p.L256W 0.41 deleterious(0) probably_damaging(0.998) TCGA-55-A4DG-01 11 5565860 5565860 C A OR52H1 Missense_Mutation p.M298I 0.30 tolerated(1) benign(0) TCGA-55-A4DG-01 11 55658737 55658737 G T TRIM51 Missense_Mutation p.V330L 0.29 tolerated(0.05) benign(0.015) TCGA-55-A4DG-01 11 55798203 55798204 CT A OR5AS1 Frame_Shift_Del p.F103Lfs*33 0.10 TCGA-55-A4DG-01 11 56185463 56185463 C T OR5R1 Missense_Mutation p.M82I 0.14 deleterious(0.02) benign(0.02) TCGA-55-A4DG-01 11 56380696 56380696 C G OR5M1 Missense_Mutation p.A95P 0.32 tolerated(0.32) benign(0.06) TCGA-55-A4DG-01 11 56431865 56431865 T C OR5AR1 Missense_Mutation p.L235P 0.09 tolerated(0.2) possibly_damaging(0.65) TCGA-55-A4DG-01 11 57971422 57971422 A T OR1S2 Missense_Mutation p.Y78N 0.19 tolerated(1) benign(0) TCGA-55-A4DG-01 11 59211378 59211378 C A OR5A1 Nonsense_Mutation p.S246* 0.30 TCGA-55-A4DG-01 11 59481116 59481116 A T OR10V1 Missense_Mutation p.V68D 0.11 tolerated(0.13) benign(0.258) TCGA-55-A4DG-01 11 61133546 61133546 T G TMEM138 Missense_Mutation p.I53S 0.11 deleterious(0.01) benign(0.096) TCGA-55-A4DG-01 11 62559845 62559845 C A NXF1 3'UTR 0.36 TCGA-55-A4DG-01 11 62744699 62744699 G T SLC22A6 Missense_Mutation p.L508M 0.31 tolerated(0.09) possibly_damaging(0.517) TCGA-55-A4DG-01 11 63312207 63312207 A G RARRES3 Missense_Mutation p.N78S 0.18 deleterious(0) possibly_damaging(0.655) TCGA-55-A4DG-01 11 64358936 64358936 C A SLC22A12 5'UTR 0.41 TCGA-55-A4DG-01 11 64358937 64358937 C A SLC22A12 5'UTR 0.43 TCGA-55-A4DG-01 11 64853941 64853941 C T ZFPL1 Missense_Mutation p.T90M 0.11 deleterious(0) probably_damaging(0.948) TCGA-55-A4DG-01 11 66328219 66328219 G A CTSF 3'Flank 0.23 TCGA-55-A4DG-01 11 67075183 67075183 C T SSH3 Missense_Mutation p.R256W 0.10 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 11 67401770 67401770 G A TBX10 Missense_Mutation p.R147C 0.24 deleterious(0) probably_damaging(0.98) TCGA-55-A4DG-01 11 6942351 6942351 A T OR2D3 Missense_Mutation p.Q40L 0.22 deleterious(0.01) possibly_damaging(0.548) TCGA-55-A4DG-01 11 6942352 6942352 G T OR2D3 Missense_Mutation p.Q40H 0.22 deleterious(0) benign(0.106) TCGA-55-A4DG-01 11 71820894 71820894 G A ANAPC15 3'UTR 0.24 TCGA-55-A4DG-01 11 76371443 76371443 C G LRRC32 Silent p.L398L 0.22 TCGA-55-A4DG-01 11 76751274 76751274 G T B3GNT6 Missense_Mutation p.V227L 0.35 deleterious(0.03) probably_damaging(0.998) TCGA-55-A4DG-01 11 7847235 7847235 A G OR5P3 Silent p.A95A 0.12 TCGA-55-A4DG-01 11 89106598 89106598 A T NOX4 Splice_Site p.X379_splice 0.14 TCGA-55-A4DG-01 11 8959677 8959677 G - ASCL3 Frame_Shift_Del p.P11Lfs*15 0.26 TCGA-55-A4DG-01 11 92086880 92086880 G A FAT3 Silent p.L534L 0.36 TCGA-55-A4DG-01 11 92086881 92086881 G C FAT3 Missense_Mutation p.D535H 0.36 probably_damaging(1) TCGA-55-A4DG-01 11 92715335 92715335 C A MTNR1B Missense_Mutation p.R316S 0.15 deleterious(0.01) benign(0.401) TCGA-55-A4DG-01 12 100797858 100797858 G A SLC17A8 Missense_Mutation p.V366I 0.13 tolerated(1) benign(0.011) TCGA-55-A4DG-01 12 102010991 102010991 G C MYBPC1 Missense_Mutation p.E25Q 0.36 tolerated(0.47) benign(0.047) TCGA-55-A4DG-01 12 102590279 102590279 A T PARPBP 3'UTR 0.58 TCGA-55-A4DG-01 12 110819591 110819591 T C ANAPC7 Missense_Mutation p.I400M 0.19 tolerated(0.29) benign(0.055) TCGA-55-A4DG-01 12 111758261 111758261 T C CUX2 Silent p.S816S 0.41 TCGA-55-A4DG-01 12 111758262 111758262 G T CUX2 Missense_Mutation p.G817C 0.41 deleterious(0.01) possibly_damaging(0.469) TCGA-55-A4DG-01 12 113334682 113334682 C A RPH3A 3'UTR 0.27 TCGA-55-A4DG-01 12 113348990 113348990 C T OAS1 Missense_Mutation p.P202S 0.19 deleterious(0) probably_damaging(0.965) TCGA-55-A4DG-01 12 114803928 114803928 G T TBX5 Intron 0.29 TCGA-55-A4DG-01 12 114803929 114803929 G T TBX5 Intron 0.29 TCGA-55-A4DG-01 12 120502619 120502619 C T CCDC64 Missense_Mutation p.T282I 0.15 tolerated(0.06) possibly_damaging(0.876) TCGA-55-A4DG-01 12 21636328 21636328 C A RECQL Nonsense_Mutation p.G228* 0.18 TCGA-55-A4DG-01 12 21918784 21918784 C T KCNJ8 Missense_Mutation p.R383H 0.22 deleterious(0.04) probably_damaging(0.98) TCGA-55-A4DG-01 12 21919014 21919014 G C KCNJ8 Silent p.T306T 0.20 TCGA-55-A4DG-01 12 22778506 22778506 G T ETNK1 Nonsense_Mutation p.E137* 0.62 TCGA-55-A4DG-01 12 25302609 25302609 C A CASC1 Nonsense_Mutation p.E180* 0.36 TCGA-55-A4DG-01 12 2721102 2721102 A G CACNA1C Missense_Mutation p.M1271V 0.11 deleterious(0.05) benign(0.219) TCGA-55-A4DG-01 12 27571020 27571020 G T ARNTL2 Splice_Site p.X556_splice 0.18 TCGA-55-A4DG-01 12 29904601 29904601 C T TMTC1 Missense_Mutation p.M312I 0.20 deleterious(0.03) benign(0.065) TCGA-55-A4DG-01 12 33031066 33031066 G C PKP2 Missense_Mutation p.R250G 0.29 deleterious(0.03) benign(0.375) TCGA-55-A4DG-01 12 39079398 39079399 - C CPNE8 Frame_Shift_Ins p.Y389Vfs*3 0.22 TCGA-55-A4DG-01 12 40076718 40076718 G T C12orf40 Missense_Mutation p.C331F 0.17 tolerated(0.43) possibly_damaging(0.613) TCGA-55-A4DG-01 12 4920654 4920654 G T KCNA6 Missense_Mutation p.G483W 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.816) TCGA-55-A4DG-01 12 49391073 49391073 C G DDN Missense_Mutation p.G529A 0.32 tolerated_low_confidence(0.51) benign(0.04) TCGA-55-A4DG-01 12 50037765 50037765 G A PRPF40B Missense_Mutation p.G855D 0.22 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-55-A4DG-01 12 52797534 52797534 C A KRT82 Nonsense_Mutation p.E191* 0.24 TCGA-55-A4DG-01 12 57850734 57850734 C T INHBE 3'UTR 0.39 TCGA-55-A4DG-01 12 57944013 57944013 C A KIF5A 5'UTR 0.27 TCGA-55-A4DG-01 12 58020606 58020606 C G B4GALNT1 Missense_Mutation p.G508A 0.29 tolerated(0.61) benign(0.066) TCGA-55-A4DG-01 12 69103080 69103080 A T NUP107 Silent p.R264R 0.52 TCGA-55-A4DG-01 12 72058225 72058225 G C THAP2 5'UTR 0.22 TCGA-55-A4DG-01 12 7640163 7640163 T A CD163 Silent p.I614I 0.31 TCGA-55-A4DG-01 12 78511876 78511876 C A NAV3 Missense_Mutation p.P947T 0.27 tolerated(0.55) benign(0) TCGA-55-A4DG-01 12 80729848 80729848 C A OTOGL Missense_Mutation p.P1501T 0.33 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 12 89995157 89995157 T C ATP2B1 Missense_Mutation p.I1038M 0.40 tolerated(0.09) benign(0.203) TCGA-55-A4DG-01 13 100617661 100617661 C - ZIC5 Frame_Shift_Del p.N655Tfs*14 0.29 TCGA-55-A4DG-01 13 101720352 101720352 G T NALCN Missense_Mutation p.S1455Y 0.32 deleterious(0) probably_damaging(0.996) TCGA-55-A4DG-01 13 113965058 113965058 G T LAMP1 Missense_Mutation p.R146S 0.39 tolerated(0.57) benign(0.02) TCGA-55-A4DG-01 13 114287513 114287513 G C TFDP1 Missense_Mutation p.R129S 0.19 deleterious(0.02) benign(0.1) TCGA-55-A4DG-01 13 20659979 20659979 A T ZMYM2 Missense_Mutation p.Q1320L 0.17 deleterious(0.01) probably_damaging(0.985) TCGA-55-A4DG-01 13 26138170 26138170 G T ATP8A2 Splice_Site p.X491_splice 0.16 TCGA-55-A4DG-01 13 27333299 27333299 C G GPR12 Missense_Mutation p.K222N 0.20 deleterious(0.01) possibly_damaging(0.777) TCGA-55-A4DG-01 13 28959060 28959060 G T FLT1 Missense_Mutation p.T693N 0.15 deleterious(0.05) possibly_damaging(0.828) TCGA-55-A4DG-01 13 32841351 32841351 T C FRY Missense_Mutation p.F2664S 0.16 tolerated(0.16) possibly_damaging(0.562) TCGA-55-A4DG-01 13 36049326 36049326 G C MAB21L1 Missense_Mutation p.P317R 0.11 deleterious(0) probably_damaging(0.983) TCGA-55-A4DG-01 13 38145519 38145519 T A POSTN Missense_Mutation p.E722D 0.26 deleterious_low_confidence(0) benign(0.066) TCGA-55-A4DG-01 13 39596463 39596463 C A PROSER1 Nonsense_Mutation p.E244* 0.12 TCGA-55-A4DG-01 13 49089463 49089463 C A RCBTB2 Missense_Mutation p.G76V 0.12 deleterious(0) probably_damaging(0.986) TCGA-55-A4DG-01 13 49089464 49089464 C A RCBTB2 Missense_Mutation p.G76C 0.13 deleterious(0) probably_damaging(0.998) TCGA-55-A4DG-01 13 52513329 52513329 C A ATP7B Missense_Mutation p.G1186V 0.18 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 13 53420802 53420802 G T PCDH8 Silent p.S590S 0.38 TCGA-55-A4DG-01 13 53602980 53602980 C A OLFM4 Silent p.P3P 0.34 TCGA-55-A4DG-01 13 58299346 58299346 T A PCDH17 Missense_Mutation p.V1133E 0.13 deleterious_low_confidence(0.01) benign(0.255) TCGA-55-A4DG-01 13 72440371 72440371 G T DACH1 Silent p.S179S 0.19 TCGA-55-A4DG-01 13 84454588 84454588 C T SLITRK1 Missense_Mutation p.G352E 0.20 tolerated(0.16) benign(0) TCGA-55-A4DG-01 13 86368286 86368286 C A SLITRK6 Missense_Mutation p.M786I 0.13 tolerated(0.41) benign(0) TCGA-55-A4DG-01 13 95818411 95818411 C A ABCC4 Splice_Site p.X678_splice 0.42 TCGA-55-A4DG-01 13 99337071 99337071 G T SLC15A1 Silent p.I678I 0.20 TCGA-55-A4DG-01 13 99549853 99549853 T - DOCK9 Frame_Shift_Del p.K533Rfs*47 0.16 TCGA-55-A4DG-01 14 101200779 101200779 G A DLK1 Missense_Mutation p.C233Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-55-A4DG-01 14 105407964 105407964 C A AHNAK2 Silent p.A4608A 0.21 TCGA-55-A4DG-01 14 105416925 105416925 C G AHNAK2 Silent p.L1621L 0.12 TCGA-55-A4DG-01 14 105945826 105945826 C A CRIP2 Silent p.P259P 0.22 TCGA-55-A4DG-01 14 107179100 107179100 G T IGHV2-70 Missense_Mutation p.S26Y 0.15 deleterious(0) probably_damaging(0.981) TCGA-55-A4DG-01 14 107199117 107199117 G A IGHV3-72 Nonsense_Mutation p.Q58* 0.11 TCGA-55-A4DG-01 14 20216474 20216474 G C OR4Q3 Missense_Mutation p.K296N 0.11 deleterious(0) possibly_damaging(0.677) TCGA-55-A4DG-01 14 20249289 20249289 G C OR4M1 Missense_Mutation p.D270H 0.06 deleterious(0) probably_damaging(0.998) TCGA-55-A4DG-01 14 20502491 20502491 C G OR4K13 Missense_Mutation p.G143R 0.17 tolerated(0.26) benign(0.012) TCGA-55-A4DG-01 14 20612329 20612329 G C OR4N5 Silent p.S145S 0.17 TCGA-55-A4DG-01 14 20876539 20876539 C A TEP1 Silent p.R20R 0.25 TCGA-55-A4DG-01 14 21526351 21526351 C T RNASE8 Silent p.H100H 0.28 TCGA-55-A4DG-01 14 22090029 22090029 G T TRAV1-1 5'UTR 0.15 TCGA-55-A4DG-01 14 22471659 22471659 G T TRAV18 Missense_Mutation p.G28C 0.14 deleterious(0) probably_damaging(0.978) TCGA-55-A4DG-01 14 22509254 22509254 C A TRAV20 Silent p.G64G 0.25 TCGA-55-A4DG-01 14 22521026 22521026 G T TRAV21 Missense_Mutation p.W16L 0.15 tolerated(0.15) unknown(0) TCGA-55-A4DG-01 14 23512119 23512119 C A PSMB11 Silent p.R229R 0.27 TCGA-55-A4DG-01 14 23745935 23745935 C A HOMEZ Missense_Mutation p.G168C 0.24 tolerated(0.2) benign(0.007) TCGA-55-A4DG-01 14 23901022 23901022 G T MYH7 Missense_Mutation p.A196D 0.29 deleterious(0) probably_damaging(0.984) TCGA-55-A4DG-01 14 24974787 24974787 G C CMA1 Missense_Mutation p.P227A 0.40 deleterious(0.01) probably_damaging(0.986) TCGA-55-A4DG-01 14 24974788 24974788 G T CMA1 Silent p.P226P 0.38 TCGA-55-A4DG-01 14 29237306 29237306 G A FOXG1 Missense_Mutation p.R274Q 0.14 deleterious(0) probably_damaging(0.998) TCGA-55-A4DG-01 14 31795411 31795411 G A HEATR5A Silent p.L1169L 0.33 TCGA-55-A4DG-01 14 38678882 38678882 C A SSTR1 Nonsense_Mutation p.Y96* 0.32 TCGA-55-A4DG-01 14 39709792 39709792 A T MIA2 Nonsense_Mutation p.R93* 0.18 TCGA-55-A4DG-01 14 45513877 45513877 G C FAM179B Missense_Mutation p.V1320L 0.17 tolerated(0.14) benign(0.005) TCGA-55-A4DG-01 14 52906069 52906069 C G TXNDC16 Missense_Mutation p.D683H 0.35 deleterious(0.01) benign(0.102) TCGA-55-A4DG-01 14 53194258 53194258 G T PSMC6 Nonsense_Mutation p.E379* 0.29 TCGA-55-A4DG-01 14 57863469 57863469 G T NAA30 Splice_Site p.X258_splice 0.08 TCGA-55-A4DG-01 14 61923939 61923939 A T PRKCH Missense_Mutation p.S336C 0.31 tolerated(0.05) benign(0.312) TCGA-55-A4DG-01 14 63174904 63174904 C A KCNH5 Silent p.T763T 0.30 TCGA-55-A4DG-01 14 63447706 63447706 C A KCNH5 Nonsense_Mutation p.E276* 0.34 TCGA-55-A4DG-01 14 64954061 64954061 C A ZBTB25 Missense_Mutation p.R296S 0.12 deleterious(0.01) benign(0.05) TCGA-55-A4DG-01 14 68257301 68257301 C A ZFYVE26 Missense_Mutation p.A915S 0.10 deleterious(0) probably_damaging(0.998) TCGA-55-A4DG-01 14 71202711 71202711 C A MAP3K9 Missense_Mutation p.S627I 0.10 tolerated(0.42) benign(0.001) TCGA-55-A4DG-01 14 77242349 77242349 C T VASH1 Silent p.Y215Y 0.29 TCGA-55-A4DG-01 14 81610426 81610426 C A TSHR Missense_Mutation p.P675Q 0.26 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 14 81744537 81744537 C T STON2 Missense_Mutation p.S373N 0.24 tolerated(0.13) benign(0.015) TCGA-55-A4DG-01 14 90778787 90778787 C A NRDE2 Missense_Mutation p.D170Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-55-A4DG-01 14 94568273 94568273 G T IFI27L1 Missense_Mutation p.G59W 0.28 deleterious(0) probably_damaging(0.995) TCGA-55-A4DG-01 14 94700993 94700993 G T PPP4R4 Missense_Mutation p.A240S 0.19 deleterious(0.02) possibly_damaging(0.453) TCGA-55-A4DG-01 15 100345132 100345132 G A CTD-2054N24.2 5'Flank 0.17 TCGA-55-A4DG-01 15 23889876 23889876 G T MAGEL2 Missense_Mutation p.A402D 0.21 tolerated(0.06) benign(0.003) TCGA-55-A4DG-01 15 24924345 24924345 G T NPAP1 Missense_Mutation p.V1111F 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.683) TCGA-55-A4DG-01 15 25318320 25318320 T C SNORD116-9 RNA 0.16 TCGA-55-A4DG-01 15 25453259 25453259 G C SNORD115-21 RNA 0.17 TCGA-55-A4DG-01 15 28510962 28510962 C T HERC2 Splice_Site p.X586_splice 0.09 TCGA-55-A4DG-01 15 29409427 29409427 C A APBA2 3'UTR 0.30 TCGA-55-A4DG-01 15 31369150 31369150 C A TRPM1 Missense_Mutation p.R31L 0.17 deleterious(0) benign(0.381) TCGA-55-A4DG-01 15 38229078 38229078 C T TMCO5A Silent p.G57G 0.09 TCGA-55-A4DG-01 15 41800332 41800332 A T LTK Missense_Mutation p.L395H 0.15 deleterious_low_confidence(0) possibly_damaging(0.594) TCGA-55-A4DG-01 15 43501604 43501605 GG T EPB42 Frame_Shift_Del p.Q264Rfs*9 0.12 TCGA-55-A4DG-01 15 44811447 44811447 C G CTDSPL2 Nonsense_Mutation p.S398* 0.15 TCGA-55-A4DG-01 15 45003745 45003745 A G B2M Translation_Start_Site p.M1? 0.23 deleterious(0) possibly_damaging(0.678) TCGA-55-A4DG-01 15 65443174 65443174 G A CLPX Missense_Mutation p.A630V 0.19 tolerated_low_confidence(0.07) probably_damaging(0.985) TCGA-55-A4DG-01 15 65491151 65491151 G A CILP Silent p.I491I 0.17 TCGA-55-A4DG-01 15 74315342 74315342 C T PML Missense_Mutation p.A259V 0.18 tolerated(0.11) probably_damaging(0.909) TCGA-55-A4DG-01 15 81295678 81295678 G T MESDC1 Missense_Mutation p.V356L 0.27 deleterious_low_confidence(0.03) benign(0.173) TCGA-55-A4DG-01 15 84442290 84442290 C G ADAMTSL3 Missense_Mutation p.R69G 0.27 deleterious(0) benign(0.274) TCGA-55-A4DG-01 15 85406830 85406830 A T ALPK3 Silent p.A1688A 0.12 TCGA-55-A4DG-01 15 86838559 86838559 C A AGBL1 Missense_Mutation p.T719K 0.15 deleterious(0) probably_damaging(0.987) TCGA-55-A4DG-01 15 89424732 89424732 C A HAPLN3 Missense_Mutation p.G117C 0.21 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 15 90378816 90378816 T A C15orf38-AP3S2 Silent p.P372P 0.22 TCGA-55-A4DG-01 16 1396881 1396881 G T BAIAP3 Missense_Mutation p.Q927H 0.29 deleterious(0.02) possibly_damaging(0.811) TCGA-55-A4DG-01 16 15698083 15698083 C A KIAA0430 Missense_Mutation p.C1452F 0.11 deleterious(0.02) possibly_damaging(0.564) TCGA-55-A4DG-01 16 1990778 1990778 C G MSRB1 Splice_Site p.X107_splice 0.31 TCGA-55-A4DG-01 16 1994805 1994805 G T RPL3L 3'UTR 0.12 TCGA-55-A4DG-01 16 21031082 21031082 G C DNAH3 Silent p.T1962T 0.13 TCGA-55-A4DG-01 16 21847265 21847265 G T NPIPB4 Intron 0.33 TCGA-55-A4DG-01 16 23197658 23197658 G C SCNN1G Silent p.A22A 0.22 TCGA-55-A4DG-01 16 24231460 24231460 C A PRKCB 3'UTR 0.18 TCGA-55-A4DG-01 16 24815581 24815581 G T TNRC6A Missense_Mutation p.G1260C 0.12 deleterious(0.02) probably_damaging(0.979) TCGA-55-A4DG-01 16 24831611 24831611 G T TNRC6A Missense_Mutation p.L1744F 0.33 tolerated(0.05) possibly_damaging(0.804) TCGA-55-A4DG-01 16 27373982 27373982 G T IL4R Nonsense_Mutation p.G437* 0.18 TCGA-55-A4DG-01 16 29113412 29113412 C T RRN3P2 RNA 0.36 TCGA-55-A4DG-01 16 2979805 2979805 C T FLYWCH1 Missense_Mutation p.S40F 0.36 tolerated_low_confidence(0.07) benign(0.139) TCGA-55-A4DG-01 16 30133396 30133396 C A MAPK3 Intron 0.18 TCGA-55-A4DG-01 16 33020522 33020522 C A IGHV3OR16-8 Missense_Mutation p.F9L 0.54 deleterious_low_confidence(0.04) benign(0.109) TCGA-55-A4DG-01 16 33020523 33020523 C A IGHV3OR16-8 Missense_Mutation p.L10I 0.54 tolerated_low_confidence(0.06) benign(0.436) TCGA-55-A4DG-01 16 3586373 3586373 G T CLUAP1 3'UTR 0.38 TCGA-55-A4DG-01 16 3591883 3591883 G T NLRC3 Missense_Mutation p.A1093D 0.39 deleterious(0) possibly_damaging(0.908) TCGA-55-A4DG-01 16 46714695 46714695 C A VPS35 Missense_Mutation p.D132Y 0.17 deleterious(0) probably_damaging(0.991) TCGA-55-A4DG-01 16 48329978 48329984 CCTTTGA - LONP2 Frame_Shift_Del p.D481Lfs*6 0.32 TCGA-55-A4DG-01 16 49823410 49823410 C A ZNF423 Missense_Mutation p.V22L 0.34 tolerated_low_confidence(0.49) benign(0.009) TCGA-55-A4DG-01 16 50745427 50745427 G T NOD2 Silent p.L535L 0.50 TCGA-55-A4DG-01 16 55732435 55732435 C A SLC6A2 Missense_Mutation p.L482I 0.14 tolerated(0.09) probably_damaging(0.994) TCGA-55-A4DG-01 16 61747843 61747843 G T CDH8 Missense_Mutation p.A519D 0.27 deleterious(0) probably_damaging(0.985) TCGA-55-A4DG-01 16 70057563 70057563 C A PDXDC2P RNA 0.08 TCGA-55-A4DG-01 16 70726816 70726816 G A VAC14 Silent p.Y698Y 0.44 TCGA-55-A4DG-01 16 71065740 71065740 G T HYDIN Silent p.T870T 0.38 TCGA-55-A4DG-01 16 72184690 72184690 C G PMFBP1 Missense_Mutation p.E151D 0.10 tolerated(0.07) benign(0.281) TCGA-55-A4DG-01 16 72827940 72827940 T C ZFHX3 Missense_Mutation p.M2881V 0.36 unknown(0) TCGA-55-A4DG-01 16 84135355 84135355 C T MBTPS1 Missense_Mutation p.V12M 0.09 deleterious_low_confidence(0.03) benign(0.054) TCGA-55-A4DG-01 16 85953807 85953807 C A IRF8 Missense_Mutation p.R361S 0.49 deleterious(0.03) probably_damaging(0.999) TCGA-55-A4DG-01 16 8738460 8738460 G T METTL22 Missense_Mutation p.D353Y 0.15 deleterious(0) probably_damaging(0.976) TCGA-55-A4DG-01 17 10404629 10404629 C A MYH1 Missense_Mutation p.R1179L 0.54 deleterious(0) possibly_damaging(0.907) TCGA-55-A4DG-01 17 11666894 11666894 C G DNAH9 Missense_Mutation p.A2378G 0.42 benign(0.021) TCGA-55-A4DG-01 17 16342849 16342850 CG T TRPV2 3'Flank 0.11 TCGA-55-A4DG-01 17 18150604 18150604 G C FLII Missense_Mutation p.A852G 0.15 deleterious(0) benign(0.017) TCGA-55-A4DG-01 17 21319480 21319480 G C KCNJ12 Missense_Mutation p.E276Q 0.28 tolerated(0.1) benign(0.016) TCGA-55-A4DG-01 17 26604114 26604114 T A AC061975.8 5'Flank 0.57 TCGA-55-A4DG-01 17 28543233 28543233 A G SLC6A4 Missense_Mutation p.V280A 0.28 tolerated(0.16) probably_damaging(0.999) TCGA-55-A4DG-01 17 29652932 29652932 G T NF1 Missense_Mutation p.D1644Y 0.54 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 17 30669160 30669162 GCG - C17orf75 5'UTR 0.73 TCGA-55-A4DG-01 17 3181544 3181544 T A OR3A2 Missense_Mutation p.H229L 0.32 tolerated(0.15) benign(0.021) TCGA-55-A4DG-01 17 36484465 36484465 G A GPR179 Missense_Mutation p.P1663S 0.50 tolerated(0.07) benign(0.063) TCGA-55-A4DG-01 17 40094864 40094864 C T TTC25 RNA 0.13 TCGA-55-A4DG-01 17 41004682 41004682 G T AOC3 Missense_Mutation p.R441L 0.48 deleterious(0) benign(0.116) TCGA-55-A4DG-01 17 4111310 4111310 T G ANKFY1 Missense_Mutation p.K259T 0.10 deleterious(0) possibly_damaging(0.786) TCGA-55-A4DG-01 17 44068923 44068923 C A MAPT Missense_Mutation p.P493Q 0.56 deleterious(0.01) possibly_damaging(0.876) TCGA-55-A4DG-01 17 4536575 4536575 C G ALOX15 Silent p.L428L 0.54 TCGA-55-A4DG-01 17 47115590 47115590 C A IGF2BP1 Silent p.I154I 0.24 TCGA-55-A4DG-01 17 48269889 48269889 C A COL1A1 Missense_Mutation p.G644C 0.45 unknown(0) TCGA-55-A4DG-01 17 48275550 48275550 C T COL1A1 Missense_Mutation p.R187H 0.07 unknown(0) TCGA-55-A4DG-01 17 48697133 48697133 G T CACNA1G Silent p.G1957G 0.42 TCGA-55-A4DG-01 17 48917614 48917614 C A WFIKKN2 Missense_Mutation p.A322D 0.35 tolerated(0.25) benign(0.001) TCGA-55-A4DG-01 17 49731019 49731019 C A CA10 Missense_Mutation p.V182F 0.36 deleterious(0.01) benign(0.038) TCGA-55-A4DG-01 17 51902200 51902200 C A KIF2B Silent p.P602P 0.39 TCGA-55-A4DG-01 17 55693446 55693446 G T MSI2 Splice_Site p.X218_splice 0.44 TCGA-55-A4DG-01 17 59543214 59543214 G T TBX4 Missense_Mutation p.G106C 0.59 deleterious(0) probably_damaging(0.956) TCGA-55-A4DG-01 17 61972370 61972370 C A CSH1 3'UTR 0.24 TCGA-55-A4DG-01 17 62049500 62049500 C G SCN4A Missense_Mutation p.V160L 0.50 tolerated(0.18) benign(0.006) TCGA-55-A4DG-01 17 63189665 63189665 G T RGS9 Missense_Mutation p.V251L 0.36 tolerated(0.34) benign(0.013) TCGA-55-A4DG-01 17 72350577 72350577 G T KIF19 Missense_Mutation p.G862V 0.57 tolerated(0.37) benign(0.013) TCGA-55-A4DG-01 17 74466034 74466034 C A AANAT Silent p.R247R 0.40 TCGA-55-A4DG-01 17 7578457 7578457 C A TP53 Missense_Mutation p.R158L 0.54 deleterious(0) probably_damaging(0.986) TCGA-55-A4DG-01 17 7644225 7644225 C A DNAH2 Missense_Mutation p.P535Q 0.19 benign(0.167) TCGA-55-A4DG-01 17 8108672 8108672 G A AURKB Silent p.P241P 0.48 TCGA-55-A4DG-01 17 8222448 8222450 CAC AA ARHGEF15 Frame_Shift_Del p.H721Tfs*74 0.30 TCGA-55-A4DG-01 17 8285577 8285577 G A RPL26 Missense_Mutation p.H18Y 0.11 tolerated(0.06) benign(0.016) TCGA-55-A4DG-01 18 19995861 19995861 A G CTAGE1 Silent p.N638N 0.18 TCGA-55-A4DG-01 18 28934531 28934531 C A DSG1 Missense_Mutation p.P791H 0.25 tolerated(0.26) possibly_damaging(0.789) TCGA-55-A4DG-01 18 28934532 28934532 C T DSG1 Silent p.P791P 0.25 TCGA-55-A4DG-01 18 29770053 29770053 C A MEP1B Missense_Mutation p.S7Y 0.31 tolerated(1) benign(0.001) TCGA-55-A4DG-01 18 31803230 31803230 C G NOL4 5'UTR 0.27 TCGA-55-A4DG-01 18 43219806 43219806 G A SLC14A2 Silent p.S313S 0.19 TCGA-55-A4DG-01 18 694274 694274 C G ENOSF1 Missense_Mutation p.D145H 0.13 deleterious(0) probably_damaging(0.998) TCGA-55-A4DG-01 18 72997702 72997702 G T TSHZ1 Missense_Mutation p.A69S 0.30 tolerated(0.13) benign(0.019) TCGA-55-A4DG-01 18 74631780 74631780 G T ZNF236 Missense_Mutation p.R1106L 0.24 deleterious(0.03) probably_damaging(0.959) TCGA-55-A4DG-01 18 76753891 76753891 C A SALL3 Missense_Mutation p.P634T 0.50 deleterious(0.03) possibly_damaging(0.49) TCGA-55-A4DG-01 18 76754985 76754985 C G SALL3 Missense_Mutation p.S998R 0.37 deleterious(0.03) benign(0.039) TCGA-55-A4DG-01 19 10097033 10097033 C - COL5A3 Frame_Shift_Del p.Q771Rfs*44 0.36 TCGA-55-A4DG-01 19 10129433 10129433 G T RDH8 Missense_Mutation p.G117W 0.05 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 19 10131393 10131393 T A RDH8 Missense_Mutation p.F171I 0.17 deleterious(0) probably_damaging(0.997) TCGA-55-A4DG-01 19 1041230 1041230 C T ABCA7 5'UTR 0.14 TCGA-55-A4DG-01 19 14043740 14043740 G A PODNL1 Silent p.N439N 0.57 TCGA-55-A4DG-01 19 14574749 14574749 G T PKN1 Silent p.G541G 0.37 TCGA-55-A4DG-01 19 1487194 1487194 C A PCSK4 Silent p.T267T 0.36 TCGA-55-A4DG-01 19 14952633 14952633 C T OR7A10 Silent p.E19E 0.11 TCGA-55-A4DG-01 19 17081753 17081753 G A CPAMD8 Nonsense_Mutation p.Q768* 0.26 TCGA-55-A4DG-01 19 17476197 17476197 G T PLVAP Missense_Mutation p.D359E 0.37 tolerated(0.44) benign(0.167) TCGA-55-A4DG-01 19 1806128 1806128 C T ATP8B3 Missense_Mutation p.V240M 0.25 deleterious(0) possibly_damaging(0.881) TCGA-55-A4DG-01 19 2328602 2328602 C G LSM7 5'UTR 0.25 TCGA-55-A4DG-01 19 23837315 23837315 C A ZNF675 Missense_Mutation p.Q140H 0.33 tolerated(0.19) possibly_damaging(0.648) TCGA-55-A4DG-01 19 2408537 2408537 C A TMPRSS9 Silent p.I308I 0.31 TCGA-55-A4DG-01 19 2989616 2989616 G T TLE6 Silent p.V359V 0.09 TCGA-55-A4DG-01 19 30935306 30935306 C A ZNF536 Nonsense_Mutation p.C279* 0.25 TCGA-55-A4DG-01 19 32954383 32954383 G C DPY19L3 Missense_Mutation p.L478F 0.21 tolerated(0.39) benign(0.12) TCGA-55-A4DG-01 19 3600594 3600594 C A TBXA2R Silent p.R13R 0.13 TCGA-55-A4DG-01 19 37038046 37038046 G C ZNF529 Missense_Mutation p.H472D 0.32 deleterious(0) possibly_damaging(0.637) TCGA-55-A4DG-01 19 3771572 3771572 G T RAX2 Missense_Mutation p.R57S 0.36 deleterious(0) probably_damaging(0.982) TCGA-55-A4DG-01 19 38189064 38189064 A - ZNF607 Frame_Shift_Del p.S656Rfs*68 0.34 TCGA-55-A4DG-01 19 38943521 38943521 C A RYR1 Missense_Mutation p.P436H 0.23 probably_damaging(0.976) TCGA-55-A4DG-01 19 38946365 38946365 C T RYR1 Silent p.L589L 0.19 TCGA-55-A4DG-01 19 39395971 39395971 G C NFKBIB Missense_Mutation p.A139P 0.17 tolerated(0.25) possibly_damaging(0.685) TCGA-55-A4DG-01 19 40146597 40146597 G - LGALS16 5'UTR 0.29 TCGA-55-A4DG-01 19 40392654 40392654 C - FCGBP Frame_Shift_Del p.G2617Afs*69 0.10 TCGA-55-A4DG-01 19 43097784 43097784 G T CEACAM8 Missense_Mutation p.N111K 0.32 tolerated(0.08) possibly_damaging(0.827) TCGA-55-A4DG-01 19 43349213 43349213 G C PSG10P RNA 0.15 TCGA-55-A4DG-01 19 43579571 43579571 T G PSG2 Missense_Mutation p.Y215S 0.15 deleterious(0) probably_damaging(0.999) TCGA-55-A4DG-01 19 43866343 43866343 G A CD177 3'UTR 0.13 TCGA-55-A4DG-01 19 43969776 43969776 G C LYPD3 5'UTR 0.19 TCGA-55-A4DG-01 19 46215705 46215705 G A FBXO46 Missense_Mutation p.A350V 0.17 tolerated(0.09) possibly_damaging(0.873) TCGA-55-A4DG-01 19 48337737 48337737 G T TPRX2P Missense_Mutation p.V13F 0.15 deleterious_low_confidence(0.02) unknown(0) TCGA-55-A4DG-01 19 4839158 4839158 C G PLIN3 3'UTR 0.21 TCGA-55-A4DG-01 19 48908574 48908574 C G GRIN2D Missense_Mutation p.A350G 0.22 tolerated(0.39) benign(0.018) TCGA-55-A4DG-01 19 50394674 50394674 C T IL4I1 Silent p.R230R 0.16 TCGA-55-A4DG-01 19 51192119 51192119 C A SHANK1 Missense_Mutation p.M718I 0.43 benign(0.005) TCGA-55-A4DG-01 19 51512807 51512807 C A KLK9 5'UTR 0.15 TCGA-55-A4DG-01 19 51918291 51918291 C G SIGLEC10 Missense_Mutation p.A468P 0.18 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 19 52004915 52004915 G A SIGLEC12 Silent p.L25L 0.15 TCGA-55-A4DG-01 19 52376808 52376808 G C ZNF577 Silent p.L145L 0.14 TCGA-55-A4DG-01 19 52496471 52496471 C A ZNF615 Nonsense_Mutation p.G631* 0.12 TCGA-55-A4DG-01 19 54225466 54225466 G C MIR520G RNA 0.12 TCGA-55-A4DG-01 19 54304538 54304538 C T NLRP12 Missense_Mutation p.G900E 0.12 deleterious(0) probably_damaging(0.999) TCGA-55-A4DG-01 19 54445350 54445350 C T CACNG7 Missense_Mutation p.R211C 0.37 deleterious(0) probably_damaging(0.931) TCGA-55-A4DG-01 19 54822753 54822753 A G LILRA5 Missense_Mutation p.Y215H 0.11 tolerated(0.05) probably_damaging(0.991) TCGA-55-A4DG-01 19 55087297 55087297 C A LILRA2 Missense_Mutation p.L326I 0.32 deleterious(0.04) benign(0.14) TCGA-55-A4DG-01 19 55143181 55143181 G C LILRB1 Missense_Mutation p.G101R 0.14 tolerated(0.38) benign(0.001) TCGA-55-A4DG-01 19 56407339 56407339 G T NLRP13 Nonsense_Mutation p.S1035* 0.32 TCGA-55-A4DG-01 19 57175054 57175054 G T ZNF835 Missense_Mutation p.P505T 0.17 tolerated(0.05) benign(0) TCGA-55-A4DG-01 19 57646839 57646839 C A ZIM3 Missense_Mutation p.R289M 0.11 deleterious(0.02) possibly_damaging(0.5) TCGA-55-A4DG-01 19 58190208 58190208 C A ZSCAN4 Missense_Mutation p.R413S 0.22 deleterious(0) possibly_damaging(0.807) TCGA-55-A4DG-01 19 58579179 58579179 T A ZNF135 Missense_Mutation p.C467S 0.09 deleterious(0) probably_damaging(0.995) TCGA-55-A4DG-01 19 7806028 7806028 C T CD209 3'UTR 0.26 TCGA-55-A4DG-01 19 8808328 8808328 G A ACTL9 Missense_Mutation p.P242S 0.13 tolerated(0.79) benign(0.008) TCGA-55-A4DG-01 19 9002608 9002608 C A MUC16 Missense_Mutation p.S13403I 0.13 probably_damaging(0.943) TCGA-55-A4DG-01 19 9061382 9061382 G T MUC16 Silent p.S8688S 0.19 TCGA-55-A4DG-01 19 9073156 9073156 G T MUC16 Missense_Mutation p.P4764T 0.22 unknown(0) TCGA-55-A4DG-01 19 9088867 9088867 G A MUC16 Missense_Mutation p.T983I 0.13 unknown(0) TCGA-55-A4DG-01 19 9730232 9730232 C T ZNF561 5'UTR 0.55 TCGA-55-A4DG-01 1 103404644 103404644 C A COL11A1 Missense_Mutation p.G1129C 0.43 unknown(0) TCGA-55-A4DG-01 1 10355738 10355738 A T KIF1B Missense_Mutation p.E518V 0.13 deleterious(0.03) possibly_damaging(0.631) TCGA-55-A4DG-01 1 107937887 107937887 T A NTNG1 Nonsense_Mutation p.Y333* 0.10 TCGA-55-A4DG-01 1 115229485 115229485 G T AMPD1 Missense_Mutation p.L121I 0.11 tolerated(0.44) benign(0.001) TCGA-55-A4DG-01 1 117633165 117633165 C T TTF2 Silent p.P836P 0.27 TCGA-55-A4DG-01 1 118629350 118629350 C A SPAG17 Missense_Mutation p.G519C 0.45 tolerated(0.18) probably_damaging(0.998) TCGA-55-A4DG-01 1 11898431 11898431 G A CLCN6 Missense_Mutation p.E779K 0.12 tolerated(0.09) possibly_damaging(0.509) TCGA-55-A4DG-01 1 119466122 119466122 C A TBX15 Silent p.G160G 0.14 TCGA-55-A4DG-01 1 120438671 120438671 C G ADAM30 Missense_Mutation p.G97R 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-55-A4DG-01 1 12919054 12919054 C A PRAMEF2 Missense_Mutation p.L64I 0.38 deleterious(0) probably_damaging(0.996) TCGA-55-A4DG-01 1 145415490 145415490 C A HFE2 Missense_Mutation p.F103L 0.43 deleterious(0) benign(0.388) TCGA-55-A4DG-01 1 149761800 149761800 T C FCGR1A Silent p.A250A 0.60 TCGA-55-A4DG-01 1 150445545 150445545 A T RPRD2 Missense_Mutation p.H1374L 0.10 tolerated_low_confidence(0.57) benign(0.036) TCGA-55-A4DG-01 1 152185596 152185596 G A HRNR Missense_Mutation p.P2837S 0.10 unknown(0) TCGA-55-A4DG-01 1 152191728 152191728 G T HRNR Missense_Mutation p.Q793K 0.07 unknown(0) TCGA-55-A4DG-01 1 152191729 152191729 G T HRNR Silent p.G792G 0.07 TCGA-55-A4DG-01 1 152326307 152326307 C T FLG2 Missense_Mutation p.G1319R 0.20 possibly_damaging(0.766) TCGA-55-A4DG-01 1 152538490 152538490 G T LCE3E Silent p.R65R 0.09 TCGA-55-A4DG-01 1 152681787 152681787 A G LCE4A Missense_Mutation p.Y79C 0.08 tolerated_low_confidence(0.26) unknown(0) TCGA-55-A4DG-01 1 153431413 153431413 T A S100A7 Missense_Mutation p.K26M 0.24 tolerated(0.2) benign(0.042) TCGA-55-A4DG-01 1 153954632 153954632 G - RAB13 Frame_Shift_Del p.S186Vfs*4 0.11 TCGA-55-A4DG-01 1 154315331 154315331 G T ATP8B2 Missense_Mutation p.W482C 0.09 tolerated(0.13) possibly_damaging(0.843) TCGA-55-A4DG-01 1 156618606 156618606 C T BCAN Missense_Mutation p.T339I 0.14 deleterious(0) probably_damaging(0.993) TCGA-55-A4DG-01 1 156812256 156812256 G C INSRR Silent p.V1057V 0.18 TCGA-55-A4DG-01 1 156814032 156814032 G A INSRR Silent p.A926A 0.22 TCGA-55-A4DG-01 1 15771157 15771157 G T CTRC Missense_Mutation p.A184S 0.45 tolerated(0.21) benign(0.016) TCGA-55-A4DG-01 1 158224495 158224495 C - CD1A Frame_Shift_Del p.P13Qfs*37 0.14 TCGA-55-A4DG-01 1 158226679 158226679 G T CD1A Missense_Mutation p.M236I 0.07 deleterious(0.01) benign(0.27) TCGA-55-A4DG-01 1 158549195 158549195 G T OR10X1 Nonsense_Mutation p.C165* 0.10 TCGA-55-A4DG-01 1 158669566 158669566 G T OR6K2 Missense_Mutation p.L293M 0.22 deleterious(0) probably_damaging(0.992) TCGA-55-A4DG-01 1 159175265 159175265 C G DARC Silent p.P14P 0.09 TCGA-55-A4DG-01 1 160106048 160106048 C T ATP1A2 Silent p.I817I 0.09 TCGA-55-A4DG-01 1 160709092 160709092 A T SLAMF7 Translation_Start_Site p.M1? 0.15 deleterious(0) benign(0.046) TCGA-55-A4DG-01 1 161953436 161953436 C G OLFML2B 3'UTR 0.09 TCGA-55-A4DG-01 1 16462191 16462191 G C EPHA2 Missense_Mutation p.Q463E 0.16 deleterious(0.04) benign(0.023) TCGA-55-A4DG-01 1 169495179 169495179 C A F5 Missense_Mutation p.Q1892H 0.53 deleterious(0.05) probably_damaging(1) TCGA-55-A4DG-01 1 171484912 171484912 G T PRRC2C Missense_Mutation p.S145I 0.12 unknown(0) TCGA-55-A4DG-01 1 17431489 17431489 G C PADI2 Missense_Mutation p.R54G 0.42 tolerated(0.3) benign(0) TCGA-55-A4DG-01 1 175348772 175348772 C A TNR Missense_Mutation p.V627L 0.53 tolerated(0.18) possibly_damaging(0.508) TCGA-55-A4DG-01 1 176050385 176050385 C T RFWD2 Missense_Mutation p.E394K 0.10 tolerated(0.13) benign(0.168) TCGA-55-A4DG-01 1 176564349 176564349 G T PAPPA2 Missense_Mutation p.G537C 0.22 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 1 17708503 17708503 C A PADI6 RNA 0.14 TCGA-55-A4DG-01 1 179347789 179347789 A T AXDND1 Missense_Mutation p.Y131F 0.11 tolerated(0.11) possibly_damaging(0.636) TCGA-55-A4DG-01 1 180885573 180885573 T G KIAA1614 Missense_Mutation p.S112A 0.19 tolerated(0.14) benign(0.067) TCGA-55-A4DG-01 1 181480531 181480531 G A CACNA1E Missense_Mutation p.G133R 0.06 deleterious(0) probably_damaging(0.988) TCGA-55-A4DG-01 1 181732621 181732621 G C CACNA1E Missense_Mutation p.G1590A 0.11 deleterious(0.03) probably_damaging(0.939) TCGA-55-A4DG-01 1 182026998 182026998 C A ZNF648 Missense_Mutation p.D50Y 0.10 deleterious(0.01) possibly_damaging(0.62) TCGA-55-A4DG-01 1 182026999 182026999 A G ZNF648 Silent p.A49A 0.10 TCGA-55-A4DG-01 1 186010216 186010216 G T HMCN1 Silent p.V2084V 0.08 TCGA-55-A4DG-01 1 19062397 19062397 C - PAX7 Frame_Shift_Del p.V478Sfs*34 0.09 TCGA-55-A4DG-01 1 197404356 197404356 G A CRB1 Silent p.Q1121Q 0.47 TCGA-55-A4DG-01 1 200950184 200950184 T A KIF21B Missense_Mutation p.T1295S 0.14 tolerated(0.48) probably_damaging(0.978) TCGA-55-A4DG-01 1 20474846 20474846 G T PLA2G2F Missense_Mutation p.E196D 0.09 deleterious_low_confidence(0.05) possibly_damaging(0.485) TCGA-55-A4DG-01 1 204926908 204926909 CC T NFASC Frame_Shift_Del p.H221Tfs*111 0.32 TCGA-55-A4DG-01 1 205031666 205031666 C A CNTN2 Silent p.T403T 0.21 TCGA-55-A4DG-01 1 205039171 205039171 G T CNTN2 Missense_Mutation p.V805L 0.11 deleterious(0.01) benign(0.038) TCGA-55-A4DG-01 1 207103605 207103605 G A PIGR 3'UTR 0.12 TCGA-55-A4DG-01 1 213415529 213415529 G T RPS6KC1 Missense_Mutation p.G904C 0.61 deleterious(0.01) probably_damaging(0.98) TCGA-55-A4DG-01 1 215824052 215824052 G C USH2A Missense_Mutation p.T4742R 0.10 benign(0.006) TCGA-55-A4DG-01 1 216373233 216373233 T C USH2A Missense_Mutation p.I1183V 0.09 benign(0.003) TCGA-55-A4DG-01 1 220310248 220310248 G T IARS2 Nonsense_Mutation p.G682* 0.55 TCGA-55-A4DG-01 1 220310249 220310249 G T IARS2 Missense_Mutation p.G682V 0.52 deleterious(0) probably_damaging(0.997) TCGA-55-A4DG-01 1 220752824 220752824 C T MARK1 Silent p.Y60Y 0.11 TCGA-55-A4DG-01 1 22313088 22313088 C A CELA3B Missense_Mutation p.T236N 0.23 deleterious(0.03) probably_damaging(0.981) TCGA-55-A4DG-01 1 22313089 22313089 C A CELA3B Silent p.T236T 0.23 TCGA-55-A4DG-01 1 228238533 228238533 A G WNT3A Missense_Mutation p.M164V 0.18 tolerated(0.29) benign(0.043) TCGA-55-A4DG-01 1 228346830 228346830 G C GJC2 3'UTR 0.60 TCGA-55-A4DG-01 1 228509442 228509442 G C OBSCN Missense_Mutation p.G5924A 0.08 probably_damaging(0.999) TCGA-55-A4DG-01 1 230472933 230472933 G T PGBD5 Missense_Mutation p.N263K 0.47 deleterious(0.02) benign(0.299) TCGA-55-A4DG-01 1 231473128 231473128 C A EXOC8 Nonsense_Mutation p.E122* 0.11 TCGA-55-A4DG-01 1 237813250 237813250 C A RYR2 Missense_Mutation p.T2529K 0.12 probably_damaging(0.989) TCGA-55-A4DG-01 1 237837454 237837454 C A RYR2 Silent p.A2883A 0.20 TCGA-55-A4DG-01 1 240656258 240656258 C A GREM2 3'UTR 0.63 TCGA-55-A4DG-01 1 240656266 240656266 C A GREM2 3'UTR 0.20 TCGA-55-A4DG-01 1 241907701 241907701 G T WDR64 Nonsense_Mutation p.E483* 0.52 TCGA-55-A4DG-01 1 242159486 242159486 G T MAP1LC3C Missense_Mutation p.D141E 0.09 tolerated_low_confidence(0.29) benign(0.001) TCGA-55-A4DG-01 1 247150744 247150744 C A ZNF695 Missense_Mutation p.G358V 0.15 deleterious(0.01) probably_damaging(1) TCGA-55-A4DG-01 1 247150745 247150745 C A ZNF695 Nonsense_Mutation p.G358* 0.15 TCGA-55-A4DG-01 1 247614726 247614726 C G OR2B11 Missense_Mutation p.A187P 0.19 deleterious(0.04) probably_damaging(0.999) TCGA-55-A4DG-01 1 247695387 247695387 G - OR2C3 Frame_Shift_Del p.L145* 0.13 TCGA-55-A4DG-01 1 247712502 247712502 T A GCSAML Missense_Mutation p.N3K 0.11 deleterious(0) possibly_damaging(0.859) TCGA-55-A4DG-01 1 247978213 247978213 C A OR14A16 Silent p.V273V 0.11 TCGA-55-A4DG-01 1 247978310 247978310 G T OR14A16 Missense_Mutation p.P241Q 0.13 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 1 248059580 248059580 C G OR2W3 Missense_Mutation p.A231G 0.25 deleterious(0.05) benign(0.042) TCGA-55-A4DG-01 1 248224267 248224267 G T OR2L3 Missense_Mutation p.G95V 0.14 deleterious(0.01) benign(0.399) TCGA-55-A4DG-01 1 248790066 248790066 C A OR2T11 Missense_Mutation p.A122S 0.09 deleterious(0) probably_damaging(0.994) TCGA-55-A4DG-01 1 32542878 32542878 C T TMEM39B Silent p.F183F 0.16 TCGA-55-A4DG-01 1 34123632 34123632 C T CSMD2 Missense_Mutation p.G1414D 0.15 deleterious(0) probably_damaging(0.994) TCGA-55-A4DG-01 1 35652667 35652667 C A SFPQ Missense_Mutation p.G641C 0.15 deleterious(0) probably_damaging(0.979) TCGA-55-A4DG-01 1 35653584 35653584 T A SFPQ Missense_Mutation p.Y602F 0.15 tolerated(0.31) possibly_damaging(0.636) TCGA-55-A4DG-01 1 35936474 35936474 T A KIAA0319L Missense_Mutation p.K368I 0.40 tolerated(0.07) possibly_damaging(0.857) TCGA-55-A4DG-01 1 44468288 44468288 C A SLC6A9 Missense_Mutation p.V325L 0.09 tolerated(0.17) probably_damaging(0.944) TCGA-55-A4DG-01 1 44595232 44595232 G T KLF17 Missense_Mutation p.G97C 0.39 deleterious(0.01) possibly_damaging(0.711) TCGA-55-A4DG-01 1 44595233 44595233 G T KLF17 Missense_Mutation p.G97V 0.38 tolerated(0.07) benign(0.049) TCGA-55-A4DG-01 1 46775891 46775891 G A UQCRH Missense_Mutation p.R49Q 0.19 tolerated(0.11) benign(0.013) TCGA-55-A4DG-01 1 50661258 50661258 C A ELAVL4 Silent p.I195I 0.41 TCGA-55-A4DG-01 1 52344173 52344173 A T NRD1 Missense_Mutation p.S39T 0.15 tolerated_low_confidence(0.13) unknown(0) TCGA-55-A4DG-01 1 70504160 70504160 A T LRRC7 Nonsense_Mutation p.R847* 0.52 TCGA-55-A4DG-01 1 70504657 70504657 T C LRRC7 Silent p.S1012S 0.15 TCGA-55-A4DG-01 1 70505211 70505211 G T LRRC7 Missense_Mutation p.R1197M 0.12 deleterious(0) probably_damaging(0.997) TCGA-55-A4DG-01 1 76356495 76356495 C A MSH4 Missense_Mutation p.L781I 0.17 deleterious(0.01) probably_damaging(0.921) TCGA-55-A4DG-01 1 8074510 8074510 G A ERRFI1 Intron 0.19 TCGA-55-A4DG-01 1 82436070 82436070 G T LPHN2 Missense_Mutation p.G919C 0.10 deleterious(0) probably_damaging(0.979) TCGA-55-A4DG-01 1 8921448 8921448 T A ENO1 Missense_Mutation p.R426W 0.38 deleterious_low_confidence(0) possibly_damaging(0.75) TCGA-55-A4DG-01 1 89847279 89847279 G A GBP6 Missense_Mutation p.V300I 0.28 tolerated(0.1) possibly_damaging(0.69) TCGA-55-A4DG-01 20 1629914 1629914 G T SIRPG Missense_Mutation p.P72T 0.55 deleterious(0.03) benign(0.177) TCGA-55-A4DG-01 20 21142961 21142961 G T RP4-777D9.2 Intron 0.64 TCGA-55-A4DG-01 20 23472329 23472329 C A CST8 Missense_Mutation p.L9M 0.52 tolerated(0.1) possibly_damaging(0.86) TCGA-55-A4DG-01 20 2361622 2361622 G T TGM6 Splice_Site p.X3_splice 0.36 TCGA-55-A4DG-01 20 23967163 23967163 A G GGTLC1 Missense_Mutation p.F29S 0.35 deleterious(0.01) possibly_damaging(0.908) TCGA-55-A4DG-01 20 25456920 25456920 C A NINL Missense_Mutation p.G1003C 0.48 tolerated(0.1) possibly_damaging(0.57) TCGA-55-A4DG-01 20 29956498 29956498 C A DEFB118 Silent p.P15P 0.56 TCGA-55-A4DG-01 20 30064292 30064292 G T REM1 Missense_Mutation p.R15L 0.33 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 20 30408087 30408087 A G MYLK2 Missense_Mutation p.T71A 0.55 tolerated_low_confidence(0.8) benign(0.001) TCGA-55-A4DG-01 20 31897615 31897615 G T BPIFB1 3'UTR 0.47 TCGA-55-A4DG-01 20 32357950 32357950 G T ZNF341 Nonsense_Mutation p.E485* 0.54 TCGA-55-A4DG-01 20 35563483 35563483 C A SAMHD1 Missense_Mutation p.G153V 0.61 tolerated(0.13) benign(0.011) TCGA-55-A4DG-01 20 36028594 36028594 G T SRC Missense_Mutation p.Q312H 0.60 deleterious(0.02) probably_damaging(0.994) TCGA-55-A4DG-01 20 3652825 3652825 G T ADAM33 Missense_Mutation p.A518E 0.44 tolerated(0.06) benign(0.08) TCGA-55-A4DG-01 20 36776406 36776406 C A TGM2 Missense_Mutation p.R213L 0.44 tolerated(0.1) benign(0.073) TCGA-55-A4DG-01 20 4167442 4167442 C G SMOX Intron 0.55 TCGA-55-A4DG-01 20 42969881 42969881 C G R3HDML Missense_Mutation p.Q103E 0.08 tolerated(0.46) benign(0.098) TCGA-55-A4DG-01 20 5283180 5283180 T A PROKR2 Nonsense_Mutation p.K221* 0.51 TCGA-55-A4DG-01 20 57036289 57036289 C T APCDD1L Missense_Mutation p.V355I 0.19 deleterious(0) probably_damaging(0.996) TCGA-55-A4DG-01 20 9400470 9400470 G T PLCB4 Missense_Mutation p.D678Y 0.42 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 21 19770542 19770542 C T TMPRSS15 Missense_Mutation p.V84I 0.16 tolerated(0.15) benign(0.042) TCGA-55-A4DG-01 21 22841048 22841048 A T NCAM2 Missense_Mutation p.T614S 0.14 deleterious(0) benign(0.032) TCGA-55-A4DG-01 21 27269912 27269912 T A APP Silent p.S679S 0.22 TCGA-55-A4DG-01 21 31062100 31062100 C G GRIK1 Silent p.L164L 0.26 TCGA-55-A4DG-01 21 31986133 31986133 C A KRTAP6-1 Missense_Mutation p.G31C 0.23 unknown(0) TCGA-55-A4DG-01 21 32119422 32119422 G T KRTAP21-2 Nonsense_Mutation p.Y33* 0.24 TCGA-55-A4DG-01 21 32638885 32638885 T G TIAM1 Missense_Mutation p.Y135S 0.14 tolerated_low_confidence(0.28) benign(0.002) TCGA-55-A4DG-01 21 35186367 35186367 G T ITSN1 Silent p.V906V 0.13 TCGA-55-A4DG-01 21 37603371 37603371 C - DOPEY2 Frame_Shift_Del p.P764Lfs*31 0.10 TCGA-55-A4DG-01 21 38593745 38593745 A G DSCR3 3'Flank 0.33 TCGA-55-A4DG-01 21 44117587 44117587 G T PDE9A Intron 0.32 TCGA-55-A4DG-01 21 44427664 44427664 G T PKNOX1 Nonsense_Mutation p.G39* 0.33 TCGA-55-A4DG-01 21 45947289 45947289 G C TSPEAR Silent p.A345A 0.41 TCGA-55-A4DG-01 22 16287604 16287604 G T POTEH Silent p.L94L 0.08 TCGA-55-A4DG-01 22 16287817 16287817 C G POTEH Missense_Mutation p.K23N 0.09 deleterious_low_confidence(0) probably_damaging(0.918) TCGA-55-A4DG-01 22 23077405 23077405 C A IGLV2-18 Missense_Mutation p.P61Q 0.18 deleterious_low_confidence(0.02) benign(0.158) TCGA-55-A4DG-01 22 26165077 26165077 C A MYO18B Silent p.P398P 0.28 TCGA-55-A4DG-01 22 26165078 26165078 C T MYO18B Nonsense_Mutation p.Q399* 0.28 TCGA-55-A4DG-01 22 26743881 26743881 T A SEZ6L Splice_Site p.X803_splice 0.15 TCGA-55-A4DG-01 22 29191682 29191682 T A XBP1 Missense_Mutation p.Q213L 0.33 tolerated(0.07) possibly_damaging(0.901) TCGA-55-A4DG-01 22 29709882 29709882 T A RASL10A Missense_Mutation p.K105M 0.25 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 22 29838149 29838149 A G RFPL1 3'UTR 0.18 TCGA-55-A4DG-01 22 32831693 32831693 C G BPIFC Missense_Mutation p.E308Q 0.12 deleterious(0.04) probably_damaging(0.948) TCGA-55-A4DG-01 22 36155959 36155959 G A RBFOX2 Missense_Mutation p.P362L 0.39 benign(0.155) TCGA-55-A4DG-01 22 38823151 38823151 G A KCNJ4 Silent p.Y329Y 0.17 TCGA-55-A4DG-01 22 41077374 41077374 G T MCHR1 Missense_Mutation p.W237C 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-55-A4DG-01 22 43604161 43604161 C A SCUBE1 Missense_Mutation p.R884L 0.38 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 22 50926118 50926118 A T MIOX Missense_Mutation p.T42S 0.21 tolerated(0.38) benign(0.004) TCGA-55-A4DG-01 2 103040277 103040277 C A IL18RAP Missense_Mutation p.S26Y 0.21 tolerated(0.94) benign(0.004) TCGA-55-A4DG-01 2 106739513 106739513 C A UXS1 Missense_Mutation p.W224C 0.06 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 2 109463246 109463246 G T CCDC138 Missense_Mutation p.G459V 0.17 deleterious(0.01) probably_damaging(0.979) TCGA-55-A4DG-01 2 112615964 112615964 T A ANAPC1 Missense_Mutation p.Q426L 0.39 deleterious(0.04) benign(0.046) TCGA-55-A4DG-01 2 11284268 11284268 G T C2orf50 3'UTR 0.15 TCGA-55-A4DG-01 2 114500211 114500211 T C SLC35F5 Intron 0.58 TCGA-55-A4DG-01 2 116497460 116497460 G T DPP10 Silent p.P285P 0.22 TCGA-55-A4DG-01 2 120388194 120388194 A C PCDP1 Missense_Mutation p.K594Q 0.33 tolerated(0.54) benign(0.008) TCGA-55-A4DG-01 2 120718399 120718399 C - PTPN4 Frame_Shift_Del p.S718Afs*3 0.16 TCGA-55-A4DG-01 2 131356269 131356269 C G CFC1 Missense_Mutation p.A65P 0.13 tolerated(0.28) benign(0.013) TCGA-55-A4DG-01 2 131520459 131520459 C T AMER3 Missense_Mutation p.P272S 0.13 tolerated(0.85) benign(0.314) TCGA-55-A4DG-01 2 133403028 133403028 G C GPR39 Missense_Mutation p.R404T 0.22 tolerated(0.48) benign(0.005) TCGA-55-A4DG-01 2 137748480 137748480 G A THSD7B Intron 0.27 TCGA-55-A4DG-01 2 139326799 139326799 G T SPOPL 3'UTR 0.41 TCGA-55-A4DG-01 2 139326800 139326800 G T SPOPL 3'UTR 0.41 TCGA-55-A4DG-01 2 141114003 141114003 C A LRP1B Missense_Mutation p.G3813V 0.40 probably_damaging(0.953) TCGA-55-A4DG-01 2 141459747 141459747 C A LRP1B Missense_Mutation p.V2089F 0.18 benign(0.004) TCGA-55-A4DG-01 2 141819810 141819810 G T LRP1B Missense_Mutation p.A349D 0.34 possibly_damaging(0.665) TCGA-55-A4DG-01 2 1507768 1507768 C A TPO Missense_Mutation p.A812E 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-55-A4DG-01 2 159663591 159663591 A G DAPL1 Missense_Mutation p.I57M 0.19 tolerated(1) benign(0.011) TCGA-55-A4DG-01 2 160714977 160714977 C A LY75-CD302 Missense_Mutation p.R760M 0.29 tolerated(0.19) probably_damaging(0.983) TCGA-55-A4DG-01 2 160803187 160803187 G A PLA2R1 Intron 0.38 TCGA-55-A4DG-01 2 163003954 163003954 G A GCG Nonsense_Mutation p.Q55* 0.12 TCGA-55-A4DG-01 2 166788355 166788355 C A TTC21B Missense_Mutation p.K269N 0.33 tolerated(0.26) benign(0.13) TCGA-55-A4DG-01 2 168102461 168102461 C A XIRP2 Missense_Mutation p.S1520Y 0.32 probably_damaging(0.979) TCGA-55-A4DG-01 2 168105187 168105187 C - XIRP2 Frame_Shift_Del p.L2429Ffs*5 0.16 TCGA-55-A4DG-01 2 168114405 168114405 G C XIRP2 3'UTR 0.43 TCGA-55-A4DG-01 2 170044635 170044635 C A LRP2 Missense_Mutation p.G3058V 0.37 possibly_damaging(0.71) TCGA-55-A4DG-01 2 170044637 170044637 A C LRP2 Missense_Mutation p.C3057W 0.37 probably_damaging(1) TCGA-55-A4DG-01 2 172725332 172725332 T A SLC25A12 Missense_Mutation p.Y23F 0.09 tolerated(0.15) benign(0.167) TCGA-55-A4DG-01 2 176958368 176958368 G T HOXD13 Missense_Mutation p.Q250H 0.31 tolerated(0.07) benign(0.019) TCGA-55-A4DG-01 2 179255867 179255867 T A OSBPL6 Missense_Mutation p.V815E 0.10 deleterious(0) probably_damaging(0.97) TCGA-55-A4DG-01 2 179444007 179444007 A T TTN Missense_Mutation p.W22584R 0.37 TCGA-55-A4DG-01 2 182347373 182347373 G T ITGA4 Missense_Mutation p.G346C 0.21 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 2 185803529 185803529 C A ZNF804A Missense_Mutation p.P1136T 0.11 deleterious(0) probably_damaging(0.992) TCGA-55-A4DG-01 2 189599350 189599351 GG T DIRC1 Frame_Shift_Del p.N99Kfs*3 0.32 TCGA-55-A4DG-01 2 189862992 189862992 G T COL3A1 Missense_Mutation p.G642C 0.26 unknown(0) TCGA-55-A4DG-01 2 189940160 189940160 G T COL5A2 Missense_Mutation p.Q355K 0.23 benign(0.008) TCGA-55-A4DG-01 2 202549805 202549805 C A MPP4 Missense_Mutation p.G186W 0.45 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 2 204599693 204599693 G T CD28 3'UTR 0.28 TCGA-55-A4DG-01 2 206305289 206305289 A G PARD3B Silent p.P917P 0.11 TCGA-55-A4DG-01 2 207425878 207425878 G T ADAM23 Missense_Mutation p.S399I 0.11 deleterious(0) possibly_damaging(0.902) TCGA-55-A4DG-01 2 208440050 208440050 T A CREB1 Missense_Mutation p.V201E 0.19 deleterious(0) possibly_damaging(0.521) TCGA-55-A4DG-01 2 210557390 210557390 G C MAP2 Missense_Mutation p.E166Q 0.44 tolerated_low_confidence(0.2) benign(0.13) TCGA-55-A4DG-01 2 210560541 210560541 A T MAP2 Missense_Mutation p.D1216V 0.15 tolerated_low_confidence(0.08) possibly_damaging(0.833) TCGA-55-A4DG-01 2 210642138 210642138 T A UNC80 Missense_Mutation p.V152D 0.24 benign(0.086) TCGA-55-A4DG-01 2 211059990 211059990 G A ACADL Nonsense_Mutation p.Q353* 0.30 TCGA-55-A4DG-01 2 21233668 21233668 A T APOB Silent p.I2024I 0.12 TCGA-55-A4DG-01 2 214794716 214794716 C A SPAG16 Missense_Mutation p.T416N 0.29 tolerated(0.26) benign(0.053) TCGA-55-A4DG-01 2 220342800 220342800 G T SPEG Missense_Mutation p.R1667L 0.37 probably_damaging(0.991) TCGA-55-A4DG-01 2 227924193 227924193 C A COL4A4 Nonsense_Mutation p.G771* 0.16 TCGA-55-A4DG-01 2 241452254 241452254 C A ANKMY1 Missense_Mutation p.A615S 0.14 deleterious(0.01) probably_damaging(0.986) TCGA-55-A4DG-01 2 26700113 26700113 T A OTOF Missense_Mutation p.K817M 0.40 deleterious(0) possibly_damaging(0.718) TCGA-55-A4DG-01 2 27462235 27462235 A T CAD Missense_Mutation p.M1764L 0.11 tolerated(0.93) benign(0.001) TCGA-55-A4DG-01 2 27564992 27564992 C A GTF3C2 Missense_Mutation p.K226N 0.19 tolerated(0.12) benign(0.074) TCGA-55-A4DG-01 2 29255868 29255868 C T FAM179A Missense_Mutation p.S694F 0.18 tolerated(0.23) possibly_damaging(0.461) TCGA-55-A4DG-01 2 32093499 32093500 - T MEMO1 Frame_Shift_Ins p.S276Vfs*5 0.44 TCGA-55-A4DG-01 2 48915056 48915056 G T LHCGR Missense_Mutation p.T627N 0.33 deleterious(0) possibly_damaging(0.78) TCGA-55-A4DG-01 2 60689360 60689360 C A BCL11A Silent p.G229G 0.53 TCGA-55-A4DG-01 2 60689361 60689361 C A BCL11A Missense_Mutation p.G229V 0.52 tolerated(0.09) probably_damaging(0.925) TCGA-55-A4DG-01 2 68607961 68607961 G T PLEK Missense_Mutation p.C102F 0.14 deleterious(0.01) probably_damaging(0.91) TCGA-55-A4DG-01 2 69098327 69098327 A T BMP10 Missense_Mutation p.L55H 0.23 deleterious(0) probably_damaging(0.982) TCGA-55-A4DG-01 2 71576136 71576136 C T ZNF638 Nonsense_Mutation p.R18* 0.38 TCGA-55-A4DG-01 2 74730028 74730030 TCC - LBX2 5'UTR 0.16 TCGA-55-A4DG-01 2 77746342 77746342 G A LRRTM4 Missense_Mutation p.S218F 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-55-A4DG-01 2 79312331 79312331 T C REG1B 3'UTR 0.14 TCGA-55-A4DG-01 2 79364395 79364395 G T REG1P RNA 0.33 TCGA-55-A4DG-01 2 88876134 88876134 C A EIF2AK3 Missense_Mutation p.W658C 0.19 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 2 89309485 89309485 A G IGKV1-9 Silent p.S115S 0.15 TCGA-55-A4DG-01 2 95540574 95540574 C A TEKT4 Missense_Mutation p.A256D 0.14 deleterious(0) probably_damaging(0.993) TCGA-55-A4DG-01 2 96262052 96262052 G C TRIM43 Missense_Mutation p.E204Q 0.28 tolerated(0.06) benign(0.119) TCGA-55-A4DG-01 2 96781309 96781309 G T ADRA2B Missense_Mutation p.R194S 0.45 deleterious(0) possibly_damaging(0.903) TCGA-55-A4DG-01 2 99858900 99858900 G A LYG2 Missense_Mutation p.P189L 0.28 tolerated(0.59) benign(0.09) TCGA-55-A4DG-01 2 99980763 99980763 G T EIF5B Missense_Mutation p.R389S 0.32 benign(0.227) TCGA-55-A4DG-01 3 10130142 10130142 C T FANCD2 Missense_Mutation p.A1159V 0.35 deleterious(0) probably_damaging(0.953) TCGA-55-A4DG-01 3 102171826 102171826 C A ZPLD1 Missense_Mutation p.T73K 0.13 deleterious(0) possibly_damaging(0.82) TCGA-55-A4DG-01 3 10417305 10417305 C A ATP2B2 Missense_Mutation p.V409L 0.50 tolerated(0.08) probably_damaging(0.996) TCGA-55-A4DG-01 3 10417306 10417306 C A ATP2B2 Silent p.T408T 0.50 TCGA-55-A4DG-01 3 123418892 123418892 G A MYLK Silent p.T1141T 0.11 TCGA-55-A4DG-01 3 123666039 123666039 T A CCDC14 Missense_Mutation p.D278V 0.22 tolerated(0.07) benign(0.203) TCGA-55-A4DG-01 3 130293143 130293143 G A COL6A6 Silent p.L1107L 0.10 TCGA-55-A4DG-01 3 137483965 137483965 G T SOX14 Silent p.G113G 0.36 TCGA-55-A4DG-01 3 137483966 137483966 G T SOX14 Missense_Mutation p.A114S 0.36 tolerated(0.57) benign(0.055) TCGA-55-A4DG-01 3 138739142 138739142 C A PRR23B Missense_Mutation p.G121V 0.26 tolerated(0.11) possibly_damaging(0.824) TCGA-55-A4DG-01 3 13896175 13896175 G T WNT7A Missense_Mutation p.H142N 0.34 tolerated(1) benign(0.002) TCGA-55-A4DG-01 3 140397008 140397008 A T TRIM42 5'UTR 0.31 TCGA-55-A4DG-01 3 143704451 143704451 G T C3orf58 Missense_Mutation p.V242L 0.16 tolerated(0.36) benign(0.018) TCGA-55-A4DG-01 3 14489152 14489152 G T SLC6A6 Missense_Mutation p.A143S 0.26 tolerated(0.1) possibly_damaging(0.73) TCGA-55-A4DG-01 3 147131172 147131172 C T ZIC1 Missense_Mutation p.P393L 0.15 deleterious(0) probably_damaging(0.987) TCGA-55-A4DG-01 3 150391823 150391823 G T FAM194A Silent p.V421V 0.20 TCGA-55-A4DG-01 3 150460469 150460469 C A SIAH2 Missense_Mutation p.C145F 0.10 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 3 151012466 151012466 G T GPR87 Missense_Mutation p.H190N 0.35 tolerated(0.38) benign(0.001) TCGA-55-A4DG-01 3 155838414 155838414 G C KCNAB1 Missense_Mutation p.R5P 0.07 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-55-A4DG-01 3 157815623 157815623 C A SHOX2 3'UTR 0.41 TCGA-55-A4DG-01 3 16217079 16217079 G T GALNT15 Missense_Mutation p.G141W 0.22 deleterious(0.01) benign(0.019) TCGA-55-A4DG-01 3 164735569 164735569 C G SI Missense_Mutation p.A1205P 0.20 deleterious(0) possibly_damaging(0.812) TCGA-55-A4DG-01 3 164786890 164786890 G T SI Missense_Mutation p.Q117K 0.21 tolerated(0.37) benign(0) TCGA-55-A4DG-01 3 167039982 167039982 C A ZBBX Missense_Mutation p.W302C 0.12 deleterious(0) probably_damaging(0.973) TCGA-55-A4DG-01 3 167039983 167039983 C A ZBBX Missense_Mutation p.W302L 0.12 tolerated(0.2) benign(0.2) TCGA-55-A4DG-01 3 167414851 167414851 C A PDCD10 Missense_Mutation p.V72L 0.13 tolerated(1) benign(0.001) TCGA-55-A4DG-01 3 170588001 170588001 G C RPL22L1 5'UTR 0.14 TCGA-55-A4DG-01 3 172480284 172480284 G T ECT2 Silent p.L279L 0.38 TCGA-55-A4DG-01 3 173998845 173998845 C A NLGN1 Missense_Mutation p.H742N 0.29 tolerated_low_confidence(0.12) benign(0.107) TCGA-55-A4DG-01 3 179132828 179132828 G T GNB4 Missense_Mutation p.A92D 0.20 deleterious(0) benign(0.31) TCGA-55-A4DG-01 3 180377270 180377270 C A CCDC39 Missense_Mutation p.K236N 0.36 deleterious(0) benign(0.209) TCGA-55-A4DG-01 3 184076836 184076836 C A CLCN2 Missense_Mutation p.W49C 0.33 tolerated(0.05) benign(0.264) TCGA-55-A4DG-01 3 191179105 191179105 G T PYDC2 Missense_Mutation p.G52W 0.17 deleterious(0) probably_damaging(0.999) TCGA-55-A4DG-01 3 192078251 192078251 G T FGF12 Silent p.T92T 0.16 TCGA-55-A4DG-01 3 193153456 193153456 C A ATP13A4 Missense_Mutation p.G917V 0.09 deleterious(0.01) probably_damaging(1) TCGA-55-A4DG-01 3 194126775 194126775 G A ATP13A3 Missense_Mutation p.A1185V 0.18 tolerated(0.07) benign(0.038) TCGA-55-A4DG-01 3 195027255 195027255 C A ACAP2 Missense_Mutation p.K367N 0.14 tolerated(0.37) benign(0.003) TCGA-55-A4DG-01 3 196281205 196281205 C A WDR53 Missense_Mutation p.K318N 0.29 deleterious(0) possibly_damaging(0.58) TCGA-55-A4DG-01 3 20142850 20142850 G T KAT2B Missense_Mutation p.L247F 0.44 deleterious(0) probably_damaging(0.998) TCGA-55-A4DG-01 3 20142851 20142851 G T KAT2B Missense_Mutation p.A248S 0.43 tolerated(0.38) possibly_damaging(0.57) TCGA-55-A4DG-01 3 37033587 37033587 C A EPM2AIP1 Nonsense_Mutation p.E328* 0.33 TCGA-55-A4DG-01 3 37033950 37033950 C A EPM2AIP1 Missense_Mutation p.D207Y 0.32 deleterious(0) possibly_damaging(0.518) TCGA-55-A4DG-01 3 38739501 38739501 C T SCN10A Missense_Mutation p.S1737N 0.17 tolerated(0.06) benign(0.012) TCGA-55-A4DG-01 3 391063 391063 G T CHL1 Missense_Mutation p.W290C 0.31 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 3 39167772 39167772 C A TTC21A Silent p.I479I 0.13 TCGA-55-A4DG-01 3 407753 407753 G T CHL1 Missense_Mutation p.S569I 0.20 tolerated(0.09) benign(0.182) TCGA-55-A4DG-01 3 42781127 42781127 A G CCDC13 Missense_Mutation p.M388T 0.25 deleterious(0) benign(0.318) TCGA-55-A4DG-01 3 46062793 46062793 C A XCR1 Missense_Mutation p.R216L 0.31 deleterious(0) probably_damaging(0.93) TCGA-55-A4DG-01 3 48266801 48266801 C A CAMP Missense_Mutation p.L137M 0.34 tolerated(0.22) benign(0.221) TCGA-55-A4DG-01 3 49694656 49694656 G C BSN Missense_Mutation p.R2556P 0.11 unknown(0) TCGA-55-A4DG-01 3 49694657 49694657 G T BSN Silent p.R2556R 0.11 TCGA-55-A4DG-01 3 52469754 52469754 T C SEMA3G Silent p.S738S 0.36 TCGA-55-A4DG-01 3 53910669 53910669 T A ACTR8 Silent p.I252I 0.12 TCGA-55-A4DG-01 3 69168389 69168389 T C LMOD3 Missense_Mutation p.M373V 0.14 deleterious(0.05) benign(0.008) TCGA-55-A4DG-01 3 7188268 7188268 G T GRM7 Missense_Mutation p.G217C 0.29 deleterious(0) probably_damaging(0.964) TCGA-55-A4DG-01 3 73114099 73114099 A - PPP4R2 Frame_Shift_Del p.R247Dfs*27 0.33 TCGA-55-A4DG-01 3 73433089 73433089 G T PDZRN3 Missense_Mutation p.H876Q 0.18 deleterious(0.05) probably_damaging(1) TCGA-55-A4DG-01 3 86115873 86115873 C A CADM2 Silent p.A418A 0.19 TCGA-55-A4DG-01 3 93845162 93845162 G C NSUN3 Missense_Mutation p.G284A 0.17 tolerated(0.42) benign(0) TCGA-55-A4DG-01 4 113352699 113352699 C G ALPK1 Missense_Mutation p.Q666E 0.13 tolerated(0.75) benign(0.003) TCGA-55-A4DG-01 4 114275020 114275020 C T ANK2 Missense_Mutation p.P1749L 0.33 benign(0.025) TCGA-55-A4DG-01 4 114278096 114278096 C T ANK2 Silent p.G2774G 0.13 TCGA-55-A4DG-01 4 129767604 129767605 - T JADE1 Frame_Shift_Ins p.L72Ffs*32 0.22 TCGA-55-A4DG-01 4 134071765 134071765 G A PCDH10 Missense_Mutation p.R157H 0.36 tolerated(0.15) possibly_damaging(0.853) TCGA-55-A4DG-01 4 143094859 143094859 C A INPP4B Missense_Mutation p.D429Y 0.33 deleterious(0) probably_damaging(0.997) TCGA-55-A4DG-01 4 151505034 151505034 C A MAB21L2 Missense_Mutation p.H285N 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-55-A4DG-01 4 157693841 157693841 T C PDGFC Missense_Mutation p.R234G 0.14 deleterious(0.04) benign(0.285) TCGA-55-A4DG-01 4 177105923 177105923 G T SPATA4 3'UTR 0.21 TCGA-55-A4DG-01 4 177142661 177142661 C A ASB5 Missense_Mutation p.G159C 0.14 deleterious(0) probably_damaging(0.995) TCGA-55-A4DG-01 4 183676178 183676178 T A TENM3 Missense_Mutation p.I1553N 0.12 deleterious(0) benign(0.032) TCGA-55-A4DG-01 4 187454811 187454811 C T MTNR1A 3'UTR 0.21 TCGA-55-A4DG-01 4 37962539 37962539 G C PTTG2 Missense_Mutation p.G162R 0.18 tolerated(0.43) probably_damaging(0.991) TCGA-55-A4DG-01 4 39109240 39109240 G T KLHL5 Missense_Mutation p.W572L 0.12 tolerated(0.09) probably_damaging(0.999) TCGA-55-A4DG-01 4 40245054 40245054 G C RHOH Silent p.G16G 0.11 TCGA-55-A4DG-01 4 48486985 48486985 C A SLC10A4 Silent p.L209L 0.13 TCGA-55-A4DG-01 4 54257245 54257245 A G FIP1L1 Missense_Mutation p.Q192R 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-55-A4DG-01 4 57182072 57182072 A T KIAA1211 Missense_Mutation p.S802C 0.15 deleterious(0) possibly_damaging(0.843) TCGA-55-A4DG-01 4 57797989 57797989 G C REST Missense_Mutation p.A989P 0.31 tolerated(0.06) benign(0) TCGA-55-A4DG-01 4 62903462 62903462 A T LPHN3 Missense_Mutation p.Y1134F 0.39 deleterious(0.03) benign(0.023) TCGA-55-A4DG-01 4 62903464 62903464 G A LPHN3 Missense_Mutation p.G1135R 0.38 tolerated(0.59) probably_damaging(0.939) TCGA-55-A4DG-01 4 65170937 65170937 C A TECRL Missense_Mutation p.G226V 0.23 deleterious(0.04) probably_damaging(0.997) TCGA-55-A4DG-01 4 66356285 66356285 C T EPHA5 Silent p.V404V 0.32 TCGA-55-A4DG-01 4 70066379 70066379 G T UGT2B11 Missense_Mutation p.L457M 0.31 deleterious(0.01) probably_damaging(1) TCGA-55-A4DG-01 4 71227876 71227876 C A SMR3A Missense_Mutation p.A15E 0.26 deleterious_low_confidence(0.01) unknown(0) TCGA-55-A4DG-01 4 71347140 71347140 T G MUC7 Missense_Mutation p.S227A 0.26 tolerated(0.2) unknown(0) TCGA-55-A4DG-01 4 7668859 7668859 A C SORCS2 Silent p.S360S 0.31 TCGA-55-A4DG-01 4 81207592 81207592 C T FGF5 Silent p.A191A 0.21 TCGA-55-A4DG-01 4 83827746 83827746 A G THAP9 Silent p.E182E 0.28 TCGA-55-A4DG-01 4 8608523 8608523 C A CPZ Missense_Mutation p.N322K 0.29 deleterious(0) probably_damaging(0.999) TCGA-55-A4DG-01 5 137589034 137589034 T C GFRA3 Missense_Mutation p.H352R 0.54 deleterious(0.02) probably_damaging(0.997) TCGA-55-A4DG-01 5 137626352 137626352 C A CDC25C Silent p.G280G 0.33 TCGA-55-A4DG-01 5 13871694 13871694 C A DNAH5 Missense_Mutation p.G1193C 0.07 probably_damaging(0.965) TCGA-55-A4DG-01 5 13923526 13923526 C A DNAH5 Missense_Mutation p.V101L 0.37 benign(0.04) TCGA-55-A4DG-01 5 140176083 140176083 G C PCDHA2 Missense_Mutation p.A512P 0.40 deleterious_low_confidence(0.05) benign(0.397) TCGA-55-A4DG-01 5 140216098 140216098 G T PCDHA7 Silent p.L710L 0.40 TCGA-55-A4DG-01 5 140228240 140228240 C A PCDHA9 Missense_Mutation p.L54M 0.39 deleterious_low_confidence(0) probably_damaging(1) TCGA-55-A4DG-01 5 140553103 140553103 C T PCDHB7 Silent p.R229R 0.37 TCGA-55-A4DG-01 5 140596013 140596013 A T PCDHB13 Missense_Mutation p.N773I 0.33 deleterious_low_confidence(0.04) benign(0.026) TCGA-55-A4DG-01 5 140596014 140596014 C T PCDHB13 Silent p.N773N 0.33 TCGA-55-A4DG-01 5 140725540 140725540 A G PCDHGA3 Missense_Mutation p.Q647R 0.40 deleterious_low_confidence(0.02) benign(0.289) TCGA-55-A4DG-01 5 140737051 140737051 G A PCDHGA4 Missense_Mutation p.D762N 0.37 deleterious_low_confidence(0.01) benign(0.157) TCGA-55-A4DG-01 5 140754689 140754689 G T PCDHGA6 Missense_Mutation p.V347L 0.34 tolerated_low_confidence(0.11) benign(0.076) TCGA-55-A4DG-01 5 141019056 141019056 G A RELL2 Missense_Mutation p.D115N 0.26 tolerated(0.1) possibly_damaging(0.473) TCGA-55-A4DG-01 5 14481707 14481707 G T TRIO Missense_Mutation p.G2149W 0.08 benign(0.022) TCGA-55-A4DG-01 5 147023660 147023660 C A JAKMIP2 Missense_Mutation p.Q395H 0.29 deleterious(0) probably_damaging(0.984) TCGA-55-A4DG-01 5 149314247 149314247 G C PDE6A Missense_Mutation p.T170R 0.27 deleterious(0) probably_damaging(0.998) TCGA-55-A4DG-01 5 150722455 150722456 - A SLC36A2 Frame_Shift_Ins p.W145Lfs*27 0.37 TCGA-55-A4DG-01 5 156635952 156635952 A C ITK Missense_Mutation p.E64A 0.42 deleterious(0.03) possibly_damaging(0.777) TCGA-55-A4DG-01 5 156671316 156671316 T A ITK Missense_Mutation p.L426Q 0.49 deleterious(0) benign(0.246) TCGA-55-A4DG-01 5 156770407 156770407 G T FNDC9 Nonsense_Mutation p.Y46* 0.34 TCGA-55-A4DG-01 5 156890226 156890226 T C NIPAL4 Silent p.Y116Y 0.15 TCGA-55-A4DG-01 5 168114058 168114058 G T SLIT3 Silent p.A1080A 0.33 TCGA-55-A4DG-01 5 169446026 169446026 C A DOCK2 Missense_Mutation p.P1099T 0.21 deleterious(0) probably_damaging(0.984) TCGA-55-A4DG-01 5 175111371 175111371 G T HRH2 Intron 0.13 TCGA-55-A4DG-01 5 175111372 175111372 G T HRH2 Intron 0.14 TCGA-55-A4DG-01 5 175530295 175530295 G T FAM153B Missense_Mutation p.V167L 0.06 tolerated_low_confidence(0.08) benign(0.068) TCGA-55-A4DG-01 5 177546899 177546899 G T N4BP3 Silent p.R105R 0.32 TCGA-55-A4DG-01 5 178700001 178700001 G T ADAMTS2 Missense_Mutation p.A200E 0.22 tolerated(1) benign(0.007) TCGA-55-A4DG-01 5 179192659 179192659 G T MAML1 Silent p.L216L 0.64 TCGA-55-A4DG-01 5 19747068 19747068 G C CDH18 Missense_Mutation p.P169R 0.11 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 5 21459785 21459785 A G GUSBP1 Splice_Site 0.35 TCGA-55-A4DG-01 5 24498572 24498572 C A CDH10 Missense_Mutation p.D484Y 0.20 deleterious(0.01) benign(0.203) TCGA-55-A4DG-01 5 26890001 26890001 G C CDH9 Missense_Mutation p.P486A 0.16 deleterious(0) probably_damaging(0.994) TCGA-55-A4DG-01 5 26906079 26906079 C A CDH9 Missense_Mutation p.R267L 0.05 deleterious(0) possibly_damaging(0.549) TCGA-55-A4DG-01 5 31302372 31302372 G C CDH6 Missense_Mutation p.Q322H 0.09 deleterious(0.05) benign(0.382) TCGA-55-A4DG-01 5 31464400 31464400 C A DROSHA Silent p.T839T 0.07 TCGA-55-A4DG-01 5 32712336 32712336 C A NPR3 Missense_Mutation p.L152M 0.10 deleterious(0.01) possibly_damaging(0.884) TCGA-55-A4DG-01 5 35909981 35909981 T A CAPSL Missense_Mutation p.D171V 0.10 tolerated(0.12) benign(0.014) TCGA-55-A4DG-01 5 36269490 36269490 A T RANBP3L Splice_Site p.X90_splice 0.09 TCGA-55-A4DG-01 5 37299643 37299643 T C NUP155 Missense_Mutation p.K1197E 0.15 tolerated(0.32) benign(0.103) TCGA-55-A4DG-01 5 38370498 38370498 G A EGFLAM Missense_Mutation p.V216M 0.08 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-55-A4DG-01 5 43175237 43175237 A G ZNF131 3'UTR 0.16 TCGA-55-A4DG-01 5 45262750 45262750 G T HCN1 Missense_Mutation p.S649Y 0.51 tolerated(0.62) benign(0.004) TCGA-55-A4DG-01 5 5461235 5461235 A T KIAA0947 Missense_Mutation p.K596N 0.19 tolerated(0.12) benign(0.108) TCGA-55-A4DG-01 5 5462151 5462151 G T KIAA0947 Missense_Mutation p.A902S 0.09 tolerated(0.47) benign(0.046) TCGA-55-A4DG-01 5 5464644 5464644 C G KIAA0947 Missense_Mutation p.P1733A 0.07 tolerated(0.29) benign(0.027) TCGA-55-A4DG-01 5 60999814 60999814 G A C5orf64 Missense_Mutation p.C116Y 0.19 deleterious_low_confidence(0.01) benign(0.348) TCGA-55-A4DG-01 5 63256541 63256541 C G HTR1A Missense_Mutation p.A336P 0.41 tolerated(0.14) probably_damaging(0.998) TCGA-55-A4DG-01 5 63256708 63256708 G T HTR1A Missense_Mutation p.A280E 0.11 tolerated(0.18) probably_damaging(0.986) TCGA-55-A4DG-01 5 63257256 63257256 C A HTR1A Missense_Mutation p.Q97H 0.10 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 5 63803605 63803605 C T RGS7BP Missense_Mutation p.S78L 0.09 deleterious(0) possibly_damaging(0.519) TCGA-55-A4DG-01 5 63803606 63803606 G T RGS7BP Silent p.S78S 0.09 TCGA-55-A4DG-01 5 70845414 70845414 G C BDP1 Missense_Mutation p.E2326Q 0.30 deleterious(0.05) possibly_damaging(0.855) TCGA-55-A4DG-01 5 72469086 72469086 G T TMEM174 Missense_Mutation p.G6C 0.34 deleterious(0.02) possibly_damaging(0.667) TCGA-55-A4DG-01 5 7713002 7713002 C T ADCY2 Missense_Mutation p.R538C 0.17 tolerated(0.07) benign(0.035) TCGA-55-A4DG-01 5 90012313 90012313 G T GPR98 Missense_Mutation p.G3072C 0.25 probably_damaging(0.998) TCGA-55-A4DG-01 5 9054242 9054242 C A SEMA5A Silent p.G882G 0.06 TCGA-55-A4DG-01 5 9122822 9122822 T A SEMA5A Missense_Mutation p.Q576L 0.08 tolerated(0.08) benign(0.158) TCGA-55-A4DG-01 5 9629852 9629852 C T TAS2R1 Nonsense_Mutation p.W98* 0.14 TCGA-55-A4DG-01 6 10586679 10586679 G T GCNT2 Intron 0.53 TCGA-55-A4DG-01 6 108984958 108984958 G T FOXO3 Missense_Mutation p.D308Y 0.47 deleterious(0) probably_damaging(0.961) TCGA-55-A4DG-01 6 10959036 10959036 C A SYCP2L Missense_Mutation p.P728Q 0.62 tolerated(0.28) benign(0.187) TCGA-55-A4DG-01 6 109787547 109787547 C A ZBTB24 Missense_Mutation p.R534M 0.53 deleterious(0) probably_damaging(0.984) TCGA-55-A4DG-01 6 110777745 110777745 C G SLC22A16 Missense_Mutation p.D177H 0.34 deleterious(0) probably_damaging(0.999) TCGA-55-A4DG-01 6 12122061 12122061 G A HIVEP1 Missense_Mutation p.R678H 0.16 deleterious(0) probably_damaging(0.999) TCGA-55-A4DG-01 6 125233551 125233551 C G RP11-510H23.1 RNA 0.44 TCGA-55-A4DG-01 6 133138411 133138411 A G RPS12 Intron 0.43 TCGA-55-A4DG-01 6 136599312 136599312 G T BCLAF1 Missense_Mutation p.P236H 0.07 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-55-A4DG-01 6 148867155 148867155 G T SASH1 Missense_Mutation p.G1118V 0.36 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 6 152332851 152332851 T A ESR1 Missense_Mutation p.I386N 0.55 deleterious(0) probably_damaging(0.999) TCGA-55-A4DG-01 6 169637744 169637744 T A THBS2 Missense_Mutation p.S426C 0.41 tolerated(0.18) probably_damaging(0.976) TCGA-55-A4DG-01 6 25517610 25517610 A C LRRC16A Missense_Mutation p.Q614P 0.54 tolerated(0.1) possibly_damaging(0.883) TCGA-55-A4DG-01 6 26027237 26027237 C G HIST1H4B Missense_Mutation p.V82L 0.39 deleterious(0.01) possibly_damaging(0.705) TCGA-55-A4DG-01 6 29524021 29524021 A C UBD Missense_Mutation p.V45G 0.39 tolerated(0.13) probably_damaging(0.95) TCGA-55-A4DG-01 6 31116424 31116424 C A CCHCR1 Nonsense_Mutation p.E482* 0.55 TCGA-55-A4DG-01 6 31498560 31498560 G C DDX39B Silent p.S422S 0.42 TCGA-55-A4DG-01 6 31743763 31743763 C A VWA7 Missense_Mutation p.G164V 0.57 deleterious(0) probably_damaging(0.957) TCGA-55-A4DG-01 6 31901427 31901427 G T CFB Silent p.V99V 0.61 TCGA-55-A4DG-01 6 33177712 33177712 G T RING1 Missense_Mutation p.C87F 0.50 deleterious(0) benign(0.427) TCGA-55-A4DG-01 6 38885814 38885814 T C DNAH8 Silent p.F3257F 0.10 TCGA-55-A4DG-01 6 395894 395894 C A IRF4 Missense_Mutation p.P151T 0.44 deleterious(0.02) benign(0.017) TCGA-55-A4DG-01 6 46991782 46991782 G A GPR110 Missense_Mutation p.T150I 0.73 tolerated(0.26) possibly_damaging(0.872) TCGA-55-A4DG-01 6 47754333 47754333 G T OPN5 Missense_Mutation p.M71I 0.49 deleterious(0.02) probably_damaging(0.929) TCGA-55-A4DG-01 6 49754824 49754824 T A PGK2 Missense_Mutation p.N26I 0.60 deleterious(0) probably_damaging(0.998) TCGA-55-A4DG-01 6 54806714 54806714 A T FAM83B Missense_Mutation p.N982I 0.39 deleterious(0) possibly_damaging(0.826) TCGA-55-A4DG-01 6 70859932 70859932 G T COL19A1 Missense_Mutation p.D678Y 0.55 deleterious(0) probably_damaging(0.995) TCGA-55-A4DG-01 6 71665602 71665602 C A B3GAT2 Missense_Mutation p.Q177H 0.59 tolerated(0.15) benign(0.003) TCGA-55-A4DG-01 6 85446332 85446332 C A TBX18 3'UTR 0.31 TCGA-55-A4DG-01 6 97578796 97578796 G C KLHL32 Missense_Mutation p.W526S 0.35 deleterious(0) probably_damaging(0.999) TCGA-55-A4DG-01 7 100198540 100198540 T C FBXO24 3'UTR 0.14 TCGA-55-A4DG-01 7 100675017 100675017 G T MUC17 Missense_Mutation p.S107I 0.33 benign(0.441) TCGA-55-A4DG-01 7 100679465 100679465 G A MUC17 Missense_Mutation p.A1590T 0.30 unknown(0) TCGA-55-A4DG-01 7 100686490 100686490 A T MUC17 Missense_Mutation p.E3931D 0.36 benign(0.001) TCGA-55-A4DG-01 7 102574465 102574465 G T LRRC17 Silent p.A35A 0.60 TCGA-55-A4DG-01 7 103008398 103008398 G T PSMC2 Missense_Mutation p.R400L 0.49 deleterious(0) probably_damaging(0.998) TCGA-55-A4DG-01 7 11076118 11076118 G - PHF14 Frame_Shift_Del p.V560Ffs*61 0.23 TCGA-55-A4DG-01 7 11415357 11415357 G T THSD7A 3'UTR 0.42 TCGA-55-A4DG-01 7 11676041 11676041 G C THSD7A Missense_Mutation p.C246W 0.10 deleterious(0) probably_damaging(0.999) TCGA-55-A4DG-01 7 131815219 131815219 G T PLXNA4 3'UTR 0.49 TCGA-55-A4DG-01 7 132192496 132192496 C A PLXNA4 Silent p.G319G 0.46 TCGA-55-A4DG-01 7 142176337 142176337 G T TRBV7-4 Missense_Mutation p.S113R 0.12 deleterious(0) probably_damaging(0.995) TCGA-55-A4DG-01 7 142636751 142636751 A G C7orf34 Silent p.A36A 0.35 TCGA-55-A4DG-01 7 144364854 144364854 G A TPK1 Intron 0.44 TCGA-55-A4DG-01 7 150553883 150553883 C G AOC1 Missense_Mutation p.P109A 0.13 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 7 151042434 151042434 G T NUB1 Missense_Mutation p.G24V 0.50 tolerated_low_confidence(0.31) benign(0.025) TCGA-55-A4DG-01 7 20180532 20180532 C A MACC1 3'UTR 0.08 TCGA-55-A4DG-01 7 2740376 2740376 C A AMZ1 Nonsense_Mutation p.Y97* 0.45 TCGA-55-A4DG-01 7 31126585 31126585 G T ADCYAP1R1 Missense_Mutation p.W284C 0.56 deleterious(0) probably_damaging(0.98) TCGA-55-A4DG-01 7 36194243 36194243 G T EEPD1 Missense_Mutation p.G104C 0.11 tolerated(0.19) possibly_damaging(0.682) TCGA-55-A4DG-01 7 38768292 38768292 C T VPS41 Missense_Mutation p.E787K 0.57 tolerated(0.12) benign(0.002) TCGA-55-A4DG-01 7 42088266 42088266 T A GLI3 Missense_Mutation p.Y168F 0.48 tolerated(0.51) probably_damaging(0.993) TCGA-55-A4DG-01 7 43921536 43921536 C A URGCP Nonsense_Mutation p.E45* 0.62 TCGA-55-A4DG-01 7 44119270 44119270 C A POLM Missense_Mutation p.R181I 0.44 deleterious(0) probably_damaging(0.97) TCGA-55-A4DG-01 7 47854978 47854978 C T PKD1L1 Missense_Mutation p.G2348D 0.52 deleterious(0) benign(0.282) TCGA-55-A4DG-01 7 48147962 48147962 C T UPP1 3'UTR 0.13 TCGA-55-A4DG-01 7 56148957 56148957 G A PHKG1 Silent p.I350I 0.35 TCGA-55-A4DG-01 7 57188855 57188855 C G ZNF479 Silent p.T89T 0.19 TCGA-55-A4DG-01 7 57522779 57522779 G T ZNF716 Missense_Mutation p.G56V 0.18 deleterious(0.01) probably_damaging(0.916) TCGA-55-A4DG-01 7 75630299 75630299 G C STYXL1 Missense_Mutation p.S240C 0.15 deleterious(0) probably_damaging(0.967) TCGA-55-A4DG-01 7 81746426 81746426 T C CACNA2D1 Missense_Mutation p.N154D 0.59 tolerated(0.25) benign(0.001) TCGA-55-A4DG-01 7 84727238 84727238 T C SEMA3D Silent p.S65S 0.41 TCGA-55-A4DG-01 7 84727258 84727258 T A SEMA3D Missense_Mutation p.I59F 0.41 tolerated(0.7) benign(0.029) TCGA-55-A4DG-01 7 8790693 8790693 G T NXPH1 Missense_Mutation p.S37I 0.39 tolerated(0.08) benign(0.023) TCGA-55-A4DG-01 7 88963552 88963552 G A ZNF804B Missense_Mutation p.R419K 0.48 tolerated(0.64) benign(0.012) TCGA-55-A4DG-01 7 92763228 92763228 T G SAMD9L Missense_Mutation p.H686P 0.42 tolerated(0.06) possibly_damaging(0.622) TCGA-55-A4DG-01 7 95761052 95761052 C G SLC25A13 Intron 0.22 TCGA-55-A4DG-01 8 100729491 100729493 TGT - VPS13B In_Frame_Del p.C2209del 0.14 TCGA-55-A4DG-01 8 105436552 105436552 A G DPYS Silent p.F386F 0.14 TCGA-55-A4DG-01 8 105503667 105503667 C A LRP12 Missense_Mutation p.R605L 0.11 deleterious(0) probably_damaging(0.998) TCGA-55-A4DG-01 8 110592165 110592165 C A SYBU Silent p.P199P 0.07 TCGA-55-A4DG-01 8 113668530 113668530 C T CSMD3 Missense_Mutation p.D953N 0.49 deleterious(0.05) probably_damaging(1) TCGA-55-A4DG-01 8 120435355 120435355 A G NOV Missense_Mutation p.T353A 0.09 tolerated(0.35) benign(0.02) TCGA-55-A4DG-01 8 121228646 121228646 C T COL14A1 Nonsense_Mutation p.R552* 0.47 TCGA-55-A4DG-01 8 132051815 132051815 G T ADCY8 Silent p.T255T 0.07 TCGA-55-A4DG-01 8 133899143 133899143 T C TG Missense_Mutation p.F509S 0.22 deleterious(0.04) possibly_damaging(0.719) TCGA-55-A4DG-01 8 134239837 134239837 T C WISP1 Missense_Mutation p.F330L 0.12 deleterious(0.02) possibly_damaging(0.597) TCGA-55-A4DG-01 8 145695012 145695012 A G KIFC2 Silent p.P454P 0.65 TCGA-55-A4DG-01 8 38275833 38275833 C A FGFR1 Missense_Mutation p.R479L 0.17 tolerated(0.07) probably_damaging(0.982) TCGA-55-A4DG-01 8 42046466 42046466 G C PLAT Nonsense_Mutation p.S80* 0.27 TCGA-55-A4DG-01 8 55537655 55537655 G A RP1 Missense_Mutation p.A405T 0.47 tolerated(0.53) benign(0.023) TCGA-55-A4DG-01 8 57025932 57025932 G T MOS Missense_Mutation p.P204T 0.10 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 8 66516619 66516619 A G ARMC1 3'UTR 0.13 TCGA-55-A4DG-01 8 72977738 72977738 G A TRPA1 Missense_Mutation p.T167I 0.09 deleterious(0) probably_damaging(0.991) TCGA-55-A4DG-01 8 77616483 77616483 G C ZFHX4 Missense_Mutation p.D54H 0.54 benign(0.06) TCGA-55-A4DG-01 8 77766177 77766177 T C ZFHX4 Silent p.D2340D 0.46 TCGA-55-A4DG-01 8 87235241 87235241 G A SLC7A13 Silent p.S259S 0.09 TCGA-55-A4DG-01 8 89086878 89086878 C A MMP16 Missense_Mutation p.D393Y 0.39 deleterious(0) probably_damaging(0.986) TCGA-55-A4DG-01 8 98943627 98943627 G T MATN2 Missense_Mutation p.G197C 0.14 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 8 99440603 99440603 G C KCNS2 Missense_Mutation p.Q132H 0.08 tolerated(0.25) benign(0.364) TCGA-55-A4DG-01 9 100308537 100308537 G T TMOD1 Missense_Mutation p.R64I 0.12 deleterious(0) possibly_damaging(0.884) TCGA-55-A4DG-01 9 104192196 104192196 G T ALDOB Missense_Mutation p.N55K 0.25 deleterious(0.03) probably_damaging(0.95) TCGA-55-A4DG-01 9 107367888 107367888 G A OR13C2 Silent p.T7T 0.13 TCGA-55-A4DG-01 9 114090329 114090329 G T OR2K2 Missense_Mutation p.P129T 0.18 deleterious(0) possibly_damaging(0.78) TCGA-55-A4DG-01 9 118949475 118949475 G A PAPPA Nonsense_Mutation p.W153* 0.18 TCGA-55-A4DG-01 9 118949934 118949934 C A PAPPA Missense_Mutation p.P306H 0.22 deleterious(0) probably_damaging(0.977) TCGA-55-A4DG-01 9 125681088 125681088 G A ZBTB26 Silent p.L376L 0.13 TCGA-55-A4DG-01 9 126134612 126134612 G T CRB2 Missense_Mutation p.G865C 0.23 deleterious(0) probably_damaging(0.965) TCGA-55-A4DG-01 9 133804959 133804959 T C FIBCD1 Missense_Mutation p.I183V 0.38 tolerated(0.11) benign(0.007) TCGA-55-A4DG-01 9 135073902 135073902 C A NTNG2 Silent p.R255R 0.08 TCGA-55-A4DG-01 9 135458480 135458480 G A BARHL1 Missense_Mutation p.R99K 0.13 tolerated(0.86) benign(0.015) TCGA-55-A4DG-01 9 136523515 136523515 G A DBH Silent p.Q600Q 0.11 TCGA-55-A4DG-01 9 136654437 136654437 G C VAV2 Missense_Mutation p.P406R 0.12 deleterious(0.01) probably_damaging(1) TCGA-55-A4DG-01 9 137778350 137778350 G C FCN2 Missense_Mutation p.V212L 0.09 tolerated(0.32) benign(0.003) TCGA-55-A4DG-01 9 139291435 139291435 C A SNAPC4 Silent p.P57P 0.16 TCGA-55-A4DG-01 9 140137475 140137475 G A TUBB4B Missense_Mutation p.G269S 0.20 tolerated_low_confidence(0.09) possibly_damaging(0.538) TCGA-55-A4DG-01 9 172158 172158 C G CBWD1 Missense_Mutation p.R118T 0.15 tolerated(0.13) benign(0.014) TCGA-55-A4DG-01 9 18661978 18661978 G T ADAMTSL1 Missense_Mutation p.R331L 0.18 deleterious(0.01) probably_damaging(1) TCGA-55-A4DG-01 9 21166026 21166026 C A IFNA21 3'UTR 0.26 TCGA-55-A4DG-01 9 21216800 21216800 C A IFNA16 Missense_Mutation p.A169S 0.08 deleterious(0.01) possibly_damaging(0.685) TCGA-55-A4DG-01 9 21228138 21228138 A G IFNA17 Missense_Mutation p.L12P 0.27 deleterious(0.01) benign(0.002) TCGA-55-A4DG-01 9 21970914 21970914 C T CDKN2A Silent p.A148A 0.13 TCGA-55-A4DG-01 9 27950638 27950638 G T LINGO2 Missense_Mutation p.P11Q 0.12 tolerated(0.16) benign(0.347) TCGA-55-A4DG-01 9 35547720 35547720 C A RUSC2 Missense_Mutation p.T401N 0.14 deleterious(0) probably_damaging(0.996) TCGA-55-A4DG-01 9 43626840 43626840 G A SPATA31A6 Missense_Mutation p.S616F 0.44 tolerated(0.13) benign(0.273) TCGA-55-A4DG-01 9 79322953 79322953 G C PRUNE2 Missense_Mutation p.R1413G 0.44 tolerated(0.33) benign(0) TCGA-55-A4DG-01 9 86498854 86498854 G C KIF27 Silent p.V773V 0.12 TCGA-55-A4DG-01 9 88692462 88692462 T A GOLM1 Silent p.A58A 0.15 TCGA-55-A4DG-01 9 90501456 90501456 G T SPATA31E1 Missense_Mutation p.G685V 0.14 deleterious(0) probably_damaging(0.983) TCGA-55-A4DG-01 9 93375770 93375770 T A DIRAS2 Missense_Mutation p.I114F 0.15 tolerated(0.28) possibly_damaging(0.47) TCGA-55-A4DG-01 9 96212848 96212848 C A FAM120AOS Missense_Mutation p.Q199H 0.35 deleterious_low_confidence(0) benign(0.387) TCGA-55-A4DG-01 X 10182002 10182002 G A CLCN4 Missense_Mutation p.E620K 0.39 tolerated(0.17) benign(0.125) TCGA-55-A4DG-01 X 106310785 106310785 C T RBM41 Missense_Mutation p.G405D 0.20 tolerated_low_confidence(1) benign(0) TCGA-55-A4DG-01 X 106359173 106359173 G A RBM41 Silent p.D79D 0.34 TCGA-55-A4DG-01 X 111698580 111698580 G C ZCCHC16 Silent p.L208L 0.40 TCGA-55-A4DG-01 X 119512554 119512554 C A ATP1B4 Silent p.R280R 0.62 TCGA-55-A4DG-01 X 124097622 124097622 G T TENM1 5'UTR 0.59 TCGA-55-A4DG-01 X 125298759 125298759 C G DCAF12L2 Silent p.L383L 0.54 TCGA-55-A4DG-01 X 125685509 125685509 G T DCAF12L1 Missense_Mutation p.H361Q 0.57 deleterious(0.02) possibly_damaging(0.548) TCGA-55-A4DG-01 X 12736161 12736161 C A FRMPD4 Missense_Mutation p.D1072E 0.32 tolerated_low_confidence(0.43) benign(0.027) TCGA-55-A4DG-01 X 12736162 12736162 A C FRMPD4 Missense_Mutation p.S1073R 0.29 deleterious_low_confidence(0.01) benign(0.128) TCGA-55-A4DG-01 X 134681065 134681065 G C DDX26B Missense_Mutation p.R206P 0.23 deleterious(0) probably_damaging(0.995) TCGA-55-A4DG-01 X 135405348 135405348 G C GPR112 Missense_Mutation p.G161A 0.19 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 X 135405349 135405349 G A GPR112 Silent p.G161G 0.19 TCGA-55-A4DG-01 X 135618285 135618285 G T VGLL1 Missense_Mutation p.D36Y 0.51 deleterious(0) probably_damaging(1) TCGA-55-A4DG-01 X 135638742 135638742 G C VGLL1 3'UTR 0.44 TCGA-55-A4DG-01 X 138832249 138832249 C A ATP11C Silent p.L924L 0.57 TCGA-55-A4DG-01 X 1413267 1413267 G C CSF2RA Silent p.T231T 0.06 TCGA-55-A4DG-01 X 142795580 142795580 C A SPANXN2 Missense_Mutation p.R33M 0.70 tolerated_low_confidence(0.07) probably_damaging(0.953) TCGA-55-A4DG-01 X 144905083 144905083 C G SLITRK2 Silent p.L380L 0.57 TCGA-55-A4DG-01 X 20081688 20081688 C A MAP7D2 Silent p.R72R 0.22 TCGA-55-A4DG-01 X 35993824 35993824 G C CXorf22 Missense_Mutation p.G836A 0.61 deleterious(0.04) probably_damaging(1) TCGA-55-A4DG-01 X 36163091 36163091 C A CHDC2 3'UTR 0.60 TCGA-55-A4DG-01 X 41204747 41204750 TGGG - DDX3X Frame_Shift_Del p.V422Kfs*13 0.52 TCGA-55-A4DG-01 X 43626802 43626802 G A MAOB Silent p.L492L 0.36 TCGA-55-A4DG-01 X 52682023 52682023 A T SSX7 Missense_Mutation p.D27E 0.41 deleterious(0) possibly_damaging(0.908) TCGA-55-A4DG-01 X 591664 591664 C A SHOX Missense_Mutation p.S11Y 0.34 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-55-A4DG-01 X 591756 591756 G T SHOX Nonsense_Mutation p.G42* 0.12 TCGA-55-A4DG-01 X 69282872 69282872 T A OTUD6A Silent p.S166S 0.27 TCGA-55-A4DG-01 X 79277933 79277933 C A TBX22 Missense_Mutation p.S55R 0.44 tolerated(0.36) benign(0.012) TCGA-55-A4DG-01 X 86772846 86772846 G T KLHL4 5'UTR 0.48 TCGA-55-A4DG-01 Y 22921814 22921814 C A RPS4Y2 Missense_Mutation p.L48I 0.40 tolerated(0.15) benign(0.252) TCGA-55-A57B-01 10 103900890 103900890 G T PPRC1 Missense_Mutation p.M875I 0.30 deleterious_low_confidence(0.01) benign(0.001) TCGA-55-A57B-01 10 7849660 7849660 G C ATP5C1 3'UTR 0.16 TCGA-55-A57B-01 10 99696018 99696018 C A CRTAC1 Silent p.R110R 0.17 TCGA-55-A57B-01 12 122966153 122966153 G A ZCCHC8 Missense_Mutation p.R312W 0.16 deleterious(0) probably_damaging(0.915) TCGA-55-A57B-01 12 5154058 5154058 G A KCNA5 Missense_Mutation p.A249T 0.18 deleterious(0) probably_damaging(0.998) TCGA-55-A57B-01 13 48955403 48955403 G T RB1 Missense_Mutation p.D507Y 0.07 deleterious(0.01) possibly_damaging(0.643) TCGA-55-A57B-01 15 99512797 99512797 G A PGPEP1L Silent p.A76A 0.09 TCGA-55-A57B-01 16 67316004 67316004 G A PLEKHG4 Silent p.E366E 0.14 TCGA-55-A57B-01 16 69154957 69154957 T A CHTF8 Missense_Mutation p.E47V 0.20 tolerated(0.11) probably_damaging(0.989) TCGA-55-A57B-01 17 19617209 19617209 G A SLC47A2 Silent p.L124L 0.07 TCGA-55-A57B-01 17 36091586 36091586 C A HNF1B Nonsense_Mutation p.G349* 0.23 TCGA-55-A57B-01 17 40004245 40004245 A - KLHL10 Frame_Shift_Del p.N505Tfs*56 0.23 TCGA-55-A57B-01 17 7577141 7577141 C A TP53 Missense_Mutation p.G266V 0.31 deleterious(0) probably_damaging(0.999) TCGA-55-A57B-01 19 44223001 44223001 G A IRGC Silent p.S97S 0.16 TCGA-55-A57B-01 19 56372897 56372897 C T NLRP4 Missense_Mutation p.R668C 0.15 tolerated(0.1) possibly_damaging(0.453) TCGA-55-A57B-01 19 58231893 58231893 T C ZNF671 Missense_Mutation p.T521A 0.14 tolerated(0.18) benign(0.008) TCGA-55-A57B-01 1 10720399 10720399 C T CASZ1 Missense_Mutation p.A234T 0.22 tolerated_low_confidence(0.08) benign(0.391) TCGA-55-A57B-01 1 157494328 157494328 G C FCRL5 Missense_Mutation p.I660M 0.24 deleterious(0) probably_damaging(0.944) TCGA-55-A57B-01 1 177242640 177242640 C G BRINP2 Missense_Mutation p.T229S 0.10 tolerated(0.06) probably_damaging(0.957) TCGA-55-A57B-01 1 179564939 179564939 G A TDRD5 Missense_Mutation p.E273K 0.22 tolerated(0.12) benign(0.098) TCGA-55-A57B-01 1 248570265 248570265 C T OR2T1 Missense_Mutation p.L324F 0.20 tolerated(0.27) benign(0.002) TCGA-55-A57B-01 1 33363810 33363810 G C TMEM54 Missense_Mutation p.L43V 0.09 deleterious(0) probably_damaging(0.999) TCGA-55-A57B-01 21 45947241 45947241 G A TSPEAR Silent p.F361F 0.06 TCGA-55-A57B-01 22 21363391 21363391 C A AC002472.1 5'Flank 0.10 TCGA-55-A57B-01 22 26860454 26860454 T A HPS4 Missense_Mutation p.E381V 0.11 tolerated(0.17) benign(0.019) TCGA-55-A57B-01 22 29445768 29445768 C G ZNRF3 Missense_Mutation p.H533Q 0.21 deleterious(0) probably_damaging(0.993) TCGA-55-A57B-01 22 32239186 32239186 G A DEPDC5 Missense_Mutation p.R865Q 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-55-A57B-01 22 45312299 45312299 G A PHF21B Missense_Mutation p.P142L 0.22 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-55-A57B-01 2 158178229 158178229 G A ERMN Nonsense_Mutation p.Q150* 0.25 TCGA-55-A57B-01 2 173423519 173423519 A G PDK1 Missense_Mutation p.I94V 0.13 tolerated(0.18) possibly_damaging(0.885) TCGA-55-A57B-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.13 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-55-A57B-01 2 39487767 39487783 GAGGTAGAATTTGGATT - MAP4K3 Frame_Shift_Del p.N758Ffs*44 0.15 TCGA-55-A57B-01 3 10491247 10491247 C A ATP2B2 5'UTR 0.06 TCGA-55-A57B-01 3 113667649 113667649 C T ZDHHC23 5'UTR 0.23 TCGA-55-A57B-01 3 138038340 138038340 C A NME9 Missense_Mutation p.D37Y 0.15 deleterious(0) probably_damaging(0.992) TCGA-55-A57B-01 3 16268972 16268972 C T GALNT15 Missense_Mutation p.R629C 0.06 deleterious(0.02) possibly_damaging(0.708) TCGA-55-A57B-01 3 49691139 49691139 A G BSN Missense_Mutation p.T1384A 0.17 unknown(0) TCGA-55-A57B-01 5 172660266 172660266 G A NKX2-5 Intron 0.21 TCGA-55-A57B-01 5 178139467 178139467 C T ZNF354A Missense_Mutation p.C471Y 0.08 deleterious(0) probably_damaging(1) TCGA-55-A57B-01 5 178413569 178413569 C T GRM6 Missense_Mutation p.M562I 0.29 tolerated(0.3) benign(0.158) TCGA-55-A57B-01 6 159463150 159463150 A G TAGAP Missense_Mutation p.I92T 0.26 tolerated(0.14) benign(0.015) TCGA-55-A57B-01 6 38160321 38160321 C T BTBD9 Missense_Mutation p.V539I 0.19 tolerated(0.05) benign(0.283) TCGA-55-A57B-01 7 142131654 142131654 C A TRBV5-6 Missense_Mutation p.R34I 0.14 deleterious(0.03) benign(0.119) TCGA-55-A57B-01 7 149492499 149492499 C T SSPO RNA 0.17 TCGA-55-A57B-01 7 30693204 30693204 C T CRHR2 Missense_Mutation p.V397M 0.16 deleterious(0.02) benign(0.058) TCGA-55-A57B-01 7 34724197 34724197 G A NPSR1 Missense_Mutation p.V61I 0.17 tolerated(0.47) benign(0.014) TCGA-55-A57B-01 7 55242468 55242482 ATTAAGAGAAGCAAC - EGFR In_Frame_Del p.L747_T751del 0.16 TCGA-55-A57B-01 7 83614763 83614763 A G SEMA3A Missense_Mutation p.S495P 0.12 deleterious(0) probably_damaging(0.986) TCGA-55-A57B-01 7 91736684 91736684 C T AKAP9 Missense_Mutation p.R3832C 0.16 probably_damaging(0.96) TCGA-55-A57B-01 7 99621311 99621311 G A ZKSCAN1 Missense_Mutation p.R61H 0.22 tolerated(0.24) benign(0.001) TCGA-55-A57B-01 8 109260961 109260961 C G EIF3E 5'UTR 0.14 TCGA-55-A57B-01 8 144511699 144511699 A T MAFA Missense_Mutation p.V293E 0.18 deleterious(0) probably_damaging(0.986) TCGA-62-8394-01 10 135113555 135113555 T A TUBGCP2 Missense_Mutation p.K71N 0.08 deleterious(0) probably_damaging(1) TCGA-62-8394-01 10 37508672 37508672 T C ANKRD30A Silent p.A1288A 0.17 TCGA-62-8394-01 10 82363419 82363419 C G SH2D4B Missense_Mutation p.A243G 0.35 tolerated(0.13) benign(0.163) TCGA-62-8394-01 10 85956372 85956372 G A CDHR1 Missense_Mutation p.G88E 0.05 deleterious(0) probably_damaging(1) TCGA-62-8394-01 10 98469621 98469621 G T PIK3AP1 Missense_Mutation p.H45N 0.07 deleterious(0.01) benign(0.04) TCGA-62-8394-01 11 22294457 22294457 T G ANO5 Silent p.T719T 0.05 TCGA-62-8394-01 11 32954673 32954673 T G QSER1 Missense_Mutation p.I494M 0.09 tolerated(0.13) benign(0.372) TCGA-62-8394-01 11 49974388 49974388 T A OR4C13 Silent p.V138V 0.07 TCGA-62-8394-01 11 5270763 5270763 G A HBG1 Silent p.S50S 0.47 TCGA-62-8394-01 11 55861181 55861181 C A OR8I2 Nonsense_Mutation p.S133* 0.07 TCGA-62-8394-01 11 591448 591448 G T PHRF1 Missense_Mutation p.G162V 0.12 deleterious(0.02) benign(0.341) TCGA-62-8394-01 11 60233571 60233571 C A MS4A1 Missense_Mutation p.P172T 0.16 tolerated(0.12) possibly_damaging(0.538) TCGA-62-8394-01 11 61081540 61081540 G A DDB1 Missense_Mutation p.H578Y 0.21 tolerated(1) benign(0.004) TCGA-62-8394-01 11 62040481 62040481 C T SCGB2A2 3'UTR 0.10 TCGA-62-8394-01 11 64496353 64496353 G A RASGRP2 Nonsense_Mutation p.R585* 0.41 TCGA-62-8394-01 11 66190213 66190213 G T NPAS4 Missense_Mutation p.V167L 0.23 deleterious(0.03) benign(0.374) TCGA-62-8394-01 11 74716698 74716698 G T NEU3 Missense_Mutation p.G183C 0.08 deleterious(0) probably_damaging(0.999) TCGA-62-8394-01 11 88300463 88300463 G T GRM5 Missense_Mutation p.N796K 0.13 tolerated(0.05) probably_damaging(0.999) TCGA-62-8394-01 12 104067701 104067701 C T STAB2 Silent p.H796H 0.10 TCGA-62-8394-01 12 122079589 122079589 G A ORAI1 3'UTR 0.22 TCGA-62-8394-01 12 124856702 124856702 G C NCOR2 Silent p.L891L 0.07 TCGA-62-8394-01 12 18858159 18858159 C A PLCZ1 Nonsense_Mutation p.G269* 0.15 TCGA-62-8394-01 12 21175843 21175843 C T SLCO1B7 Missense_Mutation p.R134C 0.13 deleterious(0) probably_damaging(1) TCGA-62-8394-01 12 31254048 31254048 G C DDX11 Missense_Mutation p.R679T 0.04 deleterious(0) probably_damaging(0.999) TCGA-62-8394-01 12 44148332 44148335 TTTG - PUS7L Frame_Shift_Del p.N238Kfs*27 0.14 TCGA-62-8394-01 12 49412630 49412630 C G PRKAG1 5'Flank 0.12 TCGA-62-8394-01 13 112721923 112721923 A G SOX1 5'UTR 0.07 TCGA-62-8394-01 13 39541063 39541063 C A STOML3 Nonsense_Mutation p.E259* 0.39 TCGA-62-8394-01 13 50285092 50285092 C G KPNA3 Missense_Mutation p.V280L 0.06 deleterious(0) possibly_damaging(0.862) TCGA-62-8394-01 13 99947698 99947698 C G GPR183 Missense_Mutation p.E234D 0.09 tolerated(0.47) benign(0.09) TCGA-62-8394-01 14 101364294 101364294 C G AL117190.3 3'Flank 0.15 TCGA-62-8394-01 14 103570345 103570345 G T EXOC3L4 Missense_Mutation p.D373Y 0.12 deleterious(0.03) possibly_damaging(0.793) TCGA-62-8394-01 14 21897268 21897268 G A CHD8 Missense_Mutation p.P357L 0.06 tolerated_low_confidence(0.26) benign(0.04) TCGA-62-8394-01 14 23521729 23521729 C T CDH24 Missense_Mutation p.R439H 0.13 deleterious(0.01) probably_damaging(1) TCGA-62-8394-01 14 29237831 29237831 C T FOXG1 Missense_Mutation p.S449L 0.09 deleterious_low_confidence(0.05) benign(0.368) TCGA-62-8394-01 14 36005190 36005190 G C INSM2 3'UTR 0.33 TCGA-62-8394-01 15 25307523 25307523 T G SNORD116-5 RNA 0.14 TCGA-62-8394-01 15 31234219 31234219 G A MTMR10 Silent p.I596I 0.06 TCGA-62-8394-01 15 58306388 58306388 T C ALDH1A2 Missense_Mutation p.Q70R 0.18 deleterious(0.03) probably_damaging(0.998) TCGA-62-8394-01 15 75641338 75641338 C G NEIL1 Missense_Mutation p.S31C 0.09 deleterious(0.01) possibly_damaging(0.647) TCGA-62-8394-01 16 2143934 2143934 C A PKD1 Missense_Mutation p.A3567S 0.27 benign(0.285) TCGA-62-8394-01 16 24895389 24895389 A G SLC5A11 Missense_Mutation p.I201V 0.32 deleterious(0) probably_damaging(0.999) TCGA-62-8394-01 16 3632313 3632313 G A SLX4 3'UTR 0.12 TCGA-62-8394-01 16 83781743 83781743 G T CDH13 Missense_Mutation p.W570C 0.18 deleterious(0) probably_damaging(0.999) TCGA-62-8394-01 16 84215615 84215615 C T TAF1C Silent p.G257G 0.12 TCGA-62-8394-01 16 87377224 87377224 G T FBXO31 Missense_Mutation p.P213T 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-62-8394-01 16 89628078 89628078 C T RPL13 Silent p.N113N 0.31 TCGA-62-8394-01 17 10550742 10550742 C T MYH3 Missense_Mutation p.G246D 0.08 deleterious(0) probably_damaging(1) TCGA-62-8394-01 17 11985282 11985282 G T MAP2K4 Intron 0.12 TCGA-62-8394-01 17 15967384 15967384 G A NCOR1 Missense_Mutation p.P1740L 0.07 benign(0.069) TCGA-62-8394-01 17 25628923 25628923 T C WSB1 Silent p.A50A 0.13 TCGA-62-8394-01 17 26851533 26851533 T G FOXN1 Missense_Mutation p.F46V 0.19 deleterious_low_confidence(0) possibly_damaging(0.901) TCGA-62-8394-01 17 33491145 33491145 G A UNC45B Missense_Mutation p.E371K 0.03 deleterious(0.01) possibly_damaging(0.656) TCGA-62-8394-01 17 38346893 38346893 T C RAPGEFL1 Missense_Mutation p.V199A 0.04 tolerated(0.25) benign(0.011) TCGA-62-8394-01 17 40328187 40328187 G C KCNH4 Missense_Mutation p.F238L 0.05 tolerated(0.16) benign(0.003) TCGA-62-8394-01 17 61561748 61561748 C T ACE Silent p.V589V 0.11 TCGA-62-8394-01 17 61611659 61611659 C T KCNH6 Missense_Mutation p.T363I 0.07 deleterious(0.05) benign(0.255) TCGA-62-8394-01 17 62026871 62026871 G A SCN4A Silent p.L957L 0.14 TCGA-62-8394-01 17 7577117 7577117 A C TP53 Missense_Mutation p.V274G 0.55 deleterious(0) probably_damaging(0.997) TCGA-62-8394-01 17 7669666 7669666 C G DNAH2 Missense_Mutation p.S1181C 0.14 benign(0.246) TCGA-62-8394-01 18 13885208 13885208 C G MC2R Missense_Mutation p.D104H 0.05 deleterious(0) probably_damaging(1) TCGA-62-8394-01 18 77893677 77893677 C - ADNP2 Frame_Shift_Del p.H128Mfs*12 0.22 TCGA-62-8394-01 19 12780997 12780997 C T WDR83 Silent p.S76S 0.05 TCGA-62-8394-01 19 15760978 15760978 A G CYP4F3 Silent p.V301V 0.06 TCGA-62-8394-01 19 17664376 17664376 A G FAM129C 3'UTR 0.08 TCGA-62-8394-01 19 35434477 35434477 C T ZNF30 Missense_Mutation p.P204S 0.20 deleterious(0.03) benign(0.001) TCGA-62-8394-01 19 43858418 43858418 C A CD177 Missense_Mutation p.R85S 0.08 tolerated(0.09) possibly_damaging(0.732) TCGA-62-8394-01 19 44254841 44254841 C A SMG9 Missense_Mutation p.R18L 0.08 deleterious_low_confidence(0.01) probably_damaging(0.924) TCGA-62-8394-01 19 53994554 53994554 G A ZNF813 Silent p.K356K 0.19 TCGA-62-8394-01 19 56244797 56244797 C G NLRP9 Missense_Mutation p.E134Q 0.08 tolerated(0.55) benign(0.005) TCGA-62-8394-01 19 58371061 58371061 G C ZNF587 Missense_Mutation p.Q427H 0.05 tolerated(0.15) possibly_damaging(0.881) TCGA-62-8394-01 19 9639247 9639247 G A ZNF426 Nonsense_Mutation p.Q492* 0.05 TCGA-62-8394-01 1 120437940 120437940 C G ADAM30 Silent p.L340L 0.20 TCGA-62-8394-01 1 173799835 173799835 C T DARS2 Missense_Mutation p.P111L 0.08 deleterious(0) possibly_damaging(0.864) TCGA-62-8394-01 1 185089245 185089245 C G TRMT1L Missense_Mutation p.S703T 0.17 tolerated_low_confidence(0.11) benign(0.011) TCGA-62-8394-01 1 197297641 197297641 T C CRB1 Missense_Mutation p.C54R 0.16 deleterious(0) possibly_damaging(0.757) TCGA-62-8394-01 1 200974433 200974433 C T KIF21B Intron 0.09 TCGA-62-8394-01 1 22310245 22310245 C G CELA3B Missense_Mutation p.L141V 0.06 tolerated(0.51) benign(0.005) TCGA-62-8394-01 1 228362506 228362506 A G IBA57 Missense_Mutation p.E152G 0.27 tolerated(0.15) benign(0.149) TCGA-62-8394-01 1 234367481 234367481 G T SLC35F3 Missense_Mutation p.R201L 0.14 tolerated(0.76) benign(0.362) TCGA-62-8394-01 1 247614656 247614656 A C OR2B11 Missense_Mutation p.F210C 0.12 deleterious(0) probably_damaging(0.998) TCGA-62-8394-01 1 31188053 31188053 G C MATN1 Missense_Mutation p.F437L 0.08 deleterious(0) possibly_damaging(0.491) TCGA-62-8394-01 1 32751131 32751131 G T LCK Missense_Mutation p.E448D 0.08 tolerated(0.09) benign(0.445) TCGA-62-8394-01 1 90049344 90049344 C T LRRC8B Missense_Mutation p.L379F 0.08 deleterious(0) probably_damaging(0.991) TCGA-62-8394-01 1 90049439 90049439 G T LRRC8B Silent p.L410L 0.09 TCGA-62-8394-01 20 30436162 30436162 G T FOXS1 5'Flank 0.15 TCGA-62-8394-01 20 30436163 30436163 C T FOXS1 5'Flank 0.15 TCGA-62-8394-01 20 34203933 34203933 G T SPAG4 Missense_Mutation p.R3L 0.12 deleterious_low_confidence(0) unknown(0) TCGA-62-8394-01 20 34204074 34204074 G C SPAG4 Missense_Mutation p.R50T 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.701) TCGA-62-8394-01 20 45130930 45130930 C T ZNF334 Missense_Mutation p.E350K 0.10 tolerated(0.29) benign(0.029) TCGA-62-8394-01 20 7915153 7915153 G A HAO1 Silent p.D89D 0.16 TCGA-62-8394-01 21 10942711 10942711 C T TPTE Missense_Mutation p.E244K 0.06 deleterious(0.02) benign(0.108) TCGA-62-8394-01 21 45860715 45860715 C T TRPM2 Missense_Mutation p.A1438V 0.06 deleterious(0) probably_damaging(0.96) TCGA-62-8394-01 21 46642091 46642091 C T ADARB1 Silent p.D735D 0.08 TCGA-62-8394-01 22 21384420 21384420 G C SLC7A4 Silent p.A401A 0.17 TCGA-62-8394-01 22 23603146 23603146 G C BCR Missense_Mutation p.D491H 0.08 deleterious(0.01) probably_damaging(0.953) TCGA-62-8394-01 22 36876754 36876755 AC - TXN2 Frame_Shift_Del p.V44Nfs*19 0.09 TCGA-62-8394-01 22 38883889 38883889 C T DDX17 Missense_Mutation p.G560D 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.692) TCGA-62-8394-01 22 44004438 44004438 G A EFCAB6 Missense_Mutation p.R869C 0.06 deleterious(0) probably_damaging(0.995) TCGA-62-8394-01 22 51159540 51159540 C A SHANK3 Missense_Mutation p.F1109L 0.17 possibly_damaging(0.824) TCGA-62-8394-01 2 112944954 112944954 C G FBLN7 Missense_Mutation p.I397M 0.11 tolerated(0.15) probably_damaging(0.963) TCGA-62-8394-01 2 122494355 122494355 C G NIFK Missense_Mutation p.K24N 0.09 deleterious(0.02) possibly_damaging(0.897) TCGA-62-8394-01 2 153573945 153573945 G C PRPF40A Missense_Mutation p.S3R 0.06 tolerated_low_confidence(0.17) possibly_damaging(0.451) TCGA-62-8394-01 2 168106970 168106970 T A XIRP2 Missense_Mutation p.L3023H 0.11 probably_damaging(1) TCGA-62-8394-01 2 170493719 170493719 A T PPIG Missense_Mutation p.S651C 0.10 deleterious_low_confidence(0.04) unknown(0) TCGA-62-8394-01 2 183853802 183853802 G C NCKAP1 Missense_Mutation p.F307L 0.10 tolerated(1) benign(0.002) TCGA-62-8394-01 2 196737106 196737106 G C DNAH7 Silent p.L2167L 0.05 TCGA-62-8394-01 2 28854920 28854920 C T PLB1 Silent p.F1305F 0.06 TCGA-62-8394-01 2 32366999 32366999 C G SPAST Missense_Mutation p.S507C 0.12 tolerated(0.08) possibly_damaging(0.836) TCGA-62-8394-01 2 48741987 48741987 A G PPP1R21 3'UTR 0.17 TCGA-62-8394-01 2 48958435 48958435 G A LHCGR Missense_Mutation p.S55L 0.22 tolerated(0.82) benign(0.015) TCGA-62-8394-01 2 54853322 54853322 A C SPTBN1 Missense_Mutation p.K532T 0.38 deleterious(0.04) possibly_damaging(0.574) TCGA-62-8394-01 2 74460691 74460691 C G SLC4A5 Splice_Site p.X812_splice 0.14 TCGA-62-8394-01 2 74867189 74867189 G T M1AP Missense_Mutation p.Q72K 0.18 deleterious(0.01) benign(0.319) TCGA-62-8394-01 2 96811154 96811154 G A DUSP2 5'UTR 0.18 TCGA-62-8394-01 3 155628911 155628911 C T GMPS Silent p.L243L 0.10 TCGA-62-8394-01 3 169485232 169485232 T C ACTRT3 Silent p.Q369Q 0.09 TCGA-62-8394-01 3 193856066 193856066 C G HES1 3'UTR 0.18 TCGA-62-8394-01 3 195492166 195492166 G A MUC4 Silent p.D4591D 0.07 TCGA-62-8394-01 3 43121448 43121448 C T POMGNT2 Silent p.A492A 0.19 TCGA-62-8394-01 4 122682998 122682998 A C TMEM155 Missense_Mutation p.L14R 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.7) TCGA-62-8394-01 4 146823697 146823697 C A ZNF827 Missense_Mutation p.E238D 0.25 tolerated(0.69) probably_damaging(0.99) TCGA-62-8394-01 4 164394734 164394734 G C TKTL2 Silent p.V51V 0.15 TCGA-62-8394-01 4 174089914 174089914 G C GALNT7 5'UTR 0.50 TCGA-62-8394-01 4 187455380 187455380 C T MTNR1A Silent p.P172P 0.05 TCGA-62-8394-01 5 109153058 109153058 C G MAN2A1 Missense_Mutation p.F676L 0.12 tolerated(1) benign(0.001) TCGA-62-8394-01 5 110409232 110409232 G C TSLP Missense_Mutation p.Q80H 0.04 deleterious(0.01) possibly_damaging(0.481) TCGA-62-8394-01 5 11111151 11111151 A G CTNND2 Missense_Mutation p.V761A 0.03 deleterious(0) probably_damaging(0.962) TCGA-62-8394-01 5 132534871 132534871 G A FSTL4 Silent p.L815L 0.34 TCGA-62-8394-01 5 148617020 148617020 G C ABLIM3 Missense_Mutation p.D300H 0.11 deleterious(0.04) benign(0.036) TCGA-62-8394-01 5 154172335 154172335 C T LARP1 Nonsense_Mutation p.R163* 0.34 TCGA-62-8394-01 5 175794968 175794968 C A ARL10 Intron 0.17 TCGA-62-8394-01 5 54424357 54424357 A T CDC20B Missense_Mutation p.N262K 0.19 tolerated(0.45) benign(0.01) TCGA-62-8394-01 5 56168498 56168498 C A MAP3K1 Missense_Mutation p.P485H 0.25 deleterious(0) possibly_damaging(0.488) TCGA-62-8394-01 6 114379171 114379171 C G HS3ST5 Silent p.G97G 0.40 TCGA-62-8394-01 6 158923996 158923996 G C TULP4 Missense_Mutation p.E1101Q 0.06 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-62-8394-01 6 160453657 160453657 C G IGF2R Missense_Mutation p.H319Q 0.12 tolerated(0.06) possibly_damaging(0.693) TCGA-62-8394-01 6 166571968 166571968 C A T Silent p.A381A 0.11 TCGA-62-8394-01 6 30128538 30128538 T G TRIM10 Missense_Mutation p.H33P 0.04 deleterious(0.02) probably_damaging(0.999) TCGA-62-8394-01 6 42146546 42146546 C T GUCA1A Missense_Mutation p.R120C 0.20 deleterious(0) probably_damaging(0.964) TCGA-62-8394-01 7 100608808 100608808 C G MUC3A Silent p.V729V 0.05 TCGA-62-8394-01 7 110762855 110762855 T A LRRN3 Missense_Mutation p.H9Q 0.19 tolerated(0.45) benign(0.007) TCGA-62-8394-01 7 11142223 11142223 A G PHF14 3'UTR 0.14 TCGA-62-8394-01 7 133876489 133876489 G A LRGUK Missense_Mutation p.E473K 0.26 tolerated(0.53) benign(0.044) TCGA-62-8394-01 7 150754062 150754062 C T CDK5 Missense_Mutation p.G43S 0.24 deleterious(0) probably_damaging(1) TCGA-62-8394-01 7 55259515 55259515 T G EGFR Missense_Mutation p.L858R 0.41 deleterious(0) probably_damaging(1) TCGA-62-8394-01 7 97363588 97363588 G C TAC1 Silent p.L83L 0.15 TCGA-62-8394-01 7 99084759 99084759 G C ZNF789 Missense_Mutation p.G309A 0.09 deleterious(0) probably_damaging(0.994) TCGA-62-8394-01 7 99914762 99914762 C T SPDYE3 Missense_Mutation p.H444Y 0.04 deleterious(0.03) probably_damaging(0.948) TCGA-62-8394-01 8 105509462 105509462 G T LRP12 Missense_Mutation p.P440T 0.05 deleterious(0) probably_damaging(0.999) TCGA-62-8394-01 8 145699898 145699898 C A FOXH1 Missense_Mutation p.W274L 0.10 tolerated(0.1) benign(0.01) TCGA-62-8394-01 8 21977320 21977320 G A HR Missense_Mutation p.P977L 0.06 tolerated(0.35) benign(0.014) TCGA-62-8394-01 8 95262535 95262535 T C GEM 3'UTR 0.33 TCGA-62-8394-01 9 108126955 108126955 C A SLC44A1 Missense_Mutation p.Q403K 0.13 deleterious(0) possibly_damaging(0.884) TCGA-62-8394-01 9 125920382 125920382 G C STRBP Silent p.A318A 0.24 TCGA-62-8394-01 9 127113174 127113174 G A NEK6 Missense_Mutation p.G331E 0.07 tolerated(1) benign(0.008) TCGA-62-8394-01 9 139091560 139091560 C T LHX3 Missense_Mutation p.V145M 0.09 deleterious(0.01) possibly_damaging(0.905) TCGA-62-8394-01 9 35101478 35101478 T G STOML2 Missense_Mutation p.Y175S 0.42 deleterious(0) probably_damaging(1) TCGA-62-8394-01 X 101092607 101092607 T C NXF5 Silent p.L313L 0.14 TCGA-62-8394-01 X 101970548 101970548 G C GPRASP2 Missense_Mutation p.E251Q 0.03 deleterious(0.01) possibly_damaging(0.826) TCGA-62-8394-01 X 103497486 103497486 T A ESX1 Missense_Mutation p.N177I 0.09 deleterious(0) benign(0.385) TCGA-62-8394-01 X 109697785 109697785 G A RGAG1 Missense_Mutation p.E1314K 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-62-8394-01 X 11139855 11139855 C T HCCS Silent p.D244D 0.09 TCGA-62-8394-01 X 119005489 119005489 G A RNF113A Missense_Mutation p.R30C 0.14 deleterious(0.03) benign(0.004) TCGA-62-8394-01 X 128645931 128645931 A T SMARCA1 Silent p.A220A 0.07 TCGA-62-8394-01 X 135445703 135445703 C T GPR112 Nonsense_Mutation p.Q2449* 0.08 TCGA-62-8394-01 X 138820082 138820082 C T ATP11C Missense_Mutation p.S1097N 0.09 tolerated(0.55) benign(0) TCGA-62-8394-01 X 153662714 153662714 G T ATP6AP1 Missense_Mutation p.W282L 0.12 tolerated(0.23) benign(0.003) TCGA-62-8394-01 X 1536942 1536942 G A ASMTL Silent p.D482D 0.06 TCGA-62-8394-01 X 27766390 27766390 A G DCAF8L2 Missense_Mutation p.S460G 0.08 deleterious(0.04) benign(0.001) TCGA-62-8394-01 X 32407666 32407666 T C DMD Silent p.T1490T 0.37 TCGA-62-8394-01 X 47509898 47509898 C A ELK1 5'Flank 0.18 TCGA-62-8394-01 X 79698669 79698669 T G FAM46D Missense_Mutation p.F211V 0.14 deleterious(0.04) probably_damaging(1) TCGA-62-8394-01 X 82763778 82763778 G C POU3F4 Missense_Mutation p.G149A 0.08 tolerated(0.1) benign(0.005) TCGA-62-8394-01 X 9001087 9001087 G A FAM9B 5'UTR 0.10 TCGA-62-8394-01 X 92927112 92927112 C T NAP1L3 Missense_Mutation p.D398N 0.09 tolerated(0.1) probably_damaging(0.945) TCGA-62-8395-01 10 102748608 102748608 C G C10orf2 Nonsense_Mutation p.S214* 0.18 TCGA-62-8395-01 10 12940464 12940464 C T CCDC3 Silent p.P255P 0.34 TCGA-62-8395-01 10 34558771 34558771 G A PARD3 Missense_Mutation p.A1081V 0.21 deleterious(0.01) benign(0.443) TCGA-62-8395-01 10 70405206 70405206 A G TET1 Missense_Mutation p.N907S 0.33 tolerated(0.18) benign(0.104) TCGA-62-8395-01 10 71654450 71654450 G C COL13A1 Missense_Mutation p.G208A 0.07 deleterious(0) probably_damaging(0.998) TCGA-62-8395-01 10 97181826 97181826 C G SORBS1 Missense_Mutation p.E111D 0.12 tolerated_low_confidence(0.74) benign(0.004) TCGA-62-8395-01 11 113688419 113688419 G T USP28 Nonsense_Mutation p.S475* 0.11 TCGA-62-8395-01 11 65688920 65688920 C T DRAP1 3'UTR 0.20 TCGA-62-8395-01 12 27817349 27817349 G C PPFIBP1 Missense_Mutation p.D341H 0.12 deleterious(0) possibly_damaging(0.67) TCGA-62-8395-01 13 23930039 23930039 T C SACS Missense_Mutation p.K238E 0.08 benign(0.006) TCGA-62-8395-01 13 36766025 36766025 G A SOHLH2 Missense_Mutation p.T223I 0.43 tolerated(0.27) benign(0) TCGA-62-8395-01 14 102476332 102476332 C - DYNC1H1 Frame_Shift_Del p.D2045Tfs*4 0.26 TCGA-62-8395-01 14 106573460 106573460 C T IGHV3-11 Missense_Mutation p.A42T 0.22 deleterious_low_confidence(0.03) benign(0.109) TCGA-62-8395-01 15 101887971 101888000 AGTCCAGGTTCCCTGGAAAACAAGGGACTG - PCSK6 Intron 0.26 TCGA-62-8395-01 15 22866721 22866721 C T TUBGCP5 Missense_Mutation p.S778F 0.38 deleterious(0.01) benign(0.217) TCGA-62-8395-01 15 33993256 33993256 G T RYR3 Missense_Mutation p.S2153I 0.23 benign(0.063) TCGA-62-8395-01 15 40660584 40660584 C - DISP2 Frame_Shift_Del p.L758Cfs*39 0.14 TCGA-62-8395-01 16 76461394 76461394 C A CNTNAP4 Missense_Mutation p.L121I 0.04 deleterious(0) probably_damaging(0.914) TCGA-62-8395-01 16 784289 784289 G A NARFL Silent p.T211T 0.18 TCGA-62-8395-01 17 48750367 48750367 C G ABCC3 Silent p.V759V 0.16 TCGA-62-8395-01 17 55183939 55183939 G T AKAP1 Missense_Mutation p.A372S 0.26 tolerated(1) benign(0.003) TCGA-62-8395-01 17 55183940 55183940 C A AKAP1 Missense_Mutation p.A372E 0.26 tolerated(0.06) benign(0.005) TCGA-62-8395-01 17 72700743 72700743 G C CD300LF Missense_Mutation p.Q86E 0.06 deleterious(0.04) benign(0.328) TCGA-62-8395-01 18 10680252 10680252 G A PIEZO2 Silent p.H2519H 0.19 TCGA-62-8395-01 18 21483062 21483062 G A LAMA3 Silent p.A2097A 0.26 TCGA-62-8395-01 18 3742495 3742495 G C DLGAP1 Nonsense_Mutation p.S397* 0.28 TCGA-62-8395-01 18 5443840 5443840 G A EPB41L3 Nonsense_Mutation p.R176* 0.11 TCGA-62-8395-01 19 18194273 18194273 A G IL12RB1 Silent p.F31F 0.14 TCGA-62-8395-01 19 19312382 19312382 G A NR2C2AP 3'UTR 0.05 TCGA-62-8395-01 19 2213959 2213959 G A DOT1L Missense_Mutation p.A591T 0.29 tolerated(0.19) benign(0.115) TCGA-62-8395-01 19 39867145 39867145 G A SAMD4B Missense_Mutation p.E326K 0.07 deleterious(0.03) benign(0.033) TCGA-62-8395-01 19 41811594 41811594 A C HNRNPUL1 Missense_Mutation p.Q759P 0.20 deleterious_low_confidence(0.02) benign(0.153) TCGA-62-8395-01 19 55048266 55048266 C A KIR3DX1 Missense_Mutation p.A278D 0.06 deleterious(0.03) probably_damaging(0.959) TCGA-62-8395-01 19 55331452 55331452 G A KIR3DL1 Missense_Mutation p.D214N 0.05 tolerated(0.05) benign(0.008) TCGA-62-8395-01 1 158576787 158576787 C A OR10Z1 Missense_Mutation p.L187I 0.10 deleterious(0.01) benign(0.062) TCGA-62-8395-01 1 16065838 16065838 C G SLC25A34 Silent p.L284L 0.08 TCGA-62-8395-01 1 180886141 180886141 G A KIAA1614 Missense_Mutation p.R301H 0.16 deleterious(0) probably_damaging(0.999) TCGA-62-8395-01 1 21926031 21926031 C T RAP1GAP Missense_Mutation p.V642M 0.32 tolerated(0.11) probably_damaging(0.978) TCGA-62-8395-01 1 2283252 2283252 C G MORN1 Intron 0.10 TCGA-62-8395-01 1 233749988 233749988 G A KCNK1 Missense_Mutation p.G24D 0.09 tolerated(0.15) benign(0.029) TCGA-62-8395-01 1 246498678 246498678 G A SMYD3 Silent p.V109V 0.05 TCGA-62-8395-01 1 33832803 33832803 T C PHC2 Missense_Mutation p.N297S 0.39 tolerated(0.98) benign(0.001) TCGA-62-8395-01 1 46495140 46495140 G A MAST2 Missense_Mutation p.E741K 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.51) TCGA-62-8395-01 1 85279571 85279571 A G LPAR3 Silent p.D340D 0.09 TCGA-62-8395-01 1 94526191 94526191 T A ABCA4 Missense_Mutation p.N688Y 0.23 deleterious(0.03) possibly_damaging(0.515) TCGA-62-8395-01 20 7875803 7875803 G C HAO1 Missense_Mutation p.Q264E 0.10 deleterious(0) probably_damaging(0.984) TCGA-62-8395-01 21 37586432 37586432 T G DOPEY2 Missense_Mutation p.Y320D 0.24 tolerated(0.2) benign(0.001) TCGA-62-8395-01 22 34046532 34046532 G A LARGE Missense_Mutation p.R77C 0.21 deleterious_low_confidence(0) possibly_damaging(0.724) TCGA-62-8395-01 2 128477061 128477061 C T WDR33 Silent p.L846L 0.06 TCGA-62-8395-01 2 153504313 153504314 TT - FMNL2 Frame_Shift_Del p.L1058Qfs*20 0.15 TCGA-62-8395-01 2 159530506 159530506 C T PKP4 Nonsense_Mutation p.Q1041* 0.14 TCGA-62-8395-01 2 170042394 170042396 TCA - LRP2 In_Frame_Del p.D3154del 0.10 TCGA-62-8395-01 2 178098959 178098959 T C NFE2L2 Missense_Mutation p.D29G 0.18 deleterious(0) probably_damaging(1) TCGA-62-8395-01 2 17881630 17881630 C G SMC6 Missense_Mutation p.E747Q 0.10 deleterious(0.01) possibly_damaging(0.626) TCGA-62-8395-01 2 219290443 219290443 G A VIL1 Missense_Mutation p.D86N 0.18 deleterious(0.01) possibly_damaging(0.875) TCGA-62-8395-01 2 45646959 45646959 C T SRBD1 Silent p.V708V 0.21 TCGA-62-8395-01 2 75921396 75921396 C G GCFC2 Missense_Mutation p.E331Q 0.08 tolerated(0.32) possibly_damaging(0.848) TCGA-62-8395-01 3 10392085 10392085 C T ATP2B2 Silent p.G771G 0.31 TCGA-62-8395-01 3 119466053 119466053 C A MAATS1 Missense_Mutation p.A665E 0.37 tolerated(1) benign(0.003) TCGA-62-8395-01 3 1415317 1415317 G A CNTN6 Missense_Mutation p.V606M 0.29 deleterious(0.01) probably_damaging(0.965) TCGA-62-8395-01 3 176752076 176752076 A G TBL1XR1 Missense_Mutation p.L387S 0.15 deleterious(0) possibly_damaging(0.9) TCGA-62-8395-01 3 196663952 196663952 A G NCBP2 Missense_Mutation p.V134A 0.11 deleterious(0.03) benign(0.359) TCGA-62-8395-01 3 52257297 52257297 G A TLR9 Silent p.Y499Y 0.35 TCGA-62-8395-01 4 114899693 114899693 T C ARSJ Missense_Mutation p.T100A 0.25 deleterious(0) probably_damaging(0.98) TCGA-62-8395-01 4 119951019 119951019 C T SYNPO2 Silent p.S363S 0.31 TCGA-62-8395-01 4 138450767 138450767 G A PCDH18 Missense_Mutation p.P826S 0.12 tolerated(0.06) probably_damaging(0.98) TCGA-62-8395-01 4 146823705 146823708 GCAT - ZNF827 Frame_Shift_Del p.M235Dfs*30 0.22 TCGA-62-8395-01 4 38775656 38775656 G A TLR10 Missense_Mutation p.A519V 0.15 deleterious(0.04) benign(0.043) TCGA-62-8395-01 4 48422152 48422152 A T SLAIN2 Silent p.P457P 0.24 TCGA-62-8395-01 5 112174472 112174475 AAAC - APC Frame_Shift_Del p.Q1062Vfs*63 0.27 TCGA-62-8395-01 5 138163365 138163365 C T CTNNA1 Silent p.V340V 0.16 TCGA-62-8395-01 5 176793799 176793799 C T RGS14 Nonsense_Mutation p.Q113* 0.08 TCGA-62-8395-01 5 56219657 56219657 G C MIER3 Missense_Mutation p.D351E 0.31 deleterious(0.01) probably_damaging(0.981) TCGA-62-8395-01 5 61676955 61676955 G A KIF2A Missense_Mutation p.R675Q 0.48 tolerated(0.43) possibly_damaging(0.898) TCGA-62-8395-01 5 88047769 88047769 C T MEF2C Missense_Mutation p.G183E 0.07 tolerated(0.06) probably_damaging(1) TCGA-62-8395-01 6 100957984 100957984 C A ASCC3 Splice_Site p.X2096_splice 0.26 TCGA-62-8395-01 6 24446044 24446044 T G GPLD1 Missense_Mutation p.L612F 0.07 tolerated(0.97) benign(0.001) TCGA-62-8395-01 6 30128211 30128211 T C TRIM10 Missense_Mutation p.Y142C 0.05 deleterious(0) probably_damaging(0.959) TCGA-62-8395-01 6 3224999 3224999 C T TUBB2B Missense_Mutation p.E442K 0.40 deleterious_low_confidence(0.05) unknown(0) TCGA-62-8395-01 6 44216503 44216503 A C HSP90AB1 Missense_Mutation p.N46T 0.08 deleterious(0) probably_damaging(0.999) TCGA-62-8395-01 6 56473731 56473731 G A DST Intron 0.07 TCGA-62-8395-01 7 48314637 48314637 G A ABCA13 Missense_Mutation p.A1792T 0.11 benign(0.015) TCGA-62-8395-01 8 41548112 41548112 C A ANK1 Missense_Mutation p.L1329F 0.26 deleterious(0.01) benign(0.02) TCGA-62-8395-01 8 41550204 41550204 C T ANK1 Missense_Mutation p.E1315K 0.27 deleterious(0.01) benign(0.192) TCGA-62-8395-01 9 125042860 125042860 A G MRRF Missense_Mutation p.N108S 0.13 tolerated(1) benign(0.02) TCGA-62-8395-01 X 131212858 131212858 G C FRMD7 Missense_Mutation p.S396C 0.28 deleterious(0) possibly_damaging(0.853) TCGA-62-8395-01 X 154159595 154159595 A G F8 Silent p.L824L 0.33 TCGA-62-8395-01 X 1584436 1584436 G A P2RY8 Missense_Mutation p.A339V 0.07 tolerated(0.23) benign(0.001) TCGA-62-8395-01 X 24006484 24006484 G A KLHL15 Missense_Mutation p.R457W 0.22 deleterious_low_confidence(0.02) possibly_damaging(0.639) TCGA-62-8395-01 X 46618198 46618198 C G SLC9A7 Missense_Mutation p.W89C 0.21 deleterious(0) probably_damaging(0.998) TCGA-62-8395-01 X 48547388 48547388 G A WAS Missense_Mutation p.G424D 0.24 tolerated(0.45) unknown(0) TCGA-62-8395-01 X 79999689 79999689 G A BRWD3 Missense_Mutation p.R219C 0.06 deleterious(0) probably_damaging(0.999) TCGA-62-8395-01 X 96139765 96139765 C T RPA4 Silent p.N152N 0.11 TCGA-62-8397-01 10 292708 292708 C T ZMYND11 Missense_Mutation p.A318V 0.25 deleterious(0) possibly_damaging(0.803) TCGA-62-8397-01 10 89120919 89120919 C T NUTM2D Missense_Mutation p.A283V 0.12 deleterious(0) probably_damaging(0.997) TCGA-62-8397-01 11 5067912 5067912 G T OR52J3 Missense_Mutation p.V53L 0.53 deleterious(0.02) benign(0.001) TCGA-62-8397-01 12 49434685 49434685 C - KMT2D Frame_Shift_Del p.E2290Kfs*32 0.33 TCGA-62-8397-01 15 44921455 44921455 T G SPG11 Missense_Mutation p.K623Q 0.35 tolerated(0.09) benign(0.005) TCGA-62-8397-01 15 89755000 89755000 G T RLBP1 Missense_Mutation p.L220I 0.22 tolerated(0.06) probably_damaging(0.99) TCGA-62-8397-01 15 89758399 89758399 G A RLBP1 Silent p.T139T 0.13 TCGA-62-8397-01 16 51175050 51175050 C T SALL1 Silent p.G361G 0.28 TCGA-62-8397-01 16 57792690 57792690 G C KIFC3 3'UTR 0.18 TCGA-62-8397-01 17 18167985 18167985 C T MIEF2 Silent p.S435S 0.59 TCGA-62-8397-01 17 21825411 21825411 G A FAM27L RNA 0.69 TCGA-62-8397-01 17 42513913 42513913 C A GPATCH8 Missense_Mutation p.G65V 0.72 deleterious_low_confidence(0) probably_damaging(1) TCGA-62-8397-01 17 42513914 42513914 C A GPATCH8 Splice_Site p.X65_splice 0.71 TCGA-62-8397-01 19 19680947 19680947 C T PBX4 Missense_Mutation p.M201I 0.60 tolerated(0.11) benign(0.11) TCGA-62-8397-01 19 50979475 50979475 C T FAM71E1 Silent p.P57P 0.59 TCGA-62-8397-01 1 57349283 57349283 T A C8A Missense_Mutation p.L262M 0.22 tolerated(0.23) benign(0.001) TCGA-62-8397-01 20 34240378 34240378 G A RBM12 3'UTR 0.57 TCGA-62-8397-01 2 1638057 1638058 - G PXDN Frame_Shift_Ins p.A1454Cfs*42 0.35 TCGA-62-8397-01 2 216226286 216226286 G - FN1 Frame_Shift_Del p.R2476Efs*24 0.16 TCGA-62-8397-01 3 184001716 184001716 C T ECE2 Silent p.R438R 0.14 TCGA-62-8397-01 3 38913145 38913145 C G SCN11A Missense_Mutation p.V1184L 0.53 deleterious(0.03) probably_damaging(0.999) TCGA-62-8397-01 3 51196725 51196725 G T DOCK3 Silent p.V293V 0.36 TCGA-62-8397-01 4 38126700 38126700 A G TBC1D1 Missense_Mutation p.K1027R 0.28 deleterious(0) possibly_damaging(0.761) TCGA-62-8397-01 4 38126718 38126718 T G TBC1D1 Missense_Mutation p.L1033R 0.28 deleterious(0) probably_damaging(0.96) TCGA-62-8397-01 5 149441326 149441326 G T CSF1R Nonsense_Mutation p.Y571* 0.14 TCGA-62-8397-01 6 108222676 108222676 C T SEC63 Missense_Mutation p.D419N 0.50 deleterious(0.01) possibly_damaging(0.733) TCGA-62-8397-01 6 70037717 70037717 C A BAI3 Missense_Mutation p.P991T 0.32 deleterious(0) probably_damaging(0.999) TCGA-62-8397-01 7 44524807 44524807 C T NUDCD3 Missense_Mutation p.R90K 0.25 tolerated(0.87) benign(0) TCGA-62-8397-01 7 76255354 76255356 TCC - POMZP3 In_Frame_Del p.R9del 0.19 TCGA-62-8397-01 8 132982870 132982870 A G EFR3A Missense_Mutation p.N380S 0.36 deleterious(0.04) benign(0.012) TCGA-62-8397-01 9 21166060 21166060 T A IFNA21 Missense_Mutation p.R184S 0.41 deleterious(0.04) benign(0.038) TCGA-62-8397-01 X 102974035 102974035 C T GLRA4 Missense_Mutation p.V295M 0.22 deleterious(0) probably_damaging(0.982) TCGA-62-8397-01 X 130412683 130412683 G A IGSF1 Missense_Mutation p.T603I 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-62-8397-01 X 18959758 18959758 T A PHKA2 Silent p.T251T 0.25 TCGA-62-8397-01 X 48382378 48382378 G A EBP Silent p.G73G 0.22 TCGA-62-8397-01 X 99933637 99933637 G A SYTL4 Intron 0.21 TCGA-62-8398-01 10 101816836 101816836 G T CPN1 Silent p.P315P 0.28 TCGA-62-8398-01 10 48388939 48388939 G T RBP3 Missense_Mutation p.L647M 0.35 deleterious(0.01) possibly_damaging(0.665) TCGA-62-8398-01 11 108235833 108235833 G A ATM Missense_Mutation p.D2959N 0.24 deleterious(0.05) benign(0.217) TCGA-62-8398-01 11 11959861 11959861 T A USP47 Missense_Mutation p.I644K 0.29 deleterious(0.01) benign(0.33) TCGA-62-8398-01 11 121340812 121340812 G T SORL1 Missense_Mutation p.A128S 0.28 tolerated(0.65) benign(0.003) TCGA-62-8398-01 11 129830884 129830884 G T PRDM10 5'UTR 0.39 TCGA-62-8398-01 11 132177693 132177693 C T NTM Missense_Mutation p.R213W 0.32 deleterious(0) probably_damaging(0.969) TCGA-62-8398-01 11 22396404 22396404 C G SLC17A6 Missense_Mutation p.T382R 0.26 deleterious(0) possibly_damaging(0.807) TCGA-62-8398-01 11 56085806 56085806 G T OR8K3 Silent p.T8T 0.22 TCGA-62-8398-01 11 58723459 58723459 C T GLYATL1 Missense_Mutation p.H321Y 0.30 deleterious(0.03) possibly_damaging(0.785) TCGA-62-8398-01 11 59211013 59211013 C T OR5A1 Silent p.D124D 0.28 TCGA-62-8398-01 11 60695146 60695146 C T TMEM132A Missense_Mutation p.R117W 0.29 tolerated(0.18) benign(0.005) TCGA-62-8398-01 11 62561739 62561739 C A NXF1 Missense_Mutation p.W584L 0.33 deleterious(0.01) possibly_damaging(0.904) TCGA-62-8398-01 11 7960522 7960522 G A OR10A3 Silent p.P182P 0.17 TCGA-62-8398-01 11 7960534 7960534 G A OR10A3 Silent p.F178F 0.17 TCGA-62-8398-01 11 88780926 88780926 C A GRM5 Missense_Mutation p.A39S 0.47 deleterious(0) probably_damaging(0.991) TCGA-62-8398-01 11 92430552 92430552 C G FAT3 Missense_Mutation p.L1204V 0.28 benign(0.12) TCGA-62-8398-01 12 11420620 11420620 G T PRB3 Missense_Mutation p.P188Q 0.57 deleterious(0) unknown(0) TCGA-62-8398-01 12 129558508 129558508 T A TMEM132D Missense_Mutation p.D1071V 0.63 deleterious(0) benign(0.361) TCGA-62-8398-01 12 13761554 13761554 C A GRIN2B Missense_Mutation p.G665C 0.16 deleterious(0) probably_damaging(0.999) TCGA-62-8398-01 12 18534714 18534714 G T PIK3C2G Missense_Mutation p.G591V 0.16 deleterious(0.01) probably_damaging(0.912) TCGA-62-8398-01 12 20864321 20864321 T A SLCO1C1 Missense_Mutation p.Y136N 0.11 deleterious(0) probably_damaging(0.98) TCGA-62-8398-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.50 deleterious(0) benign(0.361) TCGA-62-8398-01 12 32975435 32975435 C G PKP2 Missense_Mutation p.G646A 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-62-8398-01 12 56093710 56093710 T C ITGA7 Intron 0.51 TCGA-62-8398-01 14 107131117 107131117 G A IGHV3-66 Silent p.I88I 0.18 TCGA-62-8398-01 14 21462971 21462971 G T METTL17 Missense_Mutation p.V263L 0.22 deleterious(0.02) possibly_damaging(0.754) TCGA-62-8398-01 14 21550564 21550564 G A ARHGEF40 Missense_Mutation p.R1138Q 0.15 deleterious(0.05) benign(0.073) TCGA-62-8398-01 14 36960420 36960420 T C SFTA3 Missense_Mutation p.E40G 0.50 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-62-8398-01 14 39762563 39762563 A G CTAGE5 Missense_Mutation p.K163R 0.29 deleterious(0.05) possibly_damaging(0.868) TCGA-62-8398-01 15 23811282 23811282 C T MKRN3 Missense_Mutation p.S118L 0.32 tolerated(0.06) probably_damaging(0.996) TCGA-62-8398-01 16 20396021 20396021 G T PDILT Missense_Mutation p.P119T 0.32 deleterious(0) probably_damaging(1) TCGA-62-8398-01 16 20871245 20871245 G A DCUN1D3 Missense_Mutation p.S293L 0.36 deleterious_low_confidence(0.03) benign(0.001) TCGA-62-8398-01 16 20944532 20944532 G T DNAH3 Missense_Mutation p.P4099T 0.35 deleterious(0.04) benign(0.192) TCGA-62-8398-01 16 67286582 67286582 C T SLC9A5 Missense_Mutation p.L109F 0.26 tolerated(1) probably_damaging(0.968) TCGA-62-8398-01 16 67574550 67574550 G A FAM65A Silent p.V268V 0.49 TCGA-62-8398-01 16 67682107 67682107 C T RLTPR Silent p.P408P 0.41 TCGA-62-8398-01 16 89347439 89347439 C A ANKRD11 Silent p.P1837P 0.29 TCGA-62-8398-01 16 9923439 9923439 G A GRIN2A Silent p.S616S 0.33 TCGA-62-8398-01 17 16612935 16612935 C T CCDC144A Nonsense_Mutation p.Q522* 0.24 TCGA-62-8398-01 17 43220823 43220823 G A ACBD4 Missense_Mutation p.G281S 0.37 tolerated_low_confidence(0.16) benign(0.036) TCGA-62-8398-01 17 674623 674623 T G GLOD4 Missense_Mutation p.K162T 0.39 tolerated(0.34) benign(0.007) TCGA-62-8398-01 18 34752961 34752961 T G KIAA1328 Missense_Mutation p.D480E 0.34 deleterious(0) probably_damaging(0.999) TCGA-62-8398-01 18 7024459 7024459 G T LAMA1 Missense_Mutation p.S803R 0.33 deleterious(0) probably_damaging(0.999) TCGA-62-8398-01 18 76829417 76829417 G T ATP9B Missense_Mutation p.D3Y 0.32 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-62-8398-01 19 10428203 10428203 T A RAVER1 Missense_Mutation p.Y733F 0.46 deleterious(0.01) probably_damaging(0.986) TCGA-62-8398-01 19 10602289 10602289 C A KEAP1 Missense_Mutation p.G430V 0.56 deleterious(0) probably_damaging(0.988) TCGA-62-8398-01 19 36303780 36303780 C A PRODH2 Silent p.L52L 0.26 TCGA-62-8398-01 19 38135586 38135586 C A ZFP30 Nonsense_Mutation p.E21* 0.42 TCGA-62-8398-01 19 47424463 47424463 T C ARHGAP35 Missense_Mutation p.F844S 0.23 tolerated(0.4) benign(0.307) TCGA-62-8398-01 19 49999703 49999703 C T RPS11 5'UTR 0.32 TCGA-62-8398-01 19 55698925 55698925 G T PTPRH Missense_Mutation p.A841D 0.22 probably_damaging(0.924) TCGA-62-8398-01 19 57175563 57175563 G T ZNF835 Missense_Mutation p.A335E 0.50 tolerated(1) benign(0.098) TCGA-62-8398-01 19 5789642 5789642 C A DUS3L Missense_Mutation p.G159V 0.42 deleterious(0) probably_damaging(0.924) TCGA-62-8398-01 19 58132406 58132406 G T ZNF134 Nonsense_Mutation p.E307* 0.21 TCGA-62-8398-01 1 1322674 1322674 C T CCNL2 Silent p.S500S 0.05 TCGA-62-8398-01 1 152636890 152636890 C T LCE2D Silent p.C103C 0.33 TCGA-62-8398-01 1 152671750 152671750 A G LCE2A 3'UTR 0.25 TCGA-62-8398-01 1 153603049 153603049 G A S100A1 Missense_Mutation p.A18T 0.09 tolerated(0.17) benign(0.004) TCGA-62-8398-01 1 158990263 158990263 C T IFI16 Missense_Mutation p.L369F 0.18 deleterious(0) probably_damaging(0.946) TCGA-62-8398-01 1 170967371 170967371 A T MROH9 Nonsense_Mutation p.R518* 0.27 TCGA-62-8398-01 1 248790187 248790187 G T OR2T11 Missense_Mutation p.D81E 0.39 deleterious(0) benign(0.157) TCGA-62-8398-01 1 27087885 27087906 GCCACCTCGGCCACCCAGTGGC - ARID1A Frame_Shift_Del p.M724Ifs*11 0.18 TCGA-62-8398-01 1 86591207 86591207 G T COL24A1 Missense_Mutation p.P271H 0.53 tolerated(0.43) benign(0.005) TCGA-62-8398-01 20 33345360 33345360 G A NCOA6 Silent p.G397G 0.34 TCGA-62-8398-01 20 45129868 45129868 T G ZNF334 3'UTR 0.35 TCGA-62-8398-01 20 61869945 61869945 G A BIRC7 Missense_Mutation p.A186T 0.29 tolerated(0.53) benign(0.007) TCGA-62-8398-01 21 10862787 10862787 C T IGHV1OR21-1 Missense_Mutation p.A28V 0.11 deleterious(0.01) probably_damaging(0.981) TCGA-62-8398-01 21 43231161 43231161 C - PRDM15 Frame_Shift_Del p.K1175Rfs*32 0.23 TCGA-62-8398-01 22 19754234 19754234 C T TBX1 Silent p.H444H 0.09 TCGA-62-8398-01 22 23465660 23465660 G A GNAZ 3'UTR 0.25 TCGA-62-8398-01 22 26702022 26702022 A G SEZ6L Missense_Mutation p.S476G 0.43 deleterious(0.03) benign(0.012) TCGA-62-8398-01 2 108487766 108487766 A G RGPD4 Silent p.R1102R 0.08 TCGA-62-8398-01 2 125547691 125547691 C T CNTNAP5 Missense_Mutation p.P988S 0.28 deleterious(0.01) possibly_damaging(0.721) TCGA-62-8398-01 2 135107382 135107382 G T MGAT5 Missense_Mutation p.M373I 0.22 tolerated(0.25) benign(0.084) TCGA-62-8398-01 2 136026550 136026550 C T ZRANB3 Nonsense_Mutation p.W456* 0.19 TCGA-62-8398-01 2 150061822 150061822 G C LYPD6B Missense_Mutation p.A45P 0.14 possibly_damaging(0.838) TCGA-62-8398-01 2 230223348 230223348 G T DNER Missense_Mutation p.P708T 0.26 deleterious(0) probably_damaging(0.985) TCGA-62-8398-01 2 25851037 25851037 A C DTNB Intron 0.33 TCGA-62-8398-01 2 88383887 88383887 C G SMYD1 Missense_Mutation p.R64G 0.34 deleterious(0) possibly_damaging(0.758) TCGA-62-8398-01 3 134329159 134329159 C T KY Silent p.Q259Q 0.47 TCGA-62-8398-01 3 151094618 151094618 T G MED12L Missense_Mutation p.W1327G 0.60 deleterious(0.05) probably_damaging(0.972) TCGA-62-8398-01 4 44626719 44626719 C T YIPF7 Missense_Mutation p.M193I 0.30 deleterious(0) possibly_damaging(0.783) TCGA-62-8398-01 4 87643528 87643528 A G PTPN13 Missense_Mutation p.T517A 0.07 deleterious_low_confidence(0.01) benign(0.011) TCGA-62-8398-01 5 13692178 13692178 T C DNAH5 Missense_Mutation p.Y4597C 0.51 probably_damaging(0.926) TCGA-62-8398-01 5 140476230 140476230 T G PCDHB2 Missense_Mutation p.V619G 0.28 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-62-8398-01 5 149360470 149360470 A T SLC26A2 Silent p.A438A 0.25 TCGA-62-8398-01 5 15937193 15937193 G A FBXL7 Silent p.T458T 0.20 TCGA-62-8398-01 5 23527759 23527759 C A PRDM9 Missense_Mutation p.H854Q 0.47 deleterious(0) probably_damaging(0.997) TCGA-62-8398-01 5 24498520 24498520 G A CDH10 Missense_Mutation p.A501V 0.47 tolerated(0.06) possibly_damaging(0.482) TCGA-62-8398-01 6 117244340 117244340 G T RFX6 Missense_Mutation p.G503V 0.49 deleterious(0) probably_damaging(0.987) TCGA-62-8398-01 6 25921590 25921590 G T SLC17A2 Silent p.S97S 0.46 TCGA-62-8398-01 6 33408524 33408524 G C SYNGAP1 Silent p.L565L 0.52 TCGA-62-8398-01 7 111462514 111462514 T G DOCK4 Splice_Site p.X946_splice 0.52 TCGA-62-8398-01 7 112724302 112724302 C A GPR85 Missense_Mutation p.D159Y 0.29 deleterious(0.01) possibly_damaging(0.895) TCGA-62-8398-01 8 11177416 11177416 T G MTMR9 Intron 0.23 TCGA-62-8398-01 8 133650267 133650267 G A LRRC6 Silent p.L115L 0.28 TCGA-62-8398-01 8 15998435 15998435 G A MSR1 Intron 0.27 TCGA-62-8398-01 8 36766880 36766880 G T KCNU1 Missense_Mutation p.V720L 0.21 tolerated(0.36) possibly_damaging(0.635) TCGA-62-8398-01 8 37794537 37794537 A T GOT1L1 Silent p.I186I 0.31 TCGA-62-8398-01 9 135202730 135202730 A C SETX Missense_Mutation p.S1419A 0.44 tolerated(0.25) benign(0.045) TCGA-62-8398-01 9 72459539 72459539 C T C9orf135 Missense_Mutation p.P87S 0.56 tolerated(0.37) benign(0.426) TCGA-62-8398-01 X 135432477 135432477 T G GPR112 Missense_Mutation p.F2204L 0.73 tolerated(0.09) benign(0) TCGA-62-8398-01 X 1407692 1407692 C G CSF2RA Missense_Mutation p.I128M 0.58 deleterious(0.03) probably_damaging(0.942) TCGA-62-8398-01 X 55287043 55287043 C A PAGE3 Silent p.G81G 0.58 TCGA-62-8399-01 10 102584721 102584721 C A PAX2 Intron 0.46 TCGA-62-8399-01 10 102748096 102748096 G A C10orf2 Silent p.E43E 0.22 TCGA-62-8399-01 10 103898882 103898882 C G PPRC1 Missense_Mutation p.S206C 0.23 tolerated(0.06) benign(0.39) TCGA-62-8399-01 10 106937772 106937772 G T SORCS3 Intron 0.36 TCGA-62-8399-01 10 11505333 11505334 - C USP6NL Frame_Shift_Ins p.P549Afs*9 0.09 TCGA-62-8399-01 10 115612494 115612494 G A DCLRE1A Missense_Mutation p.R150C 0.15 tolerated(0.2) benign(0.018) TCGA-62-8399-01 10 121551134 121551134 G T INPP5F Missense_Mutation p.V141L 0.46 tolerated(0.12) possibly_damaging(0.77) TCGA-62-8399-01 10 125526498 125526498 T G CPXM2 Missense_Mutation p.E490D 0.12 tolerated(0.08) possibly_damaging(0.472) TCGA-62-8399-01 10 32322773 32322773 C G KIF5B Missense_Mutation p.K435N 0.43 deleterious(0) possibly_damaging(0.454) TCGA-62-8399-01 10 34573101 34573101 T G PARD3 Silent p.S1049S 0.49 TCGA-62-8399-01 10 50122166 50122166 T G LRRC18 Missense_Mutation p.K12T 0.08 tolerated(0.07) possibly_damaging(0.879) TCGA-62-8399-01 10 60588535 60588535 C T BICC1 Nonsense_Mutation p.R937* 0.48 TCGA-62-8399-01 10 73537565 73537565 G T C10orf54 5'Flank 0.43 TCGA-62-8399-01 10 7605141 7605141 C T ITIH5 Missense_Mutation p.A912T 0.19 tolerated(0.08) possibly_damaging(0.883) TCGA-62-8399-01 10 85992336 85992336 G C LRIT1 Missense_Mutation p.L407V 0.54 tolerated(0.3) benign(0.045) TCGA-62-8399-01 11 103018580 103018580 G C DYNC2H1 Missense_Mutation p.D928H 0.30 probably_damaging(0.964) TCGA-62-8399-01 11 113269860 113269860 G A ANKK1 Missense_Mutation p.C390Y 0.21 deleterious(0.03) probably_damaging(0.986) TCGA-62-8399-01 11 113661633 113661633 C T ATF4P4 RNA 0.62 TCGA-62-8399-01 11 117352740 117352740 G A DSCAML1 Missense_Mutation p.R893C 0.08 tolerated(0.06) probably_damaging(0.975) TCGA-62-8399-01 11 119029292 119029292 C G ABCG4 Missense_Mutation p.S398C 0.14 deleterious(0.03) benign(0.179) TCGA-62-8399-01 11 119549168 119549168 G A PVRL1 Silent p.F129F 0.19 TCGA-62-8399-01 11 122667726 122667726 C G UBASH3B Missense_Mutation p.Q448E 0.18 deleterious(0) probably_damaging(0.998) TCGA-62-8399-01 11 123847694 123847694 G A OR10S1 Silent p.I235I 0.17 TCGA-62-8399-01 11 124413090 124413090 C A OR8B12 Missense_Mutation p.G154V 0.64 deleterious_low_confidence(0.01) benign(0.414) TCGA-62-8399-01 11 125221210 125221210 A G PKNOX2 Silent p.Q3Q 0.19 TCGA-62-8399-01 11 126333080 126333080 C A KIRREL3 Missense_Mutation p.K238N 0.62 deleterious(0) probably_damaging(0.991) TCGA-62-8399-01 11 133712379 133712379 C T SPATA19 Splice_Site p.X146_splice 0.21 TCGA-62-8399-01 11 15170756 15170756 C G INSC Silent p.S59S 0.10 TCGA-62-8399-01 11 18472599 18472599 G A LDHC Silent p.L308L 0.38 TCGA-62-8399-01 11 20621080 20621080 G T SLC6A5 5'UTR 0.60 TCGA-62-8399-01 11 22747878 22747878 C T GAS2 Missense_Mutation p.P103L 0.56 deleterious(0.03) benign(0.063) TCGA-62-8399-01 11 31815013 31815013 G A PAX6 Silent p.F349F 0.40 TCGA-62-8399-01 11 36614535 36614535 C A RAG2 Missense_Mutation p.G395V 0.13 tolerated(0.24) probably_damaging(1) TCGA-62-8399-01 11 48142552 48142552 T A PTPRJ Intron 0.56 TCGA-62-8399-01 11 4870246 4870246 G A OR51S1 Missense_Mutation p.R65C 0.37 deleterious(0.01) benign(0.104) TCGA-62-8399-01 11 49168273 49168273 A G FOLH1 3'UTR 0.37 TCGA-62-8399-01 11 5013210 5013210 G C MMP26 Silent p.L204L 0.40 TCGA-62-8399-01 11 5255734 5255734 C A HBD 5'UTR 0.41 TCGA-62-8399-01 11 5443584 5443584 C T OR51Q1 Missense_Mutation p.R52C 0.36 tolerated(0.05) benign(0.006) TCGA-62-8399-01 11 5462025 5462025 G C OR51I1 Silent p.L240L 0.28 TCGA-62-8399-01 11 55135585 55135585 A G OR4A15 Missense_Mutation p.T76A 0.10 deleterious_low_confidence(0.01) benign(0.368) TCGA-62-8399-01 11 55135735 55135735 A G OR4A15 Missense_Mutation p.M126V 0.65 deleterious_low_confidence(0) benign(0.301) TCGA-62-8399-01 11 55136312 55136312 A G OR4A15 Missense_Mutation p.K318R 0.12 tolerated_low_confidence(1) benign(0.001) TCGA-62-8399-01 11 55861155 55861155 A T OR8I2 Silent p.I124I 0.61 TCGA-62-8399-01 11 56185077 56185077 G T OR5R1 Missense_Mutation p.S211Y 0.64 deleterious(0) probably_damaging(0.977) TCGA-62-8399-01 11 57982309 57982309 C T OR1S1 Silent p.F31F 0.39 TCGA-62-8399-01 11 60229781 60229781 C T MS4A1 5'UTR 0.14 TCGA-62-8399-01 11 63486520 63486520 A G RTN3 Silent p.K182K 0.45 TCGA-62-8399-01 11 64410131 64410131 C T NRXN2 Intron 0.19 TCGA-62-8399-01 11 67208510 67208510 C G CORO1B Intron 0.44 TCGA-62-8399-01 11 76982254 76982254 G T GDPD4 Nonsense_Mutation p.Y107* 0.59 TCGA-62-8399-01 11 77412087 77412087 C T RSF1 Silent p.Q729Q 0.41 TCGA-62-8399-01 11 78419498 78419498 C G TENM4 Missense_Mutation p.D1373H 0.22 tolerated(0.07) probably_damaging(0.991) TCGA-62-8399-01 11 7960287 7960287 G A OR10A3 Nonsense_Mutation p.Q261* 0.25 TCGA-62-8399-01 11 92616556 92616556 G C FAT3 Missense_Mutation p.E4312Q 0.34 benign(0.115) TCGA-62-8399-01 12 104054472 104054472 C T STAB2 Silent p.A600A 0.16 TCGA-62-8399-01 12 104138963 104138963 C A STAB2 Nonsense_Mutation p.S2015* 0.15 TCGA-62-8399-01 12 105420369 105420369 C T ALDH1L2 Silent p.A890A 0.22 TCGA-62-8399-01 12 107486641 107486641 G A CRY1 Silent p.C33C 0.19 TCGA-62-8399-01 12 109921434 109921434 G A UBE3B Silent p.Q26Q 0.24 TCGA-62-8399-01 12 11149851 11149851 C G TAS2R20 Missense_Mutation p.K208N 0.21 tolerated(0.19) benign(0.247) TCGA-62-8399-01 12 122392025 122392025 G C WDR66 Splice_Site p.X441_splice 0.13 TCGA-62-8399-01 12 124270370 124270370 G C DNAH10 Missense_Mutation p.W375C 0.19 probably_damaging(1) TCGA-62-8399-01 12 124417953 124417953 C A DNAH10 Missense_Mutation p.Q4340K 0.26 probably_damaging(1) TCGA-62-8399-01 12 125397132 125397132 C G UBC Missense_Mutation p.E396Q 0.28 tolerated(0.05) possibly_damaging(0.663) TCGA-62-8399-01 12 12940506 12940506 C G APOLD1 Missense_Mutation p.R254G 0.30 deleterious_low_confidence(0) benign(0.199) TCGA-62-8399-01 12 129559126 129559126 T C TMEM132D Missense_Mutation p.K865R 0.16 tolerated(0.51) benign(0.007) TCGA-62-8399-01 12 130648391 130648391 G C FZD10 Missense_Mutation p.E302Q 0.26 tolerated(0.11) probably_damaging(0.998) TCGA-62-8399-01 12 132636145 132636145 G T NOC4L Missense_Mutation p.R397L 0.28 deleterious(0) probably_damaging(1) TCGA-62-8399-01 12 133226011 133226011 C T POLE Missense_Mutation p.E1296K 0.25 tolerated(0.51) benign(0.002) TCGA-62-8399-01 12 133233726 133233726 C G POLE Missense_Mutation p.R1193T 0.27 tolerated(0.49) benign(0.007) TCGA-62-8399-01 12 14577507 14577507 A CT ATF7IP Frame_Shift_Ins p.I220Lfs*4 0.34 TCGA-62-8399-01 12 14959158 14959158 C G SMCO3 Missense_Mutation p.A153P 0.19 deleterious(0.02) possibly_damaging(0.603) TCGA-62-8399-01 12 26812073 26812073 C A ITPR2 Missense_Mutation p.S620I 0.48 deleterious(0.01) benign(0.075) TCGA-62-8399-01 12 2983578 2983578 C T FOXM1 Missense_Mutation p.A23T 0.23 deleterious(0.02) possibly_damaging(0.575) TCGA-62-8399-01 12 31242827 31242827 G C DDX11 Missense_Mutation p.K296N 0.14 tolerated(0.06) possibly_damaging(0.735) TCGA-62-8399-01 12 33559842 33559842 T C SYT10 Missense_Mutation p.D320G 0.09 deleterious(0) probably_damaging(1) TCGA-62-8399-01 12 40715938 40715938 C T LRRK2 Missense_Mutation p.H1758Y 0.26 deleterious(0.01) benign(0.081) TCGA-62-8399-01 12 49938099 49938099 G A KCNH3 Missense_Mutation p.A375T 0.30 deleterious(0) probably_damaging(1) TCGA-62-8399-01 12 52715051 52715051 G A KRT83 Silent p.C23C 0.28 TCGA-62-8399-01 12 52865455 52865455 C A KRT6C Splice_Site p.X272_splice 0.15 TCGA-62-8399-01 12 52865456 52865456 C A KRT6C Missense_Mutation p.K272N 0.15 deleterious(0) probably_damaging(1) TCGA-62-8399-01 12 53044263 53044263 G T KRT2 Silent p.T220T 0.31 TCGA-62-8399-01 12 55886384 55886384 T A OR6C68 Missense_Mutation p.C75S 0.27 deleterious_low_confidence(0.04) benign(0.41) TCGA-62-8399-01 12 58164900 58164900 C A METTL1 Missense_Mutation p.G84V 0.34 deleterious(0) probably_damaging(1) TCGA-62-8399-01 12 70964822 70964822 G A PTPRB Silent p.F1118F 0.25 TCGA-62-8399-01 12 88379709 88379709 A C C12orf50 Missense_Mutation p.N348K 0.26 deleterious(0) possibly_damaging(0.506) TCGA-62-8399-01 12 970201 970201 A T WNK1 Missense_Mutation p.E548V 0.55 deleterious(0) unknown(0) TCGA-62-8399-01 12 97158966 97158966 C G C12orf55 Missense_Mutation p.L2751V 0.26 deleterious(0) benign(0.094) TCGA-62-8399-01 12 99548225 99548225 G T ANKS1B Intron 0.25 TCGA-62-8399-01 13 25362140 25362140 G T RNF17 Missense_Mutation p.C209F 0.35 tolerated(0.74) probably_damaging(0.962) TCGA-62-8399-01 13 26273388 26273388 C T ATP8A2 Silent p.I763I 0.29 TCGA-62-8399-01 13 35685020 35685020 G C NBEA Missense_Mutation p.R636T 0.32 deleterious(0) probably_damaging(0.998) TCGA-62-8399-01 13 36049797 36049797 A G MAB21L1 Missense_Mutation p.L160P 0.19 deleterious(0) probably_damaging(0.992) TCGA-62-8399-01 13 52548952 52548952 G C ATP7B Nonsense_Mutation p.S135* 0.06 TCGA-62-8399-01 13 77724985 77724985 C T MYCBP2 Missense_Mutation p.A2301T 0.45 benign(0.037) TCGA-62-8399-01 14 100363631 100363631 G T EML1 Missense_Mutation p.C295F 0.27 deleterious(0) probably_damaging(0.981) TCGA-62-8399-01 14 100801282 100801282 C A WARS Missense_Mutation p.R449L 0.33 deleterious(0.01) probably_damaging(0.965) TCGA-62-8399-01 14 104056599 104056599 G A APOPT1 Silent p.Q199Q 0.24 TCGA-62-8399-01 14 104056611 104056611 G A APOPT1 Silent p.K203K 0.27 TCGA-62-8399-01 14 104056645 104056645 G C APOPT1 3'UTR 0.25 TCGA-62-8399-01 14 20216462 20216462 T C OR4Q3 Silent p.N292N 0.26 TCGA-62-8399-01 14 20345371 20345371 G T OR4K2 Nonstop_Mutation p.*315Yext*3 0.30 TCGA-62-8399-01 14 21423973 21423973 C T RNASE2 Silent p.L15L 0.30 TCGA-62-8399-01 14 21821695 21821695 C T SUPT16H Missense_Mutation p.E984K 0.21 deleterious(0) possibly_damaging(0.453) TCGA-62-8399-01 14 21821925 21821925 C G SUPT16H Missense_Mutation p.D953H 0.24 deleterious(0.03) benign(0.326) TCGA-62-8399-01 14 21928313 21928313 G C RAB2B 3'UTR 0.24 TCGA-62-8399-01 14 22102429 22102429 C A OR10G2 Missense_Mutation p.L190F 0.31 deleterious(0) probably_damaging(1) TCGA-62-8399-01 14 22134212 22134212 G T OR4E2 Missense_Mutation p.V306F 0.19 deleterious(0.01) benign(0.004) TCGA-62-8399-01 14 22392777 22392777 C A TRAV14DV4 Silent p.S100S 0.24 TCGA-62-8399-01 14 22962453 22962453 T C TRAJ44 5'Flank 0.13 TCGA-62-8399-01 14 23842408 23842408 C A IL25 Silent p.V27V 0.32 TCGA-62-8399-01 14 23847650 23847650 C A CMTM5 Missense_Mutation p.F73L 0.33 tolerated(0.38) probably_damaging(0.911) TCGA-62-8399-01 14 24805493 24805493 G A RIPK3 Missense_Mutation p.S482L 0.28 tolerated(0.67) benign(0.001) TCGA-62-8399-01 14 26917151 26917151 T A NOVA1 3'UTR 0.31 TCGA-62-8399-01 14 37145590 37145590 C T PAX9 Missense_Mutation p.S320L 0.26 tolerated_low_confidence(0.07) benign(0.004) TCGA-62-8399-01 14 38060894 38060894 C T FOXA1 Silent p.G365G 0.44 TCGA-62-8399-01 14 45711386 45711386 G A MIS18BP1 Missense_Mutation p.L332F 0.13 tolerated(0.26) benign(0.044) TCGA-62-8399-01 14 47120371 47120371 A G RPL10L Missense_Mutation p.L190P 0.13 deleterious(0) probably_damaging(0.974) TCGA-62-8399-01 14 50587104 50587104 T C SOS2 Splice_Site p.X1127_splice 0.15 TCGA-62-8399-01 14 72054985 72054985 G T SIPA1L1 Silent p.L132L 0.24 TCGA-62-8399-01 14 73578328 73578328 G T RBM25 Missense_Mutation p.D704Y 0.22 possibly_damaging(0.861) TCGA-62-8399-01 14 90397947 90397947 G A EFCAB11 Silent p.F116F 0.20 TCGA-62-8399-01 14 94935680 94935680 G A SERPINA9 Silent p.S184S 0.16 TCGA-62-8399-01 14 95912420 95912420 C A SYNE3 Silent p.L486L 0.23 TCGA-62-8399-01 15 20666474 20666474 G T HERC2P3 RNA 0.37 TCGA-62-8399-01 15 22383254 22383254 C T OR4N4 Missense_Mutation p.P261L 0.32 deleterious(0.01) probably_damaging(0.969) TCGA-62-8399-01 15 23890044 23890044 G A MAGEL2 Missense_Mutation p.P346L 0.53 tolerated(0.05) benign(0.006) TCGA-62-8399-01 15 25423702 25423702 G T SNORD115-6 5'Flank 0.46 TCGA-62-8399-01 15 34018635 34018635 C T RYR3 Missense_Mutation p.R2321C 0.23 probably_damaging(0.994) TCGA-62-8399-01 15 34355380 34355380 C A CHRM5 Silent p.A154A 0.48 TCGA-62-8399-01 15 41136711 41136711 G C SPINT1 5'UTR 0.24 TCGA-62-8399-01 15 43638098 43638098 G T ADAL Nonsense_Mutation p.E158* 0.39 TCGA-62-8399-01 15 44106842 44106842 C A MFAP1 Missense_Mutation p.E158D 0.20 tolerated(0.18) benign(0.217) TCGA-62-8399-01 15 45007682 45007682 G A B2M Silent p.L43L 0.22 TCGA-62-8399-01 15 77228059 77228059 G T RCN2 Missense_Mutation p.R148M 0.45 deleterious(0.04) possibly_damaging(0.459) TCGA-62-8399-01 15 81592345 81592345 C A IL16 Missense_Mutation p.P893H 0.48 tolerated(0.1) benign(0.005) TCGA-62-8399-01 16 1388958 1388958 G T BAIAP3 Missense_Mutation p.G98W 0.17 deleterious(0.01) probably_damaging(0.966) TCGA-62-8399-01 16 18887446 18887446 C G SMG1 Silent p.G630G 0.08 TCGA-62-8399-01 16 28898774 28898774 T A ATP2A1 Nonsense_Mutation p.L220* 0.23 TCGA-62-8399-01 16 4934683 4934683 G C PPL Missense_Mutation p.L1325V 0.24 tolerated(0.15) probably_damaging(0.978) TCGA-62-8399-01 16 4934911 4934911 G A PPL Nonsense_Mutation p.Q1249* 0.32 TCGA-62-8399-01 16 5110325 5110325 C G C16orf89 Missense_Mutation p.E157D 0.24 tolerated(0.29) benign(0.112) TCGA-62-8399-01 16 51174423 51174423 G A SALL1 Silent p.I570I 0.23 TCGA-62-8399-01 16 55897302 55897302 G C CES5A Missense_Mutation p.I285M 0.27 deleterious(0.01) probably_damaging(0.984) TCGA-62-8399-01 16 58621689 58621689 G A CNOT1 Nonsense_Mutation p.Q102* 0.22 TCGA-62-8399-01 16 67700154 67700154 C G ENKD1 Missense_Mutation p.E34Q 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-62-8399-01 16 69875930 69875930 C T WWP2 Missense_Mutation p.S161L 0.31 tolerated(0.2) benign(0) TCGA-62-8399-01 16 70599027 70599027 A T SF3B3 Silent p.A841A 0.31 TCGA-62-8399-01 16 70954753 70954753 T C HYDIN Missense_Mutation p.K2509R 0.50 benign(0) TCGA-62-8399-01 16 71171160 71171160 G T HYDIN Missense_Mutation p.L313M 0.71 probably_damaging(0.986) TCGA-62-8399-01 16 79632692 79632692 C T MAF Missense_Mutation p.E370K 0.21 deleterious(0) possibly_damaging(0.815) TCGA-62-8399-01 16 81934384 81934384 A T PLCG2 Missense_Mutation p.K454M 0.33 deleterious(0) possibly_damaging(0.544) TCGA-62-8399-01 16 83711945 83711945 G A CDH13 Missense_Mutation p.E520K 0.17 deleterious(0) probably_damaging(0.997) TCGA-62-8399-01 16 841226 841226 G T CHTF18 Missense_Mutation p.R320S 0.39 deleterious(0.04) benign(0.05) TCGA-62-8399-01 16 842221 842221 C A CHTF18 Intron 0.36 TCGA-62-8399-01 16 84690886 84690886 A G KLHL36 Missense_Mutation p.Y158C 0.55 deleterious(0) probably_damaging(0.984) TCGA-62-8399-01 16 8890052 8890052 C T TMEM186 Silent p.L133L 0.28 TCGA-62-8399-01 17 12666802 12666802 C A MYOCD Silent p.P934P 0.22 TCGA-62-8399-01 17 1563743 1563743 C G PRPF8 Missense_Mutation p.V1590L 0.02 deleterious(0.01) possibly_damaging(0.859) TCGA-62-8399-01 17 26696867 26696867 G A VTN Missense_Mutation p.R64C 0.28 deleterious(0) probably_damaging(1) TCGA-62-8399-01 17 26938788 26938788 C T SGK494 Missense_Mutation p.R240Q 0.25 tolerated(0.28) possibly_damaging(0.561) TCGA-62-8399-01 17 28651904 28651904 G A TMIGD1 Silent p.N190N 0.27 TCGA-62-8399-01 17 2966569 2966569 G C OR1D5 Missense_Mutation p.D111E 0.44 tolerated(0.09) probably_damaging(0.939) TCGA-62-8399-01 17 34340159 34340159 T A CCL23 3'UTR 0.36 TCGA-62-8399-01 17 39578596 39578596 C - KRT37 Frame_Shift_Del p.E275Rfs*49 0.36 TCGA-62-8399-01 17 42978433 42978433 G A CCDC103 Missense_Mutation p.D23N 0.25 deleterious(0) probably_damaging(1) TCGA-62-8399-01 17 46674007 46674007 C A HOXB6 Missense_Mutation p.R148L 0.20 deleterious(0) probably_damaging(1) TCGA-62-8399-01 17 48917817 48917817 G A WFIKKN2 Missense_Mutation p.A390T 0.22 tolerated(0.12) benign(0.036) TCGA-62-8399-01 17 5392813 5392813 C G MIS12 3'UTR 0.17 TCGA-62-8399-01 17 67521065 67521065 C G MAP2K6 Silent p.L229L 0.18 TCGA-62-8399-01 17 74072914 74072914 T C GALR2 Missense_Mutation p.I189T 0.37 tolerated(0.28) benign(0.01) TCGA-62-8399-01 17 74921144 74921144 G T MGAT5B Missense_Mutation p.M385I 0.57 tolerated(0.15) benign(0.426) TCGA-62-8399-01 17 7576853 7576853 C A TP53 Missense_Mutation p.Q331H 0.54 tolerated(0.13) benign(0.052) TCGA-62-8399-01 18 14850265 14850265 G A ANKRD30B Missense_Mutation p.E1031K 0.19 tolerated(0.09) benign(0.133) TCGA-62-8399-01 18 19997444 19997444 G C CTAGE1 Missense_Mutation p.L111V 0.09 deleterious(0.01) possibly_damaging(0.582) TCGA-62-8399-01 18 25543433 25543433 A T CDH2 Missense_Mutation p.I801N 0.56 tolerated(0.09) possibly_damaging(0.632) TCGA-62-8399-01 18 43249421 43249421 C A SLC14A2 Silent p.S729S 0.42 TCGA-62-8399-01 18 45375052 45375052 T A SMAD2 Missense_Mutation p.Q264L 0.48 deleterious(0.04) benign(0.005) TCGA-62-8399-01 18 47389641 47389641 C A MYO5B Missense_Mutation p.Q1300H 0.45 deleterious(0.04) benign(0.396) TCGA-62-8399-01 18 47810776 47810776 C G CXXC1 Missense_Mutation p.D397H 0.18 deleterious(0) possibly_damaging(0.882) TCGA-62-8399-01 18 48248439 48248439 C A MAPK4 Missense_Mutation p.R275S 0.35 tolerated(0.53) probably_damaging(0.997) TCGA-62-8399-01 18 55359071 55359071 G A ATP8B1 Silent p.L396L 0.20 TCGA-62-8399-01 18 55359140 55359140 G A ATP8B1 Silent p.L373L 0.25 TCGA-62-8399-01 18 59780478 59780478 G C PIGN Missense_Mutation p.F441L 0.15 tolerated(0.73) benign(0.004) TCGA-62-8399-01 18 6138218 6138218 C A L3MBTL4 Missense_Mutation p.G392C 0.26 deleterious(0) probably_damaging(1) TCGA-62-8399-01 18 6943279 6943279 G A LAMA1 Silent p.I2989I 0.21 TCGA-62-8399-01 18 72247483 72247483 G A CNDP1 Missense_Mutation p.A429T 0.11 deleterious(0.02) possibly_damaging(0.825) TCGA-62-8399-01 18 736907 736907 G A YES1 Missense_Mutation p.R398W 0.16 deleterious(0) probably_damaging(0.99) TCGA-62-8399-01 18 76754442 76754442 C G SALL3 Missense_Mutation p.D817E 0.22 tolerated(0.11) benign(0.023) TCGA-62-8399-01 18 8783636 8783636 G C SOGA2 Missense_Mutation p.E176Q 0.32 deleterious(0) probably_damaging(0.997) TCGA-62-8399-01 18 9256560 9256560 A G ANKRD12 Missense_Mutation p.K1099E 0.20 deleterious(0) probably_damaging(0.935) TCGA-62-8399-01 19 10677786 10677786 C T CDKN2D Missense_Mutation p.G150E 0.38 tolerated(0.5) probably_damaging(0.957) TCGA-62-8399-01 19 14499618 14499618 G A CD97 Missense_Mutation p.E60K 0.20 tolerated(0.08) benign(0.282) TCGA-62-8399-01 19 14501801 14501801 G A CD97 Missense_Mutation p.E86K 0.17 tolerated(0.15) benign(0.066) TCGA-62-8399-01 19 16278976 16278976 G A CIB3 Silent p.L106L 0.60 TCGA-62-8399-01 19 17424908 17424908 C G DDA1 Missense_Mutation p.A27G 0.09 tolerated(0.23) benign(0.24) TCGA-62-8399-01 19 17516254 17516254 A T BST2 Missense_Mutation p.F44Y 0.36 tolerated(0.2) benign(0.017) TCGA-62-8399-01 19 17837133 17837133 G A MAP1S Missense_Mutation p.E314K 0.20 deleterious(0.02) possibly_damaging(0.555) TCGA-62-8399-01 19 17943723 17943723 G A JAK3 Missense_Mutation p.S789L 0.22 tolerated(0.19) benign(0.424) TCGA-62-8399-01 19 17985497 17985497 C T SLC5A5 Missense_Mutation p.S167L 0.14 deleterious(0.03) probably_damaging(1) TCGA-62-8399-01 19 19646177 19646177 G T YJEFN3 Missense_Mutation p.R154L 0.31 deleterious(0) possibly_damaging(0.559) TCGA-62-8399-01 19 19656625 19656625 G T CILP2 Nonsense_Mutation p.E1091* 0.35 TCGA-62-8399-01 19 23927995 23927995 C G ZNF681 Missense_Mutation p.E119D 0.13 tolerated(0.09) possibly_damaging(0.636) TCGA-62-8399-01 19 30934682 30934682 C A ZNF536 Silent p.P71P 0.45 TCGA-62-8399-01 19 30936450 30936450 G T ZNF536 Nonsense_Mutation p.E661* 0.21 TCGA-62-8399-01 19 31768521 31768521 C A TSHZ3 Missense_Mutation p.Q726H 0.21 deleterious(0) probably_damaging(0.997) TCGA-62-8399-01 19 32928113 32928113 C T DPY19L3 Missense_Mutation p.P155L 0.32 deleterious(0) probably_damaging(0.997) TCGA-62-8399-01 19 35250532 35250532 C T ZNF599 Missense_Mutation p.E392K 0.15 deleterious(0) probably_damaging(1) TCGA-62-8399-01 19 35827111 35827111 C G CD22 Missense_Mutation p.I195M 0.24 tolerated(0.09) benign(0.389) TCGA-62-8399-01 19 36214038 36214038 C A KMT2B Missense_Mutation p.S955Y 0.16 possibly_damaging(0.737) TCGA-62-8399-01 19 36334379 36334379 T A NPHS1 Nonsense_Mutation p.R777* 0.19 TCGA-62-8399-01 19 38964174 38964174 C A RYR1 Missense_Mutation p.P1308Q 0.47 possibly_damaging(0.905) TCGA-62-8399-01 19 39390680 39390680 G T NFKBIB Missense_Mutation p.G3V 0.55 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-62-8399-01 19 4311958 4311958 C T FSD1 Missense_Mutation p.R204W 0.38 deleterious(0) probably_damaging(0.925) TCGA-62-8399-01 19 43922651 43922651 G C TEX101 3'UTR 0.27 TCGA-62-8399-01 19 44030275 44030275 C T ETHE1 Intron 0.27 TCGA-62-8399-01 19 44222933 44222933 C G IRGC Missense_Mutation p.R75G 0.42 deleterious(0) probably_damaging(0.996) TCGA-62-8399-01 19 44469212 44469212 G T ZNF221 Missense_Mutation p.R64S 0.17 deleterious(0.02) possibly_damaging(0.85) TCGA-62-8399-01 19 46271640 46271641 - G SIX5 Frame_Shift_Ins p.A155Rfs*17 0.33 TCGA-62-8399-01 19 46393992 46393992 C A MYPOP Missense_Mutation p.E363D 0.33 tolerated_low_confidence(0.09) benign(0.003) TCGA-62-8399-01 19 49253951 49253951 C G FUT1 Missense_Mutation p.Q196H 0.24 deleterious(0) probably_damaging(0.999) TCGA-62-8399-01 19 49254139 49254139 C A FUT1 Nonsense_Mutation p.E134* 0.24 TCGA-62-8399-01 19 49261405 49261405 C A FGF21 Silent p.P186P 0.31 TCGA-62-8399-01 19 49484845 49484845 G A GYS1 Missense_Mutation p.R371W 0.22 deleterious(0) probably_damaging(0.998) TCGA-62-8399-01 19 49967389 49967389 G T ALDH16A1 Silent p.P400P 0.24 TCGA-62-8399-01 19 50760613 50760613 G T MYH14 Missense_Mutation p.G701V 0.32 tolerated(0.25) benign(0.008) TCGA-62-8399-01 19 51480647 51480647 T G KLK7 3'UTR 0.19 TCGA-62-8399-01 19 51503712 51503712 G T KLK8 Missense_Mutation p.N111K 0.31 tolerated(0.39) benign(0.004) TCGA-62-8399-01 19 51885780 51885780 G - LIM2 Frame_Shift_Del p.L115Yfs*77 0.29 TCGA-62-8399-01 19 51961487 51961487 G T SIGLEC8 Missense_Mutation p.P52H 0.28 deleterious(0) probably_damaging(0.993) TCGA-62-8399-01 19 52380549 52380549 C A ZNF577 Missense_Mutation p.S90I 0.22 tolerated(0.08) probably_damaging(0.979) TCGA-62-8399-01 19 53484215 53484215 G A ZNF702P RNA 0.33 TCGA-62-8399-01 19 53885016 53885016 T C ZNF525 Missense_Mutation p.M395T 0.28 tolerated(0.54) benign(0.013) TCGA-62-8399-01 19 53889677 53889677 G C ZNF525 3'Flank 0.23 TCGA-62-8399-01 19 55175213 55175213 G T LILRB4 Silent p.G24G 0.22 TCGA-62-8399-01 19 56935492 56935492 G A ZNF583 Missense_Mutation p.E489K 0.26 deleterious(0.03) probably_damaging(0.998) TCGA-62-8399-01 19 58118033 58118033 G A ZNF530 Silent p.E380E 0.17 TCGA-62-8399-01 19 58144669 58144669 G C ZNF211 5'UTR 0.31 TCGA-62-8399-01 19 58565249 58565249 C A ZSCAN1 Silent p.R353R 0.25 TCGA-62-8399-01 19 58596357 58596357 C A ZSCAN18 Missense_Mutation p.G466W 0.37 deleterious(0) probably_damaging(0.985) TCGA-62-8399-01 19 727622 727622 G T PALM Missense_Mutation p.G66V 0.58 tolerated(0.07) possibly_damaging(0.836) TCGA-62-8399-01 19 7992648 7992648 G A TIMM44 Missense_Mutation p.A378V 0.08 tolerated(0.39) benign(0.034) TCGA-62-8399-01 19 804148 804148 C G PTBP1 Missense_Mutation p.I76M 0.35 tolerated(0.06) possibly_damaging(0.728) TCGA-62-8399-01 19 8642305 8642305 C A MYO1F 5'UTR 0.33 TCGA-62-8399-01 19 9009282 9009282 C G MUC16 Missense_Mutation p.R13064T 0.21 possibly_damaging(0.65) TCGA-62-8399-01 1 100174429 100174429 C G FRRS1 3'UTR 0.11 TCGA-62-8399-01 1 103355111 103355111 G T COL11A1 Missense_Mutation p.P1455H 0.50 unknown(0) TCGA-62-8399-01 1 10659362 10659362 C T PEX14 Silent p.S79S 0.43 TCGA-62-8399-01 1 107599740 107599740 G T PRMT6 Missense_Mutation p.V135F 0.06 deleterious(0) probably_damaging(0.992) TCGA-62-8399-01 1 109777848 109777848 G T SARS Missense_Mutation p.S255I 0.45 tolerated(0.06) possibly_damaging(0.461) TCGA-62-8399-01 1 115323061 115323061 C T SIKE1 Silent p.Q56Q 0.14 TCGA-62-8399-01 1 115453118 115453118 G A SYCP1 Missense_Mutation p.R474K 0.33 tolerated(0.31) benign(0.032) TCGA-62-8399-01 1 117618900 117618900 C A TTF2 Silent p.T458T 0.47 TCGA-62-8399-01 1 119474343 119474343 G A TBX15 5'UTR 0.42 TCGA-62-8399-01 1 119964856 119964856 G T HSD3B2 Missense_Mutation p.K244N 0.16 deleterious(0.04) benign(0.11) TCGA-62-8399-01 1 120839776 120839776 G T FAM72B 5'UTR 0.15 TCGA-62-8399-01 1 14107720 14107720 C G PRDM2 Missense_Mutation p.L1144V 0.36 unknown(0) TCGA-62-8399-01 1 145367791 145367791 G A NBPF10 Missense_Mutation p.G3463R 0.20 probably_damaging(0.92) TCGA-62-8399-01 1 145367792 145367792 G T NBPF10 Missense_Mutation p.G3463V 0.19 probably_damaging(0.936) TCGA-62-8399-01 1 145509241 145509241 C T RBM8A 3'UTR 0.05 TCGA-62-8399-01 1 146758091 146758091 C T CHD1L Missense_Mutation p.P712L 0.39 tolerated(0.22) benign(0.001) TCGA-62-8399-01 1 150039821 150039821 G C VPS45 5'UTR 0.12 TCGA-62-8399-01 1 150131575 150131575 T C PLEKHO1 Missense_Mutation p.S363P 0.46 tolerated(0.14) possibly_damaging(0.488) TCGA-62-8399-01 1 150258955 150258955 C A C1orf51 Missense_Mutation p.H249Q 0.22 tolerated(0.13) possibly_damaging(0.905) TCGA-62-8399-01 1 150258956 150258956 C A C1orf51 Missense_Mutation p.L250I 0.22 tolerated(0.08) possibly_damaging(0.553) TCGA-62-8399-01 1 150551334 150551334 C G MCL1 Missense_Mutation p.E225Q 0.07 tolerated(0.27) benign(0.086) TCGA-62-8399-01 1 152080401 152080401 C A TCHH Silent p.L1764L 0.35 TCGA-62-8399-01 1 152191933 152191933 G A HRNR Silent p.S724S 0.07 TCGA-62-8399-01 1 152280194 152280194 C T FLG Missense_Mutation p.G2390R 0.12 probably_damaging(0.953) TCGA-62-8399-01 1 154131414 154131414 C G NUP210L 5'Flank 0.19 TCGA-62-8399-01 1 155740888 155740888 G A GON4L Silent p.N872N 0.08 TCGA-62-8399-01 1 155744857 155744857 C T GON4L Silent p.L762L 0.09 TCGA-62-8399-01 1 156618630 156618630 G A BCAN Missense_Mutation p.R347H 0.16 deleterious(0) probably_damaging(0.998) TCGA-62-8399-01 1 159035974 159035974 A C AIM2 Missense_Mutation p.V181G 0.06 deleterious(0) probably_damaging(0.99) TCGA-62-8399-01 1 159284048 159284048 T G OR10J3 Silent p.S134S 0.10 TCGA-62-8399-01 1 160722990 160722990 C T SLAMF7 3'UTR 0.05 TCGA-62-8399-01 1 168014234 168014234 C G DCAF6 Missense_Mutation p.S676C 0.19 deleterious_low_confidence(0.01) benign(0.428) TCGA-62-8399-01 1 168014354 168014354 C T DCAF6 Missense_Mutation p.S716L 0.28 tolerated_low_confidence(0.48) benign(0.001) TCGA-62-8399-01 1 169762216 169762216 C A METTL18 Missense_Mutation p.K207N 0.30 deleterious(0) probably_damaging(0.965) TCGA-62-8399-01 1 171509914 171509914 G T PRRC2C Missense_Mutation p.Q1101H 0.24 unknown(0) TCGA-62-8399-01 1 173517525 173517525 C T SLC9C2 Intron 0.17 TCGA-62-8399-01 1 175086232 175086232 G C TNN Missense_Mutation p.Q759H 0.17 deleterious(0.04) benign(0.012) TCGA-62-8399-01 1 175365730 175365730 G A TNR Missense_Mutation p.A397V 0.47 deleterious(0.03) possibly_damaging(0.79) TCGA-62-8399-01 1 175365914 175365914 C T TNR Missense_Mutation p.G336S 0.39 tolerated(0.28) possibly_damaging(0.79) TCGA-62-8399-01 1 17942575 17942575 C G ARHGEF10L Intron 0.08 TCGA-62-8399-01 1 179608977 179608977 C T TDRD5 Silent p.R508R 0.08 TCGA-62-8399-01 1 185278533 185278533 G T IVNS1ABP Missense_Mutation p.F31L 0.23 deleterious(0.02) possibly_damaging(0.823) TCGA-62-8399-01 1 190067013 190067013 G A BRINP3 3'UTR 0.40 TCGA-62-8399-01 1 196694367 196694367 G C CFH Missense_Mutation p.G605R 0.24 deleterious(0) probably_damaging(1) TCGA-62-8399-01 1 200816816 200816816 G C CAMSAP2 Missense_Mutation p.G414A 0.27 tolerated(0.06) probably_damaging(0.926) TCGA-62-8399-01 1 203194929 203194929 A T CHIT1 Missense_Mutation p.L42Q 0.17 deleterious(0.01) probably_damaging(0.968) TCGA-62-8399-01 1 203696702 203696702 A C ATP2B4 Intron 0.31 TCGA-62-8399-01 1 20517580 20517580 G T UBXN10 Missense_Mutation p.V176F 0.45 tolerated(0.05) benign(0.003) TCGA-62-8399-01 1 209933638 209933638 G A TRAF3IP3 Missense_Mutation p.R85K 0.27 tolerated(0.81) benign(0.002) TCGA-62-8399-01 1 215813997 215813997 C T USH2A Silent p.L4957L 0.13 TCGA-62-8399-01 1 216420067 216420067 G A USH2A Missense_Mutation p.T890I 0.32 possibly_damaging(0.493) TCGA-62-8399-01 1 223177746 223177746 A C DISP1 Missense_Mutation p.T1003P 0.33 deleterious(0) probably_damaging(0.997) TCGA-62-8399-01 1 224505445 224505445 C T NVL Missense_Mutation p.E79K 0.13 tolerated_low_confidence(0.06) probably_damaging(0.928) TCGA-62-8399-01 1 226075322 226075322 C T LEFTY1 Missense_Mutation p.E172K 0.14 deleterious(0.04) benign(0.005) TCGA-62-8399-01 1 228479859 228479859 A T OBSCN Missense_Mutation p.R3963W 0.23 probably_damaging(0.931) TCGA-62-8399-01 1 229661692 229661692 G C ABCB10 Missense_Mutation p.L633V 0.26 deleterious(0.03) possibly_damaging(0.771) TCGA-62-8399-01 1 235345665 235345665 T G ARID4B Missense_Mutation p.S857R 0.46 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-62-8399-01 1 235613563 235613563 C G B3GALNT2 Silent p.L487L 0.18 TCGA-62-8399-01 1 235850271 235850271 G T LYST Missense_Mutation p.T3593K 0.16 deleterious(0.03) benign(0.03) TCGA-62-8399-01 1 237947325 237947325 C G RYR2 Missense_Mutation p.L4105V 0.49 probably_damaging(0.998) TCGA-62-8399-01 1 238090247 238090247 G T RP11-193H5.1 RNA 0.24 TCGA-62-8399-01 1 240656711 240656711 C T GREM2 Missense_Mutation p.R22Q 0.17 tolerated(0.25) benign(0.042) TCGA-62-8399-01 1 243708818 243708818 A G AKT3 Silent p.D415D 0.23 TCGA-62-8399-01 1 247614894 247614894 A T OR2B11 Missense_Mutation p.C131S 0.40 deleterious(0) probably_damaging(0.977) TCGA-62-8399-01 1 248004380 248004380 G T OR11L1 Silent p.I273I 0.15 TCGA-62-8399-01 1 248263133 248263133 C A OR2L13 Silent p.S152S 0.19 TCGA-62-8399-01 1 248652045 248652045 G C OR2T5 Silent p.L52L 0.11 TCGA-62-8399-01 1 248722637 248722637 C G OR2T29 Silent p.L52L 0.12 TCGA-62-8399-01 1 26517184 26517184 C A CATSPER4 Silent p.G22G 0.40 TCGA-62-8399-01 1 36752630 36752630 C A THRAP3 Missense_Mutation p.P267T 0.36 tolerated(0.12) probably_damaging(0.991) TCGA-62-8399-01 1 39782975 39782975 G C MACF1 Missense_Mutation p.M1231I 0.22 benign(0.007) TCGA-62-8399-01 1 40148381 40148381 C T HPCAL4 Missense_Mutation p.V135M 0.15 tolerated(0.3) probably_damaging(0.995) TCGA-62-8399-01 1 43887757 43887757 C G SZT2 Missense_Mutation p.L544V 0.07 tolerated(0.28) probably_damaging(0.943) TCGA-62-8399-01 1 44423693 44423693 A G IPO13 Missense_Mutation p.S529G 0.39 tolerated(0.62) benign(0.001) TCGA-62-8399-01 1 4715466 4715466 C G AJAP1 5'UTR 0.42 TCGA-62-8399-01 1 55562208 55562208 G A USP24 Silent p.C2008C 0.35 TCGA-62-8399-01 1 57140146 57140146 C T PRKAA2 Nonsense_Mutation p.R63* 0.38 TCGA-62-8399-01 1 66102548 66102548 C A LEPR Silent p.L1116L 0.50 TCGA-62-8399-01 1 67560954 67560954 G A C1orf141 Silent p.V189V 0.57 TCGA-62-8399-01 1 71512937 71512937 C A PTGER3 Silent p.P108P 0.18 TCGA-62-8399-01 1 76262705 76262705 C G MSH4 Missense_Mutation p.S12C 0.21 tolerated_low_confidence(0.23) possibly_damaging(0.541) TCGA-62-8399-01 1 76397847 76397847 C G ASB17 Missense_Mutation p.E44Q 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.832) TCGA-62-8399-01 1 84610202 84610202 C G PRKACB Missense_Mutation p.S53C 0.43 deleterious(0.01) possibly_damaging(0.634) TCGA-62-8399-01 1 85112994 85112994 C A SSX2IP 3'UTR 0.32 TCGA-62-8399-01 1 90180521 90180521 G A LRRC8C Missense_Mutation p.E798K 0.12 deleterious(0.03) benign(0.058) TCGA-62-8399-01 20 25656807 25656807 C T ZNF337 Missense_Mutation p.E373K 0.32 deleterious(0.02) possibly_damaging(0.768) TCGA-62-8399-01 20 32256097 32256097 G C ACTL10 3'UTR 0.20 TCGA-62-8399-01 20 33867762 33867762 G C EIF6 Missense_Mutation p.L177V 0.36 deleterious(0.05) possibly_damaging(0.86) TCGA-62-8399-01 20 35526319 35526319 C G SAMHD1 Missense_Mutation p.R551P 0.05 deleterious(0) probably_damaging(0.977) TCGA-62-8399-01 20 3891395 3891395 C T PANK2 Silent p.L385L 0.20 TCGA-62-8399-01 20 40033717 40033717 G C CHD6 Nonsense_Mutation p.S2555* 0.17 TCGA-62-8399-01 20 43384709 43384709 C A RIMS4 3'UTR 0.31 TCGA-62-8399-01 20 47296264 47296264 C A PREX1 Missense_Mutation p.E488D 0.32 deleterious(0) probably_damaging(0.957) TCGA-62-8399-01 20 4837625 4837625 G A SLC23A2 Missense_Mutation p.T649M 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.535) TCGA-62-8399-01 20 50700983 50700983 G A ZFP64 3'UTR 0.40 TCGA-62-8399-01 20 50700985 50700985 C T ZFP64 3'UTR 0.40 TCGA-62-8399-01 20 60584122 60584122 C A TAF4 Missense_Mutation p.V624L 0.22 probably_damaging(0.984) TCGA-62-8399-01 20 6093212 6093212 C A FERMT1 Missense_Mutation p.K148N 0.44 deleterious(0.04) probably_damaging(0.978) TCGA-62-8399-01 20 61341214 61341214 G T NTSR1 Missense_Mutation p.A219S 0.24 deleterious(0.02) benign(0.086) TCGA-62-8399-01 20 62203656 62203656 C G HELZ2 Missense_Mutation p.R28P 0.18 tolerated(0.3) benign(0.004) TCGA-62-8399-01 20 9371238 9371238 G A PLCB4 Silent p.L433L 0.40 TCGA-62-8399-01 21 10862876 10862876 C A IGHV1OR21-1 Missense_Mutation p.Q58K 0.03 deleterious(0.01) probably_damaging(0.992) TCGA-62-8399-01 21 22849741 22849741 G C NCAM2 Missense_Mutation p.E676Q 0.28 tolerated(0.33) probably_damaging(0.999) TCGA-62-8399-01 21 28337882 28337882 C - ADAMTS5 Frame_Shift_Del p.A277Rfs*16 0.17 TCGA-62-8399-01 21 31744268 31744268 G A KRTAP13-2 Silent p.L88L 0.21 TCGA-62-8399-01 21 32582528 32582528 C A TIAM1 Nonsense_Mutation p.E741* 0.24 TCGA-62-8399-01 21 34051075 34051075 G C SYNJ1 Missense_Mutation p.Q503E 0.25 deleterious(0) probably_damaging(0.998) TCGA-62-8399-01 21 34072277 34072277 G C SYNJ1 Nonsense_Mutation p.S156* 0.15 TCGA-62-8399-01 21 35890510 35890510 C T RCAN1 Missense_Mutation p.V211M 0.19 deleterious(0) probably_damaging(0.978) TCGA-62-8399-01 21 37571434 37571435 CA T DOPEY2 Frame_Shift_Del p.Q69Cfs*13 0.21 TCGA-62-8399-01 21 39671979 39671979 G T KCNJ15 Missense_Mutation p.D266Y 0.27 deleterious(0.02) probably_damaging(0.979) TCGA-62-8399-01 21 43298876 43298876 C G PRDM15 Missense_Mutation p.R114P 0.32 tolerated_low_confidence(0.12) benign(0) TCGA-62-8399-01 21 43862660 43862660 C A UBASH3A Missense_Mutation p.L529M 0.29 tolerated(0.19) possibly_damaging(0.639) TCGA-62-8399-01 21 45479081 45479081 A T TRAPPC10 Missense_Mutation p.N259I 0.17 deleterious(0) probably_damaging(1) TCGA-62-8399-01 21 46047861 46047861 A T KRTAP10-9 Missense_Mutation p.Q258L 0.30 deleterious(0) benign(0.227) TCGA-62-8399-01 21 47532404 47532404 C G COL6A2 Missense_Mutation p.H209Q 0.29 tolerated(0.29) benign(0.01) TCGA-62-8399-01 21 47552452 47552452 C T COL6A2 Missense_Mutation p.R1016C 0.31 deleterious(0) probably_damaging(0.997) TCGA-62-8399-01 21 47684047 47684047 C T MCM3AP Missense_Mutation p.A1107T 0.24 tolerated(0.2) benign(0.003) TCGA-62-8399-01 22 20457080 20457080 G T RIMBP3 Missense_Mutation p.Q1408K 0.30 tolerated(0.2) benign(0.01) TCGA-62-8399-01 22 24431960 24431960 C G CABIN1 5'UTR 0.10 TCGA-62-8399-01 22 26099489 26099489 C G ADRBK2 Missense_Mutation p.F391L 0.23 deleterious(0) probably_damaging(0.957) TCGA-62-8399-01 22 26164743 26164743 C A MYO18B Missense_Mutation p.A287E 0.23 tolerated_low_confidence(0.1) benign(0.001) TCGA-62-8399-01 22 26306940 26306940 C A MYO18B Missense_Mutation p.Q1763K 0.27 deleterious(0) probably_damaging(0.999) TCGA-62-8399-01 22 29755848 29755848 C T AP1B1 Missense_Mutation p.D82N 0.09 deleterious(0) possibly_damaging(0.691) TCGA-62-8399-01 22 30977610 30977610 T A PES1 Missense_Mutation p.R218W 0.38 deleterious(0) probably_damaging(0.995) TCGA-62-8399-01 22 35723360 35723360 G T TOM1 Missense_Mutation p.A249S 0.40 tolerated(1) benign(0.01) TCGA-62-8399-01 22 38120071 38120071 C T TRIOBP Missense_Mutation p.S503F 0.11 tolerated_low_confidence(0.07) unknown(0) TCGA-62-8399-01 22 39138464 39138464 G A SUN2 Missense_Mutation p.R325W 0.07 deleterious(0) probably_damaging(1) TCGA-62-8399-01 22 40417510 40417510 C A FAM83F Silent p.G332G 0.23 TCGA-62-8399-01 22 40417511 40417511 T A FAM83F Missense_Mutation p.C333S 0.23 tolerated(1) benign(0) TCGA-62-8399-01 22 42144143 42144143 G C MEI1 Missense_Mutation p.L571F 0.34 deleterious(0.01) possibly_damaging(0.79) TCGA-62-8399-01 22 47189537 47189537 G C TBC1D22A Missense_Mutation p.E87Q 0.33 tolerated(0.64) benign(0.011) TCGA-62-8399-01 2 10132275 10132275 G A GRHL1 Splice_Site p.X487_splice 0.21 TCGA-62-8399-01 2 10187792 10187792 C T KLF11 Nonsense_Mutation p.Q110* 0.16 TCGA-62-8399-01 2 103335273 103335273 C A MFSD9 Missense_Mutation p.R344L 0.19 deleterious(0) possibly_damaging(0.642) TCGA-62-8399-01 2 132285746 132285746 T C CCDC74A Missense_Mutation p.L68P 0.13 deleterious(0) probably_damaging(0.999) TCGA-62-8399-01 2 133541888 133541888 A G NCKAP5 Silent p.T832T 0.25 TCGA-62-8399-01 2 133541889 133541889 G A NCKAP5 Missense_Mutation p.T832I 0.26 tolerated(0.07) possibly_damaging(0.782) TCGA-62-8399-01 2 133636484 133636484 C G NCKAP5 Missense_Mutation p.E195D 0.17 deleterious(0) possibly_damaging(0.597) TCGA-62-8399-01 2 137814159 137814159 C G THSD7B Silent p.L103L 0.31 TCGA-62-8399-01 2 1481040 1481040 G T TPO Silent p.P334P 0.47 TCGA-62-8399-01 2 148674930 148674930 G C ACVR2A Missense_Mutation p.G251R 0.33 deleterious(0) probably_damaging(1) TCGA-62-8399-01 2 152315377 152315377 G C RIF1 Missense_Mutation p.E970Q 0.30 tolerated(0.06) benign(0.391) TCGA-62-8399-01 2 152426864 152426864 C A NEB Missense_Mutation p.V5721L 0.27 possibly_damaging(0.784) TCGA-62-8399-01 2 152544853 152544853 C A NEB Missense_Mutation p.A790S 0.23 benign(0.146) TCGA-62-8399-01 2 155555596 155555596 G T KCNJ3 Missense_Mutation p.W103C 0.26 deleterious(0) probably_damaging(0.999) TCGA-62-8399-01 2 168102367 168102367 C A XIRP2 Missense_Mutation p.Q1489K 0.24 possibly_damaging(0.557) TCGA-62-8399-01 2 173339729 173339729 C T ITGA6 Silent p.V353V 0.25 TCGA-62-8399-01 2 173352023 173352023 G C ITGA6 Missense_Mutation p.D668H 0.15 deleterious(0.03) probably_damaging(0.952) TCGA-62-8399-01 2 179419772 179419772 T C TTN Missense_Mutation p.I29472V 0.20 TCGA-62-8399-01 2 179504834 179504834 G A TTN Missense_Mutation p.P13576L 0.21 TCGA-62-8399-01 2 18113308 18113308 G T KCNS3 Missense_Mutation p.V345L 0.29 deleterious(0.02) possibly_damaging(0.74) TCGA-62-8399-01 2 182347354 182347355 - T ITGA4 Frame_Shift_Ins p.V341Cfs*22 0.21 TCGA-62-8399-01 2 189864205 189864205 G T COL3A1 Missense_Mutation p.G711C 0.28 unknown(0) TCGA-62-8399-01 2 189917494 189917494 C T COL5A2 Missense_Mutation p.R899Q 0.29 unknown(0) TCGA-62-8399-01 2 190617612 190617612 G A OSGEPL1 Missense_Mutation p.P353S 0.22 tolerated(0.1) possibly_damaging(0.633) TCGA-62-8399-01 2 1914083 1914083 C A MYT1L Silent p.L580L 0.14 TCGA-62-8399-01 2 192255115 192255115 G T MYO1B Missense_Mutation p.V627L 0.22 deleterious(0.04) benign(0.107) TCGA-62-8399-01 2 20871058 20871058 C T GDF7 Missense_Mutation p.A409V 0.24 deleterious(0) probably_damaging(0.984) TCGA-62-8399-01 2 208986369 208986369 A G CRYGD 3'UTR 0.22 TCGA-62-8399-01 2 219825656 219825656 G T CDK5R2 3'UTR 0.30 TCGA-62-8399-01 2 220136644 220136644 G A TUBA4B RNA 0.34 TCGA-62-8399-01 2 220246111 220246111 C T DNPEP Silent p.A395A 0.19 TCGA-62-8399-01 2 224849492 224849492 C A SERPINE2 Missense_Mutation p.K299N 0.27 tolerated(0.15) possibly_damaging(0.906) TCGA-62-8399-01 2 227662628 227662628 C A IRS1 Missense_Mutation p.C276F 0.24 deleterious(0) probably_damaging(0.982) TCGA-62-8399-01 2 233394818 233394818 G T CHRND Missense_Mutation p.M263I 0.20 deleterious(0.02) benign(0.403) TCGA-62-8399-01 2 234460097 234460097 C T USP40 Silent p.V266V 0.10 TCGA-62-8399-01 2 234460105 234460105 C T USP40 Missense_Mutation p.D264N 0.14 deleterious(0.03) probably_damaging(0.965) TCGA-62-8399-01 2 25179980 25179980 C T DNAJC27 Missense_Mutation p.E154K 0.15 tolerated(0.17) benign(0.141) TCGA-62-8399-01 2 26496567 26496567 C G HADHB Missense_Mutation p.I101M 0.24 deleterious(0) possibly_damaging(0.649) TCGA-62-8399-01 2 26739419 26739419 C T OTOF Missense_Mutation p.G126S 0.18 tolerated(0.19) benign(0.437) TCGA-62-8399-01 2 26950683 26950683 G T KCNK3 Missense_Mutation p.K144N 0.15 deleterious(0) probably_damaging(0.998) TCGA-62-8399-01 2 27359964 27359964 C A C2orf53 Missense_Mutation p.V412F 0.38 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-62-8399-01 2 29093099 29093099 C A TRMT61B Silent p.R15R 0.09 TCGA-62-8399-01 2 44050043 44050043 C G ABCG5 Missense_Mutation p.E452D 0.13 deleterious(0) probably_damaging(0.98) TCGA-62-8399-01 2 45233500 45233500 G C SIX2 Missense_Mutation p.P229A 0.11 deleterious(0.02) benign(0.014) TCGA-62-8399-01 2 45236244 45236244 G A SIX2 Silent p.S2S 0.67 TCGA-62-8399-01 2 50758541 50758541 C T NRXN1 Missense_Mutation p.S764N 0.18 deleterious(0.03) possibly_damaging(0.813) TCGA-62-8399-01 2 68544205 68544205 T G CNRIP1 Intron 0.07 TCGA-62-8399-01 2 70504027 70504027 C G PCYOX1 Missense_Mutation p.Q341E 0.21 tolerated(0.12) benign(0.02) TCGA-62-8399-01 2 85628669 85628669 G A CAPG Missense_Mutation p.R112W 0.15 deleterious(0.01) benign(0.446) TCGA-62-8399-01 2 86693692 86693692 G C KDM3A Missense_Mutation p.R402T 0.23 tolerated_low_confidence(0.67) benign(0) TCGA-62-8399-01 2 90044405 90044405 G T IGKV2D-24 Missense_Mutation p.G109V 0.17 deleterious(0.01) possibly_damaging(0.588) TCGA-62-8399-01 2 90229109 90229109 C T IGKV1D-42 Silent p.L15L 0.19 TCGA-62-8399-01 2 91843439 91843439 C T AC027612.6 RNA 0.23 TCGA-62-8399-01 2 9541496 9541496 G A ASAP2 Missense_Mutation p.V973M 0.33 deleterious(0) probably_damaging(0.986) TCGA-62-8399-01 2 97749470 97749470 T C FAHD2B 3'UTR 0.05 TCGA-62-8399-01 2 98986505 98986505 C A CNGA3 Silent p.R23R 0.08 TCGA-62-8399-01 3 107492238 107492238 G T BBX Missense_Mutation p.S557I 0.14 tolerated(0.08) benign(0.1) TCGA-62-8399-01 3 108100260 108100260 G T MYH15 3'UTR 0.50 TCGA-62-8399-01 3 114069802 114069802 A C ZBTB20 Missense_Mutation p.F375V 0.14 deleterious(0) possibly_damaging(0.879) TCGA-62-8399-01 3 121822390 121822390 C T CD86 Silent p.F32F 0.12 TCGA-62-8399-01 3 123419623 123419623 G A MYLK Nonsense_Mutation p.R898* 0.15 TCGA-62-8399-01 3 128182136 128182136 C A DNAJB8 5'UTR 0.60 TCGA-62-8399-01 3 128200114 128200114 G T GATA2 Missense_Mutation p.N397K 0.48 deleterious(0) probably_damaging(0.968) TCGA-62-8399-01 3 130285904 130285904 C A COL6A6 Silent p.G547G 0.41 TCGA-62-8399-01 3 133664099 133664099 G C SLCO2A1 Nonsense_Mutation p.S434* 0.50 TCGA-62-8399-01 3 141497041 141497041 G T GRK7 5'UTR 0.47 TCGA-62-8399-01 3 14207053 14207053 G A XPC Silent p.F218F 0.25 TCGA-62-8399-01 3 160137240 160137240 C T SMC4 Missense_Mutation p.S589L 0.33 deleterious(0) possibly_damaging(0.886) TCGA-62-8399-01 3 164737505 164737505 G T SI Nonsense_Mutation p.S1103* 0.37 TCGA-62-8399-01 3 167045769 167045769 C A ZBBX Missense_Mutation p.D275Y 0.34 deleterious(0.01) possibly_damaging(0.861) TCGA-62-8399-01 3 183602624 183602624 C A PARL Missense_Mutation p.R4L 0.21 deleterious_low_confidence(0.01) benign(0.056) TCGA-62-8399-01 3 3189270 3189270 G C TRNT1 Missense_Mutation p.L313F 0.23 deleterious(0) probably_damaging(0.925) TCGA-62-8399-01 3 44929214 44929214 T A TGM4 Missense_Mutation p.V76E 0.41 deleterious(0) probably_damaging(0.926) TCGA-62-8399-01 3 48462137 48462137 G C PLXNB1 Silent p.V655V 0.16 TCGA-62-8399-01 3 48602875 48602875 G T COL7A1 Missense_Mutation p.P2832H 0.18 probably_damaging(0.974) TCGA-62-8399-01 3 48663367 48663367 C G SLC26A6 3'UTR 0.14 TCGA-62-8399-01 3 50357383 50357383 C G HYAL2 Missense_Mutation p.E180Q 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-62-8399-01 3 71037196 71037196 C T FOXP1 Missense_Mutation p.M367I 0.30 deleterious(0) possibly_damaging(0.829) TCGA-62-8399-01 3 93617414 93617414 C A PROS1 Splice_Site p.X243_splice 0.38 TCGA-62-8399-01 4 100341786 100341786 G T ADH7 Silent p.P263P 0.23 TCGA-62-8399-01 4 119951365 119951365 G T SYNPO2 Missense_Mutation p.D479Y 0.34 deleterious(0) probably_damaging(0.968) TCGA-62-8399-01 4 122833067 122833067 G T TRPC3 Missense_Mutation p.T508K 0.27 deleterious(0) benign(0.059) TCGA-62-8399-01 4 123302238 123302238 G T ADAD1 Missense_Mutation p.M88I 0.19 tolerated(0.18) benign(0.001) TCGA-62-8399-01 4 128819695 128819695 G T PLK4 Nonstop_Mutation p.*971Lext*8 0.18 TCGA-62-8399-01 4 143033725 143033725 C G INPP4B Missense_Mutation p.G749A 0.32 deleterious(0) probably_damaging(1) TCGA-62-8399-01 4 155219444 155219444 C A DCHS2 Missense_Mutation p.V1553L 0.25 deleterious(0.03) possibly_damaging(0.746) TCGA-62-8399-01 4 16010677 16010677 C T PROM1 Missense_Mutation p.R399H 0.15 tolerated(0.14) benign(0.011) TCGA-62-8399-01 4 16504337 16504337 G T LDB2 Missense_Mutation p.P351T 0.22 deleterious(0.03) benign(0.206) TCGA-62-8399-01 4 183601753 183601753 G T TENM3 Missense_Mutation p.C566F 0.31 deleterious(0) possibly_damaging(0.831) TCGA-62-8399-01 4 187126445 187126445 A G CYP4V2 Missense_Mutation p.D360G 0.24 deleterious(0) probably_damaging(0.938) TCGA-62-8399-01 4 187455151 187455151 T C MTNR1A Missense_Mutation p.I249V 0.37 tolerated(1) benign(0.008) TCGA-62-8399-01 4 25005130 25005130 G A LGI2 Silent p.S527S 0.06 TCGA-62-8399-01 4 30921948 30921948 C A PCDH7 Silent p.T1116T 0.19 TCGA-62-8399-01 4 36230664 36230664 G C ARAP2 Missense_Mutation p.P149A 0.34 tolerated_low_confidence(0.73) benign(0.002) TCGA-62-8399-01 4 46053442 46053442 G T GABRG1 Nonsense_Mutation p.S377* 0.23 TCGA-62-8399-01 4 57796224 57796224 G A REST Silent p.K400K 0.28 TCGA-62-8399-01 4 5961254 5961254 C T C4orf50 Missense_Mutation p.G701R 0.29 tolerated(0.12) probably_damaging(0.975) TCGA-62-8399-01 4 69195743 69195743 G C YTHDC1 Silent p.V442V 0.20 TCGA-62-8399-01 4 80329050 80329050 T C GK2 Missense_Mutation p.K102R 0.24 tolerated(0.51) benign(0.021) TCGA-62-8399-01 4 88731901 88731901 C A IBSP Silent p.I130I 0.35 TCGA-62-8399-01 5 109155490 109155490 G A MAN2A1 Missense_Mutation p.G744R 0.10 tolerated(0.44) benign(0.016) TCGA-62-8399-01 5 127487026 127487026 C G SLC12A2 Missense_Mutation p.A734G 0.27 deleterious(0) possibly_damaging(0.902) TCGA-62-8399-01 5 127728833 127728833 C A FBN2 Missense_Mutation p.G487V 0.44 tolerated(0.05) benign(0.144) TCGA-62-8399-01 5 13811833 13811833 C G DNAH5 Missense_Mutation p.E2444Q 0.12 benign(0.005) TCGA-62-8399-01 5 13820573 13820573 C A DNAH5 Missense_Mutation p.W2241C 0.59 possibly_damaging(0.759) TCGA-62-8399-01 5 138651794 138651794 C T MATR3 Missense_Mutation p.T349I 0.49 tolerated(0.07) probably_damaging(0.986) TCGA-62-8399-01 5 140502298 140502298 G A PCDHB4 Missense_Mutation p.E240K 0.13 deleterious(0.05) benign(0.41) TCGA-62-8399-01 5 140784213 140784213 C G PCDHGA9 Missense_Mutation p.P565R 0.42 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-62-8399-01 5 143586314 143586314 C T KCTD16 Nonsense_Mutation p.R13* 0.20 TCGA-62-8399-01 5 148627386 148627386 G A ABLIM3 Missense_Mutation p.M531I 0.14 deleterious(0.03) probably_damaging(0.993) TCGA-62-8399-01 5 149495388 149495388 C G PDGFRB Missense_Mutation p.E1087Q 0.20 tolerated(0.25) benign(0.1) TCGA-62-8399-01 5 154173449 154173449 G C LARP1 Missense_Mutation p.D243H 0.36 deleterious(0) probably_damaging(0.999) TCGA-62-8399-01 5 16769190 16769190 G A MYO10 Silent p.F351F 0.08 TCGA-62-8399-01 5 168114084 168114084 C G SLIT3 Missense_Mutation p.E1072Q 0.29 tolerated(0.07) probably_damaging(0.999) TCGA-62-8399-01 5 169174499 169174499 C A DOCK2 Silent p.I789I 0.45 TCGA-62-8399-01 5 174168 174168 G T PLEKHG4B Missense_Mutation p.D1097Y 0.83 deleterious(0.02) benign(0.304) TCGA-62-8399-01 5 174868671 174868671 C A DRD1 3'UTR 0.44 TCGA-62-8399-01 5 175530274 175530274 G T FAM153B Nonsense_Mutation p.E160* 0.23 TCGA-62-8399-01 5 176070735 176070735 C A EIF4E1B Missense_Mutation p.A99E 0.42 deleterious(0) probably_damaging(0.98) TCGA-62-8399-01 5 179302957 179302957 C G TBC1D9B Missense_Mutation p.E621D 0.37 deleterious(0) possibly_damaging(0.681) TCGA-62-8399-01 5 179302958 179302958 T C TBC1D9B Missense_Mutation p.E621G 0.37 deleterious(0) probably_damaging(0.976) TCGA-62-8399-01 5 24505293 24505293 G T CDH10 Missense_Mutation p.L441I 0.12 tolerated(1) benign(0.001) TCGA-62-8399-01 5 33459940 33459940 G A TARS Silent p.L441L 0.05 TCGA-62-8399-01 5 34954657 34954657 G C DNAJC21 Splice_Site p.X524_splice 0.08 TCGA-62-8399-01 5 35965879 35965879 G C UGT3A1 Missense_Mutation p.S151C 0.06 tolerated(0.09) probably_damaging(0.928) TCGA-62-8399-01 5 40681390 40681390 C T PTGER4 Silent p.L99L 0.07 TCGA-62-8399-01 5 41051129 41051129 T G MROH2B Missense_Mutation p.S432R 0.12 deleterious(0) probably_damaging(0.988) TCGA-62-8399-01 5 41058230 41058230 G - MROH2B Frame_Shift_Del p.L231Wfs*8 0.09 TCGA-62-8399-01 5 5237123 5237123 G C ADAMTS16 Missense_Mutation p.D689H 0.04 deleterious(0) probably_damaging(0.99) TCGA-62-8399-01 5 52979051 52979051 G T NDUFS4 Nonstop_Mutation p.*176Yext*9 0.21 TCGA-62-8399-01 5 64920187 64920187 C A TRIM23 5'UTR 0.27 TCGA-62-8399-01 5 6668361 6668361 A G SRD5A1 Missense_Mutation p.I254V 0.68 tolerated(0.72) benign(0.006) TCGA-62-8399-01 5 71495084 71495084 G T MAP1B Nonsense_Mutation p.E1968* 0.12 TCGA-62-8399-01 5 73161801 73161801 G C ARHGEF28 Missense_Mutation p.E705D 0.13 tolerated(0.27) benign(0.016) TCGA-62-8399-01 5 75893301 75893301 G C IQGAP2 Silent p.P315P 0.32 TCGA-62-8399-01 5 75893302 75893302 G T IQGAP2 Nonsense_Mutation p.E316* 0.32 TCGA-62-8399-01 5 75932977 75932977 A G IQGAP2 Silent p.S633S 0.36 TCGA-62-8399-01 5 825342 825342 C T ZDHHC11 Silent p.L320L 0.10 TCGA-62-8399-01 6 108070936 108070936 G C SCML4 Missense_Mutation p.Q80E 0.24 deleterious(0.01) possibly_damaging(0.829) TCGA-62-8399-01 6 110778187 110778187 G C SLC22A16 Missense_Mutation p.F29L 0.21 deleterious(0.01) benign(0.446) TCGA-62-8399-01 6 117710887 117710887 G A ROS1 Missense_Mutation p.P462L 0.63 tolerated(0.66) benign(0.169) TCGA-62-8399-01 6 127898459 127898459 C A C6orf58 Nonsense_Mutation p.Y43* 0.44 TCGA-62-8399-01 6 129468150 129468150 G T LAMA2 Missense_Mutation p.C289F 0.16 deleterious(0) probably_damaging(1) TCGA-62-8399-01 6 130762682 130762682 T C TMEM200A Missense_Mutation p.L372P 0.08 tolerated(0.26) benign(0.004) TCGA-62-8399-01 6 132781962 132781962 T A STX7 Missense_Mutation p.I241F 0.57 deleterious(0.05) benign(0.02) TCGA-62-8399-01 6 139564104 139564104 G C TXLNB Silent p.L538L 0.34 TCGA-62-8399-01 6 143096087 143096087 A T HIVEP2 5'UTR 0.33 TCGA-62-8399-01 6 25551170 25551170 G A LRRC16A Silent p.E787E 0.16 TCGA-62-8399-01 6 26032181 26032181 C T HIST1H3B Silent p.V36V 0.14 TCGA-62-8399-01 6 26056141 26056141 C G HIST1H1C Missense_Mutation p.K172N 0.17 deleterious(0.01) unknown(0) TCGA-62-8399-01 6 27775538 27775538 G A HIST1H2BL Silent p.V49V 0.07 TCGA-62-8399-01 6 27776296 27776296 C T HIST1H2AI Silent p.I103I 0.12 TCGA-62-8399-01 6 27925520 27925520 C A OR2B6 Missense_Mutation p.L168I 0.37 deleterious(0.04) possibly_damaging(0.846) TCGA-62-8399-01 6 28294353 28294353 C G ZSCAN31 Missense_Mutation p.E271Q 0.14 tolerated(0.41) benign(0.012) TCGA-62-8399-01 6 28543007 28543007 G A SCAND3 Missense_Mutation p.S492L 0.20 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-62-8399-01 6 28971779 28971779 C T ZNF311 5'UTR 0.15 TCGA-62-8399-01 6 29054716 29054716 A G OR2B3 Missense_Mutation p.F104L 0.06 deleterious(0.05) benign(0.049) TCGA-62-8399-01 6 29054788 29054788 G C OR2B3 Missense_Mutation p.H80D 0.19 deleterious(0) benign(0.044) TCGA-62-8399-01 6 29080322 29080322 A T OR2J3 Missense_Mutation p.T219S 0.30 tolerated(0.24) benign(0.007) TCGA-62-8399-01 6 30127012 30127012 T C TRIM10 Missense_Mutation p.H147R 0.38 tolerated(0.41) benign(0.001) TCGA-62-8399-01 6 31752074 31752074 C A VARS Nonsense_Mutation p.E530* 0.36 TCGA-62-8399-01 6 32847262 32847262 G C PPP1R2P1 RNA 0.23 TCGA-62-8399-01 6 33272841 33272841 G T TAPBP Missense_Mutation p.Q265K 0.16 deleterious(0.04) probably_damaging(1) TCGA-62-8399-01 6 35428396 35428396 G T FANCE Splice_Site p.X461_splice 0.31 TCGA-62-8399-01 6 38881668 38881668 C T DNAH8 Silent p.L3084L 0.19 TCGA-62-8399-01 6 39282819 39282819 G A KCNK16 3'UTR 0.28 TCGA-62-8399-01 6 39304284 39304284 C G KIF6 3'UTR 0.10 TCGA-62-8399-01 6 43307518 43307518 G C ZNF318 Missense_Mutation p.I1406M 0.14 probably_damaging(0.957) TCGA-62-8399-01 6 43307776 43307776 G C ZNF318 Missense_Mutation p.I1320M 0.25 probably_damaging(1) TCGA-62-8399-01 6 43499270 43499270 G C XPO5 Missense_Mutation p.F829L 0.04 tolerated(0.31) benign(0.002) TCGA-62-8399-01 6 44199767 44199767 C G SLC29A1 Missense_Mutation p.I299M 0.12 deleterious(0) possibly_damaging(0.739) TCGA-62-8399-01 6 47650193 47650204 CCATTGGCAATT - GPR111 In_Frame_Del p.I634_S637del 0.33 TCGA-62-8399-01 6 47846775 47846775 T C PTCHD4 Missense_Mutation p.N602S 0.36 tolerated(0.1) benign(0.002) TCGA-62-8399-01 6 52329857 52329857 A G EFHC1 Missense_Mutation p.I361V 0.22 tolerated(0.28) benign(0.001) TCGA-62-8399-01 6 54254606 54254606 G T TINAG Missense_Mutation p.W438C 0.24 deleterious(0) probably_damaging(1) TCGA-62-8399-01 6 55264013 55264013 T C GFRAL Silent p.L330L 0.35 TCGA-62-8399-01 6 637808 637808 G T EXOC2 Nonsense_Mutation p.S4* 0.11 TCGA-62-8399-01 6 66115182 66115182 G A EYS Missense_Mutation p.S314F 0.26 tolerated(0.08) benign(0.144) TCGA-62-8399-01 6 70744142 70744142 G C COL19A1 Missense_Mutation p.L362F 0.22 tolerated(0.14) unknown(0) TCGA-62-8399-01 6 70979357 70979357 G T COL9A1 Silent p.G403G 0.29 TCGA-62-8399-01 6 7583533 7583533 G T DSP Missense_Mutation p.R2013L 0.39 benign(0.254) TCGA-62-8399-01 7 100459371 100459371 C G SLC12A9 Missense_Mutation p.L517V 0.19 deleterious(0) probably_damaging(0.998) TCGA-62-8399-01 7 102566797 102566797 C A FBXL13 Nonsense_Mutation p.E268* 0.23 TCGA-62-8399-01 7 103032181 103032181 T C SLC26A5 Missense_Mutation p.E374G 0.30 deleterious(0) probably_damaging(0.998) TCGA-62-8399-01 7 103969248 103969248 T C LHFPL3 Silent p.A7A 0.20 TCGA-62-8399-01 7 105672972 105672972 G C CDHR3 Silent p.G829G 0.12 TCGA-62-8399-01 7 107744992 107744992 C G LAMB4 Missense_Mutation p.D315H 0.36 deleterious(0) probably_damaging(0.971) TCGA-62-8399-01 7 107808783 107808783 G C NRCAM Missense_Mutation p.I1084M 0.24 deleterious(0) benign(0.009) TCGA-62-8399-01 7 108154677 108154679 TTC - PNPLA8 In_Frame_Del p.R372del 0.10 TCGA-62-8399-01 7 11022137 11022137 C T PHF14 Missense_Mutation p.S84F 0.35 tolerated_low_confidence(0.06) unknown(0) TCGA-62-8399-01 7 111508150 111508150 C A DOCK4 Missense_Mutation p.G724C 0.44 tolerated(0.42) benign(0.037) TCGA-62-8399-01 7 11521544 11521544 G T THSD7A Missense_Mutation p.P630T 0.14 deleterious(0) possibly_damaging(0.792) TCGA-62-8399-01 7 120428947 120428947 C A TSPAN12 Missense_Mutation p.C206F 0.21 deleterious(0) probably_damaging(1) TCGA-62-8399-01 7 132192669 132192669 C T PLXNA4 Missense_Mutation p.E262K 0.17 tolerated(0.46) probably_damaging(0.963) TCGA-62-8399-01 7 137028300 137028300 C A PTN 5'UTR 0.25 TCGA-62-8399-01 7 137590566 137590566 A T CREB3L2 Missense_Mutation p.L266Q 0.39 deleterious(0.04) probably_damaging(0.995) TCGA-62-8399-01 7 142364205 142364205 G T TRBV24-1 5'UTR 0.19 TCGA-62-8399-01 7 143000898 143000898 A T CASP2 Missense_Mutation p.D330V 0.55 deleterious(0) probably_damaging(0.996) TCGA-62-8399-01 7 143053718 143053718 G A FAM131B Silent p.L336L 0.22 TCGA-62-8399-01 7 146536982 146536982 G C CNTNAP2 Missense_Mutation p.D130H 0.14 deleterious(0) probably_damaging(0.984) TCGA-62-8399-01 7 149428770 149428770 C T KRBA1 Nonsense_Mutation p.Q718* 0.19 TCGA-62-8399-01 7 150654475 150654475 C A KCNH2 Missense_Mutation p.K344N 0.11 tolerated(0.76) benign(0.147) TCGA-62-8399-01 7 151167735 151167735 C A RHEB Silent p.V128V 0.17 TCGA-62-8399-01 7 155534576 155534576 A C RBM33 Missense_Mutation p.N705H 0.42 deleterious(0) unknown(0) TCGA-62-8399-01 7 18975531 18975531 C A HDAC9 Nonsense_Mutation p.S968* 0.21 TCGA-62-8399-01 7 21641221 21641221 C G DNAH11 Silent p.V1211V 0.27 TCGA-62-8399-01 7 21750193 21750193 G T DNAH11 Missense_Mutation p.G2243C 0.50 benign(0.283) TCGA-62-8399-01 7 2578101 2578101 C T BRAT1 Missense_Mutation p.E690K 0.05 tolerated(0.08) benign(0.021) TCGA-62-8399-01 7 27185314 27185314 G C HOXA6 Missense_Mutation p.P222R 0.22 tolerated(0.52) possibly_damaging(0.799) TCGA-62-8399-01 7 31862811 31862811 A T PDE1C Silent p.S546S 0.26 TCGA-62-8399-01 7 37262269 37262269 A G ELMO1 Missense_Mutation p.I244T 0.41 deleterious(0) possibly_damaging(0.7) TCGA-62-8399-01 7 37780047 37780047 C A GPR141 Missense_Mutation p.P18T 0.36 tolerated(0.39) benign(0.081) TCGA-62-8399-01 7 37953814 37953814 C A SFRP4 Splice_Site p.X198_splice 0.17 TCGA-62-8399-01 7 40174644 40174644 G T SUGCT Missense_Mutation p.A16S 0.33 tolerated(0.38) possibly_damaging(0.567) TCGA-62-8399-01 7 43484791 43484791 G C HECW1 Missense_Mutation p.D674H 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-62-8399-01 7 72267446 72267446 C A TYW1B Missense_Mutation p.G272V 0.29 deleterious(0) probably_damaging(0.996) TCGA-62-8399-01 7 80302097 80302097 C T CD36 Silent p.F379F 0.18 TCGA-62-8399-01 7 81372768 81372768 C G HGF Missense_Mutation p.D256H 0.23 tolerated(0.05) probably_damaging(0.965) TCGA-62-8399-01 7 84671526 84671526 G T SEMA3D Missense_Mutation p.P313T 0.18 deleterious(0) probably_damaging(0.999) TCGA-62-8399-01 7 99950878 99950878 G C PILRB 5'UTR 0.19 TCGA-62-8399-01 8 102504952 102504952 G C GRHL2 5'UTR 0.19 TCGA-62-8399-01 8 10468736 10468736 G T RP1L1 Missense_Mutation p.R958S 0.25 possibly_damaging(0.874) TCGA-62-8399-01 8 106813484 106813484 C T ZFPM2 Missense_Mutation p.P392S 0.47 tolerated(0.39) benign(0.034) TCGA-62-8399-01 8 11703195 11703195 G C CTSB Silent p.S299S 0.33 TCGA-62-8399-01 8 125103759 125103759 C A FER1L6 Missense_Mutation p.P1496H 0.44 deleterious(0.05) probably_damaging(0.946) TCGA-62-8399-01 8 133187730 133187730 C T KCNQ3 Silent p.E301E 0.24 TCGA-62-8399-01 8 13959923 13959923 A T SGCZ Missense_Mutation p.C236S 0.21 tolerated(1) benign(0.04) TCGA-62-8399-01 8 1581150 1581150 A G DLGAP2 Missense_Mutation p.D503G 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-62-8399-01 8 23425845 23425845 G T SLC25A37 Silent p.G150G 0.20 TCGA-62-8399-01 8 27308291 27308291 G T PTK2B Missense_Mutation p.S789I 0.32 tolerated(0.11) benign(0.382) TCGA-62-8399-01 8 28574136 28574136 G T EXTL3 Missense_Mutation p.R187L 0.21 deleterious(0) probably_damaging(0.995) TCGA-62-8399-01 8 3267014 3267014 G A CSMD1 Silent p.L559L 0.26 TCGA-62-8399-01 8 33356157 33356157 C T MAK16 3'UTR 0.27 TCGA-62-8399-01 8 38095710 38095710 C T DDHD2 Missense_Mutation p.S202F 0.14 tolerated(0.72) benign(0.033) TCGA-62-8399-01 8 39534965 39534965 C A ADAM18 Missense_Mutation p.P514Q 0.32 deleterious(0.02) probably_damaging(0.988) TCGA-62-8399-01 8 41791831 41791831 C A KAT6A Missense_Mutation p.D1303Y 0.23 unknown(0) TCGA-62-8399-01 8 42037843 42037843 G C PLAT Missense_Mutation p.P380R 0.18 deleterious(0.01) possibly_damaging(0.848) TCGA-62-8399-01 8 48713447 48713447 G A PRKDC Silent p.L3340L 0.18 TCGA-62-8399-01 8 51306816 51306816 C A SNTG1 Silent p.A6A 0.37 TCGA-62-8399-01 8 68346418 68346418 G C CPA6 Missense_Mutation p.S299C 0.21 deleterious(0) probably_damaging(1) TCGA-62-8399-01 8 71036285 71036285 C T NCOA2 Missense_Mutation p.G1376E 0.22 deleterious(0.02) benign(0.065) TCGA-62-8399-01 8 75757725 75757725 G T PI15 Missense_Mutation p.A212S 0.55 tolerated(1) benign(0.001) TCGA-62-8399-01 8 77617657 77617657 G A ZFHX4 Missense_Mutation p.C445Y 0.58 possibly_damaging(0.588) TCGA-62-8399-01 8 86027781 86027781 C T LRRCC1 Nonsense_Mutation p.Q298* 0.26 TCGA-62-8399-01 8 86573833 86573833 C A REXO1L1P Missense_Mutation p.D632Y 0.12 deleterious(0) probably_damaging(0.934) TCGA-62-8399-01 8 87162500 87162500 G A ATP6V0D2 Missense_Mutation p.V267I 0.26 tolerated(0.37) benign(0.182) TCGA-62-8399-01 9 104432536 104432536 A T GRIN3A Missense_Mutation p.L720M 0.51 deleterious(0) probably_damaging(1) TCGA-62-8399-01 9 108110687 108110687 C T SLC44A1 Missense_Mutation p.S152F 0.28 deleterious(0.03) benign(0.044) TCGA-62-8399-01 9 109697836 109697836 A G ZNF462 Missense_Mutation p.K2057E 0.48 possibly_damaging(0.779) TCGA-62-8399-01 9 119382705 119382705 C G ASTN2 Silent p.L979L 0.13 TCGA-62-8399-01 9 120476743 120476743 C T TLR4 Silent p.L779L 0.42 TCGA-62-8399-01 9 125240185 125240185 G T OR1J1 Missense_Mutation p.S7R 0.07 deleterious_low_confidence(0) possibly_damaging(0.621) TCGA-62-8399-01 9 125563287 125563287 C A OR1K1 Missense_Mutation p.R296S 0.36 tolerated(0.06) benign(0.042) TCGA-62-8399-01 9 127651473 127651473 C T GOLGA1 Silent p.L570L 0.10 TCGA-62-8399-01 9 127782985 127782985 G C SCAI Silent p.L215L 0.06 TCGA-62-8399-01 9 130580907 130580907 C T ENG Intron 0.20 TCGA-62-8399-01 9 132630289 132630289 C T USP20 Silent p.T232T 0.18 TCGA-62-8399-01 9 133780697 133780697 G T FIBCD1 Missense_Mutation p.F350L 0.10 deleterious(0.01) possibly_damaging(0.477) TCGA-62-8399-01 9 136269152 136269152 C A C9orf96 Missense_Mutation p.A571D 0.20 deleterious(0) probably_damaging(0.988) TCGA-62-8399-01 9 138650351 138650351 C A KCNT1 Missense_Mutation p.T284K 0.42 deleterious(0) probably_damaging(0.988) TCGA-62-8399-01 9 139835622 139835622 C T FBXW5 Missense_Mutation p.G487R 0.24 deleterious(0) probably_damaging(1) TCGA-62-8399-01 9 140777280 140777280 G T CACNA1B Missense_Mutation p.G159C 0.18 deleterious(0) possibly_damaging(0.802) TCGA-62-8399-01 9 36148589 36148589 G A GLIPR2 Silent p.P56P 0.62 TCGA-62-8399-01 9 39888427 39888427 C A SPATA31A2 Missense_Mutation p.P472T 0.36 deleterious(0.01) benign(0) TCGA-62-8399-01 9 70999419 70999419 G A PGM5 Missense_Mutation p.R177K 0.27 tolerated(1) benign(0.006) TCGA-62-8399-01 9 71007278 71007278 C T PGM5 Missense_Mutation p.P311L 0.23 deleterious(0) probably_damaging(0.999) TCGA-62-8399-01 9 71628276 71628276 T A PRKACG Missense_Mutation p.I245F 0.29 tolerated(0.62) benign(0.059) TCGA-62-8399-01 9 71861581 71861581 G T TJP2 Intron 0.31 TCGA-62-8399-01 9 74825638 74825638 T C GDA Silent p.C140C 0.37 TCGA-62-8399-01 9 91943612 91943612 C G SECISBP2 Missense_Mutation p.I204M 0.33 tolerated(0.11) possibly_damaging(0.541) TCGA-62-8399-01 9 94486429 94486429 T G ROR2 Missense_Mutation p.N783H 0.28 deleterious(0) probably_damaging(0.95) TCGA-62-8399-01 9 99114339 99114339 G A SLC35D2 Silent p.L134L 0.20 TCGA-62-8399-01 X 101826406 101826406 G A NXF4 RNA 0.17 TCGA-62-8399-01 X 106116957 106116957 G T TBC1D8B Missense_Mutation p.G1042V 0.21 tolerated(0.17) benign(0.021) TCGA-62-8399-01 X 111090523 111090523 G A TRPC5 Nonsense_Mutation p.Q507* 0.39 TCGA-62-8399-01 X 125298588 125298588 C A DCAF12L2 Missense_Mutation p.E440D 0.38 tolerated(0.47) benign(0.043) TCGA-62-8399-01 X 129058863 129058863 G C UTP14A Missense_Mutation p.E481Q 0.21 tolerated(0.57) benign(0.251) TCGA-62-8399-01 X 131212040 131212040 C G FRMD7 Missense_Mutation p.E669Q 0.46 tolerated(0.42) benign(0.05) TCGA-62-8399-01 X 136112511 136112511 C T GPR101 Nonsense_Mutation p.W441* 0.18 TCGA-62-8399-01 X 140995163 140995163 C A MAGEC1 Missense_Mutation p.S658Y 0.37 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-62-8399-01 X 144904063 144904063 C T SLITRK2 Silent p.N40N 0.10 TCGA-62-8399-01 X 14708874 14708874 C A GLRA2 Missense_Mutation p.L325I 0.19 deleterious(0.01) probably_damaging(0.962) TCGA-62-8399-01 X 148798464 148798464 C G MAGEA11 3'UTR 0.71 TCGA-62-8399-01 X 151131057 151131057 T A GABRE Missense_Mutation p.N134I 0.45 deleterious(0) possibly_damaging(0.856) TCGA-62-8399-01 X 152968459 152968459 C - BCAP31 Frame_Shift_Del p.E245Rfs*7 0.21 TCGA-62-8399-01 X 154159043 154159043 C A F8 Missense_Mutation p.A1008S 0.46 tolerated(0.23) benign(0.003) TCGA-62-8399-01 X 2825402 2825402 C T ARSD Missense_Mutation p.M564I 0.18 tolerated(0.41) benign(0) TCGA-62-8399-01 X 3002301 3002301 T C ARSF Silent p.L142L 0.24 TCGA-62-8399-01 X 30237422 30237422 G T MAGEB2 Missense_Mutation p.G242V 0.24 deleterious(0) probably_damaging(1) TCGA-62-8399-01 X 34149640 34149640 G T FAM47A Silent p.P252P 0.10 TCGA-62-8399-01 X 53285034 53285034 G C IQSEC2 Missense_Mutation p.S316C 0.17 tolerated(0.49) benign(0.02) TCGA-62-8399-01 X 71895993 71895993 C A PHKA1 Missense_Mutation p.G182V 0.41 deleterious(0) probably_damaging(1) TCGA-62-8399-01 X 71895994 71895994 C A PHKA1 Missense_Mutation p.G182W 0.42 deleterious(0) probably_damaging(1) TCGA-62-8399-01 X 92927254 92927254 A T NAP1L3 Silent p.P350P 0.61 TCGA-62-8399-01 Y 5605965 5605965 G T PCDH11Y Missense_Mutation p.M1335I 0.47 tolerated_low_confidence(0.34) benign(0.002) TCGA-62-8402-01 10 51821336 51821336 C T RP11-324H6.5 RNA 0.30 TCGA-62-8402-01 11 34680502 34680502 A G EHF 3'UTR 0.11 TCGA-62-8402-01 11 55873242 55873242 G A OR8H2 Missense_Mutation p.V242I 0.25 deleterious(0) benign(0.003) TCGA-62-8402-01 11 64684654 64684655 - G ATG2A 5'UTR 0.19 TCGA-62-8402-01 11 67560622 67560622 G A FAM86C2P RNA 0.30 TCGA-62-8402-01 11 76063389 76063389 C T PRKRIR Missense_Mutation p.D269N 0.15 deleterious(0.02) benign(0.196) TCGA-62-8402-01 12 22025639 22025639 T C ABCC9 Silent p.Q706Q 0.70 TCGA-62-8402-01 12 3686075 3686075 C T PRMT8 Missense_Mutation p.R251W 0.67 deleterious(0) probably_damaging(0.955) TCGA-62-8402-01 12 53400266 53400266 A G EIF4B 5'UTR 0.22 TCGA-62-8402-01 12 77209682 77209682 C T ZDHHC17 Silent p.N218N 0.33 TCGA-62-8402-01 13 26112159 26112159 G C ATP8A2 Missense_Mutation p.G181R 0.31 deleterious(0.04) probably_damaging(0.982) TCGA-62-8402-01 14 80328223 80328223 C T NRXN3 Silent p.N1034N 0.09 TCGA-62-8402-01 15 28327033 28327033 G T OCA2 5'UTR 0.70 TCGA-62-8402-01 16 21734264 21734264 A G OTOA Silent p.R615R 0.28 TCGA-62-8402-01 16 27777780 27777780 G A KIAA0556 Silent p.E1320E 0.14 TCGA-62-8402-01 16 31122024 31122024 A G BCKDK Missense_Mutation p.I220V 0.21 tolerated(0.05) possibly_damaging(0.478) TCGA-62-8402-01 16 67210803 67210803 C G KIAA0895L Missense_Mutation p.D443H 0.42 deleterious(0) probably_damaging(0.982) TCGA-62-8402-01 17 36455403 36455403 C A MRPL45 Silent p.R111R 0.38 TCGA-62-8402-01 17 65722703 65722703 A G NOL11 Silent p.A264A 0.68 TCGA-62-8402-01 17 67188758 67188758 C T ABCA10 Missense_Mutation p.C606Y 0.78 deleterious(0) possibly_damaging(0.844) TCGA-62-8402-01 17 7225208 7225208 C T NEURL4 Silent p.E949E 0.70 TCGA-62-8402-01 17 7417302 7417302 C T POLR2A Missense_Mutation p.P1907S 0.17 unknown(0) TCGA-62-8402-01 17 7578401 7578401 G T TP53 Missense_Mutation p.P177T 0.76 deleterious(0) probably_damaging(0.981) TCGA-62-8402-01 18 32834330 32834330 G T ZSCAN30 Missense_Mutation p.A190D 0.06 tolerated(0.32) benign(0.08) TCGA-62-8402-01 19 11144175 11144175 G A SMARCA4 Silent p.E1252E 0.35 TCGA-62-8402-01 19 12878664 12878664 G A HOOK2 Silent p.C423C 0.60 TCGA-62-8402-01 19 46890676 46890676 G A PPP5C Silent p.R367R 0.48 TCGA-62-8402-01 19 54760437 54760437 A G LILRB5 Silent p.Y90Y 0.57 TCGA-62-8402-01 19 5788165 5788165 C T DUS3L Missense_Mutation p.R322Q 0.18 deleterious(0) probably_damaging(1) TCGA-62-8402-01 1 157737032 157737032 A G FCRL2 Missense_Mutation p.V384A 0.18 deleterious(0) benign(0.028) TCGA-62-8402-01 1 183895432 183895432 G A RGL1 3'UTR 0.15 TCGA-62-8402-01 1 204948613 204948613 G A NFASC Missense_Mutation p.R701H 0.15 deleterious(0.01) probably_damaging(1) TCGA-62-8402-01 1 227935682 227935682 C G SNAP47 Missense_Mutation p.S127C 0.09 deleterious(0) probably_damaging(0.971) TCGA-62-8402-01 1 233152744 233152744 G A PCNXL2 Missense_Mutation p.L1588F 0.36 deleterious(0) possibly_damaging(0.694) TCGA-62-8402-01 1 237754009 237754009 C T RYR2 Nonsense_Mutation p.Q1293* 0.14 TCGA-62-8402-01 1 27432511 27432511 G A SLC9A1 Silent p.F450F 0.56 TCGA-62-8402-01 1 45506179 45506179 G A ZSWIM5 Silent p.D547D 0.25 TCGA-62-8402-01 1 46099208 46099208 G A GPBP1L1 Missense_Mutation p.R333W 0.17 tolerated(0.1) benign(0.009) TCGA-62-8402-01 20 60318831 60318831 C T CDH4 Missense_Mutation p.H128Y 0.13 tolerated(0.07) benign(0.001) TCGA-62-8402-01 22 21989567 21989567 G A CCDC116 Intron 0.17 TCGA-62-8402-01 2 109086202 109086202 G A GCC2 Missense_Mutation p.M139I 0.78 tolerated(0.2) benign(0) TCGA-62-8402-01 2 132259054 132259054 G A AC093838.4 RNA 0.66 TCGA-62-8402-01 2 175618228 175618228 C T CHRNA1 Intron 0.13 TCGA-62-8402-01 2 197004496 197004496 C A STK17B Missense_Mutation p.L228F 0.57 deleterious(0.02) probably_damaging(1) TCGA-62-8402-01 2 233164818 233164818 C G DIS3L2 Silent p.R576R 0.67 TCGA-62-8402-01 2 32530695 32530695 A T YIPF4 Nonstop_Mutation p.*245Cext*12 0.56 TCGA-62-8402-01 4 100534105 100534105 C T MTTP Silent p.I675I 0.13 TCGA-62-8402-01 4 114199020 114199020 G T ANK2 Missense_Mutation p.A571S 0.16 possibly_damaging(0.892) TCGA-62-8402-01 4 55593652 55593652 C T KIT Missense_Mutation p.P573L 0.22 deleterious(0) probably_damaging(0.918) TCGA-62-8402-01 4 99812466 99812466 A G EIF4E Missense_Mutation p.F48S 0.10 deleterious(0.02) probably_damaging(0.923) TCGA-62-8402-01 5 13883105 13883105 C G DNAH5 Missense_Mutation p.E1028Q 0.11 benign(0.403) TCGA-62-8402-01 5 140166115 140166115 G T PCDHA1 Missense_Mutation p.Q80H 0.11 deleterious_low_confidence(0) possibly_damaging(0.827) TCGA-62-8402-01 5 34020713 34020713 C G C1QTNF3 Missense_Mutation p.G312A 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-62-8402-01 5 41382254 41382254 C A PLCXD3 Silent p.L162L 0.08 TCGA-62-8402-01 5 9108295 9108295 C T SEMA5A Missense_Mutation p.R677H 0.07 tolerated(0.09) benign(0.04) TCGA-62-8402-01 6 29455257 29455257 G T MAS1L Silent p.V141V 0.21 TCGA-62-8402-01 6 31976187 31976187 C T AL645922.1 5'Flank 0.14 TCGA-62-8402-01 6 33541875 33541875 C A BAK1 Missense_Mutation p.R156L 0.34 deleterious(0.03) benign(0.215) TCGA-62-8402-01 7 139299149 139299149 C T HIPK2 Missense_Mutation p.A625T 0.08 tolerated(0.25) benign(0.004) TCGA-62-8402-01 7 55242465 55242479 GGAATTAAGAGAAGC - EGFR In_Frame_Del p.E746_A750del 0.39 TCGA-62-8402-01 7 6776960 6776960 C T PMS2CL RNA 0.23 TCGA-62-8402-01 8 27779614 27779614 G T SCARA5 Missense_Mutation p.D130E 0.60 tolerated(0.1) benign(0.073) TCGA-62-8402-01 8 92352771 92352771 G A SLC26A7 Missense_Mutation p.D340N 0.37 tolerated(0.08) probably_damaging(0.95) TCGA-62-8402-01 9 37436805 37436805 G A GRHPR 3'UTR 0.53 TCGA-62-8402-01 X 102979197 102979197 C T GLRA4 Silent p.Q101Q 0.11 TCGA-62-8402-01 X 123787525 123787525 T G TENM1 Missense_Mutation p.H426P 0.41 deleterious(0.02) benign(0.247) TCGA-62-8402-01 X 131803197 131803197 G A HS6ST2 Silent p.N337N 0.06 TCGA-62-8402-01 X 148564646 148564646 G A IDS Silent p.H217H 0.42 TCGA-62-8402-01 X 153549137 153549137 C T TKTL1 Missense_Mutation p.R355W 0.16 tolerated(0.06) probably_damaging(0.998) TCGA-62-8402-01 X 30268911 30268911 G T MAGEB1 Nonsense_Mutation p.E101* 0.28 TCGA-62-8402-01 X 48690632 48690632 C T PCSK1N Silent p.A78A 0.43 TCGA-62-8402-01 X 51487183 51487183 A C GSPT2 Missense_Mutation p.K154T 0.26 tolerated(0.28) benign(0.004) TCGA-62-8402-01 X 55185586 55185586 G C FAM104B Missense_Mutation p.I32M 0.05 deleterious(0) benign(0.283) TCGA-62-8402-01 X 70361730 70361730 C G MED12 Intron 0.46 TCGA-62-8402-01 X 74295409 74295409 C G ABCB7 Missense_Mutation p.G216R 0.06 deleterious(0) probably_damaging(0.974) TCGA-62-A46O-01 10 106075809 106075809 T C ITPRIP Translation_Start_Site p.M1? 0.91 deleterious(0.03) benign(0.025) TCGA-62-A46O-01 10 124273879 124273879 G T HTRA1 3'UTR 0.87 TCGA-62-A46O-01 10 126312150 126312150 G C FAM53B Silent p.L310L 0.90 TCGA-62-A46O-01 10 133058554 133058554 A G TCERG1L Missense_Mutation p.I275T 0.86 deleterious(0.05) possibly_damaging(0.859) TCGA-62-A46O-01 10 134261292 134261292 C A C10orf91 Missense_Mutation p.F55L 0.22 tolerated_low_confidence(0.26) benign(0) TCGA-62-A46O-01 10 16989353 16989353 C A CUBN Silent p.T1741T 0.50 TCGA-62-A46O-01 10 18280167 18280167 G T SLC39A12 Nonsense_Mutation p.G453* 0.38 TCGA-62-A46O-01 10 18284628 18284628 G T SLC39A12 Missense_Mutation p.S526I 0.61 tolerated(0.12) benign(0.099) TCGA-62-A46O-01 10 25883229 25883229 T A GPR158 Missense_Mutation p.L634H 0.52 deleterious(0) probably_damaging(0.992) TCGA-62-A46O-01 10 26559626 26559626 G T GAD2 Missense_Mutation p.D345Y 0.66 deleterious(0) probably_damaging(0.997) TCGA-62-A46O-01 10 45799502 45799502 C A OR13A1 Silent p.T123T 0.17 TCGA-62-A46O-01 10 45799522 45799522 C A OR13A1 Missense_Mutation p.A117S 0.24 tolerated(0.42) benign(0.025) TCGA-62-A46O-01 10 45799523 45799523 C T OR13A1 Missense_Mutation p.M116I 0.19 tolerated(0.2) benign(0.019) TCGA-62-A46O-01 10 46159188 46159188 T C ZFAND4 5'UTR 0.78 TCGA-62-A46O-01 10 48371148 48371148 C T ZNF488 Nonsense_Mutation p.R206* 0.17 TCGA-62-A46O-01 10 48413956 48413966 CGTGTCCTCCT - GDF2 Frame_Shift_Del p.E301Gfs*48 0.23 TCGA-62-A46O-01 10 48429502 48429502 G T GDF10 Silent p.I128I 0.58 TCGA-62-A46O-01 10 50740724 50740724 C - ERCC6-PGBD3 Frame_Shift_Del p.G96Vfs*52 0.23 TCGA-62-A46O-01 10 55782813 55782813 C A PCDH15 Missense_Mutation p.V789F 0.53 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 10 55912943 55912943 G A PCDH15 Silent p.I567I 0.58 TCGA-62-A46O-01 10 6275024 6275024 G T PFKFB3 3'UTR 0.20 TCGA-62-A46O-01 10 70178788 70178788 C A DNA2 Intron 0.34 TCGA-62-A46O-01 10 75255498 75255498 C T PPP3CB Intron 0.45 TCGA-62-A46O-01 10 75406790 75406790 T C SYNPO2L Missense_Mutation p.I874V 0.61 tolerated(0.2) benign(0.005) TCGA-62-A46O-01 10 81319086 81319086 C T SFTPA2 Missense_Mutation p.G52R 0.29 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 10 81371735 81371735 G A SFTPA1 Missense_Mutation p.G67R 0.76 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 10 85993878 85993878 C - LRIT1 Frame_Shift_Del p.E284Rfs*2 0.45 TCGA-62-A46O-01 10 87362372 87362372 C T GRID1 Silent p.A896A 0.88 TCGA-62-A46O-01 10 89544284 89544284 C A ATAD1 Missense_Mutation p.A176S 0.82 deleterious(0) probably_damaging(0.992) TCGA-62-A46O-01 10 93741445 93741445 G A BTAF1 Missense_Mutation p.A601T 0.80 tolerated(0.44) benign(0.115) TCGA-62-A46O-01 10 95660568 95660568 G A SLC35G1 Missense_Mutation p.G140D 0.78 deleterious(0) probably_damaging(0.999) TCGA-62-A46O-01 10 96748699 96748699 G T CYP2C9 Missense_Mutation p.D463Y 0.79 deleterious(0) possibly_damaging(0.879) TCGA-62-A46O-01 11 102661500 102661500 G A MMP1 Missense_Mutation p.P412S 0.43 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 11 106849364 106849364 C A GUCY1A2 Missense_Mutation p.Q156H 0.53 tolerated(0.06) benign(0.007) TCGA-62-A46O-01 11 113266822 113266822 C A ANKK1 Missense_Mutation p.A239E 0.31 deleterious(0.03) possibly_damaging(0.764) TCGA-62-A46O-01 11 113672268 113672268 C A USP28 Missense_Mutation p.D999Y 0.50 deleterious(0) probably_damaging(0.992) TCGA-62-A46O-01 11 113934754 113934754 G C ZBTB16 Missense_Mutation p.E244D 0.54 tolerated(0.08) possibly_damaging(0.746) TCGA-62-A46O-01 11 114442056 114442056 C A NXPE4 Missense_Mutation p.M413I 0.50 tolerated(0.33) benign(0.001) TCGA-62-A46O-01 11 117052224 117052224 C A SIDT2 Silent p.S92S 0.54 TCGA-62-A46O-01 11 118342823 118342823 G T KMT2A Missense_Mutation p.G317C 0.40 possibly_damaging(0.533) TCGA-62-A46O-01 11 119228471 119228471 C A USP2 Silent p.V499V 0.46 TCGA-62-A46O-01 11 121498470 121498470 G T SORL1 Missense_Mutation p.D2191Y 0.27 deleterious(0) probably_damaging(0.976) TCGA-62-A46O-01 11 12183738 12183738 G T MICAL2 Silent p.A12A 0.54 TCGA-62-A46O-01 11 12183739 12183739 G T MICAL2 Missense_Mutation p.G13W 0.54 deleterious(0) probably_damaging(0.986) TCGA-62-A46O-01 11 123624918 123624918 G T OR6X1 Missense_Mutation p.F103L 0.39 deleterious(0.02) benign(0.042) TCGA-62-A46O-01 11 123810326 123810326 G T OR4D5 Translation_Start_Site p.M1? 0.33 deleterious(0) benign(0.009) TCGA-62-A46O-01 11 123813686 123813686 G T OR6T1 Missense_Mutation p.P287Q 0.31 deleterious(0) probably_damaging(0.988) TCGA-62-A46O-01 11 124487245 124487245 C G PANX3 Missense_Mutation p.P134A 0.33 deleterious(0) probably_damaging(0.999) TCGA-62-A46O-01 11 128359203 128359203 G A ETS1 Silent p.L173L 0.12 TCGA-62-A46O-01 11 130069858 130069858 G A ST14 Missense_Mutation p.R607Q 0.19 deleterious(0.05) benign(0.077) TCGA-62-A46O-01 11 131781241 131781241 C G NTM 5'Flank 0.44 TCGA-62-A46O-01 11 1629389 1629389 C - KRTAP5-3 Frame_Shift_Del p.G76Afs*190 0.38 TCGA-62-A46O-01 11 17522656 17522656 G T USH1C Silent p.S774S 0.30 TCGA-62-A46O-01 11 17741535 17741535 T C MYOD1 Missense_Mutation p.V69A 0.34 tolerated(0.6) benign(0.002) TCGA-62-A46O-01 11 18308238 18308238 G C HPS5 Missense_Mutation p.L913V 0.27 tolerated(0.06) probably_damaging(0.999) TCGA-62-A46O-01 11 18503407 18503407 C G TSG101 Missense_Mutation p.D285H 0.12 deleterious(0.01) probably_damaging(0.953) TCGA-62-A46O-01 11 18554025 18554025 C G UEVLD Missense_Mutation p.D420H 0.67 deleterious(0) possibly_damaging(0.51) TCGA-62-A46O-01 11 1944095 1944095 C A TNNT3 5'UTR 0.46 TCGA-62-A46O-01 11 26484598 26484598 A T ANO3 Missense_Mutation p.Y112F 0.29 tolerated_low_confidence(0.16) benign(0.003) TCGA-62-A46O-01 11 30033836 30033836 C T KCNA4 Silent p.E130E 0.36 TCGA-62-A46O-01 11 32439180 32439180 G A WT1 Missense_Mutation p.T298I 0.21 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-62-A46O-01 11 32460577 32460577 A T WT1 5'Flank 0.30 TCGA-62-A46O-01 11 33581296 33581296 T A KIAA1549L Missense_Mutation p.I989N 0.50 deleterious(0) probably_damaging(0.928) TCGA-62-A46O-01 11 33581298 33581298 G C KIAA1549L Missense_Mutation p.V990L 0.51 tolerated(1) benign(0.058) TCGA-62-A46O-01 11 40136155 40136155 G C LRRC4C Missense_Mutation p.T563R 0.34 deleterious_low_confidence(0.01) benign(0.412) TCGA-62-A46O-01 11 4471245 4471245 G A OR52K2 Missense_Mutation p.A226T 0.62 tolerated(0.22) benign(0.047) TCGA-62-A46O-01 11 45246106 45246106 G T PRDM11 Missense_Mutation p.G361W 0.56 deleterious_low_confidence(0.01) possibly_damaging(0.908) TCGA-62-A46O-01 11 4661421 4661421 A T OR51D1 Missense_Mutation p.D134V 0.22 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 11 46726465 46726465 G T ZNF408 Silent p.G405G 0.30 TCGA-62-A46O-01 11 46921411 46921411 C A LRP4 Intron 0.26 TCGA-62-A46O-01 11 47436401 47436401 C T SLC39A13 Missense_Mutation p.A287V 0.24 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 11 4825129 4825129 G A OR52R1 Missense_Mutation p.P161L 0.17 deleterious(0.01) probably_damaging(1) TCGA-62-A46O-01 11 49598332 49598332 C A RP11-707M1.1 RNA 0.39 TCGA-62-A46O-01 11 49598333 49598333 T A RP11-707M1.1 RNA 0.42 TCGA-62-A46O-01 11 5080279 5080279 G T OR52E2 Missense_Mutation p.S193R 0.61 deleterious(0.01) probably_damaging(0.978) TCGA-62-A46O-01 11 5322924 5322924 G T OR51B4 Missense_Mutation p.L85I 0.47 tolerated(0.05) benign(0.049) TCGA-62-A46O-01 11 5364574 5364574 G C OR51B5 Missense_Mutation p.L61V 0.50 deleterious(0) probably_damaging(0.94) TCGA-62-A46O-01 11 55135759 55135759 T G OR4A15 Missense_Mutation p.L134V 0.47 deleterious_low_confidence(0.03) benign(0.026) TCGA-62-A46O-01 11 55798659 55798659 C A OR5AS1 Silent p.L255L 0.38 TCGA-62-A46O-01 11 56043655 56043655 T C OR5T1 Missense_Mutation p.C181R 0.40 deleterious(0) possibly_damaging(0.867) TCGA-62-A46O-01 11 56057942 56057942 G A OR8H1 Silent p.H199H 0.23 TCGA-62-A46O-01 11 56143200 56143200 T G OR8U1 Missense_Mutation p.I34S 0.31 deleterious(0) benign(0.158) TCGA-62-A46O-01 11 56143282 56143282 C A OR8U1 Missense_Mutation p.F61L 0.39 deleterious(0.01) probably_damaging(0.995) TCGA-62-A46O-01 11 5624725 5624725 C T TRIM6 Silent p.T89T 0.18 TCGA-62-A46O-01 11 57413492 57413492 C T YPEL4 Missense_Mutation p.E116K 0.29 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 11 57428963 57428963 G T CLP1 3'UTR 0.33 TCGA-62-A46O-01 11 58190188 58190188 T C OR5B2 Missense_Mutation p.M183V 0.32 deleterious_low_confidence(0.02) benign(0.098) TCGA-62-A46O-01 11 59814553 59814553 G A OOSP2 3'UTR 0.42 TCGA-62-A46O-01 11 59861506 59861506 G T MS4A2 Nonsense_Mutation p.G203* 0.27 TCGA-62-A46O-01 11 6007333 6007333 G - OR52L1 Frame_Shift_Del p.F277Sfs*36 0.21 TCGA-62-A46O-01 11 6024302 6024302 C A OR56A4 Missense_Mutation p.R26I 0.74 deleterious_low_confidence(0.03) possibly_damaging(0.506) TCGA-62-A46O-01 11 60698110 60698110 G T TMEM132A Missense_Mutation p.G332V 0.37 deleterious(0.03) benign(0.082) TCGA-62-A46O-01 11 61511089 61511089 G C DAGLA Missense_Mutation p.D753H 0.46 tolerated_low_confidence(0.07) possibly_damaging(0.781) TCGA-62-A46O-01 11 61608001 61608001 C T FADS2 Nonsense_Mutation p.Q172* 0.45 TCGA-62-A46O-01 11 62455571 62455571 C G LRRN4CL Missense_Mutation p.R137T 0.34 deleterious(0.02) possibly_damaging(0.864) TCGA-62-A46O-01 11 64023285 64023285 G A PLCB3 Silent p.L230L 0.15 TCGA-62-A46O-01 11 64116851 64116851 G A CCDC88B Missense_Mutation p.E889K 0.33 deleterious(0) probably_damaging(0.997) TCGA-62-A46O-01 11 6431857 6431857 C G APBB1 Missense_Mutation p.D241H 0.64 deleterious(0.02) probably_damaging(0.964) TCGA-62-A46O-01 11 64603992 64603992 C A CDC42BPG Missense_Mutation p.R465S 0.42 tolerated(0.33) benign(0.08) TCGA-62-A46O-01 11 65300213 65300213 C T SCYL1 Silent p.I389I 0.10 TCGA-62-A46O-01 11 65836163 65836163 C G SF3B2 Missense_Mutation p.Q879E 0.19 tolerated(0.08) possibly_damaging(0.554) TCGA-62-A46O-01 11 66103128 66103128 G C RIN1 Silent p.L136L 0.67 TCGA-62-A46O-01 11 6623082 6623082 C A RRP8 Missense_Mutation p.G155C 0.43 deleterious_low_confidence(0) possibly_damaging(0.778) TCGA-62-A46O-01 11 6661434 6661434 C A DCHS1 Missense_Mutation p.A471S 0.20 tolerated(0.34) benign(0.027) TCGA-62-A46O-01 11 66834276 66834276 C T RHOD Silent p.F96F 0.63 TCGA-62-A46O-01 11 69972209 69972209 G T ANO1 Silent p.L335L 0.68 TCGA-62-A46O-01 11 73020595 73020595 G T ARHGEF17 Missense_Mutation p.Q304H 0.18 tolerated_low_confidence(0.24) benign(0.001) TCGA-62-A46O-01 11 74570230 74570230 C G XRRA1 Silent p.L373L 0.36 TCGA-62-A46O-01 11 77920933 77920933 G C USP35 Missense_Mutation p.E678Q 0.27 tolerated_low_confidence(0.19) unknown(0) TCGA-62-A46O-01 11 78419417 78419417 C G TENM4 Missense_Mutation p.D1400H 0.44 tolerated(0.25) benign(0.005) TCGA-62-A46O-01 11 7981413 7981413 G T NLRP10 Missense_Mutation p.N582K 0.21 tolerated(0.29) benign(0.007) TCGA-62-A46O-01 11 7981421 7981421 G T NLRP10 Missense_Mutation p.Q580K 0.65 tolerated(0.05) benign(0.164) TCGA-62-A46O-01 11 88911242 88911242 G C TYR Missense_Mutation p.G41R 0.22 tolerated(0.05) probably_damaging(0.968) TCGA-62-A46O-01 11 89392875 89392875 C G FOLH1B RNA 0.33 TCGA-62-A46O-01 11 9163530 9163530 C G DENND5A Missense_Mutation p.G1213R 0.59 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 11 92881592 92881592 A C SLC36A4 3'UTR 0.56 TCGA-62-A46O-01 11 9802008 9802008 T C SBF2 Missense_Mutation p.Q1836R 0.66 deleterious(0.02) probably_damaging(0.999) TCGA-62-A46O-01 12 102589775 102589775 T C PARPBP Silent p.F482F 0.44 TCGA-62-A46O-01 12 104134523 104134523 G A STAB2 Missense_Mutation p.R1957Q 0.39 tolerated(0.13) benign(0.387) TCGA-62-A46O-01 12 110034367 110034367 C T MVK Silent p.A392A 0.51 TCGA-62-A46O-01 12 110236612 110236612 C T TRPV4 Missense_Mutation p.R320Q 0.36 tolerated(0.34) possibly_damaging(0.826) TCGA-62-A46O-01 12 11091062 11091062 T C TAS2R14 Missense_Mutation p.I249V 0.45 tolerated(0.79) benign(0.009) TCGA-62-A46O-01 12 113385901 113385901 G C OAS3 Silent p.G342G 0.33 TCGA-62-A46O-01 12 1137353 1137353 G T ERC1 Missense_Mutation p.G95V 0.67 tolerated(0.22) probably_damaging(0.99) TCGA-62-A46O-01 12 116420268 116420268 C A MED13L Missense_Mutation p.W1699L 0.41 deleterious(0.01) probably_damaging(0.996) TCGA-62-A46O-01 12 117290463 117290463 G A RNFT2 3'Flank 0.24 TCGA-62-A46O-01 12 121764982 121764982 C A ANAPC5 Missense_Mutation p.A453S 0.43 tolerated(0.63) benign(0.006) TCGA-62-A46O-01 12 124325972 124325977 AGATCT GATCG DNAH10 Frame_Shift_Del p.K1629Rfs*13 0.23 TCGA-62-A46O-01 12 124421890 124421890 C A CCDC92 Silent p.V237V 0.43 TCGA-62-A46O-01 12 124856917 124856917 G C NCOR2 Missense_Mutation p.P820A 0.33 unknown(0) TCGA-62-A46O-01 12 130184839 130184839 C G TMEM132D Missense_Mutation p.G162R 0.31 tolerated(0.27) benign(0.041) TCGA-62-A46O-01 12 130647970 130647970 C G FZD10 Silent p.G161G 0.44 TCGA-62-A46O-01 12 15637083 15637083 T G PTPRO Missense_Mutation p.F84C 0.56 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-62-A46O-01 12 20774299 20774299 T G PDE3A Silent p.A498A 0.17 TCGA-62-A46O-01 12 21008063 21008063 C T LST3 Silent p.S62S 0.62 TCGA-62-A46O-01 12 21242857 21242857 C A SLCO1B7 Silent p.G580G 0.45 TCGA-62-A46O-01 12 2716162 2716162 C T CACNA1C Silent p.I1094I 0.69 TCGA-62-A46O-01 12 30872088 30872088 T C CAPRIN2 Intron 0.25 TCGA-62-A46O-01 12 31249672 31249672 G A DDX11 Silent p.T541T 0.55 TCGA-62-A46O-01 12 44926436 44926436 A T NELL2 Missense_Mutation p.W628R 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-62-A46O-01 12 45173752 45173752 C A NELL2 Missense_Mutation p.R180L 0.36 tolerated(0.11) possibly_damaging(0.599) TCGA-62-A46O-01 12 45567728 45567728 C G PLEKHA8P1 RNA 0.48 TCGA-62-A46O-01 12 50867319 50867319 G T LARP4 Missense_Mutation p.S556I 0.30 deleterious(0.01) possibly_damaging(0.729) TCGA-62-A46O-01 12 50867320 50867320 G T LARP4 Splice_Site p.X556_splice 0.32 TCGA-62-A46O-01 12 52284676 52284676 G T ANKRD33 Missense_Mutation p.A316S 0.36 tolerated(0.42) possibly_damaging(0.907) TCGA-62-A46O-01 12 52284697 52284697 G T ANKRD33 Missense_Mutation p.A323S 0.41 tolerated(0.08) possibly_damaging(0.907) TCGA-62-A46O-01 12 52307367 52307367 C G ACVRL1 Missense_Mutation p.P113R 0.44 tolerated(0.24) benign(0.011) TCGA-62-A46O-01 12 52960820 52960820 C - KRT74 Frame_Shift_Del p.G508Efs*53 0.27 TCGA-62-A46O-01 12 53673605 53673605 C T ESPL1 Silent p.H818H 0.35 TCGA-62-A46O-01 12 54576301 54576301 C A SMUG1 Missense_Mutation p.C131F 0.39 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 12 54943489 54943489 G C PDE1B 5'UTR 0.53 TCGA-62-A46O-01 12 55641515 55641515 G T OR6C74 Missense_Mutation p.M148I 0.49 tolerated_low_confidence(0.13) benign(0.001) TCGA-62-A46O-01 12 55714950 55714950 C A OR6C1 Missense_Mutation p.D189E 0.42 deleterious_low_confidence(0.02) benign(0.248) TCGA-62-A46O-01 12 55846486 55846486 G T OR6C2 Missense_Mutation p.Q163H 0.39 tolerated_low_confidence(0.19) benign(0.026) TCGA-62-A46O-01 12 56604190 56604190 T C RNF41 Missense_Mutation p.N85D 0.47 tolerated(0.41) benign(0.221) TCGA-62-A46O-01 12 6439176 6439176 G A TNFRSF1A Silent p.P275P 0.44 TCGA-62-A46O-01 12 6879567 6879567 G T PTMS Missense_Mutation p.D90Y 0.29 deleterious_low_confidence(0) unknown(0) TCGA-62-A46O-01 12 7639309 7639309 C A CD163 Missense_Mutation p.W748C 0.42 deleterious(0) probably_damaging(0.999) TCGA-62-A46O-01 12 7640235 7640235 G T CD163 Silent p.T590T 0.13 TCGA-62-A46O-01 12 7655116 7655116 C A CD163 Missense_Mutation p.V31L 0.47 tolerated_low_confidence(0.43) benign(0.008) TCGA-62-A46O-01 12 78513529 78513529 G A NAV3 Missense_Mutation p.G1185R 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-62-A46O-01 12 81111008 81111008 C A MYF5 Silent p.R56R 0.33 TCGA-62-A46O-01 12 81593202 81593202 T C ACSS3 Silent p.L445L 0.32 TCGA-62-A46O-01 12 8629983 8629983 A T CLEC6A Missense_Mutation p.T185S 0.51 tolerated(0.75) benign(0.001) TCGA-62-A46O-01 12 98987860 98987860 G T SLC25A3 Missense_Mutation p.G35V 0.37 tolerated(0.39) benign(0.001) TCGA-62-A46O-01 13 101833522 101833523 - T NALCN Intron 0.33 TCGA-62-A46O-01 13 103459968 103459968 G T BIVM-ERCC5 Silent p.S89S 0.29 TCGA-62-A46O-01 13 106125025 106125025 C A DAOA Missense_Mutation p.P91H 0.44 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-62-A46O-01 13 108518883 108518883 G C FAM155A Missense_Mutation p.A21G 0.60 deleterious(0.02) probably_damaging(0.994) TCGA-62-A46O-01 13 20577162 20577162 G C ZMYM2 Missense_Mutation p.K340N 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-62-A46O-01 13 21296098 21296098 G T IL17D 3'UTR 0.48 TCGA-62-A46O-01 13 27241707 27241707 G T WASF3 Missense_Mutation p.D108Y 0.43 deleterious(0) probably_damaging(0.992) TCGA-62-A46O-01 13 28578160 28578160 G A FLT3 3'UTR 0.37 TCGA-62-A46O-01 13 32953976 32953976 A T BRCA2 Nonsense_Mutation p.K3015* 0.29 TCGA-62-A46O-01 13 37678586 37678586 C G CSNK1A1L Missense_Mutation p.E270Q 0.37 deleterious_low_confidence(0.05) possibly_damaging(0.765) TCGA-62-A46O-01 13 38357316 38357316 A G TRPC4 Missense_Mutation p.L52P 0.45 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 13 46543485 46543485 C A ZC3H13 Missense_Mutation p.S1065I 0.40 unknown(0) TCGA-62-A46O-01 13 49281497 49281497 G C CYSLTR2 Missense_Mutation p.G182R 0.40 tolerated(0.24) possibly_damaging(0.66) TCGA-62-A46O-01 13 49281743 49281744 CA - CYSLTR2 Frame_Shift_Del p.L266Efs*19 0.26 TCGA-62-A46O-01 13 50051171 50051171 G C SETDB2 Missense_Mutation p.D301H 0.38 deleterious(0) probably_damaging(0.999) TCGA-62-A46O-01 13 52439962 52439962 C A CCDC70 Missense_Mutation p.L150I 0.33 tolerated(0.06) possibly_damaging(0.632) TCGA-62-A46O-01 13 53603157 53603157 C T OLFM4 Silent p.S62S 0.36 TCGA-62-A46O-01 13 64321026 64321026 C G AL445989.1 Missense_Mutation p.S31R 0.40 unknown(0) TCGA-62-A46O-01 14 102391633 102391633 C T PPP2R5C 3'UTR 0.46 TCGA-62-A46O-01 14 106174386 106174386 C G IGHA1 Missense_Mutation p.E135Q 0.20 deleterious(0.01) probably_damaging(0.988) TCGA-62-A46O-01 14 106926209 106926209 G T IGHV3-43 Silent p.A111A 0.87 TCGA-62-A46O-01 14 21794285 21794285 G T RPGRIP1 Missense_Mutation p.R888L 0.63 deleterious(0) possibly_damaging(0.681) TCGA-62-A46O-01 14 22434023 22434023 G T TRAV12-3 Missense_Mutation p.V26L 0.63 deleterious(0.03) possibly_damaging(0.683) TCGA-62-A46O-01 14 23528402 23528402 G C ACIN1 Missense_Mutation p.S1327R 0.75 unknown(0) TCGA-62-A46O-01 14 24044916 24044916 G A JPH4 Missense_Mutation p.R377C 0.29 deleterious(0) possibly_damaging(0.635) TCGA-62-A46O-01 14 31852761 31852761 T C HEATR5A Missense_Mutation p.H228R 0.09 tolerated(0.12) benign(0.012) TCGA-62-A46O-01 14 33684434 33684434 C A NPAS3 Missense_Mutation p.R63S 0.77 deleterious(0) benign(0.353) TCGA-62-A46O-01 14 45642257 45642257 G C FANCM Splice_Site p.X721_splice 0.85 TCGA-62-A46O-01 14 59931127 59931127 A G GPR135 Missense_Mutation p.L273P 0.81 deleterious(0) probably_damaging(0.987) TCGA-62-A46O-01 14 68229448 68229448 C G ZFYVE26 Missense_Mutation p.A2034P 0.30 deleterious(0) possibly_damaging(0.824) TCGA-62-A46O-01 14 70245175 70245175 G C SLC10A1 Missense_Mutation p.A273G 0.75 deleterious(0.01) possibly_damaging(0.574) TCGA-62-A46O-01 14 70490164 70490164 G T SMOC1 Missense_Mutation p.V431L 0.73 tolerated(0.05) benign(0.014) TCGA-62-A46O-01 14 71209291 71209291 C A MAP3K9 Missense_Mutation p.E448D 0.68 deleterious(0) probably_damaging(0.986) TCGA-62-A46O-01 14 86088637 86088637 A T FLRT2 Missense_Mutation p.Q260L 0.71 deleterious(0) probably_damaging(0.989) TCGA-62-A46O-01 14 88652178 88652178 C G KCNK10 Missense_Mutation p.E445Q 0.41 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-62-A46O-01 15 100537735 100537735 C A ADAMTS17 Missense_Mutation p.R884L 0.71 deleterious(0) probably_damaging(0.999) TCGA-62-A46O-01 15 101120802 101120802 C T LINS Missense_Mutation p.M82I 0.19 tolerated(0.27) benign(0.002) TCGA-62-A46O-01 15 101593270 101593270 A G LRRK1 Missense_Mutation p.K1278R 0.57 tolerated(0.44) benign(0.029) TCGA-62-A46O-01 15 101922382 101922382 C A PCSK6 Missense_Mutation p.A482S 0.37 deleterious(0) probably_damaging(0.974) TCGA-62-A46O-01 15 20643874 20643874 G A HERC2P3 RNA 0.27 TCGA-62-A46O-01 15 22368726 22368726 C A OR4M2 Missense_Mutation p.L51I 0.06 tolerated(0.31) benign(0.051) TCGA-62-A46O-01 15 22960872 22960872 G T CYFIP1 Missense_Mutation p.D689Y 0.38 deleterious(0) probably_damaging(0.992) TCGA-62-A46O-01 15 24924299 24924299 C A NPAP1 Silent p.T1095T 0.51 TCGA-62-A46O-01 15 24924361 24924361 T C NPAP1 Missense_Mutation p.V1116A 0.28 tolerated_low_confidence(0.39) benign(0.021) TCGA-62-A46O-01 15 25490644 25490644 T A SNORD115-41 RNA 0.60 TCGA-62-A46O-01 15 31197637 31197637 C T FAN1 Silent p.F257F 0.21 TCGA-62-A46O-01 15 31358376 31358376 G A TRPM1 Silent p.F248F 0.16 TCGA-62-A46O-01 15 35274094 35274094 C A ZNF770 Missense_Mutation p.Q514H 0.25 deleterious(0) probably_damaging(0.999) TCGA-62-A46O-01 15 35529952 35529952 C T ANP32AP1 RNA 0.56 TCGA-62-A46O-01 15 40591092 40591092 G C PLCB2 Missense_Mutation p.R253G 0.51 deleterious(0.01) probably_damaging(0.996) TCGA-62-A46O-01 15 41272348 41272348 G A INO80 3'UTR 0.51 TCGA-62-A46O-01 15 41796625 41796625 C A LTK Missense_Mutation p.R754L 0.35 deleterious_low_confidence(0.02) possibly_damaging(0.668) TCGA-62-A46O-01 15 42150892 42150892 C A SPTBN5 Missense_Mutation p.D2712Y 0.28 probably_damaging(0.971) TCGA-62-A46O-01 15 43483839 43483839 G A CCNDBP1 Missense_Mutation p.D276N 0.40 deleterious(0.01) probably_damaging(1) TCGA-62-A46O-01 15 44890971 44890971 T A SPG11 Silent p.I1250I 0.48 TCGA-62-A46O-01 15 51974715 51974715 C G SCG3 Missense_Mutation p.D28E 0.60 deleterious_low_confidence(0.04) benign(0.034) TCGA-62-A46O-01 15 52155205 52155205 G T TMOD3 Nonsense_Mutation p.E42* 0.40 TCGA-62-A46O-01 15 54025290 54025290 G A WDR72 Silent p.S19S 0.12 TCGA-62-A46O-01 15 64452333 64452333 C A PPIB Nonsense_Mutation p.G105* 0.62 TCGA-62-A46O-01 15 64669084 64669084 C A KIAA0101 Missense_Mutation p.G50W 0.56 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 15 65209590 65209590 C A ANKDD1A Silent p.G48G 0.21 TCGA-62-A46O-01 15 65702623 65702623 C A IGDCC4 Missense_Mutation p.Q152H 0.19 deleterious(0.05) benign(0.128) TCGA-62-A46O-01 15 66857109 66857109 G T LCTL Missense_Mutation p.P63T 0.49 tolerated(0.56) possibly_damaging(0.574) TCGA-62-A46O-01 15 72324907 72324907 G A MYO9A Missense_Mutation p.A288V 0.24 deleterious(0) benign(0.029) TCGA-62-A46O-01 15 74707046 74707046 T A SEMA7A Missense_Mutation p.Q379L 0.17 deleterious(0.01) possibly_damaging(0.873) TCGA-62-A46O-01 15 75980117 75980117 C A CSPG4 Missense_Mutation p.G1097W 0.57 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 15 80867376 80867376 G T ARNT2 Missense_Mutation p.V480L 0.24 tolerated(1) benign(0.13) TCGA-62-A46O-01 15 81615291 81615291 T C STARD5 Splice_Site p.X34_splice 0.14 TCGA-62-A46O-01 15 83328177 83328177 G A AP3B2 3'UTR 0.27 TCGA-62-A46O-01 15 85198534 85198534 G T NMB Silent p.T144T 0.21 TCGA-62-A46O-01 15 88420224 88420224 T C NTRK3 Missense_Mutation p.Y821C 0.12 deleterious(0) benign(0.014) TCGA-62-A46O-01 15 89392775 89392775 C A ACAN Silent p.A613A 0.21 TCGA-62-A46O-01 15 89398273 89398273 C T ACAN Silent p.P819P 0.56 TCGA-62-A46O-01 15 91811691 91811691 G T SV2B Missense_Mutation p.W410L 0.21 deleterious(0) probably_damaging(0.98) TCGA-62-A46O-01 15 92987900 92987900 G T ST8SIA2 Missense_Mutation p.D195Y 0.22 probably_damaging(0.999) TCGA-62-A46O-01 15 94884137 94884137 G A MCTP2 Missense_Mutation p.G318D 0.50 deleterious(0.03) benign(0.008) TCGA-62-A46O-01 16 1032238 1032238 A G SOX8 Missense_Mutation p.M106V 0.55 deleterious(0) probably_damaging(0.989) TCGA-62-A46O-01 16 11857450 11857450 T A ZC3H7A Missense_Mutation p.Q629L 0.62 tolerated(0.6) benign(0.013) TCGA-62-A46O-01 16 1536528 1536528 C A PTX4 Silent p.V278V 0.27 TCGA-62-A46O-01 16 1551498 1551498 G T TELO2 Silent p.A453A 0.30 TCGA-62-A46O-01 16 15841519 15841519 G T MYH11 Silent p.G780G 0.51 TCGA-62-A46O-01 16 162775 162775 C A NPRL3 Splice_Site p.X132_splice 0.40 TCGA-62-A46O-01 16 16297293 16297293 G A ABCC6 Silent p.F324F 0.25 TCGA-62-A46O-01 16 20348614 20348614 G C UMOD Missense_Mutation p.P580R 0.45 deleterious(0) probably_damaging(0.991) TCGA-62-A46O-01 16 20373761 20373761 G C PDILT Missense_Mutation p.P461A 0.30 deleterious(0.02) probably_damaging(1) TCGA-62-A46O-01 16 20451149 20451149 C A ACSM5 Missense_Mutation p.P522T 0.48 deleterious(0.01) benign(0.086) TCGA-62-A46O-01 16 21063165 21063165 G A DNAH3 Missense_Mutation p.S1355F 0.22 tolerated(0.12) benign(0.042) TCGA-62-A46O-01 16 22545805 22545805 G C NPIPB5 Missense_Mutation p.G501R 0.07 tolerated_low_confidence(0.34) probably_damaging(0.998) TCGA-62-A46O-01 16 23085047 23085047 C A USP31 Silent p.V777V 0.48 TCGA-62-A46O-01 16 31142140 31142140 G A KAT8 Missense_Mutation p.G411S 0.31 deleterious(0) probably_damaging(0.991) TCGA-62-A46O-01 16 31157277 31157277 C G PRSS36 Splice_Site p.X185_splice 0.29 TCGA-62-A46O-01 16 31426312 31426312 T A ITGAD Silent p.S761S 0.25 TCGA-62-A46O-01 16 31471167 31471167 G T ARMC5 Missense_Mutation p.G108C 0.63 tolerated_low_confidence(0.09) unknown(0) TCGA-62-A46O-01 16 3299583 3299583 G - MEFV Frame_Shift_Del p.Q370Sfs*10 0.30 TCGA-62-A46O-01 16 332518 332518 C A ARHGDIG Silent p.R156R 0.19 TCGA-62-A46O-01 16 52473611 52473611 C A TOX3 Missense_Mutation p.M419I 0.80 tolerated_low_confidence(0.17) benign(0.028) TCGA-62-A46O-01 16 58220672 58220672 A T CSNK2A2 Missense_Mutation p.V102E 0.80 deleterious(0) probably_damaging(0.993) TCGA-62-A46O-01 16 58220674 58220674 A C CSNK2A2 Silent p.T101T 0.81 TCGA-62-A46O-01 16 65026902 65026902 C T CDH11 Missense_Mutation p.D187N 0.82 deleterious(0) probably_damaging(0.991) TCGA-62-A46O-01 16 70010583 70010583 G T PDXDC2P RNA 0.36 TCGA-62-A46O-01 16 70986452 70986452 G C HYDIN Missense_Mutation p.L2135V 0.75 probably_damaging(0.953) TCGA-62-A46O-01 16 746839 746839 C T FBXL16 Silent p.A189A 0.23 TCGA-62-A46O-01 16 75448534 75448534 C T CFDP1 Missense_Mutation p.E42K 0.82 tolerated(0.16) benign(0.078) TCGA-62-A46O-01 16 81388230 81388230 A C GAN Missense_Mutation p.E168A 0.84 tolerated(0.05) benign(0.355) TCGA-62-A46O-01 16 85106571 85106571 G T KIAA0513 Missense_Mutation p.R157L 0.76 deleterious(0.05) probably_damaging(0.999) TCGA-62-A46O-01 16 85141550 85141550 C T FAM92B Missense_Mutation p.E110K 0.83 deleterious(0.01) probably_damaging(0.924) TCGA-62-A46O-01 17 10231254 10231254 G T MYH13 Silent p.R874R 0.75 TCGA-62-A46O-01 17 10551906 10551906 T A MYH3 Nonsense_Mutation p.K235* 0.77 TCGA-62-A46O-01 17 11696965 11696965 T A DNAH9 Missense_Mutation p.L2736H 0.67 possibly_damaging(0.447) TCGA-62-A46O-01 17 12043179 12043179 G C MAP2K4 Missense_Mutation p.R355T 0.75 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 17 13399775 13399775 G T HS3ST3A1 Silent p.A320A 0.31 TCGA-62-A46O-01 17 17120384 17120384 C A FLCN Missense_Mutation p.R392L 0.21 deleterious(0.01) benign(0.039) TCGA-62-A46O-01 17 18541184 18541184 C T TBC1D28 Missense_Mutation p.G164R 0.47 tolerated(0.08) possibly_damaging(0.573) TCGA-62-A46O-01 17 20358644 20358644 G T LGALS9B Missense_Mutation p.P171Q 0.19 tolerated(0.11) possibly_damaging(0.865) TCGA-62-A46O-01 17 20805831 20805831 G C RP11-344E13.3 RNA 0.62 TCGA-62-A46O-01 17 21731206 21731206 G T UBBP4 Intron 0.55 TCGA-62-A46O-01 17 2203259 2203259 C A SMG6 Missense_Mutation p.G263V 0.78 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-62-A46O-01 17 26906191 26906191 T A SPAG5 Nonsense_Mutation p.K1029* 0.58 TCGA-62-A46O-01 17 27993912 27993912 A T SSH2 Silent p.P308P 0.37 TCGA-62-A46O-01 17 33680924 33680924 C T SLFN11 Silent p.L451L 0.35 TCGA-62-A46O-01 17 3432260 3432260 C A TRPV3 Silent p.P424P 0.82 TCGA-62-A46O-01 17 35734819 35734819 C A C17orf78 Missense_Mutation p.L21I 0.40 tolerated(0.16) benign(0.046) TCGA-62-A46O-01 17 3583002 3583002 G T P2RX5 Missense_Mutation p.P381T 0.70 deleterious_low_confidence(0.04) benign(0.037) TCGA-62-A46O-01 17 37618986 37618986 G A CDK12 Missense_Mutation p.R221K 0.38 unknown(0) TCGA-62-A46O-01 17 38171996 38171996 C G CSF3 Silent p.T31T 0.50 TCGA-62-A46O-01 17 38320071 38320071 G A CASC3 Missense_Mutation p.E375K 0.42 tolerated_low_confidence(0.75) benign(0.055) TCGA-62-A46O-01 17 38978439 38978439 A G KRT10 Silent p.G133G 0.11 TCGA-62-A46O-01 17 39316756 39316756 G T KRTAP4-4 Missense_Mutation p.P63H 0.39 unknown(0) TCGA-62-A46O-01 17 40847736 40847736 C T CNTNAP1 Missense_Mutation p.R1064W 0.34 deleterious(0.02) possibly_damaging(0.853) TCGA-62-A46O-01 17 40940344 40940344 G T WNK4 Silent p.V653V 0.29 TCGA-62-A46O-01 17 41019892 41019892 C T AOC4P RNA 0.39 TCGA-62-A46O-01 17 41341693 41341693 C T NBR1 Missense_Mutation p.S190F 0.52 tolerated(0.17) benign(0.127) TCGA-62-A46O-01 17 42452091 42452091 C A ITGA2B Missense_Mutation p.W960L 0.32 tolerated(0.28) benign(0.275) TCGA-62-A46O-01 17 42476210 42476210 C T GPATCH8 Missense_Mutation p.D1079N 0.34 tolerated(0.09) unknown(0) TCGA-62-A46O-01 17 44249276 44249276 C A KANSL1 Silent p.L78L 0.31 TCGA-62-A46O-01 17 46257476 46257476 C A SKAP1 Missense_Mutation p.V256L 0.38 tolerated(0.73) benign(0.002) TCGA-62-A46O-01 17 4688711 4688711 G A VMO1 Silent p.G185G 0.10 TCGA-62-A46O-01 17 4863609 4863609 C T SPAG7 Missense_Mutation p.D83N 0.86 deleterious(0) probably_damaging(0.985) TCGA-62-A46O-01 17 48940293 48940293 C G TOB1 3'UTR 0.41 TCGA-62-A46O-01 17 48941273 48941273 G A TOB1 Missense_Mutation p.L36F 0.14 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 17 51901909 51901909 C G KIF2B Missense_Mutation p.D505E 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-62-A46O-01 17 52990140 52990140 A T TOM1L1 Silent p.P112P 0.46 TCGA-62-A46O-01 17 55184117 55184117 C T AKAP1 Missense_Mutation p.P431L 0.43 tolerated(0.2) benign(0.005) TCGA-62-A46O-01 17 55752411 55752411 G T MSI2 Missense_Mutation p.S290I 0.41 deleterious(0.02) benign(0.282) TCGA-62-A46O-01 17 58506911 58506911 C A C17orf64 Silent p.V206V 0.26 TCGA-62-A46O-01 17 61759152 61759152 C T MAP3K3 Missense_Mutation p.P208S 0.09 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 17 66980278 66980278 C - ABCA9 Frame_Shift_Del p.G1473Afs*4 0.26 TCGA-62-A46O-01 17 67081770 67081770 C A ABCA6 Missense_Mutation p.G1342V 0.38 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 17 7100242 7100242 T A DLG4 Missense_Mutation p.D349V 0.89 deleterious(0) probably_damaging(0.97) TCGA-62-A46O-01 17 72937897 72937897 G T OTOP3 Missense_Mutation p.W161C 0.35 deleterious(0) probably_damaging(0.999) TCGA-62-A46O-01 17 73566135 73566135 G T LLGL2 Missense_Mutation p.W558L 0.35 deleterious(0) probably_damaging(0.999) TCGA-62-A46O-01 17 73664626 73664626 A G SAP30BP Missense_Mutation p.Y46C 0.37 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-62-A46O-01 17 7579311 7579311 C A TP53 Splice_Site p.X125_splice 0.66 TCGA-62-A46O-01 17 76497140 76497140 G T DNAH17-AS1 3'UTR 0.46 TCGA-62-A46O-01 17 80373371 80373371 C G OGFOD3 Silent p.G69G 0.46 TCGA-62-A46O-01 18 12479841 12479841 G A SPIRE1 Missense_Mutation p.L421F 0.82 tolerated(0.06) benign(0.185) TCGA-62-A46O-01 18 13645128 13645128 C A LDLRAD4 Silent p.I131I 0.88 TCGA-62-A46O-01 18 18586686 18586686 C T ROCK1 Missense_Mutation p.E538K 0.83 deleterious(0.01) possibly_damaging(0.576) TCGA-62-A46O-01 18 20573238 20573238 G C RBBP8 Missense_Mutation p.G483A 0.68 tolerated(0.11) possibly_damaging(0.853) TCGA-62-A46O-01 18 28909950 28909950 G C DSG1 Silent p.V156V 0.86 TCGA-62-A46O-01 18 28993288 28993288 T A DSG4 Nonsense_Mutation p.C970* 0.76 TCGA-62-A46O-01 18 42530616 42530617 GG T SETBP1 Frame_Shift_Del p.L437Ffs*7 0.30 TCGA-62-A46O-01 18 5416056 5416056 T A EPB41L3 Missense_Mutation p.N610Y 0.62 deleterious(0.01) possibly_damaging(0.724) TCGA-62-A46O-01 18 55104056 55104056 G T ONECUT2 Missense_Mutation p.D370Y 0.65 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 18 6887159 6887159 G A ARHGAP28 Missense_Mutation p.G327E 0.22 tolerated(0.18) benign(0.012) TCGA-62-A46O-01 18 76753602 76753602 G T SALL3 Silent p.A537A 0.88 TCGA-62-A46O-01 18 77894149 77894149 G T ADNP2 Missense_Mutation p.A285S 0.70 tolerated(0.73) benign(0.225) TCGA-62-A46O-01 19 10096561 10096561 C A COL5A3 Missense_Mutation p.G788V 0.79 unknown(0) TCGA-62-A46O-01 19 10096562 10096562 C A COL5A3 Missense_Mutation p.G788W 0.79 unknown(0) TCGA-62-A46O-01 19 10421534 10421534 C A FDX1L Missense_Mutation p.E130D 0.93 tolerated(1) benign(0) TCGA-62-A46O-01 19 10600329 10600329 C A KEAP1 Missense_Mutation p.G509V 0.80 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 19 11121055 11121055 A G SMARCA4 Splice_Site p.X708_splice 0.71 TCGA-62-A46O-01 19 12637860 12637860 T C ZNF564 Silent p.T354T 0.75 TCGA-62-A46O-01 19 12866459 12866459 C A BEST2 Missense_Mutation p.L249M 0.78 deleterious(0.02) probably_damaging(0.981) TCGA-62-A46O-01 19 14199296 14199296 T A SAMD1 Missense_Mutation p.E411V 0.71 deleterious(0) probably_damaging(0.999) TCGA-62-A46O-01 19 14749075 14749075 C A EMR3 Silent p.V442V 0.62 TCGA-62-A46O-01 19 15067354 15067354 C G SLC1A6 Missense_Mutation p.R368P 0.56 deleterious(0.01) benign(0.137) TCGA-62-A46O-01 19 17306108 17306108 C T MYO9B Missense_Mutation p.P1291L 0.76 deleterious(0.01) possibly_damaging(0.842) TCGA-62-A46O-01 19 17452465 17452465 G T GTPBP3 Nonsense_Mutation p.E510* 0.76 TCGA-62-A46O-01 19 19453457 19453457 G A MAU2 Silent p.L283L 0.77 TCGA-62-A46O-01 19 20230091 20230091 G A ZNF90 Silent p.L576L 0.82 TCGA-62-A46O-01 19 21910334 21910334 G A ZNF100 Silent p.P260P 0.68 TCGA-62-A46O-01 19 23543765 23543765 G A ZNF91 Silent p.T672T 0.79 TCGA-62-A46O-01 19 3009606 3009606 G C TLE2 Missense_Mutation p.S369R 0.12 tolerated(0.1) possibly_damaging(0.486) TCGA-62-A46O-01 19 3179349 3179349 C T S1PR4 Silent p.L187L 0.83 TCGA-62-A46O-01 19 33647391 33647391 G T WDR88 Missense_Mutation p.V314L 0.81 deleterious(0.02) possibly_damaging(0.844) TCGA-62-A46O-01 19 34949813 34949813 T C UBA2 Missense_Mutation p.L462P 0.27 tolerated(0.14) benign(0.162) TCGA-62-A46O-01 19 35786760 35786760 G C MAG Silent p.L97L 0.83 TCGA-62-A46O-01 19 36036734 36036734 G T TMEM147 Intron 0.82 TCGA-62-A46O-01 19 36047953 36047953 C A ATP4A Silent p.P577P 0.09 TCGA-62-A46O-01 19 37203335 37203335 G T ZNF567 5'UTR 0.94 TCGA-62-A46O-01 19 37619293 37619293 G A ZNF420 Missense_Mutation p.R467Q 0.86 deleterious(0.02) benign(0.158) TCGA-62-A46O-01 19 37870072 37870072 G T ZNF527 Missense_Mutation p.W28C 0.06 deleterious(0) probably_damaging(0.998) TCGA-62-A46O-01 19 38104153 38104153 A T ZNF540 Missense_Mutation p.N658Y 0.89 deleterious(0) benign(0.094) TCGA-62-A46O-01 19 38956759 38956759 G T RYR1 Missense_Mutation p.A967S 0.87 possibly_damaging(0.656) TCGA-62-A46O-01 19 39003042 39003042 T A RYR1 Missense_Mutation p.Y3131N 0.07 benign(0.019) TCGA-62-A46O-01 19 39010075 39010075 C T RYR1 Missense_Mutation p.R3414C 0.17 benign(0.256) TCGA-62-A46O-01 19 39207875 39207875 G C ACTN4 Missense_Mutation p.E354D 0.42 deleterious(0) probably_damaging(0.96) TCGA-62-A46O-01 19 39665598 39665598 G A PAK4 Missense_Mutation p.E376K 0.40 tolerated(0.29) possibly_damaging(0.713) TCGA-62-A46O-01 19 39691014 39691014 G A NCCRP1 Missense_Mutation p.V193I 0.14 tolerated(0.32) probably_damaging(0.954) TCGA-62-A46O-01 19 3982316 3982316 C A EEF2 Missense_Mutation p.G240V 0.86 tolerated(0.17) possibly_damaging(0.809) TCGA-62-A46O-01 19 40580817 40580817 C G ZNF780A Missense_Mutation p.R512T 0.06 tolerated(0.73) benign(0.01) TCGA-62-A46O-01 19 41076607 41076607 T A SPTBN4 Missense_Mutation p.L2431H 0.85 deleterious(0) probably_damaging(0.963) TCGA-62-A46O-01 19 41860617 41860617 G A B9D2 Silent p.G172G 0.66 TCGA-62-A46O-01 19 42861727 42861727 C G MEGF8 Missense_Mutation p.P1601A 0.22 deleterious(0.03) possibly_damaging(0.886) TCGA-62-A46O-01 19 42866672 42866672 C T MEGF8 Missense_Mutation p.A1927V 0.22 tolerated(0.96) benign(0.363) TCGA-62-A46O-01 19 42930935 42930935 A G LIPE Missense_Mutation p.S123P 0.05 tolerated_low_confidence(0.1) benign(0.007) TCGA-62-A46O-01 19 42930938 42930938 C T LIPE Missense_Mutation p.E122K 0.05 tolerated_low_confidence(0.06) benign(0.084) TCGA-62-A46O-01 19 43373185 43373185 C T PSG1 Silent p.P237P 0.15 TCGA-62-A46O-01 19 43522990 43522990 G A PSG11 Missense_Mutation p.P214L 0.73 deleterious(0.04) probably_damaging(1) TCGA-62-A46O-01 19 43763010 43763010 G A PSG9 Silent p.L329L 0.20 TCGA-62-A46O-01 19 43920074 43920075 GG - TEX101 Frame_Shift_Del p.G20Nfs*43 0.09 TCGA-62-A46O-01 19 44223855 44223855 A T IRGC Missense_Mutation p.Y382F 0.19 deleterious(0.04) benign(0.408) TCGA-62-A46O-01 19 45716518 45716518 C T EXOC3L2 Missense_Mutation p.E347K 0.16 deleterious(0.04) benign(0.159) TCGA-62-A46O-01 19 46216293 46216293 G - FBXO46 Frame_Shift_Del p.P154Lfs*46 0.18 TCGA-62-A46O-01 19 46216298 46216298 G T FBXO46 Silent p.G152G 0.19 TCGA-62-A46O-01 19 46357678 46357678 C A SYMPK Missense_Mutation p.G26C 0.16 tolerated(0.13) benign(0.003) TCGA-62-A46O-01 19 46733711 46733711 T A IGFL1 Missense_Mutation p.M87K 0.77 tolerated(0.34) benign(0.142) TCGA-62-A46O-01 19 49652572 49652572 G A PPFIA3 Missense_Mutation p.R1115Q 0.29 tolerated(0.1) possibly_damaging(0.782) TCGA-62-A46O-01 19 50099887 50099887 G T PRR12 Silent p.P765P 0.69 TCGA-62-A46O-01 19 50158042 50158042 C - SCAF1 Frame_Shift_Del p.T1181Pfs*28 0.73 TCGA-62-A46O-01 19 51274366 51274366 C - GPR32 Frame_Shift_Del p.A171Pfs*7 0.46 TCGA-62-A46O-01 19 51465018 51465018 G T KLK6 Nonsense_Mutation p.Y188* 0.70 TCGA-62-A46O-01 19 52004819 52004819 C A SIGLEC12 Missense_Mutation p.D57Y 0.79 tolerated(1) probably_damaging(0.942) TCGA-62-A46O-01 19 53645322 53645322 T C ZNF347 Silent p.K254K 0.80 TCGA-62-A46O-01 19 54485520 54485520 G A CACNG8 Missense_Mutation p.R232H 0.83 deleterious(0) probably_damaging(0.966) TCGA-62-A46O-01 19 54496075 54496075 C A CACNG6 5'UTR 0.87 TCGA-62-A46O-01 19 56244032 56244033 TG - NLRP9 Frame_Shift_Del p.N388Kfs*34 0.46 TCGA-62-A46O-01 19 56329360 56329360 C A NLRP11 Nonsense_Mutation p.E61* 0.84 TCGA-62-A46O-01 19 57328689 57328689 C T PEG3 Missense_Mutation p.G374D 0.83 deleterious(0) probably_damaging(0.935) TCGA-62-A46O-01 19 57642009 57642009 G T USP29 Missense_Mutation p.D656Y 0.90 deleterious(0) probably_damaging(0.986) TCGA-62-A46O-01 19 59021275 59021275 C A SLC27A5 Silent p.T332T 0.81 TCGA-62-A46O-01 19 757689 757689 A G MISP Missense_Mutation p.K248R 0.88 tolerated(0.42) benign(0.015) TCGA-62-A46O-01 19 7795276 7795276 C T CLEC4G Missense_Mutation p.E147K 0.81 deleterious(0) probably_damaging(0.999) TCGA-62-A46O-01 19 852341 852341 C A ELANE Missense_Mutation p.R5S 0.75 tolerated_low_confidence(0.1) benign(0.006) TCGA-62-A46O-01 19 9024163 9024163 C G MUC16 Missense_Mutation p.G12370A 0.79 benign(0.275) TCGA-62-A46O-01 19 9062812 9062812 C T MUC16 Missense_Mutation p.E8212K 0.72 unknown(0) TCGA-62-A46O-01 1 101198057 101198057 C A VCAM1 Missense_Mutation p.Q537K 0.39 tolerated(0.22) benign(0.016) TCGA-62-A46O-01 1 103491088 103491088 C A COL11A1 Missense_Mutation p.G327W 0.40 probably_damaging(0.981) TCGA-62-A46O-01 1 11008659 11008659 C A C1orf127 Silent p.V511V 0.24 TCGA-62-A46O-01 1 110302335 110302335 C T EPS8L3 Missense_Mutation p.D74N 0.30 deleterious(0.04) benign(0.323) TCGA-62-A46O-01 1 110553964 110553964 G A AHCYL1 Missense_Mutation p.E121K 0.35 tolerated(0.07) benign(0.382) TCGA-62-A46O-01 1 110884036 110884036 C T RBM15 Missense_Mutation p.S670F 0.47 deleterious(0.01) benign(0.424) TCGA-62-A46O-01 1 11345711 11345711 C T UBIAD1 Silent p.F180F 0.57 TCGA-62-A46O-01 1 114680653 114680653 G T SYT6 Missense_Mutation p.L94M 0.38 tolerated(0.1) benign(0.383) TCGA-62-A46O-01 1 115124237 115124237 G A BCAS2 5'UTR 0.33 TCGA-62-A46O-01 1 115261262 115261262 C G CSDE1 Missense_Mutation p.R820P 0.12 deleterious(0) possibly_damaging(0.77) TCGA-62-A46O-01 1 118449205 118449205 C G GDAP2 Splice_Site p.X187_splice 0.47 TCGA-62-A46O-01 1 118574344 118574344 C G SPAG17 Missense_Mutation p.E1194Q 0.45 tolerated(0.05) probably_damaging(0.992) TCGA-62-A46O-01 1 1309274 1309274 G A AURKAIP1 Silent p.F169F 0.33 TCGA-62-A46O-01 1 13109233 13109233 C T PRAMEF23 RNA 0.37 TCGA-62-A46O-01 1 13936943 13936943 G C PDPN Missense_Mutation p.S164T 0.44 tolerated(0.28) benign(0.007) TCGA-62-A46O-01 1 144931680 144931680 C A PDE4DIP Intron 0.14 TCGA-62-A46O-01 1 145459707 145459707 T C POLR3GL Silent p.L67L 0.54 TCGA-62-A46O-01 1 145528567 145528567 C A ITGA10 Intron 0.59 TCGA-62-A46O-01 1 145563039 145563039 A T ANKRD35 Silent p.A909A 0.21 TCGA-62-A46O-01 1 151109458 151109458 A C SEMA6C Silent p.L283L 0.18 TCGA-62-A46O-01 1 152327855 152327855 G A FLG2 Nonsense_Mutation p.Q803* 0.20 TCGA-62-A46O-01 1 152681578 152681578 G T LCE4A Missense_Mutation p.Q9H 0.66 deleterious_low_confidence(0.02) unknown(0) TCGA-62-A46O-01 1 153333232 153333232 G A S100A9 Nonsense_Mutation p.W88* 0.28 TCGA-62-A46O-01 1 15382690 15382690 A T KAZN Missense_Mutation p.Q277L 0.38 tolerated(0.06) benign(0.01) TCGA-62-A46O-01 1 154918919 154918919 C A PBXIP1 Missense_Mutation p.D411Y 0.53 deleterious(0) probably_damaging(0.986) TCGA-62-A46O-01 1 154919935 154919935 G A PBXIP1 Silent p.A276A 0.55 TCGA-62-A46O-01 1 154962880 154962880 G T FLAD1 Missense_Mutation p.R477L 0.32 tolerated(0.16) benign(0.009) TCGA-62-A46O-01 1 155451143 155451143 G C ASH1L Missense_Mutation p.F506L 0.23 deleterious_low_confidence(0.04) benign(0.124) TCGA-62-A46O-01 1 155735390 155735390 C T GON4L Missense_Mutation p.V1292I 0.16 tolerated_low_confidence(0.43) benign(0) TCGA-62-A46O-01 1 155838152 155838152 G T SYT11 Missense_Mutation p.S144I 0.25 tolerated(0.1) probably_damaging(0.997) TCGA-62-A46O-01 1 156498364 156498364 T A IQGAP3 Missense_Mutation p.Y1537F 0.42 deleterious(0) probably_damaging(0.999) TCGA-62-A46O-01 1 156617352 156617352 T G BCAN Silent p.S173S 0.57 TCGA-62-A46O-01 1 156883222 156883222 C T PEAR1 Missense_Mutation p.R851W 0.52 deleterious(0.02) probably_damaging(0.964) TCGA-62-A46O-01 1 157804439 157804439 C A CD5L Missense_Mutation p.W159L 0.27 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 1 158063156 158063156 G C KIRREL Missense_Mutation p.G500A 0.54 tolerated(0.16) benign(0.129) TCGA-62-A46O-01 1 158298764 158298764 T C CD1B Missense_Mutation p.I309M 0.38 tolerated(0.21) benign(0.013) TCGA-62-A46O-01 1 158583517 158583517 G C SPTA1 Missense_Mutation p.P2328R 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-62-A46O-01 1 158606438 158606438 G T SPTA1 Missense_Mutation p.A1768D 0.36 deleterious(0.03) possibly_damaging(0.83) TCGA-62-A46O-01 1 158670292 158670292 A C OR6K2 Missense_Mutation p.L51V 0.54 tolerated(0.07) benign(0.023) TCGA-62-A46O-01 1 158725600 158725600 T A OR6K6 Missense_Mutation p.F332Y 0.43 tolerated(0.07) benign(0.015) TCGA-62-A46O-01 1 160187465 160187465 C A DCAF8 Missense_Mutation p.A725S 0.46 tolerated(0.64) benign(0.019) TCGA-62-A46O-01 1 160325484 160325484 T C NCSTN Silent p.N464N 0.47 TCGA-62-A46O-01 1 160461113 160461113 G A SLAMF6 Missense_Mutation p.H150Y 0.26 tolerated(0.08) benign(0.048) TCGA-62-A46O-01 1 160783585 160783585 C A LY9 Missense_Mutation p.S205Y 0.54 deleterious(0) probably_damaging(0.983) TCGA-62-A46O-01 1 162351690 162351690 G C RP11-565P22.6 Missense_Mutation p.G109A 0.41 tolerated(0.06) benign(0.229) TCGA-62-A46O-01 1 16259230 16259230 A G SPEN Silent p.L2165L 0.32 TCGA-62-A46O-01 1 16459672 16459672 C T EPHA2 Intron 0.55 TCGA-62-A46O-01 1 165182890 165182891 - T LMX1A Frame_Shift_Ins p.P220Afs*118 0.40 TCGA-62-A46O-01 1 167358827 167358827 A T POU2F1 Silent p.P272P 0.54 TCGA-62-A46O-01 1 17046489 17046489 G T ESPNP RNA 0.12 TCGA-62-A46O-01 1 171752916 171752916 G C METTL13 Missense_Mutation p.E64Q 0.24 deleterious(0.03) possibly_damaging(0.767) TCGA-62-A46O-01 1 172628547 172628547 C G FASLG Missense_Mutation p.P69R 0.47 tolerated(0.35) benign(0.006) TCGA-62-A46O-01 1 175106008 175106008 T A TNN Missense_Mutation p.V1160E 0.24 deleterious(0) probably_damaging(0.975) TCGA-62-A46O-01 1 175334312 175334312 G C TNR Missense_Mutation p.N807K 0.48 tolerated(1) possibly_damaging(0.61) TCGA-62-A46O-01 1 175365698 175365698 T A TNR Missense_Mutation p.T408S 0.59 tolerated(1) benign(0.002) TCGA-62-A46O-01 1 176526309 176526309 G T PAPPA2 Missense_Mutation p.R284L 0.60 deleterious(0) possibly_damaging(0.903) TCGA-62-A46O-01 1 176863775 176863775 G T ASTN1 Missense_Mutation p.P955T 0.21 tolerated(0.12) benign(0.054) TCGA-62-A46O-01 1 181725098 181725098 C A CACNA1E Missense_Mutation p.N1332K 0.50 tolerated(0.4) probably_damaging(0.932) TCGA-62-A46O-01 1 185962392 185962392 C A HMCN1 Silent p.A1152A 0.20 TCGA-62-A46O-01 1 19018254 19018254 G C PAX7 Missense_Mutation p.R198P 0.25 tolerated(0.16) possibly_damaging(0.481) TCGA-62-A46O-01 1 192150508 192150508 A T RGS18 Nonsense_Mutation p.K124* 0.33 TCGA-62-A46O-01 1 19439380 19439380 C A UBR4 Intron 0.47 TCGA-62-A46O-01 1 19578120 19578120 C T MRTO4 5'UTR 0.39 TCGA-62-A46O-01 1 196887427 196887427 G T CFHR4 Missense_Mutation p.G542V 0.18 deleterious(0) probably_damaging(0.999) TCGA-62-A46O-01 1 201332529 201332529 C G TNNT2 Missense_Mutation p.E155D 0.54 deleterious(0.03) possibly_damaging(0.594) TCGA-62-A46O-01 1 201437799 201437799 T A PHLDA3 Missense_Mutation p.Q39L 0.20 tolerated(0.84) benign(0.173) TCGA-62-A46O-01 1 202574833 202574833 G T SYT2 Missense_Mutation p.P23H 0.50 deleterious(0.01) benign(0.004) TCGA-62-A46O-01 1 202574844 202574844 G T SYT2 Silent p.T19T 0.58 TCGA-62-A46O-01 1 203689760 203689760 G C ATP2B4 Silent p.V830V 0.15 TCGA-62-A46O-01 1 204006458 204006458 A T LINC00303 RNA 0.44 TCGA-62-A46O-01 1 204913514 204913514 C G NFASC Missense_Mutation p.A24G 0.42 deleterious(0.02) possibly_damaging(0.889) TCGA-62-A46O-01 1 204943866 204943866 C A NFASC Silent p.I491I 0.32 TCGA-62-A46O-01 1 204943867 204943867 C A NFASC Missense_Mutation p.R492S 0.34 tolerated(0.05) possibly_damaging(0.855) TCGA-62-A46O-01 1 204957825 204957825 G T NFASC Silent p.T886T 0.43 TCGA-62-A46O-01 1 205031691 205031691 G A CNTN2 Missense_Mutation p.V412M 0.48 deleterious(0) probably_damaging(0.967) TCGA-62-A46O-01 1 207790119 207790119 C A CR1 Silent p.A2287A 0.40 TCGA-62-A46O-01 1 20964402 20964402 G A PINK1 Missense_Mutation p.R152Q 0.46 tolerated(0.15) benign(0.02) TCGA-62-A46O-01 1 209956701 209956701 C A C1orf74 Silent p.L93L 0.44 TCGA-62-A46O-01 1 212792922 212792922 G T ATF3 3'UTR 0.40 TCGA-62-A46O-01 1 216062177 216062177 G T USH2A Nonsense_Mutation p.S2605* 0.47 TCGA-62-A46O-01 1 21889729 21889729 A T ALPL Missense_Mutation p.T142S 0.26 tolerated(0.21) benign(0.208) TCGA-62-A46O-01 1 21936134 21936134 A G RAP1GAP Silent p.S399S 0.39 TCGA-62-A46O-01 1 221912518 221912518 C A DUSP10 Missense_Mutation p.G190V 0.46 deleterious(0) probably_damaging(0.935) TCGA-62-A46O-01 1 222713535 222713535 G T HHIPL2 Missense_Mutation p.R423S 0.40 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 1 223402656 223402656 C A SUSD4 Nonsense_Mutation p.G267* 0.34 TCGA-62-A46O-01 1 226574074 226574074 C A PARP1 Nonsense_Mutation p.E263* 0.37 TCGA-62-A46O-01 1 228493055 228493055 A T OBSCN Missense_Mutation p.Q4833L 0.46 possibly_damaging(0.818) TCGA-62-A46O-01 1 228602674 228602674 T C TRIM17 Missense_Mutation p.N34D 0.38 deleterious(0) probably_damaging(0.999) TCGA-62-A46O-01 1 229730442 229730442 C A TAF5L Missense_Mutation p.G458W 0.43 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 1 229794938 229794938 G T URB2 Missense_Mutation p.R1490L 0.38 deleterious(0.03) probably_damaging(0.992) TCGA-62-A46O-01 1 2339978 2339978 G A PEX10 Silent p.L171L 0.57 TCGA-62-A46O-01 1 236631573 236631573 C A EDARADD Missense_Mutation p.P88T 0.47 tolerated(0.23) benign(0.013) TCGA-62-A46O-01 1 237798272 237798272 C A RYR2 Missense_Mutation p.R2258S 0.27 possibly_damaging(0.84) TCGA-62-A46O-01 1 237802396 237802396 G A RYR2 Missense_Mutation p.G2337E 0.29 probably_damaging(0.994) TCGA-62-A46O-01 1 237819155 237819155 C A RYR2 Missense_Mutation p.P2667H 0.55 probably_damaging(0.962) TCGA-62-A46O-01 1 24021163 24021163 A T RPL11 Missense_Mutation p.E93V 0.36 deleterious(0.02) possibly_damaging(0.517) TCGA-62-A46O-01 1 240656703 240656703 G A GREM2 Missense_Mutation p.R25W 0.45 tolerated(0.09) probably_damaging(0.997) TCGA-62-A46O-01 1 242035581 242035581 G T EXO1 Splice_Site p.X505_splice 0.36 TCGA-62-A46O-01 1 24419551 24419551 G A MYOM3 Missense_Mutation p.R326C 0.52 tolerated(0.14) benign(0.032) TCGA-62-A46O-01 1 246754854 246754854 A T CNST 5'UTR 0.34 TCGA-62-A46O-01 1 247608058 247608058 C A NLRP3 Silent p.G982G 0.48 TCGA-62-A46O-01 1 247655347 247655347 G T OR2W5 RNA 0.52 TCGA-62-A46O-01 1 247695460 247695460 G C OR2C3 Silent p.T118T 0.43 TCGA-62-A46O-01 1 247752074 247752074 T A OR2G2 Nonsense_Mutation p.L138* 0.36 TCGA-62-A46O-01 1 247752414 247752414 C T OR2G2 Silent p.V251V 0.42 TCGA-62-A46O-01 1 247902674 247902674 G T OR14K1 Missense_Mutation p.G253V 0.23 deleterious(0.04) possibly_damaging(0.502) TCGA-62-A46O-01 1 247978716 247978716 C T OR14A16 Missense_Mutation p.A106T 0.46 tolerated(0.09) possibly_damaging(0.53) TCGA-62-A46O-01 1 248084870 248084870 G A OR2T8 Missense_Mutation p.R184H 0.36 tolerated(0.13) benign(0.177) TCGA-62-A46O-01 1 248263168 248263168 A T OR2L13 Missense_Mutation p.H164L 0.39 deleterious(0.04) possibly_damaging(0.597) TCGA-62-A46O-01 1 248308963 248308963 C A OR2M5 Silent p.R172R 0.45 TCGA-62-A46O-01 1 248436566 248436566 C T OR2T33 Missense_Mutation p.R184H 0.17 tolerated(0.13) benign(0.177) TCGA-62-A46O-01 1 248569800 248569800 G T OR2T1 Missense_Mutation p.A169S 0.39 tolerated(0.24) probably_damaging(0.987) TCGA-62-A46O-01 1 248637245 248637245 C A OR2T3 Silent p.S198S 0.41 TCGA-62-A46O-01 1 248637536 248637536 C A OR2T3 Nonsense_Mutation p.Y295* 0.14 TCGA-62-A46O-01 1 248790153 248790153 C A OR2T11 Missense_Mutation p.A93S 0.58 deleterious(0.04) benign(0.171) TCGA-62-A46O-01 1 248790325 248790325 G T OR2T11 Silent p.A35A 0.37 TCGA-62-A46O-01 1 27440545 27440545 C A SLC9A1 Silent p.V195V 0.37 TCGA-62-A46O-01 1 27697206 27697206 C A FCN3 Missense_Mutation p.R180L 0.46 deleterious(0.01) benign(0.016) TCGA-62-A46O-01 1 29630484 29630484 G A PTPRU Missense_Mutation p.R875H 0.32 deleterious(0.01) possibly_damaging(0.838) TCGA-62-A46O-01 1 34158616 34158616 C G CSMD2 Missense_Mutation p.Q1282H 0.27 deleterious(0) possibly_damaging(0.637) TCGA-62-A46O-01 1 35227227 35227227 G A GJB4 Silent p.R124R 0.27 TCGA-62-A46O-01 1 36824430 36824430 C A STK40 Intron 0.40 TCGA-62-A46O-01 1 39801864 39801864 C G MACF1 Intron 0.43 TCGA-62-A46O-01 1 39919517 39919517 G C MACF1 Missense_Mutation p.E4902Q 0.42 probably_damaging(1) TCGA-62-A46O-01 1 40124872 40124872 A T NT5C1A Missense_Mutation p.V343E 0.51 deleterious(0.04) possibly_damaging(0.579) TCGA-62-A46O-01 1 40703843 40703843 G C RLF Missense_Mutation p.E1157Q 0.49 deleterious(0.01) possibly_damaging(0.832) TCGA-62-A46O-01 1 41285080 41285080 A C KCNQ4 Missense_Mutation p.Y257S 0.37 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 1 45524411 45524411 C T ZSWIM5 Missense_Mutation p.M374I 0.30 deleterious(0.02) unknown(0) TCGA-62-A46O-01 1 47400767 47400767 A G CYP4A11 Missense_Mutation p.V232A 0.55 tolerated(0.21) benign(0.008) TCGA-62-A46O-01 1 48825358 48825358 G A SPATA6 Missense_Mutation p.P332S 0.63 tolerated(0.91) benign(0.002) TCGA-62-A46O-01 1 49128906 49128906 G C AGBL4 Silent p.L214L 0.37 TCGA-62-A46O-01 1 55119308 55119308 C T MROH7 Missense_Mutation p.H237Y 0.29 tolerated_low_confidence(1) benign(0.001) TCGA-62-A46O-01 1 6008259 6008259 C A NPHP4 Missense_Mutation p.R288L 0.27 tolerated(0.28) benign(0.068) TCGA-62-A46O-01 1 60456394 60456394 C G C1orf87 Missense_Mutation p.G531A 0.49 deleterious(0.02) probably_damaging(0.999) TCGA-62-A46O-01 1 6196845 6196845 G A CHD5 Silent p.I839I 0.49 TCGA-62-A46O-01 1 71546731 71546731 C G ZRANB2 5'UTR 0.28 TCGA-62-A46O-01 1 7724208 7724208 C - CAMTA1 Frame_Shift_Del p.E535Rfs*28 0.26 TCGA-62-A46O-01 1 78024306 78024306 C A AK5 Missense_Mutation p.P547Q 0.14 tolerated(0.26) benign(0.042) TCGA-62-A46O-01 1 78047685 78047685 C T ZZZ3 Missense_Mutation p.V591I 0.28 tolerated(0.12) benign(0.156) TCGA-62-A46O-01 1 79121118 79121118 G T IFI44 Silent p.G254G 0.54 TCGA-62-A46O-01 1 85331316 85331316 G T LPAR3 Missense_Mutation p.P163H 0.55 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 1 92262844 92262844 C A TGFBR3 Missense_Mutation p.E82D 0.25 deleterious(0.02) benign(0.219) TCGA-62-A46O-01 1 979782 979782 G C AGRN Missense_Mutation p.Q739H 0.46 deleterious(0.03) possibly_damaging(0.848) TCGA-62-A46O-01 20 10625014 10625014 G C JAG1 Missense_Mutation p.P788R 0.18 deleterious(0) probably_damaging(0.943) TCGA-62-A46O-01 20 20150087 20150087 C A C20orf26 Missense_Mutation p.H456Q 0.53 deleterious(0) possibly_damaging(0.89) TCGA-62-A46O-01 20 2778929 2778929 C A CPXM1 Silent p.L153L 0.17 TCGA-62-A46O-01 20 2816958 2816958 G A PCED1A Missense_Mutation p.P282S 0.37 tolerated(0.38) benign(0.028) TCGA-62-A46O-01 20 29623177 29623177 C A FRG1B 5'UTR 0.05 TCGA-62-A46O-01 20 29978350 29978350 G T DEFB119 5'Flank 0.19 TCGA-62-A46O-01 20 31023409 31023409 G C ASXL1 Missense_Mutation p.R965P 0.30 tolerated_low_confidence(0.25) benign(0.003) TCGA-62-A46O-01 20 34025155 34025155 C G GDF5 Missense_Mutation p.R185T 0.54 deleterious(0.02) probably_damaging(0.966) TCGA-62-A46O-01 20 34526625 34526625 G T PHF20 Silent p.R769R 0.21 TCGA-62-A46O-01 20 34526626 34526626 G T PHF20 Nonsense_Mutation p.E770* 0.22 TCGA-62-A46O-01 20 39793983 39793983 C G PLCG1 Silent p.L495L 0.49 TCGA-62-A46O-01 20 40709406 40709406 G T PTPRT 3'UTR 0.61 TCGA-62-A46O-01 20 40730905 40730905 G T PTPRT Silent p.P1191P 0.47 TCGA-62-A46O-01 20 42355158 42355158 A T GTSF1L Missense_Mutation p.H59Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-62-A46O-01 20 43384675 43384675 G C RIMS4 3'UTR 0.67 TCGA-62-A46O-01 20 44879737 44879737 C G CDH22 Missense_Mutation p.W66S 0.41 deleterious(0) probably_damaging(0.99) TCGA-62-A46O-01 20 4705434 4705434 G A PRND Silent p.E79E 0.39 TCGA-62-A46O-01 20 4713094 4713094 G T PRNT Missense_Mutation p.Q77K 0.36 tolerated_low_confidence(0.9) benign(0) TCGA-62-A46O-01 20 54578959 54578959 G A CBLN4 Missense_Mutation p.T90M 0.44 deleterious(0) probably_damaging(0.967) TCGA-62-A46O-01 20 57429579 57429579 C A GNAS Missense_Mutation p.P420H 0.50 deleterious_low_confidence(0) unknown(0) TCGA-62-A46O-01 20 60419726 60419726 C A CDH4 Silent p.I193I 0.38 TCGA-62-A46O-01 20 60551361 60551361 T G TAF4 Missense_Mutation p.S1041R 0.22 possibly_damaging(0.898) TCGA-62-A46O-01 20 61453160 61453160 C A COL9A3 Missense_Mutation p.P141T 0.25 tolerated(0.45) unknown(0) TCGA-62-A46O-01 20 61455825 61455825 C A COL9A3 Missense_Mutation p.P183Q 0.27 tolerated(0.17) unknown(0) TCGA-62-A46O-01 20 62122069 62122069 C A EEF1A2 Silent p.V264V 0.50 TCGA-62-A46O-01 20 62198210 62198210 G A HELZ2 Missense_Mutation p.S834F 0.47 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 20 62198671 62198671 C A HELZ2 Silent p.P680P 0.32 TCGA-62-A46O-01 20 62680582 62680582 T C SOX18 Silent p.A96A 0.42 TCGA-62-A46O-01 20 9440374 9440374 C T PLCB4 Silent p.L1043L 0.36 TCGA-62-A46O-01 21 10862824 10862824 C T IGHV1OR21-1 Silent p.S40S 0.35 TCGA-62-A46O-01 21 15858433 15858433 T A SAMSN1 Missense_Mutation p.I376F 0.23 tolerated(0.05) benign(0.188) TCGA-62-A46O-01 21 19701494 19701494 A G TMPRSS15 Missense_Mutation p.L591S 0.57 tolerated(0.08) benign(0.363) TCGA-62-A46O-01 21 30407158 30407158 G T USP16 Missense_Mutation p.G81C 0.51 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 21 31768760 31768760 C T KRTAP13-1 Missense_Mutation p.S119L 0.25 deleterious(0.02) benign(0.443) TCGA-62-A46O-01 21 31971087 31971087 G A KRTAP6-2 Missense_Mutation p.S36F 0.61 unknown(0) TCGA-62-A46O-01 21 32526683 32526683 C T TIAM1 Missense_Mutation p.S1018N 0.49 tolerated(0.43) benign(0.017) TCGA-62-A46O-01 21 32598174 32598174 C A TIAM1 Silent p.T559T 0.16 TCGA-62-A46O-01 21 32638452 32638452 C G TIAM1 Missense_Mutation p.E279D 0.57 tolerated(1) benign(0) TCGA-62-A46O-01 21 33876265 33876265 G T EVA1C Missense_Mutation p.V297F 0.45 tolerated(0.73) benign(0.002) TCGA-62-A46O-01 21 34625108 34625108 A T IFNAR2 Missense_Mutation p.T228S 0.47 deleterious(0.04) probably_damaging(0.96) TCGA-62-A46O-01 21 35166647 35166647 A T ITSN1 Missense_Mutation p.E609D 0.46 tolerated(0.26) benign(0.39) TCGA-62-A46O-01 21 41711081 41711081 C A DSCAM Missense_Mutation p.G491V 0.70 deleterious(0.02) probably_damaging(1) TCGA-62-A46O-01 21 43854980 43854980 C A UBASH3A Missense_Mutation p.L437M 0.30 deleterious(0) possibly_damaging(0.869) TCGA-62-A46O-01 21 43867404 43867404 C A UBASH3A 3'UTR 0.32 TCGA-62-A46O-01 21 44270152 44270152 G T WDR4 3'UTR 0.42 TCGA-62-A46O-01 21 45113215 45113215 C T RRP1B Missense_Mutation p.P743L 0.27 tolerated(0.92) benign(0.015) TCGA-62-A46O-01 21 46077868 46077868 C A KRTAP12-3 5'UTR 0.35 TCGA-62-A46O-01 21 47531438 47531438 G T COL6A2 Silent p.G16G 0.15 TCGA-62-A46O-01 21 47552430 47552430 C A COL6A2 Silent p.P1008P 0.33 TCGA-62-A46O-01 22 16266967 16266967 G T POTEH Missense_Mutation p.S494R 0.27 deleterious_low_confidence(0.01) benign(0.111) TCGA-62-A46O-01 22 17072522 17072522 C - CCT8L2 Frame_Shift_Del p.A307Rfs*8 0.28 TCGA-62-A46O-01 22 18656004 18656004 G - USP18 Frame_Shift_Del p.V327Wfs*42 0.25 TCGA-62-A46O-01 22 19184014 19184014 C T CLTCL1 Missense_Mutation p.V1343I 0.43 tolerated(1) benign(0.282) TCGA-62-A46O-01 22 20785037 20785037 T G SCARF2 Missense_Mutation p.H338P 0.26 deleterious(0) probably_damaging(0.963) TCGA-62-A46O-01 22 22843003 22843003 T C ZNF280B Missense_Mutation p.K241E 0.78 tolerated(0.07) benign(0.022) TCGA-62-A46O-01 22 23162141 23162141 G T IGLV3-9 Missense_Mutation p.E78D 0.80 tolerated(1) benign(0.012) TCGA-62-A46O-01 22 23243376 23243376 G A IGLC2 Silent p.L74L 0.95 TCGA-62-A46O-01 22 26707892 26707892 G A SEZ6L Missense_Mutation p.D614N 0.51 tolerated(0.31) probably_damaging(0.988) TCGA-62-A46O-01 22 28269790 28269790 T A PITPNB Missense_Mutation p.D157V 0.46 deleterious(0) benign(0.222) TCGA-62-A46O-01 22 29881748 29881748 A G NEFH Missense_Mutation p.T374A 0.45 deleterious(0.05) unknown(0) TCGA-62-A46O-01 22 30661033 30661033 C A OSM Missense_Mutation p.Q45H 0.42 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 22 32009153 32009153 G T SFI1 Missense_Mutation p.R839L 0.38 tolerated(0.07) benign(0.082) TCGA-62-A46O-01 22 36716866 36716866 G C MYH9 Missense_Mutation p.S282C 0.50 possibly_damaging(0.489) TCGA-62-A46O-01 22 37707039 37707039 G A CYTH4 Silent p.V273V 0.40 TCGA-62-A46O-01 22 37769305 37769305 G A ELFN2 Missense_Mutation p.S757F 0.28 deleterious(0) probably_damaging(0.999) TCGA-62-A46O-01 22 38273860 38273860 G T EIF3L Missense_Mutation p.K419N 0.38 deleterious(0) probably_damaging(0.994) TCGA-62-A46O-01 22 41865168 41865168 A G ACO2 Silent p.L6L 0.44 TCGA-62-A46O-01 22 41865186 41865186 G T ACO2 Missense_Mutation p.Q12H 0.42 tolerated_low_confidence(0.1) benign(0.172) TCGA-62-A46O-01 22 43435881 43435881 C T TTLL1 Silent p.G391G 0.39 TCGA-62-A46O-01 22 46725314 46725314 G T GTSE1 Missense_Mutation p.Q662H 0.26 tolerated(0.12) possibly_damaging(0.52) TCGA-62-A46O-01 22 46760129 46760129 G A CELSR1 Silent p.V2933V 0.24 TCGA-62-A46O-01 22 50727272 50727272 G A PLXNB2 Missense_Mutation p.S427L 0.51 tolerated(0.21) benign(0.011) TCGA-62-A46O-01 22 50928379 50928379 C T MIOX 3'UTR 0.37 TCGA-62-A46O-01 2 10263924 10263924 T C RRM2 Missense_Mutation p.I187T 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.881) TCGA-62-A46O-01 2 105954045 105954045 A G C2orf49 Translation_Start_Site p.M1? 0.50 tolerated(0.11) probably_damaging(0.971) TCGA-62-A46O-01 2 109382946 109382946 G T RANBP2 Missense_Mutation p.G1984V 0.32 tolerated(0.14) benign(0.168) TCGA-62-A46O-01 2 109455678 109455678 C T CCDC138 Missense_Mutation p.P415L 0.38 deleterious(0) benign(0.052) TCGA-62-A46O-01 2 113820090 113820090 C G IL36RN Missense_Mutation p.R102G 0.33 deleterious(0.02) probably_damaging(0.938) TCGA-62-A46O-01 2 114202629 114202629 C T CBWD2 Missense_Mutation p.P143S 0.06 deleterious(0.02) probably_damaging(0.956) TCGA-62-A46O-01 2 125671838 125671838 C T CNTNAP5 Silent p.S1298S 0.27 TCGA-62-A46O-01 2 130832599 130832599 G T POTEF Missense_Mutation p.R816S 0.35 deleterious_low_confidence(0) possibly_damaging(0.669) TCGA-62-A46O-01 2 131486960 131486960 G A GPR148 Missense_Mutation p.R79Q 0.39 tolerated(0.51) benign(0.019) TCGA-62-A46O-01 2 131520948 131520948 G T AMER3 Missense_Mutation p.G435C 0.32 deleterious(0) benign(0.147) TCGA-62-A46O-01 2 131840192 131840192 A G FAM168B Missense_Mutation p.S10P 0.40 tolerated_low_confidence(0.96) benign(0.354) TCGA-62-A46O-01 2 133542730 133542730 G T NCKAP5 Missense_Mutation p.P552T 0.35 tolerated(0.5) benign(0.417) TCGA-62-A46O-01 2 141202178 141202178 A T LRP1B Nonsense_Mutation p.C3376* 0.46 TCGA-62-A46O-01 2 141986918 141986918 G T LRP1B Missense_Mutation p.S228R 0.60 benign(0.006) TCGA-62-A46O-01 2 144710380 144710380 T A GTDC1 Silent p.P387P 0.26 TCGA-62-A46O-01 2 1459889 1459889 G T TPO Missense_Mutation p.E218D 0.42 tolerated(0.07) probably_damaging(0.945) TCGA-62-A46O-01 2 149864513 149864513 G T KIF5C Missense_Mutation p.A828S 0.41 tolerated(0.79) benign(0.004) TCGA-62-A46O-01 2 152423892 152423892 C T NEB Silent p.Q5982Q 0.33 TCGA-62-A46O-01 2 152432764 152432764 G C NEB Missense_Mutation p.D5603E 0.54 benign(0.296) TCGA-62-A46O-01 2 152521350 152521350 C A NEB Missense_Mutation p.D1756Y 0.45 possibly_damaging(0.455) TCGA-62-A46O-01 2 155099300 155099300 C A GALNT13 Missense_Mutation p.R190S 0.29 deleterious(0) probably_damaging(0.96) TCGA-62-A46O-01 2 155099351 155099351 C G GALNT13 Missense_Mutation p.L207V 0.54 deleterious(0) probably_damaging(0.993) TCGA-62-A46O-01 2 16082270 16082270 C T MYCN Silent p.F28F 0.48 TCGA-62-A46O-01 2 162735675 162735675 G T SLC4A10 Missense_Mutation p.G328V 0.53 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 2 163374645 163374645 G A KCNH7 Missense_Mutation p.P163S 0.26 deleterious(0.03) benign(0.059) TCGA-62-A46O-01 2 168103465 168103465 A C XIRP2 Missense_Mutation p.K1855Q 0.44 benign(0.152) TCGA-62-A46O-01 2 169780262 169780262 G A ABCB11 Missense_Mutation p.T1279I 0.26 deleterious(0) probably_damaging(0.999) TCGA-62-A46O-01 2 170150674 170150674 A G LRP2 Silent p.S212S 0.36 TCGA-62-A46O-01 2 175346303 175346303 C G GPR155 Missense_Mutation p.D128H 0.29 tolerated(0.05) possibly_damaging(0.853) TCGA-62-A46O-01 2 178378634 178378634 C T AGPS Silent p.C565C 0.28 TCGA-62-A46O-01 2 186697907 186697907 C A FSIP2 Missense_Mutation p.T6982N 0.41 benign(0) TCGA-62-A46O-01 2 18736576 18736576 C T RDH14 Missense_Mutation p.V298M 0.40 deleterious(0.01) probably_damaging(0.976) TCGA-62-A46O-01 2 189906373 189906373 C A COL5A2 Missense_Mutation p.G1191V 0.39 unknown(0) TCGA-62-A46O-01 2 191231510 191231510 G A INPP1 Missense_Mutation p.E119K 0.33 tolerated(0.38) benign(0.032) TCGA-62-A46O-01 2 191235767 191235767 G T INPP1 Missense_Mutation p.C280F 0.31 deleterious(0) probably_damaging(0.999) TCGA-62-A46O-01 2 191301723 191301723 G T MFSD6 Missense_Mutation p.R323L 0.50 deleterious(0.05) benign(0.271) TCGA-62-A46O-01 2 191302181 191302181 A G MFSD6 Missense_Mutation p.N476D 0.37 tolerated(0.23) benign(0.345) TCGA-62-A46O-01 2 191792096 191792096 G T GLS Missense_Mutation p.G438V 0.31 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 2 196636407 196636407 C A DNAH7 Missense_Mutation p.V3804L 0.30 tolerated(0.18) benign(0.09) TCGA-62-A46O-01 2 198274703 198274703 C T SF3B1 Nonsense_Mutation p.W232* 0.28 TCGA-62-A46O-01 2 198498471 198498471 G T RFTN2 Missense_Mutation p.P230H 0.23 deleterious(0) probably_damaging(0.952) TCGA-62-A46O-01 2 202211265 202211265 C A ALS2CR12 Missense_Mutation p.R123M 0.30 deleterious(0) probably_damaging(0.999) TCGA-62-A46O-01 2 204304470 204304470 A T RAPH1 Missense_Mutation p.V1148E 0.38 unknown(0) TCGA-62-A46O-01 2 207824396 207824396 C G CPO Silent p.L138L 0.55 TCGA-62-A46O-01 2 209358000 209358000 G T PTH2R Missense_Mutation p.E423D 0.40 deleterious(0) probably_damaging(0.998) TCGA-62-A46O-01 2 210557884 210557884 G T MAP2 Missense_Mutation p.K330N 0.33 deleterious_low_confidence(0) possibly_damaging(0.834) TCGA-62-A46O-01 2 21226197 21226197 C A APOB Missense_Mutation p.D4033Y 0.40 possibly_damaging(0.781) TCGA-62-A46O-01 2 219339353 219339353 C A USP37 Missense_Mutation p.D767Y 0.21 deleterious(0.01) possibly_damaging(0.724) TCGA-62-A46O-01 2 219418392 219418392 C G USP37 Missense_Mutation p.R71P 0.30 tolerated(0.08) possibly_damaging(0.885) TCGA-62-A46O-01 2 220147942 220147942 G C DNAJB2 Missense_Mutation p.R178P 0.29 deleterious(0) benign(0.356) TCGA-62-A46O-01 2 220252534 220252556 CCCGCCCCCACCGCGCCGCCTGC - DNPEP 5'UTR 0.41 TCGA-62-A46O-01 2 220344771 220344771 G T SPEG Nonsense_Mutation p.G1751* 0.25 TCGA-62-A46O-01 2 220349275 220349275 C G SPEG Missense_Mutation p.R2364G 0.59 benign(0.131) TCGA-62-A46O-01 2 220349276 220349276 G A SPEG Missense_Mutation p.R2364H 0.59 possibly_damaging(0.708) TCGA-62-A46O-01 2 220379609 220379609 G C ASIC4 Missense_Mutation p.G182R 0.25 tolerated(0.24) benign(0.134) TCGA-62-A46O-01 2 220476337 220476337 G T STK11IP Missense_Mutation p.V717L 0.53 tolerated(0.15) probably_damaging(0.98) TCGA-62-A46O-01 2 232209773 232209773 C T ARMC9 Silent p.T655T 0.31 TCGA-62-A46O-01 2 233898955 233898955 G T NEU2 Nonsense_Mutation p.E111* 0.54 TCGA-62-A46O-01 2 234106956 234106956 T A INPP5D Missense_Mutation p.I958K 0.31 tolerated(0.2) benign(0.239) TCGA-62-A46O-01 2 234181620 234181620 A T ATG16L1 Missense_Mutation p.D239V 0.56 deleterious(0) probably_damaging(0.998) TCGA-62-A46O-01 2 234652547 234652547 C G UGT1A10 Intron 0.28 TCGA-62-A46O-01 2 238275574 238275574 T A COL6A3 Silent p.G1752G 0.62 TCGA-62-A46O-01 2 240985219 240985219 G A OR6B3 Missense_Mutation p.R91C 0.31 tolerated(0.21) benign(0.002) TCGA-62-A46O-01 2 241070447 241070447 C T MYEOV2 Intron 0.27 TCGA-62-A46O-01 2 27458235 27458235 G A CAD Missense_Mutation p.M1303I 0.40 deleterious(0.04) benign(0.056) TCGA-62-A46O-01 2 27700980 27700980 T A IFT172 Missense_Mutation p.K350M 0.45 deleterious(0) possibly_damaging(0.794) TCGA-62-A46O-01 2 32117063 32117063 C G MEMO1 Missense_Mutation p.W193S 0.41 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 2 32445404 32445404 G C SLC30A6 Missense_Mutation p.W376C 0.35 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 2 37255973 37255973 C A HEATR5B Missense_Mutation p.G1151V 0.33 deleterious(0) probably_damaging(0.994) TCGA-62-A46O-01 2 37455421 37455421 C T CEBPZ Silent p.R305R 0.40 TCGA-62-A46O-01 2 43919661 43919661 T A PLEKHH2 Silent p.V65V 0.19 TCGA-62-A46O-01 2 48874181 48874181 G T STON1-GTF2A1L Missense_Mutation p.K1030N 0.31 tolerated(0.18) possibly_damaging(0.511) TCGA-62-A46O-01 2 48874182 48874182 G T STON1-GTF2A1L Splice_Site p.X1030_splice 0.31 TCGA-62-A46O-01 2 50724535 50724535 C A NRXN1 Missense_Mutation p.D979Y 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-62-A46O-01 2 54872492 54872492 A T SPTBN1 Nonsense_Mutation p.K1466* 0.38 TCGA-62-A46O-01 2 55921008 55921008 G T PNPT1 5'UTR 0.23 TCGA-62-A46O-01 2 64863695 64863695 G - SERTAD2 Frame_Shift_Del p.P104Rfs*93 0.32 TCGA-62-A46O-01 2 70165369 70165369 A G MXD1 Missense_Mutation p.K207E 0.41 deleterious(0) benign(0.04) TCGA-62-A46O-01 2 70504289 70504289 C G PCYOX1 Missense_Mutation p.A428G 0.43 deleterious(0) possibly_damaging(0.601) TCGA-62-A46O-01 2 70933550 70933550 G T ADD2 5'UTR 0.41 TCGA-62-A46O-01 2 74184313 74184313 A G DGUOK Missense_Mutation p.Y218C 0.56 deleterious(0) probably_damaging(0.999) TCGA-62-A46O-01 2 74691631 74691631 C G MOGS Missense_Mutation p.E191Q 0.42 tolerated(0.44) benign(0.035) TCGA-62-A46O-01 2 74789528 74789528 G T M1AP Missense_Mutation p.A366D 0.41 deleterious(0) probably_damaging(0.988) TCGA-62-A46O-01 2 79363199 79363199 A C REG1P RNA 0.27 TCGA-62-A46O-01 2 79971613 79971613 C T CTNNA2 Missense_Mutation p.T68I 0.35 tolerated(0.42) possibly_damaging(0.515) TCGA-62-A46O-01 2 85785588 85785588 T G GGCX Missense_Mutation p.T172P 0.19 tolerated(0.25) possibly_damaging(0.555) TCGA-62-A46O-01 2 85808749 85808749 G A VAMP8 Nonsense_Mutation p.W71* 0.42 TCGA-62-A46O-01 2 86350836 86350836 G A PTCD3 Missense_Mutation p.D223N 0.36 tolerated(0.59) benign(0) TCGA-62-A46O-01 2 86831549 86831549 C T RNF103 Missense_Mutation p.R492H 0.09 tolerated(0.1) benign(0.221) TCGA-62-A46O-01 2 88484868 88484868 G T THNSL2 Missense_Mutation p.V367L 0.32 tolerated(0.68) benign(0.006) TCGA-62-A46O-01 2 89247025 89247025 G T IGKV1-5 Missense_Mutation p.Q49K 0.43 deleterious(0.02) benign(0.19) TCGA-62-A46O-01 2 89953113 89953113 G T IGKV1D-33 Missense_Mutation p.V37L 0.17 tolerated(0.64) benign(0.012) TCGA-62-A46O-01 2 96781255 96781255 C A ADRA2B Missense_Mutation p.G212W 0.42 deleterious(0.01) possibly_damaging(0.749) TCGA-62-A46O-01 2 96795700 96795700 C A ASTL Missense_Mutation p.R246L 0.49 tolerated(0.09) probably_damaging(0.944) TCGA-62-A46O-01 2 96991515 96991515 A T ITPRIPL1 5'Flank 0.47 TCGA-62-A46O-01 2 97911354 97911354 C G ANKRD36 Missense_Mutation p.S1677C 0.20 deleterious(0.01) probably_damaging(0.923) TCGA-62-A46O-01 2 98375500 98375500 G A TMEM131 Silent p.L1741L 0.30 TCGA-62-A46O-01 3 100378642 100378642 C T GPR128 Missense_Mutation p.T645I 0.08 tolerated(1) benign(0.001) TCGA-62-A46O-01 3 101540689 101540689 G T NXPE3 Missense_Mutation p.W524L 0.42 deleterious(0) probably_damaging(0.998) TCGA-62-A46O-01 3 102171840 102171840 G A ZPLD1 Missense_Mutation p.G78S 0.34 deleterious(0.02) probably_damaging(0.949) TCGA-62-A46O-01 3 108270064 108270064 T G KIAA1524 Missense_Mutation p.M884L 0.45 tolerated(0.21) benign(0.053) TCGA-62-A46O-01 3 108405387 108405387 G T DZIP3 Missense_Mutation p.E1035D 0.40 tolerated(0.08) benign(0.016) TCGA-62-A46O-01 3 109049293 109049293 C T DPPA4 Intron 0.69 TCGA-62-A46O-01 3 111356108 111356108 G T CD96 Missense_Mutation p.D479Y 0.38 tolerated(0.15) possibly_damaging(0.556) TCGA-62-A46O-01 3 112998818 112998818 C A BOC Missense_Mutation p.A723E 0.27 deleterious(0) probably_damaging(0.999) TCGA-62-A46O-01 3 114018492 114018492 C G TIGIT Missense_Mutation p.A147G 0.30 tolerated(0.12) benign(0.062) TCGA-62-A46O-01 3 114057716 114057716 G C ZBTB20 3'UTR 0.67 TCGA-62-A46O-01 3 120499907 120499907 G C GTF2E1 Missense_Mutation p.A304P 0.43 tolerated(0.22) benign(0.002) TCGA-62-A46O-01 3 120628540 120628540 C A STXBP5L Missense_Mutation p.P39T 0.36 deleterious(0.03) benign(0.097) TCGA-62-A46O-01 3 121151853 121151853 C A POLQ Missense_Mutation p.G2524V 0.24 deleterious(0.01) probably_damaging(0.982) TCGA-62-A46O-01 3 121206886 121206886 C A POLQ Missense_Mutation p.W1631L 0.39 deleterious(0.05) probably_damaging(0.948) TCGA-62-A46O-01 3 121206888 121206888 T A POLQ Silent p.I1630I 0.38 TCGA-62-A46O-01 3 121417266 121417266 C A GOLGB1 Nonsense_Mutation p.E702* 0.39 TCGA-62-A46O-01 3 121980794 121980794 G C CASR Silent p.L304L 0.52 TCGA-62-A46O-01 3 122414429 122414429 A G PARP14 Missense_Mutation p.Y252C 0.38 tolerated(0.16) benign(0.001) TCGA-62-A46O-01 3 125172777 125172777 T A SNX4 Missense_Mutation p.K356M 0.47 deleterious(0.01) probably_damaging(0.979) TCGA-62-A46O-01 3 125727577 125727577 G T SLC41A3 Missense_Mutation p.Q418K 0.49 deleterious(0) possibly_damaging(0.759) TCGA-62-A46O-01 3 129247649 129247649 G C RHO Missense_Mutation p.E25Q 0.51 deleterious(0.05) possibly_damaging(0.77) TCGA-62-A46O-01 3 129251438 129251438 G T RHO Missense_Mutation p.M253I 0.54 deleterious(0) probably_damaging(0.986) TCGA-62-A46O-01 3 12977840 12977840 C A IQSEC1 Nonsense_Mutation p.E240* 0.72 TCGA-62-A46O-01 3 130282481 130282481 G T COL6A6 Nonsense_Mutation p.G212* 0.43 TCGA-62-A46O-01 3 132036247 132036247 T C ACPP 5'Flank 0.49 TCGA-62-A46O-01 3 132347227 132347227 T C ACAD11 Missense_Mutation p.I343V 0.48 tolerated(0.72) benign(0.001) TCGA-62-A46O-01 3 134322915 134322915 C T KY Missense_Mutation p.G498R 0.58 deleterious(0.04) possibly_damaging(0.832) TCGA-62-A46O-01 3 138739018 138739018 C A PRR23B Missense_Mutation p.E162D 0.16 tolerated(0.4) possibly_damaging(0.908) TCGA-62-A46O-01 3 140689815 140689815 T A SLC25A36 Silent p.T144T 0.41 TCGA-62-A46O-01 3 140689816 140689816 C G SLC25A36 Missense_Mutation p.R145G 0.40 deleterious(0) probably_damaging(0.979) TCGA-62-A46O-01 3 142511803 142511803 A G TRPC1 Silent p.P525P 0.56 TCGA-62-A46O-01 3 143691784 143691784 C T C3orf58 Nonsense_Mutation p.Q204* 0.19 TCGA-62-A46O-01 3 154147301 154147301 T G GPR149 Missense_Mutation p.Y35S 0.38 tolerated(0.12) benign(0.003) TCGA-62-A46O-01 3 164735586 164735586 C A SI Missense_Mutation p.G1199V 0.38 deleterious(0) probably_damaging(0.932) TCGA-62-A46O-01 3 164750395 164750395 G T SI Missense_Mutation p.T884K 0.31 tolerated(0.78) benign(0.006) TCGA-62-A46O-01 3 167016242 167016242 A T ZBBX Nonsense_Mutation p.L577* 0.38 TCGA-62-A46O-01 3 167033537 167033537 C A ZBBX Splice_Site p.X425_splice 0.30 TCGA-62-A46O-01 3 184062428 184062428 G T FAM131A Silent p.L257L 0.58 TCGA-62-A46O-01 3 186460053 186460053 G C KNG1 Missense_Mutation p.S623T 0.31 tolerated(0.51) benign(0.004) TCGA-62-A46O-01 3 190362170 190362170 A T IL1RAP Silent p.T395T 0.34 TCGA-62-A46O-01 3 194061746 194061746 T A CPN2 3'UTR 0.53 TCGA-62-A46O-01 3 195594534 195594534 C A TNK2 Nonsense_Mutation p.E942* 0.41 TCGA-62-A46O-01 3 196509691 196509691 A T PAK2 Silent p.S58S 0.34 TCGA-62-A46O-01 3 38805007 38805007 G A SCN10A Missense_Mutation p.S227F 0.81 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 3 39431919 39431919 G T SLC25A38 Missense_Mutation p.R66I 0.89 tolerated(0.19) benign(0.315) TCGA-62-A46O-01 3 46712522 46712522 C G ALS2CL Missense_Mutation p.M938I 0.75 tolerated(0.66) benign(0.091) TCGA-62-A46O-01 3 49049964 49049964 C T WDR6 Missense_Mutation p.R363W 0.70 deleterious(0.02) possibly_damaging(0.599) TCGA-62-A46O-01 3 49699715 49699715 G - BSN Frame_Shift_Del p.G3480Afs*7 0.65 TCGA-62-A46O-01 3 51864790 51864790 G A IQCF3 Silent p.E146E 0.88 TCGA-62-A46O-01 3 53275235 53275235 C T TKT Silent p.A84A 0.31 TCGA-62-A46O-01 3 56605328 56605328 A T CCDC66 Missense_Mutation p.R312W 0.74 deleterious(0.02) possibly_damaging(0.849) TCGA-62-A46O-01 3 57130333 57130333 C A IL17RD 3'UTR 0.75 TCGA-62-A46O-01 3 77595509 77595509 C T ROBO2 Missense_Mutation p.R335W 0.75 deleterious(0.01) possibly_damaging(0.898) TCGA-62-A46O-01 3 87017812 87017812 A T VGLL3 Missense_Mutation p.S289T 0.32 tolerated(1) benign(0) TCGA-62-A46O-01 3 89259557 89259557 C G EPHA3 Missense_Mutation p.S234C 0.13 deleterious(0) probably_damaging(0.991) TCGA-62-A46O-01 3 99897182 99897182 G T CMSS1 Nonsense_Mutation p.G264* 0.26 TCGA-62-A46O-01 4 100239261 100239261 G T ADH1B Silent p.G67G 0.31 TCGA-62-A46O-01 4 103534719 103534719 C T NFKB1 Silent p.A910A 0.14 TCGA-62-A46O-01 4 103579013 103579013 C A MANBA Silent p.G510G 0.37 TCGA-62-A46O-01 4 10542196 10542196 G T CLNK Missense_Mutation p.P175H 0.19 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 4 115748954 115748954 T A NDST4 3'UTR 0.50 TCGA-62-A46O-01 4 122853973 122853973 C A TRPC3 Missense_Mutation p.G147V 0.31 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 4 123317442 123317442 A T ADAD1 Missense_Mutation p.I212F 0.67 tolerated(0.09) benign(0.002) TCGA-62-A46O-01 4 126373554 126373554 G A FAT4 Missense_Mutation p.G3795R 0.38 probably_damaging(0.994) TCGA-62-A46O-01 4 128688334 128688334 G T SLC25A31 Missense_Mutation p.V198L 0.57 tolerated(0.09) probably_damaging(0.994) TCGA-62-A46O-01 4 128688336 128688336 G T SLC25A31 Silent p.V198V 0.55 TCGA-62-A46O-01 4 13339891 13339891 T A HSP90AB2P RNA 0.38 TCGA-62-A46O-01 4 138442738 138442738 C A PCDH18 Silent p.G951G 0.45 TCGA-62-A46O-01 4 138449791 138449791 C A PCDH18 Missense_Mutation p.A861S 0.30 tolerated(0.08) benign(0.408) TCGA-62-A46O-01 4 140599756 140599756 G A MGST2 Missense_Mutation p.V40I 0.26 tolerated(0.14) benign(0.39) TCGA-62-A46O-01 4 146770558 146770558 C A ZNF827 Nonsense_Mutation p.E713* 0.31 TCGA-62-A46O-01 4 148579000 148579000 T G PRMT10 Missense_Mutation p.S425R 0.58 tolerated(0.27) possibly_damaging(0.756) TCGA-62-A46O-01 4 156634672 156634674 CAC - GUCY1A3 In_Frame_Del p.T504del 0.63 TCGA-62-A46O-01 4 15839729 15839729 C A CD38 Silent p.A200A 0.48 TCGA-62-A46O-01 4 15938236 15938236 G T FGFBP1 Missense_Mutation p.T7N 0.46 tolerated(0.06) possibly_damaging(0.728) TCGA-62-A46O-01 4 159593587 159593587 G C ETFDH 5'UTR 0.23 TCGA-62-A46O-01 4 166960577 166960577 A G TLL1 Silent p.R415R 0.36 TCGA-62-A46O-01 4 166999059 166999059 G A TLL1 Silent p.E773E 0.64 TCGA-62-A46O-01 4 171010794 171010794 A C AADAT Silent p.P16P 0.41 TCGA-62-A46O-01 4 177070978 177070978 C A WDR17 Missense_Mutation p.R664S 0.51 deleterious(0.01) possibly_damaging(0.624) TCGA-62-A46O-01 4 187554941 187554941 C A FAT1 Missense_Mutation p.G1407V 0.55 possibly_damaging(0.673) TCGA-62-A46O-01 4 189064845 189064845 G T TRIML1 Intron 0.69 TCGA-62-A46O-01 4 20611679 20611679 C G SLIT2 Missense_Mutation p.L1246V 0.40 tolerated(1) benign(0.006) TCGA-62-A46O-01 4 22389997 22389997 T A GPR125 Silent p.T1099T 0.35 TCGA-62-A46O-01 4 25678020 25678020 C G SLC34A2 Silent p.L574L 0.39 TCGA-62-A46O-01 4 39482763 39482763 G C LIAS 3'Flank 0.38 TCGA-62-A46O-01 4 40752995 40752995 C T NSUN7 Silent p.F95F 0.52 TCGA-62-A46O-01 4 437352 437352 C T ZNF721 Missense_Mutation p.E302K 0.41 tolerated(0.07) probably_damaging(0.971) TCGA-62-A46O-01 4 53248 53248 G C ZNF595 5'UTR 0.13 TCGA-62-A46O-01 4 5570314 5570314 C A EVC2 Silent p.T1138T 0.26 TCGA-62-A46O-01 4 55964390 55964390 G T KDR Missense_Mutation p.P808Q 0.50 deleterious(0) possibly_damaging(0.739) TCGA-62-A46O-01 4 68708299 68708299 G T TMPRSS11D Silent p.I98I 0.44 TCGA-62-A46O-01 4 70355182 70355182 G A UGT2B4 Missense_Mutation p.S326L 0.29 tolerated(0.07) probably_damaging(0.942) TCGA-62-A46O-01 4 70361050 70361050 C T UGT2B4 Missense_Mutation p.G177D 0.50 deleterious(0.01) probably_damaging(0.982) TCGA-62-A46O-01 4 74349987 74349987 A G AFM Silent p.A50A 0.27 TCGA-62-A46O-01 4 76417106 76417106 C A RCHY1 Missense_Mutation p.C148F 0.29 deleterious(0) probably_damaging(0.992) TCGA-62-A46O-01 4 76808016 76808016 T C PPEF2 Missense_Mutation p.I190V 0.48 tolerated(0.07) possibly_damaging(0.572) TCGA-62-A46O-01 4 81188165 81188165 C G FGF5 Missense_Mutation p.P63A 0.39 tolerated(0.58) benign(0.002) TCGA-62-A46O-01 4 8224571 8224571 G T SH3TC1 Nonsense_Mutation p.E373* 0.37 TCGA-62-A46O-01 4 83602009 83602009 C T SCD5 Silent p.T140T 0.22 TCGA-62-A46O-01 4 84406269 84406269 C A FAM175A 5'UTR 0.50 TCGA-62-A46O-01 4 8609052 8609052 C T CPZ Missense_Mutation p.S376L 0.39 deleterious(0) probably_damaging(0.999) TCGA-62-A46O-01 4 86179 86179 G T Z95704.2 RNA 0.39 TCGA-62-A46O-01 4 86491827 86491827 G T ARHGAP24 Missense_Mutation p.G45W 0.35 deleterious(0) probably_damaging(0.928) TCGA-62-A46O-01 4 89060976 89060976 G C ABCG2 Missense_Mutation p.P58A 0.46 tolerated(0.16) benign(0) TCGA-62-A46O-01 4 9784742 9784742 C T DRD5 Silent p.A363A 0.08 TCGA-62-A46O-01 5 10992687 10992687 G A CTNND2 Missense_Mutation p.R1063C 0.35 deleterious(0) probably_damaging(0.99) TCGA-62-A46O-01 5 114472804 114472804 T C TRIM36 Missense_Mutation p.E380G 0.36 deleterious(0.01) possibly_damaging(0.804) TCGA-62-A46O-01 5 121406285 121406285 C G LOX Splice_Site p.X346_splice 0.53 TCGA-62-A46O-01 5 121759191 121759191 C G SNCAIP Missense_Mutation p.N253K 0.18 tolerated(0.34) benign(0.14) TCGA-62-A46O-01 5 128440754 128440754 G T ISOC1 Missense_Mutation p.V139L 0.18 deleterious(0.02) probably_damaging(0.93) TCGA-62-A46O-01 5 1323949 1323949 G C CLPTM1L Silent p.L411L 0.28 TCGA-62-A46O-01 5 132652222 132652222 G A FSTL4 Silent p.L178L 0.24 TCGA-62-A46O-01 5 132652223 132652223 G A FSTL4 Silent p.L177L 0.25 TCGA-62-A46O-01 5 139231208 139231208 C A NRG2 Missense_Mutation p.D585Y 0.35 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 5 139819840 139819840 G A ANKHD1 Missense_Mutation p.E252K 0.38 unknown(0) TCGA-62-A46O-01 5 140215443 140215443 A T PCDHA7 Missense_Mutation p.Y492F 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.85) TCGA-62-A46O-01 5 140503075 140503075 C A PCDHB4 Missense_Mutation p.L499I 0.44 deleterious_low_confidence(0.03) possibly_damaging(0.808) TCGA-62-A46O-01 5 140516074 140516074 G A PCDHB5 Missense_Mutation p.S353N 0.46 tolerated_low_confidence(0.29) benign(0.012) TCGA-62-A46O-01 5 140573353 140573353 G T PCDHB10 Missense_Mutation p.D410Y 0.30 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-62-A46O-01 5 140579439 140579439 G T PCDHB11 Missense_Mutation p.W31L 0.37 tolerated_low_confidence(0.65) benign(0.001) TCGA-62-A46O-01 5 140581526 140581526 G T PCDHB11 Missense_Mutation p.V727L 0.31 tolerated_low_confidence(0.05) benign(0.026) TCGA-62-A46O-01 5 140589914 140589914 G T PCDHB12 Missense_Mutation p.D479Y 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-62-A46O-01 5 140605134 140605134 T A PCDHB14 Missense_Mutation p.L686H 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-62-A46O-01 5 140625940 140625940 C A PCDHB15 Missense_Mutation p.S265Y 0.37 deleterious_low_confidence(0) possibly_damaging(0.654) TCGA-62-A46O-01 5 140724046 140724046 G C PCDHGA3 Missense_Mutation p.G149A 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.625) TCGA-62-A46O-01 5 140730252 140730252 C T PCDHGB1 Missense_Mutation p.S142L 0.43 tolerated(0.64) benign(0.246) TCGA-62-A46O-01 5 140784470 140784470 C T PCDHGA9 Nonsense_Mutation p.Q651* 0.46 TCGA-62-A46O-01 5 141035435 141035435 C T ARAP3 Splice_Site p.X1324_splice 0.35 TCGA-62-A46O-01 5 141336368 141336368 G T PCDH12 Missense_Mutation p.P350Q 0.36 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 5 14508353 14508353 C T TRIO Missense_Mutation p.P3039L 0.31 unknown(0) TCGA-62-A46O-01 5 149274854 149274854 C A PDE6A Splice_Site p.X541_splice 0.35 TCGA-62-A46O-01 5 151231155 151231155 G C GLRA1 Silent p.T236T 0.39 TCGA-62-A46O-01 5 153433099 153433099 G T MFAP3 Silent p.L305L 0.54 TCGA-62-A46O-01 5 154278851 154278851 T A GEMIN5 Nonsense_Mutation p.K1012* 0.34 TCGA-62-A46O-01 5 156346537 156346537 T A TIMD4 Silent p.G356G 0.43 TCGA-62-A46O-01 5 156589981 156589981 C A FAM71B Missense_Mutation p.R432I 0.56 deleterious(0) possibly_damaging(0.862) TCGA-62-A46O-01 5 159680412 159680412 C A CCNJL Missense_Mutation p.M427I 0.42 tolerated(0.21) benign(0.001) TCGA-62-A46O-01 5 159822492 159822492 C T C5orf54 Silent p.S2S 0.32 TCGA-62-A46O-01 5 159992723 159992723 G A ATP10B Nonsense_Mutation p.Q1375* 0.28 TCGA-62-A46O-01 5 16091111 16091111 C A MARCH11 Missense_Mutation p.S258I 0.33 deleterious(0) probably_damaging(0.991) TCGA-62-A46O-01 5 161128585 161128585 G T GABRA6 Missense_Mutation p.V390L 0.33 tolerated(0.78) benign(0.001) TCGA-62-A46O-01 5 161324408 161324408 G T GABRA1 Missense_Mutation p.A451S 0.24 deleterious_low_confidence(0.02) benign(0.007) TCGA-62-A46O-01 5 161569247 161569249 TGC CCA GABRG2 Missense_Mutation p.C323P 0.09 TCGA-62-A46O-01 5 167420050 167420050 G T TENM2 Missense_Mutation p.R350L 0.32 deleterious(0) probably_damaging(0.969) TCGA-62-A46O-01 5 170883633 170883633 T C FGF18 Missense_Mutation p.Y150H 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-62-A46O-01 5 177633748 177633748 G A HNRNPAB Missense_Mutation p.E132K 0.32 deleterious(0.01) possibly_damaging(0.833) TCGA-62-A46O-01 5 178030861 178030861 C A CLK4 Missense_Mutation p.R430L 0.28 tolerated(0.08) benign(0.348) TCGA-62-A46O-01 5 23510028 23510028 G T PRDM9 Splice_Site p.X65_splice 0.36 TCGA-62-A46O-01 5 2755229 2755229 C - C5orf38 3'UTR 0.31 TCGA-62-A46O-01 5 33881301 33881301 G - ADAMTS12 Frame_Shift_Del p.L138Sfs*26 0.35 TCGA-62-A46O-01 5 35793303 35793303 G T SPEF2 Missense_Mutation p.V1533L 0.50 tolerated(0.09) probably_damaging(0.988) TCGA-62-A46O-01 5 39331858 39331858 C T C9 Missense_Mutation p.G179R 0.23 deleterious(0) probably_damaging(0.999) TCGA-62-A46O-01 5 43161541 43161541 G C ZNF131 Missense_Mutation p.E188Q 0.36 tolerated(0.19) probably_damaging(0.997) TCGA-62-A46O-01 5 43645476 43645476 C T NNT Silent p.F436F 0.56 TCGA-62-A46O-01 5 45262532 45262532 G T HCN1 Missense_Mutation p.P722T 0.20 deleterious_low_confidence(0) benign(0.108) TCGA-62-A46O-01 5 53751512 53751512 G T HSPB3 5'UTR 0.23 TCGA-62-A46O-01 5 57913567 57913567 T A RAB3C Missense_Mutation p.V41E 0.50 deleterious(0) probably_damaging(0.983) TCGA-62-A46O-01 5 58147019 58147019 G A RAB3C Silent p.K175K 0.15 TCGA-62-A46O-01 5 66479055 66479055 G C CD180 Missense_Mutation p.S539C 0.19 deleterious(0) possibly_damaging(0.509) TCGA-62-A46O-01 5 6753097 6753097 G C PAPD7 Missense_Mutation p.A461P 0.46 deleterious_low_confidence(0.05) possibly_damaging(0.828) TCGA-62-A46O-01 5 76129204 76129204 A G F2RL1 Missense_Mutation p.T258A 0.49 tolerated(0.09) benign(0.281) TCGA-62-A46O-01 5 79027122 79027122 C T CMYA5 Missense_Mutation p.S845F 0.30 probably_damaging(0.979) TCGA-62-A46O-01 5 79029781 79029781 T C CMYA5 Silent p.S1731S 0.35 TCGA-62-A46O-01 5 79031291 79031291 G A CMYA5 Missense_Mutation p.D2235N 0.21 benign(0.305) TCGA-62-A46O-01 5 80409606 80409606 A G RASGRF2 Silent p.P779P 0.37 TCGA-62-A46O-01 5 82817918 82817918 G T VCAN Missense_Mutation p.D1265Y 0.49 deleterious(0) probably_damaging(0.959) TCGA-62-A46O-01 5 95730645 95730645 G C PCSK1 Missense_Mutation p.Q603E 0.37 tolerated(0.33) benign(0) TCGA-62-A46O-01 5 96071927 96071927 G T CAST Missense_Mutation p.D187Y 0.54 deleterious(0.01) possibly_damaging(0.847) TCGA-62-A46O-01 6 105725982 105725983 - A PREP 3'UTR 0.24 TCGA-62-A46O-01 6 10707698 10707698 C G PAK1IP1 Nonsense_Mutation p.S264* 0.55 TCGA-62-A46O-01 6 10755445 10755445 A G TMEM14B Silent p.V91V 0.44 TCGA-62-A46O-01 6 112450136 112450136 A T LAMA4 Missense_Mutation p.S1425R 0.23 tolerated(0.27) benign(0.003) TCGA-62-A46O-01 6 112455721 112455721 G A LAMA4 Missense_Mutation p.P1169S 0.52 deleterious(0.01) probably_damaging(1) TCGA-62-A46O-01 6 117237389 117237389 G - RFX6 Frame_Shift_Del p.W295Cfs*49 0.21 TCGA-62-A46O-01 6 117248197 117248197 G - RFX6 Frame_Shift_Del p.E632Sfs*9 0.19 TCGA-62-A46O-01 6 117710577 117710577 C A ROS1 Silent p.S565S 0.55 TCGA-62-A46O-01 6 131917232 131917232 G C MED23 Silent p.P950P 0.21 TCGA-62-A46O-01 6 133070911 133070911 T A VNN2 Missense_Mutation p.S432C 0.28 deleterious(0.04) probably_damaging(0.999) TCGA-62-A46O-01 6 134496020 134496020 C A SGK1 Intron 0.20 TCGA-62-A46O-01 6 136562750 136562750 C A MTFR2 Missense_Mutation p.D116Y 0.48 tolerated(0.07) possibly_damaging(0.863) TCGA-62-A46O-01 6 136562751 136562751 C A MTFR2 Silent p.R115R 0.46 TCGA-62-A46O-01 6 136686924 136686924 C G MAP7 Missense_Mutation p.E430Q 0.25 tolerated(0.22) probably_damaging(0.917) TCGA-62-A46O-01 6 154412360 154412360 C G OPRM1 Missense_Mutation p.A399G 0.82 tolerated(0.23) probably_damaging(0.954) TCGA-62-A46O-01 6 157454264 157454264 A T ARID1B Missense_Mutation p.H825L 0.83 possibly_damaging(0.772) TCGA-62-A46O-01 6 157495203 157495203 A T ARID1B Missense_Mutation p.K1029N 0.73 probably_damaging(0.999) TCGA-62-A46O-01 6 160106029 160106029 G A SOD2 Missense_Mutation p.S127F 0.82 deleterious(0) probably_damaging(0.968) TCGA-62-A46O-01 6 16328532 16328532 T A ATXN1 Missense_Mutation p.N4Y 0.54 deleterious(0) possibly_damaging(0.613) TCGA-62-A46O-01 6 163735955 163735955 G T PACRG Missense_Mutation p.G276V 0.84 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 6 169648925 169648925 C T THBS2 Missense_Mutation p.V66M 0.73 deleterious(0) possibly_damaging(0.563) TCGA-62-A46O-01 6 25773877 25773877 C T SLC17A4 Missense_Mutation p.S321L 0.18 deleterious(0.01) possibly_damaging(0.463) TCGA-62-A46O-01 6 25850766 25850766 C T SLC17A3 Missense_Mutation p.S305N 0.51 deleterious(0.02) possibly_damaging(0.821) TCGA-62-A46O-01 6 26235144 26235144 T C HIST1H1D Silent p.P6P 0.67 TCGA-62-A46O-01 6 26423303 26423303 G T BTN2A3P RNA 0.56 TCGA-62-A46O-01 6 29323760 29323760 G T OR5V1 Silent p.I71I 0.29 TCGA-62-A46O-01 6 30124746 30124746 G T TRIM10 Missense_Mutation p.P289T 0.53 deleterious(0.04) possibly_damaging(0.556) TCGA-62-A46O-01 6 30298598 30298598 T C TRIM39 Missense_Mutation p.L165P 0.14 deleterious(0.01) possibly_damaging(0.691) TCGA-62-A46O-01 6 30585657 30585657 A G MRPS18B Silent p.V5V 0.61 TCGA-62-A46O-01 6 31648052 31648052 C T LY6G5C Silent p.L33L 0.43 TCGA-62-A46O-01 6 33162510 33162510 G - RXRB Frame_Shift_Del p.I522Sfs*70 0.34 TCGA-62-A46O-01 6 35715382 35715382 G T ARMC12 Silent p.L243L 0.26 TCGA-62-A46O-01 6 38906629 38906629 A G DNAH8 Missense_Mutation p.T3741A 0.64 possibly_damaging(0.905) TCGA-62-A46O-01 6 38980307 38980307 G T DNAH8 Silent p.L4319L 0.61 TCGA-62-A46O-01 6 39046976 39046976 G T GLP1R Missense_Mutation p.R348I 0.47 deleterious(0.02) probably_damaging(1) TCGA-62-A46O-01 6 42196328 42196328 G T TRERF1 Missense_Mutation p.Q1120K 0.55 deleterious(0.02) benign(0.042) TCGA-62-A46O-01 6 42672234 42672234 G T PRPH2 Missense_Mutation p.H233N 0.21 deleterious(0) possibly_damaging(0.793) TCGA-62-A46O-01 6 43106878 43106878 C T PTK7 Missense_Mutation p.S464L 0.18 deleterious(0.03) benign(0.12) TCGA-62-A46O-01 6 43306102 43306102 G C ZNF318 Silent p.L1878L 0.22 TCGA-62-A46O-01 6 52009181 52009181 A G MIR206 RNA 0.46 TCGA-62-A46O-01 6 52357177 52357177 G C EFHC1 3'UTR 0.50 TCGA-62-A46O-01 6 52357178 52357178 G T EFHC1 3'UTR 0.50 TCGA-62-A46O-01 6 53365075 53365075 G C GCLC Silent p.L517L 0.23 TCGA-62-A46O-01 6 54212178 54212178 C - TINAG Frame_Shift_Del p.R255Efs*2 0.30 TCGA-62-A46O-01 6 54254767 54254767 C A TINAG 3'UTR 0.50 TCGA-62-A46O-01 6 56467786 56467786 T C DST Intron 0.67 TCGA-62-A46O-01 6 57012484 57012484 G A ZNF451 Missense_Mutation p.R534Q 0.16 tolerated(0.14) benign(0.025) TCGA-62-A46O-01 6 5999194 5999194 G T NRN1 3'UTR 0.81 TCGA-62-A46O-01 6 64288802 64288802 G T PTP4A1 Splice_Site p.X67_splice 0.29 TCGA-62-A46O-01 6 64288803 64288803 G T PTP4A1 Missense_Mutation p.D67Y 0.28 deleterious(0) possibly_damaging(0.84) TCGA-62-A46O-01 6 70070860 70070860 C A BAI3 Missense_Mutation p.P1232H 0.42 tolerated(0.13) probably_damaging(0.982) TCGA-62-A46O-01 6 73000426 73000426 G C RIMS1 Missense_Mutation p.R1200T 0.25 deleterious(0) possibly_damaging(0.48) TCGA-62-A46O-01 6 73000441 73000441 C T RIMS1 Missense_Mutation p.P1205L 0.27 tolerated(0.17) benign(0.001) TCGA-62-A46O-01 6 7579538 7579538 G C DSP Missense_Mutation p.E1039Q 0.93 probably_damaging(0.993) TCGA-62-A46O-01 6 75812366 75812366 G A COL12A1 Nonsense_Mutation p.Q2788* 0.27 TCGA-62-A46O-01 6 80838892 80838892 G T BCKDHB Missense_Mutation p.D97Y 0.51 deleterious(0) probably_damaging(0.998) TCGA-62-A46O-01 6 87796136 87796136 C T CGA Silent p.T35T 0.25 TCGA-62-A46O-01 6 90604758 90604758 C G GJA10 Missense_Mutation p.Q191E 0.57 deleterious(0.01) benign(0.403) TCGA-62-A46O-01 6 90648045 90648045 G C BACH2 Missense_Mutation p.Q621E 0.50 deleterious(0.01) benign(0.111) TCGA-62-A46O-01 6 94120564 94120564 T C EPHA7 Missense_Mutation p.R163G 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-62-A46O-01 6 97677032 97677032 C T MMS22L Missense_Mutation p.E593K 0.61 deleterious(0.03) probably_damaging(0.991) TCGA-62-A46O-01 7 100198377 100198377 A T FBXO24 Missense_Mutation p.Q571L 0.49 deleterious_low_confidence(0.01) benign(0.069) TCGA-62-A46O-01 7 100678989 100678989 C A MUC17 Missense_Mutation p.A1431D 0.46 unknown(0) TCGA-62-A46O-01 7 102755587 102755587 C T NAPEPLD Missense_Mutation p.E326K 0.18 deleterious(0.01) possibly_damaging(0.794) TCGA-62-A46O-01 7 103061818 103061818 C A SLC26A5 Missense_Mutation p.Q48H 0.27 tolerated(0.29) benign(0.309) TCGA-62-A46O-01 7 103163924 103163924 C A RELN Missense_Mutation p.Q2468H 0.29 deleterious(0.04) probably_damaging(0.951) TCGA-62-A46O-01 7 103290798 103290798 G T RELN Missense_Mutation p.A642E 0.44 tolerated(0.19) probably_damaging(0.997) TCGA-62-A46O-01 7 103341357 103341357 C T RELN Missense_Mutation p.R301K 0.55 tolerated(0.26) benign(0.016) TCGA-62-A46O-01 7 106508623 106508623 C A PIK3CG Missense_Mutation p.P206H 0.54 deleterious(0) probably_damaging(0.93) TCGA-62-A46O-01 7 106513315 106513315 A T PIK3CG Missense_Mutation p.E740V 0.35 deleterious(0.04) benign(0.13) TCGA-62-A46O-01 7 107406189 107406189 A G SLC26A3 3'UTR 0.33 TCGA-62-A46O-01 7 107791175 107791175 G A NRCAM Intron 0.62 TCGA-62-A46O-01 7 11022676 11022676 A T PHF14 Missense_Mutation p.S264C 0.60 deleterious(0) possibly_damaging(0.808) TCGA-62-A46O-01 7 120969399 120969399 C A WNT16 Missense_Mutation p.A18D 0.71 tolerated(0.56) possibly_damaging(0.665) TCGA-62-A46O-01 7 121756808 121756808 C T AASS Missense_Mutation p.R258K 0.08 tolerated(0.61) benign(0.02) TCGA-62-A46O-01 7 128493821 128493821 C T FLNC Silent p.I2138I 0.81 TCGA-62-A46O-01 7 129841876 129841876 T A TMEM209 Silent p.P129P 0.72 TCGA-62-A46O-01 7 138946159 138946159 A G UBN2 Missense_Mutation p.N356S 0.40 tolerated(0.58) benign(0.001) TCGA-62-A46O-01 7 139737570 139737570 C A PARP12 Missense_Mutation p.Q423H 0.82 deleterious(0.01) benign(0.429) TCGA-62-A46O-01 7 142566362 142566362 G T EPHB6 Silent p.L717L 0.89 TCGA-62-A46O-01 7 146818184 146818184 C A CNTNAP2 Missense_Mutation p.L290I 0.75 deleterious(0.01) benign(0.403) TCGA-62-A46O-01 7 151573652 151573652 G T PRKAG2 Silent p.G18G 0.86 TCGA-62-A46O-01 7 15433757 15433757 G T AGMO Missense_Mutation p.S219R 0.20 deleterious(0) probably_damaging(0.99) TCGA-62-A46O-01 7 155499568 155499568 G T RBM33 Missense_Mutation p.A252S 0.78 deleterious(0) possibly_damaging(0.58) TCGA-62-A46O-01 7 18687494 18687494 C T HDAC9 Silent p.S374S 0.56 TCGA-62-A46O-01 7 20738127 20738127 G T ABCB5 Missense_Mutation p.G703V 0.47 deleterious(0) probably_damaging(0.966) TCGA-62-A46O-01 7 2252891 2252891 C A MAD1L1 Silent p.L314L 0.62 TCGA-62-A46O-01 7 23213686 23213686 G T KLHL7 Missense_Mutation p.M510I 0.54 tolerated(0.47) benign(0.022) TCGA-62-A46O-01 7 23293864 23293864 G T GPNMB Silent p.L100L 0.38 TCGA-62-A46O-01 7 23358804 23358804 C A IGF2BP3 Missense_Mutation p.G425C 0.32 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 7 27204733 27204733 G T HOXA9 Missense_Mutation p.T115K 0.43 deleterious(0.01) benign(0.073) TCGA-62-A46O-01 7 27213044 27213044 C A HOXA10 Silent p.A294A 0.54 TCGA-62-A46O-01 7 2748864 2748864 G A AMZ1 Missense_Mutation p.V253I 0.26 tolerated(0.1) benign(0.062) TCGA-62-A46O-01 7 2979524 2979524 C A CARD11 Missense_Mutation p.E241D 0.51 deleterious(0.02) probably_damaging(0.995) TCGA-62-A46O-01 7 38299801 38299801 G A TRGC1 Missense_Mutation p.S137F 0.21 deleterious(0) probably_damaging(0.969) TCGA-62-A46O-01 7 42004817 42004817 G T GLI3 Missense_Mutation p.P1285H 0.47 tolerated_low_confidence(0.53) benign(0.061) TCGA-62-A46O-01 7 44266242 44266242 G C CAMK2B Silent p.S490S 0.56 TCGA-62-A46O-01 7 45148539 45148539 C A TBRG4 Missense_Mutation p.A100S 0.30 tolerated(0.06) benign(0.226) TCGA-62-A46O-01 7 48046905 48046905 C A SUN3 Nonsense_Mutation p.E117* 0.62 TCGA-62-A46O-01 7 48046906 48046906 C A SUN3 Silent p.L116L 0.62 TCGA-62-A46O-01 7 50597015 50597015 A G DDC Missense_Mutation p.V154A 0.51 deleterious(0) possibly_damaging(0.5) TCGA-62-A46O-01 7 54617605 54617605 G C VSTM2A Missense_Mutation p.E126Q 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-62-A46O-01 7 54617747 54617747 G T VSTM2A Missense_Mutation p.R173L 0.50 tolerated(0.07) probably_damaging(0.998) TCGA-62-A46O-01 7 66240221 66240221 C T KCTD7 Missense_Mutation p.R63W 0.71 deleterious(0) probably_damaging(0.937) TCGA-62-A46O-01 7 71134963 71134963 G T WBSCR17 Nonsense_Mutation p.G425* 0.77 TCGA-62-A46O-01 7 7483254 7483254 G T COL28A1 Missense_Mutation p.P538T 0.43 tolerated(0.05) probably_damaging(0.999) TCGA-62-A46O-01 7 75070272 75070272 C A POM121C Nonsense_Mutation p.E63* 0.74 TCGA-62-A46O-01 7 7612605 7612605 G C MIOS Missense_Mutation p.E167Q 0.30 tolerated(0.6) benign(0.081) TCGA-62-A46O-01 7 83095861 83095861 C A SEMA3E Silent p.L131L 0.50 TCGA-62-A46O-01 7 87038681 87038681 T A ABCB4 Silent p.A984A 0.38 TCGA-62-A46O-01 7 87051465 87051465 A T ABCB4 Missense_Mutation p.I763N 0.25 deleterious(0) possibly_damaging(0.739) TCGA-62-A46O-01 7 87196164 87196164 A T ABCB1 Missense_Mutation p.M156K 0.37 deleterious(0) probably_damaging(0.99) TCGA-62-A46O-01 7 90894473 90894474 - GCT FZD1 In_Frame_Ins p.P93_Q94insL 0.54 TCGA-62-A46O-01 7 92761348 92761348 A G SAMD9L Missense_Mutation p.C1313R 0.36 tolerated(0.24) benign(0) TCGA-62-A46O-01 7 94050358 94050358 G C COL1A2 Missense_Mutation p.G778A 0.39 unknown(0) TCGA-62-A46O-01 7 94059612 94059612 A G COL1A2 Silent p.P1336P 0.40 TCGA-62-A46O-01 7 99526503 99526503 G T GJC3 Missense_Mutation p.S247R 0.30 tolerated(0.13) benign(0.024) TCGA-62-A46O-01 7 99621041 99621041 G T ZKSCAN1 Splice_Site 0.38 TCGA-62-A46O-01 7 99786619 99786619 G A STAG3 Missense_Mutation p.R232H 0.06 deleterious(0) probably_damaging(0.999) TCGA-62-A46O-01 8 104240380 104240380 C A BAALC 3'UTR 0.36 TCGA-62-A46O-01 8 10468122 10468122 G C RP1L1 Missense_Mutation p.D1162E 0.40 benign(0.332) TCGA-62-A46O-01 8 10469343 10469343 G T RP1L1 Missense_Mutation p.H755Q 0.36 benign(0.03) TCGA-62-A46O-01 8 105160889 105160889 G T RIMS2 Intron 0.39 TCGA-62-A46O-01 8 105361229 105361229 G A DCSTAMP Nonsense_Mutation p.W150* 0.49 TCGA-62-A46O-01 8 10583190 10583190 C A SOX7 3'UTR 0.30 TCGA-62-A46O-01 8 110131437 110131437 C A TRHR Missense_Mutation p.P317Q 0.32 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 8 110505897 110505897 G A PKHD1L1 Missense_Mutation p.R3415K 0.22 tolerated(0.29) benign(0.002) TCGA-62-A46O-01 8 113277807 113277807 C G CSMD3 Missense_Mutation p.G3174A 0.37 deleterious(0.01) benign(0.431) TCGA-62-A46O-01 8 113662579 113662579 C A CSMD3 Splice_Site p.X1002_splice 0.38 TCGA-62-A46O-01 8 120118436 120118437 - T COLEC10 3'UTR 0.27 TCGA-62-A46O-01 8 120435207 120435207 C A NOV Silent p.P303P 0.46 TCGA-62-A46O-01 8 120575108 120575108 C A ENPP2 Nonsense_Mutation p.E856* 0.46 TCGA-62-A46O-01 8 121262880 121262880 T G COL14A1 Missense_Mutation p.F876C 0.37 deleterious(0) probably_damaging(0.98) TCGA-62-A46O-01 8 122641414 122641414 T G HAS2 Missense_Mutation p.H56P 0.54 deleterious(0) probably_damaging(0.999) TCGA-62-A46O-01 8 124204100 124204100 G T FAM83A Nonsense_Mutation p.E180* 0.47 TCGA-62-A46O-01 8 124267704 124267704 C G ZHX1 Missense_Mutation p.E161D 0.46 tolerated(0.18) probably_damaging(0.957) TCGA-62-A46O-01 8 124268027 124268027 C T ZHX1 Missense_Mutation p.E54K 0.50 deleterious(0.01) benign(0.06) TCGA-62-A46O-01 8 124992820 124992820 C T FER1L6 Silent p.F393F 0.50 TCGA-62-A46O-01 8 125061922 125061922 C A FER1L6 Silent p.P933P 0.29 TCGA-62-A46O-01 8 125072707 125072707 C G FER1L6 Intron 0.50 TCGA-62-A46O-01 8 125487417 125487417 G T RNF139 Nonsense_Mutation p.E23* 0.34 TCGA-62-A46O-01 8 13357552 13357552 C A DLC1 Missense_Mutation p.W10L 0.28 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-62-A46O-01 8 141321447 141321447 C A TRAPPC9 Nonsense_Mutation p.E606* 0.48 TCGA-62-A46O-01 8 141669763 141669763 C T PTK2 Silent p.Q1000Q 0.48 TCGA-62-A46O-01 8 143958503 143958503 C A CYP11B1 Silent p.L177L 0.31 TCGA-62-A46O-01 8 143958505 143958505 G A CYP11B1 Silent p.L177L 0.30 TCGA-62-A46O-01 8 144681377 144681377 G T TIGD5 Missense_Mutation p.R435L 0.35 deleterious(0) probably_damaging(0.927) TCGA-62-A46O-01 8 144942667 144942667 C G EPPK1 Missense_Mutation p.M1585I 0.40 benign(0.266) TCGA-62-A46O-01 8 145138862 145138862 G C GPAA1 Missense_Mutation p.D179H 0.09 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 8 145139778 145139778 G T GPAA1 Missense_Mutation p.K388N 0.11 deleterious(0.04) probably_damaging(0.98) TCGA-62-A46O-01 8 145625643 145625643 G A CPSF1 Missense_Mutation p.S285L 0.30 deleterious(0) probably_damaging(0.961) TCGA-62-A46O-01 8 145626918 145626918 G A CPSF1 Missense_Mutation p.S71F 0.56 deleterious(0) possibly_damaging(0.823) TCGA-62-A46O-01 8 145736017 145736017 C T MFSD3 Silent p.F289F 0.44 TCGA-62-A46O-01 8 1575002 1575002 G T DLGAP2 Missense_Mutation p.Q433H 0.30 tolerated(0.06) probably_damaging(0.91) TCGA-62-A46O-01 8 20107619 20107619 T A LZTS1 Missense_Mutation p.N469Y 0.54 deleterious(0.01) benign(0.424) TCGA-62-A46O-01 8 23538662 23538662 C A NKX3-1 3'UTR 0.40 TCGA-62-A46O-01 8 25340958 25340958 G T CDCA2 Missense_Mutation p.S359I 0.24 deleterious(0.03) possibly_damaging(0.865) TCGA-62-A46O-01 8 30703455 30703455 C T TEX15 Missense_Mutation p.G1027S 0.24 tolerated(0.24) benign(0.341) TCGA-62-A46O-01 8 38146170 38146170 C A WHSC1L1 Silent p.S1112S 0.33 TCGA-62-A46O-01 8 3889597 3889597 T A CSMD1 Missense_Mutation p.N147I 0.44 possibly_damaging(0.676) TCGA-62-A46O-01 8 39872952 39872952 C A IDO2 Missense_Mutation p.T365N 0.45 tolerated(0.06) possibly_damaging(0.784) TCGA-62-A46O-01 8 42977312 42977312 G T POMK Missense_Mutation p.M115I 0.15 tolerated(0.12) benign(0.077) TCGA-62-A46O-01 8 42977316 42977316 G T POMK Missense_Mutation p.D117Y 0.17 deleterious(0) probably_damaging(0.954) TCGA-62-A46O-01 8 6272336 6272336 C T MCPH1 Silent p.G55G 0.28 TCGA-62-A46O-01 8 66516684 66516684 C G ARMC1 Missense_Mutation p.G265A 0.52 tolerated(0.08) benign(0.01) TCGA-62-A46O-01 8 70585273 70585273 C T SLCO5A1 Missense_Mutation p.R793K 0.48 tolerated_low_confidence(0.05) benign(0.04) TCGA-62-A46O-01 8 71520587 71520587 C T TRAM1 5'UTR 0.47 TCGA-62-A46O-01 8 8234363 8234363 T G SGK223 Missense_Mutation p.Q519P 0.18 benign(0.002) TCGA-62-A46O-01 8 87226589 87226589 C A SLC7A13 3'UTR 0.38 TCGA-62-A46O-01 8 87442962 87442962 C T WWP1 Missense_Mutation p.P457S 0.33 deleterious(0.04) probably_damaging(0.91) TCGA-62-A46O-01 8 9567471 9567471 G T TNKS Missense_Mutation p.A529S 0.53 deleterious(0.02) probably_damaging(0.93) TCGA-62-A46O-01 8 99168328 99168328 C T POP1 Missense_Mutation p.P703L 0.35 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 9 103348606 103348606 G T MURC Missense_Mutation p.R323M 0.81 tolerated_low_confidence(0.08) benign(0.424) TCGA-62-A46O-01 9 104193180 104193180 C A ALDOB Splice_Site 0.85 TCGA-62-A46O-01 9 104433106 104433106 C - GRIN3A Frame_Shift_Del p.E530Rfs*2 0.43 TCGA-62-A46O-01 9 118138926 118138926 A G DEC1 5'UTR 0.89 TCGA-62-A46O-01 9 118989708 118989708 A G PAPPA Splice_Site p.X704_splice 0.80 TCGA-62-A46O-01 9 131388123 131388123 C G SPTAN1 Missense_Mutation p.L2049V 0.71 tolerated(1) benign(0.051) TCGA-62-A46O-01 9 132623839 132623839 A T USP20 Missense_Mutation p.N149Y 0.79 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 9 136323185 136323185 G T ADAMTS13 Missense_Mutation p.G1349V 0.68 tolerated(0.1) benign(0.147) TCGA-62-A46O-01 9 136403486 136403486 G C ADAMTSL2 Silent p.P83P 0.74 TCGA-62-A46O-01 9 139361417 139361417 G T SEC16A Missense_Mutation p.F1307L 0.69 deleterious(0.02) benign(0.061) TCGA-62-A46O-01 9 14746990 14746990 A G FREM1 Silent p.F2023F 0.80 TCGA-62-A46O-01 9 2717673 2717673 C A KCNV2 5'UTR 0.92 TCGA-62-A46O-01 9 35092125 35092125 G A PIGO Nonsense_Mutation p.Q587* 0.14 TCGA-62-A46O-01 9 35869666 35869666 G A OR13J1 Silent p.L245L 0.81 TCGA-62-A46O-01 9 73296463 73296463 T G TRPM3 Missense_Mutation p.H435P 0.79 tolerated(0.11) probably_damaging(0.998) TCGA-62-A46O-01 9 84531692 84531692 G T SPATA31D5P RNA 0.83 TCGA-62-A46O-01 9 84547502 84547502 T A RP11-383M4.6 Intron 0.67 TCGA-62-A46O-01 9 87570333 87570333 C T NTRK2 Silent p.R691R 0.17 TCGA-62-A46O-01 9 91793333 91793333 C A SHC3 Missense_Mutation p.V15L 0.89 tolerated(0.12) probably_damaging(0.935) TCGA-62-A46O-01 X 100402993 100402993 C T CENPI Missense_Mutation p.S646L 0.62 deleterious(0.03) benign(0.013) TCGA-62-A46O-01 X 102931112 102931112 C A MORF4L2 Nonsense_Mutation p.E282* 0.82 TCGA-62-A46O-01 X 114242542 114242542 G A IL13RA2 Missense_Mutation p.S317L 0.71 deleterious(0) possibly_damaging(0.855) TCGA-62-A46O-01 X 115303502 115303502 G T AGTR2 5'UTR 0.61 TCGA-62-A46O-01 X 119666435 119666435 T A CUL4B Missense_Mutation p.R779W 0.76 deleterious(0) probably_damaging(0.956) TCGA-62-A46O-01 X 128599691 128599691 G A SMARCA1 Missense_Mutation p.P946S 0.82 deleterious(0) probably_damaging(0.989) TCGA-62-A46O-01 X 12905118 12905118 C A TLR7 Silent p.T497T 0.79 TCGA-62-A46O-01 X 129363013 129363013 T A ZNF280C Missense_Mutation p.Y362F 0.82 tolerated(1) benign(0.063) TCGA-62-A46O-01 X 132458535 132458535 C T GPC4 Missense_Mutation p.E117K 0.67 deleterious(0) probably_damaging(0.996) TCGA-62-A46O-01 X 134989482 134989482 C A SAGE1 Silent p.V296V 0.70 TCGA-62-A46O-01 X 136112985 136112985 G T GPR101 Missense_Mutation p.S283R 0.75 tolerated(0.19) benign(0.139) TCGA-62-A46O-01 X 141291432 141291432 C A MAGEC2 Missense_Mutation p.E114D 0.82 tolerated(0.24) possibly_damaging(0.874) TCGA-62-A46O-01 X 151093112 151093112 G T MAGEA4 3'UTR 0.88 TCGA-62-A46O-01 X 151935160 151935160 C A MAGEA3 3'UTR 0.69 TCGA-62-A46O-01 X 153595008 153595008 C A FLNA Splice_Site p.X330_splice 0.71 TCGA-62-A46O-01 X 15568067 15568067 C A BMX Missense_Mutation p.P634T 0.66 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 X 21675157 21675157 G T KLHL34 Silent p.G250G 0.56 TCGA-62-A46O-01 X 26157881 26157881 C A MAGEB18 Missense_Mutation p.P260H 0.55 deleterious(0) probably_damaging(0.992) TCGA-62-A46O-01 X 26157882 26157882 C A MAGEB18 Silent p.P260P 0.55 TCGA-62-A46O-01 X 32407768 32407768 C A DMD Missense_Mutation p.M1456I 0.71 benign(0.055) TCGA-62-A46O-01 X 34149833 34149833 C A FAM47A Missense_Mutation p.C188F 0.66 tolerated(0.71) probably_damaging(0.989) TCGA-62-A46O-01 X 37026732 37026732 C A FAM47C Silent p.L83L 0.78 TCGA-62-A46O-01 X 37028630 37028630 C A FAM47C Missense_Mutation p.A716E 0.78 tolerated(0.13) benign(0.016) TCGA-62-A46O-01 X 47308730 47308730 G C ZNF41 Missense_Mutation p.R147G 0.35 tolerated(0.17) benign(0.01) TCGA-62-A46O-01 X 48661318 48661318 C G HDAC6 Missense_Mutation p.P45R 0.50 deleterious(0.01) possibly_damaging(0.793) TCGA-62-A46O-01 X 48673864 48673864 C A HDAC6 Missense_Mutation p.P408H 0.46 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 X 48771840 48771840 C - PIM2 Frame_Shift_Del p.V202Cfs*61 0.24 TCGA-62-A46O-01 X 48933083 48933083 C A WDR45 Missense_Mutation p.S257I 0.47 deleterious(0) probably_damaging(0.966) TCGA-62-A46O-01 X 49054278 49054278 A T SYP Missense_Mutation p.F41L 0.54 deleterious(0) probably_damaging(0.998) TCGA-62-A46O-01 X 49127236 49127236 C G PPP1R3F Missense_Mutation p.Q302E 0.55 tolerated(0.15) probably_damaging(0.977) TCGA-62-A46O-01 X 49173666 49173666 A T GAGE10 Missense_Mutation p.Q76L 0.47 deleterious(0) probably_damaging(0.997) TCGA-62-A46O-01 X 50094260 50094260 C A CCNB3 Nonsense_Mutation p.Y1327* 0.50 TCGA-62-A46O-01 X 53106628 53106628 G T GPR173 Missense_Mutation p.M275I 0.14 tolerated(0.11) benign(0.017) TCGA-62-A46O-01 X 53114002 53114002 C A TSPYL2 Nonsense_Mutation p.Y317* 0.25 TCGA-62-A46O-01 X 53596787 53596787 C T HUWE1 Missense_Mutation p.D2105N 0.23 probably_damaging(0.918) TCGA-62-A46O-01 X 54841706 54841706 G - MAGED2 Frame_Shift_Del p.A472Qfs*12 0.14 TCGA-62-A46O-01 X 55513962 55513962 C A USP51 Missense_Mutation p.G471W 0.45 deleterious(0) probably_damaging(0.946) TCGA-62-A46O-01 X 56590574 56590574 C A UBQLN2 Missense_Mutation p.H90N 0.52 tolerated(0.06) probably_damaging(0.999) TCGA-62-A46O-01 X 63412080 63412080 C A AMER1 Missense_Mutation p.V363L 0.35 deleterious(0) probably_damaging(0.945) TCGA-62-A46O-01 X 63412081 63412081 C T AMER1 Silent p.L362L 0.36 TCGA-62-A46O-01 X 65390483 65390483 C A HEPH Missense_Mutation p.A78D 0.40 tolerated(0.38) benign(0.424) TCGA-62-A46O-01 X 65390484 65390484 C A HEPH Silent p.A78A 0.40 TCGA-62-A46O-01 X 65479982 65479982 C G HEPH Missense_Mutation p.P1080R 0.36 deleterious(0) probably_damaging(1) TCGA-62-A46O-01 X 66943716 66943716 C G AR 3'UTR 0.38 TCGA-62-A46O-01 X 68060341 68060341 G C EFNB1 Silent p.A295A 0.50 TCGA-62-A46O-01 X 69637807 69637807 G T KIF4A Missense_Mutation p.D1109Y 0.36 deleterious(0.02) benign(0.281) TCGA-62-A46O-01 X 70357793 70357793 G T MED12 Missense_Mutation p.R2015M 0.23 probably_damaging(0.996) TCGA-62-A46O-01 X 70357794 70357794 G T MED12 Splice_Site p.X2015_splice 0.23 TCGA-62-A46O-01 X 70674707 70674707 G C TAF1 Missense_Mutation p.Q1666H 0.43 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-62-A46O-01 X 75649195 75649195 G A MAGEE1 Missense_Mutation p.G291E 0.33 tolerated_low_confidence(0.12) possibly_damaging(0.819) TCGA-62-A46O-01 X 76938718 76938718 G C ATRX Nonsense_Mutation p.S677* 0.40 TCGA-62-A46O-01 X 77913662 77913662 G C ZCCHC5 Missense_Mutation p.Q86E 0.64 tolerated_low_confidence(0.1) benign(0.003) TCGA-62-A46O-01 X 89177877 89177877 C A TGIF2LX 3'UTR 0.38 TCGA-62-A46O-01 X 96194343 96194343 A G DIAPH2 Silent p.L429L 0.36 TCGA-62-A46O-01 X 99933712 99933712 T C SYTL4 Intron 1.00 TCGA-62-A46P-01 10 105206866 105206866 G T CALHM2 3'UTR 0.18 TCGA-62-A46P-01 10 114925398 114925398 G T TCF7L2 Silent p.S492S 0.31 TCGA-62-A46P-01 10 25887224 25887224 A T GPR158 Missense_Mutation p.K890I 0.41 deleterious(0) probably_damaging(0.984) TCGA-62-A46P-01 10 50951015 50951015 C T OGDHL Missense_Mutation p.R624H 0.20 deleterious(0) probably_damaging(0.996) TCGA-62-A46P-01 10 55569092 55569092 C A PCDH15 Missense_Mutation p.R507L 0.29 deleterious_low_confidence(0) unknown(0) TCGA-62-A46P-01 10 63850781 63850781 C A ARID5B Missense_Mutation p.T520K 0.43 tolerated(0.6) benign(0) TCGA-62-A46P-01 10 70451200 70451200 G T TET1 Missense_Mutation p.A2014S 0.34 tolerated(1) benign(0.026) TCGA-62-A46P-01 10 72517992 72517992 G T ADAMTS14 Missense_Mutation p.Q1046H 0.30 tolerated(0.05) benign(0.006) TCGA-62-A46P-01 10 73206101 73206101 A T CDH23 Missense_Mutation p.T32S 0.26 tolerated(0.36) benign(0.017) TCGA-62-A46P-01 10 73498310 73498310 C A CDH23 Missense_Mutation p.S1427Y 0.26 deleterious(0.03) probably_damaging(0.977) TCGA-62-A46P-01 10 75674567 75674567 G A PLAU Missense_Mutation p.C288Y 0.27 deleterious(0) probably_damaging(1) TCGA-62-A46P-01 10 77158972 77158972 C A ZNF503 Silent p.P492P 0.29 TCGA-62-A46P-01 10 78646984 78646984 T A KCNMA1 3'Flank 0.35 TCGA-62-A46P-01 10 98156977 98156977 G T TLL2 Missense_Mutation p.N450K 0.34 tolerated(0.12) benign(0.246) TCGA-62-A46P-01 11 106681040 106681040 C A GUCY1A2 Missense_Mutation p.E457D 0.30 deleterious(0) probably_damaging(0.996) TCGA-62-A46P-01 11 117342708 117342708 G T DSCAML1 Silent p.T1003T 0.25 TCGA-62-A46P-01 11 118370085 118370085 G A KMT2A Missense_Mutation p.R2010K 0.09 probably_damaging(0.977) TCGA-62-A46P-01 11 123508996 123508996 A G SCN3B Missense_Mutation p.M161T 0.36 tolerated(0.06) benign(0.012) TCGA-62-A46P-01 11 1628987 1628987 C A KRTAP5-3 Missense_Mutation p.G210V 0.23 tolerated(0.29) unknown(0) TCGA-62-A46P-01 11 1628988 1628988 C A KRTAP5-3 Missense_Mutation p.G210W 0.23 deleterious(0.02) unknown(0) TCGA-62-A46P-01 11 26463640 26463640 C A ANO3 Silent p.S74S 0.30 TCGA-62-A46P-01 11 31671713 31671713 G T ELP4 Nonsense_Mutation p.E363* 0.13 TCGA-62-A46P-01 11 32622378 32622378 G T EIF3M Missense_Mutation p.A315S 0.24 deleterious(0.02) probably_damaging(0.996) TCGA-62-A46P-01 11 46775007 46775009 CCA - CKAP5 In_Frame_Del p.G1637del 0.11 TCGA-62-A46P-01 11 55111092 55111092 G C OR4A16 Missense_Mutation p.C139S 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.58) TCGA-62-A46P-01 11 55681485 55681485 T A OR5W2 Missense_Mutation p.T192S 0.39 deleterious(0) possibly_damaging(0.774) TCGA-62-A46P-01 11 55904970 55904970 A T OR8J3 Silent p.T75T 0.14 TCGA-62-A46P-01 11 56020129 56020129 C A OR5T3 Missense_Mutation p.H152N 0.34 deleterious(0.02) benign(0.002) TCGA-62-A46P-01 11 56143984 56143984 G C OR8U1 Missense_Mutation p.K295N 0.29 deleterious(0) possibly_damaging(0.694) TCGA-62-A46P-01 11 57996080 57996080 A C OR10Q1 Missense_Mutation p.L90V 0.44 tolerated(0.06) benign(0.001) TCGA-62-A46P-01 11 60885736 60885736 C A CD5 Missense_Mutation p.Q62K 0.39 tolerated(0.38) benign(0.281) TCGA-62-A46P-01 11 61729910 61729910 C A BEST1 Missense_Mutation p.N368K 0.25 tolerated(0.28) benign(0.007) TCGA-62-A46P-01 11 62932091 62932091 C G SLC22A25 Missense_Mutation p.R434P 0.24 deleterious(0) probably_damaging(0.994) TCGA-62-A46P-01 11 68518116 68518116 G C MTL5 Missense_Mutation p.P5A 0.45 tolerated_low_confidence(0.09) unknown(0) TCGA-62-A46P-01 11 92592421 92592421 G A FAT3 Missense_Mutation p.R3864H 0.17 probably_damaging(0.999) TCGA-62-A46P-01 11 977185 977185 G T AP2A2 Missense_Mutation p.W188C 0.35 deleterious(0) probably_damaging(0.993) TCGA-62-A46P-01 12 104390540 104390540 C T GLT8D2 Silent p.Q191Q 0.18 TCGA-62-A46P-01 12 10467455 10467455 G T KLRD1 3'UTR 0.19 TCGA-62-A46P-01 12 111758353 111758353 C A CUX2 Missense_Mutation p.P847H 0.19 tolerated(0.33) benign(0.001) TCGA-62-A46P-01 12 125613989 125613989 A G AACS Missense_Mutation p.Y511C 0.03 deleterious(0) probably_damaging(0.999) TCGA-62-A46P-01 12 130649227 130649227 C G FZD10 Missense_Mutation p.C580W 0.53 deleterious_low_confidence(0.01) probably_damaging(0.973) TCGA-62-A46P-01 12 132198709 132198709 G T SFSWAP Silent p.A104A 0.30 TCGA-62-A46P-01 12 133363350 133363350 C A GOLGA3 Missense_Mutation p.Q945H 0.34 deleterious(0.02) benign(0.073) TCGA-62-A46P-01 12 1702917 1702917 T A FBXL14 Missense_Mutation p.N106Y 0.07 tolerated(0.05) benign(0.288) TCGA-62-A46P-01 12 2017072 2017072 G T CACNA2D4 Missense_Mutation p.S206R 0.31 deleterious(0.05) possibly_damaging(0.545) TCGA-62-A46P-01 12 31632607 31632607 C A DENND5B Missense_Mutation p.A274S 0.75 tolerated(0.05) benign(0.297) TCGA-62-A46P-01 12 45169810 45169810 A - NELL2 Frame_Shift_Del p.C346Afs*2 0.15 TCGA-62-A46P-01 12 46298746 46298746 C A ARID2 Nonsense_Mutation p.S1798* 0.19 TCGA-62-A46P-01 12 4919562 4919562 G T KCNA6 Nonsense_Mutation p.E119* 0.34 TCGA-62-A46P-01 12 50045036 50045036 A T FMNL3 Missense_Mutation p.L571Q 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-62-A46P-01 12 51213568 51213568 A T ATF1 3'UTR 0.23 TCGA-62-A46P-01 12 5154588 5154588 G T KCNA5 Missense_Mutation p.K425N 0.27 deleterious(0) probably_damaging(0.959) TCGA-62-A46P-01 12 52967152 52967152 C T KRT74 Missense_Mutation p.R137H 0.20 deleterious(0.03) benign(0.075) TCGA-62-A46P-01 12 57594886 57594886 G T LRP1 Missense_Mutation p.R3432L 0.40 probably_damaging(0.972) TCGA-62-A46P-01 12 68619419 68619419 G T IL26 Missense_Mutation p.Q40K 0.20 tolerated(0.3) benign(0.072) TCGA-62-A46P-01 12 7084882 7084882 A G EMG1 Missense_Mutation p.M215V 0.27 tolerated(0.46) TCGA-62-A46P-01 12 75434969 75434969 G T KCNC2 3'UTR 0.31 TCGA-62-A46P-01 12 75692561 75692561 C G CAPS2 Splice_Site p.X336_splice 0.14 TCGA-62-A46P-01 12 78571078 78571078 C A NAV3 Nonsense_Mutation p.S1761* 0.48 TCGA-62-A46P-01 12 80199487 80199487 C A PPP1R12A Missense_Mutation p.A629S 0.67 tolerated(0.4) benign(0.061) TCGA-62-A46P-01 12 80199488 80199488 C T PPP1R12A Silent p.T628T 0.67 TCGA-62-A46P-01 12 8084037 8084037 C A SLC2A3 Missense_Mutation p.G105V 0.11 tolerated(0.13) possibly_damaging(0.651) TCGA-62-A46P-01 12 85546922 85546922 A T LRRIQ1 Nonsense_Mutation p.R1514* 0.33 TCGA-62-A46P-01 12 95922617 95922617 T C USP44 Silent p.L530L 0.25 TCGA-62-A46P-01 13 101844306 101844306 C T NALCN Missense_Mutation p.A576T 0.38 deleterious(0) probably_damaging(0.996) TCGA-62-A46P-01 13 103698558 103698558 C A SLC10A2 Missense_Mutation p.E324D 0.32 tolerated(0.34) benign(0.001) TCGA-62-A46P-01 13 113750896 113750896 G C MCF2L Missense_Mutation p.G1074A 0.31 deleterious(0.04) benign(0.214) TCGA-62-A46P-01 13 21549420 21549420 G A LATS2 Silent p.C952C 0.36 TCGA-62-A46P-01 13 33703905 33703905 G A STARD13 Silent p.C303C 0.10 TCGA-62-A46P-01 13 39264162 39264162 A G FREM2 Missense_Mutation p.D894G 0.44 deleterious(0) probably_damaging(0.996) TCGA-62-A46P-01 13 43181055 43181055 G A TNFSF11 3'UTR 0.43 TCGA-62-A46P-01 13 53035933 53035933 G T CKAP2 Missense_Mutation p.R325S 0.24 deleterious(0.01) benign(0.173) TCGA-62-A46P-01 14 105412317 105412317 G C AHNAK2 Silent p.A3157A 0.31 TCGA-62-A46P-01 14 105419147 105419147 G C AHNAK2 Missense_Mutation p.L881V 0.04 benign(0.101) TCGA-62-A46P-01 14 106307378 106307378 C A IGHD Nonsense_Mutation p.E221* 0.27 TCGA-62-A46P-01 14 20612301 20612301 T A OR4N5 Missense_Mutation p.M136K 0.26 deleterious(0.01) benign(0.013) TCGA-62-A46P-01 14 21501986 21501986 C G RP11-998D10.1 Missense_Mutation p.R108G 0.23 unknown(0) TCGA-62-A46P-01 14 21501992 21501992 G A RP11-998D10.1 Missense_Mutation p.E110K 0.22 unknown(0) TCGA-62-A46P-01 14 22111621 22111621 C A TRAV1-2 Missense_Mutation p.N47K 0.35 tolerated(0.25) benign(0.073) TCGA-62-A46P-01 14 23861840 23861840 C A MYH6 Missense_Mutation p.Q1091H 0.08 tolerated(0.05) benign(0.018) TCGA-62-A46P-01 14 31118787 31118787 G C SCFD1 Missense_Mutation p.V223L 0.33 tolerated(0.26) benign(0.009) TCGA-62-A46P-01 14 31142507 31142507 C G SCFD1 Missense_Mutation p.S347C 0.35 deleterious(0.05) possibly_damaging(0.684) TCGA-62-A46P-01 14 57268733 57268733 C A OTX2 Missense_Mutation p.G205V 0.40 deleterious(0) possibly_damaging(0.905) TCGA-62-A46P-01 14 62541886 62541886 A T SYT16 Missense_Mutation p.E257V 0.44 deleterious(0.02) benign(0.16) TCGA-62-A46P-01 14 70991395 70991395 C A ADAM20 Missense_Mutation p.G77V 0.38 deleterious(0.02) possibly_damaging(0.535) TCGA-62-A46P-01 14 74753460 74753460 C A ABCD4 Missense_Mutation p.G566C 0.12 tolerated(1) benign(0) TCGA-62-A46P-01 14 91925047 91925047 G T SMEK1 3'UTR 0.18 TCGA-62-A46P-01 14 94417524 94417524 C T ASB2 Missense_Mutation p.R234H 0.08 tolerated(0.09) possibly_damaging(0.745) TCGA-62-A46P-01 14 96798909 96798909 T C ATG2B Missense_Mutation p.M431V 0.11 tolerated(1) benign(0) TCGA-62-A46P-01 15 25321123 25321123 A T SNORD116-11 RNA 0.18 TCGA-62-A46P-01 15 25423890 25423890 G T SNORD115-5 RNA 0.32 TCGA-62-A46P-01 15 27188537 27188537 G T GABRA5 Missense_Mutation p.W351C 0.20 deleterious(0.04) probably_damaging(1) TCGA-62-A46P-01 15 51502966 51502966 G C CYP19A1 3'UTR 0.36 TCGA-62-A46P-01 15 59185114 59185114 C A SLTM Missense_Mutation p.R627L 0.41 deleterious(0) unknown(0) TCGA-62-A46P-01 15 64067692 64067692 T C HERC1 Missense_Mutation p.N44S 0.36 probably_damaging(0.971) TCGA-62-A46P-01 15 65114546 65114546 G C PIF1 Missense_Mutation p.P246A 0.33 deleterious(0.01) probably_damaging(1) TCGA-62-A46P-01 15 78452483 78452483 G C IDH3A Missense_Mutation p.G75A 0.40 tolerated(0.33) benign(0.314) TCGA-62-A46P-01 16 20330959 20330959 G T GP2 Silent p.A333A 0.26 TCGA-62-A46P-01 16 20360528 20360528 C A UMOD Missense_Mutation p.C32F 0.37 deleterious(0) probably_damaging(1) TCGA-62-A46P-01 16 28884058 28884058 G T SH2B1 Intron 0.40 TCGA-62-A46P-01 16 29913098 29913098 C T ASPHD1 Missense_Mutation p.P269L 0.33 deleterious(0) probably_damaging(0.998) TCGA-62-A46P-01 16 31475978 31475978 G T ARMC5 Missense_Mutation p.G545V 0.33 tolerated(0.12) possibly_damaging(0.795) TCGA-62-A46P-01 16 32893960 32893960 G T RP11-989E6.3 5'Flank 0.17 TCGA-62-A46P-01 16 48227811 48227811 G A ABCC11 Silent p.Y829Y 0.30 TCGA-62-A46P-01 16 55806346 55806346 T C CES1P1 RNA 0.27 TCGA-62-A46P-01 16 55909212 55909212 C A CES5A Intron 0.42 TCGA-62-A46P-01 16 74657875 74657875 T A RFWD3 Missense_Mutation p.Y759F 0.06 tolerated(0.55) benign(0.005) TCGA-62-A46P-01 16 74657964 74657964 C A RFWD3 Missense_Mutation p.W729C 0.15 deleterious(0) probably_damaging(0.94) TCGA-62-A46P-01 16 75127510 75127510 C G ZNRF1 Missense_Mutation p.D155E 0.17 tolerated(0.1) benign(0.03) TCGA-62-A46P-01 16 75563126 75563126 G C CHST5 Missense_Mutation p.A386G 0.29 deleterious(0) benign(0.004) TCGA-62-A46P-01 16 89849313 89849313 T A FANCA Missense_Mutation p.N527I 0.30 deleterious(0) possibly_damaging(0.703) TCGA-62-A46P-01 17 10265724 10265724 C T MYH13 Missense_Mutation p.A101T 0.40 deleterious(0.04) benign(0.271) TCGA-62-A46P-01 17 10305081 10305081 C A MYH8 Missense_Mutation p.A904S 0.30 deleterious(0.05) benign(0.056) TCGA-62-A46P-01 17 27010100 27010100 A T SUPT6H Missense_Mutation p.K623I 0.33 deleterious(0.02) benign(0.433) TCGA-62-A46P-01 17 3195416 3195416 C - OR3A1 Frame_Shift_Del p.C154Lfs*7 0.19 TCGA-62-A46P-01 17 32598876 32598876 T A CCL7 3'UTR 0.38 TCGA-62-A46P-01 17 32685216 32685216 T A CCL13 3'UTR 0.57 TCGA-62-A46P-01 17 3680873 3680873 C A ITGAE Missense_Mutation p.S39I 0.31 deleterious(0) possibly_damaging(0.878) TCGA-62-A46P-01 17 38296701 38296701 C A CASC3 5'UTR 0.38 TCGA-62-A46P-01 17 39120027 39120027 G T KRT39 Missense_Mutation p.A187D 0.35 deleterious(0) probably_damaging(0.93) TCGA-62-A46P-01 17 3917731 3917731 C G ZZEF1 Missense_Mutation p.E2742Q 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-62-A46P-01 17 39520199 39520199 G T KRT33B Silent p.P368P 0.30 TCGA-62-A46P-01 17 39633393 39633393 G A KRT35 Missense_Mutation p.P428L 0.27 deleterious(0.04) benign(0.017) TCGA-62-A46P-01 17 46622203 46622203 G T HOXB2 Missense_Mutation p.S24Y 0.24 deleterious(0) probably_damaging(0.998) TCGA-62-A46P-01 17 48273339 48273339 T A COL1A1 Splice_Site p.X335_splice 0.45 TCGA-62-A46P-01 17 61621679 61621679 C A KCNH6 Missense_Mutation p.P804Q 0.24 tolerated_low_confidence(0.41) benign(0.007) TCGA-62-A46P-01 17 71282616 71282616 C A CDC42EP4 Silent p.V8V 0.18 TCGA-62-A46P-01 17 79031718 79031718 G T BAIAP2 Silent p.L56L 0.27 TCGA-62-A46P-01 17 8809034 8809034 G A PIK3R5 Silent p.Y75Y 0.40 TCGA-62-A46P-01 18 13826337 13826337 C A MC5R Silent p.I191I 0.30 TCGA-62-A46P-01 18 22804503 22804503 T A ZNF521 Missense_Mutation p.I1127F 0.38 tolerated(0.7) benign(0.001) TCGA-62-A46P-01 18 40854027 40854027 G T SYT4 Missense_Mutation p.P123T 0.38 tolerated(0.21) benign(0.046) TCGA-62-A46P-01 18 60242089 60242089 C G ZCCHC2 Silent p.A925A 0.34 TCGA-62-A46P-01 18 61306921 61306921 C T SERPINB4 Missense_Mutation p.E187K 0.39 tolerated(0.14) benign(0.008) TCGA-62-A46P-01 18 77455991 77455991 A G CTDP1 Missense_Mutation p.N138S 0.16 tolerated(0.07) probably_damaging(0.916) TCGA-62-A46P-01 19 10478842 10478842 C A TYK2 Silent p.R118R 0.14 TCGA-62-A46P-01 19 1207120 1207120 G T STK11 Nonsense_Mutation p.E70* 0.58 TCGA-62-A46P-01 19 15512009 15512009 C T AKAP8L Missense_Mutation p.M256I 0.25 tolerated(0.4) benign(0.087) TCGA-62-A46P-01 19 19653687 19653687 G T CILP2 Missense_Mutation p.V295L 0.11 tolerated(0.18) benign(0.094) TCGA-62-A46P-01 19 34263842 34263842 C T CHST8 Silent p.T383T 0.30 TCGA-62-A46P-01 19 36330468 36330468 T G NPHS1 Missense_Mutation p.T953P 0.25 deleterious(0) probably_damaging(0.949) TCGA-62-A46P-01 19 43243222 43243222 C A PSG3 Missense_Mutation p.W28C 0.47 deleterious(0) probably_damaging(0.999) TCGA-62-A46P-01 19 43697467 43697467 G T PSG4 3'UTR 0.20 TCGA-62-A46P-01 19 44891533 44891533 C A ZNF285 Nonsense_Mutation p.E292* 0.34 TCGA-62-A46P-01 19 4504784 4504784 C T PLIN4 Missense_Mutation p.G1254E 0.40 tolerated(0.45) benign(0.135) TCGA-62-A46P-01 19 45895418 45895418 C A PPP1R13L Missense_Mutation p.R512L 0.52 deleterious(0) benign(0.25) TCGA-62-A46P-01 19 47969207 47969207 C G SLC8A2 Missense_Mutation p.G152R 0.32 deleterious(0) probably_damaging(1) TCGA-62-A46P-01 19 48254205 48254205 C T GLTSCR2 Missense_Mutation p.R147W 0.27 deleterious(0) probably_damaging(0.999) TCGA-62-A46P-01 19 52034720 52034720 C A SIGLEC6 Missense_Mutation p.V41L 0.40 deleterious(0) possibly_damaging(0.736) TCGA-62-A46P-01 19 53014043 53014043 G T ZNF578 Missense_Mutation p.G137C 0.29 tolerated(0.1) probably_damaging(1) TCGA-62-A46P-01 19 549790 549790 G T GZMM Nonstop_Mutation p.*258Lext*25 0.27 TCGA-62-A46P-01 19 55019337 55019337 G A LAIR2 Missense_Mutation p.C101Y 0.10 deleterious(0) probably_damaging(1) TCGA-62-A46P-01 19 55396925 55396925 C A FCAR Missense_Mutation p.L117M 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-62-A46P-01 19 58385297 58385297 A T ZNF814 Missense_Mutation p.S487R 0.23 deleterious(0) benign(0.321) TCGA-62-A46P-01 19 9072508 9072508 G T MUC16 Missense_Mutation p.P4980T 0.31 unknown(0) TCGA-62-A46P-01 19 9083591 9083591 C A MUC16 Missense_Mutation p.G2742C 0.36 unknown(0) TCGA-62-A46P-01 19 9084642 9084642 G T MUC16 Silent p.I2391I 0.33 TCGA-62-A46P-01 1 103491393 103491393 C G COL11A1 Intron 0.23 TCGA-62-A46P-01 1 109524373 109524373 T A WDR47 Missense_Mutation p.T802S 0.34 tolerated(0.5) possibly_damaging(0.832) TCGA-62-A46P-01 1 115220125 115220125 G A AMPD1 Missense_Mutation p.A445V 0.10 deleterious(0.05) benign(0.291) TCGA-62-A46P-01 1 12089916 12089916 G T MIIP Missense_Mutation p.Q270H 0.45 deleterious(0.03) possibly_damaging(0.789) TCGA-62-A46P-01 1 13108858 13108858 C A PRAMEF23 RNA 0.53 TCGA-62-A46P-01 1 14068652 14068652 G C PRDM2 Missense_Mutation p.K128N 0.19 probably_damaging(1) TCGA-62-A46P-01 1 150316689 150316689 C T PRPF3 Missense_Mutation p.P493L 0.13 deleterious(0) probably_damaging(1) TCGA-62-A46P-01 1 152193272 152193272 C A HRNR Missense_Mutation p.G278V 0.27 unknown(0) TCGA-62-A46P-01 1 153631218 153631218 T A SNAPIN 5'UTR 0.22 TCGA-62-A46P-01 1 15755205 15755205 G A EFHD2 Silent p.Q236Q 0.27 TCGA-62-A46P-01 1 157665957 157665957 G T FCRL3 Silent p.T335T 0.55 TCGA-62-A46P-01 1 158548862 158548862 C A OR10X1 Missense_Mutation p.L276F 0.12 tolerated(0.06) probably_damaging(0.955) TCGA-62-A46P-01 1 160098612 160098612 T C ATP1A2 Silent p.H396H 0.27 TCGA-62-A46P-01 1 162748459 162748459 G A DDR2 Silent p.Q791Q 0.26 TCGA-62-A46P-01 1 16560261 16560261 T A RSG1 Splice_Site p.X38_splice 0.36 TCGA-62-A46P-01 1 167798556 167798556 C A ADCY10 Silent p.L1233L 0.10 TCGA-62-A46P-01 1 190068209 190068209 C A BRINP3 Missense_Mutation p.G414C 0.24 deleterious(0.02) possibly_damaging(0.892) TCGA-62-A46P-01 1 197150200 197150200 T G ZBTB41 Missense_Mutation p.N532H 0.16 tolerated(0.06) probably_damaging(1) TCGA-62-A46P-01 1 201984388 201984389 - T ELF3 Frame_Shift_Ins p.Y352Lfs*119 0.12 TCGA-62-A46P-01 1 204006526 204006526 G T LINC00303 RNA 0.54 TCGA-62-A46P-01 1 207105832 207105832 C A PIGR Silent p.G659G 0.51 TCGA-62-A46P-01 1 208215591 208215591 T C PLXNA2 Missense_Mutation p.M1380V 0.49 deleterious(0) possibly_damaging(0.685) TCGA-62-A46P-01 1 210273369 210273369 C G SYT14 Missense_Mutation p.Q288E 0.13 tolerated(0.76) benign(0.007) TCGA-62-A46P-01 1 215259791 215259791 G T KCNK2 Missense_Mutation p.V43L 0.53 tolerated_low_confidence(0.09) benign(0.006) TCGA-62-A46P-01 1 228466469 228466469 G T OBSCN Silent p.V2742V 0.15 TCGA-62-A46P-01 1 233393862 233393862 C G PCNXL2 Silent p.L582L 0.18 TCGA-62-A46P-01 1 237870281 237870281 T G RYR2 Missense_Mutation p.C3205G 0.58 benign(0.014) TCGA-62-A46P-01 1 238053382 238053382 G T ZP4 Silent p.T90T 0.28 TCGA-62-A46P-01 1 238090663 238090663 G T RP11-193H5.1 RNA 0.21 TCGA-62-A46P-01 1 25611132 25611132 A T RHD Missense_Mutation p.S73C 0.37 tolerated(0.13) benign(0.02) TCGA-62-A46P-01 1 27429729 27429729 T G SLC9A1 Missense_Mutation p.E520D 0.22 deleterious(0.02) probably_damaging(0.976) TCGA-62-A46P-01 1 57209876 57209876 C G C1orf168 Missense_Mutation p.S484T 0.07 tolerated(0.55) benign(0.217) TCGA-62-A46P-01 1 57611048 57611048 C T DAB1 Missense_Mutation p.R41Q 0.09 deleterious(0) possibly_damaging(0.637) TCGA-62-A46P-01 1 66833711 66833711 G A PDE4B Missense_Mutation p.G542D 0.11 deleterious(0.01) probably_damaging(1) TCGA-62-A46P-01 1 71512735 71512735 C A PTGER3 Missense_Mutation p.A176S 0.07 tolerated(0.56) benign(0.062) TCGA-62-A46P-01 1 74507071 74507071 C A LRRIQ3 Missense_Mutation p.R515L 0.27 deleterious(0.05) possibly_damaging(0.775) TCGA-62-A46P-01 1 75038870 75038870 C A C1orf173 Missense_Mutation p.A842S 0.28 tolerated(0.17) benign(0.173) TCGA-62-A46P-01 1 75039055 75039055 G - C1orf173 Frame_Shift_Del p.A780Gfs*9 0.31 TCGA-62-A46P-01 1 76254869 76254869 G T RABGGTB Missense_Mutation p.R46I 0.35 deleterious(0) probably_damaging(0.988) TCGA-62-A46P-01 1 76349313 76349313 A T MSH4 Silent p.P638P 0.44 TCGA-62-A46P-01 1 82407717 82407718 - T LPHN2 Intron 0.34 TCGA-62-A46P-01 20 126168 126168 C A DEFB126 Missense_Mutation p.D57E 0.65 tolerated(0.27) benign(0.001) TCGA-62-A46P-01 20 37570622 37570622 C T FAM83D Silent p.D198D 0.07 TCGA-62-A46P-01 20 39986084 39986084 A T LPIN3 Missense_Mutation p.Q679L 0.32 deleterious(0) benign(0.01) TCGA-62-A46P-01 20 42165072 42165072 G A L3MBTL1 Missense_Mutation p.R694Q 0.11 tolerated(0.41) benign(0.022) TCGA-62-A46P-01 20 45912381 45912381 G A ZMYND8 Silent p.I272I 0.23 TCGA-62-A46P-01 20 58486870 58486870 C A SYCP2 Nonsense_Mutation p.E303* 0.25 TCGA-62-A46P-01 20 60503472 60503472 C A CDH4 Missense_Mutation p.R666S 0.65 deleterious(0.04) possibly_damaging(0.475) TCGA-62-A46P-01 20 8862524 8862524 C A PLCB1 3'UTR 0.20 TCGA-62-A46P-01 21 10944701 10944701 A T TPTE Missense_Mutation p.F178Y 0.13 tolerated(0.09) possibly_damaging(0.665) TCGA-62-A46P-01 21 32537281 32537281 T A TIAM1 Nonsense_Mutation p.K997* 0.39 TCGA-62-A46P-01 21 33318469 33318469 C T HUNK Silent p.I244I 0.16 TCGA-62-A46P-01 21 34165905 34165905 A C C21orf62 3'UTR 0.32 TCGA-62-A46P-01 22 17447110 17447110 G T GAB4 Missense_Mutation p.L390I 0.40 deleterious(0.02) benign(0.009) TCGA-62-A46P-01 22 18138482 18138482 C T BCL2L13 Missense_Mutation p.A2V 0.26 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-62-A46P-01 22 24034746 24034746 C A RGL4 Intron 0.33 TCGA-62-A46P-01 22 32016569 32016569 G A PISD Silent p.N291N 0.12 TCGA-62-A46P-01 22 32270326 32270326 G A DEPDC5 Missense_Mutation p.V1202I 0.40 tolerated(0.15) possibly_damaging(0.728) TCGA-62-A46P-01 22 37524088 37524088 G A IL2RB 3'UTR 0.25 TCGA-62-A46P-01 22 39355689 39355689 C A APOBEC3A Missense_Mutation p.Q58K 0.38 tolerated(0.29) benign(0.001) TCGA-62-A46P-01 22 44692599 44692599 C A KIAA1644 Silent p.A78A 0.32 TCGA-62-A46P-01 22 45944519 45944519 G T FBLN1 Missense_Mutation p.G490W 0.47 deleterious(0) probably_damaging(0.998) TCGA-62-A46P-01 2 105858892 105858892 C A GPR45 Missense_Mutation p.R193S 0.33 tolerated(0.21) possibly_damaging(0.627) TCGA-62-A46P-01 2 114004356 114004356 C A PAX8 Missense_Mutation p.G56C 0.11 deleterious(0) probably_damaging(1) TCGA-62-A46P-01 2 11725913 11725913 G T GREB1 Silent p.P347P 0.09 TCGA-62-A46P-01 2 11780442 11780442 G C GREB1 Missense_Mutation p.Q1904H 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-62-A46P-01 2 132237755 132237755 G A TUBA3D Silent p.K163K 0.33 TCGA-62-A46P-01 2 141819739 141819739 C A LRP1B Missense_Mutation p.A373S 0.25 benign(0.235) TCGA-62-A46P-01 2 168100550 168100550 C A XIRP2 Missense_Mutation p.P883Q 0.34 probably_damaging(0.982) TCGA-62-A46P-01 2 183699668 183699668 G T FRZB Missense_Mutation p.L296I 0.33 tolerated_low_confidence(0.11) benign(0.001) TCGA-62-A46P-01 2 201342823 201342823 G T SPATS2L 3'UTR 0.33 TCGA-62-A46P-01 2 201533429 201533429 A G AOX1 Missense_Mutation p.D1234G 0.28 tolerated(1) benign(0.012) TCGA-62-A46P-01 2 207040859 207040859 G T GPR1 3'UTR 0.36 TCGA-62-A46P-01 2 207528108 207528108 C A DYTN Missense_Mutation p.Q384H 0.37 deleterious(0) probably_damaging(0.962) TCGA-62-A46P-01 2 211442195 211442195 G T CPS1 Silent p.L150L 0.08 TCGA-62-A46P-01 2 215440498 215440498 C A VWC2L Missense_Mutation p.P208H 0.34 tolerated(0.6) probably_damaging(0.957) TCGA-62-A46P-01 2 219903262 219903262 C A CCDC108 Missense_Mutation p.K64N 0.17 tolerated_low_confidence(0.08) benign(0.017) TCGA-62-A46P-01 2 226446722 226446722 C T NYAP2 Nonsense_Mutation p.R197* 0.05 TCGA-62-A46P-01 2 236653453 236653453 G C AGAP1 Missense_Mutation p.E170Q 0.29 deleterious(0) possibly_damaging(0.506) TCGA-62-A46P-01 2 242793208 242793208 G T PDCD1 3'UTR 0.41 TCGA-62-A46P-01 2 26688581 26688581 G T OTOF Missense_Mutation p.S1586R 0.37 deleterious(0) probably_damaging(0.998) TCGA-62-A46P-01 2 36805751 36805751 T C FEZ2 Missense_Mutation p.M298V 0.29 tolerated(0.21) benign(0.002) TCGA-62-A46P-01 2 74688979 74688979 G A MOGS Missense_Mutation p.A646V 0.35 deleterious(0.01) benign(0.375) TCGA-62-A46P-01 2 74691745 74691745 C T MOGS Missense_Mutation p.G153S 0.27 deleterious(0.01) probably_damaging(0.982) TCGA-62-A46P-01 2 80529570 80529570 G T LRRTM1 Missense_Mutation p.Q459K 0.28 tolerated(0.12) benign(0.04) TCGA-62-A46P-01 3 101390237 101390237 A T ZBTB11 Intron 0.52 TCGA-62-A46P-01 3 112300122 112300122 G T SLC35A5 Missense_Mutation p.R386S 0.52 deleterious(0.03) benign(0.007) TCGA-62-A46P-01 3 112992155 112992155 C A BOC Missense_Mutation p.H401N 0.31 deleterious(0.02) benign(0.21) TCGA-62-A46P-01 3 127788362 127788362 G A SEC61A1 Missense_Mutation p.A430T 0.45 tolerated(0.05) benign(0.213) TCGA-62-A46P-01 3 128584271 128584271 C T RP11-723O4.9 5'Flank 0.38 TCGA-62-A46P-01 3 128998583 128998583 G C HMCES Missense_Mutation p.G3A 0.53 deleterious(0) probably_damaging(1) TCGA-62-A46P-01 3 179481856 179481856 G T USP13 Missense_Mutation p.G720V 0.43 tolerated(0.41) possibly_damaging(0.904) TCGA-62-A46P-01 3 183027507 183027507 G T MCF2L2 Missense_Mutation p.S370R 0.42 deleterious(0.02) benign(0.103) TCGA-62-A46P-01 3 27760275 27760275 G T EOMES Missense_Mutation p.T423N 0.33 deleterious(0.02) benign(0.199) TCGA-62-A46P-01 3 46008077 46008077 C A FYCO1 Missense_Mutation p.V917L 0.22 deleterious(0) benign(0.003) TCGA-62-A46P-01 3 47058706 47058706 A T SETD2 Nonsense_Mutation p.C2524* 0.28 TCGA-62-A46P-01 3 48447186 48447186 C A PLXNB1 Missense_Mutation p.G2083V 0.39 deleterious(0) probably_damaging(0.989) TCGA-62-A46P-01 3 49201676 49201676 C T CCDC71 5'UTR 0.33 TCGA-62-A46P-01 3 52855025 52855025 T A ITIH4 Missense_Mutation p.Q554L 0.29 deleterious(0) possibly_damaging(0.754) TCGA-62-A46P-01 3 69168061 69168061 G T LMOD3 Missense_Mutation p.P482H 0.41 deleterious(0) possibly_damaging(0.75) TCGA-62-A46P-01 3 7620458 7620458 G T GRM7 Missense_Mutation p.R622L 0.31 deleterious(0) probably_damaging(0.998) TCGA-62-A46P-01 3 89391084 89391084 C A EPHA3 Missense_Mutation p.P384T 0.29 deleterious(0) probably_damaging(0.999) TCGA-62-A46P-01 4 113530550 113530550 T A C4orf21 Silent p.P901P 0.30 TCGA-62-A46P-01 4 120548422 120548422 G T PDE5A Intron 0.39 TCGA-62-A46P-01 4 158142170 158142170 T G GRIA2 5'UTR 0.35 TCGA-62-A46P-01 4 16504379 16504379 C A LDB2 Nonsense_Mutation p.E337* 0.36 TCGA-62-A46P-01 4 4304804 4304804 A T ZBTB49 Missense_Mutation p.K414I 0.41 deleterious(0.04) benign(0.236) TCGA-62-A46P-01 4 55946062 55946062 C A KDR 3'UTR 0.50 TCGA-62-A46P-01 4 57173802 57173802 C T KIAA1211 Silent p.F74F 0.20 TCGA-62-A46P-01 4 69536113 69536113 T G UGT2B15 Missense_Mutation p.E75A 0.36 deleterious(0) probably_damaging(0.973) TCGA-62-A46P-01 4 85717736 85717736 T A WDFY3 Missense_Mutation p.R1035S 0.12 tolerated(0.07) benign(0.04) TCGA-62-A46P-01 4 87691037 87691037 G A PTPN13 Silent p.K1540K 0.35 TCGA-62-A46P-01 4 90816179 90816179 G T MMRN1 Silent p.G19G 0.19 TCGA-62-A46P-01 4 96166192 96166192 G T UNC5C Silent p.L293L 0.36 TCGA-62-A46P-01 5 102537299 102537299 G A PPIP5K2 Silent p.T1211T 0.14 TCGA-62-A46P-01 5 135583175 135583175 T G TRPC7 Missense_Mutation p.N610H 0.34 tolerated(0.06) possibly_damaging(0.566) TCGA-62-A46P-01 5 13913875 13913875 C A DNAH5 Nonsense_Mutation p.E505* 0.40 TCGA-62-A46P-01 5 13913876 13913876 C A DNAH5 Silent p.L504L 0.39 TCGA-62-A46P-01 5 140076770 140076770 G T HARS2 Missense_Mutation p.A326S 0.34 deleterious(0) possibly_damaging(0.724) TCGA-62-A46P-01 5 140187570 140187570 C A PCDHA4 Silent p.A266A 0.31 TCGA-62-A46P-01 5 140187572 140187572 C A PCDHA4 Nonsense_Mutation p.S267* 0.31 TCGA-62-A46P-01 5 140574156 140574156 C A PCDHB10 Silent p.A677A 0.38 TCGA-62-A46P-01 5 140720132 140720132 G T PCDHGA2 Missense_Mutation p.V532L 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.804) TCGA-62-A46P-01 5 143586975 143586975 T A KCTD16 Missense_Mutation p.L233Q 0.51 deleterious(0) probably_damaging(0.999) TCGA-62-A46P-01 5 150657191 150657191 G T SLC36A3 Missense_Mutation p.D433E 0.19 tolerated(0.06) benign(0.22) TCGA-62-A46P-01 5 155771502 155771502 C A SGCD Missense_Mutation p.P3T 0.35 tolerated(0.67) benign(0.005) TCGA-62-A46P-01 5 158140139 158140139 C A EBF1 Missense_Mutation p.R403I 0.21 deleterious_low_confidence(0) possibly_damaging(0.645) TCGA-62-A46P-01 5 169141374 169141374 G T DOCK2 Silent p.L618L 0.34 TCGA-62-A46P-01 5 175110631 175110631 C A HRH2 Missense_Mutation p.P132Q 0.34 tolerated(0.17) probably_damaging(0.998) TCGA-62-A46P-01 5 175774792 175774792 G C KIAA1191 Silent p.A243A 0.24 TCGA-62-A46P-01 5 24487830 24487830 G C CDH10 Missense_Mutation p.P770R 0.29 deleterious(0) probably_damaging(0.997) TCGA-62-A46P-01 5 3599693 3599693 G T IRX1 Nonsense_Mutation p.E211* 0.29 TCGA-62-A46P-01 5 37364072 37364073 - ATT NUP155 In_Frame_Ins p.N103dup 0.31 TCGA-62-A46P-01 5 44388708 44388708 A C FGF10 Missense_Mutation p.L26W 0.45 deleterious(0.02) probably_damaging(0.993) TCGA-62-A46P-01 5 71490057 71490057 C T MAP1B Missense_Mutation p.S292F 0.38 unknown(0) TCGA-62-A46P-01 5 71496006 71496006 C A MAP1B Missense_Mutation p.A2275E 0.32 benign(0.343) TCGA-62-A46P-01 5 71496007 71496007 G A MAP1B Silent p.A2275A 0.33 TCGA-62-A46P-01 5 71496008 71496008 G A MAP1B Missense_Mutation p.G2276S 0.29 benign(0.041) TCGA-62-A46P-01 5 79030942 79030942 G A CMYA5 Silent p.E2118E 0.40 TCGA-62-A46P-01 6 10907836 10907836 G A SYCP2L Silent p.R246R 0.29 TCGA-62-A46P-01 6 132891872 132891872 C A TAAR6 Missense_Mutation p.L138M 0.12 deleterious(0) probably_damaging(0.998) TCGA-62-A46P-01 6 138618038 138618038 G T KIAA1244 Silent p.R1198R 0.30 TCGA-62-A46P-01 6 150322146 150322146 T C RAET1K RNA 0.41 TCGA-62-A46P-01 6 155123132 155123144 ATACAACAACAGA - SCAF8 Frame_Shift_Del p.I212Sfs*10 0.09 TCGA-62-A46P-01 6 159653336 159653336 G T FNDC1 Missense_Mutation p.D598Y 0.33 deleterious_low_confidence(0) unknown(0) TCGA-62-A46P-01 6 160679645 160679645 G T SLC22A2 Missense_Mutation p.H49N 0.40 deleterious(0.04) probably_damaging(0.973) TCGA-62-A46P-01 6 161007654 161007654 G C LPA Missense_Mutation p.T1319S 0.35 tolerated(0.24) benign(0.167) TCGA-62-A46P-01 6 29342957 29342957 G C OR12D3 Missense_Mutation p.N36K 0.37 deleterious(0.01) benign(0.382) TCGA-62-A46P-01 6 30627261 30627261 A G DHX16 Silent p.P665P 0.31 TCGA-62-A46P-01 6 32138278 32138278 A C AGPAT1 Missense_Mutation p.I145S 0.27 deleterious(0) possibly_damaging(0.908) TCGA-62-A46P-01 6 32139317 32139317 T A AGPAT1 Intron 0.75 TCGA-62-A46P-01 6 39041447 39041447 A C GLP1R Missense_Mutation p.Y242S 0.30 tolerated(0.74) possibly_damaging(0.887) TCGA-62-A46P-01 6 41884568 41884568 C A MED20 Missense_Mutation p.D42Y 0.36 deleterious(0) probably_damaging(1) TCGA-62-A46P-01 6 42689566 42689566 G A PRPH2 Silent p.N169N 0.25 TCGA-62-A46P-01 6 44221294 44221294 G T HSP90AB1 Nonsense_Mutation p.E712* 0.38 TCGA-62-A46P-01 6 72967921 72967921 C A RIMS1 Missense_Mutation p.S955Y 0.82 deleterious(0) probably_damaging(0.997) TCGA-62-A46P-01 6 99848775 99848775 C A PNISR Nonsense_Mutation p.E687* 0.53 TCGA-62-A46P-01 7 100861498 100861498 G T ZNHIT1 Missense_Mutation p.V8F 0.45 tolerated(0.71) benign(0.022) TCGA-62-A46P-01 7 103214703 103214703 C A RELN Missense_Mutation p.E1449D 0.64 tolerated(0.17) possibly_damaging(0.732) TCGA-62-A46P-01 7 129357122 129357122 G T NRF1 Nonsense_Mutation p.E377* 0.14 TCGA-62-A46P-01 7 134576296 134576296 C G CALD1 Intron 0.38 TCGA-62-A46P-01 7 135378923 135378923 C G SLC13A4 Missense_Mutation p.K360N 0.04 tolerated(0.47) benign(0.035) TCGA-62-A46P-01 7 141708326 141708326 G T MGAM Missense_Mutation p.G50C 0.58 tolerated(0.07) benign(0.001) TCGA-62-A46P-01 7 142168636 142168637 GT - TRBV5-4 Frame_Shift_Del p.H29Pfs*41 0.45 TCGA-62-A46P-01 7 143141010 143141010 C A TAS2R60 Silent p.T155T 0.26 TCGA-62-A46P-01 7 143141421 143141421 C T TAS2R60 Silent p.H292H 0.45 TCGA-62-A46P-01 7 144096161 144096161 C A NOBOX Missense_Mutation p.A451S 0.58 deleterious(0.04) benign(0.421) TCGA-62-A46P-01 7 147914516 147914516 G T CNTNAP2 Missense_Mutation p.E1049D 0.23 deleterious(0.02) benign(0.099) TCGA-62-A46P-01 7 150324729 150324729 G T GIMAP6 3'UTR 0.40 TCGA-62-A46P-01 7 27150288 27150288 C A HOXA3 5'UTR 0.44 TCGA-62-A46P-01 7 37990017 37990017 G A EPDR1 3'UTR 0.19 TCGA-62-A46P-01 7 42079730 42079730 G A GLI3 Missense_Mutation p.T312M 0.36 deleterious(0) probably_damaging(0.97) TCGA-62-A46P-01 7 48237886 48237886 A T ABCA13 Missense_Mutation p.Q72H 0.38 possibly_damaging(0.873) TCGA-62-A46P-01 7 48315297 48315297 G T ABCA13 Missense_Mutation p.D2012Y 0.53 benign(0.156) TCGA-62-A46P-01 7 48559852 48559852 G T ABCA13 Missense_Mutation p.L4671F 0.24 probably_damaging(0.976) TCGA-62-A46P-01 7 53103859 53103859 C A POM121L12 Silent p.A165A 0.08 TCGA-62-A46P-01 7 87145844 87145844 C A ABCB1 Missense_Mutation p.S1022I 0.56 deleterious(0) benign(0.107) TCGA-62-A46P-01 7 97614191 97614192 - G OCM2 3'UTR 0.24 TCGA-62-A46P-01 8 139263184 139263184 G T FAM135B Missense_Mutation p.L148M 0.50 deleterious(0) probably_damaging(1) TCGA-62-A46P-01 8 1574952 1574952 C A DLGAP2 Missense_Mutation p.L417M 0.90 deleterious(0.04) benign(0.209) TCGA-62-A46P-01 8 1626441 1626441 G A DLGAP2 Missense_Mutation p.E704K 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-62-A46P-01 8 2044148 2044148 C A MYOM2 Silent p.L729L 0.21 TCGA-62-A46P-01 8 22165464 22165464 A T PIWIL2 Missense_Mutation p.N522Y 0.14 tolerated(0.52) benign(0.252) TCGA-62-A46P-01 8 24775371 24775371 C A NEFM Missense_Mutation p.P668H 0.24 deleterious(0) possibly_damaging(0.893) TCGA-62-A46P-01 8 27288631 27288631 G T PTK2B Intron 0.43 TCGA-62-A46P-01 8 30032666 30032666 G C DCTN6 Missense_Mutation p.E52Q 0.16 deleterious(0.02) benign(0.433) TCGA-62-A46P-01 8 32621621 32621621 G A NRG1 Missense_Mutation p.A547T 0.11 tolerated(0.29) benign(0.003) TCGA-62-A46P-01 8 35608194 35608194 C A UNC5D Missense_Mutation p.A677E 0.49 deleterious(0) possibly_damaging(0.866) TCGA-62-A46P-01 8 37697666 37697666 C A GPR124 Missense_Mutation p.L847I 0.22 deleterious(0) probably_damaging(0.999) TCGA-62-A46P-01 8 41581056 41581056 G T ANK1 Silent p.T302T 0.52 TCGA-62-A46P-01 8 52384803 52384803 G T PXDNL Nonsense_Mutation p.Y252* 0.56 TCGA-62-A46P-01 8 70981969 70981969 G T PRDM14 Missense_Mutation p.L43M 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-62-A46P-01 8 77616522 77616522 G T ZFHX4 Nonsense_Mutation p.E67* 0.22 TCGA-62-A46P-01 8 8748632 8748632 G A MFHAS1 Missense_Mutation p.A646V 0.08 deleterious(0.03) benign(0.081) TCGA-62-A46P-01 9 111618234 111618234 A G ACTL7B 5'UTR 0.41 TCGA-62-A46P-01 9 126319954 126319954 C A DENND1A Missense_Mutation p.R296S 0.30 deleterious(0) benign(0.184) TCGA-62-A46P-01 9 126319955 126319955 C A DENND1A Missense_Mutation p.R296M 0.30 deleterious(0) possibly_damaging(0.806) TCGA-62-A46P-01 9 131071861 131071861 T C TRUB2 Missense_Mutation p.T322A 0.37 tolerated_low_confidence(1) benign(0.001) TCGA-62-A46P-01 9 17795655 17795655 G T SH3GL2 Nonsense_Mutation p.E325* 0.22 TCGA-62-A46P-01 9 27209126 27209126 C A TEK Silent p.A861A 0.25 TCGA-62-A46P-01 9 35714077 35714077 G A TLN1 Missense_Mutation p.A1041V 0.25 deleterious(0.05) benign(0.005) TCGA-62-A46P-01 9 36846874 36846874 G A PAX5 Silent p.N355N 0.14 TCGA-62-A46P-01 9 97088111 97088111 G A NUTM2F Missense_Mutation p.P41L 0.35 tolerated(0.19) benign(0.062) TCGA-62-A46P-01 X 144906248 144906248 G T SLITRK2 Missense_Mutation p.A769S 0.16 tolerated(0.67) benign(0.003) TCGA-62-A46P-01 X 51487854 51487854 G C GSPT2 Missense_Mutation p.G378R 0.68 deleterious(0) probably_damaging(0.993) TCGA-62-A46P-01 X 77372871 77372871 C T PGK1 Silent p.V160V 0.60 TCGA-62-A46R-01 10 119026322 119026322 G C SLC18A2 Missense_Mutation p.R357T 0.10 deleterious(0) benign(0.219) TCGA-62-A46R-01 10 128923778 128923778 C T DOCK1 Silent p.L867L 0.24 TCGA-62-A46R-01 10 129901397 129901397 T A MKI67 Nonsense_Mutation p.R2903* 0.16 TCGA-62-A46R-01 10 30915036 30915036 G A LYZL2 Missense_Mutation p.S145L 0.09 deleterious(0.03) benign(0.299) TCGA-62-A46R-01 10 49450351 49450351 C T FRMPD2 Missense_Mutation p.M140I 0.05 deleterious(0.01) possibly_damaging(0.883) TCGA-62-A46R-01 11 1027302 1027302 C A MUC6 Missense_Mutation p.A733S 0.15 unknown(0) TCGA-62-A46R-01 11 106810513 106810513 G A GUCY1A2 Silent p.I293I 0.20 TCGA-62-A46R-01 11 120996311 120996311 G T TECTA Missense_Mutation p.G502C 0.37 deleterious(0) probably_damaging(0.993) TCGA-62-A46R-01 11 123465463 123465463 A G GRAMD1B Missense_Mutation p.R121G 0.19 deleterious(0) probably_damaging(0.994) TCGA-62-A46R-01 11 123624882 123624882 G A OR6X1 Silent p.I115I 0.17 TCGA-62-A46R-01 11 18637203 18637203 T G SPTY2D1 Missense_Mutation p.E206D 0.31 tolerated(0.1) benign(0.217) TCGA-62-A46R-01 11 20178124 20178124 A T DBX1 Missense_Mutation p.F262Y 0.19 tolerated_low_confidence(1) benign(0.019) TCGA-62-A46R-01 11 20699568 20699568 C T NELL1 Missense_Mutation p.S49F 0.26 tolerated(0.15) benign(0.002) TCGA-62-A46R-01 11 36595843 36595843 C A RAG1 Missense_Mutation p.S330Y 0.20 deleterious_low_confidence(0) possibly_damaging(0.623) TCGA-62-A46R-01 11 5462537 5462537 G A OR51I1 Missense_Mutation p.L70F 0.19 tolerated(0.33) possibly_damaging(0.642) TCGA-62-A46R-01 11 59244924 59244924 A T OR4D10 Missense_Mutation p.R8W 0.28 tolerated(0.35) benign(0.438) TCGA-62-A46R-01 11 66625659 66625659 G A LRFN4 Silent p.E148E 0.36 TCGA-62-A46R-01 11 73068361 73068361 A G ARHGEF17 Missense_Mutation p.D1359G 0.53 deleterious(0) probably_damaging(0.91) TCGA-62-A46R-01 11 8486361 8486361 A G STK33 Silent p.Y116Y 0.12 TCGA-62-A46R-01 12 11546631 11546631 G T PRB2 Missense_Mutation p.N127K 0.04 deleterious(0.02) unknown(0) TCGA-62-A46R-01 12 121164945 121164945 C - ACADS Frame_Shift_Del p.I56Lfs*16 0.15 TCGA-62-A46R-01 12 121437354 121437354 C T HNF1A Silent p.T564T 0.12 TCGA-62-A46R-01 12 125621346 125621346 C T AACS Missense_Mutation p.A606V 0.09 tolerated(0.57) benign(0.15) TCGA-62-A46R-01 12 21036509 21036509 G A SLCO1B3 Missense_Mutation p.G552D 0.41 deleterious(0.02) possibly_damaging(0.694) TCGA-62-A46R-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.35 deleterious(0.02) possibly_damaging(0.773) TCGA-62-A46R-01 12 33031389 33031389 C T PKP2 Missense_Mutation p.R142K 0.20 deleterious(0.04) possibly_damaging(0.694) TCGA-62-A46R-01 12 56090809 56090809 C T ITGA7 Silent p.R541R 0.38 TCGA-62-A46R-01 12 79842860 79842860 C T SYT1 Nonsense_Mutation p.Q409* 0.38 TCGA-62-A46R-01 12 95611618 95611618 C T VEZT 5'UTR 0.14 TCGA-62-A46R-01 13 53217555 53217555 A T HNRNPA1L2 Missense_Mutation p.S310C 0.24 deleterious(0) unknown(0) TCGA-62-A46R-01 13 58298986 58298986 C - PCDH17 Frame_Shift_Del p.N1014Tfs*6 0.25 TCGA-62-A46R-01 14 105927155 105927155 C A MTA1 Silent p.I269I 0.10 TCGA-62-A46R-01 14 107048676 107048676 G T IGHV3-53 Missense_Mutation p.A115E 0.41 deleterious_low_confidence(0.01) benign(0.157) TCGA-62-A46R-01 14 107170138 107170138 G A IGHV1-69 Silent p.F48F 0.21 TCGA-62-A46R-01 14 107170347 107170347 G T IGHV1-69 Missense_Mutation p.F7L 0.17 tolerated(0.16) benign(0.001) TCGA-62-A46R-01 14 23745007 23745007 C T HOMEZ Missense_Mutation p.R477Q 0.09 tolerated(0.65) benign(0.042) TCGA-62-A46R-01 14 36207798 36207798 G A RALGAPA1 Missense_Mutation p.S503F 0.27 deleterious(0) benign(0.311) TCGA-62-A46R-01 14 38724658 38724658 C G CLEC14A Missense_Mutation p.L190F 0.05 tolerated(0.06) probably_damaging(0.991) TCGA-62-A46R-01 14 74413187 74413187 G T FAM161B Missense_Mutation p.S122Y 0.17 deleterious(0.03) benign(0.109) TCGA-62-A46R-01 14 90429666 90429666 T A TDP1 Missense_Mutation p.S70T 0.05 tolerated_low_confidence(0.11) benign(0.044) TCGA-62-A46R-01 14 92960036 92960036 C G SLC24A4 3'UTR 0.28 TCGA-62-A46R-01 14 94756217 94756217 G C SERPINA10 Missense_Mutation p.F238L 0.34 tolerated(0.18) benign(0.334) TCGA-62-A46R-01 14 96769469 96769469 T C ATG2B Missense_Mutation p.T1656A 0.15 tolerated(0.15) possibly_damaging(0.878) TCGA-62-A46R-01 15 28479328 28479328 C - HERC2 Frame_Shift_Del p.G1369Afs*37 0.09 TCGA-62-A46R-01 15 34078181 34078181 C T RYR3 Missense_Mutation p.A3196V 0.21 probably_damaging(0.991) TCGA-62-A46R-01 15 62146658 62146658 A C VPS13C Nonstop_Mutation p.*3754Eext*19 0.14 TCGA-62-A46R-01 15 79760631 79760631 C G KIAA1024 Missense_Mutation p.R886G 0.21 deleterious(0.01) probably_damaging(1) TCGA-62-A46R-01 15 89386810 89386810 G A ACAN Missense_Mutation p.V328I 0.21 deleterious(0) unknown(0) TCGA-62-A46R-01 16 27549659 27549659 G A GTF3C1 Silent p.I150I 0.10 TCGA-62-A46R-01 16 70841627 70841627 G C HYDIN Missense_Mutation p.I5074M 0.08 possibly_damaging(0.844) TCGA-62-A46R-01 16 848017 848017 A T CHTF18 3'UTR 0.38 TCGA-62-A46R-01 17 10358986 10358986 G A MYH4 Missense_Mutation p.R707C 0.11 deleterious(0) probably_damaging(0.937) TCGA-62-A46R-01 17 26960635 26960635 G T KIAA0100 Missense_Mutation p.R1133S 0.18 deleterious(0) probably_damaging(1) TCGA-62-A46R-01 17 36002305 36002305 C T DDX52 Silent p.S40S 0.12 TCGA-62-A46R-01 17 39274341 39274341 C T KRTAP4-11 Missense_Mutation p.R76H 0.15 tolerated(0.06) unknown(0) TCGA-62-A46R-01 17 43481398 43481398 A T ARHGAP27 Missense_Mutation p.L174H 0.15 deleterious(0) probably_damaging(0.993) TCGA-62-A46R-01 17 46196133 46196133 C T SNX11 Nonsense_Mutation p.R100* 0.18 TCGA-62-A46R-01 17 61660979 61660980 TT - DCAF7 Intron 0.25 TCGA-62-A46R-01 17 67031860 67031860 C T ABCA9 Missense_Mutation p.V295I 0.08 tolerated(0.86) benign(0.042) TCGA-62-A46R-01 17 7578257 7578257 C A TP53 Nonsense_Mutation p.E198* 0.30 TCGA-62-A46R-01 18 22804706 22804706 T A ZNF521 Missense_Mutation p.Q1059L 0.21 deleterious_low_confidence(0.04) benign(0) TCGA-62-A46R-01 18 67508510 67508510 G A DOK6 Missense_Mutation p.R296H 0.20 deleterious_low_confidence(0.03) benign(0.043) TCGA-62-A46R-01 19 17452514 17452514 G T GTPBP3 3'UTR 0.32 TCGA-62-A46R-01 19 36004049 36004049 C T DMKN Missense_Mutation p.G110E 0.08 deleterious(0) probably_damaging(0.999) TCGA-62-A46R-01 19 38901812 38901812 C T RASGRP4 Missense_Mutation p.D599N 0.22 tolerated(0.43) benign(0.409) TCGA-62-A46R-01 19 39052023 39052023 G A RYR1 Missense_Mutation p.A4185T 0.05 benign(0) TCGA-62-A46R-01 19 52618660 52618660 T C ZNF616 Missense_Mutation p.Y586C 0.30 deleterious(0.01) probably_damaging(0.91) TCGA-62-A46R-01 1 114308935 114308935 C A RSBN1 Silent p.V692V 0.14 TCGA-62-A46R-01 1 150233898 150233898 G A CA14 Silent p.E39E 0.12 TCGA-62-A46R-01 1 152192733 152192733 C A HRNR Missense_Mutation p.G458C 0.03 unknown(0) TCGA-62-A46R-01 1 152280686 152280686 C T FLG Missense_Mutation p.G2226S 0.34 probably_damaging(0.959) TCGA-62-A46R-01 1 152282447 152282447 C T FLG Missense_Mutation p.D1639N 0.08 possibly_damaging(0.539) TCGA-62-A46R-01 1 152283412 152283412 G T FLG Missense_Mutation p.A1317D 0.11 possibly_damaging(0.665) TCGA-62-A46R-01 1 152382348 152382348 C A CRNN Missense_Mutation p.A404S 0.33 tolerated(0.19) benign(0.066) TCGA-62-A46R-01 1 152759953 152759953 T A LCE1E Missense_Mutation p.C60S 0.38 tolerated_low_confidence(0.62) unknown(0) TCGA-62-A46R-01 1 153636927 153636927 C T ILF2 Missense_Mutation p.A201T 0.10 tolerated(0.7) possibly_damaging(0.616) TCGA-62-A46R-01 1 156213983 156213983 G - PAQR6 Frame_Shift_Del p.P242Qfs*26 0.09 TCGA-62-A46R-01 1 158226574 158226574 A T CD1A Splice_Site p.X202_splice 0.18 TCGA-62-A46R-01 1 158548909 158548909 G T OR10X1 Missense_Mutation p.L261I 0.33 deleterious(0.03) benign(0.232) TCGA-62-A46R-01 1 159038400 159038400 G A AIM2 Silent p.V118V 0.11 TCGA-62-A46R-01 1 161693218 161693218 G T FCRLB Missense_Mutation p.E38D 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-62-A46R-01 1 161953954 161953954 G A OLFML2B Silent p.Y588Y 0.18 TCGA-62-A46R-01 1 169677770 169677770 T C SELL Missense_Mutation p.Y100C 0.33 deleterious(0) probably_damaging(1) TCGA-62-A46R-01 1 175067491 175067491 G T TNN Missense_Mutation p.V627L 0.20 tolerated(0.19) benign(0.07) TCGA-62-A46R-01 1 176759078 176759078 C T PAPPA2 Nonsense_Mutation p.Q1617* 0.04 TCGA-62-A46R-01 1 186114580 186114580 G T HMCN1 Missense_Mutation p.R4771L 0.30 probably_damaging(0.988) TCGA-62-A46R-01 1 206905049 206905049 T C MAPKAPK2 Silent p.F319F 0.27 TCGA-62-A46R-01 1 209791930 209791930 C A LAMB3 Missense_Mutation p.A926S 0.16 tolerated(0.13) benign(0.391) TCGA-62-A46R-01 1 21585237 21585237 G A ECE1 Silent p.F237F 0.18 TCGA-62-A46R-01 1 216062281 216062281 T C USH2A Silent p.L2570L 0.40 TCGA-62-A46R-01 1 217793428 217793428 G C GPATCH2 Missense_Mutation p.T157S 0.23 tolerated(0.58) benign(0.004) TCGA-62-A46R-01 1 237620035 237620035 G C RYR2 Missense_Mutation p.A538P 0.25 possibly_damaging(0.877) TCGA-62-A46R-01 1 237947751 237947751 G T RYR2 Missense_Mutation p.A4247S 0.25 benign(0.005) TCGA-62-A46R-01 1 241799092 241799092 G A CHML 5'UTR 0.34 TCGA-62-A46R-01 1 243542085 243542085 G A SDCCAG8 Silent p.Q512Q 0.07 TCGA-62-A46R-01 1 27624465 27624465 G A WDTC1 Silent p.V364V 0.20 TCGA-62-A46R-01 1 3677911 3677911 G A CCDC27 Missense_Mutation p.E260K 0.15 tolerated(0.3) possibly_damaging(0.801) TCGA-62-A46R-01 1 57170052 57170052 A T PRKAA2 Missense_Mutation p.K399N 0.47 deleterious(0) possibly_damaging(0.597) TCGA-62-A46R-01 20 37357055 37357055 C A SLC32A1 Missense_Mutation p.P451T 0.27 deleterious(0) probably_damaging(1) TCGA-62-A46R-01 20 40730835 40730835 C A PTPRT Missense_Mutation p.D1215Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-62-A46R-01 20 42574567 42574567 C A TOX2 Intron 0.23 TCGA-62-A46R-01 20 62071009 62071009 C A KCNQ2 Missense_Mutation p.G290V 0.20 deleterious(0) probably_damaging(0.998) TCGA-62-A46R-01 21 19168902 19168902 C A C21orf91 Nonsense_Mutation p.E221* 0.21 TCGA-62-A46R-01 21 28304321 28304321 A T ADAMTS5 Splice_Site p.X683_splice 0.43 TCGA-62-A46R-01 21 43645931 43645931 C T ABCG1 Missense_Mutation p.R65C 0.18 tolerated(0.06) benign(0.037) TCGA-62-A46R-01 21 45826563 45826563 C G TRPM2 Missense_Mutation p.N959K 0.25 deleterious(0) probably_damaging(0.95) TCGA-62-A46R-01 22 17119629 17119629 G T TPTEP1 Intron 0.20 TCGA-62-A46R-01 22 18561350 18561350 G A PEX26 Missense_Mutation p.V70M 0.45 tolerated(0.12) benign(0.076) TCGA-62-A46R-01 22 22869182 22869182 A G ZNF280A Missense_Mutation p.L258P 0.36 tolerated(0.19) benign(0.104) TCGA-62-A46R-01 22 30639793 30639793 C - LIF Frame_Shift_Del p.C153Afs*14 0.16 TCGA-62-A46R-01 22 44893105 44893105 C A LDOC1L Missense_Mutation p.R111L 0.14 tolerated(0.63) benign(0) TCGA-62-A46R-01 2 127453521 127453521 G T GYPC Splice_Site p.X64_splice 0.24 TCGA-62-A46R-01 2 15319131 15319131 T C NBAS Missense_Mutation p.Q2274R 0.30 tolerated(0.46) benign(0.002) TCGA-62-A46R-01 2 154996949 154996949 A T GALNT13 Missense_Mutation p.N81I 0.20 deleterious(0) possibly_damaging(0.823) TCGA-62-A46R-01 2 167262851 167262851 C G SCN7A Missense_Mutation p.V1430L 0.35 deleterious(0) probably_damaging(0.936) TCGA-62-A46R-01 2 171399460 171399460 C T MYO3B Missense_Mutation p.A1207V 0.28 tolerated_low_confidence(0.39) benign(0.001) TCGA-62-A46R-01 2 179325123 179325123 C T DFNB59 Missense_Mutation p.T239M 0.12 tolerated(0.1) benign(0.354) TCGA-62-A46R-01 2 179439793 179439793 G A TTN Missense_Mutation p.T23689I 0.22 TCGA-62-A46R-01 2 198265540 198265540 C G SF3B1 Missense_Mutation p.E873Q 0.15 tolerated(0.21) benign(0.04) TCGA-62-A46R-01 2 208795816 208795816 C A PLEKHM3 Nonsense_Mutation p.E574* 0.22 TCGA-62-A46R-01 2 21234663 21234663 G T APOB Missense_Mutation p.H1693N 0.12 benign(0.141) TCGA-62-A46R-01 2 220354242 220354242 G T SPEG Silent p.S2834S 0.31 TCGA-62-A46R-01 2 220504370 220504370 C T SLC4A3 Missense_Mutation p.R1091C 0.18 deleterious(0.01) possibly_damaging(0.899) TCGA-62-A46R-01 2 233409177 233409177 C A CHRNG Nonsense_Mutation p.S379* 0.25 TCGA-62-A46R-01 2 234669197 234669197 G T UGT1A8 Intron 0.17 TCGA-62-A46R-01 2 24484500 24484500 T C ITSN2 Missense_Mutation p.K823E 0.20 tolerated(0.76) unknown(0) TCGA-62-A46R-01 2 68765023 68765023 C T APLF Missense_Mutation p.S275F 0.13 deleterious(0.01) benign(0.132) TCGA-62-A46R-01 2 89309693 89309693 C G IGKV1-9 Missense_Mutation p.R46P 0.13 deleterious_low_confidence(0) probably_damaging(0.92) TCGA-62-A46R-01 3 121411177 121411177 C A GOLGB1 Missense_Mutation p.G2345V 0.20 benign(0.06) TCGA-62-A46R-01 3 126751305 126751305 G T PLXNA1 Silent p.T1769T 0.21 TCGA-62-A46R-01 3 14863095 14863095 C G FGD5 Missense_Mutation p.D839E 0.41 tolerated(1) benign(0.003) TCGA-62-A46R-01 3 165547504 165547505 - T BCHE Frame_Shift_Ins p.W440Mfs*4 0.23 TCGA-62-A46R-01 3 170624864 170624864 C G EIF5A2 Missense_Mutation p.D62H 0.12 deleterious(0) probably_damaging(0.997) TCGA-62-A46R-01 3 63981969 63981969 A T ATXN7 Missense_Mutation p.H824L 0.09 deleterious(0.02) benign(0.059) TCGA-62-A46R-01 3 89498519 89498519 C G EPHA3 Missense_Mutation p.Q831E 0.36 deleterious(0) benign(0.167) TCGA-62-A46R-01 4 123268929 123268929 G A KIAA1109 Missense_Mutation p.R4375Q 0.09 benign(0.001) TCGA-62-A46R-01 4 140265375 140265375 A G NAA15 Silent p.E191E 0.38 TCGA-62-A46R-01 4 146461025 146461026 - T SMAD1 Frame_Shift_Ins p.N158* 0.30 TCGA-62-A46R-01 4 68459006 68459006 T C STAP1 Missense_Mutation p.I253T 0.28 deleterious(0) possibly_damaging(0.608) TCGA-62-A46R-01 5 102508922 102508922 A C PPIP5K2 Silent p.R784R 0.10 TCGA-62-A46R-01 5 121487999 121487999 G T ZNF474 Missense_Mutation p.G105V 0.15 deleterious(0) probably_damaging(1) TCGA-62-A46R-01 5 140307420 140307420 G A PCDHAC1 Missense_Mutation p.E315K 0.21 tolerated(1) benign(0.008) TCGA-62-A46R-01 5 140482310 140482310 G T PCDHB3 Missense_Mutation p.A693S 0.05 tolerated_low_confidence(0.1) benign(0.428) TCGA-62-A46R-01 5 140802551 140802551 G A PCDHGA11 Missense_Mutation p.G586D 0.06 deleterious_low_confidence(0.02) probably_damaging(0.976) TCGA-62-A46R-01 5 145849210 145849210 A G TCERG1 Silent p.E434E 0.18 TCGA-62-A46R-01 5 151051184 151051184 C T SPARC Missense_Mutation p.V94M 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-62-A46R-01 5 160033878 160033878 C T ATP10B Silent p.L1018L 0.18 TCGA-62-A46R-01 5 32780880 32780880 C A NPR3 Missense_Mutation p.F416L 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-62-A46R-01 5 37392197 37392197 A G WDR70 Missense_Mutation p.R91G 0.08 tolerated(0.46) benign(0.001) TCGA-62-A46R-01 5 37392209 37392209 A G WDR70 Missense_Mutation p.K95E 0.08 tolerated(1) benign(0.001) TCGA-62-A46R-01 5 56542959 56542959 G T GPBP1 Nonsense_Mutation p.E248* 0.30 TCGA-62-A46R-01 5 70856056 70856056 A G BDP1 Silent p.S2496S 0.19 TCGA-62-A46R-01 6 133048145 133048145 G T VNN3 Intron 0.38 TCGA-62-A46R-01 6 13799070 13799070 C T MCUR1 Missense_Mutation p.E284K 0.60 deleterious(0) probably_damaging(0.998) TCGA-62-A46R-01 6 33990543 33990543 C T GRM4 3'UTR 0.14 TCGA-62-A46R-01 6 34003675 34003675 G T GRM4 Missense_Mutation p.R738S 0.30 tolerated(0.25) benign(0.055) TCGA-62-A46R-01 6 35260463 35260463 G T ZNF76 Missense_Mutation p.R355L 0.32 deleterious(0) possibly_damaging(0.885) TCGA-62-A46R-01 6 36368312 36368312 A G PXT1 Silent p.H73H 0.45 TCGA-62-A46R-01 6 66205123 66205123 C T EYS Missense_Mutation p.G61S 0.34 tolerated_low_confidence(0.21) benign(0.271) TCGA-62-A46R-01 6 86239966 86239966 A G SNX14 Missense_Mutation p.V613A 0.38 deleterious(0.01) probably_damaging(0.968) TCGA-62-A46R-01 7 100386861 100386861 G A ZAN Missense_Mutation p.V2416I 0.17 unknown(0) TCGA-62-A46R-01 7 104717615 104717615 A G KMT2E Missense_Mutation p.N325S 0.38 tolerated(0.06) benign(0.292) TCGA-62-A46R-01 7 113518313 113518313 G T PPP1R3A Missense_Mutation p.P945H 0.31 tolerated(0.09) benign(0.423) TCGA-62-A46R-01 7 12728429 12728429 G A ARL4A Missense_Mutation p.D184N 0.15 tolerated(0.19) benign(0.258) TCGA-62-A46R-01 7 128630045 128630045 C A TNPO3 Nonsense_Mutation p.E490* 0.16 TCGA-62-A46R-01 7 128630055 128630055 T A TNPO3 Silent p.G486G 0.15 TCGA-62-A46R-01 7 134346378 134346378 A T BPGM Missense_Mutation p.N40I 0.29 tolerated(0.1) benign(0.105) TCGA-62-A46R-01 7 142111599 142111599 G T TRBV5-7 Missense_Mutation p.S46Y 0.33 deleterious(0) probably_damaging(0.99) TCGA-62-A46R-01 7 142176779 142176779 C A TRBV7-4 Missense_Mutation p.R4S 0.42 tolerated(0.18) benign(0.051) TCGA-62-A46R-01 7 143053924 143053925 - T FAM131B Frame_Shift_Ins p.P268Tfs*19 0.21 TCGA-62-A46R-01 7 149514997 149514997 C A SSPO RNA 0.17 TCGA-62-A46R-01 7 150218014 150218014 G A GIMAP7 3'UTR 0.23 TCGA-62-A46R-01 7 151478345 151478345 C G PRKAG2 Missense_Mutation p.R120P 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-62-A46R-01 7 1539142 1539142 C G INTS1 Missense_Mutation p.E271Q 0.21 tolerated(0.07) benign(0.221) TCGA-62-A46R-01 7 43484530 43484530 G T HECW1 Nonsense_Mutation p.E587* 0.31 TCGA-62-A46R-01 7 43917546 43917546 G A URGCP Nonsense_Mutation p.Q506* 0.35 TCGA-62-A46R-01 7 88847516 88847516 G T ZNF804B Missense_Mutation p.K52N 0.11 deleterious(0) probably_damaging(0.997) TCGA-62-A46R-01 8 110984758 110984758 C A KCNV1 Missense_Mutation p.Q240H 0.23 tolerated(0.14) benign(0) TCGA-62-A46R-01 8 23429144 23429144 C A SLC25A37 Missense_Mutation p.Q265K 0.16 deleterious(0.01) probably_damaging(0.938) TCGA-62-A46R-01 8 2820134 2820134 G T CSMD1 Missense_Mutation p.P3161H 0.17 probably_damaging(1) TCGA-62-A46R-01 8 3081337 3081337 G T CSMD1 Missense_Mutation p.N1466K 0.24 possibly_damaging(0.734) TCGA-62-A46R-01 8 49832545 49832545 G A SNAI2 Missense_Mutation p.R179W 0.10 deleterious(0) probably_damaging(1) TCGA-62-A46R-01 8 52252240 52252240 C T PXDNL Missense_Mutation p.D1364N 0.12 tolerated(0.06) benign(0.045) TCGA-62-A46R-01 8 95893865 95893865 G A CCNE2 Missense_Mutation p.H404Y 0.22 deleterious_low_confidence(0.01) benign(0.064) TCGA-62-A46R-01 9 107367176 107367176 G T OR13C2 Missense_Mutation p.L245M 0.26 deleterious(0) probably_damaging(0.969) TCGA-62-A46R-01 9 136249642 136249642 G A C9orf96 Silent p.V59V 0.37 TCGA-62-A46R-01 9 139397720 139397720 T C NOTCH1 Missense_Mutation p.Q1694R 0.29 tolerated(0.18) possibly_damaging(0.811) TCGA-62-A46R-01 9 35074079 35074079 A T FANCG 3'UTR 0.11 TCGA-62-A46R-01 9 72435815 72435815 C T C9orf135 Missense_Mutation p.S7F 0.19 tolerated_low_confidence(0.1) benign(0.002) TCGA-62-A46R-01 9 8436684 8436684 C G PTPRD Missense_Mutation p.A1332P 0.32 tolerated(0.35) probably_damaging(0.997) TCGA-62-A46R-01 X 104464707 104464707 C T TEX13A Silent p.A125A 0.28 TCGA-62-A46R-01 X 110495656 110495656 A T CAPN6 Nonsense_Mutation p.L193* 0.29 TCGA-62-A46R-01 X 11157246 11157246 C T ARHGAP6 Missense_Mutation p.G888R 0.46 tolerated_low_confidence(0.51) benign(0.312) TCGA-62-A46R-01 X 119007322 119007322 G A NDUFA1 Missense_Mutation p.R53H 0.07 tolerated(0.18) benign(0.002) TCGA-62-A46R-01 X 119746108 119746108 A C MCTS1 Missense_Mutation p.T180P 0.17 tolerated(0.53) benign(0.003) TCGA-62-A46R-01 X 12924789 12924789 T C TLR8 5'UTR 0.23 TCGA-62-A46R-01 X 129765463 129765466 CAGA AGG ENOX2 Frame_Shift_Del p.S531Pfs*7 0.17 TCGA-62-A46R-01 X 134303518 134303518 C G CT55 Missense_Mutation p.K93N 0.12 deleterious(0.04) benign(0.039) TCGA-62-A46R-01 X 140995296 140995296 G T MAGEC1 Missense_Mutation p.E702D 0.12 tolerated_low_confidence(0.05) benign(0.217) TCGA-62-A46R-01 X 150828286 150828286 G A PASD1 Silent p.L273L 0.19 TCGA-62-A46R-01 X 151358391 151358391 C A GABRA3 Missense_Mutation p.M318I 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-62-A46R-01 X 153215763 153215763 T C HCFC1 Missense_Mutation p.I1979V 0.18 tolerated(0.13) possibly_damaging(0.483) TCGA-62-A46R-01 X 153589730 153589730 G C FLNA Silent p.P1051P 0.28 TCGA-62-A46R-01 X 153589731 153589731 G T FLNA Missense_Mutation p.P1051H 0.27 tolerated(0.06) probably_damaging(0.997) TCGA-62-A46R-01 X 15613018 15613018 C A ACE2 Missense_Mutation p.A99S 0.22 tolerated(0.83) benign(0.003) TCGA-62-A46R-01 X 21874983 21874983 G A YY2 Silent p.A127A 0.09 TCGA-62-A46R-01 X 21875276 21875276 C A YY2 Missense_Mutation p.P225Q 0.22 deleterious(0) probably_damaging(0.993) TCGA-62-A46R-01 X 27998161 27998161 A T DCAF8L1 Missense_Mutation p.Y431N 0.33 deleterious(0) probably_damaging(0.983) TCGA-62-A46R-01 X 30260934 30260934 G T MAGEB4 Missense_Mutation p.G228W 0.15 deleterious(0) probably_damaging(1) TCGA-62-A46R-01 X 3239348 3239348 G T MXRA5 Missense_Mutation p.L1460I 0.33 tolerated(0.4) benign(0.001) TCGA-62-A46R-01 X 3241885 3241885 G T MXRA5 Missense_Mutation p.P614Q 0.13 deleterious(0) probably_damaging(1) TCGA-62-A46R-01 X 3573368 3573368 G T PRKX Silent p.R141R 0.17 TCGA-62-A46R-01 X 37028667 37028667 G A FAM47C Silent p.P728P 0.33 TCGA-62-A46R-01 X 49083420 49083420 C T CACNA1F Missense_Mutation p.E430K 0.15 tolerated(0.23) benign(0.002) TCGA-62-A46R-01 X 49113260 49113260 A - FOXP3 Frame_Shift_Del p.C199Afs*55 0.08 TCGA-62-A46R-01 X 54319700 54319700 G T WNK3 Missense_Mutation p.P585H 0.21 tolerated(0.32) benign(0.006) TCGA-62-A46R-01 X 55033449 55033449 C T APEX2 Nonsense_Mutation p.Q380* 0.15 TCGA-62-A46R-01 X 64749665 64749665 C A LAS1L Missense_Mutation p.R203M 0.14 deleterious(0.02) benign(0.326) TCGA-62-A46R-01 X 70470312 70470312 G T ZMYM3 Nonsense_Mutation p.S348* 0.25 TCGA-62-A46R-01 X 73049017 73049017 G A XIST RNA 0.31 TCGA-62-A46S-01 10 102746902 102746902 G A MRPL43 Silent p.V61V 0.19 TCGA-62-A46S-01 10 104120846 104120846 G A GBF1 Missense_Mutation p.S486N 0.25 deleterious(0.01) benign(0.35) TCGA-62-A46S-01 10 106959818 106959818 A G SORCS3 Missense_Mutation p.I691V 0.25 tolerated(0.12) benign(0.027) TCGA-62-A46S-01 10 111879111 111879111 A G ADD3 Missense_Mutation p.K287R 0.23 deleterious(0.01) benign(0.443) TCGA-62-A46S-01 10 115609591 115609591 C T DCLRE1A Missense_Mutation p.A425T 0.33 tolerated(0.46) benign(0.002) TCGA-62-A46S-01 11 118343171 118343171 G T KMT2A Missense_Mutation p.D433Y 0.14 probably_damaging(0.996) TCGA-62-A46S-01 11 119056968 119056968 C T PDZD3 Intron 0.48 TCGA-62-A46S-01 11 119183608 119183608 A G MCAM Missense_Mutation p.L204S 0.47 deleterious(0) possibly_damaging(0.906) TCGA-62-A46S-01 11 119548271 119548271 C G PVRL1 Missense_Mutation p.V243L 0.42 deleterious(0.01) possibly_damaging(0.642) TCGA-62-A46S-01 11 120745933 120745933 C G GRIK4 Missense_Mutation p.T382R 0.39 tolerated(0.22) benign(0.021) TCGA-62-A46S-01 11 34938196 34938196 C T PDHX 5'UTR 0.17 TCGA-62-A46S-01 11 55587400 55587400 G A OR5D18 Missense_Mutation p.V99I 0.22 tolerated(1) benign(0.001) TCGA-62-A46S-01 11 55606803 55606803 T C OR5D16 Silent p.P192P 0.35 TCGA-62-A46S-01 11 57798590 57798590 C T OR6Q1 Nonsense_Mutation p.R56* 0.21 TCGA-62-A46S-01 11 58034394 58034394 G T OR10W1 3'UTR 0.21 TCGA-62-A46S-01 11 62394784 62394784 T A GANAB Missense_Mutation p.N763I 0.12 deleterious(0.01) benign(0.053) TCGA-62-A46S-01 11 65004191 65004191 G A SLC22A20 RNA 0.21 TCGA-62-A46S-01 11 71717156 71717156 A C NUMA1 Missense_Mutation p.L1873V 0.18 probably_damaging(0.999) TCGA-62-A46S-01 11 71717190 71717190 A C NUMA1 Silent p.G1861G 0.17 TCGA-62-A46S-01 11 73804904 73804904 C A C2CD3 Missense_Mutation p.G1101C 0.40 deleterious(0) probably_damaging(0.979) TCGA-62-A46S-01 11 74556213 74556213 C G XRRA1 Missense_Mutation p.R603P 0.38 tolerated(0.08) benign(0.003) TCGA-62-A46S-01 11 82550437 82550437 C A PRCP Missense_Mutation p.V339L 0.35 tolerated(0.8) benign(0.006) TCGA-62-A46S-01 12 123424663 123424663 G A ABCB9 Missense_Mutation p.R580C 0.55 deleterious(0.03) possibly_damaging(0.766) TCGA-62-A46S-01 12 132496110 132496110 A G EP400 Silent p.K1124K 0.18 TCGA-62-A46S-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.19 deleterious(0.04) possibly_damaging(0.506) TCGA-62-A46S-01 12 32975399 32975399 A T PKP2 Splice_Site p.X657_splice 0.28 TCGA-62-A46S-01 12 53839949 53839949 C G PRR13 3'UTR 0.48 TCGA-62-A46S-01 12 78571094 78571094 G A NAV3 Splice_Site p.X1766_splice 0.07 TCGA-62-A46S-01 13 101910825 101910825 C A NALCN Missense_Mutation p.R412M 0.17 tolerated(0.08) benign(0.139) TCGA-62-A46S-01 13 29599234 29599234 G T MTUS2 Silent p.S143S 0.25 TCGA-62-A46S-01 13 32893277 32893277 C G BRCA2 Missense_Mutation p.S44C 0.07 deleterious(0.04) benign(0.022) TCGA-62-A46S-01 13 32913247 32913247 C T BRCA2 Silent p.I1585I 0.15 TCGA-62-A46S-01 13 32913546 32913546 C T BRCA2 Missense_Mutation p.S1685L 0.25 tolerated(0.17) benign(0.101) TCGA-62-A46S-01 13 51854787 51854787 C T FAM124A Nonsense_Mutation p.R382* 0.10 TCGA-62-A46S-01 13 77655608 77655608 T C MYCBP2 Missense_Mutation p.N3753S 0.21 probably_damaging(0.968) TCGA-62-A46S-01 13 88327756 88327756 C A SLITRK5 Missense_Mutation p.A38E 0.31 tolerated(0.42) benign(0.191) TCGA-62-A46S-01 14 102483164 102483164 C T DYNC1H1 Missense_Mutation p.T2559M 0.11 probably_damaging(0.996) TCGA-62-A46S-01 14 102901026 102901026 G A TECPR2 Silent p.A624A 0.10 TCGA-62-A46S-01 14 105349507 105349507 A T CEP170B Missense_Mutation p.Q238L 0.25 deleterious(0.02) benign(0.001) TCGA-62-A46S-01 14 20344655 20344655 G A OR4K2 Missense_Mutation p.A77T 0.36 tolerated(0.56) benign(0.165) TCGA-62-A46S-01 14 24532648 24532648 C T LRRC16B Missense_Mutation p.S962F 0.43 deleterious(0.02) possibly_damaging(0.554) TCGA-62-A46S-01 14 42356450 42356450 C A LRFN5 Missense_Mutation p.Q208K 0.47 tolerated(0.45) benign(0.07) TCGA-62-A46S-01 14 51467451 51467451 C T TRIM9 Missense_Mutation p.A472T 0.14 tolerated(0.06) benign(0.005) TCGA-62-A46S-01 15 40588533 40588533 G T PLCB2 Missense_Mutation p.Q554K 0.21 deleterious(0) probably_damaging(0.936) TCGA-62-A46S-01 15 41313190 41313190 C A INO80 Missense_Mutation p.W1061L 0.08 tolerated(0.24) benign(0.012) TCGA-62-A46S-01 15 43622121 43622121 C G LCMT2 Silent p.A189A 0.23 TCGA-62-A46S-01 15 45003743 45003743 A T B2M 5'UTR 0.22 TCGA-62-A46S-01 16 30736202 30736202 G A SRCAP Silent p.Q1819Q 0.14 TCGA-62-A46S-01 16 3077211 3077211 G A THOC6 Missense_Mutation p.R247Q 0.54 deleterious(0.02) possibly_damaging(0.556) TCGA-62-A46S-01 16 32077649 32077649 C A IGHV3OR16-9 Silent p.A88A 0.13 TCGA-62-A46S-01 16 56899385 56899385 C T SLC12A3 Missense_Mutation p.R80W 0.07 deleterious(0) probably_damaging(0.914) TCGA-62-A46S-01 16 65038602 65038602 C A CDH11 Missense_Mutation p.W57C 0.31 deleterious(0) possibly_damaging(0.721) TCGA-62-A46S-01 17 29550461 29550461 G C NF1 Splice_Site p.X574_splice 0.20 TCGA-62-A46S-01 17 3143996 3143996 C A OR1D4 RNA 0.41 TCGA-62-A46S-01 17 33768315 33768315 T A SLFN13 Missense_Mutation p.I665F 0.33 deleterious(0) probably_damaging(0.995) TCGA-62-A46S-01 17 42501731 42501731 G A GPATCH8 Missense_Mutation p.H160Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-62-A46S-01 17 49350801 49350801 G A UTP18 Missense_Mutation p.G234E 0.08 deleterious(0) probably_damaging(0.979) TCGA-62-A46S-01 17 60601668 60601668 A G TLK2 Silent p.Q113Q 0.23 TCGA-62-A46S-01 17 9684878 9684878 C A DHRS7C Missense_Mutation p.R63M 0.28 deleterious(0) probably_damaging(0.991) TCGA-62-A46S-01 19 1207146 1207146 G C STK11 Missense_Mutation p.K78N 0.54 deleterious(0) probably_damaging(1) TCGA-62-A46S-01 19 12958667 12958667 T A MAST1 Silent p.T190T 0.62 TCGA-62-A46S-01 19 13445289 13445289 C A CACNA1A Missense_Mutation p.R367S 0.52 possibly_damaging(0.765) TCGA-62-A46S-01 19 22363054 22363054 A T ZNF676 Missense_Mutation p.F489I 0.41 tolerated(0.22) benign(0.016) TCGA-62-A46S-01 19 31769415 31769415 C A TSHZ3 Silent p.T428T 0.22 TCGA-62-A46S-01 19 31769417 31769417 T G TSHZ3 Missense_Mutation p.T428P 0.21 deleterious(0.02) benign(0.115) TCGA-62-A46S-01 19 39421207 39421207 T G SARS2 Missense_Mutation p.Q57P 0.08 deleterious(0.05) benign(0.221) TCGA-62-A46S-01 19 44352476 44352476 G T ZNF283 Nonsense_Mutation p.E575* 0.14 TCGA-62-A46S-01 19 44932524 44932524 A T ZNF229 Missense_Mutation p.L811Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-62-A46S-01 19 49228132 49228132 C A RASIP1 Missense_Mutation p.G738V 0.34 tolerated(0.12) benign(0.054) TCGA-62-A46S-01 19 51499350 51499350 C - KLK8 Frame_Shift_Del p.D295Tfs*7 0.19 TCGA-62-A46S-01 19 52091760 52091760 C A ZNF175 3'UTR 0.28 TCGA-62-A46S-01 19 53572311 53572311 T C ZNF160 Silent p.Q492Q 0.33 TCGA-62-A46S-01 19 55044971 55044971 C T KIR3DX1 Silent p.L31L 0.34 TCGA-62-A46S-01 19 55316317 55316317 T C KIR2DL4 Missense_Mutation p.L49P 0.58 deleterious(0) probably_damaging(1) TCGA-62-A46S-01 19 56223170 56223170 G T NLRP9 Missense_Mutation p.L947M 0.20 deleterious(0.01) probably_damaging(0.953) TCGA-62-A46S-01 19 56539799 56539799 C T NLRP5 Missense_Mutation p.R734W 0.04 deleterious(0.05) benign(0.025) TCGA-62-A46S-01 19 57642047 57642047 G T USP29 Missense_Mutation p.K668N 0.21 deleterious(0.02) benign(0.054) TCGA-62-A46S-01 19 58723691 58723691 G A ZNF274 Missense_Mutation p.V381M 0.39 tolerated(0.05) benign(0.115) TCGA-62-A46S-01 19 9074337 9074337 C T MUC16 Missense_Mutation p.S4370N 0.37 unknown(0) TCGA-62-A46S-01 1 116931575 116931575 G A ATP1A1 Missense_Mutation p.D230N 0.05 tolerated(0.09) benign(0.004) TCGA-62-A46S-01 1 151079590 151079590 G A GABPB2 Missense_Mutation p.V272I 0.08 deleterious(0.01) possibly_damaging(0.799) TCGA-62-A46S-01 1 18152796 18152796 G A ACTL8 Missense_Mutation p.V295M 0.28 tolerated(0.14) benign(0.211) TCGA-62-A46S-01 1 190250881 190250881 C A BRINP3 Splice_Site p.X79_splice 0.22 TCGA-62-A46S-01 1 210761257 210761257 A T HHAT Silent p.P354P 0.16 TCGA-62-A46S-01 1 216496887 216496887 G A USH2A Silent p.Y493Y 0.31 TCGA-62-A46S-01 1 216850763 216850763 G C ESRRG Missense_Mutation p.P48A 0.49 deleterious(0) benign(0.266) TCGA-62-A46S-01 1 247051502 247051502 T A AHCTF1 Missense_Mutation p.T777S 0.46 tolerated(0.44) benign(0.013) TCGA-62-A46S-01 1 248039819 248039819 C T TRIM58 3'UTR 0.22 TCGA-62-A46S-01 1 248263233 248263233 C T OR2L13 Missense_Mutation p.L186F 0.06 deleterious(0) possibly_damaging(0.884) TCGA-62-A46S-01 1 248652191 248652191 G A OR2T5 Missense_Mutation p.C101Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-62-A46S-01 20 16486741 16486741 G A KIF16B Missense_Mutation p.T265I 0.33 deleterious(0) probably_damaging(1) TCGA-62-A46S-01 20 29632656 29632656 A C FRG1B Missense_Mutation p.K157N 0.04 deleterious(0.04) possibly_damaging(0.77) TCGA-62-A46S-01 20 35173418 35173418 A T MYL9 Missense_Mutation p.N44I 0.06 deleterious(0) probably_damaging(0.997) TCGA-62-A46S-01 20 43384725 43384725 G T RIMS4 3'UTR 0.16 TCGA-62-A46S-01 20 44594372 44594372 G A ZNF335 Missense_Mutation p.R333W 0.10 deleterious(0) probably_damaging(1) TCGA-62-A46S-01 22 18021562 18021562 G A CECR2 Missense_Mutation p.R619Q 0.29 tolerated(0.27) benign(0.021) TCGA-62-A46S-01 22 26156998 26156998 G T MYO18B 5'UTR 0.14 TCGA-62-A46S-01 2 131487317 131487317 G A GPR148 Missense_Mutation p.G198E 0.43 tolerated(0.21) benign(0.062) TCGA-62-A46S-01 2 132241578 132241578 G A MZT2A 3'UTR 0.28 TCGA-62-A46S-01 2 171323168 171323168 C A MYO3B Missense_Mutation p.S987R 0.26 tolerated(1) benign(0.001) TCGA-62-A46S-01 2 183723526 183723526 C T FRZB Missense_Mutation p.G172R 0.28 tolerated(0.2) possibly_damaging(0.845) TCGA-62-A46S-01 2 207615733 207615733 C A MDH1B Missense_Mutation p.R326M 0.26 deleterious(0) probably_damaging(0.923) TCGA-62-A46S-01 2 3428362 3428362 G A TRAPPC12 Missense_Mutation p.E449K 0.24 tolerated(0.08) possibly_damaging(0.709) TCGA-62-A46S-01 2 44547591 44547591 C T SLC3A1 Missense_Mutation p.T624I 0.30 deleterious(0) probably_damaging(0.955) TCGA-62-A46S-01 2 60687848 60687848 G A BCL11A Silent p.P733P 0.31 TCGA-62-A46S-01 2 85924776 85924776 C T GNLY Missense_Mutation p.L135F 0.14 tolerated(0.11) possibly_damaging(0.834) TCGA-62-A46S-01 2 97868070 97868070 G A ANKRD36 Missense_Mutation p.E967K 0.33 tolerated_low_confidence(0.73) benign(0.037) TCGA-62-A46S-01 2 99232733 99232733 T A UNC50 Nonsense_Mutation p.Y155* 0.39 TCGA-62-A46S-01 3 123016222 123016222 A G ADCY5 Missense_Mutation p.F970L 0.26 tolerated(0.65) benign(0.002) TCGA-62-A46S-01 3 184294836 184294836 G T EPHB3 Nonsense_Mutation p.E407* 0.32 TCGA-62-A46S-01 3 33109737 33109737 G T GLB1 Missense_Mutation p.R148S 0.27 deleterious(0.03) probably_damaging(0.997) TCGA-62-A46S-01 3 51733559 51733559 G T TEX264 Silent p.V206V 0.21 TCGA-62-A46S-01 3 75475702 75475702 C A FAM86DP RNA 0.35 TCGA-62-A46S-01 4 158074058 158074058 G T GLRB Missense_Mutation p.A365S 0.06 tolerated(0.85) possibly_damaging(0.596) TCGA-62-A46S-01 4 65155437 65155437 T A TECRL Missense_Mutation p.N275Y 0.24 deleterious(0.01) possibly_damaging(0.819) TCGA-62-A46S-01 4 65155440 65155440 G A TECRL Missense_Mutation p.P274S 0.24 tolerated(0.14) benign(0.026) TCGA-62-A46S-01 4 79525509 79525509 G C ANXA3 Missense_Mutation p.E290Q 0.06 tolerated(0.12) probably_damaging(0.994) TCGA-62-A46S-01 4 98761945 98761945 C A STPG2 Nonsense_Mutation p.E395* 0.29 TCGA-62-A46S-01 5 140530738 140530738 G T PCDHB6 Silent p.R300R 0.33 TCGA-62-A46S-01 5 140740624 140740624 G T PCDHGB2 Missense_Mutation p.D308Y 0.53 deleterious(0) probably_damaging(1) TCGA-62-A46S-01 5 140755330 140755330 C A PCDHGA6 Silent p.P560P 0.30 TCGA-62-A46S-01 5 140782699 140782699 G T PCDHGA9 Silent p.A60A 0.24 TCGA-62-A46S-01 5 169503079 169503079 C A DOCK2 Silent p.V1619V 0.27 TCGA-62-A46S-01 5 169503080 169503080 C A DOCK2 Silent p.R1620R 0.27 TCGA-62-A46S-01 5 177059206 177059206 C A RP11-1277A3.2 Intron 0.43 TCGA-62-A46S-01 5 26881169 26881169 G T CDH9 3'UTR 0.19 TCGA-62-A46S-01 5 32789651 32789651 T A AC026703.1 Missense_Mutation p.H48Q 0.25 benign(0.402) TCGA-62-A46S-01 5 33937685 33937685 G T RXFP3 Silent p.L280L 0.17 TCGA-62-A46S-01 5 3599910 3599910 G T IRX1 Missense_Mutation p.G283V 0.44 deleterious(0.04) probably_damaging(0.994) TCGA-62-A46S-01 5 95748044 95748044 G T PCSK1 Missense_Mutation p.A287D 0.20 deleterious(0) probably_damaging(1) TCGA-62-A46S-01 6 14135362 14135362 C T CD83 Silent p.I171I 0.09 TCGA-62-A46S-01 6 29364791 29364791 G T OR12D2 Silent p.L105L 0.19 TCGA-62-A46S-01 6 29364792 29364792 G T OR12D2 Missense_Mutation p.G106C 0.19 deleterious(0.02) probably_damaging(0.954) TCGA-62-A46S-01 6 31868724 31868724 C A ZBTB12 Missense_Mutation p.R120L 0.26 deleterious(0) possibly_damaging(0.569) TCGA-62-A46S-01 7 100388666 100388666 C - ZAN Frame_Shift_Del p.Q2487Rfs*12 0.28 TCGA-62-A46S-01 7 103131276 103131276 T C RELN Silent p.R3148R 0.14 TCGA-62-A46S-01 7 11676204 11676204 T A THSD7A Missense_Mutation p.Q192L 0.15 deleterious(0) benign(0.028) TCGA-62-A46S-01 7 117874861 117874861 G A ANKRD7 Missense_Mutation p.C134Y 0.31 tolerated(0.51) benign(0.09) TCGA-62-A46S-01 7 123104950 123104950 C T IQUB Silent p.A565A 0.05 TCGA-62-A46S-01 7 127017243 127017243 C T ZNF800 Missense_Mutation p.D100N 0.32 deleterious(0.02) benign(0.398) TCGA-62-A46S-01 7 149152397 149152397 G A ZNF777 Silent p.V239V 0.31 TCGA-62-A46S-01 7 150772562 150772563 - GGGTGACGGGGCT SLC4A2 Frame_Shift_Ins p.L1095Gfs*41 0.10 TCGA-62-A46S-01 7 44180913 44180913 C T MYL7 5'UTR 0.20 TCGA-62-A46S-01 7 74005244 74005244 A T GTF2IRD1 Missense_Mutation p.D862V 0.32 deleterious(0.01) possibly_damaging(0.686) TCGA-62-A46S-01 7 82584422 82584422 C T PCLO Silent p.G1949G 0.32 TCGA-62-A46S-01 8 142222496 142222496 C G SLC45A4 Missense_Mutation p.V650L 0.05 tolerated(0.43) possibly_damaging(0.885) TCGA-62-A46S-01 8 146156227 146156227 C A ZNF16 Missense_Mutation p.R649M 0.04 deleterious(0.01) probably_damaging(0.946) TCGA-62-A46S-01 8 57026128 57026128 G T MOS Silent p.I138I 0.05 TCGA-62-A46S-01 8 82391731 82391731 C A FABP4 Missense_Mutation p.G89V 0.67 deleterious(0.01) benign(0.336) TCGA-62-A46S-01 8 99440232 99440232 G A KCNS2 Missense_Mutation p.V9M 0.30 deleterious(0.04) benign(0) TCGA-62-A46S-01 9 100678545 100678545 G A C9orf156 Missense_Mutation p.S51F 0.18 tolerated(0.1) possibly_damaging(0.863) TCGA-62-A46S-01 9 107558439 107558439 C G ABCA1 Silent p.V1759V 0.39 TCGA-62-A46S-01 9 118949873 118949873 C T PAPPA Missense_Mutation p.L286F 0.23 tolerated(0.13) possibly_damaging(0.879) TCGA-62-A46S-01 9 119188048 119188048 C A ASTN2 3'UTR 0.30 TCGA-62-A46S-01 9 130984810 130984810 G A DNM1 Missense_Mutation p.E355K 0.30 deleterious(0.02) possibly_damaging(0.645) TCGA-62-A46S-01 9 34996831 34996831 G A DNAJB5 Missense_Mutation p.V375M 0.09 deleterious(0.03) benign(0.278) TCGA-62-A46S-01 9 40774437 40774437 C A ZNF658 Missense_Mutation p.D280Y 0.19 deleterious(0.02) benign(0.36) TCGA-62-A46S-01 X 100276115 100276115 G A TRMT2B Silent p.I347I 0.45 TCGA-62-A46S-01 X 1317534 1317534 G T CRLF2 Silent p.A177A 0.28 TCGA-62-A46S-01 X 1317535 1317535 G T CRLF2 Missense_Mutation p.A177D 0.29 tolerated(0.19) benign(0.046) TCGA-62-A46S-01 X 135431150 135431150 C T GPR112 Missense_Mutation p.S1762F 0.57 tolerated(0.09) benign(0.071) TCGA-62-A46S-01 X 99942326 99942326 C A SYTL4 Intron 0.67 TCGA-62-A46U-01 10 124802687 124802687 G A ACADSB Silent p.K269K 0.15 TCGA-62-A46U-01 10 127504763 127504763 G A UROS Missense_Mutation p.P44S 0.16 tolerated(0.62) benign(0.007) TCGA-62-A46U-01 10 91143623 91143623 G A IFIT1B Missense_Mutation p.V185I 0.10 tolerated(0.45) benign(0.005) TCGA-62-A46U-01 10 95353756 95353756 G A RBP4 Missense_Mutation p.T131M 0.22 deleterious(0) probably_damaging(0.943) TCGA-62-A46U-01 11 10019867 10019867 G T SBF2 Missense_Mutation p.H307Q 0.14 tolerated(0.08) benign(0.017) TCGA-62-A46U-01 11 5373653 5373653 T A OR51B6 Missense_Mutation p.S306T 0.11 tolerated(0.2) benign(0.046) TCGA-62-A46U-01 11 57995989 57995989 G A OR10Q1 Missense_Mutation p.A120V 0.18 deleterious(0.04) possibly_damaging(0.848) TCGA-62-A46U-01 11 60107390 60107390 G C MS4A6E Missense_Mutation p.V136L 0.17 deleterious(0.04) benign(0.355) TCGA-62-A46U-01 11 62656120 62656120 G A SLC3A2 Silent p.L617L 0.13 TCGA-62-A46U-01 11 65321783 65321783 C A LTBP3 Missense_Mutation p.D134Y 0.14 deleterious(0.02) probably_damaging(0.976) TCGA-62-A46U-01 11 6816354 6816354 C T OR6A2 Missense_Mutation p.D196N 0.07 tolerated(0.09) probably_damaging(0.914) TCGA-62-A46U-01 12 119592143 119592143 G A SRRM4 Missense_Mutation p.R496H 0.37 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-62-A46U-01 15 74005370 74005370 G A CD276 3'UTR 0.19 TCGA-62-A46U-01 16 27238081 27238081 G A NSMCE1 Missense_Mutation p.A187V 0.17 tolerated(0.52) benign(0.047) TCGA-62-A46U-01 16 31501526 31501526 C G SLC5A2 Missense_Mutation p.C589W 0.12 deleterious(0.02) benign(0.021) TCGA-62-A46U-01 17 7578461 7578461 C G TP53 Missense_Mutation p.V157L 0.22 tolerated(0.51) possibly_damaging(0.838) TCGA-62-A46U-01 19 50098989 50098989 C G PRR12 Missense_Mutation p.A466G 0.16 possibly_damaging(0.567) TCGA-62-A46U-01 19 52250043 52250043 C T FPR1 Missense_Mutation p.V69M 0.08 deleterious(0.01) benign(0.426) TCGA-62-A46U-01 19 54515330 54515330 G A CACNG6 Missense_Mutation p.G224S 0.10 deleterious(0.03) benign(0.223) TCGA-62-A46U-01 19 54872693 54872693 C T LAIR1 Missense_Mutation p.R65K 0.08 tolerated(0.84) benign(0.105) TCGA-62-A46U-01 19 57335691 57335691 C T PEG3 Silent p.P111P 0.16 TCGA-62-A46U-01 1 11345744 11345744 C G UBIAD1 Silent p.L191L 0.21 TCGA-62-A46U-01 1 114940327 114940327 A G TRIM33 Silent p.F1109F 0.08 TCGA-62-A46U-01 1 39340942 39340942 G A GJA9 Nonsense_Mutation p.R277* 0.16 TCGA-62-A46U-01 20 31021631 31021631 G C ASXL1 Missense_Mutation p.D544H 0.07 deleterious(0.04) probably_damaging(0.999) TCGA-62-A46U-01 20 33297255 33297255 A C TP53INP2 Missense_Mutation p.T114P 0.18 deleterious(0.03) probably_damaging(0.988) TCGA-62-A46U-01 20 49204387 49204387 C T FAM65C Missense_Mutation p.D898N 0.06 tolerated(0.11) benign(0.044) TCGA-62-A46U-01 21 44171239 44171239 T A PDE9A Missense_Mutation p.C223S 0.08 tolerated(0.1) benign(0.041) TCGA-62-A46U-01 22 50302925 50302925 G A ALG12 Silent p.Y245Y 0.12 TCGA-62-A46U-01 2 166032861 166032861 C T SCN3A Missense_Mutation p.R15H 0.28 tolerated(0.12) probably_damaging(0.995) TCGA-62-A46U-01 2 179422793 179422793 A C TTN Silent p.T29096T 0.12 TCGA-62-A46U-01 2 234622244 234622244 G C UGT1A5 Missense_Mutation p.D203H 0.09 deleterious(0.02) possibly_damaging(0.819) TCGA-62-A46U-01 2 61333728 61333728 G T KIAA1841 Missense_Mutation p.K514N 0.16 tolerated(0.15) benign(0) TCGA-62-A46U-01 2 70439765 70439765 T C TIA1 3'UTR 0.07 TCGA-62-A46U-01 2 73868507 73868507 C A NAT8 Silent p.T83T 0.21 TCGA-62-A46U-01 3 118865427 118865427 G A C3orf30 Missense_Mutation p.D131N 0.20 deleterious(0.05) benign(0.003) TCGA-62-A46U-01 3 138187550 138187557 CAACTTGC - ESYT3 Frame_Shift_Del p.N455Efs*5 0.20 TCGA-62-A46U-01 3 48612237 48612237 C A COL7A1 Missense_Mutation p.G2114V 0.19 unknown(0) TCGA-62-A46U-01 4 1729676 1729676 G A TACC3 Missense_Mutation p.E183K 0.18 tolerated(0.2) benign(0.065) TCGA-62-A46U-01 5 112487088 112487088 C A MCC Missense_Mutation p.G220V 0.15 deleterious(0.01) possibly_damaging(0.907) TCGA-62-A46U-01 5 135692425 135692425 C T TRPC7 Silent p.S217S 0.23 TCGA-62-A46U-01 5 86708497 86708497 T C CCNH Missense_Mutation p.K39E 0.16 tolerated(0.26) benign(0.004) TCGA-62-A46U-01 6 159655177 159655177 C A FNDC1 Silent p.G1211G 0.15 TCGA-62-A46U-01 6 32097403 32097403 C T FKBPL Missense_Mutation p.S52N 0.10 tolerated_low_confidence(0.25) benign(0.058) TCGA-62-A46U-01 7 140156559 140156559 G A MKRN1 Silent p.N293N 0.17 TCGA-62-A46U-01 7 141708490 141708490 C G MGAM Missense_Mutation p.D104E 0.13 tolerated(0.57) benign(0.021) TCGA-62-A46U-01 7 143175312 143175312 A T TAS2R41 Missense_Mutation p.H116L 0.21 deleterious(0.03) probably_damaging(0.995) TCGA-62-A46U-01 7 44924092 44924092 G T PURB Missense_Mutation p.Q286K 0.19 tolerated(0.19) benign(0.138) TCGA-62-A46U-01 7 55242466 55242480 GAATTAAGAGAAGCA - EGFR In_Frame_Del p.E746_A750del 0.12 TCGA-62-A46U-01 7 77975262 77975262 G A MAGI2 Missense_Mutation p.P401L 0.17 deleterious(0.01) probably_damaging(0.93) TCGA-62-A46U-01 9 120475597 120475597 G T TLR4 Silent p.G397G 0.16 TCGA-62-A46U-01 X 123554470 123554470 C A TENM1 Missense_Mutation p.G1558V 0.10 deleterious(0) probably_damaging(1) TCGA-62-A46U-01 X 148770624 148770624 C A MAGEA11 5'UTR 0.16 TCGA-62-A46U-01 X 67937285 67937285 C T STARD8 Missense_Mutation p.R177C 0.19 tolerated(0.08) benign(0.002) TCGA-62-A46V-01 10 31815754 31815754 G A ZEB1 Missense_Mutation p.M980I 0.26 deleterious(0) probably_damaging(0.956) TCGA-62-A46V-01 11 45671564 45671564 C T CHST1 Missense_Mutation p.D304N 0.26 deleterious(0) probably_damaging(1) TCGA-62-A46V-01 11 47436091 47436091 G T SLC39A13 Intron 0.29 TCGA-62-A46V-01 11 77378137 77378137 A C RSF1 Missense_Mutation p.I1384S 0.23 deleterious_low_confidence(0.01) benign(0.35) TCGA-62-A46V-01 11 93821988 93821988 C A HEPHL1 Silent p.V716V 0.29 TCGA-62-A46V-01 12 130898840 130898840 G A RIMBP2 Nonsense_Mutation p.R828* 0.26 TCGA-62-A46V-01 12 40258684 40258684 C A SLC2A13 Missense_Mutation p.G400V 0.26 deleterious(0) probably_damaging(0.996) TCGA-62-A46V-01 12 44130210 44130210 C T PUS7L Missense_Mutation p.D567N 0.17 tolerated(0.31) benign(0.026) TCGA-62-A46V-01 13 86368632 86368632 T A SLITRK6 Missense_Mutation p.E671V 0.25 tolerated(0.17) possibly_damaging(0.548) TCGA-62-A46V-01 14 106110069 106110069 G A IGHG2 Silent p.S183S 0.25 TCGA-62-A46V-01 14 88477377 88477377 C T GPR65 Silent p.L62L 0.29 TCGA-62-A46V-01 15 35086889 35086889 G A ACTC1 Missense_Mutation p.R41W 0.32 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-62-A46V-01 15 43621188 43621188 A C LCMT2 Silent p.G500G 0.21 TCGA-62-A46V-01 15 43821544 43821544 C T MAP1A Missense_Mutation p.R2625W 0.30 probably_damaging(1) TCGA-62-A46V-01 16 55360339 55360339 C T IRX6 Missense_Mutation p.A46V 0.22 tolerated(0.06) benign(0.027) TCGA-62-A46V-01 16 56667864 56667864 T C MT1M 3'UTR 0.25 TCGA-62-A46V-01 17 19470499 19470499 A T SLC47A1 Missense_Mutation p.I423F 0.18 deleterious(0) possibly_damaging(0.635) TCGA-62-A46V-01 17 55193506 55193506 G T AKAP1 Silent p.G772G 0.22 TCGA-62-A46V-01 17 61885097 61885097 C T DDX42 Missense_Mutation p.A287V 0.26 tolerated(0.24) probably_damaging(0.993) TCGA-62-A46V-01 17 72862631 72862631 G A FDXR Silent p.N153N 0.28 TCGA-62-A46V-01 17 73059133 73059133 G A KCTD2 Silent p.S261S 0.07 TCGA-62-A46V-01 17 77043679 77043679 G C C1QTNF1 Missense_Mutation p.A119P 0.20 tolerated(0.75) benign(0.004) TCGA-62-A46V-01 18 2913354 2913354 C T EMILIN2 Silent p.Y1038Y 0.06 TCGA-62-A46V-01 18 77624226 77624226 G A KCNG2 Missense_Mutation p.V187M 0.16 deleterious(0) benign(0.135) TCGA-62-A46V-01 19 34832983 34832983 C T KIAA0355 Missense_Mutation p.P715L 0.18 tolerated_low_confidence(0.26) benign(0) TCGA-62-A46V-01 19 57328069 57328069 G A PEG3 Missense_Mutation p.H581Y 0.34 deleterious(0) benign(0.005) TCGA-62-A46V-01 19 7594575 7594575 G A MCOLN1 Missense_Mutation p.V446M 0.26 deleterious(0) probably_damaging(1) TCGA-62-A46V-01 1 150933236 150933236 G T SETDB1 Nonsense_Mutation p.E900* 0.36 TCGA-62-A46V-01 1 158735662 158735662 C T OR6N1 Missense_Mutation p.D271N 0.18 tolerated(0.08) probably_damaging(0.914) TCGA-62-A46V-01 1 19505624 19505624 G C UBR4 Missense_Mutation p.R759G 0.38 possibly_damaging(0.674) TCGA-62-A46V-01 1 205238182 205238182 G A TMCC2 Silent p.R284R 0.17 TCGA-62-A46V-01 1 3673432 3673432 A T CCDC27 Missense_Mutation p.Y230F 0.25 deleterious(0.04) possibly_damaging(0.801) TCGA-62-A46V-01 1 43826790 43826790 G A CDC20 Splice_Site p.X360_splice 0.24 TCGA-62-A46V-01 1 62293120 62293120 A G INADL Silent p.K615K 0.26 TCGA-62-A46V-01 20 62196238 62196238 G C HELZ2 Missense_Mutation p.Q1313E 0.23 tolerated(0.18) benign(0.004) TCGA-62-A46V-01 21 40795120 40795120 C T LCA5L Missense_Mutation p.V207I 0.11 deleterious(0.01) possibly_damaging(0.506) TCGA-62-A46V-01 22 36900343 36900343 G A FOXRED2 Missense_Mutation p.T284M 0.04 tolerated(0.06) possibly_damaging(0.513) TCGA-62-A46V-01 2 124999953 124999953 C G CNTNAP5 Missense_Mutation p.Q122E 0.15 deleterious(0.01) benign(0.02) TCGA-62-A46V-01 2 130725780 130725780 C A RAB6C-AS1 RNA 0.19 TCGA-62-A46V-01 2 175618381 175618381 A C CHRNA1 Missense_Mutation p.Y235D 0.09 tolerated(0.13) probably_damaging(0.991) TCGA-62-A46V-01 2 219301263 219301263 G C VIL1 Missense_Mutation p.G629R 0.29 deleterious(0) probably_damaging(0.987) TCGA-62-A46V-01 2 225339003 225339003 G A CUL3 Nonsense_Mutation p.R756* 0.10 TCGA-62-A46V-01 2 44586872 44586872 T C PREPL 5'UTR 0.33 TCGA-62-A46V-01 2 68358560 68358560 C T WDR92 Missense_Mutation p.R295Q 0.23 deleterious(0) probably_damaging(0.988) TCGA-62-A46V-01 3 10491352 10491352 G A ATP2B2 5'UTR 0.35 TCGA-62-A46V-01 3 150285753 150285753 A C EIF2A Missense_Mutation p.N205T 0.17 tolerated(0.12) benign(0.206) TCGA-62-A46V-01 3 183910606 183910606 G A ABCF3 Missense_Mutation p.G558S 0.17 deleterious(0) probably_damaging(0.998) TCGA-62-A46V-01 3 38938335 38938335 C A SCN11A Splice_Site p.X801_splice 0.20 TCGA-62-A46V-01 3 41268759 41268760 - ACG CTNNB1 In_Frame_Ins p.Y333_E334insD 0.11 TCGA-62-A46V-01 3 52813575 52813575 A G ITIH1 Missense_Mutation p.K180E 0.20 deleterious(0) possibly_damaging(0.529) TCGA-62-A46V-01 3 69120701 69120701 C T UBA3 Missense_Mutation p.R111K 0.29 deleterious(0) probably_damaging(1) TCGA-62-A46V-01 5 127483420 127483420 A G SLC12A2 Missense_Mutation p.Q627R 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-62-A46V-01 5 140203677 140203677 C G PCDHA5 Missense_Mutation p.P773A 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-62-A46V-01 5 140236997 140236997 C T PCDHA10 Missense_Mutation p.A455V 0.23 deleterious_low_confidence(0.04) benign(0.133) TCGA-62-A46V-01 5 54771207 54771207 A G PPAP2A Intron 0.20 TCGA-62-A46V-01 5 74324730 74324730 A - GCNT4 Frame_Shift_Del p.F378Sfs*21 0.19 TCGA-62-A46V-01 6 17629177 17629177 C A NUP153 Missense_Mutation p.G1085C 0.16 deleterious(0) possibly_damaging(0.895) TCGA-62-A46V-01 6 28219797 28219797 G T ZKSCAN4 5'UTR 0.19 TCGA-62-A46V-01 6 37414095 37414095 G A CMTR1 Missense_Mutation p.G105E 0.24 deleterious(0) probably_damaging(1) TCGA-62-A46V-01 6 44219921 44219921 A G HSP90AB1 Missense_Mutation p.K550E 0.27 tolerated(0.06) benign(0.113) TCGA-62-A46V-01 6 51751972 51751972 C T PKHD1 Silent p.P2356P 0.27 TCGA-62-A46V-01 6 75838065 75838065 A G COL12A1 Missense_Mutation p.I2096T 0.40 benign(0.09) TCGA-62-A46V-01 7 100962287 100962287 A G RABL5 Silent p.F22F 0.23 TCGA-62-A46V-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.16 deleterious(0) probably_damaging(0.967) TCGA-62-A46V-01 7 26232191 26232191 T C HNRNPA2B1 Missense_Mutation p.Y336C 0.25 deleterious(0) probably_damaging(0.962) TCGA-62-A46V-01 7 82584955 82584955 C T PCLO Missense_Mutation p.D1772N 0.25 unknown(0) TCGA-62-A46V-01 8 102705020 102705020 G A NCALD Silent p.D161D 0.23 TCGA-62-A46V-01 8 110466981 110466981 C T PKHD1L1 Silent p.H2258H 0.28 TCGA-62-A46V-01 8 114186064 114186064 T - CSMD3 Frame_Shift_Del p.K199Rfs*7 0.23 TCGA-62-A46V-01 8 13948147 13948147 C A SGCZ Splice_Site p.X249_splice 0.24 TCGA-62-A46V-01 9 2115837 2115837 G T SMARCA2 Missense_Mutation p.D1158Y 0.33 probably_damaging(0.961) TCGA-62-A46V-01 9 379811 379811 C T DOCK8 Silent p.I827I 0.18 TCGA-62-A46V-01 X 117809951 117809951 A T DOCK11 Missense_Mutation p.E1751V 0.17 deleterious(0) possibly_damaging(0.623) TCGA-62-A46V-01 X 57146440 57146440 C A SPIN2B Missense_Mutation p.G208V 0.17 tolerated(0.29) benign(0.027) TCGA-62-A46Y-01 10 43612164 43612164 G A RET Missense_Mutation p.V757M 0.10 deleterious(0) probably_damaging(0.999) TCGA-62-A46Y-01 11 108160412 108160412 A C ATM Missense_Mutation p.K1440N 0.29 tolerated(0.49) benign(0.122) TCGA-62-A46Y-01 11 121477963 121477963 C T SORL1 Silent p.I1710I 0.17 TCGA-62-A46Y-01 11 123909002 123909002 G T OR10G7 Missense_Mutation p.A236D 0.11 deleterious(0) probably_damaging(1) TCGA-62-A46Y-01 11 7064712 7064713 - T NLRP14 Frame_Shift_Ins p.A488Cfs*22 0.12 TCGA-62-A46Y-01 12 2602399 2602399 G A CACNA1C Silent p.T320T 0.31 TCGA-62-A46Y-01 12 29462141 29462141 G T FAR2 Missense_Mutation p.G249V 0.04 deleterious(0) probably_damaging(0.951) TCGA-62-A46Y-01 12 56737294 56737294 A G STAT2 Missense_Mutation p.I812T 0.30 deleterious_low_confidence(0) benign(0.154) TCGA-62-A46Y-01 14 74970709 74970709 C T LTBP2 Missense_Mutation p.R1501Q 0.15 tolerated(1) benign(0.016) TCGA-62-A46Y-01 15 27126073 27126073 T G GABRA5 Missense_Mutation p.L56R 0.29 deleterious(0) probably_damaging(1) TCGA-62-A46Y-01 15 40675020 40675020 C T KNSTRN 5'UTR 0.14 TCGA-62-A46Y-01 15 41820167 41820167 T G RPAP1 Missense_Mutation p.D440A 0.15 deleterious(0) probably_damaging(0.974) TCGA-62-A46Y-01 15 49716711 49716711 A G FGF7 Missense_Mutation p.T73A 0.18 deleterious(0.01) probably_damaging(0.989) TCGA-62-A46Y-01 15 65678309 65678309 C T IGDCC4 Missense_Mutation p.A1014T 0.30 tolerated(0.22) benign(0.003) TCGA-62-A46Y-01 16 68021789 68021789 C A DPEP2 Missense_Mutation p.G391V 0.22 tolerated(0.14) possibly_damaging(0.698) TCGA-62-A46Y-01 17 45689930 45689930 G T NPEPPS Nonsense_Mutation p.E734* 0.18 TCGA-62-A46Y-01 17 75493407 75493407 C T SEPT9 Silent p.T528T 0.07 TCGA-62-A46Y-01 17 7578268 7578268 A C TP53 Missense_Mutation p.L194R 0.41 deleterious(0) probably_damaging(1) TCGA-62-A46Y-01 19 21365800 21365801 - A ZNF431 Nonsense_Mutation p.Y232* 0.18 TCGA-62-A46Y-01 19 56114231 56114231 C T ZNF524 Silent p.A251A 0.25 TCGA-62-A46Y-01 19 7965114 7965114 G A LRRC8E Silent p.G569G 0.09 TCGA-62-A46Y-01 1 170931113 170931113 T G MROH9 Nonsense_Mutation p.L124* 0.26 TCGA-62-A46Y-01 1 33149742 33149742 A G RBBP4 3'UTR 0.24 TCGA-62-A46Y-01 1 35926030 35926030 C A KIAA0319L Missense_Mutation p.D435Y 0.21 deleterious(0) probably_damaging(1) TCGA-62-A46Y-01 20 34214249 34214249 C - CPNE1 Frame_Shift_Del p.V515Sfs*65 0.08 TCGA-62-A46Y-01 22 30741108 30741108 A C SF3A1 Missense_Mutation p.D155E 0.07 tolerated(0.09) probably_damaging(0.935) TCGA-62-A46Y-01 2 141819775 141819775 G A LRP1B Nonsense_Mutation p.R361* 0.19 TCGA-62-A46Y-01 2 152235965 152235965 C A TNFAIP6 Missense_Mutation p.S251Y 0.19 deleterious(0.02) benign(0.235) TCGA-62-A46Y-01 2 54872458 54872458 C T SPTBN1 Silent p.D1454D 0.17 TCGA-62-A46Y-01 3 100645220 100645220 C T ABI3BP Missense_Mutation p.G69E 0.10 deleterious(0) probably_damaging(0.931) TCGA-62-A46Y-01 3 49690113 49690115 GAG - BSN In_Frame_Del p.E1045del 0.10 TCGA-62-A46Y-01 4 124474 124474 C T ZNF718 RNA 0.29 TCGA-62-A46Y-01 4 2306592 2306592 T G ZFYVE28 Missense_Mutation p.E492A 0.14 deleterious_low_confidence(0) possibly_damaging(0.881) TCGA-62-A46Y-01 5 127626488 127626489 GC A FBN2 Frame_Shift_Del p.C2127Ffs*122 0.15 TCGA-62-A46Y-01 5 137727136 137727136 C G KDM3B Missense_Mutation p.F605L 0.23 tolerated_low_confidence(0.26) probably_damaging(0.952) TCGA-62-A46Y-01 5 140475432 140475432 C A PCDHB2 Missense_Mutation p.T353K 0.21 deleterious_low_confidence(0.03) benign(0.097) TCGA-62-A46Y-01 6 170592399 170592399 G A DLL1 Silent p.D656D 0.28 TCGA-62-A46Y-01 7 107236322 107236322 C T BCAP29 Missense_Mutation p.R119C 0.08 deleterious(0.01) probably_damaging(1) TCGA-62-A46Y-01 7 146536853 146536853 G T CNTNAP2 Missense_Mutation p.V87F 0.15 deleterious(0.03) probably_damaging(0.979) TCGA-62-A46Y-01 8 10469745 10469745 C T RP1L1 Silent p.S621S 0.05 TCGA-62-A46Y-01 X 109694677 109694677 T C RGAG1 Missense_Mutation p.S278P 0.24 deleterious(0.05) benign(0.226) TCGA-62-A46Y-01 X 118222522 118222522 C G KIAA1210 Missense_Mutation p.V891L 0.20 tolerated(0.07) possibly_damaging(0.585) TCGA-62-A46Y-01 X 119249757 119249757 C T RHOXF1 Missense_Mutation p.V6I 0.21 tolerated_low_confidence(0.89) benign(0.001) TCGA-62-A46Y-01 X 44928995 44928996 CT - KDM6A Frame_Shift_Del p.S700Lfs*29 0.21 TCGA-62-A46Y-01 X 53267381 53267381 C T IQSEC2 Missense_Mutation p.D1075N 0.22 deleterious(0) probably_damaging(0.955) TCGA-62-A470-01 10 123258034 123258034 A T FGFR2 Missense_Mutation p.N550K 0.29 deleterious(0) probably_damaging(1) TCGA-62-A470-01 10 22019890 22019890 C G MLLT10 Missense_Mutation p.L709V 0.16 tolerated(0.8) benign(0.003) TCGA-62-A470-01 10 24508697 24508697 G A KIAA1217 Silent p.G71G 0.13 TCGA-62-A470-01 10 51556795 51556795 T A MSMB Missense_Mutation p.W52R 0.42 deleterious(0) probably_damaging(0.998) TCGA-62-A470-01 10 90665309 90665309 C T STAMBPL1 Missense_Mutation p.T47I 0.25 deleterious(0) benign(0.273) TCGA-62-A470-01 10 95168668 95168668 C T MYOF Missense_Mutation p.R202H 0.15 deleterious(0) probably_damaging(1) TCGA-62-A470-01 11 119549226 119549226 C G PVRL1 Missense_Mutation p.R110P 0.50 tolerated(0.15) possibly_damaging(0.55) TCGA-62-A470-01 11 34073939 34073939 T G CAPRIN1 Intron 0.33 TCGA-62-A470-01 11 49805519 49805519 C G RP11-707M1.1 RNA 0.42 TCGA-62-A470-01 11 55432967 55432967 G T OR4C6 Missense_Mutation p.G109W 0.34 deleterious_low_confidence(0.01) benign(0.043) TCGA-62-A470-01 11 55563539 55563539 T G OR5D14 Missense_Mutation p.F170V 0.15 deleterious(0) possibly_damaging(0.786) TCGA-62-A470-01 11 5602993 5602993 T A OR52B6 Missense_Mutation p.L296Q 0.38 deleterious(0) probably_damaging(1) TCGA-62-A470-01 11 64537876 64537876 G A SF1 Missense_Mutation p.P206S 0.31 deleterious(0) probably_damaging(1) TCGA-62-A470-01 11 64600133 64600133 G T CDC42BPG Missense_Mutation p.A983D 0.33 deleterious(0) probably_damaging(0.966) TCGA-62-A470-01 11 72554509 72554509 C A FCHSD2 Missense_Mutation p.M504I 0.11 deleterious(0.02) probably_damaging(0.996) TCGA-62-A470-01 12 104336420 104336420 T A HSP90B1 Missense_Mutation p.I497N 0.41 deleterious(0) probably_damaging(0.937) TCGA-62-A470-01 12 130935791 130935791 C A RIMBP2 Missense_Mutation p.K134N 0.11 tolerated(0.1) benign(0.008) TCGA-62-A470-01 12 22811992 22811992 A T ETNK1 Missense_Mutation p.H243L 0.26 tolerated(0.17) probably_damaging(0.999) TCGA-62-A470-01 12 56996626 56996626 G A BAZ2A Missense_Mutation p.R1101C 0.31 deleterious(0) possibly_damaging(0.621) TCGA-62-A470-01 12 5941723 5941723 G A ANO2 Missense_Mutation p.A223V 0.23 tolerated(0.06) benign(0.079) TCGA-62-A470-01 12 7175004 7175004 G A C1S Missense_Mutation p.S375N 0.15 tolerated(0.47) benign(0.013) TCGA-62-A470-01 13 28631552 28631552 C T FLT3 Missense_Mutation p.G139E 0.10 deleterious(0) probably_damaging(1) TCGA-62-A470-01 13 58206769 58206769 G T PCDH17 Missense_Mutation p.G30V 0.35 tolerated(0.05) possibly_damaging(0.481) TCGA-62-A470-01 14 102482349 102482349 C T DYNC1H1 Missense_Mutation p.R2467C 0.22 probably_damaging(0.985) TCGA-62-A470-01 14 107095337 107095337 A T IGHV4-61 Missense_Mutation p.V48D 0.05 deleterious(0) benign(0.248) TCGA-62-A470-01 14 20296499 20296499 A G OR4N2 Missense_Mutation p.M298V 0.18 tolerated(0.08) benign(0.007) TCGA-62-A470-01 14 23829812 23829812 C A EFS Missense_Mutation p.Q83H 0.18 tolerated(0.2) benign(0.003) TCGA-62-A470-01 14 42357036 42357036 C A LRFN5 Nonsense_Mutation p.S403* 0.15 TCGA-62-A470-01 15 25488582 25488582 A T SNORD115-40 5'Flank 0.33 TCGA-62-A470-01 15 28359842 28359842 C G HERC2 Missense_Mutation p.G4610A 0.21 probably_damaging(1) TCGA-62-A470-01 15 42003403 42003403 A G MGA Silent p.Q980Q 0.19 TCGA-62-A470-01 15 49882058 49882058 C T FAM227B Missense_Mutation p.M84I 0.15 deleterious(0.05) benign(0.097) TCGA-62-A470-01 15 54306851 54306851 G T UNC13C Missense_Mutation p.R584L 0.19 tolerated_low_confidence(0.12) benign(0.12) TCGA-62-A470-01 15 90168929 90168929 T A TICRR Missense_Mutation p.D1796E 0.24 tolerated(0.13) possibly_damaging(0.71) TCGA-62-A470-01 16 11260249 11260249 C T CLEC16A Silent p.F882F 0.22 TCGA-62-A470-01 16 30429202 30429202 C T ZNF771 Silent p.F156F 0.36 TCGA-62-A470-01 16 31105624 31105624 C A VKORC1 Intron 0.12 TCGA-62-A470-01 16 31503396 31503396 C G C16orf58 Missense_Mutation p.E415Q 0.08 tolerated(0.22) benign(0.009) TCGA-62-A470-01 16 4411441 4411441 C A CORO7 Silent p.T536T 0.42 TCGA-62-A470-01 16 830593 830593 G A MSLNL Silent p.H136H 0.18 TCGA-62-A470-01 16 88722811 88722811 G A MVD Intron 0.41 TCGA-62-A470-01 17 33464656 33464656 G C NLE1 Missense_Mutation p.L181V 0.18 tolerated(0.5) benign(0.043) TCGA-62-A470-01 17 4536185 4536185 T C ALOX15 Missense_Mutation p.E504G 0.15 deleterious(0.04) probably_damaging(0.944) TCGA-62-A470-01 17 52978236 52978236 G A TOM1L1 Missense_Mutation p.G4S 0.15 tolerated(0.1) probably_damaging(0.93) TCGA-62-A470-01 17 73559442 73559442 G A LLGL2 Missense_Mutation p.G242S 0.12 deleterious(0.05) benign(0.107) TCGA-62-A470-01 17 75212751 75212751 C A SEC14L1 3'UTR 0.13 TCGA-62-A470-01 17 79514392 79514392 G A C17orf70 Silent p.L572L 0.17 TCGA-62-A470-01 18 11752355 11752355 G A GNAL Intron 0.31 TCGA-62-A470-01 18 34465577 34465577 T A KIAA1328 Missense_Mutation p.F130L 0.21 deleterious(0) probably_damaging(0.997) TCGA-62-A470-01 18 56964066 56964066 T A CPLX4 Missense_Mutation p.E116V 0.16 deleterious(0) probably_damaging(0.979) TCGA-62-A470-01 18 56964067 56964067 C A CPLX4 Nonsense_Mutation p.E116* 0.16 TCGA-62-A470-01 18 72998479 72998479 G C TSHZ1 Missense_Mutation p.E328Q 0.35 tolerated(0.54) benign(0.147) TCGA-62-A470-01 18 905451 905451 G A ADCYAP1 Missense_Mutation p.V22I 0.27 tolerated(0.25) benign(0.035) TCGA-62-A470-01 19 10600473 10600479 ATCCTTC - KEAP1 Frame_Shift_Del p.R459Pfs*39 0.46 TCGA-62-A470-01 19 11508235 11508235 G A RGL3 Silent p.F601F 0.20 TCGA-62-A470-01 19 11545927 11545927 G A CCDC151 5'Flank 0.17 TCGA-62-A470-01 19 1207168 1207168 C T STK11 Nonsense_Mutation p.R86* 0.50 TCGA-62-A470-01 19 2291237 2291237 G A LINGO3 Missense_Mutation p.T180I 0.37 tolerated(0.05) possibly_damaging(0.825) TCGA-62-A470-01 19 3983180 3983181 - A EEF2 Frame_Shift_Ins p.D110* 0.22 TCGA-62-A470-01 19 4233283 4233283 C T EBI3 Missense_Mutation p.P120S 0.12 tolerated(0.07) benign(0.081) TCGA-62-A470-01 19 43093607 43093607 A G CEACAM8 Splice_Site p.X235_splice 0.58 TCGA-62-A470-01 19 43968551 43968551 G C LYPD3 Missense_Mutation p.P46R 0.23 tolerated(0.15) benign(0.132) TCGA-62-A470-01 19 51217189 51217189 C T SHANK1 Missense_Mutation p.A220T 0.29 benign(0.285) TCGA-62-A470-01 19 7083400 7083400 T C ZNF557 Missense_Mutation p.I313T 0.35 tolerated(0.13) possibly_damaging(0.702) TCGA-62-A470-01 1 101004789 101004789 G T GPR88 Silent p.A89A 0.18 TCGA-62-A470-01 1 116233765 116233765 C T VANGL1 Missense_Mutation p.A447V 0.09 deleterious(0.02) benign(0.342) TCGA-62-A470-01 1 153579934 153579934 G A S100A16 3'UTR 0.20 TCGA-62-A470-01 1 156913871 156913871 C T ARHGEF11 Missense_Mutation p.D1031N 0.06 deleterious(0) benign(0.242) TCGA-62-A470-01 1 161163924 161163924 T A ADAMTS4 Missense_Mutation p.Q450L 0.39 deleterious(0) probably_damaging(0.948) TCGA-62-A470-01 1 22176570 22176570 C T HSPG2 Nonsense_Mutation p.W2470* 0.20 TCGA-62-A470-01 1 240979667 240979667 T A RGS7 Missense_Mutation p.T245S 0.36 tolerated(0.64) benign(0.2) TCGA-62-A470-01 1 247654908 247654908 G A OR2W5 RNA 0.19 TCGA-62-A470-01 1 247751693 247751693 A C OR2G2 Missense_Mutation p.N11T 0.16 tolerated(0.27) benign(0.002) TCGA-62-A470-01 1 6246787 6246787 T C RPL22 Missense_Mutation p.E111G 0.15 deleterious(0.02) probably_damaging(0.981) TCGA-62-A470-01 1 74575184 74575184 T A LRRIQ3 Missense_Mutation p.E254V 0.22 deleterious(0.02) benign(0.093) TCGA-62-A470-01 20 33529526 33529526 C A GSS Missense_Mutation p.G200C 0.21 deleterious(0) probably_damaging(1) TCGA-62-A470-01 20 44404233 44404233 C T WFDC3 Missense_Mutation p.G168S 0.18 deleterious(0.01) probably_damaging(1) TCGA-62-A470-01 20 644766 644766 G T SCRT2 Missense_Mutation p.A158D 0.12 deleterious(0.05) benign(0.038) TCGA-62-A470-01 21 37617514 37617514 C T DOPEY2 Missense_Mutation p.P1079L 0.29 tolerated(0.45) benign(0.003) TCGA-62-A470-01 22 26164694 26164694 C G MYO18B Missense_Mutation p.Q271E 0.27 tolerated_low_confidence(0.37) benign(0.121) TCGA-62-A470-01 22 40711500 40711500 G T TNRC6B Missense_Mutation p.R1631L 0.46 deleterious(0.01) probably_damaging(0.988) TCGA-62-A470-01 22 47054118 47054118 C T GRAMD4 Silent p.N106N 0.21 TCGA-62-A470-01 2 125204491 125204491 G T CNTNAP5 Missense_Mutation p.D299Y 0.42 deleterious(0.05) probably_damaging(0.981) TCGA-62-A470-01 2 136505934 136505934 C G UBXN4 Silent p.T60T 0.14 TCGA-62-A470-01 2 166246021 166246021 G T SCN2A Missense_Mutation p.R1902L 0.38 deleterious(0) probably_damaging(0.999) TCGA-62-A470-01 2 179599242 179599242 T G TTN Silent p.P5103P 0.15 TCGA-62-A470-01 2 179604574 179604574 A T TTN Silent p.V4462V 0.07 TCGA-62-A470-01 2 214354753 214354753 C G SPAG16 Missense_Mutation p.P337A 0.08 tolerated(0.09) benign(0.006) TCGA-62-A470-01 2 219000466 219000466 C A CXCR2 Nonsense_Mutation p.Y314* 0.41 TCGA-62-A470-01 2 219507662 219507682 TGAGCCGCCGGTGCTGCTGCA - ZNF142 In_Frame_Del p.M1186_L1192del 0.24 TCGA-62-A470-01 2 225750510 225750510 G A DOCK10 Missense_Mutation p.R209C 0.24 deleterious(0) probably_damaging(0.985) TCGA-62-A470-01 2 27278976 27278976 C T AGBL5 Silent p.Y445Y 0.15 TCGA-62-A470-01 2 56420302 56420302 G T CCDC85A Missense_Mutation p.G323W 0.24 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-62-A470-01 2 8822344 8822344 G A ID2 Missense_Mutation p.D17N 0.39 deleterious(0) benign(0.046) TCGA-62-A470-01 2 89544411 89544411 G T IGKV2-30 Silent p.R71R 0.17 TCGA-62-A470-01 2 95481333 95481333 C A ANKRD20A8P RNA 0.15 TCGA-62-A470-01 2 99162498 99162498 A G INPP4A Missense_Mutation p.H339R 0.46 deleterious(0) probably_damaging(0.999) TCGA-62-A470-01 3 169710666 169710666 C T SEC62 Missense_Mutation p.R339W 0.14 deleterious(0) unknown(0) TCGA-62-A470-01 3 190967907 190967907 C A OSTN Silent p.G133G 0.17 TCGA-62-A470-01 3 41266104 41266104 G T CTNNB1 Missense_Mutation p.G34V 0.32 deleterious(0) probably_damaging(0.998) TCGA-62-A470-01 3 46399338 46399338 T C CCR2 Missense_Mutation p.V107A 0.63 tolerated(0.12) benign(0.05) TCGA-62-A470-01 3 67451168 67451168 C T SUCLG2 Silent p.V390V 0.26 TCGA-62-A470-01 3 7494379 7494379 C A GRM7 Missense_Mutation p.H420Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-62-A470-01 4 104065532 104065532 C A CENPE Nonsense_Mutation p.E1701* 0.21 TCGA-62-A470-01 4 122607464 122607464 G T ANXA5 Silent p.R25R 0.29 TCGA-62-A470-01 4 152022138 152022138 G T RPS3A Missense_Mutation p.D60Y 0.33 deleterious(0) possibly_damaging(0.877) TCGA-62-A470-01 4 153243996 153243996 C T FBXW7 3'UTR 0.33 TCGA-62-A470-01 4 47839976 47839976 G A CORIN 5'Flank 0.19 TCGA-62-A470-01 4 52945015 52945015 G T SPATA18 Missense_Mutation p.V379F 0.20 deleterious(0) benign(0.393) TCGA-62-A470-01 4 76927300 76927300 C A CXCL9 Splice_Site p.X64_splice 0.16 TCGA-62-A470-01 4 84377239 84377239 T C MRPS18C Silent p.A3A 0.49 TCGA-62-A470-01 4 973209 973209 C T SLC26A1 Silent p.E220E 0.28 TCGA-62-A470-01 5 102522022 102522022 G A PPIP5K2 Silent p.G1057G 0.57 TCGA-62-A470-01 5 108719110 108719110 G A PJA2 Missense_Mutation p.P9S 0.22 deleterious_low_confidence(0.03) benign(0.004) TCGA-62-A470-01 5 118861719 118861719 G C HSD17B4 Splice_Site p.X585_splice 0.09 TCGA-62-A470-01 5 176053493 176053493 G T SNCB Missense_Mutation p.A63D 0.61 deleterious(0) probably_damaging(0.998) TCGA-62-A470-01 5 40945415 40945415 C A C7 Nonsense_Mutation p.S228* 0.44 TCGA-62-A470-01 5 41201723 41201723 G T C6 Silent p.P79P 0.19 TCGA-62-A470-01 5 7709482 7709482 C T ADCY2 Silent p.N520N 0.30 TCGA-62-A470-01 5 90670825 90670826 TC - ARRDC3 Frame_Shift_Del p.E261Dfs*20 0.13 TCGA-62-A470-01 6 111312975 111312975 G A RPF2 Missense_Mutation p.D74N 0.27 tolerated(0.12) possibly_damaging(0.651) TCGA-62-A470-01 6 26368987 26368987 C T BTN3A2 Nonsense_Mutation p.R94* 0.35 TCGA-62-A470-01 6 42141509 42141509 G A GUCA1A Missense_Mutation p.S53N 0.30 tolerated(1) benign(0.001) TCGA-62-A470-01 6 85446454 85446454 G T TBX18 Silent p.T591T 0.60 TCGA-62-A470-01 6 90660232 90660232 G A BACH2 Silent p.D531D 0.53 TCGA-62-A470-01 7 117231994 117231994 C G CFTR Silent p.V591V 0.38 TCGA-62-A470-01 7 138602386 138602391 AGACTG - KIAA1549 In_Frame_Del p.Q661_S662del 0.18 TCGA-62-A470-01 7 149515171 149515171 C A SSPO RNA 0.24 TCGA-62-A470-01 7 20180565 20180565 G T MACC1 3'UTR 0.15 TCGA-62-A470-01 7 2953038 2953038 C T CARD11 Missense_Mutation p.A968T 0.21 tolerated(0.06) benign(0.043) TCGA-62-A470-01 7 38305160 38305160 C A TRGC1 Missense_Mutation p.V41F 0.40 deleterious(0) probably_damaging(0.991) TCGA-62-A470-01 7 45928336 45928336 C A IGFBP1 Missense_Mutation p.Q29K 0.22 tolerated(0.32) benign(0.079) TCGA-62-A470-01 8 144993135 144993135 C T PLEC Missense_Mutation p.M3755I 0.14 possibly_damaging(0.54) TCGA-62-A470-01 8 22548754 22548754 T C EGR3 Silent p.P132P 0.26 TCGA-62-A470-01 8 30704569 30704569 T A TEX15 Silent p.S655S 0.17 TCGA-62-A470-01 8 48973321 48973321 G A UBE2V2 Missense_Mutation p.R124H 0.13 tolerated(0.15) benign(0.01) TCGA-62-A470-01 8 49642286 49642286 T C EFCAB1 Missense_Mutation p.K155R 0.24 tolerated(0.07) possibly_damaging(0.649) TCGA-62-A470-01 8 62430195 62430195 C A ASPH Missense_Mutation p.G673V 0.27 deleterious(0) probably_damaging(0.998) TCGA-62-A470-01 8 98673319 98673325 AAGTGGC - MTDH Frame_Shift_Del p.E134Vfs*12 0.31 TCGA-62-A470-01 9 100845292 100845292 C T NANS Silent p.I345I 0.23 TCGA-62-A470-01 9 116837266 116837266 T C AMBP Missense_Mutation p.D104G 0.58 deleterious(0.05) benign(0.253) TCGA-62-A470-01 9 131107509 131107509 G T SLC27A4 Missense_Mutation p.L79F 0.59 deleterious(0) possibly_damaging(0.774) TCGA-62-A470-01 9 133967109 133967109 G C LAMC3 Missense_Mutation p.A1555P 0.59 deleterious(0.02) possibly_damaging(0.829) TCGA-62-A470-01 9 140414421 140414421 G A PNPLA7 Silent p.G344G 0.08 TCGA-62-A470-01 9 140508328 140508328 G A ARRDC1 Intron 0.10 TCGA-62-A470-01 9 6328954 6328954 C A TPD52L3 Missense_Mutation p.S120Y 0.13 deleterious(0) probably_damaging(0.963) TCGA-62-A470-01 9 6986621 6986621 C A KDM4C Silent p.I544I 0.40 TCGA-62-A470-01 9 93375522 93375522 G T DIRAS2 Nonsense_Mutation p.C196* 0.36 TCGA-62-A470-01 X 118893515 118893515 C A SOWAHD Silent p.G295G 0.60 TCGA-62-A470-01 X 135429204 135429204 A T GPR112 Silent p.S1113S 0.67 TCGA-62-A470-01 X 19626146 19626153 GCCTACGT - SH3KBP1 Frame_Shift_Del p.D303Vfs*16 0.23 TCGA-62-A470-01 X 5811619 5811619 G T NLGN4X Missense_Mutation p.P564T 0.68 tolerated(0.17) probably_damaging(0.996) TCGA-62-A470-01 X 8555903 8555903 G A KAL1 Nonsense_Mutation p.Q220* 0.60 TCGA-62-A470-01 Y 4924871 4924871 A T PCDH11Y Missense_Mutation p.R3W 0.29 deleterious_low_confidence(0.04) possibly_damaging(0.827) TCGA-62-A471-01 10 116055934 116055934 T C AFAP1L2 Intron 0.43 TCGA-62-A471-01 10 32856604 32856604 G C CCDC7 Missense_Mutation p.E402Q 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-62-A471-01 10 43088981 43088981 C G ZNF33B Missense_Mutation p.E473Q 0.42 tolerated(0.14) benign(0.008) TCGA-62-A471-01 10 74701039 74701039 A C PLA2G12B Missense_Mutation p.C118W 0.35 deleterious(0) probably_damaging(1) TCGA-62-A471-01 10 98118916 98118916 C A OPALIN 5'UTR 0.40 TCGA-62-A471-01 10 98763931 98763931 G A SLIT1 Silent p.A1253A 0.28 TCGA-62-A471-01 11 111839234 111839234 C G DIXDC1 Intron 0.50 TCGA-62-A471-01 11 123810602 123810602 C T OR4D5 Silent p.S93S 0.38 TCGA-62-A471-01 11 133805952 133805952 G A IGSF9B Nonsense_Mutation p.Q273* 0.25 TCGA-62-A471-01 11 58126243 58126243 G C OR5B17 Missense_Mutation p.F100L 0.48 deleterious_low_confidence(0.01) benign(0.398) TCGA-62-A471-01 11 65272803 65272803 C A MALAT1 RNA 0.10 TCGA-62-A471-01 11 67219685 67219685 C T GPR152 Missense_Mutation p.E171K 0.19 tolerated(0.22) probably_damaging(0.999) TCGA-62-A471-01 11 67789255 67789255 G A ALDH3B1 Silent p.Q287Q 0.12 TCGA-62-A471-01 11 67795493 67795493 G A ALDH3B1 3'UTR 0.23 TCGA-62-A471-01 11 70007391 70007391 C T ANO1 Missense_Mutation p.A568V 0.09 deleterious(0) probably_damaging(1) TCGA-62-A471-01 11 71726241 71726241 G A NUMA1 Nonsense_Mutation p.R770* 0.30 TCGA-62-A471-01 11 82643010 82643010 A G C11orf82 Silent p.S210S 0.39 TCGA-62-A471-01 12 107236557 107236557 C T RIC8B Missense_Mutation p.H343Y 0.26 deleterious(0.02) benign(0.13) TCGA-62-A471-01 12 107391777 107391777 C A CRY1 Missense_Mutation p.C402F 0.27 deleterious(0) probably_damaging(0.949) TCGA-62-A471-01 12 112237742 112237742 C A ALDH2 Missense_Mutation p.F427L 0.36 deleterious(0.01) probably_damaging(1) TCGA-62-A471-01 12 123200545 123200545 C G HCAR3 Missense_Mutation p.S247T 0.28 tolerated(0.07) probably_damaging(0.998) TCGA-62-A471-01 12 52946691 52946691 G T KRT71 Silent p.L57L 0.27 TCGA-62-A471-01 12 53693188 53693188 G C PFDN5 3'UTR 0.17 TCGA-62-A471-01 12 56495462 56495462 G A ERBB3 Missense_Mutation p.E1218K 0.32 tolerated(0.08) possibly_damaging(0.549) TCGA-62-A471-01 12 6635621 6635621 C A NCAPD2 Silent p.V858V 0.28 TCGA-62-A471-01 12 6637215 6637215 C T NCAPD2 Missense_Mutation p.S1034F 0.28 deleterious(0.02) benign(0.092) TCGA-62-A471-01 12 6637370 6637370 C T NCAPD2 Silent p.L1059L 0.26 TCGA-62-A471-01 12 70049106 70049106 C G BEST3 Missense_Mutation p.E530Q 0.31 tolerated_low_confidence(0.17) benign(0.16) TCGA-62-A471-01 12 7864204 7864204 G A DPPA3 Missense_Mutation p.G13E 0.25 tolerated(1) benign(0) TCGA-62-A471-01 12 82746800 82746800 G A CCDC59 3'UTR 0.50 TCGA-62-A471-01 13 49852582 49852582 G A CDADC1 Missense_Mutation p.D383N 0.20 tolerated(0.17) probably_damaging(0.933) TCGA-62-A471-01 14 32563294 32563294 G A ARHGAP5 Missense_Mutation p.R1140K 0.36 tolerated(0.6) benign(0.041) TCGA-62-A471-01 14 50877254 50877254 G A CDKL1 RNA 0.05 TCGA-62-A471-01 14 60193861 60193861 C T RTN1 Missense_Mutation p.R514Q 0.27 tolerated(0.5) benign(0.001) TCGA-62-A471-01 14 74976824 74976824 C T LTBP2 Missense_Mutation p.E1041K 0.47 tolerated(0.1) benign(0.032) TCGA-62-A471-01 14 88478137 88478137 C G GPR65 Missense_Mutation p.Q316E 0.41 tolerated(0.7) benign(0.002) TCGA-62-A471-01 15 101528870 101528870 G C LRRK1 Missense_Mutation p.W155C 0.31 tolerated(0.06) possibly_damaging(0.464) TCGA-62-A471-01 15 22853733 22853733 G A TUBGCP5 Splice_Site p.X458_splice 0.39 TCGA-62-A471-01 15 74173755 74173755 C - TBC1D21 Frame_Shift_Del p.I27Lfs*36 0.27 TCGA-62-A471-01 16 15023205 15023205 C T RP11-958N24.1 RNA 0.31 TCGA-62-A471-01 16 2120500 2120500 A G TSC2 Missense_Mutation p.Y587C 0.13 deleterious(0) possibly_damaging(0.739) TCGA-62-A471-01 16 5083366 5083366 C T NAGPA Silent p.G150G 0.21 TCGA-62-A471-01 16 57063721 57063721 G C NLRC5 Silent p.L760L 0.12 TCGA-62-A471-01 16 72831616 72831616 C G ZFHX3 Silent p.V1655V 0.12 TCGA-62-A471-01 17 11786923 11786923 G A DNAH9 Silent p.Q3609Q 0.51 TCGA-62-A471-01 17 28296356 28296356 G C EFCAB5 Missense_Mutation p.K246N 0.23 deleterious(0) probably_damaging(1) TCGA-62-A471-01 17 38610236 38610236 A G IGFBP4 Silent p.S188S 0.28 TCGA-62-A471-01 17 40384039 40384039 T G STAT5B Missense_Mutation p.Q36P 0.29 tolerated(0.22) probably_damaging(0.988) TCGA-62-A471-01 17 56438227 56438227 G C RNF43 Missense_Mutation p.R256G 0.29 tolerated(0.08) benign(0.012) TCGA-62-A471-01 17 56557512 56557512 G A HSF5 Missense_Mutation p.R223W 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-62-A471-01 17 63198131 63198131 G A RGS9 Missense_Mutation p.E333K 0.25 deleterious(0) probably_damaging(0.987) TCGA-62-A471-01 17 65989227 65989227 G A C17orf58 Silent p.F12F 0.33 TCGA-62-A471-01 17 73487524 73487524 C T KIAA0195 Silent p.F458F 0.35 TCGA-62-A471-01 17 73489054 73489054 C T KIAA0195 Silent p.L653L 0.23 TCGA-62-A471-01 17 7577574 7577574 T C TP53 Missense_Mutation p.Y236C 0.45 deleterious(0) probably_damaging(0.996) TCGA-62-A471-01 17 76968021 76968021 T C LGALS3BP Silent p.Q465Q 0.36 TCGA-62-A471-01 19 10893794 10893794 C G DNM2 Missense_Mutation p.Q283E 0.39 deleterious(0.01) benign(0.226) TCGA-62-A471-01 19 16870183 16870183 A G NWD1 Silent p.G639G 0.50 TCGA-62-A471-01 19 2413747 2413747 T G TMPRSS9 Missense_Mutation p.F401C 0.22 deleterious(0) probably_damaging(0.992) TCGA-62-A471-01 19 35842853 35842853 C T FFAR1 Silent p.L133L 0.12 TCGA-62-A471-01 19 36503936 36503936 T C ALKBH6 Missense_Mutation p.Y65C 0.38 tolerated(0.06) benign(0.077) TCGA-62-A471-01 19 42224947 42224947 C G CEACAM5 Missense_Mutation p.S626C 0.47 deleterious(0) probably_damaging(0.984) TCGA-62-A471-01 19 50474929 50474929 C A SIGLEC16 RNA 0.35 TCGA-62-A471-01 19 55399744 55399744 G T FCAR Intron 0.70 TCGA-62-A471-01 19 8161800 8161800 C A FBN3 Missense_Mutation p.R1793L 0.42 tolerated(0.21) benign(0.015) TCGA-62-A471-01 1 145580237 145580237 G T PIAS3 Missense_Mutation p.R240L 0.14 deleterious(0) probably_damaging(1) TCGA-62-A471-01 1 197101472 197101472 C T ASPM Silent p.Q810Q 0.12 TCGA-62-A471-01 1 212273710 212273710 C G DTL Missense_Mutation p.L460V 0.05 deleterious(0.01) possibly_damaging(0.802) TCGA-62-A471-01 1 215793728 215793728 A G KCTD3 Missense_Mutation p.K739R 0.08 tolerated_low_confidence(0.31) benign(0.004) TCGA-62-A471-01 1 233394357 233394357 C A PCNXL2 Silent p.A417A 0.54 TCGA-62-A471-01 1 237057670 237057670 C G MTR Missense_Mutation p.S1073C 0.13 deleterious(0.02) benign(0.345) TCGA-62-A471-01 1 23848400 23848400 G A E2F2 Silent p.I169I 0.18 TCGA-62-A471-01 1 33402416 33402416 G C RNF19B Silent p.A730A 0.08 TCGA-62-A471-01 1 74818999 74818999 C G FPGT-TNNI3K Missense_Mutation p.Q442E 0.24 tolerated(0.06) probably_damaging(0.979) TCGA-62-A471-01 20 3673252 3673252 G A SIGLEC1 Missense_Mutation p.R1316W 0.21 deleterious(0) probably_damaging(0.977) TCGA-62-A471-01 20 42232421 42232421 C G IFT52 Missense_Mutation p.L77V 0.45 tolerated(0.45) benign(0.07) TCGA-62-A471-01 20 948618 948618 G A RSPO4 Silent p.R81R 0.49 TCGA-62-A471-01 21 11097633 11097633 A G BAGE2 RNA 0.06 TCGA-62-A471-01 21 31859601 31859601 C A KRTAP19-2 Nonsense_Mutation p.G23* 0.17 TCGA-62-A471-01 21 37584323 37584323 C T DOPEY2 Missense_Mutation p.L278F 0.22 deleterious(0.01) probably_damaging(0.936) TCGA-62-A471-01 21 45217310 45217310 G A RRP1 Missense_Mutation p.E144K 0.25 tolerated(0.58) benign(0.09) TCGA-62-A471-01 22 20759667 20759667 A - ZNF74 Frame_Shift_Del p.E115Dfs*4 0.26 TCGA-62-A471-01 2 106690449 106690449 G A C2orf40 Missense_Mutation p.E79K 0.05 tolerated(0.11) benign(0.369) TCGA-62-A471-01 2 125555862 125555862 C T CNTNAP5 Missense_Mutation p.S1060F 0.36 tolerated(0.39) benign(0.012) TCGA-62-A471-01 2 160585554 160585554 G C MARCH7 Missense_Mutation p.R7S 0.13 deleterious(0) probably_damaging(0.992) TCGA-62-A471-01 2 171713609 171713609 G A GAD1 Missense_Mutation p.E499K 0.18 tolerated(0.14) benign(0.262) TCGA-62-A471-01 2 175612745 175612745 T C CHRNA1 3'UTR 0.16 TCGA-62-A471-01 2 178096180 178096180 G A NFE2L2 Missense_Mutation p.A384V 0.40 tolerated(0.13) benign(0.008) TCGA-62-A471-01 2 179579020 179579020 G A TTN Silent p.L8827L 0.11 TCGA-62-A471-01 2 192279318 192279318 G C MYO1B Missense_Mutation p.E1028Q 0.10 tolerated(0.57) possibly_damaging(0.653) TCGA-62-A471-01 2 219870935 219870935 G T CCDC108 Missense_Mutation p.P1577H 0.06 deleterious(0) probably_damaging(1) TCGA-62-A471-01 2 87042598 87042598 G C CD8B 3'Flank 0.08 TCGA-62-A471-01 3 107881300 107881300 C T IFT57 3'UTR 0.14 TCGA-62-A471-01 3 129168748 129168748 C G IFT122 Missense_Mutation p.Q26E 0.06 deleterious(0.02) benign(0.23) TCGA-62-A471-01 3 164709969 164709969 T C SI Missense_Mutation p.H1660R 0.37 tolerated(0.06) probably_damaging(0.958) TCGA-62-A471-01 3 183226083 183226083 C T KLHL6 Missense_Mutation p.D225N 0.07 deleterious(0.01) probably_damaging(1) TCGA-62-A471-01 3 185181348 185181348 G C MAP3K13 Missense_Mutation p.R430T 0.15 deleterious(0) possibly_damaging(0.501) TCGA-62-A471-01 3 185181373 185181373 G A MAP3K13 Silent p.E438E 0.19 TCGA-62-A471-01 3 196387429 196387429 C T NRROS Silent p.L305L 0.41 TCGA-62-A471-01 3 21792538 21792538 G A ZNF385D 5'UTR 0.42 TCGA-62-A471-01 3 53736702 53736702 C T CACNA1D Missense_Mutation p.R419W 0.36 deleterious(0) probably_damaging(0.999) TCGA-62-A471-01 3 89498522 89498522 G C EPHA3 Missense_Mutation p.D832H 0.43 deleterious(0) probably_damaging(0.999) TCGA-62-A471-01 3 89499342 89499342 G A EPHA3 Missense_Mutation p.D838N 0.49 tolerated(0.14) benign(0.378) TCGA-62-A471-01 4 155155736 155155736 G A DCHS2 Silent p.I2901I 0.30 TCGA-62-A471-01 4 183676138 183676138 G T TENM3 Missense_Mutation p.D1540Y 0.30 deleterious(0) benign(0.099) TCGA-62-A471-01 4 44177200 44177200 A G KCTD8 Silent p.D343D 0.24 TCGA-62-A471-01 4 53728631 53728631 C T RASL11B 5'UTR 0.48 TCGA-62-A471-01 4 71660566 71660566 C T RUFY3 Silent p.D504D 0.21 TCGA-62-A471-01 4 8089921 8089921 G A ABLIM2 Silent p.S143S 0.50 TCGA-62-A471-01 5 140255643 140255643 C A PCDHA12 Missense_Mutation p.L196I 0.53 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-62-A471-01 5 176004449 176004449 C T CDHR2 Missense_Mutation p.A415V 0.44 deleterious(0) benign(0.35) TCGA-62-A471-01 5 178413884 178413884 G A GRM6 Silent p.G485G 0.38 TCGA-62-A471-01 5 179263610 179263610 C T SQSTM1 3'UTR 0.37 TCGA-62-A471-01 5 179263686 179263686 C G SQSTM1 3'UTR 0.48 TCGA-62-A471-01 5 23527310 23527310 T A PRDM9 Missense_Mutation p.S705T 0.11 tolerated(0.1) probably_damaging(0.958) TCGA-62-A471-01 5 24535346 24535346 C T CDH10 Missense_Mutation p.R230K 0.13 tolerated(1) possibly_damaging(0.623) TCGA-62-A471-01 5 31448657 31448657 G A DROSHA Missense_Mutation p.S960L 0.22 deleterious(0) probably_damaging(0.921) TCGA-62-A471-01 5 35921144 35921144 C T CAPSL Missense_Mutation p.E27K 0.21 deleterious(0) benign(0.217) TCGA-62-A471-01 5 73931477 73931477 C T ENC1 Silent p.Q278Q 0.35 TCGA-62-A471-01 6 10529691 10529691 C T GCNT2 Missense_Mutation p.P183S 0.27 tolerated(0.09) benign(0.178) TCGA-62-A471-01 6 117047683 117047683 C G KPNA5 Missense_Mutation p.P384R 0.37 deleterious(0.03) benign(0.024) TCGA-62-A471-01 6 121768910 121768910 G A GJA1 Missense_Mutation p.S306N 0.17 tolerated(0.4) benign(0.001) TCGA-62-A471-01 6 26032181 26032181 C T HIST1H3B Silent p.V36V 0.30 TCGA-62-A471-01 6 26043672 26043672 C G HIST1H2BB Missense_Mutation p.E72Q 0.33 deleterious_low_confidence(0.02) benign(0.018) TCGA-62-A471-01 6 26045818 26045818 G A HIST1H3C Silent p.E60E 0.26 TCGA-62-A471-01 6 31689402 31689402 C T LY6G6C Intron 0.10 TCGA-62-A471-01 6 85446851 85446851 C G TBX18 Missense_Mutation p.G459A 0.29 tolerated(0.3) benign(0.104) TCGA-62-A471-01 7 106898816 106898816 C G COG5 Missense_Mutation p.G561R 0.35 deleterious(0) probably_damaging(0.964) TCGA-62-A471-01 7 107423731 107423731 G A SLC26A3 Silent p.I346I 0.16 TCGA-62-A471-01 7 149318371 149318371 T C ZNF767 RNA 0.30 TCGA-62-A471-01 7 158590630 158590630 G A ESYT2 Intron 0.26 TCGA-62-A471-01 7 2472240 2472240 G A CHST12 5'UTR 0.29 TCGA-62-A471-01 7 7278152 7278152 G C C1GALT1 Missense_Mutation p.D163H 0.39 deleterious(0) probably_damaging(1) TCGA-62-A471-01 7 99717263 99717263 C T CNPY4 5'UTR 0.10 TCGA-62-A471-01 8 102570864 102570864 A T GRHL2 Missense_Mutation p.M168L 0.30 tolerated(0.7) benign(0.001) TCGA-62-A471-01 8 11607683 11607683 C T GATA4 Missense_Mutation p.R283C 0.14 deleterious(0) probably_damaging(1) TCGA-62-A471-01 8 124982337 124982337 C A FER1L6 Silent p.S149S 0.46 TCGA-62-A471-01 8 17486207 17486207 G C PDGFRL Missense_Mutation p.E239D 0.11 tolerated(1) benign(0.001) TCGA-62-A471-01 8 25220650 25220650 C T DOCK5 Nonsense_Mutation p.Q1013* 0.24 TCGA-62-A471-01 8 3265645 3265645 G A CSMD1 Missense_Mutation p.S616L 0.14 benign(0.146) TCGA-62-A471-01 8 62578140 62578140 G C ASPH Intron 0.24 TCGA-62-A471-01 8 89198748 89198748 C T MMP16 Missense_Mutation p.A121T 0.45 deleterious(0.01) probably_damaging(0.931) TCGA-62-A471-01 9 115336635 115336635 C G KIAA1958 Missense_Mutation p.S92C 0.11 deleterious(0.01) probably_damaging(0.926) TCGA-62-A471-01 9 123776208 123776208 C T C5 Missense_Mutation p.V734I 0.07 tolerated(0.5) benign(0.001) TCGA-62-A471-01 9 2643959 2643959 C T VLDLR Missense_Mutation p.H356Y 0.43 deleterious(0.03) benign(0) TCGA-62-A471-01 X 119739990 119739990 G A MCTS1 Missense_Mutation p.R75K 0.42 tolerated(0.44) benign(0.016) TCGA-62-A471-01 X 131212272 131212272 C T FRMD7 Silent p.Q591Q 0.06 TCGA-62-A471-01 X 154292442 154292442 C T MTCP1 3'UTR 0.44 TCGA-62-A471-01 X 77912774 77912774 G A ZCCHC5 Silent p.L382L 0.11 TCGA-62-A471-01 X 85218783 85218783 T C CHM Missense_Mutation p.S197G 0.09 tolerated(0.51) benign(0) TCGA-62-A472-01 10 102748931 102748949 GCACGAAAACTGAACCCCA - C10orf2 Frame_Shift_Del p.A322Nfs*19 0.27 TCGA-62-A472-01 10 43318602 43318602 G A BMS1 Missense_Mutation p.E1057K 0.21 deleterious(0) benign(0.1) TCGA-62-A472-01 10 45430219 45430219 C T TMEM72 Silent p.S155S 0.20 TCGA-62-A472-01 10 46322084 46322084 T G AGAP4 Missense_Mutation p.Q424P 0.32 deleterious(0) possibly_damaging(0.582) TCGA-62-A472-01 10 5435746 5435746 T A TUBAL3 Nonsense_Mutation p.K359* 0.34 TCGA-62-A472-01 11 102595533 102595533 G T MMP8 Silent p.S18S 0.12 TCGA-62-A472-01 11 1031991 1031991 C T MUC6 Missense_Mutation p.V60M 0.27 unknown(0) TCGA-62-A472-01 11 105795454 105795454 C A GRIA4 Silent p.S602S 0.21 TCGA-62-A472-01 11 17408816 17408816 G A KCNJ11 Silent p.L275L 0.14 TCGA-62-A472-01 11 46722578 46722578 G A ZNF408 5'UTR 0.13 TCGA-62-A472-01 11 46722580 46722580 G A ZNF408 5'UTR 0.13 TCGA-62-A472-01 11 4903803 4903803 G A OR51T1 Missense_Mutation p.R252H 0.10 tolerated(0.31) benign(0.123) TCGA-62-A472-01 11 55340368 55340368 G A OR4C16 Missense_Mutation p.M255I 0.36 tolerated(1) benign(0) TCGA-62-A472-01 11 85584274 85584274 C T CCDC83 Missense_Mutation p.A39V 0.18 tolerated(0.08) benign(0.098) TCGA-62-A472-01 12 114804148 114804148 G T TBX5 Silent p.A268A 0.13 TCGA-62-A472-01 12 16109965 16109965 C T DERA Nonsense_Mutation p.Q43* 0.12 TCGA-62-A472-01 12 4461562 4461563 - A C12orf5 Frame_Shift_Ins p.N175Kfs*5 0.13 TCGA-62-A472-01 12 49445942 49445942 T C KMT2D Silent p.E508E 0.33 TCGA-62-A472-01 12 50388254 50388254 C T RACGAP1 Missense_Mutation p.M361I 0.36 deleterious(0.02) possibly_damaging(0.687) TCGA-62-A472-01 13 113965162 113965162 A G LAMP1 Missense_Mutation p.N181S 0.38 tolerated(0.21) benign(0.052) TCGA-62-A472-01 14 75022276 75022276 C A LTBP2 Silent p.P317P 0.22 TCGA-62-A472-01 15 43816667 43816667 C G MAP1A Missense_Mutation p.P999R 0.32 probably_damaging(0.929) TCGA-62-A472-01 15 84527525 84527525 A C ADAMTSL3 Missense_Mutation p.E245D 0.37 tolerated(0.96) benign(0.063) TCGA-62-A472-01 16 709087 709087 G A WDR90 Missense_Mutation p.D1005N 0.44 tolerated(0.45) benign(0) TCGA-62-A472-01 17 42429456 42429456 G A GRN Missense_Mutation p.R418Q 0.33 tolerated(0.23) benign(0.015) TCGA-62-A472-01 17 7578192 7578192 G - TP53 Frame_Shift_Del p.Y220Mfs*27 0.29 TCGA-62-A472-01 17 76063980 76063980 C A TNRC6C Missense_Mutation p.N915K 0.32 tolerated(0.13) benign(0.232) TCGA-62-A472-01 18 57106778 57106778 A C CCBE1 Silent p.S316S 0.37 TCGA-62-A472-01 19 43690554 43690554 C T PSG5 Missense_Mutation p.G2R 0.26 tolerated(0.2) probably_damaging(0.999) TCGA-62-A472-01 19 51670987 51670987 C T CTD-3187F8.14 Intron 0.18 TCGA-62-A472-01 1 114511088 114511088 C T HIPK1 Silent p.S863S 0.17 TCGA-62-A472-01 1 150208140 150208140 C T ANP32E 5'UTR 0.50 TCGA-62-A472-01 1 153902776 153902776 G C DENND4B Missense_Mutation p.C1496W 0.33 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-62-A472-01 1 185278149 185278149 A G IVNS1ABP Silent p.Y89Y 0.22 TCGA-62-A472-01 1 44085379 44085379 C T PTPRF Missense_Mutation p.S1654F 0.12 deleterious(0) possibly_damaging(0.645) TCGA-62-A472-01 1 44085382 44085382 G T PTPRF Missense_Mutation p.R1655L 0.13 deleterious(0) possibly_damaging(0.566) TCGA-62-A472-01 1 53237070 53237070 A T ZYG11B Missense_Mutation p.D192V 0.21 deleterious(0) possibly_damaging(0.858) TCGA-62-A472-01 20 34067214 34067214 C T CEP250 Silent p.D751D 0.16 TCGA-62-A472-01 21 43557723 43557723 A G UMODL1 Missense_Mutation p.Y1445C 0.23 deleterious(0.01) possibly_damaging(0.885) TCGA-62-A472-01 22 17072056 17072056 T A CCT8L2 Missense_Mutation p.D462V 0.38 deleterious(0.05) benign(0.171) TCGA-62-A472-01 22 40054211 40054211 T G CACNA1I Missense_Mutation p.F683V 0.16 deleterious(0) possibly_damaging(0.637) TCGA-62-A472-01 2 177034070 177034070 G A HOXD3 Silent p.L76L 0.18 TCGA-62-A472-01 2 65473767 65473767 A G ACTR2 Missense_Mutation p.D95G 0.25 deleterious(0.03) possibly_damaging(0.492) TCGA-62-A472-01 2 69379389 69379389 G T ANTXR1 Missense_Mutation p.C347F 0.19 deleterious(0) probably_damaging(0.985) TCGA-62-A472-01 2 86684157 86684157 G A KDM3A Missense_Mutation p.G269E 0.35 tolerated(0.41) benign(0.263) TCGA-62-A472-01 2 97520082 97520082 G A ANKRD39 Missense_Mutation p.T66I 0.17 deleterious(0) possibly_damaging(0.876) TCGA-62-A472-01 3 120401091 120401091 A C HGD 5'UTR 0.41 TCGA-62-A472-01 3 194790638 194790638 C A XXYLT1 Missense_Mutation p.D330Y 0.35 deleterious(0) probably_damaging(1) TCGA-62-A472-01 3 50425032 50425032 G - CACNA2D2 Frame_Shift_Del p.I159Mfs*29 0.18 TCGA-62-A472-01 4 134084225 134084225 G T PCDH10 Missense_Mutation p.R964L 0.10 tolerated(0.25) probably_damaging(0.994) TCGA-62-A472-01 4 82092953 82092953 G A PRKG2 Nonsense_Mutation p.R212* 0.27 TCGA-62-A472-01 4 94693534 94693534 C G GRID2 Missense_Mutation p.P970R 0.07 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-62-A472-01 5 142513603 142513603 C T ARHGAP26 Silent p.D590D 0.31 TCGA-62-A472-01 5 156672923 156672923 C A ITK Missense_Mutation p.T516K 0.26 tolerated(0.5) benign(0.003) TCGA-62-A472-01 5 205656 205656 C A CCDC127 Missense_Mutation p.R180L 0.15 deleterious(0) probably_damaging(0.91) TCGA-62-A472-01 5 33951536 33951536 G A SLC45A2 Intron 0.19 TCGA-62-A472-01 5 75906931 75906931 A G IQGAP2 Missense_Mutation p.N482D 0.22 tolerated(0.36) benign(0.001) TCGA-62-A472-01 6 116837032 116837032 T A FAM26E Silent p.S270S 0.26 TCGA-62-A472-01 6 25972214 25972214 C A TRIM38 Missense_Mutation p.L209M 0.30 deleterious(0) probably_damaging(0.94) TCGA-62-A472-01 6 26158709 26158709 G T HIST1H2BD Silent p.P104P 0.41 TCGA-62-A472-01 6 26158710 26158710 G C HIST1H2BD Missense_Mutation p.G105R 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.504) TCGA-62-A472-01 6 5368810 5368810 G T FARS2 Missense_Mutation p.G3C 0.29 tolerated_low_confidence(1) benign(0) TCGA-62-A472-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.43 deleterious(0) probably_damaging(0.967) TCGA-62-A472-01 7 142139555 142139555 A T TRBV7-6 Missense_Mutation p.S24T 0.23 tolerated(0.9) benign(0.009) TCGA-62-A472-01 7 143807213 143807213 A T OR2A2 Missense_Mutation p.I180F 0.34 deleterious(0.01) benign(0.444) TCGA-62-A472-01 7 144380067 144380067 A T TPK1 Silent p.L40L 0.21 TCGA-62-A472-01 7 57188446 57188446 A G ZNF479 Missense_Mutation p.S226P 0.13 deleterious(0.01) possibly_damaging(0.81) TCGA-62-A472-01 7 91503060 91503060 G T MTERF Silent p.R350R 0.34 TCGA-62-A472-01 8 53084966 53084966 C A ST18 Missense_Mutation p.S152I 0.26 deleterious(0) possibly_damaging(0.563) TCGA-62-A472-01 8 75898348 75898348 G - CRISPLD1 Frame_Shift_Del p.D43Mfs*6 0.24 TCGA-62-A472-01 8 99441470 99441476 GCAACTT - KCNS2 Frame_Shift_Del p.Q422Rfs*13 0.17 TCGA-62-A472-01 9 125330548 125330548 G C OR1L8 Missense_Mutation p.T70S 0.20 tolerated(0.08) benign(0.15) TCGA-62-A472-01 9 139110572 139110572 C T QSOX2 Missense_Mutation p.G347R 0.32 deleterious(0) probably_damaging(0.998) TCGA-62-A472-01 9 16436509 16436509 A C BNC2 Silent p.S561S 0.41 TCGA-62-A472-01 9 70177163 70177163 G A FOXD4L5 Missense_Mutation p.S274L 0.21 deleterious(0) benign(0.238) TCGA-62-A472-01 9 97062651 97062651 T A ZNF169 Missense_Mutation p.F271I 0.25 deleterious(0) probably_damaging(1) TCGA-62-A472-01 X 130416701 130416701 G T IGSF1 Silent p.P321P 0.52 TCGA-62-A472-01 X 47028898 47028898 G T RBM10 Splice_Site p.X67_splice 0.60 TCGA-64-1676-01 10 102509514 102509514 G A PAX2 Missense_Mutation p.G19S 0.30 deleterious(0) probably_damaging(1) TCGA-64-1676-01 10 103291028 103291028 G T BTRC Missense_Mutation p.G260W 0.21 tolerated(0.06) possibly_damaging(0.473) TCGA-64-1676-01 10 106960961 106960961 A G SORCS3 Silent p.S737S 0.31 TCGA-64-1676-01 10 116930936 116930936 G A ATRNL1 Missense_Mutation p.E412K 0.30 tolerated(0.06) probably_damaging(0.91) TCGA-64-1676-01 10 118896117 118896117 G A VAX1 Missense_Mutation p.R99W 0.14 deleterious(0) unknown(0) TCGA-64-1676-01 10 125528162 125528162 C A CPXM2 Silent p.V393V 0.27 TCGA-64-1676-01 10 126694436 126694436 T A CTBP2 Intron 0.34 TCGA-64-1676-01 10 134040330 134040330 C A STK32C Missense_Mutation p.D205Y 0.24 deleterious(0) probably_damaging(0.992) TCGA-64-1676-01 10 15628598 15628598 T A ITGA8 Missense_Mutation p.Q786L 0.21 tolerated(0.06) probably_damaging(0.924) TCGA-64-1676-01 10 24889599 24889599 C A ARHGAP21 Missense_Mutation p.Q1036H 0.15 deleterious(0) probably_damaging(0.999) TCGA-64-1676-01 10 30986327 30986327 G C SVILP1 RNA 0.15 TCGA-64-1676-01 10 45938974 45938974 G A ALOX5 Missense_Mutation p.R521H 0.11 tolerated(0.59) benign(0.375) TCGA-64-1676-01 10 47087824 47087824 G A NPY4R Silent p.E347E 0.12 TCGA-64-1676-01 10 51821252 51821252 C T RP11-324H6.5 RNA 0.32 TCGA-64-1676-01 10 51978271 51978271 T A ASAH2 Missense_Mutation p.Q338L 0.45 tolerated(0.05) possibly_damaging(0.456) TCGA-64-1676-01 10 6157491 6157491 G C RBM17 Missense_Mutation p.R393T 0.18 tolerated(0.2) possibly_damaging(0.667) TCGA-64-1676-01 10 64575716 64575716 A G EGR2 Missense_Mutation p.I25T 0.35 deleterious(0.02) benign(0.227) TCGA-64-1676-01 10 7614178 7614178 C A ITIH5 Intron 0.44 TCGA-64-1676-01 10 79784770 79784770 C A POLR3A Missense_Mutation p.C150F 0.35 deleterious(0) probably_damaging(0.988) TCGA-64-1676-01 10 8105983 8105983 C A GATA3 Missense_Mutation p.A269E 0.20 deleterious(0) benign(0.361) TCGA-64-1676-01 11 103128358 103128358 C T DYNC2H1 Silent p.L3502L 0.15 TCGA-64-1676-01 11 103908255 103908255 C A DDI1 Silent p.P235P 0.21 TCGA-64-1676-01 11 107424653 107424661 ACTACCATG GCT ALKBH8 In_Frame_Del p.M138_V140delinsA 0.23 TCGA-64-1676-01 11 112832189 112832189 G A NCAM1 Missense_Mutation p.R11K 0.35 unknown(0) TCGA-64-1676-01 11 113102898 113102898 C A NCAM1 Missense_Mutation p.P465Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-64-1676-01 11 119207086 119207086 C T RNF26 Silent p.C418C 0.20 TCGA-64-1676-01 11 11985955 11985955 C T DKK3 3'UTR 0.33 TCGA-64-1676-01 11 119996441 119996441 C A TRIM29 Missense_Mutation p.D431Y 0.21 deleterious(0) possibly_damaging(0.75) TCGA-64-1676-01 11 123777159 123777159 C T OR8D4 Silent p.S7S 0.22 TCGA-64-1676-01 11 123811224 123811224 C T OR4D5 Silent p.L301L 0.17 TCGA-64-1676-01 11 123848164 123848164 G A OR10S1 Missense_Mutation p.L79F 0.21 deleterious(0) probably_damaging(0.998) TCGA-64-1676-01 11 123900722 123900722 C A OR10G8 Nonsense_Mutation p.Y131* 0.21 TCGA-64-1676-01 11 124489566 124489566 A G PANX3 Missense_Mutation p.Y305C 0.23 deleterious(0) probably_damaging(0.997) TCGA-64-1676-01 11 124754957 124754957 C T ROBO4 Missense_Mutation p.C994Y 0.20 tolerated_low_confidence(1) benign(0.384) TCGA-64-1676-01 11 125301253 125301253 G T PKNOX2 Missense_Mutation p.D462Y 0.21 deleterious_low_confidence(0.04) benign(0.396) TCGA-64-1676-01 11 125482978 125482978 C G STT3A Missense_Mutation p.S487C 0.21 deleterious(0) probably_damaging(0.999) TCGA-64-1676-01 11 20948973 20948973 G C NELL1 Missense_Mutation p.R293S 0.20 deleterious(0.04) benign(0.016) TCGA-64-1676-01 11 22248963 22248963 G A ANO5 Missense_Mutation p.R160H 0.32 tolerated(0.12) possibly_damaging(0.518) TCGA-64-1676-01 11 26700315 26700315 C A SLC5A12 Missense_Mutation p.S508I 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-64-1676-01 11 27147256 27147256 A T BBOX1 Missense_Mutation p.T298S 0.30 tolerated(0.97) benign(0.036) TCGA-64-1676-01 11 33886333 33886333 G A LMO2 Silent p.P93P 0.12 TCGA-64-1676-01 11 40137020 40137020 C - LRRC4C Frame_Shift_Del p.A275Hfs*5 0.27 TCGA-64-1676-01 11 43411214 43411214 G T TTC17 Missense_Mutation p.A88S 0.28 tolerated(0.26) benign(0.147) TCGA-64-1676-01 11 49597803 49597803 C A RP11-707M1.1 RNA 0.12 TCGA-64-1676-01 11 5345155 5345155 G T OR51B2 Missense_Mutation p.R125S 0.37 tolerated(0.73) benign(0.411) TCGA-64-1676-01 11 55038008 55038008 C - TRIM48 3'UTR 0.37 TCGA-64-1676-01 11 55136164 55136164 G T OR4A15 Missense_Mutation p.A269S 0.23 tolerated_low_confidence(0.78) benign(0.162) TCGA-64-1676-01 11 552165 552165 G T LRRC56 Missense_Mutation p.D372Y 0.37 deleterious(0) probably_damaging(0.976) TCGA-64-1676-01 11 55432926 55432926 G C OR4C6 Missense_Mutation p.C95S 0.19 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-64-1676-01 11 55433526 55433526 C A OR4C6 Missense_Mutation p.A295D 0.19 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-64-1676-01 11 55607101 55607101 T A OR5D16 Missense_Mutation p.Y292N 0.22 deleterious(0) probably_damaging(0.948) TCGA-64-1676-01 11 55735298 55735298 G A OR10AG1 Silent p.S214S 0.27 TCGA-64-1676-01 11 55927268 55927268 G T OR8K5 Missense_Mutation p.H176N 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.849) TCGA-64-1676-01 11 56020456 56020456 G C OR5T3 Missense_Mutation p.A261P 0.23 deleterious(0.01) benign(0.208) TCGA-64-1676-01 11 56380871 56380871 T A OR5M1 Silent p.L36L 0.24 TCGA-64-1676-01 11 56511222 56511222 G T OR9G4 Silent p.T22T 0.21 TCGA-64-1676-01 11 58207543 58207543 C A OR5B12 Missense_Mutation p.V28F 0.28 deleterious_low_confidence(0.01) benign(0.01) TCGA-64-1676-01 11 58604550 58604550 T C GLYATL2 Silent p.P138P 0.21 TCGA-64-1676-01 11 58605833 58605833 G T GLYATL2 Silent p.G29G 0.24 TCGA-64-1676-01 11 60064675 60064675 G T MS4A4A Silent p.V69V 0.24 TCGA-64-1676-01 11 6023930 6023930 G - OR56A4 Frame_Shift_Del p.P150Qfs*10 0.31 TCGA-64-1676-01 11 62415695 62415695 C A INTS5 Missense_Mutation p.E619D 0.20 tolerated(0.4) benign(0.073) TCGA-64-1676-01 11 64606195 64606195 A G CDC42BPG Silent p.Y352Y 0.19 TCGA-64-1676-01 11 6643491 6643491 C - DCHS1 Frame_Shift_Del p.G3139Afs*9 0.29 TCGA-64-1676-01 11 66812117 66812117 C A SYT12 Silent p.A297A 0.23 TCGA-64-1676-01 11 67168577 67168577 G T PPP1CA Missense_Mutation p.P61H 0.28 deleterious_low_confidence(0) possibly_damaging(0.89) TCGA-64-1676-01 11 7531356 7531356 C A OLFML1 Silent p.A382A 0.32 TCGA-64-1676-01 11 77727720 77727720 G A KCTD14 Silent p.F229F 0.21 TCGA-64-1676-01 11 78369779 78369779 G A TENM4 Missense_Mutation p.S2545F 0.30 deleterious(0.03) possibly_damaging(0.519) TCGA-64-1676-01 11 78380866 78380866 C A TENM4 Missense_Mutation p.R2175L 0.23 deleterious(0.04) probably_damaging(0.993) TCGA-64-1676-01 11 82645123 82645123 G T C11orf82 Missense_Mutation p.G915C 0.21 tolerated(0.2) benign(0) TCGA-64-1676-01 11 92620173 92620173 G A FAT3 Silent p.G4315G 0.33 TCGA-64-1676-01 11 94134234 94134234 G C GPR83 Silent p.R60R 0.25 TCGA-64-1676-01 11 99941253 99941253 G T CNTN5 Silent p.T420T 0.20 TCGA-64-1676-01 11 99945012 99945012 T C CNTN5 Silent p.V522V 0.20 TCGA-64-1676-01 12 106633401 106633401 G C CKAP4 Missense_Mutation p.Q404E 0.39 tolerated(0.33) benign(0.002) TCGA-64-1676-01 12 108042981 108042981 A T BTBD11 Splice_Site p.X975_splice 0.49 TCGA-64-1676-01 12 110232179 110232179 C A TRPV4 Missense_Mutation p.M482I 0.39 tolerated(0.06) probably_damaging(0.965) TCGA-64-1676-01 12 112235926 112235926 G T ALDH2 Silent p.T376T 0.31 TCGA-64-1676-01 12 113515246 113515246 C A DTX1 Silent p.R93R 0.38 TCGA-64-1676-01 12 121882033 121882033 C A KDM2B Missense_Mutation p.G745C 0.47 deleterious(0.02) probably_damaging(0.971) TCGA-64-1676-01 12 123434340 123434340 C A ABCB9 Missense_Mutation p.R281L 0.41 deleterious(0.04) benign(0.036) TCGA-64-1676-01 12 124364246 124364246 G A DNAH10 Silent p.R2726R 0.37 TCGA-64-1676-01 12 12491436 12491436 G A MANSC1 Silent p.N94N 0.28 TCGA-64-1676-01 12 129563130 129563130 C A TMEM132D Missense_Mutation p.R688S 0.40 deleterious(0) benign(0.098) TCGA-64-1676-01 12 18499667 18499667 G T PIK3C2G Missense_Mutation p.V508L 0.29 tolerated(0.44) benign(0.008) TCGA-64-1676-01 12 1969334 1969334 C G CACNA2D4 Silent p.T639T 0.42 TCGA-64-1676-01 12 20801732 20801732 G T PDE3A Silent p.V892V 0.24 TCGA-64-1676-01 12 20801733 20801733 G T PDE3A Nonsense_Mutation p.E893* 0.23 TCGA-64-1676-01 12 21355423 21355423 A C SLCO1B1 Splice_Site p.X379_splice 0.34 TCGA-64-1676-01 12 25261485 25261485 G T CASC1 Silent p.S722S 0.34 TCGA-64-1676-01 12 41422935 41422935 C G CNTN1 Missense_Mutation p.P965R 0.32 deleterious(0) probably_damaging(1) TCGA-64-1676-01 12 43925996 43925996 C A ADAMTS20 Silent p.T152T 0.26 TCGA-64-1676-01 12 49374219 49374219 C A WNT1 Missense_Mutation p.T124K 0.30 deleterious(0) probably_damaging(0.915) TCGA-64-1676-01 12 49432243 49432243 G A KMT2D Missense_Mutation p.R2966W 0.38 probably_damaging(0.95) TCGA-64-1676-01 12 49949578 49949578 G A KCNH3 Missense_Mutation p.R771H 0.42 tolerated(0.39) benign(0.001) TCGA-64-1676-01 12 50045837 50045837 C G FMNL3 Silent p.L494L 0.36 TCGA-64-1676-01 12 50472204 50472204 C A ASIC1 Missense_Mutation p.L280I 0.36 deleterious(0.03) possibly_damaging(0.511) TCGA-64-1676-01 12 51879644 51879644 G C SLC4A8 Missense_Mutation p.G749A 0.37 deleterious(0.02) probably_damaging(1) TCGA-64-1676-01 12 54423739 54423739 A C HOXC6 Missense_Mutation p.K234T 0.32 deleterious_low_confidence(0.05) unknown(0) TCGA-64-1676-01 12 56395909 56395909 T C SUOX 5'UTR 0.07 TCGA-64-1676-01 12 60098636 60098636 G C SLC16A7 Missense_Mutation p.W18C 0.38 deleterious(0) probably_damaging(0.999) TCGA-64-1676-01 12 72027129 72027129 T C ZFC3H1 Missense_Mutation p.K867R 0.29 deleterious(0.01) probably_damaging(0.987) TCGA-64-1676-01 12 7559189 7559189 T C CD163L1 Silent p.R342R 0.19 TCGA-64-1676-01 12 75678809 75678809 C A CAPS2 Missense_Mutation p.D502Y 0.48 deleterious(0) probably_damaging(0.999) TCGA-64-1676-01 12 8075422 8075422 C A SLC2A3 Missense_Mutation p.A423S 0.26 deleterious(0.04) probably_damaging(0.922) TCGA-64-1676-01 12 81676789 81676789 C A PPFIA2 Missense_Mutation p.Q1006H 0.32 deleterious(0) possibly_damaging(0.881) TCGA-64-1676-01 12 91347339 91347339 G A CCER1 Missense_Mutation p.P394L 0.45 deleterious(0) unknown(0) TCGA-64-1676-01 12 9225296 9225296 C A A2M Missense_Mutation p.G1310W 0.25 deleterious(0) probably_damaging(0.965) TCGA-64-1676-01 12 9302192 9302192 G T PZP Missense_Mutation p.S1464Y 0.29 tolerated(0.24) benign(0.142) TCGA-64-1676-01 12 98126388 98126388 G T RP11-1016B18.1 RNA 0.30 TCGA-64-1676-01 13 102378993 102378993 T G FGF14 Silent p.P197P 0.35 TCGA-64-1676-01 13 110863998 110863998 A T COL4A1 Missense_Mutation p.M155K 0.26 unknown(0) TCGA-64-1676-01 13 19747921 19747921 T C TUBA3C 3'UTR 0.39 TCGA-64-1676-01 13 25744474 25744474 C A AMER2 Silent p.P428P 0.20 TCGA-64-1676-01 13 26043257 26043257 C A ATP8A2 Silent p.I73I 0.25 TCGA-64-1676-01 13 28866674 28866674 G T PAN3 3'UTR 0.27 TCGA-64-1676-01 13 49076887 49076887 C A RCBTB2 Missense_Mutation p.A364S 0.36 tolerated(0.67) probably_damaging(0.916) TCGA-64-1676-01 13 53024666 53024666 G A VPS36 Missense_Mutation p.R22C 0.51 deleterious(0.04) possibly_damaging(0.825) TCGA-64-1676-01 13 53217055 53217055 G T HNRNPA1L2 Missense_Mutation p.G143V 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-64-1676-01 13 61987564 61987564 G T PCDH20 Missense_Mutation p.P223H 0.26 deleterious(0.01) probably_damaging(0.979) TCGA-64-1676-01 13 64321150 64321150 G T AL445989.1 Missense_Mutation p.G73C 0.19 unknown(0) TCGA-64-1676-01 13 88329238 88329238 G T SLITRK5 Missense_Mutation p.R532M 0.36 deleterious(0) probably_damaging(1) TCGA-64-1676-01 13 99520213 99520213 T C DOCK9 Missense_Mutation p.Y1048C 0.45 deleterious(0) probably_damaging(0.914) TCGA-64-1676-01 14 100118631 100118631 G T HHIPL1 Missense_Mutation p.G109V 0.27 deleterious(0) probably_damaging(1) TCGA-64-1676-01 14 101531710 101531710 G A MIR409 RNA 0.28 TCGA-64-1676-01 14 106203999 106203999 G T IGHG1 3'UTR 0.21 TCGA-64-1676-01 14 106311889 106311889 G A IGHD Silent p.T41T 0.20 TCGA-64-1676-01 14 20483031 20483031 T C OR4K14 Missense_Mutation p.T108A 0.19 deleterious(0.02) benign(0.001) TCGA-64-1676-01 14 21108972 21108972 A G OR6S1 Silent p.Y293Y 0.24 TCGA-64-1676-01 14 22447104 22447104 C T TRAV8-6 Nonsense_Mutation p.Q29* 0.25 TCGA-64-1676-01 14 23866764 23866764 C A MYH6 Silent p.S650S 0.22 TCGA-64-1676-01 14 23886822 23886822 C A MYH7 Nonsense_Mutation p.E1415* 0.20 TCGA-64-1676-01 14 23886823 23886823 C A MYH7 Silent p.L1414L 0.21 TCGA-64-1676-01 14 32560197 32560197 C T ARHGAP5 Missense_Mutation p.R108W 0.22 deleterious(0) probably_damaging(1) TCGA-64-1676-01 14 32560198 32560198 G C ARHGAP5 Missense_Mutation p.R108P 0.23 deleterious(0) probably_damaging(0.999) TCGA-64-1676-01 14 33205041 33205041 G T AKAP6 Nonsense_Mutation p.E1109* 0.16 TCGA-64-1676-01 14 39556195 39556195 A C SEC23A Silent p.S207S 0.31 TCGA-64-1676-01 14 59930621 59930621 T A GPR135 Missense_Mutation p.N442Y 0.28 deleterious(0.01) benign(0.102) TCGA-64-1676-01 14 59970757 59970757 A T JKAMP Silent p.S301S 0.11 TCGA-64-1676-01 14 64483301 64483301 G T SYNE2 Missense_Mutation p.E1613D 0.23 benign(0.163) TCGA-64-1676-01 14 65253520 65253520 C A SPTB Missense_Mutation p.D1055Y 0.15 deleterious(0.01) possibly_damaging(0.701) TCGA-64-1676-01 14 70497061 70497061 C A SMOC1 3'UTR 0.37 TCGA-64-1676-01 14 70515594 70515594 C G SLC8A3 Missense_Mutation p.G766A 0.16 deleterious(0.03) possibly_damaging(0.571) TCGA-64-1676-01 14 74969481 74969481 G T LTBP2 Missense_Mutation p.P1682H 0.20 deleterious(0) probably_damaging(0.956) TCGA-64-1676-01 14 88658607 88658607 C A KCNK10 Missense_Mutation p.V277F 0.18 deleterious(0) possibly_damaging(0.524) TCGA-64-1676-01 14 88792843 88792843 C T KCNK10 5'Flank 0.21 TCGA-64-1676-01 14 95030031 95030031 C A SERPINA4 Missense_Mutation p.P71Q 0.33 tolerated(0.09) probably_damaging(0.984) TCGA-64-1676-01 15 100332285 100332285 C A AC090825.1 5'Flank 0.33 TCGA-64-1676-01 15 100672318 100672318 G T ADAMTS17 Missense_Mutation p.P539T 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-64-1676-01 15 24922547 24922547 C A NPAP1 Silent p.V511V 0.28 TCGA-64-1676-01 15 25492500 25492500 G T SNORD115-42 RNA 0.26 TCGA-64-1676-01 15 33872331 33872331 C G RYR3 Missense_Mutation p.L475V 0.48 possibly_damaging(0.815) TCGA-64-1676-01 15 35529688 35529688 C A ANP32AP1 RNA 0.33 TCGA-64-1676-01 15 48057248 48057248 T G SEMA6D Missense_Mutation p.H474Q 0.23 tolerated(0.08) benign(0.001) TCGA-64-1676-01 15 54586108 54586108 C A UNC13C Silent p.S1278S 0.36 TCGA-64-1676-01 15 59808843 59808843 G - FAM81A Splice_Site p.X263_splice 0.25 TCGA-64-1676-01 15 62304305 62304305 C A VPS13C Splice_Site p.X295_splice 0.16 TCGA-64-1676-01 15 63987027 63987027 G C HERC1 Missense_Mutation p.Q1730E 0.28 possibly_damaging(0.713) TCGA-64-1676-01 15 66729153 66729153 T A MAP2K1 Missense_Mutation p.C121S 0.35 deleterious(0) probably_damaging(0.996) TCGA-64-1676-01 15 77907260 77907260 G T LINGO1 Missense_Mutation p.A330D 0.39 deleterious(0) possibly_damaging(0.906) TCGA-64-1676-01 15 79614583 79614583 C T TMED3 3'UTR 0.25 TCGA-64-1676-01 15 81295579 81295579 A G MESDC1 Missense_Mutation p.R323G 0.29 tolerated(0.06) benign(0.21) TCGA-64-1676-01 15 81585042 81585042 G T IL16 Silent p.G522G 0.31 TCGA-64-1676-01 15 83349376 83349376 G T AP3B2 Missense_Mutation p.D301E 0.23 deleterious(0.01) probably_damaging(0.981) TCGA-64-1676-01 15 86266326 86266326 C A AKAP13 Missense_Mutation p.L2178I 0.28 deleterious(0.02) possibly_damaging(0.637) TCGA-64-1676-01 15 86702201 86702201 G T AGBL1 Missense_Mutation p.M98I 0.32 tolerated(0.14) benign(0.293) TCGA-64-1676-01 15 89400186 89400186 T C ACAN Missense_Mutation p.L1457P 0.35 tolerated(0.38) benign(0.011) TCGA-64-1676-01 15 90138748 90138748 G T TICRR Silent p.V602V 0.23 TCGA-64-1676-01 16 1261227 1261227 G T CACNA1H Missense_Mutation p.R1428M 0.54 deleterious(0) probably_damaging(0.999) TCGA-64-1676-01 16 15829246 15829246 G T MYH11 Missense_Mutation p.S1168R 0.23 benign(0.163) TCGA-64-1676-01 16 21261202 21261202 T A ANKS4B Silent p.A105A 0.27 TCGA-64-1676-01 16 2236767 2236767 C - CASKIN1 Frame_Shift_Del p.G330Afs*49 0.21 TCGA-64-1676-01 16 24817548 24817548 A G TNRC6A Missense_Mutation p.R1425G 0.21 tolerated(0.06) benign(0.11) TCGA-64-1676-01 16 28515060 28515060 G T IL27 Missense_Mutation p.L87I 0.22 deleterious(0.01) benign(0.121) TCGA-64-1676-01 16 28906166 28906166 C A ATP2A1 Silent p.V437V 0.10 TCGA-64-1676-01 16 28916237 28916237 G A RABEP2 3'UTR 0.29 TCGA-64-1676-01 16 2946481 2946481 G T FLYWCH2 Missense_Mutation p.G11C 0.29 deleterious(0) possibly_damaging(0.855) TCGA-64-1676-01 16 2946482 2946482 G T FLYWCH2 Missense_Mutation p.G11V 0.29 deleterious(0) benign(0.308) TCGA-64-1676-01 16 31309152 31309152 G T ITGAM Silent p.G529G 0.21 TCGA-64-1676-01 16 3613223 3613223 T A NLRC3 Missense_Mutation p.H619L 0.21 tolerated(0.16) benign(0) TCGA-64-1676-01 16 4164474 4164474 C T ADCY9 Missense_Mutation p.E324K 0.24 tolerated(0.05) probably_damaging(0.999) TCGA-64-1676-01 16 48218375 48218375 G T ABCC11 Silent p.V1078V 0.42 TCGA-64-1676-01 16 49559353 49559353 C A ZNF423 Silent p.P1210P 0.19 TCGA-64-1676-01 16 50744734 50744734 C A NOD2 Silent p.G304G 0.16 TCGA-64-1676-01 16 50745614 50745614 C A NOD2 Missense_Mutation p.P598T 0.14 tolerated(0.7) benign(0.003) TCGA-64-1676-01 16 50788335 50788335 G T CYLD Missense_Mutation p.A305S 0.42 tolerated(0.29) benign(0.002) TCGA-64-1676-01 16 51173730 51173730 G T SALL1 Missense_Mutation p.S801R 0.38 deleterious(0) benign(0.273) TCGA-64-1676-01 16 53342725 53342725 A G CHD9 Missense_Mutation p.E2378G 0.23 unknown(0) TCGA-64-1676-01 16 55880525 55880525 G T CES5A Missense_Mutation p.D551E 0.34 deleterious(0.01) possibly_damaging(0.814) TCGA-64-1676-01 16 56536304 56536304 C A BBS2 Missense_Mutation p.Q335H 0.20 deleterious(0) probably_damaging(0.981) TCGA-64-1676-01 16 56901119 56901119 G A SLC12A3 Silent p.K140K 0.13 TCGA-64-1676-01 16 58314662 58314662 C T PRSS54 Splice_Site p.X219_splice 0.38 TCGA-64-1676-01 16 61851501 61851501 C A CDH8 Nonsense_Mutation p.E387* 0.31 TCGA-64-1676-01 16 67190465 67190465 C A TRADD Silent p.A33A 0.20 TCGA-64-1676-01 16 68010643 68010643 C T DPEP3 Missense_Mutation p.E377K 0.12 tolerated(0.42) benign(0.075) TCGA-64-1676-01 16 715997 715997 G A WDR90 Silent p.E1494E 0.21 TCGA-64-1676-01 16 71604708 71604708 T A TAT Silent p.P262P 0.16 TCGA-64-1676-01 16 75238132 75238132 G T CTRB2 Missense_Mutation p.T240N 0.20 deleterious(0.01) probably_damaging(0.955) TCGA-64-1676-01 16 82033148 82033148 C A SDR42E1 Missense_Mutation p.Q250H 0.18 deleterious(0.01) benign(0.151) TCGA-64-1676-01 17 10432233 10432233 C A MYH2 Missense_Mutation p.R1173L 0.33 deleterious(0.01) probably_damaging(1) TCGA-64-1676-01 17 12044543 12044543 C T MAP2K4 Missense_Mutation p.P389L 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-64-1676-01 17 14248435 14248435 G T HS3ST3B1 Silent p.S215S 0.37 TCGA-64-1676-01 17 19288711 19288711 G T MFAP4 Nonsense_Mutation p.Y123* 0.33 TCGA-64-1676-01 17 19445753 19445753 G T SLC47A1 Silent p.V61V 0.26 TCGA-64-1676-01 17 27093631 27093631 T A FAM222B Missense_Mutation p.T19S 0.32 tolerated(0.3) benign(0.118) TCGA-64-1676-01 17 2966144 2966144 C A OR1D5 Missense_Mutation p.G253V 0.21 deleterious(0) probably_damaging(1) TCGA-64-1676-01 17 2966145 2966145 C A OR1D5 Missense_Mutation p.G253W 0.20 deleterious(0.01) probably_damaging(1) TCGA-64-1676-01 17 30800864 30800864 C T PSMD11 Missense_Mutation p.S230L 0.23 deleterious(0) probably_damaging(1) TCGA-64-1676-01 17 32962070 32962070 G T TMEM132E Silent p.T557T 0.27 TCGA-64-1676-01 17 33768287 33768287 C G SLFN13 Missense_Mutation p.R674P 0.24 deleterious(0) probably_damaging(0.989) TCGA-64-1676-01 17 34263771 34263771 C A LYZL6 Missense_Mutation p.G122V 0.18 deleterious(0) probably_damaging(1) TCGA-64-1676-01 17 37093317 37093317 G T FBXO47 3'UTR 0.40 TCGA-64-1676-01 17 37119170 37119170 G A FBXO47 Missense_Mutation p.P37S 0.23 tolerated(0.89) benign(0.001) TCGA-64-1676-01 17 39079200 39079200 G A KRT23 3'UTR 0.20 TCGA-64-1676-01 17 42394865 42394865 C G RUNDC3A Intron 0.18 TCGA-64-1676-01 17 43004447 43004447 C A KIF18B Splice_Site p.X759_splice 0.26 TCGA-64-1676-01 17 43364128 43364128 G A MAP3K14 RNA 0.30 TCGA-64-1676-01 17 43531202 43531202 A T PLEKHM1 Missense_Mutation p.F672L 0.23 tolerated(0.73) benign(0.001) TCGA-64-1676-01 17 43922293 43922293 C T SPPL2C Silent p.L7L 0.19 TCGA-64-1676-01 17 44067349 44067349 G T MAPT Missense_Mutation p.A430S 0.23 deleterious(0.02) probably_damaging(0.986) TCGA-64-1676-01 17 46700182 46700182 C A HOXB9 3'UTR 0.28 TCGA-64-1676-01 17 51901354 51901354 G T KIF2B Silent p.T320T 0.24 TCGA-64-1676-01 17 61864590 61864590 A C DDX42 Missense_Mutation p.K61Q 0.26 tolerated(0.12) probably_damaging(0.994) TCGA-64-1676-01 17 62019252 62019252 C T SCN4A Missense_Mutation p.G1464R 0.35 tolerated(0.06) possibly_damaging(0.891) TCGA-64-1676-01 17 62230430 62230430 C G TEX2 Missense_Mutation p.E1012D 0.14 deleterious(0) probably_damaging(0.943) TCGA-64-1676-01 17 62859212 62859212 A G LRRC37A3 Intron 0.32 TCGA-64-1676-01 17 67190582 67190582 C A ABCA10 Missense_Mutation p.G430V 0.16 deleterious(0) probably_damaging(0.995) TCGA-64-1676-01 17 7577594 7577595 AC - TP53 Frame_Shift_Del p.C229Yfs*10 0.32 TCGA-64-1676-01 18 12325202 12325202 G C TUBB6 Silent p.S138S 0.34 TCGA-64-1676-01 18 13645329 13645329 G T LDLRAD4 Missense_Mutation p.M198I 0.22 tolerated(0.05) benign(0.04) TCGA-64-1676-01 18 18622649 18622649 T C ROCK1 Missense_Mutation p.T233A 0.26 deleterious(0) benign(0.221) TCGA-64-1676-01 18 21416983 21416983 G T LAMA3 Missense_Mutation p.R1008L 0.18 probably_damaging(0.951) TCGA-64-1676-01 18 22902056 22902056 C A ZNF521 Missense_Mutation p.V46L 0.32 tolerated_low_confidence(0.35) benign(0.002) TCGA-64-1676-01 18 24604116 24604116 C T CHST9 Missense_Mutation p.G56R 0.14 tolerated_low_confidence(0.7) benign(0.002) TCGA-64-1676-01 18 25727729 25727729 C A CDH2 Missense_Mutation p.G27V 0.18 tolerated(0.11) benign(0.017) TCGA-64-1676-01 18 319982 319982 A T COLEC12 3'UTR 0.37 TCGA-64-1676-01 18 33706321 33706321 T A SLC39A6 Missense_Mutation p.D217V 0.31 tolerated(0.16) benign(0.002) TCGA-64-1676-01 18 34349242 34349242 T A FHOD3 Missense_Mutation p.W1364R 0.39 tolerated(0.41) benign(0.078) TCGA-64-1676-01 18 34854816 34854816 G C CELF4 Silent p.A203A 0.18 TCGA-64-1676-01 18 48248367 48248367 G T MAPK4 Nonsense_Mutation p.E251* 0.18 TCGA-64-1676-01 18 5416157 5416157 C A EPB41L3 Missense_Mutation p.R576I 0.24 tolerated(0.15) benign(0.158) TCGA-64-1676-01 18 61570386 61570386 G T SERPINB2 Missense_Mutation p.E365D 0.22 deleterious(0) probably_damaging(0.958) TCGA-64-1676-01 18 63511299 63511299 G C CDH7 Silent p.V411V 0.31 TCGA-64-1676-01 19 11687570 11687570 A T ACP5 Missense_Mutation p.V117D 0.15 deleterious(0) probably_damaging(0.997) TCGA-64-1676-01 19 17000732 17000732 C T F2RL3 Missense_Mutation p.T153M 0.36 deleterious(0.02) benign(0.318) TCGA-64-1676-01 19 22154978 22154978 G T ZNF208 Missense_Mutation p.A953D 0.33 deleterious(0.03) unknown(0) TCGA-64-1676-01 19 36230498 36230498 A G IGFLR1 Missense_Mutation p.S251P 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-64-1676-01 19 37976118 37976118 A T ZNF570 Missense_Mutation p.N532Y 0.28 deleterious_low_confidence(0.01) benign(0.259) TCGA-64-1676-01 19 38976573 38976573 C A RYR1 Missense_Mutation p.H1760N 0.17 possibly_damaging(0.525) TCGA-64-1676-01 19 40411754 40411754 C G FCGBP Missense_Mutation p.A1292P 0.32 probably_damaging(0.988) TCGA-64-1676-01 19 47910765 47910765 G T MEIS3 Missense_Mutation p.P306H 0.34 tolerated_low_confidence(0.23) benign(0.027) TCGA-64-1676-01 19 48653099 48653099 C A LIG1 Splice_Site p.X233_splice 0.11 TCGA-64-1676-01 19 48845927 48845927 C T TMEM143 Missense_Mutation p.A279T 0.27 tolerated(0.24) probably_damaging(0.953) TCGA-64-1676-01 19 51274539 51274539 C T GPR32 Missense_Mutation p.P228S 0.34 deleterious(0) probably_damaging(1) TCGA-64-1676-01 19 51330233 51330233 G T KLK15 Missense_Mutation p.P128T 0.35 tolerated(0.11) probably_damaging(0.996) TCGA-64-1676-01 19 54304586 54304586 T C NLRP12 Missense_Mutation p.Q884R 0.29 tolerated(0.33) benign(0.02) TCGA-64-1676-01 19 54618759 54618759 C A TFPT 5'UTR 0.28 TCGA-64-1676-01 19 55247736 55247736 C T KIR3DL3 3'UTR 0.40 TCGA-64-1676-01 19 56369712 56369712 C A NLRP4 Missense_Mutation p.P318Q 0.39 tolerated(0.3) benign(0.015) TCGA-64-1676-01 19 57646630 57646630 C T ZIM3 Missense_Mutation p.G359R 0.33 deleterious(0.03) possibly_damaging(0.893) TCGA-64-1676-01 19 9020128 9020128 A T MUC16 Missense_Mutation p.V12456E 0.30 possibly_damaging(0.679) TCGA-64-1676-01 19 9047436 9047436 C A MUC16 Missense_Mutation p.D11399Y 0.34 benign(0.016) TCGA-64-1676-01 1 101704717 101704717 C A S1PR1 Silent p.I59I 0.25 TCGA-64-1676-01 1 104297213 104297213 G T AMY1C Missense_Mutation p.G324V 0.11 deleterious(0.02) probably_damaging(1) TCGA-64-1676-01 1 110584388 110584388 A T STRIP1 Missense_Mutation p.I264F 0.22 deleterious(0) benign(0.247) TCGA-64-1676-01 1 110741195 110741195 T C SLC6A17 3'UTR 0.14 TCGA-64-1676-01 1 110754218 110754218 G T KCNC4 Nonsense_Mutation p.E33* 0.23 TCGA-64-1676-01 1 111778693 111778693 G T CHI3L2 Missense_Mutation p.W218L 0.22 deleterious(0.02) possibly_damaging(0.516) TCGA-64-1676-01 1 113456702 113456702 G A SLC16A1 Silent p.F438F 0.20 TCGA-64-1676-01 1 11766494 11766494 G T DRAXIN Missense_Mutation p.R60L 0.23 deleterious(0.02) possibly_damaging(0.626) TCGA-64-1676-01 1 119964605 119964605 G C HSD3B2 Missense_Mutation p.A161P 0.24 deleterious(0) probably_damaging(0.992) TCGA-64-1676-01 1 1500240 1500240 C T SSU72 Missense_Mutation p.G46E 0.21 deleterious(0) probably_damaging(1) TCGA-64-1676-01 1 151020974 151020974 C A C1orf56 Silent p.T217T 0.25 TCGA-64-1676-01 1 152277375 152277375 G C FLG Missense_Mutation p.D3329E 0.26 unknown(0) TCGA-64-1676-01 1 152282083 152282083 C G FLG Missense_Mutation p.G1760A 0.36 possibly_damaging(0.794) TCGA-64-1676-01 1 152733826 152733826 C A KPRP 3'UTR 0.23 TCGA-64-1676-01 1 152759841 152759841 C T LCE1E Silent p.P22P 0.26 TCGA-64-1676-01 1 153995618 153995618 C T NUP210L Silent p.Q1426Q 0.23 TCGA-64-1676-01 1 156618448 156618448 C G BCAN Silent p.T286T 0.33 TCGA-64-1676-01 1 156784833 156784833 G T SH2D2A Silent p.R102R 0.08 TCGA-64-1676-01 1 157062424 157062424 C A ETV3L 3'UTR 0.32 TCGA-64-1676-01 1 157737419 157737419 C T FCRL2 Intron 0.15 TCGA-64-1676-01 1 158063219 158063219 A T KIRREL Missense_Mutation p.Y521F 0.41 tolerated(0.59) probably_damaging(0.996) TCGA-64-1676-01 1 15809791 15809791 C A CELA2B Missense_Mutation p.P130H 0.23 tolerated(0.25) benign(0.02) TCGA-64-1676-01 1 158151904 158151904 A T CD1D Missense_Mutation p.Q137H 0.24 deleterious(0.02) possibly_damaging(0.903) TCGA-64-1676-01 1 158583631 158583631 C A SPTA1 Missense_Mutation p.R2290L 0.06 deleterious(0) possibly_damaging(0.651) TCGA-64-1676-01 1 158644393 158644393 A T SPTA1 Silent p.A395A 0.31 TCGA-64-1676-01 1 15983175 15983175 G T DDI2 Splice_Site 0.22 TCGA-64-1676-01 1 160146346 160146346 T A ATP1A4 Missense_Mutation p.D848E 0.27 tolerated(0.05) benign(0.003) TCGA-64-1676-01 1 160784485 160784485 C A LY9 Missense_Mutation p.H336N 0.27 tolerated(0.23) benign(0.032) TCGA-64-1676-01 1 168670292 168670292 T A DPT Missense_Mutation p.I168F 0.21 deleterious(0.02) benign(0.025) TCGA-64-1676-01 1 169566297 169566297 A T SELP Missense_Mutation p.L608Q 0.09 deleterious(0.03) probably_damaging(0.991) TCGA-64-1676-01 1 172558355 172558355 G T SUCO Missense_Mutation p.S705I 0.31 tolerated(0.18) benign(0.001) TCGA-64-1676-01 1 176738883 176738883 C T PAPPA2 Silent p.R1488R 0.09 TCGA-64-1676-01 1 176927497 176927497 C G ASTN1 Missense_Mutation p.D574H 0.26 deleterious(0) probably_damaging(0.959) TCGA-64-1676-01 1 176998824 176998824 C G ASTN1 Missense_Mutation p.D356H 0.23 deleterious_low_confidence(0) possibly_damaging(0.906) TCGA-64-1676-01 1 180885793 180885793 C T KIAA1614 Missense_Mutation p.P185L 0.24 tolerated(0.37) benign(0.044) TCGA-64-1676-01 1 181546938 181546938 C A CACNA1E Missense_Mutation p.H183Q 0.29 tolerated(0.65) possibly_damaging(0.683) TCGA-64-1676-01 1 185106753 185106753 C G TRMT1L Missense_Mutation p.G500R 0.06 deleterious(0.02) possibly_damaging(0.897) TCGA-64-1676-01 1 185959564 185959564 G A HMCN1 Silent p.P1122P 0.29 TCGA-64-1676-01 1 186114898 186114898 G T HMCN1 Missense_Mutation p.W4817C 0.25 probably_damaging(0.985) TCGA-64-1676-01 1 196197364 196197364 G T KCNT2 Missense_Mutation p.T1133N 0.15 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-64-1676-01 1 198721475 198721475 G T PTPRC Missense_Mutation p.R1102L 0.15 deleterious(0) probably_damaging(0.99) TCGA-64-1676-01 1 203024729 203024729 G T PPFIA4 Missense_Mutation p.G161C 0.21 deleterious(0) probably_damaging(0.998) TCGA-64-1676-01 1 204237428 204237428 C T PLEKHA6 Missense_Mutation p.A39T 0.16 deleterious(0.03) benign(0.014) TCGA-64-1676-01 1 205290708 205290708 C G NUAK2 Missense_Mutation p.A17P 0.31 deleterious_low_confidence(0.02) benign(0.238) TCGA-64-1676-01 1 205538353 205538353 G C MFSD4 Missense_Mutation p.Q52H 0.35 deleterious(0.03) benign(0.049) TCGA-64-1676-01 1 217955584 217955584 G - SPATA17 Frame_Shift_Del p.A265Qfs*7 0.34 TCGA-64-1676-01 1 222713410 222713410 C A HHIPL2 Missense_Mutation p.W464C 0.21 deleterious(0) probably_damaging(0.962) TCGA-64-1676-01 1 226176062 226176062 T G SDE2 Silent p.A223A 0.31 TCGA-64-1676-01 1 226822507 226822507 C A ITPKB Silent p.T902T 0.27 TCGA-64-1676-01 1 227219083 227219083 T G CDC42BPA Silent p.R1196R 0.38 TCGA-64-1676-01 1 228509335 228509335 G C OBSCN Missense_Mutation p.W5888C 0.25 probably_damaging(0.999) TCGA-64-1676-01 1 229568343 229568343 G T ACTA1 Silent p.I138I 0.37 TCGA-64-1676-01 1 236192920 236192920 C A NID1 Silent p.V556V 0.34 TCGA-64-1676-01 1 236907995 236907995 G T ACTN2 Missense_Mutation p.R442L 0.21 deleterious(0) probably_damaging(0.98) TCGA-64-1676-01 1 237713847 237713847 G T RYR2 Missense_Mutation p.V1024L 0.26 benign(0.042) TCGA-64-1676-01 1 237817571 237817571 T A RYR2 Intron 0.19 TCGA-64-1676-01 1 237951302 237951302 A C RYR2 Missense_Mutation p.E4448A 0.18 benign(0.029) TCGA-64-1676-01 1 238053457 238053457 G T ZP4 Missense_Mutation p.H65Q 0.25 deleterious(0.04) benign(0.331) TCGA-64-1676-01 1 240255646 240255646 G T FMN2 Silent p.R79R 0.20 TCGA-64-1676-01 1 24385442 24385442 G A MYOM3 Missense_Mutation p.P1341L 0.21 deleterious(0) probably_damaging(1) TCGA-64-1676-01 1 247587961 247587961 T C NLRP3 Missense_Mutation p.F406L 0.17 tolerated(0.06) benign(0.053) TCGA-64-1676-01 1 247835510 247835510 C A OR13G1 Silent p.V278V 0.35 TCGA-64-1676-01 1 248028078 248028078 G A TRIM58 Silent p.E196E 0.09 TCGA-64-1676-01 1 248112202 248112202 G T OR2L8 Missense_Mutation p.G15W 0.26 deleterious(0) probably_damaging(1) TCGA-64-1676-01 1 248844970 248844970 C A OR14I1 Missense_Mutation p.M212I 0.33 tolerated(1) benign(0.004) TCGA-64-1676-01 1 248845065 248845065 G A OR14I1 Missense_Mutation p.H181Y 0.07 deleterious(0) possibly_damaging(0.884) TCGA-64-1676-01 1 27876408 27876408 C G AHDC1 Missense_Mutation p.R740P 0.21 deleterious(0) possibly_damaging(0.655) TCGA-64-1676-01 1 33562427 33562427 C T ADC Silent p.I291I 0.20 TCGA-64-1676-01 1 36381063 36381063 C T AGO1 Nonsense_Mutation p.Q650* 0.31 TCGA-64-1676-01 1 36563472 36563472 C A COL8A2 Missense_Mutation p.G604C 0.27 deleterious(0.04) probably_damaging(0.994) TCGA-64-1676-01 1 40705942 40705942 C T RLF Silent p.S1856S 0.24 TCGA-64-1676-01 1 43779579 43779579 G T TIE1 Silent p.L783L 0.25 TCGA-64-1676-01 1 44441771 44441771 G A ATP6V0B Silent p.T42T 0.07 TCGA-64-1676-01 1 46521524 46521524 A G PIK3R3 Missense_Mutation p.M295T 0.21 deleterious(0.03) probably_damaging(0.931) TCGA-64-1676-01 1 47395930 47395930 G T CYP4A11 Missense_Mutation p.L473M 0.18 tolerated(0.08) probably_damaging(0.939) TCGA-64-1676-01 1 57611039 57611039 G T DAB1 Missense_Mutation p.A44D 0.24 deleterious(0) probably_damaging(1) TCGA-64-1676-01 1 57611099 57611099 T A DAB1 Missense_Mutation p.Q24L 0.22 deleterious(0.03) possibly_damaging(0.6) TCGA-64-1676-01 1 63084481 63084481 C G DOCK7 Silent p.P526P 0.22 TCGA-64-1676-01 1 66083707 66083707 G A LEPR Nonsense_Mutation p.W758* 0.10 TCGA-64-1676-01 1 6706000 6706000 C T DNAJC11 Missense_Mutation p.R248H 0.25 tolerated(0.41) benign(0.007) TCGA-64-1676-01 1 67108500 67108500 C A SGIP1 Missense_Mutation p.P79H 0.22 deleterious(0) probably_damaging(0.996) TCGA-64-1676-01 1 67243129 67243129 C A TCTEX1D1 Missense_Mutation p.L178I 0.21 deleterious(0.01) benign(0.158) TCGA-64-1676-01 1 70611392 70611392 C A LRRC40 3'UTR 0.38 TCGA-64-1676-01 1 74902192 74902192 C T TNNI3K Silent p.N721N 0.12 TCGA-64-1676-01 1 75672394 75672394 C A SLC44A5 Silent p.L686L 0.24 TCGA-64-1676-01 1 7805036 7805036 A G CAMTA1 Missense_Mutation p.S1442G 0.18 tolerated(0.3) benign(0) TCGA-64-1676-01 1 82447508 82447508 G T LPHN2 Missense_Mutation p.A1027S 0.23 tolerated(0.14) possibly_damaging(0.814) TCGA-64-1676-01 1 85725280 85725280 C A C1orf52 Missense_Mutation p.A13S 0.27 tolerated(0.06) probably_damaging(0.99) TCGA-64-1676-01 1 89523826 89523826 G A GBP1 Silent p.P241P 0.28 TCGA-64-1676-01 1 90399760 90399760 T G LRRC8D Missense_Mutation p.F378C 0.10 deleterious(0.05) benign(0.002) TCGA-64-1676-01 1 9097503 9097503 G T SLC2A5 3'UTR 0.23 TCGA-64-1676-01 1 94496568 94496568 G T ABCA4 Missense_Mutation p.Q1413K 0.16 deleterious(0.03) probably_damaging(0.978) TCGA-64-1676-01 1 9713652 9713652 T A C1orf200 3'UTR 0.20 TCGA-64-1676-01 1 9714056 9714056 G T C1orf200 Silent p.L95L 0.18 TCGA-64-1676-01 1 99772348 99772348 A T LPPR4 Missense_Mutation p.S692C 0.22 deleterious(0.01) benign(0.155) TCGA-64-1676-01 20 13912364 13912364 T A SEL1L2 Silent p.T56T 0.26 TCGA-64-1676-01 20 20269349 20269349 A G C20orf26 Missense_Mutation p.T965A 0.27 tolerated(0.53) benign(0.004) TCGA-64-1676-01 20 23370621 23370621 G C NAPB Missense_Mutation p.L175V 0.16 deleterious(0) probably_damaging(0.99) TCGA-64-1676-01 20 2945550 2945550 G - PTPRA Frame_Shift_Del p.A40Qfs*17 0.27 TCGA-64-1676-01 20 32878562 32878562 G A AHCY Silent p.I247I 0.26 TCGA-64-1676-01 20 39801184 39801184 G T PLCG1 Missense_Mutation p.R1010L 0.11 deleterious(0) probably_damaging(1) TCGA-64-1676-01 20 39985681 39985681 G T LPIN3 Missense_Mutation p.R602L 0.19 tolerated(0.23) benign(0.007) TCGA-64-1676-01 20 42199282 42199282 G A SGK2 Missense_Mutation p.R189H 0.14 deleterious(0.04) benign(0.09) TCGA-64-1676-01 20 42635213 42635213 C A TOX2 Missense_Mutation p.N64K 0.08 deleterious(0.01) probably_damaging(0.994) TCGA-64-1676-01 20 46268485 46268485 A G NCOA3 Missense_Mutation p.I958V 0.30 tolerated(0.4) benign(0) TCGA-64-1676-01 20 46313275 46313275 C A SULF2 Missense_Mutation p.R263L 0.26 deleterious(0.02) probably_damaging(1) TCGA-64-1676-01 20 47364417 47364417 C A PREX1 Missense_Mutation p.A74S 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-64-1676-01 20 48504417 48504417 G T SLC9A8 Nonsense_Mutation p.E580* 0.31 TCGA-64-1676-01 20 49626742 49626742 C A KCNG1 Missense_Mutation p.R45L 0.36 tolerated(0.92) benign(0.001) TCGA-64-1676-01 20 50407691 50407691 T A SALL4 Missense_Mutation p.E444V 0.38 deleterious(0) benign(0.365) TCGA-64-1676-01 20 5294629 5294629 G T PROKR2 Silent p.A129A 0.27 TCGA-64-1676-01 20 56078492 56078492 C A CTCFL Nonsense_Mutation p.E614* 0.29 TCGA-64-1676-01 20 56227123 56227123 C T PMEPA1 Missense_Mutation p.G284R 0.20 deleterious_low_confidence(0) probably_damaging(0.929) TCGA-64-1676-01 20 58567503 58567503 G T CDH26 Nonsense_Mutation p.E452* 0.18 TCGA-64-1676-01 20 60888802 60888802 G C LAMA5 Missense_Mutation p.T2854S 0.28 benign(0.262) TCGA-64-1676-01 20 61386223 61386223 G T NTSR1 Missense_Mutation p.G301C 0.35 deleterious(0.01) probably_damaging(0.987) TCGA-64-1676-01 20 61453144 61453144 C A COL9A3 Silent p.I135I 0.15 TCGA-64-1676-01 20 61982276 61982276 T C CHRNA4 Missense_Mutation p.I163V 0.16 deleterious(0) probably_damaging(0.989) TCGA-64-1676-01 20 62044883 62044883 G C KCNQ2 Silent p.P561P 0.27 TCGA-64-1676-01 20 62073809 62073809 C A KCNQ2 Missense_Mutation p.G256W 0.27 deleterious(0) possibly_damaging(0.886) TCGA-64-1676-01 21 22849675 22849675 G T NCAM2 Nonsense_Mutation p.E654* 0.18 TCGA-64-1676-01 21 26969716 26969716 C A MRPL39 Missense_Mutation p.R200L 0.40 tolerated(0.07) benign(0.106) TCGA-64-1676-01 21 27062220 27062220 C A JAM2 Missense_Mutation p.S59Y 0.19 deleterious(0.04) possibly_damaging(0.783) TCGA-64-1676-01 21 28209990 28209990 G A ADAMTS1 Missense_Mutation p.H938Y 0.20 tolerated(0.97) benign(0.03) TCGA-64-1676-01 21 28296585 28296585 G A ADAMTS5 Silent p.N860N 0.26 TCGA-64-1676-01 21 31768509 31768509 C T KRTAP13-1 Silent p.V35V 0.24 TCGA-64-1676-01 21 31914063 31914063 G T KRTAP19-6 Nonsense_Mutation p.Y30* 0.27 TCGA-64-1676-01 21 32525054 32525054 G A TIAM1 Missense_Mutation p.T1089M 0.11 deleterious(0.02) benign(0.034) TCGA-64-1676-01 21 46021721 46021721 C T KRTAP10-7 3'UTR 0.31 TCGA-64-1676-01 21 47360037 47360037 G A PCBP3 Missense_Mutation p.G335R 0.33 deleterious(0) probably_damaging(0.998) TCGA-64-1676-01 22 20812279 20812279 G A KLHL22 Missense_Mutation p.P374L 0.35 deleterious(0) probably_damaging(0.985) TCGA-64-1676-01 22 22764308 22764308 C A IGLV1-40 Missense_Mutation p.S17Y 0.33 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-64-1676-01 22 25145401 25145401 G A PIWIL3 Missense_Mutation p.T435I 0.19 deleterious(0.02) benign(0.05) TCGA-64-1676-01 22 26688319 26688319 G A SEZ6L Intron 0.35 TCGA-64-1676-01 2 113304689 113304689 G C POLR1B Missense_Mutation p.C93S 0.22 tolerated(0.54) benign(0.021) TCGA-64-1676-01 2 119727850 119727850 C A MARCO Silent p.L120L 0.18 TCGA-64-1676-01 2 119749443 119749443 G T MARCO Missense_Mutation p.G400V 0.41 deleterious(0) unknown(0) TCGA-64-1676-01 2 125281944 125281944 G T CNTNAP5 Silent p.T463T 0.21 TCGA-64-1676-01 2 131487640 131487640 G T GPR148 Nonsense_Mutation p.E306* 0.11 TCGA-64-1676-01 2 131520903 131520903 G T AMER3 Missense_Mutation p.D420Y 0.23 deleterious(0) probably_damaging(1) TCGA-64-1676-01 2 140995750 140995750 C A LRP1B Missense_Mutation p.D4511Y 0.23 possibly_damaging(0.861) TCGA-64-1676-01 2 141459809 141459809 T C LRP1B Missense_Mutation p.D2068G 0.32 possibly_damaging(0.539) TCGA-64-1676-01 2 145274897 145274897 C A ZEB2 Silent p.A7A 0.12 TCGA-64-1676-01 2 152566225 152566225 T A NEB Missense_Mutation p.Q327L 0.20 possibly_damaging(0.703) TCGA-64-1676-01 2 15470780 15470780 T A NBAS Missense_Mutation p.Q1430L 0.27 tolerated(0.2) benign(0.142) TCGA-64-1676-01 2 160229615 160229615 C G BAZ2B Missense_Mutation p.R1385P 0.13 probably_damaging(0.999) TCGA-64-1676-01 2 160741774 160741774 G A LY75-CD302 Missense_Mutation p.S315F 0.23 deleterious(0) probably_damaging(0.983) TCGA-64-1676-01 2 162661084 162661084 G T SLC4A10 Nonsense_Mutation p.G86* 0.09 TCGA-64-1676-01 2 166198918 166198918 G T SCN2A Missense_Mutation p.S834I 0.25 deleterious(0) possibly_damaging(0.908) TCGA-64-1676-01 2 168726315 168726315 C A B3GALT1 Missense_Mutation p.L256I 0.35 tolerated(0.12) probably_damaging(0.91) TCGA-64-1676-01 2 171509600 171509600 C A MYO3B Missense_Mutation p.S1332Y 0.10 deleterious_low_confidence(0.03) benign(0.332) TCGA-64-1676-01 2 178977516 178977516 G T RBM45 Missense_Mutation p.R81S 0.23 tolerated(0.2) benign(0.117) TCGA-64-1676-01 2 179427841 179427841 G A TTN Missense_Mutation p.P27673L 0.24 TCGA-64-1676-01 2 179433781 179433781 A C TTN Missense_Mutation p.I25693S 0.25 TCGA-64-1676-01 2 179452755 179452755 G C TTN Missense_Mutation p.R21127G 0.10 TCGA-64-1676-01 2 179565924 179565924 G T TTN Missense_Mutation p.P10202H 0.25 TCGA-64-1676-01 2 179567349 179567349 C A TTN Missense_Mutation p.V10089L 0.28 TCGA-64-1676-01 2 185803686 185803686 C A ZNF804A Missense_Mutation p.P1188H 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-64-1676-01 2 189859297 189859297 G T COL3A1 Nonsense_Mutation p.E442* 0.19 TCGA-64-1676-01 2 189929366 189929366 G T COL5A2 Silent p.R545R 0.13 TCGA-64-1676-01 2 198265001 198265001 G A SF3B1 Missense_Mutation p.A959V 0.29 tolerated(0.05) benign(0.391) TCGA-64-1676-01 2 200298195 200298195 C A SATB2 Missense_Mutation p.G71V 0.22 tolerated(0.17) benign(0.017) TCGA-64-1676-01 2 207528121 207528121 T A DYTN Splice_Site p.X381_splice 0.27 TCGA-64-1676-01 2 211085421 211085421 C G ACADL Silent p.R61R 0.28 TCGA-64-1676-01 2 220073185 220073185 G A ZFAND2B Missense_Mutation p.V189M 0.12 tolerated(0.08) possibly_damaging(0.851) TCGA-64-1676-01 2 223158469 223158469 G C PAX3 Intron 0.25 TCGA-64-1676-01 2 228771916 228771916 A T DAW1 Silent p.L307L 0.14 TCGA-64-1676-01 2 228886442 228886442 C A SPHKAP Missense_Mutation p.D228Y 0.28 deleterious(0) possibly_damaging(0.873) TCGA-64-1676-01 2 231775240 231775240 C A GPR55 Missense_Mutation p.W146C 0.30 deleterious(0) possibly_damaging(0.904) TCGA-64-1676-01 2 233406159 233406159 G A CHRNG Silent p.P142P 0.14 TCGA-64-1676-01 2 234750371 234750371 C A HJURP Missense_Mutation p.G352V 0.10 deleterious(0) possibly_damaging(0.883) TCGA-64-1676-01 2 234750372 234750372 C A HJURP Missense_Mutation p.G352C 0.10 deleterious(0) probably_damaging(0.954) TCGA-64-1676-01 2 239164502 239164502 C A PER2 Missense_Mutation p.G706C 0.15 tolerated(0.05) probably_damaging(1) TCGA-64-1676-01 2 239165693 239165693 C A PER2 Silent p.T645T 0.21 TCGA-64-1676-01 2 241070375 241070375 C T MYEOV2 Intron 0.33 TCGA-64-1676-01 2 242402803 242402803 G T FARP2 Silent p.T577T 0.24 TCGA-64-1676-01 2 27884203 27884203 C A SUPT7L Missense_Mutation p.D23Y 0.34 deleterious(0.01) probably_damaging(0.952) TCGA-64-1676-01 2 30955326 30955326 C A CAPN13 Silent p.L635L 0.38 TCGA-64-1676-01 2 3428348 3428348 C T TRAPPC12 Missense_Mutation p.A444V 0.33 tolerated(0.05) probably_damaging(0.977) TCGA-64-1676-01 2 43980795 43980795 A G PLEKHH2 Missense_Mutation p.R1231G 0.10 deleterious(0) benign(0.423) TCGA-64-1676-01 2 46611777 46611777 G T EPAS1 Missense_Mutation p.R864I 0.10 deleterious(0) probably_damaging(0.983) TCGA-64-1676-01 2 53943863 53943863 G C ASB3 Missense_Mutation p.Q243E 0.03 deleterious(0) possibly_damaging(0.794) TCGA-64-1676-01 2 55549736 55549736 C A CCDC88A Missense_Mutation p.W1029C 0.43 deleterious(0) probably_damaging(1) TCGA-64-1676-01 2 60773198 60773198 G T BCL11A Missense_Mutation p.P98H 0.25 deleterious(0) probably_damaging(0.998) TCGA-64-1676-01 2 71827833 71827833 G T DYSF Missense_Mutation p.G1253V 0.34 deleterious(0) probably_damaging(0.991) TCGA-64-1676-01 2 72374759 72374759 C A CYP26B1 Splice_Site p.X68_splice 0.57 TCGA-64-1676-01 2 74725064 74725064 A T LBX2 Missense_Mutation p.V192E 0.44 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-64-1676-01 2 77745991 77745991 C A LRRTM4 Missense_Mutation p.S335I 0.16 tolerated(0.55) benign(0.017) TCGA-64-1676-01 2 85991289 85991289 G C ATOH8 Missense_Mutation p.R315P 0.14 deleterious(0) probably_damaging(0.99) TCGA-64-1676-01 2 87017643 87017643 G C CD8A Missense_Mutation p.L71V 0.22 tolerated(0.25) benign(0.298) TCGA-64-1676-01 3 100002603 100002603 C A TBC1D23 Missense_Mutation p.R142S 0.15 deleterious(0) possibly_damaging(0.84) TCGA-64-1676-01 3 105271017 105271017 G C ALCAM Missense_Mutation p.E513Q 0.18 tolerated(0.31) benign(0.446) TCGA-64-1676-01 3 111432892 111432892 T G PLCXD2 Missense_Mutation p.H261Q 0.18 tolerated(0.07) probably_damaging(0.998) TCGA-64-1676-01 3 111710643 111710643 A T ABHD10 3'UTR 0.21 TCGA-64-1676-01 3 111870801 111870801 G T SLC9C1 Missense_Mutation p.H1143N 0.25 tolerated_low_confidence(0.26) benign(0.001) TCGA-64-1676-01 3 119300944 119300944 C G ADPRH Intron 0.33 TCGA-64-1676-01 3 122631817 122631817 G T SEMA5B Silent p.S920S 0.17 TCGA-64-1676-01 3 124646418 124646418 C A MUC13 Missense_Mutation p.G158C 0.22 tolerated(0.09) possibly_damaging(0.533) TCGA-64-1676-01 3 126180702 126180702 C A ZXDC Silent p.V601V 0.25 TCGA-64-1676-01 3 126224636 126224636 C T UROC1 Missense_Mutation p.G241R 0.20 deleterious(0.01) probably_damaging(1) TCGA-64-1676-01 3 127324962 127324962 G T MCM2 Missense_Mutation p.E225D 0.26 tolerated(0.61) benign(0.005) TCGA-64-1676-01 3 130313158 130313158 C A COL6A6 Missense_Mutation p.R1502S 0.21 tolerated(0.46) benign(0.097) TCGA-64-1676-01 3 130425910 130425910 G A PIK3R4 Missense_Mutation p.P868L 0.21 deleterious(0.04) benign(0.003) TCGA-64-1676-01 3 134278166 134278166 T C CEP63 Silent p.S616S 0.25 TCGA-64-1676-01 3 142537297 142537297 G T PCOLCE2 Nonsense_Mutation p.Y376* 0.28 TCGA-64-1676-01 3 142747463 142747463 A T U2SURP Missense_Mutation p.S529C 0.30 tolerated(0.06) benign(0.014) TCGA-64-1676-01 3 142841221 142841221 C A CHST2 Missense_Mutation p.S521R 0.26 deleterious(0.02) benign(0.187) TCGA-64-1676-01 3 148863150 148863150 C G HPS3 Missense_Mutation p.T327R 0.22 tolerated(0.46) benign(0.375) TCGA-64-1676-01 3 149051183 149051183 G T TM4SF18 5'UTR 0.33 TCGA-64-1676-01 3 151134112 151134112 C T MED12L Nonsense_Mutation p.Q2069* 0.33 TCGA-64-1676-01 3 167031857 167031857 C A ZBBX Missense_Mutation p.G441V 0.16 tolerated(0.2) benign(0.164) TCGA-64-1676-01 3 167322244 167322244 G T WDR49 5'UTR 0.22 TCGA-64-1676-01 3 17208408 17208408 G T TBC1D5 Missense_Mutation p.L671I 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-64-1676-01 3 172163026 172163026 G T GHSR Silent p.P342P 0.22 TCGA-64-1676-01 3 173525608 173525608 G T NLGN1 Missense_Mutation p.R211L 0.32 deleterious(0) possibly_damaging(0.842) TCGA-64-1676-01 3 183225911 183225911 C A KLHL6 Missense_Mutation p.R282M 0.20 deleterious(0.01) probably_damaging(0.91) TCGA-64-1676-01 3 184104632 184104632 G T CHRD Splice_Site p.X733_splice 0.18 TCGA-64-1676-01 3 184429233 184429233 C A MAGEF1 Missense_Mutation p.R126L 0.18 deleterious(0.01) probably_damaging(0.993) TCGA-64-1676-01 3 185986600 185986600 C G DGKG Missense_Mutation p.C369S 0.25 deleterious(0) probably_damaging(0.998) TCGA-64-1676-01 3 186038373 186038373 G C DGKG 5'UTR 0.32 TCGA-64-1676-01 3 187416442 187416442 C T RTP2 Silent p.E174E 0.25 TCGA-64-1676-01 3 188925302 188925302 G T TPRG1 Missense_Mutation p.R43S 0.23 deleterious(0.04) benign(0.029) TCGA-64-1676-01 3 382518 382518 G T CHL1 Missense_Mutation p.V143L 0.31 deleterious(0) benign(0.377) TCGA-64-1676-01 3 42166916 42166916 G T TRAK1 Silent p.V32V 0.33 TCGA-64-1676-01 3 42799619 42799619 C A CCDC13 Missense_Mutation p.K73N 0.30 tolerated(0.1) benign(0.156) TCGA-64-1676-01 3 4718485 4718485 G T ITPR1 Missense_Mutation p.Q974H 0.25 deleterious(0.05) probably_damaging(0.995) TCGA-64-1676-01 3 47882439 47882439 G T DHX30 Missense_Mutation p.G147C 0.40 deleterious_low_confidence(0) possibly_damaging(0.864) TCGA-64-1676-01 3 49397507 49397507 C A RHOA 3'UTR 0.45 TCGA-64-1676-01 3 58619932 58619932 C A FAM3D 3'UTR 0.35 TCGA-64-1676-01 3 81586172 81586172 G A GBE1 Missense_Mutation p.R565W 0.27 deleterious(0) probably_damaging(1) TCGA-64-1676-01 3 89480412 89480412 G T EPHA3 Missense_Mutation p.R750L 0.34 deleterious(0) probably_damaging(0.998) TCGA-64-1676-01 3 97851886 97851886 G T OR5H1 Missense_Mutation p.L115F 0.23 deleterious(0) probably_damaging(0.994) TCGA-64-1676-01 3 98503797 98503797 G T ST3GAL6 Missense_Mutation p.C115F 0.26 deleterious(0) probably_damaging(0.997) TCGA-64-1676-01 4 100235229 100235229 C A ADH1B Missense_Mutation p.G193C 0.21 deleterious(0) probably_damaging(0.995) TCGA-64-1676-01 4 10027563 10027563 C A SLC2A9 5'Flank 0.25 TCGA-64-1676-01 4 1018108 1018108 G T FGFRL1 Missense_Mutation p.R243L 0.21 deleterious(0.04) benign(0.269) TCGA-64-1676-01 4 103553402 103553402 C T MANBA Missense_Mutation p.D818N 0.22 tolerated(0.35) benign(0.266) TCGA-64-1676-01 4 119064823 119064823 C A NDST3 Missense_Mutation p.T508N 0.31 deleterious(0) probably_damaging(0.991) TCGA-64-1676-01 4 146576326 146576326 G T MMAA Nonsense_Mutation p.E333* 0.20 TCGA-64-1676-01 4 147561705 147561705 G T POU4F2 Missense_Mutation p.E325D 0.25 tolerated(0.05) probably_damaging(0.973) TCGA-64-1676-01 4 149356498 149356498 C A NR3C2 Missense_Mutation p.E505D 0.21 tolerated(0.09) possibly_damaging(0.636) TCGA-64-1676-01 4 153692094 153692094 T C TIGD4 Silent p.L21L 0.25 TCGA-64-1676-01 4 155487128 155487128 T A FGB Missense_Mutation p.C95S 0.29 deleterious(0) probably_damaging(0.997) TCGA-64-1676-01 4 158058029 158058029 C A GLRB Missense_Mutation p.L201M 0.32 tolerated(0.1) probably_damaging(0.969) TCGA-64-1676-01 4 164466875 164466875 G T MARCH1 Silent p.T148T 0.26 TCGA-64-1676-01 4 165878351 165878351 G T FAM218A Missense_Mutation p.L59F 0.19 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-64-1676-01 4 166935713 166935713 G T TLL1 Splice_Site p.X348_splice 0.19 TCGA-64-1676-01 4 176556078 176556078 T A GPM6A Missense_Mutation p.E272V 0.27 deleterious(0) probably_damaging(0.996) TCGA-64-1676-01 4 177069477 177069477 G T WDR17 Missense_Mutation p.D654Y 0.15 deleterious(0) probably_damaging(1) TCGA-64-1676-01 4 177608608 177608608 C A VEGFC Missense_Mutation p.C293F 0.20 deleterious(0) probably_damaging(0.999) TCGA-64-1676-01 4 187077232 187077232 G T FAM149A Silent p.P154P 0.23 TCGA-64-1676-01 4 187627867 187627868 - A FAT1 Frame_Shift_Ins p.E1039* 0.25 TCGA-64-1676-01 4 188924008 188924008 G T ZFP42 Missense_Mutation p.G16V 0.16 deleterious(0) possibly_damaging(0.796) TCGA-64-1676-01 4 189020209 189020209 C A TRIML2 Missense_Mutation p.G151C 0.22 tolerated(0.16) benign(0.213) TCGA-64-1676-01 4 39314400 39314400 C A RFC1 Missense_Mutation p.R452L 0.27 deleterious(0) probably_damaging(0.984) TCGA-64-1676-01 4 44176686 44176686 C A KCTD8 3'UTR 0.29 TCGA-64-1676-01 4 44449622 44449622 C A KCTD8 Missense_Mutation p.D307Y 0.10 deleterious(0) possibly_damaging(0.894) TCGA-64-1676-01 4 47685848 47685848 G A CORIN Silent p.S307S 0.20 TCGA-64-1676-01 4 47939673 47939673 G C CNGA1 Missense_Mutation p.R349G 0.27 deleterious(0) probably_damaging(0.963) TCGA-64-1676-01 4 48584628 48584628 A T FRYL Silent p.R624R 0.23 TCGA-64-1676-01 4 56883961 56883961 C T CEP135 Missense_Mutation p.L984F 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-64-1676-01 4 66535351 66535351 C T EPHA5 Missense_Mutation p.R37Q 0.18 tolerated(0.34) benign(0.002) TCGA-64-1676-01 4 69100244 69100244 G T TMPRSS11B Missense_Mutation p.H136N 0.23 tolerated(0.12) benign(0.425) TCGA-64-1676-01 4 70346378 70346378 T C UGT2B4 Missense_Mutation p.T521A 0.24 tolerated(0.15) benign(0.012) TCGA-64-1676-01 4 74283925 74283925 G C ALB Missense_Mutation p.V517L 0.25 tolerated(0.21) benign(0.001) TCGA-64-1676-01 4 74441943 74441943 C A RASSF6 3'UTR 0.12 TCGA-64-1676-01 4 74702735 74702735 C T CXCL6 Missense_Mutation p.T55M 0.28 tolerated(0.07) benign(0.249) TCGA-64-1676-01 4 76714849 76714849 G T USO1 Missense_Mutation p.G418V 0.29 tolerated(0.2) benign(0.01) TCGA-64-1676-01 4 80246771 80246771 G T NAA11 Silent p.A87A 0.22 TCGA-64-1676-01 4 83417293 83417293 C T TMEM150C Silent p.P97P 0.25 TCGA-64-1676-01 4 87701591 87701591 T G PTPN13 Silent p.S1981S 0.13 TCGA-64-1676-01 4 89772323 89772323 G A FAM13A Silent p.S285S 0.21 TCGA-64-1676-01 4 90034726 90034726 G T TIGD2 Missense_Mutation p.G201W 0.31 deleterious(0) probably_damaging(0.945) TCGA-64-1676-01 4 90857151 90857151 A T MMRN1 Missense_Mutation p.T774S 0.25 tolerated(0.21) benign(0.019) TCGA-64-1676-01 4 9784629 9784629 C A DRD5 Missense_Mutation p.P326T 0.24 tolerated(0.2) benign(0.063) TCGA-64-1676-01 5 11022998 11022998 G T CTNND2 Missense_Mutation p.T961K 0.21 tolerated(0.09) benign(0.091) TCGA-64-1676-01 5 114611088 114611088 C A CCDC112 Missense_Mutation p.G248V 0.28 deleterious(0) probably_damaging(0.997) TCGA-64-1676-01 5 115346543 115346543 G T AQPEP Missense_Mutation p.R733S 0.33 tolerated(0.71) benign(0.011) TCGA-64-1676-01 5 118468880 118468880 G T DMXL1 Missense_Mutation p.G457C 0.25 deleterious(0.02) benign(0.008) TCGA-64-1676-01 5 126774191 126774191 C A MEGF10 Missense_Mutation p.A722D 0.29 deleterious(0) probably_damaging(0.945) TCGA-64-1676-01 5 126776495 126776495 C T MEGF10 Silent p.D766D 0.29 TCGA-64-1676-01 5 127727745 127727745 C A FBN2 Missense_Mutation p.M523I 0.31 tolerated(0.47) benign(0.269) TCGA-64-1676-01 5 127730885 127730885 C A FBN2 Missense_Mutation p.Q387H 0.35 deleterious(0.01) possibly_damaging(0.828) TCGA-64-1676-01 5 128324424 128324424 C A SLC27A6 Missense_Mutation p.L273M 0.28 tolerated(0.11) probably_damaging(0.976) TCGA-64-1676-01 5 128956400 128956400 G T ADAMTS19 Missense_Mutation p.G517V 0.29 tolerated(0.11) possibly_damaging(0.579) TCGA-64-1676-01 5 137235237 137235237 C T PKD2L2 Missense_Mutation p.P186L 0.40 tolerated(0.44) benign(0.315) TCGA-64-1676-01 5 140537567 140537567 G T PCDHB17 3'UTR 0.28 TCGA-64-1676-01 5 140559442 140559442 G T PCDHB8 Missense_Mutation p.K609N 0.28 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-64-1676-01 5 1422011 1422011 C A SLC6A3 Missense_Mutation p.G258C 0.37 deleterious(0) probably_damaging(0.999) TCGA-64-1676-01 5 15936573 15936573 A C FBXL7 Missense_Mutation p.T252P 0.34 deleterious(0.04) probably_damaging(0.938) TCGA-64-1676-01 5 161495054 161495054 C A GABRG2 Missense_Mutation p.P17T 0.40 deleterious_low_confidence(0.01) benign(0.096) TCGA-64-1676-01 5 167645208 167645208 C T TENM2 Missense_Mutation p.L1438F 0.38 deleterious(0) benign(0.216) TCGA-64-1676-01 5 168096927 168096927 C A SLIT3 Silent p.G1399G 0.31 TCGA-64-1676-01 5 178139390 178139390 T A ZNF354A Missense_Mutation p.N497Y 0.32 deleterious(0.01) probably_damaging(0.954) TCGA-64-1676-01 5 19747207 19747207 G - CDH18 Frame_Shift_Del p.H123Tfs*59 0.15 TCGA-64-1676-01 5 26915967 26915967 G A CDH9 Silent p.G98G 0.24 TCGA-64-1676-01 5 33643548 33643548 C A ADAMTS12 Missense_Mutation p.V503L 0.29 deleterious(0) probably_damaging(0.959) TCGA-64-1676-01 5 36686351 36686351 G T SLC1A3 Missense_Mutation p.D537Y 0.33 deleterious(0) benign(0.016) TCGA-64-1676-01 5 37703180 37703180 C G WDR70 Missense_Mutation p.I469M 0.11 deleterious(0) benign(0.326) TCGA-64-1676-01 5 40999785 40999785 G C MROH2B Missense_Mutation p.L1527V 0.26 deleterious(0.01) probably_damaging(0.977) TCGA-64-1676-01 5 54281167 54281167 C A ESM1 Missense_Mutation p.G60V 0.21 tolerated(0.06) benign(0.081) TCGA-64-1676-01 5 55406997 55406997 G T ANKRD55 Missense_Mutation p.H526Q 0.24 tolerated_low_confidence(0.06) benign(0.145) TCGA-64-1676-01 5 56212811 56212811 C A SETD9 3'UTR 0.24 TCGA-64-1676-01 5 64824289 64824289 T C CENPK Missense_Mutation p.K196R 0.27 tolerated(0.2) possibly_damaging(0.742) TCGA-64-1676-01 5 9063152 9063152 C A SEMA5A Missense_Mutation p.A789S 0.20 tolerated(0.68) benign(0.044) TCGA-64-1676-01 5 94014519 94014519 A T ANKRD32 Nonsense_Mutation p.K612* 0.27 TCGA-64-1676-01 6 101095256 101095256 C A ASCC3 Missense_Mutation p.R1108S 0.46 tolerated(0.14) benign(0.084) TCGA-64-1676-01 6 110757068 110757068 G T SLC22A16 Missense_Mutation p.P470T 0.22 deleterious(0) probably_damaging(0.943) TCGA-64-1676-01 6 117128061 117128061 G C GPRC6A Silent p.A269A 0.33 TCGA-64-1676-01 6 121768935 121768935 T G GJA1 Missense_Mutation p.S314R 0.27 tolerated(0.21) benign(0.023) TCGA-64-1676-01 6 129470172 129470172 C A LAMA2 Missense_Mutation p.Q320K 0.24 tolerated(0.28) benign(0.062) TCGA-64-1676-01 6 132693794 132693794 G T MOXD1 Missense_Mutation p.Q206K 0.19 tolerated(0.1) benign(0.338) TCGA-64-1676-01 6 136590641 136590641 C A BCLAF1 Missense_Mutation p.S718I 0.13 deleterious(0) possibly_damaging(0.607) TCGA-64-1676-01 6 139583834 139583834 G T TXLNB Missense_Mutation p.T255K 0.30 deleterious(0) probably_damaging(0.91) TCGA-64-1676-01 6 144854358 144854358 G T UTRN Missense_Mutation p.W2065C 0.21 deleterious(0) probably_damaging(1) TCGA-64-1676-01 6 167571250 167571250 C G GPR31 Missense_Mutation p.E24Q 0.24 deleterious(0) probably_damaging(0.996) TCGA-64-1676-01 6 169648571 169648571 G A THBS2 Nonsense_Mutation p.Q184* 0.22 TCGA-64-1676-01 6 25669751 25669751 T A SCGN Missense_Mutation p.Y117N 0.24 deleterious(0) probably_damaging(0.995) TCGA-64-1676-01 6 29523647 29523647 C A UBD 3'UTR 0.21 TCGA-64-1676-01 6 30652408 30652408 C G PPP1R18 Missense_Mutation p.G463A 0.40 tolerated_low_confidence(0.06) probably_damaging(1) TCGA-64-1676-01 6 30680116 30680116 T C MDC1 Missense_Mutation p.I535V 0.17 tolerated(1) benign(0.001) TCGA-64-1676-01 6 38758175 38758175 A G DNAH8 Silent p.L708L 0.33 TCGA-64-1676-01 6 39290313 39290313 G T KCNK16 Missense_Mutation p.P2T 0.33 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-64-1676-01 6 41036604 41036604 C A OARD1 Missense_Mutation p.G111V 0.33 deleterious(0.02) probably_damaging(0.96) TCGA-64-1676-01 6 43269342 43269342 G T SLC22A7 Missense_Mutation p.G325W 0.22 deleterious(0.02) possibly_damaging(0.851) TCGA-64-1676-01 6 44254167 44254167 C A TCTE1 Missense_Mutation p.S127I 0.09 deleterious(0) benign(0.071) TCGA-64-1676-01 6 44337843 44337843 A G SPATS1 Missense_Mutation p.I251V 0.21 tolerated(0.28) benign(0.023) TCGA-64-1676-01 6 47646847 47646847 C A GPR111 Missense_Mutation p.L150I 0.10 tolerated(0.08) probably_damaging(0.996) TCGA-64-1676-01 6 47759675 47759675 G T OPN5 Missense_Mutation p.D130Y 0.30 deleterious(0.03) probably_damaging(0.995) TCGA-64-1676-01 6 49806202 49806202 C G CRISP1 Missense_Mutation p.K190N 0.07 tolerated(0.36) benign(0.055) TCGA-64-1676-01 6 54214562 54214562 C A TINAG Silent p.T316T 0.24 TCGA-64-1676-01 6 55216293 55216293 C A GFRAL Missense_Mutation p.L205I 0.32 deleterious(0) probably_damaging(0.996) TCGA-64-1676-01 6 56472157 56472157 G A DST Intron 0.30 TCGA-64-1676-01 6 66053948 66053948 G T EYS Missense_Mutation p.H528N 0.19 tolerated(0.31) benign(0.004) TCGA-64-1676-01 6 69759227 69759227 G T BAI3 Missense_Mutation p.L774F 0.10 deleterious(0.01) possibly_damaging(0.686) TCGA-64-1676-01 6 75828759 75828759 C A COL12A1 Missense_Mutation p.G2452W 0.15 probably_damaging(1) TCGA-64-1676-01 6 75893229 75893229 C A COL12A1 Missense_Mutation p.R476S 0.25 benign(0.257) TCGA-64-1676-01 6 75899098 75899098 C A COL12A1 Splice_Site p.X220_splice 0.26 TCGA-64-1676-01 6 76023009 76023009 C A FILIP1 Missense_Mutation p.V847L 0.25 tolerated(0.52) benign(0.001) TCGA-64-1676-01 7 100373326 100373326 C A ZAN Silent p.S2020S 0.10 TCGA-64-1676-01 7 100373327 100373327 C A ZAN Missense_Mutation p.Q2021K 0.10 unknown(0) TCGA-64-1676-01 7 100417356 100417356 C A EPHB4 Missense_Mutation p.G374W 0.28 deleterious(0) probably_damaging(0.973) TCGA-64-1676-01 7 100675547 100675547 G A MUC17 Missense_Mutation p.V284M 0.12 benign(0.012) TCGA-64-1676-01 7 100678561 100678561 G T MUC17 Silent p.T1288T 0.17 TCGA-64-1676-01 7 100683947 100683947 A G MUC17 Missense_Mutation p.S3084G 0.19 probably_damaging(0.914) TCGA-64-1676-01 7 101892232 101892232 G T CUX1 Silent p.L1487L 0.33 TCGA-64-1676-01 7 101944560 101944560 C T SH2B2 Silent p.P285P 0.20 TCGA-64-1676-01 7 1026291 1026291 T A CYP2W1 Missense_Mutation p.L226Q 0.16 deleterious(0) probably_damaging(0.961) TCGA-64-1676-01 7 103275876 103275876 G T RELN Missense_Mutation p.P821T 0.24 tolerated(0.09) possibly_damaging(0.873) TCGA-64-1676-01 7 106513259 106513259 G T PIK3CG Silent p.L721L 0.26 TCGA-64-1676-01 7 107834586 107834586 A T NRCAM Missense_Mutation p.Y554N 0.22 tolerated(1) benign(0.039) TCGA-64-1676-01 7 11418944 11418944 A T THSD7A Intron 0.14 TCGA-64-1676-01 7 120608099 120608099 G C ING3 Missense_Mutation p.G223A 0.26 tolerated(0.85) probably_damaging(0.991) TCGA-64-1676-01 7 121652315 121652315 C A PTPRZ1 Missense_Mutation p.P1072H 0.21 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-64-1676-01 7 124386510 124386510 T C GPR37 3'UTR 0.17 TCGA-64-1676-01 7 126173167 126173167 T C GRM8 Missense_Mutation p.I757V 0.19 tolerated(0.49) probably_damaging(0.994) TCGA-64-1676-01 7 131864655 131864655 G T PLXNA4 Missense_Mutation p.S1222Y 0.25 deleterious(0.03) probably_damaging(0.987) TCGA-64-1676-01 7 132192299 132192299 C A PLXNA4 Missense_Mutation p.W385L 0.19 deleterious(0.01) probably_damaging(1) TCGA-64-1676-01 7 134552466 134552466 C A CALD1 5'UTR 0.15 TCGA-64-1676-01 7 137151659 137151659 C T DGKI Splice_Site p.X833_splice 0.13 TCGA-64-1676-01 7 137172361 137172361 G A DGKI Nonsense_Mutation p.Q793* 0.19 TCGA-64-1676-01 7 138768597 138768597 G A ZC3HAV1 Missense_Mutation p.P209L 0.25 tolerated(0.13) probably_damaging(0.981) TCGA-64-1676-01 7 142099485 142099485 G T TRBV7-8 Missense_Mutation p.S106Y 0.14 deleterious(0) probably_damaging(0.979) TCGA-64-1676-01 7 142206927 142206927 A G TRBV10-2 Missense_Mutation p.C12R 0.22 deleterious(0.01) benign(0.367) TCGA-64-1676-01 7 142247121 142247121 G T TRBV7-3 Missense_Mutation p.A112D 0.17 TCGA-64-1676-01 7 142566456 142566456 G T EPHB6 Nonsense_Mutation p.E749* 0.23 TCGA-64-1676-01 7 143141256 143141256 C G TAS2R60 Silent p.P237P 0.25 TCGA-64-1676-01 7 148921335 148921335 C T ZNF282 Missense_Mutation p.R538C 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-64-1676-01 7 148964289 148964289 G A ZNF783 Missense_Mutation p.G217R 0.26 tolerated(0.22) benign(0.042) TCGA-64-1676-01 7 149191498 149191499 - C ZNF746 Frame_Shift_Ins p.M41Dfs*8 0.19 TCGA-64-1676-01 7 149486458 149486458 G T SSPO RNA 0.17 TCGA-64-1676-01 7 150174417 150174417 G T GIMAP8 Missense_Mutation p.R516L 0.28 tolerated(0.11) benign(0.297) TCGA-64-1676-01 7 15430314 15430314 A T AGMO Missense_Mutation p.F268L 0.14 deleterious(0) probably_damaging(0.915) TCGA-64-1676-01 7 15601532 15601532 C A AGMO 5'UTR 0.17 TCGA-64-1676-01 7 158494630 158494630 C A NCAPG2 Splice_Site 0.23 TCGA-64-1676-01 7 158531731 158531731 C G ESYT2 Silent p.V777V 0.17 TCGA-64-1676-01 7 19184711 19184711 G T FERD3L Missense_Mutation p.P92H 0.21 deleterious(0.02) possibly_damaging(0.88) TCGA-64-1676-01 7 27181480 27181480 C A HOXA5 Missense_Mutation p.A263S 0.09 tolerated(0.41) benign(0.074) TCGA-64-1676-01 7 29727032 29727032 A T DPY19L2P3 Intron 0.14 TCGA-64-1676-01 7 35709856 35709856 C T HERPUD2 Missense_Mutation p.S103N 0.06 tolerated(0.38) benign(0) TCGA-64-1676-01 7 38305252 38305252 G T TRGC1 Missense_Mutation p.P10H 0.12 deleterious(0) probably_damaging(1) TCGA-64-1676-01 7 38471793 38471793 C A AMPH Missense_Mutation p.W385L 0.21 deleterious(0) benign(0.399) TCGA-64-1676-01 7 43436451 43436451 A G HECW1 Silent p.G198G 0.10 TCGA-64-1676-01 7 43447307 43447307 G T HECW1 Missense_Mutation p.V260L 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-64-1676-01 7 43918478 43918478 T A URGCP Missense_Mutation p.D195V 0.31 deleterious(0) probably_damaging(0.999) TCGA-64-1676-01 7 47869180 47869180 C T PKD1L1 Missense_Mutation p.G2193D 0.12 tolerated(0.07) possibly_damaging(0.741) TCGA-64-1676-01 7 50121455 50121455 C A ZPBP Silent p.V83V 0.27 TCGA-64-1676-01 7 53104085 53104085 G T POM121L12 Missense_Mutation p.G241C 0.25 tolerated(0.21) probably_damaging(0.995) TCGA-64-1676-01 7 63726618 63726618 C A ZNF679 Missense_Mutation p.Q203K 0.44 tolerated(1) probably_damaging(0.919) TCGA-64-1676-01 7 64023483 64023483 C A ZNF680 5'UTR 0.38 TCGA-64-1676-01 7 73101344 73101344 G T WBSCR22 Missense_Mutation p.R94L 0.17 deleterious(0) probably_damaging(1) TCGA-64-1676-01 7 73768231 73768231 G T CLIP2 Missense_Mutation p.V234L 0.20 deleterious(0) probably_damaging(0.999) TCGA-64-1676-01 7 7612174 7612174 C A MIOS Nonsense_Mutation p.S23* 0.13 TCGA-64-1676-01 7 81388081 81388081 C A HGF Missense_Mutation p.W98C 0.15 tolerated(0.07) probably_damaging(0.998) TCGA-64-1676-01 7 81978919 81978919 C A CACNA2D1 Missense_Mutation p.A48S 0.21 tolerated(0.22) benign(0.311) TCGA-64-1676-01 7 82581394 82581394 C A PCLO Missense_Mutation p.A2959S 0.20 unknown(0) TCGA-64-1676-01 7 88965693 88965693 G T ZNF804B Nonsense_Mutation p.E1133* 0.21 TCGA-64-1676-01 7 95818951 95818951 C A SLC25A13 Missense_Mutation p.V264F 0.17 tolerated(0.21) benign(0.052) TCGA-64-1676-01 8 101253240 101253240 A G SPAG1 Missense_Mutation p.Y924C 0.40 deleterious(0) probably_damaging(0.998) TCGA-64-1676-01 8 113504881 113504881 G T CSMD3 Silent p.G1705G 0.36 TCGA-64-1676-01 8 113529424 113529424 C A CSMD3 Missense_Mutation p.G1532V 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-64-1676-01 8 113988231 113988231 C A CSMD3 Nonsense_Mutation p.E393* 0.18 TCGA-64-1676-01 8 118174010 118174010 C A SLC30A8 Silent p.G202G 0.11 TCGA-64-1676-01 8 121220515 121220515 G A COL14A1 Silent p.L412L 0.33 TCGA-64-1676-01 8 125109517 125109517 C T FER1L6 Silent p.R1567R 0.38 TCGA-64-1676-01 8 131964130 131964130 G C ADCY8 Missense_Mutation p.R409G 0.27 deleterious(0.01) probably_damaging(0.912) TCGA-64-1676-01 8 143994002 143994002 G T CYP11B2 Missense_Mutation p.R448S 0.14 deleterious(0) probably_damaging(0.996) TCGA-64-1676-01 8 1513999 1513999 G T DLGAP2 Missense_Mutation p.A381S 0.38 tolerated(0.21) benign(0.005) TCGA-64-1676-01 8 16850805 16850805 T A FGF20 Missense_Mutation p.I138F 0.06 tolerated(0.27) possibly_damaging(0.523) TCGA-64-1676-01 8 21768283 21768283 C G DOK2 Silent p.R173R 0.25 TCGA-64-1676-01 8 26721658 26721658 C G ADRA1A Missense_Mutation p.V277L 0.31 deleterious(0) probably_damaging(0.999) TCGA-64-1676-01 8 2808659 2808659 G T CSMD1 Nonsense_Mutation p.S3393* 0.21 TCGA-64-1676-01 8 68030483 68030483 G C CSPP1 Missense_Mutation p.R494S 0.28 deleterious(0.01) benign(0.077) TCGA-64-1676-01 8 70981552 70981552 G T PRDM14 Missense_Mutation p.P182T 0.31 tolerated(0.06) benign(0.141) TCGA-64-1676-01 8 72968044 72968044 C G TRPA1 Missense_Mutation p.C414S 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-64-1676-01 8 76452274 76452274 C A HNF4G Missense_Mutation p.T16N 0.26 deleterious(0.04) benign(0.273) TCGA-64-1676-01 8 7698705 7698705 A T DEFB104A Missense_Mutation p.T70S 0.11 tolerated_low_confidence(0.16) possibly_damaging(0.636) TCGA-64-1676-01 8 77763833 77763833 A T ZFHX4 Missense_Mutation p.H1559L 0.24 benign(0.402) TCGA-64-1676-01 8 81905543 81905543 C A PAG1 Splice_Site 0.36 TCGA-64-1676-01 8 82355610 82355610 C A PMP2 3'UTR 0.24 TCGA-64-1676-01 8 87076322 87076322 C A PSKH2 Missense_Mutation p.A242S 0.26 tolerated(0.19) benign(0.206) TCGA-64-1676-01 8 88885855 88885855 G T DCAF4L2 Nonsense_Mutation p.Y115* 0.21 TCGA-64-1676-01 8 93004039 93004039 G T RUNX1T1 Silent p.G284G 0.27 TCGA-64-1676-01 8 95412526 95412526 C T RAD54B Nonsense_Mutation p.W370* 0.36 TCGA-64-1676-01 8 97797421 97797421 G T CPQ Missense_Mutation p.G99V 0.32 deleterious(0) probably_damaging(0.937) TCGA-64-1676-01 8 97892084 97892084 A T CPQ Missense_Mutation p.I234F 0.37 deleterious(0) probably_damaging(0.925) TCGA-64-1676-01 9 101904899 101904899 C T TGFBR1 Missense_Mutation p.T296I 0.05 tolerated(0.08) probably_damaging(0.997) TCGA-64-1676-01 9 101980430 101980430 G A ALG2 Missense_Mutation p.S346L 0.09 deleterious(0) probably_damaging(0.97) TCGA-64-1676-01 9 1056129 1056129 C A DMRT2 Intron 0.19 TCGA-64-1676-01 9 107267441 107267441 G T OR13F1 Missense_Mutation p.A300S 0.10 deleterious(0.01) benign(0.022) TCGA-64-1676-01 9 107332060 107332060 G T OR13C8 Silent p.L204L 0.19 TCGA-64-1676-01 9 112003752 112003752 C G EPB41L4B Intron 0.48 TCGA-64-1676-01 9 113221313 113221313 C A SVEP1 Missense_Mutation p.A1135S 0.12 benign(0.006) TCGA-64-1676-01 9 114090287 114090287 G T OR2K2 Silent p.R143R 0.54 TCGA-64-1676-01 9 116303913 116303913 G T RGS3 Intron 0.55 TCGA-64-1676-01 9 117139580 117139580 C A AKNA Missense_Mutation p.R169S 0.47 tolerated(0.5) benign(0.007) TCGA-64-1676-01 9 118969862 118969862 G A PAPPA Missense_Mutation p.E536K 0.42 deleterious(0) possibly_damaging(0.621) TCGA-64-1676-01 9 118982315 118982315 C A PAPPA Missense_Mutation p.A673E 0.30 deleterious(0.01) benign(0.024) TCGA-64-1676-01 9 123170627 123170627 C A CDK5RAP2 Missense_Mutation p.R1575I 0.09 deleterious(0.01) probably_damaging(0.944) TCGA-64-1676-01 9 130941294 130941294 C A CIZ1 Nonsense_Mutation p.E398* 0.06 TCGA-64-1676-01 9 130941545 130941545 C G CIZ1 Missense_Mutation p.R314P 0.25 deleterious_low_confidence(0) possibly_damaging(0.9) TCGA-64-1676-01 9 134151627 134151627 A G FAM78A 5'UTR 0.24 TCGA-64-1676-01 9 135206746 135206746 C T SETX Missense_Mutation p.D310N 0.19 deleterious(0) probably_damaging(1) TCGA-64-1676-01 9 135940095 135940095 G - CEL Frame_Shift_Del p.D100Mfs*25 0.22 TCGA-64-1676-01 9 138378101 138378101 T G PPP1R26 Missense_Mutation p.L582R 0.34 tolerated(0.31) probably_damaging(0.955) TCGA-64-1676-01 9 138586907 138586907 C T SOHLH1 Silent p.A288A 0.11 TCGA-64-1676-01 9 139877834 139877834 G T LCNL1 5'UTR 0.29 TCGA-64-1676-01 9 18639359 18639359 A C ADAMTSL1 Missense_Mutation p.K262Q 0.09 deleterious(0.01) possibly_damaging(0.607) TCGA-64-1676-01 9 37744666 37744666 A C FRMPD1 Silent p.A879A 0.15 TCGA-64-1676-01 9 37746032 37746032 A T FRMPD1 Missense_Mutation p.S1335C 0.14 deleterious(0) probably_damaging(0.959) TCGA-64-1676-01 9 4712780 4712780 G C AK3 3'UTR 0.50 TCGA-64-1676-01 9 5231684 5231684 C T INSL4 Missense_Mutation p.P54L 0.48 tolerated(0.24) benign(0.087) TCGA-64-1676-01 9 73253977 73253977 G T TRPM3 Missense_Mutation p.T527K 0.19 deleterious(0) probably_damaging(0.999) TCGA-64-1676-01 9 74327059 74327059 C A TMEM2 Missense_Mutation p.M903I 0.16 deleterious(0.01) benign(0.005) TCGA-64-1676-01 9 75387409 75387409 G A TMC1 Silent p.P274P 0.20 TCGA-64-1676-01 9 77378052 77378052 T C TRPM6 Splice_Site p.X1179_splice 0.17 TCGA-64-1676-01 9 77423091 77423091 C A TRPM6 Splice_Site p.X500_splice 0.21 TCGA-64-1676-01 9 85905627 85905627 C G FRMD3 Missense_Mutation p.Q362H 0.24 tolerated(0.29) benign(0.016) TCGA-64-1676-01 9 86559805 86559805 T A C9orf64 Missense_Mutation p.S233C 0.09 tolerated(0.26) benign(0.035) TCGA-64-1676-01 X 101152935 101152935 C A ZMAT1 Missense_Mutation p.Q137H 0.66 tolerated(0.35) benign(0.015) TCGA-64-1676-01 X 101153123 101153123 T A ZMAT1 Missense_Mutation p.K100M 0.34 deleterious(0) possibly_damaging(0.867) TCGA-64-1676-01 X 104465059 104465059 G C TEX13A Missense_Mutation p.P8R 0.45 deleterious(0.04) benign(0.434) TCGA-64-1676-01 X 118284406 118284406 C A KIAA1210 Missense_Mutation p.C46F 0.49 deleterious_low_confidence(0) benign(0.271) TCGA-64-1676-01 X 122755273 122755273 G A THOC2 Silent p.T1317T 0.55 TCGA-64-1676-01 X 12734443 12734443 A G FRMPD4 Missense_Mutation p.Y622C 0.29 tolerated_low_confidence(0.1) possibly_damaging(0.832) TCGA-64-1676-01 X 130678094 130678094 G T OR13H1 Missense_Mutation p.G16V 0.17 deleterious(0) probably_damaging(0.997) TCGA-64-1676-01 X 132439938 132439938 C A GPC4 Missense_Mutation p.Q339H 0.37 deleterious(0.01) possibly_damaging(0.452) TCGA-64-1676-01 X 135428122 135428122 G T GPR112 Nonsense_Mutation p.E753* 0.63 TCGA-64-1676-01 X 135730460 135730460 C G CD40LG Missense_Mutation p.P18R 0.65 deleterious(0) possibly_damaging(0.456) TCGA-64-1676-01 X 137715045 137715045 C G FGF13 Missense_Mutation p.G245A 0.62 tolerated_low_confidence(0.05) benign(0.083) TCGA-64-1676-01 X 140969330 140969330 G T MAGEC3 Silent p.T219T 0.20 TCGA-64-1676-01 X 140984396 140984396 C G MAGEC3 Intron 0.63 TCGA-64-1676-01 X 140985421 140985421 C A MAGEC3 Missense_Mutation p.Q579K 0.70 tolerated(0.1) benign(0.286) TCGA-64-1676-01 X 142596702 142596702 T C SPANXN3 Missense_Mutation p.Q123R 0.39 tolerated_low_confidence(0.05) possibly_damaging(0.901) TCGA-64-1676-01 X 150840994 150840994 G T PASD1 Missense_Mutation p.V593L 0.41 tolerated(0.56) benign(0.012) TCGA-64-1676-01 X 150912077 150912077 G A CNGA2 Missense_Mutation p.V368M 0.50 tolerated(0.05) probably_damaging(1) TCGA-64-1676-01 X 153227748 153227748 G A HCFC1 Missense_Mutation p.T241M 0.30 deleterious(0.01) possibly_damaging(0.85) TCGA-64-1676-01 X 1719992 1719992 G T AKAP17A Silent p.V531V 0.11 TCGA-64-1676-01 X 23018528 23018528 C T DDX53 Silent p.S118S 0.32 TCGA-64-1676-01 X 2936699 2936699 G T ARSH Missense_Mutation p.D297Y 0.21 deleterious(0) probably_damaging(1) TCGA-64-1676-01 X 30254905 30254905 C T MAGEB3 Silent p.V288V 0.19 TCGA-64-1676-01 X 3228247 3228247 T A MXRA5 Missense_Mutation p.Q2666L 0.28 tolerated(0.19) benign(0.281) TCGA-64-1676-01 X 3248432 3248432 G T MXRA5 Nonsense_Mutation p.Y112* 0.35 TCGA-64-1676-01 X 38146132 38146132 C G RPGR Missense_Mutation p.G707A 0.25 unknown(0) TCGA-64-1676-01 X 47032551 47032551 G T RBM10 Missense_Mutation p.G153C 0.39 deleterious(0) probably_damaging(0.947) TCGA-64-1676-01 X 47426307 47426307 G T ARAF Missense_Mutation p.D242Y 0.32 deleterious(0.05) benign(0.091) TCGA-64-1676-01 X 68381607 68381607 T A PJA1 Missense_Mutation p.D492V 0.39 deleterious(0.02) probably_damaging(0.998) TCGA-64-1676-01 X 73961382 73961382 T C KIAA2022 Missense_Mutation p.S1004G 0.19 deleterious(0) benign(0.414) TCGA-64-1676-01 X 77245130 77245130 G T ATP7A Missense_Mutation p.V338L 0.59 tolerated(1) benign(0.007) TCGA-64-1676-01 X 91131866 91131866 G T PCDH11X Missense_Mutation p.R209S 0.65 deleterious(0) probably_damaging(1) TCGA-64-1676-01 X 91873373 91873373 C A PCDH11X Missense_Mutation p.H1160N 0.55 tolerated_low_confidence(0.47) benign(0) TCGA-64-1679-01 10 101595910 101595910 C A ABCC2 Silent p.I1159I 0.09 TCGA-64-1679-01 10 103912065 103912065 C G NOLC1 5'UTR 0.17 TCGA-64-1679-01 10 106675691 106675691 G A SORCS3 Splice_Site p.X265_splice 0.14 TCGA-64-1679-01 10 108412220 108412220 C T SORCS1 Missense_Mutation p.G799R 0.19 deleterious(0.01) probably_damaging(1) TCGA-64-1679-01 10 112745436 112745436 C T SHOC2 Missense_Mutation p.H252Y 0.07 tolerated(0.3) possibly_damaging(0.86) TCGA-64-1679-01 10 117884798 117884798 T C GFRA1 Missense_Mutation p.Y235C 0.14 deleterious(0) probably_damaging(0.998) TCGA-64-1679-01 10 118202628 118202628 C A PNLIPRP3 Missense_Mutation p.T89N 0.09 deleterious(0) probably_damaging(0.998) TCGA-64-1679-01 10 125426472 125426472 C A GPR26 Silent p.L183L 0.12 TCGA-64-1679-01 10 135184202 135184202 T A ECHS1 Missense_Mutation p.I50F 0.25 deleterious(0) probably_damaging(0.978) TCGA-64-1679-01 10 15255469 15255469 C A FAM171A1 Silent p.R706R 0.25 TCGA-64-1679-01 10 18266980 18266980 G T SLC39A12 Missense_Mutation p.D301Y 0.25 deleterious(0.01) benign(0.345) TCGA-64-1679-01 10 20465966 20465966 G T PLXDC2 Nonsense_Mutation p.E308* 0.08 TCGA-64-1679-01 10 26455006 26455006 C A MYO3A Missense_Mutation p.L1004I 0.05 tolerated(0.21) possibly_damaging(0.57) TCGA-64-1679-01 10 26581395 26581395 G A GAD2 Missense_Mutation p.G463E 0.10 deleterious(0) probably_damaging(1) TCGA-64-1679-01 10 35437333 35437333 G T CREM Nonsense_Mutation p.G28* 0.09 TCGA-64-1679-01 10 69571290 69571290 C A DNAJC12 Missense_Mutation p.V97L 0.30 deleterious(0.03) benign(0.009) TCGA-64-1679-01 10 82036222 82036222 G T MAT1A Silent p.V226V 0.20 TCGA-64-1679-01 10 96698419 96698419 T A CYP2C9 5'Flank 0.08 TCGA-64-1679-01 10 98129868 98129868 C A TLL2 Missense_Mutation p.G956V 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-64-1679-01 11 103908369 103908369 C A DDI1 Silent p.A273A 0.31 TCGA-64-1679-01 11 116661395 116661395 T G APOA5 Missense_Mutation p.T184P 0.18 deleterious(0) probably_damaging(0.991) TCGA-64-1679-01 11 123900680 123900680 G T OR10G8 Missense_Mutation p.M117I 0.39 deleterious(0) probably_damaging(0.993) TCGA-64-1679-01 11 124487256 124487256 C A PANX3 Missense_Mutation p.S137R 0.47 tolerated(0.4) possibly_damaging(0.459) TCGA-64-1679-01 11 128781592 128781592 T G KCNJ5 Missense_Mutation p.F142V 0.37 deleterious(0) probably_damaging(1) TCGA-64-1679-01 11 128839708 128839708 C A ARHGAP32 Silent p.G1786G 0.39 TCGA-64-1679-01 11 32953390 32953390 T A QSER1 Missense_Mutation p.F67I 0.41 deleterious(0) probably_damaging(0.982) TCGA-64-1679-01 11 35223312 35223312 G A CD44 Silent p.E377E 0.34 TCGA-64-1679-01 11 43465675 43465675 G C TTC17 Missense_Mutation p.E861Q 0.33 tolerated(0.14) benign(0.177) TCGA-64-1679-01 11 4471034 4471034 G T OR52K2 Silent p.V155V 0.37 TCGA-64-1679-01 11 46727337 46727337 C A ZNF408 Missense_Mutation p.P696H 0.40 tolerated(0.29) benign(0.002) TCGA-64-1679-01 11 4703209 4703209 C T OR51E2 Missense_Mutation p.G245S 0.29 deleterious(0.03) benign(0.004) TCGA-64-1679-01 11 5255616 5255616 C A HBD Missense_Mutation p.W16C 0.41 deleterious(0) probably_damaging(0.992) TCGA-64-1679-01 11 55135827 55135827 G T OR4A15 Missense_Mutation p.K156N 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.776) TCGA-64-1679-01 11 58482866 58482866 C A GLYAT Nonsense_Mutation p.G38* 0.22 TCGA-64-1679-01 11 59481200 59481200 C A OR10V1 Missense_Mutation p.G40V 0.40 tolerated(0.39) benign(0.001) TCGA-64-1679-01 11 61897761 61897761 G T INCENP Silent p.A254A 0.39 TCGA-64-1679-01 11 62299271 62299271 C A AHNAK Missense_Mutation p.W873L 0.31 benign(0.109) TCGA-64-1679-01 11 64564575 64564575 C T MAP4K2 Splice_Site p.X455_splice 0.28 TCGA-64-1679-01 11 65780862 65780862 G T CST6 Silent p.V147V 0.32 TCGA-64-1679-01 11 68506136 68506136 T A MTL5 Intron 0.31 TCGA-64-1679-01 11 7070936 7070936 G A NLRP14 Missense_Mutation p.D720N 0.30 tolerated(0.42) benign(0.008) TCGA-64-1679-01 11 77639510 77639510 C G INTS4 Missense_Mutation p.V417L 0.29 deleterious(0.01) possibly_damaging(0.573) TCGA-64-1679-01 11 88780894 88780894 C G GRM5 Silent p.V49V 0.10 TCGA-64-1679-01 11 92531099 92531099 C T FAT3 Silent p.S1640S 0.26 TCGA-64-1679-01 11 94226032 94226032 C A MRE11A 5'UTR 0.35 TCGA-64-1679-01 12 100784891 100784891 C A SLC17A8 Missense_Mutation p.A156D 0.18 deleterious(0.01) probably_damaging(0.982) TCGA-64-1679-01 12 104056673 104056673 C A STAB2 Missense_Mutation p.A640D 0.18 deleterious(0) probably_damaging(1) TCGA-64-1679-01 12 104089331 104089331 C A STAB2 Missense_Mutation p.L1127M 0.09 deleterious(0) probably_damaging(1) TCGA-64-1679-01 12 108589949 108589949 G T WSCD2 Missense_Mutation p.A114S 0.12 tolerated(0.17) benign(0.043) TCGA-64-1679-01 12 109724509 109724509 T A FOXN4 Missense_Mutation p.S213C 0.28 deleterious(0.03) probably_damaging(0.979) TCGA-64-1679-01 12 10978098 10978098 C A TAS2R10 Silent p.L257L 0.12 TCGA-64-1679-01 12 117662918 117662918 C A NOS1 Silent p.R1277R 0.16 TCGA-64-1679-01 12 117662919 117662919 C A NOS1 Missense_Mutation p.R1277L 0.14 tolerated(0.12) benign(0.007) TCGA-64-1679-01 12 132466659 132466659 A T EP400 Missense_Mutation p.Q522L 0.15 unknown(0) TCGA-64-1679-01 12 2742805 2742805 G T CACNA1C Missense_Mutation p.S1300I 0.12 deleterious(0.04) benign(0.005) TCGA-64-1679-01 12 2763057 2763057 C A CACNA1C Silent p.I1425I 0.20 TCGA-64-1679-01 12 31944778 31944778 T A H3F3C Missense_Mutation p.N108I 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-64-1679-01 12 44124111 44124111 C T PUS7L 3'UTR 0.17 TCGA-64-1679-01 12 49373341 49373341 C A WNT1 Missense_Mutation p.S65R 0.13 tolerated(0.17) possibly_damaging(0.889) TCGA-64-1679-01 12 49433751 49433751 G A KMT2D Missense_Mutation p.T2601I 0.33 possibly_damaging(0.78) TCGA-64-1679-01 12 49580492 49580492 C A TUBA1A Missense_Mutation p.G43V 0.19 deleterious_low_confidence(0.01) benign(0.018) TCGA-64-1679-01 12 52843597 52843597 G C KRT6B Missense_Mutation p.A286G 0.10 tolerated(0.14) benign(0.346) TCGA-64-1679-01 12 53007601 53007601 C G KRT73 Silent p.T285T 0.16 TCGA-64-1679-01 12 53091651 53091651 C A KRT77 Silent p.V191V 0.16 TCGA-64-1679-01 12 54379646 54379646 C A HOXC10 Silent p.T201T 0.17 TCGA-64-1679-01 12 54379647 54379647 C A HOXC10 Missense_Mutation p.P202T 0.17 tolerated(0.46) benign(0.018) TCGA-64-1679-01 12 54447898 54447898 G T HOXC4 Missense_Mutation p.E64D 0.19 tolerated(0.09) benign(0.001) TCGA-64-1679-01 12 5603480 5603480 C A NTF3 Missense_Mutation p.L47I 0.15 tolerated(0.06) possibly_damaging(0.899) TCGA-64-1679-01 12 64588160 64588160 G C C12orf66 Missense_Mutation p.A267G 0.19 deleterious(0.02) benign(0.166) TCGA-64-1679-01 12 6839882 6839882 C T COPS7A Silent p.A228A 0.22 TCGA-64-1679-01 12 71977581 71977581 G T LGR5 Silent p.G597G 0.20 TCGA-64-1679-01 12 73014906 73014907 - T TRHDE Frame_Shift_Ins p.A786Cfs*13 0.21 TCGA-64-1679-01 12 79679579 79679579 C A SYT1 Missense_Mutation p.A60D 0.11 deleterious(0) probably_damaging(0.98) TCGA-64-1679-01 12 80658799 80658799 G T OTOGL Missense_Mutation p.C669F 0.17 deleterious(0) probably_damaging(0.994) TCGA-64-1679-01 12 85279265 85279265 G T SLC6A15 Missense_Mutation p.Q175K 0.16 tolerated(0.24) benign(0.077) TCGA-64-1679-01 13 101944629 101944629 C A NALCN Missense_Mutation p.W296C 0.36 deleterious(0) probably_damaging(0.994) TCGA-64-1679-01 13 101944630 101944630 C A NALCN Missense_Mutation p.W296L 0.34 deleterious(0.01) probably_damaging(0.953) TCGA-64-1679-01 13 103705019 103705019 C A SLC10A2 Missense_Mutation p.G179V 0.21 deleterious(0) probably_damaging(1) TCGA-64-1679-01 13 38158979 38158980 - A POSTN Frame_Shift_Ins p.T328Yfs*3 0.23 TCGA-64-1679-01 13 39343846 39343846 G A FREM2 Missense_Mutation p.E1848K 0.12 deleterious(0.01) probably_damaging(1) TCGA-64-1679-01 13 73357591 73357591 G T PIBF1 5'UTR 0.24 TCGA-64-1679-01 14 102891368 102891368 C G TECPR2 Missense_Mutation p.L231V 0.28 tolerated(0.11) probably_damaging(0.998) TCGA-64-1679-01 14 20665591 20665591 A T OR11G2 Missense_Mutation p.R33W 0.21 deleterious(0) possibly_damaging(0.71) TCGA-64-1679-01 14 20665719 20665719 G T OR11G2 Silent p.L75L 0.20 TCGA-64-1679-01 14 20849471 20849471 C A TEP1 Splice_Site p.X1549_splice 0.25 TCGA-64-1679-01 14 21549125 21549125 G T ARHGEF40 Missense_Mutation p.V864F 0.15 tolerated(0.41) benign(0.221) TCGA-64-1679-01 14 24709508 24709508 G A TINF2 Silent p.L364L 0.08 TCGA-64-1679-01 14 24724007 24724007 C A TGM1 Missense_Mutation p.A651S 0.23 tolerated(0.73) benign(0.02) TCGA-64-1679-01 14 33014693 33014693 T A AKAP6 Silent p.A278A 0.25 TCGA-64-1679-01 14 33684570 33684570 A C NPAS3 Missense_Mutation p.N108T 0.26 tolerated(0.45) benign(0.403) TCGA-64-1679-01 14 35243648 35243648 G T BAZ1A Missense_Mutation p.S961Y 0.14 deleterious(0.02) probably_damaging(0.962) TCGA-64-1679-01 14 36225998 36225998 C A RALGAPA1 Splice_Site p.X221_splice 0.05 TCGA-64-1679-01 14 37754522 37754522 G T MIPOL1 Splice_Site p.X165_splice 0.23 TCGA-64-1679-01 14 42355965 42355965 C A LRFN5 Missense_Mutation p.P46Q 0.19 deleterious(0) probably_damaging(1) TCGA-64-1679-01 14 61451499 61451499 G T SLC38A6 Silent p.L96L 0.20 TCGA-64-1679-01 14 93712551 93712551 C A BTBD7 Missense_Mutation p.V735L 0.24 deleterious_low_confidence(0.05) benign(0.034) TCGA-64-1679-01 14 94089109 94089109 G T UNC79 Missense_Mutation p.A1667S 0.23 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-64-1679-01 14 94156483 94156483 G T UNC79 Missense_Mutation p.C2231F 0.24 deleterious(0) probably_damaging(0.998) TCGA-64-1679-01 14 95922038 95922038 C A SYNE3 Missense_Mutation p.R271S 0.11 tolerated(0.7) benign(0) TCGA-64-1679-01 15 25336954 25336954 C A SNORD116-23 RNA 0.13 TCGA-64-1679-01 15 25463705 25463705 G T SNORD115-27 5'Flank 0.11 TCGA-64-1679-01 15 25488596 25488596 T A SNORD115-40 5'Flank 0.14 TCGA-64-1679-01 15 28096612 28096612 G T OCA2 Missense_Mutation p.L752I 0.22 tolerated(0.23) benign(0.17) TCGA-64-1679-01 15 34396468 34396468 A T PGBD4 Missense_Mutation p.Y579F 0.28 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-64-1679-01 15 35202392 35202392 C T AQR Missense_Mutation p.R536H 0.21 deleterious(0.01) possibly_damaging(0.764) TCGA-64-1679-01 15 43374882 43374882 C G UBR1 Missense_Mutation p.C124S 0.06 deleterious(0) probably_damaging(0.992) TCGA-64-1679-01 15 43638085 43638086 TT - ADAL Frame_Shift_Del p.L154Sfs*17 0.10 TCGA-64-1679-01 15 48053408 48053408 C A SEMA6D Silent p.G112G 0.10 TCGA-64-1679-01 15 48577447 48577447 G T SLC12A1 Splice_Site p.X877_splice 0.26 TCGA-64-1679-01 15 51514613 51514613 C G CYP19A1 Silent p.V187V 0.19 TCGA-64-1679-01 15 56208095 56208095 C A NEDD4 Missense_Mutation p.G312V 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.463) TCGA-64-1679-01 15 57731566 57731566 G T CGNL1 Missense_Mutation p.A457S 0.29 tolerated(0.56) benign(0.003) TCGA-64-1679-01 15 62161820 62161820 C G VPS13C Missense_Mutation p.A3543P 0.11 deleterious(0.01) probably_damaging(1) TCGA-64-1679-01 15 74427168 74427168 G C ISLR2 Missense_Mutation p.Q691H 0.06 deleterious(0.01) benign(0.44) TCGA-64-1679-01 15 76075256 76075256 G T RN7SL319P 5'Flank 0.23 TCGA-64-1679-01 15 79229742 79229742 C T CTSH Silent p.E49E 0.25 TCGA-64-1679-01 15 79294032 79294032 G C RASGRF1 Silent p.P865P 0.16 TCGA-64-1679-01 15 79614470 79614470 C T TMED3 Silent p.L190L 0.19 TCGA-64-1679-01 15 84651157 84651157 C A ADAMTSL3 Missense_Mutation p.P926H 0.12 deleterious(0) probably_damaging(0.993) TCGA-64-1679-01 15 85345402 85345402 G T ZNF592 Missense_Mutation p.M1194I 0.28 tolerated(0.19) benign(0) TCGA-64-1679-01 15 88680653 88680653 T A NTRK3 Missense_Mutation p.M202L 0.15 tolerated(1) benign(0.011) TCGA-64-1679-01 15 89761919 89761919 G T RLBP1 Silent p.G6G 0.23 TCGA-64-1679-01 16 10997612 10997612 T C CIITA Missense_Mutation p.V266A 0.07 tolerated(1) benign(0.001) TCGA-64-1679-01 16 20359765 20359765 G T UMOD Nonsense_Mutation p.Y286* 0.21 TCGA-64-1679-01 16 2048807 2048807 A T ZNF598 Missense_Mutation p.F753I 0.33 probably_damaging(0.999) TCGA-64-1679-01 16 21698784 21698784 G T OTOA Missense_Mutation p.L150F 0.20 tolerated(0.52) benign(0.164) TCGA-64-1679-01 16 22142978 22142978 C G VWA3A Missense_Mutation p.D600E 0.32 tolerated(0.1) possibly_damaging(0.836) TCGA-64-1679-01 16 2263992 2263992 T A PGP Nonsense_Mutation p.K235* 0.13 TCGA-64-1679-01 16 239895 239895 C G LUC7L Intron 0.17 TCGA-64-1679-01 16 24372671 24372671 A T CACNG3 Splice_Site p.X146_splice 0.17 TCGA-64-1679-01 16 27078574 27078574 C G C16orf82 RNA 0.27 TCGA-64-1679-01 16 2813501 2813501 G T SRRM2 Missense_Mutation p.G991V 0.17 unknown(0) TCGA-64-1679-01 16 28996747 28996747 G T LAT Missense_Mutation p.E39D 0.07 tolerated_low_confidence(0.35) benign(0.388) TCGA-64-1679-01 16 30749056 30749056 G T SRCAP Missense_Mutation p.E2565D 0.19 unknown(0) TCGA-64-1679-01 16 31012463 31012463 C A STX1B Missense_Mutation p.V53L 0.12 tolerated(0.15) possibly_damaging(0.498) TCGA-64-1679-01 16 3170215 3170215 C T ZNF205 Silent p.N518N 0.14 TCGA-64-1679-01 16 5078957 5078957 C A NAGPA Missense_Mutation p.A282S 0.16 probably_damaging(1) TCGA-64-1679-01 16 57760106 57760106 G T CCDC135 Missense_Mutation p.A629S 0.25 tolerated(0.08) benign(0.17) TCGA-64-1679-01 16 597502 597502 G T CAPN15 Missense_Mutation p.A222S 0.16 tolerated(0.61) benign(0.004) TCGA-64-1679-01 16 71319360 71319360 T A CMTR2 Missense_Mutation p.N155I 0.27 deleterious(0) probably_damaging(0.999) TCGA-64-1679-01 16 76513435 76513435 G T CNTNAP4 Nonsense_Mutation p.E555* 0.25 TCGA-64-1679-01 16 76569441 76569441 G T CNTNAP4 Splice_Site p.X846_splice 0.29 TCGA-64-1679-01 16 8999094 8999094 C A USP7 Missense_Mutation p.R508L 0.12 deleterious(0.01) probably_damaging(0.947) TCGA-64-1679-01 17 10222310 10222310 G T MYH13 Missense_Mutation p.R1179S 0.27 deleterious(0) benign(0.369) TCGA-64-1679-01 17 10432977 10432977 C A MYH2 Missense_Mutation p.E1007D 0.23 deleterious(0.01) probably_damaging(0.913) TCGA-64-1679-01 17 10543408 10543408 C T MYH3 Missense_Mutation p.E863K 0.24 tolerated(0.37) benign(0.007) TCGA-64-1679-01 17 29528427 29528427 A G NF1 Splice_Site p.X396_splice 0.41 TCGA-64-1679-01 17 33738771 33738771 G A SLFN12 Silent p.L441L 0.37 TCGA-64-1679-01 17 3448539 3448539 C A TRPV3 Missense_Mutation p.G49V 0.25 deleterious(0) possibly_damaging(0.906) TCGA-64-1679-01 17 34893860 34893860 G A PIGW Missense_Mutation p.E304K 0.09 deleterious(0) probably_damaging(0.998) TCGA-64-1679-01 17 3649152 3649152 C A ITGAE Missense_Mutation p.C742F 0.26 tolerated(0.69) benign(0.257) TCGA-64-1679-01 17 37619304 37619304 A G CDK12 Missense_Mutation p.Y327C 0.30 unknown(0) TCGA-64-1679-01 17 39150184 39150184 G T KRTAP3-3 Missense_Mutation p.H56N 0.34 tolerated_low_confidence(0.32) possibly_damaging(0.901) TCGA-64-1679-01 17 39388893 39388893 G C KRTAP9-3 Missense_Mutation p.C47S 0.39 deleterious(0.02) unknown(0) TCGA-64-1679-01 17 39577234 39577234 G T KRT37 Missense_Mutation p.P416T 0.30 deleterious(0.02) possibly_damaging(0.908) TCGA-64-1679-01 17 39881192 39881192 C T HAP1 Missense_Mutation p.E541K 0.04 deleterious(0) possibly_damaging(0.486) TCGA-64-1679-01 17 39927916 39927916 C G JUP Missense_Mutation p.G64A 0.27 tolerated(0.33) benign(0.001) TCGA-64-1679-01 17 42457145 42457145 A T ITGA2B Missense_Mutation p.V597E 0.15 deleterious(0.03) possibly_damaging(0.868) TCGA-64-1679-01 17 56833345 56833345 G A PPM1E 5'UTR 0.48 TCGA-64-1679-01 17 67197703 67197703 C A ABCA10 Missense_Mutation p.E371D 0.20 tolerated(0.69) benign(0.013) TCGA-64-1679-01 17 7077011 7077011 C G ASGR1 Silent p.L281L 0.12 TCGA-64-1679-01 17 71419589 71419589 C G SDK2 Silent p.T611T 0.43 TCGA-64-1679-01 17 73235895 73235895 C A GGA3 Missense_Mutation p.D520Y 0.27 deleterious(0.01) probably_damaging(0.927) TCGA-64-1679-01 17 74301008 74301008 C A QRICH2 Silent p.R17R 0.29 TCGA-64-1679-01 17 7577547 7577547 C A TP53 Missense_Mutation p.G245V 0.13 deleterious(0) probably_damaging(1) TCGA-64-1679-01 17 80400587 80400587 G A C17orf62 3'UTR 0.38 TCGA-64-1679-01 18 13048964 13048964 C T CEP192 Missense_Mutation p.A725V 0.08 tolerated(0.15) benign(0.199) TCGA-64-1679-01 18 19762969 19762969 A C GATA6 Missense_Mutation p.N529H 0.21 tolerated(0.09) possibly_damaging(0.792) TCGA-64-1679-01 18 32462098 32462098 G T DTNA Missense_Mutation p.R656L 0.19 deleterious_low_confidence(0) benign(0.066) TCGA-64-1679-01 18 42531871 42531871 G A SETBP1 Missense_Mutation p.V856M 0.47 deleterious(0) probably_damaging(0.998) TCGA-64-1679-01 18 54361959 54361959 C T WDR7 Missense_Mutation p.S359L 0.22 deleterious(0.02) benign(0.021) TCGA-64-1679-01 18 7044769 7044769 G C LAMA1 Missense_Mutation p.Q310E 0.12 deleterious(0.03) probably_damaging(0.996) TCGA-64-1679-01 18 70502449 70502449 G T NETO1 Intron 0.16 TCGA-64-1679-01 18 70502494 70502494 G A NETO1 Intron 0.10 TCGA-64-1679-01 19 10945981 10945981 G A TMED1 Nonsense_Mutation p.Q78* 0.11 TCGA-64-1679-01 19 12740052 12740052 A G ZNF791 Missense_Mutation p.H570R 0.32 deleterious(0) probably_damaging(0.971) TCGA-64-1679-01 19 14507186 14507186 T C CD97 Missense_Mutation p.C127R 0.05 deleterious(0) probably_damaging(0.987) TCGA-64-1679-01 19 14876179 14876179 C A EMR2 Missense_Mutation p.D287Y 0.10 deleterious(0.03) benign(0.052) TCGA-64-1679-01 19 14877889 14877889 A G EMR2 Missense_Mutation p.C130R 0.35 deleterious(0) possibly_damaging(0.839) TCGA-64-1679-01 19 14952304 14952304 G T OR7A10 Missense_Mutation p.P129H 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-64-1679-01 19 15989681 15989681 C T CYP4F2 Missense_Mutation p.R488H 0.11 tolerated(0.06) benign(0.178) TCGA-64-1679-01 19 16131434 16131434 G T LINC00661 RNA 0.15 TCGA-64-1679-01 19 17892047 17892047 G T FCHO1 Missense_Mutation p.M545I 0.08 tolerated(0.23) benign(0.007) TCGA-64-1679-01 19 19136604 19136604 C G SUGP2 Missense_Mutation p.E185Q 0.09 tolerated(0.09) possibly_damaging(0.563) TCGA-64-1679-01 19 21216307 21216307 G T ZNF430 Nonsense_Mutation p.E48* 0.26 TCGA-64-1679-01 19 22154080 22154080 G T ZNF208 Silent p.P1252P 0.20 TCGA-64-1679-01 19 22154114 22154114 G A ZNF208 Missense_Mutation p.T1241I 0.14 tolerated(0.74) benign(0.098) TCGA-64-1679-01 19 22574517 22574517 G T ZNF98 Missense_Mutation p.T507K 0.27 tolerated(1) benign(0.001) TCGA-64-1679-01 19 23159271 23159271 C A ZNF728 Missense_Mutation p.G290C 0.15 deleterious(0.02) benign(0.244) TCGA-64-1679-01 19 31038967 31038967 G T ZNF536 Missense_Mutation p.G814V 0.24 deleterious(0) possibly_damaging(0.619) TCGA-64-1679-01 19 35786395 35786395 G T MAG Intron 0.28 TCGA-64-1679-01 19 36003562 36003562 A C DMKN Missense_Mutation p.M186R 0.10 deleterious(0) benign(0.009) TCGA-64-1679-01 19 37211274 37211274 G T ZNF567 Missense_Mutation p.V519L 0.17 tolerated(0.44) probably_damaging(0.96) TCGA-64-1679-01 19 39087686 39087686 G C MAP4K1 Missense_Mutation p.F643L 0.04 deleterious(0) probably_damaging(0.991) TCGA-64-1679-01 19 40872767 40872767 G A PLD3 Missense_Mutation p.D64N 0.11 tolerated(0.39) benign(0.262) TCGA-64-1679-01 19 41123095 41123096 - T LTBP4 Missense_Mutation p.Y1079Lfs*17 0.36 TCGA-64-1679-01 19 43358382 43358382 T A PSG10P RNA 0.35 TCGA-64-1679-01 19 45923668 45923668 C T ERCC1 Silent p.L113L 0.40 TCGA-64-1679-01 19 46627241 46627241 G T IGFL3 Silent p.P84P 0.38 TCGA-64-1679-01 19 50099610 50099610 G A PRR12 Missense_Mutation p.G673E 0.18 probably_damaging(0.969) TCGA-64-1679-01 19 50666245 50666245 C A IZUMO2 Silent p.A69A 0.39 TCGA-64-1679-01 19 51274755 51274755 G T GPR32 Missense_Mutation p.A300S 0.39 tolerated(0.24) benign(0.315) TCGA-64-1679-01 19 52793794 52793794 G A ZNF766 Silent p.K250K 0.40 TCGA-64-1679-01 19 54695979 54695979 C T TSEN34 Missense_Mutation p.S167F 0.06 tolerated(0.13) benign(0.026) TCGA-64-1679-01 19 54724968 54724968 G C LILRB3 Missense_Mutation p.N314K 0.52 deleterious(0) benign(0.138) TCGA-64-1679-01 19 55450278 55450278 C A NLRP7 Nonsense_Mutation p.E637* 0.34 TCGA-64-1679-01 19 56313001 56313001 A T NLRP11 Missense_Mutation p.L703Q 0.33 tolerated(0.32) benign(0.259) TCGA-64-1679-01 19 56565158 56565158 G C NLRP5 Missense_Mutation p.V1095L 0.28 tolerated(0.46) benign(0.001) TCGA-64-1679-01 19 7742605 7742605 G T C19orf59 Silent p.T59T 0.15 TCGA-64-1679-01 19 9408097 9408097 T C ZNF699 Silent p.E115E 0.25 TCGA-64-1679-01 1 100671808 100671808 A T DBT Missense_Mutation p.I420N 0.21 deleterious(0) probably_damaging(0.999) TCGA-64-1679-01 1 10228257 10228257 G T UBE4B Missense_Mutation p.A1088S 0.14 deleterious(0.02) possibly_damaging(0.627) TCGA-64-1679-01 1 103491416 103491416 T A COL11A1 Intron 0.15 TCGA-64-1679-01 1 107866972 107866972 G T NTNG1 Silent p.L105L 0.20 TCGA-64-1679-01 1 110714731 110714731 C A SLC6A17 Silent p.P112P 0.08 TCGA-64-1679-01 1 112997080 112997080 G T CTTNBP2NL Missense_Mutation p.D114Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-64-1679-01 1 115110688 115110688 C T BCAS2 3'UTR 0.06 TCGA-64-1679-01 1 116269693 116269693 T C CASQ2 Silent p.P219P 0.11 TCGA-64-1679-01 1 120168693 120168693 C A ZNF697 Missense_Mutation p.A11S 0.18 deleterious_low_confidence(0.03) benign(0.006) TCGA-64-1679-01 1 12024297 12024297 G T PLOD1 Missense_Mutation p.S423I 0.19 deleterious(0) possibly_damaging(0.786) TCGA-64-1679-01 1 120279767 120279768 - A PHGDH Frame_Shift_Ins p.H275Qfs*2 0.24 TCGA-64-1679-01 1 144882495 144882495 C A PDE4DIP Missense_Mutation p.R1175I 0.10 tolerated(0.22) probably_damaging(0.991) TCGA-64-1679-01 1 152277708 152277708 G C FLG Missense_Mutation p.D3218E 0.18 unknown(0) TCGA-64-1679-01 1 152279299 152279299 C A FLG Missense_Mutation p.S2688I 0.08 possibly_damaging(0.813) TCGA-64-1679-01 1 152325965 152325965 G T FLG2 Missense_Mutation p.H1433N 0.17 benign(0.115) TCGA-64-1679-01 1 152552337 152552337 G T LCE3D Missense_Mutation p.P26T 0.19 tolerated_low_confidence(0.09) unknown(0) TCGA-64-1679-01 1 157497526 157497526 G T FCRL5 Missense_Mutation p.S614Y 0.22 tolerated(0.08) probably_damaging(0.99) TCGA-64-1679-01 1 157665243 157665243 G T FCRL3 Silent p.A429A 0.16 TCGA-64-1679-01 1 157809178 157809178 G T CD5L Missense_Mutation p.F17L 0.14 tolerated(1) benign(0.003) TCGA-64-1679-01 1 158390349 158390349 G T OR10K2 Missense_Mutation p.S103Y 0.20 deleterious(0) benign(0.14) TCGA-64-1679-01 1 158746645 158746645 G T OR6N2 Silent p.R261R 0.21 TCGA-64-1679-01 1 160162662 160162662 T A CASQ1 Missense_Mutation p.V117E 0.20 deleterious(0) probably_damaging(0.994) TCGA-64-1679-01 1 160518020 160518020 C A CD84 3'Flank 0.18 TCGA-64-1679-01 1 169524505 169524505 G A F5 Missense_Mutation p.R345W 0.10 deleterious(0) probably_damaging(1) TCGA-64-1679-01 1 171510839 171510839 G T PRRC2C Nonsense_Mutation p.E1410* 0.20 TCGA-64-1679-01 1 17575706 17575706 C A PADI3 Missense_Mutation p.T25N 0.20 tolerated(0.32) possibly_damaging(0.745) TCGA-64-1679-01 1 179079530 179079530 C A ABL2 Missense_Mutation p.R571L 0.24 deleterious(0) benign(0.341) TCGA-64-1679-01 1 180257516 180257516 G A ACBD6 Silent p.H277H 0.15 TCGA-64-1679-01 1 181058374 181058374 G T IER5 Silent p.R112R 0.39 TCGA-64-1679-01 1 182615976 182615976 G T RGS8 Missense_Mutation p.A164D 0.18 deleterious(0) probably_damaging(0.997) TCGA-64-1679-01 1 183933123 183933123 G T COLGALT2 Missense_Mutation p.H288Q 0.18 tolerated(0.3) benign(0.011) TCGA-64-1679-01 1 18661395 18661395 G T IGSF21 Missense_Mutation p.E105D 0.19 deleterious(0.02) possibly_damaging(0.682) TCGA-64-1679-01 1 19525396 19525396 G A UBR4 Silent p.G135G 0.24 TCGA-64-1679-01 1 196801077 196801077 G T CFHR1 Missense_Mutation p.R314L 0.22 deleterious(0) probably_damaging(0.996) TCGA-64-1679-01 1 197032028 197032028 G A F13B Missense_Mutation p.T75M 0.07 deleterious(0.04) possibly_damaging(0.537) TCGA-64-1679-01 1 203025516 203025516 G T PPFIA4 Missense_Mutation p.R201L 0.19 deleterious(0.05) benign(0.018) TCGA-64-1679-01 1 204230557 204230557 C A PLEKHA6 Missense_Mutation p.R134L 0.31 deleterious(0) probably_damaging(0.999) TCGA-64-1679-01 1 207647210 207647210 T C CR2 Silent p.V740V 0.22 TCGA-64-1679-01 1 210004186 210004186 A G DIEXF Silent p.S62S 0.22 TCGA-64-1679-01 1 214818608 214818608 G C CENPF Missense_Mutation p.D1899H 0.20 possibly_damaging(0.487) TCGA-64-1679-01 1 215972262 215972262 G T USH2A Nonsense_Mutation p.Y3315* 0.17 TCGA-64-1679-01 1 216465670 216465670 G T USH2A Missense_Mutation p.Q563K 0.21 benign(0.1) TCGA-64-1679-01 1 226822403 226822403 G A ITPKB Missense_Mutation p.T937I 0.12 deleterious(0) possibly_damaging(0.86) TCGA-64-1679-01 1 230492930 230492930 C A PGBD5 Nonsense_Mutation p.G88* 0.19 TCGA-64-1679-01 1 236647424 236647424 C A EDARADD 3'Flank 0.16 TCGA-64-1679-01 1 237494175 237494175 C G RYR2 Intron 0.17 TCGA-64-1679-01 1 237923132 237923132 C T RYR2 Silent p.A3794A 0.21 TCGA-64-1679-01 1 237993848 237993848 G - RYR2 Frame_Shift_Del p.I4893* 0.21 TCGA-64-1679-01 1 240256625 240256625 C G FMN2 Missense_Mutation p.R406G 0.18 unknown(0) TCGA-64-1679-01 1 241752098 241752098 C A KMO Missense_Mutation p.A355E 0.23 deleterious(0) probably_damaging(0.998) TCGA-64-1679-01 1 241886722 241886722 G T WDR64 Missense_Mutation p.S383I 0.24 deleterious(0) probably_damaging(0.999) TCGA-64-1679-01 1 246823556 246823556 G C CNST Missense_Mutation p.G631A 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-64-1679-01 1 247587867 247587867 C A NLRP3 Silent p.S374S 0.25 TCGA-64-1679-01 1 28559490 28559490 C A DNAJC8 Missense_Mutation p.S7I 0.13 tolerated(0.14) unknown(0) TCGA-64-1679-01 1 36752298 36752298 G C THRAP3 Missense_Mutation p.R156P 0.20 deleterious(0.04) unknown(0) TCGA-64-1679-01 1 45294011 45294011 G A PTCH2 Missense_Mutation p.R556W 0.27 deleterious(0) probably_damaging(0.997) TCGA-64-1679-01 1 46977793 46977793 C A DMBX1 Missense_Mutation p.S254Y 0.20 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-64-1679-01 1 47183662 47183662 C A EFCAB14 Missense_Mutation p.R33L 0.15 deleterious(0) probably_damaging(0.987) TCGA-64-1679-01 1 47685528 47685528 G T TAL1 Missense_Mutation p.P287H 0.13 deleterious(0) probably_damaging(0.987) TCGA-64-1679-01 1 50610738 50610738 C A ELAVL4 Missense_Mutation p.T57N 0.18 tolerated(0.52) benign(0.015) TCGA-64-1679-01 1 52981709 52981709 C A ZCCHC11 Nonsense_Mutation p.E246* 0.18 TCGA-64-1679-01 1 53544622 53544622 G C PODN Silent p.L528L 0.38 TCGA-64-1679-01 1 54252918 54252918 T A NDC1 Missense_Mutation p.L571F 0.16 deleterious(0) probably_damaging(1) TCGA-64-1679-01 1 54337113 54337113 C A YIPF1 Missense_Mutation p.G138V 0.23 deleterious(0) probably_damaging(0.996) TCGA-64-1679-01 1 55077354 55077354 G T FAM151A Silent p.R289R 0.17 TCGA-64-1679-01 1 55158101 55158101 G C MROH7 Missense_Mutation p.V906L 0.22 tolerated(0.08) benign(0.145) TCGA-64-1679-01 1 62626579 62626579 G T INADL Splice_Site p.X1793_splice 0.08 TCGA-64-1679-01 1 6520177 6520178 - T ESPN Frame_Shift_Ins p.K847Efs*7 0.25 TCGA-64-1679-01 1 67861895 67861895 G A IL12RB2 3'UTR 0.10 TCGA-64-1679-01 1 67889914 67889914 C T SERBP1 Missense_Mutation p.E263K 0.17 deleterious(0.02) possibly_damaging(0.734) TCGA-64-1679-01 1 71418718 71418718 G T PTGER3 Missense_Mutation p.Q377K 0.22 tolerated(0.68) benign(0) TCGA-64-1679-01 1 74671407 74671407 A G FPGT Missense_Mutation p.Y559C 0.19 deleterious(0.03) possibly_damaging(0.662) TCGA-64-1679-01 1 74834759 74834759 C A FPGT-TNNI3K Missense_Mutation p.Q573K 0.29 tolerated(0.11) probably_damaging(0.986) TCGA-64-1679-01 1 75038906 75038906 C A C1orf173 Nonsense_Mutation p.E830* 0.22 TCGA-64-1679-01 1 78324681 78324681 C T FAM73A Missense_Mutation p.P352L 0.16 deleterious(0.03) benign(0.286) TCGA-64-1679-01 1 7887411 7887411 C T PER3 Missense_Mutation p.P800S 0.20 tolerated(0.17) possibly_damaging(0.857) TCGA-64-1679-01 1 79120844 79120844 G T IFI44 Missense_Mutation p.V214L 0.19 tolerated(0.24) possibly_damaging(0.64) TCGA-64-1679-01 1 84815393 84815393 T C SAMD13 Missense_Mutation p.L96P 0.20 deleterious(0) probably_damaging(0.998) TCGA-64-1679-01 1 87805252 87805252 C A LMO4 Nonsense_Mutation p.C90* 0.37 TCGA-64-1679-01 1 89448560 89448560 C G RBMXL1 Missense_Mutation p.R317P 0.19 tolerated(0.3) benign(0.007) TCGA-64-1679-01 1 89657124 89657124 G T GBP4 Silent p.R246R 0.19 TCGA-64-1679-01 1 94473843 94473843 C A ABCA4 Missense_Mutation p.G1949V 0.22 tolerated(0.11) possibly_damaging(0.764) TCGA-64-1679-01 20 17462436 17462436 G T PCSK2 Missense_Mutation p.K546N 0.10 tolerated(0.25) possibly_damaging(0.88) TCGA-64-1679-01 20 25239872 25239872 G T PYGB Splice_Site p.X82_splice 0.17 TCGA-64-1679-01 20 31695558 31695558 G T BPIFB4 Missense_Mutation p.G585C 0.18 deleterious(0.02) probably_damaging(0.984) TCGA-64-1679-01 20 34519200 34519200 G T PHF20 Missense_Mutation p.D712Y 0.19 deleterious(0) probably_damaging(0.95) TCGA-64-1679-01 20 36932652 36932652 G - BPI Frame_Shift_Del p.R14Dfs*5 0.10 TCGA-64-1679-01 20 36952318 36952318 C A BPI Missense_Mutation p.P272Q 0.20 deleterious(0) probably_damaging(0.989) TCGA-64-1679-01 20 37570728 37570728 G T FAM83D Missense_Mutation p.D234Y 0.10 deleterious(0) possibly_damaging(0.891) TCGA-64-1679-01 20 37576645 37576645 T A FAM83D Splice_Site p.X289_splice 0.20 TCGA-64-1679-01 20 41419856 41419856 A T PTPRT Silent p.T155T 0.04 TCGA-64-1679-01 20 44578436 44578436 C T ZNF335 Intron 0.11 TCGA-64-1679-01 20 45130201 45130201 T C ZNF334 Missense_Mutation p.T593A 0.20 tolerated(0.13) benign(0.418) TCGA-64-1679-01 20 5566906 5566906 C A GPCPD1 Missense_Mutation p.G81C 0.17 tolerated(0.09) probably_damaging(0.965) TCGA-64-1679-01 20 55777651 55777651 G - BMP7 Frame_Shift_Del p.R214Vfs*51 0.19 TCGA-64-1679-01 20 57561906 57561906 C G NELFCD Missense_Mutation p.L110V 0.27 deleterious(0) probably_damaging(0.999) TCGA-64-1679-01 20 60891003 60891003 C A LAMA5 Splice_Site p.X2623_splice 0.43 TCGA-64-1679-01 20 61303108 61303108 G T SLCO4A1 Missense_Mutation p.G678C 0.18 deleterious(0) probably_damaging(0.998) TCGA-64-1679-01 20 61873917 61873917 G T NKAIN4 Silent p.S197S 0.16 TCGA-64-1679-01 20 61981752 61981752 C A CHRNA4 Silent p.T337T 0.19 TCGA-64-1679-01 21 15746076 15746076 G A HSPA13 Silent p.P426P 0.19 TCGA-64-1679-01 21 22710708 22710708 G A NCAM2 Splice_Site p.X300_splice 0.20 TCGA-64-1679-01 21 32513751 32513751 C T TIAM1 Missense_Mutation p.E1183K 0.26 deleterious(0) probably_damaging(0.957) TCGA-64-1679-01 21 33043759 33043759 C A SCAF4 Missense_Mutation p.V1133F 0.23 unknown(0) TCGA-64-1679-01 21 46687332 46687332 C A POFUT2 Intron 0.34 TCGA-64-1679-01 22 16256618 16256618 T C POTEH 3'UTR 0.05 TCGA-64-1679-01 22 16267078 16267078 C T POTEH Silent p.K457K 0.02 TCGA-64-1679-01 22 22658345 22658345 G T BMS1P20 RNA 0.08 TCGA-64-1679-01 22 22707535 22707535 C A IGLV5-48 Nonsense_Mutation p.C41* 0.28 TCGA-64-1679-01 22 22707610 22707610 G T IGLV5-48 Silent p.R66R 0.35 TCGA-64-1679-01 22 22890900 22890900 C T PRAME Silent p.L373L 0.38 TCGA-64-1679-01 22 26299729 26299729 G T MYO18B Missense_Mutation p.L1693F 0.28 deleterious(0) probably_damaging(0.954) TCGA-64-1679-01 22 26830260 26830260 G A ASPHD2 Missense_Mutation p.E227K 0.08 tolerated(0.15) benign(0.223) TCGA-64-1679-01 22 30660136 30660136 G T OSM Silent p.P165P 0.11 TCGA-64-1679-01 22 31091455 31091455 G T OSBP2 Missense_Mutation p.G187C 0.16 deleterious(0) probably_damaging(1) TCGA-64-1679-01 22 50925850 50925850 G T MIOX Missense_Mutation p.D18Y 0.13 deleterious(0.02) benign(0.035) TCGA-64-1679-01 2 101097619 101097619 T G NMS Missense_Mutation p.F135C 0.23 deleterious(0.02) benign(0.159) TCGA-64-1679-01 2 103095489 103095489 C G SLC9A4 Missense_Mutation p.P150A 0.14 tolerated(0.09) benign(0.133) TCGA-64-1679-01 2 108910141 108910141 C A SULT1C2 Missense_Mutation p.D6E 0.20 tolerated(0.75) benign(0.002) TCGA-64-1679-01 2 11053045 11053045 C A KCNF1 Missense_Mutation p.Q165K 0.18 tolerated(0.09) possibly_damaging(0.625) TCGA-64-1679-01 2 11053046 11053046 A G KCNF1 Missense_Mutation p.Q165R 0.15 tolerated(0.71) benign(0.18) TCGA-64-1679-01 2 113737597 113737597 G T IL36G Missense_Mutation p.V58F 0.05 tolerated(0.19) benign(0.038) TCGA-64-1679-01 2 119735461 119735461 C G MARCO Missense_Mutation p.P239R 0.20 deleterious(0) probably_damaging(0.997) TCGA-64-1679-01 2 125175026 125175026 G A CNTNAP5 Missense_Mutation p.A130T 0.21 tolerated(0.14) benign(0.013) TCGA-64-1679-01 2 131487397 131487397 C G GPR148 Missense_Mutation p.L225V 0.11 tolerated(0.1) benign(0.038) TCGA-64-1679-01 2 131520863 131520863 C A AMER3 Silent p.G406G 0.11 TCGA-64-1679-01 2 131521085 131521085 C A AMER3 Missense_Mutation p.S480R 0.09 deleterious(0) probably_damaging(0.949) TCGA-64-1679-01 2 133489455 133489455 G T NCKAP5 Silent p.A1766A 0.09 TCGA-64-1679-01 2 135745227 135745227 G T MAP3K19 Missense_Mutation p.S405R 0.17 tolerated(0.51) benign(0.006) TCGA-64-1679-01 2 136393668 136393668 G T R3HDM1 Missense_Mutation p.R273L 0.26 tolerated(0.33) possibly_damaging(0.602) TCGA-64-1679-01 2 136569890 136569890 C A LCT Missense_Mutation p.V782L 0.07 tolerated(0.16) possibly_damaging(0.657) TCGA-64-1679-01 2 141055532 141055532 G C LRP1B Missense_Mutation p.P4271R 0.07 probably_damaging(0.942) TCGA-64-1679-01 2 143718199 143718199 G C KYNU Missense_Mutation p.E197Q 0.19 tolerated(0.12) benign(0.04) TCGA-64-1679-01 2 160295207 160295207 C A BAZ2B Splice_Site p.X301_splice 0.19 TCGA-64-1679-01 2 162719434 162719434 C T SLC4A10 Missense_Mutation p.R210C 0.15 deleterious(0) probably_damaging(0.999) TCGA-64-1679-01 2 167760202 167760202 G T XIRP2 Missense_Mutation p.M70I 0.13 benign(0) TCGA-64-1679-01 2 168102003 168102003 T A XIRP2 Silent p.T1367T 0.27 TCGA-64-1679-01 2 168103030 168103031 GG A XIRP2 Frame_Shift_Del p.G1710Mfs*41 0.16 TCGA-64-1679-01 2 168114604 168114604 T A XIRP2 3'UTR 0.16 TCGA-64-1679-01 2 169995821 169995821 G A LRP2 Missense_Mutation p.A4443V 0.13 benign(0.001) TCGA-64-1679-01 2 170094605 170094605 C G LRP2 Missense_Mutation p.R1501T 0.07 benign(0.006) TCGA-64-1679-01 2 170863539 170863539 G T UBR3 Nonsense_Mutation p.E1357* 0.31 TCGA-64-1679-01 2 173352049 173352049 A T ITGA6 Silent p.I676I 0.22 TCGA-64-1679-01 2 175263030 175263030 G T SCRN3 Missense_Mutation p.D7Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-64-1679-01 2 179582757 179582757 C A TTN Missense_Mutation p.V8326L 0.15 TCGA-64-1679-01 2 183867758 183867758 C G NCKAP1 Missense_Mutation p.D111H 0.11 deleterious(0) probably_damaging(0.967) TCGA-64-1679-01 2 187692860 187692860 T C ZSWIM2 Missense_Mutation p.T585A 0.09 tolerated(0.1) benign(0.077) TCGA-64-1679-01 2 1890380 1890380 C A MYT1L Splice_Site p.X879_splice 0.13 TCGA-64-1679-01 2 215278841 215278841 A G VWC2L 5'UTR 0.09 TCGA-64-1679-01 2 215815684 215815684 A G ABCA12 Silent p.Y2257Y 0.27 TCGA-64-1679-01 2 220315884 220315884 G C SPEG Missense_Mutation p.A714P 0.09 probably_damaging(0.998) TCGA-64-1679-01 2 220332025 220332025 G T SPEG Missense_Mutation p.R1004L 0.18 probably_damaging(0.992) TCGA-64-1679-01 2 223917945 223917945 G C KCNE4 Missense_Mutation p.D133H 0.13 deleterious(0) probably_damaging(0.998) TCGA-64-1679-01 2 225422432 225422432 C G CUL3 Missense_Mutation p.G70R 0.09 deleterious(0) probably_damaging(0.997) TCGA-64-1679-01 2 231042313 231042313 C A SP110 Missense_Mutation p.A511S 0.14 tolerated(1) possibly_damaging(0.709) TCGA-64-1679-01 2 234628155 234628155 C T UGT1A4 Missense_Mutation p.P230L 0.19 tolerated(0.11) benign(0.113) TCGA-64-1679-01 2 26676259 26676259 G T DRC1 Missense_Mutation p.E587D 0.21 tolerated(0.38) benign(0.019) TCGA-64-1679-01 2 26690031 26690031 C A OTOF Missense_Mutation p.R1433L 0.19 deleterious(0) probably_damaging(0.999) TCGA-64-1679-01 2 26739403 26739403 C A OTOF Missense_Mutation p.G131V 0.18 tolerated(0.13) possibly_damaging(0.46) TCGA-64-1679-01 2 31587021 31587021 C A XDH Intron 0.14 TCGA-64-1679-01 2 33540297 33540297 C A LTBP1 Missense_Mutation p.Q1231K 0.17 tolerated(0.17) benign(0.403) TCGA-64-1679-01 2 38975201 38975201 G A SRSF7 Missense_Mutation p.S187L 0.16 tolerated_low_confidence(0.27) benign(0.194) TCGA-64-1679-01 2 44079588 44079588 G T ABCG8 Missense_Mutation p.R219S 0.09 deleterious(0) probably_damaging(0.982) TCGA-64-1679-01 2 44102542 44102542 C G ABCG8 Missense_Mutation p.S582R 0.15 deleterious(0) benign(0.232) TCGA-64-1679-01 2 54133777 54133777 C T PSME4 Missense_Mutation p.M967I 0.18 tolerated(1) benign(0) TCGA-64-1679-01 2 54872392 54872392 G T SPTBN1 Silent p.R1432R 0.16 TCGA-64-1679-01 2 69646724 69646724 C A NFU1 Missense_Mutation p.R105S 0.36 tolerated(0.25) benign(0.363) TCGA-64-1679-01 2 84518123 84518123 T A FUNDC2P2 RNA 0.14 TCGA-64-1679-01 2 89417046 89417046 C A IGKV1-17 Silent p.R46R 0.19 TCGA-64-1679-01 3 101540739 101540739 G T NXPE3 Missense_Mutation p.V541F 0.19 deleterious(0.05) possibly_damaging(0.526) TCGA-64-1679-01 3 119236073 119236073 G A TIMMDC1 Silent p.L206L 0.06 TCGA-64-1679-01 3 121289635 121289635 G C ARGFX Silent p.V25V 0.06 TCGA-64-1679-01 3 121341065 121341065 T C FBXO40 Silent p.A263A 0.20 TCGA-64-1679-01 3 121413027 121413027 C T GOLGB1 Missense_Mutation p.E2115K 0.06 probably_damaging(0.92) TCGA-64-1679-01 3 123049747 123049747 G T ADCY5 Silent p.I545I 0.25 TCGA-64-1679-01 3 128852984 128852984 C T ISY1 Missense_Mutation p.R221K 0.09 tolerated(0.89) benign(0.149) TCGA-64-1679-01 3 13368843 13368843 C A NUP210 Missense_Mutation p.A1461S 0.16 tolerated(0.82) benign(0.002) TCGA-64-1679-01 3 134968224 134968224 T A EPHB1 Missense_Mutation p.F913I 0.21 deleterious(0.03) possibly_damaging(0.481) TCGA-64-1679-01 3 135870369 135870369 C A MSL2 Missense_Mutation p.V452L 0.13 tolerated(0.4) benign(0.002) TCGA-64-1679-01 3 136141303 136141303 A C STAG1 Missense_Mutation p.I662M 0.22 tolerated(0.06) possibly_damaging(0.729) TCGA-64-1679-01 3 143082363 143082363 C A SLC9A9 Missense_Mutation p.A523S 0.19 tolerated(0.07) possibly_damaging(0.5) TCGA-64-1679-01 3 143292936 143292936 G T SLC9A9 Missense_Mutation p.L332I 0.25 deleterious(0.03) probably_damaging(0.945) TCGA-64-1679-01 3 158537491 158537491 G T MFSD1 Missense_Mutation p.D285Y 0.17 deleterious(0.02) probably_damaging(0.96) TCGA-64-1679-01 3 161216973 161216973 G T OTOL1 Missense_Mutation p.A127S 0.17 tolerated(0.51) unknown(0) TCGA-64-1679-01 3 164766935 164766935 G C SI Missense_Mutation p.S565R 0.27 deleterious(0) probably_damaging(0.973) TCGA-64-1679-01 3 164905951 164905951 G T SLITRK3 Missense_Mutation p.P890T 0.17 deleterious(0.02) benign(0.06) TCGA-64-1679-01 3 171426597 171426597 C A PLD1 Missense_Mutation p.V365L 0.20 tolerated(0.12) benign(0.034) TCGA-64-1679-01 3 186917596 186917596 T A RTP1 Missense_Mutation p.V177E 0.26 tolerated(0.07) possibly_damaging(0.857) TCGA-64-1679-01 3 186980341 186980341 G T MASP1 Nonsense_Mutation p.Y135* 0.20 TCGA-64-1679-01 3 189612219 189612219 G T TP63 Missense_Mutation p.E657D 0.22 tolerated(0.5) benign(0.001) TCGA-64-1679-01 3 21706379 21706379 G T ZNF385D Missense_Mutation p.A55E 0.12 deleterious(0) benign(0.232) TCGA-64-1679-01 3 24001260 24001260 G C NR1D2 Missense_Mutation p.Q157H 0.15 deleterious(0) probably_damaging(0.999) TCGA-64-1679-01 3 27473031 27473031 G A SLC4A7 Missense_Mutation p.P294L 0.17 tolerated(0.05) benign(0.36) TCGA-64-1679-01 3 35723305 35723305 C T ARPP21 Missense_Mutation p.T21M 0.19 deleterious(0.03) benign(0.005) TCGA-64-1679-01 3 36898278 36898278 T C TRANK1 Missense_Mutation p.K935E 0.14 tolerated(0.25) benign(0.019) TCGA-64-1679-01 3 39373851 39373851 C A CCR8 Missense_Mutation p.T10K 0.17 deleterious(0.02) benign(0.398) TCGA-64-1679-01 3 42679196 42679196 G A NKTR Missense_Mutation p.R667K 0.10 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-64-1679-01 3 50036934 50036934 G A RBM6 Missense_Mutation p.M515I 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-64-1679-01 3 50112758 50112758 G T RBM6 Nonsense_Mutation p.E1081* 0.09 TCGA-64-1679-01 3 51264742 51264742 C T DOCK3 Missense_Mutation p.P469L 0.13 deleterious(0.05) benign(0.133) TCGA-64-1679-01 3 51690031 51690031 G T RAD54L2 Missense_Mutation p.R1024L 0.16 deleterious(0) probably_damaging(0.937) TCGA-64-1679-01 3 58385031 58385031 G T PXK Missense_Mutation p.V370L 0.16 tolerated(0.26) benign(0.105) TCGA-64-1679-01 3 62636563 62636563 G T CADPS Missense_Mutation p.Q388K 0.14 tolerated(0.79) benign(0.042) TCGA-64-1679-01 3 67054223 67054223 C T KBTBD8 Nonsense_Mutation p.Q278* 0.18 TCGA-64-1679-01 3 75476773 75476773 C T FAM86DP RNA 0.20 TCGA-64-1679-01 3 98237790 98237790 C A CLDND1 Missense_Mutation p.Q137H 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-64-1679-01 4 109805343 109805343 C A COL25A1 Silent p.P337P 0.35 TCGA-64-1679-01 4 110980902 110980902 C T ELOVL6 Missense_Mutation p.G77D 0.21 deleterious(0) probably_damaging(0.964) TCGA-64-1679-01 4 1206751 1206751 G A CTBP1 Silent p.A363A 0.17 TCGA-64-1679-01 4 140291483 140291483 G C NAA15 Missense_Mutation p.Q624H 0.16 tolerated(0.06) possibly_damaging(0.873) TCGA-64-1679-01 4 140291517 140291517 G A NAA15 Missense_Mutation p.G636R 0.13 tolerated(0.13) probably_damaging(0.936) TCGA-64-1679-01 4 140291518 140291518 G T NAA15 Missense_Mutation p.G636V 0.13 tolerated(0.07) possibly_damaging(0.642) TCGA-64-1679-01 4 15707203 15707203 T A BST1 Missense_Mutation p.V85E 0.16 deleterious(0) probably_damaging(0.951) TCGA-64-1679-01 4 16587550 16587550 G T LDB2 Missense_Mutation p.L204I 0.15 deleterious(0) probably_damaging(0.994) TCGA-64-1679-01 4 1834499 1834499 C T LETM1 Missense_Mutation p.R351Q 0.18 tolerated(0.11) benign(0.148) TCGA-64-1679-01 4 187541782 187541782 C T FAT1 Silent p.A1986A 0.28 TCGA-64-1679-01 4 20525799 20525799 A T SLIT2 Silent p.S479S 0.21 TCGA-64-1679-01 4 2306941 2306941 C A ZFYVE28 Nonsense_Mutation p.E376* 0.09 TCGA-64-1679-01 4 30726008 30726008 C A PCDH7 Silent p.G988G 0.10 TCGA-64-1679-01 4 38798817 38798817 C A TLR1 Missense_Mutation p.V546L 0.16 tolerated(0.44) benign(0.069) TCGA-64-1679-01 4 46053569 46053569 G T GABRG1 Missense_Mutation p.L335I 0.28 tolerated(0.05) probably_damaging(0.994) TCGA-64-1679-01 4 5018685 5018685 A T CYTL1 Missense_Mutation p.C69S 0.16 deleterious(0) probably_damaging(0.999) TCGA-64-1679-01 4 53468093 53468093 T C USP46 Missense_Mutation p.N284D 0.28 deleterious(0.01) possibly_damaging(0.562) TCGA-64-1679-01 4 55155261 55155261 C A PDGFRA Missense_Mutation p.L954M 0.19 deleterious(0) possibly_damaging(0.89) TCGA-64-1679-01 4 62598770 62598770 T G LPHN3 Missense_Mutation p.F231L 0.33 deleterious(0) probably_damaging(0.997) TCGA-64-1679-01 4 66213899 66213899 C A EPHA5 Missense_Mutation p.W844L 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-64-1679-01 4 66467571 66467571 C G EPHA5 Missense_Mutation p.C233S 0.34 deleterious(0) probably_damaging(0.985) TCGA-64-1679-01 4 69433871 69433871 G C UGT2B17 Nonsense_Mutation p.S111* 0.42 TCGA-64-1679-01 4 79832722 79832722 T A BMP2K Silent p.T1007T 0.34 TCGA-64-1679-01 4 9784157 9784157 C A DRD5 Silent p.S168S 0.09 TCGA-64-1679-01 4 9784743 9784743 G T DRD5 Missense_Mutation p.D364Y 0.24 deleterious(0) probably_damaging(0.996) TCGA-64-1679-01 5 113831760 113831760 G T KCNN2 Nonsense_Mutation p.E541* 0.32 TCGA-64-1679-01 5 13823411 13823411 C A DNAH5 Missense_Mutation p.K2216N 0.50 benign(0.403) TCGA-64-1679-01 5 140530589 140530589 C T PCDHB6 Missense_Mutation p.P251S 0.13 tolerated(0.06) benign(0.064) TCGA-64-1679-01 5 140572143 140572143 G T PCDHB10 Missense_Mutation p.L6F 0.23 tolerated_low_confidence(0.46) benign(0.001) TCGA-64-1679-01 5 140580956 140580956 G A PCDHB11 Missense_Mutation p.G537S 0.24 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-64-1679-01 5 140603183 140603183 G T PCDHB14 Missense_Mutation p.A36S 0.29 tolerated_low_confidence(0.26) possibly_damaging(0.491) TCGA-64-1679-01 5 140712430 140712430 G T PCDHGA1 Missense_Mutation p.A727S 0.22 tolerated_low_confidence(0.14) benign(0.041) TCGA-64-1679-01 5 140769608 140769608 C T PCDHGB4 Silent p.P719P 0.22 TCGA-64-1679-01 5 140774427 140774427 G T PCDHGA8 Missense_Mutation p.D683Y 0.29 deleterious_low_confidence(0.03) benign(0.113) TCGA-64-1679-01 5 147027984 147027984 T A JAKMIP2 Missense_Mutation p.K297N 0.20 deleterious(0) benign(0.354) TCGA-64-1679-01 5 148408068 148408068 C T SH3TC2 Silent p.E409E 0.21 TCGA-64-1679-01 5 150921889 150921889 A T FAT2 Silent p.A2933A 0.24 TCGA-64-1679-01 5 154179189 154179189 G C LARP1 Missense_Mutation p.E395D 0.09 tolerated(0.29) benign(0.117) TCGA-64-1679-01 5 156533689 156533689 G C HAVCR2 Missense_Mutation p.P115A 0.05 deleterious(0.01) possibly_damaging(0.642) TCGA-64-1679-01 5 167653121 167653121 G A TENM2 Missense_Mutation p.V1713M 0.10 deleterious(0.01) benign(0.406) TCGA-64-1679-01 5 172447784 172447784 G C ATP6V0E1 Intron 0.24 TCGA-64-1679-01 5 176003034 176003034 G T CDHR2 Missense_Mutation p.D348Y 0.26 deleterious(0) probably_damaging(1) TCGA-64-1679-01 5 180687697 180687699 AGA - TRIM52 In_Frame_Del p.F39del 0.23 TCGA-64-1679-01 5 23527197 23527197 G T PRDM9 Missense_Mutation p.R667M 0.12 deleterious(0.02) probably_damaging(0.991) TCGA-64-1679-01 5 26902674 26902674 G T CDH9 Nonsense_Mutation p.Y388* 0.04 TCGA-64-1679-01 5 33616054 33616054 C G ADAMTS12 Missense_Mutation p.G756A 0.11 deleterious(0.02) possibly_damaging(0.777) TCGA-64-1679-01 5 33649757 33649757 C A ADAMTS12 Silent p.V412V 0.05 TCGA-64-1679-01 5 34937456 34937456 G T DNAJC21 Missense_Mutation p.W155L 0.09 deleterious(0) probably_damaging(0.978) TCGA-64-1679-01 5 35066176 35066176 G T PRLR Missense_Mutation p.A295D 0.07 deleterious(0.01) possibly_damaging(0.894) TCGA-64-1679-01 5 35800100 35800100 A T SPEF2 Nonsense_Mutation p.K1621* 0.04 TCGA-64-1679-01 5 36677170 36677170 C A SLC1A3 Silent p.V248V 0.56 TCGA-64-1679-01 5 40972553 40972553 C A C7 Missense_Mutation p.P644H 0.12 deleterious(0) probably_damaging(0.992) TCGA-64-1679-01 5 41038949 41038949 G T MROH2B Silent p.V701V 0.07 TCGA-64-1679-01 5 41054884 41054884 A T MROH2B Silent p.G364G 0.13 TCGA-64-1679-01 5 41313735 41313735 C A PLCXD3 Missense_Mutation p.G317V 0.17 deleterious_low_confidence(0.02) benign(0.265) TCGA-64-1679-01 5 5237092 5237092 A C ADAMTS16 Missense_Mutation p.L678F 0.48 tolerated(0.64) benign(0.014) TCGA-64-1679-01 5 5489358 5489358 G A KIAA0947 Missense_Mutation p.R2239Q 0.06 deleterious(0.05) possibly_damaging(0.686) TCGA-64-1679-01 5 55407117 55407117 G T ANKRD55 Nonsense_Mutation p.C486* 0.27 TCGA-64-1679-01 5 68647801 68647801 A C RP11-1113N2.4 3'Flank 0.50 TCGA-64-1679-01 5 75427578 75427578 G T SV2C Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-64-1679-01 5 78328549 78328549 G T DMGDH Missense_Mutation p.P493Q 0.30 deleterious(0) probably_damaging(0.998) TCGA-64-1679-01 5 79030276 79030276 G T CMYA5 Missense_Mutation p.L1896F 0.16 probably_damaging(0.986) TCGA-64-1679-01 5 82834365 82834365 C G VCAN Missense_Mutation p.T1848S 0.24 tolerated(0.1) benign(0.091) TCGA-64-1679-01 6 100911461 100911461 A T SIM1 5'UTR 0.09 TCGA-64-1679-01 6 105192070 105192070 C T HACE1 Silent p.E826E 0.14 TCGA-64-1679-01 6 10874470 10874470 G T GCM2 Missense_Mutation p.P427T 0.18 tolerated(0.07) benign(0.066) TCGA-64-1679-01 6 109480491 109480491 C T CEP57L1 Missense_Mutation p.P281L 0.18 tolerated(0.25) benign(0.006) TCGA-64-1679-01 6 117127989 117127989 C T GPRC6A Missense_Mutation p.M293I 0.05 deleterious(0.02) benign(0.102) TCGA-64-1679-01 6 117632220 117632220 C A ROS1 Missense_Mutation p.G2066C 0.17 deleterious(0) probably_damaging(1) TCGA-64-1679-01 6 123332169 123332169 T C CLVS2 Silent p.S143S 0.13 TCGA-64-1679-01 6 129748969 129748969 G A LAMA2 Missense_Mutation p.E1980K 0.08 tolerated(0.13) benign(0.01) TCGA-64-1679-01 6 133045931 133045932 - A VNN3 3'UTR 0.25 TCGA-64-1679-01 6 133783546 133783546 G T EYA4 Missense_Mutation p.G171W 0.22 deleterious(0) probably_damaging(0.991) TCGA-64-1679-01 6 139170499 139170499 C A ECT2L Missense_Mutation p.L333M 0.20 deleterious(0) probably_damaging(0.982) TCGA-64-1679-01 6 144508591 144508591 G T STX11 Missense_Mutation p.R276L 0.23 tolerated(0.09) unknown(0) TCGA-64-1679-01 6 154410994 154410994 C - OPRM1 Frame_Shift_Del p.Y201* 0.23 TCGA-64-1679-01 6 159655446 159655446 G C FNDC1 Missense_Mutation p.R1301T 0.09 deleterious(0) unknown(0) TCGA-64-1679-01 6 160176510 160176510 C G WTAP Nonsense_Mutation p.S353* 0.12 TCGA-64-1679-01 6 160977168 160977168 C A LPA Missense_Mutation p.G1621V 0.18 deleterious(0) probably_damaging(1) TCGA-64-1679-01 6 167591903 167591903 C G TCP10L2 Missense_Mutation p.S177W 0.10 deleterious(0) probably_damaging(0.911) TCGA-64-1679-01 6 168443325 168443325 C A KIF25 Missense_Mutation p.A305D 0.20 deleterious(0) probably_damaging(0.999) TCGA-64-1679-01 6 17781518 17781518 C A KIF13A Missense_Mutation p.A1187S 0.13 tolerated(1) possibly_damaging(0.853) TCGA-64-1679-01 6 25777124 25777124 C T SLC17A4 Missense_Mutation p.S402F 0.19 tolerated(0.21) benign(0.055) TCGA-64-1679-01 6 25779404 25779404 C A SLC17A4 Missense_Mutation p.F494L 0.16 tolerated(1) benign(0) TCGA-64-1679-01 6 27114507 27114507 T A HIST1H2BK Missense_Mutation p.K24M 0.15 deleterious_low_confidence(0) benign(0.031) TCGA-64-1679-01 6 27775425 27775425 C G HIST1H2BL Missense_Mutation p.R87P 0.15 deleterious_low_confidence(0.01) benign(0.002) TCGA-64-1679-01 6 28541080 28541081 - T SCAND3 Frame_Shift_Ins p.K863Efs*10 0.11 TCGA-64-1679-01 6 29429716 29429716 T C OR2H1 Missense_Mutation p.M57T 0.26 deleterious(0) benign(0.298) TCGA-64-1679-01 6 29556084 29556084 C T OR2H2 Silent p.Y121Y 0.08 TCGA-64-1679-01 6 31638977 31638977 G T CSNK2B-LY6G5B-1181 Missense_Mutation p.R201I 0.16 deleterious_low_confidence(0) benign(0.002) TCGA-64-1679-01 6 31750199 31750199 C A VARS Missense_Mutation p.E671D 0.20 deleterious(0) probably_damaging(1) TCGA-64-1679-01 6 32629750 32629750 C A HLA-DQB1 Nonsense_Mutation p.E219* 0.20 TCGA-64-1679-01 6 33652441 33652441 G T ITPR3 Missense_Mutation p.D1705Y 0.23 deleterious(0.01) benign(0.305) TCGA-64-1679-01 6 36931029 36931029 C A PI16 Missense_Mutation p.P304Q 0.30 deleterious(0) possibly_damaging(0.587) TCGA-64-1679-01 6 37138394 37138394 G T PIM1 Missense_Mutation p.A15S 0.18 tolerated_low_confidence(0.74) benign(0.067) TCGA-64-1679-01 6 43098158 43098158 G A PTK7 Missense_Mutation p.D229N 0.07 tolerated(0.09) probably_damaging(0.973) TCGA-64-1679-01 6 43417878 43417878 G T ABCC10 3'UTR 0.19 TCGA-64-1679-01 6 43589437 43589437 G T GTPBP2 Silent p.R575R 0.15 TCGA-64-1679-01 6 44122119 44122119 A T TMEM63B Silent p.T748T 0.19 TCGA-64-1679-01 6 47846149 47846149 G T PTCHD4 Missense_Mutation p.P811T 0.16 deleterious(0.02) probably_damaging(0.997) TCGA-64-1679-01 6 47847065 47847065 G T PTCHD4 Silent p.A505A 0.23 TCGA-64-1679-01 6 50696992 50696992 G C TFAP2D Missense_Mutation p.A284P 0.04 deleterious(0) probably_damaging(0.974) TCGA-64-1679-01 6 51889991 51889991 C A PKHD1 Missense_Mutation p.Q1539H 0.22 tolerated(0.25) benign(0.049) TCGA-64-1679-01 6 71011744 71011744 G A COL9A1 Silent p.F16F 0.25 TCGA-64-1679-01 6 74530266 74530266 A G CD109 Missense_Mutation p.I1381V 0.24 tolerated(0.37) benign(0.035) TCGA-64-1679-01 6 7862687 7862687 G C BMP6 Missense_Mutation p.R387P 0.05 tolerated(0.06) probably_damaging(0.999) TCGA-64-1679-01 6 84765060 84765060 C A MRAP2 Missense_Mutation p.S8Y 0.21 deleterious(0.02) benign(0.106) TCGA-64-1679-01 6 84765061 84765061 T A MRAP2 Silent p.S8S 0.21 TCGA-64-1679-01 7 100771685 100771685 C G SERPINE1 Missense_Mutation p.S4C 0.19 deleterious(0.03) benign(0.033) TCGA-64-1679-01 7 1027059 1027059 C A CYP2W1 Silent p.P345P 0.29 TCGA-64-1679-01 7 103051925 103051925 C G SLC26A5 Missense_Mutation p.R171T 0.28 deleterious(0.02) probably_damaging(0.989) TCGA-64-1679-01 7 107564713 107564713 A T LAMB1 Missense_Mutation p.L1729H 0.17 deleterious(0.01) probably_damaging(1) TCGA-64-1679-01 7 107626637 107626637 G C LAMB1 Missense_Mutation p.P199A 0.17 deleterious(0) probably_damaging(1) TCGA-64-1679-01 7 112555434 112555434 C A C7orf60 Missense_Mutation p.A77S 0.19 tolerated(0.15) benign(0.206) TCGA-64-1679-01 7 120387741 120387741 C A KCND2 Silent p.S574S 0.22 TCGA-64-1679-01 7 120911459 120911459 G A CPED1 Missense_Mutation p.G948E 0.16 deleterious(0) probably_damaging(1) TCGA-64-1679-01 7 120935692 120935692 A G CPED1 Missense_Mutation p.K1023E 0.19 tolerated(0.32) benign(0.001) TCGA-64-1679-01 7 120935707 120935707 G T CPED1 3'UTR 0.26 TCGA-64-1679-01 7 123302771 123302771 C A LMOD2 Silent p.T377T 0.17 TCGA-64-1679-01 7 134260652 134260652 G T AKR1B15 Missense_Mutation p.S239I 0.14 deleterious(0) probably_damaging(0.993) TCGA-64-1679-01 7 142045406 142045406 G T TRBV4-2 Missense_Mutation p.G15V 0.07 deleterious(0.04) unknown(0) TCGA-64-1679-01 7 142131841 142131841 G T TRBV5-6 Missense_Mutation p.L13I 0.14 deleterious(0.04) possibly_damaging(0.635) TCGA-64-1679-01 7 143029957 143029957 C A CLCN1 Missense_Mutation p.F464L 0.25 tolerated(0.19) benign(0.405) TCGA-64-1679-01 7 143141281 143141281 C G TAS2R60 Missense_Mutation p.L246V 0.18 deleterious(0) possibly_damaging(0.69) TCGA-64-1679-01 7 146741074 146741074 C A CNTNAP2 Missense_Mutation p.R160S 0.22 deleterious(0) probably_damaging(0.999) TCGA-64-1679-01 7 14758281 14758281 G T DGKB Missense_Mutation p.P118T 0.21 tolerated(0.16) benign(0.005) TCGA-64-1679-01 7 151093213 151093213 G T WDR86 Missense_Mutation p.D125E 0.19 tolerated(0.08) benign(0.04) TCGA-64-1679-01 7 154237702 154237702 C A DPP6 Silent p.G181G 0.19 TCGA-64-1679-01 7 155295764 155295764 T C CNPY1 Nonstop_Mutation p.*93Wext*11 0.27 TCGA-64-1679-01 7 18625115 18625115 G A HDAC9 Silent p.Q78Q 0.20 TCGA-64-1679-01 7 20825372 20825372 C A SP8 Missense_Mutation p.A22S 0.34 deleterious(0) probably_damaging(0.923) TCGA-64-1679-01 7 28848929 28848929 G A CREB5 Silent p.R384R 0.19 TCGA-64-1679-01 7 32909054 32909054 T A KBTBD2 Missense_Mutation p.E592V 0.25 deleterious(0.02) benign(0.007) TCGA-64-1679-01 7 34971203 34971203 T A DPY19L1 Silent p.L670L 0.19 TCGA-64-1679-01 7 45650001 45650001 G T ADCY1 Silent p.L271L 0.18 TCGA-64-1679-01 7 48026950 48026950 C A SUN3 Missense_Mutation p.G351C 0.19 deleterious(0) probably_damaging(1) TCGA-64-1679-01 7 51095655 51095655 G A COBL Silent p.H1046H 0.18 TCGA-64-1679-01 7 6449644 6449644 G A DAGLB Missense_Mutation p.H615Y 0.07 tolerated(0.08) benign(0.081) TCGA-64-1679-01 7 73927187 73927187 G T GTF2IRD1 Nonsense_Mutation p.E51* 0.13 TCGA-64-1679-01 7 81599236 81599236 C A CACNA2D1 Missense_Mutation p.D757Y 0.19 deleterious(0) probably_damaging(0.995) TCGA-64-1679-01 7 86468419 86468419 T A GRM3 Missense_Mutation p.I530N 0.05 tolerated(0.31) possibly_damaging(0.893) TCGA-64-1679-01 7 93072917 93072917 C G CALCR Missense_Mutation p.W301C 0.17 deleterious(0) probably_damaging(1) TCGA-64-1679-01 7 98254454 98254454 C A NPTX2 Silent p.P288P 0.15 TCGA-64-1679-01 7 99654701 99654701 G C ZSCAN21 Silent p.L24L 0.03 TCGA-64-1679-01 8 103231152 103231152 C A RRM2B Missense_Mutation p.A192S 0.14 deleterious_low_confidence(0.02) benign(0.376) TCGA-64-1679-01 8 11412354 11412354 G A BLK Missense_Mutation p.R192Q 0.36 deleterious(0.02) benign(0.005) TCGA-64-1679-01 8 124383531 124383531 C A ATAD2 Missense_Mutation p.R195L 0.11 deleterious(0) probably_damaging(0.946) TCGA-64-1679-01 8 126448538 126448539 - TC TRIB1 Frame_Shift_Ins p.R316Lfs*5 0.10 TCGA-64-1679-01 8 143561100 143561100 G A BAI1 Nonsense_Mutation p.W591* 0.13 TCGA-64-1679-01 8 143561106 143561106 G A BAI1 Silent p.E593E 0.14 TCGA-64-1679-01 8 143562615 143562615 G C BAI1 Missense_Mutation p.G610A 0.16 deleterious(0.01) probably_damaging(0.939) TCGA-64-1679-01 8 143562715 143562715 G C BAI1 Missense_Mutation p.Q643H 0.21 tolerated(0.35) benign(0.216) TCGA-64-1679-01 8 1624783 1624783 C T DLGAP2 Nonsense_Mutation p.R683* 0.36 TCGA-64-1679-01 8 24298588 24298588 G T ADAM7 5'UTR 0.32 TCGA-64-1679-01 8 30210398 30210398 A C TUBBP1 RNA 0.06 TCGA-64-1679-01 8 51664620 51664620 C - SNTG1 Frame_Shift_Del p.S448Rfs*40 0.16 TCGA-64-1679-01 8 52284529 52284529 C A PXDNL Missense_Mutation p.A1269S 0.24 tolerated(0.75) benign(0.06) TCGA-64-1679-01 8 53586509 53586509 C G RB1CC1 Missense_Mutation p.D300H 0.23 deleterious(0.01) possibly_damaging(0.681) TCGA-64-1679-01 8 55537288 55537288 A T RP1 Missense_Mutation p.K282N 0.26 deleterious(0.02) probably_damaging(0.981) TCGA-64-1679-01 8 69028086 69028086 G A PREX2 Missense_Mutation p.S1082N 0.29 tolerated_low_confidence(0.08) benign(0.019) TCGA-64-1679-01 8 70539497 70539497 T C SULF1 Missense_Mutation p.S635P 0.18 deleterious(0) probably_damaging(0.997) TCGA-64-1679-01 8 70981559 70981559 C A PRDM14 Missense_Mutation p.E179D 0.24 tolerated(0.15) benign(0.017) TCGA-64-1679-01 8 72967791 72967791 C - TRPA1 Frame_Shift_Del p.S470Mfs*6 0.19 TCGA-64-1679-01 8 77765793 77765793 C T ZFHX4 Silent p.P2212P 0.16 TCGA-64-1679-01 9 113238450 113238450 C A SVEP1 Intron 0.36 TCGA-64-1679-01 9 116186556 116186556 C T C9orf43 Missense_Mutation p.S256F 0.11 deleterious(0) probably_damaging(0.998) TCGA-64-1679-01 9 118949903 118949904 - C PAPPA Frame_Shift_Ins p.W297Lfs*37 0.33 TCGA-64-1679-01 9 121976385 121976385 G A BRINP1 Missense_Mutation p.S245L 0.10 deleterious(0) benign(0.007) TCGA-64-1679-01 9 124751430 124751430 C A TTLL11 Intron 0.31 TCGA-64-1679-01 9 125315572 125315572 C G OR1N2 Missense_Mutation p.P42A 0.24 tolerated(0.28) benign(0.039) TCGA-64-1679-01 9 131469303 131469303 G T PKN3 Splice_Site p.X217_splice 0.30 TCGA-64-1679-01 9 132590422 132590422 C G C9orf78 3'UTR 0.21 TCGA-64-1679-01 9 136310172 136310172 A T ADAMTS13 Missense_Mutation p.H870L 0.22 tolerated(0.53) benign(0.001) TCGA-64-1679-01 9 139115958 139115958 C A QSOX2 Missense_Mutation p.G160V 0.33 tolerated(0.2) probably_damaging(0.986) TCGA-64-1679-01 9 27561600 27561600 A G C9orf72 Silent p.H216H 0.29 TCGA-64-1679-01 9 328021 328021 G C DOCK8 Splice_Site p.X299_splice 0.29 TCGA-64-1679-01 9 36118894 36118894 C G RECK Silent p.S798S 0.11 TCGA-64-1679-01 9 36369894 36369894 C T RNF38 Missense_Mutation p.R131H 0.18 deleterious(0) probably_damaging(0.962) TCGA-64-1679-01 9 8449761 8449761 G T PTPRD Missense_Mutation p.P1318T 0.24 deleterious(0) probably_damaging(0.997) TCGA-64-1679-01 9 84607683 84607683 G A SPATA31D1 Missense_Mutation p.M766I 0.16 deleterious(0.04) benign(0.001) TCGA-64-1679-01 9 90535409 90535409 C A SPATA31C1 RNA 0.27 TCGA-64-1679-01 9 91994486 91994486 C G SEMA4D Silent p.L574L 0.10 TCGA-64-1679-01 9 95069173 95069173 T G NOL8 Missense_Mutation p.K940N 0.29 deleterious(0) benign(0.41) TCGA-64-1679-01 X 102333559 102333559 C A NXF3 Silent p.V460V 0.04 TCGA-64-1679-01 X 102979084 102979084 C A GLRA4 Missense_Mutation p.G139V 0.29 deleterious(0.03) probably_damaging(0.971) TCGA-64-1679-01 X 105905439 105905439 C T CXorf57 Nonsense_Mutation p.Q725* 0.21 TCGA-64-1679-01 X 106331911 106331911 C G RBM41 Missense_Mutation p.G228R 0.21 tolerated(0.18) benign(0.125) TCGA-64-1679-01 X 108684624 108684624 G T GUCY2F Missense_Mutation p.L553I 0.27 tolerated(0.38) probably_damaging(0.978) TCGA-64-1679-01 X 117900509 117900509 G T IL13RA1 Missense_Mutation p.C282F 0.04 deleterious(0.05) probably_damaging(0.985) TCGA-64-1679-01 X 125299247 125299247 G T DCAF12L2 Silent p.R221R 0.24 TCGA-64-1679-01 X 130218269 130218269 C T ARHGAP36 Silent p.S212S 0.26 TCGA-64-1679-01 X 134713926 134713926 G T DDX26B Missense_Mutation p.G741V 0.18 deleterious(0.04) benign(0.301) TCGA-64-1679-01 X 13680883 13680883 G T TCEANC Missense_Mutation p.A116S 0.17 tolerated(1) benign(0.003) TCGA-64-1679-01 X 151303839 151303839 T A MAGEA10 Missense_Mutation p.Q85L 0.22 deleterious(0.02) benign(0.25) TCGA-64-1679-01 X 151819033 151819033 G T GABRQ Missense_Mutation p.R297S 0.23 deleterious(0) probably_damaging(1) TCGA-64-1679-01 X 151900060 151900060 G C MAGEA12 Silent p.T247T 0.21 TCGA-64-1679-01 X 151900061 151900061 G A MAGEA12 Missense_Mutation p.T247I 0.21 deleterious(0.01) possibly_damaging(0.739) TCGA-64-1679-01 X 153049525 153049525 C A SRPK3 Missense_Mutation p.S335Y 0.25 deleterious(0.02) possibly_damaging(0.608) TCGA-64-1679-01 X 18627664 18627664 C A CDKL5 Missense_Mutation p.P709Q 0.11 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-64-1679-01 X 26212698 26212698 G A MAGEB6 Silent p.V245V 0.17 TCGA-64-1679-01 X 27765740 27765740 T A DCAF8L2 Missense_Mutation p.L243Q 0.13 deleterious(0) probably_damaging(1) TCGA-64-1679-01 X 27998837 27998837 G T DCAF8L1 Missense_Mutation p.N205K 0.19 deleterious(0) probably_damaging(0.995) TCGA-64-1679-01 X 2931179 2931179 G C ARSH Silent p.L102L 0.11 TCGA-64-1679-01 X 46322201 46322201 G C KRBOX4 Missense_Mutation p.D12H 0.17 deleterious(0) possibly_damaging(0.585) TCGA-64-1679-01 X 48369726 48369726 G A PORCN Silent p.G60G 0.13 TCGA-64-1679-01 X 54275171 54275171 G A WNK3 Silent p.L1204L 0.18 TCGA-64-1679-01 X 54784218 54784218 C T ITIH6 Silent p.V763V 0.07 TCGA-64-1679-01 X 55033290 55033290 C A APEX2 Missense_Mutation p.R327S 0.08 deleterious(0.01) benign(0.217) TCGA-64-1679-01 X 55514457 55514457 C A USP51 Nonsense_Mutation p.E306* 0.05 TCGA-64-1679-01 X 68382632 68382632 C A PJA1 Missense_Mutation p.K150N 0.31 tolerated(0.14) benign(0.003) TCGA-64-1679-01 X 7171273 7171273 G T STS Silent p.L16L 0.20 TCGA-64-1679-01 X 71856209 71856209 C T PHKA1 Missense_Mutation p.G496E 0.16 deleterious(0) probably_damaging(0.999) TCGA-64-1679-01 X 71856210 71856210 C A PHKA1 Nonsense_Mutation p.G496* 0.16 TCGA-64-1679-01 X 73044420 73044420 G - XIST RNA 0.32 TCGA-64-1679-01 X 84510461 84510461 G T ZNF711 Silent p.A92A 0.26 TCGA-64-1679-01 X 90691151 90691151 C A PABPC5 Missense_Mutation p.T192N 0.22 tolerated(0.3) benign(0.004) TCGA-64-1679-01 X 91873442 91873442 C A PCDH11X Missense_Mutation p.Q1183K 0.25 tolerated_low_confidence(0.66) benign(0) TCGA-64-1680-01 10 11047331 11047331 G A RP1-251M9.3 3'Flank 0.27 TCGA-64-1680-01 10 124399784 124399786 TCC - DMBT1 In_Frame_Del p.S2264del 0.38 TCGA-64-1680-01 10 15697389 15697389 C A ITGA8 Missense_Mutation p.G322V 0.10 deleterious(0) probably_damaging(1) TCGA-64-1680-01 10 8106012 8106012 G A GATA3 Missense_Mutation p.G279S 0.19 tolerated(0.06) benign(0.316) TCGA-64-1680-01 10 98742267 98742267 G A C10orf12 Missense_Mutation p.D374N 0.08 tolerated(0.21) benign(0.023) TCGA-64-1680-01 11 5364346 5364346 T A OR51B5 Missense_Mutation p.T137S 0.26 tolerated(1) benign(0.002) TCGA-64-1680-01 11 64534716 64534716 G T SF1 Nonsense_Mutation p.Y575* 0.19 TCGA-64-1680-01 12 100466570 100466570 G A UHRF1BP1L Missense_Mutation p.R477C 0.20 deleterious(0.01) possibly_damaging(0.893) TCGA-64-1680-01 12 111352074 111352074 C T MYL2 Missense_Mutation p.E64K 0.09 tolerated(0.23) benign(0.308) TCGA-64-1680-01 12 123311052 123311052 C T CCDC62 3'UTR 0.22 TCGA-64-1680-01 13 33225967 33225967 G A PDS5B Missense_Mutation p.M45I 0.05 deleterious(0) benign(0.139) TCGA-64-1680-01 13 49076005 49076005 C T RCBTB2 Splice_Site p.X373_splice 0.06 TCGA-64-1680-01 14 70924778 70924778 G C ADAM21 Missense_Mutation p.E188Q 0.09 tolerated(1) benign(0.002) TCGA-64-1680-01 15 24922679 24922679 C T NPAP1 Silent p.S555S 0.05 TCGA-64-1680-01 15 75115013 75115013 G A LMAN1L Missense_Mutation p.G388R 0.12 deleterious(0.05) benign(0.172) TCGA-64-1680-01 15 91449666 91449666 C G MAN2A2 Silent p.S258S 0.18 TCGA-64-1680-01 16 20996932 20996932 C G DNAH3 Missense_Mutation p.E2378Q 0.04 deleterious(0.02) possibly_damaging(0.608) TCGA-64-1680-01 16 31502203 31502203 C G C16orf58 Missense_Mutation p.E454Q 0.04 deleterious(0.04) possibly_damaging(0.688) TCGA-64-1680-01 16 67425086 67425086 T C TPPP3 5'UTR 0.37 TCGA-64-1680-01 16 726739 726739 A G RHBDL1 Missense_Mutation p.D155G 0.16 tolerated(0.1) benign(0.058) TCGA-64-1680-01 16 9858028 9858028 C A GRIN2A Nonsense_Mutation p.E1125* 0.08 TCGA-64-1680-01 17 37619172 37619172 C T CDK12 Missense_Mutation p.S283L 0.08 unknown(0) TCGA-64-1680-01 17 56573109 56573109 C A MTMR4 Missense_Mutation p.M798I 0.21 tolerated_low_confidence(0.48) benign(0.002) TCGA-64-1680-01 17 78328041 78328041 G C RNF213 Intron 0.10 TCGA-64-1680-01 18 61304926 61304926 C G SERPINB4 3'UTR 0.09 TCGA-64-1680-01 18 6311632 6311632 C A L3MBTL4 5'UTR 0.05 TCGA-64-1680-01 19 44111665 44111665 C T ZNF428 3'UTR 0.25 TCGA-64-1680-01 19 9204692 9204692 G A OR1M1 Missense_Mutation p.V258I 0.18 deleterious(0.03) probably_damaging(0.997) TCGA-64-1680-01 1 1159219 1159219 G A SDF4 Silent p.D152D 0.24 TCGA-64-1680-01 1 151260444 151260444 C G ZNF687 Missense_Mutation p.I559M 0.37 deleterious(0) probably_damaging(1) TCGA-64-1680-01 1 155932776 155932776 C A ARHGEF2 Missense_Mutation p.G308V 0.13 tolerated(0.05) benign(0.032) TCGA-64-1680-01 1 186413131 186413131 C A PDC Nonsense_Mutation p.E241* 0.03 TCGA-64-1680-01 1 204410669 204410669 T C PIK3C2B Missense_Mutation p.N1060S 0.16 deleterious(0.01) possibly_damaging(0.872) TCGA-64-1680-01 1 230931001 230931001 C T CAPN9 Silent p.L655L 0.05 TCGA-64-1680-01 1 32207725 32207725 G A BAI2 Missense_Mutation p.A449V 0.24 tolerated(0.18) benign(0.322) TCGA-64-1680-01 1 32672097 32672099 TCT - IQCC Intron 0.25 TCGA-64-1680-01 1 47685630 47685630 C T TAL1 Missense_Mutation p.R253Q 0.14 tolerated(0.07) possibly_damaging(0.714) TCGA-64-1680-01 1 6610657 6610657 T A NOL9 Missense_Mutation p.I139F 0.12 tolerated(0.06) benign(0.11) TCGA-64-1680-01 20 20322542 20322542 C T C20orf26 Missense_Mutation p.R1164C 0.26 deleterious(0) probably_damaging(0.972) TCGA-64-1680-01 20 50139845 50139845 G A NFATC2 Missense_Mutation p.T312M 0.09 deleterious(0) benign(0.304) TCGA-64-1680-01 20 55909089 55909089 G A SPO11 Missense_Mutation p.V150I 0.19 tolerated(0.09) possibly_damaging(0.826) TCGA-64-1680-01 21 40778294 40778294 G T LCA5L Silent p.G509G 0.27 TCGA-64-1680-01 21 44524456 44524456 G A U2AF1 Missense_Mutation p.S34F 0.35 deleterious(0) possibly_damaging(0.835) TCGA-64-1680-01 22 25010819 25010819 C G GGT1 Missense_Mutation p.H81D 0.09 deleterious(0) possibly_damaging(0.55) TCGA-64-1680-01 2 120209616 120209616 G C SCTR Missense_Mutation p.I297M 0.12 deleterious(0) possibly_damaging(0.736) TCGA-64-1680-01 2 141072616 141072616 C G LRP1B Missense_Mutation p.E4231D 0.05 benign(0.217) TCGA-64-1680-01 2 196664038 196664038 T A DNAH7 Silent p.L3445L 0.19 TCGA-64-1680-01 2 223066081 223066081 G A PAX3 Intron 0.18 TCGA-64-1680-01 2 241451413 241451413 G A ANKMY1 Silent p.D628D 0.15 TCGA-64-1680-01 2 62104098 62104098 T G CCT4 Missense_Mutation p.K245T 0.10 deleterious(0.02) possibly_damaging(0.896) TCGA-64-1680-01 3 100009497 100009497 T G TBC1D23 Silent p.S184S 0.05 TCGA-64-1680-01 3 10401606 10401606 G A ATP2B2 Missense_Mutation p.R621C 0.35 deleterious(0.01) probably_damaging(0.956) TCGA-64-1680-01 3 108076844 108076844 A G HHLA2 Missense_Mutation p.N280S 0.03 tolerated(0.33) benign(0.059) TCGA-64-1680-01 3 127785935 127785935 C T SEC61A1 Nonsense_Mutation p.Q306* 0.22 TCGA-64-1680-01 3 68802078 68802078 G C FAM19A4 Silent p.V74V 0.06 TCGA-64-1680-01 4 100532564 100532564 T C MTTP Missense_Mutation p.L648P 0.36 deleterious(0.02) possibly_damaging(0.756) TCGA-64-1680-01 4 104640578 104640578 G A TACR3 Silent p.I85I 0.07 TCGA-64-1680-01 5 140801620 140801620 G A PCDHGA11 Missense_Mutation p.G276R 0.15 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-64-1680-01 5 167850949 167850949 C T WWC1 Silent p.L562L 0.15 TCGA-64-1680-01 5 70837459 70837459 A C BDP1 Missense_Mutation p.R2067S 0.21 tolerated(0.11) benign(0.194) TCGA-64-1680-01 6 146126568 146126568 G A FBXO30 Missense_Mutation p.S325L 0.27 tolerated(0.32) benign(0.001) TCGA-64-1680-01 6 30574350 30574350 C G PPP1R10 Missense_Mutation p.E177Q 0.06 deleterious(0.02) probably_damaging(0.979) TCGA-64-1680-01 6 41774070 41774070 C T USP49 Missense_Mutation p.D218N 0.33 tolerated(0.48) benign(0.164) TCGA-64-1680-01 6 43184061 43184061 C T CUL9 Silent p.G2034G 0.22 TCGA-64-1680-01 6 78172847 78172847 C A HTR1B Missense_Mutation p.A92S 0.18 deleterious(0) probably_damaging(0.999) TCGA-64-1680-01 6 84270599 84270599 C G SNAP91 Missense_Mutation p.G837A 0.16 tolerated(0.11) probably_damaging(0.991) TCGA-64-1680-01 7 107013191 107013191 G A COG5 Silent p.V259V 0.15 TCGA-64-1680-01 7 133943059 133943059 C T LRGUK Missense_Mutation p.P750L 0.07 tolerated(0.38) benign(0.009) TCGA-64-1680-01 7 135377051 135377051 G C SLC13A4 Intron 0.07 TCGA-64-1680-01 7 139791810 139791810 C - KDM7A Frame_Shift_Del p.S842Ifs*23 0.30 TCGA-64-1680-01 7 30008662 30008662 A G SCRN1 Missense_Mutation p.Y28H 0.37 tolerated(0.35) benign(0.429) TCGA-64-1680-01 7 99796183 99796183 G A STAG3 Missense_Mutation p.A444T 0.15 deleterious(0) probably_damaging(0.966) TCGA-64-1680-01 8 145640272 145640272 C T SLC39A4 Silent p.L271L 0.17 TCGA-64-1680-01 8 80677881 80677881 G A HEY1 Nonsense_Mutation p.R157* 0.06 TCGA-64-1680-01 9 120475310 120475310 G C TLR4 Missense_Mutation p.D302H 0.05 tolerated(0.11) possibly_damaging(0.655) TCGA-64-1680-01 9 130829073 130829073 C G NAIF1 Missense_Mutation p.G103A 0.09 tolerated_low_confidence(0.07) benign(0.003) TCGA-64-1680-01 9 136671295 136671295 G A VAV2 Silent p.I248I 0.10 TCGA-64-1680-01 X 100604833 100604833 G T BTK 3'UTR 0.11 TCGA-64-1680-01 X 153631085 153631087 AGC - DNASE1L1 In_Frame_Del p.L291del 0.36 TCGA-64-1680-01 X 37028695 37028695 C G FAM47C Missense_Mutation p.L738V 0.06 tolerated(0.13) benign(0.124) TCGA-64-1681-01 10 55892725 55892725 A T PCDH15 Missense_Mutation p.N609K 0.23 deleterious(0.05) possibly_damaging(0.686) TCGA-64-1681-01 10 72539466 72539466 C A TBATA Missense_Mutation p.D104Y 0.15 deleterious(0) probably_damaging(0.986) TCGA-64-1681-01 11 108139190 108139190 T G ATM Missense_Mutation p.L898V 0.13 tolerated(0.05) possibly_damaging(0.878) TCGA-64-1681-01 11 124013245 124013245 G T VWA5A Missense_Mutation p.S707I 0.05 deleterious(0.01) benign(0.181) TCGA-64-1681-01 11 55371540 55371540 A T OR4C11 Missense_Mutation p.L104I 0.09 tolerated(0.1) benign(0.007) TCGA-64-1681-01 11 55861485 55861485 G A OR8I2 Silent p.Q234Q 0.11 TCGA-64-1681-01 11 65064634 65064634 A C POLA2 Missense_Mutation p.K564T 0.24 tolerated(0.05) possibly_damaging(0.882) TCGA-64-1681-01 11 65064645 65064645 G A POLA2 Missense_Mutation p.G568R 0.26 deleterious(0) probably_damaging(0.997) TCGA-64-1681-01 11 66358974 66358974 C T CCDC87 Missense_Mutation p.D505N 0.06 tolerated(0.41) benign(0.004) TCGA-64-1681-01 12 108985233 108985233 C T TMEM119 3'UTR 0.47 TCGA-64-1681-01 12 124497263 124497263 G C ZNF664 Missense_Mutation p.R191T 0.17 deleterious(0) probably_damaging(0.946) TCGA-64-1681-01 12 132508429 132508429 A C EP400 Missense_Mutation p.T1600P 0.16 unknown(0) TCGA-64-1681-01 12 53776134 53776134 G C SP1 Missense_Mutation p.E135Q 0.06 tolerated(0.51) possibly_damaging(0.727) TCGA-64-1681-01 12 6344416 6344416 T - CD9 Frame_Shift_Del p.Y125Tfs*8 0.23 TCGA-64-1681-01 12 81741325 81741325 C G PPFIA2 Missense_Mutation p.G740A 0.08 tolerated(0.06) probably_damaging(0.98) TCGA-64-1681-01 14 22294191 22294191 A C TRAV10 Missense_Mutation p.T99P 0.16 deleterious(0.03) benign(0.191) TCGA-64-1681-01 14 33291281 33291281 A T AKAP6 Missense_Mutation p.K1421M 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.798) TCGA-64-1681-01 14 94088785 94088785 T C UNC79 Missense_Mutation p.S1559P 0.19 tolerated_low_confidence(0.06) benign(0) TCGA-64-1681-01 15 75714964 75714964 C T SIN3A Intron 0.13 TCGA-64-1681-01 16 11272339 11272339 C G CLEC16A Missense_Mutation p.P985R 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-64-1681-01 16 24580583 24580583 G A RBBP6 Missense_Mutation p.E858K 0.10 deleterious_low_confidence(0) unknown(0) TCGA-64-1681-01 16 27640151 27640151 G T KIAA0556 Missense_Mutation p.D104Y 0.10 tolerated(0.05) probably_damaging(0.919) TCGA-64-1681-01 16 3119263 3119263 C G IL32 Silent p.L158L 0.34 TCGA-64-1681-01 16 49669988 49669988 G T ZNF423 Nonsense_Mutation p.C1025* 0.32 TCGA-64-1681-01 16 5057380 5057380 C T SEC14L5 Missense_Mutation p.P489S 0.08 deleterious(0) probably_damaging(1) TCGA-64-1681-01 16 66998528 66998528 C T CES3 Silent p.V239V 0.15 TCGA-64-1681-01 17 10317241 10317241 T C MYH8 Silent p.Q375Q 0.15 TCGA-64-1681-01 17 39742987 39742987 C T KRT14 Missense_Mutation p.V34I 0.40 tolerated(0.43) unknown(0) TCGA-64-1681-01 17 54672168 54672168 C T NOG Missense_Mutation p.S195F 0.15 tolerated(0.07) possibly_damaging(0.75) TCGA-64-1681-01 17 67280103 67280103 C A ABCA5 Missense_Mutation p.D795Y 0.19 deleterious(0) probably_damaging(1) TCGA-64-1681-01 17 7578392 7578392 C T TP53 Missense_Mutation p.E180K 0.48 deleterious(0) probably_damaging(1) TCGA-64-1681-01 18 30926360 30926360 T C CCDC178 Missense_Mutation p.E158G 0.05 deleterious(0) possibly_damaging(0.608) TCGA-64-1681-01 19 16899898 16899898 T G NWD1 Missense_Mutation p.F946C 0.09 deleterious(0) possibly_damaging(0.831) TCGA-64-1681-01 19 37117555 37117555 G T ZNF382 Missense_Mutation p.K252N 0.08 deleterious(0.04) possibly_damaging(0.628) TCGA-64-1681-01 19 3762687 3762687 C A MRPL54 5'UTR 0.20 TCGA-64-1681-01 19 48922564 48922564 C T GRIN2D Silent p.I603I 0.35 TCGA-64-1681-01 19 52249869 52249869 C T FPR1 Missense_Mutation p.V127I 0.23 tolerated(0.05) possibly_damaging(0.858) TCGA-64-1681-01 19 53741643 53741643 C G ZNF677 Missense_Mutation p.D113H 0.04 deleterious(0.01) possibly_damaging(0.766) TCGA-64-1681-01 19 57883181 57883181 A G ZNF547 Missense_Mutation p.Y19C 0.05 deleterious(0.04) probably_damaging(0.961) TCGA-64-1681-01 1 114447405 114447405 G C AP4B1 5'UTR 0.12 TCGA-64-1681-01 1 12835688 12835688 G A PRAMEF12 Missense_Mutation p.R97Q 0.05 deleterious(0.02) benign(0.001) TCGA-64-1681-01 1 144931348 144931348 G C PDE4DIP Intron 0.06 TCGA-64-1681-01 1 158324373 158324373 G T CD1E Nonsense_Mutation p.E89* 0.12 TCGA-64-1681-01 1 158549495 158549495 A C OR10X1 Silent p.T65T 0.07 TCGA-64-1681-01 1 159023414 159023414 A C IFI16 Missense_Mutation p.N670T 0.05 tolerated(0.23) benign(0.061) TCGA-64-1681-01 1 15906588 15906589 - T AGMAT Frame_Shift_Ins p.H176Afs*36 0.13 TCGA-64-1681-01 1 16344500 16344500 G C HSPB7 5'UTR 0.33 TCGA-64-1681-01 1 234743032 234743034 TGA - IRF2BP2 In_Frame_Del p.I538del 0.48 TCGA-64-1681-01 1 247978985 247978985 G C OR14A16 Missense_Mutation p.S16C 0.08 deleterious(0) probably_damaging(0.927) TCGA-64-1681-01 1 248756568 248756568 A C OR2T10 Missense_Mutation p.F168V 0.06 deleterious(0.01) possibly_damaging(0.461) TCGA-64-1681-01 1 27106069 27106069 C T ARID1A Nonsense_Mutation p.Q1894* 0.47 TCGA-64-1681-01 1 3428235 3428235 G A MEGF6 Silent p.I331I 0.10 TCGA-64-1681-01 1 44133491 44133493 AGA - KDM4A In_Frame_Del p.R322del 0.23 TCGA-64-1681-01 1 6186807 6186807 C T CHD5 Splice_Site p.X1302_splice 0.07 TCGA-64-1681-01 1 89271718 89271718 T A PKN2 Intron 0.07 TCGA-64-1681-01 1 9783217 9783217 C T PIK3CD Missense_Mutation p.R821C 0.04 deleterious(0.04) benign(0.005) TCGA-64-1681-01 20 32659989 32659989 G C RALY Missense_Mutation p.D37H 0.06 deleterious(0) probably_damaging(0.995) TCGA-64-1681-01 20 32659995 32659995 G A RALY Missense_Mutation p.E39K 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-64-1681-01 20 40747110 40747110 C T PTPRT Nonsense_Mutation p.W972* 0.05 TCGA-64-1681-01 20 44052918 44052918 C T PIGT Nonsense_Mutation p.Q433* 0.06 TCGA-64-1681-01 20 44053148 44053148 C T PIGT Silent p.L471L 0.12 TCGA-64-1681-01 20 44207950 44207950 C T WFDC8 5'UTR 0.15 TCGA-64-1681-01 21 38533142 38533142 G T TTC3 Missense_Mutation p.K1026N 0.12 deleterious(0) probably_damaging(1) TCGA-64-1681-01 21 38593804 38593804 G T DSCR3 3'Flank 0.05 TCGA-64-1681-01 22 19455447 19455447 T C UFD1L Missense_Mutation p.K124R 0.07 tolerated(0.24) benign(0.266) TCGA-64-1681-01 22 29879474 29879474 C G NEFH Missense_Mutation p.L332V 0.22 deleterious(0.05) unknown(0) TCGA-64-1681-01 2 241815373 241815373 C G AGXT Silent p.V266V 0.19 TCGA-64-1681-01 2 85554445 85554445 G A TGOLN2 Missense_Mutation p.T137I 0.03 deleterious(0.02) possibly_damaging(0.702) TCGA-64-1681-01 3 10103867 10103867 C G FANCD2 Missense_Mutation p.A600G 0.27 tolerated(0.4) benign(0.008) TCGA-64-1681-01 3 132434047 132434047 G A NPHP3 Missense_Mutation p.A280V 0.07 tolerated(0.09) possibly_damaging(0.493) TCGA-64-1681-01 3 148858052 148858052 G C HPS3 Missense_Mutation p.S160T 0.48 tolerated(0.95) benign(0.001) TCGA-64-1681-01 4 134084247 134084247 C A PCDH10 Missense_Mutation p.S971R 0.26 deleterious(0.03) probably_damaging(0.993) TCGA-64-1681-01 4 184241270 184241270 C G CLDN22 Missense_Mutation p.K34N 0.05 deleterious(0) probably_damaging(0.968) TCGA-64-1681-01 4 22394281 22394281 G A GPR125 Silent p.A838A 0.05 TCGA-64-1681-01 4 41984513 41984513 C T DCAF4L1 Missense_Mutation p.T235M 0.14 tolerated(0.48) benign(0.005) TCGA-64-1681-01 4 96166259 96166259 A G UNC5C Missense_Mutation p.V271A 0.06 tolerated(1) benign(0.001) TCGA-64-1681-01 5 140257099 140257099 G A PCDHA12 Missense_Mutation p.R681Q 0.06 tolerated_low_confidence(0.1) benign(0.047) TCGA-64-1681-01 5 179292299 179292299 T C TBC1D9B Silent p.K1009K 0.12 TCGA-64-1681-01 6 130762216 130762216 C T TMEM200A Missense_Mutation p.R217W 0.23 deleterious_low_confidence(0.02) benign(0.226) TCGA-64-1681-01 6 13306666 13306666 C T TBC1D7 Silent p.L253L 0.08 TCGA-64-1681-01 6 142732479 142732479 A T GPR126 Silent p.A824A 0.13 TCGA-64-1681-01 6 6145903 6145903 T C F13A1 Silent p.R716R 0.15 TCGA-64-1681-01 7 158447365 158447365 C G NCAPG2 Missense_Mutation p.D890H 0.14 deleterious(0) probably_damaging(1) TCGA-64-1681-01 7 55259515 55259515 T G EGFR Missense_Mutation p.L858R 0.32 deleterious(0) probably_damaging(1) TCGA-64-1681-01 7 93055614 93055614 C G CALCR 3'UTR 0.08 TCGA-64-1681-01 8 103287796 103287796 C T UBR5 Missense_Mutation p.E2228K 0.16 deleterious(0.03) possibly_damaging(0.824) TCGA-64-1681-01 8 21977361 21977361 G A HR Silent p.C963C 0.07 TCGA-64-1681-01 8 33449509 33449509 C T DUSP26 3'UTR 0.17 TCGA-64-1681-01 8 42828457 42828457 C G HOOK3 Missense_Mutation p.S383C 0.12 deleterious(0) probably_damaging(0.923) TCGA-64-1681-01 8 53588991 53588991 C T RB1CC1 Silent p.K170K 0.12 TCGA-64-1681-01 8 72267066 72267066 G A EYA1 Silent p.L25L 0.17 TCGA-64-1681-01 9 100388080 100388080 G C TSTD2 Nonsense_Mutation p.S122* 0.05 TCGA-64-1681-01 9 101900299 101900299 G A TGFBR1 Missense_Mutation p.E245K 0.17 deleterious(0) probably_damaging(1) TCGA-64-1681-01 9 111701692 111701692 G A FAM206A Silent p.V122V 0.14 TCGA-64-1681-01 9 77277459 77277459 G C RORB Missense_Mutation p.A277P 0.23 deleterious(0) probably_damaging(1) TCGA-64-1681-01 X 100611180 100611180 A T BTK Missense_Mutation p.Y476N 0.32 deleterious(0) probably_damaging(0.987) TCGA-64-1681-01 X 112035062 112035062 G A AMOT Nonsense_Mutation p.Q642* 0.24 TCGA-64-1681-01 X 11682889 11682889 G T ARHGAP6 Missense_Mutation p.S20R 0.44 tolerated_low_confidence(0.07) benign(0.147) TCGA-64-1681-01 X 11778598 11778598 A C MSL3 Silent p.R88R 0.05 TCGA-64-1681-01 X 117819804 117819804 C T DOCK11 3'UTR 0.18 TCGA-64-1681-01 X 129159037 129159037 A G BCORL1 Missense_Mutation p.E1254G 0.07 probably_damaging(0.998) TCGA-64-1681-01 X 153994220 153994220 A G DKC1 Silent p.T70T 0.04 TCGA-64-1681-01 X 154133104 154133104 A C F8 Nonsense_Mutation p.Y1856* 0.09 TCGA-64-1681-01 X 19051731 19051731 C T GPR64 Missense_Mutation p.G102S 0.23 tolerated_low_confidence(0.06) possibly_damaging(0.721) TCGA-64-1681-01 X 23411590 23411590 A C PTCHD1 Missense_Mutation p.K652T 0.04 deleterious(0) probably_damaging(0.998) TCGA-64-1681-01 X 41555242 41555242 A G GPR34 Missense_Mutation p.K119R 0.05 tolerated(0.5) benign(0.005) TCGA-64-1681-01 X 50376205 50376205 A C SHROOM4 Silent p.T956T 0.46 TCGA-64-1681-01 X 55479158 55479158 G C MAGEH1 Missense_Mutation p.K117N 0.04 tolerated_low_confidence(0.06) probably_damaging(0.937) TCGA-64-1681-01 X 63412533 63412533 G A AMER1 Missense_Mutation p.P212S 0.05 tolerated(0.22) benign(0.005) TCGA-64-1681-01 X 92965237 92965237 T A FAM133A 3'UTR 0.05 TCGA-64-5774-01 10 120095077 120095077 C T FAM204A Missense_Mutation p.R104H 0.62 tolerated(0.07) benign(0.02) TCGA-64-5774-01 10 16982064 16982064 T C CUBN Missense_Mutation p.S1839G 0.74 deleterious(0.03) possibly_damaging(0.803) TCGA-64-5774-01 10 24874156 24874156 G A ARHGAP21 Missense_Mutation p.R1688W 0.26 deleterious(0) probably_damaging(0.999) TCGA-64-5774-01 10 31815998 31815998 G T ZEB1 Missense_Mutation p.G1062W 0.67 deleterious_low_confidence(0.01) benign(0.001) TCGA-64-5774-01 10 38343661 38343661 T C ZNF33A Silent p.H203H 0.23 TCGA-64-5774-01 11 102816458 102816458 A G MMP13 Missense_Mutation p.I411T 0.32 tolerated(0.32) benign(0.001) TCGA-64-5774-01 11 103907704 103907704 C A DDI1 Silent p.R52R 0.71 TCGA-64-5774-01 11 108153446 108153446 A T ATM Nonsense_Mutation p.K1196* 0.72 TCGA-64-5774-01 11 123756006 123756006 C T TMEM225 Missense_Mutation p.A43T 0.37 tolerated(0.58) benign(0.075) TCGA-64-5774-01 11 124135545 124135545 A T OR8G5 Missense_Mutation p.T275S 0.36 deleterious(0) probably_damaging(1) TCGA-64-5774-01 11 46419198 46419198 C A AMBRA1 Missense_Mutation p.W1143C 0.71 deleterious_low_confidence(0.04) possibly_damaging(0.634) TCGA-64-5774-01 11 48267190 48267190 C A OR4X2 Missense_Mutation p.L179I 0.53 deleterious(0.02) probably_damaging(0.999) TCGA-64-5774-01 11 55904448 55904448 C A OR8J3 Silent p.T249T 0.58 TCGA-64-5774-01 11 5968696 5968696 C A OR56A3 Silent p.L40L 0.78 TCGA-64-5774-01 11 61533653 61533653 C A MYRF Missense_Mutation p.P120T 0.36 deleterious(0.04) benign(0.049) TCGA-64-5774-01 11 6477727 6477727 C A TRIM3 Missense_Mutation p.R410L 0.74 deleterious(0.01) possibly_damaging(0.655) TCGA-64-5774-01 11 6478565 6478565 C G TRIM3 Silent p.L219L 0.67 TCGA-64-5774-01 11 76162966 76162966 G T C11orf30 Missense_Mutation p.K45N 0.59 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-64-5774-01 11 76372262 76372262 G A LRRC32 Silent p.R125R 0.50 TCGA-64-5774-01 11 83170879 83170879 G T DLG2 Silent p.P970P 0.28 TCGA-64-5774-01 11 83177805 83177805 G T DLG2 Missense_Mutation p.A892D 0.21 deleterious(0) probably_damaging(0.998) TCGA-64-5774-01 11 89531774 89531774 C A TRIM49 Nonsense_Mutation p.E295* 0.30 TCGA-64-5774-01 11 9096031 9096031 C - SCUBE2 Frame_Shift_Del p.E172Kfs*4 0.11 TCGA-64-5774-01 12 113554954 113554954 G T RASAL1 Missense_Mutation p.P219T 0.60 tolerated(0.41) benign(0.139) TCGA-64-5774-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.58 deleterious(0.04) probably_damaging(0.993) TCGA-64-5774-01 12 49419995 49419995 C A KMT2D Missense_Mutation p.D5252Y 0.13 unknown(0) TCGA-64-5774-01 12 57081865 57081865 G T PTGES3 5'UTR 0.76 TCGA-64-5774-01 12 64061909 64061909 G T DPY19L2 Missense_Mutation p.L89M 0.59 tolerated_low_confidence(0.13) benign(0.049) TCGA-64-5774-01 12 7942298 7942298 G A NANOG Missense_Mutation p.G30R 0.34 tolerated(0.11) benign(0.012) TCGA-64-5774-01 12 8073847 8073847 C A SLC2A3 3'UTR 0.26 TCGA-64-5774-01 12 9305844 9305844 C T PZP Silent p.Q1290Q 0.26 TCGA-64-5774-01 12 96107067 96107067 T C NTN4 Missense_Mutation p.Q305R 0.21 deleterious(0) benign(0.297) TCGA-64-5774-01 13 114507949 114507949 G T TMEM255B Missense_Mutation p.R254L 0.85 tolerated(0.57) benign(0.168) TCGA-64-5774-01 14 102699137 102699137 G C MOK Intron 0.36 TCGA-64-5774-01 14 19563567 19563567 T G POTEG Intron 0.06 TCGA-64-5774-01 14 22564609 22564609 G T TRDV1 Silent p.V20V 0.39 TCGA-64-5774-01 14 23894904 23894904 C G MYH7 Missense_Mutation p.K762N 0.35 deleterious(0) probably_damaging(1) TCGA-64-5774-01 14 39560913 39560913 C A SEC23A Missense_Mutation p.G124V 0.50 tolerated(0.15) benign(0.007) TCGA-64-5774-01 14 50272777 50272777 G T NEMF Silent p.R607R 0.57 TCGA-64-5774-01 14 74036534 74036534 G C ACOT2 Missense_Mutation p.R197P 0.62 deleterious(0) benign(0.226) TCGA-64-5774-01 14 88652098 88652098 G - KCNK10 Frame_Shift_Del p.E472Rfs*38 0.31 TCGA-64-5774-01 15 101865129 101865129 C T PCSK6 Missense_Mutation p.R767H 0.18 deleterious(0.01) benign(0.035) TCGA-64-5774-01 15 22369186 22369186 G T OR4M2 Missense_Mutation p.G204V 0.71 deleterious(0) probably_damaging(1) TCGA-64-5774-01 15 52188673 52188673 G A TMOD3 Missense_Mutation p.V229M 0.38 deleterious(0) probably_damaging(0.956) TCGA-64-5774-01 16 2338079 2338079 C A ABCA3 Missense_Mutation p.E984D 0.42 tolerated(0.36) benign(0.02) TCGA-64-5774-01 16 3406340 3406340 G A OR2C1 Missense_Mutation p.A134T 0.37 tolerated(0.47) benign(0) TCGA-64-5774-01 16 4790576 4790576 G A C16orf71 Silent p.A233A 0.35 TCGA-64-5774-01 16 48256677 48256677 C A ABCC11 Silent p.V203V 0.29 TCGA-64-5774-01 16 67322099 67322099 G T PLEKHG4 Missense_Mutation p.A1084S 0.23 tolerated(1) benign(0.007) TCGA-64-5774-01 16 784383 784383 C T NARFL Intron 0.33 TCGA-64-5774-01 16 85946755 85946755 A G IRF8 Missense_Mutation p.M156V 0.35 tolerated(0.17) benign(0.001) TCGA-64-5774-01 17 10212976 10212976 G A MYH13 Missense_Mutation p.R1610C 0.33 deleterious(0) possibly_damaging(0.861) TCGA-64-5774-01 17 10426814 10426814 C T MYH2 Missense_Mutation p.R1824K 0.32 tolerated(0.15) benign(0.047) TCGA-64-5774-01 17 34072791 34072791 G T GAS2L2 Silent p.S575S 0.22 TCGA-64-5774-01 17 36873066 36873066 G T MLLT6 Missense_Mutation p.A495S 0.17 tolerated(0.48) unknown(0) TCGA-64-5774-01 17 39021155 39021155 C T KRT12 Missense_Mutation p.R237Q 0.23 deleterious(0.02) benign(0.328) TCGA-64-5774-01 17 40962818 40962818 C A BECN1 Missense_Mutation p.W438L 0.21 deleterious(0) probably_damaging(1) TCGA-64-5774-01 17 42857162 42857162 C A ADAM11 3'UTR 0.23 TCGA-64-5774-01 17 4337281 4337281 G T SPNS3 Missense_Mutation p.A7S 0.43 tolerated(0.31) benign(0.046) TCGA-64-5774-01 17 44950100 44950100 A T WNT9B Missense_Mutation p.N99Y 0.13 deleterious(0) probably_damaging(0.976) TCGA-64-5774-01 17 47299555 47299555 C A ABI3 Missense_Mutation p.P302H 0.67 deleterious(0) possibly_damaging(0.893) TCGA-64-5774-01 17 6358848 6358850 GCG AA PITPNM3 Frame_Shift_Del p.A912Cfs*183 0.53 TCGA-64-5774-01 17 76503840 76503840 G A DNAH17 Silent p.H1424H 0.27 TCGA-64-5774-01 17 8791618 8791618 C T PIK3R5 Missense_Mutation p.A496T 0.34 tolerated(0.54) benign(0.155) TCGA-64-5774-01 18 22804516 22804516 C T ZNF521 Silent p.E1122E 0.57 TCGA-64-5774-01 19 13418663 13418663 T - CACNA1A Frame_Shift_Del p.N640Ifs*18 0.55 TCGA-64-5774-01 19 2337525 2337525 C A SPPL2B RNA 0.79 TCGA-64-5774-01 19 30314605 30314605 G C CCNE1 Missense_Mutation p.R385T 0.32 tolerated(0.24) possibly_damaging(0.711) TCGA-64-5774-01 19 30314606 30314606 G T CCNE1 Missense_Mutation p.R385S 0.32 tolerated(0.35) possibly_damaging(0.802) TCGA-64-5774-01 19 31770491 31770491 G T TSHZ3 Missense_Mutation p.H70N 0.32 deleterious(0.01) benign(0.396) TCGA-64-5774-01 19 55331209 55331209 C T KIR3DL1 Silent p.L133L 0.56 TCGA-64-5774-01 19 56466759 56466759 G A NLRP8 Silent p.K445K 0.43 TCGA-64-5774-01 19 58232780 58232781 CC T ZNF671 Frame_Shift_Del p.G225Tfs*5 0.11 TCGA-64-5774-01 19 6306758 6306758 G T ACER1 Nonsense_Mutation p.Y254* 0.83 TCGA-64-5774-01 1 142803524 142803524 T A RP11-423O2.5 RNA 0.06 TCGA-64-5774-01 1 151677546 151677546 G T CELF3 Silent p.R457R 0.41 TCGA-64-5774-01 1 155912009 155912009 C A RXFP4 Missense_Mutation p.A170D 0.23 tolerated(0.05) possibly_damaging(0.543) TCGA-64-5774-01 1 158605807 158605807 T A SPTA1 Silent p.A1776A 0.41 TCGA-64-5774-01 1 158747003 158747003 A C OR6N2 Missense_Mutation p.C141W 0.20 deleterious(0) probably_damaging(0.971) TCGA-64-5774-01 1 160771628 160771628 G A LY9 Intron 0.48 TCGA-64-5774-01 1 185985107 185985107 G T HMCN1 Missense_Mutation p.G1643C 0.43 possibly_damaging(0.548) TCGA-64-5774-01 1 205052919 205052919 C A TMEM81 Missense_Mutation p.G177V 0.38 deleterious(0) probably_damaging(0.98) TCGA-64-5774-01 1 211276891 211276891 G A KCNH1 Missense_Mutation p.T86I 0.21 tolerated(0.06) benign(0.285) TCGA-64-5774-01 1 223567018 223567018 C A C1orf65 Silent p.T67T 0.46 TCGA-64-5774-01 1 228554800 228554800 G T OBSCN Missense_Mutation p.A7475S 0.42 benign(0.135) TCGA-64-5774-01 1 237057847 237057847 G T MTR Missense_Mutation p.R1132L 0.32 deleterious(0) probably_damaging(1) TCGA-64-5774-01 1 24419571 24419571 C A MYOM3 Missense_Mutation p.R319L 0.87 tolerated(0.76) benign(0.341) TCGA-64-5774-01 1 35570213 35570213 G T ZMYM1 Missense_Mutation p.C217F 0.75 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-64-5774-01 1 64114274 64114274 G C PGM1 Missense_Mutation p.D429H 0.06 deleterious(0.02) possibly_damaging(0.808) TCGA-64-5774-01 20 1559087 1559087 G T RP4-576H24.4 Silent p.I109I 0.32 TCGA-64-5774-01 20 29847303 29847304 - A DEFB115 Frame_Shift_Ins p.R46Kfs*8 0.30 TCGA-64-5774-01 20 30408221 30408221 G A MYLK2 Silent p.Q115Q 0.41 TCGA-64-5774-01 20 42331478 42331478 G T MYBL2 Missense_Mutation p.D434Y 0.32 deleterious(0) probably_damaging(0.996) TCGA-64-5774-01 20 44685923 44685923 C A SLC12A5 Missense_Mutation p.N1103K 0.12 deleterious(0.04) possibly_damaging(0.641) TCGA-64-5774-01 20 45355567 45355567 C G SLC2A10 Missense_Mutation p.C451W 0.04 deleterious(0) probably_damaging(0.998) TCGA-64-5774-01 20 50244178 50244178 T C ATP9A Silent p.A602A 0.21 TCGA-64-5774-01 20 57769769 57769769 C A ZNF831 Missense_Mutation p.T1232N 0.10 deleterious(0.04) benign(0.153) TCGA-64-5774-01 20 60913645 60913645 T A LAMA5 Silent p.A499A 0.61 TCGA-64-5774-01 21 19638462 19638462 G T CHODL 3'UTR 0.91 TCGA-64-5774-01 21 28315732 28315732 C A ADAMTS5 Missense_Mutation p.A458S 0.34 tolerated(0.35) benign(0.027) TCGA-64-5774-01 21 43187057 43187057 C T RIPK4 Missense_Mutation p.A49T 0.56 deleterious(0) probably_damaging(0.996) TCGA-64-5774-01 21 47556403 47556403 G T FTCD 3'UTR 0.84 TCGA-64-5774-01 22 26165124 26165124 A T MYO18B Missense_Mutation p.K414M 0.56 deleterious_low_confidence(0) possibly_damaging(0.792) TCGA-64-5774-01 22 38046636 38046636 C T SH3BP1 Missense_Mutation p.S501F 0.30 tolerated(0.42) benign(0.002) TCGA-64-5774-01 22 41568503 41568503 G T EP300 Missense_Mutation p.D1485Y 0.23 probably_damaging(0.999) TCGA-64-5774-01 2 10927471 10927471 G A PDIA6 Missense_Mutation p.R365C 0.38 deleterious(0) possibly_damaging(0.886) TCGA-64-5774-01 2 131356362 131356362 C A CFC1 Missense_Mutation p.G34C 0.26 deleterious(0.01) possibly_damaging(0.624) TCGA-64-5774-01 2 135756462 135756462 G T MAP3K19 Silent p.P140P 0.20 TCGA-64-5774-01 2 15742716 15742716 G T DDX1 Nonsense_Mutation p.E118* 0.36 TCGA-64-5774-01 2 158142621 158142621 G T GALNT5 Missense_Mutation p.R572S 0.19 deleterious(0.03) probably_damaging(0.98) TCGA-64-5774-01 2 175622341 175622341 G C CHRNA1 Missense_Mutation p.H124Q 0.51 deleterious(0.01) benign(0.158) TCGA-64-5774-01 2 189927933 189927933 C A COL5A2 Missense_Mutation p.G612W 0.46 probably_damaging(1) TCGA-64-5774-01 2 241536200 241536200 G T CAPN10 Silent p.T528T 0.47 TCGA-64-5774-01 2 241727615 241727615 C A KIF1A Missense_Mutation p.Q72H 0.36 deleterious(0.04) benign(0.161) TCGA-64-5774-01 2 25468194 25468194 G A DNMT3A Silent p.C494C 0.30 TCGA-64-5774-01 2 25468195 25468195 C G DNMT3A Missense_Mutation p.C494S 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-64-5774-01 2 50779824 50779824 G T NRXN1 Missense_Mutation p.L594M 0.41 tolerated(0.16) possibly_damaging(0.63) TCGA-64-5774-01 2 77745683 77745683 T C LRRTM4 Missense_Mutation p.M438V 0.55 tolerated(0.57) benign(0.001) TCGA-64-5774-01 3 102189285 102189285 G T ZPLD1 Missense_Mutation p.W343C 0.67 tolerated(0.06) possibly_damaging(0.513) TCGA-64-5774-01 3 118949056 118949056 A G B4GALT4 5'UTR 0.54 TCGA-64-5774-01 3 122259566 122259566 C G PARP9 Missense_Mutation p.Q541H 0.05 deleterious(0.03) benign(0.043) TCGA-64-5774-01 3 138219359 138219359 G A CEP70 Silent p.F473F 0.42 TCGA-64-5774-01 3 185251403 185251403 C T LIPH Missense_Mutation p.G161E 0.33 deleterious(0) probably_damaging(0.992) TCGA-64-5774-01 3 88040430 88040430 C A HTR1F Missense_Mutation p.D177E 0.78 tolerated(0.07) probably_damaging(0.91) TCGA-64-5774-01 3 9948463 9948463 A T IL17RE Missense_Mutation p.H147L 0.06 deleterious(0.02) benign(0.218) TCGA-64-5774-01 4 184605873 184605874 - TATC TRAPPC11 Frame_Shift_Ins p.R484Lfs*4 0.19 TCGA-64-5774-01 4 46125866 46125866 C G GABRG1 Missense_Mutation p.R22T 0.11 tolerated(0.28) possibly_damaging(0.879) TCGA-64-5774-01 4 66231689 66231689 C G EPHA5 Missense_Mutation p.E671Q 0.54 deleterious(0.01) benign(0.02) TCGA-64-5774-01 4 71346861 71346861 C A MUC7 Missense_Mutation p.Q134K 0.38 tolerated(0.32) possibly_damaging(0.728) TCGA-64-5774-01 4 83740219 83740219 C T SEC31A 3'UTR 0.19 TCGA-64-5774-01 4 96761794 96761794 G A PDHA2 Missense_Mutation p.V165I 0.29 deleterious(0.02) benign(0.26) TCGA-64-5774-01 5 115783135 115783135 G A SEMA6A Missense_Mutation p.P756L 0.46 deleterious(0) probably_damaging(0.999) TCGA-64-5774-01 5 13717423 13717423 C A DNAH5 Splice_Site p.X4235_splice 0.44 TCGA-64-5774-01 5 13717424 13717424 C A DNAH5 Missense_Mutation p.K4235N 0.41 possibly_damaging(0.728) TCGA-64-5774-01 5 140176284 140176284 G T PCDHA2 Nonsense_Mutation p.E579* 0.54 TCGA-64-5774-01 5 140559407 140559407 G T PCDHB8 Missense_Mutation p.G598C 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-64-5774-01 5 140588899 140588899 A T PCDHB12 Missense_Mutation p.L140F 0.53 deleterious_low_confidence(0.01) possibly_damaging(0.795) TCGA-64-5774-01 5 140741968 140741968 G T PCDHGB2 Missense_Mutation p.V756F 0.56 tolerated(0.12) possibly_damaging(0.646) TCGA-64-5774-01 5 149584134 149584134 G T SLC6A7 Missense_Mutation p.A458S 0.18 tolerated(0.06) benign(0.206) TCGA-64-5774-01 5 156964936 156964936 G C ADAM19 Silent p.T105T 0.32 TCGA-64-5774-01 5 175923528 175923528 A G FAF2 Missense_Mutation p.M235V 0.46 tolerated(0.37) benign(0.004) TCGA-64-5774-01 5 24511534 24511534 C A CDH10 Missense_Mutation p.A302S 0.20 deleterious(0.02) probably_damaging(0.994) TCGA-64-5774-01 5 78964730 78964730 G T PAPD4 Missense_Mutation p.A363S 0.36 tolerated(0.67) benign(0) TCGA-64-5774-01 5 83525673 83525673 C A EDIL3 Missense_Mutation p.G76C 0.22 deleterious(0.03) probably_damaging(0.936) TCGA-64-5774-01 6 102516291 102516291 A T GRIK2 Nonsense_Mutation p.K878* 0.64 TCGA-64-5774-01 6 107019974 107019974 C A RTN4IP1 Missense_Mutation p.R363L 0.72 tolerated(0.77) benign(0.016) TCGA-64-5774-01 6 36882185 36882185 G C C6orf89 Missense_Mutation p.E184Q 0.47 tolerated(0.63) benign(0.22) TCGA-64-5774-01 6 42984763 42984763 G C KLHDC3 Intron 0.44 TCGA-64-5774-01 6 53785527 53785527 G C LRRC1 Missense_Mutation p.E462Q 0.33 deleterious(0.02) benign(0.316) TCGA-64-5774-01 7 100054363 100054363 C T C7orf61 3'UTR 0.62 TCGA-64-5774-01 7 100680531 100680531 C A MUC17 Missense_Mutation p.T1945N 0.26 unknown(0) TCGA-64-5774-01 7 100682994 100682994 C G MUC17 Missense_Mutation p.S2766C 0.53 unknown(0) TCGA-64-5774-01 7 116955207 116955207 C T WNT2 Missense_Mutation p.R169H 0.30 deleterious(0) possibly_damaging(0.771) TCGA-64-5774-01 7 131912252 131912252 A G PLXNA4 Missense_Mutation p.S614P 0.13 deleterious(0.04) probably_damaging(0.999) TCGA-64-5774-01 7 131912276 131912276 C T PLXNA4 Missense_Mutation p.V606M 0.28 tolerated(0.11) benign(0.02) TCGA-64-5774-01 7 141833894 141833894 G A RP11-1220K2.2 Missense_Mutation p.R230H 0.43 deleterious(0.02) benign(0.012) TCGA-64-5774-01 7 143055984 143055984 C G FAM131B Silent p.V134V 0.38 TCGA-64-5774-01 7 14741308 14741308 A - DGKB Frame_Shift_Del p.S172Rfs*3 0.17 TCGA-64-5774-01 7 21628977 21628977 T C DNAH11 Missense_Mutation p.F709L 0.26 benign(0.001) TCGA-64-5774-01 7 2740046 2740046 G T AMZ1 5'UTR 0.23 TCGA-64-5774-01 7 44080552 44080552 C A DBNL 5'Flank 0.15 TCGA-64-5774-01 8 110454418 110454418 A T PKHD1L1 Missense_Mutation p.T1463S 0.81 tolerated(0.31) benign(0.005) TCGA-64-5774-01 8 126085512 126085512 G A KIAA0196 Silent p.L345L 0.19 TCGA-64-5774-01 8 1496873 1496873 C A DLGAP2 Missense_Mutation p.S5Y 0.38 deleterious(0.01) possibly_damaging(0.498) TCGA-64-5774-01 8 1497432 1497432 C A DLGAP2 Missense_Mutation p.H191Q 0.50 tolerated(1) benign(0.038) TCGA-64-5774-01 8 1497586 1497586 G T DLGAP2 Missense_Mutation p.V243L 0.42 tolerated(0.67) benign(0.001) TCGA-64-5774-01 8 24813612 24813612 C T CTD-2168K21.2 5'Flank 0.60 TCGA-64-5774-01 8 3087578 3087578 G T CSMD1 Missense_Mutation p.D1443E 0.12 probably_damaging(0.999) TCGA-64-5774-01 8 32453386 32453386 G T NRG1 Silent p.S47S 0.61 TCGA-64-5774-01 8 43159892 43159892 C A RNU6-104P 3'Flank 0.50 TCGA-64-5774-01 8 61777733 61777733 G T CHD7 Silent p.L2745L 0.36 TCGA-64-5774-01 8 61777734 61777734 G T CHD7 Missense_Mutation p.V2746L 0.36 benign(0.006) TCGA-64-5774-01 8 7340141 7340141 C T DEFB106B Silent p.G61G 0.11 TCGA-64-5774-01 9 139091689 139091689 T C LHX3 Missense_Mutation p.I102V 0.70 deleterious(0.01) possibly_damaging(0.747) TCGA-64-5774-01 9 37537272 37537272 C T FBXO10 Silent p.K418K 0.38 TCGA-64-5774-01 9 74340552 74340552 G T TMEM2 Missense_Mutation p.P708Q 0.33 deleterious(0.01) benign(0.129) TCGA-64-5774-01 9 90535445 90535445 C A SPATA31C1 RNA 0.33 TCGA-64-5774-01 X 101623732 101623732 C T NXF2B Silent p.K210K 0.35 TCGA-64-5774-01 X 135428901 135428901 T C GPR112 Silent p.T1012T 0.84 TCGA-64-5774-01 X 149638350 149638350 G T MAMLD1 Missense_Mutation p.V144L 0.87 tolerated(1) benign(0.013) TCGA-64-5774-01 X 151869776 151869776 G T MAGEA6 Missense_Mutation p.D156Y 0.86 deleterious(0) possibly_damaging(0.81) TCGA-64-5774-01 X 151870260 151870260 G C MAGEA6 3'UTR 0.42 TCGA-64-5774-01 X 34150162 34150162 G T FAM47A Silent p.L78L 0.27 TCGA-64-5774-01 X 34648384 34648384 C A TMEM47 3'UTR 0.43 TCGA-64-5775-01 10 101978830 101978830 C A CHUK Silent p.G208G 0.37 TCGA-64-5775-01 10 102894055 102894055 G T TLX1 Missense_Mutation p.R231L 0.35 deleterious(0) probably_damaging(0.997) TCGA-64-5775-01 10 120802195 120802195 C G EIF3A Missense_Mutation p.R946T 0.42 tolerated(0.06) possibly_damaging(0.803) TCGA-64-5775-01 10 127441455 127441455 A G EDRF1 Missense_Mutation p.Q1122R 0.31 tolerated(1) benign(0.001) TCGA-64-5775-01 10 131666055 131666055 C T EBF3 Silent p.V292V 0.46 TCGA-64-5775-01 10 135352302 135352302 G T CYP2E1 Missense_Mutation p.G439V 0.37 deleterious(0) probably_damaging(1) TCGA-64-5775-01 10 26436361 26436361 C T MYO3A Silent p.V836V 0.58 TCGA-64-5775-01 10 37451731 37451731 C A ANKRD30A Missense_Mutation p.P597T 0.70 tolerated(0.59) benign(0.044) TCGA-64-5775-01 10 37454033 37454033 C A ANKRD30A Missense_Mutation p.P616T 0.67 tolerated(0.61) possibly_damaging(0.908) TCGA-64-5775-01 10 44112653 44112653 G T ZNF485 Missense_Mutation p.G388W 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-64-5775-01 10 45799823 45799823 G A OR13A1 Silent p.P16P 0.47 TCGA-64-5775-01 10 55581535 55581535 C A PCDH15 3'UTR 0.30 TCGA-64-5775-01 10 56106127 56106127 G T PCDH15 Missense_Mutation p.P198T 0.41 tolerated(0.12) possibly_damaging(0.633) TCGA-64-5775-01 10 73572631 73572631 G A CDH23 Missense_Mutation p.R966H 0.62 deleterious_low_confidence(0) possibly_damaging(0.54) TCGA-64-5775-01 10 81317230 81317230 C A SFTPA2 Missense_Mutation p.R161L 0.25 tolerated(0.18) benign(0.072) TCGA-64-5775-01 10 81319205 81319205 A - SFTPA2 Frame_Shift_Del p.L12* 0.35 TCGA-64-5775-01 10 81371615 81371615 T - SFTPA1 Frame_Shift_Del p.L27* 0.13 TCGA-64-5775-01 10 88702973 88702973 T C MMRN2 Missense_Mutation p.D523G 0.31 tolerated(0.07) benign(0.03) TCGA-64-5775-01 10 90670738 90670738 C T STAMBPL1 Silent p.N130N 0.19 TCGA-64-5775-01 10 92678728 92678728 G T ANKRD1 Missense_Mutation p.T116K 0.48 tolerated(0.93) benign(0.119) TCGA-64-5775-01 10 95557473 95557473 C T LGI1 Silent p.S529S 0.33 TCGA-64-5775-01 10 98778737 98778737 C A SLIT1 Intron 0.35 TCGA-64-5775-01 11 108137952 108137952 G T ATM Missense_Mutation p.D841Y 0.51 deleterious(0) possibly_damaging(0.839) TCGA-64-5775-01 11 111796798 111796798 G A C11orf52 Missense_Mutation p.V83M 0.61 deleterious(0) probably_damaging(0.963) TCGA-64-5775-01 11 113853842 113853842 C A HTR3A Missense_Mutation p.F131L 0.54 tolerated(0.13) benign(0.045) TCGA-64-5775-01 11 118390412 118390412 C G KMT2A Missense_Mutation p.H3742Q 0.60 probably_damaging(0.998) TCGA-64-5775-01 11 119005060 119005060 A T HINFP Missense_Mutation p.Q469L 0.52 deleterious(0.03) benign(0.159) TCGA-64-5775-01 11 122017300 122017300 C G MIRLET7A2 RNA 0.22 TCGA-64-5775-01 11 122850161 122850161 C - BSX Frame_Shift_Del p.M89Ifs*66 0.54 TCGA-64-5775-01 11 123894507 123894507 C T OR10G9 Missense_Mutation p.S263F 0.09 deleterious(0.01) probably_damaging(1) TCGA-64-5775-01 11 1464734 1464734 G T BRSK2 Missense_Mutation p.D263Y 0.70 deleterious(0) probably_damaging(0.991) TCGA-64-5775-01 11 1651688 1651688 A T KRTAP5-5 Silent p.S206S 0.63 TCGA-64-5775-01 11 17794029 17794029 C A KCNC1 Missense_Mutation p.P463Q 0.20 deleterious(0.03) possibly_damaging(0.851) TCGA-64-5775-01 11 17794031 17794031 C T KCNC1 Missense_Mutation p.P464S 0.21 deleterious(0.05) probably_damaging(1) TCGA-64-5775-01 11 20939797 20939797 C A NELL1 Missense_Mutation p.H225N 0.16 deleterious(0.02) benign(0.024) TCGA-64-5775-01 11 26682071 26682071 G T ANO3 3'UTR 0.50 TCGA-64-5775-01 11 32414272 32414272 C A WT1 Missense_Mutation p.D427Y 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-64-5775-01 11 34097814 34097814 G C CAPRIN1 Missense_Mutation p.R133P 0.15 deleterious(0) probably_damaging(0.991) TCGA-64-5775-01 11 43348161 43348161 G T API5 Missense_Mutation p.E285D 0.25 tolerated(0.14) benign(0.208) TCGA-64-5775-01 11 4674333 4674333 G T OR51E1 Missense_Mutation p.D193Y 0.19 deleterious(0) benign(0.183) TCGA-64-5775-01 11 51516152 51516152 C A OR4C46 Missense_Mutation p.Q291K 0.16 deleterious_low_confidence(0) benign(0.18) TCGA-64-5775-01 11 55135976 55135976 T A OR4A15 Missense_Mutation p.L206Q 0.17 deleterious_low_confidence(0.01) probably_damaging(0.926) TCGA-64-5775-01 11 57886584 57886584 C T OR9I1 Silent p.E111E 0.17 TCGA-64-5775-01 11 59857214 59857214 G A MS4A2 Missense_Mutation p.G36S 0.61 tolerated(0.73) probably_damaging(0.934) TCGA-64-5775-01 11 60776153 60776153 G T CD6 Missense_Mutation p.W206L 0.58 deleterious(0.04) possibly_damaging(0.67) TCGA-64-5775-01 11 61040724 61040724 C A VWCE Missense_Mutation p.R549L 0.16 tolerated(0.71) benign(0.005) TCGA-64-5775-01 11 61077401 61077401 T C DDB1 Silent p.E811E 0.18 TCGA-64-5775-01 11 62293785 62293785 T A AHNAK Missense_Mutation p.I2702F 0.19 benign(0.001) TCGA-64-5775-01 11 6244992 6244992 G A FAM160A2 Missense_Mutation p.R209C 0.65 deleterious(0) possibly_damaging(0.878) TCGA-64-5775-01 11 66359007 66359007 C A CCDC87 Missense_Mutation p.V494F 0.50 deleterious(0) possibly_damaging(0.621) TCGA-64-5775-01 11 66392833 66392833 G T RBM14 Missense_Mutation p.G496C 0.67 deleterious(0) unknown(0) TCGA-64-5775-01 11 68773568 68773568 G C MRGPRF Silent p.G70G 0.23 TCGA-64-5775-01 11 71850763 71850763 G A FOLR3 Missense_Mutation p.C251Y 0.66 deleterious(0) probably_damaging(0.993) TCGA-64-5775-01 11 85593700 85593700 C A CCDC83 Missense_Mutation p.Q109K 0.16 tolerated(0.36) benign(0.021) TCGA-64-5775-01 11 89944475 89944475 G C CHORDC1 Missense_Mutation p.P114R 0.61 deleterious(0) possibly_damaging(0.885) TCGA-64-5775-01 11 9466809 9466809 G T IPO7 3'UTR 0.13 TCGA-64-5775-01 12 109609686 109609686 G T ACACB Silent p.L334L 0.80 TCGA-64-5775-01 12 109680382 109680382 G T ACACB Silent p.P1721P 0.74 TCGA-64-5775-01 12 111785649 111785649 C A CUX2 Silent p.P1327P 0.08 TCGA-64-5775-01 12 112622286 112622286 C A HECTD4 Missense_Mutation p.C3349F 0.44 benign(0.264) TCGA-64-5775-01 12 126138981 126138981 A G TMEM132B Missense_Mutation p.S988G 0.78 tolerated(1) benign(0.002) TCGA-64-5775-01 12 131487810 131487810 G A GPR133 Silent p.T369T 0.74 TCGA-64-5775-01 12 13906583 13906583 G T GRIN2B Silent p.P226P 0.70 TCGA-64-5775-01 12 1399138 1399138 G C ERC1 Missense_Mutation p.A914P 0.13 tolerated(0.06) probably_damaging(0.999) TCGA-64-5775-01 12 14804340 14804340 C A GUCY2C Splice_Site p.X570_splice 0.12 TCGA-64-5775-01 12 1994018 1994018 G T CACNA2D4 Nonsense_Mutation p.C396* 0.78 TCGA-64-5775-01 12 250283 250283 C T IQSEC3 Intron 0.13 TCGA-64-5775-01 12 25380276 25380276 T A KRAS Missense_Mutation p.Q61L 0.78 deleterious(0) probably_damaging(0.94) TCGA-64-5775-01 12 2794913 2794913 A T CACNA1C Missense_Mutation p.Q1910L 0.59 tolerated_low_confidence(0.28) benign(0.003) TCGA-64-5775-01 12 29617627 29617627 C T OVCH1 Silent p.R646R 0.73 TCGA-64-5775-01 12 4736526 4736526 C A AKAP3 Missense_Mutation p.E514D 0.31 tolerated(0.15) benign(0.133) TCGA-64-5775-01 12 48134736 48134736 T A RAPGEF3 Missense_Mutation p.T671S 0.47 deleterious(0.05) possibly_damaging(0.783) TCGA-64-5775-01 12 5154280 5154280 C A KCNA5 Missense_Mutation p.P323T 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-64-5775-01 12 53071971 53071971 C T KRT1 Silent p.E281E 0.72 TCGA-64-5775-01 12 55759343 55759343 G T OR6C75 Missense_Mutation p.G150V 0.86 deleterious_low_confidence(0.01) possibly_damaging(0.873) TCGA-64-5775-01 12 55846340 55846340 G T OR6C2 Missense_Mutation p.A115S 0.70 deleterious_low_confidence(0.03) benign(0.201) TCGA-64-5775-01 13 102527578 102527578 C A FGF14 Missense_Mutation p.D93Y 0.33 deleterious(0.03) probably_damaging(0.979) TCGA-64-5775-01 13 113773184 113773184 C A F7 Silent p.I421I 0.27 TCGA-64-5775-01 13 21549289 21549289 G A LATS2 Missense_Mutation p.P996L 0.22 tolerated(0.05) probably_damaging(1) TCGA-64-5775-01 13 25840081 25840081 C A MTMR6 Missense_Mutation p.C156F 0.22 deleterious(0) probably_damaging(0.998) TCGA-64-5775-01 13 25881941 25881941 A T NUPL1 Intron 0.44 TCGA-64-5775-01 13 36385036 36385037 CG T DCLK1 Frame_Shift_Del p.D541Efs*35 0.24 TCGA-64-5775-01 13 39430390 39430390 G T FREM2 Missense_Mutation p.M2351I 0.18 tolerated(0.8) benign(0) TCGA-64-5775-01 13 39621177 39621177 G T NHLRC3 Missense_Mutation p.V227L 0.65 tolerated(0.06) possibly_damaging(0.677) TCGA-64-5775-01 13 41345263 41345263 T C MRPS31 Missense_Mutation p.R4G 0.43 deleterious_low_confidence(0) possibly_damaging(0.828) TCGA-64-5775-01 13 42142415 42142415 C A VWA8 Missense_Mutation p.R1879L 0.26 deleterious(0) probably_damaging(0.983) TCGA-64-5775-01 13 46726995 46726995 T - LCP1 Frame_Shift_Del p.K220Sfs*29 0.21 TCGA-64-5775-01 13 48986493 48986493 T A LPAR6 Missense_Mutation p.M23L 0.53 tolerated(0.2) benign(0.002) TCGA-64-5775-01 13 48986494 48986494 G T LPAR6 Nonsense_Mutation p.C22* 0.52 TCGA-64-5775-01 13 58207410 58207410 G T PCDH17 Nonsense_Mutation p.E244* 0.56 TCGA-64-5775-01 13 88329901 88329901 C A SLITRK5 Missense_Mutation p.P753H 0.20 deleterious(0) probably_damaging(0.996) TCGA-64-5775-01 14 19553544 19553544 T C POTEG Missense_Mutation p.V43A 0.09 deleterious_low_confidence(0) benign(0.174) TCGA-64-5775-01 14 22580379 22580379 C T TRAV25 Silent p.L2L 0.20 TCGA-64-5775-01 14 33015489 33015489 C - AKAP6 Frame_Shift_Del p.P544Hfs*88 0.47 TCGA-64-5775-01 14 42356124 42356124 G T LRFN5 Missense_Mutation p.R99L 0.26 deleterious(0.02) probably_damaging(0.947) TCGA-64-5775-01 14 61113223 61113223 C A SIX1 Silent p.P211P 0.84 TCGA-64-5775-01 14 71500153 71500153 G T PCNX Missense_Mutation p.W1189L 0.86 deleterious(0.01) possibly_damaging(0.493) TCGA-64-5775-01 14 77715175 77715175 G C TMEM63C Silent p.V610V 0.15 TCGA-64-5775-01 14 93275695 93275695 A C GOLGA5 Missense_Mutation p.K275Q 0.87 tolerated(0.58) benign(0.137) TCGA-64-5775-01 14 94505495 94505495 G T OTUB2 Intron 0.80 TCGA-64-5775-01 14 95088785 95088785 A G SERPINA3 Missense_Mutation p.D342G 0.93 deleterious(0.01) possibly_damaging(0.841) TCGA-64-5775-01 15 100332676 100332676 G A AC090825.1 3'Flank 0.19 TCGA-64-5775-01 15 102197239 102197239 C T TARSL2 Missense_Mutation p.V716I 0.52 tolerated(0.08) benign(0.152) TCGA-64-5775-01 15 102197240 102197240 C A TARSL2 Splice_Site p.X716_splice 0.50 TCGA-64-5775-01 15 20488833 20488833 G C CHEK2P2 RNA 0.11 TCGA-64-5775-01 15 20490524 20490524 T - CHEK2P2 RNA 0.13 TCGA-64-5775-01 15 22369185 22369185 G T OR4M2 Missense_Mutation p.G204C 0.22 deleterious(0) probably_damaging(1) TCGA-64-5775-01 15 23812161 23812161 C A MKRN3 Missense_Mutation p.P411Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-64-5775-01 15 33842464 33842464 G T RYR3 Missense_Mutation p.D307Y 0.30 probably_damaging(0.981) TCGA-64-5775-01 15 33991938 33991938 C T RYR3 Missense_Mutation p.R2095C 0.68 probably_damaging(0.996) TCGA-64-5775-01 15 40265983 40265983 G A EIF2AK4 Intron 0.53 TCGA-64-5775-01 15 43572139 43572139 C T TGM7 Silent p.E454E 0.30 TCGA-64-5775-01 15 44630106 44630106 G T CASC4 Splice_Site p.X241_splice 0.39 TCGA-64-5775-01 15 48413249 48413249 C T SLC24A5 Missense_Mutation p.T3I 0.10 tolerated_low_confidence(0.22) benign(0.001) TCGA-64-5775-01 15 50226373 50226373 C A ATP8B4 Nonsense_Mutation p.E432* 0.26 TCGA-64-5775-01 15 50555433 50555433 C A HDC Missense_Mutation p.G68V 0.17 deleterious(0) probably_damaging(1) TCGA-64-5775-01 15 51201079 51201079 G T AP4E1 Missense_Mutation p.R35M 0.69 deleterious(0) possibly_damaging(0.847) TCGA-64-5775-01 15 68119376 68119376 G T SKOR1 Missense_Mutation p.G511C 0.25 deleterious_low_confidence(0) benign(0.01) TCGA-64-5775-01 15 69327796 69327796 G T NOX5 Missense_Mutation p.V320L 0.53 tolerated(0.25) benign(0.037) TCGA-64-5775-01 15 72208825 72208825 T C MYO9A Silent p.L857L 0.46 TCGA-64-5775-01 15 73409019 73409019 G A NEO1 Missense_Mutation p.G90E 0.26 deleterious(0) probably_damaging(1) TCGA-64-5775-01 15 81188358 81188358 G T KIAA1199 Silent p.V456V 0.32 TCGA-64-5775-01 15 84373230 84373230 G T ADAMTSL3 Missense_Mutation p.E53D 0.54 tolerated(0.26) probably_damaging(0.996) TCGA-64-5775-01 15 86236676 86236676 T A AKAP13 Missense_Mutation p.C1824S 0.33 deleterious(0.01) probably_damaging(0.985) TCGA-64-5775-01 15 88679745 88679745 C G NTRK3 Missense_Mutation p.D240H 0.55 tolerated(0.12) possibly_damaging(0.863) TCGA-64-5775-01 15 89867077 89867077 C A POLG Missense_Mutation p.R709L 0.14 tolerated(0.28) benign(0.001) TCGA-64-5775-01 15 91769503 91769503 T C SV2B Missense_Mutation p.Y4H 0.50 tolerated_low_confidence(0.4) possibly_damaging(0.548) TCGA-64-5775-01 15 98509171 98509172 TG - ARRDC4 Frame_Shift_Del p.V142Afs*11 0.33 TCGA-64-5775-01 16 11363161 11363161 C A TNP2 5'UTR 0.30 TCGA-64-5775-01 16 11369761 11369761 T A PRM2 Missense_Mutation p.H102L 0.17 unknown(0) TCGA-64-5775-01 16 14951111 14951111 G T NOMO1 Missense_Mutation p.R334M 0.47 deleterious(0) probably_damaging(0.985) TCGA-64-5775-01 16 21698946 21698947 GC - OTOA Frame_Shift_Del p.E206Gfs*4 0.33 TCGA-64-5775-01 16 2288443 2288443 C A DNASE1L2 3'UTR 0.14 TCGA-64-5775-01 16 27499558 27499558 T A GTF3C1 Missense_Mutation p.R1230S 0.28 deleterious(0.01) benign(0.219) TCGA-64-5775-01 16 31157191 31157191 G A PRSS36 Silent p.P213P 0.49 TCGA-64-5775-01 16 31414948 31414948 C A ITGAD Missense_Mutation p.T229K 0.51 deleterious(0) possibly_damaging(0.703) TCGA-64-5775-01 16 4431769 4431769 C T VASN Silent p.R297R 0.23 TCGA-64-5775-01 16 48145573 48145573 C A ABCC12 Missense_Mutation p.D709Y 0.26 deleterious(0) possibly_damaging(0.615) TCGA-64-5775-01 16 49407822 49407822 C A C16orf78 5'UTR 0.57 TCGA-64-5775-01 16 58582519 58582519 C G CNOT1 Intron 0.21 TCGA-64-5775-01 16 68156481 68156481 G T NFATC3 Missense_Mutation p.G232V 0.20 tolerated(0.37) possibly_damaging(0.659) TCGA-64-5775-01 16 70162760 70162760 A T PDPR Silent p.A145A 0.15 TCGA-64-5775-01 16 70841400 70841400 T A HYDIN 3'UTR 0.52 TCGA-64-5775-01 16 70908242 70908242 G T HYDIN Silent p.I3638I 0.14 TCGA-64-5775-01 16 71512219 71512219 C A ZNF19 Silent p.L62L 0.33 TCGA-64-5775-01 16 74685929 74685929 C A RFWD3 Missense_Mutation p.V204L 0.20 tolerated(0.3) benign(0.002) TCGA-64-5775-01 16 81888159 81888159 A T PLCG2 Missense_Mutation p.T102S 0.56 tolerated(0.84) benign(0.003) TCGA-64-5775-01 16 81925085 81925085 G A PLCG2 Silent p.T292T 0.23 TCGA-64-5775-01 16 84067060 84067060 G T SLC38A8 Missense_Mutation p.L135M 0.48 tolerated(0.22) possibly_damaging(0.824) TCGA-64-5775-01 16 84230345 84230345 T G ADAD2 Missense_Mutation p.L622R 0.13 deleterious(0) possibly_damaging(0.882) TCGA-64-5775-01 16 86601557 86601557 G C FOXC2 Missense_Mutation p.E206Q 0.28 tolerated(0.37) possibly_damaging(0.631) TCGA-64-5775-01 16 90032312 90032312 C T DEF8 Missense_Mutation p.R494W 0.22 deleterious(0) probably_damaging(0.996) TCGA-64-5775-01 17 19861631 19861631 C A AKAP10 Missense_Mutation p.K191N 0.78 tolerated(0.33) benign(0.101) TCGA-64-5775-01 17 33491042 33491042 G T UNC45B Silent p.G336G 0.70 TCGA-64-5775-01 17 37865605 37865605 C T ERBB2 Silent p.N158N 0.39 TCGA-64-5775-01 17 39092632 39092632 G T KRT23 Missense_Mutation p.T75N 0.75 deleterious(0) probably_damaging(0.951) TCGA-64-5775-01 17 40271406 40271406 G A KAT2A Silent p.R310R 0.73 TCGA-64-5775-01 17 41909256 41909256 C G MPP3 Missense_Mutation p.D7H 0.67 tolerated(0.06) possibly_damaging(0.764) TCGA-64-5775-01 17 45893993 45893993 G A OSBPL7 Silent p.T288T 0.81 TCGA-64-5775-01 17 51900573 51900573 G T KIF2B Missense_Mutation p.W60L 0.77 deleterious(0) probably_damaging(0.998) TCGA-64-5775-01 17 53471758 53471758 C A MMD Silent p.V218V 0.79 TCGA-64-5775-01 17 56343529 56343529 T A LPO Missense_Mutation p.L512Q 0.67 deleterious(0.02) probably_damaging(1) TCGA-64-5775-01 17 56358133 56358133 G A MPO 5'UTR 0.86 TCGA-64-5775-01 17 62018356 62018356 C A SCN4A Silent p.G1762G 0.70 TCGA-64-5775-01 17 6943341 6943341 C T SLC16A13 3'UTR 0.89 TCGA-64-5775-01 17 7577100 7577100 T C TP53 Missense_Mutation p.R280G 0.76 deleterious(0) probably_damaging(0.947) TCGA-64-5775-01 17 76198623 76198623 C T AFMID Silent p.V66V 0.19 TCGA-64-5775-01 17 78350335 78350335 A C RNF213 Missense_Mutation p.T4474P 0.05 benign(0.081) TCGA-64-5775-01 17 9613391 9613391 G T USP43 Silent p.R710R 0.69 TCGA-64-5775-01 18 14478730 14478730 G C CXADRP3 RNA 0.33 TCGA-64-5775-01 18 30903460 30903460 G T CCDC178 Silent p.A339A 0.22 TCGA-64-5775-01 18 30903461 30903461 G T CCDC178 Missense_Mutation p.A339D 0.22 tolerated(0.49) possibly_damaging(0.524) TCGA-64-5775-01 18 31324221 31324221 C A ASXL3 Missense_Mutation p.P1470Q 0.38 probably_damaging(1) TCGA-64-5775-01 18 34191968 34191968 G T FHOD3 Silent p.L289L 0.39 TCGA-64-5775-01 18 39537583 39537583 G T PIK3C3 Silent p.L39L 0.35 TCGA-64-5775-01 18 5290892 5290892 C - ZBTB14 Frame_Shift_Del p.A439Qfs*8 0.19 TCGA-64-5775-01 18 56247074 56247074 G T ALPK2 Missense_Mutation p.P312T 0.22 deleterious(0) possibly_damaging(0.878) TCGA-64-5775-01 18 56586014 56586014 G T ZNF532 Silent p.T165T 0.24 TCGA-64-5775-01 18 63530152 63530152 G C CDH7 Missense_Mutation p.L621F 0.33 tolerated(0.09) probably_damaging(0.999) TCGA-64-5775-01 18 67684766 67684766 C A RTTN Missense_Mutation p.G2100C 0.33 deleterious(0) probably_damaging(1) TCGA-64-5775-01 18 6961967 6961967 C A LAMA1 Missense_Mutation p.V2477L 0.15 tolerated(0.13) probably_damaging(0.997) TCGA-64-5775-01 18 74607043 74607043 G T ZNF236 Missense_Mutation p.D496Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-64-5775-01 18 9533746 9533746 G T RALBP1 Missense_Mutation p.E541D 0.78 tolerated(1) benign(0.001) TCGA-64-5775-01 19 10657598 10657598 C T ATG4D Missense_Mutation p.R193C 0.84 tolerated(0.07) benign(0.002) TCGA-64-5775-01 19 18255441 18255441 G A MAST3 Missense_Mutation p.G888D 0.05 tolerated_low_confidence(0.37) benign(0.025) TCGA-64-5775-01 19 22575523 22575523 G T ZNF98 Missense_Mutation p.H172N 0.73 tolerated(0.05) benign(0.405) TCGA-64-5775-01 19 23159167 23159167 G T ZNF728 Silent p.S324S 0.70 TCGA-64-5775-01 19 3551130 3551130 C A MFSD12 Missense_Mutation p.A121S 0.76 benign(0.01) TCGA-64-5775-01 19 3789352 3789352 G T MATK 5'UTR 0.71 TCGA-64-5775-01 19 41386406 41386406 G A CYP2A7 Silent p.I157I 0.50 TCGA-64-5775-01 19 43371807 43371807 A T PSG1 3'UTR 0.67 TCGA-64-5775-01 19 43433838 43433838 A G PSG7 Silent p.N155N 0.81 TCGA-64-5775-01 19 44511178 44511178 C T ZNF230 5'UTR 0.85 TCGA-64-5775-01 19 44934092 44934092 C A ZNF229 Missense_Mutation p.L288F 0.88 tolerated(0.46) benign(0.002) TCGA-64-5775-01 19 49877992 49877992 A G DKKL1 Missense_Mutation p.K146E 0.62 deleterious_low_confidence(0.02) benign(0.097) TCGA-64-5775-01 19 51274608 51274608 G T GPR32 Missense_Mutation p.A251S 0.67 tolerated(0.61) benign(0.012) TCGA-64-5775-01 19 52222568 52222568 G T HAS1 Missense_Mutation p.A198E 0.71 tolerated(1) benign(0.03) TCGA-64-5775-01 19 53473707 53473707 G T ZNF702P RNA 0.93 TCGA-64-5775-01 19 53669454 53669454 C G ZNF665 Missense_Mutation p.D97H 0.78 deleterious(0.04) probably_damaging(0.941) TCGA-64-5775-01 19 54485474 54485474 G C CACNG8 Missense_Mutation p.E217Q 0.94 deleterious(0.02) probably_damaging(0.932) TCGA-64-5775-01 19 54760174 54760174 C A LILRB5 Silent p.L129L 0.81 TCGA-64-5775-01 19 55263202 55263202 A T KIR2DL3 Nonsense_Mutation p.K273* 0.71 TCGA-64-5775-01 19 55671298 55671298 C A DNAAF3 Missense_Mutation p.G445C 0.71 deleterious(0) probably_damaging(0.982) TCGA-64-5775-01 19 57286128 57286128 G A ZIM2 Silent p.G504G 0.74 TCGA-64-5775-01 19 5788169 5788169 G A DUS3L Nonsense_Mutation p.R321* 0.76 TCGA-64-5775-01 19 58084849 58084849 C T ZNF416 Silent p.K141K 0.81 TCGA-64-5775-01 19 58238788 58238788 G C ZNF671 Missense_Mutation p.P37A 0.78 tolerated(0.18) benign(0) TCGA-64-5775-01 19 58867550 58867550 G A ZNF497 Silent p.N484N 0.61 TCGA-64-5775-01 19 8808576 8808576 C T ACTL9 Missense_Mutation p.R159H 0.28 deleterious(0) probably_damaging(0.999) TCGA-64-5775-01 19 9011493 9011493 G T MUC16 Missense_Mutation p.P12914T 0.70 possibly_damaging(0.784) TCGA-64-5775-01 19 9049248 9049248 A T MUC16 Missense_Mutation p.S10795T 0.73 benign(0.001) TCGA-64-5775-01 19 9062525 9062525 G A MUC16 Silent p.T8307T 0.21 TCGA-64-5775-01 1 103440391 103440391 G T COL11A1 Missense_Mutation p.P935T 0.36 unknown(0) TCGA-64-5775-01 1 103491353 103491353 T A COL11A1 Intron 0.33 TCGA-64-5775-01 1 103491782 103491782 G C COL11A1 Missense_Mutation p.A296G 0.30 possibly_damaging(0.771) TCGA-64-5775-01 1 103548452 103548452 G T COL11A1 Nonsense_Mutation p.C61* 0.33 TCGA-64-5775-01 1 107600389 107600389 G C PRMT6 Missense_Mutation p.R351P 0.32 deleterious(0) probably_damaging(1) TCGA-64-5775-01 1 109813107 109813107 G T CELSR2 Missense_Mutation p.W2456C 0.28 deleterious(0) probably_damaging(0.998) TCGA-64-5775-01 1 110717483 110717483 G C SLC6A17 Silent p.S218S 0.32 TCGA-64-5775-01 1 110717484 110717484 G T SLC6A17 Nonsense_Mutation p.E219* 0.33 TCGA-64-5775-01 1 111495357 111495357 T A LRIF1 Missense_Mutation p.K50M 0.31 deleterious(0) benign(0.001) TCGA-64-5775-01 1 116670876 116670876 G A MAB21L3 Silent p.R257R 0.25 TCGA-64-5775-01 1 118477140 118477140 C T WDR3 Silent p.C72C 0.05 TCGA-64-5775-01 1 119962122 119962122 T A HSD3B2 Missense_Mutation p.V75D 0.37 deleterious(0) possibly_damaging(0.629) TCGA-64-5775-01 1 12089915 12089915 A G MIIP Missense_Mutation p.Q270R 0.52 tolerated(1) benign(0.005) TCGA-64-5775-01 1 12248921 12248921 A T TNFRSF1B Silent p.T49T 0.25 TCGA-64-5775-01 1 145075801 145075801 C G PDE4DIP Missense_Mutation p.R21P 0.09 tolerated_low_confidence(0.17) possibly_damaging(0.655) TCGA-64-5775-01 1 151680397 151680397 G T CELF3 Missense_Mutation p.S167R 0.15 deleterious(0.01) benign(0.033) TCGA-64-5775-01 1 152279988 152279988 A T FLG Silent p.G2458G 0.46 TCGA-64-5775-01 1 153177371 153177371 C A LELP1 Nonsense_Mutation p.S63* 0.48 TCGA-64-5775-01 1 156532439 156532439 C A IQGAP3 Missense_Mutation p.D273Y 0.43 deleterious(0) probably_damaging(0.996) TCGA-64-5775-01 1 156883536 156883536 C A PEAR1 Silent p.G899G 0.65 TCGA-64-5775-01 1 158152741 158152741 A T CD1D Silent p.S227S 0.42 TCGA-64-5775-01 1 158301238 158301238 C A CD1B 5'UTR 0.24 TCGA-64-5775-01 1 158325743 158325743 A T CD1E Missense_Mutation p.Q251L 0.37 deleterious(0.04) benign(0.166) TCGA-64-5775-01 1 158615096 158615096 C A SPTA1 Missense_Mutation p.G1359V 0.32 deleterious(0.02) benign(0.05) TCGA-64-5775-01 1 170521423 170521423 A G GORAB Silent p.P335P 0.36 TCGA-64-5775-01 1 172425554 172425554 G T C1orf105 Splice_Site p.X67_splice 0.22 TCGA-64-5775-01 1 172425555 172425555 G T C1orf105 Missense_Mutation p.A67S 0.23 deleterious(0.05) benign(0.005) TCGA-64-5775-01 1 173476059 173476059 A C SLC9C2 Missense_Mutation p.V1054G 0.30 deleterious(0) probably_damaging(0.985) TCGA-64-5775-01 1 17548814 17548814 G T PADI1 Missense_Mutation p.R41M 0.18 deleterious(0.04) possibly_damaging(0.56) TCGA-64-5775-01 1 17548815 17548815 G T PADI1 Missense_Mutation p.R41S 0.20 tolerated(1) benign(0.002) TCGA-64-5775-01 1 179561783 179561783 G T TDRD5 Silent p.L11L 0.37 TCGA-64-5775-01 1 181765960 181765960 C A CACNA1E Missense_Mutation p.P2122H 0.60 deleterious(0) probably_damaging(0.99) TCGA-64-5775-01 1 182027050 182027050 G T ZNF648 Missense_Mutation p.N32K 0.45 deleterious(0.01) benign(0.255) TCGA-64-5775-01 1 193218922 193218922 G T CDC73 Missense_Mutation p.V494L 0.31 deleterious(0.01) possibly_damaging(0.86) TCGA-64-5775-01 1 196887425 196887425 A T CFHR4 Silent p.T541T 0.42 TCGA-64-5775-01 1 197065223 197065223 C A ASPM Missense_Mutation p.W2964C 0.52 tolerated(0.09) possibly_damaging(0.617) TCGA-64-5775-01 1 197128743 197128743 G A ZBTB41 Missense_Mutation p.R826C 0.06 deleterious(0.01) benign(0.288) TCGA-64-5775-01 1 197390204 197390204 C A CRB1 Missense_Mutation p.P416T 0.26 tolerated(0.16) benign(0.259) TCGA-64-5775-01 1 20009803 20009803 C A TMCO4 Missense_Mutation p.Q545H 0.50 deleterious(0.01) benign(0.252) TCGA-64-5775-01 1 20009804 20009804 T A TMCO4 Missense_Mutation p.Q545L 0.50 tolerated(0.06) benign(0.003) TCGA-64-5775-01 1 201973564 201973564 C G RNPEP Missense_Mutation p.I578M 0.27 tolerated(0.13) probably_damaging(0.918) TCGA-64-5775-01 1 206331183 206331183 T G CTSE Nonstop_Mutation p.*397Eext*11 0.23 TCGA-64-5775-01 1 207195647 207195647 C A C1orf116 Missense_Mutation p.G488C 0.23 deleterious(0) probably_damaging(1) TCGA-64-5775-01 1 207741314 207741314 C A CR1 Missense_Mutation p.S1366R 0.29 tolerated(0.34) possibly_damaging(0.695) TCGA-64-5775-01 1 208206713 208206713 C A PLXNA2 Missense_Mutation p.G1669V 0.47 tolerated(0.09) probably_damaging(0.999) TCGA-64-5775-01 1 208390847 208390847 G A PLXNA2 Missense_Mutation p.R141W 0.29 deleterious(0) probably_damaging(0.989) TCGA-64-5775-01 1 209955544 209955544 G A TRAF3IP3 3'UTR 0.47 TCGA-64-5775-01 1 232579372 232579372 C T SIPA1L2 Nonsense_Mutation p.W1138* 0.39 TCGA-64-5775-01 1 23418280 23418280 C A LUZP1 Missense_Mutation p.Q825H 0.40 tolerated(0.1) benign(0.029) TCGA-64-5775-01 1 237670064 237670064 C A RYR2 Missense_Mutation p.H890N 0.56 probably_damaging(0.912) TCGA-64-5775-01 1 237789102 237789102 C A RYR2 Missense_Mutation p.S2055Y 0.27 possibly_damaging(0.615) TCGA-64-5775-01 1 237870278 237870278 G A RYR2 Missense_Mutation p.V3204I 0.27 benign(0.003) TCGA-64-5775-01 1 237948103 237948103 C A RYR2 Missense_Mutation p.T4364N 0.18 benign(0.291) TCGA-64-5775-01 1 247586625 247586625 G T NLRP3 Missense_Mutation p.R126I 0.26 deleterious(0.03) possibly_damaging(0.453) TCGA-64-5775-01 1 247588117 247588117 C A NLRP3 Missense_Mutation p.Q458K 0.21 tolerated(0.59) benign(0.002) TCGA-64-5775-01 1 26310565 26310565 C A PAFAH2 Missense_Mutation p.A142S 0.20 tolerated(1) benign(0.025) TCGA-64-5775-01 1 27949654 27949654 C T FGR Silent p.G76G 0.32 TCGA-64-5775-01 1 32222212 32222212 T A BAI2 Nonsense_Mutation p.K76* 0.33 TCGA-64-5775-01 1 34038154 34038154 G T CSMD2 Missense_Mutation p.L2574M 0.53 tolerated(0.18) probably_damaging(0.974) TCGA-64-5775-01 1 35260672 35260672 C A GJA4 Silent p.S286S 0.29 TCGA-64-5775-01 1 35334650 35334650 C T DLGAP3 Missense_Mutation p.V681M 0.31 deleterious(0.02) probably_damaging(0.924) TCGA-64-5775-01 1 46120390 46120390 C A GPBP1L1 Missense_Mutation p.R101L 0.30 deleterious(0) possibly_damaging(0.827) TCGA-64-5775-01 1 47685773 47685773 C A TAL1 Silent p.G205G 0.26 TCGA-64-5775-01 1 53930518 53930518 C A DMRTB1 Missense_Mutation p.T320N 0.47 deleterious(0.01) benign(0.162) TCGA-64-5775-01 1 60538214 60538214 T A C1orf87 Silent p.P34P 0.10 TCGA-64-5775-01 1 62739527 62739527 C A KANK4 Missense_Mutation p.D417Y 0.08 deleterious(0) possibly_damaging(0.642) TCGA-64-5775-01 1 6305549 6305549 C A HES3 Silent p.P181P 0.55 TCGA-64-5775-01 1 66102113 66102113 G T LEPR Missense_Mutation p.E971D 0.11 tolerated(0.9) benign(0.001) TCGA-64-5775-01 1 66102442 66102442 G T LEPR Missense_Mutation p.G1081V 0.84 deleterious(0) probably_damaging(0.98) TCGA-64-5775-01 1 6641317 6641317 C A ZBTB48 Silent p.P216P 0.08 TCGA-64-5775-01 1 67242971 67242971 G T TCTEX1D1 Missense_Mutation p.R125L 0.70 deleterious(0) probably_damaging(0.961) TCGA-64-5775-01 1 75055605 75055605 G A C1orf173 Missense_Mutation p.P629L 0.08 tolerated(0.08) benign(0.081) TCGA-64-5775-01 1 75055645 75055645 T A C1orf173 Nonsense_Mutation p.R616* 0.78 TCGA-64-5775-01 1 77806104 77806104 C A AK5 Missense_Mutation p.Q248K 0.82 tolerated(0.2) possibly_damaging(0.489) TCGA-64-5775-01 1 8384429 8384429 C A SLC45A1 Missense_Mutation p.L14I 0.38 deleterious_low_confidence(0.02) benign(0.024) TCGA-64-5775-01 1 898278 898278 G A KLHL17 Silent p.G341G 0.29 TCGA-64-5775-01 1 91841140 91841141 TG - HFM1 Frame_Shift_Del p.N514Lfs*12 0.22 TCGA-64-5775-01 1 981168 981168 G A AGRN Silent p.G864G 0.39 TCGA-64-5775-01 1 986125 986125 C A AGRN Missense_Mutation p.L1721M 0.30 deleterious(0.04) possibly_damaging(0.709) TCGA-64-5775-01 20 18143374 18143374 C T CSRP2BP Missense_Mutation p.P486S 0.24 tolerated(0.25) benign(0.04) TCGA-64-5775-01 20 30784196 30784196 G A PLAGL2 3'UTR 0.21 TCGA-64-5775-01 20 31388040 31388040 G T DNMT3B Missense_Mutation p.G614V 0.40 deleterious(0) probably_damaging(1) TCGA-64-5775-01 20 32878141 32878141 C T AHCY Silent p.P323P 0.39 TCGA-64-5775-01 20 34596256 34596256 C A CNBD2 Silent p.I336I 0.28 TCGA-64-5775-01 20 41101018 41101018 G T PTPRT Missense_Mutation p.H446Q 0.11 tolerated(0.55) possibly_damaging(0.55) TCGA-64-5775-01 20 43552898 43552898 G T PABPC1L Splice_Site p.X324_splice 0.55 TCGA-64-5775-01 20 47607618 47607618 C T ARFGEF2 Silent p.S952S 0.21 TCGA-64-5775-01 20 50310572 50310572 C A ATP9A Missense_Mutation p.C206F 0.73 tolerated(0.58) benign(0.006) TCGA-64-5775-01 20 55758795 55758795 C T BMP7 Missense_Mutation p.R314Q 0.25 tolerated(0.07) benign(0.036) TCGA-64-5775-01 20 55904856 55904856 C G SPO11 5'UTR 0.82 TCGA-64-5775-01 20 56094399 56094399 C T CTCFL Missense_Mutation p.M263I 0.18 tolerated(0.21) benign(0.005) TCGA-64-5775-01 20 56139537 56139537 G T PCK1 Splice_Site p.X396_splice 0.26 TCGA-64-5775-01 20 61834033 61834033 C A YTHDF1 Missense_Mutation p.R420L 0.47 deleterious(0) probably_damaging(0.991) TCGA-64-5775-01 20 62850370 62850370 A T MYT1 Silent p.P651P 0.34 TCGA-64-5775-01 20 62853402 62853402 T G MYT1 Splice_Site p.X799_splice 0.13 TCGA-64-5775-01 21 10920104 10920104 C A TPTE Nonsense_Mutation p.G384* 0.18 TCGA-64-5775-01 21 19756051 19756051 C A TMPRSS15 Missense_Mutation p.W130L 0.50 tolerated(0.58) benign(0.021) TCGA-64-5775-01 21 46102028 46102028 G A KRTAP12-1 Missense_Mutation p.T4I 0.62 deleterious(0) possibly_damaging(0.803) TCGA-64-5775-01 22 22749788 22749788 G T IGLV7-43 Missense_Mutation p.E104D 0.26 deleterious(0.03) possibly_damaging(0.804) TCGA-64-5775-01 22 22843330 22843330 G - ZNF280B Frame_Shift_Del p.Q132Kfs*14 0.24 TCGA-64-5775-01 22 23090224 23090224 C T IGLV3-16 Nonsense_Mutation p.Q55* 0.18 TCGA-64-5775-01 22 25123945 25123945 C T PIWIL3 Missense_Mutation p.V670I 0.42 deleterious(0) probably_damaging(0.984) TCGA-64-5775-01 22 29121263 29121263 T C CHEK2 Missense_Mutation p.T181A 0.29 tolerated(0.32) benign(0.172) TCGA-64-5775-01 22 29664192 29664192 C A EWSR1 5'Flank 0.50 TCGA-64-5775-01 22 37966684 37966684 A T LGALS2 Missense_Mutation p.F50I 0.47 deleterious(0.01) possibly_damaging(0.875) TCGA-64-5775-01 22 40055719 40055719 C A CACNA1I Missense_Mutation p.D822E 0.59 deleterious(0.01) possibly_damaging(0.739) TCGA-64-5775-01 22 44107437 44107437 C A EFCAB6 Missense_Mutation p.V317L 0.62 deleterious(0.01) possibly_damaging(0.621) TCGA-64-5775-01 22 50192297 50192297 G A BRD1 Missense_Mutation p.T565I 0.31 deleterious(0.01) benign(0.012) TCGA-64-5775-01 2 105858804 105858804 G - GPR45 Frame_Shift_Del p.S166Rfs*94 0.67 TCGA-64-5775-01 2 113300233 113300233 C T POLR1B Silent p.L54L 0.50 TCGA-64-5775-01 2 119726804 119726804 C A MARCO Missense_Mutation p.L56I 0.25 deleterious(0.01) benign(0.126) TCGA-64-5775-01 2 130832725 130832725 C A POTEF Missense_Mutation p.G774C 0.37 deleterious_low_confidence(0) probably_damaging(1) TCGA-64-5775-01 2 132241764 132241765 CC A MZT2A Frame_Shift_Del p.G116Wfs*? 0.10 TCGA-64-5775-01 2 132276832 132276833 GG T AC093838.4 RNA 0.24 TCGA-64-5775-01 2 137988681 137988681 C A THSD7B Silent p.P597P 0.30 TCGA-64-5775-01 2 138376014 138376014 G C THSD7B Missense_Mutation p.R1209S 0.44 deleterious(0) unknown(0) TCGA-64-5775-01 2 140995809 140995809 C A LRP1B Missense_Mutation p.G4491V 0.50 probably_damaging(0.953) TCGA-64-5775-01 2 141458109 141458109 C A LRP1B Missense_Mutation p.C2170F 0.27 benign(0.308) TCGA-64-5775-01 2 144966344 144966344 C A GTDC1 Missense_Mutation p.S2I 0.27 deleterious(0) possibly_damaging(0.845) TCGA-64-5775-01 2 150069541 150069541 A T LYPD6B Missense_Mutation p.S122C 0.49 probably_damaging(0.927) TCGA-64-5775-01 2 155252566 155252566 G T GALNT13 Missense_Mutation p.C407F 0.29 deleterious(0) probably_damaging(0.996) TCGA-64-5775-01 2 158978086 158978086 C A UPP2 Missense_Mutation p.P264Q 0.18 tolerated(0.17) benign(0.24) TCGA-64-5775-01 2 160697335 160697335 G T LY75-CD302 Missense_Mutation p.L1138M 0.45 deleterious(0.02) probably_damaging(0.986) TCGA-64-5775-01 2 162274207 162274207 G C TBR1 Missense_Mutation p.S238T 0.44 deleterious(0.03) probably_damaging(0.95) TCGA-64-5775-01 2 1667392 1667392 T A PXDN Missense_Mutation p.T518S 0.54 tolerated(0.16) benign(0.013) TCGA-64-5775-01 2 179497479 179497480 TT - TTN Frame_Shift_Del p.K14418Sfs*6 0.27 TCGA-64-5775-01 2 183584886 183584886 T C DNAJC10 Silent p.R119R 0.29 TCGA-64-5775-01 2 198950857 198950857 T C PLCL1 Silent p.Y872Y 0.66 TCGA-64-5775-01 2 201473757 201473757 G T AOX1 Missense_Mutation p.A320S 0.63 tolerated(0.7) benign(0.021) TCGA-64-5775-01 2 202352544 202352544 A T ALS2CR11 Missense_Mutation p.L1752I 0.26 tolerated(0.06) benign(0.055) TCGA-64-5775-01 2 209271755 209271755 C G PTH2R 5'UTR 0.30 TCGA-64-5775-01 2 211465353 211465353 A T CPS1 Missense_Mutation p.M548L 0.22 tolerated(0.06) benign(0.009) TCGA-64-5775-01 2 21229598 21229598 A G APOB Missense_Mutation p.L3381S 0.49 probably_damaging(0.997) TCGA-64-5775-01 2 216213880 216213880 G T ATIC Nonsense_Mutation p.E523* 0.46 TCGA-64-5775-01 2 219754782 219754782 G T WNT10A Silent p.L151L 0.13 TCGA-64-5775-01 2 220098104 220098104 A T ANKZF1 Silent p.S256S 0.31 TCGA-64-5775-01 2 220326615 220326615 T C SPEG Missense_Mutation p.S818P 0.21 possibly_damaging(0.822) TCGA-64-5775-01 2 222298988 222298988 C A EPHA4 Missense_Mutation p.W790C 0.23 deleterious(0) probably_damaging(0.988) TCGA-64-5775-01 2 223917913 223917913 G T KCNE4 Missense_Mutation p.G122V 0.20 deleterious(0.05) possibly_damaging(0.826) TCGA-64-5775-01 2 225761065 225761065 A G DOCK10 Silent p.H121H 0.50 TCGA-64-5775-01 2 231090583 231090583 G T SP140 Silent p.G8G 0.62 TCGA-64-5775-01 2 236649676 236649677 - C AGAP1 Frame_Shift_Ins p.E130Gfs*20 0.33 TCGA-64-5775-01 2 238280799 238280799 G C COL6A3 Missense_Mutation p.N1287K 0.53 probably_damaging(0.996) TCGA-64-5775-01 2 241712631 241712631 G T KIF1A Silent p.I360I 0.24 TCGA-64-5775-01 2 242707130 242707130 G T D2HGDH Missense_Mutation p.G438C 0.22 deleterious(0.04) probably_damaging(0.928) TCGA-64-5775-01 2 28521328 28521328 G T BRE Missense_Mutation p.W353L 0.47 deleterious(0) probably_damaging(0.998) TCGA-64-5775-01 2 28521329 28521329 G T BRE Missense_Mutation p.W353C 0.47 deleterious(0) probably_damaging(0.999) TCGA-64-5775-01 2 32836633 32836633 A G BIRC6 Missense_Mutation p.H4793R 0.32 probably_damaging(0.951) TCGA-64-5775-01 2 44036927 44036927 A T DYNC2LI1 3'UTR 0.78 TCGA-64-5775-01 2 44553863 44553863 C A PREPL Silent p.A578A 0.25 TCGA-64-5775-01 2 47136246 47136246 G A MCFD2 Missense_Mutation p.P22L 0.26 tolerated_low_confidence(0.75) benign(0.002) TCGA-64-5775-01 2 48688331 48688331 C G PPP1R21 Silent p.S218S 0.35 TCGA-64-5775-01 2 48898788 48898788 C T STON1-GTF2A1L Missense_Mutation p.T1137M 0.39 deleterious(0.02) benign(0.105) TCGA-64-5775-01 2 68962337 68962337 C T ARHGAP25 Silent p.S2S 0.15 TCGA-64-5775-01 2 69577211 69577211 T - GFPT1 Frame_Shift_Del p.S282Vfs*4 0.54 TCGA-64-5775-01 2 71046978 71046978 C A CLEC4F Missense_Mutation p.R36M 0.66 deleterious(0) probably_damaging(0.959) TCGA-64-5775-01 2 73827957 73827957 G T ALMS1 Missense_Mutation p.G3940C 0.26 possibly_damaging(0.744) TCGA-64-5775-01 2 74166144 74166145 - A DGUOK Frame_Shift_Ins p.A86Sfs*43 0.24 TCGA-64-5775-01 2 74652753 74652753 T C WDR54 Silent p.F310F 0.31 TCGA-64-5775-01 2 79348687 79348687 G T REG1A Splice_Site p.X22_splice 0.24 TCGA-64-5775-01 2 85628374 85628374 C T CAPG Missense_Mutation p.G144R 0.27 deleterious(0) probably_damaging(0.999) TCGA-64-5775-01 2 89100646 89100646 A - ANKRD36BP2 RNA 0.32 TCGA-64-5775-01 2 95481152 95481152 A G ANKRD20A8P RNA 0.56 TCGA-64-5775-01 3 101370100 101370100 T A ZBTB11 Missense_Mutation p.L1024F 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-64-5775-01 3 123456294 123456294 C A MYLK Nonsense_Mutation p.G229* 0.25 TCGA-64-5775-01 3 131253972 131253972 A G CPNE4 3'UTR 0.63 TCGA-64-5775-01 3 137484280 137484280 C A SOX14 Nonsense_Mutation p.Y218* 0.44 TCGA-64-5775-01 3 137822452 137822452 T A DZIP1L Missense_Mutation p.Q121L 0.43 deleterious(0) probably_damaging(0.999) TCGA-64-5775-01 3 147108946 147108946 G T ZIC4 Missense_Mutation p.T309N 0.34 deleterious(0.01) probably_damaging(0.938) TCGA-64-5775-01 3 147114004 147114004 G C ZIC4 Missense_Mutation p.A158G 0.33 tolerated(0.12) benign(0.002) TCGA-64-5775-01 3 157820574 157820574 C A SHOX2 Nonsense_Mutation p.E174* 0.49 TCGA-64-5775-01 3 164907292 164907292 G T SLITRK3 Missense_Mutation p.R443S 0.40 deleterious(0) possibly_damaging(0.844) TCGA-64-5775-01 3 167159885 167159885 T A SERPINI2 3'UTR 0.43 TCGA-64-5775-01 3 183888495 183888495 C T DVL3 Silent p.F701F 0.63 TCGA-64-5775-01 3 186333533 186333533 G T AHSG Silent p.V91V 0.50 TCGA-64-5775-01 3 186395105 186395105 C A HRG Silent p.A337A 0.50 TCGA-64-5775-01 3 192516397 192516397 G T MB21D2 Silent p.V418V 0.19 TCGA-64-5775-01 3 192988531 192988531 G T HRASLS 3'UTR 0.30 TCGA-64-5775-01 3 194991426 194991426 G T XXYLT1 Missense_Mutation p.A121E 0.30 tolerated(0.18) possibly_damaging(0.735) TCGA-64-5775-01 3 35763114 35763114 C T ARPP21 Missense_Mutation p.S304L 0.20 tolerated(0.35) benign(0.069) TCGA-64-5775-01 3 38592373 38592374 GG T SCN5A Frame_Shift_Del p.P1830Qfs*4 0.26 TCGA-64-5775-01 3 38739735 38739735 G T SCN10A Missense_Mutation p.T1659K 0.43 deleterious(0) probably_damaging(1) TCGA-64-5775-01 3 41504603 41504603 G C ULK4 Missense_Mutation p.S1123C 0.32 deleterious(0) possibly_damaging(0.841) TCGA-64-5775-01 3 46399269 46399269 T A CCR2 Missense_Mutation p.L84Q 0.39 deleterious(0) probably_damaging(1) TCGA-64-5775-01 3 47163563 47163563 T A SETD2 Missense_Mutation p.S855C 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.497) TCGA-64-5775-01 3 47460980 47460980 G T SCAP Nonsense_Mutation p.S593* 0.36 TCGA-64-5775-01 3 47703910 47703910 G A SMARCC1 Missense_Mutation p.S691L 0.41 deleterious(0) possibly_damaging(0.573) TCGA-64-5775-01 3 49896879 49896879 G T CAMKV Missense_Mutation p.P460T 0.38 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-64-5775-01 3 50679165 50679165 G T MAPKAPK3 Missense_Mutation p.R129S 0.37 deleterious(0) possibly_damaging(0.764) TCGA-64-5775-01 3 54596898 54596898 G T CACNA2D3 Missense_Mutation p.D206Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-64-5775-01 3 56779265 56779265 C T ARHGEF3 Missense_Mutation p.D312N 0.46 deleterious(0.04) possibly_damaging(0.729) TCGA-64-5775-01 3 58138445 58138445 C A FLNB Intron 0.50 TCGA-64-5775-01 3 73433556 73433556 G T PDZRN3 Missense_Mutation p.L721M 0.34 tolerated(0.07) probably_damaging(0.985) TCGA-64-5775-01 3 78766425 78766425 C A ROBO1 Missense_Mutation p.R306I 0.35 deleterious(0) probably_damaging(0.998) TCGA-64-5775-01 3 9807579 9807579 C T OGG1 Silent p.I345I 0.39 TCGA-64-5775-01 4 100268269 100268269 C A ADH1C Missense_Mutation p.E51D 0.23 benign(0) TCGA-64-5775-01 4 103498066 103498067 - A NFKB1 Frame_Shift_Ins p.V150Sfs*3 0.22 TCGA-64-5775-01 4 113541332 113541332 A T C4orf21 Missense_Mutation p.D59E 0.23 deleterious(0.01) possibly_damaging(0.84) TCGA-64-5775-01 4 119979067 119979067 G T SYNPO2 Missense_Mutation p.R1255M 0.33 deleterious(0) probably_damaging(0.989) TCGA-64-5775-01 4 13601770 13601770 C A BOD1L1 Missense_Mutation p.G2252W 0.45 probably_damaging(1) TCGA-64-5775-01 4 166254679 166254679 G C MSMO1 Missense_Mutation p.G53R 0.26 deleterious(0.02) probably_damaging(0.974) TCGA-64-5775-01 4 187179225 187179225 G T KLKB1 Missense_Mutation p.L592F 0.50 deleterious(0) probably_damaging(1) TCGA-64-5775-01 4 187509957 187509957 T G FAT1 Missense_Mutation p.Y4519S 0.21 benign(0.06) TCGA-64-5775-01 4 1989724 1989724 G A NELFA Silent p.T196T 0.21 TCGA-64-5775-01 4 26661218 26661218 G T TBC1D19 Splice_Site p.X161_splice 0.11 TCGA-64-5775-01 4 37962455 37962455 C G PTTG2 Missense_Mutation p.R134G 0.25 deleterious(0) benign(0.066) TCGA-64-5775-01 4 47405585 47405585 C A GABRB1 Missense_Mutation p.P231Q 0.53 tolerated(0.46) possibly_damaging(0.462) TCGA-64-5775-01 4 55976632 55976632 A G KDR Missense_Mutation p.V398A 0.54 deleterious(0) possibly_damaging(0.5) TCGA-64-5775-01 4 65147209 65147209 G C TECRL Missense_Mutation p.P301A 0.21 deleterious(0) probably_damaging(1) TCGA-64-5775-01 4 680325 680325 G A MFSD7 Missense_Mutation p.A97V 0.38 tolerated(0.52) benign(0.004) TCGA-64-5775-01 4 68928493 68928493 G A TMPRSS11F Intron 0.22 TCGA-64-5775-01 4 69340476 69340476 C A TMPRSS11E Missense_Mutation p.H176N 0.22 tolerated(0.81) benign(0.001) TCGA-64-5775-01 4 69682288 69682288 G C UGT2B10 Missense_Mutation p.G184A 0.50 tolerated(0.12) benign(0.4) TCGA-64-5775-01 4 70346228 70346228 G T UGT2B4 3'UTR 0.64 TCGA-64-5775-01 4 70823408 70823408 G A CSN2 Missense_Mutation p.P87S 0.21 tolerated(0.15) possibly_damaging(0.857) TCGA-64-5775-01 4 71232763 71232763 C G SMR3A 3'UTR 0.56 TCGA-64-5775-01 4 71701992 71701992 G A GRSF1 Missense_Mutation p.P133S 0.14 tolerated(0.18) benign(0.002) TCGA-64-5775-01 4 77020177 77020177 G A ART3 Intron 0.58 TCGA-64-5775-01 4 79800082 79800082 A - BMP2K Intron 0.22 TCGA-64-5775-01 4 9557832 9557832 C A MIR548I2 RNA 0.17 TCGA-64-5775-01 5 100152246 100152246 C A ST8SIA4 Intron 0.42 TCGA-64-5775-01 5 108203468 108203468 G T FER Missense_Mutation p.G161V 0.35 deleterious(0.02) possibly_damaging(0.813) TCGA-64-5775-01 5 112384759 112384759 T A MCC Intron 0.44 TCGA-64-5775-01 5 115361800 115361800 A G AQPEP Silent p.L986L 0.49 TCGA-64-5775-01 5 11732245 11732245 T C CTNND2 Intron 0.22 TCGA-64-5775-01 5 1208962 1208962 G T SLC6A19 Missense_Mutation p.G102C 0.26 deleterious(0) probably_damaging(1) TCGA-64-5775-01 5 140175792 140175792 C A PCDHA2 Missense_Mutation p.R415S 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.838) TCGA-64-5775-01 5 140263227 140263227 C A PCDHA13 Silent p.P458P 0.48 TCGA-64-5775-01 5 140475761 140475761 C A PCDHB2 Missense_Mutation p.R463S 0.32 deleterious_low_confidence(0.01) benign(0.069) TCGA-64-5775-01 5 140554470 140554470 C A PCDHB7 Missense_Mutation p.T685N 0.28 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-64-5775-01 5 140572519 140572519 G C PCDHB10 Missense_Mutation p.V132L 0.36 tolerated_low_confidence(0.15) benign(0.003) TCGA-64-5775-01 5 140604924 140604924 G T PCDHB14 Missense_Mutation p.G616V 0.24 deleterious_low_confidence(0.04) benign(0.345) TCGA-64-5775-01 5 140604970 140604970 C A PCDHB14 Missense_Mutation p.S631R 0.30 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-64-5775-01 5 140627409 140627409 C A PCDHB15 Missense_Mutation p.L755M 0.41 deleterious_low_confidence(0.02) possibly_damaging(0.628) TCGA-64-5775-01 5 140750841 140750841 C A PCDHGB3 Missense_Mutation p.L294M 0.42 deleterious(0) probably_damaging(0.988) TCGA-64-5775-01 5 140752016 140752016 G A PCDHGB3 Silent p.Q685Q 0.42 TCGA-64-5775-01 5 140763012 140763012 G A PCDHGA7 Silent p.V182V 0.27 TCGA-64-5775-01 5 141248253 141248253 T A PCDH1 Missense_Mutation p.S262C 0.35 deleterious(0) probably_damaging(0.978) TCGA-64-5775-01 5 145643117 145643117 C T RBM27 Missense_Mutation p.L752F 0.37 deleterious(0) probably_damaging(0.998) TCGA-64-5775-01 5 14712990 14712990 C T ANKH Missense_Mutation p.R453Q 0.33 tolerated(0.05) possibly_damaging(0.715) TCGA-64-5775-01 5 150657056 150657056 G A SLC36A3 Silent p.I478I 0.39 TCGA-64-5775-01 5 156590160 156590160 C A FAM71B Missense_Mutation p.L372F 0.34 tolerated(0.25) benign(0.291) TCGA-64-5775-01 5 156915298 156915298 G T ADAM19 Missense_Mutation p.P842H 0.28 deleterious(0.01) probably_damaging(1) TCGA-64-5775-01 5 16177991 16177991 C T MARCH11 Splice_Site p.X180_splice 0.25 TCGA-64-5775-01 5 176297470 176297470 G A UNC5A Missense_Mutation p.G274E 0.22 deleterious(0.01) benign(0.085) TCGA-64-5775-01 5 180662378 180662381 GAGA - TRIM41 3'UTR 0.32 TCGA-64-5775-01 5 205950 205950 C A CCDC127 Missense_Mutation p.R82L 0.55 deleterious(0.02) probably_damaging(0.918) TCGA-64-5775-01 5 23509160 23509160 C T PRDM9 Silent p.S6S 0.28 TCGA-64-5775-01 5 24487754 24487754 C A CDH10 3'UTR 0.24 TCGA-64-5775-01 5 33535096 33535096 C A ADAMTS12 Missense_Mutation p.C1483F 0.22 deleterious(0) probably_damaging(0.998) TCGA-64-5775-01 5 33535098 33535098 C A ADAMTS12 Splice_Site p.X1483_splice 0.23 TCGA-64-5775-01 5 33947230 33947230 T A SLC45A2 Intron 0.47 TCGA-64-5775-01 5 34803879 34803879 C T RAI14 Nonsense_Mutation p.Q110* 0.39 TCGA-64-5775-01 5 38963016 38963016 G A RICTOR Nonsense_Mutation p.Q510* 0.32 TCGA-64-5775-01 5 40853331 40853331 A G CARD6 Missense_Mutation p.M633V 0.46 tolerated(0.1) benign(0.141) TCGA-64-5775-01 5 63256879 63256879 C T HTR1A Missense_Mutation p.R223H 0.37 deleterious(0.03) probably_damaging(0.998) TCGA-64-5775-01 5 68491617 68491617 A T CENPH Missense_Mutation p.R105W 0.32 deleterious(0) probably_damaging(0.994) TCGA-64-5775-01 5 79032837 79032837 C T CMYA5 Missense_Mutation p.S2750L 0.11 unknown(0) TCGA-64-5775-01 5 82937482 82937482 C A HAPLN1 Nonsense_Mutation p.G300* 0.37 TCGA-64-5775-01 6 100368793 100368793 C T MCHR2 3'UTR 0.44 TCGA-64-5775-01 6 101214441 101214441 C A ASCC3 Missense_Mutation p.Q579H 0.47 tolerated(0.08) benign(0.074) TCGA-64-5775-01 6 102372516 102372516 C A GRIK2 Missense_Mutation p.P597T 0.35 tolerated(0.05) probably_damaging(1) TCGA-64-5775-01 6 102372517 102372517 C A GRIK2 Missense_Mutation p.P597H 0.35 deleterious(0) probably_damaging(1) TCGA-64-5775-01 6 10995395 10995395 C A ELOVL2 Missense_Mutation p.W117L 0.43 deleterious(0) probably_damaging(1) TCGA-64-5775-01 6 112025246 112025246 T A FYN Missense_Mutation p.N168I 0.62 deleterious(0.01) probably_damaging(1) TCGA-64-5775-01 6 150322629 150322629 C A RAET1K RNA 0.67 TCGA-64-5775-01 6 160998325 160998325 G T LPA Missense_Mutation p.P1492T 0.65 deleterious_low_confidence(0) benign(0.039) TCGA-64-5775-01 6 161969941 161969941 G T PARK2 Missense_Mutation p.P343Q 0.72 deleterious(0) probably_damaging(0.999) TCGA-64-5775-01 6 24205410 24205410 C T DCDC2 Intron 0.60 TCGA-64-5775-01 6 25813179 25813179 A C SLC17A1 Silent p.L259L 0.60 TCGA-64-5775-01 6 26157085 26157085 A G HIST1H1E Missense_Mutation p.K156R 0.45 tolerated(0.41) unknown(0) TCGA-64-5775-01 6 26158556 26158556 C A HIST1H2BD Silent p.T53T 0.54 TCGA-64-5775-01 6 29394980 29394980 C A OR11A1 Missense_Mutation p.V147F 0.27 tolerated(0.06) benign(0.014) TCGA-64-5775-01 6 31599147 31599147 C T PRRC2A Silent p.G899G 0.36 TCGA-64-5775-01 6 32014146 32014146 A T TNXB 5'Flank 0.50 TCGA-64-5775-01 6 34512074 34512074 C A SPDEF Missense_Mutation p.Q53H 0.46 tolerated_low_confidence(0.05) benign(0.006) TCGA-64-5775-01 6 36724072 36724072 C A CPNE5 Missense_Mutation p.V287L 0.25 tolerated(0.18) benign(0.013) TCGA-64-5775-01 6 36724073 36724073 C A CPNE5 Silent p.V286V 0.25 TCGA-64-5775-01 6 40399866 40399866 C A LRFN2 Silent p.L329L 0.47 TCGA-64-5775-01 6 49754088 49754089 GG T PGK2 Frame_Shift_Del p.A271Efs*8 0.18 TCGA-64-5775-01 6 52343958 52343958 G T EFHC1 Missense_Mutation p.G468C 0.20 deleterious(0.02) probably_damaging(0.95) TCGA-64-5775-01 6 55119937 55119937 G T HCRTR2 Missense_Mutation p.V136L 0.51 deleterious(0.01) possibly_damaging(0.642) TCGA-64-5775-01 6 57012581 57012581 A G ZNF451 Silent p.V566V 0.56 TCGA-64-5775-01 6 57398234 57398234 C A PRIM2 Missense_Mutation p.L313M 0.16 deleterious(0) probably_damaging(0.996) TCGA-64-5775-01 6 6318847 6318847 G A F13A1 Silent p.P17P 0.21 TCGA-64-5775-01 6 70049223 70049223 A T BAI3 Splice_Site p.X1096_splice 0.42 TCGA-64-5775-01 6 71195938 71195938 A G FAM135A Intron 0.21 TCGA-64-5775-01 6 87726279 87726279 C A HTR1E 3'UTR 0.67 TCGA-64-5775-01 7 100225567 100225567 G T TFR2 Missense_Mutation p.P523H 0.49 deleterious(0) probably_damaging(0.999) TCGA-64-5775-01 7 100815324 100815324 C A NAT16 3'UTR 0.58 TCGA-64-5775-01 7 103234901 103234901 G T RELN Missense_Mutation p.P1193H 0.21 deleterious(0.01) possibly_damaging(0.548) TCGA-64-5775-01 7 103234902 103234902 G T RELN Missense_Mutation p.P1193T 0.22 tolerated(0.19) benign(0.089) TCGA-64-5775-01 7 103292158 103292158 A T RELN Silent p.A614A 0.16 TCGA-64-5775-01 7 103292171 103292171 G C RELN Missense_Mutation p.P610R 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-64-5775-01 7 103322703 103322703 G T RELN Missense_Mutation p.S383R 0.23 tolerated(0.2) probably_damaging(0.986) TCGA-64-5775-01 7 103838232 103838232 C A ORC5 Nonsense_Mutation p.E128* 0.55 TCGA-64-5775-01 7 107696229 107696229 A G LAMB4 Silent p.A1201A 0.23 TCGA-64-5775-01 7 108205269 108205269 T A THAP5 Missense_Mutation p.N185I 0.29 tolerated(0.49) benign(0.03) TCGA-64-5775-01 7 116166561 116166561 G T CAV1 Intron 0.47 TCGA-64-5775-01 7 117432001 117432001 G T CTTNBP2 Missense_Mutation p.P417T 0.48 tolerated(0.15) benign(0.002) TCGA-64-5775-01 7 124404849 124404849 T A GPR37 Missense_Mutation p.N61I 0.57 deleterious_low_confidence(0.04) benign(0.001) TCGA-64-5775-01 7 131815199 131815199 G A PLXNA4 3'UTR 0.60 TCGA-64-5775-01 7 133881855 133881855 G T LRGUK Nonsense_Mutation p.E515* 0.20 TCGA-64-5775-01 7 134644834 134644834 C - CALD1 Frame_Shift_Del p.T726Lfs*13 0.43 TCGA-64-5775-01 7 136912613 136912613 C T PTN 3'UTR 0.42 TCGA-64-5775-01 7 137263069 137263069 C A DGKI Missense_Mutation p.A549S 0.13 deleterious(0) probably_damaging(0.978) TCGA-64-5775-01 7 138764850 138764850 G - ZC3HAV1 Frame_Shift_Del p.S280Afs*52 0.27 TCGA-64-5775-01 7 141619191 141619191 T C OR9A4 Silent p.N172N 0.30 TCGA-64-5775-01 7 142032319 142032319 G T TRBV7-1 Missense_Mutation p.G47C 0.40 deleterious(0) probably_damaging(0.996) TCGA-64-5775-01 7 143054044 143054044 A G FAM131B Missense_Mutation p.S228P 0.13 tolerated(0.09) probably_damaging(0.999) TCGA-64-5775-01 7 143057165 143057165 G T FAM131B Missense_Mutation p.H36N 0.35 deleterious_low_confidence(0.02) benign(0.073) TCGA-64-5775-01 7 148963787 148963787 G T ZNF783 Missense_Mutation p.R129L 0.22 deleterious(0) probably_damaging(0.987) TCGA-64-5775-01 7 150839674 150839674 G C AGAP3 Missense_Mutation p.W742C 0.45 deleterious(0) probably_damaging(1) TCGA-64-5775-01 7 2108973 2108973 G A MAD1L1 Silent p.S358S 0.45 TCGA-64-5775-01 7 21730382 21730382 G C DNAH11 Splice_Site p.X1982_splice 0.25 TCGA-64-5775-01 7 2696151 2696151 C T TTYH3 Silent p.H411H 0.17 TCGA-64-5775-01 7 27185361 27185361 G C HOXA6 Silent p.R206R 0.25 TCGA-64-5775-01 7 27238027 27238027 A C HOXA13 Nonsense_Mutation p.Y319* 0.26 TCGA-64-5775-01 7 44148746 44148746 C T AEBP1 Silent p.T353T 0.36 TCGA-64-5775-01 7 47842854 47842854 C T PKD1L1 Missense_Mutation p.C2639Y 0.18 tolerated(0.15) benign(0.156) TCGA-64-5775-01 7 50070781 50070781 G T ZPBP Missense_Mutation p.L205I 0.16 deleterious(0.03) possibly_damaging(0.467) TCGA-64-5775-01 7 50605628 50605628 A C DDC Missense_Mutation p.L122R 0.46 deleterious(0) probably_damaging(1) TCGA-64-5775-01 7 51287625 51287625 G A COBL Missense_Mutation p.R20C 0.44 deleterious(0) probably_damaging(0.993) TCGA-64-5775-01 7 57509920 57509920 C A ZNF716 5'UTR 0.64 TCGA-64-5775-01 7 57522863 57522863 C A ZNF716 Missense_Mutation p.A84D 0.24 tolerated(0.25) benign(0.408) TCGA-64-5775-01 7 72849355 72849355 C G FZD9 Missense_Mutation p.L340V 0.46 deleterious(0) probably_damaging(0.994) TCGA-64-5775-01 7 8062173 8062173 T A GLCCI1 Missense_Mutation p.W224R 0.62 deleterious(0) probably_damaging(0.991) TCGA-64-5775-01 7 8062174 8062174 G T GLCCI1 Missense_Mutation p.W224L 0.64 deleterious(0.03) probably_damaging(0.969) TCGA-64-5775-01 7 86537030 86537030 C A KIAA1324L Missense_Mutation p.R838S 0.46 tolerated(0.06) possibly_damaging(0.721) TCGA-64-5775-01 7 86568131 86568131 T C KIAA1324L Silent p.Q331Q 0.26 TCGA-64-5775-01 7 87530130 87530130 G A DBF4 Silent p.L287L 0.26 TCGA-64-5775-01 7 87537065 87537065 A G DBF4 Missense_Mutation p.S538G 0.28 tolerated(0.28) benign(0.009) TCGA-64-5775-01 7 92762522 92762522 G A SAMD9L Silent p.L921L 0.46 TCGA-64-5775-01 7 94052404 94052404 G A COL1A2 Missense_Mutation p.G847S 0.18 unknown(0) TCGA-64-5775-01 7 94292998 94292998 C A PEG10 Missense_Mutation p.L44I 0.42 deleterious_low_confidence(0.04) possibly_damaging(0.609) TCGA-64-5775-01 7 99580803 99580803 C A AZGP1P1 RNA 0.58 TCGA-64-5775-01 7 99746545 99746545 A T LAMTOR4 5'UTR 0.31 TCGA-64-5775-01 8 102731843 102731843 G A NCALD Silent p.N5N 0.28 TCGA-64-5775-01 8 10480505 10480505 G T RP1L1 Silent p.S69S 0.33 TCGA-64-5775-01 8 104897708 104897708 G - RIMS2 Frame_Shift_Del p.D295Tfs*15 0.29 TCGA-64-5775-01 8 105235886 105235886 C A RIMS2 Intron 0.64 TCGA-64-5775-01 8 105503136 105503136 C A LRP12 Missense_Mutation p.G782V 0.21 tolerated_low_confidence(0.28) benign(0.001) TCGA-64-5775-01 8 113299337 113299337 C G CSMD3 Missense_Mutation p.C3096S 0.27 deleterious(0.03) possibly_damaging(0.584) TCGA-64-5775-01 8 113347651 113347651 C A CSMD3 Missense_Mutation p.A2358S 0.50 deleterious(0.03) possibly_damaging(0.855) TCGA-64-5775-01 8 121228707 121228707 C G COL14A1 Missense_Mutation p.A572G 0.52 tolerated(0.09) benign(0.099) TCGA-64-5775-01 8 133945830 133945830 G A TG Missense_Mutation p.S1614N 0.27 tolerated(0.55) benign(0.138) TCGA-64-5775-01 8 134050794 134050794 G T SLA Nonsense_Mutation p.S309* 0.29 TCGA-64-5775-01 8 139788254 139788254 C G COL22A1 Splice_Site p.X587_splice 0.15 TCGA-64-5775-01 8 145113021 145113021 C T OPLAH Missense_Mutation p.G327E 0.22 deleterious(0.01) probably_damaging(0.989) TCGA-64-5775-01 8 145634558 145634558 T A CPSF1 Splice_Site 0.59 TCGA-64-5775-01 8 18079724 18079725 - G NAT1 Frame_Shift_Ins p.D119Gfs*29 0.31 TCGA-64-5775-01 8 27364421 27364421 G T EPHX2 Silent p.L190L 0.38 TCGA-64-5775-01 8 3265713 3265713 C T CSMD1 Silent p.G593G 0.40 TCGA-64-5775-01 8 36793073 36793073 C A KCNU1 Missense_Mutation p.P1029T 0.49 deleterious(0.03) benign(0.141) TCGA-64-5775-01 8 38274924 38274924 T C FGFR1 Silent p.T552T 0.72 TCGA-64-5775-01 8 62212569 62212569 C G CLVS1 Missense_Mutation p.I61M 0.28 tolerated(0.1) possibly_damaging(0.82) TCGA-64-5775-01 8 66992626 66992626 C A DNAJC5B Silent p.I116I 0.32 TCGA-64-5775-01 8 67509761 67509761 C A MYBL1 Missense_Mutation p.G106W 0.44 deleterious(0) probably_damaging(1) TCGA-64-5775-01 8 68111060 68111060 C G ARFGEF1 3'UTR 0.47 TCGA-64-5775-01 8 75761495 75761495 C A PI15 3'UTR 0.61 TCGA-64-5775-01 8 7718286 7718286 G T SPAG11A Intron 0.18 TCGA-64-5775-01 8 77768253 77768253 T A ZFHX4 Silent p.I3032I 0.32 TCGA-64-5775-01 8 87081723 87081723 C A PSKH2 Silent p.A43A 0.61 TCGA-64-5775-01 8 87242304 87242304 G A SLC7A13 Missense_Mutation p.A68V 0.58 tolerated(0.07) possibly_damaging(0.609) TCGA-64-5775-01 8 87242305 87242305 C G SLC7A13 Missense_Mutation p.A68P 0.57 deleterious(0) probably_damaging(0.988) TCGA-64-5775-01 8 90949303 90949303 C G NBN Missense_Mutation p.V729L 0.47 tolerated(0.29) possibly_damaging(0.656) TCGA-64-5775-01 8 99961564 99961564 G C OSR2 Missense_Mutation p.E128D 0.27 tolerated(0.08) benign(0.034) TCGA-64-5775-01 9 101748161 101748161 A T COL15A1 Missense_Mutation p.T139S 0.20 deleterious(0) probably_damaging(0.944) TCGA-64-5775-01 9 103348395 103348395 G T MURC Nonsense_Mutation p.E253* 0.20 TCGA-64-5775-01 9 114156013 114156013 G T KIAA0368 Missense_Mutation p.S1153Y 0.18 deleterious(0.01) possibly_damaging(0.689) TCGA-64-5775-01 9 117118346 117118346 T A AKNA Missense_Mutation p.R973W 0.43 deleterious(0) probably_damaging(0.988) TCGA-64-5775-01 9 121976387 121976387 C A BRINP1 Missense_Mutation p.Q244H 0.20 deleterious(0.02) benign(0.276) TCGA-64-5775-01 9 124801637 124801637 C A TTLL11 Missense_Mutation p.G248V 0.61 deleterious(0) probably_damaging(0.996) TCGA-64-5775-01 9 125282291 125282291 G T OR1J4 Missense_Mutation p.S291I 0.22 deleterious_low_confidence(0) possibly_damaging(0.813) TCGA-64-5775-01 9 133542010 133542010 C G PRDM12 Missense_Mutation p.S80C 0.51 deleterious(0) possibly_damaging(0.585) TCGA-64-5775-01 9 135781222 135781222 G A TSC1 Silent p.F581F 0.26 TCGA-64-5775-01 9 139107123 139107123 T C QSOX2 Missense_Mutation p.I413V 0.62 tolerated(1) benign(0.003) TCGA-64-5775-01 9 18776906 18776906 G T ADAMTSL1 Silent p.T893T 0.89 TCGA-64-5775-01 9 4706108 4706109 TA - CDC37L1 Frame_Shift_Del p.*338I 0.50 TCGA-64-5775-01 9 75357402 75357402 G T TMC1 Missense_Mutation p.A166S 0.41 tolerated(0.49) benign(0.099) TCGA-64-5775-01 9 77377235 77377235 C A TRPM6 Missense_Mutation p.G1451V 0.48 deleterious_low_confidence(0) probably_damaging(1) TCGA-64-5775-01 9 79321559 79321559 C A PRUNE2 Missense_Mutation p.E1877D 0.40 deleterious(0.04) benign(0.037) TCGA-64-5775-01 9 79323135 79323135 G C PRUNE2 Missense_Mutation p.A1352G 0.49 deleterious(0) benign(0.293) TCGA-64-5775-01 9 88292465 88292465 T A AGTPBP1 Nonsense_Mutation p.K108* 0.27 TCGA-64-5775-01 9 91616117 91616117 T A S1PR3 Translation_Start_Site p.M1? 0.27 deleterious_low_confidence(0) benign(0.115) TCGA-64-5775-01 9 95609812 95609812 C A ZNF484 Missense_Mutation p.K421N 0.41 deleterious(0) probably_damaging(0.997) TCGA-64-5775-01 X 101623452 101623452 C A NXF2B Missense_Mutation p.D242Y 0.27 deleterious(0) probably_damaging(0.964) TCGA-64-5775-01 X 11682515 11682515 C A ARHGAP6 Missense_Mutation p.G145V 1.00 deleterious_low_confidence(0.01) benign(0.157) TCGA-64-5775-01 X 125299759 125299759 C A DCAF12L2 Missense_Mutation p.R50M 0.88 deleterious(0) benign(0.232) TCGA-64-5775-01 X 12904999 12904999 C A TLR7 Missense_Mutation p.Q458K 0.83 tolerated(0.43) benign(0.004) TCGA-64-5775-01 X 134494750 134494750 A C ZNF449 Silent p.R436R 0.77 TCGA-64-5775-01 X 134655006 134655006 G T DDX26B Missense_Mutation p.G30V 0.86 deleterious(0) probably_damaging(0.986) TCGA-64-5775-01 X 134709151 134709151 G C DDX26B Missense_Mutation p.K591N 0.84 tolerated(0.09) probably_damaging(0.966) TCGA-64-5775-01 X 135485469 135485469 C A GPR112 Missense_Mutation p.P2881Q 0.58 tolerated(0.07) benign(0.207) TCGA-64-5775-01 X 135485479 135485479 G A GPR112 Silent p.P2884P 0.64 TCGA-64-5775-01 X 1419441 1419441 G T CSF2RA Missense_Mutation p.A290S 0.30 tolerated(0.1) possibly_damaging(0.905) TCGA-64-5775-01 X 155003584 155003584 G C SPRY3 Missense_Mutation p.Q17H 0.31 deleterious(0) probably_damaging(0.999) TCGA-64-5775-01 X 24767091 24767091 G A POLA1 Silent p.V976V 0.76 TCGA-64-5775-01 X 3229560 3229560 A T MXRA5 Silent p.G2228G 0.80 TCGA-64-5775-01 X 34962075 34962075 A T FAM47B Missense_Mutation p.K376M 0.86 deleterious(0.02) possibly_damaging(0.794) TCGA-64-5775-01 X 47775357 47775357 G T ZNF81 Nonsense_Mutation p.G438* 0.84 TCGA-64-5775-01 X 72667443 72667443 T C CDX4 Silent p.P118P 0.71 TCGA-64-5775-01 X 79282284 79282284 C G TBX22 Missense_Mutation p.Q239E 0.85 tolerated(0.05) benign(0.072) TCGA-64-5775-01 X 79936987 79936987 C A BRWD3 Missense_Mutation p.A1503S 0.80 tolerated_low_confidence(0.19) benign(0.039) TCGA-64-5775-01 X 83591885 83591885 T C HDX Missense_Mutation p.E555G 0.94 tolerated(0.11) benign(0.045) TCGA-64-5775-01 X 85233835 85233835 C G CHM Missense_Mutation p.E84Q 0.84 deleterious(0.02) probably_damaging(0.912) TCGA-64-5775-01 X 89177268 89177268 G T TGIF2LX Missense_Mutation p.V62F 0.87 deleterious(0.01) probably_damaging(0.993) TCGA-64-5778-01 10 103384540 103384540 G A FBXW4 Silent p.C266C 0.24 TCGA-64-5778-01 10 105902094 105902094 C T WDR96 Missense_Mutation p.E1406K 0.11 deleterious(0.01) possibly_damaging(0.452) TCGA-64-5778-01 10 112641277 112641277 G T PDCD4 Missense_Mutation p.R110S 0.30 deleterious(0) probably_damaging(0.997) TCGA-64-5778-01 10 121214575 121214575 G T GRK5 Missense_Mutation p.S590I 0.40 deleterious_low_confidence(0) unknown(0) TCGA-64-5778-01 10 16982167 16982167 C A CUBN Silent p.T1804T 0.20 TCGA-64-5778-01 10 17891603 17891603 T G MRC1L1 Missense_Mutation p.C362G 0.18 probably_damaging(1) TCGA-64-5778-01 10 22207776 22207776 C G DNAJC1 Missense_Mutation p.D221H 0.32 deleterious(0) probably_damaging(0.999) TCGA-64-5778-01 10 22680714 22680714 T A SPAG6 Silent p.A354A 0.31 TCGA-64-5778-01 10 22880696 22880696 C T PIP4K2A Silent p.R118R 0.43 TCGA-64-5778-01 10 27539347 27539347 C G RP11-85G18.6 RNA 0.15 TCGA-64-5778-01 10 38246347 38246347 C A ZNF25 Splice_Site p.X48_splice 0.26 TCGA-64-5778-01 10 44112805 44112805 G T ZNF485 Missense_Mutation p.M438I 0.43 tolerated(0.1) benign(0) TCGA-64-5778-01 10 44873734 44873734 G T AL137026.1 Missense_Mutation p.E16D 0.42 benign(0.398) TCGA-64-5778-01 10 50255081 50255081 C A VSTM4 Missense_Mutation p.A262S 0.44 tolerated(0.1) benign(0.014) TCGA-64-5778-01 10 50724060 50724060 C A ERCC6-PGBD3 Missense_Mutation p.M835I 0.35 tolerated_low_confidence(0.1) unknown(0) TCGA-64-5778-01 10 50943166 50943166 G T OGDHL 3'UTR 0.42 TCGA-64-5778-01 10 6054679 6054679 G T IL2RA 3'UTR 0.33 TCGA-64-5778-01 10 70694664 70694664 A T DDX50 Missense_Mutation p.E504V 0.41 deleterious(0) probably_damaging(0.992) TCGA-64-5778-01 10 71851628 71851628 C A H2AFY2 Missense_Mutation p.P132Q 0.51 deleterious(0.02) benign(0.084) TCGA-64-5778-01 10 78646871 78646871 A T KCNMA1 3'Flank 0.43 TCGA-64-5778-01 10 88441349 88441349 G T LDB3 Missense_Mutation p.D160Y 0.24 deleterious(0.02) possibly_damaging(0.594) TCGA-64-5778-01 10 95791904 95791904 G T PLCE1 Missense_Mutation p.K367N 0.35 deleterious_low_confidence(0.01) benign(0.199) TCGA-64-5778-01 10 97607405 97607405 C A ENTPD1 Missense_Mutation p.P351H 0.33 deleterious(0.01) probably_damaging(0.984) TCGA-64-5778-01 11 102647152 102647152 G T MMP10 Missense_Mutation p.P264H 0.36 deleterious(0.01) possibly_damaging(0.602) TCGA-64-5778-01 11 117392117 117392117 G A DSCAML1 Missense_Mutation p.P374L 0.50 deleterious(0.03) probably_damaging(0.913) TCGA-64-5778-01 11 1272371 1272371 C T MUC5B Missense_Mutation p.P4754L 0.22 unknown(0) TCGA-64-5778-01 11 17742882 17742882 C A MYOD1 Missense_Mutation p.P264T 0.31 tolerated(0.09) possibly_damaging(0.691) TCGA-64-5778-01 11 18231471 18231471 G A RP11-113D6.10 Missense_Mutation p.R86Q 0.25 tolerated(0.27) benign(0.313) TCGA-64-5778-01 11 18955987 18955987 G A MRGPRX1 Silent p.A115A 0.14 TCGA-64-5778-01 11 18956059 18956060 GG A MRGPRX1 Frame_Shift_Del p.P91Lfs*11 0.13 TCGA-64-5778-01 11 2426087 2426087 G T TRPM5 3'UTR 0.35 TCGA-64-5778-01 11 36511949 36511949 G A TRAF6 Silent p.T336T 0.16 TCGA-64-5778-01 11 36598063 36598063 C T RAG1 3'UTR 0.14 TCGA-64-5778-01 11 46744801 46744801 C A F2 Missense_Mutation p.Q130K 0.18 deleterious(0) probably_damaging(1) TCGA-64-5778-01 11 47282972 47282972 G T NR1H3 Missense_Mutation p.R227L 0.37 tolerated(0.06) benign(0.011) TCGA-64-5778-01 11 47506016 47506016 T C CELF1 Missense_Mutation p.I150V 0.35 tolerated(1) benign(0) TCGA-64-5778-01 11 47712103 47712103 C T AGBL2 Missense_Mutation p.D386N 0.33 tolerated(0.18) benign(0.282) TCGA-64-5778-01 11 51516184 51516184 T C OR4C46 Silent p.S301S 0.38 TCGA-64-5778-01 11 55563359 55563359 G T OR5D14 Missense_Mutation p.V110L 0.43 deleterious(0.03) benign(0.049) TCGA-64-5778-01 11 55873241 55873241 C A OR8H2 Nonsense_Mutation p.C241* 0.33 TCGA-64-5778-01 11 55904269 55904269 C A OR8J3 Missense_Mutation p.C309F 0.33 deleterious(0.02) benign(0.001) TCGA-64-5778-01 11 56020158 56020158 G A OR5T3 Silent p.L161L 0.14 TCGA-64-5778-01 11 5776568 5776568 T A OR52N4 Missense_Mutation p.Y200N 0.34 deleterious(0.01) possibly_damaging(0.517) TCGA-64-5778-01 11 5841931 5841931 G T OR52N2 Silent p.L122L 0.13 TCGA-64-5778-01 11 5968952 5968952 C A OR56A3 Missense_Mutation p.R126S 0.31 deleterious(0) possibly_damaging(0.809) TCGA-64-5778-01 11 64622062 64622062 C T EHD1 Missense_Mutation p.E450K 0.37 tolerated(0.16) benign(0.167) TCGA-64-5778-01 11 66833438 66833438 C T RHOD Silent p.H68H 0.46 TCGA-64-5778-01 11 67353590 67353590 G T GSTP1 Missense_Mutation p.D118Y 0.40 deleterious(0.02) possibly_damaging(0.547) TCGA-64-5778-01 11 6898490 6898490 T G OR10A4 Silent p.T204T 0.15 TCGA-64-5778-01 11 93912816 93912816 G T PANX1 Missense_Mutation p.Q198H 0.33 tolerated(0.1) benign(0.12) TCGA-64-5778-01 12 104190758 104190758 C A NT5DC3 Nonsense_Mutation p.E223* 0.45 TCGA-64-5778-01 12 107075931 107075931 C A RFX4 Intron 0.42 TCGA-64-5778-01 12 112323739 112323739 G T MAPKAPK5 Nonsense_Mutation p.E290* 0.55 TCGA-64-5778-01 12 18719923 18719923 C T PIK3C2G Missense_Mutation p.H1274Y 0.33 deleterious(0.03) probably_damaging(0.985) TCGA-64-5778-01 12 20870080 20870080 G T SLCO1C1 Missense_Mutation p.V231F 0.37 tolerated(0.19) benign(0.117) TCGA-64-5778-01 12 20896250 20896250 C A SLCO1C1 Missense_Mutation p.P582Q 0.39 deleterious(0.01) possibly_damaging(0.816) TCGA-64-5778-01 12 25148752 25148752 C T C12orf77 Silent p.G132G 0.26 TCGA-64-5778-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.38 deleterious(0.04) probably_damaging(0.993) TCGA-64-5778-01 12 43858522 43858522 C A ADAMTS20 Nonsense_Mutation p.E461* 0.33 TCGA-64-5778-01 12 46342248 46342248 A C SCAF11 Missense_Mutation p.C124G 0.38 deleterious(0.01) benign(0.055) TCGA-64-5778-01 12 50037160 50037160 C T PRPF40B Missense_Mutation p.S787F 0.41 deleterious_low_confidence(0.02) probably_damaging(0.917) TCGA-64-5778-01 12 52941958 52941958 G T KRT71 Missense_Mutation p.A319D 0.14 deleterious(0) probably_damaging(0.978) TCGA-64-5778-01 12 53715373 53715373 C G AAAS 5'UTR 0.31 TCGA-64-5778-01 12 54338921 54338921 C G HOXC13 Missense_Mutation p.R292G 0.38 deleterious(0) probably_damaging(0.997) TCGA-64-5778-01 12 58024791 58024791 A T B4GALNT1 Silent p.V154V 0.35 TCGA-64-5778-01 12 70049458 70049458 G T BEST3 Missense_Mutation p.S412R 0.44 tolerated(0.47) benign(0.004) TCGA-64-5778-01 12 73056892 73056892 G C TRHDE Missense_Mutation p.E998Q 0.49 deleterious(0) probably_damaging(0.969) TCGA-64-5778-01 12 91539908 91539908 T A DCN Missense_Mutation p.Y336F 0.10 deleterious(0.01) benign(0.007) TCGA-64-5778-01 13 103443386 103443386 T A KDELC1 Missense_Mutation p.R316S 0.32 deleterious(0) probably_damaging(1) TCGA-64-5778-01 13 103520541 103520541 G T BIVM-ERCC5 Missense_Mutation p.C1297F 0.31 tolerated(0.3) benign(0.35) TCGA-64-5778-01 13 103718307 103718307 A G SLC10A2 Missense_Mutation p.V98A 0.19 deleterious(0.02) benign(0.42) TCGA-64-5778-01 13 109318301 109318301 C A MYO16 Silent p.S10S 0.34 TCGA-64-5778-01 13 25744194 25744194 C A AMER2 Nonsense_Mutation p.E522* 0.42 TCGA-64-5778-01 13 27333191 27333191 C A GPR12 Silent p.G258G 0.46 TCGA-64-5778-01 13 28240074 28240074 G T POLR1D Missense_Mutation p.R118L 0.30 tolerated_low_confidence(0.05) benign(0.321) TCGA-64-5778-01 13 38225483 38225483 G A TRPC4 Silent p.L666L 0.12 TCGA-64-5778-01 13 72049302 72049302 C A DACH1 Missense_Mutation p.G687V 0.33 benign(0.373) TCGA-64-5778-01 13 78337494 78337494 G T SLAIN1 3'Flank 0.56 TCGA-64-5778-01 13 99127110 99127110 G A STK24 Missense_Mutation p.P200S 0.26 deleterious(0) probably_damaging(0.997) TCGA-64-5778-01 14 107218737 107218737 G T IGHV3-74 Missense_Mutation p.T97K 0.40 deleterious_low_confidence(0.01) benign(0.027) TCGA-64-5778-01 14 20215940 20215940 C A OR4Q3 Silent p.V118V 0.19 TCGA-64-5778-01 14 20295622 20295622 C A OR4N2 Missense_Mutation p.N5K 0.23 deleterious(0.01) possibly_damaging(0.899) TCGA-64-5778-01 14 20666456 20666456 C A OR11G2 Missense_Mutation p.P321Q 0.28 deleterious(0) probably_damaging(1) TCGA-64-5778-01 14 20692663 20692663 G C OR11H6 Silent p.V265V 0.40 TCGA-64-5778-01 14 21359949 21359949 C A RNASE3 Missense_Mutation p.A35D 0.35 deleterious(0) probably_damaging(1) TCGA-64-5778-01 14 21795831 21795831 A T RPGRIP1 Missense_Mutation p.Q920H 0.37 tolerated(0.11) possibly_damaging(0.815) TCGA-64-5778-01 14 23828659 23828659 C A EFS Missense_Mutation p.R343L 0.17 tolerated(0.81) benign(0.233) TCGA-64-5778-01 14 23884706 23884706 G T MYH7 Missense_Mutation p.L1723I 0.26 deleterious(0.01) probably_damaging(0.971) TCGA-64-5778-01 14 29237064 29237064 C G FOXG1 Silent p.A193A 0.31 TCGA-64-5778-01 14 29237494 29237494 C A FOXG1 Missense_Mutation p.H337N 0.23 deleterious(0.01) benign(0.026) TCGA-64-5778-01 14 36005243 36005243 A G INSM2 3'UTR 0.35 TCGA-64-5778-01 14 47120456 47120456 G T RPL10L Missense_Mutation p.R162S 0.40 tolerated(0.06) benign(0.353) TCGA-64-5778-01 14 94510400 94510400 C T OTUB2 Missense_Mutation p.A101V 0.41 tolerated(0.11) benign(0.226) TCGA-64-5778-01 15 100332754 100332754 C A AC090825.1 3'Flank 0.09 TCGA-64-5778-01 15 22369380 22369380 C A OR4M2 Missense_Mutation p.L269I 0.13 tolerated(0.24) possibly_damaging(0.755) TCGA-64-5778-01 15 22864307 22864307 G T TUBGCP5 Silent p.V755V 0.15 TCGA-64-5778-01 15 25470204 25470204 T C SNORD115-27 3'Flank 0.25 TCGA-64-5778-01 15 28195702 28195702 C A OCA2 Intron 0.30 TCGA-64-5778-01 15 29346220 29346220 G T APBA2 Missense_Mutation p.G45C 0.12 deleterious_low_confidence(0.03) benign(0.443) TCGA-64-5778-01 15 33895391 33895391 C A RYR3 Missense_Mutation p.L664M 0.14 benign(0.442) TCGA-64-5778-01 15 34113753 34113753 C A RYR3 Missense_Mutation p.L3649M 0.18 possibly_damaging(0.883) TCGA-64-5778-01 15 35273923 35273923 G A ZNF770 Silent p.V571V 0.15 TCGA-64-5778-01 15 40564712 40564712 A T PAK6 Silent p.T382T 0.20 TCGA-64-5778-01 15 45253761 45253761 C A C15orf43 Missense_Mutation p.D109E 0.17 tolerated(0.92) benign(0.004) TCGA-64-5778-01 15 49118130 49118130 G A SHC4 3'UTR 0.26 TCGA-64-5778-01 15 57544626 57544626 G T TCF12 Missense_Mutation p.R399L 0.40 deleterious(0.04) probably_damaging(0.996) TCGA-64-5778-01 15 59553681 59553681 C A MYO1E Missense_Mutation p.V59F 0.29 deleterious(0) possibly_damaging(0.724) TCGA-64-5778-01 15 70358421 70358421 C A TLE3 Missense_Mutation p.G170V 0.34 deleterious(0.02) possibly_damaging(0.572) TCGA-64-5778-01 15 83333195 83333195 C A AP3B2 Missense_Mutation p.G710C 0.24 deleterious(0.03) probably_damaging(0.981) TCGA-64-5778-01 15 84287069 84287069 C G SH3GL3 3'UTR 0.47 TCGA-64-5778-01 15 91489890 91489890 C T UNC45A Nonsense_Mutation p.Q416* 0.24 TCGA-64-5778-01 16 1306527 1306527 G T TPSD1 Missense_Mutation p.Q31H 0.23 deleterious(0.04) possibly_damaging(0.88) TCGA-64-5778-01 16 15457788 15457788 G - NPIPA5 Frame_Shift_Del p.L261* 0.33 TCGA-64-5778-01 16 21011740 21011740 G C DNAH3 Missense_Mutation p.T2076R 0.29 deleterious(0) probably_damaging(1) TCGA-64-5778-01 16 23364156 23364156 G T SCNN1B Missense_Mutation p.D116Y 0.37 deleterious(0) benign(0.35) TCGA-64-5778-01 16 24981854 24981854 C A ARHGAP17 Silent p.S82S 0.27 TCGA-64-5778-01 16 26147610 26147610 G T HS3ST4 3'UTR 0.44 TCGA-64-5778-01 16 27751579 27751579 A G KIAA0556 Missense_Mutation p.E654G 0.15 deleterious(0.04) benign(0.373) TCGA-64-5778-01 16 27761018 27761018 C T KIAA0556 Missense_Mutation p.R913C 0.38 deleterious(0) probably_damaging(1) TCGA-64-5778-01 16 2868692 2868692 G C PRSS21 Missense_Mutation p.S91T 0.25 tolerated(0.4) benign(0.038) TCGA-64-5778-01 16 28943320 28943320 C A CD19 5'UTR 0.32 TCGA-64-5778-01 16 29889672 29889672 C A SEZ6L2 Missense_Mutation p.G550C 0.26 deleterious(0) probably_damaging(1) TCGA-64-5778-01 16 30941500 30941500 G T FBXL19 Missense_Mutation p.R319L 0.27 deleterious(0.01) possibly_damaging(0.719) TCGA-64-5778-01 16 31422671 31422671 G T ITGAD Missense_Mutation p.G514C 0.29 deleterious(0) probably_damaging(0.997) TCGA-64-5778-01 16 31500068 31500068 G A SLC5A2 Missense_Mutation p.D419N 0.40 deleterious(0.04) benign(0.006) TCGA-64-5778-01 16 31540022 31540022 C T AHSP 3'UTR 0.44 TCGA-64-5778-01 16 3334076 3334077 AG - ZNF263 Frame_Shift_Del p.E87Afs*77 0.22 TCGA-64-5778-01 16 3600416 3600416 C T NLRC3 Silent p.L857L 0.31 TCGA-64-5778-01 16 55690563 55690563 G A SLC6A2 5'UTR 0.33 TCGA-64-5778-01 16 712767 712767 A T WDR90 Missense_Mutation p.T1412S 0.27 deleterious(0.02) probably_damaging(0.952) TCGA-64-5778-01 16 7568325 7568325 C A RBFOX1 Silent p.P88P 0.32 TCGA-64-5778-01 17 17701461 17701461 G T RAI1 Silent p.S1733S 0.29 TCGA-64-5778-01 17 20000015 20000015 C T SPECC1 Silent p.H17H 0.06 TCGA-64-5778-01 17 21319719 21319719 C A KCNJ12 Silent p.P355P 0.16 TCGA-64-5778-01 17 21826375 21826375 G T FAM27L RNA 0.42 TCGA-64-5778-01 17 28380557 28380557 G T EFCAB5 Missense_Mutation p.G529C 0.31 tolerated(0.05) possibly_damaging(0.846) TCGA-64-5778-01 17 293213 293213 C G FAM101B Silent p.A59A 0.45 TCGA-64-5778-01 17 33690157 33690157 G T SLFN11 Missense_Mutation p.Q224K 0.27 tolerated(0.92) benign(0.173) TCGA-64-5778-01 17 35766395 35766395 C T ACACA 5'UTR 0.30 TCGA-64-5778-01 17 39119941 39119941 G T KRT39 Missense_Mutation p.L216I 0.23 deleterious(0) probably_damaging(0.966) TCGA-64-5778-01 17 39389027 39389027 C A KRTAP9-3 Missense_Mutation p.Q92K 0.31 tolerated(0.25) unknown(0) TCGA-64-5778-01 17 39888998 39888998 G T HAP1 Silent p.V174V 0.23 TCGA-64-5778-01 17 40364013 40364013 G A STAT5B Nonsense_Mutation p.Q557* 0.29 TCGA-64-5778-01 17 43368045 43368045 G A MAP3K14 RNA 0.36 TCGA-64-5778-01 17 45895647 45895647 G A OSBPL7 Missense_Mutation p.R196C 0.24 deleterious(0.04) possibly_damaging(0.667) TCGA-64-5778-01 17 46628425 46628425 C A HOXB3 Missense_Mutation p.K189N 0.20 deleterious(0.01) probably_damaging(0.93) TCGA-64-5778-01 17 4864095 4864095 C - SPAG7 Frame_Shift_Del p.E47Sfs*27 0.27 TCGA-64-5778-01 17 51900813 51900813 G C KIF2B Missense_Mutation p.C140S 0.27 tolerated(0.56) benign(0.138) TCGA-64-5778-01 17 54969341 54969341 G A TRIM25 Missense_Mutation p.P538L 0.27 deleterious(0.01) probably_damaging(0.969) TCGA-64-5778-01 17 56620524 56620524 G T C17orf47 Missense_Mutation p.Q342K 0.16 tolerated(0.08) benign(0.002) TCGA-64-5778-01 17 59560841 59560841 A T TBX4 Silent p.S534S 0.40 TCGA-64-5778-01 17 60743900 60743900 G T MRC2 Missense_Mutation p.R260M 0.25 deleterious(0.04) possibly_damaging(0.796) TCGA-64-5778-01 17 72277987 72277987 C A DNAI2 Missense_Mutation p.R11S 0.28 deleterious(0) probably_damaging(0.984) TCGA-64-5778-01 17 72537610 72537610 G T CD300C 3'UTR 0.38 TCGA-64-5778-01 17 73316501 73316501 T A GRB2 Missense_Mutation p.Q201L 0.23 deleterious(0.02) benign(0.017) TCGA-64-5778-01 17 7577565 7577565 T C TP53 Missense_Mutation p.N239S 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-64-5778-01 17 77079627 77079627 G T ENGASE Silent p.T402T 0.15 TCGA-64-5778-01 17 80194624 80194624 C A SLC16A3 Nonsense_Mutation p.C81* 0.30 TCGA-64-5778-01 17 80213371 80213371 C A CSNK1D Missense_Mutation p.E90D 0.33 deleterious_low_confidence(0) possibly_damaging(0.788) TCGA-64-5778-01 17 8092736 8092736 G A C17orf59 Silent p.P241P 0.82 TCGA-64-5778-01 18 21061269 21061269 A - RIOK3 3'UTR 0.31 TCGA-64-5778-01 18 30950088 30950088 G T CCDC178 Missense_Mutation p.P92T 0.51 deleterious(0) probably_damaging(0.954) TCGA-64-5778-01 18 3502601 3502601 C A DLGAP1 Missense_Mutation p.G872W 0.34 deleterious(0) probably_damaging(1) TCGA-64-5778-01 18 47908532 47908532 G T SKA1 Missense_Mutation p.D83Y 0.27 deleterious(0) possibly_damaging(0.827) TCGA-64-5778-01 18 52896228 52896228 C A TCF4 Nonsense_Mutation p.E679* 0.49 TCGA-64-5778-01 18 54363593 54363593 C T WDR7 Missense_Mutation p.S493L 0.06 deleterious(0.03) possibly_damaging(0.744) TCGA-64-5778-01 18 64212068 64212068 T C CDH19 Missense_Mutation p.N283S 0.33 tolerated(0.77) benign(0.047) TCGA-64-5778-01 19 22270783 22270783 G T ZNF257 Missense_Mutation p.M77I 0.26 tolerated(0.55) benign(0) TCGA-64-5778-01 19 22272257 22272257 C A ZNF257 3'UTR 0.46 TCGA-64-5778-01 19 31038886 31038886 C A ZNF536 Missense_Mutation p.A787D 0.14 deleterious(0.02) probably_damaging(1) TCGA-64-5778-01 19 31770398 31770398 C A TSHZ3 Nonsense_Mutation p.E101* 0.77 TCGA-64-5778-01 19 36109807 36109807 G T HAUS5 Silent p.G345G 0.42 TCGA-64-5778-01 19 36120454 36120454 C G RBM42 Missense_Mutation p.P54R 0.35 deleterious_low_confidence(0) possibly_damaging(0.627) TCGA-64-5778-01 19 36831324 36831324 G A ZFP14 Silent p.T468T 0.44 TCGA-64-5778-01 19 37367788 37367788 A G ZNF345 Missense_Mutation p.E19G 0.28 deleterious(0.01) benign(0) TCGA-64-5778-01 19 37440956 37440956 A C ZNF568 Missense_Mutation p.T301P 0.41 deleterious(0) probably_damaging(0.999) TCGA-64-5778-01 19 3784122 3784122 G A MATK Missense_Mutation p.P122L 0.43 deleterious(0.01) possibly_damaging(0.633) TCGA-64-5778-01 19 37904566 37904566 C A ZNF569 Missense_Mutation p.G332C 0.36 deleterious(0) probably_damaging(1) TCGA-64-5778-01 19 38959634 38959634 C A RYR1 Missense_Mutation p.P1137Q 0.35 possibly_damaging(0.727) TCGA-64-5778-01 19 38980787 38980787 G T RYR1 Silent p.A1962A 0.37 TCGA-64-5778-01 19 39008322 39008322 C T RYR1 Missense_Mutation p.R3337W 0.14 benign(0.317) TCGA-64-5778-01 19 39101766 39101766 A T MAP4K1 Silent p.A245A 0.20 TCGA-64-5778-01 19 40408433 40408433 C T FCGBP Missense_Mutation p.G1469E 0.57 probably_damaging(1) TCGA-64-5778-01 19 41387975 41387975 G T CYP2A7 Silent p.L47L 0.09 TCGA-64-5778-01 19 44679818 44679818 G - ZNF226 Frame_Shift_Del p.T136Qfs*14 0.40 TCGA-64-5778-01 19 4558098 4558098 G A SEMA6B Missense_Mutation p.A62V 0.40 tolerated(0.18) benign(0.013) TCGA-64-5778-01 19 49548526 49548526 C A CGB5 Nonsense_Mutation p.S158* 0.38 TCGA-64-5778-01 19 49693476 49693476 A C TRPM4 Silent p.T677T 0.54 TCGA-64-5778-01 19 52659499 52659499 G A ZNF836 Silent p.F479F 0.49 TCGA-64-5778-01 19 53958705 53958705 G A ZNF761 RNA 0.11 TCGA-64-5778-01 19 54561767 54561767 G T VSTM1 Missense_Mutation p.Q50K 0.11 tolerated(0.43) benign(0.17) TCGA-64-5778-01 19 55086909 55086909 C T LILRA2 Missense_Mutation p.T281I 0.44 deleterious(0.02) possibly_damaging(0.783) TCGA-64-5778-01 19 55967071 55967071 C A ISOC2 Nonsense_Mutation p.E94* 0.47 TCGA-64-5778-01 19 55967072 55967072 C A ISOC2 Missense_Mutation p.Q93H 0.41 tolerated(0.07) benign(0.012) TCGA-64-5778-01 19 57646434 57646434 C A ZIM3 Missense_Mutation p.C424F 0.09 deleterious(0) probably_damaging(0.925) TCGA-64-5778-01 19 57869299 57869299 G T ZNF304 3'UTR 0.20 TCGA-64-5778-01 19 58152597 58152597 A T ZNF211 Missense_Mutation p.Q313L 0.58 deleterious(0) benign(0.193) TCGA-64-5778-01 19 58213094 58213094 G T ZNF154 Missense_Mutation p.T408N 0.54 deleterious(0.02) probably_damaging(0.962) TCGA-64-5778-01 19 58420582 58420582 C A ZNF417 Missense_Mutation p.G355V 0.47 tolerated(0.05) probably_damaging(0.943) TCGA-64-5778-01 19 58863972 58863972 G A A1BG Intron 0.09 TCGA-64-5778-01 19 6495933 6495933 C G TUBB4A Missense_Mutation p.V193L 0.32 deleterious_low_confidence(0.04) benign(0.018) TCGA-64-5778-01 19 8152944 8152944 C A FBN3 Missense_Mutation p.D2166Y 0.34 deleterious(0) probably_damaging(0.998) TCGA-64-5778-01 19 9047816 9047816 T A MUC16 Missense_Mutation p.E11272V 0.50 benign(0.016) TCGA-64-5778-01 19 9064152 9064152 G A MUC16 Missense_Mutation p.A7765V 0.46 unknown(0) TCGA-64-5778-01 19 9492374 9492374 A T ZNF177 Missense_Mutation p.Q456L 0.42 tolerated(0.06) benign(0.288) TCGA-64-5778-01 1 100598391 100598391 G A SASS6 5'UTR 0.35 TCGA-64-5778-01 1 10363995 10363995 C A KIF1B Intron 0.16 TCGA-64-5778-01 1 109737059 109737059 A G KIAA1324 Missense_Mutation p.Y655C 0.13 deleterious(0) possibly_damaging(0.831) TCGA-64-5778-01 1 110086428 110086428 C G GPR61 Missense_Mutation p.R262G 0.20 deleterious(0.01) probably_damaging(0.959) TCGA-64-5778-01 1 110655096 110655096 G T UBL4B 5'UTR 0.10 TCGA-64-5778-01 1 111216207 111216207 C - KCNA3 Frame_Shift_Del p.V409Sfs*32 0.35 TCGA-64-5778-01 1 112298538 112298538 G T DDX20 5'UTR 0.43 TCGA-64-5778-01 1 114969832 114969832 G A TRIM33 Missense_Mutation p.P463S 0.20 tolerated(0.31) probably_damaging(0.997) TCGA-64-5778-01 1 116243740 116243740 G C CASQ2 3'UTR 0.42 TCGA-64-5778-01 1 117122093 117122093 C A IGSF3 Missense_Mutation p.W1105C 0.33 deleterious(0) probably_damaging(1) TCGA-64-5778-01 1 117699283 117699283 C T VTCN1 Missense_Mutation p.V120M 0.11 deleterious(0) probably_damaging(0.964) TCGA-64-5778-01 1 149879341 149879341 A G SV2A Missense_Mutation p.L530P 0.28 deleterious(0.04) probably_damaging(0.953) TCGA-64-5778-01 1 149884838 149884838 C T SV2A Silent p.V185V 0.21 TCGA-64-5778-01 1 150529802 150529802 T C ADAMTSL4 Missense_Mutation p.C680R 0.29 deleterious(0) probably_damaging(0.984) TCGA-64-5778-01 1 151509828 151509828 G T CGN 3'UTR 0.39 TCGA-64-5778-01 1 151742669 151742669 C A OAZ3 Nonsense_Mutation p.Y122* 0.20 TCGA-64-5778-01 1 151824854 151824854 G T THEM5 Missense_Mutation p.L69M 0.26 tolerated(0.09) benign(0.321) TCGA-64-5778-01 1 152057341 152057341 G T TCHHL1 3'UTR 0.19 TCGA-64-5778-01 1 152277046 152277046 C A FLG Missense_Mutation p.G3439V 0.32 unknown(0) TCGA-64-5778-01 1 152281816 152281817 - G FLG Frame_Shift_Ins p.Q1849Pfs*5 0.36 TCGA-64-5778-01 1 152327656 152327656 G T FLG2 Missense_Mutation p.S869Y 0.64 unknown(0) TCGA-64-5778-01 1 153283102 153283102 C A PGLYRP3 Missense_Mutation p.G14C 0.29 tolerated(0.12) possibly_damaging(0.838) TCGA-64-5778-01 1 153660630 153660630 T C NPR1 Missense_Mutation p.W784R 0.35 deleterious(0) probably_damaging(0.954) TCGA-64-5778-01 1 153920685 153920685 T A CRTC2 Missense_Mutation p.E661V 0.28 deleterious(0) probably_damaging(0.994) TCGA-64-5778-01 1 155030752 155030752 G A ADAM15 Silent p.Q584Q 0.14 TCGA-64-5778-01 1 155160273 155160273 C A MUC1 Missense_Mutation p.D336Y 0.28 tolerated(0.1) probably_damaging(0.999) TCGA-64-5778-01 1 157805829 157805829 C A CD5L Missense_Mutation p.V58L 0.32 tolerated(0.06) benign(0.298) TCGA-64-5778-01 1 158577102 158577102 C A OR10Z1 Missense_Mutation p.L292I 0.37 deleterious(0.01) probably_damaging(0.991) TCGA-64-5778-01 1 159021489 159021489 T C IFI16 Silent p.T506T 0.37 TCGA-64-5778-01 1 159021490 159021490 G T IFI16 Nonsense_Mutation p.E507* 0.37 TCGA-64-5778-01 1 160137163 160137163 G C ATP1A4 Missense_Mutation p.K484N 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-64-5778-01 1 161954010 161954010 C A OLFML2B Missense_Mutation p.V570L 0.27 deleterious(0) possibly_damaging(0.868) TCGA-64-5778-01 1 162326802 162326804 CTT - NOS1AP In_Frame_Del p.S276del 0.10 TCGA-64-5778-01 1 163313600 163313600 G C NUF2 Missense_Mutation p.E249D 0.23 deleterious(0.02) possibly_damaging(0.773) TCGA-64-5778-01 1 167097478 167097479 - A DUSP27 Frame_Shift_Ins p.E1038Rfs*44 0.31 TCGA-64-5778-01 1 169581604 169581604 C T SELP Missense_Mutation p.G271E 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-64-5778-01 1 173176276 173176276 C A TNFSF4 Missense_Mutation p.A14S 0.26 tolerated(0.23) benign(0.14) TCGA-64-5778-01 1 173703475 173703475 G T KLHL20 Intron 0.22 TCGA-64-5778-01 1 176564445 176564445 G A PAPPA2 Missense_Mutation p.V569I 0.28 tolerated(0.24) benign(0.009) TCGA-64-5778-01 1 178489853 178489853 G T TEX35 Missense_Mutation p.M129I 0.19 tolerated(0.73) possibly_damaging(0.584) TCGA-64-5778-01 1 179339107 179339107 C T AXDND1 Intron 0.32 TCGA-64-5778-01 1 179347807 179347807 A T AXDND1 Missense_Mutation p.K137I 0.34 deleterious(0.02) benign(0.02) TCGA-64-5778-01 1 196642292 196642292 G T CFH Missense_Mutation p.Q81H 0.21 tolerated(0.15) benign(0.009) TCGA-64-5778-01 1 20082238 20082238 C T TMCO4 Missense_Mutation p.R135K 0.26 deleterious(0) probably_damaging(0.977) TCGA-64-5778-01 1 20216956 20216956 G T OTUD3 Silent p.V100V 0.32 TCGA-64-5778-01 1 203669926 203669926 G T ATP2B4 Missense_Mutation p.G259V 0.14 deleterious(0) probably_damaging(1) TCGA-64-5778-01 1 211280720 211280720 C A KCNH1 Splice_Site p.X27_splice 0.25 TCGA-64-5778-01 1 214705501 214705501 C A PTPN14 Intron 0.27 TCGA-64-5778-01 1 215848721 215848721 G C USH2A Missense_Mutation p.P4178A 0.17 probably_damaging(1) TCGA-64-5778-01 1 218610720 218610720 A G TGFB2 Missense_Mutation p.Y351C 0.31 deleterious(0) probably_damaging(1) TCGA-64-5778-01 1 226128808 226128808 C A LEFTY2 Missense_Mutation p.W11C 0.25 tolerated(0.29) probably_damaging(0.99) TCGA-64-5778-01 1 235969372 235969372 G T LYST Missense_Mutation p.Q1022K 0.33 tolerated_low_confidence(0.24) benign(0.05) TCGA-64-5778-01 1 236727849 236727849 C T HEATR1 Silent p.L1516L 0.35 TCGA-64-5778-01 1 237608780 237608780 G C RYR2 Missense_Mutation p.R417P 0.19 probably_damaging(0.98) TCGA-64-5778-01 1 238090572 238090572 C A RP11-193H5.1 RNA 0.12 TCGA-64-5778-01 1 24463712 24463712 G A IL22RA1 Silent p.L88L 0.16 TCGA-64-5778-01 1 247587436 247587436 G A NLRP3 Missense_Mutation p.G231R 0.36 deleterious(0) probably_damaging(1) TCGA-64-5778-01 1 247836335 247836335 G T OR13G1 Missense_Mutation p.H3Q 0.21 tolerated(1) benign(0.001) TCGA-64-5778-01 1 248059478 248059478 G T OR2W3 Missense_Mutation p.G197V 0.28 tolerated(0.28) benign(0.068) TCGA-64-5778-01 1 248129425 248129425 C A OR2AK2 Missense_Mutation p.S264R 0.21 deleterious(0) probably_damaging(0.978) TCGA-64-5778-01 1 248637201 248637201 T A OR2T3 Missense_Mutation p.C184S 0.21 deleterious(0) probably_damaging(0.998) TCGA-64-5778-01 1 248685394 248685394 G T OR2G6 Missense_Mutation p.W149C 0.18 deleterious(0) probably_damaging(0.981) TCGA-64-5778-01 1 249211251 249211251 C T PGBD2 Silent p.F156F 0.08 TCGA-64-5778-01 1 25717390 25717390 C A RHCE Missense_Mutation p.W217C 0.15 deleterious(0) probably_damaging(1) TCGA-64-5778-01 1 27877205 27877205 C A AHDC1 Missense_Mutation p.M474I 0.50 tolerated(0.36) benign(0.043) TCGA-64-5778-01 1 33945125 33945125 G T ZSCAN20 Missense_Mutation p.W79L 0.16 deleterious(0) probably_damaging(1) TCGA-64-5778-01 1 33945126 33945126 G T ZSCAN20 Missense_Mutation p.W79C 0.11 deleterious(0) probably_damaging(1) TCGA-64-5778-01 1 3511967 3511967 G T MEGF6 Missense_Mutation p.A104D 0.36 tolerated(0.2) benign(0.172) TCGA-64-5778-01 1 38227036 38227036 G C EPHA10 Intron 0.13 TCGA-64-5778-01 1 39893130 39893130 A G MACF1 Silent p.Q3378Q 0.30 TCGA-64-5778-01 1 43162350 43162350 T C YBX1 Missense_Mutation p.V131A 0.43 tolerated(0.18) benign(0.004) TCGA-64-5778-01 1 43166670 43166670 A T YBX1 Missense_Mutation p.Q320L 0.41 deleterious(0.02) benign(0.055) TCGA-64-5778-01 1 43870102 43870102 C T SZT2 Missense_Mutation p.R127C 0.15 deleterious(0) probably_damaging(0.983) TCGA-64-5778-01 1 47746154 47746154 G A STIL Missense_Mutation p.S659L 0.06 deleterious(0.01) probably_damaging(0.977) TCGA-64-5778-01 1 4829965 4829965 A T AJAP1 Silent p.I294I 0.18 TCGA-64-5778-01 1 48918776 48918776 C G SPATA6 Missense_Mutation p.D27H 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-64-5778-01 1 52819274 52819274 C A CC2D1B Missense_Mutation p.V832L 0.42 deleterious(0) benign(0.234) TCGA-64-5778-01 1 65098382 65098382 G C CACHD1 Missense_Mutation p.D198H 0.44 tolerated(0.13) possibly_damaging(0.647) TCGA-64-5778-01 1 65323453 65323453 G A JAK1 Silent p.Y448Y 0.18 TCGA-64-5778-01 1 67155937 67155937 C A SGIP1 Missense_Mutation p.A503D 0.19 deleterious(0) probably_damaging(0.981) TCGA-64-5778-01 1 70452024 70452024 C A LRRC7 Missense_Mutation p.L258I 0.07 deleterious(0.02) benign(0.123) TCGA-64-5778-01 1 70618156 70618156 C A LRRC40 Nonsense_Mutation p.E467* 0.44 TCGA-64-5778-01 1 78207349 78207350 CC A USP33 Frame_Shift_Del p.L42Ffs*7 0.29 TCGA-64-5778-01 1 86590978 86590978 G A COL24A1 Silent p.F347F 0.18 TCGA-64-5778-01 1 89730567 89730567 C G GBP5 Missense_Mutation p.L317F 0.44 deleterious(0) probably_damaging(0.992) TCGA-64-5778-01 1 92511171 92511171 G T EPHX4 Silent p.V186V 0.40 TCGA-64-5778-01 1 9324728 9324728 C G H6PD Missense_Mutation p.H726D 0.37 deleterious(0.04) benign(0.431) TCGA-64-5778-01 20 13755882 13755882 C A ESF1 Missense_Mutation p.W357L 0.22 deleterious(0) probably_damaging(0.994) TCGA-64-5778-01 20 3584857 3584857 A G ATRN Missense_Mutation p.N1250S 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-64-5778-01 20 3655206 3655206 C A ADAM33 Missense_Mutation p.R182M 0.36 deleterious(0.05) possibly_damaging(0.827) TCGA-64-5778-01 20 43248977 43248977 G T ADA Silent p.L347L 0.29 TCGA-64-5778-01 20 45358045 45358045 G T SLC2A10 Missense_Mutation p.G489C 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-64-5778-01 20 45362406 45362406 G T SLC2A10 Missense_Mutation p.S520I 0.17 tolerated(0.12) benign(0.265) TCGA-64-5778-01 20 45850047 45850047 C A ZMYND8 Missense_Mutation p.S1066I 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.741) TCGA-64-5778-01 20 50217734 50217734 C A ATP9A 3'UTR 0.21 TCGA-64-5778-01 20 55803293 55803293 G A BMP7 Silent p.H201H 0.28 TCGA-64-5778-01 20 55904873 55904873 G T SPO11 5'UTR 0.24 TCGA-64-5778-01 20 56728599 56728599 G T C20orf85 Splice_Site p.X23_splice 0.35 TCGA-64-5778-01 20 57429321 57429321 G T GNAS Missense_Mutation p.G334V 0.30 deleterious_low_confidence(0) unknown(0) TCGA-64-5778-01 20 57430039 57430039 C T GNAS Silent p.D573D 0.30 TCGA-64-5778-01 20 58883586 58883586 G C MIR646 RNA 0.39 TCGA-64-5778-01 21 11098762 11098762 C A BAGE2 RNA 0.17 TCGA-64-5778-01 21 17443549 17443549 A G LINC00478 RNA 0.31 TCGA-64-5778-01 21 22804541 22804541 G T NCAM2 Missense_Mutation p.V532L 0.32 tolerated(0.19) benign(0.009) TCGA-64-5778-01 21 27254054 27254054 C G APP Missense_Mutation p.R747P 0.24 deleterious(0) probably_damaging(1) TCGA-64-5778-01 21 27945363 27945363 C A CYYR1 5'UTR 0.36 TCGA-64-5778-01 21 31588044 31588044 T C CLDN8 Missense_Mutation p.Y67C 0.22 deleterious(0) probably_damaging(1) TCGA-64-5778-01 21 31768427 31768427 G A KRTAP13-1 Missense_Mutation p.G8E 0.13 deleterious(0.01) possibly_damaging(0.658) TCGA-64-5778-01 21 31914037 31914037 T C KRTAP19-6 Missense_Mutation p.Y39C 0.32 tolerated_low_confidence(0.06) unknown(0) TCGA-64-5778-01 21 34889378 34889378 G A GART Silent p.V675V 0.26 TCGA-64-5778-01 21 38507791 38507791 G T TTC3 Missense_Mutation p.G519C 0.36 tolerated(0.13) probably_damaging(0.972) TCGA-64-5778-01 21 42866466 42866466 C A TMPRSS2 Nonsense_Mutation p.G56* 0.23 TCGA-64-5778-01 21 43531679 43531679 C T UMODL1 Missense_Mutation p.H783Y 0.42 tolerated(0.22) benign(0.291) TCGA-64-5778-01 21 45941951 45941951 C - TSPEAR Frame_Shift_Del p.A461Qfs*108 0.30 TCGA-64-5778-01 21 47531958 47531959 - C COL6A2 Frame_Shift_Ins p.T63Hfs*41 0.23 TCGA-64-5778-01 22 16287625 16287625 G T POTEH Missense_Mutation p.D87E 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.633) TCGA-64-5778-01 22 19230452 19230452 C A CLTCL1 Missense_Mutation p.R176L 0.18 tolerated(0.18) probably_damaging(0.956) TCGA-64-5778-01 22 20761064 20761064 G T ZNF74 Missense_Mutation p.G581W 0.46 deleterious(0) possibly_damaging(0.71) TCGA-64-5778-01 22 23437951 23437951 G T GNAZ Silent p.L23L 0.56 TCGA-64-5778-01 22 30660402 30660402 G T OSM Missense_Mutation p.R77S 0.27 tolerated(0.5) benign(0.017) TCGA-64-5778-01 22 37333941 37333941 G A CSF2RB Missense_Mutation p.M697I 0.31 tolerated(0.54) benign(0) TCGA-64-5778-01 22 38878549 38878549 C G KDELR3 3'Flank 0.12 TCGA-64-5778-01 22 42805469 42805469 A T NFAM1 Missense_Mutation p.V179E 0.08 deleterious(0) possibly_damaging(0.878) TCGA-64-5778-01 22 45767443 45767443 G T SMC1B Missense_Mutation p.L741I 0.29 tolerated(0.05) probably_damaging(0.976) TCGA-64-5778-01 22 46704833 46704833 C A GTSE1 Missense_Mutation p.A252E 0.08 deleterious(0.04) benign(0.037) TCGA-64-5778-01 2 10102598 10102598 G C GRHL1 Silent p.S228S 0.10 TCGA-64-5778-01 2 106761802 106761802 C A UXS1 Missense_Mutation p.G106C 0.30 deleterious(0) probably_damaging(1) TCGA-64-5778-01 2 106761803 106761803 C A UXS1 Silent p.V105V 0.27 TCGA-64-5778-01 2 116485391 116485391 G C DPP10 Splice_Site p.X197_splice 0.32 TCGA-64-5778-01 2 119727764 119727764 C A MARCO Missense_Mutation p.P92T 0.21 tolerated(0.14) benign(0.431) TCGA-64-5778-01 2 119727765 119727765 C A MARCO Missense_Mutation p.P92Q 0.21 tolerated(0.16) possibly_damaging(0.878) TCGA-64-5778-01 2 122486106 122486106 G A NIFK Nonsense_Mutation p.Q191* 0.31 TCGA-64-5778-01 2 127944669 127944669 C A CYP27C1 3'UTR 0.31 TCGA-64-5778-01 2 136561527 136561527 C A LCT Missense_Mutation p.G1546C 0.26 deleterious(0) probably_damaging(0.998) TCGA-64-5778-01 2 141680663 141680663 C T LRP1B Missense_Mutation p.G1064S 0.22 probably_damaging(0.994) TCGA-64-5778-01 2 141986816 141986816 G C LRP1B Missense_Mutation p.I262M 0.30 benign(0.308) TCGA-64-5778-01 2 152214116 152214116 C A TNFAIP6 5'UTR 0.28 TCGA-64-5778-01 2 1642638 1642638 T C PXDN Missense_Mutation p.I1396V 0.25 tolerated(0.33) benign(0.05) TCGA-64-5778-01 2 166605329 166605329 C G GALNT3 Missense_Mutation p.D622H 0.11 deleterious(0) probably_damaging(1) TCGA-64-5778-01 2 170002265 170002265 T C LRP2 Missense_Mutation p.N4327S 0.29 benign(0.21) TCGA-64-5778-01 2 179449567 179449567 C T TTN Missense_Mutation p.D21601N 0.09 TCGA-64-5778-01 2 185731105 185731106 GA - ZNF804A Frame_Shift_Del p.K42Gfs*18 0.37 TCGA-64-5778-01 2 198571111 198571111 G T MARS2 Missense_Mutation p.G328C 0.27 deleterious(0) probably_damaging(1) TCGA-64-5778-01 2 198571470 198571470 T A MARS2 Nonsense_Mutation p.Y447* 0.26 TCGA-64-5778-01 2 210561338 210561338 G T MAP2 Missense_Mutation p.R1418L 0.23 deleterious(0.01) probably_damaging(0.993) TCGA-64-5778-01 2 21230280 21230280 C - APOB Frame_Shift_Del p.E3154Kfs*5 0.29 TCGA-64-5778-01 2 21233969 21233969 G T APOB Missense_Mutation p.T1924N 0.28 possibly_damaging(0.454) TCGA-64-5778-01 2 21251356 21251356 G T APOB Silent p.R558R 0.34 TCGA-64-5778-01 2 212522507 212522507 C A ERBB4 Missense_Mutation p.G640C 0.26 deleterious(0.02) benign(0.141) TCGA-64-5778-01 2 220162048 220162048 G T PTPRN Silent p.A665A 0.30 TCGA-64-5778-01 2 220344800 220344800 A T SPEG Silent p.T1760T 0.24 TCGA-64-5778-01 2 220354290 220354290 G A SPEG Silent p.R2850R 0.30 TCGA-64-5778-01 2 220494042 220494042 G T SLC4A3 Missense_Mutation p.A132S 0.30 tolerated_low_confidence(0.16) benign(0.033) TCGA-64-5778-01 2 228566913 228566913 C A SLC19A3 Missense_Mutation p.G41V 0.30 deleterious(0) possibly_damaging(0.86) TCGA-64-5778-01 2 228736386 228736386 G C DAW1 5'UTR 0.24 TCGA-64-5778-01 2 233391331 233391331 G T CHRND Nonsense_Mutation p.E49* 0.20 TCGA-64-5778-01 2 234637908 234637908 G C UGT1A3 Missense_Mutation p.E46Q 0.28 tolerated(0.58) benign(0.297) TCGA-64-5778-01 2 234967486 234967486 G T SPP2 Missense_Mutation p.V73F 0.30 tolerated(0.22) benign(0.175) TCGA-64-5778-01 2 241706739 241706739 G T KIF1A Missense_Mutation p.N507K 0.24 deleterious(0) possibly_damaging(0.872) TCGA-64-5778-01 2 242814381 242814381 C A CXXC11 Missense_Mutation p.P225H 0.34 deleterious(0.05) possibly_damaging(0.506) TCGA-64-5778-01 2 242814382 242814382 T A CXXC11 Silent p.P225P 0.33 TCGA-64-5778-01 2 25470539 25470539 G A DNMT3A Missense_Mutation p.S312F 0.33 deleterious(0.01) probably_damaging(0.991) TCGA-64-5778-01 2 25754371 25754371 T C DTNB Silent p.P324P 0.24 TCGA-64-5778-01 2 28841261 28841261 C A PLB1 Missense_Mutation p.L1104M 0.29 tolerated(0.09) possibly_damaging(0.802) TCGA-64-5778-01 2 31609340 31609340 G T XDH Missense_Mutation p.L245M 0.31 deleterious(0) probably_damaging(0.988) TCGA-64-5778-01 2 37111118 37111118 G T STRN Missense_Mutation p.S381R 0.22 tolerated(0.13) benign(0.303) TCGA-64-5778-01 2 44078951 44078951 G T ABCG8 Missense_Mutation p.R184L 0.27 deleterious(0.01) possibly_damaging(0.494) TCGA-64-5778-01 2 55252705 55252705 C A RTN4 Missense_Mutation p.D844Y 0.12 deleterious(0) possibly_damaging(0.707) TCGA-64-5778-01 2 69093072 69093072 G A BMP10 Silent p.Y322Y 0.33 TCGA-64-5778-01 2 71632734 71632734 G T ZNF638 Missense_Mutation p.A988S 0.29 tolerated(0.07) benign(0.219) TCGA-64-5778-01 2 73461436 73461436 A G CCT7 5'UTR 0.31 TCGA-64-5778-01 2 74689728 74689728 G A MOGS Silent p.S396S 0.05 TCGA-64-5778-01 2 74751135 74751135 C T DQX1 Missense_Mutation p.R244Q 0.07 tolerated(0.22) benign(0.087) TCGA-64-5778-01 2 79253232 79253232 A G REG3G Missense_Mutation p.M5V 0.32 tolerated(0.12) benign(0.003) TCGA-64-5778-01 2 79363206 79363206 G A REG1P RNA 0.26 TCGA-64-5778-01 2 89247003 89247003 G C IGKV1-5 Missense_Mutation p.A56G 0.31 tolerated(0.13) benign(0.019) TCGA-64-5778-01 2 89292386 89292386 G A IGKV1-8 Silent p.P4P 0.28 TCGA-64-5778-01 2 89475847 89475847 C A IGKV2-24 Missense_Mutation p.G109W 0.30 deleterious(0) probably_damaging(0.987) TCGA-64-5778-01 2 95847613 95847613 G T ZNF2 Missense_Mutation p.C347F 0.40 deleterious(0) probably_damaging(1) TCGA-64-5778-01 2 96789930 96789930 C A ASTL Nonsense_Mutation p.E319* 0.31 TCGA-64-5778-01 3 100962638 100962638 C A IMPG2 Missense_Mutation p.G846V 0.35 deleterious(0.02) possibly_damaging(0.905) TCGA-64-5778-01 3 107524268 107524268 G T BBX Silent p.P930P 0.28 TCGA-64-5778-01 3 108363427 108363427 G T DZIP3 Missense_Mutation p.G520C 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-64-5778-01 3 108626994 108626994 C A GUCA1C Missense_Mutation p.V169F 0.23 deleterious(0.01) possibly_damaging(0.883) TCGA-64-5778-01 3 118624546 118624546 G T IGSF11 Silent p.V200V 0.25 TCGA-64-5778-01 3 123332912 123332912 T A MYLK 3'UTR 0.32 TCGA-64-5778-01 3 136714381 136714381 G A IL20RB Missense_Mutation p.V270I 0.24 deleterious(0.05) benign(0.094) TCGA-64-5778-01 3 137960639 137960639 G T ARMC8 Missense_Mutation p.L270F 0.33 deleterious(0) probably_damaging(0.999) TCGA-64-5778-01 3 14763190 14763190 G T C3orf20 Nonsense_Mutation p.G489* 0.34 TCGA-64-5778-01 3 152554645 152554645 C T P2RY1 Silent p.T358T 0.34 TCGA-64-5778-01 3 154147360 154147360 C A GPR149 Silent p.L15L 0.29 TCGA-64-5778-01 3 15531040 15531040 G T COLQ Silent p.R71R 0.33 TCGA-64-5778-01 3 158983125 158983125 C T IQCJ Missense_Mutation p.P138L 0.23 tolerated_low_confidence(0.21) benign(0.003) TCGA-64-5778-01 3 164908507 164908507 C G SLITRK3 Missense_Mutation p.E38Q 0.25 deleterious(0.01) probably_damaging(0.994) TCGA-64-5778-01 3 35781039 35781039 G C ARPP21 Missense_Mutation p.Q626H 0.11 tolerated(0.18) probably_damaging(0.959) TCGA-64-5778-01 3 35835223 35835224 CC A ARPP21 Frame_Shift_Del p.P739Tfs*42 0.20 TCGA-64-5778-01 3 39323174 39323174 G T CX3CR1 Missense_Mutation p.L5M 0.26 unknown(0) TCGA-64-5778-01 3 42226214 42226214 A T TRAK1 Missense_Mutation p.Q134L 0.33 deleterious(0) benign(0.378) TCGA-64-5778-01 3 440756 440756 T A CHL1 Missense_Mutation p.C1104S 0.25 tolerated(0.05) possibly_damaging(0.856) TCGA-64-5778-01 3 46307361 46307361 A G CCR3 Missense_Mutation p.I259V 0.34 tolerated(1) benign(0.028) TCGA-64-5778-01 3 46492017 46492017 C G LTF Missense_Mutation p.D284H 0.42 deleterious(0) probably_damaging(0.915) TCGA-64-5778-01 3 48612109 48612109 C G COL7A1 Splice_Site p.X2131_splice 0.26 TCGA-64-5778-01 3 48688324 48688324 C - CELSR3 Splice_Site p.X2124_splice 0.27 TCGA-64-5778-01 3 48697761 48697761 T A CELSR3 Silent p.A769A 0.27 TCGA-64-5778-01 3 49749945 49749945 G A RNF123 Missense_Mutation p.V844I 0.30 tolerated(0.32) benign(0.002) TCGA-64-5778-01 3 52825805 52825805 C T ITIH1 Nonsense_Mutation p.Q872* 0.11 TCGA-64-5778-01 3 59908137 59908137 C G FHIT Missense_Mutation p.V95L 0.21 deleterious(0.02) benign(0.114) TCGA-64-5778-01 3 62751616 62751616 G T CADPS Missense_Mutation p.A162D 0.24 deleterious(0) possibly_damaging(0.665) TCGA-64-5778-01 3 64527523 64527523 C A ADAMTS9 Missense_Mutation p.V1730F 0.27 tolerated(0.15) benign(0.069) TCGA-64-5778-01 3 73432672 73432672 C A PDZRN3 Missense_Mutation p.M1015I 0.10 tolerated(0.73) benign(0.001) TCGA-64-5778-01 3 88041054 88041054 A G HTR1F 3'UTR 0.33 TCGA-64-5778-01 3 97251300 97251300 C A EPHA6 Missense_Mutation p.Q767K 0.31 deleterious(0) probably_damaging(0.99) TCGA-64-5778-01 4 114277762 114277762 C A ANK2 Missense_Mutation p.S2663Y 0.45 probably_damaging(1) TCGA-64-5778-01 4 129880846 129880846 C A SCLT1 Missense_Mutation p.C319F 0.49 tolerated(0.07) possibly_damaging(0.855) TCGA-64-5778-01 4 15724522 15724522 G C BST1 Silent p.V272V 0.21 TCGA-64-5778-01 4 15850294 15850294 A T CD38 3'UTR 0.29 TCGA-64-5778-01 4 164394569 164394569 G A TKTL2 Silent p.S106S 0.33 TCGA-64-5778-01 4 17910869 17910869 C A LCORL Missense_Mutation p.G177V 0.27 tolerated(0.3) benign(0.206) TCGA-64-5778-01 4 20550133 20550134 AG T SLIT2 Frame_Shift_Del p.T791Rfs*10 0.31 TCGA-64-5778-01 4 22737808 22737808 C A GBA3 Missense_Mutation p.T88K 0.23 tolerated(0.06) probably_damaging(0.999) TCGA-64-5778-01 4 22820507 22820507 C A GBA3 Silent p.A457A 0.23 TCGA-64-5778-01 4 3255175 3255175 G T MSANTD1 Missense_Mutation p.D188Y 0.32 deleterious(0.01) possibly_damaging(0.773) TCGA-64-5778-01 4 3769638 3769638 C A ADRA2C Silent p.V435V 0.12 TCGA-64-5778-01 4 43032469 43032469 G T GRXCR1 Missense_Mutation p.R262L 0.33 deleterious(0) probably_damaging(0.997) TCGA-64-5778-01 4 43032470 43032470 A T GRXCR1 Silent p.R262R 0.31 TCGA-64-5778-01 4 44624425 44624425 C A YIPF7 3'UTR 0.32 TCGA-64-5778-01 4 5570330 5570330 A T EVC2 Missense_Mutation p.M1133K 0.43 tolerated(1) benign(0.013) TCGA-64-5778-01 4 55946163 55946163 G T KDR Missense_Mutation p.T1339K 0.24 tolerated_low_confidence(0.36) benign(0.006) TCGA-64-5778-01 4 55976691 55976691 T A KDR Missense_Mutation p.K378N 0.39 deleterious(0.01) possibly_damaging(0.678) TCGA-64-5778-01 4 62599218 62599218 A C LPHN3 Missense_Mutation p.N381H 0.17 deleterious(0) probably_damaging(1) TCGA-64-5778-01 4 69342097 69342097 C T TMPRSS11E Silent p.R216R 0.34 TCGA-64-5778-01 4 8082493 8082493 T A ABLIM2 Missense_Mutation p.Q164L 0.43 deleterious(0) probably_damaging(0.964) TCGA-64-5778-01 4 88973291 88973291 T A PKD2 Missense_Mutation p.V566E 0.06 deleterious(0) probably_damaging(0.98) TCGA-64-5778-01 4 90833201 90833201 G T MMRN1 Missense_Mutation p.A284S 0.39 deleterious(0.03) possibly_damaging(0.543) TCGA-64-5778-01 5 102285239 102285239 A G PAM Splice_Site p.X215_splice 0.36 TCGA-64-5778-01 5 11346577 11346577 A T CTNND2 Missense_Mutation p.V512D 0.15 deleterious(0.02) benign(0.027) TCGA-64-5778-01 5 127641291 127641291 C A FBN2 Missense_Mutation p.Q1862H 0.37 deleterious(0.02) possibly_damaging(0.477) TCGA-64-5778-01 5 135390481 135390481 G A TGFBI Silent p.K447K 0.04 TCGA-64-5778-01 5 137426515 137426515 C T WNT8A Missense_Mutation p.T270I 0.21 deleterious(0) probably_damaging(0.999) TCGA-64-5778-01 5 140202495 140202495 G A PCDHA5 Missense_Mutation p.G379S 0.33 deleterious_low_confidence(0.03) possibly_damaging(0.889) TCGA-64-5778-01 5 140590567 140590567 A G PCDHB12 Silent p.S696S 0.11 TCGA-64-5778-01 5 140595689 140595689 G T PCDHB13 Missense_Mutation p.G665V 0.26 deleterious_low_confidence(0) possibly_damaging(0.871) TCGA-64-5778-01 5 140723759 140723759 G A PCDHGA3 Silent p.G53G 0.26 TCGA-64-5778-01 5 140811375 140811375 C T PCDHGA12 Missense_Mutation p.T350I 0.28 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-64-5778-01 5 140890662 140890662 A G PCDHGB6 Silent p.A905A 0.20 TCGA-64-5778-01 5 14474198 14474198 G C TRIO Missense_Mutation p.W2025C 0.10 benign(0.022) TCGA-64-5778-01 5 150846759 150846759 G C SLC36A1 Splice_Site p.X140_splice 0.28 TCGA-64-5778-01 5 150887062 150887062 G A FAT2 Missense_Mutation p.A4057V 0.11 benign(0) TCGA-64-5778-01 5 158139237 158139237 C A EBF1 Missense_Mutation p.G492C 0.32 deleterious_low_confidence(0.03) possibly_damaging(0.861) TCGA-64-5778-01 5 15928579 15928579 C A FBXL7 Silent p.L236L 0.19 TCGA-64-5778-01 5 162944524 162944524 C T MAT2B Intron 0.33 TCGA-64-5778-01 5 170224482 170224482 T A GABRP Silent p.T157T 0.24 TCGA-64-5778-01 5 176002154 176002154 G C CDHR2 Missense_Mutation p.G189R 0.29 deleterious(0) possibly_damaging(0.852) TCGA-64-5778-01 5 24487843 24487843 G T CDH10 Silent p.R766R 0.60 TCGA-64-5778-01 5 24509706 24509706 T C CDH10 Missense_Mutation p.R409G 0.19 tolerated(0.05) benign(0.171) TCGA-64-5778-01 5 37187517 37187517 T A C5orf42 Missense_Mutation p.K1360M 0.12 tolerated(0.06) probably_damaging(0.961) TCGA-64-5778-01 5 39202797 39202797 C A FYB Missense_Mutation p.G99V 0.59 tolerated(0.2) possibly_damaging(0.448) TCGA-64-5778-01 5 43656852 43656852 G T NNT Silent p.V797V 0.15 TCGA-64-5778-01 5 52214578 52214578 G T ITGA1 Missense_Mutation p.V669L 0.50 tolerated(0.18) benign(0.171) TCGA-64-5778-01 5 70672129 70672131 TGG CTT RP11-136K7.2 Intron 0.16 TCGA-64-5778-01 5 75902092 75902092 G T IQGAP2 Missense_Mutation p.D441Y 0.29 deleterious(0.04) probably_damaging(0.999) TCGA-64-5778-01 5 75913420 75913420 T A F2RL2 Missense_Mutation p.Y371F 0.18 deleterious(0) benign(0.1) TCGA-64-5778-01 5 94990059 94990059 G - RFESD Frame_Shift_Del p.G120Efs*3 0.34 TCGA-64-5778-01 5 9629469 9629469 C A TAS2R1 Missense_Mutation p.A226S 0.49 tolerated(0.08) probably_damaging(0.951) TCGA-64-5778-01 5 96460280 96460280 C T LIX1 Missense_Mutation p.A46T 0.33 tolerated(0.09) benign(0) TCGA-64-5778-01 6 110428292 110428292 C A WASF1 Missense_Mutation p.K176N 0.22 deleterious(0) unknown(0) TCGA-64-5778-01 6 110551182 110551182 G T CDC40 Nonsense_Mutation p.G530* 0.22 TCGA-64-5778-01 6 112537579 112537579 C G LAMA4 Missense_Mutation p.G96A 0.31 deleterious(0) probably_damaging(1) TCGA-64-5778-01 6 121642831 121642831 C A TBC1D32 Missense_Mutation p.G89C 0.21 deleterious(0) probably_damaging(0.999) TCGA-64-5778-01 6 129465106 129465106 G A LAMA2 Missense_Mutation p.E234K 0.25 deleterious(0.01) possibly_damaging(0.472) TCGA-64-5778-01 6 129785559 129785559 T A LAMA2 Missense_Mutation p.S2373T 0.23 tolerated(0.18) benign(0.204) TCGA-64-5778-01 6 132938666 132938666 C A TAAR2 Missense_Mutation p.G227W 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-64-5778-01 6 132938667 132938667 C T TAAR2 Silent p.V226V 0.23 TCGA-64-5778-01 6 13644892 13644892 G C RANBP9 Missense_Mutation p.P333A 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-64-5778-01 6 137325893 137325893 T C IL20RA Silent p.Q243Q 0.23 TCGA-64-5778-01 6 149700010 149700010 G T TAB2 Missense_Mutation p.G320V 0.28 deleterious(0) probably_damaging(0.999) TCGA-64-5778-01 6 161470454 161470454 A G MAP3K4 Missense_Mutation p.K384E 0.21 tolerated(0.35) possibly_damaging(0.493) TCGA-64-5778-01 6 165715241 165715241 G A C6orf118 Silent p.A190A 0.15 TCGA-64-5778-01 6 166574331 166574331 C A T Missense_Mutation p.S343I 0.38 deleterious(0.05) benign(0.025) TCGA-64-5778-01 6 26124812 26124812 C G HIST1H2AC Missense_Mutation p.P118A 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.87) TCGA-64-5778-01 6 27778257 27778257 G T HIST1H3H Missense_Mutation p.A136S 0.32 tolerated_low_confidence(0.08) possibly_damaging(0.885) TCGA-64-5778-01 6 31927176 31927176 G A SKIV2L Missense_Mutation p.S42N 0.28 deleterious(0.02) benign(0.025) TCGA-64-5778-01 6 32146358 32146358 A G RNF5 Missense_Mutation p.T24A 0.29 tolerated(0.83) benign(0.009) TCGA-64-5778-01 6 3225005 3225005 C T TUBB2B Missense_Mutation p.E440K 0.30 tolerated_low_confidence(0.24) unknown(0) TCGA-64-5778-01 6 32943245 32943245 G A BRD2 Missense_Mutation p.E140K 0.18 deleterious(0) probably_damaging(0.918) TCGA-64-5778-01 6 35088692 35088692 G T TCP11 Missense_Mutation p.Q250K 0.29 tolerated(0.15) possibly_damaging(0.596) TCGA-64-5778-01 6 36485593 36485593 C A STK38 Missense_Mutation p.D139Y 0.23 deleterious(0) probably_damaging(1) TCGA-64-5778-01 6 43476063 43476063 C A LRRC73 Missense_Mutation p.V177F 0.38 tolerated(0.16) benign(0.277) TCGA-64-5778-01 6 49578778 49578778 G T RHAG Silent p.G342G 0.20 TCGA-64-5778-01 6 49754274 49754274 C A PGK2 Silent p.L209L 0.27 TCGA-64-5778-01 6 49986685 49986685 C T DEFB110 3'UTR 0.24 TCGA-64-5778-01 6 53706983 53706983 G T LRRC1 Missense_Mutation p.A79S 0.25 tolerated(0.11) possibly_damaging(0.803) TCGA-64-5778-01 6 56021688 56021688 C T COL21A1 Silent p.K477K 0.31 TCGA-64-5778-01 6 70878090 70878090 G T COL19A1 Missense_Mutation p.G842W 0.23 deleterious(0) probably_damaging(1) TCGA-64-5778-01 6 70878091 70878091 G T COL19A1 Missense_Mutation p.G842V 0.23 deleterious(0) probably_damaging(1) TCGA-64-5778-01 6 73905174 73905174 G T KCNQ5 3'UTR 0.23 TCGA-64-5778-01 6 80749948 80749948 C G TTK Silent p.S781S 0.27 TCGA-64-5778-01 6 84567041 84567041 C A RIPPLY2 Missense_Mutation p.A107D 0.29 deleterious(0) probably_damaging(1) TCGA-64-5778-01 6 84567143 84567143 G T RIPPLY2 3'UTR 0.36 TCGA-64-5778-01 6 88773885 88773885 G T SPACA1 Missense_Mutation p.V227F 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-64-5778-01 7 100731181 100731181 C A TRIM56 Silent p.P196P 0.21 TCGA-64-5778-01 7 107592472 107592472 G A LAMB1 Silent p.F1092F 0.14 TCGA-64-5778-01 7 11675994 11675994 G T THSD7A Missense_Mutation p.T262N 0.21 tolerated(0.4) benign(0.066) TCGA-64-5778-01 7 117407198 117407198 C - CTTNBP2 Frame_Shift_Del p.E939Sfs*27 0.23 TCGA-64-5778-01 7 120629670 120629670 C A CPED1 5'UTR 0.26 TCGA-64-5778-01 7 121651939 121651939 G T PTPRZ1 Missense_Mutation p.A947S 0.26 tolerated_low_confidence(0.19) benign(0.043) TCGA-64-5778-01 7 121652034 121652034 C G PTPRZ1 Silent p.T978T 0.33 TCGA-64-5778-01 7 130295897 130295897 C G COPG2 Missense_Mutation p.G222R 0.22 tolerated(0.05) possibly_damaging(0.774) TCGA-64-5778-01 7 135261743 135261743 G T NUP205 Missense_Mutation p.R172L 0.51 deleterious(0.03) possibly_damaging(0.738) TCGA-64-5778-01 7 135333220 135333220 A G NUP205 Silent p.L1985L 0.30 TCGA-64-5778-01 7 138946381 138946381 C A UBN2 Missense_Mutation p.T430N 0.25 tolerated(0.48) benign(0) TCGA-64-5778-01 7 141955399 141955399 C T PRSS58 Silent p.L45L 0.20 TCGA-64-5778-01 7 142458452 142458452 C A PRSS1 Missense_Mutation p.N29K 0.05 tolerated(0.13) benign(0.042) TCGA-64-5778-01 7 143036384 143036384 C T CLCN1 Silent p.P480P 0.32 TCGA-64-5778-01 7 149522153 149522153 G T SSPO RNA 0.46 TCGA-64-5778-01 7 152549293 152549293 C T ACTR3B Missense_Mutation p.A345V 0.16 tolerated(0.18) benign(0.038) TCGA-64-5778-01 7 18687575 18687575 T C HDAC9 Silent p.H401H 0.26 TCGA-64-5778-01 7 20793041 20793041 G T ABCB5 Missense_Mutation p.R1163I 0.36 deleterious(0) probably_damaging(1) TCGA-64-5778-01 7 21827064 21827064 A G DNAH11 Missense_Mutation p.I3270V 0.23 probably_damaging(0.998) TCGA-64-5778-01 7 23306169 23306169 G A GPNMB Missense_Mutation p.R363K 0.18 tolerated(0.5) benign(0) TCGA-64-5778-01 7 23358857 23358857 G C IGF2BP3 Missense_Mutation p.T407S 0.31 deleterious(0.04) possibly_damaging(0.464) TCGA-64-5778-01 7 27149826 27149827 - G HOXA3 Frame_Shift_Ins p.L145Pfs*88 0.29 TCGA-64-5778-01 7 28996417 28996417 C A AC005013.5 5'Flank 0.26 TCGA-64-5778-01 7 36338682 36338682 G T EEPD1 Missense_Mutation p.G526V 0.27 deleterious(0) probably_damaging(1) TCGA-64-5778-01 7 41730000 41730000 G C INHBA Missense_Mutation p.Q177E 0.27 tolerated(0.16) possibly_damaging(0.489) TCGA-64-5778-01 7 54617553 54617553 C A VSTM2A Silent p.I108I 0.17 TCGA-64-5778-01 7 57522855 57522855 G T ZNF716 Missense_Mutation p.E81D 0.17 deleterious(0.04) benign(0.009) TCGA-64-5778-01 7 70880936 70880936 G T WBSCR17 Silent p.V217V 0.32 TCGA-64-5778-01 7 70880937 70880937 G T WBSCR17 Missense_Mutation p.V218L 0.31 deleterious(0.02) probably_damaging(0.989) TCGA-64-5778-01 7 82579217 82579217 C T PCLO Missense_Mutation p.G3563S 0.24 unknown(0) TCGA-64-5778-01 7 87041230 87041230 A G ABCB4 Missense_Mutation p.M968T 0.21 tolerated(0.08) benign(0.053) TCGA-64-5778-01 7 92764413 92764413 T C SAMD9L Missense_Mutation p.E291G 0.36 deleterious(0) benign(0.444) TCGA-64-5778-01 7 95662065 95662065 G T DYNC1I1 Missense_Mutation p.W418C 0.30 deleterious(0) probably_damaging(0.998) TCGA-64-5778-01 8 101051226 101051226 A C RGS22 Missense_Mutation p.L700R 0.20 deleterious(0) probably_damaging(1) TCGA-64-5778-01 8 106814054 106814054 C G ZFPM2 Missense_Mutation p.P582A 0.25 tolerated(0.28) probably_damaging(0.939) TCGA-64-5778-01 8 113323375 113323375 C A CSMD3 Nonsense_Mutation p.E2573* 0.10 TCGA-64-5778-01 8 124696964 124696964 T C ANXA13 Splice_Site p.X281_splice 0.30 TCGA-64-5778-01 8 2027642 2027642 C T MYOM2 Silent p.A488A 0.14 TCGA-64-5778-01 8 51442811 51442811 A T SNTG1 Missense_Mutation p.N181Y 0.15 deleterious(0.01) benign(0.285) TCGA-64-5778-01 8 77764145 77764145 C A ZFHX4 Missense_Mutation p.T1663N 0.22 possibly_damaging(0.607) TCGA-64-5778-01 8 87226561 87226561 T C SLC7A13 3'UTR 0.62 TCGA-64-5778-01 8 97172755 97172755 G A GDF6 Missense_Mutation p.R56C 0.40 deleterious(0) possibly_damaging(0.817) TCGA-64-5778-01 9 100222868 100222868 G T TDRD7 Missense_Mutation p.G422C 0.35 tolerated(0.05) possibly_damaging(0.503) TCGA-64-5778-01 9 104449121 104449121 C A GRIN3A Missense_Mutation p.W354L 0.28 deleterious(0.01) benign(0.015) TCGA-64-5778-01 9 107457241 107457241 C A OR13D1 Missense_Mutation p.S180Y 0.18 deleterious(0) probably_damaging(0.98) TCGA-64-5778-01 9 113563055 113563055 C A MUSK Silent p.G799G 0.24 TCGA-64-5778-01 9 114188022 114188022 C T KIAA0368 Splice_Site p.X557_splice 0.06 TCGA-64-5778-01 9 119858355 119858355 G T ASTN2 Missense_Mutation p.T364K 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-64-5778-01 9 124329462 124329462 C T DAB2IP 5'UTR 0.26 TCGA-64-5778-01 9 125288842 125288842 C A OR1N1 Missense_Mutation p.C244F 0.35 deleterious(0) probably_damaging(0.913) TCGA-64-5778-01 9 126137497 126137497 T A CRB2 Missense_Mutation p.C1170S 0.61 deleterious(0) possibly_damaging(0.478) TCGA-64-5778-01 9 130550579 130550579 C T CDK9 Silent p.A173A 0.20 TCGA-64-5778-01 9 131670679 131670679 G C LRRC8A Silent p.T412T 0.13 TCGA-64-5778-01 9 133779435 133779435 G T FIBCD1 3'UTR 0.38 TCGA-64-5778-01 9 134034830 134034830 G T NUP214 Missense_Mutation p.D833Y 0.44 probably_damaging(0.984) TCGA-64-5778-01 9 136203044 136203044 C A SURF6 5'UTR 0.25 TCGA-64-5778-01 9 136405802 136405802 C A ADAMTSL2 Silent p.A165A 0.34 TCGA-64-5778-01 9 136633629 136633629 C A VAV2 Missense_Mutation p.V842L 0.26 tolerated(0.06) benign(0.037) TCGA-64-5778-01 9 137676916 137676916 G C COL5A1 Missense_Mutation p.G856R 0.15 unknown(0) TCGA-64-5778-01 9 140850264 140850264 G T CACNA1B Silent p.A395A 0.79 TCGA-64-5778-01 9 15047938 15047938 A G RP11-54D18.3 RNA 0.39 TCGA-64-5778-01 9 15433602 15433602 G A SNAPC3 Missense_Mutation p.A149T 0.28 tolerated(0.34) benign(0.008) TCGA-64-5778-01 9 21334168 21334168 C A KLHL9 Missense_Mutation p.D231Y 0.33 deleterious(0.04) benign(0.363) TCGA-64-5778-01 9 32424649 32424649 T A ACO1 Missense_Mutation p.C392S 0.26 tolerated(0.14) possibly_damaging(0.502) TCGA-64-5778-01 9 32630549 32630549 T C TAF1L Missense_Mutation p.T1677A 0.33 tolerated_low_confidence(0.31) benign(0.002) TCGA-64-5778-01 9 32631092 32631092 A T TAF1L Missense_Mutation p.C1496S 0.25 deleterious(0.03) possibly_damaging(0.455) TCGA-64-5778-01 9 5921606 5921606 C A KIAA2026 Missense_Mutation p.V1464L 0.31 tolerated(1) benign(0.005) TCGA-64-5778-01 9 72879306 72879306 G T SMC5 Missense_Mutation p.C91F 0.19 deleterious(0) probably_damaging(1) TCGA-64-5778-01 9 72965093 72965093 G A SMC5 Missense_Mutation p.E985K 0.10 deleterious(0) probably_damaging(0.992) TCGA-64-5778-01 9 77502755 77502756 - T TRPM6 Frame_Shift_Ins p.E8Gfs*11 0.16 TCGA-64-5778-01 9 78710935 78710935 G C PCSK5 Missense_Mutation p.G342R 0.12 deleterious(0) probably_damaging(1) TCGA-64-5778-01 9 90501444 90501444 C T SPATA31E1 Missense_Mutation p.S681F 0.19 tolerated(0.26) possibly_damaging(0.749) TCGA-64-5778-01 9 90501555 90501555 G T SPATA31E1 Missense_Mutation p.R718L 0.28 tolerated(0.11) benign(0.01) TCGA-64-5778-01 X 109919543 109919543 C G CHRDL1 Missense_Mutation p.M431I 0.15 tolerated(0.32) benign(0.2) TCGA-64-5778-01 X 118979178 118979178 A C UPF3B Missense_Mutation p.V151G 0.61 deleterious(0) possibly_damaging(0.542) TCGA-64-5778-01 X 130215841 130215841 T A ARHGAP36 Missense_Mutation p.Y68N 0.65 deleterious(0) probably_damaging(0.998) TCGA-64-5778-01 X 135429209 135429209 G C GPR112 Missense_Mutation p.R1115T 0.55 deleterious(0.04) benign(0.007) TCGA-64-5778-01 X 140992863 140992863 G T MAGEC1 Splice_Site p.X2_splice 0.50 TCGA-64-5778-01 X 140996099 140996099 C A MAGEC1 Missense_Mutation p.P970H 0.57 deleterious(0) unknown(0) TCGA-64-5778-01 X 144904367 144904367 G T SLITRK2 Missense_Mutation p.D142Y 0.54 deleterious(0) probably_damaging(1) TCGA-64-5778-01 X 155233519 155233519 C A IL9R Missense_Mutation p.H144Q 0.17 deleterious(0) probably_damaging(0.994) TCGA-64-5778-01 X 32430028 32430028 A T DMD Silent p.A1358A 0.86 TCGA-64-5778-01 X 34962859 34962859 C A FAM47B Missense_Mutation p.D637E 0.67 tolerated(0.34) benign(0.356) TCGA-64-5778-01 X 48780398 48780398 C T OTUD5 3'UTR 0.60 TCGA-64-5778-01 X 49065117 49065117 G T CACNA1F Missense_Mutation p.R1672S 0.59 tolerated(0.31) benign(0) TCGA-64-5778-01 X 49142326 49142326 G A PPP1R3F Missense_Mutation p.A392T 0.53 tolerated_low_confidence(0.09) benign(0) TCGA-64-5778-01 X 53642720 53642720 C A HUWE1 Silent p.T678T 0.65 TCGA-64-5778-01 X 53643940 53643940 C T HUWE1 Missense_Mutation p.D650N 0.50 probably_damaging(0.995) TCGA-64-5778-01 X 5821830 5821830 T A NLGN4X Missense_Mutation p.T297S 0.49 tolerated(0.1) probably_damaging(0.966) TCGA-64-5778-01 X 69622523 69622523 C A KIF4A Missense_Mutation p.A866D 0.71 deleterious(0) probably_damaging(0.98) TCGA-64-5778-01 X 79278703 79278703 A G TBX22 Missense_Mutation p.D107G 0.68 deleterious(0) possibly_damaging(0.61) TCGA-64-5778-01 X 82763299 82763299 C T POU3F4 5'UTR 0.27 TCGA-64-5778-01 X 83129059 83129059 C A CYLC1 Missense_Mutation p.S448Y 0.42 deleterious(0) probably_damaging(0.919) TCGA-64-5778-01 X 85950089 85950089 C A DACH2 Missense_Mutation p.H280N 0.67 tolerated(0.25) benign(0.007) TCGA-64-5778-01 X 91133828 91133828 G T PCDH11X Missense_Mutation p.Q863H 0.63 tolerated(0.06) probably_damaging(0.981) TCGA-64-5778-01 Y 2847526 2847526 A C ZFY Missense_Mutation p.H633P 0.69 deleterious(0) probably_damaging(0.939) TCGA-64-5778-01 Y 4967037 4967037 C A PCDH11Y Missense_Mutation p.A473D 0.59 deleterious(0) benign(0.36) TCGA-64-5779-01 10 101841283 101841283 T A CPN1 Missense_Mutation p.T34S 0.08 tolerated(0.07) benign(0.183) TCGA-64-5779-01 10 112356221 112356221 G A SMC3 Missense_Mutation p.E677K 0.13 tolerated(0.06) benign(0.33) TCGA-64-5779-01 10 116064523 116064523 G C AFAP1L2 Nonsense_Mutation p.Y413* 0.28 TCGA-64-5779-01 10 121335210 121335210 G A TIAL1 Silent p.A382A 0.33 TCGA-64-5779-01 10 13325783 13325783 C A PHYH Silent p.R245R 0.24 TCGA-64-5779-01 10 15103770 15103770 C A OLAH Missense_Mutation p.L124I 0.25 deleterious(0.01) benign(0.117) TCGA-64-5779-01 10 31809063 31809063 C A ZEB1 Missense_Mutation p.P268Q 0.28 deleterious(0) probably_damaging(1) TCGA-64-5779-01 10 50531444 50531444 C A C10orf71 Missense_Mutation p.P285Q 0.21 tolerated(0.08) probably_damaging(1) TCGA-64-5779-01 10 71880924 71880924 C A AIFM2 Missense_Mutation p.G113V 0.21 tolerated(0.1) possibly_damaging(0.517) TCGA-64-5779-01 10 95994067 95994067 G T PLCE1 Nonsense_Mutation p.E738* 0.18 TCGA-64-5779-01 10 99126615 99126615 G C RRP12 Silent p.V1033V 0.07 TCGA-64-5779-01 11 111657158 111657158 C A ALG9 Missense_Mutation p.R436L 0.32 deleterious(0.04) benign(0.043) TCGA-64-5779-01 11 117647604 117647604 C A DSCAML1 Missense_Mutation p.R198L 0.20 tolerated(0.07) probably_damaging(0.999) TCGA-64-5779-01 11 118889011 118889011 T A RPS25 5'UTR 0.18 TCGA-64-5779-01 11 123755300 123755300 G T TMEM225 Silent p.G75G 0.26 TCGA-64-5779-01 11 123909454 123909454 G C OR10G7 Silent p.S85S 0.21 TCGA-64-5779-01 11 124740590 124740590 C - ROBO3 Frame_Shift_Del p.R334Afs*17 0.37 TCGA-64-5779-01 11 125325762 125325762 C A FEZ1 Missense_Mutation p.R303L 0.31 deleterious(0.03) benign(0.247) TCGA-64-5779-01 11 129246011 129246011 C T BARX2 Silent p.I27I 0.29 TCGA-64-5779-01 11 14856585 14856585 G T PDE3B Missense_Mutation p.R755L 0.09 deleterious(0) probably_damaging(0.96) TCGA-64-5779-01 11 14990285 14990285 C A CALCA 3'UTR 0.32 TCGA-64-5779-01 11 17409336 17409336 G A KCNJ11 Silent p.A101A 0.10 TCGA-64-5779-01 11 18103004 18103004 T A SAAL1 Missense_Mutation p.K429M 0.35 deleterious(0.01) probably_damaging(0.994) TCGA-64-5779-01 11 19955296 19955296 G T NAV2 Missense_Mutation p.K525N 0.30 deleterious_low_confidence(0.02) benign(0.21) TCGA-64-5779-01 11 20067038 20067038 C G NAV2 Missense_Mutation p.L1265V 0.30 tolerated(0.25) probably_damaging(0.992) TCGA-64-5779-01 11 36248704 36248704 C T LDLRAD3 Missense_Mutation p.A175V 0.21 deleterious(0) benign(0.195) TCGA-64-5779-01 11 40137021 40137021 C A LRRC4C Silent p.L274L 0.37 TCGA-64-5779-01 11 46702216 46702216 G T ARHGAP1 Missense_Mutation p.N239K 0.29 tolerated(0.07) benign(0.013) TCGA-64-5779-01 11 46727238 46727238 G T ZNF408 Missense_Mutation p.R663I 0.16 tolerated(0.08) benign(0.047) TCGA-64-5779-01 11 5246887 5246887 C A HBB Missense_Mutation p.A129S 0.37 deleterious(0.03) benign(0.058) TCGA-64-5779-01 11 55860845 55860845 C G OR8I2 Missense_Mutation p.P21R 0.22 tolerated(0.09) benign(0.202) TCGA-64-5779-01 11 55944979 55944979 G C OR5J2 Missense_Mutation p.D296H 0.29 deleterious(0) possibly_damaging(0.823) TCGA-64-5779-01 11 56510579 56510579 G A OR9G4 Missense_Mutation p.L237F 0.26 tolerated(0.33) benign(0.02) TCGA-64-5779-01 11 60182961 60182961 C A MS4A14 Missense_Mutation p.P207T 0.24 tolerated(0.19) benign(0.019) TCGA-64-5779-01 11 64662491 64662491 T C ATG2A Missense_Mutation p.H1924R 0.27 tolerated(1) benign(0.015) TCGA-64-5779-01 11 67410162 67410162 G T ACY3 3'UTR 0.36 TCGA-64-5779-01 11 67410163 67410163 G T ACY3 3'UTR 0.33 TCGA-64-5779-01 11 68480780 68480780 G T MTL5 Nonsense_Mutation p.C372* 0.31 TCGA-64-5779-01 11 6977862 6977862 A G ZNF215 3'UTR 0.54 TCGA-64-5779-01 11 72421536 72421536 C A ARAP1 Missense_Mutation p.G437V 0.29 tolerated(0.06) benign(0.002) TCGA-64-5779-01 11 83344258 83344258 C T DLG2 Missense_Mutation p.V646I 0.22 tolerated(0.11) probably_damaging(0.977) TCGA-64-5779-01 11 88911788 88911788 C A TYR Missense_Mutation p.Q223K 0.39 deleterious(0.02) benign(0.394) TCGA-64-5779-01 11 988579 988579 C T AP2A2 Missense_Mutation p.R387W 0.29 deleterious(0.02) probably_damaging(1) TCGA-64-5779-01 12 101603528 101603528 G T SLC5A8 Silent p.A33A 0.32 TCGA-64-5779-01 12 104084208 104084208 T G STAB2 Missense_Mutation p.H1063Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-64-5779-01 12 109723211 109723211 G C FOXN4 Missense_Mutation p.L267V 0.39 deleterious(0) probably_damaging(0.999) TCGA-64-5779-01 12 120884581 120884581 G T GATC Missense_Mutation p.R68L 0.22 tolerated(0.45) benign(0.036) TCGA-64-5779-01 12 120884582 120884582 C T GATC Silent p.R68R 0.20 TCGA-64-5779-01 12 21446879 21446879 C A SLCO1A2 Missense_Mutation p.M479I 0.19 tolerated(0.39) possibly_damaging(0.562) TCGA-64-5779-01 12 21531425 21531425 C A IAPP 3'UTR 0.44 TCGA-64-5779-01 12 22487122 22487122 G T ST8SIA1 Silent p.A15A 0.21 TCGA-64-5779-01 12 29450055 29450055 C G FAR2 Nonsense_Mutation p.S156* 0.12 TCGA-64-5779-01 12 29786214 29786214 C G TMTC1 Missense_Mutation p.V332L 0.17 tolerated(0.12) benign(0.024) TCGA-64-5779-01 12 31632903 31632903 C A DENND5B Missense_Mutation p.R175L 0.30 tolerated(0.26) benign(0.116) TCGA-64-5779-01 12 3686075 3686075 C A PRMT8 Silent p.R251R 0.13 TCGA-64-5779-01 12 39998605 39998605 G T ABCD2 Missense_Mutation p.A455D 0.32 tolerated(0.45) benign(0.001) TCGA-64-5779-01 12 46756848 46756848 C A SLC38A2 Missense_Mutation p.V379L 0.23 deleterious(0.02) probably_damaging(0.934) TCGA-64-5779-01 12 52695778 52695778 C A KRT86 Nonsense_Mutation p.C26* 0.33 TCGA-64-5779-01 12 52884697 52884697 G C KRT6A Missense_Mutation p.A286G 0.28 tolerated(0.14) benign(0.346) TCGA-64-5779-01 12 54379688 54379688 G T HOXC10 Missense_Mutation p.K215N 0.32 tolerated(0.25) benign(0.053) TCGA-64-5779-01 12 56081788 56081788 C G ITGA7 Silent p.L1054L 0.23 TCGA-64-5779-01 12 58009719 58009719 C A ARHGEF25 Missense_Mutation p.Q486K 0.28 deleterious(0) benign(0.401) TCGA-64-5779-01 12 58140819 58140819 C T TSPAN31 Missense_Mutation p.P155S 0.11 tolerated(0.78) benign(0.001) TCGA-64-5779-01 12 6131129 6131129 C A VWF Missense_Mutation p.R1204L 0.19 tolerated(0.07) possibly_damaging(0.726) TCGA-64-5779-01 12 63541201 63541201 C A AVPR1A Missense_Mutation p.G399C 0.28 deleterious(0.04) benign(0.03) TCGA-64-5779-01 12 63544414 63544414 C A AVPR1A Missense_Mutation p.G68V 0.28 deleterious(0) probably_damaging(0.999) TCGA-64-5779-01 12 72366394 72366394 C A TPH2 Missense_Mutation p.A235D 0.29 deleterious(0) possibly_damaging(0.882) TCGA-64-5779-01 12 7656240 7656240 C G CD163 Splice_Site p.X16_splice 0.31 TCGA-64-5779-01 12 76740229 76740229 T C BBS10 Silent p.T512T 0.25 TCGA-64-5779-01 12 8212211 8212211 G T C3AR1 Missense_Mutation p.P191T 0.38 tolerated(0.43) benign(0.003) TCGA-64-5779-01 12 89916817 89916817 C T GALNT4 Missense_Mutation p.A504T 0.25 tolerated(0.1) probably_damaging(0.957) TCGA-64-5779-01 12 9303276 9303276 G C PZP Missense_Mutation p.P1450A 0.13 deleterious(0.03) benign(0.005) TCGA-64-5779-01 13 100518493 100518493 G T CLYBL Splice_Site p.X212_splice 0.37 TCGA-64-5779-01 13 108861556 108861556 A C LIG4 Silent p.G687G 0.37 TCGA-64-5779-01 13 110807653 110807653 A T COL4A1 Missense_Mutation p.W1578R 0.54 unknown(0) TCGA-64-5779-01 13 111927998 111927998 G A ARHGEF7 Silent p.Q485Q 0.44 TCGA-64-5779-01 13 24471191 24471191 G T C1QTNF9B 5'UTR 0.45 TCGA-64-5779-01 13 42042950 42042950 G T RGCC Missense_Mutation p.A128S 0.38 deleterious(0) probably_damaging(0.997) TCGA-64-5779-01 13 45148711 45148711 C T TSC22D1 Silent p.Q500Q 0.22 TCGA-64-5779-01 13 47466589 47466589 G T HTR2A Missense_Mutation p.H183Q 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-64-5779-01 13 78477406 78477406 G T EDNRB Missense_Mutation p.S319Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-64-5779-01 13 95055375 95055376 GA - GPC6 Frame_Shift_Del p.E526Gfs*42 0.36 TCGA-64-5779-01 13 97928509 97928509 C T MBNL2 Missense_Mutation p.P7L 0.43 tolerated(0.91) benign(0.004) TCGA-64-5779-01 14 104492430 104492430 T - TDRD9 Frame_Shift_Del p.L994* 0.12 TCGA-64-5779-01 14 106539105 106539105 C T IGHV1-8 Missense_Mutation p.D109N 0.19 deleterious(0.01) possibly_damaging(0.806) TCGA-64-5779-01 14 20295869 20295869 G C OR4N2 Missense_Mutation p.A88P 0.14 deleterious(0.03) benign(0.017) TCGA-64-5779-01 14 21771691 21771691 T A RPGRIP1 Silent p.A263A 0.35 TCGA-64-5779-01 14 21793123 21793123 A T RPGRIP1 Silent p.I703I 0.41 TCGA-64-5779-01 14 23845093 23845093 G T IL25 3'UTR 0.35 TCGA-64-5779-01 14 32902804 32902804 G T AKAP6 Missense_Mutation p.E35D 0.61 tolerated(0.09) probably_damaging(0.984) TCGA-64-5779-01 14 42373401 42373401 T C LRFN5 3'UTR 0.07 TCGA-64-5779-01 14 55411137 55411137 C A WDHD1 Missense_Mutation p.L1034F 0.13 deleterious(0.02) possibly_damaging(0.836) TCGA-64-5779-01 14 56128173 56128173 G T KTN1 Intron 0.48 TCGA-64-5779-01 14 60976591 60976591 C A SIX6 Missense_Mutation p.R159S 0.29 deleterious(0.02) probably_damaging(0.933) TCGA-64-5779-01 14 68244368 68244368 G A ZFYVE26 Missense_Mutation p.H1628Y 0.23 deleterious(0) probably_damaging(0.916) TCGA-64-5779-01 14 81244339 81244339 C G CEP128 Missense_Mutation p.E755Q 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-64-5779-01 14 94079385 94079385 C G UNC79 Missense_Mutation p.R1156G 0.13 deleterious(0) probably_damaging(0.998) TCGA-64-5779-01 14 95081151 95081151 A T SERPINA3 Missense_Mutation p.T125S 0.13 tolerated(0.4) benign(0.009) TCGA-64-5779-01 14 95582053 95582053 C A DICER1 Missense_Mutation p.D620Y 0.22 deleterious(0) possibly_damaging(0.814) TCGA-64-5779-01 15 23330139 23330139 C A HERC2P2 RNA 0.43 TCGA-64-5779-01 15 26793272 26793272 G T GABRB3 Missense_Mutation p.H364N 0.45 tolerated(0.11) benign(0.004) TCGA-64-5779-01 15 28467327 28467327 A C HERC2 Missense_Mutation p.N1833K 0.27 benign(0) TCGA-64-5779-01 15 34355202 34355202 G A CHRM5 Missense_Mutation p.R95H 0.20 tolerated(0.37) benign(0.013) TCGA-64-5779-01 15 38243304 38243304 G T TMCO5A Missense_Mutation p.V246L 0.44 tolerated(1) benign(0.006) TCGA-64-5779-01 15 42028381 42028381 A T MGA Nonsense_Mutation p.K1307* 0.46 TCGA-64-5779-01 15 49531528 49531528 G C GALK2 Missense_Mutation p.L156F 0.52 deleterious(0) probably_damaging(0.995) TCGA-64-5779-01 15 51041888 51041888 T C SPPL2A Missense_Mutation p.Y41C 0.41 deleterious(0.01) probably_damaging(1) TCGA-64-5779-01 15 63058593 63058593 G T TLN2 Missense_Mutation p.R1723L 0.52 deleterious(0.01) benign(0.051) TCGA-64-5779-01 15 79187165 79187165 G A MORF4L1 Missense_Mutation p.R308Q 0.19 tolerated(0.06) benign(0.061) TCGA-64-5779-01 15 84651629 84651629 A T ADAMTSL3 Silent p.A1083A 0.09 TCGA-64-5779-01 15 85328123 85328123 G A ZNF592 Silent p.G739G 0.25 TCGA-64-5779-01 15 91312742 91312742 G A BLM Missense_Mutation p.M827I 0.19 deleterious(0.03) probably_damaging(0.966) TCGA-64-5779-01 16 23641491 23641491 T C PALB2 Missense_Mutation p.K662E 0.38 tolerated(0.22) benign(0.056) TCGA-64-5779-01 16 27802613 27802613 G T GSG1L 3'UTR 0.69 TCGA-64-5779-01 16 28331793 28331793 G C SBK1 Missense_Mutation p.G276R 0.41 tolerated(0.09) benign(0.03) TCGA-64-5779-01 16 34739714 34739714 C A RP11-80F22.15 RNA 0.57 TCGA-64-5779-01 16 48121986 48121986 C T ABCC12 Silent p.S1162S 0.22 TCGA-64-5779-01 16 51174546 51174546 G T SALL1 Silent p.G529G 0.25 TCGA-64-5779-01 16 54967483 54967483 C G IRX5 Missense_Mutation p.R384G 0.47 tolerated(0.46) unknown(0) TCGA-64-5779-01 16 55601252 55601252 G T CAPNS2 Missense_Mutation p.R195L 0.22 tolerated(0.2) benign(0.004) TCGA-64-5779-01 16 57695697 57695697 A T GPR56 Missense_Mutation p.T591S 0.50 deleterious(0.01) possibly_damaging(0.507) TCGA-64-5779-01 16 701983 701983 C A WDR90 Missense_Mutation p.H333N 0.25 deleterious(0.02) benign(0.15) TCGA-64-5779-01 16 74502911 74502911 T A GLG1 Missense_Mutation p.Q790L 0.23 tolerated(0.24) benign(0.003) TCGA-64-5779-01 16 88722590 88722590 C A MVD Missense_Mutation p.A176S 0.30 tolerated(0.55) benign(0.002) TCGA-64-5779-01 17 11806089 11806089 T C DNAH9 Silent p.S3820S 0.44 TCGA-64-5779-01 17 26680783 26680783 C A POLDIP2 Missense_Mutation p.V125L 0.17 tolerated(0.08) benign(0.017) TCGA-64-5779-01 17 33319597 33319597 G A LIG3 Silent p.L447L 0.28 TCGA-64-5779-01 17 34540017 34540017 G C CCL4L1 3'UTR 0.62 TCGA-64-5779-01 17 35930851 35930851 C G SYNRG Missense_Mutation p.G411A 0.16 tolerated(1) benign(0.044) TCGA-64-5779-01 17 38953436 38953436 C G KRT28 Missense_Mutation p.R263P 0.11 deleterious(0) probably_damaging(0.997) TCGA-64-5779-01 17 3937517 3937517 C - ZZEF1 Frame_Shift_Del p.A2126Qfs*4 0.37 TCGA-64-5779-01 17 39553787 39553787 G T KRT31 Missense_Mutation p.P2H 0.11 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-64-5779-01 17 40474406 40474406 G A STAT3 Silent p.I665I 0.27 TCGA-64-5779-01 17 42636375 42636375 G T FZD2 Missense_Mutation p.R440L 0.23 deleterious(0) probably_damaging(0.995) TCGA-64-5779-01 17 46628146 46628146 C G HOXB3 Missense_Mutation p.M282I 0.16 tolerated(0.11) benign(0.15) TCGA-64-5779-01 17 48561096 48561096 G T RSAD1 Missense_Mutation p.R361L 0.08 deleterious(0) probably_damaging(0.997) TCGA-64-5779-01 17 48745281 48745281 G T ABCC3 Missense_Mutation p.A565S 0.29 tolerated(0.06) probably_damaging(1) TCGA-64-5779-01 17 57288128 57288128 C G SMG8 Missense_Mutation p.P239R 0.33 deleterious(0) probably_damaging(0.994) TCGA-64-5779-01 17 57762959 57762959 G T CLTC Missense_Mutation p.Q1539H 0.17 deleterious(0.02) possibly_damaging(0.836) TCGA-64-5779-01 17 60663513 60663513 G C TLK2 Missense_Mutation p.E462D 0.07 tolerated(0.09) benign(0.16) TCGA-64-5779-01 17 71346823 71346824 - C SDK2 Frame_Shift_Ins p.Q1956Pfs*30 0.29 TCGA-64-5779-01 17 72348372 72348372 G A KIF19 Missense_Mutation p.V625I 0.16 deleterious(0.02) benign(0.022) TCGA-64-5779-01 17 72367995 72367995 C A GPR142 Missense_Mutation p.F215L 0.23 tolerated(0.05) probably_damaging(0.957) TCGA-64-5779-01 17 72443106 72443106 C G GPRC5C Missense_Mutation p.A467G 0.18 tolerated_low_confidence(0.11) benign(0.009) TCGA-64-5779-01 17 76794510 76794510 G A USP36 Missense_Mutation p.R1122C 0.30 deleterious(0) probably_damaging(0.99) TCGA-64-5779-01 17 77768252 77768252 G A CBX8 3'UTR 0.25 TCGA-64-5779-01 17 78327866 78327866 C T RNF213 Silent p.S3542S 0.16 TCGA-64-5779-01 17 9694599 9694599 C A DHRS7C Translation_Start_Site p.M1? 0.40 deleterious(0) unknown(0) TCGA-64-5779-01 18 29451056 29451056 C T TRAPPC8 Missense_Mutation p.S697N 0.12 deleterious(0.04) probably_damaging(0.933) TCGA-64-5779-01 18 29451058 29451058 T A TRAPPC8 Silent p.V696V 0.12 TCGA-64-5779-01 18 44561664 44561664 C T TCEB3B 5'UTR 0.36 TCGA-64-5779-01 18 50278530 50278530 C A DCC Missense_Mutation p.D66E 0.22 tolerated(0.31) benign(0.003) TCGA-64-5779-01 18 56348550 56348550 C T MALT1 Nonsense_Mutation p.Q120* 0.60 TCGA-64-5779-01 18 63529993 63529993 A T CDH7 Silent p.G568G 0.16 TCGA-64-5779-01 18 72999000 72999000 G C TSHZ1 Missense_Mutation p.K501N 0.47 deleterious(0.01) benign(0.025) TCGA-64-5779-01 19 16528760 16528760 G A EPS15L1 Missense_Mutation p.P369L 0.15 tolerated(0.2) benign(0.002) TCGA-64-5779-01 19 21990856 21990856 C A ZNF43 Missense_Mutation p.W661C 0.45 tolerated(0.23) possibly_damaging(0.886) TCGA-64-5779-01 19 31039485 31039485 C T ZNF536 Missense_Mutation p.L987F 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-64-5779-01 19 34180192 34180192 C A CHST8 Silent p.R9R 0.13 TCGA-64-5779-01 19 40478082 40478082 G T PSMC4 Silent p.R22R 0.22 TCGA-64-5779-01 19 40541581 40541581 C G ZNF780B Silent p.G395G 0.27 TCGA-64-5779-01 19 41111393 41111393 C T LTBP4 Silent p.G242G 0.23 TCGA-64-5779-01 19 4180786 4180786 C A SIRT6 Missense_Mutation p.D63Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-64-5779-01 19 42266086 42266086 G A CEACAM6 Missense_Mutation p.A305T 0.05 tolerated(0.08) possibly_damaging(0.892) TCGA-64-5779-01 19 42797203 42797203 G T CIC Missense_Mutation p.V1189L 0.57 possibly_damaging(0.872) TCGA-64-5779-01 19 43859930 43859930 G T CD177 3'UTR 0.24 TCGA-64-5779-01 19 44099262 44099262 C A IRGQ Missense_Mutation p.V77L 0.75 tolerated_low_confidence(0.23) benign(0.065) TCGA-64-5779-01 19 47584880 47584880 G A ZC3H4 Splice_Site p.X444_splice 0.21 TCGA-64-5779-01 19 50208532 50208532 C A CPT1C Missense_Mutation p.T314K 0.23 deleterious(0) probably_damaging(0.953) TCGA-64-5779-01 19 51361540 51361540 C A KLK3 Silent p.A154A 0.25 TCGA-64-5779-01 19 52249336 52249336 C A FPR1 Missense_Mutation p.M304I 0.28 tolerated(0.22) benign(0.002) TCGA-64-5779-01 19 52819189 52819189 G T ZNF480 Missense_Mutation p.R101M 0.20 tolerated(0.28) possibly_damaging(0.514) TCGA-64-5779-01 19 53994890 53994890 G T ZNF813 Missense_Mutation p.K468N 0.34 deleterious(0.02) benign(0.276) TCGA-64-5779-01 19 54201697 54201697 G A MIR523 RNA 0.13 TCGA-64-5779-01 19 54406361 54406361 A G PRKCG Missense_Mutation p.D537G 0.10 deleterious(0) probably_damaging(0.997) TCGA-64-5779-01 19 54567134 54567134 C A VSTM1 5'UTR 0.33 TCGA-64-5779-01 19 55341568 55341568 A G KIR3DL1 Silent p.Q391Q 0.15 TCGA-64-5779-01 19 56459549 56459551 GAC - NLRP8 In_Frame_Del p.R96del 0.16 TCGA-64-5779-01 19 56485022 56485022 G A NLRP8 Missense_Mutation p.E847K 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-64-5779-01 19 58189890 58189890 G T ZSCAN4 Nonsense_Mutation p.G307* 0.31 TCGA-64-5779-01 19 58578379 58578379 C A ZNF135 Missense_Mutation p.P200Q 0.17 tolerated(0.29) benign(0.246) TCGA-64-5779-01 19 7707105 7707105 G T STXBP2 Missense_Mutation p.R227L 0.46 deleterious(0) possibly_damaging(0.844) TCGA-64-5779-01 19 9049834 9049834 C T MUC16 Nonsense_Mutation p.W10599* 0.42 TCGA-64-5779-01 19 9063009 9063009 G T MUC16 Missense_Mutation p.P8146H 0.45 unknown(0) TCGA-64-5779-01 1 111495394 111495394 C T LRIF1 Missense_Mutation p.D38N 0.44 deleterious(0) possibly_damaging(0.908) TCGA-64-5779-01 1 111495395 111495395 C A LRIF1 Silent p.S37S 0.42 TCGA-64-5779-01 1 11319445 11319445 C A MTOR Missense_Mutation p.A8S 0.62 tolerated_low_confidence(0.12) benign(0.004) TCGA-64-5779-01 1 11596579 11596579 G A PTCHD2 Missense_Mutation p.A1339T 0.62 deleterious(0.02) probably_damaging(0.997) TCGA-64-5779-01 1 119427386 119427386 G T TBX15 Missense_Mutation p.S487Y 0.35 deleterious_low_confidence(0) possibly_damaging(0.564) TCGA-64-5779-01 1 1233393 1233393 T A ACAP3 Missense_Mutation p.K339M 0.15 deleterious(0) possibly_damaging(0.852) TCGA-64-5779-01 1 12907513 12907513 T G HNRNPCL1 Missense_Mutation p.K210N 0.50 tolerated(0.11) benign(0.313) TCGA-64-5779-01 1 150980993 150980993 C G PRUNE 5'UTR 0.26 TCGA-64-5779-01 1 152081990 152081990 C A TCHH Missense_Mutation p.V1235F 0.24 unknown(0) TCGA-64-5779-01 1 152280261 152280261 C A FLG Missense_Mutation p.Q2367H 0.26 possibly_damaging(0.522) TCGA-64-5779-01 1 152284709 152284709 C A FLG Missense_Mutation p.G885W 0.33 probably_damaging(1) TCGA-64-5779-01 1 154294481 154294481 C A AQP10 Missense_Mutation p.L60M 0.09 deleterious(0) possibly_damaging(0.897) TCGA-64-5779-01 1 160093111 160093111 G - ATP1A2 Frame_Shift_Del p.F98Sfs*72 0.34 TCGA-64-5779-01 1 174606543 174606543 G C RABGAP1L Missense_Mutation p.D581H 0.27 deleterious(0) probably_damaging(1) TCGA-64-5779-01 1 177001922 177001922 G T ASTN1 Missense_Mutation p.R179S 0.23 deleterious_low_confidence(0) possibly_damaging(0.533) TCGA-64-5779-01 1 180135707 180135707 C T QSOX1 Missense_Mutation p.P116L 0.25 tolerated(0.31) benign(0.02) TCGA-64-5779-01 1 181754858 181754858 C T CACNA1E Missense_Mutation p.P1897S 0.19 tolerated(0.13) possibly_damaging(0.641) TCGA-64-5779-01 1 190203559 190203559 G T BRINP3 Missense_Mutation p.L223I 0.38 deleterious(0.01) probably_damaging(0.987) TCGA-64-5779-01 1 192150556 192150556 G T RGS18 Nonsense_Mutation p.E140* 0.23 TCGA-64-5779-01 1 197021812 197021812 C A F13B Missense_Mutation p.V503L 0.39 deleterious(0.02) possibly_damaging(0.507) TCGA-64-5779-01 1 200977969 200977969 G T KIF21B Silent p.A125A 0.20 TCGA-64-5779-01 1 202722038 202722038 C A KDM5B Missense_Mutation p.V566L 0.08 deleterious(0) possibly_damaging(0.517) TCGA-64-5779-01 1 207751345 207751345 C A CR1 Missense_Mutation p.P1578H 0.18 deleterious(0) probably_damaging(0.925) TCGA-64-5779-01 1 222798126 222798126 G A MIA3 Missense_Mutation p.G95E 0.23 deleterious(0) probably_damaging(0.987) TCGA-64-5779-01 1 228495021 228495021 C G OBSCN Silent p.A5042A 0.33 TCGA-64-5779-01 1 232600634 232600634 C A SIPA1L2 Silent p.S924S 0.20 TCGA-64-5779-01 1 241904910 241904910 C G WDR64 Missense_Mutation p.L462V 0.33 tolerated(0.4) benign(0.125) TCGA-64-5779-01 1 243328308 243328308 C T CEP170 Missense_Mutation p.R985K 0.12 deleterious(0) probably_damaging(0.992) TCGA-64-5779-01 1 248344044 248344044 G T OR2M2 Nonsense_Mutation p.G253* 0.21 TCGA-64-5779-01 1 248344045 248344045 G T OR2M2 Missense_Mutation p.G253V 0.21 deleterious(0) probably_damaging(0.994) TCGA-64-5779-01 1 248550933 248550933 G T OR2T6 Missense_Mutation p.L8F 0.13 tolerated(0.73) benign(0.002) TCGA-64-5779-01 1 248551538 248551538 C A OR2T6 Missense_Mutation p.P210H 0.34 deleterious(0) probably_damaging(0.998) TCGA-64-5779-01 1 26515135 26515135 C G CNKSR1 Missense_Mutation p.P546R 0.25 deleterious(0.01) probably_damaging(1) TCGA-64-5779-01 1 74649253 74649254 TG AGA LRRIQ3 Frame_Shift_Ins p.H39Sfs*15 0.32 TCGA-64-5779-01 1 85547000 85547000 G T WDR63 Nonsense_Mutation p.E63* 0.38 TCGA-64-5779-01 1 93101784 93101784 T C EVI5 Missense_Mutation p.Q485R 0.39 tolerated(0.2) benign(0.024) TCGA-64-5779-01 20 31825664 31825664 A G BPIFA1 Silent p.G49G 0.17 TCGA-64-5779-01 20 35443738 35443738 C A SOGA1 Missense_Mutation p.G703C 0.39 deleterious(0.01) possibly_damaging(0.831) TCGA-64-5779-01 20 37126060 37126060 G T RALGAPB Missense_Mutation p.A152S 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-64-5779-01 20 42694601 42694601 C A TOX2 Missense_Mutation p.Q404K 0.42 deleterious(0.01) probably_damaging(0.937) TCGA-64-5779-01 20 43043227 43043227 G A HNF4A Missense_Mutation p.M191I 0.19 tolerated(0.15) probably_damaging(0.993) TCGA-64-5779-01 20 43836174 43836174 C A SEMG1 Missense_Mutation p.S79Y 0.17 deleterious(0) possibly_damaging(0.478) TCGA-64-5779-01 20 45188622 45188622 T C SLC13A3 3'UTR 0.30 TCGA-64-5779-01 20 47276568 47276568 G A PREX1 Silent p.S590S 0.35 TCGA-64-5779-01 20 48431651 48431651 G - SLC9A8 Frame_Shift_Del p.V45Cfs*16 0.28 TCGA-64-5779-01 20 55027988 55027988 C A CASS4 Missense_Mutation p.L586I 0.24 deleterious(0) probably_damaging(1) TCGA-64-5779-01 20 5921898 5921898 C A TRMT6 Missense_Mutation p.Q402H 0.17 deleterious(0.05) benign(0.047) TCGA-64-5779-01 20 8862318 8862318 C A PLCB1 Missense_Mutation p.P1158H 0.15 deleterious(0.03) probably_damaging(0.986) TCGA-64-5779-01 21 11047558 11047558 T C BAGE2 RNA 0.05 TCGA-64-5779-01 21 34931573 34931573 A T SON Missense_Mutation p.D2120V 0.41 unknown(0) TCGA-64-5779-01 21 35183407 35183407 G T ITSN1 Silent p.V816V 0.23 TCGA-64-5779-01 21 42064832 42064832 C A DSCAM Missense_Mutation p.G138C 0.50 deleterious(0) probably_damaging(1) TCGA-64-5779-01 22 43996080 43996080 G C EFCAB6 Missense_Mutation p.N915K 0.19 tolerated(0.51) benign(0.071) TCGA-64-5779-01 22 45122459 45122459 C T PRR5 Silent p.N112N 0.14 TCGA-64-5779-01 22 50515832 50515832 T C MLC1 Missense_Mutation p.K175E 0.44 deleterious_low_confidence(0.03) possibly_damaging(0.582) TCGA-64-5779-01 2 109513673 109513673 G T EDAR Missense_Mutation p.T346K 0.49 deleterious(0.01) probably_damaging(0.997) TCGA-64-5779-01 2 116525980 116525980 G T DPP10 Missense_Mutation p.Q411H 0.14 deleterious(0.03) benign(0.003) TCGA-64-5779-01 2 125547524 125547524 C A CNTNAP5 Missense_Mutation p.S932Y 0.24 deleterious(0.02) probably_damaging(0.992) TCGA-64-5779-01 2 128775259 128775259 T G SAP130 Missense_Mutation p.M141L 0.11 tolerated_low_confidence(0.19) benign(0.033) TCGA-64-5779-01 2 132021677 132021677 G T POTEE Silent p.R883R 0.28 TCGA-64-5779-01 2 132021678 132021678 G T POTEE Nonsense_Mutation p.E884* 0.27 TCGA-64-5779-01 2 133541091 133541091 G C NCKAP5 Missense_Mutation p.T1098R 0.16 tolerated(0.26) possibly_damaging(0.576) TCGA-64-5779-01 2 158980300 158980300 G T UPP2 Missense_Mutation p.R292I 0.32 deleterious(0.01) benign(0.405) TCGA-64-5779-01 2 168099625 168099625 C A XIRP2 Missense_Mutation p.Q575K 0.75 probably_damaging(0.999) TCGA-64-5779-01 2 169792773 169792773 A T ABCB11 Silent p.S927S 0.68 TCGA-64-5779-01 2 170428301 170428301 T A FASTKD1 Missense_Mutation p.K80M 0.48 deleterious(0.02) possibly_damaging(0.907) TCGA-64-5779-01 2 173355838 173355838 A G ITGA6 Silent p.K922K 0.19 TCGA-64-5779-01 2 179433898 179433898 T C TTN Missense_Mutation p.N25654S 0.23 TCGA-64-5779-01 2 180634429 180634429 G C ZNF385B Missense_Mutation p.D18E 0.13 tolerated_low_confidence(0.16) benign(0.004) TCGA-64-5779-01 2 182360546 182360546 C A ITGA4 Missense_Mutation p.S474R 0.18 tolerated(0.42) benign(0.004) TCGA-64-5779-01 2 191856010 191856010 C A STAT1 Silent p.T327T 0.46 TCGA-64-5779-01 2 202671450 202671450 G T CDK15 Missense_Mutation p.E21D 0.36 tolerated_low_confidence(0.12) benign(0.144) TCGA-64-5779-01 2 207174292 207174292 G T ZDBF2 Silent p.L1680L 0.18 TCGA-64-5779-01 2 207583014 207583014 T A DYTN 5'UTR 0.21 TCGA-64-5779-01 2 210560646 210560646 G A MAP2 Missense_Mutation p.R1251H 0.30 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-64-5779-01 2 220161165 220161165 C A PTPRN Missense_Mutation p.W795L 0.28 deleterious(0) probably_damaging(1) TCGA-64-5779-01 2 220404538 220404538 G C CHPF Missense_Mutation p.A632G 0.50 deleterious(0.01) possibly_damaging(0.845) TCGA-64-5779-01 2 224462250 224462250 T C SCG2 Missense_Mutation p.Y584C 0.38 deleterious(0.04) probably_damaging(0.998) TCGA-64-5779-01 2 228884871 228884871 A G SPHKAP Silent p.D233D 0.06 TCGA-64-5779-01 2 27360443 27360443 C A C2orf53 Missense_Mutation p.C252F 0.50 deleterious(0) probably_damaging(0.999) TCGA-64-5779-01 2 40657160 40657160 G T SLC8A1 Nonsense_Mutation p.Y87* 0.43 TCGA-64-5779-01 2 49189813 49189813 C A FSHR 3'UTR 0.33 TCGA-64-5779-01 2 55582735 55582735 T A CCDC88A Silent p.I260I 0.29 TCGA-64-5779-01 2 64211150 64211150 T A VPS54 5'UTR 0.40 TCGA-64-5779-01 2 69409624 69409624 G T ANTXR1 Splice_Site p.X396_splice 0.27 TCGA-64-5779-01 2 6991603 6991603 C A CMPK2 Missense_Mutation p.A402S 0.48 tolerated(0.09) benign(0.398) TCGA-64-5779-01 2 70188744 70188744 G C ASPRV1 Missense_Mutation p.A26G 0.18 tolerated_low_confidence(0.52) benign(0) TCGA-64-5779-01 2 70903946 70903946 G A ADD2 Silent p.A525A 0.14 TCGA-64-5779-01 2 74479366 74479366 C A SLC4A5 Missense_Mutation p.G473V 0.20 tolerated(0.14) benign(0.06) TCGA-64-5779-01 2 79386527 79386527 A G REG3A Missense_Mutation p.L2P 0.21 deleterious(0.02) benign(0.06) TCGA-64-5779-01 2 95952241 95952241 G T PROM2 Silent p.L654L 0.65 TCGA-64-5779-01 3 108363233 108363233 C A DZIP3 Missense_Mutation p.P455H 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-64-5779-01 3 11301960 11301960 G T HRH1 Missense_Mutation p.A413S 0.26 deleterious(0) probably_damaging(1) TCGA-64-5779-01 3 119132757 119132757 A G ARHGAP31 Missense_Mutation p.K661E 0.29 deleterious(0) probably_damaging(0.997) TCGA-64-5779-01 3 140401341 140401341 C A TRIM42 Missense_Mutation p.Q127K 0.10 tolerated(0.62) benign(0.021) TCGA-64-5779-01 3 140401536 140401536 G T TRIM42 Missense_Mutation p.D192Y 0.16 deleterious(0.04) benign(0.143) TCGA-64-5779-01 3 143550975 143550975 G C SLC9A9 Missense_Mutation p.F88L 0.22 tolerated(0.65) benign(0.257) TCGA-64-5779-01 3 151165710 151165710 T G IGSF10 Missense_Mutation p.I687L 0.39 tolerated(0.72) benign(0.006) TCGA-64-5779-01 3 167754671 167754671 G A GOLIM4 Nonsense_Mutation p.Q266* 0.37 TCGA-64-5779-01 3 186338505 186338505 C A AHSG Missense_Mutation p.S297Y 0.32 deleterious(0.04) benign(0.26) TCGA-64-5779-01 3 194080398 194080398 C T LRRC15 Missense_Mutation p.V465I 0.16 tolerated(0.07) benign(0.117) TCGA-64-5779-01 3 196210727 196210727 G A RNF168 Silent p.P198P 0.36 TCGA-64-5779-01 3 26751037 26751037 A T LRRC3B 5'UTR 0.29 TCGA-64-5779-01 3 38136527 38136527 G T DLEC1 Missense_Mutation p.D693Y 0.29 deleterious(0) probably_damaging(0.959) TCGA-64-5779-01 3 39226990 39226990 G A XIRP1 Missense_Mutation p.P1316L 0.14 deleterious(0) benign(0.212) TCGA-64-5779-01 3 447274 447274 G T CHL1 Missense_Mutation p.E1185D 0.18 tolerated(0.95) benign(0.071) TCGA-64-5779-01 3 56763635 56763635 C A ARHGEF3 Missense_Mutation p.R447I 0.12 deleterious(0) probably_damaging(0.999) TCGA-64-5779-01 3 57302535 57302535 G T ASB14 3'UTR 0.19 TCGA-64-5779-01 3 57302536 57302536 G T ASB14 3'UTR 0.19 TCGA-64-5779-01 3 58253072 58253072 G T ABHD6 Missense_Mutation p.K92N 0.15 tolerated(0.06) benign(0.211) TCGA-64-5779-01 3 77651358 77651358 C G ROBO2 Intron 0.24 TCGA-64-5779-01 3 9106117 9106117 C - SRGAP3 Frame_Shift_Del p.R212Pfs*4 0.20 TCGA-64-5779-01 3 97356925 97356925 C G EPHA6 Missense_Mutation p.T928S 0.42 tolerated(1) benign(0.058) TCGA-64-5779-01 3 98530098 98530098 C - DCBLD2 Frame_Shift_Del p.E506Nfs*14 0.32 TCGA-64-5779-01 3 9877020 9877020 G T TTLL3 Missense_Mutation p.K865N 0.07 deleterious_low_confidence(0) benign(0.024) TCGA-64-5779-01 4 104577497 104577498 GG TTT TACR3 Nonsense_Mutation p.Y247* 0.24 TCGA-64-5779-01 4 106858268 106858268 C G NPNT Missense_Mutation p.P153R 0.14 deleterious(0) probably_damaging(0.998) TCGA-64-5779-01 4 134073219 134073219 C G PCDH10 Missense_Mutation p.R642G 0.39 deleterious(0) probably_damaging(0.999) TCGA-64-5779-01 4 134084244 134084244 C A PCDH10 Silent p.R970R 0.42 TCGA-64-5779-01 4 134084245 134084245 A G PCDH10 Missense_Mutation p.S971G 0.43 tolerated(0.1) probably_damaging(0.977) TCGA-64-5779-01 4 155312364 155312364 C G DCHS2 Missense_Mutation p.C29S 0.46 tolerated_low_confidence(0.3) benign(0.001) TCGA-64-5779-01 4 169201532 169201532 T A DDX60 Missense_Mutation p.L644F 0.37 deleterious(0) probably_damaging(0.962) TCGA-64-5779-01 4 169213030 169213030 C A DDX60 Nonsense_Mutation p.E304* 0.38 TCGA-64-5779-01 4 177608442 177608442 G A VEGFC Silent p.P348P 0.44 TCGA-64-5779-01 4 183814239 183814239 T A DCTD Missense_Mutation p.S146C 0.43 deleterious(0) possibly_damaging(0.632) TCGA-64-5779-01 4 31144138 31144138 T A PCDH7 Silent p.T1145T 0.35 TCGA-64-5779-01 4 57220956 57220956 C A AASDH Silent p.L375L 0.38 TCGA-64-5779-01 4 57220957 57220957 A T AASDH Missense_Mutation p.L375Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-64-5779-01 4 65188411 65188411 G T TECRL Missense_Mutation p.T144N 0.13 tolerated(0.05) possibly_damaging(0.609) TCGA-64-5779-01 4 69097025 69097025 C A TMPRSS11B Silent p.G194G 0.19 TCGA-64-5779-01 4 69111384 69111384 C A TMPRSS11B 5'UTR 0.56 TCGA-64-5779-01 4 6969151 6969151 G T TBC1D14 Missense_Mutation p.K281N 0.18 deleterious(0.02) possibly_damaging(0.844) TCGA-64-5779-01 4 71346872 71346872 C A MUC7 Silent p.T137T 0.23 TCGA-64-5779-01 4 72623793 72623793 C T GC Missense_Mutation p.C285Y 0.29 deleterious(0) probably_damaging(1) TCGA-64-5779-01 4 73185608 73185608 G A ADAMTS3 Missense_Mutation p.S392F 0.48 deleterious(0) probably_damaging(0.999) TCGA-64-5779-01 4 77816878 77816878 G A SOWAHB Nonsense_Mutation p.Q709* 0.19 TCGA-64-5779-01 4 80246495 80246495 C A NAA11 Missense_Mutation p.E179D 0.38 tolerated(0.13) benign(0.005) TCGA-64-5779-01 4 80905035 80905035 C A ANTXR2 Missense_Mutation p.M392I 0.14 deleterious(0.01) possibly_damaging(0.901) TCGA-64-5779-01 4 8418235 8418235 A G ACOX3 Missense_Mutation p.V5A 0.08 tolerated_low_confidence(0.76) benign(0.001) TCGA-64-5779-01 5 129243809 129243809 G T CHSY3 Missense_Mutation p.S281I 0.23 deleterious(0) probably_damaging(0.969) TCGA-64-5779-01 5 130500892 130500892 C T HINT1 Missense_Mutation p.D3N 0.20 tolerated(0.13) benign(0.033) TCGA-64-5779-01 5 137424664 137424664 G T WNT8A Missense_Mutation p.G139V 0.17 deleterious(0) probably_damaging(0.941) TCGA-64-5779-01 5 137427065 137427065 G T WNT8A 3'UTR 0.17 TCGA-64-5779-01 5 140167627 140167627 G T PCDHA1 Missense_Mutation p.L584F 0.20 deleterious_low_confidence(0.01) benign(0.005) TCGA-64-5779-01 5 140167628 140167628 G C PCDHA1 Missense_Mutation p.V585L 0.19 tolerated_low_confidence(0.06) benign(0.178) TCGA-64-5779-01 5 140174650 140174650 C A PCDHA2 Missense_Mutation p.S34Y 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.876) TCGA-64-5779-01 5 140174651 140174651 C G PCDHA2 Silent p.S34S 0.23 TCGA-64-5779-01 5 140222651 140222651 C A PCDHA8 Missense_Mutation p.P582Q 0.17 deleterious_low_confidence(0.04) benign(0.352) TCGA-64-5779-01 5 140476117 140476117 G T PCDHB2 Silent p.A581A 0.15 TCGA-64-5779-01 5 140476118 140476118 G T PCDHB2 Missense_Mutation p.A582S 0.15 deleterious_low_confidence(0) possibly_damaging(0.714) TCGA-64-5779-01 5 140605248 140605248 G A PCDHB14 Missense_Mutation p.R724H 0.25 tolerated_low_confidence(0.12) benign(0.439) TCGA-64-5779-01 5 140718872 140718872 G T PCDHGA2 Missense_Mutation p.D112Y 0.20 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-64-5779-01 5 140725454 140725454 G T PCDHGA3 Silent p.S618S 0.17 TCGA-64-5779-01 5 141051722 141051722 C T ARAP3 Missense_Mutation p.R511H 0.11 deleterious(0.03) possibly_damaging(0.667) TCGA-64-5779-01 5 147027966 147027966 G T JAKMIP2 Silent p.T303T 0.22 TCGA-64-5779-01 5 167689182 167689182 C A TENM2 Silent p.T2564T 0.44 TCGA-64-5779-01 5 173534486 173534486 C A NSG2 Missense_Mutation p.P165Q 0.29 deleterious(0.04) possibly_damaging(0.814) TCGA-64-5779-01 5 176323160 176323160 T C HK3 Translation_Start_Site p.M1? 0.23 deleterious_low_confidence(0) possibly_damaging(0.718) TCGA-64-5779-01 5 32415138 32415138 C A ZFR Silent p.A240A 0.36 TCGA-64-5779-01 5 35035391 35035391 C T AGXT2 Missense_Mutation p.A173T 0.52 deleterious(0) probably_damaging(0.998) TCGA-64-5779-01 5 68522176 68522176 A G MRPS36 Silent p.P18P 0.15 TCGA-64-5779-01 5 82808109 82808109 G C VCAN Missense_Mutation p.R312S 0.15 deleterious(0) probably_damaging(0.995) TCGA-64-5779-01 5 82868259 82868259 C A VCAN Missense_Mutation p.Q3254K 0.14 deleterious(0) probably_damaging(1) TCGA-64-5779-01 5 840719 840719 C A ZDHHC11 Silent p.P225P 0.08 TCGA-64-5779-01 6 101248359 101248359 C A ASCC3 Missense_Mutation p.G315V 0.32 deleterious(0.02) benign(0.221) TCGA-64-5779-01 6 110620165 110620165 C A METTL24 Missense_Mutation p.R249I 0.47 deleterious(0) probably_damaging(0.951) TCGA-64-5779-01 6 116442848 116442848 G T COL10A1 Missense_Mutation p.P144H 0.35 deleterious(0.04) unknown(0) TCGA-64-5779-01 6 125404010 125404010 G T RNF217 Silent p.V265V 0.33 TCGA-64-5779-01 6 130762587 130762587 C T TMEM200A Silent p.P340P 0.42 TCGA-64-5779-01 6 143091240 143091240 C A HIVEP2 Missense_Mutation p.G1546C 0.42 deleterious(0.03) possibly_damaging(0.779) TCGA-64-5779-01 6 144844215 144844215 G T UTRN Missense_Mutation p.D1933Y 0.28 deleterious(0) probably_damaging(0.998) TCGA-64-5779-01 6 26508188 26508188 G C BTN1A1 Silent p.L290L 0.21 TCGA-64-5779-01 6 2683352 2683352 T C MYLK4 Missense_Mutation p.Y197C 0.29 tolerated(0.26) benign(0.058) TCGA-64-5779-01 6 29394566 29394566 G A OR11A1 Missense_Mutation p.L285F 0.32 deleterious(0.01) benign(0.107) TCGA-64-5779-01 6 30675940 30675940 C A MDC1 Missense_Mutation p.G806W 0.32 deleterious(0) probably_damaging(0.914) TCGA-64-5779-01 6 32261527 32261527 A G C6orf10 Missense_Mutation p.L308P 0.03 deleterious(0.03) probably_damaging(0.997) TCGA-64-5779-01 6 46555804 46555804 T C CYP39A1 Silent p.P376P 0.26 TCGA-64-5779-01 6 50016252 50016252 G T DEFB112 Missense_Mutation p.T38K 0.22 tolerated(0.17) benign(0.403) TCGA-64-5779-01 6 55113548 55113548 T A HCRTR2 Missense_Mutation p.L112Q 0.25 deleterious(0) probably_damaging(0.996) TCGA-64-5779-01 6 55145137 55145137 G T HCRTR2 Missense_Mutation p.A334S 0.22 tolerated(0.69) benign(0.005) TCGA-64-5779-01 6 56472672 56472672 C A DST Intron 0.26 TCGA-64-5779-01 6 56483840 56483840 C A DST Intron 0.36 TCGA-64-5779-01 6 56485133 56485133 C A DST Intron 0.29 TCGA-64-5779-01 6 56496092 56496092 T C DST Silent p.S816S 0.29 TCGA-64-5779-01 6 70064179 70064179 G T BAI3 Missense_Mutation p.D1172Y 0.41 deleterious(0) possibly_damaging(0.817) TCGA-64-5779-01 6 75831100 75831100 C T COL12A1 Missense_Mutation p.G2335E 0.35 probably_damaging(1) TCGA-64-5779-01 6 84574030 84574031 - T CYB5R4 Frame_Shift_Ins p.W72Lfs*10 0.37 TCGA-64-5779-01 7 100806508 100806508 C T VGF Silent p.P539P 0.46 TCGA-64-5779-01 7 103205881 103205881 T G RELN Missense_Mutation p.Q1685P 0.41 deleterious(0.01) probably_damaging(0.993) TCGA-64-5779-01 7 105909741 105909741 G A NAMPT Silent p.S155S 0.34 TCGA-64-5779-01 7 107677874 107677874 T C LAMB4 Silent p.A1546A 0.41 TCGA-64-5779-01 7 137270015 137270015 G C DGKI Missense_Mutation p.N501K 0.40 tolerated(0.09) probably_damaging(0.997) TCGA-64-5779-01 7 141750658 141750658 C A MGAM Missense_Mutation p.N933K 0.28 tolerated(0.15) benign(0.001) TCGA-64-5779-01 7 148767932 148767932 G A ZNF786 Silent p.S644S 0.45 TCGA-64-5779-01 7 19738228 19738228 C A TWISTNB Missense_Mutation p.G243V 0.31 tolerated(0.41) benign(0.008) TCGA-64-5779-01 7 2473357 2473357 G T CHST12 Missense_Mutation p.Q361H 0.39 tolerated(0.55) benign(0.006) TCGA-64-5779-01 7 27209140 27209140 G T RP1-170O19.20 Intron 0.17 TCGA-64-5779-01 7 43982358 43982358 C T UBE2D4 Intron 0.12 TCGA-64-5779-01 7 44192964 44192964 C T GCK Silent p.E49E 0.23 TCGA-64-5779-01 7 44579884 44579884 C T NPC1L1 Missense_Mutation p.E38K 0.31 deleterious(0) possibly_damaging(0.834) TCGA-64-5779-01 7 6012967 6012967 G C PMS2 3'UTR 0.29 TCGA-64-5779-01 7 6210909 6210909 C T CYTH3 Silent p.A162A 0.17 TCGA-64-5779-01 7 65548112 65548112 T A ASL Missense_Mutation p.S133T 0.29 tolerated(0.5) benign(0.002) TCGA-64-5779-01 7 81579777 81579777 C A CACNA2D1 Silent p.L1069L 0.36 TCGA-64-5779-01 8 10464888 10464888 C A RP1L1 Missense_Mutation p.E2240D 0.28 unknown(0) TCGA-64-5779-01 8 10466260 10466260 G T RP1L1 Missense_Mutation p.A1783E 0.26 unknown(0) TCGA-64-5779-01 8 105405219 105405219 C A DPYS Missense_Mutation p.R412S 0.17 deleterious(0) probably_damaging(0.998) TCGA-64-5779-01 8 105405220 105405220 C A DPYS Splice_Site p.X412_splice 0.19 TCGA-64-5779-01 8 10555161 10555161 C - C8orf74 Frame_Shift_Del p.R99Gfs*39 0.27 TCGA-64-5779-01 8 110587660 110587660 C G SYBU Missense_Mutation p.Q489H 0.19 deleterious(0) probably_damaging(1) TCGA-64-5779-01 8 11994734 11994734 G T USP17L2 Silent p.T512T 0.09 TCGA-64-5779-01 8 124748012 124748012 G T ANXA13 Missense_Mutation p.P41T 0.13 tolerated(0.12) benign(0.003) TCGA-64-5779-01 8 139149430 139149430 C A FAM135B Missense_Mutation p.R1325S 0.23 deleterious(0) probably_damaging(0.972) TCGA-64-5779-01 8 139158277 139158277 G T FAM135B Silent p.L1155L 0.26 TCGA-64-5779-01 8 144997456 144997456 G A PLEC Missense_Mutation p.A2351V 0.37 possibly_damaging(0.534) TCGA-64-5779-01 8 1626405 1626405 A T DLGAP2 Missense_Mutation p.S692C 0.26 deleterious(0.03) probably_damaging(1) TCGA-64-5779-01 8 27401287 27401287 G T EPHX2 Missense_Mutation p.V491F 0.24 deleterious(0) probably_damaging(0.987) TCGA-64-5779-01 8 3000045 3000045 G T CSMD1 Silent p.L2061L 0.17 TCGA-64-5779-01 8 3038664 3038664 A T CSMD1 Missense_Mutation p.V1898E 0.29 probably_damaging(0.996) TCGA-64-5779-01 8 32621581 32621581 C A NRG1 Silent p.T533T 0.18 TCGA-64-5779-01 8 3474274 3474274 G T CSMD1 Missense_Mutation p.P352H 0.32 possibly_damaging(0.873) TCGA-64-5779-01 8 41550261 41550261 G T ANK1 Missense_Mutation p.R1296S 0.26 tolerated(0.16) probably_damaging(0.975) TCGA-64-5779-01 8 42275403 42275403 C G SLC20A2 Missense_Mutation p.W626S 0.21 deleterious(0) probably_damaging(1) TCGA-64-5779-01 8 48775078 48775078 C A PRKDC Missense_Mutation p.E1924D 0.52 possibly_damaging(0.822) TCGA-64-5779-01 8 52321549 52321549 C A PXDNL Missense_Mutation p.D879Y 0.47 deleterious(0) benign(0.011) TCGA-64-5779-01 8 53076548 53076548 G A ST18 Silent p.H466H 0.16 TCGA-64-5779-01 8 54764487 54764487 G A RGS20 Missense_Mutation p.E10K 0.48 tolerated_low_confidence(0.07) benign(0.003) TCGA-64-5779-01 8 55539627 55539627 G A RP1 Missense_Mutation p.R1062K 0.46 tolerated(1) benign(0.005) TCGA-64-5779-01 8 57026479 57026479 C T MOS Silent p.A21A 0.16 TCGA-64-5779-01 8 67763155 67763155 G T SGK3 Silent p.V440V 0.54 TCGA-64-5779-01 8 88885456 88885456 G - DCAF4L2 Frame_Shift_Del p.F249Lfs*25 0.11 TCGA-64-5779-01 8 93003969 93003969 G T RUNX1T1 Missense_Mutation p.P308T 0.36 tolerated(0.54) benign(0.126) TCGA-64-5779-01 9 102590739 102590739 C T NR4A3 Missense_Mutation p.P150S 0.48 tolerated(0.29) possibly_damaging(0.69) TCGA-64-5779-01 9 104189769 104189769 G T ALDOB Missense_Mutation p.Q179K 0.45 deleterious(0) probably_damaging(1) TCGA-64-5779-01 9 104341538 104341538 C G GRIN3A Missense_Mutation p.R957S 0.49 deleterious(0) possibly_damaging(0.512) TCGA-64-5779-01 9 119770435 119770435 C A ASTN2 Missense_Mutation p.W458C 0.60 deleterious(0) unknown(0) TCGA-64-5779-01 9 119770436 119770436 C A ASTN2 Missense_Mutation p.W458L 0.61 tolerated(0.12) unknown(0) TCGA-64-5779-01 9 130829282 130829282 G C NAIF1 Missense_Mutation p.N33K 0.17 tolerated(0.11) probably_damaging(0.945) TCGA-64-5779-01 9 134351319 134351319 G A PRRC2B Missense_Mutation p.G1268D 0.42 tolerated(0.15) benign(0.082) TCGA-64-5779-01 9 139815544 139815544 G C TRAF2 Missense_Mutation p.E339Q 0.36 deleterious(0.02) benign(0.003) TCGA-64-5779-01 9 26861082 26861082 C A CAAP1 Missense_Mutation p.G241C 0.17 deleterious(0.02) possibly_damaging(0.891) TCGA-64-5779-01 9 32500900 32500900 C A DDX58 Missense_Mutation p.K48N 0.13 deleterious(0.03) possibly_damaging(0.478) TCGA-64-5779-01 9 35699425 35699425 G A TLN1 Nonsense_Mutation p.Q2268* 0.09 TCGA-64-5779-01 9 43626651 43626651 G T SPATA31A6 Missense_Mutation p.S679Y 0.18 deleterious(0) probably_damaging(0.909) TCGA-64-5779-01 9 74856165 74856165 C T GDA Silent p.S362S 0.31 TCGA-64-5779-01 9 95609741 95609741 C A ZNF484 Missense_Mutation p.S445I 0.29 deleterious(0.04) possibly_damaging(0.745) TCGA-64-5779-01 X 11197549 11197549 C G ARHGAP6 Silent p.G451G 0.59 TCGA-64-5779-01 X 125299259 125299259 C T DCAF12L2 Missense_Mutation p.V217M 0.65 tolerated(0.86) benign(0.184) TCGA-64-5779-01 X 13337398 13337398 G T ATXN3L Missense_Mutation p.S219Y 0.60 deleterious(0) possibly_damaging(0.781) TCGA-64-5779-01 X 136113699 136113699 A C GPR101 Silent p.S45S 0.27 TCGA-64-5779-01 X 142967514 142967514 A T UBE2NL Silent p.T104T 0.49 TCGA-64-5779-01 X 142967515 142967515 G C UBE2NL Missense_Mutation p.V105L 0.48 deleterious(0.01) possibly_damaging(0.504) TCGA-64-5779-01 X 153051458 153051458 C A IDH3G Intron 0.59 TCGA-64-5779-01 X 21900607 21900607 C T MBTPS2 Missense_Mutation p.A465V 0.53 deleterious(0) possibly_damaging(0.869) TCGA-64-5779-01 X 3238371 3238371 C A MXRA5 Silent p.P1785P 0.81 TCGA-64-5779-01 X 34961518 34961518 G T FAM47B Silent p.R190R 0.50 TCGA-64-5779-01 X 54783793 54783793 G A ITIH6 Missense_Mutation p.P905L 0.57 tolerated(0.06) benign(0.001) TCGA-64-5779-01 X 69454532 69454532 G T AWAT1 5'UTR 0.66 TCGA-64-5779-01 X 73811802 73811802 C A RLIM Missense_Mutation p.G450C 0.66 deleterious(0.05) unknown(0) TCGA-64-5779-01 X 73961445 73961445 C G KIAA2022 Missense_Mutation p.V983L 0.60 tolerated(1) benign(0.001) TCGA-64-5779-01 X 74519631 74519631 G T UPRT Silent p.L208L 0.59 TCGA-64-5779-01 X 77284872 77284872 G T ATP7A Silent p.V1014V 0.62 TCGA-64-5779-01 X 85950113 85950113 G C DACH2 Missense_Mutation p.A288P 0.47 tolerated(0.6) benign(0.001) TCGA-64-5779-01 X 96139656 96139656 T C RPA4 Missense_Mutation p.V116A 0.57 tolerated(0.17) benign(0.024) TCGA-64-5779-01 X 96167533 96167533 A C DIAPH2 Missense_Mutation p.K238N 0.31 deleterious(0) unknown(0) TCGA-64-5779-01 X 96167535 96167535 C T DIAPH2 Missense_Mutation p.A239V 0.31 deleterious(0) unknown(0) TCGA-64-5779-01 X 99551651 99551651 T A PCDH19 Missense_Mutation p.D1024V 0.59 deleterious(0.02) benign(0.082) TCGA-64-5779-01 Y 16942192 16942192 C A NLGN4Y Missense_Mutation p.S465Y 0.47 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 10 101594239 101594239 C A ABCC2 Missense_Mutation p.P1121T 0.10 deleterious(0) probably_damaging(0.997) TCGA-64-5781-01 10 102055997 102055997 C T PKD2L1 Missense_Mutation p.R413Q 0.20 tolerated(0.58) benign(0.037) TCGA-64-5781-01 10 102587471 102587471 G A PAX2 3'UTR 0.27 TCGA-64-5781-01 10 104139301 104139301 G T GBF1 Missense_Mutation p.A1556S 0.11 tolerated(0.46) benign(0.05) TCGA-64-5781-01 10 105362061 105362061 C A SH3PXD2A Missense_Mutation p.V944L 0.19 tolerated(0.12) probably_damaging(0.995) TCGA-64-5781-01 10 106074321 106074321 C T ITPRIP Missense_Mutation p.A497T 0.08 deleterious(0.02) probably_damaging(0.996) TCGA-64-5781-01 10 106074328 106074328 C A ITPRIP Silent p.V494V 0.19 TCGA-64-5781-01 10 106959779 106959779 C T SORCS3 Missense_Mutation p.R678C 0.10 deleterious(0) possibly_damaging(0.899) TCGA-64-5781-01 10 106959780 106959780 G T SORCS3 Missense_Mutation p.R678L 0.10 tolerated(0.06) benign(0.098) TCGA-64-5781-01 10 108366972 108366972 A G SORCS1 Silent p.Y1039Y 0.12 TCGA-64-5781-01 10 108923870 108923870 C A SORCS1 Nonsense_Mutation p.E139* 0.15 TCGA-64-5781-01 10 115602144 115602144 C A DCLRE1A Missense_Mutation p.V875F 0.12 deleterious(0) probably_damaging(0.962) TCGA-64-5781-01 10 118220556 118220556 A T PNLIPRP3 Missense_Mutation p.D215V 0.08 deleterious(0) probably_damaging(1) TCGA-64-5781-01 10 120353854 120353854 C A PRLHR Silent p.R301R 0.14 TCGA-64-5781-01 10 120790054 120790054 C A NANOS1 Nonsense_Mutation p.Y247* 0.26 TCGA-64-5781-01 10 123274659 123274659 T A FGFR2 Missense_Mutation p.K421I 0.17 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 10 123843657 123843657 G T TACC2 Missense_Mutation p.G548W 0.24 probably_damaging(0.982) TCGA-64-5781-01 10 133967450 133967450 G T JAKMIP3 Nonsense_Mutation p.E724* 0.15 TCGA-64-5781-01 10 135051581 135051581 C A VENTX Silent p.R55R 0.62 TCGA-64-5781-01 10 135346316 135346316 C G CYP2E1 Missense_Mutation p.L257V 0.15 deleterious(0.02) benign(0.147) TCGA-64-5781-01 10 135369516 135369516 C T SYCE1 Silent p.L188L 0.10 TCGA-64-5781-01 10 16941090 16941090 C - CUBN Frame_Shift_Del p.A2835Pfs*18 0.15 TCGA-64-5781-01 10 16955835 16955835 G A CUBN Missense_Mutation p.P2503L 0.32 tolerated(0.25) benign(0.013) TCGA-64-5781-01 10 18138603 18138603 G T MRC1 Missense_Mutation p.A387S 0.31 deleterious(0) probably_damaging(1) TCGA-64-5781-01 10 18270328 18270328 C A SLC39A12 Missense_Mutation p.P338T 0.29 deleterious(0) probably_damaging(0.996) TCGA-64-5781-01 10 18280127 18280127 T A SLC39A12 Missense_Mutation p.H439Q 0.08 tolerated(0.25) benign(0.043) TCGA-64-5781-01 10 22678165 22678165 G T SPAG6 Missense_Mutation p.R310L 0.20 deleterious(0.02) benign(0.07) TCGA-64-5781-01 10 24874021 24874021 C A ARHGAP21 Missense_Mutation p.V1733L 0.16 tolerated(0.06) benign(0.049) TCGA-64-5781-01 10 26310512 26310512 G T MYO3A Missense_Mutation p.E222D 0.27 deleterious(0) probably_damaging(1) TCGA-64-5781-01 10 26359099 26359099 G T MYO3A Missense_Mutation p.M410I 0.13 tolerated(0.16) benign(0.002) TCGA-64-5781-01 10 26457730 26457730 A T MYO3A Missense_Mutation p.R1067S 0.10 deleterious(0) probably_damaging(0.935) TCGA-64-5781-01 10 27303640 27303640 C A ANKRD26 Missense_Mutation p.A1503S 0.30 tolerated(0.16) benign(0.164) TCGA-64-5781-01 10 30611320 30611320 C A MTPAP Missense_Mutation p.D407Y 0.16 deleterious(0.01) possibly_damaging(0.832) TCGA-64-5781-01 10 32098205 32098205 C A ARHGAP12 Missense_Mutation p.S694I 0.09 deleterious(0) probably_damaging(0.997) TCGA-64-5781-01 10 38654458 38654458 G T HSD17B7P2 RNA 0.22 TCGA-64-5781-01 10 43651081 43651081 G T CSGALNACT2 Missense_Mutation p.G162C 0.12 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 10 43882617 43882617 C A HNRNPF Missense_Mutation p.G239V 0.21 deleterious(0.02) possibly_damaging(0.806) TCGA-64-5781-01 10 46962009 46962009 C T SYT15 Silent p.V409V 0.11 TCGA-64-5781-01 10 49628332 49628332 G A MAPK8 Silent p.E195E 0.12 TCGA-64-5781-01 10 55570360 55570360 C A PCDH15 Missense_Mutation p.G1487C 0.19 possibly_damaging(0.527) TCGA-64-5781-01 10 55581558 55581558 G C PCDH15 3'UTR 0.25 TCGA-64-5781-01 10 56138669 56138669 C A PCDH15 Missense_Mutation p.G64V 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-64-5781-01 10 5995118 5995118 C T IL15RA Silent p.P248P 0.16 TCGA-64-5781-01 10 60558294 60558294 C T BICC1 Missense_Mutation p.P501L 0.10 tolerated(0.27) benign(0.022) TCGA-64-5781-01 10 61835269 61835269 C A ANK3 Missense_Mutation p.Q1790H 0.18 benign(0.188) TCGA-64-5781-01 10 6261507 6261507 C G PFKFB3 Intron 0.29 TCGA-64-5781-01 10 64159473 64159473 G T ZNF365 Intron 0.16 TCGA-64-5781-01 10 68535271 68535271 T - CTNNA3 Frame_Shift_Del p.E354Kfs*6 0.13 TCGA-64-5781-01 10 75533466 75533467 - G FUT11 Frame_Shift_Ins p.D411Gfs*6 0.23 TCGA-64-5781-01 10 7621752 7621752 G T ITIH5 Missense_Mutation p.H462N 0.07 tolerated(0.27) benign(0.008) TCGA-64-5781-01 10 7659155 7659155 C A ITIH5 Missense_Mutation p.R248M 0.16 deleterious(0.02) possibly_damaging(0.69) TCGA-64-5781-01 10 79593690 79593690 C G DLG5 Missense_Mutation p.R577P 0.16 deleterious(0) probably_damaging(0.998) TCGA-64-5781-01 10 79743987 79743987 T A POLR3A Missense_Mutation p.R1104S 0.11 deleterious(0) possibly_damaging(0.775) TCGA-64-5781-01 10 8100386 8100386 G T GATA3 Silent p.T120T 0.11 TCGA-64-5781-01 10 8115980 8115980 G T GATA3 Missense_Mutation p.M443I 0.29 tolerated(0.09) probably_damaging(0.981) TCGA-64-5781-01 10 91143375 91143375 C G IFIT1B Missense_Mutation p.A102G 0.14 deleterious(0) probably_damaging(0.989) TCGA-64-5781-01 10 91476254 91476254 A G KIF20B Missense_Mutation p.I334M 0.16 deleterious(0.03) possibly_damaging(0.735) TCGA-64-5781-01 10 94389969 94389969 G A KIF11 Missense_Mutation p.D448N 0.17 deleterious(0.03) benign(0.001) TCGA-64-5781-01 10 96602702 96602702 G T CYP2C19 Missense_Mutation p.R357I 0.09 deleterious(0) probably_damaging(1) TCGA-64-5781-01 10 96748758 96748758 C T CYP2C9 Silent p.F482F 0.12 TCGA-64-5781-01 10 97174272 97174272 G A SORBS1 Silent p.L263L 0.17 TCGA-64-5781-01 11 100912825 100912825 C A PGR Nonsense_Mutation p.E833* 0.31 TCGA-64-5781-01 11 101762183 101762183 C G ANGPTL5 Missense_Mutation p.G332R 0.21 deleterious(0) probably_damaging(1) TCGA-64-5781-01 11 101762327 101762327 C A ANGPTL5 Missense_Mutation p.D284Y 0.23 deleterious(0) probably_damaging(0.989) TCGA-64-5781-01 11 102201833 102201838 AAAACA - BIRC3 In_Frame_Del p.K396_Q397del 0.18 TCGA-64-5781-01 11 102201846 102201846 C T BIRC3 Nonsense_Mutation p.Q400* 0.16 TCGA-64-5781-01 11 102573517 102573517 C G MMP27 Missense_Mutation p.D196H 0.20 deleterious(0) probably_damaging(1) TCGA-64-5781-01 11 103908012 103908012 C A DDI1 Silent p.P154P 0.18 TCGA-64-5781-01 11 105967474 105967474 C T AASDHPPT Missense_Mutation p.P257L 0.14 tolerated(0.75) benign(0) TCGA-64-5781-01 11 106558347 106558347 A G GUCY1A2 Silent p.S740S 0.17 TCGA-64-5781-01 11 106579268 106579268 C T GUCY1A2 Missense_Mutation p.R685Q 0.12 tolerated(0.1) possibly_damaging(0.894) TCGA-64-5781-01 11 107535886 107535886 C A ELMOD1 Missense_Mutation p.P323Q 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-64-5781-01 11 112065384 112065384 G T BCO2 Missense_Mutation p.W214C 0.18 deleterious(0) probably_damaging(0.987) TCGA-64-5781-01 11 113283382 113283382 G T DRD2 Missense_Mutation p.T345N 0.13 tolerated(0.25) benign(0.009) TCGA-64-5781-01 11 11373750 11373750 C G CSNK2A3 Missense_Mutation p.R306P 0.23 deleterious(0) probably_damaging(0.991) TCGA-64-5781-01 11 117257992 117257992 G T CEP164 Missense_Mutation p.A600S 0.11 tolerated(0.15) possibly_damaging(0.487) TCGA-64-5781-01 11 118210166 118210166 C G CD3D Missense_Mutation p.Q150H 0.17 deleterious(0) probably_damaging(0.986) TCGA-64-5781-01 11 118363824 118363824 G C KMT2A Missense_Mutation p.R1686P 0.23 probably_damaging(0.998) TCGA-64-5781-01 11 118771514 118771514 C A BCL9L Missense_Mutation p.G980C 0.16 possibly_damaging(0.748) TCGA-64-5781-01 11 119024758 119024758 C T ABCG4 Silent p.C87C 0.13 TCGA-64-5781-01 11 119045184 119045184 G T NLRX1 Missense_Mutation p.R291L 0.21 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 11 120732757 120732757 C T GRIK4 Silent p.F278F 0.11 TCGA-64-5781-01 11 1221953 1221953 C A MUC5AC RNA 0.12 TCGA-64-5781-01 11 123754007 123754007 C T TMEM225 Silent p.L172L 0.17 TCGA-64-5781-01 11 123814154 123814154 C A OR6T1 Missense_Mutation p.R131L 0.28 deleterious(0.01) possibly_damaging(0.578) TCGA-64-5781-01 11 124748584 124748584 C T ROBO3 Missense_Mutation p.P1142L 0.35 tolerated(0.06) possibly_damaging(0.642) TCGA-64-5781-01 11 1274101 1274101 C A MUC5B Silent p.V5036V 0.33 TCGA-64-5781-01 11 128708970 128708970 G T KCNJ1 3'UTR 0.22 TCGA-64-5781-01 11 130343102 130343102 G T ADAMTS15 Nonsense_Mutation p.E747* 0.14 TCGA-64-5781-01 11 132177605 132177605 C A NTM Missense_Mutation p.D183E 0.13 tolerated(0.35) possibly_damaging(0.852) TCGA-64-5781-01 11 132204969 132204969 G T NTM Missense_Mutation p.G333C 0.06 deleterious(0.03) benign(0.3) TCGA-64-5781-01 11 13427269 13427269 C T BTBD10 Missense_Mutation p.D315N 0.20 deleterious(0.02) possibly_damaging(0.55) TCGA-64-5781-01 11 15260577 15260577 C T INSC Silent p.L497L 0.26 TCGA-64-5781-01 11 26586719 26586719 G T MUC15 Silent p.P256P 0.16 TCGA-64-5781-01 11 2905952 2905952 G A CDKN1C Silent p.A256A 0.46 TCGA-64-5781-01 11 30926700 30926700 C A DCDC1 Silent p.S1372S 0.21 TCGA-64-5781-01 11 31816191 31816191 C A PAX6 Missense_Mutation p.E237D 0.16 tolerated(0.39) benign(0.107) TCGA-64-5781-01 11 32413565 32413565 C A WT1 Missense_Mutation p.R462L 0.22 deleterious_low_confidence(0.04) probably_damaging(0.996) TCGA-64-5781-01 11 49974659 49974659 G C OR4C13 Missense_Mutation p.E229Q 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.58) TCGA-64-5781-01 11 5020211 5020211 C T OR51L1 5'Flank 0.15 TCGA-64-5781-01 11 5021140 5021140 G C OR51L1 Missense_Mutation p.V310L 0.33 tolerated(0.71) benign(0) TCGA-64-5781-01 11 5067999 5067999 C T OR52J3 Missense_Mutation p.R82C 0.43 deleterious(0.01) benign(0.052) TCGA-64-5781-01 11 5221366 5221366 G T OR51V1 Missense_Mutation p.L189M 0.24 deleterious(0.01) possibly_damaging(0.903) TCGA-64-5781-01 11 5322666 5322666 G - OR51B4 Frame_Shift_Del p.L171Sfs*12 0.19 TCGA-64-5781-01 11 55063043 55063043 G C TRIM51HP RNA 0.16 TCGA-64-5781-01 11 55111467 55111467 C A OR4A16 Missense_Mutation p.P264H 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.512) TCGA-64-5781-01 11 55339944 55339944 T A OR4C16 Missense_Mutation p.I114N 0.11 deleterious(0) possibly_damaging(0.897) TCGA-64-5781-01 11 55418981 55418981 G T OR4S2 Missense_Mutation p.S201I 0.38 deleterious(0) possibly_damaging(0.879) TCGA-64-5781-01 11 55433423 55433423 G C OR4C6 Missense_Mutation p.V261L 0.15 tolerated_low_confidence(0.4) benign(0.17) TCGA-64-5781-01 11 55579049 55579049 G A OR5L1 Missense_Mutation p.G36E 0.18 tolerated(0.27) possibly_damaging(0.517) TCGA-64-5781-01 11 55595543 55595543 C A OR5L2 Silent p.P283P 0.16 TCGA-64-5781-01 11 55703324 55703324 G C OR5I1 Missense_Mutation p.P185A 0.16 deleterious(0.05) possibly_damaging(0.579) TCGA-64-5781-01 11 55761413 55761413 G T OR5F1 Nonsense_Mutation p.S230* 0.27 TCGA-64-5781-01 11 55890265 55890265 G C OR8H3 Missense_Mutation p.R139S 0.18 tolerated(0.12) benign(0.077) TCGA-64-5781-01 11 55944482 55944482 T A OR5J2 Nonsense_Mutation p.L130* 0.16 TCGA-64-5781-01 11 56000334 56000334 C T OR5T2 Missense_Mutation p.A110T 0.14 tolerated(0.15) benign(0.076) TCGA-64-5781-01 11 56086209 56086209 G T OR8K3 Missense_Mutation p.V143L 0.19 tolerated_low_confidence(0.14) benign(0.024) TCGA-64-5781-01 11 56185388 56185388 G A OR5R1 Silent p.F107F 0.16 TCGA-64-5781-01 11 56510984 56510984 A T OR9G4 Missense_Mutation p.S102T 0.20 tolerated(0.21) probably_damaging(0.995) TCGA-64-5781-01 11 57077513 57077513 C A TNKS1BP1 Missense_Mutation p.R891I 0.13 deleterious(0.01) probably_damaging(0.991) TCGA-64-5781-01 11 57367360 57367360 C A SERPING1 Silent p.A20A 0.16 TCGA-64-5781-01 11 57799225 57799225 G T OR6Q1 Missense_Mutation p.K267N 0.12 tolerated(0.19) benign(0.243) TCGA-64-5781-01 11 59210995 59210995 G T OR5A1 Silent p.L118L 0.21 TCGA-64-5781-01 11 59271184 59271184 A T OR4D11 Missense_Mutation p.M46L 0.18 tolerated(0.11) benign(0.001) TCGA-64-5781-01 11 59814632 59814632 G T OOSP2 3'UTR 0.14 TCGA-64-5781-01 11 6008099 6008099 G C OR52L1 Nonsense_Mutation p.S21* 0.24 TCGA-64-5781-01 11 60739346 60739346 C A CD6 Silent p.L3L 0.29 TCGA-64-5781-01 11 61254452 61254452 G C PPP1R32 Silent p.V289V 0.20 TCGA-64-5781-01 11 62287559 62287559 T A AHNAK Missense_Mutation p.H4777L 0.17 probably_damaging(0.958) TCGA-64-5781-01 11 62301100 62301100 C A AHNAK Missense_Mutation p.K263N 0.19 possibly_damaging(0.71) TCGA-64-5781-01 11 62378705 62378705 C T EML3 Silent p.L102L 0.17 TCGA-64-5781-01 11 62400518 62400518 C T GANAB Silent p.G280G 0.12 TCGA-64-5781-01 11 62402453 62402453 C T GANAB Missense_Mutation p.D134N 0.14 deleterious(0.02) probably_damaging(0.958) TCGA-64-5781-01 11 62415445 62415445 C T INTS5 Missense_Mutation p.E703K 0.17 tolerated(0.3) benign(0.233) TCGA-64-5781-01 11 62415784 62415784 C T INTS5 Missense_Mutation p.E590K 0.12 tolerated(0.7) benign(0.02) TCGA-64-5781-01 11 62434555 62434555 C T METTL12 3'UTR 0.20 TCGA-64-5781-01 11 62439292 62439292 C T C11orf83 Silent p.L25L 0.17 TCGA-64-5781-01 11 62444224 62444224 C A UBXN1 Missense_Mutation p.G302V 0.16 tolerated_low_confidence(0.21) benign(0) TCGA-64-5781-01 11 62444240 62444240 T A UBXN1 Missense_Mutation p.R297W 0.17 deleterious_low_confidence(0) possibly_damaging(0.617) TCGA-64-5781-01 11 62444306 62444306 C G UBXN1 Missense_Mutation p.E275Q 0.18 tolerated(0.08) probably_damaging(0.992) TCGA-64-5781-01 11 62444318 62444318 C A UBXN1 Nonsense_Mutation p.E271* 0.19 TCGA-64-5781-01 11 62445457 62445457 C T UBXN1 Missense_Mutation p.E142K 0.20 deleterious(0) possibly_damaging(0.898) TCGA-64-5781-01 11 62445970 62445970 C G UBXN1 Missense_Mutation p.E73Q 0.11 tolerated(0.17) benign(0.006) TCGA-64-5781-01 11 62446042 62446042 C A UBXN1 Missense_Mutation p.D49Y 0.12 deleterious(0) probably_damaging(0.982) TCGA-64-5781-01 11 62446048 62446048 C A UBXN1 Missense_Mutation p.D47Y 0.16 deleterious(0) probably_damaging(0.985) TCGA-64-5781-01 11 62446178 62446178 C T UBXN1 Missense_Mutation p.E33K 0.22 deleterious(0) probably_damaging(0.991) TCGA-64-5781-01 11 62476249 62476249 G T GNG3 Nonsense_Mutation p.E67* 0.18 TCGA-64-5781-01 11 62502894 62502894 G T TTC9C Silent p.V93V 0.16 TCGA-64-5781-01 11 62502931 62502931 G C TTC9C Missense_Mutation p.D106H 0.19 tolerated(0.13) benign(0.002) TCGA-64-5781-01 11 6263036 6263036 G T CNGA4 Intron 0.17 TCGA-64-5781-01 11 64360942 64360942 C A SLC22A12 Missense_Mutation p.A191D 0.14 deleterious(0.01) probably_damaging(0.979) TCGA-64-5781-01 11 64419599 64419599 C T NRXN2 Missense_Mutation p.G815E 0.26 deleterious(0.04) benign(0.023) TCGA-64-5781-01 11 6472661 6472661 G C TRIM3 Missense_Mutation p.S514C 0.21 deleterious(0) probably_damaging(0.95) TCGA-64-5781-01 11 64883491 64883491 G C TM7SF2 Missense_Mutation p.R408P 0.25 tolerated(0.07) probably_damaging(0.948) TCGA-64-5781-01 11 65823007 65823007 A C SF3B2 Missense_Mutation p.Q167P 0.10 tolerated_low_confidence(0.22) benign(0.068) TCGA-64-5781-01 11 66039310 66039310 G T RAB1B Silent p.V19V 0.16 TCGA-64-5781-01 11 66114503 66114503 C A B3GNT1 Nonsense_Mutation p.E172* 0.18 TCGA-64-5781-01 11 66328121 66328121 C T CTSF 3'Flank 0.15 TCGA-64-5781-01 11 66483327 66483327 G A SPTBN2 Missense_Mutation p.L95F 0.38 deleterious(0) probably_damaging(0.998) TCGA-64-5781-01 11 66605891 66605891 T A C11orf80 Missense_Mutation p.D574E 0.24 tolerated(1) benign(0.002) TCGA-64-5781-01 11 67269818 67269818 C - PITPNM1 Frame_Shift_Del p.Q121Sfs*8 0.27 TCGA-64-5781-01 11 68157355 68157355 G T LRP5 Missense_Mutation p.M473I 0.19 tolerated(0.07) possibly_damaging(0.517) TCGA-64-5781-01 11 6898719 6898719 G T OR10A4 Missense_Mutation p.V281L 0.20 tolerated(0.27) possibly_damaging(0.718) TCGA-64-5781-01 11 6953714 6953714 G T ZNF215 Nonsense_Mutation p.E71* 0.16 TCGA-64-5781-01 11 6962865 6962865 C G ZNF215 Nonsense_Mutation p.S155* 0.17 TCGA-64-5781-01 11 7847327 7847327 G A OR5P3 Missense_Mutation p.H65Y 0.17 deleterious(0) benign(0.12) TCGA-64-5781-01 11 7981665 7981665 C G NLRP10 Silent p.L498L 0.21 TCGA-64-5781-01 11 82938914 82938914 G T ANKRD42 Missense_Mutation p.A277S 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-64-5781-01 11 88583117 88583117 T C GRM5 Missense_Mutation p.M290V 0.14 tolerated(0.05) probably_damaging(0.909) TCGA-64-5781-01 11 89420534 89420534 G T FOLH1B RNA 0.10 TCGA-64-5781-01 11 89916115 89916115 C T NAALAD2 Silent p.L658L 0.10 TCGA-64-5781-01 11 92526085 92526085 G T FAT3 Silent p.V1588V 0.19 TCGA-64-5781-01 11 92715442 92715442 C A MTNR1B Silent p.P351P 0.12 TCGA-64-5781-01 11 94113286 94113286 C A GPR83 3'UTR 0.27 TCGA-64-5781-01 11 94113287 94113287 C G GPR83 3'UTR 0.27 TCGA-64-5781-01 11 94731714 94731714 G T KDM4D Missense_Mutation p.S393I 0.20 tolerated(0.23) benign(0.059) TCGA-64-5781-01 12 10133289 10133289 C T CLEC12A Missense_Mutation p.A173V 0.17 tolerated(0.06) benign(0.316) TCGA-64-5781-01 12 101587480 101587480 T C SLC5A8 Missense_Mutation p.I205M 0.20 deleterious(0) probably_damaging(0.994) TCGA-64-5781-01 12 102067343 102067343 C A MYBPC1 Missense_Mutation p.L911M 0.17 tolerated(0.34) benign(0.351) TCGA-64-5781-01 12 102071040 102071040 C A MYBPC1 Missense_Mutation p.H986N 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-64-5781-01 12 104136306 104136306 C A STAB2 Missense_Mutation p.P2002Q 0.22 deleterious(0) probably_damaging(1) TCGA-64-5781-01 12 106760300 106760300 G T POLR3B Missense_Mutation p.G38C 0.20 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 12 106895214 106895214 G C POLR3B Missense_Mutation p.R1033T 0.22 deleterious(0) probably_damaging(0.996) TCGA-64-5781-01 12 108012033 108012033 C G BTBD11 Missense_Mutation p.T777R 0.19 tolerated(0.64) benign(0.003) TCGA-64-5781-01 12 108145650 108145650 G A PRDM4 Missense_Mutation p.S223F 0.13 deleterious_low_confidence(0.01) benign(0.084) TCGA-64-5781-01 12 10871718 10871718 T C YBX3 Missense_Mutation p.K96R 0.25 tolerated(0.06) benign(0.217) TCGA-64-5781-01 12 108936916 108936916 G T SART3 Missense_Mutation p.T265K 0.18 deleterious(0) probably_damaging(0.918) TCGA-64-5781-01 12 109723261 109723261 C A FOXN4 Missense_Mutation p.C250F 0.15 deleterious(0) probably_damaging(1) TCGA-64-5781-01 12 112622024 112622024 G - HECTD4 Frame_Shift_Del p.A3437Pfs*12 0.12 TCGA-64-5781-01 12 112654893 112654893 C A HECTD4 Missense_Mutation p.G2248V 0.12 probably_damaging(0.98) TCGA-64-5781-01 12 113314541 113314541 C G RPH3A Missense_Mutation p.D347E 0.12 tolerated(0.82) benign(0.004) TCGA-64-5781-01 12 113400594 113400594 G T OAS3 Silent p.T657T 0.20 TCGA-64-5781-01 12 113495973 113495973 C A DTX1 5'UTR 0.40 TCGA-64-5781-01 12 11506880 11506880 G T PRB1 Missense_Mutation p.P53T 0.15 tolerated_low_confidence(0.23) unknown(0) TCGA-64-5781-01 12 117583913 117583914 - T FBXO21 Frame_Shift_Ins p.K623Efs*6 0.14 TCGA-64-5781-01 12 118598074 118598074 T C TAOK3 Silent p.E743E 0.17 TCGA-64-5781-01 12 121660769 121660769 C T P2RX4 Silent p.C165C 0.15 TCGA-64-5781-01 12 122723133 122723133 C A VPS33A Splice_Site p.X434_splice 0.12 TCGA-64-5781-01 12 122991382 122991382 T A RSRC2 Missense_Mutation p.K375M 0.20 deleterious(0) unknown(0) TCGA-64-5781-01 12 124826399 124826399 G A NCOR2 Silent p.L1720L 0.18 TCGA-64-5781-01 12 129566543 129566543 C A TMEM132D Nonsense_Mutation p.E562* 0.16 TCGA-64-5781-01 12 130184738 130184738 C A TMEM132D Missense_Mutation p.E195D 0.26 deleterious(0.01) benign(0.162) TCGA-64-5781-01 12 132522603 132522603 G T EP400 Nonsense_Mutation p.E2057* 0.14 TCGA-64-5781-01 12 132630208 132630208 A C NOC4L Missense_Mutation p.K115Q 0.18 tolerated(0.33) benign(0.027) TCGA-64-5781-01 12 132630210 132630210 G T NOC4L Missense_Mutation p.K115N 0.18 deleterious(0.02) benign(0.175) TCGA-64-5781-01 12 133214629 133214629 G A POLE Silent p.A1883A 0.27 TCGA-64-5781-01 12 133373168 133373168 C A GOLGA3 Missense_Mutation p.R686M 0.19 tolerated(0.08) possibly_damaging(0.712) TCGA-64-5781-01 12 15733636 15733636 C T PTPRO Silent p.Y1001Y 0.18 TCGA-64-5781-01 12 20806975 20806975 A G PDE3A Missense_Mutation p.H1007R 0.16 deleterious(0) probably_damaging(0.991) TCGA-64-5781-01 12 22040803 22040803 T G ABCC9 Missense_Mutation p.E623A 0.20 tolerated(0.13) benign(0.016) TCGA-64-5781-01 12 22811970 22811970 A C ETNK1 Missense_Mutation p.K236Q 0.20 tolerated(0.16) probably_damaging(0.986) TCGA-64-5781-01 12 25232384 25232384 A G LRMP Missense_Mutation p.I42V 0.26 tolerated_low_confidence(1) benign(0.001) TCGA-64-5781-01 12 26568288 26568288 C A ITPR2 Missense_Mutation p.K2418N 0.27 deleterious(0.03) benign(0.243) TCGA-64-5781-01 12 29673641 29673641 C - TMTC1 Frame_Shift_Del p.E600Kfs*10 0.15 TCGA-64-5781-01 12 29908738 29908738 C A TMTC1 Missense_Mutation p.G212V 0.13 deleterious(0) probably_damaging(0.997) TCGA-64-5781-01 12 30883196 30883196 G A CAPRIN2 Nonsense_Mutation p.Q361* 0.16 TCGA-64-5781-01 12 32977015 32977015 G A PKP2 Silent p.V590V 0.12 TCGA-64-5781-01 12 33031388 33031388 C A PKP2 Missense_Mutation p.R142S 0.20 deleterious(0.05) benign(0.323) TCGA-64-5781-01 12 33031389 33031389 C A PKP2 Missense_Mutation p.R142M 0.20 deleterious(0) probably_damaging(0.977) TCGA-64-5781-01 12 39705243 39705243 C T KIF21A Missense_Mutation p.D1358N 0.15 deleterious(0.01) probably_damaging(0.985) TCGA-64-5781-01 12 40689247 40689247 C T LRRK2 Missense_Mutation p.S966F 0.11 deleterious(0.02) benign(0.299) TCGA-64-5781-01 12 41323782 41323782 C A CNTN1 Silent p.I227I 0.12 TCGA-64-5781-01 12 43826486 43826486 C A ADAMTS20 Missense_Mutation p.G950V 0.15 deleterious(0.02) possibly_damaging(0.743) TCGA-64-5781-01 12 4665604 4665604 T C RAD51AP1 Silent p.T286T 0.24 TCGA-64-5781-01 12 47186734 47186734 A T SLC38A4 Splice_Site p.X40_splice 0.20 TCGA-64-5781-01 12 49170083 49170083 T A ADCY6 Missense_Mutation p.E529V 0.18 deleterious(0.03) probably_damaging(0.941) TCGA-64-5781-01 12 49360250 49360250 T A WNT10B Silent p.P266P 0.07 TCGA-64-5781-01 12 49959862 49959862 G T MCRS1 Silent p.S62S 0.17 TCGA-64-5781-01 12 50369313 50369313 C G AQP6 Missense_Mutation p.F236L 0.16 tolerated(0.06) benign(0.184) TCGA-64-5781-01 12 52845437 52845437 C A KRT6B Missense_Mutation p.Q142H 0.10 deleterious(0) benign(0.274) TCGA-64-5781-01 12 52912811 52912811 A T KRT5 Missense_Mutation p.L230Q 0.15 deleterious(0.01) possibly_damaging(0.775) TCGA-64-5781-01 12 52994868 52994868 G T KRT72 Silent p.A123A 0.20 TCGA-64-5781-01 12 53215770 53215770 C A KRT79 Missense_Mutation p.K498N 0.30 deleterious(0.03) probably_damaging(0.994) TCGA-64-5781-01 12 55421015 55421015 C G NEUROD4 Silent p.S264S 0.19 TCGA-64-5781-01 12 55421034 55421034 C A NEUROD4 Missense_Mutation p.P271T 0.20 deleterious(0.04) probably_damaging(1) TCGA-64-5781-01 12 56713716 56713716 T A PAN2 Missense_Mutation p.M964L 0.24 tolerated(0.36) benign(0.02) TCGA-64-5781-01 12 57569858 57569858 G T LRP1 Missense_Mutation p.K1320N 0.18 probably_damaging(0.997) TCGA-64-5781-01 12 57663634 57663634 C G R3HDM2 Silent p.T482T 0.21 TCGA-64-5781-01 12 57663635 57663635 G T R3HDM2 Missense_Mutation p.T482K 0.20 deleterious(0.02) benign(0.058) TCGA-64-5781-01 12 63543873 63543873 G A AVPR1A Silent p.R248R 0.13 TCGA-64-5781-01 12 63976267 63976267 G T DPY19L2 Silent p.A548A 0.23 TCGA-64-5781-01 12 70072552 70072552 G A BEST3 Silent p.I201I 0.28 TCGA-64-5781-01 12 70948995 70948995 G C PTPRB Missense_Mutation p.F1696L 0.22 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 12 72179334 72179334 G C RAB21 Missense_Mutation p.D187H 0.14 tolerated(0.06) benign(0.005) TCGA-64-5781-01 12 73056937 73056937 G C TRHDE Missense_Mutation p.E1013Q 0.21 tolerated(0.59) benign(0.038) TCGA-64-5781-01 12 75444272 75444272 A T KCNC2 Missense_Mutation p.S505T 0.21 deleterious(0.02) probably_damaging(0.995) TCGA-64-5781-01 12 75816874 75816874 G T GLIPR1L2 Intron 0.15 TCGA-64-5781-01 12 78515894 78515894 C A NAV3 Missense_Mutation p.S1308R 0.14 tolerated(0.08) probably_damaging(0.999) TCGA-64-5781-01 12 78574729 78574729 C A NAV3 Missense_Mutation p.P1844T 0.18 deleterious(0.02) benign(0.393) TCGA-64-5781-01 12 78593237 78593237 T C NAV3 Missense_Mutation p.I2192T 0.22 deleterious(0) probably_damaging(0.954) TCGA-64-5781-01 12 80626689 80626689 C A OTOGL Missense_Mutation p.T201K 0.20 tolerated(0.11) benign(0.254) TCGA-64-5781-01 12 80704502 80704502 A C OTOGL Missense_Mutation p.N1140H 0.12 tolerated(0.11) probably_damaging(0.995) TCGA-64-5781-01 12 80707360 80707360 C A OTOGL Nonsense_Mutation p.Y1176* 0.14 TCGA-64-5781-01 12 81532992 81532992 A T ACSS3 Missense_Mutation p.K243I 0.18 deleterious(0.02) benign(0.131) TCGA-64-5781-01 12 81741468 81741468 G T PPFIA2 Silent p.G692G 0.14 TCGA-64-5781-01 12 8211786 8211786 G T C3AR1 Silent p.P332P 0.11 TCGA-64-5781-01 12 85518200 85518200 G T LRRIQ1 Missense_Mutation p.A1304S 0.18 tolerated(0.7) benign(0.004) TCGA-64-5781-01 12 85546088 85546088 G T LRRIQ1 Missense_Mutation p.D1454Y 0.16 deleterious(0) probably_damaging(0.99) TCGA-64-5781-01 12 88465670 88465670 C A CEP290 Missense_Mutation p.G1915C 0.31 probably_damaging(0.982) TCGA-64-5781-01 12 9225254 9225254 G T A2M Missense_Mutation p.L1324I 0.14 tolerated(0.14) benign(0.026) TCGA-64-5781-01 12 98987861 98987861 G A SLC25A3 Silent p.G35G 0.17 TCGA-64-5781-01 13 103703647 103703647 C A SLC10A2 Missense_Mutation p.G241W 0.23 deleterious(0) probably_damaging(1) TCGA-64-5781-01 13 19751540 19751540 G T TUBA3C Missense_Mutation p.L195M 0.12 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-64-5781-01 13 28893581 28893581 G A FLT1 Silent p.L1089L 0.36 TCGA-64-5781-01 13 31221131 31221131 C G USPL1 Missense_Mutation p.A392G 0.35 deleterious(0) probably_damaging(0.951) TCGA-64-5781-01 13 38160919 38160919 T A POSTN Missense_Mutation p.R251S 0.27 tolerated(0.27) probably_damaging(0.999) TCGA-64-5781-01 13 52960290 52960290 C A THSD1 Missense_Mutation p.Q351H 0.21 tolerated(0.09) benign(0.377) TCGA-64-5781-01 13 97639466 97639466 C A OXGR1 Missense_Mutation p.C183F 0.23 deleterious(0) probably_damaging(1) TCGA-64-5781-01 13 97639828 97639828 C G OXGR1 Missense_Mutation p.M62I 0.50 tolerated(0.13) possibly_damaging(0.449) TCGA-64-5781-01 14 100182205 100182205 G T CYP46A1 Missense_Mutation p.R251L 0.11 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 14 100795129 100795129 C G SLC25A47 Missense_Mutation p.Q132E 0.13 tolerated(0.83) benign(0.004) TCGA-64-5781-01 14 102825902 102825902 C A CINP Silent p.T25T 0.14 TCGA-64-5781-01 14 105518256 105518256 T A GPR132 Missense_Mutation p.Q73L 0.19 tolerated(0.11) possibly_damaging(0.627) TCGA-64-5781-01 14 106054599 106054599 C A IGHA2 Missense_Mutation p.G45V 0.09 deleterious(0) probably_damaging(0.978) TCGA-64-5781-01 14 106091085 106091085 T A IGHG4 Missense_Mutation p.M238L 0.05 tolerated(1) benign(0) TCGA-64-5781-01 14 106622005 106622005 C A IGHV3-16 Silent p.V80V 0.10 TCGA-64-5781-01 14 106733559 106733559 G T IGHV1-24 Silent p.I7I 0.10 TCGA-64-5781-01 14 106805314 106805314 G T IGHV4-31 Silent p.S83S 0.06 TCGA-64-5781-01 14 107012956 107012956 G T IGHV3-49 Silent p.A113A 0.18 TCGA-64-5781-01 14 107012957 107012957 G T IGHV3-49 Missense_Mutation p.A113D 0.21 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-64-5781-01 14 20389047 20389047 C A OR4K5 Missense_Mutation p.F94L 0.05 tolerated(0.1) benign(0.026) TCGA-64-5781-01 14 20864809 20864809 C T TEP1 Missense_Mutation p.E544K 0.25 tolerated(0.39) benign(0.134) TCGA-64-5781-01 14 21499168 21499168 C A TPPP2 Intron 0.25 TCGA-64-5781-01 14 22236760 22236760 G C TRAV6 Missense_Mutation p.G9R 0.26 deleterious_low_confidence(0.01) unknown(0) TCGA-64-5781-01 14 22409345 22409345 C T TRAV9-2 5'UTR 0.21 TCGA-64-5781-01 14 23450581 23450581 C A AJUBA Nonsense_Mutation p.G299* 0.23 TCGA-64-5781-01 14 23856749 23856749 C G MYH6 Missense_Mutation p.E1547Q 0.19 deleterious(0) probably_damaging(1) TCGA-64-5781-01 14 24656934 24656934 C A IPO4 Missense_Mutation p.W116L 0.20 deleterious(0) probably_damaging(0.988) TCGA-64-5781-01 14 24884157 24884157 C T NYNRIN Missense_Mutation p.P1068S 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-64-5781-01 14 26918030 26918030 A G NOVA1 Missense_Mutation p.V220A 0.13 tolerated(0.1) unknown(0) TCGA-64-5781-01 14 39870665 39870665 G T FBXO33 Silent p.R371R 0.19 TCGA-64-5781-01 14 42356335 42356335 G A LRFN5 Silent p.K169K 0.07 TCGA-64-5781-01 14 44973781 44973781 G T FSCB Missense_Mutation p.Q804K 0.12 tolerated(0.53) unknown(0) TCGA-64-5781-01 14 44975604 44975604 G A FSCB Missense_Mutation p.P196L 0.17 tolerated(0.05) probably_damaging(0.959) TCGA-64-5781-01 14 45432037 45432037 G C FAM179B Missense_Mutation p.R138P 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-64-5781-01 14 47342692 47342692 G T MDGA2 Missense_Mutation p.P899H 0.09 tolerated(0.08) possibly_damaging(0.525) TCGA-64-5781-01 14 52505472 52505472 C A NID2 Silent p.P750P 0.15 TCGA-64-5781-01 14 57749878 57749878 C A AP5M1 Missense_Mutation p.T408N 0.16 tolerated(0.47) benign(0.004) TCGA-64-5781-01 14 59112625 59112625 C T DACT1 Silent p.A428A 0.13 TCGA-64-5781-01 14 59757934 59757934 G T DAAM1 Splice_Site p.X62_splice 0.36 TCGA-64-5781-01 14 62536500 62536500 G A SYT16 Missense_Mutation p.G235R 0.14 tolerated(0.12) benign(0.001) TCGA-64-5781-01 14 64518958 64518958 T C SYNE2 Missense_Mutation p.L2776P 0.17 probably_damaging(1) TCGA-64-5781-01 14 65210038 65210038 G C PLEKHG3 Missense_Mutation p.G1037R 0.20 deleterious(0) possibly_damaging(0.715) TCGA-64-5781-01 14 72939587 72939587 C A RGS6 Silent p.R182R 0.09 TCGA-64-5781-01 14 73029216 73029216 C A RGS6 3'Flank 0.21 TCGA-64-5781-01 14 74086211 74086211 G C ACOT6 Missense_Mutation p.E98Q 0.14 deleterious(0.01) probably_damaging(1) TCGA-64-5781-01 14 88792837 88792837 C T KCNK10 5'Flank 0.25 TCGA-64-5781-01 14 90650807 90650807 C A KCNK13 Nonsense_Mutation p.Y229* 0.12 TCGA-64-5781-01 14 95912351 95912351 G T SYNE3 Silent p.I509I 0.26 TCGA-64-5781-01 14 96858456 96858456 G T AK7 5'UTR 0.38 TCGA-64-5781-01 15 100331834 100331834 C T AC090825.1 5'Flank 0.49 TCGA-64-5781-01 15 22473147 22473147 C G IGHV4OR15-8 Missense_Mutation p.V42L 0.20 deleterious(0) benign(0.017) TCGA-64-5781-01 15 24921212 24921212 C A NPAP1 Silent p.V66V 0.35 TCGA-64-5781-01 15 24923342 24923342 C A NPAP1 Silent p.A776A 0.28 TCGA-64-5781-01 15 24924327 24924327 G A NPAP1 Missense_Mutation p.D1105N 0.35 tolerated_low_confidence(0.64) benign(0.008) TCGA-64-5781-01 15 25327915 25327915 G T SNORD116-16 RNA 0.33 TCGA-64-5781-01 15 33916196 33916196 T C RYR3 Missense_Mutation p.F849S 0.45 possibly_damaging(0.635) TCGA-64-5781-01 15 33925287 33925287 G A RYR3 Missense_Mutation p.G1002E 0.35 probably_damaging(1) TCGA-64-5781-01 15 33991970 33991970 G C RYR3 Silent p.R2105R 0.33 TCGA-64-5781-01 15 34115218 34115218 G C RYR3 Missense_Mutation p.E3673Q 0.45 possibly_damaging(0.737) TCGA-64-5781-01 15 35083397 35083397 C A ACTC1 Missense_Mutation p.G303V 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-64-5781-01 15 40462321 40462321 A T BUB1B Missense_Mutation p.R80W 0.39 deleterious(0) probably_damaging(1) TCGA-64-5781-01 15 40675010 40675010 G C KNSTRN 5'UTR 0.38 TCGA-64-5781-01 15 43348568 43348568 C A UBR1 Missense_Mutation p.V419F 0.52 deleterious(0) probably_damaging(0.956) TCGA-64-5781-01 15 48441490 48441490 C T MYEF2 Missense_Mutation p.R486K 0.37 deleterious(0.01) benign(0.108) TCGA-64-5781-01 15 48566838 48566838 C A SLC12A1 Missense_Mutation p.L825I 0.43 tolerated(0.16) benign(0.223) TCGA-64-5781-01 15 50534961 50534961 C T HDC Silent p.R495R 0.25 TCGA-64-5781-01 15 54306940 54306940 C G UNC13C Missense_Mutation p.Q614E 0.41 tolerated_low_confidence(1) benign(0.008) TCGA-64-5781-01 15 63063229 63063229 C G TLN2 Missense_Mutation p.L1755V 0.31 tolerated(0.69) benign(0.001) TCGA-64-5781-01 15 65682616 65682616 C G IGDCC4 Missense_Mutation p.S762T 0.28 tolerated(0.17) probably_damaging(0.964) TCGA-64-5781-01 15 66792653 66792653 G T RPL4 Missense_Mutation p.Q299K 0.33 deleterious(0.04) benign(0.009) TCGA-64-5781-01 15 69011535 69011535 C A CORO2B Missense_Mutation p.A378E 0.35 deleterious(0) probably_damaging(0.983) TCGA-64-5781-01 15 77906791 77906791 G A LINGO1 Silent p.Y486Y 0.32 TCGA-64-5781-01 15 89169735 89169735 C T AEN Missense_Mutation p.P99S 0.58 tolerated(0.26) benign(0.003) TCGA-64-5781-01 15 89866008 89866008 C G POLG Missense_Mutation p.M797I 0.49 deleterious(0.05) probably_damaging(0.938) TCGA-64-5781-01 16 14951512 14951512 G T NOMO1 Missense_Mutation p.G407V 0.12 deleterious(0.05) benign(0.265) TCGA-64-5781-01 16 15808819 15808819 C T MYH11 Silent p.T1918T 0.23 TCGA-64-5781-01 16 19873269 19873269 C T GPRC5B Missense_Mutation p.G353S 0.13 tolerated(0.07) probably_damaging(0.987) TCGA-64-5781-01 16 20352594 20352594 G T UMOD Missense_Mutation p.P466T 0.24 deleterious(0.04) possibly_damaging(0.608) TCGA-64-5781-01 16 20430619 20430619 G - ACSM5 Frame_Shift_Del p.A163Pfs*10 0.14 TCGA-64-5781-01 16 20487038 20487038 G A ACSM2A Silent p.E347E 0.16 TCGA-64-5781-01 16 20648142 20648142 G T ACSM1 Missense_Mutation p.S406R 0.20 deleterious(0.02) benign(0.229) TCGA-64-5781-01 16 21698943 21698943 C G OTOA Missense_Mutation p.D203E 0.17 tolerated(0.28) benign(0.087) TCGA-64-5781-01 16 22446019 22446019 G A RRN3P3 RNA 0.20 TCGA-64-5781-01 16 24192147 24192147 G - PRKCB Frame_Shift_Del p.G478Dfs*19 0.14 TCGA-64-5781-01 16 25255428 25255428 C A ZKSCAN2 Missense_Mutation p.K553N 0.16 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 16 28330425 28330425 G T SBK1 Missense_Mutation p.K112N 0.16 tolerated(1) benign(0.017) TCGA-64-5781-01 16 28331561 28331561 G T SBK1 Silent p.T198T 0.30 TCGA-64-5781-01 16 30977436 30977436 G T SETD1A Missense_Mutation p.R745L 0.20 benign(0.25) TCGA-64-5781-01 16 31927483 31927483 G T ZNF267 Missense_Mutation p.G638V 0.13 deleterious(0.01) possibly_damaging(0.864) TCGA-64-5781-01 16 48117862 48117862 T A ABCC12 Silent p.T1317T 0.16 TCGA-64-5781-01 16 48256510 48256510 T A ABCC11 Missense_Mutation p.E259V 0.13 deleterious(0) probably_damaging(0.99) TCGA-64-5781-01 16 4924548 4924548 G A UBN1 Missense_Mutation p.E713K 0.22 deleterious(0.03) benign(0.146) TCGA-64-5781-01 16 56374811 56374811 G T GNAO1 Silent p.T263T 0.19 TCGA-64-5781-01 16 58293790 58293790 T A CCDC113 Missense_Mutation p.N193K 0.12 deleterious(0) probably_damaging(0.992) TCGA-64-5781-01 16 61854978 61854978 C A CDH8 Missense_Mutation p.G292V 0.20 deleterious(0) probably_damaging(1) TCGA-64-5781-01 16 64984775 64984775 C T CDH11 Missense_Mutation p.V597M 0.16 deleterious(0.04) benign(0.092) TCGA-64-5781-01 16 67670753 67670753 G T CTCF Missense_Mutation p.Q666H 0.18 tolerated_low_confidence(0.12) benign(0.271) TCGA-64-5781-01 16 67899124 67899124 G C NUTF2 Missense_Mutation p.A31P 0.23 tolerated(0.29) benign(0.355) TCGA-64-5781-01 16 67942625 67942625 C T PSKH1 5'UTR 0.18 TCGA-64-5781-01 16 67943486 67943486 G T PSKH1 Silent p.V278V 0.14 TCGA-64-5781-01 16 68961558 68961558 G A TANGO6 Missense_Mutation p.E739K 0.17 deleterious(0) benign(0.257) TCGA-64-5781-01 16 69350147 69350147 G T VPS4A Missense_Mutation p.K51N 0.13 deleterious(0.05) benign(0.033) TCGA-64-5781-01 16 70154580 70154580 C G PDPR Missense_Mutation p.S62C 0.27 deleterious(0.03) possibly_damaging(0.859) TCGA-64-5781-01 16 70415690 70415690 C G ST3GAL2 Missense_Mutation p.E319Q 0.10 probably_damaging(1) TCGA-64-5781-01 16 70902577 70902577 G T HYDIN Missense_Mutation p.Q3736K 0.13 benign(0.007) TCGA-64-5781-01 16 70926292 70926292 A T HYDIN Missense_Mutation p.I3130N 0.07 benign(0.07) TCGA-64-5781-01 16 74951836 74951836 C G WDR59 Missense_Mutation p.Q319H 0.14 tolerated(0.39) benign(0.398) TCGA-64-5781-01 16 75268814 75268814 C A BCAR1 Missense_Mutation p.M707I 0.14 deleterious(0) probably_damaging(0.928) TCGA-64-5781-01 16 76389295 76389295 G T CNTNAP4 Missense_Mutation p.A68S 0.11 tolerated(0.09) benign(0.302) TCGA-64-5781-01 16 78056549 78056549 G T CLEC3A Missense_Mutation p.C18F 0.15 tolerated(0.72) benign(0.001) TCGA-64-5781-01 16 81960739 81960739 G A PLCG2 Missense_Mutation p.V824I 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-64-5781-01 16 82131939 82131939 G T HSD17B2 Missense_Mutation p.L354F 0.16 tolerated(1) benign(0.002) TCGA-64-5781-01 16 82197792 82197792 T G MPHOSPH6 Missense_Mutation p.Q20P 0.15 deleterious(0) probably_damaging(0.977) TCGA-64-5781-01 16 822938 822938 C T MSLNL Silent p.T749T 0.20 TCGA-64-5781-01 16 84203839 84203839 C T DNAAF1 Missense_Mutation p.P469S 0.15 tolerated_low_confidence(0.11) benign(0.086) TCGA-64-5781-01 16 84256462 84256462 G T KCNG4 Nonsense_Mutation p.Y307* 0.20 TCGA-64-5781-01 16 84690773 84690773 G T KLHL36 Silent p.L120L 0.27 TCGA-64-5781-01 16 85838628 85838628 G C COX4I1 Missense_Mutation p.K53N 0.23 tolerated(0.07) benign(0.358) TCGA-64-5781-01 16 88694450 88694451 - A ZC3H18 Frame_Shift_Ins p.Q799Afs*25 0.12 TCGA-64-5781-01 16 9934799 9934799 G T GRIN2A Silent p.I497I 0.20 TCGA-64-5781-01 16 9943652 9943652 A G GRIN2A Missense_Mutation p.V430A 0.10 deleterious(0.04) benign(0.041) TCGA-64-5781-01 16 9984903 9984903 G T GRIN2A Silent p.G354G 0.14 TCGA-64-5781-01 17 10404645 10404645 C A MYH1 Nonsense_Mutation p.E1174* 0.20 TCGA-64-5781-01 17 10435163 10435163 C A MYH2 Missense_Mutation p.M828I 0.22 deleterious(0.04) possibly_damaging(0.452) TCGA-64-5781-01 17 13399541 13399541 G T HS3ST3A1 Silent p.T398T 0.18 TCGA-64-5781-01 17 21825448 21825448 C T FAM27L RNA 0.21 TCGA-64-5781-01 17 26092683 26092683 G T NOS2 Missense_Mutation p.P769Q 0.21 deleterious(0) probably_damaging(1) TCGA-64-5781-01 17 26902193 26902193 C A ALDOC Missense_Mutation p.G91V 0.24 deleterious(0) probably_damaging(0.979) TCGA-64-5781-01 17 26938634 26938634 C A SGK494 Silent p.V254V 0.24 TCGA-64-5781-01 17 27233534 27233534 C A PHF12 Missense_Mutation p.R894S 0.15 deleterious(0.02) benign(0.073) TCGA-64-5781-01 17 28886707 28886707 T G TBC1D29 5'UTR 0.20 TCGA-64-5781-01 17 30986161 30986161 C T MYO1D Missense_Mutation p.E773K 0.15 tolerated(0.85) benign(0.01) TCGA-64-5781-01 17 31344625 31344625 C A ASIC2 Nonsense_Mutation p.E507* 0.10 TCGA-64-5781-01 17 32954040 32954040 C G TMEM132E Missense_Mutation p.S231W 0.12 deleterious(0.01) possibly_damaging(0.57) TCGA-64-5781-01 17 32956090 32956090 G T TMEM132E Missense_Mutation p.S312I 0.15 deleterious(0) possibly_damaging(0.754) TCGA-64-5781-01 17 33255014 33255014 T A CCT6B 3'UTR 0.12 TCGA-64-5781-01 17 33446641 33446641 C A RAD51D 5'UTR 0.12 TCGA-64-5781-01 17 34171871 34171871 G T TAF15 Missense_Mutation p.G523V 0.19 deleterious_low_confidence(0) unknown(0) TCGA-64-5781-01 17 3474934 3474934 C A SHPK Splice_Site p.X744_splice 0.33 TCGA-64-5781-01 17 3477168 3477168 C A SHPK Missense_Mutation p.C621F 0.38 deleterious(0.01) benign(0.035) TCGA-64-5781-01 17 3593445 3593445 C A P2RX5 Splice_Site p.X178_splice 0.26 TCGA-64-5781-01 17 36861986 36861986 T A MLLT6 Missense_Mutation p.V34D 0.19 deleterious(0) unknown(0) TCGA-64-5781-01 17 37575999 37575999 C - MED1 Frame_Shift_Del p.S423Tfs*8 0.29 TCGA-64-5781-01 17 37676281 37676281 A G CDK12 Silent p.E1012E 0.17 TCGA-64-5781-01 17 38910703 38910703 G A KRT25 Silent p.T149T 0.11 TCGA-64-5781-01 17 39316515 39316515 G T KRTAP4-4 Silent p.T143T 0.22 TCGA-64-5781-01 17 39394396 39394396 C T KRTAP9-8 Silent p.P31P 0.13 TCGA-64-5781-01 17 39521116 39521116 C A KRT33B Nonsense_Mutation p.E338* 0.12 TCGA-64-5781-01 17 41004452 41004452 C A AOC3 Missense_Mutation p.S364R 0.18 deleterious(0) probably_damaging(1) TCGA-64-5781-01 17 41276130 41276130 G A BRCA1 Intron 0.26 TCGA-64-5781-01 17 41352478 41352478 A T NBR1 Missense_Mutation p.Q774L 0.28 tolerated(0.17) benign(0.002) TCGA-64-5781-01 17 42992785 42992785 C A GFAP Missense_Mutation p.G24C 0.27 deleterious(0.02) probably_damaging(0.91) TCGA-64-5781-01 17 43313572 43313572 C T FMNL1 Silent p.H228H 0.20 TCGA-64-5781-01 17 43333141 43333141 G A SPATA32 Silent p.F136F 0.18 TCGA-64-5781-01 17 44110791 44110791 C A KANSL1 Missense_Mutation p.S901I 0.20 tolerated(0.11) benign(0.138) TCGA-64-5781-01 17 46607968 46607968 G T HOXB1 Missense_Mutation p.P100H 0.11 tolerated(0.17) possibly_damaging(0.503) TCGA-64-5781-01 17 47299960 47299960 C A ABI3 Silent p.S328S 0.22 TCGA-64-5781-01 17 47376118 47376118 C A ZNF652 Missense_Mutation p.R493L 0.26 deleterious(0.01) benign(0.346) TCGA-64-5781-01 17 47781515 47781515 G A SLC35B1 Missense_Mutation p.S201F 0.19 deleterious(0.01) probably_damaging(0.93) TCGA-64-5781-01 17 4851651 4851651 C A PFN1 Silent p.A13A 0.35 TCGA-64-5781-01 17 4856631 4856631 A G ENO3 Missense_Mutation p.N102S 0.30 deleterious_low_confidence(0.02) probably_damaging(0.922) TCGA-64-5781-01 17 50008472 50008472 C T CA10 Missense_Mutation p.V53M 0.15 deleterious(0.04) probably_damaging(0.997) TCGA-64-5781-01 17 51900641 51900641 C A KIF2B Missense_Mutation p.L83M 0.20 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 17 51900752 51900752 C A KIF2B Missense_Mutation p.P120T 0.19 deleterious(0.02) possibly_damaging(0.728) TCGA-64-5781-01 17 51902345 51902345 G T KIF2B Missense_Mutation p.A651S 0.16 tolerated(0.06) benign(0.002) TCGA-64-5781-01 17 54517785 54517785 G - ANKFN1 Frame_Shift_Del 0.21 TCGA-64-5781-01 17 56271329 56271329 G T EPX Missense_Mutation p.R157I 0.15 tolerated(0.11) benign(0.008) TCGA-64-5781-01 17 59147460 59147460 A T BCAS3 Intron 0.22 TCGA-64-5781-01 17 59556082 59556082 G T TBX4 Missense_Mutation p.C215F 0.19 tolerated(0.12) probably_damaging(0.996) TCGA-64-5781-01 17 60023740 60023740 C G MED13 3'UTR 0.33 TCGA-64-5781-01 17 60814126 60814126 G T MARCH10 Missense_Mutation p.S368Y 0.21 deleterious(0) probably_damaging(0.935) TCGA-64-5781-01 17 61571364 61571364 G T ACE Missense_Mutation p.R1073L 0.16 deleterious(0) probably_damaging(0.998) TCGA-64-5781-01 17 61995231 61995231 G T GH1 Silent p.P115P 0.14 TCGA-64-5781-01 17 65989093 65989093 G T C17orf58 Intron 0.15 TCGA-64-5781-01 17 6683885 6683885 A T FBXO39 Missense_Mutation p.Y233F 0.13 deleterious(0) probably_damaging(0.997) TCGA-64-5781-01 17 67149676 67149676 G A ABCA10 Missense_Mutation p.A1326V 0.17 deleterious(0.03) possibly_damaging(0.461) TCGA-64-5781-01 17 67309322 67309322 G A ABCA5 Missense_Mutation p.T73I 0.12 tolerated(0.51) benign(0.001) TCGA-64-5781-01 17 72249262 72249263 - AA TTYH2 Frame_Shift_Ins p.P435Nfs*49 0.16 TCGA-64-5781-01 17 72287239 72287239 G T DNAI2 Missense_Mutation p.V231L 0.24 tolerated(0.21) benign(0.003) TCGA-64-5781-01 17 72741407 72741407 C T RAB37 Intron 0.26 TCGA-64-5781-01 17 7317710 7317710 G T NLGN2 Missense_Mutation p.G186C 0.23 deleterious(0.02) probably_damaging(1) TCGA-64-5781-01 17 74010647 74010647 C A EVPL Missense_Mutation p.V745L 0.25 tolerated(1) benign(0.003) TCGA-64-5781-01 17 7406782 7406782 G A POLR2A Missense_Mutation p.D1003N 0.23 benign(0.396) TCGA-64-5781-01 17 74554932 74554932 C G SNHG16 RNA 0.16 TCGA-64-5781-01 17 76435278 76435278 A G DNAH17 Missense_Mutation p.I3886T 0.17 benign(0.012) TCGA-64-5781-01 17 7838353 7838353 C T CNTROB Silent p.L162L 0.17 TCGA-64-5781-01 17 79479283 79479283 G A ACTG1 Missense_Mutation p.S33F 0.18 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-64-5781-01 17 8647024 8647024 G A CCDC42 Silent p.L72L 0.35 TCGA-64-5781-01 17 9923093 9923093 C A GAS7 Splice_Site p.X102_splice 0.19 TCGA-64-5781-01 18 18534823 18534823 G C ROCK1 Silent p.A1258A 0.10 TCGA-64-5781-01 18 19762931 19762931 C T GATA6 Missense_Mutation p.P516L 0.14 deleterious(0) probably_damaging(0.998) TCGA-64-5781-01 18 21338419 21338419 G C LAMA3 Missense_Mutation p.G336A 0.14 possibly_damaging(0.899) TCGA-64-5781-01 18 25543321 25543321 C A CDH2 Missense_Mutation p.E838D 0.25 tolerated(0.08) probably_damaging(0.998) TCGA-64-5781-01 18 25570121 25570121 C A CDH2 Missense_Mutation p.G513V 0.11 deleterious(0) benign(0.382) TCGA-64-5781-01 18 25572768 25572768 T A CDH2 Missense_Mutation p.I399L 0.14 tolerated(0.2) benign(0.035) TCGA-64-5781-01 18 25573525 25573525 G T CDH2 Missense_Mutation p.A366D 0.22 deleterious(0) probably_damaging(1) TCGA-64-5781-01 18 25616534 25616534 A T CDH2 Intron 0.09 TCGA-64-5781-01 18 29122774 29122774 G C DSG2 Missense_Mutation p.V765L 0.23 tolerated(0.63) benign(0.015) TCGA-64-5781-01 18 29706687 29706687 G T RNF138 Missense_Mutation p.G198V 0.15 tolerated(0.08) benign(0.232) TCGA-64-5781-01 18 34081905 34081905 C A FHOD3 Nonsense_Mutation p.Y116* 0.21 TCGA-64-5781-01 18 34753036 34753036 C T KIAA1328 Silent p.T505T 0.12 TCGA-64-5781-01 18 46284530 46284530 G C CTIF Missense_Mutation p.M275I 0.18 tolerated_low_confidence(0.12) benign(0.001) TCGA-64-5781-01 18 59931285 59931285 A T KIAA1468 Missense_Mutation p.E805V 0.29 deleterious(0.03) benign(0.025) TCGA-64-5781-01 18 67869201 67869201 T C RTTN Missense_Mutation p.E139G 0.23 tolerated(0.07) benign(0.217) TCGA-64-5781-01 18 7015759 7015759 C A LAMA1 Missense_Mutation p.D1030Y 0.17 deleterious(0.01) possibly_damaging(0.863) TCGA-64-5781-01 18 7043261 7043261 C T LAMA1 Missense_Mutation p.E374K 0.10 deleterious(0) probably_damaging(0.998) TCGA-64-5781-01 18 70461637 70461637 G T NETO1 Missense_Mutation p.P158T 0.27 deleterious(0.03) probably_damaging(0.975) TCGA-64-5781-01 18 72247405 72247405 A G CNDP1 Missense_Mutation p.S403G 0.29 deleterious(0) probably_damaging(0.993) TCGA-64-5781-01 18 73139540 73139540 A T SMIM21 5'UTR 0.11 TCGA-64-5781-01 18 74592256 74592256 A G ZNF236 Missense_Mutation p.N389S 0.15 tolerated(0.35) benign(0.011) TCGA-64-5781-01 18 76757010 76757010 G T SALL3 Missense_Mutation p.Q1197H 0.20 deleterious(0) probably_damaging(0.998) TCGA-64-5781-01 18 909687 909687 C T ADCYAP1 3'UTR 0.26 TCGA-64-5781-01 19 10405227 10405227 G T ICAM5 Missense_Mutation p.R714L 0.60 tolerated(0.7) benign(0.017) TCGA-64-5781-01 19 10610415 10610415 C A KEAP1 Missense_Mutation p.V99L 0.53 deleterious(0.02) probably_damaging(0.999) TCGA-64-5781-01 19 10946030 10946030 C T TMED1 Splice_Site p.X62_splice 0.45 TCGA-64-5781-01 19 11224363 11224363 A G LDLR Missense_Mutation p.K504R 0.53 tolerated(0.06) benign(0.004) TCGA-64-5781-01 19 11531872 11531872 G T CCDC151 Silent p.A533A 0.33 TCGA-64-5781-01 19 12856311 12856311 G A ASNA1 Missense_Mutation p.E144K 0.46 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 19 12877045 12877045 G C HOOK2 Silent p.L461L 0.45 TCGA-64-5781-01 19 15360012 15360012 G C BRD4 Intron 0.38 TCGA-64-5781-01 19 16008282 16008282 C G CYP4F2 Missense_Mutation p.R47P 0.20 deleterious(0.01) possibly_damaging(0.524) TCGA-64-5781-01 19 16008286 16008286 G C CYP4F2 Missense_Mutation p.R46G 0.20 deleterious(0.05) benign(0.014) TCGA-64-5781-01 19 17265191 17265191 G A MYO9B Missense_Mutation p.E389K 0.27 deleterious(0) probably_damaging(0.992) TCGA-64-5781-01 19 17986864 17986864 C T SLC5A5 Missense_Mutation p.P216L 0.29 tolerated(1) benign(0.098) TCGA-64-5781-01 19 1954120 1954120 C T CSNK1G2 Intron 0.46 TCGA-64-5781-01 19 22018890 22018890 C A ZNF43 5'UTR 0.24 TCGA-64-5781-01 19 2222371 2222371 C - DOT1L Frame_Shift_Del p.A1069Pfs*31 0.33 TCGA-64-5781-01 19 22363097 22363097 C A ZNF676 Missense_Mutation p.E474D 0.38 deleterious(0.04) probably_damaging(0.971) TCGA-64-5781-01 19 22836109 22836109 G T ZNF492 Intron 0.19 TCGA-64-5781-01 19 24102335 24102335 A G ZNF726 Intron 0.44 TCGA-64-5781-01 19 31039133 31039133 C G ZNF536 Missense_Mutation p.H869Q 0.45 tolerated(0.49) benign(0.002) TCGA-64-5781-01 19 31039148 31039148 G C ZNF536 Silent p.T874T 0.46 TCGA-64-5781-01 19 31767679 31767679 G T TSHZ3 Missense_Mutation p.S1007Y 0.41 deleterious(0) possibly_damaging(0.878) TCGA-64-5781-01 19 31769600 31769600 C A TSHZ3 Missense_Mutation p.G367C 0.35 deleterious(0) probably_damaging(0.994) TCGA-64-5781-01 19 31769601 31769601 G T TSHZ3 Nonsense_Mutation p.Y366* 0.37 TCGA-64-5781-01 19 3179494 3179494 A G S1PR4 Missense_Mutation p.Q235R 0.42 tolerated(1) benign(0.007) TCGA-64-5781-01 19 33202918 33202918 G T NUDT19 3'UTR 0.38 TCGA-64-5781-01 19 35719355 35719355 C A FAM187B Nonsense_Mutation p.E77* 0.47 TCGA-64-5781-01 19 36900715 36900715 C T ZFP82 5'UTR 0.35 TCGA-64-5781-01 19 37975731 37975731 C T ZNF570 Nonsense_Mutation p.Q403* 0.41 TCGA-64-5781-01 19 38818064 38818064 C A KCNK6 3'UTR 0.40 TCGA-64-5781-01 19 38877550 38877550 G A GGN Missense_Mutation p.P118S 0.64 tolerated_low_confidence(0.15) unknown(0) TCGA-64-5781-01 19 38966066 38966066 C A RYR1 Silent p.P1423P 0.18 TCGA-64-5781-01 19 3942236 3942236 G T NMRK2 Missense_Mutation p.A220S 0.21 tolerated_low_confidence(0.17) possibly_damaging(0.739) TCGA-64-5781-01 19 40947909 40947909 G A SERTAD3 Nonsense_Mutation p.Q27* 0.37 TCGA-64-5781-01 19 41455134 41455134 C T AC092071.1 3'Flank 0.35 TCGA-64-5781-01 19 41512853 41512853 C T CYP2B6 Silent p.A176A 0.39 TCGA-64-5781-01 19 41522588 41522588 G T CYP2B6 Silent p.A444A 0.50 TCGA-64-5781-01 19 43523025 43523025 G C PSG11 Silent p.L202L 0.42 TCGA-64-5781-01 19 43762581 43762581 G A PSG9 Missense_Mutation p.P339L 0.58 tolerated(0.09) possibly_damaging(0.846) TCGA-64-5781-01 19 44515399 44515399 G T ZNF230 Missense_Mutation p.R403L 0.48 tolerated(0.29) benign(0.228) TCGA-64-5781-01 19 45183600 45183600 G T CEACAM19 Missense_Mutation p.D234Y 0.37 deleterious(0.02) benign(0.156) TCGA-64-5781-01 19 4556015 4556015 C A SEMA6B Silent p.V152V 0.27 TCGA-64-5781-01 19 45716578 45716578 G T EXOC3L2 Missense_Mutation p.L327M 0.32 tolerated(0.42) probably_damaging(1) TCGA-64-5781-01 19 45867586 45867586 T A ERCC2 Missense_Mutation p.N241I 0.52 deleterious(0) probably_damaging(0.982) TCGA-64-5781-01 19 46997168 46997168 C T PNMAL2 Missense_Mutation p.E519K 0.48 deleterious_low_confidence(0.03) unknown(0) TCGA-64-5781-01 19 47503629 47503629 A G ARHGAP35 Missense_Mutation p.N1395S 0.46 deleterious(0) probably_damaging(0.985) TCGA-64-5781-01 19 47969343 47969343 C G SLC8A2 Missense_Mutation p.E106D 0.33 tolerated(0.08) benign(0.186) TCGA-64-5781-01 19 47978650 47978650 G A KPTN 3'UTR 0.62 TCGA-64-5781-01 19 4839200 4839200 C A PLIN3 3'UTR 0.20 TCGA-64-5781-01 19 49013301 49013301 C T LMTK3 Missense_Mutation p.A143T 0.35 benign(0.159) TCGA-64-5781-01 19 49558646 49558646 C A CGB7 5'UTR 0.28 TCGA-64-5781-01 19 49657696 49657696 T C HRC Missense_Mutation p.R267G 0.50 tolerated(1) benign(0) TCGA-64-5781-01 19 49657763 49657763 T C HRC Silent p.E244E 0.50 TCGA-64-5781-01 19 51273984 51273984 C G GPR32 Missense_Mutation p.R43G 0.54 deleterious(0.02) benign(0.229) TCGA-64-5781-01 19 51381924 51381924 G T KLK2 3'UTR 0.39 TCGA-64-5781-01 19 51483572 51483572 G A KLK7 Silent p.V131V 0.44 TCGA-64-5781-01 19 51507026 51507026 G T KLK9 Nonsense_Mutation p.Y179* 0.37 TCGA-64-5781-01 19 53268921 53268921 A G ZNF600 Silent p.C696C 0.47 TCGA-64-5781-01 19 53994115 53994116 TG - ZNF813 Frame_Shift_Del p.M210Kfs*8 0.39 TCGA-64-5781-01 19 54403579 54403579 G A PRKCG Splice_Site p.X458_splice 0.36 TCGA-64-5781-01 19 54761079 54761079 A C LILRB5 5'UTR 0.38 TCGA-64-5781-01 19 54866781 54866781 A G LAIR1 3'UTR 0.39 TCGA-64-5781-01 19 55106837 55106837 C - LILRA1 Frame_Shift_Del p.S212Vfs*9 0.37 TCGA-64-5781-01 19 55450962 55450962 G T NLRP7 Silent p.R409R 0.48 TCGA-64-5781-01 19 56203177 56203236 GACCCCTGGGGGGGCCCAGCACCCATGGCTGCTGCCGTCCCCACGGCTGCCCCCACCTCG - EPN1 In_Frame_Del p.A366_P385del 0.23 TCGA-64-5781-01 19 56244283 56244283 G T NLRP9 Nonsense_Mutation p.S305* 0.37 TCGA-64-5781-01 19 56466489 56466489 G T NLRP8 Silent p.P355P 0.36 TCGA-64-5781-01 19 57335796 57335796 C A ZIM2 5'UTR 0.44 TCGA-64-5781-01 19 57640629 57640629 A T USP29 Nonsense_Mutation p.K196* 0.57 TCGA-64-5781-01 19 58018006 58018006 G A ZNF773 Silent p.R181R 0.44 TCGA-64-5781-01 19 58087211 58087211 C G ZNF416 Missense_Mutation p.D55H 0.36 deleterious(0.01) probably_damaging(0.987) TCGA-64-5781-01 19 6495419 6495419 G T TUBB4A Missense_Mutation p.A364D 0.34 deleterious_low_confidence(0) possibly_damaging(0.555) TCGA-64-5781-01 19 7543247 7543247 C A PEX11G Silent p.L148L 0.29 TCGA-64-5781-01 19 7606248 7606248 G T PNPLA6 Missense_Mutation p.M320I 0.15 deleterious(0.01) benign(0.183) TCGA-64-5781-01 19 8130964 8130964 C A FBN3 Missense_Mutation p.G2757C 0.24 deleterious(0) probably_damaging(0.992) TCGA-64-5781-01 19 852295 852295 G T ELANE 5'UTR 0.43 TCGA-64-5781-01 19 852296 852296 G T ELANE 5'UTR 0.45 TCGA-64-5781-01 19 8808127 8808127 C A ACTL9 Missense_Mutation p.G309W 0.25 deleterious(0) probably_damaging(0.998) TCGA-64-5781-01 19 9076553 9076553 G T MUC16 Silent p.P3631P 0.27 TCGA-64-5781-01 19 9082905 9082905 C A MUC16 Missense_Mutation p.M2970I 0.37 unknown(0) TCGA-64-5781-01 19 9082906 9082906 A T MUC16 Missense_Mutation p.M2970K 0.36 unknown(0) TCGA-64-5781-01 19 9088391 9088391 C A MUC16 Missense_Mutation p.D1142Y 0.35 unknown(0) TCGA-64-5781-01 19 9089293 9089293 G A MUC16 Missense_Mutation p.P841L 0.35 unknown(0) TCGA-64-5781-01 19 9921870 9921870 C A FBXL12 Missense_Mutation p.R228L 0.20 deleterious(0.01) benign(0.002) TCGA-64-5781-01 1 100155280 100155280 T A PALMD Silent p.A488A 0.18 TCGA-64-5781-01 1 10207066 10207066 G T UBE4B Nonsense_Mutation p.E837* 0.26 TCGA-64-5781-01 1 103348790 103348790 C A COL11A1 Nonsense_Mutation p.E1646* 0.18 TCGA-64-5781-01 1 103444652 103444652 A T COL11A1 Silent p.A873A 0.13 TCGA-64-5781-01 1 104297234 104297234 G A AMY1C Nonsense_Mutation p.W331* 0.10 TCGA-64-5781-01 1 108307697 108307697 C A VAV3 Splice_Site p.X307_splice 0.10 TCGA-64-5781-01 1 111059903 111059903 C A KCNA10 Missense_Mutation p.G503C 0.14 deleterious_low_confidence(0.05) benign(0.237) TCGA-64-5781-01 1 112042824 112042824 A G ADORA3 Intron 0.21 TCGA-64-5781-01 1 11264722 11264722 C A MTOR Missense_Mutation p.W1280C 0.26 deleterious(0) probably_damaging(0.997) TCGA-64-5781-01 1 115138455 115138455 C A DENND2C Nonsense_Mutation p.E775* 0.25 TCGA-64-5781-01 1 11579514 11579514 C A PTCHD2 Silent p.P664P 0.17 TCGA-64-5781-01 1 117122231 117122231 A G IGSF3 Silent p.D1059D 0.22 TCGA-64-5781-01 1 118548121 118548121 C A SPAG17 Missense_Mutation p.E1564D 0.13 tolerated(0.05) benign(0.019) TCGA-64-5781-01 1 119965140 119965140 A G HSD3B2 Missense_Mutation p.Y339C 0.21 deleterious(0) probably_damaging(1) TCGA-64-5781-01 1 12164553 12164553 C T TNFRSF8 Missense_Mutation p.S129F 0.11 deleterious(0) probably_damaging(0.983) TCGA-64-5781-01 1 1268367 1268367 G T TAS1R3 Nonsense_Mutation p.G448* 0.14 TCGA-64-5781-01 1 12887194 12887194 G T PRAMEF11 Silent p.T221T 0.14 TCGA-64-5781-01 1 12942121 12942121 C - PRAMEF4 Frame_Shift_Del p.M143Ifs*7 0.16 TCGA-64-5781-01 1 144220792 144220792 G T NBPF8 Missense_Mutation p.S3571I 0.06 probably_damaging(0.981) TCGA-64-5781-01 1 151039695 151039695 G A MLLT11 Intron 0.12 TCGA-64-5781-01 1 152082419 152082419 G C TCHH Missense_Mutation p.Q1092E 0.15 unknown(0) TCGA-64-5781-01 1 152192704 152192704 G T HRNR Missense_Mutation p.H467Q 0.17 unknown(0) TCGA-64-5781-01 1 152276300 152276300 G T FLG Missense_Mutation p.H3688N 0.13 unknown(0) TCGA-64-5781-01 1 152279701 152279701 G T FLG Nonsense_Mutation p.S2554* 0.14 TCGA-64-5781-01 1 152328896 152328896 G C FLG2 Missense_Mutation p.H456D 0.23 unknown(0) TCGA-64-5781-01 1 152382557 152382557 C T CRNN Missense_Mutation p.G334D 0.13 tolerated(1) benign(0) TCGA-64-5781-01 1 152637025 152637025 A G LCE2D 3'UTR 0.27 TCGA-64-5781-01 1 152671565 152671565 G C LCE2A Missense_Mutation p.G63A 0.17 deleterious_low_confidence(0) unknown(0) TCGA-64-5781-01 1 153043299 153043299 T C SPRR2B Missense_Mutation p.Q6R 0.23 deleterious_low_confidence(0) unknown(0) TCGA-64-5781-01 1 153924738 153924738 G A CRTC2 Silent p.N251N 0.38 TCGA-64-5781-01 1 154296832 154296832 A T AQP10 Missense_Mutation p.Q261L 0.18 tolerated(0.43) benign(0.009) TCGA-64-5781-01 1 154744567 154744567 G T KCNN3 Missense_Mutation p.N444K 0.18 tolerated(0.06) benign(0.083) TCGA-64-5781-01 1 155294114 155294114 G T RUSC1 Intron 0.24 TCGA-64-5781-01 1 156354617 156354617 G T RHBG 3'UTR 0.23 TCGA-64-5781-01 1 156642662 156642662 C A NES Missense_Mutation p.V440F 0.13 deleterious(0.01) possibly_damaging(0.546) TCGA-64-5781-01 1 157485461 157485461 G A FCRL5 3'UTR 0.22 TCGA-64-5781-01 1 157497686 157497686 C A FCRL5 Splice_Site p.X561_splice 0.19 TCGA-64-5781-01 1 15770036 15770036 G A CTRC Nonsense_Mutation p.W160* 0.19 TCGA-64-5781-01 1 158064602 158064602 G T KIRREL Missense_Mutation p.G656C 0.36 deleterious(0) possibly_damaging(0.606) TCGA-64-5781-01 1 158152753 158152753 A T CD1D Silent p.P231P 0.12 TCGA-64-5781-01 1 158261151 158261151 C G CD1C Missense_Mutation p.R97G 0.17 tolerated(0.08) benign(0.012) TCGA-64-5781-01 1 158262139 158262139 G A CD1C Missense_Mutation p.M198I 0.15 deleterious(0.01) benign(0.006) TCGA-64-5781-01 1 158326382 158326382 G T CD1E Splice_Site p.X333_splice 0.16 TCGA-64-5781-01 1 158368428 158368428 T C OR10T2 Missense_Mutation p.T277A 0.19 deleterious(0.03) possibly_damaging(0.623) TCGA-64-5781-01 1 158450496 158450496 T A OR10R2 Missense_Mutation p.F277I 0.11 tolerated(1) benign(0.016) TCGA-64-5781-01 1 158576328 158576328 C T OR10Z1 Silent p.L34L 0.16 TCGA-64-5781-01 1 158576605 158576605 T C OR10Z1 Missense_Mutation p.I126T 0.14 deleterious(0.01) probably_damaging(0.994) TCGA-64-5781-01 1 158613118 158613118 A T SPTA1 Missense_Mutation p.L1479Q 0.22 tolerated(0.07) possibly_damaging(0.85) TCGA-64-5781-01 1 158615169 158615169 G C SPTA1 Missense_Mutation p.R1335G 0.10 deleterious(0) possibly_damaging(0.508) TCGA-64-5781-01 1 158687240 158687240 A T OR6K3 Silent p.T222T 0.27 TCGA-64-5781-01 1 158687470 158687470 C A OR6K3 Missense_Mutation p.A146S 0.21 tolerated(0.16) benign(0.117) TCGA-64-5781-01 1 158736408 158736408 C T OR6N1 Missense_Mutation p.G22D 0.25 tolerated(0.56) benign(0.013) TCGA-64-5781-01 1 158813156 158813156 C A MNDA Missense_Mutation p.A118E 0.27 tolerated(0.09) benign(0.17) TCGA-64-5781-01 1 158813815 158813815 C A MNDA Missense_Mutation p.P158H 0.18 deleterious(0.04) benign(0.11) TCGA-64-5781-01 1 158815621 158815621 C A MNDA Missense_Mutation p.S272Y 0.19 tolerated(0.2) benign(0.011) TCGA-64-5781-01 1 159283942 159283942 A T OR10J3 Missense_Mutation p.C170S 0.21 deleterious(0) probably_damaging(0.998) TCGA-64-5781-01 1 160811393 160811393 C A CD244 Silent p.T120T 0.36 TCGA-64-5781-01 1 161192794 161192794 C G APOA2 Silent p.L33L 0.11 TCGA-64-5781-01 1 161479613 161479613 G A FCGR2A Nonsense_Mutation p.W123* 0.34 TCGA-64-5781-01 1 161641338 161641338 C A FCGR2B Missense_Mutation p.P97H 0.10 deleterious(0.03) probably_damaging(0.992) TCGA-64-5781-01 1 161736161 161736161 C T ATF6 Missense_Mutation p.P4L 0.23 deleterious_low_confidence(0.03) benign(0.043) TCGA-64-5781-01 1 164789339 164789339 C G PBX1 Missense_Mutation p.S343C 0.08 deleterious(0.02) possibly_damaging(0.77) TCGA-64-5781-01 1 166039586 166039586 C G FAM78B Missense_Mutation p.M226I 0.13 tolerated(0.09) benign(0.199) TCGA-64-5781-01 1 167793718 167793718 T A ADCY10 Missense_Mutation p.S1350C 0.13 tolerated(0.17) benign(0.005) TCGA-64-5781-01 1 168206008 168206008 G T SFT2D2 Missense_Mutation p.W138L 0.24 deleterious(0.01) possibly_damaging(0.903) TCGA-64-5781-01 1 169388190 169388190 C T CCDC181 Intron 0.17 TCGA-64-5781-01 1 169510946 169510946 G T F5 Missense_Mutation p.Q1128K 0.17 tolerated(0.14) benign(0.087) TCGA-64-5781-01 1 169698749 169698749 T C SELE Missense_Mutation p.S261G 0.18 tolerated(0.09) benign(0.022) TCGA-64-5781-01 1 170501310 170501310 G A GORAB Silent p.L7L 0.10 TCGA-64-5781-01 1 171560734 171560734 G T PRRC2C Missense_Mutation p.Q2734H 0.10 possibly_damaging(0.862) TCGA-64-5781-01 1 175334200 175334200 C A TNR Missense_Mutation p.V845L 0.09 tolerated(0.34) benign(0.015) TCGA-64-5781-01 1 175372489 175372489 G C TNR Missense_Mutation p.P255A 0.10 tolerated(0.39) benign(0) TCGA-64-5781-01 1 176709266 176709266 G T PAPPA2 Missense_Mutation p.R1362L 0.31 tolerated(0.13) benign(0.001) TCGA-64-5781-01 1 177929539 177929539 C A SEC16B Splice_Site p.X313_splice 0.42 TCGA-64-5781-01 1 179398751 179398751 C A AXDND1 Missense_Mutation p.N443K 0.13 deleterious(0) benign(0.01) TCGA-64-5781-01 1 179621306 179621306 T C TDRD5 Missense_Mutation p.S712P 0.15 tolerated(0.13) benign(0.001) TCGA-64-5781-01 1 179659919 179659919 A G TDRD5 Silent p.V983V 0.34 TCGA-64-5781-01 1 179981084 179981084 A G CEP350 Missense_Mutation p.T423A 0.20 benign(0.078) TCGA-64-5781-01 1 180257594 180257594 G T ACBD6 Silent p.P251P 0.09 TCGA-64-5781-01 1 181058930 181058930 G T IER5 Missense_Mutation p.G298C 0.24 deleterious(0.01) possibly_damaging(0.743) TCGA-64-5781-01 1 181620524 181620524 C T CACNA1E Silent p.L334L 0.12 TCGA-64-5781-01 1 181680202 181680202 G C CACNA1E Missense_Mutation p.A390P 0.10 deleterious(0.01) possibly_damaging(0.665) TCGA-64-5781-01 1 183895386 183895386 G T RGL1 Missense_Mutation p.R791L 0.19 deleterious(0.04) benign(0.014) TCGA-64-5781-01 1 185143897 185143897 G T SWT1 Missense_Mutation p.W206C 0.26 tolerated(0.46) benign(0) TCGA-64-5781-01 1 186084471 186084471 G T HMCN1 Missense_Mutation p.G3829V 0.13 probably_damaging(1) TCGA-64-5781-01 1 186113375 186113375 A T HMCN1 Silent p.T4665T 0.13 TCGA-64-5781-01 1 186308841 186308841 C G TPR Missense_Mutation p.E1362Q 0.11 benign(0.403) TCGA-64-5781-01 1 18661461 18661461 G C IGSF21 Missense_Mutation p.E127D 0.14 tolerated_low_confidence(0.35) probably_damaging(0.994) TCGA-64-5781-01 1 18808309 18808309 G T KLHDC7A Silent p.A278A 0.12 TCGA-64-5781-01 1 19166166 19166166 A G TAS1R2 Missense_Mutation p.L816P 0.12 deleterious(0) probably_damaging(0.994) TCGA-64-5781-01 1 192544930 192544930 C T RGS1 Missense_Mutation p.A3V 0.29 deleterious_low_confidence(0.01) benign(0.09) TCGA-64-5781-01 1 19486754 19486754 G C UBR4 Missense_Mutation p.L1810V 0.16 benign(0.001) TCGA-64-5781-01 1 19513693 19513693 G A UBR4 Silent p.L533L 0.20 TCGA-64-5781-01 1 196711029 196711029 G T CFH Missense_Mutation p.S994I 0.20 tolerated(0.27) benign(0.008) TCGA-64-5781-01 1 196881879 196881879 C G CFHR4 Nonsense_Mutation p.S335* 0.09 TCGA-64-5781-01 1 196965196 196965196 T A CFHR5 Missense_Mutation p.Y279N 0.13 deleterious(0.02) possibly_damaging(0.786) TCGA-64-5781-01 1 196967403 196967403 C T CFHR5 Silent p.N372N 0.50 TCGA-64-5781-01 1 197024886 197024886 C T F13B Missense_Mutation p.R438H 0.32 tolerated(0.77) benign(0.004) TCGA-64-5781-01 1 197024935 197024935 C A F13B Nonsense_Mutation p.E422* 0.14 TCGA-64-5781-01 1 197069979 197069979 G A ASPM Missense_Mutation p.S2801F 0.13 tolerated(0.7) benign(0.434) TCGA-64-5781-01 1 197398720 197398720 C A CRB1 Missense_Mutation p.Q940K 0.09 tolerated(0.16) benign(0.049) TCGA-64-5781-01 1 197404326 197404326 A C CRB1 Missense_Mutation p.E1111D 0.14 tolerated(0.18) benign(0.416) TCGA-64-5781-01 1 197407898 197407898 A T CRB1 Intron 0.21 TCGA-64-5781-01 1 198668713 198668713 C A PTPRC Missense_Mutation p.P107T 0.16 tolerated(0.31) benign(0.139) TCGA-64-5781-01 1 19992446 19992446 C T HTR6 Missense_Mutation p.S67L 0.31 deleterious(0) probably_damaging(1) TCGA-64-5781-01 1 201779675 201779675 G T NAV1 Missense_Mutation p.S1529I 0.50 deleterious(0) possibly_damaging(0.69) TCGA-64-5781-01 1 201869655 201869655 C A LMOD1 Silent p.R162R 0.33 TCGA-64-5781-01 1 204587709 204587709 C A LRRN2 Missense_Mutation p.G471V 0.12 tolerated(0.06) benign(0.175) TCGA-64-5781-01 1 209951493 209951493 G A TRAF3IP3 Silent p.L409L 0.12 TCGA-64-5781-01 1 209951495 209951495 T A TRAF3IP3 Missense_Mutation p.V410E 0.12 tolerated(0.3) benign(0.005) TCGA-64-5781-01 1 210267718 210267718 C A SYT14 Missense_Mutation p.P210Q 0.12 tolerated(0.25) possibly_damaging(0.823) TCGA-64-5781-01 1 210577832 210577832 G A HHAT Missense_Mutation p.E166K 0.17 tolerated(0.07) possibly_damaging(0.793) TCGA-64-5781-01 1 21071429 21071429 T A HP1BP3 Missense_Mutation p.K508M 0.16 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-64-5781-01 1 212911978 212911978 C T NSL1 Silent p.R206R 0.21 TCGA-64-5781-01 1 213134569 213134569 C A VASH2 Missense_Mutation p.A113E 0.15 tolerated(0.06) probably_damaging(0.999) TCGA-64-5781-01 1 213415049 213415049 C A RPS6KC1 Missense_Mutation p.H744N 0.43 tolerated(0.31) benign(0.017) TCGA-64-5781-01 1 215956147 215956147 C T USH2A Silent p.T3506T 0.14 TCGA-64-5781-01 1 215960131 215960131 T A USH2A Missense_Mutation p.H3423L 0.09 benign(0.018) TCGA-64-5781-01 1 216052364 216052364 G T USH2A Missense_Mutation p.T2767N 0.18 benign(0.033) TCGA-64-5781-01 1 216420490 216420490 C T USH2A Missense_Mutation p.C749Y 0.16 probably_damaging(1) TCGA-64-5781-01 1 217783678 217783678 C A GPATCH2 Silent p.G361G 0.20 TCGA-64-5781-01 1 220269552 220269552 G T IARS2 Missense_Mutation p.G125V 0.16 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 1 22078012 22078012 C A USP48 Silent p.S254S 0.14 TCGA-64-5781-01 1 22142456 22142456 C G LDLRAD2 Missense_Mutation p.R178G 0.10 tolerated(0.07) probably_damaging(0.943) TCGA-64-5781-01 1 221875811 221875811 G T DUSP10 Missense_Mutation p.N464K 0.10 tolerated(0.31) benign(0.127) TCGA-64-5781-01 1 221912792 221912792 C A DUSP10 Missense_Mutation p.A99S 0.30 tolerated_low_confidence(1) benign(0.001) TCGA-64-5781-01 1 223400986 223400986 G T SUSD4 Silent p.V337V 0.29 TCGA-64-5781-01 1 229613447 229613447 C T NUP133 Silent p.L551L 0.10 TCGA-64-5781-01 1 229738095 229738095 A T TAF5L Silent p.T273T 0.36 TCGA-64-5781-01 1 22973864 22973864 G T C1QC Missense_Mutation p.G109V 0.19 deleterious(0) probably_damaging(1) TCGA-64-5781-01 1 231473215 231473215 C G EXOC8 Missense_Mutation p.E93Q 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-64-5781-01 1 232144895 232144895 C T DISC1 3'UTR 0.30 TCGA-64-5781-01 1 232600887 232600887 T A SIPA1L2 Missense_Mutation p.K840M 0.18 deleterious(0) possibly_damaging(0.713) TCGA-64-5781-01 1 233313547 233313547 C T PCNXL2 Splice_Site p.X1091_splice 0.27 TCGA-64-5781-01 1 235915417 235915417 T C LYST Missense_Mutation p.I2505M 0.15 deleterious(0.02) benign(0.278) TCGA-64-5781-01 1 235973489 235973489 G A LYST Missense_Mutation p.T210I 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.528) TCGA-64-5781-01 1 236754225 236754225 C G HEATR1 Missense_Mutation p.M484I 0.24 tolerated(0.07) benign(0.005) TCGA-64-5781-01 1 241964543 241964543 G T WDR64 3'UTR 0.24 TCGA-64-5781-01 1 244217947 244217947 G A ZBTB18 Missense_Mutation p.E291K 0.13 deleterious(0.01) benign(0.003) TCGA-64-5781-01 1 247582054 247582054 C G NLRP3 5'UTR 0.15 TCGA-64-5781-01 1 247592911 247592911 C A NLRP3 Silent p.S727S 0.12 TCGA-64-5781-01 1 247751823 247751823 G T OR2G2 Silent p.L54L 0.12 TCGA-64-5781-01 1 247752093 247752093 C A OR2G2 Nonsense_Mutation p.C144* 0.17 TCGA-64-5781-01 1 247752523 247752523 C G OR2G2 Missense_Mutation p.L288V 0.15 tolerated(0.12) probably_damaging(0.998) TCGA-64-5781-01 1 247769067 247769067 C G OR2G3 Nonsense_Mutation p.Y60* 0.15 TCGA-64-5781-01 1 247836005 247836005 G TT OR13G1 Frame_Shift_Ins p.T114Nfs*5 0.29 TCGA-64-5781-01 1 247902020 247902020 C A OR14K1 Missense_Mutation p.T35K 0.44 tolerated(0.05) benign(0.018) TCGA-64-5781-01 1 248128964 248128964 G T OR2AK2 Missense_Mutation p.G111C 0.15 deleterious(0) probably_damaging(0.977) TCGA-64-5781-01 1 248309381 248309381 G T OR2M5 Missense_Mutation p.G311V 0.11 deleterious(0.01) possibly_damaging(0.461) TCGA-64-5781-01 1 248343360 248343360 A T OR2M2 Missense_Mutation p.T25S 0.19 tolerated(0.4) benign(0.086) TCGA-64-5781-01 1 248343446 248343446 C G OR2M2 Silent p.T53T 0.11 TCGA-64-5781-01 1 248402423 248402423 C T OR2M4 Nonsense_Mutation p.Q65* 0.11 TCGA-64-5781-01 1 248551230 248551230 T C OR2T6 Silent p.F107F 0.17 TCGA-64-5781-01 1 248569919 248569919 C A OR2T1 Silent p.L208L 0.14 TCGA-64-5781-01 1 248570181 248570181 A C OR2T1 Missense_Mutation p.T296P 0.18 deleterious(0.01) possibly_damaging(0.864) TCGA-64-5781-01 1 248685080 248685080 C A OR2G6 Missense_Mutation p.L45I 0.15 tolerated(1) benign(0) TCGA-64-5781-01 1 248737989 248737989 C T OR2T34 Missense_Mutation p.A24T 0.20 tolerated(0.56) benign(0.016) TCGA-64-5781-01 1 248789791 248789791 A T OR2T11 Silent p.T213T 0.16 TCGA-64-5781-01 1 248814155 248814155 C A OR2T27 Missense_Mutation p.D11Y 0.09 deleterious(0.02) benign(0.11) TCGA-64-5781-01 1 25229066 25229066 G C RUNX3 Missense_Mutation p.D279E 0.29 deleterious(0) benign(0.017) TCGA-64-5781-01 1 26140371 26140371 G T SEPN1 Splice_Site p.X463_splice 0.24 TCGA-64-5781-01 1 26509049 26509049 G A CNKSR1 Missense_Mutation p.E200K 0.19 deleterious(0.02) benign(0.12) TCGA-64-5781-01 1 27120928 27120928 C T PIGV Missense_Mutation p.H135Y 0.07 tolerated(1) benign(0.005) TCGA-64-5781-01 1 27432341 27432341 C A SLC9A1 Intron 0.21 TCGA-64-5781-01 1 2939307 2939307 A T ACTRT2 Missense_Mutation p.S353C 0.23 deleterious(0) probably_damaging(0.987) TCGA-64-5781-01 1 31194163 31194163 A T MATN1 Intron 0.21 TCGA-64-5781-01 1 32829695 32829695 C T TSSK3 Silent p.I215I 0.19 TCGA-64-5781-01 1 33236143 33236143 C A KIAA1522 Missense_Mutation p.P455T 0.22 tolerated(0.11) unknown(0) TCGA-64-5781-01 1 36380996 36380997 GC T AGO1 Frame_Shift_Del p.R628Gfs*153 0.29 TCGA-64-5781-01 1 38095354 38095354 C A RSPO1 5'UTR 0.27 TCGA-64-5781-01 1 40701547 40701547 G T RLF Missense_Mutation p.K391N 0.19 deleterious(0) probably_damaging(0.972) TCGA-64-5781-01 1 42047512 42047512 C A HIVEP3 Missense_Mutation p.R986L 0.21 probably_damaging(0.998) TCGA-64-5781-01 1 43637772 43637772 G A EBNA1BP2 Silent p.L61L 0.19 TCGA-64-5781-01 1 47283692 47283692 C G CYP4B1 Silent p.P421P 0.19 TCGA-64-5781-01 1 47685674 47685674 G T TAL1 Missense_Mutation p.F238L 0.14 tolerated(0.06) benign(0.444) TCGA-64-5781-01 1 4772150 4772150 G T AJAP1 Missense_Mutation p.V74F 0.09 tolerated(0.79) benign(0.007) TCGA-64-5781-01 1 52498521 52498521 C A KTI12 Nonsense_Mutation p.E305* 0.17 TCGA-64-5781-01 1 55148376 55148376 G C MROH7 Missense_Mutation p.C810S 0.22 deleterious(0.03) probably_damaging(0.983) TCGA-64-5781-01 1 55319740 55319740 C G DHCR24 Missense_Mutation p.Q396H 0.25 deleterious(0.02) benign(0.243) TCGA-64-5781-01 1 62293239 62293239 C G INADL Missense_Mutation p.S655C 0.18 tolerated(0.08) benign(0.022) TCGA-64-5781-01 1 62582973 62582973 G A INADL Intron 0.28 TCGA-64-5781-01 1 64515413 64515413 G T ROR1 Missense_Mutation p.G72C 0.17 deleterious(0) probably_damaging(1) TCGA-64-5781-01 1 67861345 67861345 C G IL12RB2 Missense_Mutation p.P721R 0.17 deleterious(0.05) possibly_damaging(0.541) TCGA-64-5781-01 1 70541879 70541879 G T LRRC7 Missense_Mutation p.L1412F 0.15 deleterious(0.02) probably_damaging(0.995) TCGA-64-5781-01 1 74701175 74701175 G T TNNI3K Intron 0.09 TCGA-64-5781-01 1 75037806 75037806 C G C1orf173 Silent p.L1196L 0.10 TCGA-64-5781-01 1 75072430 75072430 G T C1orf173 Missense_Mutation p.N448K 0.16 tolerated(0.36) benign(0.007) TCGA-64-5781-01 1 75229748 75229748 A T TYW3 Missense_Mutation p.D244V 0.07 deleterious(0.02) possibly_damaging(0.779) TCGA-64-5781-01 1 75596372 75596372 T C LHX8 5'UTR 0.21 TCGA-64-5781-01 1 76779596 76779596 A T ST6GALNAC3 Missense_Mutation p.Q42L 0.15 possibly_damaging(0.549) TCGA-64-5781-01 1 7737720 7737720 G T CAMTA1 Silent p.S947S 0.17 TCGA-64-5781-01 1 82416772 82416772 T C LPHN2 Silent p.C521C 0.10 TCGA-64-5781-01 1 82418681 82418681 G T LPHN2 Intron 0.13 TCGA-64-5781-01 1 8397904 8397904 C T SLC45A1 Silent p.L542L 0.13 TCGA-64-5781-01 1 84394841 84394841 C A TTLL7 Missense_Mutation p.A374S 0.12 tolerated(0.07) benign(0.025) TCGA-64-5781-01 1 85331308 85331308 C A LPAR3 Missense_Mutation p.G166C 0.19 deleterious(0.01) probably_damaging(1) TCGA-64-5781-01 1 86591549 86591549 C A COL24A1 Missense_Mutation p.S157I 0.31 deleterious(0.03) possibly_damaging(0.774) TCGA-64-5781-01 1 86622021 86622022 - A COL24A1 Intron 0.22 TCGA-64-5781-01 1 89655791 89655791 C T GBP4 Missense_Mutation p.R376K 0.11 tolerated(1) benign(0.005) TCGA-64-5781-01 1 897302 897302 G T KLHL17 Missense_Mutation p.G196C 0.10 deleterious(0) probably_damaging(0.993) TCGA-64-5781-01 1 91989846 91989846 G A CDC7 Missense_Mutation p.E527K 0.15 tolerated(0.45) benign(0.026) TCGA-64-5781-01 1 92554427 92554427 G C BTBD8 Missense_Mutation p.A108P 0.28 tolerated(0.48) benign(0.014) TCGA-64-5781-01 1 94341979 94341979 G A DNTTIP2 Silent p.Y504Y 0.27 TCGA-64-5781-01 1 94463473 94463473 G T ABCA4 Missense_Mutation p.H2225N 0.13 tolerated(1) benign(0.001) TCGA-64-5781-01 1 97658654 97658654 C A DPYD Missense_Mutation p.V865F 0.21 deleterious(0) probably_damaging(0.917) TCGA-64-5781-01 1 979000 979000 G A AGRN Silent p.L562L 0.17 TCGA-64-5781-01 1 98015157 98015157 C T DPYD Missense_Mutation p.D495N 0.20 deleterious(0) probably_damaging(1) TCGA-64-5781-01 20 17434420 17434420 G T PCSK2 Missense_Mutation p.A307S 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-64-5781-01 20 23433334 23433334 C - CST11 Frame_Shift_Del p.A39Qfs*2 0.27 TCGA-64-5781-01 20 29960763 29960763 C G DEFB118 Missense_Mutation p.C54W 0.24 deleterious(0) probably_damaging(0.963) TCGA-64-5781-01 20 30556125 30556125 G C XKR7 Silent p.G49G 0.20 TCGA-64-5781-01 20 30789751 30789751 C T PLAGL2 Silent p.K77K 0.16 TCGA-64-5781-01 20 3129210 3129214 CTTAC TTAA FASTKD5 Frame_Shift_Del p.C168Ffs*3 0.15 TCGA-64-5781-01 20 31292637 31292637 C A COMMD7 Missense_Mutation p.D136Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 20 31294522 31294522 C T COMMD7 Silent p.A94A 0.20 TCGA-64-5781-01 20 31601738 31601738 C A BPIFB2 Missense_Mutation p.A144D 0.20 deleterious(0.01) possibly_damaging(0.719) TCGA-64-5781-01 20 31671451 31671451 C A BPIFB4 Silent p.R150R 0.13 TCGA-64-5781-01 20 33440034 33440034 G A GGT7 Missense_Mutation p.S504L 0.21 deleterious(0) probably_damaging(0.959) TCGA-64-5781-01 20 34144838 34144838 A G ERGIC3 Missense_Mutation p.Y330C 0.08 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 20 34611601 34611601 G A CNBD2 Silent p.L445L 0.20 TCGA-64-5781-01 20 34797560 34797560 A G EPB41L1 Missense_Mutation p.S607G 0.18 tolerated(0.08) probably_damaging(0.993) TCGA-64-5781-01 20 35539642 35539642 C - SAMHD1 Frame_Shift_Del p.E417Kfs*6 0.28 TCGA-64-5781-01 20 35740727 35740727 A G MROH8 Silent p.F965F 0.16 TCGA-64-5781-01 20 39721125 39721125 C A TOP1 Missense_Mutation p.R210S 0.22 deleterious(0.03) possibly_damaging(0.6) TCGA-64-5781-01 20 42242616 42242616 G T IFT52 Missense_Mutation p.K204N 0.21 tolerated(0.12) possibly_damaging(0.689) TCGA-64-5781-01 20 42635430 42635430 A T TOX2 Missense_Mutation p.T137S 0.21 tolerated(0.69) probably_damaging(0.984) TCGA-64-5781-01 20 44596133 44596133 C T ZNF335 Missense_Mutation p.E319K 0.18 tolerated(0.06) possibly_damaging(0.796) TCGA-64-5781-01 20 44641127 44641127 C A MMP9 Silent p.S412S 0.13 TCGA-64-5781-01 20 44671910 44671910 T C SLC12A5 Silent p.D418D 0.22 TCGA-64-5781-01 20 45194872 45194872 T C SLC13A3 Missense_Mutation p.E497G 0.20 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 20 47691870 47691870 G C CSE1L Missense_Mutation p.R383P 0.21 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 20 47989936 47989936 G T KCNB1 Missense_Mutation p.P721T 0.27 tolerated_low_confidence(0.15) possibly_damaging(0.804) TCGA-64-5781-01 20 49626751 49626751 C T KCNG1 Missense_Mutation p.R42Q 0.28 deleterious(0) possibly_damaging(0.884) TCGA-64-5781-01 20 50407808 50407808 G T SALL4 Missense_Mutation p.T405N 0.17 deleterious(0) probably_damaging(0.949) TCGA-64-5781-01 20 51870390 51870390 C A TSHZ2 Missense_Mutation p.N131K 0.21 deleterious(0) possibly_damaging(0.725) TCGA-64-5781-01 20 51871070 51871070 A C TSHZ2 Missense_Mutation p.N358T 0.17 deleterious(0) benign(0.242) TCGA-64-5781-01 20 57766700 57766700 C T ZNF831 Missense_Mutation p.A209V 0.23 deleterious(0.02) benign(0.031) TCGA-64-5781-01 20 57829836 57829836 G T ZNF831 3'UTR 0.21 TCGA-64-5781-01 20 57896099 57896099 C A EDN3 Missense_Mutation p.N131K 0.20 deleterious(0.01) probably_damaging(0.909) TCGA-64-5781-01 20 58490245 58490245 C A SYCP2 Missense_Mutation p.M203I 0.13 deleterious(0) possibly_damaging(0.544) TCGA-64-5781-01 20 60419857 60419857 G T CDH4 Missense_Mutation p.R237L 0.33 deleterious(0) probably_damaging(0.991) TCGA-64-5781-01 20 6068532 6068532 T A FERMT1 Splice_Site p.X422_splice 0.19 TCGA-64-5781-01 20 60791954 60791954 G T HRH3 Missense_Mutation p.T149K 0.15 deleterious(0) probably_damaging(0.959) TCGA-64-5781-01 20 6096636 6096636 C T FERMT1 Nonsense_Mutation p.W69* 0.19 TCGA-64-5781-01 20 61938933 61938933 G T COL20A1 Missense_Mutation p.Q196H 0.20 deleterious(0.01) probably_damaging(0.961) TCGA-64-5781-01 20 62273466 62273466 C T STMN3 Missense_Mutation p.E160K 0.33 deleterious(0) benign(0.131) TCGA-64-5781-01 20 62737247 62737247 G T NPBWR2 Missense_Mutation p.P313H 0.11 deleterious(0) probably_damaging(0.975) TCGA-64-5781-01 20 9560984 9560984 C A PAK7 Missense_Mutation p.R266S 0.19 deleterious(0.01) benign(0.024) TCGA-64-5781-01 20 9560986 9560986 T A PAK7 Missense_Mutation p.R266W 0.19 deleterious(0) possibly_damaging(0.604) TCGA-64-5781-01 21 26978773 26978773 T C MRPL39 Missense_Mutation p.S90G 0.31 tolerated(0.13) benign(0.025) TCGA-64-5781-01 21 28315712 28315712 C T ADAMTS5 Silent p.L464L 0.46 TCGA-64-5781-01 21 31709507 31709507 T G KRTAP27-1 Missense_Mutation p.Q160H 0.11 deleterious(0.04) unknown(0) TCGA-64-5781-01 21 31802904 31802904 C A KRTAP13-4 Nonsense_Mutation p.S104* 0.44 TCGA-64-5781-01 21 31869266 31869266 C A KRTAP19-4 Nonsense_Mutation p.G55* 0.31 TCGA-64-5781-01 21 42778787 42778787 G A MX2 Silent p.L589L 0.12 TCGA-64-5781-01 21 42824753 42824753 C G MX1 Missense_Mutation p.S572C 0.20 tolerated(0.09) benign(0.049) TCGA-64-5781-01 21 43531672 43531672 C A UMODL1 Silent p.P780P 0.12 TCGA-64-5781-01 21 43771156 43771156 C A TFF2 5'UTR 0.38 TCGA-64-5781-01 21 45994813 45994813 G T KRTAP10-4 Missense_Mutation p.R393L 0.18 deleterious(0.02) unknown(0) TCGA-64-5781-01 21 46308663 46308663 C A ITGB2 Silent p.T675T 0.20 TCGA-64-5781-01 22 20891465 20891465 C T MED15 Missense_Mutation p.H44Y 0.29 deleterious(0.02) unknown(0) TCGA-64-5781-01 22 21348288 21348288 G C LZTR1 Missense_Mutation p.A477P 0.29 deleterious(0.01) probably_damaging(0.985) TCGA-64-5781-01 22 23524070 23524070 G T BCR Missense_Mutation p.R308L 0.23 tolerated_low_confidence(0.79) benign(0.012) TCGA-64-5781-01 22 26872994 26872994 T A HPS4 Nonsense_Mutation p.K81* 0.38 TCGA-64-5781-01 22 36556806 36556806 C T APOL3 Missense_Mutation p.G45D 0.16 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-64-5781-01 22 39760179 39760179 C A SYNGR1 Intron 0.25 TCGA-64-5781-01 22 40068257 40068257 G A CACNA1I Silent p.V1531V 0.27 TCGA-64-5781-01 22 40283562 40283562 T A ENTHD1 Missense_Mutation p.H64L 0.23 deleterious(0) probably_damaging(0.937) TCGA-64-5781-01 22 41737150 41737150 G A ZC3H7B Silent p.S399S 0.23 TCGA-64-5781-01 22 42024183 42024183 G A XRCC6 Missense_Mutation p.M48I 0.40 deleterious(0.02) possibly_damaging(0.842) TCGA-64-5781-01 22 44282278 44282278 C T PNPLA5 Missense_Mutation p.R285H 0.35 tolerated(0.13) benign(0) TCGA-64-5781-01 22 46787142 46787142 C T CELSR1 Nonsense_Mutation p.W2064* 0.29 TCGA-64-5781-01 22 47087660 47087660 A T CERK Missense_Mutation p.W381R 0.44 deleterious(0) probably_damaging(0.992) TCGA-64-5781-01 2 102626230 102626230 G T IL1R2 Missense_Mutation p.A92S 0.15 tolerated(0.07) benign(0.172) TCGA-64-5781-01 2 102849440 102849440 G T IL1RL2 Missense_Mutation p.A385S 0.10 deleterious(0) probably_damaging(1) TCGA-64-5781-01 2 106498470 106498470 G T NCK2 Nonsense_Mutation p.E305* 0.19 TCGA-64-5781-01 2 108487216 108487216 C A RGPD4 Missense_Mutation p.S919Y 0.20 deleterious(0.01) benign(0.275) TCGA-64-5781-01 2 108626831 108626831 C A SLC5A7 Silent p.P419P 0.29 TCGA-64-5781-01 2 108881755 108881755 A T SULT1C3 Missense_Mutation p.D288V 0.09 tolerated(0.33) possibly_damaging(0.74) TCGA-64-5781-01 2 113737683 113737683 G C IL36G Missense_Mutation p.L86F 0.28 deleterious(0) benign(0.253) TCGA-64-5781-01 2 114256807 114256807 C T FOXD4L1 5'UTR 0.18 TCGA-64-5781-01 2 116447425 116447425 G T DPP10 Missense_Mutation p.W172C 0.11 tolerated(0.06) possibly_damaging(0.694) TCGA-64-5781-01 2 119731947 119731947 G T MARCO Missense_Mutation p.A167S 0.23 tolerated(0.57) possibly_damaging(0.566) TCGA-64-5781-01 2 119752009 119752009 G T MARCO Missense_Mutation p.E492D 0.16 deleterious(0) unknown(0) TCGA-64-5781-01 2 121050904 121050904 A G RALB 3'UTR 0.45 TCGA-64-5781-01 2 127806096 127806096 C T BIN1 3'UTR 0.14 TCGA-64-5781-01 2 131102277 131102277 G T IMP4 Missense_Mutation p.G63V 0.29 tolerated(0.18) benign(0.04) TCGA-64-5781-01 2 132021506 132021506 C A POTEE Silent p.T826T 0.09 TCGA-64-5781-01 2 133174567 133174567 A T GPR39 5'UTR 0.13 TCGA-64-5781-01 2 133541199 133541199 C A NCKAP5 Missense_Mutation p.G1062V 0.16 tolerated(0.09) possibly_damaging(0.89) TCGA-64-5781-01 2 135711659 135711659 G A CCNT2 Missense_Mutation p.S545N 0.11 tolerated(0.08) probably_damaging(0.985) TCGA-64-5781-01 2 136598469 136598469 C T MCM6 Missense_Mutation p.G801E 0.16 tolerated(0.83) benign(0.001) TCGA-64-5781-01 2 137928425 137928425 C A THSD7B Missense_Mutation p.A547E 0.17 tolerated(0.08) possibly_damaging(0.765) TCGA-64-5781-01 2 138400070 138400070 G T THSD7B Missense_Mutation p.R1274L 0.13 deleterious(0) unknown(0) TCGA-64-5781-01 2 138400071 138400071 G T THSD7B Silent p.R1274R 0.13 TCGA-64-5781-01 2 152293374 152293374 C T RIF1 Missense_Mutation p.P410L 0.13 deleterious(0.03) possibly_damaging(0.887) TCGA-64-5781-01 2 152426643 152426643 G A NEB Silent p.D5794D 0.20 TCGA-64-5781-01 2 157183359 157183359 G A NR4A2 Missense_Mutation p.T411I 0.14 deleterious(0.02) probably_damaging(0.987) TCGA-64-5781-01 2 163059565 163059565 T C FAP Missense_Mutation p.I380V 0.16 tolerated(0.76) benign(0.057) TCGA-64-5781-01 2 165765220 165765220 A T SLC38A11 Missense_Mutation p.V286E 0.16 deleterious(0) possibly_damaging(0.58) TCGA-64-5781-01 2 165956856 165956856 C T SCN3A Missense_Mutation p.A1308T 0.11 deleterious(0) probably_damaging(0.978) TCGA-64-5781-01 2 166245431 166245431 C A SCN2A Silent p.I1705I 0.17 TCGA-64-5781-01 2 166799738 166799738 C G TTC21B Silent p.L181L 0.13 TCGA-64-5781-01 2 166854551 166854551 C G SCN1A Missense_Mutation p.K1491N 0.19 deleterious(0) possibly_damaging(0.887) TCGA-64-5781-01 2 167992503 167992503 G T XIRP2 Missense_Mutation p.D165Y 0.23 possibly_damaging(0.66) TCGA-64-5781-01 2 168101996 168101996 C T XIRP2 Missense_Mutation p.S1365L 0.11 probably_damaging(0.944) TCGA-64-5781-01 2 169781254 169781254 G T ABCB11 Silent p.R1226R 0.11 TCGA-64-5781-01 2 169939978 169939978 G - DHRS9 Frame_Shift_Del p.V152Sfs*39 0.13 TCGA-64-5781-01 2 170058337 170058337 C - LRP2 Frame_Shift_Del p.R2752Dfs*52 0.18 TCGA-64-5781-01 2 170094714 170094714 C A LRP2 Missense_Mutation p.G1465C 0.09 probably_damaging(0.992) TCGA-64-5781-01 2 171240296 171240296 A G MYO3B Missense_Mutation p.Q421R 0.14 tolerated(0.08) benign(0.049) TCGA-64-5781-01 2 17836575 17836575 G A VSNL1 Missense_Mutation p.D164N 0.23 tolerated(0.07) possibly_damaging(0.823) TCGA-64-5781-01 2 17897437 17897437 C A SMC6 Missense_Mutation p.G481C 0.19 deleterious(0) probably_damaging(1) TCGA-64-5781-01 2 179399169 179399169 C T TTN Missense_Mutation p.R34058K 0.11 TCGA-64-5781-01 2 179412653 179412653 T A TTN Missense_Mutation p.T31234S 0.12 TCGA-64-5781-01 2 179443726 179443726 G T TTN Silent p.T22677T 0.10 TCGA-64-5781-01 2 179447386 179447386 A G TTN Intron 0.50 TCGA-64-5781-01 2 179578693 179578693 C A TTN Missense_Mutation p.G8898W 0.23 TCGA-64-5781-01 2 179605401 179605401 T - TTN Frame_Shift_Del p.S4187Vfs*5 0.26 TCGA-64-5781-01 2 179610641 179610642 AG T TTN Intron 0.16 TCGA-64-5781-01 2 179622489 179622489 C A TTN Silent p.A3486A 0.19 TCGA-64-5781-01 2 18112229 18112229 C T KCNS3 5'UTR 0.19 TCGA-64-5781-01 2 183129074 183129074 C A PDE1A Nonsense_Mutation p.E57* 0.23 TCGA-64-5781-01 2 183582905 183582905 G T DNAJC10 Missense_Mutation p.G31V 0.13 tolerated(0.51) benign(0.017) TCGA-64-5781-01 2 183622484 183622484 G A DNAJC10 Silent p.Q625Q 0.22 TCGA-64-5781-01 2 185801171 185801171 G A ZNF804A Missense_Mutation p.G350S 0.19 tolerated(0.78) benign(0.142) TCGA-64-5781-01 2 187605168 187605168 G T FAM171B Missense_Mutation p.W151L 0.14 deleterious(0) probably_damaging(1) TCGA-64-5781-01 2 189876477 189876477 G T COL3A1 Missense_Mutation p.V1460F 0.14 unknown(0) TCGA-64-5781-01 2 192288625 192288625 A C MYO1B Missense_Mutation p.N1117T 0.12 deleterious(0.04) probably_damaging(0.998) TCGA-64-5781-01 2 1926489 1926489 G T MYT1L Missense_Mutation p.P351Q 0.18 tolerated_low_confidence(0.44) benign(0.005) TCGA-64-5781-01 2 197183364 197183364 G T HECW2 Silent p.A750A 0.16 TCGA-64-5781-01 2 197185132 197185132 T A HECW2 Missense_Mutation p.R306W 0.26 deleterious(0) probably_damaging(0.998) TCGA-64-5781-01 2 201758087 201758087 A T NIF3L1 Silent p.A185A 0.12 TCGA-64-5781-01 2 202245493 202245493 T A TRAK2 Nonsense_Mutation p.R840* 0.17 TCGA-64-5781-01 2 202558754 202558754 C G MPP4 5'UTR 0.19 TCGA-64-5781-01 2 20463123 20463123 T G PUM2 Missense_Mutation p.S686R 0.21 deleterious(0.03) possibly_damaging(0.568) TCGA-64-5781-01 2 206364738 206364738 G T PARD3B Nonsense_Mutation p.E993* 0.17 TCGA-64-5781-01 2 207508998 207508998 C T AC010731.4 RNA 0.21 TCGA-64-5781-01 2 207572137 207572137 A T DYTN Missense_Mutation p.L62H 0.44 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 2 211464127 211464127 C G CPS1 Missense_Mutation p.P470R 0.20 deleterious(0) probably_damaging(1) TCGA-64-5781-01 2 211513207 211513207 T C CPS1 Missense_Mutation p.L1122P 0.15 tolerated(0.21) possibly_damaging(0.898) TCGA-64-5781-01 2 212251644 212251644 G T ERBB4 Silent p.R1139R 0.19 TCGA-64-5781-01 2 21227527 21227527 C T APOB Missense_Mutation p.E3937K 0.20 benign(0.005) TCGA-64-5781-01 2 21230966 21230966 C A APOB Missense_Mutation p.G2925V 0.17 probably_damaging(0.999) TCGA-64-5781-01 2 21234459 21234459 C T APOB Missense_Mutation p.G1761S 0.21 probably_damaging(0.998) TCGA-64-5781-01 2 214204937 214204937 G T SPAG16 Missense_Mutation p.R196L 0.12 deleterious(0) possibly_damaging(0.669) TCGA-64-5781-01 2 215914396 215914396 G C ABCA12 Missense_Mutation p.T216S 0.20 tolerated(0.46) benign(0.004) TCGA-64-5781-01 2 216272915 216272915 C T FN1 Missense_Mutation p.D812N 0.22 deleterious(0.01) probably_damaging(0.993) TCGA-64-5781-01 2 217069067 217069067 C G XRCC5 Missense_Mutation p.P711R 0.19 tolerated(0.1) benign(0.021) TCGA-64-5781-01 2 219000380 219000380 T C CXCR2 Missense_Mutation p.C286R 0.15 deleterious(0) probably_damaging(0.998) TCGA-64-5781-01 2 220344787 220344788 - C SPEG Frame_Shift_Ins p.Q1757Pfs*6 0.16 TCGA-64-5781-01 2 220354469 220354469 C A SPEG Missense_Mutation p.P2910Q 0.22 probably_damaging(0.999) TCGA-64-5781-01 2 220354645 220354645 C A SPEG Missense_Mutation p.L2969M 0.33 possibly_damaging(0.863) TCGA-64-5781-01 2 220493218 220493218 G C SLC4A3 Missense_Mutation p.G48A 0.16 tolerated_low_confidence(0.18) benign(0.217) TCGA-64-5781-01 2 228882377 228882377 G T SPHKAP Missense_Mutation p.P1065T 0.18 tolerated(0.12) benign(0.019) TCGA-64-5781-01 2 231926996 231926996 A G PSMD1 Missense_Mutation p.N32S 0.20 deleterious(0.02) benign(0.017) TCGA-64-5781-01 2 233345460 233345460 G T ECEL1 Missense_Mutation p.H707N 0.19 tolerated(0.21) probably_damaging(0.997) TCGA-64-5781-01 2 237150088 237150088 C G ASB18 Intron 0.33 TCGA-64-5781-01 2 240981267 240981267 A T PRR21 Missense_Mutation p.L378H 0.10 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-64-5781-01 2 241078728 241078728 G T OTOS Silent p.S43S 0.17 TCGA-64-5781-01 2 241513651 241513651 G C RNPEPL1 Missense_Mutation p.E123Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 2 242077446 242077446 C A PASK Silent p.G266G 0.19 TCGA-64-5781-01 2 242079351 242079351 G T PASK Missense_Mutation p.S183R 0.14 deleterious(0.03) probably_damaging(1) TCGA-64-5781-01 2 242689675 242689675 C G D2HGDH Silent p.V321V 0.17 TCGA-64-5781-01 2 242758367 242758367 C A NEU4 Missense_Mutation p.P496H 0.21 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-64-5781-01 2 25991666 25991666 C A ASXL2 Missense_Mutation p.Q192H 0.15 tolerated(0.06) benign(0.41) TCGA-64-5781-01 2 26152180 26152180 C A KIF3C Missense_Mutation p.R761I 0.18 possibly_damaging(0.651) TCGA-64-5781-01 2 26699016 26699016 G T OTOF Missense_Mutation p.P949H 0.26 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 2 26706330 26706330 C T OTOF Silent p.K464K 0.16 TCGA-64-5781-01 2 28816594 28816594 C A PLB1 Missense_Mutation p.T765N 0.17 tolerated(0.55) benign(0.02) TCGA-64-5781-01 2 29416528 29416528 G T ALK Missense_Mutation p.H1475Q 0.25 deleterious(0.02) possibly_damaging(0.765) TCGA-64-5781-01 2 29450489 29450489 C A ALK Silent p.G955G 0.17 TCGA-64-5781-01 2 29917834 29917834 A T ALK Silent p.P278P 0.20 TCGA-64-5781-01 2 31599964 31599964 T G XDH Missense_Mutation p.N461T 0.14 deleterious(0.05) benign(0.04) TCGA-64-5781-01 2 33500076 33500076 C A LTBP1 Missense_Mutation p.R930S 0.18 deleterious(0.02) probably_damaging(0.971) TCGA-64-5781-01 2 37280682 37280682 T A HEATR5B Missense_Mutation p.Q823L 0.23 deleterious(0) benign(0.061) TCGA-64-5781-01 2 37280747 37280747 T G HEATR5B Missense_Mutation p.L801F 0.20 deleterious(0.04) benign(0.162) TCGA-64-5781-01 2 39944445 39944445 G T TMEM178A 3'UTR 0.19 TCGA-64-5781-01 2 40397428 40397428 G T SLC8A1 Silent p.T677T 0.18 TCGA-64-5781-01 2 40656313 40656313 G T SLC8A1 Missense_Mutation p.R370S 0.20 deleterious(0) probably_damaging(0.995) TCGA-64-5781-01 2 40656998 40656998 G C SLC8A1 Silent p.A141A 0.12 TCGA-64-5781-01 2 46378245 46378245 G A PRKCE Silent p.E599E 0.18 TCGA-64-5781-01 2 49190937 49190937 C T FSHR Silent p.V341V 0.12 TCGA-64-5781-01 2 50765423 50765423 C A NRXN1 Missense_Mutation p.G744V 0.15 deleterious(0.01) possibly_damaging(0.799) TCGA-64-5781-01 2 60689034 60689034 G A BCL11A Missense_Mutation p.P338L 0.11 deleterious(0) probably_damaging(0.996) TCGA-64-5781-01 2 60689035 60689035 G A BCL11A Missense_Mutation p.P338S 0.11 deleterious(0.01) probably_damaging(0.993) TCGA-64-5781-01 2 68607577 68607577 A T PLEK Missense_Mutation p.T54S 0.09 tolerated(0.34) benign(0.001) TCGA-64-5781-01 2 69046344 69046344 C A ARHGAP25 Missense_Mutation p.P365T 0.23 tolerated(0.07) benign(0.169) TCGA-64-5781-01 2 7030450 7030450 C A RSAD2 Missense_Mutation p.N294K 0.18 deleterious(0) probably_damaging(0.99) TCGA-64-5781-01 2 74764011 74764011 A T LOXL3 Missense_Mutation p.V246E 0.12 deleterious(0) probably_damaging(0.987) TCGA-64-5781-01 2 74783136 74783136 C T DOK1 Silent p.A190A 0.09 TCGA-64-5781-01 2 77746810 77746810 C A LRRTM4 Missense_Mutation p.G62V 0.12 deleterious(0.04) probably_damaging(0.934) TCGA-64-5781-01 2 79348047 79348047 C A REG1A Missense_Mutation p.S20R 0.12 tolerated(0.09) benign(0.307) TCGA-64-5781-01 2 79385498 79385498 C G REG3A Missense_Mutation p.G96A 0.18 tolerated(0.51) benign(0.001) TCGA-64-5781-01 2 80875022 80875022 T - CTNNA2 3'UTR 0.20 TCGA-64-5781-01 2 85276557 85276557 G A KCMF1 Missense_Mutation p.A224T 0.10 tolerated(0.42) benign(0.121) TCGA-64-5781-01 2 8891728 8891728 C T KIDINS220 Missense_Mutation p.E1020K 0.21 deleterious(0) probably_damaging(0.998) TCGA-64-5781-01 2 89037542 89037542 G C RPIA Missense_Mutation p.D263H 0.26 deleterious(0.01) possibly_damaging(0.852) TCGA-64-5781-01 2 89953099 89953099 C T IGKV1D-33 Missense_Mutation p.S32F 0.11 tolerated(0.11) benign(0.097) TCGA-64-5781-01 2 96795703 96795703 C A ASTL Missense_Mutation p.R245L 0.25 tolerated(0.11) possibly_damaging(0.454) TCGA-64-5781-01 2 99013598 99013598 G A CNGA3 Silent p.Q655Q 0.21 TCGA-64-5781-01 3 10442757 10442757 G T ATP2B2 Missense_Mutation p.L221I 0.25 tolerated(0.19) probably_damaging(0.997) TCGA-64-5781-01 3 111697944 111697944 G C ABHD10 Missense_Mutation p.W12C 0.25 deleterious_low_confidence(0.04) unknown(0) TCGA-64-5781-01 3 122003851 122003851 A T CASR Missense_Mutation p.Q1027L 0.21 deleterious_low_confidence(0) benign(0.219) TCGA-64-5781-01 3 124953150 124953150 C A ZNF148 Nonsense_Mutation p.E231* 0.17 TCGA-64-5781-01 3 126201071 126201071 G T UROC1 3'UTR 0.24 TCGA-64-5781-01 3 128181690 128181690 G A DNAJB8 Silent p.A133A 0.11 TCGA-64-5781-01 3 129151986 129151986 G C MBD4 Missense_Mutation p.L506V 0.16 deleterious(0) possibly_damaging(0.743) TCGA-64-5781-01 3 130305379 130305379 G C COL6A6 Missense_Mutation p.D1334H 0.10 tolerated(0.05) possibly_damaging(0.778) TCGA-64-5781-01 3 130463714 130463714 G A PIK3R4 Missense_Mutation p.R117C 0.24 deleterious(0) probably_damaging(0.982) TCGA-64-5781-01 3 131624169 131624169 G C CPNE4 Missense_Mutation p.A40G 0.11 deleterious(0.05) benign(0.013) TCGA-64-5781-01 3 133494434 133494434 C T TF Silent p.C615C 0.07 TCGA-64-5781-01 3 140178589 140178589 C A CLSTN2 Silent p.I400I 0.11 TCGA-64-5781-01 3 140401413 140401413 C A TRIM42 Silent p.R151R 0.49 TCGA-64-5781-01 3 142499758 142499758 G T TRPC1 Nonsense_Mutation p.E283* 0.06 TCGA-64-5781-01 3 142681453 142681453 C A PAQR9 Silent p.L242L 0.12 TCGA-64-5781-01 3 145914458 145914458 T C PLSCR4 Silent p.P249P 0.17 TCGA-64-5781-01 3 147114109 147114109 G T ZIC4 Missense_Mutation p.A123E 0.29 tolerated(0.08) benign(0.235) TCGA-64-5781-01 3 14905750 14905750 C A FGD5 Missense_Mutation p.P881T 0.21 deleterious(0.02) benign(0.33) TCGA-64-5781-01 3 150460046 150460046 C A SIAH2 Missense_Mutation p.G286V 0.11 deleterious(0) probably_damaging(0.985) TCGA-64-5781-01 3 151078261 151078261 G T MED12L Splice_Site p.X907_splice 0.14 TCGA-64-5781-01 3 152554428 152554428 C T P2RY1 Missense_Mutation p.A286V 0.11 tolerated(0.25) possibly_damaging(0.795) TCGA-64-5781-01 3 15499752 15499752 C A COLQ Missense_Mutation p.V299L 0.28 tolerated(0.23) unknown(0) TCGA-64-5781-01 3 156763572 156763572 G T LEKR1 3'UTR 0.39 TCGA-64-5781-01 3 156866174 156866174 C A CCNL1 Silent p.R479R 0.09 TCGA-64-5781-01 3 157178033 157178033 C A VEPH1 Missense_Mutation p.A156S 0.42 deleterious(0.01) benign(0.102) TCGA-64-5781-01 3 158537473 158537473 T A MFSD1 Missense_Mutation p.L279M 0.38 tolerated(0.07) benign(0.281) TCGA-64-5781-01 3 158538032 158538032 G C MFSD1 Missense_Mutation p.K309N 0.08 tolerated(0.12) possibly_damaging(0.646) TCGA-64-5781-01 3 159706910 159706910 G T IL12A Missense_Mutation p.A23S 0.24 tolerated_low_confidence(0.46) benign(0.002) TCGA-64-5781-01 3 164724667 164724667 G T SI Missense_Mutation p.T1448K 0.08 tolerated(0.07) benign(0.007) TCGA-64-5781-01 3 164777083 164777083 G T SI Missense_Mutation p.T384K 0.39 deleterious(0) possibly_damaging(0.791) TCGA-64-5781-01 3 164777759 164777759 G T SI Silent p.R359R 0.39 TCGA-64-5781-01 3 170184886 170184886 T C SLC7A14 Missense_Mutation p.E758G 0.24 tolerated(0.08) benign(0.017) TCGA-64-5781-01 3 171394595 171394595 C A PLD1 Silent p.R675R 0.52 TCGA-64-5781-01 3 171404495 171404495 C A PLD1 Missense_Mutation p.G616V 0.44 tolerated(0.1) possibly_damaging(0.776) TCGA-64-5781-01 3 172835507 172835507 G T SPATA16 Missense_Mutation p.S5R 0.07 deleterious_low_confidence(0.02) possibly_damaging(0.504) TCGA-64-5781-01 3 179316492 179316492 G C MRPL47 Missense_Mutation p.P125A 0.30 tolerated(0.08) probably_damaging(0.973) TCGA-64-5781-01 3 179537683 179537683 C A PEX5L Missense_Mutation p.A302S 0.09 tolerated(0.35) benign(0.016) TCGA-64-5781-01 3 183368109 183368109 C A KLHL24 5'UTR 0.16 TCGA-64-5781-01 3 183643372 183643372 C A ABCC5 Missense_Mutation p.D1395Y 0.12 deleterious(0) probably_damaging(0.998) TCGA-64-5781-01 3 183774708 183774708 C A HTR3C Missense_Mutation p.S145R 0.07 deleterious(0.02) benign(0.314) TCGA-64-5781-01 3 18427954 18427954 C A SATB1 Missense_Mutation p.L452F 0.24 deleterious(0.01) probably_damaging(0.972) TCGA-64-5781-01 3 190930383 190930383 G T OSTN Missense_Mutation p.S21I 0.48 tolerated(0.18) benign(0.051) TCGA-64-5781-01 3 20017161 20017161 G C RAB5A Missense_Mutation p.G78R 0.32 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 3 2967317 2967317 A T CNTN4 Silent p.V404V 0.34 TCGA-64-5781-01 3 32995815 32995815 C A CCR4 Missense_Mutation p.P301T 0.26 deleterious(0) probably_damaging(1) TCGA-64-5781-01 3 33557609 33557609 C T CLASP2 Missense_Mutation p.R1347K 0.23 tolerated(0.52) benign(0.026) TCGA-64-5781-01 3 33558651 33558651 T A CLASP2 Missense_Mutation p.H1276L 0.43 tolerated(0.15) possibly_damaging(0.489) TCGA-64-5781-01 3 38454547 38454547 C T XYLB 3'UTR 0.29 TCGA-64-5781-01 3 3887744 3887744 A T LRRN1 Silent p.S473S 0.27 TCGA-64-5781-01 3 43121603 43121603 C A POMGNT2 Nonsense_Mutation p.E441* 0.23 TCGA-64-5781-01 3 4711404 4711404 G T ITPR1 Silent p.L636L 0.27 TCGA-64-5781-01 3 48501642 48501642 G A ATRIP Missense_Mutation p.D397N 0.32 deleterious(0.01) possibly_damaging(0.907) TCGA-64-5781-01 3 49845456 49845456 G A UBA7 Silent p.A840A 0.33 TCGA-64-5781-01 3 50308357 50308357 T C SEMA3B-AS1 5'Flank 0.25 TCGA-64-5781-01 3 50327638 50327638 G A IFRD2 Silent p.L181L 0.35 TCGA-64-5781-01 3 51743227 51743227 G A GRM2 Silent p.P76P 0.27 TCGA-64-5781-01 3 54871258 54871258 G T CACNA2D3 Splice_Site p.X490_splice 0.21 TCGA-64-5781-01 3 57487119 57487119 G A DNAH12 Missense_Mutation p.L422F 0.13 deleterious(0) benign(0.041) TCGA-64-5781-01 3 57487120 57487120 G A DNAH12 Silent p.L421L 0.13 TCGA-64-5781-01 3 58178443 58178443 T A DNASE1L3 Missense_Mutation p.R297W 0.21 deleterious(0) possibly_damaging(0.844) TCGA-64-5781-01 3 8809287 8809287 C A OXTR Missense_Mutation p.G196V 0.19 deleterious(0) probably_damaging(0.996) TCGA-64-5781-01 3 89521734 89521734 C G EPHA3 Nonsense_Mutation p.Y937* 0.24 TCGA-64-5781-01 4 113539234 113539234 T A C4orf21 Missense_Mutation p.Y655F 0.20 tolerated(0.7) benign(0.201) TCGA-64-5781-01 4 126412051 126412051 T A FAT4 Missense_Mutation p.C4692S 0.22 probably_damaging(0.985) TCGA-64-5781-01 4 134072090 134072090 A C PCDH10 Silent p.P265P 0.15 TCGA-64-5781-01 4 13604728 13604728 C A BOD1L1 Missense_Mutation p.A1266S 0.23 benign(0.062) TCGA-64-5781-01 4 146463845 146463845 G A SMAD1 Missense_Mutation p.R257K 0.12 tolerated(0.92) benign(0.012) TCGA-64-5781-01 4 147824814 147824814 C A TTC29 Missense_Mutation p.K156N 0.17 deleterious(0.01) benign(0.359) TCGA-64-5781-01 4 148796291 148796291 C T ARHGAP10 Silent p.V274V 0.35 TCGA-64-5781-01 4 151023641 151023641 G T DCLK2 Missense_Mutation p.V145L 0.19 deleterious(0.03) possibly_damaging(0.868) TCGA-64-5781-01 4 151504190 151504190 C A MAB21L2 Silent p.A3A 0.28 TCGA-64-5781-01 4 151849739 151849739 C G LRBA Missense_Mutation p.A160P 0.14 deleterious(0) possibly_damaging(0.639) TCGA-64-5781-01 4 155156835 155156835 A C DCHS2 Missense_Mutation p.F2535C 0.18 tolerated(0.09) possibly_damaging(0.525) TCGA-64-5781-01 4 155219229 155219229 C A DCHS2 Missense_Mutation p.E1624D 0.20 tolerated(0.51) benign(0.004) TCGA-64-5781-01 4 155256183 155256183 G T DCHS2 Missense_Mutation p.D351E 0.16 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 4 156136234 156136234 C A NPY2R Silent p.V381V 0.13 TCGA-64-5781-01 4 159601639 159601639 T C ETFDH Silent p.L19L 0.19 TCGA-64-5781-01 4 159780333 159780333 A T FNIP2 Missense_Mutation p.N328Y 0.12 deleterious(0.05) benign(0.149) TCGA-64-5781-01 4 164246890 164246890 C A NPY1R Missense_Mutation p.R240S 0.23 deleterious(0) possibly_damaging(0.772) TCGA-64-5781-01 4 164272461 164272461 G A NPY5R Missense_Mutation p.D346N 0.21 tolerated(0.31) benign(0.006) TCGA-64-5781-01 4 169232422 169232422 C G DDX60 5'UTR 0.14 TCGA-64-5781-01 4 175416704 175416704 C A HPGD Missense_Mutation p.A165S 0.17 deleterious(0.02) benign(0.182) TCGA-64-5781-01 4 177648957 177648957 G T VEGFC Missense_Mutation p.T176N 0.28 deleterious(0.01) benign(0.269) TCGA-64-5781-01 4 187192858 187192858 A C F11 Missense_Mutation p.T51P 0.15 deleterious(0) probably_damaging(1) TCGA-64-5781-01 4 187455454 187455454 C T MTNR1A Missense_Mutation p.V148M 0.20 deleterious(0.03) possibly_damaging(0.531) TCGA-64-5781-01 4 187542468 187542468 C G FAT1 Missense_Mutation p.E1758Q 0.13 possibly_damaging(0.493) TCGA-64-5781-01 4 20543244 20543244 T C SLIT2 Splice_Site p.X715_splice 0.17 TCGA-64-5781-01 4 23816059 23816059 C A PPARGC1A Silent p.P349P 0.19 TCGA-64-5781-01 4 23833288 23833288 G A PPARGC1A Silent p.P107P 0.15 TCGA-64-5781-01 4 2951843 2951843 C A NOP14 Missense_Mutation p.G367V 0.18 tolerated(0.23) benign(0.079) TCGA-64-5781-01 4 4199402 4199402 G T OTOP1 Missense_Mutation p.R387S 0.24 deleterious(0) probably_damaging(0.993) TCGA-64-5781-01 4 420591 420591 T A ABCA11P RNA 0.21 TCGA-64-5781-01 4 46305517 46305517 G T GABRA2 Missense_Mutation p.F272L 0.16 deleterious(0) possibly_damaging(0.795) TCGA-64-5781-01 4 46930427 46930427 C A GABRA4 Missense_Mutation p.G494W 0.17 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-64-5781-01 4 46981053 46981054 - A GABRA4 Frame_Shift_Ins p.E90* 0.21 TCGA-64-5781-01 4 533009 533009 A G PIGG Missense_Mutation p.I935V 0.13 tolerated(0.41) benign(0.02) TCGA-64-5781-01 4 55971037 55971037 C A KDR Missense_Mutation p.G587V 0.14 deleterious(0.03) benign(0.263) TCGA-64-5781-01 4 57173812 57173812 C - KIAA1211 Frame_Shift_Del p.M79Wfs*4 0.18 TCGA-64-5781-01 4 57182846 57182846 G T KIAA1211 Missense_Mutation p.G1060W 0.15 deleterious(0.04) probably_damaging(0.992) TCGA-64-5781-01 4 5975560 5975560 T A C4orf50 Silent p.I552I 0.15 TCGA-64-5781-01 4 62845314 62845314 G T LPHN3 Missense_Mutation p.V879L 0.21 tolerated(0.06) benign(0.079) TCGA-64-5781-01 4 62849169 62849169 G T LPHN3 Silent p.L960L 0.17 TCGA-64-5781-01 4 65155456 65155456 A T TECRL Missense_Mutation p.N268K 0.16 deleterious(0) probably_damaging(0.995) TCGA-64-5781-01 4 66270133 66270133 G T EPHA5 Silent p.V583V 0.17 TCGA-64-5781-01 4 66356246 66356246 C - EPHA5 Frame_Shift_Del p.Q418Kfs*4 0.23 TCGA-64-5781-01 4 6863811 6863811 A G KIAA0232 Missense_Mutation p.T568A 0.18 tolerated(0.34) benign(0.014) TCGA-64-5781-01 4 68934442 68934442 C G TMPRSS11F Missense_Mutation p.E217Q 0.21 deleterious(0.02) probably_damaging(0.997) TCGA-64-5781-01 4 70071210 70071210 T G UGT2B11 Missense_Mutation p.N360H 0.08 deleterious(0.01) probably_damaging(1) TCGA-64-5781-01 4 70071213 70071213 G T UGT2B11 Missense_Mutation p.Q359K 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-64-5781-01 4 70346329 70346329 C A UGT2B4 3'UTR 0.19 TCGA-64-5781-01 4 70823494 70823494 G A CSN2 Missense_Mutation p.S58F 0.21 tolerated(0.67) possibly_damaging(0.831) TCGA-64-5781-01 4 71346651 71346651 A G MUC7 Missense_Mutation p.K64E 0.15 tolerated_low_confidence(0.78) possibly_damaging(0.542) TCGA-64-5781-01 4 71346954 71346954 A G MUC7 Missense_Mutation p.T165A 0.23 deleterious(0.02) unknown(0) TCGA-64-5781-01 4 77817745 77817745 C T SOWAHB Missense_Mutation p.E420K 0.15 deleterious(0.01) benign(0.292) TCGA-64-5781-01 4 79847698 79847698 C G PAQR3 Missense_Mutation p.G227R 0.16 deleterious(0) probably_damaging(0.998) TCGA-64-5781-01 4 80327728 80327728 G T GK2 Missense_Mutation p.L543I 0.12 deleterious(0) benign(0.126) TCGA-64-5781-01 4 82366732 82366732 T A RASGEF1B Silent p.V292V 0.23 TCGA-64-5781-01 4 844769 844769 C A GAK Missense_Mutation p.M1204I 0.23 deleterious(0) probably_damaging(0.986) TCGA-64-5781-01 4 87693953 87693953 G T PTPN13 Missense_Mutation p.D1736Y 0.21 deleterious(0) possibly_damaging(0.837) TCGA-64-5781-01 4 87770178 87770178 C A SLC10A6 Nonsense_Mutation p.E31* 0.18 TCGA-64-5781-01 4 89052318 89052318 G A ABCG2 Silent p.F142F 0.24 TCGA-64-5781-01 4 9836505 9836505 C A SLC2A9 Missense_Mutation p.Q473H 0.14 deleterious(0) probably_damaging(0.992) TCGA-64-5781-01 5 109178149 109178149 T G MAN2A1 Missense_Mutation p.L896R 0.29 deleterious(0) probably_damaging(1) TCGA-64-5781-01 5 11098738 11098738 C A CTNND2 Silent p.T862T 0.21 TCGA-64-5781-01 5 122337653 122337653 T C SNX24 Silent p.P132P 0.30 TCGA-64-5781-01 5 127609603 127609603 T - FBN2 Frame_Shift_Del p.N2590Tfs*21 0.13 TCGA-64-5781-01 5 127673811 127673811 A T FBN2 Missense_Mutation p.I1159N 0.38 deleterious(0) probably_damaging(0.933) TCGA-64-5781-01 5 13776646 13776646 C G DNAH5 Missense_Mutation p.G3092A 0.26 probably_damaging(0.939) TCGA-64-5781-01 5 139851881 139851881 G C ANKHD1 Intron 0.27 TCGA-64-5781-01 5 140181091 140181091 C A PCDHA3 Missense_Mutation p.S103R 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.7) TCGA-64-5781-01 5 140237058 140237058 G T PCDHA10 Silent p.T475T 0.29 TCGA-64-5781-01 5 140256592 140256592 C T PCDHA12 Missense_Mutation p.A512V 0.34 deleterious_low_confidence(0) possibly_damaging(0.691) TCGA-64-5781-01 5 140262359 140262359 C A PCDHA13 Missense_Mutation p.T169N 0.25 deleterious_low_confidence(0.02) benign(0.144) TCGA-64-5781-01 5 140308490 140308490 G C PCDHAC1 Missense_Mutation p.W671C 0.09 tolerated(0.18) possibly_damaging(0.503) TCGA-64-5781-01 5 140348144 140348144 C - PCDHAC2 Frame_Shift_Del p.P599Lfs*10 0.34 TCGA-64-5781-01 5 140476327 140476327 G T PCDHB2 Missense_Mutation p.E651D 0.36 tolerated_low_confidence(0.22) benign(0.044) TCGA-64-5781-01 5 140502416 140502416 G T PCDHB4 Missense_Mutation p.G279V 0.37 tolerated(0.07) benign(0.003) TCGA-64-5781-01 5 140537664 140537664 G T PCDHB17 3'UTR 0.34 TCGA-64-5781-01 5 140553578 140553578 G T PCDHB7 Missense_Mutation p.D388Y 0.17 deleterious_low_confidence(0.01) benign(0.074) TCGA-64-5781-01 5 140558593 140558593 A T PCDHB8 Silent p.G326G 0.05 TCGA-64-5781-01 5 140559020 140559020 C G PCDHB8 Missense_Mutation p.L469V 0.17 deleterious_low_confidence(0) benign(0.257) TCGA-64-5781-01 5 140559032 140559032 A C PCDHB8 Missense_Mutation p.S473R 0.09 deleterious_low_confidence(0.03) benign(0.05) TCGA-64-5781-01 5 140593986 140593986 C A PCDHB13 Nonsense_Mutation p.C97* 0.50 TCGA-64-5781-01 5 140698604 140698604 G A TAF7 Silent p.L336L 0.30 TCGA-64-5781-01 5 140725056 140725056 C G PCDHGA3 Missense_Mutation p.R486G 0.33 deleterious_low_confidence(0) benign(0.238) TCGA-64-5781-01 5 140769611 140769611 C T PCDHGB4 Silent p.A720A 0.34 TCGA-64-5781-01 5 140772969 140772969 G A PCDHGA8 Missense_Mutation p.E197K 0.37 deleterious_low_confidence(0.03) possibly_damaging(0.63) TCGA-64-5781-01 5 141244261 141244261 C A PCDH1 Silent p.L545L 0.35 TCGA-64-5781-01 5 146658824 146658824 G A STK32A Silent p.Q41Q 0.40 TCGA-64-5781-01 5 148586668 148586668 C A ABLIM3 Missense_Mutation p.S182R 0.14 deleterious(0.04) possibly_damaging(0.456) TCGA-64-5781-01 5 149751720 149751720 A G TCOF1 Missense_Mutation p.K264R 0.32 tolerated(0.3) benign(0.079) TCGA-64-5781-01 5 150922455 150922455 C A FAT2 Missense_Mutation p.D2745Y 0.38 possibly_damaging(0.812) TCGA-64-5781-01 5 150932774 150932774 C A FAT2 Nonsense_Mutation p.E1374* 0.20 TCGA-64-5781-01 5 153078460 153078460 A C GRIA1 Missense_Mutation p.N437H 0.27 tolerated(0.16) possibly_damaging(0.756) TCGA-64-5781-01 5 155007 155007 C G PLEKHG4B Silent p.S314S 0.26 TCGA-64-5781-01 5 16091001 16091001 T G MARCH11 Missense_Mutation p.I295L 0.31 tolerated(0.06) benign(0.263) TCGA-64-5781-01 5 162939126 162939126 G T MAT2B Missense_Mutation p.R61I 0.33 deleterious(0.04) benign(0.157) TCGA-64-5781-01 5 16477873 16477873 C G FAM134B Missense_Mutation p.E300Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 5 16565879 16565879 T A FAM134B Missense_Mutation p.S151C 0.15 deleterious(0.01) probably_damaging(0.913) TCGA-64-5781-01 5 169028523 169028523 G T SPDL1 Missense_Mutation p.V522L 0.25 tolerated(0.44) benign(0.002) TCGA-64-5781-01 5 169028583 169028583 G C SPDL1 Missense_Mutation p.A542P 0.21 tolerated(0.13) benign(0.004) TCGA-64-5781-01 5 17275961 17275961 G T BASP1 Silent p.V212V 0.14 TCGA-64-5781-01 5 178030931 178030931 G A CLK4 Missense_Mutation p.R407C 0.39 deleterious(0.03) benign(0.049) TCGA-64-5781-01 5 19473826 19473826 C G CDH18 Splice_Site p.X628_splice 0.17 TCGA-64-5781-01 5 19839113 19839113 G T CDH18 5'UTR 0.15 TCGA-64-5781-01 5 23509102 23509102 A T PRDM9 5'UTR 0.26 TCGA-64-5781-01 5 235330 235330 G T SDHA Missense_Mutation p.R379L 0.10 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-64-5781-01 5 32248925 32248925 T A MTMR12 Missense_Mutation p.K283N 0.26 tolerated(0.1) possibly_damaging(0.694) TCGA-64-5781-01 5 33643550 33643550 G T ADAMTS12 Missense_Mutation p.S502Y 0.21 deleterious(0) probably_damaging(0.98) TCGA-64-5781-01 5 33649028 33649028 C A ADAMTS12 Missense_Mutation p.G460C 0.26 tolerated(0.11) probably_damaging(0.971) TCGA-64-5781-01 5 33649046 33649046 C T ADAMTS12 Missense_Mutation p.D454N 0.23 deleterious(0) probably_damaging(0.998) TCGA-64-5781-01 5 33751520 33751520 C T ADAMTS12 Missense_Mutation p.C208Y 0.22 deleterious(0) probably_damaging(0.936) TCGA-64-5781-01 5 35659183 35659183 G T SPEF2 Missense_Mutation p.R347S 0.17 deleterious(0) possibly_damaging(0.86) TCGA-64-5781-01 5 35691205 35691205 A G SPEF2 Missense_Mutation p.I531V 0.15 tolerated(0.08) benign(0.12) TCGA-64-5781-01 5 35856993 35856993 C A IL7R 5'UTR 0.29 TCGA-64-5781-01 5 35873708 35873708 C A IL7R Missense_Mutation p.P222T 0.29 tolerated(0.34) probably_damaging(0.978) TCGA-64-5781-01 5 35954247 35954247 G T UGT3A1 3'UTR 0.27 TCGA-64-5781-01 5 39119135 39119135 C A FYB Missense_Mutation p.D758Y 0.20 deleterious(0) probably_damaging(0.928) TCGA-64-5781-01 5 39306837 39306837 G C C9 Missense_Mutation p.T433S 0.06 tolerated(0.28) benign(0.1) TCGA-64-5781-01 5 39393458 39393458 G A DAB2 Silent p.F43F 0.08 TCGA-64-5781-01 5 40834695 40834695 G A RPL37 Missense_Mutation p.S6L 0.24 deleterious(0.02) benign(0.208) TCGA-64-5781-01 5 41032890 41032890 C A MROH2B Missense_Mutation p.A799S 0.27 tolerated(0.13) benign(0.041) TCGA-64-5781-01 5 41049430 41049430 G T MROH2B Missense_Mutation p.Q485K 0.26 tolerated(1) benign(0) TCGA-64-5781-01 5 43040126 43040126 C A ANXA2R Missense_Mutation p.C8F 0.07 tolerated(0.66) benign(0.008) TCGA-64-5781-01 5 44809482 44809482 G T MRPS30 Missense_Mutation p.A140S 0.39 tolerated(0.19) benign(0.135) TCGA-64-5781-01 5 453846 453846 G A EXOC3 Silent p.K242K 0.07 TCGA-64-5781-01 5 480128 480128 G T SLC9A3 Intron 0.13 TCGA-64-5781-01 5 50680542 50680542 T A ISL1 Missense_Mutation p.Y66N 0.07 deleterious(0.02) probably_damaging(0.945) TCGA-64-5781-01 5 59284456 59284456 C G PDE4D Missense_Mutation p.R44P 0.41 tolerated_low_confidence(0.18) possibly_damaging(0.584) TCGA-64-5781-01 5 63509680 63509680 G A RNF180 Missense_Mutation p.G176E 0.36 tolerated(0.06) probably_damaging(0.972) TCGA-64-5781-01 5 6599858 6599858 C A NSUN2 3'UTR 0.28 TCGA-64-5781-01 5 72171445 72171445 C G TNPO1 Missense_Mutation p.L228V 0.12 deleterious(0) benign(0.236) TCGA-64-5781-01 5 76627258 76627258 C A PDE8B Missense_Mutation p.P228T 0.33 deleterious(0.01) probably_damaging(0.948) TCGA-64-5781-01 5 82837667 82837667 C A VCAN Missense_Mutation p.P2949T 0.20 tolerated(0.08) benign(0.021) TCGA-64-5781-01 5 86648978 86648978 G - RASA1 Frame_Shift_Del p.D421Tfs*3 0.24 TCGA-64-5781-01 5 895012 895012 G A TRIP13 Missense_Mutation p.R68K 0.15 tolerated(0.69) benign(0.001) TCGA-64-5781-01 5 9042987 9042987 G A SEMA5A 3'UTR 0.11 TCGA-64-5781-01 5 93855925 93855925 C A KIAA0825 3'UTR 0.28 TCGA-64-5781-01 5 93855926 93855926 C A KIAA0825 3'UTR 0.23 TCGA-64-5781-01 6 100898177 100898177 G A SIM1 Missense_Mutation p.S105L 0.23 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 6 100964152 100964152 G T ASCC3 Silent p.I1993I 0.25 TCGA-64-5781-01 6 112671283 112671283 G T RFPL4B Missense_Mutation p.D125Y 0.24 deleterious(0.04) benign(0.012) TCGA-64-5781-01 6 116837003 116837003 G T FAM26E Missense_Mutation p.A261S 0.16 tolerated(0.27) possibly_damaging(0.868) TCGA-64-5781-01 6 117244365 117244365 C A RFX6 Silent p.T511T 0.27 TCGA-64-5781-01 6 12161902 12161902 G A HIVEP1 Missense_Mutation p.G2240R 0.43 tolerated(0.07) probably_damaging(0.987) TCGA-64-5781-01 6 128294835 128294835 C A PTPRK Silent p.G1375G 0.28 TCGA-64-5781-01 6 129513901 129513901 A G LAMA2 Missense_Mutation p.D562G 0.33 tolerated(0.94) benign(0.001) TCGA-64-5781-01 6 130762366 130762366 G A TMEM200A Missense_Mutation p.D267N 0.30 tolerated(0.06) benign(0.105) TCGA-64-5781-01 6 136599485 136599485 C A BCLAF1 Silent p.P178P 0.10 TCGA-64-5781-01 6 136600958 136600958 C A BCLAF1 Missense_Mutation p.R16I 0.12 deleterious_low_confidence(0) unknown(0) TCGA-64-5781-01 6 144757093 144757093 A T UTRN Missense_Mutation p.H293L 0.35 tolerated(0.66) benign(0.017) TCGA-64-5781-01 6 146275911 146275911 C T SHPRH Missense_Mutation p.G183D 0.18 tolerated_low_confidence(0.63) benign(0.002) TCGA-64-5781-01 6 147680374 147680374 G T STXBP5 Silent p.T820T 0.22 TCGA-64-5781-01 6 160517644 160517644 G T IGF2R Missense_Mutation p.V2277L 0.20 deleterious(0.01) possibly_damaging(0.817) TCGA-64-5781-01 6 160978466 160978466 G A LPA Missense_Mutation p.P1590L 0.33 tolerated(0.09) benign(0.065) TCGA-64-5781-01 6 161010597 161010597 T A LPA Missense_Mutation p.Y1312F 0.26 tolerated(0.71) possibly_damaging(0.857) TCGA-64-5781-01 6 161162348 161162348 C T PLG Missense_Mutation p.A675V 0.16 tolerated(0.29) benign(0.444) TCGA-64-5781-01 6 161530849 161530849 G T MAP3K4 Silent p.L1433L 0.31 TCGA-64-5781-01 6 167591995 167591995 G T TCP10L2 Missense_Mutation p.G208C 0.21 tolerated(0.07) benign(0.03) TCGA-64-5781-01 6 167719471 167719471 C G UNC93A Missense_Mutation p.D303E 0.22 deleterious(0) benign(0.166) TCGA-64-5781-01 6 26252218 26252218 G A HIST1H2BH Missense_Mutation p.E114K 0.14 tolerated_low_confidence(0.07) benign(0.043) TCGA-64-5781-01 6 29080108 29080108 G T OR2J3 Silent p.L147L 0.43 TCGA-64-5781-01 6 29407951 29407951 C T OR10C1 Silent p.A53A 0.29 TCGA-64-5781-01 6 3105950 3105950 G T RIPK1 Missense_Mutation p.R414M 0.33 deleterious(0) probably_damaging(0.993) TCGA-64-5781-01 6 31500659 31500659 C A DDX39B Silent p.T255T 0.12 TCGA-64-5781-01 6 31514348 31514357 TGGCCGATGC - ATP6V1G2 5'UTR 0.41 TCGA-64-5781-01 6 32188337 32188337 G C NOTCH4 Missense_Mutation p.S335C 0.28 tolerated(0.05) probably_damaging(0.951) TCGA-64-5781-01 6 32411630 32411630 C G HLA-DRA Missense_Mutation p.I236M 0.44 tolerated(0.1) possibly_damaging(0.564) TCGA-64-5781-01 6 35810348 35810348 C G SRPK1 Missense_Mutation p.E552Q 0.25 deleterious(0.01) probably_damaging(1) TCGA-64-5781-01 6 37299039 37299039 G T TBC1D22B 3'UTR 0.42 TCGA-64-5781-01 6 39387722 39387722 A T KIF6 Splice_Site p.X604_splice 0.46 TCGA-64-5781-01 6 42713641 42713641 G T TBCC Missense_Mutation p.S57R 0.27 deleterious(0.04) benign(0.028) TCGA-64-5781-01 6 43417772 43417772 C A ABCC10 Missense_Mutation p.F1474L 0.14 deleterious(0) possibly_damaging(0.899) TCGA-64-5781-01 6 44144383 44144383 G T CAPN11 Missense_Mutation p.G356V 0.33 deleterious(0) probably_damaging(0.982) TCGA-64-5781-01 6 47592011 47592011 G C CD2AP 3'UTR 0.29 TCGA-64-5781-01 6 49928016 49928016 C T DEFB114 Missense_Mutation p.D67N 0.26 deleterious_low_confidence(0) benign(0.004) TCGA-64-5781-01 6 52103604 52103604 C A IL17F Missense_Mutation p.G60C 0.34 deleterious(0.01) possibly_damaging(0.508) TCGA-64-5781-01 6 6305623 6305623 C A F13A1 Missense_Mutation p.D94Y 0.33 deleterious(0.03) benign(0.216) TCGA-64-5781-01 6 64356528 64356528 C T PHF3 Silent p.S24S 0.27 TCGA-64-5781-01 6 70850878 70850878 T A COL19A1 Missense_Mutation p.D493E 0.25 tolerated(0.21) benign(0.228) TCGA-64-5781-01 6 70890392 70890392 C A COL19A1 Missense_Mutation p.P918T 0.28 tolerated(0.09) probably_damaging(0.98) TCGA-64-5781-01 6 76744338 76744338 C T IMPG1 Silent p.Q156Q 0.27 TCGA-64-5781-01 6 84772676 84772676 G T MRAP2 Silent p.L64L 0.19 TCGA-64-5781-01 6 87796049 87796049 T A CGA Silent p.P64P 0.17 TCGA-64-5781-01 6 87964645 87964646 - A ZNF292 Frame_Shift_Ins p.L434Tfs*10 0.24 TCGA-64-5781-01 6 89888660 89888660 C A GABRR1 Missense_Mutation p.M423I 0.25 tolerated(0.43) benign(0.009) TCGA-64-5781-01 7 100151090 100151090 G T AGFG2 Silent p.P184P 0.24 TCGA-64-5781-01 7 100159952 100159952 C T AGFG2 Silent p.D316D 0.33 TCGA-64-5781-01 7 100176407 100176407 G A LRCH4 Silent p.L201L 0.16 TCGA-64-5781-01 7 100184157 100184157 C A FBXO24 5'Flank 0.54 TCGA-64-5781-01 7 100320871 100320871 G T EPO 3'UTR 0.19 TCGA-64-5781-01 7 100359848 100359848 G T ZAN Missense_Mutation p.G1285C 0.25 unknown(0) TCGA-64-5781-01 7 100383678 100383678 C T ZAN Silent p.A2297A 0.33 TCGA-64-5781-01 7 100552899 100552899 G T MUC3A Missense_Mutation p.G515V 0.07 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 7 100676939 100676939 C A MUC17 Missense_Mutation p.P748T 0.16 probably_damaging(0.999) TCGA-64-5781-01 7 100678017 100678017 C A MUC17 Missense_Mutation p.P1107H 0.08 unknown(0) TCGA-64-5781-01 7 102939074 102939074 G T PMPCB Silent p.L53L 0.27 TCGA-64-5781-01 7 103163867 103163867 G T RELN Silent p.G2487G 0.14 TCGA-64-5781-01 7 103368565 103368565 C A RELN Missense_Mutation p.R249L 0.37 deleterious(0.02) benign(0.049) TCGA-64-5781-01 7 103808891 103808891 C A ORC5 Intron 0.19 TCGA-64-5781-01 7 116423428 116423428 T C MET Missense_Mutation p.Y1253H 0.15 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 7 120876855 120876855 C G CPED1 Missense_Mutation p.L715V 0.17 tolerated(0.12) benign(0.133) TCGA-64-5781-01 7 122338680 122338680 G A RNF133 Missense_Mutation p.S98L 0.13 tolerated(0.19) benign(0.007) TCGA-64-5781-01 7 123092745 123092745 C A IQUB 3'UTR 0.23 TCGA-64-5781-01 7 123508347 123508347 G T HYAL4 Missense_Mutation p.G7V 0.32 deleterious_low_confidence(0.02) benign(0.02) TCGA-64-5781-01 7 12679984 12679984 C T SCIN Nonsense_Mutation p.Q475* 0.36 TCGA-64-5781-01 7 127239547 127239547 G T FSCN3 Missense_Mutation p.Q411H 0.24 tolerated(0.1) benign(0.155) TCGA-64-5781-01 7 128138196 128138196 G C METTL2B Missense_Mutation p.G306R 0.12 deleterious(0.01) probably_damaging(0.989) TCGA-64-5781-01 7 128414653 128414653 G T OPN1SW Missense_Mutation p.R196S 0.19 tolerated(0.05) benign(0.255) TCGA-64-5781-01 7 130007240 130007240 C A CPA5 Nonsense_Mutation p.S289* 0.09 TCGA-64-5781-01 7 133884105 133884105 C A LRGUK Missense_Mutation p.S560Y 0.27 deleterious(0) probably_damaging(0.997) TCGA-64-5781-01 7 133948696 133948696 C A LRGUK Missense_Mutation p.T816N 0.55 deleterious(0.05) benign(0.312) TCGA-64-5781-01 7 135366290 135366290 G T SLC13A4 3'UTR 0.25 TCGA-64-5781-01 7 141896523 141896523 C T RP11-1220K2.2 Silent p.F1513F 0.23 TCGA-64-5781-01 7 142032070 142032070 T A TRBV7-1 Missense_Mutation p.I11K 0.21 deleterious(0) benign(0.306) TCGA-64-5781-01 7 142564763 142564763 C G EPHB6 Missense_Mutation p.R563G 0.19 deleterious(0) probably_damaging(1) TCGA-64-5781-01 7 142569428 142569428 C A TRPV6 3'UTR 0.39 TCGA-64-5781-01 7 142571321 142571321 G C TRPV6 Missense_Mutation p.S556R 0.21 tolerated(0.33) possibly_damaging(0.58) TCGA-64-5781-01 7 143047529 143047529 A T CLCN1 Missense_Mutation p.Q823L 0.15 deleterious(0) benign(0.131) TCGA-64-5781-01 7 143047730 143047730 G T CLCN1 Missense_Mutation p.V860F 0.13 deleterious(0.01) probably_damaging(0.977) TCGA-64-5781-01 7 143078840 143078840 G T ZYX Missense_Mutation p.R59L 0.33 deleterious(0.04) unknown(0) TCGA-64-5781-01 7 143807496 143807496 C A OR2A2 Missense_Mutation p.S274Y 0.13 deleterious(0.03) possibly_damaging(0.659) TCGA-64-5781-01 7 147092746 147092746 C A CNTNAP2 Missense_Mutation p.P515H 0.20 tolerated(0.14) benign(0.008) TCGA-64-5781-01 7 147092781 147092781 G T CNTNAP2 Missense_Mutation p.D527Y 0.25 deleterious(0.02) benign(0.336) TCGA-64-5781-01 7 147259350 147259350 G T CNTNAP2 Splice_Site p.X633_splice 0.12 TCGA-64-5781-01 7 148080826 148080826 C A CNTNAP2 Silent p.I1187I 0.21 TCGA-64-5781-01 7 149509063 149509063 G A SSPO RNA 0.10 TCGA-64-5781-01 7 149521636 149521636 C T SSPO RNA 0.24 TCGA-64-5781-01 7 150706129 150706129 G A NOS3 Missense_Mutation p.E742K 0.24 tolerated(0.28) benign(0.003) TCGA-64-5781-01 7 15240919 15240919 A T AGMO Silent p.P443P 0.35 TCGA-64-5781-01 7 154684122 154684122 G T DPP6 Missense_Mutation p.V844L 0.17 tolerated(0.3) benign(0.255) TCGA-64-5781-01 7 15584536 15584536 C G AGMO Missense_Mutation p.R90S 0.17 deleterious(0) benign(0.126) TCGA-64-5781-01 7 15601446 15601446 C A AGMO Missense_Mutation p.D9Y 0.25 tolerated(0.05) benign(0.001) TCGA-64-5781-01 7 157414075 157414075 G T PTPRN2 Missense_Mutation p.R775S 0.19 deleterious(0) probably_damaging(1) TCGA-64-5781-01 7 18688097 18688097 C - HDAC9 Frame_Shift_Del p.L421Yfs*29 0.19 TCGA-64-5781-01 7 18788727 18788727 G T HDAC9 Missense_Mutation p.R670L 0.29 deleterious(0) probably_damaging(0.996) TCGA-64-5781-01 7 19184799 19184799 C T FERD3L Missense_Mutation p.E63K 0.11 tolerated(0.44) benign(0.079) TCGA-64-5781-01 7 20721224 20721224 G T ABCB5 Nonsense_Mutation p.E602* 0.23 TCGA-64-5781-01 7 21639422 21639422 C T DNAH11 Silent p.F895F 0.23 TCGA-64-5781-01 7 27183050 27183050 C A HOXA5 Silent p.S59S 0.17 TCGA-64-5781-01 7 27285713 27285713 C T EVX1 Missense_Mutation p.S298L 0.44 deleterious(0.01) benign(0.054) TCGA-64-5781-01 7 2984049 2984049 C A CARD11 Missense_Mutation p.D161Y 0.10 deleterious(0) probably_damaging(1) TCGA-64-5781-01 7 31125054 31125054 C T ADCYAP1R1 Silent p.S222S 0.28 TCGA-64-5781-01 7 31126008 31126008 A T ADCYAP1R1 Missense_Mutation p.K227M 0.24 deleterious(0) probably_damaging(0.997) TCGA-64-5781-01 7 36895148 36895148 C A ELMO1 3'UTR 0.26 TCGA-64-5781-01 7 38305109 38305109 G A TRGC1 Nonsense_Mutation p.Q58* 0.44 TCGA-64-5781-01 7 40037171 40037171 G T CDK13 Silent p.P650P 0.34 TCGA-64-5781-01 7 41729730 41729730 C A INHBA Missense_Mutation p.G267W 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.656) TCGA-64-5781-01 7 43484068 43484068 G A HECW1 Missense_Mutation p.V433M 0.23 tolerated_low_confidence(0.12) benign(0.004) TCGA-64-5781-01 7 44153462 44153462 C A AEBP1 Missense_Mutation p.L1027M 0.26 tolerated_low_confidence(0.22) possibly_damaging(0.665) TCGA-64-5781-01 7 45743059 45743059 C T ADCY1 Nonsense_Mutation p.Q847* 0.20 TCGA-64-5781-01 7 47930295 47930295 G T PKD1L1 Missense_Mutation p.H840Q 0.15 tolerated(0.18) possibly_damaging(0.738) TCGA-64-5781-01 7 50514903 50514903 C A FIGNL1 Missense_Mutation p.G28V 0.26 tolerated(0.07) benign(0.01) TCGA-64-5781-01 7 53103830 53103830 C A POM121L12 Missense_Mutation p.Q156K 0.21 tolerated(0.37) possibly_damaging(0.486) TCGA-64-5781-01 7 54617582 54617582 G - VSTM2A Frame_Shift_Del p.K120Rfs*10 0.26 TCGA-64-5781-01 7 63726720 63726720 G C ZNF679 Missense_Mutation p.E237Q 0.20 deleterious(0.03) probably_damaging(0.998) TCGA-64-5781-01 7 71142239 71142239 C A WBSCR17 Missense_Mutation p.P483Q 0.18 tolerated(0.07) possibly_damaging(0.651) TCGA-64-5781-01 7 7283162 7283162 G T C1GALT1 Missense_Mutation p.G299V 0.15 tolerated(0.28) benign(0.067) TCGA-64-5781-01 7 73008622 73008622 G C MLXIPL Missense_Mutation p.L808V 0.12 deleterious(0) probably_damaging(0.997) TCGA-64-5781-01 7 78150938 78150938 G T MAGI2 Missense_Mutation p.P188Q 0.16 deleterious(0) probably_damaging(1) TCGA-64-5781-01 7 79082684 79082684 G T MAGI2 5'UTR 0.33 TCGA-64-5781-01 7 81746367 81746368 AT - CACNA2D1 Frame_Shift_Del p.Y173* 0.09 TCGA-64-5781-01 7 82544170 82544170 C A PCLO Missense_Mutation p.A4378S 0.17 unknown(0) TCGA-64-5781-01 7 82545171 82545171 C T PCLO Missense_Mutation p.R4044Q 0.39 unknown(0) TCGA-64-5781-01 7 83739857 83739857 G C SEMA3A Missense_Mutation p.H128D 0.15 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 7 84642099 84642099 G T SEMA3D Missense_Mutation p.D589E 0.12 tolerated(0.45) benign(0.015) TCGA-64-5781-01 7 89874756 89874756 C G C7orf63 Silent p.A6A 0.38 TCGA-64-5781-01 7 92015853 92015853 G A ANKIB1 Missense_Mutation p.E550K 0.21 deleterious(0.01) probably_damaging(0.986) TCGA-64-5781-01 7 92161862 92161862 A T RBM48 Missense_Mutation p.K149N 0.45 deleterious(0.01) benign(0.358) TCGA-64-5781-01 7 94915575 94915575 G T PPP1R9A Missense_Mutation p.G1223C 0.27 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 7 95442509 95442509 G T DYNC1I1 Silent p.V75V 0.13 TCGA-64-5781-01 7 95662087 95662087 C T DYNC1I1 Missense_Mutation p.P426S 0.11 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 7 99117525 99117525 G T ZKSCAN5 Missense_Mutation p.G210V 0.15 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 7 99474527 99474527 G A OR2AE1 Missense_Mutation p.L44F 0.39 tolerated(0.06) probably_damaging(0.965) TCGA-64-5781-01 8 101589249 101589249 G A SNX31 Nonsense_Mutation p.Q409* 0.21 TCGA-64-5781-01 8 10469148 10469149 GG A RP1L1 Frame_Shift_Del p.P820Lfs*109 0.31 TCGA-64-5781-01 8 104898239 104898239 G C RIMS2 Missense_Mutation p.R471P 0.12 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-64-5781-01 8 105001583 105001583 A G RIMS2 Missense_Mutation p.Y993C 0.17 tolerated_low_confidence(0.05) probably_damaging(0.951) TCGA-64-5781-01 8 105361010 105361010 A C DCSTAMP Missense_Mutation p.H77P 0.14 deleterious(0.04) possibly_damaging(0.883) TCGA-64-5781-01 8 105367361 105367361 C G DCSTAMP Nonsense_Mutation p.S429* 0.21 TCGA-64-5781-01 8 105440265 105440265 G T DPYS Silent p.I345I 0.19 TCGA-64-5781-01 8 10555378 10555378 C G C8orf74 Missense_Mutation p.L171V 0.12 deleterious(0) probably_damaging(1) TCGA-64-5781-01 8 10583554 10583554 G T SOX7 Silent p.A339A 0.15 TCGA-64-5781-01 8 108315513 108315513 A T ANGPT1 Missense_Mutation p.S297R 0.30 deleterious(0.01) possibly_damaging(0.521) TCGA-64-5781-01 8 110478983 110478983 C A PKHD1L1 Missense_Mutation p.L2864I 0.24 deleterious(0.01) possibly_damaging(0.804) TCGA-64-5781-01 8 113317142 113317142 C A CSMD3 Missense_Mutation p.V2692F 0.22 deleterious(0.02) possibly_damaging(0.67) TCGA-64-5781-01 8 113353818 113353818 C A CSMD3 Silent p.R2180R 0.28 TCGA-64-5781-01 8 117783872 117783872 G T UTP23 Nonsense_Mutation p.E181* 0.16 TCGA-64-5781-01 8 120612922 120612922 G T ENPP2 Missense_Mutation p.P323H 0.13 deleterious(0) possibly_damaging(0.473) TCGA-64-5781-01 8 125047670 125047670 C - FER1L6 Frame_Shift_Del p.P815Hfs*14 0.19 TCGA-64-5781-01 8 125988958 125988958 C T ZNF572 Missense_Mutation p.H150Y 0.18 deleterious(0) probably_damaging(0.997) TCGA-64-5781-01 8 12878740 12878740 A C KIAA1456 Silent p.P184P 0.12 TCGA-64-5781-01 8 133192464 133192464 C A KCNQ3 Silent p.R239R 0.24 TCGA-64-5781-01 8 13357316 13357316 C A DLC1 Missense_Mutation p.D89Y 0.17 tolerated_low_confidence(0.05) benign(0.016) TCGA-64-5781-01 8 133881998 133881998 C A TG Silent p.G67G 0.11 TCGA-64-5781-01 8 133881999 133881999 C G TG Missense_Mutation p.R68G 0.11 tolerated(0.44) benign(0.005) TCGA-64-5781-01 8 134488273 134488273 C G ST3GAL1 5'UTR 0.24 TCGA-64-5781-01 8 135613823 135613823 G A ZFAT Silent p.T713T 0.27 TCGA-64-5781-01 8 135817159 135817159 C A MIR30D RNA 0.15 TCGA-64-5781-01 8 139163634 139163634 C A FAM135B Silent p.V1028V 0.13 TCGA-64-5781-01 8 139255187 139255187 C T FAM135B Missense_Mutation p.E223K 0.12 deleterious(0.01) benign(0.269) TCGA-64-5781-01 8 141567304 141567304 C T AGO2 Missense_Mutation p.V304M 0.15 tolerated(0.21) benign(0.049) TCGA-64-5781-01 8 141754835 141754835 C A PTK2 Missense_Mutation p.S517I 0.18 tolerated(0.09) possibly_damaging(0.641) TCGA-64-5781-01 8 144944968 144944968 C A EPPK1 Silent p.L818L 0.20 TCGA-64-5781-01 8 145060242 145060242 G C PARP10 Silent p.L54L 0.16 TCGA-64-5781-01 8 145101812 145101812 C A SPATC1 Silent p.L577L 0.21 TCGA-64-5781-01 8 146107494 146107494 C T ZNF250 Silent p.G363G 0.17 TCGA-64-5781-01 8 2044234 2044234 A T MYOM2 Missense_Mutation p.H758L 0.14 deleterious(0.01) probably_damaging(0.988) TCGA-64-5781-01 8 22065020 22065020 C T BMP1 Missense_Mutation p.H856Y 0.23 tolerated(0.38) benign(0.02) TCGA-64-5781-01 8 24774647 24774647 C T NEFM Nonsense_Mutation p.R427* 0.21 TCGA-64-5781-01 8 25315782 25315782 C A KCTD9 5'UTR 0.24 TCGA-64-5781-01 8 25715978 25715978 G C EBF2 Missense_Mutation p.S462C 0.17 deleterious(0.04) benign(0.436) TCGA-64-5781-01 8 28360629 28360629 G T FZD3 Missense_Mutation p.L33F 0.19 deleterious(0) probably_damaging(0.998) TCGA-64-5781-01 8 2944759 2944759 T C CSMD1 Missense_Mutation p.N2445S 0.25 probably_damaging(0.93) TCGA-64-5781-01 8 32585597 32585597 G A NRG1 Splice_Site p.X211_splice 0.21 TCGA-64-5781-01 8 32617782 32617782 G A NRG1 Missense_Mutation p.V381I 0.21 tolerated(0.09) benign(0.019) TCGA-64-5781-01 8 33451050 33451050 C A DUSP26 Splice_Site p.X146_splice 0.07 TCGA-64-5781-01 8 36767015 36767015 C G KCNU1 Missense_Mutation p.R765G 0.10 tolerated(0.15) benign(0.012) TCGA-64-5781-01 8 37793322 37793322 G C GOT1L1 Missense_Mutation p.Q277E 0.21 deleterious(0) possibly_damaging(0.872) TCGA-64-5781-01 8 38912024 38912024 G T ADAM9 Nonsense_Mutation p.E443* 0.10 TCGA-64-5781-01 8 41577265 41577265 G T ANK1 Missense_Mutation p.P374T 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-64-5781-01 8 43211911 43211911 G T POTEA RNA 0.11 TCGA-64-5781-01 8 51621488 51621488 C A SNTG1 Missense_Mutation p.L412I 0.22 deleterious(0.02) possibly_damaging(0.647) TCGA-64-5781-01 8 53079446 53079446 C T ST18 Silent p.S390S 0.26 TCGA-64-5781-01 8 54714394 54714394 G C ATP6V1H Nonsense_Mutation p.Y214* 0.26 TCGA-64-5781-01 8 55542122 55542122 A G RP1 Missense_Mutation p.S1894G 0.14 tolerated(0.08) benign(0.001) TCGA-64-5781-01 8 56436481 56436481 T A XKR4 Missense_Mutation p.S550T 0.21 tolerated(0.4) benign(0.104) TCGA-64-5781-01 8 56723451 56723451 G A TGS1 Missense_Mutation p.D719N 0.21 deleterious(0) probably_damaging(1) TCGA-64-5781-01 8 67408724 67408724 G T C8orf46 Missense_Mutation p.K41N 0.11 deleterious(0.03) benign(0.178) TCGA-64-5781-01 8 69730552 69730552 T C C8orf34 3'UTR 0.27 TCGA-64-5781-01 8 72966087 72966087 C A TRPA1 Missense_Mutation p.W515C 0.21 tolerated(0.05) probably_damaging(0.937) TCGA-64-5781-01 8 72967971 72967971 G A TRPA1 Silent p.S438S 0.17 TCGA-64-5781-01 8 75898355 75898355 G T CRISPLD1 Nonsense_Mutation p.E45* 0.17 TCGA-64-5781-01 8 77617295 77617295 G T ZFHX4 Silent p.G324G 0.17 TCGA-64-5781-01 8 77618422 77618422 G T ZFHX4 Missense_Mutation p.R700L 0.19 benign(0.433) TCGA-64-5781-01 8 77764421 77764421 G T ZFHX4 Missense_Mutation p.G1755V 0.19 benign(0.018) TCGA-64-5781-01 8 77767836 77767836 T A ZFHX4 Missense_Mutation p.D2893E 0.21 benign(0.203) TCGA-64-5781-01 8 7808224 7808224 C G ZNF705B Silent p.S91S 0.29 TCGA-64-5781-01 8 86163132 86163132 C T CA13 Silent p.F67F 0.15 TCGA-64-5781-01 8 89068353 89068353 G T MMP16 Intron 0.22 TCGA-64-5781-01 8 89128827 89128827 C - MMP16 Frame_Shift_Del p.G331Afs*20 0.26 TCGA-64-5781-01 8 89128830 89128830 G T MMP16 Missense_Mutation p.T330N 0.28 tolerated(0.55) benign(0.087) TCGA-64-5781-01 8 95201473 95201473 A T CDH17 Missense_Mutation p.L31Q 0.22 deleterious(0) probably_damaging(0.998) TCGA-64-5781-01 8 95862156 95862156 G C INTS8 Silent p.L448L 0.17 TCGA-64-5781-01 8 97247745 97247745 T C UQCRB Missense_Mutation p.Q5R 0.19 tolerated_low_confidence(0.22) possibly_damaging(0.565) TCGA-64-5781-01 8 98288962 98288962 C G TSPYL5 Missense_Mutation p.E371Q 0.20 deleterious(0.01) probably_damaging(1) TCGA-64-5781-01 8 98954084 98954084 C T MATN2 Silent p.C264C 0.18 TCGA-64-5781-01 9 101806849 101806849 G A COL15A1 Splice_Site p.X859_splice 0.10 TCGA-64-5781-01 9 104433159 104433159 T A GRIN3A Missense_Mutation p.K512M 0.19 deleterious(0.01) possibly_damaging(0.576) TCGA-64-5781-01 9 1056563 1056563 G A DMRT2 Missense_Mutation p.V326I 0.26 deleterious_low_confidence(0.03) probably_damaging(0.994) TCGA-64-5781-01 9 105767801 105767801 C A CYLC2 Silent p.A296A 0.25 TCGA-64-5781-01 9 107360953 107360953 C A OR13C5 Missense_Mutation p.V248L 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-64-5781-01 9 107367420 107367420 C A OR13C2 Silent p.V163V 0.10 TCGA-64-5781-01 9 119737583 119737583 C T ASTN2 Missense_Mutation p.S547N 0.08 deleterious_low_confidence(0.01) unknown(0) TCGA-64-5781-01 9 119737608 119737608 C A ASTN2 Missense_Mutation p.G539C 0.13 deleterious(0) unknown(0) TCGA-64-5781-01 9 120476336 120476336 G T TLR4 Missense_Mutation p.V644L 0.15 tolerated(0.15) benign(0.391) TCGA-64-5781-01 9 120476778 120476778 G T TLR4 Missense_Mutation p.R791M 0.18 deleterious(0) probably_damaging(1) TCGA-64-5781-01 9 123535119 123535119 C A FBXW2 Splice_Site p.X274_splice 0.18 TCGA-64-5781-01 9 123877466 123877466 A T CNTRL Silent p.I481I 0.13 TCGA-64-5781-01 9 124544764 124544764 G A DAB2IP Intron 0.23 TCGA-64-5781-01 9 124922030 124922030 C A NDUFA8 5'UTR 0.14 TCGA-64-5781-01 9 125154597 125154597 G C PTGS1 Missense_Mutation p.G525A 0.23 deleterious(0.04) probably_damaging(1) TCGA-64-5781-01 9 126136903 126136903 C A CRB2 Silent p.L1145L 0.26 TCGA-64-5781-01 9 130432211 130432211 A T STXBP1 Missense_Mutation p.S313C 0.21 deleterious(0) probably_damaging(0.999) TCGA-64-5781-01 9 130511549 130511549 G A SH2D3C Silent p.V360V 0.18 TCGA-64-5781-01 9 132565439 132565439 G C TOR1B 5'UTR 0.25 TCGA-64-5781-01 9 139652454 139652454 C A LCN8 5'UTR 0.50 TCGA-64-5781-01 9 139905127 139905127 C A ABCA2 Missense_Mutation p.R2040L 0.21 deleterious(0) probably_damaging(0.976) TCGA-64-5781-01 9 139944322 139944322 C G ENTPD2 Missense_Mutation p.Q383H 0.19 deleterious(0) possibly_damaging(0.797) TCGA-64-5781-01 9 140952664 140952664 G A CACNA1B Missense_Mutation p.D1424N 0.20 deleterious(0.02) probably_damaging(0.995) TCGA-64-5781-01 9 14859203 14859203 T C FREM1 Silent p.P203P 0.17 TCGA-64-5781-01 9 17795576 17795576 G T SH3GL2 Silent p.L298L 0.21 TCGA-64-5781-01 9 21350617 21350617 G T IFNA6 Silent p.L90L 0.27 TCGA-64-5781-01 9 35092239 35092239 C A PIGO Missense_Mutation p.V549F 0.24 tolerated(0.06) benign(0.232) TCGA-64-5781-01 9 35700302 35700302 G A TLN1 Silent p.I2182I 0.21 TCGA-64-5781-01 9 35700304 35700304 T A TLN1 Missense_Mutation p.I2182F 0.22 deleterious(0) probably_damaging(0.987) TCGA-64-5781-01 9 40772665 40772666 CC T ZNF658 Frame_Shift_Del p.R870Kfs*182 0.13 TCGA-64-5781-01 9 5465513 5465513 C T CD274 Missense_Mutation p.H233Y 0.19 tolerated(0.36) benign(0.002) TCGA-64-5781-01 9 71098950 71098950 G A PGM5 Missense_Mutation p.V489M 0.09 deleterious(0) possibly_damaging(0.638) TCGA-64-5781-01 9 71555567 71555567 G C PIP5K1B Missense_Mutation p.G455R 0.16 tolerated(0.06) benign(0.209) TCGA-64-5781-01 9 72967157 72967157 C T SMC5 Silent p.Y1072Y 0.12 TCGA-64-5781-01 9 74526692 74526692 G A C9orf85 Silent p.Q14Q 0.14 TCGA-64-5781-01 9 78710913 78710913 C T PCSK5 Silent p.S334S 0.10 TCGA-64-5781-01 9 84564721 84564721 C A RP11-383M4.6 Intron 0.27 TCGA-64-5781-01 9 84603710 84603710 T A SPATA31D1 5'UTR 0.12 TCGA-64-5781-01 9 84603714 84603714 G A SPATA31D1 5'UTR 0.13 TCGA-64-5781-01 9 8499764 8499764 G T PTPRD Silent p.P735P 0.22 TCGA-64-5781-01 9 8518231 8518231 G T PTPRD Nonsense_Mutation p.S387* 0.18 TCGA-64-5781-01 9 86912137 86912137 T C SLC28A3 Missense_Mutation p.K287R 0.15 tolerated(0.08) benign(0.262) TCGA-64-5781-01 9 87486716 87486716 C T NTRK2 Intron 0.22 TCGA-64-5781-01 9 95992121 95992121 G T WNK2 Silent p.T275T 0.31 TCGA-64-5781-01 9 96860156 96860156 A T PTPDC1 Missense_Mutation p.Q434H 0.14 deleterious(0.02) benign(0.043) TCGA-64-5781-01 X 102974075 102974075 C A GLRA4 Missense_Mutation p.M281I 0.19 tolerated(0.34) possibly_damaging(0.797) TCGA-64-5781-01 X 110366331 110366331 A T PAK3 5'UTR 0.19 TCGA-64-5781-01 X 11187695 11187695 C A ARHGAP6 Missense_Mutation p.R580L 0.28 deleterious(0) possibly_damaging(0.855) TCGA-64-5781-01 X 112058742 112058742 C A AMOT Silent p.R412R 0.21 TCGA-64-5781-01 X 11316746 11316746 C A AMELX Missense_Mutation p.P89T 0.29 deleterious(0.05) unknown(0) TCGA-64-5781-01 X 117043381 117043381 G A KLHL13 Nonsense_Mutation p.R420* 0.24 TCGA-64-5781-01 X 117960378 117960378 G T ZCCHC12 Missense_Mutation p.A391S 0.13 tolerated_low_confidence(0.28) benign(0.003) TCGA-64-5781-01 X 120008872 120008872 G T CT47B1 Missense_Mutation p.P218H 0.17 deleterious(0) unknown(0) TCGA-64-5781-01 X 120009270 120009270 T A CT47B1 Silent p.S85S 0.25 TCGA-64-5781-01 X 122460066 122460066 T A GRIA3 Splice_Site p.X232_splice 0.12 TCGA-64-5781-01 X 132160979 132160979 C A USP26 Missense_Mutation p.D424Y 0.15 deleterious(0.02) benign(0.06) TCGA-64-5781-01 X 134987498 134987498 A C SAGE1 Missense_Mutation p.Q134P 0.16 tolerated(0.23) benign(0.049) TCGA-64-5781-01 X 135429356 135429356 C A GPR112 Missense_Mutation p.T1164N 0.23 deleterious(0) possibly_damaging(0.855) TCGA-64-5781-01 X 135429357 135429357 T A GPR112 Silent p.T1164T 0.24 TCGA-64-5781-01 X 136649858 136649858 G C ZIC3 Silent p.G336G 0.24 TCGA-64-5781-01 X 138612957 138612957 C A F9 Missense_Mutation p.P12T 0.12 tolerated(0.39) benign(0.118) TCGA-64-5781-01 X 141290631 141290631 G C MAGEC2 3'UTR 0.22 TCGA-64-5781-01 X 141291417 141291417 C T MAGEC2 Silent p.Q119Q 0.12 TCGA-64-5781-01 X 145078248 145078248 G T MIR892A RNA 0.24 TCGA-64-5781-01 X 14627266 14627266 G T GLRA2 Missense_Mutation p.G290V 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-64-5781-01 X 148798282 148798282 C A MAGEA11 Missense_Mutation p.P379H 0.19 deleterious(0.01) probably_damaging(1) TCGA-64-5781-01 X 150349713 150349713 C A GPR50 Missense_Mutation p.P553H 0.18 tolerated_low_confidence(0.19) benign(0.246) TCGA-64-5781-01 X 152772618 152772618 G C BGN Missense_Mutation p.G295A 0.23 deleterious(0) probably_damaging(1) TCGA-64-5781-01 X 153129776 153129776 C A L1CAM Splice_Site p.X1108_splice 0.18 TCGA-64-5781-01 X 153129777 153129777 C T L1CAM Missense_Mutation p.G1108S 0.17 tolerated(0.16) benign(0.007) TCGA-64-5781-01 X 16168633 16168633 C A GRPR Missense_Mutation p.P207T 0.16 deleterious(0.01) probably_damaging(1) TCGA-64-5781-01 X 18192213 18192213 C G BEND2 Missense_Mutation p.A640P 0.11 deleterious(0.03) benign(0.075) TCGA-64-5781-01 X 19443709 19443709 T C MAP3K15 Missense_Mutation p.H460R 0.16 deleterious(0.01) benign(0.001) TCGA-64-5781-01 X 21674824 21674824 C A KLHL34 Silent p.V361V 0.19 TCGA-64-5781-01 X 23412035 23412035 G A PTCHD1 Silent p.Q800Q 0.15 TCGA-64-5781-01 X 27766004 27766004 C T DCAF8L2 Missense_Mutation p.P331L 0.27 deleterious(0) probably_damaging(0.964) TCGA-64-5781-01 X 27999046 27999046 C A DCAF8L1 Missense_Mutation p.D136Y 0.18 deleterious(0) possibly_damaging(0.832) TCGA-64-5781-01 X 35821107 35821107 T A MAGEB16 Missense_Mutation p.V265E 0.17 deleterious(0) probably_damaging(0.956) TCGA-64-5781-01 X 41000658 41000658 G C USP9X Missense_Mutation p.E379Q 0.15 deleterious(0.01) probably_damaging(0.942) TCGA-64-5781-01 X 47062972 47062972 C G UBA1 Silent p.L484L 0.21 TCGA-64-5781-01 X 48783166 48783166 C A OTUD5 Missense_Mutation p.R412L 0.22 deleterious(0) possibly_damaging(0.769) TCGA-64-5781-01 X 48820029 48820029 T A KCND1 Missense_Mutation p.D586V 0.26 tolerated_low_confidence(0.22) benign(0.028) TCGA-64-5781-01 X 54467179 54467179 G C TSR2 Silent p.L46L 0.21 TCGA-64-5781-01 X 54783923 54783923 G A ITIH6 Missense_Mutation p.P862S 0.14 tolerated_low_confidence(0.41) benign(0.005) TCGA-64-5781-01 X 73061383 73061383 C T XIST RNA 0.23 TCGA-64-5781-01 X 73963350 73963350 G T KIAA2022 Silent p.R348R 0.16 TCGA-64-5781-01 X 83128556 83128556 T A CYLC1 Nonsense_Mutation p.Y280* 0.28 TCGA-64-5781-01 X 90691552 90691552 G - PABPC5 Frame_Shift_Del p.S327Qfs*7 0.12 TCGA-64-5781-01 X 90691715 90691715 G C PABPC5 Missense_Mutation p.R380P 0.26 deleterious_low_confidence(0.02) benign(0.003) TCGA-64-5815-01 10 107016648 107016648 G C SORCS3 Missense_Mutation p.G1137R 0.09 deleterious(0) probably_damaging(0.999) TCGA-64-5815-01 10 108716302 108716302 G A SORCS1 Silent p.L199L 0.11 TCGA-64-5815-01 10 128149993 128149993 G T C10orf90 Missense_Mutation p.P566T 0.20 deleterious(0.01) benign(0.436) TCGA-64-5815-01 10 128193340 128193340 C T C10orf90 Silent p.T143T 0.19 TCGA-64-5815-01 10 72299432 72299432 G A PALD1 Missense_Mutation p.E608K 0.23 deleterious(0.01) possibly_damaging(0.778) TCGA-64-5815-01 10 82043758 82043758 C T MAT1A Missense_Mutation p.G69D 0.23 deleterious(0) probably_damaging(1) TCGA-64-5815-01 11 101344259 101344259 G T TRPC6 Missense_Mutation p.Q664K 0.20 tolerated(0.26) probably_damaging(0.991) TCGA-64-5815-01 11 102464254 102464254 G T MMP20 Missense_Mutation p.P388Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-64-5815-01 11 22696333 22696333 G A GAS2 Intron 0.39 TCGA-64-5815-01 11 33373699 33373699 C T HIPK3 Missense_Mutation p.P1020L 0.15 tolerated(0.11) probably_damaging(0.999) TCGA-64-5815-01 11 44069816 44069816 G T ACCSL Missense_Mutation p.R77L 0.17 deleterious(0) benign(0.018) TCGA-64-5815-01 11 48238701 48238701 G T OR4B1 Missense_Mutation p.V114L 0.16 deleterious(0.01) benign(0.053) TCGA-64-5815-01 11 55761523 55761523 G T OR5F1 Silent p.I193I 0.13 TCGA-64-5815-01 11 57970805 57970805 A T OR1S2 Silent p.T283T 0.13 TCGA-64-5815-01 11 58190310 58190310 A T OR5B2 Missense_Mutation p.L142Q 0.17 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-64-5815-01 11 76751142 76751142 G T B3GNT6 Missense_Mutation p.G183C 0.25 deleterious(0) probably_damaging(0.971) TCGA-64-5815-01 12 25380276 25380276 T A KRAS Missense_Mutation p.Q61L 0.14 deleterious(0) probably_damaging(0.94) TCGA-64-5815-01 12 29648339 29648339 C T OVCH1 Silent p.Q111Q 0.15 TCGA-64-5815-01 12 31236811 31236811 G A DDX11 Missense_Mutation p.R70H 0.19 tolerated(0.13) benign(0.009) TCGA-64-5815-01 12 50348099 50348099 T A AQP2 Silent p.L174L 0.36 TCGA-64-5815-01 12 51442105 51442106 AC - LETMD1 5'Flank 0.19 TCGA-64-5815-01 12 52964528 52964528 G T KRT74 Silent p.I311I 0.18 TCGA-64-5815-01 12 6161858 6161858 G T VWF Nonsense_Mutation p.C679* 0.12 TCGA-64-5815-01 12 75875650 75875650 T A GLIPR1 Missense_Mutation p.W71R 0.22 deleterious(0) probably_damaging(1) TCGA-64-5815-01 12 76442203 76442203 C A NAP1L1 3'UTR 0.08 TCGA-64-5815-01 12 80764456 80764456 C T OTOGL Missense_Mutation p.T2232I 0.13 deleterious(0) probably_damaging(0.92) TCGA-64-5815-01 12 86272289 86272289 T A NTS Missense_Mutation p.M101K 0.17 deleterious(0) possibly_damaging(0.478) TCGA-64-5815-01 13 101278052 101278052 C A TMTC4 Missense_Mutation p.A561S 0.18 deleterious(0) probably_damaging(0.95) TCGA-64-5815-01 13 29599523 29599523 C T MTUS2 Missense_Mutation p.P240S 0.12 tolerated(0.46) benign(0.007) TCGA-64-5815-01 14 104452579 104452579 C T TDRD9 Missense_Mutation p.P346L 0.12 deleterious(0.02) probably_damaging(0.913) TCGA-64-5815-01 14 105622114 105622114 C A JAG2 Missense_Mutation p.A230S 0.15 tolerated(0.13) probably_damaging(0.998) TCGA-64-5815-01 14 20767602 20767602 C A TTC5 Missense_Mutation p.R134S 0.15 deleterious(0.01) benign(0.011) TCGA-64-5815-01 14 22471786 22471786 C A TRAV18 Nonsense_Mutation p.S70* 0.14 TCGA-64-5815-01 14 58814512 58814512 A T ARID4A Missense_Mutation p.L440F 0.13 tolerated(0.05) benign(0.397) TCGA-64-5815-01 14 75515969 75515969 C A MLH3 Silent p.L130L 0.04 TCGA-64-5815-01 14 77951118 77951118 G T ISM2 Missense_Mutation p.P96T 0.29 tolerated_low_confidence(0.37) probably_damaging(0.981) TCGA-64-5815-01 14 88729653 88729653 C T KCNK10 Missense_Mutation p.E99K 0.17 deleterious(0) probably_damaging(0.997) TCGA-64-5815-01 15 24923058 24923058 G T NPAP1 Missense_Mutation p.V682L 0.15 tolerated(0.36) benign(0.068) TCGA-64-5815-01 15 25456828 25456828 C A SNORD115-22 3'Flank 0.20 TCGA-64-5815-01 15 25477421 25477421 C A SNORD115-33 3'Flank 0.23 TCGA-64-5815-01 15 28116372 28116372 G T OCA2 Silent p.A724A 0.08 TCGA-64-5815-01 15 33893671 33893671 G T RYR3 Missense_Mutation p.A614S 0.13 benign(0.044) TCGA-64-5815-01 15 34295296 34295296 C A AVEN Missense_Mutation p.V128F 0.20 tolerated(0.06) possibly_damaging(0.711) TCGA-64-5815-01 15 35083387 35083387 A T ACTC1 Silent p.T306T 0.18 TCGA-64-5815-01 15 37184416 37184416 A T MEIS2 Missense_Mutation p.D464E 0.14 tolerated_low_confidence(0.33) benign(0.003) TCGA-64-5815-01 15 40265942 40265942 G A EIF2AK4 Missense_Mutation p.V604I 0.17 deleterious(0) probably_damaging(0.981) TCGA-64-5815-01 15 42646599 42646599 A G GANC 3'Flank 0.30 TCGA-64-5815-01 15 45399643 45399643 C A DUOX2 Missense_Mutation p.E531D 0.16 tolerated(0.08) probably_damaging(0.997) TCGA-64-5815-01 15 63076138 63076138 C T TLN2 Intron 0.10 TCGA-64-5815-01 15 91424922 91424922 C T FURIN Silent p.F733F 0.14 TCGA-64-5815-01 16 27221911 27221911 G A KDM8 Missense_Mutation p.R194H 0.16 tolerated(0.32) benign(0.003) TCGA-64-5815-01 16 28845864 28845864 A T ATXN2L Silent p.P761P 0.14 TCGA-64-5815-01 16 30748494 30748494 C T SRCAP Missense_Mutation p.T2378I 0.16 benign(0.441) TCGA-64-5815-01 16 31106838 31106838 T C VKORC1 5'Flank 0.18 TCGA-64-5815-01 16 31234173 31234173 C - TRIM72 Frame_Shift_Del p.P257Hfs*28 0.24 TCGA-64-5815-01 16 31488202 31488202 C A TGFB1I1 Silent p.G330G 0.23 TCGA-64-5815-01 16 32890975 32890975 C A SLC6A10P RNA 0.19 TCGA-64-5815-01 16 34712326 34712326 C G RP11-80F22.9 RNA 0.30 TCGA-64-5815-01 16 67263062 67263062 C A TMEM208 3'UTR 0.25 TCGA-64-5815-01 16 67719580 67719580 G A GFOD2 Silent p.G13G 0.14 TCGA-64-5815-01 16 72139923 72139923 G T DHX38 Missense_Mutation p.G836V 0.16 deleterious(0) probably_damaging(0.999) TCGA-64-5815-01 17 10315771 10315771 G T MYH8 Silent p.T444T 0.21 TCGA-64-5815-01 17 37864628 37864628 G A ERBB2 Missense_Mutation p.V94I 0.15 tolerated(1) benign(0.004) TCGA-64-5815-01 17 56679854 56679854 G T TEX14 Nonsense_Mutation p.Y484* 0.24 TCGA-64-5815-01 17 61657267 61657267 G A DCAF7 Intron 0.34 TCGA-64-5815-01 17 62018277 62018277 A T SCN4A Missense_Mutation p.S1789T 0.24 tolerated_low_confidence(1) benign(0) TCGA-64-5815-01 17 64210617 64210617 A T APOH Missense_Mutation p.D312E 0.22 tolerated(0.89) benign(0.002) TCGA-64-5815-01 17 74324814 74324814 T A PRPSAP1 Silent p.P255P 0.25 TCGA-64-5815-01 17 79563247 79563247 C T NPLOC4 Missense_Mutation p.E339K 0.10 deleterious(0.01) probably_damaging(1) TCGA-64-5815-01 18 28906921 28906921 G A DSG1 Missense_Mutation p.A57T 0.16 deleterious(0.02) benign(0.369) TCGA-64-5815-01 19 10671747 10671747 C G KRI1 Missense_Mutation p.E205Q 0.16 deleterious(0.03) benign(0.099) TCGA-64-5815-01 19 19766368 19766368 G A ATP13A1 Silent p.A455A 0.15 TCGA-64-5815-01 19 20003092 20003092 G T ZNF253 Missense_Mutation p.G346C 0.11 deleterious(0.01) probably_damaging(1) TCGA-64-5815-01 19 30936248 30936248 C T ZNF536 Silent p.D593D 0.17 TCGA-64-5815-01 19 31768002 31768002 G T TSHZ3 Missense_Mutation p.N899K 0.19 deleterious(0) benign(0.027) TCGA-64-5815-01 19 3273914 3273914 C T CELF5 Silent p.R129R 0.13 TCGA-64-5815-01 19 38600929 38600929 G A SIPA1L3 Silent p.A732A 0.10 TCGA-64-5815-01 19 39359959 39359959 G A RINL Silent p.S522S 0.24 TCGA-64-5815-01 19 39963500 39963500 A T SUPT5H Missense_Mutation p.R696W 0.17 deleterious(0.02) possibly_damaging(0.662) TCGA-64-5815-01 19 39963501 39963501 G T SUPT5H Missense_Mutation p.R696M 0.17 deleterious(0.05) possibly_damaging(0.593) TCGA-64-5815-01 19 46094525 46094525 C A GPR4 Silent p.S200S 0.12 TCGA-64-5815-01 19 46124786 46124786 C A EML2 Silent p.R518R 0.25 TCGA-64-5815-01 19 50474623 50474623 C A SIGLEC16 RNA 0.25 TCGA-64-5815-01 19 51298092 51298092 C T ACPT Silent p.L346L 0.12 TCGA-64-5815-01 19 51728785 51728785 T G CD33 Missense_Mutation p.F117V 0.09 deleterious(0.03) possibly_damaging(0.872) TCGA-64-5815-01 19 54780244 54780244 A T LILRB2 Missense_Mutation p.L517Q 0.12 tolerated(0.06) probably_damaging(0.983) TCGA-64-5815-01 19 55179543 55179543 G T LILRB4 3'UTR 0.15 TCGA-64-5815-01 19 56244334 56244334 C T NLRP9 Missense_Mutation p.R288Q 0.16 tolerated(1) benign(0.003) TCGA-64-5815-01 19 9361871 9361871 C A OR7E24 Missense_Mutation p.S51Y 0.20 deleterious(0.01) benign(0.111) TCGA-64-5815-01 19 9361872 9361872 C A OR7E24 Silent p.S51S 0.20 TCGA-64-5815-01 1 111731363 111731363 T A DENND2D Missense_Mutation p.I354F 0.12 deleterious(0) possibly_damaging(0.558) TCGA-64-5815-01 1 116243867 116243867 C A CASQ2 Nonsense_Mutation p.E399* 0.16 TCGA-64-5815-01 1 12343685 12343685 C G VPS13D Missense_Mutation p.H1842Q 0.14 possibly_damaging(0.907) TCGA-64-5815-01 1 156552882 156552882 C T TTC24 Missense_Mutation p.A320V 0.22 deleterious(0) probably_damaging(1) TCGA-64-5815-01 1 160106081 160106081 C G ATP1A2 Missense_Mutation p.I828M 0.15 deleterious(0) probably_damaging(0.994) TCGA-64-5815-01 1 161495342 161495342 C T HSPA6 Silent p.S298S 0.11 TCGA-64-5815-01 1 165397965 165397965 G T RXRG Silent p.P96P 0.08 TCGA-64-5815-01 1 175355195 175355195 C A TNR Missense_Mutation p.D584Y 0.31 deleterious(0.04) possibly_damaging(0.61) TCGA-64-5815-01 1 176659389 176659389 G C PAPPA2 Missense_Mutation p.E752Q 0.11 tolerated(0.16) probably_damaging(0.954) TCGA-64-5815-01 1 179833904 179833904 C A TOR1AIP2 Intron 0.39 TCGA-64-5815-01 1 214638034 214638034 G C PTPN14 Missense_Mutation p.S38W 0.20 deleterious(0) probably_damaging(0.996) TCGA-64-5815-01 1 240370528 240370528 A T FMN2 Missense_Mutation p.S806C 0.27 unknown(0) TCGA-64-5815-01 1 246930495 246930495 A G SCCPDH Splice_Site p.X395_splice 0.13 TCGA-64-5815-01 1 247978955 247978955 G A OR14A16 Missense_Mutation p.S26L 0.07 tolerated(0.53) benign(0.174) TCGA-64-5815-01 1 248129110 248129110 G T OR2AK2 Missense_Mutation p.M159I 0.14 tolerated(0.27) benign(0.05) TCGA-64-5815-01 1 248263034 248263034 C T OR2L13 Silent p.Y119Y 0.15 TCGA-64-5815-01 1 41284241 41284241 C T KCNQ4 Silent p.A199A 0.07 TCGA-64-5815-01 1 46874210 46874210 G A FAAH Missense_Mutation p.R344Q 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-64-5815-01 1 67559199 67559199 G T C1orf141 Missense_Mutation p.P231H 0.11 tolerated(0.59) benign(0.254) TCGA-64-5815-01 1 92470776 92470776 C A BRDT Missense_Mutation p.Q899K 0.15 tolerated(0.23) benign(0.004) TCGA-64-5815-01 1 94933552 94933552 A T ABCD3 Silent p.T108T 0.09 TCGA-64-5815-01 20 21143719 21143721 CCA - RP4-777D9.2 Intron 0.19 TCGA-64-5815-01 20 43386385 43386385 C T RIMS4 Missense_Mutation p.R127Q 0.19 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-64-5815-01 20 43835719 43835719 C T SEMG1 Missense_Mutation p.L9F 0.16 tolerated(0.36) probably_damaging(0.992) TCGA-64-5815-01 20 50769536 50769536 T A ZFP64 Nonsense_Mutation p.K399* 0.17 TCGA-64-5815-01 20 55027579 55027579 C A CASS4 Missense_Mutation p.H449Q 0.21 tolerated(0.06) benign(0.219) TCGA-64-5815-01 20 62153051 62153051 G T PPDPF Missense_Mutation p.W55L 0.17 deleterious(0) possibly_damaging(0.565) TCGA-64-5815-01 21 32617938 32617938 C A TIAM1 Missense_Mutation p.G484W 0.09 deleterious(0) probably_damaging(0.986) TCGA-64-5815-01 21 47746331 47746331 C G PCNT Missense_Mutation p.S32W 0.16 benign(0.157) TCGA-64-5815-01 22 23438412 23438412 G C GNAZ Missense_Mutation p.R177P 0.25 deleterious(0) probably_damaging(0.999) TCGA-64-5815-01 22 23964346 23964346 G T C22orf43 Missense_Mutation p.L106M 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.663) TCGA-64-5815-01 22 26688407 26688407 C G SEZ6L Missense_Mutation p.P44A 0.10 tolerated_low_confidence(0.62) benign(0) TCGA-64-5815-01 22 26743796 26743796 C A SEZ6L Missense_Mutation p.P775H 0.21 deleterious(0) probably_damaging(1) TCGA-64-5815-01 22 27019232 27019232 G - CRYBA4 Frame_Shift_Del p.R26Gfs*22 0.18 TCGA-64-5815-01 22 32783990 32783990 T A RTCB Missense_Mutation p.I503F 0.23 deleterious(0) probably_damaging(0.939) TCGA-64-5815-01 2 132240477 132240477 G C TUBA3D 3'UTR 0.10 TCGA-64-5815-01 2 145157069 145157069 A - ZEB2 Frame_Shift_Del p.L562* 0.14 TCGA-64-5815-01 2 168102285 168102285 G T XIRP2 Missense_Mutation p.M1461I 0.07 benign(0) TCGA-64-5815-01 2 168102286 168102286 G T XIRP2 Missense_Mutation p.D1462Y 0.10 probably_damaging(0.99) TCGA-64-5815-01 2 197297866 197297866 A C HECW2 Silent p.L94L 0.24 TCGA-64-5815-01 2 200245208 200245208 C A SATB2 Missense_Mutation p.C159F 0.11 tolerated(0.29) benign(0.008) TCGA-64-5815-01 2 219689061 219689061 G T PRKAG3 Missense_Mutation p.L413M 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-64-5815-01 2 230231656 230231656 C A DNER Nonsense_Mutation p.E679* 0.18 TCGA-64-5815-01 2 233925275 233925275 C A INPP5D Silent p.L29L 0.22 TCGA-64-5815-01 2 241621967 241621967 C A AQP12B Silent p.V96V 0.33 TCGA-64-5815-01 2 242149716 242149716 G T ANO7 Missense_Mutation p.V510L 0.25 tolerated(0.45) benign(0.171) TCGA-64-5815-01 2 48033416 48033416 A G MSH6 Silent p.K1240K 0.14 TCGA-64-5815-01 2 60689438 60689438 G A BCL11A Silent p.H203H 0.12 TCGA-64-5815-01 2 74708198 74708198 G A CCDC142 Intron 0.22 TCGA-64-5815-01 3 100373949 100373949 G T GPR128 Missense_Mutation p.Q550H 0.19 tolerated(0.11) probably_damaging(0.997) TCGA-64-5815-01 3 100961629 100961629 G A IMPG2 Silent p.V975V 0.21 TCGA-64-5815-01 3 121207346 121207346 C A POLQ Missense_Mutation p.V1478F 0.19 tolerated(0.07) benign(0.395) TCGA-64-5815-01 3 121981079 121981079 G C CASR Missense_Mutation p.E399D 0.14 deleterious(0) probably_damaging(0.969) TCGA-64-5815-01 3 128060612 128060612 G A EEFSEC Silent p.T441T 0.22 TCGA-64-5815-01 3 147108811 147108811 G T ZIC4 Missense_Mutation p.S354Y 0.32 tolerated(0.26) probably_damaging(0.974) TCGA-64-5815-01 3 151171189 151171189 C A IGSF10 Missense_Mutation p.W233L 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-64-5815-01 3 165548045 165548045 C A BCHE Missense_Mutation p.W259C 0.13 deleterious(0) probably_damaging(0.999) TCGA-64-5815-01 3 172835364 172835364 C A SPATA16 Missense_Mutation p.G53V 0.15 deleterious(0.01) benign(0.11) TCGA-64-5815-01 3 196612677 196612677 G T SENP5 Missense_Mutation p.G209W 0.22 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-64-5815-01 3 196792237 196792237 A T DLG1 Missense_Mutation p.D794E 0.23 tolerated(0.07) benign(0.345) TCGA-64-5815-01 3 197346668 197346668 C A AC024560.3 RNA 0.31 TCGA-64-5815-01 3 48604563 48604563 G T COL7A1 Silent p.R2703R 0.19 TCGA-64-5815-01 3 85961555 85961555 C A CADM2 Missense_Mutation p.R181S 0.15 deleterious(0.03) benign(0.109) TCGA-64-5815-01 4 107248721 107248721 G T AIMP1 Missense_Mutation p.V99L 0.29 tolerated(0.21) benign(0.099) TCGA-64-5815-01 4 155720082 155720082 C A RBM46 Missense_Mutation p.F256L 0.19 deleterious(0) probably_damaging(0.984) TCGA-64-5815-01 4 170610315 170610315 A T CLCN3 Silent p.T180T 0.18 TCGA-64-5815-01 4 177649058 177649058 C A VEGFC Missense_Mutation p.K142N 0.19 deleterious(0) possibly_damaging(0.595) TCGA-64-5815-01 4 185705147 185705147 T C ACSL1 Splice_Site p.X104_splice 0.12 TCGA-64-5815-01 4 56236379 56236380 - ACCCC SRD5A3 3'UTR 0.35 TCGA-64-5815-01 4 69696511 69696511 G T UGT2B10 Missense_Mutation p.A501S 0.13 deleterious(0) possibly_damaging(0.864) TCGA-64-5815-01 4 74852992 74852992 A G PPBP Silent p.D128D 0.17 TCGA-64-5815-01 4 77660075 77660075 G T SHROOM3 Missense_Mutation p.S250I 0.25 deleterious(0.01) benign(0.383) TCGA-64-5815-01 4 8616222 8616222 G T CPZ Missense_Mutation p.E500D 0.18 deleterious(0.01) possibly_damaging(0.889) TCGA-64-5815-01 5 102519086 102519086 G T PPIP5K2 Missense_Mutation p.S1025I 0.15 deleterious_low_confidence(0.01) benign(0.132) TCGA-64-5815-01 5 140711971 140711971 G T PCDHGA1 Missense_Mutation p.G574C 0.44 deleterious_low_confidence(0) probably_damaging(1) TCGA-64-5815-01 5 167881064 167881064 G T WWC1 Nonsense_Mutation p.E873* 0.40 TCGA-64-5815-01 5 179739458 179739458 C A GFPT2 Missense_Mutation p.E506D 0.31 tolerated(0.1) benign(0.003) TCGA-64-5815-01 5 32230132 32230132 C A MTMR12 Nonsense_Mutation p.E666* 0.13 TCGA-64-5815-01 5 36679929 36679929 A T SLC1A3 Missense_Mutation p.Q354L 0.33 deleterious(0) probably_damaging(0.999) TCGA-64-5815-01 5 40853444 40853444 C T CARD6 Silent p.S670S 0.27 TCGA-64-5815-01 5 56210785 56210785 C G SETD9 Missense_Mutation p.D268E 0.14 tolerated(0.26) benign(0.024) TCGA-64-5815-01 5 9052129 9052129 C A SEMA5A Nonsense_Mutation p.E901* 0.17 TCGA-64-5815-01 6 110146400 110146400 A G FIG4 Missense_Mutation p.I886V 0.28 tolerated(0.53) benign(0) TCGA-64-5815-01 6 114262225 114262225 G A HDAC2 Silent p.P488P 0.29 TCGA-64-5815-01 6 170599211 170599211 G T DLL1 Missense_Mutation p.A6E 0.20 tolerated(0.3) possibly_damaging(0.466) TCGA-64-5815-01 6 25850090 25850090 C A SLC17A3 Missense_Mutation p.G405V 0.14 tolerated(0.15) benign(0.023) TCGA-64-5815-01 6 29640833 29640833 G T ZFP57 Missense_Mutation p.A352E 0.17 tolerated(0.14) benign(0.33) TCGA-64-5815-01 6 30682849 30682849 T C MDC1 Missense_Mutation p.H35R 0.20 tolerated(0.8) benign(0.001) TCGA-64-5815-01 6 32046888 32046888 C T RNA5SP206 5'Flank 0.19 TCGA-64-5815-01 6 43128496 43128496 G T PTK7 Missense_Mutation p.E1038D 0.21 tolerated(0.3) benign(0.101) TCGA-64-5815-01 6 56044588 56044588 G A COL21A1 Missense_Mutation p.T143M 0.19 deleterious(0) probably_damaging(1) TCGA-64-5815-01 6 6196093 6196093 C A F13A1 Silent p.S414S 0.17 TCGA-64-5815-01 6 70851786 70851786 G A COL19A1 Missense_Mutation p.G495E 0.20 deleterious(0) probably_damaging(1) TCGA-64-5815-01 6 91257770 91257770 T G MAP3K7 Missense_Mutation p.Q359P 0.11 tolerated(0.43) benign(0.001) TCGA-64-5815-01 7 11487045 11487045 G T THSD7A Missense_Mutation p.T871N 0.27 deleterious(0) benign(0.342) TCGA-64-5815-01 7 11630124 11630124 G A THSD7A Silent p.N472N 0.17 TCGA-64-5815-01 7 123268939 123268939 A T ASB15 Silent p.P297P 0.25 TCGA-64-5815-01 7 127224378 127224378 C A GCC1 Nonsense_Mutation p.G287* 0.17 TCGA-64-5815-01 7 128485006 128485006 C A FLNC Missense_Mutation p.P1163T 0.33 deleterious(0) probably_damaging(0.963) TCGA-64-5815-01 7 142563350 142563350 G T EPHB6 Missense_Mutation p.R356L 0.32 deleterious(0) possibly_damaging(0.644) TCGA-64-5815-01 7 147869451 147869451 C A CNTNAP2 Nonsense_Mutation p.S964* 0.17 TCGA-64-5815-01 7 148771596 148771596 C A ZNF786 Missense_Mutation p.W60C 0.25 tolerated(0.07) benign(0.034) TCGA-64-5815-01 7 36571810 36571810 G T AOAH Silent p.V456V 0.23 TCGA-64-5815-01 7 48335365 48335365 C T ABCA13 Silent p.S3008S 0.21 TCGA-64-5815-01 7 57187759 57187759 G T ZNF479 Missense_Mutation p.H455N 0.19 deleterious(0.01) benign(0.21) TCGA-64-5815-01 7 6213366 6213366 T A CYTH3 Splice_Site p.X123_splice 0.08 TCGA-64-5815-01 7 81579742 81579742 C T CACNA2D1 Nonsense_Mutation p.W1081* 0.18 TCGA-64-5815-01 8 101276266 101276266 A C RNF19A Silent p.A488A 0.16 TCGA-64-5815-01 8 104943582 104943582 G C RIMS2 Missense_Mutation p.R779T 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-64-5815-01 8 113241099 113241099 G T CSMD3 Nonsense_Mutation p.S3617* 0.15 TCGA-64-5815-01 8 142367968 142367968 G A GPR20 Missense_Mutation p.A19V 0.33 tolerated_low_confidence(0.56) benign(0) TCGA-64-5815-01 8 30702993 30702993 C A TEX15 Missense_Mutation p.D1181Y 0.17 deleterious(0) probably_damaging(0.977) TCGA-64-5815-01 8 48921025 48921025 C T UBE2V2 Missense_Mutation p.S4F 0.12 deleterious(0) benign(0.005) TCGA-64-5815-01 8 55537899 55537899 G T RP1 Missense_Mutation p.S486I 0.25 deleterious(0) benign(0.276) TCGA-64-5815-01 8 77618441 77618441 C A ZFHX4 Nonsense_Mutation p.Y706* 0.18 TCGA-64-5815-01 9 104432620 104432620 G A GRIN3A Missense_Mutation p.L692F 0.20 deleterious(0) probably_damaging(1) TCGA-64-5815-01 9 113173790 113173790 C T SVEP1 Nonsense_Mutation p.W2067* 0.12 TCGA-64-5815-01 9 130825794 130825794 G A NAIF1 Silent p.Y299Y 0.18 TCGA-64-5815-01 9 131847496 131847496 A T DOLPP1 Silent p.T91T 0.14 TCGA-64-5815-01 9 134382772 134382772 C T POMT1 Missense_Mutation p.P100S 0.13 tolerated(0.1) probably_damaging(0.986) TCGA-64-5815-01 9 14720224 14720224 C A CER1 Missense_Mutation p.C223F 0.24 deleterious(0) probably_damaging(1) TCGA-64-5815-01 9 70918967 70918967 C T FOXD4L3 Missense_Mutation p.P367L 0.11 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-64-5815-01 X 151283870 151283870 C A RP11-1007I13.4 RNA 0.55 TCGA-64-5815-01 X 154159113 154159113 C T F8 Silent p.S984S 0.25 TCGA-64-5815-01 X 26157198 26157198 G T MAGEB18 Silent p.V32V 0.25 TCGA-64-5815-01 X 48206417 48206417 T C SSX3 3'UTR 0.12 TCGA-64-5815-01 X 49063047 49063048 GC - CACNA1F Frame_Shift_Del p.R1810Pfs*5 0.36 TCGA-64-5815-01 X 73070089 73070089 G T XIST RNA 0.27 TCGA-64-5815-01 X 73524138 73524138 G A ZCCHC13 Missense_Mutation p.G13S 0.21 deleterious(0.01) probably_damaging(1) TCGA-64-5815-01 X 86869441 86869441 G T KLHL4 Missense_Mutation p.V199F 0.22 deleterious(0) probably_damaging(1) TCGA-67-3770-01 10 103917833 103917833 G T NOLC1 Missense_Mutation p.A157S 0.25 deleterious_low_confidence(0.02) benign(0.364) TCGA-67-3770-01 10 105361828 105361828 C G SH3PXD2A Missense_Mutation p.Q1021H 0.44 tolerated(0.11) probably_damaging(0.997) TCGA-67-3770-01 10 11047364 11047364 A G RP1-251M9.3 3'Flank 0.11 TCGA-67-3770-01 10 118357646 118357646 C T PNLIPRP1 Missense_Mutation p.S261F 0.37 deleterious(0.02) benign(0.107) TCGA-67-3770-01 10 129904904 129904904 T A MKI67 Nonsense_Mutation p.K1734* 0.42 TCGA-67-3770-01 10 18948604 18948604 G T ARL5B Missense_Mutation p.C13F 0.29 deleterious(0.01) benign(0.001) TCGA-67-3770-01 10 50531828 50531828 C T C10orf71 Missense_Mutation p.T413I 0.06 deleterious(0.05) benign(0.286) TCGA-67-3770-01 10 50916417 50916417 C A C10orf53 Silent p.T76T 0.32 TCGA-67-3770-01 10 50946023 50946023 G A OGDHL Silent p.R829R 0.18 TCGA-67-3770-01 10 69882001 69882001 C T MYPN Missense_Mutation p.P269L 0.17 deleterious(0) probably_damaging(1) TCGA-67-3770-01 10 73270728 73270728 C A CDH23-AS1 Intron 0.31 TCGA-67-3770-01 10 91061832 91061832 A T IFIT2 5'UTR 0.32 TCGA-67-3770-01 10 98146807 98146807 G T TLL2 Missense_Mutation p.H585Q 0.39 tolerated(0.09) benign(0.009) TCGA-67-3770-01 11 105481708 105481708 G C GRIA4 5'UTR 0.35 TCGA-67-3770-01 11 105481709 105481709 G T GRIA4 5'UTR 0.34 TCGA-67-3770-01 11 19955796 19955796 C A NAV2 Missense_Mutation p.T692N 0.26 deleterious(0) probably_damaging(0.997) TCGA-67-3770-01 11 20177828 20177828 G T DBX1 Missense_Mutation p.P361T 0.32 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-67-3770-01 11 4944698 4944698 G T OR51G1 Missense_Mutation p.P291H 0.27 deleterious(0) probably_damaging(1) TCGA-67-3770-01 11 5173255 5173255 G A OR52A1 Silent p.G115G 0.29 TCGA-67-3770-01 11 5221796 5221796 G T OR51V1 Silent p.A45A 0.23 TCGA-67-3770-01 11 5411400 5411400 T A OR51M1 Missense_Mutation p.C258S 0.27 tolerated(0.15) benign(0.033) TCGA-67-3770-01 11 55433035 55433035 G C OR4C6 Silent p.T131T 0.23 TCGA-67-3770-01 11 56000141 56000141 C A OR5T2 Missense_Mutation p.S174I 0.28 tolerated(0.44) benign(0.022) TCGA-67-3770-01 11 6048560 6048560 C A OR56A1 Missense_Mutation p.M125I 0.31 deleterious(0.02) possibly_damaging(0.885) TCGA-67-3770-01 11 64695897 64695897 G T PPP2R5B Missense_Mutation p.R241L 0.33 deleterious(0.01) probably_damaging(0.966) TCGA-67-3770-01 11 6898596 6898596 T G OR10A4 Missense_Mutation p.S240A 0.14 deleterious(0) probably_damaging(0.999) TCGA-67-3770-01 11 74716538 74716538 G A NEU3 Silent p.K129K 0.36 TCGA-67-3770-01 11 804256 804256 C A PIDD Missense_Mutation p.G45W 0.05 deleterious(0.02) benign(0.029) TCGA-67-3770-01 11 92531939 92531939 C G FAT3 Nonsense_Mutation p.Y1920* 0.30 TCGA-67-3770-01 11 92623916 92623916 C A FAT3 Silent p.S4469S 0.35 TCGA-67-3770-01 12 108686420 108686420 A G CMKLR1 Missense_Mutation p.F107S 0.29 deleterious(0) probably_damaging(1) TCGA-67-3770-01 12 111786210 111786210 G A CUX2 3'UTR 0.37 TCGA-67-3770-01 12 132510236 132510236 G T EP400 Missense_Mutation p.R1634L 0.36 unknown(0) TCGA-67-3770-01 12 133256576 133256576 T C POLE Silent p.A129A 0.31 TCGA-67-3770-01 12 21788434 21788434 C A LDHB 3'UTR 0.28 TCGA-67-3770-01 12 44781901 44781901 G C TMEM117 Missense_Mutation p.G331R 0.23 deleterious(0) probably_damaging(1) TCGA-67-3770-01 12 45568239 45568239 C A PLEKHA8P1 RNA 0.28 TCGA-67-3770-01 12 49463563 49463563 C A RHEBL1 Silent p.P2P 0.34 TCGA-67-3770-01 12 51279140 51279140 G A TMPRSS12 Missense_Mutation p.G255D 0.25 deleterious(0) probably_damaging(0.996) TCGA-67-3770-01 12 52761049 52761049 C T KRT85 Silent p.G47G 0.32 TCGA-67-3770-01 12 53189527 53189527 G T KRT3 Silent p.G100G 0.33 TCGA-67-3770-01 12 54925554 54925554 C A NCKAP1L Missense_Mutation p.T909N 0.20 deleterious(0.02) possibly_damaging(0.737) TCGA-67-3770-01 12 58023958 58023958 T C B4GALNT1 Missense_Mutation p.Y230C 0.21 deleterious(0) possibly_damaging(0.847) TCGA-67-3770-01 12 72038818 72038818 T A ZFC3H1 Missense_Mutation p.Q373L 0.19 tolerated(0.27) possibly_damaging(0.629) TCGA-67-3770-01 12 91348044 91348044 G T CCER1 Missense_Mutation p.P159Q 0.11 tolerated(0.35) possibly_damaging(0.646) TCGA-67-3770-01 12 99837534 99837534 T G ANKS1B Missense_Mutation p.S498R 0.35 tolerated(0.29) possibly_damaging(0.68) TCGA-67-3770-01 13 110862504 110862504 C G COL4A1 Missense_Mutation p.R175T 0.44 unknown(0) TCGA-67-3770-01 13 25144805 25144805 C A RP11-556N21.1 RNA 0.18 TCGA-67-3770-01 13 44971453 44971453 G T SERP2 3'UTR 0.29 TCGA-67-3770-01 14 20443793 20443793 T A OR4K15 Missense_Mutation p.L39Q 0.24 deleterious(0.05) probably_damaging(0.933) TCGA-67-3770-01 14 23421768 23421768 T C HAUS4 Silent p.L60L 0.37 TCGA-67-3770-01 14 23887584 23887584 G A MYH7 Missense_Mutation p.S1335L 0.15 deleterious(0) probably_damaging(0.983) TCGA-67-3770-01 14 50877348 50877348 C G CDKL1 RNA 0.32 TCGA-67-3770-01 14 57960335 57960335 A G C14orf105 Silent p.F33F 0.24 TCGA-67-3770-01 14 64484334 64484336 TAC - SYNE2 In_Frame_Del p.Y1638del 0.28 TCGA-67-3770-01 14 99641683 99641683 G A BCL11B Missense_Mutation p.S497F 0.42 deleterious(0) probably_damaging(0.974) TCGA-67-3770-01 15 27128556 27128556 C T GABRA5 Missense_Mutation p.R117C 0.31 deleterious(0.01) probably_damaging(0.959) TCGA-67-3770-01 15 28326973 28326973 C A OCA2 Silent p.A16A 0.48 TCGA-67-3770-01 15 28424343 28424343 T C HERC2 Silent p.T2988T 0.38 TCGA-67-3770-01 15 34648810 34648810 T C NUTM1 Silent p.G839G 0.12 TCGA-67-3770-01 16 18823123 18823123 C A SMG1 Missense_Mutation p.R3623L 0.31 deleterious(0.01) probably_damaging(0.987) TCGA-67-3770-01 16 19087069 19087069 G T COQ7 Nonsense_Mutation p.E132* 0.13 TCGA-67-3770-01 16 19871805 19871805 C T GPRC5B 3'UTR 0.12 TCGA-67-3770-01 16 29708623 29708623 C A QPRT Missense_Mutation p.P262Q 0.49 tolerated(0.14) probably_damaging(0.967) TCGA-67-3770-01 16 31273080 31273080 G T ITGAM Missense_Mutation p.R32S 0.29 tolerated(0.36) benign(0.009) TCGA-67-3770-01 16 55361675 55361675 C A IRX6 Missense_Mutation p.F197L 0.26 deleterious(0) probably_damaging(0.998) TCGA-67-3770-01 16 56396498 56396498 G T AMFR 3'UTR 0.27 TCGA-67-3770-01 16 81187704 81187704 G C PKD1L2 RNA 0.31 TCGA-67-3770-01 17 3385072 3385072 C T ASPA Nonsense_Mutation p.Q138* 0.41 TCGA-67-3770-01 17 38192396 38192396 G A MED24 Silent p.Y75Y 0.26 TCGA-67-3770-01 17 39620561 39620561 C A KRT32 Missense_Mutation p.R281S 0.30 deleterious(0) possibly_damaging(0.572) TCGA-67-3770-01 17 41954991 41954991 G A MPP2 3'UTR 0.31 TCGA-67-3770-01 17 4857038 4857038 G T ENO3 Silent p.V114V 0.50 TCGA-67-3770-01 17 51900791 51900791 G T KIF2B Missense_Mutation p.V133L 0.28 tolerated(0.57) benign(0.004) TCGA-67-3770-01 17 56270454 56270454 G C EPX Missense_Mutation p.K44N 0.29 deleterious(0) probably_damaging(0.951) TCGA-67-3770-01 17 6704148 6704148 G C TEKT1 Missense_Mutation p.R323G 0.39 deleterious(0) probably_damaging(1) TCGA-67-3770-01 17 6704149 6704149 G T TEKT1 Missense_Mutation p.H322Q 0.39 tolerated(0.33) benign(0.004) TCGA-67-3770-01 17 67300882 67300882 T C ABCA5 Silent p.T286T 0.29 TCGA-67-3770-01 17 72368476 72368476 G C GPR142 Missense_Mutation p.V376L 0.33 tolerated(0.08) probably_damaging(0.999) TCGA-67-3770-01 17 72877234 72877234 C A FADS6 Silent p.L230L 0.20 TCGA-67-3770-01 17 7578469 7578469 C A TP53 Missense_Mutation p.G154V 0.41 deleterious(0) probably_damaging(0.961) TCGA-67-3770-01 17 7592605 7592605 C T WRAP53 Silent p.S165S 0.45 TCGA-67-3770-01 17 76060929 76060929 G A TNRC6C Missense_Mutation p.G838D 0.12 deleterious(0.03) probably_damaging(0.931) TCGA-67-3770-01 19 12951309 12951309 A T MAST1 Missense_Mutation p.T45S 0.30 deleterious(0) probably_damaging(0.96) TCGA-67-3770-01 19 12976793 12976793 G T MAST1 Splice_Site p.X636_splice 0.19 TCGA-67-3770-01 19 15651310 15651310 G T CYP4F22 Missense_Mutation p.V241F 0.22 tolerated(0.34) probably_damaging(0.999) TCGA-67-3770-01 19 16060247 16060247 C G OR10H4 Missense_Mutation p.H144D 0.22 tolerated(0.08) benign(0.063) TCGA-67-3770-01 19 17643134 17643134 G T FAM129C Silent p.R114R 0.22 TCGA-67-3770-01 19 19033422 19033422 C T DDX49 Silent p.T215T 0.22 TCGA-67-3770-01 19 22154060 22154060 C A ZNF208 Missense_Mutation p.G1259V 0.17 deleterious(0) possibly_damaging(0.884) TCGA-67-3770-01 19 35500129 35500129 A G GRAMD1A Missense_Mutation p.T39A 0.58 tolerated(0.43) unknown(0) TCGA-67-3770-01 19 4168422 4168422 G A CREB3L3 Silent p.K263K 0.18 TCGA-67-3770-01 19 43359723 43359723 C A PSG10P RNA 0.51 TCGA-67-3770-01 19 43359724 43359724 C A PSG10P RNA 0.52 TCGA-67-3770-01 19 4859660 4859660 T C PLIN3 Missense_Mutation p.H97R 0.17 tolerated(0.13) possibly_damaging(0.516) TCGA-67-3770-01 19 49983708 49983708 G A FLT3LG Missense_Mutation p.R212Q 0.29 tolerated(0.55) benign(0.238) TCGA-67-3770-01 19 52149131 52149131 G T SIGLEC14 Missense_Mutation p.P202T 0.52 deleterious(0) probably_damaging(0.998) TCGA-67-3770-01 19 53208559 53208559 G C ZNF611 Missense_Mutation p.C583W 0.47 tolerated(0.18) possibly_damaging(0.855) TCGA-67-3770-01 19 54742922 54742922 C A LILRA6 Missense_Mutation p.M451I 0.39 tolerated(0.05) benign(0.005) TCGA-67-3770-01 19 54778428 54778428 A G LILRB2 3'UTR 0.57 TCGA-67-3770-01 19 55716908 55716908 G T PTPRH Silent p.I135I 0.48 TCGA-67-3770-01 19 56443508 56443508 C A NLRP13 Missense_Mutation p.W57L 0.56 deleterious(0) probably_damaging(0.998) TCGA-67-3770-01 19 6535039 6535039 G C TNFSF9 Missense_Mutation p.E243Q 0.15 tolerated(0.56) benign(0.009) TCGA-67-3770-01 19 6935052 6935052 A T EMR1 Missense_Mutation p.S782C 0.21 deleterious(0.01) possibly_damaging(0.548) TCGA-67-3770-01 19 9021116 9021116 C A MUC16 Nonsense_Mutation p.E12403* 0.14 TCGA-67-3770-01 19 9071071 9071071 G T MUC16 Missense_Mutation p.L5459M 0.22 unknown(0) TCGA-67-3770-01 1 10093697 10093697 C G UBE4B 5'UTR 0.70 TCGA-67-3770-01 1 144855788 144855788 C A PDE4DIP Missense_Mutation p.W2255C 0.19 deleterious(0) probably_damaging(0.992) TCGA-67-3770-01 1 148016411 148016411 G A NBPF14 Silent p.P283P 0.53 TCGA-67-3770-01 1 149915924 149915924 C A OTUD7B Missense_Mutation p.W788C 0.24 tolerated_low_confidence(0.11) benign(0.346) TCGA-67-3770-01 1 151140046 151140046 G T SCNM1 Intron 0.33 TCGA-67-3770-01 1 153012823 153012823 C T SPRR2D 5'UTR 0.31 TCGA-67-3770-01 1 156845459 156845459 G T NTRK1 Splice_Site p.X501_splice 0.33 TCGA-67-3770-01 1 158596702 158596702 C - SPTA1 Frame_Shift_Del p.W1920* 0.30 TCGA-67-3770-01 1 158622310 158622310 C A SPTA1 Missense_Mutation p.V1108L 0.27 tolerated(0.28) benign(0.058) TCGA-67-3770-01 1 161976113 161976113 C A OLFML2B Missense_Mutation p.A233S 0.28 tolerated(0.07) benign(0.083) TCGA-67-3770-01 1 175331945 175331945 A C TNR Missense_Mutation p.V903G 0.28 tolerated(0.6) possibly_damaging(0.572) TCGA-67-3770-01 1 181480554 181480554 G A CACNA1E Silent p.G140G 0.30 TCGA-67-3770-01 1 19564614 19564614 T C EMC1 Missense_Mutation p.N370S 0.25 tolerated(0.18) benign(0.012) TCGA-67-3770-01 1 197104226 197104226 C A ASPM Missense_Mutation p.V725L 0.20 deleterious(0) possibly_damaging(0.814) TCGA-67-3770-01 1 203743633 203743633 G T LAX1 Missense_Mutation p.A341S 0.30 tolerated(0.59) benign(0.009) TCGA-67-3770-01 1 212799160 212799160 G T FAM71A Missense_Mutation p.G314V 0.24 deleterious(0.04) benign(0.118) TCGA-67-3770-01 1 227218999 227218999 C G CDC42BPA Missense_Mutation p.D1224H 0.21 deleterious(0) probably_damaging(0.994) TCGA-67-3770-01 1 228492264 228492264 A G OBSCN Missense_Mutation p.R4755G 0.26 possibly_damaging(0.907) TCGA-67-3770-01 1 228548231 228548231 C G OBSCN Intron 0.43 TCGA-67-3770-01 1 232941151 232941151 T G MAP10 Missense_Mutation p.F128V 0.28 tolerated_low_confidence(0.2) possibly_damaging(0.504) TCGA-67-3770-01 1 237052487 237052487 C T MTR Missense_Mutation p.P953L 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-67-3770-01 1 237947310 237947310 G A RYR2 Missense_Mutation p.V4100I 0.09 probably_damaging(0.995) TCGA-67-3770-01 1 247978341 247978341 C T OR14A16 Missense_Mutation p.G231S 0.25 deleterious(0.05) probably_damaging(0.913) TCGA-67-3770-01 1 248059153 248059153 G T OR2W3 Missense_Mutation p.D89Y 0.34 deleterious(0) possibly_damaging(0.786) TCGA-67-3770-01 1 248616138 248616138 G A OR2T2 Missense_Mutation p.V14I 0.15 tolerated(1) benign(0) TCGA-67-3770-01 1 248616139 248616139 T G OR2T2 Missense_Mutation p.V14G 0.15 deleterious(0) benign(0.121) TCGA-67-3770-01 1 248757058 248757058 G T OR2T10 Silent p.A4A 0.25 TCGA-67-3770-01 1 248845133 248845133 G T OR14I1 Missense_Mutation p.T158N 0.26 deleterious(0) probably_damaging(0.997) TCGA-67-3770-01 1 27428248 27428248 G T SLC9A1 Silent p.R669R 0.68 TCGA-67-3770-01 1 34312507 34312507 G A CSMD2 Silent p.R297R 0.63 TCGA-67-3770-01 1 43907004 43907004 T C SZT2 Silent p.G2431G 0.66 TCGA-67-3770-01 1 6208958 6208958 G A CHD5 Silent p.L447L 0.65 TCGA-67-3770-01 20 23016506 23016506 A T SSTR4 Missense_Mutation p.N129I 0.61 deleterious(0) probably_damaging(1) TCGA-67-3770-01 20 3684492 3684492 G A SIGLEC1 Missense_Mutation p.P318L 0.39 deleterious(0.01) probably_damaging(0.953) TCGA-67-3770-01 20 36964032 36964032 C A BPI Missense_Mutation p.P461T 0.41 tolerated(0.1) possibly_damaging(0.746) TCGA-67-3770-01 20 37126007 37126007 G T RALGAPB Missense_Mutation p.G134V 0.40 tolerated(0.32) benign(0.011) TCGA-67-3770-01 20 50092041 50092041 T C NFATC2 Missense_Mutation p.K497E 0.46 deleterious(0) probably_damaging(0.995) TCGA-67-3770-01 20 62729409 62729409 C A OPRL1 Missense_Mutation p.T163K 0.43 tolerated(0.3) probably_damaging(1) TCGA-67-3770-01 20 825669 825669 G T FAM110A Missense_Mutation p.Q74H 0.17 deleterious(0.04) probably_damaging(0.996) TCGA-67-3770-01 21 10862958 10862958 C A IGHV1OR21-1 Missense_Mutation p.A85D 0.12 tolerated(0.11) benign(0.001) TCGA-67-3770-01 21 10910395 10910395 A T TPTE Missense_Mutation p.L454H 0.20 tolerated(0.15) benign(0.035) TCGA-67-3770-01 21 11049524 11049524 G T BAGE2 RNA 0.32 TCGA-67-3770-01 21 46935678 46935678 T A SLC19A1 Missense_Mutation p.E557V 0.23 deleterious_low_confidence(0) benign(0.014) TCGA-67-3770-01 21 47699995 47699995 T C MCM3AP Missense_Mutation p.S527G 0.32 tolerated(0.42) benign(0.001) TCGA-67-3770-01 22 37964344 37964344 C T CDC42EP1 Silent p.P231P 0.32 TCGA-67-3770-01 22 44586474 44586474 G - PARVG Frame_Shift_Del p.A145Pfs*30 0.19 TCGA-67-3770-01 2 108994680 108994680 G A SULT1C4 5'UTR 0.69 TCGA-67-3770-01 2 119727780 119727780 T A MARCO Missense_Mutation p.L97Q 0.64 deleterious(0.02) probably_damaging(0.979) TCGA-67-3770-01 2 121747600 121747600 G T GLI2 Missense_Mutation p.Q1370H 0.65 deleterious(0.02) probably_damaging(0.986) TCGA-67-3770-01 2 171257993 171257993 G T MYO3B Missense_Mutation p.A641S 0.60 tolerated(0.29) possibly_damaging(0.888) TCGA-67-3770-01 2 179472803 179472803 G A TTN Missense_Mutation p.P17571S 0.07 TCGA-67-3770-01 2 196636546 196636546 C A DNAH7 Missense_Mutation p.L3757F 0.60 deleterious(0) probably_damaging(0.982) TCGA-67-3770-01 2 202593271 202593271 C A ALS2 Missense_Mutation p.W935C 0.58 deleterious(0) probably_damaging(0.96) TCGA-67-3770-01 2 202609145 202609145 T C ALS2 Missense_Mutation p.Y669C 0.60 deleterious(0) probably_damaging(0.971) TCGA-67-3770-01 2 20824527 20824527 G T HS1BP3 Missense_Mutation p.P250Q 0.10 deleterious(0.02) benign(0.02) TCGA-67-3770-01 2 211473091 211473091 A G CPS1 Silent p.P739P 0.61 TCGA-67-3770-01 2 219920175 219920175 G A IHH Silent p.A330A 0.61 TCGA-67-3770-01 2 69034512 69034512 G T ARHGAP25 Missense_Mutation p.G192C 0.29 deleterious(0) probably_damaging(0.999) TCGA-67-3770-01 2 73901983 73901983 C G ALMS1P RNA 0.44 TCGA-67-3770-01 2 86997154 86997154 C G RMND5A Missense_Mutation p.A288G 0.32 deleterious(0.01) possibly_damaging(0.697) TCGA-67-3770-01 3 10382279 10382279 G A ATP2B2 Silent p.N1009N 0.19 TCGA-67-3770-01 3 124731954 124731954 G A HEG1 Silent p.S823S 0.32 TCGA-67-3770-01 3 125313780 125313780 G A OSBPL11 5'UTR 0.17 TCGA-67-3770-01 3 128292256 128292256 T C C3orf27 Missense_Mutation p.H106R 0.33 benign(0.402) TCGA-67-3770-01 3 141259374 141259374 G T RASA2 Splice_Site p.X151_splice 0.35 TCGA-67-3770-01 3 1427297 1427297 C A CNTN6 Silent p.V840V 0.12 TCGA-67-3770-01 3 151164070 151164070 C T IGSF10 Silent p.V1233V 0.36 TCGA-67-3770-01 3 167728078 167728078 T C GOLIM4 Silent p.S690S 0.20 TCGA-67-3770-01 3 195711454 195711454 C A SDHAP1 RNA 0.10 TCGA-67-3770-01 3 195711455 195711455 C A SDHAP1 RNA 0.10 TCGA-67-3770-01 3 20167606 20167606 G T KAT2B Splice_Site p.X541_splice 0.29 TCGA-67-3770-01 3 45038682 45038682 G T EXOSC7 Missense_Mutation p.D120Y 0.34 deleterious(0) probably_damaging(1) TCGA-67-3770-01 3 48726111 48726111 G A IP6K2 Silent p.F292F 0.15 TCGA-67-3770-01 3 52584605 52584605 C A PBRM1 Missense_Mutation p.G1470C 0.21 deleterious(0.01) benign(0.076) TCGA-67-3770-01 3 52794870 52794870 T A NEK4 Missense_Mutation p.N302Y 0.37 deleterious(0) benign(0.344) TCGA-67-3770-01 3 64133210 64133210 G T PRICKLE2 Missense_Mutation p.S319Y 0.18 deleterious(0) probably_damaging(0.998) TCGA-67-3770-01 3 97868644 97868644 G T OR5H14 Nonsense_Mutation p.G139* 0.38 TCGA-67-3770-01 4 119659495 119659495 C A SEC24D Missense_Mutation p.R806L 0.33 deleterious(0.02) benign(0.088) TCGA-67-3770-01 4 123229169 123229169 C A KIAA1109 Missense_Mutation p.H3303N 0.31 benign(0.001) TCGA-67-3770-01 4 139100436 139100436 C A SLC7A11 Missense_Mutation p.G460V 0.34 deleterious(0) probably_damaging(0.994) TCGA-67-3770-01 4 38831004 38831004 C A TLR6 Nonsense_Mutation p.G31* 0.32 TCGA-67-3770-01 4 42003698 42003698 G C SLC30A9 Missense_Mutation p.G59R 0.21 tolerated_low_confidence(0.35) benign(0) TCGA-67-3770-01 4 4458978 4458978 C G STX18 Missense_Mutation p.C146S 0.32 tolerated(0.06) possibly_damaging(0.474) TCGA-67-3770-01 4 55129867 55129867 C T PDGFRA Missense_Mutation p.T134M 0.30 tolerated(0.16) benign(0.009) TCGA-67-3770-01 4 85414499 85414499 G C NKX6-1 Missense_Mutation p.S349R 0.28 deleterious(0.03) unknown(0) TCGA-67-3770-01 5 102508881 102508881 A G PPIP5K2 Missense_Mutation p.E770G 0.59 deleterious(0.02) probably_damaging(0.984) TCGA-67-3770-01 5 134785501 134785501 G T TIFAB Missense_Mutation p.D43E 0.64 tolerated(0.17) benign(0.241) TCGA-67-3770-01 5 137722285 137722285 G A KDM3B Missense_Mutation p.G452D 0.22 tolerated_low_confidence(0.25) benign(0.024) TCGA-67-3770-01 5 140719811 140719811 A G PCDHGA2 Missense_Mutation p.K425E 0.28 deleterious_low_confidence(0.03) benign(0.07) TCGA-67-3770-01 5 167489067 167489067 C A TENM2 Missense_Mutation p.P438T 0.23 tolerated(0.32) benign(0.077) TCGA-67-3770-01 5 168098448 168098448 G T SLIT3 Silent p.G1294G 0.69 TCGA-67-3770-01 5 175763780 175763780 C A SIMC1 Silent p.I309I 0.69 TCGA-67-3770-01 5 1879706 1879706 G T IRX4 Missense_Mutation p.D216E 0.15 tolerated(0.4) benign(0.023) TCGA-67-3770-01 5 21842294 21842294 C A CDH12 Missense_Mutation p.D264Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-67-3770-01 5 32048735 32048735 G T PDZD2 Missense_Mutation p.R537L 0.18 deleterious(0) probably_damaging(0.999) TCGA-67-3770-01 5 353963 353963 C G AHRR Missense_Mutation p.L65V 0.27 deleterious(0) probably_damaging(1) TCGA-67-3770-01 5 40798230 40798230 C A PRKAA1 Missense_Mutation p.R21L 0.32 tolerated(0.37) benign(0.313) TCGA-67-3770-01 5 60188174 60188174 C A ERCC8 Intron 0.29 TCGA-67-3770-01 5 65077169 65077169 A G NLN Missense_Mutation p.Y248C 0.52 deleterious(0) probably_damaging(0.996) TCGA-67-3770-01 5 78325854 78325854 C A DMGDH Missense_Mutation p.G563C 0.24 deleterious(0) probably_damaging(0.998) TCGA-67-3770-01 5 89920950 89920950 G T GPR98 Nonsense_Mutation p.E188* 0.58 TCGA-67-3770-01 5 96506952 96506952 T A RIOK2 Missense_Mutation p.D246V 0.26 deleterious(0) probably_damaging(0.999) TCGA-67-3770-01 6 106553068 106553069 - A PRDM1 Frame_Shift_Ins p.S346Kfs*78 0.24 TCGA-67-3770-01 6 135239890 135239890 G A ALDH8A1 Missense_Mutation p.T376M 0.16 deleterious(0) probably_damaging(0.999) TCGA-67-3770-01 6 150057694 150057694 T C NUP43 Missense_Mutation p.T235A 0.21 tolerated(0.11) possibly_damaging(0.802) TCGA-67-3770-01 6 169623382 169623382 G T THBS2 Missense_Mutation p.L988M 0.27 deleterious(0) probably_damaging(1) TCGA-67-3770-01 6 29323725 29323725 A G OR5V1 Missense_Mutation p.V83A 0.10 tolerated(0.56) benign(0.006) TCGA-67-3770-01 6 43516038 43516038 C A XPO5 Missense_Mutation p.A674S 0.05 tolerated(0.38) benign(0.005) TCGA-67-3770-01 6 47775990 47775990 A T OPN5 Missense_Mutation p.Q286L 0.24 tolerated(0.55) benign(0.08) TCGA-67-3770-01 6 49989652 49989652 A G DEFB110 5'UTR 0.28 TCGA-67-3770-01 6 50811154 50811154 A C TFAP2B 3'UTR 0.33 TCGA-67-3770-01 6 90605805 90605805 A - GJA10 Frame_Shift_Del p.K540Nfs*? 0.19 TCGA-67-3770-01 7 100681561 100681561 C G MUC17 Missense_Mutation p.H2288Q 0.34 unknown(0) TCGA-67-3770-01 7 100682066 100682066 C A MUC17 Missense_Mutation p.P2457T 0.18 probably_damaging(0.93) TCGA-67-3770-01 7 102937953 102937953 G T PMPCB Missense_Mutation p.R16L 0.38 tolerated(0.68) unknown(0) TCGA-67-3770-01 7 106898754 106898754 C A COG5 Silent p.V581V 0.33 TCGA-67-3770-01 7 123197914 123197914 C A NDUFA5 5'UTR 0.22 TCGA-67-3770-01 7 128496848 128496848 C A FLNC Silent p.I2478I 0.35 TCGA-67-3770-01 7 134261164 134261164 C A AKR1B15 Missense_Mutation p.H269Q 0.16 deleterious(0.01) probably_damaging(0.969) TCGA-67-3770-01 7 140380905 140380905 G C ADCK2 Missense_Mutation p.A425P 0.29 deleterious(0) probably_damaging(0.946) TCGA-67-3770-01 7 151664369 151664369 C A GALNTL5 Missense_Mutation p.S13Y 0.16 deleterious(0.04) possibly_damaging(0.538) TCGA-67-3770-01 7 151962197 151962197 G T KMT2C Nonsense_Mutation p.C370* 0.21 TCGA-67-3770-01 7 15601381 15601381 G C AGMO Missense_Mutation p.F30L 0.28 deleterious(0) probably_damaging(0.912) TCGA-67-3770-01 7 31013682 31013682 T A GHRHR Missense_Mutation p.L227Q 0.27 deleterious(0) probably_damaging(0.971) TCGA-67-3770-01 7 31690852 31690852 C T CCDC129 Missense_Mutation p.L920F 0.30 tolerated(0.06) benign(0.088) TCGA-67-3770-01 7 31864557 31864557 C A PDE1C Missense_Mutation p.D504Y 0.25 deleterious(0) probably_damaging(0.996) TCGA-67-3770-01 7 31864558 31864558 C A PDE1C Silent p.T503T 0.25 TCGA-67-3770-01 7 55259515 55259515 T G EGFR Missense_Mutation p.L858R 0.25 deleterious(0) probably_damaging(1) TCGA-67-3770-01 7 57188147 57188147 G C ZNF479 Missense_Mutation p.C325W 0.25 deleterious(0) benign(0.319) TCGA-67-3770-01 7 82764395 82764395 G A PCLO Missense_Mutation p.P824L 0.37 unknown(0) TCGA-67-3770-01 7 91667886 91667886 A G AKAP9 Missense_Mutation p.I1498V 0.45 benign(0) TCGA-67-3770-01 7 98449098 98449098 C T TMEM130 Missense_Mutation p.E318K 0.36 tolerated(0.05) possibly_damaging(0.88) TCGA-67-3770-01 8 104709469 104709469 G C RIMS2 Missense_Mutation p.C111S 0.18 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-67-3770-01 8 113988081 113988081 C A CSMD3 Missense_Mutation p.V443F 0.25 tolerated(0.4) benign(0.005) TCGA-67-3770-01 8 114186033 114186033 G A CSMD3 Silent p.I209I 0.16 TCGA-67-3770-01 8 126011616 126011616 G T SQLE 5'UTR 0.49 TCGA-67-3770-01 9 101235551 101235551 C A GABBR2 Missense_Mutation p.Q292H 0.41 tolerated(0.12) benign(0.013) TCGA-67-3770-01 9 104335780 104335780 G T GRIN3A Silent p.P1008P 0.43 TCGA-67-3770-01 9 112018498 112018498 C A EPB41L4B Missense_Mutation p.D283Y 0.35 deleterious(0) probably_damaging(1) TCGA-67-3770-01 9 23701585 23701585 C A ELAVL2 Missense_Mutation p.G169W 0.43 deleterious(0) probably_damaging(0.957) TCGA-67-3770-01 9 6329037 6329037 G T TPD52L3 3'UTR 0.30 TCGA-67-3770-01 X 100613339 100613339 G A BTK Missense_Mutation p.T354I 0.31 deleterious(0) possibly_damaging(0.751) TCGA-67-3770-01 X 101572217 101572217 C T NXF2 Intron 0.33 TCGA-67-3770-01 X 105011313 105011313 G A IL1RAPL2 Missense_Mutation p.E574K 0.28 deleterious(0.02) possibly_damaging(0.813) TCGA-67-3770-01 X 105132286 105132286 G T NRK Splice_Site p.X85_splice 0.20 TCGA-67-3770-01 X 105189911 105189911 T C NRK Silent p.Y1370Y 0.14 TCGA-67-3770-01 X 110496262 110496262 A G CAPN6 Silent p.N160N 0.29 TCGA-67-3770-01 X 115593061 115593061 A G CT83 Silent p.S63S 0.34 TCGA-67-3770-01 X 118763133 118763133 G C SEPT6 Intron 0.28 TCGA-67-3770-01 X 128957764 128957764 G A ZDHHC9 Silent p.I126I 0.06 TCGA-67-3770-01 X 129264072 129264072 G A AIFM1 Missense_Mutation p.P548L 0.32 tolerated(0.05) benign(0.001) TCGA-67-3770-01 X 133559478 133559478 C A PHF6 3'UTR 0.18 TCGA-67-3770-01 X 135318499 135318499 C A MAP7D3 Splice_Site p.X214_splice 0.31 TCGA-67-3770-01 X 148564704 148564704 G A IDS Missense_Mutation p.T198M 0.28 deleterious(0) probably_damaging(0.995) TCGA-67-3770-01 X 149101918 149101918 C A CXorf40B Nonsense_Mutation p.E59* 0.21 TCGA-67-3770-01 X 151899874 151899874 A G MAGEA12 Silent p.F309F 0.32 TCGA-67-3770-01 X 153171455 153171455 C A AVPR2 Silent p.A165A 0.29 TCGA-67-3770-01 X 154158393 154158393 G T F8 Silent p.I1224I 0.24 TCGA-67-3770-01 X 19028759 19028759 G T GPR64 Missense_Mutation p.P413T 0.32 tolerated(0.17) benign(0.197) TCGA-67-3770-01 X 21674559 21674559 G A KLHL34 Missense_Mutation p.R450W 0.58 deleterious(0.04) benign(0.006) TCGA-67-3770-01 X 27997129 27997129 C T DCAF8L1 3'UTR 0.37 TCGA-67-3770-01 X 30254445 30254445 C A MAGEB3 Missense_Mutation p.A135E 0.27 tolerated(0.46) benign(0.023) TCGA-67-3770-01 X 30327006 30327006 C A NR0B1 Missense_Mutation p.A159S 0.31 tolerated_low_confidence(0.1) benign(0.207) TCGA-67-3770-01 X 38145111 38145111 T C RPGR Silent p.E1047E 0.38 TCGA-67-3770-01 X 47041662 47041663 - G RBM10 Frame_Shift_Ins p.A631Gfs*42 0.32 TCGA-67-3770-01 X 47107098 47107098 G T USP11 Missense_Mutation p.E918D 0.32 deleterious(0.03) benign(0.411) TCGA-67-3770-01 X 49032419 49032419 C A PRICKLE3 Missense_Mutation p.G484V 0.36 deleterious_low_confidence(0.02) possibly_damaging(0.66) TCGA-67-3770-01 X 54841728 54841728 G - MAGED2 Frame_Shift_Del p.M479Wfs*5 0.27 TCGA-67-3770-01 X 5811180 5811180 C G NLGN4X Missense_Mutation p.R710P 0.26 deleterious(0.01) probably_damaging(0.986) TCGA-67-3770-01 X 65420411 65420411 C T HEPH Missense_Mutation p.P686S 0.41 deleterious(0) probably_damaging(1) TCGA-67-3770-01 X 67943666 67943666 C T STARD8 Missense_Mutation p.R1000C 0.12 deleterious(0.04) probably_damaging(0.941) TCGA-67-3770-01 X 69282756 69282756 G C OTUD6A Missense_Mutation p.E128Q 0.27 deleterious(0) probably_damaging(1) TCGA-67-3770-01 X 75648524 75648524 C T MAGEE1 Silent p.S67S 0.23 TCGA-67-3770-01 X 99551355 99551355 G T PCDH19 Missense_Mutation p.H1123N 0.30 deleterious_low_confidence(0.02) benign(0.017) TCGA-67-3771-01 10 102039910 102039910 T C BLOC1S2 Missense_Mutation p.Y123C 0.13 deleterious(0) probably_damaging(0.997) TCGA-67-3771-01 10 102509593 102509593 C - PAX2 Frame_Shift_Del p.H46Tfs*37 0.12 TCGA-67-3771-01 10 102763856 102763856 G A LZTS2 Missense_Mutation p.R334Q 0.18 deleterious(0.01) benign(0.103) TCGA-67-3771-01 10 103870845 103870845 C A LDB1 Missense_Mutation p.R77L 0.18 deleterious(0) benign(0.316) TCGA-67-3771-01 10 112838147 112838147 C G ADRA2A Missense_Mutation p.F131L 0.19 deleterious(0) probably_damaging(0.969) TCGA-67-3771-01 10 11505373 11505373 G T USP6NL Silent p.T535T 0.48 TCGA-67-3771-01 10 115540407 115540407 A G PLEKHS1 3'Flank 0.17 TCGA-67-3771-01 10 116925403 116925403 C G ATRNL1 Missense_Mutation p.Q364E 0.13 tolerated(0.55) benign(0.243) TCGA-67-3771-01 10 118220677 118220677 C T PNLIPRP3 Intron 0.14 TCGA-67-3771-01 10 119043108 119043108 C T PDZD8 Missense_Mutation p.E1046K 0.20 deleterious(0) probably_damaging(0.997) TCGA-67-3771-01 10 122263423 122263423 T A PPAPDC1A Silent p.P50P 0.25 TCGA-67-3771-01 10 124377590 124377590 G T DMBT1 Missense_Mutation p.R1521L 0.17 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 10 125506268 125506268 G A CPXM2 3'UTR 0.15 TCGA-67-3771-01 10 127782626 127782626 T A ADAM12 Missense_Mutation p.D361V 0.16 deleterious(0) probably_damaging(1) TCGA-67-3771-01 10 128191331 128191331 C A C10orf90 Intron 0.10 TCGA-67-3771-01 10 129903116 129903116 T A MKI67 Nonsense_Mutation p.K2330* 0.28 TCGA-67-3771-01 10 134648922 134648922 C T TTC40 Missense_Mutation p.M2210I 0.22 tolerated(0.33) benign(0.001) TCGA-67-3771-01 10 13702486 13702486 T A FRMD4A Silent p.P576P 0.45 TCGA-67-3771-01 10 14563219 14563219 G C FAM107B Silent p.G297G 0.37 TCGA-67-3771-01 10 14939210 14939210 C T SUV39H2 Silent p.I181I 0.16 TCGA-67-3771-01 10 15103747 15103747 G T OLAH Missense_Mutation p.R116I 0.41 deleterious(0) probably_damaging(0.996) TCGA-67-3771-01 10 15138469 15138469 G A C10orf111 Missense_Mutation p.L119F 0.43 tolerated_low_confidence(0.14) probably_damaging(0.982) TCGA-67-3771-01 10 15210517 15210517 G C NMT2 Missense_Mutation p.T32R 0.11 tolerated_low_confidence(0.38) benign(0.091) TCGA-67-3771-01 10 15760843 15760843 C T ITGA8 Missense_Mutation p.E89K 0.18 deleterious(0) possibly_damaging(0.844) TCGA-67-3771-01 10 25861687 25861687 A C GPR158 Missense_Mutation p.I542L 0.33 deleterious(0.05) benign(0.016) TCGA-67-3771-01 10 25887236 25887236 C A GPR158 Missense_Mutation p.P894Q 0.18 deleterious(0.04) benign(0.196) TCGA-67-3771-01 10 30918542 30918542 G T LYZL2 Silent p.G31G 0.25 TCGA-67-3771-01 10 32103262 32103262 C A ARHGAP12 Nonsense_Mutation p.E587* 0.32 TCGA-67-3771-01 10 38126615 38126615 C T ZNF248 Silent p.V56V 0.11 TCGA-67-3771-01 10 3822343 3822343 C G KLF6 Missense_Mutation p.R252P 0.23 deleterious(0) probably_damaging(0.996) TCGA-67-3771-01 10 43292056 43292056 G T BMS1 Missense_Mutation p.G455V 0.16 tolerated(0.2) benign(0.029) TCGA-67-3771-01 10 48414052 48414052 C G GDF2 Silent p.L272L 0.13 TCGA-67-3771-01 10 48428803 48428803 C T GDF10 Silent p.T361T 0.22 TCGA-67-3771-01 10 50679084 50679084 C G ERCC6 Missense_Mutation p.E1003Q 0.14 deleterious(0) probably_damaging(0.94) TCGA-67-3771-01 10 50943156 50943156 G C OGDHL 3'UTR 0.45 TCGA-67-3771-01 10 60566883 60566883 G T BICC1 Missense_Mutation p.V781L 0.29 tolerated(0.85) benign(0.254) TCGA-67-3771-01 10 61028318 61028318 A G FAM13C Missense_Mutation p.Y313H 0.40 deleterious(0) probably_damaging(1) TCGA-67-3771-01 10 61554281 61554281 T A CCDC6 Missense_Mutation p.N394Y 0.42 tolerated(0.09) benign(0.198) TCGA-67-3771-01 10 64159552 64159552 G C ZNF365 Intron 0.33 TCGA-67-3771-01 10 65357812 65357812 G A REEP3 Missense_Mutation p.A71T 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-67-3771-01 10 67829219 67829219 T A CTNNA3 Missense_Mutation p.E669V 0.23 deleterious(0.04) unknown(0) TCGA-67-3771-01 10 69651262 69651262 G C SIRT1 Missense_Mutation p.D298H 0.14 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 10 70406705 70406705 A G TET1 Missense_Mutation p.T1407A 0.21 tolerated(0.34) benign(0.007) TCGA-67-3771-01 10 70706206 70706206 G A DDX50 Silent p.Q678Q 0.11 TCGA-67-3771-01 10 71048521 71048521 G A HK1 Missense_Mutation p.E8K 0.11 tolerated_low_confidence(0.68) benign(0) TCGA-67-3771-01 10 71332433 71332433 C G NEUROG3 Missense_Mutation p.E123Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 10 72292391 72292391 C A PALD1 Silent p.A216A 0.17 TCGA-67-3771-01 10 72541683 72541683 G T TBATA Silent p.R51R 0.31 TCGA-67-3771-01 10 73501649 73501649 G T CDH23 Missense_Mutation p.V1611L 0.38 tolerated(0.06) possibly_damaging(0.888) TCGA-67-3771-01 10 74660219 74660219 G T OIT3 Missense_Mutation p.G174V 0.13 deleterious(0) probably_damaging(0.993) TCGA-67-3771-01 10 75095212 75095212 T C TTC18 Missense_Mutation p.Y288C 0.18 deleterious(0) probably_damaging(0.998) TCGA-67-3771-01 10 75565368 75565368 G C NDST2 Missense_Mutation p.Q575E 0.12 tolerated(1) benign(0) TCGA-67-3771-01 10 78651442 78651442 C G KCNMA1 Silent p.R1044R 0.26 TCGA-67-3771-01 10 87407335 87407335 A C GRID1 Intron 0.40 TCGA-67-3771-01 10 88476445 88476445 T A LDB3 Silent p.L536L 0.16 TCGA-67-3771-01 10 94828349 94828349 C T CYP26C1 Silent p.A488A 0.36 TCGA-67-3771-01 10 96447589 96447589 G T CYP2C18 Missense_Mutation p.L77F 0.32 deleterious(0.01) possibly_damaging(0.74) TCGA-67-3771-01 10 96454680 96454680 C T CYP2C18 Missense_Mutation p.P163L 0.39 deleterious(0.01) benign(0.322) TCGA-67-3771-01 10 97605318 97605318 C T ENTPD1 Nonsense_Mutation p.Q272* 0.16 TCGA-67-3771-01 10 98192565 98192566 - G TLL2 Frame_Shift_Ins p.G174Wfs*8 0.20 TCGA-67-3771-01 10 98807550 98807550 C T SLIT1 Missense_Mutation p.V511M 0.36 tolerated(0.12) benign(0.007) TCGA-67-3771-01 10 99212032 99212036 CCCAC - ZDHHC16 Frame_Shift_Del p.P145Gfs*4 0.14 TCGA-67-3771-01 11 101375108 101375108 G T TRPC6 Missense_Mutation p.Q198K 0.13 tolerated(0.26) benign(0.323) TCGA-67-3771-01 11 1025314 1025314 G T MUC6 Silent p.P951P 0.29 TCGA-67-3771-01 11 103908684 103908684 G T DDI1 Missense_Mutation p.E378D 0.09 tolerated(0.26) benign(0.001) TCGA-67-3771-01 11 107578452 107578452 C A SLN 3'UTR 0.31 TCGA-67-3771-01 11 107965125 107965125 G A CUL5 Missense_Mutation p.G484D 0.13 deleterious(0) probably_damaging(0.971) TCGA-67-3771-01 11 113103046 113103046 C G NCAM1 Missense_Mutation p.I514M 0.10 deleterious(0.04) possibly_damaging(0.872) TCGA-67-3771-01 11 113286152 113286152 A T DRD2 Silent p.A238A 0.17 TCGA-67-3771-01 11 113860407 113860407 A - HTR3A Frame_Shift_Del p.F492Sfs*6 0.14 TCGA-67-3771-01 11 114453161 114453161 C T NXPE4 Missense_Mutation p.A227T 0.08 tolerated(0.23) benign(0.097) TCGA-67-3771-01 11 116661394 116661394 G T APOA5 Missense_Mutation p.T184N 0.20 deleterious(0) probably_damaging(0.991) TCGA-67-3771-01 11 116691596 116691596 G A APOA4 Missense_Mutation p.P393L 0.19 deleterious_low_confidence(0) unknown(0) TCGA-67-3771-01 11 117395754 117395754 G T DSCAML1 Missense_Mutation p.Q295K 0.22 tolerated(0.59) benign(0.001) TCGA-67-3771-01 11 118362018 118362018 C A KMT2A Missense_Mutation p.L1602I 0.15 probably_damaging(0.997) TCGA-67-3771-01 11 118532435 118532435 G C TREH Missense_Mutation p.D176E 0.33 deleterious(0) probably_damaging(0.998) TCGA-67-3771-01 11 119170450 119170450 G T CBL Nonsense_Mutation p.E894* 0.40 TCGA-67-3771-01 11 119215663 119215663 G T MFRP Silent p.L231L 0.21 TCGA-67-3771-01 11 120916426 120916426 C T TBCEL Silent p.F9F 0.48 TCGA-67-3771-01 11 123601254 123601254 C T ZNF202 Missense_Mutation p.E115K 0.31 deleterious(0) probably_damaging(0.998) TCGA-67-3771-01 11 123893950 123893950 C A OR10G9 Silent p.P77P 0.10 TCGA-67-3771-01 11 123988412 123988412 A T VWA5A Missense_Mutation p.I26F 0.30 deleterious(0) probably_damaging(0.988) TCGA-67-3771-01 11 124294222 124294222 G T OR8B4 Silent p.P182P 0.18 TCGA-67-3771-01 11 1271377 1271377 G A MUC5B Missense_Mutation p.E4423K 0.20 benign(0.003) TCGA-67-3771-01 11 128634714 128634714 G A FLI1 Intron 0.33 TCGA-67-3771-01 11 129996686 129996686 G A APLP2 Silent p.K394K 0.32 TCGA-67-3771-01 11 134093889 134093889 T A NCAPD3 5'Flank 0.36 TCGA-67-3771-01 11 1475797 1475797 C T BRSK2 Silent p.L589L 0.16 TCGA-67-3771-01 11 18313334 18313334 C T HPS5 Missense_Mutation p.E699K 0.25 tolerated(0.26) benign(0.015) TCGA-67-3771-01 11 18316688 18316688 C T HPS5 Missense_Mutation p.E555K 0.22 tolerated(0.1) probably_damaging(0.92) TCGA-67-3771-01 11 18327041 18327041 C T HPS5 Splice_Site p.X275_splice 0.14 TCGA-67-3771-01 11 1862435 1862435 A T TNNI2 Nonsense_Mutation p.K151* 0.26 TCGA-67-3771-01 11 2191051 2191051 C A TH Missense_Mutation p.K78N 0.20 deleterious(0.02) benign(0.25) TCGA-67-3771-01 11 22248914 22248914 G T ANO5 Missense_Mutation p.A144S 0.28 deleterious(0) probably_damaging(0.997) TCGA-67-3771-01 11 31115602 31115602 T A DCDC1 Missense_Mutation p.T705S 0.15 tolerated(0.55) benign(0.031) TCGA-67-3771-01 11 315104 315104 G T IFITM1 Silent p.R123R 0.24 TCGA-67-3771-01 11 33565707 33565707 T A KIAA1549L Missense_Mutation p.D569E 0.16 tolerated_low_confidence(0.33) benign(0.008) TCGA-67-3771-01 11 36614834 36614834 G T RAG2 Missense_Mutation p.N295K 0.23 tolerated(0.48) possibly_damaging(0.764) TCGA-67-3771-01 11 4674254 4674254 C G OR51E1 Missense_Mutation p.I166M 0.20 deleterious(0) possibly_damaging(0.885) TCGA-67-3771-01 11 46895180 46895180 C A LRP4 Intron 0.14 TCGA-67-3771-01 11 47367838 47367838 G C MYBPC3 Missense_Mutation p.A337G 0.40 deleterious(0.02) benign(0.162) TCGA-67-3771-01 11 4936270 4936270 G A OR51G2 Silent p.I208I 0.22 TCGA-67-3771-01 11 5373536 5373536 C T OR51B6 Missense_Mutation p.P267S 0.23 tolerated(0.84) benign(0.315) TCGA-67-3771-01 11 5411245 5411246 TC A OR51M1 Frame_Shift_Del p.F206* 0.16 TCGA-67-3771-01 11 55418972 55418972 C A OR4S2 Missense_Mutation p.T198K 0.23 deleterious(0) probably_damaging(0.95) TCGA-67-3771-01 11 55681456 55681456 G A OR5W2 Silent p.T201T 0.27 TCGA-67-3771-01 11 56380893 56380893 C A OR5M1 Missense_Mutation p.G29V 0.22 tolerated(1) benign(0.005) TCGA-67-3771-01 11 56949837 56949837 G C LRRC55 Missense_Mutation p.R157P 0.23 deleterious(0) probably_damaging(0.961) TCGA-67-3771-01 11 57572182 57572182 G A CTNND1 Missense_Mutation p.C551Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 11 57995949 57995949 C T OR10Q1 Silent p.P133P 0.35 TCGA-67-3771-01 11 58275103 58275103 G T OR5B21 Missense_Mutation p.A159E 0.27 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-67-3771-01 11 58275540 58275540 C G OR5B21 Missense_Mutation p.L13F 0.27 deleterious_low_confidence(0) benign(0.34) TCGA-67-3771-01 11 58477469 58477469 G C GLYAT Missense_Mutation p.L221V 0.25 tolerated(0.32) possibly_damaging(0.856) TCGA-67-3771-01 11 58491902 58491902 G T GLYAT Missense_Mutation p.P23Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 11 6007293 6007293 C T OR52L1 Missense_Mutation p.V290I 0.28 tolerated(0.68) benign(0.02) TCGA-67-3771-01 11 6007353 6007353 A T OR52L1 Missense_Mutation p.Y270N 0.23 deleterious(0) probably_damaging(1) TCGA-67-3771-01 11 60636693 60636693 C T ZP1 Missense_Mutation p.P91L 0.34 tolerated(0.08) benign(0.004) TCGA-67-3771-01 11 60699590 60699590 G T TMEM132A Missense_Mutation p.Q450H 0.30 deleterious(0.04) probably_damaging(0.982) TCGA-67-3771-01 11 60889133 60889133 G A CD5 Missense_Mutation p.E286K 0.37 tolerated(0.06) possibly_damaging(0.483) TCGA-67-3771-01 11 61106638 61106638 G A DAK Silent p.Q98Q 0.40 TCGA-67-3771-01 11 6129473 6129473 G T OR56B4 Missense_Mutation p.M155I 0.25 tolerated(0.15) benign(0.001) TCGA-67-3771-01 11 62294197 62294197 C A AHNAK Silent p.G2564G 0.36 TCGA-67-3771-01 11 6238941 6238941 C A FAM160A2 Missense_Mutation p.E639D 0.13 tolerated(0.57) benign(0.002) TCGA-67-3771-01 11 62416029 62416029 A G INTS5 Missense_Mutation p.V508A 0.15 deleterious(0.01) possibly_damaging(0.894) TCGA-67-3771-01 11 62519745 62519745 G A ZBTB3 Silent p.D514D 0.36 TCGA-67-3771-01 11 62655685 62655685 G C SLC3A2 Missense_Mutation p.V510L 0.38 tolerated(0.1) benign(0.422) TCGA-67-3771-01 11 62751918 62751918 G T SLC22A6 Missense_Mutation p.T82N 0.19 tolerated(0.05) possibly_damaging(0.461) TCGA-67-3771-01 11 63235916 63235916 C A HRASLS5 Nonsense_Mutation p.G133* 0.34 TCGA-67-3771-01 11 63991664 63991664 C G TRPT1 Missense_Mutation p.R195P 0.15 tolerated(0.2) possibly_damaging(0.55) TCGA-67-3771-01 11 64120219 64120219 C T CCDC88B Silent p.H1120H 0.12 TCGA-67-3771-01 11 64374937 64374937 C A NRXN2 Missense_Mutation p.G1624C 0.31 deleterious_low_confidence(0) possibly_damaging(0.769) TCGA-67-3771-01 11 64518939 64518939 C A PYGM Splice_Site p.X610_splice 0.30 TCGA-67-3771-01 11 64815843 64815843 G A NAALADL1 Missense_Mutation p.R405C 0.25 deleterious(0) probably_damaging(0.954) TCGA-67-3771-01 11 65272908 65272908 A T MALAT1 RNA 0.13 TCGA-67-3771-01 11 65417286 65417286 G T SIPA1 Missense_Mutation p.R899M 0.37 deleterious(0) benign(0.423) TCGA-67-3771-01 11 65793536 65793536 G C CATSPER1 Silent p.V105V 0.28 TCGA-67-3771-01 11 6588332 6588332 A T DNHD1 Missense_Mutation p.S3865C 0.15 possibly_damaging(0.847) TCGA-67-3771-01 11 66102012 66102012 C T RIN1 Missense_Mutation p.E420K 0.40 tolerated(0.09) probably_damaging(0.993) TCGA-67-3771-01 11 66357977 66357977 T A CCDC87 Missense_Mutation p.H837L 0.33 tolerated(0.45) benign(0.001) TCGA-67-3771-01 11 67132763 67132763 G T CLCF1 Silent p.A174A 0.14 TCGA-67-3771-01 11 67800450 67800450 G T NDUFS8 Missense_Mutation p.R57L 0.43 deleterious_low_confidence(0.03) benign(0.001) TCGA-67-3771-01 11 68207328 68207328 G A LRP5 Missense_Mutation p.V1478I 0.21 tolerated(0.52) benign(0.067) TCGA-67-3771-01 11 6897968 6897968 C T OR10A4 Silent p.L30L 0.13 TCGA-67-3771-01 11 69456155 69456155 A C CCND1 Missense_Mutation p.D25A 0.20 deleterious(0) possibly_damaging(0.792) TCGA-67-3771-01 11 71850011 71850011 G C FOLR3 Missense_Mutation p.V101L 0.12 tolerated(0.69) benign(0.097) TCGA-67-3771-01 11 71940249 71940249 G T INPPL1 Missense_Mutation p.A212S 0.11 tolerated(0.66) benign(0.037) TCGA-67-3771-01 11 75902715 75902715 C A WNT11 Missense_Mutation p.K261N 0.20 deleterious(0.03) possibly_damaging(0.832) TCGA-67-3771-01 11 76372111 76372111 C A LRRC32 Nonsense_Mutation p.E176* 0.20 TCGA-67-3771-01 11 78412823 78412823 T C TENM4 Missense_Mutation p.Y1612C 0.21 deleterious(0) probably_damaging(0.91) TCGA-67-3771-01 11 82643578 82643578 G C C11orf82 Missense_Mutation p.E400Q 0.19 deleterious(0.04) possibly_damaging(0.697) TCGA-67-3771-01 11 83673925 83673925 G T DLG2 Intron 0.28 TCGA-67-3771-01 11 89184980 89184980 G A NOX4 Silent p.L79L 0.13 TCGA-67-3771-01 11 92532943 92532943 A G FAT3 Missense_Mutation p.K2255R 0.21 benign(0.023) TCGA-67-3771-01 11 92714702 92714702 G C MTNR1B Missense_Mutation p.G105R 0.27 deleterious(0.01) possibly_damaging(0.519) TCGA-67-3771-01 11 92715222 92715222 C A MTNR1B Missense_Mutation p.P278H 0.28 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 11 94330994 94330994 A G PIWIL4 Silent p.L431L 0.38 TCGA-67-3771-01 12 100934574 100934574 G A NR1H4 Silent p.L362L 0.27 TCGA-67-3771-01 12 100957082 100957082 C T NR1H4 Missense_Mutation p.L426F 0.46 deleterious(0) probably_damaging(0.925) TCGA-67-3771-01 12 101018004 101018004 T C GAS2L3 Missense_Mutation p.L474S 0.13 tolerated(0.16) benign(0.02) TCGA-67-3771-01 12 104340715 104340715 C G HSP90B1 Missense_Mutation p.A753G 0.17 tolerated(0.06) benign(0.079) TCGA-67-3771-01 12 105150924 105150924 C T CHST11 Silent p.L134L 0.09 TCGA-67-3771-01 12 105198867 105198867 G C SLC41A2 3'UTR 0.19 TCGA-67-3771-01 12 105515907 105515907 C G KIAA1033 Missense_Mutation p.S226C 0.35 deleterious(0.01) probably_damaging(0.989) TCGA-67-3771-01 12 106848433 106848433 A G POLR3B Missense_Mutation p.Y746C 0.29 deleterious(0) probably_damaging(0.998) TCGA-67-3771-01 12 108134944 108134944 T C PRDM4 Missense_Mutation p.H568R 0.16 tolerated(0.28) benign(0.057) TCGA-67-3771-01 12 109055932 109055932 T C CORO1C Silent p.V107V 0.34 TCGA-67-3771-01 12 114384250 114384250 T C RBM19 Missense_Mutation p.I480V 0.19 tolerated(0.25) benign(0.002) TCGA-67-3771-01 12 117660523 117660523 T A NOS1 Silent p.P1358P 0.40 TCGA-67-3771-01 12 121098917 121098917 G A CABP1 Missense_Mutation p.R328Q 0.25 tolerated(0.08) probably_damaging(0.951) TCGA-67-3771-01 12 122396299 122396299 C T WDR66 Nonsense_Mutation p.Q618* 0.15 TCGA-67-3771-01 12 122674674 122674674 C G LRRC43 Intron 0.18 TCGA-67-3771-01 12 123308005 123308005 G A CCDC62 Intron 0.40 TCGA-67-3771-01 12 125397990 125397990 C T UBC Missense_Mutation p.E110K 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-67-3771-01 12 125453184 125453184 C A DHX37 Missense_Mutation p.R435M 0.26 deleterious(0) probably_damaging(0.968) TCGA-67-3771-01 12 126137061 126137061 G T TMEM132B Silent p.A658A 0.35 TCGA-67-3771-01 12 132546780 132546780 C T EP400 Silent p.V2670V 0.12 TCGA-67-3771-01 12 133291505 133291505 C G PGAM5 Missense_Mutation p.L85V 0.09 tolerated(0.39) benign(0.004) TCGA-67-3771-01 12 13717013 13717013 G T GRIN2B Missense_Mutation p.D1053E 0.41 tolerated(0.69) possibly_damaging(0.474) TCGA-67-3771-01 12 13717313 13717313 G T GRIN2B Silent p.P953P 0.24 TCGA-67-3771-01 12 20522956 20522956 G - PDE3A Frame_Shift_Del p.L247Wfs*29 0.12 TCGA-67-3771-01 12 21981911 21981911 C G ABCC9 Missense_Mutation p.R1217T 0.23 deleterious(0.01) possibly_damaging(0.826) TCGA-67-3771-01 12 22068796 22068796 G T ABCC9 Missense_Mutation p.L208I 0.33 deleterious(0.01) possibly_damaging(0.835) TCGA-67-3771-01 12 26553192 26553192 C G ITPR2 Splice_Site p.X2467_splice 0.23 TCGA-67-3771-01 12 29786167 29786167 C A TMTC1 Missense_Mutation p.E347D 0.21 deleterious(0.02) benign(0.41) TCGA-67-3771-01 12 33592636 33592636 G T SYT10 5'UTR 0.38 TCGA-67-3771-01 12 41410526 41410526 A G CNTN1 Missense_Mutation p.I743V 0.26 tolerated(0.45) benign(0.032) TCGA-67-3771-01 12 45004705 45004705 A T NELL2 Nonsense_Mutation p.L548* 0.39 TCGA-67-3771-01 12 45410214 45410214 C G DBX2 Missense_Mutation p.R292T 0.19 deleterious_low_confidence(0) possibly_damaging(0.588) TCGA-67-3771-01 12 46321290 46321290 C G SCAF11 Missense_Mutation p.E732Q 0.07 tolerated(0.42) benign(0.063) TCGA-67-3771-01 12 4747357 4747357 T C AKAP3 Silent p.S2S 0.25 TCGA-67-3771-01 12 48543473 48543473 G T ASB8 Missense_Mutation p.N181K 0.23 deleterious(0.01) probably_damaging(0.982) TCGA-67-3771-01 12 49373271 49373271 C T WNT1 Missense_Mutation p.S42F 0.28 tolerated(0.1) possibly_damaging(0.459) TCGA-67-3771-01 12 49435132 49435132 C A KMT2D Missense_Mutation p.G2141W 0.37 probably_damaging(0.998) TCGA-67-3771-01 12 49521710 49521710 G C TUBA1B 3'UTR 0.13 TCGA-67-3771-01 12 52448768 52448768 G T NR4A1 Missense_Mutation p.G232V 0.35 tolerated(0.32) benign(0.002) TCGA-67-3771-01 12 52467573 52467573 A G C12orf44 Missense_Mutation p.I47V 0.33 tolerated(0.69) benign(0.059) TCGA-67-3771-01 12 52788852 52788852 G T KRT82 Silent p.P483P 0.25 TCGA-67-3771-01 12 52788853 52788853 G T KRT82 Missense_Mutation p.P483H 0.26 deleterious(0) possibly_damaging(0.831) TCGA-67-3771-01 12 53010126 53010126 G A KRT73 Silent p.T162T 0.18 TCGA-67-3771-01 12 53042001 53042001 C A KRT2 Missense_Mutation p.A360S 0.32 deleterious(0) probably_damaging(0.968) TCGA-67-3771-01 12 53045355 53045355 G A KRT2 Missense_Mutation p.S191F 0.22 deleterious(0) probably_damaging(0.987) TCGA-67-3771-01 12 53291304 53291304 G C KRT8 Missense_Mutation p.R482G 0.10 tolerated(0.32) benign(0.007) TCGA-67-3771-01 12 53400128 53400128 A C EIF4B 5'UTR 0.50 TCGA-67-3771-01 12 53451395 53451395 T C TENC1 Missense_Mutation p.M307T 0.53 deleterious(0) probably_damaging(0.98) TCGA-67-3771-01 12 54338891 54338891 A G HOXC13 Missense_Mutation p.S282G 0.20 deleterious(0.01) probably_damaging(0.987) TCGA-67-3771-01 12 54675174 54675174 C G HNRNPA1 Missense_Mutation p.P7R 0.32 deleterious(0) probably_damaging(0.969) TCGA-67-3771-01 12 54912725 54912725 C T NCKAP1L Missense_Mutation p.S483L 0.17 deleterious(0.02) benign(0.216) TCGA-67-3771-01 12 55523797 55523797 C A OR9K2 Missense_Mutation p.T82K 0.27 deleterious(0) probably_damaging(0.972) TCGA-67-3771-01 12 55846499 55846499 G C OR6C2 Missense_Mutation p.D168H 0.34 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-67-3771-01 12 55945160 55945160 C - OR6C4 Frame_Shift_Del p.H52Tfs*16 0.12 TCGA-67-3771-01 12 56397693 56397693 G A SUOX Missense_Mutation p.D174N 0.12 tolerated(0.07) benign(0.066) TCGA-67-3771-01 12 56619478 56619478 G C NABP2 Missense_Mutation p.E97Q 0.15 deleterious(0) probably_damaging(0.998) TCGA-67-3771-01 12 56647906 56647906 T A ANKRD52 Missense_Mutation p.N284I 0.15 deleterious(0) possibly_damaging(0.772) TCGA-67-3771-01 12 57346020 57346020 T A RDH16 Silent p.S249S 0.34 TCGA-67-3771-01 12 63543950 63543950 C T AVPR1A Missense_Mutation p.G223S 0.15 tolerated(0.8) benign(0.007) TCGA-67-3771-01 12 64536211 64536211 C T SRGAP1 Missense_Mutation p.T1006M 0.30 deleterious_low_confidence(0.04) benign(0.004) TCGA-67-3771-01 12 6692639 6692639 C T CHD4 Intron 0.13 TCGA-67-3771-01 12 71094993 71094993 G A PTPRR Missense_Mutation p.S373L 0.16 deleterious(0) possibly_damaging(0.585) TCGA-67-3771-01 12 71977541 71977541 G A LGR5 Missense_Mutation p.R584K 0.18 tolerated(0.19) benign(0.393) TCGA-67-3771-01 12 72680629 72680629 G T TRHDE Missense_Mutation p.W316C 0.33 deleterious(0) probably_damaging(0.997) TCGA-67-3771-01 12 7342955 7342955 C T PEX5 Intron 0.24 TCGA-67-3771-01 12 78400307 78400307 A T NAV3 Missense_Mutation p.K330M 0.32 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 12 78400665 78400665 A - NAV3 Frame_Shift_Del p.A451Lfs*41 0.29 TCGA-67-3771-01 12 78574751 78574751 C A NAV3 Missense_Mutation p.T1851N 0.24 tolerated(0.07) benign(0.407) TCGA-67-3771-01 12 85285753 85285753 T C SLC6A15 Silent p.T49T 0.09 TCGA-67-3771-01 12 85285754 85285754 G T SLC6A15 Missense_Mutation p.T49K 0.09 tolerated(1) benign(0) TCGA-67-3771-01 12 88588674 88588674 C T TMTC3 Missense_Mutation p.P665S 0.12 tolerated(0.2) benign(0.099) TCGA-67-3771-01 12 89916936 89916936 T A GALNT4 Missense_Mutation p.D464V 0.16 deleterious(0.02) possibly_damaging(0.568) TCGA-67-3771-01 12 93163941 93163941 C T PLEKHG7 Silent p.F370F 0.18 TCGA-67-3771-01 12 994187 994187 C T WNK1 Missense_Mutation p.S1406L 0.26 tolerated_low_confidence(0.05) benign(0.392) TCGA-67-3771-01 13 109859232 109859232 G T MYO16 3'UTR 0.18 TCGA-67-3771-01 13 110817207 110817207 A T COL4A1 Splice_Site p.X1384_splice 0.08 TCGA-67-3771-01 13 111767915 111767915 G - ARHGEF7 Frame_Shift_Del p.V16Cfs*20 0.24 TCGA-67-3771-01 13 112722007 112722007 C T SOX1 Missense_Mutation p.S12L 0.14 deleterious(0.03) benign(0.354) TCGA-67-3771-01 13 113719264 113719264 C T MCF2L Silent p.F207F 0.36 TCGA-67-3771-01 13 114773076 114773076 C G RASA3 Missense_Mutation p.D559H 0.14 deleterious(0.01) possibly_damaging(0.728) TCGA-67-3771-01 13 23913317 23913317 G A SACS Silent p.I1566I 0.09 TCGA-67-3771-01 13 25671037 25671037 G T PABPC3 Missense_Mutation p.G234V 0.16 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 13 26155990 26155990 G T ATP8A2 Missense_Mutation p.D681Y 0.37 deleterious(0) probably_damaging(0.985) TCGA-67-3771-01 13 28578214 28578214 G T FLT3 Missense_Mutation p.P986Q 0.38 deleterious_low_confidence(0.01) benign(0.376) TCGA-67-3771-01 13 28880878 28880878 G T FLT1 Missense_Mutation p.A1251D 0.15 deleterious(0.01) possibly_damaging(0.556) TCGA-67-3771-01 13 29001982 29001982 C G FLT1 Missense_Mutation p.V395L 0.28 deleterious(0) probably_damaging(1) TCGA-67-3771-01 13 29600034 29600034 C T MTUS2 Missense_Mutation p.S410F 0.25 deleterious(0.01) benign(0.034) TCGA-67-3771-01 13 35624523 35624523 A T NBEA Missense_Mutation p.Q321H 0.38 tolerated(0.05) probably_damaging(0.961) TCGA-67-3771-01 13 36241513 36241513 G T NBEA Missense_Mutation p.G2802C 0.12 deleterious(0) probably_damaging(0.998) TCGA-67-3771-01 13 36699915 36699915 C G DCLK1 Silent p.L120L 0.27 TCGA-67-3771-01 13 38266182 38266182 A T TRPC4 Silent p.G396G 0.43 TCGA-67-3771-01 13 38266380 38266380 C A TRPC4 Missense_Mutation p.M330I 0.12 tolerated(0.43) benign(0.061) TCGA-67-3771-01 13 41706012 41706012 C A KBTBD6 Missense_Mutation p.E212D 0.14 tolerated(0.12) benign(0.261) TCGA-67-3771-01 13 43930179 43930179 C A ENOX1 Missense_Mutation p.R233S 0.11 deleterious(0) possibly_damaging(0.498) TCGA-67-3771-01 13 52439604 52439604 G C CCDC70 Silent p.A30A 0.18 TCGA-67-3771-01 13 52511514 52511514 C A ATP7B Missense_Mutation p.V1307L 0.43 deleterious(0) probably_damaging(0.997) TCGA-67-3771-01 13 70535449 70535449 C A KLHL1 Missense_Mutation p.A270S 0.25 tolerated(0.1) possibly_damaging(0.474) TCGA-67-3771-01 13 70681521 70681521 T G KLHL1 Missense_Mutation p.Q104P 0.58 tolerated_low_confidence(0.32) benign(0.087) TCGA-67-3771-01 13 73334716 73334716 G A DIS3 Missense_Mutation p.S915L 0.12 tolerated(0.15) benign(0.197) TCGA-67-3771-01 13 77566091 77566091 G C CLN5 Missense_Mutation p.R2P 0.40 unknown(0) TCGA-67-3771-01 13 77765894 77765894 C A MYCBP2 Missense_Mutation p.W1292C 0.39 probably_damaging(1) TCGA-67-3771-01 13 95862948 95862948 G A ABCC4 Nonsense_Mutation p.Q207* 0.11 TCGA-67-3771-01 14 103592753 103592753 C T TNFAIP2 5'UTR 0.25 TCGA-67-3771-01 14 105408231 105408231 G A AHNAK2 Silent p.D4519D 0.18 TCGA-67-3771-01 14 105416868 105416868 C G AHNAK2 Silent p.L1640L 0.20 TCGA-67-3771-01 14 105419147 105419147 G T AHNAK2 Missense_Mutation p.L881I 0.21 benign(0.056) TCGA-67-3771-01 14 106321585 106321585 C T IGHM Missense_Mutation p.D217N 0.23 tolerated(0.54) benign(0.001) TCGA-67-3771-01 14 107035128 107035128 G A IGHV5-51 Missense_Mutation p.A12V 0.33 tolerated(0.08) probably_damaging(0.986) TCGA-67-3771-01 14 20249037 20249037 C T OR4M1 Missense_Mutation p.R186W 0.19 deleterious(0) possibly_damaging(0.846) TCGA-67-3771-01 14 21860668 21860668 C G CHD8 Missense_Mutation p.D2257H 0.16 deleterious(0) possibly_damaging(0.861) TCGA-67-3771-01 14 22133522 22133522 G T OR4E2 Missense_Mutation p.V76F 0.16 tolerated(0.42) probably_damaging(0.999) TCGA-67-3771-01 14 22573837 22573837 C G TRAV24 Missense_Mutation p.C19W 0.46 tolerated(0.34) benign(0.001) TCGA-67-3771-01 14 23846328 23846328 G C CMTM5 5'UTR 0.46 TCGA-67-3771-01 14 23945466 23945466 G C NGDN Missense_Mutation p.R188P 0.15 deleterious(0) possibly_damaging(0.747) TCGA-67-3771-01 14 24546933 24546933 C - CPNE6 Frame_Shift_Del p.P557Rfs*80 0.14 TCGA-67-3771-01 14 24631533 24631533 G T IRF9 Missense_Mutation p.K60N 0.21 deleterious(0) probably_damaging(1) TCGA-67-3771-01 14 24901483 24901483 G T KHNYN Missense_Mutation p.R339L 0.42 tolerated(0.19) probably_damaging(0.997) TCGA-67-3771-01 14 26917884 26917884 C G NOVA1 Missense_Mutation p.G269R 0.18 deleterious(0) unknown(0) TCGA-67-3771-01 14 34269356 34269356 C G NPAS3 Missense_Mutation p.R615G 0.33 tolerated_low_confidence(0.19) probably_damaging(0.931) TCGA-67-3771-01 14 38724115 38724115 G T CLEC14A Silent p.T371T 0.16 TCGA-67-3771-01 14 42355849 42355849 T A LRFN5 Nonsense_Mutation p.Y7* 0.25 TCGA-67-3771-01 14 45415050 45415050 G C KLHL28 Missense_Mutation p.L28V 0.09 deleterious(0) possibly_damaging(0.838) TCGA-67-3771-01 14 45644332 45644332 C G FANCM Nonsense_Mutation p.S792* 0.16 TCGA-67-3771-01 14 51226916 51226916 G C NIN Silent p.L686L 0.04 TCGA-67-3771-01 14 52781297 52781297 G A PTGER2 Missense_Mutation p.E11K 0.08 tolerated(0.31) benign(0.005) TCGA-67-3771-01 14 59112366 59112366 T A DACT1 Missense_Mutation p.I342N 0.53 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 14 61201638 61201638 A T MNAT1 Nonsense_Mutation p.K20* 0.12 TCGA-67-3771-01 14 64606758 64606759 GG T SYNE2 Frame_Shift_Del p.L4981Ffs*24 0.33 TCGA-67-3771-01 14 70170156 70170156 C T KIAA0247 Missense_Mutation p.H56Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 14 71227747 71227747 T A MAP3K9 Missense_Mutation p.M325L 0.53 tolerated(1) benign(0.001) TCGA-67-3771-01 14 73190390 73190390 T C DPF3 Missense_Mutation p.E159G 0.49 deleterious(0.01) benign(0.116) TCGA-67-3771-01 14 75265292 75265292 C T YLPM1 Nonsense_Mutation p.Q1098* 0.55 TCGA-67-3771-01 14 75563845 75563845 G A NEK9 Missense_Mutation p.P711S 0.12 tolerated(0.4) benign(0.028) TCGA-67-3771-01 14 76123847 76123847 A C C14orf1 5'UTR 0.13 TCGA-67-3771-01 14 76211508 76211508 C T TTLL5 Missense_Mutation p.P451L 0.39 tolerated(0.06) benign(0.007) TCGA-67-3771-01 14 76243112 76243112 A G TTLL5 Missense_Mutation p.K769R 0.60 tolerated(0.07) probably_damaging(0.916) TCGA-67-3771-01 14 76966335 76966335 C A ESRRB Missense_Mutation p.R476S 0.69 tolerated_low_confidence(0.07) benign(0.001) TCGA-67-3771-01 14 81610458 81610458 C A TSHR Missense_Mutation p.Q686K 0.08 deleterious(0.03) benign(0.26) TCGA-67-3771-01 14 92609541 92609541 A T CPSF2 Missense_Mutation p.D348V 0.20 deleterious(0) possibly_damaging(0.812) TCGA-67-3771-01 14 94083525 94083525 C A UNC79 Missense_Mutation p.L1190I 0.19 tolerated(0.08) probably_damaging(0.995) TCGA-67-3771-01 14 94083609 94083609 C T UNC79 Missense_Mutation p.R1218W 0.21 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 14 94770686 94770686 C G SERPINA6 3'UTR 0.24 TCGA-67-3771-01 14 94936017 94936017 C A SERPINA9 Missense_Mutation p.R72L 0.27 tolerated(0.09) benign(0.005) TCGA-67-3771-01 14 96135898 96135898 A T TCL6 RNA 0.13 TCGA-67-3771-01 14 96135899 96135899 G T TCL6 RNA 0.13 TCGA-67-3771-01 14 96809570 96809570 C A ATG2B Silent p.V210V 0.18 TCGA-67-3771-01 14 99642483 99642483 G A BCL11B Silent p.F230F 0.19 TCGA-67-3771-01 15 100802561 100802561 C G ADAMTS17 Missense_Mutation p.R290P 0.14 tolerated(0.15) probably_damaging(0.998) TCGA-67-3771-01 15 22369243 22369243 C A OR4M2 Missense_Mutation p.A223D 0.17 deleterious(0) benign(0.309) TCGA-67-3771-01 15 25473971 25473971 G T SNORD115-33 5'Flank 0.20 TCGA-67-3771-01 15 25475993 25475993 G T SNORD115-33 RNA 0.18 TCGA-67-3771-01 15 34021153 34021153 G T RYR3 Missense_Mutation p.D2377Y 0.38 possibly_damaging(0.726) TCGA-67-3771-01 15 45397883 45397883 C G DUOX2 Silent p.R764R 0.41 TCGA-67-3771-01 15 48712914 48712914 G A FBN1 Missense_Mutation p.L2597F 0.09 probably_damaging(0.954) TCGA-67-3771-01 15 48805800 48805800 T G FBN1 Missense_Mutation p.T512P 0.18 benign(0.331) TCGA-67-3771-01 15 49059596 49059596 C T CEP152 Missense_Mutation p.A695T 0.32 tolerated(0.14) probably_damaging(0.999) TCGA-67-3771-01 15 49059597 49059597 T A CEP152 Missense_Mutation p.L694F 0.32 deleterious(0.01) probably_damaging(0.982) TCGA-67-3771-01 15 49611952 49611952 C T GALK2 Silent p.D373D 0.30 TCGA-67-3771-01 15 50534774 50534774 G T HDC Missense_Mutation p.P558T 0.31 deleterious_low_confidence(0.01) benign(0.06) TCGA-67-3771-01 15 50534775 50534775 G T HDC Silent p.A557A 0.31 TCGA-67-3771-01 15 50540459 50540459 G C HDC Missense_Mutation p.Q375E 0.29 deleterious(0.01) probably_damaging(0.967) TCGA-67-3771-01 15 50555455 50555455 T A HDC Missense_Mutation p.I61F 0.25 tolerated(0.13) benign(0.398) TCGA-67-3771-01 15 52017224 52017224 A G LYSMD2 Missense_Mutation p.L123S 0.28 tolerated(0.49) benign(0.004) TCGA-67-3771-01 15 56681599 56681599 G A TEX9 Splice_Site p.X132_splice 0.38 TCGA-67-3771-01 15 58957351 58957351 G C ADAM10 Nonsense_Mutation p.S177* 0.14 TCGA-67-3771-01 15 64499783 64499783 C - CSNK1G1 Frame_Shift_Del p.R231Efs*7 0.20 TCGA-67-3771-01 15 65676637 65676637 G T IGDCC4 Missense_Mutation p.P1155T 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.543) TCGA-67-3771-01 15 70342515 70342515 C T TLE3 Missense_Mutation p.C747Y 0.30 deleterious(0) probably_damaging(1) TCGA-67-3771-01 15 73991925 73991925 A G CD276 Splice_Site 0.20 TCGA-67-3771-01 15 74003564 74003564 G C CD276 Intron 0.32 TCGA-67-3771-01 15 75014861 75014861 G A CYP1A1 Missense_Mutation p.S193L 0.33 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 15 75014929 75014929 C G CYP1A1 Silent p.L170L 0.22 TCGA-67-3771-01 15 82336941 82336941 T A MEX3B Missense_Mutation p.K90N 0.27 deleterious(0) probably_damaging(0.962) TCGA-67-3771-01 15 83332601 83332601 C A AP3B2 Silent p.S777S 0.38 TCGA-67-3771-01 15 88522572 88522572 G T NTRK3 Intron 0.36 TCGA-67-3771-01 15 89198743 89198743 G A ISG20 Missense_Mutation p.R176H 0.21 tolerated_low_confidence(0.32) benign(0) TCGA-67-3771-01 15 89449995 89449995 C A MFGE8 Silent p.R134R 0.32 TCGA-67-3771-01 15 89911264 89911264 C G MIR9-3 RNA 0.19 TCGA-67-3771-01 15 90020012 90020012 A T RHCG Missense_Mutation p.C429S 0.28 deleterious(0.01) probably_damaging(1) TCGA-67-3771-01 15 90346962 90346962 G A ANPEP Silent p.S451S 0.24 TCGA-67-3771-01 16 11133706 11133706 A G CLEC16A Missense_Mutation p.R545G 0.33 deleterious(0.04) benign(0.037) TCGA-67-3771-01 16 1306299 1306299 C A TPSD1 Silent p.P6P 0.23 TCGA-67-3771-01 16 14766512 14766512 G C PLA2G10 Silent p.L150L 0.17 TCGA-67-3771-01 16 14989989 14989989 G T NOMO1 3'UTR 0.07 TCGA-67-3771-01 16 15225432 15225432 C A RP11-1186N24.5 RNA 0.15 TCGA-67-3771-01 16 16235220 16235220 A T ABCC1 3'UTR 0.29 TCGA-67-3771-01 16 1652541 1652541 G A IFT140 Silent p.L67L 0.09 TCGA-67-3771-01 16 18856973 18856973 T C SMG1 Silent p.K1999K 0.15 TCGA-67-3771-01 16 20486733 20486733 A C ACSM2A Missense_Mutation p.Y315S 0.14 deleterious(0) possibly_damaging(0.859) TCGA-67-3771-01 16 2164413 2164413 C A PKD1 Nonsense_Mutation p.E871* 0.24 TCGA-67-3771-01 16 21698923 21698923 A T OTOA Missense_Mutation p.T197S 0.18 tolerated(0.06) benign(0.149) TCGA-67-3771-01 16 23848711 23848711 G T PRKCB Missense_Mutation p.Q63H 0.17 deleterious(0.02) probably_damaging(0.959) TCGA-67-3771-01 16 27375021 27375021 C T IL4R Missense_Mutation p.S783L 0.15 tolerated(1) benign(0) TCGA-67-3771-01 16 29819948 29819948 G A MAZ Missense_Mutation p.E389K 0.10 deleterious(0.01) benign(0.147) TCGA-67-3771-01 16 30732215 30732215 G T SRCAP Missense_Mutation p.G1057W 0.17 unknown(0) TCGA-67-3771-01 16 30732216 30732216 G T SRCAP Missense_Mutation p.G1057V 0.17 unknown(0) TCGA-67-3771-01 16 31422674 31422674 C A ITGAD Missense_Mutation p.H515N 0.25 deleterious(0.02) benign(0.062) TCGA-67-3771-01 16 3294475 3294475 G C MEFV Nonsense_Mutation p.S575* 0.18 TCGA-67-3771-01 16 3367374 3367374 G C ZNF75A Missense_Mutation p.K132N 0.15 tolerated(0.11) benign(0.012) TCGA-67-3771-01 16 347741 347741 T C AXIN1 Missense_Mutation p.S589G 0.24 tolerated(0.4) benign(0) TCGA-67-3771-01 16 57490421 57490421 G C COQ9 Silent p.L128L 0.43 TCGA-67-3771-01 16 57761225 57761225 G A CCDC135 Silent p.L700L 0.18 TCGA-67-3771-01 16 58030897 58030897 C - ZNF319 Frame_Shift_Del p.E425Sfs*128 0.32 TCGA-67-3771-01 16 67034819 67034819 C G CES4A Silent p.G154G 0.39 TCGA-67-3771-01 16 67203722 67203722 C T HSF4 3'UTR 0.17 TCGA-67-3771-01 16 67218614 67218614 G C EXOC3L1 Missense_Mutation p.L669V 0.20 deleterious(0.02) possibly_damaging(0.88) TCGA-67-3771-01 16 68289811 68289811 G A PLA2G15 Nonsense_Mutation p.W215* 0.31 TCGA-67-3771-01 16 68309111 68309111 C A SLC7A6 Missense_Mutation p.P161H 0.15 deleterious(0.01) probably_damaging(0.976) TCGA-67-3771-01 16 68941453 68941453 G T TANGO6 Missense_Mutation p.G592V 0.34 deleterious(0) probably_damaging(0.947) TCGA-67-3771-01 16 706405 706405 G T WDR90 Silent p.R690R 0.19 TCGA-67-3771-01 16 74443757 74443757 C A CLEC18B Missense_Mutation p.A411S 0.08 tolerated_low_confidence(0.35) benign(0.016) TCGA-67-3771-01 16 773113 773113 G T CCDC78 Missense_Mutation p.D394E 0.17 tolerated(0.43) benign(0.062) TCGA-67-3771-01 16 7760773 7760773 A T RBFOX1 3'UTR 0.22 TCGA-67-3771-01 16 84050323 84050323 C T SLC38A8 Missense_Mutation p.M321I 0.32 tolerated(1) benign(0.004) TCGA-67-3771-01 17 10361031 10361031 A G MYH4 Missense_Mutation p.S535P 0.15 deleterious(0.01) probably_damaging(1) TCGA-67-3771-01 17 10367852 10367852 G T MYH4 Nonsense_Mutation p.Y195* 0.37 TCGA-67-3771-01 17 12028689 12028689 G C MAP2K4 Splice_Site p.X297_splice 0.39 TCGA-67-3771-01 17 16699475 16699475 A G CCDC144A 3'UTR 0.26 TCGA-67-3771-01 17 17699745 17699745 G A RAI1 Silent p.R1161R 0.22 TCGA-67-3771-01 17 18284947 18284947 G A EVPLL Silent p.Q83Q 0.35 TCGA-67-3771-01 17 19282274 19282274 G T MAPK7 Missense_Mutation p.V21L 0.33 tolerated_low_confidence(0.14) unknown(0) TCGA-67-3771-01 17 21319507 21319507 C A KCNJ12 Silent p.R285R 0.09 TCGA-67-3771-01 17 26094815 26094815 G T NOS2 Missense_Mutation p.P695T 0.21 tolerated(0.26) probably_damaging(0.938) TCGA-67-3771-01 17 26919437 26919437 C T SPAG5 Missense_Mutation p.M275I 0.31 tolerated(1) benign(0) TCGA-67-3771-01 17 26939458 26939458 C G RP11-192H23.4 Intron 0.22 TCGA-67-3771-01 17 31324729 31324729 G T SPACA3 Splice_Site p.X194_splice 0.36 TCGA-67-3771-01 17 34851960 34851960 G A MYO19 3'UTR 0.22 TCGA-67-3771-01 17 36453205 36453205 G T MRPL45 Missense_Mutation p.W19L 0.20 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-67-3771-01 17 3651249 3651249 C G ITGAE Missense_Mutation p.E708Q 0.21 tolerated(0.09) benign(0.393) TCGA-67-3771-01 17 3786361 3786361 T A CAMKK1 Missense_Mutation p.H208L 0.43 deleterious(0) probably_damaging(1) TCGA-67-3771-01 17 39092742 39092742 C A KRT23 Silent p.A38A 0.35 TCGA-67-3771-01 17 39681167 39681167 G C KRT19 Silent p.A196A 0.13 TCGA-67-3771-01 17 40095333 40095333 G T TTC25 RNA 0.23 TCGA-67-3771-01 17 40280324 40280324 C A RAB5C Silent p.A165A 0.20 TCGA-67-3771-01 17 40344578 40344578 C T GHDC Silent p.L190L 0.23 TCGA-67-3771-01 17 4186205 4186205 C T UBE2G1 Silent p.R146R 0.33 TCGA-67-3771-01 17 42335826 42335826 G C SLC4A1 Missense_Mutation p.Q348E 0.16 tolerated(1) benign(0.012) TCGA-67-3771-01 17 42336924 42336924 G A SLC4A1 Missense_Mutation p.S212L 0.15 tolerated(0.36) benign(0.001) TCGA-67-3771-01 17 42478467 42478467 C T GPATCH8 Silent p.G326G 0.21 TCGA-67-3771-01 17 43012664 43012664 T C KIF18B Missense_Mutation p.Q145R 0.08 deleterious(0.01) benign(0.075) TCGA-67-3771-01 17 43213514 43213514 G T ACBD4 Translation_Start_Site p.M1? 0.12 deleterious_low_confidence(0) possibly_damaging(0.884) TCGA-67-3771-01 17 43910522 43910522 G T CRHR1 Missense_Mutation p.R292S 0.08 tolerated(0.19) benign(0.007) TCGA-67-3771-01 17 44077047 44077047 G C STH 3'UTR 0.36 TCGA-67-3771-01 17 4442216 4442216 C T SPNS2 3'UTR 0.19 TCGA-67-3771-01 17 45447856 45447856 G C EFCAB13 Missense_Mutation p.E287Q 0.12 tolerated(1) benign(0.004) TCGA-67-3771-01 17 45759827 45759827 G C KPNB1 3'UTR 0.11 TCGA-67-3771-01 17 45822468 45822468 C A TBX21 Missense_Mutation p.F448L 0.33 tolerated(0.29) probably_damaging(0.952) TCGA-67-3771-01 17 48655845 48655845 G T CACNA1G Missense_Mutation p.D741Y 0.12 deleterious(0) probably_damaging(0.998) TCGA-67-3771-01 17 48761448 48761448 C G ABCC3 Missense_Mutation p.Q1365E 0.25 deleterious(0) benign(0.314) TCGA-67-3771-01 17 5012590 5012590 G A ZNF232 Intron 0.45 TCGA-67-3771-01 17 5463332 5463332 C T NLRP1 Silent p.E228E 0.16 TCGA-67-3771-01 17 56058018 56058018 G C VEZF1 Missense_Mutation p.H308D 0.14 deleterious(0) benign(0.444) TCGA-67-3771-01 17 57126552 57126552 T C TRIM37 Missense_Mutation p.N506S 0.19 tolerated_low_confidence(0.18) benign(0.001) TCGA-67-3771-01 17 57430790 57430790 C G YPEL2 Missense_Mutation p.S7W 0.14 deleterious(0.01) possibly_damaging(0.856) TCGA-67-3771-01 17 57958297 57958297 T G TUBD1 Silent p.S165S 0.35 TCGA-67-3771-01 17 58786579 58786579 G A BCAS3 Splice_Site p.X72_splice 0.25 TCGA-67-3771-01 17 61514944 61514944 G C CYB561 Intron 0.12 TCGA-67-3771-01 17 61897138 61897138 C G FTSJ3 3'UTR 0.29 TCGA-67-3771-01 17 62558992 62558992 C T SMURF2 Missense_Mutation p.R370Q 0.16 deleterious(0.01) possibly_damaging(0.55) TCGA-67-3771-01 17 62796435 62796435 C G PLEKHM1P RNA 0.20 TCGA-67-3771-01 17 62796436 62796436 C A PLEKHM1P RNA 0.20 TCGA-67-3771-01 17 63189700 63189700 C T RGS9 Silent p.A262A 0.11 TCGA-67-3771-01 17 6606404 6606404 G T SLC13A5 Silent p.R201R 0.40 TCGA-67-3771-01 17 67012515 67012515 A T ABCA9 Missense_Mutation p.I973K 0.11 deleterious(0.02) benign(0.082) TCGA-67-3771-01 17 71427710 71427710 C A SDK2 Missense_Mutation p.G471W 0.23 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 17 71427711 71427711 C T SDK2 Silent p.A470A 0.22 TCGA-67-3771-01 17 72233616 72233616 A T TTYH2 Nonsense_Mutation p.K200* 0.16 TCGA-67-3771-01 17 72322384 72322384 G C KIF19 5'UTR 0.19 TCGA-67-3771-01 17 72469792 72469792 C T CD300A Missense_Mutation p.P53L 0.16 deleterious(0.01) benign(0.072) TCGA-67-3771-01 17 72838542 72838542 C G GRIN2C 3'UTR 0.14 TCGA-67-3771-01 17 72875562 72875562 G A FADS6 Missense_Mutation p.P293L 0.15 deleterious(0) probably_damaging(1) TCGA-67-3771-01 17 73567113 73567113 G T LLGL2 Missense_Mutation p.R703L 0.40 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 17 74094015 74094015 C A EXOC7 Missense_Mutation p.V168L 0.19 tolerated(0.34) benign(0.002) TCGA-67-3771-01 17 74740468 74740468 C T MFSD11 Silent p.F187F 0.13 TCGA-67-3771-01 17 7578550 7578550 G C TP53 Missense_Mutation p.S127C 0.56 deleterious(0) probably_damaging(1) TCGA-67-3771-01 17 76455187 76455187 C G DNAH17 Missense_Mutation p.E3239Q 0.06 benign(0.148) TCGA-67-3771-01 17 78265440 78265440 G C RNF213 Missense_Mutation p.D429H 0.20 benign(0) TCGA-67-3771-01 17 79234101 79234101 C T SLC38A10 Missense_Mutation p.A409T 0.50 tolerated(0.12) benign(0.284) TCGA-67-3771-01 17 79250893 79250893 C T SLC38A10 Missense_Mutation p.V223M 0.18 deleterious(0.04) probably_damaging(0.982) TCGA-67-3771-01 17 80010094 80010094 C T GPS1 5'UTR 0.45 TCGA-67-3771-01 17 81042801 81042801 C A METRNL Intron 0.16 TCGA-67-3771-01 17 8706477 8706477 T C PIK3R6 3'UTR 0.25 TCGA-67-3771-01 18 13387578 13387578 G T LDLRAD4 5'UTR 0.19 TCGA-67-3771-01 18 18550453 18550453 C A ROCK1 Missense_Mutation p.L892F 0.35 deleterious(0) possibly_damaging(0.659) TCGA-67-3771-01 18 19359454 19359454 G A MIB1 Missense_Mutation p.G239D 0.15 tolerated(0.49) benign(0.039) TCGA-67-3771-01 18 21214028 21214028 T C ANKRD29 Missense_Mutation p.H139R 0.22 deleterious(0) possibly_damaging(0.815) TCGA-67-3771-01 18 21747290 21747290 C G OSBPL1A Intron 0.09 TCGA-67-3771-01 18 22040786 22040786 G T HRH4 Nonsense_Mutation p.G32* 0.35 TCGA-67-3771-01 18 22807148 22807148 G T ZNF521 Missense_Mutation p.T245N 0.37 tolerated(0.24) benign(0.328) TCGA-67-3771-01 18 24035815 24035815 C T KCTD1 Silent p.G222G 0.09 TCGA-67-3771-01 18 25589787 25589787 C A CDH2 Missense_Mutation p.G199V 0.21 deleterious(0) probably_damaging(1) TCGA-67-3771-01 18 28993526 28993526 C A DSG4 Silent p.R1050R 0.45 TCGA-67-3771-01 18 30260213 30260213 C G KLHL14 Missense_Mutation p.D503H 0.14 deleterious(0.04) probably_damaging(0.998) TCGA-67-3771-01 18 32438301 32438301 C T DTNA Nonsense_Mutation p.Q442* 0.18 TCGA-67-3771-01 18 33734940 33734940 G T ELP2 Missense_Mutation p.W483L 0.37 deleterious(0.03) possibly_damaging(0.609) TCGA-67-3771-01 18 40851705 40851705 C A SYT4 Silent p.L314L 0.17 TCGA-67-3771-01 18 42530068 42530068 G C SETBP1 Missense_Mutation p.E255Q 0.23 deleterious(0.01) possibly_damaging(0.773) TCGA-67-3771-01 18 43223121 43223121 C T SLC14A2 Missense_Mutation p.A384V 0.22 tolerated(0.22) benign(0.027) TCGA-67-3771-01 18 43669547 43669547 C G ATP5A1 Missense_Mutation p.G212A 0.14 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-67-3771-01 18 44560240 44560240 A T TCEB3B Missense_Mutation p.S466T 0.15 deleterious(0.01) benign(0.165) TCGA-67-3771-01 18 54358470 54358471 - T WDR7 Frame_Shift_Ins p.L248Ffs*7 0.18 TCGA-67-3771-01 18 55024197 55024197 A G ST8SIA3 Missense_Mutation p.N119S 0.24 benign(0.002) TCGA-67-3771-01 18 61060776 61060776 C T VPS4B Missense_Mutation p.G367R 0.12 deleterious(0.04) possibly_damaging(0.801) TCGA-67-3771-01 18 61264475 61264475 G A SERPINB13 Missense_Mutation p.G352S 0.16 tolerated(0.73) benign(0.093) TCGA-67-3771-01 18 61305166 61305166 G A SERPINB4 Silent p.S320S 0.24 TCGA-67-3771-01 18 63547767 63547767 G - CDH7 Frame_Shift_Del p.F666Lfs*6 0.24 TCGA-67-3771-01 18 65180123 65180123 G A DSEL Missense_Mutation p.L585F 0.10 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 18 7231811 7231811 G T LRRC30 Silent p.P225P 0.23 TCGA-67-3771-01 18 72346391 72346391 C G ZNF407 Missense_Mutation p.S1139C 0.19 deleterious(0.01) possibly_damaging(0.862) TCGA-67-3771-01 18 74091694 74091694 G A ZNF516 Silent p.P792P 0.21 TCGA-67-3771-01 18 76754521 76754521 G T SALL3 Nonsense_Mutation p.E844* 0.20 TCGA-67-3771-01 18 77473099 77473099 G T CTDP1 Missense_Mutation p.A331S 0.19 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 18 77894747 77894747 C G ADNP2 Nonsense_Mutation p.S484* 0.12 TCGA-67-3771-01 19 10205580 10205580 G T ANGPTL6 Missense_Mutation p.P206Q 0.50 tolerated(0.07) benign(0.243) TCGA-67-3771-01 19 10602328 10602328 C T KEAP1 Missense_Mutation p.G417E 0.54 deleterious(0) probably_damaging(0.996) TCGA-67-3771-01 19 11138587 11138588 - A SMARCA4 Nonsense_Mutation p.Y1115* 0.29 TCGA-67-3771-01 19 11238690 11238691 GC - LDLR Frame_Shift_Del p.D774Rfs*7 0.11 TCGA-67-3771-01 19 11687567 11687567 G A ACP5 Missense_Mutation p.S118F 0.16 deleterious(0) probably_damaging(0.972) TCGA-67-3771-01 19 11687568 11687568 A T ACP5 Missense_Mutation p.S118T 0.16 tolerated(0.23) benign(0.011) TCGA-67-3771-01 19 11917571 11917571 A T ZNF491 Missense_Mutation p.E268V 0.52 deleterious(0.03) probably_damaging(0.957) TCGA-67-3771-01 19 12502558 12502558 C A ZNF799 Silent p.T218T 0.44 TCGA-67-3771-01 19 14077445 14077445 C T RFX1 Silent p.E617E 0.39 TCGA-67-3771-01 19 14710889 14710889 C G CLEC17A Silent p.G263G 0.29 TCGA-67-3771-01 19 1483437 1483437 T C PCSK4 Missense_Mutation p.R473G 0.56 deleterious(0.04) benign(0.002) TCGA-67-3771-01 19 15366997 15366997 C G BRD4 Missense_Mutation p.K543N 0.24 benign(0.403) TCGA-67-3771-01 19 15756552 15756552 C G CYP4F3 Silent p.L74L 0.13 TCGA-67-3771-01 19 17420415 17420415 G A DDA1 5'UTR 0.24 TCGA-67-3771-01 19 17893966 17893966 C A FCHO1 Missense_Mutation p.A693D 0.43 tolerated(0.11) benign(0.35) TCGA-67-3771-01 19 18092827 18092827 A T KCNN1 Missense_Mutation p.T270S 0.21 deleterious(0.04) benign(0.024) TCGA-67-3771-01 19 20118030 20118030 G A ZNF682 Missense_Mutation p.S94L 0.22 tolerated(0.13) benign(0) TCGA-67-3771-01 19 21909431 21909431 A T ZNF100 3'UTR 0.25 TCGA-67-3771-01 19 22363185 22363185 C A ZNF676 Missense_Mutation p.G445V 0.26 deleterious(0.02) possibly_damaging(0.463) TCGA-67-3771-01 19 24310356 24310356 C G ZNF254 Nonsense_Mutation p.Y518* 0.46 TCGA-67-3771-01 19 2832300 2832300 G A ZNF554 Splice_Site p.X85_splice 0.60 TCGA-67-3771-01 19 31769448 31769448 A G TSHZ3 Silent p.S417S 0.29 TCGA-67-3771-01 19 35804322 35804322 G C MAG Missense_Mutation p.E616Q 0.17 deleterious(0.01) probably_damaging(0.965) TCGA-67-3771-01 19 35823739 35823739 G T CD22 Silent p.P108P 0.14 TCGA-67-3771-01 19 36053418 36053418 G T ATP4A Nonsense_Mutation p.C113* 0.17 TCGA-67-3771-01 19 36205667 36205667 C T ZBTB32 Silent p.L47L 0.16 TCGA-67-3771-01 19 38190715 38190715 C T ZNF607 Missense_Mutation p.R106K 0.19 tolerated(0.39) benign(0.034) TCGA-67-3771-01 19 38934893 38934893 C G RYR1 Missense_Mutation p.R177G 0.11 probably_damaging(0.999) TCGA-67-3771-01 19 39881962 39881962 G A MED29 5'UTR 0.19 TCGA-67-3771-01 19 39898382 39898382 G T ZFP36 Splice_Site p.X15_splice 0.35 TCGA-67-3771-01 19 39914254 39914254 C T PLEKHG2 Nonsense_Mutation p.Q854* 0.32 TCGA-67-3771-01 19 42407924 42407924 G T ARHGEF1 Silent p.L650L 0.35 TCGA-67-3771-01 19 42621437 42621437 C A POU2F2 Missense_Mutation p.A90S 0.23 tolerated(0.77) benign(0.067) TCGA-67-3771-01 19 42730041 42730041 G C ZNF526 Missense_Mutation p.G496R 0.17 deleterious(0) probably_damaging(0.971) TCGA-67-3771-01 19 42791043 42791043 G T CIC Missense_Mutation p.S63I 0.27 possibly_damaging(0.791) TCGA-67-3771-01 19 43530537 43530537 G A PSG11 5'UTR 0.65 TCGA-67-3771-01 19 43576091 43576091 G T PSG2 Missense_Mutation p.P242H 0.23 deleterious(0) probably_damaging(0.962) TCGA-67-3771-01 19 43576092 43576092 G T PSG2 Missense_Mutation p.P242T 0.22 deleterious(0) possibly_damaging(0.727) TCGA-67-3771-01 19 44096300 44096300 C A IRGQ Missense_Mutation p.G584C 0.18 tolerated(0.14) probably_damaging(1) TCGA-67-3771-01 19 45593530 45593530 C T GEMIN7 Missense_Mutation p.S53F 0.14 tolerated(0.11) benign(0.006) TCGA-67-3771-01 19 46094344 46094344 C A GPR4 Nonsense_Mutation p.E261* 0.35 TCGA-67-3771-01 19 46387917 46387917 C T IRF2BP1 Silent p.R372R 0.14 TCGA-67-3771-01 19 46443465 46443465 C A NOVA2 Missense_Mutation p.G379C 0.36 tolerated(0.18) benign(0.04) TCGA-67-3771-01 19 47193890 47193890 C A PRKD2 Missense_Mutation p.E592D 0.16 deleterious(0.02) benign(0.322) TCGA-67-3771-01 19 48578088 48578088 G A PLA2G4C Silent p.L324L 0.18 TCGA-67-3771-01 19 49340593 49340593 C T PLEKHA4 Missense_Mutation p.E765K 0.18 deleterious_low_confidence(0) benign(0.359) TCGA-67-3771-01 19 49357336 49357336 C G PLEKHA4 Silent p.L368L 0.07 TCGA-67-3771-01 19 49552136 49552136 G C CGB8 5'UTR 0.19 TCGA-67-3771-01 19 49646213 49646225 GGAGATGGTCTCG - PPFIA3 Frame_Shift_Del p.Q899Hfs*20 0.23 TCGA-67-3771-01 19 50360333 50360333 C T PTOV1 Silent p.Y220Y 0.20 TCGA-67-3771-01 19 50368512 50368512 G C PNKP Missense_Mutation p.L124V 0.16 tolerated(0.3) benign(0.018) TCGA-67-3771-01 19 50549823 50549823 G A ZNF473 Missense_Mutation p.G708E 0.18 tolerated(0.05) probably_damaging(0.972) TCGA-67-3771-01 19 50945490 50945490 C A MYBPC2 Silent p.I274I 0.38 TCGA-67-3771-01 19 51738435 51738435 G T CD33 Missense_Mutation p.V257L 0.29 tolerated(0.37) benign(0.18) TCGA-67-3771-01 19 51742776 51742776 C A CD33 Missense_Mutation p.H310N 0.38 deleterious(0.03) benign(0.222) TCGA-67-3771-01 19 51994903 51994903 G T SIGLEC12 Missense_Mutation p.P594T 0.36 tolerated(0.43) benign(0.258) TCGA-67-3771-01 19 52147285 52147285 C A SIGLEC14 Silent p.L253L 0.39 TCGA-67-3771-01 19 52272003 52272003 T A FPR2 Missense_Mutation p.V31E 0.14 deleterious(0) possibly_damaging(0.757) TCGA-67-3771-01 19 52272902 52272902 C A FPR2 Missense_Mutation p.P331T 0.13 tolerated(0.45) benign(0.004) TCGA-67-3771-01 19 52327146 52327146 T A FPR3 Missense_Mutation p.W49R 0.43 deleterious(0) probably_damaging(1) TCGA-67-3771-01 19 52394608 52394608 G C ZNF649 Missense_Mutation p.P261A 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-67-3771-01 19 52719320 52719320 G T PPP2R1A Missense_Mutation p.C329F 0.23 tolerated(0.05) benign(0.022) TCGA-67-3771-01 19 53572843 53572843 C A ZNF160 Missense_Mutation p.C315F 0.14 deleterious(0) probably_damaging(0.998) TCGA-67-3771-01 19 54403931 54403931 G T PRKCG Missense_Mutation p.M501I 0.33 deleterious(0) probably_damaging(0.99) TCGA-67-3771-01 19 54967885 54967885 G A LENG8 Missense_Mutation p.E506K 0.16 tolerated(0.08) benign(0.175) TCGA-67-3771-01 19 55221963 55221963 C T AC098784.2 3'Flank 0.18 TCGA-67-3771-01 19 55221965 55221965 G A AC098784.2 3'Flank 0.17 TCGA-67-3771-01 19 55327927 55327927 C A KIR3DL1 5'UTR 0.59 TCGA-67-3771-01 19 55668986 55668986 G A TNNI3 5'UTR 0.35 TCGA-67-3771-01 19 55670723 55670723 C A DNAAF3 Missense_Mutation p.A512S 0.10 tolerated(0.16) benign(0.098) TCGA-67-3771-01 19 55677957 55677957 C T DNAAF3 Silent p.V20V 0.16 TCGA-67-3771-01 19 55993190 55993190 C T ZNF628 Silent p.P210P 0.36 TCGA-67-3771-01 19 56382250 56382250 G A NLRP4 Silent p.L804L 0.23 TCGA-67-3771-01 19 56544115 56544115 G C NLRP5 Silent p.L805L 0.18 TCGA-67-3771-01 19 57649865 57649865 C G ZIM3 Missense_Mutation p.E39D 0.19 deleterious(0) probably_damaging(0.939) TCGA-67-3771-01 19 57744834 57744834 G T AURKC Nonsense_Mutation p.E148* 0.15 TCGA-67-3771-01 19 57910783 57910783 C G ZNF548 Nonsense_Mutation p.Y388* 0.14 TCGA-67-3771-01 19 58087249 58087249 C A ZNF416 Missense_Mutation p.W42L 0.34 deleterious(0) probably_damaging(1) TCGA-67-3771-01 19 58565262 58565268 CCCGGGA - ZSCAN1 Frame_Shift_Del p.P357Rfs*91 0.42 TCGA-67-3771-01 19 58598331 58598331 C A ZSCAN18 Missense_Mutation p.W285C 0.22 deleterious(0) probably_damaging(0.998) TCGA-67-3771-01 19 8982214 8982214 G T MUC16 Missense_Mutation p.H14021N 0.32 possibly_damaging(0.733) TCGA-67-3771-01 19 9072073 9072073 C A MUC16 Nonsense_Mutation p.E5125* 0.43 TCGA-67-3771-01 19 9529243 9529243 G C ZNF266 5'UTR 0.38 TCGA-67-3771-01 1 103487276 103487276 G C COL11A1 Missense_Mutation p.A432G 0.25 probably_damaging(0.998) TCGA-67-3771-01 1 104114738 104114738 C T AMY2B Missense_Mutation p.P59S 0.20 deleterious(0) possibly_damaging(0.585) TCGA-67-3771-01 1 104120405 104120405 G T AMY2B Silent p.G428G 0.16 TCGA-67-3771-01 1 108307757 108307757 C T VAV3 Missense_Mutation p.A288T 0.23 deleterious(0) probably_damaging(1) TCGA-67-3771-01 1 110030427 110030427 G A ATXN7L2 Splice_Site p.X234_splice 0.07 TCGA-67-3771-01 1 110551679 110551679 G A AHCYL1 Missense_Mutation p.M48I 0.22 deleterious_low_confidence(0.02) benign(0.017) TCGA-67-3771-01 1 11087442 11087442 C T MASP2 Missense_Mutation p.E521K 0.52 tolerated(0.27) probably_damaging(0.941) TCGA-67-3771-01 1 111147283 111147283 C G KCNA2 Missense_Mutation p.G41A 0.23 deleterious(0) probably_damaging(0.997) TCGA-67-3771-01 1 112031646 112031646 T G ADORA3 Missense_Mutation p.D153A 0.24 deleterious_low_confidence(0) benign(0.275) TCGA-67-3771-01 1 11297963 11297963 C A MTOR Silent p.V715V 0.39 TCGA-67-3771-01 1 117491979 117491979 G T PTGFRN Missense_Mutation p.R333L 0.22 tolerated(0.35) possibly_damaging(0.495) TCGA-67-3771-01 1 117552698 117552698 A T CD101 Silent p.R90R 0.13 TCGA-67-3771-01 1 12374318 12374318 G A VPS13D Missense_Mutation p.C2361Y 0.46 possibly_damaging(0.839) TCGA-67-3771-01 1 144923746 144923746 C T PDE4DIP Missense_Mutation p.D238N 0.07 tolerated(0.06) benign(0.245) TCGA-67-3771-01 1 147230857 147230857 C G GJA5 Missense_Mutation p.E164Q 0.11 deleterious(0) probably_damaging(1) TCGA-67-3771-01 1 149762804 149762804 C G FCGR1A Missense_Mutation p.P286A 0.07 tolerated(0.18) benign(0.114) TCGA-67-3771-01 1 149858701 149858701 G C HIST2H2AC Silent p.L59L 0.06 TCGA-67-3771-01 1 149882451 149882451 G A SV2A Silent p.S294S 0.14 TCGA-67-3771-01 1 150437062 150437062 A G RPRD2 Missense_Mutation p.S491G 0.57 tolerated_low_confidence(0.13) benign(0.001) TCGA-67-3771-01 1 150463952 150463952 G A TARS2 Missense_Mutation p.E199K 0.11 deleterious(0.04) benign(0.014) TCGA-67-3771-01 1 150935522 150935522 C G SETDB1 Missense_Mutation p.Q1122E 0.40 deleterious_low_confidence(0.01) benign(0.055) TCGA-67-3771-01 1 151641082 151641082 G A SNX27 Missense_Mutation p.D374N 0.13 deleterious(0.05) benign(0.103) TCGA-67-3771-01 1 152057927 152057927 G T TCHHL1 Nonsense_Mutation p.S744* 0.12 TCGA-67-3771-01 1 152059275 152059275 T C TCHHL1 Missense_Mutation p.R295G 0.50 tolerated(1) benign(0) TCGA-67-3771-01 1 152083697 152083697 C G TCHH Missense_Mutation p.E666Q 0.35 unknown(0) TCGA-67-3771-01 1 152281538 152281538 G T FLG Missense_Mutation p.H1942N 0.40 benign(0.107) TCGA-67-3771-01 1 152285143 152285143 C A FLG Missense_Mutation p.R740L 0.12 possibly_damaging(0.87) TCGA-67-3771-01 1 152538337 152538337 G T LCE3E 3'UTR 0.10 TCGA-67-3771-01 1 152733553 152733553 A T KPRP Missense_Mutation p.S497C 0.58 tolerated_low_confidence(1) benign(0.001) TCGA-67-3771-01 1 153303170 153303170 C A PGLYRP4 3'UTR 0.49 TCGA-67-3771-01 1 154067433 154067433 T G NUP210L Missense_Mutation p.Q722P 0.15 tolerated(0.13) benign(0.105) TCGA-67-3771-01 1 154931475 154931475 C T PYGO2 Missense_Mutation p.R334Q 0.09 tolerated(0.18) possibly_damaging(0.857) TCGA-67-3771-01 1 155838184 155838184 G C SYT11 Missense_Mutation p.D155H 0.13 tolerated(0.12) possibly_damaging(0.717) TCGA-67-3771-01 1 156384530 156384530 C G C1orf61 Silent p.A29A 0.23 TCGA-67-3771-01 1 156437954 156437954 G A MEF2D Missense_Mutation p.A462V 0.11 tolerated(0.28) benign(0.05) TCGA-67-3771-01 1 156554719 156554719 G T TTC24 Missense_Mutation p.E434D 0.64 tolerated(0.42) benign(0.084) TCGA-67-3771-01 1 1565853 1565853 C G MIB2 Silent p.L1052L 0.33 TCGA-67-3771-01 1 156618623 156618623 C T BCAN Missense_Mutation p.H345Y 0.51 tolerated(0.07) benign(0.006) TCGA-67-3771-01 1 156776986 156776986 A C SH2D2A Missense_Mutation p.L395R 0.42 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-67-3771-01 1 156776988 156776988 G A SH2D2A Silent p.P394P 0.41 TCGA-67-3771-01 1 156779566 156779566 C T SH2D2A Missense_Mutation p.E211K 0.15 tolerated(0.09) benign(0.076) TCGA-67-3771-01 1 157491004 157491004 C T FCRL5 Missense_Mutation p.C773Y 0.10 deleterious(0.04) probably_damaging(1) TCGA-67-3771-01 1 157551323 157551323 G T FCRL4 Nonsense_Mutation p.S416* 0.51 TCGA-67-3771-01 1 158687653 158687653 G T OR6K3 Missense_Mutation p.L85I 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-67-3771-01 1 158988421 158988421 G T IFI16 Missense_Mutation p.G318W 0.10 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 1 160063737 160063737 G A IGSF8 Missense_Mutation p.R223W 0.11 deleterious(0.02) possibly_damaging(0.847) TCGA-67-3771-01 1 160098582 160098582 C A ATP1A2 Silent p.V386V 0.11 TCGA-67-3771-01 1 160164856 160164856 G C CASQ1 Missense_Mutation p.E174Q 0.64 deleterious(0.02) benign(0.443) TCGA-67-3771-01 1 160209914 160209914 G C DCAF8 Nonsense_Mutation p.S99* 0.43 TCGA-67-3771-01 1 161495729 161495729 C A HSPA6 Silent p.T427T 0.60 TCGA-67-3771-01 1 161496369 161496369 G A HSPA6 Missense_Mutation p.E641K 0.08 deleterious_low_confidence(0) possibly_damaging(0.616) TCGA-67-3771-01 1 161519645 161519645 C A FCGR3A 5'UTR 0.35 TCGA-67-3771-01 1 16259961 16259973 AGAATTCGTCCCA - SPEN Frame_Shift_Del p.N2410Kfs*46 0.11 TCGA-67-3771-01 1 1647827 1647827 T A CDK11A Missense_Mutation p.Q149L 0.20 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-67-3771-01 1 167830153 167830153 C G ADCY10 Missense_Mutation p.D589H 0.14 deleterious(0.01) possibly_damaging(0.823) TCGA-67-3771-01 1 16918669 16918669 G A NBPF1 5'UTR 0.11 TCGA-67-3771-01 1 169528470 169528470 C T F5 Silent p.V217V 0.50 TCGA-67-3771-01 1 169562881 169562881 G A SELP Missense_Mutation p.T790M 0.16 tolerated(0.11) benign(0.206) TCGA-67-3771-01 1 171250036 171250036 C A FMO1 Missense_Mutation p.L247I 0.18 deleterious(0.05) probably_damaging(0.993) TCGA-67-3771-01 1 171756899 171756899 G A METTL13 Missense_Mutation p.D380N 0.10 tolerated(0.06) possibly_damaging(0.609) TCGA-67-3771-01 1 173567171 173567171 C A SLC9C2 Missense_Mutation p.V77L 0.20 deleterious(0.03) possibly_damaging(0.658) TCGA-67-3771-01 1 173703396 173703396 G C KLHL20 Missense_Mutation p.D190H 0.35 tolerated(0.77) probably_damaging(0.996) TCGA-67-3771-01 1 17431488 17431488 C A PADI2 Missense_Mutation p.R54L 0.62 tolerated(0.54) benign(0.004) TCGA-67-3771-01 1 176838157 176838157 G T ASTN1 Missense_Mutation p.A1157E 0.63 deleterious(0) probably_damaging(0.998) TCGA-67-3771-01 1 176915180 176915180 C T ASTN1 Missense_Mutation p.D711N 0.14 tolerated(0.23) benign(0.124) TCGA-67-3771-01 1 179077723 179077723 C G ABL2 Missense_Mutation p.K893N 0.44 tolerated_low_confidence(0.08) benign(0.021) TCGA-67-3771-01 1 186014906 186014906 C T HMCN1 Missense_Mutation p.P2131S 0.11 probably_damaging(0.998) TCGA-67-3771-01 1 190067152 190067152 C A BRINP3 Missense_Mutation p.S766I 0.09 deleterious_low_confidence(0) possibly_damaging(0.678) TCGA-67-3771-01 1 190068179 190068179 G T BRINP3 Missense_Mutation p.H424N 0.31 deleterious(0.03) benign(0.071) TCGA-67-3771-01 1 19491400 19491400 G C UBR4 Silent p.L1468L 0.34 TCGA-67-3771-01 1 197704817 197704817 G A DENND1B Intron 0.53 TCGA-67-3771-01 1 200017620 200017620 G T NR5A2 Missense_Mutation p.G262C 0.13 deleterious(0.02) benign(0.003) TCGA-67-3771-01 1 200017621 200017621 G T NR5A2 Missense_Mutation p.G262V 0.13 tolerated(0.14) benign(0.007) TCGA-67-3771-01 1 200730088 200730088 C G CAMSAP2 Silent p.L87L 0.12 TCGA-67-3771-01 1 201356047 201356047 G C LAD1 Missense_Mutation p.R148G 0.07 tolerated(0.06) benign(0.04) TCGA-67-3771-01 1 203455883 203455883 C T PRELP Silent p.D341D 0.27 TCGA-67-3771-01 1 204086867 204086867 G T SOX13 Intron 0.42 TCGA-67-3771-01 1 204183019 204183019 C G GOLT1A Missense_Mutation p.E6Q 0.20 deleterious(0) benign(0.019) TCGA-67-3771-01 1 20879649 20879649 G A FAM43B Silent p.Q61Q 0.32 TCGA-67-3771-01 1 21036154 21036154 G A KIF17 Silent p.I216I 0.17 TCGA-67-3771-01 1 212798989 212798989 C T FAM71A Missense_Mutation p.A257V 0.09 tolerated(0.79) benign(0) TCGA-67-3771-01 1 214551349 214551349 G A PTPN14 Missense_Mutation p.R881W 0.38 tolerated(0.08) possibly_damaging(0.792) TCGA-67-3771-01 1 214557780 214557780 T A PTPN14 Missense_Mutation p.N473I 0.48 deleterious(0) possibly_damaging(0.589) TCGA-67-3771-01 1 216348824 216348824 G A USH2A Missense_Mutation p.A1466V 0.27 possibly_damaging(0.505) TCGA-67-3771-01 1 217784228 217784228 G A GPATCH2 Intron 0.21 TCGA-67-3771-01 1 220825366 220825366 G C MARK1 Missense_Mutation p.G537A 0.14 tolerated(0.5) benign(0.001) TCGA-67-3771-01 1 22180713 22180713 T A HSPG2 Missense_Mutation p.T2138S 0.30 benign(0.001) TCGA-67-3771-01 1 22211041 22211041 T C HSPG2 Missense_Mutation p.D545G 0.21 benign(0.325) TCGA-67-3771-01 1 224377623 224377623 G A DEGS1 Missense_Mutation p.D143N 0.13 deleterious(0) probably_damaging(0.996) TCGA-67-3771-01 1 224872505 224872505 G C CNIH3 Missense_Mutation p.R53P 0.06 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-67-3771-01 1 228034056 228034056 G A PRSS38 3'UTR 0.15 TCGA-67-3771-01 1 228109549 228109549 G A WNT9A Silent p.T256T 0.11 TCGA-67-3771-01 1 228363178 228363178 A G IBA57 Silent p.A345A 0.42 TCGA-67-3771-01 1 228559464 228559464 C G OBSCN Missense_Mutation p.I7952M 0.52 benign(0.438) TCGA-67-3771-01 1 230910379 230910379 T A CAPN9 Splice_Site p.X318_splice 0.14 TCGA-67-3771-01 1 234593467 234593467 G A TARBP1 Silent p.L556L 0.59 TCGA-67-3771-01 1 235612020 235612020 A C TBCE Silent p.L509L 0.12 TCGA-67-3771-01 1 236918345 236918345 C T ACTN2 Silent p.I667I 0.17 TCGA-67-3771-01 1 237753224 237753224 A G RYR2 Missense_Mutation p.N1244D 0.36 benign(0.022) TCGA-67-3771-01 1 238050702 238050702 G A ZP4 Missense_Mutation p.P238L 0.14 deleterious(0.02) probably_damaging(0.927) TCGA-67-3771-01 1 238090596 238090596 G C RP11-193H5.1 RNA 0.29 TCGA-67-3771-01 1 24401952 24401952 G A MYOM3 Silent p.I905I 0.16 TCGA-67-3771-01 1 244716037 244716037 G A C1orf101 Missense_Mutation p.G317E 0.54 deleterious(0.04) probably_damaging(0.987) TCGA-67-3771-01 1 2451331 2451331 C T PANK4 Silent p.V254V 0.55 TCGA-67-3771-01 1 247065962 247065962 C T AHCTF1 Missense_Mutation p.E337K 0.20 deleterious(0.03) probably_damaging(0.958) TCGA-67-3771-01 1 247654775 247654775 G A OR2W5 RNA 0.40 TCGA-67-3771-01 1 247695646 247695646 G T OR2C3 Silent p.L56L 0.49 TCGA-67-3771-01 1 247835786 247835786 A G OR13G1 Silent p.C186C 0.11 TCGA-67-3771-01 1 247836167 247836167 G T OR13G1 Missense_Mutation p.F59L 0.56 tolerated(0.19) benign(0.001) TCGA-67-3771-01 1 247875710 247875710 T A OR6F1 Silent p.A116A 0.12 TCGA-67-3771-01 1 248059305 248059305 G T OR2W3 Missense_Mutation p.R139S 0.53 tolerated(0.06) benign(0.038) TCGA-67-3771-01 1 248343411 248343411 A T OR2M2 Missense_Mutation p.N42Y 0.50 deleterious(0) probably_damaging(1) TCGA-67-3771-01 1 248551236 248551236 G T OR2T6 Silent p.G109G 0.15 TCGA-67-3771-01 1 248737412 248737412 A G OR2T34 Missense_Mutation p.I216T 0.23 tolerated(0.06) benign(0.007) TCGA-67-3771-01 1 248813783 248813783 G C OR2T27 Missense_Mutation p.L135V 0.57 deleterious(0.04) possibly_damaging(0.589) TCGA-67-3771-01 1 249144947 249144947 C A ZNF692 Missense_Mutation p.R401L 0.19 deleterious(0) probably_damaging(0.985) TCGA-67-3771-01 1 249208012 249208012 C T PGBD2 Intron 0.14 TCGA-67-3771-01 1 249210873 249210873 G T PGBD2 Missense_Mutation p.M30I 0.16 deleterious(0.05) benign(0) TCGA-67-3771-01 1 2535350 2535350 C T MMEL1 Silent p.E338E 0.21 TCGA-67-3771-01 1 27097629 27097629 G - ARID1A Frame_Shift_Del p.W1073Cfs*20 0.28 TCGA-67-3771-01 1 27720714 27720714 C T GPR3 Silent p.L138L 0.44 TCGA-67-3771-01 1 29609316 29609316 G T PTPRU Missense_Mutation p.G666V 0.43 deleterious(0) benign(0.119) TCGA-67-3771-01 1 31425212 31425212 T G PUM1 Splice_Site p.X864_splice 0.36 TCGA-67-3771-01 1 31732846 31732846 C A SNRNP40 3'UTR 0.31 TCGA-67-3771-01 1 32503611 32503611 C A KHDRBS1 Missense_Mutation p.P361T 0.13 tolerated(0.11) possibly_damaging(0.901) TCGA-67-3771-01 1 32568362 32568362 G A TMEM39B 3'UTR 0.25 TCGA-67-3771-01 1 32739958 32739958 G A LCK Missense_Mutation p.E10K 0.10 tolerated_low_confidence(0.08) benign(0.022) TCGA-67-3771-01 1 3328985 3328985 G T PRDM16 Missense_Mutation p.D742Y 0.49 deleterious(0) probably_damaging(0.966) TCGA-67-3771-01 1 33292344 33292344 C G S100PBP Nonsense_Mutation p.S215* 0.27 TCGA-67-3771-01 1 34033349 34033349 G C CSMD2 Missense_Mutation p.P2719A 0.15 deleterious(0) probably_damaging(0.96) TCGA-67-3771-01 1 3649416 3649416 C T TP73 Missense_Mutation p.R562C 0.56 deleterious(0) possibly_damaging(0.88) TCGA-67-3771-01 1 38188721 38188721 A G EPHA10 Missense_Mutation p.L651P 0.34 deleterious(0) probably_damaging(0.957) TCGA-67-3771-01 1 40777384 40777384 C - COL9A2 Frame_Shift_Del p.D141Tfs*42 0.32 TCGA-67-3771-01 1 41220029 41220029 G A NFYC Intron 0.20 TCGA-67-3771-01 1 47505153 47505153 G A CYP4X1 Missense_Mutation p.R341K 0.40 tolerated(0.26) benign(0.095) TCGA-67-3771-01 1 47882444 47882444 G T FOXE3 Missense_Mutation p.D153Y 0.12 deleterious(0) probably_damaging(0.998) TCGA-67-3771-01 1 62910485 62910485 C G USP1 Missense_Mutation p.Q212E 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-67-3771-01 1 6453348 6453348 C A RP1-202O8.3 5'Flank 0.73 TCGA-67-3771-01 1 6521752 6521752 G C TNFRSF25 Silent p.G341G 0.82 TCGA-67-3771-01 1 65321352 65321352 C G JAK1 Missense_Mutation p.K496N 0.17 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 1 65849892 65849892 C T DNAJC6 Missense_Mutation p.S228L 0.20 deleterious(0) possibly_damaging(0.535) TCGA-67-3771-01 1 68624902 68624903 AA T WLS Frame_Shift_Del p.V134Dfs*62 0.17 TCGA-67-3771-01 1 76216217 76216217 A T ACADM Nonsense_Mutation p.K315* 0.35 TCGA-67-3771-01 1 76343962 76343962 T A MSH4 Missense_Mutation p.I500K 0.38 deleterious(0) benign(0.213) TCGA-67-3771-01 1 76349447 76349447 T A MSH4 Missense_Mutation p.M683K 0.31 deleterious(0) probably_damaging(0.937) TCGA-67-3771-01 1 7805972 7805972 A G CAMTA1 Missense_Mutation p.S1480G 0.24 tolerated(0.12) benign(0.156) TCGA-67-3771-01 1 8425882 8425882 G A RERE Silent p.S479S 0.43 TCGA-67-3771-01 1 84399443 84399443 C A TTLL7 Missense_Mutation p.V299L 0.27 deleterious(0.04) possibly_damaging(0.534) TCGA-67-3771-01 1 86578265 86578265 T C COL24A1 Silent p.G528G 0.22 TCGA-67-3771-01 1 86919069 86919070 GC - CLCA2 Frame_Shift_Del p.A725Sfs*9 0.18 TCGA-67-3771-01 1 89294166 89294166 A G PKN2 Missense_Mutation p.M808V 0.17 deleterious(0.05) benign(0.255) TCGA-67-3771-01 1 9416304 9416304 G C SPSB1 Silent p.A118A 0.58 TCGA-67-3771-01 1 94544950 94544950 C A ABCA4 Silent p.A389A 0.36 TCGA-67-3771-01 1 94564460 94564460 G A ABCA4 Missense_Mutation p.R220C 0.20 deleterious(0.04) possibly_damaging(0.677) TCGA-67-3771-01 20 10286806 10286806 G T SNAP25 Missense_Mutation p.E194D 0.19 tolerated(0.61) benign(0.023) TCGA-67-3771-01 20 16348016 16348016 C G KIF16B Missense_Mutation p.K1318N 0.17 tolerated_low_confidence(0.54) benign(0.017) TCGA-67-3771-01 20 16359917 16359917 C T KIF16B Silent p.Q910Q 0.38 TCGA-67-3771-01 20 18445979 18445979 G C DZANK1 Silent p.V8V 0.20 TCGA-67-3771-01 20 19955398 19955398 C G RIN2 Silent p.L292L 0.09 TCGA-67-3771-01 20 20025969 20025969 C G CRNKL1 Missense_Mutation p.E423Q 0.13 deleterious(0) probably_damaging(0.996) TCGA-67-3771-01 20 21346252 21346252 C G XRN2 Missense_Mutation p.S789C 0.17 deleterious(0.04) benign(0.428) TCGA-67-3771-01 20 30232608 30232608 G C COX4I2 Silent p.R139R 0.17 TCGA-67-3771-01 20 30667605 30667605 G C HCK Missense_Mutation p.D153H 0.28 deleterious(0) probably_damaging(0.974) TCGA-67-3771-01 20 30784777 30784777 C G PLAGL2 Missense_Mutation p.M323I 0.21 tolerated(0.47) benign(0) TCGA-67-3771-01 20 31016158 31016158 C A ASXL1 Missense_Mutation p.S135Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-67-3771-01 20 3127278 3127278 G T FASTKD5 3'UTR 0.40 TCGA-67-3771-01 20 32248157 32248157 G C NECAB3 Missense_Mutation p.F144L 0.09 deleterious(0) probably_damaging(0.998) TCGA-67-3771-01 20 32436305 32436305 T C CHMP4B Missense_Mutation p.Y75H 0.14 tolerated(0.1) benign(0.275) TCGA-67-3771-01 20 3262307 3262307 C T C20orf194 Missense_Mutation p.M864I 0.12 deleterious(0.02) benign(0.004) TCGA-67-3771-01 20 32848288 32848288 G A ASIP Silent p.L36L 0.13 TCGA-67-3771-01 20 33328826 33328826 G A NCOA6 Missense_Mutation p.S1745F 0.33 probably_damaging(0.987) TCGA-67-3771-01 20 33875629 33875629 G C FAM83C Missense_Mutation p.S318C 0.23 tolerated(0.11) possibly_damaging(0.711) TCGA-67-3771-01 20 34295058 34295058 T C RBM39 Missense_Mutation p.M431V 0.26 deleterious(0) benign(0.44) TCGA-67-3771-01 20 35381109 35381109 G A DSN1 3'UTR 0.20 TCGA-67-3771-01 20 3541497 3541497 C G ATRN Missense_Mutation p.I464M 0.21 deleterious(0.01) benign(0.206) TCGA-67-3771-01 20 36694555 36694555 G T RPRD1B Missense_Mutation p.R243L 0.14 deleterious(0) probably_damaging(0.932) TCGA-67-3771-01 20 36870200 36870200 G A KIAA1755 Silent p.P111P 0.15 TCGA-67-3771-01 20 36870201 36870201 G T KIAA1755 Missense_Mutation p.P111H 0.15 deleterious(0) probably_damaging(0.95) TCGA-67-3771-01 20 37121587 37121587 G A RALGAPB Missense_Mutation p.M67I 0.28 deleterious(0) probably_damaging(0.981) TCGA-67-3771-01 20 37357156 37357156 G T SLC32A1 Missense_Mutation p.K484N 0.38 tolerated(0.11) benign(0.013) TCGA-67-3771-01 20 37546891 37546891 G T PPP1R16B Missense_Mutation p.R429L 0.25 tolerated(0.3) benign(0.007) TCGA-67-3771-01 20 39990940 39990940 G A EMILIN3 Silent p.L423L 0.15 TCGA-67-3771-01 20 40118549 40118549 G A CHD6 Missense_Mutation p.P517S 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-67-3771-01 20 43836371 43836371 G - SEMG1 Frame_Shift_Del p.D145Ifs*27 0.18 TCGA-67-3771-01 20 44054330 44054330 C G PIGT Missense_Mutation p.T534S 0.11 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 20 45002126 45002126 C A ELMO2 Missense_Mutation p.R443L 0.25 deleterious(0.03) benign(0.342) TCGA-67-3771-01 20 4680383 4680383 A C PRNP Missense_Mutation p.N173H 0.12 deleterious(0.02) possibly_damaging(0.879) TCGA-67-3771-01 20 47886918 47886918 G C ZNFX1 Silent p.L477L 0.13 TCGA-67-3771-01 20 49458380 49458380 C T BCAS4 Silent p.A144A 0.34 TCGA-67-3771-01 20 51872150 51872150 G C TSHZ2 Missense_Mutation p.C718S 0.31 tolerated_low_confidence(0.88) benign(0.001) TCGA-67-3771-01 20 52774070 52774070 C T CYP24A1 Missense_Mutation p.D431N 0.13 tolerated(0.35) benign(0.011) TCGA-67-3771-01 20 56138681 56138681 G T PCK1 Missense_Mutation p.A287S 0.30 deleterious(0.02) probably_damaging(0.995) TCGA-67-3771-01 20 56140121 56140121 C G PCK1 Silent p.L448L 0.11 TCGA-67-3771-01 20 57569177 57569177 A G NELFCD Missense_Mutation p.I550V 0.16 tolerated(0.29) probably_damaging(0.936) TCGA-67-3771-01 20 57768421 57768421 C G ZNF831 Missense_Mutation p.P783A 0.30 tolerated(0.33) benign(0.217) TCGA-67-3771-01 20 57769224 57769224 G T ZNF831 Missense_Mutation p.E1050D 0.37 tolerated(0.24) benign(0.01) TCGA-67-3771-01 20 60890259 60890259 C A LAMA5 Missense_Mutation p.E2624D 0.27 benign(0.001) TCGA-67-3771-01 20 61386117 61386117 C T NTSR1 Silent p.V265V 0.08 TCGA-67-3771-01 20 61461738 61461738 C T COL9A3 Silent p.P396P 0.38 TCGA-67-3771-01 20 61981575 61981575 G C CHRNA4 Missense_Mutation p.S396R 0.25 tolerated(0.17) possibly_damaging(0.598) TCGA-67-3771-01 20 62701953 62701953 G T TCEA2 Missense_Mutation p.G262C 0.36 deleterious(0) probably_damaging(0.954) TCGA-67-3771-01 20 8745806 8745806 G A PLCB1 Missense_Mutation p.E911K 0.19 deleterious(0.03) possibly_damaging(0.727) TCGA-67-3771-01 20 9498764 9498764 C G LAMP5 Missense_Mutation p.Q185E 0.12 tolerated(0.52) possibly_damaging(0.566) TCGA-67-3771-01 21 15558333 15558333 T C LIPI Missense_Mutation p.I185V 0.63 tolerated(0.1) benign(0.163) TCGA-67-3771-01 21 27086965 27086965 C A JAM2 3'Flank 0.40 TCGA-67-3771-01 21 28216601 28216601 C G ADAMTS1 Missense_Mutation p.E225Q 0.19 tolerated(0.63) benign(0.002) TCGA-67-3771-01 21 30304987 30304987 C A LTN1 Splice_Site p.X1672_splice 0.14 TCGA-67-3771-01 21 31538717 31538717 G A CLDN17 Silent p.L73L 0.17 TCGA-67-3771-01 21 31744334 31744334 G C KRTAP13-2 Missense_Mutation p.C66W 0.24 deleterious(0) probably_damaging(0.938) TCGA-67-3771-01 21 31813004 31813004 G A KRTAP15-1 Missense_Mutation p.S120N 0.22 tolerated(0.6) benign(0.04) TCGA-67-3771-01 21 36231792 36231792 C T RUNX1 Missense_Mutation p.D198N 0.20 deleterious(0.02) possibly_damaging(0.633) TCGA-67-3771-01 21 39086866 39086866 C A KCNJ6 Missense_Mutation p.K198N 0.27 tolerated(0.07) benign(0.401) TCGA-67-3771-01 21 40194759 40194759 C T ETS2 Silent p.F452F 0.30 TCGA-67-3771-01 21 43508578 43508578 G C UMODL1 Missense_Mutation p.V260L 0.33 tolerated(0.07) benign(0.001) TCGA-67-3771-01 21 43621828 43621828 C G ABCG1 Missense_Mutation p.P15A 0.44 tolerated_low_confidence(0.21) unknown(0) TCGA-67-3771-01 21 46032130 46032130 G T KRTAP10-8 Missense_Mutation p.G38V 0.28 tolerated(0.07) possibly_damaging(0.788) TCGA-67-3771-01 21 46066935 46066935 C A KRTAP10-11 Missense_Mutation p.A187D 0.31 tolerated(0.16) unknown(0) TCGA-67-3771-01 22 19175510 19175510 C G CLTCL1 Missense_Mutation p.E1473Q 0.14 deleterious(0.01) benign(0.024) TCGA-67-3771-01 22 22280013 22280013 G A PPM1F Missense_Mutation p.A305V 0.08 deleterious(0.01) possibly_damaging(0.862) TCGA-67-3771-01 22 22599589 22599589 T G VPREB1 Missense_Mutation p.V93G 0.35 tolerated(0.12) possibly_damaging(0.626) TCGA-67-3771-01 22 22599591 22599591 G C VPREB1 Missense_Mutation p.A94P 0.36 deleterious(0.01) probably_damaging(0.933) TCGA-67-3771-01 22 22842568 22842568 G A ZNF280B Nonsense_Mutation p.Q386* 0.14 TCGA-67-3771-01 22 22843099 22843099 G C ZNF280B Missense_Mutation p.H209D 0.17 tolerated(0.19) benign(0.405) TCGA-67-3771-01 22 22892257 22892257 C G PRAME Missense_Mutation p.E282Q 0.13 tolerated(0.55) benign(0.142) TCGA-67-3771-01 22 24580910 24580910 T G SUSD2 Splice_Site p.X261_splice 0.28 TCGA-67-3771-01 22 26242238 26242238 C G MYO18B Missense_Mutation p.I1180M 0.40 deleterious(0.02) probably_damaging(0.967) TCGA-67-3771-01 22 31722972 31722972 C G PATZ1 Missense_Mutation p.E657Q 0.09 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-67-3771-01 22 31850252 31850252 C T EIF4ENIF1 Missense_Mutation p.E464K 0.17 deleterious(0.01) possibly_damaging(0.67) TCGA-67-3771-01 22 32217561 32217561 G A DEPDC5 Silent p.Q648Q 0.33 TCGA-67-3771-01 22 33673054 33673054 C G LARGE Missense_Mutation p.D689H 0.19 tolerated(0.12) probably_damaging(1) TCGA-67-3771-01 22 35804479 35804479 G T MCM5 Missense_Mutation p.Q225H 0.27 deleterious(0) probably_damaging(0.98) TCGA-67-3771-01 22 37098576 37098576 C T CACNG2 Missense_Mutation p.G16S 0.34 deleterious(0.04) probably_damaging(0.999) TCGA-67-3771-01 22 37603250 37603250 G T SSTR3 Missense_Mutation p.P198Q 0.53 deleterious(0) probably_damaging(0.97) TCGA-67-3771-01 22 38051611 38051611 G A SH3BP1 Missense_Mutation p.E676K 0.62 tolerated_low_confidence(0.08) unknown(0) TCGA-67-3771-01 22 38891885 38891885 C A DDX17 Missense_Mutation p.D266Y 0.13 deleterious(0.01) probably_damaging(0.946) TCGA-67-3771-01 22 39112972 39112972 G C GTPBP1 Missense_Mutation p.M267I 0.09 deleterious(0) benign(0.304) TCGA-67-3771-01 22 39884738 39884738 G T MGAT3 Silent p.G462G 0.53 TCGA-67-3771-01 22 42321443 42321443 G A TNFRSF13C Silent p.V161V 0.15 TCGA-67-3771-01 22 46640973 46640973 C G CDPF1 3'UTR 0.16 TCGA-67-3771-01 2 105859435 105859435 G A GPR45 3'UTR 0.13 TCGA-67-3771-01 2 106498084 106498084 C G NCK2 Missense_Mutation p.S176C 0.07 tolerated(0.05) benign(0.321) TCGA-67-3771-01 2 108609503 108609503 G A SLC5A7 Missense_Mutation p.G123E 0.20 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 2 110048969 110048969 C G SH3RF3 Silent p.L472L 0.44 TCGA-67-3771-01 2 111395637 111395637 C T BUB1 Silent p.L1054L 0.32 TCGA-67-3771-01 2 111425235 111425235 G C BUB1 Nonsense_Mutation p.S223* 0.13 TCGA-67-3771-01 2 113286318 113286318 A T TTL Silent p.P360P 0.33 TCGA-67-3771-01 2 113539390 113539390 T C IL1A Missense_Mutation p.H37R 0.41 deleterious(0.01) benign(0.007) TCGA-67-3771-01 2 113955199 113955199 C T PSD4 Silent p.L815L 0.30 TCGA-67-3771-01 2 118579310 118579310 G A DDX18 Silent p.R245R 0.23 TCGA-67-3771-01 2 121747078 121747078 G T GLI2 Silent p.G1196G 0.42 TCGA-67-3771-01 2 128066163 128066163 G C MAP3K2 Missense_Mutation p.I544M 0.16 deleterious(0) probably_damaging(0.921) TCGA-67-3771-01 2 128471546 128471546 C T WDR33 Silent p.R973R 0.29 TCGA-67-3771-01 2 128610524 128610524 T A POLR2D Nonsense_Mutation p.R77* 0.13 TCGA-67-3771-01 2 130899923 130899923 G A CCDC74B Silent p.A109A 0.25 TCGA-67-3771-01 2 132288183 132288183 C T CCDC74A Silent p.A109A 0.11 TCGA-67-3771-01 2 133403100 133403100 T A GPR39 Missense_Mutation p.L428H 0.39 tolerated_low_confidence(0.54) benign(0.343) TCGA-67-3771-01 2 135745530 135745530 C G MAP3K19 Missense_Mutation p.K304N 0.11 tolerated(0.51) benign(0.018) TCGA-67-3771-01 2 136540316 136540316 C G UBXN4 Intron 0.15 TCGA-67-3771-01 2 136570072 136570072 G T LCT Nonsense_Mutation p.S721* 0.11 TCGA-67-3771-01 2 136872465 136872465 C G CXCR4 Missense_Mutation p.E349Q 0.27 tolerated_low_confidence(0.28) unknown(0) TCGA-67-3771-01 2 141773472 141773472 C G LRP1B Missense_Mutation p.W661C 0.13 probably_damaging(0.926) TCGA-67-3771-01 2 1418261 1418261 A G TPO Silent p.K27K 0.59 TCGA-67-3771-01 2 150071151 150071151 G C LYPD6B Missense_Mutation p.R184T 0.11 possibly_damaging(0.625) TCGA-67-3771-01 2 155555776 155555776 C A KCNJ3 Silent p.L163L 0.10 TCGA-67-3771-01 2 162876803 162876803 A T DPP4 Missense_Mutation p.C394S 0.07 tolerated(0.35) benign(0.066) TCGA-67-3771-01 2 1639197 1639197 T A PXDN Missense_Mutation p.T1435S 0.60 tolerated(0.15) benign(0.053) TCGA-67-3771-01 2 166211047 166211047 G A SCN2A Missense_Mutation p.E1089K 0.16 deleterious(0.03) benign(0.287) TCGA-67-3771-01 2 166211143 166211143 G A SCN2A Missense_Mutation p.E1121K 0.15 tolerated(0.17) benign(0.393) TCGA-67-3771-01 2 166930006 166930006 T A SCN1A Missense_Mutation p.K42N 0.51 tolerated(0.17) benign(0.001) TCGA-67-3771-01 2 168106754 168106754 G T XIRP2 Missense_Mutation p.R2951L 0.51 probably_damaging(0.97) TCGA-67-3771-01 2 170112651 170112651 T A LRP2 Missense_Mutation p.Q912L 0.48 possibly_damaging(0.821) TCGA-67-3771-01 2 171715359 171715359 A T GAD1 Missense_Mutation p.R523W 0.53 deleterious(0) probably_damaging(0.994) TCGA-67-3771-01 2 175260500 175260500 A T SCRN3 5'UTR 0.50 TCGA-67-3771-01 2 175436880 175436880 G C WIPF1 Missense_Mutation p.T218S 0.10 tolerated(0.34) benign(0.049) TCGA-67-3771-01 2 175614714 175614714 C A CHRNA1 Missense_Mutation p.R346L 0.46 deleterious(0.02) possibly_damaging(0.904) TCGA-67-3771-01 2 179209051 179209051 G A OSBPL6 Silent p.R342R 0.35 TCGA-67-3771-01 2 179396241 179396241 C T TTN Missense_Mutation p.G35034E 0.45 TCGA-67-3771-01 2 179407526 179407526 C A TTN Missense_Mutation p.R32352L 0.14 TCGA-67-3771-01 2 179451993 179451993 G T TTN Silent p.T21315T 0.15 TCGA-67-3771-01 2 179516838 179516838 T A TTN Missense_Mutation p.S13094C 0.19 TCGA-67-3771-01 2 179547466 179547466 G A TTN Missense_Mutation p.R11018W 0.09 TCGA-67-3771-01 2 179575833 179575833 T G TTN Missense_Mutation p.N9377T 0.05 TCGA-67-3771-01 2 179596652 179596652 C A TTN Missense_Mutation p.K5650N 0.24 TCGA-67-3771-01 2 179599169 179599169 A T TTN Missense_Mutation p.S5128T 0.26 TCGA-67-3771-01 2 179612234 179612234 G C TTN Intron 0.12 TCGA-67-3771-01 2 179622626 179622626 C T TTN Missense_Mutation p.E3441K 0.19 TCGA-67-3771-01 2 179640848 179640848 C G TTN Missense_Mutation p.E1915Q 0.14 TCGA-67-3771-01 2 179641721 179641721 C A TTN Missense_Mutation p.D1624Y 0.42 TCGA-67-3771-01 2 18112823 18112823 C A KCNS3 Missense_Mutation p.S183Y 0.27 deleterious(0.03) possibly_damaging(0.51) TCGA-67-3771-01 2 185801543 185801543 G C ZNF804A Missense_Mutation p.D474H 0.54 deleterious(0.02) possibly_damaging(0.522) TCGA-67-3771-01 2 187455063 187455063 G A ITGAV 5'UTR 0.15 TCGA-67-3771-01 2 189839268 189839268 C A COL3A1 Missense_Mutation p.P18H 0.14 unknown(0) TCGA-67-3771-01 2 189866142 189866142 G T COL3A1 Missense_Mutation p.G768V 0.06 unknown(0) TCGA-67-3771-01 2 196664137 196664137 T A DNAH7 Silent p.P3412P 0.11 TCGA-67-3771-01 2 198051794 198051794 C G ANKRD44 Missense_Mutation p.E22Q 0.20 deleterious(0.05) possibly_damaging(0.697) TCGA-67-3771-01 2 198400314 198400314 G A HSPE1-MOB4 Missense_Mutation p.E98K 0.51 tolerated(0.28) benign(0.049) TCGA-67-3771-01 2 198953721 198953721 C T PLCL1 Missense_Mutation p.P952L 0.43 deleterious(0.03) probably_damaging(0.996) TCGA-67-3771-01 2 201994633 201994633 A C CFLAR Silent p.T15T 0.07 TCGA-67-3771-01 2 202207129 202207129 C A ALS2CR12 Missense_Mutation p.C163F 0.57 deleterious(0.03) probably_damaging(0.953) TCGA-67-3771-01 2 202633663 202633663 C G ALS2 5'UTR 0.46 TCGA-67-3771-01 2 203653590 203653590 G A ICA1L Silent p.L402L 0.18 TCGA-67-3771-01 2 20404000 20404000 G A SDC1 Silent p.D67D 0.58 TCGA-67-3771-01 2 204322288 204322288 C G RAPH1 Missense_Mutation p.E375Q 0.05 possibly_damaging(0.764) TCGA-67-3771-01 2 206607987 206607987 C T NRP2 Missense_Mutation p.S451F 0.12 deleterious(0) possibly_damaging(0.908) TCGA-67-3771-01 2 209218694 209218694 G T PIKFYVE Missense_Mutation p.V1973F 0.43 deleterious(0) probably_damaging(1) TCGA-67-3771-01 2 21234952 21234952 T C APOB Silent p.A1596A 0.45 TCGA-67-3771-01 2 21235014 21235014 C A APOB Missense_Mutation p.G1576W 0.37 probably_damaging(1) TCGA-67-3771-01 2 215279129 215279129 A G VWC2L Missense_Mutation p.H71R 0.43 tolerated(0.12) probably_damaging(0.923) TCGA-67-3771-01 2 217234937 217234937 C T MARCH4 Missense_Mutation p.C16Y 0.40 deleterious_low_confidence(0) unknown(0) TCGA-67-3771-01 2 218713785 218713785 T A TNS1 Silent p.P360P 0.49 TCGA-67-3771-01 2 219000386 219000386 C A CXCR2 Missense_Mutation p.R288S 0.53 tolerated(0.16) possibly_damaging(0.895) TCGA-67-3771-01 2 219507065 219507065 G A ZNF142 Missense_Mutation p.R1392W 0.51 deleterious(0) possibly_damaging(0.898) TCGA-67-3771-01 2 219619112 219619112 A G TTLL4 Silent p.%3D 0.04 TCGA-67-3771-01 2 219920102 219920102 G A IHH Missense_Mutation p.H355Y 0.48 tolerated(0.17) benign(0.003) TCGA-67-3771-01 2 219942919 219942919 C T NHEJ1 Missense_Mutation p.E200K 0.35 tolerated(0.08) benign(0.364) TCGA-67-3771-01 2 220097894 220097894 G C ANKZF1 Missense_Mutation p.A218P 0.29 deleterious(0) probably_damaging(0.996) TCGA-67-3771-01 2 220397707 220397707 G C ASIC4 Intron 0.48 TCGA-67-3771-01 2 220473349 220473349 G T STK11IP Nonsense_Mutation p.E561* 0.13 TCGA-67-3771-01 2 223084905 223084905 G T PAX3 Missense_Mutation p.P376H 0.11 tolerated_low_confidence(0.29) benign(0.019) TCGA-67-3771-01 2 226273676 226273676 G C NYAP2 Missense_Mutation p.G27A 0.44 tolerated(0.05) possibly_damaging(0.873) TCGA-67-3771-01 2 227661262 227661262 G C IRS1 Missense_Mutation p.D731E 0.04 tolerated(0.44) benign(0.004) TCGA-67-3771-01 2 228497784 228497784 C A C2orf83 Silent p.L6L 0.40 TCGA-67-3771-01 2 230020567 230020567 C G PID1 Silent p.P79P 0.28 TCGA-67-3771-01 2 232894773 232894773 C T DIS3L2 Missense_Mutation p.P117S 0.56 deleterious(0.04) possibly_damaging(0.721) TCGA-67-3771-01 2 235949751 235949751 A G SH3BP4 Missense_Mutation p.N113S 0.19 tolerated_low_confidence(0.16) benign(0.003) TCGA-67-3771-01 2 235962399 235962399 C T SH3BP4 Missense_Mutation p.S944F 0.11 deleterious(0.03) benign(0.372) TCGA-67-3771-01 2 239006934 239006934 G C SCLY Missense_Mutation p.E434Q 0.47 tolerated(0.12) benign(0.352) TCGA-67-3771-01 2 241439489 241439489 C A ANKMY1 Nonsense_Mutation p.E809* 0.45 TCGA-67-3771-01 2 24920559 24920559 A G NCOA1 Missense_Mutation p.R281G 0.33 deleterious(0) probably_damaging(0.927) TCGA-67-3771-01 2 26533740 26533740 C T GPR113 Silent p.L952L 0.38 TCGA-67-3771-01 2 26802219 26802219 G A C2orf70 Silent p.L173L 0.45 TCGA-67-3771-01 2 27481775 27481775 G T SLC30A3 Silent p.L41L 0.56 TCGA-67-3771-01 2 27603003 27603003 G C ZNF513 Missense_Mutation p.D56E 0.15 tolerated(0.49) possibly_damaging(0.571) TCGA-67-3771-01 2 27706212 27706212 C T IFT172 Missense_Mutation p.A172T 0.12 deleterious(0.02) possibly_damaging(0.837) TCGA-67-3771-01 2 27800472 27800472 G C C2orf16 Missense_Mutation p.D345H 0.19 tolerated(0.18) benign(0.031) TCGA-67-3771-01 2 27800886 27800886 G C C2orf16 Missense_Mutation p.D483H 0.15 tolerated(0.16) benign(0.098) TCGA-67-3771-01 2 31595220 31595220 G A XDH Missense_Mutation p.P577L 0.17 deleterious(0) possibly_damaging(0.742) TCGA-67-3771-01 2 33172863 33172863 C T LTBP1 Missense_Mutation p.H158Y 0.44 tolerated(0.25) benign(0.099) TCGA-67-3771-01 2 3685153 3685153 G T COLEC11 Missense_Mutation p.S92I 0.47 tolerated(0.22) benign(0.005) TCGA-67-3771-01 2 3726108 3726108 G A ALLC Nonsense_Mutation p.W45* 0.61 TCGA-67-3771-01 2 37464981 37464981 A G NDUFAF7 Missense_Mutation p.R127G 0.17 deleterious(0) possibly_damaging(0.861) TCGA-67-3771-01 2 38796436 38796436 C A HNRNPLL Nonsense_Mutation p.E414* 0.36 TCGA-67-3771-01 2 39088536 39088536 T G DHX57 Missense_Mutation p.D339A 0.39 tolerated(0.11) benign(0.217) TCGA-67-3771-01 2 39278356 39278356 C T SOS1 Missense_Mutation p.D265N 0.14 deleterious(0) probably_damaging(0.971) TCGA-67-3771-01 2 42511835 42511835 G C EML4 Missense_Mutation p.D335H 0.19 deleterious(0) possibly_damaging(0.882) TCGA-67-3771-01 2 44503035 44503035 G T SLC3A1 Missense_Mutation p.G121W 0.41 deleterious(0) probably_damaging(0.957) TCGA-67-3771-01 2 51255156 51255157 CG - NRXN1 Frame_Shift_Del p.G86Rfs*13 0.55 TCGA-67-3771-01 2 60688050 60688050 G C BCL11A Missense_Mutation p.S666C 0.36 deleterious(0) possibly_damaging(0.7) TCGA-67-3771-01 2 669766 669766 C G TMEM18 Missense_Mutation p.M106I 0.36 tolerated(0.57) benign(0.006) TCGA-67-3771-01 2 7001425 7001425 G C CMPK2 Missense_Mutation p.I294M 0.16 tolerated(0.06) possibly_damaging(0.854) TCGA-67-3771-01 2 71039605 71039605 C A CLEC4F Missense_Mutation p.A505S 0.53 deleterious(0.01) probably_damaging(0.948) TCGA-67-3771-01 2 73993667 73993667 G A DUSP11 Silent p.L271L 0.13 TCGA-67-3771-01 2 74682559 74682559 G T INO80B Missense_Mutation p.G29C 0.19 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-67-3771-01 2 75107651 75107651 G A HK2 Missense_Mutation p.V509I 0.26 tolerated(0.18) benign(0.014) TCGA-67-3771-01 2 88482504 88482504 C T THNSL2 Missense_Mutation p.S330F 0.25 deleterious(0.05) possibly_damaging(0.865) TCGA-67-3771-01 2 8888088 8888088 C G KIDINS220 Missense_Mutation p.G1153R 0.44 deleterious(0.05) unknown(0) TCGA-67-3771-01 2 89035252 89035252 C G RPIA Missense_Mutation p.F198L 0.34 tolerated(0.06) benign(0.022) TCGA-67-3771-01 2 89265822 89265822 C G IGKV1-6 Missense_Mutation p.D104H 0.18 deleterious(0) probably_damaging(0.986) TCGA-67-3771-01 2 95756262 95756262 C A MRPS5 Missense_Mutation p.G313C 0.23 deleterious(0) probably_damaging(1) TCGA-67-3771-01 2 96780506 96780506 C A ADRA2B 3'UTR 0.61 TCGA-67-3771-01 2 97368993 97368993 C T LMAN2L 3'Flank 0.27 TCGA-67-3771-01 2 99985017 99985017 G C EIF5B Missense_Mutation p.K450N 0.16 probably_damaging(0.966) TCGA-67-3771-01 3 100084239 100084239 A C TOMM70A 3'UTR 0.42 TCGA-67-3771-01 3 101056447 101056447 C T SENP7 Missense_Mutation p.E796K 0.10 tolerated(0.08) possibly_damaging(0.646) TCGA-67-3771-01 3 108778673 108778673 C T MORC1 Silent p.K337K 0.38 TCGA-67-3771-01 3 10967706 10967706 T C SLC6A11 Silent p.F379F 0.23 TCGA-67-3771-01 3 111603514 111603514 G A PHLDB2 Missense_Mutation p.G197E 0.13 deleterious(0) probably_damaging(1) TCGA-67-3771-01 3 113798781 113798781 G A QTRTD1 Missense_Mutation p.E271K 0.12 deleterious(0.04) possibly_damaging(0.591) TCGA-67-3771-01 3 113866313 113866313 C A DRD3 Missense_Mutation p.V159L 0.52 tolerated(0.06) benign(0.002) TCGA-67-3771-01 3 113890706 113890706 A T DRD3 Missense_Mutation p.F45Y 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-67-3771-01 3 120352002 120352002 C A HGD Missense_Mutation p.G394C 0.17 deleterious(0) possibly_damaging(0.725) TCGA-67-3771-01 3 121417151 121417151 T C GOLGB1 Missense_Mutation p.N740S 0.24 benign(0.001) TCGA-67-3771-01 3 122630855 122630855 G C SEMA5B Missense_Mutation p.S1040R 0.29 tolerated(0.33) possibly_damaging(0.568) TCGA-67-3771-01 3 124103792 124103792 T A KALRN Missense_Mutation p.L622Q 0.27 deleterious(0) unknown(0) TCGA-67-3771-01 3 124398361 124398361 G A KALRN Missense_Mutation p.M761I 0.17 tolerated(0.29) benign(0.134) TCGA-67-3771-01 3 124431933 124431933 C T KALRN Missense_Mutation p.L1046F 0.21 deleterious(0) possibly_damaging(0.752) TCGA-67-3771-01 3 125286264 125286264 G C OSBPL11 Nonsense_Mutation p.S281* 0.18 TCGA-67-3771-01 3 12558159 12558159 A T TSEN2 Missense_Mutation p.K320M 0.11 deleterious(0) possibly_damaging(0.841) TCGA-67-3771-01 3 12623348 12623349 - C MKRN2 Frame_Shift_Ins p.F339Ifs*20 0.23 TCGA-67-3771-01 3 126737303 126737303 G T PLXNA1 Missense_Mutation p.R1276L 0.16 tolerated(0.53) probably_damaging(0.998) TCGA-67-3771-01 3 126746796 126746796 A G PLXNA1 Missense_Mutation p.E1459G 0.17 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 3 128060645 128060645 C T EEFSEC Silent p.H452H 0.35 TCGA-67-3771-01 3 129290609 129290609 C A PLXND1 Missense_Mutation p.E1052D 0.10 tolerated(0.1) benign(0.123) TCGA-67-3771-01 3 129290610 129290610 T C PLXND1 Missense_Mutation p.E1052G 0.10 tolerated(0.25) probably_damaging(0.928) TCGA-67-3771-01 3 134851748 134851748 G T EPHB1 Missense_Mutation p.G385V 0.08 deleterious(0) probably_damaging(0.98) TCGA-67-3771-01 3 137880881 137880881 C - DBR1 Frame_Shift_Del p.T496Lfs*10 0.17 TCGA-67-3771-01 3 142388273 142388273 G T PLS1 Missense_Mutation p.D38Y 0.15 deleterious(0) probably_damaging(0.977) TCGA-67-3771-01 3 150881826 150881826 G T MED12L Missense_Mutation p.Q418H 0.05 deleterious(0.02) probably_damaging(0.998) TCGA-67-3771-01 3 150906262 150906262 C T MED12L Missense_Mutation p.S583F 0.14 deleterious(0.02) possibly_damaging(0.837) TCGA-67-3771-01 3 15495391 15495391 C T COLQ Missense_Mutation p.E415K 0.25 deleterious(0) unknown(0) TCGA-67-3771-01 3 155215184 155215184 T A PLCH1 Missense_Mutation p.M595L 0.20 deleterious(0) benign(0.18) TCGA-67-3771-01 3 155571195 155571195 C G SLC33A1 Missense_Mutation p.D198H 0.17 deleterious(0) probably_damaging(1) TCGA-67-3771-01 3 155615825 155615825 A G GMPS Missense_Mutation p.M107V 0.19 deleterious(0.02) possibly_damaging(0.883) TCGA-67-3771-01 3 157820536 157820536 G T SHOX2 Silent p.T186T 0.51 TCGA-67-3771-01 3 160474243 160474243 G C PPM1L Silent p.V49V 0.15 TCGA-67-3771-01 3 169579498 169579498 C G LRRC31 Missense_Mutation p.L93F 0.11 deleterious(0.02) probably_damaging(0.994) TCGA-67-3771-01 3 17053070 17053070 A T PLCL2 Silent p.T618T 0.17 TCGA-67-3771-01 3 171395480 171395480 G A PLD1 Silent p.T624T 0.10 TCGA-67-3771-01 3 173998896 173998896 C T NLGN1 Missense_Mutation p.P759S 0.45 tolerated_low_confidence(0.27) probably_damaging(0.994) TCGA-67-3771-01 3 176769466 176769466 C G TBL1XR1 Missense_Mutation p.D85H 0.11 deleterious(0.02) possibly_damaging(0.806) TCGA-67-3771-01 3 184039092 184039092 C T EIF4G1 Silent p.I247I 0.13 TCGA-67-3771-01 3 184044714 184044714 C G EIF4G1 Nonsense_Mutation p.S1131* 0.05 TCGA-67-3771-01 3 184102332 184102332 G C CHRD Missense_Mutation p.G483A 0.54 deleterious(0.01) probably_damaging(1) TCGA-67-3771-01 3 184801039 184801039 G C C3orf70 Nonsense_Mutation p.S170* 0.30 TCGA-67-3771-01 3 187088747 187088747 T C RTP4 Silent p.D109D 0.17 TCGA-67-3771-01 3 187447552 187447552 C A BCL6 Missense_Mutation p.R214L 0.17 tolerated(0.16) possibly_damaging(0.796) TCGA-67-3771-01 3 192516994 192516994 G A MB21D2 Silent p.I219I 0.07 TCGA-67-3771-01 3 193364866 193364866 A G OPA1 Silent p.L571L 0.62 TCGA-67-3771-01 3 194080147 194080147 G T LRRC15 Silent p.A548A 0.58 TCGA-67-3771-01 3 196675122 196675122 G A PIGZ Missense_Mutation p.L216F 0.12 deleterious(0.01) probably_damaging(0.985) TCGA-67-3771-01 3 32031984 32031984 T A ZNF860 Silent p.I471I 0.21 TCGA-67-3771-01 3 35778819 35778819 C A ARPP21 Missense_Mutation p.P503T 0.20 deleterious(0.05) benign(0.007) TCGA-67-3771-01 3 38770045 38770045 T C SCN10A Silent p.L876L 0.10 TCGA-67-3771-01 3 39161449 39161449 G T TTC21A Nonsense_Mutation p.E288* 0.22 TCGA-67-3771-01 3 41266113 41266113 C G CTNNB1 Missense_Mutation p.S37C 0.24 deleterious(0) probably_damaging(0.986) TCGA-67-3771-01 3 42680905 42680905 G T NKTR Missense_Mutation p.A1237S 0.17 tolerated_low_confidence(0.3) benign(0.208) TCGA-67-3771-01 3 43345163 43345166 GACA - SNRK Frame_Shift_Del p.D158Lfs*38 0.09 TCGA-67-3771-01 3 46401302 46401302 C A CCR2 Nonsense_Mutation p.S359* 0.11 TCGA-67-3771-01 3 46620584 46620584 G C TDGF1 Splice_Site p.X12_splice 0.23 TCGA-67-3771-01 3 48508518 48508518 G C TREX1 Missense_Mutation p.S210T 0.14 tolerated(0.32) possibly_damaging(0.465) TCGA-67-3771-01 3 49720763 49720763 C G APEH Missense_Mutation p.H729Q 0.17 deleterious(0) probably_damaging(0.985) TCGA-67-3771-01 3 49897671 49897671 G C CAMKV Missense_Mutation p.S292C 0.26 tolerated(0.18) probably_damaging(0.997) TCGA-67-3771-01 3 50230588 50230588 C T GNAT1 Silent p.S43S 0.11 TCGA-67-3771-01 3 51392312 51392312 G A DOCK3 Splice_Site p.X1370_splice 0.22 TCGA-67-3771-01 3 51663464 51663464 T C RAD54L2 Silent p.P152P 0.18 TCGA-67-3771-01 3 52257047 52257047 C A TLR9 Nonsense_Mutation p.G583* 0.25 TCGA-67-3771-01 3 52324415 52324415 C G GLYCTK Silent p.L19L 0.24 TCGA-67-3771-01 3 52429689 52429689 G T DNAH1 Missense_Mutation p.D3752Y 0.29 probably_damaging(0.96) TCGA-67-3771-01 3 53908248 53908248 T C ACTR8 Missense_Mutation p.H352R 0.14 deleterious(0) probably_damaging(0.953) TCGA-67-3771-01 3 58116633 58116633 G C FLNB Missense_Mutation p.R1463P 0.33 tolerated(0.07) possibly_damaging(0.72) TCGA-67-3771-01 3 73024327 73024327 C T GXYLT2 3'UTR 0.22 TCGA-67-3771-01 3 78988050 78988050 G - ROBO1 Frame_Shift_Del p.P67Hfs*11 0.12 TCGA-67-3771-01 3 86996125 86996125 G T VGLL3 3'UTR 0.54 TCGA-67-3771-01 3 87302615 87302615 T C CHMP2B Silent p.I162I 0.14 TCGA-67-3771-01 3 89528582 89528582 C G EPHA3 Missense_Mutation p.P961R 0.12 deleterious(0) possibly_damaging(0.675) TCGA-67-3771-01 3 9100069 9100069 C - SRGAP3 Frame_Shift_Del p.E297Kfs*75 0.26 TCGA-67-3771-01 3 93646105 93646105 C A PROS1 Missense_Mutation p.D75Y 0.12 deleterious(0.05) benign(0.078) TCGA-67-3771-01 3 96706570 96706570 C G EPHA6 Missense_Mutation p.Q283E 0.49 deleterious(0) probably_damaging(0.99) TCGA-67-3771-01 4 101111162 101111162 C G DDIT4L 5'UTR 0.28 TCGA-67-3771-01 4 104067129 104067129 G C CENPE Missense_Mutation p.L1424V 0.12 benign(0.094) TCGA-67-3771-01 4 108576016 108576016 C A PAPSS1 Silent p.A312A 0.44 TCGA-67-3771-01 4 113436310 113436310 G T NEUROG2 Missense_Mutation p.R108S 0.37 tolerated(0.12) probably_damaging(0.972) TCGA-67-3771-01 4 115769466 115769466 A T NDST4 Silent p.L615L 0.32 TCGA-67-3771-01 4 1165838 1165838 C T SPON2 Missense_Mutation p.A8T 0.21 tolerated_low_confidence(0.39) unknown(0) TCGA-67-3771-01 4 121738051 121738051 G C PRDM5 Missense_Mutation p.L227V 0.22 tolerated(0.52) benign(0.03) TCGA-67-3771-01 4 122063033 122063033 G T TNIP3 Missense_Mutation p.H352N 0.41 deleterious(0.01) possibly_damaging(0.709) TCGA-67-3771-01 4 128651782 128651782 G A SLC25A31 Missense_Mutation p.G28R 0.51 deleterious(0.01) probably_damaging(0.999) TCGA-67-3771-01 4 128843023 128843023 T A MFSD8 Missense_Mutation p.Q365L 0.40 tolerated(0.11) probably_damaging(0.978) TCGA-67-3771-01 4 134072994 134072994 C G PCDH10 Missense_Mutation p.Q567E 0.42 deleterious(0.02) probably_damaging(0.966) TCGA-67-3771-01 4 141302217 141302217 A G SCOC Missense_Mutation p.S147G 0.40 deleterious(0) probably_damaging(0.987) TCGA-67-3771-01 4 142143645 142143645 G T ZNF330 Missense_Mutation p.M40I 0.30 tolerated(0.06) possibly_damaging(0.487) TCGA-67-3771-01 4 143181690 143181690 G A INPP4B Missense_Mutation p.P215S 0.40 tolerated(0.38) benign(0.012) TCGA-67-3771-01 4 148582162 148582162 G T PRMT10 Silent p.I327I 0.14 TCGA-67-3771-01 4 151520208 151520208 A C LRBA Silent p.P1999P 0.24 TCGA-67-3771-01 4 156136166 156136166 G T NPY2R Missense_Mutation p.A359S 0.26 tolerated(0.83) benign(0.001) TCGA-67-3771-01 4 160259585 160259585 C T RAPGEF2 Missense_Mutation p.S592L 0.21 tolerated(0.37) benign(0.004) TCGA-67-3771-01 4 164534557 164534557 A T MARCH1 Intron 0.42 TCGA-67-3771-01 4 175898412 175898412 T G ADAM29 Missense_Mutation p.I579R 0.12 deleterious(0.02) benign(0.149) TCGA-67-3771-01 4 178897030 178897030 C T LINC01098 Missense_Mutation p.S78L 0.25 tolerated_low_confidence(0.07) possibly_damaging(0.514) TCGA-67-3771-01 4 2948195 2948195 C T NOP14 Missense_Mutation p.E527K 0.08 tolerated(0.1) possibly_damaging(0.811) TCGA-67-3771-01 4 3424297 3424297 G T RGS12 Missense_Mutation p.K1011N 0.58 deleterious(0) probably_damaging(0.989) TCGA-67-3771-01 4 39448475 39448475 G A KLB Missense_Mutation p.G710E 0.29 tolerated(0.36) benign(0.027) TCGA-67-3771-01 4 40099000 40099000 C T N4BP2 Missense_Mutation p.R14W 0.32 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 4 40440598 40440598 C G RBM47 Missense_Mutation p.D105H 0.17 deleterious(0.01) probably_damaging(0.989) TCGA-67-3771-01 4 4199621 4199621 C A OTOP1 Missense_Mutation p.G314C 0.42 deleterious(0) probably_damaging(1) TCGA-67-3771-01 4 42024921 42024921 A G SLC30A9 Silent p.V167V 0.12 TCGA-67-3771-01 4 52869406 52869406 C T LRRC66 Missense_Mutation p.D217N 0.47 tolerated(0.31) benign(0.135) TCGA-67-3771-01 4 53308 53308 G T ZNF595 5'UTR 0.07 TCGA-67-3771-01 4 66467425 66467425 A G EPHA5 Missense_Mutation p.W282R 0.39 deleterious(0) probably_damaging(0.986) TCGA-67-3771-01 4 70070363 70070363 A G UGT2B11 Silent p.H365H 0.20 TCGA-67-3771-01 4 7056721 7056721 A C TADA2B Silent p.L401L 0.24 TCGA-67-3771-01 4 71398274 71398274 C A AMTN 3'UTR 0.75 TCGA-67-3771-01 4 73962875 73962875 A C ANKRD17 Silent p.R1712R 0.42 TCGA-67-3771-01 4 76912084 76912084 C G SDAD1 5'UTR 0.25 TCGA-67-3771-01 4 77134780 77134780 G A SCARB2 5'UTR 0.50 TCGA-67-3771-01 4 84339310 84339310 T C HELQ Missense_Mutation p.K1000R 0.49 tolerated(0.15) benign(0.068) TCGA-67-3771-01 4 9784051 9784051 T A DRD5 Missense_Mutation p.V133D 0.29 deleterious(0) probably_damaging(0.981) TCGA-67-3771-01 4 99273625 99273625 A T RAP1GDS1 Splice_Site p.X80_splice 0.43 TCGA-67-3771-01 5 10288575 10288575 G A CMBL Silent p.F94F 0.29 TCGA-67-3771-01 5 108714382 108714382 T A PJA2 Missense_Mutation p.Q269L 0.22 tolerated(0.21) benign(0.013) TCGA-67-3771-01 5 11082809 11082809 G T CTNND2 Silent p.I929I 0.20 TCGA-67-3771-01 5 111519791 111519791 C A EPB41L4A Missense_Mutation p.W515L 0.23 tolerated(0.06) probably_damaging(0.948) TCGA-67-3771-01 5 112406907 112406907 T C MCC Silent p.Q603Q 0.21 TCGA-67-3771-01 5 114879140 114879140 C A FEM1C Silent p.R17R 0.20 TCGA-67-3771-01 5 115298888 115298888 C A AQPEP Missense_Mutation p.L192I 0.24 deleterious(0) probably_damaging(1) TCGA-67-3771-01 5 127728854 127728854 C A FBN2 Missense_Mutation p.G480V 0.17 tolerated(0.09) possibly_damaging(0.55) TCGA-67-3771-01 5 132437501 132437501 A - HSPA4 Frame_Shift_Del p.K697Nfs*6 0.22 TCGA-67-3771-01 5 135651315 135651315 G T TRPC7 Silent p.I311I 0.24 TCGA-67-3771-01 5 139909060 139909060 G T ANKHD1 Missense_Mutation p.V2177L 0.20 benign(0.063) TCGA-67-3771-01 5 140174546 140174546 G T PCDHA2 5'Flank 0.24 TCGA-67-3771-01 5 140176995 140176995 A T PCDHA2 Intron 0.38 TCGA-67-3771-01 5 140189081 140189081 T C PCDHA4 Missense_Mutation p.M770T 0.24 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-67-3771-01 5 140308879 140308879 G A PCDHAC1 Missense_Mutation p.R801K 0.23 tolerated(0.86) benign(0.002) TCGA-67-3771-01 5 140501728 140501728 G C PCDHB4 Missense_Mutation p.D50H 0.12 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-67-3771-01 5 140515957 140515957 A C PCDHB5 Missense_Mutation p.Y314S 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.821) TCGA-67-3771-01 5 140516601 140516601 C T PCDHB5 Missense_Mutation p.R529C 0.25 deleterious_low_confidence(0.02) benign(0.293) TCGA-67-3771-01 5 140530479 140530479 T A PCDHB6 Missense_Mutation p.L214Q 0.29 tolerated(0.06) benign(0.068) TCGA-67-3771-01 5 140558439 140558439 A G PCDHB8 Missense_Mutation p.N275S 0.25 tolerated_low_confidence(0.27) benign(0.257) TCGA-67-3771-01 5 140559471 140559471 G T PCDHB8 Missense_Mutation p.W619L 0.20 deleterious_low_confidence(0.01) benign(0.135) TCGA-67-3771-01 5 140683365 140683365 C T SLC25A2 Missense_Mutation p.C23Y 0.13 tolerated(0.1) probably_damaging(0.986) TCGA-67-3771-01 5 140683366 140683366 A T SLC25A2 Missense_Mutation p.C23S 0.15 tolerated(0.27) probably_damaging(0.993) TCGA-67-3771-01 5 140751805 140751805 G T PCDHGB3 Missense_Mutation p.G615V 0.13 deleterious(0) probably_damaging(0.998) TCGA-67-3771-01 5 140788971 140788971 A T PCDHGB6 Missense_Mutation p.Y401F 0.31 tolerated(0.09) benign(0.139) TCGA-67-3771-01 5 140789165 140789165 C G PCDHGB6 Missense_Mutation p.P466A 0.18 tolerated(0.07) benign(0.191) TCGA-67-3771-01 5 140811320 140811320 A G PCDHGA12 Missense_Mutation p.K332E 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.88) TCGA-67-3771-01 5 140864842 140864842 G T PCDHGC4 Silent p.P34P 0.19 TCGA-67-3771-01 5 141233739 141233739 G C PCDH1 Missense_Mutation p.F1194L 0.25 tolerated(0.1) benign(0.199) TCGA-67-3771-01 5 141318258 141318258 C T KIAA0141 Silent p.S494S 0.09 TCGA-67-3771-01 5 145537160 145537160 C A LARS Missense_Mutation p.A291S 0.22 deleterious(0.02) possibly_damaging(0.887) TCGA-67-3771-01 5 145537167 145537167 G A LARS Silent p.F288F 0.21 TCGA-67-3771-01 5 149001437 149001437 A T ARHGEF37 Missense_Mutation p.S383C 0.30 deleterious(0) probably_damaging(0.964) TCGA-67-3771-01 5 149274852 149274852 G T PDE6A Missense_Mutation p.A541D 0.17 deleterious(0) benign(0.147) TCGA-67-3771-01 5 149433914 149433914 C A CSF1R Nonsense_Mutation p.E912* 0.24 TCGA-67-3771-01 5 149749093 149749093 G A TCOF1 Silent p.G189G 0.29 TCGA-67-3771-01 5 150276098 150276098 G A ZNF300 Missense_Mutation p.H251Y 0.21 tolerated(0.11) possibly_damaging(0.466) TCGA-67-3771-01 5 150701583 150701583 C A SLC36A2 Intron 0.21 TCGA-67-3771-01 5 150924904 150924904 C A FAT2 Silent p.L1928L 0.21 TCGA-67-3771-01 5 151170615 151170615 G T G3BP1 Missense_Mutation p.A115S 0.20 deleterious(0.01) possibly_damaging(0.663) TCGA-67-3771-01 5 153796519 153796519 T G GALNT10 Missense_Mutation p.F600C 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-67-3771-01 5 153796538 153796538 C T GALNT10 3'UTR 0.23 TCGA-67-3771-01 5 156482498 156482498 A G HAVCR1 Silent p.S31S 0.17 TCGA-67-3771-01 5 157158442 157158442 G A THG1L 5'UTR 0.28 TCGA-67-3771-01 5 158634916 158634916 C A RNF145 Intron 0.22 TCGA-67-3771-01 5 15928326 15928326 G T FBXL7 Missense_Mutation p.R152L 0.33 tolerated(0.32) probably_damaging(0.993) TCGA-67-3771-01 5 15936692 15936692 C T FBXL7 Silent p.H291H 0.12 TCGA-67-3771-01 5 169267790 169267790 C G DOCK2 Missense_Mutation p.I911M 0.09 deleterious(0.01) benign(0.317) TCGA-67-3771-01 5 172659655 172659655 C A NKX2-5 Missense_Mutation p.G298W 0.20 deleterious(0) probably_damaging(0.989) TCGA-67-3771-01 5 175111256 175111256 G C HRH2 Silent p.L340L 0.08 TCGA-67-3771-01 5 176025235 176025235 T A GPRIN1 Missense_Mutation p.K534M 0.34 tolerated(0.1) benign(0.049) TCGA-67-3771-01 5 176084058 176084058 G T TSPAN17 Intron 0.50 TCGA-67-3771-01 5 178040602 178040602 C G CLK4 Missense_Mutation p.G233A 0.21 deleterious(0) probably_damaging(0.972) TCGA-67-3771-01 5 178358866 178358866 A G ZFP2 Silent p.K184K 0.12 TCGA-67-3771-01 5 178506897 178506897 G C ZNF354C Missense_Mutation p.R488S 0.22 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 5 179044535 179044535 G C HNRNPH1 Nonsense_Mutation p.S346* 0.07 TCGA-67-3771-01 5 180166157 180166157 C A OR2Y1 Missense_Mutation p.W301L 0.17 deleterious(0.05) benign(0.006) TCGA-67-3771-01 5 180581966 180581966 C A OR2V2 Silent p.S8S 0.28 TCGA-67-3771-01 5 180582444 180582444 C T OR2V2 Missense_Mutation p.P168S 0.16 tolerated(0.23) possibly_damaging(0.513) TCGA-67-3771-01 5 180582654 180582654 G T OR2V2 Missense_Mutation p.A238S 0.18 deleterious(0.02) possibly_damaging(0.732) TCGA-67-3771-01 5 21760782 21760782 T C CDH12 Missense_Mutation p.I506M 0.29 deleterious(0.01) benign(0.032) TCGA-67-3771-01 5 24593464 24593464 C A CDH10 Missense_Mutation p.G46C 0.21 deleterious(0.01) possibly_damaging(0.829) TCGA-67-3771-01 5 2748737 2748737 G C IRX2 Nonsense_Mutation p.S362* 0.25 TCGA-67-3771-01 5 33527444 33527444 G A ADAMTS12 Missense_Mutation p.S1545L 0.21 deleterious(0) possibly_damaging(0.662) TCGA-67-3771-01 5 33947350 33947350 C T SLC45A2 Missense_Mutation p.S429N 0.20 deleterious(0.01) benign(0.367) TCGA-67-3771-01 5 35654779 35654779 G C SPEF2 Missense_Mutation p.R310T 0.14 deleterious(0.02) probably_damaging(0.994) TCGA-67-3771-01 5 35776497 35776497 G T SPEF2 Missense_Mutation p.S1406I 0.19 deleterious(0) probably_damaging(0.994) TCGA-67-3771-01 5 41149361 41149361 C A C6 Missense_Mutation p.D869Y 0.16 deleterious(0) probably_damaging(0.956) TCGA-67-3771-01 5 41199909 41199909 C A C6 Nonsense_Mutation p.E136* 0.26 TCGA-67-3771-01 5 41381966 41381966 T G PLCXD3 Missense_Mutation p.K258N 0.10 tolerated(0.05) possibly_damaging(0.601) TCGA-67-3771-01 5 44811251 44811251 G T MRPS30 Missense_Mutation p.A248S 0.14 tolerated(0.08) benign(0.016) TCGA-67-3771-01 5 5303476 5303476 C T ADAMTS16 Missense_Mutation p.S962L 0.36 tolerated(0.27) benign(0.004) TCGA-67-3771-01 5 54456044 54456044 G A GPX8 Silent p.P8P 0.24 TCGA-67-3771-01 5 54603803 54603803 C G SKIV2L2 5'UTR 0.14 TCGA-67-3771-01 5 54960619 54960619 G A SLC38A9 Missense_Mutation p.S200L 0.11 tolerated(0.43) benign(0.223) TCGA-67-3771-01 5 55407437 55407437 C A ANKRD55 Missense_Mutation p.D380Y 0.16 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-67-3771-01 5 64910024 64910024 C T TRIM23 Silent p.L89L 0.08 TCGA-67-3771-01 5 70806253 70806253 G A BDP1 Missense_Mutation p.G1112S 0.22 tolerated(0.66) benign(0.005) TCGA-67-3771-01 5 78340326 78340326 G A DMGDH Silent p.L265L 0.28 TCGA-67-3771-01 5 78422045 78422045 C A BHMT Missense_Mutation p.P268T 0.21 deleterious(0.01) probably_damaging(0.984) TCGA-67-3771-01 5 79616095 79616095 C G SPZ1 Missense_Mutation p.P21A 0.19 tolerated(0.12) benign(0.063) TCGA-67-3771-01 5 79855043 79855043 C T ANKRD34B Missense_Mutation p.E266K 0.12 deleterious(0.03) probably_damaging(0.914) TCGA-67-3771-01 5 79950244 79950244 T - DHFR Frame_Shift_Del p.D22Afs*17 0.22 TCGA-67-3771-01 5 92956752 92956757 TGGTCT - FAM172A In_Frame_Del p.K396_T397del 0.12 TCGA-67-3771-01 6 108502082 108502082 G T NR2E1 Missense_Mutation p.V271L 0.44 tolerated(0.09) benign(0.001) TCGA-67-3771-01 6 110098260 110098260 G A FIG4 Missense_Mutation p.R629K 0.32 tolerated(0.33) benign(0.004) TCGA-67-3771-01 6 11185641 11185641 T A NEDD9 Silent p.A753A 0.50 TCGA-67-3771-01 6 116949479 116949479 C T RSPH4A Silent p.L537L 0.20 TCGA-67-3771-01 6 124676442 124676442 G T NKAIN2 Silent p.T74T 0.44 TCGA-67-3771-01 6 127796797 127796797 G A SOGA3 Missense_Mutation p.L792F 0.54 tolerated(0.2) possibly_damaging(0.714) TCGA-67-3771-01 6 129649547 129649547 C T LAMA2 Missense_Mutation p.S1434L 0.47 deleterious(0) possibly_damaging(0.869) TCGA-67-3771-01 6 130762590 130762590 C A TMEM200A Silent p.V341V 0.11 TCGA-67-3771-01 6 130762655 130762655 T C TMEM200A Missense_Mutation p.M363T 0.19 tolerated(0.65) benign(0.002) TCGA-67-3771-01 6 136512860 136512860 A T PDE7B Missense_Mutation p.Q412L 0.33 tolerated(0.39) benign(0.028) TCGA-67-3771-01 6 14131775 14131775 A T CD83 Missense_Mutation p.M60L 0.51 tolerated(1) benign(0.001) TCGA-67-3771-01 6 146256096 146256096 C A SHPRH Missense_Mutation p.Q979H 0.47 deleterious(0) probably_damaging(1) TCGA-67-3771-01 6 148846478 148846478 G T SASH1 Missense_Mutation p.G421C 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-67-3771-01 6 151789697 151789697 G T C6orf211 Missense_Mutation p.V260F 0.53 tolerated(0.48) benign(0.009) TCGA-67-3771-01 6 155500537 155500537 C A TIAM2 Missense_Mutation p.P885Q 0.39 tolerated(0.16) benign(0.141) TCGA-67-3771-01 6 160510217 160510217 G T IGF2R Missense_Mutation p.Q2133H 0.41 tolerated(0.11) benign(0.022) TCGA-67-3771-01 6 16143378 16143378 C T MYLIP Nonsense_Mutation p.Q198* 0.10 TCGA-67-3771-01 6 169632775 169632775 G T THBS2 Missense_Mutation p.A639D 0.45 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 6 1930451 1930451 A T GMDS Silent p.V219V 0.61 TCGA-67-3771-01 6 26273408 26273408 G A HIST1H2BI Missense_Mutation p.D69N 0.18 deleterious_low_confidence(0.05) benign(0.209) TCGA-67-3771-01 6 26545530 26545530 A G HMGN4 Silent p.P32P 0.43 TCGA-67-3771-01 6 27420806 27420806 G A ZNF184 Missense_Mutation p.P178S 0.45 tolerated(0.4) benign(0.022) TCGA-67-3771-01 6 27777984 27777984 G A HIST1H3H Missense_Mutation p.G45S 0.06 deleterious_low_confidence(0) benign(0.265) TCGA-67-3771-01 6 28056879 28056879 G A ZNF165 Silent p.Q363Q 0.18 TCGA-67-3771-01 6 28963357 28963357 C T ZNF311 Silent p.E474E 0.43 TCGA-67-3771-01 6 29644964 29644964 C T ZFP57 5'Flank 0.38 TCGA-67-3771-01 6 31901508 31901508 G A C2 Silent p.E188E 0.51 TCGA-67-3771-01 6 31927146 31927146 T A SKIV2L Missense_Mutation p.L32Q 0.49 deleterious(0) possibly_damaging(0.85) TCGA-67-3771-01 6 32008524 32008524 G T CYP21A2 Nonsense_Mutation p.E400* 0.16 TCGA-67-3771-01 6 32017941 32017941 C A TNXB 5'Flank 0.36 TCGA-67-3771-01 6 32037579 32037579 C T TNXB Missense_Mutation p.E1780K 0.29 probably_damaging(0.986) TCGA-67-3771-01 6 32805830 32805830 A C TAP2 Missense_Mutation p.F61V 0.16 tolerated(0.53) unknown(0) TCGA-67-3771-01 6 33272866 33272866 G A TAPBP Silent p.F256F 0.16 TCGA-67-3771-01 6 34263448 34263448 C G NUDT3 Silent p.G75G 0.21 TCGA-67-3771-01 6 348851 348851 A T DUSP22 Intron 0.09 TCGA-67-3771-01 6 35927260 35927260 C T SLC26A8 Missense_Mutation p.D614N 0.16 deleterious(0) probably_damaging(0.967) TCGA-67-3771-01 6 36454967 36454967 C T KCTD20 3'UTR 0.14 TCGA-67-3771-01 6 36454985 36454985 C T KCTD20 3'UTR 0.15 TCGA-67-3771-01 6 37298965 37298965 G T TBC1D22B 3'UTR 0.49 TCGA-67-3771-01 6 38670747 38670747 C A GLO1 Missense_Mutation p.K28N 0.45 tolerated(0.24) benign(0.019) TCGA-67-3771-01 6 41010795 41010795 G A TSPO2 Missense_Mutation p.R24H 0.46 tolerated(0.3) benign(0.005) TCGA-67-3771-01 6 42796998 42796998 C T GLTSCR1L Silent p.V309V 0.12 TCGA-67-3771-01 6 44144038 44144038 T A CAPN11 Missense_Mutation p.W322R 0.49 deleterious(0) probably_damaging(0.998) TCGA-67-3771-01 6 47684541 47684541 G T GPR115 Splice_Site p.X645_splice 0.44 TCGA-67-3771-01 6 4892412 4892412 G T CDYL Nonsense_Mutation p.E164* 0.38 TCGA-67-3771-01 6 49754596 49754596 G C PGK2 Missense_Mutation p.A102G 0.52 deleterious(0.02) benign(0.009) TCGA-67-3771-01 6 56401663 56401663 G C DST Missense_Mutation p.Q2939E 0.11 probably_damaging(0.992) TCGA-67-3771-01 6 56483314 56483314 G T DST Intron 0.44 TCGA-67-3771-01 6 656540 656540 C A HUS1B Silent p.R135R 0.63 TCGA-67-3771-01 6 69640530 69640530 A G BAI3 Silent p.Q279Q 0.25 TCGA-67-3771-01 6 69758130 69758130 C G BAI3 Missense_Mutation p.P721A 0.65 deleterious(0.03) possibly_damaging(0.866) TCGA-67-3771-01 6 71004033 71004033 G A COL9A1 Missense_Mutation p.S178F 0.23 unknown(0) TCGA-67-3771-01 6 89638909 89638909 G C RNGTT Missense_Mutation p.I84M 0.24 tolerated(0.11) possibly_damaging(0.476) TCGA-67-3771-01 6 89890150 89890150 G C GABRR1 Missense_Mutation p.P336R 0.41 deleterious(0) probably_damaging(0.99) TCGA-67-3771-01 6 90039433 90039433 G A UBE2J1 Silent p.L308L 0.49 TCGA-67-3771-01 6 90642323 90642323 G T BACH2 Missense_Mutation p.P777H 0.55 tolerated(0.08) benign(0.422) TCGA-67-3771-01 6 94068026 94068026 A C EPHA7 Missense_Mutation p.C312W 0.17 deleterious(0) probably_damaging(0.976) TCGA-67-3771-01 6 96997630 96997630 G T UFL1 Silent p.S591S 0.38 TCGA-67-3771-01 6 96997631 96997631 G T UFL1 Missense_Mutation p.D592Y 0.37 deleterious(0) probably_damaging(0.977) TCGA-67-3771-01 6 99997442 99997442 C T CCNC Silent p.V180V 0.36 TCGA-67-3771-01 7 101671405 101671405 C T CUX1 Silent p.L68L 0.22 TCGA-67-3771-01 7 107816974 107816974 A T NRCAM Missense_Mutation p.L1018I 0.55 tolerated(0.06) probably_damaging(0.991) TCGA-67-3771-01 7 11485703 11485703 T A THSD7A Nonsense_Mutation p.R1017* 0.28 TCGA-67-3771-01 7 121638051 121638051 G T PTPRZ1 Missense_Mutation p.D411Y 0.33 deleterious(0) possibly_damaging(0.526) TCGA-67-3771-01 7 124499043 124499043 C G POT1 Missense_Mutation p.D224H 0.30 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 7 127235724 127235726 GCA - FSCN3 In_Frame_Del p.A171del 0.16 TCGA-67-3771-01 7 129357178 129357178 G T NRF1 Missense_Mutation p.E395D 0.41 tolerated(0.23) benign(0.002) TCGA-67-3771-01 7 142111844 142111845 GG - TRBV5-7 Frame_Shift_Del p.C7Lfs*63 0.36 TCGA-67-3771-01 7 142334739 142334739 C T TRBV20-1 Missense_Mutation p.P54L 0.53 deleterious(0.04) benign(0.147) TCGA-67-3771-01 7 142460350 142460350 T C PRSS1 Missense_Mutation p.Y175H 0.30 deleterious(0.01) probably_damaging(0.995) TCGA-67-3771-01 7 148513776 148513776 C T EZH2 Missense_Mutation p.R502Q 0.50 tolerated(0.07) benign(0.02) TCGA-67-3771-01 7 148767407 148767407 G C ZNF786 3'UTR 0.23 TCGA-67-3771-01 7 148802277 148802277 C T ZNF425 Missense_Mutation p.G229E 0.55 tolerated(0.08) possibly_damaging(0.476) TCGA-67-3771-01 7 150739143 150739143 G T ABCB8 Silent p.A571A 0.23 TCGA-67-3771-01 7 150774063 150774063 C T FASTK Silent p.V493V 0.27 TCGA-67-3771-01 7 150774531 150774531 C T FASTK Intron 0.31 TCGA-67-3771-01 7 151945082 151945082 G C KMT2C Missense_Mutation p.P813A 0.07 probably_damaging(0.999) TCGA-67-3771-01 7 1519959 1519959 G A INTS1 Silent p.F1356F 0.24 TCGA-67-3771-01 7 1523686 1523686 C G INTS1 Missense_Mutation p.V1128L 0.34 tolerated(0.86) benign(0.014) TCGA-67-3771-01 7 19748388 19748388 C G TWISTNB Missense_Mutation p.E84D 0.15 tolerated(0.11) possibly_damaging(0.844) TCGA-67-3771-01 7 21723442 21723442 G A DNAH11 Missense_Mutation p.R1841H 0.09 probably_damaging(0.999) TCGA-67-3771-01 7 21947917 21947917 C T CDCA7L Missense_Mutation p.R171H 0.36 tolerated(0.58) benign(0.001) TCGA-67-3771-01 7 2290724 2290724 G T NUDT1 3'UTR 0.21 TCGA-67-3771-01 7 24911677 24911677 T A OSBPL3 Missense_Mutation p.E36D 0.35 deleterious(0.01) benign(0.044) TCGA-67-3771-01 7 2686509 2686509 C T TTYH3 Missense_Mutation p.A49V 0.30 tolerated(1) benign(0.001) TCGA-67-3771-01 7 27135155 27135155 C A HOXA1 Missense_Mutation p.C126F 0.18 tolerated(0.05) probably_damaging(0.983) TCGA-67-3771-01 7 27169157 27169157 C A HOXA4 Missense_Mutation p.R217L 0.21 deleterious(0) probably_damaging(1) TCGA-67-3771-01 7 28848855 28848855 C T CREB5 Nonsense_Mutation p.Q360* 0.09 TCGA-67-3771-01 7 30649288 30649288 C A GARS Missense_Mutation p.P275T 0.31 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 7 30793439 30793439 C G INMT Missense_Mutation p.L83V 0.27 tolerated(0.92) benign(0.002) TCGA-67-3771-01 7 31011704 31011704 C T GHRHR Silent p.F197F 0.25 TCGA-67-3771-01 7 31378209 31378209 A G NEUROD6 Missense_Mutation p.L225P 0.35 tolerated(0.16) possibly_damaging(0.633) TCGA-67-3771-01 7 31793152 31793152 A T PDE1C Nonsense_Mutation p.L719* 0.25 TCGA-67-3771-01 7 31877577 31877577 C T PDE1C Missense_Mutation p.R390Q 0.25 deleterious(0.01) probably_damaging(0.927) TCGA-67-3771-01 7 32529942 32529942 C A LSM5 Silent p.L12L 0.15 TCGA-67-3771-01 7 34889224 34889224 A T NPSR1 Intron 0.29 TCGA-67-3771-01 7 36194191 36194191 A G EEPD1 Silent p.V86V 0.23 TCGA-67-3771-01 7 36336752 36336752 T C EEPD1 Missense_Mutation p.L489P 0.11 tolerated(0.13) possibly_damaging(0.701) TCGA-67-3771-01 7 38424385 38424385 C A AMPH 3'UTR 0.24 TCGA-67-3771-01 7 40134118 40134118 G C CDK13 Missense_Mutation p.A1360P 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.601) TCGA-67-3771-01 7 4116637 4116637 G C SDK1 Missense_Mutation p.Q1006H 0.19 deleterious(0.01) possibly_damaging(0.516) TCGA-67-3771-01 7 44149840 44149840 C A AEBP1 Missense_Mutation p.A432E 0.21 deleterious(0) probably_damaging(1) TCGA-67-3771-01 7 44184835 44184835 C T GCK Missense_Mutation p.S434N 0.30 tolerated(0.57) benign(0) TCGA-67-3771-01 7 44875224 44875224 G C H2AFV Missense_Mutation p.L77V 0.17 deleterious(0) benign(0.215) TCGA-67-3771-01 7 47343137 47343137 G T TNS3 Silent p.P956P 0.17 TCGA-67-3771-01 7 47882629 47882629 C A PKD1L1 Silent p.L1792L 0.30 TCGA-67-3771-01 7 48046759 48046759 G T SUN3 Intron 0.28 TCGA-67-3771-01 7 49842403 49842403 G T VWC2 Nonsense_Mutation p.E265* 0.27 TCGA-67-3771-01 7 51261234 51261234 G T COBL Missense_Mutation p.P100T 0.35 deleterious(0) probably_damaging(1) TCGA-67-3771-01 7 53103547 53103547 C T POM121L12 Silent p.S61S 0.30 TCGA-67-3771-01 7 53103731 53103731 G T POM121L12 Missense_Mutation p.G123W 0.23 tolerated(0.1) probably_damaging(0.991) TCGA-67-3771-01 7 55259501 55259501 C T EGFR Silent p.I853I 0.08 TCGA-67-3771-01 7 55990964 55990964 G C MRPS17 Missense_Mutation p.R53T 0.33 deleterious_low_confidence(0.04) unknown(0) TCGA-67-3771-01 7 55990965 55990965 G C MRPS17 Missense_Mutation p.R53S 0.31 tolerated_low_confidence(0.59) unknown(0) TCGA-67-3771-01 7 65439604 65439604 G - GUSB Frame_Shift_Del p.H385Tfs*8 0.21 TCGA-67-3771-01 7 72409924 72409924 G A POM121 Missense_Mutation p.D208N 0.30 tolerated(0.07) possibly_damaging(0.515) TCGA-67-3771-01 7 72643792 72643792 C A NCF1B RNA 0.36 TCGA-67-3771-01 7 72734212 72734212 C T TRIM50 Silent p.L143L 0.19 TCGA-67-3771-01 7 74565198 74565198 C G GTF2IRD2B 3'UTR 0.12 TCGA-67-3771-01 7 80546044 80546044 A G SEMA3C Silent p.C18C 0.35 TCGA-67-3771-01 7 84628913 84628913 C G SEMA3D Missense_Mutation p.S726T 0.14 tolerated(0.47) benign(0.098) TCGA-67-3771-01 7 98509822 98509822 G A TRRAP Missense_Mutation p.E729K 0.37 probably_damaging(0.999) TCGA-67-3771-01 7 99308411 99308411 G T CYP3A7 Missense_Mutation p.H324N 0.48 tolerated(0.48) benign(0.344) TCGA-67-3771-01 7 99580996 99580996 C A AZGP1P1 RNA 0.44 TCGA-67-3771-01 7 99662084 99662084 G A ZSCAN21 Silent p.G422G 0.42 TCGA-67-3771-01 8 100514053 100514053 C T VPS13B Missense_Mutation p.L1337F 0.10 tolerated(0.11) probably_damaging(0.986) TCGA-67-3771-01 8 103664486 103664487 TA - KLF10 Frame_Shift_Del p.Y59Rfs*2 0.18 TCGA-67-3771-01 8 104987722 104987722 C T RIMS2 Missense_Mutation p.P972L 0.20 deleterious_low_confidence(0.01) benign(0.159) TCGA-67-3771-01 8 108315484 108315484 A G ANGPT1 Missense_Mutation p.M307T 0.11 tolerated(0.72) benign(0.03) TCGA-67-3771-01 8 110305589 110305589 G C NUDCD1 Missense_Mutation p.I208M 0.06 deleterious(0.05) benign(0.092) TCGA-67-3771-01 8 110457536 110457536 G A PKHD1L1 Missense_Mutation p.S1813N 0.28 tolerated(0.26) benign(0.375) TCGA-67-3771-01 8 110986364 110986364 G T KCNV1 Missense_Mutation p.P85H 0.30 deleterious(0.01) benign(0.005) TCGA-67-3771-01 8 113323366 113323366 G C CSMD3 Missense_Mutation p.P2576A 0.24 tolerated(0.76) possibly_damaging(0.526) TCGA-67-3771-01 8 113697836 113697836 G C CSMD3 Missense_Mutation p.L761V 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-67-3771-01 8 114185958 114185958 G A CSMD3 Silent p.I234I 0.34 TCGA-67-3771-01 8 116426548 116426548 C A TRPS1 Missense_Mutation p.E1196D 0.20 tolerated_low_confidence(0.16) probably_damaging(0.994) TCGA-67-3771-01 8 116599299 116599299 C A TRPS1 Missense_Mutation p.G877W 0.21 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-67-3771-01 8 120577193 120577193 C - ENPP2 Frame_Shift_Del p.V764Sfs*10 0.22 TCGA-67-3771-01 8 121295936 121295936 C G COL14A1 Missense_Mutation p.P1296A 0.17 tolerated(0.05) probably_damaging(0.998) TCGA-67-3771-01 8 124113096 124113096 A C TBC1D31 Missense_Mutation p.Q294P 0.22 tolerated(0.06) benign(0.304) TCGA-67-3771-01 8 131812783 131812783 C T ADCY8 Silent p.V983V 0.16 TCGA-67-3771-01 8 131955633 131955633 G C ADCY8 Silent p.L439L 0.15 TCGA-67-3771-01 8 142190928 142190928 G T DENND3 Silent p.A893A 0.25 TCGA-67-3771-01 8 143784660 143784660 A G LY6K Silent p.L123L 0.13 TCGA-67-3771-01 8 143928027 143928027 C T GML Missense_Mutation p.P133L 0.22 tolerated(0.79) benign(0.015) TCGA-67-3771-01 8 143955876 143955876 T A CYP11B1 Silent p.T475T 0.31 TCGA-67-3771-01 8 143995833 143995833 A G CYP11B2 Silent p.G267G 0.23 TCGA-67-3771-01 8 144124453 144124453 C A C8orf31 Nonsense_Mutation p.S12* 0.24 TCGA-67-3771-01 8 144522323 144522323 C T ZC3H3 Silent p.A901A 0.21 TCGA-67-3771-01 8 144731985 144731985 A G ZNF623 5'UTR 0.19 TCGA-67-3771-01 8 145108219 145108219 C G OPLAH Missense_Mutation p.D922H 0.27 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 8 146157923 146157923 C T ZNF16 Missense_Mutation p.E84K 0.13 tolerated(0.15) benign(0.188) TCGA-67-3771-01 8 15517098 15517098 G C TUSC3 Missense_Mutation p.R170T 0.29 tolerated(0.13) benign(0.155) TCGA-67-3771-01 8 24359024 24359024 G T ADAM7 Nonsense_Mutation p.G715* 0.29 TCGA-67-3771-01 8 30704584 30704584 C T TEX15 Silent p.T650T 0.32 TCGA-67-3771-01 8 3265561 3265561 C - CSMD1 Frame_Shift_Del p.G644Afs*5 0.27 TCGA-67-3771-01 8 35541202 35541202 C A UNC5D Silent p.I236I 0.45 TCGA-67-3771-01 8 36675196 36675196 G T KCNU1 Missense_Mutation p.V342L 0.43 tolerated(1) benign(0.06) TCGA-67-3771-01 8 37821747 37821747 C T ADRB3 Missense_Mutation p.G406R 0.23 deleterious_low_confidence(0) possibly_damaging(0.669) TCGA-67-3771-01 8 41834584 41834584 C T KAT6A Silent p.E435E 0.37 TCGA-67-3771-01 8 42176906 42176906 G T IKBKB Nonsense_Mutation p.E495* 0.39 TCGA-67-3771-01 8 42259420 42259420 C T VDAC3 Silent p.F147F 0.13 TCGA-67-3771-01 8 51363276 51363276 G T SNTG1 Missense_Mutation p.R117I 0.31 tolerated(0.06) benign(0.266) TCGA-67-3771-01 8 54708348 54708348 C T ATP6V1H Missense_Mutation p.M243I 0.12 tolerated(0.26) benign(0.018) TCGA-67-3771-01 8 56675566 56675566 T C TMEM68 5'UTR 0.50 TCGA-67-3771-01 8 57218183 57218183 A C SDR16C5 Missense_Mutation p.L270W 0.37 tolerated(0.09) benign(0.198) TCGA-67-3771-01 8 63930053 63930053 T C GGH Silent p.E278E 0.20 TCGA-67-3771-01 8 66631465 66631465 G T PDE7A 3'UTR 0.15 TCGA-67-3771-01 8 68658425 68658425 C G CPA6 5'UTR 0.19 TCGA-67-3771-01 8 72123457 72123457 C A EYA1 Missense_Mutation p.R544S 0.37 deleterious(0.02) probably_damaging(0.992) TCGA-67-3771-01 8 73480521 73480521 G C KCNB2 Missense_Mutation p.E184D 0.12 deleterious(0.02) benign(0.408) TCGA-67-3771-01 8 77617456 77617456 G T ZFHX4 Missense_Mutation p.G378V 0.23 probably_damaging(0.979) TCGA-67-3771-01 8 77620118 77620118 C A ZFHX4 Missense_Mutation p.H976Q 0.33 benign(0.402) TCGA-67-3771-01 8 77768223 77768223 C T ZFHX4 Silent p.I3022I 0.32 TCGA-67-3771-01 8 89131063 89131063 T A MMP16 Missense_Mutation p.H246L 0.33 deleterious(0) probably_damaging(0.994) TCGA-67-3771-01 8 89339533 89339533 G T MMP16 5'UTR 0.50 TCGA-67-3771-01 9 104171922 104171922 G T ZNF189 Missense_Mutation p.W624C 0.19 deleterious_low_confidence(0.02) probably_damaging(0.977) TCGA-67-3771-01 9 104335781 104335781 G A GRIN3A Missense_Mutation p.P1008L 0.25 tolerated(0.13) benign(0.111) TCGA-67-3771-01 9 1056458 1056458 C A DMRT2 Missense_Mutation p.P291T 0.21 tolerated(0.06) benign(0.218) TCGA-67-3771-01 9 107298654 107298654 C A OR13C3 Missense_Mutation p.M147I 0.39 tolerated(0.11) benign(0.064) TCGA-67-3771-01 9 117187363 117187364 - A DFNB31 Intron 0.33 TCGA-67-3771-01 9 117228579 117228579 G A DFNB31 Missense_Mutation p.P311S 0.40 deleterious(0.04) benign(0.127) TCGA-67-3771-01 9 125084970 125084970 C T MRRF 3'UTR 0.57 TCGA-67-3771-01 9 125315507 125315507 G C OR1N2 Missense_Mutation p.R20T 0.19 tolerated(0.07) benign(0.023) TCGA-67-3771-01 9 125486593 125486593 G A OR1L4 Missense_Mutation p.G109R 0.43 deleterious(0) possibly_damaging(0.628) TCGA-67-3771-01 9 127651448 127651448 C A GOLGA1 Nonsense_Mutation p.E579* 0.44 TCGA-67-3771-01 9 137688241 137688241 C T COL5A1 Missense_Mutation p.P941S 0.38 unknown(0) TCGA-67-3771-01 9 140508500 140508500 C G ARRDC1 Missense_Mutation p.S151C 0.24 deleterious(0.04) benign(0.021) TCGA-67-3771-01 9 19785946 19785946 C T SLC24A2 Missense_Mutation p.A307T 0.25 tolerated(0.57) benign(0.001) TCGA-67-3771-01 9 21971203 21971203 A C CDKN2A Missense_Mutation p.M52R 0.48 deleterious(0) probably_damaging(0.976) TCGA-67-3771-01 9 23762245 23762245 C A ELAVL2 Intron 0.34 TCGA-67-3771-01 9 286583 286583 G C DOCK8 Silent p.V93V 0.42 TCGA-67-3771-01 9 35370326 35370326 G T UNC13B Missense_Mutation p.G409V 0.31 deleterious(0.01) possibly_damaging(0.792) TCGA-67-3771-01 9 35606843 35606843 G - TESK1 Frame_Shift_Del p.T136Hfs*47 0.15 TCGA-67-3771-01 9 35719611 35719611 C T TLN1 Nonsense_Mutation p.W531* 0.18 TCGA-67-3771-01 9 35732765 35732765 C G CREB3 5'UTR 0.16 TCGA-67-3771-01 9 37486630 37486630 C T POLR1E Intron 0.26 TCGA-67-3771-01 9 5743005 5743005 A C KIAA1432 Silent p.G346G 0.19 TCGA-67-3771-01 9 73213554 73213554 C T TRPM3 Silent p.Q931Q 0.17 TCGA-67-3771-01 9 77300554 77300554 T A RORB 3'UTR 0.49 TCGA-67-3771-01 9 77300565 77300565 G A RORB 3'UTR 0.50 TCGA-67-3771-01 9 84530475 84530475 C T SPATA31D5P RNA 0.48 TCGA-67-3771-01 9 85863297 85863297 C T FRMD3 Missense_Mutation p.E444K 0.32 tolerated(0.12) probably_damaging(0.99) TCGA-67-3771-01 9 86902971 86902971 C A SLC28A3 Missense_Mutation p.M424I 0.44 tolerated(0.22) benign(0.097) TCGA-67-3771-01 9 90535364 90535364 C G SPATA31C1 RNA 0.38 TCGA-67-3771-01 9 98242849 98242849 C G PTCH1 Missense_Mutation p.W256C 0.26 deleterious(0) probably_damaging(1) TCGA-67-3771-01 9 99227767 99227767 G T HABP4 Missense_Mutation p.G221W 0.33 deleterious(0) probably_damaging(0.995) TCGA-67-3771-01 9 99581246 99581246 G - ZNF782 Frame_Shift_Del p.F353Lfs*9 0.17 TCGA-67-3771-01 X 101623790 101623790 T C NXF2B Splice_Site p.X192_splice 0.11 TCGA-67-3771-01 X 101818873 101818873 G A NXF4 RNA 0.22 TCGA-67-3771-01 X 103349497 103349497 T G SLC25A53 Missense_Mutation p.Q148H 0.24 tolerated(0.36) possibly_damaging(0.827) TCGA-67-3771-01 X 106084040 106084040 G A TBC1D8B Missense_Mutation p.D549N 0.38 deleterious(0) probably_damaging(0.988) TCGA-67-3771-01 X 107554022 107554022 C A COL4A6 Missense_Mutation p.D35Y 0.18 unknown(0) TCGA-67-3771-01 X 107554023 107554023 C A COL4A6 Missense_Mutation p.Q34H 0.17 unknown(0) TCGA-67-3771-01 X 107977860 107977861 - A IRS4 Frame_Shift_Ins p.G572Vfs*32 0.15 TCGA-67-3771-01 X 113965884 113965884 C A HTR2C Missense_Mutation p.L73I 0.25 deleterious(0) probably_damaging(1) TCGA-67-3771-01 X 123556156 123556156 G A TENM1 Silent p.D1479D 0.26 TCGA-67-3771-01 X 125298590 125298590 C A DCAF12L2 Nonsense_Mutation p.E440* 0.27 TCGA-67-3771-01 X 135288688 135288688 G C FHL1 Missense_Mutation p.D33H 0.31 deleterious(0) probably_damaging(0.954) TCGA-67-3771-01 X 135431523 135431523 C T GPR112 Silent p.P1886P 0.30 TCGA-67-3771-01 X 136649681 136649681 G A ZIC3 Silent p.E277E 0.22 TCGA-67-3771-01 X 13753126 13753126 G C OFD1 5'UTR 0.38 TCGA-67-3771-01 X 140995104 140995104 C A MAGEC1 Silent p.S638S 0.27 TCGA-67-3771-01 X 142716437 142716437 C G SLITRK4 Missense_Mutation p.E830Q 0.19 deleterious(0.01) probably_damaging(0.979) TCGA-67-3771-01 X 142716438 142716438 C A SLITRK4 Missense_Mutation p.E829D 0.18 deleterious(0) benign(0.237) TCGA-67-3771-01 X 146318520 146318520 A G MIR508 RNA 0.25 TCGA-67-3771-01 X 147106529 147106529 C A FMR1NB 3'UTR 0.29 TCGA-67-3771-01 X 148797297 148797297 A T MAGEA11 Missense_Mutation p.S76C 0.36 deleterious(0.04) possibly_damaging(0.869) TCGA-67-3771-01 X 149999767 149999767 C A CD99L2 Splice_Site p.X23_splice 0.33 TCGA-67-3771-01 X 1508207 1508207 C G SLC25A6 Missense_Mutation p.Q175H 0.22 deleterious(0) benign(0.325) TCGA-67-3771-01 X 1508329 1508329 C G SLC25A6 Missense_Mutation p.D135H 0.19 deleterious(0) probably_damaging(0.999) TCGA-67-3771-01 X 150912332 150912332 C A CNGA2 Missense_Mutation p.R453S 0.26 tolerated(0.08) possibly_damaging(0.565) TCGA-67-3771-01 X 15268584 15268584 T C ASB9 Missense_Mutation p.Q179R 0.26 tolerated(0.43) benign(0.07) TCGA-67-3771-01 X 154133184 154133184 C T F8 Missense_Mutation p.E1830K 0.36 deleterious(0.05) probably_damaging(0.997) TCGA-67-3771-01 X 155171561 155171561 C T VAMP7 Missense_Mutation p.H181Y 0.15 tolerated(0.12) benign(0.291) TCGA-67-3771-01 X 2209550 2209550 G A DHRSX Silent p.I127I 0.23 TCGA-67-3771-01 X 26212971 26212971 G T MAGEB6 Missense_Mutation p.L336F 0.24 deleterious(0.02) probably_damaging(0.951) TCGA-67-3771-01 X 27997645 27997645 G C DCAF8L1 3'UTR 0.26 TCGA-67-3771-01 X 27997961 27997962 CG - DCAF8L1 Frame_Shift_Del p.A497Dfs*16 0.21 TCGA-67-3771-01 X 31089993 31089993 C T FTHL17 Silent p.T26T 0.27 TCGA-67-3771-01 X 36007664 36007664 A G CXorf22 3'UTR 0.27 TCGA-67-3771-01 X 44703735 44703735 G A DUSP21 Silent p.A119A 0.25 TCGA-67-3771-01 X 48758546 48758546 A C PQBP1 Silent p.P49P 0.36 TCGA-67-3771-01 X 52842250 52842250 G T XAGE5 Missense_Mutation p.Q53H 0.23 deleterious(0.02) benign(0.177) TCGA-67-3771-01 X 53105740 53105740 C A GPR173 5'UTR 0.20 TCGA-67-3771-01 X 71800926 71800926 T C PHKA1 Missense_Mutation p.M1200V 0.28 deleterious(0) probably_damaging(0.998) TCGA-67-3771-01 X 75003878 75003878 G T MAGEE2 Missense_Mutation p.L337I 0.20 tolerated(1) probably_damaging(0.992) TCGA-67-3771-01 X 86772825 86772825 A T KLHL4 5'UTR 0.24 TCGA-67-3771-01 X 86868907 86868907 G C KLHL4 Missense_Mutation p.M150I 0.36 tolerated(0.06) benign(0.248) TCGA-67-3771-01 X 86921526 86921526 C A KLHL4 Intron 0.24 TCGA-67-3771-01 X 96220166 96220166 C T DIAPH2 Silent p.L670L 0.27 TCGA-67-3773-01 10 62544479 62544479 G C CDK1 Silent p.V18V 0.34 TCGA-67-3773-01 11 102667829 102667829 G T MMP1 Missense_Mutation p.Q139K 0.38 tolerated(1) benign(0.02) TCGA-67-3773-01 11 114113048 114113048 G T ZBTB16 Missense_Mutation p.R538L 0.23 deleterious(0.03) probably_damaging(0.989) TCGA-67-3773-01 11 119217000 119217000 C T MFRP Missense_Mutation p.V47I 0.25 tolerated(0.33) benign(0) TCGA-67-3773-01 11 120989078 120989078 G T TECTA Missense_Mutation p.C285F 0.41 deleterious(0) probably_damaging(0.999) TCGA-67-3773-01 11 4967760 4967760 A T OR51A4 Missense_Mutation p.C191S 0.21 deleterious(0.01) probably_damaging(0.941) TCGA-67-3773-01 11 5068314 5068314 G A OR52J3 Missense_Mutation p.A187T 0.22 deleterious(0) probably_damaging(0.955) TCGA-67-3773-01 11 5730700 5730700 C T TRIM22 Missense_Mutation p.P440L 0.33 tolerated(0.13) possibly_damaging(0.666) TCGA-67-3773-01 11 57569381 57569381 G T CTNND1 Missense_Mutation p.R378L 0.25 tolerated(0.07) probably_damaging(0.965) TCGA-67-3773-01 11 57958720 57958720 G A OR9Q2 Missense_Mutation p.G253D 0.35 deleterious(0) probably_damaging(0.973) TCGA-67-3773-01 11 58711127 58711127 C A GLYATL1 Missense_Mutation p.L46M 0.37 deleterious(0) possibly_damaging(0.693) TCGA-67-3773-01 11 6588836 6588836 G A DNHD1 Missense_Mutation p.E4033K 0.36 benign(0.053) TCGA-67-3773-01 11 71946219 71946219 C T INPPL1 Silent p.V825V 0.36 TCGA-67-3773-01 11 82917155 82917155 G T ANKRD42 Missense_Mutation p.G65V 0.30 deleterious(0.01) probably_damaging(0.965) TCGA-67-3773-01 12 10584778 10584778 A G KLRC2 Missense_Mutation p.S171P 0.29 deleterious(0.03) benign(0.062) TCGA-67-3773-01 12 13229033 13229033 T A KIAA1467 Missense_Mutation p.L533H 0.37 deleterious(0) probably_damaging(0.997) TCGA-67-3773-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.23 deleterious(0) possibly_damaging(0.479) TCGA-67-3773-01 12 2797654 2797654 C A CACNA1C Missense_Mutation p.S1990R 0.28 tolerated_low_confidence(0.6) possibly_damaging(0.863) TCGA-67-3773-01 12 55794443 55794443 T A OR6C65 Missense_Mutation p.I44N 0.30 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-67-3773-01 12 69218332 69218332 T G MDM2 Intron 0.22 TCGA-67-3773-01 12 78542638 78542638 G T NAV3 Missense_Mutation p.R1575L 0.29 deleterious(0) probably_damaging(0.999) TCGA-67-3773-01 12 83251161 83251161 G T TMTC2 Missense_Mutation p.L152F 0.32 tolerated(0.59) benign(0.267) TCGA-67-3773-01 13 24860373 24860373 G T SPATA13 Missense_Mutation p.V775F 0.40 deleterious(0) probably_damaging(0.994) TCGA-67-3773-01 13 52534313 52534313 T C ATP7B Missense_Mutation p.I698V 0.25 tolerated(0.35) benign(0.002) TCGA-67-3773-01 14 75182766 75182766 T G FCF1 Missense_Mutation p.L86V 0.63 tolerated(0.21) benign(0.011) TCGA-67-3773-01 15 23889920 23889920 G - MAGEL2 Frame_Shift_Del p.V388* 0.22 TCGA-67-3773-01 15 28600154 28600154 T A RP11-483E23.2 Splice_Site 0.14 TCGA-67-3773-01 15 72037537 72037537 G A THSD4 Missense_Mutation p.E667K 0.32 tolerated(0.15) benign(0.258) TCGA-67-3773-01 15 93489385 93489389 ATTGC - CHD2 Frame_Shift_Del p.C440* 0.45 TCGA-67-3773-01 16 28877650 28877650 G A SH2B1 Missense_Mutation p.E79K 0.09 deleterious(0) probably_damaging(0.998) TCGA-67-3773-01 16 28996766 28996766 G A LAT Missense_Mutation p.V46M 0.27 tolerated_low_confidence(0.06) possibly_damaging(0.791) TCGA-67-3773-01 16 29996668 29996668 G T TAOK2 Missense_Mutation p.E519D 0.39 deleterious(0.05) possibly_damaging(0.666) TCGA-67-3773-01 16 613967 613967 C G C16orf11 Missense_Mutation p.P225A 0.17 deleterious(0.01) probably_damaging(0.965) TCGA-67-3773-01 16 66586481 66586481 C A CKLF 5'UTR 0.32 TCGA-67-3773-01 16 74526922 74526922 G A GLG1 Silent p.N389N 0.09 TCGA-67-3773-01 16 86565744 86565744 C T MTHFSD Missense_Mutation p.R342Q 0.31 tolerated(1) benign(0.004) TCGA-67-3773-01 17 16470691 16470691 C T ZNF287 Missense_Mutation p.E119K 0.53 deleterious(0) benign(0.183) TCGA-67-3773-01 17 38066035 38066035 G A GSDMB Nonsense_Mutation p.Q184* 0.30 TCGA-67-3773-01 17 51902309 51902309 G T KIF2B Missense_Mutation p.A639S 0.28 tolerated(0.13) benign(0.437) TCGA-67-3773-01 18 31323885 31323885 T C ASXL3 Missense_Mutation p.V1358A 0.32 benign(0.174) TCGA-67-3773-01 18 31523045 31523045 C A NOL4 Missense_Mutation p.R509L 0.35 deleterious(0.02) probably_damaging(0.998) TCGA-67-3773-01 18 42532619 42532619 G T SETBP1 Missense_Mutation p.G1105V 0.29 tolerated(0.25) benign(0.248) TCGA-67-3773-01 18 59157904 59157904 C A CDH20 Missense_Mutation p.Q40K 0.11 tolerated(0.95) benign(0.001) TCGA-67-3773-01 18 7926632 7926632 A G PTPRM Missense_Mutation p.Q205R 0.34 deleterious(0) benign(0.021) TCGA-67-3773-01 19 14758015 14758015 G A EMR3 Missense_Mutation p.T287M 0.03 tolerated(0.06) benign(0.051) TCGA-67-3773-01 19 15758117 15758117 A T CYP4F3 Missense_Mutation p.S170C 0.33 tolerated(0.17) benign(0.181) TCGA-67-3773-01 19 15789113 15789113 T A CYP4F12 Missense_Mutation p.S81T 0.27 tolerated(0.15) benign(0.012) TCGA-67-3773-01 19 21991490 21991490 C A ZNF43 Missense_Mutation p.G450V 0.36 deleterious(0.01) probably_damaging(0.99) TCGA-67-3773-01 19 21991491 21991491 C A ZNF43 Nonsense_Mutation p.G450* 0.36 TCGA-67-3773-01 19 39879075 39879075 C A PAF1 Missense_Mutation p.W297L 0.31 deleterious(0) probably_damaging(0.997) TCGA-67-3773-01 19 4216959 4216959 C A ANKRD24 Missense_Mutation p.P601H 0.44 tolerated_low_confidence(0.12) benign(0.048) TCGA-67-3773-01 19 4327149 4327149 C A STAP2 Silent p.L245L 0.22 TCGA-67-3773-01 19 54598413 54598413 G T OSCAR 3'UTR 0.35 TCGA-67-3773-01 19 55144063 55144063 C T LILRB1 Silent p.G270G 0.34 TCGA-67-3773-01 19 58551855 58551855 G T ZSCAN1 Missense_Mutation p.W136C 0.32 tolerated(0.18) benign(0.352) TCGA-67-3773-01 1 113217566 113217566 G T MOV10 Missense_Mutation p.R11L 0.34 tolerated(0.11) benign(0.19) TCGA-67-3773-01 1 118554977 118554977 C A SPAG17 Missense_Mutation p.D1436Y 0.27 deleterious(0) probably_damaging(1) TCGA-67-3773-01 1 120336725 120336725 T G REG4 3'UTR 0.36 TCGA-67-3773-01 1 152128367 152128367 T A RPTN Missense_Mutation p.Y403F 0.32 deleterious(0.01) benign(0.297) TCGA-67-3773-01 1 158627290 158627290 C T SPTA1 Missense_Mutation p.G928S 0.32 deleterious(0) probably_damaging(1) TCGA-67-3773-01 1 160061677 160061677 A T IGSF8 Missense_Mutation p.V593D 0.31 deleterious(0) benign(0.425) TCGA-67-3773-01 1 176857323 176857323 G T ASTN1 Silent p.T986T 0.29 TCGA-67-3773-01 1 209878375 209878375 G T HSD11B1 Nonsense_Mutation p.E30* 0.25 TCGA-67-3773-01 1 209878376 209878376 G T HSD11B1 Splice_Site p.X30_splice 0.25 TCGA-67-3773-01 1 216074227 216074227 G A USH2A Missense_Mutation p.P2441S 0.33 probably_damaging(0.999) TCGA-67-3773-01 1 248367162 248367162 G - OR2M3 Frame_Shift_Del p.D265Ifs*21 0.34 TCGA-67-3773-01 1 35369906 35369906 G A DLGAP3 Missense_Mutation p.A360V 0.32 tolerated(0.39) benign(0.396) TCGA-67-3773-01 1 75038095 75038095 G T C1orf173 Missense_Mutation p.A1100E 0.29 tolerated(0.55) benign(0.006) TCGA-67-3773-01 1 99772407 99772407 C A LPPR4 Missense_Mutation p.S711R 0.29 tolerated(0.08) possibly_damaging(0.458) TCGA-67-3773-01 21 34883584 34883584 A G GART Silent p.I763I 0.29 TCGA-67-3773-01 21 46697007 46697007 C A POFUT2 Missense_Mutation p.E252D 0.28 tolerated(0.41) benign(0.008) TCGA-67-3773-01 22 16449040 16449040 G - OR11H1 Frame_Shift_Del p.C256Vfs*20 0.21 TCGA-67-3773-01 22 21991045 21991045 C T CCDC116 Nonsense_Mutation p.Q510* 0.38 TCGA-67-3773-01 22 39218644 39218644 G A NPTXR Silent p.F491F 0.27 TCGA-67-3773-01 22 45075718 45075718 C T PRR5 Silent p.G13G 0.46 TCGA-67-3773-01 2 128391816 128391816 G A MYO7B Silent p.Q1833Q 0.35 TCGA-67-3773-01 2 175437101 175437101 T A WIPF1 Silent p.P144P 0.28 TCGA-67-3773-01 2 234835266 234835266 G A TRPM8 Silent p.A28A 0.30 TCGA-67-3773-01 2 239355230 239355230 G A ASB1 3'UTR 0.37 TCGA-67-3773-01 2 33572578 33572578 G A LTBP1 Splice_Site p.X1334_splice 0.35 TCGA-67-3773-01 2 33952372 33952372 G A AC009499.1 Intron 0.33 TCGA-67-3773-01 2 44429147 44429147 A G PPM1B Missense_Mutation p.N270S 0.28 tolerated(0.57) benign(0.002) TCGA-67-3773-01 2 95847911 95847911 G T ZNF2 3'UTR 0.32 TCGA-67-3773-01 3 113955934 113955934 G A ZNF80 5'UTR 0.30 TCGA-67-3773-01 3 179519752 179519752 G C PEX5L Missense_Mutation p.P582R 0.29 tolerated(0.23) benign(0.147) TCGA-67-3773-01 3 23934429 23934429 T A NKIRAS1 3'UTR 0.21 TCGA-67-3773-01 3 42956891 42956891 G T ZNF662 3'UTR 0.43 TCGA-67-3773-01 3 65479199 65479199 C A MAGI1 Missense_Mutation p.G180C 0.30 deleterious(0) probably_damaging(1) TCGA-67-3773-01 3 96963011 96963011 G T EPHA6 Missense_Mutation p.V496L 0.31 tolerated(0.1) benign(0.297) TCGA-67-3773-01 4 113554386 113554386 C A C4orf21 5'UTR 0.31 TCGA-67-3773-01 4 46736906 46736906 G A COX7B2 3'UTR 0.27 TCGA-67-3773-01 4 55955043 55955043 C T KDR Missense_Mutation p.A1168T 0.27 deleterious(0.02) possibly_damaging(0.881) TCGA-67-3773-01 4 83351928 83351928 G T ENOPH1 5'UTR 0.16 TCGA-67-3773-01 5 115782618 115782618 G T SEMA6A Missense_Mutation p.S928R 0.31 tolerated(0.62) benign(0.197) TCGA-67-3773-01 5 121488874 121488874 A T ZNF474 3'UTR 0.30 TCGA-67-3773-01 5 121759333 121759333 C A SNCAIP Missense_Mutation p.L301I 0.32 tolerated(0.26) benign(0.016) TCGA-67-3773-01 5 140221181 140221181 G A PCDHA8 Missense_Mutation p.R92H 0.22 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-67-3773-01 5 140256557 140256557 C A PCDHA12 Silent p.G500G 0.35 TCGA-67-3773-01 5 167933091 167933091 A G RARS Missense_Mutation p.I375V 0.28 tolerated(0.9) benign(0.029) TCGA-67-3773-01 5 75936794 75936794 G T IQGAP2 Nonsense_Mutation p.E654* 0.20 TCGA-67-3773-01 5 82815769 82815769 T C VCAN Silent p.Y548Y 0.31 TCGA-67-3773-01 5 94818288 94818288 T C TTC37 Silent p.R1367R 0.50 TCGA-67-3773-01 5 95224622 95224622 T C ELL2 Missense_Mutation p.R626G 0.09 deleterious(0) benign(0.263) TCGA-67-3773-01 6 44119729 44119729 G T TMEM63B Missense_Mutation p.R607M 0.54 deleterious(0.01) probably_damaging(0.999) TCGA-67-3773-01 6 52268034 52268034 G A PAQR8 Missense_Mutation p.R8H 0.14 tolerated(0.05) benign(0.001) TCGA-67-3773-01 6 75841736 75841736 G A COL12A1 Missense_Mutation p.R1953C 0.17 possibly_damaging(0.667) TCGA-67-3773-01 6 83775392 83775392 C A UBE3D Nonsense_Mutation p.G16* 0.47 TCGA-67-3773-01 7 103162494 103162494 G A RELN Missense_Mutation p.S2548L 0.29 deleterious(0.01) probably_damaging(0.988) TCGA-67-3773-01 7 132193285 132193285 C A PLXNA4 Silent p.V56V 0.29 TCGA-67-3773-01 7 133812255 133812255 C T LRGUK Silent p.P45P 0.32 TCGA-67-3773-01 7 154875952 154875952 G A HTR5A Missense_Mutation p.E277K 0.42 tolerated(0.1) probably_damaging(0.95) TCGA-67-3773-01 7 27222458 27222458 T A HOXA11 Missense_Mutation p.N300I 0.23 deleterious(0) probably_damaging(0.973) TCGA-67-3773-01 7 27222459 27222459 T G HOXA11 Missense_Mutation p.N300H 0.23 deleterious(0) probably_damaging(0.973) TCGA-67-3773-01 7 30821598 30821598 G T FAM188B Missense_Mutation p.K63N 0.30 deleterious(0) probably_damaging(0.917) TCGA-67-3773-01 8 10467287 10467287 G T RP1L1 Missense_Mutation p.P1441T 0.34 unknown(0) TCGA-67-3773-01 8 131792870 131792870 G A ADCY8 Silent p.V1174V 0.31 TCGA-67-3773-01 8 21853061 21853061 G T XPO7 Missense_Mutation p.A766S 0.32 tolerated(0.59) benign(0.058) TCGA-67-3773-01 8 2944626 2944626 G T CSMD1 Silent p.L2489L 0.45 TCGA-67-3773-01 8 51617263 51617263 G T SNTG1 Missense_Mutation p.W381L 0.23 deleterious(0.05) possibly_damaging(0.728) TCGA-67-3773-01 8 51617264 51617264 G T SNTG1 Missense_Mutation p.W381C 0.23 deleterious(0) probably_damaging(0.996) TCGA-67-3773-01 8 95272446 95272446 C A GEM Missense_Mutation p.A96S 0.31 deleterious(0.03) probably_damaging(0.944) TCGA-67-3773-01 8 99102146 99102146 C T C8orf47 Missense_Mutation p.P301S 0.35 tolerated(0.07) benign(0) TCGA-67-3773-01 9 134360401 134360401 G T PRRC2B Missense_Mutation p.A1878S 0.25 tolerated(0.6) benign(0.051) TCGA-67-3773-01 9 5522564 5522564 A C PDCD1LG2 Silent p.L6L 0.04 TCGA-67-3773-01 9 8528763 8528763 C A PTPRD Missense_Mutation p.R123S 0.20 tolerated(0.67) benign(0.032) TCGA-67-3773-01 X 114242517 114242517 C A IL13RA2 Missense_Mutation p.W325C 0.50 deleterious(0) probably_damaging(1) TCGA-67-3773-01 X 120182373 120182373 G T GLUD2 Missense_Mutation p.G279W 0.50 deleterious(0) probably_damaging(0.993) TCGA-67-3773-01 X 120182374 120182374 G T GLUD2 Missense_Mutation p.G279V 0.50 deleterious(0) probably_damaging(0.912) TCGA-67-3773-01 X 2825192 2825192 C T ARSD 3'UTR 0.56 TCGA-67-3774-01 10 105833976 105833976 G A COL17A1 Silent p.G115G 0.17 TCGA-67-3774-01 10 26570005 26570005 G C GAD2 Missense_Mutation p.V409L 0.18 tolerated(0.41) probably_damaging(0.979) TCGA-67-3774-01 11 117098010 117098010 G C PCSK7 Missense_Mutation p.S211C 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-67-3774-01 11 124632059 124632059 C T ESAM 5'UTR 0.10 TCGA-67-3774-01 11 133789732 133789732 G A IGSF9B Silent p.D1296D 0.19 TCGA-67-3774-01 11 45671907 45671907 G T CHST1 Missense_Mutation p.N189K 0.16 deleterious(0) probably_damaging(1) TCGA-67-3774-01 11 55563901 55563901 G T OR5D14 Silent p.L290L 0.24 TCGA-67-3774-01 11 62293403 62293403 T A AHNAK Missense_Mutation p.H2829L 0.28 benign(0.067) TCGA-67-3774-01 11 64879032 64879032 G A VPS51 Silent p.V774V 0.27 TCGA-67-3774-01 11 64882511 64882511 C A TM7SF2 Missense_Mutation p.P284T 0.08 tolerated(0.36) benign(0.009) TCGA-67-3774-01 11 64882512 64882512 C A TM7SF2 Missense_Mutation p.P284H 0.08 tolerated(0.31) benign(0.009) TCGA-67-3774-01 11 64882533 64882533 C T TM7SF2 Missense_Mutation p.S291F 0.19 tolerated(0.65) benign(0.278) TCGA-67-3774-01 11 65375459 65375459 C T MAP3K11 Missense_Mutation p.A335T 0.21 deleterious(0) probably_damaging(0.994) TCGA-67-3774-01 11 76371718 76371718 C T LRRC32 Missense_Mutation p.G307R 0.28 tolerated(0.69) benign(0.001) TCGA-67-3774-01 11 76825355 76825355 G A CAPN5 Missense_Mutation p.G192S 0.24 deleterious(0.01) probably_damaging(1) TCGA-67-3774-01 11 76826513 76826513 G A CAPN5 Missense_Mutation p.D258N 0.25 tolerated(0.22) probably_damaging(0.933) TCGA-67-3774-01 11 76826613 76826613 G A CAPN5 Nonsense_Mutation p.W291* 0.19 TCGA-67-3774-01 11 76826625 76826625 G A CAPN5 Nonsense_Mutation p.W295* 0.14 TCGA-67-3774-01 11 76829344 76829344 G C CAPN5 Missense_Mutation p.Q371H 0.20 tolerated(0.57) benign(0.005) TCGA-67-3774-01 11 76830106 76830106 G A CAPN5 Missense_Mutation p.E400K 0.31 tolerated(0.44) probably_damaging(0.923) TCGA-67-3774-01 11 92918921 92918921 C A SLC36A4 Nonsense_Mutation p.E39* 0.31 TCGA-67-3774-01 12 110570411 110570411 A G IFT81 Missense_Mutation p.I163M 0.37 deleterious(0.02) benign(0.013) TCGA-67-3774-01 12 116421330 116421330 G C MED13L Missense_Mutation p.T1516S 0.20 tolerated(0.85) unknown(0) TCGA-67-3774-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.32 deleterious(0) possibly_damaging(0.479) TCGA-67-3774-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.32 deleterious(0.04) probably_damaging(0.993) TCGA-67-3774-01 12 9303303 9303303 G T PZP Missense_Mutation p.Q1441K 0.19 deleterious(0) benign(0.151) TCGA-67-3774-01 13 101712232 101712232 C T NALCN Missense_Mutation p.E1615K 0.19 tolerated(0.52) benign(0.006) TCGA-67-3774-01 13 108922448 108922448 G C TNFSF13B Missense_Mutation p.V69L 0.29 tolerated(0.29) benign(0.004) TCGA-67-3774-01 13 110827061 110827061 A T COL4A1 Silent p.P1078P 0.23 TCGA-67-3774-01 13 53418997 53418997 C A PCDH8 Missense_Mutation p.G971W 0.16 deleterious(0.02) probably_damaging(0.996) TCGA-67-3774-01 14 20404500 20404500 C A OR4K1 Silent p.V225V 0.16 TCGA-67-3774-01 14 23547389 23547389 C G ACIN1 Silent p.L756L 0.27 TCGA-67-3774-01 14 50044477 50044477 G A RPS29 3'UTR 0.48 TCGA-67-3774-01 14 93170567 93170567 C A LGMN 3'UTR 0.37 TCGA-67-3774-01 15 44891010 44891010 G C SPG11 Silent p.A1237A 0.25 TCGA-67-3774-01 16 22587979 22587979 T A RP11-368J21.3 RNA 0.09 TCGA-67-3774-01 16 347719 347719 C A AXIN1 Intron 0.20 TCGA-67-3774-01 17 18906919 18906919 G A FAM83G Missense_Mutation p.R146W 0.25 deleterious(0) probably_damaging(1) TCGA-67-3774-01 17 21731313 21731313 G C UBBP4 Intron 0.28 TCGA-67-3774-01 17 27076615 27076615 G A TRAF4 3'UTR 0.19 TCGA-67-3774-01 17 46608145 46608145 C A HOXB1 Missense_Mutation p.S41I 0.23 deleterious(0.05) possibly_damaging(0.748) TCGA-67-3774-01 17 46608146 46608146 T A HOXB1 Missense_Mutation p.S41C 0.23 deleterious(0) possibly_damaging(0.855) TCGA-67-3774-01 17 60637432 60637432 A T TLK2 Missense_Mutation p.Y259F 0.11 tolerated(0.19) benign(0.011) TCGA-67-3774-01 17 66880001 66880001 A G ABCA8 Missense_Mutation p.F1173S 0.25 deleterious(0) probably_damaging(0.984) TCGA-67-3774-01 17 73328799 73328799 A C GRB2 Missense_Mutation p.I53R 0.16 deleterious(0.02) possibly_damaging(0.902) TCGA-67-3774-01 17 80037127 80037127 G A FASN Silent p.V2476V 0.20 TCGA-67-3774-01 18 28908187 28908187 A T DSG1 Silent p.T84T 0.16 TCGA-67-3774-01 18 31323436 31323436 T A ASXL3 Silent p.P1208P 0.16 TCGA-67-3774-01 18 60985890 60985890 C G BCL2 Missense_Mutation p.A4P 0.17 tolerated(0.47) benign(0.017) TCGA-67-3774-01 19 1220371 1220371 G T STK11 Splice_Site p.X155_splice 0.32 TCGA-67-3774-01 19 21991282 21991282 A G ZNF43 Silent p.F519F 0.32 TCGA-67-3774-01 19 30935217 30935217 G T ZNF536 Missense_Mutation p.D250Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-67-3774-01 19 31039011 31039011 G T ZNF536 Missense_Mutation p.A829S 0.20 tolerated(0.52) benign(0.002) TCGA-67-3774-01 19 37383369 37383369 C A ZNF829 Silent p.L189L 0.11 TCGA-67-3774-01 19 39330766 39330766 A G AC104534.3 Silent p.N18N 0.22 TCGA-67-3774-01 19 430712 430712 C A SHC2 Silent p.L382L 0.09 TCGA-67-3774-01 19 45515272 45515272 G C RELB Missense_Mutation p.R81P 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.521) TCGA-67-3774-01 19 51359612 51359612 G A KLK3 Missense_Mutation p.V55M 0.22 tolerated(0.05) possibly_damaging(0.887) TCGA-67-3774-01 19 55143640 55143640 C A LILRB1 Missense_Mutation p.P205T 0.20 deleterious(0.02) benign(0.331) TCGA-67-3774-01 19 55179599 55179599 G A LILRB4 3'UTR 0.18 TCGA-67-3774-01 19 57175617 57175617 T C ZNF835 Missense_Mutation p.Q317R 0.27 tolerated(0.3) benign(0.323) TCGA-67-3774-01 1 12855612 12855612 T A PRAMEF1 Missense_Mutation p.L298M 0.18 deleterious(0) probably_damaging(0.998) TCGA-67-3774-01 1 159410483 159410483 G A OR10J1 Missense_Mutation p.C312Y 0.19 tolerated(0.75) benign(0) TCGA-67-3774-01 1 175097855 175097855 C G TNN Missense_Mutation p.D1101E 0.15 deleterious(0) probably_damaging(1) TCGA-67-3774-01 1 226549183 226549183 T C PARP1 Missense_Mutation p.N1008S 0.27 tolerated(0.09) benign(0.129) TCGA-67-3774-01 1 237819148 237819148 G C RYR2 Missense_Mutation p.A2665P 0.38 probably_damaging(0.972) TCGA-67-3774-01 1 238090777 238090777 G A RP11-193H5.1 RNA 0.28 TCGA-67-3774-01 1 248028173 248028173 C A TRIM58 Missense_Mutation p.A228D 0.16 tolerated(0.22) benign(0.439) TCGA-67-3774-01 1 248737960 248737960 G T OR2T34 Nonsense_Mutation p.Y33* 0.17 TCGA-67-3774-01 1 26372400 26372400 C A SLC30A2 5'UTR 0.21 TCGA-67-3774-01 1 26603225 26603225 A G CEP85 Missense_Mutation p.N701S 0.16 deleterious(0.01) benign(0.307) TCGA-67-3774-01 1 32573666 32573666 A T KPNA6 5'UTR 0.23 TCGA-67-3774-01 1 3677924 3677924 C T CCDC27 Missense_Mutation p.A264V 0.19 deleterious(0.03) benign(0.018) TCGA-67-3774-01 1 39305178 39305178 T C RRAGC 3'UTR 0.21 TCGA-67-3774-01 1 43296552 43296552 C T ERMAP Missense_Mutation p.R67W 0.18 deleterious(0) probably_damaging(1) TCGA-67-3774-01 1 48764354 48764354 C A SPATA6 3'UTR 0.15 TCGA-67-3774-01 20 1629958 1629958 G A SIRPG Missense_Mutation p.S57F 0.14 deleterious(0.01) probably_damaging(0.954) TCGA-67-3774-01 20 3002719 3002719 G T PTPRA Missense_Mutation p.R394I 0.05 deleterious(0) benign(0.079) TCGA-67-3774-01 20 33128489 33128489 C A DYNLRB1 3'UTR 0.30 TCGA-67-3774-01 20 40054003 40054003 G T CHD6 Silent p.P1387P 0.27 TCGA-67-3774-01 20 4713162 4713162 A T PRNT Nonsense_Mutation p.L54* 0.18 TCGA-67-3774-01 20 48700726 48700726 G A UBE2V1 Silent p.P102P 0.28 TCGA-67-3774-01 20 60551116 60551116 A T TAF4 3'UTR 0.33 TCGA-67-3774-01 20 60897373 60897373 G A LAMA5 Missense_Mutation p.R2100C 0.13 possibly_damaging(0.573) TCGA-67-3774-01 21 38445003 38445003 G C PIGP 5'UTR 0.27 TCGA-67-3774-01 21 41465695 41465695 C T DSCAM Missense_Mutation p.G1268E 0.23 deleterious(0) probably_damaging(0.998) TCGA-67-3774-01 21 46047658 46047658 T A KRTAP10-9 Silent p.P190P 0.21 TCGA-67-3774-01 22 39479863 39479863 C A APOBEC3G Missense_Mutation p.Q237K 0.22 tolerated(1) benign(0.272) TCGA-67-3774-01 22 44221917 44221917 C T SULT4A1 Missense_Mutation p.M273I 0.15 deleterious(0.04) possibly_damaging(0.854) TCGA-67-3774-01 2 201814323 201814323 A C ORC2 Silent p.V94V 0.20 TCGA-67-3774-01 2 228750068 228750068 A T DAW1 Silent p.G14G 0.25 TCGA-67-3774-01 2 233839373 233839373 C T NGEF Silent p.K76K 0.18 TCGA-67-3774-01 2 239186473 239186473 G A PER2 Silent p.S35S 0.18 TCGA-67-3774-01 2 23985107 23985107 C A ATAD2B Silent p.V1122V 0.08 TCGA-67-3774-01 2 31178571 31178571 G T GALNT14 Silent p.I194I 0.20 TCGA-67-3774-01 3 122003109 122003109 C A CASR Missense_Mutation p.L780I 0.20 tolerated(0.38) benign(0.315) TCGA-67-3774-01 3 125877379 125877379 C A ALDH1L1 Silent p.G87G 0.18 TCGA-67-3774-01 3 154858045 154858045 G T MME Missense_Mutation p.Q307H 0.16 deleterious(0.01) benign(0.001) TCGA-67-3774-01 3 19961381 19961381 C A EFHB Missense_Mutation p.D314Y 0.18 deleterious(0) probably_damaging(0.997) TCGA-67-3774-01 3 38565414 38565414 C T EXOG Missense_Mutation p.A223V 0.19 deleterious(0) probably_damaging(0.956) TCGA-67-3774-01 3 42244104 42244104 G T TRAK1 Missense_Mutation p.S535I 0.16 deleterious(0) probably_damaging(0.999) TCGA-67-3774-01 3 48339978 48339978 G T NME6 Missense_Mutation p.A18D 0.06 tolerated(0.3) possibly_damaging(0.653) TCGA-67-3774-01 3 52273119 52273119 G A TWF2 5'UTR 0.31 TCGA-67-3774-01 3 53264635 53264635 T - TKT Frame_Shift_Del p.I323Mfs*56 0.31 TCGA-67-3774-01 3 53810712 53810712 T C CACNA1D Missense_Mutation p.L1502S 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-67-3774-01 3 54919343 54919343 G T CACNA2D3 Missense_Mutation p.A650S 0.19 tolerated(0.11) benign(0.026) TCGA-67-3774-01 3 77147419 77147419 G A ROBO2 Missense_Mutation p.G122R 0.22 deleterious(0) unknown(0) TCGA-67-3774-01 4 100540140 100540140 T - MTTP Frame_Shift_Del p.L743Yfs*5 0.12 TCGA-67-3774-01 4 170523812 170523812 T C NEK1 5'UTR 0.21 TCGA-67-3774-01 4 39868522 39868522 C T PDS5A Missense_Mutation p.M867I 0.17 tolerated(0.93) benign(0.03) TCGA-67-3774-01 4 53731759 53731759 C A RASL11B Missense_Mutation p.F178L 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-67-3774-01 4 6865249 6865249 C G KIAA0232 Missense_Mutation p.P1047R 0.25 tolerated(0.09) benign(0.272) TCGA-67-3774-01 4 69962330 69962330 C T UGT2B7 Missense_Mutation p.A31V 0.22 tolerated(0.27) benign(0.003) TCGA-67-3774-01 4 72994591 72994591 G A NPFFR2 Missense_Mutation p.G197S 0.19 deleterious(0.01) probably_damaging(1) TCGA-67-3774-01 4 77230372 77230372 G T FAM47E-STBD1 Missense_Mutation p.R99I 0.25 deleterious(0.03) benign(0.09) TCGA-67-3774-01 4 89183867 89183867 G C PPM1K Nonsense_Mutation p.Y333* 0.22 TCGA-67-3774-01 5 140261961 140261961 C T PCDHA13 Silent p.P36P 0.24 TCGA-67-3774-01 5 180486301 180486301 C A BTNL9 Missense_Mutation p.S349R 0.36 tolerated(0.07) benign(0.41) TCGA-67-3774-01 5 80388726 80388726 A C RASGRF2 Silent p.T499T 0.24 TCGA-67-3774-01 5 89931018 89931018 G A GPR98 Missense_Mutation p.V643I 0.25 benign(0.417) TCGA-67-3774-01 6 132641792 132641792 C T MOXD1 Silent p.T447T 0.12 TCGA-67-3774-01 6 167717596 167717596 G T UNC93A Missense_Mutation p.G272V 0.19 deleterious(0) possibly_damaging(0.616) TCGA-67-3774-01 6 26107644 26107644 T A HIST1H1T 3'UTR 0.22 TCGA-67-3774-01 6 34802159 34802159 C T UHRF1BP1 Silent p.R168R 0.26 TCGA-67-3774-01 6 35922941 35922941 G T SLC26A8 Silent p.V740V 0.16 TCGA-67-3774-01 6 54805391 54805391 G T FAM83B Missense_Mutation p.R541L 0.17 deleterious(0) probably_damaging(0.999) TCGA-67-3774-01 6 84025069 84025069 C T ME1 Missense_Mutation p.D222N 0.16 deleterious(0.04) benign(0.193) TCGA-67-3774-01 6 85473649 85473649 C A TBX18 Missense_Mutation p.G84V 0.36 tolerated(0.16) benign(0.003) TCGA-67-3774-01 7 31876897 31876897 G T PDE1C Missense_Mutation p.A427D 0.20 deleterious(0) probably_damaging(0.928) TCGA-67-3774-01 7 37252962 37252962 G T ELMO1 Missense_Mutation p.T311N 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-67-3774-01 7 72178676 72178676 T C TYW1B Missense_Mutation p.I51V 0.30 tolerated(0.06) possibly_damaging(0.665) TCGA-67-3774-01 8 114388965 114388965 A T CSMD3 Intron 0.24 TCGA-67-3774-01 8 131792844 131792844 G A ADCY8 Missense_Mutation p.P1183L 0.21 tolerated(0.47) benign(0) TCGA-67-3774-01 8 23305214 23305214 C A ENTPD4 Missense_Mutation p.V131L 0.16 deleterious(0.04) probably_damaging(0.998) TCGA-67-3774-01 8 2975964 2975964 A G CSMD1 Silent p.H2129H 0.18 TCGA-67-3774-01 8 41554286 41554286 A T ANK1 Silent p.S922S 0.22 TCGA-67-3774-01 8 88885786 88885786 C A DCAF4L2 Missense_Mutation p.L138F 0.21 tolerated(0.7) possibly_damaging(0.65) TCGA-67-3774-01 9 127818229 127818229 T A SCAI Silent p.P75P 0.36 TCGA-67-3774-01 9 139407481 139407481 G A NOTCH1 Missense_Mutation p.P820L 0.34 deleterious(0.02) probably_damaging(0.978) TCGA-67-3774-01 X 107408255 107408255 G T COL4A6 Silent p.P1275P 0.14 TCGA-67-3774-01 X 110489771 110489771 G A CAPN6 3'UTR 0.18 TCGA-67-3774-01 X 120008919 120008919 G T CT47B1 Silent p.V202V 0.21 TCGA-67-3774-01 X 120181507 120181507 G C GLUD2 5'UTR 0.32 TCGA-67-3774-01 X 127185520 127185520 G C ACTRT1 Missense_Mutation p.I222M 0.17 deleterious(0) benign(0.377) TCGA-67-3774-01 X 134305157 134305157 C A CT55 5'UTR 0.11 TCGA-67-3774-01 X 139865672 139865672 T C CDR1 3'UTR 0.13 TCGA-67-3774-01 X 152610347 152610348 - A ZNF275 Intron 0.42 TCGA-67-3774-01 X 154157209 154157209 G T F8 Missense_Mutation p.S1619Y 0.21 deleterious(0.03) benign(0.209) TCGA-67-3774-01 X 29973554 29973554 G T IL1RAPL1 Nonsense_Mutation p.E570* 0.19 TCGA-67-3774-01 X 54784148 54784148 C A ITIH6 Missense_Mutation p.G787C 0.23 tolerated(0.06) possibly_damaging(0.541) TCGA-67-3774-01 X 62974284 62974284 T A ARHGEF9 5'UTR 0.31 TCGA-67-3774-01 X 73524453 73524453 C A ZCCHC13 Missense_Mutation p.L118I 0.27 tolerated(0.11) benign(0.021) TCGA-67-3774-01 X 84561281 84561284 AGAG - POF1B Frame_Shift_Del p.S407Ffs*12 0.22 TCGA-67-3774-01 X 99663203 99663203 T A PCDH19 Silent p.A131A 0.18 TCGA-67-4679-01 10 102509565 102509565 G C PAX2 Missense_Mutation p.V36L 0.20 deleterious(0.02) benign(0.292) TCGA-67-4679-01 10 115531754 115531754 G A PLEKHS1 Missense_Mutation p.G187E 0.34 tolerated(0.14) benign(0.395) TCGA-67-4679-01 10 116008476 116008476 C T VWA2 Missense_Mutation p.P2S 0.06 tolerated_low_confidence(0.19) benign(0.015) TCGA-67-4679-01 10 117704336 117704336 C A ATRNL1 3'UTR 0.41 TCGA-67-4679-01 10 117849335 117849335 G A GFRA1 Missense_Mutation p.R372W 0.07 tolerated(0.08) possibly_damaging(0.881) TCGA-67-4679-01 10 127458921 127458921 C T MMP21 Missense_Mutation p.E407K 0.37 tolerated(0.8) benign(0.081) TCGA-67-4679-01 10 21120447 21120447 A C NEBL Silent p.T505T 0.31 TCGA-67-4679-01 10 32581941 32581941 C T EPC1 Missense_Mutation p.R214H 0.39 deleterious(0) probably_damaging(0.998) TCGA-67-4679-01 10 45799491 45799491 G A OR13A1 Missense_Mutation p.S127F 0.19 deleterious(0) possibly_damaging(0.753) TCGA-67-4679-01 10 48389149 48389149 G - RBP3 Frame_Shift_Del p.R577Afs*124 0.20 TCGA-67-4679-01 10 49632174 49632174 C - MAPK8 Frame_Shift_Del p.H221Tfs*29 0.24 TCGA-67-4679-01 10 70101065 70101065 G T HNRNPH3 Missense_Mutation p.M258I 0.29 tolerated(0.05) benign(0.19) TCGA-67-4679-01 10 79742445 79742445 T A POLR3A Missense_Mutation p.Y1187F 0.27 tolerated(0.45) benign(0.006) TCGA-67-4679-01 10 88419155 88419155 T C OPN4 Missense_Mutation p.F255L 0.28 deleterious(0.03) possibly_damaging(0.747) TCGA-67-4679-01 10 99125989 99125989 G A RRP12 Silent p.A1131A 0.35 TCGA-67-4679-01 11 113860510 113860510 G T HTR3A 3'UTR 0.25 TCGA-67-4679-01 11 116640920 116640920 A T BUD13 Missense_Mutation p.D54E 0.30 deleterious(0) possibly_damaging(0.524) TCGA-67-4679-01 11 125481361 125481361 C T STT3A Missense_Mutation p.R386W 0.24 deleterious(0.03) possibly_damaging(0.67) TCGA-67-4679-01 11 130068228 130068228 G T ST14 Silent p.T495T 0.27 TCGA-67-4679-01 11 17531201 17531201 G T USH1C Missense_Mutation p.P572Q 0.56 deleterious_low_confidence(0.01) benign(0.122) TCGA-67-4679-01 11 298710 298710 G A IFITM5 Nonsense_Mutation p.R64* 0.39 TCGA-67-4679-01 11 51515921 51515921 G T OR4C46 Missense_Mutation p.V214F 0.32 tolerated_low_confidence(0.05) benign(0.045) TCGA-67-4679-01 11 5221039 5221039 G T OR51V1 Missense_Mutation p.P298T 0.38 deleterious(0) probably_damaging(1) TCGA-67-4679-01 11 55703522 55703522 C T OR5I1 Missense_Mutation p.A119T 0.33 tolerated(0.05) benign(0.137) TCGA-67-4679-01 11 55761971 55761971 C A OR5F1 Missense_Mutation p.G44V 0.33 deleterious(0.02) benign(0.194) TCGA-67-4679-01 11 55904334 55904334 G T OR8J3 Silent p.P287P 0.31 TCGA-67-4679-01 11 57995776 57995776 C T OR10Q1 Missense_Mutation p.R191H 0.50 tolerated(0.09) benign(0.192) TCGA-67-4679-01 11 61053874 61053874 G T VWCE Nonsense_Mutation p.C151* 0.31 TCGA-67-4679-01 11 62415751 62415751 C - INTS5 Frame_Shift_Del p.E601Nfs*21 0.20 TCGA-67-4679-01 11 6478596 6478596 T A TRIM3 Missense_Mutation p.E209V 0.35 tolerated(0.25) probably_damaging(0.974) TCGA-67-4679-01 11 68517945 68517945 G T MTL5 Missense_Mutation p.P62T 0.40 tolerated_low_confidence(0.31) benign(0.021) TCGA-67-4679-01 11 6891570 6891570 G A OR10A2 Missense_Mutation p.M195I 0.44 tolerated(0.13) possibly_damaging(0.588) TCGA-67-4679-01 11 76872065 76872065 C G MYO7A Missense_Mutation p.A416G 0.35 deleterious(0.03) probably_damaging(0.972) TCGA-67-4679-01 11 82698683 82698683 A T RAB30 Missense_Mutation p.W103R 0.33 deleterious(0) probably_damaging(1) TCGA-67-4679-01 11 89402588 89402588 A G FOLH1B RNA 0.33 TCGA-67-4679-01 11 92257849 92257849 C T FAT3 Silent p.Y1114Y 0.40 TCGA-67-4679-01 11 92531124 92531124 C A FAT3 Missense_Mutation p.P1649T 0.45 probably_damaging(1) TCGA-67-4679-01 12 104096985 104096985 C A STAB2 Silent p.I1258I 0.43 TCGA-67-4679-01 12 113314634 113314634 G A RPH3A Silent p.E378E 0.25 TCGA-67-4679-01 12 121712338 121712338 C A CAMKK2 5'UTR 0.50 TCGA-67-4679-01 12 122693021 122693021 T A DIABLO Silent p.A209A 0.25 TCGA-67-4679-01 12 124330219 124330219 G T DNAH10 Silent p.V1693V 0.26 TCGA-67-4679-01 12 132195832 132195832 G A SFSWAP Missense_Mutation p.E20K 0.37 tolerated_low_confidence(0.05) probably_damaging(0.99) TCGA-67-4679-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.20 deleterious(0.02) possibly_damaging(0.773) TCGA-67-4679-01 12 2786340 2786340 C A CACNA1C Missense_Mutation p.Q1685K 0.25 tolerated(0.35) benign(0.048) TCGA-67-4679-01 12 4737964 4737964 G T AKAP3 Missense_Mutation p.S35Y 0.35 deleterious(0) possibly_damaging(0.907) TCGA-67-4679-01 12 53565130 53565130 C A CSAD Missense_Mutation p.A210S 0.28 deleterious(0.03) benign(0.174) TCGA-67-4679-01 12 55250629 55250629 C A MUCL1 Missense_Mutation p.T59N 0.39 deleterious_low_confidence(0) unknown(0) TCGA-67-4679-01 12 72388308 72388308 T G TPH2 Missense_Mutation p.L344R 0.25 deleterious(0) probably_damaging(0.997) TCGA-67-4679-01 12 7803640 7803640 C A APOBEC1 Silent p.L180L 0.36 TCGA-67-4679-01 12 93100529 93100529 C - C12orf74 Frame_Shift_Del p.P42Qfs*10 0.18 TCGA-67-4679-01 12 99053024 99053024 C A APAF1 Silent p.R205R 0.34 TCGA-67-4679-01 13 109507894 109507894 A T MYO16 Missense_Mutation p.Q429L 0.59 tolerated(0.1) probably_damaging(0.964) TCGA-67-4679-01 13 110831356 110831356 C A COL4A1 Missense_Mutation p.G791V 0.23 benign(0.172) TCGA-67-4679-01 13 28537437 28537437 G C CDX2 Missense_Mutation p.Q253E 0.34 tolerated(0.41) unknown(0) TCGA-67-4679-01 13 46358033 46358033 C A SIAH3 Missense_Mutation p.A99S 0.43 tolerated(0.7) benign(0.002) TCGA-67-4679-01 13 52972283 52972283 T A THSD1 Silent p.V35V 0.32 TCGA-67-4679-01 13 58207804 58207804 G T PCDH17 Missense_Mutation p.R375L 0.34 deleterious(0.02) probably_damaging(1) TCGA-67-4679-01 13 61102923 61102923 C T TDRD3 Missense_Mutation p.P522S 0.07 tolerated(0.19) benign(0.043) TCGA-67-4679-01 14 107131482 107131482 G T IGHV3-66 5'UTR 0.54 TCGA-67-4679-01 14 107131483 107131483 G T IGHV3-66 5'UTR 0.54 TCGA-67-4679-01 14 20002247 20002247 C A POTEM Missense_Mutation p.G392V 0.18 tolerated(0.16) probably_damaging(0.963) TCGA-67-4679-01 14 24976666 24976666 G T CMA1 Nonsense_Mutation p.Y35* 0.26 TCGA-67-4679-01 14 31598245 31598245 G A HECTD1 Silent p.S1444S 0.38 TCGA-67-4679-01 14 55836410 55836410 C T ATG14 Missense_Mutation p.S469N 0.38 tolerated(0.54) probably_damaging(0.932) TCGA-67-4679-01 14 73360773 73360773 G T DPF3 Silent p.P8P 0.35 TCGA-67-4679-01 14 89034479 89034479 C G ZC3H14 Missense_Mutation p.T59R 0.59 deleterious(0) probably_damaging(0.999) TCGA-67-4679-01 14 95884179 95884179 C A SYNE3 Missense_Mutation p.G971V 0.51 deleterious(0) probably_damaging(0.999) TCGA-67-4679-01 15 34080643 34080644 - A RYR3 Nonsense_Mutation p.Y3272* 0.21 TCGA-67-4679-01 15 40954447 40954447 A T CASC5 3'UTR 0.35 TCGA-67-4679-01 15 48500060 48500060 C T SLC12A1 Silent p.T48T 0.26 TCGA-67-4679-01 15 50868037 50868037 T A TRPM7 Intron 0.30 TCGA-67-4679-01 15 65357561 65357562 - G RASL12 Frame_Shift_Ins p.N52Qfs*56 0.50 TCGA-67-4679-01 15 66845330 66845330 A T LCTL Missense_Mutation p.F397I 0.27 deleterious(0) possibly_damaging(0.861) TCGA-67-4679-01 15 88476290 88476290 G A NTRK3 Silent p.I614I 0.27 TCGA-67-4679-01 15 89421235 89421235 C - HAPLN3 Frame_Shift_Del p.R350Pfs*41 0.24 TCGA-67-4679-01 15 93588628 93588628 C A RGMA Missense_Mutation p.G326V 0.36 deleterious(0) probably_damaging(1) TCGA-67-4679-01 16 1033796 1033796 A G SOX8 Missense_Mutation p.K164R 0.24 deleterious(0.04) probably_damaging(0.993) TCGA-67-4679-01 16 2158452 2158452 G A PKD1 Missense_Mutation p.T2239M 0.57 probably_damaging(1) TCGA-67-4679-01 16 21854828 21854828 C A NPIPB4 Missense_Mutation p.V142F 0.18 probably_damaging(0.962) TCGA-67-4679-01 16 3119063 3119063 G T IL32 Missense_Mutation p.V92F 0.12 tolerated(0.58) benign(0.082) TCGA-67-4679-01 16 32894031 32894031 G T RP11-989E6.3 5'Flank 0.50 TCGA-67-4679-01 16 56667670 56667670 C T MT1M Silent p.C34C 0.30 TCGA-67-4679-01 16 57717902 57717902 G A GPR97 Missense_Mutation p.G314S 0.30 deleterious(0.03) benign(0.007) TCGA-67-4679-01 16 88780888 88780888 G C CTU2 Missense_Mutation p.A399P 0.38 tolerated(0.08) benign(0.01) TCGA-67-4679-01 17 10401161 10401161 C A MYH1 Nonsense_Mutation p.E1419* 0.38 TCGA-67-4679-01 17 10432732 10432732 C G MYH2 Missense_Mutation p.E1062Q 0.38 deleterious(0.01) probably_damaging(1) TCGA-67-4679-01 17 19216459 19216459 G T EPN2 Missense_Mutation p.M338I 0.38 tolerated(0.06) benign(0.01) TCGA-67-4679-01 17 19645887 19645887 C T ALDH3A1 Missense_Mutation p.A151T 0.07 deleterious(0.05) possibly_damaging(0.64) TCGA-67-4679-01 17 21201758 21201758 C A MAP2K3 Missense_Mutation p.S28Y 0.14 deleterious(0.04) benign(0.054) TCGA-67-4679-01 17 27031584 27031584 G C PROCA1 Intron 0.36 TCGA-67-4679-01 17 29280311 29280311 G T ADAP2 Silent p.V249V 0.39 TCGA-67-4679-01 17 36484370 36484370 C T GPR179 Silent p.E1694E 0.38 TCGA-67-4679-01 17 4167249 4167249 A C ANKFY1 5'Flank 0.39 TCGA-67-4679-01 17 42882827 42882827 C T GJC1 Missense_Mutation p.R120H 0.20 tolerated(0.46) benign(0.001) TCGA-67-4679-01 17 4635147 4635147 T G MED11 Silent p.A54A 0.06 TCGA-67-4679-01 17 46627701 46627701 G T HOXB3 Missense_Mutation p.L431M 0.39 deleterious(0) probably_damaging(0.999) TCGA-67-4679-01 17 48183282 48183282 G A PDK2 Silent p.R122R 0.24 TCGA-67-4679-01 17 51902457 51902457 G T KIF2B 3'UTR 0.25 TCGA-67-4679-01 17 58525167 58525167 A C APPBP2 Missense_Mutation p.S511R 0.33 deleterious(0) probably_damaging(0.997) TCGA-67-4679-01 17 66933232 66933232 T A ABCA8 Missense_Mutation p.D109V 0.13 deleterious(0.02) probably_damaging(0.931) TCGA-67-4679-01 17 7358971 7358971 A G CHRNB1 Intron 0.40 TCGA-67-4679-01 17 7630539 7630539 A T DNAH2 Missense_Mutation p.T110S 0.36 benign(0.001) TCGA-67-4679-01 17 960259 960259 G C ABR Missense_Mutation p.P489A 0.26 deleterious(0.02) probably_damaging(0.997) TCGA-67-4679-01 18 28609517 28609517 C A DSC3 Missense_Mutation p.M144I 0.41 tolerated(0.4) benign(0.129) TCGA-67-4679-01 18 28711658 28711658 C G DSC1 Missense_Mutation p.G796R 0.29 deleterious(0.03) possibly_damaging(0.751) TCGA-67-4679-01 18 28983407 28983407 C T DSG4 Silent p.T482T 0.38 TCGA-67-4679-01 18 54398639 54398639 G T WDR7 Silent p.G600G 0.30 TCGA-67-4679-01 18 580598 580598 C A CETN1 Missense_Mutation p.P64T 0.25 tolerated(0.15) probably_damaging(0.96) TCGA-67-4679-01 18 59157856 59157856 G T CDH20 Missense_Mutation p.G24W 0.39 tolerated(0.18) possibly_damaging(0.594) TCGA-67-4679-01 18 61654208 61654208 A T SERPINB8 Missense_Mutation p.E274V 0.41 deleterious(0) possibly_damaging(0.844) TCGA-67-4679-01 18 7050841 7050841 C A LAMA1 Missense_Mutation p.S147I 0.34 deleterious(0.04) benign(0.222) TCGA-67-4679-01 18 72183517 72183517 G T CNDP2 Nonsense_Mutation p.E320* 0.29 TCGA-67-4679-01 18 74980680 74980680 T A GALR1 Missense_Mutation p.L291Q 0.27 deleterious(0) probably_damaging(1) TCGA-67-4679-01 19 11833620 11833620 C G ZNF823 Silent p.T243T 0.37 TCGA-67-4679-01 19 12821473 12821473 T A TNPO2 Missense_Mutation p.K411M 0.44 deleterious(0) probably_damaging(0.954) TCGA-67-4679-01 19 17895735 17895735 T A FCHO1 Splice_Site p.X809_splice 0.36 TCGA-67-4679-01 19 19681572 19681572 C G PBX4 Silent p.L88L 0.34 TCGA-67-4679-01 19 21606023 21606023 G T ZNF493 Missense_Mutation p.G188C 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-67-4679-01 19 23543380 23543380 C A ZNF91 Nonsense_Mutation p.E801* 0.33 TCGA-67-4679-01 19 35940868 35940868 C A FFAR2 Silent p.L84L 0.31 TCGA-67-4679-01 19 36332708 36332708 G A NPHS1 Silent p.N908N 0.27 TCGA-67-4679-01 19 43228105 43228105 C T PSG3 3'UTR 0.30 TCGA-67-4679-01 19 43411928 43411928 T A PSG6 Missense_Mutation p.E262V 0.36 tolerated(0.49) possibly_damaging(0.686) TCGA-67-4679-01 19 44932853 44932853 G T ZNF229 Silent p.T701T 0.23 TCGA-67-4679-01 19 4504673 4504673 G T PLIN4 Missense_Mutation p.A1291E 0.31 deleterious(0) probably_damaging(0.997) TCGA-67-4679-01 19 48382293 48382293 C A SULT2A1 Missense_Mutation p.Q189H 0.38 deleterious(0.01) benign(0.021) TCGA-67-4679-01 19 50862784 50862784 C A NAPSA Silent p.G304G 0.43 TCGA-67-4679-01 19 52249723 52249723 G T FPR1 Silent p.A175A 0.26 TCGA-67-4679-01 19 58563859 58563859 C A ZSCAN1 Missense_Mutation p.A156E 0.39 deleterious(0.02) possibly_damaging(0.815) TCGA-67-4679-01 19 6501382 6501382 G T TUBB4A Missense_Mutation p.L65M 0.32 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-67-4679-01 19 763550 763550 G C MISP Missense_Mutation p.R667P 0.12 deleterious(0) probably_damaging(0.999) TCGA-67-4679-01 19 8841487 8841487 G C OR2Z1 Missense_Mutation p.V33L 0.30 tolerated(0.94) benign(0.002) TCGA-67-4679-01 19 9009593 9009593 C A MUC16 Missense_Mutation p.G13045C 0.42 probably_damaging(0.988) TCGA-67-4679-01 19 9073672 9073672 C T MUC16 Missense_Mutation p.E4592K 0.20 unknown(0) TCGA-67-4679-01 19 9089924 9089924 T A MUC16 Missense_Mutation p.T631S 0.40 unknown(0) TCGA-67-4679-01 19 9525173 9525173 T A ZNF266 Missense_Mutation p.D143V 0.39 deleterious(0) benign(0.01) TCGA-67-4679-01 19 9578057 9578057 C T ZNF560 Silent p.G522G 0.21 TCGA-67-4679-01 1 111730977 111730977 T C DENND2D Missense_Mutation p.N372S 0.39 tolerated(0.18) probably_damaging(0.98) TCGA-67-4679-01 1 11227545 11227545 G A MTOR Missense_Mutation p.A1428V 0.37 deleterious(0) benign(0.044) TCGA-67-4679-01 1 1154154 1154154 T C SDF4 Missense_Mutation p.D244G 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-67-4679-01 1 119925620 119925620 C A HAO2 Missense_Mutation p.P72T 0.28 deleterious(0) probably_damaging(1) TCGA-67-4679-01 1 120510080 120510080 C G NOTCH2 Missense_Mutation p.G477R 0.33 tolerated(0.31) probably_damaging(0.988) TCGA-67-4679-01 1 12887308 12887308 C G PRAMEF11 Missense_Mutation p.Q183H 0.03 tolerated(0.06) possibly_damaging(0.555) TCGA-67-4679-01 1 149399202 149399202 G C HIST2H3PS2 3'Flank 0.08 TCGA-67-4679-01 1 154172963 154172963 A T C1orf189 Nonsense_Mutation p.L59* 0.32 TCGA-67-4679-01 1 155149759 155149759 A T TRIM46 Missense_Mutation p.H301L 0.31 tolerated(0.07) benign(0.276) TCGA-67-4679-01 1 158390486 158390486 G C OR10K2 Missense_Mutation p.I57M 0.24 deleterious(0.01) benign(0.001) TCGA-67-4679-01 1 160121797 160121797 A T ATP1A4 5'UTR 0.20 TCGA-67-4679-01 1 160393962 160393962 G T VANGL2 Missense_Mutation p.M398I 0.32 tolerated(0.11) benign(0.136) TCGA-67-4679-01 1 169493096 169493096 A T F5 Nonsense_Mutation p.Y1945* 0.22 TCGA-67-4679-01 1 171254553 171254553 C A FMO1 Missense_Mutation p.T490N 0.25 deleterious(0.02) benign(0.202) TCGA-67-4679-01 1 173545825 173545825 G T SLC9C2 Missense_Mutation p.P293T 0.23 deleterious(0.01) probably_damaging(0.983) TCGA-67-4679-01 1 175335276 175335276 T A TNR Splice_Site p.X685_splice 0.22 TCGA-67-4679-01 1 17552330 17552330 G T PADI1 Missense_Mutation p.G145C 0.29 deleterious(0) probably_damaging(1) TCGA-67-4679-01 1 196658675 196658675 C A CFH Missense_Mutation p.P364T 0.24 deleterious(0.01) possibly_damaging(0.48) TCGA-67-4679-01 1 197087023 197087023 C A ASPM Missense_Mutation p.V1321F 0.16 tolerated(0.46) benign(0.042) TCGA-67-4679-01 1 203740015 203740015 T A LAX1 Missense_Mutation p.L50Q 0.24 deleterious(0) probably_damaging(0.984) TCGA-67-4679-01 1 211652548 211652548 G A RD3 Missense_Mutation p.R140C 0.26 deleterious(0) possibly_damaging(0.899) TCGA-67-4679-01 1 212977679 212977679 C T TATDN3 Silent p.S113S 0.15 TCGA-67-4679-01 1 221053271 221053271 G T HLX Silent p.S24S 0.29 TCGA-67-4679-01 1 22336244 22336244 G T CELA3A Missense_Mutation p.W230L 0.27 deleterious(0.01) benign(0.313) TCGA-67-4679-01 1 223402684 223402684 G T SUSD4 Missense_Mutation p.H257Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-67-4679-01 1 223536632 223536632 G A SUSD4 Nonsense_Mutation p.Q46* 0.42 TCGA-67-4679-01 1 228871753 228871753 T A RHOU Splice_Site p.X88_splice 0.28 TCGA-67-4679-01 1 229568145 229568145 T A ACTA1 Missense_Mutation p.H163L 0.15 deleterious_low_confidence(0) possibly_damaging(0.892) TCGA-67-4679-01 1 232538195 232538195 G T SIPA1L2 Silent p.T1655T 0.27 TCGA-67-4679-01 1 232601023 232601023 C A SIPA1L2 Nonsense_Mutation p.E795* 0.21 TCGA-67-4679-01 1 235605137 235605137 G T TBCE Missense_Mutation p.A427S 0.18 deleterious(0) possibly_damaging(0.721) TCGA-67-4679-01 1 237765331 237765331 C A RYR2 Missense_Mutation p.P1535T 0.32 probably_damaging(0.986) TCGA-67-4679-01 1 237895442 237895442 G T RYR2 Nonsense_Mutation p.E3678* 0.23 TCGA-67-4679-01 1 240370521 240370521 C A FMN2 Silent p.P803P 0.26 TCGA-67-4679-01 1 247014498 247014498 C A AHCTF1 Nonsense_Mutation p.E1613* 0.21 TCGA-67-4679-01 1 247875220 247875220 C G OR6F1 Missense_Mutation p.V280L 0.24 deleterious(0.02) benign(0.12) TCGA-67-4679-01 1 248685105 248685105 C A OR2G6 Missense_Mutation p.S53Y 0.54 deleterious(0.02) benign(0.197) TCGA-67-4679-01 1 248685450 248685450 T G OR2G6 Missense_Mutation p.L168R 0.19 tolerated(0.41) benign(0.097) TCGA-67-4679-01 1 27120800 27120800 C T PIGV Missense_Mutation p.P92L 0.45 deleterious(0) probably_damaging(1) TCGA-67-4679-01 1 36202032 36202032 C A CLSPN 3'UTR 0.43 TCGA-67-4679-01 1 36786257 36786257 G T SH3D21 Missense_Mutation p.D665Y 0.47 deleterious(0) possibly_damaging(0.795) TCGA-67-4679-01 1 36786292 36786292 C A SH3D21 Silent p.V676V 0.23 TCGA-67-4679-01 1 44415696 44415696 A C IPO13 Missense_Mutation p.Q231P 0.30 tolerated(0.27) benign(0.005) TCGA-67-4679-01 1 44415697 44415697 G C IPO13 Missense_Mutation p.Q231H 0.30 tolerated(0.12) benign(0.063) TCGA-67-4679-01 1 48865286 48865286 C A SPATA6 Nonsense_Mutation p.E173* 0.32 TCGA-67-4679-01 1 57347232 57347232 C T C8A Silent p.T193T 0.24 TCGA-67-4679-01 1 66101910 66101910 G A LEPR Missense_Mutation p.A904T 0.32 deleterious(0.01) benign(0.039) TCGA-67-4679-01 1 75685529 75685529 G C SLC44A5 Missense_Mutation p.F378L 0.29 deleterious(0.01) probably_damaging(0.956) TCGA-67-4679-01 1 85494886 85494886 T C MCOLN3 Missense_Mutation p.I245M 0.06 deleterious(0) probably_damaging(0.994) TCGA-67-4679-01 20 1961379 1961379 C A PDYN Nonsense_Mutation p.E119* 0.35 TCGA-67-4679-01 20 1961380 1961380 C A PDYN Missense_Mutation p.K118N 0.33 tolerated(0.06) benign(0.159) TCGA-67-4679-01 20 30232741 30232741 C A COX4I2 3'UTR 0.36 TCGA-67-4679-01 20 32295577 32295577 C A PXMP4 Missense_Mutation p.D192Y 0.34 deleterious(0) probably_damaging(0.954) TCGA-67-4679-01 20 37580963 37580963 T C FAM83D Silent p.L550L 0.33 TCGA-67-4679-01 20 40944583 40944583 G T PTPRT Missense_Mutation p.A640D 0.29 tolerated(0.33) benign(0.154) TCGA-67-4679-01 20 44526386 44526386 G A CTSA Missense_Mutation p.V417I 0.28 tolerated(0.09) benign(0.058) TCGA-67-4679-01 20 47782739 47782739 G - STAU1 5'UTR 0.22 TCGA-67-4679-01 20 57485035 57485035 T C GNAS Missense_Mutation p.F933S 0.14 deleterious(0) probably_damaging(1) TCGA-67-4679-01 20 57767353 57767353 G T ZNF831 Missense_Mutation p.V427L 0.37 deleterious(0) probably_damaging(0.995) TCGA-67-4679-01 20 57767489 57767489 C A ZNF831 Missense_Mutation p.S472Y 0.38 deleterious(0) probably_damaging(0.986) TCGA-67-4679-01 20 62593643 62593643 C A ZNF512B Missense_Mutation p.V750F 0.40 deleterious(0.02) benign(0.075) TCGA-67-4679-01 21 10941974 10941974 T A TPTE Splice_Site p.X244_splice 0.10 TCGA-67-4679-01 21 11038727 11038727 C A BAGE2 Splice_Site 0.05 TCGA-67-4679-01 22 26118422 26118422 C T ADRBK2 3'UTR 0.36 TCGA-67-4679-01 22 27003955 27003955 G T CRYBB1 Silent p.R110R 0.34 TCGA-67-4679-01 22 30742488 30742488 G C SF3A1 Missense_Mutation p.A69G 0.37 deleterious(0.01) probably_damaging(0.983) TCGA-67-4679-01 22 34046467 34046467 G A LARGE Silent p.H98H 0.35 TCGA-67-4679-01 22 39709669 39709669 T A RPL3 Silent p.G339G 0.34 TCGA-67-4679-01 22 44967343 44967343 G A LINC00207 RNA 0.23 TCGA-67-4679-01 2 125367414 125367414 A T CNTNAP5 Missense_Mutation p.Q597L 0.26 tolerated(0.37) benign(0.024) TCGA-67-4679-01 2 131785625 131785625 G T ARHGEF4 Nonsense_Mutation p.G179* 0.37 TCGA-67-4679-01 2 131785626 131785626 G T ARHGEF4 Missense_Mutation p.G179V 0.35 deleterious(0) benign(0.244) TCGA-67-4679-01 2 141093302 141093302 G T LRP1B Missense_Mutation p.H4000N 0.29 benign(0.107) TCGA-67-4679-01 2 145274906 145274906 C A ZEB2 Silent p.P4P 0.36 TCGA-67-4679-01 2 168103076 168103076 C A XIRP2 Nonsense_Mutation p.S1725* 0.32 TCGA-67-4679-01 2 168104598 168104598 C T XIRP2 Silent p.H2232H 0.28 TCGA-67-4679-01 2 170031733 170031733 C G LRP2 Missense_Mutation p.D3580H 0.42 probably_damaging(1) TCGA-67-4679-01 2 179702359 179702359 A T CCDC141 Missense_Mutation p.L1196Q 0.38 deleterious(0.02) benign(0.426) TCGA-67-4679-01 2 179732906 179732906 C G CCDC141 Missense_Mutation p.E807D 0.32 tolerated(0.07) benign(0.106) TCGA-67-4679-01 2 188211044 188211044 C A CALCRL Missense_Mutation p.S418I 0.32 deleterious(0) benign(0.128) TCGA-67-4679-01 2 197183409 197183409 C A HECW2 Missense_Mutation p.E735D 0.31 tolerated_low_confidence(0.16) benign(0.002) TCGA-67-4679-01 2 207175047 207175047 G T ZDBF2 Missense_Mutation p.R1932L 0.33 tolerated(0.35) benign(0.008) TCGA-67-4679-01 2 212285330 212285330 C T ERBB4 Missense_Mutation p.D991N 0.33 deleterious(0) benign(0.439) TCGA-67-4679-01 2 219896377 219896377 C A CCDC108 Nonsense_Mutation p.E217* 0.33 TCGA-67-4679-01 2 220503422 220503422 C T SLC4A3 Intron 0.48 TCGA-67-4679-01 2 234217807 234217807 G T SAG Splice_Site 0.29 TCGA-67-4679-01 2 237489664 237489664 G T ACKR3 Missense_Mutation p.V186F 0.25 deleterious(0.01) possibly_damaging(0.878) TCGA-67-4679-01 2 238285673 238285673 C A COL6A3 Missense_Mutation p.D938Y 0.36 probably_damaging(0.989) TCGA-67-4679-01 2 33411922 33411922 G A LTBP1 Splice_Site p.X401_splice 0.31 TCGA-67-4679-01 2 3749102 3749102 G A ALLC Missense_Mutation p.G284D 0.33 deleterious(0) probably_damaging(1) TCGA-67-4679-01 2 44065004 44065004 G T ABCG5 Missense_Mutation p.S78R 0.30 deleterious(0.04) possibly_damaging(0.78) TCGA-67-4679-01 2 69300168 69300168 A T ANTXR1 Missense_Mutation p.S143C 0.31 deleterious(0) probably_damaging(1) TCGA-67-4679-01 2 72361997 72361997 G T CYP26B1 Silent p.R252R 0.33 TCGA-67-4679-01 2 79314024 79314024 G T REG1B Silent p.R33R 0.34 TCGA-67-4679-01 2 88472892 88472892 G C THNSL2 Missense_Mutation p.D75H 0.29 deleterious(0.02) possibly_damaging(0.572) TCGA-67-4679-01 3 114070511 114070511 G A ZBTB20 Silent p.S138S 0.10 TCGA-67-4679-01 3 122864366 122864366 C T PDIA5 Intron 0.20 TCGA-67-4679-01 3 123337559 123337559 G T MYLK Silent p.P1809P 0.31 TCGA-67-4679-01 3 130380698 130380699 - C COL6A6 Frame_Shift_Ins p.D2019Rfs*12 0.30 TCGA-67-4679-01 3 132438549 132438549 C G NPHP3 Missense_Mutation p.K173N 0.23 deleterious(0) probably_damaging(0.935) TCGA-67-4679-01 3 133497484 133497484 C A TF 3'UTR 0.38 TCGA-67-4679-01 3 142503761 142503761 A T TRPC1 Silent p.A392A 0.22 TCGA-67-4679-01 3 148459219 148459220 CC A AGTR1 Frame_Shift_Del p.P133Kfs*2 0.28 TCGA-67-4679-01 3 158980354 158980354 G T IQCJ-SCHIP1 Missense_Mutation p.R58L 0.22 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-67-4679-01 3 165548104 165548104 C A BCHE Nonsense_Mutation p.G240* 0.32 TCGA-67-4679-01 3 192516570 192516570 G A MB21D2 Missense_Mutation p.L361F 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-67-4679-01 3 194061747 194061747 G A CPN2 3'UTR 0.62 TCGA-67-4679-01 3 38622838 38622838 G A SCN5A Silent p.L938L 0.20 TCGA-67-4679-01 3 38891959 38891959 T C SCN11A Intron 0.31 TCGA-67-4679-01 3 41266967 41266967 G T CTNNB1 Missense_Mutation p.C213F 0.21 tolerated(0.7) benign(0.013) TCGA-67-4679-01 3 46586690 46586691 - G LRRC2 Frame_Shift_Ins p.Q60Pfs*21 0.23 TCGA-67-4679-01 3 47032756 47032756 C T NBEAL2 Missense_Mutation p.L202F 0.33 deleterious(0.03) benign(0.021) TCGA-67-4679-01 3 52556665 52556665 C T STAB1 Silent p.A2235A 0.04 TCGA-67-4679-01 3 54537612 54537612 C G CACNA2D3 Missense_Mutation p.H159D 0.21 deleterious(0) probably_damaging(0.999) TCGA-67-4679-01 3 58381436 58381436 C T PXK Nonsense_Mutation p.Q258* 0.34 TCGA-67-4679-01 3 77600006 77600006 G T ROBO2 Missense_Mutation p.S382I 0.30 deleterious(0) possibly_damaging(0.727) TCGA-67-4679-01 3 8977689 8977689 G C RAD18 Missense_Mutation p.S252C 0.06 deleterious(0) probably_damaging(0.999) TCGA-67-4679-01 4 113351658 113351658 G T ALPK1 Nonsense_Mutation p.E319* 0.34 TCGA-67-4679-01 4 114278501 114278501 C A ANK2 Silent p.P2909P 0.27 TCGA-67-4679-01 4 155507713 155507713 T G FGA Missense_Mutation p.S290R 0.31 tolerated(0.52) benign(0.307) TCGA-67-4679-01 4 162402195 162402195 C A FSTL5 Missense_Mutation p.V529L 0.30 tolerated(0.09) possibly_damaging(0.891) TCGA-67-4679-01 4 169317202 169317202 G A DDX60L Silent p.L1189L 0.15 TCGA-67-4679-01 4 186423472 186423472 C A PDLIM3 Silent p.T357T 0.29 TCGA-67-4679-01 4 22389449 22389449 C A GPR125 Missense_Mutation p.G1282V 0.40 tolerated(0.1) probably_damaging(0.999) TCGA-67-4679-01 4 2273100 2273100 T A ZFYVE28 Missense_Mutation p.T824S 0.36 tolerated(0.26) benign(0.276) TCGA-67-4679-01 4 25408818 25408818 G T ANAPC4 Splice_Site p.X459_splice 0.24 TCGA-67-4679-01 4 54257289 54257289 A T FIP1L1 Missense_Mutation p.T207S 0.32 tolerated(0.31) benign(0.036) TCGA-67-4679-01 4 57677865 57677865 C T SPINK2 Silent p.L65L 0.32 TCGA-67-4679-01 4 647587 647587 A G PDE6B Intron 0.29 TCGA-67-4679-01 4 71889280 71889280 A G DCK Missense_Mutation p.I136V 0.36 tolerated(0.4) benign(0.005) TCGA-67-4679-01 4 8608492 8608492 G T CPZ Missense_Mutation p.G312V 0.24 deleterious(0) probably_damaging(0.999) TCGA-67-4679-01 5 102895772 102895772 C A NUDT12 Nonsense_Mutation p.E60* 0.38 TCGA-67-4679-01 5 108380486 108380486 C A FER Missense_Mutation p.Q607K 0.27 tolerated(0.33) benign(0.006) TCGA-67-4679-01 5 112769471 112769471 C T TSSK1B Missense_Mutation p.G356R 0.45 tolerated_low_confidence(0.12) benign(0) TCGA-67-4679-01 5 11346695 11346695 C A CTNND2 Missense_Mutation p.G473C 0.43 deleterious(0.02) benign(0.035) TCGA-67-4679-01 5 139216787 139216787 C T PSD2 Silent p.Y543Y 0.26 TCGA-67-4679-01 5 140724542 140724542 C G PCDHGA3 Missense_Mutation p.F314L 0.05 tolerated_low_confidence(0.09) benign(0.057) TCGA-67-4679-01 5 140773331 140773331 G T PCDHGA8 Missense_Mutation p.M317I 0.27 tolerated_low_confidence(0.49) benign(0.018) TCGA-67-4679-01 5 140773464 140773464 C T PCDHGA8 Missense_Mutation p.P362S 0.26 tolerated_low_confidence(0.06) possibly_damaging(0.626) TCGA-67-4679-01 5 149677742 149677742 G T ARSI Missense_Mutation p.L249M 0.21 tolerated(0.17) possibly_damaging(0.877) TCGA-67-4679-01 5 150322156 150322156 T A ZNF300P1 RNA 0.41 TCGA-67-4679-01 5 156353276 156353276 G T TIMD4 Missense_Mutation p.Q298K 0.31 tolerated(0.31) benign(0.071) TCGA-67-4679-01 5 156923992 156923992 C A ADAM19 Missense_Mutation p.D502Y 0.32 deleterious(0) probably_damaging(1) TCGA-67-4679-01 5 171849422 171849422 G A SH3PXD2B Nonsense_Mutation p.Q52* 0.30 TCGA-67-4679-01 5 179729493 179729493 A T GFPT2 Missense_Mutation p.L645H 0.34 deleterious(0) probably_damaging(0.998) TCGA-67-4679-01 5 5303785 5303785 C A ADAMTS16 Missense_Mutation p.T1031N 0.34 tolerated(0.53) benign(0.024) TCGA-67-4679-01 5 57790735 57790735 C A GAPT Silent p.I124I 0.34 TCGA-67-4679-01 5 66462274 66462274 G C MAST4 Missense_Mutation p.G2423R 0.24 possibly_damaging(0.71) TCGA-67-4679-01 5 79033143 79033143 A C CMYA5 Missense_Mutation p.Q2852P 0.31 probably_damaging(0.93) TCGA-67-4679-01 5 82833850 82833850 A T VCAN Silent p.I1676I 0.41 TCGA-67-4679-01 5 94999696 94999696 A T SPATA9 Silent p.T145T 0.30 TCGA-67-4679-01 5 96503657 96503657 C A RIOK2 Missense_Mutation p.G304V 0.36 deleterious(0) probably_damaging(0.991) TCGA-67-4679-01 6 128307001 128307001 C A PTPRK Missense_Mutation p.R1045L 0.74 deleterious(0.03) probably_damaging(0.994) TCGA-67-4679-01 6 13364901 13364901 C T GFOD1 3'UTR 0.40 TCGA-67-4679-01 6 152640091 152640091 C T SYNE1 Silent p.R5432R 0.07 TCGA-67-4679-01 6 15468781 15468781 G T JARID2 Missense_Mutation p.A168S 0.20 deleterious(0) probably_damaging(0.997) TCGA-67-4679-01 6 161519411 161519411 G T MAP3K4 Missense_Mutation p.G1209V 0.57 tolerated(0.23) possibly_damaging(0.887) TCGA-67-4679-01 6 167417200 167417200 G C FGFR1OP Intron 0.19 TCGA-67-4679-01 6 27115000 27115000 G A HIST1H2AH Silent p.V31V 0.29 TCGA-67-4679-01 6 30633459 30633459 G A DHX16 Nonsense_Mutation p.R240* 0.22 TCGA-67-4679-01 6 31901713 31901713 G T CFB Missense_Mutation p.G167V 0.36 deleterious(0.02) possibly_damaging(0.717) TCGA-67-4679-01 6 38775422 38775422 T A DNAH8 Missense_Mutation p.L846I 0.21 benign(0.009) TCGA-67-4679-01 6 39513404 39513404 A C KIF6 Silent p.V414V 0.20 TCGA-67-4679-01 6 40400281 40400281 C A LRFN2 Missense_Mutation p.G191V 0.23 deleterious(0) probably_damaging(1) TCGA-67-4679-01 6 43172512 43172512 C T CUL9 Missense_Mutation p.R1456W 0.14 tolerated(0.18) benign(0.001) TCGA-67-4679-01 6 55198657 55198657 T - GFRAL Frame_Shift_Del p.F78Sfs*16 0.28 TCGA-67-4679-01 6 6305670 6305670 C A F13A1 Missense_Mutation p.R78L 0.15 deleterious(0) probably_damaging(0.999) TCGA-67-4679-01 6 80912907 80912907 G C BCKDHB Missense_Mutation p.W310S 0.31 deleterious(0) probably_damaging(0.988) TCGA-67-4679-01 7 127253552 127253552 G T PAX4 Silent p.A191A 0.34 TCGA-67-4679-01 7 141352708 141352708 C G AGK Missense_Mutation p.T418R 0.39 tolerated_low_confidence(0.64) benign(0) TCGA-67-4679-01 7 141673320 141673320 A T TAS2R38 Missense_Mutation p.L57Q 0.38 deleterious(0) probably_damaging(1) TCGA-67-4679-01 7 146741138 146741138 G C CNTNAP2 Missense_Mutation p.C181S 0.41 deleterious(0) probably_damaging(0.927) TCGA-67-4679-01 7 150027823 150027823 T C ZBED6CL Silent p.I110I 0.32 TCGA-67-4679-01 7 150656702 150656702 C A KCNH2 Missense_Mutation p.D144Y 0.46 deleterious(0.02) benign(0.188) TCGA-67-4679-01 7 151711741 151711741 G A GALNTL5 Missense_Mutation p.G347R 0.37 deleterious(0) probably_damaging(0.99) TCGA-67-4679-01 7 152550643 152550643 G T ACTR3B Missense_Mutation p.G381V 0.29 deleterious(0) probably_damaging(0.999) TCGA-67-4679-01 7 5085978 5085978 G T RBAK 5'UTR 0.36 TCGA-67-4679-01 7 75894699 75894699 C T SRRM3 Missense_Mutation p.P248L 0.11 deleterious(0) unknown(0) TCGA-67-4679-01 8 110100469 110100469 C A TRHR Missense_Mutation p.T243K 0.36 tolerated(1) benign(0.001) TCGA-67-4679-01 8 117866674 117866674 A G RAD21 Missense_Mutation p.L324P 0.33 deleterious(0) probably_damaging(0.998) TCGA-67-4679-01 8 139163581 139163581 G T FAM135B Missense_Mutation p.S1046Y 0.31 deleterious(0) possibly_damaging(0.542) TCGA-67-4679-01 8 142154254 142154254 G T DENND3 Missense_Mutation p.A131S 0.50 tolerated(0.39) benign(0.102) TCGA-67-4679-01 8 22865272 22865272 C T RHOBTB2 Intron 0.29 TCGA-67-4679-01 8 27606050 27606050 T A CCDC25 Missense_Mutation p.M104L 0.35 deleterious(0.01) benign(0.139) TCGA-67-4679-01 8 3165998 3165998 G T CSMD1 Missense_Mutation p.P1220Q 0.39 probably_damaging(1) TCGA-67-4679-01 8 42586930 42586930 C T CHRNB3 Silent p.F160F 0.23 TCGA-67-4679-01 8 51621445 51621445 G T SNTG1 Splice_Site p.X398_splice 0.39 TCGA-67-4679-01 8 70536413 70536413 A T SULF1 Missense_Mutation p.T611S 0.31 tolerated(1) benign(0.004) TCGA-67-4679-01 8 77766816 77766816 C A ZFHX4 Silent p.G2553G 0.42 TCGA-67-4679-01 8 77768318 77768318 C A ZFHX4 Missense_Mutation p.T3054K 0.34 probably_damaging(0.952) TCGA-67-4679-01 8 87060875 87060875 G T PSKH2 Missense_Mutation p.A325E 0.36 deleterious(0.01) benign(0.072) TCGA-67-4679-01 8 89339469 89339469 C A MMP16 5'UTR 0.23 TCGA-67-4679-01 8 89339470 89339470 C G MMP16 5'UTR 0.23 TCGA-67-4679-01 8 91937844 91937844 C T NECAB1 Silent p.S192S 0.33 TCGA-67-4679-01 9 102722207 102722207 C G STX17 Missense_Mutation p.H142D 0.15 tolerated(0.2) benign(0.031) TCGA-67-4679-01 9 108536211 108536211 G A TMEM38B Nonsense_Mutation p.W242* 0.49 TCGA-67-4679-01 9 111617359 111617359 C A ACTL7B Silent p.P284P 0.30 TCGA-67-4679-01 9 113530298 113530298 G A MUSK Silent p.L373L 0.42 TCGA-67-4679-01 9 116931081 116931081 G T COL27A1 Missense_Mutation p.A416S 0.53 unknown(0) TCGA-67-4679-01 9 125437680 125437680 C A OR1L3 Missense_Mutation p.T91N 0.19 deleterious(0.03) benign(0.072) TCGA-67-4679-01 9 125437681 125437681 C T OR1L3 Silent p.T91T 0.20 TCGA-67-4679-01 9 127952042 127952042 G A PPP6C 5'UTR 0.58 TCGA-67-4679-01 9 130207312 130207313 TA - ZNF79 Frame_Shift_Del p.Y445* 0.36 TCGA-67-4679-01 9 130630179 130630179 G C AK1 3'UTR 0.23 TCGA-67-4679-01 9 131512987 131512987 T A ZER1 Missense_Mutation p.N423Y 0.49 deleterious(0.02) benign(0.049) TCGA-67-4679-01 9 133759670 133759670 G T ABL1 Missense_Mutation p.G684W 0.22 deleterious_low_confidence(0.01) benign(0.004) TCGA-67-4679-01 9 133759671 133759671 G T ABL1 Missense_Mutation p.G684V 0.22 deleterious_low_confidence(0.01) benign(0.075) TCGA-67-4679-01 9 133927929 133927929 C T LAMC3 Missense_Mutation p.T561I 0.22 tolerated(0.1) benign(0.25) TCGA-67-4679-01 9 134073346 134073346 G T NUP214 Missense_Mutation p.A1489S 0.23 benign(0.007) TCGA-67-4679-01 9 136028893 136028893 C A GBGT1 3'UTR 0.55 TCGA-67-4679-01 9 137623349 137623349 C T COL5A1 Missense_Mutation p.P391L 0.15 benign(0.041) TCGA-67-4679-01 9 14150231 14150231 G - NFIB Frame_Shift_Del p.P240Qfs*14 0.24 TCGA-67-4679-01 9 32570991 32570991 C A NDUFB6 Missense_Mutation p.W80C 0.23 deleterious(0) probably_damaging(1) TCGA-67-4679-01 9 32570992 32570992 C A NDUFB6 Missense_Mutation p.W80L 0.24 deleterious(0) probably_damaging(1) TCGA-67-4679-01 9 74360174 74360174 C A TMEM2 Missense_Mutation p.R265L 0.31 deleterious(0) probably_damaging(0.998) TCGA-67-4679-01 9 74526699 74526699 C T C9orf85 Nonsense_Mutation p.Q17* 0.26 TCGA-67-4679-01 9 89561033 89561033 T A GAS1 Missense_Mutation p.D221V 0.23 tolerated(0.16) possibly_damaging(0.542) TCGA-67-4679-01 9 90535696 90535696 C G SPATA31C1 RNA 0.25 TCGA-67-4679-01 X 101818963 101818963 C A NXF4 RNA 0.41 TCGA-67-4679-01 X 118109472 118109472 G T LONRF3 Silent p.A243A 0.44 TCGA-67-4679-01 X 135474497 135474497 A G GPR112 Missense_Mutation p.H2673R 0.44 deleterious(0) probably_damaging(0.98) TCGA-67-4679-01 X 1407713 1407713 C T CSF2RA Silent p.N135N 0.38 TCGA-67-4679-01 X 151814000 151814000 C A GABRQ Missense_Mutation p.P84H 0.34 tolerated(0.1) probably_damaging(0.989) TCGA-67-4679-01 X 1712605 1712605 G C AKAP17A Missense_Mutation p.E84Q 0.34 deleterious(0.02) probably_damaging(0.958) TCGA-67-4679-01 X 1748717 1748717 C A ASMT Silent p.S149S 0.28 TCGA-67-4679-01 X 26213296 26213296 G T MAGEB6 3'UTR 0.86 TCGA-67-4679-01 X 71359234 71359234 G T NHSL2 Silent p.S612S 0.62 TCGA-67-4679-01 X 85969642 85969642 C A DACH2 Missense_Mutation p.N341K 0.37 deleterious(0) probably_damaging(0.936) TCGA-67-6215-01 10 105944850 105944850 T G WDR96 Missense_Mutation p.M689L 0.04 tolerated(0.39) benign(0.002) TCGA-67-6215-01 10 255922 255922 A T ZMYND11 Silent p.T70T 0.32 TCGA-67-6215-01 10 46261127 46261127 G A FAM21C Missense_Mutation p.D580N 0.31 deleterious(0.03) possibly_damaging(0.888) TCGA-67-6215-01 10 72360376 72360376 A G PRF1 Missense_Mutation p.W95R 0.27 deleterious(0) probably_damaging(1) TCGA-67-6215-01 11 108236087 108236087 G A ATM Missense_Mutation p.R3008H 0.22 deleterious(0) probably_damaging(0.97) TCGA-67-6215-01 11 119996453 119996453 T G TRIM29 Missense_Mutation p.M427L 0.15 tolerated(0.21) benign(0.01) TCGA-67-6215-01 11 14512166 14512166 T G COPB1 Missense_Mutation p.E184A 0.05 deleterious(0) probably_damaging(0.973) TCGA-67-6215-01 11 51412305 51412305 G C OR4A5 Missense_Mutation p.L31V 0.30 tolerated_low_confidence(0.13) benign(0.109) TCGA-67-6215-01 11 64108420 64108420 T G CCDC88B Missense_Mutation p.L83R 0.20 tolerated(0.42) benign(0.001) TCGA-67-6215-01 11 812597 812597 T C RPLP2 Missense_Mutation p.S79P 0.20 tolerated(0.31) possibly_damaging(0.472) TCGA-67-6215-01 12 101723073 101723073 T G UTP20 Missense_Mutation p.V1088G 0.07 deleterious(0) possibly_damaging(0.796) TCGA-67-6215-01 12 104181289 104181289 A C NT5DC3 Missense_Mutation p.F373C 0.26 deleterious(0) probably_damaging(0.997) TCGA-67-6215-01 12 104336857 104336857 A T HSP90B1 Missense_Mutation p.E550D 0.26 deleterious(0.01) benign(0.394) TCGA-67-6215-01 12 105420361 105420361 A C ALDH1L2 Missense_Mutation p.F893C 0.23 deleterious(0) probably_damaging(1) TCGA-67-6215-01 12 22680702 22680702 G A C2CD5 Missense_Mutation p.A101V 0.29 tolerated(0.07) benign(0.306) TCGA-67-6215-01 12 301809 301809 A G SLC6A12 Silent p.T512T 0.26 TCGA-67-6215-01 12 53805023 53805023 G A SP1 Silent p.%3D 0.09 TCGA-67-6215-01 12 54674520 54674520 G A HNRNPA1 5'Flank 0.41 TCGA-67-6215-01 12 55846627 55846627 T G OR6C2 Silent p.V210V 0.23 TCGA-67-6215-01 12 75897801 75897801 A T KRR1 Missense_Mutation p.S238R 0.06 deleterious(0) possibly_damaging(0.695) TCGA-67-6215-01 13 25670991 25670991 A G PABPC3 Missense_Mutation p.S219G 0.05 deleterious(0) probably_damaging(0.999) TCGA-67-6215-01 13 27690659 27690659 T A USP12 Missense_Mutation p.L41F 0.33 tolerated(0.06) benign(0.167) TCGA-67-6215-01 13 33091950 33091950 T G N4BP2L2 Intron 0.07 TCGA-67-6215-01 13 47224374 47224374 T A LRCH1 Missense_Mutation p.L116M 0.23 deleterious(0) probably_damaging(0.986) TCGA-67-6215-01 14 101493500 101493500 T C MIR329-2 RNA 0.06 TCGA-67-6215-01 15 52011777 52011777 T G SCG3 3'UTR 0.14 TCGA-67-6215-01 15 52874472 52874472 A T FAM214A Missense_Mutation p.L1037H 0.40 deleterious(0) probably_damaging(1) TCGA-67-6215-01 15 58306126 58306126 T C ALDH1A2 Missense_Mutation p.D98G 0.33 deleterious(0) probably_damaging(1) TCGA-67-6215-01 15 65157638 65157638 T C PLEKHO2 Missense_Mutation p.S342P 0.08 tolerated(0.35) probably_damaging(0.998) TCGA-67-6215-01 16 16256971 16256971 C A ABCC6 Nonsense_Mutation p.E1129* 0.30 TCGA-67-6215-01 16 24800787 24800787 A C TNRC6A Missense_Mutation p.N275T 0.04 tolerated(0.08) benign(0.005) TCGA-67-6215-01 16 29999087 29999087 G T TAOK2 Missense_Mutation p.S1165I 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.462) TCGA-67-6215-01 16 50783950 50783950 A C CYLD Missense_Mutation p.K114T 0.06 tolerated(0.39) benign(0.034) TCGA-67-6215-01 16 88898418 88898418 G A GALNS Silent p.V330V 0.47 TCGA-67-6215-01 17 1369047 1369047 C T MYO1C Splice_Site p.X1056_splice 0.37 TCGA-67-6215-01 17 15938112 15938112 C G NCOR1 Missense_Mutation p.G2368R 0.04 possibly_damaging(0.665) TCGA-67-6215-01 17 16062117 16062117 T C NCOR1 Missense_Mutation p.Q230R 0.05 possibly_damaging(0.833) TCGA-67-6215-01 17 42744680 42744680 T G C17orf104 Silent p.S467S 0.24 TCGA-67-6215-01 17 42988815 42988815 G A GFAP Silent p.L306L 0.21 TCGA-67-6215-01 17 48941171 48941171 G A TOB1 Nonsense_Mutation p.Q70* 0.06 TCGA-67-6215-01 17 54517778 54517778 T C ANKFN1 Missense_Mutation p.L337P 0.04 deleterious(0) probably_damaging(1) TCGA-67-6215-01 17 59543207 59543207 A C TBX4 Missense_Mutation p.K103N 0.17 deleterious(0.05) benign(0.426) TCGA-67-6215-01 17 9828912 9828912 C T GAS7 Missense_Mutation p.R340Q 0.59 deleterious(0.03) benign(0.198) TCGA-67-6215-01 18 28979256 28979256 C T DSG4 Missense_Mutation p.P343S 0.30 tolerated(0.14) possibly_damaging(0.48) TCGA-67-6215-01 18 29340050 29340050 C T SLC25A52 Missense_Mutation p.G202D 0.12 tolerated(0.17) benign(0.361) TCGA-67-6215-01 18 32886980 32886980 T C ZNF271 RNA 0.06 TCGA-67-6215-01 18 43462310 43462310 T G EPG5 Missense_Mutation p.K1816T 0.36 tolerated(0.12) probably_damaging(0.969) TCGA-67-6215-01 18 43534828 43534828 T G EPG5 Missense_Mutation p.E180D 0.11 tolerated_low_confidence(0.36) benign(0.037) TCGA-67-6215-01 19 15739364 15739364 T G CYP4F8 RNA 0.12 TCGA-67-6215-01 19 1854696 1854696 A G KLF16 Missense_Mutation p.L174P 0.20 deleterious(0) probably_damaging(0.998) TCGA-67-6215-01 19 19338102 19338102 G A NCAN Missense_Mutation p.G558D 0.07 tolerated(0.08) probably_damaging(0.999) TCGA-67-6215-01 19 43576000 43576000 A G PSG2 Silent p.S272S 0.46 TCGA-67-6215-01 19 43576051 43576051 A C PSG2 Missense_Mutation p.D255E 0.56 tolerated(1) benign(0.003) TCGA-67-6215-01 19 49132515 49132515 T C SPHK2 Missense_Mutation p.S484P 0.08 tolerated(0.11) benign(0.01) TCGA-67-6215-01 19 54215570 54215570 A G MIR517A RNA 0.26 TCGA-67-6215-01 1 12835749 12835749 T C PRAMEF12 Silent p.S117S 0.08 TCGA-67-6215-01 1 152187828 152187828 T C HRNR Missense_Mutation p.S2093G 0.22 unknown(0) TCGA-67-6215-01 1 160124926 160124926 T G ATP1A4 Missense_Mutation p.F100C 0.18 deleterious(0) probably_damaging(0.999) TCGA-67-6215-01 1 160318908 160318908 A G NCSTN Missense_Mutation p.T104A 0.15 deleterious(0.02) benign(0.042) TCGA-67-6215-01 1 167023552 167023552 G A GPA33 3'UTR 0.08 TCGA-67-6215-01 1 169816858 169816858 A G C1orf112 Missense_Mutation p.K658E 0.04 tolerated(0.3) benign(0.031) TCGA-67-6215-01 1 170003573 170003573 C T KIFAP3 Missense_Mutation p.D228N 0.18 deleterious(0) possibly_damaging(0.532) TCGA-67-6215-01 1 207642160 207642160 C T CR2 Missense_Mutation p.S217F 0.19 deleterious(0) benign(0.183) TCGA-67-6215-01 1 227169734 227169734 A C ADCK3 Missense_Mutation p.K246T 0.08 tolerated(0.09) benign(0.017) TCGA-67-6215-01 1 236737633 236737633 T C HEATR1 Missense_Mutation p.I1110V 0.59 deleterious(0.03) benign(0.2) TCGA-67-6215-01 1 44461327 44461327 G A CCDC24 Missense_Mutation p.E203K 0.45 deleterious(0.02) probably_damaging(0.981) TCGA-67-6215-01 1 47548004 47548004 A C CYP4Z1 Splice_Site p.X122_splice 0.23 TCGA-67-6215-01 1 84415658 84415658 T C TTLL7 Missense_Mutation p.I57V 0.35 tolerated(0.48) benign(0.041) TCGA-67-6215-01 20 76828 76828 G T DEFB125 Missense_Mutation p.D81Y 0.31 deleterious(0.01) probably_damaging(0.953) TCGA-67-6215-01 21 32492740 32492740 A C TIAM1 Missense_Mutation p.I1574M 0.31 deleterious_low_confidence(0) possibly_damaging(0.794) TCGA-67-6215-01 21 43945903 43945903 T G SLC37A1 Missense_Mutation p.F25C 0.09 deleterious(0) probably_damaging(0.994) TCGA-67-6215-01 21 45540652 45540652 T C PWP2 Missense_Mutation p.L493P 0.26 deleterious(0) probably_damaging(1) TCGA-67-6215-01 22 18389374 18389374 A C MICAL3 Missense_Mutation p.L69V 0.32 possibly_damaging(0.562) TCGA-67-6215-01 22 20754938 20754938 A C ZNF74 Missense_Mutation p.K46T 0.25 tolerated(0.06) possibly_damaging(0.556) TCGA-67-6215-01 2 129025897 129025897 A G HS6ST1 Missense_Mutation p.Y359H 0.22 deleterious(0) probably_damaging(0.994) TCGA-67-6215-01 2 136581471 136581471 C T LCT Missense_Mutation p.A303T 0.23 deleterious(0.05) benign(0.232) TCGA-67-6215-01 2 162696373 162696373 T G SLC4A10 Missense_Mutation p.F118V 0.07 deleterious(0) probably_damaging(0.985) TCGA-67-6215-01 2 179572258 179572258 A C TTN Missense_Mutation p.I9679S 0.38 TCGA-67-6215-01 2 182403906 182403906 T G CERKL Missense_Mutation p.E510A 0.39 tolerated(0.23) benign(0.046) TCGA-67-6215-01 2 190719714 190719714 G A PMS1 Silent p.K572K 0.07 TCGA-67-6215-01 2 21233338 21233338 T G APOB Missense_Mutation p.Q2134H 0.11 possibly_damaging(0.594) TCGA-67-6215-01 2 219900304 219900305 - CCT CCDC108 In_Frame_Ins p.E146dup 0.39 TCGA-67-6215-01 2 220412409 220412409 G A TMEM198 Silent p.V116V 0.12 TCGA-67-6215-01 2 229890249 229890249 T G PID1 3'UTR 0.26 TCGA-67-6215-01 2 45778344 45778344 C T SRBD1 Missense_Mutation p.S532N 0.10 tolerated(0.3) benign(0.008) TCGA-67-6215-01 2 69330049 69330049 A C ANTXR1 Missense_Mutation p.K260T 0.32 tolerated(0.66) possibly_damaging(0.868) TCGA-67-6215-01 2 85570424 85570424 A C RETSAT Missense_Mutation p.L592V 0.32 tolerated(0.29) benign(0.071) TCGA-67-6215-01 2 90078305 90078305 C T IGKV3D-20 Silent p.S114S 0.25 TCGA-67-6215-01 3 129305021 129305021 T C PLXND1 Missense_Mutation p.E572G 0.40 deleterious(0.04) possibly_damaging(0.741) TCGA-67-6215-01 3 132360968 132360968 A C ACAD11 Missense_Mutation p.F129V 0.28 deleterious(0.03) possibly_damaging(0.893) TCGA-67-6215-01 3 148880568 148880568 T G HPS3 Missense_Mutation p.L795R 0.31 tolerated(0.07) probably_damaging(0.991) TCGA-67-6215-01 3 172224294 172224294 A C TNFSF10 Missense_Mutation p.F278L 0.05 deleterious(0) probably_damaging(1) TCGA-67-6215-01 3 19921190 19921190 T G EFHB Missense_Mutation p.E812A 0.25 deleterious(0.01) possibly_damaging(0.905) TCGA-67-6215-01 3 37365668 37365668 T C GOLGA4 Missense_Mutation p.L786P 0.06 probably_damaging(0.981) TCGA-67-6215-01 3 51978834 51978834 A T PARP3 Missense_Mutation p.Q188L 0.33 tolerated(0.57) benign(0.001) TCGA-67-6215-01 4 110606516 110606516 T G CCDC109B Missense_Mutation p.L309R 0.25 deleterious(0) possibly_damaging(0.829) TCGA-67-6215-01 4 177605128 177605128 T G VEGFC Missense_Mutation p.E404D 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-67-6215-01 4 39201143 39201143 A C WDR19 Missense_Mutation p.N151T 0.20 deleterious(0) possibly_damaging(0.887) TCGA-67-6215-01 4 56724547 56724547 C T EXOC1 Silent p.L20L 0.35 TCGA-67-6215-01 4 68506908 68506908 G A UBA6 Silent p.N505N 0.32 TCGA-67-6215-01 4 71665865 71665865 A C RUFY3 Missense_Mutation p.K522T 0.26 tolerated(0.44) benign(0.054) TCGA-67-6215-01 4 99337939 99337939 T C RAP1GDS1 Silent p.C270C 0.24 TCGA-67-6215-01 5 140209755 140209755 G A PCDHA6 Silent p.L693L 0.56 TCGA-67-6215-01 5 151784142 151784142 G A NMUR2 Missense_Mutation p.S178F 0.28 deleterious(0) probably_damaging(0.983) TCGA-67-6215-01 5 55422837 55422837 T G ANKRD55 Missense_Mutation p.I237L 0.26 tolerated(0.31) benign(0.069) TCGA-67-6215-01 5 74892214 74892214 A G POLK Missense_Mutation p.S566G 0.07 deleterious(0) probably_damaging(0.925) TCGA-67-6215-01 5 96253179 96253179 T G ERAP2 Missense_Mutation p.F918C 0.15 deleterious(0) probably_damaging(0.999) TCGA-67-6215-01 6 24651080 24651080 A G TDP2 Missense_Mutation p.L342P 0.29 deleterious(0) probably_damaging(0.998) TCGA-67-6215-01 6 27368305 27368305 A C ZNF391 Missense_Mutation p.E52D 0.34 tolerated(0.13) benign(0.003) TCGA-67-6215-01 6 28264604 28264604 G A PGBD1 Silent p.K218K 0.15 TCGA-67-6215-01 6 28264610 28264610 G A PGBD1 Silent p.E220E 0.14 TCGA-67-6215-01 6 28264697 28264697 G C PGBD1 Missense_Mutation p.E249D 0.16 deleterious_low_confidence(0.04) benign(0.003) TCGA-67-6215-01 6 28265725 28265725 G A PGBD1 Missense_Mutation p.E276K 0.14 tolerated_low_confidence(0.21) benign(0.006) TCGA-67-6215-01 6 28265744 28265744 G C PGBD1 Missense_Mutation p.G282A 0.20 tolerated_low_confidence(1) benign(0) TCGA-67-6215-01 6 42231109 42231109 G A TRERF1 Silent p.S611S 0.05 TCGA-67-6215-01 6 80723075 80723075 A C TTK Missense_Mutation p.N326H 0.08 tolerated(0.24) benign(0.001) TCGA-67-6215-01 7 100678181 100678181 T C MUC17 Silent p.L1162L 0.31 TCGA-67-6215-01 7 103202292 103202292 T G RELN Silent p.S1773S 0.33 TCGA-67-6215-01 7 104749673 104749673 A G KMT2E Silent p.Q1251Q 0.38 TCGA-67-6215-01 7 108137971 108137971 T G PNPLA8 Missense_Mutation p.K470T 0.16 deleterious(0) probably_damaging(0.965) TCGA-67-6215-01 7 149492740 149492740 T G SSPO RNA 0.35 TCGA-67-6215-01 8 103324705 103324705 T G UBR5 Missense_Mutation p.K672N 0.33 deleterious(0) probably_damaging(0.977) TCGA-67-6215-01 8 139662021 139662021 C G COL22A1 Missense_Mutation p.D1112H 0.36 unknown(0) TCGA-67-6215-01 8 15508234 15508234 G T TUSC3 Missense_Mutation p.A113S 0.29 deleterious(0.02) probably_damaging(0.915) TCGA-67-6215-01 8 17188790 17188790 A C MTMR7 Missense_Mutation p.L245R 0.42 deleterious(0) probably_damaging(0.998) TCGA-67-6215-01 8 20062036 20062036 T G ATP6V1B2 Missense_Mutation p.L60V 0.22 tolerated(0.59) benign(0.042) TCGA-67-6215-01 8 63973764 63973764 T C TTPA 3'UTR 0.11 TCGA-67-6215-01 8 68334688 68334688 A C CPA6 3'UTR 0.23 TCGA-67-6215-01 9 101594148 101594148 A C GALNT12 Missense_Mutation p.I276L 0.32 tolerated(0.17) possibly_damaging(0.633) TCGA-67-6215-01 9 107589437 107589437 A T ABCA1 Missense_Mutation p.L710Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-67-6215-01 9 132402830 132402830 G A ASB6 Silent p.L95L 0.38 TCGA-67-6215-01 9 139925457 139925457 G A FUT7 Missense_Mutation p.A245V 0.28 deleterious(0) possibly_damaging(0.87) TCGA-67-6215-01 9 140811791 140811791 T G CACNA1B Missense_Mutation p.F292V 0.17 tolerated(0.26) benign(0.038) TCGA-67-6215-01 X 129059058 129059058 C T UTP14A Missense_Mutation p.P546S 0.16 tolerated(0.24) benign(0.41) TCGA-67-6215-01 X 153209152 153209152 C A RENBP Missense_Mutation p.R103L 0.29 deleterious(0.01) benign(0.32) TCGA-67-6215-01 X 39921444 39921444 T C BCOR Missense_Mutation p.N1459S 0.33 deleterious(0) possibly_damaging(0.644) TCGA-67-6215-01 X 57935082 57935082 G T ZXDA Silent p.T591T 0.23 TCGA-67-6215-01 X 76872168 76872168 A G ATRX Silent p.L1827L 0.06 TCGA-67-6216-01 10 64000899 64000899 A G RTKN2 Splice_Site p.X124_splice 0.07 TCGA-67-6216-01 10 97776014 97776017 TTTC - CC2D2B Frame_Shift_Del p.F157Cfs*16 0.11 TCGA-67-6216-01 11 3704561 3704561 G A NUP98 Missense_Mutation p.A1596V 0.23 tolerated(0.18) possibly_damaging(0.648) TCGA-67-6216-01 11 63990575 63990575 C T FERMT3 Missense_Mutation p.R580C 0.09 deleterious(0) probably_damaging(0.997) TCGA-67-6216-01 11 679720 679720 G A DEAF1 Missense_Mutation p.P365L 0.12 deleterious(0) probably_damaging(0.999) TCGA-67-6216-01 12 109698333 109698333 T - ACACB Frame_Shift_Del p.R2183Dfs*8 0.25 TCGA-67-6216-01 12 57128024 57128024 T A PRIM1 Nonsense_Mutation p.K384* 0.19 TCGA-67-6216-01 14 103574737 103574737 C G EXOC3L4 Missense_Mutation p.S620C 0.08 deleterious(0) probably_damaging(0.992) TCGA-67-6216-01 14 20925518 20925520 ATG - APEX1 In_Frame_Del p.M271del 0.30 TCGA-67-6216-01 14 96134693 96134693 C G TCL6 Intron 0.09 TCGA-67-6216-01 15 59801128 59801128 C G FAM81A Missense_Mutation p.H204D 0.05 tolerated(0.11) benign(0.055) TCGA-67-6216-01 15 64717779 64717779 G T TRIP4 Silent p.L508L 0.24 TCGA-67-6216-01 16 2258828 2258828 C T MLST8 Missense_Mutation p.H311Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-67-6216-01 16 48145805 48145805 T A ABCC12 Missense_Mutation p.D669V 0.34 deleterious(0) probably_damaging(0.966) TCGA-67-6216-01 17 1675167 1675167 G A SERPINF1 Silent p.K147K 0.50 TCGA-67-6216-01 17 33749738 33749738 G C SLFN12 Missense_Mutation p.L104V 0.08 deleterious(0.03) possibly_damaging(0.609) TCGA-67-6216-01 17 42483347 42483348 - T GPATCH8 Frame_Shift_Ins p.Q189Tfs*10 0.15 TCGA-67-6216-01 17 44594493 44594493 G C LRRC37A2 Intron 0.06 TCGA-67-6216-01 17 48452594 48452594 T C EME1 Missense_Mutation p.S9P 0.05 tolerated(0.24) unknown(0) TCGA-67-6216-01 19 40581559 40581559 G A ZNF780A Missense_Mutation p.L265F 0.22 deleterious(0.04) possibly_damaging(0.906) TCGA-67-6216-01 19 54074859 54074859 G A ZNF331 Missense_Mutation p.G4D 0.08 tolerated(0.24) probably_damaging(0.992) TCGA-67-6216-01 19 803570 803570 G A PTBP1 Missense_Mutation p.D17N 0.08 deleterious(0.01) benign(0.016) TCGA-67-6216-01 19 9066642 9066642 G A MUC16 Missense_Mutation p.S6935F 0.24 unknown(0) TCGA-67-6216-01 1 151271344 151271344 T C PI4KB Missense_Mutation p.N664S 0.08 deleterious(0.01) benign(0.331) TCGA-67-6216-01 1 161816357 161816357 A - ATF6 Frame_Shift_Del p.N437Tfs*15 0.22 TCGA-67-6216-01 1 216419957 216419957 G A USH2A Nonsense_Mutation p.Q927* 0.04 TCGA-67-6216-01 1 31351412 31351412 G C SDC3 Intron 0.11 TCGA-67-6216-01 1 9787172 9787172 T C PIK3CD 3'UTR 0.20 TCGA-67-6216-01 20 16717952 16717952 G T SNRPB2 Missense_Mutation p.R95L 0.10 deleterious(0.02) benign(0.043) TCGA-67-6216-01 21 38593890 38593890 C T DSCR3 3'Flank 0.06 TCGA-67-6216-01 22 27012195 27012195 C T CRYBB1 Missense_Mutation p.G30E 0.06 tolerated(0.09) possibly_damaging(0.784) TCGA-67-6216-01 2 217363591 217363591 C T RPL37A 5'UTR 0.07 TCGA-67-6216-01 2 227886814 227886814 C T COL4A4 Missense_Mutation p.G1389E 0.03 unknown(0) TCGA-67-6216-01 3 44540772 44540772 C A ZNF852 Missense_Mutation p.L499F 0.30 tolerated_low_confidence(0.67) benign(0.007) TCGA-67-6216-01 3 47103747 47103747 T A SETD2 Nonsense_Mutation p.K2067* 0.28 TCGA-67-6216-01 3 49095083 49095083 C A QRICH1 Nonsense_Mutation p.E184* 0.07 TCGA-67-6216-01 4 57189582 57189582 C G KIAA1211 Missense_Mutation p.S1076C 0.08 deleterious(0) possibly_damaging(0.843) TCGA-67-6216-01 5 54711811 54711811 G C SKIV2L2 Missense_Mutation p.R941T 0.05 tolerated(0.07) probably_damaging(0.944) TCGA-67-6216-01 5 60241110 60241110 G A NDUFAF2 Missense_Mutation p.A10T 0.14 tolerated(0.22) benign(0.005) TCGA-67-6216-01 5 74646703 74646703 A G HMGCR Silent p.S290S 0.06 TCGA-67-6216-01 6 146266576 146266576 T A SHPRH Missense_Mutation p.T507S 0.07 tolerated_low_confidence(1) benign(0.047) TCGA-67-6216-01 6 153043209 153043209 C T MYCT1 Missense_Mutation p.P177S 0.16 tolerated(0.16) probably_damaging(0.928) TCGA-67-6216-01 6 42666008 42666008 C T PRPH2 3'UTR 0.21 TCGA-67-6216-01 7 86526912 86526912 G T KIAA1324L Missense_Mutation p.F865L 0.10 deleterious(0) probably_damaging(0.981) TCGA-67-6216-01 7 86998766 86998766 G A CROT Missense_Mutation p.E236K 0.07 deleterious(0.03) benign(0.049) TCGA-67-6216-01 8 105509340 105509340 G A LRP12 Silent p.S480S 0.05 TCGA-67-6216-01 9 732583 732583 G A KANK1 Missense_Mutation p.E1071K 0.05 tolerated(0.17) benign(0.017) TCGA-67-6216-01 9 90220046 90220046 C T DAPK1 Silent p.H80H 0.26 TCGA-67-6216-01 X 110961491 110961491 A G ALG13 Silent p.S413S 0.18 TCGA-67-6216-01 X 74644506 74644506 G C ZDHHC15 Missense_Mutation p.S239R 0.12 tolerated(0.29) benign(0.439) TCGA-67-6217-01 10 101814132 101814132 G T CPN1 Silent p.V361V 0.17 TCGA-67-6217-01 10 106125670 106125670 G T CCDC147 Missense_Mutation p.M232I 0.20 tolerated(0.15) benign(0.006) TCGA-67-6217-01 10 118383478 118383478 A T PNLIPRP2 Missense_Mutation p.Q24H 0.25 tolerated(0.16) benign(0.001) TCGA-67-6217-01 10 15646211 15646211 T C ITGA8 Missense_Mutation p.N705S 0.17 tolerated(0.35) benign(0.014) TCGA-67-6217-01 10 33137562 33137562 C T C10ORF68 Missense_Mutation p.R514C 0.11 deleterious(0.02) possibly_damaging(0.555) TCGA-67-6217-01 10 51562320 51562320 A T MSMB Nonsense_Mutation p.K89* 0.14 TCGA-67-6217-01 10 7423846 7423846 C A SFMBT2 Missense_Mutation p.L5F 0.21 tolerated_low_confidence(0.72) benign(0.001) TCGA-67-6217-01 10 91469165 91469165 C T KIF20B Missense_Mutation p.R100W 0.09 deleterious(0) probably_damaging(0.998) TCGA-67-6217-01 11 102595604 102595604 C G MMP8 5'UTR 0.08 TCGA-67-6217-01 11 111425981 111425981 A C LAYN Missense_Mutation p.E216D 0.10 tolerated(0.39) benign(0.098) TCGA-67-6217-01 11 118922237 118922237 T C HYOU1 Missense_Mutation p.K480R 0.29 deleterious(0) probably_damaging(0.971) TCGA-67-6217-01 11 120690598 120690598 C T GRIK4 Silent p.T160T 0.04 TCGA-67-6217-01 11 21594952 21594952 C A NELL1 Nonsense_Mutation p.C793* 0.22 TCGA-67-6217-01 11 4929304 4929304 G T OR51A7 Missense_Mutation p.K235N 0.21 deleterious(0) possibly_damaging(0.539) TCGA-67-6217-01 11 55541680 55541680 C A OR5D13 Missense_Mutation p.T256N 0.17 deleterious(0) possibly_damaging(0.883) TCGA-67-6217-01 11 5565818 5565818 T A OR52H1 Silent p.I312I 0.24 TCGA-67-6217-01 11 56020310 56020310 C A OR5T3 Missense_Mutation p.P212H 0.31 deleterious(0) probably_damaging(0.992) TCGA-67-6217-01 11 56086612 56086612 A T OR8K3 Missense_Mutation p.Y277F 0.32 deleterious_low_confidence(0.01) probably_damaging(0.932) TCGA-67-6217-01 11 56258623 56258623 T C OR5M8 Missense_Mutation p.N75S 0.34 tolerated(0.39) benign(0.005) TCGA-67-6217-01 11 59211538 59211538 G T OR5A1 Missense_Mutation p.E299D 0.33 tolerated(0.15) benign(0.044) TCGA-67-6217-01 11 77728273 77728273 G C KCTD14 Missense_Mutation p.T45S 0.35 tolerated(0.09) probably_damaging(0.951) TCGA-67-6217-01 11 88780748 88780748 G T GRM5 Missense_Mutation p.S98Y 0.47 deleterious(0) probably_damaging(1) TCGA-67-6217-01 11 94532826 94532826 G A AMOTL1 Missense_Mutation p.R157H 0.23 deleterious(0) probably_damaging(0.996) TCGA-67-6217-01 12 114837318 114837318 C T TBX5 Nonsense_Mutation p.W121* 0.15 TCGA-67-6217-01 12 330154 330154 G T SLC6A13 Missense_Mutation p.T590N 0.17 tolerated(0.55) benign(0.031) TCGA-67-6217-01 12 38714267 38714267 G T ALG10B Missense_Mutation p.G225V 0.15 tolerated(0.35) benign(0.018) TCGA-67-6217-01 12 4459026 4459026 T G C12orf5 Missense_Mutation p.D78E 0.11 tolerated(0.2) benign(0.128) TCGA-67-6217-01 12 4459029 4459029 G T C12orf5 Missense_Mutation p.M79I 0.11 tolerated(0.36) benign(0.006) TCGA-67-6217-01 12 46243560 46243560 G T ARID2 Splice_Site p.X638_splice 0.10 TCGA-67-6217-01 12 52825359 52825359 C T KRT75 Missense_Mutation p.E280K 0.08 deleterious(0.01) probably_damaging(0.954) TCGA-67-6217-01 12 53072009 53072009 T C KRT1 Splice_Site p.X269_splice 0.25 TCGA-67-6217-01 12 59272706 59272706 G T LRIG3 Missense_Mutation p.F661L 0.10 tolerated(0.13) probably_damaging(0.914) TCGA-67-6217-01 12 78582552 78582552 T A NAV3 Missense_Mutation p.L1995H 0.24 deleterious(0) probably_damaging(0.998) TCGA-67-6217-01 12 8687174 8687174 G A CLEC4E 3'UTR 0.26 TCGA-67-6217-01 12 91502379 91502379 G C LUM Missense_Mutation p.N126K 0.20 deleterious(0) probably_damaging(1) TCGA-67-6217-01 13 23904263 23904263 C A SACS 3'UTR 0.33 TCGA-67-6217-01 13 31719733 31719733 C A HSPH1 Silent p.L517L 0.10 TCGA-67-6217-01 13 33634951 33634951 C A KL Missense_Mutation p.Q579K 0.37 tolerated(0.64) benign(0.003) TCGA-67-6217-01 13 38237641 38237641 G T TRPC4 Missense_Mutation p.L534I 0.05 deleterious(0.01) probably_damaging(0.923) TCGA-67-6217-01 13 39546705 39546705 C A STOML3 Missense_Mutation p.D86Y 0.28 deleterious(0) probably_damaging(0.989) TCGA-67-6217-01 13 67801796 67801796 C G PCDH9 Silent p.V259V 0.08 TCGA-67-6217-01 13 86369625 86369625 G T SLITRK6 Missense_Mutation p.P340Q 0.31 tolerated(0.55) benign(0.008) TCGA-67-6217-01 13 86369626 86369626 G T SLITRK6 Missense_Mutation p.P340T 0.31 tolerated(0.56) benign(0.055) TCGA-67-6217-01 14 105412058 105412058 G T AHNAK2 Missense_Mutation p.P3244T 0.26 probably_damaging(0.996) TCGA-67-6217-01 14 19377684 19377684 G T OR11H12 Missense_Mutation p.G31C 0.12 deleterious(0) probably_damaging(0.997) TCGA-67-6217-01 14 30100003 30100003 G A PRKD1 Silent p.A539A 0.06 TCGA-67-6217-01 14 38266096 38266096 G A TTC6 Missense_Mutation p.E1325K 0.07 tolerated(0.4) probably_damaging(0.912) TCGA-67-6217-01 14 38266098 38266098 G A TTC6 Silent p.E1325E 0.07 TCGA-67-6217-01 14 74989609 74989610 - TT LTBP2 Nonsense_Mutation p.C848* 0.27 TCGA-67-6217-01 15 45444641 45444641 C T DUOX1 Silent p.L1117L 0.12 TCGA-67-6217-01 15 45661562 45661562 C A GATM Missense_Mutation p.W149L 0.20 tolerated(0.15) benign(0.11) TCGA-67-6217-01 15 50271825 50271825 G A ATP8B4 Silent p.S341S 0.07 TCGA-67-6217-01 15 62226466 62226466 A C VPS13C Missense_Mutation p.F1940L 0.09 deleterious(0.03) benign(0.029) TCGA-67-6217-01 15 85411371 85411371 C T ALPK3 Missense_Mutation p.P1803L 0.12 deleterious(0.04) probably_damaging(1) TCGA-67-6217-01 16 1272752 1272752 G T TPSG1 Silent p.L137L 0.22 TCGA-67-6217-01 16 1604799 1604799 C A TMEM204 Silent p.I151I 0.33 TCGA-67-6217-01 16 28354495 28354495 T C NPIPB6 Silent p.A237A 0.05 TCGA-67-6217-01 16 30522454 30522454 A T ITGAL Missense_Mutation p.Q928L 0.22 tolerated(0.07) benign(0.007) TCGA-67-6217-01 17 10429087 10429087 C G MYH2 Missense_Mutation p.E1432Q 0.44 deleterious(0) probably_damaging(0.92) TCGA-67-6217-01 17 38818199 38818199 A T KRT222 Missense_Mutation p.L65Q 0.35 deleterious(0) probably_damaging(0.988) TCGA-67-6217-01 17 39658805 39658806 - A KRT13 Frame_Shift_Ins p.Y356Lfs*25 0.09 TCGA-67-6217-01 17 41594634 41594634 A G DHX8 Missense_Mutation p.T915A 0.09 deleterious(0.02) benign(0.347) TCGA-67-6217-01 17 42635330 42635330 C T FZD2 Silent p.L92L 0.07 TCGA-67-6217-01 17 56389902 56389902 C A BZRAP1 Silent p.V760V 0.26 TCGA-67-6217-01 17 66339822 66339822 G A ARSG Missense_Mutation p.R99H 0.09 deleterious(0) probably_damaging(1) TCGA-67-6217-01 17 7221815 7221815 T C NEURL4 Missense_Mutation p.Q1288R 0.19 tolerated(0.11) benign(0.105) TCGA-67-6217-01 17 73261910 73261910 C T MRPS7 Missense_Mutation p.A212V 0.24 deleterious(0) probably_damaging(1) TCGA-67-6217-01 17 79287682 79287682 C A TMEM105 Missense_Mutation p.R53S 0.35 tolerated_low_confidence(0.31) benign(0.002) TCGA-67-6217-01 18 21898723 21898723 C G OSBPL1A Missense_Mutation p.V226L 0.27 tolerated(0.7) benign(0) TCGA-67-6217-01 18 55024510 55024510 G C ST8SIA3 Missense_Mutation p.L223F 0.20 benign(0.207) TCGA-67-6217-01 18 74154250 74154250 C A ZNF516 Missense_Mutation p.G254V 0.44 deleterious(0) probably_damaging(1) TCGA-67-6217-01 19 10677830 10677830 C G CDKN2D Missense_Mutation p.R135S 0.09 deleterious(0.04) benign(0.007) TCGA-67-6217-01 19 19612093 19612093 C - GATAD2A Frame_Shift_Del p.R457Gfs*2 0.23 TCGA-67-6217-01 19 2099076 2099076 G A IZUMO4 Intron 0.32 TCGA-67-6217-01 19 2114283 2114283 C T AP3D1 Silent p.E814E 0.25 TCGA-67-6217-01 19 2115314 2115314 C T AP3D1 Silent p.K751K 0.22 TCGA-67-6217-01 19 2115341 2115341 C T AP3D1 Silent p.R742R 0.14 TCGA-67-6217-01 19 2115379 2115379 C T AP3D1 Missense_Mutation p.E730K 0.18 tolerated(0.18) benign(0.054) TCGA-67-6217-01 19 2115386 2115386 C T AP3D1 Silent p.L727L 0.19 TCGA-67-6217-01 19 2120872 2120872 C T AP3D1 Silent p.G490G 0.13 TCGA-67-6217-01 19 23318843 23318843 C A ZNF730 Missense_Mutation p.P75Q 0.25 deleterious(0) probably_damaging(0.988) TCGA-67-6217-01 19 35642229 35642261 TCAGTAAGTGCGACCCATTCCTGGGCTGCCTCA GCAGTACGT FXYD7 Splice_Site p.X45_splice 0.08 TCGA-67-6217-01 19 39915029 39915029 G C PLEKHG2 Missense_Mutation p.D1086H 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.826) TCGA-67-6217-01 19 40434113 40434113 G T FCGBP Nonsense_Mutation p.Y52* 0.24 TCGA-67-6217-01 19 44635941 44635941 C T ZNF225 Nonsense_Mutation p.R392* 0.09 TCGA-67-6217-01 19 53995018 53995018 C T ZNF813 Missense_Mutation p.A511V 0.07 tolerated(0.47) benign(0.008) TCGA-67-6217-01 19 55221511 55221511 C A AC098784.2 3'Flank 0.31 TCGA-67-6217-01 19 55281289 55281289 G T KIR2DL1 5'UTR 0.22 TCGA-67-6217-01 19 58196753 58196753 G T ZNF551 Missense_Mutation p.G69C 0.11 deleterious(0.01) probably_damaging(1) TCGA-67-6217-01 19 58472789 58472789 C T C19orf18 Missense_Mutation p.E168K 0.05 deleterious(0) possibly_damaging(0.81) TCGA-67-6217-01 19 9046894 9046894 A G MUC16 Silent p.T11579T 0.08 TCGA-67-6217-01 19 9063968 9063968 A C MUC16 Silent p.A7826A 0.12 TCGA-67-6217-01 1 104114354 104114354 G T AMY2B Nonsense_Mutation p.E44* 0.24 TCGA-67-6217-01 1 114308968 114308986 ATTTCTAGGGATGAAGTAG - RSBN1 Frame_Shift_Del p.I675Mfs*15 0.25 TCGA-67-6217-01 1 152276335 152276335 G T FLG Missense_Mutation p.T3676K 0.17 unknown(0) TCGA-67-6217-01 1 153591462 153591462 G C S100A13 Missense_Mutation p.S69W 0.04 deleterious(0.01) possibly_damaging(0.813) TCGA-67-6217-01 1 153790562 153790562 C A GATAD2B Missense_Mutation p.R228L 0.19 deleterious(0.01) benign(0.049) TCGA-67-6217-01 1 153998192 153998192 C A NUP210L Missense_Mutation p.R1316S 0.05 deleterious(0.01) possibly_damaging(0.493) TCGA-67-6217-01 1 158656297 158656297 A G SPTA1 Missense_Mutation p.F4S 0.04 tolerated_low_confidence(0.2) benign(0.001) TCGA-67-6217-01 1 161655008 161655008 G T RPL31P11 RNA 0.20 TCGA-67-6217-01 1 167404576 167404576 G T CD247 Intron 0.45 TCGA-67-6217-01 1 169100659 169100659 G T ATP1B1 Missense_Mutation p.A260S 0.05 deleterious(0.02) probably_damaging(0.986) TCGA-67-6217-01 1 178421741 178421741 C G RASAL2 Missense_Mutation p.L655V 0.04 deleterious(0) probably_damaging(0.988) TCGA-67-6217-01 1 179660116 179660116 G T TDRD5 3'UTR 0.41 TCGA-67-6217-01 1 181726250 181726250 G T CACNA1E Silent p.L1439L 0.12 TCGA-67-6217-01 1 205035635 205035635 G A CNTN2 Nonsense_Mutation p.W628* 0.40 TCGA-67-6217-01 1 205588203 205588203 T A ELK4 Splice_Site p.X361_splice 0.44 TCGA-67-6217-01 1 207741262 207741262 C A CR1 Missense_Mutation p.T1349K 0.30 tolerated(0.12) possibly_damaging(0.629) TCGA-67-6217-01 1 211192451 211192451 G T KCNH1 Missense_Mutation p.P236T 0.42 deleterious(0) probably_damaging(1) TCGA-67-6217-01 1 216108066 216108066 G A USH2A Missense_Mutation p.L2398F 0.43 benign(0.024) TCGA-67-6217-01 1 221053723 221053723 A G HLX Missense_Mutation p.K175R 0.17 deleterious(0) probably_damaging(0.999) TCGA-67-6217-01 1 248366562 248366562 C A OR2M3 Missense_Mutation p.Q65K 0.18 deleterious(0) probably_damaging(0.971) TCGA-67-6217-01 1 248756148 248756148 G T OR2T10 Missense_Mutation p.Q308K 0.68 tolerated(0.92) benign(0.002) TCGA-67-6217-01 1 32198202 32198202 C T BAI2 Silent p.V1212V 0.14 TCGA-67-6217-01 1 33402700 33402700 G T RNF19B Missense_Mutation p.P636T 0.10 tolerated_low_confidence(0.59) benign(0) TCGA-67-6217-01 1 52442781 52442781 T C RAB3B Silent p.S3S 0.25 TCGA-67-6217-01 1 6188908 6188908 G A CHD5 Silent p.D1203D 0.35 TCGA-67-6217-01 1 68620819 68620819 T C WLS Missense_Mutation p.N208S 0.30 deleterious(0) possibly_damaging(0.854) TCGA-67-6217-01 1 75805301 75805301 A T SLC44A5 Missense_Mutation p.Y23N 0.34 deleterious(0) possibly_damaging(0.804) TCGA-67-6217-01 1 77093235 77093235 C T ST6GALNAC3 Missense_Mutation p.T241I 0.20 probably_damaging(0.943) TCGA-67-6217-01 1 89732742 89732742 C A GBP5 Missense_Mutation p.D175Y 0.24 deleterious(0) probably_damaging(0.985) TCGA-67-6217-01 20 44682317 44682317 G A SLC12A5 Missense_Mutation p.R906H 0.07 deleterious(0.01) benign(0.077) TCGA-67-6217-01 20 47630484 47630484 A T ARFGEF2 Missense_Mutation p.E1389V 0.15 deleterious(0) possibly_damaging(0.615) TCGA-67-6217-01 20 51871354 51871354 T A TSHZ2 Missense_Mutation p.C453S 0.24 tolerated(1) benign(0) TCGA-67-6217-01 20 52193560 52193560 A G ZNF217 Silent p.S581S 0.34 TCGA-67-6217-01 20 5294904 5294904 C T PROKR2 Missense_Mutation p.D38N 0.15 tolerated(0.3) benign(0.003) TCGA-67-6217-01 20 55012553 55012553 C A CASS4 Missense_Mutation p.Q124K 0.19 tolerated(0.15) benign(0.039) TCGA-67-6217-01 20 57613683 57613683 C A SLMO2 Silent p.P13P 0.19 TCGA-67-6217-01 21 10941911 10941911 G T TPTE Silent p.I264I 0.15 TCGA-67-6217-01 21 11097584 11097584 C A BAGE2 RNA 0.06 TCGA-67-6217-01 21 28327084 28327084 G T ADAMTS5 Missense_Mutation p.A404E 0.17 deleterious(0) possibly_damaging(0.862) TCGA-67-6217-01 21 31654799 31654799 C G KRTAP24-1 Missense_Mutation p.C151S 0.34 tolerated(0.38) benign(0.078) TCGA-67-6217-01 21 46012274 46012274 G T KRTAP10-6 Missense_Mutation p.S31Y 0.11 deleterious(0.01) unknown(0) TCGA-67-6217-01 21 46604837 46604837 G C ADARB1 Splice_Site p.X506_splice 0.08 TCGA-67-6217-01 2 105859504 105859504 C A GPR45 3'UTR 0.43 TCGA-67-6217-01 2 125530567 125530567 C A CNTNAP5 Missense_Mutation p.L908M 0.31 deleterious(0) probably_damaging(0.982) TCGA-67-6217-01 2 133543111 133543111 C T NCKAP5 Missense_Mutation p.G425S 0.05 deleterious(0.02) probably_damaging(0.999) TCGA-67-6217-01 2 163066498 163066498 C T FAP Silent p.E337E 0.12 TCGA-67-6217-01 2 173435514 173435514 G A PDK1 Missense_Mutation p.V303I 0.29 tolerated(0.09) benign(0.405) TCGA-67-6217-01 2 196825586 196825586 C A DNAH7 Missense_Mutation p.L763F 0.05 tolerated(0.06) probably_damaging(0.997) TCGA-67-6217-01 2 209049756 209049756 C A C2orf80 Missense_Mutation p.L14F 0.12 deleterious(0.01) benign(0.035) TCGA-67-6217-01 2 209049757 209049757 C A C2orf80 Splice_Site p.X14_splice 0.12 TCGA-67-6217-01 2 213872367 213872367 C A IKZF2 Missense_Mutation p.S433I 0.08 tolerated(0.16) possibly_damaging(0.665) TCGA-67-6217-01 2 242149890 242149890 G A ANO7 Missense_Mutation p.R543H 0.09 tolerated(0.57) benign(0.087) TCGA-67-6217-01 2 71629097 71629097 A C ZNF638 Missense_Mutation p.E903D 0.08 tolerated(0.95) benign(0.275) TCGA-67-6217-01 2 74690184 74690184 C T MOGS Intron 0.08 TCGA-67-6217-01 2 88828809 88828809 G T TEX37 Missense_Mutation p.Q120H 0.25 tolerated_low_confidence(0.3) benign(0.066) TCGA-67-6217-01 2 88828903 88828903 C A TEX37 Missense_Mutation p.L152I 0.32 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-67-6217-01 3 120998798 120998798 T - STXBP5L Frame_Shift_Del p.I702Mfs*17 0.23 TCGA-67-6217-01 3 121356023 121356023 C G HCLS1 Missense_Mutation p.G179R 0.35 deleterious(0) unknown(0) TCGA-67-6217-01 3 121413585 121413585 C A GOLGB1 Nonsense_Mutation p.E1929* 0.30 TCGA-67-6217-01 3 124377365 124377365 G A KALRN Splice_Site p.X132_splice 0.19 TCGA-67-6217-01 3 133525539 133525539 T G SRPRB Missense_Mutation p.F81V 0.06 deleterious(0) probably_damaging(0.998) TCGA-67-6217-01 3 137742593 137742593 G A CLDN18 Missense_Mutation p.R105H 0.29 tolerated(0.11) probably_damaging(0.987) TCGA-67-6217-01 3 158261251 158261251 A G RSRC1 Missense_Mutation p.D296G 0.19 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-67-6217-01 3 168840508 168840508 T C MECOM Missense_Mutation p.K156E 0.07 tolerated(0.2) benign(0.253) TCGA-67-6217-01 3 183397003 183397003 A G KLHL24 Missense_Mutation p.M578V 0.31 deleterious(0) possibly_damaging(0.771) TCGA-67-6217-01 3 38770309 38770309 C G SCN10A Silent p.G788G 0.09 TCGA-67-6217-01 3 48630019 48630019 G T COL7A1 Missense_Mutation p.S320R 0.22 unknown(0) TCGA-67-6217-01 3 93593234 93593234 G A PROS1 Missense_Mutation p.A629V 0.08 deleterious(0.05) benign(0.17) TCGA-67-6217-01 4 102839313 102839313 C T BANK1 Silent p.H391H 0.08 TCGA-67-6217-01 4 104512654 104512654 G T TACR3 Missense_Mutation p.L359M 0.23 tolerated(0.11) probably_damaging(0.981) TCGA-67-6217-01 4 108868619 108868619 C A CYP2U1 Missense_Mutation p.A405D 0.30 deleterious(0) probably_damaging(1) TCGA-67-6217-01 4 138453244 138453244 G T PCDH18 5'UTR 0.17 TCGA-67-6217-01 4 183675836 183675836 C T TENM3 Missense_Mutation p.S1439F 0.18 tolerated(0.17) benign(0.01) TCGA-67-6217-01 4 69978338 69978338 G A UGT2B7 Missense_Mutation p.D492N 0.10 deleterious(0) probably_damaging(0.995) TCGA-67-6217-01 5 11384993 11384993 C T CTNND2 Missense_Mutation p.V321M 0.19 tolerated(0.06) possibly_damaging(0.742) TCGA-67-6217-01 5 127599195 127599195 G T FBN2 Missense_Mutation p.P2705H 0.12 deleterious(0) benign(0.036) TCGA-67-6217-01 5 140222229 140222229 G A PCDHA8 Silent p.L441L 0.06 TCGA-67-6217-01 5 140529991 140529991 G A PCDHB6 Silent p.L51L 0.20 TCGA-67-6217-01 5 140536921 140536921 G A PCDHB17 Missense_Mutation p.A449T 0.05 deleterious_low_confidence(0.02) possibly_damaging(0.705) TCGA-67-6217-01 5 140537453 140537453 G A PCDHB17 3'UTR 0.06 TCGA-67-6217-01 5 140573077 140573077 A T PCDHB10 Missense_Mutation p.N318Y 0.04 tolerated_low_confidence(0.05) benign(0.018) TCGA-67-6217-01 5 150943179 150943179 G T FAT2 Missense_Mutation p.P1094H 0.08 possibly_damaging(0.841) TCGA-67-6217-01 5 156907854 156907854 G T ADAM19 3'UTR 0.36 TCGA-67-6217-01 5 158223455 158223455 C T EBF1 Silent p.P269P 0.06 TCGA-67-6217-01 5 21975427 21975427 G A CDH12 Missense_Mutation p.T100I 0.27 tolerated(0.08) benign(0.282) TCGA-67-6217-01 5 59893540 59893540 A G DEPDC1B 3'UTR 0.35 TCGA-67-6217-01 5 68467140 68467140 C A CCNB1 Missense_Mutation p.A136D 0.07 tolerated(0.11) benign(0.025) TCGA-67-6217-01 5 79030937 79030937 G C CMYA5 Missense_Mutation p.D2117H 0.28 benign(0.445) TCGA-67-6217-01 5 81460256 81460256 T G ATG10 Missense_Mutation p.I85M 0.37 tolerated(0.19) benign(0.002) TCGA-67-6217-01 6 152804280 152804280 G T SYNE1 Silent p.T430T 0.44 TCGA-67-6217-01 6 28542849 28542849 G T SCAND3 Missense_Mutation p.H545N 0.09 tolerated_low_confidence(0.99) benign(0) TCGA-67-6217-01 6 3006783 3006783 C T NQO2 5'UTR 0.17 TCGA-67-6217-01 6 31779552 31779552 C T HSPA1L Silent p.Q66Q 0.57 TCGA-67-6217-01 6 32184793 32184793 G T NOTCH4 Missense_Mutation p.P597Q 0.49 deleterious(0) probably_damaging(1) TCGA-67-6217-01 6 32184794 32184794 G T NOTCH4 Missense_Mutation p.P597T 0.48 deleterious(0.03) probably_damaging(1) TCGA-67-6217-01 6 35755685 35755685 C A CLPSL1 Missense_Mutation p.N88K 0.35 deleterious(0.04) probably_damaging(0.913) TCGA-67-6217-01 6 37250728 37250728 G A TBC1D22B Silent p.S224S 0.29 TCGA-67-6217-01 6 37626189 37626189 A G MDGA1 Missense_Mutation p.W72R 0.17 deleterious(0) possibly_damaging(0.876) TCGA-67-6217-01 6 5000118 5000118 C A RPP40 Missense_Mutation p.D120Y 0.44 deleterious(0) probably_damaging(0.968) TCGA-67-6217-01 6 87726029 87726029 C A HTR1E Missense_Mutation p.A326D 0.42 tolerated(0.14) possibly_damaging(0.606) TCGA-67-6217-01 6 90556331 90556331 G T CASP8AP2 RNA 0.40 TCGA-67-6217-01 6 90660894 90660894 G A BACH2 Missense_Mutation p.R311W 0.12 tolerated(0.18) benign(0.394) TCGA-67-6217-01 6 94066483 94066483 G T EPHA7 Silent p.R426R 0.49 TCGA-67-6217-01 7 100682069 100682069 T A MUC17 Missense_Mutation p.L2458I 0.13 probably_damaging(0.989) TCGA-67-6217-01 7 107708591 107708591 G C LAMB4 Missense_Mutation p.H772Q 0.44 deleterious(0.02) probably_damaging(0.971) TCGA-67-6217-01 7 112423771 112423771 C A TMEM168 Missense_Mutation p.L370F 0.34 tolerated(0.06) probably_damaging(0.982) TCGA-67-6217-01 7 128851599 128851599 G T SMO Missense_Mutation p.V642L 0.28 tolerated(0.06) benign(0.112) TCGA-67-6217-01 7 134254279 134254279 A G AKR1B15 Missense_Mutation p.K145E 0.25 deleterious(0.03) benign(0.017) TCGA-67-6217-01 7 142583208 142583208 C T TRPV6 Silent p.K18K 0.10 TCGA-67-6217-01 7 150711207 150711207 G A NOS3 Missense_Mutation p.A1188T 0.09 tolerated_low_confidence(0.12) possibly_damaging(0.554) TCGA-67-6217-01 7 151873473 151873473 G A KMT2C Missense_Mutation p.T3022I 0.22 benign(0.258) TCGA-67-6217-01 7 36763656 36763656 G T AOAH Missense_Mutation p.P33H 0.35 tolerated(0.12) benign(0.081) TCGA-67-6217-01 7 38424409 38424409 A T AMPH 3'UTR 0.33 TCGA-67-6217-01 7 3991446 3991446 C T SDK1 Silent p.T348T 0.07 TCGA-67-6217-01 7 48413973 48413973 A T ABCA13 Missense_Mutation p.Q3721H 0.15 probably_damaging(0.956) TCGA-67-6217-01 7 55259515 55259515 T G EGFR Missense_Mutation p.L858R 0.15 deleterious(0) probably_damaging(1) TCGA-67-6217-01 8 116631634 116631634 C A TRPS1 Nonsense_Mutation p.E231* 0.34 TCGA-67-6217-01 8 144557623 144557623 G A ZC3H3 Silent p.L616L 0.11 TCGA-67-6217-01 8 144991017 144991017 G A PLEC Silent p.P4461P 0.12 TCGA-67-6217-01 8 2823383 2823383 G T CSMD1 Missense_Mutation p.P3065Q 0.71 probably_damaging(1) TCGA-67-6217-01 9 109746587 109746587 A T ZNF462 Missense_Mutation p.H2318L 0.12 probably_damaging(0.998) TCGA-67-6217-01 9 137704300 137704300 G T COL5A1 Missense_Mutation p.L1232F 0.11 unknown(0) TCGA-67-6217-01 9 138590880 138590880 G T SOHLH1 Missense_Mutation p.S53Y 0.30 deleterious(0.02) benign(0.278) TCGA-67-6217-01 9 18622297 18622297 C A ADAMTSL1 Silent p.V177V 0.35 TCGA-67-6217-01 9 42368331 42368331 C A ANKRD20A2 5'UTR 0.44 TCGA-67-6217-01 9 84608465 84608465 G T SPATA31D1 Missense_Mutation p.R1027I 0.31 tolerated(0.19) possibly_damaging(0.782) TCGA-67-6217-01 9 90502272 90502272 G T SPATA31E1 Missense_Mutation p.G957V 0.32 tolerated(0.31) benign(0.003) TCGA-67-6217-01 9 96859891 96859891 A G PTPDC1 Missense_Mutation p.K346R 0.19 tolerated(0.37) benign(0.008) TCGA-67-6217-01 9 97054749 97054749 G T ZNF169 Nonsense_Mutation p.G54* 0.15 TCGA-67-6217-01 X 110366401 110366401 G A PAK3 Missense_Mutation p.D24N 0.52 tolerated(0.12) possibly_damaging(0.575) TCGA-67-6217-01 X 115304043 115304043 G A AGTR2 Missense_Mutation p.M170I 0.06 tolerated(0.1) benign(0.013) TCGA-67-6217-01 X 118284535 118284535 G A KIAA1210 Missense_Mutation p.A3V 0.31 tolerated_low_confidence(0.06) benign(0.047) TCGA-67-6217-01 X 119496040 119496040 G A ATP1B4 Missense_Mutation p.R6Q 0.06 deleterious_low_confidence(0) benign(0.012) TCGA-67-6217-01 X 129063425 129063425 C G UTP14A Silent p.P719P 0.17 TCGA-67-6217-01 X 135570341 135570341 C T BRS3 Missense_Mutation p.S23L 0.05 tolerated(0.24) benign(0.008) TCGA-67-6217-01 X 135592353 135592353 C G HTATSF1 Missense_Mutation p.A346G 0.21 tolerated(0.1) benign(0.199) TCGA-67-6217-01 X 140994659 140994659 C A MAGEC1 Missense_Mutation p.T490N 0.17 deleterious_low_confidence(0) benign(0.403) TCGA-67-6217-01 X 141291003 141291003 C G MAGEC2 Silent p.G257G 0.25 TCGA-67-6217-01 X 144905670 144905670 C T SLITRK2 Missense_Mutation p.A576V 0.37 tolerated(0.67) benign(0.001) TCGA-67-6217-01 X 144909297 144909297 A G TMEM257 Silent p.L34L 0.27 TCGA-67-6217-01 X 149828153 149828153 A T MTM1 Missense_Mutation p.D426V 0.07 deleterious(0.01) probably_damaging(0.91) TCGA-67-6217-01 X 153678637 153678637 C T FAM50A Silent p.Y327Y 0.09 TCGA-67-6217-01 X 15544216 15544219 TGAG - BMX Splice_Site p.X295_splice 0.08 TCGA-67-6217-01 X 17818511 17818511 A C RAI2 3'UTR 0.11 TCGA-67-6217-01 X 3007540 3007540 C A ARSF Missense_Mutation p.H278Q 0.20 deleterious(0) possibly_damaging(0.752) TCGA-67-6217-01 X 49029519 49029519 C A PLP2 Missense_Mutation p.P47Q 0.20 tolerated(0.45) benign(0.011) TCGA-67-6217-01 X 55479280 55479280 A C MAGEH1 Missense_Mutation p.E158A 0.09 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-67-6217-01 X 55479393 55479393 G A MAGEH1 Missense_Mutation p.D196N 0.11 tolerated_low_confidence(0.17) benign(0.064) TCGA-67-6217-01 X 82763714 82763714 G T POU3F4 Missense_Mutation p.G128C 0.48 deleterious(0) possibly_damaging(0.597) TCGA-69-7760-01 10 8007192 8007192 G T TAF3 Missense_Mutation p.K573N 0.07 deleterious_low_confidence(0) benign(0.19) TCGA-69-7760-01 11 101868365 101868365 C A KIAA1377 Missense_Mutation p.D1115E 0.28 tolerated_low_confidence(0.44) benign(0) TCGA-69-7760-01 11 124873844 124873844 G T CCDC15 Missense_Mutation p.D766Y 0.19 deleterious(0) probably_damaging(0.976) TCGA-69-7760-01 11 125788530 125788530 G A DDX25 Missense_Mutation p.R349Q 0.42 tolerated(0.17) benign(0.001) TCGA-69-7760-01 11 46685646 46685646 G A ATG13 Splice_Site p.X296_splice 0.22 TCGA-69-7760-01 11 55606597 55606597 C A OR5D16 Missense_Mutation p.H124N 0.26 deleterious(0) benign(0.039) TCGA-69-7760-01 12 109972426 109972426 C T UBE3B Missense_Mutation p.R1016W 0.20 deleterious(0) probably_damaging(0.988) TCGA-69-7760-01 12 21531424 21531424 G T IAPP 3'UTR 0.27 TCGA-69-7760-01 12 30881636 30881636 G A CAPRIN2 Silent p.S576S 0.57 TCGA-69-7760-01 12 66531832 66531832 C T TMBIM4 Missense_Mutation p.E209K 0.08 deleterious(0) probably_damaging(0.911) TCGA-69-7760-01 12 77436892 77436892 C A E2F7 Missense_Mutation p.R359L 0.09 deleterious(0) probably_damaging(1) TCGA-69-7760-01 12 93155572 93155572 T A PLEKHG7 Missense_Mutation p.F249I 0.40 deleterious(0.02) benign(0.065) TCGA-69-7760-01 12 95486540 95486542 ACA - FGD6 In_Frame_Del p.M1227_C1228delinsS 0.26 TCGA-69-7760-01 15 31362264 31362264 G A TRPM1 Silent p.F100F 0.02 TCGA-69-7760-01 15 40703778 40703778 A G IVD Missense_Mutation p.N195S 0.63 tolerated(0.32) benign(0.001) TCGA-69-7760-01 15 45660357 45660357 A G GATM Missense_Mutation p.Y196H 0.51 deleterious(0) probably_damaging(0.994) TCGA-69-7760-01 16 71570803 71570803 G T CHST4 Missense_Mutation p.A75S 0.21 deleterious(0.03) probably_damaging(0.991) TCGA-69-7760-01 16 83994336 83994336 G T OSGIN1 Missense_Mutation p.G123C 0.12 deleterious(0) probably_damaging(0.998) TCGA-69-7760-01 16 83998759 83998759 C G OSGIN1 Missense_Mutation p.S194C 0.17 tolerated(0.35) benign(0.022) TCGA-69-7760-01 16 90102839 90102839 G T GAS8 Missense_Mutation p.D201Y 0.05 deleterious(0) probably_damaging(0.936) TCGA-69-7760-01 17 34062322 34062322 G A RASL10B Missense_Mutation p.R40H 0.39 tolerated(0.31) possibly_damaging(0.811) TCGA-69-7760-01 17 7577130 7577130 A C TP53 Missense_Mutation p.F270V 0.50 deleterious(0) probably_damaging(0.995) TCGA-69-7760-01 17 80041455 80041455 A G FASN Missense_Mutation p.L1760S 0.40 deleterious(0) probably_damaging(0.999) TCGA-69-7760-01 19 1095337 1095337 G A POLR2E 5'UTR 0.22 TCGA-69-7760-01 19 31039823 31039823 C G ZNF536 Missense_Mutation p.H1099Q 0.67 tolerated_low_confidence(0.06) benign(0.003) TCGA-69-7760-01 19 758028 758028 G A MISP Missense_Mutation p.R361H 0.25 deleterious(0) probably_damaging(0.999) TCGA-69-7760-01 19 7831630 7831630 C A CLEC4M Missense_Mutation p.D291E 0.22 tolerated(0.06) benign(0.056) TCGA-69-7760-01 1 152648696 152648696 G A LCE2C Missense_Mutation p.G69S 0.06 tolerated_low_confidence(0.09) unknown(0) TCGA-69-7760-01 1 159166676 159166676 G C CADM3 Intron 0.10 TCGA-69-7760-01 1 163298697 163298697 A C NUF2 Missense_Mutation p.K113Q 0.09 deleterious(0) possibly_damaging(0.649) TCGA-69-7760-01 1 201778380 201778380 C T NAV1 Silent p.I1432I 0.33 TCGA-69-7760-01 1 211526711 211526711 A T TRAF5 Nonsense_Mutation p.K44* 0.14 TCGA-69-7760-01 1 228290021 228290021 G C C1orf35 Missense_Mutation p.S146C 0.14 deleterious(0) possibly_damaging(0.815) TCGA-69-7760-01 1 237753108 237753108 G A RYR2 Missense_Mutation p.C1205Y 0.08 benign(0.403) TCGA-69-7760-01 1 2435767 2435767 C T PLCH2 3'UTR 0.34 TCGA-69-7760-01 1 247655175 247655175 T A OR2W5 RNA 0.30 TCGA-69-7760-01 1 32696570 32696570 G C EIF3I Missense_Mutation p.K282N 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-69-7760-01 1 77510125 77510125 C T ST6GALNAC5 Silent p.T166T 0.26 TCGA-69-7760-01 21 11026764 11026764 A C BAGE2 RNA 0.15 TCGA-69-7760-01 21 43803247 43803247 G A TMPRSS3 Missense_Mutation p.S226L 0.19 deleterious(0.02) benign(0.006) TCGA-69-7760-01 21 44479397 44479397 C T CBS Missense_Mutation p.D388N 0.35 deleterious(0.01) benign(0.036) TCGA-69-7760-01 22 38150893 38150911 CCCTCGCTCACCACCACCT - TRIOBP Frame_Shift_Del p.P1797Lfs*12 0.25 TCGA-69-7760-01 22 38150920 38150920 C T TRIOBP Nonsense_Mutation p.Q1806* 0.19 TCGA-69-7760-01 2 107040265 107040265 C T RGPD3 Silent p.Q1386Q 0.11 TCGA-69-7760-01 2 131981170 131981170 A G POTEE Missense_Mutation p.T175A 0.21 deleterious_low_confidence(0) possibly_damaging(0.523) TCGA-69-7760-01 2 177191598 177191598 T A MTX2 Missense_Mutation p.L85H 0.05 deleterious(0) probably_damaging(0.977) TCGA-69-7760-01 2 179484783 179484783 A T TTN Missense_Mutation p.L15454Q 0.21 TCGA-69-7760-01 2 219677417 219677417 C T CYP27A1 Silent p.P263P 0.12 TCGA-69-7760-01 2 236626271 236626271 A T AGAP1 Missense_Mutation p.Q98L 0.38 tolerated(0.07) possibly_damaging(0.903) TCGA-69-7760-01 2 61726958 61726958 G A XPO1 Silent p.S160S 0.23 TCGA-69-7760-01 2 96551852 96551854 TTC - ANKRD36C In_Frame_Del p.K63del 0.17 TCGA-69-7760-01 3 10491052 10491052 C T ATP2B2 Missense_Mutation p.R59H 0.10 deleterious(0.04) benign(0.009) TCGA-69-7760-01 3 122964752 122964752 A G SEC22A Missense_Mutation p.Q183R 0.33 tolerated(0.37) benign(0.005) TCGA-69-7760-01 3 137942330 137942330 C T ARMC8 Silent p.V84V 0.13 TCGA-69-7760-01 3 142116274 142116274 G A XRN1 Nonsense_Mutation p.Q746* 0.17 TCGA-69-7760-01 3 15473685 15473685 A G EAF1 Missense_Mutation p.Y97C 0.41 tolerated(0.19) benign(0.012) TCGA-69-7760-01 3 160155919 160155919 G A TRIM59 Silent p.H351H 0.38 TCGA-69-7760-01 3 179478937 179478937 C G USP13 Silent p.A662A 0.07 TCGA-69-7760-01 3 184009886 184009886 G A ECE2 Missense_Mutation p.E838K 0.17 tolerated(0.2) possibly_damaging(0.849) TCGA-69-7760-01 3 192516439 192516439 G A MB21D2 Silent p.R404R 0.11 TCGA-69-7760-01 3 192516440 192516440 C T MB21D2 Missense_Mutation p.R404H 0.11 deleterious(0) probably_damaging(1) TCGA-69-7760-01 3 193182868 193182868 G A ATP13A4 Missense_Mutation p.A441V 0.49 tolerated(0.1) probably_damaging(1) TCGA-69-7760-01 3 47164506 47164507 TC - SETD2 Frame_Shift_Del p.R540Pfs*7 0.37 TCGA-69-7760-01 3 50330014 50330014 C T IFRD2 5'Flank 0.14 TCGA-69-7760-01 3 51671500 51671500 C T RAD54L2 Silent p.L555L 0.44 TCGA-69-7760-01 3 68055862 68055862 C A FAM19A1 Missense_Mutation p.F31L 0.34 tolerated(0.66) benign(0) TCGA-69-7760-01 4 36149176 36149176 C A ARAP2 Nonsense_Mutation p.E1065* 0.31 TCGA-69-7760-01 4 72634047 72634047 C T GC Missense_Mutation p.G97R 0.11 deleterious(0) possibly_damaging(0.775) TCGA-69-7760-01 5 140475890 140475890 G T PCDHB2 Missense_Mutation p.V506F 0.12 deleterious_low_confidence(0) possibly_damaging(0.461) TCGA-69-7760-01 5 140572437 140572437 G T PCDHB10 Silent p.L104L 0.18 TCGA-69-7760-01 5 154306962 154306962 T C GEMIN5 Missense_Mutation p.T355A 0.22 deleterious(0.04) benign(0.066) TCGA-69-7760-01 5 7757636 7757636 G A ADCY2 Nonsense_Mutation p.W677* 0.26 TCGA-69-7760-01 5 9063108 9063108 G A SEMA5A Silent p.G803G 0.16 TCGA-69-7760-01 6 117199104 117199104 C A RFX6 Silent p.L123L 0.21 TCGA-69-7760-01 6 26376849 26376849 C G BTN3A2 3'UTR 0.13 TCGA-69-7760-01 6 28333829 28333829 G T ZKSCAN3 Missense_Mutation p.A462S 0.34 tolerated(0.24) benign(0.003) TCGA-69-7760-01 6 44222572 44222572 G T SLC35B2 Silent p.V390V 0.13 TCGA-69-7760-01 7 11486888 11486888 A G THSD7A Silent p.G923G 0.24 TCGA-69-7760-01 7 21730401 21730401 A G DNAH11 Silent p.E1988E 0.14 TCGA-69-7760-01 7 44102401 44102401 C T PGAM2 Missense_Mutation p.A242T 0.21 deleterious(0.01) probably_damaging(0.991) TCGA-69-7760-01 7 55241679 55241681 AAC - EGFR In_Frame_Del p.E709_T710delinsD 0.51 TCGA-69-7760-01 7 5922210 5922210 T G OCM Missense_Mutation p.F50V 0.05 tolerated(0.32) benign(0) TCGA-69-7760-01 7 83591024 83591024 A G SEMA3A Missense_Mutation p.L660P 0.80 deleterious(0) probably_damaging(0.959) TCGA-69-7760-01 7 99002494 99002494 C T PDAP1 Silent p.Q32Q 0.18 TCGA-69-7760-01 8 3245155 3245155 G A CSMD1 Silent p.N881N 0.60 TCGA-69-7760-01 8 42262390 42262390 A G VDAC3 Silent p.K237K 0.21 TCGA-69-7760-01 8 81733777 81733777 A T ZNF704 Missense_Mutation p.M18K 0.11 tolerated_low_confidence(0.08) benign(0.007) TCGA-69-7760-01 8 99102050 99102050 G A C8orf47 Missense_Mutation p.E269K 0.08 tolerated(0.05) benign(0.014) TCGA-69-7760-01 9 100190916 100190916 C - TDRD7 Frame_Shift_Del p.P57Qfs*6 0.21 TCGA-69-7760-01 9 135266209 135266209 C T TTF1 Missense_Mutation p.R666H 0.30 tolerated(1) benign(0.032) TCGA-69-7760-01 9 136313805 136313805 T C ADAMTS13 Silent p.P939P 0.32 TCGA-69-7760-01 9 35045640 35045640 C A C9orf131 Missense_Mutation p.P1005H 0.19 deleterious(0.02) benign(0.437) TCGA-69-7760-01 X 11206861 11206861 C T ARHGAP6 Missense_Mutation p.R355Q 0.17 deleterious(0.05) probably_damaging(0.986) TCGA-69-7760-01 X 148664887 148664887 G A MAGEA9B 5'UTR 0.35 TCGA-69-7761-01 10 31810592 31810592 C G ZEB1 Missense_Mutation p.P778A 0.17 tolerated(1) benign(0.029) TCGA-69-7761-01 11 134158730 134158730 G A GLB1L3 Silent p.E225E 0.16 TCGA-69-7761-01 12 102315025 102315025 A G DRAM1 Missense_Mutation p.N235S 0.15 tolerated(0.23) benign(0.003) TCGA-69-7761-01 12 21918633 21918636 GACT - KCNJ8 3'UTR 0.09 TCGA-69-7761-01 12 5154827 5154827 T C KCNA5 Missense_Mutation p.V505A 0.11 deleterious(0) benign(0.036) TCGA-69-7761-01 12 68619484 68619484 A T IL26 Missense_Mutation p.L18H 0.21 deleterious(0) probably_damaging(0.947) TCGA-69-7761-01 12 85449409 85449409 T - LRRIQ1 Frame_Shift_Del p.L280* 0.17 TCGA-69-7761-01 14 31644125 31644125 C A HECTD1 Missense_Mutation p.D199Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-69-7761-01 18 47911673 47911673 T A SKA1 Missense_Mutation p.S133R 0.12 tolerated(0.35) benign(0.02) TCGA-69-7761-01 19 17660359 17660359 G T FAM129C Intron 0.13 TCGA-69-7761-01 19 43258606 43258606 T A PSG8 Silent p.L374L 0.09 TCGA-69-7761-01 1 156243215 156243215 C A SMG5 Missense_Mutation p.V191L 0.14 tolerated(0.58) benign(0.378) TCGA-69-7761-01 1 167400875 167400875 G A CD247 3'UTR 0.11 TCGA-69-7761-01 20 20600000 20600000 A C RALGAPA2 Missense_Mutation p.F487C 0.18 deleterious(0) probably_damaging(0.94) TCGA-69-7761-01 20 62839705 62839705 G A MYT1 Missense_Mutation p.A386T 0.24 probably_damaging(0.999) TCGA-69-7761-01 21 35147397 35147397 A G ITSN1 Silent p.L527L 0.12 TCGA-69-7761-01 21 45220445 45220445 C T RRP1 Silent p.R313R 0.13 TCGA-69-7761-01 22 20760303 20760303 C T ZNF74 Missense_Mutation p.T327M 0.14 deleterious(0) probably_damaging(0.998) TCGA-69-7761-01 2 170557787 170557787 G T PHOSPHO2 Silent p.S102S 0.25 TCGA-69-7761-01 2 179592542 179592542 T A TTN Missense_Mutation p.D6588V 0.28 TCGA-69-7761-01 2 219137330 219137330 C T PNKD Intron 0.08 TCGA-69-7761-01 2 8822342 8822342 C T ID2 Missense_Mutation p.S16L 0.12 deleterious(0.03) benign(0.267) TCGA-69-7761-01 3 38798590 38798590 G C SCN10A Silent p.T337T 0.18 TCGA-69-7761-01 3 48454284 48454284 C G PLXNB1 Missense_Mutation p.R1574T 0.09 deleterious(0) probably_damaging(0.969) TCGA-69-7761-01 3 52730605 52730609 CCAAA - GLT8D1 Frame_Shift_Del p.L133Rfs*8 0.17 TCGA-69-7761-01 3 77611877 77611877 G T ROBO2 Missense_Mutation p.V521L 0.17 deleterious(0.02) benign(0.299) TCGA-69-7761-01 4 113356393 113356393 A T ALPK1 Nonsense_Mutation p.K1042* 0.09 TCGA-69-7761-01 4 48622705 48622705 C A FRYL Nonsense_Mutation p.E89* 0.08 TCGA-69-7761-01 5 177034353 177034353 G T B4GALT7 Missense_Mutation p.S155I 0.12 tolerated(0.08) benign(0.098) TCGA-69-7761-01 5 79733547 79733547 G C ZFYVE16 Missense_Mutation p.S348T 0.28 tolerated(0.17) benign(0.001) TCGA-69-7761-01 6 116879383 116879383 C A FAM26D 3'UTR 0.24 TCGA-69-7761-01 6 74497176 74497176 G T CD109 Splice_Site p.X852_splice 0.26 TCGA-69-7761-01 7 82763935 82763935 T G PCLO Missense_Mutation p.Q977H 0.21 unknown(0) TCGA-69-7761-01 8 144406735 144406735 C T TOP1MT Missense_Mutation p.V246I 0.05 deleterious(0) probably_damaging(0.983) TCGA-69-7761-01 8 17611606 17611606 T - MTUS1 Frame_Shift_Del p.I571Lfs*38 0.16 TCGA-69-7761-01 8 26441458 26441458 A G DPYSL2 Missense_Mutation p.Q91R 0.18 tolerated(0.09) benign(0.274) TCGA-69-7761-01 8 68140474 68140474 C A ARFGEF1 Missense_Mutation p.D1136Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-69-7761-01 X 47518284 47518284 C A UXT Nonsense_Mutation p.E27* 0.13 TCGA-69-7761-01 X 62944546 62944546 G A ARHGEF9 Missense_Mutation p.H19Y 0.06 deleterious(0) probably_damaging(0.971) TCGA-69-7761-01 X 70775057 70775057 T A OGT Missense_Mutation p.L249H 0.14 tolerated(0.13) probably_damaging(0.997) TCGA-69-7763-01 10 48371096 48371096 C T ZNF488 Silent p.A188A 0.12 TCGA-69-7763-01 10 68686209 68686209 C A LRRTM3 5'UTR 0.17 TCGA-69-7763-01 10 73051404 73051404 G T UNC5B Missense_Mutation p.G504W 0.23 deleterious(0) probably_damaging(0.949) TCGA-69-7763-01 10 74899220 74899220 A G ECD Missense_Mutation p.L456P 0.21 deleterious(0) probably_damaging(1) TCGA-69-7763-01 10 99400513 99400513 G A PI4K2A Missense_Mutation p.S5N 0.12 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-69-7763-01 11 128638032 128638032 A G FLI1 Missense_Mutation p.S84G 0.28 tolerated(0.1) possibly_damaging(0.828) TCGA-69-7763-01 11 129062008 129062011 CAGT - ARHGAP32 Frame_Shift_Del p.D28Vfs*13 0.15 TCGA-69-7763-01 11 14666460 14666460 G A PDE3B Missense_Mutation p.S280N 0.23 tolerated(0.16) benign(0.303) TCGA-69-7763-01 11 17757663 17757663 G A KCNC1 Silent p.A38A 0.17 TCGA-69-7763-01 11 44165857 44165857 C G EXT2 Intron 0.24 TCGA-69-7763-01 11 71949338 71949338 G T INPPL1 Missense_Mutation p.G1240W 0.18 deleterious(0) unknown(0) TCGA-69-7763-01 11 74676882 74676882 C T SPCS2 Silent p.S91S 0.12 TCGA-69-7763-01 11 82972966 82972966 C G CCDC90B Missense_Mutation p.R251T 0.05 deleterious(0) possibly_damaging(0.744) TCGA-69-7763-01 12 123186690 123186690 T C HCAR2 3'UTR 0.14 TCGA-69-7763-01 12 124403278 124403278 G A DNAH10 Missense_Mutation p.R3645Q 0.23 probably_damaging(0.95) TCGA-69-7763-01 12 51457744 51457744 A C CSRNP2 Missense_Mutation p.S473A 0.22 tolerated_low_confidence(0.44) benign(0) TCGA-69-7763-01 12 57605790 57605790 C T LRP1 Nonsense_Mutation p.R4447* 0.09 TCGA-69-7763-01 12 89992384 89992384 G A ATP2B1 Intron 0.16 TCGA-69-7763-01 13 103528149 103528149 G A ERCC5 Missense_Mutation p.D1153N 0.39 deleterious(0.03) benign(0.11) TCGA-69-7763-01 13 23909353 23909353 C T SACS Missense_Mutation p.A2888T 0.17 probably_damaging(0.995) TCGA-69-7763-01 13 25487104 25487104 C G CENPJ Missense_Mutation p.W20C 0.14 deleterious(0) probably_damaging(0.999) TCGA-69-7763-01 13 52509127 52509127 G A ATP7B Missense_Mutation p.A1388V 0.21 deleterious(0.05) benign(0.067) TCGA-69-7763-01 13 84454780 84454780 G T SLITRK1 Missense_Mutation p.T288N 0.19 tolerated(0.11) benign(0.016) TCGA-69-7763-01 14 23235884 23235884 G A OXA1L Missense_Mutation p.A52T 0.10 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-69-7763-01 14 23902380 23902380 T A MYH7 Missense_Mutation p.K86N 0.20 deleterious(0.04) probably_damaging(0.928) TCGA-69-7763-01 14 24798353 24798353 G A ADCY4 Missense_Mutation p.R480C 0.13 deleterious(0) probably_damaging(0.986) TCGA-69-7763-01 14 65417809 65417809 C A RAB15 Missense_Mutation p.V103F 0.05 tolerated(0.06) possibly_damaging(0.74) TCGA-69-7763-01 14 73138002 73138002 C T DPF3 Missense_Mutation p.A306T 0.09 tolerated(0.14) benign(0.002) TCGA-69-7763-01 15 22383265 22383265 T A OR4N4 Missense_Mutation p.L265I 0.08 deleterious(0.01) benign(0.41) TCGA-69-7763-01 15 42003214 42003220 CATTTTA - MGA Frame_Shift_Del p.I918Hfs*13 0.12 TCGA-69-7763-01 15 77907402 77907402 C T LINGO1 Missense_Mutation p.V283I 0.05 tolerated(0.16) benign(0.001) TCGA-69-7763-01 17 1538814 1538814 C T SCARF1 Silent p.P577P 0.19 TCGA-69-7763-01 17 20805603 20805603 G A RP11-344E13.3 RNA 0.11 TCGA-69-7763-01 17 27049543 27049543 A G RPL23A Intron 0.24 TCGA-69-7763-01 17 41569551 41569551 A T DHX8 Missense_Mutation p.T132S 0.23 tolerated(0.74) unknown(0) TCGA-69-7763-01 17 42476905 42476905 C A GPATCH8 Missense_Mutation p.S847I 0.30 deleterious_low_confidence(0) unknown(0) TCGA-69-7763-01 17 54428148 54428148 G A ANKFN1 Silent p.T73T 0.18 TCGA-69-7763-01 17 6982172 6982172 G A CLEC10A 5'UTR 0.29 TCGA-69-7763-01 17 8076901 8076901 G A TMEM107 3'Flank 0.17 TCGA-69-7763-01 18 33734899 33734899 C T ELP2 Silent p.I469I 0.14 TCGA-69-7763-01 18 641426 641426 G A CLUL1 Missense_Mutation p.R365Q 0.11 tolerated(1) benign(0.001) TCGA-69-7763-01 19 1207090 1207091 - A STK11 Nonsense_Mutation p.Y60* 0.25 TCGA-69-7763-01 19 23545333 23545333 G A ZNF91 Nonsense_Mutation p.Q150* 0.26 TCGA-69-7763-01 19 36884215 36884215 A G ZFP82 Missense_Mutation p.C343R 0.09 deleterious(0) probably_damaging(1) TCGA-69-7763-01 19 38979989 38979989 A G RYR1 Missense_Mutation p.E1907G 0.28 benign(0.026) TCGA-69-7763-01 19 44891618 44891618 G A ZNF285 Silent p.D263D 0.28 TCGA-69-7763-01 19 45797646 45797647 - A MARK4 Nonsense_Mutation p.Y512* 0.11 TCGA-69-7763-01 19 51994907 51994907 G A SIGLEC12 Silent p.N592N 0.21 TCGA-69-7763-01 19 52447726 52447726 C A ZNF613 Missense_Mutation p.T197N 0.20 deleterious(0.01) possibly_damaging(0.518) TCGA-69-7763-01 19 8564620 8564620 G C PRAM1 Silent p.A24A 0.29 TCGA-69-7763-01 1 11008207 11008207 G A C1orf127 Missense_Mutation p.A662V 0.18 deleterious(0.01) benign(0) TCGA-69-7763-01 1 156816537 156816537 G A INSRR Silent p.N528N 0.10 TCGA-69-7763-01 1 226421197 226421197 C T LIN9 Missense_Mutation p.A441T 0.14 tolerated(0.32) benign(0.005) TCGA-69-7763-01 20 45875019 45875019 G C ZMYND8 Missense_Mutation p.P673A 0.22 tolerated_low_confidence(0.13) benign(0.02) TCGA-69-7763-01 2 103040348 103040348 G T IL18RAP Nonsense_Mutation p.E50* 0.11 TCGA-69-7763-01 2 105858611 105858611 G A GPR45 Missense_Mutation p.R99H 0.18 tolerated(0.27) benign(0.005) TCGA-69-7763-01 2 141291668 141291668 G T LRP1B Missense_Mutation p.R2562S 0.14 possibly_damaging(0.683) TCGA-69-7763-01 2 170101363 170101363 G A LRP2 Silent p.N1090N 0.18 TCGA-69-7763-01 2 31805965 31805965 T A SRD5A2 RNA 0.13 TCGA-69-7763-01 2 39085937 39085937 C A DHX57 Missense_Mutation p.G485C 0.28 deleterious(0.02) possibly_damaging(0.622) TCGA-69-7763-01 2 69043356 69043356 C A ARHGAP25 Intron 0.17 TCGA-69-7763-01 2 76975819 76975819 C T LRRTM4 3'UTR 0.13 TCGA-69-7763-01 3 125828895 125828895 C T ALDH1L1 Missense_Mutation p.G757R 0.35 deleterious(0) probably_damaging(0.999) TCGA-69-7763-01 3 133894818 133894818 G A RYK Silent p.A458A 0.28 TCGA-69-7763-01 3 197518157 197518157 C T LRCH3 Missense_Mutation p.A3V 0.39 deleterious_low_confidence(0.01) unknown(0) TCGA-69-7763-01 3 38988324 38988324 A G SCN11A Silent p.P114P 0.05 TCGA-69-7763-01 3 40528959 40528959 G T ZNF619 Nonsense_Mutation p.E360* 0.31 TCGA-69-7763-01 3 45988860 45988860 G A CXCR6 Missense_Mutation p.R296Q 0.10 deleterious(0.02) benign(0.298) TCGA-69-7763-01 4 126372162 126372162 G T FAT4 Missense_Mutation p.G3331W 0.11 probably_damaging(1) TCGA-69-7763-01 4 158060005 158060005 G T GLRB Missense_Mutation p.D219Y 0.19 deleterious(0) probably_damaging(0.977) TCGA-69-7763-01 4 166408697 166408697 A T CPE Missense_Mutation p.N361Y 0.08 deleterious(0) probably_damaging(1) TCGA-69-7763-01 4 166408698 166408698 A T CPE Missense_Mutation p.N361I 0.09 deleterious(0) probably_damaging(1) TCGA-69-7763-01 4 55981108 55981108 C A KDR Missense_Mutation p.M197I 0.09 tolerated(0.29) benign(0.002) TCGA-69-7763-01 4 55981109 55981109 A T KDR Missense_Mutation p.M197K 0.10 tolerated(0.06) benign(0.075) TCGA-69-7763-01 4 94750524 94750524 C A ATOH1 Silent p.S149S 0.11 TCGA-69-7763-01 5 140627195 140627195 C T PCDHB15 Silent p.A683A 0.25 TCGA-69-7763-01 5 159822295 159822295 T A C5orf54 Missense_Mutation p.H68L 0.14 tolerated(0.65) benign(0.015) TCGA-69-7763-01 5 175387036 175387036 C A THOC3 Missense_Mutation p.G331V 0.11 deleterious(0.01) possibly_damaging(0.834) TCGA-69-7763-01 5 178310482 178310482 A G ZNF354B Silent p.G343G 0.22 TCGA-69-7763-01 6 10764684 10764684 C T MAK 3'UTR 0.15 TCGA-69-7763-01 6 152623099 152623099 G A SYNE1 Silent p.L5816L 0.35 TCGA-69-7763-01 6 16328069 16328069 G T ATXN1 Missense_Mutation p.A158E 0.22 deleterious(0.02) benign(0.147) TCGA-69-7763-01 6 27806013 27806013 G A HIST1H2AK Silent p.L35L 0.09 TCGA-69-7763-01 6 28542473 28542473 T G SCAND3 Missense_Mutation p.K670T 0.11 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-69-7763-01 6 33424182 33424182 A T ZBTB9 Silent p.G435G 0.12 TCGA-69-7763-01 6 43745332 43745332 G T VEGFA Missense_Mutation p.R262L 0.23 deleterious(0.04) probably_damaging(0.948) TCGA-69-7763-01 6 47749807 47749807 C T OPN5 Missense_Mutation p.A2V 0.13 tolerated_low_confidence(0.07) probably_damaging(0.98) TCGA-69-7763-01 6 66205100 66205100 A T EYS Silent p.T68T 0.09 TCGA-69-7763-01 7 113558434 113558434 C A PPP1R3A Missense_Mutation p.E206D 0.17 deleterious(0.01) possibly_damaging(0.707) TCGA-69-7763-01 7 2834581 2834581 C T GNA12 Missense_Mutation p.R169Q 0.04 deleterious(0.05) possibly_damaging(0.621) TCGA-69-7763-01 7 38370493 38370493 G T TRGV8 5'UTR 0.39 TCGA-69-7763-01 7 75634594 75634594 G A STYXL1 Silent p.S194S 0.22 TCGA-69-7763-01 7 98984357 98984357 C T ARPC1B Silent p.S38S 0.11 TCGA-69-7763-01 8 130883703 130883703 T C FAM49B Missense_Mutation p.Q38R 0.08 tolerated(0.41) benign(0.013) TCGA-69-7763-01 8 36663852 36663852 C A KCNU1 Silent p.T178T 0.27 TCGA-69-7763-01 9 120475991 120475991 C A TLR4 Missense_Mutation p.H529N 0.17 tolerated(0.57) benign(0.147) TCGA-69-7763-01 9 128724493 128724493 G A PBX3 Silent p.Q374Q 0.14 TCGA-69-7763-01 9 136406041 136406041 G T ADAMTSL2 Silent p.L200L 0.13 TCGA-69-7763-01 9 14848737 14848737 C A FREM1 Missense_Mutation p.R396M 0.15 deleterious(0.01) possibly_damaging(0.682) TCGA-69-7763-01 9 82323092 82323092 G T TLE4 Silent p.A332A 0.12 TCGA-69-7763-01 X 10182101 10182101 G T CLCN4 Nonsense_Mutation p.E653* 0.33 TCGA-69-7763-01 X 11793130 11793130 C T MSL3 Missense_Mutation p.P500S 0.06 tolerated(0.11) probably_damaging(0.997) TCGA-69-7763-01 X 155003947 155003947 G C SPRY3 Silent p.G138G 0.19 TCGA-69-7763-01 X 41077680 41077680 G T USP9X Missense_Mutation p.A2089S 0.24 deleterious(0.01) benign(0.049) TCGA-69-7764-01 10 112655791 112655791 A T PDCD4 Missense_Mutation p.E432V 0.07 tolerated(0.15) benign(0.009) TCGA-69-7764-01 10 27436425 27436425 A G YME1L1 Splice_Site p.X113_splice 0.21 TCGA-69-7764-01 11 102100563 102100563 G A YAP1 Silent p.E469E 0.07 TCGA-69-7764-01 11 20177910 20177910 G A DBX1 Silent p.S333S 0.36 TCGA-69-7764-01 11 25004797 25004797 G T LUZP2 Missense_Mutation p.R241S 0.37 tolerated(0.88) benign(0.004) TCGA-69-7764-01 11 59417006 59417006 T C PATL1 Silent p.L554L 0.44 TCGA-69-7764-01 11 85345276 85345276 C T TMEM126B Missense_Mutation p.S117F 0.22 deleterious(0) probably_damaging(0.995) TCGA-69-7764-01 11 85345296 85345296 C T TMEM126B Missense_Mutation p.L124F 0.27 tolerated(0.52) benign(0.046) TCGA-69-7764-01 11 9495562 9495562 C A ZNF143 Missense_Mutation p.P94T 0.37 tolerated(0.2) benign(0.002) TCGA-69-7764-01 12 110236701 110236701 C T TRPV4 Silent p.S290S 0.36 TCGA-69-7764-01 12 21201742 21201742 C T SLCO1B7 Missense_Mutation p.A364V 0.44 tolerated(0.33) benign(0.03) TCGA-69-7764-01 12 5841686 5841686 C T ANO2 Silent p.E515E 0.23 TCGA-69-7764-01 12 66232299 66232299 A G HMGA2 Missense_Mutation p.K67E 0.12 tolerated(0.07) benign(0.292) TCGA-69-7764-01 12 70087629 70087629 C A BEST3 Missense_Mutation p.W102C 0.17 deleterious(0) probably_damaging(0.996) TCGA-69-7764-01 14 20248683 20248683 C G OR4M1 Missense_Mutation p.L68V 0.11 tolerated(0.18) benign(0.014) TCGA-69-7764-01 14 20586392 20586392 C A OR4K17 Missense_Mutation p.T276K 0.26 deleterious(0) probably_damaging(0.965) TCGA-69-7764-01 14 24551823 24551823 G A NRL Nonsense_Mutation p.Q79* 0.14 TCGA-69-7764-01 14 31774300 31774300 A G RP11-596D21.1 3'Flank 0.09 TCGA-69-7764-01 14 44973672 44973672 A T FSCB 3'UTR 0.20 TCGA-69-7764-01 14 58563492 58563492 G C C14orf37 Missense_Mutation p.T680S 0.40 tolerated(0.35) possibly_damaging(0.486) TCGA-69-7764-01 14 65234487 65234487 C A SPTB Missense_Mutation p.G2038V 0.33 deleterious(0) probably_damaging(1) TCGA-69-7764-01 15 20588515 20588515 A C HERC2P3 RNA 0.10 TCGA-69-7764-01 15 31318398 31318398 C A TRPM1 Missense_Mutation p.E1208D 0.09 deleterious(0.02) possibly_damaging(0.45) TCGA-69-7764-01 15 43819215 43819215 G A MAP1A Silent p.K1848K 0.06 TCGA-69-7764-01 15 43893141 43893141 C A STRC Silent p.L1591L 0.19 TCGA-69-7764-01 15 65114717 65114717 G T PIF1 Silent p.A217A 0.25 TCGA-69-7764-01 15 74636145 74636145 C A CYP11A1 Missense_Mutation p.V272L 0.20 tolerated(0.69) benign(0.005) TCGA-69-7764-01 15 77906450 77906450 C A LINGO1 Missense_Mutation p.R600L 0.68 deleterious(0) probably_damaging(0.966) TCGA-69-7764-01 15 80191311 80191311 G C ST20 Missense_Mutation p.L68V 0.52 deleterious_low_confidence(0.02) benign(0.001) TCGA-69-7764-01 15 83932044 83932044 G A BNC1 Silent p.G653G 0.11 TCGA-69-7764-01 16 15820850 15820850 C A MYH11 Missense_Mutation p.G1245V 0.30 benign(0.002) TCGA-69-7764-01 16 21098273 21098273 C T DNAH3 Missense_Mutation p.R925H 0.06 deleterious(0.02) benign(0.426) TCGA-69-7764-01 16 21969921 21969921 G C UQCRC2 Splice_Site p.X111_splice 0.12 TCGA-69-7764-01 16 424296 424296 G A TMEM8A Silent p.A560A 0.07 TCGA-69-7764-01 17 29667604 29667604 A C NF1 Missense_Mutation p.T2335P 0.67 deleterious(0) probably_damaging(0.986) TCGA-69-7764-01 17 39254136 39254136 G T KRTAP4-8 Silent p.P67P 0.62 TCGA-69-7764-01 17 39254137 39254137 G T KRTAP4-8 Missense_Mutation p.P67H 0.64 deleterious(0) unknown(0) TCGA-69-7764-01 18 47814055 47814055 C A CXXC1 5'Flank 0.46 TCGA-69-7764-01 18 76754643 76754643 C T SALL3 Silent p.G884G 0.45 TCGA-69-7764-01 19 14810083 14810083 A G ZNF333 Missense_Mutation p.D99G 0.10 tolerated(0.74) possibly_damaging(0.539) TCGA-69-7764-01 19 32954830 32954830 A G DPY19L3 Missense_Mutation p.S501G 0.21 tolerated(0.24) benign(0.05) TCGA-69-7764-01 19 33135266 33135266 G A ANKRD27 Nonsense_Mutation p.R164* 0.05 TCGA-69-7764-01 19 35823644 35823644 T C CD22 Missense_Mutation p.Y77H 0.63 deleterious(0.03) probably_damaging(0.982) TCGA-69-7764-01 19 40722103 40722103 C T TTC9B Silent p.G229G 0.36 TCGA-69-7764-01 19 44590164 44590164 A T ZNF284 Missense_Mutation p.N178I 0.22 tolerated(0.07) benign(0.096) TCGA-69-7764-01 19 56896146 56896146 G T ZNF582 Missense_Mutation p.L214I 0.57 deleterious(0) possibly_damaging(0.875) TCGA-69-7764-01 1 11103420 11103420 G C MASP2 Silent p.T239T 0.47 TCGA-69-7764-01 1 113068633 113068633 G A ST7L 3'UTR 0.24 TCGA-69-7764-01 1 113068634 113068634 C A ST7L 3'UTR 0.24 TCGA-69-7764-01 1 149884879 149884879 G T SV2A Missense_Mutation p.L172I 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-69-7764-01 1 15986768 15986768 C T RSC1A1 Silent p.V135V 0.19 TCGA-69-7764-01 1 162470776 162470776 G T UHMK1 Missense_Mutation p.G212V 0.25 tolerated(0.28) probably_damaging(0.915) TCGA-69-7764-01 1 196227494 196227494 C T KCNT2 Missense_Mutation p.S1014N 0.17 deleterious_low_confidence(0.02) probably_damaging(0.985) TCGA-69-7764-01 1 216246299 216246299 C A USH2A Missense_Mutation p.R1930L 0.23 probably_damaging(0.997) TCGA-69-7764-01 1 231672960 231672960 A G TSNAX Silent p.S41S 0.58 TCGA-69-7764-01 1 39768595 39768595 G C MACF1 Splice_Site p.X884_splice 0.57 TCGA-69-7764-01 1 9027819 9027819 A G CA6 Missense_Mutation p.T225A 0.29 tolerated(0.18) possibly_damaging(0.75) TCGA-69-7764-01 20 4163119 4163119 C T SMOX Silent p.T331T 0.04 TCGA-69-7764-01 20 57767569 57767569 G A ZNF831 Missense_Mutation p.V499I 0.29 deleterious(0.02) possibly_damaging(0.541) TCGA-69-7764-01 22 32498215 32498215 G A SLC5A1 Silent p.P552P 0.13 TCGA-69-7764-01 22 36921726 36921726 C T EIF3D Missense_Mutation p.D52N 0.61 tolerated(0.16) possibly_damaging(0.585) TCGA-69-7764-01 2 119739028 119739028 G A MARCO Missense_Mutation p.M270I 0.45 tolerated(0.16) possibly_damaging(0.708) TCGA-69-7764-01 2 152118255 152118255 C A RBM43 5'UTR 0.17 TCGA-69-7764-01 2 188343387 188343387 G A TFPI Intron 0.40 TCGA-69-7764-01 2 27426720 27426720 C A SLC5A6 Missense_Mutation p.V341L 0.42 deleterious(0) probably_damaging(0.986) TCGA-69-7764-01 2 86357768 86357768 C T PTCD3 Intron 0.34 TCGA-69-7764-01 2 96952528 96952528 C T SNRNP200 Missense_Mutation p.A1243T 0.31 deleterious(0.03) benign(0.309) TCGA-69-7764-01 3 101049218 101049218 C A SENP7 Missense_Mutation p.R904L 0.29 tolerated(0.2) benign(0.03) TCGA-69-7764-01 3 101060531 101060531 A G SENP7 Silent p.D733D 0.33 TCGA-69-7764-01 3 108474569 108474569 G C RETNLB 3'UTR 0.43 TCGA-69-7764-01 3 127395254 127395254 G A ABTB1 Missense_Mutation p.V154M 0.42 deleterious(0) probably_damaging(0.964) TCGA-69-7764-01 3 151101588 151101588 G C MED12L Missense_Mutation p.V1533L 0.25 deleterious(0.01) benign(0.017) TCGA-69-7764-01 3 16411726 16411726 T C RFTN1 Missense_Mutation p.Y296C 0.30 deleterious(0) probably_damaging(1) TCGA-69-7764-01 3 20136892 20136892 C T KAT2B Silent p.L190L 0.30 TCGA-69-7764-01 3 27453205 27453205 G A SLC4A7 Missense_Mutation p.S556F 0.15 deleterious(0.01) possibly_damaging(0.812) TCGA-69-7764-01 3 38616870 38616870 C T SCN5A Missense_Mutation p.R1195H 0.21 deleterious(0) probably_damaging(0.948) TCGA-69-7764-01 3 39227249 39227249 G T XIRP1 Missense_Mutation p.P1230T 0.19 deleterious_low_confidence(0.01) benign(0.141) TCGA-69-7764-01 4 46967031 46967031 C A GABRA4 Missense_Mutation p.A364S 0.20 tolerated(0.47) benign(0.014) TCGA-69-7764-01 4 46967032 46967032 G A GABRA4 Silent p.P363P 0.20 TCGA-69-7764-01 4 70810659 70810659 C T CSN1S1 Missense_Mutation p.S165F 0.65 tolerated(0.7) probably_damaging(0.919) TCGA-69-7764-01 5 140588669 140588669 G T PCDHB12 Missense_Mutation p.A64S 0.47 deleterious_low_confidence(0.04) benign(0.228) TCGA-69-7764-01 5 140590252 140590252 G T PCDHB12 Silent p.A591A 0.12 TCGA-69-7764-01 5 140603954 140603954 G A PCDHB14 Missense_Mutation p.E293K 0.55 tolerated_low_confidence(0.15) benign(0.168) TCGA-69-7764-01 5 141384676 141384676 C A GNPDA1 Missense_Mutation p.G139C 0.28 deleterious(0) probably_damaging(1) TCGA-69-7764-01 5 149361032 149361032 G C SLC26A2 Missense_Mutation p.V626L 0.37 tolerated(0.4) benign(0.008) TCGA-69-7764-01 5 149677248 149677248 G A ARSI Silent p.T413T 0.10 TCGA-69-7764-01 5 159996679 159996679 G T ATP10B Missense_Mutation p.H1254Q 0.05 deleterious(0.04) possibly_damaging(0.741) TCGA-69-7764-01 5 179393827 179393827 C T RNF130 Missense_Mutation p.E377K 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.551) TCGA-69-7764-01 5 43174701 43174701 A T ZNF131 Silent p.S412S 0.19 TCGA-69-7764-01 5 86627281 86627281 C A RASA1 Nonsense_Mutation p.S219* 0.18 TCGA-69-7764-01 6 167753608 167753608 A T TTLL2 Missense_Mutation p.M74L 0.74 tolerated(0.08) benign(0.01) TCGA-69-7764-01 6 31896516 31896516 C T CFB Intron 0.46 TCGA-69-7764-01 6 32008995 32008995 C A CYP21A2 3'UTR 0.36 TCGA-69-7764-01 6 47847177 47847177 A T PTCHD4 Missense_Mutation p.V468D 0.35 deleterious(0) probably_damaging(0.992) TCGA-69-7764-01 6 6145974 6145974 C - F13A1 Frame_Shift_Del p.E693Kfs*14 0.31 TCGA-69-7764-01 6 73904239 73904239 G T KCNQ5 Missense_Mutation p.G653V 0.26 deleterious(0) probably_damaging(0.998) TCGA-69-7764-01 6 97246786 97246786 C T GPR63 Silent p.L274L 0.71 TCGA-69-7764-01 7 136700178 136700178 G C CHRM2 Missense_Mutation p.G189A 0.06 deleterious(0.05) probably_damaging(0.951) TCGA-69-7764-01 7 150269579 150269579 T C GIMAP4 Missense_Mutation p.F141L 0.41 deleterious(0.02) probably_damaging(1) TCGA-69-7764-01 7 150771283 150771283 C A SLC4A2 Missense_Mutation p.P898H 0.07 deleterious(0) probably_damaging(1) TCGA-69-7764-01 7 57187575 57187575 G T ZNF479 Missense_Mutation p.T516N 0.31 deleterious(0) probably_damaging(0.991) TCGA-69-7764-01 7 6078292 6078292 T C EIF2AK1 Missense_Mutation p.H377R 0.36 tolerated(0.21) benign(0.098) TCGA-69-7764-01 7 7283267 7283267 G T C1GALT1 Missense_Mutation p.R334I 0.30 deleterious(0) possibly_damaging(0.786) TCGA-69-7764-01 8 101601110 101601110 A G SNX31 Missense_Mutation p.V359A 0.15 tolerated(0.05) benign(0.41) TCGA-69-7764-01 8 2949067 2949067 C G CSMD1 Missense_Mutation p.S2419T 0.26 benign(0.034) TCGA-69-7764-01 8 4851912 4851912 C A CSMD1 Silent p.S9S 0.29 TCGA-69-7764-01 8 72184036 72184036 C T EYA1 Missense_Mutation p.R308Q 0.25 deleterious(0.01) probably_damaging(0.96) TCGA-69-7764-01 8 72945999 72945999 G T TRPA1 Silent p.I916I 0.11 TCGA-69-7764-01 8 86357439 86357439 A C CA3 Missense_Mutation p.K167Q 0.50 tolerated(0.05) possibly_damaging(0.807) TCGA-69-7764-01 8 88249280 88249280 G T CNBD1 Missense_Mutation p.W237C 0.32 tolerated(0.09) benign(0.011) TCGA-69-7764-01 9 100617228 100617228 G A FOXE1 Silent p.G344G 0.11 TCGA-69-7764-01 9 140417297 140417301 GTGCA - PNPLA7 Frame_Shift_Del p.A253Lfs*27 0.19 TCGA-69-7764-01 9 18504846 18504846 C A ADAMTSL1 Missense_Mutation p.S28Y 0.69 deleterious(0) probably_damaging(0.999) TCGA-69-7764-01 9 73213399 73213399 C T TRPM3 Missense_Mutation p.R983H 0.52 deleterious(0.04) probably_damaging(0.998) TCGA-69-7764-01 9 80869844 80869844 G A CEP78 Silent p.V449V 0.47 TCGA-69-7764-01 X 119210983 119210983 T C RHOXF2B Missense_Mutation p.Q117R 0.88 tolerated(0.06) benign(0.204) TCGA-69-7764-01 X 119210984 119210984 G T RHOXF2B Missense_Mutation p.Q117K 0.88 tolerated(0.11) benign(0.132) TCGA-69-7764-01 X 32466631 32466631 A G DMD Missense_Mutation p.L1243P 0.29 probably_damaging(0.983) TCGA-69-7765-01 10 101841176 101841176 A G CPN1 Silent p.P69P 0.33 TCGA-69-7765-01 10 104572912 104572912 G T WBP1L Missense_Mutation p.D306Y 0.16 deleterious(0) probably_damaging(0.986) TCGA-69-7765-01 10 117093890 117093890 G A ATRNL1 Missense_Mutation p.G1046S 0.14 deleterious(0) probably_damaging(0.999) TCGA-69-7765-01 10 127569112 127569112 C A DHX32 Missense_Mutation p.Q94H 0.21 deleterious(0) probably_damaging(0.999) TCGA-69-7765-01 10 135086508 135086508 G C ADAM8 Missense_Mutation p.R197G 0.14 tolerated(0.06) possibly_damaging(0.889) TCGA-69-7765-01 10 15559227 15559227 C A ITGA8 Missense_Mutation p.R1041I 0.19 deleterious(0) probably_damaging(1) TCGA-69-7765-01 10 18787304 18787304 G C CACNB2 Silent p.A118A 0.19 TCGA-69-7765-01 10 22615878 22615878 G T BMI1 Missense_Mutation p.V58F 0.16 deleterious(0) benign(0.291) TCGA-69-7765-01 10 24832540 24832540 C G KIAA1217 Missense_Mutation p.F1447L 0.25 tolerated(0.06) probably_damaging(0.99) TCGA-69-7765-01 10 29813479 29813479 C T SVIL Silent p.R836R 0.21 TCGA-69-7765-01 10 323219 323219 C A DIP2C 3'UTR 0.19 TCGA-69-7765-01 10 37508039 37508039 T G ANKRD30A Missense_Mutation p.F1077L 0.24 tolerated(0.89) possibly_damaging(0.483) TCGA-69-7765-01 10 45488724 45488724 G T RASSF4 Missense_Mutation p.A305S 0.21 tolerated(0.26) benign(0.257) TCGA-69-7765-01 10 48390663 48390663 C A RBP3 Missense_Mutation p.S72I 0.11 tolerated(0.09) possibly_damaging(0.633) TCGA-69-7765-01 10 4872896 4872896 G A AKR1E2 Silent p.V23V 0.07 TCGA-69-7765-01 10 49393668 49393668 T A FRMPD2 Nonsense_Mutation p.K763* 0.17 TCGA-69-7765-01 10 55782702 55782702 C G PCDH15 Missense_Mutation p.V826L 0.19 deleterious(0.04) possibly_damaging(0.619) TCGA-69-7765-01 10 60588583 60588583 G T BICC1 Missense_Mutation p.G953C 0.14 deleterious(0) probably_damaging(1) TCGA-69-7765-01 10 64136238 64136238 C A ZNF365 Missense_Mutation p.P96T 0.18 tolerated_low_confidence(0.08) benign(0.069) TCGA-69-7765-01 10 69407230 69407230 C A CTNNA3 Missense_Mutation p.Q14H 0.24 deleterious(0.03) benign(0.216) TCGA-69-7765-01 10 7683904 7683904 G A ITIH5 Silent p.I95I 0.06 TCGA-69-7765-01 10 79616594 79616594 C T DLG5 Missense_Mutation p.E144K 0.42 deleterious(0.01) benign(0.16) TCGA-69-7765-01 10 83635516 83635516 C A NRG3 Silent p.P140P 0.42 TCGA-69-7765-01 10 93723909 93723909 A G BTAF1 Missense_Mutation p.M494V 0.22 tolerated(0.05) possibly_damaging(0.742) TCGA-69-7765-01 10 96006295 96006295 C G PLCE1 Missense_Mutation p.L1005V 0.14 tolerated(0.36) benign(0.076) TCGA-69-7765-01 10 96967138 96967138 T A C10orf129 Missense_Mutation p.Y193N 0.20 deleterious(0.01) benign(0.334) TCGA-69-7765-01 11 100999663 100999663 C - PGR Frame_Shift_Del p.E47Kfs*119 0.11 TCGA-69-7765-01 11 101342017 101342017 C A TRPC6 Missense_Mutation p.S769I 0.15 tolerated(0.07) possibly_damaging(0.448) TCGA-69-7765-01 11 108183144 108183144 T A ATM Silent p.L1975L 0.09 TCGA-69-7765-01 11 108594087 108594087 A T DDX10 Silent p.T621T 0.31 TCGA-69-7765-01 11 113102941 113102941 C A NCAM1 Missense_Mutation p.N479K 0.18 deleterious(0.01) possibly_damaging(0.628) TCGA-69-7765-01 11 11362386 11362386 C A GALNT18 Missense_Mutation p.A420S 0.08 deleterious(0.03) probably_damaging(0.997) TCGA-69-7765-01 11 118944508 118944508 A T VPS11 Splice_Site p.X362_splice 0.12 TCGA-69-7765-01 11 120348935 120348935 G A ARHGEF12 Silent p.G1201G 0.09 TCGA-69-7765-01 11 123814296 123814296 C A OR6T1 Missense_Mutation p.V84F 0.13 tolerated(0.26) benign(0.007) TCGA-69-7765-01 11 1266056 1266056 C A MUC5B Missense_Mutation p.P2649H 0.34 unknown(0) TCGA-69-7765-01 11 134014219 134014219 C A JAM3 Missense_Mutation p.R114S 0.22 deleterious(0) probably_damaging(1) TCGA-69-7765-01 11 14882866 14882866 T A PDE3B Nonsense_Mutation p.L947* 0.09 TCGA-69-7765-01 11 14882896 14882896 A T PDE3B Missense_Mutation p.N957I 0.09 deleterious(0) probably_damaging(0.998) TCGA-69-7765-01 11 1606012 1606012 G A KRTAP5-1 Silent p.G156G 0.12 TCGA-69-7765-01 11 18103035 18103035 C A SAAL1 Nonsense_Mutation p.G419* 0.10 TCGA-69-7765-01 11 18722737 18722737 C T TMEM86A Silent p.F93F 0.07 TCGA-69-7765-01 11 27149050 27149050 G T BBOX1 3'UTR 0.13 TCGA-69-7765-01 11 30033634 30033634 G A KCNA4 Missense_Mutation p.P198S 0.07 deleterious(0) probably_damaging(0.993) TCGA-69-7765-01 11 30033738 30033738 C A KCNA4 Missense_Mutation p.G163V 0.10 tolerated(0.17) benign(0.278) TCGA-69-7765-01 11 30033974 30033974 C T KCNA4 Silent p.R84R 0.36 TCGA-69-7765-01 11 43940636 43940636 G T ALKBH3 Missense_Mutation p.D240Y 0.24 deleterious(0.01) probably_damaging(0.918) TCGA-69-7765-01 11 44105101 44105101 C G ACCS Nonsense_Mutation p.S461* 0.04 TCGA-69-7765-01 11 4510775 4510775 T G OR52K1 Missense_Mutation p.F215L 0.11 tolerated(0.75) benign(0.047) TCGA-69-7765-01 11 46916274 46916274 T C LRP4 Missense_Mutation p.N469S 0.32 deleterious(0.01) possibly_damaging(0.722) TCGA-69-7765-01 11 49974514 49974514 C A OR4C13 Nonsense_Mutation p.Y180* 0.11 TCGA-69-7765-01 11 5020422 5020422 G T OR51L1 Silent p.V70V 0.27 TCGA-69-7765-01 11 5291054 5291054 C T HBE1 Missense_Mutation p.E23K 0.07 tolerated(0.22) benign(0.01) TCGA-69-7765-01 11 55032584 55032584 C T TRIM48 Nonsense_Mutation p.R85* 0.06 TCGA-69-7765-01 11 55038444 55038444 T A TRIM48 3'UTR 0.32 TCGA-69-7765-01 11 5528910 5528910 C G UBQLN3 Missense_Mutation p.G627R 0.28 deleterious(0) probably_damaging(1) TCGA-69-7765-01 11 5528911 5528911 C A UBQLN3 Missense_Mutation p.M626I 0.27 deleterious(0.01) benign(0.433) TCGA-69-7765-01 11 55541053 55541053 T G OR5D13 Missense_Mutation p.M47R 0.22 deleterious(0.01) probably_damaging(0.95) TCGA-69-7765-01 11 55587535 55587535 C T OR5D18 Silent p.L144L 0.08 TCGA-69-7765-01 11 55587957 55587957 C T OR5D18 Silent p.P284P 0.14 TCGA-69-7765-01 11 55735790 55735790 C A OR10AG1 Missense_Mutation p.M50I 0.18 deleterious(0.01) benign(0.41) TCGA-69-7765-01 11 55735793 55735793 G C OR10AG1 Silent p.P49P 0.17 TCGA-69-7765-01 11 56000021 56000021 C A OR5T2 Missense_Mutation p.R214M 0.11 deleterious(0) probably_damaging(0.976) TCGA-69-7765-01 11 56230691 56230691 G T OR5M9 Missense_Mutation p.H63N 0.17 tolerated(0.31) benign(0.109) TCGA-69-7765-01 11 56237247 56237247 G A OR5M3 Silent p.L243L 0.17 TCGA-69-7765-01 11 56345137 56345137 G A OR5M10 Missense_Mutation p.P21S 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-69-7765-01 11 57970762 57970762 T A OR1S2 Missense_Mutation p.M298L 0.07 tolerated(1) benign(0.001) TCGA-69-7765-01 11 58190619 58190619 C A OR5B2 Missense_Mutation p.G39V 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.799) TCGA-69-7765-01 11 5841574 5841574 G T OR52N2 Silent p.G3G 0.06 TCGA-69-7765-01 11 6007986 6007986 C A OR52L1 Missense_Mutation p.G59C 0.15 deleterious(0) probably_damaging(1) TCGA-69-7765-01 11 60785403 60785403 C A CD6 Silent p.P585P 0.10 TCGA-69-7765-01 11 62558318 62558318 C A TMEM223 Missense_Mutation p.G129V 0.35 deleterious(0) probably_damaging(0.999) TCGA-69-7765-01 11 6291332 6291332 G T CCKBR Missense_Mutation p.V140L 0.19 deleterious(0) probably_damaging(0.986) TCGA-69-7765-01 11 64888175 64888175 T A FAU Missense_Mutation p.K127M 0.39 deleterious(0) probably_damaging(0.976) TCGA-69-7765-01 11 773602 773602 G C PDDC1 Missense_Mutation p.P92R 0.26 deleterious(0) probably_damaging(0.994) TCGA-69-7765-01 11 78412943 78412943 G T TENM4 Missense_Mutation p.T1572N 0.27 tolerated(0.39) benign(0.002) TCGA-69-7765-01 11 8060537 8060537 G T TUB Missense_Mutation p.R39S 0.08 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-69-7765-01 11 85989472 85989472 G C EED Missense_Mutation p.A411P 0.22 deleterious(0.01) benign(0.116) TCGA-69-7765-01 11 99941257 99941257 C A CNTN5 Missense_Mutation p.R422S 0.37 tolerated(0.25) possibly_damaging(0.48) TCGA-69-7765-01 12 101760420 101760420 G T UTP20 Missense_Mutation p.Q2070H 0.21 tolerated(0.23) benign(0.375) TCGA-69-7765-01 12 105385610 105385610 G T C12orf45 Missense_Mutation p.S108I 0.07 deleterious(0.01) benign(0.008) TCGA-69-7765-01 12 109654631 109654631 G T ACACB Missense_Mutation p.R1157M 0.11 deleterious(0) probably_damaging(0.934) TCGA-69-7765-01 12 109654632 109654632 G T ACACB Missense_Mutation p.R1157S 0.12 deleterious(0) possibly_damaging(0.756) TCGA-69-7765-01 12 113812710 113812710 G T PLBD2 Missense_Mutation p.G253C 0.08 deleterious(0) probably_damaging(0.956) TCGA-69-7765-01 12 120966774 120966774 C A COQ5 Missense_Mutation p.E57D 0.16 deleterious(0) possibly_damaging(0.803) TCGA-69-7765-01 12 122734456 122734456 T C VPS33A Missense_Mutation p.Y246C 0.15 deleterious(0) probably_damaging(1) TCGA-69-7765-01 12 131280644 131280644 C A STX2 Missense_Mutation p.V270L 0.09 tolerated(0.17) benign(0.184) TCGA-69-7765-01 12 133384862 133384862 C A GOLGA3 Missense_Mutation p.A265S 0.18 tolerated_low_confidence(0.26) benign(0.02) TCGA-69-7765-01 12 16704109 16704109 T C LMO3 3'UTR 0.19 TCGA-69-7765-01 12 27944681 27944681 G T KLHL42 Missense_Mutation p.A305S 0.25 deleterious(0) probably_damaging(0.988) TCGA-69-7765-01 12 29617589 29617589 A - OVCH1 Frame_Shift_Del p.L659Qfs*9 0.21 TCGA-69-7765-01 12 3129840 3129840 G T TEAD4 Silent p.A208A 0.30 TCGA-69-7765-01 12 43770388 43770388 G T ADAMTS20 Silent p.S1688S 0.22 TCGA-69-7765-01 12 43770389 43770389 G T ADAMTS20 Missense_Mutation p.S1688Y 0.24 deleterious(0) possibly_damaging(0.817) TCGA-69-7765-01 12 4835915 4835915 C T GALNT8 Silent p.L143L 0.08 TCGA-69-7765-01 12 49523382 49523382 C A TUBA1B Missense_Mutation p.G43W 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-69-7765-01 12 49951315 49951315 C T KCNH3 Missense_Mutation p.A944V 0.31 tolerated_low_confidence(0.43) benign(0.001) TCGA-69-7765-01 12 49994704 49994704 A G FAM186B Missense_Mutation p.V240A 0.17 deleterious(0) possibly_damaging(0.848) TCGA-69-7765-01 12 50062266 50062266 C T FMNL3 Silent p.L66L 0.20 TCGA-69-7765-01 12 51458021 51458021 G A CSRNP2 Silent p.L380L 0.07 TCGA-69-7765-01 12 52757119 52757119 T C KRT85 Missense_Mutation p.M288V 0.12 tolerated(0.15) benign(0.056) TCGA-69-7765-01 12 52827880 52827880 C A KRT75 Missense_Mutation p.R70L 0.14 deleterious(0.01) benign(0.018) TCGA-69-7765-01 12 52962019 52962019 C T KRT74 Missense_Mutation p.S430N 0.23 tolerated(0.98) benign(0.168) TCGA-69-7765-01 12 53045387 53045387 C T KRT2 Silent p.E180E 0.10 TCGA-69-7765-01 12 53342897 53342897 C A KRT18 5'UTR 0.17 TCGA-69-7765-01 12 54675955 54675955 C A HNRNPA1 Missense_Mutation p.L121I 0.26 deleterious(0.03) probably_damaging(0.923) TCGA-69-7765-01 12 55420403 55420403 G A NEUROD4 Silent p.E60E 0.16 TCGA-69-7765-01 12 55615705 55615705 G T OR10A7 Silent p.G299G 0.16 TCGA-69-7765-01 12 57850300 57850300 A T INHBE Missense_Mutation p.E241V 0.20 deleterious(0.03) benign(0.221) TCGA-69-7765-01 12 58008550 58008550 C A ARHGEF25 Missense_Mutation p.Q338K 0.12 deleterious(0) probably_damaging(1) TCGA-69-7765-01 12 62902308 62902308 G T MON2 Intron 0.26 TCGA-69-7765-01 12 65672556 65672556 C A MSRB3 Missense_Mutation p.P3Q 0.40 tolerated_low_confidence(0.08) benign(0.027) TCGA-69-7765-01 12 78516155 78516155 G C NAV3 Missense_Mutation p.E1395D 0.14 tolerated(0.92) benign(0.02) TCGA-69-7765-01 12 81112163 81112163 C A MYF5 Silent p.S176S 0.11 TCGA-69-7765-01 12 88586476 88586476 A T TMTC3 Missense_Mutation p.Y601F 0.19 deleterious(0.05) possibly_damaging(0.55) TCGA-69-7765-01 12 91449195 91449195 G A KERA Silent p.H288H 0.07 TCGA-69-7765-01 12 994776 994776 C T WNK1 Silent p.P1602P 0.23 TCGA-69-7765-01 13 101759851 101759851 C A NALCN Missense_Mutation p.A856S 0.17 tolerated(0.17) possibly_damaging(0.751) TCGA-69-7765-01 13 103346735 103346735 G T METTL21C Silent p.T38T 0.14 TCGA-69-7765-01 13 20763189 20763189 C T GJB2 Missense_Mutation p.V178M 0.14 deleterious(0) probably_damaging(1) TCGA-69-7765-01 13 24200868 24200868 G T TNFRSF19 Missense_Mutation p.V128F 0.20 tolerated(0.7) probably_damaging(0.969) TCGA-69-7765-01 13 32978379 32978379 G A N4BP2L1 Intron 0.08 TCGA-69-7765-01 13 35619507 35619507 C T NBEA Missense_Mutation p.T231I 0.10 tolerated(0.19) benign(0.02) TCGA-69-7765-01 13 36700173 36700173 C T DCLK1 Silent p.T34T 0.05 TCGA-69-7765-01 13 36878498 36878498 T A SPG20 3'UTR 0.18 TCGA-69-7765-01 13 41767966 41767966 C A KBTBD7 Missense_Mutation p.R143L 0.13 tolerated(0.07) possibly_damaging(0.852) TCGA-69-7765-01 13 43935525 43935525 T C ENOX1 Missense_Mutation p.N91S 0.22 tolerated(0.29) benign(0.042) TCGA-69-7765-01 13 50123718 50123718 C A RCBTB1 Silent p.V307V 0.15 TCGA-69-7765-01 13 52960220 52960220 G T THSD1 Missense_Mutation p.P375T 0.20 tolerated(0.31) possibly_damaging(0.791) TCGA-69-7765-01 13 53616110 53616110 T A OLFM4 Silent p.I141I 0.12 TCGA-69-7765-01 13 53624337 53624337 C A OLFM4 Silent p.R322R 0.12 TCGA-69-7765-01 13 70535441 70535441 T G KLHL1 Silent p.T272T 0.16 TCGA-69-7765-01 13 95705394 95705394 G A ABCC4 Silent p.P1137P 0.15 TCGA-69-7765-01 13 95840711 95840711 C A ABCC4 Missense_Mutation p.G450V 0.15 deleterious(0) probably_damaging(0.992) TCGA-69-7765-01 14 103174805 103174805 C A RCOR1 Missense_Mutation p.P222T 0.23 deleterious(0) probably_damaging(0.999) TCGA-69-7765-01 14 105417135 105417135 C T AHNAK2 Silent p.E1551E 0.22 TCGA-69-7765-01 14 20585608 20585608 C A OR4K17 Missense_Mutation p.L15I 0.10 deleterious_low_confidence(0.03) benign(0.003) TCGA-69-7765-01 14 20586231 20586231 C T OR4K17 Silent p.D222D 0.11 TCGA-69-7765-01 14 20692357 20692357 C A OR11H6 Silent p.V163V 0.23 TCGA-69-7765-01 14 21550064 21550064 G A ARHGEF40 Missense_Mutation p.G1013R 0.17 deleterious(0.01) possibly_damaging(0.83) TCGA-69-7765-01 14 21826513 21826513 T C SUPT16H Missense_Mutation p.K792R 0.08 tolerated(0.3) benign(0.014) TCGA-69-7765-01 14 24527173 24527173 G T LRRC16B Missense_Mutation p.G408C 0.06 tolerated(0.17) possibly_damaging(0.63) TCGA-69-7765-01 14 31376229 31376229 G A STRN3 Missense_Mutation p.T581I 0.22 tolerated(0.13) probably_damaging(0.925) TCGA-69-7765-01 14 39764137 39764137 G T CTAGE5 Missense_Mutation p.M197I 0.17 tolerated(0.1) benign(0.001) TCGA-69-7765-01 14 42373362 42373362 G T LRFN5 Missense_Mutation p.R715M 0.29 deleterious_low_confidence(0) benign(0.012) TCGA-69-7765-01 14 50081051 50081051 G C LRR1 Missense_Mutation p.R361T 0.05 tolerated(0.16) benign(0.044) TCGA-69-7765-01 14 52508872 52508872 C A NID2 Missense_Mutation p.W592C 0.14 deleterious(0) probably_damaging(1) TCGA-69-7765-01 14 56139388 56139388 G T KTN1 Missense_Mutation p.R1191L 0.37 deleterious(0) benign(0.214) TCGA-69-7765-01 14 60212731 60212731 C A RTN1 Missense_Mutation p.R237L 0.17 tolerated(0.3) benign(0.002) TCGA-69-7765-01 14 60933712 60933712 C - C14orf39 Frame_Shift_Del p.S273Ifs*12 0.22 TCGA-69-7765-01 14 63174819 63174819 G T KCNH5 Missense_Mutation p.Q792K 0.08 tolerated_low_confidence(0.82) benign(0) TCGA-69-7765-01 14 66136030 66136030 C T FUT8 Nonsense_Mutation p.Q223* 0.21 TCGA-69-7765-01 14 68251821 68251821 T C ZFYVE26 Missense_Mutation p.S1160G 0.10 deleterious(0.05) benign(0.003) TCGA-69-7765-01 14 70990477 70990477 A T ADAM20 Nonsense_Mutation p.L383* 0.22 TCGA-69-7765-01 14 71197334 71197334 T A MAP3K9 Silent p.T1040T 0.16 TCGA-69-7765-01 14 71518724 71518724 C G PCNX Missense_Mutation p.D1524E 0.26 deleterious(0.02) benign(0.076) TCGA-69-7765-01 14 71576284 71576284 G T PCNX Missense_Mutation p.S2287I 0.12 deleterious_low_confidence(0.01) benign(0.157) TCGA-69-7765-01 14 73137954 73137954 T A DPF3 Missense_Mutation p.T322S 0.15 tolerated_low_confidence(0.21) benign(0) TCGA-69-7765-01 14 73181194 73181194 C T DPF3 Missense_Mutation p.G181R 0.28 tolerated(0.25) possibly_damaging(0.58) TCGA-69-7765-01 14 75514922 75514922 T C MLH3 Silent p.S479S 0.12 TCGA-69-7765-01 14 77709290 77709290 T C TMEM63C Missense_Mutation p.I411T 0.18 deleterious(0.01) benign(0.057) TCGA-69-7765-01 14 95110002 95110002 G T SERPINA13P RNA 0.26 TCGA-69-7765-01 15 23049045 23049045 C A NIPA1 Silent p.S258S 0.19 TCGA-69-7765-01 15 25207298 25207298 G T SNURF Missense_Mutation p.V18L 0.16 tolerated_low_confidence(0.12) benign(0.033) TCGA-69-7765-01 15 25616900 25616900 C A UBE3A Nonsense_Mutation p.E144* 0.11 TCGA-69-7765-01 15 26806156 26806156 C T GABRB3 Missense_Mutation p.G335S 0.16 tolerated(0.07) possibly_damaging(0.902) TCGA-69-7765-01 15 26812798 26812798 T A GABRB3 Silent p.I255I 0.15 TCGA-69-7765-01 15 26812836 26812836 T C GABRB3 Missense_Mutation p.I243V 0.20 tolerated(0.17) probably_damaging(0.998) TCGA-69-7765-01 15 27184577 27184577 G T GABRA5 Intron 0.30 TCGA-69-7765-01 15 31318412 31318412 C A TRPM1 Nonsense_Mutation p.E1204* 0.07 TCGA-69-7765-01 15 33833039 33833039 G C RYR3 Missense_Mutation p.M198I 0.23 benign(0.079) TCGA-69-7765-01 15 33835886 33835886 C A RYR3 Missense_Mutation p.P237Q 0.10 benign(0.096) TCGA-69-7765-01 15 33988537 33988538 - G RYR3 Frame_Shift_Ins p.E1995Gfs*98 0.09 TCGA-69-7765-01 15 34137231 34137231 C A RYR3 Missense_Mutation p.L4489I 0.11 benign(0.142) TCGA-69-7765-01 15 34647285 34647285 C A NUTM1 Missense_Mutation p.P448T 0.14 deleterious(0.03) probably_damaging(0.994) TCGA-69-7765-01 15 34647286 34647286 C A NUTM1 Missense_Mutation p.P448H 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-69-7765-01 15 37184302 37184302 C G MEIS2 3'UTR 0.09 TCGA-69-7765-01 15 40093898 40093898 C A GPR176 Missense_Mutation p.R328L 0.15 deleterious(0) probably_damaging(0.999) TCGA-69-7765-01 15 42727683 42727683 T A ZNF106 Missense_Mutation p.T1571S 0.23 tolerated(0.41) benign(0.024) TCGA-69-7765-01 15 45396433 45396433 A T DUOX2 Missense_Mutation p.M822K 0.12 deleterious(0.01) possibly_damaging(0.663) TCGA-69-7765-01 15 45402891 45402891 C T DUOX2 Silent p.E300E 0.10 TCGA-69-7765-01 15 62300902 62300902 T C VPS13C Missense_Mutation p.Y357C 0.20 deleterious(0) probably_damaging(0.967) TCGA-69-7765-01 15 69682101 69682101 G T PAQR5 Missense_Mutation p.G165V 0.19 tolerated(0.22) probably_damaging(0.987) TCGA-69-7765-01 15 74472534 74472534 C A STRA6 Missense_Mutation p.G670W 0.21 deleterious(0) possibly_damaging(0.609) TCGA-69-7765-01 15 81440257 81440257 G T C15orf26 Missense_Mutation p.R232L 0.06 deleterious(0.02) probably_damaging(1) TCGA-69-7765-01 15 84488657 84488657 G A ADAMTSL3 Missense_Mutation p.R153Q 0.10 tolerated(0.08) benign(0.003) TCGA-69-7765-01 15 84651167 84651167 C A ADAMTSL3 Silent p.S929S 0.16 TCGA-69-7765-01 15 88576128 88576128 C A NTRK3 Missense_Mutation p.Q515H 0.09 deleterious(0) probably_damaging(0.977) TCGA-69-7765-01 15 90176117 90176117 C A KIF7 Silent p.L943L 0.20 TCGA-69-7765-01 15 91510376 91510376 G C PRC1 Silent p.T616T 0.11 TCGA-69-7765-01 15 91551121 91551121 T A VPS33B Missense_Mutation p.E159D 0.17 tolerated(0.33) benign(0.023) TCGA-69-7765-01 15 99669845 99669845 C A SYNM Missense_Mutation p.T426N 0.12 deleterious(0.02) possibly_damaging(0.687) TCGA-69-7765-01 16 10851880 10851880 C T NUBP1 Missense_Mutation p.P201L 0.19 deleterious(0.02) probably_damaging(1) TCGA-69-7765-01 16 14015915 14015915 G A ERCC4 Missense_Mutation p.E79K 0.16 tolerated(0.49) benign(0.119) TCGA-69-7765-01 16 15141948 15141948 G T NTAN1 Silent p.A30A 0.29 TCGA-69-7765-01 16 18847728 18847730 TGT - SMG1 In_Frame_Del p.T2577del 0.17 TCGA-69-7765-01 16 20043438 20043438 G T GPR139 Silent p.T227T 0.11 TCGA-69-7765-01 16 20696590 20696590 G A ACSM1 Nonsense_Mutation p.Q110* 0.11 TCGA-69-7765-01 16 21145668 21145668 C T DNAH3 Missense_Mutation p.V332I 0.16 tolerated(0.1) benign(0.001) TCGA-69-7765-01 16 21728345 21728345 G T OTOA Missense_Mutation p.D536Y 0.23 deleterious(0) possibly_damaging(0.667) TCGA-69-7765-01 16 23359988 23359988 A T SCNN1B Missense_Mutation p.K23M 0.20 deleterious(0) probably_damaging(0.993) TCGA-69-7765-01 16 24202491 24202491 G T PRKCB Silent p.R601R 0.17 TCGA-69-7765-01 16 29909229 29909229 A T SEZ6L2 Silent p.A52A 0.24 TCGA-69-7765-01 16 30390500 30390500 C T SEPT1 Silent p.E260E 0.04 TCGA-69-7765-01 16 31282309 31282309 G T ITGAM Missense_Mutation p.L154F 0.14 deleterious(0) probably_damaging(0.999) TCGA-69-7765-01 16 31388167 31388167 A T ITGAX Silent p.P852P 0.18 TCGA-69-7765-01 16 31885291 31885291 G A ZNF267 Splice_Site p.X1_splice 0.15 TCGA-69-7765-01 16 3293550 3293550 G T MEFV Missense_Mutation p.P646Q 0.20 tolerated(0.06) possibly_damaging(0.836) TCGA-69-7765-01 16 33020669 33020669 C A IGHV3OR16-8 Missense_Mutation p.S26Y 0.18 deleterious_low_confidence(0.01) probably_damaging(0.912) TCGA-69-7765-01 16 3336160 3336160 C G ZNF263 Intron 0.05 TCGA-69-7765-01 16 46958355 46958355 C A GPT2 Missense_Mutation p.L423M 0.20 tolerated(0.27) benign(0.059) TCGA-69-7765-01 16 47117479 47117479 C A NETO2 Missense_Mutation p.D411Y 0.13 deleterious(0) probably_damaging(0.966) TCGA-69-7765-01 16 49764838 49764838 C A ZNF423 Missense_Mutation p.A41S 0.11 tolerated_low_confidence(0.76) benign(0.002) TCGA-69-7765-01 16 50818357 50818357 G C CYLD Silent p.L648L 0.15 TCGA-69-7765-01 16 57073725 57073725 C G NLRC5 Missense_Mutation p.A945G 0.15 deleterious(0.05) benign(0.354) TCGA-69-7765-01 16 57505025 57505025 A T POLR2C Silent p.I274I 0.21 TCGA-69-7765-01 16 67327654 67327654 G T KCTD19 Missense_Mutation p.P671T 0.20 tolerated(0.19) benign(0.001) TCGA-69-7765-01 16 67854847 67854847 C A TSNAXIP1 Silent p.R31R 0.22 TCGA-69-7765-01 16 76481933 76481933 G T CNTNAP4 Missense_Mutation p.G163V 0.23 deleterious(0) probably_damaging(0.959) TCGA-69-7765-01 16 76592451 76592451 G T CNTNAP4 Missense_Mutation p.Q1193H 0.20 deleterious(0.04) possibly_damaging(0.873) TCGA-69-7765-01 16 77775776 77775776 C T NUDT7 Missense_Mutation p.L216F 0.09 tolerated(0.05) possibly_damaging(0.606) TCGA-69-7765-01 16 787273 787273 C A NARFL Silent p.A73A 0.18 TCGA-69-7765-01 16 81232518 81232518 C A PKD1L2 Missense_Mutation p.G431V 0.17 deleterious(0) benign(0.068) TCGA-69-7765-01 16 83711848 83711848 G T CDH13 Silent p.L487L 0.21 TCGA-69-7765-01 16 85946800 85946800 A T IRF8 Missense_Mutation p.S171C 0.15 tolerated(0.08) possibly_damaging(0.471) TCGA-69-7765-01 17 12016657 12016657 G T MAP2K4 Missense_Mutation p.G265C 0.18 deleterious(0) probably_damaging(1) TCGA-69-7765-01 17 25938579 25938579 C T KSR1 Missense_Mutation p.A691V 0.25 tolerated(0.06) benign(0.255) TCGA-69-7765-01 17 27044007 27044007 C G RAB34 Silent p.L77L 0.30 TCGA-69-7765-01 17 27401169 27401169 C A TIAF1 Missense_Mutation p.A17S 0.11 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-69-7765-01 17 29663414 29663414 G T NF1 Nonsense_Mutation p.G2024* 0.12 TCGA-69-7765-01 17 29685986 29685986 G T NF1 Splice_Site p.X2705_splice 0.16 TCGA-69-7765-01 17 29685987 29685987 G T NF1 Missense_Mutation p.S2705I 0.16 deleterious(0) benign(0.231) TCGA-69-7765-01 17 32953535 32953535 T A TMEM132E Missense_Mutation p.W153R 0.38 deleterious(0) possibly_damaging(0.628) TCGA-69-7765-01 17 35733069 35733069 C A C17orf78 Missense_Mutation p.A12E 0.13 deleterious(0.01) benign(0.215) TCGA-69-7765-01 17 39890641 39890641 G T HAP1 Silent p.R82R 0.26 TCGA-69-7765-01 17 39967431 39967431 C A LEPREL4 Missense_Mutation p.D190Y 0.10 deleterious(0) probably_damaging(0.989) TCGA-69-7765-01 17 39967432 39967432 C A LEPREL4 Silent p.L189L 0.10 TCGA-69-7765-01 17 40612870 40612870 G T ATP6V0A1 5'UTR 0.25 TCGA-69-7765-01 17 41004815 41004815 A G AOC3 Missense_Mutation p.I485M 0.16 tolerated(0.11) probably_damaging(0.981) TCGA-69-7765-01 17 42635099 42635099 C A FZD2 Missense_Mutation p.L15M 0.16 deleterious(0.03) unknown(0) TCGA-69-7765-01 17 45811281 45811281 A T TBX21 Missense_Mutation p.Q154L 0.13 deleterious(0) probably_damaging(0.988) TCGA-69-7765-01 17 45904472 45904472 C A MRPL10 Missense_Mutation p.E117D 0.15 tolerated(0.22) benign(0.302) TCGA-69-7765-01 17 5009656 5009656 C T ZNF232 Silent p.L266L 0.27 TCGA-69-7765-01 17 56384267 56384267 G A BZRAP1 Silent p.Y1682Y 0.20 TCGA-69-7765-01 17 57105837 57105837 C A TRIM37 Missense_Mutation p.L732F 0.21 tolerated_low_confidence(0.11) benign(0.014) TCGA-69-7765-01 17 59067346 59067346 C T BCAS3 Silent p.C412C 0.12 TCGA-69-7765-01 17 68128429 68128429 C T KCNJ16 Silent p.D67D 0.20 TCGA-69-7765-01 17 72297275 72297275 G T DNAI2 Missense_Mutation p.G319W 0.20 deleterious(0.01) possibly_damaging(0.77) TCGA-69-7765-01 17 72832430 72832430 C T TMEM104 Silent p.I365I 0.08 TCGA-69-7765-01 17 73263692 73263692 A T MIF4GD Missense_Mutation p.M164K 0.18 tolerated(0.11) possibly_damaging(0.574) TCGA-69-7765-01 17 73847686 73847686 C A WBP2 Missense_Mutation p.G44V 0.18 deleterious(0) probably_damaging(0.996) TCGA-69-7765-01 17 74287225 74287225 C G QRICH2 Missense_Mutation p.E1029Q 0.05 deleterious(0) probably_damaging(0.998) TCGA-69-7765-01 17 7578431 7578431 G A TP53 Nonsense_Mutation p.Q167* 0.21 TCGA-69-7765-01 17 79943454 79943454 G C ASPSCR1 Missense_Mutation p.W115C 0.20 deleterious(0) unknown(0) TCGA-69-7765-01 18 19147950 19147950 T A ESCO1 Nonsense_Mutation p.K546* 0.37 TCGA-69-7765-01 18 19153945 19153945 T C ESCO1 Missense_Mutation p.Q287R 0.33 tolerated(0.24) benign(0.001) TCGA-69-7765-01 18 28654794 28654794 T A DSC2 Silent p.T581T 0.28 TCGA-69-7765-01 18 40503687 40503687 C T RIT2 Silent p.G92G 0.23 TCGA-69-7765-01 18 44260276 44260276 C A ST8SIA5 Missense_Mutation p.R287L 0.12 probably_damaging(1) TCGA-69-7765-01 18 44560930 44560930 G T TCEB3B Missense_Mutation p.P236T 0.23 tolerated(0.2) probably_damaging(0.959) TCGA-69-7765-01 18 48575104 48575104 A T SMAD4 Missense_Mutation p.R100W 0.29 deleterious(0) probably_damaging(0.999) TCGA-69-7765-01 18 61620700 61620700 C T HMSD Missense_Mutation p.S4L 0.17 deleterious(0) probably_damaging(0.994) TCGA-69-7765-01 19 10505933 10505933 T C CDC37 Missense_Mutation p.I192V 0.16 tolerated(0.2) benign(0.02) TCGA-69-7765-01 19 12243512 12243512 C A ZNF20 Nonsense_Mutation p.E497* 0.19 TCGA-69-7765-01 19 15052757 15052757 G T OR7C2 Missense_Mutation p.V153F 0.12 tolerated_low_confidence(0.33) possibly_damaging(0.905) TCGA-69-7765-01 19 17844205 17844205 G T MAP1S Missense_Mutation p.A998S 0.19 tolerated(0.29) probably_damaging(0.994) TCGA-69-7765-01 19 19339151 19339151 C T NCAN Nonsense_Mutation p.Q908* 0.15 TCGA-69-7765-01 19 19356226 19356226 C A NCAN Silent p.P1199P 0.14 TCGA-69-7765-01 19 21926894 21926894 C A ZNF100 Missense_Mutation p.D83Y 0.12 deleterious(0.02) possibly_damaging(0.903) TCGA-69-7765-01 19 22235364 22235364 C T ZNF257 5'UTR 0.21 TCGA-69-7765-01 19 22271929 22271929 C A ZNF257 Nonsense_Mutation p.Y459* 0.14 TCGA-69-7765-01 19 22574916 22574916 C A ZNF98 Missense_Mutation p.G374V 0.15 deleterious(0) probably_damaging(0.966) TCGA-69-7765-01 19 2291185 2291185 C A LINGO3 Silent p.L197L 0.14 TCGA-69-7765-01 19 22940385 22940385 G A ZNF99 Missense_Mutation p.L776F 0.12 tolerated(0.06) probably_damaging(1) TCGA-69-7765-01 19 23329123 23329123 G T ZNF730 Missense_Mutation p.C426F 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-69-7765-01 19 31025863 31025865 CCG T ZNF536 Frame_Shift_Del p.R761Dfs*6 0.15 TCGA-69-7765-01 19 31768982 31768982 G A TSHZ3 Silent p.L573L 0.16 TCGA-69-7765-01 19 31768983 31768983 G T TSHZ3 Silent p.P572P 0.16 TCGA-69-7765-01 19 34263536 34263536 G A CHST8 Silent p.P281P 0.19 TCGA-69-7765-01 19 35646403 35646403 G A FXYD5 5'UTR 0.07 TCGA-69-7765-01 19 35655040 35655040 G T FXYD5 Intron 0.19 TCGA-69-7765-01 19 36205655 36205655 C G ZBTB32 Missense_Mutation p.H43D 0.19 deleterious(0) possibly_damaging(0.841) TCGA-69-7765-01 19 36259083 36259083 G T C19orf55 Missense_Mutation p.R416L 0.24 unknown(0) TCGA-69-7765-01 19 36340164 36340164 G T NPHS1 Missense_Mutation p.P272T 0.11 deleterious(0) probably_damaging(1) TCGA-69-7765-01 19 37117284 37117284 G C ZNF382 Missense_Mutation p.G162A 0.18 tolerated(0.07) benign(0.003) TCGA-69-7765-01 19 39003104 39003104 G T RYR1 Missense_Mutation p.Q3151H 0.18 benign(0.089) TCGA-69-7765-01 19 39303124 39303124 G C LGALS4 Silent p.L27L 0.07 TCGA-69-7765-01 19 39735580 39735580 C G IFNL3 Missense_Mutation p.V10L 0.20 tolerated(0.66) benign(0) TCGA-69-7765-01 19 40978613 40978613 G A SPTBN4 Missense_Mutation p.D29N 0.11 tolerated(0.05) benign(0.26) TCGA-69-7765-01 19 42383065 42383065 G A CD79A Missense_Mutation p.G29R 0.13 tolerated(0.44) benign(0.026) TCGA-69-7765-01 19 4249230 4249230 C G CCDC94 Nonsense_Mutation p.Y10* 0.29 TCGA-69-7765-01 19 42728695 42728695 C T ZNF526 Missense_Mutation p.A47V 0.23 tolerated(0.11) possibly_damaging(0.867) TCGA-69-7765-01 19 44129230 44129230 C A CADM4 Missense_Mutation p.D310Y 0.24 deleterious(0.02) probably_damaging(0.925) TCGA-69-7765-01 19 44933973 44933973 C A ZNF229 Missense_Mutation p.R328L 0.17 tolerated(0.08) benign(0.001) TCGA-69-7765-01 19 45322685 45322685 G T BCAM Missense_Mutation p.G519V 0.19 deleterious(0) probably_damaging(1) TCGA-69-7765-01 19 46318101 46318101 C A RSPH6A Missense_Mutation p.A112S 0.10 tolerated_low_confidence(0.31) benign(0.002) TCGA-69-7765-01 19 49643283 49643283 G A PPFIA3 Missense_Mutation p.R769H 0.19 deleterious(0) probably_damaging(0.998) TCGA-69-7765-01 19 51325023 51325023 C A KLK1 Missense_Mutation p.G51W 0.11 deleterious(0) probably_damaging(0.999) TCGA-69-7765-01 19 51361545 51361545 G T KLK3 Missense_Mutation p.G156V 0.21 deleterious(0) probably_damaging(1) TCGA-69-7765-01 19 51530782 51530782 C T KLK11 5'UTR 0.19 TCGA-69-7765-01 19 52941259 52941259 G A ZNF534 Silent p.R195R 0.08 TCGA-69-7765-01 19 53013861 53013861 C A ZNF578 Nonsense_Mutation p.S76* 0.20 TCGA-69-7765-01 19 53384015 53384015 T G ZNF320 Missense_Mutation p.H455P 0.21 tolerated(0.09) possibly_damaging(0.649) TCGA-69-7765-01 19 53762294 53762294 G A VN1R2 Silent p.L222L 0.10 TCGA-69-7765-01 19 53770608 53770608 A G VN1R4 Missense_Mutation p.F104S 0.07 tolerated(0.08) possibly_damaging(0.901) TCGA-69-7765-01 19 55048116 55048116 C A KIR3DX1 Missense_Mutation p.T228N 0.21 deleterious(0) probably_damaging(0.985) TCGA-69-7765-01 19 55451341 55451341 G T NLRP7 Silent p.L282L 0.12 TCGA-69-7765-01 19 55918297 55918297 T A UBE2S Missense_Mutation p.I13F 0.13 deleterious(0) possibly_damaging(0.463) TCGA-69-7765-01 19 56443440 56443440 G T NLRP13 Missense_Mutation p.Q80K 0.12 tolerated(0.12) possibly_damaging(0.581) TCGA-69-7765-01 19 56538871 56538871 C A NLRP5 Silent p.P424P 0.15 TCGA-69-7765-01 19 57133482 57133482 G T ZNF71 Missense_Mutation p.G276V 0.11 deleterious(0) probably_damaging(0.999) TCGA-69-7765-01 19 57326551 57326551 G T PEG3 Missense_Mutation p.P1087T 0.13 tolerated(0.76) benign(0.002) TCGA-69-7765-01 19 5783136 5783136 G A PRR22 Silent p.T374T 0.19 TCGA-69-7765-01 19 58190216 58190216 G A ZSCAN4 Missense_Mutation p.M415I 0.10 tolerated(0.1) benign(0.013) TCGA-69-7765-01 19 58198259 58198259 C T ZNF551 Missense_Mutation p.H206Y 0.23 tolerated(0.13) benign(0.01) TCGA-69-7765-01 19 58213959 58213959 T A ZNF154 Missense_Mutation p.S120C 0.21 deleterious(0.04) benign(0.189) TCGA-69-7765-01 19 58485792 58485792 C A C19orf18 Missense_Mutation p.K3N 0.13 deleterious(0.01) possibly_damaging(0.895) TCGA-69-7765-01 19 6590996 6590996 C A CD70 Silent p.S6S 0.30 TCGA-69-7765-01 19 7688058 7688058 C T XAB2 Missense_Mutation p.D413N 0.07 tolerated(0.76) benign(0.269) TCGA-69-7765-01 19 9003616 9003616 G A MUC16 Missense_Mutation p.R13342C 0.04 possibly_damaging(0.607) TCGA-69-7765-01 19 9077685 9077685 C A MUC16 Missense_Mutation p.S3254I 0.16 unknown(0) TCGA-69-7765-01 19 9225675 9225675 A T OR7G1 Silent p.A255A 0.15 TCGA-69-7765-01 1 10511509 10511509 C G CORT Missense_Mutation p.Q59E 0.08 deleterious(0.01) benign(0.027) TCGA-69-7765-01 1 109538225 109538225 C A WDR47 Missense_Mutation p.E564D 0.10 tolerated(0.33) benign(0.001) TCGA-69-7765-01 1 110038606 110038606 G A CYB561D1 Missense_Mutation p.A161T 0.11 tolerated(0.41) benign(0.062) TCGA-69-7765-01 1 11078853 11078853 G A TARDBP Missense_Mutation p.E156K 0.17 deleterious(0.03) benign(0.445) TCGA-69-7765-01 1 118065453 118065453 G A MAN1A2 Silent p.L600L 0.09 TCGA-69-7765-01 1 118635849 118635849 C G SPAG17 Missense_Mutation p.S368T 0.25 tolerated(0.05) possibly_damaging(0.547) TCGA-69-7765-01 1 120466285 120466285 C T NOTCH2 Missense_Mutation p.G1612S 0.14 tolerated(0.13) benign(0) TCGA-69-7765-01 1 144882694 144882694 G T PDE4DIP Missense_Mutation p.L1109M 0.25 tolerated(0.09) probably_damaging(1) TCGA-69-7765-01 1 147096596 147096596 G A BCL9 Missense_Mutation p.G1373R 0.11 tolerated(0.1) probably_damaging(0.999) TCGA-69-7765-01 1 149895789 149895789 G C SF3B4 Missense_Mutation p.P344R 0.13 tolerated(0.66) unknown(0) TCGA-69-7765-01 1 151157999 151157999 T A VPS72 Missense_Mutation p.Q123L 0.14 tolerated(0.2) benign(0.316) TCGA-69-7765-01 1 151337030 151337030 T G SELENBP1 Missense_Mutation p.I470L 0.14 deleterious(0) probably_damaging(0.967) TCGA-69-7765-01 1 152191695 152191695 A T HRNR Missense_Mutation p.C804S 0.16 unknown(0) TCGA-69-7765-01 1 152281967 152281967 C T FLG Missense_Mutation p.D1799N 0.06 possibly_damaging(0.539) TCGA-69-7765-01 1 152283290 152283290 C T FLG Missense_Mutation p.G1358R 0.12 probably_damaging(0.988) TCGA-69-7765-01 1 152328162 152328162 T G FLG2 Silent p.S700S 0.12 TCGA-69-7765-01 1 152777708 152777708 G A LCE1C Missense_Mutation p.R83C 0.10 deleterious_low_confidence(0.05) unknown(0) TCGA-69-7765-01 1 152777762 152777762 C A LCE1C Missense_Mutation p.G65W 0.07 deleterious_low_confidence(0.05) unknown(0) TCGA-69-7765-01 1 154744758 154744758 C A KCNN3 Nonsense_Mutation p.E381* 0.09 TCGA-69-7765-01 1 155330133 155330133 T A ASH1L Missense_Mutation p.T2252S 0.06 tolerated_low_confidence(0.07) probably_damaging(0.996) TCGA-69-7765-01 1 156222835 156222835 T A SMG5 Missense_Mutation p.Q846L 0.12 tolerated(0.09) possibly_damaging(0.713) TCGA-69-7765-01 1 156642334 156642334 A G NES Missense_Mutation p.L549P 0.44 tolerated(0.16) benign(0.048) TCGA-69-7765-01 1 158325717 158325717 G A CD1E Silent p.V242V 0.07 TCGA-69-7765-01 1 158623125 158623125 G A SPTA1 Missense_Mutation p.P1043S 0.17 tolerated(1) possibly_damaging(0.798) TCGA-69-7765-01 1 159832278 159832278 C A VSIG8 Missense_Mutation p.V12L 0.07 tolerated(0.32) benign(0.003) TCGA-69-7765-01 1 160164819 160164819 G A CASQ1 Silent p.V161V 0.10 TCGA-69-7765-01 1 160797585 160797585 T A LY9 Silent p.P649P 0.10 TCGA-69-7765-01 1 161059087 161059087 G A PVRL4 5'UTR 0.48 TCGA-69-7765-01 1 162337182 162337182 G T NOS1AP Missense_Mutation p.E482D 0.62 tolerated_low_confidence(0.34) benign(0.009) TCGA-69-7765-01 1 165322350 165322350 G T LMX1A Silent p.R76R 0.10 TCGA-69-7765-01 1 166985467 166985467 G C MAEL Missense_Mutation p.W285S 0.38 deleterious(0) probably_damaging(0.953) TCGA-69-7765-01 1 171509543 171509543 G A PRRC2C Missense_Mutation p.G978R 0.50 unknown(0) TCGA-69-7765-01 1 173949963 173949963 T A RC3H1 Missense_Mutation p.Q318L 0.29 deleterious(0) benign(0.043) TCGA-69-7765-01 1 175375626 175375626 C A TNR Missense_Mutation p.L75F 0.10 deleterious(0.01) possibly_damaging(0.873) TCGA-69-7765-01 1 177001936 177001936 A T ASTN1 Missense_Mutation p.L174Q 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-69-7765-01 1 177242683 177242683 C T BRINP2 Silent p.V243V 0.16 TCGA-69-7765-01 1 177250364 177250364 G T BRINP2 Missense_Mutation p.Q684H 0.14 deleterious(0) possibly_damaging(0.77) TCGA-69-7765-01 1 179504063 179504063 G T AXDND1 Missense_Mutation p.R999S 0.08 tolerated(0.18) unknown(0) TCGA-69-7765-01 1 179504064 179504064 T A AXDND1 Missense_Mutation p.S1000T 0.09 tolerated(0.59) unknown(0) TCGA-69-7765-01 1 181705478 181705478 G T CACNA1E Missense_Mutation p.E1110D 0.28 tolerated(0.58) benign(0.003) TCGA-69-7765-01 1 186909147 186909147 A T PLA2G4A Missense_Mutation p.K318N 0.15 deleterious(0.04) possibly_damaging(0.875) TCGA-69-7765-01 1 190068084 190068084 G T BRINP3 Missense_Mutation p.D455E 0.36 tolerated(0.58) probably_damaging(0.991) TCGA-69-7765-01 1 192153519 192153519 T A RGS18 Nonsense_Mutation p.Y181* 0.11 TCGA-69-7765-01 1 19474558 19474558 T A UBR4 Missense_Mutation p.S2520C 0.12 benign(0.009) TCGA-69-7765-01 1 196227384 196227384 C A KCNT2 Nonsense_Mutation p.E1051* 0.47 TCGA-69-7765-01 1 197070775 197070775 C A ASPM Missense_Mutation p.V2536F 0.05 tolerated(0.29) probably_damaging(0.956) TCGA-69-7765-01 1 197073662 197073662 T C ASPM Silent p.R1573R 0.22 TCGA-69-7765-01 1 197390932 197390932 C A CRB1 Silent p.I658I 0.12 TCGA-69-7765-01 1 198721820 198721820 T C PTPRC Missense_Mutation p.V1143A 0.35 tolerated(0.28) benign(0.006) TCGA-69-7765-01 1 200522757 200522757 T A KIF14 Missense_Mutation p.Q1569L 0.45 tolerated(0.29) benign(0.013) TCGA-69-7765-01 1 201869373 201869373 T C LMOD1 Silent p.K256K 0.26 TCGA-69-7765-01 1 205495550 205495550 C T CDK18 Silent p.I239I 0.03 TCGA-69-7765-01 1 207198390 207198390 A C C1orf116 Missense_Mutation p.F42C 0.37 deleterious(0) probably_damaging(0.986) TCGA-69-7765-01 1 207265092 207265092 C T C4BPB Silent p.I112I 0.08 TCGA-69-7765-01 1 210761424 210761424 C T HHAT Missense_Mutation p.P410L 0.50 deleterious(0) possibly_damaging(0.462) TCGA-69-7765-01 1 210971016 210971016 C A KCNH1 Silent p.R583R 0.48 TCGA-69-7765-01 1 212180034 212180034 G A INTS7 Silent p.L276L 0.06 TCGA-69-7765-01 1 215368369 215368369 C A KCNK2 Nonsense_Mutation p.Y299* 0.10 TCGA-69-7765-01 1 216500977 216500977 T A USH2A Silent p.G268G 0.38 TCGA-69-7765-01 1 228033677 228033677 T C PRSS38 Missense_Mutation p.V250A 0.05 deleterious(0.04) possibly_damaging(0.721) TCGA-69-7765-01 1 229773083 229773083 G T URB2 Missense_Mutation p.S908I 0.10 deleterious(0) possibly_damaging(0.467) TCGA-69-7765-01 1 23418999 23418999 T G LUZP1 Missense_Mutation p.N586H 0.15 tolerated(0.06) possibly_damaging(0.632) TCGA-69-7765-01 1 236399088 236399088 C A ERO1LB Splice_Site p.X225_splice 0.47 TCGA-69-7765-01 1 237947492 237947492 G T RYR2 Missense_Mutation p.W4160C 0.07 probably_damaging(0.999) TCGA-69-7765-01 1 240371243 240371243 C A FMN2 Missense_Mutation p.P1044Q 0.28 unknown(0) TCGA-69-7765-01 1 24421445 24421445 C A MYOM3 Missense_Mutation p.V276L 0.29 tolerated(0.28) benign(0.014) TCGA-69-7765-01 1 247614852 247614852 A C OR2B11 Missense_Mutation p.C145G 0.09 deleterious(0) benign(0.341) TCGA-69-7765-01 1 247654948 247654948 G T OR2W5 RNA 0.17 TCGA-69-7765-01 1 247694880 247694880 C A OR2C3 Missense_Mutation p.G312C 0.16 deleterious(0) possibly_damaging(0.67) TCGA-69-7765-01 1 248039556 248039556 G T TRIM58 Missense_Mutation p.R409L 0.10 tolerated(0.06) possibly_damaging(0.644) TCGA-69-7765-01 1 248059502 248059502 G T OR2W3 Missense_Mutation p.G205V 0.08 tolerated(0.73) benign(0.006) TCGA-69-7765-01 1 248129115 248129115 C A OR2AK2 Missense_Mutation p.A161E 0.07 deleterious(0.05) possibly_damaging(0.491) TCGA-69-7765-01 1 248201698 248201698 C A OR2L2 Silent p.S43S 0.10 TCGA-69-7765-01 1 248263103 248263103 G T OR2L13 Missense_Mutation p.K142N 0.07 deleterious(0.04) benign(0.007) TCGA-69-7765-01 1 248263467 248263467 C A OR2L13 Missense_Mutation p.L264I 0.30 deleterious(0.03) possibly_damaging(0.488) TCGA-69-7765-01 1 248344072 248344072 C A OR2M2 Missense_Mutation p.P262H 0.10 deleterious(0) probably_damaging(0.994) TCGA-69-7765-01 1 248344078 248344078 C A OR2M2 Missense_Mutation p.S264Y 0.11 deleterious(0.03) possibly_damaging(0.768) TCGA-69-7765-01 1 248366722 248366722 T A OR2M3 Missense_Mutation p.M118K 0.14 deleterious(0) possibly_damaging(0.891) TCGA-69-7765-01 1 248458527 248458527 A G OR2T12 Silent p.Y118Y 0.25 TCGA-69-7765-01 1 248616713 248616713 G T OR2T2 Silent p.V205V 0.31 TCGA-69-7765-01 1 248616714 248616714 C A OR2T2 Missense_Mutation p.L206M 0.29 tolerated(0.13) possibly_damaging(0.9) TCGA-69-7765-01 1 2489852 2489852 C T TNFRSF14 Silent p.Y83Y 0.11 TCGA-69-7765-01 1 35334520 35334520 G T DLGAP3 Missense_Mutation p.T724N 0.14 deleterious(0.04) benign(0.037) TCGA-69-7765-01 1 38227478 38227478 C T EPHA10 Missense_Mutation p.R150H 0.19 tolerated(0.52) benign(0.012) TCGA-69-7765-01 1 45474317 45474317 C - HECTD3 Frame_Shift_Del p.E377Nfs*2 0.13 TCGA-69-7765-01 1 48713140 48713140 C T SLC5A9 Silent p.L682L 0.04 TCGA-69-7765-01 1 57420395 57420395 A G C8B Missense_Mutation p.M166T 0.12 tolerated(0.14) benign(0.06) TCGA-69-7765-01 1 6211173 6211173 T A CHD5 Missense_Mutation p.S305C 0.19 deleterious(0) probably_damaging(0.928) TCGA-69-7765-01 1 6586755 6586755 C A NOL9 Splice_Site p.X653_splice 0.12 TCGA-69-7765-01 1 66829200 66829200 C A PDE4B Missense_Mutation p.H410Q 0.13 deleterious(0.02) possibly_damaging(0.655) TCGA-69-7765-01 1 67147567 67147567 C A SGIP1 Missense_Mutation p.A277D 0.13 deleterious_low_confidence(0.03) benign(0.025) TCGA-69-7765-01 1 67724488 67724488 A T IL23R Missense_Mutation p.R523W 0.33 tolerated(0.19) probably_damaging(0.938) TCGA-69-7765-01 1 78958727 78958727 G T PTGFR Missense_Mutation p.R100L 0.06 tolerated(0.24) benign(0.209) TCGA-69-7765-01 1 8395557 8395557 C T SLC45A1 Missense_Mutation p.R502C 0.06 tolerated(0.05) benign(0.146) TCGA-69-7765-01 1 89735212 89735212 G T GBP5 Missense_Mutation p.D9E 0.11 tolerated(0.67) benign(0.001) TCGA-69-7765-01 1 99764761 99764761 G C LPPR4 Missense_Mutation p.D237H 0.23 deleterious(0) probably_damaging(1) TCGA-69-7765-01 20 10644641 10644641 C A JAG1 Nonsense_Mutation p.E137* 0.18 TCGA-69-7765-01 20 13610663 13610663 C A TASP1 Silent p.S21S 0.13 TCGA-69-7765-01 20 16485072 16485072 C A KIF16B Missense_Mutation p.R374L 0.18 deleterious(0) probably_damaging(0.999) TCGA-69-7765-01 20 1902288 1902288 C A SIRPA Nonsense_Mutation p.C228* 0.15 TCGA-69-7765-01 20 24646039 24646039 G T SYNDIG1 Missense_Mutation p.A226S 0.15 deleterious(0.01) possibly_damaging(0.686) TCGA-69-7765-01 20 24646210 24646210 C A SYNDIG1 3'UTR 0.18 TCGA-69-7765-01 20 25456791 25456791 C - NINL Frame_Shift_Del p.E1046Rfs*4 0.13 TCGA-69-7765-01 20 3211846 3211846 G T SLC4A11 Silent p.R374R 0.16 TCGA-69-7765-01 20 3211888 3211888 G A SLC4A11 Missense_Mutation p.P360S 0.33 tolerated(0.29) possibly_damaging(0.559) TCGA-69-7765-01 20 33068418 33068418 G T ITCH Silent p.G652G 0.22 TCGA-69-7765-01 20 33345462 33345462 T G NCOA6 Missense_Mutation p.L363F 0.20 probably_damaging(0.997) TCGA-69-7765-01 20 34090820 34090820 G C CEP250 Missense_Mutation p.Q1541H 0.08 probably_damaging(0.999) TCGA-69-7765-01 20 39813790 39813790 T C ZHX3 3'UTR 0.27 TCGA-69-7765-01 20 43851221 43851221 C A SEMG2 Silent p.I316I 0.18 TCGA-69-7765-01 20 44507109 44507109 C A ZSWIM3 Missense_Mutation p.L638M 0.09 deleterious(0.01) probably_damaging(0.933) TCGA-69-7765-01 20 44540106 44540106 G T PLTP 5'UTR 0.14 TCGA-69-7765-01 20 44567633 44567633 G A PCIF1 5'UTR 0.12 TCGA-69-7765-01 20 52773741 52773741 G A CYP24A1 Missense_Mutation p.P508S 0.15 tolerated(0.15) probably_damaging(1) TCGA-69-7765-01 20 55910890 55910890 A - SPO11 Frame_Shift_Del p.D226Mfs*8 0.20 TCGA-69-7765-01 20 57769423 57769423 G T ZNF831 Missense_Mutation p.G1117W 0.16 deleterious(0.01) probably_damaging(0.977) TCGA-69-7765-01 20 5903076 5903076 C A CHGB Missense_Mutation p.H96N 0.20 deleterious(0.04) benign(0.025) TCGA-69-7765-01 20 60885062 60885062 G A LAMA5 Nonsense_Mutation p.Q3604* 0.11 TCGA-69-7765-01 20 61391515 61391515 G T NTSR1 Missense_Mutation p.V385L 0.19 tolerated(0.45) benign(0) TCGA-69-7765-01 20 61957465 61957465 G T COL20A1 Missense_Mutation p.E1140D 0.14 tolerated(0.08) probably_damaging(0.998) TCGA-69-7765-01 20 8713960 8713960 T C PLCB1 Missense_Mutation p.M655T 0.18 deleterious(0) probably_damaging(1) TCGA-69-7765-01 20 9561032 9561032 C T PAK7 Silent p.L250L 0.13 TCGA-69-7765-01 21 10862905 10862905 G T IGHV1OR21-1 Missense_Mutation p.M67I 0.15 tolerated(0.97) benign(0.089) TCGA-69-7765-01 21 27328036 27328036 C T APP Missense_Mutation p.V498I 0.30 tolerated(0.1) benign(0.437) TCGA-69-7765-01 21 32253347 32253347 C A KRTAP11-1 3'UTR 0.15 TCGA-69-7765-01 21 32410681 32410681 C A KRTAP19-8 Missense_Mutation p.G28C 0.14 deleterious_low_confidence(0.03) unknown(0) TCGA-69-7765-01 21 32526654 32526654 G A TIAM1 Nonsense_Mutation p.Q1028* 0.06 TCGA-69-7765-01 21 46319066 46319066 C T ITGB2 Silent p.S303S 0.16 TCGA-69-7765-01 22 16449068 16449068 C A OR11H1 Missense_Mutation p.S246I 0.22 deleterious(0) benign(0.1) TCGA-69-7765-01 22 17619447 17619447 C A CECR5 Missense_Mutation p.A310S 0.16 deleterious(0) possibly_damaging(0.862) TCGA-69-7765-01 22 21991000 21991000 C T CCDC116 Missense_Mutation p.R495W 0.20 tolerated(1) benign(0) TCGA-69-7765-01 22 24145550 24145550 G T SMARCB1 Missense_Mutation p.R190L 0.20 deleterious(0) probably_damaging(0.983) TCGA-69-7765-01 22 26423231 26423231 C A MYO18B Missense_Mutation p.L2431I 0.18 deleterious(0.01) benign(0.165) TCGA-69-7765-01 22 26776324 26776324 C A SEZ6L 3'UTR 0.16 TCGA-69-7765-01 22 26899709 26899709 C T TFIP11 Missense_Mutation p.G191R 0.14 deleterious(0) probably_damaging(0.998) TCGA-69-7765-01 22 30762169 30762169 C T CCDC157 Silent p.D60D 0.12 TCGA-69-7765-01 22 30863060 30863060 C A SEC14L3 Missense_Mutation p.G143V 0.19 deleterious(0) probably_damaging(1) TCGA-69-7765-01 22 31491288 31491288 G C SMTN Splice_Site p.X545_splice 0.07 TCGA-69-7765-01 22 38465057 38465057 C T PICK1 Missense_Mutation p.H123Y 0.13 deleterious(0) probably_damaging(0.983) TCGA-69-7765-01 22 40745906 40745907 AG T ADSL Frame_Shift_Del p.K75Ifs*14 0.20 TCGA-69-7765-01 22 42605808 42605808 C A TCF20 Missense_Mutation p.G1835V 0.25 probably_damaging(0.969) TCGA-69-7765-01 22 43735195 43735195 G A SCUBE1 Silent p.H45H 0.10 TCGA-69-7765-01 22 46345813 46345813 T A WNT7B Missense_Mutation p.Q95H 0.17 tolerated(1) benign(0.053) TCGA-69-7765-01 22 50716158 50716158 G A PLXNB2 Silent p.L1686L 0.05 TCGA-69-7765-01 2 103299909 103299909 G T SLC9A2 Silent p.L398L 0.20 TCGA-69-7765-01 2 103335097 103335097 C T MFSD9 Missense_Mutation p.G403S 0.15 tolerated(0.07) possibly_damaging(0.852) TCGA-69-7765-01 2 105858977 105858977 C T GPR45 Missense_Mutation p.T221M 0.17 deleterious(0) probably_damaging(0.932) TCGA-69-7765-01 2 105858998 105858998 G T GPR45 Missense_Mutation p.R228L 0.12 deleterious(0) possibly_damaging(0.859) TCGA-69-7765-01 2 108622574 108622574 C A SLC5A7 Missense_Mutation p.Q271K 0.22 tolerated(0.13) benign(0.326) TCGA-69-7765-01 2 109352623 109352623 G T RANBP2 Missense_Mutation p.D234Y 0.13 deleterious(0) benign(0.265) TCGA-69-7765-01 2 125555898 125555898 G T CNTNAP5 Splice_Site p.X1072_splice 0.15 TCGA-69-7765-01 2 128335860 128335860 G T MYO7B Missense_Mutation p.M334I 0.18 deleterious(0.04) benign(0.004) TCGA-69-7765-01 2 130931107 130931107 C A SMPD4 Silent p.V122V 0.16 TCGA-69-7765-01 2 136630325 136630325 C T MCM6 Missense_Mutation p.V66M 0.16 tolerated(0.13) benign(0.002) TCGA-69-7765-01 2 152507090 152507090 C G NEB Missense_Mutation p.E2409Q 0.06 possibly_damaging(0.871) TCGA-69-7765-01 2 162273430 162273430 C T TBR1 Missense_Mutation p.P170L 0.18 deleterious(0.01) probably_damaging(0.981) TCGA-69-7765-01 2 167138188 167138188 C A SCN9A Splice_Site p.X691_splice 0.15 TCGA-69-7765-01 2 173333936 173333936 G T ITGA6 Silent p.L157L 0.25 TCGA-69-7765-01 2 179404688 179404688 G T TTN Missense_Mutation p.P32702T 0.12 TCGA-69-7765-01 2 179458737 179458737 C A TTN Silent p.V19461V 0.24 TCGA-69-7765-01 2 179462319 179462319 G T TTN Missense_Mutation p.L19164I 0.14 TCGA-69-7765-01 2 179575482 179575482 G T TTN Missense_Mutation p.L9448M 0.16 TCGA-69-7765-01 2 179641604 179641604 G A TTN Missense_Mutation p.P1663S 0.22 TCGA-69-7765-01 2 179641605 179641605 G A TTN Silent p.I1662I 0.22 TCGA-69-7765-01 2 185803770 185803770 A G ZNF804A 3'UTR 0.20 TCGA-69-7765-01 2 187626597 187626597 G T FAM171B Missense_Mutation p.D510Y 0.22 deleterious(0.01) possibly_damaging(0.46) TCGA-69-7765-01 2 187627401 187627401 G T FAM171B Nonsense_Mutation p.E778* 0.19 TCGA-69-7765-01 2 18766133 18766133 G A NT5C1B Nonsense_Mutation p.Q184* 0.27 TCGA-69-7765-01 2 190541343 190541343 A G ANKAR Missense_Mutation p.I43V 0.25 tolerated(1) benign(0.001) TCGA-69-7765-01 2 197184311 197184311 T A HECW2 Missense_Mutation p.T435S 0.22 tolerated_low_confidence(0.95) benign(0) TCGA-69-7765-01 2 206869966 206869966 C G INO80D Missense_Mutation p.R737P 0.24 tolerated_low_confidence(0.1) possibly_damaging(0.844) TCGA-69-7765-01 2 206911327 206911327 C G INO80D Missense_Mutation p.W325S 0.21 tolerated(0.1) benign(0.059) TCGA-69-7765-01 2 206921201 206921201 C G INO80D Missense_Mutation p.V229L 0.21 tolerated_low_confidence(0.88) benign(0) TCGA-69-7765-01 2 207509178 207509178 G T AC010731.4 RNA 0.14 TCGA-69-7765-01 2 208994205 208994205 C A CRYGC Missense_Mutation p.G71V 0.19 deleterious(0) probably_damaging(0.995) TCGA-69-7765-01 2 210560504 210560504 A T MAP2 Missense_Mutation p.S1204C 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.886) TCGA-69-7765-01 2 21233305 21233305 G T APOB Silent p.L2145L 0.33 TCGA-69-7765-01 2 220247885 220247885 C A DNPEP Missense_Mutation p.V302L 0.21 deleterious(0.01) possibly_damaging(0.61) TCGA-69-7765-01 2 225639826 225639826 G T DOCK10 Missense_Mutation p.P1937T 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-69-7765-01 2 226378343 226378343 A T NYAP2 Missense_Mutation p.S160C 0.12 deleterious(0.03) possibly_damaging(0.669) TCGA-69-7765-01 2 241463418 241463418 C A ANKMY1 Missense_Mutation p.Q483H 0.21 tolerated(0.17) benign(0.03) TCGA-69-7765-01 2 241468821 241468821 T A ANKMY1 Missense_Mutation p.T107S 0.21 tolerated(0.13) benign(0.081) TCGA-69-7765-01 2 242590432 242590432 G T ATG4B Silent p.L6L 0.23 TCGA-69-7765-01 2 26706361 26706361 G T OTOF Missense_Mutation p.P454H 0.20 deleterious(0) probably_damaging(1) TCGA-69-7765-01 2 27354694 27354694 G A PREB Silent p.L335L 0.04 TCGA-69-7765-01 2 27850292 27850292 C G CCDC121 Missense_Mutation p.Q287H 0.04 tolerated(0.07) probably_damaging(0.963) TCGA-69-7765-01 2 29006832 29006832 G A PPP1CB Missense_Mutation p.V194I 0.14 tolerated_low_confidence(0.31) benign(0.023) TCGA-69-7765-01 2 33413810 33413810 C G LTBP1 Silent p.T531T 0.25 TCGA-69-7765-01 2 33500974 33500974 G T LTBP1 Missense_Mutation p.Q992H 0.13 deleterious(0.05) possibly_damaging(0.516) TCGA-69-7765-01 2 42556062 42556062 A G EML4 Missense_Mutation p.N793S 0.17 deleterious(0) probably_damaging(0.987) TCGA-69-7765-01 2 55912159 55912159 C A PNPT1 Missense_Mutation p.A108S 0.13 deleterious(0.03) probably_damaging(0.951) TCGA-69-7765-01 2 60687738 60687738 T C BCL11A Missense_Mutation p.Y770C 0.16 deleterious(0) probably_damaging(0.999) TCGA-69-7765-01 2 61712950 61712950 G C XPO1 Missense_Mutation p.Q821E 0.09 tolerated(0.92) benign(0.003) TCGA-69-7765-01 2 68415789 68415789 C A PPP3R1 Missense_Mutation p.R26I 0.28 deleterious(0) probably_damaging(0.991) TCGA-69-7765-01 2 68873314 68873314 G A PROKR1 Missense_Mutation p.D121N 0.15 deleterious(0.01) possibly_damaging(0.839) TCGA-69-7765-01 2 70524579 70524579 T A FAM136A Missense_Mutation p.N87Y 0.20 deleterious(0) probably_damaging(0.926) TCGA-69-7765-01 2 71780294 71780294 C G DYSF Missense_Mutation p.Q654E 0.04 tolerated(0.07) possibly_damaging(0.82) TCGA-69-7765-01 2 73868053 73868053 C A NAT8 3'UTR 0.18 TCGA-69-7765-01 2 74745595 74745595 C T DQX1 Missense_Mutation p.R711K 0.19 tolerated(0.88) benign(0.002) TCGA-69-7765-01 2 77746718 77746718 C G LRRTM4 Missense_Mutation p.D93H 0.16 deleterious(0) probably_damaging(1) TCGA-69-7765-01 2 79385829 79385829 C A REG3A Missense_Mutation p.G48V 0.22 deleterious(0.03) probably_damaging(0.931) TCGA-69-7765-01 2 89326802 89326802 C A IGKV3-11 Missense_Mutation p.A71S 0.16 deleterious(0.04) benign(0.184) TCGA-69-7765-01 2 90154099 90154099 G T IGKV3D-15 Missense_Mutation p.Q62H 0.17 deleterious(0.01) possibly_damaging(0.894) TCGA-69-7765-01 2 90198911 90198911 C A IGKV1D-12 Silent p.I24I 0.21 TCGA-69-7765-01 3 107096967 107096967 C A CCDC54 Missense_Mutation p.T178N 0.29 deleterious(0.01) probably_damaging(0.967) TCGA-69-7765-01 3 108363053 108363053 A T DZIP3 Missense_Mutation p.H395L 0.24 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-69-7765-01 3 118870133 118870133 G T C3orf30 Missense_Mutation p.Q535H 0.09 deleterious(0) probably_damaging(0.977) TCGA-69-7765-01 3 119367326 119367326 G A POPDC2 Missense_Mutation p.L264F 0.11 deleterious(0.01) probably_damaging(1) TCGA-69-7765-01 3 122645471 122645471 G T SEMA5B Silent p.R356R 0.23 TCGA-69-7765-01 3 124438088 124438088 C A RP11-71H17.7 5'Flank 0.17 TCGA-69-7765-01 3 12645693 12645693 G A RAF1 Missense_Mutation p.S259F 0.06 deleterious(0) probably_damaging(0.977) TCGA-69-7765-01 3 130400427 130400427 C A PIK3R4 Missense_Mutation p.G1206C 0.08 deleterious(0) probably_damaging(0.997) TCGA-69-7765-01 3 132378551 132378551 C A ACAD11 Silent p.L15L 0.06 TCGA-69-7765-01 3 132416140 132416140 T A NPHP3 Missense_Mutation p.E684D 0.21 tolerated(0.09) probably_damaging(0.931) TCGA-69-7765-01 3 13438872 13438872 C A NUP210 Missense_Mutation p.A141S 0.18 deleterious(0) probably_damaging(0.987) TCGA-69-7765-01 3 141011153 141011153 C T ACPL2 Silent p.I183I 0.24 TCGA-69-7765-01 3 147128661 147128661 G T ZIC1 Silent p.T254T 0.07 TCGA-69-7765-01 3 14798905 14798905 C A C3orf20 Silent p.P656P 0.22 TCGA-69-7765-01 3 151156248 151156248 C A IGSF10 Missense_Mutation p.R2034I 0.13 deleterious(0.03) benign(0.013) TCGA-69-7765-01 3 151161241 151161241 G A IGSF10 Silent p.L1832L 0.18 TCGA-69-7765-01 3 165547998 165547998 G T BCHE Missense_Mutation p.A275D 0.07 deleterious(0) probably_damaging(0.999) TCGA-69-7765-01 3 169637306 169637306 T A SAMD7 Nonsense_Mutation p.L7* 0.17 TCGA-69-7765-01 3 179292203 179292203 G C ACTL6A Missense_Mutation p.E142Q 0.12 deleterious(0) possibly_damaging(0.816) TCGA-69-7765-01 3 183975374 183975374 G T ECE2 Missense_Mutation p.V104L 0.29 deleterious_low_confidence(0.01) benign(0.003) TCGA-69-7765-01 3 185376161 185376161 G A IGF2BP2 Missense_Mutation p.H413Y 0.10 tolerated(1) benign(0.081) TCGA-69-7765-01 3 186512499 186512499 G A RFC4 Nonsense_Mutation p.R120* 0.19 TCGA-69-7765-01 3 194062715 194062715 C T CPN2 Silent p.Q239Q 0.15 TCGA-69-7765-01 3 35835217 35835217 G A ARPP21 Missense_Mutation p.G737R 0.09 deleterious(0) possibly_damaging(0.667) TCGA-69-7765-01 3 38348825 38348825 C T SLC22A14 Silent p.L199L 0.11 TCGA-69-7765-01 3 38639443 38639443 C T SCN5A Missense_Mutation p.R680H 0.14 tolerated(0.48) benign(0.002) TCGA-69-7765-01 3 38770075 38770075 G T SCN10A Nonsense_Mutation p.C866* 0.21 TCGA-69-7765-01 3 38835477 38835477 C T SCN10A Missense_Mutation p.E9K 0.12 tolerated(0.11) benign(0.102) TCGA-69-7765-01 3 42734344 42734344 T A HHATL Missense_Mutation p.I472F 0.06 tolerated(0.17) benign(0.1) TCGA-69-7765-01 3 439977 439977 G T CHL1 Missense_Mutation p.E1054D 0.24 tolerated(0.29) benign(0.025) TCGA-69-7765-01 3 44612228 44612228 G T ZKSCAN7 Missense_Mutation p.Q542H 0.08 tolerated(0.06) probably_damaging(0.988) TCGA-69-7765-01 3 44929264 44929264 C A TGM4 Missense_Mutation p.L93I 0.21 tolerated(1) benign(0.02) TCGA-69-7765-01 3 44952822 44952822 C A TGM4 Missense_Mutation p.L613M 0.07 deleterious(0.03) probably_damaging(1) TCGA-69-7765-01 3 48421036 48421036 T C FBXW12 Silent p.R254R 0.08 TCGA-69-7765-01 3 48619155 48619155 C A COL7A1 Missense_Mutation p.G1569V 0.18 unknown(0) TCGA-69-7765-01 3 48628112 48628112 G A COL7A1 Missense_Mutation p.R592C 0.29 unknown(0) TCGA-69-7765-01 3 49847796 49847796 C A UBA7 Silent p.P511P 0.17 TCGA-69-7765-01 3 64633707 64633707 C A ADAMTS9 Missense_Mutation p.R540L 0.20 deleterious(0) probably_damaging(0.996) TCGA-69-7765-01 3 98001766 98001766 C T OR5H2 Missense_Mutation p.T12I 0.15 deleterious(0.01) probably_damaging(0.96) TCGA-69-7765-01 4 114153409 114153409 T A ANK2 Silent p.A159A 0.19 TCGA-69-7765-01 4 115544068 115544068 T C UGT8 Missense_Mutation p.L11P 0.11 deleterious(0) probably_damaging(0.997) TCGA-69-7765-01 4 122681519 122681519 G A TMEM155 Missense_Mutation p.P108L 0.27 tolerated_low_confidence(0.13) benign(0.001) TCGA-69-7765-01 4 123226112 123226112 G A KIAA1109 Missense_Mutation p.A3216T 0.11 possibly_damaging(0.678) TCGA-69-7765-01 4 123814181 123814181 G A NUDT6 Silent p.L251L 0.06 TCGA-69-7765-01 4 134073227 134073227 C A PCDH10 Silent p.V644V 0.27 TCGA-69-7765-01 4 140299929 140299929 A G NAA15 Silent p.L692L 0.17 TCGA-69-7765-01 4 155490699 155490699 A T FGB Missense_Mutation p.Q331L 0.15 tolerated(0.34) benign(0.023) TCGA-69-7765-01 4 159091673 159091673 G T FAM198B Silent p.I285I 0.21 TCGA-69-7765-01 4 175896699 175896699 A T ADAM29 Missense_Mutation p.H8L 0.15 tolerated(0.7) benign(0.001) TCGA-69-7765-01 4 177608410 177608410 G T VEGFC Missense_Mutation p.A359D 0.20 deleterious(0.02) benign(0.377) TCGA-69-7765-01 4 30732382 30732382 T C PCDH7 Intron 0.11 TCGA-69-7765-01 4 4204256 4204256 C A OTOP1 Missense_Mutation p.G217C 0.17 deleterious(0) probably_damaging(0.981) TCGA-69-7765-01 4 42576725 42576725 C A ATP8A1 Splice_Site p.X403_splice 0.25 TCGA-69-7765-01 4 4418977 4418977 C A NSG1 Missense_Mutation p.P125T 0.15 deleterious(0) probably_damaging(0.999) TCGA-69-7765-01 4 46053597 46053597 A T GABRG1 Silent p.P325P 0.14 TCGA-69-7765-01 4 68995542 68995542 C A TMPRSS11F 5'UTR 0.07 TCGA-69-7765-01 4 71346837 71346837 C T MUC7 Missense_Mutation p.L126F 0.20 tolerated(0.47) possibly_damaging(0.791) TCGA-69-7765-01 4 72338512 72338512 G T SLC4A4 Missense_Mutation p.L576F 0.23 deleterious(0.03) probably_damaging(0.987) TCGA-69-7765-01 4 74853810 74853810 C A PPBP Missense_Mutation p.R4I 0.18 deleterious(0) possibly_damaging(0.769) TCGA-69-7765-01 4 8229062 8229062 G T SH3TC1 Silent p.R547R 0.27 TCGA-69-7765-01 4 86863276 86863276 G T ARHGAP24 Missense_Mutation p.R150L 0.19 deleterious(0) benign(0.021) TCGA-69-7765-01 4 94750174 94750174 C - ATOH1 Frame_Shift_Del p.P33Rfs*74 0.13 TCGA-69-7765-01 4 960278 960279 - A DGKQ Frame_Shift_Ins p.D469Gfs*53 0.11 TCGA-69-7765-01 5 10681215 10681215 T A DAP Nonsense_Mutation p.K88* 0.17 TCGA-69-7765-01 5 1216921 1216921 T A SLC6A19 Missense_Mutation p.I345N 0.11 deleterious(0.03) possibly_damaging(0.58) TCGA-69-7765-01 5 128324337 128324337 G T SLC27A6 Missense_Mutation p.G244C 0.35 tolerated(0.12) benign(0.098) TCGA-69-7765-01 5 134074471 134074471 G A CAMLG Missense_Mutation p.G54E 0.19 tolerated_low_confidence(0.19) possibly_damaging(0.84) TCGA-69-7765-01 5 140433173 140433173 C T PCDHB1 Silent p.V706V 0.07 TCGA-69-7765-01 5 140564276 140564276 C T PCDHB16 Silent p.C714C 0.26 TCGA-69-7765-01 5 140574319 140574319 G T PCDHB10 Missense_Mutation p.G732C 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.588) TCGA-69-7765-01 5 145643186 145643186 G C RBM27 Missense_Mutation p.D775H 0.07 tolerated(0.07) benign(0.126) TCGA-69-7765-01 5 153382473 153382473 C T FAM114A2 Silent p.E350E 0.07 TCGA-69-7765-01 5 168135054 168135054 G T SLIT3 Missense_Mutation p.P924Q 0.23 deleterious(0) probably_damaging(1) TCGA-69-7765-01 5 169230097 169230097 G T DOCK2 Nonsense_Mutation p.E864* 0.28 TCGA-69-7765-01 5 169507231 169507231 A T DOCK2 Missense_Mutation p.K1744M 0.30 tolerated_low_confidence(0.06) benign(0.169) TCGA-69-7765-01 5 175530281 175530281 A T FAM153B Missense_Mutation p.E162V 0.08 deleterious_low_confidence(0) possibly_damaging(0.643) TCGA-69-7765-01 5 175530283 175530283 G T FAM153B Missense_Mutation p.D163Y 0.08 tolerated_low_confidence(0.23) benign(0.041) TCGA-69-7765-01 5 176520169 176520169 C A FGFR4 Missense_Mutation p.P363H 0.25 deleterious(0.01) possibly_damaging(0.687) TCGA-69-7765-01 5 178154111 178154111 C G ZNF354A Missense_Mutation p.E17Q 0.15 deleterious(0.04) benign(0.032) TCGA-69-7765-01 5 19747127 19747127 C - CDH18 Frame_Shift_Del p.Q150Kfs*32 0.25 TCGA-69-7765-01 5 24509859 24509859 G T CDH10 Missense_Mutation p.R358S 0.44 deleterious(0.01) possibly_damaging(0.632) TCGA-69-7765-01 5 26886125 26886125 G T CDH9 Missense_Mutation p.P527Q 0.08 deleterious(0.01) benign(0.002) TCGA-69-7765-01 5 33549360 33549360 G T ADAMTS12 Missense_Mutation p.S1418R 0.10 tolerated(0.39) possibly_damaging(0.58) TCGA-69-7765-01 5 39003687 39003687 C G RICTOR Missense_Mutation p.G78A 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-69-7765-01 5 39394384 39394384 C G DAB2 Missense_Mutation p.Q13H 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-69-7765-01 5 43297103 43297103 C - HMGCS1 Splice_Site p.X247_splice 0.09 TCGA-69-7765-01 5 43656846 43656846 C T NNT Silent p.F795F 0.06 TCGA-69-7765-01 5 45262383 45262383 C G HCN1 Silent p.T771T 0.48 TCGA-69-7765-01 5 640713 640713 G T CEP72 Missense_Mutation p.K511N 0.17 tolerated(0.13) benign(0.093) TCGA-69-7765-01 5 6751171 6751171 G T PAPD7 Missense_Mutation p.C377F 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.512) TCGA-69-7765-01 5 68505620 68505620 G T CENPH Missense_Mutation p.M246I 0.26 tolerated(0.17) benign(0.184) TCGA-69-7765-01 5 80631601 80631601 C T ACOT12 Nonsense_Mutation p.W416* 0.26 TCGA-69-7765-01 5 9630012 9630012 C A TAS2R1 Missense_Mutation p.D45Y 0.14 deleterious(0) probably_damaging(0.996) TCGA-69-7765-01 6 106555151 106555151 G A PRDM1 Silent p.E756E 0.26 TCGA-69-7765-01 6 107391278 107391278 C G BEND3 Missense_Mutation p.D373H 0.17 tolerated_low_confidence(0.06) possibly_damaging(0.479) TCGA-69-7765-01 6 11190713 11190713 G A NEDD9 Silent p.L463L 0.20 TCGA-69-7765-01 6 114379204 114379204 C A HS3ST5 Silent p.L86L 0.18 TCGA-69-7765-01 6 116542282 116542282 G T NT5DC1 Nonsense_Mutation p.E199* 0.12 TCGA-69-7765-01 6 117128171 117128171 C T GPRC6A Missense_Mutation p.E233K 0.10 tolerated(0.89) benign(0.016) TCGA-69-7765-01 6 117896503 117896503 C G GOPC Missense_Mutation p.E163Q 0.14 tolerated(0.15) benign(0.254) TCGA-69-7765-01 6 129785585 129785585 C A LAMA2 Silent p.A2381A 0.15 TCGA-69-7765-01 6 130465927 130465927 A G SAMD3 Missense_Mutation p.L434S 0.14 tolerated(0.07) probably_damaging(0.992) TCGA-69-7765-01 6 13364970 13364970 C G GFOD1 3'UTR 0.07 TCGA-69-7765-01 6 134349965 134349965 G A SLC2A12 Missense_Mutation p.P333L 0.21 tolerated(0.22) probably_damaging(1) TCGA-69-7765-01 6 136704871 136704871 T C MAP7 Missense_Mutation p.D214G 0.31 deleterious(0) probably_damaging(0.968) TCGA-69-7765-01 6 138576768 138576768 C G KIAA1244 Missense_Mutation p.I322M 0.10 deleterious(0) possibly_damaging(0.824) TCGA-69-7765-01 6 139222088 139222088 C G ECT2L Silent p.L806L 0.14 TCGA-69-7765-01 6 144812227 144812227 G C UTRN Missense_Mutation p.D1476H 0.15 deleterious(0.01) possibly_damaging(0.895) TCGA-69-7765-01 6 157528080 157528080 G T ARID1B Silent p.A1935A 0.14 TCGA-69-7765-01 6 26225393 26225393 C G HIST1H3E Missense_Mutation p.T4S 0.23 deleterious_low_confidence(0) benign(0) TCGA-69-7765-01 6 26509394 26509394 G C BTN1A1 Missense_Mutation p.A525P 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.83) TCGA-69-7765-01 6 28053504 28053504 C T ZNF165 Silent p.I82I 0.09 TCGA-69-7765-01 6 28478652 28478652 G T GPX6 Silent p.T39T 0.21 TCGA-69-7765-01 6 29394923 29394923 G - OR11A1 Frame_Shift_Del p.Q166Sfs*2 0.14 TCGA-69-7765-01 6 30571350 30571350 G A PPP1R10 Missense_Mutation p.P556S 0.04 deleterious(0.02) probably_damaging(0.994) TCGA-69-7765-01 6 348210 348210 G T DUSP22 Missense_Mutation p.C124F 0.11 tolerated(0.31) probably_damaging(1) TCGA-69-7765-01 6 35928847 35928847 T G SLC26A8 Silent p.S497S 0.20 TCGA-69-7765-01 6 401567 401567 G T IRF4 Missense_Mutation p.D297Y 0.08 deleterious(0.04) benign(0.292) TCGA-69-7765-01 6 41774562 41774562 C T USP49 Missense_Mutation p.A54T 0.07 deleterious(0) possibly_damaging(0.503) TCGA-69-7765-01 6 48036130 48036130 C A PTCHD4 Missense_Mutation p.A88S 0.16 deleterious(0.01) probably_damaging(0.97) TCGA-69-7765-01 6 49704215 49704215 G T CRISP3 Silent p.P49P 0.24 TCGA-69-7765-01 6 50810857 50810857 G A TFAP2B Missense_Mutation p.G379R 0.20 deleterious(0.01) probably_damaging(0.954) TCGA-69-7765-01 6 70423557 70423557 C A LMBRD1 Missense_Mutation p.G299C 0.16 tolerated(0.07) benign(0.002) TCGA-69-7765-01 6 76660317 76660317 G C IMPG1 Missense_Mutation p.L596V 0.09 tolerated(1) benign(0.376) TCGA-69-7765-01 6 80634702 80634702 A C ELOVL4 Missense_Mutation p.S112R 0.13 tolerated(0.08) benign(0.009) TCGA-69-7765-01 6 84772665 84772665 T - MRAP2 Frame_Shift_Del p.F62Lfs*3 0.20 TCGA-69-7765-01 6 85446962 85446962 C A TBX18 Missense_Mutation p.R422L 0.18 deleterious(0.01) probably_damaging(0.931) TCGA-69-7765-01 6 90388457 90388457 C G MDN1 Silent p.V4091V 0.05 TCGA-69-7765-01 6 90577735 90577735 G T CASP8AP2 RNA 0.13 TCGA-69-7765-01 6 96651491 96651491 C A FUT9 Missense_Mutation p.L154M 0.19 deleterious(0.01) probably_damaging(0.976) TCGA-69-7765-01 6 99322155 99322155 C A FBXL4 Nonstop_Mutation p.*622Lext*16 0.15 TCGA-69-7765-01 7 100682521 100682521 T A MUC17 Silent p.S2608S 0.13 TCGA-69-7765-01 7 101952100 101952100 G C SH2B2 Missense_Mutation p.E322Q 0.05 deleterious(0.01) possibly_damaging(0.837) TCGA-69-7765-01 7 105148818 105148818 G A PUS7 Nonsense_Mutation p.Q48* 0.14 TCGA-69-7765-01 7 107115750 107115750 C G GPR22 Silent p.T415T 0.23 TCGA-69-7765-01 7 107756451 107756451 C A LAMB4 Nonsense_Mutation p.E64* 0.17 TCGA-69-7765-01 7 11521485 11521485 G T THSD7A Silent p.T649T 0.27 TCGA-69-7765-01 7 117149133 117149133 T A CFTR Silent p.I70I 0.29 TCGA-69-7765-01 7 120606714 120606714 G T ING3 Silent p.V133V 0.31 TCGA-69-7765-01 7 120971841 120971841 C A WNT16 Silent p.T152T 0.26 TCGA-69-7765-01 7 121766473 121766473 C A AASS Missense_Mutation p.R143I 0.14 deleterious(0.03) benign(0.188) TCGA-69-7765-01 7 122221323 122221323 G A CADPS2 Silent p.F415F 0.12 TCGA-69-7765-01 7 127014540 127014540 G C ZNF800 Missense_Mutation p.P284A 0.05 tolerated(0.1) benign(0) TCGA-69-7765-01 7 127235648 127235648 C A FSCN3 Silent p.V144V 0.12 TCGA-69-7765-01 7 136700977 136700977 C T CHRM2 Silent p.L455L 0.08 TCGA-69-7765-01 7 140255507 140255507 C T DENND2A Missense_Mutation p.G656S 0.19 deleterious(0) probably_damaging(1) TCGA-69-7765-01 7 140481402 140481402 C A BRAF Missense_Mutation p.G469V 0.17 deleterious(0) probably_damaging(0.998) TCGA-69-7765-01 7 142639549 142639549 T G KEL Missense_Mutation p.Q670P 0.13 deleterious(0.04) benign(0.433) TCGA-69-7765-01 7 150732998 150732998 G T ABCB8 Missense_Mutation p.E319D 0.09 deleterious(0) probably_damaging(1) TCGA-69-7765-01 7 154598741 154598741 T C DPP6 Missense_Mutation p.S529P 0.12 deleterious(0) probably_damaging(0.995) TCGA-69-7765-01 7 154679441 154679441 C A DPP6 Nonsense_Mutation p.Y767* 0.13 TCGA-69-7765-01 7 154875864 154875864 G T HTR5A Splice_Site p.X248_splice 0.30 TCGA-69-7765-01 7 156752856 156752856 G T NOM1 Missense_Mutation p.Q540H 0.23 deleterious(0.02) benign(0.135) TCGA-69-7765-01 7 156752857 156752857 G T NOM1 Missense_Mutation p.D541Y 0.22 deleterious(0) probably_damaging(0.996) TCGA-69-7765-01 7 18705890 18705890 G T HDAC9 Missense_Mutation p.A508S 0.33 tolerated(0.64) benign(0.042) TCGA-69-7765-01 7 2802288 2802288 C T GNA12 Intron 0.09 TCGA-69-7765-01 7 38389037 38389037 G C TRGV5 Silent p.P91P 0.16 TCGA-69-7765-01 7 42004379 42004379 G T GLI3 Missense_Mutation p.P1431Q 0.11 tolerated_low_confidence(1) benign(0.003) TCGA-69-7765-01 7 42972003 42972003 G T MRPL32 Silent p.L6L 0.22 TCGA-69-7765-01 7 5266859 5266859 C T WIPI2 Silent p.L299L 0.08 TCGA-69-7765-01 7 5355642 5355642 C A TNRC18 Silent p.T2269T 0.17 TCGA-69-7765-01 7 55227989 55227989 C T EGFR Nonsense_Mutation p.Q486* 0.11 TCGA-69-7765-01 7 5541559 5541559 T G FBXL18 Missense_Mutation p.H114P 0.42 tolerated(0.2) possibly_damaging(0.533) TCGA-69-7765-01 7 72662628 72662628 C A GTF2IRD2P1 RNA 0.10 TCGA-69-7765-01 7 82474737 82474737 T A PCLO Silent p.S4632S 0.21 TCGA-69-7765-01 7 84651838 84651838 T G SEMA3D Missense_Mutation p.Y428S 0.11 deleterious(0.02) possibly_damaging(0.521) TCGA-69-7765-01 7 92244469 92244469 C A CDK6 Missense_Mutation p.E322D 0.31 tolerated_low_confidence(0.13) benign(0.003) TCGA-69-7765-01 7 98249103 98249103 C T NPTX2 Missense_Mutation p.S192L 0.06 tolerated(0.12) benign(0.075) TCGA-69-7765-01 8 10466309 10466309 C A RP1L1 Missense_Mutation p.A1767S 0.14 unknown(0) TCGA-69-7765-01 8 10466530 10466530 A G RP1L1 Missense_Mutation p.L1693P 0.21 unknown(0) TCGA-69-7765-01 8 110631080 110631080 C A SYBU Missense_Mutation p.V140L 0.19 tolerated(0.42) benign(0.009) TCGA-69-7765-01 8 113358410 113358410 C G CSMD3 Missense_Mutation p.G2120R 0.12 deleterious(0) probably_damaging(0.999) TCGA-69-7765-01 8 113585852 113585852 A G CSMD3 Missense_Mutation p.L1307P 0.17 deleterious(0) probably_damaging(0.997) TCGA-69-7765-01 8 114186078 114186078 G A CSMD3 Silent p.F194F 0.06 TCGA-69-7765-01 8 124448714 124448714 C T WDYHV1 Missense_Mutation p.H86Y 0.12 tolerated(0.52) probably_damaging(0.982) TCGA-69-7765-01 8 131916178 131916178 G C ADCY8 Missense_Mutation p.T584S 0.10 tolerated(0.09) benign(0.213) TCGA-69-7765-01 8 132002707 132002707 G T ADCY8 Missense_Mutation p.Q348K 0.17 tolerated(0.17) benign(0.011) TCGA-69-7765-01 8 145512941 145512941 G T BOP1 Missense_Mutation p.S48R 0.27 tolerated_low_confidence(0.16) possibly_damaging(0.451) TCGA-69-7765-01 8 146157370 146157370 C A ZNF16 Missense_Mutation p.S268I 0.19 deleterious(0.02) benign(0.063) TCGA-69-7765-01 8 16850547 16850547 T C FGF20 3'UTR 0.14 TCGA-69-7765-01 8 2000343 2000343 A T MYOM2 Missense_Mutation p.S59C 0.25 deleterious(0.01) benign(0.401) TCGA-69-7765-01 8 22874895 22874895 G T RHOBTB2 Silent p.R721R 0.16 TCGA-69-7765-01 8 30703740 30703740 G A TEX15 Missense_Mutation p.H932Y 0.19 tolerated(0.08) possibly_damaging(0.801) TCGA-69-7765-01 8 35542097 35542097 C G UNC5D Intron 0.21 TCGA-69-7765-01 8 42873711 42873711 A T HOOK3 3'UTR 0.23 TCGA-69-7765-01 8 48889369 48889369 G C MCM4 3'UTR 0.23 TCGA-69-7765-01 8 52387622 52387622 C A PXDNL Missense_Mutation p.G202C 0.26 deleterious(0) probably_damaging(0.997) TCGA-69-7765-01 8 57025614 57025614 C A MOS Missense_Mutation p.G310W 0.12 deleterious(0) probably_damaging(1) TCGA-69-7765-01 8 67986491 67986491 G C CSPP1 Missense_Mutation p.A38P 0.08 tolerated(0.07) possibly_damaging(0.697) TCGA-69-7765-01 8 70674028 70674028 G T SLCO5A1 Silent p.P330P 0.26 TCGA-69-7765-01 8 70674029 70674029 G T SLCO5A1 Missense_Mutation p.P330H 0.25 deleterious(0.02) possibly_damaging(0.886) TCGA-69-7765-01 8 70970913 70970913 G T PRDM14 Missense_Mutation p.H450N 0.16 deleterious(0.02) benign(0.346) TCGA-69-7765-01 8 70978595 70978595 C A PRDM14 Missense_Mutation p.C353F 0.24 tolerated(0.19) probably_damaging(0.958) TCGA-69-7765-01 8 77767937 77767937 C A ZFHX4 Missense_Mutation p.P2927Q 0.20 probably_damaging(0.974) TCGA-69-7765-01 8 90958458 90958458 T C NBN Silent p.R660R 0.20 TCGA-69-7765-01 8 91094947 91094947 G T CALB1 5'UTR 0.18 TCGA-69-7765-01 9 104125069 104125069 C T BAAT Missense_Mutation p.E300K 0.12 tolerated(0.51) benign(0.022) TCGA-69-7765-01 9 110074006 110074006 A G RAD23B Missense_Mutation p.T181A 0.16 tolerated(1) benign(0.014) TCGA-69-7765-01 9 115095769 115095769 A T PTBP3 5'Flank 0.12 TCGA-69-7765-01 9 119770372 119770372 G T ASTN2 Silent p.T479T 0.23 TCGA-69-7765-01 9 120476891 120476891 A C TLR4 Missense_Mutation p.T829P 0.11 deleterious_low_confidence(0.04) benign(0.078) TCGA-69-7765-01 9 125154703 125154703 G T PTGS1 Silent p.T560T 0.22 TCGA-69-7765-01 9 129975264 129975264 G T RALGPS1 Missense_Mutation p.W496C 0.20 tolerated(0.08) probably_damaging(0.999) TCGA-69-7765-01 9 134360124 134360124 A T PRRC2B Missense_Mutation p.R1838W 0.17 deleterious(0.01) probably_damaging(0.966) TCGA-69-7765-01 9 139700951 139700951 T C CCDC183 Intron 0.18 TCGA-69-7765-01 9 19573416 19573416 G T SLC24A2 Missense_Mutation p.S427Y 0.19 deleterious(0.03) benign(0.089) TCGA-69-7765-01 9 28863686 28863686 A G MIR876 RNA 0.09 TCGA-69-7765-01 9 35751401 35751401 G T RGP1 Missense_Mutation p.R209L 0.16 deleterious(0) possibly_damaging(0.86) TCGA-69-7765-01 9 37746729 37746729 G C FRMPD1 Missense_Mutation p.C1567S 0.19 deleterious(0.01) benign(0.099) TCGA-69-7765-01 9 40715901 40715901 G T FAM74A3 RNA 0.12 TCGA-69-7765-01 9 43816690 43816690 C A CNTNAP3B Missense_Mutation p.L266M 0.23 deleterious(0) probably_damaging(0.951) TCGA-69-7765-01 9 6540061 6540061 G T GLDC Silent p.L885L 0.15 TCGA-69-7765-01 9 79469073 79469073 A T PRUNE2 Missense_Mutation p.C30S 0.07 deleterious(0) probably_damaging(0.999) TCGA-69-7765-01 9 84609203 84609203 G T SPATA31D1 Missense_Mutation p.R1273M 0.13 tolerated(0.11) benign(0.007) TCGA-69-7765-01 9 8465638 8465638 C G PTPRD Missense_Mutation p.R1181P 0.19 deleterious(0.01) probably_damaging(0.956) TCGA-69-7765-01 9 93979560 93979560 T C AUH Missense_Mutation p.E298G 0.30 deleterious(0.03) possibly_damaging(0.804) TCGA-69-7765-01 X 110390965 110390965 G T PAK3 Nonsense_Mutation p.G129* 0.56 TCGA-69-7765-01 X 111698592 111698592 C T ZCCHC16 Silent p.C212C 0.42 TCGA-69-7765-01 X 118763248 118763248 G A SEPT6 Intron 0.43 TCGA-69-7765-01 X 122387356 122387356 G T GRIA3 Missense_Mutation p.K157N 0.40 tolerated(0.36) benign(0.003) TCGA-69-7765-01 X 134992256 134992256 C A SAGE1 Silent p.V597V 0.47 TCGA-69-7765-01 X 135469964 135469964 G A GPR112 Silent p.T2614T 0.34 TCGA-69-7765-01 X 135482015 135482015 G T GPR112 Missense_Mutation p.R2772L 0.35 deleterious(0.04) probably_damaging(0.936) TCGA-69-7765-01 X 146295053 146295053 T C MIR513A1 RNA 0.29 TCGA-69-7765-01 X 150348612 150348612 C A GPR50 Missense_Mutation p.P186H 0.40 deleterious(0.01) benign(0.184) TCGA-69-7765-01 X 1505553 1505553 C A SLC25A6 Missense_Mutation p.R280L 0.15 deleterious(0) probably_damaging(1) TCGA-69-7765-01 X 151815612 151815612 G C GABRQ Silent p.T170T 0.41 TCGA-69-7765-01 X 32867934 32867934 C A DMD Missense_Mutation p.G33W 0.25 probably_damaging(0.995) TCGA-69-7765-01 X 47774711 47774711 G T ZNF81 Silent p.G222G 0.38 TCGA-69-7765-01 X 54492140 54492140 G C FGD1 Missense_Mutation p.H496D 0.31 tolerated(0.14) possibly_damaging(0.607) TCGA-69-7765-01 X 57934461 57934461 C A ZXDA Missense_Mutation p.L798F 0.36 deleterious(0) probably_damaging(0.997) TCGA-69-7765-01 X 5810940 5810940 T A NLGN4X Missense_Mutation p.Q790L 0.28 deleterious_low_confidence(0.04) possibly_damaging(0.885) TCGA-69-7765-01 X 601756 601756 C A SHOX Missense_Mutation p.N189K 0.14 deleterious(0.01) benign(0.021) TCGA-69-7765-01 X 64958875 64958875 T A MSN Missense_Mutation p.L463Q 0.12 deleterious(0.01) probably_damaging(0.988) TCGA-69-7765-01 X 77912661 77912661 G T ZCCHC5 Missense_Mutation p.N419K 0.37 tolerated(0.13) benign(0.133) TCGA-69-7765-01 X 91090999 91090999 C A PCDH11X Missense_Mutation p.P166T 0.42 deleterious(0.04) probably_damaging(0.998) TCGA-69-7765-01 X 96369870 96369870 G A DIAPH2 Missense_Mutation p.R832K 0.52 tolerated(1) benign(0.124) TCGA-69-7973-01 10 101163362 101163362 C A GOT1 Nonsense_Mutation p.G275* 0.35 TCGA-69-7973-01 10 105006146 105006146 G A RPEL1 Nonsense_Mutation p.W131* 0.41 TCGA-69-7973-01 10 106074291 106074291 C T ITPRIP Missense_Mutation p.V507I 0.06 deleterious(0.03) probably_damaging(0.943) TCGA-69-7973-01 10 108437095 108437095 G T SORCS1 Missense_Mutation p.T603K 0.14 deleterious(0) benign(0.118) TCGA-69-7973-01 10 15559194 15559194 C G ITGA8 Missense_Mutation p.R1052T 0.30 deleterious(0.05) benign(0.224) TCGA-69-7973-01 10 16962128 16962128 C A CUBN Missense_Mutation p.G2219C 0.15 deleterious(0) probably_damaging(1) TCGA-69-7973-01 10 21461395 21461395 T A NEBL-AS1 5'Flank 0.24 TCGA-69-7973-01 10 31799619 31799619 C G ZEB1 Nonsense_Mutation p.S168* 0.49 TCGA-69-7973-01 10 48416617 48416617 T A GDF2 Missense_Mutation p.Q26L 0.38 tolerated(0.14) benign(0.111) TCGA-69-7973-01 10 73567647 73567647 C T CDH23 Silent p.L629L 0.27 TCGA-69-7973-01 11 1011355 1011355 A T AP2A2 3'UTR 0.70 TCGA-69-7973-01 11 108200963 108200963 G A ATM Missense_Mutation p.E2444K 0.35 deleterious(0.01) probably_damaging(0.936) TCGA-69-7973-01 11 113075033 113075033 C A NCAM1 Missense_Mutation p.D110E 0.28 tolerated_low_confidence(0.2) benign(0.007) TCGA-69-7973-01 11 113935185 113935186 - G ZBTB16 Frame_Shift_Ins p.E390Gfs*26 0.24 TCGA-69-7973-01 11 1213486 1213486 C A MUC5AC RNA 0.06 TCGA-69-7973-01 11 12183740 12183740 G A MICAL2 Missense_Mutation p.G13E 0.19 deleterious(0.02) possibly_damaging(0.611) TCGA-69-7973-01 11 123847682 123847682 C T OR10S1 Silent p.V239V 0.29 TCGA-69-7973-01 11 15199873 15199873 C A INSC Nonsense_Mutation p.C200* 0.28 TCGA-69-7973-01 11 17531110 17531110 G T USH1C Silent p.P602P 0.25 TCGA-69-7973-01 11 18754225 18754225 C T PTPN5 Missense_Mutation p.E415K 0.35 tolerated(0.72) benign(0.01) TCGA-69-7973-01 11 20622867 20622867 G T SLC6A5 Missense_Mutation p.D66Y 0.40 deleterious_low_confidence(0) benign(0.235) TCGA-69-7973-01 11 30938525 30938525 G T DCDC1 Missense_Mutation p.P1115H 0.29 tolerated(0.18) benign(0.001) TCGA-69-7973-01 11 32413520 32413520 G T WT1 Missense_Mutation p.T477K 0.27 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-69-7973-01 11 3716680 3716680 G A NUP98 Missense_Mutation p.P1389L 0.13 tolerated(0.14) probably_damaging(1) TCGA-69-7973-01 11 5529501 5529501 C A UBQLN3 Missense_Mutation p.A430S 0.29 tolerated_low_confidence(0.29) benign(0.007) TCGA-69-7973-01 11 55655703 55655703 C A TRIM51 Missense_Mutation p.Q235K 0.07 tolerated(0.51) benign(0) TCGA-69-7973-01 11 56237922 56237922 G A OR5M3 Missense_Mutation p.R18C 0.06 tolerated(0.09) benign(0) TCGA-69-7973-01 11 58189955 58189955 G T OR5B2 Silent p.P260P 0.27 TCGA-69-7973-01 11 62189816 62189816 C A SCGB1A1 Missense_Mutation p.A60D 0.36 tolerated(0.14) probably_damaging(0.975) TCGA-69-7973-01 11 66191384 66191384 C A NPAS4 Silent p.T341T 0.31 TCGA-69-7973-01 11 66191385 66191385 A T NPAS4 Missense_Mutation p.M342L 0.31 tolerated_low_confidence(0.41) benign(0) TCGA-69-7973-01 11 72295353 72295353 G A PDE2A Silent p.V514V 0.34 TCGA-69-7973-01 11 78380773 78380773 G T TENM4 Missense_Mutation p.S2206Y 0.40 tolerated(0.96) benign(0.008) TCGA-69-7973-01 11 85396673 85396673 C A CCDC89 Missense_Mutation p.Q167H 0.47 deleterious(0.01) possibly_damaging(0.877) TCGA-69-7973-01 12 10217401 10217401 G C CLEC9A Missense_Mutation p.G181A 0.26 tolerated(0.26) benign(0.109) TCGA-69-7973-01 12 114380154 114380154 C A RBM19 Missense_Mutation p.G571V 0.22 deleterious(0) probably_damaging(0.993) TCGA-69-7973-01 12 114793838 114793838 G T TBX5 Silent p.S352S 0.30 TCGA-69-7973-01 12 117660627 117660627 G T NOS1 Missense_Mutation p.Q1324K 0.34 tolerated(0.17) possibly_damaging(0.543) TCGA-69-7973-01 12 125449541 125449541 C T DHX37 Missense_Mutation p.D583N 0.47 tolerated(0.14) benign(0.019) TCGA-69-7973-01 12 133502051 133502051 T C ZNF605 Missense_Mutation p.T643A 0.29 tolerated(0.05) possibly_damaging(0.572) TCGA-69-7973-01 12 21602606 21602606 G A PYROXD1 Missense_Mutation p.R132H 0.37 deleterious(0) probably_damaging(1) TCGA-69-7973-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.28 deleterious(0.04) probably_damaging(0.993) TCGA-69-7973-01 12 26750046 26750046 C A ITPR2 Missense_Mutation p.V1342L 0.28 deleterious(0) possibly_damaging(0.866) TCGA-69-7973-01 12 29608325 29608325 C A OVCH1 Missense_Mutation p.G765V 0.28 tolerated(0.07) probably_damaging(0.972) TCGA-69-7973-01 12 51488893 51488893 G A TFCP2 3'UTR 0.39 TCGA-69-7973-01 12 62931032 62931032 G - MON2 Frame_Shift_Del p.T669Qfs*2 0.27 TCGA-69-7973-01 12 75444384 75444384 C T KCNC2 Missense_Mutation p.M467I 0.29 deleterious(0) probably_damaging(0.997) TCGA-69-7973-01 13 101278089 101278089 C T TMTC4 Silent p.R548R 0.27 TCGA-69-7973-01 13 101944371 101944371 T A NALCN Missense_Mutation p.R339S 0.20 tolerated(0.16) benign(0.222) TCGA-69-7973-01 13 23909311 23909311 C A SACS Nonsense_Mutation p.G2902* 0.21 TCGA-69-7973-01 13 25284950 25284950 G T ATP12A Missense_Mutation p.G979V 0.49 deleterious(0) probably_damaging(0.995) TCGA-69-7973-01 13 25744312 25744312 G T AMER2 Silent p.A482A 0.31 TCGA-69-7973-01 13 25895081 25895081 A T NUPL1 Missense_Mutation p.Q267H 0.55 tolerated(0.09) possibly_damaging(0.694) TCGA-69-7973-01 13 26975642 26975642 G T CDK8 Nonsense_Mutation p.G384* 0.43 TCGA-69-7973-01 13 28893609 28893609 C A FLT1 Missense_Mutation p.K1079N 0.22 deleterious(0) possibly_damaging(0.857) TCGA-69-7973-01 13 53217012 53217012 G T HNRNPA1L2 Nonsense_Mutation p.G129* 0.43 TCGA-69-7973-01 13 58208547 58208547 C T PCDH17 Missense_Mutation p.L623F 0.04 deleterious(0) probably_damaging(0.992) TCGA-69-7973-01 13 67205545 67205545 T A PCDH9 Splice_Site p.X1047_splice 0.28 TCGA-69-7973-01 13 72440289 72440289 C A DACH1 Missense_Mutation p.G207C 0.20 possibly_damaging(0.702) TCGA-69-7973-01 13 79176020 79176020 C A POU4F1 Missense_Mutation p.D264Y 0.57 deleterious(0) unknown(0) TCGA-69-7973-01 13 96242177 96242177 C A DZIP1 Missense_Mutation p.S618I 0.17 tolerated(0.11) benign(0.001) TCGA-69-7973-01 13 99356551 99356551 A G SLC15A1 Missense_Mutation p.Y470H 0.16 tolerated(0.44) benign(0.033) TCGA-69-7973-01 14 104641579 104641579 C T KIF26A Silent p.I818I 0.42 TCGA-69-7973-01 14 20404272 20404272 G T OR4K1 Missense_Mutation p.W149C 0.34 deleterious(0) probably_damaging(1) TCGA-69-7973-01 14 52520643 52520643 C T NID2 Silent p.L361L 0.24 TCGA-69-7973-01 14 70634699 70634699 C T SLC8A3 Silent p.E147E 0.17 TCGA-69-7973-01 14 75230646 75230646 G T YLPM1 Missense_Mutation p.V152L 0.30 unknown(0) TCGA-69-7973-01 14 77767441 77767441 G T POMT2 Missense_Mutation p.L270I 0.08 tolerated(0.27) benign(0.019) TCGA-69-7973-01 14 81743579 81743579 C T STON2 Silent p.T692T 0.38 TCGA-69-7973-01 14 89337895 89337895 G T TTC8 Missense_Mutation p.R351L 0.15 deleterious(0) probably_damaging(0.986) TCGA-69-7973-01 14 95058637 95058637 G T SERPINA5 3'UTR 0.32 TCGA-69-7973-01 14 95570155 95570155 T C DICER1 Missense_Mutation p.N1193S 0.46 tolerated_low_confidence(0.28) benign(0.001) TCGA-69-7973-01 15 35045156 35045156 C A GJD2 Missense_Mutation p.E163D 0.23 tolerated(0.15) benign(0.155) TCGA-69-7973-01 15 35274007 35274007 G A ZNF770 Silent p.N543N 0.23 TCGA-69-7973-01 15 77325276 77325276 C A PSTPIP1 Silent p.S304S 0.50 TCGA-69-7973-01 15 81627114 81627114 A T TMC3 Silent p.P802P 0.23 TCGA-69-7973-01 16 20566619 20566619 C A ACSM2B Missense_Mutation p.G190W 0.26 deleterious(0) probably_damaging(1) TCGA-69-7973-01 16 20648082 20648082 C T ACSM1 Silent p.V426V 0.21 TCGA-69-7973-01 16 25228604 25228604 G T AQP8 Missense_Mutation p.R33L 0.32 tolerated(0.15) benign(0.025) TCGA-69-7973-01 16 27840252 27840252 A G GSG1L Missense_Mutation p.C230R 0.32 deleterious(0) probably_damaging(0.998) TCGA-69-7973-01 16 30005266 30005266 A T HIRIP3 Silent p.S400S 0.39 TCGA-69-7973-01 16 30017977 30017977 G T DOC2A Missense_Mutation p.D300E 0.36 tolerated(0.1) benign(0.008) TCGA-69-7973-01 16 31383063 31383063 C T ITGAX Silent p.L706L 0.26 TCGA-69-7973-01 16 31383064 31383064 G C ITGAX Missense_Mutation p.G707R 0.27 tolerated(0.06) benign(0.442) TCGA-69-7973-01 16 32264933 32264933 C A TP53TG3D Missense_Mutation p.P87T 0.25 tolerated_low_confidence(0.38) possibly_damaging(0.803) TCGA-69-7973-01 16 55905674 55905674 A T CES5A Missense_Mutation p.C123S 0.29 deleterious(0) probably_damaging(0.999) TCGA-69-7973-01 16 81253874 81253874 G T PKD1L2 Silent p.A34A 0.22 TCGA-69-7973-01 16 88872177 88872177 G T CDT1 Silent p.P244P 0.12 TCGA-69-7973-01 17 11651071 11651071 G T DNAH9 Nonsense_Mutation p.E2200* 0.28 TCGA-69-7973-01 17 1684657 1684657 C G SMYD4 Missense_Mutation p.D780H 0.20 deleterious(0.04) benign(0.158) TCGA-69-7973-01 17 18565820 18565820 C A ZNF286B Silent p.G333G 0.21 TCGA-69-7973-01 17 18565821 18565821 C A ZNF286B Missense_Mutation p.G333V 0.21 deleterious(0.01) probably_damaging(1) TCGA-69-7973-01 17 54431215 54431215 G T ANKFN1 Missense_Mutation p.A140S 0.35 tolerated(0.07) probably_damaging(0.98) TCGA-69-7973-01 17 78445555 78445555 C T NPTX1 Missense_Mutation p.V352M 0.19 deleterious(0) probably_damaging(0.966) TCGA-69-7973-01 17 79872391 79872391 C A SIRT7 Missense_Mutation p.V199F 0.30 deleterious(0.03) benign(0.01) TCGA-69-7973-01 17 8790490 8790490 A T PIK3R5 Missense_Mutation p.Y610N 0.16 deleterious(0) probably_damaging(0.995) TCGA-69-7973-01 18 14105256 14105256 C A ZNF519 Missense_Mutation p.G428V 0.39 deleterious(0.01) probably_damaging(0.971) TCGA-69-7973-01 18 14105257 14105257 C A ZNF519 Nonsense_Mutation p.G428* 0.39 TCGA-69-7973-01 18 21294017 21294019 TCA CC LAMA3 Frame_Shift_Del p.L143Pfs*15 0.23 TCGA-69-7973-01 18 31432876 31432876 T A NOL4 Missense_Mutation p.Y616F 0.35 deleterious(0) probably_damaging(0.995) TCGA-69-7973-01 18 44036624 44036624 C G RNF165 3'UTR 0.17 TCGA-69-7973-01 18 61034241 61034241 C T KDSR Intron 0.28 TCGA-69-7973-01 18 61326666 61326666 C T SERPINB3 Silent p.K106K 0.42 TCGA-69-7973-01 19 15905792 15905792 C A OR10H5 Missense_Mutation p.P312T 0.26 tolerated(0.07) benign(0.013) TCGA-69-7973-01 19 15905793 15905793 C T OR10H5 Missense_Mutation p.P312L 0.26 tolerated(0.15) benign(0.005) TCGA-69-7973-01 19 16612157 16612157 C - C19orf44 Frame_Shift_Del p.P186Lfs*33 0.37 TCGA-69-7973-01 19 19645898 19645898 G T YJEFN3 Missense_Mutation p.G125V 0.36 deleterious(0) probably_damaging(1) TCGA-69-7973-01 19 22605031 22605031 G T ZNF98 5'UTR 0.34 TCGA-69-7973-01 19 22939928 22939928 G T ZNF99 3'Flank 0.31 TCGA-69-7973-01 19 32902151 32902151 C T DPY19L3 Missense_Mutation p.T37I 0.30 tolerated(0.3) benign(0.019) TCGA-69-7973-01 19 36029295 36029295 C A GAPDHS Missense_Mutation p.P111Q 0.23 deleterious_low_confidence(0.05) probably_damaging(0.924) TCGA-69-7973-01 19 36029297 36029297 G T GAPDHS Nonsense_Mutation p.E112* 0.23 TCGA-69-7973-01 19 40331126 40331126 C A FBL Missense_Mutation p.G71C 0.25 deleterious(0.01) unknown(0) TCGA-69-7973-01 19 45477801 45477801 G T CLPTM1 Missense_Mutation p.G139C 0.33 deleterious(0) probably_damaging(1) TCGA-69-7973-01 19 47725050 47725050 T C BBC3 Missense_Mutation p.T232A 0.45 tolerated_low_confidence(0.05) benign(0.124) TCGA-69-7973-01 19 47865873 47865873 G T DHX34 Nonsense_Mutation p.E506* 0.27 TCGA-69-7973-01 19 50040445 50040445 C T RCN3 Missense_Mutation p.R201W 0.34 deleterious(0) probably_damaging(0.993) TCGA-69-7973-01 19 50363317 50363323 GAAAATC - PTOV1 Frame_Shift_Del p.K372Nfs*57 0.17 TCGA-69-7973-01 19 51330362 51330362 G T KLK15 Missense_Mutation p.Q85K 0.14 deleterious(0.02) possibly_damaging(0.543) TCGA-69-7973-01 19 53050786 53050786 G T ZNF808 Missense_Mutation p.V29L 0.35 deleterious(0.02) probably_damaging(0.935) TCGA-69-7973-01 19 53770432 53770432 C A VN1R4 Missense_Mutation p.D163Y 0.10 tolerated(0.11) benign(0.251) TCGA-69-7973-01 19 56539106 56539106 G A NLRP5 Missense_Mutation p.A503T 0.38 tolerated(0.25) benign(0.232) TCGA-69-7973-01 19 56704176 56704176 C A ZSCAN5B Missense_Mutation p.Q82H 0.40 deleterious(0) probably_damaging(0.999) TCGA-69-7973-01 19 58290976 58290976 G T ZNF586 Nonsense_Mutation p.G341* 0.29 TCGA-69-7973-01 19 58563979 58563979 G A ZSCAN1 Missense_Mutation p.R196H 0.18 tolerated(0.19) benign(0) TCGA-69-7973-01 19 58596565 58596565 G A ZSCAN18 Silent p.D396D 0.16 TCGA-69-7973-01 19 726187 726187 G T PALM Missense_Mutation p.A19S 0.54 tolerated(0.13) benign(0.235) TCGA-69-7973-01 19 758716 758716 C A MISP Silent p.S590S 0.27 TCGA-69-7973-01 19 9067164 9067164 C A MUC16 Missense_Mutation p.R6761M 0.48 unknown(0) TCGA-69-7973-01 1 151502571 151502571 G T CGN Missense_Mutation p.D765Y 0.28 deleterious(0) probably_damaging(0.952) TCGA-69-7973-01 1 152595470 152595470 C A LCE3A Missense_Mutation p.G37V 0.47 deleterious_low_confidence(0.01) unknown(0) TCGA-69-7973-01 1 152659408 152659408 C A LCE2B Missense_Mutation p.P30H 0.25 deleterious_low_confidence(0.02) unknown(0) TCGA-69-7973-01 1 159921514 159921514 C T SLAMF9 Silent p.K269K 0.43 TCGA-69-7973-01 1 161600164 161600164 G A FCGR3B Missense_Mutation p.R55W 0.13 deleterious(0.01) benign(0.008) TCGA-69-7973-01 1 161681891 161681891 T A FCRLA Missense_Mutation p.S246T 0.29 tolerated(0.1) benign(0.256) TCGA-69-7973-01 1 16256929 16256929 A C SPEN Missense_Mutation p.L1398F 0.25 benign(0.025) TCGA-69-7973-01 1 167825589 167825589 C A ADCY10 Missense_Mutation p.R662L 0.38 tolerated(0.1) benign(0.406) TCGA-69-7973-01 1 168215939 168215939 A G SFT2D2 3'UTR 0.40 TCGA-69-7973-01 1 16902825 16902825 G A NBPF1 Missense_Mutation p.L686F 0.04 tolerated(0.39) probably_damaging(0.996) TCGA-69-7973-01 1 170695375 170695375 C A PRRX1 Missense_Mutation p.N144K 0.27 deleterious(0) probably_damaging(0.992) TCGA-69-7973-01 1 171759642 171759642 G T METTL13 Nonsense_Mutation p.E454* 0.25 TCGA-69-7973-01 1 186099673 186099673 C T HMCN1 Silent p.N4358N 0.42 TCGA-69-7973-01 1 19166718 19166718 C A TAS1R2 Missense_Mutation p.C632F 0.36 tolerated(0.47) benign(0.072) TCGA-69-7973-01 1 197298112 197298112 A G CRB1 Missense_Mutation p.I211V 0.04 tolerated(0.54) benign(0.02) TCGA-69-7973-01 1 200017678 200017678 C A NR5A2 Missense_Mutation p.P281H 0.43 tolerated(0.18) benign(0.013) TCGA-69-7973-01 1 204416610 204416610 C A PIK3C2B Missense_Mutation p.D815Y 0.24 deleterious(0.04) probably_damaging(0.982) TCGA-69-7973-01 1 205033506 205033507 GG - CNTN2 Frame_Shift_Del p.G434Rfs*49 0.21 TCGA-69-7973-01 1 208061141 208061141 G T CD34 Missense_Mutation p.A367D 0.22 deleterious(0) probably_damaging(0.998) TCGA-69-7973-01 1 228238375 228238375 T G WNT3A Missense_Mutation p.F111C 0.25 deleterious(0) probably_damaging(0.996) TCGA-69-7973-01 1 230371838 230371838 C G GALNT2 Silent p.A151A 0.23 TCGA-69-7973-01 1 237608793 237608793 C A RYR2 Missense_Mutation p.S421R 0.49 possibly_damaging(0.795) TCGA-69-7973-01 1 241799098 241799098 T A CHML 5'UTR 0.31 TCGA-69-7973-01 1 248512625 248512625 G A OR14C36 Silent p.L183L 0.44 TCGA-69-7973-01 1 36505477 36505477 G - AGO3 Frame_Shift_Del p.A644Pfs*43 0.20 TCGA-69-7973-01 1 39801556 39801556 G A MACF1 Intron 0.14 TCGA-69-7973-01 1 39853267 39853267 G C MACF1 Missense_Mutation p.W2856S 0.22 probably_damaging(0.99) TCGA-69-7973-01 1 40923036 40923036 G C ZFP69B Missense_Mutation p.G121R 0.35 tolerated(0.23) possibly_damaging(0.82) TCGA-69-7973-01 1 44010767 44010767 A T PTPRF Silent p.P7P 0.36 TCGA-69-7973-01 1 44079301 44079301 A T PTPRF Missense_Mutation p.H1329L 0.18 deleterious(0.02) benign(0.007) TCGA-69-7973-01 1 53513636 53513636 C T SCP2 Intron 0.26 TCGA-69-7973-01 1 6173025 6173025 T C CHD5 Missense_Mutation p.D1649G 0.32 tolerated_low_confidence(0.24) benign(0) TCGA-69-7973-01 1 62262980 62262980 G T INADL Missense_Mutation p.G428C 0.23 deleterious(0) probably_damaging(0.984) TCGA-69-7973-01 1 75078419 75078419 C T C1orf173 Missense_Mutation p.V359M 0.32 deleterious(0.02) possibly_damaging(0.862) TCGA-69-7973-01 1 7724662 7724662 G T CAMTA1 Silent p.T685T 0.11 TCGA-69-7973-01 1 78433325 78433325 C T FUBP1 Missense_Mutation p.M92I 0.30 tolerated(0.64) benign(0.014) TCGA-69-7973-01 1 89528730 89528730 T C GBP1 Missense_Mutation p.K63R 0.05 tolerated(0.26) benign(0.027) TCGA-69-7973-01 1 91784849 91784849 C A HFM1 Splice_Site p.X894_splice 0.22 TCGA-69-7973-01 1 91844039 91844039 T C HFM1 Splice_Site p.X387_splice 0.21 TCGA-69-7973-01 1 99771279 99771279 G C LPPR4 Missense_Mutation p.E335D 0.27 tolerated(0.46) benign(0.004) TCGA-69-7973-01 20 2397989 2397989 G C TGM6 Missense_Mutation p.R483P 0.27 tolerated(0.12) benign(0.356) TCGA-69-7973-01 20 25056959 25056959 G T VSX1 Missense_Mutation p.Q346K 0.30 tolerated(0.38) benign(0.023) TCGA-69-7973-01 20 2597952 2597952 G T TMC2 Silent p.P725P 0.28 TCGA-69-7973-01 20 30584749 30584749 C A XKR7 Missense_Mutation p.T410N 0.14 deleterious(0.01) benign(0.013) TCGA-69-7973-01 20 3208951 3208951 T C SLC4A11 Missense_Mutation p.M881V 0.22 tolerated(0.11) benign(0.16) TCGA-69-7973-01 20 39989942 39989942 A T EMILIN3 Missense_Mutation p.L756Q 0.20 deleterious(0.01) probably_damaging(0.969) TCGA-69-7973-01 20 44506050 44506050 G T ZSWIM3 Missense_Mutation p.D285Y 0.18 deleterious(0) probably_damaging(0.961) TCGA-69-7973-01 20 61959724 61959724 C A COL20A1 Missense_Mutation p.P1219T 0.33 deleterious(0.03) benign(0.362) TCGA-69-7973-01 21 39775583 39775583 G A ERG Missense_Mutation p.A153V 0.25 deleterious(0.03) possibly_damaging(0.871) TCGA-69-7973-01 21 47546150 47546150 G A COL6A2 Silent p.P807P 0.40 TCGA-69-7973-01 21 9907382 9907382 G T TEKT4P2 RNA 0.37 TCGA-69-7973-01 22 17450873 17450873 G A GAB4 Silent p.H299H 0.25 TCGA-69-7973-01 22 20780272 20780272 T A SCARF2 Missense_Mutation p.K669M 0.17 deleterious(0) probably_damaging(0.999) TCGA-69-7973-01 22 38824099 38824099 G T KCNJ4 Silent p.P13P 0.44 TCGA-69-7973-01 22 44161271 44161271 G T EFCAB6 Silent p.I118I 0.13 TCGA-69-7973-01 2 105885852 105885852 C A TGFBRAP1 Missense_Mutation p.W761C 0.25 deleterious(0) probably_damaging(1) TCGA-69-7973-01 2 105885853 105885853 C A TGFBRAP1 Missense_Mutation p.W761L 0.25 deleterious(0) probably_damaging(1) TCGA-69-7973-01 2 106497870 106497870 G A NCK2 Missense_Mutation p.G105S 0.34 tolerated(0.71) benign(0.002) TCGA-69-7973-01 2 130832897 130832897 C A POTEF Missense_Mutation p.M716I 0.17 deleterious_low_confidence(0.03) benign(0.172) TCGA-69-7973-01 2 131519752 131519752 C A AMER3 Missense_Mutation p.P36H 0.40 tolerated(0.2) possibly_damaging(0.72) TCGA-69-7973-01 2 141457845 141457845 C T LRP1B Nonsense_Mutation p.W2258* 0.30 TCGA-69-7973-01 2 153519186 153519186 T C PRPF40A Silent p.P751P 0.41 TCGA-69-7973-01 2 15378592 15378592 C G NBAS Missense_Mutation p.Q1981H 0.31 deleterious(0) probably_damaging(0.969) TCGA-69-7973-01 2 15427201 15427201 T A NBAS Missense_Mutation p.S1712C 0.32 tolerated(0.05) possibly_damaging(0.542) TCGA-69-7973-01 2 168104682 168104682 C A XIRP2 Silent p.S2260S 0.41 TCGA-69-7973-01 2 179320756 179320756 A T DFNB59 Missense_Mutation p.S143C 0.20 tolerated(0.24) benign(0.001) TCGA-69-7973-01 2 182344947 182344947 G T ITGA4 Missense_Mutation p.K236N 0.24 tolerated(0.3) benign(0.209) TCGA-69-7973-01 2 1906868 1906868 G T MYT1L Silent p.P670P 0.28 TCGA-69-7973-01 2 1921068 1921068 G T MYT1L Silent p.P507P 0.29 TCGA-69-7973-01 2 206166215 206166215 C G PARD3B Missense_Mutation p.S745C 0.28 deleterious(0.02) probably_damaging(0.997) TCGA-69-7973-01 2 207027009 207027009 G T EEF1B2 Intron 0.27 TCGA-69-7973-01 2 212589909 212589909 C T ERBB4 Silent p.T211T 0.22 TCGA-69-7973-01 2 216964791 216964791 G C TMEM169 Missense_Mutation p.R140S 0.31 tolerated(0.66) benign(0.075) TCGA-69-7973-01 2 219538381 219538381 C T STK36 Missense_Mutation p.R40C 0.23 deleterious(0) probably_damaging(0.99) TCGA-69-7973-01 2 219614034 219614034 C T TTLL4 Missense_Mutation p.H887Y 0.40 deleterious(0.04) benign(0.262) TCGA-69-7973-01 2 220156202 220156202 C A PTPRN Missense_Mutation p.V907L 0.27 deleterious(0) probably_damaging(0.965) TCGA-69-7973-01 2 220251451 220251451 C A DNPEP Missense_Mutation p.G90V 0.47 deleterious(0.03) probably_damaging(0.993) TCGA-69-7973-01 2 242741262 242741262 G T GAL3ST2 Silent p.T62T 0.32 TCGA-69-7973-01 2 3691323 3691323 C T COLEC11 Missense_Mutation p.A158V 0.32 tolerated(0.26) possibly_damaging(0.55) TCGA-69-7973-01 2 45171734 45171734 C T SIX3 Silent p.S278S 0.15 TCGA-69-7973-01 2 51255115 51255115 C A NRXN1 Missense_Mutation p.E99D 0.17 tolerated(0.08) possibly_damaging(0.753) TCGA-69-7973-01 2 63631450 63631450 C A WDPCP Missense_Mutation p.A390S 0.27 tolerated(0.08) benign(0.277) TCGA-69-7973-01 2 74040677 74040677 A T C2orf78 Silent p.A57A 0.34 TCGA-69-7973-01 2 89399500 89399500 G C IGKV1-16 Missense_Mutation p.S68C 0.16 deleterious(0.01) benign(0.003) TCGA-69-7973-01 2 89399501 89399501 A G IGKV1-16 Missense_Mutation p.S68P 0.17 tolerated(0.06) benign(0.001) TCGA-69-7973-01 2 89976296 89976296 C A IGKV2D-30 Missense_Mutation p.T56N 0.42 tolerated(0.32) benign(0.086) TCGA-69-7973-01 2 98354034 98354034 C T ZAP70 Missense_Mutation p.A463V 0.39 deleterious(0.01) probably_damaging(1) TCGA-69-7973-01 3 109023336 109023336 G T DPPA2 Silent p.P280P 0.40 TCGA-69-7973-01 3 116163940 116163940 G A LSAMP 5'UTR 0.73 TCGA-69-7973-01 3 167023682 167023682 C T ZBBX Missense_Mutation p.D492N 0.52 tolerated(0.52) benign(0.005) TCGA-69-7973-01 3 170198557 170198557 T A SLC7A14 Missense_Mutation p.N505I 0.57 tolerated(0.16) benign(0.028) TCGA-69-7973-01 3 179537734 179537734 C T PEX5L Missense_Mutation p.A285T 0.61 tolerated(0.07) probably_damaging(0.999) TCGA-69-7973-01 3 391201 391201 T G CHL1 Silent p.T336T 0.23 TCGA-69-7973-01 3 41949337 41949337 C A ULK4 Missense_Mutation p.K394N 0.12 tolerated(0.13) benign(0.025) TCGA-69-7973-01 3 45823661 45823661 A - SLC6A20 Frame_Shift_Del p.L59Cfs*70 0.19 TCGA-69-7973-01 3 58620041 58620041 C G FAM3D Missense_Mutation p.E214Q 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-69-7973-01 3 67578634 67578634 C A SUCLG2 Silent p.V113V 0.25 TCGA-69-7973-01 4 108575897 108575897 C A PAPSS1 Missense_Mutation p.C352F 0.22 deleterious(0) possibly_damaging(0.907) TCGA-69-7973-01 4 114276041 114276041 C A ANK2 Missense_Mutation p.S2089R 0.26 benign(0.091) TCGA-69-7973-01 4 13601827 13601827 C A BOD1L1 Missense_Mutation p.G2233C 0.19 possibly_damaging(0.881) TCGA-69-7973-01 4 147724697 147724697 G T TTC29 Missense_Mutation p.N414K 0.43 tolerated(0.29) benign(0.007) TCGA-69-7973-01 4 185681610 185681610 C A ACSL1 Missense_Mutation p.K561N 0.23 deleterious(0) probably_damaging(0.996) TCGA-69-7973-01 4 187540236 187540236 C T FAT1 Missense_Mutation p.A2502T 0.27 benign(0.297) TCGA-69-7973-01 4 190884267 190884267 G A FRG1 Missense_Mutation p.D254N 0.32 deleterious(0) probably_damaging(0.993) TCGA-69-7973-01 4 20618585 20618585 C G SLIT2 Missense_Mutation p.N1300K 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-69-7973-01 4 52945979 52945979 A G SPATA18 Missense_Mutation p.S417G 0.06 tolerated(0.08) benign(0.051) TCGA-69-7973-01 4 85676452 85676453 - A WDFY3 Frame_Shift_Ins p.L1842Ffs*52 0.18 TCGA-69-7973-01 4 89013464 89013464 G T ABCG2 Missense_Mutation p.H630Q 0.26 tolerated(0.07) benign(0.158) TCGA-69-7973-01 5 110446893 110446893 T A WDR36 Missense_Mutation p.D600E 0.22 tolerated(0.32) possibly_damaging(0.852) TCGA-69-7973-01 5 128430651 128430651 G T ISOC1 Missense_Mutation p.M64I 0.61 tolerated_low_confidence(0.27) benign(0) TCGA-69-7973-01 5 132234013 132234013 C T AFF4 Missense_Mutation p.G433E 0.35 tolerated(0.82) probably_damaging(0.997) TCGA-69-7973-01 5 135276998 135276998 C G FBXL21 RNA 0.19 TCGA-69-7973-01 5 140553780 140553780 C A PCDHB7 Missense_Mutation p.S455Y 0.37 deleterious_low_confidence(0) benign(0.276) TCGA-69-7973-01 5 140553781 140553781 C T PCDHB7 Silent p.S455S 0.36 TCGA-69-7973-01 5 140719188 140719188 G T PCDHGA2 Missense_Mutation p.G217V 0.12 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-69-7973-01 5 140788613 140788613 C A PCDHGB6 Silent p.R282R 0.37 TCGA-69-7973-01 5 147693707 147693707 C A SPINK7 Silent p.P44P 0.45 TCGA-69-7973-01 5 16465729 16465729 C G ZNF622 Missense_Mutation p.A16P 0.16 tolerated(0.15) benign(0.025) TCGA-69-7973-01 5 169454899 169454899 C A DOCK2 Missense_Mutation p.H1138Q 0.41 tolerated(0.26) benign(0.13) TCGA-69-7973-01 5 169812331 169812331 G A KCNMB1 Missense_Mutation p.L41F 0.51 tolerated(0.71) probably_damaging(1) TCGA-69-7973-01 5 21802310 21802310 C A CDH12 Missense_Mutation p.A408S 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-69-7973-01 5 33637732 33637732 G T ADAMTS12 Missense_Mutation p.T613N 0.35 deleterious(0.01) probably_damaging(1) TCGA-69-7973-01 5 96430716 96430716 C A LIX1 Missense_Mutation p.Q195H 0.15 tolerated(0.64) probably_damaging(0.991) TCGA-69-7973-01 6 102134228 102134228 G A GRIK2 Silent p.T317T 0.24 TCGA-69-7973-01 6 105609350 105609350 G T POPDC3 Silent p.A145A 0.20 TCGA-69-7973-01 6 132190591 132190591 G T ENPP1 Missense_Mutation p.R456L 0.19 deleterious(0) probably_damaging(1) TCGA-69-7973-01 6 148865380 148865380 C G SASH1 Missense_Mutation p.P925R 0.33 deleterious_low_confidence(0) possibly_damaging(0.467) TCGA-69-7973-01 6 165957053 165957053 A T PDE10A Nonsense_Mutation p.L24* 0.20 TCGA-69-7973-01 6 170065582 170065582 C A WDR27 Missense_Mutation p.Q261H 0.33 deleterious(0) possibly_damaging(0.791) TCGA-69-7973-01 6 30619113 30619113 C T C6orf136 Missense_Mutation p.R393C 0.43 deleterious(0) probably_damaging(0.993) TCGA-69-7973-01 6 32011571 32011571 G T TNXB Silent p.R258R 0.35 TCGA-69-7973-01 6 33634974 33634974 G T ITPR3 Missense_Mutation p.E540D 0.36 tolerated(0.33) benign(0.042) TCGA-69-7973-01 6 74121953 74121953 C A DDX43 Missense_Mutation p.R436S 0.22 deleterious(0) probably_damaging(0.961) TCGA-69-7973-01 7 101183182 101183182 G T COL26A1 Silent p.L152L 0.20 TCGA-69-7973-01 7 107254165 107254165 G T BCAP29 Missense_Mutation p.G253C 0.38 deleterious_low_confidence(0.01) benign(0.187) TCGA-69-7973-01 7 128446765 128446765 G T CCDC136 Missense_Mutation p.K424N 0.47 deleterious(0) probably_damaging(0.944) TCGA-69-7973-01 7 137569837 137569837 C G CREB3L2 Missense_Mutation p.G392R 0.29 deleterious(0) probably_damaging(0.999) TCGA-69-7973-01 7 143748001 143748001 T A OR2A5 Nonsense_Mutation p.C169* 0.38 TCGA-69-7973-01 7 1498916 1498916 T A MICALL2 Missense_Mutation p.E16V 0.35 deleterious(0) probably_damaging(0.99) TCGA-69-7973-01 7 20682890 20682890 C G ABCB5 Missense_Mutation p.A133G 0.41 tolerated(0.71) benign(0.019) TCGA-69-7973-01 7 20689721 20689721 G T ABCB5 Missense_Mutation p.S428I 0.45 deleterious(0) probably_damaging(0.943) TCGA-69-7973-01 7 20721179 20721179 C G ABCB5 Missense_Mutation p.R587G 0.41 deleterious(0) possibly_damaging(0.838) TCGA-69-7973-01 7 86415619 86415619 T A GRM3 Missense_Mutation p.Y171N 0.42 deleterious(0) probably_damaging(1) TCGA-69-7973-01 7 99725123 99725123 C T MBLAC1 Silent p.G35G 0.19 TCGA-69-7973-01 7 99764351 99764351 C A GAL3ST4 Missense_Mutation p.R68L 0.19 deleterious(0.01) possibly_damaging(0.563) TCGA-69-7973-01 8 102656358 102656358 G T GRHL2 Splice_Site p.X506_splice 0.11 TCGA-69-7973-01 8 10469183 10469183 G T RP1L1 Missense_Mutation p.Q809K 0.26 benign(0.432) TCGA-69-7973-01 8 106814044 106814044 G T ZFPM2 Missense_Mutation p.M578I 0.44 tolerated(0.24) benign(0.001) TCGA-69-7973-01 8 110454380 110454380 A T PKHD1L1 Missense_Mutation p.Y1450F 0.24 deleterious(0.01) possibly_damaging(0.893) TCGA-69-7973-01 8 11189033 11189033 G T SLC35G5 Missense_Mutation p.V140L 0.38 tolerated(0.08) possibly_damaging(0.45) TCGA-69-7973-01 8 119945465 119945465 G C TNFRSF11B Silent p.T35T 0.26 TCGA-69-7973-01 8 139890388 139890388 G T COL22A1 Missense_Mutation p.T88K 0.56 unknown(0) TCGA-69-7973-01 8 144641958 144641958 G T GSDMD Missense_Mutation p.G77C 0.51 tolerated(0.29) benign(0.025) TCGA-69-7973-01 8 16884776 16884776 G A MICU3 5'UTR 0.47 TCGA-69-7973-01 8 27151801 27151801 C A TRIM35 Silent p.R186R 0.29 TCGA-69-7973-01 8 43172496 43172496 G A POTEA Splice_Site 0.34 TCGA-69-7973-01 8 70512970 70512970 G T SULF1 Silent p.V289V 0.46 TCGA-69-7973-01 8 77617914 77617914 G T ZFHX4 Missense_Mutation p.D531Y 0.43 benign(0.116) TCGA-69-7973-01 8 77745609 77745609 G T ZFHX4 Missense_Mutation p.D1121Y 0.49 benign(0.116) TCGA-69-7973-01 8 94934845 94934845 G T PDP1 Silent p.L211L 0.18 TCGA-69-7973-01 9 111644402 111644402 T C IKBKAP Intron 0.58 TCGA-69-7973-01 9 119115071 119115071 C A PAPPA Missense_Mutation p.P1351T 0.39 tolerated(0.62) possibly_damaging(0.876) TCGA-69-7973-01 9 125437929 125437929 T A OR1L3 Missense_Mutation p.I174N 0.56 deleterious(0) probably_damaging(0.992) TCGA-69-7973-01 9 14784553 14784553 A T FREM1 Silent p.A1419A 0.31 TCGA-69-7973-01 9 34621488 34621488 G T ARID3C Silent p.P402P 0.27 TCGA-69-7973-01 9 35705818 35705820 CTT - TLN1 In_Frame_Del p.E1847del 0.27 TCGA-69-7973-01 9 79321405 79321405 C A PRUNE2 Missense_Mutation p.D1929Y 0.29 deleterious(0.01) probably_damaging(0.959) TCGA-69-7973-01 X 10094301 10094301 G T WWC3 Missense_Mutation p.Q687H 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-69-7973-01 X 107920744 107920744 G T COL4A5 Nonsense_Mutation p.E1275* 0.54 TCGA-69-7973-01 X 11187775 11187775 G C ARHGAP6 Missense_Mutation p.N553K 0.36 deleterious(0) probably_damaging(1) TCGA-69-7973-01 X 118220736 118220736 G T KIAA1210 Nonsense_Mutation p.S1486* 0.44 TCGA-69-7973-01 X 118221403 118221403 A G KIAA1210 Missense_Mutation p.S1264P 0.69 tolerated(0.27) benign(0.022) TCGA-69-7973-01 X 152612488 152612488 G T ZNF275 Silent p.L115L 0.65 TCGA-69-7973-01 X 152612494 152612494 C G ZNF275 Silent p.V117V 0.64 TCGA-69-7973-01 X 18845623 18845623 C A PPEF1 3'UTR 0.40 TCGA-69-7973-01 X 19410151 19410151 C A MAP3K15 Silent p.A800A 0.43 TCGA-69-7973-01 X 24690741 24690741 G T PCYT1B Silent p.G3G 0.31 TCGA-69-7973-01 X 31090017 31090017 G T FTHL17 Missense_Mutation p.D18E 0.38 tolerated(1) benign(0) TCGA-69-7973-01 X 37518838 37518838 G T LANCL3 Missense_Mutation p.C274F 0.33 tolerated(0.05) benign(0.332) TCGA-69-7973-01 X 48372650 48372650 G T PORCN Missense_Mutation p.A248S 0.33 tolerated(0.1) possibly_damaging(0.681) TCGA-69-7973-01 X 48681414 48681414 A T HDAC6 Missense_Mutation p.T869S 0.42 tolerated(0.75) benign(0.012) TCGA-69-7973-01 X 49458770 49458770 G A PAGE1 Missense_Mutation p.S33L 0.21 deleterious(0.04) possibly_damaging(0.849) TCGA-69-7973-01 X 49957416 49957416 C A AKAP4 Nonsense_Mutation p.E650* 0.35 TCGA-69-7973-01 X 53565946 53565946 G - HUWE1 Frame_Shift_Del p.H3910Tfs*14 0.40 TCGA-69-7973-01 X 54785081 54785081 C A ITIH6 Missense_Mutation p.D476Y 0.42 deleterious(0) probably_damaging(1) TCGA-69-7973-01 X 55247075 55247075 A T PAGE5 Missense_Mutation p.R15W 0.29 deleterious_low_confidence(0) possibly_damaging(0.632) TCGA-69-7973-01 X 55650676 55650676 C A FOXR2 Missense_Mutation p.Q178K 0.33 tolerated(0.23) benign(0.101) TCGA-69-7973-01 X 55779873 55779873 G T RRAGB Nonsense_Mutation p.E249* 0.40 TCGA-69-7973-01 X 64958955 64958955 G C MSN Missense_Mutation p.A490P 0.44 tolerated(0.21) possibly_damaging(0.864) TCGA-69-7973-01 X 78216192 78216192 C T P2RY10 Silent p.L59L 0.04 TCGA-69-7973-01 X 9000187 9000187 C A FAM9B Missense_Mutation p.K55N 0.33 tolerated(0.51) benign(0.014) TCGA-69-7974-01 10 105218003 105218003 C A CALHM1 Missense_Mutation p.W169L 0.29 tolerated(0.26) benign(0.058) TCGA-69-7974-01 10 105762387 105762387 A T SLK Missense_Mutation p.K484M 0.22 deleterious(0.01) possibly_damaging(0.806) TCGA-69-7974-01 10 106737136 106737136 T C SORCS3 Missense_Mutation p.I280T 0.04 deleterious(0.01) probably_damaging(0.998) TCGA-69-7974-01 10 108337309 108337309 C T SORCS1 Intron 0.11 TCGA-69-7974-01 10 108459130 108459130 C A SORCS1 Missense_Mutation p.D419Y 0.18 deleterious(0) probably_damaging(0.977) TCGA-69-7974-01 10 112350867 112350867 G C SMC3 Missense_Mutation p.D597H 0.33 tolerated(0.08) benign(0.105) TCGA-69-7974-01 10 112364106 112364106 G T SMC3 3'UTR 0.14 TCGA-69-7974-01 10 115528589 115528589 C A PLEKHS1 Missense_Mutation p.D119E 0.14 tolerated(0.12) benign(0.254) TCGA-69-7974-01 10 117075220 117075220 A G ATRNL1 Missense_Mutation p.Y1004C 0.13 deleterious(0.01) possibly_damaging(0.9) TCGA-69-7974-01 10 12136082 12136082 G T DHTKD1 Silent p.V390V 0.24 TCGA-69-7974-01 10 12136083 12136083 G T DHTKD1 Missense_Mutation p.G391C 0.24 deleterious(0.01) possibly_damaging(0.886) TCGA-69-7974-01 10 13647726 13647726 C T PRPF18 Silent p.L115L 0.16 TCGA-69-7974-01 10 17747010 17747010 G A STAM Missense_Mutation p.E348K 0.19 deleterious(0.01) benign(0.157) TCGA-69-7974-01 10 38345510 38345510 G T ZNF33A 3'UTR 0.20 TCGA-69-7974-01 10 50870702 50870702 G T CHAT Silent p.G617G 0.10 TCGA-69-7974-01 10 50944452 50944452 C A OGDHL Missense_Mutation p.R902L 0.19 deleterious(0.01) probably_damaging(0.988) TCGA-69-7974-01 10 50953480 50953480 C A OGDHL Missense_Mutation p.M513I 0.22 deleterious(0) probably_damaging(1) TCGA-69-7974-01 10 5435837 5435837 C T TUBAL3 Silent p.G328G 0.16 TCGA-69-7974-01 10 55581672 55581672 G T PCDH15 Missense_Mutation p.N1940K 0.22 deleterious_low_confidence(0.02) unknown(0) TCGA-69-7974-01 10 6060060 6060060 C G IL2RA Silent p.L250L 0.18 TCGA-69-7974-01 10 61824046 61824047 - C ANK3 Frame_Shift_Ins p.E4107Gfs*12 0.08 TCGA-69-7974-01 10 70514515 70514515 G T CCAR1 Missense_Mutation p.K463N 0.26 deleterious(0) benign(0.283) TCGA-69-7974-01 10 71078721 71078721 C T HK1 Intron 0.21 TCGA-69-7974-01 10 71103678 71103678 G A HK1 Silent p.R57R 0.12 TCGA-69-7974-01 10 82034857 82034857 C A MAT1A Missense_Mutation p.K289N 0.33 deleterious(0) probably_damaging(1) TCGA-69-7974-01 10 87482882 87482882 C A GRID1 Silent p.V625V 0.12 TCGA-69-7974-01 10 98064405 98064405 T A DNTT Missense_Mutation p.F51I 0.21 deleterious(0) probably_damaging(1) TCGA-69-7974-01 11 102647123 102647123 C A MMP10 Missense_Mutation p.V274L 0.24 tolerated(0.35) benign(0.003) TCGA-69-7974-01 11 103062245 103062245 G A DYNC2H1 Splice_Site p.X2480_splice 0.40 TCGA-69-7974-01 11 113230106 113230106 G T TTC12 Missense_Mutation p.D490Y 0.29 deleterious(0.03) benign(0.281) TCGA-69-7974-01 11 113286296 113286296 C A DRD2 Silent p.V190V 0.29 TCGA-69-7974-01 11 123676119 123676119 A C OR6M1 Silent p.T313T 0.30 TCGA-69-7974-01 11 124294404 124294404 A C OR8B4 Missense_Mutation p.Y122D 0.26 deleterious_low_confidence(0) possibly_damaging(0.771) TCGA-69-7974-01 11 124861402 124861402 G - CCDC15 Frame_Shift_Del p.R653Efs*31 0.19 TCGA-69-7974-01 11 130343219 130343219 G T ADAMTS15 Missense_Mutation p.V786L 0.21 deleterious(0.01) possibly_damaging(0.827) TCGA-69-7974-01 11 134212791 134212791 A C GLB1L2 Missense_Mutation p.Y77S 0.24 tolerated(0.07) possibly_damaging(0.859) TCGA-69-7974-01 11 19259535 19259535 C G E2F8 Missense_Mutation p.G54R 0.12 tolerated(0.1) possibly_damaging(0.463) TCGA-69-7974-01 11 3114185 3114185 G T OSBPL5 Missense_Mutation p.R682S 0.27 deleterious(0) possibly_damaging(0.827) TCGA-69-7974-01 11 40137064 40137064 C T LRRC4C Missense_Mutation p.R260Q 0.29 tolerated(0.13) benign(0.312) TCGA-69-7974-01 11 47369005 47369005 G T MYBPC3 Missense_Mutation p.L293M 0.26 deleterious(0) possibly_damaging(0.895) TCGA-69-7974-01 11 48285761 48285761 G T OR4X1 Missense_Mutation p.A117S 0.32 deleterious(0.02) possibly_damaging(0.905) TCGA-69-7974-01 11 5068583 5068583 T A OR52J3 Silent p.L276L 0.36 TCGA-69-7974-01 11 51516002 51516002 C A OR4C46 Missense_Mutation p.H241N 0.20 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-69-7974-01 11 55579339 55579339 A G OR5L1 Missense_Mutation p.T133A 0.23 deleterious(0.04) benign(0.027) TCGA-69-7974-01 11 55999873 55999873 G T OR5T2 Silent p.A263A 0.26 TCGA-69-7974-01 11 57319948 57319948 C T UBE2L6 Silent p.P115P 0.10 TCGA-69-7974-01 11 59828739 59828739 C A MS4A3 Missense_Mutation p.P36T 0.25 tolerated(0.1) possibly_damaging(0.808) TCGA-69-7974-01 11 60183382 60183382 A T MS4A14 Missense_Mutation p.D347V 0.08 tolerated(0.52) benign(0.003) TCGA-69-7974-01 11 60268520 60268520 G C MS4A12 Silent p.V93V 0.20 TCGA-69-7974-01 11 61488327 61488327 G T DAGLA Missense_Mutation p.R91L 0.24 deleterious(0) probably_damaging(0.991) TCGA-69-7974-01 11 61563832 61563832 A T FEN1 Missense_Mutation p.Q333H 0.31 tolerated(0.1) benign(0.001) TCGA-69-7974-01 11 62294898 62294898 C G AHNAK Missense_Mutation p.D2331H 0.20 probably_damaging(0.987) TCGA-69-7974-01 11 62297165 62297165 T G AHNAK Missense_Mutation p.Q1575P 0.33 probably_damaging(0.931) TCGA-69-7974-01 11 62563573 62563573 C G NXF1 Missense_Mutation p.V476L 0.25 tolerated(1) benign(0) TCGA-69-7974-01 11 640430 640430 T C DRD4 Missense_Mutation p.F363L 0.29 deleterious(0.02) probably_damaging(0.961) TCGA-69-7974-01 11 64323681 64323681 G C SLC22A11 Silent p.L70L 0.27 TCGA-69-7974-01 11 66620111 66620111 T C PC Missense_Mutation p.R542G 0.29 deleterious(0) probably_damaging(0.933) TCGA-69-7974-01 11 67159629 67159629 C T RAD9A Intron 0.31 TCGA-69-7974-01 11 70281797 70281797 C T CTTN Silent p.C575C 0.25 TCGA-69-7974-01 11 70331739 70331739 C T SHANK2 Silent p.K1554K 0.27 TCGA-69-7974-01 11 73817481 73817481 G A C2CD3 Missense_Mutation p.L674F 0.14 deleterious(0.02) possibly_damaging(0.86) TCGA-69-7974-01 11 7654166 7654166 G C PPFIBP2 Splice_Site p.X379_splice 0.20 TCGA-69-7974-01 11 78154805 78154805 C G NARS2 Splice_Site p.X389_splice 0.08 TCGA-69-7974-01 11 8161562 8161562 T C RIC3 Silent p.P101P 0.38 TCGA-69-7974-01 11 84996390 84996390 C A DLG2 Missense_Mutation p.E20D 0.26 deleterious_low_confidence(0) benign(0.023) TCGA-69-7974-01 11 8704331 8704331 A T RPL27A 5'UTR 0.35 TCGA-69-7974-01 11 89531462 89531462 G T TRIM49 Missense_Mutation p.L399M 0.16 tolerated(0.22) benign(0.216) TCGA-69-7974-01 11 92703026 92703026 G C MTNR1B Silent p.A45A 0.25 TCGA-69-7974-01 11 94212910 94212910 T G MRE11A Missense_Mutation p.Y111S 0.27 deleterious(0) probably_damaging(0.937) TCGA-69-7974-01 11 94320403 94320403 G A PIWIL4 Missense_Mutation p.V302I 0.22 tolerated(0.07) possibly_damaging(0.534) TCGA-69-7974-01 11 94554829 94554829 C A AMOTL1 Missense_Mutation p.Q419K 0.12 tolerated(0.7) benign(0.103) TCGA-69-7974-01 11 95532434 95532434 G T CEP57 Missense_Mutation p.M28I 0.33 tolerated(0.55) benign(0.002) TCGA-69-7974-01 12 106460879 106460879 G A NUAK1 Missense_Mutation p.R563W 0.27 deleterious(0) possibly_damaging(0.891) TCGA-69-7974-01 12 113444257 113444257 A G OAS2 Missense_Mutation p.Y503C 0.43 deleterious(0) probably_damaging(1) TCGA-69-7974-01 12 124824557 124824557 G A NCOR2 Silent p.V1894V 0.31 TCGA-69-7974-01 12 130648515 130648515 G A FZD10 Missense_Mutation p.G343D 0.08 deleterious(0) probably_damaging(1) TCGA-69-7974-01 12 132334530 132334530 C G MMP17 Missense_Mutation p.P463R 0.37 deleterious(0.01) probably_damaging(0.914) TCGA-69-7974-01 12 25380275 25380275 T A KRAS Missense_Mutation p.Q61H 0.51 deleterious(0) benign(0.371) TCGA-69-7974-01 12 31945027 31945027 G A H3F3C Missense_Mutation p.A25V 0.56 tolerated_low_confidence(0.07) benign(0.197) TCGA-69-7974-01 12 39734749 39734749 C A KIF21A Missense_Mutation p.R690L 0.27 deleterious(0.03) possibly_damaging(0.491) TCGA-69-7974-01 12 46211516 46211517 TG - ARID2 Frame_Shift_Del p.L161Cfs*11 0.27 TCGA-69-7974-01 12 46596869 46596869 C A SLC38A1 Missense_Mutation p.V276L 0.22 deleterious(0.03) possibly_damaging(0.674) TCGA-69-7974-01 12 53070085 53070085 C A KRT1 Missense_Mutation p.R483S 0.47 deleterious(0) possibly_damaging(0.842) TCGA-69-7974-01 12 54367257 54367257 G T HOXC11 Nonsense_Mutation p.E78* 0.49 TCGA-69-7974-01 12 58019102 58019102 G C SLC26A10 Missense_Mutation p.V488L 0.54 deleterious(0.04) possibly_damaging(0.739) TCGA-69-7974-01 12 69145860 69145860 C A SLC35E3 Missense_Mutation p.L188M 0.10 deleterious(0) probably_damaging(0.934) TCGA-69-7974-01 12 70004149 70004149 C T LRRC10 Missense_Mutation p.R157H 0.09 deleterious(0.03) benign(0.035) TCGA-69-7974-01 12 7015772 7015772 A G LRRC23 Missense_Mutation p.I146V 0.35 deleterious(0.04) possibly_damaging(0.562) TCGA-69-7974-01 12 80665514 80665514 A G OTOGL Missense_Mutation p.T860A 0.08 deleterious(0) possibly_damaging(0.55) TCGA-69-7974-01 12 91363869 91363869 G C EPYC Missense_Mutation p.D250E 0.27 deleterious(0.03) benign(0.007) TCGA-69-7974-01 13 101287291 101287291 T C TMTC4 Missense_Mutation p.H454R 0.09 tolerated(0.46) benign(0.001) TCGA-69-7974-01 13 101714412 101714412 C A NALCN Missense_Mutation p.A1555S 0.12 tolerated(0.07) possibly_damaging(0.776) TCGA-69-7974-01 13 103443272 103443272 A G KDELC1 Silent p.I354I 0.14 TCGA-69-7974-01 13 111371692 111371692 G A ING1 Missense_Mutation p.G228S 0.08 tolerated(0.12) probably_damaging(1) TCGA-69-7974-01 13 19751587 19751587 G A TUBA3C Missense_Mutation p.T179M 0.13 deleterious_low_confidence(0.03) probably_damaging(0.952) TCGA-69-7974-01 13 26535748 26535748 G A ATP8A2 Silent p.L1073L 0.21 TCGA-69-7974-01 13 36049916 36049916 G T MAB21L1 Silent p.S120S 0.27 TCGA-69-7974-01 13 37678512 37678512 G T CSNK1A1L Nonsense_Mutation p.Y294* 0.20 TCGA-69-7974-01 13 39451374 39451374 G A FREM2 Missense_Mutation p.A2889T 0.13 tolerated(0.42) benign(0.002) TCGA-69-7974-01 13 42871266 42871266 G C AKAP11 Missense_Mutation p.C100S 0.29 deleterious(0.02) possibly_damaging(0.796) TCGA-69-7974-01 13 43469228 43469228 G T EPSTI1 Missense_Mutation p.L289M 0.26 deleterious(0) probably_damaging(1) TCGA-69-7974-01 13 46288400 46288400 A G SPERT Missense_Mutation p.I414V 0.21 tolerated(0.4) probably_damaging(0.997) TCGA-69-7974-01 13 46716539 46716539 C A LCP1 Missense_Mutation p.V464L 0.13 deleterious(0.02) benign(0.35) TCGA-69-7974-01 13 53039445 53039445 G A CKAP2 Missense_Mutation p.D442N 0.22 deleterious(0.01) benign(0.004) TCGA-69-7974-01 13 53420387 53420387 G T PCDH8 Missense_Mutation p.R729S 0.09 tolerated(0.68) benign(0.006) TCGA-69-7974-01 13 53422312 53422312 T A PCDH8 Missense_Mutation p.D87V 0.11 deleterious(0) possibly_damaging(0.74) TCGA-69-7974-01 13 66878940 66878940 G T PCDH9 Missense_Mutation p.S1187R 0.09 tolerated(1) possibly_damaging(0.504) TCGA-69-7974-01 13 72063271 72063271 G A DACH1 Missense_Mutation p.P529L 0.27 benign(0.005) TCGA-69-7974-01 14 107131462 107131462 C A IGHV3-66 Missense_Mutation p.W7L 0.23 tolerated_low_confidence(0.12) benign(0.062) TCGA-69-7974-01 14 19563587 19563587 A G POTEG Intron 0.09 TCGA-69-7974-01 14 20248946 20248946 T C OR4M1 Silent p.H155H 0.16 TCGA-69-7974-01 14 20876563 20876563 T A TEP1 Silent p.P12P 0.26 TCGA-69-7974-01 14 20923770 20923770 C A APEX1 5'UTR 0.19 TCGA-69-7974-01 14 22987466 22987466 G T TRAJ26 Missense_Mutation p.R15I 0.17 unknown(0) TCGA-69-7974-01 14 30066937 30066937 G A PRKD1 Missense_Mutation p.R732W 0.16 deleterious(0) probably_damaging(1) TCGA-69-7974-01 14 39531014 39531014 T C SEC23A Missense_Mutation p.H487R 0.20 deleterious(0.02) benign(0.399) TCGA-69-7974-01 14 44975613 44975613 C A FSCB Missense_Mutation p.S193I 0.23 deleterious(0) probably_damaging(0.965) TCGA-69-7974-01 14 44976236 44976236 T A FSCB 5'UTR 0.27 TCGA-69-7974-01 14 47389255 47389255 G A MDGA2 Missense_Mutation p.A733V 0.22 deleterious(0) possibly_damaging(0.453) TCGA-69-7974-01 14 47389256 47389256 C T MDGA2 Missense_Mutation p.A733T 0.22 deleterious(0) possibly_damaging(0.691) TCGA-69-7974-01 14 52535582 52535582 C T NID2 Missense_Mutation p.G44E 0.06 deleterious(0) probably_damaging(0.911) TCGA-69-7974-01 14 52734790 52734790 C T PTGDR Silent p.A86A 0.25 TCGA-69-7974-01 14 55251336 55251336 G T SAMD4A Missense_Mutation p.G709V 0.16 deleterious(0) possibly_damaging(0.856) TCGA-69-7974-01 14 59108400 59108400 G T DACT1 Missense_Mutation p.S190I 0.17 deleterious(0) probably_damaging(0.999) TCGA-69-7974-01 14 71275549 71275549 G A MAP3K9 Missense_Mutation p.R114C 0.23 tolerated(0.09) benign(0.258) TCGA-69-7974-01 14 94936049 94936049 C A SERPINA9 Missense_Mutation p.Q61H 0.24 deleterious(0.01) benign(0.439) TCGA-69-7974-01 14 95556787 95556787 C A DICER1 3'UTR 0.40 TCGA-69-7974-01 15 40951637 40951637 C G CASC5 Missense_Mutation p.Q2298E 0.29 deleterious(0.02) possibly_damaging(0.58) TCGA-69-7974-01 15 42005391 42005391 C T MGA Nonsense_Mutation p.R1043* 0.40 TCGA-69-7974-01 15 42050012 42050012 A - MGA Frame_Shift_Del p.A2391Qfs*13 0.28 TCGA-69-7974-01 15 42133062 42133062 G C PLA2G4B Missense_Mutation p.A335P 0.32 tolerated(0.66) benign(0.003) TCGA-69-7974-01 15 45007794 45007797 TCTT - B2M Frame_Shift_Del p.F82Ifs*20 0.37 TCGA-69-7974-01 15 49325203 49325203 C T SECISBP2L Missense_Mutation p.R208Q 0.10 deleterious_low_confidence(0.01) probably_damaging(0.946) TCGA-69-7974-01 15 51514549 51514549 C A CYP19A1 Missense_Mutation p.D209Y 0.35 deleterious(0) probably_damaging(0.99) TCGA-69-7974-01 15 74328003 74328003 G T PML Intron 0.33 TCGA-69-7974-01 15 74610981 74610981 C A CCDC33 Intron 0.46 TCGA-69-7974-01 15 80869267 80869267 G C ARNT2 Missense_Mutation p.G525A 0.20 tolerated(0.26) probably_damaging(0.91) TCGA-69-7974-01 15 85121395 85121395 G T LINC00933 RNA 0.18 TCGA-69-7974-01 15 90931603 90931603 G A IQGAP1 Silent p.L10L 0.18 TCGA-69-7974-01 16 11375098 11375098 T A PRM1 5'UTR 0.23 TCGA-69-7974-01 16 20563602 20563602 G T ACSM2B Missense_Mutation p.A253D 0.22 tolerated(0.08) benign(0.263) TCGA-69-7974-01 16 23079849 23079849 C A USP31 Missense_Mutation p.G1193W 0.24 deleterious_low_confidence(0.01) probably_damaging(0.96) TCGA-69-7974-01 16 23080836 23080836 T A USP31 Nonsense_Mutation p.R864* 0.16 TCGA-69-7974-01 16 23706079 23706079 C T ERN2 Silent p.E738E 0.17 TCGA-69-7974-01 16 23724581 23724581 C T ERN2 Silent p.P24P 0.15 TCGA-69-7974-01 16 27544611 27544611 C A GTF3C1 Splice_Site p.X283_splice 0.27 TCGA-69-7974-01 16 28844165 28844165 G T ATXN2L Missense_Mutation p.R539L 0.21 deleterious(0.02) benign(0.008) TCGA-69-7974-01 16 28847981 28847981 G T ATXN2L Intron 0.14 TCGA-69-7974-01 16 28969955 28969955 C T NFATC2IP Intron 0.18 TCGA-69-7974-01 16 30500470 30500470 C T ITGAL Silent p.L358L 0.11 TCGA-69-7974-01 16 31202352 31202352 G T FUS Missense_Mutation p.G488C 0.24 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-69-7974-01 16 46727058 46727058 C T ORC6 Missense_Mutation p.P138L 0.18 deleterious(0) probably_damaging(0.997) TCGA-69-7974-01 16 48256673 48256673 G T ABCC11 Missense_Mutation p.L205I 0.26 deleterious(0.02) possibly_damaging(0.654) TCGA-69-7974-01 16 55855375 55855375 G A CES1 Missense_Mutation p.R200C 0.16 deleterious(0) possibly_damaging(0.776) TCGA-69-7974-01 16 56623854 56623854 G T MT3 Intron 0.09 TCGA-69-7974-01 16 56623855 56623855 C A MT3 Intron 0.09 TCGA-69-7974-01 16 56685814 56685814 G A MT1B 5'UTR 0.14 TCGA-69-7974-01 16 56921836 56921836 G A SLC12A3 Splice_Site p.X727_splice 0.15 TCGA-69-7974-01 16 58018631 58018631 C A TEPP Missense_Mutation p.P181H 0.17 deleterious(0.03) probably_damaging(1) TCGA-69-7974-01 16 70908744 70908744 C G HYDIN Missense_Mutation p.E3546Q 0.44 possibly_damaging(0.859) TCGA-69-7974-01 16 71423837 71423837 G C CALB2 3'UTR 0.23 TCGA-69-7974-01 16 72830330 72830330 G T ZFHX3 Missense_Mutation p.P2084Q 0.08 benign(0.266) TCGA-69-7974-01 16 8722955 8722955 A G METTL22 Missense_Mutation p.I168V 0.14 tolerated(1) benign(0.006) TCGA-69-7974-01 17 10439908 10439908 C G MYH2 Missense_Mutation p.G638A 0.15 tolerated(0.14) benign(0.003) TCGA-69-7974-01 17 26096027 26096027 G A NOS2 Silent p.R670R 0.14 TCGA-69-7974-01 17 31618867 31618867 C A ASIC2 Missense_Mutation p.W89C 0.16 deleterious(0) probably_damaging(0.999) TCGA-69-7974-01 17 34964728 34964728 G T MRM1 Missense_Mutation p.E313D 0.37 tolerated_low_confidence(0.14) benign(0.003) TCGA-69-7974-01 17 3853845 3853845 G T ATP2A3 Missense_Mutation p.P197H 0.30 deleterious(0.03) possibly_damaging(0.757) TCGA-69-7974-01 17 39150240 39150240 G T KRTAP3-3 Missense_Mutation p.P37Q 0.08 deleterious_low_confidence(0) benign(0.301) TCGA-69-7974-01 17 39155996 39155996 G T KRTAP3-2 Missense_Mutation p.P37Q 0.08 deleterious_low_confidence(0) benign(0.301) TCGA-69-7974-01 17 40653296 40653296 C T ATP6V0A1 Missense_Mutation p.R667C 0.11 tolerated(0.2) possibly_damaging(0.714) TCGA-69-7974-01 17 40823464 40823464 C T PLEKHH3 Missense_Mutation p.A397T 0.09 tolerated(0.05) unknown(0) TCGA-69-7974-01 17 40837068 40837068 C - CNTNAP1 Frame_Shift_Del p.F141Lfs*21 0.14 TCGA-69-7974-01 17 41020306 41020306 C T AOC4P RNA 0.11 TCGA-69-7974-01 17 42168827 42168827 C T HDAC5 Missense_Mutation p.E401K 0.10 deleterious(0.03) benign(0.113) TCGA-69-7974-01 17 44073922 44073922 C A MAPT Silent p.S573S 0.13 TCGA-69-7974-01 17 44248858 44248858 C A KANSL1 Nonsense_Mutation p.E218* 0.07 TCGA-69-7974-01 17 45925440 45925440 G T SP6 Nonsense_Mutation p.S119* 0.39 TCGA-69-7974-01 17 46799792 46799792 C A PRAC1 5'UTR 0.16 TCGA-69-7974-01 17 46804240 46804240 G C HOXB13 Missense_Mutation p.S256W 0.12 deleterious(0) probably_damaging(0.983) TCGA-69-7974-01 17 48674226 48674226 G T CACNA1G Missense_Mutation p.R1067L 0.36 deleterious(0.04) benign(0.008) TCGA-69-7974-01 17 48917845 48917845 C A WFIKKN2 Missense_Mutation p.A399E 0.42 tolerated(1) benign(0.003) TCGA-69-7974-01 17 49119004 49119004 C G SPAG9 Missense_Mutation p.R200P 0.34 deleterious(0.03) benign(0.088) TCGA-69-7974-01 17 5085270 5085270 T A ZNF594 Missense_Mutation p.Y761F 0.09 tolerated(0.09) benign(0) TCGA-69-7974-01 17 56356753 56356753 A T MPO Missense_Mutation p.F195I 0.48 deleterious(0.03) benign(0.152) TCGA-69-7974-01 17 57842339 57842339 A T VMP1 Missense_Mutation p.H141L 0.06 deleterious(0) probably_damaging(0.977) TCGA-69-7974-01 17 59967197 59967197 T C INTS2 Missense_Mutation p.Y653C 0.16 deleterious(0) probably_damaging(0.999) TCGA-69-7974-01 17 5998460 5998460 G C WSCD1 Missense_Mutation p.E256Q 0.21 deleterious(0.01) benign(0.405) TCGA-69-7974-01 17 71334835 71334835 G T SDK2 Missense_Mutation p.P2137H 0.14 tolerated_low_confidence(0.15) probably_damaging(0.999) TCGA-69-7974-01 17 73775159 73775159 T A H3F3B Missense_Mutation p.T33S 0.08 tolerated_low_confidence(0.06) benign(0) TCGA-69-7974-01 17 7574027 7574027 C A TP53 Missense_Mutation p.G334W 0.34 deleterious(0) probably_damaging(0.998) TCGA-69-7974-01 17 78163550 78163550 A T CARD14 Splice_Site p.X282_splice 0.10 TCGA-69-7974-01 18 29041194 29041194 C A DSG3 Nonsense_Mutation p.S273* 0.47 TCGA-69-7974-01 18 29041195 29041195 A G DSG3 Silent p.S273S 0.47 TCGA-69-7974-01 18 34322707 34322707 C A FHOD3 Missense_Mutation p.A1081E 0.35 deleterious(0) possibly_damaging(0.553) TCGA-69-7974-01 18 42530719 42530719 G C SETBP1 Missense_Mutation p.E472Q 0.37 tolerated(0.07) probably_damaging(0.996) TCGA-69-7974-01 18 54305660 54305660 C T TXNL1 Silent p.V4V 0.36 TCGA-69-7974-01 18 56203487 56203487 C A ALPK2 Missense_Mutation p.R1311I 0.44 deleterious(0) possibly_damaging(0.875) TCGA-69-7974-01 18 61471728 61471728 C A SERPINB7 Silent p.T334T 0.24 TCGA-69-7974-01 18 70209165 70209165 G C CBLN2 Silent p.A77A 0.31 TCGA-69-7974-01 19 11565536 11565536 C A ELAVL3 Silent p.L303L 0.11 TCGA-69-7974-01 19 14077486 14077486 C T RFX1 Missense_Mutation p.D604N 0.15 tolerated(0.06) benign(0.067) TCGA-69-7974-01 19 15566966 15566966 C A RASAL3 Missense_Mutation p.R557I 0.09 deleterious(0.02) possibly_damaging(0.859) TCGA-69-7974-01 19 16666164 16666164 G A SLC35E1 Silent p.V267V 0.17 TCGA-69-7974-01 19 17014426 17014426 C A CPAMD8 Missense_Mutation p.S1519I 0.23 deleterious(0) possibly_damaging(0.835) TCGA-69-7974-01 19 17534512 17534512 C G MVB12A Missense_Mutation p.L182V 0.22 tolerated(0.51) benign(0.053) TCGA-69-7974-01 19 17654393 17654393 A G FAM129C Missense_Mutation p.I534V 0.22 tolerated(0.12) probably_damaging(0.997) TCGA-69-7974-01 19 17937621 17937621 G A JAK3 Silent p.S1102S 0.20 TCGA-69-7974-01 19 19932470 19932470 T A ZNF506 5'UTR 0.07 TCGA-69-7974-01 19 2214581 2214581 T G DOT1L Missense_Mutation p.C637G 0.06 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-69-7974-01 19 22941360 22941360 G A ZNF99 Nonsense_Mutation p.Q451* 0.29 TCGA-69-7974-01 19 30935349 30935349 C A ZNF536 Missense_Mutation p.R294S 0.29 deleterious(0) probably_damaging(0.999) TCGA-69-7974-01 19 3121014 3121014 G T GNA11 Missense_Mutation p.R306L 0.13 tolerated(0.05) possibly_damaging(0.863) TCGA-69-7974-01 19 31768676 31768676 G T TSHZ3 Silent p.R675R 0.25 TCGA-69-7974-01 19 36046363 36046363 G A ATP4A Silent p.I712I 0.11 TCGA-69-7974-01 19 36054119 36054119 C A ATP4A Missense_Mutation p.A70S 0.20 tolerated(0.28) benign(0.202) TCGA-69-7974-01 19 36275140 36275140 G T ARHGAP33 Silent p.S496S 0.21 TCGA-69-7974-01 19 36435668 36435668 G T LRFN3 Missense_Mutation p.G545V 0.24 deleterious(0) probably_damaging(0.997) TCGA-69-7974-01 19 36509848 36509848 G T CLIP3 Silent p.R379R 0.07 TCGA-69-7974-01 19 37405877 37405877 G T ZNF829 Missense_Mutation p.A110E 0.16 deleterious(0.05) benign(0.025) TCGA-69-7974-01 19 375963 375964 - C THEG Frame_Shift_Ins p.D3Gfs*14 0.30 TCGA-69-7974-01 19 39096339 39096339 G T MAP4K1 Missense_Mutation p.P411H 0.16 tolerated(0.17) benign(0.417) TCGA-69-7974-01 19 39759422 39759422 G A IFNL2 Missense_Mutation p.R39K 0.10 tolerated(0.46) benign(0.017) TCGA-69-7974-01 19 40336995 40336995 T A FBL 5'UTR 0.20 TCGA-69-7974-01 19 44778041 44778041 A C ZNF233 Missense_Mutation p.T410P 0.13 tolerated(0.14) benign(0.425) TCGA-69-7974-01 19 44934475 44934475 G C ZNF229 Missense_Mutation p.Q161E 0.22 tolerated(0.35) benign(0.018) TCGA-69-7974-01 19 45017236 45017236 G T CEACAM20 RNA 0.19 TCGA-69-7974-01 19 48558226 48558226 C A PLA2G4C Missense_Mutation p.W456C 0.20 tolerated(0.13) possibly_damaging(0.753) TCGA-69-7974-01 19 50156582 50156582 C G SCAF1 Missense_Mutation p.P979R 0.37 unknown(0) TCGA-69-7974-01 19 51327042 51327042 C A KLK1 5'Flank 0.25 TCGA-69-7974-01 19 51649369 51649369 G A SIGLEC7 Missense_Mutation p.E340K 0.15 tolerated(0.25) benign(0.032) TCGA-69-7974-01 19 5219424 5219424 G T PTPRS Missense_Mutation p.Q1274K 0.26 tolerated(0.07) benign(0.441) TCGA-69-7974-01 19 52852423 52852423 G C ZNF610 5'UTR 0.13 TCGA-69-7974-01 19 53958032 53958032 G T ZNF761 RNA 0.11 TCGA-69-7974-01 19 55107691 55107691 G A LILRA1 Silent p.P332P 0.20 TCGA-69-7974-01 19 56972076 56972076 G T ZNF667 Silent p.R48R 0.21 TCGA-69-7974-01 19 57328222 57328222 C T PEG3 Missense_Mutation p.G530S 0.14 tolerated(0.06) benign(0.044) TCGA-69-7974-01 19 57888711 57888711 C T ZNF547 Nonsense_Mutation p.Q123* 0.19 TCGA-69-7974-01 19 5832237 5832237 G C FUT6 Nonsense_Mutation p.Y114* 0.21 TCGA-69-7974-01 19 58596479 58596479 G T ZSCAN18 Missense_Mutation p.T425N 0.15 tolerated(0.18) possibly_damaging(0.504) TCGA-69-7974-01 19 6414097 6414097 G C KHSRP 3'UTR 0.25 TCGA-69-7974-01 19 6896492 6896492 C A EMR1 Missense_Mutation p.Q60K 0.21 tolerated(0.74) benign(0.003) TCGA-69-7974-01 19 7619157 7619157 A T PNPLA6 Missense_Mutation p.S832C 0.11 deleterious(0.01) benign(0.031) TCGA-69-7974-01 19 8548046 8548046 C G HNRNPM Missense_Mutation p.I375M 0.20 tolerated(0.82) benign(0.004) TCGA-69-7974-01 19 8841968 8841968 G A OR2Z1 Missense_Mutation p.C193Y 0.18 deleterious(0.01) benign(0.004) TCGA-69-7974-01 19 9060459 9060459 G T MUC16 Nonsense_Mutation p.S8996* 0.23 TCGA-69-7974-01 19 9071390 9071390 G T MUC16 Silent p.S5352S 0.20 TCGA-69-7974-01 19 9089803 9089803 G C MUC16 Nonsense_Mutation p.S671* 0.23 TCGA-69-7974-01 19 9212999 9212999 C A OR7G2 Missense_Mutation p.R328S 0.17 tolerated(0.07) benign(0.086) TCGA-69-7974-01 19 9271755 9271755 C T ZNF317 Silent p.A478A 0.15 TCGA-69-7974-01 1 114319928 114319928 C A RSBN1 Missense_Mutation p.R521M 0.16 deleterious(0.02) probably_damaging(0.997) TCGA-69-7974-01 1 115216274 115216274 C T AMPD1 Missense_Mutation p.G724R 0.06 deleterious(0) probably_damaging(0.983) TCGA-69-7974-01 1 115828972 115828972 C T NGF Missense_Mutation p.A149T 0.26 deleterious(0) probably_damaging(0.999) TCGA-69-7974-01 1 117544468 117544468 T A CD101 Missense_Mutation p.F10Y 0.11 deleterious(0) benign(0.062) TCGA-69-7974-01 1 117616346 117616346 G T TTF2 Missense_Mutation p.W94C 0.08 deleterious(0.03) benign(0.093) TCGA-69-7974-01 1 120050050 120050050 C G HSD3B1 5'UTR 0.23 TCGA-69-7974-01 1 12429654 12429654 G A VPS13D Missense_Mutation p.A3569T 0.26 probably_damaging(0.99) TCGA-69-7974-01 1 12908139 12908139 C A HNRNPCL1 Missense_Mutation p.A2S 0.05 tolerated(0.14) benign(0.186) TCGA-69-7974-01 1 12908140 12908140 C A HNRNPCL1 Translation_Start_Site p.M1? 0.05 tolerated_low_confidence(0.07) benign(0.145) TCGA-69-7974-01 1 12979745 12979745 T C PRAMEF7 Missense_Mutation p.S313P 0.06 probably_damaging(0.994) TCGA-69-7974-01 1 12979927 12979927 C G PRAMEF7 Missense_Mutation p.S373R 0.15 probably_damaging(0.963) TCGA-69-7974-01 1 150527914 150527914 C A ADAMTSL4 Missense_Mutation p.S415Y 0.24 tolerated(0.07) probably_damaging(0.949) TCGA-69-7974-01 1 152282972 152282972 C T FLG Missense_Mutation p.G1464R 0.46 probably_damaging(0.953) TCGA-69-7974-01 1 152284251 152284251 G T FLG Missense_Mutation p.H1037Q 0.40 probably_damaging(0.995) TCGA-69-7974-01 1 152286063 152286063 G T FLG Missense_Mutation p.D433E 0.42 possibly_damaging(0.694) TCGA-69-7974-01 1 154541946 154541946 G C CHRNB2 Missense_Mutation p.G25R 0.36 deleterious(0.04) benign(0.128) TCGA-69-7974-01 1 158298005 158298005 G T CD1B 3'UTR 0.44 TCGA-69-7974-01 1 158449829 158449829 G T OR10R2 Silent p.L54L 0.35 TCGA-69-7974-01 1 159277575 159277575 A G FCER1A Silent p.P209P 0.45 TCGA-69-7974-01 1 159284147 159284147 C A OR10J3 Missense_Mutation p.Q101H 0.47 deleterious(0) benign(0.299) TCGA-69-7974-01 1 159858145 159858145 G A CCDC19 Silent p.T138T 0.13 TCGA-69-7974-01 1 160160607 160160607 G T CASQ1 Silent p.L22L 0.40 TCGA-69-7974-01 1 16893812 16893812 C A NBPF1 Nonsense_Mutation p.E901* 0.02 TCGA-69-7974-01 1 16935166 16935166 C G NBPF1 5'UTR 0.09 TCGA-69-7974-01 1 171752883 171752883 C T METTL13 Silent p.L53L 0.11 TCGA-69-7974-01 1 177250061 177250061 G T BRINP2 Missense_Mutation p.E583D 0.50 tolerated(0.33) probably_damaging(0.978) TCGA-69-7974-01 1 19180711 19180711 C T TAS1R2 Nonsense_Mutation p.W418* 0.12 TCGA-69-7974-01 1 196658664 196658664 A G CFH Missense_Mutation p.H360R 0.39 tolerated(0.2) benign(0.001) TCGA-69-7974-01 1 196659215 196659215 G T CFH Missense_Mutation p.L394F 0.45 deleterious(0.01) possibly_damaging(0.888) TCGA-69-7974-01 1 196927039 196927039 G T CFHR2 Missense_Mutation p.G150V 0.14 deleterious(0) benign(0.055) TCGA-69-7974-01 1 200567530 200567530 T A KIF14 Missense_Mutation p.Q795L 0.51 deleterious(0) possibly_damaging(0.517) TCGA-69-7974-01 1 201844004 201844004 G C IPO9 Missense_Mutation p.E960Q 0.35 tolerated(0.46) benign(0.082) TCGA-69-7974-01 1 201844005 201844005 A T IPO9 Missense_Mutation p.E960V 0.37 tolerated(0.26) benign(0.003) TCGA-69-7974-01 1 206772944 206772944 C A EIF2D Nonsense_Mutation p.E359* 0.22 TCGA-69-7974-01 1 215901512 215901512 T C USH2A Missense_Mutation p.T3976A 0.55 possibly_damaging(0.731) TCGA-69-7974-01 1 227216678 227216678 C A CDC42BPA Missense_Mutation p.R1336L 0.11 tolerated(0.19) benign(0.221) TCGA-69-7974-01 1 228494243 228494243 G A OBSCN Missense_Mutation p.A4901T 0.24 possibly_damaging(0.468) TCGA-69-7974-01 1 237893592 237893592 A G RYR2 Missense_Mutation p.Y3624C 0.47 probably_damaging(0.91) TCGA-69-7974-01 1 25611103 25611103 G C RHD Missense_Mutation p.G63A 0.11 tolerated(0.06) possibly_damaging(0.866) TCGA-69-7974-01 1 25633133 25633133 G C RHD Missense_Mutation p.G329A 0.32 deleterious(0) benign(0.014) TCGA-69-7974-01 1 27189667 27189667 C T SFN 5'UTR 0.06 TCGA-69-7974-01 1 33560255 33560255 G A ADC Missense_Mutation p.V232I 0.21 tolerated(0.34) benign(0.004) TCGA-69-7974-01 1 36212457 36212457 G C CLSPN Missense_Mutation p.Q922E 0.09 tolerated(0.1) possibly_damaging(0.77) TCGA-69-7974-01 1 36505906 36505906 A T AGO3 Splice_Site p.X680_splice 0.11 TCGA-69-7974-01 1 37337950 37337950 G T GRIK3 Missense_Mutation p.L191I 0.09 tolerated(0.1) probably_damaging(0.978) TCGA-69-7974-01 1 39763377 39763377 C - MACF1 Frame_Shift_Del p.S820Afs*39 0.15 TCGA-69-7974-01 1 4772063 4772063 G T AJAP1 Missense_Mutation p.G45C 0.13 deleterious(0.01) possibly_damaging(0.701) TCGA-69-7974-01 1 6528596 6528596 C A PLEKHG5 Missense_Mutation p.G846V 0.23 deleterious(0.03) possibly_damaging(0.644) TCGA-69-7974-01 1 70300462 70300462 G T LRRC7 Splice_Site p.X129_splice 0.28 TCGA-69-7974-01 1 70505424 70505424 C A LRRC7 Missense_Mutation p.A1268E 0.11 tolerated(0.07) possibly_damaging(0.894) TCGA-69-7974-01 1 75037744 75037744 G T C1orf173 Missense_Mutation p.A1217E 0.10 tolerated(0.25) benign(0.003) TCGA-69-7974-01 1 84878181 84878181 C A DNASE2B Missense_Mutation p.Q233K 0.24 tolerated(0.21) benign(0.021) TCGA-69-7974-01 1 85124142 85124142 C T SSX2IP Missense_Mutation p.D313N 0.22 deleterious(0.01) probably_damaging(0.98) TCGA-69-7974-01 1 85405267 85405267 C A MCOLN2 Missense_Mutation p.G360V 0.15 deleterious(0) probably_damaging(1) TCGA-69-7974-01 1 86934668 86934668 A T CLCA1 Missense_Mutation p.K5M 0.14 deleterious(0.01) probably_damaging(0.984) TCGA-69-7974-01 1 89448627 89448627 G A RBMXL1 Missense_Mutation p.P295S 0.21 tolerated(0.06) benign(0.206) TCGA-69-7974-01 1 99753678 99753678 G T LPPR4 Missense_Mutation p.S127I 0.10 deleterious(0) possibly_damaging(0.807) TCGA-69-7974-01 20 20246074 20246074 C A C20orf26 Intron 0.10 TCGA-69-7974-01 20 25459559 25459559 C A NINL Missense_Mutation p.R734M 0.27 deleterious(0) probably_damaging(0.999) TCGA-69-7974-01 20 36842064 36842064 G C KIAA1755 Missense_Mutation p.Q995E 0.26 tolerated(0.09) benign(0.016) TCGA-69-7974-01 20 43538805 43538805 C T PABPC1L Silent p.G7G 0.36 TCGA-69-7974-01 20 48257133 48257133 C A B4GALT5 Missense_Mutation p.D226Y 0.38 tolerated(0.06) benign(0.396) TCGA-69-7974-01 20 58441592 58441592 T A SYCP2 Missense_Mutation p.Q1393L 0.42 deleterious(0.01) possibly_damaging(0.466) TCGA-69-7974-01 20 62372655 62372655 T C SLC2A4RG Intron 0.14 TCGA-69-7974-01 21 11039050 11039050 C A BAGE2 RNA 0.04 TCGA-69-7974-01 21 11049598 11049598 C A BAGE2 RNA 0.04 TCGA-69-7974-01 21 19715876 19715876 C T TMPRSS15 Missense_Mutation p.G459R 0.16 deleterious(0) probably_damaging(1) TCGA-69-7974-01 21 31812738 31812738 C T KRTAP15-1 Silent p.P31P 0.14 TCGA-69-7974-01 21 32253806 32253806 C A KRTAP11-1 Missense_Mutation p.R13M 0.27 deleterious(0.01) probably_damaging(0.973) TCGA-69-7974-01 21 32639019 32639019 C A TIAM1 Missense_Mutation p.W90C 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-69-7974-01 21 45563123 45563123 G C C21orf33 Silent p.V186V 0.12 TCGA-69-7974-01 21 45563124 45563124 C T C21orf33 Missense_Mutation p.L187F 0.12 tolerated(0.46) probably_damaging(0.939) TCGA-69-7974-01 21 46057937 46057937 C G KRTAP10-10 Silent p.T201T 0.10 TCGA-69-7974-01 22 20109804 20109804 G A RANBP1 Missense_Mutation p.R57Q 0.09 deleterious(0) possibly_damaging(0.856) TCGA-69-7974-01 22 22869461 22869461 G C ZNF280A Nonsense_Mutation p.S165* 0.26 TCGA-69-7974-01 22 23135302 23135302 C T IGLV2-11 Missense_Mutation p.S55F 0.09 deleterious_low_confidence(0.01) benign(0.312) TCGA-69-7974-01 22 32480562 32480562 A G SLC5A1 Silent p.R267R 0.34 TCGA-69-7974-01 22 32875128 32875128 C T FBXO7 Missense_Mutation p.H95Y 0.13 tolerated(0.13) benign(0.009) TCGA-69-7974-01 22 38369659 38369659 G T SOX10 Nonsense_Mutation p.S415* 0.27 TCGA-69-7974-01 22 39123339 39123339 G T GTPBP1 Missense_Mutation p.R508L 0.50 deleterious(0.02) possibly_damaging(0.869) TCGA-69-7974-01 22 39883366 39883366 G A MGAT3 Missense_Mutation p.R5H 0.42 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-69-7974-01 22 40708543 40708543 A C TNRC6B Missense_Mutation p.Q1490H 0.27 tolerated(0.08) possibly_damaging(0.702) TCGA-69-7974-01 22 41564797 41564799 TGA GATGGTGTTGACCTG EP300 In_Frame_Ins p.I1366_D1367delinsMMVLTC 0.15 TCGA-69-7974-01 2 107423204 107423204 C - ST6GAL2 Frame_Shift_Del p.G507Afs*34 0.27 TCGA-69-7974-01 2 127944892 127944892 C T CYP27C1 Silent p.L358L 0.40 TCGA-69-7974-01 2 130900785 130900785 G A CCDC74B Intron 0.12 TCGA-69-7974-01 2 140992411 140992411 G T LRP1B Missense_Mutation p.H4535N 0.31 benign(0.001) TCGA-69-7974-01 2 143718272 143718272 G T KYNU Missense_Mutation p.S221I 0.11 deleterious(0.01) probably_damaging(0.937) TCGA-69-7974-01 2 143742717 143742717 G A KYNU Nonsense_Mutation p.W265* 0.34 TCGA-69-7974-01 2 145156879 145156879 G T ZEB2 Silent p.A625A 0.36 TCGA-69-7974-01 2 148712948 148712948 T A ORC4 Missense_Mutation p.N135I 0.11 deleterious(0) probably_damaging(0.936) TCGA-69-7974-01 2 167289148 167289148 C G SCN7A Missense_Mutation p.G758R 0.23 deleterious(0.02) benign(0.076) TCGA-69-7974-01 2 16742505 16742505 C A FAM49A Missense_Mutation p.R185L 0.12 deleterious(0.01) probably_damaging(0.921) TCGA-69-7974-01 2 169791858 169791858 C G ABCB11 Missense_Mutation p.E964D 0.13 tolerated(0.2) benign(0.11) TCGA-69-7974-01 2 174943777 174943777 T G OLA1 Silent p.T336T 0.33 TCGA-69-7974-01 2 176982052 176982052 A C HOXD10 Missense_Mutation p.Q164P 0.13 tolerated(0.35) benign(0.006) TCGA-69-7974-01 2 179462483 179462484 - C TTN Frame_Shift_Ins p.V19109Gfs*22 0.10 TCGA-69-7974-01 2 179598397 179598397 C A TTN Missense_Mutation p.C5240F 0.33 TCGA-69-7974-01 2 179622517 179622517 T C TTN Missense_Mutation p.H3477R 0.11 TCGA-69-7974-01 2 182400330 182400330 G A ITGA4 3'UTR 0.40 TCGA-69-7974-01 2 185803130 185803130 C A ZNF804A Missense_Mutation p.P1003T 0.11 deleterious(0) probably_damaging(0.992) TCGA-69-7974-01 2 189907500 189907500 C A COL5A2 Splice_Site p.X1158_splice 0.38 TCGA-69-7974-01 2 192863878 192863878 T A TMEFF2 Missense_Mutation p.D198V 0.21 deleterious(0) probably_damaging(0.955) TCGA-69-7974-01 2 192863880 192863880 A T TMEFF2 Silent p.S197S 0.23 TCGA-69-7974-01 2 197863714 197863714 T G ANKRD44 Missense_Mutation p.H836P 0.10 deleterious(0) probably_damaging(0.999) TCGA-69-7974-01 2 197870629 197870629 C A ANKRD44 Missense_Mutation p.M687I 0.40 tolerated(0.21) benign(0.003) TCGA-69-7974-01 2 204058616 204058616 C G NBEAL1 Silent p.L2311L 0.06 TCGA-69-7974-01 2 207422186 207422186 C A ADAM23 Missense_Mutation p.N323K 0.05 tolerated(0.34) benign(0.236) TCGA-69-7974-01 2 210574870 210574870 G C MAP2 Silent p.A1655A 0.12 TCGA-69-7974-01 2 212589920 212589920 C A ERBB4 Splice_Site p.X208_splice 0.31 TCGA-69-7974-01 2 216930034 216930034 C A PECR Splice_Site p.X142_splice 0.11 TCGA-69-7974-01 2 217142526 217142526 G T MARCH4 Missense_Mutation p.S245Y 0.27 deleterious(0.05) benign(0.305) TCGA-69-7974-01 2 223795453 223795453 A C ACSL3 Missense_Mutation p.E552A 0.36 tolerated(0.55) benign(0.02) TCGA-69-7974-01 2 223917596 223917596 C A KCNE4 Silent p.A16A 0.19 TCGA-69-7974-01 2 225781421 225781421 C T DOCK10 Silent p.L108L 0.21 TCGA-69-7974-01 2 227660323 227660323 C A IRS1 Silent p.P1044P 0.28 TCGA-69-7974-01 2 232389994 232389994 C T NMUR1 Silent p.L347L 0.32 TCGA-69-7974-01 2 233785021 233785021 T C NGEF Silent p.L267L 0.16 TCGA-69-7974-01 2 241656766 241656766 C A KIF1A 3'UTR 0.30 TCGA-69-7974-01 2 24929734 24929734 T A NCOA1 Missense_Mutation p.S465R 0.26 deleterious(0) benign(0.136) TCGA-69-7974-01 2 26951265 26951265 G T KCNK3 Silent p.T338T 0.40 TCGA-69-7974-01 2 27301993 27301993 G T EMILIN1 Silent p.G20G 0.40 TCGA-69-7974-01 2 27800825 27800825 G T C2orf16 Silent p.G462G 0.19 TCGA-69-7974-01 2 27839193 27839193 T C ZNF512 Splice_Site p.X432_splice 0.07 TCGA-69-7974-01 2 40656903 40656903 C T SLC8A1 Missense_Mutation p.G173E 0.11 deleterious(0) probably_damaging(1) TCGA-69-7974-01 2 43019611 43019611 G T HAAO Silent p.V22V 0.08 TCGA-69-7974-01 2 45233317 45233317 C A SIX2 Missense_Mutation p.G290C 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-69-7974-01 2 47300960 47300960 C A TTC7A Silent p.A825A 0.32 TCGA-69-7974-01 2 48573477 48573477 C G FOXN2 Missense_Mutation p.P42A 0.24 deleterious(0.01) benign(0.235) TCGA-69-7974-01 2 48873884 48873884 C T STON1-GTF2A1L Silent p.I931I 0.05 TCGA-69-7974-01 2 71148413 71148413 C T VAX2 Nonsense_Mutation p.Q145* 0.07 TCGA-69-7974-01 2 74752246 74752246 T A DQX1 Silent p.A107A 0.37 TCGA-69-7974-01 2 80096941 80096941 G A CTNNA2 Splice_Site p.X156_splice 0.07 TCGA-69-7974-01 2 96943564 96943564 G A SNRNP200 Missense_Mutation p.T1912M 0.34 deleterious(0.01) probably_damaging(0.991) TCGA-69-7974-01 2 97370250 97370250 C T LMAN2L 3'Flank 0.10 TCGA-69-7974-01 2 97911222 97911222 G T ANKRD36 Missense_Mutation p.R1633I 0.19 deleterious(0) benign(0.405) TCGA-69-7974-01 3 13432718 13432718 C T NUP210 Missense_Mutation p.A176T 0.21 tolerated(1) benign(0.027) TCGA-69-7974-01 3 134851762 134851762 C A EPHB1 Missense_Mutation p.R390S 0.26 tolerated(0.43) benign(0.101) TCGA-69-7974-01 3 1363501 1363501 G C CNTN6 Missense_Mutation p.G310A 0.18 deleterious(0.02) probably_damaging(1) TCGA-69-7974-01 3 13679066 13679066 T A FBLN2 Missense_Mutation p.C1115S 0.21 deleterious(0) probably_damaging(0.999) TCGA-69-7974-01 3 146318159 146318159 G T PLSCR5 Missense_Mutation p.N35K 0.16 tolerated(0.88) benign(0.001) TCGA-69-7974-01 3 150690389 150690389 G T CLRN1 Missense_Mutation p.A36D 0.23 deleterious(0) possibly_damaging(0.697) TCGA-69-7974-01 3 150908657 150908657 G A MED12L Missense_Mutation p.R636Q 0.15 tolerated(0.58) probably_damaging(0.996) TCGA-69-7974-01 3 17056272 17056272 G A PLCL2 Missense_Mutation p.V837M 0.20 tolerated(0.1) benign(0.011) TCGA-69-7974-01 3 170612100 170612100 T A EIF5A2 Missense_Mutation p.N128I 0.28 deleterious(0.01) benign(0.144) TCGA-69-7974-01 3 184103942 184103942 G A CHRD Missense_Mutation p.G643R 0.22 deleterious(0) probably_damaging(0.995) TCGA-69-7974-01 3 19575439 19575439 G T KCNH8 Nonsense_Mutation p.G1058* 0.29 TCGA-69-7974-01 3 29628605 29628605 G T RBMS3 Missense_Mutation p.G103V 0.30 deleterious(0.03) probably_damaging(1) TCGA-69-7974-01 3 361475 361475 C A CHL1 Missense_Mutation p.L6I 0.20 tolerated_low_confidence(0.41) benign(0.038) TCGA-69-7974-01 3 42955892 42955892 G T ZNF662 Missense_Mutation p.M135I 0.39 tolerated(0.46) benign(0.011) TCGA-69-7974-01 3 47868845 47868845 G T DHX30 Missense_Mutation p.D45Y 0.26 deleterious(0.01) probably_damaging(0.929) TCGA-69-7974-01 3 49933714 49933714 G A MST1R Missense_Mutation p.P855S 0.21 tolerated(0.22) benign(0.031) TCGA-69-7974-01 3 53157784 53157785 - C RFT1 Frame_Shift_Ins p.T75Hfs*35 0.21 TCGA-69-7974-01 3 64601678 64601678 C A ADAMTS9 Silent p.G994G 0.21 TCGA-69-7974-01 3 7340476 7340476 G T GRM7 Missense_Mutation p.R281M 0.21 deleterious(0) probably_damaging(0.998) TCGA-69-7974-01 3 7340477 7340477 G T GRM7 Missense_Mutation p.R281S 0.21 deleterious(0) probably_damaging(0.994) TCGA-69-7974-01 3 73433914 73433914 C T PDZRN3 Silent p.A601A 0.13 TCGA-69-7974-01 3 7348300 7348300 G C GRM7 Missense_Mutation p.G332R 0.16 deleterious(0) probably_damaging(1) TCGA-69-7974-01 3 7348301 7348301 G T GRM7 Missense_Mutation p.G332V 0.16 deleterious(0) probably_damaging(1) TCGA-69-7974-01 3 77684089 77684089 G C ROBO2 Missense_Mutation p.A1293P 0.23 tolerated(0.14) benign(0.006) TCGA-69-7974-01 3 89259220 89259220 C A EPHA3 Missense_Mutation p.L122M 0.22 tolerated(0.07) probably_damaging(0.997) TCGA-69-7974-01 3 98188603 98188603 C G OR5K1 Missense_Mutation p.I61M 0.27 deleterious(0.03) benign(0.017) TCGA-69-7974-01 4 100268982 100268982 C A ADH1C Missense_Mutation p.V14L 0.08 benign(0.044) TCGA-69-7974-01 4 103505875 103505875 A G NFKB1 Missense_Mutation p.I322V 0.17 tolerated(1) benign(0) TCGA-69-7974-01 4 113567579 113567579 G T LARP7 Missense_Mutation p.R99I 0.25 deleterious(0) possibly_damaging(0.905) TCGA-69-7974-01 4 122605858 122605858 C A ANXA5 Missense_Mutation p.A55S 0.24 tolerated(0.64) benign(0.004) TCGA-69-7974-01 4 126373905 126373905 G T FAT4 Missense_Mutation p.G3912C 0.08 probably_damaging(0.984) TCGA-69-7974-01 4 126389820 126389820 A G FAT4 Missense_Mutation p.Q4018R 0.12 benign(0) TCGA-69-7974-01 4 126411345 126411345 G T FAT4 Silent p.S4456S 0.05 TCGA-69-7974-01 4 134072784 134072784 C A PCDH10 Missense_Mutation p.Q497K 0.12 tolerated(0.72) benign(0.001) TCGA-69-7974-01 4 144141531 144141531 C T USP38 Silent p.N1017N 0.13 TCGA-69-7974-01 4 154542990 154542990 A G KIAA0922 Missense_Mutation p.Q1283R 0.31 tolerated(0.2) benign(0.012) TCGA-69-7974-01 4 169215041 169215041 C A DDX60 Missense_Mutation p.R260L 0.23 deleterious(0.01) possibly_damaging(0.857) TCGA-69-7974-01 4 27024376 27024376 G T STIM2 Missense_Mutation p.A675S 0.12 tolerated_low_confidence(0.16) benign(0.183) TCGA-69-7974-01 4 2943931 2943931 G C NOP14 Missense_Mutation p.A680G 0.19 tolerated(0.32) benign(0.395) TCGA-69-7974-01 4 44176871 44176871 G T KCTD8 Missense_Mutation p.P453Q 0.23 deleterious(0) probably_damaging(0.994) TCGA-69-7974-01 4 47808993 47808993 C A CORIN Silent p.R45R 0.23 TCGA-69-7974-01 4 55152085 55152085 G T PDGFRA Silent p.L839L 0.17 TCGA-69-7974-01 4 56225571 56225571 C T SRD5A3 Missense_Mutation p.L94F 0.13 tolerated(0.06) possibly_damaging(0.861) TCGA-69-7974-01 4 66270111 66270111 C A EPHA5 Missense_Mutation p.G591C 0.23 tolerated(0.18) probably_damaging(0.999) TCGA-69-7974-01 4 71201760 71201760 A T CABS1 Missense_Mutation p.E335V 0.20 deleterious(0.01) benign(0.024) TCGA-69-7974-01 4 72994591 72994591 G T NPFFR2 Missense_Mutation p.G197C 0.13 deleterious(0) probably_damaging(1) TCGA-69-7974-01 4 73944596 73944596 G T ANKRD17 Missense_Mutation p.Q2391K 0.18 benign(0.024) TCGA-69-7974-01 4 77025108 77025108 C A ART3 Missense_Mutation p.P319H 0.07 deleterious_low_confidence(0) possibly_damaging(0.789) TCGA-69-7974-01 4 77025109 77025109 C A ART3 Silent p.P319P 0.07 TCGA-69-7974-01 4 84205934 84205934 G A COQ2 Missense_Mutation p.P45L 0.14 deleterious_low_confidence(0.01) benign(0.025) TCGA-69-7974-01 4 84347187 84347187 C T HELQ Missense_Mutation p.S912N 0.04 tolerated(0.16) benign(0.001) TCGA-69-7974-01 4 8605768 8605768 C A CPZ Missense_Mutation p.H188N 0.22 deleterious(0.03) benign(0.189) TCGA-69-7974-01 4 86985475 86985475 C T MAPK10 Missense_Mutation p.D352N 0.16 deleterious(0.01) benign(0.068) TCGA-69-7974-01 4 89591020 89591020 G C HERC3 Missense_Mutation p.W548S 0.20 deleterious(0) probably_damaging(0.997) TCGA-69-7974-01 4 96137341 96137341 G A UNC5C Missense_Mutation p.A556V 0.11 tolerated(0.11) benign(0.155) TCGA-69-7974-01 5 10261748 10261748 G T CCT5 Missense_Mutation p.G357V 0.08 deleterious(0) probably_damaging(1) TCGA-69-7974-01 5 1244466 1244466 G A SLC6A18 Missense_Mutation p.V492I 0.07 tolerated(0.37) benign(0.01) TCGA-69-7974-01 5 128862050 128862050 A T ADAMTS19 Missense_Mutation p.Q323H 0.28 tolerated(0.07) benign(0.029) TCGA-69-7974-01 5 137426298 137426298 C G WNT8A Missense_Mutation p.L198V 0.13 tolerated(0.05) probably_damaging(0.999) TCGA-69-7974-01 5 140167630 140167630 G T PCDHA1 Silent p.V585V 0.09 TCGA-69-7974-01 5 140174862 140174862 C A PCDHA2 Missense_Mutation p.H105N 0.14 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-69-7974-01 5 140590557 140590557 C G PCDHB12 Missense_Mutation p.A693G 0.10 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-69-7974-01 5 140615555 140615555 G T PCDHB18 RNA 0.17 TCGA-69-7974-01 5 140615647 140615647 C A PCDHB18 RNA 0.11 TCGA-69-7974-01 5 1406400 1406400 A G SLC6A3 Missense_Mutation p.V501A 0.08 deleterious(0.03) benign(0.201) TCGA-69-7974-01 5 140725383 140725383 G C PCDHGA3 Missense_Mutation p.D595H 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-69-7974-01 5 140730188 140730188 C G PCDHGB1 Missense_Mutation p.Q121E 0.23 tolerated(0.69) benign(0.047) TCGA-69-7974-01 5 140741775 140741775 C A PCDHGB2 Nonsense_Mutation p.Y691* 0.32 TCGA-69-7974-01 5 150111016 150111016 T A DCTN4 Silent p.P198P 0.17 TCGA-69-7974-01 5 150947771 150947771 G T FAT2 Missense_Mutation p.A241E 0.30 benign(0.155) TCGA-69-7974-01 5 16465192 16465192 C A ZNF622 Nonsense_Mutation p.E195* 0.14 TCGA-69-7974-01 5 169141438 169141438 G T DOCK2 Missense_Mutation p.V640L 0.14 deleterious(0) benign(0.391) TCGA-69-7974-01 5 169675786 169675786 C A LCP2 Missense_Mutation p.R506M 0.21 deleterious(0.01) possibly_damaging(0.779) TCGA-69-7974-01 5 176078790 176078790 G T TSPAN17 Silent p.L58L 0.23 TCGA-69-7974-01 5 178410105 178410105 C T GRM6 Missense_Mutation p.D748N 0.14 tolerated(0.06) possibly_damaging(0.491) TCGA-69-7974-01 5 180048108 180048108 G T FLT4 Missense_Mutation p.S722Y 0.11 deleterious(0) probably_damaging(0.98) TCGA-69-7974-01 5 1879631 1879631 G A IRX4 Silent p.S241S 0.15 TCGA-69-7974-01 5 21751790 21751791 - A CDH12 3'UTR 0.35 TCGA-69-7974-01 5 21760733 21760733 G T CDH12 Missense_Mutation p.Q523K 0.46 tolerated(0.42) benign(0.003) TCGA-69-7974-01 5 22142545 22142545 G T CDH12 Intron 0.40 TCGA-69-7974-01 5 37169085 37169085 C A C5orf42 Silent p.G2347G 0.20 TCGA-69-7974-01 5 70952781 70952781 C T MCCC2 3'UTR 0.50 TCGA-69-7974-01 5 76171232 76171232 C A S100Z Missense_Mutation p.F16L 0.14 deleterious(0) probably_damaging(1) TCGA-69-7974-01 6 133065622 133065622 T A VNN2 Missense_Mutation p.K460N 0.27 tolerated(0.69) benign(0.008) TCGA-69-7974-01 6 152771778 152771778 C A SYNE1 Missense_Mutation p.W1126L 0.24 probably_damaging(0.998) TCGA-69-7974-01 6 155635464 155635464 T C TFB1M Silent p.L33L 0.20 TCGA-69-7974-01 6 159653941 159653941 G T FNDC1 Missense_Mutation p.R799S 0.41 deleterious_low_confidence(0) unknown(0) TCGA-69-7974-01 6 160962169 160962169 C T LPA Nonsense_Mutation p.W1855* 0.24 TCGA-69-7974-01 6 168312131 168312131 G A MLLT4 Missense_Mutation p.V667I 0.05 tolerated(0.15) benign(0.048) TCGA-69-7974-01 6 170068147 170068147 C A WDR27 Silent p.V197V 0.37 TCGA-69-7974-01 6 25819293 25819293 C A SLC17A1 Intron 0.19 TCGA-69-7974-01 6 28333385 28333385 C A ZKSCAN3 Missense_Mutation p.H314N 0.25 deleterious(0) possibly_damaging(0.904) TCGA-69-7974-01 6 28333386 28333386 A C ZKSCAN3 Missense_Mutation p.H314P 0.25 deleterious(0) probably_damaging(0.934) TCGA-69-7974-01 6 2890474 2890474 C T SERPINB9 Missense_Mutation p.D352N 0.25 tolerated(0.08) probably_damaging(1) TCGA-69-7974-01 6 29407861 29407861 G A OR10C1 Silent p.Q23Q 0.20 TCGA-69-7974-01 6 29407862 29407862 G T OR10C1 Missense_Mutation p.G24C 0.21 tolerated(0.18) benign(0.161) TCGA-69-7974-01 6 29408673 29408673 C A OR10C1 Missense_Mutation p.T294K 0.21 tolerated(1) benign(0.001) TCGA-69-7974-01 6 34741450 34741450 G C SNRPC 3'UTR 0.50 TCGA-69-7974-01 6 46672318 46672318 T C PLA2G7 Silent p.S435S 0.19 TCGA-69-7974-01 6 47749820 47749820 T A OPN5 Silent p.T6T 0.28 TCGA-69-7974-01 6 54806078 54806078 A G FAM83B Missense_Mutation p.K770R 0.10 deleterious(0.01) probably_damaging(0.974) TCGA-69-7974-01 6 56346870 56346870 C A DST Missense_Mutation p.R4547L 0.16 benign(0.132) TCGA-69-7974-01 6 6222322 6222322 G T F13A1 Missense_Mutation p.D352E 0.22 deleterious(0) probably_damaging(0.997) TCGA-69-7974-01 6 6318830 6318830 G A F13A1 Missense_Mutation p.A23V 0.11 tolerated(0.15) benign(0.122) TCGA-69-7974-01 6 73108696 73108696 G A RIMS1 Missense_Mutation p.C1587Y 0.16 tolerated(0.19) probably_damaging(0.993) TCGA-69-7974-01 6 76751681 76751681 C A IMPG1 Missense_Mutation p.G77V 0.29 deleterious(0.03) benign(0.444) TCGA-69-7974-01 6 84904721 84904721 A T KIAA1009 Nonsense_Mutation p.L303* 0.23 TCGA-69-7974-01 6 90604527 90604527 C T GJA10 Missense_Mutation p.L114F 0.45 deleterious(0.04) benign(0.417) TCGA-69-7974-01 6 97247421 97247421 T A GPR63 Missense_Mutation p.S63C 0.26 deleterious(0.01) benign(0.345) TCGA-69-7974-01 7 100685424 100685424 C T MUC17 Missense_Mutation p.S3576F 0.12 benign(0.04) TCGA-69-7974-01 7 107602048 107602048 C G LAMB1 Missense_Mutation p.G644A 0.10 tolerated(0.09) benign(0.033) TCGA-69-7974-01 7 120965499 120965499 C A WNT16 5'Flank 0.11 TCGA-69-7974-01 7 123593878 123593879 GG T SPAM1 Frame_Shift_Del p.G85Vfs*18 0.12 TCGA-69-7974-01 7 136700299 136700299 C A CHRM2 Missense_Mutation p.D229E 0.31 tolerated(1) benign(0.008) TCGA-69-7974-01 7 137282607 137282607 C A DGKI Missense_Mutation p.G433C 0.37 deleterious(0) probably_damaging(0.993) TCGA-69-7974-01 7 142099565 142099565 C A TRBV7-8 Silent p.L79L 0.31 TCGA-69-7974-01 7 142206690 142206690 T A TRBV10-2 Silent p.R55R 0.12 TCGA-69-7974-01 7 142239553 142239553 G A TRBV9 Silent p.F109F 0.10 TCGA-69-7974-01 7 142239729 142239729 C T TRBV9 Missense_Mutation p.V51M 0.29 deleterious(0.01) possibly_damaging(0.812) TCGA-69-7974-01 7 143053998 143053998 G A FAM131B Missense_Mutation p.P243L 0.08 deleterious(0.04) probably_damaging(1) TCGA-69-7974-01 7 146825825 146825825 C A CNTNAP2 Missense_Mutation p.S327Y 0.31 deleterious(0.03) possibly_damaging(0.903) TCGA-69-7974-01 7 150554515 150554515 C G AOC1 Nonsense_Mutation p.Y319* 0.42 TCGA-69-7974-01 7 150721495 150721495 C A ATG9B Missense_Mutation p.G6C 0.33 deleterious_low_confidence(0) unknown(0) TCGA-69-7974-01 7 2946267 2946267 C A CARD11 3'UTR 0.23 TCGA-69-7974-01 7 31691640 31691640 G T CCDC129 Missense_Mutation p.Q959H 0.39 tolerated(0.08) benign(0.393) TCGA-69-7974-01 7 4247759 4247759 A T SDK1 Missense_Mutation p.N1748I 0.16 deleterious(0) probably_damaging(0.962) TCGA-69-7974-01 7 44152310 44152310 G A AEBP1 Missense_Mutation p.A791T 0.08 tolerated(0.06) possibly_damaging(0.764) TCGA-69-7974-01 7 63726795 63726795 C A ZNF679 Missense_Mutation p.H262N 0.33 deleterious(0) probably_damaging(0.997) TCGA-69-7974-01 7 70254798 70254798 C G AUTS2 Missense_Mutation p.L866V 0.08 tolerated(0.07) benign(0.384) TCGA-69-7974-01 7 72658002 72658002 C T GTF2IRD2P1 RNA 0.14 TCGA-69-7974-01 7 83032006 83032006 C A SEMA3E Missense_Mutation p.G362V 0.37 deleterious(0) probably_damaging(0.986) TCGA-69-7974-01 7 83032093 83032093 C T SEMA3E Splice_Site p.X333_splice 0.28 TCGA-69-7974-01 7 92938167 92938167 A T CCDC132 Missense_Mutation p.Y554F 0.14 tolerated(0.11) benign(0.001) TCGA-69-7974-01 7 99621063 99621063 T G ZKSCAN1 5'UTR 0.36 TCGA-69-7974-01 8 10464760 10464760 G T RP1L1 Missense_Mutation p.P2283Q 0.36 unknown(0) TCGA-69-7974-01 8 10465391 10465391 C T RP1L1 Missense_Mutation p.E2073K 0.30 unknown(0) TCGA-69-7974-01 8 10468137 10468137 C T RP1L1 Silent p.L1157L 0.36 TCGA-69-7974-01 8 104948817 104948817 C T RIMS2 Missense_Mutation p.T805I 0.11 tolerated_low_confidence(0.11) possibly_damaging(0.769) TCGA-69-7974-01 8 10583327 10583327 G A SOX7 Missense_Mutation p.T415M 0.12 tolerated(0.15) benign(0.446) TCGA-69-7974-01 8 113241006 113241006 C A CSMD3 Missense_Mutation p.G3648V 0.06 tolerated(0.77) probably_damaging(0.964) TCGA-69-7974-01 8 113349771 113349771 C A CSMD3 Splice_Site p.X2281_splice 0.05 TCGA-69-7974-01 8 113353811 113353811 C A CSMD3 Missense_Mutation p.G2183C 0.09 deleterious(0) probably_damaging(0.996) TCGA-69-7974-01 8 116617184 116617184 C G TRPS1 Missense_Mutation p.D338H 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-69-7974-01 8 121160097 121160097 C A COL14A1 Missense_Mutation p.R6S 0.17 tolerated_low_confidence(0.39) benign(0.005) TCGA-69-7974-01 8 121180457 121180457 G T COL14A1 Missense_Mutation p.G136V 0.09 tolerated(0.11) benign(0.003) TCGA-69-7974-01 8 121222024 121222024 C A COL14A1 Missense_Mutation p.L451M 0.35 deleterious(0.01) possibly_damaging(0.781) TCGA-69-7974-01 8 124267901 124267901 C A ZHX1 Missense_Mutation p.V96L 0.36 deleterious(0.01) benign(0.028) TCGA-69-7974-01 8 141034058 141034058 C A TRAPPC9 Missense_Mutation p.R990L 0.10 tolerated(0.05) probably_damaging(0.979) TCGA-69-7974-01 8 144943141 144943141 G T EPPK1 Silent p.T1427T 0.10 TCGA-69-7974-01 8 26218501 26218502 - A PPP2R2A Frame_Shift_Ins p.R168Kfs*8 0.09 TCGA-69-7974-01 8 30537159 30537159 C A GSR Missense_Mutation p.G483W 0.29 deleterious(0) probably_damaging(1) TCGA-69-7974-01 8 36766951 36766951 T A KCNU1 Nonsense_Mutation p.Y743* 0.09 TCGA-69-7974-01 8 51617212 51617212 C A SNTG1 Missense_Mutation p.S364Y 0.10 tolerated(0.98) benign(0.007) TCGA-69-7974-01 8 52322094 52322094 G T PXDNL Missense_Mutation p.P697Q 0.14 deleterious(0) possibly_damaging(0.89) TCGA-69-7974-01 8 52322095 52322095 G T PXDNL Missense_Mutation p.P697T 0.14 deleterious(0.01) benign(0.266) TCGA-69-7974-01 8 53045624 53045624 C A ST18 Nonsense_Mutation p.E813* 0.26 TCGA-69-7974-01 8 54791991 54791991 C G RGS20 Silent p.A113A 0.22 TCGA-69-7974-01 8 63927937 63927937 T A GGH Missense_Mutation p.Y304F 0.28 tolerated(0.18) benign(0.143) TCGA-69-7974-01 8 72964945 72964945 A G TRPA1 Missense_Mutation p.L567P 0.29 deleterious(0) probably_damaging(0.992) TCGA-69-7974-01 8 97172696 97172696 G T GDF6 Silent p.P75P 0.27 TCGA-69-7974-01 9 104499707 104499707 G C GRIN3A Missense_Mutation p.C185W 0.10 deleterious(0) probably_damaging(0.999) TCGA-69-7974-01 9 111662599 111662599 C A IKBKAP Missense_Mutation p.V691L 0.23 tolerated(0.07) probably_damaging(0.98) TCGA-69-7974-01 9 116930612 116930612 C T COL27A1 Silent p.T259T 0.23 TCGA-69-7974-01 9 117124156 117124156 C A AKNA Missense_Mutation p.C651F 0.12 deleterious(0.02) possibly_damaging(0.558) TCGA-69-7974-01 9 120475148 120475148 C A TLR4 Missense_Mutation p.Q248K 0.12 tolerated(0.18) benign(0.012) TCGA-69-7974-01 9 121929695 121929695 C G BRINP1 Missense_Mutation p.K651N 0.13 deleterious(0) probably_damaging(0.95) TCGA-69-7974-01 9 123900925 123900925 A T CNTRL Missense_Mutation p.S769C 0.14 possibly_damaging(0.571) TCGA-69-7974-01 9 124081122 124081141 GCACGGCATGGATGACGATG - GSN Frame_Shift_Del p.G438Rfs*48 0.15 TCGA-69-7974-01 9 125145944 125145944 G A PTGS1 Missense_Mutation p.E307K 0.11 deleterious(0) probably_damaging(1) TCGA-69-7974-01 9 125486959 125486959 T A OR1L4 Missense_Mutation p.S231T 0.06 deleterious(0.01) probably_damaging(0.966) TCGA-69-7974-01 9 125512817 125512817 T A OR1L6 Missense_Mutation p.S231T 0.21 deleterious(0.01) probably_damaging(0.966) TCGA-69-7974-01 9 130706925 130706925 C A FAM102A Missense_Mutation p.A360S 0.17 deleterious(0.01) benign(0.019) TCGA-69-7974-01 9 139927525 139927525 C T C9orf139 Missense_Mutation p.R4W 0.13 deleterious_low_confidence(0.01) benign(0.068) TCGA-69-7974-01 9 140062168 140062168 G A GRIN1 Intron 0.24 TCGA-69-7974-01 9 14722638 14722638 G T CER1 Silent p.L11L 0.17 TCGA-69-7974-01 9 16552724 16552724 G T BNC2 Missense_Mutation p.T158N 0.18 deleterious(0) possibly_damaging(0.747) TCGA-69-7974-01 9 16552726 16552726 G T BNC2 Silent p.P157P 0.18 TCGA-69-7974-01 9 17793473 17793473 C T SH3GL2 Silent p.H279H 0.08 TCGA-69-7974-01 9 33676258 33676258 G T PTENP1 RNA 0.22 TCGA-69-7974-01 9 35853849 35853849 G T TMEM8B 3'UTR 0.38 TCGA-69-7974-01 9 36170865 36170865 G T CCIN Missense_Mutation p.V456F 0.06 tolerated(0.06) probably_damaging(0.972) TCGA-69-7974-01 9 38016031 38016031 T C SHB Missense_Mutation p.Y272C 0.07 deleterious(0) probably_damaging(0.99) TCGA-69-7974-01 9 3829319 3829319 C A GLIS3 Missense_Mutation p.G883C 0.19 deleterious(0.01) probably_damaging(1) TCGA-69-7974-01 9 74842864 74842864 G C GDA Silent p.V276V 0.23 TCGA-69-7974-01 9 77354345 77354345 A T TRPM6 Silent p.A1836A 0.30 TCGA-69-7974-01 9 79325905 79325905 C T PRUNE2 Missense_Mutation p.G429R 0.16 deleterious(0) probably_damaging(1) TCGA-69-7974-01 X 100509550 100509550 C A DRP2 Missense_Mutation p.T705K 0.18 deleterious(0) possibly_damaging(0.689) TCGA-69-7974-01 X 102004018 102004018 G T BHLHB9 Missense_Mutation p.G32V 0.18 deleterious(0.01) benign(0.157) TCGA-69-7974-01 X 108780244 108780244 G C NXT2 Silent p.T58T 0.39 TCGA-69-7974-01 X 110489915 110489915 G C CAPN6 Missense_Mutation p.R606G 0.27 tolerated(0.23) benign(0.019) TCGA-69-7974-01 X 110980035 110980035 A T ALG13 Missense_Mutation p.S875C 0.10 tolerated(0.19) benign(0.41) TCGA-69-7974-01 X 11157575 11157575 G T ARHGAP6 Missense_Mutation p.P778Q 0.14 tolerated_low_confidence(0.59) benign(0.004) TCGA-69-7974-01 X 117079468 117079468 G T KLHL13 Missense_Mutation p.H60N 0.16 tolerated(0.09) probably_damaging(0.974) TCGA-69-7974-01 X 117960349 117960349 C T ZCCHC12 Missense_Mutation p.T381I 0.07 deleterious_low_confidence(0.03) possibly_damaging(0.905) TCGA-69-7974-01 X 118797602 118797602 G A SEPT6 Silent p.L62L 0.11 TCGA-69-7974-01 X 125685398 125685398 T A DCAF12L1 Silent p.A398A 0.17 TCGA-69-7974-01 X 12734515 12734515 C A FRMPD4 Missense_Mutation p.P646Q 0.12 deleterious_low_confidence(0.05) probably_damaging(0.98) TCGA-69-7974-01 X 128599910 128599910 G T SMARCA1 Missense_Mutation p.Q910K 0.28 tolerated(0.22) benign(0.289) TCGA-69-7974-01 X 128640126 128640126 C T SMARCA1 Silent p.L343L 0.27 TCGA-69-7974-01 X 129149884 129149884 C A BCORL1 Missense_Mutation p.L1046M 0.40 probably_damaging(0.999) TCGA-69-7974-01 X 129271160 129271160 G T AIFM1 Missense_Mutation p.A323D 0.24 tolerated(0.08) benign(0.013) TCGA-69-7974-01 X 130678891 130678891 C T OR13H1 Missense_Mutation p.P282S 0.18 deleterious(0) probably_damaging(0.981) TCGA-69-7974-01 X 132887746 132887746 G C GPC3 Missense_Mutation p.C265W 0.22 deleterious(0) probably_damaging(1) TCGA-69-7974-01 X 134990304 134990304 C T SAGE1 Missense_Mutation p.P406S 0.24 tolerated(0.06) probably_damaging(0.932) TCGA-69-7974-01 X 135081019 135081019 A G SLC9A6 Missense_Mutation p.I229V 0.24 tolerated(0.35) benign(0.007) TCGA-69-7974-01 X 135581828 135581828 C A HTATSF1 Silent p.T86T 0.29 TCGA-69-7974-01 X 135592994 135592994 G T HTATSF1 Nonsense_Mutation p.E364* 0.17 TCGA-69-7974-01 X 138698515 138698515 C A MCF2 Missense_Mutation p.A433S 0.23 tolerated(0.17) benign(0.125) TCGA-69-7974-01 X 142717818 142717818 C T SLITRK4 Missense_Mutation p.M369I 0.17 tolerated(1) benign(0.002) TCGA-69-7974-01 X 144904292 144904292 C G SLITRK2 Missense_Mutation p.L117V 0.11 deleterious(0) probably_damaging(0.999) TCGA-69-7974-01 X 14627160 14627160 G T GLRA2 Nonsense_Mutation p.G255* 0.08 TCGA-69-7974-01 X 150349877 150349877 G T GPR50 Missense_Mutation p.V608F 0.08 tolerated_low_confidence(0.06) benign(0.159) TCGA-69-7974-01 X 150572142 150572142 G C VMA21 Silent p.L31L 0.22 TCGA-69-7974-01 X 151123380 151123380 G T GABRE Silent p.R438R 0.21 TCGA-69-7974-01 X 152721063 152721063 A T HAUS7 Silent p.P299P 0.34 TCGA-69-7974-01 X 152914746 152914746 C T DUSP9 Missense_Mutation p.R145C 0.23 tolerated(0.09) benign(0) TCGA-69-7974-01 X 153033701 153033701 T C PLXNB3 Intron 0.21 TCGA-69-7974-01 X 153033745 153033745 C A PLXNB3 Silent p.P399P 0.09 TCGA-69-7974-01 X 153036515 153036515 C T PLXNB3 Silent p.L767L 0.26 TCGA-69-7974-01 X 153141351 153141351 G A L1CAM 5'UTR 0.28 TCGA-69-7974-01 X 153692504 153692504 C A PLXNA3 Missense_Mutation p.T559N 0.10 tolerated(0.45) benign(0.118) TCGA-69-7974-01 X 153694567 153694567 G T PLXNA3 Missense_Mutation p.C918F 0.26 deleterious(0) probably_damaging(0.999) TCGA-69-7974-01 X 153695405 153695405 G T PLXNA3 Missense_Mutation p.S1038I 0.32 deleterious(0) probably_damaging(0.999) TCGA-69-7974-01 X 153944568 153944568 G T GAB3 Missense_Mutation p.R37S 0.12 deleterious(0) possibly_damaging(0.799) TCGA-69-7974-01 X 154091475 154091475 C A F8 Missense_Mutation p.G2153W 0.26 deleterious(0) probably_damaging(1) TCGA-69-7974-01 X 154467205 154467205 T A VBP1 3'UTR 0.36 TCGA-69-7974-01 X 1585303 1585305 CGG TT P2RY8 Nonsense_Mutation p.C49* 0.44 TCGA-69-7974-01 X 22292446 22292446 C A ZNF645 3'UTR 0.24 TCGA-69-7974-01 X 23019473 23019473 G A DDX53 Silent p.L433L 0.35 TCGA-69-7974-01 X 23411992 23411992 G T PTCHD1 Missense_Mutation p.W786L 0.34 tolerated(0.15) probably_damaging(0.996) TCGA-69-7974-01 X 26212776 26212776 C A MAGEB6 Silent p.P271P 0.29 TCGA-69-7974-01 X 2936658 2936658 G C ARSH Missense_Mutation p.R283P 0.27 deleterious(0.01) possibly_damaging(0.657) TCGA-69-7974-01 X 30736712 30736712 A C GK Missense_Mutation p.I339L 0.36 tolerated(0.18) benign(0.046) TCGA-69-7974-01 X 32328357 32328357 C G DMD Missense_Mutation p.E1987Q 0.29 possibly_damaging(0.607) TCGA-69-7974-01 X 32328370 32328370 C T DMD Missense_Mutation p.M1982I 0.32 benign(0) TCGA-69-7974-01 X 3238377 3238377 G T MXRA5 Silent p.G1783G 0.33 TCGA-69-7974-01 X 37026699 37026699 C A FAM47C Silent p.R72R 0.15 TCGA-69-7974-01 X 37026700 37026700 C A FAM47C Missense_Mutation p.R73S 0.15 tolerated(0.8) benign(0.081) TCGA-69-7974-01 X 37027118 37027118 C G FAM47C Missense_Mutation p.P212R 0.23 tolerated(0.16) probably_damaging(0.991) TCGA-69-7974-01 X 37027216 37027216 C A FAM47C Missense_Mutation p.H245N 0.33 deleterious(0.04) benign(0.005) TCGA-69-7974-01 X 37027473 37027473 C A FAM47C Silent p.L330L 0.27 TCGA-69-7974-01 X 37027474 37027474 C A FAM47C Missense_Mutation p.H331N 0.26 tolerated(0.34) possibly_damaging(0.513) TCGA-69-7974-01 X 37670135 37670135 G T CYBB Nonsense_Mutation p.G560* 0.26 TCGA-69-7974-01 X 41419065 41419065 C A CASK Silent p.V568V 0.10 TCGA-69-7974-01 X 43599971 43599971 C A MAOA Missense_Mutation p.Q384K 0.45 tolerated(0.15) benign(0.001) TCGA-69-7974-01 X 44383422 44383422 T A FUNDC1 3'UTR 0.18 TCGA-69-7974-01 X 47003880 47003880 A T NDUFB11 Missense_Mutation p.Y67N 0.15 deleterious(0) probably_damaging(0.991) TCGA-69-7974-01 X 48460215 48460215 C A WDR13 Missense_Mutation p.T292K 0.31 deleterious(0) probably_damaging(0.992) TCGA-69-7974-01 X 48683010 48683010 C T HDAC6 Silent p.P1212P 0.21 TCGA-69-7974-01 X 48822636 48822636 C A KCND1 Missense_Mutation p.S515I 0.29 tolerated_low_confidence(0.15) probably_damaging(0.949) TCGA-69-7974-01 X 49075338 49075338 C A CACNA1F Intron 0.22 TCGA-69-7974-01 X 50122676 50122676 A T DGKK RNA 0.22 TCGA-69-7974-01 X 50654094 50654094 T C BMP15 Missense_Mutation p.V104A 0.27 tolerated(0.68) benign(0.007) TCGA-69-7974-01 X 53265579 53265579 C A IQSEC2 Nonsense_Mutation p.E1126* 0.31 TCGA-69-7974-01 X 54496846 54496846 C A FGD1 Missense_Mutation p.S235I 0.22 tolerated(0.06) benign(0.336) TCGA-69-7974-01 X 54521721 54521721 C A FGD1 Missense_Mutation p.G49C 0.58 deleterious_low_confidence(0) benign(0.14) TCGA-69-7974-01 X 54776401 54776401 G T ITIH6 Missense_Mutation p.A1290D 0.21 deleterious(0.01) benign(0.279) TCGA-69-7974-01 X 54950927 54950927 G T TRO Missense_Mutation p.R427M 0.39 deleterious(0) unknown(0) TCGA-69-7974-01 X 55757834 55757834 C A RRAGB Silent p.R139R 0.22 TCGA-69-7974-01 X 57620591 57620591 G T ZXDB Missense_Mutation p.G704W 0.29 deleterious(0) probably_damaging(0.995) TCGA-69-7974-01 X 5811462 5811462 G T NLGN4X Missense_Mutation p.P616Q 0.21 tolerated(0.35) benign(0.001) TCGA-69-7974-01 X 5827140 5827141 CA T NLGN4X Frame_Shift_Del p.A257Pfs*7 0.22 TCGA-69-7974-01 X 6069433 6069433 G A NLGN4X Silent p.V25V 0.13 TCGA-69-7974-01 X 63411865 63411865 G T AMER1 Missense_Mutation p.H434Q 0.30 tolerated(0.15) benign(0.016) TCGA-69-7974-01 X 63579329 63579329 G T MTMR8 Missense_Mutation p.L35M 0.22 tolerated(0.06) possibly_damaging(0.817) TCGA-69-7974-01 X 67944270 67944270 G T STARD8 3'UTR 0.40 TCGA-69-7974-01 X 73962409 73962409 G T KIAA2022 Missense_Mutation p.H661Q 0.18 tolerated(1) benign(0) TCGA-69-7974-01 X 79286255 79286255 T A TBX22 Nonsense_Mutation p.L403* 0.30 TCGA-69-7974-01 X 83403092 83403092 G T RPS6KA6 Missense_Mutation p.Q100K 0.16 tolerated(0.77) benign(0.028) TCGA-69-7974-01 X 91133004 91133004 G T PCDH11X Missense_Mutation p.V589L 0.28 deleterious(0) probably_damaging(0.957) TCGA-69-7974-01 X 9864701 9864701 G T SHROOM2 Missense_Mutation p.R918M 0.11 deleterious(0) probably_damaging(0.926) TCGA-69-7974-01 X 99921852 99921852 G C SRPX2 Missense_Mutation p.G295R 0.35 deleterious(0) possibly_damaging(0.894) TCGA-69-7978-01 10 101816844 101816844 T A CPN1 Nonsense_Mutation p.K313* 0.21 TCGA-69-7978-01 10 102789827 102789827 C T PDZD7 Silent p.L50L 0.17 TCGA-69-7978-01 10 118101649 118101649 G T CCDC172 Missense_Mutation p.L128F 0.19 tolerated(0.06) benign(0.033) TCGA-69-7978-01 10 120353647 120353647 G T PRLHR Silent p.I370I 0.14 TCGA-69-7978-01 10 125426523 125426523 C T GPR26 Silent p.R200R 0.32 TCGA-69-7978-01 10 128925939 128925939 A T DOCK1 Missense_Mutation p.T899S 0.23 deleterious(0.03) benign(0.001) TCGA-69-7978-01 10 17032352 17032352 C A CUBN Missense_Mutation p.C1444F 0.18 deleterious(0) probably_damaging(0.998) TCGA-69-7978-01 10 48426650 48426650 C - GDF10 Frame_Shift_Del p.V453Sfs*12 0.19 TCGA-69-7978-01 10 6104150 6104150 C A IL2RA 5'UTR 0.16 TCGA-69-7978-01 10 70045148 70045148 G C PBLD Silent p.L237L 0.05 TCGA-69-7978-01 10 70156548 70156548 C T RUFY2 Silent p.R164R 0.23 TCGA-69-7978-01 10 84711246 84711246 G A NRG3 Missense_Mutation p.R359K 0.15 tolerated(0.39) benign(0.441) TCGA-69-7978-01 10 91143259 91143259 C A IFIT1B Missense_Mutation p.H63Q 0.19 deleterious(0) possibly_damaging(0.902) TCGA-69-7978-01 10 95557155 95557155 A T LGI1 Missense_Mutation p.Q423H 0.20 tolerated(0.6) benign(0.008) TCGA-69-7978-01 10 97918311 97918311 G C ZNF518A RNA 0.14 TCGA-69-7978-01 11 105782648 105782648 G C GRIA4 Intron 0.11 TCGA-69-7978-01 11 108115594 108115594 C T ATM Nonsense_Mutation p.R248* 0.07 TCGA-69-7978-01 11 10823086 10823086 G C EIF4G2 Intron 0.08 TCGA-69-7978-01 11 109294458 109294458 G A C11orf87 Silent p.T33T 0.22 TCGA-69-7978-01 11 118133654 118133654 C G MPZL2 Missense_Mutation p.E73Q 0.12 tolerated(0.2) possibly_damaging(0.787) TCGA-69-7978-01 11 118362500 118362500 G T KMT2A Missense_Mutation p.A1621S 0.08 probably_damaging(0.998) TCGA-69-7978-01 11 119508860 119508860 G T RP11-196E1.3 Intron 0.15 TCGA-69-7978-01 11 122931360 122931360 C A HSPA8 Nonsense_Mutation p.E118* 0.17 TCGA-69-7978-01 11 122968504 122968504 A T CLMP Missense_Mutation p.V62E 0.09 deleterious(0.02) benign(0.048) TCGA-69-7978-01 11 123909440 123909440 G A OR10G7 Missense_Mutation p.T90I 0.07 tolerated(0.2) benign(0.001) TCGA-69-7978-01 11 124793671 124793671 G T HEPACAM Missense_Mutation p.N221K 0.13 deleterious(0) probably_damaging(1) TCGA-69-7978-01 11 1642658 1642658 C A KRTAP5-4 Silent p.V222V 0.06 TCGA-69-7978-01 11 20676307 20676307 G T SLC6A5 Missense_Mutation p.A763S 0.05 tolerated(0.68) benign(0.005) TCGA-69-7978-01 11 26552790 26552790 C - ANO3 Frame_Shift_Del p.Q260Kfs*14 0.08 TCGA-69-7978-01 11 33123761 33123761 G T CSTF3 Missense_Mutation p.P263H 0.17 deleterious(0) probably_damaging(0.998) TCGA-69-7978-01 11 4903240 4903240 C T OR51T1 Silent p.Y64Y 0.05 TCGA-69-7978-01 11 49974221 49974221 T C OR4C13 Missense_Mutation p.S83P 0.15 deleterious_low_confidence(0.04) possibly_damaging(0.883) TCGA-69-7978-01 11 5221385 5221385 G A OR51V1 Silent p.I182I 0.19 TCGA-69-7978-01 11 55798720 55798720 G C OR5AS1 Missense_Mutation p.V276L 0.10 tolerated(0.27) benign(0.058) TCGA-69-7978-01 11 56000134 56000134 T A OR5T2 Silent p.S176S 0.07 TCGA-69-7978-01 11 56020308 56020308 G T OR5T3 Missense_Mutation p.M211I 0.14 tolerated(1) benign(0.001) TCGA-69-7978-01 11 57146163 57146163 G T PRG3 Silent p.L166L 0.06 TCGA-69-7978-01 11 5878349 5878349 C G OR52E8 Missense_Mutation p.C195S 0.07 deleterious(0.01) probably_damaging(0.993) TCGA-69-7978-01 11 59282964 59282964 C T OR4D9 Silent p.F193F 0.11 TCGA-69-7978-01 11 61897383 61897383 G T INCENP Silent p.A128A 0.09 TCGA-69-7978-01 11 6191112 6191112 C A OR52B2 Missense_Mutation p.A149S 0.17 tolerated(0.08) possibly_damaging(0.796) TCGA-69-7978-01 11 62368108 62368108 C G MTA2 Missense_Mutation p.E28Q 0.07 deleterious(0) probably_damaging(0.995) TCGA-69-7978-01 11 62434478 62434478 C T METTL12 Silent p.F226F 0.06 TCGA-69-7978-01 11 62529353 62529353 G A POLR2G Silent p.E33E 0.11 TCGA-69-7978-01 11 6291424 6291424 C T CCKBR Silent p.H170H 0.08 TCGA-69-7978-01 11 64367244 64367244 C T SLC22A12 Silent p.D389D 0.15 TCGA-69-7978-01 11 65167216 65167216 C T FRMD8 Silent p.F271F 0.09 TCGA-69-7978-01 11 65271973 65271973 G C MALAT1 RNA 0.07 TCGA-69-7978-01 11 65273348 65273348 G C MALAT1 RNA 0.07 TCGA-69-7978-01 11 66392097 66392097 G T RBM14 Missense_Mutation p.R250S 0.16 deleterious(0.01) possibly_damaging(0.715) TCGA-69-7978-01 11 6662464 6662464 T C DCHS1 Silent p.V127V 0.25 TCGA-69-7978-01 11 68153797 68153797 G A LRP5 Silent p.V343V 0.16 TCGA-69-7978-01 11 68206130 68206130 C G LRP5 Missense_Mutation p.S1443C 0.06 deleterious(0) possibly_damaging(0.841) TCGA-69-7978-01 11 6913541 6913541 C G OR2D2 Missense_Mutation p.C64S 0.19 tolerated(1) benign(0.003) TCGA-69-7978-01 11 70279260 70279260 G A CTTN Silent p.T403T 0.14 TCGA-69-7978-01 11 726341 726341 C T EPS8L2 Silent p.L597L 0.07 TCGA-69-7978-01 11 72695253 72695253 G A FCHSD2 Silent p.A195A 0.06 TCGA-69-7978-01 11 75431003 75431003 C A MOGAT2 Intron 0.06 TCGA-69-7978-01 11 7847133 7847133 G A OR5P3 Silent p.P129P 0.15 TCGA-69-7978-01 11 7981956 7981956 G T NLRP10 Nonsense_Mutation p.C401* 0.10 TCGA-69-7978-01 11 94310469 94310469 G T PIWIL4 Silent p.L108L 0.09 TCGA-69-7978-01 12 100797850 100797850 T C SLC17A8 Missense_Mutation p.M363T 0.25 deleterious(0) probably_damaging(0.995) TCGA-69-7978-01 12 1009769 1009769 C G WNK1 Missense_Mutation p.D2192E 0.07 tolerated(0.49) benign(0.062) TCGA-69-7978-01 12 107393832 107393832 C T CRY1 Missense_Mutation p.R238Q 0.11 tolerated(0.15) possibly_damaging(0.883) TCGA-69-7978-01 12 109835536 109835536 G T MYO1H Splice_Site p.X148_splice 0.31 TCGA-69-7978-01 12 109948150 109948150 G T UBE3B Missense_Mutation p.E581D 0.30 tolerated(1) benign(0.002) TCGA-69-7978-01 12 112578652 112578652 C T TRAFD1 Silent p.V89V 0.07 TCGA-69-7978-01 12 113612955 113612955 C G DDX54 Missense_Mutation p.E254Q 0.10 deleterious(0) probably_damaging(0.984) TCGA-69-7978-01 12 120288064 120288064 C A CIT Nonsense_Mutation p.E144* 0.10 TCGA-69-7978-01 12 120611477 120611477 C G GCN1L1 Missense_Mutation p.C449S 0.30 benign(0.02) TCGA-69-7978-01 12 126138113 126138113 A T TMEM132B Missense_Mutation p.E698D 0.22 deleterious(0) probably_damaging(0.958) TCGA-69-7978-01 12 13142225 13142225 C T HEBP1 Missense_Mutation p.G68D 0.11 deleterious(0.01) probably_damaging(1) TCGA-69-7978-01 12 13720003 13720003 C A GRIN2B Missense_Mutation p.G852C 0.14 deleterious(0) probably_damaging(0.996) TCGA-69-7978-01 12 13906356 13906356 G T GRIN2B Missense_Mutation p.T302N 0.22 tolerated(0.14) benign(0.277) TCGA-69-7978-01 12 19518978 19518978 A T PLEKHA5 Missense_Mutation p.Q1230L 0.22 deleterious(0) benign(0.097) TCGA-69-7978-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.31 deleterious(0.04) probably_damaging(0.993) TCGA-69-7978-01 12 2786912 2786912 C A CACNA1C Missense_Mutation p.T1705K 0.13 deleterious(0.02) probably_damaging(0.931) TCGA-69-7978-01 12 41587880 41587880 T C PDZRN4 Intron 0.31 TCGA-69-7978-01 12 46244231 46244231 A T ARID2 Missense_Mutation p.L775F 0.06 tolerated_low_confidence(0.08) probably_damaging(0.951) TCGA-69-7978-01 12 47472642 47472642 G A AMIGO2 Silent p.A48A 0.14 TCGA-69-7978-01 12 48578124 48578124 G T C12orf68 Missense_Mutation p.Q73H 0.15 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-69-7978-01 12 50153003 50153003 G T TMBIM6 Splice_Site p.X230_splice 0.19 TCGA-69-7978-01 12 51458218 51458218 C G CSRNP2 Missense_Mutation p.E315Q 0.06 deleterious(0.03) benign(0.355) TCGA-69-7978-01 12 52182532 52182532 G A SCN8A Silent p.K1427K 0.19 TCGA-69-7978-01 12 52884416 52884416 C A KRT6A Missense_Mutation p.K338N 0.29 deleterious(0.02) probably_damaging(0.993) TCGA-69-7978-01 12 55688953 55688953 G TT OR6C6 Frame_Shift_Ins p.Q22Kfs*42 0.20 TCGA-69-7978-01 12 7048325 7048325 G C ATN1 Missense_Mutation p.D1067H 0.10 probably_damaging(0.999) TCGA-69-7978-01 12 72316868 72316868 C G TBC1D15 Missense_Mutation p.P654A 0.05 tolerated_low_confidence(0.07) benign(0.024) TCGA-69-7978-01 12 81503420 81503420 C T ACSS3 Silent p.I131I 0.21 TCGA-69-7978-01 12 8327861 8327861 G A ZNF705A Silent p.L59L 0.08 TCGA-69-7978-01 12 88542217 88542217 T C TMTC3 Missense_Mutation p.L42S 0.28 deleterious(0) probably_damaging(0.997) TCGA-69-7978-01 12 88542218 88542218 G T TMTC3 Missense_Mutation p.L42F 0.30 deleterious(0) probably_damaging(0.997) TCGA-69-7978-01 12 93968830 93968830 A G SOCS2 Missense_Mutation p.T158A 0.29 tolerated(0.33) benign(0) TCGA-69-7978-01 13 25353861 25353861 C T RNF17 Silent p.F162F 0.21 TCGA-69-7978-01 13 27259895 27259895 G T WASF3 Silent p.V474V 0.14 TCGA-69-7978-01 13 39587770 39587770 C A PROSER1 Missense_Mutation p.G540V 0.17 tolerated_low_confidence(0.1) possibly_damaging(0.849) TCGA-69-7978-01 13 43930134 43930134 G C ENOX1 Missense_Mutation p.D248E 0.20 tolerated(0.86) benign(0.007) TCGA-69-7978-01 13 44456357 44456357 G C LACC1 Missense_Mutation p.G200A 0.12 deleterious(0) probably_damaging(0.989) TCGA-69-7978-01 13 51417435 51417435 C T DLEU7 Silent p.A116A 0.16 TCGA-69-7978-01 13 86368911 86368911 T C SLITRK6 Missense_Mutation p.Q578R 0.16 tolerated(0.48) benign(0.002) TCGA-69-7978-01 14 101405898 101405898 C T SNORD113-6 RNA 0.10 TCGA-69-7978-01 14 104195304 104195304 C G ZFYVE21 Missense_Mutation p.L140V 0.09 deleterious(0) probably_damaging(1) TCGA-69-7978-01 14 104552164 104552164 C A ASPG Silent p.T19T 0.12 TCGA-69-7978-01 14 105409122 105409122 G T AHNAK2 Silent p.P4222P 0.10 TCGA-69-7978-01 14 105716701 105716701 G A BTBD6 Missense_Mutation p.E384K 0.10 tolerated(0.14) benign(0.199) TCGA-69-7978-01 14 20389208 20389208 C T OR4K5 Missense_Mutation p.S148F 0.04 deleterious(0) probably_damaging(0.964) TCGA-69-7978-01 14 20585704 20585704 G A OR4K17 Missense_Mutation p.G47R 0.07 deleterious(0) probably_damaging(0.99) TCGA-69-7978-01 14 20848504 20848504 C A TEP1 Missense_Mutation p.Q1631H 0.08 deleterious(0) probably_damaging(0.998) TCGA-69-7978-01 14 21058511 21058511 G A RNASE12 Silent p.S124S 0.08 TCGA-69-7978-01 14 30103642 30103642 G A PRKD1 Silent p.Y432Y 0.09 TCGA-69-7978-01 14 38678666 38678666 C A SSTR1 Silent p.G24G 0.14 TCGA-69-7978-01 14 38723867 38723867 G T CLEC14A Missense_Mutation p.S454Y 0.08 deleterious(0) possibly_damaging(0.671) TCGA-69-7978-01 14 50616825 50616825 T A SOS2 Missense_Mutation p.H762L 0.09 deleterious(0) possibly_damaging(0.899) TCGA-69-7978-01 14 52906028 52906028 C T TXNDC16 Silent p.L696L 0.18 TCGA-69-7978-01 14 53180598 53180598 G T PSMC6 Splice_Site p.X162_splice 0.18 TCGA-69-7978-01 14 60581871 60581871 A T PCNXL4 Missense_Mutation p.H116L 0.16 tolerated(0.66) benign(0) TCGA-69-7978-01 14 71444691 71444691 C A PCNX Missense_Mutation p.S546Y 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.883) TCGA-69-7978-01 14 71513752 71513752 C G PCNX Missense_Mutation p.P1364A 0.12 deleterious(0) probably_damaging(0.998) TCGA-69-7978-01 14 75136414 75136414 T C AREL1 Missense_Mutation p.M618V 0.13 tolerated(1) benign(0) TCGA-69-7978-01 14 75469614 75469614 C T EIF2B2 5'UTR 0.14 TCGA-69-7978-01 14 77767592 77767592 C A POMT2 Missense_Mutation p.R219S 0.08 tolerated(0.1) benign(0.3) TCGA-69-7978-01 14 80130199 80130199 G T NRXN3 Missense_Mutation p.D802Y 0.06 deleterious(0) benign(0) TCGA-69-7978-01 14 89336466 89336466 C A TTC8 Missense_Mutation p.H325N 0.15 tolerated(1) probably_damaging(0.946) TCGA-69-7978-01 14 95085764 95085764 C A SERPINA3 Silent p.L292L 0.07 TCGA-69-7978-01 15 23811410 23811410 C A MKRN3 Missense_Mutation p.P161T 0.17 tolerated(0.1) possibly_damaging(0.702) TCGA-69-7978-01 15 23931707 23931707 G T NDN Silent p.R220R 0.09 TCGA-69-7978-01 15 25223337 25223337 T A SNRPN Intron 0.19 TCGA-69-7978-01 15 28000600 28000600 C A OCA2 Missense_Mutation p.M817I 0.13 deleterious(0.02) possibly_damaging(0.706) TCGA-69-7978-01 15 50168549 50168549 C A ATP8B4 Missense_Mutation p.G985W 0.17 deleterious(0) probably_damaging(1) TCGA-69-7978-01 15 66641752 66641752 G C TIPIN Missense_Mutation p.I104M 0.12 tolerated(0.59) benign(0.257) TCGA-69-7978-01 15 72552002 72552002 C A PARP6 Missense_Mutation p.V253F 0.18 tolerated(0.16) benign(0.397) TCGA-69-7978-01 15 72552003 72552003 C T PARP6 Splice_Site p.X253_splice 0.18 TCGA-69-7978-01 15 76995281 76995281 C A SCAPER Missense_Mutation p.E770D 0.18 tolerated(0.06) possibly_damaging(0.561) TCGA-69-7978-01 15 82336366 82336366 G C MEX3B Missense_Mutation p.S282C 0.05 tolerated(0.08) benign(0.029) TCGA-69-7978-01 15 86123226 86123226 C G AKAP13 Missense_Mutation p.Q643E 0.09 tolerated_low_confidence(0.11) benign(0.006) TCGA-69-7978-01 15 89728730 89728730 G C ABHD2 Missense_Mutation p.K266N 0.10 tolerated(0.34) benign(0.05) TCGA-69-7978-01 16 1538421 1538421 C A PTX4 Silent p.R16R 0.14 TCGA-69-7978-01 16 16367886 16367886 A G NOMO3 Silent p.K770K 0.09 TCGA-69-7978-01 16 1797137 1797137 C T MAPK8IP3 Silent p.A284A 0.12 TCGA-69-7978-01 16 18846339 18846339 C A SMG1 Silent p.V2735V 0.12 TCGA-69-7978-01 16 18856834 18856834 C A SMG1 Missense_Mutation p.D2046Y 0.08 deleterious(0.01) benign(0.172) TCGA-69-7978-01 16 20486716 20486716 G T ACSM2A Missense_Mutation p.M309I 0.08 tolerated(0.17) benign(0) TCGA-69-7978-01 16 21170708 21170708 G T DNAH3 Missense_Mutation p.P19T 0.09 tolerated_low_confidence(0.1) possibly_damaging(0.641) TCGA-69-7978-01 16 2147971 2147971 C A PKD1 Silent p.P3355P 0.24 TCGA-69-7978-01 16 23677036 23677036 C T DCTN5 Silent p.F146F 0.15 TCGA-69-7978-01 16 2880469 2880469 C T ZG16B Silent p.L45L 0.29 TCGA-69-7978-01 16 28970173 28970173 G C NFATC2IP Missense_Mutation p.D328H 0.05 deleterious(0) probably_damaging(1) TCGA-69-7978-01 16 30456114 30456114 T C SEPHS2 Missense_Mutation p.H312R 0.13 possibly_damaging(0.903) TCGA-69-7978-01 16 3072937 3072937 C A HCFC1R1 Missense_Mutation p.R115L 0.19 deleterious_low_confidence(0) possibly_damaging(0.779) TCGA-69-7978-01 16 31073585 31073585 G A ZNF668 Missense_Mutation p.R245C 0.15 deleterious(0) probably_damaging(0.967) TCGA-69-7978-01 16 31895888 31895888 C T ZNF267 Nonsense_Mutation p.Q25* 0.08 TCGA-69-7978-01 16 3304252 3304252 G T MEFV Missense_Mutation p.D272E 0.08 tolerated(0.42) benign(0.37) TCGA-69-7978-01 16 4949122 4949122 C G PPL Splice_Site p.X257_splice 0.07 TCGA-69-7978-01 16 55608556 55608556 G T LPCAT2 Missense_Mutation p.S410I 0.06 tolerated(0.11) benign(0.062) TCGA-69-7978-01 16 55903601 55903601 T G CES5A Missense_Mutation p.D187A 0.17 deleterious(0) probably_damaging(1) TCGA-69-7978-01 16 56388953 56388953 C T RP11-441F2.5 5'Flank 0.08 TCGA-69-7978-01 16 56519616 56519616 C T BBS2 Missense_Mutation p.D649N 0.10 tolerated(0.2) benign(0.009) TCGA-69-7978-01 16 57017540 57017540 G A CETP Missense_Mutation p.E482K 0.06 tolerated(0.07) benign(0.001) TCGA-69-7978-01 16 71218766 71218766 A T HYDIN Splice_Site p.X87_splice 0.09 TCGA-69-7978-01 16 716515 716515 G T WDR90 Missense_Mutation p.V1601F 0.09 deleterious(0) benign(0.298) TCGA-69-7978-01 16 732146 732146 G T JMJD8 3'UTR 0.05 TCGA-69-7978-01 16 74525040 74525040 C G GLG1 Silent p.L436L 0.14 TCGA-69-7978-01 16 75498464 75498464 G T TMEM170A Nonsense_Mutation p.S12* 0.14 TCGA-69-7978-01 16 83941750 83941750 G T MLYCD Missense_Mutation p.V221L 0.06 deleterious(0.01) benign(0.133) TCGA-69-7978-01 17 10319003 10319003 C T MYH8 Silent p.L178L 0.12 TCGA-69-7978-01 17 10408377 10408377 G T MYH1 Missense_Mutation p.S814Y 0.19 deleterious(0.01) possibly_damaging(0.673) TCGA-69-7978-01 17 16691384 16691384 C T CCDC144A 3'UTR 0.05 TCGA-69-7978-01 17 17168235 17168235 C G COPS3 Missense_Mutation p.D168H 0.05 tolerated(0.06) possibly_damaging(0.79) TCGA-69-7978-01 17 17716050 17716050 G C SREBF1 Silent p.G1140G 0.14 TCGA-69-7978-01 17 26911463 26911463 C T SPAG5 Missense_Mutation p.D733N 0.18 deleterious(0.01) possibly_damaging(0.477) TCGA-69-7978-01 17 29676187 29676189 ACA CT NF1 Frame_Shift_Del p.L2413Ffs*5 0.26 TCGA-69-7978-01 17 30380297 30380297 A - LRRC37B Frame_Shift_Del p.R933Gfs*30 0.13 TCGA-69-7978-01 17 3343523 3343523 G T SPATA22 Missense_Mutation p.S337Y 0.16 tolerated(0.46) benign(0.033) TCGA-69-7978-01 17 33513315 33513315 C A UNC45B Intron 0.16 TCGA-69-7978-01 17 39525760 39525760 G A KRT33B Silent p.N81N 0.08 TCGA-69-7978-01 17 42082046 42082046 G A NAGS Silent p.L5L 0.10 TCGA-69-7978-01 17 42328954 42328954 G T SLC4A1 Missense_Mutation p.L772M 0.10 tolerated(0.07) probably_damaging(0.961) TCGA-69-7978-01 17 43516971 43516971 G C PLEKHM1 Silent p.L977L 0.07 TCGA-69-7978-01 17 45915651 45915651 C T SCRN2 Silent p.L368L 0.09 TCGA-69-7978-01 17 48270400 48270400 G A COL1A1 Silent p.P592P 0.08 TCGA-69-7978-01 17 50008411 50008411 G A CA10 Missense_Mutation p.T73I 0.15 tolerated(0.08) probably_damaging(0.995) TCGA-69-7978-01 17 56536228 56536228 C G HSF5 Missense_Mutation p.E541Q 0.04 tolerated(0.17) possibly_damaging(0.488) TCGA-69-7978-01 17 57724852 57724852 C T CLTC Missense_Mutation p.S115F 0.07 deleterious(0) possibly_damaging(0.869) TCGA-69-7978-01 17 59482039 59482039 A T TBX2 Silent p.S320S 0.30 TCGA-69-7978-01 17 60769589 60769589 C A MRC2 Intron 0.30 TCGA-69-7978-01 17 66352936 66352936 A T ARSG Missense_Mutation p.Q232L 0.15 tolerated(0.13) benign(0.315) TCGA-69-7978-01 17 72613353 72613353 C A CD300E Missense_Mutation p.D98Y 0.19 deleterious(0) probably_damaging(1) TCGA-69-7978-01 17 73554252 73554252 G T LLGL2 Missense_Mutation p.V64L 0.16 deleterious(0) benign(0.332) TCGA-69-7978-01 17 7573976 7573976 T A TP53 Nonsense_Mutation p.K351* 0.12 TCGA-69-7978-01 17 78078911 78078911 G C GAA Missense_Mutation p.E176Q 0.06 tolerated(0.13) benign(0.018) TCGA-69-7978-01 17 7849270 7849270 C T CNTROB Silent p.P653P 0.09 TCGA-69-7978-01 17 79094939 79094939 G C AATK Missense_Mutation p.R933G 0.15 deleterious(0) probably_damaging(0.912) TCGA-69-7978-01 17 79244763 79244763 C A SLC38A10 Silent p.P362P 0.18 TCGA-69-7978-01 17 79556065 79556065 G A NPLOC4 Missense_Mutation p.R396C 0.14 deleterious(0) probably_damaging(0.956) TCGA-69-7978-01 17 80708484 80708484 C T FN3K Silent p.T261T 0.10 TCGA-69-7978-01 17 9613293 9613293 G A USP43 Missense_Mutation p.D678N 0.18 deleterious(0) probably_damaging(0.98) TCGA-69-7978-01 18 13885318 13885318 G T MC2R Missense_Mutation p.A67D 0.12 deleterious(0) probably_damaging(1) TCGA-69-7978-01 18 23618527 23618527 T A SS18 Missense_Mutation p.Y291F 0.09 tolerated(0.06) benign(0.347) TCGA-69-7978-01 18 28923479 28923479 C T DSG1 Missense_Mutation p.P585L 0.14 deleterious(0) probably_damaging(0.974) TCGA-69-7978-01 18 3089174 3089174 T A MYOM1 Nonsense_Mutation p.K1379* 0.09 TCGA-69-7978-01 18 32917601 32917601 G A ZNF24 Silent p.F234F 0.15 TCGA-69-7978-01 18 44013365 44013365 G T RNF165 Missense_Mutation p.D92Y 0.17 deleterious(0.03) possibly_damaging(0.903) TCGA-69-7978-01 18 55273958 55273958 G C NARS Missense_Mutation p.P343A 0.17 tolerated(0.78) benign(0.01) TCGA-69-7978-01 18 56646328 56646328 C T ZNF532 Silent p.F1064F 0.06 TCGA-69-7978-01 18 57000323 57000323 C T LMAN1 Missense_Mutation p.M458I 0.12 tolerated(0.21) benign(0.002) TCGA-69-7978-01 18 72103819 72103819 G T FAM69C Silent p.R393R 0.13 TCGA-69-7978-01 18 72346696 72346696 G T ZNF407 Nonsense_Mutation p.G1241* 0.07 TCGA-69-7978-01 18 72346697 72346697 G T ZNF407 Missense_Mutation p.G1241V 0.07 tolerated(0.24) benign(0.001) TCGA-69-7978-01 18 74649226 74649226 C T ZNF236 Missense_Mutation p.T1568M 0.14 deleterious(0) probably_damaging(0.953) TCGA-69-7978-01 18 74649227 74649227 G T ZNF236 Silent p.T1568T 0.14 TCGA-69-7978-01 19 12739298 12739298 G A ZNF791 Missense_Mutation p.E319K 0.08 tolerated(0.29) benign(0.057) TCGA-69-7978-01 19 13034991 13034991 G A FARSA Silent p.V454V 0.12 TCGA-69-7978-01 19 13910546 13910546 T G ZSWIM4 Missense_Mutation p.F56V 0.14 deleterious(0) possibly_damaging(0.504) TCGA-69-7978-01 19 14501735 14501735 G C CD97 Splice_Site p.X64_splice 0.14 TCGA-69-7978-01 19 18277085 18277085 G T PIK3R2 Missense_Mutation p.R511L 0.11 deleterious(0.02) benign(0.088) TCGA-69-7978-01 19 19136694 19136694 C T SUGP2 Missense_Mutation p.E155K 0.11 deleterious(0) possibly_damaging(0.637) TCGA-69-7978-01 19 19136773 19136773 C T SUGP2 Silent p.L128L 0.06 TCGA-69-7978-01 19 19136917 19136917 C G SUGP2 Silent p.L80L 0.15 TCGA-69-7978-01 19 19735238 19735238 A T LPAR2 Missense_Mutation p.Y295N 0.11 deleterious(0) probably_damaging(0.988) TCGA-69-7978-01 19 3207399 3207399 G A NCLN Missense_Mutation p.A522T 0.22 deleterious(0) probably_damaging(0.996) TCGA-69-7978-01 19 33608763 33608763 A T GPATCH1 Missense_Mutation p.E743D 0.13 tolerated(0.11) benign(0.008) TCGA-69-7978-01 19 35832450 35832450 G A CD22 Missense_Mutation p.C571Y 0.05 deleterious(0) probably_damaging(1) TCGA-69-7978-01 19 36259419 36259419 G T C19orf55 3'UTR 0.11 TCGA-69-7978-01 19 36276336 36276336 G A ARHGAP33 Silent p.L631L 0.08 TCGA-69-7978-01 19 37210563 37210563 G A ZNF567 Missense_Mutation p.E282K 0.07 deleterious(0.05) probably_damaging(0.994) TCGA-69-7978-01 19 38689157 38689157 G C SIPA1L3 Missense_Mutation p.A1657P 0.08 deleterious(0) probably_damaging(1) TCGA-69-7978-01 19 38861387 38861387 C G CATSPERG Missense_Mutation p.D1145E 0.13 tolerated_low_confidence(0.14) possibly_damaging(0.621) TCGA-69-7978-01 19 38899479 38899479 G T FAM98C Missense_Mutation p.G336V 0.17 deleterious(0) possibly_damaging(0.876) TCGA-69-7978-01 19 38966058 38966058 G A RYR1 Missense_Mutation p.D1421N 0.18 benign(0.366) TCGA-69-7978-01 19 39034245 39034245 C G RYR1 Missense_Mutation p.S3951C 0.08 benign(0.036) TCGA-69-7978-01 19 39995971 39995971 G T DLL3 Missense_Mutation p.G325C 0.04 deleterious(0) probably_damaging(1) TCGA-69-7978-01 19 40722061 40722061 G T TTC9B 3'UTR 0.15 TCGA-69-7978-01 19 40947420 40947420 T C SERTAD3 Missense_Mutation p.M190V 0.06 deleterious(0.01) possibly_damaging(0.761) TCGA-69-7978-01 19 41384685 41384685 A G CYP2A7 Missense_Mutation p.F271L 0.08 deleterious(0) probably_damaging(1) TCGA-69-7978-01 19 43268068 43268068 G A PSG8 Silent p.L144L 0.11 TCGA-69-7978-01 19 43585354 43585354 T A PSG2 Missense_Mutation p.T37S 0.10 deleterious(0.01) benign(0.03) TCGA-69-7978-01 19 44890898 44890898 T A ZNF285 Missense_Mutation p.Q503H 0.09 tolerated(0.07) possibly_damaging(0.536) TCGA-69-7978-01 19 44932736 44932736 G T ZNF229 Nonsense_Mutation p.Y740* 0.11 TCGA-69-7978-01 19 4513702 4513702 C A PLIN4 Silent p.G76G 0.09 TCGA-69-7978-01 19 47422312 47422312 C G ARHGAP35 Nonsense_Mutation p.S127* 0.09 TCGA-69-7978-01 19 47423193 47423193 G C ARHGAP35 Missense_Mutation p.E421Q 0.10 tolerated(0.8) possibly_damaging(0.791) TCGA-69-7978-01 19 50865480 50865480 G T NAPSA Silent p.A58A 0.22 TCGA-69-7978-01 19 51022444 51022444 A T LRRC4B Missense_Mutation p.Y176N 0.13 deleterious(0.03) benign(0.064) TCGA-69-7978-01 19 51140697 51140697 G T SYT3 5'UTR 0.10 TCGA-69-7978-01 19 51217128 51217128 A G SHANK1 Missense_Mutation p.I240T 0.18 possibly_damaging(0.67) TCGA-69-7978-01 19 51325025 51325025 C A KLK1 Missense_Mutation p.C50F 0.27 deleterious(0) probably_damaging(1) TCGA-69-7978-01 19 51535329 51535329 C T KLK12 Missense_Mutation p.R87Q 0.27 tolerated(0.09) benign(0.421) TCGA-69-7978-01 19 51629336 51629336 A CC SIGLEC9 Splice_Site p.X234_splice 0.18 TCGA-69-7978-01 19 53208615 53208615 G C ZNF611 Missense_Mutation p.P565A 0.07 deleterious(0) probably_damaging(0.996) TCGA-69-7978-01 19 53208651 53208651 G C ZNF611 Missense_Mutation p.L553V 0.08 deleterious(0.01) benign(0.023) TCGA-69-7978-01 19 54782798 54782798 C A LILRB2 Missense_Mutation p.G275V 0.29 deleterious(0) probably_damaging(0.999) TCGA-69-7978-01 19 55144084 55144084 C G LILRB1 Silent p.L277L 0.50 TCGA-69-7978-01 19 58868926 58868926 T A ZNF497 Missense_Mutation p.T26S 0.15 tolerated_low_confidence(0.37) benign(0.001) TCGA-69-7978-01 19 6828129 6828129 G T VAV1 Missense_Mutation p.D324Y 0.19 deleterious(0) probably_damaging(1) TCGA-69-7978-01 19 7585281 7585281 G T ZNF358 Missense_Mutation p.G385C 0.11 deleterious(0) probably_damaging(1) TCGA-69-7978-01 19 9064272 9064272 G C MUC16 Missense_Mutation p.P7725R 0.14 unknown(0) TCGA-69-7978-01 19 9324879 9324879 G T OR7D4 Missense_Mutation p.A212D 0.15 deleterious(0.01) benign(0.222) TCGA-69-7978-01 19 9869104 9869104 T A ZNF846 Missense_Mutation p.I217L 0.25 tolerated(0.35) benign(0.01) TCGA-69-7978-01 1 107867258 107867258 G T NTNG1 Missense_Mutation p.V201F 0.10 tolerated(0.07) probably_damaging(0.913) TCGA-69-7978-01 1 112524602 112524602 G A KCND3 Silent p.P249P 0.08 TCGA-69-7978-01 1 113253648 113253648 G C PPM1J Silent p.V364V 0.22 TCGA-69-7978-01 1 115489940 115489940 A T SYCP1 Missense_Mutation p.K774M 0.20 deleterious(0) probably_damaging(1) TCGA-69-7978-01 1 117156501 117156501 C T IGSF3 Missense_Mutation p.D240N 0.09 deleterious(0) probably_damaging(0.994) TCGA-69-7978-01 1 11854854 11854854 G C MTHFR Missense_Mutation p.F366L 0.14 deleterious(0) probably_damaging(0.999) TCGA-69-7978-01 1 13716967 13716967 G C PRAMEF17 Missense_Mutation p.D152H 0.11 deleterious(0.01) possibly_damaging(0.883) TCGA-69-7978-01 1 145415481 145415481 C A HFE2 Missense_Mutation p.D100E 0.16 deleterious(0) probably_damaging(0.965) TCGA-69-7978-01 1 146757091 146757091 G C CHD1L Missense_Mutation p.E649Q 0.05 deleterious(0.02) benign(0.2) TCGA-69-7978-01 1 149399146 149399146 T A HIST2H3PS2 3'Flank 0.11 TCGA-69-7978-01 1 149883349 149883349 C A SV2A Intron 0.20 TCGA-69-7978-01 1 150241120 150241120 G A APH1A Missense_Mutation p.R31C 0.10 deleterious(0) possibly_damaging(0.84) TCGA-69-7978-01 1 152284484 152284484 C T FLG Missense_Mutation p.E960K 0.07 possibly_damaging(0.824) TCGA-69-7978-01 1 152286394 152286394 C A FLG Missense_Mutation p.G323V 0.22 probably_damaging(0.998) TCGA-69-7978-01 1 152329649 152329649 T A FLG2 Nonsense_Mutation p.R205* 0.14 TCGA-69-7978-01 1 152538372 152538372 C A LCE3E 3'UTR 0.22 TCGA-69-7978-01 1 153907440 153907440 C A DENND4B Missense_Mutation p.A857S 0.21 deleterious(0.01) probably_damaging(0.99) TCGA-69-7978-01 1 154997076 154997076 C G DCST2 Missense_Mutation p.E538D 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-69-7978-01 1 155206055 155206055 T C GBA Missense_Mutation p.Y402C 0.13 deleterious(0) probably_damaging(1) TCGA-69-7978-01 1 155726769 155726769 C T GON4L Missense_Mutation p.G1833R 0.12 deleterious(0) probably_damaging(0.98) TCGA-69-7978-01 1 156843466 156843466 C G NTRK1 Missense_Mutation p.H298D 0.26 tolerated(0.17) probably_damaging(0.949) TCGA-69-7978-01 1 158368648 158368648 G A OR10T2 Silent p.L203L 0.13 TCGA-69-7978-01 1 158609376 158609376 C G SPTA1 Missense_Mutation p.R1659P 0.05 deleterious(0.01) probably_damaging(0.973) TCGA-69-7978-01 1 158687660 158687660 G C OR6K3 Silent p.L82L 0.13 TCGA-69-7978-01 1 160604463 160604463 G C SLAMF1 Missense_Mutation p.P214A 0.06 deleterious(0.02) benign(0.102) TCGA-69-7978-01 1 161044018 161044018 C A PVRL4 Missense_Mutation p.M382I 0.16 tolerated(0.41) benign(0.008) TCGA-69-7978-01 1 161206264 161206264 C A NR1I3 Missense_Mutation p.C31F 0.18 deleterious(0) probably_damaging(0.997) TCGA-69-7978-01 1 166039444 166039444 C T FAM78B 3'UTR 0.12 TCGA-69-7978-01 1 171061908 171061908 A T FMO3 Missense_Mutation p.I37F 0.08 tolerated(0.06) possibly_damaging(0.826) TCGA-69-7978-01 1 171251411 171251411 C A FMO1 Silent p.P374P 0.09 TCGA-69-7978-01 1 17322508 17322508 T C ATP13A2 Missense_Mutation p.N502S 0.08 deleterious(0.03) benign(0.081) TCGA-69-7978-01 1 173570815 173570815 A T SLC9C2 Missense_Mutation p.L34H 0.10 deleterious(0) probably_damaging(0.995) TCGA-69-7978-01 1 179320525 179320525 C T SOAT1 Silent p.F508F 0.09 TCGA-69-7978-01 1 1848413 1848413 G T CALML6 Missense_Mutation p.K133N 0.25 deleterious(0.01) probably_damaging(0.967) TCGA-69-7978-01 1 186294923 186294923 G A TPR Missense_Mutation p.H2029Y 0.06 benign(0) TCGA-69-7978-01 1 190067434 190067434 C G BRINP3 Missense_Mutation p.S672T 0.06 deleterious(0.01) probably_damaging(0.98) TCGA-69-7978-01 1 193046117 193046117 G A TROVE2 Silent p.L341L 0.09 TCGA-69-7978-01 1 197071424 197071424 C T ASPM Silent p.Q2319Q 0.05 TCGA-69-7978-01 1 198691560 198691560 G T PTPRC Nonsense_Mutation p.G559* 0.06 TCGA-69-7978-01 1 198691561 198691561 G T PTPRC Missense_Mutation p.G559V 0.06 deleterious(0) possibly_damaging(0.853) TCGA-69-7978-01 1 200821791 200821791 G C CAMSAP2 Missense_Mutation p.K1196N 0.07 deleterious(0) benign(0.128) TCGA-69-7978-01 1 202843150 202843150 G T RABIF 3'Flank 0.29 TCGA-69-7978-01 1 205035709 205035709 T A CNTN2 Missense_Mutation p.W653R 0.09 deleterious(0) probably_damaging(1) TCGA-69-7978-01 1 205238776 205238776 C T TMCC2 Silent p.A482A 0.11 TCGA-69-7978-01 1 210194497 210194497 G T SYT14 Missense_Mutation p.A159S 0.18 tolerated(0.3) benign(0.011) TCGA-69-7978-01 1 214549599 214549599 T A PTPN14 Missense_Mutation p.E957V 0.17 deleterious(0) probably_damaging(0.979) TCGA-69-7978-01 1 216138684 216138684 G A USH2A Silent p.F2365F 0.07 TCGA-69-7978-01 1 220101717 220101717 G C SLC30A10 Missense_Mutation p.F22L 0.11 deleterious(0.01) probably_damaging(0.914) TCGA-69-7978-01 1 220275470 220275470 G T IARS2 Splice_Site p.X184_splice 0.06 TCGA-69-7978-01 1 220386273 220386273 C G RAB3GAP2 Missense_Mutation p.M114I 0.10 tolerated(0.08) benign(0.003) TCGA-69-7978-01 1 22173847 22173847 C A HSPG2 Missense_Mutation p.A2722S 0.06 benign(0.01) TCGA-69-7978-01 1 225147981 225147981 G T DNAH14 Missense_Mutation p.R115M 0.07 deleterious(0.04) possibly_damaging(0.517) TCGA-69-7978-01 1 228362987 228362987 G T IBA57 Missense_Mutation p.V282F 0.10 deleterious(0) possibly_damaging(0.506) TCGA-69-7978-01 1 228431075 228431075 G T OBSCN Missense_Mutation p.V1133L 0.06 benign(0.063) TCGA-69-7978-01 1 228612890 228612890 G T HIST3H3 Missense_Mutation p.T46K 0.11 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-69-7978-01 1 235652544 235652544 T C B3GALNT2 Missense_Mutation p.H97R 0.08 tolerated(0.56) benign(0) TCGA-69-7978-01 1 236881194 236881194 G A ACTN2 Missense_Mutation p.A55T 0.14 deleterious(0.04) probably_damaging(0.986) TCGA-69-7978-01 1 238049092 238049092 G T ZP4 Missense_Mutation p.P312T 0.12 deleterious(0.03) benign(0.03) TCGA-69-7978-01 1 240458143 240458143 C T FMN2 Missense_Mutation p.S1392F 0.19 probably_damaging(0.992) TCGA-69-7978-01 1 244538728 244538728 G T C1orf100 Silent p.L37L 0.05 TCGA-69-7978-01 1 246714577 246714577 C G TFB2M Missense_Mutation p.D245H 0.10 tolerated(0.48) benign(0.002) TCGA-69-7978-01 1 246755177 246755177 G T CNST Missense_Mutation p.D105Y 0.13 deleterious(0) probably_damaging(0.971) TCGA-69-7978-01 1 247614339 247614339 A T OR2B11 Missense_Mutation p.C316S 0.15 tolerated_low_confidence(0.17) possibly_damaging(0.587) TCGA-69-7978-01 1 248262789 248262789 T A OR2L13 Missense_Mutation p.S38T 0.14 deleterious(0.01) benign(0.002) TCGA-69-7978-01 1 248756713 248756713 G T OR2T10 Silent p.A119A 0.13 TCGA-69-7978-01 1 29581918 29581918 G T PTPRU Missense_Mutation p.G69C 0.08 deleterious(0) probably_damaging(1) TCGA-69-7978-01 1 31501678 31501678 G A PUM1 Nonsense_Mutation p.Q133* 0.10 TCGA-69-7978-01 1 32201227 32201227 T C BAI2 Missense_Mutation p.M1103V 0.15 tolerated(1) benign(0.009) TCGA-69-7978-01 1 35259971 35259971 G A GJA4 Missense_Mutation p.E53K 0.09 tolerated(0.36) benign(0.084) TCGA-69-7978-01 1 37948855 37948855 C T ZC3H12A Silent p.T481T 0.08 TCGA-69-7978-01 1 39322640 39322640 G C RRAGC Missense_Mutation p.P118A 0.12 deleterious(0.02) possibly_damaging(0.721) TCGA-69-7978-01 1 40702936 40702936 G T RLF Missense_Mutation p.Q854H 0.06 tolerated(0.05) benign(0.116) TCGA-69-7978-01 1 40717196 40717196 C G TMCO2 Missense_Mutation p.S160C 0.09 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-69-7978-01 1 43825190 43825190 C G CDC20 Missense_Mutation p.P71A 0.05 deleterious(0) probably_damaging(0.983) TCGA-69-7978-01 1 44437102 44437102 A G DPH2 Silent p.L176L 0.24 TCGA-69-7978-01 1 45809438 45809438 C T TOE1 3'UTR 0.06 TCGA-69-7978-01 1 46769406 46769406 C T UQCRH 5'UTR 0.25 TCGA-69-7978-01 1 60392368 60392368 A T CYP2J2 Missense_Mutation p.H17Q 0.17 tolerated(0.15) benign(0.394) TCGA-69-7978-01 1 65860637 65860637 G T DNAJC6 Missense_Mutation p.G654C 0.05 deleterious(0.01) probably_damaging(1) TCGA-69-7978-01 1 66384438 66384438 G A PDE4B Silent p.E67E 0.07 TCGA-69-7978-01 1 67155919 67155919 T C SGIP1 Missense_Mutation p.I497T 0.16 tolerated(0.26) benign(0.041) TCGA-69-7978-01 1 67155931 67155931 C G SGIP1 Missense_Mutation p.A501G 0.07 deleterious(0.01) probably_damaging(0.964) TCGA-69-7978-01 1 70504741 70504741 G T LRRC7 Silent p.V1040V 0.10 TCGA-69-7978-01 1 70504742 70504742 G T LRRC7 Nonsense_Mutation p.E1041* 0.11 TCGA-69-7978-01 1 7724960 7724960 G T CAMTA1 Missense_Mutation p.G785W 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-69-7978-01 1 77632477 77632477 C A PIGK Missense_Mutation p.R138S 0.08 deleterious(0) probably_damaging(0.973) TCGA-69-7978-01 1 78425925 78425925 G A FUBP1 Missense_Mutation p.P507L 0.07 deleterious(0.01) unknown(0) TCGA-69-7978-01 1 79125060 79125060 G T IFI44 Missense_Mutation p.D302Y 0.04 deleterious(0) possibly_damaging(0.855) TCGA-69-7978-01 1 7993277 7993277 G A TNFRSF9 Silent p.L208L 0.11 TCGA-69-7978-01 1 82417739 82417739 G A LPHN2 Silent p.L565L 0.29 TCGA-69-7978-01 1 82431763 82431763 G C LPHN2 Missense_Mutation p.S663T 0.26 deleterious(0.01) benign(0.297) TCGA-69-7978-01 1 89226021 89226021 G C PKN2 Missense_Mutation p.E156Q 0.14 deleterious(0.02) probably_damaging(0.986) TCGA-69-7978-01 1 92755852 92755852 T C GLMN Silent p.P99P 0.28 TCGA-69-7978-01 20 13463881 13463881 C A TASP1 Missense_Mutation p.K326N 0.20 tolerated(0.16) benign(0.173) TCGA-69-7978-01 20 17462718 17462718 C A PCSK2 3'UTR 0.09 TCGA-69-7978-01 20 17640883 17640883 G - RRBP1 Frame_Shift_Del p.N91Mfs*2 0.35 TCGA-69-7978-01 20 18508255 18508255 G T SEC23B Missense_Mutation p.G370V 0.16 deleterious(0) probably_damaging(0.994) TCGA-69-7978-01 20 18541439 18541439 G A SEC23B 3'UTR 0.14 TCGA-69-7978-01 20 18541448 18541448 G C SEC23B 3'UTR 0.16 TCGA-69-7978-01 20 1961114 1961114 T C PDYN Missense_Mutation p.Y207C 0.13 deleterious(0) probably_damaging(1) TCGA-69-7978-01 20 23065956 23065956 G T CD93 Silent p.R292R 0.07 TCGA-69-7978-01 20 24950256 24950256 A C APMAP Missense_Mutation p.L252V 0.15 tolerated(0.23) benign(0.173) TCGA-69-7978-01 20 25198149 25198149 G T ENTPD6 Missense_Mutation p.Q270H 0.13 deleterious(0.01) benign(0.072) TCGA-69-7978-01 20 2635587 2635587 G A NOP56 Missense_Mutation p.R188H 0.13 deleterious(0) probably_damaging(0.969) TCGA-69-7978-01 20 29976926 29976926 T A DEFB119 Missense_Mutation p.T57S 0.11 tolerated(0.26) possibly_damaging(0.485) TCGA-69-7978-01 20 30193254 30193254 G T ID1 Missense_Mutation p.G22C 0.18 tolerated(0.17) possibly_damaging(0.716) TCGA-69-7978-01 20 30309659 30309659 C G BCL2L1 Missense_Mutation p.Q121H 0.05 tolerated(0.25) benign(0.037) TCGA-69-7978-01 20 3102954 3102954 C T UBOX5 Missense_Mutation p.D111N 0.09 tolerated(0.12) benign(0.002) TCGA-69-7978-01 20 31575559 31575559 G A SUN5 Silent p.H212H 0.19 TCGA-69-7978-01 20 3677417 3677417 C A SIGLEC1 Missense_Mutation p.E833D 0.27 tolerated(0.28) benign(0.074) TCGA-69-7978-01 20 42265891 42265891 A T IFT52 Missense_Mutation p.K373M 0.20 deleterious(0) probably_damaging(0.954) TCGA-69-7978-01 20 43936880 43936880 C G RBPJL Silent p.G40G 0.19 TCGA-69-7978-01 20 48156218 48156218 G T PTGIS Missense_Mutation p.R188S 0.08 tolerated(0.91) benign(0.015) TCGA-69-7978-01 20 49232617 49232617 C T FAM65C Silent p.K86K 0.10 TCGA-69-7978-01 20 50140414 50140414 G C NFATC2 Missense_Mutation p.I122M 0.05 tolerated(0.22) benign(0.002) TCGA-69-7978-01 20 5559172 5559172 C G GPCPD1 Missense_Mutation p.E187Q 0.10 deleterious(0.03) possibly_damaging(0.762) TCGA-69-7978-01 20 55948792 55948792 G T RAE1 Missense_Mutation p.A275S 0.17 tolerated(0.34) possibly_damaging(0.714) TCGA-69-7978-01 20 56137241 56137241 C A PCK1 Silent p.L113L 0.12 TCGA-69-7978-01 20 56186834 56186834 G T ZBP1 Missense_Mutation p.H275N 0.10 tolerated(0.57) benign(0.303) TCGA-69-7978-01 20 56186835 56186835 G T ZBP1 Silent p.L274L 0.09 TCGA-69-7978-01 20 60854217 60854217 G C OSBPL2 Missense_Mutation p.D166H 0.07 deleterious(0.03) probably_damaging(0.991) TCGA-69-7978-01 20 60889692 60889692 G C LAMA5 Silent p.L2762L 0.05 TCGA-69-7978-01 20 62577908 62577908 C G UCKL1 Missense_Mutation p.E68Q 0.07 tolerated(0.12) benign(0.037) TCGA-69-7978-01 20 62837070 62837070 C A MYT1 Nonsense_Mutation p.S105* 0.08 TCGA-69-7978-01 20 745941 745941 C A SLC52A3 Missense_Mutation p.G160C 0.18 deleterious(0) probably_damaging(0.999) TCGA-69-7978-01 20 8639285 8639285 C G PLCB1 Missense_Mutation p.L266V 0.11 deleterious(0.04) benign(0.07) TCGA-69-7978-01 21 19756022 19756022 G T TMPRSS15 Missense_Mutation p.L140M 0.17 tolerated(0.05) possibly_damaging(0.896) TCGA-69-7978-01 21 37581080 37581080 G T DOPEY2 Missense_Mutation p.G187W 0.24 deleterious(0) probably_damaging(0.999) TCGA-69-7978-01 21 37617854 37617854 C G DOPEY2 Missense_Mutation p.F1192L 0.20 tolerated(1) benign(0) TCGA-69-7978-01 21 45504022 45504022 A G TRAPPC10 Missense_Mutation p.Y753C 0.14 deleterious(0) probably_damaging(0.982) TCGA-69-7978-01 21 45741631 45741631 T G PFKL Missense_Mutation p.I404S 0.16 deleterious(0) probably_damaging(0.925) TCGA-69-7978-01 21 47558547 47558547 G T FTCD Missense_Mutation p.L440I 0.46 tolerated(0.96) benign(0.02) TCGA-69-7978-01 22 24434856 24434856 G C CABIN1 Missense_Mutation p.E53Q 0.06 tolerated(0.05) probably_damaging(0.993) TCGA-69-7978-01 22 29092897 29092897 G A CHEK2 Missense_Mutation p.L406F 0.12 deleterious(0) probably_damaging(0.986) TCGA-69-7978-01 22 30856095 30856095 G T SEC14L3 Silent p.V372V 0.14 TCGA-69-7978-01 22 39414032 39414032 G T APOBEC3C Nonsense_Mutation p.E146* 0.14 TCGA-69-7978-01 22 46724732 46724732 C G GTSE1 Silent p.A624A 0.14 TCGA-69-7978-01 22 46807526 46807526 G C CELSR1 Missense_Mutation p.A1581G 0.20 deleterious(0.05) possibly_damaging(0.868) TCGA-69-7978-01 2 103095647 103095647 G C SLC9A4 Silent p.L202L 0.12 TCGA-69-7978-01 2 107460205 107460205 G A ST6GAL2 Missense_Mutation p.R77C 0.11 benign(0.247) TCGA-69-7978-01 2 113243499 113243499 G T TTL Nonsense_Mutation p.E55* 0.11 TCGA-69-7978-01 2 113950027 113950027 G T PSD4 Nonsense_Mutation p.E567* 0.12 TCGA-69-7978-01 2 122216416 122216416 C G CLASP1 Silent p.R438R 0.08 TCGA-69-7978-01 2 125204435 125204435 A T CNTNAP5 Missense_Mutation p.Q280L 0.20 tolerated(0.06) benign(0.019) TCGA-69-7978-01 2 131976352 131976352 G A POTEE Missense_Mutation p.S126N 0.20 deleterious_low_confidence(0) benign(0.213) TCGA-69-7978-01 2 138169212 138169212 C A THSD7B Missense_Mutation p.S910Y 0.11 deleterious(0.01) possibly_damaging(0.781) TCGA-69-7978-01 2 142004888 142004888 G T LRP1B Missense_Mutation p.Q167K 0.14 benign(0.149) TCGA-69-7978-01 2 143676239 143676239 C T KYNU Silent p.G77G 0.16 TCGA-69-7978-01 2 152291976 152291976 G T RIF1 Splice_Site p.X360_splice 0.13 TCGA-69-7978-01 2 155102407 155102407 G T GALNT13 Missense_Mutation p.G257C 0.21 deleterious(0) probably_damaging(1) TCGA-69-7978-01 2 160840566 160840566 C A PLA2R1 Missense_Mutation p.V686F 0.08 deleterious(0) probably_damaging(0.937) TCGA-69-7978-01 2 160840580 160840580 A C PLA2R1 Missense_Mutation p.F681C 0.11 deleterious(0) probably_damaging(0.999) TCGA-69-7978-01 2 166201305 166201305 G A SCN2A Missense_Mutation p.V935M 0.11 deleterious(0) probably_damaging(0.961) TCGA-69-7978-01 2 168107083 168107083 G A XIRP2 Missense_Mutation p.V3061I 0.20 benign(0.004) TCGA-69-7978-01 2 170062993 170062993 G T LRP2 Missense_Mutation p.Q2413K 0.17 benign(0.027) TCGA-69-7978-01 2 172563771 172563771 G A DYNC1I2 Intron 0.07 TCGA-69-7978-01 2 174062930 174062930 G T MLTK Intron 0.14 TCGA-69-7978-01 2 174820696 174820696 G C SP3 Missense_Mutation p.Q182E 0.03 deleterious(0) possibly_damaging(0.68) TCGA-69-7978-01 2 178481900 178481900 C G TTC30A Missense_Mutation p.M510I 0.10 deleterious(0.01) benign(0.047) TCGA-69-7978-01 2 179247153 179247153 G T OSBPL6 Missense_Mutation p.D539Y 0.12 deleterious(0) probably_damaging(0.992) TCGA-69-7978-01 2 179398357 179398357 C G TTN Missense_Mutation p.A34329P 0.13 TCGA-69-7978-01 2 179418066 179418066 C A TTN Missense_Mutation p.G29854V 0.12 TCGA-69-7978-01 2 179433349 179433349 G T TTN Missense_Mutation p.P25837Q 0.18 TCGA-69-7978-01 2 179454006 179454006 G A TTN Missense_Mutation p.P20816S 0.16 TCGA-69-7978-01 2 179569685 179569685 C T TTN Silent p.E9871E 0.12 TCGA-69-7978-01 2 179647563 179647563 C A TTN Missense_Mutation p.V1024F 0.14 TCGA-69-7978-01 2 179736237 179736237 C A CCDC141 Missense_Mutation p.V708L 0.18 tolerated(0.13) benign(0.034) TCGA-69-7978-01 2 182780278 182780278 G T SSFA2 Silent p.L637L 0.12 TCGA-69-7978-01 2 196573540 196573540 G C SLC39A10 Missense_Mutation p.R516T 0.15 tolerated(0.91) possibly_damaging(0.785) TCGA-69-7978-01 2 196682493 196682493 C T DNAH7 Missense_Mutation p.V3118M 0.13 deleterious(0) probably_damaging(0.993) TCGA-69-7978-01 2 202672589 202672589 C A CDK15 Missense_Mutation p.S94R 0.16 deleterious(0.01) benign(0.182) TCGA-69-7978-01 2 207557951 207557951 G T DYTN Missense_Mutation p.Q310K 0.10 tolerated(0.34) benign(0.001) TCGA-69-7978-01 2 212251617 212251617 C A ERBB4 Nonsense_Mutation p.E1148* 0.12 TCGA-69-7978-01 2 21234046 21234046 A T APOB Silent p.S1898S 0.11 TCGA-69-7978-01 2 21242732 21242732 T A APOB Silent p.P954P 0.10 TCGA-69-7978-01 2 213872749 213872749 C T IKZF2 Missense_Mutation p.E306K 0.06 deleterious(0) benign(0.242) TCGA-69-7978-01 2 216182916 216182916 G T ATIC Missense_Mutation p.L61F 0.12 deleterious(0) probably_damaging(1) TCGA-69-7978-01 2 219267764 219267764 G T CTDSP1 Missense_Mutation p.V129L 0.23 deleterious(0) possibly_damaging(0.799) TCGA-69-7978-01 2 219900355 219900355 G T CCDC108 Missense_Mutation p.S130Y 0.11 tolerated(0.61) benign(0.108) TCGA-69-7978-01 2 220112210 220112210 C G STK16 Missense_Mutation p.Q172E 0.04 tolerated(0.72) benign(0.009) TCGA-69-7978-01 2 220136671 220136671 C A TUBA4B RNA 0.12 TCGA-69-7978-01 2 220501108 220501108 C G SLC4A3 Missense_Mutation p.A786G 0.16 tolerated(0.21) benign(0.129) TCGA-69-7978-01 2 224462839 224462839 G T SCG2 Missense_Mutation p.P388T 0.16 deleterious(0.03) probably_damaging(0.965) TCGA-69-7978-01 2 228883483 228883483 C G SPHKAP Missense_Mutation p.R696T 0.16 tolerated(0.33) benign(0.009) TCGA-69-7978-01 2 231775358 231775358 C T GPR55 Missense_Mutation p.G107E 0.07 deleterious(0) probably_damaging(0.999) TCGA-69-7978-01 2 232325213 232325213 C T NCL Missense_Mutation p.E292K 0.04 benign(0.166) TCGA-69-7978-01 2 232326365 232326365 C T NCL Missense_Mutation p.E167K 0.18 unknown(0) TCGA-69-7978-01 2 241969807 241969807 A T SNED1 Missense_Mutation p.D107V 0.12 deleterious(0) probably_damaging(0.999) TCGA-69-7978-01 2 26700551 26700551 G C OTOF Missense_Mutation p.R761G 0.12 deleterious(0.01) benign(0.233) TCGA-69-7978-01 2 27354627 27354627 C G PREB Missense_Mutation p.G358R 0.08 deleterious(0.01) probably_damaging(0.988) TCGA-69-7978-01 2 27606278 27606278 T C PPM1G Missense_Mutation p.M386V 0.12 tolerated(0.16) benign(0.023) TCGA-69-7978-01 2 32735679 32735679 C G BIRC6 Missense_Mutation p.Q3442E 0.07 benign(0.263) TCGA-69-7978-01 2 44079782 44079782 A C ABCG8 Missense_Mutation p.T247P 0.13 deleterious(0) probably_damaging(0.986) TCGA-69-7978-01 2 54883115 54883115 G A SPTBN1 Missense_Mutation p.R2009Q 0.22 deleterious(0.01) benign(0.351) TCGA-69-7978-01 2 71778185 71778185 G T DYSF Missense_Mutation p.G531C 0.15 deleterious(0) probably_damaging(0.981) TCGA-69-7978-01 2 74328994 74328994 C G TET3 Missense_Mutation p.F1558L 0.15 deleterious(0) probably_damaging(0.998) TCGA-69-7978-01 2 74668851 74668851 G C RTKN Silent p.L31L 0.11 TCGA-69-7978-01 2 74834248 74834248 C G M1AP Missense_Mutation p.E177Q 0.07 tolerated(0.4) benign(0.199) TCGA-69-7978-01 2 77746068 77746068 A T LRRTM4 Silent p.S309S 0.18 TCGA-69-7978-01 2 80874841 80874841 T A CTNNA2 Silent p.P854P 0.06 TCGA-69-7978-01 2 85769041 85769041 A T MAT2A Silent p.A165A 0.13 TCGA-69-7978-01 2 89339949 89339949 G T IGKV1-12 Silent p.V41V 0.17 TCGA-69-7978-01 2 90139577 90139577 C A IGKV1D-16 Nonsense_Mutation p.Y116* 0.19 TCGA-69-7978-01 2 95843287 95843287 G T ZNF2 Silent p.L31L 0.17 TCGA-69-7978-01 3 100467175 100467175 C T TFG Nonsense_Mutation p.Q335* 0.14 TCGA-69-7978-01 3 108380804 108380804 G C DZIP3 Missense_Mutation p.L760F 0.11 deleterious(0.01) probably_damaging(0.981) TCGA-69-7978-01 3 111356049 111356049 C G CD96 Nonsense_Mutation p.S459* 0.09 TCGA-69-7978-01 3 111793247 111793247 G A TMPRSS7 Missense_Mutation p.E465K 0.04 deleterious(0) possibly_damaging(0.698) TCGA-69-7978-01 3 113379548 113379548 G A KIAA2018 Silent p.F327F 0.10 TCGA-69-7978-01 3 119347670 119347670 T C PLA1A Missense_Mutation p.I415T 0.14 deleterious(0.03) benign(0.022) TCGA-69-7978-01 3 121340549 121340549 C G FBXO40 Missense_Mutation p.S91R 0.10 deleterious(0) probably_damaging(0.999) TCGA-69-7978-01 3 121341582 121341582 G T FBXO40 Nonsense_Mutation p.E436* 0.12 TCGA-69-7978-01 3 121353122 121353122 G T HCLS1 Missense_Mutation p.P279T 0.14 tolerated(0.23) possibly_damaging(0.641) TCGA-69-7978-01 3 121554116 121554116 A G EAF2 5'UTR 0.19 TCGA-69-7978-01 3 122003780 122003780 G T CASR Silent p.T1003T 0.13 TCGA-69-7978-01 3 124117605 124117605 G T KALRN Missense_Mutation p.V743F 0.14 deleterious(0) unknown(0) TCGA-69-7978-01 3 124951377 124951377 C A ZNF148 Missense_Mutation p.Q731H 0.09 deleterious(0.03) benign(0.064) TCGA-69-7978-01 3 126220124 126220124 C A UROC1 Missense_Mutation p.R361M 0.17 deleterious(0) possibly_damaging(0.907) TCGA-69-7978-01 3 128631652 128631652 C G ACAD9 3'UTR 0.06 TCGA-69-7978-01 3 130305492 130305492 G T COL6A6 Silent p.L1371L 0.07 TCGA-69-7978-01 3 130698120 130698120 T A ATP2C1 Missense_Mutation p.L567Q 0.08 tolerated(0.1) possibly_damaging(0.476) TCGA-69-7978-01 3 130947378 130947378 C T NEK11 Missense_Mutation p.P469L 0.05 deleterious(0) probably_damaging(0.963) TCGA-69-7978-01 3 133475770 133475770 G T TF Missense_Mutation p.A263S 0.14 deleterious(0.02) probably_damaging(0.989) TCGA-69-7978-01 3 135871362 135871362 C A MSL2 Nonsense_Mutation p.E121* 0.07 TCGA-69-7978-01 3 13860824 13860824 C A WNT7A Nonsense_Mutation p.E223* 0.18 TCGA-69-7978-01 3 141692892 141692892 C G TFDP2 Missense_Mutation p.E221Q 0.09 tolerated(0.08) benign(0.291) TCGA-69-7978-01 3 148459479 148459479 G T AGTR1 Missense_Mutation p.W219C 0.10 tolerated(0.2) probably_damaging(0.912) TCGA-69-7978-01 3 15720854 15720854 C G ANKRD28 Missense_Mutation p.D809H 0.13 deleterious(0.04) benign(0.107) TCGA-69-7978-01 3 164776975 164776975 T A SI Missense_Mutation p.Q420L 0.23 tolerated(0.05) probably_damaging(0.917) TCGA-69-7978-01 3 164906057 164906057 C A SLITRK3 Silent p.G854G 0.12 TCGA-69-7978-01 3 164906234 164906234 C T SLITRK3 Silent p.E795E 0.14 TCGA-69-7978-01 3 172115082 172115082 C T FNDC3B Silent p.P1144P 0.10 TCGA-69-7978-01 3 184580772 184580772 G T VPS8 Missense_Mutation p.V438L 0.17 tolerated(1) benign(0.001) TCGA-69-7978-01 3 184910874 184910874 G C EHHADH Missense_Mutation p.H438D 0.09 deleterious(0.01) possibly_damaging(0.784) TCGA-69-7978-01 3 186917910 186917910 A T RTP1 3'UTR 0.17 TCGA-69-7978-01 3 187446979 187446979 G A BCL6 Missense_Mutation p.P405L 0.07 deleterious(0) probably_damaging(0.983) TCGA-69-7978-01 3 193336694 193336694 G A OPA1 Missense_Mutation p.R198H 0.04 tolerated(0.21) benign(0) TCGA-69-7978-01 3 40231823 40231823 G A MYRIP Missense_Mutation p.E512K 0.20 deleterious(0.03) possibly_damaging(0.678) TCGA-69-7978-01 3 432477 432477 A G CHL1 Missense_Mutation p.H855R 0.17 tolerated(1) benign(0.044) TCGA-69-7978-01 3 45874568 45874568 C G LZTFL1 Missense_Mutation p.G144R 0.08 deleterious(0.01) benign(0.418) TCGA-69-7978-01 3 46718391 46718391 C A ALS2CL Missense_Mutation p.V627L 0.18 tolerated(0.1) benign(0.081) TCGA-69-7978-01 3 4702672 4702672 G T ITPR1 Missense_Mutation p.R369S 0.26 tolerated(0.12) probably_damaging(0.966) TCGA-69-7978-01 3 47318870 47318870 C A KIF9 Splice_Site 0.11 TCGA-69-7978-01 3 77651500 77651500 C A ROBO2 Silent p.A1014A 0.22 TCGA-69-7978-01 3 93624628 93624628 C A PROS1 Missense_Mutation p.D201Y 0.08 deleterious(0) probably_damaging(0.994) TCGA-69-7978-01 3 97202815 97202815 T C EPHA6 Silent p.D704D 0.11 TCGA-69-7978-01 3 9807614 9807614 C G OGG1 Missense_Mutation p.P357R 0.21 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-69-7978-01 3 98307610 98307610 C T CPOX Silent p.L300L 0.15 TCGA-69-7978-01 4 10509589 10509589 C T CLNK Silent p.E326E 0.15 TCGA-69-7978-01 4 106861750 106861750 C G NPNT Missense_Mutation p.C270W 0.14 deleterious(0) probably_damaging(0.999) TCGA-69-7978-01 4 113199015 113199015 T G TIFA 3'UTR 0.09 TCGA-69-7978-01 4 114161692 114161692 G C ANK2 Missense_Mutation p.A249P 0.07 probably_damaging(0.997) TCGA-69-7978-01 4 13543758 13543758 G T NKX3-2 Silent p.R287R 0.18 TCGA-69-7978-01 4 13602200 13602200 G T BOD1L1 Silent p.T2108T 0.19 TCGA-69-7978-01 4 148457038 148457038 G T EDNRA Missense_Mutation p.D253Y 0.12 deleterious(0.02) benign(0.082) TCGA-69-7978-01 4 158256939 158256939 C A GRIA2 Nonsense_Mutation p.Y461* 0.19 TCGA-69-7978-01 4 164271803 164271803 G T NPY5R Missense_Mutation p.L126F 0.08 tolerated(0.11) possibly_damaging(0.907) TCGA-69-7978-01 4 164271804 164271804 G T NPY5R Missense_Mutation p.V127F 0.08 deleterious(0) probably_damaging(0.983) TCGA-69-7978-01 4 164393602 164393602 C A TKTL2 Nonsense_Mutation p.G429* 0.08 TCGA-69-7978-01 4 183603152 183603152 C T TENM3 Missense_Mutation p.P674S 0.13 tolerated(0.46) possibly_damaging(0.857) TCGA-69-7978-01 4 20591316 20591316 C A SLIT2 Silent p.P1046P 0.08 TCGA-69-7978-01 4 24838082 24838082 C G CCDC149 Missense_Mutation p.L237F 0.05 deleterious(0.01) probably_damaging(0.989) TCGA-69-7978-01 4 3211676 3211676 G T HTT Silent p.S2138S 0.14 TCGA-69-7978-01 4 3237075 3237075 G C HTT Missense_Mutation p.E2841Q 0.10 probably_damaging(0.936) TCGA-69-7978-01 4 42068596 42068596 C T SLC30A9 Missense_Mutation p.R368C 0.05 deleterious(0) probably_damaging(0.93) TCGA-69-7978-01 4 42403344 42403344 C A SHISA3 Missense_Mutation p.T198N 0.27 deleterious_low_confidence(0.02) benign(0.079) TCGA-69-7978-01 4 70146754 70146754 C A UGT2B28 Missense_Mutation p.T179K 0.08 tolerated(0.12) benign(0.009) TCGA-69-7978-01 4 72423493 72423493 G T SLC4A4 Missense_Mutation p.R943L 0.07 deleterious(0) probably_damaging(1) TCGA-69-7978-01 4 73184361 73184361 A C ADAMTS3 Silent p.L471L 0.07 TCGA-69-7978-01 4 7844972 7844972 G A AFAP1 Missense_Mutation p.S147F 0.08 deleterious(0) probably_damaging(0.989) TCGA-69-7978-01 4 8607910 8607914 GAGGT - CPZ Splice_Site p.X302_splice 0.27 TCGA-69-7978-01 4 88959544 88959544 G T PKD2 Nonsense_Mutation p.G329* 0.19 TCGA-69-7978-01 4 88959545 88959545 G T PKD2 Missense_Mutation p.G329V 0.18 deleterious(0) probably_damaging(0.976) TCGA-69-7978-01 4 95158105 95158105 G C SMARCAD1 Missense_Mutation p.L180F 0.07 deleterious(0.01) probably_damaging(0.975) TCGA-69-7978-01 5 110407741 110407741 G C TSLP Silent p.L51L 0.06 TCGA-69-7978-01 5 112154981 112154981 G A APC Missense_Mutation p.E418K 0.08 benign(0.4) TCGA-69-7978-01 5 112389607 112389607 C T MCC Missense_Mutation p.D755N 0.15 deleterious(0.01) probably_damaging(0.991) TCGA-69-7978-01 5 114469845 114469845 C A TRIM36 Splice_Site p.X416_splice 0.19 TCGA-69-7978-01 5 118469711 118469711 C T DMXL1 Missense_Mutation p.P698S 0.08 tolerated(0.08) possibly_damaging(0.493) TCGA-69-7978-01 5 126774208 126774208 G A MEGF10 Missense_Mutation p.D728N 0.04 deleterious(0.04) possibly_damaging(0.651) TCGA-69-7978-01 5 131321140 131321140 A T ACSL6 Silent p.P292P 0.05 TCGA-69-7978-01 5 133871559 133871559 G A JADE2 Silent p.K4K 0.11 TCGA-69-7978-01 5 137522938 137522938 C T KIF20A Nonsense_Mutation p.Q837* 0.08 TCGA-69-7978-01 5 139743742 139743742 T C SLC4A9 Missense_Mutation p.V477A 0.16 deleterious(0) probably_damaging(0.999) TCGA-69-7978-01 5 140167511 140167511 G T PCDHA1 Missense_Mutation p.G546C 0.12 tolerated_low_confidence(0.16) benign(0.199) TCGA-69-7978-01 5 140176688 140176688 C T PCDHA2 Silent p.L713L 0.04 TCGA-69-7978-01 5 140187276 140187276 C T PCDHA4 Silent p.L168L 0.10 TCGA-69-7978-01 5 140209125 140209125 C A PCDHA6 Missense_Mutation p.D483E 0.06 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-69-7978-01 5 140215132 140215132 C A PCDHA7 Silent p.S388S 0.14 TCGA-69-7978-01 5 140475903 140475903 C T PCDHB2 Missense_Mutation p.A510V 0.04 deleterious_low_confidence(0.01) benign(0.327) TCGA-69-7978-01 5 140562653 140562653 C - PCDHB16 Frame_Shift_Del p.P174Qfs*8 0.13 TCGA-69-7978-01 5 140595569 140595569 G T PCDHB13 Missense_Mutation p.R625L 0.09 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-69-7978-01 5 140625641 140625641 T A PCDHB15 Missense_Mutation p.N165K 0.18 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-69-7978-01 5 140720231 140720231 C T PCDHGA2 Missense_Mutation p.P565S 0.11 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-69-7978-01 5 140750407 140750407 G C PCDHGB3 Missense_Mutation p.G149A 0.10 deleterious(0.01) probably_damaging(0.957) TCGA-69-7978-01 5 140755507 140755507 G A PCDHGA6 Silent p.V619V 0.08 TCGA-69-7978-01 5 140812413 140812413 C T PCDHGA12 Missense_Mutation p.A696V 0.07 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-69-7978-01 5 140866889 140866889 C T PCDHGC4 Missense_Mutation p.R717C 0.07 deleterious(0) probably_damaging(0.943) TCGA-69-7978-01 5 141242828 141242828 C A PCDH1 Missense_Mutation p.R1023L 0.15 tolerated(0.09) benign(0) TCGA-69-7978-01 5 147821718 147821718 C T FBXO38 3'UTR 0.10 TCGA-69-7978-01 5 149576355 149576355 C A SLC6A7 Silent p.G98G 0.10 TCGA-69-7978-01 5 151784081 151784081 G C NMUR2 Silent p.V198V 0.15 TCGA-69-7978-01 5 156589768 156589768 C T FAM71B Missense_Mutation p.S503N 0.16 deleterious(0.04) benign(0.287) TCGA-69-7978-01 5 157160017 157160017 C G THG1L Missense_Mutation p.F111L 0.06 tolerated(0.22) benign(0.182) TCGA-69-7978-01 5 167673848 167673848 C G TENM2 Missense_Mutation p.S1968R 0.10 tolerated(0.07) probably_damaging(0.999) TCGA-69-7978-01 5 167855088 167855088 G A WWC1 Missense_Mutation p.A621T 0.10 deleterious(0.01) possibly_damaging(0.875) TCGA-69-7978-01 5 169461445 169461445 G T DOCK2 Silent p.S1170S 0.07 TCGA-69-7978-01 5 174869491 174869491 G T DRD1 Nonsense_Mutation p.Y204* 0.16 TCGA-69-7978-01 5 176338368 176338368 C T UIMC1 Silent p.E540E 0.17 TCGA-69-7978-01 5 176792980 176792980 A G RGS14 Missense_Mutation p.D21G 0.13 deleterious(0.01) benign(0.021) TCGA-69-7978-01 5 178391899 178391899 G C ZNF454 Missense_Mutation p.S165T 0.08 tolerated(0.6) benign(0.009) TCGA-69-7978-01 5 179382637 179382637 A C RNF130 3'UTR 0.08 TCGA-69-7978-01 5 1801523 1801523 C A NDUFS6 5'UTR 0.12 TCGA-69-7978-01 5 21854783 21854783 T A CDH12 Missense_Mutation p.T215S 0.11 tolerated(0.09) possibly_damaging(0.487) TCGA-69-7978-01 5 24593554 24593554 G T CDH10 Missense_Mutation p.L16M 0.05 tolerated(0.29) benign(0.446) TCGA-69-7978-01 5 36143411 36143411 A C LMBRD2 Missense_Mutation p.F14C 0.20 tolerated(0.09) probably_damaging(0.999) TCGA-69-7978-01 5 36255669 36255669 G A RANBP3L Silent p.F334F 0.08 TCGA-69-7978-01 5 39311284 39311284 A G C9 Missense_Mutation p.Y356H 0.11 deleterious(0) probably_damaging(1) TCGA-69-7978-01 5 453717 453717 G T EXOC3 Silent p.L199L 0.07 TCGA-69-7978-01 5 64082385 64082385 G A CWC27 Missense_Mutation p.R177K 0.15 deleterious(0) probably_damaging(0.994) TCGA-69-7978-01 5 68737434 68737434 C G MARVELD2 Missense_Mutation p.Q544E 0.10 deleterious(0.01) possibly_damaging(0.787) TCGA-69-7978-01 5 71654149 71654149 C T PTCD2 Silent p.L354L 0.11 TCGA-69-7978-01 5 72302361 72302361 G A FCHO2 Missense_Mutation p.M195I 0.29 deleterious(0) benign(0.193) TCGA-69-7978-01 5 75979628 75979628 C A IQGAP2 Missense_Mutation p.P1264H 0.16 deleterious(0.02) possibly_damaging(0.832) TCGA-69-7978-01 5 75979705 75979705 G A IQGAP2 Missense_Mutation p.D1290N 0.08 tolerated(0.09) possibly_damaging(0.597) TCGA-69-7978-01 5 7707859 7707859 G A ADCY2 Missense_Mutation p.G437S 0.11 deleterious(0.01) possibly_damaging(0.548) TCGA-69-7978-01 5 83402609 83402609 G C EDIL3 Nonsense_Mutation p.S170* 0.04 TCGA-69-7978-01 5 95103838 95103838 C A RHOBTB3 Missense_Mutation p.P417Q 0.05 deleterious(0.01) possibly_damaging(0.64) TCGA-69-7978-01 5 98115292 98115292 C T RGMB Nonsense_Mutation p.Q90* 0.05 TCGA-69-7978-01 6 110059537 110059537 G T FIG4 Missense_Mutation p.G219V 0.10 tolerated(0.05) possibly_damaging(0.612) TCGA-69-7978-01 6 112382436 112382436 G T WISP3 Silent p.G115G 0.14 TCGA-69-7978-01 6 117113927 117113927 G T GPRC6A Missense_Mutation p.T720K 0.10 deleterious(0.01) possibly_damaging(0.826) TCGA-69-7978-01 6 11714709 11714709 A G ADTRP 3'UTR 0.06 TCGA-69-7978-01 6 117246651 117246651 T G RFX6 Missense_Mutation p.S572A 0.24 deleterious(0.01) probably_damaging(0.97) TCGA-69-7978-01 6 11768563 11768563 T C ADTRP Silent p.R87R 0.11 TCGA-69-7978-01 6 129636958 129636958 G A LAMA2 Missense_Mutation p.E1263K 0.19 deleterious(0.01) possibly_damaging(0.79) TCGA-69-7978-01 6 138202513 138202513 A G TNFAIP3 3'UTR 0.26 TCGA-69-7978-01 6 143091739 143091739 G A HIVEP2 Silent p.V1379V 0.08 TCGA-69-7978-01 6 146276325 146276325 G T SHPRH Missense_Mutation p.P45Q 0.14 tolerated_low_confidence(0.06) benign(0.005) TCGA-69-7978-01 6 152832213 152832213 G T SYNE1 Missense_Mutation p.T112N 0.22 probably_damaging(0.995) TCGA-69-7978-01 6 155581525 155581525 C A TFB1M Missense_Mutation p.G226C 0.15 deleterious(0) probably_damaging(0.994) TCGA-69-7978-01 6 158449833 158449833 C T SYNJ2 Missense_Mutation p.S87F 0.07 deleterious(0) probably_damaging(0.993) TCGA-69-7978-01 6 167549614 167549614 C G CCR6 5'UTR 0.13 TCGA-69-7978-01 6 24134624 24134624 C G NRSN1 Silent p.R23R 0.05 TCGA-69-7978-01 6 25913580 25913580 C A SLC17A2 Missense_Mutation p.K418N 0.10 tolerated(0.14) benign(0.006) TCGA-69-7978-01 6 26033628 26033628 C A HIST1H2AB Nonsense_Mutation p.E57* 0.13 TCGA-69-7978-01 6 26056402 26056402 C T HIST1H1C Silent p.K85K 0.15 TCGA-69-7978-01 6 2749627 2749627 C G MYLK4 5'UTR 0.18 TCGA-69-7978-01 6 28539827 28539827 C A SCAND3 Missense_Mutation p.G1280V 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-69-7978-01 6 30857061 30857061 C G DDR1 Missense_Mutation p.L91V 0.12 deleterious(0) probably_damaging(1) TCGA-69-7978-01 6 31601698 31601698 G T PRRC2A Missense_Mutation p.A1551S 0.07 unknown(0) TCGA-69-7978-01 6 31773871 31773871 C A LSM2 Nonsense_Mutation p.E18* 0.06 TCGA-69-7978-01 6 31996586 31996586 C T C4B Missense_Mutation p.S1116L 0.10 deleterious(0) probably_damaging(0.916) TCGA-69-7978-01 6 32713635 32713635 T A HLA-DQA2 Nonsense_Mutation p.C133* 0.18 TCGA-69-7978-01 6 35107926 35107926 G C TCP11 Intron 0.13 TCGA-69-7978-01 6 41197817 41197817 G C TREML4 Missense_Mutation p.E155Q 0.09 tolerated(0.16) benign(0.048) TCGA-69-7978-01 6 42236986 42236986 C T TRERF1 Missense_Mutation p.E115K 0.09 deleterious_low_confidence(0) possibly_damaging(0.833) TCGA-69-7978-01 6 43267784 43267784 C A SLC22A7 Silent p.A269A 0.11 TCGA-69-7978-01 6 50696596 50696596 A G TFAP2D Missense_Mutation p.D209G 0.16 deleterious(0.01) probably_damaging(0.953) TCGA-69-7978-01 6 5545560 5545560 A T FARS2 Missense_Mutation p.K351M 0.23 tolerated(0.07) benign(0.04) TCGA-69-7978-01 6 64423011 64423011 C G PHF3 Missense_Mutation p.P1843A 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-69-7978-01 6 69653834 69653834 G C BAI3 Silent p.P381P 0.12 TCGA-69-7978-01 7 100190679 100190679 G A FBXO24 Intron 0.20 TCGA-69-7978-01 7 100470816 100470816 C G TRIP6 Missense_Mutation p.S441C 0.09 deleterious(0) probably_damaging(1) TCGA-69-7978-01 7 100479722 100479722 G A SRRT Missense_Mutation p.M149I 0.09 tolerated(0.05) benign(0.012) TCGA-69-7978-01 7 100841488 100841488 G C MOGAT3 Missense_Mutation p.L218V 0.14 tolerated(0.1) possibly_damaging(0.856) TCGA-69-7978-01 7 100876128 100876128 C T CLDN15 Silent p.L150L 0.06 TCGA-69-7978-01 7 101063350 101063350 G T COL26A1 Missense_Mutation p.R84L 0.11 deleterious(0) probably_damaging(0.991) TCGA-69-7978-01 7 105148701 105148701 C A PUS7 Missense_Mutation p.D87Y 0.12 deleterious(0.02) possibly_damaging(0.905) TCGA-69-7978-01 7 106508275 106508275 G T PIK3CG Missense_Mutation p.R90L 0.11 tolerated(0.47) benign(0.001) TCGA-69-7978-01 7 107329520 107329520 C A SLC26A4 Missense_Mutation p.P342T 0.09 deleterious(0.02) benign(0.04) TCGA-69-7978-01 7 1098037 1098037 T C GPR146 Missense_Mutation p.Y296H 0.07 deleterious(0.02) possibly_damaging(0.452) TCGA-69-7978-01 7 113558725 113558725 C G PPP1R3A Silent p.L109L 0.11 TCGA-69-7978-01 7 120901703 120901703 G T CPED1 Intron 0.12 TCGA-69-7978-01 7 120979187 120979187 G C WNT16 Missense_Mutation p.E296Q 0.11 tolerated(0.1) benign(0.038) TCGA-69-7978-01 7 124404542 124404542 C - GPR37 Frame_Shift_Del p.R164Vfs*7 0.15 TCGA-69-7978-01 7 126173386 126173386 C T GRM8 Missense_Mutation p.V684I 0.23 tolerated(0.12) probably_damaging(0.997) TCGA-69-7978-01 7 127343232 127343232 G T SND1 Missense_Mutation p.R232L 0.22 deleterious(0) benign(0.064) TCGA-69-7978-01 7 131833385 131833385 C T PLXNA4 Missense_Mutation p.A1561T 0.15 tolerated(0.27) benign(0.266) TCGA-69-7978-01 7 133861753 133861753 G A LRGUK Missense_Mutation p.V349I 0.09 tolerated(0.14) benign(0.067) TCGA-69-7978-01 7 134253022 134253022 A T AKR1B15 Missense_Mutation p.Q88L 0.20 deleterious(0.03) possibly_damaging(0.823) TCGA-69-7978-01 7 138579244 138579244 C A KIAA1549 Silent p.P1292P 0.23 TCGA-69-7978-01 7 138921821 138921821 C T UBN2 Missense_Mutation p.A180V 0.12 deleterious(0.02) probably_damaging(0.97) TCGA-69-7978-01 7 141491079 141491079 G T TAS2R5 3'UTR 0.14 TCGA-69-7978-01 7 142001149 142001149 G C TRBV2 Missense_Mutation p.D48H 0.25 TCGA-69-7978-01 7 142723856 142723856 C A OR9A2 Missense_Mutation p.V122L 0.18 deleterious(0) benign(0.391) TCGA-69-7978-01 7 143453572 143453572 C A CTAGE6 Missense_Mutation p.D394Y 0.10 deleterious(0) benign(0.001) TCGA-69-7978-01 7 143633062 143633062 C T OR2F2 Missense_Mutation p.T246M 0.26 tolerated(0.14) possibly_damaging(0.647) TCGA-69-7978-01 7 143771765 143771765 A T OR2A25 Silent p.G151G 0.27 TCGA-69-7978-01 7 146829576 146829576 G A CNTNAP2 Silent p.K441K 0.10 TCGA-69-7978-01 7 148802173 148802173 G A ZNF425 Missense_Mutation p.H264Y 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-69-7978-01 7 149520902 149520902 C A SSPO RNA 0.29 TCGA-69-7978-01 7 150389686 150389686 A G GIMAP2 Silent p.P104P 0.28 TCGA-69-7978-01 7 151878782 151878782 C A KMT2C Missense_Mutation p.D2055Y 0.17 probably_damaging(0.996) TCGA-69-7978-01 7 1539523 1539523 G A INTS1 Silent p.V227V 0.06 TCGA-69-7978-01 7 21516765 21516765 G T SP4 Nonsense_Mutation p.G583* 0.12 TCGA-69-7978-01 7 2279288 2279288 C G FTSJ2 Silent p.G21G 0.03 TCGA-69-7978-01 7 29160638 29160638 G A CPVL Silent p.L14L 0.10 TCGA-69-7978-01 7 30492289 30492289 C A NOD1 Silent p.L248L 0.10 TCGA-69-7978-01 7 31683082 31683082 C G CCDC129 Missense_Mutation p.L726V 0.13 tolerated(0.87) benign(0.003) TCGA-69-7978-01 7 34981404 34981404 A T DPY19L1 Silent p.V481V 0.17 TCGA-69-7978-01 7 4169646 4169646 A T SDK1 Missense_Mutation p.Y1349F 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-69-7978-01 7 42004817 42004817 G T GLI3 Missense_Mutation p.P1285H 0.17 tolerated_low_confidence(0.53) benign(0.061) TCGA-69-7978-01 7 44098501 44098501 G C DBNL Missense_Mutation p.E261Q 0.08 tolerated(1) benign(0.001) TCGA-69-7978-01 7 44619123 44619123 C G TMED4 Missense_Mutation p.Q213H 0.11 deleterious(0) probably_damaging(0.998) TCGA-69-7978-01 7 47944035 47944035 C A PKD1L1 Missense_Mutation p.W624L 0.18 deleterious(0) probably_damaging(1) TCGA-69-7978-01 7 48452149 48452149 G T ABCA13 Missense_Mutation p.G4143V 0.13 probably_damaging(0.991) TCGA-69-7978-01 7 50057884 50057884 G C ZPBP Silent p.P245P 0.07 TCGA-69-7978-01 7 53103577 53103577 G T POM121L12 Silent p.P71P 0.30 TCGA-69-7978-01 7 5569226 5569226 G A ACTB Silent p.F21F 0.22 TCGA-69-7978-01 7 6777334 6777334 C T PMS2CL RNA 0.14 TCGA-69-7978-01 7 73085404 73085404 C T VPS37D Nonsense_Mutation p.Q152* 0.30 TCGA-69-7978-01 7 75517357 75517357 A T RHBDD2 Missense_Mutation p.H262L 0.16 tolerated(0.43) benign(0.185) TCGA-69-7978-01 7 82595455 82595455 C G PCLO Missense_Mutation p.E1217Q 0.05 unknown(0) TCGA-69-7978-01 7 87196198 87196198 G T ABCB1 Missense_Mutation p.H145N 0.13 tolerated(0.08) benign(0.01) TCGA-69-7978-01 7 91624064 91624064 C G AKAP9 Missense_Mutation p.Q236E 0.07 probably_damaging(0.99) TCGA-69-7978-01 7 93116291 93116291 C T CALCR Missense_Mutation p.M19I 0.11 deleterious_low_confidence(0.01) benign(0.228) TCGA-69-7978-01 7 98527770 98527770 G T TRRAP Nonsense_Mutation p.E1112* 0.26 TCGA-69-7978-01 7 98609796 98609796 G A TRRAP Missense_Mutation p.E3800K 0.09 benign(0.032) TCGA-69-7978-01 8 101586163 101586163 G T SNX31 Nonsense_Mutation p.S418* 0.12 TCGA-69-7978-01 8 10396100 10396100 A G PRSS55 Missense_Mutation p.T286A 0.10 deleterious(0.01) probably_damaging(0.995) TCGA-69-7978-01 8 10583683 10583683 C A SOX7 Silent p.P296P 0.14 TCGA-69-7978-01 8 110305637 110305637 C A NUDCD1 Missense_Mutation p.L192F 0.19 tolerated(0.13) benign(0.035) TCGA-69-7978-01 8 113256649 113256649 C A CSMD3 Missense_Mutation p.W3459L 0.06 deleterious(0.01) benign(0.267) TCGA-69-7978-01 8 113323207 113323207 C G CSMD3 Missense_Mutation p.A2629P 0.05 tolerated(0.05) probably_damaging(0.942) TCGA-69-7978-01 8 114031382 114031382 G T CSMD3 Missense_Mutation p.P315Q 0.20 deleterious(0.02) benign(0.159) TCGA-69-7978-01 8 124141397 124141397 G A TBC1D31 Missense_Mutation p.E737K 0.09 deleterious(0.01) possibly_damaging(0.686) TCGA-69-7978-01 8 12957116 12957116 G C DLC1 Silent p.L910L 0.12 TCGA-69-7978-01 8 133146536 133146536 C A KCNQ3 Splice_Site p.X600_splice 0.14 TCGA-69-7978-01 8 139255292 139255292 C A FAM135B Missense_Mutation p.G188C 0.26 deleterious(0) possibly_damaging(0.873) TCGA-69-7978-01 8 139606328 139606328 G T COL22A1 Missense_Mutation p.P1516H 0.10 unknown(0) TCGA-69-7978-01 8 142367939 142367939 C T GPR20 Missense_Mutation p.G29R 0.07 tolerated_low_confidence(0.57) benign(0.021) TCGA-69-7978-01 8 145557236 145557236 G T SCRT1 Missense_Mutation p.L220M 0.23 tolerated(0.71) unknown(0) TCGA-69-7978-01 8 145583752 145583752 G A SLC52A2 Silent p.L200L 0.10 TCGA-69-7978-01 8 19809383 19809383 A T LPL Missense_Mutation p.Q118L 0.11 deleterious(0) probably_damaging(0.944) TCGA-69-7978-01 8 20077985 20077985 G C ATP6V1B2 3'UTR 0.22 TCGA-69-7978-01 8 23115956 23115956 T A CHMP7 Missense_Mutation p.D318E 0.08 tolerated(0.1) probably_damaging(0.941) TCGA-69-7978-01 8 24365022 24365022 C T ADAM7 Silent p.I746I 0.10 TCGA-69-7978-01 8 24365023 24365023 G C ADAM7 Missense_Mutation p.A747P 0.09 deleterious_low_confidence(0.02) possibly_damaging(0.771) TCGA-69-7978-01 8 27967935 27967935 A T ELP3 Missense_Mutation p.T148S 0.12 tolerated(0.15) benign(0.107) TCGA-69-7978-01 8 42612178 42612178 G T CHRNA6 Silent p.I89I 0.11 TCGA-69-7978-01 8 57025989 57025989 C A MOS Missense_Mutation p.V185F 0.11 deleterious(0) probably_damaging(0.956) TCGA-69-7978-01 8 6293637 6293638 - T MCPH1 Frame_Shift_Ins p.E132* 0.10 TCGA-69-7978-01 8 77765631 77765631 G T ZFHX4 Missense_Mutation p.Q2158H 0.16 probably_damaging(0.991) TCGA-69-7978-01 8 89180114 89180114 G A MMP16 Silent p.L165L 0.12 TCGA-69-7978-01 8 91643889 91643889 C A TMEM64 Missense_Mutation p.G281V 0.11 deleterious(0) probably_damaging(1) TCGA-69-7978-01 8 95399223 95399223 T A RAD54B Silent p.R658R 0.23 TCGA-69-7978-01 8 98078341 98078341 G T CPQ Missense_Mutation p.E386D 0.12 tolerated(0.13) benign(0.043) TCGA-69-7978-01 8 98656866 98656866 G C MTDH Silent p.P44P 0.05 TCGA-69-7978-01 9 100194383 100194383 G C TDRD7 Silent p.P142P 0.17 TCGA-69-7978-01 9 104316344 104316344 A T RNF20 Missense_Mutation p.D659V 0.06 deleterious(0) probably_damaging(0.986) TCGA-69-7978-01 9 107379808 107379808 G C OR13C9 Silent p.L226L 0.18 TCGA-69-7978-01 9 111962562 111962562 C A EPB41L4B Nonsense_Mutation p.E667* 0.11 TCGA-69-7978-01 9 117798425 117798425 C G TNC Missense_Mutation p.E1870Q 0.07 tolerated(0.16) probably_damaging(0.992) TCGA-69-7978-01 9 125377732 125377732 C T OR1Q1 Missense_Mutation p.S239F 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-69-7978-01 9 125486685 125486685 A G OR1L4 Silent p.P139P 0.07 TCGA-69-7978-01 9 126165738 126165738 C G DENND1A Missense_Mutation p.R507T 0.09 deleterious(0.02) possibly_damaging(0.694) TCGA-69-7978-01 9 126794716 126794716 C A LHX2 Silent p.A317A 0.18 TCGA-69-7978-01 9 130494456 130494456 C T TOR2A Missense_Mutation p.E275K 0.16 deleterious(0) possibly_damaging(0.893) TCGA-69-7978-01 9 130689583 130689583 C A PIP5KL1 Missense_Mutation p.G196V 0.13 deleterious(0.04) probably_damaging(0.986) TCGA-69-7978-01 9 132484531 132484531 C A PRRX2 Missense_Mutation p.P221H 0.15 deleterious(0.03) possibly_damaging(0.533) TCGA-69-7978-01 9 132637028 132637028 G A USP20 Silent p.T638T 0.17 TCGA-69-7978-01 9 134098172 134098172 T C NUP214 Silent p.S1919S 0.21 TCGA-69-7978-01 9 136220611 136220611 C T SURF1 Missense_Mutation p.D170N 0.09 deleterious(0.03) benign(0.318) TCGA-69-7978-01 9 136268870 136268870 C A C9orf96 Silent p.I507I 0.17 TCGA-69-7978-01 9 137007123 137007123 C G WDR5 Nonsense_Mutation p.S106* 0.15 TCGA-69-7978-01 9 137007537 137007537 C G WDR5 Nonsense_Mutation p.S146* 0.11 TCGA-69-7978-01 9 139301920 139301920 C A SDCCAG3 Missense_Mutation p.D166Y 0.07 deleterious(0) probably_damaging(0.998) TCGA-69-7978-01 9 139302003 139302003 C A SDCCAG3 Missense_Mutation p.R138M 0.23 deleterious(0) probably_damaging(0.992) TCGA-69-7978-01 9 139400303 139400303 C A NOTCH1 Missense_Mutation p.A1349S 0.09 tolerated(0.88) benign(0.019) TCGA-69-7978-01 9 140034044 140034044 C G GRIN1 Missense_Mutation p.R36G 0.09 tolerated(0.26) benign(0.031) TCGA-69-7978-01 9 15728011 15728011 G T CCDC171 Missense_Mutation p.D613Y 0.23 deleterious(0) probably_damaging(1) TCGA-69-7978-01 9 19516323 19516323 C A SLC24A2 Missense_Mutation p.C605F 0.15 deleterious(0) possibly_damaging(0.644) TCGA-69-7978-01 9 23692770 23692770 C G ELAVL2 Missense_Mutation p.E289Q 0.17 deleterious(0.02) probably_damaging(0.969) TCGA-69-7978-01 9 34381439 34381439 C A C9orf24 Missense_Mutation p.A134S 0.20 tolerated(0.14) benign(0.14) TCGA-69-7978-01 9 35611863 35611863 T C CD72 Silent p.S296S 0.08 TCGA-69-7978-01 9 35794019 35794019 A T NPR2 Silent p.A264A 0.11 TCGA-69-7978-01 9 35906562 35906562 C A HRCT1 Missense_Mutation p.P93H 0.27 deleterious_low_confidence(0) unknown(0) TCGA-69-7978-01 9 37744400 37744400 T A FRMPD1 Missense_Mutation p.S791T 0.14 tolerated(0.28) benign(0.052) TCGA-69-7978-01 9 5054759 5054759 G C JAK2 Missense_Mutation p.E271Q 0.15 tolerated(0.66) benign(0.01) TCGA-69-7978-01 9 79320772 79320772 C T PRUNE2 Missense_Mutation p.E2140K 0.18 tolerated(1) benign(0.003) TCGA-69-7978-01 9 79320977 79320977 C A PRUNE2 Missense_Mutation p.W2071C 0.04 deleterious(0) probably_damaging(0.999) TCGA-69-7978-01 9 84208119 84208119 C A TLE1 Nonsense_Mutation p.G468* 0.10 TCGA-69-7978-01 9 88193913 88193913 T C AGTPBP1 Silent p.V1048V 0.21 TCGA-69-7978-01 X 100604800 100604800 G T BTK 3'UTR 0.34 TCGA-69-7978-01 X 101615515 101615515 G C NXF2B 3'UTR 0.12 TCGA-69-7978-01 X 103420446 103420446 G C FAM199X Missense_Mutation p.E114Q 0.09 deleterious_low_confidence(0.05) benign(0.215) TCGA-69-7978-01 X 107978200 107978200 C T IRS4 Missense_Mutation p.E459K 0.05 deleterious_low_confidence(0.03) benign(0.041) TCGA-69-7978-01 X 110978350 110978350 G T ALG13 Missense_Mutation p.K843N 0.42 deleterious(0) possibly_damaging(0.722) TCGA-69-7978-01 X 118221541 118221541 C - KIAA1210 Frame_Shift_Del p.A1218Hfs*41 0.21 TCGA-69-7978-01 X 119077510 119077510 C G NKAP Missense_Mutation p.R20T 0.13 tolerated(0.06) benign(0.339) TCGA-69-7978-01 X 124097385 124097385 C A TENM1 Splice_Site p.X73_splice 0.34 TCGA-69-7978-01 X 128695183 128695183 A G OCRL Silent p.E284E 0.17 TCGA-69-7978-01 X 129506968 129506968 C G SLC25A14 3'UTR 0.12 TCGA-69-7978-01 X 130408705 130408705 C T IGSF1 Missense_Mutation p.E1212K 0.12 tolerated(0.41) probably_damaging(0.998) TCGA-69-7978-01 X 134991898 134991898 G C SAGE1 Missense_Mutation p.L561F 0.07 tolerated(0.06) probably_damaging(0.986) TCGA-69-7978-01 X 135427294 135427294 G T GPR112 Missense_Mutation p.A477S 0.37 deleterious(0) benign(0.162) TCGA-69-7978-01 X 135432185 135432185 C A GPR112 Missense_Mutation p.A2107E 0.34 deleterious(0.02) benign(0.273) TCGA-69-7978-01 X 13636054 13636054 T C EGFL6 Silent p.S328S 0.30 TCGA-69-7978-01 X 14026964 14026964 C G GEMIN8 3'UTR 0.44 TCGA-69-7978-01 X 144905477 144905477 A G SLITRK2 Missense_Mutation p.K512E 0.08 tolerated(0.34) benign(0.045) TCGA-69-7978-01 X 145078215 145078215 G T MIR892A RNA 0.27 TCGA-69-7978-01 X 148048561 148048561 C T AFF2 Missense_Mutation p.S1052F 0.16 deleterious(0) probably_damaging(0.972) TCGA-69-7978-01 X 151304086 151304086 G T MAGEA10 Silent p.R3R 0.23 TCGA-69-7978-01 X 152482452 152482452 G C MAGEA1 Missense_Mutation p.Q187E 0.17 tolerated(0.18) benign(0.02) TCGA-69-7978-01 X 153042823 153042823 G T PLXNB3 Silent p.L1719L 0.17 TCGA-69-7978-01 X 15560166 15560166 T C BMX Missense_Mutation p.Y486H 0.12 deleterious(0) probably_damaging(1) TCGA-69-7978-01 X 17768290 17768290 C T SCML1 Missense_Mutation p.P194S 0.29 tolerated(0.35) benign(0.001) TCGA-69-7978-01 X 22196464 22196464 C G PHEX Missense_Mutation p.F519L 0.08 tolerated(0.15) benign(0.006) TCGA-69-7978-01 X 27997945 27997945 G T DCAF8L1 Missense_Mutation p.Q503K 0.26 deleterious(0.01) benign(0.009) TCGA-69-7978-01 X 32429947 32429947 G T DMD Silent p.S1385S 0.29 TCGA-69-7978-01 X 41084348 41084348 T - USP9X Frame_Shift_Del p.L2341Cfs*5 0.27 TCGA-69-7978-01 X 44703841 44703841 A T DUSP21 Missense_Mutation p.N155Y 0.14 tolerated(0.29) benign(0.02) TCGA-69-7978-01 X 49962199 49962199 T A AKAP4 Missense_Mutation p.Y57F 0.36 tolerated(0.16) benign(0.087) TCGA-69-7978-01 X 52825389 52825389 C A SPANXN5 3'UTR 0.36 TCGA-69-7978-01 X 53225896 53225896 C A KDM5C Nonsense_Mutation p.E985* 0.25 TCGA-69-7978-01 X 5811563 5811563 G C NLGN4X Nonsense_Mutation p.Y582* 0.27 TCGA-69-7978-01 X 62974222 62974222 C G ARHGEF9 5'UTR 0.11 TCGA-69-7978-01 X 69283019 69283019 A G OTUD6A Silent p.A215A 0.18 TCGA-69-7978-01 X 73046055 73046055 C A XIST RNA 0.13 TCGA-69-7978-01 X 99942238 99942238 G A SYTL4 Missense_Mutation p.T337M 0.17 deleterious(0) probably_damaging(0.939) TCGA-69-7979-01 10 102242111 102242111 G A WNT8B Silent p.L198L 0.19 TCGA-69-7979-01 10 106865211 106865211 C A SORCS3 Missense_Mutation p.P384T 0.29 deleterious(0.02) probably_damaging(0.963) TCGA-69-7979-01 10 106982966 106982966 G T SORCS3 Missense_Mutation p.G943W 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-69-7979-01 10 112838481 112838481 C A ADRA2A Missense_Mutation p.R243S 0.25 deleterious(0) probably_damaging(0.988) TCGA-69-7979-01 10 117704247 117704247 G A ATRNL1 Missense_Mutation p.R1366Q 0.24 tolerated(0.05) benign(0.119) TCGA-69-7979-01 10 119027194 119027194 C A SLC18A2 Missense_Mutation p.A378E 0.11 deleterious(0) possibly_damaging(0.616) TCGA-69-7979-01 10 12131144 12131144 G T DHTKD1 Missense_Mutation p.V293F 0.09 deleterious(0.01) possibly_damaging(0.806) TCGA-69-7979-01 10 1230921 1230921 C A ADARB2 Missense_Mutation p.W641C 0.15 deleterious(0) probably_damaging(1) TCGA-69-7979-01 10 123239428 123239428 C A FGFR2 Missense_Mutation p.M804I 0.15 deleterious(0.02) probably_damaging(0.974) TCGA-69-7979-01 10 123842969 123842969 G A TACC2 Silent p.G318G 0.10 TCGA-69-7979-01 10 124377706 124377706 G T DMBT1 Nonsense_Mutation p.G1560* 0.14 TCGA-69-7979-01 10 129690842 129690842 T G CLRN3 Silent p.A69A 0.17 TCGA-69-7979-01 10 134012450 134012450 C G DPYSL4 Missense_Mutation p.D262E 0.49 tolerated(0.27) benign(0.06) TCGA-69-7979-01 10 134660573 134660573 C A TTC40 Nonsense_Mutation p.E2044* 0.30 TCGA-69-7979-01 10 134940763 134940763 C A GPR123 Missense_Mutation p.P143H 0.48 deleterious(0) probably_damaging(0.996) TCGA-69-7979-01 10 135106005 135106005 G A TUBGCP2 Silent p.Y432Y 0.38 TCGA-69-7979-01 10 135371370 135371370 G C SYCE1 Missense_Mutation p.H124Q 0.33 tolerated(1) benign(0) TCGA-69-7979-01 10 16941027 16941027 C T CUBN Missense_Mutation p.G2856S 0.13 tolerated(1) benign(0.017) TCGA-69-7979-01 10 17401513 17401513 C G ST8SIA6 Missense_Mutation p.R126T 0.52 deleterious(0.03) probably_damaging(0.992) TCGA-69-7979-01 10 23393072 23393072 G T MSRB2 Splice_Site p.X40_splice 0.52 TCGA-69-7979-01 10 23409813 23409813 C A MSRB2 3'UTR 0.12 TCGA-69-7979-01 10 24922390 24922390 G C ARHGAP21 Silent p.V127V 0.13 TCGA-69-7979-01 10 25887511 25887511 G T GPR158 Missense_Mutation p.A986S 0.05 tolerated(0.6) benign(0.011) TCGA-69-7979-01 10 26286130 26286130 G T MYO3A Missense_Mutation p.V151L 0.20 deleterious(0) possibly_damaging(0.686) TCGA-69-7979-01 10 26789900 26789900 A T APBB1IP Missense_Mutation p.S105C 0.32 tolerated(0.13) benign(0.014) TCGA-69-7979-01 10 26939617 26939617 C A LINC00202-2 RNA 0.39 TCGA-69-7979-01 10 28971329 28971329 G T BAMBI Nonstop_Mutation p.*261Lext*5 0.30 TCGA-69-7979-01 10 29839887 29839887 G A SVIL Nonsense_Mutation p.Q156* 0.38 TCGA-69-7979-01 10 30316523 30316523 T G KIAA1462 Missense_Mutation p.S852R 0.06 tolerated(0.13) probably_damaging(0.951) TCGA-69-7979-01 10 30915081 30915081 C A LYZL2 Missense_Mutation p.R130I 0.16 tolerated(0.06) probably_damaging(0.981) TCGA-69-7979-01 10 34688331 34688331 T A PARD3 Nonsense_Mutation p.K273* 0.69 TCGA-69-7979-01 10 35896753 35896753 C A GJD4 Silent p.A104A 0.32 TCGA-69-7979-01 10 37430799 37430799 C A ANKRD30A Missense_Mutation p.P269H 0.21 deleterious(0.01) benign(0.326) TCGA-69-7979-01 10 43315873 43315873 G T BMS1 Splice_Site p.X923_splice 0.50 TCGA-69-7979-01 10 43615061 43615061 C A RET Silent p.G825G 0.30 TCGA-69-7979-01 10 44052834 44052834 C A ZNF239 Nonsense_Mutation p.E232* 0.19 TCGA-69-7979-01 10 44053267 44053267 C A ZNF239 Missense_Mutation p.Q87H 0.42 tolerated(0.4) possibly_damaging(0.862) TCGA-69-7979-01 10 46274527 46274527 G T FAM21C Nonsense_Mutation p.E808* 0.09 TCGA-69-7979-01 10 48388049 48388049 C A RBP3 Silent p.T943T 0.45 TCGA-69-7979-01 10 48389716 48389716 G T RBP3 Silent p.R388R 0.15 TCGA-69-7979-01 10 4872963 4872963 G T AKR1E2 Missense_Mutation p.V46F 0.32 deleterious(0) probably_damaging(0.97) TCGA-69-7979-01 10 4995133 4995133 G T AKR1C1 5'UTR 0.41 TCGA-69-7979-01 10 50227585 50227585 C A VSTM4 3'UTR 0.50 TCGA-69-7979-01 10 55566785 55566785 G A PCDH15 Missense_Mutation p.P1534S 0.32 tolerated_low_confidence(0.56) benign(0.004) TCGA-69-7979-01 10 55582336 55582336 G T PCDH15 Missense_Mutation p.T1719K 0.20 tolerated_low_confidence(0.1) benign(0.005) TCGA-69-7979-01 10 55943255 55943255 G T PCDH15 Silent p.S513S 0.14 TCGA-69-7979-01 10 5978520 5978520 C G FBXO18 Silent p.V1028V 0.16 TCGA-69-7979-01 10 60559983 60559983 C T BICC1 Silent p.S585S 0.14 TCGA-69-7979-01 10 68139036 68139036 C A CTNNA3 Missense_Mutation p.A536S 0.18 tolerated(0.19) unknown(0) TCGA-69-7979-01 10 73515128 73515128 C T C10orf54 Missense_Mutation p.A222T 0.35 tolerated(0.05) benign(0.224) TCGA-69-7979-01 10 73515147 73515147 G C C10orf54 Silent p.V215V 0.32 TCGA-69-7979-01 10 75104936 75104936 C T TTC18 Missense_Mutation p.G166S 0.29 tolerated(0.62) benign(0.028) TCGA-69-7979-01 10 8006719 8006719 G T TAF3 Nonsense_Mutation p.E416* 0.28 TCGA-69-7979-01 10 8007183 8007183 G T TAF3 Missense_Mutation p.R570S 0.17 deleterious_low_confidence(0.04) benign(0.018) TCGA-69-7979-01 10 82095904 82095904 G T DYDC1 3'UTR 0.21 TCGA-69-7979-01 10 85992382 85992382 G T LRIT1 Silent p.V391V 0.35 TCGA-69-7979-01 10 87966388 87966388 G T GRID1 Missense_Mutation p.Q85K 0.33 tolerated(1) benign(0.285) TCGA-69-7979-01 10 88768781 88768781 A G RP11-96C23.10 3'Flank 0.17 TCGA-69-7979-01 10 90524299 90524299 G T LIPN Missense_Mutation p.R120L 0.34 deleterious(0) probably_damaging(0.998) TCGA-69-7979-01 10 91477354 91477354 T C KIF20B Silent p.A382A 0.31 TCGA-69-7979-01 10 96484144 96484144 C A CYP2C18 Silent p.R335R 0.28 TCGA-69-7979-01 10 98380292 98380292 C A PIK3AP1 Missense_Mutation p.R586S 0.24 tolerated(0.26) benign(0.297) TCGA-69-7979-01 10 99025670 99025670 C A ARHGAP19 Missense_Mutation p.G90V 0.39 tolerated(0.25) benign(0.005) TCGA-69-7979-01 11 1015781 1015781 T C MUC6 Silent p.T2340T 0.15 TCGA-69-7979-01 11 103006602 103006602 A T DYNC2H1 Silent p.A833A 0.19 TCGA-69-7979-01 11 106849345 106849345 C A GUCY1A2 Missense_Mutation p.G163C 0.10 deleterious(0) probably_damaging(0.993) TCGA-69-7979-01 11 108057289 108057289 G A NPAT Nonsense_Mutation p.Q216* 0.29 TCGA-69-7979-01 11 108062850 108062850 C A NPAT Missense_Mutation p.Q95H 0.25 deleterious(0) probably_damaging(0.983) TCGA-69-7979-01 11 108143448 108143448 G T ATM Splice_Site p.X1052_splice 0.27 TCGA-69-7979-01 11 1099265 1099265 C A MUC2 Missense_Mutation p.P2415H 0.16 unknown(0) TCGA-69-7979-01 11 111229626 111229626 C A POU2AF1 Missense_Mutation p.A12S 0.29 tolerated(0.15) benign(0.209) TCGA-69-7979-01 11 111420472 111420472 G T LAYN Missense_Mutation p.K179N 0.11 deleterious(0) probably_damaging(0.987) TCGA-69-7979-01 11 112064282 112064282 C A BCO2 Missense_Mutation p.Q127K 0.09 tolerated(0.15) probably_damaging(0.93) TCGA-69-7979-01 11 113650948 113650948 C A CLDN25 Missense_Mutation p.T144K 0.20 deleterious(0) probably_damaging(0.974) TCGA-69-7979-01 11 116661500 116661500 C T APOA5 Missense_Mutation p.E149K 0.29 tolerated(0.11) probably_damaging(1) TCGA-69-7979-01 11 117280536 117280536 C T CEP164 Silent p.S1317S 0.15 TCGA-69-7979-01 11 117299290 117299290 C A DSCAML1 Missense_Mutation p.R2032S 0.21 tolerated_low_confidence(0.07) benign(0.039) TCGA-69-7979-01 11 119291587 119291587 A T THY1 Missense_Mutation p.L10Q 0.11 deleterious(0) probably_damaging(0.946) TCGA-69-7979-01 11 123900867 123900867 G C OR10G8 Missense_Mutation p.A180P 0.38 deleterious(0.02) possibly_damaging(0.908) TCGA-69-7979-01 11 123909279 123909279 C G OR10G7 Missense_Mutation p.A144P 0.38 deleterious(0) probably_damaging(0.976) TCGA-69-7979-01 11 124440496 124440496 G T OR8A1 Missense_Mutation p.G178C 0.23 deleterious(0.01) probably_damaging(0.93) TCGA-69-7979-01 11 124748657 124748657 C A ROBO3 Silent p.P1166P 0.32 TCGA-69-7979-01 11 124793767 124793767 A T HEPACAM Missense_Mutation p.N189K 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-69-7979-01 11 124794810 124794810 G C HEPACAM Missense_Mutation p.Q81E 0.27 deleterious(0.03) probably_damaging(0.994) TCGA-69-7979-01 11 126143342 126143342 G T FOXRED1 Missense_Mutation p.V177L 0.45 tolerated(1) benign(0.006) TCGA-69-7979-01 11 128786482 128786482 G C KCNJ5 Missense_Mutation p.R372S 0.23 tolerated(0.98) benign(0.002) TCGA-69-7979-01 11 130319491 130319491 G T ADAMTS15 Missense_Mutation p.G208V 0.27 tolerated(0.18) benign(0.342) TCGA-69-7979-01 11 130343026 130343026 G T ADAMTS15 Silent p.G721G 0.15 TCGA-69-7979-01 11 132016188 132016188 C T NTM Silent p.D60D 0.15 TCGA-69-7979-01 11 132306087 132306087 C G OPCML Missense_Mutation p.R277P 0.12 tolerated(0.24) benign(0.362) TCGA-69-7979-01 11 133712000 133712000 G C SPATA19 Missense_Mutation p.S146R 0.49 tolerated(0.16) possibly_damaging(0.883) TCGA-69-7979-01 11 1629391 1629391 C G KRTAP5-3 Silent p.G75G 0.58 TCGA-69-7979-01 11 17150887 17150887 C A PIK3C2A Missense_Mutation p.A787S 0.37 tolerated(0.36) benign(0.063) TCGA-69-7979-01 11 17545010 17545010 C A USH1C Missense_Mutation p.V259F 0.50 deleterious(0) probably_damaging(0.947) TCGA-69-7979-01 11 17742857 17742857 C T MYOD1 Silent p.I255I 0.31 TCGA-69-7979-01 11 18472722 18472722 G A LDHC 3'UTR 0.27 TCGA-69-7979-01 11 18735841 18735841 G T IGSF22 Missense_Mutation p.A594D 0.25 deleterious(0) possibly_damaging(0.762) TCGA-69-7979-01 11 194415 194415 C T SCGB1C1 Intron 0.18 TCGA-69-7979-01 11 22777410 22777410 G T GAS2 Missense_Mutation p.D212Y 0.11 deleterious(0.02) benign(0.015) TCGA-69-7979-01 11 2433484 2433484 C A TRPM5 Splice_Site p.X786_splice 0.50 TCGA-69-7979-01 11 27528279 27528279 G T LIN7C Silent p.P7P 0.43 TCGA-69-7979-01 11 30601971 30601971 G T MPPED2 5'UTR 0.19 TCGA-69-7979-01 11 3063445 3063446 - A CARS Frame_Shift_Ins p.G106Wfs*39 0.18 TCGA-69-7979-01 11 30915864 30915864 C A DCDC1 Silent p.V1608V 0.29 TCGA-69-7979-01 11 30944108 30944108 C G DCDC1 Missense_Mutation p.R1025S 0.27 tolerated(0.67) benign(0.402) TCGA-69-7979-01 11 31112973 31112973 G C DCDC1 Nonsense_Mutation p.S735* 0.17 TCGA-69-7979-01 11 31312344 31312344 A T DCDC1 Silent p.P270P 0.11 TCGA-69-7979-01 11 31815208 31815208 G A PAX6 Missense_Mutation p.T317I 0.31 tolerated(0.41) benign(0.009) TCGA-69-7979-01 11 32413533 32413533 G A WT1 Missense_Mutation p.H473Y 0.13 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-69-7979-01 11 32456479 32456479 G T WT1 Missense_Mutation p.S138Y 0.41 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-69-7979-01 11 33564182 33564182 C T KIAA1549L Missense_Mutation p.P61L 0.24 deleterious_low_confidence(0) benign(0.295) TCGA-69-7979-01 11 34979028 34979028 T C PDHX Missense_Mutation p.V147A 0.12 tolerated(0.82) benign(0.001) TCGA-69-7979-01 11 36103304 36103304 G T LDLRAD3 Missense_Mutation p.D99Y 0.43 deleterious(0) probably_damaging(1) TCGA-69-7979-01 11 3716722 3716722 T A NUP98 Missense_Mutation p.Q1375L 0.41 tolerated(0.15) benign(0.286) TCGA-69-7979-01 11 40136788 40136788 T G LRRC4C Missense_Mutation p.Y352S 0.09 tolerated(0.83) benign(0.002) TCGA-69-7979-01 11 40136925 40136925 G C LRRC4C Missense_Mutation p.N306K 0.30 deleterious(0.01) possibly_damaging(0.514) TCGA-69-7979-01 11 4104572 4104572 C T STIM1 Nonsense_Mutation p.Q440* 0.10 TCGA-69-7979-01 11 4389230 4389230 C A OR52B4 Missense_Mutation p.C99F 0.14 deleterious(0) probably_damaging(0.932) TCGA-69-7979-01 11 45893643 45893643 G T CRY2 Missense_Mutation p.G569V 0.16 tolerated_low_confidence(0.11) benign(0.001) TCGA-69-7979-01 11 45937333 45937333 C A PEX16 Missense_Mutation p.V94L 0.15 deleterious(0) probably_damaging(0.994) TCGA-69-7979-01 11 4661983 4661983 A T OR51D1 Missense_Mutation p.Q321H 0.33 tolerated(0.18) benign(0.001) TCGA-69-7979-01 11 4674175 4674175 C A OR51E1 Missense_Mutation p.T140K 0.28 deleterious(0) probably_damaging(0.962) TCGA-69-7979-01 11 46842770 46842770 T A CKAP5 Missense_Mutation p.S5C 0.12 deleterious(0) probably_damaging(0.971) TCGA-69-7979-01 11 4703890 4703890 C A OR51E2 Nonsense_Mutation p.G18* 0.09 TCGA-69-7979-01 11 4703939 4703939 C A OR51E2 Translation_Start_Site p.M1? 0.52 deleterious(0) possibly_damaging(0.885) TCGA-69-7979-01 11 47363652 47363652 G A MYBPC3 Silent p.D560D 0.25 TCGA-69-7979-01 11 47367761 47367761 T C MYBPC3 Missense_Mutation p.T363A 0.09 tolerated(0.81) benign(0.03) TCGA-69-7979-01 11 47599534 47599534 C A KBTBD4 Missense_Mutation p.E22D 0.36 tolerated(0.2) benign(0.002) TCGA-69-7979-01 11 48510641 48510641 C A OR4A47 Silent p.L99L 0.49 TCGA-69-7979-01 11 4929011 4929011 A T OR51A7 Missense_Mutation p.S138C 0.18 tolerated(0.06) possibly_damaging(0.838) TCGA-69-7979-01 11 50003624 50003624 C T OR4C12 Silent p.L138L 0.09 TCGA-69-7979-01 11 5080352 5080352 G T OR52E2 Missense_Mutation p.P169H 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-69-7979-01 11 5269514 5269514 C G HBG1 3'UTR 0.29 TCGA-69-7979-01 11 5322336 5322336 G T OR51B4 Missense_Mutation p.P281T 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-69-7979-01 11 55063071 55063071 C T TRIM51HP RNA 0.45 TCGA-69-7979-01 11 55432954 55432954 C A OR4C6 Missense_Mutation p.F104L 0.11 tolerated_low_confidence(0.37) probably_damaging(0.998) TCGA-69-7979-01 11 55541293 55541293 C A OR5D13 Missense_Mutation p.A127E 0.09 deleterious(0) probably_damaging(0.998) TCGA-69-7979-01 11 55563926 55563926 G T OR5D14 Missense_Mutation p.V299L 0.36 deleterious(0.01) possibly_damaging(0.467) TCGA-69-7979-01 11 55579067 55579067 A T OR5L1 Missense_Mutation p.N42I 0.26 deleterious(0) probably_damaging(1) TCGA-69-7979-01 11 55653003 55653003 C A TRIM51 Missense_Mutation p.S33R 0.11 deleterious(0) possibly_damaging(0.69) TCGA-69-7979-01 11 55655604 55655604 C A TRIM51 Silent p.R202R 0.23 TCGA-69-7979-01 11 55681287 55681287 T A OR5W2 Missense_Mutation p.M258L 0.29 deleterious(0.01) possibly_damaging(0.532) TCGA-69-7979-01 11 55703782 55703782 A T OR5I1 Missense_Mutation p.M32K 0.29 deleterious(0) benign(0.004) TCGA-69-7979-01 11 55735198 55735198 T A OR10AG1 Missense_Mutation p.I248F 0.26 deleterious(0.01) possibly_damaging(0.5) TCGA-69-7979-01 11 55927573 55927573 G T OR8K5 Missense_Mutation p.S74Y 0.35 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-69-7979-01 11 56043564 56043564 C A OR5T1 Silent p.P150P 0.28 TCGA-69-7979-01 11 56113723 56113723 G A OR8K1 Missense_Mutation p.R70K 0.46 tolerated_low_confidence(0.09) benign(0.092) TCGA-69-7979-01 11 56128471 56128471 T - OR8J1 Frame_Shift_Del p.Y252Mfs*31 0.10 TCGA-69-7979-01 11 56237685 56237685 C G OR5M3 Missense_Mutation p.V97L 0.34 tolerated(0.23) benign(0.002) TCGA-69-7979-01 11 5624865 5624865 G A TRIM6-TRIM34 Missense_Mutation p.C136Y 0.16 deleterious(0) probably_damaging(0.973) TCGA-69-7979-01 11 56309923 56309923 T C OR5M11 Missense_Mutation p.K271E 0.37 deleterious(0.01) possibly_damaging(0.558) TCGA-69-7979-01 11 5905928 5905928 A G OR52E4 Missense_Mutation p.M136V 0.14 tolerated(0.2) benign(0.001) TCGA-69-7979-01 11 59245107 59245107 G T OR4D10 Missense_Mutation p.A69S 0.28 deleterious(0.05) benign(0.15) TCGA-69-7979-01 11 59556353 59556353 G C STX3 Missense_Mutation p.K74N 0.36 deleterious(0.04) possibly_damaging(0.76) TCGA-69-7979-01 11 59828636 59828636 G C MS4A3 Translation_Start_Site p.M1? 0.31 deleterious(0.01) probably_damaging(0.994) TCGA-69-7979-01 11 59828637 59828637 G C MS4A3 Missense_Mutation p.A2P 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-69-7979-01 11 60075666 60075666 C G MS4A4A 3'UTR 0.32 TCGA-69-7979-01 11 60102502 60102502 T A MS4A6E Missense_Mutation p.V45D 0.39 deleterious(0) possibly_damaging(0.876) TCGA-69-7979-01 11 60183867 60183867 G T MS4A14 Nonsense_Mutation p.E509* 0.29 TCGA-69-7979-01 11 6048589 6048589 G A OR56A1 Missense_Mutation p.P116S 0.30 tolerated(0.27) benign(0.073) TCGA-69-7979-01 11 60699545 60699545 G A TMEM132A Silent p.L435L 0.35 TCGA-69-7979-01 11 62402389 62402389 G A GANAB Missense_Mutation p.P155L 0.17 deleterious(0) probably_damaging(1) TCGA-69-7979-01 11 62496379 62496379 G A TTC9C Missense_Mutation p.R20Q 0.36 deleterious(0.01) benign(0.207) TCGA-69-7979-01 11 63668340 63668340 C T MARK2 Missense_Mutation p.P326L 0.36 tolerated(0.12) probably_damaging(0.999) TCGA-69-7979-01 11 6415525 6415525 A T SMPD1 Silent p.I528I 0.28 TCGA-69-7979-01 11 64435962 64435962 G T NRXN2 Missense_Mutation p.L438M 0.23 deleterious(0) benign(0.189) TCGA-69-7979-01 11 64508532 64508532 G T RASGRP2 Missense_Mutation p.P87T 0.33 deleterious(0.01) probably_damaging(0.952) TCGA-69-7979-01 11 64889787 64889787 G A MRPL49 5'Flank 0.26 TCGA-69-7979-01 11 65144126 65144126 C - SLC25A45 Frame_Shift_Del p.A207Qfs*16 0.14 TCGA-69-7979-01 11 66031903 66031903 G T KLC2 Missense_Mutation p.G402C 0.17 deleterious(0.03) possibly_damaging(0.848) TCGA-69-7979-01 11 66063045 66063045 A T TMEM151A Missense_Mutation p.Y443F 0.15 deleterious(0) probably_damaging(0.986) TCGA-69-7979-01 11 66083347 66083347 G T CD248 Silent p.A384A 0.38 TCGA-69-7979-01 11 66084197 66084197 C A CD248 Missense_Mutation p.R101L 0.23 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 11 66325642 66325642 C A CTD-3074O7.2 3'Flank 0.35 TCGA-69-7979-01 11 6637571 6637571 C A TPP1 Silent p.R350R 0.26 TCGA-69-7979-01 11 6652389 6652389 A T DCHS1 Silent p.T1275T 0.21 TCGA-69-7979-01 11 67219557 67219557 C A GPR152 Silent p.V213V 0.26 TCGA-69-7979-01 11 6816116 6816116 G C OR6A2 Missense_Mutation p.T275S 0.28 tolerated(0.76) benign(0.101) TCGA-69-7979-01 11 6867151 6867151 C A OR10A5 Missense_Mutation p.P80T 0.16 deleterious(0) possibly_damaging(0.901) TCGA-69-7979-01 11 68705678 68705678 G T IGHMBP2 Missense_Mutation p.E880D 0.28 tolerated(0.29) benign(0.005) TCGA-69-7979-01 11 68705754 68705754 G T IGHMBP2 Missense_Mutation p.V906F 0.29 deleterious(0.03) probably_damaging(0.982) TCGA-69-7979-01 11 71276742 71276742 G A KRTAP5-10 Missense_Mutation p.G37S 0.21 unknown(0) TCGA-69-7979-01 11 71932634 71932634 G A FOLR2 Missense_Mutation p.G199E 0.27 deleterious(0) probably_damaging(0.93) TCGA-69-7979-01 11 721611 721611 G C EPS8L2 Missense_Mutation p.R272P 0.13 deleterious(0) probably_damaging(0.966) TCGA-69-7979-01 11 721612 721612 G T EPS8L2 Silent p.R272R 0.10 TCGA-69-7979-01 11 73589859 73589859 C T PAAF1 Missense_Mutation p.P28L 0.25 tolerated(0.66) benign(0.048) TCGA-69-7979-01 11 73809197 73809197 T A C2CD3 Missense_Mutation p.S946C 0.25 deleterious(0) probably_damaging(0.967) TCGA-69-7979-01 11 74716578 74716578 C T NEU3 Missense_Mutation p.H143Y 0.24 deleterious(0.03) benign(0.091) TCGA-69-7979-01 11 74914385 74914385 C - SLCO2B1 Frame_Shift_Del p.I622Sfs*10 0.35 TCGA-69-7979-01 11 76372411 76372411 G T LRRC32 Missense_Mutation p.R76S 0.43 deleterious(0.01) possibly_damaging(0.719) TCGA-69-7979-01 11 7960585 7960585 A T OR10A3 Silent p.T161T 0.41 TCGA-69-7979-01 11 7985059 7985059 G T NLRP10 5'UTR 0.47 TCGA-69-7979-01 11 86086208 86086208 G T CCDC81 Translation_Start_Site p.M1? 0.22 tolerated(0.06) benign(0.315) TCGA-69-7979-01 11 92087069 92087069 C G FAT3 Missense_Mutation p.I597M 0.16 probably_damaging(0.985) TCGA-69-7979-01 11 92523213 92523213 G T FAT3 Silent p.L1480L 0.25 TCGA-69-7979-01 11 92532969 92532969 C A FAT3 Missense_Mutation p.L2264I 0.24 benign(0.248) TCGA-69-7979-01 11 92573857 92573857 C G FAT3 Missense_Mutation p.H3500D 0.31 benign(0.001) TCGA-69-7979-01 11 93521248 93521248 T G MED17 Missense_Mutation p.V111G 0.10 deleterious(0.02) possibly_damaging(0.649) TCGA-69-7979-01 11 93822023 93822023 G T HEPHL1 Missense_Mutation p.R728L 0.28 tolerated(0.67) benign(0.001) TCGA-69-7979-01 11 99690432 99690432 G C CNTN5 Silent p.G71G 0.13 TCGA-69-7979-01 11 9989990 9989990 G - SBF2 Frame_Shift_Del p.R500Gfs*5 0.26 TCGA-69-7979-01 12 100904667 100904667 C T NR1H4 Missense_Mutation p.S74L 0.19 tolerated(0.22) benign(0.103) TCGA-69-7979-01 12 101477501 101477501 C T ANO4 Missense_Mutation p.R446W 0.20 deleterious(0) probably_damaging(0.986) TCGA-69-7979-01 12 101510454 101510454 T C ANO4 Intron 0.29 TCGA-69-7979-01 12 102046992 102046992 C A MYBPC1 Missense_Mutation p.P553Q 0.28 deleterious(0) probably_damaging(1) TCGA-69-7979-01 12 102301996 102302002 CGCTCTT - DRAM1 Frame_Shift_Del p.A126Wfs*47 0.22 TCGA-69-7979-01 12 104063375 104063375 C A STAB2 Silent p.G743G 0.29 TCGA-69-7979-01 12 104078815 104078815 G T STAB2 Nonsense_Mutation p.E984* 0.28 TCGA-69-7979-01 12 104331491 104331491 A T HSP90B1 Missense_Mutation p.E254D 0.26 tolerated(0.31) probably_damaging(0.996) TCGA-69-7979-01 12 104645403 104645403 G T TXNRD1 Missense_Mutation p.D64Y 0.32 deleterious(0.01) benign(0.397) TCGA-69-7979-01 12 104697914 104697914 G T EID3 Nonsense_Mutation p.E68* 0.29 TCGA-69-7979-01 12 106708156 106708156 G T TCP11L2 Missense_Mutation p.V60L 0.24 tolerated(0.23) benign(0.011) TCGA-69-7979-01 12 107075888 107075888 A G RFX4 Intron 0.11 TCGA-69-7979-01 12 10772780 10772780 C T STYK1 Missense_Mutation p.R411K 0.19 tolerated(0.63) benign(0.021) TCGA-69-7979-01 12 109311863 109311863 A G SVOP Missense_Mutation p.F371L 0.40 tolerated(0.32) benign(0.123) TCGA-69-7979-01 12 109577604 109577604 G T ACACB Missense_Mutation p.G132C 0.36 deleterious_low_confidence(0.02) benign(0.006) TCGA-69-7979-01 12 109644547 109644547 G T ACACB Missense_Mutation p.Q982H 0.25 tolerated(0.54) benign(0.156) TCGA-69-7979-01 12 109670472 109670472 A G ACACB Splice_Site p.X1334_splice 0.28 TCGA-69-7979-01 12 109717564 109717564 G T FOXN4 Missense_Mutation p.S489Y 0.47 deleterious(0.02) possibly_damaging(0.629) TCGA-69-7979-01 12 110777348 110777348 G C ATP2A2 Missense_Mutation p.R528P 0.06 deleterious(0.03) probably_damaging(0.995) TCGA-69-7979-01 12 111923603 111923603 G A ATXN2 Missense_Mutation p.H951Y 0.19 probably_damaging(0.985) TCGA-69-7979-01 12 114395783 114395783 A G RBM19 Missense_Mutation p.M215T 0.10 tolerated(0.12) benign(0.044) TCGA-69-7979-01 12 114793472 114793472 A C TBX5 Silent p.T474T 0.29 TCGA-69-7979-01 12 117175637 117175637 G A C12orf49 Silent p.F23F 0.14 TCGA-69-7979-01 12 117968769 117968769 C A KSR2 Silent p.L593L 0.19 TCGA-69-7979-01 12 120221827 120221827 C A CIT Missense_Mutation p.R477L 0.24 deleterious(0) possibly_damaging(0.532) TCGA-69-7979-01 12 120568462 120568462 G T GCN1L1 Missense_Mutation p.S2553R 0.06 benign(0.08) TCGA-69-7979-01 12 121094023 121094023 T G CABP1 Intron 0.23 TCGA-69-7979-01 12 121469249 121469249 T G OASL Missense_Mutation p.Q218P 0.14 tolerated(0.11) possibly_damaging(0.828) TCGA-69-7979-01 12 121603861 121603861 G C P2RX7 Silent p.T205T 0.26 TCGA-69-7979-01 12 122684849 122684849 G T LRRC43 Missense_Mutation p.G488V 0.23 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 12 12274345 12274345 T C LRP6 Silent p.P1519P 0.46 TCGA-69-7979-01 12 124387523 124387523 G A DNAH10 Missense_Mutation p.M3108I 0.33 benign(0) TCGA-69-7979-01 12 125612799 125612799 G T AACS Missense_Mutation p.V468L 0.08 deleterious(0.02) benign(0.273) TCGA-69-7979-01 12 129559459 129559459 G T TMEM132D Missense_Mutation p.P754H 0.24 deleterious(0) probably_damaging(1) TCGA-69-7979-01 12 131306330 131306330 C T STX2 Missense_Mutation p.E37K 0.23 deleterious(0) probably_damaging(0.993) TCGA-69-7979-01 12 132204076 132204076 G T SFSWAP Missense_Mutation p.V200L 0.30 tolerated(0.07) benign(0.277) TCGA-69-7979-01 12 14774971 14774971 C G GUCY2C Missense_Mutation p.D857H 0.32 deleterious(0) probably_damaging(1) TCGA-69-7979-01 12 15819375 15819375 T A EPS8 Missense_Mutation p.R200W 0.16 deleterious(0) probably_damaging(0.997) TCGA-69-7979-01 12 18644445 18644445 C T PIK3C2G Missense_Mutation p.H875Y 0.14 deleterious(0.02) possibly_damaging(0.616) TCGA-69-7979-01 12 25702426 25702426 C G IFLTD1 Missense_Mutation p.L48F 0.21 tolerated(0.08) benign(0.096) TCGA-69-7979-01 12 2797806 2797806 G T CACNA1C Missense_Mutation p.G2041V 0.49 tolerated_low_confidence(0.06) benign(0.02) TCGA-69-7979-01 12 29598264 29598264 T A OVCH1 Missense_Mutation p.H943L 0.34 tolerated(0.08) benign(0.055) TCGA-69-7979-01 12 29689067 29689067 G T TMTC1 Intron 0.44 TCGA-69-7979-01 12 31269326 31269326 G A RP11-551L14.1 RNA 0.51 TCGA-69-7979-01 12 3149426 3149426 G T TEAD4 Splice_Site p.X397_splice 0.38 TCGA-69-7979-01 12 31604911 31604911 C A DENND5B Missense_Mutation p.W531L 0.17 deleterious(0) probably_damaging(1) TCGA-69-7979-01 12 42863360 42863360 C A PRICKLE1 Missense_Mutation p.E92D 0.30 deleterious(0.03) benign(0.284) TCGA-69-7979-01 12 4479833 4479833 G T FGF23 Silent p.A144A 0.40 TCGA-69-7979-01 12 44917155 44917155 G T NELL2 Missense_Mutation p.D689E 0.36 deleterious(0.01) possibly_damaging(0.542) TCGA-69-7979-01 12 49445140 49445140 C A KMT2D Nonsense_Mutation p.E776* 0.34 TCGA-69-7979-01 12 51461560 51461560 C G CSRNP2 Missense_Mutation p.E202Q 0.22 tolerated(0.13) probably_damaging(0.994) TCGA-69-7979-01 12 51851217 51851217 G C SLC4A8 Missense_Mutation p.K219N 0.24 deleterious(0.04) benign(0.036) TCGA-69-7979-01 12 52448224 52448224 G T NR4A1 Missense_Mutation p.A51S 0.43 tolerated(0.83) probably_damaging(0.978) TCGA-69-7979-01 12 52818241 52818241 G T KRT75 3'UTR 0.18 TCGA-69-7979-01 12 53004396 53004396 C A KRT73 Intron 0.42 TCGA-69-7979-01 12 53008438 53008438 C A KRT73 Silent p.T248T 0.35 TCGA-69-7979-01 12 53011877 53011877 G T KRT73 Silent p.A144A 0.16 TCGA-69-7979-01 12 537935 537935 G T CCDC77 Missense_Mutation p.R138S 0.22 deleterious(0) probably_damaging(0.957) TCGA-69-7979-01 12 54348973 54348973 G C HOXC12 Missense_Mutation p.R87P 0.13 tolerated(0.15) probably_damaging(0.998) TCGA-69-7979-01 12 56030911 56030911 C G OR10P1 Missense_Mutation p.P79R 0.27 deleterious(0) probably_damaging(1) TCGA-69-7979-01 12 56091241 56091241 G A ITGA7 Missense_Mutation p.S504L 0.13 tolerated(0.29) benign(0.005) TCGA-69-7979-01 12 57423576 57423576 C A MYO1A Missense_Mutation p.G891V 0.39 tolerated(0.16) benign(0.219) TCGA-69-7979-01 12 57423577 57423577 C G MYO1A Missense_Mutation p.G891R 0.40 tolerated(0.31) benign(0.02) TCGA-69-7979-01 12 57662750 57662750 C A R3HDM2 Missense_Mutation p.Q596H 0.27 deleterious(0.04) probably_damaging(0.998) TCGA-69-7979-01 12 58019488 58019488 C A SLC26A10 Missense_Mutation p.T551N 0.26 tolerated(0.16) benign(0) TCGA-69-7979-01 12 6143944 6143944 G A VWF Silent p.A865A 0.37 TCGA-69-7979-01 12 62894640 62894640 G C MON2 Missense_Mutation p.D215H 0.31 deleterious(0) probably_damaging(1) TCGA-69-7979-01 12 657269 657269 G T B4GALNT3 Splice_Site p.X262_splice 0.42 TCGA-69-7979-01 12 66597548 66597548 A T IRAK3 Missense_Mutation p.Q64L 0.39 deleterious(0.03) possibly_damaging(0.843) TCGA-69-7979-01 12 6952162 6952162 G A GNB3 Missense_Mutation p.R42Q 0.41 tolerated(0.27) benign(0.014) TCGA-69-7979-01 12 69966000 69966000 G C FRS2 Missense_Mutation p.S172T 0.30 deleterious(0.03) probably_damaging(0.994) TCGA-69-7979-01 12 70049296 70049296 C A BEST3 Missense_Mutation p.M466I 0.36 tolerated_low_confidence(0.78) benign(0) TCGA-69-7979-01 12 70928312 70928312 G T PTPRB Nonsense_Mutation p.Y2108* 0.19 TCGA-69-7979-01 12 71003049 71003049 G C PTPRB Missense_Mutation p.S260C 0.07 tolerated_low_confidence(0.17) benign(0.007) TCGA-69-7979-01 12 71077924 71077924 G T PTPRR Missense_Mutation p.L494I 0.15 tolerated(0.1) probably_damaging(0.984) TCGA-69-7979-01 12 72024498 72024498 C G ZFC3H1 Missense_Mutation p.Q1202H 0.14 deleterious(0) probably_damaging(0.996) TCGA-69-7979-01 12 72425348 72425348 C T TPH2 Missense_Mutation p.P449L 0.24 deleterious(0) probably_damaging(1) TCGA-69-7979-01 12 75444449 75444449 G T KCNC2 Missense_Mutation p.Q446K 0.18 tolerated(1) benign(0.034) TCGA-69-7979-01 12 75444450 75444450 G T KCNC2 Silent p.P445P 0.18 TCGA-69-7979-01 12 75601332 75601332 G C KCNC2 Missense_Mutation p.D144E 0.49 deleterious(0.01) probably_damaging(0.982) TCGA-69-7979-01 12 78604278 78604278 C A NAV3 Missense_Mutation p.S2358Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 12 80714282 80714282 G T OTOGL Nonsense_Mutation p.E1286* 0.45 TCGA-69-7979-01 12 83251076 83251076 C A TMTC2 Missense_Mutation p.A124D 0.15 deleterious(0) probably_damaging(0.997) TCGA-69-7979-01 12 83358821 83358821 G C TMTC2 Missense_Mutation p.E539D 0.36 tolerated(0.31) possibly_damaging(0.627) TCGA-69-7979-01 12 8374540 8374540 C G FAM90A1 Missense_Mutation p.A425P 0.37 deleterious(0.02) benign(0.028) TCGA-69-7979-01 12 9004533 9004533 C A A2ML1 Silent p.L796L 0.18 TCGA-69-7979-01 12 98849544 98849544 G T SLC9A7P1 RNA 0.38 TCGA-69-7979-01 12 98987789 98987789 G T SLC25A3 Silent p.A11A 0.25 TCGA-69-7979-01 13 101316590 101316590 C A TMTC4 Missense_Mutation p.D74Y 0.20 deleterious(0) probably_damaging(0.99) TCGA-69-7979-01 13 101717840 101717840 T A NALCN Missense_Mutation p.K1507M 0.78 deleterious(0) probably_damaging(0.971) TCGA-69-7979-01 13 101881928 101881928 C A NALCN Missense_Mutation p.R481L 0.70 deleterious(0) probably_damaging(0.961) TCGA-69-7979-01 13 102568883 102568883 C A FGF14 Intron 0.07 TCGA-69-7979-01 13 103443473 103443473 C A KDELC1 Missense_Mutation p.M287I 0.08 tolerated(0.13) benign(0.093) TCGA-69-7979-01 13 109777688 109777688 A C MYO16 Missense_Mutation p.Q1233P 0.83 tolerated(0.53) benign(0) TCGA-69-7979-01 13 110866335 110866335 C T COL4A1 Missense_Mutation p.G58S 0.50 unknown(0) TCGA-69-7979-01 13 111277566 111277566 C T CARKD Silent p.A109A 0.02 TCGA-69-7979-01 13 113777134 113777134 C G F10 5'UTR 0.03 TCGA-69-7979-01 13 113852580 113852580 T A PCID2 Splice_Site p.X43_splice 0.04 TCGA-69-7979-01 13 114286059 114286059 G T TFDP1 Missense_Mutation p.G103V 0.23 tolerated(0.07) probably_damaging(0.955) TCGA-69-7979-01 13 114322393 114322393 G A GRK1 Missense_Mutation p.G231D 0.30 deleterious(0) probably_damaging(1) TCGA-69-7979-01 13 20025312 20025312 A T TPTE2 Missense_Mutation p.N265K 0.12 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 13 26620613 26620613 G A SHISA2 3'UTR 0.24 TCGA-69-7979-01 13 27333319 27333319 G T GPR12 Missense_Mutation p.L216I 0.24 tolerated(0.05) probably_damaging(0.999) TCGA-69-7979-01 13 28588651 28588651 G T FLT3 Silent p.R933R 0.10 TCGA-69-7979-01 13 28626686 28626686 C A FLT3 Nonsense_Mutation p.E204* 0.25 TCGA-69-7979-01 13 29600683 29600683 G T MTUS2 Missense_Mutation p.E626D 0.16 tolerated(0.42) possibly_damaging(0.841) TCGA-69-7979-01 13 38162064 38162064 A G POSTN Silent p.S167S 0.23 TCGA-69-7979-01 13 43180710 43180710 G T TNFSF11 Nonsense_Mutation p.G204* 0.29 TCGA-69-7979-01 13 43180817 43180817 G T TNFSF11 Missense_Mutation p.M239I 0.23 deleterious(0.02) possibly_damaging(0.618) TCGA-69-7979-01 13 45601953 45601953 C T GPALPP1 Missense_Mutation p.H280Y 0.35 deleterious(0) probably_damaging(0.939) TCGA-69-7979-01 13 46357687 46357687 C A SIAH3 Missense_Mutation p.W214L 0.17 deleterious(0.03) possibly_damaging(0.897) TCGA-69-7979-01 13 46721233 46721233 C A LCP1 Missense_Mutation p.K328N 0.35 tolerated(0.28) benign(0.013) TCGA-69-7979-01 13 50204623 50204623 C A ARL11 Missense_Mutation p.Q14K 0.46 tolerated(0.08) benign(0.113) TCGA-69-7979-01 13 52971655 52971655 C G THSD1 Missense_Mutation p.V245L 0.33 tolerated(0.32) benign(0.006) TCGA-69-7979-01 13 53211499 53211499 C T HNRNPA1L2 5'UTR 0.25 TCGA-69-7979-01 13 58299169 58299169 C A PCDH17 Missense_Mutation p.T1074N 0.21 tolerated_low_confidence(0.16) benign(0.107) TCGA-69-7979-01 13 70314605 70314605 G T KLHL1 Missense_Mutation p.P575T 0.09 deleterious(0) probably_damaging(0.995) TCGA-69-7979-01 13 72255957 72255957 G T DACH1 Missense_Mutation p.L314I 0.19 probably_damaging(0.996) TCGA-69-7979-01 13 75936222 75936222 C A TBC1D4 Silent p.A340A 0.18 TCGA-69-7979-01 13 76430679 76430679 C T LMO7 Nonsense_Mutation p.Q1334* 0.17 TCGA-69-7979-01 13 77655991 77655991 C A MYCBP2 Missense_Mutation p.G3687V 0.09 probably_damaging(0.998) TCGA-69-7979-01 13 78173864 78173864 A T SCEL Missense_Mutation p.T300S 0.65 tolerated_low_confidence(0.06) benign(0.281) TCGA-69-7979-01 13 78475251 78475251 C A EDNRB Missense_Mutation p.C388F 0.14 tolerated(0.72) benign(0.093) TCGA-69-7979-01 13 79190695 79190695 T A RNF219 Missense_Mutation p.S401C 0.24 deleterious(0) possibly_damaging(0.497) TCGA-69-7979-01 13 88328942 88328942 G T SLITRK5 Silent p.T433T 0.13 TCGA-69-7979-01 13 88330388 88330388 G A SLITRK5 Silent p.V915V 0.23 TCGA-69-7979-01 13 92380883 92380883 C A GPC5 Missense_Mutation p.T373K 0.18 tolerated(0.47) benign(0.063) TCGA-69-7979-01 13 95121177 95121177 G T DCT Missense_Mutation p.Q140K 0.06 tolerated(0.68) possibly_damaging(0.877) TCGA-69-7979-01 13 95364140 95364140 C A SOX21 Missense_Mutation p.R55L 0.72 deleterious(0) probably_damaging(0.994) TCGA-69-7979-01 13 96086270 96086270 C A CLDN10 Nonsense_Mutation p.C61* 0.08 TCGA-69-7979-01 14 102323077 102323077 G C PPP2R5C Missense_Mutation p.C81S 0.39 tolerated(0.18) benign(0.125) TCGA-69-7979-01 14 102481464 102481464 A T DYNC1H1 Missense_Mutation p.Q2346L 0.11 possibly_damaging(0.9) TCGA-69-7979-01 14 103568723 103568723 G T EXOC3L4 Missense_Mutation p.E221D 0.44 deleterious(0) probably_damaging(1) TCGA-69-7979-01 14 104624222 104624222 C A KIF26A Missense_Mutation p.T289N 0.36 tolerated(0.08) benign(0.073) TCGA-69-7979-01 14 105410338 105410338 G C AHNAK2 Missense_Mutation p.A3817G 0.13 probably_damaging(0.986) TCGA-69-7979-01 14 105411103 105411103 G A AHNAK2 Missense_Mutation p.P3562L 0.07 possibly_damaging(0.851) TCGA-69-7979-01 14 105518004 105518004 C T GPR132 Missense_Mutation p.R157K 0.29 tolerated(1) benign(0.02) TCGA-69-7979-01 14 105941187 105941187 G T CRIP2 Intron 0.21 TCGA-69-7979-01 14 106829721 106829721 C T IGHV4-34 Missense_Mutation p.G81E 0.11 deleterious(0.01) benign(0.105) TCGA-69-7979-01 14 106829854 106829854 G T IGHV4-34 Missense_Mutation p.L37M 0.48 deleterious(0.02) probably_damaging(0.936) TCGA-69-7979-01 14 106877749 106877749 C A IGHV4-39 Missense_Mutation p.S82I 0.32 deleterious(0.03) benign(0.012) TCGA-69-7979-01 14 107078791 107078791 C A IGHV1-58 Missense_Mutation p.R6S 0.28 benign(0.103) TCGA-69-7979-01 14 107199084 107199084 G T IGHV3-72 Missense_Mutation p.R69S 0.37 tolerated_low_confidence(0.4) benign(0.154) TCGA-69-7979-01 14 20248975 20248975 G T OR4M1 Missense_Mutation p.R165L 0.17 tolerated(0.12) benign(0.319) TCGA-69-7979-01 14 20249159 20249159 G A OR4M1 Silent p.K226K 0.17 TCGA-69-7979-01 14 20502335 20502335 G T OR4K13 Missense_Mutation p.L195I 0.25 tolerated(0.11) benign(0.169) TCGA-69-7979-01 14 20692601 20692601 T A OR11H6 Missense_Mutation p.C245S 0.20 deleterious(0) benign(0.004) TCGA-69-7979-01 14 20711476 20711476 C A OR11H4 Missense_Mutation p.L176I 0.39 deleterious(0.01) probably_damaging(1) TCGA-69-7979-01 14 21360276 21360276 G T RNASE3 Missense_Mutation p.R144L 0.32 tolerated(0.1) probably_damaging(0.919) TCGA-69-7979-01 14 21623659 21623659 C A OR5AU1 Missense_Mutation p.A176S 0.15 deleterious(0) probably_damaging(0.998) TCGA-69-7979-01 14 21796581 21796581 A T RPGRIP1 Splice_Site p.X966_splice 0.30 TCGA-69-7979-01 14 21860107 21860107 T A CHD8 Splice_Site p.X2258_splice 0.16 TCGA-69-7979-01 14 22217831 22217831 G A TRAV5 Missense_Mutation p.G61E 0.53 deleterious(0) probably_damaging(0.996) TCGA-69-7979-01 14 22237167 22237167 G T TRAV6 Missense_Mutation p.G82C 0.20 deleterious(0) probably_damaging(1) TCGA-69-7979-01 14 22434098 22434098 G T TRAV12-3 Missense_Mutation p.A51S 0.52 tolerated(0.11) benign(0.198) TCGA-69-7979-01 14 23395765 23395765 C G PRMT5 Splice_Site p.X188_splice 0.17 TCGA-69-7979-01 14 23855701 23855701 C A MYH6 Silent p.R1594R 0.29 TCGA-69-7979-01 14 23872558 23872558 C A MYH6 Silent p.L299L 0.30 TCGA-69-7979-01 14 23884426 23884426 C A MYH7 Silent p.L1779L 0.22 TCGA-69-7979-01 14 23884428 23884428 G A MYH7 Silent p.L1779L 0.22 TCGA-69-7979-01 14 24028973 24028973 C T AP1G2 Silent p.V781V 0.11 TCGA-69-7979-01 14 24543413 24543413 C A CPNE6 Intron 0.28 TCGA-69-7979-01 14 25042869 25042869 G T CTSG Missense_Mutation p.L248M 0.27 tolerated(0.25) benign(0.135) TCGA-69-7979-01 14 25101178 25101178 C A GZMB Missense_Mutation p.E162D 0.27 deleterious(0.05) possibly_damaging(0.775) TCGA-69-7979-01 14 26917568 26917568 C G NOVA1 Missense_Mutation p.S374T 0.22 tolerated(0.49) benign(0.003) TCGA-69-7979-01 14 31077156 31077156 G - G2E3 Frame_Shift_Del p.G461Vfs*26 0.23 TCGA-69-7979-01 14 31348034 31348034 C T COCH Missense_Mutation p.S86L 0.16 deleterious(0.01) benign(0.081) TCGA-69-7979-01 14 31381014 31381014 C A STRN3 Missense_Mutation p.V523L 0.27 tolerated(0.09) probably_damaging(0.994) TCGA-69-7979-01 14 38679753 38679753 C A SSTR1 Silent p.R387R 0.67 TCGA-69-7979-01 14 45414261 45414261 T A KLHL28 Nonsense_Mutation p.K291* 0.12 TCGA-69-7979-01 14 47314974 47314974 G T MDGA2 Missense_Mutation p.T995N 0.33 tolerated_low_confidence(0.52) benign(0.017) TCGA-69-7979-01 14 50583248 50583248 G A VCPKMT Missense_Mutation p.S8L 0.61 tolerated_low_confidence(0.26) benign(0.006) TCGA-69-7979-01 14 52169245 52169245 G - FRMD6 Frame_Shift_Del p.P105Lfs*3 0.22 TCGA-69-7979-01 14 52520599 52520599 C A NID2 Missense_Mutation p.G376V 0.48 tolerated(0.58) benign(0) TCGA-69-7979-01 14 53066848 53066848 G T GPR137C Missense_Mutation p.G169V 0.33 tolerated(0.69) probably_damaging(0.998) TCGA-69-7979-01 14 55818034 55818034 G A FBXO34 Missense_Mutation p.R309H 0.14 deleterious(0.04) benign(0.14) TCGA-69-7979-01 14 55881151 55881151 G T TBPL2 Silent p.I358I 0.09 TCGA-69-7979-01 14 56083266 56083266 G A KTN1 Missense_Mutation p.M185I 0.14 tolerated(0.47) benign(0) TCGA-69-7979-01 14 58038628 58038628 G T SLC35F4 Missense_Mutation p.T342K 0.19 tolerated(0.11) possibly_damaging(0.907) TCGA-69-7979-01 14 59953495 59953495 C A JKAMP Silent p.G23G 0.36 TCGA-69-7979-01 14 61486288 61486288 G A SLC38A6 Silent p.Q131Q 0.10 TCGA-69-7979-01 14 65560456 65560456 C A MAX Silent p.R47R 0.23 TCGA-69-7979-01 14 67940320 67940320 C A TMEM229B Missense_Mutation p.Q107H 0.36 tolerated(0.17) benign(0.003) TCGA-69-7979-01 14 68193818 68193818 G T RDH12 Missense_Mutation p.S190I 0.25 tolerated(0.39) benign(0.209) TCGA-69-7979-01 14 70477558 70477558 G T SMOC1 Missense_Mutation p.C251F 0.32 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 14 70480189 70480189 G C SMOC1 Missense_Mutation p.A343P 0.13 deleterious(0.01) possibly_damaging(0.882) TCGA-69-7979-01 14 72176379 72176379 A T SIPA1L1 Silent p.T1423T 0.27 TCGA-69-7979-01 14 72943468 72943468 G T RGS6 Nonsense_Mutation p.E238* 0.31 TCGA-69-7979-01 14 73572596 73572596 G T RBM25 Missense_Mutation p.R395L 0.18 unknown(0) TCGA-69-7979-01 14 73578958 73578958 G C RBM25 Missense_Mutation p.K797N 0.07 unknown(0) TCGA-69-7979-01 14 75602490 75602490 T C TMED10 Missense_Mutation p.R171G 0.20 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 14 80963830 80963830 C A CEP128 Missense_Mutation p.G1093W 0.29 deleterious_low_confidence(0.01) benign(0.103) TCGA-69-7979-01 14 81862427 81862427 C A STON2 Missense_Mutation p.D62Y 0.39 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-69-7979-01 14 90528647 90528647 G A KCNK13 Missense_Mutation p.G33D 0.33 deleterious(0.03) benign(0.122) TCGA-69-7979-01 14 92621558 92621558 G A CPSF2 Missense_Mutation p.G445S 0.41 tolerated(0.75) benign(0) TCGA-69-7979-01 14 92958090 92958090 T A SLC24A4 Missense_Mutation p.L540Q 0.29 deleterious(0) probably_damaging(0.995) TCGA-69-7979-01 14 94780496 94780496 C A SERPINA6 Missense_Mutation p.A164S 0.46 tolerated(0.21) benign(0.088) TCGA-69-7979-01 14 94848956 94848956 C A SERPINA1 Missense_Mutation p.A207S 0.32 deleterious(0.03) possibly_damaging(0.553) TCGA-69-7979-01 14 94935588 94935588 A G SERPINA9 Missense_Mutation p.L215P 0.41 tolerated(0.29) possibly_damaging(0.563) TCGA-69-7979-01 14 96157121 96157121 C T TCL1B Missense_Mutation p.R71W 0.20 deleterious(0.01) possibly_damaging(0.828) TCGA-69-7979-01 15 101552290 101552290 G T LRRK1 Missense_Mutation p.K453N 0.26 deleterious(0.01) benign(0.213) TCGA-69-7979-01 15 101717884 101717884 C A CHSY1 Silent p.V706V 0.42 TCGA-69-7979-01 15 22472967 22472967 G T IGHV4OR15-8 Missense_Mutation p.L102M 0.04 deleterious(0.02) possibly_damaging(0.895) TCGA-69-7979-01 15 22933657 22933657 G T CYFIP1 Missense_Mutation p.Q222H 0.51 tolerated(0.06) benign(0.005) TCGA-69-7979-01 15 23445346 23445346 C A AC100757.1 3'Flank 0.47 TCGA-69-7979-01 15 23932360 23932360 G C NDN Nonsense_Mutation p.S2* 0.42 TCGA-69-7979-01 15 24923443 24923443 C A NPAP1 Missense_Mutation p.A810D 0.53 tolerated_low_confidence(0.06) possibly_damaging(0.554) TCGA-69-7979-01 15 25324282 25324282 G T SNORD116-13 RNA 0.59 TCGA-69-7979-01 15 25438349 25438349 G T SNORD115-11 3'Flank 0.24 TCGA-69-7979-01 15 25468328 25468328 C A SNORD115-27 3'Flank 0.31 TCGA-69-7979-01 15 25940069 25940069 G A ATP10A Silent p.A995A 0.23 TCGA-69-7979-01 15 27126036 27126036 G T GABRA5 Missense_Mutation p.D44Y 0.23 deleterious(0) possibly_damaging(0.907) TCGA-69-7979-01 15 28000529 28000529 G T OCA2 3'UTR 0.30 TCGA-69-7979-01 15 28096594 28096594 C A OCA2 Missense_Mutation p.D758Y 0.27 deleterious(0) probably_damaging(0.993) TCGA-69-7979-01 15 28513632 28513632 C A HERC2 Missense_Mutation p.R526L 0.44 possibly_damaging(0.855) TCGA-69-7979-01 15 31294125 31294125 C A TRPM1 Missense_Mutation p.G1610V 0.25 deleterious_low_confidence(0.04) benign(0.33) TCGA-69-7979-01 15 34640599 34640599 G T NUTM1 Missense_Mutation p.G149V 0.25 tolerated(0.09) possibly_damaging(0.768) TCGA-69-7979-01 15 34649759 34649759 C A NUTM1 3'UTR 0.24 TCGA-69-7979-01 15 35044798 35044798 C A GJD2 Missense_Mutation p.A283S 0.58 tolerated(0.22) possibly_damaging(0.693) TCGA-69-7979-01 15 41819196 41819196 C A RPAP1 Missense_Mutation p.G606V 0.63 tolerated(0.46) benign(0.007) TCGA-69-7979-01 15 43622382 43622382 C A LCMT2 Silent p.A102A 0.21 TCGA-69-7979-01 15 43813880 43813880 C A MAP1A Missense_Mutation p.S70Y 0.35 probably_damaging(0.999) TCGA-69-7979-01 15 44116690 44116690 T A MFAP1 Missense_Mutation p.K26N 0.19 deleterious(0) benign(0.403) TCGA-69-7979-01 15 48053394 48053394 T G SEMA6D Missense_Mutation p.C108G 0.17 deleterious(0) probably_damaging(1) TCGA-69-7979-01 15 51856388 51856388 T A DMXL2 Missense_Mutation p.E145V 0.34 tolerated(0.12) probably_damaging(0.999) TCGA-69-7979-01 15 52442101 52442101 C A GNB5 Missense_Mutation p.D133Y 0.27 deleterious(0) probably_damaging(1) TCGA-69-7979-01 15 52689527 52689527 G A MYO5A Missense_Mutation p.T397I 0.24 tolerated(0.31) benign(0.006) TCGA-69-7979-01 15 55919220 55919220 G TA PRTG Frame_Shift_Ins p.R972Tfs*3 0.32 TCGA-69-7979-01 15 60803461 60803461 C A RORA Missense_Mutation p.G295C 0.36 tolerated(0.05) probably_damaging(0.912) TCGA-69-7979-01 15 68124994 68124994 G T SKOR1 Missense_Mutation p.M807I 0.60 deleterious_low_confidence(0.03) benign(0.043) TCGA-69-7979-01 15 69222931 69222931 G T SPESP1 5'UTR 0.67 TCGA-69-7979-01 15 69696146 69696147 - A PAQR5 Frame_Shift_Ins p.E329Rfs*35 0.10 TCGA-69-7979-01 15 72227692 72227692 C A MYO9A Nonsense_Mutation p.G838* 0.30 TCGA-69-7979-01 15 72511302 72511302 C A PKM Missense_Mutation p.G46V 0.44 deleterious(0) probably_damaging(0.95) TCGA-69-7979-01 15 72958129 72958129 C A GOLGA6B Missense_Mutation p.S568Y 0.12 tolerated(0.85) possibly_damaging(0.781) TCGA-69-7979-01 15 74363310 74363310 G A GOLGA6A Missense_Mutation p.H675Y 0.33 tolerated(0.41) benign(0.042) TCGA-69-7979-01 15 75131080 75131080 G A ULK3 Nonsense_Mutation p.Q336* 0.79 TCGA-69-7979-01 15 75968663 75968663 G T CSPG4 Missense_Mutation p.T2066N 0.21 tolerated(0.38) benign(0.004) TCGA-69-7979-01 15 75979993 75979993 G A CSPG4 Missense_Mutation p.P1138L 0.21 tolerated(0.32) possibly_damaging(0.808) TCGA-69-7979-01 15 78474871 78474871 A T ACSBG1 Nonsense_Mutation p.C277* 0.36 TCGA-69-7979-01 15 78635919 78635919 T A CRABP1 Missense_Mutation p.W110R 0.25 deleterious(0) probably_damaging(1) TCGA-69-7979-01 15 79749799 79749799 C G KIAA1024 Missense_Mutation p.S437C 0.22 tolerated(0.06) benign(0.285) TCGA-69-7979-01 15 80806716 80806716 A G ARNT2 Missense_Mutation p.T283A 0.30 deleterious(0) benign(0.217) TCGA-69-7979-01 15 81517912 81517912 C A IL16 Missense_Mutation p.H58N 0.41 tolerated_low_confidence(1) possibly_damaging(0.611) TCGA-69-7979-01 15 85345453 85345453 G A ZNF592 Missense_Mutation p.M1211I 0.46 tolerated_low_confidence(0.29) benign(0.006) TCGA-69-7979-01 15 89403616 89403616 G T ACAN Nonsense_Mutation p.G2298* 0.45 TCGA-69-7979-01 15 89415265 89415265 G T ACAN Silent p.L2379L 0.10 TCGA-69-7979-01 16 11038617 11038617 A T CLEC16A Nonsense_Mutation p.K15* 0.14 TCGA-69-7979-01 16 142603 142603 A G NPRL3 Silent p.A384A 0.12 TCGA-69-7979-01 16 17353050 17353050 C A XYLT1 Silent p.P236P 0.10 TCGA-69-7979-01 16 18896878 18896878 G A SMG1 Silent p.F311F 0.17 TCGA-69-7979-01 16 1997014 1997014 G T RPL3L Missense_Mutation p.H258Q 0.34 deleterious(0) probably_damaging(0.938) TCGA-69-7979-01 16 20352475 20352475 G A UMOD Silent p.N505N 0.22 TCGA-69-7979-01 16 20359587 20359587 C A UMOD Missense_Mutation p.G311C 0.10 deleterious(0) probably_damaging(1) TCGA-69-7979-01 16 20548507 20548507 A T ACSM2B 3'UTR 0.23 TCGA-69-7979-01 16 21181907 21181907 G T TMEM159 Silent p.L82L 0.52 TCGA-69-7979-01 16 21698821 21698821 A T OTOA Missense_Mutation p.T163S 0.29 deleterious(0.02) possibly_damaging(0.652) TCGA-69-7979-01 16 2285348 2285348 C T E4F1 Silent p.T710T 0.25 TCGA-69-7979-01 16 22926915 22926915 T A HS3ST2 3'UTR 0.40 TCGA-69-7979-01 16 24881295 24881295 C A SLC5A11 Missense_Mutation p.T94K 0.35 tolerated(0.08) benign(0.006) TCGA-69-7979-01 16 28911984 28911984 A T ATP2A1 Missense_Mutation p.D616V 0.33 tolerated(0.25) benign(0.206) TCGA-69-7979-01 16 29826081 29826081 G T PRRT2 3'Flank 0.29 TCGA-69-7979-01 16 29998181 29998181 G T TAOK2 Missense_Mutation p.G863V 0.34 deleterious_low_confidence(0) benign(0.081) TCGA-69-7979-01 16 30365353 30365353 C G CD2BP2 Missense_Mutation p.E82Q 0.33 tolerated(0.05) benign(0.198) TCGA-69-7979-01 16 31367247 31367247 C A ITGAX Missense_Mutation p.T24K 0.33 deleterious(0) benign(0.377) TCGA-69-7979-01 16 31384650 31384651 - A ITGAX Frame_Shift_Ins p.T817Nfs*33 0.20 TCGA-69-7979-01 16 32893883 32893883 C A RP11-989E6.3 5'Flank 0.20 TCGA-69-7979-01 16 354413 354413 C A AXIN1 Missense_Mutation p.R382L 0.53 tolerated(0.11) possibly_damaging(0.483) TCGA-69-7979-01 16 48234196 48234196 G A ABCC11 Silent p.H691H 0.46 TCGA-69-7979-01 16 50744679 50744679 G A NOD2 Missense_Mutation p.G286D 0.52 tolerated(0.06) benign(0.033) TCGA-69-7979-01 16 51171020 51171020 G A SALL1 3'UTR 0.51 TCGA-69-7979-01 16 51173792 51173792 G T SALL1 Missense_Mutation p.L781M 0.53 deleterious(0) probably_damaging(1) TCGA-69-7979-01 16 55909090 55909090 G T CES5A Intron 0.47 TCGA-69-7979-01 16 57062297 57062297 G T NLRC5 Missense_Mutation p.S748I 0.53 deleterious(0) possibly_damaging(0.635) TCGA-69-7979-01 16 58071439 58071439 G T MMP15 Missense_Mutation p.A76S 0.61 tolerated(0.09) possibly_damaging(0.495) TCGA-69-7979-01 16 66943246 66943246 G T CDH16 Silent p.R772R 0.63 TCGA-69-7979-01 16 67214273 67214273 C A KIAA0895L Nonsense_Mutation p.E81* 0.61 TCGA-69-7979-01 16 71319742 71319742 C T CMTR2 Missense_Mutation p.E28K 0.12 tolerated(0.7) benign(0.009) TCGA-69-7979-01 16 7382931 7382931 G T RBFOX1 5'UTR 0.30 TCGA-69-7979-01 16 74387776 74387776 C A RP11-252A24.2 RNA 0.12 TCGA-69-7979-01 16 76592507 76592507 C G CNTNAP4 Missense_Mutation p.A1212G 0.12 tolerated(0.39) benign(0.354) TCGA-69-7979-01 16 7760702 7760702 G T RBFOX1 Missense_Mutation p.Q404H 0.34 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-69-7979-01 16 77859152 77859152 C A VAT1L Missense_Mutation p.R125S 0.38 deleterious(0) probably_damaging(0.964) TCGA-69-7979-01 16 81228566 81228566 G T PKD1L2 Missense_Mutation p.N64K 0.63 tolerated(0.16) benign(0.117) TCGA-69-7979-01 16 81965211 81965211 T C PLCG2 Silent p.F897F 0.41 TCGA-69-7979-01 16 85952132 85952132 C G IRF8 Silent p.P237P 0.23 TCGA-69-7979-01 16 86612745 86612745 G T FOXL1 Missense_Mutation p.R139L 0.57 deleterious(0) probably_damaging(0.982) TCGA-69-7979-01 16 88876515 88876515 C G APRT Missense_Mutation p.Q121H 0.54 deleterious(0.01) probably_damaging(0.985) TCGA-69-7979-01 16 89785558 89785558 T G VPS9D1 Intron 0.22 TCGA-69-7979-01 17 10418197 10418197 G T MYH1 Missense_Mutation p.S174Y 0.36 deleterious(0) possibly_damaging(0.76) TCGA-69-7979-01 17 11659961 11659961 G C DNAH9 Missense_Mutation p.R2272P 0.22 possibly_damaging(0.88) TCGA-69-7979-01 17 12921148 12921148 G C ELAC2 Missense_Mutation p.H39Q 0.33 deleterious(0.04) possibly_damaging(0.791) TCGA-69-7979-01 17 18022482 18022482 G T MYO15A Missense_Mutation p.R123L 0.26 probably_damaging(0.979) TCGA-69-7979-01 17 18967247 18967247 G A SNORD3B-2 RNA 0.39 TCGA-69-7979-01 17 19460950 19460950 A T SLC47A1 Intron 0.19 TCGA-69-7979-01 17 20407334 20407334 T G RP11-434D2.7 3'Flank 0.12 TCGA-69-7979-01 17 21217477 21217477 T A MAP2K3 Missense_Mutation p.L327M 0.30 tolerated(0.17) benign(0.025) TCGA-69-7979-01 17 21319631 21319631 G T KCNJ12 Missense_Mutation p.R326L 0.04 deleterious(0.01) probably_damaging(1) TCGA-69-7979-01 17 25909765 25909765 G T KSR1 Missense_Mutation p.S68I 0.58 tolerated(0.15) benign(0.01) TCGA-69-7979-01 17 27251142 27251142 G A PHF12 Missense_Mutation p.P167L 0.22 deleterious(0) probably_damaging(0.938) TCGA-69-7979-01 17 29556374 29556374 G T NF1 Missense_Mutation p.R914L 0.26 tolerated(0.12) probably_damaging(0.968) TCGA-69-7979-01 17 3195679 3195679 C T OR3A1 Silent p.L66L 0.33 TCGA-69-7979-01 17 33278998 33278998 C G CCT6B Missense_Mutation p.E195D 0.12 tolerated(0.15) benign(0.02) TCGA-69-7979-01 17 33281456 33281456 C A CCT6B Missense_Mutation p.V167F 0.36 tolerated(0.08) benign(0.041) TCGA-69-7979-01 17 3336696 3336696 G T OR1E2 Missense_Mutation p.P147H 0.64 tolerated(0.09) benign(0.114) TCGA-69-7979-01 17 34136510 34136510 C T TAF15 5'UTR 0.32 TCGA-69-7979-01 17 3627256 3627256 G T GSG2 Silent p.G9G 0.12 TCGA-69-7979-01 17 36868120 36868120 C T MLLT6 Silent p.S191S 0.21 TCGA-69-7979-01 17 36868121 36868121 G T MLLT6 Missense_Mutation p.G192W 0.21 deleterious(0.01) unknown(0) TCGA-69-7979-01 17 37824839 37824839 C A PNMT Silent p.R37R 0.39 TCGA-69-7979-01 17 3856723 3856723 C G ATP2A3 Missense_Mutation p.G46A 0.23 tolerated(0.08) benign(0.44) TCGA-69-7979-01 17 39394523 39394523 C A KRTAP9-8 Missense_Mutation p.P74T 0.27 tolerated(0.79) unknown(0) TCGA-69-7979-01 17 39680183 39680183 G A KRT19 Nonsense_Mutation p.Q339* 0.30 TCGA-69-7979-01 17 40011242 40011242 T A KLHL11 Missense_Mutation p.R293W 0.38 deleterious(0) probably_damaging(1) TCGA-69-7979-01 17 41003387 41003387 C A AOC3 Silent p.L9L 0.37 TCGA-69-7979-01 17 42336692 42336692 G T SLC4A1 Missense_Mutation p.Q239K 0.53 tolerated(0.4) benign(0) TCGA-69-7979-01 17 43923727 43923727 G A SPPL2C Silent p.L485L 0.33 TCGA-69-7979-01 17 48275138 48275138 C A COL1A1 Missense_Mutation p.M217I 0.33 unknown(0) TCGA-69-7979-01 17 4883439 4883439 C T CAMTA2 Missense_Mutation p.G416E 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-69-7979-01 17 48913292 48913292 C T WFIKKN2 5'UTR 0.22 TCGA-69-7979-01 17 5071268 5071268 G A USP6 Silent p.A1026A 0.20 TCGA-69-7979-01 17 53345303 53345303 C A HLF Missense_Mutation p.Q103K 0.71 tolerated(0.35) benign(0.08) TCGA-69-7979-01 17 56247174 56247174 C - OR4D2 Frame_Shift_Del p.Q54Sfs*16 0.45 TCGA-69-7979-01 17 60464708 60464708 G T EFCAB3 Missense_Mutation p.D80Y 0.13 deleterious(0.02) benign(0.103) TCGA-69-7979-01 17 60743850 60743850 G T MRC2 Missense_Mutation p.Q243H 0.32 tolerated(0.61) benign(0.013) TCGA-69-7979-01 17 63200343 63200343 C A RGS9 Missense_Mutation p.T376K 0.33 deleterious(0) probably_damaging(0.998) TCGA-69-7979-01 17 64881120 64881120 G T CACNG5 Silent p.V197V 0.72 TCGA-69-7979-01 17 6683346 6683346 T A FBXO39 Silent p.A53A 0.56 TCGA-69-7979-01 17 66985243 66985243 C A ABCA9 Silent p.L1324L 0.15 TCGA-69-7979-01 17 67152030 67152030 C A ABCA10 Silent p.P1164P 0.62 TCGA-69-7979-01 17 72368040 72368040 G T GPR142 Silent p.V230V 0.36 TCGA-69-7979-01 17 73279629 73279629 C A SLC25A19 Missense_Mutation p.V112L 0.36 tolerated(0.42) benign(0) TCGA-69-7979-01 17 7329792 7329792 C T C17orf74 Missense_Mutation p.P161L 0.18 tolerated(1) probably_damaging(0.958) TCGA-69-7979-01 17 75484933 75484933 G T SEPT9 Missense_Mutation p.A417S 0.37 deleterious(0) possibly_damaging(0.545) TCGA-69-7979-01 17 7578506 7578523 GGCAGGTCTTGGCCAGTT - TP53 In_Frame_Del p.Q136_C141del 0.58 TCGA-69-7979-01 17 7689993 7689993 A T DNAH2 Missense_Mutation p.T2152S 0.33 benign(0.001) TCGA-69-7979-01 17 77082261 77082261 G T ENGASE Missense_Mutation p.G688W 0.75 deleterious(0) probably_damaging(1) TCGA-69-7979-01 17 7802665 7802665 A C CHD3 Missense_Mutation p.H842P 0.69 possibly_damaging(0.537) TCGA-69-7979-01 17 7983633 7983633 C A AC129492.6 Missense_Mutation p.A105D 0.65 possibly_damaging(0.826) TCGA-69-7979-01 17 8784067 8784067 G T PIK3R5 Missense_Mutation p.S844R 0.34 tolerated(0.09) benign(0.11) TCGA-69-7979-01 18 10526062 10526062 G T NAPG 5'UTR 0.42 TCGA-69-7979-01 18 10680288 10680288 C A PIEZO2 Missense_Mutation p.W2507C 0.41 deleterious(0) probably_damaging(1) TCGA-69-7979-01 18 12982536 12982536 G T SEH1L Missense_Mutation p.G261C 0.43 deleterious(0) benign(0.047) TCGA-69-7979-01 18 13645452 13645452 A T LDLRAD4 Silent p.A239A 0.14 TCGA-69-7979-01 18 14479237 14479237 C A CXADRP3 RNA 0.43 TCGA-69-7979-01 18 14533098 14533098 C A POTEC Missense_Mutation p.Q339H 0.30 tolerated(0.55) probably_damaging(0.986) TCGA-69-7979-01 18 19239230 19239230 C T ABHD3 Missense_Mutation p.G248D 0.07 tolerated(0.07) probably_damaging(0.963) TCGA-69-7979-01 18 31326583 31326583 C A ASXL3 3'UTR 0.30 TCGA-69-7979-01 18 31803261 31803261 C A NOL4 5'UTR 0.23 TCGA-69-7979-01 18 32374067 32374067 C G DTNA Missense_Mutation p.P72R 0.38 tolerated(0.35) possibly_damaging(0.516) TCGA-69-7979-01 18 335055 335055 A T COLEC12 Silent p.S501S 0.16 TCGA-69-7979-01 18 335057 335057 A G COLEC12 Missense_Mutation p.S501P 0.16 tolerated(0.37) unknown(0) TCGA-69-7979-01 18 42531105 42531105 G A SETBP1 Silent p.T600T 0.57 TCGA-69-7979-01 18 42532771 42532771 C A SETBP1 Missense_Mutation p.H1156N 0.50 deleterious(0) benign(0.264) TCGA-69-7979-01 18 46383977 46383977 G A CTIF Missense_Mutation p.V518M 0.21 deleterious(0.01) benign(0.339) TCGA-69-7979-01 18 52544851 52544851 T A RAB27B Missense_Mutation p.L12H 0.48 deleterious(0) probably_damaging(1) TCGA-69-7979-01 18 5291963 5291963 G A ZBTB14 Missense_Mutation p.R82C 0.20 tolerated(0.12) probably_damaging(0.998) TCGA-69-7979-01 18 56807241 56807241 G C SEC11C Missense_Mutation p.D21H 0.21 tolerated(0.08) possibly_damaging(0.77) TCGA-69-7979-01 18 61323257 61323257 C T SERPINB3 Nonsense_Mutation p.W269* 0.45 TCGA-69-7979-01 18 61323258 61323258 C T SERPINB3 Nonsense_Mutation p.W269* 0.45 TCGA-69-7979-01 18 63481754 63481754 C G CDH7 Missense_Mutation p.A180G 0.17 tolerated(0.06) probably_damaging(0.931) TCGA-69-7979-01 18 63547939 63547939 G T CDH7 Missense_Mutation p.G723C 0.25 tolerated(0.44) benign(0) TCGA-69-7979-01 18 67563020 67563020 G A CD226 Missense_Mutation p.S215L 0.22 deleterious(0) probably_damaging(0.946) TCGA-69-7979-01 18 67697286 67697286 C G RTTN Missense_Mutation p.D1903H 0.20 deleterious(0) probably_damaging(0.982) TCGA-69-7979-01 18 6950865 6950865 G T LAMA1 Silent p.G2771G 0.54 TCGA-69-7979-01 18 8825006 8825006 C T SOGA2 Silent p.D1166D 0.10 TCGA-69-7979-01 19 1005248 1005249 CG A GRIN3B Frame_Shift_Del p.A583Efs*64 0.22 TCGA-69-7979-01 19 10097252 10097252 C T COL5A3 Missense_Mutation p.D741N 0.27 unknown(0) TCGA-69-7979-01 19 10157449 10157449 G A C3P1 RNA 0.27 TCGA-69-7979-01 19 1041907 1041907 A G ABCA7 Missense_Mutation p.T80A 0.43 deleterious(0.01) benign(0.257) TCGA-69-7979-01 19 10426617 10426617 G A FDX1L Missense_Mutation p.A19V 0.69 tolerated(0.21) benign(0.004) TCGA-69-7979-01 19 1056422 1056422 G T ABCA7 Missense_Mutation p.A1504S 0.73 tolerated(0.16) benign(0.026) TCGA-69-7979-01 19 10625398 10625398 C A S1PR5 Missense_Mutation p.G97V 0.44 deleterious(0) probably_damaging(1) TCGA-69-7979-01 19 11944664 11944664 G T ZNF440 3'UTR 0.48 TCGA-69-7979-01 19 12958701 12958701 C A MAST1 Missense_Mutation p.R202S 0.67 tolerated(0.67) benign(0.087) TCGA-69-7979-01 19 13007233 13007233 G T GCDH Missense_Mutation p.G284W 0.16 deleterious_low_confidence(0) benign(0.32) TCGA-69-7979-01 19 13007234 13007234 G T GCDH Missense_Mutation p.G284V 0.17 deleterious_low_confidence(0.02) benign(0.016) TCGA-69-7979-01 19 13264469 13264469 G T IER2 Missense_Mutation p.A157S 0.42 tolerated(0.73) benign(0.014) TCGA-69-7979-01 19 13409943 13409943 G T CACNA1A Missense_Mutation p.T835N 0.84 possibly_damaging(0.895) TCGA-69-7979-01 19 1478827 1478827 C A C19orf25 Missense_Mutation p.D26Y 0.70 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 19 1487140 1487140 C T PCSK4 Silent p.K285K 0.33 TCGA-69-7979-01 19 15198148 15198148 C T OR1I1 Missense_Mutation p.A91V 0.70 tolerated(0.38) possibly_damaging(0.596) TCGA-69-7979-01 19 15484656 15484656 G A AKAP8 Silent p.S104S 0.36 TCGA-69-7979-01 19 15636270 15636270 G T CYP4F22 Silent p.R41R 0.71 TCGA-69-7979-01 19 17487896 17487896 C A PLVAP Nonsense_Mutation p.E68* 0.41 TCGA-69-7979-01 19 17947978 17947978 C A JAK3 Silent p.R582R 0.72 TCGA-69-7979-01 19 18709363 18709363 G T CRLF1 Silent p.P192P 0.48 TCGA-69-7979-01 19 19349180 19349180 G T NCAN Silent p.L1123L 0.71 TCGA-69-7979-01 19 19616192 19616192 A C GATAD2A Missense_Mutation p.H604P 0.13 deleterious(0) probably_damaging(0.987) TCGA-69-7979-01 19 19766434 19766434 C A ATP13A1 Silent p.G433G 0.26 TCGA-69-7979-01 19 22154549 22154549 C A ZNF208 Missense_Mutation p.W1096L 0.14 tolerated(0.81) benign(0.017) TCGA-69-7979-01 19 22154550 22154550 A G ZNF208 Missense_Mutation p.W1096R 0.14 tolerated(0.78) benign(0.008) TCGA-69-7979-01 19 22157415 22157415 G T ZNF208 Missense_Mutation p.Q141K 0.51 tolerated(0.37) benign(0.226) TCGA-69-7979-01 19 22363186 22363186 C T ZNF676 Missense_Mutation p.G445R 0.15 tolerated(0.09) probably_damaging(0.989) TCGA-69-7979-01 19 22363674 22363674 T G ZNF676 Missense_Mutation p.K282T 0.07 deleterious(0.03) probably_damaging(0.999) TCGA-69-7979-01 19 2252606 2252606 G C JSRP1 Missense_Mutation p.R240G 0.28 deleterious(0) possibly_damaging(0.858) TCGA-69-7979-01 19 22786107 22786107 C G AC011467.1 3'Flank 0.64 TCGA-69-7979-01 19 2878099 2878099 G T ZNF556 Missense_Mutation p.W381C 0.24 tolerated(0.3) benign(0.038) TCGA-69-7979-01 19 30934776 30934776 C G ZNF536 Missense_Mutation p.Q103E 0.44 deleterious(0) probably_damaging(0.966) TCGA-69-7979-01 19 31038958 31038958 C A ZNF536 Missense_Mutation p.P811Q 0.82 deleterious(0) possibly_damaging(0.56) TCGA-69-7979-01 19 31039829 31039829 C A ZNF536 Missense_Mutation p.D1101E 0.72 tolerated_low_confidence(0.37) benign(0.006) TCGA-69-7979-01 19 3278099 3278099 G T CELF5 Missense_Mutation p.Q198H 0.33 deleterious(0) probably_damaging(0.922) TCGA-69-7979-01 19 33450886 33450886 G T CEP89 Silent p.S75S 0.83 TCGA-69-7979-01 19 33464458 33464458 G T C19orf40 Missense_Mutation p.R78L 0.35 deleterious(0.04) benign(0.149) TCGA-69-7979-01 19 34857298 34857298 G C GPI Missense_Mutation p.K96N 0.07 deleterious_low_confidence(0) probably_damaging(1) TCGA-69-7979-01 19 35831821 35831821 C A CD22 Silent p.P429P 0.09 TCGA-69-7979-01 19 35850246 35850246 G A FFAR3 Missense_Mutation p.V152I 0.24 tolerated(1) benign(0.006) TCGA-69-7979-01 19 36212584 36212584 G T KMT2B Missense_Mutation p.G779C 0.38 possibly_damaging(0.667) TCGA-69-7979-01 19 36271526 36271526 C G ARHGAP33 Missense_Mutation p.R249G 0.20 deleterious_low_confidence(0) benign(0.433) TCGA-69-7979-01 19 36605789 36605789 C - POLR2I 5'UTR 0.39 TCGA-69-7979-01 19 36884543 36884543 T A ZFP82 Missense_Mutation p.E233D 0.55 deleterious(0) benign(0.217) TCGA-69-7979-01 19 36940215 36940215 C A ZNF566 Silent p.G308G 0.58 TCGA-69-7979-01 19 36940581 36940581 C A ZNF566 Missense_Mutation p.Q186H 0.16 tolerated(0.44) benign(0.003) TCGA-69-7979-01 19 37147375 37147375 C A ZNF461 Missense_Mutation p.R69S 0.57 tolerated(0.07) benign(0.004) TCGA-69-7979-01 19 37147376 37147376 C A ZNF461 Missense_Mutation p.R69M 0.56 deleterious(0.02) benign(0.436) TCGA-69-7979-01 19 3752855 3752855 T A APBA3 Missense_Mutation p.D382V 0.75 deleterious(0) probably_damaging(0.994) TCGA-69-7979-01 19 39228214 39228214 C T CAPN12 Missense_Mutation p.V344M 0.11 tolerated(0.07) probably_damaging(0.979) TCGA-69-7979-01 19 39805739 39805739 C A LRFN1 Missense_Mutation p.V80L 0.45 tolerated(0.26) benign(0.061) TCGA-69-7979-01 19 39898869 39898869 G T ZFP36 Missense_Mutation p.D177Y 0.51 tolerated(0.2) possibly_damaging(0.647) TCGA-69-7979-01 19 39998106 39998106 C A DLL3 Silent p.G507G 0.30 TCGA-69-7979-01 19 40009409 40009409 G T SELV Missense_Mutation p.Q288H 0.17 tolerated(0.06) possibly_damaging(0.679) TCGA-69-7979-01 19 40009595 40009595 G T SELV Missense_Mutation p.G314V 0.14 deleterious(0) probably_damaging(0.993) TCGA-69-7979-01 19 40149183 40149183 G T LGALS16 Missense_Mutation p.G59V 0.71 deleterious(0) probably_damaging(0.993) TCGA-69-7979-01 19 40433141 40433141 T A FCGBP Silent p.A376A 0.64 TCGA-69-7979-01 19 40877731 40877731 C T PLD3 Missense_Mutation p.T277I 0.09 tolerated(0.14) benign(0.063) TCGA-69-7979-01 19 4307950 4307950 G T FSD1 Silent p.L105L 0.68 TCGA-69-7979-01 19 44833056 44833056 G A ZNF112 Silent p.F424F 0.17 TCGA-69-7979-01 19 44892185 44892185 C G ZNF285 Missense_Mutation p.W74C 0.11 deleterious(0.04) possibly_damaging(0.819) TCGA-69-7979-01 19 44981682 44981682 G T ZNF180 Missense_Mutation p.S339Y 0.51 tolerated(1) possibly_damaging(0.548) TCGA-69-7979-01 19 45781216 45781216 G T MARK4 Silent p.R274R 0.64 TCGA-69-7979-01 19 46825057 46825057 C G HIF3A Missense_Mutation p.A390G 0.14 deleterious(0.01) probably_damaging(0.955) TCGA-69-7979-01 19 4702635 4702635 C T DPP9 Missense_Mutation p.C288Y 0.21 tolerated(0.1) benign(0.281) TCGA-69-7979-01 19 50059812 50059812 C G NOSIP Missense_Mutation p.R240P 0.13 deleterious(0) probably_damaging(0.974) TCGA-69-7979-01 19 50779294 50779294 C T MYH14 Missense_Mutation p.R1172W 0.85 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 19 51165554 51165554 G C SHANK1 Missense_Mutation p.P2052A 0.56 unknown(0) TCGA-69-7979-01 19 51170166 51170166 C A SHANK1 Missense_Mutation p.S1684I 0.45 unknown(0) TCGA-69-7979-01 19 51462385 51462385 G T KLK6 3'UTR 0.52 TCGA-69-7979-01 19 51645885 51645885 G T SIGLEC7 Missense_Mutation p.V87L 0.45 tolerated(0.2) benign(0.406) TCGA-69-7979-01 19 51955638 51955638 C T SIGLEC8 Missense_Mutation p.G499S 0.63 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-69-7979-01 19 52448661 52448661 G T ZNF613 Nonsense_Mutation p.E509* 0.63 TCGA-69-7979-01 19 5273532 5273532 C G PTPRS Silent p.R100R 0.19 TCGA-69-7979-01 19 53209778 53209778 C A ZNF611 Missense_Mutation p.G177V 0.44 tolerated(0.5) benign(0.1) TCGA-69-7979-01 19 53454766 53454766 C A ZNF816 Missense_Mutation p.G88W 0.14 deleterious(0.02) probably_damaging(1) TCGA-69-7979-01 19 53473687 53473687 G C ZNF702P RNA 0.62 TCGA-69-7979-01 19 53740619 53740619 G T ZNF677 Missense_Mutation p.T454N 0.46 deleterious(0) probably_damaging(0.986) TCGA-69-7979-01 19 54234279 54234279 A T MIR518A1 RNA 0.64 TCGA-69-7979-01 19 5455636 5455636 C A ZNRF4 Missense_Mutation p.P45H 0.65 deleterious_low_confidence(0) benign(0.407) TCGA-69-7979-01 19 54783382 54783382 C A LILRB2 Missense_Mutation p.G159V 0.81 deleterious(0.01) probably_damaging(0.984) TCGA-69-7979-01 19 54802639 54802639 G T LILRA3 Missense_Mutation p.R268S 0.24 tolerated(0.47) benign(0.092) TCGA-69-7979-01 19 54867867 54867867 C A LAIR1 Silent p.L212L 0.63 TCGA-69-7979-01 19 54932498 54932498 G T TTYH1 Missense_Mutation p.G118V 0.52 deleterious(0) probably_damaging(1) TCGA-69-7979-01 19 55145107 55145107 G C LILRB1 Missense_Mutation p.S427T 0.47 tolerated(0.13) benign(0.061) TCGA-69-7979-01 19 55525920 55525920 C A GP6 Missense_Mutation p.V465F 0.23 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-69-7979-01 19 55816283 55816285 TGC ATT BRSK1 Nonsense_Mutation p.MQ571N* 0.17 TCGA-69-7979-01 19 55992757 55992757 G T ZNF628 Missense_Mutation p.C66F 0.24 deleterious(0) probably_damaging(0.998) TCGA-69-7979-01 19 56320145 56320145 G C NLRP11 Missense_Mutation p.P611A 0.83 tolerated(0.36) benign(0.024) TCGA-69-7979-01 19 56424028 56424028 C A NLRP13 Silent p.G385G 0.82 TCGA-69-7979-01 19 56465930 56465930 C A NLRP8 Missense_Mutation p.T169N 0.87 tolerated(0.21) benign(0.223) TCGA-69-7979-01 19 56703266 56703266 G T ZSCAN5B Silent p.R181R 0.53 TCGA-69-7979-01 19 56904848 56904848 G T ZNF582 5'UTR 0.79 TCGA-69-7979-01 19 58004507 58004507 G T ZNF419 Missense_Mutation p.E195D 0.79 tolerated(0.25) possibly_damaging(0.76) TCGA-69-7979-01 19 58117834 58117834 A T ZNF530 Missense_Mutation p.Q314L 0.48 deleterious(0.01) possibly_damaging(0.894) TCGA-69-7979-01 19 5831888 5831888 C T FUT6 Missense_Mutation p.G231R 0.33 tolerated(0.38) benign(0.048) TCGA-69-7979-01 19 5914579 5914579 T C CAPS Missense_Mutation p.F30S 0.10 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 19 619607 619607 C T POLRMT Silent p.R1015R 0.36 TCGA-69-7979-01 19 6374930 6374930 C T ALKBH7 Silent p.S204S 0.66 TCGA-69-7979-01 19 6432093 6432093 C A SLC25A41 Silent p.T110T 0.32 TCGA-69-7979-01 19 6664910 6664910 C A TNFSF14 3'UTR 0.32 TCGA-69-7979-01 19 814478 814478 C T LPPR3 Missense_Mutation p.V291M 0.20 deleterious(0) probably_damaging(0.991) TCGA-69-7979-01 19 8601171 8601171 C T MYO1F Missense_Mutation p.G670R 0.64 deleterious(0.02) probably_damaging(0.949) TCGA-69-7979-01 19 8660752 8660752 G T ADAMTS10 Missense_Mutation p.P458H 0.72 deleterious(0.01) probably_damaging(0.982) TCGA-69-7979-01 19 8807792 8807792 C G ACTL9 3'UTR 0.43 TCGA-69-7979-01 19 8971716 8971716 C G MUC16 Missense_Mutation p.W14292C 0.63 possibly_damaging(0.861) TCGA-69-7979-01 19 9000511 9000511 C A MUC16 Silent p.R13491R 0.25 TCGA-69-7979-01 19 9026256 9026256 C A MUC16 Nonsense_Mutation p.E12244* 0.32 TCGA-69-7979-01 19 9028327 9028327 G T MUC16 Silent p.L12155L 0.46 TCGA-69-7979-01 19 9061255 9061255 C A MUC16 Nonsense_Mutation p.G8731* 0.39 TCGA-69-7979-01 19 9084154 9084154 G C MUC16 Missense_Mutation p.S2554C 0.81 unknown(0) TCGA-69-7979-01 19 9806883 9806883 G T ZNF812 5'UTR 0.69 TCGA-69-7979-01 1 101704857 101704857 G T S1PR1 Missense_Mutation p.G106V 0.44 deleterious(0) probably_damaging(1) TCGA-69-7979-01 1 10384037 10384037 G T KIF1B Missense_Mutation p.R772S 0.28 tolerated(0.08) possibly_damaging(0.86) TCGA-69-7979-01 1 104117960 104117960 G T AMY2B Missense_Mutation p.D332Y 0.24 deleterious(0.03) probably_damaging(0.987) TCGA-69-7979-01 1 10725578 10725578 G A CASZ1 Missense_Mutation p.P23S 0.26 deleterious_low_confidence(0.02) benign(0.043) TCGA-69-7979-01 1 108116777 108116777 G T VAV3 Missense_Mutation p.D798E 0.13 deleterious(0) probably_damaging(0.927) TCGA-69-7979-01 1 110255993 110255993 T C GSTM5 Intron 0.50 TCGA-69-7979-01 1 110754526 110754526 C G KCNC4 Missense_Mutation p.I135M 0.07 deleterious(0) probably_damaging(0.943) TCGA-69-7979-01 1 111146634 111146634 G T KCNA2 Silent p.I257I 0.33 TCGA-69-7979-01 1 111991375 111991375 C G WDR77 Missense_Mutation p.G56A 0.31 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 1 115251276 115251276 C A NRAS Splice_Site p.X151_splice 0.33 TCGA-69-7979-01 1 11577576 11577576 G T PTCHD2 Missense_Mutation p.W602C 0.49 deleterious(0.04) benign(0.094) TCGA-69-7979-01 1 116519197 116519197 G A SLC22A15 5'UTR 0.31 TCGA-69-7979-01 1 1190706 1190706 G C UBE2J2 Silent p.L235L 0.22 TCGA-69-7979-01 1 119962117 119962117 G T HSD3B2 Missense_Mutation p.Q73H 0.32 deleterious(0.01) possibly_damaging(0.624) TCGA-69-7979-01 1 1221544 1221544 A T SCNN1D Missense_Mutation p.Q266L 0.50 deleterious(0) probably_damaging(0.99) TCGA-69-7979-01 1 12921530 12921530 C T PRAMEF2 Silent p.L441L 0.32 TCGA-69-7979-01 1 12942031 12942031 G T PRAMEF4 Silent p.V173V 0.27 TCGA-69-7979-01 1 12952827 12952827 T A PRAMEF10 Missense_Mutation p.R449W 0.32 deleterious(0.02) benign(0.318) TCGA-69-7979-01 1 150602029 150602029 C T ENSA 5'UTR 0.08 TCGA-69-7979-01 1 151381005 151381005 T C POGZ Missense_Mutation p.N705S 0.28 tolerated(0.78) benign(0.001) TCGA-69-7979-01 1 152188526 152188526 C G HRNR Missense_Mutation p.R1860P 0.13 unknown(0) TCGA-69-7979-01 1 152279739 152279739 G T FLG Silent p.A2541A 0.19 TCGA-69-7979-01 1 152280902 152280902 G A FLG Nonsense_Mutation p.Q2154* 0.24 TCGA-69-7979-01 1 152280947 152280947 G T FLG Missense_Mutation p.R2139S 0.22 benign(0.353) TCGA-69-7979-01 1 152282136 152282136 G T FLG Silent p.P1742P 0.12 TCGA-69-7979-01 1 152283256 152283256 C A FLG Missense_Mutation p.R1369I 0.35 possibly_damaging(0.639) TCGA-69-7979-01 1 152681628 152681628 C A LCE4A Missense_Mutation p.P26H 0.26 deleterious_low_confidence(0.01) unknown(0) TCGA-69-7979-01 1 152760109 152760109 C A LCE1E Missense_Mutation p.Q112K 0.27 tolerated_low_confidence(0.6) unknown(0) TCGA-69-7979-01 1 152882269 152882269 C A IVL 5'UTR 0.05 TCGA-69-7979-01 1 152976028 152976028 T A SPRR3 3'UTR 0.41 TCGA-69-7979-01 1 153315566 153315566 C A PGLYRP4 Missense_Mutation p.G158C 0.31 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 1 153604070 153604070 C A S100A1 Intron 0.43 TCGA-69-7979-01 1 153659213 153659213 G T NPR1 Missense_Mutation p.R617L 0.19 deleterious(0) probably_damaging(0.997) TCGA-69-7979-01 1 155223914 155223914 C T FAM189B Silent p.K118K 0.12 TCGA-69-7979-01 1 155238094 155238094 C A CLK2 Missense_Mutation p.D181Y 0.43 deleterious(0) probably_damaging(0.977) TCGA-69-7979-01 1 155324311 155324311 T A ASH1L Missense_Mutation p.Y2389F 0.20 deleterious_low_confidence(0.03) benign(0.228) TCGA-69-7979-01 1 155838522 155838522 G C SYT11 Silent p.G267G 0.12 TCGA-69-7979-01 1 156127866 156127866 G A SEMA4A Silent p.P102P 0.26 TCGA-69-7979-01 1 156513998 156513998 C T IQGAP3 Silent p.R802R 0.08 TCGA-69-7979-01 1 156615899 156615899 C A BCAN Missense_Mutation p.P18H 0.14 tolerated(0.06) unknown(0) TCGA-69-7979-01 1 156621456 156621456 A T BCAN Silent p.P424P 0.13 TCGA-69-7979-01 1 156816314 156816314 C A INSRR Missense_Mutation p.A603S 0.19 tolerated(0.62) benign(0.123) TCGA-69-7979-01 1 157514223 157514223 G - FCRL5 Frame_Shift_Del p.R225Gfs*13 0.20 TCGA-69-7979-01 1 157771805 157771805 G T FCRL1 Missense_Mutation p.F262L 0.51 tolerated(0.08) possibly_damaging(0.812) TCGA-69-7979-01 1 158046020 158046020 G C KIRREL Missense_Mutation p.G57A 0.10 deleterious(0) probably_damaging(0.958) TCGA-69-7979-01 1 158046021 158046021 G C KIRREL Silent p.G57G 0.12 TCGA-69-7979-01 1 158058245 158058245 G C KIRREL Splice_Site p.X348_splice 0.19 TCGA-69-7979-01 1 158064642 158064642 G T KIRREL Missense_Mutation p.G669V 0.31 tolerated(0.08) benign(0.118) TCGA-69-7979-01 1 158263285 158263285 C G CD1C 3'UTR 0.64 TCGA-69-7979-01 1 158390621 158390621 G T OR10K2 Silent p.V12V 0.05 TCGA-69-7979-01 1 158576252 158576252 C A OR10Z1 Silent p.S8S 0.09 TCGA-69-7979-01 1 158626361 158626361 G T SPTA1 Missense_Mutation p.A964D 0.73 tolerated(0.15) benign(0.134) TCGA-69-7979-01 1 158627270 158627270 A T SPTA1 Silent p.A934A 0.05 TCGA-69-7979-01 1 158632626 158632626 G A SPTA1 Missense_Mutation p.A777V 0.81 deleterious(0.02) benign(0.328) TCGA-69-7979-01 1 158637796 158637796 C T SPTA1 Silent p.L630L 0.06 TCGA-69-7979-01 1 158648220 158648220 G T SPTA1 Silent p.S261S 0.08 TCGA-69-7979-01 1 158747406 158747406 G T OR6N2 Nonsense_Mutation p.S7* 0.13 TCGA-69-7979-01 1 159035876 159035876 G C AIM2 Missense_Mutation p.R214G 0.19 tolerated(0.13) benign(0.006) TCGA-69-7979-01 1 159166200 159166200 G A CADM3 Silent p.E280E 0.27 TCGA-69-7979-01 1 159558220 159558220 C A APCS Missense_Mutation p.P132T 0.27 deleterious(0.01) probably_damaging(0.991) TCGA-69-7979-01 1 160293314 160293314 C A COPA Missense_Mutation p.D205Y 0.49 deleterious(0) probably_damaging(0.988) TCGA-69-7979-01 1 160390876 160390876 G T VANGL2 Silent p.R324R 0.15 TCGA-69-7979-01 1 160808825 160808825 G C CD244 Missense_Mutation p.P229A 0.12 tolerated(0.5) benign(0.046) TCGA-69-7979-01 1 160920494 160920494 C A ITLN2 Missense_Mutation p.G150V 0.53 deleterious(0) probably_damaging(0.962) TCGA-69-7979-01 1 161023116 161023116 A C ARHGAP30 Missense_Mutation p.V199G 0.17 deleterious(0) probably_damaging(0.992) TCGA-69-7979-01 1 161070589 161070589 C T PFDN2 Missense_Mutation p.E117K 0.18 tolerated(0.09) benign(0.241) TCGA-69-7979-01 1 161130660 161130660 G T USP21 Missense_Mutation p.R77L 0.16 tolerated_low_confidence(0.06) benign(0.088) TCGA-69-7979-01 1 161166389 161166389 C A ADAMTS4 Silent p.S305S 0.39 TCGA-69-7979-01 1 161184057 161184057 C T NDUFS2 3'UTR 0.50 TCGA-69-7979-01 1 161823103 161823103 G T ATF6 Missense_Mutation p.R508L 0.31 deleterious(0.01) possibly_damaging(0.578) TCGA-69-7979-01 1 161953817 161953817 G T OLFML2B Missense_Mutation p.P634Q 0.12 deleterious(0) probably_damaging(1) TCGA-69-7979-01 1 162337011 162337011 G C NOS1AP Missense_Mutation p.L425F 0.18 tolerated_low_confidence(0.19) benign(0.426) TCGA-69-7979-01 1 164815970 164815970 G T PBX1 3'UTR 0.35 TCGA-69-7979-01 1 165324806 165324806 G T LMX1A 5'UTR 0.17 TCGA-69-7979-01 1 166927016 166927016 C A ILDR2 Silent p.T123T 0.36 TCGA-69-7979-01 1 167095239 167095239 G T DUSP27 Nonsense_Mutation p.G291* 0.17 TCGA-69-7979-01 1 167095846 167095846 G T DUSP27 Missense_Mutation p.R493L 0.38 deleterious(0.04) benign(0.131) TCGA-69-7979-01 1 167741713 167741713 G T MPZL1 Missense_Mutation p.V154F 0.17 deleterious(0) probably_damaging(0.975) TCGA-69-7979-01 1 168034950 168034950 G T DCAF6 Silent p.V854V 0.20 TCGA-69-7979-01 1 168034951 168034951 G T DCAF6 Missense_Mutation p.V855L 0.20 deleterious(0) probably_damaging(0.967) TCGA-69-7979-01 1 169388233 169388233 C A CCDC181 Intron 0.09 TCGA-69-7979-01 1 169798490 169798490 G A C1orf112 Missense_Mutation p.S405N 0.14 tolerated(0.51) benign(0.013) TCGA-69-7979-01 1 169941689 169941689 G A KIFAP3 Nonsense_Mutation p.R650* 0.09 TCGA-69-7979-01 1 170695527 170695527 C A PRRX1 Missense_Mutation p.T195K 0.19 tolerated(0.08) benign(0.051) TCGA-69-7979-01 1 170695528 170695528 A G PRRX1 Silent p.T195T 0.20 TCGA-69-7979-01 1 171083399 171083399 A G FMO3 Silent p.L360L 0.07 TCGA-69-7979-01 1 171236682 171236682 G T FMO1 Nonsense_Mutation p.E45* 0.21 TCGA-69-7979-01 1 171504727 171504727 G C PRRC2C Missense_Mutation p.Q676H 0.08 unknown(0) TCGA-69-7979-01 1 171509779 171509779 G T PRRC2C Missense_Mutation p.K1056N 0.16 unknown(0) TCGA-69-7979-01 1 17296392 17296392 G T CROCC Missense_Mutation p.R1805L 0.34 benign(0.433) TCGA-69-7979-01 1 173155712 173155712 C T TNFSF4 Silent p.V165V 0.24 TCGA-69-7979-01 1 173569328 173569328 A T SLC9C2 Nonsense_Mutation p.C52* 0.27 TCGA-69-7979-01 1 173616095 173616095 A T ANKRD45 Missense_Mutation p.L129Q 0.10 deleterious(0) probably_damaging(1) TCGA-69-7979-01 1 174219765 174219765 C A RABGAP1L Missense_Mutation p.N290K 0.12 tolerated(0.15) benign(0.215) TCGA-69-7979-01 1 175332958 175332958 C A TNR Missense_Mutation p.D865Y 0.26 deleterious(0.01) probably_damaging(0.992) TCGA-69-7979-01 1 175334349 175334349 C A TNR Missense_Mutation p.S795I 0.27 tolerated(0.07) probably_damaging(0.972) TCGA-69-7979-01 1 175335275 175335275 C G TNR Splice_Site p.X685_splice 0.17 TCGA-69-7979-01 1 176564447 176564447 C A PAPPA2 Silent p.V569V 0.12 TCGA-69-7979-01 1 176664948 176664948 G A PAPPA2 Missense_Mutation p.R900Q 0.17 deleterious(0.04) benign(0.018) TCGA-69-7979-01 1 176738827 176738827 T A PAPPA2 Missense_Mutation p.S1470T 0.13 tolerated(0.42) benign(0.038) TCGA-69-7979-01 1 176811643 176811643 G T PAPPA2 3'UTR 0.27 TCGA-69-7979-01 1 176838111 176838111 C A ASTN1 Missense_Mutation p.E1172D 0.18 deleterious(0.01) probably_damaging(0.941) TCGA-69-7979-01 1 177249822 177249822 G T BRINP2 Missense_Mutation p.G504W 0.07 deleterious(0) probably_damaging(0.991) TCGA-69-7979-01 1 177902616 177902616 C A SEC16B Intron 0.36 TCGA-69-7979-01 1 177934212 177934212 G C SEC16B Missense_Mutation p.P168R 0.13 deleterious(0.03) benign(0.197) TCGA-69-7979-01 1 181689448 181689448 C T CACNA1E Silent p.L620L 0.22 TCGA-69-7979-01 1 181701867 181701867 C A CACNA1E Missense_Mutation p.P882Q 0.18 tolerated(0.09) possibly_damaging(0.804) TCGA-69-7979-01 1 181726102 181726102 G A CACNA1E Missense_Mutation p.G1390D 0.08 deleterious(0) probably_damaging(0.982) TCGA-69-7979-01 1 182369333 182369333 A T TEDDM1 Nonsense_Mutation p.C96* 0.22 TCGA-69-7979-01 1 182909601 182909602 - T SHCBP1L Frame_Shift_Ins p.N211Kfs*11 0.09 TCGA-69-7979-01 1 183101554 183101554 G A LAMC1 Missense_Mutation p.D1196N 0.20 tolerated(0.31) benign(0.002) TCGA-69-7979-01 1 18554453 18554453 G T IGSF21 Missense_Mutation p.L44F 0.34 deleterious(0) probably_damaging(0.998) TCGA-69-7979-01 1 186084071 186084071 G T HMCN1 Missense_Mutation p.Q3799H 0.08 probably_damaging(0.997) TCGA-69-7979-01 1 186086648 186086648 C G HMCN1 Missense_Mutation p.A3914G 0.20 benign(0.209) TCGA-69-7979-01 1 18808834 18808834 G T KLHDC7A Silent p.A453A 0.26 TCGA-69-7979-01 1 190067044 190067044 G T BRINP3 3'UTR 0.63 TCGA-69-7979-01 1 190195299 190195299 G T BRINP3 Missense_Mutation p.P292T 0.16 deleterious(0) probably_damaging(0.997) TCGA-69-7979-01 1 19166287 19166287 G T TAS1R2 Missense_Mutation p.L776I 0.27 tolerated(0.1) probably_damaging(0.951) TCGA-69-7979-01 1 19596151 19596151 C T AKR7L Intron 0.21 TCGA-69-7979-01 1 196977800 196977800 C G CFHR5 Missense_Mutation p.P566R 0.29 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 1 197447033 197447033 G T CRB1 3'UTR 0.17 TCGA-69-7979-01 1 200948800 200948800 G T KIF21B Silent p.I1341I 0.26 TCGA-69-7979-01 1 200974497 200974497 C A KIF21B Missense_Mutation p.R224L 0.24 deleterious(0.01) probably_damaging(0.988) TCGA-69-7979-01 1 201079291 201079291 C A CACNA1S Splice_Site p.X86_splice 0.04 TCGA-69-7979-01 1 201292277 201292277 G T PKP1 Missense_Mutation p.C568F 0.24 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 1 202462301 202462301 G T PPP1R12B Missense_Mutation p.E667D 0.21 tolerated(0.09) probably_damaging(0.977) TCGA-69-7979-01 1 202699083 202699083 C A KDM5B Nonsense_Mutation p.E1417* 0.36 TCGA-69-7979-01 1 203192643 203192643 G T CHIT1 Missense_Mutation p.R154S 0.15 tolerated(0.1) possibly_damaging(0.828) TCGA-69-7979-01 1 203452763 203452763 G T PRELP Missense_Mutation p.G151C 0.09 deleterious(0.01) possibly_damaging(0.622) TCGA-69-7979-01 1 204944495 204944495 A T NFASC Missense_Mutation p.K552I 0.55 tolerated(0.64) probably_damaging(0.981) TCGA-69-7979-01 1 205589767 205589767 G A ELK4 Missense_Mutation p.S136F 0.41 deleterious(0) probably_damaging(0.995) TCGA-69-7979-01 1 205779531 205779531 C T SLC41A1 Silent p.L13L 0.17 TCGA-69-7979-01 1 205904929 205904929 C A SLC26A9 Missense_Mutation p.R7L 0.17 deleterious(0.02) probably_damaging(0.985) TCGA-69-7979-01 1 20964599 20964599 A C PINK1 Missense_Mutation p.I218L 0.23 tolerated(0.12) possibly_damaging(0.677) TCGA-69-7979-01 1 209950718 209950718 C A TRAF3IP3 Missense_Mutation p.Q359K 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-69-7979-01 1 209956458 209956458 C A C1orf74 Silent p.G174G 0.52 TCGA-69-7979-01 1 210411457 210411457 G T SERTAD4 Missense_Mutation p.R51L 0.29 tolerated(0.18) benign(0.149) TCGA-69-7979-01 1 210847698 210847698 G A HHAT Missense_Mutation p.A488T 0.21 tolerated_low_confidence(0.21) benign(0.067) TCGA-69-7979-01 1 214819355 214819355 G T CENPF Nonsense_Mutation p.E2148* 0.45 TCGA-69-7979-01 1 215847952 215847952 G T USH2A Nonsense_Mutation p.S4434* 0.43 TCGA-69-7979-01 1 216348733 216348733 G C USH2A Silent p.P1496P 0.40 TCGA-69-7979-01 1 216538408 216538408 C A USH2A Missense_Mutation p.S224I 0.19 probably_damaging(0.987) TCGA-69-7979-01 1 220089008 220089008 C A SLC30A10 Missense_Mutation p.C414F 0.13 deleterious(0) probably_damaging(0.998) TCGA-69-7979-01 1 220198587 220198587 C T EPRS Missense_Mutation p.G213R 0.19 deleterious(0) probably_damaging(0.977) TCGA-69-7979-01 1 227300077 227300077 C A CDC42BPA Missense_Mutation p.R646M 0.24 deleterious(0) possibly_damaging(0.786) TCGA-69-7979-01 1 228432196 228432196 G T OBSCN Missense_Mutation p.Q1227H 0.34 possibly_damaging(0.793) TCGA-69-7979-01 1 228482036 228482036 G T OBSCN Missense_Mutation p.R4201L 0.20 possibly_damaging(0.647) TCGA-69-7979-01 1 228509541 228509541 G T OBSCN Missense_Mutation p.G5957V 0.15 probably_damaging(0.988) TCGA-69-7979-01 1 228612547 228612547 G T HIST3H3 3'UTR 0.29 TCGA-69-7979-01 1 230381896 230381896 G T GALNT2 Missense_Mutation p.G273C 0.06 deleterious(0) probably_damaging(1) TCGA-69-7979-01 1 231408087 231408087 C T GNPAT Missense_Mutation p.R518C 0.10 tolerated(0.13) benign(0.028) TCGA-69-7979-01 1 235299086 235299086 C T RBM34 Splice_Site p.X297_splice 0.17 TCGA-69-7979-01 1 236141286 236141286 G T NID1 Missense_Mutation p.H1209N 0.46 tolerated(0.2) benign(0.007) TCGA-69-7979-01 1 23660105 23660105 C A HNRNPR Missense_Mutation p.G135V 0.25 deleterious(0) possibly_damaging(0.567) TCGA-69-7979-01 1 236721634 236721634 C G HEATR1 Missense_Mutation p.E1703Q 0.10 tolerated(0.07) benign(0.009) TCGA-69-7979-01 1 237670104 237670104 A T RYR2 Missense_Mutation p.Q903L 0.20 benign(0.02) TCGA-69-7979-01 1 237670105 237670105 G T RYR2 Missense_Mutation p.Q903H 0.19 possibly_damaging(0.663) TCGA-69-7979-01 1 237753163 237753163 C A RYR2 Silent p.T1223T 0.11 TCGA-69-7979-01 1 237870363 237870363 C A RYR2 Missense_Mutation p.P3232Q 0.32 possibly_damaging(0.853) TCGA-69-7979-01 1 237890454 237890454 C G RYR2 Missense_Mutation p.A3598G 0.21 benign(0.045) TCGA-69-7979-01 1 237961397 237961397 G T RYR2 Missense_Mutation p.D4673Y 0.27 probably_damaging(0.953) TCGA-69-7979-01 1 238090289 238090289 C A RP11-193H5.1 RNA 0.28 TCGA-69-7979-01 1 238090364 238090364 T A RP11-193H5.1 RNA 0.27 TCGA-69-7979-01 1 23885763 23885763 C A ID3 Missense_Mutation p.R52L 0.38 deleterious(0) possibly_damaging(0.496) TCGA-69-7979-01 1 241261965 241261965 C A RGS7 Splice_Site p.X59_splice 0.50 TCGA-69-7979-01 1 2436204 2436204 G T PLCH2 3'UTR 0.12 TCGA-69-7979-01 1 243668538 243668538 G T AKT3 3'UTR 0.40 TCGA-69-7979-01 1 247463807 247463807 C G ZNF496 3'UTR 0.07 TCGA-69-7979-01 1 247582310 247582310 G T NLRP3 Missense_Mutation p.V72L 0.09 tolerated(1) benign(0.011) TCGA-69-7979-01 1 247695507 247695507 A T OR2C3 Missense_Mutation p.Y103N 0.16 deleterious(0) possibly_damaging(0.451) TCGA-69-7979-01 1 247768911 247768911 C A OR2G3 Silent p.S8S 0.31 TCGA-69-7979-01 1 248112854 248112854 G T OR2L8 Missense_Mutation p.G232V 0.11 deleterious(0) probably_damaging(0.983) TCGA-69-7979-01 1 248309179 248309179 C A OR2M5 Missense_Mutation p.H244N 0.36 deleterious(0.01) possibly_damaging(0.582) TCGA-69-7979-01 1 248343719 248343719 G T OR2M2 Missense_Mutation p.M144I 0.20 tolerated(0.23) benign(0.057) TCGA-69-7979-01 1 248402744 248402744 C A OR2M4 Missense_Mutation p.L172M 0.07 deleterious(0) possibly_damaging(0.811) TCGA-69-7979-01 1 248814163 248814163 A T OR2T27 Missense_Mutation p.V8E 0.13 tolerated(0.5) benign(0.017) TCGA-69-7979-01 1 24995874 24995874 G T SRRM1 Missense_Mutation p.S667I 0.47 unknown(0) TCGA-69-7979-01 1 25229132 25229132 G C RUNX3 Silent p.S257S 0.34 TCGA-69-7979-01 1 25245810 25245810 A T RUNX3 Silent p.T169T 0.36 TCGA-69-7979-01 1 31742092 31742092 A T SNRNP40 Intron 0.25 TCGA-69-7979-01 1 32203347 32203347 G T BAI2 Missense_Mutation p.L928M 0.27 tolerated(0.21) possibly_damaging(0.547) TCGA-69-7979-01 1 33790505 33790505 C T PHC2 Silent p.L846L 0.10 TCGA-69-7979-01 1 34035017 34035017 G A CSMD2 Silent p.C2698C 0.24 TCGA-69-7979-01 1 34238173 34238173 C A CSMD2 Missense_Mutation p.V575L 0.24 deleterious(0.03) possibly_damaging(0.456) TCGA-69-7979-01 1 35227407 35227407 G T GJB4 Missense_Mutation p.K184N 0.20 tolerated(0.29) benign(0.044) TCGA-69-7979-01 1 35881141 35881141 C A ZMYM4 Missense_Mutation p.L1379I 0.07 deleterious(0) probably_damaging(0.998) TCGA-69-7979-01 1 36564489 36564489 C A COL8A2 Nonsense_Mutation p.E265* 0.33 TCGA-69-7979-01 1 3662330 3662330 C A TP73-AS1 RNA 0.51 TCGA-69-7979-01 1 36644085 36644085 G T MAP7D1 Missense_Mutation p.G592C 0.41 probably_damaging(1) TCGA-69-7979-01 1 37270610 37270610 C A GRIK3 Missense_Mutation p.R848L 0.34 deleterious(0) benign(0.018) TCGA-69-7979-01 1 38058343 38058343 C - GNL2 Frame_Shift_Del p.A72Qfs*3 0.24 TCGA-69-7979-01 1 38331516 38331516 C A INPP5B Nonsense_Mutation p.E811* 0.33 TCGA-69-7979-01 1 43778833 43778833 C G TIE1 Missense_Mutation p.A652G 0.29 deleterious(0) probably_damaging(0.998) TCGA-69-7979-01 1 46033641 46033641 G A AKR1A1 Intron 0.43 TCGA-69-7979-01 1 46193421 46193421 G A IPP Silent p.L310L 0.21 TCGA-69-7979-01 1 48697711 48697711 C A SLC5A9 Missense_Mutation p.P287Q 0.26 deleterious(0) probably_damaging(1) TCGA-69-7979-01 1 48699341 48699341 G T SLC5A9 Missense_Mutation p.V375L 0.25 deleterious(0) probably_damaging(1) TCGA-69-7979-01 1 49511276 49511276 C A AGBL4 Nonsense_Mutation p.E192* 0.27 TCGA-69-7979-01 1 50610756 50610756 C T ELAVL4 Missense_Mutation p.T63I 0.24 deleterious(0) probably_damaging(0.998) TCGA-69-7979-01 1 54262708 54262708 C G NDC1 Silent p.V444V 0.12 TCGA-69-7979-01 1 55118589 55118589 C A MROH7 5'UTR 0.24 TCGA-69-7979-01 1 67099786 67099786 G T SGIP1 Intron 0.25 TCGA-69-7979-01 1 67292623 67292623 G C WDR78 Missense_Mutation p.S740C 0.18 deleterious(0.04) benign(0.202) TCGA-69-7979-01 1 67816615 67816615 G C IL12RB2 Silent p.L367L 0.13 TCGA-69-7979-01 1 75037595 75037595 C A C1orf173 Missense_Mutation p.V1267L 0.27 tolerated(0.29) benign(0.006) TCGA-69-7979-01 1 75037596 75037596 G A C1orf173 Silent p.V1266V 0.28 TCGA-69-7979-01 1 75681449 75681449 G T SLC44A5 Missense_Mutation p.A573D 0.37 deleterious(0) probably_damaging(0.993) TCGA-69-7979-01 1 7724722 7724722 C T CAMTA1 Silent p.L705L 0.19 TCGA-69-7979-01 1 78047528 78047528 C G ZZZ3 Missense_Mutation p.G614A 0.45 tolerated(0.06) possibly_damaging(0.81) TCGA-69-7979-01 1 79403644 79403644 T A ELTD1 Missense_Mutation p.Q203L 0.22 deleterious(0) benign(0.375) TCGA-69-7979-01 1 82408774 82408774 G T LPHN2 Missense_Mutation p.M173I 0.33 deleterious(0.01) possibly_damaging(0.661) TCGA-69-7979-01 1 8384596 8384596 G T SLC45A1 Silent p.P69P 0.11 TCGA-69-7979-01 1 86200574 86200574 G A COL24A1 Missense_Mutation p.T1619I 0.14 tolerated(0.19) probably_damaging(0.981) TCGA-69-7979-01 1 87045786 87045786 C A CLCA4 Missense_Mutation p.H840N 0.21 tolerated(0.43) benign(0.009) TCGA-69-7979-01 1 91182495 91182495 G A BARHL2 Silent p.H86H 0.24 TCGA-69-7979-01 1 99470168 99470168 C T LPPR5 Missense_Mutation p.M20I 0.32 deleterious(0.01) benign(0.214) TCGA-69-7979-01 1 99771917 99771917 C A LPPR4 Missense_Mutation p.P548H 0.28 deleterious(0.01) benign(0.022) TCGA-69-7979-01 20 18440853 18440853 T C DZANK1 Missense_Mutation p.I69M 0.14 tolerated(0.07) benign(0.044) TCGA-69-7979-01 20 23584266 23584266 G T CST9 Missense_Mutation p.L121M 0.16 tolerated(0.1) possibly_damaging(0.505) TCGA-69-7979-01 20 2361553 2361553 C A TGM6 5'Flank 0.48 TCGA-69-7979-01 20 23667729 23667729 T G CST4 Missense_Mutation p.Q113P 0.23 tolerated(0.11) possibly_damaging(0.664) TCGA-69-7979-01 20 25442267 25442267 T A NINL Missense_Mutation p.D1196V 0.39 tolerated(0.11) benign(0.014) TCGA-69-7979-01 20 257889 257889 T C C20orf96 Missense_Mutation p.Q234R 0.05 tolerated(0.11) probably_damaging(0.993) TCGA-69-7979-01 20 29623195 29623195 G C FRG1B Missense_Mutation p.E3Q 0.04 tolerated_low_confidence(0.51) benign(0.007) TCGA-69-7979-01 20 30064507 30064507 G A REM1 Missense_Mutation p.G87R 0.26 deleterious(0) probably_damaging(1) TCGA-69-7979-01 20 3025467 3025467 G T GNRH2 Silent p.L99L 0.16 TCGA-69-7979-01 20 30915464 30915464 G T KIF3B Missense_Mutation p.R656S 0.22 deleterious(0.01) benign(0.022) TCGA-69-7979-01 20 31436496 31436496 G A MAPRE1 Missense_Mutation p.D257N 0.48 tolerated(0.06) unknown(0) TCGA-69-7979-01 20 31622634 31622634 G T BPIFB6 Missense_Mutation p.R123L 0.37 tolerated(0.13) benign(0.003) TCGA-69-7979-01 20 31672752 31672752 C T BPIFB4 Silent p.G244G 0.31 TCGA-69-7979-01 20 3211997 3211997 G T SLC4A11 Silent p.L352L 0.37 TCGA-69-7979-01 20 3212166 3212166 G A SLC4A11 Missense_Mutation p.A296V 0.30 deleterious(0) benign(0.378) TCGA-69-7979-01 20 33065588 33065588 C A ITCH Missense_Mutation p.F568L 0.06 tolerated(1) benign(0) TCGA-69-7979-01 20 33065629 33065629 C T ITCH Missense_Mutation p.P582L 0.24 tolerated(0.08) benign(0.001) TCGA-69-7979-01 20 34129923 34129923 G T ERGIC3 Missense_Mutation p.G26V 0.37 deleterious(0.03) benign(0.381) TCGA-69-7979-01 20 35506305 35506305 A T TLDC2 Missense_Mutation p.S13C 0.36 deleterious(0.04) possibly_damaging(0.711) TCGA-69-7979-01 20 36869077 36869078 GG T KIAA1755 Frame_Shift_Del p.P486Rfs*49 0.27 TCGA-69-7979-01 20 37353602 37353602 G T SLC32A1 Missense_Mutation p.V79F 0.36 tolerated(0.72) benign(0.001) TCGA-69-7979-01 20 37356416 37356416 G T SLC32A1 Missense_Mutation p.V238L 0.32 tolerated(0.5) benign(0.012) TCGA-69-7979-01 20 37464808 37464808 C G PPP1R16B Missense_Mutation p.D80E 0.16 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 20 398183 398183 G A RBCK1 Missense_Mutation p.V61M 0.15 deleterious(0.02) benign(0.414) TCGA-69-7979-01 20 42694471 42694471 C A TOX2 Missense_Mutation p.D360E 0.25 tolerated(0.1) benign(0.022) TCGA-69-7979-01 20 42694472 42694472 C A TOX2 Missense_Mutation p.L361M 0.26 tolerated(0.12) probably_damaging(0.949) TCGA-69-7979-01 20 42788415 42788415 C A JPH2 Nonsense_Mutation p.E338* 0.28 TCGA-69-7979-01 20 44586501 44586501 C A ZNF335 Missense_Mutation p.G774C 0.29 deleterious(0) possibly_damaging(0.895) TCGA-69-7979-01 20 44640873 44640873 C A MMP9 Silent p.G365G 0.24 TCGA-69-7979-01 20 44670121 44670121 C A SLC12A5 Silent p.T359T 0.12 TCGA-69-7979-01 20 45002998 45002998 A G ELMO2 Missense_Mutation p.C418R 0.30 deleterious(0) probably_damaging(0.994) TCGA-69-7979-01 20 45130332 45130335 CATT - ZNF334 Frame_Shift_Del p.E548Vfs*11 0.26 TCGA-69-7979-01 20 45132981 45132981 C A ZNF334 Intron 0.36 TCGA-69-7979-01 20 47248856 47248856 C G PREX1 Silent p.A1495A 0.37 TCGA-69-7979-01 20 47688901 47688901 G T CSE1L Missense_Mutation p.D283Y 0.12 deleterious(0) probably_damaging(0.996) TCGA-69-7979-01 20 48098610 48098611 - C KCNB1 Frame_Shift_Ins p.Y137Lfs*15 0.14 TCGA-69-7979-01 20 50405641 50405641 G A SALL4 Missense_Mutation p.P834L 0.18 deleterious(0.02) probably_damaging(0.997) TCGA-69-7979-01 20 50408418 50408418 G A SALL4 Missense_Mutation p.P202S 0.33 tolerated(0.53) benign(0.004) TCGA-69-7979-01 20 51872754 51872754 G T TSHZ2 Missense_Mutation p.M919I 0.29 tolerated(0.21) probably_damaging(0.958) TCGA-69-7979-01 20 54978523 54978523 G T CSTF1 Splice_Site p.X346_splice 0.10 TCGA-69-7979-01 20 55033543 55033543 G A CASS4 Missense_Mutation p.E701K 0.09 deleterious(0) probably_damaging(0.936) TCGA-69-7979-01 20 56140139 56140139 C A PCK1 Silent p.V454V 0.38 TCGA-69-7979-01 20 57392720 57392720 G A MIR296 RNA 0.38 TCGA-69-7979-01 20 57599101 57599101 C A TUBB1 Missense_Mutation p.L207I 0.36 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-69-7979-01 20 58349461 58349461 G T PHACTR3 Nonsense_Mutation p.E364* 0.38 TCGA-69-7979-01 20 60498695 60498695 C A CDH4 Missense_Mutation p.P521T 0.31 tolerated(0.08) benign(0.068) TCGA-69-7979-01 20 61511721 61511721 C A DIDO1 Missense_Mutation p.V1863L 0.26 benign(0.002) TCGA-69-7979-01 20 62316902 62316902 G T RTEL1 Missense_Mutation p.E430D 0.35 tolerated(0.12) benign(0.043) TCGA-69-7979-01 20 62737845 62737845 C A NPBWR2 Nonsense_Mutation p.E114* 0.39 TCGA-69-7979-01 20 8628601 8628601 G T PLCB1 Splice_Site p.X173_splice 0.33 TCGA-69-7979-01 20 8705364 8705364 A G PLCB1 Missense_Mutation p.Q548R 0.41 deleterious(0) possibly_damaging(0.879) TCGA-69-7979-01 20 896565 896565 G C ANGPT4 Missense_Mutation p.T98R 0.44 deleterious(0) probably_damaging(0.978) TCGA-69-7979-01 20 9417690 9417690 C T PLCB4 Silent p.D873D 0.36 TCGA-69-7979-01 20 9417735 9417735 G C PLCB4 Missense_Mutation p.Q888H 0.28 tolerated(0.12) possibly_damaging(0.88) TCGA-69-7979-01 21 11038893 11038893 C G BAGE2 RNA 0.13 TCGA-69-7979-01 21 27141346 27141346 G T GABPA Missense_Mutation p.V390F 0.12 deleterious(0) probably_damaging(1) TCGA-69-7979-01 21 28210442 28210442 G T ADAMTS1 Missense_Mutation p.T787N 0.26 deleterious(0.02) probably_damaging(1) TCGA-69-7979-01 21 31655201 31655201 G C KRTAP24-1 Missense_Mutation p.T17S 0.35 tolerated(0.59) benign(0.042) TCGA-69-7979-01 21 31709991 31709991 C A KRTAP27-1 5'UTR 0.28 TCGA-69-7979-01 21 31802693 31802693 G A KRTAP13-4 Missense_Mutation p.A34T 0.29 tolerated(0.29) benign(0.158) TCGA-69-7979-01 21 34011221 34011221 C A SYNJ1 Silent p.P1343P 0.26 TCGA-69-7979-01 21 34876758 34876758 G A GART Silent p.T934T 0.08 TCGA-69-7979-01 21 37602857 37602857 G T DOPEY2 Missense_Mutation p.G592V 0.37 deleterious(0.04) possibly_damaging(0.887) TCGA-69-7979-01 21 43533708 43533708 G T UMODL1 Missense_Mutation p.M838I 0.17 tolerated(0.32) benign(0) TCGA-69-7979-01 21 45012209 45012209 C A HSF2BP Silent p.V231V 0.45 TCGA-69-7979-01 21 45391372 45391372 G A AGPAT3 Splice_Site p.X256_splice 0.31 TCGA-69-7979-01 21 46011404 46011404 G C KRTAP10-6 Missense_Mutation p.P321R 0.29 deleterious(0.04) probably_damaging(0.995) TCGA-69-7979-01 21 46281178 46281178 C G PTTG1IP Missense_Mutation p.W59C 0.36 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 21 46281179 46281179 C A PTTG1IP Missense_Mutation p.W59L 0.36 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 21 47537845 47537845 G T COL6A2 Missense_Mutation p.G371C 0.28 deleterious(0.04) possibly_damaging(0.641) TCGA-69-7979-01 21 47648502 47648502 C A LSS Missense_Mutation p.R9L 0.40 deleterious(0.01) possibly_damaging(0.747) TCGA-69-7979-01 22 21800462 21800462 G A HIC2 Missense_Mutation p.M426I 0.05 tolerated(0.35) benign(0) TCGA-69-7979-01 22 22842749 22842749 C A ZNF280B Silent p.V325V 0.33 TCGA-69-7979-01 22 22869518 22869518 T A ZNF280A Missense_Mutation p.Q146L 0.39 deleterious(0.05) possibly_damaging(0.83) TCGA-69-7979-01 22 23047026 23047026 G T IGLV3-22 Nonsense_Mutation p.E22* 0.20 TCGA-69-7979-01 22 24086753 24086753 C A ZNF70 Missense_Mutation p.G192V 0.29 deleterious(0.01) probably_damaging(1) TCGA-69-7979-01 22 25313649 25313649 C G SGSM1 Missense_Mutation p.L1040V 0.24 deleterious(0.02) benign(0.079) TCGA-69-7979-01 22 26688796 26688796 C A SEZ6L Silent p.I173I 0.56 TCGA-69-7979-01 22 26997914 26997914 C A CRYBB1 Silent p.G168G 0.22 TCGA-69-7979-01 22 28315111 28315111 C G PITPNB Intron 0.17 TCGA-69-7979-01 22 39112036 39112036 C T GTPBP1 Silent p.R143R 0.25 TCGA-69-7979-01 22 42462723 42462723 G A NAGA Silent p.L196L 0.67 TCGA-69-7979-01 22 50925326 50925326 G T MIOX 5'UTR 0.41 TCGA-69-7979-01 2 100919430 100919430 G A LONRF2 Missense_Mutation p.L292F 0.23 deleterious(0.03) possibly_damaging(0.796) TCGA-69-7979-01 2 102493590 102493590 G A MAP4K4 Missense_Mutation p.V978I 0.24 tolerated_low_confidence(0.11) possibly_damaging(0.823) TCGA-69-7979-01 2 103095360 103095360 G T SLC9A4 Missense_Mutation p.G107W 0.23 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 2 105858591 105858591 C G GPR45 Silent p.A92A 0.23 TCGA-69-7979-01 2 108499191 108499191 G A RGPD4 Missense_Mutation p.V1710M 0.32 deleterious_low_confidence(0.05) possibly_damaging(0.6) TCGA-69-7979-01 2 111691150 111691150 G T ACOXL Silent p.G330G 0.29 TCGA-69-7979-01 2 114257446 114257446 C T FOXD4L1 Missense_Mutation p.R205C 0.52 deleterious(0) probably_damaging(0.995) TCGA-69-7979-01 2 11738002 11738002 C T GREB1 Nonsense_Mutation p.Q684* 0.46 TCGA-69-7979-01 2 118854143 118854143 G T INSIG2 Missense_Mutation p.G4V 0.11 tolerated_low_confidence(0.31) benign(0) TCGA-69-7979-01 2 121555036 121555036 C T GLI2 Missense_Mutation p.A47V 0.25 tolerated_low_confidence(0.09) benign(0.054) TCGA-69-7979-01 2 124783285 124783285 C A CNTNAP5 Missense_Mutation p.H20N 0.13 tolerated(1) benign(0.094) TCGA-69-7979-01 2 125204374 125204374 C G CNTNAP5 Missense_Mutation p.L260V 0.08 tolerated(0.13) possibly_damaging(0.859) TCGA-69-7979-01 2 127453597 127453597 G T GYPC Missense_Mutation p.G89V 0.45 deleterious(0) probably_damaging(0.998) TCGA-69-7979-01 2 128399715 128399715 T A LIMS2 Missense_Mutation p.H214L 0.20 deleterious(0.04) probably_damaging(0.994) TCGA-69-7979-01 2 128471188 128471188 C A WDR33 Missense_Mutation p.D1093Y 0.25 deleterious_low_confidence(0) possibly_damaging(0.449) TCGA-69-7979-01 2 128525865 128525865 C A WDR33 Silent p.L92L 0.21 TCGA-69-7979-01 2 128699529 128699529 C A SAP130 3'UTR 0.42 TCGA-69-7979-01 2 130737898 130737898 G T RAB6C Silent p.A70A 0.22 TCGA-69-7979-01 2 130900037 130900037 C G CCDC74B Intron 0.34 TCGA-69-7979-01 2 132010559 132010559 C G POTEE Missense_Mutation p.N555K 0.13 deleterious_low_confidence(0) benign(0.403) TCGA-69-7979-01 2 132021875 132021875 C A POTEE Silent p.T949T 0.05 TCGA-69-7979-01 2 132275298 132275298 A T AC093838.4 Splice_Site 0.30 TCGA-69-7979-01 2 132290642 132290642 G T CCDC74A Missense_Mutation p.C336F 0.12 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 2 136567175 136567175 G T LCT Silent p.S914S 0.35 TCGA-69-7979-01 2 141200193 141200193 C A LRP1B Splice_Site p.X3432_splice 0.61 TCGA-69-7979-01 2 141245234 141245234 G T LRP1B Silent p.P3065P 0.14 TCGA-69-7979-01 2 152470889 152470889 T A NEB Silent p.V3834V 0.27 TCGA-69-7979-01 2 152727095 152727095 G A CACNB4 Missense_Mutation p.P217S 0.20 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 2 15358896 15358896 C A NBAS Splice_Site p.X2144_splice 0.24 TCGA-69-7979-01 2 168104332 168104332 C T XIRP2 Missense_Mutation p.P2144S 0.41 benign(0.01) TCGA-69-7979-01 2 168107597 168107597 G T XIRP2 Missense_Mutation p.R3232M 0.38 possibly_damaging(0.539) TCGA-69-7979-01 2 170606185 170606185 G C KLHL23 Silent p.V540V 0.43 TCGA-69-7979-01 2 178080913 178080913 G T HNRNPA3 Missense_Mutation p.V184F 0.48 deleterious(0) possibly_damaging(0.452) TCGA-69-7979-01 2 179622524 179622524 T A TTN Missense_Mutation p.R3475W 0.16 TCGA-69-7979-01 2 183850938 183850938 T C NCKAP1 Missense_Mutation p.N328S 0.35 tolerated(0.75) benign(0.012) TCGA-69-7979-01 2 187627530 187627530 C T FAM171B Missense_Mutation p.P821S 0.33 deleterious(0) probably_damaging(1) TCGA-69-7979-01 2 187692887 187692887 C A ZSWIM2 Missense_Mutation p.D576Y 0.40 deleterious(0) probably_damaging(0.937) TCGA-69-7979-01 2 189870086 189870086 G A COL3A1 Missense_Mutation p.G981E 0.29 probably_damaging(1) TCGA-69-7979-01 2 189923234 189923234 C A COL5A2 Missense_Mutation p.G717V 0.18 unknown(0) TCGA-69-7979-01 2 189943295 189943295 C A COL5A2 Missense_Mutation p.G336C 0.13 probably_damaging(0.999) TCGA-69-7979-01 2 192543389 192543389 G A NABP1 Missense_Mutation p.G17R 0.46 deleterious(0) possibly_damaging(0.867) TCGA-69-7979-01 2 197184400 197184400 C A HECW2 Missense_Mutation p.R405M 0.60 tolerated_low_confidence(0.22) benign(0.233) TCGA-69-7979-01 2 198281514 198281514 T C SF3B1 Missense_Mutation p.Q206R 0.37 tolerated(0.24) benign(0.001) TCGA-69-7979-01 2 198368021 198368021 C T HSPE1 3'UTR 0.34 TCGA-69-7979-01 2 198631311 198631311 C A BOLL Missense_Mutation p.S178I 0.14 tolerated(0.09) probably_damaging(0.947) TCGA-69-7979-01 2 200137080 200137080 C G SATB2 Missense_Mutation p.V686L 0.45 tolerated(0.16) benign(0.289) TCGA-69-7979-01 2 200137217 200137217 G A SATB2 Missense_Mutation p.P640L 0.13 deleterious(0) probably_damaging(0.996) TCGA-69-7979-01 2 202598062 202598062 C A ALS2 Missense_Mutation p.L839F 0.33 tolerated(0.11) benign(0.278) TCGA-69-7979-01 2 203590985 203590985 C A FAM117B Missense_Mutation p.R287S 0.26 deleterious(0) probably_damaging(0.996) TCGA-69-7979-01 2 204599743 204599743 G A CD28 3'UTR 0.33 TCGA-69-7979-01 2 210561032 210561032 G T MAP2 Missense_Mutation p.D1380Y 0.13 deleterious(0) probably_damaging(1) TCGA-69-7979-01 2 210574658 210574658 G A MAP2 Missense_Mutation p.A1585T 0.34 tolerated(0.86) benign(0.011) TCGA-69-7979-01 2 219846738 219846738 G A FEV Missense_Mutation p.A123V 0.36 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 2 220286141 220286141 C A DES Missense_Mutation p.A368E 0.37 tolerated(0.18) possibly_damaging(0.454) TCGA-69-7979-01 2 220309590 220309590 G A SPEG Silent p.P174P 0.15 TCGA-69-7979-01 2 222322708 222322708 G A EPHA4 Missense_Mutation p.P441S 0.17 deleterious(0.02) probably_damaging(0.968) TCGA-69-7979-01 2 227662050 227662050 C A IRS1 Missense_Mutation p.G469C 0.59 deleterious(0) possibly_damaging(0.641) TCGA-69-7979-01 2 230670512 230670512 T A TRIP12 Missense_Mutation p.N787Y 0.20 deleterious(0) benign(0.183) TCGA-69-7979-01 2 232262571 232262571 G T B3GNT7 Missense_Mutation p.K47N 0.66 tolerated(0.18) benign(0.253) TCGA-69-7979-01 2 235950602 235950602 G A SH3BP4 Missense_Mutation p.V397M 0.40 deleterious(0.05) benign(0.259) TCGA-69-7979-01 2 241656811 241656811 G T KIF1A Silent p.S1782S 0.74 TCGA-69-7979-01 2 242611605 242611605 G C ATG4B Splice_Site p.X370_splice 0.20 TCGA-69-7979-01 2 26257601 26257601 A T RAB10 Missense_Mutation p.I42L 0.15 deleterious(0.02) benign(0.276) TCGA-69-7979-01 2 27688304 27688304 C A IFT172 Missense_Mutation p.E637D 0.12 tolerated(0.09) benign(0.086) TCGA-69-7979-01 2 29052092 29052092 G A SPDYA Nonsense_Mutation p.W153* 0.35 TCGA-69-7979-01 2 31147654 31147654 C T GALNT14 Missense_Mutation p.R401H 0.65 tolerated(0.41) benign(0.005) TCGA-69-7979-01 2 32339791 32339791 G T SPAST Missense_Mutation p.G256V 0.35 tolerated(0.15) benign(0.019) TCGA-69-7979-01 2 37035700 37035700 G T VIT Missense_Mutation p.R492L 0.31 deleterious(0) probably_damaging(0.995) TCGA-69-7979-01 2 37143295 37143295 C G STRN Splice_Site p.X113_splice 0.16 TCGA-69-7979-01 2 40656320 40656320 T A SLC8A1 Missense_Mutation p.Q367H 0.32 deleterious(0.01) probably_damaging(0.993) TCGA-69-7979-01 2 42281215 42281215 C T PKDCC Missense_Mutation p.H268Y 0.10 deleterious(0.04) possibly_damaging(0.463) TCGA-69-7979-01 2 45600 45600 C T FAM110C Silent p.R262R 0.35 TCGA-69-7979-01 2 50699499 50699499 G A NRXN1 Missense_Mutation p.R1101W 0.43 deleterious(0) probably_damaging(1) TCGA-69-7979-01 2 50724470 50724470 C A NRXN1 Splice_Site p.X1000_splice 0.30 TCGA-69-7979-01 2 50724471 50724471 C A NRXN1 Missense_Mutation p.G1000V 0.31 deleterious(0) probably_damaging(0.99) TCGA-69-7979-01 2 58315571 58315571 G T VRK2 Missense_Mutation p.G147V 0.29 deleterious(0) probably_damaging(0.998) TCGA-69-7979-01 2 61719812 61719812 C A XPO1 Missense_Mutation p.G486C 0.24 deleterious(0.04) probably_damaging(0.992) TCGA-69-7979-01 2 64069245 64069245 A T UGP2 5'UTR 0.18 TCGA-69-7979-01 2 65541010 65541010 C G SPRED2 Silent p.R294R 0.40 TCGA-69-7979-01 2 66667699 66667699 C T MEIS1 Silent p.R129R 0.17 TCGA-69-7979-01 2 70454899 70454899 T A TIA1 Silent p.I122I 0.13 TCGA-69-7979-01 2 70915236 70915236 G T ADD2 Missense_Mutation p.H290N 0.12 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 2 71043262 71043262 G A CLEC4F Silent p.A417A 0.29 TCGA-69-7979-01 2 71160101 71160101 C T VAX2 Missense_Mutation p.H214Y 0.14 tolerated(0.94) benign(0.243) TCGA-69-7979-01 2 71615812 71615812 G A ZNF638 Intron 0.23 TCGA-69-7979-01 2 74042687 74042687 C G C2orf78 Missense_Mutation p.T446R 0.18 tolerated(0.1) probably_damaging(0.991) TCGA-69-7979-01 2 74460634 74460634 C A SLC4A5 Missense_Mutation p.W830C 0.21 deleterious(0) probably_damaging(1) TCGA-69-7979-01 2 75115061 75115061 G T HK2 Missense_Mutation p.G751C 0.55 deleterious(0) probably_damaging(1) TCGA-69-7979-01 2 75276838 75276838 G T TACR1 Silent p.G315G 0.23 TCGA-69-7979-01 2 79385466 79385466 G A REG3A Missense_Mutation p.H107Y 0.32 tolerated(0.1) benign(0.216) TCGA-69-7979-01 2 85581606 85581606 G A RETSAT Silent p.L9L 0.29 TCGA-69-7979-01 2 8871203 8871203 C T KIDINS220 Missense_Mutation p.E1655K 0.14 deleterious_low_confidence(0) benign(0.426) TCGA-69-7979-01 2 89100757 89100757 G T ANKRD36BP2 RNA 0.17 TCGA-69-7979-01 2 89278152 89278154 AGG TT IGKV3-7 Frame_Shift_Del p.P61Kfs*? 0.16 TCGA-69-7979-01 2 89339748 89339748 G T IGKV1-12 Nonsense_Mutation p.Y108* 0.16 TCGA-69-7979-01 2 89416898 89416898 T A IGKV1-17 Missense_Mutation p.T96S 0.30 deleterious(0.05) possibly_damaging(0.858) TCGA-69-7979-01 2 89513148 89513148 T A IGKV1-27 Silent p.V37V 0.17 TCGA-69-7979-01 2 90139321 90139321 C A IGKV1D-16 Missense_Mutation p.S31Y 0.19 deleterious(0) benign(0.312) TCGA-69-7979-01 2 90139327 90139327 T A IGKV1D-16 Missense_Mutation p.L33Q 0.14 deleterious(0.01) benign(0.114) TCGA-69-7979-01 2 90212207 90212207 C A IGKV3D-11 Missense_Mutation p.P100H 0.23 deleterious(0.02) benign(0.045) TCGA-69-7979-01 2 96801132 96801132 G T ASTL Silent p.T67T 0.23 TCGA-69-7979-01 2 97377718 97377718 G A LMAN2L Silent p.L195L 0.19 TCGA-69-7979-01 2 97427781 97427781 G T CNNM4 Nonsense_Mutation p.E349* 0.16 TCGA-69-7979-01 2 97428027 97428027 G C CNNM4 Missense_Mutation p.D431H 0.21 deleterious(0) probably_damaging(0.95) TCGA-69-7979-01 2 97749915 97749915 C A FAHD2B Missense_Mutation p.W262L 0.53 tolerated(0.08) probably_damaging(0.968) TCGA-69-7979-01 2 97845666 97845666 G A ANKRD36 Silent p.G577G 0.06 TCGA-69-7979-01 3 100002604 100002604 G T TBC1D23 Missense_Mutation p.R142L 0.25 deleterious(0.04) benign(0.086) TCGA-69-7979-01 3 100951682 100951682 T C IMPG2 Missense_Mutation p.D1059G 0.39 deleterious(0.01) benign(0.013) TCGA-69-7979-01 3 107097304 107097304 C G CCDC54 Silent p.T290T 0.36 TCGA-69-7979-01 3 107435487 107435487 G T BBX Missense_Mutation p.D66Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 3 107474505 107474505 G T BBX Missense_Mutation p.A296S 0.21 deleterious(0.04) probably_damaging(0.998) TCGA-69-7979-01 3 111312891 111312891 C A ZBED2 Missense_Mutation p.R53L 0.71 tolerated(0.29) benign(0.206) TCGA-69-7979-01 3 113082370 113082370 C G WDR52 Missense_Mutation p.E909Q 0.11 deleterious(0.01) probably_damaging(0.986) TCGA-69-7979-01 3 115529219 115529219 G T LSAMP Missense_Mutation p.A321D 0.60 tolerated(0.45) unknown(0) TCGA-69-7979-01 3 119120938 119120938 G T ARHGAP31 Missense_Mutation p.A447S 0.27 tolerated(1) possibly_damaging(0.556) TCGA-69-7979-01 3 119305482 119305482 C G ADPRH Missense_Mutation p.L217V 0.25 tolerated(0.55) benign(0.046) TCGA-69-7979-01 3 12195177 12195177 C A TIMP4 Silent p.S171S 0.23 TCGA-69-7979-01 3 122422783 122422783 G T PARP14 Silent p.V1092V 0.46 TCGA-69-7979-01 3 123009977 123009977 T A ADCY5 Missense_Mutation p.I1104F 0.54 tolerated(0.05) probably_damaging(0.999) TCGA-69-7979-01 3 124438037 124438037 G T RP11-71H17.7 5'Flank 0.58 TCGA-69-7979-01 3 125879714 125879714 C A ALDH1L1 Nonsense_Mutation p.G47* 0.68 TCGA-69-7979-01 3 129247931 129247931 C A RHO Missense_Mutation p.L119M 0.41 deleterious(0.03) benign(0.29) TCGA-69-7979-01 3 130284032 130284032 G T COL6A6 Missense_Mutation p.G286C 0.07 deleterious(0.05) probably_damaging(1) TCGA-69-7979-01 3 130290147 130290147 A T COL6A6 Missense_Mutation p.S963C 0.16 deleterious(0) possibly_damaging(0.859) TCGA-69-7979-01 3 132295848 132295848 C A ACAD11 Nonsense_Mutation p.G596* 0.45 TCGA-69-7979-01 3 134851755 134851755 G C EPHB1 Silent p.T387T 0.44 TCGA-69-7979-01 3 137749854 137749854 C A CLDN18 Silent p.A219A 0.40 TCGA-69-7979-01 3 138762888 138762888 C T PRR23C Missense_Mutation p.G192D 0.15 tolerated(0.1) possibly_damaging(0.831) TCGA-69-7979-01 3 138763051 138763051 C A PRR23C Nonsense_Mutation p.E138* 0.27 TCGA-69-7979-01 3 139236369 139236369 C T RBP1 3'UTR 0.29 TCGA-69-7979-01 3 14199836 14199836 T A XPC Missense_Mutation p.D516V 0.25 tolerated(0.06) benign(0.183) TCGA-69-7979-01 3 142681339 142681339 G C PAQR9 Silent p.R280R 0.37 TCGA-69-7979-01 3 147114119 147114119 C A ZIC4 Missense_Mutation p.D120Y 0.28 deleterious(0) probably_damaging(0.936) TCGA-69-7979-01 3 14744727 14744727 G T C3orf20 Missense_Mutation p.C279F 0.29 deleterious(0) probably_damaging(1) TCGA-69-7979-01 3 148596478 148596478 G T CPA3 Missense_Mutation p.M139I 0.14 deleterious(0.04) benign(0.338) TCGA-69-7979-01 3 150342671 150342671 G C SELT Missense_Mutation p.E150Q 0.42 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 3 151166556 151166556 T C IGSF10 Missense_Mutation p.K405E 0.58 deleterious(0.03) benign(0.061) TCGA-69-7979-01 3 151474901 151474901 C A AADACL2 Missense_Mutation p.T242N 0.23 deleterious(0.01) possibly_damaging(0.836) TCGA-69-7979-01 3 158531838 158531838 G - MFSD1 Frame_Shift_Del p.I262Sfs*4 0.25 TCGA-69-7979-01 3 16217079 16217079 G T GALNT15 Missense_Mutation p.G141W 0.32 deleterious(0.01) benign(0.019) TCGA-69-7979-01 3 164755784 164755784 C A SI Missense_Mutation p.R777L 0.29 tolerated(0.65) benign(0.007) TCGA-69-7979-01 3 164907904 164907904 C T SLITRK3 Missense_Mutation p.E239K 0.24 deleterious(0) possibly_damaging(0.524) TCGA-69-7979-01 3 165548127 165548127 A C BCHE Missense_Mutation p.V232G 0.42 deleterious(0) probably_damaging(0.993) TCGA-69-7979-01 3 167272470 167272470 C A WDR49 Splice_Site p.X256_splice 0.30 TCGA-69-7979-01 3 167272471 167272471 C A WDR49 Missense_Mutation p.R256M 0.30 deleterious(0) probably_damaging(0.959) TCGA-69-7979-01 3 170244421 170244421 C A SLC7A14 Splice_Site p.X102_splice 0.31 TCGA-69-7979-01 3 170723830 170723830 C A SLC2A2 Missense_Mutation p.G226V 0.45 tolerated(0.79) benign(0.21) TCGA-69-7979-01 3 17131310 17131310 T G PLCL2 Missense_Mutation p.L971R 0.26 deleterious(0) probably_damaging(0.963) TCGA-69-7979-01 3 17131317 17131317 A T PLCL2 Missense_Mutation p.K973N 0.27 deleterious(0.02) possibly_damaging(0.675) TCGA-69-7979-01 3 179051266 179051266 C T ZNF639 Missense_Mutation p.P172S 0.23 tolerated(0.24) benign(0.335) TCGA-69-7979-01 3 179085889 179085889 G T MFN1 Nonsense_Mutation p.E325* 0.18 TCGA-69-7979-01 3 183035952 183035952 C A MCF2L2 Silent p.T219T 0.43 TCGA-69-7979-01 3 183966959 183966959 G T ALG3 5'Flank 0.28 TCGA-69-7979-01 3 184105721 184105721 G T CHRD Silent p.G818G 0.33 TCGA-69-7979-01 3 185404921 185404921 C T IGF2BP2 Missense_Mutation p.A246T 0.36 tolerated(0.07) possibly_damaging(0.734) TCGA-69-7979-01 3 186015983 186015983 C G DGKG Missense_Mutation p.R60S 0.24 tolerated(0.06) benign(0.004) TCGA-69-7979-01 3 186943279 186943279 C A MASP1 Missense_Mutation p.R525L 0.29 tolerated(0.08) benign(0.072) TCGA-69-7979-01 3 190347153 190347153 G C IL1RAP Missense_Mutation p.R306T 0.14 tolerated(0.41) benign(0.001) TCGA-69-7979-01 3 19190172 19190172 G T KCNH8 5'UTR 0.23 TCGA-69-7979-01 3 193044810 193044810 C A ATP13A5 Missense_Mutation p.G500W 0.09 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 3 193052756 193052756 G A ATP13A5 Missense_Mutation p.S359F 0.09 tolerated(0.64) possibly_damaging(0.908) TCGA-69-7979-01 3 19436773 19436773 G C KCNH8 Missense_Mutation p.E383Q 0.28 deleterious(0.04) benign(0.211) TCGA-69-7979-01 3 19559530 19559530 G T KCNH8 Missense_Mutation p.E861D 0.24 tolerated(0.08) probably_damaging(0.99) TCGA-69-7979-01 3 19559531 19559531 G T KCNH8 Nonsense_Mutation p.E862* 0.24 TCGA-69-7979-01 3 19921297 19921297 C A EFHB Splice_Site p.X777_splice 0.20 TCGA-69-7979-01 3 19961394 19961394 G T EFHB Nonsense_Mutation p.Y309* 0.32 TCGA-69-7979-01 3 26751087 26751087 G A LRRC3B 5'UTR 0.30 TCGA-69-7979-01 3 38080861 38080861 C A DLEC1 Missense_Mutation p.L49I 0.20 deleterious_low_confidence(0.04) benign(0.14) TCGA-69-7979-01 3 38318925 38318925 G T SLC22A13 Missense_Mutation p.G542V 0.13 deleterious(0.02) benign(0.008) TCGA-69-7979-01 3 38627394 38627394 G T SCN5A Missense_Mutation p.Q859K 0.40 deleterious(0) probably_damaging(0.989) TCGA-69-7979-01 3 38797433 38797433 C T SCN10A Missense_Mutation p.G436E 0.44 tolerated(0.08) benign(0.252) TCGA-69-7979-01 3 39226888 39226888 G T XIRP1 Missense_Mutation p.P1350H 0.13 tolerated(0.12) benign(0.003) TCGA-69-7979-01 3 41268746 41268746 G T CTNNB1 Missense_Mutation p.M328I 0.24 tolerated(0.14) benign(0.033) TCGA-69-7979-01 3 49006063 49006066 GCTA TT ARIH2 Frame_Shift_Del p.R212Lfs*31 0.24 TCGA-69-7979-01 3 49050635 49050635 G T WDR6 Silent p.G586G 0.47 TCGA-69-7979-01 3 49723312 49723312 C A MST1 Nonsense_Mutation p.E411* 0.08 TCGA-69-7979-01 3 50330259 50330259 C T IFRD2 5'Flank 0.16 TCGA-69-7979-01 3 51864437 51864437 C A IQCF3 Missense_Mutation p.H29N 0.29 tolerated(0.41) benign(0) TCGA-69-7979-01 3 51897349 51897349 C T IQCF2 Missense_Mutation p.T153I 0.30 deleterious(0) probably_damaging(0.965) TCGA-69-7979-01 3 51897388 51897388 G T IQCF2 3'UTR 0.27 TCGA-69-7979-01 3 53852965 53852965 C T CHDH Missense_Mutation p.E456K 0.12 deleterious(0.03) benign(0.41) TCGA-69-7979-01 3 55504405 55504405 C A WNT5A Missense_Mutation p.Q286H 0.24 tolerated(0.14) possibly_damaging(0.759) TCGA-69-7979-01 3 56779345 56779345 C A ARHGEF3 Missense_Mutation p.W285L 0.21 deleterious(0.03) benign(0.412) TCGA-69-7979-01 3 57643458 57643458 T A DENND6A Missense_Mutation p.D256V 0.50 tolerated(0.28) benign(0.017) TCGA-69-7979-01 3 58739589 58739589 C A C3orf67 Missense_Mutation p.D496Y 0.45 deleterious(0) possibly_damaging(0.891) TCGA-69-7979-01 3 63965832 63965832 C T ATXN7 Silent p.P247P 0.45 TCGA-69-7979-01 3 64636690 64636690 T A ADAMTS9 Intron 0.35 TCGA-69-7979-01 3 71804037 71804037 G T GPR27 Missense_Mutation p.E279D 0.41 deleterious(0.02) probably_damaging(0.996) TCGA-69-7979-01 3 73432837 73432837 G T PDZRN3 Missense_Mutation p.D960E 0.24 deleterious(0) probably_damaging(1) TCGA-69-7979-01 3 73433149 73433149 G T PDZRN3 Silent p.G856G 0.30 TCGA-69-7979-01 3 74334466 74334466 G A CNTN3 Silent p.T898T 0.40 TCGA-69-7979-01 3 78676697 78676697 G A ROBO1 Missense_Mutation p.P1217S 0.25 deleterious(0.03) possibly_damaging(0.902) TCGA-69-7979-01 3 87039778 87039778 G T VGLL3 Missense_Mutation p.P39H 0.38 tolerated(0.14) benign(0.004) TCGA-69-7979-01 3 88040761 88040761 G T HTR1F Nonsense_Mutation p.E288* 0.14 TCGA-69-7979-01 3 9027553 9027553 C A SRGAP3 Missense_Mutation p.V984F 0.09 deleterious(0) benign(0.329) TCGA-69-7979-01 3 93629474 93629474 C A PROS1 Missense_Mutation p.S112I 0.64 deleterious(0) benign(0.336) TCGA-69-7979-01 3 9787290 9787290 C T BRPF1 Silent p.P1034P 0.18 TCGA-69-7979-01 4 10089384 10089384 A C WDR1 Missense_Mutation p.Y300D 0.27 tolerated(0.11) probably_damaging(0.917) TCGA-69-7979-01 4 104510946 104510946 G T TACR3 Missense_Mutation p.P431T 0.50 tolerated(0.24) benign(0.003) TCGA-69-7979-01 4 10492136 10492136 G T CLNK Missense_Mutation p.H414Q 0.59 deleterious(0) benign(0.071) TCGA-69-7979-01 4 10542187 10542187 G T CLNK Missense_Mutation p.P178H 0.39 deleterious(0) probably_damaging(0.994) TCGA-69-7979-01 4 108566003 108566003 C A PAPSS1 Silent p.V487V 0.54 TCGA-69-7979-01 4 108955554 108955554 C T HADH 3'UTR 0.58 TCGA-69-7979-01 4 109664968 109664968 C G ETNPPL Missense_Mutation p.E450Q 0.19 tolerated_low_confidence(0.07) benign(0.09) TCGA-69-7979-01 4 111441168 111441168 A C ENPEP Missense_Mutation p.Y505S 0.19 deleterious(0) probably_damaging(0.994) TCGA-69-7979-01 4 119234375 119234375 C T PRSS12 Silent p.E490E 0.19 TCGA-69-7979-01 4 119951001 119951001 G T SYNPO2 Silent p.R357R 0.17 TCGA-69-7979-01 4 122853735 122853735 G A TRPC3 Silent p.D226D 0.47 TCGA-69-7979-01 4 123249264 123249264 A T KIAA1109 Silent p.P3667P 0.31 TCGA-69-7979-01 4 123275169 123275169 G T KIAA1109 Nonsense_Mutation p.E4768* 0.27 TCGA-69-7979-01 4 126242604 126242604 C A FAT4 Missense_Mutation p.L1680I 0.25 possibly_damaging(0.564) TCGA-69-7979-01 4 128865093 128865093 G C MFSD8 Missense_Mutation p.L85V 0.21 deleterious(0.02) benign(0.424) TCGA-69-7979-01 4 138450964 138450964 G T PCDH18 Missense_Mutation p.T760K 0.23 tolerated(0.06) possibly_damaging(0.694) TCGA-69-7979-01 4 142641718 142641718 G T IL15 Missense_Mutation p.G37C 0.24 tolerated(0.39) probably_damaging(0.983) TCGA-69-7979-01 4 143181714 143181714 C A INPP4B Missense_Mutation p.A207S 0.24 tolerated(0.32) benign(0.007) TCGA-69-7979-01 4 143235911 143235911 C G INPP4B Missense_Mutation p.R126P 0.09 tolerated(0.14) benign(0.017) TCGA-69-7979-01 4 156135578 156135578 C T NPY2R Nonsense_Mutation p.R163* 0.16 TCGA-69-7979-01 4 157693838 157693838 C A PDGFC Missense_Mutation p.V235L 0.21 tolerated(0.22) benign(0.118) TCGA-69-7979-01 4 157999268 157999269 - T GLRB Frame_Shift_Ins p.K31Nfs*27 0.12 TCGA-69-7979-01 4 174254282 174254282 G A HMGB2 Silent p.Y78Y 0.19 TCGA-69-7979-01 4 176556089 176556089 A T GPM6A Silent p.T268T 0.21 TCGA-69-7979-01 4 183594351 183594351 C A TENM3 Silent p.G435G 0.42 TCGA-69-7979-01 4 187454987 187454987 C A MTNR1A Missense_Mutation p.R303S 0.37 deleterious(0.01) possibly_damaging(0.762) TCGA-69-7979-01 4 187455293 187455293 G T MTNR1A Silent p.I201I 0.08 TCGA-69-7979-01 4 187540189 187540189 C A FAT1 Silent p.T2517T 0.08 TCGA-69-7979-01 4 189012581 189012581 G C TRIML2 Missense_Mutation p.D370E 0.26 tolerated(0.1) probably_damaging(0.911) TCGA-69-7979-01 4 189022368 189022368 C A TRIML2 Nonsense_Mutation p.E58* 0.19 TCGA-69-7979-01 4 189060977 189060977 G T TRIML1 Nonsense_Mutation p.E89* 0.18 TCGA-69-7979-01 4 23803857 23803857 G T PPARGC1A Silent p.R711R 0.14 TCGA-69-7979-01 4 38696400 38696400 G T KLF3 Missense_Mutation p.K243N 0.81 deleterious(0.02) possibly_damaging(0.671) TCGA-69-7979-01 4 39439400 39439400 G T KLB Missense_Mutation p.D464Y 0.55 deleterious(0) probably_damaging(0.998) TCGA-69-7979-01 4 46307700 46307700 A T GABRA2 Nonsense_Mutation p.Y196* 0.34 TCGA-69-7979-01 4 47560043 47560043 C G ATP10D Missense_Mutation p.D729E 0.19 deleterious(0.01) probably_damaging(1) TCGA-69-7979-01 4 47887962 47887962 G T NFXL1 Missense_Mutation p.T533K 0.24 deleterious(0) possibly_damaging(0.585) TCGA-69-7979-01 4 55569912 55569912 A C KIT Missense_Mutation p.N260T 0.05 tolerated(0.57) benign(0.003) TCGA-69-7979-01 4 55569935 55569935 A T KIT Missense_Mutation p.N268Y 0.05 tolerated(0.2) benign(0.011) TCGA-69-7979-01 4 55955613 55955613 A G KDR Missense_Mutation p.I1111T 0.39 deleterious(0) probably_damaging(0.998) TCGA-69-7979-01 4 57193875 57193875 C A KIAA1211 Missense_Mutation p.P1203T 0.78 deleterious(0) possibly_damaging(0.803) TCGA-69-7979-01 4 57209774 57209774 T C AASDH Missense_Mutation p.H910R 0.85 tolerated(0.21) benign(0.002) TCGA-69-7979-01 4 5961248 5961248 G T C4orf50 Missense_Mutation p.P703T 0.44 tolerated(0.78) benign(0.167) TCGA-69-7979-01 4 5966832 5966832 G T C4orf50 Silent p.L640L 0.61 TCGA-69-7979-01 4 6087218 6087218 G T JAKMIP1 Silent p.R255R 0.43 TCGA-69-7979-01 4 62775382 62775382 C A LPHN3 Missense_Mutation p.D596E 0.29 tolerated(1) benign(0.016) TCGA-69-7979-01 4 62845314 62845314 G C LPHN3 Missense_Mutation p.V879L 0.25 tolerated(0.06) benign(0.079) TCGA-69-7979-01 4 66467698 66467698 G T EPHA5 Missense_Mutation p.R191S 0.24 deleterious(0) probably_damaging(0.992) TCGA-69-7979-01 4 70823285 70823285 G T CSN2 Missense_Mutation p.P128T 0.20 tolerated(0.24) possibly_damaging(0.908) TCGA-69-7979-01 4 70866591 70866591 C - STATH Frame_Shift_Del p.P39Lfs*33 0.17 TCGA-69-7979-01 4 71347339 71347339 C T MUC7 Missense_Mutation p.A293V 0.21 tolerated(0.14) unknown(0) TCGA-69-7979-01 4 71532178 71532178 G T IGJ Silent p.V10V 0.31 TCGA-69-7979-01 4 74285969 74285969 A T ALB Splice_Site p.X596_splice 0.12 TCGA-69-7979-01 4 81124650 81124650 C A PRDM8 Silent p.R678R 0.25 TCGA-69-7979-01 4 82369326 82369326 C A RASGEF1B Missense_Mutation p.R184L 0.22 deleterious(0.01) benign(0.282) TCGA-69-7979-01 4 85600130 85600130 G A WDFY3 Silent p.P3363P 0.40 TCGA-69-7979-01 4 88967893 88967893 G T PKD2 Silent p.L473L 0.44 TCGA-69-7979-01 4 90874432 90874432 G T MMRN1 Missense_Mutation p.D1184Y 0.29 deleterious(0) probably_damaging(0.995) TCGA-69-7979-01 4 94031940 94031940 C A GRID2 Missense_Mutation p.Q191K 0.19 tolerated(0.42) possibly_damaging(0.796) TCGA-69-7979-01 4 94750358 94750358 C A ATOH1 Missense_Mutation p.A94E 0.33 tolerated_low_confidence(0.1) benign(0.002) TCGA-69-7979-01 5 102611760 102611760 C A C5orf30 Missense_Mutation p.T47N 0.81 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-69-7979-01 5 1083932 1083932 C G SLC12A7 Missense_Mutation p.D353H 0.09 deleterious(0.01) probably_damaging(0.935) TCGA-69-7979-01 5 11346711 11346711 G T CTNND2 Silent p.V467V 0.50 TCGA-69-7979-01 5 114548064 114548064 C G PGGT1B 3'UTR 0.87 TCGA-69-7979-01 5 118454634 118454634 A G DMXL1 Missense_Mutation p.I290V 0.39 tolerated(1) benign(0) TCGA-69-7979-01 5 126676315 126676315 G T MEGF10 Missense_Mutation p.M104I 0.27 tolerated(0.73) benign(0) TCGA-69-7979-01 5 126860329 126860329 A G PRRC1 Silent p.A70A 0.32 TCGA-69-7979-01 5 127507432 127507432 G A SLC12A2 Missense_Mutation p.G933R 0.23 tolerated(0.27) possibly_damaging(0.517) TCGA-69-7979-01 5 127674724 127674724 G A FBN2 Missense_Mutation p.L1125F 0.54 deleterious(0) probably_damaging(0.997) TCGA-69-7979-01 5 128442668 128442668 G T ISOC1 Silent p.L221L 0.59 TCGA-69-7979-01 5 129520678 129520678 G T CHSY3 Missense_Mutation p.G615W 0.50 deleterious(0.02) benign(0.001) TCGA-69-7979-01 5 132197523 132197523 G A GDF9 Missense_Mutation p.H375Y 0.60 deleterious(0.02) possibly_damaging(0.908) TCGA-69-7979-01 5 135583384 135583384 G T TRPC7 Nonsense_Mutation p.S540* 0.21 TCGA-69-7979-01 5 13820519 13820519 C A DNAH5 Missense_Mutation p.M2259I 0.11 benign(0.072) TCGA-69-7979-01 5 139739818 139739818 C A SLC4A9 5'UTR 0.29 TCGA-69-7979-01 5 139938160 139938160 C T APBB3 3'UTR 0.17 TCGA-69-7979-01 5 140188676 140188676 G T PCDHA4 Missense_Mutation p.R635L 0.57 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-69-7979-01 5 140203548 140203548 G T PCDHA5 Missense_Mutation p.V730L 0.26 tolerated_low_confidence(0.1) benign(0.008) TCGA-69-7979-01 5 140235843 140235843 C T PCDHA10 Silent p.H70H 0.10 TCGA-69-7979-01 5 140503780 140503780 C A PCDHB4 Missense_Mutation p.H734N 0.51 deleterious_low_confidence(0.03) benign(0.033) TCGA-69-7979-01 5 140503984 140503984 C G PCDHB4 3'UTR 0.69 TCGA-69-7979-01 5 140559855 140559855 C T PCDHB8 Missense_Mutation p.S747F 0.57 deleterious_low_confidence(0) benign(0.204) TCGA-69-7979-01 5 140604692 140604692 C A PCDHB14 Missense_Mutation p.P539T 0.49 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-69-7979-01 5 140604693 140604693 C A PCDHB14 Missense_Mutation p.P539Q 0.50 deleterious_low_confidence(0) probably_damaging(1) TCGA-69-7979-01 5 140605138 140605138 C T PCDHB14 Silent p.T687T 0.55 TCGA-69-7979-01 5 140616031 140616031 G T PCDHB18 RNA 0.60 TCGA-69-7979-01 5 140682577 140682577 C A SLC25A2 Missense_Mutation p.A286S 0.38 tolerated(0.07) possibly_damaging(0.835) TCGA-69-7979-01 5 140793565 140793565 G T PCDHGA10 Nonsense_Mutation p.E275* 0.37 TCGA-69-7979-01 5 141028864 141028864 G T FCHSD1 Missense_Mutation p.N129K 0.52 deleterious(0.02) benign(0.017) TCGA-69-7979-01 5 141049520 141049520 C A ARAP3 Missense_Mutation p.V740L 0.50 deleterious(0.01) benign(0.252) TCGA-69-7979-01 5 1416254 1416254 G T SLC6A3 Silent p.I330I 0.08 TCGA-69-7979-01 5 14358360 14358360 A T TRIO Missense_Mutation p.Q707L 0.08 benign(0.004) TCGA-69-7979-01 5 145239474 145239474 C A GRXCR2 Missense_Mutation p.G190V 0.77 deleterious(0.04) probably_damaging(0.954) TCGA-69-7979-01 5 145239475 145239475 C A GRXCR2 Missense_Mutation p.G190W 0.80 deleterious(0) probably_damaging(0.997) TCGA-69-7979-01 5 148407657 148407657 C A SH3TC2 Missense_Mutation p.Q546H 0.84 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 5 148407765 148407765 G A SH3TC2 Silent p.Y510Y 0.09 TCGA-69-7979-01 5 150102501 150102501 C T DCTN4 Silent p.T299T 0.66 TCGA-69-7979-01 5 150948228 150948228 C A FAT2 Missense_Mutation p.V89L 0.64 possibly_damaging(0.801) TCGA-69-7979-01 5 151771640 151771640 C A NMUR2 3'UTR 0.80 TCGA-69-7979-01 5 156934148 156934148 C A ADAM19 Silent p.T302T 0.54 TCGA-69-7979-01 5 158140043 158140043 C G EBF1 Missense_Mutation p.G435A 0.40 tolerated_low_confidence(0.09) benign(0.091) TCGA-69-7979-01 5 15928310 15928310 C A FBXL7 Missense_Mutation p.L147M 0.27 deleterious(0.01) benign(0.436) TCGA-69-7979-01 5 169126459 169126459 C A DOCK2 Missense_Mutation p.Q377K 0.37 deleterious(0.03) possibly_damaging(0.889) TCGA-69-7979-01 5 169474605 169474605 C A DOCK2 Missense_Mutation p.P1353H 0.53 deleterious(0) probably_damaging(0.998) TCGA-69-7979-01 5 169593 169593 C A PLEKHG4B Missense_Mutation p.H849Q 0.15 deleterious(0.03) benign(0.292) TCGA-69-7979-01 5 169675711 169675711 C A LCP2 Missense_Mutation p.G531V 0.43 deleterious(0) benign(0.424) TCGA-69-7979-01 5 17354348 17354348 C A CTD-2139B15.2 RNA 0.49 TCGA-69-7979-01 5 177474047 177474047 G A FAM153C Silent p.K120K 0.44 TCGA-69-7979-01 5 177548132 177548132 G T N4BP3 Nonsense_Mutation p.E296* 0.67 TCGA-69-7979-01 5 177683396 177683396 C T COL23A1 Silent p.G280G 0.58 TCGA-69-7979-01 5 19591217 19591217 G T CDH18 Missense_Mutation p.F316L 0.13 deleterious(0.02) benign(0.311) TCGA-69-7979-01 5 23521206 23521206 A C PRDM9 Silent p.A142A 0.12 TCGA-69-7979-01 5 23521208 23521208 G T PRDM9 Missense_Mutation p.S143I 0.12 deleterious_low_confidence(0) benign(0.114) TCGA-69-7979-01 5 31294321 31294321 A G CDH6 Missense_Mutation p.K161E 0.09 tolerated(0.36) benign(0.001) TCGA-69-7979-01 5 33576397 33576397 G C ADAMTS12 Missense_Mutation p.A1245G 0.08 tolerated(0.38) benign(0.003) TCGA-69-7979-01 5 33577045 33577045 G T ADAMTS12 Missense_Mutation p.P1029H 0.11 tolerated(0.05) benign(0.041) TCGA-69-7979-01 5 33577047 33577047 C A ADAMTS12 Missense_Mutation p.R1028S 0.34 tolerated(1) benign(0) TCGA-69-7979-01 5 35988627 35988627 G T UGT3A1 Silent p.R41R 0.19 TCGA-69-7979-01 5 3601195 3601195 G C IRX1 3'UTR 0.17 TCGA-69-7979-01 5 38438429 38438429 T A EGFLAM Missense_Mutation p.V779E 0.18 deleterious(0.01) probably_damaging(0.958) TCGA-69-7979-01 5 39341729 39341729 C A C9 Missense_Mutation p.R86L 0.37 deleterious(0.04) benign(0.059) TCGA-69-7979-01 5 39377316 39377316 G A DAB2 Missense_Mutation p.P525S 0.24 tolerated(0.67) benign(0.004) TCGA-69-7979-01 5 41005013 41005013 C - MROH2B Frame_Shift_Del p.E1292Nfs*14 0.13 TCGA-69-7979-01 5 42711463 42711463 C A GHR Missense_Mutation p.T258K 0.29 tolerated(0.95) benign(0.055) TCGA-69-7979-01 5 45645491 45645491 C A HCN1 Missense_Mutation p.M215I 0.15 tolerated(0.36) probably_damaging(0.968) TCGA-69-7979-01 5 50685659 50685659 C T ISL1 Missense_Mutation p.L220F 0.49 deleterious(0) probably_damaging(0.989) TCGA-69-7979-01 5 5146311 5146311 C G ADAMTS16 Missense_Mutation p.H82D 0.09 tolerated(0.16) benign(0.158) TCGA-69-7979-01 5 6738808 6738808 G T PAPD7 Missense_Mutation p.G35C 0.10 deleterious(0) probably_damaging(1) TCGA-69-7979-01 5 6738809 6738809 G T PAPD7 Missense_Mutation p.G35V 0.10 deleterious(0) probably_damaging(1) TCGA-69-7979-01 5 7835549 7835549 C A C5orf49 Missense_Mutation p.L70F 0.33 deleterious(0) probably_damaging(0.984) TCGA-69-7979-01 5 82940343 82940343 C A HAPLN1 Missense_Mutation p.C205F 0.55 deleterious(0) probably_damaging(1) TCGA-69-7979-01 5 840743 840743 C A ZDHHC11 Missense_Mutation p.W217C 0.02 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 5 89923460 89923460 G T GPR98 Nonsense_Mutation p.G369* 0.56 TCGA-69-7979-01 5 9629753 9629753 A G TAS2R1 Missense_Mutation p.L131P 0.09 deleterious(0) probably_damaging(0.998) TCGA-69-7979-01 6 101098455 101098455 C G ASCC3 Missense_Mutation p.D1071H 0.18 deleterious(0.01) probably_damaging(0.972) TCGA-69-7979-01 6 10907786 10907786 C A SYCP2L Missense_Mutation p.Q230K 0.24 deleterious(0) probably_damaging(0.994) TCGA-69-7979-01 6 10955441 10955441 G T SYCP2L Nonsense_Mutation p.E683* 0.45 TCGA-69-7979-01 6 11104926 11104926 C A ERVFRD-1 Missense_Mutation p.W206C 0.11 deleterious(0) benign(0.001) TCGA-69-7979-01 6 112397166 112397166 C A TUBE1 Silent p.V262V 0.45 TCGA-69-7979-01 6 119234474 119234474 C A MCM9 Missense_Mutation p.G339V 0.11 deleterious(0) probably_damaging(0.998) TCGA-69-7979-01 6 119234475 119234475 C G MCM9 Missense_Mutation p.G339R 0.11 deleterious(0) probably_damaging(0.998) TCGA-69-7979-01 6 125598374 125598374 G T HDDC2 Missense_Mutation p.Q131K 0.22 tolerated(0.05) benign(0.444) TCGA-69-7979-01 6 129371169 129371169 C G LAMA2 Silent p.V73V 0.73 TCGA-69-7979-01 6 129905164 129905164 C A ARHGAP18 Missense_Mutation p.D603Y 0.17 deleterious(0) probably_damaging(0.992) TCGA-69-7979-01 6 133849945 133849945 T A EYA4 3'UTR 0.18 TCGA-69-7979-01 6 135763846 135763846 G T AHI1 Missense_Mutation p.R596S 0.26 deleterious(0) possibly_damaging(0.875) TCGA-69-7979-01 6 136599313 136599313 G T BCLAF1 Missense_Mutation p.P236T 0.06 tolerated_low_confidence(0.21) possibly_damaging(0.803) TCGA-69-7979-01 6 138584486 138584486 G T KIAA1244 Silent p.S622S 0.37 TCGA-69-7979-01 6 139094796 139094796 C A CCDC28A 5'UTR 0.17 TCGA-69-7979-01 6 1391252 1391252 C A FOXF2 Missense_Mutation p.P357H 0.28 deleterious(0.02) benign(0.001) TCGA-69-7979-01 6 149847910 149847910 C A PPIL4 Silent p.V227V 0.36 TCGA-69-7979-01 6 150001332 150001332 C A LATS1 Missense_Mutation p.A758S 0.56 deleterious(0.04) probably_damaging(0.98) TCGA-69-7979-01 6 150001333 150001333 C A LATS1 Silent p.L757L 0.56 TCGA-69-7979-01 6 151789865 151789865 G T C6orf211 Missense_Mutation p.G316W 0.21 deleterious(0) probably_damaging(1) TCGA-69-7979-01 6 152461191 152461191 C A SYNE1 Missense_Mutation p.S8451I 0.35 benign(0.384) TCGA-69-7979-01 6 154360825 154360825 G T OPRM1 Missense_Mutation p.R142L 0.12 tolerated(0.15) benign(0.01) TCGA-69-7979-01 6 155123231 155123231 G T SCAF8 Missense_Mutation p.A245S 0.24 tolerated(0.05) unknown(0) TCGA-69-7979-01 6 155485672 155485672 C A TIAM2 Missense_Mutation p.R718S 0.59 deleterious(0) probably_damaging(0.992) TCGA-69-7979-01 6 159654060 159654060 G A FNDC1 Missense_Mutation p.R839Q 0.29 tolerated_low_confidence(0.08) unknown(0) TCGA-69-7979-01 6 160978583 160978583 C A LPA Missense_Mutation p.C1551F 0.09 deleterious(0) probably_damaging(0.961) TCGA-69-7979-01 6 161032738 161032738 C A LPA Missense_Mutation p.R820M 0.14 tolerated_low_confidence(0.11) probably_damaging(0.989) TCGA-69-7979-01 6 161574506 161574506 C T AGPAT4 Missense_Mutation p.R179Q 0.18 deleterious(0.02) probably_damaging(0.991) TCGA-69-7979-01 6 163735984 163735984 G T PACRG Missense_Mutation p.V286L 0.28 tolerated(0.08) benign(0.01) TCGA-69-7979-01 6 165715301 165715301 T C C6orf118 Silent p.G170G 0.49 TCGA-69-7979-01 6 165808689 165808689 G T PDE10A Silent p.R496R 0.61 TCGA-69-7979-01 6 166796374 166796374 G A MPC1 5'UTR 0.12 TCGA-69-7979-01 6 169620428 169620428 A T THBS2 Missense_Mutation p.L1126I 0.20 tolerated(0.1) benign(0.078) TCGA-69-7979-01 6 170626895 170626895 G T FAM120B Silent p.V139V 0.62 TCGA-69-7979-01 6 24134569 24134569 G T NRSN1 Missense_Mutation p.S5I 0.24 deleterious(0.01) benign(0.026) TCGA-69-7979-01 6 24466969 24466969 T C GPLD1 Missense_Mutation p.M254V 0.23 deleterious(0) benign(0.118) TCGA-69-7979-01 6 24473860 24473860 C T GPLD1 Silent p.S159S 0.27 TCGA-69-7979-01 6 24503613 24503613 G T ALDH5A1 Silent p.R187R 0.10 TCGA-69-7979-01 6 25820093 25820093 G T SLC17A1 Silent p.S86S 0.29 TCGA-69-7979-01 6 26033395 26033395 G T HIST1H2AB 3'UTR 0.32 TCGA-69-7979-01 6 26087578 26087578 A G HFE 5'UTR 0.29 TCGA-69-7979-01 6 26246947 26246947 C A HIST1H4G Missense_Mutation p.V87L 0.20 deleterious(0) benign(0.273) TCGA-69-7979-01 6 26271399 26271399 C A HIST1H3G Missense_Mutation p.V72L 0.54 deleterious_low_confidence(0.03) probably_damaging(0.953) TCGA-69-7979-01 6 26271400 26271400 C T HIST1H3G Silent p.L71L 0.54 TCGA-69-7979-01 6 26501506 26501506 G T BTN1A1 5'UTR 0.36 TCGA-69-7979-01 6 27107209 27107209 G T HIST1H4I Missense_Mutation p.R41L 0.23 deleterious_low_confidence(0.03) probably_damaging(0.953) TCGA-69-7979-01 6 2896343 2896343 A G SERPINB9 Missense_Mutation p.Y84H 0.09 deleterious(0.05) possibly_damaging(0.691) TCGA-69-7979-01 6 29394919 29394919 A T OR11A1 Missense_Mutation p.L167Q 0.19 deleterious(0.01) probably_damaging(0.924) TCGA-69-7979-01 6 29640988 29640988 G T ZFP57 Silent p.T300T 0.19 TCGA-69-7979-01 6 30043110 30043110 C A RNF39 Missense_Mutation p.V153L 0.39 tolerated(0.18) benign(0.007) TCGA-69-7979-01 6 31132966 31132966 C A POU5F1 Missense_Mutation p.C252F 0.32 deleterious(0) probably_damaging(0.951) TCGA-69-7979-01 6 31644673 31644674 AG - LY6G5C 3'UTR 0.16 TCGA-69-7979-01 6 31948260 31948260 G T STK19 Missense_Mutation p.R283L 0.07 deleterious(0.02) probably_damaging(0.994) TCGA-69-7979-01 6 32943210 32943210 G C BRD2 Missense_Mutation p.R128T 0.21 deleterious(0) possibly_damaging(0.503) TCGA-69-7979-01 6 33154373 33154373 C A COL11A2 Intron 0.19 TCGA-69-7979-01 6 33756206 33756206 A C LEMD2 Missense_Mutation p.W230G 0.21 tolerated(0.05) possibly_damaging(0.641) TCGA-69-7979-01 6 36275460 36275460 G T PNPLA1 Silent p.S522S 0.53 TCGA-69-7979-01 6 40400618 40400618 C T LRFN2 Missense_Mutation p.V79M 0.07 deleterious(0) probably_damaging(1) TCGA-69-7979-01 6 41177456 41177456 G A TREML3P RNA 0.30 TCGA-69-7979-01 6 43268951 43268951 C T SLC22A7 Silent p.A302A 0.32 TCGA-69-7979-01 6 43550832 43550832 C - POLH Frame_Shift_Del p.L76Yfs*24 0.22 TCGA-69-7979-01 6 44151460 44151460 A T CAPN11 Missense_Mutation p.D718V 0.18 deleterious(0) probably_damaging(0.994) TCGA-69-7979-01 6 44217272 44217272 G T HSP90AB1 Missense_Mutation p.L102F 0.10 deleterious(0.02) probably_damaging(0.997) TCGA-69-7979-01 6 46660099 46660099 C G TDRD6 Missense_Mutation p.P1412A 0.42 deleterious(0) probably_damaging(1) TCGA-69-7979-01 6 46977116 46977116 C A GPR110 Silent p.R685R 0.39 TCGA-69-7979-01 6 4892414 4892414 G T CDYL Missense_Mutation p.E164D 0.33 tolerated(0.56) benign(0.003) TCGA-69-7979-01 6 49574909 49574909 T A RHAG Silent p.A364A 0.46 TCGA-69-7979-01 6 49585844 49585844 G T RHAG Silent p.I143I 0.32 TCGA-69-7979-01 6 49937287 49937287 G T DEFB113 Missense_Mutation p.P18T 0.30 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-69-7979-01 6 51497494 51497494 G T PKHD1 Missense_Mutation p.P3845Q 0.11 deleterious(0.04) benign(0.031) TCGA-69-7979-01 6 51497495 51497495 G T PKHD1 Missense_Mutation p.P3845T 0.11 tolerated(0.16) benign(0.007) TCGA-69-7979-01 6 51824798 51824798 C A PKHD1 Silent p.R1926R 0.10 TCGA-69-7979-01 6 51824799 51824799 C A PKHD1 Missense_Mutation p.R1926L 0.11 tolerated(0.7) benign(0.004) TCGA-69-7979-01 6 53370601 53370601 C A GCLC Missense_Mutation p.E430D 0.40 deleterious(0.04) possibly_damaging(0.666) TCGA-69-7979-01 6 55196546 55196546 C - GFRAL Frame_Shift_Del p.Q20Kfs*8 0.25 TCGA-69-7979-01 6 55223780 55223780 G T GFRAL Missense_Mutation p.D266Y 0.34 deleterious(0) probably_damaging(0.997) TCGA-69-7979-01 6 56880067 56880067 C T BEND6 Silent p.A145A 0.05 TCGA-69-7979-01 6 56918819 56918819 C A KIAA1586 Missense_Mutation p.H508N 0.09 tolerated(0.93) benign(0) TCGA-69-7979-01 6 6182293 6182293 T A F13A1 Nonsense_Mutation p.K463* 0.28 TCGA-69-7979-01 6 64356431 64356431 G T PHF3 Splice_Site 0.21 TCGA-69-7979-01 6 66094311 66094311 C T EYS Missense_Mutation p.E423K 0.16 tolerated(0.12) benign(0.034) TCGA-69-7979-01 6 70897903 70897903 C A COL19A1 Missense_Mutation p.P994H 0.22 deleterious(0) probably_damaging(1) TCGA-69-7979-01 6 70991092 70991092 C T COL9A1 Splice_Site p.X292_splice 0.38 TCGA-69-7979-01 6 71567765 71567766 - T SMAP1 Frame_Shift_Ins p.M370Hfs*39 0.28 TCGA-69-7979-01 6 72086704 72086704 C A MIR30C2 RNA 0.27 TCGA-69-7979-01 6 7231817 7231817 G T RREB1 Missense_Mutation p.R1162L 0.20 tolerated(0.08) benign(0.15) TCGA-69-7979-01 6 73904621 73904621 C A KCNQ5 Silent p.P780P 0.04 TCGA-69-7979-01 6 74063703 74063703 G T DPPA5 Silent p.L55L 0.07 TCGA-69-7979-01 6 74407146 74407146 C T CD109 Missense_Mutation p.P33L 0.70 deleterious(0) probably_damaging(0.997) TCGA-69-7979-01 6 76744391 76744391 C G IMPG1 Missense_Mutation p.D139H 0.03 deleterious(0) probably_damaging(0.994) TCGA-69-7979-01 6 8064638 8064638 C T BLOC1S5 5'UTR 0.33 TCGA-69-7979-01 6 80837296 80837296 G T BCKDHB Missense_Mutation p.V77L 0.13 tolerated(0.06) benign(0.009) TCGA-69-7979-01 6 83851639 83851639 G C DOPEY1 Splice_Site p.X1806_splice 0.19 TCGA-69-7979-01 6 85446745 85446745 G T TBX18 Silent p.P494P 0.47 TCGA-69-7979-01 6 85457652 85457652 A T TBX18 Missense_Mutation p.Y309N 0.67 deleterious(0) probably_damaging(0.998) TCGA-69-7979-01 6 86253015 86253015 C A SNX14 Missense_Mutation p.G425V 0.47 deleterious(0) probably_damaging(0.969) TCGA-69-7979-01 6 88391356 88391356 T A AKIRIN2 Missense_Mutation p.S121C 0.55 tolerated(0.09) benign(0.01) TCGA-69-7979-01 7 100190515 100190515 G A FBXO24 Missense_Mutation p.C261Y 0.14 deleterious_low_confidence(0) benign(0.384) TCGA-69-7979-01 7 100200023 100200023 T G PCOLCE 5'UTR 0.33 TCGA-69-7979-01 7 100391493 100391493 C T ZAN Intron 0.13 TCGA-69-7979-01 7 100417243 100417243 C A EPHB4 Silent p.G411G 0.37 TCGA-69-7979-01 7 100454619 100454619 C T SLC12A9 Missense_Mutation p.S193L 0.12 deleterious(0) benign(0.304) TCGA-69-7979-01 7 100675448 100675448 G T MUC17 Missense_Mutation p.A251S 0.38 benign(0.003) TCGA-69-7979-01 7 100732770 100732770 G A TRIM56 Missense_Mutation p.R726Q 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-69-7979-01 7 103237094 103237094 C T RELN Silent p.Q1116Q 0.41 TCGA-69-7979-01 7 103629665 103629665 C A RELN Nonsense_Mutation p.E47* 0.30 TCGA-69-7979-01 7 107434951 107434951 T A SLC26A3 Missense_Mutation p.I2F 0.50 deleterious(0.01) possibly_damaging(0.563) TCGA-69-7979-01 7 107615733 107615733 C A LAMB1 Missense_Mutation p.V439F 0.20 tolerated(0.7) benign(0.003) TCGA-69-7979-01 7 107698324 107698324 C A LAMB4 Missense_Mutation p.S1111I 0.23 tolerated(0.06) possibly_damaging(0.683) TCGA-69-7979-01 7 113519092 113519092 C A PPP1R3A Silent p.V685V 0.20 TCGA-69-7979-01 7 113519322 113519322 C A PPP1R3A Missense_Mutation p.A609S 0.30 tolerated(0.58) benign(0.003) TCGA-69-7979-01 7 116960808 116960808 G A WNT2 Silent p.C41C 0.27 TCGA-69-7979-01 7 121650577 121650577 G T PTPRZ1 Missense_Mutation p.G493C 0.38 deleterious(0.03) possibly_damaging(0.606) TCGA-69-7979-01 7 121651867 121651867 G T PTPRZ1 Missense_Mutation p.G923W 0.26 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-69-7979-01 7 122635505 122635505 C A TAS2R16 Missense_Mutation p.A62S 0.07 tolerated(0.13) benign(0.02) TCGA-69-7979-01 7 128369990 128369990 C A FAM71F1 Nonsense_Mutation p.C296* 0.45 TCGA-69-7979-01 7 128485009 128485009 G T FLNC Missense_Mutation p.G1164C 0.27 deleterious(0) probably_damaging(1) TCGA-69-7979-01 7 128851597 128851597 C G SMO Missense_Mutation p.P641R 0.35 tolerated(0.09) probably_damaging(0.933) TCGA-69-7979-01 7 129855931 129855931 T G SSMEM1 Missense_Mutation p.L119W 0.52 deleterious(0) probably_damaging(0.938) TCGA-69-7979-01 7 132481247 132481247 C A CHCHD3 Missense_Mutation p.A206S 0.53 tolerated(0.88) benign(0.009) TCGA-69-7979-01 7 133859350 133859350 A C LRGUK Missense_Mutation p.I328L 0.18 tolerated(1) benign(0.001) TCGA-69-7979-01 7 135312828 135312828 G T NUP205 Missense_Mutation p.S1634I 0.11 tolerated(0.25) benign(0.139) TCGA-69-7979-01 7 136936025 136936025 C A PTN Missense_Mutation p.V135F 0.42 deleterious(0) probably_damaging(0.985) TCGA-69-7979-01 7 137363300 137363300 C A DGKI Intron 0.26 TCGA-69-7979-01 7 140227246 140227246 C A DENND2A Missense_Mutation p.A793S 0.35 tolerated(0.48) benign(0.007) TCGA-69-7979-01 7 142020943 142020943 G T TRBV5-1 Splice_Site p.X17_splice 0.29 TCGA-69-7979-01 7 142168389 142168389 T C TRBV5-4 Missense_Mutation p.S112G 0.10 deleterious(0) probably_damaging(0.984) TCGA-69-7979-01 7 142176611 142176611 C A TRBV7-4 Missense_Mutation p.G22V 0.06 deleterious(0) probably_damaging(0.987) TCGA-69-7979-01 7 142223873 142223873 G T TRBV11-1 Silent p.I98I 0.17 TCGA-69-7979-01 7 142364552 142364552 C A TRBV24-1 Silent p.R63R 0.23 TCGA-69-7979-01 7 142499050 142499050 G T TRBC2 Missense_Mutation p.W109C 0.16 deleterious(0) probably_damaging(1) TCGA-69-7979-01 7 142562423 142562423 G A EPHB6 Missense_Mutation p.E289K 0.28 deleterious(0) benign(0.41) TCGA-69-7979-01 7 142566477 142566477 C A EPHB6 Missense_Mutation p.L756M 0.18 deleterious(0) probably_damaging(1) TCGA-69-7979-01 7 142612722 142612722 C A TRPV5 Missense_Mutation p.R380L 0.29 tolerated(0.63) benign(0.013) TCGA-69-7979-01 7 142639553 142639553 G A KEL Missense_Mutation p.P669S 0.16 tolerated(0.29) benign(0.084) TCGA-69-7979-01 7 142639554 142639554 G T KEL Missense_Mutation p.S668R 0.16 deleterious(0.04) benign(0.247) TCGA-69-7979-01 7 142724164 142724164 G A OR9A2 Missense_Mutation p.S19F 0.42 tolerated(0.07) probably_damaging(0.954) TCGA-69-7979-01 7 142749830 142749830 C A OR6V1 Silent p.G131G 0.08 TCGA-69-7979-01 7 142749967 142749967 G T OR6V1 Missense_Mutation p.C177F 0.29 deleterious(0) probably_damaging(1) TCGA-69-7979-01 7 142880808 142880808 C A TAS2R39 Silent p.T99T 0.34 TCGA-69-7979-01 7 143417098 143417098 G T FAM115C Nonsense_Mutation p.E316* 0.27 TCGA-69-7979-01 7 143573529 143573529 C A FAM115A Missense_Mutation p.R58L 0.35 deleterious(0) probably_damaging(0.98) TCGA-69-7979-01 7 14741333 14741333 C A DGKB Silent p.T163T 0.31 TCGA-69-7979-01 7 147869548 147869548 T C CNTNAP2 Silent p.Y996Y 0.27 TCGA-69-7979-01 7 148112563 148112563 G T CNTNAP2 Missense_Mutation p.R1284L 0.25 deleterious(0) benign(0.032) TCGA-69-7979-01 7 148454127 148454127 G T CUL1 Missense_Mutation p.W123L 0.34 deleterious(0) probably_damaging(0.994) TCGA-69-7979-01 7 148454128 148454128 G T CUL1 Missense_Mutation p.W123C 0.34 deleterious(0) probably_damaging(1) TCGA-69-7979-01 7 148892659 148892659 G T ZNF282 5'UTR 0.12 TCGA-69-7979-01 7 149493807 149493807 G T SSPO RNA 0.40 TCGA-69-7979-01 7 149518044 149518044 G A SSPO RNA 0.40 TCGA-69-7979-01 7 150649546 150649546 G T KCNH2 Missense_Mutation p.F508L 0.24 deleterious(0) benign(0.181) TCGA-69-7979-01 7 151970792 151970792 C A KMT2C Missense_Mutation p.R337I 0.08 probably_damaging(0.998) TCGA-69-7979-01 7 15433748 15433748 C A AGMO Missense_Mutation p.R222S 0.36 deleterious(0.02) probably_damaging(0.996) TCGA-69-7979-01 7 154759555 154759555 C G PAXIP1 Missense_Mutation p.D622H 0.20 deleterious(0) unknown(0) TCGA-69-7979-01 7 1608937 1608937 C A PSMG3 Silent p.T13T 0.40 TCGA-69-7979-01 7 18669011 18669011 C T HDAC9 Nonsense_Mutation p.Q235* 0.21 TCGA-69-7979-01 7 18806777 18806777 G T HDAC9 Missense_Mutation p.G738V 0.11 deleterious(0) probably_damaging(0.983) TCGA-69-7979-01 7 19015542 19015542 G T HDAC9 Missense_Mutation p.D1046Y 0.25 deleterious(0) probably_damaging(0.998) TCGA-69-7979-01 7 19035668 19035668 G T HDAC9 Nonsense_Mutation p.E1065* 0.29 TCGA-69-7979-01 7 19184801 19184801 G A FERD3L Missense_Mutation p.P62L 0.33 tolerated(0.11) benign(0.003) TCGA-69-7979-01 7 19761703 19761703 C T TMEM196 Missense_Mutation p.V172M 0.31 tolerated_low_confidence(0.14) possibly_damaging(0.781) TCGA-69-7979-01 7 19765325 19765325 G A TMEM196 Missense_Mutation p.R91W 0.11 deleterious(0) possibly_damaging(0.835) TCGA-69-7979-01 7 19765326 19765326 G A TMEM196 Silent p.L90L 0.12 TCGA-69-7979-01 7 20778742 20778742 A T ABCB5 Missense_Mutation p.S1002C 0.55 deleterious(0.02) benign(0.322) TCGA-69-7979-01 7 21789863 21789863 G T DNAH11 Missense_Mutation p.D2948Y 0.31 probably_damaging(0.923) TCGA-69-7979-01 7 21892164 21892164 C A DNAH11 Missense_Mutation p.A3666E 0.30 benign(0.261) TCGA-69-7979-01 7 22766896 22766896 C T IL6 Silent p.S5S 0.16 TCGA-69-7979-01 7 23811864 23811864 A G STK31 Silent p.R644R 0.22 TCGA-69-7979-01 7 23823238 23823238 G T STK31 Nonsense_Mutation p.E702* 0.32 TCGA-69-7979-01 7 27148329 27148329 G T HOXA3 Nonsense_Mutation p.C179* 0.32 TCGA-69-7979-01 7 27285905 27285905 C A EVX1 Missense_Mutation p.P362H 0.19 tolerated(0.17) benign(0.002) TCGA-69-7979-01 7 28997137 28997137 C A AC005013.5 5'Flank 0.27 TCGA-69-7979-01 7 29546843 29546843 G A CHN2 Splice_Site p.X331_splice 0.20 TCGA-69-7979-01 7 2968248 2968248 C A CARD11 Missense_Mutation p.D580Y 0.23 deleterious(0) probably_damaging(1) TCGA-69-7979-01 7 2998208 2998208 G T CARD11 5'UTR 0.38 TCGA-69-7979-01 7 30963294 30963294 G T AQP1 3'UTR 0.50 TCGA-69-7979-01 7 31104526 31104526 T G ADCYAP1R1 Missense_Mutation p.L44R 0.45 tolerated(0.48) possibly_damaging(0.732) TCGA-69-7979-01 7 31104527 31104527 G A ADCYAP1R1 Silent p.L44L 0.46 TCGA-69-7979-01 7 31378388 31378388 T A NEUROD6 Missense_Mutation p.L165F 0.29 deleterious(0) probably_damaging(0.961) TCGA-69-7979-01 7 31594513 31594513 C A CCDC129 Missense_Mutation p.T111N 0.31 deleterious(0.02) possibly_damaging(0.675) TCGA-69-7979-01 7 32997399 32997399 G A FKBP9 Missense_Mutation p.D72N 0.20 deleterious(0.01) possibly_damaging(0.688) TCGA-69-7979-01 7 33134984 33134984 G T RP9 Silent p.S176S 0.25 TCGA-69-7979-01 7 35242294 35242294 G T TBX20 Silent p.S364S 0.45 TCGA-69-7979-01 7 37172755 37172755 G T ELMO1 Missense_Mutation p.H391N 0.21 tolerated(0.07) benign(0.143) TCGA-69-7979-01 7 37951859 37951859 A T SFRP4 Missense_Mutation p.V218E 0.26 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 7 39991235 39991235 C G CDK13 Missense_Mutation p.S332C 0.18 deleterious(0) unknown(0) TCGA-69-7979-01 7 40102635 40102635 G T CDK13 Nonsense_Mutation p.E906* 0.30 TCGA-69-7979-01 7 41729680 41729680 C A INHBA Missense_Mutation p.E283D 0.32 tolerated(1) benign(0.02) TCGA-69-7979-01 7 41730112 41730112 C G INHBA Missense_Mutation p.E139D 0.36 tolerated(0.24) possibly_damaging(0.82) TCGA-69-7979-01 7 43508580 43508580 G T HECW1 Missense_Mutation p.R992L 0.15 deleterious(0) probably_damaging(0.956) TCGA-69-7979-01 7 45141999 45141999 C A TBRG4 Missense_Mutation p.R423L 0.29 tolerated(0.05) benign(0.015) TCGA-69-7979-01 7 45719308 45719308 G T ADCY1 Missense_Mutation p.Q633H 0.13 tolerated(0.13) probably_damaging(0.971) TCGA-69-7979-01 7 47336718 47336718 G A TNS3 Missense_Mutation p.A1213V 0.35 deleterious(0) probably_damaging(0.995) TCGA-69-7979-01 7 48353964 48353964 T C ABCA13 Silent p.L3273L 0.18 TCGA-69-7979-01 7 53104032 53104032 A G POM121L12 Missense_Mutation p.N223S 0.15 tolerated(0.21) possibly_damaging(0.494) TCGA-69-7979-01 7 55466256 55466257 - T LANCL2 Frame_Shift_Ins p.A156Gfs*13 0.16 TCGA-69-7979-01 7 5754731 5754731 C G RNF216 Missense_Mutation p.E596Q 0.41 deleterious(0.05) probably_damaging(0.997) TCGA-69-7979-01 7 6098709 6098709 C A EIF2AK1 Missense_Mutation p.Q2H 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.461) TCGA-69-7979-01 7 65157731 65157731 T A INTS4L2 RNA 0.08 TCGA-69-7979-01 7 65599298 65599298 G - CRCP Frame_Shift_Del p.R59Sfs*15 0.12 TCGA-69-7979-01 7 66270309 66270309 A G KCTD7 Missense_Mutation p.I335V 0.25 tolerated(0.09) possibly_damaging(0.512) TCGA-69-7979-01 7 70853323 70853323 C A WBSCR17 Silent p.A175A 0.29 TCGA-69-7979-01 7 72657742 72657742 C A GTF2IRD2P1 RNA 0.10 TCGA-69-7979-01 7 72892675 72892675 C G BAZ1B Missense_Mutation p.M372I 0.33 tolerated_low_confidence(1) benign(0) TCGA-69-7979-01 7 73115084 73115084 G C STX1A Silent p.V255V 0.06 TCGA-69-7979-01 7 73649961 73649961 C A RFC2 Missense_Mutation p.L285F 0.39 deleterious(0.03) possibly_damaging(0.775) TCGA-69-7979-01 7 75070254 75070254 C G POM121C Missense_Mutation p.D69H 0.06 deleterious(0) probably_damaging(0.965) TCGA-69-7979-01 7 79082357 79082357 G A MAGI2 Missense_Mutation p.R94W 0.34 deleterious(0) probably_damaging(0.91) TCGA-69-7979-01 7 79082573 79082573 T A MAGI2 Missense_Mutation p.R22W 0.06 tolerated(0.23) probably_damaging(0.998) TCGA-69-7979-01 7 81392049 81392049 C A HGF Missense_Mutation p.R76S 0.51 deleterious(0.02) benign(0.41) TCGA-69-7979-01 7 84628806 84628806 G A SEMA3D Nonsense_Mutation p.R762* 0.21 TCGA-69-7979-01 7 87133575 87133575 C G ABCB1 Missense_Mutation p.G1276A 0.24 deleterious(0) benign(0.234) TCGA-69-7979-01 7 87174223 87174223 G T ABCB1 Silent p.S660S 0.52 TCGA-69-7979-01 7 87516659 87516659 A T DBF4 Missense_Mutation p.N156Y 0.48 deleterious(0.01) probably_damaging(0.927) TCGA-69-7979-01 7 88964844 88964844 C A ZNF804B Missense_Mutation p.Q850K 0.19 tolerated(0.65) benign(0.006) TCGA-69-7979-01 7 88966269 88966269 C A ZNF804B Missense_Mutation p.H1325N 0.25 deleterious(0) benign(0.432) TCGA-69-7979-01 7 92733475 92733475 C T SAMD9 Missense_Mutation p.E646K 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-69-7979-01 7 92763448 92763448 T A SAMD9L Missense_Mutation p.N613Y 0.09 deleterious(0.01) possibly_damaging(0.583) TCGA-69-7979-01 7 93055889 93055889 C A CALCR Missense_Mutation p.V436L 0.36 tolerated(1) benign(0.016) TCGA-69-7979-01 7 94048810 94048810 G T COL1A2 Missense_Mutation p.G676C 0.34 unknown(0) TCGA-69-7979-01 7 96251933 96251933 C G RP11-682N22.1 RNA 0.32 TCGA-69-7979-01 7 96637092 96637092 C A DLX6 Silent p.A193A 0.50 TCGA-69-7979-01 7 96651436 96651436 C A DLX5 Intron 0.63 TCGA-69-7979-01 7 98249110 98249110 C A NPTX2 Missense_Mutation p.H194Q 0.10 tolerated(0.87) benign(0.01) TCGA-69-7979-01 7 98529088 98529088 G A TRRAP Missense_Mutation p.A1218T 0.19 benign(0.024) TCGA-69-7979-01 7 98556987 98556987 A T TRRAP Silent p.T2114T 0.21 TCGA-69-7979-01 7 98645414 98645414 C T SMURF1 Missense_Mutation p.E375K 0.20 tolerated(1) benign(0.001) TCGA-69-7979-01 7 99129498 99129498 C T ZKSCAN5 Missense_Mutation p.P716S 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-69-7979-01 7 99564902 99564902 G T AZGP1 Silent p.P207P 0.18 TCGA-69-7979-01 8 100732583 100732583 G T VPS13B Missense_Mutation p.G2248V 0.16 deleterious(0) benign(0.199) TCGA-69-7979-01 8 104438329 104438329 G T DCAF13 Missense_Mutation p.G294C 0.34 deleterious(0.01) possibly_damaging(0.879) TCGA-69-7979-01 8 10467857 10467857 C G RP1L1 Missense_Mutation p.E1251Q 0.35 benign(0.022) TCGA-69-7979-01 8 10468341 10468341 C T RP1L1 Silent p.L1089L 0.22 TCGA-69-7979-01 8 104897988 104897988 G T RIMS2 Missense_Mutation p.R387S 0.16 deleterious_low_confidence(0.01) probably_damaging(0.958) TCGA-69-7979-01 8 104898340 104898340 G T RIMS2 Missense_Mutation p.G505C 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-69-7979-01 8 104922615 104922615 C A RIMS2 Intron 0.20 TCGA-69-7979-01 8 104955027 104955027 A G RIMS2 Silent p.L858L 0.45 TCGA-69-7979-01 8 105456551 105456551 C A DPYS Missense_Mutation p.V240L 0.17 tolerated(0.31) benign(0.023) TCGA-69-7979-01 8 107719006 107719006 G T OXR1 Missense_Mutation p.M420I 0.41 tolerated(0.25) benign(0.001) TCGA-69-7979-01 8 108334178 108334178 G A ANGPT1 Silent p.L252L 0.17 TCGA-69-7979-01 8 110447583 110447583 G C PKHD1L1 Missense_Mutation p.G1169R 0.20 deleterious(0.01) probably_damaging(1) TCGA-69-7979-01 8 113236911 113236911 G T CSMD3 3'UTR 0.17 TCGA-69-7979-01 8 113564843 113564843 T A CSMD3 Silent p.V1447V 0.05 TCGA-69-7979-01 8 113694814 113694814 C A CSMD3 Missense_Mutation p.R845L 0.60 deleterious(0.01) probably_damaging(1) TCGA-69-7979-01 8 11643643 11643643 A T NEIL2 Missense_Mutation p.Q287L 0.18 tolerated(0.11) benign(0.022) TCGA-69-7979-01 8 116616856 116616856 T C TRPS1 Missense_Mutation p.Y447C 0.07 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-69-7979-01 8 118147622 118147622 C T SLC30A8 Missense_Mutation p.A19V 0.11 deleterious(0.02) benign(0.169) TCGA-69-7979-01 8 118165223 118165223 T A SLC30A8 Silent p.A104A 0.17 TCGA-69-7979-01 8 118819554 118819555 GC - EXT1 Frame_Shift_Del p.R595Qfs*6 0.47 TCGA-69-7979-01 8 11995977 11995977 A T USP17L2 Missense_Mutation p.L98Q 0.27 deleterious(0) probably_damaging(1) TCGA-69-7979-01 8 120233847 120233847 G T MAL2 Missense_Mutation p.W51C 0.35 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 8 121174765 121174765 C T COL14A1 Silent p.Y102Y 0.07 TCGA-69-7979-01 8 124408584 124408584 C A ATAD2 Missense_Mutation p.R5L 0.14 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-69-7979-01 8 125029950 125029951 - AGG FER1L6 In_Frame_Ins p.E670dup 0.14 TCGA-69-7979-01 8 125047562 125047562 C T FER1L6 Silent p.V777V 0.07 TCGA-69-7979-01 8 125113405 125113405 G T FER1L6 Missense_Mutation p.G1651C 0.12 deleterious(0) probably_damaging(1) TCGA-69-7979-01 8 131796023 131796023 C A ADCY8 Missense_Mutation p.C1061F 0.57 deleterious(0.01) benign(0.006) TCGA-69-7979-01 8 131922043 131922043 G A ADCY8 Silent p.C517C 0.28 TCGA-69-7979-01 8 133844551 133844551 G T PHF20L1 Missense_Mutation p.G606W 0.35 deleterious(0) possibly_damaging(0.855) TCGA-69-7979-01 8 133906138 133906138 G T TG Missense_Mutation p.G989W 0.10 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 8 134042224 134042224 G C TG Missense_Mutation p.A2399P 0.30 tolerated(0.49) benign(0.001) TCGA-69-7979-01 8 139163657 139163657 T A FAM135B Missense_Mutation p.T1021S 0.49 tolerated(0.67) benign(0.006) TCGA-69-7979-01 8 139278016 139278016 T A FAM135B Missense_Mutation p.Y76F 0.31 deleterious(0) possibly_damaging(0.741) TCGA-69-7979-01 8 140630537 140630537 G T KCNK9 Missense_Mutation p.D363E 0.23 tolerated(1) benign(0.005) TCGA-69-7979-01 8 140631105 140631105 C A KCNK9 Missense_Mutation p.G174V 0.55 deleterious(0) probably_damaging(0.974) TCGA-69-7979-01 8 140631106 140631106 C T KCNK9 Missense_Mutation p.G174R 0.54 deleterious(0) probably_damaging(0.924) TCGA-69-7979-01 8 142446053 142446053 A T PTP4A3 3'Flank 0.63 TCGA-69-7979-01 8 143747287 143747287 C G JRK RNA 0.15 TCGA-69-7979-01 8 145111988 145111988 G A OPLAH Silent p.A523A 0.70 TCGA-69-7979-01 8 145692683 145692683 G A KIFC2 Missense_Mutation p.G143E 0.13 tolerated_low_confidence(0.33) benign(0.02) TCGA-69-7979-01 8 18666362 18666362 C A PSD3 Intron 0.38 TCGA-69-7979-01 8 21996234 21996234 C A REEP4 Missense_Mutation p.R209L 0.52 tolerated(0.29) benign(0.007) TCGA-69-7979-01 8 24168935 24168935 C G ADAM28 Missense_Mutation p.T123R 0.16 deleterious(0) probably_damaging(0.979) TCGA-69-7979-01 8 24348309 24348309 C A ADAM7 Intron 0.16 TCGA-69-7979-01 8 26721982 26721982 C A ADRA1A Missense_Mutation p.A169S 0.22 tolerated(0.32) possibly_damaging(0.489) TCGA-69-7979-01 8 27528417 27528417 G T SCARA3 Missense_Mutation p.G457V 0.36 deleterious(0.01) probably_damaging(0.988) TCGA-69-7979-01 8 28573992 28573992 A T EXTL3 Missense_Mutation p.E139V 0.60 deleterious(0.01) possibly_damaging(0.661) TCGA-69-7979-01 8 28575347 28575347 C A EXTL3 Missense_Mutation p.R591S 0.37 deleterious(0) possibly_damaging(0.733) TCGA-69-7979-01 8 30537129 30537129 C G GSR Missense_Mutation p.V493L 0.41 deleterious(0) probably_damaging(0.927) TCGA-69-7979-01 8 32600215 32600215 G T NRG1 Missense_Mutation p.D219Y 0.18 deleterious(0) possibly_damaging(0.69) TCGA-69-7979-01 8 33449645 33449645 G T DUSP26 Silent p.T174T 0.26 TCGA-69-7979-01 8 35624419 35624419 G T UNC5D Splice_Site p.X772_splice 0.33 TCGA-69-7979-01 8 35624420 35624420 G T UNC5D Nonsense_Mutation p.E772* 0.33 TCGA-69-7979-01 8 38172976 38172976 C T WHSC1L1 Silent p.S691S 0.11 TCGA-69-7979-01 8 38705564 38705564 C T TACC1 3'UTR 0.22 TCGA-69-7979-01 8 39581361 39581361 C A ADAM18 Silent p.T704T 0.29 TCGA-69-7979-01 8 39602377 39602377 G A ADAM2 3'UTR 0.33 TCGA-69-7979-01 8 41166587 41166587 G T SFRP1 Missense_Mutation p.A31D 0.39 deleterious(0.03) probably_damaging(0.994) TCGA-69-7979-01 8 41397472 41397472 G T GINS4 Missense_Mutation p.A145S 0.12 deleterious(0) possibly_damaging(0.578) TCGA-69-7979-01 8 41563735 41563735 C A ANK1 Missense_Mutation p.V708L 0.17 deleterious(0.01) benign(0.167) TCGA-69-7979-01 8 42407751 42407751 A G SMIM19 Nonstop_Mutation p.*108Wext*15 0.36 TCGA-69-7979-01 8 49987894 49987894 C A C8orf22 3'UTR 0.20 TCGA-69-7979-01 8 49987895 49987895 C A C8orf22 3'UTR 0.21 TCGA-69-7979-01 8 51306825 51306825 G T SNTG1 Missense_Mutation p.E9D 0.36 tolerated(0.15) benign(0.002) TCGA-69-7979-01 8 51306826 51306826 G T SNTG1 Splice_Site p.X9_splice 0.35 TCGA-69-7979-01 8 52387649 52387649 C A PXDNL Nonsense_Mutation p.E193* 0.17 TCGA-69-7979-01 8 56015028 56015028 C T XKR4 5'UTR 0.12 TCGA-69-7979-01 8 56436146 56436146 G T XKR4 Missense_Mutation p.G438V 0.18 deleterious(0) probably_damaging(1) TCGA-69-7979-01 8 57353688 57353688 G T PENK 3'UTR 0.23 TCGA-69-7979-01 8 65517323 65517323 C T CYP7B1 Silent p.G383G 0.14 TCGA-69-7979-01 8 67803242 67803242 G C MCMDC2 Missense_Mutation p.G406R 0.27 deleterious(0) possibly_damaging(0.889) TCGA-69-7979-01 8 69012023 69012023 C G PREX2 Missense_Mutation p.A887G 0.19 tolerated(0.13) benign(0.01) TCGA-69-7979-01 8 70964382 70964382 C A PRDM14 Missense_Mutation p.S549I 0.17 deleterious(0.03) benign(0.425) TCGA-69-7979-01 8 71044133 71044133 C G NCOA2 Missense_Mutation p.R1088P 0.20 tolerated(0.06) probably_damaging(0.954) TCGA-69-7979-01 8 73848809 73848809 C A KCNB2 Missense_Mutation p.L407M 0.25 deleterious(0) probably_damaging(1) TCGA-69-7979-01 8 74941233 74941233 G T LY96 Nonsense_Mutation p.E143* 0.12 TCGA-69-7979-01 8 75233422 75233422 C T JPH1 Missense_Mutation p.G34D 0.07 deleterious(0) probably_damaging(1) TCGA-69-7979-01 8 76470801 76470801 G T HNF4G Missense_Mutation p.R251L 0.15 deleterious(0.05) benign(0.035) TCGA-69-7979-01 8 77616893 77616893 G T ZFHX4 Missense_Mutation p.Q190H 0.49 benign(0.387) TCGA-69-7979-01 8 77690499 77690499 C T ZFHX4 Missense_Mutation p.A1050V 0.06 possibly_damaging(0.682) TCGA-69-7979-01 8 77768044 77768044 G T ZFHX4 Missense_Mutation p.G2963W 0.18 probably_damaging(0.999) TCGA-69-7979-01 8 77768056 77768056 G T ZFHX4 Missense_Mutation p.G2967C 0.17 probably_damaging(0.988) TCGA-69-7979-01 8 77775885 77775885 C A ZFHX4 Missense_Mutation p.P3312Q 0.21 probably_damaging(0.997) TCGA-69-7979-01 8 80942275 80942275 T C MRPS28 Missense_Mutation p.Q70R 0.21 tolerated(0.65) benign(0) TCGA-69-7979-01 8 82373696 82373696 C A FABP9 Missense_Mutation p.M21I 0.11 deleterious(0.01) probably_damaging(0.912) TCGA-69-7979-01 8 82670728 82670728 G T CHMP4C Missense_Mutation p.R217S 0.13 deleterious(0.05) benign(0.065) TCGA-69-7979-01 8 86357418 86357418 C A CA3 Missense_Mutation p.L160I 0.24 tolerated(0.21) probably_damaging(0.997) TCGA-69-7979-01 8 87155156 87155156 A G ATP6V0D2 Silent p.T204T 0.25 TCGA-69-7979-01 8 87414324 87414324 T A WWP1 Missense_Mutation p.Y206N 0.25 tolerated(0.41) benign(0.001) TCGA-69-7979-01 8 88249151 88249151 T A CNBD1 Silent p.V194V 0.19 TCGA-69-7979-01 8 88885827 88885827 G A DCAF4L2 Missense_Mutation p.R125W 0.54 deleterious(0) probably_damaging(0.995) TCGA-69-7979-01 8 88885887 88885887 G T DCAF4L2 Silent p.R105R 0.19 TCGA-69-7979-01 8 89180196 89180196 C A MMP16 Missense_Mutation p.K137N 0.28 tolerated(0.05) possibly_damaging(0.901) TCGA-69-7979-01 8 91013692 91013692 C G DECR1 5'UTR 0.17 TCGA-69-7979-01 8 92030695 92030695 G T TMEM55A Missense_Mutation p.Q137K 0.32 tolerated(0.27) probably_damaging(0.926) TCGA-69-7979-01 8 95541571 95541571 C A KIAA1429 Splice_Site p.X203_splice 0.09 TCGA-69-7979-01 8 95782726 95782726 G C DPY19L4 Missense_Mutation p.G461R 0.36 tolerated(0.05) probably_damaging(1) TCGA-69-7979-01 8 98289911 98289911 C A TSPYL5 Missense_Mutation p.Q54H 0.20 deleterious(0.02) possibly_damaging(0.781) TCGA-69-7979-01 9 100124675 100124675 A T CCDC180 Missense_Mutation p.N1329I 0.33 tolerated(0.22) benign(0.008) TCGA-69-7979-01 9 107288700 107288700 G A OR13C4 Missense_Mutation p.S264F 0.23 deleterious(0) probably_damaging(0.954) TCGA-69-7979-01 9 111640998 111640998 C A IKBKAP Missense_Mutation p.R1202L 0.34 deleterious(0) probably_damaging(0.986) TCGA-69-7979-01 9 114875150 114875150 T C SUSD1 Splice_Site p.X296_splice 0.30 TCGA-69-7979-01 9 115805325 115805325 C G ZFP37 Missense_Mutation p.G525R 0.26 deleterious(0) benign(0.34) TCGA-69-7979-01 9 119976950 119976950 C T ASTN2 Silent p.Q234Q 0.45 TCGA-69-7979-01 9 120053748 120053748 G T ASTN2 Missense_Mutation p.Q163K 0.46 deleterious_low_confidence(0) benign(0.092) TCGA-69-7979-01 9 125391437 125391437 C A OR1B1 Silent p.V126V 0.53 TCGA-69-7979-01 9 125643034 125643034 T A RC3H2 Nonsense_Mutation p.K267* 0.28 TCGA-69-7979-01 9 125797760 125797760 T C GPR21 Silent p.S305S 0.30 TCGA-69-7979-01 9 129642150 129642150 A T ZBTB34 Missense_Mutation p.S154C 0.41 tolerated(0.1) benign(0.438) TCGA-69-7979-01 9 131087421 131087421 G T COQ4 Splice_Site p.X68_splice 0.37 TCGA-69-7979-01 9 134334683 134334683 G C PRRC2B Silent p.A448A 0.39 TCGA-69-7979-01 9 135073442 135073442 G A NTNG2 Silent p.E101E 0.46 TCGA-69-7979-01 9 135522389 135522389 C A DDX31 Missense_Mutation p.D447Y 0.45 deleterious(0) possibly_damaging(0.615) TCGA-69-7979-01 9 136444267 136444267 C A FAM163B Silent p.V126V 0.15 TCGA-69-7979-01 9 137804989 137804989 C A FCN1 Missense_Mutation p.G114V 0.29 deleterious(0.01) probably_damaging(0.952) TCGA-69-7979-01 9 139396325 139396325 G C NOTCH1 Missense_Mutation p.T1838R 0.05 tolerated(0.08) possibly_damaging(0.522) TCGA-69-7979-01 9 139396781 139396781 G C NOTCH1 Missense_Mutation p.S1776C 0.13 deleterious(0.02) possibly_damaging(0.832) TCGA-69-7979-01 9 139910499 139910499 C A ABCA2 Missense_Mutation p.D1078Y 0.48 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 9 140063358 140063358 C A LRRC26 Missense_Mutation p.G318V 0.50 tolerated_low_confidence(0.07) unknown(0) TCGA-69-7979-01 9 140137871 140137871 G C TUBB4B Missense_Mutation p.E401Q 0.33 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-69-7979-01 9 140243959 140243959 G A EXD3 Missense_Mutation p.P507S 0.32 tolerated(0.76) benign(0.03) TCGA-69-7979-01 9 140707596 140707596 G T EHMT1 Missense_Mutation p.R1002S 0.50 tolerated(0.05) benign(0.011) TCGA-69-7979-01 9 16435886 16435886 T A BNC2 Missense_Mutation p.Q769L 0.17 tolerated(0.4) benign(0.036) TCGA-69-7979-01 9 16436625 16436625 C T BNC2 Missense_Mutation p.A523T 0.52 tolerated(0.35) benign(0.127) TCGA-69-7979-01 9 18889700 18889700 C A ADAMTSL1 Missense_Mutation p.P1533T 0.18 deleterious(0.01) possibly_damaging(0.623) TCGA-69-7979-01 9 19423859 19423859 G T ACER2 Splice_Site p.X37_splice 0.35 TCGA-69-7979-01 9 21385305 21385305 C A IFNA2 Silent p.L8L 0.63 TCGA-69-7979-01 9 21440600 21440600 C A IFNA1 Missense_Mutation p.L32M 0.19 deleterious(0.01) benign(0.313) TCGA-69-7979-01 9 21481077 21481077 C T IFNE Missense_Mutation p.S206N 0.05 deleterious_low_confidence(0) benign(0.01) TCGA-69-7979-01 9 21481742 21481742 C A IFNE 5'UTR 0.61 TCGA-69-7979-01 9 35060352 35060352 C T VCP Nonsense_Mutation p.W551* 0.34 TCGA-69-7979-01 9 35093027 35093027 C A PIGO Missense_Mutation p.Q373H 0.35 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 9 35751401 35751401 G A RGP1 Missense_Mutation p.R209H 0.05 deleterious(0) possibly_damaging(0.7) TCGA-69-7979-01 9 36091208 36091208 G T RECK Missense_Mutation p.S318I 0.17 deleterious(0) benign(0.198) TCGA-69-7979-01 9 36121570 36121570 A G RECK Missense_Mutation p.Q860R 0.16 tolerated(0.43) benign(0) TCGA-69-7979-01 9 36197559 36197559 G T CLTA Nonsense_Mutation p.G77* 0.17 TCGA-69-7979-01 9 37015066 37015066 T A PAX5 Missense_Mutation p.E113V 0.21 deleterious(0) probably_damaging(1) TCGA-69-7979-01 9 43627610 43627610 G T SPATA31A6 Missense_Mutation p.H359Q 0.80 deleterious(0) possibly_damaging(0.872) TCGA-69-7979-01 9 6014811 6014811 G A RANBP6 Missense_Mutation p.T266I 0.15 tolerated(1) benign(0.023) TCGA-69-7979-01 9 71098929 71098929 G T PGM5 Missense_Mutation p.V482L 0.31 deleterious(0.05) benign(0.013) TCGA-69-7979-01 9 74305070 74305070 C A TMEM2 Silent p.T1263T 0.27 TCGA-69-7979-01 9 77300496 77300496 G T RORB Nonsense_Mutation p.E448* 0.22 TCGA-69-7979-01 9 7799591 7799591 C A TMEM261 Missense_Mutation p.W48C 0.41 deleterious(0) probably_damaging(0.991) TCGA-69-7979-01 9 79325218 79325218 C A PRUNE2 Missense_Mutation p.G658C 0.21 deleterious(0) probably_damaging(0.993) TCGA-69-7979-01 9 79936430 79936430 A C VPS13A Silent p.G1866G 0.12 TCGA-69-7979-01 9 79966231 79966231 A T VPS13A Splice_Site p.X2430_splice 0.25 TCGA-69-7979-01 9 79966273 79966273 G A VPS13A Missense_Mutation p.A2444T 0.42 deleterious(0.03) probably_damaging(0.954) TCGA-69-7979-01 9 8319939 8319939 G A PTPRD Silent p.F1854F 0.22 TCGA-69-7979-01 9 8338979 8338979 C A PTPRD Missense_Mutation p.M1774I 0.23 tolerated(0.12) possibly_damaging(0.797) TCGA-69-7979-01 9 8341975 8341975 C A PTPRD Silent p.A1555A 0.25 TCGA-69-7979-01 9 84606797 84606797 G T SPATA31D1 Missense_Mutation p.W471L 0.23 tolerated(0.07) benign(0.197) TCGA-69-7979-01 9 8521408 8521408 G T PTPRD Missense_Mutation p.T277K 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-69-7979-01 9 85619414 85619414 T G RASEF Silent p.R401R 0.25 TCGA-69-7979-01 9 85914069 85914069 G C FRMD3 Nonsense_Mutation p.S320* 0.22 TCGA-69-7979-01 9 86914506 86914506 T A SLC28A3 Missense_Mutation p.Y220F 0.34 deleterious(0.02) possibly_damaging(0.653) TCGA-69-7979-01 9 89561087 89561087 C A GAS1 Missense_Mutation p.C203F 0.53 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 9 90113982 90113982 G T DAPK1 5'UTR 0.24 TCGA-69-7979-01 9 90343659 90343659 G C CTSL Missense_Mutation p.A186P 0.33 deleterious(0.01) probably_damaging(0.979) TCGA-69-7979-01 9 90502475 90502475 C T SPATA31E1 Nonsense_Mutation p.Q1025* 0.15 TCGA-69-7979-01 9 94488836 94488836 T C ROR2 Missense_Mutation p.N458S 0.13 tolerated(0.42) benign(0) TCGA-69-7979-01 9 95610574 95610574 G C ZNF484 Missense_Mutation p.N167K 0.46 tolerated(1) benign(0.039) TCGA-69-7979-01 9 97088125 97088125 G T NUTM2F Silent p.G36G 0.43 TCGA-69-7979-01 X 100274025 100274025 C G TRMT2B Missense_Mutation p.R441S 0.23 tolerated(0.23) benign(0.016) TCGA-69-7979-01 X 100653866 100653866 C A GLA Missense_Mutation p.W236C 0.17 deleterious(0) probably_damaging(1) TCGA-69-7979-01 X 100910591 100910591 G T ARMCX2 3'UTR 0.27 TCGA-69-7979-01 X 101138656 101138656 T A ZMAT1 Missense_Mutation p.R581S 0.28 tolerated(0.37) benign(0.231) TCGA-69-7979-01 X 101911008 101911008 T A GPRASP1 Missense_Mutation p.W723R 0.10 tolerated(0.18) benign(0.007) TCGA-69-7979-01 X 101971043 101971043 G T GPRASP2 Missense_Mutation p.G416W 0.09 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 X 102192279 102192279 C T RAB40AL Silent p.Y11Y 0.15 TCGA-69-7979-01 X 102334545 102334545 C G NXF3 Missense_Mutation p.D396H 0.29 deleterious(0.03) benign(0.223) TCGA-69-7979-01 X 102471522 102471522 G T BEX4 3'UTR 0.09 TCGA-69-7979-01 X 102755633 102755633 G A RAB40A Silent p.L18L 0.12 TCGA-69-7979-01 X 102931001 102931001 T G MORF4L2 3'UTR 0.10 TCGA-69-7979-01 X 103267315 103267315 G A H2BFWT Missense_Mutation p.S166L 0.11 tolerated(0.06) benign(0.1) TCGA-69-7979-01 X 106185961 106185961 C G MORC4 Missense_Mutation p.E720D 0.08 tolerated(0.4) benign(0.003) TCGA-69-7979-01 X 107224763 107224763 G T TEX13B Silent p.G162G 0.10 TCGA-69-7979-01 X 107821562 107821562 G T COL4A5 Missense_Mutation p.Q243H 0.20 unknown(0) TCGA-69-7979-01 X 107977487 107977487 C A IRS4 Missense_Mutation p.E696D 0.10 deleterious_low_confidence(0) unknown(0) TCGA-69-7979-01 X 108673536 108673536 C A GUCY2F Missense_Mutation p.M597I 0.35 tolerated(0.07) benign(0.003) TCGA-69-7979-01 X 109931877 109931877 A - CHRDL1 Frame_Shift_Del p.P312Lfs*4 0.10 TCGA-69-7979-01 X 109964654 109964654 G A CHRDL1 Nonsense_Mutation p.Q136* 0.14 TCGA-69-7979-01 X 110495659 110495659 G T CAPN6 Missense_Mutation p.T192K 0.23 deleterious(0) benign(0.058) TCGA-69-7979-01 X 110574138 110574138 G T DCX Intron 0.22 TCGA-69-7979-01 X 112022736 112022736 A T AMOT Silent p.S882S 0.12 TCGA-69-7979-01 X 112033867 112033867 C G AMOT Silent p.V690V 0.43 TCGA-69-7979-01 X 112048220 112048220 C A AMOT Missense_Mutation p.Q577H 0.22 unknown(0) TCGA-69-7979-01 X 113965830 113965830 T G HTR2C Missense_Mutation p.W55G 0.21 deleterious(0) probably_damaging(0.998) TCGA-69-7979-01 X 114540826 114540826 G T LUZP4 Missense_Mutation p.E133D 0.16 deleterious(0.02) benign(0.182) TCGA-69-7979-01 X 117783002 117783002 G T DOCK11 Missense_Mutation p.R1498M 0.10 deleterious(0) probably_damaging(0.998) TCGA-69-7979-01 X 118239097 118239097 C T KIAA1210 Missense_Mutation p.R309H 0.17 tolerated(0.32) benign(0.073) TCGA-69-7979-01 X 119243218 119243218 T A RHOXF1 Nonsense_Mutation p.R163* 0.16 TCGA-69-7979-01 X 120182832 120182832 G C GLUD2 Missense_Mutation p.A432P 0.10 deleterious(0) possibly_damaging(0.754) TCGA-69-7979-01 X 122765684 122765684 T A THOC2 Missense_Mutation p.Q779L 0.17 deleterious(0) probably_damaging(0.925) TCGA-69-7979-01 X 123019761 123019761 C A XIAP Missense_Mutation p.H83Q 0.16 deleterious(0) probably_damaging(1) TCGA-69-7979-01 X 123514663 123514663 C A TENM1 Missense_Mutation p.R2641L 0.15 deleterious(0) possibly_damaging(0.781) TCGA-69-7979-01 X 123540185 123540185 T C TENM1 Missense_Mutation p.I1713V 0.15 tolerated(0.6) benign(0.008) TCGA-69-7979-01 X 123554636 123554636 C G TENM1 Missense_Mutation p.A1503P 0.20 deleterious(0.03) possibly_damaging(0.65) TCGA-69-7979-01 X 123637453 123637453 T A TENM1 Silent p.G1134G 0.16 TCGA-69-7979-01 X 123657476 123657476 C G TENM1 Splice_Site p.X924_splice 0.25 TCGA-69-7979-01 X 123785918 123785918 G T TENM1 Silent p.G475G 0.26 TCGA-69-7979-01 X 125298730 125298730 G T DCAF12L2 Missense_Mutation p.S393Y 0.18 tolerated(0.17) benign(0.27) TCGA-69-7979-01 X 125685959 125685959 G A DCAF12L1 Silent p.G211G 0.21 TCGA-69-7979-01 X 129474306 129474306 G T SLC25A14 Silent p.T18T 0.21 TCGA-69-7979-01 X 129759363 129759363 C A ENOX2 Missense_Mutation p.Q586H 0.34 deleterious(0) probably_damaging(0.993) TCGA-69-7979-01 X 129813550 129813550 C T ENOX2 Silent p.E171E 0.20 TCGA-69-7979-01 X 131214236 131214236 G A FRMD7 Missense_Mutation p.P322S 0.15 deleterious(0.02) probably_damaging(1) TCGA-69-7979-01 X 132161214 132161214 T G USP26 Silent p.L345L 0.16 TCGA-69-7979-01 X 132548851 132548851 G T GPC4 Missense_Mutation p.P48H 0.09 deleterious(0) probably_damaging(0.947) TCGA-69-7979-01 X 135279240 135279240 T A FHL1 Intron 0.12 TCGA-69-7979-01 X 135496331 135496331 G T GPR112 Missense_Mutation p.R3017L 0.18 deleterious(0.03) benign(0.147) TCGA-69-7979-01 X 135570598 135570598 C A BRS3 Missense_Mutation p.L109I 0.16 tolerated(0.34) benign(0.023) TCGA-69-7979-01 X 137821457 137821457 A T FGF13 Intron 0.15 TCGA-69-7979-01 X 138672050 138672050 C T MCF2 Missense_Mutation p.D848N 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-69-7979-01 X 138689896 138689896 G T MCF2 Missense_Mutation p.P558T 0.23 tolerated(0.63) benign(0.039) TCGA-69-7979-01 X 138697087 138697087 G T MCF2 Missense_Mutation p.P499H 0.22 deleterious(0) benign(0.281) TCGA-69-7979-01 X 144337566 144337566 G A SPANXN1 3'UTR 0.44 TCGA-69-7979-01 X 144904765 144904765 G T SLITRK2 Missense_Mutation p.R274S 0.17 tolerated(0.23) benign(0.158) TCGA-69-7979-01 X 144905063 144905063 C A SLITRK2 Missense_Mutation p.P374T 0.18 deleterious(0) probably_damaging(1) TCGA-69-7979-01 X 146353885 146353885 C A MIR510 RNA 0.06 TCGA-69-7979-01 X 147019024 147019024 A G FMR1 Missense_Mutation p.R344G 0.10 tolerated_low_confidence(0.24) benign(0.045) TCGA-69-7979-01 X 147062985 147062985 G T FMR1NB Silent p.V21V 0.15 TCGA-69-7979-01 X 148035269 148035269 G T AFF2 Missense_Mutation p.E519D 0.11 deleterious(0) probably_damaging(0.992) TCGA-69-7979-01 X 148035270 148035270 G T AFF2 Splice_Site p.X519_splice 0.11 TCGA-69-7979-01 X 148794808 148794808 G T MAGEA11 5'UTR 0.35 TCGA-69-7979-01 X 150348940 150348940 G T GPR50 Silent p.G295G 0.40 TCGA-69-7979-01 X 151092274 151092274 G C MAGEA4 Silent p.L46L 0.13 TCGA-69-7979-01 X 152821567 152821567 G T ATP2B3 Missense_Mutation p.D707Y 0.15 deleterious(0) probably_damaging(0.988) TCGA-69-7979-01 X 153032460 153032460 G T PLXNB3 Missense_Mutation p.A83S 0.09 deleterious(0.04) benign(0.358) TCGA-69-7979-01 X 153046802 153046802 G T SRPK3 Splice_Site p.X64_splice 0.32 TCGA-69-7979-01 X 153171744 153171744 G T AVPR2 Missense_Mutation p.V262L 0.16 deleterious(0.04) possibly_damaging(0.771) TCGA-69-7979-01 X 153173257 153173257 G - ARHGAP4 Frame_Shift_Del p.R963Gfs*17 0.17 TCGA-69-7979-01 X 153416360 153416360 C G OPN1LW Silent p.V115V 0.10 TCGA-69-7979-01 X 153420200 153420200 C G OPN1LW Missense_Mutation p.L244V 0.09 tolerated(0.34) possibly_damaging(0.595) TCGA-69-7979-01 X 153421925 153421925 C A OPN1LW Missense_Mutation p.P301T 0.11 tolerated(0.07) probably_damaging(1) TCGA-69-7979-01 X 153578209 153578209 T A FLNA Missense_Mutation p.T2454S 0.10 tolerated(0.1) possibly_damaging(0.486) TCGA-69-7979-01 X 153593596 153593596 C A FLNA Silent p.L533L 0.14 TCGA-69-7979-01 X 153599621 153599621 C A FLNA 5'UTR 0.20 TCGA-69-7979-01 X 153627911 153627911 G A RPL10 Missense_Mutation p.E56K 0.08 deleterious(0.01) possibly_damaging(0.591) TCGA-69-7979-01 X 153697502 153697502 C T PLXNA3 Missense_Mutation p.T1513I 0.09 deleterious(0) benign(0.056) TCGA-69-7979-01 X 153717296 153717296 C A SLC10A3 5'UTR 0.20 TCGA-69-7979-01 X 154001506 154001506 G T DKC1 Missense_Mutation p.K379N 0.12 deleterious(0) probably_damaging(0.951) TCGA-69-7979-01 X 154157597 154157597 T A F8 Missense_Mutation p.T1490S 0.15 tolerated(0.61) benign(0.021) TCGA-69-7979-01 X 154157734 154157734 T C F8 Missense_Mutation p.D1444G 0.15 tolerated(0.12) benign(0.007) TCGA-69-7979-01 X 154158694 154158694 G T F8 Nonsense_Mutation p.S1124* 0.11 TCGA-69-7979-01 X 208264 208264 C T PLCXD1 Silent p.H164H 0.33 TCGA-69-7979-01 X 27839903 27839903 G T MAGEB10 Silent p.L160L 0.33 TCGA-69-7979-01 X 30254136 30254136 C A MAGEB3 Missense_Mutation p.A32E 0.33 tolerated(0.1) benign(0.119) TCGA-69-7979-01 X 30322843 30322843 G A NR0B1 Silent p.P422P 0.40 TCGA-69-7979-01 X 34149265 34149265 C A FAM47A Silent p.A377A 0.49 TCGA-69-7979-01 X 34962737 34962737 C A FAM47B Missense_Mutation p.L597I 0.24 deleterious(0.04) probably_damaging(0.996) TCGA-69-7979-01 X 38271134 38271134 C A OTC Missense_Mutation p.S296Y 0.29 deleterious(0) possibly_damaging(0.696) TCGA-69-7979-01 X 40994008 40994008 G A USP9X Missense_Mutation p.R118Q 0.39 deleterious(0.01) probably_damaging(0.945) TCGA-69-7979-01 X 48054770 48054770 G T SSX5 Silent p.R9R 0.50 TCGA-69-7979-01 X 48650291 48650291 C A GATA1 Silent p.I87I 0.62 TCGA-69-7979-01 X 48887604 48887604 G T TFE3 3'UTR 0.47 TCGA-69-7979-01 X 48887605 48887605 G T TFE3 3'UTR 0.47 TCGA-69-7979-01 X 49030730 49030730 A T PLP2 Missense_Mutation p.T132S 0.47 tolerated(0.16) benign(0.343) TCGA-69-7979-01 X 49077499 49077499 C A CACNA1F Missense_Mutation p.G788C 0.41 deleterious(0.04) benign(0.002) TCGA-69-7979-01 X 49834576 49834576 G C CLCN5 Missense_Mutation p.R69T 0.31 tolerated(0.57) benign(0.001) TCGA-69-7979-01 X 50111965 50111965 G T DGKK RNA 0.37 TCGA-69-7979-01 X 50213230 50213230 C A DGKK RNA 0.44 TCGA-69-7979-01 X 51149965 51149965 G T CXorf67 Missense_Mutation p.A33S 0.54 tolerated(0.07) benign(0.373) TCGA-69-7979-01 X 53228302 53228302 G T KDM5C Silent p.L700L 0.43 TCGA-69-7979-01 X 591606 591606 G T SHOX 5'UTR 0.28 TCGA-69-7979-01 X 591766 591766 G T SHOX Missense_Mutation p.R45L 0.23 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-69-7979-01 X 62570087 62570087 C A SPIN4 Missense_Mutation p.Q204H 0.21 tolerated(0.6) benign(0.214) TCGA-69-7979-01 X 63410257 63410257 T A AMER1 Silent p.P970P 0.33 TCGA-69-7979-01 X 63410391 63410391 C T AMER1 Missense_Mutation p.E926K 0.21 deleterious(0.01) possibly_damaging(0.459) TCGA-69-7979-01 X 63412015 63412015 C A AMER1 Missense_Mutation p.E384D 0.26 tolerated(0.11) possibly_damaging(0.806) TCGA-69-7979-01 X 63412879 63412879 G T AMER1 Missense_Mutation p.H96Q 0.21 deleterious(0) probably_damaging(0.944) TCGA-69-7979-01 X 64754486 64754486 G A LAS1L Missense_Mutation p.S37L 0.40 tolerated_low_confidence(0.26) benign(0.001) TCGA-69-7979-01 X 66931407 66931407 A T AR Silent p.P683P 0.26 TCGA-69-7979-01 X 68749626 68749626 G T FAM155B Missense_Mutation p.A416S 0.18 tolerated(1) benign(0) TCGA-69-7979-01 X 69595093 69595093 G A KIF4A Silent p.E606E 0.17 TCGA-69-7979-01 X 69669599 69669599 G T DLG3 Missense_Mutation p.R198L 0.27 tolerated(0.14) benign(0.01) TCGA-69-7979-01 X 70360628 70360628 A G MED12 Missense_Mutation p.Q2063R 0.18 unknown(0) TCGA-69-7979-01 X 70463771 70463771 C A ZMYM3 Missense_Mutation p.G1114C 0.58 deleterious(0) probably_damaging(1) TCGA-69-7979-01 X 70524920 70524920 G T ITGB1BP2 Missense_Mutation p.A308S 0.12 tolerated(0.82) benign(0.005) TCGA-69-7979-01 X 70586171 70586171 C A TAF1 Missense_Mutation p.P3T 0.16 deleterious_low_confidence(0.03) benign(0.005) TCGA-69-7979-01 X 71864285 71864285 C T PHKA1 Silent p.V462V 0.17 TCGA-69-7979-01 X 72433312 72433312 C A NAP1L2 Missense_Mutation p.K339N 0.23 deleterious(0) probably_damaging(0.984) TCGA-69-7979-01 X 72674301 72674301 G T CDX4 Silent p.S245S 0.33 TCGA-69-7979-01 X 73524366 73524366 C A ZCCHC13 Missense_Mutation p.Q89K 0.19 tolerated(0.09) possibly_damaging(0.803) TCGA-69-7979-01 X 73812086 73812086 G T RLIM Missense_Mutation p.T355N 0.20 deleterious(0.03) unknown(0) TCGA-69-7979-01 X 73959997 73959997 C G KIAA2022 Missense_Mutation p.K1465N 0.16 deleterious(0) probably_damaging(0.999) TCGA-69-7979-01 X 73962862 73962862 C G KIAA2022 Missense_Mutation p.W510C 0.23 tolerated(0.18) probably_damaging(0.994) TCGA-69-7979-01 X 73963690 73963690 G A KIAA2022 Silent p.S234S 0.23 TCGA-69-7979-01 X 78216351 78216351 C A P2RY10 Missense_Mutation p.L112M 0.22 deleterious(0) probably_damaging(0.995) TCGA-69-7979-01 X 7870120 7870120 G A PNPLA4 Silent p.T180T 0.47 TCGA-69-7979-01 X 79281106 79281106 G T TBX22 Missense_Mutation p.V155F 0.14 deleterious(0) probably_damaging(0.987) TCGA-69-7979-01 X 85119744 85119744 C A CHM Missense_Mutation p.G618V 0.53 deleterious(0.01) possibly_damaging(0.644) TCGA-69-7979-01 X 88008836 88008836 C A CPXCR1 Missense_Mutation p.P141T 0.33 deleterious(0.01) probably_damaging(0.958) TCGA-69-7979-01 X 91873757 91873757 G T PCDH11X Missense_Mutation p.G1288W 0.26 deleterious_low_confidence(0.02) probably_damaging(0.919) TCGA-69-7979-01 X 91873778 91873778 G T PCDH11X Nonsense_Mutation p.G1295* 0.24 TCGA-69-7979-01 X 92927450 92927450 G T NAP1L3 Missense_Mutation p.P285H 0.41 tolerated_low_confidence(0.07) benign(0.023) TCGA-69-7979-01 X 96139982 96139982 G T RPA4 Missense_Mutation p.A225S 0.12 tolerated(0.47) benign(0.096) TCGA-69-7979-01 X 99925897 99925897 C A SRPX2 Silent p.P437P 0.21 TCGA-69-7980-01 10 101157226 101157226 T G GOT1 3'UTR 0.06 TCGA-69-7980-01 10 102222936 102222936 C T WNT8B Missense_Mutation p.S4L 0.15 tolerated_low_confidence(0.35) benign(0) TCGA-69-7980-01 10 102587431 102587431 C G PAX2 3'UTR 0.23 TCGA-69-7980-01 10 105182844 105182844 G T PDCD11 Missense_Mutation p.G866V 0.34 deleterious(0.01) benign(0.347) TCGA-69-7980-01 10 105779539 105779539 G C SLK Missense_Mutation p.L1060F 0.13 deleterious(0) probably_damaging(0.996) TCGA-69-7980-01 10 117607386 117607386 A T ATRNL1 Splice_Site p.X1302_splice 0.19 TCGA-69-7980-01 10 118236601 118236601 G A PNLIPRP3 Splice_Site p.X447_splice 0.22 TCGA-69-7980-01 10 127724787 127724787 G T ADAM12 Silent p.L822L 0.43 TCGA-69-7980-01 10 127730660 127730660 C T ADAM12 Intron 0.28 TCGA-69-7980-01 10 127731628 127731628 G A ADAM12 Silent p.S698S 0.06 TCGA-69-7980-01 10 131639150 131639150 G A EBF3 Missense_Mutation p.P498S 0.11 deleterious_low_confidence(0.01) benign(0.013) TCGA-69-7980-01 10 131973129 131973129 A T GLRX3 Splice_Site p.X275_splice 0.60 TCGA-69-7980-01 10 16563060 16563060 A G C1QL3 Missense_Mutation p.V2A 0.53 tolerated_low_confidence(0.15) unknown(0) TCGA-69-7980-01 10 18803262 18803262 C A CACNB2 Silent p.P256P 0.26 TCGA-69-7980-01 10 18803263 18803263 C T CACNB2 Missense_Mutation p.H257Y 0.26 deleterious(0.05) benign(0.017) TCGA-69-7980-01 10 26465695 26465695 G T MYO3A Missense_Mutation p.Q1453H 0.49 tolerated_low_confidence(0.98) benign(0.002) TCGA-69-7980-01 10 30658088 30658088 C A AL161651.1 5'Flank 0.55 TCGA-69-7980-01 10 4877928 4877928 G T AKR1E2 Missense_Mutation p.R129L 0.49 deleterious(0.02) benign(0.196) TCGA-69-7980-01 10 52005175 52005175 G T ASAH2 Missense_Mutation p.P56Q 0.26 tolerated_low_confidence(0.33) benign(0.004) TCGA-69-7980-01 10 5969492 5969492 G A FBXO18 Silent p.L990L 0.23 TCGA-69-7980-01 10 59956230 59956230 T A IPMK Silent p.T286T 0.34 TCGA-69-7980-01 10 70405772 70405772 G C TET1 Missense_Mutation p.E1096Q 0.10 tolerated(0.05) possibly_damaging(0.519) TCGA-69-7980-01 10 75204447 75204447 C G PPP3CB Intron 0.20 TCGA-69-7980-01 10 76780503 76780503 G C KAT6B Silent p.T931T 0.18 TCGA-69-7980-01 10 76861663 76861663 C A DUSP13 Intron 0.45 TCGA-69-7980-01 10 78674762 78674762 G T KCNMA1 Missense_Mutation p.P966Q 0.64 deleterious(0.04) possibly_damaging(0.876) TCGA-69-7980-01 10 860887 860887 C A LARP4B Missense_Mutation p.D607Y 0.29 deleterious(0.01) benign(0.37) TCGA-69-7980-01 10 86259650 86259650 C G CCSER2 Missense_Mutation p.S782C 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-69-7980-01 10 93619378 93619378 A G TNKS2 Missense_Mutation p.K1085R 0.58 tolerated(0.08) benign(0.001) TCGA-69-7980-01 10 98064330 98064330 T A DNTT Missense_Mutation p.S26T 0.29 tolerated(0.71) benign(0) TCGA-69-7980-01 10 99338071 99338071 C A ANKRD2 Silent p.L115L 0.38 TCGA-69-7980-01 11 102487653 102487653 G T MMP20 Missense_Mutation p.D88E 0.45 deleterious(0) probably_damaging(0.955) TCGA-69-7980-01 11 105781191 105781191 G T GRIA4 Missense_Mutation p.V397F 0.12 deleterious(0.04) possibly_damaging(0.799) TCGA-69-7980-01 11 108562632 108562632 G A DDX10 Silent p.R335R 0.56 TCGA-69-7980-01 11 111943723 111943723 A T PIH1D2 Missense_Mutation p.L59Q 0.54 deleterious(0) possibly_damaging(0.507) TCGA-69-7980-01 11 111957457 111957457 C G TIMM8B Silent p.L12L 0.17 TCGA-69-7980-01 11 113281511 113281511 T C DRD2 Missense_Mutation p.I424V 0.24 tolerated(1) benign(0.05) TCGA-69-7980-01 11 113283453 113283453 G T DRD2 Missense_Mutation p.S321R 0.33 tolerated(0.25) benign(0.035) TCGA-69-7980-01 11 113283469 113283469 T G DRD2 Missense_Mutation p.H316P 0.33 tolerated(0.3) benign(0) TCGA-69-7980-01 11 11373856 11373856 C T CSNK2A3 Missense_Mutation p.D271N 0.09 tolerated(0.12) benign(0.047) TCGA-69-7980-01 11 118971834 118971834 C T DPAGT1 Missense_Mutation p.G59E 0.14 deleterious(0) probably_damaging(1) TCGA-69-7980-01 11 122738263 122738263 G C CRTAM Missense_Mutation p.E322Q 0.12 deleterious(0) probably_damaging(0.976) TCGA-69-7980-01 11 123065631 123065631 G T CLMP Silent p.L6L 0.13 TCGA-69-7980-01 11 123813849 123813849 C A OR6T1 Nonsense_Mutation p.E233* 0.66 TCGA-69-7980-01 11 124135472 124135472 C G OR8G5 Silent p.L250L 0.13 TCGA-69-7980-01 11 124743218 124743218 G T ROBO3 Missense_Mutation p.G517C 0.29 deleterious(0) probably_damaging(1) TCGA-69-7980-01 11 129762741 129762741 C T NFRKB Missense_Mutation p.D15N 0.11 deleterious_low_confidence(0) unknown(0) TCGA-69-7980-01 11 18231236 18231236 C T RP11-113D6.10 Nonsense_Mutation p.Q8* 0.44 TCGA-69-7980-01 11 18427047 18427047 C G LDHA Silent p.L283L 0.04 TCGA-69-7980-01 11 18637123 18637123 G C SPTY2D1 Missense_Mutation p.S233C 0.17 deleterious(0.02) possibly_damaging(0.7) TCGA-69-7980-01 11 30032313 30032313 G C KCNA4 Missense_Mutation p.T638R 0.30 tolerated_low_confidence(0.24) benign(0.289) TCGA-69-7980-01 11 31824340 31824340 C A PAX6 Missense_Mutation p.G18V 0.43 deleterious(0) probably_damaging(1) TCGA-69-7980-01 11 36511633 36511633 C A TRAF6 Missense_Mutation p.V442L 0.47 tolerated(0.79) benign(0) TCGA-69-7980-01 11 36597395 36597395 A G RAG1 Silent p.K847K 0.16 TCGA-69-7980-01 11 3794932 3794932 A C NUP98 Missense_Mutation p.V178G 0.65 deleterious(0) benign(0.423) TCGA-69-7980-01 11 44956516 44956517 CA T TP53I11 Frame_Shift_Del p.L163Hfs*85 0.15 TCGA-69-7980-01 11 45274040 45274040 G C SYT13 Missense_Mutation p.L260V 0.21 tolerated(0.21) benign(0.096) TCGA-69-7980-01 11 4904000 4904000 C A OR51T1 Missense_Mutation p.P318T 0.38 deleterious(0) probably_damaging(0.999) TCGA-69-7980-01 11 5372961 5372961 C T OR51B6 Missense_Mutation p.T75I 0.30 deleterious(0) possibly_damaging(0.696) TCGA-69-7980-01 11 5537381 5537381 G C UBQLNL Nonsense_Mutation p.Y97* 0.72 TCGA-69-7980-01 11 55595525 55595525 C G OR5L2 Missense_Mutation p.F277L 0.12 deleterious(0.02) possibly_damaging(0.876) TCGA-69-7980-01 11 55735431 55735431 C A OR10AG1 Missense_Mutation p.C170F 0.19 deleterious(0) probably_damaging(1) TCGA-69-7980-01 11 55761839 55761839 T C OR5F1 Missense_Mutation p.E88G 0.21 tolerated(0.12) benign(0.071) TCGA-69-7980-01 11 55860955 55860955 C A OR8I2 Missense_Mutation p.P58T 0.36 deleterious(0) probably_damaging(0.998) TCGA-69-7980-01 11 55861147 55861147 C A OR8I2 Missense_Mutation p.R122S 0.67 deleterious(0) possibly_damaging(0.483) TCGA-69-7980-01 11 56000397 56000397 T A OR5T2 Missense_Mutation p.I89F 0.21 tolerated(0.53) benign(0.03) TCGA-69-7980-01 11 5906244 5906244 C A OR52E4 Missense_Mutation p.T241N 0.39 deleterious(0) probably_damaging(1) TCGA-69-7980-01 11 60777208 60777208 A T CD6 Nonsense_Mutation p.K316* 0.19 TCGA-69-7980-01 11 60777209 60777209 A G CD6 Missense_Mutation p.K316R 0.18 tolerated(0.5) benign(0.029) TCGA-69-7980-01 11 61917542 61917542 C G INCENP Missense_Mutation p.T802S 0.14 tolerated(0.12) benign(0.319) TCGA-69-7980-01 11 62472928 62472928 G A BSCL2 Silent p.V83V 0.23 TCGA-69-7980-01 11 62591720 62591724 TGTTC - STX5 Frame_Shift_Del p.Q274Hfs*2 0.11 TCGA-69-7980-01 11 62598658 62598658 G C STX5 Missense_Mutation p.L20V 0.18 tolerated_low_confidence(0.55) benign(0.021) TCGA-69-7980-01 11 6260485 6260485 C A CNGA4 Missense_Mutation p.P17T 0.27 tolerated(0.45) benign(0.01) TCGA-69-7980-01 11 64136986 64136986 G A RPS6KA4 Silent p.R499R 0.14 TCGA-69-7980-01 11 66331419 66331420 CG - CTSF Frame_Shift_Del p.S480Cfs*16 0.18 TCGA-69-7980-01 11 6640682 6640682 A G TPP1 5'UTR 0.29 TCGA-69-7980-01 11 724778 724778 C T EPS8L2 Silent p.F503F 0.15 TCGA-69-7980-01 11 7334683 7334683 G A SYT9 Silent p.Q185Q 0.12 TCGA-69-7980-01 11 74915622 74915622 G A SLCO2B1 Silent p.V709V 0.22 TCGA-69-7980-01 11 92543184 92543184 T C FAT3 Silent p.Y3141Y 0.36 TCGA-69-7980-01 11 92714731 92714731 G T MTNR1B Missense_Mutation p.K114N 0.15 deleterious(0) possibly_damaging(0.507) TCGA-69-7980-01 11 92714732 92714732 G T MTNR1B Missense_Mutation p.A115S 0.14 tolerated(0.05) possibly_damaging(0.794) TCGA-69-7980-01 12 100166819 100166819 G C ANKS1B Missense_Mutation p.L337V 0.57 tolerated(1) benign(0.22) TCGA-69-7980-01 12 100811895 100811895 G T SLC17A8 Missense_Mutation p.M462I 0.45 tolerated(0.13) probably_damaging(0.992) TCGA-69-7980-01 12 104025458 104025458 C T STAB2 Silent p.P190P 0.13 TCGA-69-7980-01 12 104049082 104049082 A G STAB2 Silent p.L535L 0.51 TCGA-69-7980-01 12 104152923 104152923 C A STAB2 Silent p.R2374R 0.64 TCGA-69-7980-01 12 108685544 108685544 C - CMKLR1 3'UTR 0.35 TCGA-69-7980-01 12 109994891 109994891 C A MMAB Missense_Mutation p.G232V 0.61 deleterious(0) possibly_damaging(0.871) TCGA-69-7980-01 12 111749936 111749936 A G CUX2 Missense_Mutation p.T645A 0.21 tolerated(0.11) possibly_damaging(0.688) TCGA-69-7980-01 12 111956120 111956120 T G ATXN2 Silent p.S526S 0.19 TCGA-69-7980-01 12 112130648 112130648 G C ACAD10 Silent p.V45V 0.17 TCGA-69-7980-01 12 112717042 112717042 T C HECTD4 Silent p.S415S 0.71 TCGA-69-7980-01 12 14649278 14649278 G A ATF7IP Splice_Site p.X1131_splice 0.67 TCGA-69-7980-01 12 1481101 1481101 G A ERC1 Silent p.L961L 0.23 TCGA-69-7980-01 12 14927396 14927396 G C H2AFJ 5'UTR 0.10 TCGA-69-7980-01 12 21028237 21028237 G T SLCO1B3 Nonsense_Mutation p.G266* 0.81 TCGA-69-7980-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.80 deleterious(0.02) possibly_damaging(0.773) TCGA-69-7980-01 12 26868721 26868721 C G ITPR2 Missense_Mutation p.M224I 0.04 deleterious(0.01) possibly_damaging(0.792) TCGA-69-7980-01 12 41966616 41966616 G C PDZRN4 Missense_Mutation p.E679Q 0.17 deleterious(0) probably_damaging(0.997) TCGA-69-7980-01 12 45803234 45803234 G T ANO6 Missense_Mutation p.G680C 0.73 deleterious(0) probably_damaging(0.972) TCGA-69-7980-01 12 48141561 48141561 G A RAPGEF3 Silent p.V469V 0.14 TCGA-69-7980-01 12 4920437 4920437 G A KCNA6 Silent p.P410P 0.38 TCGA-69-7980-01 12 49439942 49439942 G T KMT2D Silent p.G1533G 0.21 TCGA-69-7980-01 12 52281848 52281848 C A ANKRD33 5'UTR 0.38 TCGA-69-7980-01 12 53849708 53849708 G C PCBP2 Missense_Mutation p.E56Q 0.07 deleterious(0.01) probably_damaging(0.994) TCGA-69-7980-01 12 55846495 55846495 C G OR6C2 Missense_Mutation p.F166L 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.908) TCGA-69-7980-01 12 56222305 56222305 A C DNAJC14 Silent p.A46A 0.47 TCGA-69-7980-01 12 56712162 56712162 G A PAN2 Nonsense_Mutation p.Q1145* 0.12 TCGA-69-7980-01 12 57605102 57605102 G A LRP1 Missense_Mutation p.V4354I 0.33 benign(0.001) TCGA-69-7980-01 12 64437254 64437254 C A SRGAP1 Missense_Mutation p.L234I 0.68 deleterious(0) possibly_damaging(0.798) TCGA-69-7980-01 12 72009061 72009061 G A ZFC3H1 Missense_Mutation p.P1727L 0.10 tolerated(0.3) benign(0.057) TCGA-69-7980-01 12 72667195 72667195 C A TRHDE Missense_Mutation p.Q213K 0.09 tolerated(0.96) benign(0.008) TCGA-69-7980-01 12 76786453 76786453 C T OSBPL8 Silent p.K279K 0.12 TCGA-69-7980-01 12 88584229 88584229 G C TMTC3 Splice_Site p.X513_splice 0.15 TCGA-69-7980-01 12 9224999 9224999 A C A2M Missense_Mutation p.D1353E 0.09 tolerated(0.12) benign(0.001) TCGA-69-7980-01 12 96354210 96354210 A G AMDHD1 Missense_Mutation p.I208V 0.14 tolerated(0.64) benign(0.005) TCGA-69-7980-01 12 97158910 97158910 T G C12orf55 Missense_Mutation p.M2732R 0.50 tolerated(0.39) benign(0) TCGA-69-7980-01 12 977998 977998 G T WNK1 Intron 0.75 TCGA-69-7980-01 13 102250501 102250501 A T ITGBL1 Splice_Site p.X290_splice 0.34 TCGA-69-7980-01 13 26402301 26402301 G C ATP8A2 Missense_Mutation p.E909Q 0.28 deleterious(0) probably_damaging(0.983) TCGA-69-7980-01 13 31480812 31480812 C A MEDAG Missense_Mutation p.Q54K 0.33 tolerated(0.38) benign(0.142) TCGA-69-7980-01 13 36046592 36046592 G T NBEA Missense_Mutation p.K2168N 0.44 tolerated(0.08) benign(0.037) TCGA-69-7980-01 13 38320089 38320089 C A TRPC4 Missense_Mutation p.K294N 0.21 tolerated(0.1) probably_damaging(0.994) TCGA-69-7980-01 13 50204835 50204835 C A ARL11 Silent p.L84L 0.34 TCGA-69-7980-01 13 53029722 53029722 C A CKAP2 Missense_Mutation p.Q11K 0.16 deleterious(0.03) probably_damaging(0.953) TCGA-69-7980-01 13 86369289 86369289 G T SLITRK6 Missense_Mutation p.P452Q 0.11 deleterious(0.01) probably_damaging(0.988) TCGA-69-7980-01 13 88328530 88328530 C T SLITRK5 Missense_Mutation p.P296L 0.44 deleterious(0.02) benign(0.129) TCGA-69-7980-01 14 100801274 100801274 C T WARS Missense_Mutation p.V452I 0.10 tolerated(0.16) benign(0.014) TCGA-69-7980-01 14 101200499 101200499 C A DLK1 Missense_Mutation p.H140N 0.19 tolerated(1) benign(0.042) TCGA-69-7980-01 14 101201212 101201212 G A DLK1 Silent p.E377E 0.11 TCGA-69-7980-01 14 101490172 101490172 G T MIR299 RNA 0.48 TCGA-69-7980-01 14 101530842 101530842 A G MIR541 RNA 0.14 TCGA-69-7980-01 14 105054091 105054091 C G C14orf180 Missense_Mutation p.D39E 0.14 tolerated(0.07) benign(0) TCGA-69-7980-01 14 106320736 106320736 G - IGHM Frame_Shift_Del p.A359Rfs*20 0.16 TCGA-69-7980-01 14 20528637 20528637 C T OR4L1 Missense_Mutation p.A145V 0.38 tolerated(1) benign(0.001) TCGA-69-7980-01 14 20979113 20979113 C G RNASE10 Silent p.L161L 0.23 TCGA-69-7980-01 14 21991583 21991583 T C SALL2 Missense_Mutation p.E760G 0.49 deleterious(0.02) benign(0.21) TCGA-69-7980-01 14 24588398 24588398 C G DCAF11 Nonsense_Mutation p.S275* 0.17 TCGA-69-7980-01 14 24845275 24845275 G - NFATC4 Frame_Shift_Del p.R738Pfs*12 0.26 TCGA-69-7980-01 14 33015208 33015208 C T AKAP6 Missense_Mutation p.S450F 0.15 deleterious(0.01) possibly_damaging(0.748) TCGA-69-7980-01 14 39512034 39512034 G C SEC23A Missense_Mutation p.L648V 0.04 deleterious(0.01) probably_damaging(0.959) TCGA-69-7980-01 14 42360560 42360560 C A LRFN5 Missense_Mutation p.T498N 0.21 deleterious(0) probably_damaging(0.99) TCGA-69-7980-01 14 42360851 42360851 G C LRFN5 Missense_Mutation p.G595A 0.39 tolerated(0.19) benign(0.114) TCGA-69-7980-01 14 44975043 44975043 T C FSCB Missense_Mutation p.E383G 0.35 deleterious(0.04) benign(0.096) TCGA-69-7980-01 14 52508850 52508850 C A NID2 Missense_Mutation p.G600C 0.23 deleterious(0) probably_damaging(0.999) TCGA-69-7980-01 14 53385933 53385933 C A FERMT2 Missense_Mutation p.R100L 0.28 tolerated(0.13) probably_damaging(0.956) TCGA-69-7980-01 14 68029586 68029586 C A PLEKHH1 Missense_Mutation p.P413H 0.24 deleterious(0) probably_damaging(0.993) TCGA-69-7980-01 14 69445737 69445737 T C ACTN1 Missense_Mutation p.M13V 0.38 deleterious_low_confidence(0.03) benign(0.082) TCGA-69-7980-01 14 70634159 70634159 G C SLC8A3 Missense_Mutation p.H327Q 0.36 deleterious(0) possibly_damaging(0.84) TCGA-69-7980-01 14 70989767 70989767 C A ADAM20 Nonsense_Mutation p.G620* 0.29 TCGA-69-7980-01 14 76107373 76107373 C A FLVCR2 Silent p.I437I 0.25 TCGA-69-7980-01 14 86088794 86088795 - T FLRT2 Frame_Shift_Ins p.C314Lfs*2 0.25 TCGA-69-7980-01 14 92471799 92471799 T A TRIP11 Missense_Mutation p.N841Y 0.34 deleterious(0.02) possibly_damaging(0.739) TCGA-69-7980-01 14 99640725 99640725 C A BCL11B Silent p.R816R 0.52 TCGA-69-7980-01 15 102346129 102346129 C G OR4F6 Missense_Mutation p.I69M 0.03 deleterious_low_confidence(0.03) benign(0.126) TCGA-69-7980-01 15 22963800 22963800 G T CYFIP1 Missense_Mutation p.V772F 0.58 deleterious(0) benign(0.417) TCGA-69-7980-01 15 26806080 26806080 C A GABRB3 Missense_Mutation p.R360L 0.38 deleterious(0.04) possibly_damaging(0.647) TCGA-69-7980-01 15 31319284 31319284 C A TRPM1 Missense_Mutation p.Q1127H 0.38 deleterious(0.01) probably_damaging(0.98) TCGA-69-7980-01 15 31354895 31354895 C A TRPM1 Nonsense_Mutation p.E343* 0.56 TCGA-69-7980-01 15 35085482 35085482 C A ACTC1 Missense_Mutation p.A140S 0.15 deleterious_low_confidence(0.04) possibly_damaging(0.801) TCGA-69-7980-01 15 40582792 40582792 C A PLCB2 Missense_Mutation p.K1065N 0.57 deleterious(0) probably_damaging(0.999) TCGA-69-7980-01 15 44175919 44175919 G C FRMD5 Missense_Mutation p.H373D 0.28 tolerated(0.22) benign(0.003) TCGA-69-7980-01 15 48056403 48056403 T A SEMA6D Missense_Mutation p.M333K 0.19 deleterious(0) possibly_damaging(0.718) TCGA-69-7980-01 15 50168682 50168682 G T ATP8B4 Silent p.L940L 0.27 TCGA-69-7980-01 15 51285706 51285706 G T AP4E1 Missense_Mutation p.A744S 0.10 tolerated(0.59) benign(0.002) TCGA-69-7980-01 15 51289560 51289560 G T AP4E1 Missense_Mutation p.R795M 0.32 deleterious(0) possibly_damaging(0.882) TCGA-69-7980-01 15 51750903 51750903 T C DMXL2 Intron 0.17 TCGA-69-7980-01 15 55516109 55516109 T C RAB27A Missense_Mutation p.I149V 0.26 deleterious(0.01) benign(0.001) TCGA-69-7980-01 15 55839204 55839204 G A PYGO1 Missense_Mutation p.P93S 0.17 tolerated(0.35) probably_damaging(0.996) TCGA-69-7980-01 15 56140574 56140574 C A NEDD4 Missense_Mutation p.G860V 0.28 deleterious(0) probably_damaging(0.994) TCGA-69-7980-01 15 58840561 58840561 C T LIPC Nonsense_Mutation p.R281* 0.09 TCGA-69-7980-01 15 60795032 60795032 A C RORA Silent p.R403R 0.24 TCGA-69-7980-01 15 65450964 65450964 C A CLPX Missense_Mutation p.D281Y 0.12 deleterious(0) possibly_damaging(0.615) TCGA-69-7980-01 15 65684477 65684477 T A IGDCC4 Missense_Mutation p.Q706L 0.12 tolerated(0.16) benign(0.297) TCGA-69-7980-01 15 69072434 69072434 C G ANP32A Missense_Mutation p.E246Q 0.10 tolerated_low_confidence(0.09) unknown(0) TCGA-69-7980-01 15 74702885 74702885 C A SEMA7A 3'UTR 0.09 TCGA-69-7980-01 15 76075454 76075454 C A RN7SL319P 5'Flank 0.10 TCGA-69-7980-01 15 78888978 78888978 G C CHRNA3 Missense_Mutation p.L496V 0.31 deleterious(0.04) probably_damaging(0.996) TCGA-69-7980-01 15 81635632 81635632 G T TMC3 Missense_Mutation p.Q568K 0.21 deleterious(0) probably_damaging(0.992) TCGA-69-7980-01 15 81635633 81635633 G T TMC3 Missense_Mutation p.N567K 0.20 deleterious(0) probably_damaging(0.989) TCGA-69-7980-01 15 83226530 83226530 C A CPEB1 Missense_Mutation p.D196Y 0.19 deleterious(0) probably_damaging(1) TCGA-69-7980-01 15 85399757 85399757 G A ALPK3 Silent p.G798G 0.15 TCGA-69-7980-01 15 87572091 87572091 G A AGBL1 3'UTR 0.08 TCGA-69-7980-01 15 89383370 89383370 C G ACAN Missense_Mutation p.D194E 0.12 deleterious(0) unknown(0) TCGA-69-7980-01 15 89398664 89398664 G A ACAN Missense_Mutation p.G950R 0.43 deleterious(0.03) probably_damaging(0.973) TCGA-69-7980-01 15 90255262 90255262 T C WDR93 Silent p.D189D 0.14 TCGA-69-7980-01 15 91801761 91801761 G C SV2B Missense_Mutation p.E299Q 0.06 deleterious(0.02) probably_damaging(0.933) TCGA-69-7980-01 16 1035263 1035263 C A SOX8 Silent p.P406P 0.46 TCGA-69-7980-01 16 15095657 15095657 C G PDXDC1 Silent p.L62L 0.09 TCGA-69-7980-01 16 15829353 15829353 C A MYH11 Missense_Mutation p.D1133Y 0.09 possibly_damaging(0.828) TCGA-69-7980-01 16 20322604 20322604 C A GP2 Splice_Site p.X519_splice 0.64 TCGA-69-7980-01 16 21080738 21080738 C T DNAH3 Missense_Mutation p.A1127T 0.40 tolerated(0.29) benign(0.044) TCGA-69-7980-01 16 22926860 22926860 G T HS3ST2 Missense_Mutation p.G361W 0.59 deleterious(0) probably_damaging(1) TCGA-69-7980-01 16 2369608 2369608 C G ABCA3 Missense_Mutation p.V283L 0.09 tolerated(0.06) possibly_damaging(0.78) TCGA-69-7980-01 16 23713983 23713983 C T ERN2 Missense_Mutation p.V347I 0.28 deleterious(0.01) possibly_damaging(0.679) TCGA-69-7980-01 16 25175934 25175934 G C LCMT1 Silent p.L195L 0.23 TCGA-69-7980-01 16 2647754 2647754 G C PDPK1 Missense_Mutation p.A553P 0.18 tolerated_low_confidence(0.09) benign(0.005) TCGA-69-7980-01 16 27454428 27454428 C A IL21R Silent p.P166P 0.28 TCGA-69-7980-01 16 28515207 28515207 G T IL27 Missense_Mutation p.H66N 0.28 deleterious(0) benign(0.42) TCGA-69-7980-01 16 31090321 31090321 G C ZNF646 Silent p.G892G 0.26 TCGA-69-7980-01 16 31276762 31276762 G T ITGAM Missense_Mutation p.G61C 0.11 deleterious(0) probably_damaging(1) TCGA-69-7980-01 16 31434720 31434720 G T ITGAD Missense_Mutation p.W969C 0.38 deleterious(0.02) probably_damaging(0.995) TCGA-69-7980-01 16 321090 321090 G T RGS11 Missense_Mutation p.A291D 0.19 deleterious(0) benign(0.265) TCGA-69-7980-01 16 4511851 4511851 C G NMRAL1 Missense_Mutation p.R277T 0.13 tolerated(0.08) benign(0.028) TCGA-69-7980-01 16 4511958 4511958 C T NMRAL1 Missense_Mutation p.M241I 0.13 tolerated(1) benign(0) TCGA-69-7980-01 16 48134857 48134857 G A ABCC12 Silent p.F988F 0.13 TCGA-69-7980-01 16 4882010 4882010 C T GLYR1 Silent p.R169R 0.14 TCGA-69-7980-01 16 49313338 49313338 C G CBLN1 Missense_Mutation p.G187R 0.09 deleterious(0) probably_damaging(0.985) TCGA-69-7980-01 16 5078018 5078018 G A NAGPA Silent p.G363G 0.09 TCGA-69-7980-01 16 50813605 50813605 G T CYLD Nonsense_Mutation p.E390* 0.11 TCGA-69-7980-01 16 50813606 50813606 A T CYLD Missense_Mutation p.E390V 0.11 tolerated(0.11) benign(0.042) TCGA-69-7980-01 16 55519646 55519646 C A MMP2 Nonsense_Mutation p.Y263* 0.10 TCGA-69-7980-01 16 56226490 56226490 T A GNAO1 Silent p.A41A 0.13 TCGA-69-7980-01 16 56396115 56396115 C A AMFR 3'UTR 0.25 TCGA-69-7980-01 16 56906650 56906650 C T SLC12A3 Silent p.P349P 0.15 TCGA-69-7980-01 16 57597831 57597831 G T GPR114 Missense_Mutation p.K123N 0.08 tolerated(0.2) benign(0.074) TCGA-69-7980-01 16 58559111 58559111 C G CNOT1 Missense_Mutation p.Q2252H 0.11 deleterious(0) possibly_damaging(0.684) TCGA-69-7980-01 16 58564242 58564242 T C CNOT1 Missense_Mutation p.M2063V 0.14 deleterious(0.01) benign(0.065) TCGA-69-7980-01 16 67401279 67401279 G A LRRC36 Missense_Mutation p.A372T 0.15 tolerated_low_confidence(1) benign(0.002) TCGA-69-7980-01 16 67576587 67576587 C A FAM65A Missense_Mutation p.T653N 0.36 tolerated(0.33) benign(0.006) TCGA-69-7980-01 16 71423712 71423712 G T CALB2 Missense_Mutation p.G254W 0.12 deleterious(0) probably_damaging(0.999) TCGA-69-7980-01 16 81185474 81185474 T C PKD1L2 RNA 0.07 TCGA-69-7980-01 16 81194295 81194295 C T PKD1L2 RNA 0.20 TCGA-69-7980-01 16 814656 814656 C G MSLN Missense_Mutation p.L104V 0.09 deleterious(0) probably_damaging(0.979) TCGA-69-7980-01 16 84270421 84270421 G C KCNG4 Missense_Mutation p.A224G 0.19 deleterious(0) probably_damaging(0.994) TCGA-69-7980-01 16 85838698 85838698 G T COX4I1 Nonsense_Mutation p.E77* 0.11 TCGA-69-7980-01 16 85936643 85936643 C A IRF8 Silent p.R8R 0.26 TCGA-69-7980-01 16 89352509 89352509 G A ANKRD11 Missense_Mutation p.P277L 0.28 probably_damaging(0.995) TCGA-69-7980-01 16 8993541 8993541 C T USP7 Missense_Mutation p.D795N 0.12 deleterious(0.01) benign(0.06) TCGA-69-7980-01 16 89977702 89977702 G T TCF25 3'UTR 0.33 TCGA-69-7980-01 16 90162225 90162225 C A TUBB8P7 RNA 0.29 TCGA-69-7980-01 16 9928037 9928037 C A GRIN2A Missense_Mutation p.V568F 0.13 deleterious(0) probably_damaging(0.943) TCGA-69-7980-01 17 10298475 10298475 T C MYH8 Missense_Mutation p.Y1646C 0.05 deleterious(0.01) possibly_damaging(0.586) TCGA-69-7980-01 17 16220021 16220021 C T PIGL Missense_Mutation p.P174L 0.33 deleterious(0.02) possibly_damaging(0.495) TCGA-69-7980-01 17 18286156 18286156 G C EVPLL Silent p.P163P 0.18 TCGA-69-7980-01 17 18286157 18286157 G T EVPLL Nonsense_Mutation p.E164* 0.18 TCGA-69-7980-01 17 18882139 18882139 C A FAM83G Silent p.T280T 0.15 TCGA-69-7980-01 17 21201792 21201792 G C MAP2K3 Splice_Site p.X39_splice 0.04 TCGA-69-7980-01 17 21730858 21730858 C T UBBP4 Missense_Mutation p.R54C 0.09 tolerated(0.11) benign(0.125) TCGA-69-7980-01 17 2239706 2239706 G A TSR1 Missense_Mutation p.P6S 0.07 tolerated(0.21) benign(0.005) TCGA-69-7980-01 17 26125764 26125764 G A NOS2 Silent p.I24I 0.11 TCGA-69-7980-01 17 27061141 27061141 T C NEK8 Missense_Mutation p.V63A 0.47 deleterious(0) possibly_damaging(0.497) TCGA-69-7980-01 17 29632234 29632234 G T EVI2B Missense_Mutation p.R132S 0.16 tolerated(0.34) benign(0) TCGA-69-7980-01 17 30648077 30648077 C A RHBDL3 Silent p.A348A 0.48 TCGA-69-7980-01 17 32614165 32614165 C G CCL11 Missense_Mutation p.L43V 0.18 tolerated(0.61) benign(0.034) TCGA-69-7980-01 17 33259506 33259506 A T CCT6B Silent p.P409P 0.17 TCGA-69-7980-01 17 33266313 33266313 T A CCT6B Missense_Mutation p.N368Y 0.15 deleterious(0) benign(0.435) TCGA-69-7980-01 17 33504092 33504092 C A UNC45B Missense_Mutation p.H696Q 0.48 tolerated(1) benign(0.021) TCGA-69-7980-01 17 33586549 33586549 C - SLFN5 Frame_Shift_Del p.E282Kfs*34 0.13 TCGA-69-7980-01 17 34264792 34264792 A G LYZL6 Missense_Mutation p.S90P 0.04 deleterious(0.02) probably_damaging(0.979) TCGA-69-7980-01 17 34935751 34935751 G A GGNBP2 Missense_Mutation p.E308K 0.15 deleterious(0) probably_damaging(0.942) TCGA-69-7980-01 17 35981260 35981260 C - DDX52 Frame_Shift_Del p.L471Ffs*2 0.29 TCGA-69-7980-01 17 36288223 36288223 C G TBC1D3F Silent p.P103P 0.09 TCGA-69-7980-01 17 3680872 3680873 - C ITGAE Frame_Shift_Ins p.S39Rfs*38 0.29 TCGA-69-7980-01 17 37186487 37186487 G A CTD-2206N4.2 5'Flank 0.10 TCGA-69-7980-01 17 37340312 37340312 A T CACNB1 Silent p.I290I 0.23 TCGA-69-7980-01 17 38140601 38140601 G A PSMD3 Missense_Mutation p.R92K 0.13 deleterious(0) possibly_damaging(0.852) TCGA-69-7980-01 17 38785088 38785088 T G SMARCE1 Silent p.T395T 0.38 TCGA-69-7980-01 17 38907322 38907322 G T KRT25 Missense_Mutation p.L281M 0.17 deleterious(0) probably_damaging(0.999) TCGA-69-7980-01 17 39642635 39642635 G T KRT36 Missense_Mutation p.P466Q 0.11 deleterious_low_confidence(0) possibly_damaging(0.604) TCGA-69-7980-01 17 39645719 39645719 A G KRT36 Missense_Mutation p.I133T 0.50 tolerated(0.57) benign(0.005) TCGA-69-7980-01 17 40914903 40914903 C A RAMP2 3'UTR 0.11 TCGA-69-7980-01 17 43322352 43322352 G C FMNL1 Missense_Mutation p.E869Q 0.16 deleterious(0) probably_damaging(0.997) TCGA-69-7980-01 17 45822276 45822276 T C TBX21 Silent p.A384A 0.13 TCGA-69-7980-01 17 46700309 46700309 G T HOXB9 Silent p.R236R 0.11 TCGA-69-7980-01 17 4711650 4711651 - AGG PLD2 In_Frame_Ins p.E109dup 0.23 TCGA-69-7980-01 17 50235144 50235144 C T CA10 Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0) benign(0.38) TCGA-69-7980-01 17 51901177 51901177 C A KIF2B Missense_Mutation p.N261K 0.30 deleterious(0) probably_damaging(0.975) TCGA-69-7980-01 17 5462625 5462625 T G NLRP1 Missense_Mutation p.Q464P 0.59 deleterious(0.02) probably_damaging(0.916) TCGA-69-7980-01 17 56679300 56679300 C T TEX14 Silent p.Q521Q 0.10 TCGA-69-7980-01 17 58125668 58125668 C G HEATR6 Missense_Mutation p.A877P 0.12 deleterious(0) probably_damaging(0.979) TCGA-69-7980-01 17 58303470 58303470 C T USP32 Silent p.V454V 0.17 TCGA-69-7980-01 17 67023491 67023491 C T ABCA9 Missense_Mutation p.A631T 0.41 tolerated(0.07) possibly_damaging(0.687) TCGA-69-7980-01 17 67114099 67114099 T A ABCA6 Splice_Site p.X479_splice 0.35 TCGA-69-7980-01 17 68172112 68172113 GC T KCNJ2 Frame_Shift_Del p.C311Ffs*6 0.15 TCGA-69-7980-01 17 6930310 6930310 G A BCL6B Silent p.E409E 0.31 TCGA-69-7980-01 17 7139465 7139465 C T PHF23 Missense_Mutation p.E261K 0.17 tolerated_low_confidence(0.07) benign(0.052) TCGA-69-7980-01 17 725687 725687 C A NXN Missense_Mutation p.C208F 0.91 deleterious(0) probably_damaging(0.996) TCGA-69-7980-01 17 72613365 72613365 G C CD300E Missense_Mutation p.L94V 0.36 deleterious(0) probably_damaging(0.986) TCGA-69-7980-01 17 72694570 72694570 A T CD300LF Nonsense_Mutation p.L166* 0.09 TCGA-69-7980-01 17 72919127 72919127 C A USH1G Silent p.L14L 0.75 TCGA-69-7980-01 17 72926928 72926928 G A OTOP2 Missense_Mutation p.A400T 0.22 deleterious(0.03) benign(0.006) TCGA-69-7980-01 17 73317755 73317755 T C GRB2 Missense_Mutation p.I151M 0.20 tolerated(0.13) benign(0.005) TCGA-69-7980-01 17 7385378 7385378 C A SLC35G6 Silent p.L25L 0.15 TCGA-69-7980-01 17 74271963 74271963 T C QRICH2 Missense_Mutation p.S1641G 0.33 tolerated(0.62) benign(0.001) TCGA-69-7980-01 17 74922712 74922712 G A MGAT5B Silent p.T408T 0.23 TCGA-69-7980-01 17 7578448 7578448 G A TP53 Missense_Mutation p.A161V 0.51 deleterious(0) probably_damaging(1) TCGA-69-7980-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.55 TCGA-69-7980-01 17 78093195 78093195 C T GAA 3'UTR 0.11 TCGA-69-7980-01 17 7831100 7831100 C G KCNAB3 Splice_Site p.X96_splice 0.13 TCGA-69-7980-01 17 79662894 79662894 G A HGS Missense_Mutation p.V420M 0.22 deleterious(0.02) probably_damaging(0.995) TCGA-69-7980-01 18 13621256 13621256 G T LDLRAD4 Missense_Mutation p.D108Y 0.18 deleterious(0.02) possibly_damaging(0.691) TCGA-69-7980-01 18 14513693 14513693 T G POTEC Missense_Mutation p.I501L 0.10 tolerated(0.18) benign(0.007) TCGA-69-7980-01 18 21343483 21343483 G C LAMA3 Missense_Mutation p.C393S 0.12 probably_damaging(1) TCGA-69-7980-01 18 2577750 2577750 G A NDC80 Missense_Mutation p.S62N 0.15 deleterious(0) possibly_damaging(0.868) TCGA-69-7980-01 18 2891450 2891450 C T EMILIN2 Missense_Mutation p.P442L 0.28 tolerated(0.98) benign(0.007) TCGA-69-7980-01 18 29795168 29795168 T A MEP1B Missense_Mutation p.L568Q 0.34 deleterious(0) probably_damaging(0.976) TCGA-69-7980-01 18 31314300 31314300 C A ASXL3 Silent p.R335R 0.12 TCGA-69-7980-01 18 32405235 32405235 A G DTNA Intron 0.11 TCGA-69-7980-01 18 42530239 42530240 - A SETBP1 Frame_Shift_Ins p.P313Afs*27 0.14 TCGA-69-7980-01 18 42530331 42530331 G C SETBP1 Silent p.V342V 0.20 TCGA-69-7980-01 18 43420203 43420203 C A SIGLEC15 Missense_Mutation p.P301Q 0.07 deleterious_low_confidence(0.02) benign(0.109) TCGA-69-7980-01 18 47017713 47017713 T A RPL17 Intron 0.12 TCGA-69-7980-01 18 47110077 47110077 C - LIPG Frame_Shift_Del p.R438Afs*7 0.15 TCGA-69-7980-01 18 5394744 5394744 A T EPB41L3 Missense_Mutation p.S1068T 0.07 deleterious(0.01) probably_damaging(0.957) TCGA-69-7980-01 18 55027519 55027519 C A ST8SIA3 3'UTR 0.11 TCGA-69-7980-01 18 56203946 56203946 G A ALPK2 Missense_Mutation p.P1158L 0.21 tolerated(0.22) benign(0.02) TCGA-69-7980-01 18 56247148 56247148 T C ALPK2 Missense_Mutation p.D287G 0.22 tolerated(0.19) benign(0.004) TCGA-69-7980-01 18 580575 580575 C A CETN1 Missense_Mutation p.A56D 0.53 deleterious(0) probably_damaging(0.975) TCGA-69-7980-01 18 61449703 61449703 C A SERPINB7 Missense_Mutation p.L33M 0.42 tolerated(0.05) probably_damaging(0.999) TCGA-69-7980-01 18 633426 633426 C T CLUL1 Silent p.L329L 0.19 TCGA-69-7980-01 18 63481777 63481777 A G CDH7 Missense_Mutation p.S188G 0.35 deleterious(0.01) probably_damaging(0.946) TCGA-69-7980-01 18 63548025 63548025 C G CDH7 Missense_Mutation p.I751M 0.08 tolerated(0.2) possibly_damaging(0.482) TCGA-69-7980-01 18 67563206 67563206 T A CD226 Missense_Mutation p.Q153L 0.52 deleterious(0.04) possibly_damaging(0.656) TCGA-69-7980-01 18 7011460 7011460 G T LAMA1 Missense_Mutation p.Q1176K 0.27 deleterious(0.02) benign(0.064) TCGA-69-7980-01 18 71796717 71796717 T C FBXO15 Silent p.L236L 0.23 TCGA-69-7980-01 18 72999519 72999519 C T TSHZ1 Silent p.L674L 0.16 TCGA-69-7980-01 18 77455237 77455237 G C CTDP1 Silent p.V109V 0.16 TCGA-69-7980-01 18 77477965 77477965 C T CTDP1 Missense_Mutation p.P789L 0.07 deleterious_low_confidence(0.01) benign(0.232) TCGA-69-7980-01 18 9255108 9255108 G C ANKRD12 Missense_Mutation p.E615Q 0.05 deleterious_low_confidence(0) possibly_damaging(0.752) TCGA-69-7980-01 19 1043466 1043466 G C ABCA7 Missense_Mutation p.M308I 0.26 tolerated(0.54) benign(0.135) TCGA-69-7980-01 19 11136108 11136108 G T SMARCA4 Missense_Mutation p.G1031V 0.11 probably_damaging(0.995) TCGA-69-7980-01 19 11892146 11892146 C T ZNF441 Missense_Mutation p.H503Y 0.38 tolerated(1) benign(0.006) TCGA-69-7980-01 19 11943217 11943217 C G ZNF440 Nonsense_Mutation p.S409* 0.20 TCGA-69-7980-01 19 12805682 12805682 C T FBXW9 Silent p.G160G 0.14 TCGA-69-7980-01 19 12805683 12805683 C A FBXW9 Missense_Mutation p.G160V 0.13 deleterious(0.01) probably_damaging(1) TCGA-69-7980-01 19 14037366 14037366 C A CC2D1A Silent p.L659L 0.10 TCGA-69-7980-01 19 1428883 1428883 G T DAZAP1 Missense_Mutation p.A197S 0.16 tolerated(0.84) unknown(0) TCGA-69-7980-01 19 18273784 18273784 G A PIK3R2 Missense_Mutation p.G373R 0.11 deleterious(0) probably_damaging(1) TCGA-69-7980-01 19 18368153 18368153 A C KIAA1683 Missense_Mutation p.F1314C 0.11 deleterious(0.03) benign(0.236) TCGA-69-7980-01 19 18649221 18649221 C A FKBP8 Missense_Mutation p.A193S 0.15 tolerated(0.17) possibly_damaging(0.506) TCGA-69-7980-01 19 18710436 18710436 G T CRLF1 Missense_Mutation p.D112E 0.15 tolerated(0.25) probably_damaging(0.996) TCGA-69-7980-01 19 18710443 18710443 G T CRLF1 Nonsense_Mutation p.S110* 0.18 TCGA-69-7980-01 19 19349079 19349079 C T NCAN Missense_Mutation p.R1090C 0.43 deleterious(0.01) possibly_damaging(0.549) TCGA-69-7980-01 19 1980211 1980211 G T CSNK1G2 3'UTR 0.29 TCGA-69-7980-01 19 22156743 22156743 C A ZNF208 Nonsense_Mutation p.G365* 0.15 TCGA-69-7980-01 19 22271347 22271347 C A ZNF257 Silent p.A265A 0.60 TCGA-69-7980-01 19 23542980 23542980 C T ZNF91 Missense_Mutation p.G934E 0.10 deleterious(0.03) probably_damaging(1) TCGA-69-7980-01 19 30935569 30935569 A G ZNF536 Missense_Mutation p.H367R 0.18 deleterious(0) probably_damaging(0.997) TCGA-69-7980-01 19 35823583 35823583 C T CD22 Silent p.F56F 0.12 TCGA-69-7980-01 19 36220984 36220984 G C KMT2B Missense_Mutation p.K1678N 0.18 probably_damaging(0.987) TCGA-69-7980-01 19 38817411 38817411 G T KCNK6 Silent p.R167R 0.21 TCGA-69-7980-01 19 38937331 38937331 C T RYR1 Intron 0.52 TCGA-69-7980-01 19 39517606 39517606 G A FBXO27 Silent p.L204L 0.59 TCGA-69-7980-01 19 39798904 39798904 T C LRFN1 Missense_Mutation p.Y562C 0.11 tolerated(0.63) probably_damaging(0.957) TCGA-69-7980-01 19 40430340 40430340 C A FCGBP Missense_Mutation p.A535S 0.15 probably_damaging(1) TCGA-69-7980-01 19 4170148 4170148 G T CREB3L3 Missense_Mutation p.C278F 0.22 deleterious(0) probably_damaging(0.989) TCGA-69-7980-01 19 42583941 42583941 C T ZNF574 Missense_Mutation p.P395S 0.22 tolerated(0.12) probably_damaging(0.96) TCGA-69-7980-01 19 42599776 42599776 C A POU2F2 Missense_Mutation p.G292V 0.61 deleterious(0) probably_damaging(1) TCGA-69-7980-01 19 42600287 42600287 C A POU2F2 Nonsense_Mutation p.E204* 0.41 TCGA-69-7980-01 19 42791820 42791820 G T CIC Nonsense_Mutation p.E236* 0.55 TCGA-69-7980-01 19 43257524 43257524 C A PSG8 3'Flank 0.16 TCGA-69-7980-01 19 43698701 43698701 C T PSG4 Missense_Mutation p.R345H 0.11 tolerated(0.53) benign(0.031) TCGA-69-7980-01 19 43762346 43762346 C A PSG9 Intron 0.52 TCGA-69-7980-01 19 43773566 43773566 G T PSG9 Silent p.A6A 0.15 TCGA-69-7980-01 19 44001348 44001348 C A PHLDB3 Missense_Mutation p.E249D 0.17 tolerated(0.07) benign(0.025) TCGA-69-7980-01 19 45593559 45593559 C T GEMIN7 Missense_Mutation p.R63W 0.09 deleterious(0) probably_damaging(0.989) TCGA-69-7980-01 19 45851263 45851263 G A KLC3 Silent p.R208R 0.18 TCGA-69-7980-01 19 49110431 49110431 C A SPACA4 Missense_Mutation p.L66M 0.08 tolerated(0.48) benign(0.017) TCGA-69-7980-01 19 49601690 49601690 C G SNRNP70 Missense_Mutation p.P91R 0.13 deleterious(0) probably_damaging(0.998) TCGA-69-7980-01 19 49934685 49934685 G C SLC17A7 Missense_Mutation p.L391V 0.14 deleterious(0.01) possibly_damaging(0.686) TCGA-69-7980-01 19 49993733 49993733 G A RPL13A Silent p.L52L 0.10 TCGA-69-7980-01 19 50195610 50195610 C G CPT1C Missense_Mutation p.S34C 0.17 deleterious(0.02) benign(0.038) TCGA-69-7980-01 19 50548106 50548106 G C ZNF473 Missense_Mutation p.D136H 0.14 deleterious(0) probably_damaging(0.953) TCGA-69-7980-01 19 51381863 51381863 G T KLK2 3'UTR 0.14 TCGA-69-7980-01 19 52001316 52001316 G T SIGLEC12 Missense_Mutation p.S454Y 0.31 deleterious(0) probably_damaging(1) TCGA-69-7980-01 19 5218454 5218454 C G PTPRS Missense_Mutation p.R1342T 0.05 deleterious(0.01) possibly_damaging(0.77) TCGA-69-7980-01 19 52954876 52954876 C A ZNF578 5'Flank 0.50 TCGA-69-7980-01 19 5456536 5456536 G A ZNRF4 Missense_Mutation p.R345Q 0.15 tolerated(0.32) benign(0.121) TCGA-69-7980-01 19 55377322 55377322 C A KIR3DL2 Missense_Mutation p.L355I 0.42 tolerated(0.47) benign(0.027) TCGA-69-7980-01 19 55897779 55897779 C G RPL28 Missense_Mutation p.I18M 0.12 tolerated(0.23) possibly_damaging(0.899) TCGA-69-7980-01 19 57290750 57290750 C A ZIM2 Missense_Mutation p.C246F 0.15 tolerated(0.11) benign(0.011) TCGA-69-7980-01 19 58132794 58132794 C T ZNF134 3'UTR 0.12 TCGA-69-7980-01 19 58213694 58213694 C T ZNF154 Missense_Mutation p.R208Q 0.13 tolerated(1) possibly_damaging(0.63) TCGA-69-7980-01 19 6495474 6495474 G T TUBB4A Missense_Mutation p.P346T 0.42 deleterious_low_confidence(0) probably_damaging(1) TCGA-69-7980-01 19 6590933 6590933 G T CD70 Silent p.V27V 0.15 TCGA-69-7980-01 19 6890521 6890521 C A EMR1 Missense_Mutation p.H21N 0.14 tolerated(0.38) benign(0) TCGA-69-7980-01 19 694890 694890 C A PRSS57 Missense_Mutation p.G54W 0.90 deleterious(0.01) probably_damaging(0.946) TCGA-69-7980-01 19 7584121 7584121 C T CTD-2207O23.12 Missense_Mutation p.R31C 0.13 unknown(0) TCGA-69-7980-01 19 7585782 7585782 G T ZNF358 Nonsense_Mutation p.E552* 0.17 TCGA-69-7980-01 19 7794745 7794745 C G CLEC4G Missense_Mutation p.Q235H 0.12 deleterious(0.02) benign(0.166) TCGA-69-7980-01 19 9056231 9056231 A C MUC16 Silent p.V10405V 0.28 TCGA-69-7980-01 19 9056232 9056232 A T MUC16 Missense_Mutation p.V10405D 0.29 benign(0.007) TCGA-69-7980-01 1 10197236 10197236 G C UBE4B Missense_Mutation p.R779T 0.15 deleterious(0.01) probably_damaging(0.926) TCGA-69-7980-01 1 102290757 102290757 C A OLFM3 Silent p.V139V 0.27 TCGA-69-7980-01 1 10363875 10363875 G T KIF1B Intron 0.21 TCGA-69-7980-01 1 10713921 10713921 C A CASZ1 Silent p.L731L 0.37 TCGA-69-7980-01 1 107599563 107599563 C T PRMT6 Missense_Mutation p.R76W 0.23 deleterious(0.02) possibly_damaging(0.696) TCGA-69-7980-01 1 110302000 110302000 C G EPS8L3 Missense_Mutation p.D89H 0.18 deleterious(0) probably_damaging(0.98) TCGA-69-7980-01 1 11298459 11298459 C A MTOR Missense_Mutation p.D668Y 0.34 deleterious(0) probably_damaging(0.997) TCGA-69-7980-01 1 11300539 11300539 T G MTOR Missense_Mutation p.Q536P 0.32 deleterious(0.01) possibly_damaging(0.715) TCGA-69-7980-01 1 118574335 118574335 G T SPAG17 Missense_Mutation p.P1197T 0.23 tolerated(0.33) benign(0.039) TCGA-69-7980-01 1 120284452 120284452 G C PHGDH Missense_Mutation p.E381Q 0.22 tolerated(0.58) benign(0.002) TCGA-69-7980-01 1 120458346 120458346 C A NOTCH2 Silent p.A2333A 0.37 TCGA-69-7980-01 1 12336868 12336868 G A VPS13D Missense_Mutation p.E1075K 0.12 benign(0.017) TCGA-69-7980-01 1 12677211 12677211 C T DHRS3 Missense_Mutation p.R48K 0.18 tolerated(0.2) probably_damaging(0.999) TCGA-69-7980-01 1 1290476 1290476 C T MXRA8 Missense_Mutation p.G179S 0.62 tolerated(0.05) probably_damaging(1) TCGA-69-7980-01 1 13001282 13001282 G T PRAMEF6 Missense_Mutation p.P134Q 0.08 tolerated(0.06) possibly_damaging(0.812) TCGA-69-7980-01 1 13001283 13001283 G T PRAMEF6 Missense_Mutation p.P134T 0.07 tolerated(0.31) benign(0.011) TCGA-69-7980-01 1 1325635 1325635 C T CCNL2 Silent p.S327S 0.24 TCGA-69-7980-01 1 145580549 145580549 A G PIAS3 Silent p.G283G 0.17 TCGA-69-7980-01 1 145826927 145826927 C G GPR89A Translation_Start_Site p.M1? 0.13 deleterious_low_confidence(0.01) benign(0.073) TCGA-69-7980-01 1 151992726 151992726 C T NBPF18P RNA 0.09 TCGA-69-7980-01 1 153122394 153122394 G T SPRR2G Missense_Mutation p.Q65K 0.24 unknown(0) TCGA-69-7980-01 1 153924717 153924717 C A CRTC2 Missense_Mutation p.Q258H 0.44 deleterious(0) probably_damaging(0.986) TCGA-69-7980-01 1 154247910 154247910 G T HAX1 Silent p.R235R 0.26 TCGA-69-7980-01 1 156316642 156316642 C G TSACC Missense_Mutation p.Q83E 0.05 deleterious(0) benign(0.388) TCGA-69-7980-01 1 156386590 156386590 G T C1orf61 Missense_Mutation p.N14K 0.39 tolerated_low_confidence(0.2) possibly_damaging(0.607) TCGA-69-7980-01 1 156507059 156507059 C G IQGAP3 Missense_Mutation p.Q1112H 0.11 deleterious(0.02) probably_damaging(0.992) TCGA-69-7980-01 1 156815791 156815791 C A INSRR Missense_Mutation p.R644L 0.43 deleterious(0.03) possibly_damaging(0.475) TCGA-69-7980-01 1 156914953 156914953 C A ARHGEF11 Missense_Mutation p.R950L 0.36 tolerated(0.11) benign(0.019) TCGA-69-7980-01 1 157494040 157494040 T A FCRL5 Intron 0.33 TCGA-69-7980-01 1 158045998 158045998 A T KIRREL Missense_Mutation p.I50F 0.26 tolerated(0.13) possibly_damaging(0.828) TCGA-69-7980-01 1 158817648 158817648 A C MNDA Missense_Mutation p.Q373P 0.04 deleterious(0.01) probably_damaging(0.981) TCGA-69-7980-01 1 160324062 160324062 C T NCSTN Missense_Mutation p.S445F 0.14 deleterious(0.02) benign(0.005) TCGA-69-7980-01 1 161168182 161168182 G T ADAMTS4 Missense_Mutation p.A79D 0.53 tolerated(0.3) benign(0.342) TCGA-69-7980-01 1 161953460 161953460 G T OLFML2B 3'UTR 0.30 TCGA-69-7980-01 1 162470701 162470701 A T UHMK1 Splice_Site p.X188_splice 0.44 TCGA-69-7980-01 1 162740159 162740159 T A DDR2 Missense_Mutation p.F454Y 0.44 tolerated(1) benign(0.002) TCGA-69-7980-01 1 162741853 162741853 C A DDR2 Missense_Mutation p.P515H 0.61 deleterious(0.02) benign(0.002) TCGA-69-7980-01 1 162825131 162825131 C A C1orf110 Missense_Mutation p.M111I 0.37 tolerated(0.24) benign(0.006) TCGA-69-7980-01 1 16355221 16355221 G A CLCNKA Intron 0.14 TCGA-69-7980-01 1 166839042 166839042 C T TADA1 Missense_Mutation p.E42K 0.20 deleterious(0.01) probably_damaging(0.991) TCGA-69-7980-01 1 167865910 167865910 G T ADCY10 Missense_Mutation p.P221H 0.51 tolerated(0.36) probably_damaging(0.98) TCGA-69-7980-01 1 16902836 16902836 T A NBPF1 Missense_Mutation p.Q682L 0.02 deleterious(0.04) benign(0.214) TCGA-69-7980-01 1 17272060 17272060 C A CROCC Missense_Mutation p.L699M 0.11 possibly_damaging(0.835) TCGA-69-7980-01 1 176905466 176905466 C A ASTN1 Silent p.L806L 0.34 TCGA-69-7980-01 1 178414696 178414696 G T RASAL2 Missense_Mutation p.G509V 0.27 tolerated(0.24) possibly_damaging(0.53) TCGA-69-7980-01 1 178834850 178834850 C A ANGPTL1 Missense_Mutation p.C21F 0.09 deleterious(0.04) benign(0.032) TCGA-69-7980-01 1 179460858 179460858 C A AXDND1 Silent p.S759S 0.25 TCGA-69-7980-01 1 180775672 180775672 C - XPR1 Frame_Shift_Del p.P222Lfs*26 0.26 TCGA-69-7980-01 1 181767606 181767606 C G CACNA1E Missense_Mutation p.S2193C 0.14 deleterious(0.01) probably_damaging(0.971) TCGA-69-7980-01 1 182353781 182353781 A G GLUL Missense_Mutation p.L294P 0.30 tolerated(0.13) benign(0.421) TCGA-69-7980-01 1 183525197 183525197 C G NCF2 3'UTR 0.15 TCGA-69-7980-01 1 183529285 183529285 G C NCF2 Missense_Mutation p.Q472E 0.10 tolerated(0.12) benign(0.241) TCGA-69-7980-01 1 183913414 183913414 T A COLGALT2 Missense_Mutation p.D438V 0.39 deleterious(0) probably_damaging(0.997) TCGA-69-7980-01 1 186908349 186908349 C A PLA2G4A Missense_Mutation p.T302K 0.37 deleterious(0.01) probably_damaging(0.97) TCGA-69-7980-01 1 19166745 19166746 CC T TAS1R2 Frame_Shift_Del p.G623Sfs*72 0.09 TCGA-69-7980-01 1 192127878 192127878 C A RGS18 Silent p.A37A 0.34 TCGA-69-7980-01 1 192780233 192780233 A G RGS2 Missense_Mutation p.R133G 0.27 deleterious(0) benign(0.064) TCGA-69-7980-01 1 196716404 196716404 G T CFH Missense_Mutation p.W1219C 0.41 tolerated(0.18) benign(0.16) TCGA-69-7980-01 1 198673613 198673613 C GTGG PTPRC In_Frame_Ins p.S224delinsCG 0.28 TCGA-69-7980-01 1 201038597 201038597 C T CACNA1S Intron 0.16 TCGA-69-7980-01 1 201981192 201981192 G A ELF3 Missense_Mutation p.D91N 0.22 tolerated(0.39) probably_damaging(1) TCGA-69-7980-01 1 202571541 202571541 G T SYT2 Missense_Mutation p.L200M 0.31 deleterious(0) probably_damaging(1) TCGA-69-7980-01 1 203669355 203669355 G A ATP2B4 Missense_Mutation p.G224E 0.04 deleterious(0) probably_damaging(1) TCGA-69-7980-01 1 203830731 203830731 A T SNRPE 5'Flank 0.33 TCGA-69-7980-01 1 205042860 205042860 G A CNTN2 Silent p.A1030A 0.16 TCGA-69-7980-01 1 205197741 205197741 G A TMCC2 Missense_Mutation p.D17N 0.33 deleterious_low_confidence(0.03) benign(0.02) TCGA-69-7980-01 1 205779211 205779211 A G SLC41A1 Missense_Mutation p.L120S 0.18 deleterious(0) probably_damaging(0.997) TCGA-69-7980-01 1 206317609 206317609 C T CTSE Silent p.L11L 0.22 TCGA-69-7980-01 1 206317610 206317610 C T CTSE Silent p.L12L 0.21 TCGA-69-7980-01 1 213277908 213277908 C T RPS6KC1 Silent p.F125F 0.14 TCGA-69-7980-01 1 216173749 216173749 T C USH2A Missense_Mutation p.I2161V 0.09 benign(0) TCGA-69-7980-01 1 220440958 220440958 A T RAB3GAP2 Intron 0.37 TCGA-69-7980-01 1 222717462 222717462 C A HHIPL2 Missense_Mutation p.G131C 0.29 deleterious(0) probably_damaging(0.998) TCGA-69-7980-01 1 223283956 223283956 G A TLR5 Silent p.I806I 0.46 TCGA-69-7980-01 1 228346354 228346354 C A GJC2 Missense_Mutation p.R299S 0.69 deleterious(0.04) probably_damaging(0.972) TCGA-69-7980-01 1 22965874 22965874 G A C1QA Missense_Mutation p.G238S 0.08 deleterious(0) probably_damaging(1) TCGA-69-7980-01 1 22965875 22965875 G T C1QA Missense_Mutation p.G238V 0.08 deleterious(0) probably_damaging(1) TCGA-69-7980-01 1 237777705 237777705 A T RYR2 Silent p.P1759P 0.32 TCGA-69-7980-01 1 237817625 237817625 G C RYR2 Missense_Mutation p.G2626R 0.37 possibly_damaging(0.669) TCGA-69-7980-01 1 238046086 238046086 G T ZP4 Missense_Mutation p.P484H 0.27 deleterious(0) possibly_damaging(0.88) TCGA-69-7980-01 1 238048129 238048129 C A ZP4 Missense_Mutation p.V444L 0.33 deleterious(0.01) possibly_damaging(0.557) TCGA-69-7980-01 1 23845603 23845603 G A E2F2 Nonsense_Mutation p.Q253* 0.14 TCGA-69-7980-01 1 24077613 24077613 A C TCEB3 Missense_Mutation p.D199A 0.28 deleterious(0.02) benign(0.421) TCGA-69-7980-01 1 248458101 248458101 G T OR2T12 Silent p.P260P 0.36 TCGA-69-7980-01 1 248458102 248458102 G T OR2T12 Missense_Mutation p.P260H 0.37 deleterious(0) probably_damaging(0.996) TCGA-69-7980-01 1 248487103 248487103 C A OR2M7 Missense_Mutation p.L256F 0.13 tolerated(0.21) possibly_damaging(0.616) TCGA-69-7980-01 1 248756939 248756939 G T OR2T10 Missense_Mutation p.T44K 0.23 deleterious(0) benign(0.053) TCGA-69-7980-01 1 26139212 26139212 G A SEPN1 Missense_Mutation p.R439Q 0.20 tolerated(0.21) benign(0.011) TCGA-69-7980-01 1 27695848 27695848 C A FCN3 Missense_Mutation p.R260L 0.13 tolerated(0.67) benign(0.041) TCGA-69-7980-01 1 32560511 32560511 G T TMEM39B Missense_Mutation p.A352S 0.07 tolerated(0.15) benign(0.22) TCGA-69-7980-01 1 33236708 33236708 C G KIAA1522 Nonsense_Mutation p.S643* 0.11 TCGA-69-7980-01 1 33361010 33361010 G A TMEM54 Silent p.L164L 0.08 TCGA-69-7980-01 1 34037242 34037242 G T CSMD2 Missense_Mutation p.A2618D 0.49 tolerated(0.19) probably_damaging(0.969) TCGA-69-7980-01 1 35854605 35854605 A G ZMYM4 Silent p.V786V 0.04 TCGA-69-7980-01 1 3701738 3701738 C A LRRC47 Missense_Mutation p.K369N 0.37 deleterious(0) probably_damaging(0.984) TCGA-69-7980-01 1 38334220 38334220 C G INPP5B Missense_Mutation p.E752Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-69-7980-01 1 40124910 40124910 C A NT5C1A Missense_Mutation p.Q330H 0.15 tolerated(0.12) benign(0.316) TCGA-69-7980-01 1 44878028 44878028 G T RNF220 Missense_Mutation p.D87Y 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-69-7980-01 1 45977049 45977049 G C PRDX1 Missense_Mutation p.I184M 0.20 tolerated(0.24) probably_damaging(1) TCGA-69-7980-01 1 46655023 46655023 C A POMGNT1 Nonsense_Mutation p.E626* 0.27 TCGA-69-7980-01 1 46714216 46714216 G C RAD54L Missense_Mutation p.K12N 0.15 deleterious(0.02) benign(0.305) TCGA-69-7980-01 1 54427715 54427715 G A LRRC42 Missense_Mutation p.E245K 0.12 tolerated(0.84) benign(0.002) TCGA-69-7980-01 1 54722799 54722799 C A SSBP3 Splice_Site p.X169_splice 0.44 TCGA-69-7980-01 1 57411547 57411548 CC G C8B Frame_Shift_Del p.G351Rfs*10 0.35 TCGA-69-7980-01 1 57602315 57602315 C A DAB1 Splice_Site p.X70_splice 0.19 TCGA-69-7980-01 1 6527588 6527588 C G PLEKHG5 3'UTR 0.15 TCGA-69-7980-01 1 70339210 70339210 C A LRRC7 Intron 0.57 TCGA-69-7980-01 1 70541908 70541909 CC A LRRC7 Frame_Shift_Del p.T1422Nfs*10 0.26 TCGA-69-7980-01 1 71478037 71478037 G A PTGER3 Missense_Mutation p.P343L 0.57 deleterious(0) probably_damaging(1) TCGA-69-7980-01 1 75699726 75699726 T G SLC44A5 Silent p.I266I 0.25 TCGA-69-7980-01 1 7724846 7724846 G A CAMTA1 Missense_Mutation p.V747M 0.15 tolerated_low_confidence(0.13) probably_damaging(0.952) TCGA-69-7980-01 1 877627 877627 C A SAMD11 Silent p.T327T 0.25 TCGA-69-7980-01 1 94041662 94041662 C G BCAR3 Missense_Mutation p.E571Q 0.04 tolerated(0.21) benign(0.012) TCGA-69-7980-01 1 94512642 94512642 G T ABCA4 Missense_Mutation p.F917L 0.31 tolerated(0.69) benign(0.128) TCGA-69-7980-01 20 11903963 11903963 C T BTBD3 Silent p.F406F 0.13 TCGA-69-7980-01 20 20037345 20037345 C A C20orf26 Nonsense_Mutation p.C16* 0.75 TCGA-69-7980-01 20 20279030 20279030 G C C20orf26 Missense_Mutation p.S1141T 0.78 deleterious(0) benign(0.371) TCGA-69-7980-01 20 23016324 23016324 C G SSTR4 Silent p.V68V 0.14 TCGA-69-7980-01 20 23545482 23545482 C T CST9L 3'UTR 0.13 TCGA-69-7980-01 20 2463909 2463909 G A ZNF343 Silent p.V566V 0.07 TCGA-69-7980-01 20 307448 307448 G A SOX12 Missense_Mutation p.E294K 0.15 deleterious(0) unknown(0) TCGA-69-7980-01 20 3129718 3129718 C A FASTKD5 5'UTR 0.09 TCGA-69-7980-01 20 32328721 32328721 G T ZNF341 Missense_Mutation p.Q15H 0.10 deleterious(0) probably_damaging(0.999) TCGA-69-7980-01 20 35386512 35386512 C A DSN1 Nonsense_Mutation p.E235* 0.33 TCGA-69-7980-01 20 3653514 3653514 T C ADAM33 Missense_Mutation p.S389G 0.68 deleterious(0.01) probably_damaging(0.91) TCGA-69-7980-01 20 3653515 3653515 G T ADAM33 Nonsense_Mutation p.C388* 0.71 TCGA-69-7980-01 20 36841992 36841992 G A KIAA1755 Silent p.L1019L 0.18 TCGA-69-7980-01 20 42969876 42969876 C A R3HDML Missense_Mutation p.A101D 0.45 deleterious(0) probably_damaging(0.999) TCGA-69-7980-01 20 42969877 42969877 C A R3HDML Silent p.A101A 0.44 TCGA-69-7980-01 20 44592118 44592118 C A ZNF335 Silent p.S509S 0.74 TCGA-69-7980-01 20 44596595 44596595 C G ZNF335 Missense_Mutation p.D198H 0.12 deleterious(0) probably_damaging(0.984) TCGA-69-7980-01 20 46365657 46365657 G T SULF2 Missense_Mutation p.R69S 0.33 deleterious(0.03) possibly_damaging(0.889) TCGA-69-7980-01 20 47569250 47569250 G T ARFGEF2 Silent p.L144L 0.10 TCGA-69-7980-01 20 50140440 50140440 C A NFATC2 Nonsense_Mutation p.E114* 0.24 TCGA-69-7980-01 20 5167438 5167438 C T CDS2 Silent p.L312L 0.75 TCGA-69-7980-01 20 55108525 55108525 G T FAM209B Missense_Mutation p.R43L 0.11 tolerated(0.14) probably_damaging(0.988) TCGA-69-7980-01 20 8609011 8609011 T A PLCB1 Missense_Mutation p.V106E 0.11 deleterious(0) probably_damaging(0.943) TCGA-69-7980-01 21 10906845 10906845 A T TPTE 3'UTR 0.27 TCGA-69-7980-01 21 11039010 11039010 C T BAGE2 RNA 0.07 TCGA-69-7980-01 21 45678524 45678524 T A DNMT3L Missense_Mutation p.K133M 0.42 deleterious(0) possibly_damaging(0.902) TCGA-69-7980-01 21 45929228 45929228 C G TSPEAR Missense_Mutation p.E536D 0.32 tolerated(1) benign(0.006) TCGA-69-7980-01 21 45970596 45970596 G C KRTAP10-2 Nonsense_Mutation p.S249* 0.16 TCGA-69-7980-01 21 47987424 47987424 G T DIP2A Silent p.V1535V 0.44 TCGA-69-7980-01 22 16449149 16449149 G T OR11H1 Nonsense_Mutation p.S219* 0.33 TCGA-69-7980-01 22 18178955 18178955 T A BCL2L13 Silent p.V145V 0.16 TCGA-69-7980-01 22 19455527 19455527 C T UFD1L Splice_Site p.X98_splice 0.10 TCGA-69-7980-01 22 21385387 21385387 C A SLC7A4 Missense_Mutation p.A239S 0.30 tolerated(0.13) benign(0.364) TCGA-69-7980-01 22 21385388 21385388 C T SLC7A4 Missense_Mutation p.M238I 0.30 tolerated(0.25) possibly_damaging(0.619) TCGA-69-7980-01 22 21991024 21991024 G C CCDC116 Missense_Mutation p.E503Q 0.14 tolerated(0.13) benign(0.437) TCGA-69-7980-01 22 22453554 22453554 C A IGLV8-61 Silent p.T100T 0.73 TCGA-69-7980-01 22 22516916 22516916 G T IGLV4-60 Missense_Mutation p.L68F 0.33 deleterious(0.01) probably_damaging(0.947) TCGA-69-7980-01 22 22868276 22868276 T - ZNF280A 3'UTR 0.31 TCGA-69-7980-01 22 26239702 26239702 G T MYO18B Missense_Mutation p.G1070V 0.63 deleterious(0.01) possibly_damaging(0.735) TCGA-69-7980-01 22 28195093 28195093 C A MN1 Missense_Mutation p.G480V 0.16 possibly_damaging(0.641) TCGA-69-7980-01 22 29726681 29726681 C T AP1B1 Missense_Mutation p.A848T 0.27 tolerated(0.24) benign(0.014) TCGA-69-7980-01 22 33402572 33402572 G C SYN3 Missense_Mutation p.Q26E 0.36 deleterious(0.04) unknown(0) TCGA-69-7980-01 22 38111839 38111839 A T TRIOBP Missense_Mutation p.R176W 0.22 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-69-7980-01 22 42464492 42464492 G A NAGA Missense_Mutation p.R35C 0.08 deleterious(0) probably_damaging(0.993) TCGA-69-7980-01 22 46345799 46345799 C A WNT7B Splice_Site p.X100_splice 0.74 TCGA-69-7980-01 22 50439231 50439231 C A IL17REL Missense_Mutation p.Q57H 0.12 tolerated(0.15) benign(0.211) TCGA-69-7980-01 2 105858897 105858897 C G GPR45 Silent p.A194A 0.54 TCGA-69-7980-01 2 107423223 107423223 C G ST6GAL2 Missense_Mutation p.G501R 0.53 benign(0.02) TCGA-69-7980-01 2 108626829 108626829 C A SLC5A7 Missense_Mutation p.P419T 0.32 deleterious(0) probably_damaging(1) TCGA-69-7980-01 2 109085530 109085530 A T GCC2 Missense_Mutation p.Q104L 0.27 deleterious(0.01) benign(0.073) TCGA-69-7980-01 2 112751865 112751865 G T MERTK Missense_Mutation p.R445L 0.31 tolerated(0.66) benign(0.001) TCGA-69-7980-01 2 118575196 118575196 C A DDX18 Missense_Mutation p.Q88K 0.07 tolerated_low_confidence(1) benign(0) TCGA-69-7980-01 2 131356263 131356263 C T CFC1 Missense_Mutation p.G67S 0.26 tolerated(0.34) benign(0.177) TCGA-69-7980-01 2 131521517 131521517 A T AMER3 Silent p.T624T 0.32 TCGA-69-7980-01 2 131796570 131796570 G A ARHGEF4 Missense_Mutation p.D238N 0.11 deleterious(0) probably_damaging(0.986) TCGA-69-7980-01 2 132240245 132240245 C G TUBA3D Missense_Mutation p.H393D 0.12 deleterious_low_confidence(0) benign(0.023) TCGA-69-7980-01 2 136389479 136389479 A G R3HDM1 Silent p.L202L 0.15 TCGA-69-7980-01 2 136609035 136609035 C A MCM6 Silent p.V618V 0.62 TCGA-69-7980-01 2 141762928 141762928 C A LRP1B Missense_Mutation p.D827Y 0.12 benign(0.04) TCGA-69-7980-01 2 143742741 143742741 G T KYNU Missense_Mutation p.C273F 0.12 deleterious(0) probably_damaging(1) TCGA-69-7980-01 2 143913201 143913201 G T ARHGAP15 Missense_Mutation p.D48Y 0.25 deleterious(0) probably_damaging(0.924) TCGA-69-7980-01 2 152319895 152319895 A C RIF1 Silent p.S1287S 0.08 TCGA-69-7980-01 2 152487259 152487259 C A NEB Missense_Mutation p.L3231F 0.20 probably_damaging(1) TCGA-69-7980-01 2 152506830 152506830 C G NEB Missense_Mutation p.E2431Q 0.20 probably_damaging(0.983) TCGA-69-7980-01 2 15519904 15519904 C A NBAS Missense_Mutation p.A1138S 0.59 deleterious(0) probably_damaging(0.999) TCGA-69-7980-01 2 160007013 160007013 G A TANC1 Missense_Mutation p.E210K 0.10 tolerated(0.13) benign(0.254) TCGA-69-7980-01 2 16086175 16086175 C G MYCN Missense_Mutation p.Q451E 0.14 deleterious(0.01) benign(0.176) TCGA-69-7980-01 2 162894883 162894883 G A DPP4 Missense_Mutation p.P181L 0.09 tolerated(0.08) benign(0.041) TCGA-69-7980-01 2 163003990 163003990 C A GCG Missense_Mutation p.D43Y 0.16 deleterious(0.04) benign(0.05) TCGA-69-7980-01 2 163360955 163360955 G A KCNH7 Nonsense_Mutation p.Q376* 0.16 TCGA-69-7980-01 2 166769059 166769059 C A TTC21B Missense_Mutation p.G763C 0.07 deleterious(0.03) probably_damaging(0.999) TCGA-69-7980-01 2 168921829 168921829 C A STK39 Missense_Mutation p.Q435H 0.53 deleterious(0.03) benign(0.401) TCGA-69-7980-01 2 170657490 170657490 A T SSB Missense_Mutation p.N7I 0.28 tolerated(0.21) benign(0.047) TCGA-69-7980-01 2 171812965 171812965 A T GORASP2 Missense_Mutation p.N240I 0.11 tolerated(0.1) benign(0) TCGA-69-7980-01 2 174820238 174820238 G C SP3 Silent p.S334S 0.15 TCGA-69-7980-01 2 175614771 175614771 A G CHRNA1 Missense_Mutation p.M327T 0.13 deleterious(0.02) benign(0.241) TCGA-69-7980-01 2 177134358 177134358 A G MTX2 Translation_Start_Site p.M1? 0.64 deleterious_low_confidence(0) possibly_damaging(0.754) TCGA-69-7980-01 2 179315099 179315099 C T PRKRA Silent p.P35P 0.08 TCGA-69-7980-01 2 179414326 179414326 G A TTN Missense_Mutation p.S30708F 0.11 TCGA-69-7980-01 2 179434805 179434805 T C TTN Missense_Mutation p.T25352A 0.17 TCGA-69-7980-01 2 179434807 179434807 C T TTN Nonsense_Mutation p.W25351* 0.16 TCGA-69-7980-01 2 179437740 179437740 G T TTN Silent p.V24373V 0.22 TCGA-69-7980-01 2 179600657 179600657 G T TTN Missense_Mutation p.P4839H 0.27 TCGA-69-7980-01 2 179638309 179638309 G C TTN Missense_Mutation p.Q2492E 0.11 TCGA-69-7980-01 2 180818938 180818938 T C CWC22 Silent p.P561P 0.24 TCGA-69-7980-01 2 182542546 182542546 C A NEUROD1 Missense_Mutation p.A348S 0.32 tolerated(0.32) benign(0.074) TCGA-69-7980-01 2 185802271 185802271 A C ZNF804A Missense_Mutation p.L716F 0.11 deleterious(0.04) benign(0.366) TCGA-69-7980-01 2 189876385 189876385 T C COL3A1 Missense_Mutation p.F1429S 0.21 unknown(0) TCGA-69-7980-01 2 189909940 189909940 C G COL5A2 Missense_Mutation p.G1110R 0.42 unknown(0) TCGA-69-7980-01 2 196865601 196865601 C T DNAH7 Missense_Mutation p.V394I 0.29 tolerated(0.31) benign(0.002) TCGA-69-7980-01 2 197143300 197143300 C A HECW2 Silent p.L1029L 0.26 TCGA-69-7980-01 2 198436724 198436724 C G RFTN2 3'UTR 0.35 TCGA-69-7980-01 2 20175335 20175335 C A WDR35 Missense_Mutation p.A176S 0.64 tolerated(0.21) benign(0.006) TCGA-69-7980-01 2 203424452 203424452 C T BMPR2 Missense_Mutation p.S967L 0.31 deleterious(0) possibly_damaging(0.504) TCGA-69-7980-01 2 203424547 203424547 G T BMPR2 Nonsense_Mutation p.E999* 0.23 TCGA-69-7980-01 2 209046029 209046029 C A C2orf80 Silent p.L69L 0.15 TCGA-69-7980-01 2 210642157 210642157 A T UNC80 Silent p.P158P 0.54 TCGA-69-7980-01 2 211454856 211454856 C T CPS1 Silent p.P252P 0.19 TCGA-69-7980-01 2 211504764 211504764 C A CPS1 Silent p.G986G 0.29 TCGA-69-7980-01 2 212295709 212295709 C G ERBB4 Missense_Mutation p.L868F 0.14 deleterious(0) benign(0.045) TCGA-69-7980-01 2 212568860 212568860 G T ERBB4 Missense_Mutation p.L420M 0.09 deleterious(0) probably_damaging(1) TCGA-69-7980-01 2 219855051 219855051 C G CRYBA2 Missense_Mutation p.E173Q 0.13 deleterious(0.02) probably_damaging(1) TCGA-69-7980-01 2 220162135 220162135 C A PTPRN Missense_Mutation p.M636I 0.55 deleterious(0) probably_damaging(0.93) TCGA-69-7980-01 2 220397746 220397746 C A ASIC4 Intron 0.41 TCGA-69-7980-01 2 220473406 220473406 G A STK11IP Missense_Mutation p.V580M 0.19 tolerated(0.16) probably_damaging(0.997) TCGA-69-7980-01 2 220505639 220505639 G T SLC4A3 Missense_Mutation p.R1219S 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-69-7980-01 2 224866523 224866523 G T SERPINE2 Missense_Mutation p.S44Y 0.13 deleterious(0) probably_damaging(1) TCGA-69-7980-01 2 225635044 225635044 G T DOCK10 Missense_Mutation p.Q2110K 0.43 tolerated(0.89) benign(0.217) TCGA-69-7980-01 2 226447034 226447034 G T NYAP2 Missense_Mutation p.V301L 0.17 tolerated(0.61) benign(0.009) TCGA-69-7980-01 2 227663346 227663346 C T IRS1 Missense_Mutation p.E37K 0.13 deleterious(0.04) possibly_damaging(0.695) TCGA-69-7980-01 2 227953497 227953497 T C COL4A4 Missense_Mutation p.M499V 0.16 benign(0.22) TCGA-69-7980-01 2 230633405 230633405 G A TRIP12 Silent p.L1903L 0.14 TCGA-69-7980-01 2 233245181 233245181 C A ALPP Missense_Mutation p.P282T 0.18 deleterious(0.04) benign(0.004) TCGA-69-7980-01 2 233349546 233349546 C A ECEL1 Missense_Mutation p.V342L 0.17 tolerated(0.09) benign(0.228) TCGA-69-7980-01 2 233409292 233409292 T G CHRNG Splice_Site p.X417_splice 0.21 TCGA-69-7980-01 2 233655812 233655812 A G GIGYF2 Missense_Mutation p.N364S 0.37 benign(0.109) TCGA-69-7980-01 2 234442344 234442344 C A USP40 Missense_Mutation p.A429S 0.15 tolerated(0.6) benign(0.006) TCGA-69-7980-01 2 234637790 234637790 G T UGT1A3 Missense_Mutation p.Q6H 0.11 tolerated_low_confidence(0.57) benign(0.332) TCGA-69-7980-01 2 234652454 234652454 C A UGT1A10 Intron 0.17 TCGA-69-7980-01 2 238270446 238270446 C A COL6A3 Missense_Mutation p.G2031V 0.37 possibly_damaging(0.856) TCGA-69-7980-01 2 238275874 238275874 C A COL6A3 Missense_Mutation p.R1652S 0.41 probably_damaging(0.99) TCGA-69-7980-01 2 239057733 239057733 C T KLHL30 Silent p.L475L 0.15 TCGA-69-7980-01 2 26689665 26689665 C A OTOF Missense_Mutation p.G1473C 0.29 deleterious(0.01) probably_damaging(0.941) TCGA-69-7980-01 2 29274845 29274845 G C FAM179A Silent p.T982T 0.19 TCGA-69-7980-01 2 37283652 37283652 C T HEATR5B Missense_Mutation p.G777E 0.26 deleterious(0.03) possibly_damaging(0.738) TCGA-69-7980-01 2 38179227 38179227 C T RMDN2 Missense_Mutation p.S290F 0.10 deleterious(0.05) possibly_damaging(0.775) TCGA-69-7980-01 2 39431680 39431680 C G CDKL4 Missense_Mutation p.A148P 0.14 deleterious(0) probably_damaging(0.919) TCGA-69-7980-01 2 48807757 48807757 C T STON1-GTF2A1L 5'UTR 0.19 TCGA-69-7980-01 2 61144153 61144153 G T REL Splice_Site p.X179_splice 0.43 TCGA-69-7980-01 2 68882544 68882544 C G PROKR1 Missense_Mutation p.L340V 0.27 tolerated(0.86) benign(0.003) TCGA-69-7980-01 2 69472717 69472717 C A ANTXR1 3'UTR 0.25 TCGA-69-7980-01 2 71892384 71892384 G C DYSF Missense_Mutation p.R1756P 0.25 tolerated(0.24) benign(0.124) TCGA-69-7980-01 2 74725136 74725136 G A LBX2 Missense_Mutation p.P168L 0.22 deleterious(0.03) benign(0.011) TCGA-69-7980-01 2 77745498 77745498 C A LRRTM4 Silent p.S499S 0.42 TCGA-69-7980-01 2 79350055 79350055 G T REG1A Missense_Mutation p.C137F 0.38 deleterious(0) probably_damaging(0.981) TCGA-69-7980-01 2 87017616 87017616 C A CD8A Missense_Mutation p.A80S 0.22 tolerated(0.42) benign(0.056) TCGA-69-7980-01 2 87017617 87017617 C T CD8A Silent p.K79K 0.23 TCGA-69-7980-01 2 90458623 90458623 C A CH17-132F21.1 Missense_Mutation p.P100H 0.04 TCGA-69-7980-01 2 9676042 9676042 T A ADAM17 Missense_Mutation p.D124V 0.09 deleterious(0.03) benign(0.431) TCGA-69-7980-01 2 98340655 98340655 C G ZAP70 Missense_Mutation p.H52Q 0.15 tolerated(0.11) possibly_damaging(0.489) TCGA-69-7980-01 2 98852870 98852870 G T VWA3B Missense_Mutation p.A816S 0.20 tolerated(0.51) benign(0.01) TCGA-69-7980-01 2 99234748 99234748 A G UNC50 Missense_Mutation p.Y254C 0.16 deleterious(0) probably_damaging(1) TCGA-69-7980-01 3 101023064 101023064 C T IMPG2 Missense_Mutation p.D143N 0.67 tolerated(0.25) benign(0.02) TCGA-69-7980-01 3 10400455 10400455 C A ATP2B2 Missense_Mutation p.D686Y 0.25 deleterious(0) possibly_damaging(0.764) TCGA-69-7980-01 3 10401723 10401723 G T ATP2B2 Missense_Mutation p.Q582K 0.46 tolerated(0.51) benign(0.071) TCGA-69-7980-01 3 108572674 108572674 C G TRAT1 Missense_Mutation p.P171A 0.25 deleterious(0) probably_damaging(1) TCGA-69-7980-01 3 109028078 109028078 T A DPPA2 Missense_Mutation p.K94M 0.41 deleterious(0.02) benign(0.431) TCGA-69-7980-01 3 111312970 111312970 C G ZBED2 Missense_Mutation p.E27Q 0.47 tolerated_low_confidence(0.18) benign(0.147) TCGA-69-7980-01 3 111432915 111432915 C A PLCXD2 Missense_Mutation p.P269H 0.29 deleterious(0) probably_damaging(0.999) TCGA-69-7980-01 3 120393758 120393758 T C HGD Missense_Mutation p.N56D 0.04 deleterious(0) probably_damaging(0.965) TCGA-69-7980-01 3 128204775 128204775 C T GATA2 Silent p.K222K 0.16 TCGA-69-7980-01 3 128758633 128758633 C A EFCC1 Missense_Mutation p.P580H 0.66 deleterious(0) probably_damaging(0.912) TCGA-69-7980-01 3 133666128 133666128 G A SLCO2A1 Missense_Mutation p.P423S 0.19 tolerated(0.13) benign(0.023) TCGA-69-7980-01 3 13441297 13441297 G A NUP210 Nonsense_Mutation p.Q78* 0.45 TCGA-69-7980-01 3 140178588 140178588 T A CLSTN2 Missense_Mutation p.I400N 0.10 deleterious(0) probably_damaging(0.988) TCGA-69-7980-01 3 140281710 140281710 G T CLSTN2 Missense_Mutation p.W757L 0.21 tolerated(0.34) benign(0.017) TCGA-69-7980-01 3 140281711 140281711 G T CLSTN2 Missense_Mutation p.W757C 0.21 tolerated(0.05) possibly_damaging(0.865) TCGA-69-7980-01 3 141328870 141328870 T C RASA2 Silent p.Y827Y 0.76 TCGA-69-7980-01 3 146239458 146239458 C A PLSCR1 Missense_Mutation p.G204V 0.36 deleterious(0) probably_damaging(1) TCGA-69-7980-01 3 15123931 15123931 C T ZFYVE20 Silent p.K261K 0.16 TCGA-69-7980-01 3 158072675 158072675 A G RSRC1 Silent p.L187L 0.45 TCGA-69-7980-01 3 160150941 160150941 G A SMC4 Missense_Mutation p.E1220K 0.14 deleterious(0) probably_damaging(0.999) TCGA-69-7980-01 3 172365893 172365893 G T NCEH1 Silent p.I82I 0.17 TCGA-69-7980-01 3 179051405 179051405 A C ZNF639 Missense_Mutation p.D218A 0.76 tolerated(0.26) possibly_damaging(0.492) TCGA-69-7980-01 3 186969535 186969535 C T MASP1 Missense_Mutation p.E300K 0.11 tolerated(0.19) benign(0.001) TCGA-69-7980-01 3 196386878 196386878 G T NRROS Nonsense_Mutation p.E122* 0.34 TCGA-69-7980-01 3 20161127 20161127 C A KAT2B Nonsense_Mutation p.Y396* 0.13 TCGA-69-7980-01 3 2924894 2924894 G A CNTN4 Missense_Mutation p.G240R 0.59 deleterious(0) probably_damaging(0.999) TCGA-69-7980-01 3 30733001 30733001 C T TGFBR2 Silent p.F563F 0.10 TCGA-69-7980-01 3 33174160 33174160 G T CRTAP Missense_Mutation p.G346C 0.19 deleterious(0) possibly_damaging(0.885) TCGA-69-7980-01 3 36876324 36876324 C A TRANK1 Missense_Mutation p.Q1820H 0.39 tolerated(0.11) benign(0.031) TCGA-69-7980-01 3 38835286 38835286 T A SCN10A Silent p.A72A 0.49 TCGA-69-7980-01 3 3886635 3886635 C A LRRN1 Missense_Mutation p.Q104K 0.29 deleterious(0) probably_damaging(0.968) TCGA-69-7980-01 3 3887802 3887802 G A LRRN1 Missense_Mutation p.D493N 0.16 deleterious(0) probably_damaging(0.927) TCGA-69-7980-01 3 42133018 42133018 C G TRAK1 Silent p.L19L 0.16 TCGA-69-7980-01 3 42727389 42727389 G C KLHL40 Missense_Mutation p.E93D 0.05 tolerated(0.52) benign(0.05) TCGA-69-7980-01 3 46943287 46943287 G A PTH1R Missense_Mutation p.R383Q 0.37 deleterious(0) probably_damaging(1) TCGA-69-7980-01 3 47371576 47371576 G T KLHL18 Silent p.L179L 0.43 TCGA-69-7980-01 3 47371577 47371577 C G KLHL18 Missense_Mutation p.P180A 0.43 tolerated(0.15) benign(0.004) TCGA-69-7980-01 3 48693266 48693266 C G CELSR3 Missense_Mutation p.Q1548H 0.20 deleterious(0.04) benign(0.279) TCGA-69-7980-01 3 49138787 49138787 C T QARS Splice_Site p.X292_splice 0.42 TCGA-69-7980-01 3 49758500 49758500 C T RNF123 Silent p.I1262I 0.17 TCGA-69-7980-01 3 50255703 50255703 C G SLC38A3 Intron 0.31 TCGA-69-7980-01 3 52818319 52818319 G T ITIH1 Silent p.T411T 0.32 TCGA-69-7980-01 3 73440201 73440201 C G PDZRN3 Missense_Mutation p.D441H 0.16 deleterious(0) probably_damaging(0.991) TCGA-69-7980-01 3 78719311 78719311 C A ROBO1 Missense_Mutation p.V495F 0.33 tolerated(0.3) possibly_damaging(0.895) TCGA-69-7980-01 3 87027684 87027684 A T VGLL3 Missense_Mutation p.L132Q 0.42 deleterious(0.01) possibly_damaging(0.759) TCGA-69-7980-01 3 97852446 97852446 C G OR5H1 Missense_Mutation p.T302R 0.05 tolerated(1) benign(0) TCGA-69-7980-01 3 98251467 98251467 T C GPR15 Missense_Mutation p.L197P 0.06 deleterious(0) probably_damaging(0.999) TCGA-69-7980-01 3 99891180 99891180 G A CMSS1 Silent p.L200L 0.09 TCGA-69-7980-01 3 9991120 9991120 C A PRRT3 Missense_Mutation p.G227V 0.48 deleterious_low_confidence(0.02) benign(0.033) TCGA-69-7980-01 4 115997976 115997976 T G NDST4 Missense_Mutation p.T73P 0.66 tolerated(0.38) benign(0) TCGA-69-7980-01 4 1161317 1161317 C T SPON2 Silent p.G313G 0.08 TCGA-69-7980-01 4 123164214 123164214 C G KIAA1109 Nonsense_Mutation p.S1578* 0.05 TCGA-69-7980-01 4 126241663 126241663 G T FAT4 Missense_Mutation p.S1366I 0.36 probably_damaging(0.99) TCGA-69-7980-01 4 147824710 147824710 A G TTC29 Missense_Mutation p.L191P 0.26 deleterious(0.01) possibly_damaging(0.905) TCGA-69-7980-01 4 155720326 155720326 G T RBM46 Nonsense_Mutation p.E338* 0.12 TCGA-69-7980-01 4 159644357 159644357 T A PPID Silent p.R28R 0.77 TCGA-69-7980-01 4 162402214 162402214 G T FSTL5 Missense_Mutation p.D522E 0.30 deleterious(0.01) probably_damaging(0.97) TCGA-69-7980-01 4 169146827 169146827 C A DDX60 Missense_Mutation p.V1512L 0.67 deleterious(0.01) possibly_damaging(0.609) TCGA-69-7980-01 4 169146828 169146828 C T DDX60 Splice_Site p.X1512_splice 0.67 TCGA-69-7980-01 4 171010897 171010897 C A AADAT 5'UTR 0.23 TCGA-69-7980-01 4 174449985 174449985 C A HAND2 Missense_Mutation p.M152I 0.31 deleterious(0) possibly_damaging(0.755) TCGA-69-7980-01 4 177071727 177071727 C A WDR17 Missense_Mutation p.L787M 0.15 deleterious(0.01) probably_damaging(0.934) TCGA-69-7980-01 4 177190244 177190244 C T ASB5 Missense_Mutation p.E6K 0.11 deleterious(0) benign(0.37) TCGA-69-7980-01 4 183959301 183959301 C A FAM92A1P2 RNA 0.38 TCGA-69-7980-01 4 185018460 185018460 C A ENPP6 Missense_Mutation p.G352V 0.35 deleterious(0) probably_damaging(0.997) TCGA-69-7980-01 4 185941818 185941818 C T HELT Silent p.P292P 0.29 TCGA-69-7980-01 4 187078867 187078867 G T FAM149A Silent p.P241P 0.73 TCGA-69-7980-01 4 189063430 189063430 G A TRIML1 Missense_Mutation p.V177I 0.72 tolerated(0.44) benign(0.329) TCGA-69-7980-01 4 25005529 25005530 - T LGI2 Frame_Shift_Ins p.V395Gfs*9 0.26 TCGA-69-7980-01 4 26490882 26490882 C T CCKAR Missense_Mutation p.V113I 0.25 tolerated(0.46) benign(0.014) TCGA-69-7980-01 4 3447974 3447974 G A HGFAC Silent p.L436L 0.19 TCGA-69-7980-01 4 3447975 3447975 G T HGFAC Missense_Mutation p.V437F 0.17 deleterious(0) probably_damaging(0.928) TCGA-69-7980-01 4 38016288 38016288 G T TBC1D1 Silent p.L192L 0.36 TCGA-69-7980-01 4 40434703 40434711 CAGCGGCTG - RBM47 In_Frame_Del p.A500_A502del 0.33 TCGA-69-7980-01 4 44624424 44624424 A T YIPF7 3'UTR 0.23 TCGA-69-7980-01 4 46060534 46060534 C T GABRG1 Missense_Mutation p.R244Q 0.27 tolerated(0.1) possibly_damaging(0.599) TCGA-69-7980-01 4 47628443 47628443 A G CORIN Missense_Mutation p.L765S 0.05 deleterious(0) possibly_damaging(0.469) TCGA-69-7980-01 4 48038107 48038107 A T NIPAL1 Missense_Mutation p.N384I 0.24 deleterious(0.04) benign(0.051) TCGA-69-7980-01 4 53730701 53730701 C G RASL11B Missense_Mutation p.Q86E 0.15 tolerated(0.09) possibly_damaging(0.841) TCGA-69-7980-01 4 55133802 55133802 G T PDGFRA Missense_Mutation p.V339L 0.32 tolerated(0.13) benign(0.026) TCGA-69-7980-01 4 55161442 55161442 G T PDGFRA 3'UTR 0.73 TCGA-69-7980-01 4 5620294 5620294 C - EVC2 Frame_Shift_Del p.A873Pfs*18 0.39 TCGA-69-7980-01 4 6610904 6610904 G A MAN2B2 Missense_Mutation p.G629S 0.17 tolerated(0.1) probably_damaging(0.938) TCGA-69-7980-01 4 66218759 66218759 C T EPHA5 Splice_Site p.X766_splice 0.70 TCGA-69-7980-01 4 69337249 69337249 C A TMPRSS11E Missense_Mutation p.T133N 0.25 tolerated(0.15) benign(0.015) TCGA-69-7980-01 4 7002883 7002883 G C TBC1D14 Missense_Mutation p.R392T 0.06 deleterious(0.04) benign(0.024) TCGA-69-7980-01 4 70720024 70720024 G T SULT1E1 Missense_Mutation p.Q94K 0.24 tolerated(0.43) benign(0.15) TCGA-69-7980-01 4 71063851 71063851 C T ODAM Nonsense_Mutation p.Q118* 0.11 TCGA-69-7980-01 4 73149349 73149349 C A ADAMTS3 Missense_Mutation p.G1041V 0.08 deleterious(0) probably_damaging(0.925) TCGA-69-7980-01 4 77357309 77357309 G A SHROOM3 Missense_Mutation p.G35E 0.11 deleterious(0) probably_damaging(1) TCGA-69-7980-01 4 78697511 78697513 GGA - CNOT6L In_Frame_Del p.P14del 0.09 TCGA-69-7980-01 4 78830457 78830457 A G MRPL1 Silent p.L236L 0.28 TCGA-69-7980-01 4 83748590 83748590 T C SEC31A Missense_Mutation p.M1075V 0.77 tolerated(0.29) benign(0) TCGA-69-7980-01 4 8417721 8417721 G A ACOX3 Silent p.T50T 0.41 TCGA-69-7980-01 4 88580622 88580622 G C DMP1 Missense_Mutation p.E59Q 0.08 deleterious(0.02) possibly_damaging(0.85) TCGA-69-7980-01 4 88902898 88902898 T C SPP1 Missense_Mutation p.V163A 0.15 deleterious(0.01) possibly_damaging(0.786) TCGA-69-7980-01 4 90856810 90856810 G T MMRN1 Missense_Mutation p.R660I 0.72 tolerated(0.06) possibly_damaging(0.553) TCGA-69-7980-01 5 112889304 112889304 C G YTHDC2 Missense_Mutation p.L629V 0.20 deleterious(0.03) probably_damaging(0.968) TCGA-69-7980-01 5 122720712 122720712 C A CEP120 Missense_Mutation p.G566C 0.12 deleterious(0.01) possibly_damaging(0.894) TCGA-69-7980-01 5 127469953 127469953 G T SLC12A2 Nonsense_Mutation p.E429* 0.30 TCGA-69-7980-01 5 127483319 127483319 G T SLC12A2 Missense_Mutation p.M593I 0.12 tolerated(0.13) benign(0.123) TCGA-69-7980-01 5 130834300 130834300 C A RAPGEF6 Missense_Mutation p.A419S 0.62 deleterious(0) benign(0.305) TCGA-69-7980-01 5 134077174 134077174 T C CAMLG Silent p.L198L 0.16 TCGA-69-7980-01 5 134364727 134364727 C T PITX1 Missense_Mutation p.M229I 0.67 tolerated(0.08) benign(0.074) TCGA-69-7980-01 5 137681183 137681183 C T FAM53C Missense_Mutation p.P269L 0.24 tolerated(1) probably_damaging(0.958) TCGA-69-7980-01 5 137727918 137727918 C A KDM3B Missense_Mutation p.P866H 0.36 tolerated(0.13) possibly_damaging(0.784) TCGA-69-7980-01 5 138269493 138269493 G A CTNNA1 Silent p.V812V 0.24 TCGA-69-7980-01 5 13901490 13901490 C A DNAH5 Missense_Mutation p.M641I 0.27 benign(0.063) TCGA-69-7980-01 5 140389313 140389313 G T PCDHA5 Missense_Mutation p.G868C 0.16 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-69-7980-01 5 140501695 140501695 G C PCDHB4 Missense_Mutation p.E39Q 0.18 deleterious_low_confidence(0.05) possibly_damaging(0.896) TCGA-69-7980-01 5 140729927 140729927 A T PCDHGB1 Missense_Mutation p.T34S 0.67 tolerated(1) benign(0.008) TCGA-69-7980-01 5 140744112 140744112 C T PCDHGA5 Missense_Mutation p.T72M 0.59 tolerated_low_confidence(0.06) benign(0.378) TCGA-69-7980-01 5 14769115 14769115 C T ANKH Silent p.G94G 0.15 TCGA-69-7980-01 5 14769157 14769157 C G ANKH Missense_Mutation p.K80N 0.17 tolerated(0.1) possibly_damaging(0.636) TCGA-69-7980-01 5 14769166 14769166 C G ANKH Silent p.V77V 0.15 TCGA-69-7980-01 5 14769270 14769270 C G ANKH Missense_Mutation p.E43Q 0.18 deleterious(0.02) possibly_damaging(0.596) TCGA-69-7980-01 5 150632804 150632804 C T GM2A Silent p.L9L 0.14 TCGA-69-7980-01 5 151049324 151049324 T C SPARC Missense_Mutation p.T118A 0.57 deleterious(0) probably_damaging(0.991) TCGA-69-7980-01 5 154346360 154346360 G T MRPL22 Missense_Mutation p.G175V 0.22 deleterious(0) probably_damaging(1) TCGA-69-7980-01 5 157073778 157073778 T C SOX30 Silent p.L418L 0.40 TCGA-69-7980-01 5 161116337 161116337 G T GABRA6 Missense_Mutation p.G175V 0.28 deleterious(0) probably_damaging(1) TCGA-69-7980-01 5 163505 163505 C T PLEKHG4B Silent p.V750V 0.46 TCGA-69-7980-01 5 172571589 172571589 A C BNIP1 Missense_Mutation p.Q14P 0.14 deleterious(0) probably_damaging(0.945) TCGA-69-7980-01 5 172659825 172659825 T A NKX2-5 Missense_Mutation p.Y241F 0.58 deleterious(0.04) possibly_damaging(0.899) TCGA-69-7980-01 5 176314064 176314064 C A HK3 Missense_Mutation p.G599V 0.18 deleterious(0.01) probably_damaging(0.989) TCGA-69-7980-01 5 176795724 176795724 C T RGS14 Missense_Mutation p.R286W 0.17 deleterious(0) possibly_damaging(0.88) TCGA-69-7980-01 5 178580494 178580494 C - ADAMTS2 Frame_Shift_Del p.A505Rfs*49 0.40 TCGA-69-7980-01 5 19544062 19544062 T A CDH18 Missense_Mutation p.N436Y 0.49 tolerated(0.05) benign(0.001) TCGA-69-7980-01 5 26885762 26885762 C G CDH9 Missense_Mutation p.A615P 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-69-7980-01 5 31495439 31495439 C A DROSHA Missense_Mutation p.R570I 0.66 deleterious(0.02) benign(0.039) TCGA-69-7980-01 5 33891862 33891862 G T ADAMTS12 Missense_Mutation p.P34T 0.59 tolerated(0.41) benign(0.003) TCGA-69-7980-01 5 3599344 3599344 G C IRX1 Silent p.S94S 0.55 TCGA-69-7980-01 5 72873801 72873801 A G UTP15 Missense_Mutation p.I339V 0.53 tolerated(1) benign(0) TCGA-69-7980-01 5 76926342 76926342 G T OTP Missense_Mutation p.A242E 0.62 tolerated(0.09) benign(0.09) TCGA-69-7980-01 5 79030362 79030362 G T CMYA5 Missense_Mutation p.R1925M 0.50 benign(0.001) TCGA-69-7980-01 5 79616016 79616016 C G SPZ1 5'UTR 0.19 TCGA-69-7980-01 5 79855544 79855544 C G ANKRD34B Missense_Mutation p.E99Q 0.15 deleterious(0.02) possibly_damaging(0.658) TCGA-69-7980-01 5 82833991 82833991 G C VCAN Missense_Mutation p.K1723N 0.23 tolerated(0.07) benign(0.287) TCGA-69-7980-01 5 850634 850634 G A ZDHHC11 Silent p.I28I 0.11 TCGA-69-7980-01 5 94731844 94731844 C A FAM81B Silent p.T86T 0.53 TCGA-69-7980-01 5 94849318 94849318 T A TTC37 Missense_Mutation p.D912V 0.58 deleterious(0) probably_damaging(0.917) TCGA-69-7980-01 6 101053536 101053536 G A ASCC3 Silent p.F1695F 0.17 TCGA-69-7980-01 6 10404842 10404842 G T TFAP2A Silent p.L221L 0.18 TCGA-69-7980-01 6 10529606 10529606 C T GCNT2 Silent p.S154S 0.08 TCGA-69-7980-01 6 108066223 108066223 G T SCML4 Missense_Mutation p.H204Q 0.14 deleterious(0.01) benign(0.115) TCGA-69-7980-01 6 114378531 114378531 G T HS3ST5 Missense_Mutation p.R311S 0.34 deleterious(0) probably_damaging(0.998) TCGA-69-7980-01 6 116747753 116747753 C T DSE Missense_Mutation p.P145S 0.42 deleterious(0.04) probably_damaging(0.998) TCGA-69-7980-01 6 117237179 117237179 G T RFX6 Silent p.T263T 0.14 TCGA-69-7980-01 6 12163672 12163672 C G HIVEP1 Missense_Mutation p.H2379D 0.18 deleterious(0) probably_damaging(0.917) TCGA-69-7980-01 6 123591004 123591004 G T TRDN Silent p.P576P 0.22 TCGA-69-7980-01 6 129468115 129468115 G T LAMA2 Silent p.S277S 0.15 TCGA-69-7980-01 6 129513894 129513894 G A LAMA2 Missense_Mutation p.D560N 0.47 tolerated(0.52) benign(0.001) TCGA-69-7980-01 6 129826417 129826417 A T LAMA2 Nonsense_Mutation p.K2874* 0.40 TCGA-69-7980-01 6 130166922 130166922 C T TMEM244 Missense_Mutation p.V37M 0.40 tolerated(0.28) benign(0.002) TCGA-69-7980-01 6 132939166 132939166 C - TAAR2 Frame_Shift_Del p.G60Afs*5 0.18 TCGA-69-7980-01 6 144782414 144782414 C - UTRN Frame_Shift_Del p.Q931Rfs*4 0.24 TCGA-69-7980-01 6 146266723 146266723 C A SHPRH Nonsense_Mutation p.G458* 0.44 TCGA-69-7980-01 6 146755359 146755360 GG A GRM1 Frame_Shift_Del p.A1005Pfs*26 0.32 TCGA-69-7980-01 6 151672917 151672917 G C AKAP12 Missense_Mutation p.E1131Q 0.24 tolerated(0.06) possibly_damaging(0.743) TCGA-69-7980-01 6 157522225 157522225 G C ARID1B Missense_Mutation p.M1499I 0.25 benign(0.208) TCGA-69-7980-01 6 158902115 158902115 G C TULP4 Missense_Mutation p.R427T 0.31 deleterious(0.01) probably_damaging(0.989) TCGA-69-7980-01 6 159654537 159654537 C A FNDC1 Missense_Mutation p.P998H 0.47 deleterious_low_confidence(0) unknown(0) TCGA-69-7980-01 6 161016500 161016500 G T LPA Missense_Mutation p.P1119T 0.43 deleterious(0.01) probably_damaging(0.993) TCGA-69-7980-01 6 26124824 26124824 G C HIST1H2AC Missense_Mutation p.E122Q 0.24 tolerated_low_confidence(0.08) benign(0.004) TCGA-69-7980-01 6 26502076 26502076 G A BTN1A1 Missense_Mutation p.G113D 0.21 tolerated(0.15) benign(0.009) TCGA-69-7980-01 6 26598252 26598252 G T ABT1 Missense_Mutation p.A118S 0.18 deleterious(0.01) probably_damaging(0.981) TCGA-69-7980-01 6 28967725 28967725 C G ZNF311 Intron 0.17 TCGA-69-7980-01 6 29408157 29408157 A G OR10C1 Missense_Mutation p.Y122C 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-69-7980-01 6 29691174 29691174 T C HLA-F 5'Flank 0.21 TCGA-69-7980-01 6 30071355 30071355 C T TRIM31 Silent p.L412L 0.13 TCGA-69-7980-01 6 31625865 31625865 G A APOM Silent p.%3D 0.12 TCGA-69-7980-01 6 348818 348818 C A DUSP22 Missense_Mutation p.A162E 0.07 tolerated(1) benign(0.002) TCGA-69-7980-01 6 35209366 35209366 C G SCUBE3 Silent p.L414L 0.08 TCGA-69-7980-01 6 36294441 36294441 C G C6orf222 Missense_Mutation p.K294N 0.10 deleterious(0) possibly_damaging(0.895) TCGA-69-7980-01 6 38705690 38705690 C T DNAH8 Missense_Mutation p.S136L 0.06 benign(0.063) TCGA-69-7980-01 6 43308097 43308097 T C ZNF318 Silent p.K1213K 0.16 TCGA-69-7980-01 6 44336233 44336233 C A SPATS1 Nonsense_Mutation p.S231* 0.07 TCGA-69-7980-01 6 44387252 44387252 T - CDC5L Frame_Shift_Del p.L387Cfs*9 0.40 TCGA-69-7980-01 6 46690628 46690628 T A PLA2G7 Translation_Start_Site p.M1? 0.61 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-69-7980-01 6 47682876 47682876 C A GPR115 Missense_Mutation p.T632K 0.27 deleterious(0.03) benign(0.185) TCGA-69-7980-01 6 49698888 49698888 C T CRISP3 Missense_Mutation p.D223N 0.38 tolerated(1) benign(0.008) TCGA-69-7980-01 6 49936541 49936541 C A DEFB113 Missense_Mutation p.R33I 0.12 deleterious_low_confidence(0.01) benign(0.267) TCGA-69-7980-01 6 51712598 51712598 G T PKHD1 Missense_Mutation p.S2694R 0.35 tolerated(0.2) benign(0.008) TCGA-69-7980-01 6 51889474 51889474 C A PKHD1 Missense_Mutation p.G1712W 0.30 deleterious(0) probably_damaging(0.999) TCGA-69-7980-01 6 54219322 54219322 G T TINAG Missense_Mutation p.V380F 0.21 deleterious(0) probably_damaging(0.945) TCGA-69-7980-01 6 55266671 55266671 C A GFRAL 3'UTR 0.27 TCGA-69-7980-01 6 56483848 56483848 C G DST Intron 0.15 TCGA-69-7980-01 6 6251148 6251148 G T F13A1 Missense_Mutation p.L196M 0.18 tolerated(0.39) benign(0.281) TCGA-69-7980-01 6 62995788 62995788 C A KHDRBS2 Silent p.V22V 0.44 TCGA-69-7980-01 6 69666619 69666619 C A BAI3 Silent p.T481T 0.35 TCGA-69-7980-01 6 69785913 69785913 G C BAI3 Missense_Mutation p.L821F 0.27 tolerated(0.11) possibly_damaging(0.906) TCGA-69-7980-01 6 70646688 70646688 G T COL19A1 Missense_Mutation p.Q253H 0.21 tolerated(0.06) unknown(0) TCGA-69-7980-01 6 70646689 70646689 G T COL19A1 Missense_Mutation p.D254Y 0.20 deleterious(0.01) unknown(0) TCGA-69-7980-01 6 70897948 70897948 C T COL19A1 Missense_Mutation p.P1009L 0.39 tolerated(0.46) benign(0.182) TCGA-69-7980-01 6 71234590 71234590 G C FAM135A Missense_Mutation p.L601F 0.12 tolerated(0.31) possibly_damaging(0.894) TCGA-69-7980-01 6 76124490 76124490 G A FILIP1 Nonsense_Mutation p.R67* 0.11 TCGA-69-7980-01 6 84563413 84563413 G T RIPPLY2 Splice_Site p.X32_splice 0.73 TCGA-69-7980-01 7 100075039 100075039 C G TSC22D4 Missense_Mutation p.R208P 0.53 tolerated(0.08) benign(0.001) TCGA-69-7980-01 7 100551536 100551536 C T MUC3A Missense_Mutation p.T96I 0.08 deleterious(0) possibly_damaging(0.865) TCGA-69-7980-01 7 100693917 100693917 G T MUC17 Splice_Site p.X4292_splice 0.48 TCGA-69-7980-01 7 103163886 103163886 C T RELN Missense_Mutation p.C2481Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-69-7980-01 7 107642018 107642018 G T LAMB1 Silent p.I66I 0.29 TCGA-69-7980-01 7 111846768 111846768 G T ZNF277 5'UTR 0.55 TCGA-69-7980-01 7 127255358 127255358 C T PAX4 Intron 0.38 TCGA-69-7980-01 7 128505563 128505563 A T ATP6V1F Silent p.P125P 0.59 TCGA-69-7980-01 7 129120676 129120676 C G STRIP2 Missense_Mutation p.I665M 0.18 deleterious(0) probably_damaging(0.997) TCGA-69-7980-01 7 131844347 131844347 G T PLXNA4 Silent p.V1515V 0.66 TCGA-69-7980-01 7 135322691 135322691 G T NUP205 Nonsense_Mutation p.G1717* 0.15 TCGA-69-7980-01 7 135376299 135376299 C G SLC13A4 Missense_Mutation p.D439H 0.19 deleterious(0.01) possibly_damaging(0.653) TCGA-69-7980-01 7 136699780 136699780 C A CHRM2 Silent p.T56T 0.61 TCGA-69-7980-01 7 136700015 136700015 C A CHRM2 Silent p.R135R 0.36 TCGA-69-7980-01 7 136700016 136700016 G A CHRM2 Missense_Mutation p.R135Q 0.37 deleterious(0) probably_damaging(1) TCGA-69-7980-01 7 136700405 136700405 G T CHRM2 Missense_Mutation p.A265S 0.49 tolerated(0.89) benign(0.102) TCGA-69-7980-01 7 137293787 137293787 A T DGKI Missense_Mutation p.F364L 0.39 deleterious(0) benign(0.039) TCGA-69-7980-01 7 142510430 142510430 C A TRBV30 Missense_Mutation p.R59M 0.27 deleterious(0.01) possibly_damaging(0.52) TCGA-69-7980-01 7 143701627 143701627 G T OR6B1 Missense_Mutation p.D180Y 0.24 deleterious(0) probably_damaging(1) TCGA-69-7980-01 7 150174177 150174177 C T GIMAP8 Intron 0.51 TCGA-69-7980-01 7 150840846 150840846 G T AGAP3 Missense_Mutation p.R851L 0.67 tolerated(0.3) benign(0.421) TCGA-69-7980-01 7 158455020 158455020 T C NCAPG2 Missense_Mutation p.M619V 0.12 tolerated(0.3) probably_damaging(0.93) TCGA-69-7980-01 7 20198817 20198817 T C MACC1 Silent p.T389T 0.14 TCGA-69-7980-01 7 20725427 20725427 G C ABCB5 Missense_Mutation p.D660H 0.37 tolerated(0.08) benign(0.337) TCGA-69-7980-01 7 21985487 21985487 C A CDCA7L 5'UTR 0.55 TCGA-69-7980-01 7 24846453 24846453 C G OSBPL3 Missense_Mutation p.D796H 0.16 deleterious(0.04) possibly_damaging(0.869) TCGA-69-7980-01 7 29234691 29234691 A T CPVL Splice_Site 0.22 TCGA-69-7980-01 7 37283961 37283962 - A ELMO1 Frame_Shift_Ins p.C150Lfs*15 0.16 TCGA-69-7980-01 7 37890266 37890266 A G NME8 Missense_Mutation p.R43G 0.15 deleterious(0) benign(0.004) TCGA-69-7980-01 7 37956065 37956065 C T SFRP4 Silent p.E25E 0.26 TCGA-69-7980-01 7 40039085 40039085 G - CDK13 Frame_Shift_Del p.D724Ifs*8 0.26 TCGA-69-7980-01 7 41729708 41729708 C A INHBA Missense_Mutation p.G274V 0.15 tolerated_low_confidence(0.06) benign(0.012) TCGA-69-7980-01 7 42005202 42005202 C T GLI3 Missense_Mutation p.D1157N 0.21 tolerated(0.69) benign(0.227) TCGA-69-7980-01 7 43508550 43508550 G T HECW1 Missense_Mutation p.C982F 0.49 deleterious(0) possibly_damaging(0.881) TCGA-69-7980-01 7 44281927 44281927 C T CAMK2B Missense_Mutation p.E237K 0.08 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-69-7980-01 7 44747304 44747304 C T OGDH Missense_Mutation p.R974W 0.11 tolerated(0.09) possibly_damaging(0.724) TCGA-69-7980-01 7 44801331 44801331 G A ZMIZ2 Missense_Mutation p.E475K 0.40 deleterious(0.02) probably_damaging(0.948) TCGA-69-7980-01 7 57529323 57529323 G T ZNF716 Missense_Mutation p.G386C 0.07 deleterious(0.01) possibly_damaging(0.892) TCGA-69-7980-01 7 6487448 6487448 C A DAGLB Missense_Mutation p.R9L 0.15 deleterious(0) probably_damaging(0.995) TCGA-69-7980-01 7 82584891 82584891 C A PCLO Missense_Mutation p.R1793M 0.52 unknown(0) TCGA-69-7980-01 7 82584893 82584893 C A PCLO Missense_Mutation p.Q1792H 0.50 unknown(0) TCGA-69-7980-01 7 83022004 83022004 C A SEMA3E Missense_Mutation p.A512S 0.65 tolerated(0.18) possibly_damaging(0.461) TCGA-69-7980-01 7 90042003 90042003 G A CLDN12 Missense_Mutation p.D5N 0.44 tolerated_low_confidence(0.11) benign(0.039) TCGA-69-7980-01 7 97862844 97862844 C A TECPR1 Missense_Mutation p.G521C 0.40 deleterious(0.02) possibly_damaging(0.823) TCGA-69-7980-01 8 10466103 10466103 T C RP1L1 Missense_Mutation p.I1835M 0.31 unknown(0) TCGA-69-7980-01 8 105001560 105001560 G T RIMS2 Silent p.G985G 0.26 TCGA-69-7980-01 8 10623297 10623297 C T PINX1 Missense_Mutation p.D201N 0.25 deleterious(0.04) benign(0.022) TCGA-69-7980-01 8 106811019 106811019 G T ZFPM2 Missense_Mutation p.L269F 0.26 deleterious(0) possibly_damaging(0.906) TCGA-69-7980-01 8 108306254 108306254 A T ANGPT1 Missense_Mutation p.N316K 0.31 deleterious(0) possibly_damaging(0.811) TCGA-69-7980-01 8 114031388 114031388 G C CSMD3 Missense_Mutation p.P313R 0.26 deleterious(0) probably_damaging(1) TCGA-69-7980-01 8 116616280 116616280 A C TRPS1 Missense_Mutation p.V639G 0.29 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-69-7980-01 8 124349935 124349935 C A ATAD2 Missense_Mutation p.R994I 0.24 deleterious(0) probably_damaging(0.996) TCGA-69-7980-01 8 13356917 13356917 C T DLC1 Missense_Mutation p.E222K 0.20 deleterious_low_confidence(0.04) benign(0.242) TCGA-69-7980-01 8 133734362 133734362 C T TMEM71 Splice_Site p.X207_splice 0.27 TCGA-69-7980-01 8 136554930 136554930 G C KHDRBS3 Missense_Mutation p.G81R 0.32 deleterious(0) probably_damaging(1) TCGA-69-7980-01 8 139144932 139144932 G C FAM135B Missense_Mutation p.N1375K 0.23 deleterious(0) possibly_damaging(0.709) TCGA-69-7980-01 8 141549469 141549469 C T AGO2 Missense_Mutation p.V707M 0.23 deleterious(0) probably_damaging(0.998) TCGA-69-7980-01 8 143763484 143763484 G T PSCA Silent p.P93P 0.33 TCGA-69-7980-01 8 144895510 144895510 C G SCRIB Missense_Mutation p.D180H 0.25 probably_damaging(1) TCGA-69-7980-01 8 19362965 19362965 C A CSGALNACT1 Missense_Mutation p.Q127H 0.31 deleterious(0.02) probably_damaging(1) TCGA-69-7980-01 8 22974613 22974613 G T TNFRSF10C 3'UTR 0.30 TCGA-69-7980-01 8 28378250 28378250 C G FZD3 Silent p.V95V 0.26 TCGA-69-7980-01 8 3045446 3045446 G T CSMD1 Silent p.S1855S 0.27 TCGA-69-7980-01 8 30703622 30703622 T C TEX15 Missense_Mutation p.E971G 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-69-7980-01 8 30705432 30705432 C T TEX15 Missense_Mutation p.G368R 0.22 deleterious(0.04) benign(0.173) TCGA-69-7980-01 8 42179970 42179970 G T IKBKB Missense_Mutation p.E648D 0.21 tolerated(0.37) probably_damaging(0.996) TCGA-69-7980-01 8 51705360 51705360 A G SNTG1 Missense_Mutation p.T509A 0.31 tolerated_low_confidence(0.86) unknown(0) TCGA-69-7980-01 8 67422362 67422362 G A C8orf46 Silent p.L104L 0.17 TCGA-69-7980-01 8 67791074 67791074 C G MCMDC2 Missense_Mutation p.A210G 0.32 tolerated(0.23) benign(0.021) TCGA-69-7980-01 8 70978496 70978496 C A PRDM14 Missense_Mutation p.G386V 0.31 deleterious(0.02) possibly_damaging(0.844) TCGA-69-7980-01 8 75927069 75927069 C T CRISPLD1 Missense_Mutation p.P217S 0.20 deleterious(0.01) probably_damaging(0.988) TCGA-69-7980-01 8 77619980 77619980 C A ZFHX4 Silent p.L930L 0.32 TCGA-69-7980-01 8 80976712 80976712 C A TPD52 Splice_Site p.X85_splice 0.25 TCGA-69-7980-01 8 85441665 85441665 G A RALYL Missense_Mutation p.D50N 0.29 deleterious(0) probably_damaging(0.942) TCGA-69-7980-01 8 88885761 88885761 C A DCAF4L2 Missense_Mutation p.V147L 0.31 tolerated(0.36) benign(0.004) TCGA-69-7980-01 8 92346636 92346636 A T SLC26A7 Missense_Mutation p.K252N 0.21 deleterious(0.01) possibly_damaging(0.474) TCGA-69-7980-01 8 95264412 95264412 C A GEM Missense_Mutation p.G150W 0.29 deleterious(0) probably_damaging(1) TCGA-69-7980-01 8 95690505 95690505 T C ESRP1 Missense_Mutation p.S576P 0.35 tolerated(0.41) benign(0.002) TCGA-69-7980-01 9 100692953 100692953 G A HEMGN Missense_Mutation p.L242F 0.54 tolerated(0.09) probably_damaging(0.986) TCGA-69-7980-01 9 104238469 104238469 C G TMEM246 Missense_Mutation p.M302I 0.56 deleterious(0.01) probably_damaging(0.969) TCGA-69-7980-01 9 116930095 116930095 G T COL27A1 Missense_Mutation p.G87V 0.65 unknown(0) TCGA-69-7980-01 9 117405509 117405509 G T C9orf91 Silent p.T315T 0.66 TCGA-69-7980-01 9 119203026 119203026 C G ASTN2 Missense_Mutation p.G1164A 0.08 deleterious(0.01) unknown(0) TCGA-69-7980-01 9 124979357 124979357 G T LHX6 Silent p.A224A 0.57 TCGA-69-7980-01 9 125681796 125681796 C T ZBTB26 Missense_Mutation p.E140K 0.24 tolerated(0.38) benign(0.01) TCGA-69-7980-01 9 134471693 134471693 T C RAPGEF1 Missense_Mutation p.D726G 0.18 tolerated(0.25) benign(0.087) TCGA-69-7980-01 9 135114648 135114648 C T NTNG2 Silent p.N404N 0.10 TCGA-69-7980-01 9 136521726 136521726 G T DBH Missense_Mutation p.A506S 0.09 tolerated(0.63) benign(0.062) TCGA-69-7980-01 9 138669354 138669354 C T KCNT1 Silent p.N840N 0.61 TCGA-69-7980-01 9 140772602 140772602 C A CACNA1B Missense_Mutation p.R73S 0.25 deleterious(0.03) benign(0.018) TCGA-69-7980-01 9 19577004 19577005 - T SLC24A2 Frame_Shift_Ins p.A383Gfs*16 0.18 TCGA-69-7980-01 9 32480281 32480281 G A DDX58 Silent p.F570F 0.10 TCGA-69-7980-01 9 32630650 32630650 G C TAF1L Missense_Mutation p.A1643G 0.75 tolerated(0.09) possibly_damaging(0.908) TCGA-69-7980-01 9 33465774 33465774 C G NOL6 Missense_Mutation p.R829T 0.09 tolerated(0.17) benign(0.284) TCGA-69-7980-01 9 36170694 36170694 C G CCIN Missense_Mutation p.R399G 0.72 tolerated(0.47) benign(0.138) TCGA-69-7980-01 9 37745949 37745949 C A FRMPD1 Missense_Mutation p.S1307Y 0.14 deleterious(0.04) possibly_damaging(0.907) TCGA-69-7980-01 9 4844632 4844632 A C RCL1 Missense_Mutation p.E273A 0.24 deleterious(0) probably_damaging(0.999) TCGA-69-7980-01 9 5029897 5029897 A G JAK2 Missense_Mutation p.Y114C 0.13 deleterious(0) possibly_damaging(0.599) TCGA-69-7980-01 9 6254487 6254487 A - IL33 Frame_Shift_Del p.M183Wfs*2 0.12 TCGA-69-7980-01 9 6888033 6888033 A G KDM4C Silent p.V251V 0.65 TCGA-69-7980-01 9 77354675 77354675 G C TRPM6 Missense_Mutation p.I1817M 0.12 deleterious(0.02) possibly_damaging(0.495) TCGA-69-7980-01 9 91661855 91661855 G T SHC3 Missense_Mutation p.H339Q 0.71 deleterious(0.01) benign(0.394) TCGA-69-7980-01 9 95477560 95477560 G - BICD2 Frame_Shift_Del p.P815Rfs*10 0.65 TCGA-69-7980-01 9 968083 968083 C A DMRT1 Missense_Mutation p.P356T 0.32 tolerated(0.1) benign(0.003) TCGA-69-7980-01 9 990658 990658 C G DMRT3 Missense_Mutation p.L358V 0.52 deleterious_low_confidence(0.03) benign(0.096) TCGA-69-7980-01 X 100667366 100667366 C G HNRNPH2 Missense_Mutation p.F130L 0.23 deleterious(0) probably_damaging(1) TCGA-69-7980-01 X 103494976 103494976 C G ESX1 Missense_Mutation p.G385A 0.38 deleterious_low_confidence(0) unknown(0) TCGA-69-7980-01 X 10423046 10423046 C G MID1 Missense_Mutation p.E507Q 0.35 deleterious(0.03) probably_damaging(0.995) TCGA-69-7980-01 X 10442753 10442753 G T MID1 Missense_Mutation p.P351T 0.20 deleterious(0) probably_damaging(0.973) TCGA-69-7980-01 X 107169377 107169377 A T MID2 Missense_Mutation p.N551Y 0.56 deleterious(0.01) probably_damaging(0.994) TCGA-69-7980-01 X 107328312 107328312 C A PSMD10 Silent p.L191L 0.05 TCGA-69-7980-01 X 107978597 107978597 C T IRS4 Silent p.E326E 0.18 TCGA-69-7980-01 X 117733145 117733145 A T DOCK11 Missense_Mutation p.Q839L 0.41 tolerated(0.18) benign(0.003) TCGA-69-7980-01 X 123556172 123556172 G T TENM1 Missense_Mutation p.A1474D 0.57 deleterious(0) benign(0.258) TCGA-69-7980-01 X 135428925 135428925 T C GPR112 Silent p.N1020N 0.06 TCGA-69-7980-01 X 135429137 135429137 C T GPR112 Missense_Mutation p.A1091V 0.53 tolerated(0.3) benign(0.021) TCGA-69-7980-01 X 136649620 136649620 A G ZIC3 Missense_Mutation p.D257G 0.15 deleterious(0.03) benign(0.116) TCGA-69-7980-01 X 138672050 138672050 C A MCF2 Missense_Mutation p.D848Y 0.41 deleterious(0) probably_damaging(1) TCGA-69-7980-01 X 140984910 140984910 C A MAGEC3 Missense_Mutation p.L456M 0.08 deleterious(0.02) probably_damaging(0.979) TCGA-69-7980-01 X 141291758 141291758 C A MAGEC2 Missense_Mutation p.G6C 0.06 deleterious_low_confidence(0.05) benign(0.37) TCGA-69-7980-01 X 14599452 14599452 G T GLRA2 Missense_Mutation p.A140S 0.47 deleterious(0.05) probably_damaging(0.974) TCGA-69-7980-01 X 148037617 148037617 G A AFF2 Missense_Mutation p.R681K 0.60 deleterious(0.01) probably_damaging(0.987) TCGA-69-7980-01 X 151935687 151935687 C A MAGEA3 Silent p.L160L 0.40 TCGA-69-7980-01 X 152159695 152159695 G A PNMA5 Missense_Mutation p.P150S 0.04 tolerated(0.13) benign(0.095) TCGA-69-7980-01 X 153692505 153692505 C T PLXNA3 Silent p.T559T 0.61 TCGA-69-7980-01 X 154736707 154736707 G T TMLHE Missense_Mutation p.Q283K 0.04 tolerated(0.12) benign(0.142) TCGA-69-7980-01 X 15599456 15599456 G A ACE2 Missense_Mutation p.L320F 0.22 deleterious(0) probably_damaging(0.999) TCGA-69-7980-01 X 1584597 1584597 G T P2RY8 Missense_Mutation p.N285K 0.41 deleterious(0) probably_damaging(0.99) TCGA-69-7980-01 X 23398254 23398254 G T PTCHD1 Missense_Mutation p.G300C 0.21 deleterious(0) probably_damaging(0.983) TCGA-69-7980-01 X 23704502 23704502 G T PRDX4 3'UTR 0.26 TCGA-69-7980-01 X 24735405 24735405 A T POLA1 Splice_Site p.X230_splice 0.19 TCGA-69-7980-01 X 29938085 29938085 G A IL1RAPL1 Missense_Mutation p.G311R 0.17 deleterious(0) probably_damaging(1) TCGA-69-7980-01 X 31196064 31196064 C A DMD Missense_Mutation p.W3416L 0.17 possibly_damaging(0.504) TCGA-69-7980-01 X 31496470 31496470 G T DMD Missense_Mutation p.A2897D 0.19 possibly_damaging(0.82) TCGA-69-7980-01 X 3238246 3238246 C A MXRA5 Missense_Mutation p.G1827V 0.21 tolerated(0.21) benign(0.017) TCGA-69-7980-01 X 32490297 32490297 C A DMD Missense_Mutation p.R978I 0.16 probably_damaging(0.988) TCGA-69-7980-01 X 32591661 32591661 G T DMD Missense_Mutation p.L600I 0.40 possibly_damaging(0.87) TCGA-69-7980-01 X 36117908 36117908 A C CHDC2 Missense_Mutation p.K255T 0.11 tolerated(0.09) benign(0.066) TCGA-69-7980-01 X 37028281 37028281 G T FAM47C Nonsense_Mutation p.E600* 0.41 TCGA-69-7980-01 X 37587552 37587552 G T XK Missense_Mutation p.W391L 0.51 tolerated(0.61) benign(0.001) TCGA-69-7980-01 X 37961679 37961679 C A SYTL5 Missense_Mutation p.L383I 0.08 tolerated(0.13) benign(0.184) TCGA-69-7980-01 X 37961680 37961680 T A SYTL5 Missense_Mutation p.L383Q 0.08 tolerated(0.08) benign(0.08) TCGA-69-7980-01 X 38262994 38262994 G T OTC Splice_Site p.X221_splice 0.22 TCGA-69-7980-01 X 43626797 43626797 G C MAOB Silent p.L493L 0.38 TCGA-69-7980-01 X 48678626 48678626 G T HDAC6 Missense_Mutation p.M767I 0.20 deleterious(0) possibly_damaging(0.876) TCGA-69-7980-01 X 49032082 49032082 G C PRICKLE3 Silent p.P596P 0.14 TCGA-69-7980-01 X 49127076 49127076 C A PPP1R3F Silent p.P248P 0.18 TCGA-69-7980-01 X 49454072 49454072 C T PAGE1 Missense_Mutation p.V123I 0.18 tolerated(0.09) benign(0.299) TCGA-69-7980-01 X 53617988 53617988 G T HUWE1 Missense_Mutation p.P1356H 0.18 probably_damaging(0.991) TCGA-69-7980-01 X 53672342 53672342 C G HUWE1 Missense_Mutation p.S142T 0.10 probably_damaging(0.999) TCGA-69-7980-01 X 55033271 55033271 G C APEX2 Missense_Mutation p.Q320H 0.12 tolerated(0.09) benign(0.009) TCGA-69-7980-01 X 55047622 55047622 A T ALAS2 Silent p.T167T 0.29 TCGA-69-7980-01 X 55185586 55185586 G T FAM104B Silent p.I32I 0.34 TCGA-69-7980-01 X 55784772 55784772 G C RRAGB Missense_Mutation p.R374P 0.15 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-69-7980-01 X 5827152 5827152 C A NLGN4X Missense_Mutation p.G252C 0.10 deleterious(0) probably_damaging(1) TCGA-69-7980-01 X 64722499 64722499 A T ZC3H12B Missense_Mutation p.S641C 0.19 deleterious(0) possibly_damaging(0.882) TCGA-69-7980-01 X 65418786 65418786 A T HEPH Missense_Mutation p.N648Y 0.19 deleterious(0) benign(0.396) TCGA-69-7980-01 X 68836455 68836455 C A EDA Silent p.P101P 0.33 TCGA-69-7980-01 X 69623835 69623835 C A KIF4A Missense_Mutation p.T914K 0.17 tolerated(0.34) benign(0.036) TCGA-69-7980-01 X 70147815 70147815 C G SLC7A3 Silent p.L292L 0.18 TCGA-69-7980-01 X 70347744 70347744 G A MED12 Missense_Mutation p.D995N 0.41 benign(0.008) TCGA-69-7980-01 X 70824337 70824337 G C ACRC Missense_Mutation p.A404P 0.45 unknown(0) TCGA-69-7980-01 X 71351063 71351063 C A RGAG4 Missense_Mutation p.D110Y 0.47 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-69-7980-01 X 71351064 71351064 C A RGAG4 Missense_Mutation p.Q109H 0.47 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-69-7980-01 X 73040752 73040752 T A XIST RNA 0.35 TCGA-69-7980-01 X 73046033 73046033 A T XIST RNA 0.11 TCGA-69-7980-01 X 99901370 99901370 A G SRPX2 Silent p.L17L 0.04 TCGA-69-8253-01 10 103190180 103190180 C T BTRC Missense_Mutation p.P43S 0.28 deleterious_low_confidence(0.03) benign(0.074) TCGA-69-8253-01 10 123846372 123846372 G C TACC2 Missense_Mutation p.D1453H 0.15 possibly_damaging(0.838) TCGA-69-8253-01 10 123846729 123846729 G C TACC2 Missense_Mutation p.E1572Q 0.14 possibly_damaging(0.567) TCGA-69-8253-01 10 123846926 123846926 G A TACC2 Silent p.Q1637Q 0.17 TCGA-69-8253-01 10 16989252 16989252 C A CUBN Missense_Mutation p.R1775L 0.16 deleterious(0.04) possibly_damaging(0.626) TCGA-69-8253-01 10 25887579 25887579 T A GPR158 Silent p.P1008P 0.23 TCGA-69-8253-01 11 108124619 108124619 G T ATM Missense_Mutation p.K659N 0.15 tolerated(0.31) benign(0.019) TCGA-69-8253-01 11 128680741 128680741 C T FLI1 Missense_Mutation p.S406F 0.18 deleterious(0.01) possibly_damaging(0.602) TCGA-69-8253-01 11 18101897 18101897 G A SAAL1 3'UTR 0.20 TCGA-69-8253-01 11 36597635 36597635 C G RAG1 Missense_Mutation p.F927L 0.27 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-69-8253-01 11 64066887 64066887 G T KCNK4 Missense_Mutation p.G291W 0.24 deleterious(0.03) possibly_damaging(0.818) TCGA-69-8253-01 11 66109630 66109630 C A BRMS1 Nonsense_Mutation p.E26* 0.36 TCGA-69-8253-01 11 67203268 67203268 C A PTPRCAP Missense_Mutation p.S186I 0.18 deleterious(0) possibly_damaging(0.883) TCGA-69-8253-01 11 74054019 74054019 C T PGM2L1 Silent p.V451V 0.32 TCGA-69-8253-01 11 75439183 75439183 C T MOGAT2 Missense_Mutation p.T215I 0.21 tolerated(0.2) benign(0.005) TCGA-69-8253-01 11 92087428 92087428 C T FAT3 Missense_Mutation p.S717L 0.14 probably_damaging(0.998) TCGA-69-8253-01 11 93471306 93471307 TT C TAF1D Frame_Shift_Del p.N143Afs*8 0.27 TCGA-69-8253-01 12 107155225 107155225 C A RFX4 Missense_Mutation p.A738D 0.45 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-69-8253-01 12 247661 247661 G T IQSEC3 Missense_Mutation p.G378W 0.60 deleterious(0) probably_damaging(0.999) TCGA-69-8253-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.38 deleterious(0) benign(0.361) TCGA-69-8253-01 12 50284472 50284472 G T FAIM2 Silent p.T173T 0.33 TCGA-69-8253-01 13 110437640 110437640 A C IRS2 Missense_Mutation p.F254C 0.16 deleterious(0) probably_damaging(0.998) TCGA-69-8253-01 13 33017677 33017677 G T N4BP2L2 Missense_Mutation p.H333N 0.32 tolerated(1) benign(0) TCGA-69-8253-01 13 37569564 37569564 C A ALG5 Missense_Mutation p.R79L 0.32 deleterious(0) probably_damaging(0.998) TCGA-69-8253-01 13 94938670 94938670 A G GPC6 Missense_Mutation p.I315M 0.29 deleterious(0) probably_damaging(0.983) TCGA-69-8253-01 14 21957492 21957492 A T TOX4 Missense_Mutation p.N247I 0.37 deleterious(0.02) probably_damaging(0.981) TCGA-69-8253-01 14 22409381 22409381 C A TRAV9-2 Missense_Mutation p.P5T 0.18 tolerated(0.2) probably_damaging(0.929) TCGA-69-8253-01 14 22471889 22471889 C A TRAV18 Silent p.A104A 0.38 TCGA-69-8253-01 14 95058603 95058603 G T SERPINA5 3'UTR 0.22 TCGA-69-8253-01 15 22472937 22472937 C A IGHV4OR15-8 Missense_Mutation p.V112L 0.07 tolerated(0.07) benign(0.029) TCGA-69-8253-01 15 23811370 23811370 G A MKRN3 Silent p.A147A 0.13 TCGA-69-8253-01 15 25444427 25444427 G T SNORD115-14 3'Flank 0.10 TCGA-69-8253-01 15 25444638 25444638 G A SNORD115-16 RNA 0.14 TCGA-69-8253-01 15 25444661 25444661 G C SNORD115-16 RNA 0.12 TCGA-69-8253-01 15 25446344 25446344 C A SNORD115-19 5'Flank 0.07 TCGA-69-8253-01 15 25446475 25446475 G C SNORD115-17 RNA 0.10 TCGA-69-8253-01 15 25446513 25446513 G A SNORD115-17 RNA 0.10 TCGA-69-8253-01 15 25446536 25446536 G T SNORD115-17 RNA 0.10 TCGA-69-8253-01 16 20448632 20448632 G T ACSM5 Missense_Mutation p.E493D 0.19 deleterious(0) possibly_damaging(0.728) TCGA-69-8253-01 16 51172740 51172740 G A SALL1 Silent p.P1131P 0.40 TCGA-69-8253-01 16 62055429 62055429 A T CDH8 5'UTR 0.22 TCGA-69-8253-01 16 89261326 89261326 C T CDH15 Silent p.I736I 0.59 TCGA-69-8253-01 17 10409224 10409224 G T MYH1 Silent p.V693V 0.18 TCGA-69-8253-01 17 29253928 29253928 C A ADAP2 Missense_Mutation p.N103K 0.19 tolerated(0.76) benign(0.026) TCGA-69-8253-01 17 29623319 29623321 AGA - OMG In_Frame_Del p.L10_C11delinsR 0.28 TCGA-69-8253-01 17 45673790 45673790 C T NPEPPS Nonsense_Mutation p.Q500* 0.23 TCGA-69-8253-01 17 48156482 48156482 G T ITGA3 Missense_Mutation p.V815F 0.36 tolerated(0.74) benign(0.007) TCGA-69-8253-01 17 48195543 48195543 C A SAMD14 Silent p.S64S 0.18 TCGA-69-8253-01 17 48252755 48252755 G T SGCA Missense_Mutation p.R374L 0.10 tolerated(0.23) benign(0.168) TCGA-69-8253-01 17 56565344 56565344 C A HSF5 Missense_Mutation p.G98W 0.21 deleterious(0.02) probably_damaging(0.942) TCGA-69-8253-01 17 72310375 72310375 G T DNAI2 3'UTR 0.35 TCGA-69-8253-01 17 76498902 76498902 G A DNAH17-AS1 3'UTR 0.33 TCGA-69-8253-01 17 76810548 76810548 G A USP36 Silent p.V370V 0.17 TCGA-69-8253-01 18 13826743 13826743 G T MC5R 3'UTR 0.18 TCGA-69-8253-01 18 43914240 43914240 G T RNF165 Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-69-8253-01 18 54349938 54349938 G T WDR7 Missense_Mutation p.R125L 0.34 tolerated(0.23) benign(0.082) TCGA-69-8253-01 18 66367658 66367658 C G TMX3 Missense_Mutation p.A126P 0.11 deleterious(0) probably_damaging(1) TCGA-69-8253-01 18 67727173 67727173 C T RTTN Missense_Mutation p.C1618Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-69-8253-01 19 10610589 10610589 C A KEAP1 Nonsense_Mutation p.E41* 0.33 TCGA-69-8253-01 19 12874065 12874065 G A HOOK2 3'UTR 0.35 TCGA-69-8253-01 19 15651522 15651522 G T CYP4F22 Silent p.L311L 0.13 TCGA-69-8253-01 19 1612273 1612273 C A TCF3 Intron 0.22 TCGA-69-8253-01 19 17660430 17660430 T A FAM129C Intron 0.29 TCGA-69-8253-01 19 31768677 31768677 C T TSHZ3 Silent p.P674P 0.29 TCGA-69-8253-01 19 36212423 36212423 C T KMT2B Missense_Mutation p.P725L 0.28 benign(0.004) TCGA-69-8253-01 19 43420399 43420399 G T PSG6 Missense_Mutation p.S102Y 0.25 tolerated(0.12) probably_damaging(0.962) TCGA-69-8253-01 19 46823700 46823700 C A HIF3A Missense_Mutation p.S342R 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-69-8253-01 19 51453126 51453126 G T KLK5 Missense_Mutation p.A107D 0.24 deleterious(0) probably_damaging(1) TCGA-69-8253-01 19 51831941 51831941 G C IGLON5 Missense_Mutation p.E313D 0.31 tolerated(0.2) benign(0.416) TCGA-69-8253-01 19 51986378 51986378 C T CEACAM18 Silent p.L322L 0.28 TCGA-69-8253-01 19 53959951 53959951 G T ZNF761 RNA 0.26 TCGA-69-8253-01 19 56544053 56544053 C T NLRP5 Nonsense_Mutation p.Q785* 0.29 TCGA-69-8253-01 19 58102240 58102240 G T ZIK1 Missense_Mutation p.G354V 0.15 tolerated(0.06) benign(0.084) TCGA-69-8253-01 19 6707215 6707215 G A C3 Missense_Mutation p.S706L 0.20 deleterious(0) possibly_damaging(0.906) TCGA-69-8253-01 19 9084908 9084908 T G MUC16 Missense_Mutation p.K2303Q 0.39 unknown(0) TCGA-69-8253-01 19 9087447 9087447 G A MUC16 Silent p.P1456P 0.37 TCGA-69-8253-01 1 104122020 104122020 A T AMY2B Silent p.T478T 0.28 TCGA-69-8253-01 1 151237694 151237694 T G PSMD4 Missense_Mutation p.I141S 0.10 deleterious(0) probably_damaging(0.948) TCGA-69-8253-01 1 155160867 155160867 A G MUC1 Silent p.D220D 0.21 TCGA-69-8253-01 1 157737171 157737171 C G FCRL2 Missense_Mutation p.D338H 0.34 deleterious(0) possibly_damaging(0.761) TCGA-69-8253-01 1 158607971 158607971 C T SPTA1 Missense_Mutation p.V1681I 0.15 tolerated(0.25) benign(0.016) TCGA-69-8253-01 1 158670396 158670396 G C OR6K2 Missense_Mutation p.A16G 0.23 tolerated(1) benign(0.001) TCGA-69-8253-01 1 160535532 160535532 G A CD84 Missense_Mutation p.P17L 0.21 tolerated(0.29) benign(0.004) TCGA-69-8253-01 1 16065764 16065764 C T SLC25A34 Missense_Mutation p.R260W 0.11 deleterious(0) possibly_damaging(0.713) TCGA-69-8253-01 1 161654762 161654762 G C RPL31P11 RNA 0.05 TCGA-69-8253-01 1 162725556 162725556 A T DDR2 Missense_Mutation p.Y223F 0.09 tolerated(0.11) benign(0.122) TCGA-69-8253-01 1 169701017 169701017 C G SELE Missense_Mutation p.C163S 0.31 deleterious(0) probably_damaging(1) TCGA-69-8253-01 1 169953739 169953739 T A KIFAP3 Silent p.V459V 0.36 TCGA-69-8253-01 1 181764118 181764118 C A CACNA1E Missense_Mutation p.S2049Y 0.19 deleterious(0.05) possibly_damaging(0.888) TCGA-69-8253-01 1 200843050 200843050 G C GPR25 Silent p.L295L 0.38 TCGA-69-8253-01 1 208062055 208062055 C A CD34 Missense_Mutation p.R315L 0.36 deleterious(0) benign(0.439) TCGA-69-8253-01 1 22924194 22924194 G C EPHA8 Silent p.G652G 0.14 TCGA-69-8253-01 1 247875713 247875713 C A OR6F1 Silent p.L115L 0.24 TCGA-69-8253-01 1 248112575 248112575 T A OR2L8 Missense_Mutation p.V139E 0.12 deleterious(0.01) benign(0.314) TCGA-69-8253-01 1 248569987 248569987 C A OR2T1 Missense_Mutation p.A231E 0.09 deleterious(0) possibly_damaging(0.904) TCGA-69-8253-01 1 248685893 248685893 G T OR2G6 Missense_Mutation p.D316Y 0.21 deleterious(0.01) benign(0.02) TCGA-69-8253-01 1 27949588 27949588 G A FGR Silent p.F98F 0.13 TCGA-69-8253-01 1 48771543 48771543 C T SPATA6 Missense_Mutation p.R401K 0.15 tolerated(0.68) probably_damaging(0.937) TCGA-69-8253-01 1 84791349 84791349 C A SAMD13 Missense_Mutation p.P42H 0.22 deleterious(0) probably_damaging(0.999) TCGA-69-8253-01 1 84864216 84864216 T A DNASE2B 5'UTR 0.33 TCGA-69-8253-01 1 84864217 84864217 G T DNASE2B 5'UTR 0.33 TCGA-69-8253-01 1 94054832 94054832 C A BCAR3 Missense_Mutation p.A211S 0.26 tolerated(0.28) probably_damaging(0.995) TCGA-69-8253-01 20 3027121 3027121 G T MRPS26 Silent p.L105L 0.48 TCGA-69-8253-01 20 42213496 42213496 G T SGK2 Missense_Mutation p.G375V 0.10 deleterious(0) probably_damaging(0.99) TCGA-69-8253-01 20 46281737 46281737 T A NCOA3 Missense_Mutation p.M1395K 0.15 deleterious(0) possibly_damaging(0.557) TCGA-69-8253-01 20 60738605 60738605 G A SS18L1 Missense_Mutation p.M216I 0.49 tolerated_low_confidence(0.06) possibly_damaging(0.468) TCGA-69-8253-01 20 8707991 8707991 G T PLCB1 Nonsense_Mutation p.E572* 0.37 TCGA-69-8253-01 21 38390563 38390563 G T RIPPLY3 3'UTR 0.25 TCGA-69-8253-01 22 16449008 16449008 C A OR11H1 Missense_Mutation p.C266F 0.23 tolerated(1) benign(0) TCGA-69-8253-01 22 21363080 21363080 C T AC002472.1 5'Flank 0.11 TCGA-69-8253-01 22 31284263 31284263 T C OSBP2 Missense_Mutation p.Y452H 0.12 deleterious(0.01) probably_damaging(0.961) TCGA-69-8253-01 22 46654230 46654230 G A PKDREJ Missense_Mutation p.R1664C 0.40 tolerated(0.05) possibly_damaging(0.586) TCGA-69-8253-01 2 116503718 116503718 T A DPP10 Silent p.T307T 0.33 TCGA-69-8253-01 2 149520328 149520328 T G EPC2 Missense_Mutation p.L302R 0.32 tolerated(0.16) benign(0.042) TCGA-69-8253-01 2 163128776 163128776 T A IFIH1 Missense_Mutation p.H859L 0.16 tolerated(0.14) benign(0.001) TCGA-69-8253-01 2 168106658 168106658 A T XIRP2 Missense_Mutation p.E2919V 0.10 probably_damaging(0.909) TCGA-69-8253-01 2 179544365 179544365 C T TTN Missense_Mutation p.V11209I 0.14 TCGA-69-8253-01 2 183608324 183608324 G T DNAJC10 Splice_Site p.X398_splice 0.33 TCGA-69-8253-01 2 185803677 185803677 C A ZNF804A Missense_Mutation p.P1185Q 0.35 deleterious(0) benign(0.424) TCGA-69-8253-01 2 242757607 242757607 G T NEU4 Missense_Mutation p.G243C 0.33 deleterious(0.04) probably_damaging(0.939) TCGA-69-8253-01 2 28828782 28828782 C G PLB1 Missense_Mutation p.H1008Q 0.17 tolerated(0.1) possibly_damaging(0.859) TCGA-69-8253-01 2 45169549 45169549 G T SIX3 Silent p.T102T 0.26 TCGA-69-8253-01 2 48808757 48808757 A T STON1-GTF2A1L Missense_Mutation p.R329W 0.21 deleterious(0) possibly_damaging(0.907) TCGA-69-8253-01 2 49210287 49210287 C A FSHR Silent p.G181G 0.26 TCGA-69-8253-01 2 58313497 58313497 C G VRK2 Missense_Mutation p.Q94E 0.12 tolerated(0.08) benign(0.016) TCGA-69-8253-01 2 79363955 79363955 C A REG1P RNA 0.19 TCGA-69-8253-01 2 79385543 79385543 C A REG3A Missense_Mutation p.S81I 0.38 deleterious(0) possibly_damaging(0.878) TCGA-69-8253-01 3 10302145 10302145 C G TATDN2 Missense_Mutation p.Q247E 0.20 tolerated(0.27) benign(0.005) TCGA-69-8253-01 3 126153081 126153081 C T CCDC37 Silent p.T495T 0.24 TCGA-69-8253-01 3 16268980 16268980 C A GALNT15 Missense_Mutation p.D631E 0.08 tolerated(0.98) possibly_damaging(0.453) TCGA-69-8253-01 3 170587948 170587948 C T RPL22L1 Silent p.P3P 0.14 TCGA-69-8253-01 3 27760113 27760113 G A EOMES Silent p.N448N 0.18 TCGA-69-8253-01 3 33135073 33135073 G T TMPPE Missense_Mutation p.N205K 0.08 deleterious(0.05) benign(0.147) TCGA-69-8253-01 3 36779990 36779990 C G DCLK3 Missense_Mutation p.C54S 0.15 tolerated(0.56) benign(0.003) TCGA-69-8253-01 3 423930 423930 G A CHL1 Missense_Mutation p.E649K 0.20 tolerated(0.9) benign(0.007) TCGA-69-8253-01 3 44683588 44683588 G A ZNF197 Silent p.K322K 0.06 TCGA-69-8253-01 3 45537832 45537832 A G LARS2 Missense_Mutation p.Y530C 0.16 deleterious(0) probably_damaging(0.998) TCGA-69-8253-01 3 51352506 51352506 A C DOCK3 Missense_Mutation p.I1117L 0.13 deleterious(0.04) possibly_damaging(0.868) TCGA-69-8253-01 3 52537879 52537879 G T STAB1 Missense_Mutation p.R328L 0.15 tolerated(0.29) benign(0.001) TCGA-69-8253-01 3 73434882 73434882 T A PDZRN3 Missense_Mutation p.M525L 0.25 tolerated(0.57) benign(0.006) TCGA-69-8253-01 3 97711773 97711773 G C GABRR3 3'Flank 0.13 TCGA-69-8253-01 4 104579485 104579485 C A TACR3 Missense_Mutation p.W208C 0.22 deleterious(0) probably_damaging(1) TCGA-69-8253-01 4 119951954 119951954 C T SYNPO2 Missense_Mutation p.S675L 0.39 deleterious(0) benign(0.272) TCGA-69-8253-01 4 120192459 120192459 G T USP53 Missense_Mutation p.D482Y 0.27 deleterious(0.04) possibly_damaging(0.526) TCGA-69-8253-01 4 120981346 120981346 C A MAD2L1 Missense_Mutation p.R182L 0.11 deleterious(0.03) possibly_damaging(0.505) TCGA-69-8253-01 4 30723215 30723215 C T PCDH7 Silent p.I57I 0.06 TCGA-69-8253-01 4 30723223 30723223 G T PCDH7 Missense_Mutation p.G60V 0.06 tolerated(0.19) benign(0.056) TCGA-69-8253-01 4 36093631 36093631 G C ARAP2 Missense_Mutation p.L1433V 0.27 tolerated(0.52) benign(0.001) TCGA-69-8253-01 4 39310474 39310474 T C RFC1 Missense_Mutation p.K556R 0.22 tolerated(0.18) benign(0.002) TCGA-69-8253-01 4 70505031 70505031 G T UGT2A2 Missense_Mutation p.P110T 0.12 tolerated(0.52) probably_damaging(0.959) TCGA-69-8253-01 5 121188254 121188254 A G FTMT Missense_Mutation p.N199S 0.13 tolerated(0.1) benign(0.004) TCGA-69-8253-01 5 121786497 121786497 C A SNCAIP Missense_Mutation p.S652Y 0.29 tolerated(1) possibly_damaging(0.498) TCGA-69-8253-01 5 137727661 137727661 G C KDM3B Silent p.P780P 0.25 TCGA-69-8253-01 5 140482366 140482366 G T PCDHB3 Silent p.V711V 0.24 TCGA-69-8253-01 5 140537837 140537837 A T PCDHB17 3'UTR 0.29 TCGA-69-8253-01 5 167674739 167674739 C T TENM2 Silent p.D2265D 0.15 TCGA-69-8253-01 5 23527619 23527619 G T PRDM9 Nonsense_Mutation p.E808* 0.26 TCGA-69-8253-01 5 24537619 24537619 A T CDH10 Silent p.I132I 0.27 TCGA-69-8253-01 5 53814691 53814691 G T SNX18 Silent p.T303T 0.24 TCGA-69-8253-01 5 7414881 7414881 C G ADCY2 Missense_Mutation p.Q136E 0.22 deleterious(0) probably_damaging(0.936) TCGA-69-8253-01 5 79030896 79030896 A T CMYA5 Missense_Mutation p.E2103V 0.30 benign(0.003) TCGA-69-8253-01 6 132874290 132874290 C A TAAR8 Missense_Mutation p.S153R 0.19 tolerated(0.09) possibly_damaging(0.703) TCGA-69-8253-01 6 158353251 158353251 T C SNX9 Missense_Mutation p.I438T 0.37 deleterious(0) benign(0.439) TCGA-69-8253-01 6 26428330 26428330 G T BTN2A3P RNA 0.30 TCGA-69-8253-01 6 30550878 30550878 A T ABCF1 Silent p.A276A 0.11 TCGA-69-8253-01 6 38854576 38854576 G C DNAH8 Missense_Mutation p.E2540Q 0.15 probably_damaging(1) TCGA-69-8253-01 6 51613098 51613098 T A PKHD1 Missense_Mutation p.I3106F 0.16 deleterious(0) possibly_damaging(0.905) TCGA-69-8253-01 6 56481836 56481836 G T DST Intron 0.22 TCGA-69-8253-01 6 70608847 70608847 A T COL19A1 Silent p.S33S 0.15 TCGA-69-8253-01 6 70646764 70646764 C G COL19A1 Missense_Mutation p.Q279E 0.21 tolerated(0.15) unknown(0) TCGA-69-8253-01 6 87725813 87725813 C T HTR1E Missense_Mutation p.T254I 0.21 tolerated(0.24) possibly_damaging(0.507) TCGA-69-8253-01 7 103417063 103417063 G T RELN Missense_Mutation p.T162K 0.29 deleterious(0) benign(0.239) TCGA-69-8253-01 7 146818172 146818172 C T CNTNAP2 Missense_Mutation p.R286W 0.17 deleterious(0) probably_damaging(0.978) TCGA-69-8253-01 7 149520530 149520530 C A SSPO RNA 0.21 TCGA-69-8253-01 7 156469227 156469227 T A RNF32 Missense_Mutation p.S323T 0.25 deleterious(0.04) possibly_damaging(0.574) TCGA-69-8253-01 7 156469341 156469341 G C RNF32 Missense_Mutation p.E361Q 0.18 tolerated(0.13) benign(0.031) TCGA-69-8253-01 7 31378085 31378085 G T NEUROD6 Missense_Mutation p.N266K 0.13 tolerated(0.18) probably_damaging(0.913) TCGA-69-8253-01 7 38424317 38424317 T G AMPH 3'UTR 0.35 TCGA-69-8253-01 7 551998 551998 C G PDGFA Missense_Mutation p.K85N 0.11 deleterious(0.01) possibly_damaging(0.901) TCGA-69-8253-01 7 7572380 7572380 T C COL28A1 Intron 0.36 TCGA-69-8253-01 8 10383152 10383152 T G PRSS55 Silent p.G19G 0.24 TCGA-69-8253-01 8 117950553 117950553 C A AARD Missense_Mutation p.A24E 0.06 deleterious(0.01) benign(0.046) TCGA-69-8253-01 8 128750945 128750945 C T MYC Missense_Mutation p.S161L 0.29 deleterious(0) possibly_damaging(0.888) TCGA-69-8253-01 8 134269068 134269068 G A NDRG1 Silent p.I163I 0.37 TCGA-69-8253-01 8 142221548 142221548 C A SLC45A4 Missense_Mutation p.R797I 0.18 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-69-8253-01 8 40011033 40011033 C T C8orf4 5'UTR 0.17 TCGA-69-8253-01 8 48840357 48840357 C A PRKDC Missense_Mutation p.V745F 0.32 benign(0.004) TCGA-69-8253-01 8 77616869 77616869 T A ZFHX4 Silent p.S182S 0.33 TCGA-69-8253-01 8 87423799 87423799 G T WWP1 Missense_Mutation p.D253Y 0.14 deleterious(0.03) benign(0.165) TCGA-69-8253-01 9 123253737 123253737 C G CDK5RAP2 Missense_Mutation p.E444Q 0.19 tolerated(0.09) benign(0.403) TCGA-69-8253-01 9 123716130 123716130 C T C5 Silent p.E1593E 0.13 TCGA-69-8253-01 9 136339163 136339163 G A SLC2A6 Silent p.S325S 0.21 TCGA-69-8253-01 9 79253199 79253199 A G PRUNE2 Missense_Mutation p.Y2912H 0.29 deleterious(0) probably_damaging(0.997) TCGA-69-8253-01 9 84530753 84530753 C T SPATA31D5P RNA 0.14 TCGA-69-8253-01 9 87635229 87635229 G T NTRK2 Nonsense_Mutation p.E761* 0.23 TCGA-69-8253-01 X 100880026 100880026 C T ARMCX3 Silent p.G19G 0.29 TCGA-69-8253-01 X 105277584 105277584 G T SERPINA7 Silent p.I385I 0.16 TCGA-69-8253-01 X 108902654 108902654 C A ACSL4 Missense_Mutation p.W636L 0.16 tolerated(0.15) benign(0.334) TCGA-69-8253-01 X 110035358 110035358 A T CHRDL1 Missense_Mutation p.F18I 0.13 tolerated(0.5) benign(0.002) TCGA-69-8253-01 X 115576089 115576094 AGTGGC - SLC6A14 In_Frame_Del p.V221_A222del 0.14 TCGA-69-8253-01 X 14748490 14748490 G T GLRA2 Silent p.R414R 0.19 TCGA-69-8253-01 X 15560198 15560198 C T BMX Silent p.C496C 0.19 TCGA-69-8253-01 X 18622843 18622843 G C CDKL5 Missense_Mutation p.S600T 0.22 deleterious_low_confidence(0) benign(0.153) TCGA-69-8253-01 X 23018536 23018536 C A DDX53 Nonsense_Mutation p.S121* 0.20 TCGA-69-8253-01 X 31227650 31227650 A G DMD Silent p.D3176D 0.18 TCGA-69-8253-01 X 54275771 54275771 C A WNK3 Missense_Mutation p.V1004L 0.16 tolerated_low_confidence(0.13) benign(0.003) TCGA-69-8253-01 X 64718894 64718894 G A ZC3H12B Missense_Mutation p.R255Q 0.09 deleterious(0) benign(0.204) TCGA-69-8253-01 X 71358509 71358509 G A NHSL2 Missense_Mutation p.G371R 0.20 tolerated(0.11) possibly_damaging(0.877) TCGA-69-8253-01 X 82763390 82763390 G T POU3F4 Missense_Mutation p.A20S 0.21 tolerated(1) benign(0.004) TCGA-69-8253-01 X 89177681 89177681 C A TGIF2LX Silent p.S199S 0.20 TCGA-69-8253-01 X 91132649 91132649 C T PCDH11X Silent p.F470F 0.15 TCGA-69-8253-01 X 9905467 9905467 G T SHROOM2 Missense_Mutation p.R1294L 0.24 tolerated(0.26) benign(0) TCGA-69-8254-01 10 31809318 31809318 A T ZEB1 Missense_Mutation p.D353V 0.23 deleterious(0) probably_damaging(0.986) TCGA-69-8254-01 10 88761450 88761450 G T RP11-96C23.14 RNA 0.16 TCGA-69-8254-01 10 98989585 98989585 T A ARHGAP19 Missense_Mutation p.N444I 0.16 tolerated(0.42) benign(0.009) TCGA-69-8254-01 11 118773437 118773437 C A BCL9L Missense_Mutation p.V339L 0.27 benign(0.417) TCGA-69-8254-01 11 120317782 120317782 T C ARHGEF12 Missense_Mutation p.I526T 0.19 deleterious(0) probably_damaging(0.993) TCGA-69-8254-01 11 121489489 121489489 G T SORL1 Missense_Mutation p.G1871C 0.12 deleterious(0) probably_damaging(0.992) TCGA-69-8254-01 11 18568599 18568599 T C UEVLD Splice_Site p.X239_splice 0.18 TCGA-69-8254-01 11 44626675 44626675 C T CD82 Silent p.L68L 0.18 TCGA-69-8254-01 11 611697 611697 G A PHRF1 Missense_Mutation p.V1623M 0.27 deleterious(0) probably_damaging(0.938) TCGA-69-8254-01 11 71293642 71293642 C A KRTAP5-11 Missense_Mutation p.G81V 0.21 tolerated_low_confidence(0.12) unknown(0) TCGA-69-8254-01 12 106715424 106715424 C G TCP11L2 Missense_Mutation p.P192R 0.20 deleterious(0) probably_damaging(0.998) TCGA-69-8254-01 12 106903376 106903376 A G POLR3B 3'UTR 0.11 TCGA-69-8254-01 12 108686360 108686360 A T CMKLR1 Missense_Mutation p.V127D 0.24 deleterious(0) probably_damaging(0.998) TCGA-69-8254-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.16 deleterious(0) benign(0.361) TCGA-69-8254-01 12 47472393 47472393 C T AMIGO2 Silent p.T131T 0.20 TCGA-69-8254-01 12 56552340 56552340 G A MYL6 Intron 0.23 TCGA-69-8254-01 12 6675948 6675948 T C NOP2 Silent p.R48R 0.24 TCGA-69-8254-01 12 75601607 75601607 T A KCNC2 Nonsense_Mutation p.K53* 0.29 TCGA-69-8254-01 14 105355939 105355939 G T CEP170B Intron 0.23 TCGA-69-8254-01 14 69256600 69256600 G A ZFP36L1 Missense_Mutation p.P223S 0.23 tolerated(0.06) probably_damaging(0.999) TCGA-69-8254-01 14 96864548 96864548 C T AK7 Missense_Mutation p.T81M 0.26 deleterious(0) probably_damaging(0.964) TCGA-69-8254-01 15 45410220 45410220 C A DUOXA1 Missense_Mutation p.A347S 0.29 tolerated_low_confidence(0.22) benign(0.048) TCGA-69-8254-01 15 75111615 75111615 T A LMAN1L Splice_Site p.X240_splice 0.19 TCGA-69-8254-01 15 75143767 75143767 G A SCAMP2 Silent p.F133F 0.16 TCGA-69-8254-01 15 85186921 85186921 G C WDR73 Missense_Mutation p.T306R 0.27 tolerated(0.55) possibly_damaging(0.812) TCGA-69-8254-01 15 89195490 89195490 G C ISG20 Missense_Mutation p.R126S 0.15 tolerated(0.52) benign(0.024) TCGA-69-8254-01 16 20480877 20480877 C G ACSM2A Missense_Mutation p.D144E 0.20 deleterious(0) probably_damaging(1) TCGA-69-8254-01 16 705095 705095 C T WDR90 Missense_Mutation p.H502Y 0.07 deleterious(0.01) benign(0.202) TCGA-69-8254-01 16 81232395 81232395 A G PKD1L2 Missense_Mutation p.I472T 0.12 deleterious(0) benign(0.167) TCGA-69-8254-01 16 9923320 9923320 T A GRIN2A Missense_Mutation p.E656V 0.23 deleterious(0) probably_damaging(1) TCGA-69-8254-01 17 3704527 3704527 C A ITGAE 5'UTR 0.16 TCGA-69-8254-01 19 17662618 17662618 G A FAM129C Intron 0.26 TCGA-69-8254-01 19 46056875 46056875 T A OPA3 Intron 0.30 TCGA-69-8254-01 19 47856518 47856519 GA - DHX34 Frame_Shift_Del p.K78Gfs*54 0.16 TCGA-69-8254-01 19 51563836 51563836 C - KLK13 Frame_Shift_Del p.T32Pfs*23 0.15 TCGA-69-8254-01 19 52220303 52220303 G T HAS1 Missense_Mutation p.S282R 0.29 deleterious(0) probably_damaging(0.996) TCGA-69-8254-01 19 53058613 53058613 C T ZNF808 Missense_Mutation p.A815V 0.22 deleterious(0.03) possibly_damaging(0.906) TCGA-69-8254-01 19 55285064 55285064 C T KIR2DL1 Missense_Mutation p.P117L 0.23 deleterious(0.04) possibly_damaging(0.858) TCGA-69-8254-01 19 56703286 56703286 G A ZSCAN5B Missense_Mutation p.P174L 0.20 tolerated(0.14) benign(0.005) TCGA-69-8254-01 19 57911095 57911095 C T ZNF548 Silent p.S492S 0.22 TCGA-69-8254-01 19 6380471 6380471 C T GTF2F1 Missense_Mutation p.V459M 0.12 deleterious(0) probably_damaging(0.952) TCGA-69-8254-01 19 8615202 8615202 C T MYO1F Missense_Mutation p.G315R 0.20 tolerated(0.47) benign(0.067) TCGA-69-8254-01 1 117491977 117491977 G A PTGFRN Silent p.A332A 0.18 TCGA-69-8254-01 1 145296463 145296463 G T NBPF10 Missense_Mutation p.A129S 0.23 probably_damaging(0.975) TCGA-69-8254-01 1 156670419 156670419 A G CRABP2 Missense_Mutation p.M94T 0.44 deleterious(0) benign(0.385) TCGA-69-8254-01 1 156876638 156876638 G A PEAR1 Missense_Mutation p.A204T 0.16 tolerated(0.11) probably_damaging(0.998) TCGA-69-8254-01 1 158548799 158548799 G T OR10X1 Missense_Mutation p.F297L 0.16 tolerated(1) benign(0.076) TCGA-69-8254-01 1 161206364 161206364 G T NR1I3 5'UTR 0.37 TCGA-69-8254-01 1 171168560 171168560 T C FMO2 Missense_Mutation p.I187T 0.33 deleterious(0) benign(0.403) TCGA-69-8254-01 1 17735597 17735597 G A RCC2 Nonsense_Mutation p.R520* 0.19 TCGA-69-8254-01 1 27949604 27949604 T G FGR Missense_Mutation p.E93A 0.22 tolerated(0.36) benign(0.003) TCGA-69-8254-01 1 36762337 36762338 AC - THRAP3 Frame_Shift_Del p.T757Rfs*5 0.18 TCGA-69-8254-01 1 38280891 38280891 C A MTF1 Missense_Mutation p.D727Y 0.23 deleterious_low_confidence(0.01) benign(0.177) TCGA-69-8254-01 1 44433011 44433011 A G IPO13 Missense_Mutation p.S880G 0.25 tolerated(0.33) benign(0.005) TCGA-69-8254-01 1 68903985 68903985 T C RPE65 Missense_Mutation p.Y338C 0.25 tolerated(0.17) probably_damaging(1) TCGA-69-8254-01 1 70505430 70505430 G A LRRC7 Nonsense_Mutation p.W1270* 0.12 TCGA-69-8254-01 1 75677213 75677213 T G SLC44A5 Missense_Mutation p.I663L 0.29 deleterious(0) possibly_damaging(0.718) TCGA-69-8254-01 20 44698855 44698855 A G NCOA5 Missense_Mutation p.M120T 0.38 tolerated(0.66) unknown(0) TCGA-69-8254-01 21 32185397 32185397 C T KRTAP8-1 Missense_Mutation p.G48S 0.18 tolerated_low_confidence(0.08) probably_damaging(0.983) TCGA-69-8254-01 21 40781904 40781904 C A LCA5L Splice_Site p.X428_splice 0.10 TCGA-69-8254-01 21 45217430 45217430 G A RRP1 Missense_Mutation p.E184K 0.22 deleterious(0) probably_damaging(0.993) TCGA-69-8254-01 21 46229022 46229022 C T SUMO3 Missense_Mutation p.M54I 0.15 tolerated(0.16) benign(0.014) TCGA-69-8254-01 22 29837446 29837446 A C RFPL1 Intron 0.16 TCGA-69-8254-01 22 31266432 31266432 C T OSBP2 Silent p.D290D 0.10 TCGA-69-8254-01 2 118588386 118588386 A C DDX18 3'UTR 0.27 TCGA-69-8254-01 2 132288372 132288372 C T CCDC74A Silent p.F172F 0.15 TCGA-69-8254-01 2 178969162 178969162 A C CYCTP RNA 0.23 TCGA-69-8254-01 2 204150408 204150408 A T CYP20A1 Missense_Mutation p.Q308H 0.21 tolerated(0.07) benign(0.012) TCGA-69-8254-01 2 39542450 39542450 C A MAP4K3 Splice_Site p.X333_splice 0.18 TCGA-69-8254-01 3 100455417 100455417 C T TFG Intron 0.24 TCGA-69-8254-01 3 195779045 195779045 T A TFRC Missense_Mutation p.H684L 0.12 deleterious(0) benign(0.237) TCGA-69-8254-01 3 33249307 33249307 C T SUSD5 Silent p.K134K 0.29 TCGA-69-8254-01 3 50369278 50369278 C A RASSF1 Missense_Mutation p.G162C 0.20 deleterious(0) probably_damaging(1) TCGA-69-8254-01 4 187158067 187158067 C T KLKB1 Missense_Mutation p.T154M 0.16 tolerated(0.05) probably_damaging(0.975) TCGA-69-8254-01 4 46976251 46976251 G A GABRA4 Missense_Mutation p.T240M 0.24 deleterious(0) probably_damaging(1) TCGA-69-8254-01 4 48546000 48546000 C A FRYL Nonsense_Mutation p.E1806* 0.20 TCGA-69-8254-01 4 77976512 77976512 T C CCNI Missense_Mutation p.T161A 0.21 tolerated(0.91) benign(0.002) TCGA-69-8254-01 4 91229944 91229944 G A CCSER1 Missense_Mutation p.R170H 0.17 deleterious(0.01) benign(0.036) TCGA-69-8254-01 5 112177698 112177700 TTT - APC In_Frame_Del p.L2136_S2137delinsP 0.14 TCGA-69-8254-01 5 118451893 118451893 G T DMXL1 Missense_Mutation p.W202L 0.16 tolerated(0.24) probably_damaging(0.998) TCGA-69-8254-01 5 149502656 149502656 G T PDGFRB Missense_Mutation p.P711H 0.19 tolerated(0.07) benign(0.005) TCGA-69-8254-01 5 168093531 168093531 C T SLIT3 Silent p.Q1500Q 0.29 TCGA-69-8254-01 5 169533054 169533054 C A FOXI1 Nonsense_Mutation p.Y31* 0.10 TCGA-69-8254-01 5 172752928 172752928 C A STC2 Silent p.R79R 0.20 TCGA-69-8254-01 5 95018282 95018282 C A SPATA9 Nonsense_Mutation p.E34* 0.18 TCGA-69-8254-01 6 149340286 149340286 G T UST Missense_Mutation p.E231D 0.32 tolerated(0.43) benign(0.028) TCGA-69-8254-01 6 29429827 29429827 G A OR2H1 Missense_Mutation p.G94E 0.26 deleterious(0) possibly_damaging(0.807) TCGA-69-8254-01 6 29429828 29429828 A C OR2H1 Silent p.G94G 0.28 TCGA-69-8254-01 6 30622613 30622613 C T DHX16 Missense_Mutation p.R956Q 0.14 deleterious(0.03) unknown(0) TCGA-69-8254-01 6 32917487 32917487 G A HLA-DMA Nonsense_Mutation p.Q185* 0.18 TCGA-69-8254-01 6 41774749 41774749 C T USP49 Intron 0.25 TCGA-69-8254-01 6 84233317 84233317 G C PRSS35 Missense_Mutation p.D53H 0.06 tolerated(0.12) possibly_damaging(0.546) TCGA-69-8254-01 7 100017350 100017350 T C ZCWPW1 Missense_Mutation p.K62R 0.14 tolerated(0.06) benign(0.051) TCGA-69-8254-01 7 150761737 150761737 G T SLC4A2 Silent p.P114P 0.21 TCGA-69-8254-01 8 113267555 113267555 T C CSMD3 Missense_Mutation p.I3322V 0.28 tolerated(1) benign(0.001) TCGA-69-8254-01 8 124250098 124250098 C A C8orf76 Missense_Mutation p.Q99H 0.10 deleterious(0) probably_damaging(0.961) TCGA-69-8254-01 8 139890122 139890122 C T COL22A1 Missense_Mutation p.V177M 0.30 unknown(0) TCGA-69-8254-01 8 54142056 54142056 C A OPRK1 Missense_Mutation p.C315F 0.19 deleterious(0.02) probably_damaging(1) TCGA-69-8254-01 X 47045191 47045191 T A RBM10 Splice_Site p.X810_splice 0.39 TCGA-69-8254-01 X 76939451 76939451 T C ATRX Missense_Mutation p.K433E 0.47 benign(0.022) TCGA-69-8254-01 Y 9195438 9195438 T A TSPY8 5'Flank 0.32 TCGA-69-8255-01 10 108367049 108367049 C T SORCS1 Missense_Mutation p.G1014R 0.31 deleterious(0.01) benign(0.16) TCGA-69-8255-01 10 118204014 118204014 G A PNLIPRP3 Missense_Mutation p.D149N 0.38 tolerated(0.73) benign(0.011) TCGA-69-8255-01 10 13222584 13222584 G C MCM10 Missense_Mutation p.V304L 0.21 tolerated(0.07) benign(0.003) TCGA-69-8255-01 10 17110756 17110756 G T CUBN Missense_Mutation p.S880Y 0.14 deleterious(0) probably_damaging(0.956) TCGA-69-8255-01 10 43622119 43622120 - C RET Frame_Shift_Ins p.L1048Pfs*11 0.20 TCGA-69-8255-01 10 73765520 73765520 G T CHST3 5'UTR 0.29 TCGA-69-8255-01 10 74767844 74767844 A G P4HA1 3'UTR 0.67 TCGA-69-8255-01 10 75230716 75230716 T A PPP3CB Silent p.P272P 0.17 TCGA-69-8255-01 10 8007166 8007166 G - TAF3 Frame_Shift_Del p.D565Tfs*38 0.10 TCGA-69-8255-01 10 91192764 91192764 G A SLC16A12 3'UTR 0.09 TCGA-69-8255-01 11 108129792 108129792 G - ATM Frame_Shift_Del p.C819Lfs*4 0.22 TCGA-69-8255-01 11 110333128 110333128 C G FDX1 Missense_Mutation p.T164S 0.10 deleterious(0.01) possibly_damaging(0.593) TCGA-69-8255-01 11 111385684 111385684 G C C11orf88 Missense_Mutation p.D59H 0.11 deleterious(0.01) possibly_damaging(0.525) TCGA-69-8255-01 11 119025619 119025619 C A ABCG4 Missense_Mutation p.P227H 0.15 deleterious(0) probably_damaging(1) TCGA-69-8255-01 11 1214884 1214884 G T MUC5AC Intron 0.14 TCGA-69-8255-01 11 12379902 12379902 A T MICALCL Missense_Mutation p.Q655L 0.28 deleterious(0) benign(0.279) TCGA-69-8255-01 11 124252801 124252801 C A OR8B2 Missense_Mutation p.A147S 0.12 deleterious_low_confidence(0.03) benign(0.068) TCGA-69-8255-01 11 126162538 126162538 C T TIRAP Silent p.G78G 0.38 TCGA-69-8255-01 11 14536012 14536012 C G PSMA1 Missense_Mutation p.D100H 0.17 tolerated(0.09) benign(0.014) TCGA-69-8255-01 11 20805281 20805281 G T NELL1 Silent p.L80L 0.18 TCGA-69-8255-01 11 26718751 26718751 G T SLC5A12 Missense_Mutation p.P334T 0.16 deleterious(0.01) probably_damaging(1) TCGA-69-8255-01 11 27389869 27389869 A G LGR4 Missense_Mutation p.Y801H 0.16 deleterious(0.01) possibly_damaging(0.798) TCGA-69-8255-01 11 27742980 27742980 G T RP11-587D21.4 Intron 0.28 TCGA-69-8255-01 11 32979468 32979468 C G QSER1 Nonsense_Mutation p.S1473* 0.15 TCGA-69-8255-01 11 4123249 4123249 G C RRM1 Missense_Mutation p.D16H 0.21 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-69-8255-01 11 48285604 48285604 A T OR4X1 Missense_Mutation p.L64F 0.08 deleterious(0.01) benign(0.157) TCGA-69-8255-01 11 55579824 55579824 T C OR5L1 Silent p.N294N 0.08 TCGA-69-8255-01 11 55653044 55653044 C A TRIM51 Missense_Mutation p.A47E 0.24 tolerated(0.69) benign(0.002) TCGA-69-8255-01 11 56230203 56230203 G A OR5M9 Silent p.R225R 0.37 TCGA-69-8255-01 11 57093848 57093848 G A SSRP1 3'UTR 0.12 TCGA-69-8255-01 11 60638562 60638562 C T ZP1 Missense_Mutation p.T320M 0.24 deleterious(0.01) possibly_damaging(0.459) TCGA-69-8255-01 11 65269353 65269354 - A MALAT1 RNA 0.18 TCGA-69-8255-01 11 67925018 67925018 T C SUV420H1 3'UTR 0.69 TCGA-69-8255-01 11 71276986 71276986 G A KRTAP5-10 Missense_Mutation p.G118E 0.32 unknown(0) TCGA-69-8255-01 11 72945733 72945733 C T P2RY2 Missense_Mutation p.R177C 0.14 deleterious(0.01) possibly_damaging(0.849) TCGA-69-8255-01 11 75115773 75115773 G C RPS3 Missense_Mutation p.G215A 0.21 deleterious(0.03) benign(0.046) TCGA-69-8255-01 11 76256990 76256990 T C C11orf30 Silent p.S1141S 0.19 TCGA-69-8255-01 11 95564352 95564352 C T CEP57 Nonsense_Mutation p.Q479* 0.26 TCGA-69-8255-01 12 100377982 100377982 G C ANKS1B Missense_Mutation p.R12G 0.31 deleterious(0) benign(0.089) TCGA-69-8255-01 12 106634022 106634022 C T CKAP4 Missense_Mutation p.V197I 0.19 tolerated(1) benign(0.007) TCGA-69-8255-01 12 120156091 120156091 G A CIT Missense_Mutation p.A1376V 0.34 tolerated(0.11) benign(0.445) TCGA-69-8255-01 12 120208652 120208652 G C CIT Missense_Mutation p.N715K 0.44 tolerated(0.55) benign(0.052) TCGA-69-8255-01 12 122281703 122281703 T G HPD Missense_Mutation p.L289F 0.08 deleterious(0) probably_damaging(0.981) TCGA-69-8255-01 12 124233282 124233282 A T ATP6V0A2 Missense_Mutation p.N629Y 0.38 deleterious(0) possibly_damaging(0.789) TCGA-69-8255-01 12 14706303 14706303 T C PLBD1 Silent p.T53T 0.14 TCGA-69-8255-01 12 19514594 19514594 G A PLEKHA5 Missense_Mutation p.D1188N 0.08 tolerated(0.06) benign(0.003) TCGA-69-8255-01 12 21624500 21624500 A G RECQL Missense_Mutation p.L510P 0.10 deleterious(0) probably_damaging(0.989) TCGA-69-8255-01 12 29604409 29604409 C A OVCH1 Missense_Mutation p.W875L 0.25 deleterious(0.01) possibly_damaging(0.872) TCGA-69-8255-01 12 2975678 2975678 G A FOXM1 Missense_Mutation p.R286C 0.33 deleterious(0.01) benign(0.336) TCGA-69-8255-01 12 41337796 41337796 G T CNTN1 Splice_Site p.X503_splice 0.26 TCGA-69-8255-01 12 48525151 48525151 A - PFKM Frame_Shift_Del p.E142Gfs*5 0.10 TCGA-69-8255-01 12 54333153 54333153 G A HOXC13 Missense_Mutation p.E155K 0.40 deleterious(0) possibly_damaging(0.738) TCGA-69-8255-01 12 54333154 54333154 A G HOXC13 Missense_Mutation p.E155G 0.38 deleterious(0) possibly_damaging(0.797) TCGA-69-8255-01 12 69218366 69218366 C A MDM2 Missense_Mutation p.P153H 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-69-8255-01 12 95603577 95603577 C T FGD6 Missense_Mutation p.V495I 0.08 tolerated(0.34) benign(0.02) TCGA-69-8255-01 13 23915239 23915239 T G SACS Missense_Mutation p.I926L 0.34 benign(0.004) TCGA-69-8255-01 13 36348799 36348799 C A DCLK1 Nonsense_Mutation p.E724* 0.57 TCGA-69-8255-01 13 43358238 43358238 G T FAM216B Missense_Mutation p.W12L 0.31 tolerated(0.67) benign(0.053) TCGA-69-8255-01 13 43358239 43358239 G T FAM216B Missense_Mutation p.W12C 0.32 tolerated(0.19) benign(0.004) TCGA-69-8255-01 13 64321082 64321082 C A AL445989.1 Missense_Mutation p.S50Y 0.33 unknown(0) TCGA-69-8255-01 14 105419091 105419091 C A AHNAK2 Silent p.V899V 0.33 TCGA-69-8255-01 14 19573142 19573142 A C POTEG Missense_Mutation p.K414Q 0.13 tolerated(0.11) benign(0.017) TCGA-69-8255-01 14 20249147 20249147 G T OR4M1 Silent p.L222L 0.23 TCGA-69-8255-01 14 20404219 20404219 T A OR4K1 Missense_Mutation p.Y132N 0.06 deleterious(0) probably_damaging(0.999) TCGA-69-8255-01 14 44974523 44974523 A - FSCB Frame_Shift_Del p.A557Lfs*13 0.22 TCGA-69-8255-01 15 100514550 100514550 C T ADAMTS17 3'UTR 0.14 TCGA-69-8255-01 15 20649574 20649574 C T HERC2P3 RNA 0.16 TCGA-69-8255-01 15 20649575 20649575 C T HERC2P3 RNA 0.16 TCGA-69-8255-01 15 23889169 23889169 C A MAGEL2 Missense_Mutation p.G638C 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.731) TCGA-69-8255-01 15 24922134 24922134 G A NPAP1 Missense_Mutation p.E374K 0.33 tolerated(0.39) benign(0.201) TCGA-69-8255-01 15 25438545 25438545 G T SNORD115-11 3'Flank 0.10 TCGA-69-8255-01 15 28326922 28326922 G T OCA2 Silent p.A33A 0.20 TCGA-69-8255-01 15 28412956 28412956 G T HERC2 Missense_Mutation p.D3477E 0.46 benign(0.001) TCGA-69-8255-01 15 28422230 28422230 G T HERC2 Missense_Mutation p.R3100S 0.26 probably_damaging(0.997) TCGA-69-8255-01 15 40861783 40861783 C T RPUSD2 Missense_Mutation p.P83S 0.64 tolerated_low_confidence(0.17) benign(0.004) TCGA-69-8255-01 15 41388441 41388441 T A INO80 Missense_Mutation p.Q23L 0.31 deleterious(0) probably_damaging(0.983) TCGA-69-8255-01 15 42503660 42503660 T C TMEM87A 3'UTR 0.38 TCGA-69-8255-01 15 43483789 43483789 G A CCNDBP1 Missense_Mutation p.R259Q 0.09 tolerated(0.32) benign(0.438) TCGA-69-8255-01 15 49293208 49293208 T C SECISBP2L Missense_Mutation p.Y705C 0.53 deleterious(0.01) probably_damaging(1) TCGA-69-8255-01 15 55967725 55967725 A G PRTG Missense_Mutation p.L513P 0.44 deleterious(0.02) probably_damaging(0.987) TCGA-69-8255-01 15 64673550 64673550 G A KIAA0101 Silent p.D7D 0.16 TCGA-69-8255-01 15 65739167 65739167 C T DPP8 3'UTR 0.12 TCGA-69-8255-01 15 67885300 67885300 A T MAP2K5 Silent p.L156L 0.53 TCGA-69-8255-01 15 84700088 84700088 G A ADAMTSL3 Missense_Mutation p.C1553Y 0.13 deleterious(0.01) probably_damaging(0.977) TCGA-69-8255-01 15 91524843 91524843 T G PRC1 Missense_Mutation p.E186D 0.16 tolerated(0.27) benign(0.075) TCGA-69-8255-01 16 1822357 1822357 A T MRPS34 Silent p.I174I 0.46 TCGA-69-8255-01 16 2293082 2293082 G A ECI1 Missense_Mutation p.A236V 0.24 deleterious(0.02) possibly_damaging(0.486) TCGA-69-8255-01 16 30779967 30779967 G A RNF40 Missense_Mutation p.M669I 0.36 deleterious(0.04) possibly_damaging(0.688) TCGA-69-8255-01 16 46715296 46715296 G C VPS35 Missense_Mutation p.P106A 0.19 deleterious(0) probably_damaging(0.999) TCGA-69-8255-01 16 49433204 49433204 C A C16orf78 3'UTR 0.22 TCGA-69-8255-01 16 49525060 49525060 G A ZNF423 3'UTR 0.10 TCGA-69-8255-01 16 50059601 50059601 G A CNEP1R1 Missense_Mutation p.G22D 0.19 tolerated(0.63) benign(0.23) TCGA-69-8255-01 16 55362726 55362726 G T IRX6 Missense_Mutation p.G279V 0.21 tolerated(0.23) benign(0) TCGA-69-8255-01 16 57756727 57756727 G T CCDC135 Missense_Mutation p.R461L 0.25 deleterious(0) probably_damaging(0.917) TCGA-69-8255-01 16 66844652 66844652 T C NAE1 Missense_Mutation p.D353G 0.34 deleterious(0) probably_damaging(0.946) TCGA-69-8255-01 16 81198298 81198298 G T PKD1L2 RNA 0.43 TCGA-69-8255-01 16 89922095 89922095 G C SPIRE2 Splice_Site p.X326_splice 0.18 TCGA-69-8255-01 17 10436736 10436736 G C MYH2 Silent p.V769V 0.31 TCGA-69-8255-01 17 27944540 27944540 C T CORO6 Missense_Mutation p.R244Q 0.38 deleterious(0) probably_damaging(0.994) TCGA-69-8255-01 17 28886662 28886662 C T TBC1D29 5'UTR 0.16 TCGA-69-8255-01 17 34641644 34641644 C A CCL4L2 3'UTR 0.13 TCGA-69-8255-01 17 37369269 37369269 G A STAC2 Silent p.Y370Y 0.21 TCGA-69-8255-01 17 39305588 39305588 G A KRTAP4-5 Silent p.C144C 0.45 TCGA-69-8255-01 17 40004200 40004200 G A KLHL10 Missense_Mutation p.G490R 0.30 deleterious(0) probably_damaging(0.993) TCGA-69-8255-01 17 41020109 41020109 A T AOC4P RNA 0.17 TCGA-69-8255-01 17 41108286 41108286 T G AARSD1 Missense_Mutation p.N200H 0.17 tolerated(0.06) benign(0.039) TCGA-69-8255-01 17 41170193 41170193 C T VAT1 Missense_Mutation p.C209Y 0.12 deleterious(0) probably_damaging(0.995) TCGA-69-8255-01 17 56343649 56343649 C - LPO Frame_Shift_Del p.I553Sfs*29 0.20 TCGA-69-8255-01 17 56565354 56565354 C A HSF5 Silent p.L94L 0.46 TCGA-69-8255-01 17 57958311 57958311 G A TUBD1 Nonsense_Mutation p.Q161* 0.10 TCGA-69-8255-01 17 61278170 61278170 T A TANC2 Silent p.T133T 0.07 TCGA-69-8255-01 17 72249276 72249276 G T TTYH2 Missense_Mutation p.R439L 0.20 deleterious(0.01) possibly_damaging(0.885) TCGA-69-8255-01 17 74020167 74020167 G T EVPL Missense_Mutation p.R45S 0.08 deleterious(0.02) probably_damaging(0.995) TCGA-69-8255-01 17 74468789 74468789 G C RHBDF2 Missense_Mutation p.I710M 0.20 deleterious(0) possibly_damaging(0.595) TCGA-69-8255-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.41 TCGA-69-8255-01 18 14478348 14478348 G A CXADRP3 RNA 0.37 TCGA-69-8255-01 18 21452988 21452988 A T LAMA3 Intron 0.20 TCGA-69-8255-01 18 33263452 33263452 A G GALNT1 Silent p.R193R 0.24 TCGA-69-8255-01 18 5292182 5292182 C T ZBTB14 Missense_Mutation p.E9K 0.17 tolerated(0.1) benign(0.01) TCGA-69-8255-01 18 63529901 63529901 G C CDH7 Splice_Site p.X538_splice 0.25 TCGA-69-8255-01 19 11145655 11145655 G T SMARCA4 Missense_Mutation p.E1339D 0.36 probably_damaging(0.992) TCGA-69-8255-01 19 11145656 11145656 G T SMARCA4 Nonsense_Mutation p.E1340* 0.36 TCGA-69-8255-01 19 1390975 1390975 G A NDUFS7 Missense_Mutation p.A112T 0.12 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-69-8255-01 19 17305638 17305638 G T MYO9B Silent p.A1134A 0.19 TCGA-69-8255-01 19 18278016 18278016 C T PIK3R2 Silent p.L546L 0.30 TCGA-69-8255-01 19 31769416 31769416 G A TSHZ3 Missense_Mutation p.T428M 0.07 deleterious(0) benign(0.323) TCGA-69-8255-01 19 33353473 33353473 G A SLC7A9 Silent p.N166N 0.24 TCGA-69-8255-01 19 36278403 36278403 T G ARHGAP33 Missense_Mutation p.L818R 0.11 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-69-8255-01 19 3765209 3765209 C G MRPL54 Missense_Mutation p.A55G 0.33 tolerated(0.31) benign(0.007) TCGA-69-8255-01 19 4423818 4423818 A G CHAF1A Missense_Mutation p.K442E 0.15 deleterious(0.03) unknown(0) TCGA-69-8255-01 19 4911002 4911002 G C UHRF1 RNA 0.27 TCGA-69-8255-01 19 52403484 52403484 C T ZNF649 5'UTR 0.32 TCGA-69-8255-01 19 9801308 9801308 G T ZNF812 Missense_Mutation p.H291N 0.35 tolerated(0.63) benign(0.005) TCGA-69-8255-01 1 107867120 107867120 G T NTNG1 Missense_Mutation p.G155W 0.18 deleterious(0) probably_damaging(1) TCGA-69-8255-01 1 117624462 117624462 G C TTF2 Missense_Mutation p.G599A 0.16 deleterious(0) probably_damaging(0.999) TCGA-69-8255-01 1 11900341 11900341 G A CLCN6 3'UTR 0.10 TCGA-69-8255-01 1 149784999 149785000 - A HIST2H3D Frame_Shift_Ins p.K80* 0.21 TCGA-69-8255-01 1 152085432 152085432 A G TCHH Silent p.Y87Y 0.25 TCGA-69-8255-01 1 152284691 152284691 T C FLG Missense_Mutation p.S891G 0.15 probably_damaging(0.983) TCGA-69-8255-01 1 158299876 158299876 C A CD1B Nonsense_Mutation p.G125* 0.25 TCGA-69-8255-01 1 158612621 158612622 - T SPTA1 Frame_Shift_Ins p.D1530Rfs*4 0.24 TCGA-69-8255-01 1 158619688 158619688 C A SPTA1 Missense_Mutation p.R1176L 0.14 tolerated(0.28) benign(0.394) TCGA-69-8255-01 1 158670439 158670439 C T OR6K2 Missense_Mutation p.E2K 0.22 tolerated(0.21) benign(0.015) TCGA-69-8255-01 1 159683224 159683224 G T CRP 3'UTR 0.24 TCGA-69-8255-01 1 163310197 163310197 C T NUF2 Missense_Mutation p.S217L 0.23 tolerated(0.06) benign(0.002) TCGA-69-8255-01 1 168510157 168510157 G T XCL2 3'UTR 0.11 TCGA-69-8255-01 1 175067617 175067617 G T TNN Nonsense_Mutation p.E669* 0.16 TCGA-69-8255-01 1 176563798 176563798 T A PAPPA2 Nonsense_Mutation p.L353* 0.23 TCGA-69-8255-01 1 176640115 176640115 G T PAPPA2 Missense_Mutation p.M667I 0.21 tolerated(0.05) benign(0.172) TCGA-69-8255-01 1 176740186 176740186 C A PAPPA2 Missense_Mutation p.P1529T 0.22 deleterious(0) probably_damaging(0.995) TCGA-69-8255-01 1 186274030 186274030 A G PRG4 Missense_Mutation p.R192G 0.34 possibly_damaging(0.713) TCGA-69-8255-01 1 201054080 201054080 G A CACNA1S Silent p.F410F 0.09 TCGA-69-8255-01 1 203802971 203802971 A G ZC3H11A Silent p.K288K 0.05 TCGA-69-8255-01 1 207753945 207753945 G T CR1 Missense_Mutation p.V1735F 0.28 deleterious(0.01) probably_damaging(0.947) TCGA-69-8255-01 1 216019291 216019291 G T USH2A Missense_Mutation p.P2977Q 0.21 possibly_damaging(0.469) TCGA-69-8255-01 1 216373289 216373289 G T USH2A Missense_Mutation p.S1164Y 0.23 benign(0.156) TCGA-69-8255-01 1 22030038 22030038 G A USP48 Silent p.T863T 0.14 TCGA-69-8255-01 1 22030039 22030039 G A USP48 Missense_Mutation p.T863I 0.13 deleterious(0.03) benign(0.374) TCGA-69-8255-01 1 224514102 224514102 C T NVL Missense_Mutation p.R41K 0.29 tolerated(0.44) benign(0.002) TCGA-69-8255-01 1 228509226 228509226 A G OBSCN Missense_Mutation p.Q5852R 0.19 possibly_damaging(0.804) TCGA-69-8255-01 1 22923849 22923849 C G EPHA8 Missense_Mutation p.L604V 0.33 tolerated(0.09) benign(0.005) TCGA-69-8255-01 1 234743085 234743085 C G IRF2BP2 Missense_Mutation p.C521S 0.20 deleterious(0) possibly_damaging(0.879) TCGA-69-8255-01 1 23743853 23743853 C G TCEA3 Missense_Mutation p.G90A 0.19 tolerated(0.47) benign(0.002) TCGA-69-8255-01 1 241767839 241767839 C G OPN3 Missense_Mutation p.R139P 0.12 deleterious(0) probably_damaging(0.999) TCGA-69-8255-01 1 246797885 246797885 C G CNST Missense_Mutation p.Q272E 0.38 tolerated(0.07) benign(0.329) TCGA-69-8255-01 1 248201531 248201531 C A OR2L2 5'UTR 0.30 TCGA-69-8255-01 1 248344073 248344073 C T OR2M2 Silent p.P262P 0.18 TCGA-69-8255-01 1 248616426 248616426 G T OR2T2 Nonsense_Mutation p.G110* 0.15 TCGA-69-8255-01 1 248651964 248651964 C A OR2T5 Silent p.S25S 0.09 TCGA-69-8255-01 1 27180281 27180281 G A ZDHHC18 Missense_Mutation p.E372K 0.37 tolerated(0.87) benign(0.079) TCGA-69-8255-01 1 27216410 27216410 C A GPN2 Missense_Mutation p.V60L 0.26 tolerated(0.1) benign(0.075) TCGA-69-8255-01 1 27272664 27272664 T G NUDC Missense_Mutation p.F330V 0.37 deleterious(0) probably_damaging(0.945) TCGA-69-8255-01 1 36932024 36932024 T A CSF3R Silent p.P842P 0.21 TCGA-69-8255-01 1 39785347 39785347 A G MACF1 Silent p.A1324A 0.29 TCGA-69-8255-01 1 41213267 41213267 A T NFYC Missense_Mutation p.E56V 0.25 deleterious(0) probably_damaging(0.998) TCGA-69-8255-01 1 43787122 43787122 G A TIE1 Silent p.Q1068Q 0.36 TCGA-69-8255-01 1 52275959 52275959 T C NRD1 Missense_Mutation p.I701V 0.33 tolerated(1) benign(0.001) TCGA-69-8255-01 1 52499068 52499068 C T KTI12 Silent p.A122A 0.12 TCGA-69-8255-01 1 53715194 53715194 T C LRP8 Missense_Mutation p.E904G 0.20 tolerated_low_confidence(0.14) benign(0.08) TCGA-69-8255-01 1 65129453 65129453 G A CACHD1 Missense_Mutation p.R625H 0.13 deleterious(0.02) possibly_damaging(0.893) TCGA-69-8255-01 1 67306171 67306171 G T WDR78 Missense_Mutation p.A492D 0.15 deleterious(0) possibly_damaging(0.846) TCGA-69-8255-01 1 68611687 68611687 G A WLS Silent p.F379F 0.12 TCGA-69-8255-01 1 71537830 71537830 C T ZRANB2 Missense_Mutation p.D163N 0.18 deleterious(0.03) possibly_damaging(0.811) TCGA-69-8255-01 1 91844699 91844699 T A HFM1 Missense_Mutation p.N360I 0.20 tolerated(0.1) benign(0.014) TCGA-69-8255-01 1 94526108 94526108 C A ABCA4 Silent p.L715L 0.25 TCGA-69-8255-01 20 16030516 16030516 A T MACROD2 Nonsense_Mutation p.K425* 0.14 TCGA-69-8255-01 20 18123431 18123431 G T CSRP2BP Nonsense_Mutation p.E43* 0.09 TCGA-69-8255-01 20 24995868 24995868 T C ACSS1 Splice_Site p.X416_splice 0.24 TCGA-69-8255-01 20 33337975 33337975 G A NCOA6 Nonsense_Mutation p.Q675* 0.20 TCGA-69-8255-01 20 42602036 42602036 G T TOX2 Missense_Mutation p.M43I 0.21 tolerated(0.22) benign(0.001) TCGA-69-8255-01 20 6021601 6021601 G A LRRN4 3'UTR 0.44 TCGA-69-8255-01 20 60573216 60573217 - G TAF4 Frame_Shift_Ins p.L982Ffs*89 0.14 TCGA-69-8255-01 20 60754324 60754324 C T SS18L1 3'UTR 0.35 TCGA-69-8255-01 20 61513141 61513141 C T DIDO1 Silent p.E1389E 0.10 TCGA-69-8255-01 21 22881296 22881296 C T NCAM2 Silent p.C734C 0.14 TCGA-69-8255-01 21 38095364 38095364 C A SIM2 Nonsense_Mutation p.S159* 0.18 TCGA-69-8255-01 21 43319229 43319229 G T C2CD2 Silent p.P601P 0.22 TCGA-69-8255-01 21 44949704 44949704 C T HSF2BP Missense_Mutation p.R312H 0.22 tolerated(0.09) benign(0.361) TCGA-69-8255-01 21 46047273 46047273 G C KRTAP10-9 Missense_Mutation p.C62S 0.07 deleterious(0) unknown(0) TCGA-69-8255-01 21 47556364 47556364 G A FTCD 3'UTR 0.19 TCGA-69-8255-01 22 22041185 22041185 C T PPIL2 Silent p.A265A 0.20 TCGA-69-8255-01 22 23248712 23248712 G T IGLC3 Missense_Mutation p.A68S 0.11 benign(0.268) TCGA-69-8255-01 22 23653914 23653914 G T BCR Silent p.V1071V 0.27 TCGA-69-8255-01 22 26860261 26860261 G C HPS4 Missense_Mutation p.D445E 0.25 tolerated(0.23) possibly_damaging(0.487) TCGA-69-8255-01 22 34046371 34046371 C A LARGE Silent p.P130P 0.30 TCGA-69-8255-01 22 35743150 35743150 C T TOM1 Missense_Mutation p.A477V 0.41 tolerated(0.06) benign(0.016) TCGA-69-8255-01 22 37098437 37098437 C A CACNG2 Missense_Mutation p.G62V 0.17 deleterious(0) probably_damaging(0.948) TCGA-69-8255-01 22 50720417 50720417 C A PLXNB2 Missense_Mutation p.V1071L 0.29 tolerated(0.09) benign(0.071) TCGA-69-8255-01 2 103121898 103121898 C G SLC9A4 Missense_Mutation p.T389S 0.34 deleterious(0) probably_damaging(0.999) TCGA-69-8255-01 2 116447425 116447425 G T DPP10 Missense_Mutation p.W172C 0.24 tolerated(0.06) possibly_damaging(0.694) TCGA-69-8255-01 2 128383090 128383090 G A MYO7B Missense_Mutation p.V1373I 0.24 tolerated(0.97) benign(0.026) TCGA-69-8255-01 2 133542717 133542717 G A NCKAP5 Missense_Mutation p.T556M 0.15 tolerated(0.13) benign(0) TCGA-69-8255-01 2 149240745 149240745 C G MBD5 Missense_Mutation p.T862R 0.08 deleterious(0.05) possibly_damaging(0.702) TCGA-69-8255-01 2 166894599 166894599 A G SCN1A Missense_Mutation p.M878T 0.40 tolerated(0.63) benign(0.253) TCGA-69-8255-01 2 167273387 167273390 CAGC AGG SCN7A Frame_Shift_Del p.A1081Pfs*22 0.18 TCGA-69-8255-01 2 172398249 172398249 G C CYBRD1 Missense_Mutation p.M116I 0.30 deleterious(0) possibly_damaging(0.619) TCGA-69-8255-01 2 172749758 172749758 G C SLC25A12 Missense_Mutation p.T8S 0.29 deleterious(0.03) benign(0.056) TCGA-69-8255-01 2 173349966 173349966 G T ITGA6 Missense_Mutation p.D610Y 0.41 tolerated(0.4) benign(0) TCGA-69-8255-01 2 17697480 17697480 C A RAD51AP2 Missense_Mutation p.G735C 0.22 deleterious(0.02) benign(0.01) TCGA-69-8255-01 2 179300978 179300978 G C PRKRA Missense_Mutation p.I226M 0.20 tolerated(0.08) possibly_damaging(0.643) TCGA-69-8255-01 2 179397655 179397655 C A TTN Missense_Mutation p.V34563L 0.14 TCGA-69-8255-01 2 179583535 179583535 A C TTN Missense_Mutation p.F8131C 0.17 TCGA-69-8255-01 2 179590144 179590144 G T TTN Silent p.I6929I 0.24 TCGA-69-8255-01 2 201284118 201284118 G T SPATS2L Missense_Mutation p.S115I 0.17 tolerated(0.12) possibly_damaging(0.769) TCGA-69-8255-01 2 206614559 206614559 G A NRP2 Missense_Mutation p.E633K 0.29 tolerated(0.67) benign(0.08) TCGA-69-8255-01 2 211179842 211179842 G T MYL1 5'UTR 0.41 TCGA-69-8255-01 2 211179843 211179843 G T MYL1 5'UTR 0.41 TCGA-69-8255-01 2 211447391 211447391 G T CPS1 Silent p.V199V 0.14 TCGA-69-8255-01 2 215661801 215661801 C T BARD1 Missense_Mutation p.E67K 0.17 deleterious(0) possibly_damaging(0.867) TCGA-69-8255-01 2 219480430 219480430 G T PLCD4 Intron 0.21 TCGA-69-8255-01 2 233245150 233245150 C A ALPP Missense_Mutation p.N271K 0.08 deleterious(0.04) possibly_damaging(0.745) TCGA-69-8255-01 2 241631420 241631420 A G AQP12A Silent p.P30P 0.36 TCGA-69-8255-01 2 241631592 241631592 G C AQP12A Missense_Mutation p.L75F 0.40 tolerated(0.86) benign(0.004) TCGA-69-8255-01 2 242380815 242380815 C T FARP2 Silent p.L419L 0.23 TCGA-69-8255-01 2 28631702 28631702 G C FOSL2 Missense_Mutation p.R144P 0.30 deleterious(0) probably_damaging(0.999) TCGA-69-8255-01 2 37088314 37088314 T A STRN Missense_Mutation p.N544Y 0.34 deleterious(0) probably_damaging(0.997) TCGA-69-8255-01 2 39944151 39944151 G T TMEM178A Silent p.G218G 0.17 TCGA-69-8255-01 2 39944152 39944152 A T TMEM178A Missense_Mutation p.I219L 0.18 tolerated(0.09) benign(0.031) TCGA-69-8255-01 2 39964187 39964187 A G THUMPD2 Silent p.V400V 0.12 TCGA-69-8255-01 2 40656189 40656189 A G SLC8A1 Missense_Mutation p.F411S 0.22 deleterious(0) probably_damaging(1) TCGA-69-8255-01 2 44547539 44547539 C A SLC3A1 Missense_Mutation p.L607I 0.26 deleterious(0.04) possibly_damaging(0.899) TCGA-69-8255-01 2 47703628 47703628 G C MSH2 Missense_Mutation p.A710P 0.31 deleterious(0) probably_damaging(1) TCGA-69-8255-01 2 48958432 48958432 A C LHCGR Missense_Mutation p.L56R 0.12 deleterious(0) probably_damaging(0.942) TCGA-69-8255-01 2 51254796 51254796 C T NRXN1 Missense_Mutation p.D206N 0.73 tolerated(0.5) benign(0.248) TCGA-69-8255-01 2 60688714 60688714 C A BCL11A Missense_Mutation p.A445S 0.13 tolerated(0.2) possibly_damaging(0.515) TCGA-69-8255-01 2 60689420 60689420 C A BCL11A Silent p.P209P 0.23 TCGA-69-8255-01 2 65299528 65299528 T G CEP68 Missense_Mutation p.M433R 0.11 tolerated(0.37) benign(0.088) TCGA-69-8255-01 2 7030413 7030413 G C RSAD2 Missense_Mutation p.R282P 0.21 deleterious(0) probably_damaging(0.942) TCGA-69-8255-01 2 73479815 73479815 C A CCT7 Missense_Mutation p.D486E 0.24 deleterious(0.01) probably_damaging(0.95) TCGA-69-8255-01 2 77745960 77745960 G A LRRTM4 Silent p.I345I 0.19 TCGA-69-8255-01 2 9571001 9571001 C A CPSF3 Silent p.V111V 0.32 TCGA-69-8255-01 3 10132062 10132062 C G FANCD2 Missense_Mutation p.S1257W 0.18 deleterious(0) probably_damaging(0.933) TCGA-69-8255-01 3 102187859 102187859 G T ZPLD1 Silent p.R287R 0.23 TCGA-69-8255-01 3 108117996 108117996 G A MYH15 Missense_Mutation p.L1639F 0.16 deleterious(0.01) benign(0.134) TCGA-69-8255-01 3 108124288 108124288 G A MYH15 Missense_Mutation p.R1565C 0.09 deleterious(0.03) benign(0.115) TCGA-69-8255-01 3 113847756 113847757 GC A DRD3 Frame_Shift_Del p.A337Sfs*11 0.12 TCGA-69-8255-01 3 120489647 120489647 G A GTF2E1 Missense_Mutation p.R174H 0.20 deleterious(0) probably_damaging(0.986) TCGA-69-8255-01 3 121248602 121248602 G T POLQ Missense_Mutation p.T333K 0.21 deleterious(0) probably_damaging(0.923) TCGA-69-8255-01 3 129236352 129236352 C T IFT122 Silent p.I1153I 0.39 TCGA-69-8255-01 3 129281962 129281962 C A PLXND1 Missense_Mutation p.R1548L 0.29 deleterious(0) probably_damaging(0.998) TCGA-69-8255-01 3 15131993 15131993 C T ZFYVE20 Missense_Mutation p.D68N 0.15 tolerated(0.12) possibly_damaging(0.67) TCGA-69-8255-01 3 151474930 151474930 T G AADACL2 Missense_Mutation p.L252V 0.07 tolerated(0.12) possibly_damaging(0.513) TCGA-69-8255-01 3 158531791 158531791 A T MFSD1 Missense_Mutation p.Y245F 0.18 tolerated(0.09) benign(0.061) TCGA-69-8255-01 3 164786581 164786581 G T SI Missense_Mutation p.L138I 0.12 tolerated(0.08) benign(0.003) TCGA-69-8255-01 3 186839104 186839104 C A RPL39L 5'UTR 0.15 TCGA-69-8255-01 3 21478689 21478689 G C ZNF385D Missense_Mutation p.T149S 0.33 tolerated(0.76) benign(0.023) TCGA-69-8255-01 3 48209371 48209371 T C CDC25A Missense_Mutation p.N332D 0.14 tolerated(0.08) benign(0.002) TCGA-69-8255-01 3 53854579 53854579 G A CHDH Missense_Mutation p.R348C 0.25 deleterious(0) benign(0.302) TCGA-69-8255-01 3 62464059 62464059 C T CADPS Nonsense_Mutation p.W1069* 0.09 TCGA-69-8255-01 3 97634556 97634556 C G CRYBG3 Silent p.V791V 0.11 TCGA-69-8255-01 4 103517307 103517307 C T NFKB1 Missense_Mutation p.T438I 0.26 tolerated(0.14) benign(0.252) TCGA-69-8255-01 4 104029995 104029995 C A CENPE Missense_Mutation p.R2659L 0.31 possibly_damaging(0.508) TCGA-69-8255-01 4 123107277 123107277 C T KIAA1109 Nonsense_Mutation p.Q149* 0.32 TCGA-69-8255-01 4 144107144 144107144 G T USP38 Missense_Mutation p.V181L 0.42 tolerated(0.75) benign(0.002) TCGA-69-8255-01 4 144109082 144109082 A G USP38 Silent p.V262V 0.32 TCGA-69-8255-01 4 146813557 146813557 C G ZNF827 Missense_Mutation p.E368D 0.36 deleterious(0.01) probably_damaging(0.916) TCGA-69-8255-01 4 149356922 149356922 G A NR3C2 Missense_Mutation p.T364M 0.16 deleterious_low_confidence(0) possibly_damaging(0.521) TCGA-69-8255-01 4 159136419 159136419 A G TMEM144 Silent p.P62P 0.36 TCGA-69-8255-01 4 16193058 16193058 C T TAPT1 Missense_Mutation p.D180N 0.36 deleterious(0) probably_damaging(1) TCGA-69-8255-01 4 16504602 16504602 T C LDB2 Intron 0.11 TCGA-69-8255-01 4 187541954 187541954 A T FAT1 Missense_Mutation p.M1929K 0.20 benign(0.244) TCGA-69-8255-01 4 20620585 20620585 G A SLIT2 Missense_Mutation p.E1515K 0.14 deleterious(0.01) probably_damaging(0.988) TCGA-69-8255-01 4 24801466 24801466 G T SOD3 Missense_Mutation p.S108I 0.32 tolerated(0.2) benign(0.001) TCGA-69-8255-01 4 3184081 3184081 G C HTT Missense_Mutation p.V1584L 0.12 probably_damaging(0.995) TCGA-69-8255-01 4 39109275 39109275 C G KLHL5 Missense_Mutation p.Q584E 0.07 tolerated(0.43) benign(0.042) TCGA-69-8255-01 4 42965114 42965114 C - GRXCR1 Frame_Shift_Del p.L198Sfs*20 0.36 TCGA-69-8255-01 4 53492214 53492214 T G USP46 Missense_Mutation p.N178H 0.33 deleterious(0) benign(0.25) TCGA-69-8255-01 4 70080557 70080557 G C UGT2B11 5'Flank 0.10 TCGA-69-8255-01 4 77227934 77227934 C G FAM47E-STBD1 Silent p.V4V 0.56 TCGA-69-8255-01 4 81967524 81967524 G T BMP3 Nonsense_Mutation p.E317* 0.49 TCGA-69-8255-01 5 11385007 11385007 G A CTNND2 Missense_Mutation p.P316L 0.31 deleterious(0) benign(0.164) TCGA-69-8255-01 5 121786644 121786644 C T SNCAIP Missense_Mutation p.P701L 0.09 tolerated(0.09) probably_damaging(0.999) TCGA-69-8255-01 5 1245978 1245978 C A SLC6A18 Missense_Mutation p.R558S 0.34 tolerated(0.66) possibly_damaging(0.557) TCGA-69-8255-01 5 126738260 126738260 G T MEGF10 Missense_Mutation p.C268F 0.22 deleterious(0) probably_damaging(0.997) TCGA-69-8255-01 5 132085054 132085054 C G CCNI2 Nonsense_Mutation p.Y191* 0.13 TCGA-69-8255-01 5 137517298 137517298 G T KIF20A Missense_Mutation p.G86C 0.31 deleterious(0) probably_damaging(0.992) TCGA-69-8255-01 5 140166503 140166503 T C PCDHA1 Silent p.L210L 0.29 TCGA-69-8255-01 5 140222793 140222793 C A PCDHA8 Silent p.G629G 0.23 TCGA-69-8255-01 5 150028560 150028560 G A SYNPO Silent p.R485R 0.09 TCGA-69-8255-01 5 153709175 153709175 A G GALNT10 Missense_Mutation p.I149V 0.08 tolerated(1) benign(0.003) TCGA-69-8255-01 5 161578742 161578742 C T GABRG2 Missense_Mutation p.R419W 0.13 deleterious(0) benign(0.002) TCGA-69-8255-01 5 161580205 161580205 A G GABRG2 Missense_Mutation p.K460R 0.18 tolerated(0.26) possibly_damaging(0.535) TCGA-69-8255-01 5 176863129 176863129 C T GRK6 Silent p.L371L 0.16 TCGA-69-8255-01 5 37180961 37180961 C T C5orf42 Silent p.L1856L 0.28 TCGA-69-8255-01 5 40958222 40958222 G T C7 Missense_Mutation p.D450Y 0.24 deleterious(0.04) benign(0.15) TCGA-69-8255-01 5 43547901 43547901 C G PAIP1 Missense_Mutation p.A184P 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-69-8255-01 5 43649325 43649326 GG C NNT Frame_Shift_Del p.L507Ffs*13 0.15 TCGA-69-8255-01 5 45396782 45396782 C A HCN1 Missense_Mutation p.A348S 0.24 tolerated(0.09) benign(0.06) TCGA-69-8255-01 5 63256958 63256958 T G HTR1A Missense_Mutation p.I197L 0.12 deleterious(0.04) probably_damaging(0.934) TCGA-69-8255-01 6 101847197 101847197 G T GRIK2 Missense_Mutation p.R15L 0.26 tolerated(0.72) benign(0) TCGA-69-8255-01 6 102516358 102516358 G T GRIK2 Missense_Mutation p.R900M 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-69-8255-01 6 109814636 109814636 A G AK9 Missense_Mutation p.I1891T 0.13 tolerated(0.08) possibly_damaging(0.73) TCGA-69-8255-01 6 112450151 112450151 G T LAMA4 Silent p.S1420S 0.23 TCGA-69-8255-01 6 126075617 126075617 G C HEY2 Missense_Mutation p.A85P 0.10 deleterious(0) probably_damaging(0.986) TCGA-69-8255-01 6 127898326 127898326 G A C6orf58 5'UTR 0.26 TCGA-69-8255-01 6 142539888 142539888 G A VTA1 3'UTR 0.39 TCGA-69-8255-01 6 150111133 150111133 G T PCMT1 Missense_Mutation p.G137V 0.16 deleterious(0) probably_damaging(0.996) TCGA-69-8255-01 6 170034538 170034538 T G WDR27 Missense_Mutation p.N696T 0.23 deleterious(0.02) possibly_damaging(0.652) TCGA-69-8255-01 6 24486312 24486312 G T GPLD1 Missense_Mutation p.N48K 0.18 deleterious(0.04) benign(0.446) TCGA-69-8255-01 6 25776915 25776915 C A SLC17A4 Silent p.I360I 0.52 TCGA-69-8255-01 6 25776916 25776916 C A SLC17A4 Missense_Mutation p.L361I 0.52 deleterious(0.02) probably_damaging(0.942) TCGA-69-8255-01 6 26093018 26093018 A T HFE Missense_Mutation p.K241M 0.55 deleterious(0.05) probably_damaging(0.929) TCGA-69-8255-01 6 26217388 26217388 G C HIST1H2AE Missense_Mutation p.E62D 0.09 deleterious_low_confidence(0.02) benign(0.012) TCGA-69-8255-01 6 29323341 29323341 A C OR5V1 Missense_Mutation p.F211C 0.53 tolerated(0.23) probably_damaging(0.954) TCGA-69-8255-01 6 29643190 29643190 G A ZFP57 Missense_Mutation p.H109Y 0.13 tolerated(1) benign(0.097) TCGA-69-8255-01 6 30308286 30308286 G A TRIM39 Missense_Mutation p.E300K 0.49 deleterious(0.03) possibly_damaging(0.566) TCGA-69-8255-01 6 40400842 40400842 A G LRFN2 Missense_Mutation p.L4P 0.54 deleterious(0) possibly_damaging(0.766) TCGA-69-8255-01 6 41129046 41129046 T A TREM2 Missense_Mutation p.S116C 0.11 deleterious(0.01) possibly_damaging(0.866) TCGA-69-8255-01 6 44274899 44274899 C G AARS2 Intron 0.56 TCGA-69-8255-01 6 84310988 84310988 A G SNAP91 Splice_Site p.X442_splice 0.34 TCGA-69-8255-01 6 88240532 88240532 C A RARS2 Missense_Mutation p.L247F 0.15 tolerated(0.22) benign(0.232) TCGA-69-8255-01 6 97063574 97063574 G A FHL5 Missense_Mutation p.G261S 0.09 deleterious(0.02) probably_damaging(0.914) TCGA-69-8255-01 7 100243923 100243923 G A ACTL6B Silent p.T383T 0.32 TCGA-69-8255-01 7 100391819 100391819 C G ZAN Intron 0.19 TCGA-69-8255-01 7 100684526 100684526 A T MUC17 Missense_Mutation p.S3277C 0.21 possibly_damaging(0.898) TCGA-69-8255-01 7 142364555 142364555 T A TRBV24-1 Missense_Mutation p.L64M 0.37 deleterious(0) probably_damaging(0.998) TCGA-69-8255-01 7 149559182 149559182 G T ZNF862 Missense_Mutation p.C978F 0.58 tolerated(0.05) benign(0) TCGA-69-8255-01 7 157364132 157364132 C T PTPRN2 Missense_Mutation p.S946N 0.42 deleterious(0.03) benign(0.027) TCGA-69-8255-01 7 20766690 20766690 C T ABCB5 Missense_Mutation p.R885C 0.47 deleterious(0.01) probably_damaging(0.968) TCGA-69-8255-01 7 5662510 5662510 T C RNF216 Missense_Mutation p.Q918R 0.14 tolerated_low_confidence(0.05) probably_damaging(0.99) TCGA-69-8255-01 7 62752557 62752557 C A ZNF733P RNA 0.16 TCGA-69-8255-01 7 66304569 66304569 G T GTF2IRD1P1 RNA 0.31 TCGA-69-8255-01 7 66304570 66304570 G T GTF2IRD1P1 RNA 0.31 TCGA-69-8255-01 7 6737391 6737391 G A ZNF12 Nonsense_Mutation p.Q23* 0.34 TCGA-69-8255-01 7 6737392 6737392 C A ZNF12 Missense_Mutation p.W22C 0.34 deleterious(0) probably_damaging(0.999) TCGA-69-8255-01 7 90042648 90042649 - A CLDN12 Nonsense_Mutation p.Y220* 0.27 TCGA-69-8255-01 7 92083984 92083984 G T GATAD1 Missense_Mutation p.A202S 0.35 tolerated(0.36) benign(0.005) TCGA-69-8255-01 7 98609880 98609880 T - TRRAP Frame_Shift_Del p.F3828Sfs*8 0.24 TCGA-69-8255-01 8 101153657 101153657 A G FBXO43 Silent p.D275D 0.69 TCGA-69-8255-01 8 103339998 103339998 C A UBR5 Missense_Mutation p.A485S 0.51 tolerated(0.06) probably_damaging(0.924) TCGA-69-8255-01 8 113331135 113331135 C T CSMD3 Missense_Mutation p.G2431S 0.24 deleterious(0) possibly_damaging(0.792) TCGA-69-8255-01 8 13959956 13959956 C A SGCZ Missense_Mutation p.V225L 0.21 tolerated(0.19) benign(0.056) TCGA-69-8255-01 8 13959957 13959957 C A SGCZ Missense_Mutation p.Q224H 0.21 tolerated(1) benign(0.004) TCGA-69-8255-01 8 14095142 14095142 G C SGCZ Missense_Mutation p.A128G 0.20 deleterious(0) possibly_damaging(0.478) TCGA-69-8255-01 8 2033400 2033400 G A MYOM2 Missense_Mutation p.A508T 0.17 tolerated(0.18) benign(0.043) TCGA-69-8255-01 8 22058843 22058843 G T BMP1 Intron 0.18 TCGA-69-8255-01 8 48730024 48730024 T C PRKDC Missense_Mutation p.I3181V 0.11 benign(0.021) TCGA-69-8255-01 8 61765933 61765933 G T CHD7 Nonsense_Mutation p.E2217* 0.40 TCGA-69-8255-01 8 67578433 67578433 T A VCPIP1 Missense_Mutation p.Q254L 0.08 deleterious(0.01) benign(0.071) TCGA-69-8255-01 8 70744489 70744489 G T SLCO5A1 Silent p.I140I 0.11 TCGA-69-8255-01 8 7305555 7305555 G A SPAG11B 3'Flank 0.30 TCGA-69-8255-01 8 75274172 75274172 G T GDAP1 Missense_Mutation p.D180Y 0.29 deleterious(0) probably_damaging(0.964) TCGA-69-8255-01 8 77768361 77768361 G T ZFHX4 Missense_Mutation p.K3068N 0.27 probably_damaging(0.946) TCGA-69-8255-01 8 87060724 87060724 C - PSKH2 Frame_Shift_Del p.I376* 0.26 TCGA-69-8255-01 8 89053682 89053682 C A MMP16 3'UTR 0.07 TCGA-69-8255-01 9 113265498 113265498 C G SVEP1 Splice_Site p.X435_splice 0.14 TCGA-69-8255-01 9 139412282 139412282 C T NOTCH1 Missense_Mutation p.E455K 0.36 deleterious(0) probably_damaging(1) TCGA-69-8255-01 X 102333522 102333522 G T NXF3 Silent p.R473R 0.35 TCGA-69-8255-01 X 12904461 12904461 C T TLR7 Silent p.P278P 0.42 TCGA-69-8255-01 X 129492705 129492705 G C SLC25A14 Missense_Mutation p.W197S 0.15 deleterious(0) probably_damaging(0.998) TCGA-69-8255-01 X 152815031 152815031 C A ATP2B3 Missense_Mutation p.S472Y 0.33 deleterious(0) probably_damaging(0.918) TCGA-69-8255-01 X 16847891 16847891 G T TXLNG Nonsense_Mutation p.E288* 0.42 TCGA-69-8255-01 X 17095397 17095397 T C REPS2 Silent p.S461S 0.27 TCGA-69-8255-01 X 27766034 27766034 C A DCAF8L2 Missense_Mutation p.A341D 0.53 deleterious(0.05) possibly_damaging(0.618) TCGA-69-8255-01 X 29973906 29973906 G T IL1RAPL1 Missense_Mutation p.R687M 0.44 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-69-8255-01 X 34149521 34149521 T A FAM47A Missense_Mutation p.E292V 0.33 tolerated(0.17) possibly_damaging(0.607) TCGA-69-8255-01 X 34149522 34149522 C A FAM47A Nonsense_Mutation p.E292* 0.30 TCGA-69-8255-01 X 43626788 43626788 A T MAOB Silent p.I496I 0.84 TCGA-69-8255-01 X 67284002 67284002 T C OPHN1 Missense_Mutation p.T618A 0.47 tolerated(0.18) benign(0.001) TCGA-69-8255-01 X 70823923 70823923 G A ACRC Missense_Mutation p.D266N 0.33 unknown(0) TCGA-69-8255-01 X 70823953 70823953 G A ACRC Missense_Mutation p.D276N 0.10 unknown(0) TCGA-69-8255-01 X 83320109 83320109 G A RPS6KA6 Missense_Mutation p.S661F 0.59 deleterious(0.02) probably_damaging(0.93) TCGA-69-A59K-01 10 108339171 108339171 C A SORCS1 Silent p.V1109V 0.32 TCGA-69-A59K-01 10 115348899 115348899 C T HABP2 3'UTR 0.14 TCGA-69-A59K-01 10 12123617 12123617 C T DHTKD1 Missense_Mutation p.H101Y 0.29 deleterious(0.04) benign(0.012) TCGA-69-A59K-01 10 126716037 126716037 C A CTBP2 Missense_Mutation p.V98L 0.41 tolerated_low_confidence(0.13) benign(0.008) TCGA-69-A59K-01 10 21962689 21962689 G T MLLT10 Nonsense_Mutation p.E488* 0.15 TCGA-69-A59K-01 10 29773638 29773638 C T SVIL Silent p.E1634E 0.16 TCGA-69-A59K-01 10 43292463 43292463 G C BMS1 Missense_Mutation p.E591Q 0.11 deleterious(0.03) possibly_damaging(0.545) TCGA-69-A59K-01 10 44112233 44112233 G T ZNF485 Missense_Mutation p.G248W 0.28 deleterious(0) probably_damaging(0.998) TCGA-69-A59K-01 10 50532342 50532342 T G C10orf71 Silent p.S584S 0.18 TCGA-69-A59K-01 10 50532580 50532580 A G C10orf71 Missense_Mutation p.K664E 0.19 tolerated(0.3) benign(0.02) TCGA-69-A59K-01 10 58118365 58118365 C T ZWINT Silent p.E248E 0.25 TCGA-69-A59K-01 10 69957156 69957156 G T MYPN Missense_Mutation p.R1069L 0.24 deleterious(0.02) possibly_damaging(0.72) TCGA-69-A59K-01 10 72509717 72509717 C A ADAMTS14 Silent p.P804P 0.31 TCGA-69-A59K-01 10 85984330 85984330 G A LRIT2 Silent p.S217S 0.20 TCGA-69-A59K-01 10 88752033 88752033 C T RP11-96C23.5 RNA 0.23 TCGA-69-A59K-01 10 910208 910208 T A LARP4B Silent p.V48V 0.09 TCGA-69-A59K-01 11 100933436 100933436 C G PGR Missense_Mutation p.D652H 0.15 deleterious(0.02) probably_damaging(0.962) TCGA-69-A59K-01 11 101765795 101765795 C A ANGPTL5 Missense_Mutation p.G221V 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-69-A59K-01 11 111166916 111166916 C A COLCA1 Silent p.L96L 0.22 TCGA-69-A59K-01 11 123894340 123894340 G T OR10G9 Silent p.S207S 0.22 TCGA-69-A59K-01 11 126136508 126136508 C G SRPR Missense_Mutation p.D235H 0.13 tolerated(0.09) possibly_damaging(0.667) TCGA-69-A59K-01 11 30432940 30432940 G T MPPED2 3'UTR 0.44 TCGA-69-A59K-01 11 45204498 45204498 G T PRDM11 Missense_Mutation p.G104C 0.40 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 11 4936638 4936638 C G OR51G2 Missense_Mutation p.V86L 0.23 tolerated(0.16) benign(0.128) TCGA-69-A59K-01 11 55135399 55135399 C A OR4A15 Missense_Mutation p.P14T 0.12 benign(0) TCGA-69-A59K-01 11 55541788 55541788 A C OR5D13 Missense_Mutation p.Y292S 0.14 deleterious(0) probably_damaging(0.987) TCGA-69-A59K-01 11 55541832 55541832 G T OR5D13 Missense_Mutation p.V307F 0.30 tolerated(0.1) benign(0.005) TCGA-69-A59K-01 11 55653223 55653223 G C TRIM51 Missense_Mutation p.D107H 0.16 tolerated(0.09) probably_damaging(0.989) TCGA-69-A59K-01 11 56128118 56128118 C G OR8J1 Nonsense_Mutation p.Y132* 0.24 TCGA-69-A59K-01 11 56143220 56143220 G A OR8U1 Missense_Mutation p.G41S 0.11 deleterious(0.04) possibly_damaging(0.45) TCGA-69-A59K-01 11 56237295 56237295 G A OR5M3 Missense_Mutation p.R227C 0.14 tolerated(0.07) benign(0.047) TCGA-69-A59K-01 11 57003807 57003807 G C APLNR Missense_Mutation p.I224M 0.23 deleterious(0) probably_damaging(0.997) TCGA-69-A59K-01 11 57995829 57995829 G - OR10Q1 Frame_Shift_Del p.C173Wfs*35 0.16 TCGA-69-A59K-01 11 59623394 59623394 C A TCN1 Missense_Mutation p.M295I 0.26 tolerated(0.22) benign(0.044) TCGA-69-A59K-01 11 60692070 60692070 G T TMEM132A 5'UTR 0.29 TCGA-69-A59K-01 11 60692071 60692071 A G TMEM132A 5'UTR 0.29 TCGA-69-A59K-01 11 61036451 61036451 C A VWCE Missense_Mutation p.D609Y 0.15 deleterious(0) probably_damaging(0.935) TCGA-69-A59K-01 11 63072194 63072194 G A SLC22A10 Silent p.R477R 0.28 TCGA-69-A59K-01 11 65267721 65267721 G C MALAT1 RNA 0.26 TCGA-69-A59K-01 11 65358034 65358034 C T EHBP1L1 Silent p.L1418L 0.11 TCGA-69-A59K-01 11 66458923 66458923 C T SPTBN2 Silent p.A1799A 0.12 TCGA-69-A59K-01 11 67262386 67262386 C T PITPNM1 Silent p.E891E 0.12 TCGA-69-A59K-01 11 67799759 67799759 C T NDUFS8 Missense_Mutation p.P22L 0.28 tolerated_low_confidence(0.2) benign(0.002) TCGA-69-A59K-01 11 68179089 68179089 G T LRP5 Splice_Site p.X835_splice 0.24 TCGA-69-A59K-01 11 70333408 70333408 C T SHANK2 Missense_Mutation p.S998N 0.26 tolerated(0.52) benign(0.175) TCGA-69-A59K-01 11 74345685 74345685 C T POLD3 Missense_Mutation p.P355L 0.13 tolerated(0.16) benign(0.011) TCGA-69-A59K-01 11 76996227 76996227 C T GDPD4 5'UTR 0.23 TCGA-69-A59K-01 11 83984262 83984262 G T DLG2 Intron 0.21 TCGA-69-A59K-01 11 85415984 85415984 C A SYTL2 Missense_Mutation p.G1069W 0.26 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 11 86131086 86131086 C A CCDC81 Missense_Mutation p.A603D 0.25 tolerated(0.45) benign(0.042) TCGA-69-A59K-01 11 88583080 88583080 A G GRM5 Missense_Mutation p.L302P 0.21 deleterious(0.01) probably_damaging(0.942) TCGA-69-A59K-01 11 88781110 88781110 G A GRM5 5'UTR 0.18 TCGA-69-A59K-01 11 88911289 88911289 G C TYR Missense_Mutation p.Q56H 0.25 tolerated(0.08) probably_damaging(0.927) TCGA-69-A59K-01 11 88924446 88924446 G A TYR Missense_Mutation p.R299H 0.20 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 11 89405108 89405108 G C FOLH1B RNA 0.16 TCGA-69-A59K-01 11 89768532 89768532 G A TRIM49C Silent p.Q51Q 0.25 TCGA-69-A59K-01 11 92570836 92570836 G T FAT3 Missense_Mutation p.G3411V 0.23 possibly_damaging(0.597) TCGA-69-A59K-01 12 100441868 100441869 - T UHRF1BP1L Frame_Shift_Ins p.N1275Kfs*14 0.11 TCGA-69-A59K-01 12 110206856 110206856 G A FAM222A Silent p.P374P 0.28 TCGA-69-A59K-01 12 111066806 111066806 C T TCTN1 Intron 0.29 TCGA-69-A59K-01 12 11183898 11183898 C A TAS2R31 Missense_Mutation p.V13L 0.10 tolerated(0.39) possibly_damaging(0.472) TCGA-69-A59K-01 12 112159498 112159498 C T ACAD10 Missense_Mutation p.A370V 0.07 tolerated(0.19) probably_damaging(0.942) TCGA-69-A59K-01 12 113515278 113515278 G T DTX1 Silent p.P103P 0.23 TCGA-69-A59K-01 12 115120936 115120936 G T TBX3 Silent p.R24R 0.23 TCGA-69-A59K-01 12 125397454 125397454 G A UBC Silent p.N288N 0.03 TCGA-69-A59K-01 12 132396624 132396624 G T ULK1 Silent p.A362A 0.20 TCGA-69-A59K-01 12 19427917 19427917 G T PLEKHA5 Missense_Mutation p.G438V 0.28 deleterious(0.01) probably_damaging(1) TCGA-69-A59K-01 12 20832989 20832989 A T PDE3A Missense_Mutation p.K1070N 0.13 deleterious(0) possibly_damaging(0.824) TCGA-69-A59K-01 12 2721196 2721196 G T CACNA1C Intron 0.30 TCGA-69-A59K-01 12 29639242 29639242 C A OVCH1 Missense_Mutation p.R311M 0.29 tolerated(0.1) benign(0.055) TCGA-69-A59K-01 12 39734045 39734045 C A KIF21A Missense_Mutation p.R744S 0.24 deleterious(0) benign(0.26) TCGA-69-A59K-01 12 43896073 43896073 C A ADAMTS20 Missense_Mutation p.R250M 0.20 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 12 46582854 46582854 C A SLC38A1 Missense_Mutation p.A455S 0.24 deleterious(0) possibly_damaging(0.894) TCGA-69-A59K-01 12 52778902 52778902 G C KRT84 Silent p.P156P 0.14 TCGA-69-A59K-01 12 54799678 54799678 G T ITGA5 Silent p.S313S 0.19 TCGA-69-A59K-01 12 54805709 54805709 G T ITGA5 Missense_Mutation p.S86R 0.26 deleterious(0.05) possibly_damaging(0.811) TCGA-69-A59K-01 12 55615577 55615577 C A OR10A7 Missense_Mutation p.L257M 0.28 tolerated(0.34) benign(0.36) TCGA-69-A59K-01 12 57578153 57578153 G A LRP1 Missense_Mutation p.R2035Q 0.12 probably_damaging(0.936) TCGA-69-A59K-01 12 57994657 57994657 G T PIP4K2C Missense_Mutation p.G293C 0.27 deleterious(0) probably_damaging(0.964) TCGA-69-A59K-01 12 67675717 67675717 G T CAND1 Silent p.T32T 0.23 TCGA-69-A59K-01 12 7064388 7064388 G - PTPN6 Frame_Shift_Del p.I199Lfs*20 0.18 TCGA-69-A59K-01 12 70918365 70918365 A C PTPRB Missense_Mutation p.Y2171D 0.17 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 12 70948947 70948947 C A PTPRB Missense_Mutation p.E1712D 0.18 deleterious(0.02) probably_damaging(1) TCGA-69-A59K-01 12 70964914 70964914 C A PTPRB Missense_Mutation p.A1088S 0.23 tolerated(0.29) possibly_damaging(0.897) TCGA-69-A59K-01 12 86276089 86276089 G A NTS Missense_Mutation p.R150Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-69-A59K-01 12 8998750 8998751 - T A2ML1 Frame_Shift_Ins p.P541Sfs*8 0.17 TCGA-69-A59K-01 12 91347478 91347478 C A CCER1 Nonsense_Mutation p.E348* 0.20 TCGA-69-A59K-01 12 94243993 94243993 C T CRADD Silent p.N182N 0.15 TCGA-69-A59K-01 13 103309520 103309520 G T TPP2 Nonsense_Mutation p.E1023* 0.36 TCGA-69-A59K-01 13 20763172 20763172 G T GJB2 Silent p.S183S 0.36 TCGA-69-A59K-01 13 21396392 21396392 G T XPO4 Missense_Mutation p.Q293K 0.19 tolerated(0.07) benign(0.012) TCGA-69-A59K-01 13 28609802 28609802 T A FLT3 Missense_Mutation p.E476V 0.35 deleterious(0.01) possibly_damaging(0.864) TCGA-69-A59K-01 13 33741731 33741731 C A STARD13 Missense_Mutation p.W66C 0.23 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 13 38357161 38357161 T A TRPC4 Missense_Mutation p.I104F 0.38 deleterious(0) probably_damaging(0.929) TCGA-69-A59K-01 13 39550884 39550884 A T STOML3 Missense_Mutation p.S35T 0.42 deleterious(0.04) benign(0.334) TCGA-69-A59K-01 13 42761242 42761242 A T DGKH Missense_Mutation p.K532N 0.15 tolerated(0.05) benign(0.017) TCGA-69-A59K-01 13 60590276 60590276 C A DIAPH3 Missense_Mutation p.W210C 0.26 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 13 70514333 70514333 G T KLHL1 Missense_Mutation p.L285I 0.29 tolerated(0.06) possibly_damaging(0.717) TCGA-69-A59K-01 13 95112480 95112480 C A DCT Missense_Mutation p.R348S 0.29 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 13 95816710 95816710 C A ABCC4 Missense_Mutation p.Q699H 0.23 tolerated(0.14) benign(0.001) TCGA-69-A59K-01 14 101405914 101405914 G T SNORD113-6 RNA 0.17 TCGA-69-A59K-01 14 101498337 101498337 G C MIR543 RNA 0.25 TCGA-69-A59K-01 14 104639387 104639387 G T KIF26A Missense_Mutation p.W498C 0.42 deleterious(0) possibly_damaging(0.838) TCGA-69-A59K-01 14 106725449 106725449 C A IGHV3-23 Missense_Mutation p.G35W 0.24 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-69-A59K-01 14 106733336 106733336 C T IGHV1-24 Missense_Mutation p.M53I 0.07 tolerated(0.53) benign(0.005) TCGA-69-A59K-01 14 106780678 106780678 C A IGHV4-28 Silent p.G62G 0.24 TCGA-69-A59K-01 14 106780679 106780679 C A IGHV4-28 Missense_Mutation p.G62V 0.24 deleterious(0.01) possibly_damaging(0.902) TCGA-69-A59K-01 14 19553669 19553669 G A POTEG Missense_Mutation p.D85N 0.15 deleterious_low_confidence(0.01) benign(0.253) TCGA-69-A59K-01 14 20666143 20666143 T A OR11G2 Missense_Mutation p.C217S 0.32 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 14 21058502 21058502 C A RNASE12 Missense_Mutation p.E127D 0.30 deleterious(0.03) possibly_damaging(0.52) TCGA-69-A59K-01 14 24438136 24438136 C T DHRS4 3'UTR 0.17 TCGA-69-A59K-01 14 25102224 25102224 A T GZMB Missense_Mutation p.Y34N 0.12 deleterious(0) probably_damaging(0.999) TCGA-69-A59K-01 14 25102225 25102225 G T GZMB Silent p.P33P 0.12 TCGA-69-A59K-01 14 52496397 52496397 G T NID2 Missense_Mutation p.P757T 0.09 tolerated(0.07) benign(0.197) TCGA-69-A59K-01 14 65205488 65205488 C T PLEKHG3 Missense_Mutation p.S422F 0.38 tolerated(0.39) benign(0.252) TCGA-69-A59K-01 14 71063417 71063417 T G MED6 Missense_Mutation p.Q62P 0.15 deleterious(0.02) possibly_damaging(0.745) TCGA-69-A59K-01 14 75265425 75265425 G T YLPM1 Missense_Mutation p.R1142M 0.15 probably_damaging(0.992) TCGA-69-A59K-01 14 76948388 76948388 C T ESRRB Missense_Mutation p.R182C 0.13 deleterious(0) probably_damaging(0.997) TCGA-69-A59K-01 14 77242449 77242449 C A VASH1 Missense_Mutation p.R249S 0.12 tolerated(0.21) benign(0.3) TCGA-69-A59K-01 14 86087948 86087948 G T FLRT2 Silent p.V30V 0.27 TCGA-69-A59K-01 14 93717918 93717918 C A BTBD7 Silent p.T611T 0.27 TCGA-69-A59K-01 14 99642343 99642343 G T BCL11B Missense_Mutation p.S277Y 0.38 deleterious(0.01) probably_damaging(0.974) TCGA-69-A59K-01 15 26825467 26825467 T A GABRB3 Silent p.T227T 0.35 TCGA-69-A59K-01 15 31253166 31253166 C A MTMR10 Missense_Mutation p.D226Y 0.42 deleterious(0) probably_damaging(0.999) TCGA-69-A59K-01 15 34078083 34078083 G C RYR3 Missense_Mutation p.K3163N 0.33 benign(0.017) TCGA-69-A59K-01 15 42041399 42041399 A G MGA Missense_Mutation p.N1865S 0.12 tolerated(0.48) benign(0.002) TCGA-69-A59K-01 15 49083487 49083487 G A CEP152 Nonsense_Mutation p.Q307* 0.24 TCGA-69-A59K-01 15 54305107 54305107 G A UNC13C Missense_Mutation p.A3T 0.09 tolerated_low_confidence(0.05) benign(0.01) TCGA-69-A59K-01 15 55489107 55489107 C A RSL24D1 5'UTR 0.45 TCGA-69-A59K-01 15 56142789 56142789 G A NEDD4 Missense_Mutation p.P780L 0.35 deleterious(0.01) probably_damaging(0.977) TCGA-69-A59K-01 15 64966812 64966812 G T ZNF609 Missense_Mutation p.G587C 0.29 deleterious(0.02) benign(0.416) TCGA-69-A59K-01 15 75183751 75183751 C A MPI Missense_Mutation p.A59D 0.31 deleterious(0) possibly_damaging(0.853) TCGA-69-A59K-01 15 79324604 79324604 C A RASGRF1 Missense_Mutation p.R338L 0.28 deleterious(0) probably_damaging(0.999) TCGA-69-A59K-01 16 22149804 22149804 A T VWA3A Missense_Mutation p.R755W 0.50 deleterious(0) benign(0.325) TCGA-69-A59K-01 16 23457175 23457175 C A COG7 Missense_Mutation p.D93Y 0.48 deleterious(0) probably_damaging(0.971) TCGA-69-A59K-01 16 31473940 31473940 G A ARMC5 Missense_Mutation p.E358K 0.20 deleterious(0) possibly_damaging(0.742) TCGA-69-A59K-01 16 3458664 3458664 G C ZNF174 Missense_Mutation p.K323N 0.12 deleterious(0.03) possibly_damaging(0.658) TCGA-69-A59K-01 16 34739751 34739751 G T RP11-80F22.15 RNA 0.58 TCGA-69-A59K-01 16 3645675 3645675 G A SLX4 Silent p.G648G 0.10 TCGA-69-A59K-01 16 50250031 50250031 C G PAPD5 Silent p.L270L 0.16 TCGA-69-A59K-01 16 54319090 54319090 C A IRX3 Missense_Mutation p.G235W 0.44 deleterious(0.01) probably_damaging(0.965) TCGA-69-A59K-01 16 55513374 55513374 G T MMP2 5'UTR 0.38 TCGA-69-A59K-01 16 61687460 61687460 C A CDH8 3'UTR 0.17 TCGA-69-A59K-01 16 61760861 61760861 G C CDH8 Intron 0.19 TCGA-69-A59K-01 16 66956151 66956151 C A RRAD Missense_Mutation p.R252L 0.15 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 16 67686425 67686425 G T RLTPR Silent p.L956L 0.09 TCGA-69-A59K-01 16 69369095 69369095 G A COG8 Missense_Mutation p.L248F 0.11 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 16 71668340 71668340 C G MARVELD3 Intron 0.14 TCGA-69-A59K-01 17 10347929 10347929 C T MYH4 Missense_Mutation p.E1887K 0.40 deleterious(0) probably_damaging(0.999) TCGA-69-A59K-01 17 10428342 10428342 T A MYH2 Missense_Mutation p.Q1568L 0.35 deleterious(0.01) possibly_damaging(0.827) TCGA-69-A59K-01 17 21731236 21731236 G T UBBP4 Intron 0.26 TCGA-69-A59K-01 17 26851022 26851022 C T FOXN1 Missense_Mutation p.T12M 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.518) TCGA-69-A59K-01 17 33520882 33520882 G T SLC35G3 Missense_Mutation p.L149I 0.35 tolerated(0.07) possibly_damaging(0.447) TCGA-69-A59K-01 17 34869519 34869519 T A MYO19 Missense_Mutation p.E257V 0.35 deleterious(0.03) possibly_damaging(0.85) TCGA-69-A59K-01 17 38420855 38420855 G T WIPF2 Missense_Mutation p.A143S 0.09 tolerated(0.28) benign(0.018) TCGA-69-A59K-01 17 38854353 38854353 G T KRT24 3'UTR 0.44 TCGA-69-A59K-01 17 39021133 39021133 C A KRT12 Silent p.L244L 0.15 TCGA-69-A59K-01 17 40975821 40975821 C T BECN1 Silent p.L25L 0.18 TCGA-69-A59K-01 17 42457436 42457438 GGT A ITGA2B Frame_Shift_Del p.T562Yfs*24 0.28 TCGA-69-A59K-01 17 42855203 42855203 G A ADAM11 Missense_Mutation p.G681E 0.28 tolerated(0.63) benign(0.005) TCGA-69-A59K-01 17 42990792 42990792 G T GFAP Silent p.R209R 0.23 TCGA-69-A59K-01 17 45385002 45385002 C A ITGB3 Missense_Mutation p.T767K 0.11 deleterious(0) probably_damaging(0.93) TCGA-69-A59K-01 17 51902436 51902436 G A KIF2B 3'UTR 0.30 TCGA-69-A59K-01 17 56389736 56389736 C A BZRAP1 Nonsense_Mutation p.E816* 0.38 TCGA-69-A59K-01 17 7577097 7577097 C A TP53 Missense_Mutation p.D281Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-69-A59K-01 17 78055573 78055573 C T CCDC40 Silent p.L597L 0.33 TCGA-69-A59K-01 17 8285499 8285499 C T RPL26 Missense_Mutation p.V44M 0.11 deleterious(0) benign(0.437) TCGA-69-A59K-01 18 19780715 19780715 A T GATA6 Missense_Mutation p.S573C 0.31 deleterious(0) possibly_damaging(0.792) TCGA-69-A59K-01 18 21010592 21010592 C A TMEM241 Intron 0.37 TCGA-69-A59K-01 18 21456355 21456355 G T LAMA3 Missense_Mutation p.G1699V 0.35 possibly_damaging(0.862) TCGA-69-A59K-01 18 28651722 28651722 C A DSC2 Missense_Mutation p.M658I 0.16 tolerated(0.4) benign(0.004) TCGA-69-A59K-01 18 28722002 28722002 G T DSC1 Missense_Mutation p.T407K 0.38 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 18 29044073 29044073 G T DSG3 Splice_Site p.X334_splice 0.32 TCGA-69-A59K-01 18 30903521 30903521 G A CCDC178 Missense_Mutation p.A319V 0.29 tolerated(0.34) benign(0.094) TCGA-69-A59K-01 18 47811486 47811486 G C CXXC1 Silent p.V266V 0.16 TCGA-69-A59K-01 18 59170188 59170188 G T CDH20 Missense_Mutation p.V222L 0.27 tolerated(0.1) benign(0.002) TCGA-69-A59K-01 18 61322794 61322794 G C SERPINB3 3'UTR 0.41 TCGA-69-A59K-01 18 61322898 61322898 G T SERPINB3 Missense_Mutation p.S389Y 0.33 deleterious(0) probably_damaging(0.968) TCGA-69-A59K-01 18 66678336 66678336 G A CCDC102B Missense_Mutation p.D477N 0.23 tolerated(0.41) benign(0.062) TCGA-69-A59K-01 19 14952518 14952518 G A OR7A10 Missense_Mutation p.P58S 0.35 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-69-A59K-01 19 14952520 14952520 G T OR7A10 Missense_Mutation p.T57N 0.36 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-69-A59K-01 19 16008416 16008416 G T CYP4F2 Silent p.S2S 0.42 TCGA-69-A59K-01 19 16178427 16178427 G A TPM4 5'UTR 0.16 TCGA-69-A59K-01 19 16611991 16611991 A T C19orf44 Nonsense_Mutation p.R130* 0.33 TCGA-69-A59K-01 19 17660373 17660373 A T FAM129C Intron 0.16 TCGA-69-A59K-01 19 17942126 17942126 G C JAK3 Silent p.V963V 0.18 TCGA-69-A59K-01 19 22155264 22155264 C A ZNF208 Nonsense_Mutation p.E858* 0.28 TCGA-69-A59K-01 19 22785209 22785209 C A AC011467.1 5'Flank 0.46 TCGA-69-A59K-01 19 24309079 24309079 G C ZNF254 Missense_Mutation p.D93H 0.05 deleterious(0.05) benign(0.349) TCGA-69-A59K-01 19 37854657 37854657 C T HKR1 Nonsense_Mutation p.Q654* 0.16 TCGA-69-A59K-01 19 38198824 38198824 C T ZNF607 Missense_Mutation p.E76K 0.33 tolerated(0.84) benign(0.041) TCGA-69-A59K-01 19 39998719 39998719 G T DLL3 3'UTR 0.20 TCGA-69-A59K-01 19 42560892 42560892 G T GRIK5 Silent p.P275P 0.31 TCGA-69-A59K-01 19 49519393 49519393 A T LHB Missense_Mutation p.C120S 0.35 deleterious(0) probably_damaging(0.998) TCGA-69-A59K-01 19 50249879 50249879 C A TSKS Missense_Mutation p.Q280H 0.41 tolerated(0.16) possibly_damaging(0.735) TCGA-69-A59K-01 19 51171707 51171707 G T SHANK1 Silent p.R1170R 0.33 TCGA-69-A59K-01 19 52133151 52133151 C T SIGLEC5 Missense_Mutation p.R119H 0.10 tolerated(0.07) benign(0.309) TCGA-69-A59K-01 19 52954934 52954934 T A ZNF578 5'Flank 0.31 TCGA-69-A59K-01 19 55697675 55697675 G C PTPRH Missense_Mutation p.T899R 0.36 probably_damaging(0.998) TCGA-69-A59K-01 19 57176384 57176384 T A ZNF835 Silent p.P61P 0.06 TCGA-69-A59K-01 19 5997168 5997168 T A RFX2 Missense_Mutation p.H639L 0.26 deleterious(0) probably_damaging(0.998) TCGA-69-A59K-01 19 7747565 7747565 C T TRAPPC5 Silent p.F142F 0.33 TCGA-69-A59K-01 1 103345250 103345250 C A COL11A1 Missense_Mutation p.D1755Y 0.20 unknown(0) TCGA-69-A59K-01 1 104113127 104113127 G T AMY2B Intron 0.38 TCGA-69-A59K-01 1 109103096 109103096 G C FAM102B Missense_Mutation p.E16Q 0.17 tolerated(0.11) benign(0.016) TCGA-69-A59K-01 1 110292941 110292941 G T EPS8L3 3'UTR 0.31 TCGA-69-A59K-01 1 115222305 115222305 C T AMPD1 Silent p.L297L 0.20 TCGA-69-A59K-01 1 117560899 117560899 G A CD101 Silent p.T578T 0.08 TCGA-69-A59K-01 1 144828587 144828587 G A NBPF9 Missense_Mutation p.D619N 0.23 deleterious(0.05) probably_damaging(0.996) TCGA-69-A59K-01 1 150776578 150776578 C A CTSK Silent p.G179G 0.25 TCGA-69-A59K-01 1 150960578 150960578 T C ANXA9 Missense_Mutation p.Y237H 0.14 deleterious(0.01) benign(0.272) TCGA-69-A59K-01 1 152188037 152188037 G T HRNR Nonsense_Mutation p.S2023* 0.03 TCGA-69-A59K-01 1 152192336 152192336 C T HRNR Missense_Mutation p.R590H 0.23 unknown(0) TCGA-69-A59K-01 1 153615794 153615794 G C CHTOP Silent p.G165G 0.13 TCGA-69-A59K-01 1 15420855 15420855 T A KAZN Missense_Mutation p.C468S 0.18 deleterious(0) benign(0.058) TCGA-69-A59K-01 1 154989067 154989067 G T ZBTB7B Missense_Mutation p.G543V 0.23 deleterious_low_confidence(0.01) benign(0.105) TCGA-69-A59K-01 1 155295191 155295191 G T RUSC1 Missense_Mutation p.A540S 0.29 tolerated(0.38) possibly_damaging(0.896) TCGA-69-A59K-01 1 157740232 157740232 T C FCRL2 Missense_Mutation p.K93E 0.19 tolerated(0.77) benign(0.004) TCGA-69-A59K-01 1 158651357 158651357 A G SPTA1 Missense_Mutation p.V164A 0.25 tolerated(0.16) benign(0.045) TCGA-69-A59K-01 1 160722000 160722000 G T SLAMF7 Missense_Mutation p.A300S 0.22 tolerated(0.16) benign(0.344) TCGA-69-A59K-01 1 160914954 160914954 C T ITLN2 Silent p.A318A 0.09 TCGA-69-A59K-01 1 161514527 161514527 C A FCGR3A Missense_Mutation p.V217L 0.27 tolerated(0.58) benign(0.014) TCGA-69-A59K-01 1 162824943 162824943 C A C1orf110 Missense_Mutation p.G174V 0.25 deleterious(0) possibly_damaging(0.666) TCGA-69-A59K-01 1 165872471 165872471 G T UCK2 Missense_Mutation p.Q184H 0.27 deleterious(0.03) probably_damaging(0.993) TCGA-69-A59K-01 1 167038355 167038355 C T GPA33 Silent p.P73P 0.08 TCGA-69-A59K-01 1 169511215 169511215 G T F5 Missense_Mutation p.T1038K 0.24 tolerated(0.06) benign(0.297) TCGA-69-A59K-01 1 169566383 169566383 C G SELP Missense_Mutation p.E579D 0.22 tolerated(0.43) benign(0.017) TCGA-69-A59K-01 1 175066575 175066575 G T TNN Silent p.L537L 0.18 TCGA-69-A59K-01 1 175066705 175066705 G T TNN Nonsense_Mutation p.E581* 0.24 TCGA-69-A59K-01 1 17597453 17597453 C A PADI3 Missense_Mutation p.P304Q 0.27 tolerated(0.32) benign(0.014) TCGA-69-A59K-01 1 186332108 186332108 T C TPR Missense_Mutation p.E186G 0.11 benign(0.403) TCGA-69-A59K-01 1 190067282 190067282 G T BRINP3 Missense_Mutation p.L723I 0.10 tolerated(0.11) probably_damaging(0.991) TCGA-69-A59K-01 1 1961674 1961674 G T GABRD Missense_Mutation p.A438S 0.29 tolerated(0.68) benign(0.338) TCGA-69-A59K-01 1 200842960 200842960 C A GPR25 Silent p.A265A 0.26 TCGA-69-A59K-01 1 201009429 201009429 G A CACNA1S Missense_Mutation p.P1767L 0.36 deleterious_low_confidence(0.01) benign(0.008) TCGA-69-A59K-01 1 201020186 201020186 C A CACNA1S Missense_Mutation p.G1347W 0.23 deleterious(0) probably_damaging(0.991) TCGA-69-A59K-01 1 201263116 201263116 C A PKP1 Silent p.T83T 0.32 TCGA-69-A59K-01 1 202850334 202850334 C A RABIF Missense_Mutation p.M48I 0.30 tolerated(0.11) probably_damaging(0.924) TCGA-69-A59K-01 1 204588911 204588911 G C LRRN2 Silent p.G70G 0.18 TCGA-69-A59K-01 1 211462556 211462556 G A RCOR3 Missense_Mutation p.G253R 0.10 deleterious(0.01) possibly_damaging(0.67) TCGA-69-A59K-01 1 220935059 220935059 C T MARC2 Missense_Mutation p.T169I 0.27 deleterious(0) probably_damaging(0.979) TCGA-69-A59K-01 1 220936352 220936352 G T MARC2 Missense_Mutation p.R237M 0.18 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 1 223402558 223402579 TTGATAAGAAGGAAACCACTCT - SUSD4 Frame_Shift_Del p.E293Sfs*18 0.08 TCGA-69-A59K-01 1 228210416 228210416 C T WNT3A Silent p.I40I 0.20 TCGA-69-A59K-01 1 228468275 228468275 G T OBSCN Nonsense_Mutation p.E3088* 0.29 TCGA-69-A59K-01 1 229771970 229771970 T A URB2 Missense_Mutation p.L537Q 0.18 deleterious(0) possibly_damaging(0.87) TCGA-69-A59K-01 1 235955264 235955264 C T LYST Silent p.L1426L 0.25 TCGA-69-A59K-01 1 236143209 236143209 G T NID1 Missense_Mutation p.P1141H 0.25 tolerated(0.57) benign(0.003) TCGA-69-A59K-01 1 240256553 240256553 C G FMN2 Missense_Mutation p.P382A 0.24 unknown(0) TCGA-69-A59K-01 1 240370131 240370131 C A FMN2 Silent p.A673A 0.31 TCGA-69-A59K-01 1 241033401 241033401 C G RGS7 Missense_Mutation p.R135T 0.10 deleterious(0) probably_damaging(0.983) TCGA-69-A59K-01 1 241667486 241667486 C A FH Missense_Mutation p.V322F 0.14 deleterious(0) probably_damaging(0.978) TCGA-69-A59K-01 1 2428049 2428049 G T PLCH2 Silent p.A586A 0.23 TCGA-69-A59K-01 1 245847653 245847653 C A KIF26B Missense_Mutation p.Q793K 0.23 deleterious(0) unknown(0) TCGA-69-A59K-01 1 248004939 248004939 G A OR11L1 Missense_Mutation p.S87F 0.07 tolerated(0.08) benign(0.006) TCGA-69-A59K-01 1 248039452 248039452 G T TRIM58 Silent p.T374T 0.26 TCGA-69-A59K-01 1 248059675 248059675 G T OR2W3 Nonsense_Mutation p.G263* 0.26 TCGA-69-A59K-01 1 248059676 248059676 G T OR2W3 Missense_Mutation p.G263V 0.26 tolerated(0.06) benign(0.119) TCGA-69-A59K-01 1 248525017 248525017 C A OR2T4 Silent p.I45I 0.15 TCGA-69-A59K-01 1 248636926 248636926 C G OR2T3 Missense_Mutation p.T92S 0.15 tolerated(1) possibly_damaging(0.53) TCGA-69-A59K-01 1 248684954 248684954 G T OR2G6 Nonsense_Mutation p.E3* 0.25 TCGA-69-A59K-01 1 248684984 248684984 C T OR2G6 Missense_Mutation p.L13F 0.24 deleterious(0.02) benign(0.021) TCGA-69-A59K-01 1 26650714 26650714 C A AIM1L Missense_Mutation p.V682L 0.20 deleterious(0) probably_damaging(0.997) TCGA-69-A59K-01 1 3397169 3397169 G T ARHGEF16 3'UTR 0.33 TCGA-69-A59K-01 1 34090806 34090806 C T CSMD2 Missense_Mutation p.R1742H 0.26 deleterious(0) probably_damaging(0.992) TCGA-69-A59K-01 1 34090807 34090807 G T CSMD2 Missense_Mutation p.R1742S 0.27 deleterious(0.03) probably_damaging(0.976) TCGA-69-A59K-01 1 34102010 34102010 A C CSMD2 Missense_Mutation p.L1600R 0.12 deleterious(0) possibly_damaging(0.673) TCGA-69-A59K-01 1 3662336 3662336 C A TP73-AS1 RNA 0.28 TCGA-69-A59K-01 1 38079922 38079922 G A RSPO1 Missense_Mutation p.R124C 0.17 deleterious(0) probably_damaging(0.943) TCGA-69-A59K-01 1 43870150 43870150 A T SZT2 Missense_Mutation p.I143F 0.20 tolerated(0.69) possibly_damaging(0.881) TCGA-69-A59K-01 1 44160431 44160431 C G KDM4A Missense_Mutation p.Q846E 0.23 deleterious(0.01) possibly_damaging(0.848) TCGA-69-A59K-01 1 53930491 53930491 T C DMRTB1 Missense_Mutation p.V311A 0.27 tolerated(0.07) benign(0.272) TCGA-69-A59K-01 1 53975609 53975609 C A GLIS1 Missense_Mutation p.G484W 0.22 deleterious(0) possibly_damaging(0.621) TCGA-69-A59K-01 1 57476405 57476405 G T DAB1 Missense_Mutation p.P544H 0.11 deleterious(0) probably_damaging(0.978) TCGA-69-A59K-01 1 66833499 66833499 A T PDE4B Missense_Mutation p.Q502L 0.18 deleterious(0.01) probably_damaging(0.918) TCGA-69-A59K-01 1 70518717 70518717 C A LRRC7 Silent p.S1335S 0.29 TCGA-69-A59K-01 1 71477782 71477782 C - PTGER3 Intron 0.21 TCGA-69-A59K-01 1 71544196 71544196 C T ZRANB2 Silent p.K54K 0.14 TCGA-69-A59K-01 1 74507088 74507088 G T LRRIQ3 Silent p.S509S 0.23 TCGA-69-A59K-01 1 78187554 78187554 T A USP33 Missense_Mutation p.D571V 0.06 deleterious(0) probably_damaging(0.991) TCGA-69-A59K-01 1 86196212 86196212 G A COL24A1 3'UTR 0.10 TCGA-69-A59K-01 1 89418820 89418820 C G CCBL2 Missense_Mutation p.G294R 0.14 deleterious(0.01) possibly_damaging(0.836) TCGA-69-A59K-01 1 9009398 9009398 A G CA6 Silent p.L52L 0.08 TCGA-69-A59K-01 1 977494 977494 G C AGRN Missense_Mutation p.E446Q 0.15 tolerated(0.09) possibly_damaging(0.728) TCGA-69-A59K-01 1 99762419 99762419 C A LPPR4 Missense_Mutation p.F178L 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-69-A59K-01 1 99771274 99771274 G A LPPR4 Missense_Mutation p.D334N 0.34 tolerated(0.09) benign(0.046) TCGA-69-A59K-01 20 10030541 10030541 G A ANKEF1 Missense_Mutation p.A442T 0.19 tolerated(0.58) benign(0.007) TCGA-69-A59K-01 20 10629241 10629241 A T JAG1 Missense_Mutation p.F509I 0.23 deleterious(0) probably_damaging(0.986) TCGA-69-A59K-01 20 20140047 20140047 G T C20orf26 Missense_Mutation p.A329S 0.08 tolerated(0.75) benign(0.005) TCGA-69-A59K-01 20 21687276 21687276 G A PAX1 Missense_Mutation p.G163R 0.17 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 20 30686915 30686915 C A HCK Missense_Mutation p.T452N 0.24 deleterious(0) possibly_damaging(0.806) TCGA-69-A59K-01 20 31627263 31627263 C A BPIFB6 Silent p.T337T 0.16 TCGA-69-A59K-01 20 35757437 35757437 C A MROH8 Missense_Mutation p.A622S 0.16 deleterious(0) probably_damaging(0.999) TCGA-69-A59K-01 20 36852029 36852029 G T KIAA1755 Missense_Mutation p.P727T 0.10 tolerated(0.07) benign(0.382) TCGA-69-A59K-01 20 40790053 40790053 A T PTPRT Nonsense_Mutation p.L874* 0.15 TCGA-69-A59K-01 20 41100956 41100956 G T PTPRT Missense_Mutation p.P467H 0.45 deleterious(0) possibly_damaging(0.725) TCGA-69-A59K-01 20 42271157 42271157 G T IFT52 Missense_Mutation p.G387C 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-69-A59K-01 20 4680221 4680221 G A PRNP Missense_Mutation p.G119R 0.21 deleterious(0.05) probably_damaging(0.935) TCGA-69-A59K-01 20 50287704 50287704 G A ATP9A Missense_Mutation p.T377M 0.15 deleterious(0) possibly_damaging(0.493) TCGA-69-A59K-01 20 58645033 58645033 G T C20orf197 Missense_Mutation p.V2F 0.15 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-69-A59K-01 21 15599675 15599675 T C RBM11 3'UTR 0.16 TCGA-69-A59K-01 21 28209851 28209851 C G ADAMTS1 3'UTR 0.10 TCGA-69-A59K-01 21 32253339 32253339 G A KRTAP11-1 3'UTR 0.31 TCGA-69-A59K-01 21 32253724 32253724 G T KRTAP11-1 Silent p.I40I 0.30 TCGA-69-A59K-01 21 41711343 41711343 C T DSCAM Splice_Site p.X404_splice 0.23 TCGA-69-A59K-01 21 43857595 43857595 C A UBASH3A Intron 0.41 TCGA-69-A59K-01 22 16287446 16287446 C A POTEH Missense_Mutation p.R147M 0.25 deleterious(0) benign(0.438) TCGA-69-A59K-01 22 21272460 21272460 C G CRKL Missense_Mutation p.H80D 0.23 tolerated(1) benign(0.013) TCGA-69-A59K-01 22 30782131 30782131 C T RNF215 Splice_Site p.X144_splice 0.46 TCGA-69-A59K-01 22 32506288 32506288 C A SLC5A1 3'UTR 0.47 TCGA-69-A59K-01 22 35796517 35796517 C G MCM5 Missense_Mutation p.S29W 0.49 deleterious(0.04) possibly_damaging(0.473) TCGA-69-A59K-01 22 35812739 35812739 C A MCM5 Missense_Mutation p.P508T 0.16 tolerated(1) probably_damaging(0.913) TCGA-69-A59K-01 22 35948169 35948169 C A RASD2 3'UTR 0.55 TCGA-69-A59K-01 22 38229026 38229026 A G ANKRD54 Missense_Mutation p.L220P 0.17 deleterious(0) probably_damaging(0.999) TCGA-69-A59K-01 2 101670703 101670703 G A TBC1D8 Silent p.F151F 0.23 TCGA-69-A59K-01 2 103039720 103039720 C A IL18RAP 5'UTR 0.13 TCGA-69-A59K-01 2 103063530 103063530 T A IL18RAP Missense_Mutation p.V358E 0.29 deleterious(0.01) probably_damaging(0.917) TCGA-69-A59K-01 2 107459732 107459732 G A ST6GAL2 Silent p.H234H 0.40 TCGA-69-A59K-01 2 108622658 108622658 G T SLC5A7 Missense_Mutation p.D299Y 0.22 deleterious(0) probably_damaging(0.926) TCGA-69-A59K-01 2 108863677 108863677 C A SULT1C3 Silent p.P9P 0.23 TCGA-69-A59K-01 2 109547478 109547478 C T EDAR 5'UTR 0.31 TCGA-69-A59K-01 2 112942840 112942840 G T FBLN7 Missense_Mutation p.G291C 0.24 tolerated(0.17) probably_damaging(0.997) TCGA-69-A59K-01 2 122520584 122520584 A T TSN Missense_Mutation p.E126V 0.14 tolerated(0.07) benign(0.057) TCGA-69-A59K-01 2 128186061 128186061 G A PROC Missense_Mutation p.A309T 0.24 tolerated(0.1) benign(0.219) TCGA-69-A59K-01 2 138373751 138373751 G C THSD7B Missense_Mutation p.D1147H 0.23 tolerated(0.08) unknown(0) TCGA-69-A59K-01 2 141272280 141272280 C A LRP1B Missense_Mutation p.W2737C 0.25 probably_damaging(0.926) TCGA-69-A59K-01 2 152579940 152579940 G C NEB Missense_Mutation p.P225A 0.39 possibly_damaging(0.591) TCGA-69-A59K-01 2 155158050 155158050 G T GALNT13 Silent p.L368L 0.24 TCGA-69-A59K-01 2 162273508 162273508 A T TBR1 Missense_Mutation p.Q196L 0.25 tolerated(0.79) possibly_damaging(0.775) TCGA-69-A59K-01 2 166245867 166245867 C A SCN2A Silent p.R1851R 0.28 TCGA-69-A59K-01 2 166893017 166893017 C A SCN1A Missense_Mutation p.L990F 0.17 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 2 168115654 168115654 A T XIRP2 3'UTR 0.34 TCGA-69-A59K-01 2 171704266 171704266 T C GAD1 Silent p.D361D 0.23 TCGA-69-A59K-01 2 175260440 175260440 C A CIR1 5'UTR 0.22 TCGA-69-A59K-01 2 179451278 179451278 A T TTN Missense_Mutation p.S21450R 0.26 TCGA-69-A59K-01 2 179501219 179501219 G T TTN Silent p.I13745I 0.21 TCGA-69-A59K-01 2 179593035 179593035 C A TTN Missense_Mutation p.G6506C 0.23 TCGA-69-A59K-01 2 179593275 179593275 C A TTN Nonsense_Mutation p.E6460* 0.34 TCGA-69-A59K-01 2 186678574 186678574 A G FSIP2 Silent p.K6799K 0.11 TCGA-69-A59K-01 2 189871714 189871714 C A COL3A1 Missense_Mutation p.P1085T 0.23 probably_damaging(0.984) TCGA-69-A59K-01 2 190719671 190719671 G T PMS1 Missense_Mutation p.G558V 0.32 deleterious(0) probably_damaging(0.988) TCGA-69-A59K-01 2 198415435 198415435 G T HSPE1-MOB4 3'UTR 0.19 TCGA-69-A59K-01 2 198953731 198953731 G T PLCL1 Missense_Mutation p.E955D 0.21 deleterious(0.05) possibly_damaging(0.473) TCGA-69-A59K-01 2 201438629 201438629 G T SGOL2 Missense_Mutation p.S1187I 0.35 deleterious(0.04) possibly_damaging(0.509) TCGA-69-A59K-01 2 209051765 209051765 C T C2orf80 5'UTR 0.24 TCGA-69-A59K-01 2 211518812 211518812 G T CPS1 Missense_Mutation p.G1188C 0.25 deleterious(0.01) possibly_damaging(0.792) TCGA-69-A59K-01 2 213403195 213403195 G T ERBB4 Silent p.V20V 0.19 TCGA-69-A59K-01 2 215645722 215645722 C T BARD1 Silent p.K292K 0.17 TCGA-69-A59K-01 2 216262472 216262472 C T FN1 Missense_Mutation p.V1150I 0.12 tolerated(0.37) benign(0.004) TCGA-69-A59K-01 2 220028137 220028137 G A SLC23A3 Missense_Mutation p.R480W 0.10 deleterious(0.03) benign(0.056) TCGA-69-A59K-01 2 220424097 220424097 C A OBSL1 Missense_Mutation p.G1026W 0.20 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 2 223574475 223574475 C G MOGAT1 Missense_Mutation p.R292G 0.31 tolerated(0.14) benign(0.138) TCGA-69-A59K-01 2 225706586 225706586 C A DOCK10 Nonsense_Mutation p.E866* 0.23 TCGA-69-A59K-01 2 230723835 230723835 G C TRIP12 Nonsense_Mutation p.S185* 0.23 TCGA-69-A59K-01 2 231256883 231256883 G T SP140L Missense_Mutation p.R349I 0.20 deleterious(0.01) probably_damaging(0.983) TCGA-69-A59K-01 2 233243716 233243716 G A ALPP Missense_Mutation p.A38T 0.31 deleterious(0) probably_damaging(0.911) TCGA-69-A59K-01 2 233404810 233404810 T A CHRNG Missense_Mutation p.L55Q 0.29 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 2 238277615 238277615 G T COL6A3 Silent p.A1497A 0.22 TCGA-69-A59K-01 2 240984704 240984704 G T OR6B3 Silent p.P262P 0.24 TCGA-69-A59K-01 2 24253772 24253772 G A C2orf44 3'UTR 0.16 TCGA-69-A59K-01 2 242757559 242757559 C A NEU4 Missense_Mutation p.L227I 0.37 deleterious(0.04) possibly_damaging(0.837) TCGA-69-A59K-01 2 24432712 24432712 T C ITSN2 Missense_Mutation p.N1483S 0.15 tolerated(0.17) unknown(0) TCGA-69-A59K-01 2 26707466 26707466 C A OTOF Missense_Mutation p.D361Y 0.29 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 2 32715201 32715201 C G BIRC6 Missense_Mutation p.T2730R 0.22 benign(0.262) TCGA-69-A59K-01 2 33335697 33335697 C G LTBP1 Silent p.T304T 0.23 TCGA-69-A59K-01 2 33482359 33482359 A T LTBP1 Nonsense_Mutation p.K726* 0.23 TCGA-69-A59K-01 2 54856417 54856417 C T SPTBN1 Missense_Mutation p.R716C 0.15 deleterious(0.04) possibly_damaging(0.717) TCGA-69-A59K-01 2 6991788 6991788 G A CMPK2 Missense_Mutation p.A340V 0.13 deleterious(0) probably_damaging(0.92) TCGA-69-A59K-01 2 77748866 77748866 C T LRRTM4 5'UTR 0.12 TCGA-69-A59K-01 2 79384200 79384200 C A REG3A 3'UTR 0.25 TCGA-69-A59K-01 2 8871907 8871907 T A KIDINS220 Missense_Mutation p.Q1420L 0.12 tolerated_low_confidence(0.11) benign(0.028) TCGA-69-A59K-01 2 89246900 89246900 C A IGKV1-5 Silent p.G90G 0.27 TCGA-69-A59K-01 3 100275603 100275603 G T TMEM45A Splice_Site p.X64_splice 0.47 TCGA-69-A59K-01 3 111325562 111325562 C A CD96 Nonsense_Mutation p.S384* 0.09 TCGA-69-A59K-01 3 111604428 111604428 C T PHLDB2 Intron 0.38 TCGA-69-A59K-01 3 111797686 111797686 C A TMPRSS7 Silent p.L648L 0.19 TCGA-69-A59K-01 3 111983046 111983046 C A SLC9C1 Splice_Site p.X341_splice 0.38 TCGA-69-A59K-01 3 122630889 122630889 C A SEMA5B Missense_Mutation p.S1029I 0.31 deleterious(0) benign(0.361) TCGA-69-A59K-01 3 127785970 127785970 G T SEC61A1 Silent p.L317L 0.11 TCGA-69-A59K-01 3 129276009 129276009 C T PLXND1 Missense_Mutation p.V1835M 0.22 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 3 13363820 13363820 C A NUP210 Missense_Mutation p.Q1596H 0.33 deleterious(0.03) benign(0.052) TCGA-69-A59K-01 3 143567294 143567294 G T SLC9A9 5'UTR 0.12 TCGA-69-A59K-01 3 147106565 147106565 G T ZIC4 3'UTR 0.47 TCGA-69-A59K-01 3 148558729 148558729 C T CPB1 Silent p.T147T 0.08 TCGA-69-A59K-01 3 16269023 16269023 G - GALNT15 3'UTR 0.24 TCGA-69-A59K-01 3 164709984 164709984 C T SI Missense_Mutation p.R1655Q 0.21 tolerated(0.06) probably_damaging(1) TCGA-69-A59K-01 3 164908063 164908063 G T SLITRK3 Missense_Mutation p.P186T 0.28 tolerated(0.14) probably_damaging(0.999) TCGA-69-A59K-01 3 167045847 167045847 A T ZBBX Missense_Mutation p.C249S 0.23 tolerated(0.11) benign(0.071) TCGA-69-A59K-01 3 172165688 172165688 G A GHSR Silent p.F172F 0.15 TCGA-69-A59K-01 3 175165127 175165127 G T NAALADL2 Nonsense_Mutation p.E401* 0.25 TCGA-69-A59K-01 3 180377362 180377362 A T CCDC39 Missense_Mutation p.L206M 0.19 tolerated(0.06) probably_damaging(0.95) TCGA-69-A59K-01 3 183210493 183210493 G T KLHL6 Silent p.A451A 0.33 TCGA-69-A59K-01 3 183700403 183700403 T C ABCC5 Missense_Mutation p.I279V 0.20 tolerated(0.56) benign(0.007) TCGA-69-A59K-01 3 184076081 184076081 G A CLCN2 Missense_Mutation p.R124W 0.21 tolerated(0.15) benign(0.339) TCGA-69-A59K-01 3 185329452 185329452 C T SENP2 Nonsense_Mutation p.Q246* 0.12 TCGA-69-A59K-01 3 197430492 197430492 G A KIAA0226 Missense_Mutation p.T166M 0.36 deleterious(0.01) probably_damaging(0.951) TCGA-69-A59K-01 3 25542757 25542757 A G RARB Missense_Mutation p.N131D 0.15 deleterious(0.01) benign(0.016) TCGA-69-A59K-01 3 25686963 25686963 T C TOP2B Intron 0.40 TCGA-69-A59K-01 3 28476604 28476604 G T ZCWPW2 Missense_Mutation p.W112C 0.32 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 3 33653500 33653500 C A CLASP2 Missense_Mutation p.V462L 0.15 tolerated(0.18) probably_damaging(0.995) TCGA-69-A59K-01 3 42734578 42734578 G T HHATL Missense_Mutation p.L461I 0.33 tolerated(0.56) benign(0.012) TCGA-69-A59K-01 3 46063307 46063307 T C XCR1 Missense_Mutation p.S45G 0.08 deleterious(0.02) probably_damaging(0.977) TCGA-69-A59K-01 3 46063308 46063308 G T XCR1 Silent p.L44L 0.09 TCGA-69-A59K-01 3 49399951 49399951 C A RHOA Missense_Mutation p.R129L 0.30 tolerated(0.06) benign(0.005) TCGA-69-A59K-01 3 62503856 62503856 T A CADPS Silent p.R787R 0.06 TCGA-69-A59K-01 3 77147245 77147245 A C ROBO2 Missense_Mutation p.T64P 0.12 deleterious(0) unknown(0) TCGA-69-A59K-01 3 81627205 81627205 C T GBE1 Missense_Mutation p.A497T 0.15 deleterious(0.01) possibly_damaging(0.735) TCGA-69-A59K-01 3 81640267 81640267 T A GBE1 Missense_Mutation p.D386V 0.52 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 3 89445035 89445035 G T EPHA3 Missense_Mutation p.S452I 0.38 deleterious(0) possibly_damaging(0.58) TCGA-69-A59K-01 3 89448588 89448588 G T EPHA3 Missense_Mutation p.G518W 0.28 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 4 100242533 100242533 T C ADH1B 5'UTR 0.11 TCGA-69-A59K-01 4 113333052 113333052 C T ALPK1 Missense_Mutation p.R116W 0.24 deleterious(0.02) possibly_damaging(0.874) TCGA-69-A59K-01 4 147861027 147861027 C A TTC29 Silent p.L7L 0.18 TCGA-69-A59K-01 4 156752976 156752976 C A ASIC5 Missense_Mutation p.A443S 0.24 tolerated(0.47) benign(0.062) TCGA-69-A59K-01 4 159533320 159533320 G T RXFP1 Missense_Mutation p.G192V 0.24 deleterious(0.03) possibly_damaging(0.482) TCGA-69-A59K-01 4 164247029 164247029 A T NPY1R Missense_Mutation p.F226L 0.41 tolerated(0.41) possibly_damaging(0.524) TCGA-69-A59K-01 4 164272170 164272170 C A NPY5R Missense_Mutation p.L249I 0.28 tolerated(0.22) benign(0.074) TCGA-69-A59K-01 4 164272805 164272805 C A NPY5R 3'UTR 0.34 TCGA-69-A59K-01 4 166226778 166226778 G T KLHL2 Missense_Mutation p.G318C 0.25 deleterious(0) probably_damaging(0.999) TCGA-69-A59K-01 4 25416101 25416101 C T ANAPC4 Missense_Mutation p.R567C 0.19 tolerated(0.07) possibly_damaging(0.634) TCGA-69-A59K-01 4 52883687 52883687 T G LRRC66 Missense_Mutation p.L31F 0.11 tolerated(0.32) benign(0.015) TCGA-69-A59K-01 4 54347964 54347964 C A LNX1 Missense_Mutation p.D470Y 0.10 deleterious(0) possibly_damaging(0.897) TCGA-69-A59K-01 4 57350926 57350926 G T SRP72 Missense_Mutation p.A328S 0.16 tolerated(0.87) benign(0.002) TCGA-69-A59K-01 4 57350927 57350927 C G SRP72 Missense_Mutation p.A328G 0.16 tolerated(0.36) benign(0.005) TCGA-69-A59K-01 4 62845286 62845286 T A LPHN3 Missense_Mutation p.S869R 0.30 tolerated(0.44) benign(0.067) TCGA-69-A59K-01 4 650783 650783 T A PDE6B Missense_Mutation p.F410I 0.26 deleterious(0) probably_damaging(0.999) TCGA-69-A59K-01 4 66201699 66201699 G T EPHA5 Missense_Mutation p.L935M 0.26 tolerated(0.36) possibly_damaging(0.721) TCGA-69-A59K-01 4 68606440 68606440 G A GNRHR Silent p.L249L 0.13 TCGA-69-A59K-01 4 71388529 71388529 C A AMTN Missense_Mutation p.L38I 0.25 tolerated(0.16) possibly_damaging(0.756) TCGA-69-A59K-01 4 71630261 71630261 G T RUFY3 Missense_Mutation p.M180I 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-69-A59K-01 4 72618268 72618268 G - GC Frame_Shift_Del p.I474* 0.19 TCGA-69-A59K-01 4 83626503 83626503 T A SCD5 Missense_Mutation p.H99L 0.32 deleterious(0) probably_damaging(0.996) TCGA-69-A59K-01 4 89016684 89016684 T A ABCG2 Silent p.R575R 0.14 TCGA-69-A59K-01 4 94006169 94006169 A G GRID2 Missense_Mutation p.I90V 0.13 tolerated(0.3) possibly_damaging(0.627) TCGA-69-A59K-01 5 112399787 112399787 C G MCC Missense_Mutation p.A703P 0.33 tolerated(0.09) probably_damaging(0.996) TCGA-69-A59K-01 5 113740137 113740137 G T KCNN2 Missense_Mutation p.L195F 0.22 deleterious(0) probably_damaging(0.992) TCGA-69-A59K-01 5 128844873 128844873 C A ADAMTS19 Missense_Mutation p.S278Y 0.25 tolerated(0.07) probably_damaging(0.91) TCGA-69-A59K-01 5 13762944 13762944 C A DNAH5 Missense_Mutation p.D3390Y 0.19 probably_damaging(0.961) TCGA-69-A59K-01 5 13814734 13814734 C A DNAH5 Missense_Mutation p.D2404Y 0.19 possibly_damaging(0.861) TCGA-69-A59K-01 5 140187491 140187491 C G PCDHA4 Missense_Mutation p.P240R 0.40 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-69-A59K-01 5 140237317 140237317 C A PCDHA10 Missense_Mutation p.P562T 0.47 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-69-A59K-01 5 140480872 140480872 C A PCDHB3 Silent p.T213T 0.51 TCGA-69-A59K-01 5 140481977 140481977 C G PCDHB3 Missense_Mutation p.P582A 0.46 tolerated_low_confidence(0.73) benign(0.017) TCGA-69-A59K-01 5 140503207 140503207 G A PCDHB4 Missense_Mutation p.E543K 0.37 deleterious(0.01) benign(0.067) TCGA-69-A59K-01 5 140595063 140595063 C A PCDHB13 Nonsense_Mutation p.Y456* 0.40 TCGA-69-A59K-01 5 140725947 140725948 GA - PCDHGA3 Frame_Shift_Del p.S784Lfs*2 0.28 TCGA-69-A59K-01 5 140750329 140750329 T A PCDHGB3 Missense_Mutation p.I123N 0.15 deleterious(0) probably_damaging(0.999) TCGA-69-A59K-01 5 145379663 145379663 C A SH3RF2 Missense_Mutation p.P141T 0.55 deleterious(0) probably_damaging(0.933) TCGA-69-A59K-01 5 149585024 149585024 C A SLC6A7 Silent p.L513L 0.51 TCGA-69-A59K-01 5 151234689 151234689 G T GLRA1 Silent p.A203A 0.44 TCGA-69-A59K-01 5 156589441 156589441 G T FAM71B 3'UTR 0.50 TCGA-69-A59K-01 5 161324373 161324373 G T GABRA1 Missense_Mutation p.W439L 0.45 deleterious(0) probably_damaging(0.992) TCGA-69-A59K-01 5 169412906 169412906 C A DOCK2 Silent p.A991A 0.46 TCGA-69-A59K-01 5 169805586 169805586 G T KCNMB1 3'UTR 0.39 TCGA-69-A59K-01 5 177546595 177546595 C T N4BP3 Missense_Mutation p.A4V 0.45 tolerated_low_confidence(0.06) benign(0.003) TCGA-69-A59K-01 5 180377146 180377146 G T BTNL8 Missense_Mutation p.V369L 0.57 tolerated(0.49) benign(0.034) TCGA-69-A59K-01 5 19612563 19612563 T A CDH18 Missense_Mutation p.N264I 0.31 deleterious(0) probably_damaging(0.999) TCGA-69-A59K-01 5 32380207 32380207 C A ZFR Missense_Mutation p.A905S 0.08 tolerated(0.05) unknown(0) TCGA-69-A59K-01 5 37026368 37026368 C G NIPBL Missense_Mutation p.T1916S 0.37 tolerated(0.25) benign(0.288) TCGA-69-A59K-01 5 40936502 40936502 G T C7 Missense_Mutation p.D115Y 0.33 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 5 41195961 41195961 C A C6 Missense_Mutation p.G174W 0.35 deleterious(0) probably_damaging(0.973) TCGA-69-A59K-01 5 42699941 42699941 C A GHR Missense_Mutation p.P152H 0.15 deleterious(0) probably_damaging(0.999) TCGA-69-A59K-01 5 43280236 43280236 C A NIM1K Missense_Mutation p.P239H 0.25 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 5 71533893 71533893 T A MRPS27 Missense_Mutation p.Q115L 0.23 tolerated(0.08) probably_damaging(0.982) TCGA-69-A59K-01 5 7706913 7706913 G A ADCY2 Missense_Mutation p.G389E 0.23 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 5 9629909 9629909 G A TAS2R1 Missense_Mutation p.S79F 0.09 tolerated(0.4) benign(0.03) TCGA-69-A59K-01 6 106960438 106960438 G A AIM1 Silent p.A74A 0.31 TCGA-69-A59K-01 6 136582209 136582209 G T BCLAF1 3'UTR 0.10 TCGA-69-A59K-01 6 150343328 150343328 C A RAET1L Missense_Mutation p.G46V 0.42 deleterious(0.02) probably_damaging(0.997) TCGA-69-A59K-01 6 159672374 159672374 G T FNDC1 Silent p.P1625P 0.23 TCGA-69-A59K-01 6 28295182 28295182 G A ZSCAN31 Silent p.C170C 0.14 TCGA-69-A59K-01 6 31726584 31726584 G T MSH5 Missense_Mutation p.V420F 0.10 deleterious(0) probably_damaging(0.99) TCGA-69-A59K-01 6 35392494 35392494 A G PPARD Missense_Mutation p.N339S 0.29 deleterious(0) possibly_damaging(0.708) TCGA-69-A59K-01 6 41168753 41168753 A G TREML2 5'UTR 0.26 TCGA-69-A59K-01 6 51824738 51824738 G A PKHD1 Silent p.V1946V 0.17 TCGA-69-A59K-01 6 55192341 55192341 G T GFRAL 5'UTR 0.26 TCGA-69-A59K-01 6 56350124 56350124 T A DST Missense_Mutation p.I4442F 0.20 probably_damaging(0.999) TCGA-69-A59K-01 6 56484938 56484938 A T DST Intron 0.35 TCGA-69-A59K-01 6 66054017 66054017 C A EYS Missense_Mutation p.A505S 0.33 tolerated(0.78) benign(0.058) TCGA-69-A59K-01 6 66204723 66204723 C A EYS Missense_Mutation p.W194L 0.30 tolerated(0.62) possibly_damaging(0.888) TCGA-69-A59K-01 6 73815020 73815020 T - KCNQ5 Frame_Shift_Del p.L320Qfs*33 0.26 TCGA-69-A59K-01 6 84234113 84234113 A T PRSS35 Missense_Mutation p.D318V 0.41 deleterious(0.01) possibly_damaging(0.475) TCGA-69-A59K-01 6 99284119 99284119 C A POU3F2 3'UTR 0.44 TCGA-69-A59K-01 7 100085919 100085919 C T NYAP1 Missense_Mutation p.P192L 0.06 deleterious(0) probably_damaging(0.999) TCGA-69-A59K-01 7 102582778 102582779 - T LRRC17 Intron 0.24 TCGA-69-A59K-01 7 102614140 102614140 C A FBXL13 Intron 0.33 TCGA-69-A59K-01 7 106508460 106508460 C A PIK3CG Silent p.R152R 0.10 TCGA-69-A59K-01 7 107823244 107823244 A G NRCAM Missense_Mutation p.S809P 0.31 tolerated(0.2) probably_damaging(0.997) TCGA-69-A59K-01 7 121653847 121653847 G T PTPRZ1 Missense_Mutation p.A1583S 0.30 tolerated(0.12) benign(0.001) TCGA-69-A59K-01 7 122774529 122774529 G T SLC13A1 Missense_Mutation p.F289L 0.27 tolerated(0.13) benign(0.03) TCGA-69-A59K-01 7 123332735 123332735 G A WASL Missense_Mutation p.P338L 0.07 tolerated(0.52) unknown(0) TCGA-69-A59K-01 7 128489239 128489239 C T FLNC Silent p.S1644S 0.35 TCGA-69-A59K-01 7 134216769 134216769 G T AKR1B10 Missense_Mutation p.G115V 0.26 deleterious(0) probably_damaging(0.965) TCGA-69-A59K-01 7 138391295 138391295 G T ATP6V0A4 3'UTR 0.37 TCGA-69-A59K-01 7 138921844 138921844 G T UBN2 Splice_Site p.X187_splice 0.37 TCGA-69-A59K-01 7 141768483 141768483 C T MGAM Intron 0.34 TCGA-69-A59K-01 7 142232039 142232039 G T TRBV10-1 5'UTR 0.33 TCGA-69-A59K-01 7 142498730 142498738 CTGAAAAAC ATGAACAAG TRBC2 Missense_Mutation p.LKN3MNK 0.11 TCGA-69-A59K-01 7 142564291 142564291 G T EPHB6 Silent p.T505T 0.25 TCGA-69-A59K-01 7 148312574 148312574 G T C7orf33 3'UTR 0.32 TCGA-69-A59K-01 7 149522470 149522470 C T SSPO RNA 0.25 TCGA-69-A59K-01 7 151945027 151945027 G C KMT2C Missense_Mutation p.T831S 0.04 benign(0.075) TCGA-69-A59K-01 7 154561196 154561196 T C DPP6 Missense_Mutation p.I318T 0.11 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 7 21784589 21784589 G A DNAH11 Silent p.V2813V 0.26 TCGA-69-A59K-01 7 27186946 27186946 C T HOXA6 Silent p.Q141Q 0.06 TCGA-69-A59K-01 7 27209115 27209115 G T RP1-170O19.20 Intron 0.13 TCGA-69-A59K-01 7 27209116 27209116 G T RP1-170O19.20 Intron 0.13 TCGA-69-A59K-01 7 30094412 30094412 G T PLEKHA8 Missense_Mutation p.C295F 0.29 tolerated(0.07) benign(0.003) TCGA-69-A59K-01 7 37780049 37780049 C A GPR141 Silent p.P18P 0.10 TCGA-69-A59K-01 7 37780050 37780050 C A GPR141 Missense_Mutation p.H19N 0.10 tolerated(0.31) benign(0.052) TCGA-69-A59K-01 7 38431501 38431501 C A AMPH Missense_Mutation p.G576C 0.35 deleterious(0.01) benign(0.013) TCGA-69-A59K-01 7 38431502 38431502 C T AMPH Silent p.P575P 0.35 TCGA-69-A59K-01 7 41729269 41729269 C T INHBA Silent p.V420V 0.24 TCGA-69-A59K-01 7 45108139 45108139 G T CCM2 Silent p.V211V 0.36 TCGA-69-A59K-01 7 4796776 4796776 G C FOXK1 Missense_Mutation p.G401A 0.10 deleterious(0.02) possibly_damaging(0.8) TCGA-69-A59K-01 7 47970701 47970701 C A PKD1L1 Missense_Mutation p.S246I 0.43 deleterious(0) benign(0.017) TCGA-69-A59K-01 7 50450323 50450323 G T IKZF1 Silent p.G169G 0.19 TCGA-69-A59K-01 7 53103839 53103839 C T POM121L12 Missense_Mutation p.R159C 0.20 tolerated(0.12) probably_damaging(0.942) TCGA-69-A59K-01 7 64438541 64438541 C A ZNF117 Nonsense_Mutation p.E470* 0.32 TCGA-69-A59K-01 7 72861646 72861646 C T BAZ1B Silent p.E1264E 0.14 TCGA-69-A59K-01 7 81374423 81374423 G T HGF Silent p.T213T 0.45 TCGA-69-A59K-01 7 82387736 82387736 A T PCLO 3'UTR 0.43 TCGA-69-A59K-01 7 8475398 8475398 G T NXPH1 Splice_Site p.X18_splice 0.32 TCGA-69-A59K-01 7 88962934 88962934 C A ZNF804B Missense_Mutation p.A213E 0.19 deleterious(0.02) possibly_damaging(0.839) TCGA-69-A59K-01 7 92099038 92099038 C A ERVW-1 Missense_Mutation p.V220L 0.10 tolerated(0.24) benign(0.35) TCGA-69-A59K-01 7 93623671 93623671 T A BET1 Silent p.G76G 0.46 TCGA-69-A59K-01 7 94057032 94057032 C A COL1A2 Missense_Mutation p.Q1121K 0.46 unknown(0) TCGA-69-A59K-01 7 95814260 95814260 C A SLC25A13 Missense_Mutation p.G334C 0.40 tolerated(0.18) possibly_damaging(0.563) TCGA-69-A59K-01 7 99688551 99688551 C T COPS6 Silent p.V171V 0.39 TCGA-69-A59K-01 8 100779081 100779081 A T VPS13B Missense_Mutation p.K2402I 0.30 deleterious(0.04) possibly_damaging(0.902) TCGA-69-A59K-01 8 104225254 104225254 C A BAALC Missense_Mutation p.P90T 0.20 tolerated(0.08) benign(0.434) TCGA-69-A59K-01 8 10468873 10468873 C A RP1L1 Missense_Mutation p.S912I 0.26 benign(0.139) TCGA-69-A59K-01 8 10469545 10469545 C A RP1L1 Missense_Mutation p.R688M 0.12 benign(0.175) TCGA-69-A59K-01 8 108913229 108913229 G T RSPO2 3'UTR 0.32 TCGA-69-A59K-01 8 113348951 113348951 G T CSMD3 Missense_Mutation p.P2317T 0.27 tolerated(0.27) probably_damaging(0.98) TCGA-69-A59K-01 8 113363405 113363405 T A CSMD3 Missense_Mutation p.L2108F 0.29 deleterious(0) possibly_damaging(0.756) TCGA-69-A59K-01 8 113933877 113933877 C A CSMD3 Missense_Mutation p.D538Y 0.35 deleterious(0) probably_damaging(0.989) TCGA-69-A59K-01 8 113988287 113988287 G T CSMD3 Missense_Mutation p.P374H 0.26 tolerated_low_confidence(0.09) benign(0.004) TCGA-69-A59K-01 8 114448905 114448905 C A CSMD3 Splice_Site p.X60_splice 0.28 TCGA-69-A59K-01 8 11995031 11995031 G T USP17L2 Silent p.P413P 0.05 TCGA-69-A59K-01 8 122626662 122626662 G T HAS2 Missense_Mutation p.P449H 0.24 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 8 131104220 131104220 C A ASAP1 Missense_Mutation p.W857C 0.31 tolerated(0.3) benign(0.43) TCGA-69-A59K-01 8 133584700 133584700 C A LRRC6 Missense_Mutation p.D419Y 0.17 deleterious(0) probably_damaging(0.984) TCGA-69-A59K-01 8 139661907 139661907 C A COL22A1 Splice_Site p.X1149_splice 0.10 TCGA-69-A59K-01 8 14181674 14181674 G T SGCZ Silent p.R92R 0.30 TCGA-69-A59K-01 8 144297150 144297150 C T GPIHBP1 Silent p.T104T 0.28 TCGA-69-A59K-01 8 22079151 22079151 G T PHYHIP Silent p.I236I 0.19 TCGA-69-A59K-01 8 22475291 22475291 G C CCAR2 Missense_Mutation p.M691I 0.27 tolerated(0.3) benign(0.076) TCGA-69-A59K-01 8 23429107 23429107 G A SLC25A37 Silent p.T252T 0.13 TCGA-69-A59K-01 8 25708217 25708217 G A EBF2 Missense_Mutation p.S530F 0.15 tolerated_low_confidence(0.05) probably_damaging(0.962) TCGA-69-A59K-01 8 28196801 28196801 A T PNOC Missense_Mutation p.K124M 0.09 deleterious(0) probably_damaging(0.999) TCGA-69-A59K-01 8 3474314 3474314 G T CSMD1 Missense_Mutation p.Q339K 0.33 benign(0.062) TCGA-69-A59K-01 8 35542219 35542219 T A UNC5D Missense_Mutation p.C291S 0.19 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 8 37793267 37793267 C T GOT1L1 Missense_Mutation p.R295H 0.10 deleterious(0.02) probably_damaging(1) TCGA-69-A59K-01 8 41805339 41805339 T A KAT6A Missense_Mutation p.E611V 0.11 probably_damaging(0.911) TCGA-69-A59K-01 8 54147529 54147529 C T OPRK1 Missense_Mutation p.V134I 0.12 tolerated(0.14) benign(0.015) TCGA-69-A59K-01 8 55539198 55539198 G T RP1 Missense_Mutation p.W919L 0.14 deleterious(0) probably_damaging(0.998) TCGA-69-A59K-01 8 6357394 6357394 G T MCPH1 Missense_Mutation p.G720C 0.29 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 8 75227664 75227664 C A JPH1 Missense_Mutation p.G191C 0.26 deleterious(0) probably_damaging(0.999) TCGA-69-A59K-01 8 88885102 88885102 C A DCAF4L2 Silent p.V366V 0.19 TCGA-69-A59K-01 8 95158285 95158285 G - CDH17 Frame_Shift_Del p.L680Sfs*64 0.19 TCGA-69-A59K-01 8 95172198 95172198 C T CDH17 Splice_Site p.X517_splice 0.22 TCGA-69-A59K-01 8 97269310 97269310 G A MTERFD1 Nonsense_Mutation p.Q123* 0.23 TCGA-69-A59K-01 9 107267410 107267410 C A OR13F1 Silent p.I289I 0.35 TCGA-69-A59K-01 9 107331901 107331901 T G OR13C8 Silent p.T151T 0.32 TCGA-69-A59K-01 9 120053651 120053651 G T ASTN2 Nonsense_Mutation p.S195* 0.37 TCGA-69-A59K-01 9 120475461 120475461 C T TLR4 Missense_Mutation p.S352F 0.27 tolerated(0.18) benign(0.021) TCGA-69-A59K-01 9 123880664 123880664 G A CNTRL Missense_Mutation p.S499N 0.15 benign(0.021) TCGA-69-A59K-01 9 125143731 125143731 C A PTGS1 Missense_Mutation p.T193N 0.41 deleterious(0) possibly_damaging(0.685) TCGA-69-A59K-01 9 130586704 130586704 G T ENG Missense_Mutation p.P338H 0.42 deleterious(0) probably_damaging(0.999) TCGA-69-A59K-01 9 131356476 131356476 G T SPTAN1 Missense_Mutation p.G1080C 0.45 deleterious(0) probably_damaging(0.998) TCGA-69-A59K-01 9 139702136 139702136 G T CCDC183 Missense_Mutation p.K533N 0.26 deleterious(0.02) unknown(0) TCGA-69-A59K-01 9 16552758 16552758 C A BNC2 Missense_Mutation p.D147Y 0.43 deleterious(0.01) probably_damaging(0.956) TCGA-69-A59K-01 9 173325 173325 C A CBWD1 Nonsense_Mutation p.E95* 0.16 TCGA-69-A59K-01 9 19786456 19786456 G T SLC24A2 Missense_Mutation p.L137M 0.41 deleterious(0) probably_damaging(0.993) TCGA-69-A59K-01 9 21384734 21384734 G A IFNA2 3'UTR 0.08 TCGA-69-A59K-01 9 23704925 23704925 G A ELAVL2 Nonsense_Mutation p.Q160* 0.39 TCGA-69-A59K-01 9 32635154 32635154 C A TAF1L Missense_Mutation p.D142Y 0.33 tolerated(0.16) probably_damaging(0.999) TCGA-69-A59K-01 9 33387000 33387000 T A AQP7 Missense_Mutation p.T79S 0.07 deleterious(0) possibly_damaging(0.902) TCGA-69-A59K-01 9 34497158 34497158 C A DNAI1 Silent p.R288R 0.19 TCGA-69-A59K-01 9 35095117 35095117 G A PIGO Missense_Mutation p.A149V 0.13 tolerated(1) benign(0.005) TCGA-69-A59K-01 9 39171478 39171478 C T CNTNAP3 Silent p.L407L 0.08 TCGA-69-A59K-01 9 43627815 43627815 C A SPATA31A6 Missense_Mutation p.C291F 0.19 deleterious(0.01) possibly_damaging(0.509) TCGA-69-A59K-01 9 91961840 91961840 G C SECISBP2 Missense_Mutation p.E493D 0.47 tolerated(0.22) benign(0.005) TCGA-69-A59K-01 X 100364529 100364529 G T CENPI Silent p.V144V 0.14 TCGA-69-A59K-01 X 10062251 10062251 G T WWC3 Missense_Mutation p.G196V 0.21 tolerated(0.06) benign(0.043) TCGA-69-A59K-01 X 100912146 100912146 G T ARMCX2 Silent p.P143P 0.10 TCGA-69-A59K-01 X 10423042 10423042 C A MID1 Missense_Mutation p.R508L 0.22 deleterious(0.01) probably_damaging(0.961) TCGA-69-A59K-01 X 106797698 106797698 T C FRMPD3 Silent p.R275R 0.11 TCGA-69-A59K-01 X 106840727 106840727 C T FRMPD3 Nonsense_Mutation p.Q573* 0.07 TCGA-69-A59K-01 X 107821201 107821201 G T COL4A5 Missense_Mutation p.G210V 0.24 unknown(0) TCGA-69-A59K-01 X 110489773 110489773 A G CAPN6 3'UTR 0.30 TCGA-69-A59K-01 X 114242498 114242498 C T IL13RA2 Missense_Mutation p.E332K 0.18 tolerated(0.89) benign(0.001) TCGA-69-A59K-01 X 117043547 117043547 C A KLHL13 Missense_Mutation p.M364I 0.28 tolerated(0.08) benign(0.001) TCGA-69-A59K-01 X 117719076 117719076 A T DOCK11 Missense_Mutation p.L597F 0.16 tolerated(0.7) benign(0.001) TCGA-69-A59K-01 X 119211092 119211092 C A RHOXF2B Missense_Mutation p.G81C 0.19 tolerated(0.19) probably_damaging(0.976) TCGA-69-A59K-01 X 122757776 122757776 T G THOC2 Missense_Mutation p.N1122T 0.12 deleterious(0) probably_damaging(0.999) TCGA-69-A59K-01 X 123217270 123217270 G T STAG2 Splice_Site p.X975_splice 0.12 TCGA-69-A59K-01 X 131188889 131188889 G C MST4 Missense_Mutation p.K91N 0.42 deleterious(0.01) probably_damaging(0.944) TCGA-69-A59K-01 X 131202311 131202311 C A MST4 Missense_Mutation p.D133E 0.15 tolerated(0.46) benign(0.163) TCGA-69-A59K-01 X 131212380 131212380 G T FRMD7 Silent p.A555A 0.16 TCGA-69-A59K-01 X 134426223 134426224 CT ATA ZNF75D Frame_Shift_Ins p.Q196Lfs*5 0.13 TCGA-69-A59K-01 X 134989090 134989090 A C SAGE1 Missense_Mutation p.T248P 0.34 deleterious(0) benign(0.124) TCGA-69-A59K-01 X 135487937 135487937 G T GPR112 Missense_Mutation p.C2914F 0.19 deleterious(0.02) benign(0.312) TCGA-69-A59K-01 X 13681008 13681008 C G TCEANC Missense_Mutation p.D157E 0.24 tolerated(0.25) benign(0.016) TCGA-69-A59K-01 X 139047624 139047624 G T CXorf66 Missense_Mutation p.S11Y 0.10 tolerated(0.07) probably_damaging(0.919) TCGA-69-A59K-01 X 140985237 140985237 G T MAGEC3 Nonsense_Mutation p.E565* 0.14 TCGA-69-A59K-01 X 142803958 142803958 G T SPANXN2 5'UTR 0.43 TCGA-69-A59K-01 X 149671598 149671598 C A MAMLD1 Intron 0.12 TCGA-69-A59K-01 X 149919242 149919242 C T MTMR1 Missense_Mutation p.T528I 0.35 deleterious(0.04) benign(0.421) TCGA-69-A59K-01 X 150911608 150911608 G T CNGA2 Silent p.L211L 0.32 TCGA-69-A59K-01 X 152719880 152719880 C T HAUS7 Nonsense_Mutation p.W349* 0.15 TCGA-69-A59K-01 X 153591030 153591030 C A FLNA Missense_Mutation p.Q801H 0.12 deleterious(0.04) probably_damaging(0.926) TCGA-69-A59K-01 X 153626736 153626736 G T RPL10 Splice_Site 0.14 TCGA-69-A59K-01 X 153666923 153666923 G T GDI1 Missense_Mutation p.D34Y 0.13 deleterious(0) probably_damaging(0.995) TCGA-69-A59K-01 X 153880596 153880596 T C CTAG2 Silent p.G193G 0.16 TCGA-69-A59K-01 X 153908478 153908490 CCACGTAAGGGCA - GAB3 Frame_Shift_Del p.A523Qfs*6 0.13 TCGA-69-A59K-01 X 22065263 22065263 C A PHEX Missense_Mutation p.P95T 0.19 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 X 23397899 23397899 G A PTCHD1 Silent p.K181K 0.13 TCGA-69-A59K-01 X 24752001 24752001 T A POLA1 Intron 0.15 TCGA-69-A59K-01 X 27999524 27999524 G T DCAF8L1 5'UTR 0.25 TCGA-69-A59K-01 X 28807530 28807530 A - IL1RAPL1 Frame_Shift_Del p.R25Efs*50 0.19 TCGA-69-A59K-01 X 30261171 30261171 G A MAGEB4 Missense_Mutation p.A307T 0.09 tolerated(0.05) possibly_damaging(0.742) TCGA-69-A59K-01 X 32235129 32235129 C A DMD Missense_Mutation p.K2114N 0.11 possibly_damaging(0.607) TCGA-69-A59K-01 X 33038315 33038315 C A DMD Nonsense_Mutation p.E12* 0.19 TCGA-69-A59K-01 X 34961846 34961846 C G FAM47B Missense_Mutation p.P300A 0.45 tolerated(0.05) benign(0.078) TCGA-69-A59K-01 X 37312947 37312947 C A PRRG1 3'UTR 0.15 TCGA-69-A59K-01 X 41043333 41043333 C A USP9X Missense_Mutation p.D1077E 0.11 tolerated(1) benign(0.001) TCGA-69-A59K-01 X 41556045 41556045 A G GPR34 3'UTR 0.12 TCGA-69-A59K-01 X 47486200 47486200 G A CFP Silent p.H304H 0.12 TCGA-69-A59K-01 X 48368223 48368223 C A PORCN Missense_Mutation p.S5R 0.13 deleterious(0) possibly_damaging(0.736) TCGA-69-A59K-01 X 48399815 48399815 C A TBC1D25 Missense_Mutation p.A73D 0.14 deleterious(0) possibly_damaging(0.731) TCGA-69-A59K-01 X 48545178 48545178 G T WAS Missense_Mutation p.V190L 0.12 tolerated(0.39) benign(0.003) TCGA-69-A59K-01 X 49067840 49067840 C G CACNA1F Missense_Mutation p.C1412S 0.10 deleterious(0) benign(0.379) TCGA-69-A59K-01 X 50094323 50094323 C T CCNB3 Silent p.F1348F 0.28 TCGA-69-A59K-01 X 50376458 50376458 C A SHROOM4 Missense_Mutation p.C872F 0.11 tolerated(0.46) benign(0.157) TCGA-69-A59K-01 X 53423454 53423454 C T SMC1A Silent p.S882S 0.18 TCGA-69-A59K-01 X 54492128 54492128 C T FGD1 Splice_Site p.X499_splice 0.28 TCGA-69-A59K-01 X 55041222 55041222 G T ALAS2 Silent p.G465G 0.25 TCGA-69-A59K-01 X 56291997 56291997 A T KLF8 Missense_Mutation p.I156F 0.24 tolerated(0.28) benign(0.025) TCGA-69-A59K-01 X 63445164 63445164 G A ASB12 Missense_Mutation p.R123C 0.23 deleterious(0.03) probably_damaging(0.991) TCGA-69-A59K-01 X 67283997 67283997 C A OPHN1 Silent p.P619P 0.25 TCGA-69-A59K-01 X 69283069 69283069 C A OTUD6A Missense_Mutation p.P232H 0.15 deleterious(0) probably_damaging(0.999) TCGA-69-A59K-01 X 70389658 70389658 C A NLGN3 Missense_Mutation p.P753Q 0.20 tolerated_low_confidence(0.06) benign(0.001) TCGA-69-A59K-01 X 70603920 70603920 G T TAF1 Nonsense_Mutation p.E706* 0.15 TCGA-69-A59K-01 X 70612819 70612819 G A TAF1 Missense_Mutation p.R1029H 0.13 deleterious(0.02) benign(0.07) TCGA-69-A59K-01 X 70617292 70617292 G C TAF1 Missense_Mutation p.R1219P 0.10 deleterious(0) probably_damaging(1) TCGA-69-A59K-01 X 70764462 70764462 C T OGT Silent p.L170L 0.09 TCGA-69-A59K-01 X 73041465 73041465 C A XIST RNA 0.29 TCGA-69-A59K-01 X 73071147 73071147 C A XIST RNA 0.34 TCGA-69-A59K-01 X 82763370 82763370 G T POU3F4 Missense_Mutation p.S13I 0.10 tolerated_low_confidence(0.07) benign(0.183) TCGA-69-A59K-01 X 84347563 84347563 G A SATL1 Silent p.S627S 0.08 TCGA-69-A59K-01 X 85994885 85994885 G A DACH2 Missense_Mutation p.E414K 0.18 tolerated(0.07) benign(0.06) TCGA-69-A59K-01 X 91066235 91066235 G T PCDH11X Splice_Site 0.30 TCGA-71-6725-01 10 11985140 11985140 C T UPF2 Missense_Mutation p.G1068R 0.12 tolerated(0.63) benign(0.001) TCGA-71-6725-01 10 129905598 129905598 G A MKI67 Silent p.D1502D 0.27 TCGA-71-6725-01 10 134942303 134942303 G A GPR123 Missense_Mutation p.R324H 0.19 deleterious(0) possibly_damaging(0.87) TCGA-71-6725-01 10 49482622 49482622 C T FRMPD2 5'UTR 0.21 TCGA-71-6725-01 11 118770825 118770825 T C BCL9L Silent p.L1069L 0.25 TCGA-71-6725-01 11 55340039 55340039 G T OR4C16 Missense_Mutation p.A146S 0.25 tolerated(0.14) probably_damaging(0.976) TCGA-71-6725-01 11 62397858 62397858 G A GANAB Silent p.C524C 0.06 TCGA-71-6725-01 13 25169954 25169954 T A RP11-556N21.1 RNA 0.45 TCGA-71-6725-01 14 21852129 21852129 A C SUPT16H 5'UTR 0.45 TCGA-71-6725-01 14 23870001 23870001 G A MYH6 Missense_Mutation p.R443C 0.12 deleterious(0) probably_damaging(0.961) TCGA-71-6725-01 14 33292074 33292074 G A AKAP6 Silent p.A1685A 0.24 TCGA-71-6725-01 14 55510343 55510343 C T SOCS4 Missense_Mutation p.P195L 0.19 tolerated(0.06) benign(0.014) TCGA-71-6725-01 14 75017917 75017917 C T LTBP2 Silent p.P512P 0.28 TCGA-71-6725-01 15 25221477 25221477 C T SNRPN Missense_Mutation p.R61C 0.20 tolerated(0.06) benign(0.189) TCGA-71-6725-01 15 42695961 42695961 G A CAPN3 Missense_Mutation p.V590M 0.05 tolerated(0.06) possibly_damaging(0.473) TCGA-71-6725-01 15 43893702 43893702 A G STRC Silent p.L1531L 0.12 TCGA-71-6725-01 15 43893725 43893725 G C STRC Missense_Mutation p.R1524G 0.07 deleterious(0.02) possibly_damaging(0.508) TCGA-71-6725-01 15 45424180 45424180 G A DUOX1 Missense_Mutation p.A6T 0.03 tolerated_low_confidence(0.36) benign(0.011) TCGA-71-6725-01 15 63618490 63618490 G A CA12 Silent p.H353H 0.21 TCGA-71-6725-01 17 15620341 15620341 G C ZNF286A Missense_Mutation p.E435Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-71-6725-01 17 48696099 48696099 G A CACNA1G Silent p.T1837T 0.14 TCGA-71-6725-01 17 50212286 50212286 C A CA10 Intron 0.14 TCGA-71-6725-01 17 6364731 6364731 G A PITPNM3 Missense_Mutation p.R818W 0.32 deleterious(0) probably_damaging(0.993) TCGA-71-6725-01 18 21743135 21743135 T C OSBPL1A 3'UTR 0.10 TCGA-71-6725-01 19 19905881 19905881 A G ZNF506 Missense_Mutation p.L272P 0.05 deleterious(0) probably_damaging(0.999) TCGA-71-6725-01 19 38900650 38900650 G A RASGRP4 3'UTR 0.34 TCGA-71-6725-01 19 51361824 51361824 C T KLK3 Silent p.R201R 0.54 TCGA-71-6725-01 19 5699098 5699098 C A LONP1 Missense_Mutation p.R542L 0.24 deleterious(0) probably_damaging(1) TCGA-71-6725-01 1 120056843 120056843 C T HSD3B1 Missense_Mutation p.H233Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-71-6725-01 1 156670345 156670345 C T CRABP2 Missense_Mutation p.E119K 0.17 tolerated(0.1) benign(0.025) TCGA-71-6725-01 1 167095768 167095768 G A DUSP27 Missense_Mutation p.R467H 0.13 deleterious(0.02) benign(0.035) TCGA-71-6725-01 1 167798655 167798655 C G ADCY10 Missense_Mutation p.K1200N 0.14 deleterious(0.01) possibly_damaging(0.469) TCGA-71-6725-01 1 169510388 169510388 G T F5 Missense_Mutation p.P1314T 0.16 deleterious_low_confidence(0.01) benign(0.178) TCGA-71-6725-01 1 201751334 201751334 G A NAV1 Missense_Mutation p.G565D 0.15 deleterious(0.01) benign(0.138) TCGA-71-6725-01 1 204128652 204128652 G A REN Silent p.A188A 0.12 TCGA-71-6725-01 1 204419113 204419113 G A PIK3C2B Missense_Mutation p.P700L 0.54 deleterious(0) probably_damaging(1) TCGA-71-6725-01 1 53072531 53072531 G A GPX7 Missense_Mutation p.R105H 0.05 deleterious(0) probably_damaging(0.998) TCGA-71-6725-01 20 33876276 33876276 G A FAM83C Missense_Mutation p.A265V 0.32 tolerated(0.1) benign(0.023) TCGA-71-6725-01 20 36147457 36147457 C T BLCAP Silent p.R40R 0.15 TCGA-71-6725-01 20 52609134 52609134 C T BCAS1 Intron 0.10 TCGA-71-6725-01 21 30378734 30378734 G T RWDD2B 3'UTR 0.24 TCGA-71-6725-01 22 37499438 37499438 G A TMPRSS6 Missense_Mutation p.P16L 0.23 deleterious_low_confidence(0.01) benign(0.327) TCGA-71-6725-01 2 122139812 122139812 T C CLASP1 Missense_Mutation p.K1155E 0.25 tolerated(0.78) benign(0.027) TCGA-71-6725-01 2 27281274 27281274 C T AGBL5 Nonsense_Mutation p.R560* 0.33 TCGA-71-6725-01 2 55555500 55555501 - T CCDC88A Frame_Shift_Ins p.I975Nfs*15 0.32 TCGA-71-6725-01 3 152553609 152553609 C T P2RY1 Missense_Mutation p.T13M 0.11 deleterious(0) probably_damaging(0.985) TCGA-71-6725-01 3 170078422 170078422 G A SKIL Silent p.L101L 0.22 TCGA-71-6725-01 3 184103862 184103862 C T CHRD Missense_Mutation p.P616L 0.05 tolerated(0.12) probably_damaging(0.976) TCGA-71-6725-01 3 47859533 47859533 G A DHX30 Missense_Mutation p.R17H 0.24 deleterious_low_confidence(0) possibly_damaging(0.522) TCGA-71-6725-01 3 62254711 62254711 G A PTPRG Missense_Mutation p.R959Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-71-6725-01 4 103498166 103498166 G C NFKB1 Missense_Mutation p.A181P 0.29 tolerated(0.2) benign(0.001) TCGA-71-6725-01 4 174213396 174213396 T C GALNT7 Missense_Mutation p.I242T 0.28 deleterious(0) probably_damaging(0.955) TCGA-71-6725-01 5 1083938 1083938 C T SLC12A7 Missense_Mutation p.A351T 0.26 tolerated(1) benign(0) TCGA-71-6725-01 5 140625383 140625383 G T PCDHB15 Silent p.L79L 0.30 TCGA-71-6725-01 5 140798770 140798770 C T PCDHGB7 Silent p.N448N 0.33 TCGA-71-6725-01 5 145649137 145649137 C A RBM27 Missense_Mutation p.T894K 0.61 deleterious(0) benign(0.022) TCGA-71-6725-01 5 38885486 38885486 A G OSMR Missense_Mutation p.T247A 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-71-6725-01 5 54649009 54649009 C T SKIV2L2 Missense_Mutation p.T482M 0.06 deleterious(0) probably_damaging(0.999) TCGA-71-6725-01 5 96253168 96253168 G A ERAP2 Silent p.V914V 0.34 TCGA-71-6725-01 6 38919259 38919259 C A DNAH8 Silent p.T3921T 0.03 TCGA-71-6725-01 6 70637868 70637868 G A COL19A1 Missense_Mutation p.A112T 0.35 tolerated(1) unknown(0) TCGA-71-6725-01 7 135048808 135048808 A C CNOT4 Missense_Mutation p.S546R 0.04 deleterious_low_confidence(0.02) benign(0.025) TCGA-71-6725-01 7 140154416 140154416 C T MKRN1 Missense_Mutation p.M450I 0.20 tolerated(0.33) possibly_damaging(0.471) TCGA-71-6725-01 7 30639610 30639610 G A GARS Missense_Mutation p.M124I 0.13 deleterious(0.04) benign(0.267) TCGA-71-6725-01 7 72657788 72657788 A G GTF2IRD2P1 RNA 0.16 TCGA-71-6725-01 8 100866351 100866351 C T VPS13B Silent p.L3603L 0.56 TCGA-71-6725-01 8 30464636 30464636 C T GTF2E2 Missense_Mutation p.R194H 0.20 deleterious(0.03) probably_damaging(0.978) TCGA-71-6725-01 8 56910924 56910924 A G LYN Missense_Mutation p.Y357C 0.05 deleterious(0.02) probably_damaging(0.962) TCGA-71-6725-01 9 21334730 21334730 A G KLHL9 Silent p.L43L 0.45 TCGA-71-6725-01 9 3247924 3247924 G A RFX3 Intron 0.08 TCGA-71-6725-01 X 132439841 132439841 C T GPC4 Missense_Mutation p.E372K 0.08 tolerated(0.06) benign(0.048) TCGA-71-6725-01 X 48791832 48791832 C A OTUD5 Missense_Mutation p.V327F 0.05 deleterious(0.01) probably_damaging(0.969) TCGA-71-6725-01 X 70613945 70613945 A G TAF1 Missense_Mutation p.T1106A 0.08 deleterious(0.01) probably_damaging(0.962) TCGA-71-6725-01 X 84634283 84634283 C T POF1B Missense_Mutation p.M59I 0.07 tolerated_low_confidence(0.11) benign(0.009) TCGA-71-8520-01 10 104629891 104629892 - T AS3MT Frame_Shift_Ins p.C32Lfs*36 0.08 TCGA-71-8520-01 10 106927098 106927098 G A SORCS3 Missense_Mutation p.R631K 0.32 tolerated(0.7) benign(0.026) TCGA-71-8520-01 10 50960245 50960245 C T OGDHL Silent p.P176P 0.37 TCGA-71-8520-01 10 72494944 72494944 G A ADAMTS14 Missense_Mutation p.D461N 0.09 deleterious(0.05) probably_damaging(0.992) TCGA-71-8520-01 11 117651234 117651234 C T DSCAML1 Missense_Mutation p.R173Q 0.14 tolerated(0.06) probably_damaging(0.999) TCGA-71-8520-01 11 118917347 118917347 C A HYOU1 Missense_Mutation p.K921N 0.32 tolerated(0.14) benign(0.003) TCGA-71-8520-01 11 124747320 124747320 G A ROBO3 Intron 0.38 TCGA-71-8520-01 11 1269189 1269189 C T MUC5B Silent p.L3693L 0.32 TCGA-71-8520-01 11 17809803 17809803 C A SERGEF Silent p.L402L 0.27 TCGA-71-8520-01 11 24998206 24998206 G C LUZP2 Missense_Mutation p.D198H 0.14 deleterious(0) probably_damaging(0.971) TCGA-71-8520-01 11 5686301 5686301 C A TRIM5 Missense_Mutation p.G407V 0.24 tolerated(0.12) benign(0.148) TCGA-71-8520-01 11 60059735 60059735 G T MS4A4A Nonsense_Mutation p.E27* 0.23 TCGA-71-8520-01 11 86131094 86131094 C T CCDC81 Missense_Mutation p.R606W 0.34 deleterious(0) probably_damaging(0.999) TCGA-71-8520-01 12 100813826 100813826 G T SLC17A8 Missense_Mutation p.Q553H 0.17 tolerated(0.09) benign(0.005) TCGA-71-8520-01 12 113716624 113716624 G A TPCN1 Silent p.A499A 0.19 TCGA-71-8520-01 12 124831160 124831160 G A NCOR2 Missense_Mutation p.P1437S 0.29 probably_damaging(0.997) TCGA-71-8520-01 12 130906998 130906998 C T RIMBP2 Missense_Mutation p.D824N 0.08 deleterious(0.02) possibly_damaging(0.612) TCGA-71-8520-01 12 13906305 13906305 C T GRIN2B Missense_Mutation p.S319N 0.17 tolerated(0.22) benign(0.268) TCGA-71-8520-01 12 21644597 21644597 G A RECQL Nonsense_Mutation p.Q24* 0.20 TCGA-71-8520-01 12 22837945 22837945 G A ETNK1 3'UTR 0.35 TCGA-71-8520-01 12 51868921 51868922 - T SLC4A8 Frame_Shift_Ins p.T704Hfs*13 0.35 TCGA-71-8520-01 12 79837926 79837926 C T SYT1 Silent p.N334N 0.04 TCGA-71-8520-01 12 96429162 96429162 G C LTA4H Missense_Mutation p.Q46E 0.26 tolerated(0.87) benign(0.002) TCGA-71-8520-01 14 20781943 20781943 G C CCNB1IP1 Silent p.L105L 0.12 TCGA-71-8520-01 14 21795873 21795873 C T RPGRIP1 Silent p.S934S 0.12 TCGA-71-8520-01 14 47351350 47351350 A T MDGA2 Nonsense_Mutation p.Y771* 0.36 TCGA-71-8520-01 15 41988759 41988759 G T MGA Missense_Mutation p.E517D 0.22 tolerated(0.73) benign(0.001) TCGA-71-8520-01 15 44952723 44952723 C A SPG11 Nonsense_Mutation p.E117* 0.14 TCGA-71-8520-01 16 2732724 2732724 C G KCTD5 Missense_Mutation p.R59G 0.13 deleterious(0) probably_damaging(0.99) TCGA-71-8520-01 16 29816492 29816492 G A KIF22 Silent p.L649L 0.15 TCGA-71-8520-01 16 56918054 56918054 C A SLC12A3 Missense_Mutation p.A588E 0.08 deleterious(0) probably_damaging(0.971) TCGA-71-8520-01 16 84883030 84883030 C G CRISPLD2 Missense_Mutation p.D133E 0.20 tolerated(0.08) probably_damaging(1) TCGA-71-8520-01 16 8906896 8906896 A G PMM2 Missense_Mutation p.Y191C 0.11 deleterious(0.02) probably_damaging(0.996) TCGA-71-8520-01 16 9858337 9858337 G A GRIN2A Missense_Mutation p.R1022C 0.13 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-71-8520-01 17 17997126 17997126 G A DRG2 Splice_Site p.X22_splice 0.19 TCGA-71-8520-01 17 36064925 36064925 T C HNF1B Silent p.Q446Q 0.18 TCGA-71-8520-01 17 43350961 43350966 GAGCAC - MAP3K14 RNA 0.34 TCGA-71-8520-01 17 46990242 46990242 G T UBE2Z Missense_Mutation p.G146V 0.12 deleterious(0.01) probably_damaging(1) TCGA-71-8520-01 17 4907897 4907897 A T KIF1C Missense_Mutation p.S326C 0.39 deleterious(0) possibly_damaging(0.872) TCGA-71-8520-01 17 56350796 56350796 A G MPO Missense_Mutation p.S534P 0.11 tolerated(0.47) benign(0.146) TCGA-71-8520-01 17 57733363 57733363 T G CLTC Missense_Mutation p.I315R 0.22 deleterious(0) probably_damaging(0.988) TCGA-71-8520-01 17 62552036 62552036 G A SMURF2 Silent p.F504F 0.14 TCGA-71-8520-01 17 7578537 7578537 G - TP53 Frame_Shift_Del p.N131Kfs*39 0.43 TCGA-71-8520-01 17 79207264 79207264 C G ENTHD2 Missense_Mutation p.G165A 0.24 deleterious(0) benign(0.056) TCGA-71-8520-01 17 8791808 8791808 G C PIK3R5 Missense_Mutation p.S432R 0.40 tolerated(0.09) probably_damaging(0.918) TCGA-71-8520-01 19 12867052 12867052 C T BEST2 Missense_Mutation p.A349V 0.11 tolerated(0.26) benign(0.14) TCGA-71-8520-01 19 36357373 36357373 G A KIRREL2 Silent p.P702P 0.19 TCGA-71-8520-01 19 37733641 37733641 G C ZNF383 Missense_Mutation p.R168T 0.12 deleterious(0) benign(0.119) TCGA-71-8520-01 19 38990455 38990455 G A RYR1 Missense_Mutation p.R2403H 0.35 benign(0.256) TCGA-71-8520-01 19 4216862 4216862 G A ANKRD24 Missense_Mutation p.D569N 0.13 tolerated_low_confidence(0.49) benign(0.01) TCGA-71-8520-01 19 52003419 52003419 C - SIGLEC12 Frame_Shift_Del p.G188Dfs*46 0.08 TCGA-71-8520-01 19 55341866 55341866 C T KIR3DL1 3'UTR 0.29 TCGA-71-8520-01 19 56156034 56156034 C T ZNF581 Missense_Mutation p.P33S 0.16 tolerated(0.13) probably_damaging(0.994) TCGA-71-8520-01 19 757466 757466 G A MISP Missense_Mutation p.G174S 0.25 tolerated(0.26) benign(0.098) TCGA-71-8520-01 19 9011470 9011470 A C MUC16 Silent p.T12921T 0.13 TCGA-71-8520-01 1 11766744 11766744 G T DRAXIN Missense_Mutation p.R143S 0.23 tolerated(0.1) benign(0.057) TCGA-71-8520-01 1 152193195 152193195 G A HRNR Missense_Mutation p.R304C 0.24 unknown(0) TCGA-71-8520-01 1 210977500 210977500 A G KCNH1 Missense_Mutation p.Y491H 0.23 deleterious(0.02) probably_damaging(0.993) TCGA-71-8520-01 1 237755088 237755088 A G RYR2 Missense_Mutation p.R1404G 0.13 benign(0) TCGA-71-8520-01 1 240255893 240255893 G T FMN2 Missense_Mutation p.D162Y 0.21 unknown(0) TCGA-71-8520-01 1 244773602 244773602 C A C1orf101 Missense_Mutation p.P822T 0.13 tolerated(0.07) possibly_damaging(0.768) TCGA-71-8520-01 1 27434250 27434250 C T SLC9A1 Missense_Mutation p.E391K 0.38 deleterious(0) probably_damaging(0.982) TCGA-71-8520-01 1 85555813 85555813 A G WDR63 Missense_Mutation p.N252S 0.67 deleterious(0.02) probably_damaging(0.94) TCGA-71-8520-01 1 92941661 92941661 G A GFI1 Silent p.C398C 0.78 TCGA-71-8520-01 20 47850187 47850187 G T DDX27 Missense_Mutation p.R436L 0.28 deleterious(0) probably_damaging(0.975) TCGA-71-8520-01 21 39762931 39762931 C T ERG Missense_Mutation p.R309H 0.20 deleterious(0) benign(0.223) TCGA-71-8520-01 21 47549223 47549223 G A COL6A2 Intron 0.12 TCGA-71-8520-01 22 46657300 46657300 A G PKDREJ Silent p.A640A 0.09 TCGA-71-8520-01 22 50662847 50662847 G A TUBGCP6 Missense_Mutation p.R690W 0.12 deleterious(0) probably_damaging(0.993) TCGA-71-8520-01 2 108453121 108453121 A G RGPD4 Missense_Mutation p.K46E 0.33 deleterious(0.01) possibly_damaging(0.636) TCGA-71-8520-01 2 109086437 109086437 C G GCC2 Missense_Mutation p.Q218E 0.13 tolerated(1) benign(0.002) TCGA-71-8520-01 2 211053575 211053575 G C ACADL 3'UTR 0.29 TCGA-71-8520-01 2 240900475 240900475 G A NDUFA10 3'UTR 0.17 TCGA-71-8520-01 2 32664726 32664726 C A BIRC6 Nonsense_Mutation p.S1261* 0.31 TCGA-71-8520-01 2 3743923 3743923 G A ALLC Silent p.R242R 0.20 TCGA-71-8520-01 2 46611667 46611667 C T EPAS1 Silent p.L827L 0.18 TCGA-71-8520-01 2 71043645 71043645 C T CLEC4F Missense_Mutation p.E290K 0.43 tolerated(0.31) benign(0.079) TCGA-71-8520-01 2 73717414 73717414 G A ALMS1 Missense_Mutation p.M2775I 0.14 benign(0.007) TCGA-71-8520-01 2 74742767 74742767 C G TLX2 Silent p.L136L 0.16 TCGA-71-8520-01 2 77746454 77746454 G A LRRTM4 Missense_Mutation p.R181W 0.14 deleterious(0) probably_damaging(1) TCGA-71-8520-01 3 119887084 119887084 C T GPR156 Missense_Mutation p.A414T 0.29 deleterious(0.03) benign(0.068) TCGA-71-8520-01 3 127820398 127820411 TTACCTTCACGGCC - RUVBL1 Splice_Site p.X198_splice 0.21 TCGA-71-8520-01 3 21706487 21706487 A G ZNF385D Missense_Mutation p.L19P 0.11 deleterious(0.01) probably_damaging(0.979) TCGA-71-8520-01 3 38743474 38743474 T G SCN10A Missense_Mutation p.T1505P 0.25 tolerated(0.08) possibly_damaging(0.714) TCGA-71-8520-01 3 58519238 58519238 C T ACOX2 Missense_Mutation p.A173T 0.40 tolerated(0.13) benign(0.021) TCGA-71-8520-01 3 64085406 64085406 C T PRICKLE2 Missense_Mutation p.G619E 0.13 tolerated(1) benign(0.051) TCGA-71-8520-01 3 74350907 74350907 T G CNTN3 Silent p.T612T 0.14 TCGA-71-8520-01 4 144922426 144922426 G T GYPB Missense_Mutation p.S16R 0.08 tolerated(0.12) probably_damaging(0.928) TCGA-71-8520-01 4 70512956 70512956 A G UGT2A1 Missense_Mutation p.M136T 0.10 deleterious(0.01) possibly_damaging(0.742) TCGA-71-8520-01 4 85658404 85658404 G A WDFY3 Silent p.H2230H 0.26 TCGA-71-8520-01 4 88732653 88732653 A G IBSP Missense_Mutation p.N182S 0.17 deleterious(0) probably_damaging(0.958) TCGA-71-8520-01 5 140228359 140228359 G T PCDHA9 Missense_Mutation p.E93D 0.14 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-71-8520-01 5 159344024 159344024 C T ADRA1B Missense_Mutation p.P38S 0.16 tolerated(0.11) benign(0.018) TCGA-71-8520-01 5 79747433 79747433 C A ZFYVE16 Missense_Mutation p.P1171H 0.16 deleterious(0) probably_damaging(1) TCGA-71-8520-01 6 160868761 160868761 A C SLC22A3 Silent p.A507A 0.12 TCGA-71-8520-01 6 2678480 2678480 G C MYLK4 Missense_Mutation p.I338M 0.17 deleterious(0) probably_damaging(0.992) TCGA-71-8520-01 6 2678499 2678499 T C MYLK4 Missense_Mutation p.E332G 0.16 deleterious(0) possibly_damaging(0.459) TCGA-71-8520-01 7 141408819 141408819 C A WEE2 Missense_Mutation p.H87Q 0.03 tolerated(0.58) benign(0.003) TCGA-71-8520-01 7 148543653 148543653 C A EZH2 Missense_Mutation p.R52I 0.44 deleterious(0.05) possibly_damaging(0.867) TCGA-71-8520-01 7 55210075 55210075 T G EGFR Missense_Mutation p.L62R 0.49 deleterious(0.01) probably_damaging(0.962) TCGA-71-8520-01 7 55259515 55259515 T G EGFR Missense_Mutation p.L858R 0.53 deleterious(0) probably_damaging(1) TCGA-71-8520-01 7 73927302 73927302 G T GTF2IRD1 Splice_Site p.X89_splice 0.13 TCGA-71-8520-01 8 121295927 121295927 C T COL14A1 Missense_Mutation p.R1293W 0.06 deleterious(0) probably_damaging(0.999) TCGA-71-8520-01 8 125109564 125109564 G T FER1L6 Missense_Mutation p.G1583V 0.16 deleterious(0) probably_damaging(0.915) TCGA-71-8520-01 8 25337499 25337499 A C CDCA2 Silent p.A297A 0.16 TCGA-71-8520-01 9 84606561 84606561 G A SPATA31D1 Silent p.G392G 0.12 TCGA-71-8520-01 9 97873898 97873898 C T FANCC Silent p.E392E 0.24 TCGA-71-8520-01 X 153581719 153581719 C T FLNA Silent p.P1989P 0.04 TCGA-71-8520-01 X 15371243 15371243 C T FIGF Missense_Mutation p.S230N 0.16 tolerated(0.89) benign(0.002) TCGA-71-8520-01 X 41055512 41055512 G A USP9X Missense_Mutation p.R1329H 0.24 deleterious(0) probably_damaging(0.984) TCGA-71-8520-01 X 7811745 7811745 C A VCX Silent p.P103P 0.03 TCGA-73-4658-01 10 102763815 102763815 G T LZTS2 Silent p.S320S 0.11 TCGA-73-4658-01 10 106976816 106976816 G T SORCS3 Missense_Mutation p.Q890H 0.18 deleterious(0) probably_damaging(0.961) TCGA-73-4658-01 10 12940661 12940661 G T CCDC3 Missense_Mutation p.Q190K 0.09 tolerated_low_confidence(0.08) benign(0.159) TCGA-73-4658-01 10 13749050 13749050 G A FRMD4A Missense_Mutation p.H275Y 0.11 deleterious(0.01) benign(0.436) TCGA-73-4658-01 10 17949583 17949583 C G MRC1L1 Missense_Mutation p.S1316C 0.13 possibly_damaging(0.669) TCGA-73-4658-01 10 24722075 24722075 C T KIAA1217 Silent p.Y235Y 0.14 TCGA-73-4658-01 10 323340 323340 C G DIP2C Missense_Mutation p.E1532D 0.11 deleterious(0) probably_damaging(0.956) TCGA-73-4658-01 10 4889810 4889810 G A AKR1E2 3'UTR 0.06 TCGA-73-4658-01 10 49448459 49448459 C T FRMPD2 Missense_Mutation p.G215E 0.09 tolerated(0.82) benign(0.055) TCGA-73-4658-01 10 73577081 73577081 G A PSAP 3'UTR 0.16 TCGA-73-4658-01 10 86131442 86131442 T C CCSER2 Missense_Mutation p.S212P 0.13 tolerated(0.24) benign(0) TCGA-73-4658-01 10 88768270 88768270 G T RP11-96C23.10 3'Flank 0.14 TCGA-73-4658-01 10 89692883 89692883 C T PTEN Missense_Mutation p.H123Y 0.06 deleterious(0) probably_damaging(1) TCGA-73-4658-01 10 94818035 94818035 C T EXOC6 Nonsense_Mutation p.R780* 0.12 TCGA-73-4658-01 10 96012183 96012183 G T PLCE1 Missense_Mutation p.E1069D 0.11 tolerated(0.13) benign(0.012) TCGA-73-4658-01 10 98145914 98145914 C T TLL2 Silent p.P637P 0.06 TCGA-73-4658-01 11 105483079 105483079 C T GRIA4 Silent p.P55P 0.15 TCGA-73-4658-01 11 107676170 107676170 C T SLC35F2 Missense_Mutation p.E216K 0.07 deleterious(0) possibly_damaging(0.876) TCGA-73-4658-01 11 113230118 113230118 G A TTC12 Missense_Mutation p.E494K 0.20 tolerated(0.05) benign(0.126) TCGA-73-4658-01 11 116633907 116633907 T A BUD13 Missense_Mutation p.H133L 0.19 deleterious(0.01) benign(0.341) TCGA-73-4658-01 11 118263480 118263480 G T UBE4A Nonsense_Mutation p.E989* 0.18 TCGA-73-4658-01 11 118359361 118359361 C T KMT2A Silent p.F1455F 0.07 TCGA-73-4658-01 11 125873838 125873838 C T CDON Missense_Mutation p.G662D 0.07 deleterious(0) probably_damaging(1) TCGA-73-4658-01 11 129743903 129743903 G A NFRKB Silent p.L788L 0.09 TCGA-73-4658-01 11 133806002 133806002 G A IGSF9B Missense_Mutation p.P256L 0.15 deleterious(0) probably_damaging(1) TCGA-73-4658-01 11 32635142 32635142 C T CCDC73 Missense_Mutation p.G908S 0.06 tolerated(1) benign(0.016) TCGA-73-4658-01 11 46332651 46332651 C G CREB3L1 Missense_Mutation p.P222A 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-73-4658-01 11 46332680 46332680 C G CREB3L1 Silent p.V231V 0.09 TCGA-73-4658-01 11 55065336 55065336 C T TRIM51HP RNA 0.14 TCGA-73-4658-01 11 59245321 59245321 A G OR4D10 Missense_Mutation p.H140R 0.08 tolerated(0.51) benign(0) TCGA-73-4658-01 11 62363320 62363320 C G MTA2 Missense_Mutation p.M386I 0.14 deleterious(0.01) benign(0.413) TCGA-73-4658-01 11 6260490 6260490 C G CNGA4 Silent p.S18S 0.08 TCGA-73-4658-01 11 64032487 64032487 C G PLCB3 Nonsense_Mutation p.S906* 0.15 TCGA-73-4658-01 11 64366290 64366290 C T SLC22A12 Missense_Mutation p.S322L 0.08 deleterious(0.01) benign(0.109) TCGA-73-4658-01 11 65123941 65123941 G T TIGD3 Missense_Mutation p.R221I 0.08 tolerated(0.07) possibly_damaging(0.462) TCGA-73-4658-01 11 65617697 65617697 C G SNX32 Missense_Mutation p.S110C 0.14 deleterious(0.01) benign(0.003) TCGA-73-4658-01 11 67209218 67209218 A C CORO1B Missense_Mutation p.V147G 0.19 deleterious(0) possibly_damaging(0.864) TCGA-73-4658-01 11 6912807 6912807 A T OR2D2 Nonstop_Mutation p.*309Rext*7 0.08 TCGA-73-4658-01 11 74915502 74915502 T A SLCO2B1 Silent p.V669V 0.23 TCGA-73-4658-01 11 821651 821651 G C PNPLA2 Missense_Mutation p.E71Q 0.09 tolerated(0.11) benign(0.152) TCGA-73-4658-01 11 87847182 87847182 T C RAB38 Missense_Mutation p.S204G 0.11 tolerated(0.26) benign(0) TCGA-73-4658-01 11 89405072 89405072 G T FOLH1B RNA 0.14 TCGA-73-4658-01 11 89405092 89405092 G C FOLH1B RNA 0.12 TCGA-73-4658-01 11 94316682 94316682 G A PIWIL4 Silent p.E194E 0.07 TCGA-73-4658-01 12 109186349 109186349 C G SSH1 Missense_Mutation p.E536Q 0.16 deleterious_low_confidence(0.02) benign(0.303) TCGA-73-4658-01 12 111776136 111776136 C A CUX2 Silent p.S1081S 0.12 TCGA-73-4658-01 12 112528570 112528570 T A NAA25 Silent p.S81S 0.09 TCGA-73-4658-01 12 114377779 114377779 G C RBM19 Missense_Mutation p.L642V 0.06 deleterious(0.03) benign(0.439) TCGA-73-4658-01 12 122862308 122862308 G A CLIP1 Silent p.P95P 0.08 TCGA-73-4658-01 12 13715803 13715803 G A GRIN2B Missense_Mutation p.P1457S 0.07 tolerated(0.35) benign(0.006) TCGA-73-4658-01 12 13906490 13906490 G A GRIN2B Silent p.I257I 0.12 TCGA-73-4658-01 12 21636334 21636334 G A RECQL Nonsense_Mutation p.Q226* 0.09 TCGA-73-4658-01 12 2800305 2800305 G A CACNA1C Silent p.A2167A 0.10 TCGA-73-4658-01 12 2968351 2968351 G A FOXM1 Missense_Mutation p.S620F 0.10 tolerated(0.05) benign(0.019) TCGA-73-4658-01 12 45170870 45170870 C G NELL2 Missense_Mutation p.Q289H 0.08 deleterious(0.03) possibly_damaging(0.595) TCGA-73-4658-01 12 46233223 46233223 T A ARID2 Missense_Mutation p.I481N 0.08 deleterious(0) benign(0.176) TCGA-73-4658-01 12 49997097 49997097 C T FAM186B Missense_Mutation p.A126T 0.10 tolerated(0.15) benign(0.276) TCGA-73-4658-01 12 49997107 49997107 C T FAM186B Silent p.E122E 0.12 TCGA-73-4658-01 12 51634866 51634866 G C DAZAP2 Intron 0.06 TCGA-73-4658-01 12 51636127 51636127 G C DAZAP2 Missense_Mutation p.W105C 0.05 deleterious_low_confidence(0) possibly_damaging(0.629) TCGA-73-4658-01 12 52139710 52139710 G A SCN8A Silent p.K674K 0.09 TCGA-73-4658-01 12 54911422 54911422 G A NCKAP1L Missense_Mutation p.D401N 0.08 deleterious(0) probably_damaging(0.929) TCGA-73-4658-01 12 57600282 57600282 G T LRP1 Missense_Mutation p.A3873S 0.09 possibly_damaging(0.7) TCGA-73-4658-01 12 57868455 57868455 G T ARHGAP9 Missense_Mutation p.S561R 0.13 deleterious(0) probably_damaging(1) TCGA-73-4658-01 12 68647143 68647143 T A IL22 Missense_Mutation p.Q29L 0.11 tolerated(0.09) benign(0.055) TCGA-73-4658-01 12 82752422 82752422 C A METTL25 Missense_Mutation p.F26L 0.06 deleterious(0) probably_damaging(0.993) TCGA-73-4658-01 12 89865459 89865459 G A POC1B Missense_Mutation p.S203L 0.08 deleterious(0) probably_damaging(0.911) TCGA-73-4658-01 13 111118389 111118389 G A COL4A2 Missense_Mutation p.R673K 0.05 benign(0.001) TCGA-73-4658-01 13 113176788 113176788 G A TUBGCP3 Nonsense_Mutation p.Q531* 0.17 TCGA-73-4658-01 13 25073477 25073477 G A PARP4 Nonsense_Mutation p.Q147* 0.09 TCGA-73-4658-01 13 38145512 38145512 G T POSTN Missense_Mutation p.H725N 0.09 deleterious_low_confidence(0.02) benign(0.097) TCGA-73-4658-01 13 52539113 52539113 C A ATP7B Missense_Mutation p.R588S 0.27 tolerated(0.06) benign(0.06) TCGA-73-4658-01 13 67802360 67802360 C A PCDH9 Silent p.G71G 0.20 TCGA-73-4658-01 13 72014681 72014681 C G DACH1 3'UTR 0.12 TCGA-73-4658-01 14 105517991 105517991 G A GPR132 Silent p.L161L 0.11 TCGA-73-4658-01 14 106173709 106173709 G C IGHA1 Missense_Mutation p.S286R 0.07 deleterious(0.01) possibly_damaging(0.736) TCGA-73-4658-01 14 20215671 20215671 T A OR4Q3 Missense_Mutation p.L29I 0.09 tolerated(0.19) benign(0.003) TCGA-73-4658-01 14 21550590 21550590 G T ARHGEF40 Missense_Mutation p.G1147C 0.21 deleterious(0) possibly_damaging(0.778) TCGA-73-4658-01 14 23243287 23243287 G A SLC7A7 Silent p.T428T 0.10 TCGA-73-4658-01 14 42360646 42360646 G T LRFN5 Missense_Mutation p.G527C 0.09 deleterious(0) probably_damaging(1) TCGA-73-4658-01 14 45644916 45644916 C T FANCM Silent p.L987L 0.13 TCGA-73-4658-01 14 59950952 59950952 C A L3HYPDH Missense_Mutation p.G28V 0.21 deleterious(0) probably_damaging(0.933) TCGA-73-4658-01 14 59950953 59950953 C T L3HYPDH Missense_Mutation p.G28S 0.21 deleterious(0.01) possibly_damaging(0.868) TCGA-73-4658-01 14 69695691 69695691 T A EXD2 Silent p.V164V 0.14 TCGA-73-4658-01 14 75469779 75469779 G A EIF2B2 Missense_Mutation p.R29H 0.09 tolerated(0.33) benign(0.015) TCGA-73-4658-01 14 75474434 75474434 G A EIF2B2 Missense_Mutation p.E281K 0.08 tolerated(0.14) benign(0.3) TCGA-73-4658-01 14 81302585 81302585 G A CEP128 Nonsense_Mutation p.Q341* 0.06 TCGA-73-4658-01 14 88892628 88892628 G A SPATA7 Missense_Mutation p.G142E 0.13 tolerated(0.8) benign(0.012) TCGA-73-4658-01 15 24923219 24923219 C A NPAP1 Silent p.P735P 0.06 TCGA-73-4658-01 15 28211876 28211876 C A OCA2 Missense_Mutation p.W532C 0.10 deleterious(0.03) benign(0.139) TCGA-73-4658-01 15 45028843 45028843 C A TRIM69 5'UTR 0.20 TCGA-73-4658-01 15 48062801 48062801 G T SEMA6D Missense_Mutation p.V681L 0.10 tolerated(0.67) benign(0.001) TCGA-73-4658-01 15 50271905 50271905 C A ATP8B4 Nonsense_Mutation p.G315* 0.17 TCGA-73-4658-01 15 56736859 56736859 C T MNS1 Missense_Mutation p.E157K 0.05 tolerated(0.06) probably_damaging(0.917) TCGA-73-4658-01 15 64967177 64967177 C A ZNF609 Silent p.P708P 0.07 TCGA-73-4658-01 15 65684634 65684634 G A IGDCC4 Missense_Mutation p.H654Y 0.08 deleterious(0.01) possibly_damaging(0.53) TCGA-73-4658-01 15 81212542 81212542 T C KIAA1199 Silent p.S635S 0.06 TCGA-73-4658-01 15 89402294 89402294 G C ACAN Missense_Mutation p.E2160Q 0.08 deleterious(0.01) probably_damaging(0.978) TCGA-73-4658-01 15 99459945 99459945 G C IGF1R Missense_Mutation p.E681Q 0.08 tolerated(0.05) possibly_damaging(0.821) TCGA-73-4658-01 16 1270419 1270419 G A CACNA1H Missense_Mutation p.G2163R 0.13 tolerated(0.52) possibly_damaging(0.803) TCGA-73-4658-01 16 1271901 1271901 G T TPSG1 Missense_Mutation p.L285M 0.12 deleterious(0.01) benign(0.045) TCGA-73-4658-01 16 1545475 1545475 C T TELO2 Missense_Mutation p.T155M 0.27 deleterious(0.04) benign(0.029) TCGA-73-4658-01 16 24902295 24902295 C A SLC5A11 Missense_Mutation p.A257D 0.24 deleterious(0) probably_damaging(0.991) TCGA-73-4658-01 16 2812607 2812607 G T SRRM2 Missense_Mutation p.R693L 0.17 unknown(0) TCGA-73-4658-01 16 3024141 3024141 G C PKMYT1 Silent p.L390L 0.21 TCGA-73-4658-01 16 3074358 3074358 C G THOC6 Missense_Mutation p.L11V 0.10 tolerated_low_confidence(0.07) benign(0.012) TCGA-73-4658-01 16 3190770 3190770 G T ZNF213 Missense_Mutation p.V268L 0.13 tolerated(0.38) benign(0.003) TCGA-73-4658-01 16 48209263 48209263 C T ABCC11 Missense_Mutation p.D1202N 0.16 deleterious(0.04) probably_damaging(1) TCGA-73-4658-01 16 48261806 48261806 C T ABCC11 Silent p.P102P 0.05 TCGA-73-4658-01 16 56920945 56920945 G T SLC12A3 Missense_Mutation p.K706N 0.15 deleterious(0) benign(0.082) TCGA-73-4658-01 16 58568128 58568128 C A CNOT1 Missense_Mutation p.V1940F 0.11 deleterious(0) possibly_damaging(0.753) TCGA-73-4658-01 16 68225105 68225105 G T NFATC3 Missense_Mutation p.G845C 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.759) TCGA-73-4658-01 16 71319478 71319478 A G CMTR2 Missense_Mutation p.C116R 0.22 deleterious(0) probably_damaging(0.997) TCGA-73-4658-01 16 76513396 76513396 G T CNTNAP4 Missense_Mutation p.G542C 0.17 deleterious(0) probably_damaging(0.995) TCGA-73-4658-01 16 81183355 81183355 G T PKD1L2 RNA 0.16 TCGA-73-4658-01 16 88876515 88876515 C G APRT Missense_Mutation p.Q121H 0.05 deleterious(0.01) probably_damaging(0.985) TCGA-73-4658-01 16 89758876 89758876 A C CDK10 Missense_Mutation p.Q146P 0.12 deleterious(0) probably_damaging(0.994) TCGA-73-4658-01 16 89985815 89985815 T C MC1R Missense_Mutation p.L50P 0.13 deleterious(0) probably_damaging(0.993) TCGA-73-4658-01 17 10404795 10404795 C A MYH1 Nonsense_Mutation p.E1124* 0.11 TCGA-73-4658-01 17 16705576 16705576 C A CCDC144A 3'UTR 0.12 TCGA-73-4658-01 17 21731097 21731097 T A UBBP4 Silent p.S133S 0.09 TCGA-73-4658-01 17 26817855 26817855 G A SLC13A2 Missense_Mutation p.E218K 0.13 tolerated(0.29) benign(0.009) TCGA-73-4658-01 17 26918831 26918831 G C SPAG5 Missense_Mutation p.S441C 0.08 deleterious(0) probably_damaging(0.999) TCGA-73-4658-01 17 26961560 26961560 G A KIAA0100 Silent p.L1015L 0.10 TCGA-73-4658-01 17 28405416 28405416 G T EFCAB5 Missense_Mutation p.R974M 0.21 deleterious(0) probably_damaging(0.996) TCGA-73-4658-01 17 29559717 29559717 G T NF1 Splice_Site p.X1105_splice 0.35 TCGA-73-4658-01 17 37985700 37985700 G C IKZF3 Missense_Mutation p.H35D 0.09 tolerated(0.11) benign(0.044) TCGA-73-4658-01 17 4337360 4337360 C T SPNS3 Missense_Mutation p.T33M 0.09 tolerated(0.13) benign(0.022) TCGA-73-4658-01 17 46128729 46128729 C G NFE2L1 Silent p.L83L 0.07 TCGA-73-4658-01 17 51901154 51901154 G T KIF2B Missense_Mutation p.D254Y 0.22 deleterious(0) probably_damaging(1) TCGA-73-4658-01 17 56434870 56434870 G A RNF43 Missense_Mutation p.P756L 0.07 tolerated_low_confidence(0.22) benign(0.33) TCGA-73-4658-01 17 59560581 59560581 G A TBX4 Missense_Mutation p.A448T 0.08 tolerated(0.11) benign(0.002) TCGA-73-4658-01 17 6023892 6023892 G T WSCD1 Missense_Mutation p.D547Y 0.07 deleterious(0.01) possibly_damaging(0.722) TCGA-73-4658-01 17 61972786 61972786 G T CSH1 Intron 0.25 TCGA-73-4658-01 17 67079439 67079439 C T ABCA6 Silent p.E1463E 0.12 TCGA-73-4658-01 17 7258657 7258657 G T TMEM95 Missense_Mutation p.C45F 0.10 deleterious(0.04) possibly_damaging(0.506) TCGA-73-4658-01 17 8018293 8018293 A G ALOXE3 Silent p.L305L 0.09 TCGA-73-4658-01 17 9503470 9503470 T A WDR16 Missense_Mutation p.D241E 0.08 tolerated(0.45) benign(0.003) TCGA-73-4658-01 18 14542921 14542921 G T POTEC Missense_Mutation p.S75R 0.06 tolerated_low_confidence(0.16) possibly_damaging(0.451) TCGA-73-4658-01 18 31314308 31314308 G A ASXL3 Silent p.R337R 0.10 TCGA-73-4658-01 18 77474637 77474637 C T CTDP1 Missense_Mutation p.R393W 0.12 deleterious(0.03) benign(0.001) TCGA-73-4658-01 19 10265128 10265128 G C DNMT1 Missense_Mutation p.I620M 0.07 tolerated(0.21) possibly_damaging(0.448) TCGA-73-4658-01 19 11597896 11597896 C T ZNF653 Missense_Mutation p.E417K 0.13 tolerated(0.52) benign(0.052) TCGA-73-4658-01 19 11978433 11978433 G C ZNF439 Missense_Mutation p.K183N 0.09 deleterious(0) benign(0.245) TCGA-73-4658-01 19 15769201 15769201 C T CYP4F3 Missense_Mutation p.P415S 0.07 deleterious(0.01) probably_damaging(0.992) TCGA-73-4658-01 19 17953878 17953878 C T JAK3 Missense_Mutation p.R175Q 0.07 tolerated(0.15) benign(0.002) TCGA-73-4658-01 19 19231844 19231844 C A TMEM161A Missense_Mutation p.R349L 0.12 deleterious(0) probably_damaging(0.95) TCGA-73-4658-01 19 21606273 21606273 G A ZNF493 Missense_Mutation p.G271D 0.07 tolerated(0.09) probably_damaging(0.993) TCGA-73-4658-01 19 22364130 22364130 C G ZNF676 Missense_Mutation p.R130T 0.15 tolerated(0.08) benign(0.004) TCGA-73-4658-01 19 23545212 23545212 G A ZNF91 Missense_Mutation p.S190L 0.07 tolerated(0.2) benign(0.044) TCGA-73-4658-01 19 24309732 24309732 T G ZNF254 Silent p.T310T 0.07 TCGA-73-4658-01 19 334524 334524 C A MIER2 Missense_Mutation p.G40V 0.10 tolerated(0.11) benign(0.007) TCGA-73-4658-01 19 3778291 3778291 G A MATK Missense_Mutation p.R473C 0.11 deleterious(0.01) probably_damaging(0.953) TCGA-73-4658-01 19 43523155 43523155 C A PSG11 Missense_Mutation p.R159M 0.17 tolerated(0.18) probably_damaging(0.951) TCGA-73-4658-01 19 45973886 45973886 G A FOSB Splice_Site p.X43_splice 0.18 TCGA-73-4658-01 19 46032614 46032614 C A OPA3 Silent p.A81A 0.05 TCGA-73-4658-01 19 47823845 47823847 TCG - C5AR1 In_Frame_Del p.S272del 0.10 TCGA-73-4658-01 19 47960842 47960842 C A SLC8A2 Missense_Mutation p.A229S 0.13 deleterious(0.02) benign(0.438) TCGA-73-4658-01 19 49424449 49424449 G A NUCB1 Silent p.L347L 0.09 TCGA-73-4658-01 19 49657641 49657641 G T HRC Nonsense_Mutation p.S285* 0.12 TCGA-73-4658-01 19 50399257 50399257 C A IL4I1 Missense_Mutation p.D45Y 0.16 deleterious(0.02) possibly_damaging(0.73) TCGA-73-4658-01 19 54209588 54209588 G C MIR526A1 RNA 0.10 TCGA-73-4658-01 19 55147116 55147116 C A LILRB1 Intron 0.18 TCGA-73-4658-01 19 56413549 56413549 C A NLRP13 Missense_Mutation p.A881S 0.20 tolerated(0.53) possibly_damaging(0.468) TCGA-73-4658-01 19 56482063 56482063 G A NLRP8 Splice_Site p.X845_splice 0.10 TCGA-73-4658-01 19 57640047 57640047 A T USP29 Missense_Mutation p.I2L 0.14 tolerated(0.13) benign(0.013) TCGA-73-4658-01 19 58849907 58849907 A G ZSCAN22 Missense_Mutation p.S231G 0.08 tolerated(0.34) benign(0) TCGA-73-4658-01 19 9968409 9968409 G A OLFM2 Silent p.L114L 0.15 TCGA-73-4658-01 1 10527261 10527261 C G DFFA Missense_Mutation p.E143Q 0.11 deleterious(0) probably_damaging(0.984) TCGA-73-4658-01 1 10527291 10527291 C - DFFA Frame_Shift_Del p.E133Kfs*91 0.10 TCGA-73-4658-01 1 109242068 109242068 G C PRPF38B Missense_Mutation p.R356T 0.12 deleterious(0.05) unknown(0) TCGA-73-4658-01 1 113238174 113238174 G T MOV10 Missense_Mutation p.R586L 0.10 deleterious(0.01) benign(0.07) TCGA-73-4658-01 1 118596639 118596639 C G SPAG17 Missense_Mutation p.E934Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-73-4658-01 1 12336136 12336136 G A VPS13D Missense_Mutation p.V831M 0.09 probably_damaging(0.965) TCGA-73-4658-01 1 144865913 144865913 G A PDE4DIP Silent p.F1889F 0.03 TCGA-73-4658-01 1 151509762 151509762 C T CGN Silent p.Y1184Y 0.08 TCGA-73-4658-01 1 154300287 154300287 G A ATP8B2 Silent p.L4L 0.06 TCGA-73-4658-01 1 155005224 155005224 C G DCST2 Missense_Mutation p.A154P 0.09 tolerated(0.1) possibly_damaging(0.534) TCGA-73-4658-01 1 155228742 155228742 C T SCAMP3 Missense_Mutation p.R131Q 0.32 tolerated(0.07) benign(0.27) TCGA-73-4658-01 1 155271149 155271149 C A PKLR Missense_Mutation p.R13L 0.31 tolerated_low_confidence(0.68) benign(0) TCGA-73-4658-01 1 155317620 155317620 C T ASH1L Missense_Mutation p.E2544K 0.10 deleterious_low_confidence(0.01) benign(0.088) TCGA-73-4658-01 1 158435885 158435885 C T OR10K1 Silent p.F178F 0.24 TCGA-73-4658-01 1 158436017 158436017 C A OR10K1 Silent p.I222I 0.33 TCGA-73-4658-01 1 161039489 161039489 C G ARHGAP30 5'UTR 0.16 TCGA-73-4658-01 1 161512661 161512661 G A FCGR3A 3'UTR 0.15 TCGA-73-4658-01 1 170952642 170952642 G T MROH9 Missense_Mutation p.K232N 0.24 tolerated(0.21) benign(0.029) TCGA-73-4658-01 1 179318019 179318019 C T SOAT1 Missense_Mutation p.T419I 0.06 deleterious(0) probably_damaging(1) TCGA-73-4658-01 1 180166508 180166508 C G QSOX1 3'UTR 0.07 TCGA-73-4658-01 1 18152600 18152600 G A ACTL8 Silent p.Q229Q 0.07 TCGA-73-4658-01 1 190068141 190068141 G T BRINP3 Silent p.T436T 0.06 TCGA-73-4658-01 1 205589516 205589516 C A ELK4 Nonsense_Mutation p.E220* 0.27 TCGA-73-4658-01 1 205589655 205589655 C T ELK4 Silent p.E173E 0.27 TCGA-73-4658-01 1 205589806 205589806 C G ELK4 Missense_Mutation p.G123A 0.22 tolerated(0.63) benign(0.005) TCGA-73-4658-01 1 216595491 216595491 C G USH2A Missense_Mutation p.R63P 0.41 benign(0.02) TCGA-73-4658-01 1 217793474 217793474 G A GPATCH2 Silent p.L142L 0.05 TCGA-73-4658-01 1 221879756 221879756 G A DUSP10 Silent p.L288L 0.05 TCGA-73-4658-01 1 22310301 22310301 C A CELA3B Silent p.I159I 0.06 TCGA-73-4658-01 1 229773573 229773573 C T URB2 Silent p.L1071L 0.24 TCGA-73-4658-01 1 230829207 230829207 A T COG2 3'UTR 0.21 TCGA-73-4658-01 1 231830502 231830502 G T DISC1 Missense_Mutation p.W333L 0.27 deleterious(0.05) benign(0.245) TCGA-73-4658-01 1 236212121 236212121 G A NID1 Nonsense_Mutation p.Q132* 0.10 TCGA-73-4658-01 1 237886466 237886466 C T RYR2 Silent p.Y3531Y 0.04 TCGA-73-4658-01 1 245023749 245023749 G C HNRNPU Nonsense_Mutation p.S302* 0.09 TCGA-73-4658-01 1 246823523 246823523 T C CNST Missense_Mutation p.V620A 0.05 deleterious(0) probably_damaging(0.999) TCGA-73-4658-01 1 248262905 248262905 C A OR2L13 Silent p.T76T 0.35 TCGA-73-4658-01 1 248487558 248487558 T C OR2M7 Missense_Mutation p.I105V 0.08 tolerated(1) benign(0) TCGA-73-4658-01 1 248813843 248813843 G T OR2T27 Missense_Mutation p.L115I 0.35 deleterious(0) possibly_damaging(0.905) TCGA-73-4658-01 1 249212112 249212112 G C PGBD2 Silent p.T443T 0.36 TCGA-73-4658-01 1 28605659 28605659 C T SESN2 Silent p.L421L 0.07 TCGA-73-4658-01 1 32127277 32127277 C T COL16A1 Missense_Mutation p.G1237E 0.09 unknown(0) TCGA-73-4658-01 1 33235514 33235514 C A KIAA1522 Missense_Mutation p.P245H 0.12 tolerated(0.06) unknown(0) TCGA-73-4658-01 1 3328444 3328444 C T PRDM16 Silent p.A561A 0.11 TCGA-73-4658-01 1 54060157 54060157 C T GLIS1 Missense_Mutation p.R140Q 0.09 tolerated(0.38) benign(0.003) TCGA-73-4658-01 1 54644993 54644993 C T CYB5RL Silent p.T191T 0.12 TCGA-73-4658-01 1 57347292 57347292 G A C8A Silent p.L213L 0.06 TCGA-73-4658-01 1 6585821 6585821 C T NOL9 3'UTR 0.06 TCGA-73-4658-01 1 6585920 6585920 C T NOL9 Missense_Mutation p.M701I 0.08 tolerated_low_confidence(0.75) benign(0.001) TCGA-73-4658-01 1 6585979 6585979 C T NOL9 Missense_Mutation p.E682K 0.08 tolerated(0.21) benign(0.424) TCGA-73-4658-01 1 82456132 82456132 G T LPHN2 Missense_Mutation p.G1172V 0.14 deleterious(0) probably_damaging(0.959) TCGA-73-4658-01 1 86203079 86203079 C T COL24A1 Silent p.K1594K 0.13 TCGA-73-4658-01 1 94337653 94337653 C T DNTTIP2 Missense_Mutation p.R681K 0.07 deleterious(0) probably_damaging(0.993) TCGA-73-4658-01 1 94337751 94337751 C G DNTTIP2 Missense_Mutation p.M648I 0.07 deleterious(0) probably_damaging(0.928) TCGA-73-4658-01 1 95368680 95368680 G A CNN3 Nonsense_Mutation p.Q82* 0.07 TCGA-73-4658-01 20 33470691 33470691 C A ACSS2 Silent p.I91I 0.06 TCGA-73-4658-01 20 33665863 33665863 G C TRPC4AP Missense_Mutation p.Q95E 0.07 tolerated(0.75) benign(0.108) TCGA-73-4658-01 20 36888966 36888966 C T KIAA1755 5'UTR 0.08 TCGA-73-4658-01 20 42088452 42088452 G A SRSF6 Missense_Mutation p.D100N 0.09 tolerated(0.08) possibly_damaging(0.566) TCGA-73-4658-01 20 42162660 42162660 C T L3MBTL1 Missense_Mutation p.P487L 0.17 deleterious(0.03) benign(0.412) TCGA-73-4658-01 20 47642011 47642011 G A ARFGEF2 Nonsense_Mutation p.W1639* 0.14 TCGA-73-4658-01 20 62126429 62126429 G T EEF1A2 Missense_Mutation p.A117E 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-73-4658-01 20 9417782 9417782 G T PLCB4 Missense_Mutation p.G904V 0.08 tolerated(0.26) benign(0.028) TCGA-73-4658-01 21 28315708 28315708 C A ADAMTS5 Missense_Mutation p.D466Y 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-73-4658-01 21 35229122 35229122 C T ITSN1 Silent p.T1248T 0.06 TCGA-73-4658-01 21 46596309 46596309 G A ADARB1 Silent p.P231P 0.09 TCGA-73-4658-01 21 47410956 47410956 G A COL6A1 Splice_Site p.X373_splice 0.07 TCGA-73-4658-01 22 30688415 30688415 G T TBC1D10A Missense_Mutation p.H499Q 0.11 tolerated_low_confidence(0.13) probably_damaging(0.916) TCGA-73-4658-01 22 33700318 33700318 C A LARGE Missense_Mutation p.V543L 0.10 deleterious(0) possibly_damaging(0.782) TCGA-73-4658-01 22 37273686 37273686 G C NCF4 3'UTR 0.07 TCGA-73-4658-01 2 109367852 109367852 C G RANBP2 Nonsense_Mutation p.S469* 0.05 TCGA-73-4658-01 2 135619539 135619539 G A ACMSD Missense_Mutation p.G67E 0.08 deleterious(0) probably_damaging(0.963) TCGA-73-4658-01 2 141643856 141643856 C T LRP1B Missense_Mutation p.R1272K 0.18 benign(0.067) TCGA-73-4658-01 2 152500637 152500637 A G NEB Missense_Mutation p.Y2551H 0.15 probably_damaging(0.999) TCGA-73-4658-01 2 158971692 158971692 C A UPP2 Missense_Mutation p.A144D 0.13 tolerated(0.31) benign(0.001) TCGA-73-4658-01 2 163134144 163134144 C T IFIH1 Missense_Mutation p.E609K 0.07 deleterious(0.01) probably_damaging(0.928) TCGA-73-4658-01 2 170007439 170007439 G T LRP2 Missense_Mutation p.P4187T 0.07 probably_damaging(1) TCGA-73-4658-01 2 17699599 17699599 G A RAD51AP2 Silent p.S28S 0.06 TCGA-73-4658-01 2 178098846 178098846 C T NFE2L2 Missense_Mutation p.E67K 0.07 deleterious(0) probably_damaging(0.999) TCGA-73-4658-01 2 187703805 187703805 G T ZSWIM2 Missense_Mutation p.D125E 0.12 tolerated(0.43) benign(0.007) TCGA-73-4658-01 2 202001167 202001167 C G CFLAR Intron 0.18 TCGA-73-4658-01 2 209113181 209113181 C T IDH1 Missense_Mutation p.R109K 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-73-4658-01 2 209142380 209142380 C T PIKFYVE Silent p.F187F 0.11 TCGA-73-4658-01 2 220136175 220136175 C A TUBA4B RNA 0.05 TCGA-73-4658-01 2 225658141 225658141 T C DOCK10 Missense_Mutation p.I1730V 0.06 tolerated(1) probably_damaging(0.982) TCGA-73-4658-01 2 228786187 228786187 C T DAW1 Nonsense_Mutation p.Q375* 0.07 TCGA-73-4658-01 2 233527523 233527523 G A EFHD1 Missense_Mutation p.G105E 0.15 deleterious(0.03) probably_damaging(1) TCGA-73-4658-01 2 234669105 234669105 G T UGT1A8 Intron 0.07 TCGA-73-4658-01 2 234894470 234894470 C A TRPM8 Missense_Mutation p.T967N 0.12 deleterious(0) probably_damaging(0.999) TCGA-73-4658-01 2 30480308 30480308 G T LBH Missense_Mutation p.D47Y 0.14 deleterious(0) probably_damaging(0.991) TCGA-73-4658-01 2 47221643 47221643 G T TTC7A Nonsense_Mutation p.E331* 0.06 TCGA-73-4658-01 2 60688107 60688107 G T BCL11A Missense_Mutation p.A647D 0.11 tolerated(0.07) benign(0.319) TCGA-73-4658-01 2 71795348 71795348 C A DYSF Missense_Mutation p.T915K 0.10 tolerated(0.36) possibly_damaging(0.607) TCGA-73-4658-01 2 90122118 90122118 G T IGKV1D-17 Missense_Mutation p.Q112H 0.08 deleterious(0.02) benign(0.165) TCGA-73-4658-01 3 102171778 102171778 G T ZPLD1 Missense_Mutation p.S57I 0.07 deleterious(0.03) benign(0.255) TCGA-73-4658-01 3 105456052 105456052 C G CBLB Missense_Mutation p.C345S 0.11 deleterious(0.02) benign(0.416) TCGA-73-4658-01 3 111710449 111710449 G T ABHD10 Missense_Mutation p.D268Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-73-4658-01 3 115560692 115560692 T A LSAMP Nonsense_Mutation p.R307* 0.18 TCGA-73-4658-01 3 137717828 137717828 G A CLDN18 Missense_Mutation p.V40I 0.14 tolerated(0.58) benign(0.292) TCGA-73-4658-01 3 140406635 140406635 G A TRIM42 Missense_Mutation p.A371T 0.06 tolerated(1) benign(0) TCGA-73-4658-01 3 173997377 173997377 C A NLGN1 Missense_Mutation p.S529Y 0.08 deleterious(0) probably_damaging(0.988) TCGA-73-4658-01 3 175184875 175184875 C G NAALADL2 Nonsense_Mutation p.S479* 0.18 TCGA-73-4658-01 3 179332786 179332786 G T NDUFB5 Missense_Mutation p.G51V 0.21 deleterious(0) possibly_damaging(0.751) TCGA-73-4658-01 3 190993092 190993092 C A UTS2B Nonsense_Mutation p.E95* 0.18 TCGA-73-4658-01 3 21706452 21706452 G A ZNF385D Silent p.L31L 0.17 TCGA-73-4658-01 3 36778975 36778975 G C DCLK3 Silent p.L392L 0.14 TCGA-73-4658-01 3 38415993 38415993 G T XYLB Silent p.A296A 0.15 TCGA-73-4658-01 3 38802834 38802834 C A SCN10A Missense_Mutation p.K244N 0.09 deleterious(0) probably_damaging(0.93) TCGA-73-4658-01 3 44775991 44775991 A G ZNF501 Silent p.E26E 0.10 TCGA-73-4658-01 3 47162194 47162194 C T SETD2 Missense_Mutation p.G1311D 0.08 deleterious_low_confidence(0.03) benign(0.151) TCGA-73-4658-01 3 64636826 64636826 G C ADAMTS9 Missense_Mutation p.H444D 0.09 deleterious(0) probably_damaging(1) TCGA-73-4658-01 3 81539441 81539441 T A GBE1 3'UTR 0.25 TCGA-73-4658-01 3 89521672 89521672 G T EPHA3 Missense_Mutation p.G917C 0.09 deleterious(0.05) probably_damaging(0.952) TCGA-73-4658-01 4 103950041 103950041 C T SLC9B2 Splice_Site p.X419_splice 0.08 TCGA-73-4658-01 4 123333743 123333743 A C ADAD1 Missense_Mutation p.N343T 0.06 tolerated(0.05) benign(0.077) TCGA-73-4658-01 4 129767550 129767550 C T JADE1 Silent p.I53I 0.08 TCGA-73-4658-01 4 134072378 134072378 C G PCDH10 Missense_Mutation p.S361R 0.08 deleterious(0) probably_damaging(0.995) TCGA-73-4658-01 4 141464740 141464752 TGTGAGTATTAAA - ELMOD2 Splice_Site p.X246_splice 0.14 TCGA-73-4658-01 4 153896593 153896593 T A FHDC1 Missense_Mutation p.L717H 0.11 tolerated(0.13) possibly_damaging(0.56) TCGA-73-4658-01 4 157684257 157684257 C T PDGFC Silent p.G341G 0.11 TCGA-73-4658-01 4 159554606 159554606 G T RXFP1 Missense_Mutation p.D317Y 0.08 deleterious(0.01) benign(0.043) TCGA-73-4658-01 4 162680590 162680590 C G FSTL5 Missense_Mutation p.A234P 0.12 deleterious(0.02) probably_damaging(0.979) TCGA-73-4658-01 4 167655985 167655985 G T SPOCK3 3'UTR 0.09 TCGA-73-4658-01 4 186544288 186544288 G A SORBS2 Silent p.I861I 0.09 TCGA-73-4658-01 4 22748963 22748963 G C GBA3 Missense_Mutation p.G111R 0.05 tolerated(0.06) benign(0.162) TCGA-73-4658-01 4 36069551 36069551 T A ARAP2 Missense_Mutation p.Q1698L 0.10 tolerated_low_confidence(0.1) benign(0.05) TCGA-73-4658-01 4 38776982 38776982 A T TLR10 Nonsense_Mutation p.L77* 0.18 TCGA-73-4658-01 4 38776983 38776983 A T TLR10 Missense_Mutation p.L77M 0.18 deleterious(0) probably_damaging(1) TCGA-73-4658-01 4 40827964 40827964 C T APBB2 Missense_Mutation p.E586K 0.09 deleterious(0) probably_damaging(0.997) TCGA-73-4658-01 4 6304142 6304142 G A WFS1 Missense_Mutation p.A874T 0.13 deleterious(0) probably_damaging(0.998) TCGA-73-4658-01 4 6473956 6473956 T C PPP2R2C Translation_Start_Site p.M1? 0.14 deleterious_low_confidence(0) benign(0.009) TCGA-73-4658-01 4 6863504 6863504 C T KIAA0232 Silent p.F465F 0.08 TCGA-73-4658-01 4 85707201 85707201 C A WDFY3 Silent p.V1331V 0.05 TCGA-73-4658-01 4 85707203 85707203 C A WDFY3 Missense_Mutation p.V1331L 0.05 tolerated(0.1) benign(0.009) TCGA-73-4658-01 4 88231461 88231461 C T HSD17B13 Missense_Mutation p.G249E 0.08 deleterious(0) probably_damaging(0.998) TCGA-73-4658-01 4 88231462 88231462 C T HSD17B13 Missense_Mutation p.G249R 0.08 deleterious(0) probably_damaging(0.98) TCGA-73-4658-01 4 96761310 96761310 C A PDHA2 Silent p.A3A 0.33 TCGA-73-4658-01 5 112418659 112418659 C G MCC Missense_Mutation p.C561S 0.11 tolerated(0.63) probably_damaging(0.974) TCGA-73-4658-01 5 132439557 132439557 G T HSPA4 Nonsense_Mutation p.E720* 0.15 TCGA-73-4658-01 5 132439655 132439655 G A HSPA4 Silent p.Q752Q 0.08 TCGA-73-4658-01 5 135207408 135207408 G A SLC25A48 Intron 0.10 TCGA-73-4658-01 5 1394811 1394811 T C SLC6A3 3'UTR 0.05 TCGA-73-4658-01 5 140012478 140012478 C T CD14 Missense_Mutation p.D31N 0.12 tolerated(0.16) benign(0.015) TCGA-73-4658-01 5 140209494 140209494 G T PCDHA6 Missense_Mutation p.W606C 0.11 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-73-4658-01 5 140242484 140242484 T A AC005609.1 Silent p.A164A 0.15 TCGA-73-4658-01 5 140256157 140256157 C T PCDHA12 Missense_Mutation p.T367I 0.19 deleterious_low_confidence(0.03) probably_damaging(0.943) TCGA-73-4658-01 5 140725007 140725007 C A PCDHGA3 Silent p.A469A 0.08 TCGA-73-4658-01 5 141036183 141036183 C A ARAP3 Missense_Mutation p.R1226L 0.15 deleterious(0) probably_damaging(0.962) TCGA-73-4658-01 5 141243969 141243969 C A PCDH1 Nonsense_Mutation p.E643* 0.06 TCGA-73-4658-01 5 14508363 14508363 G C TRIO Silent p.A3042A 0.25 TCGA-73-4658-01 5 145719212 145719212 C A POU4F3 Missense_Mutation p.F74L 0.06 tolerated(0.39) benign(0.011) TCGA-73-4658-01 5 150901616 150901616 G T FAT2 Missense_Mutation p.S3513Y 0.14 probably_damaging(1) TCGA-73-4658-01 5 156746826 156746826 C T CYFIP2 Silent p.F445F 0.09 TCGA-73-4658-01 5 156809633 156809633 A T CYFIP2 Silent p.A999A 0.11 TCGA-73-4658-01 5 159344009 159344009 A T ADRA1B Missense_Mutation p.S33C 0.08 tolerated(0.1) benign(0.145) TCGA-73-4658-01 5 161277868 161277868 C T GABRA1 Silent p.L18L 0.06 TCGA-73-4658-01 5 161578752 161578752 C G GABRG2 Missense_Mutation p.S422C 0.06 deleterious(0.02) possibly_damaging(0.789) TCGA-73-4658-01 5 175722195 175722195 A T SIMC1 Missense_Mutation p.I98F 0.21 deleterious(0.05) benign(0.396) TCGA-73-4658-01 5 176825108 176825108 C T SLC34A1 Missense_Mutation p.R581C 0.10 tolerated(0.1) benign(0.205) TCGA-73-4658-01 5 179192648 179192648 A T MAML1 Missense_Mutation p.N213Y 0.09 deleterious(0.01) benign(0.332) TCGA-73-4658-01 5 180582569 180582569 C G OR2V2 Silent p.L209L 0.08 TCGA-73-4658-01 5 180668575 180668575 C T GNB2L1 Missense_Mutation p.D116N 0.06 deleterious(0.05) possibly_damaging(0.553) TCGA-73-4658-01 5 182155 182155 C T PLEKHG4B Missense_Mutation p.S1178F 0.22 tolerated(1) benign(0.001) TCGA-73-4658-01 5 23522899 23522899 G A PRDM9 Missense_Mutation p.E263K 0.07 deleterious(0) benign(0.379) TCGA-73-4658-01 5 24535931 24535931 C A CDH10 Missense_Mutation p.G176V 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-73-4658-01 5 32712263 32712263 G T NPR3 Missense_Mutation p.K127N 0.08 deleterious(0) benign(0.436) TCGA-73-4658-01 5 36976076 36976076 C T NIPBL Missense_Mutation p.T356I 0.24 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-73-4658-01 5 39364595 39364595 G A C9 5'UTR 0.15 TCGA-73-4658-01 5 52240860 52240860 A G ITGA1 Missense_Mutation p.R1125G 0.09 tolerated(0.08) possibly_damaging(0.71) TCGA-73-4658-01 5 68661433 68661433 G C TAF9 Missense_Mutation p.F44L 0.09 deleterious(0.01) benign(0.314) TCGA-73-4658-01 5 73930614 73930614 T - ENC1 Frame_Shift_Del p.N566Tfs*10 0.10 TCGA-73-4658-01 5 74017334 74017334 C G GFM2 3'UTR 0.10 TCGA-73-4658-01 5 75490824 75490824 C T SV2C Missense_Mutation p.L221F 0.09 deleterious(0) probably_damaging(0.977) TCGA-73-4658-01 5 911998 911998 G A TRIP13 Missense_Mutation p.E303K 0.06 tolerated(0.06) benign(0.148) TCGA-73-4658-01 6 109762593 109762593 C A SMPD2 Missense_Mutation p.D28E 0.18 tolerated(1) benign(0.002) TCGA-73-4658-01 6 124979454 124979454 C A NKAIN2 Silent p.R132R 0.19 TCGA-73-4658-01 6 132910535 132910535 C G TAAR5 Missense_Mutation p.E97D 0.08 deleterious(0.02) probably_damaging(0.977) TCGA-73-4658-01 6 137330561 137330561 G T IL20RA Missense_Mutation p.P158T 0.18 deleterious(0.04) probably_damaging(0.941) TCGA-73-4658-01 6 159463125 159463125 G T TAGAP Silent p.L100L 0.07 TCGA-73-4658-01 6 25762199 25762199 C A SLC17A4 Silent p.T3T 0.11 TCGA-73-4658-01 6 25762200 25762200 G T SLC17A4 Nonsense_Mutation p.G4* 0.11 TCGA-73-4658-01 6 26197129 26197129 C T HIST1H3D Missense_Mutation p.R117Q 0.06 deleterious_low_confidence(0) benign(0.098) TCGA-73-4658-01 6 26197189 26197189 C T HIST1H3D Missense_Mutation p.C97Y 0.08 tolerated_low_confidence(0.06) benign(0.042) TCGA-73-4658-01 6 26273272 26273272 G C HIST1H2BI Missense_Mutation p.Q23H 0.05 deleterious_low_confidence(0.02) unknown(0) TCGA-73-4658-01 6 26452057 26452057 A C BTN3A3 Silent p.T391T 0.07 TCGA-73-4658-01 6 26468505 26468505 G A BTN2A1 Missense_Mutation p.D438N 0.10 deleterious(0.01) benign(0.143) TCGA-73-4658-01 6 27835140 27835140 C T HIST1H1B Silent p.E56E 0.07 TCGA-73-4658-01 6 27840937 27840937 G A HIST1H4L 3'UTR 0.15 TCGA-73-4658-01 6 29407927 29407927 G A OR10C1 Silent p.V45V 0.13 TCGA-73-4658-01 6 31079340 31079340 G A C6orf15 Missense_Mutation p.R266W 0.08 tolerated(0.09) probably_damaging(0.942) TCGA-73-4658-01 6 32097284 32097284 G A FKBPL Nonsense_Mutation p.Q92* 0.12 TCGA-73-4658-01 6 32181887 32181887 C A NOTCH4 Nonsense_Mutation p.G723* 0.14 TCGA-73-4658-01 6 345916 345916 G T DUSP22 Missense_Mutation p.C84F 0.09 deleterious(0) probably_damaging(1) TCGA-73-4658-01 6 398883 398883 C T IRF4 Silent p.P231P 0.09 TCGA-73-4658-01 6 46826549 46826549 G C GPR116 Missense_Mutation p.L1031V 0.06 deleterious(0.04) possibly_damaging(0.718) TCGA-73-4658-01 6 51890718 51890718 G A PKHD1 Missense_Mutation p.A1297V 0.06 tolerated(0.38) benign(0.005) TCGA-73-4658-01 6 71235557 71235558 - T FAM135A Frame_Shift_Ins p.S926Ffs*3 0.09 TCGA-73-4658-01 6 84371233 84371233 C T SNAP91 Missense_Mutation p.R147K 0.12 tolerated(0.69) unknown(0) TCGA-73-4658-01 7 100850884 100850884 C A PLOD3 Missense_Mutation p.S637I 0.13 deleterious(0.01) benign(0.007) TCGA-73-4658-01 7 100850885 100850885 T C PLOD3 Missense_Mutation p.S637G 0.13 deleterious(0.01) benign(0.012) TCGA-73-4658-01 7 107880462 107880462 C T NRCAM Missense_Mutation p.R16K 0.05 tolerated(1) benign(0.04) TCGA-73-4658-01 7 112723882 112723882 C A GPR85 Missense_Mutation p.G299C 0.21 tolerated(0.1) probably_damaging(0.957) TCGA-73-4658-01 7 117876107 117876107 C T ANKRD7 Missense_Mutation p.P161S 0.06 deleterious(0.02) possibly_damaging(0.836) TCGA-73-4658-01 7 122338097 122338097 T A RNF133 Silent p.T292T 0.14 TCGA-73-4658-01 7 123332669 123332669 G A WASL Missense_Mutation p.P360L 0.18 tolerated(0.52) unknown(0) TCGA-73-4658-01 7 135080502 135080502 G C CNOT4 Nonsense_Mutation p.S338* 0.13 TCGA-73-4658-01 7 138189108 138189108 G T TRIM24 Missense_Mutation p.K146N 0.11 deleterious(0) possibly_damaging(0.889) TCGA-73-4658-01 7 138347839 138347839 C T SVOPL Missense_Mutation p.D109N 0.14 deleterious(0) probably_damaging(0.981) TCGA-73-4658-01 7 142124270 142124270 C A TRBV6-8 Missense_Mutation p.A70S 0.12 tolerated(0.28) benign(0.005) TCGA-73-4658-01 7 148769014 148769014 G C ZNF786 Missense_Mutation p.P284A 0.12 tolerated(0.21) benign(0.015) TCGA-73-4658-01 7 149519225 149519225 C T SSPO RNA 0.18 TCGA-73-4658-01 7 27135384 27135384 C G HOXA1 Missense_Mutation p.D50H 0.09 deleterious(0) probably_damaging(0.999) TCGA-73-4658-01 7 33057107 33057107 C A NT5C3A Missense_Mutation p.G218C 0.22 deleterious(0) possibly_damaging(0.531) TCGA-73-4658-01 7 35242089 35242089 T A TBX20 Missense_Mutation p.I433F 0.24 deleterious_low_confidence(0.01) benign(0.034) TCGA-73-4658-01 7 39610121 39610121 G C YAE1D1 Missense_Mutation p.G49A 0.14 deleterious(0.01) probably_damaging(1) TCGA-73-4658-01 7 44259689 44259689 G T CAMK2B Nonsense_Mutation p.S658* 0.12 TCGA-73-4658-01 7 45650011 45650011 G A ADCY1 Missense_Mutation p.V275I 0.09 deleterious(0.01) benign(0.305) TCGA-73-4658-01 7 4798715 4798715 G A FOXK1 Silent p.L426L 0.09 TCGA-73-4658-01 7 6029467 6029467 G C PMS2 Missense_Mutation p.L370V 0.19 deleterious(0.02) benign(0.399) TCGA-73-4658-01 7 77265123 77265123 G C PTPN12 Missense_Mutation p.S700T 0.16 tolerated(0.13) benign(0.075) TCGA-73-4658-01 7 87913242 87913242 C G STEAP4 Missense_Mutation p.E115Q 0.09 tolerated(0.15) benign(0.126) TCGA-73-4658-01 7 892283 892283 A G SUN1 Missense_Mutation p.I297V 0.06 tolerated(0.08) benign(0) TCGA-73-4658-01 7 89793973 89793973 G A STEAP1 Silent p.K315K 0.09 TCGA-73-4658-01 7 89984473 89984473 C G GTPBP10 Missense_Mutation p.F131L 0.11 deleterious(0) probably_damaging(0.963) TCGA-73-4658-01 8 100994191 100994191 C T RGS22 Missense_Mutation p.G1112R 0.08 deleterious(0) probably_damaging(1) TCGA-73-4658-01 8 104427647 104427647 G T DCAF13 Silent p.S143S 0.16 TCGA-73-4658-01 8 113484921 113484921 C G CSMD3 Missense_Mutation p.R1765P 0.14 tolerated(0.11) probably_damaging(0.969) TCGA-73-4658-01 8 132002737 132002737 T A ADCY8 Missense_Mutation p.I338F 0.05 deleterious(0.01) benign(0.369) TCGA-73-4658-01 8 133141672 133141672 C A KCNQ3 Missense_Mutation p.G819V 0.22 deleterious(0.05) probably_damaging(0.98) TCGA-73-4658-01 8 145140004 145140004 G A GPAA1 Missense_Mutation p.G408D 0.12 tolerated(1) benign(0.049) TCGA-73-4658-01 8 22067158 22067158 G A BMP1 Missense_Mutation p.D926N 0.05 deleterious(0.05) possibly_damaging(0.751) TCGA-73-4658-01 8 30700581 30700581 C T TEX15 Missense_Mutation p.D1985N 0.06 tolerated(0.08) benign(0.158) TCGA-73-4658-01 8 31024633 31024633 G C WRN Missense_Mutation p.D1360H 0.07 tolerated(0.08) benign(0.046) TCGA-73-4658-01 8 48805726 48805726 C G PRKDC Missense_Mutation p.R1273T 0.19 benign(0.363) TCGA-73-4658-01 8 48817449 48817449 C A PRKDC Missense_Mutation p.A1008S 0.08 benign(0.426) TCGA-73-4658-01 8 59750834 59750834 C A TOX Missense_Mutation p.G244W 0.14 deleterious(0) possibly_damaging(0.879) TCGA-73-4658-01 8 62212729 62212729 G A CLVS1 Missense_Mutation p.D115N 0.11 tolerated(0.05) benign(0.414) TCGA-73-4658-01 8 72968083 72968083 T A TRPA1 Missense_Mutation p.Q401L 0.08 tolerated(0.34) benign(0.008) TCGA-73-4658-01 8 73921227 73921227 G A TERF1 Missense_Mutation p.E36K 0.16 tolerated_low_confidence(0.07) benign(0.032) TCGA-73-4658-01 8 86356314 86356314 A G CA3 Missense_Mutation p.K135E 0.14 tolerated(0.61) benign(0.257) TCGA-73-4658-01 8 92406624 92406624 C A SLC26A7 3'UTR 0.20 TCGA-73-4658-01 9 100092805 100092805 C T CCDC180 Missense_Mutation p.P721L 0.06 tolerated(0.3) benign(0.108) TCGA-73-4658-01 9 108510436 108510436 A G TMEM38B Missense_Mutation p.M209V 0.07 tolerated(0.13) benign(0.057) TCGA-73-4658-01 9 113198749 113198749 T G SVEP1 Missense_Mutation p.K1559Q 0.26 benign(0.007) TCGA-73-4658-01 9 114338805 114338805 G A PTGR1 Intron 0.16 TCGA-73-4658-01 9 139903454 139903454 C T ABCA2 Silent p.V2293V 0.09 TCGA-73-4658-01 9 140954189 140954189 G T CACNA1B Silent p.A1556A 0.12 TCGA-73-4658-01 9 19520910 19520910 A G SLC24A2 Missense_Mutation p.I573T 0.07 deleterious(0) probably_damaging(0.998) TCGA-73-4658-01 9 4629136 4629136 C A SPATA6L Missense_Mutation p.R70S 0.08 deleterious(0.01) probably_damaging(0.943) TCGA-73-4658-01 9 90387899 90387899 G A CTSL3P RNA 0.09 TCGA-73-4658-01 9 97082700 97082700 G T NUTM2F Silent p.V386V 0.18 TCGA-73-4658-01 X 101818416 101818416 C A NXF4 RNA 0.08 TCGA-73-4658-01 X 101910606 101910606 C A GPRASP1 Missense_Mutation p.Q589K 0.08 tolerated(0.1) benign(0.005) TCGA-73-4658-01 X 103268042 103268042 C A H2BFWT Missense_Mutation p.R64L 0.13 tolerated(0.24) benign(0.149) TCGA-73-4658-01 X 107315990 107315990 G T VSIG1 Nonsense_Mutation p.G202* 0.09 TCGA-73-4658-01 X 109919305 109919305 C A CHRDL1 3'UTR 0.22 TCGA-73-4658-01 X 118678385 118678385 T C CXorf56 Silent p.A118A 0.07 TCGA-73-4658-01 X 119760772 119760772 C A C1GALT1C1 Missense_Mutation p.A84S 0.09 deleterious(0.01) probably_damaging(0.939) TCGA-73-4658-01 X 123526198 123526198 C A TENM1 Missense_Mutation p.A1798S 0.16 deleterious(0.01) benign(0.028) TCGA-73-4658-01 X 124030091 124030091 C T TENM1 Splice_Site p.X73_splice 0.12 TCGA-73-4658-01 X 129060313 129060313 C T UTP14A Nonsense_Mutation p.Q681* 0.08 TCGA-73-4658-01 X 129484662 129484662 G T SLC25A14 Missense_Mutation p.G152V 0.04 deleterious(0) possibly_damaging(0.831) TCGA-73-4658-01 X 130678286 130678286 A T OR13H1 Missense_Mutation p.Q80L 0.06 tolerated(0.23) benign(0.042) TCGA-73-4658-01 X 132458235 132458235 C A GPC4 Missense_Mutation p.A217S 0.09 deleterious(0) probably_damaging(0.998) TCGA-73-4658-01 X 133609244 133609244 G T HPRT1 Missense_Mutation p.E56D 0.19 tolerated(1) benign(0) TCGA-73-4658-01 X 135098878 135098878 G A SLC9A6 Silent p.Q437Q 0.06 TCGA-73-4658-01 X 137793040 137793040 C A FGF13 Intron 0.07 TCGA-73-4658-01 X 147063058 147063058 G C FMR1NB Missense_Mutation p.E46Q 0.06 tolerated(0.94) benign(0.001) TCGA-73-4658-01 X 151935329 151935329 C A MAGEA3 Nonsense_Mutation p.E280* 0.17 TCGA-73-4658-01 X 153668831 153668831 G C GDI1 Missense_Mutation p.E233Q 0.11 deleterious(0) probably_damaging(1) TCGA-73-4658-01 X 153689814 153689814 G C PLXNA3 Missense_Mutation p.G324R 0.09 deleterious(0) probably_damaging(1) TCGA-73-4658-01 X 15425673 15425673 C A PIR Splice_Site p.X189_splice 0.07 TCGA-73-4658-01 X 15584413 15584413 C T ACE2 Missense_Mutation p.D693N 0.08 tolerated_low_confidence(0.15) benign(0.003) TCGA-73-4658-01 X 18338471 18338471 G T SCML2 Missense_Mutation p.S156Y 0.08 deleterious(0) possibly_damaging(0.678) TCGA-73-4658-01 X 23803931 23803931 G A SAT1 Silent p.K158K 0.12 TCGA-73-4658-01 X 37028770 37028770 C A FAM47C Missense_Mutation p.R763S 0.11 tolerated(0.44) benign(0.001) TCGA-73-4658-01 X 52682477 52682477 G C SSX7 Missense_Mutation p.Q16E 0.09 deleterious(0) probably_damaging(0.989) TCGA-73-4658-01 X 52893844 52893844 C T XAGE3 Silent p.K91K 0.06 TCGA-73-4658-01 X 54949608 54949608 G T TRO Missense_Mutation p.A215S 0.07 tolerated(0.1) unknown(0) TCGA-73-4658-01 X 55043989 55043989 C T ALAS2 Silent p.K311K 0.07 TCGA-73-4658-01 X 70598761 70598761 G A TAF1 Missense_Mutation p.D434N 0.09 tolerated(0.09) possibly_damaging(0.575) TCGA-73-4658-01 X 70823695 70823695 G A ACRC Missense_Mutation p.D190N 0.11 unknown(0) TCGA-73-4658-01 X 71840676 71840676 G T PHKA1 Missense_Mutation p.P679H 0.10 deleterious(0.02) benign(0.088) TCGA-73-4658-01 X 75649049 75649049 G T MAGEE1 Missense_Mutation p.E242D 0.10 deleterious_low_confidence(0.01) probably_damaging(0.952) TCGA-73-4658-01 X 78216425 78216425 C G P2RY10 Silent p.L136L 0.25 TCGA-73-4659-01 10 103761774 103761774 C A C10orf76 Silent p.L368L 0.18 TCGA-73-4659-01 10 106907472 106907472 G T SORCS3 Missense_Mutation p.R467L 0.29 deleterious(0.03) benign(0.046) TCGA-73-4659-01 10 115345649 115345649 T A HABP2 Missense_Mutation p.S490R 0.34 deleterious(0) probably_damaging(0.931) TCGA-73-4659-01 10 115381717 115381717 C A NRAP Missense_Mutation p.G894C 0.29 deleterious(0) probably_damaging(1) TCGA-73-4659-01 10 133758920 133758920 G A PPP2R2D Silent p.L228L 0.20 TCGA-73-4659-01 10 135102477 135102477 G A TUBGCP2 Missense_Mutation p.P498S 0.20 deleterious(0.02) probably_damaging(1) TCGA-73-4659-01 10 21074656 21074656 C A NEBL 3'UTR 0.22 TCGA-73-4659-01 10 47933915 47933915 G T FAM21B Nonsense_Mutation p.E663* 0.60 TCGA-73-4659-01 10 55826582 55826582 G A PCDH15 Missense_Mutation p.P719S 0.22 tolerated(0.64) benign(0.028) TCGA-73-4659-01 10 69933835 69933835 G C MYPN Missense_Mutation p.Q662H 0.24 deleterious(0) probably_damaging(0.998) TCGA-73-4659-01 10 70776115 70776115 G T KIAA1279 Missense_Mutation p.M603I 0.28 deleterious(0) probably_damaging(0.981) TCGA-73-4659-01 10 7801874 7801874 T A KIN Silent p.S366S 0.08 TCGA-73-4659-01 10 95517964 95517964 T C LGI1 Silent p.Y21Y 0.18 TCGA-73-4659-01 11 107501260 107501260 G T ELMOD1 Missense_Mutation p.K45N 0.19 tolerated(0.22) probably_damaging(0.974) TCGA-73-4659-01 11 108160401 108160401 A T ATM Nonsense_Mutation p.R1437* 0.13 TCGA-73-4659-01 11 119024853 119024853 G A ABCG4 Missense_Mutation p.R119K 0.22 tolerated(0.97) benign(0.015) TCGA-73-4659-01 11 121986476 121986476 C G BLID Missense_Mutation p.G52A 0.20 tolerated_low_confidence(0.21) benign(0.101) TCGA-73-4659-01 11 129817146 129817146 C T PRDM10 Silent p.E138E 0.12 TCGA-73-4659-01 11 18195006 18195006 T C MRGPRX4 Missense_Mutation p.L68P 0.33 deleterious(0) probably_damaging(1) TCGA-73-4659-01 11 26677674 26677674 G T ANO3 Missense_Mutation p.C860F 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-73-4659-01 11 26725452 26725452 C A SLC5A12 Missense_Mutation p.V190F 0.11 tolerated(0.76) possibly_damaging(0.701) TCGA-73-4659-01 11 5255339 5255339 T C HBD Missense_Mutation p.K66R 0.38 tolerated(0.09) benign(0.054) TCGA-73-4659-01 11 55135855 55135855 C T OR4A15 Missense_Mutation p.R166C 0.23 deleterious_low_confidence(0) possibly_damaging(0.873) TCGA-73-4659-01 11 55681403 55681403 C T OR5W2 Missense_Mutation p.C219Y 0.24 tolerated(0.07) benign(0.041) TCGA-73-4659-01 11 55681593 55681593 C G OR5W2 Missense_Mutation p.A156P 0.14 deleterious(0) probably_damaging(0.961) TCGA-73-4659-01 11 60274525 60274525 C A MS4A12 Missense_Mutation p.S244R 0.16 tolerated(0.09) benign(0) TCGA-73-4659-01 11 6291976 6291976 G A CCKBR Missense_Mutation p.D252N 0.32 deleterious(0) benign(0.403) TCGA-73-4659-01 11 63918756 63918756 G A MACROD1 Missense_Mutation p.R158C 0.14 tolerated(0.07) benign(0.005) TCGA-73-4659-01 11 65271178 65271178 G C MALAT1 RNA 0.15 TCGA-73-4659-01 11 71693869 71693869 G T RNF121 Missense_Mutation p.W102C 0.22 deleterious(0) probably_damaging(0.985) TCGA-73-4659-01 11 89392728 89392728 G T FOLH1B RNA 0.29 TCGA-73-4659-01 12 104129313 104129313 G A STAB2 Silent p.L1835L 0.21 TCGA-73-4659-01 12 114841688 114841688 C A TBX5 Nonsense_Mutation p.E6* 0.26 TCGA-73-4659-01 12 116421007 116421007 C A MED13L Missense_Mutation p.D1624Y 0.31 deleterious(0.01) probably_damaging(0.927) TCGA-73-4659-01 12 123782543 123782543 C A SBNO1 Missense_Mutation p.D1341Y 0.25 deleterious(0) benign(0.367) TCGA-73-4659-01 12 132325241 132325241 C A MMP17 Silent p.A182A 0.18 TCGA-73-4659-01 12 14634051 14634051 C T ATF7IP Missense_Mutation p.P1071L 0.20 deleterious_low_confidence(0) unknown(0) TCGA-73-4659-01 12 45823076 45823076 A G ANO6 Silent p.L926L 0.19 TCGA-73-4659-01 12 5155110 5155110 C A KCNA5 Silent p.S599S 0.33 TCGA-73-4659-01 12 52778968 52778968 G T KRT84 Silent p.A134A 0.29 TCGA-73-4659-01 12 53012212 53012212 G A KRT73 Nonsense_Mutation p.R33* 0.27 TCGA-73-4659-01 12 53427638 53427638 A G EIF4B Missense_Mutation p.K343R 0.39 tolerated(0.24) possibly_damaging(0.874) TCGA-73-4659-01 12 56120552 56120552 G A CD63 Missense_Mutation p.R120W 0.09 deleterious(0.05) possibly_damaging(0.773) TCGA-73-4659-01 12 57864593 57864593 C T GLI1 Silent p.P690P 0.18 TCGA-73-4659-01 12 64814179 64814179 G T XPOT Nonsense_Mutation p.E241* 0.23 TCGA-73-4659-01 12 76779954 76779954 A G OSBPL8 Silent p.A509A 0.22 TCGA-73-4659-01 12 77421759 77421759 G T E2F7 Missense_Mutation p.P682T 0.23 tolerated(0.13) benign(0.002) TCGA-73-4659-01 12 78444594 78444594 G T NAV3 Missense_Mutation p.R728M 0.22 deleterious(0) probably_damaging(0.999) TCGA-73-4659-01 13 25744101 25744101 C - AMER2 Frame_Shift_Del p.D553Tfs*32 0.31 TCGA-73-4659-01 13 28143301 28143301 A G LNX2 Silent p.L174L 0.33 TCGA-73-4659-01 13 37679478 37679478 G A CSNK1A1L 5'UTR 0.36 TCGA-73-4659-01 14 105395257 105395257 G A PLD4 Silent p.S152S 0.25 TCGA-73-4659-01 14 20692480 20692480 A T OR11H6 Silent p.A204A 0.28 TCGA-73-4659-01 14 20857777 20857777 T A TEP1 Silent p.V819V 0.30 TCGA-73-4659-01 14 21623954 21623954 C T OR5AU1 Silent p.L77L 0.21 TCGA-73-4659-01 14 21878145 21878145 G A CHD8 Silent p.P743P 0.28 TCGA-73-4659-01 14 21896230 21896230 C T CHD8 Missense_Mutation p.E467K 0.13 deleterious(0) probably_damaging(0.956) TCGA-73-4659-01 14 23855623 23855623 C A MYH6 Missense_Mutation p.M1620I 0.23 deleterious(0.02) possibly_damaging(0.457) TCGA-73-4659-01 14 30133002 30133002 C A PRKD1 Missense_Mutation p.R200M 0.20 deleterious(0) probably_damaging(0.937) TCGA-73-4659-01 14 61190627 61190627 C G SIX4 Missense_Mutation p.G56R 0.26 deleterious_low_confidence(0.04) possibly_damaging(0.637) TCGA-73-4659-01 14 67675040 67675040 G C FAM71D Missense_Mutation p.R345T 0.07 deleterious_low_confidence(0) benign(0.312) TCGA-73-4659-01 14 69347566 69347566 C A ACTN1 Silent p.A698A 0.38 TCGA-73-4659-01 14 76948374 76948374 G T ESRRB Missense_Mutation p.R177L 0.21 deleterious(0) probably_damaging(0.994) TCGA-73-4659-01 14 95910832 95910832 G C SYNE3 Nonsense_Mutation p.S589* 0.37 TCGA-73-4659-01 15 101523840 101523840 A T LRRK1 Silent p.P123P 0.32 TCGA-73-4659-01 15 22332478 22332478 C A RP11-69H14.6 RNA 0.10 TCGA-73-4659-01 15 22848827 22848827 G T TUBGCP5 Intron 0.16 TCGA-73-4659-01 15 25432736 25432736 C T SNORD115-10 RNA 0.11 TCGA-73-4659-01 15 35045111 35045111 T G GJD2 Silent p.P178P 0.14 TCGA-73-4659-01 15 56923982 56923982 C G ZNF280D Missense_Mutation p.R885P 0.11 tolerated(0.13) benign(0.003) TCGA-73-4659-01 15 68649486 68649486 T A ITGA11 Intron 0.12 TCGA-73-4659-01 15 69327818 69327818 T A NOX5 Missense_Mutation p.V327E 0.11 deleterious(0) possibly_damaging(0.781) TCGA-73-4659-01 15 90020439 90020439 T A RHCG Splice_Site p.X371_splice 0.06 TCGA-73-4659-01 15 91835612 91835612 G T SV2B Missense_Mutation p.G628C 0.24 deleterious(0) probably_damaging(1) TCGA-73-4659-01 16 1308402 1308402 G T TPSD1 3'UTR 0.28 TCGA-73-4659-01 16 15225424 15225424 C A RP11-1186N24.5 RNA 0.16 TCGA-73-4659-01 16 27476052 27476052 C G GTF3C1 Missense_Mutation p.D1821H 0.34 tolerated(0.36) benign(0.006) TCGA-73-4659-01 16 50746260 50746260 G C NOD2 Missense_Mutation p.C813S 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-73-4659-01 16 55719131 55719131 C A SLC6A2 Missense_Mutation p.L241M 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-73-4659-01 16 71482826 71482826 C T ZNF23 Missense_Mutation p.E368K 0.33 deleterious(0.01) possibly_damaging(0.761) TCGA-73-4659-01 17 10265549 10265549 A T MYH13 Missense_Mutation p.W131R 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-73-4659-01 17 11583119 11583119 A T DNAH9 Missense_Mutation p.L1133F 0.22 benign(0.361) TCGA-73-4659-01 17 20922486 20922486 T C USP22 Missense_Mutation p.K144R 0.27 tolerated(0.38) benign(0.001) TCGA-73-4659-01 17 35297911 35297911 C G LHX1 Silent p.T134T 0.20 TCGA-73-4659-01 17 39880924 39880924 C A HAP1 3'UTR 0.37 TCGA-73-4659-01 17 42882388 42882388 C A GJC1 Missense_Mutation p.R266S 0.09 tolerated(0.1) benign(0.007) TCGA-73-4659-01 17 4787674 4787674 G T MINK1 Missense_Mutation p.C108F 0.13 deleterious(0) possibly_damaging(0.9) TCGA-73-4659-01 17 54517752 54517752 G T ANKFN1 Missense_Mutation p.Q328H 0.18 tolerated(0.09) benign(0.005) TCGA-73-4659-01 17 80622412 80622412 T A RAB40B Missense_Mutation p.T55S 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-73-4659-01 17 80828189 80828189 G T TBCD Missense_Mutation p.V470L 0.20 tolerated(0.05) benign(0.087) TCGA-73-4659-01 18 31319575 31319575 T C ASXL3 Missense_Mutation p.L736P 0.25 probably_damaging(0.956) TCGA-73-4659-01 18 43460143 43460143 A T EPG5 Missense_Mutation p.L1855Q 0.14 deleterious(0) probably_damaging(0.991) TCGA-73-4659-01 18 627315 627315 A T CLUL1 Missense_Mutation p.Q214H 0.25 deleterious(0) probably_damaging(0.936) TCGA-73-4659-01 18 67860546 67860546 C A RTTN Missense_Mutation p.D329Y 0.24 deleterious(0) probably_damaging(1) TCGA-73-4659-01 19 1123583 1123597 GCCTCCTCCTCCTCA - SBNO2 In_Frame_Del p.E191_E195del 0.32 TCGA-73-4659-01 19 1207064 1207065 - G STK11 Frame_Shift_Ins p.D53Gfs*110 0.64 TCGA-73-4659-01 19 35761708 35761708 C T USF2 Missense_Mutation p.P223L 0.29 deleterious(0.03) benign(0.004) TCGA-73-4659-01 19 40023401 40023401 G A EID2B Silent p.P14P 0.25 TCGA-73-4659-01 19 46521386 46521386 C T CCDC61 Silent p.S473S 0.16 TCGA-73-4659-01 19 55450436 55450436 G A NLRP7 Missense_Mutation p.A584V 0.10 tolerated(1) benign(0) TCGA-73-4659-01 19 56320357 56320357 G A NLRP11 Missense_Mutation p.T540M 0.11 deleterious(0.02) benign(0.178) TCGA-73-4659-01 19 56369782 56369782 G T NLRP4 Silent p.P341P 0.18 TCGA-73-4659-01 1 103435776 103435776 G T COL11A1 Missense_Mutation p.T954N 0.30 unknown(0) TCGA-73-4659-01 1 117632685 117632685 G T TTF2 Missense_Mutation p.R784L 0.14 deleterious(0) probably_damaging(0.997) TCGA-73-4659-01 1 145580564 145580564 A G PIAS3 Silent p.K288K 0.16 TCGA-73-4659-01 1 149882197 149882197 G A SV2A Silent p.L338L 0.11 TCGA-73-4659-01 1 151508772 151508772 C T CGN Missense_Mutation p.S1086F 0.22 deleterious(0) probably_damaging(0.935) TCGA-73-4659-01 1 152280088 152280088 T A FLG Missense_Mutation p.E2425V 0.42 probably_damaging(0.989) TCGA-73-4659-01 1 152733815 152733815 A G KPRP 3'UTR 0.52 TCGA-73-4659-01 1 154241426 154241426 G T UBAP2L Missense_Mutation p.G1055V 0.13 deleterious(0) possibly_damaging(0.838) TCGA-73-4659-01 1 156837895 156837895 G T NTRK1 Splice_Site p.X143_splice 0.40 TCGA-73-4659-01 1 156837896 156837896 G T NTRK1 Silent p.L143L 0.39 TCGA-73-4659-01 1 158326823 158326823 C A CD1E 3'Flank 0.25 TCGA-73-4659-01 1 160771713 160771713 C G LY9 Intron 0.09 TCGA-73-4659-01 1 160851995 160851995 C A ITLN1 Splice_Site p.X53_splice 0.14 TCGA-73-4659-01 1 169511405 169511405 G T F5 Missense_Mutation p.P975T 0.09 deleterious(0.04) possibly_damaging(0.539) TCGA-73-4659-01 1 175304875 175304875 G A TNR Silent p.F1201F 0.22 TCGA-73-4659-01 1 177030287 177030287 C T ASTN1 Missense_Mutation p.G133E 0.10 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-73-4659-01 1 18153051 18153051 G T ACTL8 3'UTR 0.35 TCGA-73-4659-01 1 182026435 182026435 C G ZNF648 Silent p.A237A 0.19 TCGA-73-4659-01 1 183091040 183091040 G T LAMC1 Missense_Mutation p.A725S 0.39 tolerated(0.25) benign(0.004) TCGA-73-4659-01 1 197019870 197019870 G A F13B Silent p.A565A 0.17 TCGA-73-4659-01 1 201035434 201035434 T A CACNA1S Missense_Mutation p.I890F 0.19 tolerated(0.05) probably_damaging(0.989) TCGA-73-4659-01 1 205904837 205904837 G A SLC26A9 Missense_Mutation p.R38C 0.08 tolerated(0.05) benign(0.021) TCGA-73-4659-01 1 214820057 214820057 G A CENPF Missense_Mutation p.G2382S 0.16 benign(0.007) TCGA-73-4659-01 1 224927039 224927039 A T CNIH3 Missense_Mutation p.Y155F 0.16 deleterious(0.03) benign(0.01) TCGA-73-4659-01 1 229636555 229636555 T C NUP133 Missense_Mutation p.D154G 0.17 deleterious(0.02) benign(0.065) TCGA-73-4659-01 1 230804530 230804530 G - COG2 Frame_Shift_Del 0.15 TCGA-73-4659-01 1 23417946 23417946 G C LUZP1 Missense_Mutation p.P937A 0.08 tolerated_low_confidence(0.61) benign(0.026) TCGA-73-4659-01 1 23667394 23667394 T A HNRNPR Silent p.A36A 0.33 TCGA-73-4659-01 1 247876019 247876019 G T OR6F1 Silent p.L13L 0.17 TCGA-73-4659-01 1 248366604 248366604 C A OR2M3 Missense_Mutation p.P79T 0.33 deleterious(0.01) possibly_damaging(0.505) TCGA-73-4659-01 1 248436623 248436623 G T OR2T33 Missense_Mutation p.P165Q 0.10 deleterious(0.03) benign(0.219) TCGA-73-4659-01 1 248458171 248458171 G T OR2T12 Missense_Mutation p.A237D 0.25 deleterious(0) probably_damaging(0.952) TCGA-73-4659-01 1 248525194 248525194 G A OR2T4 Silent p.A104A 0.29 TCGA-73-4659-01 1 248844837 248844837 C A OR14I1 Missense_Mutation p.A257S 0.25 deleterious(0) possibly_damaging(0.707) TCGA-73-4659-01 1 25573174 25573174 C A C1orf63 Missense_Mutation p.R94L 0.20 tolerated(0.13) unknown(0) TCGA-73-4659-01 1 27212601 27212601 C A GPN2 Nonsense_Mutation p.E198* 0.25 TCGA-73-4659-01 1 47284377 47284378 TC - CYP4B1 Frame_Shift_Del p.L479Gfs*73 0.16 TCGA-73-4659-01 1 54665932 54665932 G C MRPL37 Missense_Mutation p.G6R 0.10 tolerated_low_confidence(0.08) benign(0.006) TCGA-73-4659-01 1 78479142 78479142 G C DNAJB4 Missense_Mutation p.G207R 0.18 deleterious(0) probably_damaging(1) TCGA-73-4659-01 1 92327099 92327099 C A TGFBR3 5'UTR 0.30 TCGA-73-4659-01 20 1162053 1162053 C T TMEM74B Silent p.E70E 0.10 TCGA-73-4659-01 20 1559269 1559269 C - RP4-576H24.4 Frame_Shift_Del p.A49Pfs*7 0.27 TCGA-73-4659-01 20 34817356 34817356 A T EPB41L1 3'UTR 0.24 TCGA-73-4659-01 20 35386512 35386512 C A DSN1 Nonsense_Mutation p.E235* 0.20 TCGA-73-4659-01 20 41385102 41385102 C T PTPRT Missense_Mutation p.E287K 0.34 tolerated(0.12) benign(0.13) TCGA-73-4659-01 20 52570044 52570044 A T BCAS1 Missense_Mutation p.L536Q 0.28 deleterious(0) possibly_damaging(0.898) TCGA-73-4659-01 20 55803316 55803316 C A BMP7 Missense_Mutation p.V194F 0.22 deleterious(0) probably_damaging(0.95) TCGA-73-4659-01 20 5903619 5903619 C T CHGB Nonsense_Mutation p.R277* 0.14 TCGA-73-4659-01 20 62076647 62076647 C A KCNQ2 Missense_Mutation p.R153L 0.26 deleterious(0) probably_damaging(1) TCGA-73-4659-01 21 47904726 47904726 A C DIP2A Missense_Mutation p.I50L 0.30 tolerated(0.48) benign(0.011) TCGA-73-4659-01 22 22749706 22749706 C A IGLV7-43 Missense_Mutation p.S77Y 0.15 deleterious(0.01) probably_damaging(0.958) TCGA-73-4659-01 22 23223292 23223292 A G IGLV3-1 Missense_Mutation p.Y21C 0.12 deleterious(0.02) benign(0.149) TCGA-73-4659-01 22 32587072 32587072 C A RFPL2 Missense_Mutation p.G275V 0.25 deleterious(0.01) probably_damaging(1) TCGA-73-4659-01 22 37387601 37387601 C A TEX33 Missense_Mutation p.K222N 0.14 deleterious(0) possibly_damaging(0.607) TCGA-73-4659-01 22 50960275 50960275 C T NCAPH2 Missense_Mutation p.A369V 0.17 tolerated(0.1) possibly_damaging(0.69) TCGA-73-4659-01 2 109086113 109086113 G T GCC2 Missense_Mutation p.V110L 0.13 tolerated(0.21) benign(0.035) TCGA-73-4659-01 2 132237849 132237849 C A TUBA3D Missense_Mutation p.L195M 0.08 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-73-4659-01 2 133541998 133541998 G C NCKAP5 Missense_Mutation p.Q796E 0.17 deleterious(0.01) benign(0.068) TCGA-73-4659-01 2 138163266 138163266 C A THSD7B Missense_Mutation p.Q862K 0.18 deleterious(0.01) benign(0.092) TCGA-73-4659-01 2 139322555 139322555 G T SPOPL Missense_Mutation p.W342C 0.20 tolerated_low_confidence(0.2) benign(0) TCGA-73-4659-01 2 158272582 158272582 C A CYTIP Silent p.G229G 0.22 TCGA-73-4659-01 2 162902123 162902123 C T DPP4 Splice_Site p.X96_splice 0.12 TCGA-73-4659-01 2 168100444 168100444 C A XIRP2 Missense_Mutation p.Q848K 0.24 benign(0.149) TCGA-73-4659-01 2 17896178 17896178 T A SMC6 Silent p.P560P 0.30 TCGA-73-4659-01 2 203764280 203764280 G A WDR12 Silent p.I104I 0.05 TCGA-73-4659-01 2 209315501 209315501 G T PTH2R Missense_Mutation p.W294L 0.14 deleterious(0.01) probably_damaging(0.975) TCGA-73-4659-01 2 228882302 228882302 C A SPHKAP Missense_Mutation p.D1090Y 0.17 deleterious(0) probably_damaging(0.954) TCGA-73-4659-01 2 3685151 3685151 C A COLEC11 Silent p.G91G 0.11 TCGA-73-4659-01 2 50149296 50149296 A G NRXN1 Missense_Mutation p.I1477T 0.15 deleterious(0) probably_damaging(0.948) TCGA-73-4659-01 2 79384741 79384741 G C REG3A Silent p.T139T 0.32 TCGA-73-4659-01 2 96078209 96078209 G T FAHD2A Missense_Mutation p.R238L 0.22 tolerated(0.7) benign(0.09) TCGA-73-4659-01 3 119445030 119445030 C T MAATS1 Missense_Mutation p.P232L 0.43 deleterious(0) probably_damaging(0.999) TCGA-73-4659-01 3 128971533 128971533 A G COPG1 Missense_Mutation p.N80S 0.49 deleterious(0.05) benign(0.007) TCGA-73-4659-01 3 151085496 151085496 G T MED12L Missense_Mutation p.Q1095H 0.37 tolerated(0.78) benign(0.173) TCGA-73-4659-01 3 193855908 193855908 T - HES1 Frame_Shift_Del p.V244Sfs*72 0.25 TCGA-73-4659-01 3 3078942 3078942 A T CNTN4 Silent p.T674T 0.36 TCGA-73-4659-01 3 391086 391086 C AA CHL1 Frame_Shift_Ins p.P298Qfs*62 0.43 TCGA-73-4659-01 3 47374692 47374692 A - KLHL18 Frame_Shift_Del p.R216Gfs*42 0.28 TCGA-73-4659-01 3 87309058 87309058 G T POU1F1 Missense_Mutation p.L314I 0.24 tolerated_low_confidence(0.38) benign(0.007) TCGA-73-4659-01 3 97454809 97454809 C T EPHA6 Missense_Mutation p.P992L 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-73-4659-01 4 100239267 100239267 A T ADH1B Silent p.I65I 0.19 TCGA-73-4659-01 4 184205516 184205516 A T WWC2 Silent p.P1007P 0.13 TCGA-73-4659-01 4 187208902 187208902 G C F11 Missense_Mutation p.K547N 0.12 tolerated(0.21) benign(0.021) TCGA-73-4659-01 4 188924086 188924086 C A ZFP42 Missense_Mutation p.P42H 0.11 deleterious(0) benign(0.017) TCGA-73-4659-01 4 40946967 40946967 C A APBB2 Missense_Mutation p.R320L 0.24 tolerated(0.13) possibly_damaging(0.699) TCGA-73-4659-01 4 47428113 47428113 C T GABRB1 3'UTR 0.32 TCGA-73-4659-01 4 71200872 71200872 C - CABS1 Frame_Shift_Del p.T39Kfs*13 0.19 TCGA-73-4659-01 4 82369318 82369318 C G RASGEF1B Missense_Mutation p.V187L 0.14 tolerated(0.58) benign(0.002) TCGA-73-4659-01 5 112175531 112175531 G A APC Missense_Mutation p.V1414I 0.32 benign(0.007) TCGA-73-4659-01 5 140203040 140203040 C A PCDHA5 Missense_Mutation p.N560K 0.32 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-73-4659-01 5 140263146 140263146 C A PCDHA13 Silent p.G431G 0.26 TCGA-73-4659-01 5 140433455 140433455 T A PCDHB1 Missense_Mutation p.D800E 0.26 tolerated(0.37) benign(0.002) TCGA-73-4659-01 5 140763083 140763083 G T PCDHGA7 Missense_Mutation p.R206L 0.26 deleterious_low_confidence(0) benign(0.004) TCGA-73-4659-01 5 140807640 140807640 G T PCDHGB6 Intron 0.31 TCGA-73-4659-01 5 14331009 14331009 G T TRIO Missense_Mutation p.Q618H 0.21 benign(0.13) TCGA-73-4659-01 5 14331010 14331010 G T TRIO Splice_Site p.X618_splice 0.20 TCGA-73-4659-01 5 148386452 148386452 G T SH3TC2 Missense_Mutation p.Q1223K 0.28 tolerated(1) benign(0.007) TCGA-73-4659-01 5 149264140 149264140 G T PDE6A Missense_Mutation p.S643R 0.24 tolerated(0.08) benign(0.062) TCGA-73-4659-01 5 154394443 154394443 G C KIF4B Missense_Mutation p.V342L 0.25 deleterious(0.04) benign(0.016) TCGA-73-4659-01 5 156378554 156378554 C T TIMD4 Silent p.E216E 0.20 TCGA-73-4659-01 5 156932741 156932741 C A ADAM19 Missense_Mutation p.D356Y 0.32 deleterious(0) probably_damaging(1) TCGA-73-4659-01 5 176295144 176295144 G T UNC5A Missense_Mutation p.M102I 0.24 deleterious(0.01) benign(0.19) TCGA-73-4659-01 5 31323516 31323516 G T CDH6 3'UTR 0.19 TCGA-73-4659-01 5 33561189 33561189 A T ADAMTS12 Silent p.P1356P 0.22 TCGA-73-4659-01 5 33576896 33576896 G C ADAMTS12 Missense_Mutation p.R1079G 0.23 tolerated(0.44) benign(0.016) TCGA-73-4659-01 5 37370996 37370996 C A NUP155 Silent p.R28R 0.20 TCGA-73-4659-01 5 5239824 5239824 G T ADAMTS16 Missense_Mutation p.G770V 0.27 deleterious(0) probably_damaging(0.999) TCGA-73-4659-01 5 75993854 75993856 GAA TAAT IQGAP2 Nonsense_Mutation p.E1417* 0.19 TCGA-73-4659-01 6 10430311 10430311 G A LINC00518 RNA 0.30 TCGA-73-4659-01 6 121769164 121769164 G T GJA1 3'UTR 0.11 TCGA-73-4659-01 6 131190796 131190796 C A EPB41L2 Missense_Mutation p.M838I 0.25 tolerated(0.22) benign(0) TCGA-73-4659-01 6 131190797 131190797 A T EPB41L2 Missense_Mutation p.M838K 0.25 tolerated(0.9) benign(0.007) TCGA-73-4659-01 6 133091382 133091382 C A SLC18B1 3'UTR 0.31 TCGA-73-4659-01 6 133091383 133091383 C A SLC18B1 3'UTR 0.31 TCGA-73-4659-01 6 139609688 139609688 C A TXLNB Nonsense_Mutation p.G117* 0.28 TCGA-73-4659-01 6 147124520 147124520 G T ADGB Intron 0.29 TCGA-73-4659-01 6 150322055 150322055 T C RAET1K RNA 0.26 TCGA-73-4659-01 6 169008863 169008863 C A SMOC2 Missense_Mutation p.T295K 0.19 tolerated(0.15) benign(0.067) TCGA-73-4659-01 6 17637957 17637957 C T NUP153 Missense_Mutation p.A631T 0.11 tolerated(1) benign(0.006) TCGA-73-4659-01 6 28254889 28254889 G C PGBD1 Missense_Mutation p.E196Q 0.36 deleterious_low_confidence(0.05) benign(0.005) TCGA-73-4659-01 6 37336424 37336424 T C RNF8 Silent p.C135C 0.13 TCGA-73-4659-01 6 43251119 43251119 G T TTBK1 Missense_Mutation p.V881L 0.19 benign(0.055) TCGA-73-4659-01 6 47675979 47675979 G T GPR115 Missense_Mutation p.S38I 0.36 tolerated(0.18) benign(0.001) TCGA-73-4659-01 6 52998877 52998877 C G GCM1 Missense_Mutation p.K107N 0.31 deleterious(0) probably_damaging(1) TCGA-73-4659-01 6 56417220 56417220 G A DST Missense_Mutation p.P2834L 0.19 probably_damaging(0.994) TCGA-73-4659-01 6 69349144 69349144 T A BAI3 Missense_Mutation p.Y193N 0.11 tolerated(0.11) probably_damaging(0.979) TCGA-73-4659-01 6 80720675 80720675 G T TTK Splice_Site p.X205_splice 0.18 TCGA-73-4659-01 6 99323305 99323305 T G FBXL4 Missense_Mutation p.Q563P 0.20 deleterious(0.01) benign(0.327) TCGA-73-4659-01 7 100816680 100816680 T A NAT16 Missense_Mutation p.Q145L 0.26 deleterious(0.01) benign(0.308) TCGA-73-4659-01 7 128496821 128496821 C G FLNC Missense_Mutation p.I2469M 0.38 tolerated(0.09) possibly_damaging(0.836) TCGA-73-4659-01 7 130008537 130008537 G A CPA5 3'UTR 0.33 TCGA-73-4659-01 7 151188085 151188085 G A RHEB Missense_Mutation p.T23M 0.07 deleterious(0) benign(0.41) TCGA-73-4659-01 7 23296798 23296798 C T GPNMB Intron 0.38 TCGA-73-4659-01 7 44571766 44571766 C A NPC1L1 Silent p.P820P 0.27 TCGA-73-4659-01 7 5540239 5540239 C A FBXL18 Missense_Mutation p.G554V 0.11 tolerated(0.24) probably_damaging(0.968) TCGA-73-4659-01 7 72658885 72658885 G A GTF2IRD2P1 RNA 0.37 TCGA-73-4659-01 7 8790645 8790645 G T NXPH1 Missense_Mutation p.C21F 0.10 deleterious(0.03) benign(0.005) TCGA-73-4659-01 7 88423561 88423561 C A C7orf62 Missense_Mutation p.M232I 0.23 tolerated(0.19) benign(0.037) TCGA-73-4659-01 7 95439773 95439773 G A DYNC1I1 Missense_Mutation p.E60K 0.28 deleterious(0.01) probably_damaging(0.993) TCGA-73-4659-01 8 100844746 100844746 G T VPS13B Missense_Mutation p.M3185I 0.10 tolerated(0.12) benign(0) TCGA-73-4659-01 8 104897845 104897845 G T RIMS2 Missense_Mutation p.A340S 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-73-4659-01 8 108264187 108264187 C G ANGPT1 Missense_Mutation p.G465R 0.13 tolerated(0.95) probably_damaging(1) TCGA-73-4659-01 8 108913234 108913234 G T RSPO2 3'UTR 0.26 TCGA-73-4659-01 8 11301689 11301689 C A FAM167A Missense_Mutation p.G78W 0.18 deleterious(0.05) benign(0.43) TCGA-73-4659-01 8 131916288 131916288 C T ADCY8 Silent p.G547G 0.25 TCGA-73-4659-01 8 134232987 134232987 G T WISP1 Silent p.R171R 0.20 TCGA-73-4659-01 8 13947932 13947932 G T SGCZ 3'UTR 0.19 TCGA-73-4659-01 8 37729987 37729987 C A RAB11FIP1 Missense_Mutation p.G778V 0.12 tolerated(0.11) possibly_damaging(0.758) TCGA-73-4659-01 8 48690420 48690420 C A PRKDC Nonsense_Mutation p.E3956* 0.20 TCGA-73-4659-01 8 48762047 48762047 C G PRKDC Silent p.L2340L 0.09 TCGA-73-4659-01 8 53028861 53028861 G A ST18 Missense_Mutation p.L993F 0.16 deleterious(0) probably_damaging(0.999) TCGA-73-4659-01 8 6783434 6783434 G T DEFA6 Missense_Mutation p.R42S 0.15 tolerated(0.56) benign(0.042) TCGA-73-4659-01 8 74872008 74872008 T C TCEB1 5'UTR 0.12 TCGA-73-4659-01 9 100139294 100139294 G C CCDC180 3'UTR 0.18 TCGA-73-4659-01 9 120476416 120476416 T A TLR4 Silent p.G670G 0.13 TCGA-73-4659-01 9 120476829 120476829 G T TLR4 Missense_Mutation p.W808L 0.09 tolerated(0.11) probably_damaging(1) TCGA-73-4659-01 9 120476830 120476830 G T TLR4 Missense_Mutation p.W808C 0.09 deleterious(0.01) probably_damaging(1) TCGA-73-4659-01 9 123177335 123177335 C A CDK5RAP2 Missense_Mutation p.G1427V 0.12 tolerated(0.27) probably_damaging(0.994) TCGA-73-4659-01 9 138376778 138376778 T C PPP1R26 Missense_Mutation p.L141P 0.12 deleterious(0) probably_damaging(0.955) TCGA-73-4659-01 9 14746969 14746969 C A FREM1 Silent p.L2030L 0.19 TCGA-73-4659-01 9 19450737 19450737 A G ACER2 3'UTR 0.14 TCGA-73-4659-01 9 23701601 23701601 G A ELAVL2 Silent p.G163G 0.20 TCGA-73-4659-01 9 35045097 35045097 G T C9orf131 Missense_Mutation p.G824V 0.20 tolerated(0.09) possibly_damaging(0.483) TCGA-73-4659-01 9 39888295 39888295 G A SPATA31A2 Missense_Mutation p.V428M 0.26 deleterious(0.01) possibly_damaging(0.891) TCGA-73-4659-01 9 79267519 79267519 C A PRUNE2 Missense_Mutation p.D2813Y 0.11 deleterious(0) probably_damaging(1) TCGA-73-4659-01 9 8492918 8492918 G T PTPRD Missense_Mutation p.T804K 0.08 deleterious(0) benign(0.197) TCGA-73-4659-01 9 893993 893993 C A DMRT1 Missense_Mutation p.S207Y 0.33 deleterious(0) possibly_damaging(0.886) TCGA-73-4659-01 X 125685797 125685797 C T DCAF12L1 Silent p.V265V 0.52 TCGA-73-4659-01 X 129206319 129206319 G A ELF4 Silent p.A138A 0.23 TCGA-73-4659-01 X 13753440 13753440 A G OFD1 Missense_Mutation p.D29G 0.51 deleterious(0.02) probably_damaging(0.941) TCGA-73-4659-01 X 21875364 21875364 C G YY2 Silent p.V254V 0.50 TCGA-73-4662-01 10 105883551 105883553 TTA - SFR1 In_Frame_Del p.L72_K73delinsQ 0.16 TCGA-73-4662-01 10 22022812 22022812 A G MLLT10 Missense_Mutation p.N871S 0.37 deleterious(0.01) benign(0.111) TCGA-73-4662-01 10 23297778 23297778 T A ARMC3 Missense_Mutation p.S655T 0.32 tolerated(0.13) probably_damaging(0.955) TCGA-73-4662-01 10 25887711 25887711 T A GPR158 Silent p.P1052P 0.20 TCGA-73-4662-01 10 32573955 32573955 G A EPC1 Missense_Mutation p.S472L 0.25 deleterious(0) benign(0.184) TCGA-73-4662-01 10 38120629 38120629 C A ZNF248 Missense_Mutation p.A552S 0.51 tolerated(0.25) benign(0.129) TCGA-73-4662-01 10 395293 395293 G A DIP2C Silent p.H1029H 0.47 TCGA-73-4662-01 10 7618929 7618929 C T ITIH5 Missense_Mutation p.D489N 0.14 tolerated(0.42) benign(0.069) TCGA-73-4662-01 10 8111435 8111435 G T GATA3 Splice_Site p.X309_splice 0.09 TCGA-73-4662-01 10 96291100 96291100 G A TBC1D12 Missense_Mutation p.M714I 0.24 deleterious(0) benign(0.391) TCGA-73-4662-01 11 100211835 100211835 A C CNTN5 Missense_Mutation p.Q976H 0.04 deleterious(0) possibly_damaging(0.724) TCGA-73-4662-01 11 129794872 129794872 G A PRDM10 Missense_Mutation p.R599C 0.24 deleterious(0.02) probably_damaging(0.997) TCGA-73-4662-01 11 18044391 18044391 C T TPH1 Missense_Mutation p.V372I 0.35 tolerated(0.32) benign(0.037) TCGA-73-4662-01 11 193795 193795 G T SCGB1C1 Nonsense_Mutation p.E47* 0.10 TCGA-73-4662-01 11 34668199 34668199 T C EHF Missense_Mutation p.L126P 0.29 deleterious(0.01) probably_damaging(1) TCGA-73-4662-01 11 45307669 45307669 A G SYT13 Silent p.C30C 0.25 TCGA-73-4662-01 11 46407047 46407047 A T CHRM4 Missense_Mutation p.V354E 0.16 tolerated(0.31) possibly_damaging(0.568) TCGA-73-4662-01 11 46894892 46894892 C - LRP4 Intron 0.39 TCGA-73-4662-01 11 48285600 48285600 A G OR4X1 Missense_Mutation p.Y63C 0.05 deleterious(0.05) benign(0.009) TCGA-73-4662-01 11 48328454 48328454 C A OR4S1 Nonsense_Mutation p.S227* 0.22 TCGA-73-4662-01 11 4928721 4928721 G T OR51A7 Missense_Mutation p.G41V 0.30 deleterious(0) probably_damaging(0.997) TCGA-73-4662-01 11 49974727 49974727 C A OR4C13 Silent p.P251P 0.19 TCGA-73-4662-01 11 5020560 5020561 - T OR51L1 Frame_Shift_Ins p.L117Ffs*7 0.33 TCGA-73-4662-01 11 55110823 55110823 C A OR4A16 Silent p.G49G 0.33 TCGA-73-4662-01 11 55658932 55658932 T A TRIM51 Missense_Mutation p.S395T 0.26 deleterious(0.03) probably_damaging(0.952) TCGA-73-4662-01 11 56128013 56128013 T A OR8J1 Nonsense_Mutation p.C97* 0.24 TCGA-73-4662-01 11 6023636 6023636 G A OR56A4 Missense_Mutation p.T248I 0.40 tolerated(0.13) benign(0.222) TCGA-73-4662-01 11 60658726 60658726 C T PRPF19 Missense_Mutation p.G476D 0.19 tolerated(0.07) benign(0.013) TCGA-73-4662-01 11 61544847 61544847 G T MYRF Missense_Mutation p.D568Y 0.32 deleterious(0) probably_damaging(0.921) TCGA-73-4662-01 11 763398 763398 C T TALDO1 Silent p.F172F 0.15 TCGA-73-4662-01 12 101876581 101876581 G - SPIC Frame_Shift_Del p.D75Tfs*15 0.17 TCGA-73-4662-01 12 10766174 10766174 C A MAGOHB 5'UTR 0.18 TCGA-73-4662-01 12 110574609 110574609 G A IFT81 Missense_Mutation p.R242K 0.27 tolerated(0.09) possibly_damaging(0.646) TCGA-73-4662-01 12 115120699 115120699 G T TBX3 Missense_Mutation p.P103T 0.31 deleterious(0) probably_damaging(0.998) TCGA-73-4662-01 12 122958283 122958283 C A ZCCHC8 Missense_Mutation p.V629F 0.05 tolerated(0.06) benign(0.232) TCGA-73-4662-01 12 130841526 130841526 G T PIWIL1 Missense_Mutation p.V490F 0.16 deleterious(0.01) benign(0.248) TCGA-73-4662-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.44 deleterious(0.04) probably_damaging(0.993) TCGA-73-4662-01 12 33529829 33529829 C G SYT10 Missense_Mutation p.G503A 0.35 tolerated(0.36) benign(0.444) TCGA-73-4662-01 12 50045755 50045755 G A FMNL3 Missense_Mutation p.P522S 0.22 tolerated(0.46) probably_damaging(0.994) TCGA-73-4662-01 12 56489093 56489093 G T ERBB3 Missense_Mutation p.G638C 0.33 deleterious(0.02) possibly_damaging(0.495) TCGA-73-4662-01 12 56629465 56629465 G A SLC39A5 Missense_Mutation p.R309Q 0.03 tolerated(0.21) benign(0.069) TCGA-73-4662-01 12 63974596 63974596 G T DPY19L2 Silent p.R582R 0.36 TCGA-73-4662-01 12 7586276 7586276 C A CD163L1 Nonsense_Mutation p.E47* 0.16 TCGA-73-4662-01 12 77424063 77424063 C G E2F7 Missense_Mutation p.D478H 0.29 deleterious(0.02) possibly_damaging(0.527) TCGA-73-4662-01 12 8374359 8374359 C A FAM90A1 3'UTR 0.25 TCGA-73-4662-01 13 20221403 20221403 G T MPHOSPH8 Missense_Mutation p.G397V 0.46 tolerated_low_confidence(0.16) benign(0.004) TCGA-73-4662-01 13 32907276 32907276 G T BRCA2 Missense_Mutation p.C554F 0.47 deleterious(0.04) possibly_damaging(0.595) TCGA-73-4662-01 14 105412026 105412026 G T AHNAK2 Missense_Mutation p.D3254E 0.17 benign(0.027) TCGA-73-4662-01 14 105412521 105412521 G T AHNAK2 Missense_Mutation p.D3089E 0.12 benign(0.042) TCGA-73-4662-01 14 39620949 39620949 C - TRAPPC6B Splice_Site p.X149_splice 0.11 TCGA-73-4662-01 14 56138320 56138320 C T KTN1 Missense_Mutation p.H1129Y 0.06 tolerated(0.15) benign(0.018) TCGA-73-4662-01 15 25415727 25415727 G T SNORD115-3 5'Flank 0.52 TCGA-73-4662-01 15 25420002 25420002 C T SNORD115-3 5'Flank 0.19 TCGA-73-4662-01 15 35045068 35045068 C A GJD2 Nonsense_Mutation p.E193* 0.48 TCGA-73-4662-01 15 42109166 42109166 G T MAPKBP1 Silent p.G554G 0.29 TCGA-73-4662-01 15 44806806 44806806 G C CTDSPL2 Missense_Mutation p.R327T 0.24 deleterious(0) probably_damaging(0.988) TCGA-73-4662-01 15 48063372 48063372 G A SEMA6D Missense_Mutation p.R871H 0.24 tolerated(0.1) possibly_damaging(0.514) TCGA-73-4662-01 15 65621915 65621915 A G IGDCC3 Missense_Mutation p.V673A 0.35 tolerated(0.18) benign(0.025) TCGA-73-4662-01 16 20491954 20491954 G A ACSM2A Silent p.R447R 0.17 TCGA-73-4662-01 16 20554525 20554525 C T ACSM2B Silent p.R447R 0.07 TCGA-73-4662-01 16 29096541 29096541 G T RRN3P2 RNA 0.19 TCGA-73-4662-01 16 31498858 31498858 C T SLC5A2 Silent p.H221H 0.15 TCGA-73-4662-01 16 46764575 46764575 G C MYLK3 Missense_Mutation p.R500G 0.53 deleterious(0.03) probably_damaging(0.997) TCGA-73-4662-01 16 70896074 70896074 C A HYDIN Missense_Mutation p.G3885V 0.32 benign(0.001) TCGA-73-4662-01 16 72159911 72159911 T G PMFBP1 Missense_Mutation p.K737Q 0.45 tolerated(0.24) benign(0.263) TCGA-73-4662-01 16 82068949 82068949 G T HSD17B2 5'UTR 0.50 TCGA-73-4662-01 16 830202 830202 G T MSLNL Missense_Mutation p.P267T 0.16 probably_damaging(0.958) TCGA-73-4662-01 17 3524528 3524528 T A SHPK Intron 0.47 TCGA-73-4662-01 17 38179414 38179414 G A MED24 Silent p.G740G 0.39 TCGA-73-4662-01 17 39340604 39340604 T A KRTAP4-1 3'UTR 0.40 TCGA-73-4662-01 17 39778677 39778677 C A KRT17 Missense_Mutation p.R201I 0.39 deleterious(0) probably_damaging(0.973) TCGA-73-4662-01 17 42825784 42825784 C T DBF4B Silent p.P380P 0.16 TCGA-73-4662-01 17 57968330 57968330 C A TUBD1 Missense_Mutation p.G12C 0.30 deleterious(0) probably_damaging(1) TCGA-73-4662-01 17 65082999 65082999 G C HELZ Missense_Mutation p.Q1814E 0.15 deleterious_low_confidence(0.03) unknown(0) TCGA-73-4662-01 17 73832735 73832735 C T UNC13D Missense_Mutation p.G406S 0.27 tolerated(0.1) probably_damaging(1) TCGA-73-4662-01 17 73870695 73870695 G A TRIM47 Missense_Mutation p.R596C 0.27 tolerated_low_confidence(0.1) benign(0.032) TCGA-73-4662-01 17 78078846 78078846 G T GAA Missense_Mutation p.R154L 0.32 tolerated(0.09) benign(0.35) TCGA-73-4662-01 17 79165040 79165040 G T AZI1 Silent p.A906A 0.14 TCGA-73-4662-01 18 20577615 20577615 A G RBBP8 Silent p.T687T 0.50 TCGA-73-4662-01 18 2656197 2656197 G T SMCHD1 Silent p.G41G 0.36 TCGA-73-4662-01 18 47800612 47800612 C A MBD1 Missense_Mutation p.G364C 0.45 deleterious(0) probably_damaging(1) TCGA-73-4662-01 18 63477091 63477091 G T CDH7 Missense_Mutation p.R121L 0.11 tolerated(0.08) probably_damaging(0.928) TCGA-73-4662-01 18 6986344 6986344 G T LAMA1 Missense_Mutation p.A1724D 0.26 tolerated(0.07) probably_damaging(0.983) TCGA-73-4662-01 18 72228242 72228242 C T CNDP1 Missense_Mutation p.T152M 0.39 deleterious(0.01) possibly_damaging(0.584) TCGA-73-4662-01 19 10421173 10421173 T C FDX1L Missense_Mutation p.K181E 0.06 tolerated(0.14) benign(0.235) TCGA-73-4662-01 19 10421195 10421195 G C FDX1L Missense_Mutation p.F173L 0.08 deleterious(0) possibly_damaging(0.562) TCGA-73-4662-01 19 10665777 10665777 T G KRI1 Silent p.S595S 0.06 TCGA-73-4662-01 19 15164396 15164396 G A CASP14 Missense_Mutation p.R44Q 0.20 tolerated(1) benign(0.002) TCGA-73-4662-01 19 15360069 15360072 ATTA - BRD4 Intron 0.20 TCGA-73-4662-01 19 20728561 20728561 A C ZNF737 Missense_Mutation p.Y150D 0.21 deleterious(0.04) probably_damaging(0.965) TCGA-73-4662-01 19 22605017 22605017 G T ZNF98 Missense_Mutation p.P4T 0.12 tolerated_low_confidence(0.22) benign(0) TCGA-73-4662-01 19 3525945 3525945 C A FZR1 Missense_Mutation p.P50H 0.13 deleterious(0) possibly_damaging(0.896) TCGA-73-4662-01 19 39907024 39907024 C T PLEKHG2 Silent p.A172A 0.08 TCGA-73-4662-01 19 43262242 43262242 G T PSG8 Silent p.V207V 0.44 TCGA-73-4662-01 19 44832283 44832283 G A ZNF112 Missense_Mutation p.A682V 0.05 tolerated(0.48) possibly_damaging(0.876) TCGA-73-4662-01 19 5210581 5210581 C A PTPRS Missense_Mutation p.A1796S 0.19 tolerated(0.16) benign(0.3) TCGA-73-4662-01 19 52497466 52497466 T C ZNF615 Missense_Mutation p.Y299C 0.03 deleterious(0) possibly_damaging(0.897) TCGA-73-4662-01 19 54782221 54782221 C T LILRB2 Missense_Mutation p.S384N 0.17 deleterious(0.02) possibly_damaging(0.9) TCGA-73-4662-01 19 55814218 55814218 C A BRSK1 Silent p.R337R 0.35 TCGA-73-4662-01 19 56539603 56539603 G T NLRP5 Missense_Mutation p.W668C 0.42 tolerated(0.07) possibly_damaging(0.643) TCGA-73-4662-01 19 59060467 59060467 G C TRIM28 Missense_Mutation p.V508L 0.48 tolerated(0.82) benign(0.426) TCGA-73-4662-01 19 6496231 6496231 G A TUBB4A Silent p.G93G 0.49 TCGA-73-4662-01 19 9066581 9066581 C G MUC16 Missense_Mutation p.E6955D 0.08 unknown(0) TCGA-73-4662-01 1 117150688 117150688 G T IGSF3 Silent p.L366L 0.08 TCGA-73-4662-01 1 119467339 119467339 G T TBX15 Missense_Mutation p.T102N 0.49 deleterious(0.03) possibly_damaging(0.896) TCGA-73-4662-01 1 150484952 150484952 C T ECM1 Missense_Mutation p.P430L 0.21 deleterious(0) probably_damaging(1) TCGA-73-4662-01 1 151280153 151280153 T C PI4KB Missense_Mutation p.N372S 0.45 deleterious(0) probably_damaging(1) TCGA-73-4662-01 1 152286049 152286049 G A FLG Missense_Mutation p.S438L 0.23 possibly_damaging(0.884) TCGA-73-4662-01 1 152636816 152636816 C G LCE2D Missense_Mutation p.R79G 0.50 tolerated_low_confidence(0.59) unknown(0) TCGA-73-4662-01 1 158597480 158597480 C G SPTA1 Missense_Mutation p.D1867H 0.47 deleterious(0) probably_damaging(1) TCGA-73-4662-01 1 159888618 159888618 C A TAGLN2 Missense_Mutation p.G191V 0.25 deleterious(0) possibly_damaging(0.903) TCGA-73-4662-01 1 159888619 159888619 C A TAGLN2 Missense_Mutation p.G191C 0.25 deleterious(0.02) possibly_damaging(0.534) TCGA-73-4662-01 1 167097069 167097069 C A DUSP27 Missense_Mutation p.R901S 0.22 tolerated(0.29) benign(0.015) TCGA-73-4662-01 1 17292317 17292317 T C CROCC Missense_Mutation p.L1502P 0.19 possibly_damaging(0.883) TCGA-73-4662-01 1 175336417 175336417 A T TNR Silent p.T660T 0.16 TCGA-73-4662-01 1 186823505 186823505 T A PLA2G4A Missense_Mutation p.Y7N 0.11 deleterious_low_confidence(0.01) benign(0.235) TCGA-73-4662-01 1 201184736 201184736 C T IGFN1 Missense_Mutation p.P3022L 0.18 possibly_damaging(0.616) TCGA-73-4662-01 1 203134690 203134690 G C ADORA1 Missense_Mutation p.V215L 0.15 tolerated(0.79) benign(0.011) TCGA-73-4662-01 1 203194938 203194938 G A CHIT1 Missense_Mutation p.A39V 0.12 deleterious(0.04) benign(0.089) TCGA-73-4662-01 1 211192154 211192154 G C KCNH1 Missense_Mutation p.P335A 0.04 tolerated_low_confidence(0.47) benign(0.003) TCGA-73-4662-01 1 216850421 216850421 G A ESRRG Nonsense_Mutation p.Q162* 0.17 TCGA-73-4662-01 1 220791808 220791808 G T MARK1 Nonsense_Mutation p.E237* 0.41 TCGA-73-4662-01 1 2234776 2234776 C T SKI Missense_Mutation p.S383F 0.32 tolerated(0.31) probably_damaging(0.998) TCGA-73-4662-01 1 238090339 238090339 C A RP11-193H5.1 RNA 0.45 TCGA-73-4662-01 1 24201958 24201958 C T CNR2 Silent p.E50E 0.09 TCGA-73-4662-01 1 244217323 244217323 G T ZBTB18 Missense_Mutation p.A83S 0.58 deleterious(0) probably_damaging(0.999) TCGA-73-4662-01 1 246714570 246714570 T C TFB2M Missense_Mutation p.Y247C 0.24 deleterious(0) probably_damaging(1) TCGA-73-4662-01 1 247737774 247737774 A T GCSAML 3'UTR 0.15 TCGA-73-4662-01 1 247769097 247769097 C A OR2G3 Missense_Mutation p.D70E 0.19 deleterious(0) probably_damaging(0.977) TCGA-73-4662-01 1 248402862 248402862 T G OR2M4 Missense_Mutation p.V211G 0.05 deleterious(0.01) probably_damaging(0.974) TCGA-73-4662-01 1 248790027 248790027 G A OR2T11 Missense_Mutation p.R135C 0.05 tolerated(0.11) benign(0) TCGA-73-4662-01 1 32197007 32197007 C A BAI2 Missense_Mutation p.E1258D 0.36 tolerated(1) probably_damaging(0.99) TCGA-73-4662-01 1 39827187 39827187 G - MACF1 Frame_Shift_Del p.Q2141Hfs*9 0.11 TCGA-73-4662-01 1 62740219 62740219 G T KANK4 Missense_Mutation p.A186D 0.34 tolerated(0.62) benign(0.014) TCGA-73-4662-01 1 70226072 70226072 C A LRRC7 Missense_Mutation p.P62H 0.51 deleterious(0) possibly_damaging(0.907) TCGA-73-4662-01 1 85736391 85736391 T C BCL10 Missense_Mutation p.I86V 0.10 deleterious(0.02) possibly_damaging(0.566) TCGA-73-4662-01 20 20246079 20246079 T G C20orf26 Intron 0.04 TCGA-73-4662-01 20 25199194 25199194 G T ENTPD6 Missense_Mutation p.G296V 0.30 deleterious(0) probably_damaging(1) TCGA-73-4662-01 20 30584719 30584719 G A XKR7 Missense_Mutation p.G400D 0.13 deleterious(0.02) probably_damaging(0.944) TCGA-73-4662-01 20 47770537 47770537 C A STAU1 Missense_Mutation p.V93F 0.56 tolerated(0.08) possibly_damaging(0.783) TCGA-73-4662-01 20 54573585 54573585 T A CBLN4 3'UTR 0.54 TCGA-73-4662-01 20 60927018 60927018 G T LAMA5 Missense_Mutation p.L269M 0.69 probably_damaging(1) TCGA-73-4662-01 21 28337760 28337760 C A ADAMTS5 Missense_Mutation p.K317N 0.06 deleterious(0) probably_damaging(0.99) TCGA-73-4662-01 21 31743890 31743890 C T KRTAP13-2 3'UTR 0.44 TCGA-73-4662-01 21 32638630 32638630 G T TIAM1 Missense_Mutation p.P220Q 0.54 deleterious_low_confidence(0.01) benign(0.089) TCGA-73-4662-01 21 43319393 43319393 C A C2CD2 Missense_Mutation p.A547S 0.38 tolerated(0.82) benign(0.031) TCGA-73-4662-01 21 46067170 46067170 C A KRTAP10-11 Silent p.S265S 0.60 TCGA-73-4662-01 21 47655246 47655246 G A MCM3AP Missense_Mutation p.S1960L 0.60 deleterious(0) probably_damaging(0.966) TCGA-73-4662-01 22 22890449 22890449 T C PRAME 3'UTR 0.25 TCGA-73-4662-01 22 22893228 22893228 T A PRAME Missense_Mutation p.D102V 0.19 deleterious(0) possibly_damaging(0.813) TCGA-73-4662-01 2 106013203 106013203 G C FHL2 Intron 0.33 TCGA-73-4662-01 2 11332269 11332273 ATTAC - ROCK2 Splice_Site p.X1388_splice 0.31 TCGA-73-4662-01 2 120849214 120849214 C G EPB41L5 Missense_Mutation p.S376C 0.43 deleterious(0) probably_damaging(0.999) TCGA-73-4662-01 2 124783218 124783218 C G CNTNAP5 5'UTR 0.34 TCGA-73-4662-01 2 131103505 131103505 G C IMP4 Missense_Mutation p.R198P 0.35 deleterious(0) probably_damaging(0.993) TCGA-73-4662-01 2 131127758 131127758 C T PTPN18 Silent p.H228H 0.19 TCGA-73-4662-01 2 135745193 135745193 A T MAP3K19 Missense_Mutation p.S417T 0.18 tolerated(0.08) benign(0.445) TCGA-73-4662-01 2 141986802 141986802 G T LRP1B Missense_Mutation p.A267E 0.16 benign(0) TCGA-73-4662-01 2 175431778 175431778 A C WIPF1 Intron 0.12 TCGA-73-4662-01 2 178879143 178879143 C A PDE11A Missense_Mutation p.K319N 0.15 deleterious(0.01) probably_damaging(0.987) TCGA-73-4662-01 2 179395969 179395969 T C TTN Missense_Mutation p.T35125A 0.37 TCGA-73-4662-01 2 179614294 179614294 T G TTN Intron 0.08 TCGA-73-4662-01 2 18113214 18113214 A G KCNS3 Silent p.L313L 0.06 TCGA-73-4662-01 2 189873816 189873816 C A COL3A1 Missense_Mutation p.T1231N 0.19 unknown(0) TCGA-73-4662-01 2 215862467 215862467 A T ABCA12 Silent p.A1082A 0.08 TCGA-73-4662-01 2 220045854 220045854 G T FAM134A Missense_Mutation p.E237D 0.14 deleterious(0.01) possibly_damaging(0.764) TCGA-73-4662-01 2 220434961 220434961 C A OBSL1 Missense_Mutation p.V332L 0.38 tolerated(0.05) probably_damaging(0.995) TCGA-73-4662-01 2 233322813 233322813 A G ALPI Missense_Mutation p.N321S 0.25 deleterious(0.02) benign(0.372) TCGA-73-4662-01 2 234106843 234106843 C T INPP5D Silent p.T920T 0.11 TCGA-73-4662-01 2 238234302 238234302 G A COL6A3 Missense_Mutation p.P3132S 0.13 unknown(0) TCGA-73-4662-01 2 23980357 23980357 A T ATAD2B Missense_Mutation p.C1337S 0.25 tolerated(0.19) benign(0.01) TCGA-73-4662-01 2 3673659 3673659 C T COLEC11 Intron 0.28 TCGA-73-4662-01 2 44023920 44023920 G C DYNC2LI1 Missense_Mutation p.G214R 0.28 deleterious(0) probably_damaging(0.988) TCGA-73-4662-01 2 44023921 44023921 G T DYNC2LI1 Missense_Mutation p.G214V 0.27 deleterious(0) possibly_damaging(0.834) TCGA-73-4662-01 2 54120044 54120044 T A PSME4 Missense_Mutation p.L1364F 0.34 deleterious(0.01) possibly_damaging(0.682) TCGA-73-4662-01 2 55561797 55561797 C A CCDC88A Missense_Mutation p.M720I 0.24 tolerated(0.22) benign(0.001) TCGA-73-4662-01 2 70906031 70906031 A T ADD2 Missense_Mutation p.S396R 0.21 tolerated(0.14) benign(0.065) TCGA-73-4662-01 2 71043658 71043658 G C CLEC4F Missense_Mutation p.I285M 0.32 tolerated(0.27) benign(0.038) TCGA-73-4662-01 3 111718394 111718394 T C TAGLN3 Missense_Mutation p.I42T 0.23 tolerated(0.06) benign(0.102) TCGA-73-4662-01 3 114014579 114014579 T A TIGIT Missense_Mutation p.D83E 0.21 tolerated(1) benign(0.001) TCGA-73-4662-01 3 130682828 130682828 G A ATP2C1 Missense_Mutation p.A339T 0.21 deleterious(0) probably_damaging(0.995) TCGA-73-4662-01 3 135721504 135721504 A G PPP2R3A Silent p.L388L 0.36 TCGA-73-4662-01 3 13659609 13659609 T A FBLN2 Missense_Mutation p.L588Q 0.37 deleterious(0.03) probably_damaging(0.979) TCGA-73-4662-01 3 137881363 137881363 G A DBR1 Missense_Mutation p.L335F 0.18 tolerated(0.08) benign(0.052) TCGA-73-4662-01 3 97356765 97356765 G A EPHA6 Missense_Mutation p.G875S 0.22 deleterious(0.01) probably_damaging(1) TCGA-73-4662-01 4 114254323 114254323 C A ANK2 Missense_Mutation p.T1113N 0.49 probably_damaging(0.924) TCGA-73-4662-01 4 160275067 160275067 G T RAPGEF2 Missense_Mutation p.R1346L 0.53 deleterious_low_confidence(0) possibly_damaging(0.901) TCGA-73-4662-01 4 46252306 46252306 A T GABRA2 3'UTR 0.20 TCGA-73-4662-01 4 47322141 47322141 C T GABRB1 Intron 0.17 TCGA-73-4662-01 4 47408881 47408881 G C GABRB1 Missense_Mutation p.G340R 0.19 tolerated(0.54) benign(0.009) TCGA-73-4662-01 4 47565645 47565645 A T ATP10D Missense_Mutation p.I906L 0.13 deleterious(0) possibly_damaging(0.883) TCGA-73-4662-01 4 57217624 57217624 C T AASDH Splice_Site p.X526_splice 0.38 TCGA-73-4662-01 4 7857263 7857263 G A AFAP1 Silent p.S88S 0.13 TCGA-73-4662-01 4 88583361 88583361 T C DMP1 Missense_Mutation p.I144T 0.37 tolerated(1) benign(0.002) TCGA-73-4662-01 4 96762282 96762282 C A PDHA2 Silent p.L327L 0.45 TCGA-73-4662-01 5 10411648 10411648 G A MARCH6 Missense_Mutation p.R632K 0.22 tolerated(0.12) benign(0.053) TCGA-73-4662-01 5 11159798 11159798 G T CTNND2 Silent p.T683T 0.15 TCGA-73-4662-01 5 140235739 140235739 G A PCDHA10 Missense_Mutation p.E36K 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-73-4662-01 5 140554630 140554630 C G PCDHB7 Missense_Mutation p.S738R 0.17 deleterious_low_confidence(0.03) benign(0.235) TCGA-73-4662-01 5 140562314 140562314 C A PCDHB16 Silent p.S60S 0.05 TCGA-73-4662-01 5 140573632 140573632 C A PCDHB10 Missense_Mutation p.L503M 0.04 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-73-4662-01 5 140720308 140720308 G T PCDHGA2 Missense_Mutation p.K590N 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.651) TCGA-73-4662-01 5 149008426 149008426 G A ARHGEF37 Missense_Mutation p.S572N 0.23 tolerated(0.24) benign(0.003) TCGA-73-4662-01 5 161128675 161128675 T G GABRA6 Missense_Mutation p.Y420D 0.49 deleterious(0) probably_damaging(0.997) TCGA-73-4662-01 5 171765673 171765673 C T SH3PXD2B Silent p.L812L 0.10 TCGA-73-4662-01 5 17354055 17354055 C A CTD-2139B15.2 RNA 0.12 TCGA-73-4662-01 5 179996154 179996154 G T CNOT6 Missense_Mutation p.A358S 0.12 tolerated(0.12) possibly_damaging(0.531) TCGA-73-4662-01 5 36183971 36183971 G T SKP2 3'UTR 0.15 TCGA-73-4662-01 5 64875260 64875260 G A PPWD1 Silent p.R390R 0.09 TCGA-73-4662-01 6 114379241 114379241 C A HS3ST5 Missense_Mutation p.G74V 0.19 deleterious(0.03) benign(0.298) TCGA-73-4662-01 6 12125456 12125456 G T HIVEP1 Missense_Mutation p.G1810C 0.34 deleterious(0) possibly_damaging(0.904) TCGA-73-4662-01 6 126080924 126080924 G T HEY2 Missense_Mutation p.W330C 0.36 deleterious(0) probably_damaging(0.999) TCGA-73-4662-01 6 142468431 142468431 G T VTA1 Missense_Mutation p.A3S 0.19 tolerated_low_confidence(0.51) unknown(0) TCGA-73-4662-01 6 146673535 146673535 G T GRM1 Missense_Mutation p.D446Y 0.34 deleterious(0) probably_damaging(0.997) TCGA-73-4662-01 6 151869438 151869438 G T CCDC170 Splice_Site p.X197_splice 0.38 TCGA-73-4662-01 6 169641917 169641917 G T THBS2 Silent p.V277V 0.15 TCGA-73-4662-01 6 47682229 47682229 G T GPR115 Missense_Mutation p.L416F 0.29 deleterious(0) probably_damaging(1) TCGA-73-4662-01 6 4892352 4892352 G T CDYL Missense_Mutation p.V144L 0.32 tolerated(0.29) possibly_damaging(0.629) TCGA-73-4662-01 6 66063453 66063453 G T EYS Missense_Mutation p.L453I 0.17 tolerated(0.23) benign(0.014) TCGA-73-4662-01 6 84233922 84233922 C A PRSS35 Silent p.V254V 0.49 TCGA-73-4662-01 7 11501720 11501720 G T THSD7A Missense_Mutation p.P807T 0.35 tolerated(0.06) probably_damaging(0.934) TCGA-73-4662-01 7 121682660 121682660 A C PTPRZ1 Splice_Site p.X1934_splice 0.17 TCGA-73-4662-01 7 122338100 122338100 C A RNF133 Silent p.G291G 0.55 TCGA-73-4662-01 7 122635134 122635134 C T TAS2R16 Silent p.L185L 0.06 TCGA-73-4662-01 7 15599801 15599801 C A AGMO Silent p.T74T 0.28 TCGA-73-4662-01 7 156468537 156468537 T A RNF32 Missense_Mutation p.W278R 0.53 deleterious(0) probably_damaging(0.999) TCGA-73-4662-01 7 21745109 21745109 G T DNAH11 Missense_Mutation p.R2174L 0.17 probably_damaging(0.917) TCGA-73-4662-01 7 23750113 23750113 C T STK31 Intron 0.25 TCGA-73-4662-01 7 4900091 4900091 C A PAPOLB Nonsense_Mutation p.E450* 0.41 TCGA-73-4662-01 8 113651094 113651094 G A CSMD3 Silent p.D1119D 0.23 TCGA-73-4662-01 8 12040325 12040325 G T FAM86B1 3'UTR 0.30 TCGA-73-4662-01 8 145010135 145010143 CTTGGCCGT - PLEC In_Frame_Del p.T296_K298del 0.41 TCGA-73-4662-01 8 29023195 29023195 G A KIF13B Missense_Mutation p.T418M 0.08 deleterious(0) probably_damaging(0.999) TCGA-73-4662-01 8 73480420 73480420 G C KCNB2 Missense_Mutation p.E151Q 0.31 deleterious(0) probably_damaging(0.969) TCGA-73-4662-01 8 77617092 77617092 C A ZFHX4 Missense_Mutation p.P257T 0.35 possibly_damaging(0.803) TCGA-73-4662-01 8 77617093 77617093 C G ZFHX4 Missense_Mutation p.P257R 0.35 possibly_damaging(0.904) TCGA-73-4662-01 9 107288692 107288692 G T OR13C4 Missense_Mutation p.L267I 0.12 tolerated_low_confidence(0.13) benign(0.021) TCGA-73-4662-01 9 113265485 113265485 G A SVEP1 Missense_Mutation p.P439L 0.12 possibly_damaging(0.827) TCGA-73-4662-01 9 130479235 130479235 G T TTC16 Missense_Mutation p.S44I 0.11 tolerated(0.08) benign(0.071) TCGA-73-4662-01 9 15472678 15472678 T G PSIP1 Missense_Mutation p.E310A 0.23 tolerated(0.06) benign(0.197) TCGA-73-4662-01 9 16437347 16437347 A T BNC2 Missense_Mutation p.I282K 0.09 deleterious(0) probably_damaging(0.997) TCGA-73-4662-01 9 19550264 19550264 G T SLC24A2 Silent p.T450T 0.15 TCGA-73-4662-01 9 35710595 35710595 G A TLN1 Missense_Mutation p.S1430L 0.31 deleterious(0) probably_damaging(0.977) TCGA-73-4662-01 9 4286471 4286471 A T GLIS3 5'UTR 0.24 TCGA-73-4662-01 9 86503413 86503413 C G KIF27 Missense_Mutation p.E692Q 0.38 tolerated(0.57) benign(0.002) TCGA-73-4662-01 9 98209232 98209232 C A PTCH1 Nonsense_Mutation p.E1436* 0.38 TCGA-73-4662-01 X 100403112 100403112 C A CENPI Missense_Mutation p.P686T 0.16 deleterious(0) probably_damaging(0.911) TCGA-73-4662-01 X 100403113 100403113 C A CENPI Missense_Mutation p.P686H 0.16 deleterious(0) possibly_damaging(0.708) TCGA-73-4662-01 X 100613365 100613365 G T BTK Nonsense_Mutation p.Y345* 0.19 TCGA-73-4662-01 X 102528926 102528926 C - TCEAL5 Frame_Shift_Del p.G189Efs*2 0.20 TCGA-73-4662-01 X 102864328 102864328 A G TCEAL3 Silent p.R112R 0.17 TCGA-73-4662-01 X 103080712 103080712 C A RAB9B Translation_Start_Site p.M1? 0.17 deleterious(0.02) probably_damaging(0.968) TCGA-73-4662-01 X 103220240 103220240 G T TMSB15B 3'UTR 0.20 TCGA-73-4662-01 X 112024258 112024258 C A AMOT Nonsense_Mutation p.E777* 0.42 TCGA-73-4662-01 X 117033333 117033333 T C KLHL13 Silent p.Q505Q 0.13 TCGA-73-4662-01 X 119249586 119249586 C A RHOXF1 Missense_Mutation p.D63Y 0.41 tolerated(0.1) benign(0) TCGA-73-4662-01 X 12924813 12924813 G T TLR8 5'UTR 0.12 TCGA-73-4662-01 X 130420644 130420644 G T IGSF1 Missense_Mutation p.T2N 0.43 deleterious_low_confidence(0.02) benign(0.329) TCGA-73-4662-01 X 135574142 135574142 G T BRS3 Missense_Mutation p.A270S 0.06 deleterious(0) probably_damaging(0.999) TCGA-73-4662-01 X 135630900 135630900 G T VGLL1 Missense_Mutation p.A123S 0.19 tolerated(0.21) benign(0.006) TCGA-73-4662-01 X 135960160 135960160 C A RBMX Missense_Mutation p.R101I 0.10 deleterious(0.01) benign(0.03) TCGA-73-4662-01 X 147744260 147744260 C - AFF2 Frame_Shift_Del p.P338Qfs*11 0.24 TCGA-73-4662-01 X 148048333 148048333 C A AFF2 Missense_Mutation p.P976Q 0.20 tolerated(0.39) benign(0.011) TCGA-73-4662-01 X 151092363 151092363 T A MAGEA4 Missense_Mutation p.I76N 0.17 tolerated(0.12) benign(0.02) TCGA-73-4662-01 X 152034484 152034484 G T NSDHL Missense_Mutation p.G222V 0.10 deleterious(0) probably_damaging(1) TCGA-73-4662-01 X 153695419 153695419 G C PLXNA3 Missense_Mutation p.V1043L 0.13 deleterious(0) probably_damaging(0.997) TCGA-73-4662-01 X 154221303 154221303 G - F8 Frame_Shift_Del p.P170Hfs*15 0.23 TCGA-73-4662-01 X 53607798 53607798 T A HUWE1 Silent p.S1903S 0.19 TCGA-73-4662-01 X 69421829 69421829 G T DGAT2L6 Missense_Mutation p.A188S 0.11 tolerated(0.08) benign(0.025) TCGA-73-4662-01 X 70823472 70823472 C A ACRC Silent p.A115A 0.14 TCGA-73-4662-01 X 70832808 70832808 G C ACRC Silent p.G684G 0.15 TCGA-73-4662-01 X 71359765 71359765 C T NHSL2 Silent p.S789S 0.08 TCGA-73-4662-01 X 72434489 72434489 G T NAP1L2 5'UTR 0.19 TCGA-73-4662-01 X 73041658 73041658 C T XIST RNA 0.36 TCGA-73-4662-01 X 76845335 76845335 T A ATRX Silent p.T2062T 0.44 TCGA-73-4662-01 X 79932535 79932535 C G BRWD3 Missense_Mutation p.G1661A 0.04 tolerated_low_confidence(0.09) unknown(0) TCGA-73-4662-01 X 79939515 79939515 C A BRWD3 Missense_Mutation p.K1409N 0.32 deleterious(0.02) probably_damaging(0.948) TCGA-73-4662-01 X 82763325 82763325 C A POU3F4 5'UTR 0.39 TCGA-73-4662-01 X 88008550 88008550 A T CPXCR1 Missense_Mutation p.E45D 0.20 tolerated(0.21) benign(0.015) TCGA-73-4662-01 X 9693874 9693874 T C GPR143 Missense_Mutation p.D376G 0.12 deleterious_low_confidence(0.04) benign(0.072) TCGA-73-4666-01 10 101190365 101190365 G C GOT1 5'Flank 0.13 TCGA-73-4666-01 10 104240541 104240541 C A ACTR1A 3'UTR 0.28 TCGA-73-4666-01 10 115481472 115481472 C T CASP7 Silent p.L137L 0.27 TCGA-73-4666-01 10 31809437 31809437 C A ZEB1 Missense_Mutation p.Q393K 0.18 deleterious(0.01) probably_damaging(0.983) TCGA-73-4666-01 10 49371639 49371639 G T FRMPD2 Missense_Mutation p.Q1205K 0.20 tolerated(0.13) benign(0.293) TCGA-73-4666-01 10 55581628 55581628 G T PCDH15 Missense_Mutation p.T1955N 0.17 deleterious_low_confidence(0) unknown(0) TCGA-73-4666-01 10 71005913 71005913 C T HKDC1 Silent p.L318L 0.27 TCGA-73-4666-01 10 7214469 7214469 C A SFMBT2 Silent p.A713A 0.22 TCGA-73-4666-01 10 72434357 72434357 C A ADAMTS14 Missense_Mutation p.P43H 0.22 deleterious(0) probably_damaging(1) TCGA-73-4666-01 10 74631166 74631166 A G MCU Missense_Mutation p.K230R 0.22 tolerated(0.74) benign(0.015) TCGA-73-4666-01 10 75072314 75072314 T A TTC18 Nonsense_Mutation p.K404* 0.25 TCGA-73-4666-01 10 75434251 75434251 T C AGAP5 3'UTR 0.23 TCGA-73-4666-01 10 81926685 81926685 C T ANXA11 Silent p.R235R 0.30 TCGA-73-4666-01 10 85984092 85984092 C A LRIT2 Missense_Mutation p.D297Y 0.29 tolerated(0.13) benign(0.111) TCGA-73-4666-01 10 97920261 97920261 C T ZNF518A RNA 0.16 TCGA-73-4666-01 11 113102506 113102506 T A NCAM1 Missense_Mutation p.L459H 0.26 deleterious(0) probably_damaging(0.986) TCGA-73-4666-01 11 113614613 113614613 C A ZW10 Missense_Mutation p.L474F 0.32 tolerated(0.2) benign(0.098) TCGA-73-4666-01 11 120348166 120348166 G A ARHGEF12 Missense_Mutation p.D1155N 0.09 deleterious_low_confidence(0.02) benign(0.01) TCGA-73-4666-01 11 120732770 120732770 C T GRIK4 Nonsense_Mutation p.Q283* 0.22 TCGA-73-4666-01 11 121429318 121429318 C T SORL1 Silent p.D894D 0.09 TCGA-73-4666-01 11 122931962 122931962 C T HSPA8 Missense_Mutation p.G24E 0.09 deleterious_low_confidence(0.02) possibly_damaging(0.752) TCGA-73-4666-01 11 124738967 124738967 G T ROBO3 Missense_Mutation p.V144L 0.53 deleterious(0.02) probably_damaging(0.996) TCGA-73-4666-01 11 133789800 133789800 C A IGSF9B Missense_Mutation p.G1274C 0.27 deleterious_low_confidence(0) possibly_damaging(0.465) TCGA-73-4666-01 11 16071447 16071447 C G SOX6 Missense_Mutation p.R430P 0.13 deleterious(0) probably_damaging(0.983) TCGA-73-4666-01 11 26463539 26463539 G T ANO3 Missense_Mutation p.A41S 0.46 deleterious_low_confidence(0.01) benign(0.192) TCGA-73-4666-01 11 36484020 36484021 - T PRR5L Frame_Shift_Ins p.E282Gfs*38 0.55 TCGA-73-4666-01 11 40136961 40136961 C A LRRC4C Missense_Mutation p.E294D 0.14 tolerated(0.41) benign(0.02) TCGA-73-4666-01 11 4510855 4510855 C A OR52K1 Missense_Mutation p.T242K 0.55 deleterious(0) possibly_damaging(0.903) TCGA-73-4666-01 11 47808067 47808067 T C NUP160 Silent p.A1262A 0.53 TCGA-73-4666-01 11 49204738 49204738 G T FOLH1 Missense_Mutation p.H295N 0.33 deleterious(0.01) probably_damaging(0.979) TCGA-73-4666-01 11 4936463 4936463 G C OR51G2 Missense_Mutation p.T144R 0.46 tolerated(0.1) benign(0.005) TCGA-73-4666-01 11 5221019 5221019 C A OR51V1 Missense_Mutation p.K304N 0.48 deleterious(0) probably_damaging(0.963) TCGA-73-4666-01 11 55761491 55761491 C A OR5F1 Missense_Mutation p.G204V 0.19 deleterious(0.03) possibly_damaging(0.687) TCGA-73-4666-01 11 55761492 55761492 C G OR5F1 Missense_Mutation p.G204R 0.19 deleterious(0) probably_damaging(0.995) TCGA-73-4666-01 11 55761493 55761493 A G OR5F1 Silent p.A203A 0.19 TCGA-73-4666-01 11 55904450 55904450 T A OR8J3 Missense_Mutation p.T249S 0.33 tolerated(0.12) benign(0.086) TCGA-73-4666-01 11 55999812 55999812 G C OR5T2 Missense_Mutation p.L284V 0.21 deleterious(0) probably_damaging(0.984) TCGA-73-4666-01 11 56230498 56230498 G T OR5M9 Missense_Mutation p.P127H 0.20 deleterious(0) benign(0.194) TCGA-73-4666-01 11 58034376 58034376 C A OR10W1 3'UTR 0.27 TCGA-73-4666-01 11 58170869 58170869 G A OR5B3 Missense_Mutation p.T5I 0.21 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-73-4666-01 11 60264840 60264840 C T MS4A12 Missense_Mutation p.P17S 0.20 tolerated(0.15) benign(0.186) TCGA-73-4666-01 11 60711180 60711180 T C SLC15A3 Missense_Mutation p.Y326C 0.36 deleterious(0) probably_damaging(0.974) TCGA-73-4666-01 11 61511535 61511535 C G DAGLA Silent p.R901R 0.18 TCGA-73-4666-01 11 6261575 6261575 G T CNGA4 Missense_Mutation p.S184I 0.51 deleterious(0) possibly_damaging(0.859) TCGA-73-4666-01 11 63342429 63342429 T C PLA2G16 Silent p.R159R 0.38 TCGA-73-4666-01 11 65267721 65267721 G C MALAT1 RNA 0.19 TCGA-73-4666-01 11 65271640 65271640 G C MALAT1 RNA 0.21 TCGA-73-4666-01 11 67159667 67159667 G T RAD9A Missense_Mutation p.G24W 0.31 deleterious(0) probably_damaging(1) TCGA-73-4666-01 11 67941343 67941343 C G SUV420H1 Missense_Mutation p.G194A 0.08 deleterious(0) probably_damaging(0.988) TCGA-73-4666-01 11 68703856 68703856 A G IGHMBP2 Silent p.V636V 0.33 TCGA-73-4666-01 11 78412990 78412990 C T TENM4 Silent p.G1556G 0.32 TCGA-73-4666-01 11 88583213 88583213 C T GRM5 Missense_Mutation p.D258N 0.39 deleterious(0.01) probably_damaging(0.955) TCGA-73-4666-01 11 89883721 89883721 C T NAALAD2 Silent p.N185N 0.33 TCGA-73-4666-01 11 92507263 92507263 G T FAT3 Missense_Mutation p.A1418S 0.34 possibly_damaging(0.885) TCGA-73-4666-01 12 101477524 101477524 G T ANO4 Missense_Mutation p.K453N 0.62 tolerated(0.06) probably_damaging(0.939) TCGA-73-4666-01 12 104100609 104100609 C A STAB2 Missense_Mutation p.Q1346K 0.61 deleterious(0.05) benign(0.364) TCGA-73-4666-01 12 106831485 106831485 G A POLR3B Missense_Mutation p.S628N 0.09 deleterious(0) benign(0.016) TCGA-73-4666-01 12 109853423 109853423 A T MYO1H Missense_Mutation p.K516M 0.58 tolerated(0.11) benign(0.298) TCGA-73-4666-01 12 113824835 113824835 G C PLBD2 Missense_Mutation p.Q460H 0.50 tolerated(0.14) possibly_damaging(0.897) TCGA-73-4666-01 12 115111974 115111974 G A TBX3 Missense_Mutation p.S589F 0.33 deleterious(0.01) probably_damaging(0.954) TCGA-73-4666-01 12 123072257 123072257 G T KNTC1 Splice_Site p.X1244_splice 0.59 TCGA-73-4666-01 12 129822193 129822193 C A TMEM132D Missense_Mutation p.V429L 0.58 tolerated(0.09) benign(0.003) TCGA-73-4666-01 12 31814989 31814989 T G METTL20 Missense_Mutation p.C34W 0.58 tolerated_low_confidence(0.1) benign(0.237) TCGA-73-4666-01 12 32137950 32137950 G C KIAA1551 Missense_Mutation p.G1354A 0.65 deleterious(0.04) benign(0.014) TCGA-73-4666-01 12 52200170 52200170 G A SCN8A Missense_Mutation p.A1634T 0.12 deleterious(0.04) probably_damaging(0.995) TCGA-73-4666-01 12 52760934 52760934 C A KRT85 Missense_Mutation p.G86C 0.53 deleterious(0) probably_damaging(1) TCGA-73-4666-01 12 53040627 53040627 A G KRT2 Silent p.L456L 0.13 TCGA-73-4666-01 12 53073922 53073922 C T KRT1 Missense_Mutation p.G71S 0.59 deleterious(0.01) unknown(0) TCGA-73-4666-01 12 71054797 71054797 G T PTPRR Silent p.P563P 0.65 TCGA-73-4666-01 12 78513629 78513629 C A NAV3 Missense_Mutation p.P1218H 0.52 deleterious(0.03) probably_damaging(1) TCGA-73-4666-01 12 80752535 80752535 G T OTOGL Missense_Mutation p.C2060F 0.61 deleterious(0) probably_damaging(0.987) TCGA-73-4666-01 13 21620119 21620119 C A LATS2 Missense_Mutation p.R16L 0.30 deleterious(0) probably_damaging(0.997) TCGA-73-4666-01 13 23907731 23907731 T A SACS Silent p.T3428T 0.07 TCGA-73-4666-01 13 25670983 25670983 C A PABPC3 Missense_Mutation p.P216H 0.28 deleterious(0.04) benign(0.024) TCGA-73-4666-01 13 29599385 29599385 G T MTUS2 Missense_Mutation p.V194L 0.28 deleterious(0.02) benign(0.053) TCGA-73-4666-01 13 31480616 31480616 G T MEDAG 5'UTR 0.38 TCGA-73-4666-01 13 33741717 33741717 C G STARD13 Missense_Mutation p.G71A 0.26 deleterious(0) probably_damaging(1) TCGA-73-4666-01 13 37679171 37679171 G - CSNK1A1L Frame_Shift_Del p.H75Tfs*14 0.17 TCGA-73-4666-01 13 43474465 43474465 G T EPSTI1 Missense_Mutation p.H277N 0.22 tolerated(0.08) benign(0.394) TCGA-73-4666-01 13 58299073 58299073 C A PCDH17 Missense_Mutation p.A1042E 0.33 deleterious_low_confidence(0.05) benign(0.07) TCGA-73-4666-01 13 76112016 76112016 C G COMMD6 5'Flank 0.45 TCGA-73-4666-01 13 84455381 84455381 G T SLITRK1 Missense_Mutation p.H88N 0.33 tolerated(0.08) benign(0.109) TCGA-73-4666-01 13 93879811 93879811 C T GPC6 Silent p.R34R 0.42 TCGA-73-4666-01 13 98641334 98641334 A T IPO5 Missense_Mutation p.Q146L 0.09 tolerated(0.16) benign(0.02) TCGA-73-4666-01 13 99481647 99481647 T A DOCK9 Nonsense_Mutation p.K1604* 0.42 TCGA-73-4666-01 14 105420473 105420473 T A AHNAK2 Missense_Mutation p.R439W 0.36 probably_damaging(0.983) TCGA-73-4666-01 14 19553590 19553590 G C POTEG Missense_Mutation p.R58S 0.06 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-73-4666-01 14 20586105 20586105 G A OR4K17 Nonsense_Mutation p.W180* 0.15 TCGA-73-4666-01 14 20586106 20586106 C A OR4K17 Missense_Mutation p.L181I 0.15 tolerated(1) benign(0.007) TCGA-73-4666-01 14 22102444 22102444 G A OR10G2 Silent p.D185D 0.18 TCGA-73-4666-01 14 22251572 22251572 G T TRAV7 Missense_Mutation p.M63I 0.52 deleterious(0) benign(0.006) TCGA-73-4666-01 14 33046386 33046386 G T AKAP6 Nonsense_Mutation p.E803* 0.13 TCGA-73-4666-01 14 33293096 33293096 G T AKAP6 Missense_Mutation p.G2026V 0.30 deleterious(0.01) benign(0.001) TCGA-73-4666-01 14 39870542 39870542 C G FBXO33 Missense_Mutation p.D412H 0.13 deleterious(0) probably_damaging(0.996) TCGA-73-4666-01 14 52923870 52923870 T A TXNDC16 Silent p.A547A 0.26 TCGA-73-4666-01 14 65266574 65266574 C A SPTB Nonsense_Mutation p.E319* 0.27 TCGA-73-4666-01 14 68219064 68219064 G A ZFYVE26 Silent p.P2456P 0.23 TCGA-73-4666-01 14 72924983 72924983 A C RGS6 Missense_Mutation p.E80D 0.11 tolerated(0.07) probably_damaging(0.951) TCGA-73-4666-01 14 73421133 73421133 G T DCAF4 Missense_Mutation p.G316V 0.11 deleterious(0) probably_damaging(0.998) TCGA-73-4666-01 14 92054420 92054420 G A CATSPERB Missense_Mutation p.H987Y 0.38 tolerated(0.13) benign(0.003) TCGA-73-4666-01 14 94203694 94203694 G T PRIMA1 Silent p.P84P 0.23 TCGA-73-4666-01 14 95053860 95053860 G T SERPINA5 Missense_Mutation p.R54M 0.25 deleterious(0.03) probably_damaging(0.998) TCGA-73-4666-01 14 95053861 95053861 G T SERPINA5 Missense_Mutation p.R54S 0.25 deleterious(0) probably_damaging(0.997) TCGA-73-4666-01 14 95088697 95088697 C G SERPINA3 Missense_Mutation p.L313V 0.20 tolerated(0.07) possibly_damaging(0.583) TCGA-73-4666-01 15 25326347 25326347 A T SNORD116-12 3'Flank 0.53 TCGA-73-4666-01 15 25458686 25458686 G T SNORD115-22 3'Flank 0.41 TCGA-73-4666-01 15 25458687 25458687 C T SNORD115-22 3'Flank 0.41 TCGA-73-4666-01 15 26806188 26806188 T G GABRB3 Missense_Mutation p.Y324S 0.18 deleterious(0) possibly_damaging(0.85) TCGA-73-4666-01 15 33895526 33895526 C A RYR3 Missense_Mutation p.L709M 0.44 probably_damaging(1) TCGA-73-4666-01 15 33926924 33926924 C A RYR3 Missense_Mutation p.D1055E 0.36 probably_damaging(0.951) TCGA-73-4666-01 15 35176875 35176875 C A AQR Missense_Mutation p.D960Y 0.46 deleterious(0.01) benign(0.252) TCGA-73-4666-01 15 44066902 44066902 T C ELL3 Missense_Mutation p.S239G 0.22 deleterious(0.03) benign(0.024) TCGA-73-4666-01 15 44876526 44876526 G A SPG11 Silent p.A1784A 0.38 TCGA-73-4666-01 15 48057281 48057281 C A SEMA6D Intron 0.40 TCGA-73-4666-01 15 48524927 48524927 C A SLC12A1 Missense_Mutation p.Q327K 0.45 deleterious(0.01) probably_damaging(0.993) TCGA-73-4666-01 15 57809044 57809044 G A CGNL1 Missense_Mutation p.V824M 0.17 tolerated(0.11) benign(0.026) TCGA-73-4666-01 15 75648297 75648297 G A MAN2C1 Missense_Mutation p.P1042S 0.30 deleterious(0.03) unknown(0) TCGA-73-4666-01 15 83226624 83226624 T A CPEB1 Silent p.S164S 0.53 TCGA-73-4666-01 16 11000871 11000871 G C CIITA Missense_Mutation p.D508H 0.14 deleterious(0) probably_damaging(0.988) TCGA-73-4666-01 16 14345836 14345836 G T MKL2 Missense_Mutation p.A791S 0.40 tolerated(0.66) benign(0.138) TCGA-73-4666-01 16 1604883 1604883 C A TMEM204 Silent p.A179A 0.26 TCGA-73-4666-01 16 20551983 20551983 G C ACSM2B Missense_Mutation p.P541R 0.13 deleterious(0) probably_damaging(0.998) TCGA-73-4666-01 16 21262123 21262123 G T ANKS4B Silent p.L412L 0.24 TCGA-73-4666-01 16 23223352 23223352 C A SCNN1G Intron 0.28 TCGA-73-4666-01 16 24268274 24268274 T A CACNG3 Missense_Mutation p.C67S 0.27 deleterious(0) benign(0.158) TCGA-73-4666-01 16 27231974 27231974 C A KDM8 Missense_Mutation p.L430M 0.31 deleterious(0) probably_damaging(0.999) TCGA-73-4666-01 16 4731568 4731568 A C MGRN1 Silent p.P383P 0.41 TCGA-73-4666-01 16 48231969 48231969 G T ABCC11 Missense_Mutation p.Q743K 0.38 tolerated(0.59) benign(0.005) TCGA-73-4666-01 16 50744658 50744658 A T NOD2 Missense_Mutation p.E279V 0.37 tolerated(0.06) benign(0.382) TCGA-73-4666-01 16 55523689 55523689 C A MMP2 Missense_Mutation p.T378K 0.28 deleterious(0) possibly_damaging(0.521) TCGA-73-4666-01 16 55893498 55893498 G A CES5A Silent p.I368I 0.19 TCGA-73-4666-01 16 58752583 58752583 A C GOT2 Missense_Mutation p.F149V 0.18 deleterious(0.03) benign(0.055) TCGA-73-4666-01 16 66850922 66850922 G A NAE1 Nonsense_Mutation p.R232* 0.09 TCGA-73-4666-01 16 70719722 70719722 G A MTSS1L 5'UTR 0.31 TCGA-73-4666-01 16 70719723 70719723 G A MTSS1L 5'UTR 0.31 TCGA-73-4666-01 16 75147476 75147476 T C LDHD Missense_Mutation p.H371R 0.32 deleterious(0) probably_damaging(0.983) TCGA-73-4666-01 17 10431163 10431163 A G MYH2 Missense_Mutation p.L1258P 0.27 deleterious(0) probably_damaging(0.932) TCGA-73-4666-01 17 11865411 11865411 T A DNAH9 Silent p.T4357T 0.26 TCGA-73-4666-01 17 15539485 15539485 C A TRIM16 Missense_Mutation p.E238D 0.09 deleterious(0.04) possibly_damaging(0.682) TCGA-73-4666-01 17 21731087 21731087 G A UBBP4 Missense_Mutation p.R130H 0.41 tolerated(0.09) possibly_damaging(0.766) TCGA-73-4666-01 17 26093575 26093575 C A NOS2 Missense_Mutation p.R736M 0.24 deleterious(0.01) probably_damaging(0.928) TCGA-73-4666-01 17 3324236 3324236 C A OR3A3 Silent p.T125T 0.42 TCGA-73-4666-01 17 33434066 33434066 G T RAD51D Missense_Mutation p.L161M 0.16 tolerated(0.09) possibly_damaging(0.612) TCGA-73-4666-01 17 43194110 43194110 G A PLCD3 Silent p.C434C 0.15 TCGA-73-4666-01 17 45924888 45924888 C T SP6 Missense_Mutation p.R303H 0.32 deleterious(0) probably_damaging(0.984) TCGA-73-4666-01 17 46608074 46608074 C A HOXB1 Missense_Mutation p.A65S 0.16 tolerated(0.57) benign(0.003) TCGA-73-4666-01 17 56642232 56642232 C G TEX14 Missense_Mutation p.E1400D 0.08 tolerated(0.09) benign(0.032) TCGA-73-4666-01 17 61432309 61432309 G - TANC2 Frame_Shift_Del p.G640Afs*18 0.12 TCGA-73-4666-01 17 70845835 70845835 C A SLC39A11 Missense_Mutation p.G187V 0.29 tolerated(0.1) benign(0.039) TCGA-73-4666-01 17 7577538 7577538 C G TP53 Missense_Mutation p.R248P 0.52 deleterious(0) probably_damaging(1) TCGA-73-4666-01 17 7705029 7705029 G A DNAH2 Splice_Site p.X2944_splice 0.13 TCGA-73-4666-01 17 7749462 7749462 C - KDM6B Frame_Shift_Del p.R102Gfs*96 0.33 TCGA-73-4666-01 17 77921563 77921563 C A TBC1D16 Missense_Mutation p.V537L 0.31 tolerated(1) benign(0.162) TCGA-73-4666-01 17 78444626 78444626 C A NPTX1 Missense_Mutation p.R429L 0.47 deleterious(0.01) possibly_damaging(0.483) TCGA-73-4666-01 17 9281903 9281903 C A STX8 Silent p.R203R 0.24 TCGA-73-4666-01 18 13885062 13885062 C T MC2R Silent p.T152T 0.16 TCGA-73-4666-01 18 19996925 19996925 T A CTAGE1 Nonsense_Mutation p.K284* 0.16 TCGA-73-4666-01 18 28736036 28736036 C A DSC1 Silent p.S147S 0.27 TCGA-73-4666-01 18 30926363 30926363 G A CCDC178 Missense_Mutation p.P157L 0.18 deleterious(0.03) benign(0.11) TCGA-73-4666-01 18 31324771 31324771 A C ASXL3 Silent p.S1653S 0.15 TCGA-73-4666-01 18 40854041 40854041 A T SYT4 Missense_Mutation p.L118Q 0.16 tolerated(0.09) possibly_damaging(0.542) TCGA-73-4666-01 18 56363658 56363658 T C MALT1 Missense_Mutation p.L146P 0.13 deleterious(0) probably_damaging(1) TCGA-73-4666-01 18 61653531 61653531 G T SERPINB8 Intron 0.18 TCGA-73-4666-01 18 67534622 67534622 G C CD226 Missense_Mutation p.L286V 0.13 tolerated(0.14) benign(0.034) TCGA-73-4666-01 18 74091436 74091436 C A ZNF516 Missense_Mutation p.W878C 0.21 tolerated(0.19) probably_damaging(0.998) TCGA-73-4666-01 18 8783766 8783766 A G SOGA2 Missense_Mutation p.N219S 0.32 tolerated(0.09) benign(0.233) TCGA-73-4666-01 19 10597396 10597396 C A KEAP1 Missense_Mutation p.G603W 0.36 deleterious(0) probably_damaging(1) TCGA-73-4666-01 19 15734084 15734084 G T CYP4F8 RNA 0.46 TCGA-73-4666-01 19 24010488 24010488 G T RPSAP58 Missense_Mutation p.W175C 0.44 deleterious(0.04) possibly_damaging(0.508) TCGA-73-4666-01 19 36050944 36050944 G T ATP4A Silent p.G273G 0.46 TCGA-73-4666-01 19 36218608 36218608 G A KMT2B Missense_Mutation p.D1438N 0.42 benign(0.227) TCGA-73-4666-01 19 51379851 51379851 C A KLK2 Missense_Mutation p.S110R 0.43 tolerated(0.22) benign(0.222) TCGA-73-4666-01 19 53057530 53057530 C T ZNF808 Missense_Mutation p.P454L 0.48 tolerated(0.07) probably_damaging(1) TCGA-73-4666-01 19 53957975 53957975 G T ZNF761 RNA 0.39 TCGA-73-4666-01 19 54466459 54466459 G T CACNG8 Silent p.V21V 0.39 TCGA-73-4666-01 19 55143080 55143080 C A LILRB1 Missense_Mutation p.A67E 0.44 tolerated(0.79) benign(0.009) TCGA-73-4666-01 19 55349047 55349047 T G KIR2DS4 Silent p.P29P 0.34 TCGA-73-4666-01 19 55351062 55351062 C A KIR2DS4 Missense_Mutation p.P184T 0.47 deleterious_low_confidence(0) benign(0.008) TCGA-73-4666-01 19 55493644 55493644 T C NLRP2 Missense_Mutation p.I193T 0.42 deleterious(0.02) possibly_damaging(0.722) TCGA-73-4666-01 19 56114114 56114114 G T ZNF524 Silent p.T212T 0.33 TCGA-73-4666-01 19 56373482 56373482 T A NLRP4 Missense_Mutation p.C715S 0.53 tolerated(0.06) possibly_damaging(0.566) TCGA-73-4666-01 19 57640890 57640890 C A USP29 Missense_Mutation p.L283M 0.45 deleterious(0.03) possibly_damaging(0.601) TCGA-73-4666-01 19 57803657 57803657 G T ZNF460 3'UTR 0.46 TCGA-73-4666-01 19 58549360 58549360 G T ZSCAN1 Silent p.P52P 0.45 TCGA-73-4666-01 1 100154432 100154432 G A PALMD Missense_Mutation p.G206R 0.23 deleterious(0) probably_damaging(1) TCGA-73-4666-01 1 100598771 100598771 A T TRMT13 Missense_Mutation p.E16V 0.24 deleterious(0.04) benign(0.175) TCGA-73-4666-01 1 102269934 102269934 G T OLFM3 Missense_Mutation p.P413T 0.16 deleterious(0) probably_damaging(0.999) TCGA-73-4666-01 1 103544276 103544276 G T COL11A1 Missense_Mutation p.H142Q 0.21 possibly_damaging(0.627) TCGA-73-4666-01 1 109810586 109810586 C T CELSR2 Silent p.V2074V 0.14 TCGA-73-4666-01 1 111060137 111060137 C T KCNA10 Missense_Mutation p.G425R 0.22 deleterious(0) probably_damaging(1) TCGA-73-4666-01 1 12009871 12009871 G T PLOD1 Silent p.T70T 0.24 TCGA-73-4666-01 1 1289872 1289872 C T MXRA8 Missense_Mutation p.G323S 0.12 tolerated(0.34) probably_damaging(0.958) TCGA-73-4666-01 1 149858837 149858837 C G HIST2H2AC Missense_Mutation p.Q105E 0.17 tolerated_low_confidence(0.07) benign(0.039) TCGA-73-4666-01 1 150935079 150935079 C G SETDB1 Missense_Mutation p.R1059G 0.41 deleterious_low_confidence(0.03) benign(0.092) TCGA-73-4666-01 1 151139642 151139642 A G SCNM1 Missense_Mutation p.K86R 0.23 tolerated(0.52) benign(0.029) TCGA-73-4666-01 1 154319197 154319197 G T ATP8B2 Silent p.G1075G 0.17 TCGA-73-4666-01 1 154918707 154918707 C T PBXIP1 Silent p.G481G 0.14 TCGA-73-4666-01 1 154988888 154988888 C G ZBTB7B Silent p.L483L 0.07 TCGA-73-4666-01 1 155874530 155874530 C A RIT1 Missense_Mutation p.A94S 0.48 deleterious(0) probably_damaging(0.977) TCGA-73-4666-01 1 156910211 156910211 C A ARHGEF11 Missense_Mutation p.G1174V 0.19 deleterious_low_confidence(0) possibly_damaging(0.867) TCGA-73-4666-01 1 156910213 156910213 A C ARHGEF11 Silent p.T1173T 0.17 TCGA-73-4666-01 1 158368639 158368639 C A OR10T2 Silent p.L206L 0.38 TCGA-73-4666-01 1 159175317 159175317 T A DARC Missense_Mutation p.Y32N 0.15 tolerated(0.09) possibly_damaging(0.858) TCGA-73-4666-01 1 159410315 159410315 C T OR10J1 Missense_Mutation p.T256I 0.40 tolerated(0.25) benign(0.424) TCGA-73-4666-01 1 174210776 174210776 C G RABGAP1L Missense_Mutation p.S233C 0.06 deleterious(0.04) benign(0.111) TCGA-73-4666-01 1 175957481 175957481 G A RFWD2 Missense_Mutation p.H639Y 0.54 deleterious(0) probably_damaging(1) TCGA-73-4666-01 1 176709310 176709310 G T PAPPA2 Missense_Mutation p.G1377W 0.11 tolerated(0.11) possibly_damaging(0.907) TCGA-73-4666-01 1 176857281 176857281 C A ASTN1 Missense_Mutation p.E1000D 0.42 tolerated(0.87) benign(0.01) TCGA-73-4666-01 1 181706767 181706767 C A CACNA1E Missense_Mutation p.L1177M 0.42 tolerated(0.09) probably_damaging(0.91) TCGA-73-4666-01 1 181706768 181706768 T A CACNA1E Missense_Mutation p.L1177Q 0.42 tolerated(1) probably_damaging(0.944) TCGA-73-4666-01 1 181765861 181765861 G A CACNA1E Missense_Mutation p.R2089Q 0.57 deleterious(0.02) possibly_damaging(0.614) TCGA-73-4666-01 1 183876181 183876181 A T RGL1 Missense_Mutation p.D538V 0.36 deleterious(0) benign(0.051) TCGA-73-4666-01 1 184663205 184663205 C A EDEM3 Nonsense_Mutation p.E931* 0.09 TCGA-73-4666-01 1 190067649 190067649 C A BRINP3 Missense_Mutation p.K600N 0.16 tolerated(0.71) benign(0.001) TCGA-73-4666-01 1 201293685 201293685 C G PKP1 Missense_Mutation p.H625D 0.36 tolerated(0.12) probably_damaging(0.997) TCGA-73-4666-01 1 201868511 201868511 G T LMOD1 Missense_Mutation p.P544T 0.18 probably_damaging(0.987) TCGA-73-4666-01 1 204214839 204214839 G T PLEKHA6 Silent p.R646R 0.39 TCGA-73-4666-01 1 206666678 206666678 A C IKBKE Missense_Mutation p.Y671S 0.15 tolerated(0.19) benign(0.003) TCGA-73-4666-01 1 234599596 234599596 T C TARBP1 Silent p.P462P 0.31 TCGA-73-4666-01 1 23751185 23751185 G A TCEA3 5'UTR 0.32 TCGA-73-4666-01 1 237813270 237813270 G T RYR2 Missense_Mutation p.A2536S 0.13 benign(0.406) TCGA-73-4666-01 1 246829232 246829232 G T CNST 3'UTR 0.30 TCGA-73-4666-01 1 247752058 247752058 C A OR2G2 Missense_Mutation p.L133I 0.41 deleterious(0) probably_damaging(0.998) TCGA-73-4666-01 1 248059635 248059635 C A OR2W3 Silent p.S249S 0.13 TCGA-73-4666-01 1 31478858 31478858 T C PUM1 Missense_Mutation p.I188V 0.48 deleterious_low_confidence(0) probably_damaging(0.946) TCGA-73-4666-01 1 32796425 32796425 G T HDAC1 Nonsense_Mutation p.G299* 0.26 TCGA-73-4666-01 1 34684357 34684357 T G C1orf94 Missense_Mutation p.F598V 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-73-4666-01 1 55175767 55175767 G T MROH7 Missense_Mutation p.W1293C 0.12 deleterious_low_confidence(0.03) benign(0.258) TCGA-73-4666-01 1 5964716 5964716 T C NPHP4 Missense_Mutation p.I702V 0.19 tolerated(0.92) benign(0.003) TCGA-73-4666-01 1 67558821 67558821 G C C1orf141 Missense_Mutation p.T357R 0.19 tolerated(0.66) benign(0.043) TCGA-73-4666-01 1 72400950 72400950 C A NEGR1 Missense_Mutation p.R74L 0.32 deleterious(0) probably_damaging(0.999) TCGA-73-4666-01 1 76251902 76251902 C G RABGGTB 5'UTR 0.20 TCGA-73-4666-01 1 7792506 7792506 A G CAMTA1 Splice_Site p.X972_splice 0.25 TCGA-73-4666-01 1 78959226 78959226 G T PTGFR Silent p.L266L 0.09 TCGA-73-4666-01 1 78959227 78959227 G T PTGFR Splice_Site p.X266_splice 0.09 TCGA-73-4666-01 1 91382454 91382454 C A ZNF644 Silent p.R1295R 0.18 TCGA-73-4666-01 1 99418635 99418635 C T LPPR5 Missense_Mutation p.M204I 0.17 tolerated(0.11) benign(0.012) TCGA-73-4666-01 20 29992697 29992697 C A DEFB121 3'UTR 0.35 TCGA-73-4666-01 20 31062425 31062425 T A C20orf112 Missense_Mutation p.N30Y 0.16 deleterious(0) possibly_damaging(0.459) TCGA-73-4666-01 20 33328755 33328755 C A NCOA6 Missense_Mutation p.D1769Y 0.31 probably_damaging(0.979) TCGA-73-4666-01 20 33875579 33875579 C A FAM83C Missense_Mutation p.V335F 0.32 deleterious(0.05) benign(0.1) TCGA-73-4666-01 20 34240590 34240590 T A RBM12 Silent p.S885S 0.35 TCGA-73-4666-01 20 35749391 35749391 C T MROH8 Silent p.L702L 0.30 TCGA-73-4666-01 20 43384969 43384969 G A RIMS4 Missense_Mutation p.R207W 0.15 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-73-4666-01 20 44683562 44683562 G A SLC12A5 Missense_Mutation p.S919N 0.34 tolerated(0.37) benign(0.003) TCGA-73-4666-01 20 47991437 47991437 G T KCNB1 Missense_Mutation p.F220L 0.35 tolerated(0.18) probably_damaging(0.942) TCGA-73-4666-01 20 58348440 58348440 G T PHACTR3 Silent p.R286R 0.25 TCGA-73-4666-01 20 58644975 58644975 C G C20orf197 5'UTR 0.21 TCGA-73-4666-01 21 10996050 10996050 C G TPTE RNA 0.17 TCGA-73-4666-01 21 27840859 27840859 A G CYYR1 Silent p.R142R 0.11 TCGA-73-4666-01 21 28307030 28307030 C A ADAMTS5 Missense_Mutation p.G482C 0.25 deleterious(0.01) possibly_damaging(0.781) TCGA-73-4666-01 21 30714991 30714991 G T BACH1 Missense_Mutation p.C683F 0.21 deleterious(0.04) benign(0.054) TCGA-73-4666-01 21 31720852 31720852 A T KRTAP23-1 Missense_Mutation p.S25T 0.37 deleterious_low_confidence(0) unknown(0) TCGA-73-4666-01 21 31863900 31863900 G C KRTAP19-3 3'UTR 0.30 TCGA-73-4666-01 21 33371024 33371024 A G HUNK Missense_Mutation p.M558V 0.16 tolerated_low_confidence(0.85) benign(0.001) TCGA-73-4666-01 21 41142900 41142900 G C IGSF5 Missense_Mutation p.C159S 0.41 deleterious(0.01) benign(0.27) TCGA-73-4666-01 21 41143096 41143096 C A IGSF5 Silent p.A224A 0.20 TCGA-73-4666-01 22 30866229 30866229 G T SEC14L3 Missense_Mutation p.D48E 0.24 deleterious(0) benign(0.071) TCGA-73-4666-01 22 42032775 42032775 G T XRCC6 Splice_Site p.X197_splice 0.20 TCGA-73-4666-01 2 103274403 103274403 G T SLC9A2 Missense_Mutation p.A224S 0.29 tolerated(0.31) probably_damaging(0.999) TCGA-73-4666-01 2 107021544 107021544 G T RGPD3 3'UTR 0.31 TCGA-73-4666-01 2 111542323 111542323 G T ACOXL Missense_Mutation p.K30N 0.17 tolerated(0.09) benign(0.002) TCGA-73-4666-01 2 119752160 119752160 G A MARCO 3'UTR 0.16 TCGA-73-4666-01 2 130832264 130832264 C T POTEF Missense_Mutation p.M927I 0.11 deleterious_low_confidence(0.03) benign(0.172) TCGA-73-4666-01 2 135075164 135075164 G - MGAT5 Frame_Shift_Del p.G158Efs*6 0.27 TCGA-73-4666-01 2 141004719 141004719 G A LRP1B Silent p.N4420N 0.38 TCGA-73-4666-01 2 141128282 141128282 T - LRP1B Frame_Shift_Del p.R3669Efs*87 0.31 TCGA-73-4666-01 2 141208161 141208161 C G LRP1B Missense_Mutation p.G3345R 0.19 probably_damaging(0.988) TCGA-73-4666-01 2 15555760 15555760 C A NBAS Silent p.V949V 0.33 TCGA-73-4666-01 2 163279808 163279808 C - KCNH7 Intron 0.33 TCGA-73-4666-01 2 166243334 166243334 A T SCN2A Missense_Mutation p.N1544Y 0.33 deleterious(0) probably_damaging(1) TCGA-73-4666-01 2 173429789 173429789 G T PDK1 Nonsense_Mutation p.E227* 0.18 TCGA-73-4666-01 2 189923246 189923246 C A COL5A2 Missense_Mutation p.R713L 0.20 unknown(0) TCGA-73-4666-01 2 1926808 1926808 G T MYT1L Silent p.R245R 0.34 TCGA-73-4666-01 2 206480498 206480498 G T PARD3B Missense_Mutation p.Q1131H 0.34 deleterious(0.01) probably_damaging(0.954) TCGA-73-4666-01 2 206480499 206480499 G T PARD3B Missense_Mutation p.D1132Y 0.33 deleterious(0) probably_damaging(1) TCGA-73-4666-01 2 211525369 211525369 T C CPS1 Missense_Mutation p.V1312A 0.24 deleterious(0) possibly_damaging(0.727) TCGA-73-4666-01 2 215833452 215833452 G T ABCA12 Missense_Mutation p.L1924I 0.12 tolerated(0.11) possibly_damaging(0.534) TCGA-73-4666-01 2 220136344 220136344 C A TUBA4B RNA 0.11 TCGA-73-4666-01 2 223574470 223574470 C G MOGAT1 Missense_Mutation p.P290R 0.16 tolerated(0.18) probably_damaging(0.983) TCGA-73-4666-01 2 230655921 230655921 C T TRIP12 Missense_Mutation p.G1413S 0.18 tolerated(0.46) benign(0.012) TCGA-73-4666-01 2 239039107 239039107 C A ESPNL Silent p.P584P 0.40 TCGA-73-4666-01 2 242276804 242276804 A G SEPT2 Missense_Mutation p.T117A 0.12 tolerated(0.1) benign(0.001) TCGA-73-4666-01 2 30977208 30977208 A T CAPN13 Missense_Mutation p.C297S 0.14 tolerated(0.52) benign(0.001) TCGA-73-4666-01 2 32289037 32289037 A C SPAST Missense_Mutation p.H46P 0.19 deleterious(0.03) probably_damaging(0.994) TCGA-73-4666-01 2 33740140 33740140 A G RASGRP3 5'UTR 0.06 TCGA-73-4666-01 2 40655792 40655792 C A SLC8A1 Missense_Mutation p.E543D 0.18 tolerated(0.11) benign(0.112) TCGA-73-4666-01 2 46211804 46211804 G C PRKCE Missense_Mutation p.G270R 0.16 deleterious(0) probably_damaging(0.998) TCGA-73-4666-01 2 49216144 49216144 C A FSHR Missense_Mutation p.V166L 0.17 tolerated(0.75) benign(0) TCGA-73-4666-01 2 56420277 56420277 G T CCDC85A Silent p.P314P 0.25 TCGA-73-4666-01 2 80831226 80831226 T A CTNNA2 Silent p.S739S 0.24 TCGA-73-4666-01 2 8919174 8919174 C G KIDINS220 Silent p.V822V 0.14 TCGA-73-4666-01 2 96953686 96953686 C T SNRNP200 Missense_Mutation p.A1094T 0.11 deleterious(0) probably_damaging(0.996) TCGA-73-4666-01 3 101576251 101576251 T G NFKBIZ Missense_Mutation p.L684W 0.29 deleterious(0) probably_damaging(0.987) TCGA-73-4666-01 3 113723453 113723453 A G KIAA1407 Intron 0.29 TCGA-73-4666-01 3 114026903 114026903 C T TIGIT Silent p.A220A 0.14 TCGA-73-4666-01 3 119217733 119217733 G A TIMMDC1 Silent p.P51P 0.30 TCGA-73-4666-01 3 120469602 120469602 G T GTF2E1 Missense_Mutation p.G68V 0.29 tolerated(0.12) benign(0.438) TCGA-73-4666-01 3 121634151 121634151 A G SLC15A2 Silent p.T202T 0.15 TCGA-73-4666-01 3 121712106 121712106 C - ILDR1 Frame_Shift_Del p.R497Pfs*83 0.54 TCGA-73-4666-01 3 122003461 122003461 C G CASR Missense_Mutation p.A897G 0.24 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-73-4666-01 3 123458844 123458844 A T MYLK Missense_Mutation p.S126R 0.29 tolerated(0.27) benign(0.095) TCGA-73-4666-01 3 129821757 129821757 C A FAM86HP Splice_Site 0.31 TCGA-73-4666-01 3 130463531 130463549 CTTCTGGAAGATAAGTGGG - PIK3R4 Frame_Shift_Del p.P172Tfs*35 0.30 TCGA-73-4666-01 3 134911494 134911494 G T EPHB1 Silent p.L653L 0.35 TCGA-73-4666-01 3 138724774 138724774 C A PRR23A Nonsense_Mutation p.G113* 0.20 TCGA-73-4666-01 3 140406710 140406710 G A TRIM42 Missense_Mutation p.E396K 0.11 deleterious(0) probably_damaging(0.998) TCGA-73-4666-01 3 15282026 15282026 G T CAPN7 Missense_Mutation p.W485L 0.41 deleterious(0) probably_damaging(0.999) TCGA-73-4666-01 3 154889939 154889939 G C MME Missense_Mutation p.E672Q 0.09 deleterious(0.01) possibly_damaging(0.8) TCGA-73-4666-01 3 167246840 167246840 C A WDR49 Missense_Mutation p.E450D 0.31 deleterious(0.02) benign(0.424) TCGA-73-4666-01 3 176771667 176771667 T C TBL1XR1 Missense_Mutation p.H33R 0.26 tolerated(0.38) benign(0.082) TCGA-73-4666-01 3 183896907 183896907 G T AP2M1 Missense_Mutation p.D113Y 0.29 deleterious(0.01) probably_damaging(1) TCGA-73-4666-01 3 43121132 43121132 C T POMGNT2 3'UTR 0.24 TCGA-73-4666-01 3 45030648 45030648 A G EXOSC7 Missense_Mutation p.D25G 0.40 deleterious(0.01) probably_damaging(1) TCGA-73-4666-01 3 47158149 47158149 C A SETD2 Missense_Mutation p.G1517V 0.41 deleterious(0) probably_damaging(0.999) TCGA-73-4666-01 3 51264852 51264852 C A DOCK3 Missense_Mutation p.R506S 0.47 deleterious(0) probably_damaging(0.999) TCGA-73-4666-01 3 55922479 55922479 T G ERC2 Missense_Mutation p.E834D 0.46 tolerated(0.81) benign(0.075) TCGA-73-4666-01 3 7721839 7721839 C A GRM7 Missense_Mutation p.P852H 0.41 deleterious(0) probably_damaging(0.998) TCGA-73-4666-01 4 100232725 100232725 G T ADH1B Missense_Mutation p.P306H 0.17 deleterious(0) probably_damaging(0.986) TCGA-73-4666-01 4 100443752 100443752 A T C4orf17 Missense_Mutation p.R75W 0.16 deleterious(0) possibly_damaging(0.882) TCGA-73-4666-01 4 100829884 100829884 C A DNAJB14 Silent p.G207G 0.26 TCGA-73-4666-01 4 114279144 114279144 T A ANK2 Missense_Mutation p.Y3124N 0.32 probably_damaging(0.972) TCGA-73-4666-01 4 114290956 114290956 G A ANK2 Missense_Mutation p.E3869K 0.32 benign(0.096) TCGA-73-4666-01 4 13605199 13605199 C G BOD1L1 Missense_Mutation p.G1109R 0.13 possibly_damaging(0.653) TCGA-73-4666-01 4 146823533 146823533 T A ZNF827 Missense_Mutation p.E293V 0.37 deleterious(0) probably_damaging(0.996) TCGA-73-4666-01 4 155156682 155156682 C A DCHS2 Missense_Mutation p.R2586I 0.21 deleterious(0.01) benign(0.193) TCGA-73-4666-01 4 162697067 162697067 T A FSTL5 Missense_Mutation p.D190V 0.06 deleterious(0) benign(0.399) TCGA-73-4666-01 4 164271576 164271576 G T NPY5R Missense_Mutation p.V51L 0.34 deleterious(0.01) benign(0.176) TCGA-73-4666-01 4 164271917 164271917 G T NPY5R Missense_Mutation p.W164C 0.18 deleterious(0) probably_damaging(1) TCGA-73-4666-01 4 167663162 167663163 - C SPOCK3 Frame_Shift_Ins p.V330Gfs*13 0.23 TCGA-73-4666-01 4 189012595 189012595 C A TRIML2 Missense_Mutation p.D366Y 0.42 deleterious(0) possibly_damaging(0.878) TCGA-73-4666-01 4 189065202 189065202 C T TRIML1 Silent p.L257L 0.34 TCGA-73-4666-01 4 26490990 26490990 T G CCKAR Missense_Mutation p.N77H 0.27 deleterious(0) probably_damaging(1) TCGA-73-4666-01 4 3427249 3427249 G T RGS12 Missense_Mutation p.R1098L 0.29 deleterious(0) probably_damaging(0.999) TCGA-73-4666-01 4 36150077 36150077 C T ARAP2 Missense_Mutation p.G984R 0.36 deleterious(0) probably_damaging(0.999) TCGA-73-4666-01 4 55972900 55972900 A G KDR Missense_Mutation p.I497T 0.22 deleterious(0) benign(0.064) TCGA-73-4666-01 4 55981184 55981184 G T KDR Missense_Mutation p.P172H 0.26 deleterious(0) probably_damaging(0.996) TCGA-73-4666-01 4 55981185 55981185 G T KDR Missense_Mutation p.P172T 0.26 deleterious(0.02) possibly_damaging(0.831) TCGA-73-4666-01 4 71655362 71655362 A T RUFY3 Intron 0.16 TCGA-73-4666-01 4 73013093 73013093 T A NPFFR2 Missense_Mutation p.L378H 0.25 deleterious(0) probably_damaging(1) TCGA-73-4666-01 4 87080500 87080500 G A MAPK10 Missense_Mutation p.R63C 0.28 deleterious(0.02) probably_damaging(1) TCGA-73-4666-01 4 89022469 89022469 G T ABCG2 Missense_Mutation p.A427D 0.13 deleterious(0.01) benign(0.392) TCGA-73-4666-01 4 994668 994668 A C IDUA Splice_Site p.X129_splice 0.17 TCGA-73-4666-01 5 11199699 11199699 G A CTNND2 Silent p.A612A 0.33 TCGA-73-4666-01 5 112769842 112769842 C A TSSK1B Missense_Mutation p.R232L 0.41 deleterious(0.01) possibly_damaging(0.616) TCGA-73-4666-01 5 115249134 115249134 A G AP3S1 Missense_Mutation p.I177V 0.07 tolerated_low_confidence(0.17) benign(0.023) TCGA-73-4666-01 5 115351451 115351451 T A AQPEP Silent p.A915A 0.37 TCGA-73-4666-01 5 122950054 122950054 A C CSNK1G3 Missense_Mutation p.K444N 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.837) TCGA-73-4666-01 5 129019893 129019893 C A ADAMTS19 Missense_Mutation p.S909R 0.39 deleterious(0.01) benign(0.033) TCGA-73-4666-01 5 129040017 129040017 C T ADAMTS19 Missense_Mutation p.P1076L 0.39 deleterious(0) probably_damaging(0.996) TCGA-73-4666-01 5 137454515 137454515 C A NME5 Missense_Mutation p.D183Y 0.12 deleterious(0) probably_damaging(0.947) TCGA-73-4666-01 5 139216501 139216501 G T PSD2 Silent p.L503L 0.39 TCGA-73-4666-01 5 140187200 140187200 C A PCDHA4 Missense_Mutation p.A143E 0.17 tolerated_low_confidence(0.08) possibly_damaging(0.863) TCGA-73-4666-01 5 140228043 140228043 G T PCDHA9 5'UTR 0.12 TCGA-73-4666-01 5 140433071 140433071 G T PCDHB1 Silent p.L672L 0.16 TCGA-73-4666-01 5 140562563 140562563 G T PCDHB16 Silent p.P143P 0.29 TCGA-73-4666-01 5 140563490 140563490 C T PCDHB16 Silent p.T452T 0.30 TCGA-73-4666-01 5 140563649 140563649 C A PCDHB16 Silent p.S505S 0.26 TCGA-73-4666-01 5 140615779 140615779 G T PCDHB18 RNA 0.36 TCGA-73-4666-01 5 148758826 148758826 G T IL17B 5'UTR 0.51 TCGA-73-4666-01 5 150275752 150275752 T A ZNF300 Missense_Mutation p.E366V 0.13 deleterious(0) probably_damaging(0.998) TCGA-73-4666-01 5 150921910 150921910 C A FAT2 Silent p.A2926A 0.12 TCGA-73-4666-01 5 151771875 151771875 G T NMUR2 Silent p.T375T 0.37 TCGA-73-4666-01 5 151784290 151784290 C G NMUR2 Missense_Mutation p.V129L 0.13 deleterious(0) probably_damaging(0.999) TCGA-73-4666-01 5 154395531 154395531 G T KIF4B Silent p.T704T 0.41 TCGA-73-4666-01 5 156747733 156747733 T G CYFIP2 Missense_Mutation p.L506V 0.32 tolerated(0.09) possibly_damaging(0.481) TCGA-73-4666-01 5 159781811 159781811 C G C1QTNF2 Missense_Mutation p.G115R 0.32 deleterious(0) unknown(0) TCGA-73-4666-01 5 161302634 161302634 T A GABRA1 Missense_Mutation p.L182Q 0.15 deleterious(0) possibly_damaging(0.825) TCGA-73-4666-01 5 161576210 161576210 C A GABRG2 Missense_Mutation p.S380Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-73-4666-01 5 167489128 167489128 C G TENM2 Missense_Mutation p.T458R 0.35 tolerated(0.13) benign(0.04) TCGA-73-4666-01 5 169469116 169469116 G A DOCK2 Missense_Mutation p.G1286S 0.39 tolerated(0.68) benign(0.001) TCGA-73-4666-01 5 170305133 170305133 T C RANBP17 Silent p.H17H 0.18 TCGA-73-4666-01 5 176026654 176026654 G T GPRIN1 Missense_Mutation p.P61H 0.13 deleterious(0.01) possibly_damaging(0.505) TCGA-73-4666-01 5 176885479 176885479 G A DBN1 Silent p.T454T 0.35 TCGA-73-4666-01 5 177309510 177309510 T A RP11-423H2.1 RNA 0.14 TCGA-73-4666-01 5 178506304 178506304 C T ZNF354C Silent p.L291L 0.22 TCGA-73-4666-01 5 180659677 180659677 C T TRIM41 Silent p.L310L 0.37 TCGA-73-4666-01 5 23521214 23521214 C A PRDM9 Nonsense_Mutation p.S145* 0.25 TCGA-73-4666-01 5 35954378 35954378 T C UGT3A1 Missense_Mutation p.M500V 0.17 tolerated(0.66) benign(0.001) TCGA-73-4666-01 5 43382065 43382065 C A CCL28 Missense_Mutation p.G94V 0.20 tolerated(0.05) benign(0.086) TCGA-73-4666-01 5 64447678 64447678 G T ADAMTS6 Silent p.T1113T 0.14 TCGA-73-4666-01 5 70808256 70808256 G T BDP1 Splice_Site p.X1416_splice 0.24 TCGA-73-4666-01 5 75902107 75902107 C T IQGAP2 Nonsense_Mutation p.Q446* 0.09 TCGA-73-4666-01 5 7695931 7695931 C A ADCY2 Silent p.V312V 0.19 TCGA-73-4666-01 5 82833774 82833774 C A VCAN Missense_Mutation p.T1651K 0.45 tolerated(1) benign(0.03) TCGA-73-4666-01 5 92929574 92929574 G A NR2F1 3'UTR 0.23 TCGA-73-4666-01 5 93076803 93076803 C A POU5F2 Missense_Mutation p.G156V 0.19 deleterious(0) probably_damaging(0.996) TCGA-73-4666-01 5 93217245 93217245 C A FAM172A Missense_Mutation p.K239N 0.33 deleterious(0.02) possibly_damaging(0.722) TCGA-73-4666-01 5 94956174 94956174 C T GPR150 Silent p.C65C 0.43 TCGA-73-4666-01 6 110714065 110714065 C A DDO Silent p.V341V 0.39 TCGA-73-4666-01 6 112671517 112671517 C A RFPL4B Missense_Mutation p.R203S 0.43 tolerated(0.52) benign(0.009) TCGA-73-4666-01 6 121401997 121401997 C G TBC1D32 Missense_Mutation p.E1232Q 0.50 deleterious(0.02) possibly_damaging(0.76) TCGA-73-4666-01 6 132909856 132909856 C G TAAR5 Missense_Mutation p.V324L 0.39 tolerated(0.11) benign(0.001) TCGA-73-4666-01 6 160199279 160199279 A G ACAT2 Silent p.A330A 0.46 TCGA-73-4666-01 6 161016486 161016486 C A LPA Missense_Mutation p.W1123C 0.40 deleterious(0) probably_damaging(0.996) TCGA-73-4666-01 6 20490840 20490840 A G E2F3 3'UTR 0.69 TCGA-73-4666-01 6 31747922 31747922 G A VARS Silent p.G978G 0.60 TCGA-73-4666-01 6 47251704 47251704 C A TNFRSF21 Nonsense_Mutation p.E405* 0.62 TCGA-73-4666-01 6 50016286 50016286 C - DEFB112 Frame_Shift_Del p.E27Kfs*58 0.32 TCGA-73-4666-01 6 53372308 53372311 TATC - GCLC Frame_Shift_Del p.D351Kfs*29 0.44 TCGA-73-4666-01 6 53516934 53516934 C A KLHL31 Missense_Mutation p.R456L 0.72 tolerated(0.12) probably_damaging(1) TCGA-73-4666-01 7 100190686 100190686 C T FBXO24 Intron 0.18 TCGA-73-4666-01 7 100349490 100349490 A G ZAN Missense_Mutation p.K588E 0.19 benign(0.013) TCGA-73-4666-01 7 100849495 100849495 C A PLOD3 3'UTR 0.09 TCGA-73-4666-01 7 103205892 103205892 A C RELN Missense_Mutation p.S1681R 0.09 tolerated(0.09) benign(0.282) TCGA-73-4666-01 7 113558901 113558901 C A PPP1R3A Missense_Mutation p.D51Y 0.10 deleterious(0.02) probably_damaging(0.968) TCGA-73-4666-01 7 11501699 11501699 A T THSD7A Missense_Mutation p.C814S 0.19 deleterious(0) probably_damaging(1) TCGA-73-4666-01 7 121678865 121678865 T A PTPRZ1 Silent p.A1808A 0.68 TCGA-73-4666-01 7 123269175 123269175 C A ASB15 Missense_Mutation p.P376Q 0.10 deleterious(0) probably_damaging(0.93) TCGA-73-4666-01 7 126173519 126173519 C A GRM8 Missense_Mutation p.M639I 0.12 tolerated(0.25) possibly_damaging(0.505) TCGA-73-4666-01 7 131925827 131925827 G T PLXNA4 Missense_Mutation p.N534K 0.08 deleterious(0) possibly_damaging(0.595) TCGA-73-4666-01 7 141762468 141762468 C A MGAM Missense_Mutation p.P1408Q 0.64 deleterious(0.03) probably_damaging(0.956) TCGA-73-4666-01 7 142045394 142045394 T A TRBV4-2 Missense_Mutation p.L11H 0.29 deleterious(0) unknown(0) TCGA-73-4666-01 7 142659392 142659392 G A KEL 5'UTR 0.11 TCGA-73-4666-01 7 142985564 142985564 G T CASP2 Missense_Mutation p.A6S 0.62 deleterious_low_confidence(0.03) benign(0.06) TCGA-73-4666-01 7 148311136 148311136 G C C7orf33 Missense_Mutation p.K69N 0.53 deleterious_low_confidence(0.02) possibly_damaging(0.607) TCGA-73-4666-01 7 154862900 154862900 C A HTR5A-AS1 Missense_Mutation p.R38S 0.07 deleterious_low_confidence(0.01) benign(0.402) TCGA-73-4666-01 7 18869106 18869106 G T HDAC9 Missense_Mutation p.V801F 0.33 deleterious(0) possibly_damaging(0.859) TCGA-73-4666-01 7 20198853 20198853 G A MACC1 Silent p.P377P 0.44 TCGA-73-4666-01 7 32910171 32910171 T C KBTBD2 Missense_Mutation p.I220V 0.19 tolerated(0.23) benign(0.175) TCGA-73-4666-01 7 4008919 4008919 G T SDK1 Missense_Mutation p.R526L 0.33 deleterious(0.01) benign(0.047) TCGA-73-4666-01 7 44047193 44047193 G A SPDYE1 Intron 0.15 TCGA-73-4666-01 7 48311611 48311611 G C ABCA13 Missense_Mutation p.R783T 0.38 benign(0.011) TCGA-73-4666-01 7 4900849 4900849 C A PAPOLB Missense_Mutation p.C197F 0.32 deleterious(0) probably_damaging(1) TCGA-73-4666-01 7 51258590 51258590 G A COBL Silent p.N214N 0.23 TCGA-73-4666-01 7 66274076 66274076 C T KCTD7 Silent p.I427I 0.08 TCGA-73-4666-01 7 73636006 73636006 C G LAT2 Missense_Mutation p.F124L 0.13 tolerated(0.25) benign(0.002) TCGA-73-4666-01 7 74211815 74211815 T C GTF2IRD2 Missense_Mutation p.N679S 0.62 deleterious(0.02) benign(0.427) TCGA-73-4666-01 7 92404042 92404042 G T CDK6 Missense_Mutation p.P113T 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-73-4666-01 7 99771579 99771579 G A GPC2 Silent p.L257L 0.18 TCGA-73-4666-01 8 105001603 105001603 G T RIMS2 Missense_Mutation p.D1000Y 0.13 deleterious_low_confidence(0) possibly_damaging(0.596) TCGA-73-4666-01 8 107773614 107773614 C G ABRA Missense_Mutation p.S266T 0.14 deleterious(0) probably_damaging(0.999) TCGA-73-4666-01 8 134239843 134239843 C A WISP1 Missense_Mutation p.R332S 0.35 deleterious(0.05) probably_damaging(0.958) TCGA-73-4666-01 8 136594267 136594267 G A KHDRBS3 Missense_Mutation p.G253E 0.29 deleterious(0.01) probably_damaging(1) TCGA-73-4666-01 8 141542158 141542158 G A AGO2 Silent p.T855T 0.20 TCGA-73-4666-01 8 141570586 141570586 A G AGO2 Missense_Mutation p.F181S 0.10 deleterious(0) possibly_damaging(0.812) TCGA-73-4666-01 8 145012371 145012371 C T PLEC Missense_Mutation p.R208H 0.32 unknown(0) TCGA-73-4666-01 8 145541627 145541627 G T DGAT1 Missense_Mutation p.R269S 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-73-4666-01 8 21769797 21769797 C T DOK2 Silent p.A96A 0.33 TCGA-73-4666-01 8 28206278 28206278 C G ZNF395 Silent p.T500T 0.17 TCGA-73-4666-01 8 3038632 3038632 T G CSMD1 Missense_Mutation p.T1909P 0.11 probably_damaging(0.947) TCGA-73-4666-01 8 33246950 33246950 C T FUT10 Missense_Mutation p.R248Q 0.07 tolerated(0.16) benign(0.015) TCGA-73-4666-01 8 38099825 38099825 A G DDHD2 Missense_Mutation p.Q257R 0.14 tolerated(0.36) benign(0.197) TCGA-73-4666-01 8 53038615 53038615 C A ST18 Missense_Mutation p.G918W 0.36 deleterious(0) probably_damaging(0.97) TCGA-73-4666-01 8 59059927 59059927 G A FAM110B 3'UTR 0.16 TCGA-73-4666-01 8 618725 618725 C A ERICH1 Silent p.A377A 0.37 TCGA-73-4666-01 8 72182002 72182002 A C EYA1 Silent p.T341T 0.35 TCGA-73-4666-01 8 97156985 97156985 G C GDF6 Missense_Mutation p.R392G 0.45 deleterious(0) probably_damaging(1) TCGA-73-4666-01 9 104433015 104433015 C A GRIN3A Missense_Mutation p.S560I 0.52 deleterious(0.04) benign(0.434) TCGA-73-4666-01 9 105767378 105767378 A T CYLC2 Silent p.L155L 0.63 TCGA-73-4666-01 9 105767379 105767379 G T CYLC2 Missense_Mutation p.D156Y 0.63 deleterious(0.02) unknown(0) TCGA-73-4666-01 9 131708450 131708450 T C DOLK Missense_Mutation p.Y378C 0.59 deleterious(0.01) probably_damaging(0.927) TCGA-73-4666-01 9 135865147 135865147 C T GFI1B Missense_Mutation p.R223C 0.53 deleterious(0) possibly_damaging(0.773) TCGA-73-4666-01 9 135865148 135865148 G T GFI1B Missense_Mutation p.R223L 0.50 deleterious(0) benign(0.175) TCGA-73-4666-01 9 35075050 35075050 T A FANCG Nonsense_Mutation p.K504* 0.31 TCGA-73-4666-01 9 37746564 37746564 G T FRMPD1 Missense_Mutation p.R1512L 0.31 tolerated(0.32) benign(0.018) TCGA-73-4666-01 9 40702812 40702812 C A SPATA31A3 Missense_Mutation p.P157T 0.33 deleterious(0.01) probably_damaging(0.958) TCGA-73-4666-01 9 79853290 79853290 A G VPS13A Missense_Mutation p.K630E 0.49 deleterious(0) possibly_damaging(0.852) TCGA-73-4666-01 9 86278912 86278912 C A UBQLN1 Nonsense_Mutation p.G499* 0.53 TCGA-73-4666-01 9 95015708 95015708 C T IARS Missense_Mutation p.R722H 0.65 tolerated(0.06) benign(0.219) TCGA-73-4666-01 X 125299020 125299020 G T DCAF12L2 Silent p.S296S 0.16 TCGA-73-4666-01 X 12735849 12735849 G T FRMPD4 Silent p.S968S 0.32 TCGA-73-4666-01 X 128633819 128633819 C G SMARCA1 Splice_Site p.X390_splice 0.16 TCGA-73-4666-01 X 128926692 128926692 C G SASH3 Missense_Mutation p.I227M 0.16 deleterious(0) probably_damaging(0.999) TCGA-73-4666-01 X 128940160 128940160 C A ZDHHC9 3'UTR 0.23 TCGA-73-4666-01 X 137793019 137793019 G T FGF13 Intron 0.15 TCGA-73-4666-01 X 138619188 138619188 C T F9 Silent p.N36N 0.32 TCGA-73-4666-01 X 149787523 149787523 C A MTM1 Missense_Mutation p.L119M 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-73-4666-01 X 149807500 149807500 G T MTM1 Splice_Site p.X176_splice 0.18 TCGA-73-4666-01 X 152226624 152226624 C A PNMA3 Silent p.G404G 0.15 TCGA-73-4666-01 X 153095780 153095780 G T PDZD4 5'UTR 0.17 TCGA-73-4666-01 X 153296370 153296370 G C MECP2 Missense_Mutation p.I315M 0.20 deleterious(0) probably_damaging(0.996) TCGA-73-4666-01 X 16859727 16859727 T A TXLNG Silent p.P475P 0.21 TCGA-73-4666-01 X 3241311 3241311 A T MXRA5 Silent p.I805I 0.23 TCGA-73-4666-01 X 43603416 43603416 A T MAOA Nonsense_Mutation p.K479* 0.20 TCGA-73-4666-01 X 50094666 50094666 G A CCNB3 Silent p.L1384L 0.27 TCGA-73-4666-01 X 53674396 53674396 A T HUWE1 Missense_Mutation p.L89Q 0.19 possibly_damaging(0.643) TCGA-73-4666-01 X 70331295 70331295 C A IL2RG Missense_Mutation p.G32V 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.755) TCGA-73-4666-01 X 76920178 76920178 T C ATRX Missense_Mutation p.K1300R 0.46 probably_damaging(0.995) TCGA-73-4666-01 X 78216121 78216121 C A P2RY10 Missense_Mutation p.S35Y 0.36 tolerated(0.8) benign(0.005) TCGA-73-4666-01 X 79945592 79945592 C A BRWD3 Splice_Site p.X1201_splice 0.17 TCGA-73-4666-01 X 85213885 85213885 C A CHM Missense_Mutation p.R267L 0.12 tolerated(0.51) benign(0.023) TCGA-73-4666-01 X 91137922 91137922 C A PCDH11X Intron 0.31 TCGA-73-4668-01 10 101716089 101716089 G A DNMBP Missense_Mutation p.A381V 0.50 tolerated_low_confidence(0.55) benign(0.021) TCGA-73-4668-01 10 103587108 103587108 G T KCNIP2 3'Flank 0.47 TCGA-73-4668-01 10 106937735 106937735 A T SORCS3 Intron 0.53 TCGA-73-4668-01 10 118969235 118969235 C A KCNK18 Missense_Mutation p.P194T 0.57 tolerated(0.12) benign(0.139) TCGA-73-4668-01 10 124457454 124457454 G T C10orf120 Missense_Mutation p.P268H 0.46 deleterious(0) probably_damaging(0.977) TCGA-73-4668-01 10 135053656 135053656 T A VENTX Missense_Mutation p.V208E 0.62 deleterious(0.05) possibly_damaging(0.676) TCGA-73-4668-01 10 135053658 135053658 G T VENTX Missense_Mutation p.A209S 0.60 deleterious(0.01) benign(0.004) TCGA-73-4668-01 10 135345697 135345697 G T CYP2E1 Missense_Mutation p.R186L 0.21 tolerated(0.08) benign(0.433) TCGA-73-4668-01 10 15713616 15713616 C T ITGA8 Missense_Mutation p.G278E 0.10 deleterious(0.04) possibly_damaging(0.847) TCGA-73-4668-01 10 17199437 17199437 T C TRDMT1 Intron 0.18 TCGA-73-4668-01 10 18266952 18266952 C A SLC39A12 Missense_Mutation p.F291L 0.18 tolerated(1) benign(0) TCGA-73-4668-01 10 27964149 27964149 A T MKX 3'UTR 0.23 TCGA-73-4668-01 10 30315207 30315207 G A KIAA1462 Silent p.A1290A 0.43 TCGA-73-4668-01 10 30315765 30315765 C T KIAA1462 Silent p.R1104R 0.23 TCGA-73-4668-01 10 32337440 32337440 T C KIF5B Missense_Mutation p.T56A 0.21 tolerated(0.32) benign(0.246) TCGA-73-4668-01 10 43609932 43609932 A G RET Silent p.P628P 0.29 TCGA-73-4668-01 10 43651103 43651103 A G CSGALNACT2 Missense_Mutation p.E169G 0.30 deleterious(0) probably_damaging(0.999) TCGA-73-4668-01 10 50819687 50819687 T A SLC18A3 Missense_Mutation p.C301S 0.24 tolerated(0.47) benign(0.07) TCGA-73-4668-01 10 50824643 50824643 G C CHAT Missense_Mutation p.E128Q 0.19 tolerated(0.7) benign(0.004) TCGA-73-4668-01 10 64973792 64973792 G A JMJD1C Missense_Mutation p.T712I 0.17 deleterious(0) possibly_damaging(0.703) TCGA-73-4668-01 10 69832693 69832693 C A HERC4 Missense_Mutation p.C58F 0.43 deleterious(0.03) probably_damaging(0.974) TCGA-73-4668-01 10 73826772 73826772 G A SPOCK2 Silent p.A272A 0.11 TCGA-73-4668-01 10 7768935 7768935 T C ITIH2 Missense_Mutation p.I336T 0.33 deleterious(0) probably_damaging(0.986) TCGA-73-4668-01 10 84718748 84718748 A T NRG3 Missense_Mutation p.N401Y 0.08 deleterious(0.04) benign(0.413) TCGA-73-4668-01 10 84745402 84745402 C A NRG3 3'Flank 0.45 TCGA-73-4668-01 10 85971993 85971993 G T CDHR1 Missense_Mutation p.A538S 0.60 tolerated(0.61) probably_damaging(0.949) TCGA-73-4668-01 10 98808755 98808755 G T SLIT1 Missense_Mutation p.N474K 0.50 tolerated(0.14) probably_damaging(0.999) TCGA-73-4668-01 10 99376452 99376452 C - MORN4 Frame_Shift_Del p.G92Afs*3 0.39 TCGA-73-4668-01 11 101946661 101946661 G T C11orf70 Nonsense_Mutation p.E165* 0.31 TCGA-73-4668-01 11 102323343 102323343 G A TMEM123 Silent p.G4G 0.33 TCGA-73-4668-01 11 106810788 106810788 C A GUCY1A2 Missense_Mutation p.G202C 0.31 deleterious(0.02) probably_damaging(0.985) TCGA-73-4668-01 11 113608356 113608356 C A ZW10 Missense_Mutation p.A652S 0.34 tolerated(0.18) benign(0.026) TCGA-73-4668-01 11 113608357 113608357 C A ZW10 Missense_Mutation p.K651N 0.34 deleterious(0) probably_damaging(0.992) TCGA-73-4668-01 11 117711080 117711080 G T FXYD6-FXYD2 Missense_Mutation p.P59H 0.36 tolerated(0.18) unknown(0) TCGA-73-4668-01 11 123754037 123754037 G T TMEM225 Nonsense_Mutation p.C162* 0.35 TCGA-73-4668-01 11 123909148 123909148 G T OR10G7 Silent p.A187A 0.29 TCGA-73-4668-01 11 124180032 124180032 T C OR8D1 Missense_Mutation p.T211A 0.08 tolerated(0.18) possibly_damaging(0.747) TCGA-73-4668-01 11 124180094 124180094 G T OR8D1 Missense_Mutation p.S190Y 0.27 deleterious(0) probably_damaging(0.989) TCGA-73-4668-01 11 126215448 126215448 C G DCPS Silent p.T318T 0.07 TCGA-73-4668-01 11 30432893 30432893 G C MPPED2 3'UTR 0.50 TCGA-73-4668-01 11 31815010 31815010 G A PAX6 Silent p.T350T 0.31 TCGA-73-4668-01 11 33053077 33053077 T A DEPDC7 Missense_Mutation p.S312R 0.43 tolerated(0.1) benign(0.001) TCGA-73-4668-01 11 44129611 44129611 G C EXT2 Missense_Mutation p.D150H 0.51 deleterious(0.02) benign(0.382) TCGA-73-4668-01 11 4945495 4945495 G T OR51G1 Silent p.L25L 0.20 TCGA-73-4668-01 11 50003169 50003169 G T OR4C12 Missense_Mutation p.A290D 0.25 tolerated_low_confidence(0.11) benign(0.282) TCGA-73-4668-01 11 51515839 51515839 C A OR4C46 Silent p.A186A 0.35 TCGA-73-4668-01 11 55322295 55322295 G T OR4C15 Missense_Mutation p.M171I 0.28 deleterious_low_confidence(0.02) benign(0.165) TCGA-73-4668-01 11 5537492 5537492 C A UBQLNL Missense_Mutation p.L60F 0.18 deleterious(0) benign(0.309) TCGA-73-4668-01 11 56468369 56468369 G T OR9G1 Missense_Mutation p.R169L 0.12 deleterious(0.01) benign(0.152) TCGA-73-4668-01 11 5717680 5717680 A G TRIM22 Missense_Mutation p.H73R 0.39 deleterious(0.01) benign(0.052) TCGA-73-4668-01 11 57971087 57971087 G T OR1S2 Missense_Mutation p.H189Q 0.31 deleterious(0.02) probably_damaging(0.982) TCGA-73-4668-01 11 58275328 58275328 C A OR5B21 Missense_Mutation p.R84L 0.21 tolerated_low_confidence(1) benign(0.005) TCGA-73-4668-01 11 60711284 60711284 C T SLC15A3 Silent p.L291L 0.22 TCGA-73-4668-01 11 62554784 62554784 G T TAF6L 3'UTR 0.29 TCGA-73-4668-01 11 6263036 6263036 G T CNGA4 Intron 0.21 TCGA-73-4668-01 11 67864518 67864518 G A CHKA Missense_Mutation p.L144F 0.36 deleterious(0) probably_damaging(0.985) TCGA-73-4668-01 11 68514725 68514725 T A MTL5 Missense_Mutation p.E194V 0.22 deleterious(0) possibly_damaging(0.634) TCGA-73-4668-01 11 6891376 6891376 C A OR10A2 Missense_Mutation p.L131M 0.39 tolerated(0.1) possibly_damaging(0.86) TCGA-73-4668-01 11 7982367 7982367 C A NLRP10 Missense_Mutation p.K264N 0.40 tolerated(0.3) benign(0.016) TCGA-73-4668-01 11 89431852 89431852 T A FOLH1B RNA 0.43 TCGA-73-4668-01 11 89531490 89531490 G C TRIM49 Missense_Mutation p.C389W 0.31 tolerated(0.11) benign(0.016) TCGA-73-4668-01 11 92616529 92616529 C A FAT3 Silent p.R4303R 0.35 TCGA-73-4668-01 12 100452831 100452831 G A UHRF1BP1L Nonsense_Mutation p.Q742* 0.12 TCGA-73-4668-01 12 102591218 102591218 G T PARPBP 3'Flank 0.25 TCGA-73-4668-01 12 123186603 123186603 C G HCAR2 3'UTR 0.43 TCGA-73-4668-01 12 128899865 128899865 C A TMEM132C Missense_Mutation p.P225H 0.45 deleterious(0) benign(0.36) TCGA-73-4668-01 12 132476772 132476772 G T EP400 Nonsense_Mutation p.E912* 0.20 TCGA-73-4668-01 12 29463958 29463958 C T FAR2 Intron 0.17 TCGA-73-4668-01 12 29524531 29524531 C T ERGIC2 Silent p.L12L 0.35 TCGA-73-4668-01 12 29725102 29725102 C A TMTC1 Missense_Mutation p.A490S 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-73-4668-01 12 31435745 31435745 T C FAM60A Silent p.T189T 0.22 TCGA-73-4668-01 12 43823488 43823488 C A ADAMTS20 Nonsense_Mutation p.E1141* 0.35 TCGA-73-4668-01 12 43847848 43847848 C A ADAMTS20 Missense_Mutation p.R541L 0.34 tolerated(0.11) benign(0.022) TCGA-73-4668-01 12 50834321 50834321 G T LARP4 Missense_Mutation p.D247Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-73-4668-01 12 52884515 52884515 C A KRT6A Missense_Mutation p.E305D 0.40 deleterious(0) probably_damaging(0.988) TCGA-73-4668-01 12 56750038 56750038 T A STAT2 Nonsense_Mutation p.K55* 0.21 TCGA-73-4668-01 12 63974471 63974471 A - DPY19L2 Frame_Shift_Del p.L624Yfs*33 0.30 TCGA-73-4668-01 12 6424235 6424235 G A PLEKHG6 Missense_Mutation p.R120Q 0.29 deleterious(0.05) possibly_damaging(0.573) TCGA-73-4668-01 12 6664921 6664921 T A IFFO1 Missense_Mutation p.H92L 0.14 deleterious(0) possibly_damaging(0.844) TCGA-73-4668-01 12 6760378 6760378 C G ING4 Missense_Mutation p.E245Q 0.50 deleterious(0.01) probably_damaging(0.948) TCGA-73-4668-01 12 72332773 72332773 C G TPH2 Missense_Mutation p.P3A 0.21 deleterious_low_confidence(0.01) benign(0.183) TCGA-73-4668-01 12 76454042 76454042 T G NAP1L1 Missense_Mutation p.K75T 0.20 deleterious(0) probably_damaging(0.925) TCGA-73-4668-01 12 78225462 78225462 C T NAV3 Missense_Mutation p.A74V 0.11 tolerated_low_confidence(0.59) benign(0.041) TCGA-73-4668-01 12 78400408 78400408 G T NAV3 Missense_Mutation p.D364Y 0.40 deleterious_low_confidence(0) possibly_damaging(0.534) TCGA-73-4668-01 12 91502412 91502412 C A LUM Missense_Mutation p.L115F 0.33 deleterious(0.01) possibly_damaging(0.539) TCGA-73-4668-01 12 9907173 9907173 G T CD69 Intron 0.57 TCGA-73-4668-01 12 9907174 9907174 G T CD69 Intron 0.56 TCGA-73-4668-01 13 101294522 101294522 C G TMTC4 Silent p.L228L 0.45 TCGA-73-4668-01 13 20235960 20235960 C T MPHOSPH8 Silent p.L638L 0.15 TCGA-73-4668-01 13 23929924 23929924 C T SACS Missense_Mutation p.R276H 0.36 probably_damaging(0.997) TCGA-73-4668-01 13 26114522 26114522 G C ATP8A2 Missense_Mutation p.R216P 0.42 deleterious(0) probably_damaging(0.991) TCGA-73-4668-01 13 28519467 28519467 G C ATP5EP2 Missense_Mutation p.R24T 0.11 deleterious(0) possibly_damaging(0.855) TCGA-73-4668-01 13 46559510 46559510 T A ZC3H13 Nonsense_Mutation p.R548* 0.13 TCGA-73-4668-01 13 50510295 50510295 G C SPRYD7 Missense_Mutation p.P26R 0.27 deleterious(0.03) probably_damaging(0.974) TCGA-73-4668-01 13 52158888 52158888 G T WDFY2 Missense_Mutation p.G22V 0.41 deleterious(0) benign(0.08) TCGA-73-4668-01 13 52439526 52439526 G A CCDC70 Silent p.P4P 0.21 TCGA-73-4668-01 13 52971467 52971467 C T THSD1 Silent p.L307L 0.47 TCGA-73-4668-01 13 73333982 73333982 T - DIS3 Frame_Shift_Del p.N943Tfs*12 0.40 TCGA-73-4668-01 14 100166391 100166391 G T CYP46A1 Missense_Mutation p.E132D 0.13 tolerated(0.5) benign(0.011) TCGA-73-4668-01 14 101419754 101419754 G T SNORD114-3 RNA 0.20 TCGA-73-4668-01 14 28733848 28733848 G T BNIP3P1 RNA 0.20 TCGA-73-4668-01 14 45468632 45468632 G C FAM179B Missense_Mutation p.C757S 0.18 tolerated(0.73) benign(0.005) TCGA-73-4668-01 14 47120296 47120296 C A RPL10L Nonstop_Mutation p.*215Lext*? 0.48 TCGA-73-4668-01 14 47504483 47504483 T A MDGA2 Missense_Mutation p.Q517L 0.19 tolerated(0.11) benign(0.164) TCGA-73-4668-01 14 50750751 50750751 C A L2HGDH Missense_Mutation p.G181C 0.17 deleterious(0.05) probably_damaging(1) TCGA-73-4668-01 14 50750752 50750752 C A L2HGDH Splice_Site p.X181_splice 0.17 TCGA-73-4668-01 14 55475401 55475401 G T WDHD1 Missense_Mutation p.S126R 0.34 deleterious(0) possibly_damaging(0.678) TCGA-73-4668-01 14 61519096 61519096 G C SLC38A6 Intron 0.40 TCGA-73-4668-01 14 67940629 67940629 G C TMEM229B Silent p.A4A 0.31 TCGA-73-4668-01 14 69346732 69346732 T A ACTN1 Missense_Mutation p.I743F 0.23 deleterious(0) probably_damaging(0.957) TCGA-73-4668-01 14 70713090 70713090 G T ADAM21P1 RNA 0.11 TCGA-73-4668-01 14 75078484 75078484 C A LTBP2 Missense_Mutation p.R55L 0.39 tolerated(0.39) possibly_damaging(0.726) TCGA-73-4668-01 14 93649561 93649561 G A MOAP1 Nonsense_Mutation p.Q343* 0.41 TCGA-73-4668-01 15 100331184 100331184 T C AC090825.1 5'Flank 0.54 TCGA-73-4668-01 15 25650634 25650634 C A UBE3A Missense_Mutation p.Q15H 0.47 tolerated_low_confidence(0.39) benign(0) TCGA-73-4668-01 15 25936908 25936908 T A ATP10A Missense_Mutation p.Q1040L 0.53 deleterious(0) probably_damaging(0.978) TCGA-73-4668-01 15 33842358 33842358 C A RYR3 Intron 0.54 TCGA-73-4668-01 15 33936616 33936616 G T RYR3 Missense_Mutation p.G1221C 0.36 probably_damaging(1) TCGA-73-4668-01 15 34016338 34016338 C G RYR3 Silent p.A2291A 0.45 TCGA-73-4668-01 15 42032402 42032402 G T MGA Splice_Site p.X1529_splice 0.43 TCGA-73-4668-01 15 64966474 64966474 C T ZNF609 Missense_Mutation p.P474L 0.48 deleterious(0.04) benign(0.05) TCGA-73-4668-01 15 68504182 68504182 C A CLN6 Missense_Mutation p.R106L 0.43 deleterious(0.01) possibly_damaging(0.538) TCGA-73-4668-01 15 70959250 70959250 C G UACA Missense_Mutation p.C1258S 0.39 tolerated(0.31) possibly_damaging(0.502) TCGA-73-4668-01 15 75013543 75013543 T C CYP1A1 Missense_Mutation p.H388R 0.56 deleterious(0) probably_damaging(1) TCGA-73-4668-01 15 78807396 78807396 C T HYKK Nonsense_Mutation p.Q142* 0.55 TCGA-73-4668-01 15 83333147 83333147 C G AP3B2 Missense_Mutation p.D726H 0.21 tolerated(0.16) possibly_damaging(0.861) TCGA-73-4668-01 16 1129274 1129274 G T SSTR5 Missense_Mutation p.D136Y 0.27 deleterious(0) probably_damaging(0.998) TCGA-73-4668-01 16 1398189 1398189 G T BAIAP3 Missense_Mutation p.G1116V 0.33 deleterious(0) probably_damaging(1) TCGA-73-4668-01 16 18908270 18908270 C G SMG1 Missense_Mutation p.S34T 0.38 deleterious_low_confidence(0.04) benign(0.024) TCGA-73-4668-01 16 19078933 19078933 G T COQ7 5'UTR 0.21 TCGA-73-4668-01 16 19498264 19498264 C G TMC5 Intron 0.12 TCGA-73-4668-01 16 20359896 20359896 C T UMOD Missense_Mutation p.V243M 0.57 deleterious(0.02) probably_damaging(0.998) TCGA-73-4668-01 16 2812488 2812488 T C SRRM2 Silent p.A653A 0.19 TCGA-73-4668-01 16 28137079 28137079 C A XPO6 Missense_Mutation p.R566L 0.35 deleterious(0) probably_damaging(0.917) TCGA-73-4668-01 16 29708382 29708382 G C QPRT Silent p.L205L 0.36 TCGA-73-4668-01 16 30666091 30666091 C T PRR14 Missense_Mutation p.P267L 0.30 deleterious(0) probably_damaging(0.995) TCGA-73-4668-01 16 31072581 31072581 C A ZNF668 Silent p.R579R 0.34 TCGA-73-4668-01 16 32890766 32890766 G T SLC6A10P RNA 0.16 TCGA-73-4668-01 16 3613765 3613765 A G NLRC3 Silent p.H438H 0.23 TCGA-73-4668-01 16 47581459 47581459 G C PHKB Missense_Mutation p.S237T 0.22 deleterious(0) possibly_damaging(0.842) TCGA-73-4668-01 16 50325758 50325758 G T ADCY7 Missense_Mutation p.G163C 0.39 deleterious(0.02) benign(0.018) TCGA-73-4668-01 16 56660696 56660696 G T MT1E Intron 0.33 TCGA-73-4668-01 16 67470708 67470708 C A HSD11B2 Silent p.P340P 0.35 TCGA-73-4668-01 16 67574538 67574538 T C FAM65A Silent p.S264S 0.39 TCGA-73-4668-01 16 70573098 70573098 A T SF3B3 Missense_Mutation p.E352V 0.30 deleterious(0) probably_damaging(0.99) TCGA-73-4668-01 16 71715787 71715787 T A PHLPP2 Missense_Mutation p.T253S 0.14 tolerated(1) benign(0.001) TCGA-73-4668-01 16 74927609 74927609 C A WDR59 Silent p.L656L 0.38 TCGA-73-4668-01 16 76481991 76481991 T A CNTNAP4 Silent p.I182I 0.37 TCGA-73-4668-01 16 77398154 77398154 T A ADAMTS18 Silent p.A301A 0.26 TCGA-73-4668-01 16 81213332 81213332 G T PKD1L2 Silent p.L41L 0.30 TCGA-73-4668-01 16 9923360 9923360 C A GRIN2A Missense_Mutation p.A643S 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-73-4668-01 17 11622804 11622804 C A DNAH9 Nonsense_Mutation p.Y1902* 0.09 TCGA-73-4668-01 17 14140072 14140072 G A CDRT15 Nonsense_Mutation p.R27* 0.43 TCGA-73-4668-01 17 2966186 2966186 G T OR1D5 Missense_Mutation p.S239Y 0.47 deleterious(0) probably_damaging(1) TCGA-73-4668-01 17 30377039 30377039 A G LRRC37B Silent p.P898P 0.33 TCGA-73-4668-01 17 33481607 33481607 C A UNC45B Silent p.L162L 0.23 TCGA-73-4668-01 17 33495370 33495370 G T UNC45B Missense_Mutation p.R481L 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-73-4668-01 17 3417247 3417247 A - TRPV3 Frame_Shift_Del p.F780Lfs*50 0.45 TCGA-73-4668-01 17 39274434 39274434 C A KRTAP4-11 Missense_Mutation p.C45F 0.42 deleterious(0) unknown(0) TCGA-73-4668-01 17 3961350 3961350 C A ZZEF1 Missense_Mutation p.Q1701H 0.52 tolerated(0.21) benign(0.396) TCGA-73-4668-01 17 43552535 43552535 T A PLEKHM1 Missense_Mutation p.E285V 0.26 deleterious(0) probably_damaging(0.926) TCGA-73-4668-01 17 44108914 44108914 C A KANSL1 Silent p.S1082S 0.36 TCGA-73-4668-01 17 46691934 46691934 C A HOXB8 Missense_Mutation p.G45C 0.32 deleterious(0) probably_damaging(0.993) TCGA-73-4668-01 17 46805354 46805354 C A HOXB13 Splice_Site p.X201_splice 0.28 TCGA-73-4668-01 17 47120887 47120887 G A IGF2BP1 Missense_Mutation p.G392E 0.34 deleterious(0.02) benign(0.382) TCGA-73-4668-01 17 54893250 54893250 C A C17orf67 5'UTR 0.31 TCGA-73-4668-01 17 56355316 56355316 T A MPO Missense_Mutation p.Q359L 0.34 tolerated(0.39) benign(0.106) TCGA-73-4668-01 17 57724917 57724917 C G CLTC Missense_Mutation p.Q137E 0.28 tolerated(0.81) benign(0.271) TCGA-73-4668-01 17 61562712 61562712 C T ACE Silent p.T679T 0.20 TCGA-73-4668-01 17 61611255 61611255 C A KCNH6 Silent p.S228S 0.48 TCGA-73-4668-01 17 72436178 72436178 G T GPRC5C Missense_Mutation p.G133V 0.42 deleterious(0.03) probably_damaging(0.969) TCGA-73-4668-01 17 72588362 72588362 C T C17orf77 Silent p.L59L 0.36 TCGA-73-4668-01 17 74023232 74023232 C A EVPL Missense_Mutation p.K16N 0.40 deleterious_low_confidence(0.04) unknown(0) TCGA-73-4668-01 17 76045134 76045134 G T TNRC6C 5'UTR 0.32 TCGA-73-4668-01 17 78163574 78163574 A G CARD14 Missense_Mutation p.Q289R 0.29 deleterious(0) benign(0.132) TCGA-73-4668-01 17 78897445 78897445 G T RPTOR Missense_Mutation p.R927L 0.43 deleterious(0.01) benign(0.391) TCGA-73-4668-01 17 8221893 8221893 C A ARHGEF15 Silent p.I595I 0.18 TCGA-73-4668-01 18 13073170 13073170 G T CEP192 Missense_Mutation p.G1868C 0.27 deleterious(0) probably_damaging(1) TCGA-73-4668-01 18 13073171 13073171 G T CEP192 Missense_Mutation p.G1868V 0.27 deleterious(0) probably_damaging(1) TCGA-73-4668-01 18 14542915 14542915 C A POTEC Silent p.T77T 0.21 TCGA-73-4668-01 18 14851733 14851733 A T ANKRD30B Nonsense_Mutation p.R1145* 0.18 TCGA-73-4668-01 18 19424150 19424150 G T MIB1 Missense_Mutation p.R716L 0.39 deleterious(0.05) probably_damaging(0.974) TCGA-73-4668-01 18 22056939 22056939 A T HRH4 Missense_Mutation p.N196Y 0.16 tolerated(0.95) benign(0) TCGA-73-4668-01 18 25532157 25532157 A G CDH2 Missense_Mutation p.F894S 0.35 deleterious(0) probably_damaging(0.999) TCGA-73-4668-01 18 28713983 28713983 T A DSC1 Nonsense_Mutation p.R663* 0.27 TCGA-73-4668-01 18 28911745 28911745 G T DSG1 Missense_Mutation p.R200I 0.25 deleterious(0) possibly_damaging(0.718) TCGA-73-4668-01 18 29617214 29617214 C T RNF125 Silent p.C100C 0.28 TCGA-73-4668-01 18 40853678 40853678 T A SYT4 Missense_Mutation p.H239L 0.32 deleterious(0) probably_damaging(0.967) TCGA-73-4668-01 18 40853766 40853766 C A SYT4 Missense_Mutation p.V210L 0.37 deleterious(0) probably_damaging(0.996) TCGA-73-4668-01 18 40854165 40854165 C A SYT4 Missense_Mutation p.D77Y 0.20 deleterious(0.04) benign(0.109) TCGA-73-4668-01 18 5397212 5397212 C A EPB41L3 Missense_Mutation p.A896S 0.25 tolerated(0.38) benign(0.002) TCGA-73-4668-01 18 60052093 60052093 G C TNFRSF11A Silent p.A559A 0.33 TCGA-73-4668-01 18 61328038 61328038 T C SERPINB3 Missense_Mutation p.Y73C 0.35 tolerated(0.08) benign(0.001) TCGA-73-4668-01 18 61652456 61652456 G T SERPINB8 Missense_Mutation p.D233Y 0.39 deleterious(0) possibly_damaging(0.617) TCGA-73-4668-01 18 65179982 65179982 C G DSEL Missense_Mutation p.G632R 0.26 deleterious(0) probably_damaging(1) TCGA-73-4668-01 18 77171101 77171101 C G NFATC1 Missense_Mutation p.P263A 0.33 tolerated(0.26) benign(0.018) TCGA-73-4668-01 18 77894491 77894491 G C ADNP2 Missense_Mutation p.G399R 0.13 deleterious(0.02) benign(0.178) TCGA-73-4668-01 19 10790525 10790525 A G ILF3 Missense_Mutation p.T261A 0.39 deleterious(0) probably_damaging(0.998) TCGA-73-4668-01 19 13211933 13211933 G T LYL1 Missense_Mutation p.A18E 0.56 deleterious_low_confidence(0.02) benign(0.08) TCGA-73-4668-01 19 15229989 15229989 T C ILVBL Missense_Mutation p.I347V 0.26 tolerated(1) benign(0.007) TCGA-73-4668-01 19 20002661 20002661 G T ZNF253 Missense_Mutation p.C202F 0.53 deleterious(0.02) probably_damaging(1) TCGA-73-4668-01 19 20235932 20235932 G C CTC-260E6.2 RNA 0.76 TCGA-73-4668-01 19 22270984 22270984 G T ZNF257 Missense_Mutation p.M144I 0.51 tolerated(1) benign(0) TCGA-73-4668-01 19 22363155 22363155 C A ZNF676 Missense_Mutation p.G455V 0.46 deleterious(0) probably_damaging(0.98) TCGA-73-4668-01 19 22574549 22574549 G C ZNF98 Silent p.G496G 0.45 TCGA-73-4668-01 19 2426159 2426159 C A TMPRSS9 3'UTR 0.57 TCGA-73-4668-01 19 33122400 33122400 C A ANKRD27 Nonsense_Mutation p.E373* 0.43 TCGA-73-4668-01 19 35790520 35790520 T G MAG Missense_Mutation p.M160R 0.39 tolerated(0.38) benign(0.006) TCGA-73-4668-01 19 38028480 38028480 G T ZNF793 Missense_Mutation p.G307V 0.33 deleterious(0) probably_damaging(1) TCGA-73-4668-01 19 38077718 38077718 T A ZNF571 Intron 0.33 TCGA-73-4668-01 19 38939008 38939008 C A RYR1 Missense_Mutation p.H272N 0.39 possibly_damaging(0.475) TCGA-73-4668-01 19 38976776 38976776 C A RYR1 Silent p.R1827R 0.38 TCGA-73-4668-01 19 39068645 39068646 - T RYR1 Frame_Shift_Ins p.H4754Lfs*3 0.35 TCGA-73-4668-01 19 40195140 40195140 T C LGALS14 5'UTR 0.23 TCGA-73-4668-01 19 40842091 40842091 T A C19orf47 Missense_Mutation p.M87L 0.33 tolerated(0.6) benign(0.147) TCGA-73-4668-01 19 43383729 43383729 C A PSG1 Missense_Mutation p.G2V 0.45 deleterious(0) benign(0.127) TCGA-73-4668-01 19 44047554 44047554 G A XRCC1 Missense_Mutation p.P631L 0.16 deleterious(0) probably_damaging(1) TCGA-73-4668-01 19 45315594 45315594 G T BCAM Missense_Mutation p.V127L 0.30 deleterious(0.01) possibly_damaging(0.81) TCGA-73-4668-01 19 49685943 49685943 A T TRPM4 Missense_Mutation p.M458L 0.24 deleterious(0.02) benign(0) TCGA-73-4668-01 19 50905995 50905995 A T POLD1 Nonsense_Mutation p.K323* 0.21 TCGA-73-4668-01 19 52133231 52133231 G T SIGLEC5 Silent p.L92L 0.11 TCGA-73-4668-01 19 52568499 52568499 C A ZNF841 Missense_Mutation p.C879F 0.23 deleterious(0) probably_damaging(1) TCGA-73-4668-01 19 52825656 52825656 C A ZNF480 Missense_Mutation p.H385N 0.20 tolerated(0.34) benign(0.183) TCGA-73-4668-01 19 53612523 53612523 G T ZNF415 Missense_Mutation p.L259I 0.18 deleterious(0.03) possibly_damaging(0.866) TCGA-73-4668-01 19 53885137 53885137 A T ZNF525 Silent p.G435G 0.29 TCGA-73-4668-01 19 53958199 53958199 G A ZNF761 RNA 0.10 TCGA-73-4668-01 19 54264393 54264393 G A MIR516A2 RNA 0.32 TCGA-73-4668-01 19 54304614 54304614 C A NLRP12 Nonsense_Mutation p.E875* 0.38 TCGA-73-4668-01 19 54629929 54629929 G T PRPF31 Silent p.L294L 0.31 TCGA-73-4668-01 19 55143453 55143453 C A LILRB1 Silent p.I142I 0.12 TCGA-73-4668-01 19 55143930 55143930 C A LILRB1 Missense_Mutation p.P226Q 0.14 deleterious(0) probably_damaging(0.969) TCGA-73-4668-01 19 55175787 55175787 C A LILRB4 Nonsense_Mutation p.S169* 0.25 TCGA-73-4668-01 19 55247646 55247646 T C KIR3DL3 3'UTR 0.19 TCGA-73-4668-01 19 55367325 55367325 G T KIR3DL2 Missense_Mutation p.V303L 0.12 tolerated(0.33) benign(0.002) TCGA-73-4668-01 19 56467428 56467428 C A NLRP8 Missense_Mutation p.N668K 0.19 tolerated(1) benign(0.003) TCGA-73-4668-01 19 56973748 56973748 C A ZNF667 5'UTR 0.16 TCGA-73-4668-01 19 57326484 57326484 C A PEG3 Missense_Mutation p.C1109F 0.14 deleterious(0.04) probably_damaging(0.996) TCGA-73-4668-01 19 7566259 7566259 A T C19orf45 Missense_Mutation p.Q184L 0.30 deleterious(0.05) possibly_damaging(0.49) TCGA-73-4668-01 19 8320582 8320582 A T CERS4 Missense_Mutation p.Q128L 0.33 tolerated(0.35) benign(0) TCGA-73-4668-01 19 9086026 9086026 C G MUC16 Missense_Mutation p.R1930T 0.44 unknown(0) TCGA-73-4668-01 1 10166582 10166582 A G UBE4B Silent p.L379L 0.10 TCGA-73-4668-01 1 107600116 107600116 G T PRMT6 Missense_Mutation p.R260L 0.41 tolerated(0.66) benign(0.007) TCGA-73-4668-01 1 107867132 107867132 C A NTNG1 Missense_Mutation p.Q159K 0.30 tolerated(0.65) benign(0.027) TCGA-73-4668-01 1 113098589 113098589 G T ST7L Silent p.R433R 0.10 TCGA-73-4668-01 1 117150665 117150665 T C IGSF3 Missense_Mutation p.Y374C 0.34 deleterious(0) probably_damaging(1) TCGA-73-4668-01 1 119427303 119427303 G A TBX15 3'UTR 0.10 TCGA-73-4668-01 1 120437320 120437320 C A ADAM30 Missense_Mutation p.C547F 0.33 deleterious(0) probably_damaging(1) TCGA-73-4668-01 1 150526056 150526056 C T ADAMTSL4 Missense_Mutation p.P197S 0.43 tolerated(0.72) benign(0.034) TCGA-73-4668-01 1 151237896 151237896 C T PSMD4 Silent p.A155A 0.48 TCGA-73-4668-01 1 152636844 152636844 G A LCE2D Missense_Mutation p.S88N 0.51 tolerated_low_confidence(0.33) unknown(0) TCGA-73-4668-01 1 153653755 153653755 A C NPR1 Missense_Mutation p.M341L 0.38 tolerated(1) benign(0.002) TCGA-73-4668-01 1 155838424 155838424 A T SYT11 Missense_Mutation p.S235C 0.27 deleterious(0) probably_damaging(0.999) TCGA-73-4668-01 1 155911749 155911749 G A RXFP4 Silent p.L83L 0.10 TCGA-73-4668-01 1 156384492 156384492 C T C1orf61 Missense_Mutation p.R42H 0.42 tolerated_low_confidence(0.23) benign(0.099) TCGA-73-4668-01 1 157772420 157772420 C A FCRL1 Missense_Mutation p.Q118H 0.26 deleterious(0.04) possibly_damaging(0.619) TCGA-73-4668-01 1 158654895 158654895 G A SPTA1 Intron 0.13 TCGA-73-4668-01 1 16255835 16255835 G A SPEN Missense_Mutation p.E1034K 0.06 benign(0.427) TCGA-73-4668-01 1 16259617 16259617 C - SPEN Frame_Shift_Del p.P2295Qfs*58 0.19 TCGA-73-4668-01 1 163044500 163044500 A G RGS4 3'UTR 0.33 TCGA-73-4668-01 1 167088687 167088687 G T DUSP27 Silent p.A213A 0.14 TCGA-73-4668-01 1 167096318 167096318 C A DUSP27 Missense_Mutation p.S650R 0.53 deleterious(0.01) benign(0.06) TCGA-73-4668-01 1 171178107 171178107 G T FMO2 3'UTR 0.24 TCGA-73-4668-01 1 17266539 17266539 G A CROCC Missense_Mutation p.A587T 0.62 possibly_damaging(0.502) TCGA-73-4668-01 1 175323529 175323529 G C TNR Missense_Mutation p.T1127R 0.10 deleterious(0) probably_damaging(0.999) TCGA-73-4668-01 1 176992651 176992651 G A ASTN1 Missense_Mutation p.P443S 0.57 deleterious(0) probably_damaging(0.999) TCGA-73-4668-01 1 179077769 179077769 C A ABL2 Missense_Mutation p.G878V 0.22 deleterious_low_confidence(0) benign(0.004) TCGA-73-4668-01 1 180243319 180243319 G A LHX4 Splice_Site p.X260_splice 0.27 TCGA-73-4668-01 1 180243460 180243460 C A LHX4 Missense_Mutation p.P307T 0.46 deleterious(0.04) probably_damaging(0.992) TCGA-73-4668-01 1 181620564 181620564 G C CACNA1E Missense_Mutation p.G348R 0.18 deleterious(0) probably_damaging(0.988) TCGA-73-4668-01 1 181702074 181702074 C T CACNA1E Missense_Mutation p.A951V 0.04 tolerated(0.22) benign(0) TCGA-73-4668-01 1 186083241 186083241 T A HMCN1 Silent p.A3754A 0.19 TCGA-73-4668-01 1 186083242 186083242 G A HMCN1 Missense_Mutation p.G3755R 0.19 possibly_damaging(0.538) TCGA-73-4668-01 1 192998665 192998665 T A UCHL5 Silent p.A123A 0.50 TCGA-73-4668-01 1 193028607 193028607 G T UCHL5 5'UTR 0.41 TCGA-73-4668-01 1 196645149 196645149 T C CFH Silent p.R127R 0.08 TCGA-73-4668-01 1 196646761 196646761 G C CFH Missense_Mutation p.D195H 0.21 deleterious(0.02) probably_damaging(0.965) TCGA-73-4668-01 1 196706113 196706113 G T CFH Missense_Mutation p.W858L 0.18 deleterious(0) probably_damaging(1) TCGA-73-4668-01 1 197643291 197643291 T C DENND1B Silent p.L45L 0.43 TCGA-73-4668-01 1 201195114 201195114 G T IGFN1 Missense_Mutation p.R3550L 0.22 benign(0.205) TCGA-73-4668-01 1 204228807 204228807 T A PLEKHA6 Missense_Mutation p.N196Y 0.26 deleterious(0.03) benign(0.128) TCGA-73-4668-01 1 205053177 205053177 T C TMEM81 Missense_Mutation p.H91R 0.29 deleterious(0) probably_damaging(0.981) TCGA-73-4668-01 1 207110897 207110897 C T PIGR Silent p.Q196Q 0.20 TCGA-73-4668-01 1 207135748 207135748 G T FCAMR Silent p.T154T 0.20 TCGA-73-4668-01 1 214820570 214820570 G A CENPF Missense_Mutation p.E2553K 0.21 benign(0) TCGA-73-4668-01 1 216824369 216824369 A G ESRRG Missense_Mutation p.S184P 0.24 deleterious(0.01) possibly_damaging(0.839) TCGA-73-4668-01 1 220364484 220364484 T A RAB3GAP2 Missense_Mutation p.R471S 0.24 deleterious(0) probably_damaging(0.97) TCGA-73-4668-01 1 220955126 220955126 C - MARC2 Frame_Shift_Del p.L298Cfs*28 0.22 TCGA-73-4668-01 1 222805592 222805592 G A MIA3 Silent p.L1085L 0.13 TCGA-73-4668-01 1 223178964 223178964 C A DISP1 Missense_Mutation p.P1409T 0.52 tolerated_low_confidence(0.34) benign(0.001) TCGA-73-4668-01 1 22964187 22964187 C A C1QA Nonsense_Mutation p.C26* 0.35 TCGA-73-4668-01 1 236881217 236881217 C A ACTN2 Silent p.I62I 0.45 TCGA-73-4668-01 1 237778129 237778129 C A RYR2 Missense_Mutation p.P1901T 0.26 benign(0.297) TCGA-73-4668-01 1 237837479 237837479 A G RYR2 Missense_Mutation p.I2892V 0.52 benign(0.241) TCGA-73-4668-01 1 237947112 237947112 G T RYR2 Nonsense_Mutation p.E4034* 0.16 TCGA-73-4668-01 1 243328855 243328855 C A CEP170 Missense_Mutation p.A803S 0.19 tolerated(0.17) benign(0.004) TCGA-73-4668-01 1 247004094 247004094 A G AHCTF1 3'UTR 0.04 TCGA-73-4668-01 1 247264571 247264571 C A ZNF669 Missense_Mutation p.G167V 0.24 deleterious(0) benign(0.036) TCGA-73-4668-01 1 247654579 247654579 C A OR2W5 RNA 0.50 TCGA-73-4668-01 1 248085161 248085161 C G OR2T8 Missense_Mutation p.P281R 0.37 deleterious(0) probably_damaging(1) TCGA-73-4668-01 1 249211917 249211917 G T PGBD2 Missense_Mutation p.R378S 0.41 deleterious(0) possibly_damaging(0.903) TCGA-73-4668-01 1 28138717 28138717 G T STX12 Missense_Mutation p.A172S 0.33 tolerated(0.22) benign(0.007) TCGA-73-4668-01 1 29638171 29638171 A G PTPRU Missense_Mutation p.Y1001C 0.19 deleterious(0) probably_damaging(1) TCGA-73-4668-01 1 33958788 33958788 A C ZSCAN20 Silent p.A482A 0.44 TCGA-73-4668-01 1 34087803 34087803 T A CSMD2 Missense_Mutation p.S1891C 0.44 deleterious(0) probably_damaging(0.996) TCGA-73-4668-01 1 37282790 37282790 C A GRIK3 Silent p.T654T 0.17 TCGA-73-4668-01 1 3774281 3774281 G T DFFB Missense_Mutation p.Q38H 0.77 deleterious(0) benign(0.411) TCGA-73-4668-01 1 41222991 41222991 C G NFYC Intron 0.36 TCGA-73-4668-01 1 43783064 43783064 C A TIE1 Silent p.A868A 0.47 TCGA-73-4668-01 1 44477388 44477388 G T SLC6A9 Missense_Mutation p.L32I 0.14 tolerated_low_confidence(0.95) benign(0) TCGA-73-4668-01 1 45088460 45088460 G A RNF220 Splice_Site p.X268_splice 0.19 TCGA-73-4668-01 1 45407203 45407203 G A EIF2B3 Silent p.P143P 0.22 TCGA-73-4668-01 1 48764476 48764476 C A SPATA6 Missense_Mutation p.R459L 0.08 deleterious(0) possibly_damaging(0.907) TCGA-73-4668-01 1 57431682 57431682 G A C8B 5'UTR 0.31 TCGA-73-4668-01 1 6527485 6527485 C A PLEKHG5 3'Flank 0.14 TCGA-73-4668-01 1 66102408 66102408 G T LEPR Nonsense_Mutation p.E1070* 0.36 TCGA-73-4668-01 1 79403492 79403492 C A ELTD1 Missense_Mutation p.A254S 0.35 tolerated(0.42) possibly_damaging(0.803) TCGA-73-4668-01 1 86252065 86252065 G T COL24A1 Missense_Mutation p.P1344Q 0.35 deleterious(0.03) benign(0.063) TCGA-73-4668-01 1 887454 887454 C G NOC2L Silent p.L419L 0.29 TCGA-73-4668-01 1 99772504 99772504 C A LPPR4 Missense_Mutation p.P744T 0.36 tolerated(0.2) probably_damaging(0.94) TCGA-73-4668-01 1 99772505 99772505 C A LPPR4 Missense_Mutation p.P744H 0.35 deleterious(0.02) probably_damaging(0.969) TCGA-73-4668-01 20 20144868 20144868 G T C20orf26 Missense_Mutation p.A401S 0.32 tolerated(0.39) benign(0.007) TCGA-73-4668-01 20 20484116 20484116 C T RALGAPA2 Missense_Mutation p.G1696D 0.31 deleterious(0) probably_damaging(1) TCGA-73-4668-01 20 21494266 21494266 G A NKX2-2 Silent p.D14D 0.20 TCGA-73-4668-01 20 25405910 25405910 G T GINS1 Nonsense_Mutation p.E132* 0.24 TCGA-73-4668-01 20 2775946 2775946 C G CPXM1 Missense_Mutation p.A613P 0.49 deleterious(0.05) probably_damaging(0.992) TCGA-73-4668-01 20 31825969 31825969 G T BPIFA1 Missense_Mutation p.G90V 0.39 deleterious(0) probably_damaging(0.991) TCGA-73-4668-01 20 33028121 33028121 C T ITCH Missense_Mutation p.P322S 0.27 tolerated(0.25) benign(0) TCGA-73-4668-01 20 33874942 33874942 G T FAM83C Missense_Mutation p.S547Y 0.39 deleterious_low_confidence(0) benign(0.316) TCGA-73-4668-01 20 34295112 34295112 C A RBM39 Missense_Mutation p.A413S 0.38 tolerated(0.45) benign(0.08) TCGA-73-4668-01 20 34782249 34782249 G T EPB41L1 Missense_Mutation p.E472D 0.34 tolerated(0.19) benign(0.009) TCGA-73-4668-01 20 4228885 4228885 G T ADRA1D Silent p.P240P 0.40 TCGA-73-4668-01 20 44815562 44815562 G T CDH22 Missense_Mutation p.A483E 0.33 deleterious(0.05) benign(0.007) TCGA-73-4668-01 20 44845477 44845478 - T CDH22 Frame_Shift_Ins p.R276Tfs*27 0.41 TCGA-73-4668-01 20 45920619 45920619 T A ZMYND8 Missense_Mutation p.Q194L 0.10 tolerated(0.16) benign(0.078) TCGA-73-4668-01 20 47990041 47990041 G C KCNB1 Missense_Mutation p.P686A 0.11 tolerated_low_confidence(0.09) benign(0.01) TCGA-73-4668-01 20 5283203 5283203 G T PROKR2 Missense_Mutation p.P213H 0.36 deleterious(0) possibly_damaging(0.695) TCGA-73-4668-01 20 54824013 54824013 C A MC3R Silent p.V38V 0.35 TCGA-73-4668-01 20 57244382 57244382 G T STX16 Silent p.L143L 0.39 TCGA-73-4668-01 20 57430234 57430234 G T GNAS Missense_Mutation p.K638N 0.16 deleterious_low_confidence(0) possibly_damaging(0.76) TCGA-73-4668-01 20 57766376 57766376 G T ZNF831 Missense_Mutation p.G101V 0.50 deleterious(0) probably_damaging(0.999) TCGA-73-4668-01 20 57899558 57899558 T C EDN3 3'UTR 0.30 TCGA-73-4668-01 20 60348202 60348202 G T CDH4 Missense_Mutation p.E180D 0.42 deleterious(0) probably_damaging(1) TCGA-73-4668-01 20 60892742 60892742 C A LAMA5 Silent p.L2444L 0.32 TCGA-73-4668-01 20 62174827 62174827 G T SRMS Missense_Mutation p.A162D 0.27 tolerated(1) possibly_damaging(0.624) TCGA-73-4668-01 20 9498797 9498797 C G LAMP5 Missense_Mutation p.Q196E 0.36 tolerated(0.12) possibly_damaging(0.758) TCGA-73-4668-01 21 27840721 27840721 G T CYYR1 3'UTR 0.28 TCGA-73-4668-01 21 30698503 30698503 G T BACH1 Nonsense_Mutation p.E120* 0.51 TCGA-73-4668-01 22 40066860 40066860 C A CACNA1I Silent p.I1480I 0.48 TCGA-73-4668-01 22 42191478 42191478 G A MEI1 Missense_Mutation p.V1200M 0.59 deleterious(0.02) benign(0.351) TCGA-73-4668-01 2 103095688 103095688 A G SLC9A4 Missense_Mutation p.E216G 0.22 deleterious(0) probably_damaging(0.932) TCGA-73-4668-01 2 105924698 105924698 C A TGFBRAP1 Missense_Mutation p.D21Y 0.27 deleterious(0) possibly_damaging(0.896) TCGA-73-4668-01 2 108488462 108488462 C A RGPD4 Nonsense_Mutation p.Y1334* 0.35 TCGA-73-4668-01 2 128261073 128261073 C - IWS1 Frame_Shift_Del p.K434Rfs*3 0.33 TCGA-73-4668-01 2 12880965 12880965 G T TRIB2 3'UTR 0.28 TCGA-73-4668-01 2 136569909 136569909 G T LCT Missense_Mutation p.F775L 0.20 tolerated(0.35) benign(0.009) TCGA-73-4668-01 2 139316626 139316626 G C SPOPL Missense_Mutation p.G172A 0.13 deleterious(0.02) possibly_damaging(0.901) TCGA-73-4668-01 2 139429232 139429232 A G NXPH2 Missense_Mutation p.F19L 0.25 tolerated_low_confidence(0.52) benign(0) TCGA-73-4668-01 2 141072595 141072595 G T LRP1B Missense_Mutation p.H4238Q 0.24 benign(0.227) TCGA-73-4668-01 2 141641433 141641433 T A LRP1B Silent p.A1374A 0.40 TCGA-73-4668-01 2 141747203 141747203 G T LRP1B Missense_Mutation p.Q890K 0.37 possibly_damaging(0.573) TCGA-73-4668-01 2 141819767 141819767 C A LRP1B Missense_Mutation p.R363S 0.34 benign(0.227) TCGA-73-4668-01 2 152320326 152320326 G A RIF1 Missense_Mutation p.S1431N 0.15 tolerated(0.06) benign(0.111) TCGA-73-4668-01 2 158958579 158958579 G A UPP2 Missense_Mutation p.A59T 0.34 tolerated_low_confidence(0.12) benign(0.022) TCGA-73-4668-01 2 162891790 162891790 C T DPP4 Missense_Mutation p.G220S 0.41 tolerated(0.12) benign(0.123) TCGA-73-4668-01 2 165947177 165947177 G C SCN3A Missense_Mutation p.P1829R 0.29 deleterious(0) probably_damaging(1) TCGA-73-4668-01 2 169622131 169622131 G T CERS6 Missense_Mutation p.W292L 0.24 tolerated(0.17) possibly_damaging(0.543) TCGA-73-4668-01 2 179395553 179395553 G T TTN Silent p.A35263A 0.42 TCGA-73-4668-01 2 179485223 179485223 G T TTN Missense_Mutation p.P15342H 0.17 TCGA-73-4668-01 2 179545824 179545824 T C TTN Missense_Mutation p.T11108A 0.23 TCGA-73-4668-01 2 17955603 17955603 G T GEN1 Missense_Mutation p.L379F 0.27 deleterious(0) probably_damaging(0.963) TCGA-73-4668-01 2 179565846 179565846 C A TTN Splice_Site p.X10228_splice 0.23 TCGA-73-4668-01 2 179605997 179605997 T C TTN Missense_Mutation p.H3988R 0.20 TCGA-73-4668-01 2 179650642 179650642 A T TTN Missense_Mutation p.V768E 0.37 TCGA-73-4668-01 2 183601114 183601114 G T DNAJC10 Splice_Site p.X329_splice 0.24 TCGA-73-4668-01 2 183730841 183730841 C A FRZB Missense_Mutation p.C147F 0.29 deleterious(0) probably_damaging(0.999) TCGA-73-4668-01 2 185801123 185801123 C A ZNF804A Missense_Mutation p.Q334K 0.30 tolerated(0.18) benign(0.173) TCGA-73-4668-01 2 198327273 198327273 C T COQ10B Nonsense_Mutation p.Q89* 0.34 TCGA-73-4668-01 2 202025625 202025625 C T CFLAR Silent p.L422L 0.38 TCGA-73-4668-01 2 206921452 206921452 G T INO80D Missense_Mutation p.T145N 0.27 tolerated(0.17) benign(0.192) TCGA-73-4668-01 2 207814375 207814375 A T CPO Nonsense_Mutation p.K35* 0.40 TCGA-73-4668-01 2 216197222 216197222 G T ATIC Missense_Mutation p.S269I 0.47 deleterious(0) probably_damaging(1) TCGA-73-4668-01 2 227660836 227660836 C A IRS1 Silent p.R873R 0.38 TCGA-73-4668-01 2 227920787 227920787 C A COL4A4 Missense_Mutation p.G864W 0.31 unknown(0) TCGA-73-4668-01 2 231176278 231176278 C A SP140 Missense_Mutation p.L825I 0.24 deleterious(0) probably_damaging(0.999) TCGA-73-4668-01 2 236949415 236949415 C G AGAP1 Missense_Mutation p.S607R 0.39 deleterious(0.03) benign(0.01) TCGA-73-4668-01 2 242434976 242434976 G A STK25 3'UTR 0.14 TCGA-73-4668-01 2 44104698 44104698 A G ABCG8 Splice_Site p.X586_splice 0.30 TCGA-73-4668-01 2 45800477 45800477 G A SRBD1 Nonsense_Mutation p.Q392* 0.25 TCGA-73-4668-01 2 48808908 48808908 G T STON1-GTF2A1L Missense_Mutation p.G379V 0.28 deleterious(0) probably_damaging(1) TCGA-73-4668-01 2 50724468 50724468 C T NRXN1 Intron 0.24 TCGA-73-4668-01 2 50733693 50733693 G T NRXN1 Missense_Mutation p.R853S 0.38 deleterious(0.03) possibly_damaging(0.758) TCGA-73-4668-01 2 69298889 69298889 A T ANTXR1 Missense_Mutation p.S128C 0.28 deleterious(0) probably_damaging(0.931) TCGA-73-4668-01 2 72361919 72361919 C T CYP26B1 Missense_Mutation p.G278R 0.29 deleterious(0) probably_damaging(0.977) TCGA-73-4668-01 2 74320686 74320686 C T TET3 Missense_Mutation p.R919C 0.30 deleterious(0) probably_damaging(0.984) TCGA-73-4668-01 2 74709006 74709006 T A CCDC142 Missense_Mutation p.N320I 0.32 tolerated(0.37) benign(0.012) TCGA-73-4668-01 2 79313531 79313531 C A REG1B Missense_Mutation p.D95Y 0.34 tolerated(1) probably_damaging(0.992) TCGA-73-4668-01 2 87201309 87201309 C T RGPD1 Missense_Mutation p.H455Y 0.16 deleterious(0.02) benign(0.437) TCGA-73-4668-01 2 88472749 88472749 G T THNSL2 Missense_Mutation p.G27V 0.25 deleterious(0) probably_damaging(0.988) TCGA-73-4668-01 2 91843461 91843461 C A AC027612.6 RNA 0.20 TCGA-73-4668-01 2 96853011 96853011 C A STARD7 Missense_Mutation p.S291I 0.22 tolerated(0.21) probably_damaging(0.954) TCGA-73-4668-01 2 97784159 97784159 G T ANKRD36 Nonsense_Mutation p.G131* 0.11 TCGA-73-4668-01 2 99976702 99976702 C T EIF5B Silent p.T13T 0.16 TCGA-73-4668-01 3 102181147 102181147 T A ZPLD1 Nonsense_Mutation p.L218* 0.27 TCGA-73-4668-01 3 108776208 108776208 T A MORC1 Missense_Mutation p.Q386L 0.38 deleterious(0) probably_damaging(0.991) TCGA-73-4668-01 3 112251469 112251469 T C ATG3 3'UTR 0.50 TCGA-73-4668-01 3 119133764 119133764 T A ARHGAP31 Silent p.I996I 0.25 TCGA-73-4668-01 3 121208732 121208732 C A POLQ Missense_Mutation p.V1016F 0.28 deleterious_low_confidence(0.01) benign(0.405) TCGA-73-4668-01 3 122821599 122821599 G T PDIA5 Missense_Mutation p.D115Y 0.22 deleterious(0) probably_damaging(1) TCGA-73-4668-01 3 124952110 124952110 T A ZNF148 Missense_Mutation p.Y487F 0.23 tolerated(0.2) probably_damaging(0.985) TCGA-73-4668-01 3 130884364 130884364 G T NEK11 Splice_Site p.X392_splice 0.19 TCGA-73-4668-01 3 134920490 134920490 C A EPHB1 Missense_Mutation p.L769I 0.09 tolerated(0.06) possibly_damaging(0.907) TCGA-73-4668-01 3 138478125 138478125 C G PIK3CB Missense_Mutation p.D21H 0.35 tolerated(0.15) benign(0.001) TCGA-73-4668-01 3 140397351 140397351 C T TRIM42 Missense_Mutation p.R94C 0.41 deleterious(0) possibly_damaging(0.874) TCGA-73-4668-01 3 141904809 141904809 C A GK5 Nonsense_Mutation p.E260* 0.20 TCGA-73-4668-01 3 151012380 151012380 C A GPR87 Silent p.V218V 0.38 TCGA-73-4668-01 3 151056021 151056021 C A P2RY12 Missense_Mutation p.V205F 0.21 deleterious(0) possibly_damaging(0.701) TCGA-73-4668-01 3 158317887 158317887 C T MLF1 Missense_Mutation p.H196Y 0.61 deleterious(0) probably_damaging(1) TCGA-73-4668-01 3 164724627 164724627 C A SI Missense_Mutation p.W1461C 0.15 deleterious(0) probably_damaging(0.999) TCGA-73-4668-01 3 164755795 164755795 C A SI Missense_Mutation p.W773C 0.43 tolerated(0.08) possibly_damaging(0.907) TCGA-73-4668-01 3 164783080 164783080 G T SI Missense_Mutation p.P259Q 0.20 deleterious(0) probably_damaging(0.909) TCGA-73-4668-01 3 164907248 164907248 G T SLITRK3 Missense_Mutation p.N457K 0.40 deleterious(0.03) benign(0.068) TCGA-73-4668-01 3 182755060 182755060 C G MCCC1 Missense_Mutation p.G514R 0.45 tolerated(0.22) possibly_damaging(0.774) TCGA-73-4668-01 3 190345227 190345227 C T IL1RAP Silent p.T297T 0.13 TCGA-73-4668-01 3 23960910 23960910 A G RPL15 Missense_Mutation p.H178R 0.55 tolerated(0.15) benign(0.075) TCGA-73-4668-01 3 42728057 42728057 T A KLHL40 Missense_Mutation p.L316Q 0.48 tolerated(0.46) benign(0.105) TCGA-73-4668-01 3 51284221 51284221 A T DOCK3 Missense_Mutation p.I723F 0.52 tolerated(0.13) probably_damaging(0.959) TCGA-73-4668-01 3 55107852 55107852 G A CACNA2D3 Missense_Mutation p.R1050K 0.55 tolerated(0.49) benign(0.003) TCGA-73-4668-01 3 9594086 9594086 T C LHFPL4 Missense_Mutation p.K93R 0.46 tolerated(0.2) benign(0.189) TCGA-73-4668-01 3 96706283 96706283 C - EPHA6 Frame_Shift_Del p.R188Vfs*11 0.19 TCGA-73-4668-01 3 98072854 98072854 C T OR5K4 Missense_Mutation p.R53C 0.17 deleterious(0.05) benign(0.015) TCGA-73-4668-01 3 99891162 99891162 C T CMSS1 Silent p.V194V 0.42 TCGA-73-4668-01 4 100126133 100126133 A T ADH6 Missense_Mutation p.L351Q 0.34 deleterious(0) probably_damaging(0.953) TCGA-73-4668-01 4 10022985 10022985 G A SLC2A9 Silent p.H23H 0.12 TCGA-73-4668-01 4 104510895 104510895 A T TACR3 Missense_Mutation p.S448T 0.13 tolerated(0.08) probably_damaging(0.98) TCGA-73-4668-01 4 113541292 113541292 C A C4orf21 Missense_Mutation p.V73F 0.29 deleterious(0.01) benign(0.347) TCGA-73-4668-01 4 114254361 114254361 G T ANK2 Nonsense_Mutation p.E1126* 0.34 TCGA-73-4668-01 4 114257162 114257162 G C ANK2 Missense_Mutation p.Q1180H 0.05 probably_damaging(0.999) TCGA-73-4668-01 4 138452894 138452894 G A PCDH18 Missense_Mutation p.H117Y 0.09 tolerated(0.81) benign(0.002) TCGA-73-4668-01 4 141555141 141555141 C A TBC1D9 Missense_Mutation p.D903Y 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-73-4668-01 4 144801572 144801572 T A GYPE Missense_Mutation p.Q43L 0.28 deleterious_low_confidence(0.01) benign(0.145) TCGA-73-4668-01 4 152043243 152043243 C A SH3D19 Nonstop_Mutation p.*791Yext*31 0.40 TCGA-73-4668-01 4 156698768 156698768 G T GUCY1B3 Missense_Mutation p.G91C 0.21 deleterious(0) probably_damaging(0.999) TCGA-73-4668-01 4 156715006 156715006 A T GUCY1B3 Splice_Site p.X166_splice 0.20 TCGA-73-4668-01 4 159538291 159538291 T C RXFP1 Missense_Mutation p.M230T 0.17 tolerated(0.17) benign(0.038) TCGA-73-4668-01 4 162307510 162307510 A T FSTL5 Missense_Mutation p.Y645N 0.22 deleterious(0.05) benign(0.022) TCGA-73-4668-01 4 164272217 164272217 G T NPY5R Missense_Mutation p.K264N 0.15 tolerated(0.19) benign(0.003) TCGA-73-4668-01 4 164393633 164393634 - C TKTL2 Frame_Shift_Ins p.S419Ffs*36 0.22 TCGA-73-4668-01 4 176561919 176561919 C A GPM6A Missense_Mutation p.M201I 0.19 tolerated(1) benign(0.004) TCGA-73-4668-01 4 183675777 183675777 T A TENM3 Silent p.T1419T 0.24 TCGA-73-4668-01 4 188924650 188924650 C G ZFP42 Nonsense_Mutation p.S230* 0.37 TCGA-73-4668-01 4 44177089 44177089 T A KCTD8 Silent p.T380T 0.52 TCGA-73-4668-01 4 47850138 47850138 T A NFXL1 3'UTR 0.60 TCGA-73-4668-01 4 52740465 52740465 C G DCUN1D4 Missense_Mutation p.D55E 0.04 tolerated_low_confidence(0.26) benign(0.05) TCGA-73-4668-01 4 55979578 55979578 C A KDR Missense_Mutation p.S290I 0.19 deleterious(0) possibly_damaging(0.892) TCGA-73-4668-01 4 57857037 57857037 G A POLR2B Silent p.Q72Q 0.20 TCGA-73-4668-01 4 69417590 69417590 C A UGT2B17 Missense_Mutation p.G349C 0.52 deleterious(0) probably_damaging(0.999) TCGA-73-4668-01 4 69796403 69796403 C A UGT2A3 Missense_Mutation p.V389L 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-73-4668-01 4 70156399 70156399 C A UGT2B28 Missense_Mutation p.P394T 0.45 deleterious(0) probably_damaging(1) TCGA-73-4668-01 4 70156400 70156400 C A UGT2B28 Missense_Mutation p.P394Q 0.46 deleterious(0) probably_damaging(1) TCGA-73-4668-01 4 70346380 70346380 C A UGT2B4 Missense_Mutation p.R520I 0.43 deleterious(0.05) possibly_damaging(0.515) TCGA-73-4668-01 4 71201991 71201991 G T CABS1 3'UTR 0.39 TCGA-73-4668-01 4 73205255 73205255 C A ADAMTS3 Missense_Mutation p.G273C 0.04 deleterious(0) probably_damaging(1) TCGA-73-4668-01 4 75246782 75246782 G T EREG Missense_Mutation p.S69I 0.15 tolerated(0.14) benign(0.123) TCGA-73-4668-01 4 76797493 76797493 C T PPEF2 Missense_Mutation p.A423T 0.25 tolerated(0.54) benign(0.004) TCGA-73-4668-01 4 7728561 7728561 G T SORCS2 Missense_Mutation p.V934L 0.60 tolerated(0.65) benign(0.222) TCGA-73-4668-01 4 77816557 77816557 C A SOWAHB 3'UTR 0.26 TCGA-73-4668-01 4 85416934 85416934 C A NKX6-1 Missense_Mutation p.G245V 0.38 deleterious(0) unknown(0) TCGA-73-4668-01 4 90856970 90856970 A T MMRN1 Missense_Mutation p.L713F 0.20 tolerated(0.89) benign(0.012) TCGA-73-4668-01 4 94137928 94137928 T C GRID2 Missense_Mutation p.S277P 0.37 deleterious(0.03) probably_damaging(0.917) TCGA-73-4668-01 4 96761804 96761804 A G PDHA2 Missense_Mutation p.Q168R 0.18 deleterious(0) probably_damaging(0.996) TCGA-73-4668-01 4 99339942 99339942 G T RAP1GDS1 Missense_Mutation p.V393F 0.21 deleterious(0) probably_damaging(0.965) TCGA-73-4668-01 5 11023083 11023083 C A CTNND2 Missense_Mutation p.A933S 0.20 deleterious(0.01) benign(0.421) TCGA-73-4668-01 5 11385018 11385018 G T CTNND2 Missense_Mutation p.S312R 0.10 tolerated(0.58) benign(0.012) TCGA-73-4668-01 5 115831129 115831129 G T SEMA6A Missense_Mutation p.P142T 0.35 deleterious(0) probably_damaging(1) TCGA-73-4668-01 5 118485771 118485771 G T DMXL1 Missense_Mutation p.D1417Y 0.19 deleterious(0) probably_damaging(0.994) TCGA-73-4668-01 5 1246128 1246128 G C SLC6A18 Missense_Mutation p.D608H 0.24 tolerated(0.17) unknown(0) TCGA-73-4668-01 5 135583167 135583167 C A TRPC7 Silent p.A612A 0.14 TCGA-73-4668-01 5 140237760 140237760 G C PCDHA10 Silent p.L709L 0.51 TCGA-73-4668-01 5 140250004 140250004 G C PCDHA11 Missense_Mutation p.R439T 0.49 tolerated_low_confidence(0.17) benign(0) TCGA-73-4668-01 5 140250295 140250295 C G PCDHA11 Missense_Mutation p.A536G 0.48 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-73-4668-01 5 140553859 140553859 C A PCDHB7 Silent p.G481G 0.50 TCGA-73-4668-01 5 140711869 140711869 C A PCDHGA1 Missense_Mutation p.P540T 0.45 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-73-4668-01 5 140725651 140725651 C A PCDHGA3 Missense_Mutation p.P684H 0.42 deleterious_low_confidence(0.01) benign(0.041) TCGA-73-4668-01 5 140736053 140736053 C A PCDHGA4 Missense_Mutation p.T429N 0.47 tolerated_low_confidence(0.32) benign(0.096) TCGA-73-4668-01 5 149245776 149245776 A T PDE6A Missense_Mutation p.L772H 0.25 deleterious(0) probably_damaging(0.966) TCGA-73-4668-01 5 161117334 161117334 G T GABRA6 Missense_Mutation p.E267D 0.04 tolerated(0.35) probably_damaging(0.996) TCGA-73-4668-01 5 16681446 16681446 G A MYO10 Silent p.P1452P 0.22 TCGA-73-4668-01 5 167553757 167553757 A T TENM2 Splice_Site p.X737_splice 0.38 TCGA-73-4668-01 5 169509880 169509880 C A DOCK2 3'UTR 0.15 TCGA-73-4668-01 5 171639032 171639032 G T UBTD2 Silent p.R169R 0.52 TCGA-73-4668-01 5 171639033 171639033 C G UBTD2 Missense_Mutation p.R169P 0.53 tolerated(0.21) probably_damaging(0.998) TCGA-73-4668-01 5 19747198 19747198 G A CDH18 Missense_Mutation p.L126F 0.07 deleterious(0) probably_damaging(0.998) TCGA-73-4668-01 5 21751826 21751826 T A CDH12 3'UTR 0.24 TCGA-73-4668-01 5 33683200 33683200 C A ADAMTS12 Missense_Mutation p.G280W 0.27 deleterious(0) probably_damaging(1) TCGA-73-4668-01 5 33951594 33951594 T A SLC45A2 Intron 0.25 TCGA-73-4668-01 5 36271399 36271399 C G RANBP3L Missense_Mutation p.A36P 0.46 deleterious(0) probably_damaging(1) TCGA-73-4668-01 5 45303943 45303943 T A HCN1 Splice_Site p.X460_splice 0.25 TCGA-73-4668-01 5 5191879 5191879 C A ADAMTS16 Missense_Mutation p.T430N 0.11 deleterious(0) probably_damaging(1) TCGA-73-4668-01 5 5191880 5191880 C A ADAMTS16 Silent p.T430T 0.11 TCGA-73-4668-01 5 6750603 6750604 - T PAPD7 Frame_Shift_Ins p.G367Wfs*3 0.23 TCGA-73-4668-01 5 74096754 74096754 C A FAM169A Missense_Mutation p.G352C 0.51 deleterious(0.01) probably_damaging(0.947) TCGA-73-4668-01 5 75996966 75996966 C A IQGAP2 Missense_Mutation p.P1478Q 0.50 tolerated(0.31) benign(0.014) TCGA-73-4668-01 5 7831995 7831995 C A C5orf49 Nonsense_Mutation p.E138* 0.21 TCGA-73-4668-01 5 80408616 80408616 G A RASGRF2 Missense_Mutation p.A676T 0.18 tolerated(0.66) benign(0.008) TCGA-73-4668-01 5 90670930 90670930 C T ARRDC3 Missense_Mutation p.A227T 0.52 deleterious(0.04) probably_damaging(0.952) TCGA-73-4668-01 5 94253649 94253649 C T MCTP1 Silent p.L434L 0.32 TCGA-73-4668-01 6 108214748 108214748 G C SEC63 Missense_Mutation p.P538A 0.18 tolerated(0.68) benign(0.002) TCGA-73-4668-01 6 116879069 116879069 A T FAM26D Missense_Mutation p.T71S 0.23 tolerated(0.81) benign(0.011) TCGA-73-4668-01 6 117127557 117127557 G T GPRC6A Missense_Mutation p.N437K 0.16 tolerated(0.27) benign(0.005) TCGA-73-4668-01 6 123673692 123673692 A T TRDN Missense_Mutation p.V454E 0.15 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-73-4668-01 6 132891808 132891808 T A TAAR6 Nonsense_Mutation p.C116* 0.19 TCGA-73-4668-01 6 135778795 135778795 C A AHI1 Missense_Mutation p.D330Y 0.17 deleterious(0) probably_damaging(0.959) TCGA-73-4668-01 6 136599805 136599805 C A BCLAF1 Missense_Mutation p.G72W 0.15 deleterious_low_confidence(0.01) unknown(0) TCGA-73-4668-01 6 151646946 151646946 G A AKAP12 Intron 0.16 TCGA-73-4668-01 6 152792833 152792833 G T SYNE1 Missense_Mutation p.R511S 0.36 probably_damaging(0.946) TCGA-73-4668-01 6 155532427 155532427 G C TIAM2 Missense_Mutation p.E1052Q 0.28 tolerated(0.09) benign(0.323) TCGA-73-4668-01 6 160913901 160913901 G T LPAL2 RNA 0.22 TCGA-73-4668-01 6 165715454 165715454 G T C6orf118 Silent p.V119V 0.44 TCGA-73-4668-01 6 165801861 165801861 G T PDE10A Missense_Mutation p.H580N 0.48 tolerated(0.16) possibly_damaging(0.889) TCGA-73-4668-01 6 167794623 167794623 C A TCP10 Nonsense_Mutation p.E89* 0.31 TCGA-73-4668-01 6 26234700 26234700 C A HIST1H1D Missense_Mutation p.K154N 0.43 deleterious(0.01) unknown(0) TCGA-73-4668-01 6 27107385 27107385 G T HIST1H4I Missense_Mutation p.G100C 0.35 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-73-4668-01 6 27775345 27775345 C A HIST1H2BL Nonsense_Mutation p.E114* 0.35 TCGA-73-4668-01 6 31696006 31696006 C A DDAH2 Missense_Mutation p.G179W 0.47 deleterious(0) probably_damaging(0.999) TCGA-73-4668-01 6 37336320 37336320 C T RNF8 Missense_Mutation p.H101Y 0.03 tolerated(0.08) possibly_damaging(0.703) TCGA-73-4668-01 6 38881720 38881720 G A DNAH8 Missense_Mutation p.A3102T 0.20 probably_damaging(0.984) TCGA-73-4668-01 6 39545914 39545914 C - KIF6 Frame_Shift_Del p.E367Kfs*5 0.26 TCGA-73-4668-01 6 40400206 40400206 G T LRFN2 Missense_Mutation p.P216H 0.17 deleterious(0) probably_damaging(1) TCGA-73-4668-01 6 43011260 43011260 C A CUL7 Missense_Mutation p.R1178L 0.30 deleterious(0) probably_damaging(1) TCGA-73-4668-01 6 43152288 43152288 A T CUL9 Missense_Mutation p.L80F 0.24 deleterious(0) probably_damaging(0.922) TCGA-73-4668-01 6 43274041 43274041 C A CRIP3 Silent p.V137V 0.28 TCGA-73-4668-01 6 49753803 49753803 G A PGK2 Silent p.G366G 0.24 TCGA-73-4668-01 6 50805754 50805754 C T TFAP2B Silent p.P296P 0.44 TCGA-73-4668-01 6 5109697 5109697 T A LYRM4 Missense_Mutation p.T39S 0.26 deleterious_low_confidence(0) possibly_damaging(0.631) TCGA-73-4668-01 6 51897943 51897943 C A PKHD1 Silent p.V1083V 0.45 TCGA-73-4668-01 6 53883743 53883743 A T MLIP 5'UTR 0.38 TCGA-73-4668-01 6 55128554 55128554 C T HCRTR2 Silent p.Y232Y 0.43 TCGA-73-4668-01 6 56425222 56425222 C T DST Splice_Site p.X2148_splice 0.40 TCGA-73-4668-01 6 66053950 66053950 G A EYS Missense_Mutation p.P527L 0.17 tolerated(0.31) benign(0) TCGA-73-4668-01 6 69666701 69666701 G C BAI3 Missense_Mutation p.A509P 0.07 tolerated(0.07) probably_damaging(0.996) TCGA-73-4668-01 6 84765081 84765081 C A MRAP2 Nonsense_Mutation p.S15* 0.19 TCGA-73-4668-01 6 86324674 86324674 C A SYNCRIP Missense_Mutation p.G558C 0.21 deleterious(0) unknown(0) TCGA-73-4668-01 6 91257068 91257068 C A MAP3K7 Silent p.G373G 0.27 TCGA-73-4668-01 6 91257069 91257069 C A MAP3K7 Missense_Mutation p.G373V 0.27 tolerated(0.35) benign(0.04) TCGA-73-4668-01 6 9897114 9897114 G C OFCC1 Intron 0.39 TCGA-73-4668-01 7 100349612 100349612 C A ZAN Silent p.I628I 0.19 TCGA-73-4668-01 7 102915919 102915919 C A DPY19L2P2 RNA 0.29 TCGA-73-4668-01 7 106509590 106509590 C A PIK3CG Silent p.A528A 0.36 TCGA-73-4668-01 7 107216865 107216865 A T DUS4L Silent p.T178T 0.49 TCGA-73-4668-01 7 107533693 107533693 G C DLD Missense_Mutation p.V30L 0.22 tolerated(0.86) benign(0.001) TCGA-73-4668-01 7 107696157 107696157 A T LAMB4 Silent p.S1225S 0.16 TCGA-73-4668-01 7 107718762 107718762 C G LAMB4 Splice_Site p.X630_splice 0.37 TCGA-73-4668-01 7 107880457 107880457 G C NRCAM Missense_Mutation p.P18A 0.31 tolerated(1) benign(0.001) TCGA-73-4668-01 7 108205159 108205159 G C THAP5 Missense_Mutation p.Q222E 0.48 tolerated(0.36) benign(0.079) TCGA-73-4668-01 7 120767204 120767204 G T CPED1 Nonsense_Mutation p.E399* 0.20 TCGA-73-4668-01 7 121942957 121942957 C - FEZF1 Frame_Shift_Del p.G322Afs*10 0.28 TCGA-73-4668-01 7 121985699 121985699 A G CADPS2 Missense_Mutation p.F1181L 0.17 deleterious(0.01) probably_damaging(0.935) TCGA-73-4668-01 7 130370058 130370058 C A TSGA13 5'UTR 0.33 TCGA-73-4668-01 7 131071982 131071982 G C MKLN1 Missense_Mutation p.G91A 0.23 deleterious(0) probably_damaging(0.998) TCGA-73-4668-01 7 131195709 131195709 G A PODXL Missense_Mutation p.T195M 0.07 tolerated(0.27) benign(0.002) TCGA-73-4668-01 7 131815270 131815270 G T PLXNA4 Missense_Mutation p.Q1885K 0.21 deleterious(0) probably_damaging(0.977) TCGA-73-4668-01 7 134925270 134925270 G A STRA8 Splice_Site p.X21_splice 0.46 TCGA-73-4668-01 7 138749670 138749670 C - ZC3HAV1 Frame_Shift_Del p.V650Cfs*12 0.33 TCGA-73-4668-01 7 139107013 139107013 G A LUC7L2 Missense_Mutation p.R435Q 0.29 tolerated_low_confidence(0.19) unknown(0) TCGA-73-4668-01 7 142028194 142028194 T A TRBV6-1 Missense_Mutation p.L6Q 0.17 deleterious(0) probably_damaging(0.992) TCGA-73-4668-01 7 142459634 142459634 G A PRSS1 Silent p.Q70Q 0.13 TCGA-73-4668-01 7 142573637 142573637 C T TRPV6 Silent p.Q261Q 0.43 TCGA-73-4668-01 7 142919493 142919493 A G TAS2R40 Missense_Mutation p.N108D 0.04 tolerated(0.11) benign(0.081) TCGA-73-4668-01 7 143882788 143882788 G T CTAGE4 Missense_Mutation p.G731V 0.16 deleterious(0) probably_damaging(0.947) TCGA-73-4668-01 7 150500528 150500528 G T TMEM176A Missense_Mutation p.R109L 0.24 deleterious(0.01) possibly_damaging(0.857) TCGA-73-4668-01 7 154876017 154876017 G T HTR5A Missense_Mutation p.W298C 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-73-4668-01 7 20685729 20685729 G T ABCB5 Nonsense_Mutation p.E317* 0.30 TCGA-73-4668-01 7 21742355 21742355 A T DNAH11 Missense_Mutation p.I2077F 0.16 possibly_damaging(0.813) TCGA-73-4668-01 7 21827034 21827034 C A DNAH11 Missense_Mutation p.Q3260K 0.25 probably_damaging(0.918) TCGA-73-4668-01 7 23826176 23826176 C T STK31 Missense_Mutation p.A775V 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-73-4668-01 7 29103813 29103813 G C CPVL Nonsense_Mutation p.S334* 0.25 TCGA-73-4668-01 7 34192785 34192785 G T BMPER Missense_Mutation p.G653V 0.32 deleterious(0) probably_damaging(0.939) TCGA-73-4668-01 7 36438966 36438966 G C ANLN Missense_Mutation p.E151Q 0.04 tolerated(0.2) possibly_damaging(0.767) TCGA-73-4668-01 7 38768381 38768381 C G VPS41 Missense_Mutation p.R757P 0.33 deleterious(0.01) probably_damaging(0.972) TCGA-73-4668-01 7 45139897 45139897 G A TBRG4 3'UTR 0.38 TCGA-73-4668-01 7 53104229 53104229 C A POM121L12 Missense_Mutation p.Q289K 0.45 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-73-4668-01 7 62752074 62752074 G T ZNF733P RNA 0.16 TCGA-73-4668-01 7 7420472 7420472 C T COL28A1 Missense_Mutation p.D743N 0.04 deleterious(0.03) benign(0.311) TCGA-73-4668-01 7 82584907 82584907 C A PCLO Nonsense_Mutation p.E1788* 0.34 TCGA-73-4668-01 7 87168622 87168622 G A ABCB1 Missense_Mutation p.R787W 0.05 deleterious(0) probably_damaging(0.997) TCGA-73-4668-01 7 87763675 87763675 T C ADAM22 Missense_Mutation p.L370P 0.43 deleterious(0) probably_damaging(0.998) TCGA-73-4668-01 7 8791179 8791179 A G NXPH1 Missense_Mutation p.E199G 0.28 deleterious(0.01) possibly_damaging(0.78) TCGA-73-4668-01 7 92300767 92300767 C A CDK6 Missense_Mutation p.C207F 0.12 deleterious(0) possibly_damaging(0.688) TCGA-73-4668-01 8 10623344 10623344 C A PINX1 Missense_Mutation p.R185L 0.04 deleterious(0) possibly_damaging(0.738) TCGA-73-4668-01 8 113395820 113395820 C A CSMD3 Missense_Mutation p.A2003S 0.35 tolerated(0.23) possibly_damaging(0.475) TCGA-73-4668-01 8 113697760 113697760 G A CSMD3 Missense_Mutation p.P786L 0.36 deleterious(0.05) benign(0.05) TCGA-73-4668-01 8 114031359 114031359 G T CSMD3 Missense_Mutation p.L323I 0.38 tolerated(0.06) possibly_damaging(0.881) TCGA-73-4668-01 8 116616109 116616109 C A TRPS1 Missense_Mutation p.R696L 0.20 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-73-4668-01 8 121267478 121267478 G C COL14A1 Splice_Site p.X918_splice 0.15 TCGA-73-4668-01 8 135614385 135614385 T A ZFAT Missense_Mutation p.Q526L 0.19 tolerated(0.48) benign(0.107) TCGA-73-4668-01 8 141549520 141549520 C T AGO2 Missense_Mutation p.A690T 0.21 deleterious(0) probably_damaging(0.922) TCGA-73-4668-01 8 144695114 144695114 C T TSTA3 Nonsense_Mutation p.W311* 0.33 TCGA-73-4668-01 8 27168490 27168490 T A TRIM35 Missense_Mutation p.E88V 0.47 deleterious(0.01) benign(0.354) TCGA-73-4668-01 8 36793536 36793536 A C KCNU1 3'UTR 0.39 TCGA-73-4668-01 8 87153747 87153747 A T ATP6V0D2 Nonsense_Mutation p.K184* 0.43 TCGA-73-4668-01 8 87666264 87666264 G T CNGB3 Missense_Mutation p.H293Q 0.20 deleterious(0.02) benign(0.403) TCGA-73-4668-01 8 88886241 88886241 C A DCAF4L2 5'UTR 0.24 TCGA-73-4668-01 8 93004034 93004034 C A RUNX1T1 Missense_Mutation p.R286L 0.14 deleterious(0.04) probably_damaging(0.983) TCGA-73-4668-01 8 97156922 97156922 C T GDF6 Missense_Mutation p.G413S 0.21 tolerated(0.35) benign(0.106) TCGA-73-4668-01 8 97797153 97797153 G T CPQ Missense_Mutation p.G10C 0.32 tolerated_low_confidence(0.09) possibly_damaging(0.554) TCGA-73-4668-01 8 98290054 98290054 C T TSPYL5 Missense_Mutation p.G7S 0.47 deleterious(0.01) unknown(0) TCGA-73-4668-01 8 99961558 99961558 G T OSR2 Silent p.T126T 0.18 TCGA-73-4668-01 9 115421828 115421828 G A KIAA1958 Missense_Mutation p.A544T 0.28 tolerated(0.63) benign(0) TCGA-73-4668-01 9 123526816 123526816 C G FBXW2 3'UTR 0.49 TCGA-73-4668-01 9 135866464 135866464 C T GFI1B 3'UTR 0.26 TCGA-73-4668-01 9 27948880 27948880 C A LINGO2 Missense_Mutation p.G597V 0.51 deleterious(0.01) possibly_damaging(0.762) TCGA-73-4668-01 9 27948881 27948881 C A LINGO2 Nonsense_Mutation p.G597* 0.50 TCGA-73-4668-01 9 36356463 36356463 T A RNF38 Missense_Mutation p.Q249L 0.59 deleterious(0) possibly_damaging(0.77) TCGA-73-4668-01 9 40772696 40772696 C A ZNF658 Missense_Mutation p.G860V 0.60 deleterious(0.02) possibly_damaging(0.746) TCGA-73-4668-01 9 6893162 6893162 G T KDM4C Missense_Mutation p.G284V 0.50 deleterious(0) probably_damaging(1) TCGA-73-4668-01 9 79441512 79441512 G A PRUNE2 Silent p.T215T 0.21 TCGA-73-4668-01 9 79820312 79820312 G C VPS13A Missense_Mutation p.V91L 0.38 deleterious(0.03) possibly_damaging(0.591) TCGA-73-4668-01 9 84605842 84605842 G A SPATA31D1 Missense_Mutation p.A153T 0.43 tolerated(1) benign(0.086) TCGA-73-4668-01 9 94984884 94984884 T A IARS Missense_Mutation p.Q1208H 0.24 tolerated_low_confidence(0.06) benign(0.001) TCGA-73-4668-01 9 97063626 97063628 CAG - ZNF169 In_Frame_Del p.Q596del 0.53 TCGA-73-4668-01 X 110653269 110653269 C A DCX Nonsense_Mutation p.E201* 0.45 TCGA-73-4668-01 X 112022354 112022354 C T AMOT Missense_Mutation p.V1010M 0.28 unknown(0) TCGA-73-4668-01 X 114874743 114874743 T A PLS3 Silent p.L305L 0.32 TCGA-73-4668-01 X 123780638 123780638 G A TENM1 Silent p.T534T 0.45 TCGA-73-4668-01 X 125298530 125298530 C A DCAF12L2 Missense_Mutation p.G460C 0.51 deleterious(0) probably_damaging(1) TCGA-73-4668-01 X 129545489 129545489 G T RBMX2 Missense_Mutation p.K157N 0.46 deleterious(0.02) benign(0.048) TCGA-73-4668-01 X 142717313 142717313 C A SLITRK4 Missense_Mutation p.D538Y 0.49 deleterious(0) probably_damaging(0.997) TCGA-73-4668-01 X 1508155 1508155 C A SLC25A6 Missense_Mutation p.G193C 0.32 deleterious(0.02) probably_damaging(0.973) TCGA-73-4668-01 X 155235036 155235036 C T IL9R Missense_Mutation p.R225C 0.05 deleterious(0) probably_damaging(0.998) TCGA-73-4668-01 X 23019064 23019064 C A DDX53 Missense_Mutation p.P297H 0.34 deleterious(0) probably_damaging(0.998) TCGA-73-4668-01 X 32305815 32305815 T A DMD Missense_Mutation p.I2041L 0.50 benign(0) TCGA-73-4668-01 X 32503158 32503158 C T DMD Missense_Mutation p.S894N 0.30 possibly_damaging(0.76) TCGA-73-4668-01 X 32662284 32662284 T C DMD Silent p.E432E 0.31 TCGA-73-4668-01 X 34149272 34149272 A G FAM47A Missense_Mutation p.L375P 0.35 deleterious(0) probably_damaging(0.991) TCGA-73-4668-01 X 36091257 36091257 A T CHDC2 Silent p.G64G 0.40 TCGA-73-4668-01 X 37028890 37028890 C A FAM47C Missense_Mutation p.P803T 0.46 deleterious(0) probably_damaging(0.99) TCGA-73-4668-01 X 50133404 50133404 C A DGKK RNA 0.44 TCGA-73-4668-01 X 51150166 51150166 C G CXorf67 Missense_Mutation p.R100G 0.36 tolerated(0.06) benign(0.049) TCGA-73-4668-01 X 51150497 51150497 G T CXorf67 Missense_Mutation p.R210M 0.56 deleterious(0.03) possibly_damaging(0.736) TCGA-73-4668-01 X 68381937 68381937 C G PJA1 Missense_Mutation p.R382P 0.53 tolerated(0.12) benign(0.264) TCGA-73-4668-01 X 73067895 73067895 G T XIST RNA 0.43 TCGA-73-4668-01 X 78616643 78616643 C A ITM2A Missense_Mutation p.W245C 0.55 tolerated(0.18) possibly_damaging(0.571) TCGA-73-4668-01 X 84526735 84526735 A T ZNF711 Missense_Mutation p.K729N 0.51 deleterious(0.05) probably_damaging(0.988) TCGA-73-4668-01 X 89177700 89177700 G A TGIF2LX Missense_Mutation p.V206M 0.46 tolerated(0.23) probably_damaging(0.987) TCGA-73-4668-01 X 96724772 96724772 G T DIAPH2 Intron 0.18 TCGA-73-4670-01 10 103281468 103281468 G A BTRC Missense_Mutation p.E133K 0.32 deleterious_low_confidence(0.04) benign(0.14) TCGA-73-4670-01 10 103587002 103587002 C T KCNIP2 3'Flank 0.35 TCGA-73-4670-01 10 104157747 104157747 G A NFKB2 Missense_Mutation p.G224E 0.13 tolerated(0.06) benign(0.322) TCGA-73-4670-01 10 106916929 106916929 A T SORCS3 Nonsense_Mutation p.K506* 0.32 TCGA-73-4670-01 10 115636690 115636690 A G NHLRC2 Missense_Mutation p.I248V 0.30 tolerated(0.36) benign(0.371) TCGA-73-4670-01 10 116038542 116038542 C T VWA2 Silent p.G255G 0.38 TCGA-73-4670-01 10 120801569 120801569 C T EIF3A Missense_Mutation p.D1155N 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.539) TCGA-73-4670-01 10 131671761 131671761 G A EBF3 Missense_Mutation p.R246C 0.35 deleterious(0) probably_damaging(0.916) TCGA-73-4670-01 10 15254805 15254805 G T FAM171A1 3'UTR 0.42 TCGA-73-4670-01 10 16948341 16948341 C T CUBN Silent p.R2591R 0.32 TCGA-73-4670-01 10 27538143 27538143 C G RP11-85G18.6 Intron 0.40 TCGA-73-4670-01 10 42965716 42965716 G A CCNYL2 Intron 0.42 TCGA-73-4670-01 10 43606770 43606770 A T RET Missense_Mutation p.D460V 0.28 tolerated(0.06) probably_damaging(0.929) TCGA-73-4670-01 10 70154113 70154113 C T RUFY2 Missense_Mutation p.C200Y 0.19 deleterious(0) possibly_damaging(0.813) TCGA-73-4670-01 10 71142369 71142369 C T HK1 Silent p.A468A 0.38 TCGA-73-4670-01 10 7214464 7214464 G T SFMBT2 Nonsense_Mutation p.S715* 0.27 TCGA-73-4670-01 10 72298677 72298677 G T PALD1 Silent p.A494A 0.38 TCGA-73-4670-01 10 73553131 73553131 G T CDH23 5'Flank 0.33 TCGA-73-4670-01 10 78713662 78713662 G T KCNMA1 Missense_Mutation p.P736H 0.33 deleterious(0.01) possibly_damaging(0.694) TCGA-73-4670-01 10 79784817 79784817 C A POLR3A Silent p.L134L 0.34 TCGA-73-4670-01 10 94594583 94594583 T C EXOC6 Splice_Site p.X50_splice 0.41 TCGA-73-4670-01 10 98741350 98741350 G T C10orf12 Missense_Mutation p.R68L 0.36 deleterious(0.03) benign(0.004) TCGA-73-4670-01 11 119290115 119290115 C A THY1 3'UTR 0.12 TCGA-73-4670-01 11 124946670 124946670 T A SLC37A2 Missense_Mutation p.L26Q 0.22 deleterious(0) probably_damaging(0.978) TCGA-73-4670-01 11 128391816 128391816 G A ETS1 Intron 0.41 TCGA-73-4670-01 11 131781262 131781262 C A NTM 5'Flank 0.55 TCGA-73-4670-01 11 21581884 21581884 G C NELL1 Missense_Mutation p.V646L 0.50 tolerated(0.06) benign(0.058) TCGA-73-4670-01 11 294777 294777 C T ATHL1 3'UTR 0.08 TCGA-73-4670-01 11 51412242 51412242 A G OR4A5 Missense_Mutation p.S52P 0.15 deleterious_low_confidence(0.02) benign(0.111) TCGA-73-4670-01 11 51515941 51515941 G C OR4C46 Missense_Mutation p.L220F 0.21 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-73-4670-01 11 55063102 55063102 T A TRIM51HP RNA 0.28 TCGA-73-4670-01 11 55063104 55063104 G A TRIM51HP RNA 0.28 TCGA-73-4670-01 11 55579099 55579099 T A OR5L1 Missense_Mutation p.S53T 0.21 deleterious(0.03) benign(0.009) TCGA-73-4670-01 11 57982931 57982931 C A OR1S1 Missense_Mutation p.L239M 0.38 tolerated(0.15) possibly_damaging(0.612) TCGA-73-4670-01 11 61042021 61042021 C A VWCE Missense_Mutation p.G511W 0.14 deleterious(0) probably_damaging(1) TCGA-73-4670-01 11 61084007 61084007 C A DDB1 Nonsense_Mutation p.E420* 0.22 TCGA-73-4670-01 11 61096852 61096852 T C DDB1 Missense_Mutation p.I178V 0.24 tolerated(0.26) benign(0.003) TCGA-73-4670-01 11 61099118 61099118 T G DDB1 Missense_Mutation p.N36T 0.22 tolerated(0.94) benign(0.316) TCGA-73-4670-01 11 63177395 63177395 C A SLC22A9 3'UTR 0.62 TCGA-73-4670-01 11 6498240 6498240 G C ARFIP2 3'UTR 0.69 TCGA-73-4670-01 11 67818087 67818087 G A TCIRG1 Silent p.V790V 0.15 TCGA-73-4670-01 11 678763 678763 C A DEAF1 Missense_Mutation p.G396C 0.60 deleterious_low_confidence(0.02) possibly_damaging(0.906) TCGA-73-4670-01 11 720164 720164 C T EPS8L2 Nonsense_Mutation p.Q90* 0.58 TCGA-73-4670-01 11 77921420 77921420 G T USP35 Missense_Mutation p.G840V 0.17 tolerated(0.13) probably_damaging(0.989) TCGA-73-4670-01 11 89402666 89402666 T C FOLH1B RNA 0.24 TCGA-73-4670-01 11 92086457 92086457 C T FAT3 Silent p.V393V 0.17 TCGA-73-4670-01 11 94731653 94731653 G T KDM4D Missense_Mutation p.G373C 0.42 deleterious(0.03) probably_damaging(0.95) TCGA-73-4670-01 12 108147700 108147700 C - PRDM4 Splice_Site p.X111_splice 0.39 TCGA-73-4670-01 12 111744885 111744885 G T CUX2 Missense_Mutation p.R340L 0.60 tolerated(0.09) benign(0.307) TCGA-73-4670-01 12 123089595 123089595 A C KNTC1 Missense_Mutation p.N1783H 0.52 tolerated(0.06) possibly_damaging(0.483) TCGA-73-4670-01 12 25378562 25378562 C G KRAS Missense_Mutation p.A146P 0.82 deleterious(0) probably_damaging(1) TCGA-73-4670-01 12 29920851 29920851 G A TMTC1 Missense_Mutation p.H154Y 0.73 deleterious(0) probably_damaging(0.999) TCGA-73-4670-01 12 40734100 40734100 C T LRRK2 Missense_Mutation p.L1985F 0.53 deleterious(0) probably_damaging(0.972) TCGA-73-4670-01 12 5155014 5155014 G T KCNA5 Silent p.G567G 0.70 TCGA-73-4670-01 12 52200403 52200403 G T SCN8A Silent p.L1711L 0.84 TCGA-73-4670-01 12 53071243 53071243 G T KRT1 Missense_Mutation p.Q329K 0.79 deleterious(0) possibly_damaging(0.602) TCGA-73-4670-01 12 56231060 56231060 G T MMP19 Silent p.P429P 0.81 TCGA-73-4670-01 12 58201181 58201181 C T AVIL Missense_Mutation p.R475Q 0.81 deleterious(0.01) possibly_damaging(0.649) TCGA-73-4670-01 12 6859920 6859920 T C MLF2 Missense_Mutation p.M77V 0.83 tolerated(0.71) benign(0.131) TCGA-73-4670-01 12 69158527 69158527 G T SLC35E3 Nonsense_Mutation p.G267* 0.58 TCGA-73-4670-01 12 75444827 75444827 A G KCNC2 Missense_Mutation p.F320L 0.04 tolerated(0.24) probably_damaging(0.957) TCGA-73-4670-01 12 81101730 81101730 C T MYF6 Silent p.L78L 0.20 TCGA-73-4670-01 12 9243990 9243990 G T A2M Missense_Mutation p.P759H 0.15 deleterious(0) probably_damaging(1) TCGA-73-4670-01 12 9251203 9251203 C T A2M Silent p.S617S 0.85 TCGA-73-4670-01 12 9317928 9317928 G T PZP Missense_Mutation p.P765H 0.73 deleterious(0) probably_damaging(0.999) TCGA-73-4670-01 13 102105126 102105126 C T ITGBL1 5'UTR 0.58 TCGA-73-4670-01 13 109475528 109475528 G T MYO16 Missense_Mutation p.W311C 0.24 deleterious(0) probably_damaging(0.968) TCGA-73-4670-01 13 110827079 110827079 C G COL4A1 Silent p.A1072A 0.35 TCGA-73-4670-01 13 28143266 28143267 - GC LNX2 Frame_Shift_Ins p.V186Qfs*8 0.42 TCGA-73-4670-01 13 36401830 36401830 A G DCLK1 Missense_Mutation p.L450P 0.22 tolerated(0.14) possibly_damaging(0.883) TCGA-73-4670-01 13 38357161 38357161 T A TRPC4 Missense_Mutation p.I104F 0.16 deleterious(0) probably_damaging(0.929) TCGA-73-4670-01 13 43935496 43935496 G T ENOX1 Missense_Mutation p.P101T 0.45 deleterious(0.02) benign(0.36) TCGA-73-4670-01 13 92345504 92345504 A G GPC5 Missense_Mutation p.Y130C 0.20 deleterious(0) probably_damaging(1) TCGA-73-4670-01 13 95899972 95899972 C T ABCC4 Missense_Mutation p.R37Q 0.42 tolerated(0.06) benign(0.426) TCGA-73-4670-01 14 100615316 100615316 T C DEGS2 Missense_Mutation p.N272D 0.12 tolerated(0.11) benign(0.102) TCGA-73-4670-01 14 101010278 101010278 G - BEGAIN Frame_Shift_Del p.R90Vfs*3 0.27 TCGA-73-4670-01 14 102973214 102973214 G A ANKRD9 3'UTR 0.48 TCGA-73-4670-01 14 104123946 104123946 C T KLC1 Nonsense_Mutation p.Q109* 0.10 TCGA-73-4670-01 14 105692428 105692429 - A BRF1 Frame_Shift_Ins p.L343Pfs*104 0.42 TCGA-73-4670-01 14 22592100 22592100 A G TRAV26-1 Missense_Mutation p.Q62R 0.38 tolerated(0.15) benign(0.029) TCGA-73-4670-01 14 23863354 23863354 C A MYH6 Missense_Mutation p.A870S 0.33 tolerated(0.18) benign(0.052) TCGA-73-4670-01 14 31074781 31074782 - T G2E3 Frame_Shift_Ins p.T361Ifs*2 0.19 TCGA-73-4670-01 14 45716193 45716193 C A MIS18BP1 Missense_Mutation p.K99N 0.41 tolerated(0.2) benign(0.003) TCGA-73-4670-01 14 50074328 50074328 G A LRR1 Missense_Mutation p.G165R 0.20 tolerated(0.6) benign(0.001) TCGA-73-4670-01 14 58060834 58060835 - GGA SLC35F4 In_Frame_Ins p.S73dup 0.26 TCGA-73-4670-01 14 63747808 63747808 C A RHOJ Silent p.L119L 0.20 TCGA-73-4670-01 14 71197546 71197546 C A MAP3K9 Missense_Mutation p.G970C 0.31 tolerated(0.18) possibly_damaging(0.698) TCGA-73-4670-01 14 74083828 74083828 G A ACOT6 5'UTR 0.38 TCGA-73-4670-01 14 75019619 75019619 C A LTBP2 Missense_Mutation p.D390Y 0.50 deleterious(0) probably_damaging(1) TCGA-73-4670-01 14 80669424 80669424 G T DIO2 Missense_Mutation p.R180S 0.38 tolerated(0.59) benign(0.005) TCGA-73-4670-01 14 90782973 90782973 T A NRDE2 Missense_Mutation p.D119V 0.25 tolerated(0.07) possibly_damaging(0.535) TCGA-73-4670-01 14 94067067 94067067 G A UNC79 Silent p.L998L 0.43 TCGA-73-4670-01 14 94914915 94914915 G A SERPINA11 Missense_Mutation p.A66V 0.22 tolerated(0.12) benign(0.057) TCGA-73-4670-01 14 95058670 95058670 A T SERPINA5 3'UTR 0.55 TCGA-73-4670-01 14 95921952 95921952 C G SYNE3 Missense_Mutation p.G300A 0.14 tolerated(0.52) benign(0.002) TCGA-73-4670-01 15 22873413 22873413 G A TUBGCP5 3'UTR 0.33 TCGA-73-4670-01 15 25449568 25449568 A G SNORD115-19 RNA 0.41 TCGA-73-4670-01 15 33603217 33603217 G T RYR3 5'UTR 0.46 TCGA-73-4670-01 15 33603235 33603235 G T RYR3 5'UTR 0.38 TCGA-73-4670-01 15 34648661 34648661 G A NUTM1 Missense_Mutation p.G790S 0.30 tolerated(0.2) benign(0.091) TCGA-73-4670-01 15 40462863 40462863 T A BUB1B Missense_Mutation p.L122H 0.13 deleterious(0) probably_damaging(1) TCGA-73-4670-01 15 42058761 42058761 C T MGA Silent p.L2827L 0.12 TCGA-73-4670-01 15 45557792 45557792 C T SLC28A2 Silent p.I264I 0.08 TCGA-73-4670-01 15 48063496 48063496 G T SEMA6D Missense_Mutation p.M912I 0.28 tolerated(0.43) benign(0.001) TCGA-73-4670-01 15 48063497 48063497 G T SEMA6D Nonsense_Mutation p.G913* 0.29 TCGA-73-4670-01 15 49431798 49431798 C A COPS2 Missense_Mutation p.R100L 0.39 deleterious(0) benign(0.021) TCGA-73-4670-01 15 56757291 56757293 GTC TT MNS1 5'UTR 0.38 TCGA-73-4670-01 15 65499138 65499138 G A CILP Missense_Mutation p.R136C 0.17 deleterious(0) probably_damaging(0.999) TCGA-73-4670-01 15 68500662 68500662 T C CLN6 Missense_Mutation p.K251R 0.17 tolerated(0.5) benign(0.01) TCGA-73-4670-01 15 74654233 74654233 C T CYP11A1 Intron 0.33 TCGA-73-4670-01 15 79177320 79177320 G T MORF4L1 Missense_Mutation p.R56M 0.34 deleterious_low_confidence(0.03) benign(0.265) TCGA-73-4670-01 15 83807849 83807849 C T HDGFRP3 3'UTR 0.23 TCGA-73-4670-01 15 88524525 88524525 G T NTRK3 Intron 0.30 TCGA-73-4670-01 15 88669516 88669516 T C NTRK3 Missense_Mutation p.K461R 0.27 deleterious(0.05) possibly_damaging(0.677) TCGA-73-4670-01 16 31368684 31368684 G T ITGAX Missense_Mutation p.Q143H 0.73 tolerated(0.05) possibly_damaging(0.477) TCGA-73-4670-01 16 53503961 53503961 A G RBL2 Silent p.L703L 0.20 TCGA-73-4670-01 16 56701272 56701272 C A MT1G Missense_Mutation p.A16S 0.19 tolerated(0.21) unknown(0) TCGA-73-4670-01 16 61687553 61687553 C A CDH8 Missense_Mutation p.G787C 0.48 deleterious(0) probably_damaging(1) TCGA-73-4670-01 16 61854977 61854977 G T CDH8 Silent p.G292G 0.17 TCGA-73-4670-01 16 67961404 67961405 - G PSKH1 Frame_Shift_Ins p.A379Gfs*24 0.45 TCGA-73-4670-01 16 70871619 70871619 T - HYDIN Frame_Shift_Del p.I4406Sfs*8 0.17 TCGA-73-4670-01 16 814687 814687 A T MSLN Missense_Mutation p.D114V 0.59 deleterious(0) probably_damaging(0.983) TCGA-73-4670-01 17 10439914 10439914 C T MYH2 Missense_Mutation p.G636D 0.62 tolerated(0.62) benign(0.089) TCGA-73-4670-01 17 25746877 25746877 G T TBC1D3P5 Intron 0.16 TCGA-73-4670-01 17 30192423 30192423 T A UTP6 Missense_Mutation p.Y533F 0.47 tolerated(0.11) benign(0.224) TCGA-73-4670-01 17 3181334 3181334 T C OR3A2 Missense_Mutation p.Y299C 0.64 deleterious(0) probably_damaging(1) TCGA-73-4670-01 17 3785657 3785657 C T CAMKK1 Silent p.Q231Q 0.09 TCGA-73-4670-01 17 38245466 38245466 G C THRA Silent p.S330S 0.22 TCGA-73-4670-01 17 38552628 38552628 T G TOP2A Missense_Mutation p.E1209D 0.18 tolerated(0.13) benign(0.021) TCGA-73-4670-01 17 39661336 39661336 T C KRT13 Missense_Mutation p.Y156C 0.13 deleterious(0) probably_damaging(0.987) TCGA-73-4670-01 17 40996621 40996621 G A AOC2 5'UTR 0.45 TCGA-73-4670-01 17 42336630 42336630 C A SLC4A1 Silent p.P259P 0.26 TCGA-73-4670-01 17 4451462 4451462 G A MYBBP1A Missense_Mutation p.A567V 0.57 tolerated(0.25) benign(0.157) TCGA-73-4670-01 17 45788015 45788015 T C TBKBP1 3'UTR 0.17 TCGA-73-4670-01 17 4796591 4796591 G A MINK1 Intron 0.20 TCGA-73-4670-01 17 48628452 48628452 G T SPATA20 Missense_Mutation p.V493L 0.17 tolerated(0.52) benign(0.006) TCGA-73-4670-01 17 48685363 48685363 T C CACNA1G Missense_Mutation p.L1563P 0.19 deleterious(0.04) benign(0.06) TCGA-73-4670-01 17 5993695 5993695 G T WSCD1 Silent p.R199R 0.56 TCGA-73-4670-01 17 60767343 60767343 C T MRC2 Missense_Mutation p.T1221I 0.33 tolerated(0.36) benign(0.01) TCGA-73-4670-01 17 61613303 61613303 G T KCNH6 Missense_Mutation p.V459L 0.43 tolerated(0.14) benign(0.241) TCGA-73-4670-01 17 6328913 6328913 T C AIPL1 Missense_Mutation p.E341G 0.52 tolerated(0.32) unknown(0) TCGA-73-4670-01 17 6386989 6386989 C T PITPNM3 Silent p.G145G 0.62 TCGA-73-4670-01 17 68128830 68128830 G T KCNJ16 Missense_Mutation p.W201L 0.43 deleterious(0) probably_damaging(1) TCGA-73-4670-01 17 73837068 73837072 ATGTC T UNC13D Frame_Shift_Del p.D194Tfs*54 0.12 TCGA-73-4670-01 17 73887249 73887249 G A TRIM65 Missense_Mutation p.R389C 0.29 deleterious(0.03) benign(0.094) TCGA-73-4670-01 17 7577610 7577610 T C TP53 Splice_Site p.X225_splice 0.57 TCGA-73-4670-01 17 77082391 77082391 A T ENGASE Missense_Mutation p.E731V 0.35 tolerated(0.08) benign(0.389) TCGA-73-4670-01 17 78219001 78219001 C A SLC26A11 Missense_Mutation p.T348N 0.47 deleterious(0.01) possibly_damaging(0.756) TCGA-73-4670-01 18 13826676 13826676 G T MC5R Missense_Mutation p.K304N 0.43 tolerated(0.21) benign(0.002) TCGA-73-4670-01 18 28993427 28993427 G C DSG4 Missense_Mutation p.G1017R 0.57 deleterious(0.02) possibly_damaging(0.568) TCGA-73-4670-01 18 29027857 29027857 C A DSG3 Missense_Mutation p.P6H 0.54 tolerated(0.55) benign(0.257) TCGA-73-4670-01 18 30275470 30275470 T G KLHL14 Missense_Mutation p.N372T 0.44 deleterious(0.01) probably_damaging(0.982) TCGA-73-4670-01 18 44260213 44260213 G T ST8SIA5 Missense_Mutation p.A308E 0.42 probably_damaging(0.999) TCGA-73-4670-01 18 47527658 47527658 T G MYO5B Missense_Mutation p.E193D 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-73-4670-01 18 8784097 8784097 G T SOGA2 Silent p.G329G 0.32 TCGA-73-4670-01 19 10610343 10610343 C A KEAP1 Missense_Mutation p.V123L 0.57 deleterious(0.03) possibly_damaging(0.498) TCGA-73-4670-01 19 1221228 1221228 G C STK11 Missense_Mutation p.G251R 0.68 deleterious(0) probably_damaging(0.996) TCGA-73-4670-01 19 16275587 16275587 C T CIB3 Missense_Mutation p.G162R 0.61 deleterious(0.02) probably_damaging(1) TCGA-73-4670-01 19 22846654 22846654 T A ZNF492 Missense_Mutation p.N61K 0.76 deleterious(0.01) possibly_damaging(0.727) TCGA-73-4670-01 19 23405524 23405524 C A ZNF724P Missense_Mutation p.C508F 0.53 deleterious(0.01) probably_damaging(0.998) TCGA-73-4670-01 19 36340263 36340263 G T NPHS1 Missense_Mutation p.P239T 0.63 deleterious(0) probably_damaging(0.963) TCGA-73-4670-01 19 42525511 42525511 G T GRIK5 Missense_Mutation p.Q605K 0.36 deleterious(0.01) possibly_damaging(0.509) TCGA-73-4670-01 19 43674209 43674209 G T PSG5 Intron 0.54 TCGA-73-4670-01 19 43757688 43757688 T - PSG9 3'UTR 0.23 TCGA-73-4670-01 19 50148669 50148669 G A SCAF1 Splice_Site p.X56_splice 0.51 TCGA-73-4670-01 19 51918829 51918829 G T SIGLEC10 Missense_Mutation p.N355K 0.61 deleterious(0) probably_damaging(0.986) TCGA-73-4670-01 19 55671280 55671280 A G DNAAF3 Missense_Mutation p.Y451H 0.55 deleterious(0) probably_damaging(0.994) TCGA-73-4670-01 19 56895924 56895924 A T ZNF582 Missense_Mutation p.C288S 0.49 deleterious(0) probably_damaging(0.991) TCGA-73-4670-01 19 57723654 57723654 A T ZNF264 Nonsense_Mutation p.K397* 0.52 TCGA-73-4670-01 19 58350457 58350457 G T ZNF587B Missense_Mutation p.A35S 0.54 deleterious(0.02) possibly_damaging(0.803) TCGA-73-4670-01 19 881704 881704 T C MED16 Silent p.K332K 0.60 TCGA-73-4670-01 19 9076248 9076248 A T MUC16 Missense_Mutation p.L3733Q 0.50 unknown(0) TCGA-73-4670-01 1 104203009 104203009 G T AMY1A Missense_Mutation p.M302I 0.26 tolerated(0.14) benign(0.012) TCGA-73-4670-01 1 13111691 13111691 G C PRAMEF23 RNA 0.26 TCGA-73-4670-01 1 150131409 150131409 G A PLEKHO1 Silent p.R307R 0.34 TCGA-73-4670-01 1 150201429 150201429 C A ANP32E Missense_Mutation p.D157Y 0.34 deleterious(0.01) unknown(0) TCGA-73-4670-01 1 152187938 152187938 C A HRNR Missense_Mutation p.G2056V 0.18 unknown(0) TCGA-73-4670-01 1 152280188 152280188 G - FLG Frame_Shift_Del p.H2392Ifs*27 0.32 TCGA-73-4670-01 1 152285923 152285923 G C FLG Missense_Mutation p.S480C 0.29 probably_damaging(0.987) TCGA-73-4670-01 1 154461700 154461700 C A SHE Missense_Mutation p.G284V 0.42 tolerated(0.12) benign(0.13) TCGA-73-4670-01 1 156911687 156911687 C A ARHGEF11 Nonsense_Mutation p.E1141* 0.41 TCGA-73-4670-01 1 158913669 158913669 C T PYHIN1 Silent p.I364I 0.19 TCGA-73-4670-01 1 162353080 162353080 G T C1orf226 Missense_Mutation p.Q185H 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-73-4670-01 1 165398198 165398198 G T RXRG Missense_Mutation p.P19T 0.28 deleterious_low_confidence(0.02) benign(0.064) TCGA-73-4670-01 1 16952893 16952893 C T CROCCP2 3'Flank 0.04 TCGA-73-4670-01 1 16953729 16953729 C T CROCCP2 3'Flank 0.07 TCGA-73-4670-01 1 169816850 169816850 C T C1orf112 Missense_Mutation p.S655L 0.32 tolerated(0.08) benign(0.329) TCGA-73-4670-01 1 170699423 170699423 C A PRRX1 Intron 0.33 TCGA-73-4670-01 1 176927511 176927511 A T ASTN1 Missense_Mutation p.M569K 0.39 deleterious(0) possibly_damaging(0.558) TCGA-73-4670-01 1 177250277 177250277 C G BRINP2 Missense_Mutation p.D655E 0.33 tolerated(1) benign(0.098) TCGA-73-4670-01 1 180910191 180910191 G A KIAA1614 Missense_Mutation p.G977R 0.37 tolerated(0.09) benign(0.305) TCGA-73-4670-01 1 19184031 19184031 G T TAS1R2 Missense_Mutation p.L93M 0.37 tolerated(0.07) benign(0.159) TCGA-73-4670-01 1 197112095 197112095 C T ASPM Nonsense_Mutation p.W429* 0.15 TCGA-73-4670-01 1 20249235 20249235 G T PLA2G2E Silent p.T18T 0.33 TCGA-73-4670-01 1 203012563 203012563 G C PPFIA4 Silent p.R91R 0.26 TCGA-73-4670-01 1 20304928 20304928 A G PLA2G2A Missense_Mutation p.Y44H 0.47 deleterious(0) probably_damaging(1) TCGA-73-4670-01 1 205156672 205156672 C A DSTYK Silent p.T176T 0.34 TCGA-73-4670-01 1 208390425 208390425 C A PLXNA2 Silent p.V281V 0.38 TCGA-73-4670-01 1 21205816 21205816 C A EIF4G3 Silent p.T824T 0.32 TCGA-73-4670-01 1 220088835 220088835 T A SLC30A10 Nonsense_Mutation p.K472* 0.31 TCGA-73-4670-01 1 226485450 226485450 T A LIN9 Missense_Mutation p.K59N 0.35 deleterious_low_confidence(0.03) benign(0.301) TCGA-73-4670-01 1 237604627 237604627 G A RYR2 Silent p.L338L 0.35 TCGA-73-4670-01 1 237664018 237664018 T G RYR2 Missense_Mutation p.I737M 0.31 benign(0.024) TCGA-73-4670-01 1 237870570 237870570 G T RYR2 Splice_Site p.X3301_splice 0.53 TCGA-73-4670-01 1 248129593 248129593 G A OR2AK2 Silent p.L320L 0.26 TCGA-73-4670-01 1 248367177 248367177 C A OR2M3 Missense_Mutation p.Q270K 0.34 tolerated(0.29) benign(0.018) TCGA-73-4670-01 1 34330145 34330145 G T HMGB4 Missense_Mutation p.W118L 0.31 tolerated(1) probably_damaging(1) TCGA-73-4670-01 1 54331952 54331952 C T YIPF1 Missense_Mutation p.R251H 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-73-4670-01 1 57537224 57537224 C A DAB1 Missense_Mutation p.D177Y 0.23 deleterious(0.01) probably_damaging(0.987) TCGA-73-4670-01 1 66798085 66798085 G - PDE4B Intron 0.30 TCGA-73-4670-01 1 71318405 71318405 G T PTGER3 3'UTR 0.30 TCGA-73-4670-01 1 76190449 76190449 C T ACADM 5'Flank 0.22 TCGA-73-4670-01 1 76190450 76190450 G C ACADM 5'Flank 0.22 TCGA-73-4670-01 1 76349325 76349325 T C MSH4 Silent p.D642D 0.40 TCGA-73-4670-01 1 86919278 86919278 G T CLCA2 Missense_Mutation p.Q794H 0.29 tolerated(0.54) benign(0.02) TCGA-73-4670-01 1 97278974 97278974 G T PTBP2 3'UTR 0.23 TCGA-73-4670-01 1 99771933 99771933 T C LPPR4 Silent p.A553A 0.25 TCGA-73-4670-01 20 34487409 34487409 A T PHF20 Missense_Mutation p.K467I 0.37 deleterious(0) probably_damaging(0.917) TCGA-73-4670-01 20 40116400 40116400 C A CHD6 Nonsense_Mutation p.E636* 0.39 TCGA-73-4670-01 20 40116401 40116401 C A CHD6 Missense_Mutation p.E635D 0.40 tolerated(0.06) possibly_damaging(0.576) TCGA-73-4670-01 20 57415374 57415374 C T RP4-806M20.3 5'Flank 0.26 TCGA-73-4670-01 20 57768208 57768208 G T ZNF831 Nonsense_Mutation p.E712* 0.57 TCGA-73-4670-01 21 10951294 10951294 C A TPTE Missense_Mutation p.D140Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-73-4670-01 21 10951295 10951295 C A TPTE Missense_Mutation p.M139I 0.28 tolerated(0.64) benign(0.101) TCGA-73-4670-01 22 28196355 28196355 C A MN1 Silent p.P59P 0.62 TCGA-73-4670-01 22 32586720 32586720 A C RFPL2 3'UTR 0.64 TCGA-73-4670-01 22 46611143 46611143 C T PPARA Silent p.P94P 0.78 TCGA-73-4670-01 2 100627997 100627997 T C AFF3 Silent p.L30L 0.18 TCGA-73-4670-01 2 102789251 102789251 A G IL1R1 Missense_Mutation p.K315R 0.30 tolerated(0.62) benign(0.018) TCGA-73-4670-01 2 12880878 12880878 G A TRIB2 Silent p.P330P 0.45 TCGA-73-4670-01 2 151326622 151326622 A C RND3 Missense_Mutation p.V205G 0.49 tolerated(0.06) benign(0.011) TCGA-73-4670-01 2 165796039 165796039 C T SLC38A11 Missense_Mutation p.R97H 0.38 deleterious(0.01) benign(0.347) TCGA-73-4670-01 2 168098402 168098402 C A XIRP2 Silent p.T386T 0.36 TCGA-73-4670-01 2 179477787 179477787 G T TTN Missense_Mutation p.P16554H 0.19 TCGA-73-4670-01 2 179584914 179584914 C - TTN Frame_Shift_Del p.E7819Rfs*11 0.27 TCGA-73-4670-01 2 185802439 185802439 T C ZNF804A Silent p.R772R 0.19 TCGA-73-4670-01 2 200246416 200246416 C A SATB2 Splice_Site p.X158_splice 0.27 TCGA-73-4670-01 2 202671362 202671362 G C CDK15 5'UTR 0.31 TCGA-73-4670-01 2 211541795 211541795 C G CPS1 Missense_Mutation p.H1453D 0.21 deleterious(0.04) benign(0.076) TCGA-73-4670-01 2 21232872 21232872 C A APOB Nonsense_Mutation p.E2290* 0.44 TCGA-73-4670-01 2 215812271 215812271 T C ABCA12 Missense_Mutation p.K2372E 0.12 tolerated(0.68) benign(0.217) TCGA-73-4670-01 2 231973147 231973147 T C HTR2B 3'UTR 0.43 TCGA-73-4670-01 2 233199125 233199125 G T DIS3L2 Missense_Mutation p.Q735H 0.50 deleterious(0.02) possibly_damaging(0.841) TCGA-73-4670-01 2 238820227 238820227 C T RAMP1 Silent p.F83F 0.47 TCGA-73-4670-01 2 241631418 241631418 C A AQP12A Missense_Mutation p.P30T 0.22 deleterious(0.02) benign(0.356) TCGA-73-4670-01 2 241631419 241631419 C A AQP12A Missense_Mutation p.P30Q 0.21 deleterious(0.01) possibly_damaging(0.726) TCGA-73-4670-01 2 26705389 26705389 G A OTOF Silent p.F488F 0.37 TCGA-73-4670-01 2 27375604 27375604 G C TCF23 Missense_Mutation p.D172H 0.17 tolerated(0.06) possibly_damaging(0.666) TCGA-73-4670-01 2 31181310 31181310 G T GALNT14 Missense_Mutation p.T145K 0.14 tolerated(0.82) benign(0.148) TCGA-73-4670-01 2 32417450 32417450 G A SLC30A6 Silent p.L150L 0.17 TCGA-73-4670-01 2 39088702 39088702 T A DHX57 Nonsense_Mutation p.R284* 0.22 TCGA-73-4670-01 2 44565504 44565504 C A PREPL Missense_Mutation p.V381F 0.17 deleterious(0.01) benign(0.142) TCGA-73-4670-01 2 46808292 46808292 C T RHOQ 3'UTR 0.52 TCGA-73-4670-01 2 63631476 63631476 G A WDPCP Missense_Mutation p.S381L 0.45 deleterious(0.02) benign(0.403) TCGA-73-4670-01 2 63667040 63667040 G - WDPCP Intron 0.22 TCGA-73-4670-01 2 69784102 69784102 C A AAK1 Missense_Mutation p.A58S 0.20 tolerated(0.21) unknown(0) TCGA-73-4670-01 2 79314758 79314758 C G REG1B 5'UTR 0.15 TCGA-73-4670-01 2 84668395 84668396 CC A SUCLG1 Frame_Shift_Del p.G169Vfs*37 0.29 TCGA-73-4670-01 2 89544266 89544266 G A IGKV2-30 Missense_Mutation p.P120S 0.15 deleterious(0) probably_damaging(0.995) TCGA-73-4670-01 2 90139530 90139530 C A IGKV1D-16 Missense_Mutation p.Q101K 0.12 tolerated(0.06) benign(0.038) TCGA-73-4670-01 2 90193360 90193360 C A IGKV1D-13 Missense_Mutation p.T96N 0.21 deleterious(0) probably_damaging(0.956) TCGA-73-4670-01 2 90193361 90193361 C A IGKV1D-13 Silent p.T96T 0.21 TCGA-73-4670-01 2 96799187 96799187 G A ASTL Silent p.F144F 0.20 TCGA-73-4670-01 2 97866197 97866197 G T ANKRD36 Missense_Mutation p.S931I 0.19 deleterious_low_confidence(0.01) benign(0.403) TCGA-73-4670-01 3 111632707 111632707 G A PHLDB2 Intron 0.65 TCGA-73-4670-01 3 118647443 118647443 A T IGSF11 Missense_Mutation p.S113T 0.69 tolerated(0.14) benign(0.395) TCGA-73-4670-01 3 122170440 122170440 C T KPNA1 Missense_Mutation p.A232T 0.63 deleterious(0.02) benign(0.439) TCGA-73-4670-01 3 126915771 126915771 G C C3orf56 Silent p.V81V 0.77 TCGA-73-4670-01 3 14940269 14940269 G C FGD5 Missense_Mutation p.Q1030H 0.60 tolerated(0.55) possibly_damaging(0.863) TCGA-73-4670-01 3 149678821 149678821 A G RNF13 Missense_Mutation p.N359S 0.72 tolerated_low_confidence(0.41) benign(0.001) TCGA-73-4670-01 3 154860027 154860027 G T MME Missense_Mutation p.D366Y 0.36 deleterious(0.02) probably_damaging(0.995) TCGA-73-4670-01 3 157818062 157818062 T G SHOX2 Missense_Mutation p.Q222H 0.07 tolerated(0.23) possibly_damaging(0.537) TCGA-73-4670-01 3 167293712 167293713 - TTCAAGATA WDR49 In_Frame_Ins p.L160delinsFILK 0.08 TCGA-73-4670-01 3 170108088 170108088 A G SKIL Missense_Mutation p.K503E 0.68 tolerated(0.9) benign(0.001) TCGA-73-4670-01 3 183705647 183705647 G C ABCC5 Missense_Mutation p.R168G 0.58 tolerated(0.57) benign(0) TCGA-73-4670-01 3 3076339 3076339 G A CNTN4 Missense_Mutation p.V603M 0.64 deleterious(0.01) probably_damaging(0.99) TCGA-73-4670-01 3 32586469 32586469 C A DYNC1LI1 Missense_Mutation p.W156L 0.55 deleterious(0) probably_damaging(1) TCGA-73-4670-01 3 33863558 33863558 C T PDCD6IP Missense_Mutation p.A149V 0.22 deleterious(0) probably_damaging(0.962) TCGA-73-4670-01 3 48612517 48612517 G C COL7A1 Missense_Mutation p.P2087A 0.65 unknown(0) TCGA-73-4670-01 3 51752135 51752135 C A GRM2 3'UTR 0.51 TCGA-73-4670-01 3 52439224 52439224 C T BAP1 Missense_Mutation p.G340S 0.60 tolerated_low_confidence(0.39) benign(0.075) TCGA-73-4670-01 3 52442492 52442492 G A BAP1 Nonsense_Mutation p.Q85* 0.23 TCGA-73-4670-01 3 71090529 71090529 T - FOXP1 Frame_Shift_Del p.H276Mfs*51 0.46 TCGA-73-4670-01 3 98188519 98188519 C A OR5K1 Silent p.A33A 0.64 TCGA-73-4670-01 4 100063931 100063931 C A ADH4 Missense_Mutation p.V7F 0.32 deleterious(0.01) possibly_damaging(0.703) TCGA-73-4670-01 4 104070561 104070561 T A CENPE Missense_Mutation p.Q1134L 0.19 benign(0.282) TCGA-73-4670-01 4 108566169 108566169 A G PAPSS1 Missense_Mutation p.M432T 0.31 deleterious(0) probably_damaging(0.999) TCGA-73-4670-01 4 141889013 141889013 C T RNF150 Missense_Mutation p.V167M 0.35 deleterious(0) probably_damaging(0.999) TCGA-73-4670-01 4 159572982 159572982 G T RXFP1 Silent p.L683L 0.25 TCGA-73-4670-01 4 164507069 164507069 G A MARCH1 Silent p.C85C 0.30 TCGA-73-4670-01 4 174169580 174169580 A G GALNT7 Silent p.L192L 0.28 TCGA-73-4670-01 4 178257373 178257373 G C NEIL3 Silent p.R175R 0.24 TCGA-73-4670-01 4 183696202 183696202 A C TENM3 Silent p.R1734R 0.24 TCGA-73-4670-01 4 1957494 1957494 G T WHSC1 Missense_Mutation p.G865C 0.26 deleterious(0) probably_damaging(1) TCGA-73-4670-01 4 2956197 2956197 C A NOP14 Missense_Mutation p.R189L 0.33 deleterious(0) probably_damaging(0.971) TCGA-73-4670-01 4 39271647 39271647 A C WDR19 Missense_Mutation p.K1137T 0.30 deleterious(0.01) benign(0.087) TCGA-73-4670-01 4 420723 420723 T C ABCA11P RNA 0.12 TCGA-73-4670-01 4 43032600 43032600 G T GRXCR1 3'UTR 0.27 TCGA-73-4670-01 4 54232021 54232021 C A SCFD2 Missense_Mutation p.A30S 0.39 tolerated(0.82) benign(0.011) TCGA-73-4670-01 4 57181921 57181921 G A KIAA1211 Silent p.L751L 0.31 TCGA-73-4670-01 4 57215535 57215535 C A AASDH Missense_Mutation p.M794I 0.05 tolerated(0.37) benign(0.013) TCGA-73-4670-01 4 68930431 68930431 G T TMPRSS11F Silent p.V329V 0.31 TCGA-73-4670-01 4 77675915 77675915 C T SHROOM3 Missense_Mutation p.P1427S 0.30 tolerated(0.43) benign(0.002) TCGA-73-4670-01 4 88767146 88767146 C A MEPE Missense_Mutation p.P376T 0.30 tolerated(0.26) benign(0.059) TCGA-73-4670-01 5 111091510 111091510 C T NREP Intron 0.18 TCGA-73-4670-01 5 11364947 11364947 C G CTNND2 Silent p.R411R 0.29 TCGA-73-4670-01 5 121187857 121187857 C T FTMT Missense_Mutation p.R67W 0.52 deleterious(0) possibly_damaging(0.477) TCGA-73-4670-01 5 121402391 121402391 C A LOX 3'UTR 0.57 TCGA-73-4670-01 5 130766776 130766776 G C RAPGEF6 Missense_Mutation p.S1422C 0.04 tolerated_low_confidence(0.07) benign(0.394) TCGA-73-4670-01 5 140589131 140589131 G C PCDHB12 Missense_Mutation p.G218R 0.63 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-73-4670-01 5 146750236 146750236 C T STK32A Missense_Mutation p.S227F 0.52 deleterious(0) probably_damaging(0.995) TCGA-73-4670-01 5 150276176 150276176 T C ZNF300 Missense_Mutation p.R225G 0.04 tolerated(0.41) benign(0.003) TCGA-73-4670-01 5 175111083 175111083 C A HRH2 Missense_Mutation p.L283M 0.54 deleterious(0) probably_damaging(1) TCGA-73-4670-01 5 21975206 21975206 G C CDH12 Missense_Mutation p.P174A 0.31 tolerated(0.14) benign(0.234) TCGA-73-4670-01 5 22142630 22142631 AG T CDH12 Intron 0.40 TCGA-73-4670-01 5 36105281 36105281 C A LMBRD2 Missense_Mutation p.R639M 0.10 deleterious(0.03) possibly_damaging(0.784) TCGA-73-4670-01 5 38425153 38425153 G T EGFLAM Missense_Mutation p.C590F 0.24 deleterious(0) probably_damaging(1) TCGA-73-4670-01 5 41160328 41160328 G T C6 Missense_Mutation p.L534I 0.07 deleterious(0) possibly_damaging(0.849) TCGA-73-4670-01 5 5232579 5232579 G T ADAMTS16 Missense_Mutation p.R600S 0.32 deleterious(0) probably_damaging(0.998) TCGA-73-4670-01 5 5463749 5463749 A T KIAA0947 Silent p.P1434P 0.31 TCGA-73-4670-01 5 79355630 79355630 C T THBS4 Nonsense_Mutation p.R297* 0.04 TCGA-73-4670-01 6 102074443 102074443 C G GRIK2 Missense_Mutation p.R158G 0.62 tolerated(0.05) benign(0.313) TCGA-73-4670-01 6 108225907 108225907 T G SEC63 Missense_Mutation p.K327T 0.50 deleterious(0.01) possibly_damaging(0.507) TCGA-73-4670-01 6 128134688 128134688 G C THEMIS Missense_Mutation p.H366Q 0.66 deleterious(0.01) probably_damaging(0.997) TCGA-73-4670-01 6 131962629 131962629 G A ENPP3 Missense_Mutation p.G38E 0.11 deleterious(0) possibly_damaging(0.873) TCGA-73-4670-01 6 132910781 132910781 T A TAAR5 Silent p.A15A 0.69 TCGA-73-4670-01 6 132966892 132966892 G C TAAR1 Missense_Mutation p.S84C 0.44 deleterious(0.02) benign(0.049) TCGA-73-4670-01 6 139167810 139167810 A G ECT2L Missense_Mutation p.Y300C 0.57 deleterious(0) benign(0.033) TCGA-73-4670-01 6 158914673 158914673 G T TULP4 Missense_Mutation p.R567L 0.64 deleterious(0) probably_damaging(0.994) TCGA-73-4670-01 6 28116494 28116494 A G ZKSCAN8 Silent p.L103L 0.54 TCGA-73-4670-01 6 32975902 32975902 C T HLA-DOA Silent p.E73E 0.33 TCGA-73-4670-01 6 36260888 36260888 G A PNPLA1 Silent p.P163P 0.40 TCGA-73-4670-01 6 40360309 40360309 G - LRFN2 Frame_Shift_Del p.A582Pfs*75 0.36 TCGA-73-4670-01 6 4892131 4892131 G A CDYL Missense_Mutation p.R70K 0.32 tolerated(0.11) possibly_damaging(0.81) TCGA-73-4670-01 6 51613441 51613441 C T PKHD1 Silent p.V2991V 0.11 TCGA-73-4670-01 6 75827262 75827262 C T COL12A1 Missense_Mutation p.G2452E 0.56 probably_damaging(1) TCGA-73-4670-01 6 80982857 80982857 G C BCKDHB Silent p.V319V 0.59 TCGA-73-4670-01 6 83898345 83898345 C T PGM3 Missense_Mutation p.G154D 0.15 deleterious(0) probably_damaging(0.977) TCGA-73-4670-01 6 87795419 87795419 T A CGA 3'UTR 0.56 TCGA-73-4670-01 6 96651512 96651512 G A FUT9 Missense_Mutation p.D161N 0.17 tolerated(0.05) probably_damaging(0.967) TCGA-73-4670-01 7 100087052 100087052 G - NYAP1 Frame_Shift_Del p.V572Cfs*2 0.44 TCGA-73-4670-01 7 102236538 102236538 C T RASA4 Missense_Mutation p.R259Q 0.53 tolerated(0.45) possibly_damaging(0.669) TCGA-73-4670-01 7 107236320 107236320 G A BCAP29 Missense_Mutation p.R118K 0.25 tolerated(0.11) probably_damaging(0.998) TCGA-73-4670-01 7 11446939 11446939 G T THSD7A Missense_Mutation p.L1304I 0.42 tolerated(0.26) possibly_damaging(0.703) TCGA-73-4670-01 7 117267576 117267576 A T CFTR Missense_Mutation p.M1157L 0.32 deleterious(0.02) benign(0.379) TCGA-73-4670-01 7 117400585 117400585 A G CTTNBP2 Missense_Mutation p.S1026P 0.36 tolerated(0.08) possibly_damaging(0.512) TCGA-73-4670-01 7 117874861 117874861 G T ANKRD7 Missense_Mutation p.C134F 0.34 tolerated(0.38) possibly_damaging(0.803) TCGA-73-4670-01 7 12263849 12263849 C T TMEM106B Intron 0.37 TCGA-73-4670-01 7 126086394 126086394 G - GRM8 Frame_Shift_Del p.M822* 0.28 TCGA-73-4670-01 7 127252046 127252046 G T PAX4 Missense_Mutation p.Q234K 0.33 deleterious(0.04) benign(0.106) TCGA-73-4670-01 7 128492942 128492942 A C FLNC Missense_Mutation p.K2022T 0.14 tolerated(0.05) benign(0.038) TCGA-73-4670-01 7 142562406 142562406 G T EPHB6 Missense_Mutation p.R283M 0.40 deleterious(0) possibly_damaging(0.886) TCGA-73-4670-01 7 143510177 143510177 G A RP11-61L23.2 RNA 0.24 TCGA-73-4670-01 7 148851053 148851053 C T ZNF398 Missense_Mutation p.S14F 0.32 deleterious(0) possibly_damaging(0.48) TCGA-73-4670-01 7 149489534 149489534 G T SSPO RNA 0.52 TCGA-73-4670-01 7 149559129 149559129 A T ZNF862 Missense_Mutation p.E960D 0.35 tolerated(0.12) benign(0.025) TCGA-73-4670-01 7 150498674 150498674 G T TMEM176A Missense_Mutation p.E12D 0.28 tolerated(0.32) possibly_damaging(0.526) TCGA-73-4670-01 7 150731915 150731915 A T ABCB8 Missense_Mutation p.Q255L 0.32 deleterious(0.01) possibly_damaging(0.614) TCGA-73-4670-01 7 154172096 154172096 A T DPP6 Missense_Mutation p.H144L 0.32 deleterious(0.03) probably_damaging(0.966) TCGA-73-4670-01 7 16341066 16341066 G A ISPD Missense_Mutation p.A272V 0.20 deleterious(0.01) possibly_damaging(0.668) TCGA-73-4670-01 7 20762799 20762799 G T ABCB5 Missense_Mutation p.G861V 0.42 deleterious(0) probably_damaging(1) TCGA-73-4670-01 7 37780619 37780619 G T GPR141 Silent p.V208V 0.33 TCGA-73-4670-01 7 4167083 4167083 A G SDK1 Silent p.T1298T 0.26 TCGA-73-4670-01 7 42004566 42004566 C A GLI3 Missense_Mutation p.G1369C 0.34 tolerated_low_confidence(0.13) benign(0.018) TCGA-73-4670-01 7 56140737 56140737 G A SUMF2 Missense_Mutation p.G110E 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-73-4670-01 7 73020022 73020022 G A MLXIPL Silent p.I299I 0.38 TCGA-73-4670-01 7 73668671 73668671 C A RFC2 Missense_Mutation p.A15S 0.40 tolerated_low_confidence(0.34) benign(0.001) TCGA-73-4670-01 7 88966215 88966215 A G ZNF804B Missense_Mutation p.I1307V 0.33 tolerated(0.27) benign(0.098) TCGA-73-4670-01 7 901072 901072 G T SUN1 Missense_Mutation p.G612V 0.33 deleterious(0) probably_damaging(0.998) TCGA-73-4670-01 7 91603226 91603226 A G AKAP9 Missense_Mutation p.M84V 0.26 benign(0.001) TCGA-73-4670-01 7 92763391 92763391 T C SAMD9L Missense_Mutation p.R632G 0.39 tolerated(0.05) benign(0.133) TCGA-73-4670-01 7 93108688 93108688 C A CALCR Missense_Mutation p.Q79H 0.32 tolerated(0.39) benign(0.022) TCGA-73-4670-01 7 96339117 96339117 G C SHFM1 5'UTR 0.38 TCGA-73-4670-01 7 98257786 98257786 C G NPTX2 Missense_Mutation p.R381G 0.44 deleterious(0) probably_damaging(0.939) TCGA-73-4670-01 7 99802368 99802368 A G STAG3 Missense_Mutation p.Q974R 0.33 tolerated(0.06) benign(0.006) TCGA-73-4670-01 8 101629909 101629909 G C SNX31 Missense_Mutation p.P124R 0.55 deleterious(0.02) probably_damaging(0.98) TCGA-73-4670-01 8 113303803 113303803 A T CSMD3 Missense_Mutation p.F2970L 0.11 tolerated(1) possibly_damaging(0.796) TCGA-73-4670-01 8 113303804 113303804 A T CSMD3 Missense_Mutation p.F2970Y 0.11 tolerated(0.07) possibly_damaging(0.811) TCGA-73-4670-01 8 113317142 113317142 C T CSMD3 Missense_Mutation p.V2692I 0.51 tolerated(0.19) benign(0.041) TCGA-73-4670-01 8 121457313 121457313 G A MRPL13 Missense_Mutation p.P8S 0.13 tolerated(0.24) benign(0.002) TCGA-73-4670-01 8 133984064 133984064 G A TG Missense_Mutation p.D2001N 0.18 deleterious(0) probably_damaging(0.998) TCGA-73-4670-01 8 139635992 139635992 C A COL22A1 Missense_Mutation p.G1252C 0.29 unknown(0) TCGA-73-4670-01 8 145689869 145689869 G A CYHR1 Missense_Mutation p.P74S 0.11 tolerated(0.16) benign(0.057) TCGA-73-4670-01 8 21984809 21984809 T A HR Silent p.T382T 0.56 TCGA-73-4670-01 8 51363265 51363265 G T SNTG1 Silent p.V113V 0.25 TCGA-73-4670-01 8 53569771 53569771 T A RB1CC1 Missense_Mutation p.E873V 0.20 deleterious_low_confidence(0) possibly_damaging(0.556) TCGA-73-4670-01 8 59059080 59059080 G T FAM110B Silent p.T97T 0.34 TCGA-73-4670-01 8 64098921 64098921 T C YTHDF3 Missense_Mutation p.F117L 0.53 deleterious(0.03) probably_damaging(0.961) TCGA-73-4670-01 8 6735418 6735418 G T DEFB1 5'UTR 0.44 TCGA-73-4670-01 8 77620022 77620022 G T ZFHX4 Missense_Mutation p.Q944H 0.41 benign(0.387) TCGA-73-4670-01 8 87126054 87126054 G T ATP6V0D2 Nonsense_Mutation p.E83* 0.26 TCGA-73-4670-01 9 100133895 100133895 G T CCDC180 Missense_Mutation p.G1547C 0.74 tolerated(0.09) benign(0) TCGA-73-4670-01 9 119582987 119582987 C A ASTN2 Missense_Mutation p.G655C 0.52 deleterious(0) unknown(0) TCGA-73-4670-01 9 132404236 132404236 G T ASB6 Missense_Mutation p.Q15K 0.60 deleterious_low_confidence(0) benign(0.054) TCGA-73-4670-01 9 21206911 21206911 G A IFNA10 Silent p.P62P 0.55 TCGA-73-4670-01 9 33443783 33443783 G T AQP3 Silent p.L72L 0.39 TCGA-73-4670-01 9 36633175 36633175 T C MELK Missense_Mutation p.V271A 0.56 deleterious(0) benign(0.437) TCGA-73-4670-01 9 37126466 37126466 A T ZCCHC7 Missense_Mutation p.D46V 0.63 deleterious(0.01) benign(0.26) TCGA-73-4670-01 9 6506175 6506175 G A UHRF2 Missense_Mutation p.R802Q 0.26 deleterious(0) probably_damaging(0.945) TCGA-73-4670-01 9 87635209 87635209 G C NTRK2 Missense_Mutation p.S754T 0.48 deleterious(0) probably_damaging(0.972) TCGA-73-4670-01 9 94485906 94485906 C T ROR2 3'UTR 0.48 TCGA-73-4670-01 9 99083416 99083416 C T SLC35D2 3'UTR 0.58 TCGA-73-4670-01 X 100662855 100662855 C A GLA Missense_Mutation p.A13S 0.12 tolerated(0.28) benign(0.005) TCGA-73-4670-01 X 102003951 102003951 G T BHLHB9 Missense_Mutation p.A10S 0.16 tolerated(0.61) benign(0.053) TCGA-73-4670-01 X 102864703 102864703 C A TCEAL3 3'UTR 0.13 TCGA-73-4670-01 X 104463939 104463939 C A TEX13A Missense_Mutation p.D313Y 0.40 deleterious(0.04) benign(0) TCGA-73-4670-01 X 106882522 106882522 T A PRPS1 Intron 0.40 TCGA-73-4670-01 X 111090456 111090456 A G TRPC5 Missense_Mutation p.L529P 0.37 deleterious(0) probably_damaging(0.998) TCGA-73-4670-01 X 11187744 11187744 G T ARHGAP6 Missense_Mutation p.H564N 0.58 deleterious(0) probably_damaging(0.994) TCGA-73-4670-01 X 118221891 118221891 G T KIAA1210 Missense_Mutation p.S1101Y 0.21 deleterious(0) possibly_damaging(0.858) TCGA-73-4670-01 X 118893473 118893473 G T SOWAHD Missense_Mutation p.R281S 0.20 tolerated(0.48) benign(0.01) TCGA-73-4670-01 X 119388004 119388004 C A ZBTB33 Missense_Mutation p.P245H 0.22 deleterious(0) possibly_damaging(0.784) TCGA-73-4670-01 X 122765637 122765637 T A THOC2 Nonsense_Mutation p.K795* 0.18 TCGA-73-4670-01 X 123518550 123518550 G T TENM1 Silent p.V2077V 0.17 TCGA-73-4670-01 X 123538980 123538980 G A TENM1 Silent p.N1764N 0.04 TCGA-73-4670-01 X 123631016 123631016 C A TENM1 Missense_Mutation p.C1182F 0.17 deleterious(0) probably_damaging(0.999) TCGA-73-4670-01 X 123805609 123805609 C - TENM1 Frame_Shift_Del p.N365Tfs*33 0.19 TCGA-73-4670-01 X 128692825 128692825 G T OCRL Missense_Mutation p.R190L 0.15 tolerated(0.08) possibly_damaging(0.581) TCGA-73-4670-01 X 130416668 130416668 C G IGSF1 Silent p.V332V 0.12 TCGA-73-4670-01 X 130678554 130678554 G T OR13H1 Silent p.G169G 0.31 TCGA-73-4670-01 X 132458435 132458435 T C GPC4 Missense_Mutation p.Y150C 0.18 deleterious(0) probably_damaging(0.999) TCGA-73-4670-01 X 134186196 134186196 G T FAM127B 5'UTR 0.42 TCGA-73-4670-01 X 135426945 135426945 G T GPR112 Missense_Mutation p.M360I 0.33 tolerated(1) benign(0.001) TCGA-73-4670-01 X 135618294 135618294 A T VGLL1 Missense_Mutation p.S39C 0.12 deleterious(0) probably_damaging(0.999) TCGA-73-4670-01 X 135827428 135827428 G T ARHGEF6 Missense_Mutation p.A138E 0.36 tolerated_low_confidence(0.53) benign(0.001) TCGA-73-4670-01 X 138708396 138708396 C A MCF2 Nonsense_Mutation p.E275* 0.16 TCGA-73-4670-01 X 142121947 142121947 C A SPANXN4 Missense_Mutation p.P72H 0.44 deleterious_low_confidence(0.03) benign(0.195) TCGA-73-4670-01 X 150154608 150154608 G T HMGB3 Nonsense_Mutation p.G79* 0.43 TCGA-73-4670-01 X 151092809 151092809 G A MAGEA4 Missense_Mutation p.E225K 0.22 tolerated(0.12) benign(0.15) TCGA-73-4670-01 X 151821480 151821480 C T GABRQ Silent p.A545A 0.34 TCGA-73-4670-01 X 151869629 151869629 G A MAGEA6 Missense_Mutation p.A107T 0.34 deleterious(0.05) benign(0.071) TCGA-73-4670-01 X 152826336 152826336 C A ATP2B3 Missense_Mutation p.F1014L 0.19 tolerated(0.14) benign(0.253) TCGA-73-4670-01 X 153039400 153039400 C A PLXNB3 Silent p.V1145V 0.22 TCGA-73-4670-01 X 153171598 153171598 T G AVPR2 Missense_Mutation p.V213G 0.22 deleterious(0) probably_damaging(0.998) TCGA-73-4670-01 X 153216379 153216379 T G HCFC1 Missense_Mutation p.K1863T 0.14 deleterious(0) probably_damaging(0.954) TCGA-73-4670-01 X 153217516 153217516 G T HCFC1 Missense_Mutation p.A1679D 0.33 tolerated_low_confidence(0.35) benign(0.152) TCGA-73-4670-01 X 153278822 153278822 G T IRAK1 Silent p.A534A 0.34 TCGA-73-4670-01 X 153664276 153664276 C A ATP6AP1 3'UTR 0.33 TCGA-73-4670-01 X 154158632 154158632 G T F8 Missense_Mutation p.P1145T 0.19 tolerated(0.07) benign(0.149) TCGA-73-4670-01 X 154467159 154467159 C T VBP1 3'UTR 0.25 TCGA-73-4670-01 X 16635339 16635339 G T CTPS2 Missense_Mutation p.Q494K 0.21 tolerated(0.77) benign(0) TCGA-73-4670-01 X 16635352 16635352 G C CTPS2 Missense_Mutation p.I489M 0.21 deleterious(0.01) benign(0.222) TCGA-73-4670-01 X 18230695 18230695 T C BEND2 Missense_Mutation p.Y161C 0.64 tolerated(0.19) benign(0) TCGA-73-4670-01 X 23704431 23704431 G T PRDX4 Missense_Mutation p.K265N 0.16 deleterious(0.02) benign(0.069) TCGA-73-4670-01 X 3242878 3242878 G - MXRA5 Frame_Shift_Del p.P283Lfs*2 0.33 TCGA-73-4670-01 X 40498351 40498351 T C CXorf38 Silent p.K127K 0.55 TCGA-73-4670-01 X 48399786 48399786 C A TBC1D25 Silent p.L63L 0.23 TCGA-73-4670-01 X 48771797 48771797 G C PIM2 Missense_Mutation p.A216G 0.21 tolerated(1) benign(0.036) TCGA-73-4670-01 X 54280510 54280510 T A WNK3 Splice_Site p.X751_splice 0.25 TCGA-73-4670-01 X 57934538 57934538 C A ZXDA Nonsense_Mutation p.G773* 0.21 TCGA-73-4670-01 X 65474875 65474875 A - HEPH Splice_Site p.X909_splice 0.11 TCGA-73-4670-01 X 67733217 67733217 C A YIPF6 Missense_Mutation p.P79T 0.12 deleterious(0) probably_damaging(1) TCGA-73-4670-01 X 67938321 67938321 C G STARD8 Missense_Mutation p.S522C 0.11 deleterious(0) possibly_damaging(0.669) TCGA-73-4670-01 X 67938390 67938390 G A STARD8 Missense_Mutation p.G545E 0.24 tolerated(0.18) benign(0.046) TCGA-73-4670-01 X 68059566 68059566 C A EFNB1 Missense_Mutation p.R156S 0.23 deleterious(0.01) possibly_damaging(0.703) TCGA-73-4670-01 X 77284869 77284869 G T ATP7A Missense_Mutation p.M1013I 0.26 deleterious(0) probably_damaging(0.998) TCGA-73-4670-01 X 79975054 79975054 G T BRWD3 Missense_Mutation p.L660M 0.25 tolerated(0.11) possibly_damaging(0.781) TCGA-73-4670-01 X 83695583 83695583 T C HDX Missense_Mutation p.N421S 0.11 tolerated(0.25) benign(0.005) TCGA-73-4670-01 X 84502438 84502438 G A ZNF711 Intron 0.62 TCGA-73-4670-01 X 84562228 84562228 G T POF1B Missense_Mutation p.Q369K 0.17 deleterious(0) probably_damaging(0.99) TCGA-73-4670-01 X 91133670 91133670 G T PCDH11X Missense_Mutation p.V811F 0.13 deleterious(0.01) benign(0.329) TCGA-73-4670-01 X 91134128 91134128 C A PCDH11X Silent p.I963I 0.29 TCGA-73-4670-01 X 91134129 91134129 C A PCDH11X Missense_Mutation p.Q964K 0.28 deleterious(0) probably_damaging(0.999) TCGA-73-4670-01 X 99920543 99920543 C A SRPX2 Silent p.R224R 0.14 TCGA-73-4670-01 X 99941666 99941666 A G SYTL4 Intron 0.26 TCGA-73-4670-01 X 99956257 99956257 C A SYTL4 Missense_Mutation p.G132V 0.16 deleterious(0) probably_damaging(1) TCGA-73-4675-01 10 69934146 69934146 C G MYPN Missense_Mutation p.S766C 0.54 deleterious(0.02) possibly_damaging(0.503) TCGA-73-4675-01 11 102999641 102999641 G T DYNC2H1 Silent p.V620V 0.33 TCGA-73-4675-01 11 124134990 124134990 C A OR8G5 Missense_Mutation p.L90M 0.51 deleterious(0) probably_damaging(0.999) TCGA-73-4675-01 11 124735451 124735451 C T ROBO3 5'UTR 0.33 TCGA-73-4675-01 11 125301293 125301293 G C PKNOX2 3'UTR 0.08 TCGA-73-4675-01 11 125301295 125301295 A T PKNOX2 3'UTR 0.08 TCGA-73-4675-01 11 125647222 125647222 G C PATE2 3'UTR 0.50 TCGA-73-4675-01 11 1263012 1263012 G A MUC5B Silent p.T1634T 0.19 TCGA-73-4675-01 11 1269042 1269042 C T MUC5B Silent p.C3644C 0.36 TCGA-73-4675-01 11 133790096 133790096 G C IGSF9B Missense_Mutation p.P1175R 0.16 deleterious_low_confidence(0) possibly_damaging(0.732) TCGA-73-4675-01 11 33373334 33373334 G C HIPK3 Silent p.V996V 0.42 TCGA-73-4675-01 11 47283259 47283259 G A NR1H3 Silent p.L290L 0.44 TCGA-73-4675-01 11 62416429 62416429 G A INTS5 Missense_Mutation p.H375Y 0.21 tolerated(0.14) possibly_damaging(0.642) TCGA-73-4675-01 11 68682465 68682465 A G IGHMBP2 Missense_Mutation p.I296V 0.33 tolerated(0.26) benign(0.268) TCGA-73-4675-01 11 7949674 7949674 C T OR10A6 Missense_Mutation p.C179Y 0.51 deleterious(0) probably_damaging(0.998) TCGA-73-4675-01 12 46231201 46231201 G A ARID2 Splice_Site p.X374_splice 0.38 TCGA-73-4675-01 14 106725479 106725479 C G IGHV3-23 Missense_Mutation p.E25Q 0.04 deleterious_low_confidence(0.02) benign(0.417) TCGA-73-4675-01 14 24839714 24839714 G A NFATC4 Silent p.K433K 0.17 TCGA-73-4675-01 14 24839725 24839725 G A NFATC4 Missense_Mutation p.G437D 0.18 deleterious(0.03) possibly_damaging(0.586) TCGA-73-4675-01 14 45431925 45431925 C G FAM179B Missense_Mutation p.Q101E 0.40 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-73-4675-01 15 68125572 68125572 A G SKOR1 Missense_Mutation p.Y830C 0.44 deleterious_low_confidence(0.03) possibly_damaging(0.878) TCGA-73-4675-01 15 86286756 86286756 C G AKAP13 Missense_Mutation p.P2702A 0.07 deleterious(0.05) possibly_damaging(0.481) TCGA-73-4675-01 16 57073747 57073747 G - NLRC5 Frame_Shift_Del p.Q955Rfs*20 0.39 TCGA-73-4675-01 16 68894367 68894367 A - TANGO6 Frame_Shift_Del p.G226Vfs*15 0.38 TCGA-73-4675-01 16 85704643 85704643 G A GSE1 Missense_Mutation p.R1153Q 0.39 tolerated(0.06) benign(0.339) TCGA-73-4675-01 17 28511752 28511752 C T NSRP1 Missense_Mutation p.A246V 0.35 deleterious(0.01) benign(0.157) TCGA-73-4675-01 17 42254909 42254909 T C ASB16 Intron 0.17 TCGA-73-4675-01 17 61958402 61958402 G A GH2 Missense_Mutation p.T93M 0.35 tolerated(0.05) possibly_damaging(0.832) TCGA-73-4675-01 17 61972557 61972557 C A CSH1 Missense_Mutation p.R160L 0.34 tolerated(0.06) benign(0.003) TCGA-73-4675-01 17 6328905 6328905 C T AIPL1 Missense_Mutation p.A344T 0.33 tolerated_low_confidence(0.23) unknown(0) TCGA-73-4675-01 17 73566508 73566508 C T LLGL2 Nonsense_Mutation p.Q652* 0.26 TCGA-73-4675-01 18 2575004 2575004 T C NDC80 Missense_Mutation p.F40L 0.14 tolerated(0.28) benign(0.011) TCGA-73-4675-01 18 40854284 40854284 C - SYT4 Frame_Shift_Del p.C37Sfs*31 0.26 TCGA-73-4675-01 19 15338342 15338342 T C EPHX3 Missense_Mutation p.H330R 0.42 tolerated(0.3) benign(0.012) TCGA-73-4675-01 19 37853120 37853120 T G HKR1 Missense_Mutation p.S141R 0.36 tolerated(0.21) possibly_damaging(0.731) TCGA-73-4675-01 19 43382252 43382252 T C PSG1 Silent p.S81S 0.39 TCGA-73-4675-01 19 51165489 51165489 C T SHANK1 Silent p.S2073S 0.10 TCGA-73-4675-01 19 51330321 51330321 G A KLK15 Silent p.Y98Y 0.38 TCGA-73-4675-01 19 52519939 52519939 A C ZNF614 Silent p.A304A 0.10 TCGA-73-4675-01 19 57327010 57327010 T A PEG3 Nonsense_Mutation p.K934* 0.33 TCGA-73-4675-01 19 8191468 8191468 C A FBN3 Missense_Mutation p.W813L 0.30 deleterious(0) possibly_damaging(0.859) TCGA-73-4675-01 19 9073701 9073701 G T MUC16 Nonsense_Mutation p.S4582* 0.24 TCGA-73-4675-01 1 10292474 10292474 A G KIF1B Missense_Mutation p.M30V 0.45 deleterious(0.03) possibly_damaging(0.749) TCGA-73-4675-01 1 155874278 155874283 TGGCTG - RIT1 In_Frame_Del p.T100_A101del 0.61 TCGA-73-4675-01 1 158326737 158326737 C A CD1E 3'UTR 0.24 TCGA-73-4675-01 1 161599819 161599819 A G FCGR3B Missense_Mutation p.L59P 0.36 tolerated(0.29) benign(0.002) TCGA-73-4675-01 1 182569399 182569399 C A RGS16 3'UTR 0.21 TCGA-73-4675-01 1 183486889 183486889 G A SMG7 Silent p.P82P 0.11 TCGA-73-4675-01 1 184690453 184690454 - C EDEM3 Frame_Shift_Ins p.D308Rfs*2 0.41 TCGA-73-4675-01 1 186329117 186329117 A C TPR Silent p.A401A 0.31 TCGA-73-4675-01 1 201777624 201777624 G T NAV1 Silent p.S1308S 0.31 TCGA-73-4675-01 1 222801788 222801788 A T MIA3 Missense_Mutation p.E409V 0.34 deleterious(0) benign(0.382) TCGA-73-4675-01 1 241929587 241929587 T C WDR64 Missense_Mutation p.I662T 0.26 deleterious(0) possibly_damaging(0.833) TCGA-73-4675-01 1 45471493 45471493 C A HECTD3 Missense_Mutation p.K636N 0.36 deleterious(0.01) benign(0.243) TCGA-73-4675-01 1 50941262 50941262 G A FAF1 Silent p.P581P 0.45 TCGA-73-4675-01 20 31651454 31651454 G A BPIFB3 Missense_Mutation p.V209M 0.23 tolerated(0.18) benign(0.15) TCGA-73-4675-01 21 46313397 46313397 G A ITGB2 Silent p.Y382Y 0.19 TCGA-73-4675-01 22 50316928 50316928 G A CRELD2 Silent p.Q294Q 0.20 TCGA-73-4675-01 2 131519728 131519728 C A AMER3 Missense_Mutation p.A28D 0.27 tolerated(0.11) benign(0.114) TCGA-73-4675-01 2 179248905 179248905 T C OSBPL6 Splice_Site p.X696_splice 0.08 TCGA-73-4675-01 2 179640620 179640620 G T TTN Missense_Mutation p.P1991T 0.09 TCGA-73-4675-01 2 187540632 187540632 A T ITGAV Missense_Mutation p.E969V 0.36 tolerated(0.18) possibly_damaging(0.493) TCGA-73-4675-01 2 20135266 20135266 G A WDR35 Missense_Mutation p.A849V 0.23 tolerated(1) probably_damaging(0.993) TCGA-73-4675-01 2 26607932 26607932 G C EPT1 Missense_Mutation p.W279C 0.10 tolerated(0.17) benign(0.21) TCGA-73-4675-01 2 27324165 27324165 G T CGREF1 Missense_Mutation p.Q312K 0.33 deleterious(0) possibly_damaging(0.76) TCGA-73-4675-01 2 27600974 27600985 GGGCCCTGGGGC - ZNF513 In_Frame_Del p.P352_P355del 0.27 TCGA-73-4675-01 2 3627799 3627799 G C RPS7 Silent p.R152R 0.32 TCGA-73-4675-01 2 89247276 89247276 C T IGKV1-5 Missense_Mutation p.A7T 0.35 tolerated(0.53) benign(0.007) TCGA-73-4675-01 3 153839829 153839829 T - ARHGEF26 Frame_Shift_Del p.L17Cfs*31 0.28 TCGA-73-4675-01 3 168833635 168833635 T A MECOM Silent p.S552S 0.24 TCGA-73-4675-01 3 183884764 183884764 G T DVL3 Splice_Site p.X400_splice 0.16 TCGA-73-4675-01 3 36527665 36527665 G T STAC Missense_Mutation p.R204L 0.18 deleterious(0) possibly_damaging(0.824) TCGA-73-4675-01 3 49167754 49167754 G A LAMB2 Missense_Mutation p.H379Y 0.50 deleterious(0.02) possibly_damaging(0.597) TCGA-73-4675-01 3 49170269 49170269 C A LAMB2 Missense_Mutation p.G11V 0.51 deleterious_low_confidence(0.02) possibly_damaging(0.617) TCGA-73-4675-01 4 147227081 147227081 T C SLC10A7 Silent p.G184G 0.14 TCGA-73-4675-01 4 162577480 162577480 A G FSTL5 Silent p.N298N 0.40 TCGA-73-4675-01 4 6380272 6380272 C A PPP2R2C Nonsense_Mutation p.E66* 0.46 TCGA-73-4675-01 5 111519749 111519749 T A EPB41L4A Missense_Mutation p.D529V 0.31 tolerated(0.11) possibly_damaging(0.721) TCGA-73-4675-01 5 138861279 138861279 G C TMEM173 Missense_Mutation p.S4C 0.26 deleterious(0.02) probably_damaging(0.922) TCGA-73-4675-01 5 40937762 40937762 G T C7 Silent p.L179L 0.62 TCGA-73-4675-01 6 155114064 155114065 - A SCAF8 Frame_Shift_Ins p.T144Nfs*33 0.36 TCGA-73-4675-01 6 85446869 85446869 C T TBX18 Missense_Mutation p.R453K 0.44 deleterious(0.05) probably_damaging(0.931) TCGA-73-4675-01 7 122768953 122768953 A C SLC13A1 Missense_Mutation p.L360R 0.27 deleterious(0) probably_damaging(0.998) TCGA-73-4675-01 7 23751905 23751905 G T STK31 Missense_Mutation p.Q50H 0.29 deleterious(0) probably_damaging(0.998) TCGA-73-4675-01 8 124659239 124659239 T C KLHL38 Missense_Mutation p.R456G 0.32 deleterious(0.03) benign(0.007) TCGA-73-4675-01 8 125498172 125498172 G A RNF139 Silent p.L94L 0.29 TCGA-73-4675-01 8 132051638 132051638 C T ADCY8 Silent p.A314A 0.26 TCGA-73-4675-01 8 139151255 139151255 A G FAM135B Missense_Mutation p.F1292S 0.31 deleterious(0) probably_damaging(0.986) TCGA-73-4675-01 8 23429006 23429006 T C SLC25A37 Missense_Mutation p.Y219H 0.04 deleterious(0) probably_damaging(1) TCGA-73-4675-01 9 125148924 125148924 C T AL162424.1 Missense_Mutation p.R2H 0.09 possibly_damaging(0.711) TCGA-73-4675-01 9 135917627 135917627 G A GTF3C5 Missense_Mutation p.A103T 0.22 tolerated(0.35) benign(0.003) TCGA-73-4675-01 X 43817761 43817761 T C NDP Missense_Mutation p.Y44C 0.08 deleterious(0) probably_damaging(0.998) TCGA-73-4676-01 10 123324018 123324020 TTG - FGFR2 In_Frame_Del p.N150del 0.23 TCGA-73-4676-01 10 124896850 124896850 G A HMX3 Missense_Mutation p.R226H 0.44 deleterious(0) probably_damaging(0.995) TCGA-73-4676-01 10 35320243 35320243 C G CUL2 Missense_Mutation p.M476I 0.41 deleterious(0.01) benign(0.194) TCGA-73-4676-01 10 70645813 70645813 G A STOX1 Missense_Mutation p.G754D 0.56 deleterious(0.03) benign(0.132) TCGA-73-4676-01 11 113288792 113288792 A G DRD2 Missense_Mutation p.C118R 0.23 deleterious(0) probably_damaging(0.989) TCGA-73-4676-01 11 113813798 113813798 C A HTR3B Missense_Mutation p.P264Q 0.34 deleterious(0) probably_damaging(1) TCGA-73-4676-01 11 116633839 116633839 G - BUD13 Frame_Shift_Del p.R156Vfs*277 0.24 TCGA-73-4676-01 11 123810321 123810321 C A OR4D5 5'UTR 0.29 TCGA-73-4676-01 11 57947393 57947393 G T OR9Q1 Silent p.R159R 0.29 TCGA-73-4676-01 11 58190389 58190389 T A OR5B2 Missense_Mutation p.M116L 0.29 deleterious_low_confidence(0) benign(0.373) TCGA-73-4676-01 11 65652447 65652447 C A FIBP Nonsense_Mutation p.G267* 0.21 TCGA-73-4676-01 11 66113531 66113531 G T B3GNT1 Silent p.R413R 0.25 TCGA-73-4676-01 11 71146414 71146414 C T DHCR7 3'UTR 0.07 TCGA-73-4676-01 11 9215164 9215164 C G DENND5A Missense_Mutation p.Q338H 0.43 deleterious(0) probably_damaging(0.999) TCGA-73-4676-01 12 62996808 62996808 G C C12orf61 Missense_Mutation p.P104R 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.904) TCGA-73-4676-01 12 70794043 70794043 A G KCNMB4 Missense_Mutation p.M131V 0.42 tolerated(0.14) benign(0.01) TCGA-73-4676-01 14 19553772 19553772 C T POTEG Missense_Mutation p.P119L 0.07 deleterious(0.03) benign(0.007) TCGA-73-4676-01 14 21109020 21109020 C A OR6S1 Silent p.V277V 0.42 TCGA-73-4676-01 14 36159051 36159051 G A RALGAPA1 Nonsense_Mutation p.R809* 0.60 TCGA-73-4676-01 14 47600918 47600918 T A MDGA2 Silent p.T308T 0.63 TCGA-73-4676-01 14 59113754 59113755 CC A DACT1 Frame_Shift_Del p.P805Tfs*26 0.35 TCGA-73-4676-01 14 64449507 64449507 C T SYNE2 Nonsense_Mutation p.Q666* 0.50 TCGA-73-4676-01 14 95578531 95578531 G A DICER1 Silent p.C698C 0.05 TCGA-73-4676-01 15 43069415 43069415 T C TTBK2 Missense_Mutation p.H408R 0.59 tolerated(0.38) benign(0.206) TCGA-73-4676-01 15 89417108 89417108 A G ACAN Missense_Mutation p.R2457G 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-73-4676-01 16 53358590 53358590 A T CHD9 Missense_Mutation p.D2810V 0.45 unknown(0) TCGA-73-4676-01 16 77775669 77775669 C G NUDT7 Missense_Mutation p.P180R 0.40 tolerated(0.07) probably_damaging(0.963) TCGA-73-4676-01 16 89775334 89775334 G A VPS9D1 Missense_Mutation p.A543V 0.55 tolerated(0.16) benign(0.289) TCGA-73-4676-01 17 28512755 28512755 G A NSRP1 3'UTR 0.06 TCGA-73-4676-01 17 29676209 29676209 A - NF1 Frame_Shift_Del p.N2421Tfs*11 0.21 TCGA-73-4676-01 17 38787102 38787102 G A SMARCE1 Silent p.R297R 0.61 TCGA-73-4676-01 17 46940221 46940221 A G CALCOCO2 Missense_Mutation p.I423V 0.74 tolerated(0.83) benign(0.001) TCGA-73-4676-01 17 72846773 72846773 A G GRIN2C Missense_Mutation p.V416A 0.49 deleterious(0.01) probably_damaging(0.919) TCGA-73-4676-01 17 7578403 7578403 C A TP53 Missense_Mutation p.C176F 0.66 deleterious(0) probably_damaging(0.993) TCGA-73-4676-01 19 10602335 10602335 G A KEAP1 Missense_Mutation p.R415C 0.44 deleterious(0) possibly_damaging(0.907) TCGA-73-4676-01 19 9237500 9237500 G C OR7G3 Missense_Mutation p.L43V 0.43 deleterious(0.01) benign(0.133) TCGA-73-4676-01 1 110019462 110019462 C A SYPL2 Missense_Mutation p.L107I 0.15 deleterious(0) probably_damaging(0.998) TCGA-73-4676-01 1 11333871 11333871 C A UBIAD1 Missense_Mutation p.H95N 0.42 deleterious(0) probably_damaging(0.952) TCGA-73-4676-01 1 150259060 150259060 A T C1orf51 Missense_Mutation p.L284F 0.42 deleterious(0.01) probably_damaging(0.925) TCGA-73-4676-01 1 152785211 152785211 A G LCE1B Missense_Mutation p.S97G 0.53 tolerated_low_confidence(0.18) unknown(0) TCGA-73-4676-01 1 156255080 156255080 C G TMEM79 Missense_Mutation p.S21R 0.44 deleterious_low_confidence(0.01) benign(0.203) TCGA-73-4676-01 1 156628465 156628465 C A BCAN Silent p.I856I 0.35 TCGA-73-4676-01 1 156628466 156628466 C A BCAN Silent p.R857R 0.34 TCGA-73-4676-01 1 156946817 156946817 C T ARHGEF11 Silent p.Q180Q 0.49 TCGA-73-4676-01 1 176738760 176738760 A G PAPPA2 Silent p.T1447T 0.40 TCGA-73-4676-01 1 19501491 19501491 G A UBR4 Missense_Mutation p.S937F 0.51 possibly_damaging(0.852) TCGA-73-4676-01 1 237787114 237787114 C A RYR2 Missense_Mutation p.P1989Q 0.47 possibly_damaging(0.541) TCGA-73-4676-01 1 237791169 237791169 G A RYR2 Missense_Mutation p.D2077N 0.56 benign(0.084) TCGA-73-4676-01 1 238053780 238053780 A T ZP4 Silent p.P52P 0.23 TCGA-73-4676-01 1 248737471 248737471 G A OR2T34 Silent p.D196D 0.34 TCGA-73-4676-01 1 41101649 41101649 T C RIMS3 Missense_Mutation p.T100A 0.11 tolerated_low_confidence(0.06) benign(0.086) TCGA-73-4676-01 1 61869785 61869785 A T NFIA Missense_Mutation p.H407L 0.17 tolerated(0.29) benign(0.089) TCGA-73-4676-01 1 65851413 65851413 T A DNAJC6 Nonsense_Mutation p.C273* 0.12 TCGA-73-4676-01 1 65851414 65851414 G T DNAJC6 Missense_Mutation p.D274Y 0.12 deleterious(0) probably_damaging(0.993) TCGA-73-4676-01 1 75037335 75037335 G A C1orf173 Silent p.A1353A 0.44 TCGA-73-4676-01 1 85487754 85487754 T G MCOLN3 Missense_Mutation p.K440T 0.16 deleterious(0) probably_damaging(0.997) TCGA-73-4676-01 20 4705263 4705263 T C PRND Silent p.S22S 0.49 TCGA-73-4676-01 20 58514506 58514506 G A PPP1R3D Missense_Mutation p.P161S 0.21 tolerated(0.09) benign(0.029) TCGA-73-4676-01 20 60907678 60907678 C A LAMA5 Silent p.V1126V 0.60 TCGA-73-4676-01 21 38997456 38997456 G A KCNJ6 3'UTR 0.26 TCGA-73-4676-01 22 18073121 18073121 G A SLC25A18 3'UTR 0.55 TCGA-73-4676-01 22 26892780 26892780 C T TFIP11 Missense_Mutation p.M504I 0.12 tolerated(0.05) benign(0.359) TCGA-73-4676-01 22 50718982 50718982 T - PLXNB2 Frame_Shift_Del p.T1371Rfs*18 0.29 TCGA-73-4676-01 22 50961504 50961504 C T NCAPH2 Missense_Mutation p.P530L 0.57 tolerated(0.26) benign(0.149) TCGA-73-4676-01 2 105883921 105883921 T C TGFBRAP1 Silent p.P834P 0.45 TCGA-73-4676-01 2 215862422 215862422 A T ABCA12 Missense_Mutation p.H1097Q 0.59 deleterious(0.01) possibly_damaging(0.493) TCGA-73-4676-01 2 224462881 224462881 T G SCG2 Missense_Mutation p.K374Q 0.50 tolerated(0.16) possibly_damaging(0.802) TCGA-73-4676-01 2 234394527 234394527 C T USP40 Silent p.G1109G 0.80 TCGA-73-4676-01 2 24432687 24432687 C T ITSN2 Silent p.T1491T 0.26 TCGA-73-4676-01 2 37208593 37208593 G A HEATR5B 3'UTR 0.25 TCGA-73-4676-01 2 42552612 42552612 T C EML4 Silent p.H720H 0.21 TCGA-73-4676-01 2 46411986 46411986 G T PRKCE Missense_Mutation p.G727V 0.35 deleterious(0) probably_damaging(0.971) TCGA-73-4676-01 2 79314689 79314689 A G REG1B Missense_Mutation p.L17P 0.24 deleterious(0.03) possibly_damaging(0.766) TCGA-73-4676-01 2 89987068 89987068 A G IGKV2D-29 Missense_Mutation p.I117V 0.32 tolerated(0.44) benign(0.003) TCGA-73-4676-01 2 95715324 95715324 A G MAL Splice_Site p.X88_splice 0.38 TCGA-73-4676-01 3 47158225 47158225 G A SETD2 Nonsense_Mutation p.R1492* 0.40 TCGA-73-4676-01 4 101953470 101953470 C A PPP3CA Missense_Mutation p.M431I 0.42 tolerated(0.14) possibly_damaging(0.867) TCGA-73-4676-01 4 114209548 114209548 G T ANK2 Missense_Mutation p.G728V 0.48 probably_damaging(1) TCGA-73-4676-01 4 164247323 164247323 A C NPY1R Missense_Mutation p.I128M 0.15 deleterious(0) probably_damaging(0.976) TCGA-73-4676-01 4 165962548 165962548 G T TRIM60 Missense_Mutation p.D442Y 0.52 deleterious(0.04) possibly_damaging(0.549) TCGA-73-4676-01 4 86491836 86491836 C T ARHGAP24 Missense_Mutation p.L48F 0.48 deleterious(0) probably_damaging(0.97) TCGA-73-4676-01 5 107700656 107700656 T C FBXL17 Missense_Mutation p.Q386R 0.40 tolerated(0.21) benign(0.056) TCGA-73-4676-01 5 112228539 112228539 G A ZRSR1 Silent p.E401E 0.35 TCGA-73-4676-01 5 144977 144977 T C PLEKHG4B Missense_Mutation p.V260A 0.29 deleterious(0) probably_damaging(0.917) TCGA-73-4676-01 5 35670182 35670182 G T SPEF2 Missense_Mutation p.M459I 0.27 deleterious(0.03) probably_damaging(0.914) TCGA-73-4676-01 6 161162365 161162365 G T PLG Missense_Mutation p.V681L 0.57 deleterious(0) possibly_damaging(0.712) TCGA-73-4676-01 6 28253402 28253402 G T PGBD1 Missense_Mutation p.Q157H 0.42 deleterious_low_confidence(0.03) benign(0.007) TCGA-73-4676-01 6 34802533 34802533 C T UHRF1BP1 Silent p.L188L 0.45 TCGA-73-4676-01 6 44250206 44250206 C G TCTE1 Missense_Mutation p.D313H 0.55 deleterious(0) probably_damaging(0.999) TCGA-73-4676-01 6 84862734 84862734 T A KIAA1009 Missense_Mutation p.K1053N 0.46 deleterious(0) possibly_damaging(0.888) TCGA-73-4676-01 7 101266291 101266291 G T MYL10 Missense_Mutation p.T112N 0.33 deleterious(0) probably_damaging(0.985) TCGA-73-4676-01 7 121942893 121942893 C T FEZF1 Silent p.P343P 0.28 TCGA-73-4676-01 7 138554409 138554409 T C KIAA1549 Silent p.V1550V 0.22 TCGA-73-4676-01 7 142605736 142605736 A G TRPV5 Silent p.L712L 0.37 TCGA-73-4676-01 7 142659420 142659420 T A KEL 5'UTR 0.53 TCGA-73-4676-01 8 113347698 113347698 C A CSMD3 Missense_Mutation p.G2342V 0.46 deleterious(0) probably_damaging(0.997) TCGA-73-4676-01 8 113347699 113347699 C T CSMD3 Missense_Mutation p.G2342R 0.41 deleterious(0.01) probably_damaging(0.997) TCGA-73-4676-01 8 117869548 117869549 TA - RAD21 Nonsense_Mutation p.Y215* 0.32 TCGA-73-4676-01 8 123964400 123964400 G T ZHX2 Missense_Mutation p.R217L 0.26 tolerated(0.28) benign(0.05) TCGA-73-4676-01 8 130764122 130764122 T C GSDMC Missense_Mutation p.H301R 0.29 tolerated(0.38) benign(0.002) TCGA-73-4676-01 8 27255117 27255117 G A PTK2B Missense_Mutation p.E6K 0.26 deleterious_low_confidence(0.01) benign(0.079) TCGA-73-4676-01 8 30890170 30890170 C T PURG Silent p.A43A 0.26 TCGA-73-4676-01 8 94747222 94747222 T A RBM12B Nonsense_Mutation p.R473* 0.36 TCGA-73-4676-01 8 95680478 95680478 G C ESRP1 Missense_Mutation p.Q411H 0.36 deleterious(0.01) benign(0.016) TCGA-73-4676-01 9 101068494 101068494 G A GABBR2 Missense_Mutation p.T713I 0.44 tolerated(0.39) probably_damaging(0.917) TCGA-73-4676-01 9 103207491 103207491 C T MSANTD3 Intron 0.38 TCGA-73-4676-01 9 14848694 14848694 A G FREM1 Silent p.D410D 0.51 TCGA-73-4676-01 9 17415873 17415873 A T CNTLN Missense_Mutation p.T962S 0.50 tolerated(0.48) benign(0.003) TCGA-73-4676-01 9 2056747 2056747 C T SMARCA2 Missense_Mutation p.R417W 0.46 possibly_damaging(0.689) TCGA-73-4676-01 X 118771105 118771105 C A SEPT6 Missense_Mutation p.V281F 0.38 deleterious(0) possibly_damaging(0.88) TCGA-73-4676-01 X 128877985 128877985 C T XPNPEP2 Missense_Mutation p.R58C 0.09 deleterious(0) probably_damaging(1) TCGA-73-4676-01 X 134990731 134990731 A T SAGE1 Missense_Mutation p.N466Y 0.55 tolerated(0.14) benign(0.007) TCGA-73-4676-01 X 135430519 135430519 T A GPR112 Missense_Mutation p.C1552S 0.60 tolerated(1) benign(0) TCGA-73-4676-01 X 142716785 142716785 G T SLITRK4 Missense_Mutation p.P714T 0.60 tolerated(0.42) benign(0.039) TCGA-73-4676-01 X 3239235 3239235 G A MXRA5 Silent p.S1497S 0.61 TCGA-73-4676-01 X 32613910 32613910 T C DMD Silent p.G522G 0.57 TCGA-73-4676-01 X 53409548 53409548 G T SMC1A Missense_Mutation p.A1055D 0.17 deleterious(0.02) possibly_damaging(0.831) TCGA-73-4676-01 X 70443554 70443554 C T GJB1 5'UTR 0.17 TCGA-73-4677-01 10 104489099 104489099 C G SFXN2 Missense_Mutation p.T152R 0.30 tolerated(0.08) possibly_damaging(0.888) TCGA-73-4677-01 10 107012615 107012615 C A SORCS3 Missense_Mutation p.P1063H 0.22 tolerated(0.41) benign(0.001) TCGA-73-4677-01 10 120353661 120353661 C T PRLHR Missense_Mutation p.V366I 0.24 deleterious(0.02) possibly_damaging(0.778) TCGA-73-4677-01 10 121551579 121551579 G T INPP5F Intron 0.03 TCGA-73-4677-01 10 129905763 129905763 A G MKI67 Silent p.S1447S 0.26 TCGA-73-4677-01 10 135051638 135051638 G A VENTX Missense_Mutation p.A74T 0.20 tolerated(0.33) benign(0.005) TCGA-73-4677-01 10 23287106 23287106 C T ARMC3 Missense_Mutation p.P402L 0.16 tolerated(0.17) possibly_damaging(0.861) TCGA-73-4677-01 10 30915049 30915049 G T LYZL2 Missense_Mutation p.H141N 0.25 tolerated(0.35) possibly_damaging(0.794) TCGA-73-4677-01 10 37454083 37454083 G T ANKRD30A Missense_Mutation p.E632D 0.20 tolerated(0.26) possibly_damaging(0.636) TCGA-73-4677-01 10 43882166 43882166 G A HNRNPF Silent p.Y389Y 0.33 TCGA-73-4677-01 10 46961994 46961994 C A SYT15 Silent p.A414A 0.14 TCGA-73-4677-01 11 121174140 121174140 C T SC5D Missense_Mutation p.P19L 0.14 tolerated(0.16) probably_damaging(0.963) TCGA-73-4677-01 11 124310257 124310257 C A OR8B8 Missense_Mutation p.S242I 0.18 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-73-4677-01 11 128786413 128786413 C A KCNJ5 Missense_Mutation p.N349K 0.36 deleterious(0.03) possibly_damaging(0.728) TCGA-73-4677-01 11 3661436 3661436 A G ART5 Missense_Mutation p.W75R 0.22 deleterious(0) probably_damaging(1) TCGA-73-4677-01 11 4944840 4944840 C A OR51G1 Missense_Mutation p.V244F 0.39 deleterious(0.02) possibly_damaging(0.853) TCGA-73-4677-01 11 5153632 5153632 G A OR52A5 Missense_Mutation p.P81S 0.39 deleterious(0) probably_damaging(0.989) TCGA-73-4677-01 11 5345219 5345219 G C OR51B2 Missense_Mutation p.H103Q 0.37 deleterious(0.02) probably_damaging(0.962) TCGA-73-4677-01 11 5443901 5443901 G A OR51Q1 Silent p.A157A 0.09 TCGA-73-4677-01 11 558709 558709 T G C11orf35 Missense_Mutation p.E72D 0.17 tolerated(0.11) probably_damaging(0.991) TCGA-73-4677-01 11 55904317 55904317 C A OR8J3 Missense_Mutation p.R293M 0.32 deleterious(0) probably_damaging(0.928) TCGA-73-4677-01 11 58170161 58170161 G T OR5B3 Missense_Mutation p.S241Y 0.20 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-73-4677-01 11 58601981 58601981 T C GLYATL2 Missense_Mutation p.Q269R 0.14 tolerated(1) benign(0.196) TCGA-73-4677-01 11 65827268 65827268 G T SF3B2 Missense_Mutation p.D473Y 0.30 deleterious(0) probably_damaging(0.998) TCGA-73-4677-01 11 71949145 71949145 G T INPPL1 Missense_Mutation p.W1204C 0.46 deleterious(0.03) benign(0.001) TCGA-73-4677-01 11 7531000 7531000 C A OLFML1 Missense_Mutation p.H264N 0.27 deleterious(0.04) possibly_damaging(0.56) TCGA-73-4677-01 11 92531675 92531675 A T FAT3 Silent p.A1832A 0.28 TCGA-73-4677-01 12 100042185 100042185 C A FAM71C Missense_Mutation p.P78H 0.48 deleterious(0.02) probably_damaging(0.971) TCGA-73-4677-01 12 105538144 105538144 G A KIAA1033 Missense_Mutation p.R697Q 0.37 deleterious(0.02) probably_damaging(0.92) TCGA-73-4677-01 12 122990039 122990039 T A RSRC2 3'UTR 0.36 TCGA-73-4677-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.41 deleterious(0.02) possibly_damaging(0.773) TCGA-73-4677-01 12 3805981 3805981 C G EFCAB4B Missense_Mutation p.C62S 0.39 deleterious(0) probably_damaging(0.999) TCGA-73-4677-01 12 55421178 55421178 C G NEUROD4 Missense_Mutation p.H319D 0.43 deleterious(0.01) benign(0.147) TCGA-73-4677-01 12 55886519 55886519 C A OR6C68 Missense_Mutation p.R120S 0.39 deleterious_low_confidence(0) possibly_damaging(0.832) TCGA-73-4677-01 12 56479039 56479039 A T ERBB3 Intron 0.37 TCGA-73-4677-01 12 64202608 64202608 G A TMEM5 Silent p.V356V 0.42 TCGA-73-4677-01 13 101777019 101777019 A T NALCN Missense_Mutation p.V711D 0.27 tolerated(0.35) benign(0.017) TCGA-73-4677-01 13 49281044 49281044 T A CYSLTR2 Missense_Mutation p.C31S 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-73-4677-01 13 58298880 58298880 G T PCDH17 Missense_Mutation p.V978F 0.23 deleterious(0.01) benign(0.258) TCGA-73-4677-01 14 107131274 107131274 G A IGHV3-66 Missense_Mutation p.S36F 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.654) TCGA-73-4677-01 14 23523778 23523778 C T CDH24 Missense_Mutation p.G241S 0.29 deleterious(0.03) probably_damaging(1) TCGA-73-4677-01 14 42356688 42356688 C A LRFN5 Missense_Mutation p.P287H 0.28 deleterious(0) probably_damaging(1) TCGA-73-4677-01 14 52505531 52505531 C A NID2 Missense_Mutation p.A731S 0.22 deleterious(0) possibly_damaging(0.682) TCGA-73-4677-01 14 70793067 70793067 T A COX16 Nonsense_Mutation p.K102* 0.25 TCGA-73-4677-01 14 71443750 71443750 G T PCNX Missense_Mutation p.L232F 0.31 tolerated_low_confidence(0.08) benign(0.033) TCGA-73-4677-01 14 71502801 71502801 A G PCNX Missense_Mutation p.D1265G 0.27 deleterious(0) probably_damaging(0.999) TCGA-73-4677-01 14 72138121 72138121 A G SIPA1L1 Silent p.P847P 0.41 TCGA-73-4677-01 14 78399861 78399861 C T ADCK1 3'UTR 0.25 TCGA-73-4677-01 14 80971348 80971348 G A CEP128 Silent p.L1030L 0.34 TCGA-73-4677-01 14 81304608 81304608 C A CEP128 Missense_Mutation p.L288F 0.18 deleterious(0) probably_damaging(0.999) TCGA-73-4677-01 15 25451272 25451272 G T SNORD115-22 5'Flank 0.29 TCGA-73-4677-01 15 26793116 26793116 G T GABRB3 Missense_Mutation p.L416M 0.23 tolerated(0.25) benign(0.007) TCGA-73-4677-01 15 50168506 50168506 G T ATP8B4 Missense_Mutation p.A999D 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-73-4677-01 15 62232961 62232961 T A VPS13C Missense_Mutation p.D1829V 0.13 tolerated(0.36) benign(0.097) TCGA-73-4677-01 15 65702515 65702515 C A IGDCC4 Splice_Site p.X188_splice 0.41 TCGA-73-4677-01 15 72063533 72063533 G T THSD4 Missense_Mutation p.C967F 0.20 deleterious(0) probably_damaging(1) TCGA-73-4677-01 15 81517840 81517840 G C IL16 Missense_Mutation p.G34R 0.26 deleterious(0) probably_damaging(0.929) TCGA-73-4677-01 16 12571716 12571716 G T SNX29 Missense_Mutation p.K726N 0.31 deleterious(0) possibly_damaging(0.73) TCGA-73-4677-01 16 48249206 48249206 A T ABCC11 Missense_Mutation p.V334D 0.25 deleterious(0) probably_damaging(0.987) TCGA-73-4677-01 16 56875616 56875616 G T NUP93 Splice_Site p.X741_splice 0.15 TCGA-73-4677-01 16 70503108 70503108 G A FUK Silent p.E279E 0.29 TCGA-73-4677-01 16 76501258 76501258 A T CNTNAP4 Missense_Mutation p.D425V 0.33 tolerated(0.22) benign(0.035) TCGA-73-4677-01 17 10435205 10435205 C A MYH2 Missense_Mutation p.R814S 0.17 deleterious(0) benign(0.187) TCGA-73-4677-01 17 10440622 10440622 C A MYH2 Missense_Mutation p.V609F 0.35 deleterious(0) possibly_damaging(0.776) TCGA-73-4677-01 17 11865334 11865334 G C DNAH9 Missense_Mutation p.E4332Q 0.29 possibly_damaging(0.643) TCGA-73-4677-01 17 16068459 16068459 C T NCOR1 Missense_Mutation p.G151D 0.05 benign(0.04) TCGA-73-4677-01 17 16526384 16526384 G A ZNF624 Missense_Mutation p.H606Y 0.36 deleterious(0) probably_damaging(0.99) TCGA-73-4677-01 17 2597328 2597328 G A CLUH Silent p.L994L 0.23 TCGA-73-4677-01 17 26604229 26604229 C A AC061975.8 5'Flank 0.28 TCGA-73-4677-01 17 3591921 3591921 T A P2RX5 Nonsense_Mutation p.R296* 0.10 TCGA-73-4677-01 17 39642597 39642597 A T KRT36 3'UTR 0.16 TCGA-73-4677-01 17 41601039 41601039 C T DHX8 Missense_Mutation p.R1163C 0.37 deleterious(0) probably_damaging(0.999) TCGA-73-4677-01 17 4536594 4536594 C A ALOX15 Missense_Mutation p.G422V 0.33 deleterious(0) possibly_damaging(0.796) TCGA-73-4677-01 17 46627830 46627830 C T HOXB3 Missense_Mutation p.G388R 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-73-4677-01 17 51900917 51900917 G T KIF2B Missense_Mutation p.A175S 0.31 deleterious(0.03) probably_damaging(0.923) TCGA-73-4677-01 17 60802397 60802397 G T MARCH10 Missense_Mutation p.P669Q 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-73-4677-01 17 61988473 61988473 C T CSHL1 Intron 0.11 TCGA-73-4677-01 17 62175545 62175545 C T ERN1 Silent p.T37T 0.20 TCGA-73-4677-01 17 66903951 66903951 G - ABCA8 Frame_Shift_Del p.K697Nfs*16 0.23 TCGA-73-4677-01 17 80789581 80789581 G A ZNF750 Silent p.H250H 0.08 TCGA-73-4677-01 18 22804736 22804736 C T ZNF521 Missense_Mutation p.G1049E 0.16 tolerated(0.07) benign(0.07) TCGA-73-4677-01 18 22805482 22805482 G A ZNF521 Silent p.C800C 0.28 TCGA-73-4677-01 18 28906930 28906930 G A DSG1 Missense_Mutation p.E60K 0.15 deleterious(0) probably_damaging(0.99) TCGA-73-4677-01 18 42618602 42618602 G T SETBP1 Missense_Mutation p.A1385S 0.35 tolerated(1) benign(0.006) TCGA-73-4677-01 18 44560052 44560052 C A TCEB3B Silent p.T528T 0.13 TCGA-73-4677-01 18 44560065 44560065 A C TCEB3B Missense_Mutation p.L524R 0.14 deleterious(0.05) benign(0.021) TCGA-73-4677-01 18 5291456 5291456 C G ZBTB14 Missense_Mutation p.E251Q 0.19 tolerated(0.28) benign(0.142) TCGA-73-4677-01 18 59483586 59483586 C T RNF152 Silent p.V37V 0.42 TCGA-73-4677-01 18 61310714 61310714 C T SERPINB4 Missense_Mutation p.S33N 0.33 tolerated(0.09) possibly_damaging(0.692) TCGA-73-4677-01 19 10602719 10602719 T A KEAP1 Nonsense_Mutation p.K287* 0.44 TCGA-73-4677-01 19 11230871 11230871 A T LDLR Missense_Mutation p.E650V 0.56 deleterious(0.01) probably_damaging(0.939) TCGA-73-4677-01 19 1207021 1207028 CAGCCGCG - STK11 Frame_Shift_Del p.Q37Pfs*123 0.33 TCGA-73-4677-01 19 14991993 14991993 T A OR7A17 Missense_Mutation p.M59L 0.44 deleterious_low_confidence(0) possibly_damaging(0.521) TCGA-73-4677-01 19 15079179 15079179 C A SLC1A6 Missense_Mutation p.G162W 0.40 deleterious(0.01) probably_damaging(1) TCGA-73-4677-01 19 22379629 22379629 G A ZNF676 5'UTR 0.62 TCGA-73-4677-01 19 33639782 33639782 C T WDR88 Silent p.D215D 0.46 TCGA-73-4677-01 19 43528992 43528992 G T PSG11 Missense_Mutation p.A94E 0.40 deleterious(0.02) possibly_damaging(0.601) TCGA-73-4677-01 19 44377779 44377779 A T ZNF404 Missense_Mutation p.F196Y 0.42 deleterious(0) probably_damaging(0.953) TCGA-73-4677-01 19 54818597 54818597 C A LILRA5 3'UTR 0.50 TCGA-73-4677-01 19 54818598 54818598 C A LILRA5 3'UTR 0.52 TCGA-73-4677-01 19 55107243 55107243 G A LILRA1 Silent p.Q267Q 0.42 TCGA-73-4677-01 19 55107244 55107244 C A LILRA1 Missense_Mutation p.L268I 0.42 tolerated(0.17) benign(0.102) TCGA-73-4677-01 19 9071316 9071316 G A MUC16 Missense_Mutation p.T5377I 0.44 unknown(0) TCGA-73-4677-01 1 101705235 101705236 - CC S1PR1 Frame_Shift_Ins p.R233Pfs*4 0.41 TCGA-73-4677-01 1 103480084 103480084 T C COL11A1 Missense_Mutation p.I519V 0.37 probably_damaging(0.982) TCGA-73-4677-01 1 109271373 109271373 C G FNDC7 Missense_Mutation p.L497V 0.40 tolerated(0.41) benign(0.005) TCGA-73-4677-01 1 110258523 110258523 C A GSTM5 Intron 0.33 TCGA-73-4677-01 1 110734729 110734729 G T SLC6A17 Missense_Mutation p.A334S 0.40 deleterious(0.01) benign(0.341) TCGA-73-4677-01 1 117660813 117660813 C T TRIM45 Silent p.R355R 0.43 TCGA-73-4677-01 1 153122400 153122400 G T SPRR2G Missense_Mutation p.P63T 0.30 unknown(0) TCGA-73-4677-01 1 156834152 156834152 C A NTRK1 Silent p.I73I 0.45 TCGA-73-4677-01 1 158911926 158911926 A G PYHIN1 Missense_Mutation p.T247A 0.23 tolerated(0.05) probably_damaging(0.922) TCGA-73-4677-01 1 159284326 159284326 C T OR10J3 Missense_Mutation p.G42S 0.24 tolerated(0.15) benign(0.251) TCGA-73-4677-01 1 159504984 159504984 C A OR10J5 Missense_Mutation p.V272F 0.23 deleterious(0.01) benign(0.219) TCGA-73-4677-01 1 173174474 173174474 C G TNFSF4 Intron 0.19 TCGA-73-4677-01 1 173478718 173478718 G T SLC9C2 Missense_Mutation p.L1010I 0.42 tolerated(0.42) benign(0.06) TCGA-73-4677-01 1 173953758 173953758 C A RC3H1 Splice_Site p.X78_splice 0.46 TCGA-73-4677-01 1 175334162 175334162 C A TNR Silent p.V857V 0.25 TCGA-73-4677-01 1 176668278 176668278 C A PAPPA2 Missense_Mutation p.A930D 0.20 deleterious(0) possibly_damaging(0.602) TCGA-73-4677-01 1 196794714 196794714 G T CFHR1 Nonsense_Mutation p.E56* 0.39 TCGA-73-4677-01 1 202287787 202287787 T C LGR6 Missense_Mutation p.Y786H 0.21 tolerated(0.06) benign(0.443) TCGA-73-4677-01 1 207696984 207696984 C T CR1 Silent p.I172I 0.17 TCGA-73-4677-01 1 216595449 216595449 T A USH2A Missense_Mutation p.Q77L 0.20 benign(0.001) TCGA-73-4677-01 1 220088847 220088847 G T SLC30A10 Missense_Mutation p.Q468K 0.45 tolerated_low_confidence(0.1) benign(0.007) TCGA-73-4677-01 1 220307795 220307795 G T IARS2 Missense_Mutation p.G630V 0.25 deleterious(0) probably_damaging(0.998) TCGA-73-4677-01 1 228482069 228482069 C T OBSCN Missense_Mutation p.S4212L 0.19 benign(0.007) TCGA-73-4677-01 1 237843841 237843841 G T RYR2 Missense_Mutation p.G2994V 0.21 probably_damaging(0.981) TCGA-73-4677-01 1 238090871 238090871 A T RP11-193H5.1 RNA 0.52 TCGA-73-4677-01 1 243663046 243663046 T G AKT3 3'Flank 0.19 TCGA-73-4677-01 1 243809238 243809238 C T AKT3 Missense_Mutation p.G129E 0.04 tolerated(0.22) benign(0.002) TCGA-73-4677-01 1 247836300 247836300 G T OR13G1 Missense_Mutation p.T15N 0.45 deleterious(0) benign(0.086) TCGA-73-4677-01 1 248402357 248402357 A T OR2M4 Missense_Mutation p.I43F 0.23 tolerated(0.1) benign(0.002) TCGA-73-4677-01 20 25059410 25059410 G A VSX1 Intron 0.16 TCGA-73-4677-01 20 32267639 32267639 C T E2F1 Missense_Mutation p.R165Q 0.44 deleterious(0) probably_damaging(1) TCGA-73-4677-01 20 54823836 54823836 G A MC3R 5'UTR 0.40 TCGA-73-4677-01 20 62421979 62421979 C T ZBTB46 Silent p.A44A 0.06 TCGA-73-4677-01 21 34117919 34117919 G A PAXBP1 Silent p.T678T 0.26 TCGA-73-4677-01 21 47836155 47836155 G T PCNT Missense_Mutation p.S2108I 0.30 possibly_damaging(0.766) TCGA-73-4677-01 21 47836156 47836156 C T PCNT Silent p.S2108S 0.30 TCGA-73-4677-01 22 23438217 23438217 G T GNAZ Missense_Mutation p.G112V 0.41 tolerated(0.3) benign(0.287) TCGA-73-4677-01 22 41864685 41864685 G A PHF5A 5'UTR 0.23 TCGA-73-4677-01 22 44221895 44221895 C T SULT4A1 Missense_Mutation p.D281N 0.28 deleterious(0.01) benign(0.039) TCGA-73-4677-01 2 113831983 113831983 G A IL1F10 Missense_Mutation p.C37Y 0.09 tolerated(0.22) benign(0.004) TCGA-73-4677-01 2 11733003 11733003 C A GREB1 Missense_Mutation p.P483T 0.42 deleterious(0.05) benign(0.144) TCGA-73-4677-01 2 11733004 11733004 C A GREB1 Missense_Mutation p.P483Q 0.45 tolerated(0.08) benign(0.026) TCGA-73-4677-01 2 127952938 127952938 A G CYP27C1 Missense_Mutation p.V231A 0.32 deleterious(0) benign(0.422) TCGA-73-4677-01 2 128324318 128324318 A G MYO7B Missense_Mutation p.E129G 0.25 deleterious(0) probably_damaging(0.997) TCGA-73-4677-01 2 131356232 131356232 G T CFC1 Missense_Mutation p.S77Y 0.13 deleterious(0.01) possibly_damaging(0.693) TCGA-73-4677-01 2 131486901 131486901 G T GPR148 Silent p.L59L 0.17 TCGA-73-4677-01 2 133541745 133541745 C A NCKAP5 Missense_Mutation p.S880I 0.14 deleterious(0.05) possibly_damaging(0.635) TCGA-73-4677-01 2 136033319 136033319 C T ZRANB3 Missense_Mutation p.A325T 0.26 deleterious(0.01) probably_damaging(0.911) TCGA-73-4677-01 2 151328209 151328209 G T RND3 Missense_Mutation p.L139M 0.15 tolerated(0.61) probably_damaging(0.998) TCGA-73-4677-01 2 165984179 165984179 C T SCN3A Missense_Mutation p.E1119K 0.12 tolerated(0.19) possibly_damaging(0.5) TCGA-73-4677-01 2 1668737 1668737 G T PXDN Silent p.T467T 0.22 TCGA-73-4677-01 2 179404270 179404270 G T TTN Missense_Mutation p.A32841D 0.31 TCGA-73-4677-01 2 205986568 205986568 C T PARD3B Nonsense_Mutation p.R354* 0.33 TCGA-73-4677-01 2 219824752 219824752 G T CDK5R2 Silent p.V70V 0.54 TCGA-73-4677-01 2 228882330 228882330 G T SPHKAP Silent p.A1080A 0.35 TCGA-73-4677-01 2 228884754 228884754 G T SPHKAP Nonsense_Mutation p.Y272* 0.29 TCGA-73-4677-01 2 234975197 234975197 G T SPP2 Missense_Mutation p.L155F 0.28 tolerated(0.35) benign(0.055) TCGA-73-4677-01 2 238244913 238244913 G A COL6A3 Missense_Mutation p.P2944S 0.18 unknown(0) TCGA-73-4677-01 2 37121062 37121062 C A STRN Missense_Mutation p.A304S 0.28 tolerated(1) benign(0.002) TCGA-73-4677-01 2 3743913 3743913 G T ALLC Missense_Mutation p.R239M 0.39 deleterious(0) probably_damaging(0.925) TCGA-73-4677-01 2 68882018 68882018 G T PROKR1 Silent p.L164L 0.17 TCGA-73-4677-01 2 69002465 69002465 C A ARHGAP25 Silent p.S58S 0.16 TCGA-73-4677-01 2 86437740 86437740 C T MRPL35 Silent p.Y172Y 0.33 TCGA-73-4677-01 2 90108969 90108969 C T IGKV6D-41 Silent p.V78V 0.18 TCGA-73-4677-01 3 10106488 10106488 C T FANCD2 Silent p.L699L 0.25 TCGA-73-4677-01 3 128181682 128181682 G T DNAJB8 Missense_Mutation p.A136E 0.37 deleterious(0.04) benign(0.033) TCGA-73-4677-01 3 134967276 134967276 C G EPHB1 Missense_Mutation p.A872G 0.25 tolerated(0.39) benign(0.001) TCGA-73-4677-01 3 15687019 15687019 G T BTD 3'UTR 0.21 TCGA-73-4677-01 3 168840365 168840365 T C MECOM Intron 0.13 TCGA-73-4677-01 3 170011269 170011269 C A PRKCI Missense_Mutation p.Q464K 0.14 tolerated(0.1) benign(0.113) TCGA-73-4677-01 3 175520848 175520848 G T NAALADL2 Missense_Mutation p.A749S 0.20 deleterious(0.01) possibly_damaging(0.587) TCGA-73-4677-01 3 179399708 179399708 G T USP13 Missense_Mutation p.A71S 0.30 deleterious(0.04) benign(0.103) TCGA-73-4677-01 3 183885808 183885808 A T DVL3 Missense_Mutation p.T485S 0.38 tolerated(0.05) possibly_damaging(0.627) TCGA-73-4677-01 3 186299261 186299261 A G DNAJB11 Silent p.Q186Q 0.35 TCGA-73-4677-01 3 19974919 19974919 G C EFHB Missense_Mutation p.Q198E 0.15 deleterious_low_confidence(0.03) benign(0.055) TCGA-73-4677-01 3 33194357 33194357 C A SUSD5 Silent p.L589L 0.34 TCGA-73-4677-01 3 52546617 52546617 G T STAB1 Silent p.L995L 0.33 TCGA-73-4677-01 3 96533570 96533570 T A EPHA6 Missense_Mutation p.C35S 0.13 deleterious_low_confidence(0) benign(0.065) TCGA-73-4677-01 4 122261765 122261765 C A QRFPR Missense_Mutation p.G114V 0.07 deleterious(0) probably_damaging(0.977) TCGA-73-4677-01 4 129793096 129793096 A C JADE1 Missense_Mutation p.K736N 0.16 tolerated(0.21) benign(0.031) TCGA-73-4677-01 4 165961514 165961514 G T TRIM60 Missense_Mutation p.C97F 0.22 deleterious(0) probably_damaging(0.995) TCGA-73-4677-01 4 22748924 22748924 G T GBA3 Missense_Mutation p.D98Y 0.09 deleterious(0) possibly_damaging(0.894) TCGA-73-4677-01 4 30726120 30726120 C A PCDH7 Missense_Mutation p.P1026T 0.19 tolerated(0.34) probably_damaging(0.999) TCGA-73-4677-01 4 40245040 40245040 G T RHOH Missense_Mutation p.D12Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-73-4677-01 4 46043115 46043115 C A GABRG1 Nonsense_Mutation p.G430* 0.15 TCGA-73-4677-01 4 55131305 55131305 A T PDGFRA Intron 0.17 TCGA-73-4677-01 4 65194246 65194246 A G TECRL Silent p.G105G 0.24 TCGA-73-4677-01 4 65275151 65275151 G T TECRL 5'UTR 0.27 TCGA-73-4677-01 4 6642869 6642869 G A MRFAP1 Missense_Mutation p.A94T 0.18 tolerated(0.57) benign(0.002) TCGA-73-4677-01 4 66467674 66467674 C A EPHA5 Missense_Mutation p.V199F 0.19 deleterious(0) possibly_damaging(0.679) TCGA-73-4677-01 4 70080244 70080244 G C UGT2B11 Missense_Mutation p.P66R 0.31 tolerated(0.07) possibly_damaging(0.694) TCGA-73-4677-01 4 8230363 8230363 A T SH3TC1 Missense_Mutation p.H981L 0.56 tolerated(0.19) possibly_damaging(0.795) TCGA-73-4677-01 4 85593954 85593954 C A WDFY3 3'UTR 0.24 TCGA-73-4677-01 4 90170270 90170270 C G GPRIN3 Missense_Mutation p.R331T 0.17 deleterious(0) probably_damaging(0.999) TCGA-73-4677-01 4 96123907 96123907 A G UNC5C Missense_Mutation p.L704P 0.44 deleterious(0) probably_damaging(0.993) TCGA-73-4677-01 4 9784739 9784739 C G DRD5 Missense_Mutation p.N362K 0.32 deleterious(0) probably_damaging(0.973) TCGA-73-4677-01 5 115783392 115783392 G A SEMA6A Silent p.V670V 0.40 TCGA-73-4677-01 5 118824886 118824886 G T HSD17B4 Splice_Site p.X233_splice 0.14 TCGA-73-4677-01 5 127627262 127627262 G T FBN2 Missense_Mutation p.P2084H 0.13 deleterious(0) probably_damaging(0.993) TCGA-73-4677-01 5 133914427 133914427 C T JADE2 Missense_Mutation p.T598I 0.23 tolerated(0.18) benign(0.005) TCGA-73-4677-01 5 137217708 137217708 C A MYOT Missense_Mutation p.Q244K 0.16 deleterious(0.01) possibly_damaging(0.808) TCGA-73-4677-01 5 137721771 137721771 G T KDM3B Missense_Mutation p.G281W 0.29 deleterious(0) probably_damaging(0.993) TCGA-73-4677-01 5 139742048 139742048 G T SLC4A9 Silent p.L270L 0.34 TCGA-73-4677-01 5 140182490 140182490 G A PCDHA3 Missense_Mutation p.V570M 0.16 tolerated_low_confidence(0.06) possibly_damaging(0.63) TCGA-73-4677-01 5 140201397 140201397 C A PCDHA5 Missense_Mutation p.L13I 0.13 deleterious_low_confidence(0.02) benign(0.206) TCGA-73-4677-01 5 140216113 140216113 G T PCDHA7 Silent p.L715L 0.17 TCGA-73-4677-01 5 140476111 140476111 C A PCDHB2 Silent p.P579P 0.25 TCGA-73-4677-01 5 140574291 140574291 C T PCDHB10 Silent p.A722A 0.41 TCGA-73-4677-01 5 141324868 141324868 A G PCDH12 3'UTR 0.14 TCGA-73-4677-01 5 145562167 145562167 A G LARS 5'UTR 0.47 TCGA-73-4677-01 5 148406827 148406827 A T SH3TC2 Missense_Mutation p.L823Q 0.16 deleterious(0) possibly_damaging(0.894) TCGA-73-4677-01 5 150028579 150028579 C T SYNPO Missense_Mutation p.P492S 0.29 tolerated(0.43) benign(0.015) TCGA-73-4677-01 5 154183157 154183157 C A LARP1 Missense_Mutation p.A687D 0.16 deleterious(0) probably_damaging(0.989) TCGA-73-4677-01 5 15928571 15928571 G C FBXL7 Missense_Mutation p.V234L 0.15 tolerated(0.36) probably_damaging(0.952) TCGA-73-4677-01 5 169701312 169701312 G T LCP2 Nonsense_Mutation p.S106* 0.21 TCGA-73-4677-01 5 176314590 176314590 C A HK3 Missense_Mutation p.A488S 0.21 tolerated(0.33) benign(0.172) TCGA-73-4677-01 5 180477326 180477326 T A BTNL9 Missense_Mutation p.N231K 0.32 deleterious(0) possibly_damaging(0.908) TCGA-73-4677-01 5 41049501 41049501 G T MROH2B Missense_Mutation p.A461E 0.11 tolerated(0.6) benign(0.001) TCGA-73-4677-01 5 55059013 55059013 G T DDX4 Missense_Mutation p.E72D 0.15 tolerated_low_confidence(0.38) benign(0.003) TCGA-73-4677-01 5 71491072 71491072 C A MAP1B Silent p.P630P 0.30 TCGA-73-4677-01 5 7521012 7521012 G C ADCY2 Missense_Mutation p.Q190H 0.23 deleterious(0) possibly_damaging(0.896) TCGA-73-4677-01 5 77409635 77409635 C T AP3B1 Silent p.R730R 0.08 TCGA-73-4677-01 5 82836721 82836721 G C VCAN Missense_Mutation p.E2633D 0.20 tolerated(0.06) benign(0.167) TCGA-73-4677-01 5 82836722 82836722 G T VCAN Nonsense_Mutation p.E2634* 0.19 TCGA-73-4677-01 6 117609614 117609615 GA - ROS1 3'UTR 0.24 TCGA-73-4677-01 6 128388674 128388674 C A PTPRK Missense_Mutation p.S716I 0.29 tolerated(0.06) possibly_damaging(0.663) TCGA-73-4677-01 6 137323091 137323091 C T IL20RA Silent p.Q422Q 0.29 TCGA-73-4677-01 6 137814889 137814889 G C OLIG3 Missense_Mutation p.S140C 0.25 deleterious(0) probably_damaging(0.99) TCGA-73-4677-01 6 158363843 158363843 G T SNX9 Missense_Mutation p.Q587H 0.18 tolerated(0.15) possibly_damaging(0.838) TCGA-73-4677-01 6 160176455 160176455 G T WTAP Missense_Mutation p.G335W 0.32 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-73-4677-01 6 168434609 168434609 G C KIF25 Missense_Mutation p.S72T 0.28 tolerated(1) benign(0.359) TCGA-73-4677-01 6 24467399 24467399 C T GPLD1 Missense_Mutation p.E217K 0.08 tolerated(0.06) probably_damaging(0.914) TCGA-73-4677-01 6 27419486 27419486 C A ZNF184 Nonsense_Mutation p.E618* 0.44 TCGA-73-4677-01 6 28501750 28501750 C A GPX5 Missense_Mutation p.H158N 0.17 tolerated(0.22) benign(0.071) TCGA-73-4677-01 6 29364696 29364696 G C OR12D2 Missense_Mutation p.V74L 0.21 deleterious(0.01) benign(0.111) TCGA-73-4677-01 6 32130715 32130715 T G PPT2 Silent p.P305P 0.25 TCGA-73-4677-01 6 32178542 32178542 C A NOTCH4 Missense_Mutation p.G951V 0.21 deleterious(0) probably_damaging(1) TCGA-73-4677-01 6 33406232 33406232 C T SYNGAP1 Missense_Mutation p.R475W 0.14 deleterious(0) probably_damaging(0.999) TCGA-73-4677-01 6 43275371 43275371 C A CRIP3 Missense_Mutation p.G103C 0.36 deleterious(0.02) benign(0.022) TCGA-73-4677-01 6 50791330 50791330 C T TFAP2B Silent p.L98L 0.35 TCGA-73-4677-01 7 107605017 107605017 C G LAMB1 Missense_Mutation p.E560Q 0.40 deleterious(0.01) benign(0.164) TCGA-73-4677-01 7 107708514 107708514 C T LAMB4 Missense_Mutation p.C798Y 0.15 deleterious(0.01) probably_damaging(0.995) TCGA-73-4677-01 7 107800925 107800925 C A NRCAM Missense_Mutation p.R1160L 0.34 tolerated(0.11) benign(0.11) TCGA-73-4677-01 7 114271723 114271723 T A FOXP2 Silent p.P271P 0.42 TCGA-73-4677-01 7 122635727 122635727 A T TAS2R16 5'UTR 0.12 TCGA-73-4677-01 7 129348982 129348982 G T NRF1 Missense_Mutation p.G225V 0.31 deleterious(0) probably_damaging(1) TCGA-73-4677-01 7 130025024 130025024 C G CPA1 Nonsense_Mutation p.Y275* 0.32 TCGA-73-4677-01 7 131831381 131831381 C A PLXNA4 Missense_Mutation p.G1648V 0.34 deleterious(0) probably_damaging(1) TCGA-73-4677-01 7 142612698 142612698 C T TRPV5 Missense_Mutation p.G388E 0.22 deleterious(0) probably_damaging(0.997) TCGA-73-4677-01 7 142881280 142881280 C T TAS2R39 Missense_Mutation p.H257Y 0.34 deleterious(0.04) probably_damaging(0.999) TCGA-73-4677-01 7 146818081 146818081 G C CNTNAP2 Missense_Mutation p.Q255H 0.35 deleterious(0.01) benign(0.145) TCGA-73-4677-01 7 149545230 149545230 G T ZNF862 Silent p.R216R 0.12 TCGA-73-4677-01 7 150554475 150554475 A G AOC1 Missense_Mutation p.H306R 0.37 tolerated(0.09) benign(0.002) TCGA-73-4677-01 7 150918751 150918751 C A ABCF2 Missense_Mutation p.L278F 0.32 deleterious(0) benign(0.242) TCGA-73-4677-01 7 15601460 15601460 G T AGMO Missense_Mutation p.P4Q 0.35 deleterious_low_confidence(0.03) benign(0.02) TCGA-73-4677-01 7 158468325 158468325 C T NCAPG2 Silent p.P390P 0.15 TCGA-73-4677-01 7 35733804 35733804 G A HERPUD2 Missense_Mutation p.P46L 0.19 deleterious(0) probably_damaging(1) TCGA-73-4677-01 7 41729879 41729879 G C INHBA Missense_Mutation p.T217S 0.31 deleterious(0.04) benign(0.088) TCGA-73-4677-01 7 44189441 44189441 C T GCK Silent p.V200V 0.28 TCGA-73-4677-01 7 44579150 44579150 C T NPC1L1 Silent p.P282P 0.20 TCGA-73-4677-01 7 45743342 45743342 C T ADCY1 Silent p.D905D 0.36 TCGA-73-4677-01 7 55467749 55467749 G C LANCL2 Silent p.L210L 0.37 TCGA-73-4677-01 7 72756838 72756838 G T FKBP6 Nonsense_Mutation p.E309* 0.36 TCGA-73-4677-01 7 81579632 81579632 G A CACNA2D1 3'UTR 0.13 TCGA-73-4677-01 7 90003668 90003668 G T GTPBP10 Missense_Mutation p.Q197H 0.32 deleterious(0) probably_damaging(0.998) TCGA-73-4677-01 8 113421166 113421166 G A CSMD3 Missense_Mutation p.L1831F 0.27 tolerated(0.08) possibly_damaging(0.657) TCGA-73-4677-01 8 113484912 113484912 C A CSMD3 Missense_Mutation p.G1768V 0.31 deleterious(0) probably_damaging(0.943) TCGA-73-4677-01 8 131833668 131833668 T C ADCY8 Splice_Site p.X892_splice 0.34 TCGA-73-4677-01 8 133045310 133045310 C G OC90 Missense_Mutation p.D279H 0.28 deleterious(0.02) benign(0.021) TCGA-73-4677-01 8 133858080 133858080 C T PHF20L1 Missense_Mutation p.A989V 0.24 deleterious(0) benign(0.119) TCGA-73-4677-01 8 145749479 145749479 C T LRRC14 3'UTR 0.32 TCGA-73-4677-01 8 24249805 24249805 C A ADAMDEC1 Missense_Mutation p.T40K 0.16 tolerated(1) benign(0) TCGA-73-4677-01 8 3038645 3038645 G T CSMD1 Missense_Mutation p.H1904Q 0.30 possibly_damaging(0.503) TCGA-73-4677-01 8 37735015 37735015 A T RAB11FIP1 Silent p.I142I 0.33 TCGA-73-4677-01 8 39564357 39564357 C A ADAM18 Missense_Mutation p.P651T 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-73-4677-01 8 41566318 41566318 G T ANK1 Missense_Mutation p.A692D 0.30 deleterious(0) probably_damaging(0.996) TCGA-73-4677-01 8 48701799 48701799 C A PRKDC Missense_Mutation p.R3556S 0.37 benign(0.071) TCGA-73-4677-01 8 53079524 53079524 C T ST18 Silent p.R364R 0.32 TCGA-73-4677-01 8 55539921 55539921 C A RP1 Missense_Mutation p.T1160K 0.28 deleterious(0.01) benign(0.391) TCGA-73-4677-01 8 77618080 77618080 C G ZFHX4 Missense_Mutation p.A586G 0.36 benign(0.003) TCGA-73-4677-01 8 77776737 77776737 C T ZFHX4 Missense_Mutation p.A3596V 0.26 probably_damaging(0.987) TCGA-73-4677-01 8 82606934 82606934 T C SLC10A5 Missense_Mutation p.T92A 0.30 tolerated(0.22) benign(0.005) TCGA-73-4677-01 8 89086945 89086945 G T MMP16 Missense_Mutation p.N370K 0.30 deleterious(0.04) benign(0.334) TCGA-73-4677-01 8 95390503 95390503 T C RAD54B Missense_Mutation p.E807G 0.28 deleterious(0.01) possibly_damaging(0.855) TCGA-73-4677-01 9 103213106 103213106 A G MSANTD3 Missense_Mutation p.E229G 0.30 deleterious_low_confidence(0.03) possibly_damaging(0.506) TCGA-73-4677-01 9 107457008 107457008 C A OR13D1 Missense_Mutation p.D102E 0.31 deleterious(0) possibly_damaging(0.908) TCGA-73-4677-01 9 113169069 113169069 C A SVEP1 Missense_Mutation p.W2937C 0.36 probably_damaging(1) TCGA-73-4677-01 9 120475067 120475067 G A TLR4 Missense_Mutation p.G221S 0.16 tolerated(0.05) benign(0.244) TCGA-73-4677-01 9 135278199 135278199 C A TTF1 Nonsense_Mutation p.E4* 0.12 TCGA-73-4677-01 9 140146898 140146898 G A C9orf173 Missense_Mutation p.G138D 0.19 deleterious(0.02) probably_damaging(0.996) TCGA-73-4677-01 9 19082957 19082957 C A HAUS6 Missense_Mutation p.V262F 0.10 deleterious(0) probably_damaging(0.943) TCGA-73-4677-01 9 34500817 34500817 G T DNAI1 Silent p.L333L 0.10 TCGA-73-4677-01 9 36665487 36665488 TA - MELK Frame_Shift_Del p.M440Vfs*3 0.16 TCGA-73-4677-01 9 70993229 70993229 G T PGM5 Nonsense_Mutation p.G126* 0.37 TCGA-73-4677-01 9 71114208 71114208 G A PGM5 Silent p.V515V 0.43 TCGA-73-4677-01 9 74863360 74863360 G T GDA Intron 0.32 TCGA-73-4677-01 9 8339047 8339047 C A PTPRD Nonsense_Mutation p.E1752* 0.33 TCGA-73-4677-01 9 90322342 90322342 A T DAPK1 3'UTR 0.25 TCGA-73-4677-01 9 95797636 95797636 G T FGD3 Missense_Mutation p.R648L 0.23 tolerated(0.36) benign(0.001) TCGA-73-4677-01 X 118222823 118222823 C A KIAA1210 Silent p.G790G 0.45 TCGA-73-4677-01 X 135431775 135431775 C T GPR112 Silent p.D1970D 0.04 TCGA-73-4677-01 X 151935925 151935925 C A MAGEA3 Missense_Mutation p.S81I 0.57 tolerated(0.08) possibly_damaging(0.591) TCGA-73-4677-01 X 35820648 35820648 C T MAGEB16 Missense_Mutation p.A112V 0.44 tolerated(0.84) benign(0.045) TCGA-73-4677-01 X 36007662 36007662 G T CXorf22 3'UTR 0.38 TCGA-73-4677-01 X 54949684 54949684 A G TRO Missense_Mutation p.N240S 0.62 tolerated(0.22) unknown(0) TCGA-73-4677-01 X 6069150 6069150 G T NLGN4X Missense_Mutation p.L120M 0.38 tolerated(0.05) probably_damaging(0.993) TCGA-73-7498-01 10 121662475 121662475 T G SEC23IP Silent p.P287P 0.23 TCGA-73-7498-01 10 124351977 124351977 G C DMBT1 Missense_Mutation p.G789A 0.25 deleterious(0) unknown(0) TCGA-73-7498-01 10 131665437 131665437 C A EBF3 Missense_Mutation p.C327F 0.27 deleterious(0) possibly_damaging(0.849) TCGA-73-7498-01 10 54528269 54528269 C T MBL2 Nonsense_Mutation p.W125* 0.32 TCGA-73-7498-01 10 55566840 55566840 G T PCDH15 Silent p.T1515T 0.18 TCGA-73-7498-01 10 75406412 75406412 G A SYNPO2L 3'UTR 0.40 TCGA-73-7498-01 11 101375285 101375285 A G TRPC6 Silent p.L139L 0.29 TCGA-73-7498-01 11 117374709 117374709 G T DSCAML1 Missense_Mutation p.P797H 0.28 deleterious(0.05) probably_damaging(0.997) TCGA-73-7498-01 11 119206355 119206355 G T RNF26 Missense_Mutation p.G175W 0.22 deleterious(0) probably_damaging(0.939) TCGA-73-7498-01 11 120989283 120989283 G A TECTA Silent p.L353L 0.05 TCGA-73-7498-01 11 31812372 31812372 T A PAX6 Missense_Mutation p.M371L 0.22 tolerated(0.06) benign(0.007) TCGA-73-7498-01 11 51411684 51411684 T A OR4A5 Missense_Mutation p.S238C 0.23 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-73-7498-01 11 57982442 57982442 C G OR1S1 Missense_Mutation p.L76V 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-73-7498-01 11 68579920 68579920 C G CPT1A Missense_Mutation p.R89P 0.25 tolerated(0.25) benign(0.002) TCGA-73-7498-01 11 69588224 69588224 C T FGF4 Silent p.K158K 0.06 TCGA-73-7498-01 12 101679641 101679641 C - UTP20 Frame_Shift_Del p.Y104Ifs*28 0.34 TCGA-73-7498-01 12 113435349 113435349 C A OAS2 Missense_Mutation p.P218T 0.31 tolerated(0.09) benign(0.034) TCGA-73-7498-01 12 113624562 113624562 C T RITA1 Missense_Mutation p.P4L 0.11 tolerated(0.05) benign(0.032) TCGA-73-7498-01 12 12022897 12022897 A G ETV6 Missense_Mutation p.I335V 0.29 tolerated(0.08) benign(0.443) TCGA-73-7498-01 12 126135237 126135237 G A TMEM132B Missense_Mutation p.R546Q 0.24 deleterious(0.04) probably_damaging(0.999) TCGA-73-7498-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.20 deleterious(0.04) probably_damaging(0.993) TCGA-73-7498-01 12 33579161 33579161 G C SYT10 Missense_Mutation p.P141A 0.17 tolerated(0.05) probably_damaging(0.996) TCGA-73-7498-01 12 50481255 50481255 G A SMARCD1 Missense_Mutation p.R214Q 0.34 tolerated(0.06) benign(0.282) TCGA-73-7498-01 12 56297168 56297168 T A WIBG Intron 0.19 TCGA-73-7498-01 13 102105130 102105130 G T ITGBL1 5'UTR 0.08 TCGA-73-7498-01 13 51936201 51936201 T A SERPINE3 3'UTR 0.25 TCGA-73-7498-01 14 20019965 20019965 G T POTEM Missense_Mutation p.H86N 0.06 deleterious_low_confidence(0.01) benign(0.027) TCGA-73-7498-01 14 45433134 45433134 G C FAM179B Missense_Mutation p.E504Q 0.24 tolerated(0.05) probably_damaging(0.971) TCGA-73-7498-01 14 69256365 69256365 T A ZFP36L1 Missense_Mutation p.D301V 0.31 deleterious(0) probably_damaging(0.999) TCGA-73-7498-01 15 25336934 25336934 G T SNORD116-23 RNA 0.23 TCGA-73-7498-01 15 25458874 25458874 C A SNORD115-24 RNA 0.27 TCGA-73-7498-01 15 72953662 72953662 C T GOLGA6B Missense_Mutation p.R208W 0.12 deleterious(0) benign(0.018) TCGA-73-7498-01 15 78565514 78565514 A - DNAJA4 Frame_Shift_Del p.N161Mfs*2 0.25 TCGA-73-7498-01 15 93595608 93595608 C A RGMA Missense_Mutation p.R95L 0.32 deleterious(0.01) possibly_damaging(0.619) TCGA-73-7498-01 16 1308080 1308080 C A TPSD1 Missense_Mutation p.P181T 0.23 tolerated(0.48) possibly_damaging(0.855) TCGA-73-7498-01 16 24834870 24834870 C T TNRC6A Silent p.S1877S 0.29 TCGA-73-7498-01 16 27353517 27353517 A G IL4R Missense_Mutation p.N49S 0.09 tolerated(0.1) benign(0.004) TCGA-73-7498-01 17 26817852 26817852 G A SLC13A2 Missense_Mutation p.V217I 0.27 tolerated(0.47) benign(0.003) TCGA-73-7498-01 17 38976885 38976885 C T KRT10 Missense_Mutation p.E249K 0.27 deleterious(0) probably_damaging(0.964) TCGA-73-7498-01 17 40481573 40481573 A - STAT3 Frame_Shift_Del p.L411* 0.19 TCGA-73-7498-01 17 40557198 40557198 C A PTRF Missense_Mutation p.R227L 0.22 deleterious(0.01) probably_damaging(0.969) TCGA-73-7498-01 17 7340297 7340297 C T TMEM102 Silent p.S333S 0.35 TCGA-73-7498-01 17 78185956 78185956 G A SGSH Missense_Mutation p.P288L 0.33 deleterious(0) possibly_damaging(0.722) TCGA-73-7498-01 17 79094976 79094976 G T AATK Missense_Mutation p.F920L 0.36 tolerated(0.27) benign(0.003) TCGA-73-7498-01 18 14478283 14478283 G T CXADRP3 RNA 0.18 TCGA-73-7498-01 18 42531919 42531928 GGGACAGACA - SETBP1 Frame_Shift_Del p.G872Tfs*86 0.15 TCGA-73-7498-01 18 42532001 42532001 T C SETBP1 Missense_Mutation p.L899P 0.37 deleterious(0) probably_damaging(0.999) TCGA-73-7498-01 19 10602925 10602925 T A KEAP1 Missense_Mutation p.E218V 0.48 deleterious(0.02) possibly_damaging(0.623) TCGA-73-7498-01 19 1207065 1207065 G - STK11 Frame_Shift_Del p.D53Tfs*11 0.28 TCGA-73-7498-01 19 12874498 12874498 C A HOOK2 Missense_Mutation p.R641L 0.37 tolerated(0.66) benign(0.007) TCGA-73-7498-01 19 38126058 38126058 C G ZFP30 Missense_Mutation p.G462R 0.43 deleterious(0.01) probably_damaging(1) TCGA-73-7498-01 19 51768793 51768793 G A SIGLECL1 Nonsense_Mutation p.W65* 0.46 TCGA-73-7498-01 19 57641606 57641606 G T USP29 Missense_Mutation p.L521F 0.44 deleterious(0.05) possibly_damaging(0.859) TCGA-73-7498-01 1 116941354 116941354 G A ATP1A1 Missense_Mutation p.A746T 0.50 deleterious(0.02) possibly_damaging(0.823) TCGA-73-7498-01 1 151378624 151378624 C A POGZ Missense_Mutation p.G963C 0.12 tolerated(0.05) possibly_damaging(0.507) TCGA-73-7498-01 1 152192190 152192190 G T HRNR Missense_Mutation p.H639N 0.12 unknown(0) TCGA-73-7498-01 1 152975887 152975887 A C SPRR3 Missense_Mutation p.I131L 0.16 tolerated(0.12) benign(0.026) TCGA-73-7498-01 1 161049727 161049727 G A PVRL4 Missense_Mutation p.A31V 0.19 tolerated(0.13) benign(0.362) TCGA-73-7498-01 1 169839455 169839455 C A SCYL3 Missense_Mutation p.R189L 0.44 deleterious(0) probably_damaging(0.96) TCGA-73-7498-01 1 181764126 181764126 C T CACNA1E Missense_Mutation p.R2052W 0.08 deleterious(0) probably_damaging(0.919) TCGA-73-7498-01 1 196342361 196342361 C A KCNT2 Nonsense_Mutation p.E438* 0.20 TCGA-73-7498-01 1 204124295 204124295 C A REN Missense_Mutation p.S357I 0.17 tolerated(0.38) benign(0.321) TCGA-73-7498-01 1 207868033 207868033 C T CR1L Missense_Mutation p.P267S 0.33 tolerated(0.65) benign(0.037) TCGA-73-7498-01 1 216144109 216144109 G A USH2A Missense_Mutation p.T2272M 0.11 benign(0.21) TCGA-73-7498-01 1 22329535 22329535 G T CELA3A Missense_Mutation p.R28L 0.34 deleterious(0) probably_damaging(0.956) TCGA-73-7498-01 1 237823303 237823303 T A RYR2 Missense_Mutation p.Y2743N 0.38 possibly_damaging(0.724) TCGA-73-7498-01 1 247769715 247769715 C A OR2G3 Silent p.L276L 0.29 TCGA-73-7498-01 1 248685488 248685488 G T OR2G6 Missense_Mutation p.V181L 0.46 tolerated(0.1) possibly_damaging(0.872) TCGA-73-7498-01 20 3655458 3655458 G T ADAM33 Silent p.P124P 0.08 TCGA-73-7498-01 20 42935469 42935469 C A FITM2 Silent p.L195L 0.18 TCGA-73-7498-01 20 43850359 43850359 A C SEMG2 Missense_Mutation p.K29T 0.26 deleterious(0) probably_damaging(0.982) TCGA-73-7498-01 20 58489197 58489197 T A SYCP2 Silent p.A248A 0.18 TCGA-73-7498-01 20 8709754 8709754 C A PLCB1 Silent p.S607S 0.42 TCGA-73-7498-01 21 45671573 45671575 CTC - DNMT3L In_Frame_Del p.E234del 0.35 TCGA-73-7498-01 22 16267070 16267070 C A POTEH Missense_Mutation p.G460V 0.07 deleterious(0.01) possibly_damaging(0.556) TCGA-73-7498-01 22 23248770 23248770 G A IGLC3 Missense_Mutation p.C87Y 0.11 probably_damaging(0.999) TCGA-73-7498-01 22 38374042 38374042 G T SOX10 Silent p.R177R 0.18 TCGA-73-7498-01 22 45198039 45198039 G T ARHGAP8 Silent p.L176L 0.36 TCGA-73-7498-01 2 108478151 108478152 AA - RGPD4 Frame_Shift_Del p.K721Dfs*4 0.09 TCGA-73-7498-01 2 136562358 136562358 C A LCT Silent p.L1481L 0.22 TCGA-73-7498-01 2 1481007 1481007 C G TPO Missense_Mutation p.F323L 0.29 deleterious(0.01) possibly_damaging(0.903) TCGA-73-7498-01 2 154335041 154335041 G T RPRM Silent p.G13G 0.40 TCGA-73-7498-01 2 204161566 204161566 A G CYP20A1 Missense_Mutation p.T442A 0.39 tolerated(0.46) benign(0.008) TCGA-73-7498-01 2 24299194 24299194 A G SF3B14 5'UTR 0.25 TCGA-73-7498-01 3 10413716 10413716 T G ATP2B2 Missense_Mutation p.N479T 0.17 deleterious(0.01) benign(0.209) TCGA-73-7498-01 3 121980372 121980372 C T CASR Intron 0.18 TCGA-73-7498-01 3 182994678 182994678 C T MCF2L2 Missense_Mutation p.G615E 0.13 tolerated(0.97) benign(0) TCGA-73-7498-01 3 38913746 38913746 A G SCN11A Missense_Mutation p.S1145P 0.04 deleterious(0.03) benign(0.046) TCGA-73-7498-01 3 43122492 43122492 G C POMGNT2 Silent p.P144P 0.11 TCGA-73-7498-01 3 48475178 48475178 C G CCDC51 Missense_Mutation p.R139P 0.27 deleterious(0) probably_damaging(0.995) TCGA-73-7498-01 3 77666736 77666736 G T ROBO2 Silent p.L1138L 0.17 TCGA-73-7498-01 3 86996106 86996106 C A VGLL3 3'UTR 0.16 TCGA-73-7498-01 4 138451510 138451510 C A PCDH18 Missense_Mutation p.G578V 0.29 tolerated(0.55) benign(0) TCGA-73-7498-01 4 178881994 178881994 C T LINC01098 5'UTR 0.25 TCGA-73-7498-01 4 46967068 46967068 G C GABRA4 Silent p.A351A 0.22 TCGA-73-7498-01 4 46967069 46967069 G C GABRA4 Missense_Mutation p.A351G 0.24 tolerated(0.1) probably_damaging(0.969) TCGA-73-7498-01 4 47939655 47939656 GG TGT CNGA1 Frame_Shift_Ins p.F354Lfs*39 0.22 TCGA-73-7498-01 4 55958874 55958874 T C KDR Silent p.E993E 0.30 TCGA-73-7498-01 4 9785025 9785025 G T DRD5 Missense_Mutation p.D458Y 0.24 deleterious(0.01) possibly_damaging(0.886) TCGA-73-7498-01 5 132387929 132387929 C T HSPA4 5'UTR 0.24 TCGA-73-7498-01 5 140256740 140256740 C T PCDHA12 Silent p.N561N 0.29 TCGA-73-7498-01 5 140475913 140475913 C A PCDHB2 Silent p.G513G 0.10 TCGA-73-7498-01 5 140605063 140605063 G C PCDHB14 Silent p.L662L 0.30 TCGA-73-7498-01 5 142779500 142779500 C A NR3C1 Missense_Mutation p.C302F 0.31 deleterious(0.01) probably_damaging(1) TCGA-73-7498-01 5 176317672 176317672 C A HK3 Silent p.V198V 0.26 TCGA-73-7498-01 5 33947279 33947279 C T SLC45A2 Missense_Mutation p.E453K 0.32 tolerated(0.37) benign(0.125) TCGA-73-7498-01 6 41168809 41168809 G A TREML2 5'UTR 0.40 TCGA-73-7498-01 6 44218146 44218146 A T HSP90AB1 Missense_Mutation p.D256V 0.52 tolerated(0.09) benign(0.012) TCGA-73-7498-01 6 54191662 54191662 G A TINAG Missense_Mutation p.R191H 0.27 deleterious(0.03) benign(0.062) TCGA-73-7498-01 6 56347530 56347530 C T DST Missense_Mutation p.C4495Y 0.10 probably_damaging(0.987) TCGA-73-7498-01 6 56510705 56510705 G A DST 5'Flank 0.40 TCGA-73-7498-01 7 24784262 24784262 C T DFNA5 Missense_Mutation p.R108H 0.22 tolerated(0.36) benign(0.001) TCGA-73-7498-01 7 27185328 27185328 G A HOXA6 Silent p.I217I 0.32 TCGA-73-7498-01 7 33380516 33380516 G T BBS9 Missense_Mutation p.W402C 0.16 tolerated(0.15) possibly_damaging(0.579) TCGA-73-7498-01 7 48634392 48634392 G C ABCA13 Silent p.A4909A 0.21 TCGA-73-7498-01 7 96651397 96651397 G T DLX5 Intron 0.50 TCGA-73-7498-01 7 99700336 99700336 C T AP4M1 Silent p.S62S 0.09 TCGA-73-7498-01 8 101152954 101152954 G C FBXO43 Missense_Mutation p.L510V 0.20 deleterious(0) possibly_damaging(0.666) TCGA-73-7498-01 8 108913190 108913190 C G RSPO2 3'UTR 0.22 TCGA-73-7498-01 8 123964468 123964468 G A ZHX2 Missense_Mutation p.G240R 0.18 deleterious(0.04) probably_damaging(0.921) TCGA-73-7498-01 8 124253515 124253515 C T C8orf76 Silent p.R24R 0.21 TCGA-73-7498-01 8 124658139 124658139 C T KLHL38 Missense_Mutation p.R529Q 0.17 deleterious_low_confidence(0) possibly_damaging(0.698) TCGA-73-7498-01 8 40438694 40438694 G T ZMAT4 Missense_Mutation p.H222N 0.40 deleterious(0) probably_damaging(0.997) TCGA-73-7498-01 8 66988902 66988902 G T DNAJC5B Missense_Mutation p.A43S 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-73-7498-01 8 77764153 77764153 G T ZFHX4 Missense_Mutation p.D1666Y 0.38 probably_damaging(0.934) TCGA-73-7498-01 9 133760830 133760830 C T ABL1 Silent p.A1070A 0.10 TCGA-73-7498-01 9 134107673 134107673 T G NUP214 Missense_Mutation p.F2073V 0.18 unknown(0) TCGA-73-7498-01 9 36170349 36170349 C T CCIN Missense_Mutation p.L284F 0.36 deleterious(0.01) probably_damaging(0.988) TCGA-73-7498-01 9 84533021 84533021 C A SPATA31D5P RNA 0.13 TCGA-73-7498-01 9 94487237 94487237 C A ROR2 Silent p.A513A 0.34 TCGA-73-7498-01 X 100509869 100509869 G T DRP2 Missense_Mutation p.W712C 0.08 tolerated(0.09) benign(0.161) TCGA-73-7498-01 X 10085253 10085253 C T WWC3 Missense_Mutation p.S385F 0.25 deleterious(0.02) probably_damaging(0.947) TCGA-73-7498-01 X 10094316 10094316 A G WWC3 Silent p.S692S 0.24 TCGA-73-7498-01 X 106171474 106171474 C A CLDN2 Missense_Mutation p.L6I 0.36 tolerated(0.17) unknown(0) TCGA-73-7498-01 X 109561127 109561127 C A AMMECR1 Missense_Mutation p.G58V 0.33 deleterious_low_confidence(0.04) benign(0.063) TCGA-73-7498-01 X 123224763 123224763 A G STAG2 Missense_Mutation p.E1176G 0.23 deleterious_low_confidence(0.04) possibly_damaging(0.823) TCGA-73-7498-01 X 13337381 13337381 C G ATXN3L Missense_Mutation p.D225H 0.32 deleterious(0) possibly_damaging(0.776) TCGA-73-7498-01 X 22132589 22132589 C T PHEX Missense_Mutation p.T396I 0.23 deleterious(0) probably_damaging(0.999) TCGA-73-7498-01 X 24753519 24753519 G T POLA1 Missense_Mutation p.V607L 0.30 tolerated(0.48) benign(0.002) TCGA-73-7498-01 X 27999395 27999395 C A DCAF8L1 Silent p.L19L 0.19 TCGA-73-7498-01 X 47039816 47039816 A T RBM10 Splice_Site p.X387_splice 0.14 TCGA-73-7498-01 X 47774812 47774812 G C ZNF81 Missense_Mutation p.S256T 0.32 tolerated(0.17) benign(0.024) TCGA-73-7498-01 X 53578038 53578038 C A HUWE1 Missense_Mutation p.R3070L 0.24 possibly_damaging(0.569) TCGA-73-7498-01 X 53578301 53578301 C A HUWE1 Missense_Mutation p.V3008L 0.25 benign(0.299) TCGA-73-7498-01 X 53611279 53611279 G T HUWE1 Silent p.R1676R 0.26 TCGA-73-7498-01 X 5810830 5810830 G T NLGN4X 3'UTR 0.27 TCGA-73-7498-01 X 77275738 77275738 C A ATP7A Intron 0.22 TCGA-73-7499-01 10 128193347 128193347 G C C10orf90 Missense_Mutation p.T141S 0.13 deleterious(0.04) probably_damaging(0.953) TCGA-73-7499-01 10 69684945 69684945 C G HERC4 Splice_Site p.X955_splice 0.32 TCGA-73-7499-01 10 99330148 99330148 C T UBTD1 Silent p.I184I 0.14 TCGA-73-7499-01 12 117685288 117685288 G C NOS1 Missense_Mutation p.H930Q 0.15 tolerated(0.29) possibly_damaging(0.891) TCGA-73-7499-01 12 54797513 54797513 G A ITGA5 Missense_Mutation p.R558W 0.15 deleterious(0) probably_damaging(0.989) TCGA-73-7499-01 12 81688716 81688716 T C PPFIA2 Silent p.R941R 0.12 TCGA-73-7499-01 14 59113480 59113480 C T DACT1 Silent p.Y713Y 0.55 TCGA-73-7499-01 15 51791717 51791717 G T DMXL2 Missense_Mutation p.S1235Y 0.07 deleterious(0.01) possibly_damaging(0.828) TCGA-73-7499-01 15 52356644 52356644 G C MAPK6 Missense_Mutation p.S538T 0.44 deleterious_low_confidence(0.03) probably_damaging(0.98) TCGA-73-7499-01 16 55719074 55719074 C G SLC6A2 Missense_Mutation p.H222D 0.09 tolerated(0.07) possibly_damaging(0.904) TCGA-73-7499-01 16 69693761 69693761 C G NFAT5 Missense_Mutation p.S443C 0.12 probably_damaging(0.936) TCGA-73-7499-01 16 72132853 72132853 C T DHX38 Silent p.D264D 0.13 TCGA-73-7499-01 17 26951367 26951367 A T KIAA0100 Missense_Mutation p.F1546I 0.25 deleterious(0.05) benign(0.118) TCGA-73-7499-01 17 35830541 35830541 G A TADA2A Silent p.E311E 0.15 TCGA-73-7499-01 17 37565808 37565808 C G MED1 Missense_Mutation p.S889T 0.19 deleterious_low_confidence(0.01) probably_damaging(0.937) TCGA-73-7499-01 17 40855782 40855782 C A EZH1 Missense_Mutation p.V692L 0.09 deleterious(0.01) probably_damaging(0.992) TCGA-73-7499-01 17 71027795 71027795 G A SLC39A11 Missense_Mutation p.S69F 0.42 deleterious(0.02) possibly_damaging(0.738) TCGA-73-7499-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.37 TCGA-73-7499-01 19 15795668 15795668 G C CYP4F12 Missense_Mutation p.E321Q 0.04 deleterious(0.01) possibly_damaging(0.89) TCGA-73-7499-01 19 45262694 45262694 C T BCL3 Missense_Mutation p.S396F 0.07 tolerated(0.09) unknown(0) TCGA-73-7499-01 19 52496695 52496695 C T ZNF615 Missense_Mutation p.C556Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-73-7499-01 19 53014946 53014946 C A ZNF578 Missense_Mutation p.H438N 0.06 tolerated(0.17) benign(0.114) TCGA-73-7499-01 19 55814114 55814114 C T BRSK1 Missense_Mutation p.R303W 0.07 deleterious(0.01) possibly_damaging(0.689) TCGA-73-7499-01 1 11595166 11595166 C A PTCHD2 Missense_Mutation p.L1212I 0.11 deleterious(0.01) benign(0.101) TCGA-73-7499-01 1 117910819 117910819 C T MAN1A2 Missense_Mutation p.A5V 0.12 deleterious_low_confidence(0.01) benign(0.182) TCGA-73-7499-01 1 12069782 12069782 A C MFN2 Silent p.R735R 0.10 TCGA-73-7499-01 1 13940881 13940881 A G PDPN Missense_Mutation p.M229V 0.17 tolerated(1) benign(0.005) TCGA-73-7499-01 1 150312943 150312943 C G PRPF3 Silent p.L424L 0.04 TCGA-73-7499-01 1 153520101 153520101 G A S100A3 3'UTR 0.08 TCGA-73-7499-01 1 158627401 158627401 G A SPTA1 Nonsense_Mutation p.R891* 0.24 TCGA-73-7499-01 1 207196808 207196808 T C C1orf116 Missense_Mutation p.I101V 0.23 tolerated(0.81) benign(0.011) TCGA-73-7499-01 1 22173972 22173972 T A HSPG2 Missense_Mutation p.H2680L 0.24 benign(0.002) TCGA-73-7499-01 1 233296064 233296064 A T PCNXL2 Missense_Mutation p.L1161H 0.10 deleterious(0) probably_damaging(0.992) TCGA-73-7499-01 1 237791371 237791371 G A RYR2 Missense_Mutation p.R2144H 0.34 benign(0.125) TCGA-73-7499-01 1 242035540 242035543 GAAG AAA EXO1 Frame_Shift_Del p.E492Kfs*29 0.16 TCGA-73-7499-01 1 247752444 247752444 G A OR2G2 Missense_Mutation p.M261I 0.24 tolerated(0.12) benign(0.044) TCGA-73-7499-01 1 247921555 247921555 C G OR1C1 Missense_Mutation p.D52H 0.05 deleterious(0.01) probably_damaging(0.993) TCGA-73-7499-01 1 47406939 47406939 G T CYP4A11 Missense_Mutation p.S56Y 0.17 deleterious(0.01) possibly_damaging(0.707) TCGA-73-7499-01 1 67263711 67263711 C G INSL5 Missense_Mutation p.L131F 0.13 deleterious(0.01) probably_damaging(0.98) TCGA-73-7499-01 20 40049523 40049523 C G CHD6 Missense_Mutation p.E1918Q 0.04 deleterious_low_confidence(0.02) benign(0.147) TCGA-73-7499-01 21 15326403 15326403 G C ANKRD20A11P RNA 0.05 TCGA-73-7499-01 21 37633010 37633010 T C DOPEY2 Silent p.F1765F 0.30 TCGA-73-7499-01 21 43239971 43239971 C T PRDM15 Missense_Mutation p.V1109I 0.37 tolerated(0.83) benign(0.006) TCGA-73-7499-01 2 112777075 112777075 G T MERTK Missense_Mutation p.R722L 0.44 deleterious(0) probably_damaging(0.95) TCGA-73-7499-01 2 152363473 152363473 C T NEB Missense_Mutation p.D7836N 0.39 benign(0.293) TCGA-73-7499-01 2 27587224 27587224 G A EIF2B4 3'Flank 0.30 TCGA-73-7499-01 2 73676583 73676583 G A ALMS1 Missense_Mutation p.E976K 0.12 benign(0.391) TCGA-73-7499-01 3 111766638 111766638 G C TMPRSS7 Silent p.P135P 0.12 TCGA-73-7499-01 3 113115417 113115417 G A WDR52 Missense_Mutation p.A576V 0.06 deleterious(0.01) benign(0.058) TCGA-73-7499-01 3 122145776 122145776 G A KPNA1 3'UTR 0.25 TCGA-73-7499-01 3 126138959 126138959 A G CCDC37 Silent p.T323T 0.09 TCGA-73-7499-01 3 167277997 167277997 C T WDR49 Missense_Mutation p.G169E 0.20 deleterious(0.05) benign(0.194) TCGA-73-7499-01 3 171394539 171394539 G A PLD1 Missense_Mutation p.A694V 0.42 deleterious(0) probably_damaging(0.947) TCGA-73-7499-01 3 178917494 178917494 G T PIK3CA Missense_Mutation p.M123I 0.35 tolerated(0.53) benign(0.006) TCGA-73-7499-01 3 178917495 178917495 C G PIK3CA Missense_Mutation p.P124A 0.33 tolerated(0.25) benign(0.017) TCGA-73-7499-01 3 186383964 186383964 C T HRG Silent p.F48F 0.04 TCGA-73-7499-01 3 38908865 38908865 G A SCN11A Silent p.L1300L 0.28 TCGA-73-7499-01 3 58148834 58148834 G A FLNB Intron 0.11 TCGA-73-7499-01 3 93617331 93617331 C A PROS1 Missense_Mutation p.K270N 0.29 deleterious(0) benign(0.078) TCGA-73-7499-01 4 75245174 75245174 T C EREG Missense_Mutation p.L26P 0.18 deleterious(0) probably_damaging(0.971) TCGA-73-7499-01 4 81123237 81123237 C T PRDM8 Silent p.G207G 0.10 TCGA-73-7499-01 5 125912887 125912887 C T ALDH7A1 Silent p.L178L 0.12 TCGA-73-7499-01 5 140530708 140530708 C A PCDHB6 Missense_Mutation p.F290L 0.35 tolerated(0.07) possibly_damaging(0.497) TCGA-73-7499-01 5 141336054 141336054 C T PCDH12 Missense_Mutation p.D455N 0.04 deleterious(0) probably_damaging(1) TCGA-73-7499-01 5 23527198 23527198 G A PRDM9 Silent p.R667R 0.22 TCGA-73-7499-01 5 40692463 40692463 T G PTGER4 Missense_Mutation p.S484A 0.28 deleterious_low_confidence(0.05) benign(0.08) TCGA-73-7499-01 6 118832571 118832571 G C CEP85L Missense_Mutation p.Q386E 0.40 deleterious(0.04) probably_damaging(0.997) TCGA-73-7499-01 6 150064827 150064827 C T NUP43 Missense_Mutation p.A90T 0.22 tolerated(1) benign(0.001) TCGA-73-7499-01 7 100686290 100686290 C T MUC17 Missense_Mutation p.R3865C 0.12 benign(0.006) TCGA-73-7499-01 7 17838335 17838335 C G SNX13 Missense_Mutation p.A831P 0.29 deleterious(0) probably_damaging(0.97) TCGA-73-7499-01 7 44274242 44274242 A T CAMK2B Missense_Mutation p.V352D 0.33 deleterious_low_confidence(0.01) benign(0.068) TCGA-73-7499-01 8 109491251 109491251 C T EMC2 Missense_Mutation p.A240V 0.18 tolerated(0.12) benign(0.007) TCGA-73-7499-01 8 144892864 144892864 C G SCRIB Missense_Mutation p.E466Q 0.05 probably_damaging(0.957) TCGA-73-7499-01 8 27145561 27145561 G A TRIM35 Missense_Mutation p.R330C 0.04 deleterious(0) probably_damaging(0.912) TCGA-73-7499-01 8 73848794 73848794 T C KCNB2 Missense_Mutation p.C402R 0.20 deleterious(0) probably_damaging(0.997) TCGA-73-7499-01 9 118950344 118950344 C A PAPPA Missense_Mutation p.L443M 0.25 tolerated(0.13) possibly_damaging(0.665) TCGA-73-7499-01 9 119903720 119903720 C G ASTN2 Intron 0.22 TCGA-73-7499-01 9 125563288 125563288 G A OR1K1 Missense_Mutation p.R296H 0.22 tolerated(0.07) benign(0.001) TCGA-73-7499-01 9 128691974 128691974 G T PBX3 Missense_Mutation p.R186L 0.26 deleterious(0) probably_damaging(0.991) TCGA-73-7499-01 X 151899930 151899930 G C MAGEA12 Missense_Mutation p.L291V 0.07 tolerated(0.19) benign(0.004) TCGA-73-7499-01 X 48419138 48419138 G A TBC1D25 Silent p.G614G 0.07 TCGA-73-7499-01 X 48545338 48545338 G T WAS Missense_Mutation p.G243V 0.50 deleterious(0) probably_damaging(0.999) TCGA-73-7499-01 X 48896669 48896669 C T TFE3 Missense_Mutation p.R166H 0.13 tolerated(0.24) possibly_damaging(0.522) TCGA-73-7499-01 X 77224607 77224607 C G PGAM4 Missense_Mutation p.E177Q 0.10 tolerated(0.2) benign(0.036) TCGA-73-A9RS-01 10 102027336 102027336 C A CWF19L1 Silent p.P5P 0.27 TCGA-73-A9RS-01 10 104831562 104831562 C T CNNM2 Silent p.V733V 0.23 TCGA-73-A9RS-01 10 106163596 106163596 G T CCDC147 Nonsense_Mutation p.E717* 0.15 TCGA-73-A9RS-01 10 106976768 106976768 C T SORCS3 Silent p.P874P 0.18 TCGA-73-A9RS-01 10 108380208 108380208 C A SORCS1 Missense_Mutation p.W925L 0.25 deleterious(0.01) possibly_damaging(0.856) TCGA-73-A9RS-01 10 112350219 112350219 G T SMC3 Missense_Mutation p.R520L 0.31 deleterious(0.04) benign(0.009) TCGA-73-A9RS-01 10 115609811 115609811 T A DCLRE1A Missense_Mutation p.L351F 0.34 tolerated(0.44) benign(0.009) TCGA-73-A9RS-01 10 115963958 115963958 G T TDRD1 Missense_Mutation p.D370Y 0.37 deleterious(0) possibly_damaging(0.466) TCGA-73-A9RS-01 10 118030332 118030332 A T GFRA1 Splice_Site p.X112_splice 0.14 TCGA-73-A9RS-01 10 118030535 118030535 T C GFRA1 Missense_Mutation p.K45E 0.19 deleterious(0.01) possibly_damaging(0.698) TCGA-73-A9RS-01 10 11805415 11805415 G T ECHDC3 Missense_Mutation p.D262Y 0.18 deleterious(0) probably_damaging(0.97) TCGA-73-A9RS-01 10 118434442 118434442 C A HSPA12A Silent p.L626L 0.21 TCGA-73-A9RS-01 10 118443419 118443419 C G HSPA12A Missense_Mutation p.E240Q 0.41 deleterious(0) probably_damaging(0.983) TCGA-73-A9RS-01 10 119014850 119014850 C T SLC18A2 Silent p.L255L 0.29 TCGA-73-A9RS-01 10 12001227 12001227 G T UPF2 Silent p.L771L 0.13 TCGA-73-A9RS-01 10 124214334 124214334 G T ARMS2 Missense_Mutation p.V31L 0.24 tolerated_low_confidence(0.06) benign(0) TCGA-73-A9RS-01 10 125526657 125526657 C A CPXM2 Silent p.L437L 0.20 TCGA-73-A9RS-01 10 129906053 129906053 C T MKI67 Missense_Mutation p.E1351K 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-73-A9RS-01 10 13217674 13217674 C G MCM10 Missense_Mutation p.R254G 0.18 deleterious(0) probably_damaging(0.99) TCGA-73-A9RS-01 10 132944879 132944879 G T TCERG1L Missense_Mutation p.P360Q 0.14 deleterious(0) probably_damaging(0.996) TCGA-73-A9RS-01 10 132944880 132944880 G T TCERG1L Missense_Mutation p.P360T 0.14 deleterious(0) probably_damaging(0.995) TCGA-73-A9RS-01 10 134145112 134145112 C T LRRC27 5'Flank 0.39 TCGA-73-A9RS-01 10 14816532 14816532 C G FAM107B Missense_Mutation p.G44A 0.22 deleterious_low_confidence(0) benign(0.008) TCGA-73-A9RS-01 10 17110763 17110763 T A CUBN Missense_Mutation p.S878C 0.54 deleterious(0.01) probably_damaging(0.95) TCGA-73-A9RS-01 10 17275823 17275823 G T VIM Missense_Mutation p.D259Y 0.08 deleterious(0) probably_damaging(0.992) TCGA-73-A9RS-01 10 23295909 23295909 G T ARMC3 Missense_Mutation p.V610F 0.54 tolerated(0.71) benign(0.01) TCGA-73-A9RS-01 10 26562572 26562572 G A GAD2 Nonsense_Mutation p.W367* 0.47 TCGA-73-A9RS-01 10 27389088 27389088 C G ANKRD26 Silent p.A56A 0.16 TCGA-73-A9RS-01 10 28224001 28224001 T A ARMC4 Missense_Mutation p.Q811H 0.27 tolerated(0.05) benign(0.337) TCGA-73-A9RS-01 10 28824547 28824547 G C WAC Missense_Mutation p.K45N 0.18 deleterious(0) probably_damaging(0.987) TCGA-73-A9RS-01 10 31138073 31138073 C A ZNF438 Nonsense_Mutation p.E421* 0.25 TCGA-73-A9RS-01 10 38344224 38344224 G C ZNF33A Missense_Mutation p.G391A 0.15 tolerated(0.1) possibly_damaging(0.461) TCGA-73-A9RS-01 10 38406994 38406994 G T ZNF37A Silent p.G305G 0.25 TCGA-73-A9RS-01 10 43088331 43088331 C A ZNF33B Silent p.G689G 0.27 TCGA-73-A9RS-01 10 45488741 45488741 G T RASSF4 Missense_Mutation p.M310I 0.27 tolerated(1) benign(0.006) TCGA-73-A9RS-01 10 46248639 46248639 C T FAM21C Silent p.F378F 0.50 TCGA-73-A9RS-01 10 48416445 48416445 C G GDF2 Silent p.V83V 0.26 TCGA-73-A9RS-01 10 55581991 55581991 G T PCDH15 Nonsense_Mutation p.S1834* 0.34 TCGA-73-A9RS-01 10 55582563 55582563 T A PCDH15 Missense_Mutation p.Q1643H 0.24 deleterious_low_confidence(0) benign(0.021) TCGA-73-A9RS-01 10 55755486 55755486 A T PCDH15 Missense_Mutation p.Y931N 0.31 deleterious(0.03) probably_damaging(1) TCGA-73-A9RS-01 10 55849784 55849784 C A PCDH15 Nonsense_Mutation p.E653* 0.27 TCGA-73-A9RS-01 10 55973749 55973749 G T PCDH15 Missense_Mutation p.L349I 0.23 tolerated(0.12) possibly_damaging(0.844) TCGA-73-A9RS-01 10 58118180 58118180 C A ZWINT Nonstop_Mutation p.*278Lext*12 0.23 TCGA-73-A9RS-01 10 61413486 61413486 C A SLC16A9 Missense_Mutation p.G433V 0.22 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 10 61413487 61413487 C A SLC16A9 Missense_Mutation p.G433W 0.23 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 10 69366788 69366788 C G CTNNA3 Missense_Mutation p.C40S 0.30 tolerated(0.71) benign(0.415) TCGA-73-A9RS-01 10 69905262 69905262 C A MYPN Missense_Mutation p.P370H 0.22 tolerated(0.14) benign(0.014) TCGA-73-A9RS-01 10 71880324 71880324 C G AIFM2 Missense_Mutation p.G149A 0.37 deleterious(0.02) probably_damaging(0.992) TCGA-73-A9RS-01 10 71902532 71902532 C A TYSND1 Missense_Mutation p.A459S 0.23 tolerated(0.21) possibly_damaging(0.517) TCGA-73-A9RS-01 10 72492028 72492028 G T ADAMTS14 Missense_Mutation p.G377V 0.31 deleterious(0) possibly_damaging(0.654) TCGA-73-A9RS-01 10 83635328 83635328 G A NRG3 Missense_Mutation p.G78S 0.30 tolerated(0.41) probably_damaging(0.994) TCGA-73-A9RS-01 10 86001162 86001162 C A LRIT1 Missense_Mutation p.A12S 0.31 tolerated(0.13) benign(0.255) TCGA-73-A9RS-01 10 88683229 88683229 G C BMPR1A Missense_Mutation p.R480P 0.21 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 10 88703349 88703349 G T MMRN2 Missense_Mutation p.L398M 0.18 tolerated(0.07) probably_damaging(0.971) TCGA-73-A9RS-01 10 90497420 90497420 C A LIPK Missense_Mutation p.P233H 0.22 tolerated(0.1) probably_damaging(0.984) TCGA-73-A9RS-01 10 90975768 90975768 T A LIPA Splice_Site p.X299_splice 0.28 TCGA-73-A9RS-01 10 95719213 95719213 G C PIPSL RNA 0.31 TCGA-73-A9RS-01 10 98192563 98192563 C A TLL2 Splice_Site p.X174_splice 0.25 TCGA-73-A9RS-01 10 98192564 98192564 C A TLL2 Missense_Mutation p.G174W 0.27 deleterious(0) probably_damaging(0.998) TCGA-73-A9RS-01 10 98763890 98763890 G A SLIT1 Missense_Mutation p.P1267L 0.32 deleterious(0.01) probably_damaging(0.99) TCGA-73-A9RS-01 11 100141944 100141944 C A CNTN5 Missense_Mutation p.P762Q 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-73-A9RS-01 11 1084269 1084269 G T MUC2 Missense_Mutation p.V801L 0.57 possibly_damaging(0.625) TCGA-73-A9RS-01 11 113660180 113660180 C A ATF4P4 RNA 0.29 TCGA-73-A9RS-01 11 113816878 113816878 G T HTR3B 3'UTR 0.21 TCGA-73-A9RS-01 11 118495647 118495647 C A PHLDB1 Intron 0.30 TCGA-73-A9RS-01 11 118495653 118495653 G T PHLDB1 Missense_Mutation p.C120F 0.30 deleterious(0) probably_damaging(0.991) TCGA-73-A9RS-01 11 11952290 11952290 G C USP47 Missense_Mutation p.R480T 0.30 deleterious(0.01) possibly_damaging(0.854) TCGA-73-A9RS-01 11 119983148 119983148 C G TRIM29 Missense_Mutation p.G581R 0.19 deleterious_low_confidence(0) possibly_damaging(0.609) TCGA-73-A9RS-01 11 120310839 120310839 A T ARHGEF12 Missense_Mutation p.D334V 0.31 deleterious(0.02) benign(0.13) TCGA-73-A9RS-01 11 123474233 123474233 G T GRAMD1B Missense_Mutation p.D241Y 0.14 deleterious(0.01) probably_damaging(0.924) TCGA-73-A9RS-01 11 123676771 123676771 A C OR6M1 Missense_Mutation p.M96R 0.18 deleterious(0) benign(0.106) TCGA-73-A9RS-01 11 123886543 123886543 G T OR10G4 Missense_Mutation p.G88C 0.21 tolerated(0.05) probably_damaging(0.99) TCGA-73-A9RS-01 11 123900936 123900936 G T OR10G8 Nonsense_Mutation p.G203* 0.21 TCGA-73-A9RS-01 11 123909327 123909327 G T OR10G7 Missense_Mutation p.P128T 0.84 deleterious(0) possibly_damaging(0.862) TCGA-73-A9RS-01 11 124266666 124266666 G T OR8B3 Silent p.V194V 0.24 TCGA-73-A9RS-01 11 124953751 124953751 C T SLC37A2 Silent p.L339L 0.16 TCGA-73-A9RS-01 11 128680595 128680595 T - FLI1 Frame_Shift_Del p.Y358Tfs*41 0.28 TCGA-73-A9RS-01 11 128786524 128786524 G T KCNJ5 Silent p.L386L 0.22 TCGA-73-A9RS-01 11 128843156 128843156 C A ARHGAP32 Missense_Mutation p.G1068V 0.44 deleterious_low_confidence(0.04) benign(0.424) TCGA-73-A9RS-01 11 129775587 129775587 T A PRDM10 Silent p.T1075T 0.22 TCGA-73-A9RS-01 11 129992217 129992217 C A APLP2 Missense_Mutation p.A244E 0.38 tolerated(0.71) benign(0.174) TCGA-73-A9RS-01 11 129992218 129992218 A T APLP2 Silent p.A244A 0.39 TCGA-73-A9RS-01 11 130070026 130070026 G T ST14 Missense_Mutation p.G663V 0.16 tolerated(0.4) benign(0.017) TCGA-73-A9RS-01 11 130275315 130275315 G T ADAMTS8 3'UTR 0.50 TCGA-73-A9RS-01 11 130278732 130278733 GG T ADAMTS8 Frame_Shift_Del p.S618Yfs*25 0.17 TCGA-73-A9RS-01 11 19954737 19954737 C T NAV2 Missense_Mutation p.S339L 0.30 tolerated(0.17) benign(0.001) TCGA-73-A9RS-01 11 19970454 19970454 G T NAV2 Missense_Mutation p.A848S 0.66 tolerated(0.21) probably_damaging(0.997) TCGA-73-A9RS-01 11 22397564 22397564 G A SLC17A6 Missense_Mutation p.G404D 0.29 deleterious(0) possibly_damaging(0.856) TCGA-73-A9RS-01 11 2610084 2610084 G T KCNQ1 Missense_Mutation p.V465L 0.56 tolerated(0.15) benign(0.403) TCGA-73-A9RS-01 11 30974109 30974109 G T DCDC1 Silent p.A866A 0.62 TCGA-73-A9RS-01 11 31815655 31815655 C T PAX6 Silent p.E244E 0.33 TCGA-73-A9RS-01 11 33689610 33689610 C A KIAA1549L Missense_Mutation p.N1820K 0.59 deleterious(0) probably_damaging(0.998) TCGA-73-A9RS-01 11 34664242 34664242 C T EHF Missense_Mutation p.P44L 0.55 deleterious(0.01) benign(0.193) TCGA-73-A9RS-01 11 44077597 44077597 G T ACCSL Missense_Mutation p.D383Y 0.48 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 11 44193212 44193212 G A EXT2 Missense_Mutation p.A442T 0.25 tolerated(1) benign(0.001) TCGA-73-A9RS-01 11 44297135 44297135 C G ALX4 Silent p.L180L 0.36 TCGA-73-A9RS-01 11 46880579 46880579 C A LRP4 Silent p.T1891T 0.41 TCGA-73-A9RS-01 11 4703976 4703976 A T OR51E2 5'UTR 0.56 TCGA-73-A9RS-01 11 47296404 47296404 G A MADD Missense_Mutation p.G118E 0.11 tolerated(0.35) benign(0.01) TCGA-73-A9RS-01 11 5322406 5322406 G T OR51B4 Missense_Mutation p.F257L 0.64 tolerated(0.73) benign(0.013) TCGA-73-A9RS-01 11 55563205 55563205 C A OR5D14 Missense_Mutation p.H58Q 0.16 deleterious(0.03) benign(0.191) TCGA-73-A9RS-01 11 55999693 55999693 C A OR5T2 Missense_Mutation p.L323F 0.13 deleterious(0.01) benign(0.09) TCGA-73-A9RS-01 11 56086049 56086049 G T OR8K3 Missense_Mutation p.K89N 0.37 deleterious_low_confidence(0.01) benign(0.007) TCGA-73-A9RS-01 11 56185645 56185645 C T OR5R1 Missense_Mutation p.E22K 0.13 deleterious(0.02) benign(0.04) TCGA-73-A9RS-01 11 56258522 56258522 C A OR5M8 Missense_Mutation p.V109F 0.31 deleterious(0) possibly_damaging(0.786) TCGA-73-A9RS-01 11 57263509 57263509 A G SLC43A1 Silent p.N229N 0.29 TCGA-73-A9RS-01 11 57995498 57995498 T A OR10Q1 Missense_Mutation p.T284S 0.17 deleterious(0.04) probably_damaging(0.99) TCGA-73-A9RS-01 11 58170128 58170128 G T OR5B3 Missense_Mutation p.T252N 0.43 deleterious_low_confidence(0.01) probably_damaging(0.955) TCGA-73-A9RS-01 11 6023425 6023425 C T OR56A4 Silent p.L318L 0.25 TCGA-73-A9RS-01 11 62037729 62037729 A T SCGB2A2 Missense_Mutation p.Q14L 0.20 tolerated(1) benign(0) TCGA-73-A9RS-01 11 62400954 62400954 C T GANAB Missense_Mutation p.G220E 0.23 tolerated(0.71) benign(0.007) TCGA-73-A9RS-01 11 62749454 62749454 C G SLC22A6 Silent p.R219R 0.30 TCGA-73-A9RS-01 11 6292494 6292494 G A CCKBR Nonsense_Mutation p.W355* 0.59 TCGA-73-A9RS-01 11 62951240 62951240 C T SLC22A25 Missense_Mutation p.E294K 0.49 tolerated(0.52) benign(0.05) TCGA-73-A9RS-01 11 63486943 63486943 A T RTN3 Missense_Mutation p.E323D 0.17 deleterious(0) possibly_damaging(0.773) TCGA-73-A9RS-01 11 63586303 63586303 A T C11orf84 Missense_Mutation p.T255S 0.55 tolerated_low_confidence(0.17) benign(0.007) TCGA-73-A9RS-01 11 63668467 63668467 C T MARK2 Nonsense_Mutation p.Q343* 0.52 TCGA-73-A9RS-01 11 64085714 64085714 G C PRDX5 Silent p.L9L 0.19 TCGA-73-A9RS-01 11 64567822 64567822 C A MAP4K2 Missense_Mutation p.K256N 0.18 deleterious(0) probably_damaging(0.977) TCGA-73-A9RS-01 11 64575448 64575448 C A MEN1 Missense_Mutation p.G195V 0.15 deleterious(0.02) probably_damaging(0.925) TCGA-73-A9RS-01 11 64666254 64666254 G T ATG2A Missense_Mutation p.Q1509K 0.12 tolerated(0.94) benign(0) TCGA-73-A9RS-01 11 65358012 65358012 T - EHBP1L1 Frame_Shift_Del p.L1411Rfs*31 0.24 TCGA-73-A9RS-01 11 6632201 6632201 G A TAF10 Silent p.A203A 0.44 TCGA-73-A9RS-01 11 66330560 66330560 T C CTSF 3'Flank 0.48 TCGA-73-A9RS-01 11 69924787 69924787 C T ANO1 Silent p.I25I 0.21 TCGA-73-A9RS-01 11 72326157 72326157 G T PDE2A Intron 0.59 TCGA-73-A9RS-01 11 73020831 73020831 G T ARHGEF17 Missense_Mutation p.S383I 0.21 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-73-A9RS-01 11 73584212 73584212 C A COA4 Missense_Mutation p.R71M 0.23 deleterious(0.01) benign(0.322) TCGA-73-A9RS-01 11 74049576 74049576 C G PGM2L1 Missense_Mutation p.R568P 0.21 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 11 763363 763363 G T TALDO1 Missense_Mutation p.G161C 0.57 deleterious(0) probably_damaging(0.998) TCGA-73-A9RS-01 11 7981165 7981165 G A NLRP10 3'UTR 0.55 TCGA-73-A9RS-01 11 8161687 8161687 C A RIC3 Missense_Mutation p.G60C 0.28 deleterious(0.04) probably_damaging(0.985) TCGA-73-A9RS-01 11 92616435 92616435 C G FAT3 Silent p.P4271P 0.19 TCGA-73-A9RS-01 11 92623734 92623734 C G FAT3 Missense_Mutation p.Q4409E 0.57 benign(0.012) TCGA-73-A9RS-01 11 94038874 94038874 C A FOLR4 Silent p.L24L 0.21 TCGA-73-A9RS-01 12 100043146 100043146 C A FAM71C Silent p.S232S 0.39 TCGA-73-A9RS-01 12 100612202 100612202 G T ACTR6 Nonsense_Mutation p.E254* 0.50 TCGA-73-A9RS-01 12 101552026 101552026 C T SLC5A8 Splice_Site p.X570_splice 0.22 TCGA-73-A9RS-01 12 10215697 10215697 A T CLEC9A Missense_Mutation p.R121S 0.26 deleterious(0.01) benign(0.021) TCGA-73-A9RS-01 12 10467269 10467269 C T KLRD1 Intron 0.18 TCGA-73-A9RS-01 12 10787276 10787276 T G STYK1 5'UTR 0.24 TCGA-73-A9RS-01 12 109703289 109703289 C T ACACB Silent p.I2403I 0.48 TCGA-73-A9RS-01 12 111749930 111749930 C G CUX2 Missense_Mutation p.P643A 0.26 deleterious(0.01) probably_damaging(0.947) TCGA-73-A9RS-01 12 111772374 111772374 C T CUX2 Missense_Mutation p.S1019F 0.27 deleterious(0) possibly_damaging(0.519) TCGA-73-A9RS-01 12 111785693 111785693 C G CUX2 Missense_Mutation p.P1342R 0.20 tolerated_low_confidence(0.09) benign(0.001) TCGA-73-A9RS-01 12 116422087 116422087 C G MED13L Missense_Mutation p.D1477H 0.19 deleterious(0) unknown(0) TCGA-73-A9RS-01 12 120613981 120613981 C A GCN1L1 Missense_Mutation p.S293I 0.19 probably_damaging(0.996) TCGA-73-A9RS-01 12 124330195 124330195 C T DNAH10 Silent p.S1685S 0.21 TCGA-73-A9RS-01 12 130839451 130839451 G T PIWIL1 Missense_Mutation p.R397L 0.28 tolerated(0.22) probably_damaging(0.913) TCGA-73-A9RS-01 12 130926975 130926975 C G RIMBP2 Missense_Mutation p.D291H 0.26 deleterious(0.01) possibly_damaging(0.908) TCGA-73-A9RS-01 12 13716664 13716664 C G GRIN2B Missense_Mutation p.G1170R 0.13 tolerated_low_confidence(0.56) possibly_damaging(0.535) TCGA-73-A9RS-01 12 15704528 15704528 C A PTPRO Silent p.A827A 0.23 TCGA-73-A9RS-01 12 1940666 1940666 C T LRTM2 Silent p.H211H 0.38 TCGA-73-A9RS-01 12 21446889 21446889 C A SLCO1A2 Missense_Mutation p.G476V 0.23 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 12 22676471 22676471 C A C2CD5 Missense_Mutation p.G230V 0.51 deleterious(0) probably_damaging(0.986) TCGA-73-A9RS-01 12 26568288 26568288 C A ITPR2 Missense_Mutation p.K2418N 0.08 deleterious(0.03) benign(0.243) TCGA-73-A9RS-01 12 27081821 27081821 G T ASUN Silent p.A106A 0.12 TCGA-73-A9RS-01 12 29514616 29514616 T A ERGIC2 Silent p.T112T 0.11 TCGA-73-A9RS-01 12 3029930 3029930 G T TULP3 Missense_Mutation p.R32M 0.20 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 12 38714870 38714870 G C ALG10B Missense_Mutation p.R426T 0.29 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 12 40693044 40693044 A G LRRK2 Missense_Mutation p.R1161G 0.35 tolerated(0.26) benign(0.003) TCGA-73-A9RS-01 12 41831655 41831655 T A PDZRN4 Intron 0.42 TCGA-73-A9RS-01 12 43777716 43777716 C A ADAMTS20 Missense_Mutation p.G1506V 0.31 tolerated(0.11) probably_damaging(0.97) TCGA-73-A9RS-01 12 45170885 45170885 G A NELL2 Silent p.F284F 0.40 TCGA-73-A9RS-01 12 46285578 46285578 C A ARID2 Silent p.P1646P 0.40 TCGA-73-A9RS-01 12 48110185 48110185 C T ENDOU Missense_Mutation p.E217K 0.31 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 12 49298744 49298744 G T CCDC65 Nonsense_Mutation p.E50* 0.24 TCGA-73-A9RS-01 12 50189471 50189471 C - NCKAP5L Frame_Shift_Del p.I725Yfs*12 0.29 TCGA-73-A9RS-01 12 5154593 5154593 T C KCNA5 Missense_Mutation p.L427S 0.21 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 12 51844721 51844721 C A SLC4A8 Missense_Mutation p.H64Q 0.32 tolerated(0.07) possibly_damaging(0.557) TCGA-73-A9RS-01 12 52793851 52793851 C T KRT82 Missense_Mutation p.G287D 0.37 tolerated(0.23) benign(0.016) TCGA-73-A9RS-01 12 52965778 52965778 C A KRT74 Nonsense_Mutation p.E233* 0.28 TCGA-73-A9RS-01 12 54062980 54062980 C A ATP5G2 Missense_Mutation p.G145V 0.10 deleterious(0.01) possibly_damaging(0.515) TCGA-73-A9RS-01 12 55641682 55641682 C A OR6C74 Missense_Mutation p.T204K 0.35 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-73-A9RS-01 12 56428384 56428384 G T IKZF4 Missense_Mutation p.D343Y 0.39 deleterious(0.03) possibly_damaging(0.836) TCGA-73-A9RS-01 12 5721823 5721823 G T ANO2 Missense_Mutation p.P696T 0.47 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 12 57859419 57859419 C T GLI1 Silent p.G188G 0.26 TCGA-73-A9RS-01 12 57859640 57859640 G C GLI1 Missense_Mutation p.V232L 0.23 deleterious(0.03) benign(0.217) TCGA-73-A9RS-01 12 57873246 57873246 A T ARHGAP9 Intron 0.27 TCGA-73-A9RS-01 12 58009161 58009161 A G ARHGEF25 Intron 0.44 TCGA-73-A9RS-01 12 63544421 63544421 C G AVPR1A Missense_Mutation p.V66L 0.39 tolerated(0.66) benign(0.007) TCGA-73-A9RS-01 12 65138636 65138636 G A GNS Missense_Mutation p.R193W 0.34 deleterious(0.01) possibly_damaging(0.892) TCGA-73-A9RS-01 12 653569 653569 G A B4GALNT3 Missense_Mutation p.R139K 0.17 deleterious(0.03) benign(0.255) TCGA-73-A9RS-01 12 65722350 65722350 A T MSRB3 Missense_Mutation p.Y84F 0.19 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 12 6647133 6647133 C T GAPDH Silent p.L303L 0.30 TCGA-73-A9RS-01 12 70732262 70732262 G A CNOT2 Missense_Mutation p.G314R 0.34 tolerated(0.12) benign(0.441) TCGA-73-A9RS-01 12 70990096 70990096 G T PTPRB Missense_Mutation p.P331T 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-73-A9RS-01 12 72312229 72312229 A G TBC1D15 Splice_Site p.X518_splice 0.19 TCGA-73-A9RS-01 12 7244089 7244089 C A C1R Missense_Mutation p.D63Y 0.31 deleterious(0) probably_damaging(0.979) TCGA-73-A9RS-01 12 76763503 76763503 C A OSBPL8 Missense_Mutation p.R718S 0.30 deleterious(0) possibly_damaging(0.527) TCGA-73-A9RS-01 12 76763504 76763504 C G OSBPL8 Missense_Mutation p.R718T 0.30 deleterious(0) possibly_damaging(0.688) TCGA-73-A9RS-01 12 78225363 78225363 C A NAV3 Missense_Mutation p.P41H 0.36 tolerated_low_confidence(0.09) benign(0.404) TCGA-73-A9RS-01 12 78515962 78515962 C G NAV3 Missense_Mutation p.S1331C 0.17 deleterious(0.01) probably_damaging(0.967) TCGA-73-A9RS-01 12 83324215 83324215 G T TMTC2 Missense_Mutation p.G497C 0.21 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 12 86383184 86383184 A G MGAT4C Silent p.Y47Y 0.19 TCGA-73-A9RS-01 12 9313676 9313676 G T PZP Missense_Mutation p.P942Q 0.37 deleterious(0) probably_damaging(0.996) TCGA-73-A9RS-01 12 939313 939313 G T WNK1 Missense_Mutation p.R433L 0.39 deleterious(0) unknown(0) TCGA-73-A9RS-01 13 101315371 101315371 C A TMTC4 Silent p.L133L 0.13 TCGA-73-A9RS-01 13 101760061 101760061 G T NALCN Missense_Mutation p.A815E 0.16 deleterious(0) probably_damaging(0.998) TCGA-73-A9RS-01 13 101797138 101797138 G T NALCN Missense_Mutation p.P650H 0.21 deleterious(0.01) probably_damaging(0.96) TCGA-73-A9RS-01 13 102051472 102051472 G - NALCN Frame_Shift_Del p.R4Gfs*52 0.21 TCGA-73-A9RS-01 13 102105091 102105091 C A ITGBL1 5'UTR 0.53 TCGA-73-A9RS-01 13 103514675 103514675 G - BIVM-ERCC5 Frame_Shift_Del p.R819Efs*9 0.33 TCGA-73-A9RS-01 13 108861523 108861523 G A LIG4 Silent p.Y698Y 0.24 TCGA-73-A9RS-01 13 109438062 109438062 C G MYO16 Missense_Mutation p.S174C 0.41 tolerated(0.21) benign(0.013) TCGA-73-A9RS-01 13 109672116 109672116 G T MYO16 Nonsense_Mutation p.E863* 0.44 TCGA-73-A9RS-01 13 110829304 110829304 C A COL4A1 Missense_Mutation p.G933C 0.19 probably_damaging(1) TCGA-73-A9RS-01 13 20024286 20024286 G T TPTE2 Silent p.T301T 0.20 TCGA-73-A9RS-01 13 20325444 20325444 T A PSPC1 Missense_Mutation p.R312W 0.24 tolerated(0.05) possibly_damaging(0.662) TCGA-73-A9RS-01 13 23853519 23853519 A G SGCG Missense_Mutation p.Q136R 0.21 tolerated(0.32) benign(0.143) TCGA-73-A9RS-01 13 25266592 25266592 G T ATP12A Missense_Mutation p.R371L 0.19 deleterious(0) possibly_damaging(0.661) TCGA-73-A9RS-01 13 29598877 29598877 G T MTUS2 Missense_Mutation p.Q24H 0.39 deleterious(0.01) possibly_damaging(0.874) TCGA-73-A9RS-01 13 29599198 29599198 G T MTUS2 Silent p.L131L 0.15 TCGA-73-A9RS-01 13 33629277 33629277 G T KL Missense_Mutation p.G475V 0.24 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 13 36686183 36686183 G T DCLK1 Missense_Mutation p.F182L 0.24 deleterious(0.01) unknown(0) TCGA-73-A9RS-01 13 38158978 38158978 G T POSTN Missense_Mutation p.T328K 0.22 tolerated(0.14) possibly_damaging(0.593) TCGA-73-A9RS-01 13 39451312 39451312 A G FREM2 Missense_Mutation p.K2868R 0.25 deleterious(0.03) possibly_damaging(0.686) TCGA-73-A9RS-01 13 39918037 39918037 C A LHFP 3'UTR 0.15 TCGA-73-A9RS-01 13 39918038 39918038 C T LHFP 3'UTR 0.16 TCGA-73-A9RS-01 13 46287512 46287512 C A SPERT Missense_Mutation p.P118T 0.25 tolerated(0.29) probably_damaging(0.983) TCGA-73-A9RS-01 13 46287513 46287513 C A SPERT Missense_Mutation p.P118Q 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-73-A9RS-01 13 52593196 52593196 G T ALG11 Silent p.V64V 0.26 TCGA-73-A9RS-01 13 53624266 53624266 G T OLFM4 Missense_Mutation p.R298I 0.22 deleterious(0.01) possibly_damaging(0.795) TCGA-73-A9RS-01 13 86368043 86368043 G T SLITRK6 3'UTR 0.41 TCGA-73-A9RS-01 13 88328808 88328808 C G SLITRK5 Missense_Mutation p.L389V 0.17 deleterious(0) probably_damaging(0.935) TCGA-73-A9RS-01 14 105452896 105452896 C T C14orf79 Missense_Mutation p.P43L 0.61 tolerated(0.35) benign(0.058) TCGA-73-A9RS-01 14 106621997 106621997 A G IGHV3-16 Missense_Mutation p.V83A 0.60 deleterious_low_confidence(0.02) possibly_damaging(0.662) TCGA-73-A9RS-01 14 107048771 107048771 C A IGHV3-53 Missense_Mutation p.K83N 0.49 deleterious_low_confidence(0.01) benign(0.308) TCGA-73-A9RS-01 14 107131132 107131132 C A IGHV3-66 Missense_Mutation p.K83N 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.666) TCGA-73-A9RS-01 14 107170044 107170044 C A IGHV1-69 Missense_Mutation p.A80S 0.58 tolerated(0.2) benign(0.115) TCGA-73-A9RS-01 14 20019975 20019975 A T POTEM Silent p.T82T 0.07 TCGA-73-A9RS-01 14 20389592 20389592 C T OR4K5 Missense_Mutation p.T276I 0.36 deleterious(0.04) benign(0.35) TCGA-73-A9RS-01 14 20444386 20444386 C T OR4K15 Missense_Mutation p.L237F 0.17 tolerated(0.06) benign(0.182) TCGA-73-A9RS-01 14 20502294 20502294 C A OR4K13 Silent p.L208L 0.32 TCGA-73-A9RS-01 14 20711378 20711378 C A OR11H4 Missense_Mutation p.P143H 0.23 deleterious(0.02) benign(0.114) TCGA-73-A9RS-01 14 22539335 22539335 C A TRAV22 Missense_Mutation p.N65K 0.39 tolerated(0.22) benign(0.138) TCGA-73-A9RS-01 14 23828950 23828950 C A EFS Missense_Mutation p.G246V 0.17 deleterious(0.02) benign(0.082) TCGA-73-A9RS-01 14 24114504 24114504 G T DHRS2 Missense_Mutation p.G299V 0.23 deleterious_low_confidence(0) unknown(0) TCGA-73-A9RS-01 14 24727524 24727524 C A TGM1 Missense_Mutation p.V457L 0.17 deleterious(0.04) probably_damaging(0.927) TCGA-73-A9RS-01 14 25325144 25325144 C T STXBP6 Missense_Mutation p.G150E 0.21 tolerated(0.23) benign(0.169) TCGA-73-A9RS-01 14 38724611 38724611 C G CLEC14A Missense_Mutation p.S206T 0.36 deleterious(0.05) probably_damaging(0.998) TCGA-73-A9RS-01 14 42356679 42356679 G T LRFN5 Missense_Mutation p.C284F 0.33 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 14 45645738 45645738 G T FANCM Nonsense_Mutation p.G1261* 0.14 TCGA-73-A9RS-01 14 51219311 51219311 T A NIN Silent p.P1625P 0.33 TCGA-73-A9RS-01 14 51376707 51376707 C G PYGL Missense_Mutation p.G695R 0.32 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 14 52194604 52194604 G C FRMD6 Missense_Mutation p.E576Q 0.35 tolerated(0.22) benign(0.085) TCGA-73-A9RS-01 14 52471326 52471326 G T C14orf166 3'UTR 0.67 TCGA-73-A9RS-01 14 63246558 63246558 C G KCNH5 Missense_Mutation p.C636S 0.71 deleterious(0.01) probably_damaging(0.998) TCGA-73-A9RS-01 14 75413599 75413599 C T PGF Intron 0.50 TCGA-73-A9RS-01 14 77493410 77493410 C A IRF2BPL Silent p.P242P 0.75 TCGA-73-A9RS-01 14 81837363 81837363 C A STON2 Silent p.T180T 0.21 TCGA-73-A9RS-01 14 90651010 90651010 G T KCNK13 Missense_Mutation p.G297V 0.62 tolerated(0.5) benign(0.028) TCGA-73-A9RS-01 14 94088193 94088193 C A UNC79 Silent p.I1361I 0.28 TCGA-73-A9RS-01 14 95080701 95080701 G T SERPINA3 5'UTR 0.53 TCGA-73-A9RS-01 15 100331699 100331699 G T AC090825.1 5'Flank 0.33 TCGA-73-A9RS-01 15 101597188 101597188 C T LRRK1 Missense_Mutation p.P1487L 0.39 tolerated(0.7) benign(0.021) TCGA-73-A9RS-01 15 24922476 24922476 G T NPAP1 Missense_Mutation p.V488L 0.56 tolerated(0.66) benign(0.184) TCGA-73-A9RS-01 15 25442723 25442723 G C SNORD115-15 RNA 0.63 TCGA-73-A9RS-01 15 25465701 25465701 G T SNORD115-27 RNA 0.55 TCGA-73-A9RS-01 15 25961963 25961963 C A ATP10A Nonsense_Mutation p.E564* 0.30 TCGA-73-A9RS-01 15 28202803 28202803 C G OCA2 Missense_Mutation p.R572P 0.59 deleterious(0) probably_damaging(0.922) TCGA-73-A9RS-01 15 40582970 40582970 C A PLCB2 Silent p.T1035T 0.71 TCGA-73-A9RS-01 15 40660962 40660962 C - DISP2 Frame_Shift_Del p.D885Mfs*67 0.22 TCGA-73-A9RS-01 15 41810245 41810245 G C RPAP1 Missense_Mutation p.H1311D 0.26 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 15 41857287 41857287 C A TYRO3 Missense_Mutation p.A244D 0.52 deleterious(0.01) possibly_damaging(0.493) TCGA-73-A9RS-01 15 42138157 42138157 G C PLA2G4B Silent p.L735L 0.62 TCGA-73-A9RS-01 15 42170623 42170623 C A SPTBN5 Missense_Mutation p.E1129D 0.33 probably_damaging(0.983) TCGA-73-A9RS-01 15 43044216 43044216 C A TTBK2 Silent p.R1076R 0.44 TCGA-73-A9RS-01 15 44107160 44107160 C A MFAP1 Nonsense_Mutation p.E138* 0.13 TCGA-73-A9RS-01 15 44107161 44107161 C T MFAP1 Silent p.E137E 0.13 TCGA-73-A9RS-01 15 50211116 50211116 A G ATP8B4 Missense_Mutation p.L652S 0.20 deleterious(0) possibly_damaging(0.825) TCGA-73-A9RS-01 15 50279652 50279652 C G ATP8B4 Missense_Mutation p.K228N 0.19 tolerated(0.5) benign(0.009) TCGA-73-A9RS-01 15 50279666 50279666 G C ATP8B4 Missense_Mutation p.L224V 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-73-A9RS-01 15 50570900 50570900 G T GABPB1 Missense_Mutation p.Q373K 0.36 tolerated(0.07) benign(0.05) TCGA-73-A9RS-01 15 51991547 51991547 C A SCG3 Silent p.T339T 0.38 TCGA-73-A9RS-01 15 54306726 54306726 C A UNC13C Missense_Mutation p.F542L 0.22 tolerated_low_confidence(0.18) benign(0.001) TCGA-73-A9RS-01 15 55489093 55489093 A C RSL24D1 5'UTR 0.48 TCGA-73-A9RS-01 15 56923674 56923674 C A ZNF280D 3'UTR 0.14 TCGA-73-A9RS-01 15 58247337 58247337 A G ALDH1A2 3'UTR 0.19 TCGA-73-A9RS-01 15 60741956 60741956 C A NARG2 Nonsense_Mutation p.E404* 0.21 TCGA-73-A9RS-01 15 62944248 62944248 G A TLN2 Silent p.R93R 0.27 TCGA-73-A9RS-01 15 68631862 68631862 G T ITGA11 Missense_Mutation p.L418I 0.32 deleterious(0) possibly_damaging(0.569) TCGA-73-A9RS-01 15 73542014 73542014 G T NEO1 Missense_Mutation p.G616C 0.35 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 15 74481511 74481511 G T STRA6 Silent p.S384S 0.44 TCGA-73-A9RS-01 15 74628408 74628408 C A CCDC33 3'UTR 0.10 TCGA-73-A9RS-01 15 83933200 83933200 T G BNC1 Missense_Mutation p.Q268P 0.15 tolerated(0.11) benign(0.006) TCGA-73-A9RS-01 15 83933329 83933329 C - BNC1 Frame_Shift_Del p.G225Efs*13 0.15 TCGA-73-A9RS-01 15 85400425 85400425 G A ALPK3 Missense_Mutation p.R1021Q 0.22 tolerated_low_confidence(1) benign(0) TCGA-73-A9RS-01 15 86686994 86686994 G T AGBL1 Silent p.L14L 0.09 TCGA-73-A9RS-01 15 86807565 86807565 C T AGBL1 Missense_Mutation p.A342V 0.30 tolerated(0.06) benign(0.015) TCGA-73-A9RS-01 15 88420291 88420291 C G NTRK3 Missense_Mutation p.V799L 0.18 deleterious(0.01) possibly_damaging(0.777) TCGA-73-A9RS-01 15 89442693 89442693 T A MFGE8 Missense_Mutation p.Y366F 0.11 tolerated(1) benign(0.03) TCGA-73-A9RS-01 15 90213262 90213262 T C PLIN1 Missense_Mutation p.S183G 0.59 tolerated(1) benign(0.002) TCGA-73-A9RS-01 15 90321330 90321330 T A MESP2 Missense_Mutation p.L320Q 0.31 tolerated_low_confidence(0.12) benign(0.36) TCGA-73-A9RS-01 15 90984746 90984746 G T IQGAP1 Missense_Mutation p.A220S 0.12 deleterious(0) possibly_damaging(0.893) TCGA-73-A9RS-01 15 91795059 91795059 C A SV2B Silent p.V154V 0.12 TCGA-73-A9RS-01 15 99512739 99512739 G A PGPEP1L Silent p.L96L 0.10 TCGA-73-A9RS-01 16 10775960 10775961 CC A TEKT5 Frame_Shift_Del p.R251Mfs*19 0.21 TCGA-73-A9RS-01 16 11219945 11219945 G T CLEC16A Silent p.R861R 0.24 TCGA-73-A9RS-01 16 11859344 11859344 C G ZC3H7A Splice_Site p.X573_splice 0.22 TCGA-73-A9RS-01 16 12571584 12571584 C T SNX29 Silent p.I682I 0.14 TCGA-73-A9RS-01 16 15841966 15841966 T G MYH11 Missense_Mutation p.E713D 0.36 probably_damaging(0.987) TCGA-73-A9RS-01 16 1691144 1691144 G T CRAMP1L Missense_Mutation p.M261I 0.30 tolerated(0.05) benign(0.42) TCGA-73-A9RS-01 16 1818356 1818356 T A MAPK8IP3 Missense_Mutation p.V1239E 0.29 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 16 19079057 19079057 C T COQ7 Missense_Mutation p.S24L 0.24 tolerated(0.07) benign(0.003) TCGA-73-A9RS-01 16 20946686 20946686 A G DNAH3 Missense_Mutation p.I3994T 0.36 deleterious(0) possibly_damaging(0.635) TCGA-73-A9RS-01 16 23635389 23635389 C A PALB2 Silent p.V925V 0.18 TCGA-73-A9RS-01 16 27460101 27460101 G - IL21R Frame_Shift_Del p.G372Afs*8 0.12 TCGA-73-A9RS-01 16 27561059 27561059 G A GTF3C1 Silent p.L51L 0.33 TCGA-73-A9RS-01 16 2814496 2814497 - G SRRM2 Frame_Shift_Ins p.E1324Gfs*11 0.19 TCGA-73-A9RS-01 16 29845288 29845288 G T MVP Missense_Mutation p.V160L 0.15 tolerated(0.48) benign(0.004) TCGA-73-A9RS-01 16 30037139 30037139 A G FAM57B Missense_Mutation p.W150R 0.28 deleterious(0.03) probably_damaging(0.984) TCGA-73-A9RS-01 16 31072772 31072772 C A ZNF668 Nonsense_Mutation p.E516* 0.15 TCGA-73-A9RS-01 16 3807900 3807900 T A CREBBP Silent p.R1173R 0.19 TCGA-73-A9RS-01 16 47005819 47005819 C G DNAJA2 Missense_Mutation p.A43P 0.25 tolerated(0.13) possibly_damaging(0.857) TCGA-73-A9RS-01 16 50263155 50263155 T A PAPD5 Missense_Mutation p.H671Q 0.10 tolerated_low_confidence(0.06) benign(0.006) TCGA-73-A9RS-01 16 55517047 55517047 G T MMP2 Missense_Mutation p.R127M 0.40 deleterious(0.03) probably_damaging(0.997) TCGA-73-A9RS-01 16 55731892 55731892 C A SLC6A2 Silent p.G448G 0.25 TCGA-73-A9RS-01 16 56667261 56667261 G A MT1M Missense_Mutation p.C13Y 0.31 deleterious(0.02) possibly_damaging(0.712) TCGA-73-A9RS-01 16 61851628 61851628 G C CDH8 Missense_Mutation p.D344E 0.19 deleterious(0) benign(0.191) TCGA-73-A9RS-01 16 66586496 66586496 G T CKLF 5'UTR 0.29 TCGA-73-A9RS-01 16 67337123 67337123 G A KCTD19 Missense_Mutation p.T190I 0.34 deleterious(0) possibly_damaging(0.759) TCGA-73-A9RS-01 16 68404972 68404972 G T SMPD3 Silent p.A371A 0.28 TCGA-73-A9RS-01 16 70908205 70908205 C A HYDIN Intron 0.25 TCGA-73-A9RS-01 16 71509705 71509705 C G ZNF19 Missense_Mutation p.E249Q 0.20 deleterious(0.05) benign(0.383) TCGA-73-A9RS-01 16 71710481 71710481 C A PHLPP2 Missense_Mutation p.R447L 0.27 deleterious(0) probably_damaging(0.998) TCGA-73-A9RS-01 16 74955896 74955896 C A WDR59 Missense_Mutation p.V279L 0.45 tolerated(0.15) benign(0.209) TCGA-73-A9RS-01 16 777579 777579 G C HAGHL Missense_Mutation p.E24Q 0.27 tolerated(0.15) benign(0.067) TCGA-73-A9RS-01 16 84879436 84879436 T C CRISPLD2 Silent p.S95S 0.45 TCGA-73-A9RS-01 17 10317356 10317356 C A MYH8 Missense_Mutation p.S337I 0.29 tolerated(0.05) benign(0.431) TCGA-73-A9RS-01 17 10542435 10542435 T A MYH3 Silent p.G1058G 0.33 TCGA-73-A9RS-01 17 11631193 11631193 A G DNAH9 Missense_Mutation p.E1923G 0.62 probably_damaging(1) TCGA-73-A9RS-01 17 1538534 1538534 C A SCARF1 Missense_Mutation p.A671S 0.71 deleterious(0.04) possibly_damaging(0.601) TCGA-73-A9RS-01 17 15458646 15458646 C A TVP23C-CDRT4 Silent p.L15L 0.34 TCGA-73-A9RS-01 17 15516077 15516077 T C RP11-385D13.1 Missense_Mutation p.K664E 0.49 deleterious_low_confidence(0.05) benign(0.418) TCGA-73-A9RS-01 17 19314774 19314774 G C RNF112 Missense_Mutation p.R18P 0.24 deleterious_low_confidence(0.02) benign(0.005) TCGA-73-A9RS-01 17 1939286 1939286 G T DPH1 Missense_Mutation p.V106L 0.68 deleterious(0.02) possibly_damaging(0.859) TCGA-73-A9RS-01 17 2867212 2867212 C A RAP1GAP2 Silent p.I114I 0.82 TCGA-73-A9RS-01 17 31322662 31322662 C A SPACA3 Nonsense_Mutation p.Y90* 0.50 TCGA-73-A9RS-01 17 31323916 31323916 G T SPACA3 Missense_Mutation p.E133D 0.23 tolerated(0.19) benign(0.253) TCGA-73-A9RS-01 17 34251668 34251668 A C RDM1 Missense_Mutation p.C170G 0.54 deleterious(0.01) benign(0.143) TCGA-73-A9RS-01 17 37101346 37101346 C A FBXO47 Missense_Mutation p.R220S 0.25 deleterious(0) probably_damaging(0.986) TCGA-73-A9RS-01 17 37101355 37101355 G T FBXO47 Silent p.L217L 0.27 TCGA-73-A9RS-01 17 3945849 3945849 T G ZZEF1 Silent p.S2060S 0.55 TCGA-73-A9RS-01 17 39525756 39525756 C A KRT33B Nonsense_Mutation p.E83* 0.50 TCGA-73-A9RS-01 17 39534385 39534385 G T KRT34 Missense_Mutation p.P413T 0.65 deleterious(0) benign(0.032) TCGA-73-A9RS-01 17 39535853 39535853 C A KRT34 Missense_Mutation p.R282L 0.59 deleterious(0.04) benign(0.145) TCGA-73-A9RS-01 17 40332963 40332963 T C KCNH4 Translation_Start_Site p.M1? 0.26 deleterious(0) probably_damaging(0.993) TCGA-73-A9RS-01 17 41720985 41720985 G T MEOX1 Silent p.A171A 0.67 TCGA-73-A9RS-01 17 44067352 44067352 G T MAPT Missense_Mutation p.V431L 0.62 deleterious(0.05) possibly_damaging(0.785) TCGA-73-A9RS-01 17 46262200 46262200 G A SKAP1 Missense_Mutation p.P151L 0.58 tolerated(0.18) probably_damaging(0.996) TCGA-73-A9RS-01 17 47236534 47236534 G A B4GALNT2 Missense_Mutation p.V272M 0.61 deleterious(0.03) benign(0.185) TCGA-73-A9RS-01 17 48629481 48629481 G T SPATA20 Missense_Mutation p.G633C 0.60 tolerated(0.05) possibly_damaging(0.497) TCGA-73-A9RS-01 17 4917025 4917025 C T KIF1C Silent p.T523T 0.40 TCGA-73-A9RS-01 17 50008356 50008357 - C CA10 Frame_Shift_Ins p.R92Qfs*47 0.23 TCGA-73-A9RS-01 17 57918683 57918683 G C VMP1 3'Flank 0.28 TCGA-73-A9RS-01 17 74902173 74902173 C G MGAT5B Missense_Mutation p.P321R 0.56 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 17 7579312 7579312 C A TP53 Silent p.T125T 0.61 TCGA-73-A9RS-01 17 7948152 7948152 G A ALOX15B Missense_Mutation p.A228T 0.40 tolerated(0.08) benign(0.004) TCGA-73-A9RS-01 17 79973030 79973030 G T ASPSCR1 Missense_Mutation p.R478L 0.65 deleterious_low_confidence(0.03) benign(0.001) TCGA-73-A9RS-01 18 11824926 11824926 G C GNAL Missense_Mutation p.D212H 0.58 deleterious(0) probably_damaging(0.975) TCGA-73-A9RS-01 18 12028049 12028049 A C IMPA2 Silent p.S166S 0.62 TCGA-73-A9RS-01 18 14543032 14543032 G T POTEC Missense_Mutation p.S38R 0.40 tolerated_low_confidence(0.06) possibly_damaging(0.451) TCGA-73-A9RS-01 18 19154256 19154256 C A ESCO1 Missense_Mutation p.K183N 0.18 tolerated(0.09) benign(0.041) TCGA-73-A9RS-01 18 21759781 21759781 C A OSBPL1A Missense_Mutation p.V611L 0.54 deleterious(0) probably_damaging(0.978) TCGA-73-A9RS-01 18 22806148 22806148 G C ZNF521 Missense_Mutation p.N578K 0.30 tolerated(0.36) possibly_damaging(0.53) TCGA-73-A9RS-01 18 22807514 22807514 C A ZNF521 Missense_Mutation p.C123F 0.32 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 18 29049102 29049102 C A DSG3 Missense_Mutation p.H563N 0.61 tolerated(0.12) benign(0) TCGA-73-A9RS-01 18 29049193 29049193 G T DSG3 Missense_Mutation p.G593V 0.52 tolerated(0.13) benign(0.081) TCGA-73-A9RS-01 18 31319865 31319865 C A ASXL3 Missense_Mutation p.L833M 0.62 possibly_damaging(0.534) TCGA-73-A9RS-01 18 32887072 32887072 G T ZNF271 RNA 0.70 TCGA-73-A9RS-01 18 3582130 3582130 A T DLGAP1 Missense_Mutation p.Y570N 0.57 deleterious(0) probably_damaging(0.998) TCGA-73-A9RS-01 18 42643107 42643107 G A SETBP1 Missense_Mutation p.R1412Q 0.30 deleterious(0) probably_damaging(0.99) TCGA-73-A9RS-01 18 42643108 42643108 G T SETBP1 Silent p.R1412R 0.26 TCGA-73-A9RS-01 18 43262467 43262467 G C SLC14A2 Missense_Mutation p.A916P 0.51 tolerated_low_confidence(0.05) probably_damaging(0.981) TCGA-73-A9RS-01 18 44030734 44030734 G T RNF165 Missense_Mutation p.R263M 0.63 deleterious(0) probably_damaging(0.935) TCGA-73-A9RS-01 18 48335735 48335735 G A MRO Intron 0.53 TCGA-73-A9RS-01 18 5406818 5406818 C A EPB41L3 Missense_Mutation p.R769S 0.53 tolerated(0.11) probably_damaging(0.971) TCGA-73-A9RS-01 18 64211363 64211363 G C CDH19 Silent p.S353S 0.31 TCGA-73-A9RS-01 18 694316 694316 C A ENOSF1 Missense_Mutation p.V131L 0.18 deleterious(0) possibly_damaging(0.595) TCGA-73-A9RS-01 18 76756920 76756920 C G SALL3 Missense_Mutation p.N1167K 0.22 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 19 1037793 1037793 C T CNN2 Missense_Mutation p.P275L 0.24 deleterious(0.02) possibly_damaging(0.536) TCGA-73-A9RS-01 19 10655511 10655511 C G ATG4D Silent p.L96L 0.36 TCGA-73-A9RS-01 19 11143965 11143965 G T SMARCA4 Splice_Site p.X1183_splice 0.66 TCGA-73-A9RS-01 19 1207105 1207105 G T STK11 Nonsense_Mutation p.E65* 0.75 TCGA-73-A9RS-01 19 14627794 14627794 G A DNAJB1 Silent p.Y92Y 0.64 TCGA-73-A9RS-01 19 15565206 15565206 G T RASAL3 Missense_Mutation p.A709D 0.74 deleterious(0.02) probably_damaging(0.921) TCGA-73-A9RS-01 19 16860348 16860348 C A NWD1 Missense_Mutation p.R299S 0.69 tolerated(0.31) benign(0.105) TCGA-73-A9RS-01 19 17785518 17785518 T A UNC13A Missense_Mutation p.T34S 0.57 deleterious_low_confidence(0) possibly_damaging(0.745) TCGA-73-A9RS-01 19 19338820 19338821 CC A NCAN Frame_Shift_Del p.L799Wfs*28 0.38 TCGA-73-A9RS-01 19 19606643 19606643 G T GATAD2A Silent p.G235G 0.17 TCGA-73-A9RS-01 19 19905283 19905283 C T ZNF506 3'UTR 0.37 TCGA-73-A9RS-01 19 30936044 30936044 G C ZNF536 Missense_Mutation p.Q525H 0.21 tolerated(0.08) probably_damaging(0.993) TCGA-73-A9RS-01 19 36029558 36029558 A C GAPDHS Missense_Mutation p.D141A 0.19 deleterious_low_confidence(0.01) benign(0.222) TCGA-73-A9RS-01 19 36940216 36940216 C A ZNF566 Missense_Mutation p.G308V 0.49 deleterious(0.01) probably_damaging(1) TCGA-73-A9RS-01 19 38230178 38230178 G C ZNF573 Missense_Mutation p.Q405E 0.22 tolerated(0.07) possibly_damaging(0.778) TCGA-73-A9RS-01 19 38689090 38689090 G T SIPA1L3 Silent p.L1634L 0.46 TCGA-73-A9RS-01 19 38689091 38689091 G T SIPA1L3 Missense_Mutation p.D1635Y 0.46 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 19 38948766 38948766 G T RYR1 Silent p.V667V 0.23 TCGA-73-A9RS-01 19 39963566 39963566 A - SUPT5H Frame_Shift_Del p.G719Afs*6 0.28 TCGA-73-A9RS-01 19 40221955 40221955 G A CLC 3'UTR 0.46 TCGA-73-A9RS-01 19 40745965 40745965 T A AKT2 Missense_Mutation p.H209L 0.18 deleterious(0.03) possibly_damaging(0.726) TCGA-73-A9RS-01 19 4157000 4157000 G T CREB3L3 Silent p.L55L 0.20 TCGA-73-A9RS-01 19 42221548 42221548 T A CEACAM5 Missense_Mutation p.L378H 0.22 deleterious(0) unknown(0) TCGA-73-A9RS-01 19 42482328 42482328 C A ATP1A3 Missense_Mutation p.G607V 0.46 tolerated(0.09) probably_damaging(0.947) TCGA-73-A9RS-01 19 43383789 43383789 T A PSG1 5'UTR 0.46 TCGA-73-A9RS-01 19 43428937 43428937 G T PSG7 3'UTR 0.20 TCGA-73-A9RS-01 19 44536864 44536864 G A ZNF222 Missense_Mutation p.C386Y 0.34 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 19 46308033 46308033 A G RSPH6A Missense_Mutation p.M377T 0.19 tolerated(0.55) benign(0.006) TCGA-73-A9RS-01 19 46326640 46326640 C A SYMPK Missense_Mutation p.G897V 0.48 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 19 4684738 4684738 C G DPP9 Silent p.V705V 0.67 TCGA-73-A9RS-01 19 48517520 48517520 A T ELSPBP1 Missense_Mutation p.T55S 0.21 deleterious(0.01) probably_damaging(0.984) TCGA-73-A9RS-01 19 50918227 50918227 G T POLD1 Silent p.L848L 0.33 TCGA-73-A9RS-01 19 51129209 51129209 G T SYT3 Silent p.T449T 0.39 TCGA-73-A9RS-01 19 51171704 51171704 G T SHANK1 Missense_Mutation p.S1171R 0.33 unknown(0) TCGA-73-A9RS-01 19 51330185 51330185 C A KLK15 Missense_Mutation p.G144C 0.26 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 19 51742993 51742993 G T CD33 3'UTR 0.38 TCGA-73-A9RS-01 19 5238994 5238994 C A PTPRS Silent p.A595A 0.48 TCGA-73-A9RS-01 19 52793735 52793735 G C ZNF766 Missense_Mutation p.A231P 0.22 deleterious(0.01) possibly_damaging(0.87) TCGA-73-A9RS-01 19 53058295 53058295 G A ZNF808 Missense_Mutation p.C709Y 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-73-A9RS-01 19 53454018 53454018 C A ZNF816 Missense_Mutation p.G337V 0.27 deleterious(0) probably_damaging(0.994) TCGA-73-A9RS-01 19 53612528 53612528 G C ZNF415 Nonsense_Mutation p.S257* 0.18 TCGA-73-A9RS-01 19 53645497 53645497 A CG ZNF347 Frame_Shift_Ins p.L196Pfs*7 0.14 TCGA-73-A9RS-01 19 53645665 53645665 T A ZNF347 Missense_Mutation p.H140L 0.20 deleterious(0.04) benign(0.048) TCGA-73-A9RS-01 19 53668611 53668611 C G ZNF665 Missense_Mutation p.E378Q 0.41 deleterious(0.03) benign(0.344) TCGA-73-A9RS-01 19 54844896 54844896 T A LILRA4 Missense_Mutation p.S483C 0.19 deleterious(0.01) possibly_damaging(0.615) TCGA-73-A9RS-01 19 55046958 55046958 G T KIR3DX1 Missense_Mutation p.G168V 0.20 tolerated(0.22) possibly_damaging(0.45) TCGA-73-A9RS-01 19 55112202 55112202 C G LILRA1 Missense_Mutation p.R464G 0.38 deleterious(0) possibly_damaging(0.491) TCGA-73-A9RS-01 19 55451568 55451568 C A NLRP7 Missense_Mutation p.A207S 0.17 deleterious(0.04) probably_damaging(0.989) TCGA-73-A9RS-01 19 55495061 55495061 T A NLRP2 Missense_Mutation p.N665K 0.24 deleterious(0.04) possibly_damaging(0.859) TCGA-73-A9RS-01 19 55994309 55994309 G T ZNF628 Missense_Mutation p.Q583H 0.50 deleterious(0.01) probably_damaging(0.977) TCGA-73-A9RS-01 19 56515421 56515421 C A NLRP5 Missense_Mutation p.N134K 0.26 tolerated(0.32) benign(0.031) TCGA-73-A9RS-01 19 56953374 56953374 A G ZNF667 Silent p.F330F 0.16 TCGA-73-A9RS-01 19 56953406 56953406 G T ZNF667 Missense_Mutation p.Q320K 0.18 tolerated(0.41) benign(0.003) TCGA-73-A9RS-01 19 57333124 57333124 T A PEG3 Splice_Site p.X189_splice 0.21 TCGA-73-A9RS-01 19 58232065 58232065 G A ZNF671 Silent p.I463I 0.19 TCGA-73-A9RS-01 19 58445270 58445270 C A ZNF418 Intron 0.20 TCGA-73-A9RS-01 19 630027 630027 T A POLRMT Missense_Mutation p.K112M 0.77 deleterious(0.01) benign(0.006) TCGA-73-A9RS-01 19 6684576 6684576 T C C3 Missense_Mutation p.E1372G 0.28 tolerated(0.29) benign(0.001) TCGA-73-A9RS-01 19 7184473 7184473 C A INSR Missense_Mutation p.Q276H 0.66 deleterious(0.03) possibly_damaging(0.673) TCGA-73-A9RS-01 19 9071180 9071180 G T MUC16 Silent p.T5422T 0.50 TCGA-73-A9RS-01 19 9089476 9089476 G T MUC16 Missense_Mutation p.T780K 0.64 unknown(0) TCGA-73-A9RS-01 19 9578838 9578838 C A ZNF560 Missense_Mutation p.R262M 0.66 deleterious(0) benign(0.068) TCGA-73-A9RS-01 1 1018326 1018326 T G C1orf159 Silent p.R182R 0.36 TCGA-73-A9RS-01 1 103345292 103345292 C G COL11A1 Missense_Mutation p.E1741Q 0.14 unknown(0) TCGA-73-A9RS-01 1 103379933 103379933 C A COL11A1 Missense_Mutation p.G1318V 0.30 unknown(0) TCGA-73-A9RS-01 1 103427734 103427734 G A COL11A1 Nonsense_Mutation p.Q1038* 0.26 TCGA-73-A9RS-01 1 110300634 110300634 T A EPS8L3 Missense_Mutation p.K256M 0.23 tolerated(0.11) benign(0.316) TCGA-73-A9RS-01 1 110555084 110555084 G A AHCYL1 Silent p.A159A 0.40 TCGA-73-A9RS-01 1 115418710 115418710 G A SYCP1 Silent p.E226E 0.20 TCGA-73-A9RS-01 1 11579436 11579436 G T PTCHD2 Missense_Mutation p.K638N 0.28 tolerated(0.14) possibly_damaging(0.622) TCGA-73-A9RS-01 1 120307019 120307019 C T HMGCS2 Missense_Mutation p.R112Q 0.37 tolerated(0.32) benign(0.01) TCGA-73-A9RS-01 1 12049270 12049270 G C MFN2 Missense_Mutation p.K15N 0.23 deleterious(0.02) probably_damaging(0.941) TCGA-73-A9RS-01 1 12855741 12855741 G A PRAMEF1 Missense_Mutation p.G341R 0.28 tolerated(0.31) benign(0.021) TCGA-73-A9RS-01 1 12885039 12885039 G T PRAMEF11 Missense_Mutation p.L358M 0.17 deleterious(0.04) probably_damaging(0.992) TCGA-73-A9RS-01 1 12939350 12939350 C A PRAMEF4 3'UTR 0.37 TCGA-73-A9RS-01 1 12980170 12980170 C A PRAMEF7 Silent p.V454V 0.23 TCGA-73-A9RS-01 1 145281466 145281466 C T NOTCH2NL Silent p.L132L 0.17 TCGA-73-A9RS-01 1 145281983 145281983 G A NOTCH2NL Nonsense_Mutation p.W221* 0.07 TCGA-73-A9RS-01 1 145487427 145487427 A T LIX1L Missense_Mutation p.Y139F 0.44 tolerated(0.18) probably_damaging(0.953) TCGA-73-A9RS-01 1 146631111 146631111 C A PRKAB2 3'UTR 0.17 TCGA-73-A9RS-01 1 147380964 147380964 C A GJA8 Silent p.A294A 0.43 TCGA-73-A9RS-01 1 149939389 149939389 C T OTUD7B Missense_Mutation p.R111Q 0.48 deleterious(0) probably_damaging(0.996) TCGA-73-A9RS-01 1 150526135 150526135 C A ADAMTSL4 Missense_Mutation p.T223N 0.29 tolerated(0.34) benign(0.002) TCGA-73-A9RS-01 1 152128814 152128814 C A RPTN Missense_Mutation p.G254V 0.40 deleterious(0.01) possibly_damaging(0.613) TCGA-73-A9RS-01 1 152276192 152276192 G - FLG Frame_Shift_Del p.H3724Mfs*55 0.35 TCGA-73-A9RS-01 1 152277245 152277245 G C FLG Missense_Mutation p.R3373G 0.29 unknown(0) TCGA-73-A9RS-01 1 152671609 152671609 C A LCE2A Missense_Mutation p.H78N 0.43 tolerated_low_confidence(0.3) unknown(0) TCGA-73-A9RS-01 1 152882320 152882320 G T IVL Missense_Mutation p.S16I 0.55 deleterious_low_confidence(0.03) unknown(0) TCGA-73-A9RS-01 1 152957905 152957905 C G SPRR1A Missense_Mutation p.P67A 0.21 deleterious(0.01) benign(0.125) TCGA-73-A9RS-01 1 153312860 153312860 T CA PGLYRP4 Frame_Shift_Ins p.Y274Lfs*2 0.28 TCGA-73-A9RS-01 1 153735732 153735732 C T INTS3 Missense_Mutation p.H554Y 0.13 tolerated(0.41) benign(0.095) TCGA-73-A9RS-01 1 155186247 155186247 G A MTX1 3'Flank 0.15 TCGA-73-A9RS-01 1 155230165 155230165 C G SCAMP3 Missense_Mutation p.R115P 0.17 deleterious(0) possibly_damaging(0.852) TCGA-73-A9RS-01 1 155449833 155449833 T A ASH1L Missense_Mutation p.Q943L 0.41 tolerated_low_confidence(0.06) benign(0.117) TCGA-73-A9RS-01 1 155885685 155885685 C A KIAA0907 Missense_Mutation p.G542W 0.14 deleterious(0.02) probably_damaging(0.988) TCGA-73-A9RS-01 1 156823864 156823864 C A INSRR Missense_Mutation p.G106V 0.31 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 1 156849119 156849119 A T NTRK1 Missense_Mutation p.M671L 0.45 deleterious(0.04) benign(0.009) TCGA-73-A9RS-01 1 156851340 156851340 G T NTRK1 Missense_Mutation p.R766L 0.45 deleterious(0) possibly_damaging(0.767) TCGA-73-A9RS-01 1 157509004 157509004 G C FCRL5 Missense_Mutation p.S425W 0.20 deleterious(0.04) probably_damaging(0.989) TCGA-73-A9RS-01 1 157766894 157766894 G A FCRL1 Silent p.D405D 0.40 TCGA-73-A9RS-01 1 157766895 157766895 T C FCRL1 Missense_Mutation p.D405G 0.41 tolerated(0.18) benign(0.007) TCGA-73-A9RS-01 1 157804304 157804304 C T CD5L Missense_Mutation p.S204N 0.26 tolerated(0.41) benign(0.075) TCGA-73-A9RS-01 1 158298003 158298003 G T CD1B 3'UTR 0.20 TCGA-73-A9RS-01 1 158435350 158435350 C A OR10K1 5'UTR 0.32 TCGA-73-A9RS-01 1 158435351 158435351 C A OR10K1 5'UTR 0.32 TCGA-73-A9RS-01 1 158549016 158549016 C G OR10X1 Missense_Mutation p.G225A 0.17 tolerated(0.34) benign(0.327) TCGA-73-A9RS-01 1 159175263 159175263 C A DARC Missense_Mutation p.P14T 0.27 tolerated(0.5) benign(0.007) TCGA-73-A9RS-01 1 159901257 159901257 T C IGSF9 Missense_Mutation p.N500S 0.46 tolerated(0.59) benign(0.007) TCGA-73-A9RS-01 1 160111198 160111198 G T ATP1A2 3'UTR 0.39 TCGA-73-A9RS-01 1 160460947 160460947 G T SLAMF6 Missense_Mutation p.S205Y 0.34 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 1 161166302 161166302 T A ADAMTS4 Intron 0.49 TCGA-73-A9RS-01 1 161495154 161495154 G T HSPA6 Missense_Mutation p.D236Y 0.33 deleterious_low_confidence(0) probably_damaging(1) TCGA-73-A9RS-01 1 161512800 161512800 G T FCGR3A 3'UTR 0.45 TCGA-73-A9RS-01 1 161681924 161681924 C G FCRLA Missense_Mutation p.H257D 0.35 tolerated(0.61) probably_damaging(0.977) TCGA-73-A9RS-01 1 164781329 164781329 A T PBX1 Missense_Mutation p.T314S 0.38 tolerated(0.2) benign(0.04) TCGA-73-A9RS-01 1 168344801 168344801 C A MIR557 RNA 0.37 TCGA-73-A9RS-01 1 169511989 169511989 G A F5 Missense_Mutation p.P780L 0.34 tolerated(0.2) benign(0.034) TCGA-73-A9RS-01 1 169701920 169701920 G T SELE Missense_Mutation p.T86N 0.38 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 1 170964596 170964596 C A MROH9 Missense_Mutation p.P421T 0.18 deleterious(0) probably_damaging(0.995) TCGA-73-A9RS-01 1 171162473 171162473 G T FMO2 Splice_Site p.X45_splice 0.27 TCGA-73-A9RS-01 1 172411632 172411632 C G PIGC Missense_Mutation p.R44P 0.19 deleterious(0.03) probably_damaging(0.973) TCGA-73-A9RS-01 1 173490505 173490505 C T SLC9C2 Missense_Mutation p.D892N 0.21 tolerated(0.23) benign(0.272) TCGA-73-A9RS-01 1 175053004 175053004 A T TNN Silent p.T389T 0.24 TCGA-73-A9RS-01 1 17597421 17597421 G A PADI3 Silent p.V293V 0.34 TCGA-73-A9RS-01 1 176526130 176526130 G T PAPPA2 Missense_Mutation p.K224N 0.23 deleterious(0.01) benign(0.348) TCGA-73-A9RS-01 1 176661363 176661363 C A PAPPA2 Missense_Mutation p.P845T 0.27 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 1 176760484 176760484 T A PAPPA2 Missense_Mutation p.L1629H 0.20 tolerated(0.56) benign(0.004) TCGA-73-A9RS-01 1 176845699 176845699 G C ASTN1 Missense_Mutation p.P1146R 0.20 deleterious(0) probably_damaging(0.982) TCGA-73-A9RS-01 1 176926922 176926922 A T ASTN1 Silent p.V593V 0.18 TCGA-73-A9RS-01 1 178063716 178063716 C T RASAL2 Missense_Mutation p.P30L 0.20 deleterious_low_confidence(0) benign(0.35) TCGA-73-A9RS-01 1 181727990 181727990 G C CACNA1E Missense_Mutation p.A1531P 0.38 deleterious(0) probably_damaging(0.936) TCGA-73-A9RS-01 1 183871712 183871712 T G RGL1 Missense_Mutation p.I478R 0.13 deleterious(0) probably_damaging(0.951) TCGA-73-A9RS-01 1 186158784 186158784 G A HMCN1 Missense_Mutation p.G5561E 0.29 probably_damaging(0.996) TCGA-73-A9RS-01 1 19408099 19408099 C A UBR4 Intron 0.40 TCGA-73-A9RS-01 1 19433220 19433220 C A UBR4 Missense_Mutation p.G4079V 0.31 benign(0.001) TCGA-73-A9RS-01 1 196311358 196311358 T C KCNT2 Silent p.Q468Q 0.09 TCGA-73-A9RS-01 1 196311359 196311359 C T KCNT2 Splice_Site p.X468_splice 0.10 TCGA-73-A9RS-01 1 196658671 196658671 G T CFH Missense_Mutation p.E362D 0.33 tolerated(0.06) benign(0.214) TCGA-73-A9RS-01 1 196973894 196973894 C A CFHR5 Nonsense_Mutation p.C478* 0.08 TCGA-73-A9RS-01 1 197019856 197019856 C A F13B Missense_Mutation p.G570V 0.25 deleterious(0) probably_damaging(0.994) TCGA-73-A9RS-01 1 197070829 197070829 T C ASPM Missense_Mutation p.R2518G 0.13 tolerated(0.48) possibly_damaging(0.881) TCGA-73-A9RS-01 1 197396899 197396899 G A CRB1 Missense_Mutation p.G815E 0.37 deleterious(0.05) possibly_damaging(0.819) TCGA-73-A9RS-01 1 198697577 198697577 G T PTPRC Missense_Mutation p.C610F 0.09 tolerated(0.08) benign(0.296) TCGA-73-A9RS-01 1 200378175 200378175 T A ZNF281 Missense_Mutation p.K220M 0.38 deleterious(0) probably_damaging(0.994) TCGA-73-A9RS-01 1 201018140 201018140 T A CACNA1S Silent p.V1443V 0.42 TCGA-73-A9RS-01 1 201020188 201020188 G T CACNA1S Missense_Mutation p.P1346Q 0.14 deleterious(0.04) probably_damaging(0.942) TCGA-73-A9RS-01 1 203017403 203017403 G C PPFIA4 5'Flank 0.23 TCGA-73-A9RS-01 1 203017404 203017404 G T PPFIA4 5'Flank 0.23 TCGA-73-A9RS-01 1 20412699 20412699 C - PLA2G5 Frame_Shift_Del p.K57Rfs*49 0.12 TCGA-73-A9RS-01 1 207642047 207642047 C A CR2 Silent p.P207P 0.35 TCGA-73-A9RS-01 1 209950757 209950757 C A TRAF3IP3 Missense_Mutation p.Q372K 0.27 tolerated(0.5) benign(0.106) TCGA-73-A9RS-01 1 211092998 211092998 G T KCNH1 Silent p.A482A 0.41 TCGA-73-A9RS-01 1 212788546 212788546 G C ATF3 Silent p.A61A 0.37 TCGA-73-A9RS-01 1 214170108 214170108 C A PROX1 Missense_Mutation p.A77E 0.21 tolerated(0.05) probably_damaging(1) TCGA-73-A9RS-01 1 214818473 214818473 C T CENPF Nonsense_Mutation p.Q1854* 0.31 TCGA-73-A9RS-01 1 215953302 215953302 G C USH2A Missense_Mutation p.L3608V 0.23 benign(0.075) TCGA-73-A9RS-01 1 216258205 216258205 C A USH2A Missense_Mutation p.G1668C 0.35 benign(0.415) TCGA-73-A9RS-01 1 216420210 216420210 G T USH2A Missense_Mutation p.F842L 0.16 benign(0.009) TCGA-73-A9RS-01 1 216680464 216680464 C A ESRRG Silent p.A410A 0.32 TCGA-73-A9RS-01 1 21900252 21900252 C G ALPL Missense_Mutation p.I319M 0.60 tolerated(0.16) benign(0.21) TCGA-73-A9RS-01 1 22336207 22336207 G A CELA3A Missense_Mutation p.G218R 0.33 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 1 228497226 228497226 C T OBSCN Silent p.G5283G 0.24 TCGA-73-A9RS-01 1 232561372 232561372 C A SIPA1L2 Silent p.P1531P 0.35 TCGA-73-A9RS-01 1 234519651 234519651 A T COA6 3'UTR 0.29 TCGA-73-A9RS-01 1 235840904 235840904 T A LYST Missense_Mutation p.M3606L 0.20 tolerated(0.17) benign(0.035) TCGA-73-A9RS-01 1 235916361 235916361 C T LYST Silent p.L2481L 0.28 TCGA-73-A9RS-01 1 236920860 236920860 G A ACTN2 Silent p.L743L 0.25 TCGA-73-A9RS-01 1 237774104 237774104 A T RYR2 Nonsense_Mutation p.K1576* 0.36 TCGA-73-A9RS-01 1 237872164 237872164 C T RYR2 Missense_Mutation p.S3303F 0.31 probably_damaging(0.961) TCGA-73-A9RS-01 1 237969529 237969529 G A RYR2 Missense_Mutation p.M4748I 0.24 benign(0.322) TCGA-73-A9RS-01 1 238090547 238090547 C A RP11-193H5.1 RNA 0.45 TCGA-73-A9RS-01 1 240286492 240286492 G C FMN2 Missense_Mutation p.L543F 0.29 unknown(0) TCGA-73-A9RS-01 1 24483958 24483958 C A IFNLR1 Nonsense_Mutation p.E409* 0.36 TCGA-73-A9RS-01 1 24484226 24484226 C G IFNLR1 Missense_Mutation p.K319N 0.24 tolerated(0.2) benign(0.048) TCGA-73-A9RS-01 1 245020929 245020929 C A HNRNPU Missense_Mutation p.G529C 0.32 deleterious(0) unknown(0) TCGA-73-A9RS-01 1 246498757 246498757 T C SMYD3 Missense_Mutation p.H83R 0.37 deleterious(0) probably_damaging(0.995) TCGA-73-A9RS-01 1 246810640 246810640 G T CNST Missense_Mutation p.E379D 0.21 tolerated(0.4) benign(0.056) TCGA-73-A9RS-01 1 247695676 247695676 G T OR2C3 Silent p.I46I 0.34 TCGA-73-A9RS-01 1 247752437 247752437 T A OR2G2 Missense_Mutation p.I259N 0.15 deleterious(0.01) benign(0.279) TCGA-73-A9RS-01 1 248004480 248004480 G T OR11L1 Missense_Mutation p.T240K 0.43 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 1 248004627 248004627 C A OR11L1 Missense_Mutation p.R191I 0.41 deleterious(0) benign(0.004) TCGA-73-A9RS-01 1 248023924 248023924 G T TRIM58 Missense_Mutation p.K142N 0.24 deleterious(0) possibly_damaging(0.703) TCGA-73-A9RS-01 1 248113002 248113002 C A OR2L8 Silent p.T281T 0.15 TCGA-73-A9RS-01 1 248436484 248436484 G A OR2T33 Silent p.L211L 0.16 TCGA-73-A9RS-01 1 248436537 248436537 C T OR2T33 Missense_Mutation p.E194K 0.32 deleterious(0.01) probably_damaging(0.982) TCGA-73-A9RS-01 1 248458057 248458057 A G OR2T12 Missense_Mutation p.F275S 0.11 deleterious(0) probably_damaging(0.988) TCGA-73-A9RS-01 1 248525231 248525231 C T OR2T4 Nonsense_Mutation p.Q117* 0.17 TCGA-73-A9RS-01 1 248616481 248616481 G T OR2T2 Missense_Mutation p.C128F 0.14 deleterious(0) possibly_damaging(0.757) TCGA-73-A9RS-01 1 248737845 248737845 C A OR2T34 Missense_Mutation p.A72S 0.26 tolerated(1) benign(0.001) TCGA-73-A9RS-01 1 248790376 248790376 A T OR2T11 Missense_Mutation p.S18R 0.28 deleterious(0.04) benign(0.028) TCGA-73-A9RS-01 1 249119140 249119140 C A SH3BP5L 5'UTR 0.11 TCGA-73-A9RS-01 1 26378341 26378341 G T TRIM63 3'UTR 0.29 TCGA-73-A9RS-01 1 27224057 27224057 T A GPATCH3 Missense_Mutation p.E204V 0.38 deleterious(0) possibly_damaging(0.501) TCGA-73-A9RS-01 1 27622845 27622845 A T WDTC1 Missense_Mutation p.Q301L 0.33 tolerated(0.16) benign(0.047) TCGA-73-A9RS-01 1 28208944 28208944 T C THEMIS2 Missense_Mutation p.V370A 0.24 deleterious(0) possibly_damaging(0.755) TCGA-73-A9RS-01 1 29185484 29185484 G T OPRD1 Silent p.T82T 0.29 TCGA-73-A9RS-01 1 32050631 32050631 G T TINAGL1 Missense_Mutation p.R284L 0.24 deleterious(0.01) possibly_damaging(0.626) TCGA-73-A9RS-01 1 32751236 32751236 C A LCK Missense_Mutation p.D483E 0.29 tolerated(1) benign(0) TCGA-73-A9RS-01 1 32751237 32751237 C A LCK Silent p.R484R 0.29 TCGA-73-A9RS-01 1 33236105 33236105 C T KIAA1522 Missense_Mutation p.P442L 0.31 tolerated(0.22) unknown(0) TCGA-73-A9RS-01 1 34666469 34666469 G T C1orf94 Missense_Mutation p.G369V 0.26 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-73-A9RS-01 1 35579810 35579810 G T ZMYM1 Missense_Mutation p.R793S 0.19 tolerated(0.06) benign(0.021) TCGA-73-A9RS-01 1 36937940 36937940 G T CSF3R Missense_Mutation p.P299Q 0.32 tolerated(0.31) benign(0.053) TCGA-73-A9RS-01 1 37307336 37307336 C A GRIK3 Splice_Site p.X510_splice 0.33 TCGA-73-A9RS-01 1 37325571 37325571 G T GRIK3 Missense_Mutation p.N278K 0.22 deleterious(0) probably_damaging(0.95) TCGA-73-A9RS-01 1 37337807 37337807 C T GRIK3 Silent p.A238A 0.29 TCGA-73-A9RS-01 1 45484403 45484403 C A ZSWIM5 Missense_Mutation p.R1094L 0.17 tolerated(0.11) unknown(0) TCGA-73-A9RS-01 1 45793403 45793403 G A HPDL Missense_Mutation p.E195K 0.34 deleterious(0) probably_damaging(0.998) TCGA-73-A9RS-01 1 46751742 46751742 A C LRRC41 Missense_Mutation p.C263G 0.39 deleterious(0.03) probably_damaging(0.943) TCGA-73-A9RS-01 1 48695107 48695107 C A SLC5A9 Silent p.I185I 0.30 TCGA-73-A9RS-01 1 52227548 52227548 A T OSBPL9 Missense_Mutation p.Q238L 0.34 tolerated(0.23) benign(0.121) TCGA-73-A9RS-01 1 52498544 52498544 A G KTI12 Missense_Mutation p.L297S 0.29 tolerated(0.07) benign(0.314) TCGA-73-A9RS-01 1 53099294 53099294 C T FAM159A Silent p.C43C 0.23 TCGA-73-A9RS-01 1 55545304 55545304 G A USP24 Silent p.P2369P 0.35 TCGA-73-A9RS-01 1 67340463 67340463 C A WDR78 Splice_Site p.X267_splice 0.24 TCGA-73-A9RS-01 1 70478664 70478664 G A LRRC7 Missense_Mutation p.S343N 0.23 tolerated(1) benign(0.012) TCGA-73-A9RS-01 1 70504673 70504673 C G LRRC7 Missense_Mutation p.Q1018E 0.27 deleterious(0.03) benign(0.031) TCGA-73-A9RS-01 1 70618226 70618226 C A LRRC40 Missense_Mutation p.R443S 0.31 tolerated(0.13) benign(0.015) TCGA-73-A9RS-01 1 70705161 70705161 C A SRSF11 Nonsense_Mutation p.S253* 0.23 TCGA-73-A9RS-01 1 74648270 74648270 T A LRRIQ3 Missense_Mutation p.K175N 0.31 deleterious(0) possibly_damaging(0.894) TCGA-73-A9RS-01 1 74957847 74957847 G T TNNI3K Missense_Mutation p.V851L 0.29 tolerated_low_confidence(0.56) benign(0.001) TCGA-73-A9RS-01 1 75037811 75037811 C A C1orf173 Nonsense_Mutation p.E1195* 0.28 TCGA-73-A9RS-01 1 75681446 75681446 T C SLC44A5 Missense_Mutation p.Y574C 0.43 deleterious(0) probably_damaging(0.998) TCGA-73-A9RS-01 1 75684413 75684413 T C SLC44A5 Missense_Mutation p.K431E 0.27 tolerated(0.16) possibly_damaging(0.491) TCGA-73-A9RS-01 1 91866620 91866620 C G HFM1 Missense_Mutation p.C7S 0.24 tolerated_low_confidence(0.57) benign(0.001) TCGA-73-A9RS-01 1 91973939 91973939 G C CDC7 Missense_Mutation p.C107S 0.40 deleterious(0) probably_damaging(0.993) TCGA-73-A9RS-01 1 92200377 92200377 G T TGFBR3 Missense_Mutation p.T175N 0.26 deleterious(0) possibly_damaging(0.792) TCGA-73-A9RS-01 1 94645484 94645484 C A ARHGAP29 Missense_Mutation p.L759F 0.27 tolerated(0.15) probably_damaging(0.993) TCGA-73-A9RS-01 20 11899933 11899933 T C BTBD3 Intron 0.38 TCGA-73-A9RS-01 20 1460610 1460610 C A SIRPB2 Silent p.V62V 0.30 TCGA-73-A9RS-01 20 1616121 1616121 C G SIRPG Silent p.V291V 0.33 TCGA-73-A9RS-01 20 20149976 20149976 C A C20orf26 Missense_Mutation p.F419L 0.19 tolerated(0.15) possibly_damaging(0.731) TCGA-73-A9RS-01 20 23966386 23966386 T C GGTLC1 Missense_Mutation p.D150G 0.33 tolerated(0.05) benign(0.098) TCGA-73-A9RS-01 20 25439028 25439028 A T NINL Missense_Mutation p.D1278E 0.23 tolerated(1) benign(0) TCGA-73-A9RS-01 20 30411331 30411331 G T MYLK2 Missense_Mutation p.R275M 0.29 deleterious(0) probably_damaging(0.962) TCGA-73-A9RS-01 20 30432907 30432907 T A FOXS1 Missense_Mutation p.T147S 0.44 tolerated(0.34) benign(0.016) TCGA-73-A9RS-01 20 30584954 30584954 G C XKR7 Missense_Mutation p.R478S 0.17 deleterious(0.02) possibly_damaging(0.839) TCGA-73-A9RS-01 20 30671791 30671791 C G HCK Nonsense_Mutation p.Y209* 0.22 TCGA-73-A9RS-01 20 33114078 33114078 G T DYNLRB1 Missense_Mutation p.E3D 0.18 tolerated(0.17) benign(0.248) TCGA-73-A9RS-01 20 33438702 33438702 C A GGT7 Intron 0.22 TCGA-73-A9RS-01 20 33962061 33962061 T C UQCC1 Splice_Site p.X112_splice 0.15 TCGA-73-A9RS-01 20 3683935 3683935 C A SIGLEC1 Missense_Mutation p.L379F 0.48 deleterious(0.03) benign(0.014) TCGA-73-A9RS-01 20 37546928 37546928 C A PPP1R16B Missense_Mutation p.N441K 0.18 tolerated(0.32) probably_damaging(0.989) TCGA-73-A9RS-01 20 39742697 39742697 C T TOP1 Silent p.L514L 0.23 TCGA-73-A9RS-01 20 42198095 42198095 G T SGK2 Missense_Mutation p.R160L 0.20 deleterious(0.01) benign(0.258) TCGA-73-A9RS-01 20 42965955 42965955 G T R3HDML Missense_Mutation p.R53L 0.20 deleterious(0.01) benign(0.095) TCGA-73-A9RS-01 20 44856163 44856163 G T CDH22 Silent p.T218T 0.45 TCGA-73-A9RS-01 20 45853199 45853199 C A ZMYND8 Missense_Mutation p.M963I 0.19 tolerated(0.14) possibly_damaging(0.5) TCGA-73-A9RS-01 20 47991262 47991262 G T KCNB1 Missense_Mutation p.L279I 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-73-A9RS-01 20 52188271 52188271 C A ZNF217 3'UTR 0.26 TCGA-73-A9RS-01 20 56098250 56098250 C T CTCFL Missense_Mutation p.E210K 0.26 tolerated(0.13) benign(0.025) TCGA-73-A9RS-01 20 56099025 56099025 G T CTCFL Silent p.I79I 0.14 TCGA-73-A9RS-01 20 56140830 56140830 T A PCK1 Silent p.L613L 0.17 TCGA-73-A9RS-01 20 57429320 57429320 G C GNAS Missense_Mutation p.G334R 0.14 tolerated_low_confidence(0.05) unknown(0) TCGA-73-A9RS-01 20 6093139 6093139 C T FERMT1 Missense_Mutation p.A173T 0.35 tolerated(0.64) benign(0.001) TCGA-73-A9RS-01 20 61452546 61452546 C A COL9A3 Missense_Mutation p.P108H 0.46 deleterious(0.05) unknown(0) TCGA-73-A9RS-01 20 62198545 62198545 C G HELZ2 Silent p.L722L 0.14 TCGA-73-A9RS-01 21 10944757 10944757 G A TPTE Silent p.N159N 0.17 TCGA-73-A9RS-01 21 11020859 11020859 C A BAGE2 RNA 0.06 TCGA-73-A9RS-01 21 19756025 19756025 C G TMPRSS15 Missense_Mutation p.E139Q 0.38 tolerated(0.32) benign(0.377) TCGA-73-A9RS-01 21 28210029 28210029 C A ADAMTS1 Missense_Mutation p.G925W 0.31 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 21 31654849 31654849 G T KRTAP24-1 Silent p.P134P 0.17 TCGA-73-A9RS-01 21 31797978 31797978 T C KRTAP13-3 Missense_Mutation p.T85A 0.32 tolerated(0.08) possibly_damaging(0.457) TCGA-73-A9RS-01 21 31798059 31798059 C T KRTAP13-3 Missense_Mutation p.E58K 0.38 tolerated(0.07) possibly_damaging(0.458) TCGA-73-A9RS-01 21 31971025 31971025 C T KRTAP6-2 Missense_Mutation p.G57S 0.19 unknown(0) TCGA-73-A9RS-01 21 31971043 31971043 C A KRTAP6-2 Missense_Mutation p.G51C 0.24 unknown(0) TCGA-73-A9RS-01 21 34927690 34927690 A T SON Silent p.T2051T 0.23 TCGA-73-A9RS-01 21 37650300 37650300 T G DOPEY2 Missense_Mutation p.Y1914D 0.40 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 21 45821651 45821651 C A TRPM2 Silent p.I803I 0.26 TCGA-73-A9RS-01 21 45821652 45821652 C A TRPM2 Missense_Mutation p.L804I 0.25 tolerated(0.29) possibly_damaging(0.833) TCGA-73-A9RS-01 21 46012280 46012280 G T KRTAP10-6 Missense_Mutation p.S29Y 0.15 deleterious(0.01) unknown(0) TCGA-73-A9RS-01 21 47635094 47635094 C A LSS Silent p.P337P 0.43 TCGA-73-A9RS-01 21 47969838 47969838 C A DIP2A Intron 0.30 TCGA-73-A9RS-01 22 21330055 21330055 C T AIFM3 Silent p.L265L 0.36 TCGA-73-A9RS-01 22 22160315 22160315 C G MAPK1 Missense_Mutation p.D106H 0.20 deleterious(0.02) possibly_damaging(0.775) TCGA-73-A9RS-01 22 23742487 23742487 C G ZDHHC8P1 RNA 0.29 TCGA-73-A9RS-01 22 24180609 24180609 T C DERL3 Missense_Mutation p.E86G 0.31 deleterious(0) probably_damaging(0.996) TCGA-73-A9RS-01 22 25120999 25120999 G A PIWIL3 Silent p.L705L 0.23 TCGA-73-A9RS-01 22 29517363 29517363 G T KREMEN1 Missense_Mutation p.C124F 0.19 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 22 38822689 38822689 G T KCNJ4 3'UTR 0.61 TCGA-73-A9RS-01 22 42536678 42536678 C G NDUFA6-AS1 3'Flank 0.29 TCGA-73-A9RS-01 22 43435835 43435835 T G TTLL1 Silent p.R407R 0.52 TCGA-73-A9RS-01 22 43435837 43435837 G T TTLL1 Missense_Mutation p.P406H 0.52 tolerated_low_confidence(0.54) benign(0.001) TCGA-73-A9RS-01 22 50719894 50719894 C A PLXNB2 Missense_Mutation p.R1186L 0.33 tolerated(0.16) possibly_damaging(0.724) TCGA-73-A9RS-01 2 10188593 10188593 A C KLF11 Missense_Mutation p.T377P 0.13 tolerated(0.51) benign(0.265) TCGA-73-A9RS-01 2 105858497 105858497 A G GPR45 Missense_Mutation p.Q61R 0.23 tolerated(0.12) benign(0.089) TCGA-73-A9RS-01 2 107007406 107007406 G A PLGLA RNA 0.17 TCGA-73-A9RS-01 2 113416547 113416547 C T SLC20A1 Silent p.L308L 0.43 TCGA-73-A9RS-01 2 113676349 113676349 G T IL37 Missense_Mutation p.C207F 0.51 tolerated(0.65) benign(0.036) TCGA-73-A9RS-01 2 114252766 114252766 G T CBWD2 Nonsense_Mutation p.E341* 0.63 TCGA-73-A9RS-01 2 11727528 11727528 C A GREB1 Intron 0.17 TCGA-73-A9RS-01 2 128186299 128186308 CGGGCATCCT - PROC Frame_Shift_Del p.I390Tfs*28 0.19 TCGA-73-A9RS-01 2 130832735 130832735 G T POTEF Silent p.P770P 0.17 TCGA-73-A9RS-01 2 132266177 132266177 C T AC093838.4 RNA 0.21 TCGA-73-A9RS-01 2 133542962 133542962 G T NCKAP5 Silent p.S474S 0.58 TCGA-73-A9RS-01 2 135630155 135630155 G A ACMSD Missense_Mutation p.D265N 0.21 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 2 141115590 141115590 C A LRP1B Missense_Mutation p.D3785Y 0.70 probably_damaging(0.961) TCGA-73-A9RS-01 2 141625277 141625277 C A LRP1B Missense_Mutation p.W1487C 0.63 benign(0.029) TCGA-73-A9RS-01 2 1437308 1437308 T A TPO Missense_Mutation p.I93K 0.16 tolerated(0.05) benign(0.115) TCGA-73-A9RS-01 2 143799741 143799741 G A KYNU Silent p.%3D 0.53 TCGA-73-A9RS-01 2 149248067 149248067 C G MBD5 Silent p.V1389V 0.67 TCGA-73-A9RS-01 2 149248068 149248068 T G MBD5 Missense_Mutation p.W1390G 0.67 deleterious(0.02) unknown(0) TCGA-73-A9RS-01 2 152487258 152487258 C A NEB Missense_Mutation p.A3232S 0.64 probably_damaging(0.999) TCGA-73-A9RS-01 2 160245959 160245959 T C BAZ2B Missense_Mutation p.K1038R 0.83 probably_damaging(0.995) TCGA-73-A9RS-01 2 162751273 162751273 C T SLC4A10 Missense_Mutation p.L427F 0.67 deleterious(0.02) probably_damaging(0.999) TCGA-73-A9RS-01 2 165586559 165586559 T A COBLL1 Silent p.T99T 0.26 TCGA-73-A9RS-01 2 166847868 166847868 T A SCN1A Missense_Mutation p.T1973S 0.42 tolerated(0.36) benign(0.047) TCGA-73-A9RS-01 2 166915117 166915117 G A SCN1A Missense_Mutation p.P116S 0.74 tolerated(0.26) benign(0.345) TCGA-73-A9RS-01 2 167330331 167330331 G A SCN7A Missense_Mutation p.P141S 0.45 tolerated(0.1) benign(0.064) TCGA-73-A9RS-01 2 168107616 168107616 C A XIRP2 Silent p.I3238I 0.75 TCGA-73-A9RS-01 2 170058370 170058370 G C LRP2 Silent p.T2740T 0.31 TCGA-73-A9RS-01 2 170063006 170063006 A T LRP2 Missense_Mutation p.H2408Q 0.23 probably_damaging(0.934) TCGA-73-A9RS-01 2 173891948 173891948 G T RAPGEF4 Missense_Mutation p.R840L 0.64 deleterious(0) probably_damaging(0.996) TCGA-73-A9RS-01 2 17698302 17698302 G C RAD51AP2 Missense_Mutation p.L461V 0.19 tolerated(0.15) benign(0.15) TCGA-73-A9RS-01 2 176987563 176987563 G C HOXD9 Missense_Mutation p.D23H 0.81 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 2 179416696 179416696 G T TTN Missense_Mutation p.L30311I 0.34 TCGA-73-A9RS-01 2 179442197 179442197 C - TTN Frame_Shift_Del p.L22956* 0.39 TCGA-73-A9RS-01 2 179586804 179586804 C A TTN Missense_Mutation p.G7529V 0.67 TCGA-73-A9RS-01 2 179616212 179616212 C A TTN Intron 0.37 TCGA-73-A9RS-01 2 17962699 17962699 A T GEN1 Silent p.G740G 0.63 TCGA-73-A9RS-01 2 179644837 179644837 G T TTN Missense_Mutation p.P1207T 0.39 TCGA-73-A9RS-01 2 181925502 181925502 G T UBE2E3 Missense_Mutation p.L163F 0.75 deleterious(0.01) possibly_damaging(0.775) TCGA-73-A9RS-01 2 182786708 182786708 A T SSFA2 Nonsense_Mutation p.K1082* 0.71 TCGA-73-A9RS-01 2 197080673 197080673 T C HECW2 Missense_Mutation p.Y1508C 0.65 deleterious(0) probably_damaging(0.998) TCGA-73-A9RS-01 2 200188654 200188654 G T SATB2 Missense_Mutation p.L472I 0.49 tolerated(0.46) benign(0.002) TCGA-73-A9RS-01 2 202725472 202725472 A C CDK15 Intron 0.18 TCGA-73-A9RS-01 2 206305167 206305167 G T PARD3B Nonsense_Mutation p.G877* 0.44 TCGA-73-A9RS-01 2 208795829 208795829 G A PLEKHM3 Silent p.A569A 0.49 TCGA-73-A9RS-01 2 211179736 211179736 C A MYL1 Missense_Mutation p.V11L 0.25 tolerated_low_confidence(0.07) unknown(0) TCGA-73-A9RS-01 2 212568852 212568852 G T ERBB4 Silent p.T422T 0.29 TCGA-73-A9RS-01 2 214727315 214727315 C A SPAG16 Missense_Mutation p.H393N 0.23 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 2 215279272 215279272 C G VWC2L Missense_Mutation p.H119D 0.22 deleterious(0.02) benign(0.157) TCGA-73-A9RS-01 2 215645633 215645633 C T BARD1 Missense_Mutation p.R322H 0.26 tolerated(0.1) benign(0.013) TCGA-73-A9RS-01 2 218925455 218925455 G T CXCR2P1 RNA 0.46 TCGA-73-A9RS-01 2 219888874 219888874 C T CCDC108 Missense_Mutation p.V820I 0.28 tolerated(0.77) benign(0.019) TCGA-73-A9RS-01 2 220166928 220166928 G T PTPRN Missense_Mutation p.P309T 0.16 tolerated(0.06) benign(0.017) TCGA-73-A9RS-01 2 220406683 220406683 C A CHPF Silent p.L181L 0.58 TCGA-73-A9RS-01 2 224760345 224760345 T A WDFY1 Missense_Mutation p.S201C 0.32 deleterious(0.03) probably_damaging(0.989) TCGA-73-A9RS-01 2 226378111 226378111 C A NYAP2 Silent p.G82G 0.15 TCGA-73-A9RS-01 2 226447247 226447247 A T NYAP2 Missense_Mutation p.M372L 0.29 tolerated(0.4) benign(0) TCGA-73-A9RS-01 2 227662852 227662852 T A IRS1 Silent p.A201A 0.25 TCGA-73-A9RS-01 2 230231744 230231744 G T DNER Silent p.A649A 0.30 TCGA-73-A9RS-01 2 231134555 231134555 C T SP140 Missense_Mutation p.A444V 0.43 tolerated(0.06) benign(0.3) TCGA-73-A9RS-01 2 234240343 234240343 C A SAG Missense_Mutation p.A264D 0.40 deleterious(0.04) probably_damaging(0.925) TCGA-73-A9RS-01 2 234627534 234627534 A T UGT1A4 Missense_Mutation p.Q23L 0.24 tolerated(0.68) benign(0) TCGA-73-A9RS-01 2 24021139 24021139 C A ATAD2B Missense_Mutation p.G837W 0.56 deleterious(0.03) probably_damaging(0.963) TCGA-73-A9RS-01 2 241622122 241622122 C A AQP12B Missense_Mutation p.V45L 0.21 tolerated(1) benign(0.001) TCGA-73-A9RS-01 2 241724508 241724508 C G KIF1A Silent p.A206A 0.15 TCGA-73-A9RS-01 2 26712547 26712547 G T OTOF Nonsense_Mutation p.S320* 0.12 TCGA-73-A9RS-01 2 27706523 27706523 G A IFT172 Missense_Mutation p.R136C 0.33 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 2 27746275 27746275 C A GCKR Missense_Mutation p.P616H 0.40 tolerated_low_confidence(0.14) possibly_damaging(0.518) TCGA-73-A9RS-01 2 32481909 32481909 G T NLRC4 5'UTR 0.36 TCGA-73-A9RS-01 2 3750104 3750104 G T ALLC Missense_Mutation p.R376L 0.48 deleterious_low_confidence(0.02) benign(0.027) TCGA-73-A9RS-01 2 39055497 39055497 T A DHX57 Missense_Mutation p.N875I 0.27 deleterious(0.01) possibly_damaging(0.908) TCGA-73-A9RS-01 2 39477672 39477672 C A MAP4K3 3'UTR 0.27 TCGA-73-A9RS-01 2 40656693 40656693 G T SLC8A1 Missense_Mutation p.P243H 0.23 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 2 40657236 40657236 G T SLC8A1 Missense_Mutation p.P62H 0.40 deleterious(0) probably_damaging(0.996) TCGA-73-A9RS-01 2 44550475 44550475 C A PREPL Missense_Mutation p.G608W 0.43 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 2 47177519 47177519 C T TTC7A Silent p.L68L 0.40 TCGA-73-A9RS-01 2 50573937 50573937 C - NRXN1 Intron 0.25 TCGA-73-A9RS-01 2 54164668 54164668 T A PSME4 Silent p.P185P 0.59 TCGA-73-A9RS-01 2 69601143 69601143 G A GFPT1 Missense_Mutation p.S37F 0.26 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 2 7027192 7027192 G - RSAD2 Frame_Shift_Del p.D213Ifs*8 0.38 TCGA-73-A9RS-01 2 73495930 73495930 C A FBXO41 Missense_Mutation p.D277Y 0.50 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 2 76975819 76975819 C A LRRTM4 3'UTR 0.20 TCGA-73-A9RS-01 2 85276572 85276572 C A KCMF1 Missense_Mutation p.Q229K 0.15 tolerated(0.07) possibly_damaging(0.783) TCGA-73-A9RS-01 2 86693766 86693766 G T KDM3A Nonsense_Mutation p.E427* 0.48 TCGA-73-A9RS-01 2 88082276 88082276 C A RGPD2 Missense_Mutation p.A1423S 0.23 deleterious(0.03) possibly_damaging(0.727) TCGA-73-A9RS-01 2 88082277 88082277 A G RGPD2 Silent p.T1422T 0.21 TCGA-73-A9RS-01 2 89544319 89544319 C A IGKV2-30 Missense_Mutation p.R102M 0.27 deleterious(0.03) benign(0.047) TCGA-73-A9RS-01 2 89544510 89544510 C A IGKV2-30 Silent p.P38P 0.28 TCGA-73-A9RS-01 2 90121878 90121878 C A IGKV1D-17 Silent p.A32A 0.22 TCGA-73-A9RS-01 2 90121879 90121879 A T IGKV1D-17 Missense_Mutation p.M33L 0.21 tolerated(1) benign(0) TCGA-73-A9RS-01 2 95944761 95944761 G A PROM2 Silent p.P381P 0.28 TCGA-73-A9RS-01 3 107524319 107524319 G C BBX 3'UTR 0.42 TCGA-73-A9RS-01 3 111261075 111261075 G A CD96 5'UTR 0.23 TCGA-73-A9RS-01 3 111603032 111603032 G T PHLDB2 Missense_Mutation p.E36D 0.27 tolerated_low_confidence(0.73) benign(0.009) TCGA-73-A9RS-01 3 112358336 112358336 G T CCDC80 Silent p.P139P 0.23 TCGA-73-A9RS-01 3 113186998 113186998 C A SPICE1 Silent p.R381R 0.47 TCGA-73-A9RS-01 3 114070624 114070624 C A ZBTB20 Missense_Mutation p.G101C 0.31 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 3 120461342 120461342 C G RABL3 Missense_Mutation p.D5H 0.47 deleterious(0) probably_damaging(0.911) TCGA-73-A9RS-01 3 121507280 121507280 C A IQCB1 Splice_Site p.X377_splice 0.21 TCGA-73-A9RS-01 3 122642473 122642473 G T SEMA5B Silent p.P475P 0.58 TCGA-73-A9RS-01 3 12421251 12421251 G C PPARG Missense_Mutation p.G44A 0.64 deleterious_low_confidence(0.03) possibly_damaging(0.851) TCGA-73-A9RS-01 3 129023677 129023677 T - HMCES 3'UTR 0.30 TCGA-73-A9RS-01 3 130289930 130289930 G T COL6A6 Missense_Mutation p.E890D 0.17 deleterious(0) possibly_damaging(0.747) TCGA-73-A9RS-01 3 130300526 130300526 C T COL6A6 Silent p.S1223S 0.14 TCGA-73-A9RS-01 3 133494392 133494392 C T TF Silent p.A601A 0.21 TCGA-73-A9RS-01 3 140695286 140695286 C G SLC25A36 Silent p.L309L 0.14 TCGA-73-A9RS-01 3 141289819 141289819 G T RASA2 Missense_Mutation p.R310L 0.18 deleterious(0.03) benign(0.004) TCGA-73-A9RS-01 3 145917796 145917796 T G PLSCR4 Missense_Mutation p.Y143S 0.10 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 3 14862611 14862611 C A FGD5 Missense_Mutation p.S678Y 0.24 deleterious(0.02) probably_damaging(0.953) TCGA-73-A9RS-01 3 161064047 161064047 C A SPTSSB Missense_Mutation p.C22F 0.15 deleterious(0) probably_damaging(0.99) TCGA-73-A9RS-01 3 164786951 164786951 C A SI Missense_Mutation p.R96S 0.44 tolerated(0.99) benign(0.017) TCGA-73-A9RS-01 3 164786953 164786953 T A SI Missense_Mutation p.R96W 0.43 deleterious(0.02) probably_damaging(0.971) TCGA-73-A9RS-01 3 169521858 169521858 G C LRRC34 Missense_Mutation p.L214V 0.51 tolerated(0.09) benign(0.386) TCGA-73-A9RS-01 3 170805260 170805260 G C TNIK Missense_Mutation p.D919E 0.18 tolerated(0.66) benign(0.016) TCGA-73-A9RS-01 3 172028665 172028665 G T FNDC3B Missense_Mutation p.W416C 0.13 deleterious(0) possibly_damaging(0.898) TCGA-73-A9RS-01 3 172472258 172472258 G T ECT2 Intron 0.23 TCGA-73-A9RS-01 3 184910252 184910252 T A EHHADH Missense_Mutation p.H645L 0.30 deleterious(0.01) probably_damaging(0.98) TCGA-73-A9RS-01 3 185434405 185434405 G T C3orf65 Missense_Mutation p.A80S 0.29 tolerated_low_confidence(0.47) possibly_damaging(0.567) TCGA-73-A9RS-01 3 186953411 186953411 G T MASP1 3'UTR 0.33 TCGA-73-A9RS-01 3 186978532 186978532 G T MASP1 Silent p.R182R 0.23 TCGA-73-A9RS-01 3 193052783 193052783 C A ATP13A5 Missense_Mutation p.G350V 0.20 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 3 194062901 194062901 G T CPN2 Silent p.A177A 0.16 TCGA-73-A9RS-01 3 194062973 194062973 C T CPN2 Silent p.Q153Q 0.21 TCGA-73-A9RS-01 3 194790608 194790608 C A XXYLT1 Nonsense_Mutation p.E340* 0.24 TCGA-73-A9RS-01 3 194790609 194790609 C G XXYLT1 Missense_Mutation p.M339I 0.24 deleterious(0.01) benign(0.406) TCGA-73-A9RS-01 3 196669408 196669408 C A NCBP2 5'UTR 0.38 TCGA-73-A9RS-01 3 38347982 38347982 C A SLC22A14 Nonsense_Mutation p.C155* 0.55 TCGA-73-A9RS-01 3 39151568 39151568 C T TTC21A Missense_Mutation p.P69L 0.52 tolerated(0.1) possibly_damaging(0.87) TCGA-73-A9RS-01 3 39450049 39450049 G T RPSA Intron 0.74 TCGA-73-A9RS-01 3 49759880 49759880 C A GMPPB Missense_Mutation p.A209S 0.16 tolerated(0.41) benign(0.331) TCGA-73-A9RS-01 3 51458068 51458068 T A VPRBP Missense_Mutation p.I357F 0.47 tolerated(0.07) benign(0.17) TCGA-73-A9RS-01 3 51749648 51749648 C G GRM2 Missense_Mutation p.T620S 0.21 deleterious(0.05) probably_damaging(1) TCGA-73-A9RS-01 3 56468585 56468585 G T ERC2 Missense_Mutation p.Q151K 0.31 deleterious(0.01) possibly_damaging(0.823) TCGA-73-A9RS-01 3 64085513 64085513 C A PRICKLE2 Silent p.V583V 0.28 TCGA-73-A9RS-01 3 71804163 71804163 G T GPR27 Silent p.T321T 0.56 TCGA-73-A9RS-01 3 73433677 73433677 G C PDZRN3 Missense_Mutation p.S680R 0.55 tolerated(0.21) possibly_damaging(0.749) TCGA-73-A9RS-01 3 74351911 74351911 A T CNTN3 Missense_Mutation p.S572R 0.31 deleterious(0.04) possibly_damaging(0.906) TCGA-73-A9RS-01 3 98073262 98073262 T A OR5K4 Missense_Mutation p.C189S 0.37 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 3 98519536 98519536 A G DCBLD2 Missense_Mutation p.F582S 0.24 deleterious(0.02) benign(0.32) TCGA-73-A9RS-01 4 10083014 10083014 G A WDR1 Silent p.P417P 0.24 TCGA-73-A9RS-01 4 100845964 100845964 C T DNAJB14 Intron 0.30 TCGA-73-A9RS-01 4 10446974 10446974 T C ZNF518B Missense_Mutation p.M327V 0.29 tolerated(0.15) benign(0.001) TCGA-73-A9RS-01 4 109004595 109004595 G T LEF1 Silent p.S185S 0.34 TCGA-73-A9RS-01 4 109681061 109681061 C - ETNPPL Frame_Shift_Del p.G60Dfs*12 0.21 TCGA-73-A9RS-01 4 110902089 110902089 G T EGF Missense_Mutation p.G777W 0.39 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 4 111470739 111470739 T A ENPEP Missense_Mutation p.L761M 0.45 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 4 118975788 118975788 A T NDST3 Silent p.P241P 0.28 TCGA-73-A9RS-01 4 119944679 119944679 C A SYNPO2 Missense_Mutation p.P67H 0.22 deleterious(0.01) possibly_damaging(0.605) TCGA-73-A9RS-01 4 123249270 123249270 G A KIAA1109 Silent p.E3669E 0.22 TCGA-73-A9RS-01 4 123814127 123814136 CCTAGCAACT - NUDT6 Frame_Shift_Del p.R266Sfs*16 0.23 TCGA-73-A9RS-01 4 126373115 126373115 C A FAT4 Missense_Mutation p.H3648Q 0.14 benign(0.004) TCGA-73-A9RS-01 4 134073239 134073239 C A PCDH10 Silent p.R648R 0.53 TCGA-73-A9RS-01 4 134111434 134111434 G A PCDH10 3'UTR 0.29 TCGA-73-A9RS-01 4 140810732 140810732 C A MAML3 Missense_Mutation p.V620L 0.39 benign(0) TCGA-73-A9RS-01 4 141847144 141847144 G T RNF150 Missense_Mutation p.A325D 0.29 deleterious(0) possibly_damaging(0.585) TCGA-73-A9RS-01 4 148453719 148453719 A T EDNRA Missense_Mutation p.I204F 0.27 deleterious(0.02) possibly_damaging(0.717) TCGA-73-A9RS-01 4 149357837 149357837 C A NR3C2 Missense_Mutation p.S59I 0.37 deleterious_low_confidence(0.02) possibly_damaging(0.766) TCGA-73-A9RS-01 4 15060856 15060856 G C CPEB2 Missense_Mutation p.D876H 0.17 deleterious_low_confidence(0.01) probably_damaging(0.951) TCGA-73-A9RS-01 4 152054228 152054228 C T SH3D19 Missense_Mutation p.E626K 0.49 deleterious(0) probably_damaging(0.968) TCGA-73-A9RS-01 4 156135041 156135041 T C NPY2R Intron 0.37 TCGA-73-A9RS-01 4 156136087 156136089 CAG AA NPY2R Nonsense_Mutation p.Y332* 0.28 TCGA-73-A9RS-01 4 156634544 156634544 G T GUCY1A3 Nonsense_Mutation p.E461* 0.43 TCGA-73-A9RS-01 4 159493962 159493962 G T RXFP1 Silent p.G54G 0.27 TCGA-73-A9RS-01 4 160243562 160243562 G T RAPGEF2 Missense_Mutation p.R145L 0.43 deleterious(0) possibly_damaging(0.817) TCGA-73-A9RS-01 4 162307629 162307629 C G FSTL5 Intron 0.44 TCGA-73-A9RS-01 4 169146679 169146679 C G DDX60 Splice_Site p.X1561_splice 0.37 TCGA-73-A9RS-01 4 169342939 169342939 C A DDX60L Missense_Mutation p.G789V 0.37 deleterious(0) probably_damaging(0.982) TCGA-73-A9RS-01 4 169342940 169342940 C T DDX60L Missense_Mutation p.G789R 0.36 deleterious(0.04) probably_damaging(0.976) TCGA-73-A9RS-01 4 175649778 175649778 G T GLRA3 Missense_Mutation p.D113E 0.42 tolerated(0.08) benign(0.247) TCGA-73-A9RS-01 4 177142401 177142401 A T ASB5 Missense_Mutation p.I192K 0.33 tolerated(0.05) benign(0.143) TCGA-73-A9RS-01 4 178882034 178882034 C G LINC01098 Missense_Mutation p.Q11E 0.19 deleterious_low_confidence(0.03) benign(0.095) TCGA-73-A9RS-01 4 20525527 20525527 G T SLIT2 Splice_Site p.X425_splice 0.20 TCGA-73-A9RS-01 4 23833295 23833295 C A PPARGC1A Missense_Mutation p.G105V 0.19 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 4 26614791 26614791 G T TBC1D19 Missense_Mutation p.A34S 0.48 tolerated(0.71) benign(0.006) TCGA-73-A9RS-01 4 3451105 3451105 G A HGFAC Missense_Mutation p.D643N 0.46 tolerated(0.08) benign(0.05) TCGA-73-A9RS-01 4 37636544 37636544 C A RELL1 Silent p.R215R 0.12 TCGA-73-A9RS-01 4 3768919 3768919 G T ADRA2C Missense_Mutation p.G196C 0.33 deleterious(0.02) probably_damaging(0.962) TCGA-73-A9RS-01 4 4285441 4285441 C A LYAR Missense_Mutation p.G10V 0.13 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 4 44177100 44177100 G C KCTD8 Missense_Mutation p.Q377E 0.25 tolerated(0.81) benign(0.033) TCGA-73-A9RS-01 4 46263943 46263943 C T GABRA2 Silent p.K353K 0.52 TCGA-73-A9RS-01 4 48993490 48993490 G A CWH43 Silent p.Q85Q 0.32 TCGA-73-A9RS-01 4 52945017 52945017 C T SPATA18 Silent p.V379V 0.21 TCGA-73-A9RS-01 4 55139810 55139810 G C PDGFRA Missense_Mutation p.A491P 0.33 tolerated(0.29) benign(0.066) TCGA-73-A9RS-01 4 55979502 55979502 G T KDR Silent p.T315T 0.36 TCGA-73-A9RS-01 4 66356101 66356101 G A EPHA5 Nonsense_Mutation p.Q466* 0.18 TCGA-73-A9RS-01 4 68472064 68472064 C A STAP1 Missense_Mutation p.H293N 0.34 tolerated_low_confidence(0.13) benign(0) TCGA-73-A9RS-01 4 69795505 69795505 C G UGT2A3 3'UTR 0.44 TCGA-73-A9RS-01 4 69964287 69964287 G T UGT2B7 Missense_Mutation p.G251W 0.16 deleterious(0) probably_damaging(0.987) TCGA-73-A9RS-01 4 70074081 70074081 C A UGT2B11 Missense_Mutation p.K330N 0.32 deleterious(0) possibly_damaging(0.61) TCGA-73-A9RS-01 4 70710007 70710007 G C SULT1E1 Nonsense_Mutation p.S215* 0.15 TCGA-73-A9RS-01 4 70823365 70823365 A G CSN2 Missense_Mutation p.V101A 0.10 tolerated(0.36) possibly_damaging(0.539) TCGA-73-A9RS-01 4 71275634 71275634 C A PROL1 Missense_Mutation p.P197T 0.40 tolerated_low_confidence(0.64) unknown(0) TCGA-73-A9RS-01 4 76530806 76530806 C A CDKL2 Silent p.V185V 0.20 TCGA-73-A9RS-01 4 76530808 76530808 C A CDKL2 Missense_Mutation p.V185L 0.18 deleterious(0.03) benign(0.121) TCGA-73-A9RS-01 4 76703981 76703981 G T USO1 Missense_Mutation p.Q277H 0.54 deleterious(0.02) possibly_damaging(0.864) TCGA-73-A9RS-01 4 77817950 77817950 C A SOWAHB Silent p.P351P 0.18 TCGA-73-A9RS-01 4 78740448 78740450 AAC - CNOT6L Intron 0.29 TCGA-73-A9RS-01 4 79284668 79284668 C A FRAS1 Missense_Mutation p.D808E 0.21 benign(0.081) TCGA-73-A9RS-01 4 79373036 79373036 A G FRAS1 Missense_Mutation p.S2192G 0.14 benign(0.002) TCGA-73-A9RS-01 4 79399039 79399039 A T FRAS1 Missense_Mutation p.N2641I 0.19 possibly_damaging(0.866) TCGA-73-A9RS-01 4 80246771 80246771 G T NAA11 Silent p.A87A 0.15 TCGA-73-A9RS-01 4 81123225 81123225 G T PRDM8 Silent p.G203G 0.16 TCGA-73-A9RS-01 4 81974740 81974740 T A BMP3 3'UTR 0.16 TCGA-73-A9RS-01 4 82366734 82366734 C T RASGEF1B Missense_Mutation p.V292I 0.18 deleterious(0.01) possibly_damaging(0.767) TCGA-73-A9RS-01 4 85762349 85762349 C A WDFY3 Missense_Mutation p.W124C 0.28 deleterious(0) possibly_damaging(0.508) TCGA-73-A9RS-01 4 87643463 87643463 C - PTPN13 Frame_Shift_Del p.R497Dfs*5 0.24 TCGA-73-A9RS-01 4 94138155 94138155 C A GRID2 Intron 0.31 TCGA-73-A9RS-01 5 102513676 102513676 A T PPIP5K2 Nonsense_Mutation p.R917* 0.36 TCGA-73-A9RS-01 5 10461353 10461353 G T ROPN1L Missense_Mutation p.G159W 0.33 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 5 109103236 109103236 G A MAN2A1 Missense_Mutation p.G279E 0.34 deleterious(0.03) probably_damaging(0.998) TCGA-73-A9RS-01 5 10973630 10973630 G T CTNND2 Missense_Mutation p.R1205S 0.18 deleterious(0) probably_damaging(0.935) TCGA-73-A9RS-01 5 112849630 112849630 C T YTHDC2 Missense_Mutation p.A13V 0.62 tolerated_low_confidence(0.4) benign(0) TCGA-73-A9RS-01 5 115783386 115783386 G A SEMA6A Silent p.C672C 0.26 TCGA-73-A9RS-01 5 121786482 121786482 C A SNCAIP Missense_Mutation p.A647D 0.31 tolerated(0.08) benign(0.424) TCGA-73-A9RS-01 5 1235760 1235760 A T SLC6A18 Missense_Mutation p.I202F 0.46 deleterious(0.01) probably_damaging(0.996) TCGA-73-A9RS-01 5 127645068 127645068 G T FBN2 Silent p.R1742R 0.34 TCGA-73-A9RS-01 5 127729062 127729062 C A FBN2 Splice_Site p.X411_splice 0.31 TCGA-73-A9RS-01 5 128351660 128351660 G T SLC27A6 Missense_Mutation p.R351I 0.29 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 5 131323773 131323773 C A ACSL6 Missense_Mutation p.G267W 0.28 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 5 131915135 131915135 G T RAD50 Missense_Mutation p.W164C 0.27 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 5 137665328 137665328 G - CDC25C Frame_Shift_Del p.P68Qfs*15 0.17 TCGA-73-A9RS-01 5 13780953 13780953 T A DNAH5 Missense_Mutation p.Q2979L 0.21 benign(0.227) TCGA-73-A9RS-01 5 139743362 139743362 C G SLC4A9 Missense_Mutation p.P401A 0.27 tolerated(0.53) benign(0.039) TCGA-73-A9RS-01 5 140021497 140021497 C G TMCO6 Missense_Mutation p.S119R 0.36 deleterious(0.05) possibly_damaging(0.784) TCGA-73-A9RS-01 5 140174539 140174539 G A PCDHA2 5'Flank 0.34 TCGA-73-A9RS-01 5 140241151 140241151 G A AC005609.1 3'UTR 0.25 TCGA-73-A9RS-01 5 140256667 140256667 C T PCDHA12 Missense_Mutation p.A537V 0.04 deleterious_low_confidence(0.01) probably_damaging(0.923) TCGA-73-A9RS-01 5 140263840 140263840 G T PCDHA13 Missense_Mutation p.A663S 0.20 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-73-A9RS-01 5 140503044 140503044 G T PCDHB4 Silent p.S488S 0.27 TCGA-73-A9RS-01 5 140531401 140531401 C A PCDHB6 Silent p.A521A 0.35 TCGA-73-A9RS-01 5 140554106 140554106 C A PCDHB7 Missense_Mutation p.P564T 0.25 deleterious_low_confidence(0) probably_damaging(0.924) TCGA-73-A9RS-01 5 140559569 140559569 C T PCDHB8 Missense_Mutation p.P652S 0.19 deleterious_low_confidence(0.04) benign(0.321) TCGA-73-A9RS-01 5 140750137 140750137 G A PCDHGB3 Missense_Mutation p.G59E 0.27 tolerated(0.24) benign(0.109) TCGA-73-A9RS-01 5 140794595 140794595 C A PCDHGA10 Missense_Mutation p.P618Q 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-73-A9RS-01 5 140797825 140797826 - T PCDHGB7 Frame_Shift_Ins p.R134Sfs*4 0.17 TCGA-73-A9RS-01 5 140802315 140802315 T C PCDHGA11 Silent p.S507S 0.25 TCGA-73-A9RS-01 5 141358246 141358246 G T RNF14 Missense_Mutation p.G229C 0.25 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 5 145428760 145428760 C A SH3RF2 Missense_Mutation p.T425N 0.17 deleterious(0.02) probably_damaging(0.956) TCGA-73-A9RS-01 5 148406562 148406562 G T SH3TC2 Silent p.A911A 0.29 TCGA-73-A9RS-01 5 148422255 148422255 A C SH3TC2 Splice_Site p.X177_splice 0.25 TCGA-73-A9RS-01 5 149357626 149357626 T C SLC26A2 Silent p.P137P 0.27 TCGA-73-A9RS-01 5 149562374 149562374 C T CDX1 Silent p.D163D 0.28 TCGA-73-A9RS-01 5 149585129 149585129 C A SLC6A7 Silent p.L548L 0.21 TCGA-73-A9RS-01 5 150682934 150682934 G A SLC36A3 5'UTR 0.21 TCGA-73-A9RS-01 5 153413906 153413906 C G FAM114A2 Missense_Mutation p.R81T 0.33 deleterious(0.01) benign(0.065) TCGA-73-A9RS-01 5 156533827 156533827 T A HAVCR2 Missense_Mutation p.R69W 0.41 tolerated(0.19) benign(0.047) TCGA-73-A9RS-01 5 16067900 16067900 G T MARCH11 Missense_Mutation p.L297I 0.19 tolerated(0.12) possibly_damaging(0.878) TCGA-73-A9RS-01 5 161580098 161580098 G T GABRG2 Splice_Site p.X425_splice 0.21 TCGA-73-A9RS-01 5 170145863 170145863 G T KCNIP1 Missense_Mutation p.V66F 0.22 tolerated(0.24) possibly_damaging(0.763) TCGA-73-A9RS-01 5 172560769 172560769 G C CREBRF 3'UTR 0.45 TCGA-73-A9RS-01 5 176011696 176011696 C T CDHR2 Missense_Mutation p.P805L 0.22 deleterious(0) possibly_damaging(0.852) TCGA-73-A9RS-01 5 178391968 178391968 C G ZNF454 Missense_Mutation p.S188C 0.26 deleterious(0.02) possibly_damaging(0.547) TCGA-73-A9RS-01 5 179193118 179193118 G C MAML1 Missense_Mutation p.Q369H 0.39 tolerated(0.33) benign(0.142) TCGA-73-A9RS-01 5 180048166 180048166 C G FLT4 Missense_Mutation p.G703R 0.19 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 5 180055952 180055952 C T FLT4 Missense_Mutation p.A345T 0.27 tolerated(0.1) possibly_damaging(0.616) TCGA-73-A9RS-01 5 19473222 19473222 G T CDH18 3'UTR 0.38 TCGA-73-A9RS-01 5 205529 205529 G A CCDC127 Silent p.V222V 0.53 TCGA-73-A9RS-01 5 22078561 22078561 C A CDH12 Silent p.V75V 0.18 TCGA-73-A9RS-01 5 23526528 23526528 C A PRDM9 Missense_Mutation p.P444Q 0.47 tolerated(0.45) probably_damaging(0.927) TCGA-73-A9RS-01 5 23526718 23526718 G T PRDM9 Silent p.G507G 0.22 TCGA-73-A9RS-01 5 24491731 24491731 G T CDH10 Missense_Mutation p.S610R 0.13 deleterious(0.01) probably_damaging(0.944) TCGA-73-A9RS-01 5 24593667 24593667 C A CDH10 5'UTR 0.46 TCGA-73-A9RS-01 5 26885793 26885793 G T CDH9 Silent p.A604A 0.33 TCGA-73-A9RS-01 5 31448673 31448673 C A DROSHA Missense_Mutation p.D955Y 0.29 deleterious(0) possibly_damaging(0.76) TCGA-73-A9RS-01 5 35032921 35032921 G A AGXT2 Missense_Mutation p.P229S 0.23 deleterious(0) probably_damaging(0.982) TCGA-73-A9RS-01 5 35033626 35033626 A T AGXT2 Missense_Mutation p.L205H 0.35 deleterious(0.03) benign(0.129) TCGA-73-A9RS-01 5 35954472 35954472 C A UGT3A1 Silent p.A468A 0.37 TCGA-73-A9RS-01 5 37815827 37815827 G T GDNF Missense_Mutation p.L205M 0.21 deleterious(0.01) probably_damaging(1) TCGA-73-A9RS-01 5 37816116 37816116 C A GDNF Silent p.R108R 0.28 TCGA-73-A9RS-01 5 38451498 38451498 C - EGFLAM Frame_Shift_Del p.M885* 0.26 TCGA-73-A9RS-01 5 38463112 38463112 G - EGFLAM Frame_Shift_Del 0.32 TCGA-73-A9RS-01 5 39202878 39202878 G T FYB Missense_Mutation p.P72Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 5 40767659 40767659 T C PRKAA1 Missense_Mutation p.T259A 0.33 deleterious(0.01) benign(0.281) TCGA-73-A9RS-01 5 40937779 40937779 C G C7 Missense_Mutation p.S185C 0.27 deleterious(0.02) benign(0.064) TCGA-73-A9RS-01 5 41382483 41382483 C T PLCXD3 Missense_Mutation p.G86D 0.33 tolerated(0.22) benign(0.005) TCGA-73-A9RS-01 5 41927125 41927125 A T FBXO4 Missense_Mutation p.Q67L 0.20 deleterious(0.01) possibly_damaging(0.743) TCGA-73-A9RS-01 5 50683345 50683345 C A ISL1 Silent p.A80A 0.27 TCGA-73-A9RS-01 5 53751710 53751710 G A HSPB3 Missense_Mutation p.D31N 0.27 tolerated(0.17) benign(0.025) TCGA-73-A9RS-01 5 54326405 54326405 T A GZMK Missense_Mutation p.L119Q 0.33 deleterious(0.02) probably_damaging(1) TCGA-73-A9RS-01 5 54635958 54635958 G T SKIV2L2 Missense_Mutation p.M212I 0.22 tolerated(0.06) benign(0.042) TCGA-73-A9RS-01 5 57752908 57752908 C G PLK2 Silent p.P340P 0.48 TCGA-73-A9RS-01 5 63894252 63894252 G A RGS7BP Silent p.L224L 0.24 TCGA-73-A9RS-01 5 80388781 80388781 G T RASGRF2 Splice_Site p.X517_splice 0.31 TCGA-73-A9RS-01 5 83550015 83550015 G C EDIL3 Missense_Mutation p.P28R 0.31 tolerated(0.25) benign(0.292) TCGA-73-A9RS-01 5 89948204 89948204 C A GPR98 Missense_Mutation p.S1153Y 0.36 benign(0.029) TCGA-73-A9RS-01 5 92923744 92923744 C T NR2F1 Silent p.A195A 0.33 TCGA-73-A9RS-01 5 93076817 93076817 C G POU5F2 Silent p.V151V 0.12 TCGA-73-A9RS-01 5 93856567 93856567 C A KIAA0825 Missense_Mutation p.W119L 0.14 tolerated(1) benign(0.05) TCGA-73-A9RS-01 5 94991893 94991893 G A RFESD Silent p.R171R 0.24 TCGA-73-A9RS-01 5 9629153 9629153 A T TAS2R1 3'UTR 0.14 TCGA-73-A9RS-01 5 9629230 9629230 G T TAS2R1 3'UTR 0.23 TCGA-73-A9RS-01 5 96430524 96430524 G T LIX1 Silent p.I259I 0.24 TCGA-73-A9RS-01 6 102250204 102250204 A G GRIK2 Splice_Site p.X366_splice 0.56 TCGA-73-A9RS-01 6 112466104 112466104 G T LAMA4 Silent p.L795L 0.62 TCGA-73-A9RS-01 6 117246629 117246629 T G RFX6 Silent p.A564A 0.34 TCGA-73-A9RS-01 6 117725583 117725583 C A ROS1 Missense_Mutation p.D100Y 0.58 tolerated(0.11) benign(0.026) TCGA-73-A9RS-01 6 123539845 123539845 G T TRDN Nonsense_Mutation p.Y697* 0.57 TCGA-73-A9RS-01 6 130762925 130762925 A T TMEM200A Missense_Mutation p.D453V 0.33 deleterious(0.01) probably_damaging(0.963) TCGA-73-A9RS-01 6 131199264 131199264 G A EPB41L2 Silent p.L675L 0.12 TCGA-73-A9RS-01 6 131277265 131277265 C A EPB41L2 Nonsense_Mutation p.E121* 0.59 TCGA-73-A9RS-01 6 143093021 143093021 C A HIVEP2 Missense_Mutation p.G952V 0.68 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 6 150290487 150290487 G T ULBP1 Missense_Mutation p.D206Y 0.62 deleterious(0) possibly_damaging(0.535) TCGA-73-A9RS-01 6 150322190 150322190 G T RAET1K RNA 0.27 TCGA-73-A9RS-01 6 151673580 151673580 C A AKAP12 Missense_Mutation p.H1352N 0.24 deleterious(0.01) benign(0.032) TCGA-73-A9RS-01 6 155597480 155597480 C A CLDN20 Missense_Mutation p.N209K 0.46 tolerated(0.63) benign(0.003) TCGA-73-A9RS-01 6 159188316 159188316 C T EZR Missense_Mutation p.E525K 0.27 tolerated(0.79) benign(0.034) TCGA-73-A9RS-01 6 165715671 165715671 C A C6orf118 Missense_Mutation p.R47L 0.64 tolerated(0.11) possibly_damaging(0.456) TCGA-73-A9RS-01 6 17421895 17421895 G T CAP2 Missense_Mutation p.G37C 0.14 deleterious(0) probably_damaging(0.995) TCGA-73-A9RS-01 6 17608703 17608703 G A FAM8A1 3'UTR 0.50 TCGA-73-A9RS-01 6 25972150 25972150 G C TRIM38 Missense_Mutation p.Q187H 0.15 tolerated(1) benign(0.003) TCGA-73-A9RS-01 6 26240661 26240661 G T HIST1H4F Missense_Mutation p.G3V 0.36 tolerated_low_confidence(0.05) unknown(0) TCGA-73-A9RS-01 6 28554155 28554155 C - SCAND3 Frame_Shift_Del p.E114Sfs*11 0.18 TCGA-73-A9RS-01 6 29394996 29394996 C A OR11A1 Silent p.R141R 0.47 TCGA-73-A9RS-01 6 29394997 29394997 C A OR11A1 Missense_Mutation p.R141L 0.49 tolerated(1) benign(0) TCGA-73-A9RS-01 6 29524042 29524042 C A UBD Missense_Mutation p.R38L 0.26 deleterious(0.01) possibly_damaging(0.676) TCGA-73-A9RS-01 6 30882796 30882796 G A VARS2 Silent p.E91E 0.19 TCGA-73-A9RS-01 6 30951678 30951678 C A MUC21 5'UTR 0.57 TCGA-73-A9RS-01 6 31079774 31079774 G A C6orf15 Missense_Mutation p.A121V 0.22 deleterious(0.01) possibly_damaging(0.866) TCGA-73-A9RS-01 6 31856520 31856520 C A EHMT2 Silent p.V407V 0.14 TCGA-73-A9RS-01 6 32164147 32164147 C G NOTCH4 Missense_Mutation p.R1751P 0.17 tolerated(0.11) probably_damaging(0.951) TCGA-73-A9RS-01 6 32521697 32521697 C A RNU1-61P 5'Flank 0.47 TCGA-73-A9RS-01 6 33258108 33258108 G T PFDN6 Silent p.L47L 0.19 TCGA-73-A9RS-01 6 33659415 33659415 G T ITPR3 Nonsense_Mutation p.G2417* 0.56 TCGA-73-A9RS-01 6 38702362 38702362 C T DNAH8 Silent p.C24C 0.48 TCGA-73-A9RS-01 6 38980060 38980060 A G DNAH8 Missense_Mutation p.R4264G 0.27 probably_damaging(1) TCGA-73-A9RS-01 6 39161948 39161948 C A KCNK5 Missense_Mutation p.A211S 0.12 deleterious(0) probably_damaging(0.909) TCGA-73-A9RS-01 6 40359937 40359937 C A LRFN2 Silent p.R705R 0.38 TCGA-73-A9RS-01 6 42929991 42929991 C A GNMT Missense_Mutation p.T83K 0.37 deleterious(0.01) possibly_damaging(0.7) TCGA-73-A9RS-01 6 43276057 43276057 G T CRIP3 Missense_Mutation p.A45E 0.34 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 6 44971389 44971389 C A SUPT3H Splice_Site p.X179_splice 0.33 TCGA-73-A9RS-01 6 47776051 47776051 C A OPN5 Nonsense_Mutation p.Y306* 0.24 TCGA-73-A9RS-01 6 47976616 47976616 T A PTCHD4 Missense_Mutation p.S221C 0.22 deleterious(0) probably_damaging(0.997) TCGA-73-A9RS-01 6 52617685 52617685 T G GSTA2 Missense_Mutation p.K127N 0.22 deleterious(0.03) benign(0.053) TCGA-73-A9RS-01 6 52617715 52617715 T C GSTA2 Silent p.Q117Q 0.22 TCGA-73-A9RS-01 6 52617717 52617717 G T GSTA2 Missense_Mutation p.Q117K 0.23 tolerated(1) benign(0) TCGA-73-A9RS-01 6 54791169 54791169 G T FAM83B Missense_Mutation p.V149F 0.24 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 6 55214916 55214916 T C GFRAL Missense_Mutation p.W115R 0.24 tolerated(0.05) benign(0.021) TCGA-73-A9RS-01 6 56471292 56471292 C T DST Intron 0.34 TCGA-73-A9RS-01 6 62390842 62390842 G T KHDRBS2 3'UTR 0.20 TCGA-73-A9RS-01 6 70070872 70070872 G T BAI3 Missense_Mutation p.S1236I 0.20 deleterious(0) benign(0.276) TCGA-73-A9RS-01 6 70909395 70909395 G A COL19A1 Missense_Mutation p.G1060R 0.72 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 6 74072622 74072622 G T KHDC3L Splice_Site p.X57_splice 0.58 TCGA-73-A9RS-01 6 75884869 75884869 T A COL12A1 Silent p.T865T 0.30 TCGA-73-A9RS-01 6 76023678 76023678 G T FILIP1 Missense_Mutation p.P624T 0.53 tolerated(0.46) benign(0.003) TCGA-73-A9RS-01 6 76388386 76388386 A T SENP6 Missense_Mutation p.I646F 0.57 deleterious(0.02) possibly_damaging(0.572) TCGA-73-A9RS-01 6 76728455 76728455 C A IMPG1 Missense_Mutation p.A263S 0.34 tolerated(0.08) possibly_damaging(0.658) TCGA-73-A9RS-01 6 7862660 7862660 G C BMP6 Missense_Mutation p.S378T 0.33 tolerated(0.23) benign(0.08) TCGA-73-A9RS-01 6 83926299 83926299 A T ME1 Missense_Mutation p.V489E 0.29 deleterious(0) probably_damaging(0.997) TCGA-73-A9RS-01 6 84865198 84865198 C G KIAA1009 Missense_Mutation p.R938T 0.74 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 6 90605613 90605613 C A GJA10 Missense_Mutation p.H476N 0.53 tolerated(0.1) benign(0.002) TCGA-73-A9RS-01 6 97052770 97052770 T A FHL5 Missense_Mutation p.C102S 0.26 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 7 100395028 100395028 T A ZAN Silent p.P2677P 0.43 TCGA-73-A9RS-01 7 100686316 100686316 C A MUC17 Missense_Mutation p.S3873R 0.46 benign(0.01) TCGA-73-A9RS-01 7 106508003 106508003 G A PIK3CG 5'UTR 0.43 TCGA-73-A9RS-01 7 106844010 106844010 T A COG5 Missense_Mutation p.Y845F 0.22 tolerated(0.14) probably_damaging(0.919) TCGA-73-A9RS-01 7 112407801 112407801 T A TMEM168 Splice_Site p.X516_splice 0.33 TCGA-73-A9RS-01 7 113558291 113558291 C A PPP1R3A Missense_Mutation p.G254V 0.17 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 7 113558292 113558292 C A PPP1R3A Missense_Mutation p.G254C 0.17 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 7 113558294 113558294 T A PPP1R3A Missense_Mutation p.K253I 0.17 deleterious(0) probably_damaging(0.98) TCGA-73-A9RS-01 7 113558700 113558700 C A PPP1R3A Missense_Mutation p.D118Y 0.51 deleterious(0) possibly_damaging(0.862) TCGA-73-A9RS-01 7 121773863 121773863 T A AASS 5'UTR 0.38 TCGA-73-A9RS-01 7 126173671 126173672 AC - GRM8 Frame_Shift_Del p.F589Cfs*20 0.35 TCGA-73-A9RS-01 7 126883045 126883045 C A GRM8 Missense_Mutation p.G72W 0.26 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 7 128482922 128482922 A C FLNC Missense_Mutation p.I822L 0.33 deleterious(0.03) probably_damaging(0.996) TCGA-73-A9RS-01 7 128486053 128486053 G A FLNC Missense_Mutation p.R1267Q 0.26 deleterious(0.03) probably_damaging(0.971) TCGA-73-A9RS-01 7 134896283 134896283 C A WDR91 5'UTR 0.29 TCGA-73-A9RS-01 7 135421870 135421870 C A FAM180A Nonsense_Mutation p.E52* 0.19 TCGA-73-A9RS-01 7 136699566 136699566 G T CHRM2 Splice_Site 0.25 TCGA-73-A9RS-01 7 138447725 138447725 T A ATP6V0A4 Missense_Mutation p.N113Y 0.40 deleterious(0) probably_damaging(0.926) TCGA-73-A9RS-01 7 139229122 139229122 G T CLEC2L 3'UTR 0.56 TCGA-73-A9RS-01 7 140301671 140301671 C A DENND2A Missense_Mutation p.G176V 0.21 tolerated(0.33) benign(0.439) TCGA-73-A9RS-01 7 140500229 140500229 C A BRAF Missense_Mutation p.A305S 0.20 tolerated(0.6) benign(0.004) TCGA-73-A9RS-01 7 141722133 141722133 C A MGAM Missense_Mutation p.P259H 0.45 deleterious(0) probably_damaging(0.996) TCGA-73-A9RS-01 7 142423547 142423547 C G TRBV27 Nonsense_Mutation p.S68* 0.35 TCGA-73-A9RS-01 7 142458438 142458438 G T PRSS1 Missense_Mutation p.V25F 0.11 deleterious(0.02) possibly_damaging(0.661) TCGA-73-A9RS-01 7 142479941 142479941 G T PRSS3P2 RNA 0.09 TCGA-73-A9RS-01 7 142498789 142498789 C A TRBC2 Silent p.S22S 0.06 TCGA-73-A9RS-01 7 142563841 142563841 G T EPHB6 Missense_Mutation p.C410F 0.20 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 7 142583205 142583205 G C TRPV6 Missense_Mutation p.F19L 0.31 tolerated(1) benign(0) TCGA-73-A9RS-01 7 142640076 142640076 C A KEL Silent p.L609L 0.21 TCGA-73-A9RS-01 7 143016946 143016946 G T CLCN1 Missense_Mutation p.E93D 0.16 tolerated(0.08) benign(0.013) TCGA-73-A9RS-01 7 143807026 143807026 G A OR2A2 Missense_Mutation p.M117I 0.41 deleterious(0.01) possibly_damaging(0.591) TCGA-73-A9RS-01 7 148979223 148979223 G T ZNF783 Missense_Mutation p.R477L 0.18 deleterious(0.01) possibly_damaging(0.75) TCGA-73-A9RS-01 7 149191108 149191108 C A ZNF746 Missense_Mutation p.R126S 0.39 deleterious(0) benign(0.079) TCGA-73-A9RS-01 7 1516224 1516224 C A INTS1 Silent p.R1711R 0.22 TCGA-73-A9RS-01 7 151853111 151853111 C A KMT2C Missense_Mutation p.Q3948H 0.23 benign(0.008) TCGA-73-A9RS-01 7 151921100 151921100 C T KMT2C Missense_Mutation p.R1108K 0.44 possibly_damaging(0.463) TCGA-73-A9RS-01 7 151945083 151945083 C A KMT2C Missense_Mutation p.M812I 0.07 benign(0.027) TCGA-73-A9RS-01 7 152551558 152551558 G T ACTR3B Missense_Mutation p.V393F 0.22 tolerated(0.15) benign(0.131) TCGA-73-A9RS-01 7 154379897 154379897 C T DPP6 Intron 0.33 TCGA-73-A9RS-01 7 157046684 157046684 G T UBE3C Missense_Mutation p.V911F 0.19 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 7 157060540 157060540 G A UBE3C 3'UTR 0.29 TCGA-73-A9RS-01 7 21678604 21678604 G C DNAH11 Missense_Mutation p.R1627P 0.12 probably_damaging(0.987) TCGA-73-A9RS-01 7 21934252 21934252 C A DNAH11 Silent p.V4261V 0.23 TCGA-73-A9RS-01 7 23775386 23775386 G A STK31 Missense_Mutation p.S238N 0.41 tolerated(0.59) benign(0.002) TCGA-73-A9RS-01 7 26236065 26236065 C A HNRNPA2B1 Missense_Mutation p.G217V 0.33 deleterious(0.05) unknown(0) TCGA-73-A9RS-01 7 2689577 2689577 G T TTYH3 Missense_Mutation p.A276S 0.34 tolerated(0.18) benign(0.008) TCGA-73-A9RS-01 7 27205022 27205022 C G HOXA9 Missense_Mutation p.A19P 0.16 tolerated(0.23) probably_damaging(0.986) TCGA-73-A9RS-01 7 34091581 34091581 G T BMPER Missense_Mutation p.R262M 0.36 deleterious(0.04) benign(0.229) TCGA-73-A9RS-01 7 37780041 37780041 G C GPR141 Missense_Mutation p.V16L 0.43 tolerated(0.71) benign(0) TCGA-73-A9RS-01 7 37889901 37889901 G C NME8 Missense_Mutation p.Q11H 0.18 deleterious(0) possibly_damaging(0.459) TCGA-73-A9RS-01 7 37960226 37960226 G T EPDR1 5'UTR 0.22 TCGA-73-A9RS-01 7 38288996 38288996 C G TRGC2 Missense_Mutation p.G60A 0.23 deleterious(0.01) probably_damaging(1) TCGA-73-A9RS-01 7 42088268 42088268 C A GLI3 Silent p.T167T 0.27 TCGA-73-A9RS-01 7 4218194 4218194 G T SDK1 Missense_Mutation p.V1692L 0.36 tolerated(0.16) benign(0.059) TCGA-73-A9RS-01 7 43495902 43495902 A G HECW1 Missense_Mutation p.E836G 0.50 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 7 43580775 43580775 G T HECW1 Missense_Mutation p.G1345C 0.40 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 7 43580776 43580776 G T HECW1 Missense_Mutation p.G1345V 0.40 deleterious(0) probably_damaging(0.992) TCGA-73-A9RS-01 7 44102337 44102337 G T PGAM2 3'UTR 0.30 TCGA-73-A9RS-01 7 44187288 44187288 C A GCK Missense_Mutation p.R276L 0.17 tolerated(0.1) possibly_damaging(0.752) TCGA-73-A9RS-01 7 47879103 47879103 G T PKD1L1 Missense_Mutation p.H1904N 0.21 tolerated(0.33) benign(0.359) TCGA-73-A9RS-01 7 47942044 47942044 G A PKD1L1 Nonsense_Mutation p.Q666* 0.36 TCGA-73-A9RS-01 7 48146469 48146469 G T UPP1 Splice_Site p.X146_splice 0.30 TCGA-73-A9RS-01 7 48352823 48352823 C T ABCA13 Nonsense_Mutation p.Q3226* 0.19 TCGA-73-A9RS-01 7 4874585 4874585 C A RADIL Missense_Mutation p.D357Y 0.29 deleterious(0) probably_damaging(0.959) TCGA-73-A9RS-01 7 5427970 5427970 G C TNRC18 Silent p.G495G 0.56 TCGA-73-A9RS-01 7 56051451 56051451 G T GBAS Missense_Mutation p.D159Y 0.36 deleterious(0) benign(0.042) TCGA-73-A9RS-01 7 56084995 56084995 T C PSPH Missense_Mutation p.H118R 0.29 deleterious(0.04) probably_damaging(0.965) TCGA-73-A9RS-01 7 56148840 56148840 G A PHKG1 Silent p.H389H 0.21 TCGA-73-A9RS-01 7 6210584 6210584 G C CYTH3 Silent p.A196A 0.21 TCGA-73-A9RS-01 7 64452101 64452101 C A ERV3-1 Missense_Mutation p.G435V 0.64 deleterious(0) probably_damaging(0.998) TCGA-73-A9RS-01 7 70254931 70254931 A C AUTS2 Missense_Mutation p.K910T 0.19 deleterious(0.01) probably_damaging(0.969) TCGA-73-A9RS-01 7 7278121 7278121 G T C1GALT1 Missense_Mutation p.Q152H 0.18 tolerated(0.68) benign(0.019) TCGA-73-A9RS-01 7 73609093 73609093 G T EIF4H Silent p.G164G 0.23 TCGA-73-A9RS-01 7 74303871 74303871 C G STAG3L2 RNA 0.25 TCGA-73-A9RS-01 7 81392185 81392185 C A HGF Missense_Mutation p.G31V 0.22 deleterious(0.02) possibly_damaging(0.611) TCGA-73-A9RS-01 7 81596949 81596949 C G CACNA2D1 Missense_Mutation p.W809S 0.45 deleterious(0) probably_damaging(0.979) TCGA-73-A9RS-01 7 87037474 87037474 T A ABCB4 Missense_Mutation p.Q1053L 0.19 deleterious(0) benign(0.181) TCGA-73-A9RS-01 7 87041313 87041313 A G ABCB4 Silent p.T940T 0.24 TCGA-73-A9RS-01 7 87466042 87466042 T A SLC25A40 Intron 0.22 TCGA-73-A9RS-01 7 92821634 92821634 G T HEPACAM2 Missense_Mutation p.Q440K 0.49 tolerated(0.12) benign(0.188) TCGA-73-A9RS-01 7 93072981 93072981 G T CALCR Missense_Mutation p.T280K 0.46 deleterious(0.03) probably_damaging(0.999) TCGA-73-A9RS-01 7 96747092 96747092 G T ACN9 Silent p.L19L 0.19 TCGA-73-A9RS-01 8 102381373 102381373 G C NACAP1 RNA 0.35 TCGA-73-A9RS-01 8 103297969 103297969 T G UBR5 Missense_Mutation p.L1752F 0.26 deleterious(0) probably_damaging(0.986) TCGA-73-A9RS-01 8 104898202 104898202 C T RIMS2 Missense_Mutation p.H459Y 0.34 tolerated_low_confidence(0.05) probably_damaging(0.921) TCGA-73-A9RS-01 8 104930676 104930676 C A RIMS2 Missense_Mutation p.P682T 0.33 deleterious_low_confidence(0) possibly_damaging(0.853) TCGA-73-A9RS-01 8 105264110 105264110 G T RIMS2 3'Flank 0.33 TCGA-73-A9RS-01 8 108264028 108264028 G T ANGPT1 3'UTR 0.45 TCGA-73-A9RS-01 8 110397857 110397857 G A PKHD1L1 Silent p.L189L 0.35 TCGA-73-A9RS-01 8 110509204 110509204 G T PKHD1L1 Missense_Mutation p.G3462W 0.19 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 8 113256633 113256633 G - CSMD3 Frame_Shift_Del p.I3465Ffs*10 0.41 TCGA-73-A9RS-01 8 113267574 113267574 G T CSMD3 Missense_Mutation p.F3315L 0.17 deleterious(0.02) possibly_damaging(0.602) TCGA-73-A9RS-01 8 113657455 113657456 CT A CSMD3 Splice_Site p.X1065_splice 0.29 TCGA-73-A9RS-01 8 11994927 11994927 G T USP17L2 Missense_Mutation p.P448H 0.17 deleterious(0) possibly_damaging(0.852) TCGA-73-A9RS-01 8 120118097 120118097 G T COLEC10 Missense_Mutation p.K167N 0.36 deleterious(0) probably_damaging(0.982) TCGA-73-A9RS-01 8 120865380 120865380 T C DSCC1 Silent p.A86A 0.39 TCGA-73-A9RS-01 8 124369839 124369839 C A ATAD2 Missense_Mutation p.G507V 0.40 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 8 131172165 131172165 C A ASAP1 Missense_Mutation p.G319C 0.17 deleterious(0) probably_damaging(0.996) TCGA-73-A9RS-01 8 139144725 139144725 C G FAM135B 3'UTR 0.44 TCGA-73-A9RS-01 8 143614676 143614676 G A BAI1 Missense_Mutation p.C1140Y 0.33 deleterious(0) possibly_damaging(0.712) TCGA-73-A9RS-01 8 143846021 143846021 C A LYNX1 3'UTR 0.40 TCGA-73-A9RS-01 8 143958259 143958259 C A CYP11B1 Missense_Mutation p.G213V 0.18 deleterious(0.01) probably_damaging(0.934) TCGA-73-A9RS-01 8 143998500 143998500 C A CYP11B2 Missense_Mutation p.G124W 0.48 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 8 145111131 145111131 T C OPLAH Missense_Mutation p.Q672R 0.52 tolerated(0.42) benign(0.005) TCGA-73-A9RS-01 8 15998441 15998441 G T MSR1 Intron 0.56 TCGA-73-A9RS-01 8 1728796 1728796 G C CLN8 3'UTR 0.55 TCGA-73-A9RS-01 8 20036638 20036638 G T SLC18A1 Missense_Mutation p.T161N 0.26 deleterious(0) probably_damaging(0.968) TCGA-73-A9RS-01 8 25899667 25899667 C A EBF2 Missense_Mutation p.G78C 0.26 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 8 26627584 26627584 C G ADRA1A Intron 0.43 TCGA-73-A9RS-01 8 27296601 27296601 G T PTK2B Missense_Mutation p.G566V 0.26 deleterious(0.01) probably_damaging(1) TCGA-73-A9RS-01 8 2820762 2820762 C A CSMD1 Nonsense_Mutation p.E3146* 0.47 TCGA-73-A9RS-01 8 37729369 37729369 T C RAB11FIP1 Missense_Mutation p.D984G 0.33 tolerated_low_confidence(0.35) benign(0.016) TCGA-73-A9RS-01 8 37792605 37792605 T C GOT1L1 Missense_Mutation p.Y353C 0.33 deleterious(0) probably_damaging(0.997) TCGA-73-A9RS-01 8 38831820 38831820 G T HTRA4 Missense_Mutation p.R13L 0.33 tolerated_low_confidence(0.29) benign(0.006) TCGA-73-A9RS-01 8 42040332 42040332 G T PLAT Nonsense_Mutation p.C236* 0.16 TCGA-73-A9RS-01 8 42214904 42214904 A G POLB Missense_Mutation p.R182G 0.21 deleterious(0) probably_damaging(0.998) TCGA-73-A9RS-01 8 49647828 49647828 G T EFCAB1 5'Flank 0.37 TCGA-73-A9RS-01 8 53071605 53071605 C A ST18 Missense_Mutation p.Q553H 0.25 tolerated(0.18) probably_damaging(0.969) TCGA-73-A9RS-01 8 56270437 56270437 G T XKR4 Missense_Mutation p.G336C 0.26 tolerated(0.4) probably_damaging(1) TCGA-73-A9RS-01 8 61192369 61192369 T C CA8 Silent p.R57R 0.27 TCGA-73-A9RS-01 8 65494137 65494137 G T BHLHE22 Nonsense_Mutation p.E264* 0.23 TCGA-73-A9RS-01 8 69351716 69351716 G C C8orf34 Intron 0.38 TCGA-73-A9RS-01 8 73480093 73480093 G T KCNB2 Missense_Mutation p.G42W 0.43 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 8 75156976 75156976 C A JPH1 Missense_Mutation p.V565L 0.35 tolerated(0.39) benign(0.029) TCGA-73-A9RS-01 8 75925224 75925224 G T CRISPLD1 Missense_Mutation p.R159S 0.25 deleterious(0.03) benign(0.226) TCGA-73-A9RS-01 8 77617848 77617848 C T ZFHX4 Missense_Mutation p.P509S 0.25 possibly_damaging(0.803) TCGA-73-A9RS-01 8 77766816 77766816 C A ZFHX4 Silent p.G2553G 0.43 TCGA-73-A9RS-01 8 87242053 87242053 C A SLC7A13 Missense_Mutation p.G152C 0.30 deleterious(0) probably_damaging(0.997) TCGA-73-A9RS-01 8 87588174 87588174 A T CNGB3 Missense_Mutation p.V763E 0.33 tolerated(0.46) benign(0.004) TCGA-73-A9RS-01 8 92007971 92007971 G A TMEM55A Silent p.I236I 0.32 TCGA-73-A9RS-01 8 92998418 92998418 C A RUNX1T1 Missense_Mutation p.G416C 0.28 deleterious(0.04) benign(0.001) TCGA-73-A9RS-01 8 95188861 95188861 G A CDH17 Missense_Mutation p.P111L 0.16 tolerated(0.22) benign(0.104) TCGA-73-A9RS-01 8 95188862 95188862 G T CDH17 Missense_Mutation p.P111T 0.15 tolerated(0.48) benign(0.006) TCGA-73-A9RS-01 8 99149090 99149090 G T POP1 Missense_Mutation p.D424Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 9 103271345 103271345 G T TMEFF1 Missense_Mutation p.C122F 0.50 deleterious(0.02) benign(0.003) TCGA-73-A9RS-01 9 103348372 103348372 G T MURC Missense_Mutation p.G245V 0.60 deleterious(0.03) probably_damaging(1) TCGA-73-A9RS-01 9 106864738 106864738 G T SMC2 Missense_Mutation p.A302S 0.62 tolerated(0.58) benign(0.014) TCGA-73-A9RS-01 9 117104310 117104310 C A AKNA Missense_Mutation p.G1285C 0.50 deleterious(0.01) possibly_damaging(0.847) TCGA-73-A9RS-01 9 122004380 122004380 C A BRINP1 Missense_Mutation p.R175L 0.31 deleterious(0) probably_damaging(0.982) TCGA-73-A9RS-01 9 12698577 12698577 C A TYRP1 Missense_Mutation p.P279T 0.31 tolerated(0.07) benign(0.021) TCGA-73-A9RS-01 9 130116147 130116147 G T GARNL3 Silent p.V522V 0.59 TCGA-73-A9RS-01 9 13122107 13122107 C A MPDZ Missense_Mutation p.W1672C 0.22 deleterious(0) probably_damaging(0.972) TCGA-73-A9RS-01 9 136136720 136136720 C A ABO Splice_Site 0.36 TCGA-73-A9RS-01 9 138440642 138440642 G C OBP2A Missense_Mutation p.M159I 0.56 tolerated(1) benign(0.003) TCGA-73-A9RS-01 9 138670573 138670573 C A KCNT1 Missense_Mutation p.D878E 0.39 tolerated(0.35) benign(0.059) TCGA-73-A9RS-01 9 15729775 15729775 G T CCDC171 Silent p.L676L 0.54 TCGA-73-A9RS-01 9 21971057 21971057 C A CDKN2A Missense_Mutation p.G101W 0.67 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 9 26905890 26905890 G A PLAA Silent p.G669G 0.26 TCGA-73-A9RS-01 9 27949386 27949386 G T LINGO2 Silent p.V428V 0.28 TCGA-73-A9RS-01 9 32542232 32542232 T G TOPORS Missense_Mutation p.Y764S 0.27 deleterious_low_confidence(0.05) unknown(0) TCGA-73-A9RS-01 9 32784958 32784958 C A TMEM215 3'UTR 0.16 TCGA-73-A9RS-01 9 35102256 35102256 C T STOML2 Intron 0.36 TCGA-73-A9RS-01 9 39109245 39109245 C A CNTNAP3 Silent p.L759L 0.28 TCGA-73-A9RS-01 9 39887023 39887023 A T SPATA31A2 Nonsense_Mutation p.R89* 0.67 TCGA-73-A9RS-01 9 4544657 4544657 G T SLC1A1 Missense_Mutation p.R61L 0.34 deleterious(0) probably_damaging(0.925) TCGA-73-A9RS-01 9 5969325 5969325 C T KIAA2026 Nonsense_Mutation p.W302* 0.61 TCGA-73-A9RS-01 9 71628946 71628946 G T PRKACG Silent p.A21A 0.59 TCGA-73-A9RS-01 9 74309437 74309437 C T TMEM2 Silent p.P1228P 0.17 TCGA-73-A9RS-01 9 74810468 74810468 G T GDA Missense_Mutation p.C59F 0.23 tolerated(0.28) benign(0.001) TCGA-73-A9RS-01 9 74810474 74810474 A T GDA Missense_Mutation p.K61M 0.48 tolerated(0.07) benign(0.225) TCGA-73-A9RS-01 9 74860183 74860183 G T GDA Missense_Mutation p.D419Y 0.32 deleterious(0.02) benign(0.293) TCGA-73-A9RS-01 9 79321215 79321215 C A PRUNE2 Missense_Mutation p.G1992V 0.51 tolerated(0.59) benign(0.021) TCGA-73-A9RS-01 9 8499735 8499735 C A PTPRD Missense_Mutation p.R745I 0.20 deleterious(0.03) probably_damaging(0.993) TCGA-73-A9RS-01 9 8518290 8518290 G T PTPRD Nonsense_Mutation p.Y367* 0.77 TCGA-73-A9RS-01 9 96097893 96097893 G T C9orf129 Missense_Mutation p.P43Q 0.65 tolerated_low_confidence(0.08) probably_damaging(0.946) TCGA-73-A9RS-01 X 100881102 100881102 A T ARMCX3 Missense_Mutation p.Q378L 0.38 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-73-A9RS-01 X 101092528 101092528 C T NXF5 Missense_Mutation p.V340M 0.57 deleterious(0.01) possibly_damaging(0.495) TCGA-73-A9RS-01 X 102005230 102005230 T C BHLHB9 Missense_Mutation p.F436S 0.57 tolerated(0.75) benign(0.002) TCGA-73-A9RS-01 X 102755671 102755671 C - RAB40A Frame_Shift_Del p.G5Afs*21 0.39 TCGA-73-A9RS-01 X 107819157 107819157 T A COL4A5 Silent p.T188T 0.54 TCGA-73-A9RS-01 X 110544872 110544872 A G DCX 3'UTR 0.54 TCGA-73-A9RS-01 X 114384436 114384436 C A LRCH2 Missense_Mutation p.S550I 0.71 tolerated(0.27) benign(0.07) TCGA-73-A9RS-01 X 117079477 117079477 G C KLHL13 Missense_Mutation p.L57V 0.62 tolerated(1) benign(0.002) TCGA-73-A9RS-01 X 11793118 11793118 G T MSL3 Missense_Mutation p.D496Y 0.53 deleterious(0.01) probably_damaging(0.983) TCGA-73-A9RS-01 X 118221445 118221445 C G KIAA1210 Missense_Mutation p.G1250R 0.64 deleterious(0.01) probably_damaging(0.976) TCGA-73-A9RS-01 X 118222358 118222358 G T KIAA1210 Silent p.I945I 0.63 TCGA-73-A9RS-01 X 134683618 134683618 G A DDX26B Nonsense_Mutation p.W265* 0.69 TCGA-73-A9RS-01 X 141291376 141291376 C A MAGEC2 Missense_Mutation p.S133I 0.64 tolerated(0.13) benign(0.177) TCGA-73-A9RS-01 X 144904363 144904363 G T SLITRK2 Missense_Mutation p.Q140H 0.68 deleterious(0) probably_damaging(1) TCGA-73-A9RS-01 X 147744066 147744066 G T AFF2 Missense_Mutation p.G273V 0.57 tolerated(0.07) possibly_damaging(0.566) TCGA-73-A9RS-01 X 147967469 147967469 C A AFF2 Missense_Mutation p.P438H 0.58 tolerated(0.14) probably_damaging(1) TCGA-73-A9RS-01 X 152823679 152823679 G A ATP2B3 Missense_Mutation p.S848N 0.59 tolerated(0.05) benign(0.176) TCGA-73-A9RS-01 X 35938011 35938011 A G CXorf22 Missense_Mutation p.D32G 0.27 tolerated(0.14) benign(0.013) TCGA-73-A9RS-01 X 36007618 36007618 G T CXorf22 Missense_Mutation p.G966W 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.895) TCGA-73-A9RS-01 X 40522271 40522271 C A MED14 Missense_Mutation p.G1197V 0.31 deleterious(0) possibly_damaging(0.728) TCGA-73-A9RS-01 X 49021349 49021349 G T MAGIX Missense_Mutation p.R143L 0.77 deleterious(0) probably_damaging(0.926) TCGA-73-A9RS-01 X 50378083 50378083 C G SHROOM4 Silent p.G330G 0.42 TCGA-73-A9RS-01 X 54785061 54785061 C A ITIH6 Silent p.L482L 0.81 TCGA-73-A9RS-01 X 65417665 65417665 G A HEPH Missense_Mutation p.D602N 0.44 deleterious(0) probably_damaging(0.999) TCGA-73-A9RS-01 X 67417029 67417029 G T OPHN1 Missense_Mutation p.P368H 0.62 deleterious(0) probably_damaging(0.996) TCGA-73-A9RS-01 X 77380509 77380509 G C PGK1 Missense_Mutation p.V359L 0.79 tolerated(0.15) benign(0.161) TCGA-73-A9RS-01 X 84560798 84560798 C G POF1B Missense_Mutation p.R479T 0.45 deleterious(0) benign(0.397) TCGA-73-A9RS-01 X 96354768 96354768 T C DIAPH2 Missense_Mutation p.C775R 0.47 deleterious(0) probably_damaging(0.968) TCGA-73-A9RS-01 X 96354769 96354769 G T DIAPH2 Missense_Mutation p.C775F 0.47 deleterious(0) probably_damaging(0.968) TCGA-75-5122-01 10 100177472 100177472 C T HPS1 Missense_Mutation p.R651H 0.08 tolerated(0.08) probably_damaging(1) TCGA-75-5122-01 10 108923918 108923918 C A SORCS1 Missense_Mutation p.G123C 0.19 deleterious(0.01) possibly_damaging(0.871) TCGA-75-5122-01 10 112361598 112361603 CCCCAG - SMC3 In_Frame_Del p.P950_Q951del 0.14 TCGA-75-5122-01 10 125769718 125769718 C A CHST15 Missense_Mutation p.A545S 0.21 tolerated(0.65) benign(0.005) TCGA-75-5122-01 10 131557476 131557476 C A MGMT Silent p.T126T 0.08 TCGA-75-5122-01 10 27537293 27537293 A T RP11-85G18.6 Intron 0.11 TCGA-75-5122-01 11 106647306 106647307 - A GUCY1A2 Frame_Shift_Ins p.E566Gfs*5 0.10 TCGA-75-5122-01 11 113140955 113140955 G T NCAM1 Missense_Mutation p.G775V 0.15 deleterious(0) probably_damaging(1) TCGA-75-5122-01 11 117160510 117160510 G T BACE1 Missense_Mutation p.F426L 0.17 tolerated(0.44) possibly_damaging(0.522) TCGA-75-5122-01 11 120776031 120776031 C A GRIK4 Missense_Mutation p.H435Q 0.05 tolerated(0.27) possibly_damaging(0.825) TCGA-75-5122-01 11 20067055 20067055 C G NAV2 Missense_Mutation p.N1270K 0.10 deleterious(0) probably_damaging(0.995) TCGA-75-5122-01 11 33689585 33689585 A C KIAA1549L Missense_Mutation p.D1812A 0.13 deleterious(0) possibly_damaging(0.871) TCGA-75-5122-01 11 55594985 55594985 C T OR5L2 Silent p.C97C 0.12 TCGA-75-5122-01 11 59949120 59949120 G A MS4A6A Silent p.P55P 0.21 TCGA-75-5122-01 11 9597496 9597496 T G WEE1 Missense_Mutation p.L213R 0.21 tolerated(0.23) probably_damaging(0.999) TCGA-75-5122-01 12 113704105 113704105 C A TPCN1 Missense_Mutation p.L192M 0.15 tolerated(0.21) possibly_damaging(0.612) TCGA-75-5122-01 12 13717037 13717037 C G GRIN2B Missense_Mutation p.K1045N 0.07 deleterious(0) probably_damaging(0.999) TCGA-75-5122-01 12 1940363 1940363 C A LRTM2 Silent p.S110S 0.08 TCGA-75-5122-01 12 22688245 22688245 C A C2CD5 Missense_Mutation p.V42L 0.11 deleterious(0) probably_damaging(0.962) TCGA-75-5122-01 12 57872486 57872486 C A ARHGAP9 Missense_Mutation p.R124M 0.16 tolerated(0.15) benign(0.047) TCGA-75-5122-01 12 57910304 57910304 A G MARS Silent p.K881K 0.10 TCGA-75-5122-01 12 68549203 68549203 G A IFNG Missense_Mutation p.S144L 0.87 tolerated(0.3) benign(0.099) TCGA-75-5122-01 12 69115726 69115726 G A NUP107 Missense_Mutation p.D473N 0.03 tolerated(0.6) benign(0.001) TCGA-75-5122-01 12 69965138 69965138 G A FRS2 Silent p.V112V 0.04 TCGA-75-5122-01 12 7177423 7177423 C T C1S Missense_Mutation p.P512L 0.09 deleterious(0.01) probably_damaging(0.985) TCGA-75-5122-01 12 8211488 8211488 G C C3AR1 Missense_Mutation p.P432A 0.07 deleterious(0) probably_damaging(1) TCGA-75-5122-01 13 113474218 113474218 G A ATP11A Missense_Mutation p.V227M 0.07 tolerated(0.16) benign(0.212) TCGA-75-5122-01 14 106829888 106829888 C A IGHV4-34 Silent p.L25L 0.15 TCGA-75-5122-01 14 74345977 74345977 G T PTGR2 Missense_Mutation p.G233V 0.12 deleterious(0) probably_damaging(1) TCGA-75-5122-01 15 25334999 25334999 G T SNORD116-23 5'Flank 0.16 TCGA-75-5122-01 15 25417788 25417788 A C SNORD115-2 RNA 0.16 TCGA-75-5122-01 15 48063639 48063639 G T SEMA6D Missense_Mutation p.R960I 0.12 tolerated(0.08) benign(0.439) TCGA-75-5122-01 15 57730535 57730535 C A CGNL1 Missense_Mutation p.P113Q 0.09 deleterious(0.03) benign(0.193) TCGA-75-5122-01 15 89382197 89382197 C T ACAN Missense_Mutation p.S125F 0.04 deleterious(0.01) unknown(0) TCGA-75-5122-01 16 1536062 1536062 C G PTX4 Missense_Mutation p.V434L 0.31 deleterious(0) possibly_damaging(0.843) TCGA-75-5122-01 16 15797975 15797975 C T MYH11 Missense_Mutation p.G1938E 0.11 benign(0.023) TCGA-75-5122-01 16 29830979 29830979 G A PAGR1 Silent p.R223R 0.14 TCGA-75-5122-01 16 46943706 46943706 C T GPT2 Silent p.I229I 0.09 TCGA-75-5122-01 16 50059598 50059598 C T CNEP1R1 Missense_Mutation p.S21F 0.12 tolerated(0.11) benign(0) TCGA-75-5122-01 16 54319192 54319192 C T IRX3 Missense_Mutation p.E201K 0.12 tolerated(0.06) benign(0.381) TCGA-75-5122-01 16 716508 716508 C G WDR90 Missense_Mutation p.D1598E 0.12 deleterious(0) probably_damaging(0.931) TCGA-75-5122-01 17 3802231 3802231 G A P2RX1 Silent p.G321G 0.13 TCGA-75-5122-01 17 5241393 5241393 C T RABEP1 Missense_Mutation p.T203I 0.14 tolerated(0.16) benign(0.004) TCGA-75-5122-01 17 7606058 7606058 C T WRAP53 Intron 0.15 TCGA-75-5122-01 18 40850335 40850335 C G SYT4 Missense_Mutation p.A417P 0.07 deleterious(0.02) probably_damaging(0.998) TCGA-75-5122-01 18 42281721 42281721 G T SETBP1 Missense_Mutation p.G137V 0.05 tolerated(0.08) probably_damaging(1) TCGA-75-5122-01 18 61262278 61262278 G T SERPINB13 Missense_Mutation p.V211L 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-75-5122-01 19 13051264 13051264 G A CALR Missense_Mutation p.E234K 0.10 deleterious(0.02) possibly_damaging(0.872) TCGA-75-5122-01 19 14569090 14569090 T A PKN1 Missense_Mutation p.L447Q 0.06 deleterious(0) probably_damaging(0.998) TCGA-75-5122-01 19 36496333 36496333 C A SYNE4 Missense_Mutation p.D292Y 0.08 deleterious_low_confidence(0.05) benign(0.002) TCGA-75-5122-01 19 39090623 39090623 G C MAP4K1 Silent p.L537L 0.04 TCGA-75-5122-01 19 40745995 40745995 G C AKT2 Missense_Mutation p.T199S 0.10 tolerated(0.16) benign(0.366) TCGA-75-5122-01 19 43359837 43359837 C T PSG10P 5'Flank 0.18 TCGA-75-5122-01 19 55591906 55591906 C T EPS8L1 Intron 0.09 TCGA-75-5122-01 1 115266602 115266602 G C CSDE1 Missense_Mutation p.A638G 0.06 tolerated(0.16) benign(0.008) TCGA-75-5122-01 1 15988127 15988127 G T RSC1A1 Missense_Mutation p.Q588H 0.23 deleterious(0.04) possibly_damaging(0.785) TCGA-75-5122-01 1 160093741 160093741 G C ATP1A2 Silent p.L130L 0.15 TCGA-75-5122-01 1 160604481 160604481 T C SLAMF1 Missense_Mutation p.I208V 0.12 tolerated(0.77) benign(0.001) TCGA-75-5122-01 1 16264106 16264106 C A SPEN Missense_Mutation p.S3492Y 0.09 possibly_damaging(0.515) TCGA-75-5122-01 1 19499434 19499434 G - UBR4 Frame_Shift_Del p.H1149Ifs*136 0.15 TCGA-75-5122-01 1 238050095 238050095 G A ZP4 Missense_Mutation p.S272F 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-75-5122-01 1 247597434 247597434 G C NLRP3 Missense_Mutation p.C786S 0.16 tolerated(0.07) benign(0.223) TCGA-75-5122-01 1 27124066 27124066 T C PIGV Missense_Mutation p.F405L 0.06 tolerated(0.11) benign(0.239) TCGA-75-5122-01 1 27224092 27224092 T A GPATCH3 Missense_Mutation p.R192S 0.16 tolerated(0.09) benign(0.001) TCGA-75-5122-01 1 3701699 3701699 G T LRRC47 Silent p.A382A 0.10 TCGA-75-5122-01 1 39798795 39798795 G C MACF1 Intron 0.07 TCGA-75-5122-01 1 39799732 39799732 G C MACF1 Intron 0.08 TCGA-75-5122-01 1 6324699 6324699 C T ACOT7 Silent p.Q367Q 0.09 TCGA-75-5122-01 1 75199007 75199007 G T TYW3 Missense_Mutation p.D27Y 0.19 deleterious(0) probably_damaging(1) TCGA-75-5122-01 1 75596381 75596381 C T LHX8 5'UTR 0.09 TCGA-75-5122-01 20 10030301 10030301 G T ANKEF1 Missense_Mutation p.V362L 0.07 tolerated(0.07) benign(0.002) TCGA-75-5122-01 20 36856552 36856552 G A KIAA1755 Silent p.T654T 0.15 TCGA-75-5122-01 20 36948635 36948635 C A BPI Missense_Mutation p.P243T 0.14 deleterious(0.01) possibly_damaging(0.685) TCGA-75-5122-01 20 37570740 37570740 G T FAM83D Missense_Mutation p.D238Y 0.13 deleterious(0) probably_damaging(0.917) TCGA-75-5122-01 20 43566779 43566779 G C PABPC1L Missense_Mutation p.D575H 0.11 deleterious(0) probably_damaging(1) TCGA-75-5122-01 20 57242593 57242593 A G STX16 Silent p.P64P 0.08 TCGA-75-5122-01 21 10934993 10934993 A T TPTE Missense_Mutation p.V267D 0.04 deleterious(0.02) probably_damaging(0.957) TCGA-75-5122-01 21 35208915 35208915 G C ITSN1 Missense_Mutation p.D1214H 0.10 deleterious(0) benign(0.076) TCGA-75-5122-01 22 22730817 22730817 G A IGLV5-45 Silent p.G104G 0.14 TCGA-75-5122-01 22 34157357 34157357 C T LARGE Splice_Site p.X36_splice 0.07 TCGA-75-5122-01 22 37098677 37098677 G T CACNG2 5'UTR 0.12 TCGA-75-5122-01 22 42608568 42608568 A T TCF20 Missense_Mutation p.V915E 0.06 probably_damaging(0.917) TCGA-75-5122-01 2 105924096 105924096 G A TGFBRAP1 Silent p.F221F 0.06 TCGA-75-5122-01 2 155711659 155711659 C G KCNJ3 Nonsense_Mutation p.S447* 0.07 TCGA-75-5122-01 2 169717326 169717326 A G NOSTRIN Missense_Mutation p.K458E 0.08 tolerated(0.12) benign(0.097) TCGA-75-5122-01 2 182359493 182359495 ACA - ITGA4 In_Frame_Del p.Q432del 0.10 TCGA-75-5122-01 2 198051747 198051747 C A ANKRD44 Silent p.L37L 0.06 TCGA-75-5122-01 2 201407368 201407368 A G SGOL2 Missense_Mutation p.M152V 0.14 tolerated(0.6) benign(0.007) TCGA-75-5122-01 2 220337808 220337808 G A SPEG Silent p.L1379L 0.26 TCGA-75-5122-01 2 27505721 27505721 C T TRIM54 Missense_Mutation p.P41L 0.07 deleterious(0) probably_damaging(0.961) TCGA-75-5122-01 2 51255078 51255078 C T NRXN1 Missense_Mutation p.G112S 0.10 tolerated(0.43) benign(0.005) TCGA-75-5122-01 2 70015217 70015217 C T ANXA4 Missense_Mutation p.S14L 0.07 tolerated(0.08) benign(0.002) TCGA-75-5122-01 2 89416939 89416939 G A IGKV1-17 Missense_Mutation p.S82L 0.09 deleterious(0.04) possibly_damaging(0.718) TCGA-75-5122-01 3 109023457 109023457 C T DPPA2 Missense_Mutation p.R240H 0.16 tolerated(0.13) benign(0.001) TCGA-75-5122-01 3 124738228 124738228 G A HEG1 Missense_Mutation p.S489L 0.09 tolerated(0.11) benign(0.021) TCGA-75-5122-01 3 124738360 124738360 G A HEG1 Missense_Mutation p.S445L 0.06 deleterious(0.04) possibly_damaging(0.593) TCGA-75-5122-01 3 132319791 132319791 T A ACKR4 Missense_Mutation p.C184S 0.29 deleterious(0) probably_damaging(1) TCGA-75-5122-01 3 184049592 184049592 T A EIF4G1 Missense_Mutation p.I1498N 0.08 deleterious(0) probably_damaging(0.923) TCGA-75-5122-01 3 35785425 35785425 G T ARPP21 Missense_Mutation p.S668I 0.08 deleterious(0) benign(0.252) TCGA-75-5122-01 3 52486123 52486123 G A TNNC1 Silent p.D67D 0.16 TCGA-75-5122-01 3 88104803 88104803 C A CGGBP1 Silent p.V108V 0.15 TCGA-75-5122-01 4 141888915 141888915 G T RNF150 Missense_Mutation p.N199K 0.14 tolerated(0.11) probably_damaging(0.998) TCGA-75-5122-01 4 145039892 145039892 T C GYPA Silent p.Q82Q 0.17 TCGA-75-5122-01 4 158233867 158233867 C A GRIA2 Missense_Mutation p.A169D 0.20 tolerated(0.15) possibly_damaging(0.825) TCGA-75-5122-01 4 164394375 164394375 G A TKTL2 Missense_Mutation p.A171V 0.24 deleterious(0) probably_damaging(0.984) TCGA-75-5122-01 4 167020587 167020587 G C TLL1 Missense_Mutation p.E939Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-75-5122-01 4 187539532 187539532 G C FAT1 Missense_Mutation p.S2736R 0.06 possibly_damaging(0.857) TCGA-75-5122-01 4 189063534 189063534 G A TRIML1 Silent p.L211L 0.10 TCGA-75-5122-01 4 39871068 39871068 C G PDS5A Missense_Mutation p.K817N 0.07 tolerated(0.27) possibly_damaging(0.529) TCGA-75-5122-01 4 4864799 4864799 G A MSX1 Missense_Mutation p.A281T 0.08 deleterious(0.04) benign(0.209) TCGA-75-5122-01 4 57190403 57190403 A T KIAA1211 Missense_Mutation p.K1171M 0.18 deleterious(0) possibly_damaging(0.891) TCGA-75-5122-01 4 70066243 70066243 G T UGT2B11 Missense_Mutation p.A502E 0.08 deleterious(0) probably_damaging(0.936) TCGA-75-5122-01 4 70079941 70079941 C T UGT2B11 Missense_Mutation p.R167Q 0.12 deleterious(0.02) benign(0.002) TCGA-75-5122-01 4 79366688 79366688 G C FRAS1 Missense_Mutation p.G1893A 0.09 benign(0.046) TCGA-75-5122-01 4 88767657 88767657 G A MEPE 3'UTR 0.10 TCGA-75-5122-01 5 101726745 101726745 C A SLCO6A1 Missense_Mutation p.V607L 0.19 tolerated(0.11) possibly_damaging(0.677) TCGA-75-5122-01 5 102494220 102494220 C G PPIP5K2 Silent p.L560L 0.12 TCGA-75-5122-01 5 127728883 127728883 G A FBN2 Silent p.G470G 0.07 TCGA-75-5122-01 5 128983511 128983511 C T ADAMTS19 Silent p.A636A 0.06 TCGA-75-5122-01 5 140257174 140257174 C T PCDHA12 Missense_Mutation p.A706V 0.14 deleterious_low_confidence(0.04) benign(0.059) TCGA-75-5122-01 5 140432184 140432184 C A PCDHB1 Silent p.R377R 0.06 TCGA-75-5122-01 5 140720634 140720634 C T PCDHGA2 Missense_Mutation p.A699V 0.11 tolerated_low_confidence(0.41) benign(0.012) TCGA-75-5122-01 5 140788222 140788222 A T PCDHGB6 Silent p.R151R 0.18 TCGA-75-5122-01 5 167674048 167674048 G T TENM2 Missense_Mutation p.S2035I 0.10 deleterious(0) probably_damaging(0.917) TCGA-75-5122-01 5 176825194 176825194 G A SLC34A1 Silent p.P609P 0.09 TCGA-75-5122-01 5 19473694 19473694 C T CDH18 Missense_Mutation p.D672N 0.08 deleterious(0) possibly_damaging(0.795) TCGA-75-5122-01 5 38885462 38885462 G A OSMR Missense_Mutation p.E239K 0.09 deleterious(0) probably_damaging(0.977) TCGA-75-5122-01 5 40979944 40979944 C A C7 Missense_Mutation p.D761E 0.06 tolerated(1) benign(0) TCGA-75-5122-01 5 50090157 50090157 C T PARP8 Missense_Mutation p.T285I 0.11 tolerated_low_confidence(0.06) benign(0.027) TCGA-75-5122-01 5 5237160 5237160 G A ADAMTS16 Missense_Mutation p.G701E 0.04 deleterious(0) probably_damaging(0.998) TCGA-75-5122-01 5 79030763 79030763 C A CMYA5 Missense_Mutation p.Q2059K 0.15 benign(0.05) TCGA-75-5122-01 6 10959066 10959066 C A SYCP2L Missense_Mutation p.P738Q 0.18 deleterious(0) probably_damaging(0.958) TCGA-75-5122-01 6 122773169 122773169 A G SERINC1 Missense_Mutation p.L208P 0.16 deleterious(0) probably_damaging(0.993) TCGA-75-5122-01 6 126199463 126199463 A G NCOA7 Missense_Mutation p.N136D 0.15 deleterious(0) probably_damaging(0.999) TCGA-75-5122-01 6 136597097 136597097 T G BCLAF1 Silent p.R522R 0.09 TCGA-75-5122-01 6 1611205 1611205 G A FOXC1 Silent p.K175K 0.18 TCGA-75-5122-01 6 43592282 43592282 G A GTPBP2 Silent p.A355A 0.20 TCGA-75-5122-01 6 51908488 51908488 C A PKHD1 Missense_Mutation p.G919V 0.18 deleterious(0) probably_damaging(0.992) TCGA-75-5122-01 6 90365610 90365610 C G MDN1 Silent p.L5121L 0.09 TCGA-75-5122-01 6 90573714 90573714 C T CASP8AP2 RNA 0.08 TCGA-75-5122-01 6 97247416 97247416 T A GPR63 Silent p.T64T 0.16 TCGA-75-5122-01 7 100841637 100841637 G A MOGAT3 Missense_Mutation p.P168L 0.10 deleterious(0) probably_damaging(0.979) TCGA-75-5122-01 7 116412045 116412045 T C MET Splice_Site p.X1028_splice 0.20 TCGA-75-5122-01 7 134222969 134222969 G C AKR1B10 Missense_Mutation p.Q255H 0.23 deleterious(0) probably_damaging(0.942) TCGA-75-5122-01 7 27147768 27147768 G A HOXA3 Silent p.F366F 0.21 TCGA-75-5122-01 7 47882626 47882626 C T PKD1L1 Silent p.P1793P 0.17 TCGA-75-5122-01 7 48547627 48547628 AA T ABCA13 Frame_Shift_Del p.N4503Tfs*25 0.15 TCGA-75-5122-01 7 50070836 50070836 A G ZPBP Silent p.Y186Y 0.12 TCGA-75-5122-01 7 50663155 50663155 A C GRB10 Missense_Mutation p.I539M 0.21 deleterious(0) probably_damaging(0.924) TCGA-75-5122-01 7 893192 893192 G - SUN1 Frame_Shift_Del p.E401Kfs*45 0.17 TCGA-75-5122-01 8 10755669 10755669 C T XKR6 Silent p.P573P 0.08 TCGA-75-5122-01 8 124195477 124195477 C G FAM83A Silent p.P127P 0.11 TCGA-75-5122-01 8 26501589 26501589 C T DPYSL2 Silent p.V364V 0.14 TCGA-75-5122-01 8 65509420 65509420 T A CYP7B1 Nonsense_Mutation p.K434* 0.09 TCGA-75-5122-01 8 88885615 88885615 G T DCAF4L2 Missense_Mutation p.H195Q 0.04 tolerated(1) benign(0) TCGA-75-5122-01 9 101765772 101765772 C A COL15A1 Missense_Mutation p.P368H 0.19 deleterious_low_confidence(0) benign(0.293) TCGA-75-5122-01 9 104314736 104314736 G A RNF20 Silent p.A534A 0.09 TCGA-75-5122-01 9 127618838 127618838 G A WDR38 Missense_Mutation p.A193T 0.35 deleterious(0.01) benign(0.049) TCGA-75-5122-01 9 130488670 130488670 C G TTC16 Missense_Mutation p.P471R 0.05 deleterious(0) probably_damaging(0.992) TCGA-75-5122-01 9 137646164 137646164 G T COL5A1 Nonsense_Mutation p.G607* 0.17 TCGA-75-5122-01 9 139110585 139110585 G C QSOX2 Missense_Mutation p.H342Q 0.11 deleterious(0.04) possibly_damaging(0.835) TCGA-75-5122-01 9 20933099 20933099 A T FOCAD Missense_Mutation p.Y1135F 0.12 deleterious(0.01) benign(0.179) TCGA-75-5122-01 9 20933101 20933101 A T FOCAD Missense_Mutation p.N1136Y 0.11 deleterious(0) possibly_damaging(0.534) TCGA-75-5122-01 9 3879429 3879429 C T GLIS3 Silent p.E765E 0.06 TCGA-75-5122-01 9 40702809 40702809 G A SPATA31A3 Missense_Mutation p.D156N 0.14 tolerated(0.58) possibly_damaging(0.908) TCGA-75-5122-01 9 86917148 86917148 C T SLC28A3 Missense_Mutation p.R164K 0.19 tolerated(0.44) benign(0.003) TCGA-75-5122-01 X 107975900 107975900 G T IRS4 Silent p.P1225P 0.32 TCGA-75-5122-01 X 111019956 111019956 G C TRPC5 Missense_Mutation p.S836C 0.20 deleterious_low_confidence(0.02) benign(0.339) TCGA-75-5122-01 X 144337426 144337426 C A SPANXN1 3'UTR 0.41 TCGA-75-5122-01 X 3002444 3002444 C G ARSF Silent p.L189L 0.07 TCGA-75-5122-01 X 37935840 37935840 G T SYTL5 Missense_Mutation p.R192I 0.30 deleterious(0.01) possibly_damaging(0.66) TCGA-75-5122-01 X 53432771 53432771 C T SMC1A Missense_Mutation p.D555N 0.18 tolerated(0.12) benign(0.166) TCGA-75-5122-01 X 90690801 90690801 C A PABPC5 Silent p.A75A 0.33 TCGA-75-5125-01 10 103339273 103339273 A G POLL Silent p.T555T 0.20 TCGA-75-5125-01 10 111872541 111872541 C T ADD3 Missense_Mutation p.R68W 0.19 deleterious(0.02) probably_damaging(0.968) TCGA-75-5125-01 10 15714724 15714724 G C ITGA8 Missense_Mutation p.A234G 0.17 tolerated(0.15) possibly_damaging(0.86) TCGA-75-5125-01 10 38121742 38121742 C A ZNF248 Nonsense_Mutation p.E181* 0.20 TCGA-75-5125-01 10 7751133 7751133 C T ITIH2 Missense_Mutation p.A114V 0.15 deleterious(0.01) probably_damaging(1) TCGA-75-5125-01 10 92680017 92680017 A G ANKRD1 Missense_Mutation p.L39S 0.40 tolerated(0.22) benign(0.035) TCGA-75-5125-01 10 96745844 96745844 C T CYP2C9 Missense_Mutation p.P402S 0.37 tolerated(0.07) benign(0.323) TCGA-75-5125-01 11 113076267 113076267 G A NCAM1 Silent p.A182A 0.22 TCGA-75-5125-01 11 113650996 113650996 G T CLDN25 Missense_Mutation p.W160L 0.18 deleterious(0) probably_damaging(0.998) TCGA-75-5125-01 11 118925362 118925362 G C HYOU1 Missense_Mutation p.I174M 0.10 deleterious(0) probably_damaging(0.961) TCGA-75-5125-01 11 119031707 119031707 T A ABCG4 Missense_Mutation p.V611E 0.21 deleterious(0) possibly_damaging(0.786) TCGA-75-5125-01 11 121038838 121038838 A G TECTA Missense_Mutation p.R1888G 0.25 deleterious(0) probably_damaging(0.993) TCGA-75-5125-01 11 1268963 1268963 G C MUC5B Missense_Mutation p.R3618P 0.38 probably_damaging(0.998) TCGA-75-5125-01 11 134022749 134022749 C A NCAPD3 3'UTR 0.23 TCGA-75-5125-01 11 134062726 134062726 C A NCAPD3 Missense_Mutation p.V635L 0.23 deleterious(0) possibly_damaging(0.682) TCGA-75-5125-01 11 50003538 50003538 C A OR4C12 Missense_Mutation p.C167F 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-75-5125-01 11 50003539 50003539 A G OR4C12 Missense_Mutation p.C167R 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-75-5125-01 11 55371130 55371130 A T OR4C11 Silent p.S240S 0.47 TCGA-75-5125-01 11 56510970 56510970 G C OR9G4 Silent p.R106R 0.27 TCGA-75-5125-01 11 5862769 5862769 A T OR52E6 Missense_Mutation p.M120K 0.34 deleterious(0) benign(0.332) TCGA-75-5125-01 11 60073663 60073663 A T MS4A4A Missense_Mutation p.T213S 0.37 tolerated(0.22) benign(0.002) TCGA-75-5125-01 11 64536756 64536756 G A SF1 Missense_Mutation p.R365W 0.31 deleterious(0.02) possibly_damaging(0.48) TCGA-75-5125-01 11 67049199 67049199 G C ADRBK1 Missense_Mutation p.G276R 0.14 deleterious(0) probably_damaging(1) TCGA-75-5125-01 11 67049200 67049200 G A ADRBK1 Splice_Site p.X276_splice 0.14 TCGA-75-5125-01 12 109678885 109678885 C T ACACB Silent p.I1607I 0.23 TCGA-75-5125-01 12 112843030 112843034 AGAAC - RPL6 Frame_Shift_Del p.F288N 0.11 TCGA-75-5125-01 12 11508473 11508473 C A PRB1 Silent p.L5L 0.12 TCGA-75-5125-01 12 120142201 120142201 G A CIT Silent p.Y1757Y 0.12 TCGA-75-5125-01 12 132471165 132471165 G C EP400 Missense_Mutation p.G679A 0.32 unknown(0) TCGA-75-5125-01 12 133324804 133324804 C T ANKLE2 Missense_Mutation p.E321K 0.16 deleterious(0) possibly_damaging(0.713) TCGA-75-5125-01 12 18524165 18524165 T A PIK3C2G Silent p.T559T 0.19 TCGA-75-5125-01 12 22697143 22697143 G A C2CD5 Intron 0.22 TCGA-75-5125-01 12 29673649 29673649 C T TMTC1 Missense_Mutation p.R597Q 0.06 tolerated(0.22) benign(0.187) TCGA-75-5125-01 12 53450824 53450824 C T TENC1 Silent p.T273T 0.20 TCGA-75-5125-01 12 54367216 54367216 C G HOXC11 Missense_Mutation p.S64W 0.05 deleterious(0) probably_damaging(0.999) TCGA-75-5125-01 12 57389032 57389032 G A GPR182 Silent p.E13E 0.33 TCGA-75-5125-01 12 58022666 58022666 G A B4GALNT1 Silent p.L278L 0.17 TCGA-75-5125-01 12 6131160 6131160 C T VWF Missense_Mutation p.E1194K 0.10 tolerated(0.17) benign(0.021) TCGA-75-5125-01 12 64472782 64472782 G T SRGAP1 Missense_Mutation p.Q403H 0.22 tolerated(0.21) benign(0.003) TCGA-75-5125-01 12 65564184 65564184 G A LEMD3 Missense_Mutation p.A270T 0.27 tolerated_low_confidence(0.08) benign(0.074) TCGA-75-5125-01 12 6690314 6690314 G A CHD4 Missense_Mutation p.S1602L 0.31 tolerated(0.16) benign(0.01) TCGA-75-5125-01 12 6690315 6690315 A G CHD4 Missense_Mutation p.S1602P 0.30 tolerated(0.32) benign(0) TCGA-75-5125-01 12 81110975 81110975 G T MYF5 Nonsense_Mutation p.E45* 0.28 TCGA-75-5125-01 13 101756965 101756965 G T NALCN Silent p.V891V 0.32 TCGA-75-5125-01 14 23511887 23511887 C A PSMB11 Nonsense_Mutation p.C151* 0.14 TCGA-75-5125-01 14 45653004 45653004 G C FANCM Missense_Mutation p.E1472Q 0.17 tolerated(0.14) possibly_damaging(0.611) TCGA-75-5125-01 14 74035914 74035914 G A ACOT2 5'UTR 0.16 TCGA-75-5125-01 14 75537608 75537608 C G ZC2HC1C Nonsense_Mutation p.S111* 0.09 TCGA-75-5125-01 14 75538401 75538401 C T ZC2HC1C Silent p.D375D 0.08 TCGA-75-5125-01 14 86088908 86088908 C G FLRT2 Silent p.V350V 0.17 TCGA-75-5125-01 15 22369229 22369229 T C OR4M2 Silent p.Y218Y 0.08 TCGA-75-5125-01 15 27184461 27184461 C A GABRA5 Intron 0.20 TCGA-75-5125-01 15 28377245 28377245 C T HERC2 Splice_Site p.X4190_splice 0.31 TCGA-75-5125-01 15 35747012 35747012 C T DPH6 Missense_Mutation p.E108K 0.15 tolerated(0.06) benign(0.016) TCGA-75-5125-01 15 48058843 48058843 C T SEMA6D Silent p.F559F 0.24 TCGA-75-5125-01 15 63433834 63433834 G C LACTB Missense_Mutation p.A492P 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-75-5125-01 15 65308840 65308840 A G MTFMT Silent p.S249S 0.12 TCGA-75-5125-01 15 88423518 88423518 G T NTRK3 Missense_Mutation p.Q773K 0.16 deleterious(0.01) probably_damaging(0.911) TCGA-75-5125-01 15 94983439 94983439 A G MCTP2 Missense_Mutation p.Y707C 0.12 deleterious(0) probably_damaging(0.972) TCGA-75-5125-01 16 20448451 20448451 T A ACSM5 Missense_Mutation p.D462E 0.23 tolerated(0.33) benign(0.084) TCGA-75-5125-01 16 240028 240028 G A LUC7L Missense_Mutation p.R305C 0.23 deleterious_low_confidence(0) unknown(0) TCGA-75-5125-01 16 24828156 24828156 A G TNRC6A Silent p.P1617P 0.23 TCGA-75-5125-01 16 3108181 3108181 G A MMP25 Splice_Site p.X336_splice 0.23 TCGA-75-5125-01 16 3740882 3740882 C T TRAP1 Missense_Mutation p.E65K 0.07 tolerated(0.09) benign(0.009) TCGA-75-5125-01 16 70366912 70366912 C A DDX19B Missense_Mutation p.L410I 0.11 tolerated(0.06) possibly_damaging(0.778) TCGA-75-5125-01 17 32959769 32959769 G A TMEM132E Missense_Mutation p.R420Q 0.16 deleterious(0.03) benign(0.441) TCGA-75-5125-01 17 42226180 42226180 C T C17orf53 Missense_Mutation p.R337W 0.05 deleterious(0.05) benign(0.004) TCGA-75-5125-01 17 56356421 56356421 C G MPO Missense_Mutation p.G278A 0.24 tolerated(0.06) benign(0.082) TCGA-75-5125-01 17 7578542 7578542 G A TP53 Missense_Mutation p.L130F 0.23 deleterious(0) probably_damaging(1) TCGA-75-5125-01 17 79803440 79803440 C G P4HB Missense_Mutation p.R452S 0.18 tolerated(0.12) benign(0.002) TCGA-75-5125-01 18 2616504 2616504 G A NDC80 Silent p.S620S 0.26 TCGA-75-5125-01 18 2922166 2922166 G T LPIN2 Missense_Mutation p.R736S 0.35 deleterious(0) probably_damaging(0.991) TCGA-75-5125-01 18 42643042 42643042 A T SETBP1 Splice_Site p.X1391_splice 0.26 TCGA-75-5125-01 18 61002580 61002580 G C KDSR Missense_Mutation p.F263L 0.13 deleterious(0) probably_damaging(0.999) TCGA-75-5125-01 19 21366070 21366070 G T ZNF431 Missense_Mutation p.G322C 0.18 deleterious(0.02) probably_damaging(1) TCGA-75-5125-01 19 21366071 21366071 G T ZNF431 Missense_Mutation p.G322V 0.19 deleterious(0.02) probably_damaging(1) TCGA-75-5125-01 19 31048101 31048102 CT A ZNF536 3'UTR 0.19 TCGA-75-5125-01 19 41281418 41281418 C T MIA 5'UTR 0.26 TCGA-75-5125-01 19 44160780 44160780 G A PLAUR Missense_Mutation p.T108I 0.21 tolerated(0.23) possibly_damaging(0.874) TCGA-75-5125-01 19 4557219 4557219 C T SEMA6B Missense_Mutation p.V88I 0.43 tolerated(0.15) benign(0.421) TCGA-75-5125-01 19 50140165 50140165 T A RRAS Missense_Mutation p.Q87L 0.36 deleterious(0) possibly_damaging(0.789) TCGA-75-5125-01 19 50204776 50204776 T A CPT1C Missense_Mutation p.I193N 0.09 deleterious(0) benign(0.373) TCGA-75-5125-01 19 51890513 51890513 G T LIM2 Missense_Mutation p.P62H 0.23 tolerated_low_confidence(0.12) benign(0.187) TCGA-75-5125-01 19 54234273 54234273 C A MIR518A1 RNA 0.18 TCGA-75-5125-01 19 54647826 54647826 G T CNOT3 Missense_Mutation p.D115Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-75-5125-01 19 55146165 55146165 C A LILRB1 Silent p.L479L 0.14 TCGA-75-5125-01 19 56244284 56244284 A T NLRP9 Missense_Mutation p.S305T 0.27 tolerated(0.29) benign(0.307) TCGA-75-5125-01 19 57037372 57037372 C G ZNF471 3'UTR 0.43 TCGA-75-5125-01 19 57175150 57175150 G T ZNF835 Missense_Mutation p.P473T 0.20 deleterious(0) probably_damaging(0.987) TCGA-75-5125-01 19 8971681 8971681 A T MUC16 Missense_Mutation p.V14304E 0.20 possibly_damaging(0.802) TCGA-75-5125-01 1 150459923 150459923 G T TARS2 5'UTR 0.10 TCGA-75-5125-01 1 156238164 156238164 G C SMG5 Silent p.L252L 0.04 TCGA-75-5125-01 1 156810666 156810666 C T INSRR Silent p.%3D 0.23 TCGA-75-5125-01 1 158326239 158326239 G T CD1E Intron 0.20 TCGA-75-5125-01 1 16632321 16632321 G C FBXO42 Missense_Mutation p.P115R 0.08 deleterious(0.04) benign(0.368) TCGA-75-5125-01 1 201046189 201046190 - G CACNA1S Frame_Shift_Ins p.L563Afs*24 0.12 TCGA-75-5125-01 1 203465262 203465262 T C OPTC Silent p.V43V 0.17 TCGA-75-5125-01 1 205496951 205496951 C T CDK18 Silent p.L283L 0.09 TCGA-75-5125-01 1 209796388 209796388 G A LAMB3 Missense_Mutation p.A832V 0.15 tolerated(0.09) probably_damaging(0.978) TCGA-75-5125-01 1 236894581 236894581 C A ACTN2 Missense_Mutation p.H222N 0.21 tolerated(0.19) benign(0.428) TCGA-75-5125-01 1 24112241 24112241 C G PITHD1 Missense_Mutation p.L133V 0.11 tolerated(0.54) benign(0.021) TCGA-75-5125-01 1 24125393 24125393 G C GALE Missense_Mutation p.F35L 0.28 tolerated(1) benign(0.027) TCGA-75-5125-01 1 33116092 33116092 C G ZBTB8OS Missense_Mutation p.L25F 0.05 deleterious(0.03) possibly_damaging(0.86) TCGA-75-5125-01 1 39877402 39877402 C G KIAA0754 Missense_Mutation p.Q353E 0.05 benign(0.001) TCGA-75-5125-01 1 45241248 45241248 C G RPS8 5'UTR 0.17 TCGA-75-5125-01 1 74834891 74834891 G T FPGT-TNNI3K Missense_Mutation p.G586V 0.14 deleterious(0) probably_damaging(1) TCGA-75-5125-01 1 85561661 85561661 G A WDR63 Silent p.P407P 0.08 TCGA-75-5125-01 1 89890089 89890089 G A GBP1P1 Intron 0.10 TCGA-75-5125-01 1 95709848 95709848 A G RWDD3 Missense_Mutation p.H56R 0.08 tolerated(0.09) benign(0.059) TCGA-75-5125-01 20 12989965 12989970 ACAAGA - SPTLC3 In_Frame_Del p.H17_K19delinsQ 0.11 TCGA-75-5125-01 20 31600625 31600625 G T BPIFB2 Missense_Mutation p.V74F 0.09 deleterious(0.01) probably_damaging(0.938) TCGA-75-5125-01 20 45017842 45017843 CT G ELMO2 Frame_Shift_Del p.Q87Pfs*2 0.20 TCGA-75-5125-01 20 56089731 56089731 T C CTCFL Missense_Mutation p.H416R 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-75-5125-01 20 57767422 57767422 G T ZNF831 Missense_Mutation p.D450Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-75-5125-01 20 62164021 62164021 C T PTK6 Silent p.Q230Q 0.09 TCGA-75-5125-01 20 9498855 9498855 C T LAMP5 Missense_Mutation p.S215L 0.11 deleterious(0.01) possibly_damaging(0.686) TCGA-75-5125-01 21 34897065 34897065 T C GART Intron 0.28 TCGA-75-5125-01 21 34926907 34926907 T C SON Silent p.Y1790Y 0.10 TCGA-75-5125-01 22 16449606 16449606 C A OR11H1 Missense_Mutation p.D67Y 0.15 deleterious(0) probably_damaging(0.98) TCGA-75-5125-01 22 25625530 25625530 G C CRYBB2 Missense_Mutation p.R145P 0.23 deleterious(0.01) possibly_damaging(0.861) TCGA-75-5125-01 22 25625531 25625531 G T CRYBB2 Silent p.R145R 0.23 TCGA-75-5125-01 22 42042935 42042935 C G XRCC6 Missense_Mutation p.S270C 0.11 tolerated(0.11) benign(0.413) TCGA-75-5125-01 2 131520209 131520209 G A AMER3 Silent p.G188G 0.20 TCGA-75-5125-01 2 132021364 132021364 G T POTEE Missense_Mutation p.W779L 0.29 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-75-5125-01 2 141242964 141242964 C T LRP1B Missense_Mutation p.V3125I 0.05 benign(0.103) TCGA-75-5125-01 2 14774863 14774863 G A FAM84A Missense_Mutation p.V254I 0.40 tolerated(0.17) benign(0.025) TCGA-75-5125-01 2 168101882 168101882 G A XIRP2 Missense_Mutation p.R1327Q 0.09 benign(0.022) TCGA-75-5125-01 2 173338872 173338872 G A ITGA6 Missense_Mutation p.V289M 0.06 deleterious(0) probably_damaging(1) TCGA-75-5125-01 2 179974756 179974756 C G SESTD1 Splice_Site p.X654_splice 0.17 TCGA-75-5125-01 2 191769787 191769787 G C GLS Missense_Mutation p.L291F 0.08 tolerated(0.31) possibly_damaging(0.604) TCGA-75-5125-01 2 209198190 209198190 C G PIKFYVE Missense_Mutation p.S1372C 0.24 deleterious(0.01) probably_damaging(0.94) TCGA-75-5125-01 2 237489712 237489712 G A ACKR3 Missense_Mutation p.E202K 0.12 tolerated(0.74) possibly_damaging(0.657) TCGA-75-5125-01 2 27465212 27465212 G A CAD Missense_Mutation p.D2047N 0.54 tolerated(0.47) possibly_damaging(0.85) TCGA-75-5125-01 2 54127099 54127099 G T PSME4 Missense_Mutation p.S1114Y 0.04 tolerated(0.14) benign(0.042) TCGA-75-5125-01 2 89036090 89036090 G T RPIA Missense_Mutation p.G212V 0.34 deleterious(0) probably_damaging(0.998) TCGA-75-5125-01 3 108403121 108403121 C T DZIP3 Missense_Mutation p.T981I 0.45 deleterious(0) benign(0.196) TCGA-75-5125-01 3 124153192 124153192 G C KALRN Missense_Mutation p.Q954H 0.14 deleterious(0.03) probably_damaging(0.951) TCGA-75-5125-01 3 130159053 130159053 T C COL6A5 Silent p.P1957P 0.07 TCGA-75-5125-01 3 3188226 3188226 G C TRNT1 Missense_Mutation p.E241Q 0.07 deleterious(0) probably_damaging(1) TCGA-75-5125-01 3 38181459 38181459 G A MYD88 Missense_Mutation p.A158T 0.58 tolerated(0.73) benign(0.008) TCGA-75-5125-01 3 39452305 39452305 C A RPSA Missense_Mutation p.P105T 0.45 deleterious(0.01) probably_damaging(0.92) TCGA-75-5125-01 3 443339 443339 C A CHL1 Missense_Mutation p.P1139Q 0.27 deleterious(0.05) probably_damaging(0.971) TCGA-75-5125-01 4 114257151 114257151 C - ANK2 Frame_Shift_Del p.Q1178Rfs*17 0.15 TCGA-75-5125-01 4 123258169 123258169 A T KIAA1109 Silent p.R4048R 0.38 TCGA-75-5125-01 4 123317479 123317479 G T ADAD1 Missense_Mutation p.R224L 0.31 deleterious(0.02) benign(0.013) TCGA-75-5125-01 4 13605270 13605270 C A BOD1L1 Missense_Mutation p.G1085V 0.21 probably_damaging(0.994) TCGA-75-5125-01 4 146059096 146059096 C T OTUD4 Missense_Mutation p.R879Q 0.19 tolerated(0.57) benign(0.135) TCGA-75-5125-01 4 155256122 155256122 G C DCHS2 Missense_Mutation p.L372V 0.34 tolerated(0.08) benign(0.196) TCGA-75-5125-01 4 3011428 3011428 G C GRK4 Missense_Mutation p.G197A 0.09 deleterious(0) probably_damaging(1) TCGA-75-5125-01 4 41747973 41747973 C T PHOX2B Missense_Mutation p.A266T 0.36 tolerated_low_confidence(0.68) unknown(0) TCGA-75-5125-01 4 52860700 52860700 G C LRRC66 Missense_Mutation p.L830V 0.14 tolerated(0.19) benign(0.074) TCGA-75-5125-01 4 55138624 55138624 G C PDGFRA Missense_Mutation p.R434T 0.19 tolerated(0.75) benign(0.001) TCGA-75-5125-01 4 71347553 71347553 G T MUC7 Missense_Mutation p.K364N 0.10 tolerated_low_confidence(0.09) unknown(0) TCGA-75-5125-01 4 73956685 73956685 T C ANKRD17 Silent p.L2220L 0.19 TCGA-75-5125-01 4 84216631 84216631 G A HPSE Silent p.L500L 0.18 TCGA-75-5125-01 5 1278792 1278792 G A TERT Silent p.A750A 0.35 TCGA-75-5125-01 5 140215724 140215724 G T PCDHA7 Missense_Mutation p.G586C 0.29 deleterious_low_confidence(0.02) benign(0.371) TCGA-75-5125-01 5 140615771 140615771 G T PCDHB18 RNA 0.28 TCGA-75-5125-01 5 140731741 140731741 G T PCDHGB1 Silent p.L638L 0.29 TCGA-75-5125-01 5 140811194 140811194 C T PCDHGA12 Nonsense_Mutation p.Q290* 0.11 TCGA-75-5125-01 5 147009296 147009296 G T JAKMIP2 Missense_Mutation p.P630H 0.22 tolerated(0.11) probably_damaging(0.997) TCGA-75-5125-01 5 153429449 153429449 C G MFAP3 Missense_Mutation p.S56W 0.26 deleterious_low_confidence(0.05) possibly_damaging(0.877) TCGA-75-5125-01 5 156353318 156353318 C T TIMD4 Missense_Mutation p.D284N 0.09 tolerated(0.28) benign(0.021) TCGA-75-5125-01 5 159680453 159680453 C A CCNJL Missense_Mutation p.A414S 0.14 tolerated(1) benign(0.007) TCGA-75-5125-01 5 180219003 180219003 C A MGAT1 Missense_Mutation p.Q323H 0.29 probably_damaging(0.972) TCGA-75-5125-01 5 37180987 37180987 G A C5orf42 Nonsense_Mutation p.Q1848* 0.11 TCGA-75-5125-01 5 43175096 43175096 A G ZNF131 Missense_Mutation p.E544G 0.08 tolerated_low_confidence(0.08) benign(0.046) TCGA-75-5125-01 5 7709400 7709400 G A ADCY2 Missense_Mutation p.R493H 0.07 deleterious(0.01) benign(0.134) TCGA-75-5125-01 5 82834300 82834300 T C VCAN Silent p.R1826R 0.29 TCGA-75-5125-01 5 99871346 99871346 G A FAM174A Missense_Mutation p.E38K 0.12 tolerated_low_confidence(0.05) possibly_damaging(0.635) TCGA-75-5125-01 6 11005676 11005676 G A ELOVL2 Missense_Mutation p.L62F 0.07 tolerated(1) benign(0.004) TCGA-75-5125-01 6 119670168 119670168 C A MAN1A1 Silent p.G21G 0.46 TCGA-75-5125-01 6 132203498 132203498 C T ENPP1 Missense_Mutation p.T705M 0.12 deleterious(0.04) benign(0.16) TCGA-75-5125-01 6 154412465 154412465 T A OPRM1 Missense_Mutation p.L434Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-75-5125-01 6 159457919 159457919 G C TAGAP Missense_Mutation p.P379R 0.24 deleterious(0) probably_damaging(0.998) TCGA-75-5125-01 6 160176087 160176087 A C WTAP Missense_Mutation p.D212A 0.16 deleterious(0) possibly_damaging(0.81) TCGA-75-5125-01 6 161508774 161508774 G A MAP3K4 Missense_Mutation p.E871K 0.09 tolerated(0.49) benign(0.007) TCGA-75-5125-01 6 167794627 167794627 C T TCP10 Silent p.G87G 0.18 TCGA-75-5125-01 6 42626404 42626404 A C UBR2 Missense_Mutation p.K1028N 0.40 deleterious(0) probably_damaging(0.938) TCGA-75-5125-01 7 103275985 103275985 C A RELN Silent p.T784T 0.32 TCGA-75-5125-01 7 115624414 115624414 G T TFEC Missense_Mutation p.H28N 0.21 tolerated(1) benign(0) TCGA-75-5125-01 7 148895816 148895816 C A ZNF282 Missense_Mutation p.P186H 0.08 deleterious(0) probably_damaging(0.999) TCGA-75-5125-01 7 150325424 150325425 - A GIMAP6 Frame_Shift_Ins p.G88Wfs*5 0.30 TCGA-75-5125-01 7 151372617 151372617 G T PRKAG2 Silent p.I191I 0.27 TCGA-75-5125-01 7 17378833 17378833 C T AHR Nonsense_Mutation p.Q462* 0.18 TCGA-75-5125-01 7 17379714 17379714 G C AHR Missense_Mutation p.Q755H 0.31 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-75-5125-01 7 31378583 31378584 - TTCGC NEUROD6 Frame_Shift_Ins p.N100Kfs*20 0.16 TCGA-75-5125-01 7 44113229 44113229 C T POLM Missense_Mutation p.E465K 0.19 tolerated(0.95) benign(0.006) TCGA-75-5125-01 7 45067252 45067252 G C CCM2 5'UTR 0.32 TCGA-75-5125-01 7 50513042 50513042 A G FIGNL1 Silent p.F648F 0.16 TCGA-75-5125-01 7 75686766 75686766 G T MDH2 Missense_Mutation p.G92C 0.13 deleterious(0.02) benign(0.317) TCGA-75-5125-01 7 82580373 82580373 C A PCLO Silent p.T3177T 0.16 TCGA-75-5125-01 8 100514085 100514085 A G VPS13B Silent p.T1347T 0.07 TCGA-75-5125-01 8 105261015 105261015 G T RIMS2 Missense_Mutation p.R1188L 0.34 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-75-5125-01 8 113314099 113314099 C T CSMD3 Missense_Mutation p.G2788E 0.19 deleterious(0) probably_damaging(0.998) TCGA-75-5125-01 8 121019043 121019044 GT A DEPTOR Splice_Site p.X309_splice 0.27 TCGA-75-5125-01 8 124031533 124031558 CTCATTGATTACCCTGCAAAGAGAGC - DERL1 Splice_Site p.X169_splice 0.18 TCGA-75-5125-01 8 143921919 143921919 C A GML Silent p.R22R 0.36 TCGA-75-5125-01 8 27464027 27464027 C A CLU Missense_Mutation p.E87D 0.29 tolerated(0.62) benign(0.005) TCGA-75-5125-01 8 29203101 29203101 T C DUSP4 Intron 0.29 TCGA-75-5125-01 8 66517564 66517566 TGC - ARMC1 In_Frame_Del p.A197del 0.29 TCGA-75-5125-01 8 71520431 71520431 C T TRAM1 Missense_Mutation p.A2T 0.30 tolerated(0.1) benign(0.015) TCGA-75-5125-01 8 82441712 82441712 T G FABP12 Missense_Mutation p.E69D 0.28 deleterious(0.02) possibly_damaging(0.611) TCGA-75-5125-01 9 103102556 103102556 C A TEX10 Missense_Mutation p.R411S 0.04 tolerated(0.06) benign(0.003) TCGA-75-5125-01 9 121929698 121929698 G A BRINP1 Silent p.I650I 0.47 TCGA-75-5125-01 9 19346132 19346132 T C DENND4C Missense_Mutation p.M1073T 0.12 deleterious(0.05) possibly_damaging(0.72) TCGA-75-5125-01 9 20414405 20414405 G A MLLT3 Missense_Mutation p.H147Y 0.13 tolerated(1) benign(0.018) TCGA-75-5125-01 9 4564398 4564398 T C SLC1A1 Missense_Mutation p.I127T 0.14 tolerated(0.44) possibly_damaging(0.561) TCGA-75-5125-01 9 74324227 74324227 C A TMEM2 Missense_Mutation p.C978F 0.50 deleterious(0) probably_damaging(0.999) TCGA-75-5125-01 X 102529123 102529123 C - TCEAL5 Frame_Shift_Del p.T124Rfs*17 0.21 TCGA-75-5125-01 X 122319788 122319788 A G GRIA3 Missense_Mutation p.N72D 0.08 tolerated(0.6) benign(0.366) TCGA-75-5125-01 X 138844209 138844209 T A ATP11C Nonsense_Mutation p.K854* 0.62 TCGA-75-5125-01 X 141291447 141291447 C G MAGEC2 Missense_Mutation p.W109C 0.42 tolerated(0.14) possibly_damaging(0.472) TCGA-75-5125-01 X 155233498 155233498 G T IL9R Silent p.P137P 0.14 TCGA-75-5125-01 X 34148019 34148019 C A FAM47A 3'UTR 0.43 TCGA-75-5125-01 X 34148020 34148020 C A FAM47A Nonstop_Mutation p.*792Yext*23 0.40 TCGA-75-5125-01 X 34962818 34962818 C G FAM47B Missense_Mutation p.P624A 0.07 deleterious(0.02) probably_damaging(0.997) TCGA-75-5125-01 X 48382369 48382370 - GT EBP Frame_Shift_Ins p.G73Vfs*7 0.50 TCGA-75-5125-01 X 50136332 50136332 G T DGKK Intron 0.78 TCGA-75-5125-01 X 63411835 63411835 A T AMER1 Silent p.S444S 0.41 TCGA-75-5125-01 X 82763628 82763628 C A POU3F4 Missense_Mutation p.P99Q 0.60 tolerated(0.06) benign(0.411) TCGA-75-5125-01 X 84560871 84560871 C T POF1B Missense_Mutation p.E455K 0.20 deleterious(0) possibly_damaging(0.803) TCGA-75-5125-01 X 96139810 96139810 G T RPA4 Missense_Mutation p.M167I 0.33 tolerated(0.38) benign(0.002) TCGA-75-5126-01 10 102763281 102763281 G A LZTS2 Silent p.L142L 0.27 TCGA-75-5126-01 10 105215108 105215108 C G CALHM1 Missense_Mutation p.E318Q 0.12 tolerated(0.31) benign(0.079) TCGA-75-5126-01 10 106917010 106917010 G T SORCS3 Missense_Mutation p.D533Y 0.27 deleterious(0) probably_damaging(0.986) TCGA-75-5126-01 10 123845089 123845089 C T TACC2 Missense_Mutation p.S1025F 0.22 benign(0.423) TCGA-75-5126-01 10 129913972 129913972 C A MKI67 Nonsense_Mutation p.E234* 0.22 TCGA-75-5126-01 10 48388080 48388080 A C RBP3 Missense_Mutation p.L933R 0.17 deleterious(0) possibly_damaging(0.766) TCGA-75-5126-01 10 50599243 50599243 C A DRGX Missense_Mutation p.Q38H 0.24 deleterious(0) probably_damaging(0.999) TCGA-75-5126-01 10 50820238 50820238 G T SLC18A3 Silent p.V484V 0.20 TCGA-75-5126-01 10 55568824 55568824 T G PCDH15 Silent p.A596A 0.24 TCGA-75-5126-01 10 60549174 60549174 T A BICC1 Silent p.T251T 0.23 TCGA-75-5126-01 10 67726441 67726441 G A CTNNA3 Missense_Mutation p.H777Y 0.23 deleterious(0) unknown(0) TCGA-75-5126-01 10 75283501 75283501 C G USP54 Missense_Mutation p.E734D 0.24 tolerated(0.08) probably_damaging(0.99) TCGA-75-5126-01 10 75936567 75936567 G T ADK Intron 0.32 TCGA-75-5126-01 10 7785208 7785208 C G ITIH2 Missense_Mutation p.S732C 0.06 deleterious(0) probably_damaging(0.966) TCGA-75-5126-01 10 96099595 96099595 C T NOC3L Silent p.Q621Q 0.25 TCGA-75-5126-01 10 97763935 97763935 C G CC2D2B 5'UTR 0.34 TCGA-75-5126-01 10 99126286 99126286 T C RRP12 Missense_Mutation p.Q1103R 0.23 tolerated(0.1) benign(0.002) TCGA-75-5126-01 11 103057207 103057207 A T DYNC2H1 Silent p.V2290V 0.17 TCGA-75-5126-01 11 103797775 103797775 C A PDGFD Missense_Mutation p.E284D 0.12 deleterious(0.04) probably_damaging(0.963) TCGA-75-5126-01 11 111779603 111779603 G A CRYAB Missense_Mutation p.S138L 0.08 deleterious(0) probably_damaging(0.992) TCGA-75-5126-01 11 113775684 113775684 G A HTR3B Nonsense_Mutation p.W10* 0.10 TCGA-75-5126-01 11 118764836 118764836 C T CXCR5 Missense_Mutation p.H195Y 0.10 tolerated(1) benign(0.001) TCGA-75-5126-01 11 118765377 118765377 C T BCL9L 3'UTR 0.10 TCGA-75-5126-01 11 119029536 119029536 C T ABCG4 Intron 0.10 TCGA-75-5126-01 11 119183321 119183321 C A MCAM Silent p.V259V 0.08 TCGA-75-5126-01 11 119206115 119206115 G A RNF26 Missense_Mutation p.E95K 0.13 deleterious(0.02) benign(0.124) TCGA-75-5126-01 11 120776177 120776177 G T GRIK4 Missense_Mutation p.G484V 0.17 deleterious(0) probably_damaging(1) TCGA-75-5126-01 11 120998690 120998690 G T TECTA Silent p.T668T 0.14 TCGA-75-5126-01 11 123900895 123900895 C A OR10G8 Missense_Mutation p.A189E 0.15 tolerated(0.11) probably_damaging(0.955) TCGA-75-5126-01 11 124189498 124189498 A T OR8D2 Missense_Mutation p.L199Q 0.12 deleterious(0) possibly_damaging(0.867) TCGA-75-5126-01 11 125478037 125478037 G - STT3A Frame_Shift_Del p.V273Sfs*18 0.12 TCGA-75-5126-01 11 132016339 132016339 G T NTM Missense_Mutation p.G111C 0.13 deleterious(0) probably_damaging(1) TCGA-75-5126-01 11 134244036 134244036 T A GLB1L2 Intron 0.15 TCGA-75-5126-01 11 17741348 17741348 C A MYOD1 Missense_Mutation p.P7T 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-75-5126-01 11 1774823 1774823 C A CTSD Missense_Mutation p.W383C 0.14 deleterious(0) probably_damaging(1) TCGA-75-5126-01 11 18194908 18194908 C A MRGPRX4 Nonsense_Mutation p.C35* 0.19 TCGA-75-5126-01 11 18231409 18231409 A G RP11-113D6.10 Silent p.P65P 0.07 TCGA-75-5126-01 11 18231859 18231859 G - RP11-113D6.10 3'UTR 0.15 TCGA-75-5126-01 11 30032746 30032746 T A KCNA4 Missense_Mutation p.S494C 0.20 deleterious(0) probably_damaging(0.993) TCGA-75-5126-01 11 32674742 32674742 T A CCDC73 Missense_Mutation p.Q289L 0.08 deleterious(0) probably_damaging(0.966) TCGA-75-5126-01 11 33308507 33308507 C T HIPK3 Nonsense_Mutation p.Q183* 0.12 TCGA-75-5126-01 11 35463205 35463205 G T PAMR1 Missense_Mutation p.P303Q 0.27 tolerated(0.19) probably_damaging(0.955) TCGA-75-5126-01 11 45274079 45274079 C G SYT13 Missense_Mutation p.D247H 0.22 deleterious(0) probably_damaging(0.994) TCGA-75-5126-01 11 45671248 45671248 G T CHST1 Missense_Mutation p.P409H 0.07 deleterious(0) probably_damaging(0.999) TCGA-75-5126-01 11 47493789 47493789 G A CELF1 Missense_Mutation p.P511L 0.16 deleterious(0) probably_damaging(0.999) TCGA-75-5126-01 11 4843137 4843137 G T OR51F2 Missense_Mutation p.M174I 0.10 tolerated(0.45) benign(0) TCGA-75-5126-01 11 5529338 5529338 C T UBQLN3 Missense_Mutation p.R484K 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.695) TCGA-75-5126-01 11 5537461 5537461 C A UBQLNL Missense_Mutation p.V71L 0.11 deleterious(0) probably_damaging(0.998) TCGA-75-5126-01 11 55405905 55405905 C T OR4P4 Silent p.L24L 0.35 TCGA-75-5126-01 11 55563206 55563206 A T OR5D14 Missense_Mutation p.T59S 0.14 deleterious(0.01) benign(0.126) TCGA-75-5126-01 11 55594977 55594977 C G OR5L2 Missense_Mutation p.L95V 0.10 tolerated(0.4) benign(0.008) TCGA-75-5126-01 11 55653297 55653297 G T TRIM51 Missense_Mutation p.W131C 0.11 tolerated(0.24) possibly_damaging(0.664) TCGA-75-5126-01 11 55703124 55703124 C A OR5I1 Silent p.T251T 0.16 TCGA-75-5126-01 11 55860792 55860792 C A OR8I2 Silent p.G3G 0.07 TCGA-75-5126-01 11 56258197 56258197 T C OR5M8 Missense_Mutation p.Y217C 0.07 deleterious(0.03) possibly_damaging(0.874) TCGA-75-5126-01 11 57076892 57076892 C T TNKS1BP1 Missense_Mutation p.R1098Q 0.18 tolerated(0.47) benign(0.008) TCGA-75-5126-01 11 57970865 57970865 C A OR1S2 Silent p.L263L 0.24 TCGA-75-5126-01 11 5809298 5809298 A G OR52N1 Missense_Mutation p.I250T 0.11 deleterious(0.03) probably_damaging(1) TCGA-75-5126-01 11 60235735 60235735 C G MS4A1 Missense_Mutation p.L230V 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-75-5126-01 11 62186609 62186609 C G SCGB1A1 Silent p.L14L 0.17 TCGA-75-5126-01 11 63230947 63230947 C A HRASLS5 3'UTR 0.10 TCGA-75-5126-01 11 63487182 63487182 G T RTN3 Missense_Mutation p.G403V 0.11 deleterious(0.04) benign(0.327) TCGA-75-5126-01 11 64821818 64821818 T A NAALADL1 Missense_Mutation p.N299I 0.09 deleterious(0.03) benign(0.042) TCGA-75-5126-01 11 65721100 65721100 G T TSGA10IP RNA 0.19 TCGA-75-5126-01 11 66333336 66333336 G A CTSF Silent p.L310L 0.13 TCGA-75-5126-01 11 6807219 6807219 G T OR2AG1 Nonstop_Mutation p.*317Yext*? 0.17 TCGA-75-5126-01 11 6807220 6807220 G T OR2AG1 3'UTR 0.17 TCGA-75-5126-01 11 68846407 68846407 C T TPCN2 Silent p.L486L 0.16 TCGA-75-5126-01 11 7070902 7070902 G T NLRP14 Silent p.L708L 0.07 TCGA-75-5126-01 11 71259944 71259944 A T KRTAP5-9 Missense_Mutation p.S81C 0.12 deleterious_low_confidence(0.01) unknown(0) TCGA-75-5126-01 11 7530705 7530705 G A OLFML1 Missense_Mutation p.M165I 0.05 tolerated(0.08) possibly_damaging(0.625) TCGA-75-5126-01 11 75727892 75727892 G T UVRAG Missense_Mutation p.G365V 0.09 deleterious(0) probably_damaging(0.989) TCGA-75-5126-01 11 75852456 75852456 G T UVRAG Nonstop_Mutation p.*700Lext*18 0.09 TCGA-75-5126-01 11 89896521 89896521 T C NAALAD2 Silent p.F373F 0.19 TCGA-75-5126-01 11 92616425 92616425 C A FAT3 Missense_Mutation p.P4268H 0.13 benign(0.129) TCGA-75-5126-01 12 101295476 101295476 G C ANO4 5'UTR 0.11 TCGA-75-5126-01 12 10145867 10145867 C T CLEC1B Missense_Mutation p.G189R 0.13 tolerated(0.52) benign(0.047) TCGA-75-5126-01 12 10151728 10151728 G C CLEC1B 5'UTR 0.11 TCGA-75-5126-01 12 112891116 112891116 T C PTPN11 Silent p.S150S 0.12 TCGA-75-5126-01 12 124824973 124824973 C G NCOR2 Missense_Mutation p.L1785F 0.06 probably_damaging(0.962) TCGA-75-5126-01 12 12814875 12814875 G A GPR19 Missense_Mutation p.P170S 0.28 deleterious(0) probably_damaging(1) TCGA-75-5126-01 12 12815044 12815044 G A GPR19 Silent p.L113L 0.21 TCGA-75-5126-01 12 12815046 12815046 G A GPR19 Missense_Mutation p.L113F 0.19 deleterious(0.01) probably_damaging(0.978) TCGA-75-5126-01 12 12815116 12815116 G A GPR19 Silent p.V89V 0.23 TCGA-75-5126-01 12 12815160 12815160 G A GPR19 Silent p.L75L 0.21 TCGA-75-5126-01 12 129822344 129822344 G T TMEM132D Nonsense_Mutation p.Y378* 0.24 TCGA-75-5126-01 12 21422677 21422677 T A SLCO1A2 Silent p.A606A 0.15 TCGA-75-5126-01 12 21919187 21919187 G C KCNJ8 Missense_Mutation p.P249A 0.27 tolerated(0.13) benign(0.005) TCGA-75-5126-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.16 deleterious(0.04) probably_damaging(0.993) TCGA-75-5126-01 12 272696 272696 A G IQSEC3 Missense_Mutation p.S874G 0.22 deleterious(0) benign(0.017) TCGA-75-5126-01 12 29639183 29639183 C A OVCH1 Missense_Mutation p.G331C 0.18 tolerated(0.18) possibly_damaging(0.634) TCGA-75-5126-01 12 29908738 29908738 C A TMTC1 Missense_Mutation p.G212V 0.15 deleterious(0) probably_damaging(0.997) TCGA-75-5126-01 12 305962 305962 G A SLC6A12 Missense_Mutation p.L388F 0.07 deleterious(0) probably_damaging(1) TCGA-75-5126-01 12 31632962 31632962 C A DENND5B Missense_Mutation p.M155I 0.14 tolerated(0.19) benign(0.002) TCGA-75-5126-01 12 32751515 32751515 G C FGD4 Missense_Mutation p.D229H 0.22 deleterious(0) possibly_damaging(0.824) TCGA-75-5126-01 12 39064600 39064600 C G CPNE8 Missense_Mutation p.M479I 0.19 deleterious(0) probably_damaging(0.958) TCGA-75-5126-01 12 41967324 41967324 G T PDZRN4 Missense_Mutation p.A915S 0.20 deleterious(0) probably_damaging(0.991) TCGA-75-5126-01 12 48190850 48190850 T C HDAC7 Missense_Mutation p.K218R 0.10 tolerated(0.64) probably_damaging(0.997) TCGA-75-5126-01 12 48919816 48919816 G T OR8S1 Missense_Mutation p.Q134H 0.20 deleterious(0.03) benign(0.052) TCGA-75-5126-01 12 49420271 49420271 C G KMT2D Missense_Mutation p.D5160H 0.33 unknown(0) TCGA-75-5126-01 12 50492589 50492589 C G SMARCD1 Missense_Mutation p.F495L 0.09 tolerated(0.41) benign(0.02) TCGA-75-5126-01 12 51138374 51138374 G T DIP2B Missense_Mutation p.V1495L 0.15 deleterious(0.02) probably_damaging(0.969) TCGA-75-5126-01 12 5155205 5155205 G T KCNA5 3'UTR 0.33 TCGA-75-5126-01 12 52284753 52284753 C A ANKRD33 Silent p.S341S 0.29 TCGA-75-5126-01 12 54635431 54635431 C A CBX5 3'UTR 0.16 TCGA-75-5126-01 12 55024687 55024687 G A LACRT Missense_Mutation p.P136S 0.09 tolerated_low_confidence(0.12) possibly_damaging(0.803) TCGA-75-5126-01 12 55420820 55420820 C T NEUROD4 Silent p.V199V 0.08 TCGA-75-5126-01 12 55715183 55715183 C T OR6C1 Missense_Mutation p.S267F 0.07 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-75-5126-01 12 56230705 56230705 G A MMP19 3'UTR 0.29 TCGA-75-5126-01 12 56563372 56563372 C T SMARCC2 Missense_Mutation p.E855K 0.09 deleterious(0.02) benign(0.305) TCGA-75-5126-01 12 5724394 5724394 T C ANO2 Missense_Mutation p.N629S 0.06 deleterious(0.04) possibly_damaging(0.775) TCGA-75-5126-01 12 57588394 57588394 C T LRP1 Silent p.F2701F 0.20 TCGA-75-5126-01 12 57872492 57872492 G T ARHGAP9 Missense_Mutation p.P122Q 0.09 deleterious(0.03) benign(0.377) TCGA-75-5126-01 12 58158802 58158802 A C CYP27B1 Missense_Mutation p.F261C 0.11 deleterious(0) probably_damaging(0.998) TCGA-75-5126-01 12 6602071 6602071 C G MRPL51 Missense_Mutation p.E49D 0.06 deleterious(0.01) possibly_damaging(0.676) TCGA-75-5126-01 12 72004836 72004836 A C ZFC3H1 Splice_Site p.X1923_splice 0.10 TCGA-75-5126-01 12 75434879 75434879 A T KCNC2 3'UTR 0.13 TCGA-75-5126-01 12 7548878 7548878 A T CD163L1 Nonsense_Mutation p.C621* 0.30 TCGA-75-5126-01 12 7985403 7985403 G - SLC2A14 Frame_Shift_Del p.P32Qfs*3 0.10 TCGA-75-5126-01 12 8075436 8075437 - T SLC2A3 Frame_Shift_Ins p.L418Yfs*35 0.22 TCGA-75-5126-01 12 85449828 85449828 G T LRRIQ1 Missense_Mutation p.K419N 0.09 tolerated(0.05) benign(0.232) TCGA-75-5126-01 12 85677633 85677633 G A ALX1 Silent p.E170E 0.28 TCGA-75-5126-01 12 8672847 8672847 G A CLEC4D Missense_Mutation p.R137K 0.09 tolerated(0.33) benign(0.057) TCGA-75-5126-01 12 88483117 88483117 T C CEP290 Missense_Mutation p.K1241E 0.07 probably_damaging(0.999) TCGA-75-5126-01 12 93100630 93100630 G A C12orf74 Missense_Mutation p.G75R 0.26 tolerated(0.77) benign(0.001) TCGA-75-5126-01 12 95453709 95453709 A G NR2C1 Missense_Mutation p.C113R 0.15 deleterious(0) probably_damaging(1) TCGA-75-5126-01 13 100925576 100925576 C G PCCA Missense_Mutation p.F347L 0.16 deleterious(0) probably_damaging(1) TCGA-75-5126-01 13 103290630 103290630 C A TPP2 Silent p.L626L 0.13 TCGA-75-5126-01 13 103492148 103492148 T A BIVM-ERCC5 Missense_Mutation p.M454K 0.09 tolerated_low_confidence(0.11) benign(0.025) TCGA-75-5126-01 13 103514690 103514690 T A BIVM-ERCC5 Missense_Mutation p.D823E 0.09 tolerated_low_confidence(0.49) benign(0.007) TCGA-75-5126-01 13 109438076 109438076 T A MYO16 Missense_Mutation p.Y179N 0.08 deleterious(0) probably_damaging(0.987) TCGA-75-5126-01 13 109753146 109753146 G C MYO16 Missense_Mutation p.A1095P 0.15 deleterious(0.01) possibly_damaging(0.868) TCGA-75-5126-01 13 20237249 20237249 G A MPHOSPH8 Missense_Mutation p.E668K 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-75-5126-01 13 31232508 31232508 G T USPL1 Missense_Mutation p.S765I 0.24 deleterious(0) possibly_damaging(0.785) TCGA-75-5126-01 13 31724148 31724148 T G HSPH1 Missense_Mutation p.K360N 0.17 deleterious(0) probably_damaging(0.99) TCGA-75-5126-01 13 35684977 35684977 G T NBEA Missense_Mutation p.A622S 0.17 tolerated(0.13) benign(0.019) TCGA-75-5126-01 13 36401822 36401822 C A DCLK1 Nonsense_Mutation p.E453* 0.13 TCGA-75-5126-01 13 38229278 38229278 C A TRPC4 Missense_Mutation p.V611F 0.16 deleterious(0) probably_damaging(0.996) TCGA-75-5126-01 13 41933097 41933097 G T NAA16 Missense_Mutation p.R470M 0.23 deleterious(0) probably_damaging(0.998) TCGA-75-5126-01 13 47279214 47279214 A G LRCH1 Missense_Mutation p.D471G 0.04 tolerated(0.05) benign(0.236) TCGA-75-5126-01 13 58209170 58209170 G C PCDH17 Silent p.A830A 0.20 TCGA-75-5126-01 13 77786258 77786258 T C MYCBP2 Missense_Mutation p.Y994C 0.21 probably_damaging(0.977) TCGA-75-5126-01 13 78167670 78167670 C T SCEL Silent p.I238I 0.08 TCGA-75-5126-01 13 95231010 95231010 T A TGDS Silent p.I211I 0.10 TCGA-75-5126-01 14 106539102 106539102 T A IGHV1-8 Missense_Mutation p.T110S 0.28 tolerated(0.4) benign(0.121) TCGA-75-5126-01 14 106967176 106967176 C T IGHV1-46 Missense_Mutation p.G75D 0.14 tolerated(0.08) benign(0.032) TCGA-75-5126-01 14 20444457 20444457 C A OR4K15 Silent p.A260A 0.05 TCGA-75-5126-01 14 20711609 20711609 C A OR11H4 Missense_Mutation p.T220N 0.08 tolerated(0.1) benign(0.248) TCGA-75-5126-01 14 20843947 20843947 G A TEP1 Silent p.V2110V 0.11 TCGA-75-5126-01 14 20864787 20864787 T A TEP1 Missense_Mutation p.Q551L 0.19 deleterious(0.04) probably_damaging(0.971) TCGA-75-5126-01 14 21052079 21052079 T A RNASE11 Silent p.T185T 0.10 TCGA-75-5126-01 14 21108870 21108870 C A OR6S1 Missense_Mutation p.E327D 0.10 deleterious_low_confidence(0) benign(0.023) TCGA-75-5126-01 14 21465051 21465051 G C METTL17 3'UTR 0.17 TCGA-75-5126-01 14 21502310 21502310 C A RNASE13 Missense_Mutation p.K46N 0.16 tolerated(0.33) benign(0.335) TCGA-75-5126-01 14 21897346 21897346 T A CHD8 Missense_Mutation p.Q331L 0.10 deleterious_low_confidence(0.04) benign(0.084) TCGA-75-5126-01 14 23888489 23888489 T A MYH7 Missense_Mutation p.Q1290L 0.15 tolerated(0.15) benign(0.092) TCGA-75-5126-01 14 31355160 31355160 T A COCH Missense_Mutation p.D373E 0.07 deleterious(0) probably_damaging(0.998) TCGA-75-5126-01 14 65527989 65527989 G C FNTB Missense_Mutation p.E425Q 0.15 tolerated_low_confidence(0.15) benign(0.05) TCGA-75-5126-01 14 69787507 69787507 A G GALNT16 Missense_Mutation p.Y86C 0.07 deleterious(0) probably_damaging(0.999) TCGA-75-5126-01 14 74959988 74959988 G A NPC2 5'UTR 0.36 TCGA-75-5126-01 14 75142581 75142581 G C AREL1 Missense_Mutation p.L301V 0.09 deleterious(0) probably_damaging(0.978) TCGA-75-5126-01 14 76121288 76121288 G A C14orf1 Silent p.I55I 0.19 TCGA-75-5126-01 14 76349199 76349199 A T TTLL5 Missense_Mutation p.N1232Y 0.10 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-75-5126-01 14 88934347 88934347 C G PTPN21 3'UTR 0.13 TCGA-75-5126-01 14 89069242 89069242 C T ZC3H14 Missense_Mutation p.P529S 0.19 tolerated(0.51) probably_damaging(0.999) TCGA-75-5126-01 14 90651285 90651285 G T KCNK13 Missense_Mutation p.G389W 0.35 deleterious(0) probably_damaging(0.97) TCGA-75-5126-01 14 92251584 92251584 T C TC2N Missense_Mutation p.I428M 0.18 tolerated(0.1) benign(0.285) TCGA-75-5126-01 14 94849012 94849012 C T SERPINA1 Missense_Mutation p.G188D 0.12 deleterious(0.04) benign(0.122) TCGA-75-5126-01 14 94964298 94964298 G A SERPINA12 Missense_Mutation p.P146L 0.15 tolerated(0.49) benign(0.137) TCGA-75-5126-01 14 96137667 96137667 G A TCL6 Splice_Site 0.09 TCGA-75-5126-01 15 101434150 101434150 C A ALDH1A3 Intron 0.12 TCGA-75-5126-01 15 22935909 22935909 A G CYFIP1 Missense_Mutation p.Y282C 0.14 tolerated(0.16) possibly_damaging(0.839) TCGA-75-5126-01 15 22945071 22945071 A C CYFIP1 Missense_Mutation p.Q381P 0.40 tolerated(0.38) benign(0) TCGA-75-5126-01 15 23052736 23052736 G A NIPA1 Missense_Mutation p.L113F 0.07 tolerated(1) benign(0.057) TCGA-75-5126-01 15 25463836 25463836 G C SNORD115-27 5'Flank 0.07 TCGA-75-5126-01 15 42139582 42139582 C A PLA2G4B Missense_Mutation p.F896L 0.08 deleterious(0) probably_damaging(0.98) TCGA-75-5126-01 15 50916388 50916388 G A TRPM7 Missense_Mutation p.P472L 0.07 deleterious(0) possibly_damaging(0.775) TCGA-75-5126-01 15 52844126 52844126 C G ARPP19 3'UTR 0.09 TCGA-75-5126-01 15 60649389 60649389 C A ANXA2 Missense_Mutation p.R153I 0.11 deleterious(0) possibly_damaging(0.685) TCGA-75-5126-01 15 62202476 62202476 G C VPS13C Nonsense_Mutation p.S2915* 0.15 TCGA-75-5126-01 15 69238346 69238346 C A SPESP1 Missense_Mutation p.A158E 0.08 tolerated(0.25) benign(0.268) TCGA-75-5126-01 15 75974658 75974658 G T CSPG4 Silent p.A1642A 0.07 TCGA-75-5126-01 15 77471964 77471964 G A PEAK1 Nonsense_Mutation p.Q769* 0.09 TCGA-75-5126-01 15 77472167 77472167 G C PEAK1 Nonsense_Mutation p.S701* 0.05 TCGA-75-5126-01 15 85438606 85438606 C T SLC28A1 Intron 0.09 TCGA-75-5126-01 15 90258235 90258235 T A WDR93 Missense_Mutation p.V222E 0.09 deleterious(0) probably_damaging(1) TCGA-75-5126-01 16 11071113 11071113 G T CLEC16A Missense_Mutation p.V254L 0.16 deleterious(0) benign(0.286) TCGA-75-5126-01 16 20043061 20043061 G T GPR139 Missense_Mutation p.P353Q 0.08 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-75-5126-01 16 22330212 22330212 C T POLR3E Silent p.L311L 0.19 TCGA-75-5126-01 16 23678456 23678456 G T DCTN5 Silent p.T180T 0.15 TCGA-75-5126-01 16 24801038 24801038 A T TNRC6A Missense_Mutation p.S359C 0.09 tolerated(0.08) probably_damaging(0.99) TCGA-75-5126-01 16 25235823 25235823 C T AQP8 Silent p.A176A 0.16 TCGA-75-5126-01 16 27499680 27499680 C A GTF3C1 Missense_Mutation p.G1190C 0.12 tolerated(0.06) benign(0.405) TCGA-75-5126-01 16 28948593 28948593 C A CD19 Silent p.G400G 0.32 TCGA-75-5126-01 16 28948594 28948594 C A CD19 Missense_Mutation p.P401T 0.32 tolerated(0.29) probably_damaging(0.991) TCGA-75-5126-01 16 31095549 31095549 G A PRSS53 Silent p.F511F 0.18 TCGA-75-5126-01 16 31277365 31277365 C A ITGAM Silent p.T108T 0.29 TCGA-75-5126-01 16 47117102 47117102 C T NETO2 3'UTR 0.13 TCGA-75-5126-01 16 4748910 4748910 G C ANKS3 Missense_Mutation p.A481G 0.10 deleterious(0) probably_damaging(0.999) TCGA-75-5126-01 16 50745464 50745464 C T NOD2 Silent p.L548L 0.12 TCGA-75-5126-01 16 53487410 53487410 C T RBL2 Silent p.D271D 0.09 TCGA-75-5126-01 16 56504618 56504618 G C OGFOD1 Missense_Mutation p.E400D 0.09 tolerated(0.16) benign(0.062) TCGA-75-5126-01 16 57994775 57994775 C T CNGB1 Missense_Mutation p.R168K 0.13 tolerated_low_confidence(1) benign(0.001) TCGA-75-5126-01 16 64981815 64981815 T C CDH11 Silent p.K694K 0.13 TCGA-75-5126-01 16 69724898 69724898 G A NFAT5 Silent p.L610L 0.11 TCGA-75-5126-01 16 71701199 71701199 C A PHLPP2 Nonsense_Mutation p.G556* 0.08 TCGA-75-5126-01 16 731479 731479 G A STUB1 Missense_Mutation p.D134N 0.22 deleterious(0) probably_damaging(0.991) TCGA-75-5126-01 16 7383060 7383060 G T RBFOX1 Missense_Mutation p.A20S 0.18 deleterious_low_confidence(0.04) possibly_damaging(0.867) TCGA-75-5126-01 16 76350405 76350405 C A CNTNAP4 Missense_Mutation p.L36M 0.22 deleterious(0) probably_damaging(0.999) TCGA-75-5126-01 16 76569454 76569454 C T CNTNAP4 Missense_Mutation p.T850I 0.17 deleterious(0) possibly_damaging(0.783) TCGA-75-5126-01 16 76569461 76569461 G T CNTNAP4 Missense_Mutation p.Q852H 0.13 deleterious(0) probably_damaging(0.992) TCGA-75-5126-01 16 81053854 81053854 G C CENPN Silent p.L168L 0.08 TCGA-75-5126-01 16 84014703 84014703 G T NECAB2 Missense_Mutation p.V144F 0.12 deleterious(0) probably_damaging(0.972) TCGA-75-5126-01 17 10304093 10304093 G A MYH8 Missense_Mutation p.R1117C 0.24 deleterious(0) benign(0.178) TCGA-75-5126-01 17 15502019 15502019 C A CDRT1 Intron 0.16 TCGA-75-5126-01 17 21731374 21731374 G T UBBP4 Intron 0.19 TCGA-75-5126-01 17 27050632 27050632 T G RPL23A Missense_Mutation p.Y144D 0.08 deleterious(0) possibly_damaging(0.665) TCGA-75-5126-01 17 28773009 28773009 G A CPD Missense_Mutation p.M948I 0.13 tolerated(0.41) benign(0.292) TCGA-75-5126-01 17 29632338 29632338 G A EVI2B Missense_Mutation p.S97F 0.17 deleterious(0) probably_damaging(0.919) TCGA-75-5126-01 17 30348281 30348281 C G LRRC37B Missense_Mutation p.S39C 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-75-5126-01 17 32965202 32965202 C A TMEM132E Missense_Mutation p.A969E 0.25 tolerated(1) benign(0.108) TCGA-75-5126-01 17 33591742 33591742 A T SLFN5 Missense_Mutation p.Q560L 0.12 deleterious(0) probably_damaging(0.991) TCGA-75-5126-01 17 33679766 33679766 C A SLFN11 Missense_Mutation p.G772V 0.13 deleterious(0.01) benign(0.209) TCGA-75-5126-01 17 34934557 34934557 C T GGNBP2 Silent p.C262C 0.12 TCGA-75-5126-01 17 35506835 35506835 C A ACACA Missense_Mutation p.V1878F 0.10 deleterious(0) possibly_damaging(0.739) TCGA-75-5126-01 17 40948569 40948569 G C WNK4 Silent p.V1234V 0.15 TCGA-75-5126-01 17 42475265 42475265 G C GPATCH8 Missense_Mutation p.H1394D 0.24 deleterious(0) unknown(0) TCGA-75-5126-01 17 42475368 42475368 G C GPATCH8 Missense_Mutation p.I1359M 0.14 deleterious(0.02) unknown(0) TCGA-75-5126-01 17 4712637 4712637 C G PLD2 Missense_Mutation p.F178L 0.18 tolerated(1) probably_damaging(0.934) TCGA-75-5126-01 17 5085607 5085607 C A ZNF594 Nonsense_Mutation p.E649* 0.16 TCGA-75-5126-01 17 53797959 53797959 G T TMEM100 3'UTR 0.13 TCGA-75-5126-01 17 56247937 56247937 T A OR4D2 Silent p.V307V 0.14 TCGA-75-5126-01 17 56393883 56393883 C A BZRAP1 Missense_Mutation p.V631L 0.20 deleterious(0.01) benign(0.041) TCGA-75-5126-01 17 58524943 58524943 C T APPBP2 Silent p.%3D 0.15 TCGA-75-5126-01 17 58524966 58524966 C G APPBP2 Missense_Mutation p.Q578H 0.10 deleterious_low_confidence(0.01) benign(0.271) TCGA-75-5126-01 17 63898446 63898446 C A CEP112 Nonsense_Mutation p.E663* 0.15 TCGA-75-5126-01 17 67148553 67148553 C A ABCA10 Missense_Mutation p.E1402D 0.15 deleterious(0) probably_damaging(0.99) TCGA-75-5126-01 17 71223366 71223366 G T FAM104A Missense_Mutation p.L87I 0.10 tolerated(0.26) benign(0.012) TCGA-75-5126-01 17 7138841 7138841 G A PHF23 3'UTR 0.17 TCGA-75-5126-01 17 7321156 7321156 G C NLGN2 3'UTR 0.56 TCGA-75-5126-01 17 74286109 74286109 C G QRICH2 Missense_Mutation p.K1088N 0.15 deleterious(0) probably_damaging(0.989) TCGA-75-5126-01 17 7736529 7736529 G A DNAH2 Silent p.K4373K 0.12 TCGA-75-5126-01 17 7797526 7797526 G T CHD3 Missense_Mutation p.G399C 0.26 probably_damaging(0.965) TCGA-75-5126-01 17 78022479 78022479 G T CCDC40 Missense_Mutation p.M258I 0.14 tolerated(0.2) benign(0) TCGA-75-5126-01 17 79872368 79872368 C A SIRT7 Silent p.R206R 0.10 TCGA-75-5126-01 18 13884563 13884563 A G MC2R 3'UTR 0.31 TCGA-75-5126-01 18 22057268 22057268 G T HRH4 Silent p.L305L 0.24 TCGA-75-5126-01 18 22057269 22057269 G T HRH4 Missense_Mutation p.A306S 0.24 deleterious(0.01) possibly_damaging(0.887) TCGA-75-5126-01 18 34335151 34335151 C G FHOD3 Missense_Mutation p.F1259L 0.33 deleterious(0.02) probably_damaging(0.976) TCGA-75-5126-01 18 34378463 34378463 C A TPGS2 Silent p.L202L 0.25 TCGA-75-5126-01 18 51729159 51729159 C A MBD2 Intron 0.33 TCGA-75-5126-01 18 54358458 54358458 C T WDR7 Silent p.A243A 0.17 TCGA-75-5126-01 18 59221445 59221445 C A CDH20 Silent p.S641S 0.19 TCGA-75-5126-01 18 627251 627251 C T CLUL1 Missense_Mutation p.S193F 0.20 tolerated(0.52) benign(0.016) TCGA-75-5126-01 18 63489352 63489352 G C CDH7 Missense_Mutation p.E221Q 0.24 deleterious(0) probably_damaging(0.994) TCGA-75-5126-01 18 8785985 8785985 G T SOGA2 Nonsense_Mutation p.E595* 0.29 TCGA-75-5126-01 19 10625652 10625652 G A S1PR5 Silent p.S12S 0.10 TCGA-75-5126-01 19 12060182 12060182 G A ZNF700 Missense_Mutation p.C448Y 0.09 deleterious(0) probably_damaging(1) TCGA-75-5126-01 19 12429757 12429757 C A ZNF563 Missense_Mutation p.G361V 0.15 deleterious(0.01) possibly_damaging(0.904) TCGA-75-5126-01 19 13335494 13335494 G C CACNA1A Missense_Mutation p.I1906M 0.22 benign(0.1) TCGA-75-5126-01 19 1495329 1495329 G T REEP6 Missense_Mutation p.G51V 0.22 deleterious(0) probably_damaging(0.976) TCGA-75-5126-01 19 15579494 15579494 G T PGLYRP2 Missense_Mutation p.P571T 0.15 tolerated_low_confidence(0.27) benign(0.08) TCGA-75-5126-01 19 18709709 18709709 G A CRLF1 Missense_Mutation p.P134S 0.11 deleterious(0.02) possibly_damaging(0.674) TCGA-75-5126-01 19 18897083 18897083 A T COMP Missense_Mutation p.F425I 0.12 tolerated(0.08) benign(0.064) TCGA-75-5126-01 19 21720247 21720247 G T ZNF429 Silent p.R464R 0.11 TCGA-75-5126-01 19 22193724 22193724 C A ZNF208 5'UTR 0.27 TCGA-75-5126-01 19 22780195 22780195 C T RN7SL860P 5'Flank 0.28 TCGA-75-5126-01 19 31769101 31769101 G T TSHZ3 Missense_Mutation p.A533E 0.16 deleterious(0) probably_damaging(0.998) TCGA-75-5126-01 19 37130807 37130807 C A ZNF461 Missense_Mutation p.G147V 0.14 tolerated(0.25) benign(0.018) TCGA-75-5126-01 19 37309614 37309614 G C ZNF790 Missense_Mutation p.I544M 0.14 tolerated(0.25) benign(0.365) TCGA-75-5126-01 19 38931492 38931492 T C RYR1 Silent p.T51T 0.09 TCGA-75-5126-01 19 38976798 38976798 G C RYR1 Missense_Mutation p.E1835Q 0.11 probably_damaging(0.982) TCGA-75-5126-01 19 41211335 41211335 C G ADCK4 Missense_Mutation p.D129H 0.12 deleterious(0.02) benign(0.289) TCGA-75-5126-01 19 41822729 41822729 C T CCDC97 Nonsense_Mutation p.R163* 0.21 TCGA-75-5126-01 19 42861611 42861611 G A MEGF8 Missense_Mutation p.R1562Q 0.15 deleterious(0.01) possibly_damaging(0.787) TCGA-75-5126-01 19 43269757 43269757 C A PSG8 5'UTR 0.13 TCGA-75-5126-01 19 43697491 43697491 G - PSG4 3'UTR 0.10 TCGA-75-5126-01 19 44223193 44223193 G A IRGC Silent p.K161K 0.25 TCGA-75-5126-01 19 45389236 45389236 G A PVRL2 Silent p.A413A 0.06 TCGA-75-5126-01 19 46352129 46352129 C T SYMPK Missense_Mutation p.R102Q 0.24 tolerated(0.22) benign(0.003) TCGA-75-5126-01 19 46355610 46355610 C T SYMPK Missense_Mutation p.E87K 0.25 deleterious(0.01) probably_damaging(0.956) TCGA-75-5126-01 19 46355787 46355787 C T SYMPK Missense_Mutation p.E60K 0.30 deleterious(0) probably_damaging(0.998) TCGA-75-5126-01 19 47706943 47706943 G T SAE1 Missense_Mutation p.E298D 0.21 deleterious(0.02) benign(0.401) TCGA-75-5126-01 19 48892941 48892941 T C KDELR1 Missense_Mutation p.T74A 0.25 tolerated(0.05) possibly_damaging(0.511) TCGA-75-5126-01 19 49938490 49938490 A G SLC17A7 Silent p.F123F 0.15 TCGA-75-5126-01 19 51499412 51499412 C A KLK8 Missense_Mutation p.G274V 0.15 deleterious(0) probably_damaging(1) TCGA-75-5126-01 19 51629379 51629379 G A SIGLEC9 Missense_Mutation p.G248S 0.05 tolerated(0.51) benign(0.065) TCGA-75-5126-01 19 54783404 54783404 C A LILRB2 Missense_Mutation p.G152C 0.18 deleterious(0) probably_damaging(0.975) TCGA-75-5126-01 19 56244354 56244354 T C NLRP9 Silent p.Q281Q 0.17 TCGA-75-5126-01 19 56424211 56424211 C T NLRP13 Silent p.E324E 0.15 TCGA-75-5126-01 19 56572759 56572759 C A NLRP5 Intron 0.13 TCGA-75-5126-01 19 58216288 58216288 A T ZNF154 Silent p.L31L 0.16 TCGA-75-5126-01 19 58862863 58862863 C A A1BG Silent p.A268A 0.23 TCGA-75-5126-01 19 6222228 6222228 C A MLLT1 Silent p.G338G 0.13 TCGA-75-5126-01 19 6754663 6754663 G C SH2D3A Missense_Mutation p.P354R 0.07 deleterious(0) probably_damaging(0.947) TCGA-75-5126-01 19 6903852 6903852 C T EMR1 Silent p.I231I 0.20 TCGA-75-5126-01 19 8997117 8997117 C A MUC16 Splice_Site p.X13693_splice 0.14 TCGA-75-5126-01 19 8997118 8997118 C A MUC16 Missense_Mutation p.R13693M 0.14 probably_damaging(0.999) TCGA-75-5126-01 19 9060907 9060907 C A MUC16 Missense_Mutation p.V8847L 0.09 unknown(0) TCGA-75-5126-01 19 9070227 9070227 G C MUC16 Nonsense_Mutation p.S5740* 0.10 TCGA-75-5126-01 19 9074029 9074029 C T MUC16 Missense_Mutation p.G4473R 0.16 unknown(0) TCGA-75-5126-01 19 9204347 9204347 C A OR1M1 Missense_Mutation p.L143M 0.12 deleterious(0.01) probably_damaging(0.933) TCGA-75-5126-01 1 100732078 100732078 A T RTCA Splice_Site p.X16_splice 0.13 TCGA-75-5126-01 1 101704852 101704852 G T S1PR1 Missense_Mutation p.L104F 0.12 tolerated(0.06) benign(0.163) TCGA-75-5126-01 1 108185330 108185330 G T VAV3 Missense_Mutation p.P609T 0.10 deleterious(0) possibly_damaging(0.861) TCGA-75-5126-01 1 108185332 108185332 G C VAV3 Missense_Mutation p.P608R 0.10 tolerated(0.07) benign(0.063) TCGA-75-5126-01 1 110214125 110214125 G A GSTM2 Missense_Mutation p.V163I 0.15 tolerated(0.48) benign(0.014) TCGA-75-5126-01 1 110256121 110256121 G T GSTM5 Missense_Mutation p.D65Y 0.14 deleterious(0) probably_damaging(1) TCGA-75-5126-01 1 11182049 11182049 C G MTOR Missense_Mutation p.R2266P 0.20 deleterious(0) probably_damaging(0.998) TCGA-75-5126-01 1 117078851 117078851 C G CD58 Splice_Site p.X122_splice 0.27 TCGA-75-5126-01 1 118501533 118501533 G T WDR3 Missense_Mutation p.R861S 0.13 deleterious(0) possibly_damaging(0.886) TCGA-75-5126-01 1 12887653 12887653 G A PRAMEF11 Silent p.V68V 0.10 TCGA-75-5126-01 1 152082950 152082950 T C TCHH Missense_Mutation p.R915G 0.15 unknown(0) TCGA-75-5126-01 1 152284173 152284173 G T FLG Missense_Mutation p.H1063Q 0.10 probably_damaging(0.952) TCGA-75-5126-01 1 152748972 152748972 C T LCE1F Missense_Mutation p.S42F 0.06 deleterious_low_confidence(0.01) unknown(0) TCGA-75-5126-01 1 153270489 153270489 C T PGLYRP3 Silent p.L323L 0.17 TCGA-75-5126-01 1 154295719 154295719 G T AQP10 Missense_Mutation p.A125S 0.11 deleterious(0.01) probably_damaging(1) TCGA-75-5126-01 1 156704034 156704034 G C RRNAD1 Silent p.L290L 0.09 TCGA-75-5126-01 1 156713537 156713537 C T HDGF Missense_Mutation p.R224Q 0.24 tolerated_low_confidence(0.63) benign(0.01) TCGA-75-5126-01 1 158548836 158548836 G T OR10X1 Missense_Mutation p.T285K 0.12 tolerated(0.77) possibly_damaging(0.72) TCGA-75-5126-01 1 158735635 158735635 C A OR6N1 Missense_Mutation p.V280L 0.05 deleterious(0.05) benign(0.118) TCGA-75-5126-01 1 159169596 159169596 C T CADM3 Silent p.I370I 0.10 TCGA-75-5126-01 1 161180475 161180475 G T NDUFS2 Missense_Mutation p.G321C 0.15 deleterious(0) probably_damaging(0.999) TCGA-75-5126-01 1 161771911 161771911 A C ATF6 Missense_Mutation p.Q253P 0.11 deleterious(0.03) benign(0.265) TCGA-75-5126-01 1 16268907 16268907 C T ZBTB17 Missense_Mutation p.V683M 0.12 deleterious(0.01) probably_damaging(0.986) TCGA-75-5126-01 1 177001649 177001649 G T ASTN1 Missense_Mutation p.R270S 0.07 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-75-5126-01 1 177249713 177249713 C T BRINP2 Silent p.A467A 0.10 TCGA-75-5126-01 1 181726077 181726077 G T CACNA1E Missense_Mutation p.V1382L 0.10 deleterious(0) benign(0.299) TCGA-75-5126-01 1 185153463 185153463 A G SWT1 Silent p.T409T 0.10 TCGA-75-5126-01 1 186034450 186034450 G T HMCN1 Missense_Mutation p.G2532C 0.24 probably_damaging(1) TCGA-75-5126-01 1 186141245 186141245 G T HMCN1 Nonsense_Mutation p.E5266* 0.05 TCGA-75-5126-01 1 18808542 18808542 C T KLHDC7A Missense_Mutation p.S356F 0.12 tolerated(0.06) possibly_damaging(0.646) TCGA-75-5126-01 1 190067370 190067370 C A BRINP3 Missense_Mutation p.Q693H 0.10 deleterious(0.01) probably_damaging(0.993) TCGA-75-5126-01 1 190195291 190195291 C A BRINP3 Missense_Mutation p.M294I 0.15 tolerated(0.19) benign(0.003) TCGA-75-5126-01 1 197072203 197072203 T C ASPM Missense_Mutation p.K2060E 0.07 deleterious(0.02) possibly_damaging(0.648) TCGA-75-5126-01 1 198668740 198668740 C T PTPRC Nonsense_Mutation p.Q116* 0.09 TCGA-75-5126-01 1 215963401 215963401 C G USH2A Missense_Mutation p.K3394N 0.17 possibly_damaging(0.536) TCGA-75-5126-01 1 220970054 220970054 G T MARC1 Silent p.L173L 0.25 TCGA-75-5126-01 1 226349305 226349305 C G ACBD3 Missense_Mutation p.E219Q 0.32 tolerated(0.13) benign(0.007) TCGA-75-5126-01 1 231700291 231700291 G A TSNAX Silent p.Q171Q 0.06 TCGA-75-5126-01 1 234584263 234584263 G C TARBP1 Missense_Mutation p.L642V 0.14 deleterious(0) benign(0.399) TCGA-75-5126-01 1 238053401 238053401 G C ZP4 Missense_Mutation p.S84C 0.12 deleterious(0) probably_damaging(0.971) TCGA-75-5126-01 1 240072435 240072435 C A CHRM3 Missense_Mutation p.Q562K 0.08 tolerated(0.08) benign(0.025) TCGA-75-5126-01 1 247588857 247588857 G C NLRP3 Silent p.V704V 0.09 TCGA-75-5126-01 1 247588913 247588913 C G NLRP3 Intron 0.13 TCGA-75-5126-01 1 247902780 247902780 C T OR14K1 Silent p.Y288Y 0.07 TCGA-75-5126-01 1 248343636 248343636 G A OR2M2 Missense_Mutation p.V117I 0.12 tolerated(0.52) benign(0.019) TCGA-75-5126-01 1 248458109 248458109 T A OR2T12 Missense_Mutation p.M258L 0.08 tolerated(0.13) benign(0.06) TCGA-75-5126-01 1 248756151 248756151 C A OR2T10 Missense_Mutation p.V307L 0.09 tolerated(0.72) benign(0.003) TCGA-75-5126-01 1 26581979 26581979 G C CEP85 Missense_Mutation p.A176P 0.06 tolerated(0.21) benign(0.265) TCGA-75-5126-01 1 28862433 28862433 G T RCC1 Missense_Mutation p.G269C 0.11 deleterious(0) benign(0.287) TCGA-75-5126-01 1 36558117 36558117 G C ADPRHL2 Missense_Mutation p.E266Q 0.09 tolerated(0.22) benign(0.011) TCGA-75-5126-01 1 36640515 36640515 C T MAP7D1 Silent p.S252S 0.09 TCGA-75-5126-01 1 41486213 41486213 G C SLFNL1 Silent p.L40L 0.13 TCGA-75-5126-01 1 43119529 43119529 C T CCDC30 Nonsense_Mutation p.Q728* 0.07 TCGA-75-5126-01 1 43119551 43119551 C G CCDC30 Nonsense_Mutation p.S735* 0.10 TCGA-75-5126-01 1 43215927 43215927 C T LEPRE1 Silent p.E550E 0.24 TCGA-75-5126-01 1 51425436 51425436 C T FAF1 Intron 0.23 TCGA-75-5126-01 1 53122714 53122714 C T FAM159A 3'UTR 0.06 TCGA-75-5126-01 1 62237296 62237296 A G INADL Missense_Mutation p.T240A 0.09 tolerated(0.06) benign(0.023) TCGA-75-5126-01 1 65864515 65864515 G A DNAJC6 Silent p.V686V 0.06 TCGA-75-5126-01 1 67147924 67147924 C A SGIP1 Missense_Mutation p.T396K 0.13 tolerated_low_confidence(0.2) benign(0.04) TCGA-75-5126-01 1 70654875 70654875 C A LRRC40 Missense_Mutation p.W78L 0.07 deleterious(0) possibly_damaging(0.843) TCGA-75-5126-01 1 78098439 78098439 C A ZZZ3 Missense_Mutation p.A201S 0.17 tolerated_low_confidence(0.26) benign(0.006) TCGA-75-5126-01 1 87040315 87040315 C G CLCA4 Silent p.L520L 0.18 TCGA-75-5126-01 1 91182622 91182622 C G BARHL2 Missense_Mutation p.R44T 0.05 deleterious_low_confidence(0.01) probably_damaging(0.966) TCGA-75-5126-01 1 91742270 91742270 A G HFM1 Missense_Mutation p.I1168T 0.19 tolerated(0.5) benign(0.001) TCGA-75-5126-01 1 91967261 91967261 C G CDC7 5'UTR 0.10 TCGA-75-5126-01 1 94982646 94982646 C G ABCD3 Missense_Mutation p.F647L 0.20 deleterious(0) possibly_damaging(0.725) TCGA-75-5126-01 20 23420937 23420937 G T CSTL1 Silent p.L11L 0.18 TCGA-75-5126-01 20 2377157 2377157 G T TGM6 Missense_Mutation p.D144Y 0.12 deleterious(0.01) possibly_damaging(0.886) TCGA-75-5126-01 20 29976852 29976852 C T DEFB119 Missense_Mutation p.M81I 0.17 tolerated_low_confidence(0.11) benign(0) TCGA-75-5126-01 20 34022057 34022057 T G GDF5 Missense_Mutation p.T386P 0.10 deleterious(0.03) benign(0.059) TCGA-75-5126-01 20 3655286 3655286 G T ADAM33 Silent p.P155P 0.10 TCGA-75-5126-01 20 36869444 36869447 GTGG - KIAA1755 Frame_Shift_Del p.H363Tfs*11 0.11 TCGA-75-5126-01 20 37580296 37580296 C T FAM83D Silent p.I327I 0.10 TCGA-75-5126-01 20 43559182 43559182 G C PABPC1L Missense_Mutation p.E352Q 0.14 deleterious(0) probably_damaging(1) TCGA-75-5126-01 20 44803585 44803585 A T CDH22 Missense_Mutation p.Y683N 0.08 deleterious(0) possibly_damaging(0.899) TCGA-75-5126-01 20 47265957 47265957 C A PREX1 Silent p.R1062R 0.09 TCGA-75-5126-01 20 49209638 49209638 G A FAM65C Missense_Mutation p.H766Y 0.12 tolerated(0.65) benign(0.013) TCGA-75-5126-01 20 51872567 51872567 A T TSHZ2 Missense_Mutation p.Q857L 0.14 deleterious(0) probably_damaging(0.989) TCGA-75-5126-01 20 57599127 57599127 G A TUBB1 Silent p.L215L 0.09 TCGA-75-5126-01 20 5843764 5843764 G T C20orf196 Missense_Mutation p.E91D 0.15 tolerated(0.05) benign(0.056) TCGA-75-5126-01 20 60511823 60511823 C A CDH4 Missense_Mutation p.T858K 0.17 deleterious(0) probably_damaging(0.996) TCGA-75-5126-01 20 60889909 60889909 G A LAMA5 Silent p.A2714A 0.10 TCGA-75-5126-01 20 61468561 61468561 G A COL9A3 Missense_Mutation p.R577Q 0.10 deleterious(0.03) probably_damaging(0.996) TCGA-75-5126-01 20 62038676 62038676 C A KCNQ2 Missense_Mutation p.R647L 0.16 deleterious(0.05) probably_damaging(0.99) TCGA-75-5126-01 20 744288 744288 G A SLC52A3 Silent p.F309F 0.10 TCGA-75-5126-01 20 8782714 8782714 C G PLCB1 Intron 0.14 TCGA-75-5126-01 20 9561435 9561435 C - PAK7 Frame_Shift_Del p.G116Vfs*57 0.17 TCGA-75-5126-01 21 19190600 19190600 C G C21orf91 Missense_Mutation p.L12F 0.06 deleterious(0) probably_damaging(0.992) TCGA-75-5126-01 21 31973475 31973475 C T KRTAP22-1 Silent p.G12G 0.05 TCGA-75-5126-01 21 31986066 31986066 G C KRTAP6-1 Missense_Mutation p.S53C 0.08 unknown(0) TCGA-75-5126-01 21 32492988 32492988 G A TIAM1 Nonsense_Mutation p.Q1492* 0.12 TCGA-75-5126-01 21 37661499 37661499 T C DOPEY2 Silent p.F2170F 0.24 TCGA-75-5126-01 21 41539175 41539175 T G DSCAM Silent p.I996I 0.08 TCGA-75-5126-01 21 41684035 41684035 C A DSCAM Nonsense_Mutation p.E679* 0.06 TCGA-75-5126-01 21 41725607 41725607 T A DSCAM Missense_Mutation p.Q240L 0.16 tolerated(0.23) benign(0.005) TCGA-75-5126-01 21 42064747 42064747 G A DSCAM Missense_Mutation p.S166L 0.13 tolerated(0.51) benign(0.033) TCGA-75-5126-01 21 46000336 46000336 G A KRTAP10-5 Silent p.V40V 0.15 TCGA-75-5126-01 21 46011972 46011972 C - KRTAP10-6 Frame_Shift_Del p.D132Ifs*48 0.09 TCGA-75-5126-01 21 47546018 47546018 C A COL6A2 Missense_Mutation p.F763L 0.15 deleterious(0) benign(0.259) TCGA-75-5126-01 22 19776223 19776223 G A GNB1L 3'UTR 0.06 TCGA-75-5126-01 22 23040618 23040618 C A IGLV2-23 Silent p.A22A 0.08 TCGA-75-5126-01 22 23040815 23040815 C G IGLV2-23 Missense_Mutation p.S88C 0.12 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-75-5126-01 22 23162091 23162091 C A IGLV3-9 Missense_Mutation p.P62T 0.10 deleterious(0) probably_damaging(0.995) TCGA-75-5126-01 22 32833771 32833771 C G BPIFC Missense_Mutation p.E241D 0.09 tolerated(0.06) possibly_damaging(0.853) TCGA-75-5126-01 22 35661015 35661015 C T HMGXB4 Nonsense_Mutation p.Q212* 0.07 TCGA-75-5126-01 22 41282319 41282319 G T XPNPEP3 Nonsense_Mutation p.E198* 0.10 TCGA-75-5126-01 22 41605590 41605590 G C L3MBTL2 Intron 0.08 TCGA-75-5126-01 22 41926752 41926752 G A POLR3H Missense_Mutation p.S167L 0.11 tolerated(0.29) benign(0.006) TCGA-75-5126-01 22 50573048 50573048 A T MOV10L1 Missense_Mutation p.T687S 0.08 tolerated(0.47) benign(0.007) TCGA-75-5126-01 22 50724456 50724456 G T PLXNB2 Nonsense_Mutation p.S650* 0.16 TCGA-75-5126-01 22 51065369 51065369 G C ARSA Missense_Mutation p.P193A 0.05 deleterious(0.01) probably_damaging(0.979) TCGA-75-5126-01 2 10136084 10136090 AAGAACC - GRHL1 Frame_Shift_Del p.E527Rfs*18 0.16 TCGA-75-5126-01 2 10263908 10263908 G A RRM2 Missense_Mutation p.E182K 0.09 tolerated_low_confidence(0.06) benign(0.037) TCGA-75-5126-01 2 10264847 10264847 G C RRM2 Missense_Mutation p.E207Q 0.10 tolerated_low_confidence(0.06) probably_damaging(0.956) TCGA-75-5126-01 2 103090357 103090357 G T SLC9A4 Missense_Mutation p.A47S 0.13 tolerated(0.19) benign(0.013) TCGA-75-5126-01 2 107460128 107460128 G T ST6GAL2 Silent p.S102S 0.18 TCGA-75-5126-01 2 109384690 109384690 G T RANBP2 Missense_Mutation p.Q2565H 0.11 tolerated(0.07) possibly_damaging(0.758) TCGA-75-5126-01 2 113305083 113305083 A T POLR1B Missense_Mutation p.K144M 0.15 deleterious(0.02) possibly_damaging(0.676) TCGA-75-5126-01 2 121995289 121995289 G T TFCP2L1 Missense_Mutation p.L305M 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-75-5126-01 2 128393797 128393797 C A MYO7B Silent p.A1981A 0.11 TCGA-75-5126-01 2 130832523 130832523 G T POTEF Missense_Mutation p.S841Y 0.11 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-75-5126-01 2 131487629 131487629 C A GPR148 Missense_Mutation p.A302E 0.15 deleterious(0.01) probably_damaging(0.971) TCGA-75-5126-01 2 132237812 132237812 G A TUBA3D Silent p.V182V 0.07 TCGA-75-5126-01 2 133542855 133542855 C A NCKAP5 Missense_Mutation p.S510I 0.12 deleterious(0) probably_damaging(0.999) TCGA-75-5126-01 2 135744683 135744683 A G MAP3K19 Silent p.L587L 0.12 TCGA-75-5126-01 2 141027886 141027886 C G LRP1B Missense_Mutation p.C4391S 0.09 benign(0.152) TCGA-75-5126-01 2 141108599 141108599 C G LRP1B Missense_Mutation p.D3887H 0.12 possibly_damaging(0.861) TCGA-75-5126-01 2 149247498 149247498 G T MBD5 Nonsense_Mutation p.E1200* 0.05 TCGA-75-5126-01 2 166179847 166179847 G A SCN2A Missense_Mutation p.G618E 0.10 deleterious(0.04) possibly_damaging(0.786) TCGA-75-5126-01 2 166201146 166201146 G C SCN2A Missense_Mutation p.G882R 0.11 deleterious(0.03) possibly_damaging(0.519) TCGA-75-5126-01 2 166535349 166535349 G T CSRNP3 Nonsense_Mutation p.E282* 0.11 TCGA-75-5126-01 2 166900551 166900551 C T SCN1A Silent p.L557L 0.12 TCGA-75-5126-01 2 168102966 168102966 C A XIRP2 Missense_Mutation p.N1688K 0.11 benign(0.073) TCGA-75-5126-01 2 179395922 179395931 GACGGTCATG - TTN Frame_Shift_Del p.M35138Tfs*20 0.18 TCGA-75-5126-01 2 179404336 179404336 G T TTN Missense_Mutation p.P32819H 0.12 TCGA-75-5126-01 2 179422925 179422925 G T TTN Missense_Mutation p.H29052Q 0.10 TCGA-75-5126-01 2 179448526 179448526 C T TTN Missense_Mutation p.E21795K 0.20 TCGA-75-5126-01 2 179459287 179459287 C T TTN Missense_Mutation p.G19312S 0.15 TCGA-75-5126-01 2 182339987 182339987 G T ITGA4 Silent p.L176L 0.14 TCGA-75-5126-01 2 185801020 185801020 C A ZNF804A Silent p.V299V 0.13 TCGA-75-5126-01 2 185803016 185803016 C A ZNF804A Missense_Mutation p.Q965K 0.16 tolerated(0.11) possibly_damaging(0.857) TCGA-75-5126-01 2 187605101 187605101 T A FAM171B Missense_Mutation p.Y129N 0.15 deleterious(0) probably_damaging(0.999) TCGA-75-5126-01 2 1926884 1926884 G A MYT1L Silent p.A219A 0.14 TCGA-75-5126-01 2 197008376 197008376 A T STK17B Missense_Mutation p.L172H 0.10 tolerated(0.17) probably_damaging(0.999) TCGA-75-5126-01 2 197872649 197872649 T A ANKRD44 Splice_Site p.X646_splice 0.12 TCGA-75-5126-01 2 200137156 200137156 G C SATB2 Missense_Mutation p.I660M 0.06 deleterious(0.01) probably_damaging(0.949) TCGA-75-5126-01 2 201853122 201853122 G C FAM126B Nonsense_Mutation p.S285* 0.08 TCGA-75-5126-01 2 202700488 202700488 T A CDK15 Splice_Site p.X284_splice 0.19 TCGA-75-5126-01 2 203332383 203332383 A G BMPR2 Missense_Mutation p.N130S 0.16 tolerated(0.77) possibly_damaging(0.472) TCGA-75-5126-01 2 209007476 209007476 G A CRYGB Silent p.P138P 0.14 TCGA-75-5126-01 2 209308240 209308240 C A PTH2R Missense_Mutation p.T226N 0.09 tolerated(0.06) benign(0.102) TCGA-75-5126-01 2 210558419 210558419 G A MAP2 Missense_Mutation p.D509N 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.597) TCGA-75-5126-01 2 211464141 211464141 G T CPS1 Missense_Mutation p.V475F 0.19 deleterious(0) probably_damaging(0.999) TCGA-75-5126-01 2 214215336 214215336 G T SPAG16 Silent p.L243L 0.10 TCGA-75-5126-01 2 215595194 215595194 C A BARD1 Nonsense_Mutation p.E648* 0.14 TCGA-75-5126-01 2 219528862 219528862 C T RNF25 Missense_Mutation p.E400K 0.11 tolerated(0.07) benign(0.014) TCGA-75-5126-01 2 219746998 219746998 C T WNT10A Missense_Mutation p.R77C 0.15 deleterious(0) probably_damaging(0.998) TCGA-75-5126-01 2 220338272 220338272 C G SPEG Missense_Mutation p.I1398M 0.12 possibly_damaging(0.759) TCGA-75-5126-01 2 224763777 224763777 C A WDFY1 Missense_Mutation p.D166Y 0.13 deleterious(0.01) possibly_damaging(0.466) TCGA-75-5126-01 2 226446722 226446722 C A NYAP2 Silent p.R197R 0.10 TCGA-75-5126-01 2 230661452 230661452 G C TRIP12 Nonsense_Mutation p.S1149* 0.16 TCGA-75-5126-01 2 230661474 230661475 - A TRIP12 Frame_Shift_Ins p.V1142Cfs*5 0.12 TCGA-75-5126-01 2 234878914 234878914 C A TRPM8 Silent p.S733S 0.12 TCGA-75-5126-01 2 236957737 236957737 C T AGAP1 Silent p.L642L 0.06 TCGA-75-5126-01 2 241496731 241496731 G - ANKMY1 5'UTR 0.09 TCGA-75-5126-01 2 24260771 24260771 C T C2orf44 Missense_Mutation p.D532N 0.08 tolerated(0.3) benign(0.013) TCGA-75-5126-01 2 27360638 27360638 C A C2orf53 Missense_Mutation p.G187V 0.08 tolerated(0.18) possibly_damaging(0.663) TCGA-75-5126-01 2 3217925 3217925 C A TSSC1 Missense_Mutation p.A171S 0.08 tolerated(0.24) probably_damaging(0.935) TCGA-75-5126-01 2 32640306 32640306 G A BIRC6 Missense_Mutation p.M649I 0.09 benign(0.009) TCGA-75-5126-01 2 37096801 37096801 G C STRN Silent p.G465G 0.10 TCGA-75-5126-01 2 40655828 40655828 A C SLC8A1 Missense_Mutation p.I531M 0.13 deleterious(0) probably_damaging(0.999) TCGA-75-5126-01 2 45233412 45233412 G A SIX2 Missense_Mutation p.P258L 0.13 tolerated_low_confidence(0.08) benign(0) TCGA-75-5126-01 2 47601119 47601119 G A EPCAM Silent p.V119V 0.12 TCGA-75-5126-01 2 47690262 47690262 G T MSH2 Missense_Mutation p.Q493H 0.15 deleterious(0.05) possibly_damaging(0.863) TCGA-75-5126-01 2 62067223 62067223 G A FAM161A Missense_Mutation p.R306W 0.12 deleterious(0) probably_damaging(0.996) TCGA-75-5126-01 2 68607999 68607999 A T PLEK Missense_Mutation p.R115W 0.14 deleterious(0) probably_damaging(1) TCGA-75-5126-01 2 71650945 71650945 C G ZNF638 Missense_Mutation p.A1434G 0.10 tolerated(0.08) benign(0.285) TCGA-75-5126-01 2 74043355 74043355 C A C2orf78 Missense_Mutation p.P669T 0.24 tolerated(0.12) benign(0.056) TCGA-75-5126-01 2 89399584 89399584 C T IGKV1-16 Missense_Mutation p.R40K 0.12 tolerated(0.13) benign(0.011) TCGA-75-5126-01 2 97031791 97031791 C T NCAPH Nonsense_Mutation p.Q626* 0.19 TCGA-75-5126-01 2 98709612 98709612 G T VWA3B Missense_Mutation p.E19D 0.11 deleterious(0.04) possibly_damaging(0.601) TCGA-75-5126-01 3 101051736 101051736 T C SENP7 Intron 0.11 TCGA-75-5126-01 3 10370725 10370725 C T ATP2B2 Missense_Mutation p.A1169T 0.12 tolerated_low_confidence(1) benign(0.003) TCGA-75-5126-01 3 10430011 10430011 A T ATP2B2 Missense_Mutation p.F286Y 0.15 tolerated(0.06) benign(0.024) TCGA-75-5126-01 3 10885924 10885924 G A SLC6A11 Missense_Mutation p.G217R 0.15 deleterious(0) probably_damaging(1) TCGA-75-5126-01 3 109046777 109046777 C T DPPA4 3'UTR 0.14 TCGA-75-5126-01 3 109050827 109050827 T A DPPA4 Missense_Mutation p.K77M 0.20 deleterious(0) probably_damaging(0.957) TCGA-75-5126-01 3 113128135 113128135 A G WDR52 Silent p.F236F 0.15 TCGA-75-5126-01 3 113850108 113850108 G T DRD3 Missense_Mutation p.P288H 0.11 deleterious(0.03) possibly_damaging(0.712) TCGA-75-5126-01 3 121305010 121305010 G A ARGFX Missense_Mutation p.V171M 0.13 tolerated(0.26) benign(0.002) TCGA-75-5126-01 3 121351227 121351227 C T HCLS1 Missense_Mutation p.E398K 0.12 deleterious(0) benign(0.002) TCGA-75-5126-01 3 123049786 123049786 G T ADCY5 Missense_Mutation p.D532E 0.10 deleterious(0) probably_damaging(0.985) TCGA-75-5126-01 3 126152008 126152008 C A CCDC37 Silent p.A461A 0.11 TCGA-75-5126-01 3 1262497 1262497 G A CNTN6 Missense_Mutation p.R61K 0.14 tolerated(0.09) possibly_damaging(0.672) TCGA-75-5126-01 3 12858893 12858893 G A CAND2 Missense_Mutation p.S821N 0.07 tolerated(0.33) benign(0.012) TCGA-75-5126-01 3 129284183 129284183 C A PLXND1 Silent p.R1507R 0.12 TCGA-75-5126-01 3 142524944 142524944 T C TRPC1 Missense_Mutation p.M750T 0.12 tolerated(0.5) possibly_damaging(0.835) TCGA-75-5126-01 3 14862391 14862391 G T FGD5 Missense_Mutation p.G605C 0.15 deleterious(0) probably_damaging(1) TCGA-75-5126-01 3 148791111 148791111 T C HLTF Splice_Site p.X177_splice 0.14 TCGA-75-5126-01 3 157820469 157820469 G A SHOX2 Nonsense_Mutation p.Q209* 0.09 TCGA-75-5126-01 3 167016162 167016162 C A ZBBX Nonsense_Mutation p.E604* 0.21 TCGA-75-5126-01 3 167761305 167761305 C G GOLIM4 Missense_Mutation p.E127Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-75-5126-01 3 171395355 171395355 C T PLD1 Splice_Site p.X666_splice 0.12 TCGA-75-5126-01 3 173998675 173998675 C G NLGN1 Nonsense_Mutation p.S685* 0.16 TCGA-75-5126-01 3 179104264 179104264 C T MFN1 Missense_Mutation p.T620I 0.10 tolerated(0.11) benign(0.003) TCGA-75-5126-01 3 179104270 179104270 A G MFN1 Missense_Mutation p.Y622C 0.11 deleterious(0) probably_damaging(0.994) TCGA-75-5126-01 3 179605481 179605481 G T PEX5L Missense_Mutation p.P97Q 0.14 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-75-5126-01 3 180322022 180322022 C T TTC14 Missense_Mutation p.P166S 0.11 deleterious(0.01) probably_damaging(0.974) TCGA-75-5126-01 3 180667013 180667013 A T FXR1 Splice_Site p.X172_splice 0.11 TCGA-75-5126-01 3 184648287 184648287 C G VPS8 Missense_Mutation p.I943M 0.20 tolerated(0.1) benign(0.15) TCGA-75-5126-01 3 195400791 195400791 A T SDHAP2 RNA 0.15 TCGA-75-5126-01 3 25835776 25835776 G T OXSM Missense_Mutation p.G391W 0.11 deleterious(0) probably_damaging(1) TCGA-75-5126-01 3 37034182 37034182 C G EPM2AIP1 Silent p.L129L 0.08 TCGA-75-5126-01 3 38592196 38592196 G A SCN5A Silent p.Y1889Y 0.13 TCGA-75-5126-01 3 44671009 44671009 G C ZNF197 Missense_Mutation p.Q121H 0.09 tolerated(0.08) probably_damaging(0.996) TCGA-75-5126-01 3 47044463 47044463 C T NBEAL2 Missense_Mutation p.R1826C 0.16 deleterious(0) benign(0.339) TCGA-75-5126-01 3 47161676 47161676 C A SETD2 Nonsense_Mutation p.E1484* 0.17 TCGA-75-5126-01 3 48575973 48575973 C A PFKFB4 Missense_Mutation p.C197F 0.15 probably_damaging(0.991) TCGA-75-5126-01 3 49698291 49698291 C G BSN Missense_Mutation p.L3005V 0.20 unknown(0) TCGA-75-5126-01 3 49735535 49735535 G T RNF123 Missense_Mutation p.G150C 0.14 deleterious(0) probably_damaging(0.998) TCGA-75-5126-01 3 50617272 50617272 C T HEMK1 Intron 0.10 TCGA-75-5126-01 3 7340467 7340467 C G GRM7 Missense_Mutation p.P278R 0.11 tolerated(0.1) benign(0.005) TCGA-75-5126-01 3 73433185 73433185 G T PDZRN3 Missense_Mutation p.D844E 0.20 tolerated(1) benign(0) TCGA-75-5126-01 3 77147352 77147352 G T ROBO2 Missense_Mutation p.M99I 0.25 deleterious(0.03) unknown(0) TCGA-75-5126-01 3 78663903 78663903 C G ROBO1 Missense_Mutation p.V1444L 0.09 tolerated(0.72) benign(0.005) TCGA-75-5126-01 3 85932560 85932560 G T CADM2 Missense_Mutation p.V113F 0.12 deleterious(0) probably_damaging(0.999) TCGA-75-5126-01 3 87018166 87018166 G A VGLL3 Nonsense_Mutation p.Q171* 0.07 TCGA-75-5126-01 3 93761927 93761927 G A ARL13B Silent p.L289L 0.18 TCGA-75-5126-01 3 97167434 97167434 C A EPHA6 Missense_Mutation p.S585Y 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-75-5126-01 3 97167456 97167456 C A EPHA6 Silent p.P592P 0.10 TCGA-75-5126-01 4 1018200 1018200 G T FGFRL1 Missense_Mutation p.V274L 0.27 tolerated(0.05) probably_damaging(0.973) TCGA-75-5126-01 4 109086290 109086290 C G LEF1 Missense_Mutation p.E81D 0.06 tolerated(0.79) benign(0.003) TCGA-75-5126-01 4 109088893 109088893 C T LEF1 Missense_Mutation p.G11S 0.08 tolerated(1) probably_damaging(0.967) TCGA-75-5126-01 4 109745371 109745371 G T COL25A1 Missense_Mutation p.P602T 0.09 deleterious(0.04) possibly_damaging(0.602) TCGA-75-5126-01 4 110743587 110743587 G T GAR1 Missense_Mutation p.G172C 0.11 deleterious_low_confidence(0.01) unknown(0) TCGA-75-5126-01 4 110915979 110915979 A G EGF Missense_Mutation p.Y983C 0.14 deleterious(0) probably_damaging(0.999) TCGA-75-5126-01 4 11401184 11401184 G A HS3ST1 Missense_Mutation p.P149L 0.09 deleterious(0) probably_damaging(1) TCGA-75-5126-01 4 126373662 126373662 G T FAT4 Nonsense_Mutation p.E3831* 0.12 TCGA-75-5126-01 4 13338207 13338207 C A HSP90AB2P RNA 0.08 TCGA-75-5126-01 4 134072243 134072243 G T PCDH10 Missense_Mutation p.L316F 0.12 deleterious(0.01) possibly_damaging(0.906) TCGA-75-5126-01 4 134072244 134072244 G T PCDH10 Missense_Mutation p.D317Y 0.13 deleterious(0) probably_damaging(1) TCGA-75-5126-01 4 134084318 134084318 G T PCDH10 Missense_Mutation p.G995V 0.16 deleterious(0.01) benign(0.175) TCGA-75-5126-01 4 155487824 155487824 G T FGB Missense_Mutation p.D164Y 0.14 deleterious(0) possibly_damaging(0.876) TCGA-75-5126-01 4 164061457 164061457 C T NAF1 Missense_Mutation p.G266S 0.11 deleterious(0.05) benign(0.056) TCGA-75-5126-01 4 166964506 166964506 G C TLL1 Missense_Mutation p.E487Q 0.09 tolerated(0.06) possibly_damaging(0.517) TCGA-75-5126-01 4 25669550 25669550 G C SLC34A2 Missense_Mutation p.G191A 0.10 deleterious(0.03) possibly_damaging(0.823) TCGA-75-5126-01 4 3137637 3137637 G T HTT Silent p.V880V 0.10 TCGA-75-5126-01 4 46053639 46053639 C A GABRG1 Silent p.L311L 0.09 TCGA-75-5126-01 4 48553511 48553511 C T FRYL Missense_Mutation p.S1507N 0.18 tolerated(0.47) benign(0.001) TCGA-75-5126-01 4 62812636 62812636 G T LPHN3 Missense_Mutation p.E740D 0.12 tolerated(0.17) possibly_damaging(0.896) TCGA-75-5126-01 4 66356384 66356384 A G EPHA5 Silent p.T371T 0.07 TCGA-75-5126-01 4 68449311 68449311 C G STAP1 Missense_Mutation p.R184G 0.15 deleterious(0) probably_damaging(1) TCGA-75-5126-01 4 68810272 68810272 G T TMPRSS11A Missense_Mutation p.Q73K 0.08 tolerated(0.49) benign(0.2) TCGA-75-5126-01 4 70346314 70346314 C A UGT2B4 3'UTR 0.12 TCGA-75-5126-01 4 72121090 72121090 C T SLC4A4 Missense_Mutation p.S76F 0.11 deleterious(0.01) benign(0.057) TCGA-75-5126-01 4 72121092 72121092 A T SLC4A4 Missense_Mutation p.S77C 0.10 deleterious(0.04) benign(0.013) TCGA-75-5126-01 4 76885364 76885364 T A SDAD1 Missense_Mutation p.I369F 0.14 deleterious(0.01) benign(0.008) TCGA-75-5126-01 4 77022153 77022153 C G ART3 Missense_Mutation p.N306K 0.04 tolerated_low_confidence(0.52) benign(0.001) TCGA-75-5126-01 4 77817765 77817765 T A SOWAHB Missense_Mutation p.K413I 0.11 deleterious(0) possibly_damaging(0.703) TCGA-75-5126-01 4 83381180 83381180 G A ENOPH1 Silent p.V231V 0.11 TCGA-75-5126-01 4 95239050 95239050 A T HPGDS Missense_Mutation p.I67K 0.08 deleterious(0) probably_damaging(0.993) TCGA-75-5126-01 5 109155485 109155485 A G MAN2A1 Missense_Mutation p.D742G 0.17 tolerated(0.42) benign(0.079) TCGA-75-5126-01 5 115152132 115152132 G A CDO1 5'UTR 0.15 TCGA-75-5126-01 5 115783374 115783374 A C SEMA6A Missense_Mutation p.H676Q 0.09 deleterious(0.01) possibly_damaging(0.635) TCGA-75-5126-01 5 121356138 121356138 C A SRFBP1 Missense_Mutation p.N236K 0.12 tolerated(0.91) benign(0) TCGA-75-5126-01 5 126791128 126791128 T C MEGF10 Missense_Mutation p.C1021R 0.18 deleterious(0) probably_damaging(0.997) TCGA-75-5126-01 5 127595411 127595411 G T FBN2 Silent p.I2825I 0.17 TCGA-75-5126-01 5 127648325 127648325 C A FBN2 Splice_Site p.X1627_splice 0.07 TCGA-75-5126-01 5 127681105 127681105 C - FBN2 Frame_Shift_Del p.R1054Pfs*53 0.14 TCGA-75-5126-01 5 127782300 127782300 C G FBN2 Splice_Site p.X276_splice 0.14 TCGA-75-5126-01 5 132569153 132569153 G T FSTL4 Missense_Mutation p.S324Y 0.17 tolerated(1) benign(0.004) TCGA-75-5126-01 5 134303795 134303795 C T PCBD2 3'UTR 0.23 TCGA-75-5126-01 5 137727215 137727215 G C KDM3B Missense_Mutation p.E632Q 0.13 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-75-5126-01 5 138700367 138700367 G T PAIP2 Missense_Mutation p.D85Y 0.13 deleterious(0.01) benign(0.228) TCGA-75-5126-01 5 139192997 139192997 G T PSD2 Missense_Mutation p.D159Y 0.14 deleterious(0) probably_damaging(1) TCGA-75-5126-01 5 140054305 140054305 C T HARS Missense_Mutation p.D473N 0.12 tolerated(0.4) benign(0.005) TCGA-75-5126-01 5 140166214 140166214 G A PCDHA1 Silent p.P113P 0.11 TCGA-75-5126-01 5 140183206 140183206 A T PCDHA3 Intron 0.20 TCGA-75-5126-01 5 140187260 140187260 G T PCDHA4 Missense_Mutation p.G163V 0.20 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-75-5126-01 5 140207688 140207688 C A PCDHA6 Silent p.T4T 0.15 TCGA-75-5126-01 5 140209902 140209902 C A PCDHA6 Silent p.S742S 0.20 TCGA-75-5126-01 5 140229524 140229524 G C PCDHA9 Missense_Mutation p.A482P 0.15 tolerated_low_confidence(0.28) probably_damaging(0.991) TCGA-75-5126-01 5 140433275 140433275 G A PCDHB1 Silent p.L740L 0.15 TCGA-75-5126-01 5 140503371 140503371 G T PCDHB4 Missense_Mutation p.Q597H 0.17 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-75-5126-01 5 140580428 140580428 C G PCDHB11 Missense_Mutation p.P361A 0.13 deleterious_low_confidence(0.05) benign(0.248) TCGA-75-5126-01 5 140580429 140580429 C A PCDHB11 Missense_Mutation p.P361Q 0.12 tolerated_low_confidence(0.05) possibly_damaging(0.786) TCGA-75-5126-01 5 140720491 140720491 G T PCDHGA2 Missense_Mutation p.Q651H 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.512) TCGA-75-5126-01 5 140754602 140754602 G T PCDHGA6 Missense_Mutation p.G318C 0.18 deleterious_low_confidence(0) possibly_damaging(0.796) TCGA-75-5126-01 5 140755009 140755009 C G PCDHGA6 Silent p.P453P 0.14 TCGA-75-5126-01 5 140764324 140764324 G T PCDHGA7 Missense_Mutation p.G620W 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-75-5126-01 5 148406269 148406269 C T SH3TC2 Silent p.V973V 0.04 TCGA-75-5126-01 5 149678006 149678006 G A ARSI Missense_Mutation p.R161C 0.13 deleterious(0.01) benign(0.117) TCGA-75-5126-01 5 149826406 149826406 G A RPS14 Silent p.I90I 0.10 TCGA-75-5126-01 5 151173720 151173720 G T G3BP1 Missense_Mutation p.G118W 0.10 deleterious(0) probably_damaging(0.985) TCGA-75-5126-01 5 156608074 156608074 G T ITK Missense_Mutation p.R29L 0.08 deleterious(0) probably_damaging(1) TCGA-75-5126-01 5 158634607 158634607 G T RNF145 Intron 0.12 TCGA-75-5126-01 5 16067691 16067691 C G MARCH11 Missense_Mutation p.R366S 0.22 deleterious(0.05) benign(0.024) TCGA-75-5126-01 5 162900478 162900478 G A HMMR Silent p.K273K 0.07 TCGA-75-5126-01 5 167626894 167626894 C A TENM2 Missense_Mutation p.P1063H 0.13 deleterious(0) probably_damaging(0.987) TCGA-75-5126-01 5 170819787 170819787 G T NPM1 Silent p.R142R 0.12 TCGA-75-5126-01 5 178392158 178392158 G T ZNF454 Missense_Mutation p.K251N 0.12 deleterious(0) probably_damaging(0.992) TCGA-75-5126-01 5 19473707 19473707 G T CDH18 Missense_Mutation p.D667E 0.18 deleterious(0) probably_damaging(0.994) TCGA-75-5126-01 5 19838999 19838999 C A CDH18 Missense_Mutation p.V33L 0.13 tolerated(0.77) benign(0.023) TCGA-75-5126-01 5 26906161 26906161 C T CDH9 Missense_Mutation p.D240N 0.11 deleterious(0) probably_damaging(0.997) TCGA-75-5126-01 5 31294201 31294201 A G CDH6 Missense_Mutation p.K121E 0.17 deleterious(0) probably_damaging(0.986) TCGA-75-5126-01 5 32126342 32126342 C G GOLPH3 Silent p.A291A 0.18 TCGA-75-5126-01 5 33577099 33577099 G T ADAMTS12 Missense_Mutation p.S1011Y 0.15 tolerated(1) benign(0.11) TCGA-75-5126-01 5 33642030 33642030 C A ADAMTS12 Missense_Mutation p.G535W 0.09 deleterious(0) probably_damaging(0.998) TCGA-75-5126-01 5 33751492 33751492 C T ADAMTS12 Intron 0.16 TCGA-75-5126-01 5 33947355 33947355 C A SLC45A2 Silent p.L427L 0.13 TCGA-75-5126-01 5 36052050 36052050 C A UGT3A2 Missense_Mutation p.S78I 0.07 tolerated(0.09) possibly_damaging(0.515) TCGA-75-5126-01 5 39074222 39074222 G C RICTOR Missense_Mutation p.L30V 0.36 tolerated(0.09) benign(0.107) TCGA-75-5126-01 5 39315949 39315949 G T C9 Silent p.G266G 0.18 TCGA-75-5126-01 5 54640386 54640386 C G SKIV2L2 Missense_Mutation p.P315A 0.12 deleterious(0) probably_damaging(0.991) TCGA-75-5126-01 5 61923142 61923142 C T IPO11 Silent p.F1015F 0.06 TCGA-75-5126-01 5 63256905 63256905 G C HTR1A Silent p.L214L 0.10 TCGA-75-5126-01 5 64748563 64748563 C G ADAMTS6 Missense_Mutation p.E272Q 0.06 deleterious(0.04) possibly_damaging(0.817) TCGA-75-5126-01 5 66055638 66055638 G C MAST4 Silent p.L155L 0.11 TCGA-75-5126-01 5 6620270 6620270 C A NSUN2 Missense_Mutation p.G255V 0.10 deleterious(0) possibly_damaging(0.734) TCGA-75-5126-01 5 6620271 6620271 C A NSUN2 Missense_Mutation p.G255C 0.11 deleterious(0) probably_damaging(0.996) TCGA-75-5126-01 5 67584462 67584462 G A PIK3R1 Intron 0.17 TCGA-75-5126-01 5 76709008 76709008 C T PDE8B Silent p.T595T 0.08 TCGA-75-5126-01 5 77409608 77409608 T A AP3B1 Silent p.T739T 0.06 TCGA-75-5126-01 5 78076130 78076130 C A ARSB 3'UTR 0.15 TCGA-75-5126-01 5 80631677 80631677 C A ACOT12 Missense_Mutation p.W391L 0.12 tolerated(0.15) benign(0.174) TCGA-75-5126-01 5 95728688 95728688 G T PCSK1 3'UTR 0.12 TCGA-75-5126-01 6 107391909 107391909 G A BEND3 Silent p.S162S 0.14 TCGA-75-5126-01 6 108067985 108067985 T G SCML4 Missense_Mutation p.Q132P 0.14 deleterious(0.01) probably_damaging(0.967) TCGA-75-5126-01 6 108224056 108224056 G A SEC63 Missense_Mutation p.H401Y 0.07 tolerated(0.09) benign(0.233) TCGA-75-5126-01 6 110424732 110424732 C G WASF1 Missense_Mutation p.G248R 0.09 deleterious(0.05) unknown(0) TCGA-75-5126-01 6 110714395 110714395 G C DDO Silent p.V231V 0.10 TCGA-75-5126-01 6 114279889 114279889 G A HDAC2 Silent p.H69H 0.13 TCGA-75-5126-01 6 133072641 133072641 T A VNN2 Silent p.A281A 0.10 TCGA-75-5126-01 6 134210674 134210674 G A TCF21 Missense_Mutation p.G47R 0.14 deleterious(0.02) benign(0.064) TCGA-75-5126-01 6 136589439 136589439 G T BCLAF1 Missense_Mutation p.S753Y 0.17 deleterious(0) possibly_damaging(0.781) TCGA-75-5126-01 6 137815202 137815202 G T OLIG3 Missense_Mutation p.R36S 0.14 tolerated(0.61) benign(0.264) TCGA-75-5126-01 6 152746527 152746527 G C SYNE1 Missense_Mutation p.I1752M 0.14 benign(0.054) TCGA-75-5126-01 6 155153150 155153150 C G SCAF8 Missense_Mutation p.L813V 0.15 tolerated_low_confidence(0.15) benign(0.057) TCGA-75-5126-01 6 160505029 160505029 G A IGF2R Missense_Mutation p.E1961K 0.08 tolerated(0.28) benign(0.272) TCGA-75-5126-01 6 167360194 167360194 C A RNASET2 Missense_Mutation p.W79C 0.25 deleterious(0) probably_damaging(1) TCGA-75-5126-01 6 26108121 26108121 C G HIST1H1T Missense_Mutation p.K67N 0.29 deleterious(0) probably_damaging(1) TCGA-75-5126-01 6 26124671 26124671 G A HIST1H2AC Missense_Mutation p.A71T 0.23 deleterious_low_confidence(0.02) benign(0.025) TCGA-75-5126-01 6 27879654 27879654 G T OR2B2 Silent p.S148S 0.14 TCGA-75-5126-01 6 28327344 28327344 G T ZKSCAN3 5'UTR 0.25 TCGA-75-5126-01 6 28499572 28499572 G C GPX5 Missense_Mutation p.E87Q 0.24 tolerated(0.09) benign(0.291) TCGA-75-5126-01 6 29523866 29523866 C G UBD Missense_Mutation p.D97H 0.19 tolerated(0.09) benign(0.2) TCGA-75-5126-01 6 32117104 32117104 G T PRRT1 Silent p.S272S 0.41 TCGA-75-5126-01 6 38750806 38750806 G - DNAH8 Frame_Shift_Del p.D546Tfs*70 0.11 TCGA-75-5126-01 6 38854628 38854628 C A DNAH8 Missense_Mutation p.P2557H 0.11 probably_damaging(1) TCGA-75-5126-01 6 42851245 42851245 C T RPL7L1 Silent p.S59S 0.06 TCGA-75-5126-01 6 43182863 43182863 G T CUL9 Missense_Mutation p.G1912V 0.11 tolerated(0.69) benign(0.039) TCGA-75-5126-01 6 44107259 44107259 C T TMEM63B Nonsense_Mutation p.Q155* 0.15 TCGA-75-5126-01 6 49753978 49753978 G A PGK2 Missense_Mutation p.S308F 0.06 deleterious(0.01) benign(0.195) TCGA-75-5126-01 6 51612989 51612989 G T PKHD1 Missense_Mutation p.T3142N 0.14 deleterious(0) probably_damaging(1) TCGA-75-5126-01 6 53363677 53363677 C T GCLC Missense_Mutation p.M597I 0.08 tolerated(1) benign(0.001) TCGA-75-5126-01 6 55120106 55120106 A G HCRTR2 Missense_Mutation p.E192G 0.10 deleterious(0.01) possibly_damaging(0.665) TCGA-75-5126-01 6 55198740 55198740 C T GFRAL Missense_Mutation p.S105L 0.14 deleterious(0.02) benign(0.058) TCGA-75-5126-01 6 56492813 56492813 T A DST Missense_Mutation p.Q1004L 0.16 benign(0.045) TCGA-75-5126-01 6 57012630 57012630 G T ZNF451 Missense_Mutation p.A583S 0.07 tolerated(0.41) benign(0.05) TCGA-75-5126-01 6 63990290 63990290 T C LGSN Missense_Mutation p.N389S 0.15 tolerated(0.07) possibly_damaging(0.643) TCGA-75-5126-01 6 69348553 69348553 G T BAI3 Intron 0.08 TCGA-75-5126-01 6 72947557 72947557 G T RIMS1 Missense_Mutation p.R630L 0.11 deleterious(0) possibly_damaging(0.551) TCGA-75-5126-01 6 74079496 74079496 G C OOEP Missense_Mutation p.A7G 0.08 tolerated(0.26) benign(0.201) TCGA-75-5126-01 6 82924239 82924239 T C IBTK Missense_Mutation p.T637A 0.06 deleterious(0.01) possibly_damaging(0.902) TCGA-75-5126-01 6 83075585 83075585 G A TPBG Missense_Mutation p.A303T 0.17 tolerated(0.19) benign(0.002) TCGA-75-5126-01 6 84799294 84799294 G T MRAP2 3'UTR 0.15 TCGA-75-5126-01 6 97246829 97246829 T A GPR63 Missense_Mutation p.Y260F 0.14 tolerated(0.38) benign(0.38) TCGA-75-5126-01 7 100174741 100174741 C A LRCH4 Silent p.G444G 0.12 TCGA-75-5126-01 7 100364793 100364793 G T ZAN Silent p.G1591G 0.14 TCGA-75-5126-01 7 100385713 100385713 C A ZAN Silent p.T2393T 0.27 TCGA-75-5126-01 7 103194238 103194238 G T RELN Silent p.I1946I 0.17 TCGA-75-5126-01 7 103363606 103363606 A G RELN Silent p.S262S 0.31 TCGA-75-5126-01 7 103969375 103969375 G A LHFPL3 Missense_Mutation p.V50I 0.10 tolerated(1) probably_damaging(0.993) TCGA-75-5126-01 7 104749463 104749463 C G KMT2E Silent p.L1181L 0.08 TCGA-75-5126-01 7 123296091 123296091 T C LMOD2 Missense_Mutation p.L25P 0.29 deleterious(0) probably_damaging(1) TCGA-75-5126-01 7 126173904 126173904 T G GRM8 Missense_Mutation p.H511P 0.07 tolerated(0.33) benign(0.013) TCGA-75-5126-01 7 128846155 128846155 T G SMO Missense_Mutation p.L362R 0.24 deleterious(0) probably_damaging(0.983) TCGA-75-5126-01 7 129317534 129317534 G T NRF1 Missense_Mutation p.C134F 0.25 deleterious(0.05) possibly_damaging(0.715) TCGA-75-5126-01 7 129350356 129350356 C A NRF1 Nonsense_Mutation p.S303* 0.25 TCGA-75-5126-01 7 138394486 138394486 C A ATP6V0A4 Missense_Mutation p.G771V 0.21 deleterious(0.02) possibly_damaging(0.598) TCGA-75-5126-01 7 142045545 142045545 C A TRBV4-2 Missense_Mutation p.Q25K 0.05 deleterious(0) probably_damaging(1) TCGA-75-5126-01 7 142206665 142206665 G T TRBV10-2 Missense_Mutation p.L64M 0.07 deleterious(0) probably_damaging(1) TCGA-75-5126-01 7 143053878 143053878 C - FAM131B Frame_Shift_Del p.G283Efs*9 0.21 TCGA-75-5126-01 7 146536957 146536958 - T CNTNAP2 Frame_Shift_Ins p.R122* 0.27 TCGA-75-5126-01 7 14775748 14775748 A T DGKB Silent p.T80T 0.16 TCGA-75-5126-01 7 147869430 147869430 C G CNTNAP2 Missense_Mutation p.S957C 0.12 deleterious(0) possibly_damaging(0.726) TCGA-75-5126-01 7 147926752 147926752 C T CNTNAP2 Nonsense_Mutation p.R1088* 0.13 TCGA-75-5126-01 7 150069696 150069696 G A REPIN1 Missense_Mutation p.D513N 0.15 deleterious(0.01) benign(0.15) TCGA-75-5126-01 7 150094415 150094415 C G ZNF775 Missense_Mutation p.I282M 0.14 deleterious(0.03) probably_damaging(0.998) TCGA-75-5126-01 7 150167962 150167962 G T GIMAP8 Missense_Mutation p.G228C 0.13 tolerated(0.06) probably_damaging(0.996) TCGA-75-5126-01 7 150174463 150174463 G A GIMAP8 Silent p.V531V 0.31 TCGA-75-5126-01 7 150389659 150389659 G A GIMAP2 Silent p.V95V 0.16 TCGA-75-5126-01 7 151945153 151945153 G A KMT2C Missense_Mutation p.S789L 0.07 benign(0.002) TCGA-75-5126-01 7 151945231 151945231 G A KMT2C Missense_Mutation p.S763L 0.13 benign(0.001) TCGA-75-5126-01 7 16649287 16649287 G C ANKMY2 Missense_Mutation p.Q284E 0.09 deleterious(0) probably_damaging(0.986) TCGA-75-5126-01 7 21516717 21516717 G C SP4 Missense_Mutation p.G567R 0.15 deleterious(0.01) benign(0.348) TCGA-75-5126-01 7 30475652 30475652 C T NOD1 Silent p.A861A 0.25 TCGA-75-5126-01 7 33020067 33020067 G T FKBP9 Missense_Mutation p.K265N 0.10 tolerated(0.62) benign(0.017) TCGA-75-5126-01 7 36763639 36763639 G T AOAH Missense_Mutation p.H39N 0.13 tolerated(0.32) benign(0.055) TCGA-75-5126-01 7 42085017 42085017 C A GLI3 Silent p.G264G 0.10 TCGA-75-5126-01 7 44524670 44524670 G C NUDCD3 Missense_Mutation p.P136A 0.15 tolerated(0.49) benign(0.001) TCGA-75-5126-01 7 73630349 73630357 TGGTGCTGT - LAT2 In_Frame_Del p.V16_L18del 0.16 TCGA-75-5126-01 7 82544191 82544191 T A PCLO Missense_Mutation p.M4371L 0.09 unknown(0) TCGA-75-5126-01 7 84651811 84651811 C A SEMA3D Missense_Mutation p.G437V 0.20 deleterious(0) benign(0.005) TCGA-75-5126-01 7 92000797 92000797 G C ANKIB1 Missense_Mutation p.G498A 0.41 deleterious(0.03) possibly_damaging(0.627) TCGA-75-5126-01 7 92923863 92923863 G T CCDC132 Missense_Mutation p.S361I 0.11 tolerated(0.22) benign(0.002) TCGA-75-5126-01 7 92970769 92970769 A T CCDC132 Missense_Mutation p.T697S 0.14 tolerated(0.77) benign(0.001) TCGA-75-5126-01 7 92987894 92987895 TG - CCDC132 3'UTR 0.28 TCGA-75-5126-01 7 93536065 93536065 G T GNGT1 Missense_Mutation p.V3L 0.16 deleterious_low_confidence(0.03) benign(0.048) TCGA-75-5126-01 7 98446204 98446204 A G TMEM130 Splice_Site p.X373_splice 0.06 TCGA-75-5126-01 8 100789079 100789079 G A VPS13B Missense_Mutation p.V2467I 0.06 deleterious(0.04) benign(0.417) TCGA-75-5126-01 8 104384794 104384794 T A CTHRC1 Intron 0.12 TCGA-75-5126-01 8 104898002 104898002 C T RIMS2 Missense_Mutation p.S392L 0.18 deleterious_low_confidence(0.03) possibly_damaging(0.879) TCGA-75-5126-01 8 105463629 105463629 C A DPYS Missense_Mutation p.A90S 0.11 deleterious(0.01) possibly_damaging(0.704) TCGA-75-5126-01 8 110451183 110451183 T C PKHD1L1 Missense_Mutation p.M1273T 0.09 tolerated(0.66) benign(0.009) TCGA-75-5126-01 8 117870687 117870687 C A RAD21 Missense_Mutation p.V129L 0.09 deleterious(0.02) benign(0.007) TCGA-75-5126-01 8 124251334 124251334 G C C8orf76 Silent p.L56L 0.04 TCGA-75-5126-01 8 131104234 131104234 C A ASAP1 Missense_Mutation p.G853C 0.13 deleterious(0.05) possibly_damaging(0.751) TCGA-75-5126-01 8 131792956 131792956 C T ADCY8 Missense_Mutation p.A1146T 0.11 tolerated(0.45) benign(0.026) TCGA-75-5126-01 8 134145810 134145810 G C TG Missense_Mutation p.K2698N 0.11 deleterious(0.01) possibly_damaging(0.579) TCGA-75-5126-01 8 135614084 135614084 C A ZFAT Silent p.T626T 0.11 TCGA-75-5126-01 8 141231580 141231580 G C TRAPPC9 Missense_Mutation p.A943G 0.13 tolerated(0.37) benign(0.074) TCGA-75-5126-01 8 141545586 141545586 C A AGO2 Missense_Mutation p.C751F 0.11 deleterious(0) probably_damaging(0.991) TCGA-75-5126-01 8 142228200 142228200 G C SLC45A4 Silent p.L462L 0.08 TCGA-75-5126-01 8 144874231 144874231 C A SCRIB Silent p.T1529T 0.33 TCGA-75-5126-01 8 20110593 20110593 G - LZTS1 Frame_Shift_Del p.F284Lfs*70 0.09 TCGA-75-5126-01 8 2092729 2092729 G T MYOM2 Missense_Mutation p.V1408L 0.18 deleterious(0) benign(0.341) TCGA-75-5126-01 8 30694318 30694318 C A TEX15 Splice_Site p.X2778_splice 0.09 TCGA-75-5126-01 8 38835503 38835503 C A HTRA4 Nonsense_Mutation p.S268* 0.11 TCGA-75-5126-01 8 41572557 41572557 G A ANK1 Silent p.Y579Y 0.09 TCGA-75-5126-01 8 48719705 48719705 C A PRKDC Missense_Mutation p.R3246L 0.10 benign(0.053) TCGA-75-5126-01 8 52336217 52336217 C G PXDNL Silent p.G571G 0.10 TCGA-75-5126-01 8 53045828 53045828 G T ST18 Missense_Mutation p.H778Q 0.11 deleterious(0) probably_damaging(1) TCGA-75-5126-01 8 68179364 68179364 C A ARFGEF1 Nonsense_Mutation p.G592* 0.15 TCGA-75-5126-01 8 70978624 70978624 C A PRDM14 Missense_Mutation p.Q343H 0.15 deleterious(0) probably_damaging(0.998) TCGA-75-5126-01 8 72754968 72754968 C T MSC Silent p.V183V 0.10 TCGA-75-5126-01 8 75944503 75944503 A G CRISPLD1 3'UTR 0.08 TCGA-75-5126-01 8 76452273 76452273 A G HNF4G Missense_Mutation p.T16A 0.12 tolerated(0.09) benign(0.005) TCGA-75-5126-01 8 77619809 77619809 G T ZFHX4 Silent p.R873R 0.14 TCGA-75-5126-01 8 86249255 86249255 G A CA1 Silent p.L91L 0.06 TCGA-75-5126-01 8 95539232 95539232 C A KIAA1429 Missense_Mutation p.G414W 0.06 deleterious(0) probably_damaging(0.998) TCGA-75-5126-01 9 112705113 112705113 G T PALM2 Missense_Mutation p.R215L 0.19 tolerated(0.25) benign(0.033) TCGA-75-5126-01 9 113173599 113173599 T A SVEP1 Missense_Mutation p.Q2131L 0.23 benign(0.012) TCGA-75-5126-01 9 117033025 117033025 G T COL27A1 Missense_Mutation p.E1191D 0.13 possibly_damaging(0.743) TCGA-75-5126-01 9 119187757 119187757 C A ASTN2 3'UTR 0.21 TCGA-75-5126-01 9 123675735 123675735 C G TRAF1 Silent p.G192G 0.12 TCGA-75-5126-01 9 125273228 125273228 C A OR1J2 Missense_Mutation p.Q50K 0.25 deleterious_low_confidence(0.02) benign(0) TCGA-75-5126-01 9 130551824 130551824 G T CDK9 3'UTR 0.12 TCGA-75-5126-01 9 13137969 13137969 T A MPDZ Missense_Mutation p.D1396V 0.08 deleterious(0) probably_damaging(1) TCGA-75-5126-01 9 135266129 135266129 C G TTF1 Missense_Mutation p.E693Q 0.19 deleterious(0.01) possibly_damaging(0.76) TCGA-75-5126-01 9 137688239 137688239 G T COL5A1 Missense_Mutation p.G940V 0.17 unknown(0) TCGA-75-5126-01 9 137998651 137998651 A T OLFM1 Missense_Mutation p.R227W 0.21 deleterious(0) probably_damaging(0.963) TCGA-75-5126-01 9 19116449 19116449 G A PLIN2 Missense_Mutation p.L371F 0.17 deleterious(0) probably_damaging(0.99) TCGA-75-5126-01 9 21334826 21334826 G A KLHL9 Silent p.G11G 0.18 TCGA-75-5126-01 9 27183579 27183579 C A TEK Missense_Mutation p.L385M 0.16 deleterious(0.01) probably_damaging(1) TCGA-75-5126-01 9 32492480 32492480 G A DDX58 Silent p.L160L 0.19 TCGA-75-5126-01 9 34126386 34126386 G A DCAF12 Missense_Mutation p.S15L 0.11 tolerated_low_confidence(0.22) benign(0.026) TCGA-75-5126-01 9 34648934 34648934 A C GALT Intron 0.13 TCGA-75-5126-01 9 35704723 35704723 G A TLN1 Silent p.P1941P 0.12 TCGA-75-5126-01 9 43630714 43630714 G C SPATA31A6 5'UTR 0.20 TCGA-75-5126-01 9 6012421 6012421 C A RANBP6 Missense_Mutation p.D1063Y 0.17 deleterious(0.02) benign(0.416) TCGA-75-5126-01 9 75526984 75526984 C G ALDH1A1 Missense_Mutation p.E364Q 0.26 tolerated(0.18) benign(0.019) TCGA-75-5126-01 9 84532371 84532371 C A SPATA31D5P RNA 0.22 TCGA-75-5126-01 9 8507349 8507349 G A PTPRD Silent p.T543T 0.13 TCGA-75-5126-01 9 85950546 85950546 C A FRMD3 Missense_Mutation p.G161C 0.23 deleterious(0.02) probably_damaging(0.975) TCGA-75-5126-01 9 94173119 94173119 C T NFIL3 5'UTR 0.33 TCGA-75-5126-01 X 100356187 100356187 C T CENPI Missense_Mutation p.S43L 0.12 tolerated(0.36) benign(0.003) TCGA-75-5126-01 X 105190361 105190361 G C NRK Missense_Mutation p.E1421Q 0.12 tolerated(0.13) probably_damaging(0.994) TCGA-75-5126-01 X 119575692 119575692 T A LAMP2 Missense_Mutation p.Y329F 0.15 deleterious(0) probably_damaging(0.971) TCGA-75-5126-01 X 125298989 125298989 G T DCAF12L2 Silent p.R307R 0.16 TCGA-75-5126-01 X 130218994 130218994 C A ARHGAP36 Missense_Mutation p.S304Y 0.09 deleterious(0) probably_damaging(0.954) TCGA-75-5126-01 X 130417006 130417006 G A IGSF1 Silent p.D300D 0.14 TCGA-75-5126-01 X 135430934 135430934 C T GPR112 Missense_Mutation p.S1690F 0.23 tolerated(0.09) benign(0.07) TCGA-75-5126-01 X 135455157 135455157 G A GPR112 Silent p.R2570R 0.12 TCGA-75-5126-01 X 138713553 138713553 C A MCF2 Splice_Site p.X156_splice 0.19 TCGA-75-5126-01 X 140995831 140995831 T C MAGEC1 Missense_Mutation p.S881P 0.17 tolerated(0.09) unknown(0) TCGA-75-5126-01 X 146341228 146341228 C T MIR509-3 RNA 0.13 TCGA-75-5126-01 X 149013559 149013559 A T MAGEA8 Missense_Mutation p.E171D 0.11 deleterious(0.03) benign(0.096) TCGA-75-5126-01 X 151869542 151869542 C A MAGEA6 Missense_Mutation p.P78T 0.09 tolerated(1) benign(0.001) TCGA-75-5126-01 X 152481991 152481991 G T MAGEA1 3'UTR 0.29 TCGA-75-5126-01 X 153171639 153171639 C G AVPR2 Missense_Mutation p.L227V 0.12 tolerated(0.27) probably_damaging(0.955) TCGA-75-5126-01 X 154493666 154493666 T C RAB39B 5'UTR 0.44 TCGA-75-5126-01 X 155239571 155239571 G T IL9R Missense_Mutation p.A355S 0.07 tolerated(0.09) benign(0.442) TCGA-75-5126-01 X 21863482 21863482 G C MBTPS2 Missense_Mutation p.E140Q 0.11 tolerated(0.71) benign(0.011) TCGA-75-5126-01 X 22112124 22112124 C A PHEX Missense_Mutation p.F252L 0.14 tolerated(0.23) benign(0.026) TCGA-75-5126-01 X 26212996 26212996 C T MAGEB6 Missense_Mutation p.R345W 0.14 tolerated(0.06) benign(0.001) TCGA-75-5126-01 X 30254210 30254210 A C MAGEB3 Silent p.R57R 0.19 TCGA-75-5126-01 X 3235848 3235848 C A MXRA5 Missense_Mutation p.Q1958H 0.17 deleterious(0.05) probably_damaging(0.928) TCGA-75-5126-01 X 34962493 34962493 C A FAM47B Missense_Mutation p.D515E 0.19 tolerated(0.08) probably_damaging(0.945) TCGA-75-5126-01 X 36091444 36091444 G T CHDC2 Nonsense_Mutation p.G127* 0.21 TCGA-75-5126-01 X 37029546 37029546 T A FAM47C Silent p.V1021V 0.17 TCGA-75-5126-01 X 44969432 44969432 T - KDM6A Frame_Shift_Del p.F1372Lfs*4 0.18 TCGA-75-5126-01 X 64709219 64709219 C A ZC3H12B Missense_Mutation p.L180I 0.11 tolerated(0.05) benign(0.426) TCGA-75-5126-01 X 65480010 65480010 G A HEPH Silent p.V1089V 0.21 TCGA-75-5126-01 X 65480070 65480070 C A HEPH Silent p.G1109G 0.28 TCGA-75-5126-01 X 73962057 73962057 C A KIAA2022 Missense_Mutation p.A779S 0.18 tolerated(0.85) benign(0.006) TCGA-75-5126-01 X 77912982 77912982 G T ZCCHC5 Silent p.L312L 0.14 TCGA-75-5126-01 X 78011436 78011436 C A LPAR4 Missense_Mutation p.T357K 0.14 tolerated_low_confidence(0.07) benign(0) TCGA-75-5146-01 10 117045738 117045738 G A ATRNL1 Missense_Mutation p.G749E 0.16 deleterious(0) possibly_damaging(0.894) TCGA-75-5146-01 10 118897464 118897464 G T VAX1 Missense_Mutation p.A35E 0.27 deleterious(0.01) unknown(0) TCGA-75-5146-01 10 119043833 119043833 T A PDZD8 Missense_Mutation p.H804L 0.15 tolerated(0.41) benign(0) TCGA-75-5146-01 10 12191875 12191875 G T SEC61A2 Missense_Mutation p.G126V 0.34 tolerated(0.1) benign(0.021) TCGA-75-5146-01 10 134038769 134038769 C A STK32C Missense_Mutation p.G282W 0.22 deleterious(0) probably_damaging(1) TCGA-75-5146-01 10 16873346 16873346 A T CUBN Missense_Mutation p.V3478D 0.19 deleterious(0) probably_damaging(0.953) TCGA-75-5146-01 10 22607738 22607738 A G COMMD3 Missense_Mutation p.N139D 0.34 tolerated(0.17) probably_damaging(0.973) TCGA-75-5146-01 10 49430483 49430483 G T FRMPD2 Missense_Mutation p.T443K 0.35 deleterious(0) probably_damaging(0.909) TCGA-75-5146-01 10 60272985 60272985 G T BICC1 Missense_Mutation p.V28L 0.30 tolerated_low_confidence(1) benign(0) TCGA-75-5146-01 10 78317043 78317043 C T C10orf11 Silent p.L198L 0.33 TCGA-75-5146-01 10 78647236 78647236 C A KCNMA1 Missense_Mutation p.V1150L 0.32 tolerated(1) benign(0.01) TCGA-75-5146-01 10 93744142 93744142 T C BTAF1 Missense_Mutation p.I803T 0.19 deleterious(0) possibly_damaging(0.493) TCGA-75-5146-01 10 98405277 98405277 A T PIK3AP1 Missense_Mutation p.L443H 0.23 deleterious(0) probably_damaging(0.999) TCGA-75-5146-01 11 1098690 1098690 G C MUC2 Missense_Mutation p.A2354P 0.28 unknown(0) TCGA-75-5146-01 11 111152148 111152148 C T C11orf53 5'UTR 0.29 TCGA-75-5146-01 11 116619165 116619165 C A BUD13 3'UTR 0.26 TCGA-75-5146-01 11 117869691 117869691 G T IL10RA Missense_Mutation p.D358Y 0.20 deleterious(0.02) benign(0.39) TCGA-75-5146-01 11 120008387 120008387 G T TRIM29 Missense_Mutation p.P118H 0.24 deleterious_low_confidence(0) possibly_damaging(0.606) TCGA-75-5146-01 11 123600515 123600515 C A ZNF202 Missense_Mutation p.G141C 0.35 deleterious(0) probably_damaging(0.994) TCGA-75-5146-01 11 124487352 124487352 C T PANX3 Silent p.S169S 0.34 TCGA-75-5146-01 11 125648692 125648692 C A PATE2 5'UTR 0.14 TCGA-75-5146-01 11 1264035 1264035 C A MUC5B Silent p.P1975P 0.34 TCGA-75-5146-01 11 18750450 18750450 G T PTPN5 3'UTR 0.33 TCGA-75-5146-01 11 19177405 19177405 C T ZDHHC13 Silent p.F312F 0.41 TCGA-75-5146-01 11 2591907 2591907 G C KCNQ1 Missense_Mutation p.W176S 0.23 deleterious(0) probably_damaging(1) TCGA-75-5146-01 11 34478364 34478364 G T CAT Missense_Mutation p.Q352H 0.31 deleterious(0.02) probably_damaging(0.992) TCGA-75-5146-01 11 4104601 4104601 A T STIM1 Silent p.S449S 0.27 TCGA-75-5146-01 11 49830115 49830115 C T RP11-707M1.1 RNA 0.11 TCGA-75-5146-01 11 56143645 56143645 G T OR8U1 Missense_Mutation p.M182I 0.14 tolerated(0.25) benign(0.257) TCGA-75-5146-01 11 56431279 56431279 G T OR5AR1 Missense_Mutation p.V40L 0.24 tolerated(0.48) benign(0.002) TCGA-75-5146-01 11 5906021 5906021 C G OR52E4 Missense_Mutation p.R167G 0.28 deleterious(0) probably_damaging(0.99) TCGA-75-5146-01 11 63992969 63992969 A C TRPT1 Splice_Site p.X53_splice 0.33 TCGA-75-5146-01 11 66358319 66358319 C T CCDC87 Missense_Mutation p.R723Q 0.30 tolerated(0.97) benign(0.002) TCGA-75-5146-01 11 6806406 6806406 C A OR2AG1 Silent p.L46L 0.23 TCGA-75-5146-01 11 69514154 69514154 G T FGF19 Missense_Mutation p.P176H 0.24 deleterious(0.01) benign(0.352) TCGA-75-5146-01 11 73008274 73008274 G T P2RY6 Silent p.A237A 0.26 TCGA-75-5146-01 11 73020531 73020531 G T ARHGEF17 Missense_Mutation p.G283V 0.32 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-75-5146-01 11 82876987 82876987 G T PCF11 Nonsense_Mutation p.E350* 0.20 TCGA-75-5146-01 11 92590441 92590441 G T FAT3 Missense_Mutation p.Q3809H 0.23 benign(0.082) TCGA-75-5146-01 11 92714983 92714983 C A MTNR1B Silent p.T198T 0.27 TCGA-75-5146-01 11 92881599 92881599 C A SLC36A4 3'UTR 0.30 TCGA-75-5146-01 12 113907096 113907096 C A LHX5 Silent p.L76L 0.26 TCGA-75-5146-01 12 114793888 114793888 G A TBX5 Missense_Mutation p.H336Y 0.06 deleterious(0.03) possibly_damaging(0.556) TCGA-75-5146-01 12 120636469 120636469 A C RPLP0 Missense_Mutation p.I180S 0.27 deleterious(0) possibly_damaging(0.767) TCGA-75-5146-01 12 25702345 25702345 C A IFLTD1 Missense_Mutation p.Q75H 0.31 tolerated(0.08) benign(0.053) TCGA-75-5146-01 12 29642629 29642629 T A OVCH1 Missense_Mutation p.K209M 0.26 deleterious(0.01) probably_damaging(0.935) TCGA-75-5146-01 12 4736589 4736589 G C AKAP3 Silent p.S493S 0.29 TCGA-75-5146-01 12 52841671 52841671 G T KRT6B Missense_Mutation p.Q439K 0.33 deleterious(0.01) probably_damaging(0.909) TCGA-75-5146-01 12 53201583 53201583 G T KRT4 Silent p.A397A 0.30 TCGA-75-5146-01 12 56346633 56346633 G A DGKA Missense_Mutation p.G620E 0.18 tolerated(0.09) benign(0.261) TCGA-75-5146-01 12 57858560 57858560 C T GLI1 Missense_Mutation p.R100C 0.29 deleterious(0) possibly_damaging(0.88) TCGA-75-5146-01 12 57858976 57858976 G T GLI1 Missense_Mutation p.D158Y 0.23 tolerated(0.07) possibly_damaging(0.757) TCGA-75-5146-01 12 64491115 64491115 C T SRGAP1 Silent p.L591L 0.20 TCGA-75-5146-01 12 7014864 7014864 G T LRRC23 Nonsense_Mutation p.E23* 0.18 TCGA-75-5146-01 12 85285942 85285942 C G SLC6A15 5'UTR 0.24 TCGA-75-5146-01 13 100634871 100634871 G T ZIC2 Missense_Mutation p.G185C 0.62 deleterious(0) probably_damaging(0.999) TCGA-75-5146-01 13 38237654 38237654 T C TRPC4 Silent p.A529A 0.46 TCGA-75-5146-01 13 41486617 41486617 C T SUGT1P3 RNA 0.42 TCGA-75-5146-01 13 53036592 53036592 G A CKAP2 Missense_Mutation p.E400K 0.28 tolerated(0.11) benign(0.021) TCGA-75-5146-01 13 84454814 84454814 G T SLITRK1 Missense_Mutation p.Q277K 0.42 tolerated(0.33) benign(0.044) TCGA-75-5146-01 13 99340562 99340562 A T SLC15A1 Silent p.P541P 0.16 TCGA-75-5146-01 14 106235814 106235814 C A IGHG3 Silent p.L298L 0.38 TCGA-75-5146-01 14 66028456 66028456 G A FUT8 Missense_Mutation p.D59N 0.42 tolerated(0.16) benign(0.018) TCGA-75-5146-01 15 100636656 100636656 C A ADAMTS17 Missense_Mutation p.G681V 0.20 deleterious(0) probably_damaging(0.998) TCGA-75-5146-01 15 24922411 24922411 C A NPAP1 Missense_Mutation p.P466H 0.22 tolerated(0.14) possibly_damaging(0.894) TCGA-75-5146-01 15 24923271 24923271 G T NPAP1 Missense_Mutation p.V753F 0.25 tolerated(0.2) benign(0.003) TCGA-75-5146-01 15 27182452 27182452 C A GABRA5 Missense_Mutation p.T234N 0.31 tolerated(0.18) possibly_damaging(0.661) TCGA-75-5146-01 15 42147077 42147077 C A SPTBN5 Missense_Mutation p.R3174L 0.24 possibly_damaging(0.778) TCGA-75-5146-01 16 2373438 2373438 A G ABCA3 Intron 0.32 TCGA-75-5146-01 16 27445756 27445756 G T IL21R Silent p.T46T 0.47 TCGA-75-5146-01 16 51176012 51176012 C G SALL1 Missense_Mutation p.D41H 0.25 deleterious(0) probably_damaging(0.94) TCGA-75-5146-01 16 72124580 72124580 C A TXNL4B Missense_Mutation p.E23D 0.27 tolerated(1) benign(0.001) TCGA-75-5146-01 17 10399302 10399302 C T MYH1 Missense_Mutation p.D1712N 0.38 deleterious(0.01) possibly_damaging(0.785) TCGA-75-5146-01 17 10544690 10544690 C A MYH3 Splice_Site p.X654_splice 0.30 TCGA-75-5146-01 17 21319603 21319603 C A KCNJ12 Missense_Mutation p.L317M 0.06 tolerated(0.07) probably_damaging(0.961) TCGA-75-5146-01 17 27182086 27182086 G A ERAL1 Missense_Mutation p.V12I 0.25 tolerated_low_confidence(0.08) benign(0.073) TCGA-75-5146-01 17 3195311 3195311 T C OR3A1 Missense_Mutation p.Q189R 0.33 tolerated(0.08) benign(0.062) TCGA-75-5146-01 17 33497247 33497247 C G UNC45B Silent p.A554A 0.19 TCGA-75-5146-01 17 34062078 34062078 G T RASL10B 5'UTR 0.20 TCGA-75-5146-01 17 35578665 35578665 C A ACACA Silent p.L1221L 0.19 TCGA-75-5146-01 17 39274174 39274174 G T KRTAP4-11 Missense_Mutation p.P132T 0.28 tolerated(0.1) unknown(0) TCGA-75-5146-01 17 39538481 39538481 G T KRT34 Nonsense_Mutation p.C48* 0.18 TCGA-75-5146-01 17 6024017 6024017 C T WSCD1 3'UTR 0.44 TCGA-75-5146-01 17 71391459 71391459 C A SDK2 Missense_Mutation p.G1143W 0.24 deleterious(0.02) probably_damaging(0.968) TCGA-75-5146-01 17 7495160 7495160 A T FXR2 Missense_Mutation p.N670K 0.30 deleterious_low_confidence(0) benign(0.027) TCGA-75-5146-01 17 7577105 7577105 G T TP53 Missense_Mutation p.P278H 0.38 deleterious(0) probably_damaging(1) TCGA-75-5146-01 17 7577138 7577138 C A TP53 Missense_Mutation p.R267L 0.14 deleterious(0) probably_damaging(0.973) TCGA-75-5146-01 17 8731976 8731976 C A PIK3R6 Silent p.L407L 0.32 TCGA-75-5146-01 17 8785177 8785177 G A PIK3R5 Missense_Mutation p.R743C 0.40 deleterious(0) probably_damaging(0.93) TCGA-75-5146-01 17 8792128 8792128 C G PIK3R5 Missense_Mutation p.E326Q 0.33 tolerated(0.1) benign(0.059) TCGA-75-5146-01 17 9850262 9850262 C A GAS7 Silent p.P188P 0.27 TCGA-75-5146-01 18 32823239 32823239 T C ZNF397 Missense_Mutation p.C180R 0.24 tolerated(0.37) benign(0.235) TCGA-75-5146-01 18 51813703 51813703 T C POLI Missense_Mutation p.Y374H 0.37 tolerated(0.07) benign(0.016) TCGA-75-5146-01 18 59828461 59828461 T A PIGN Silent p.P42P 0.24 TCGA-75-5146-01 19 1220699 1220699 G T STK11 Missense_Mutation p.W239C 0.48 deleterious(0) probably_damaging(1) TCGA-75-5146-01 19 15733988 15733988 C A CYP4F8 RNA 0.33 TCGA-75-5146-01 19 18272854 18272854 G T PIK3R2 Silent p.A298A 0.30 TCGA-75-5146-01 19 20727575 20727575 C A ZNF737 Missense_Mutation p.E478D 0.31 deleterious(0.04) benign(0.424) TCGA-75-5146-01 19 22847646 22847646 C A ZNF492 Missense_Mutation p.P392H 0.15 deleterious(0.01) probably_damaging(0.985) TCGA-75-5146-01 19 30936032 30936032 C A ZNF536 Nonsense_Mutation p.Y521* 0.20 TCGA-75-5146-01 19 44564659 44564659 G T ZNF223 Missense_Mutation p.G23W 0.28 deleterious(0) probably_damaging(0.928) TCGA-75-5146-01 19 44891421 44891421 G A ZNF285 Missense_Mutation p.S329F 0.34 deleterious(0.03) possibly_damaging(0.863) TCGA-75-5146-01 19 53668353 53668353 C G ZNF665 Missense_Mutation p.G464R 0.21 deleterious(0) probably_damaging(0.998) TCGA-75-5146-01 19 53793228 53793228 C A BIRC8 Nonsense_Mutation p.E134* 0.22 TCGA-75-5146-01 19 57132833 57132834 - A ZNF71 Frame_Shift_Ins p.G60Efs*18 0.20 TCGA-75-5146-01 19 59028554 59028554 C A ZBTB45 Missense_Mutation p.G163W 0.30 tolerated(0.07) probably_damaging(1) TCGA-75-5146-01 19 9204166 9204166 G T OR1M1 Silent p.L82L 0.35 TCGA-75-5146-01 1 100185118 100185118 G A FRRS1 Silent p.S364S 0.34 TCGA-75-5146-01 1 100672123 100672123 G A DBT Nonsense_Mutation p.Q363* 0.29 TCGA-75-5146-01 1 102269750 102269750 C A OLFM3 3'UTR 0.24 TCGA-75-5146-01 1 11345795 11345795 G T UBIAD1 Silent p.G208G 0.17 TCGA-75-5146-01 1 115418714 115418714 C G SYCP1 Missense_Mutation p.L228V 0.24 deleterious(0) probably_damaging(0.999) TCGA-75-5146-01 1 11709842 11709842 T A FBXO2 Missense_Mutation p.K204M 0.12 deleterious(0) probably_damaging(0.952) TCGA-75-5146-01 1 118496508 118496508 G A SPAG17 3'UTR 0.45 TCGA-75-5146-01 1 144877096 144877096 G T PDE4DIP Silent p.R1531R 0.19 TCGA-75-5146-01 1 145586946 145586946 G T NUDT17 Missense_Mutation p.L248I 0.25 deleterious(0.02) benign(0.234) TCGA-75-5146-01 1 152328737 152328737 C T FLG2 Missense_Mutation p.G509R 0.25 unknown(0) TCGA-75-5146-01 1 16101240 16101240 G T FBLIM1 Missense_Mutation p.S280I 0.16 deleterious(0) possibly_damaging(0.864) TCGA-75-5146-01 1 161087769 161087769 C A PFDN2 Silent p.A16A 0.17 TCGA-75-5146-01 1 16918548 16918548 G C NBPF1 5'UTR 0.09 TCGA-75-5146-01 1 173886421 173886421 G T SERPINC1 5'UTR 0.24 TCGA-75-5146-01 1 176668286 176668286 C A PAPPA2 Missense_Mutation p.P933T 0.38 deleterious(0) probably_damaging(0.971) TCGA-75-5146-01 1 181702858 181702858 C T CACNA1E Silent p.D1078D 0.29 TCGA-75-5146-01 1 197070841 197070841 A T ASPM Missense_Mutation p.Y2514N 0.27 deleterious(0) probably_damaging(0.991) TCGA-75-5146-01 1 197390533 197390533 C - CRB1 Frame_Shift_Del p.R526Efs*8 0.31 TCGA-75-5146-01 1 207105801 207105801 C T PIGR Missense_Mutation p.D670N 0.20 deleterious(0) probably_damaging(1) TCGA-75-5146-01 1 216462704 216462704 G T USH2A Missense_Mutation p.A630E 0.28 possibly_damaging(0.877) TCGA-75-5146-01 1 222923324 222923324 A - FAM177B Frame_Shift_Del p.K135Sfs*18 0.39 TCGA-75-5146-01 1 242253245 242253245 G T PLD5 Missense_Mutation p.P508T 0.30 deleterious(0.04) benign(0.193) TCGA-75-5146-01 1 247201596 247201596 C A ZNF670 Nonsense_Mutation p.G109* 0.20 TCGA-75-5146-01 1 248569559 248569559 A G OR2T1 Silent p.A88A 0.18 TCGA-75-5146-01 1 248813976 248813976 G T OR2T27 Missense_Mutation p.D70E 0.11 deleterious(0) probably_damaging(0.999) TCGA-75-5146-01 1 68954074 68954074 A G DEPDC1 Missense_Mutation p.I235T 0.18 tolerated(0.6) benign(0.025) TCGA-75-5146-01 1 75037052 75037052 G T C1orf173 Missense_Mutation p.Q1448K 0.23 tolerated(0.5) benign(0.013) TCGA-75-5146-01 1 75078489 75078489 G C C1orf173 Silent p.T335T 0.23 TCGA-75-5146-01 1 84403666 84403666 C A TTLL7 Missense_Mutation p.V253L 0.21 deleterious(0) probably_damaging(0.915) TCGA-75-5146-01 20 10277675 10277675 C A SNAP25 Silent p.A128A 0.18 TCGA-75-5146-01 20 30408290 30408290 A T MYLK2 Silent p.A138A 0.33 TCGA-75-5146-01 20 30584986 30584986 C A XKR7 Missense_Mutation p.A489E 0.59 tolerated(0.47) benign(0.224) TCGA-75-5146-01 20 333933 333933 T C NRSN2 Missense_Mutation p.L90P 0.26 deleterious(0) possibly_damaging(0.508) TCGA-75-5146-01 20 39989924 39989924 G T EMILIN3 Missense_Mutation p.P762Q 0.41 tolerated(0.08) benign(0.019) TCGA-75-5146-01 20 42965887 42965887 C G R3HDML Silent p.T30T 0.55 TCGA-75-5146-01 20 4705533 4705533 C T PRND Silent p.T112T 0.22 TCGA-75-5146-01 20 58514033 58514033 G A PPP1R3D 3'UTR 0.30 TCGA-75-5146-01 20 58514537 58514537 G A PPP1R3D Silent p.F150F 0.26 TCGA-75-5146-01 20 61511339 61511339 C T DIDO1 Missense_Mutation p.G1990D 0.31 benign(0.036) TCGA-75-5146-01 20 853683 853683 C A ANGPT4 Missense_Mutation p.G478C 0.29 deleterious(0) probably_damaging(1) TCGA-75-5146-01 21 44438272 44438272 G T PKNOX1 Missense_Mutation p.V218F 0.30 tolerated(0.08) probably_damaging(0.998) TCGA-75-5146-01 21 46047872 46047872 T A KRTAP10-9 Missense_Mutation p.C262S 0.25 deleterious(0.01) benign(0.415) TCGA-75-5146-01 21 46603320 46603320 C T ADARB1 Nonsense_Mutation p.R431* 0.11 TCGA-75-5146-01 22 16287667 16287667 C T POTEH Silent p.R73R 0.15 TCGA-75-5146-01 22 22869678 22869678 C A ZNF280A Missense_Mutation p.V93L 0.22 tolerated(0.52) benign(0.05) TCGA-75-5146-01 22 30886131 30886131 T G SEC14L4 Missense_Mutation p.Q395P 0.28 deleterious(0.01) benign(0.303) TCGA-75-5146-01 22 44277543 44277543 C A PNPLA5 Missense_Mutation p.W365L 0.39 deleterious(0) probably_damaging(0.999) TCGA-75-5146-01 2 109368064 109368064 G T RANBP2 Silent p.P512P 0.18 TCGA-75-5146-01 2 118854157 118854157 C T INSIG2 Missense_Mutation p.P9S 0.27 tolerated_low_confidence(0.52) benign(0) TCGA-75-5146-01 2 122165204 122165204 G - CLASP1 Frame_Shift_Del p.R838Afs*20 0.16 TCGA-75-5146-01 2 128913089 128913089 A G UGGT1 Missense_Mutation p.R722G 0.19 tolerated(0.25) benign(0.008) TCGA-75-5146-01 2 163256864 163256864 C A KCNH7 Missense_Mutation p.G748W 0.24 deleterious(0) probably_damaging(0.998) TCGA-75-5146-01 2 1680744 1680744 C G PXDN Missense_Mutation p.R268T 0.42 deleterious(0.01) possibly_damaging(0.673) TCGA-75-5146-01 2 1842936 1842936 A - MYT1L Frame_Shift_Del p.F1020Sfs*17 0.58 TCGA-75-5146-01 2 186672011 186672011 C A FSIP2 Missense_Mutation p.T6082K 0.24 probably_damaging(0.967) TCGA-75-5146-01 2 196750942 196750942 C A DNAH7 Missense_Mutation p.D1821Y 0.21 deleterious(0.02) probably_damaging(0.977) TCGA-75-5146-01 2 197964625 197964625 C A ANKRD44 Missense_Mutation p.G339C 0.24 deleterious(0) probably_damaging(1) TCGA-75-5146-01 2 21257763 21257763 C T APOB Missense_Mutation p.G277R 0.17 possibly_damaging(0.894) TCGA-75-5146-01 2 225739438 225739438 C A DOCK10 Missense_Mutation p.C321F 0.24 tolerated(0.7) benign(0.281) TCGA-75-5146-01 2 237415899 237415899 C A IQCA1 Splice_Site p.X4_splice 0.19 TCGA-75-5146-01 2 27463992 27463999 AGAACCTG TNCCTT CAD Frame_Shift_Del 0.28 TCGA-75-5146-01 2 49190832 49190832 G T FSHR Silent p.A376A 0.28 TCGA-75-5146-01 2 74687010 74687010 G C WBP1 Silent p.L61L 0.36 TCGA-75-5146-01 2 89399577 89399577 G A IGKV1-16 Silent p.T42T 0.40 TCGA-75-5146-01 3 123419547 123419547 A G MYLK Missense_Mutation p.M923T 0.38 deleterious(0) benign(0.01) TCGA-75-5146-01 3 143567219 143567219 C T SLC9A9 5'UTR 0.29 TCGA-75-5146-01 3 164780204 164780204 G T SI Silent p.I325I 0.23 TCGA-75-5146-01 3 173997044 173997044 T G NLGN1 Missense_Mutation p.F418C 0.44 deleterious(0) probably_damaging(0.998) TCGA-75-5146-01 3 190993099 190993099 C A UTS2B Missense_Mutation p.K92N 0.45 deleterious(0.03) benign(0.142) TCGA-75-5146-01 3 196664343 196664343 C G NCBP2 Intron 0.37 TCGA-75-5146-01 3 66465421 66465422 - A LRIG1 Frame_Shift_Ins p.L191Afs*121 0.36 TCGA-75-5146-01 4 162421230 162421230 G T FSTL5 Missense_Mutation p.Q466K 0.18 deleterious(0.01) possibly_damaging(0.824) TCGA-75-5146-01 4 183713936 183713936 G T TENM3 Silent p.T2037T 0.16 TCGA-75-5146-01 4 186272671 186272671 C G SNX25 Missense_Mutation p.L628V 0.22 tolerated(0.07) possibly_damaging(0.574) TCGA-75-5146-01 4 187584546 187584546 C A FAT1 Missense_Mutation p.A1163S 0.23 probably_damaging(0.999) TCGA-75-5146-01 4 189063558 189063558 C G TRIML1 Silent p.T219T 0.25 TCGA-75-5146-01 4 20493522 20493522 T C SLIT2 Missense_Mutation p.I305T 0.18 deleterious(0) probably_damaging(0.972) TCGA-75-5146-01 4 2834061 2834061 G T SH3BP2 Missense_Mutation p.L527F 0.40 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-75-5146-01 4 36230472 36230472 C A ARAP2 Missense_Mutation p.D213Y 0.45 deleterious_low_confidence(0.02) benign(0.229) TCGA-75-5146-01 4 38091623 38091623 C - TBC1D1 Frame_Shift_Del p.P709Hfs*44 0.32 TCGA-75-5146-01 4 62935842 62935842 A G LPHN3 Missense_Mutation p.N1209S 0.39 tolerated(0.09) possibly_damaging(0.902) TCGA-75-5146-01 4 7006648 7006648 G T TBC1D14 Nonsense_Mutation p.E450* 0.28 TCGA-75-5146-01 5 101592825 101592825 T G SLCO4C1 Missense_Mutation p.Y488S 0.30 deleterious(0.01) probably_damaging(0.974) TCGA-75-5146-01 5 135549152 135549152 G T TRPC7 Missense_Mutation p.L854M 0.35 tolerated(0.25) benign(0.005) TCGA-75-5146-01 5 140751709 140751709 A T PCDHGB3 Missense_Mutation p.E583V 0.35 deleterious(0.01) probably_damaging(0.943) TCGA-75-5146-01 5 140764230 140764230 G C PCDHGA7 Silent p.V588V 0.33 TCGA-75-5146-01 5 146780281 146780281 T G DPYSL3 Missense_Mutation p.M476L 0.39 tolerated(0.06) probably_damaging(0.965) TCGA-75-5146-01 5 151771964 151771964 G T NMUR2 Missense_Mutation p.H346N 0.41 tolerated(0.32) benign(0.035) TCGA-75-5146-01 5 156381546 156381546 C A TIMD4 Missense_Mutation p.D94Y 0.48 deleterious(0) probably_damaging(0.975) TCGA-75-5146-01 5 156649936 156649936 C A ITK Missense_Mutation p.P187T 0.41 tolerated(0.2) benign(0.3) TCGA-75-5146-01 5 178634669 178634669 G T ADAMTS2 Missense_Mutation p.L246I 0.23 tolerated(0.51) benign(0.003) TCGA-75-5146-01 5 182169 182169 C A PLEKHG4B Missense_Mutation p.P1183T 0.21 deleterious(0.04) possibly_damaging(0.504) TCGA-75-5146-01 5 36679962 36679962 G T SLC1A3 Missense_Mutation p.S365I 0.58 deleterious(0) probably_damaging(1) TCGA-75-5146-01 5 71491582 71491582 C A MAP1B Silent p.G800G 0.43 TCGA-75-5146-01 6 101075568 101075568 G A ASCC3 Nonsense_Mutation p.R1514* 0.24 TCGA-75-5146-01 6 102247541 102247541 T A GRIK2 Missense_Mutation p.Y324N 0.29 deleterious(0) probably_damaging(0.984) TCGA-75-5146-01 6 128176268 128176268 C T THEMIS Missense_Mutation p.G53S 0.37 tolerated(0.11) benign(0.199) TCGA-75-5146-01 6 132892437 132892437 T C TAAR6 Missense_Mutation p.V326A 0.34 tolerated(0.06) benign(0.021) TCGA-75-5146-01 6 154414418 154414418 C A OPRM1 Intron 0.22 TCGA-75-5146-01 6 169648565 169648565 C A THBS2 Nonsense_Mutation p.E186* 0.30 TCGA-75-5146-01 6 30303750 30303750 A C TRIM39 Missense_Mutation p.K260Q 0.23 tolerated(0.17) benign(0.024) TCGA-75-5146-01 6 33156932 33156932 A T COL11A2 Missense_Mutation p.V89D 0.40 possibly_damaging(0.84) TCGA-75-5146-01 6 33235055 33235056 - A VPS52 Frame_Shift_Ins p.T346Hfs*13 0.11 TCGA-75-5146-01 6 348916 348916 C A DUSP22 Intron 0.14 TCGA-75-5146-01 6 41712181 41712181 G A PGC Silent p.S94S 0.27 TCGA-75-5146-01 6 47775959 47775959 G C OPN5 Missense_Mutation p.A276P 0.25 deleterious(0.03) probably_damaging(0.998) TCGA-75-5146-01 6 49704164 49704164 C A CRISP3 Silent p.V66V 0.27 TCGA-75-5146-01 6 50681731 50681731 G - TFAP2D 5'UTR 0.31 TCGA-75-5146-01 6 52699031 52699031 G C GSTA5 Missense_Mutation p.L108V 0.28 tolerated(0.81) benign(0.001) TCGA-75-5146-01 6 53883845 53883845 G T MLIP Nonsense_Mutation p.E7* 0.14 TCGA-75-5146-01 6 55360355 55360355 G T HMGCLL1 Missense_Mutation p.D249E 0.43 deleterious(0) probably_damaging(1) TCGA-75-5146-01 6 56485422 56485422 G T DST Intron 0.24 TCGA-75-5146-01 6 64290116 64290116 A T PTP4A1 3'UTR 0.13 TCGA-75-5146-01 6 66205320 66205320 T A EYS 5'UTR 0.19 TCGA-75-5146-01 6 69685223 69685223 G T BAI3 Missense_Mutation p.L575F 0.25 deleterious(0.02) possibly_damaging(0.832) TCGA-75-5146-01 6 99856015 99856015 T C PNISR Missense_Mutation p.K269R 0.33 tolerated(0.16) benign(0.039) TCGA-75-5146-01 7 133824234 133824234 C T LRGUK Silent p.L151L 0.28 TCGA-75-5146-01 7 140481402 140481402 C A BRAF Missense_Mutation p.G469V 0.30 deleterious(0) probably_damaging(0.998) TCGA-75-5146-01 7 151945057 151945057 G A KMT2C Missense_Mutation p.P821L 0.08 probably_damaging(0.999) TCGA-75-5146-01 7 27140486 27140486 T C HOXA2 Silent p.T330T 0.44 TCGA-75-5146-01 7 27194740 27194740 T C HOXA7 Missense_Mutation p.I161V 0.34 tolerated(0.47) benign(0.114) TCGA-75-5146-01 7 57529162 57529162 C A ZNF716 Missense_Mutation p.A332D 0.52 deleterious(0.02) possibly_damaging(0.758) TCGA-75-5146-01 7 71036273 71036273 C A WBSCR17 Silent p.T322T 0.27 TCGA-75-5146-01 7 87168583 87168583 C A ABCB1 Splice_Site p.X799_splice 0.29 TCGA-75-5146-01 8 30889896 30889896 G T PURG Silent p.R135R 0.25 TCGA-75-5146-01 8 42591742 42591742 G T CHRNB3 Missense_Mutation p.W453L 0.21 deleterious(0) benign(0.354) TCGA-75-5146-01 8 42914258 42914258 T C FNTA Missense_Mutation p.I75T 0.42 deleterious(0.04) benign(0.204) TCGA-75-5146-01 8 52252232 52252232 G T PXDNL Missense_Mutation p.S1366R 0.23 tolerated(0.65) benign(0.001) TCGA-75-5146-01 8 55542556 55542556 C A RP1 Missense_Mutation p.H2038Q 0.23 tolerated(0.19) benign(0.012) TCGA-75-5146-01 8 623844 623844 G C ERICH1 Missense_Mutation p.Q170E 0.14 deleterious(0) possibly_damaging(0.825) TCGA-75-5146-01 8 73848519 73848519 G C KCNB2 Missense_Mutation p.R310T 0.32 deleterious(0) probably_damaging(1) TCGA-75-5146-01 8 99961644 99961644 C A OSR2 Missense_Mutation p.P155Q 0.20 deleterious(0.04) benign(0.001) TCGA-75-5146-01 9 128094322 128094322 G T GAPVD1 Missense_Mutation p.G764V 0.41 deleterious(0) probably_damaging(1) TCGA-75-5146-01 9 5050756 5050756 G C JAK2 Missense_Mutation p.G180A 0.37 deleterious(0.05) probably_damaging(0.999) TCGA-75-5146-01 X 155003948 155003948 C A SPRY3 Missense_Mutation p.H139N 0.36 tolerated(0.37) benign(0) TCGA-75-5146-01 X 48661577 48661577 G T HDAC6 Missense_Mutation p.V89L 0.83 deleterious(0) benign(0.391) TCGA-75-5146-01 X 52844156 52844156 A G XAGE5 Silent p.S73S 0.55 TCGA-75-5146-01 X 71492503 71492503 G A RPS4X 3'UTR 0.58 TCGA-75-5146-01 X 73063053 73063053 G T XIST RNA 0.40 TCGA-75-5146-01 X 77298209 77298209 G T ATP7A Missense_Mutation p.A1310S 0.58 deleterious(0) probably_damaging(1) TCGA-75-5146-01 X 86869526 86869526 G C KLHL4 Missense_Mutation p.G227A 0.72 deleterious(0.01) probably_damaging(1) TCGA-75-5146-01 Y 7193996 7193996 G T RN7SKP282 5'Flank 0.73 TCGA-75-5147-01 10 32983870 32983870 A G C10ORF68 Missense_Mutation p.E110G 0.09 tolerated(0.13) possibly_damaging(0.883) TCGA-75-5147-01 10 61946480 61946480 C A ANK3 Missense_Mutation p.S693I 0.17 probably_damaging(0.968) TCGA-75-5147-01 10 7621881 7621881 T A ITIH5 Missense_Mutation p.I419F 0.09 deleterious(0) probably_damaging(0.972) TCGA-75-5147-01 11 3681250 3681250 C T ART1 Silent p.S167S 0.07 TCGA-75-5147-01 11 4929450 4929450 C T OR51A7 Missense_Mutation p.P284L 0.28 deleterious(0.01) benign(0.309) TCGA-75-5147-01 11 55798207 55798207 G A OR5AS1 Missense_Mutation p.A105T 0.16 tolerated(0.09) benign(0.295) TCGA-75-5147-01 11 6942529 6942529 T C OR2D3 Silent p.V99V 0.35 TCGA-75-5147-01 11 70331681 70331681 C G SHANK2 Missense_Mutation p.D1574H 0.32 deleterious(0.01) possibly_damaging(0.861) TCGA-75-5147-01 12 133385015 133385015 G A GOLGA3 Missense_Mutation p.R214C 0.26 deleterious_low_confidence(0.03) probably_damaging(0.984) TCGA-75-5147-01 12 346415 346415 C G SLC6A13 Missense_Mutation p.G202A 0.07 deleterious(0) probably_damaging(1) TCGA-75-5147-01 14 23883310 23883310 G A MYH7 Missense_Mutation p.T1854M 0.30 deleterious(0) probably_damaging(0.948) TCGA-75-5147-01 15 39874029 39874029 G A THBS1 Splice_Site 0.12 TCGA-75-5147-01 15 45555437 45555437 G A SLC28A2 Silent p.T147T 0.39 TCGA-75-5147-01 15 74281502 74281502 A C STOML1 Missense_Mutation p.S113A 0.22 tolerated(0.13) benign(0.046) TCGA-75-5147-01 16 48145406 48145406 C T ABCC12 Missense_Mutation p.G741E 0.15 tolerated(0.52) benign(0.004) TCGA-75-5147-01 16 84213451 84213451 G C TAF1C Missense_Mutation p.A569G 0.45 deleterious(0.01) possibly_damaging(0.886) TCGA-75-5147-01 16 90028237 90028237 C A DEF8 Missense_Mutation p.R319S 0.18 deleterious(0.01) benign(0.266) TCGA-75-5147-01 17 73818612 73818612 C G UNK Missense_Mutation p.S631C 0.24 deleterious(0.01) probably_damaging(0.995) TCGA-75-5147-01 17 7578442 7578442 T C TP53 Missense_Mutation p.Y163C 0.29 deleterious(0) probably_damaging(0.999) TCGA-75-5147-01 19 10478970 10478970 C A TYK2 Splice_Site p.X106_splice 0.46 TCGA-75-5147-01 19 43348637 43348637 G A PSG10P RNA 0.04 TCGA-75-5147-01 1 160808748 160808748 C G CD244 Missense_Mutation p.K254N 0.24 deleterious(0.03) probably_damaging(0.992) TCGA-75-5147-01 1 186412962 186412962 A G PDC 3'UTR 0.35 TCGA-75-5147-01 1 22413237 22413237 G A CDC42 Missense_Mutation p.D122N 0.13 deleterious(0.05) benign(0.027) TCGA-75-5147-01 1 38033912 38033912 G T GNL2 Missense_Mutation p.Q639K 0.28 tolerated(1) benign(0.001) TCGA-75-5147-01 1 44086229 44086229 G A PTPRF Silent p.E1781E 0.30 TCGA-75-5147-01 1 89250394 89250394 C T PKN2 Missense_Mutation p.S353L 0.05 deleterious(0.05) benign(0.039) TCGA-75-5147-01 20 23858221 23858221 T G CST5 Missense_Mutation p.K89T 0.17 deleterious(0.01) benign(0.414) TCGA-75-5147-01 21 34897281 34897281 G A GART Silent p.L365L 0.32 TCGA-75-5147-01 22 41488932 41488932 C T EP300 5'UTR 0.22 TCGA-75-5147-01 2 44047199 44047199 A C ABCG5 Missense_Mutation p.F502V 0.31 deleterious(0) probably_damaging(0.938) TCGA-75-5147-01 2 48602224 48602224 G A FOXN2 Missense_Mutation p.R313H 0.14 deleterious(0) probably_damaging(0.912) TCGA-75-5147-01 2 99722034 99722034 G A TSGA10 Nonsense_Mutation p.R113* 0.26 TCGA-75-5147-01 3 126736667 126736668 - C PLXNA1 Frame_Shift_Ins p.L1199Pfs*77 0.28 TCGA-75-5147-01 3 142499837 142499837 G A TRPC1 Missense_Mutation p.R309H 0.29 deleterious(0) probably_damaging(0.996) TCGA-75-5147-01 3 157817685 157817685 A G SHOX2 Silent p.Y246Y 0.45 TCGA-75-5147-01 3 160135665 160135665 C G SMC4 Missense_Mutation p.S531C 0.19 tolerated(0.05) benign(0.021) TCGA-75-5147-01 3 164907274 164907274 C T SLITRK3 Missense_Mutation p.D449N 0.28 deleterious(0.01) possibly_damaging(0.601) TCGA-75-5147-01 4 25678030 25678031 - AA SLC34A2 Frame_Shift_Ins p.R578Qfs*24 0.33 TCGA-75-5147-01 5 110819778 110819778 C A CAMK4 Missense_Mutation p.H346N 0.05 tolerated(0.06) benign(0.118) TCGA-75-5147-01 5 149677343 149677343 C - ARSI Frame_Shift_Del p.A382Pfs*46 0.14 TCGA-75-5147-01 5 179045155 179045155 A T HNRNPH1 Missense_Mutation p.Y236N 0.16 tolerated(0.05) possibly_damaging(0.598) TCGA-75-5147-01 7 100190473 100190473 C T FBXO24 Missense_Mutation p.P247L 0.13 deleterious_low_confidence(0.03) benign(0.005) TCGA-75-5147-01 7 5427961 5427961 G A TNRC18 Silent p.P498P 0.33 TCGA-75-5147-01 7 94993257 94993257 G A PON3 Missense_Mutation p.L205F 0.06 deleterious(0.01) possibly_damaging(0.784) TCGA-75-5147-01 7 95665044 95665044 C T DYNC1I1 Silent p.Y465Y 0.31 TCGA-75-5147-01 8 113563024 113563024 C T CSMD3 Missense_Mutation p.M1480I 0.09 tolerated(1) possibly_damaging(0.88) TCGA-75-5147-01 9 6986546 6986546 G C KDM4C Missense_Mutation p.E519D 0.20 tolerated(0.11) benign(0.004) TCGA-75-5147-01 9 95609798 95609798 T A ZNF484 Missense_Mutation p.K426M 0.34 deleterious(0) probably_damaging(0.994) TCGA-75-5147-01 X 32382729 32382729 C G DMD Missense_Mutation p.K1708N 0.14 benign(0.016) TCGA-75-6203-01 10 75550013 75550013 C T ZSWIM8 Silent p.L302L 0.07 TCGA-75-6203-01 11 55703528 55703528 G T OR5I1 Missense_Mutation p.L117M 0.23 deleterious(0) possibly_damaging(0.767) TCGA-75-6203-01 11 92616397 92616397 G A FAT3 Missense_Mutation p.E4259K 0.12 benign(0.205) TCGA-75-6203-01 14 105413949 105413949 G A AHNAK2 Silent p.S2613S 0.15 TCGA-75-6203-01 14 21464765 21464765 G A METTL17 Missense_Mutation p.R387H 0.14 deleterious(0) probably_damaging(0.997) TCGA-75-6203-01 15 33765678 33765678 G A RYR3 Missense_Mutation p.C37Y 0.15 probably_damaging(0.998) TCGA-75-6203-01 16 14766485 14766485 C T PLA2G10 Silent p.P159P 0.13 TCGA-75-6203-01 19 1221326 1221326 T A STK11 Silent p.S283S 0.33 TCGA-75-6203-01 1 211092987 211092987 A G KCNH1 Missense_Mutation p.I486T 0.04 deleterious(0.02) probably_damaging(0.942) TCGA-75-6203-01 20 6022727 6022727 G A LRRN4 Silent p.T388T 0.16 TCGA-75-6203-01 2 179600640 179600640 C T TTN Missense_Mutation p.D4845N 0.12 TCGA-75-6203-01 3 35785377 35785377 C T ARPP21 Missense_Mutation p.T652M 0.07 deleterious(0.01) possibly_damaging(0.489) TCGA-75-6203-01 3 89456471 89456471 G A EPHA3 Silent p.A549A 0.05 TCGA-75-6203-01 4 96163597 96163597 T A UNC5C Missense_Mutation p.D364V 0.14 deleterious(0.01) possibly_damaging(0.781) TCGA-75-6203-01 5 112203238 112203238 A C SRP19 3'UTR 0.11 TCGA-75-6203-01 5 113699634 113699634 T - KCNN2 Frame_Shift_Del p.I174Sfs*11 0.11 TCGA-75-6203-01 7 16832472 16832474 CTT - AGR2 3'UTR 0.29 TCGA-75-6203-01 7 44579720 44579720 G A NPC1L1 Silent p.S92S 0.07 TCGA-75-6203-01 X 153228790 153228790 G A HCFC1 Missense_Mutation p.R200W 0.21 deleterious(0) probably_damaging(0.998) TCGA-75-6203-01 X 154088755 154088755 A T F8 Missense_Mutation p.S2284R 0.08 deleterious(0) probably_damaging(1) TCGA-75-6203-01 X 27839380 27839380 G A MAGEB10 5'UTR 0.12 TCGA-75-6205-01 10 124742438 124742438 C G PSTK Missense_Mutation p.L136V 0.10 tolerated(0.17) possibly_damaging(0.524) TCGA-75-6205-01 10 81319085 81319085 C T SFTPA2 Missense_Mutation p.G52E 0.05 deleterious(0) probably_damaging(1) TCGA-75-6205-01 11 46686502 46686502 C T ATG13 Missense_Mutation p.P331L 0.05 deleterious_low_confidence(0.03) benign(0.001) TCGA-75-6205-01 11 5363849 5363849 A G OR51B5 Silent p.L302L 0.08 TCGA-75-6205-01 11 62519814 62519814 G A ZBTB3 Silent p.A491A 0.10 TCGA-75-6205-01 12 31566417 31566417 G T DENND5B Silent p.L878L 0.08 TCGA-75-6205-01 12 55886450 55886450 A G OR6C68 Missense_Mutation p.I97V 0.04 tolerated_low_confidence(0.7) benign(0.004) TCGA-75-6205-01 12 56975221 56975221 G A RBMS2 Missense_Mutation p.G221R 0.08 deleterious(0) possibly_damaging(0.885) TCGA-75-6205-01 12 96059736 96059736 A G NTN4 Missense_Mutation p.S534P 0.09 deleterious(0) probably_damaging(0.962) TCGA-75-6205-01 13 31540436 31540436 C T TEX26 Nonsense_Mutation p.R183* 0.11 TCGA-75-6205-01 14 74876105 74876105 C G SYNDIG1L Missense_Mutation p.V115L 0.11 tolerated(0.26) benign(0.03) TCGA-75-6205-01 15 40913729 40913729 C G CASC5 Missense_Mutation p.Q449E 0.06 tolerated(0.08) benign(0.445) TCGA-75-6205-01 16 30365563 30365563 C A CD2BP2 Missense_Mutation p.E53D 0.16 tolerated(1) benign(0) TCGA-75-6205-01 17 47587854 47587854 G T NGFR Missense_Mutation p.A217S 0.10 tolerated(0.76) benign(0.001) TCGA-75-6205-01 18 3567562 3567562 T A DLGAP1 Missense_Mutation p.E661D 0.10 tolerated(0.64) benign(0.024) TCGA-75-6205-01 19 44933924 44933924 C G ZNF229 Silent p.V344V 0.07 TCGA-75-6205-01 19 52794138 52794138 G A ZNF766 Missense_Mutation p.R365K 0.19 tolerated(0.28) possibly_damaging(0.696) TCGA-75-6205-01 19 53644080 53644080 G C ZNF347 Missense_Mutation p.H668Q 0.11 tolerated(0.43) benign(0.038) TCGA-75-6205-01 19 58757682 58757682 G A ZNF544 Missense_Mutation p.E17K 0.05 tolerated(1) benign(0.039) TCGA-75-6205-01 19 58805974 58805974 A G ZNF8 Missense_Mutation p.N267S 0.19 tolerated(0.62) probably_damaging(0.996) TCGA-75-6205-01 1 201333427 201333427 G C TNNT2 Missense_Mutation p.A153G 0.22 deleterious(0.01) possibly_damaging(0.844) TCGA-75-6205-01 1 227843479 227843479 A C ZNF678 Missense_Mutation p.I510L 0.12 deleterious(0.01) benign(0.035) TCGA-75-6205-01 1 227920075 227920075 C G JMJD4 3'UTR 0.12 TCGA-75-6205-01 1 35476084 35476084 G A ZMYM6 Nonsense_Mutation p.R486* 0.05 TCGA-75-6205-01 1 40703541 40703541 C G RLF Missense_Mutation p.T1056R 0.09 tolerated(0.08) possibly_damaging(0.677) TCGA-75-6205-01 1 53543418 53543418 T A PODN Missense_Mutation p.L315Q 0.07 deleterious(0) probably_damaging(0.967) TCGA-75-6205-01 20 37546833 37546833 G A PPP1R16B Missense_Mutation p.E410K 0.08 tolerated(0.47) benign(0.011) TCGA-75-6205-01 20 39725971 39725971 A G TOP1 Missense_Mutation p.D281G 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-75-6205-01 22 22735488 22735488 C A IGLV1-44 Missense_Mutation p.S42Y 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.491) TCGA-75-6205-01 2 1263181 1263181 C T SNTG2 Missense_Mutation p.H349Y 0.05 deleterious(0.02) benign(0.001) TCGA-75-6205-01 2 219563892 219563892 C T STK36 Missense_Mutation p.R1209W 0.10 deleterious(0) probably_damaging(1) TCGA-75-6205-01 2 27656125 27656125 G T NRBP1 5'UTR 0.26 TCGA-75-6205-01 2 32475459 32475459 G A NLRC4 Missense_Mutation p.R492W 0.08 deleterious(0.01) benign(0.015) TCGA-75-6205-01 3 121544968 121544968 A C IQCB1 Missense_Mutation p.L108R 0.31 deleterious(0) probably_damaging(0.999) TCGA-75-6205-01 4 140058862 140058862 T A ELF2 5'UTR 0.11 TCGA-75-6205-01 4 76442122 76442122 G C THAP6 Missense_Mutation p.S74T 0.06 tolerated(1) benign(0.002) TCGA-75-6205-01 5 141018407 141018407 G C RELL2 Missense_Mutation p.R77P 0.04 deleterious(0) benign(0.356) TCGA-75-6205-01 5 156589943 156589943 G A FAM71B Missense_Mutation p.H445Y 0.05 deleterious(0.01) possibly_damaging(0.559) TCGA-75-6205-01 5 17354181 17354181 A G CTD-2139B15.2 Intron 0.12 TCGA-75-6205-01 5 33441173 33441173 C T TARS 5'UTR 0.19 TCGA-75-6205-01 5 64748738 64748738 T G ADAMTS6 Silent p.T213T 0.05 TCGA-75-6205-01 5 66400349 66400349 C T MAST4 Silent p.I434I 0.10 TCGA-75-6205-01 5 96503577 96503577 C T RIOK2 Missense_Mutation p.G331R 0.05 tolerated(0.5) benign(0.001) TCGA-75-6205-01 6 167417806 167417806 G A FGFR1OP Missense_Mutation p.A119T 0.19 tolerated(0.19) benign(0.223) TCGA-75-6205-01 6 168299086 168299086 G A MLLT4 Missense_Mutation p.A507T 0.15 tolerated(0.55) benign(0.005) TCGA-75-6205-01 6 76023514 76023514 A G FILIP1 Silent p.S678S 0.06 TCGA-75-6205-01 7 100284038 100284038 G C GIGYF1 Missense_Mutation p.A238G 0.06 tolerated(0.11) unknown(0) TCGA-75-6205-01 7 116412024 116412024 C G MET Nonsense_Mutation p.Y1021* 0.14 TCGA-75-6205-01 7 2303976 2303978 TGG - SNX8 In_Frame_Del p.A246_I247delinsV 0.17 TCGA-75-6205-01 7 91870326 91870326 A T KRIT1 Silent p.P81P 0.23 TCGA-75-6205-01 8 132052028 132052028 C T ADCY8 Silent p.V184V 0.08 TCGA-75-6205-01 8 132052081 132052081 C G ADCY8 Missense_Mutation p.E167Q 0.12 deleterious(0) probably_damaging(0.968) TCGA-75-6205-01 8 144733396 144733396 A T ZNF623 Missense_Mutation p.I452F 0.05 deleterious(0) probably_damaging(0.954) TCGA-75-6205-01 9 35608495 35608495 C T TESK1 Missense_Mutation p.T330I 0.28 tolerated(0.17) benign(0.001) TCGA-75-6205-01 9 79634826 79634826 T C FOXB2 Missense_Mutation p.F86L 0.11 deleterious(0.03) unknown(0) TCGA-75-6205-01 X 100274014 100274014 G A TRMT2B Missense_Mutation p.T445M 0.05 deleterious(0.01) possibly_damaging(0.616) TCGA-75-6205-01 X 112024327 112024327 G T AMOT Missense_Mutation p.Q754K 0.07 unknown(0) TCGA-75-6205-01 X 154456758 154456758 G T VBP1 Missense_Mutation p.W126C 0.06 deleterious(0) probably_damaging(1) TCGA-75-6205-01 X 49955748 49955748 A G AKAP4 Missense_Mutation p.V807A 0.05 deleterious(0.01) probably_damaging(0.997) TCGA-75-6205-01 X 64722914 64722914 T C ZC3H12B Missense_Mutation p.M779T 0.13 tolerated(0.32) benign(0.035) TCGA-75-6205-01 X 75004327 75004327 A C MAGEE2 Missense_Mutation p.I187S 0.11 deleterious(0) probably_damaging(0.996) TCGA-75-6206-01 10 5948121 5948121 G T FBXO18 Missense_Mutation p.M144I 0.15 tolerated(0.25) benign(0.005) TCGA-75-6206-01 10 90428413 90428413 G T LIPF Missense_Mutation p.D118Y 0.40 deleterious(0) probably_damaging(1) TCGA-75-6206-01 11 113126630 113126630 G A NCAM1 Silent p.Q669Q 0.33 TCGA-75-6206-01 11 116661719 116661719 G T APOA5 Missense_Mutation p.P76T 0.24 deleterious(0.02) benign(0.237) TCGA-75-6206-01 11 4661441 4661441 C T OR51D1 Missense_Mutation p.H141Y 0.33 tolerated(0.15) benign(0.011) TCGA-75-6206-01 11 55944912 55944912 G A OR5J2 Silent p.V273V 0.23 TCGA-75-6206-01 11 67808820 67808820 C T TCIRG1 Missense_Mutation p.R28W 0.27 deleterious(0) possibly_damaging(0.773) TCGA-75-6206-01 11 76826529 76826529 G T CAPN5 Missense_Mutation p.R263L 0.22 deleterious(0.01) probably_damaging(1) TCGA-75-6206-01 12 106460869 106460869 C A NUAK1 Missense_Mutation p.S566I 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-75-6206-01 12 123481893 123481893 T A PITPNM2 Missense_Mutation p.D484V 0.15 deleterious(0.01) benign(0.11) TCGA-75-6206-01 12 126138328 126138328 A G TMEM132B Missense_Mutation p.Q770R 0.31 deleterious(0) probably_damaging(0.956) TCGA-75-6206-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.43 deleterious(0.04) possibly_damaging(0.506) TCGA-75-6206-01 12 86373688 86373688 C T MGAT4C Silent p.L272L 0.32 TCGA-75-6206-01 13 38154715 38154715 T C POSTN Silent p.K504K 0.69 TCGA-75-6206-01 13 67800037 67800037 C T PCDH9 Missense_Mutation p.A846T 0.08 tolerated(0.09) benign(0.377) TCGA-75-6206-01 14 36780791 36780791 G A MBIP Missense_Mutation p.R260W 0.06 deleterious(0) probably_damaging(1) TCGA-75-6206-01 14 57741518 57741518 A G AP5M1 Missense_Mutation p.I211V 0.27 tolerated(1) benign(0.004) TCGA-75-6206-01 14 64421624 64421624 G A SYNE2 Missense_Mutation p.E260K 0.33 possibly_damaging(0.725) TCGA-75-6206-01 15 24924080 24924080 C T NPAP1 Silent p.F1022F 0.21 TCGA-75-6206-01 15 34123253 34123253 C T RYR3 Silent p.V3808V 0.35 TCGA-75-6206-01 15 35085472 35085472 G A ACTC1 Missense_Mutation p.S143F 0.29 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-75-6206-01 15 91455886 91455886 G A MAN2A2 Missense_Mutation p.E821K 0.20 tolerated(0.15) benign(0.014) TCGA-75-6206-01 16 31087948 31087948 C T ZNF646 Silent p.G101G 0.29 TCGA-75-6206-01 16 75513263 75513263 C G CHST6 Missense_Mutation p.R155P 0.42 tolerated(0.24) possibly_damaging(0.889) TCGA-75-6206-01 17 10212755 10212755 C G MYH13 Splice_Site p.X1656_splice 0.75 TCGA-75-6206-01 17 15877995 15877995 A T ADORA2B Missense_Mutation p.Y113F 0.30 deleterious(0) probably_damaging(0.95) TCGA-75-6206-01 17 26646231 26646231 C G TMEM97 5'UTR 0.20 TCGA-75-6206-01 17 39645680 39645680 G C KRT36 Missense_Mutation p.T146S 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-75-6206-01 17 42287499 42287499 C T UBTF Missense_Mutation p.R540Q 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-75-6206-01 17 62018408 62018408 C A SCN4A Missense_Mutation p.R1745L 0.39 deleterious(0.02) possibly_damaging(0.877) TCGA-75-6206-01 17 78389003 78389003 G A ENDOV Silent p.L3L 0.25 TCGA-75-6206-01 17 79620209 79620209 G A PDE6G Missense_Mutation p.P43S 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-75-6206-01 18 28968847 28968847 G T DSG4 Missense_Mutation p.R128L 0.22 deleterious(0.04) benign(0.185) TCGA-75-6206-01 18 40854329 40854329 C A SYT4 Missense_Mutation p.S22I 0.23 deleterious(0) possibly_damaging(0.541) TCGA-75-6206-01 18 47800019 47800019 G C MBD1 Missense_Mutation p.T454S 0.33 tolerated_low_confidence(0.1) possibly_damaging(0.82) TCGA-75-6206-01 18 50278474 50278474 G C DCC Missense_Mutation p.D48H 0.55 deleterious(0) probably_damaging(0.995) TCGA-75-6206-01 18 70526114 70526114 G T NETO1 Missense_Mutation p.A139D 0.38 deleterious(0) possibly_damaging(0.899) TCGA-75-6206-01 19 10602938 10602938 C A KEAP1 Missense_Mutation p.V214L 0.67 deleterious(0.01) possibly_damaging(0.658) TCGA-75-6206-01 19 11685955 11685955 T C ACP5 Missense_Mutation p.Y283C 0.66 tolerated(0.09) possibly_damaging(0.859) TCGA-75-6206-01 19 17264820 17264820 G T MYO9B Nonsense_Mutation p.E348* 0.58 TCGA-75-6206-01 19 17264821 17264821 A T MYO9B Missense_Mutation p.E348V 0.57 deleterious(0) possibly_damaging(0.901) TCGA-75-6206-01 19 17750267 17750267 C T UNC13A Missense_Mutation p.S975N 0.80 deleterious(0) possibly_damaging(0.87) TCGA-75-6206-01 19 32845460 32845460 C T ZNF507 Missense_Mutation p.S575L 0.43 tolerated(0.12) possibly_damaging(0.879) TCGA-75-6206-01 19 41447993 41447993 A T AC092071.1 5'Flank 0.15 TCGA-75-6206-01 19 44419176 44419176 A G ZNF45 Silent p.L138L 0.26 TCGA-75-6206-01 19 47424435 47424435 C G ARHGAP35 Missense_Mutation p.L835V 0.23 tolerated(1) probably_damaging(0.95) TCGA-75-6206-01 19 53304633 53304633 C A ZNF28 Missense_Mutation p.Q155H 0.25 tolerated(0.13) benign(0.023) TCGA-75-6206-01 19 53995855 53995855 G T ZNF813 3'UTR 0.42 TCGA-75-6206-01 1 103427811 103427811 C A COL11A1 Missense_Mutation p.G1012V 0.68 unknown(0) TCGA-75-6206-01 1 103484401 103484401 T A COL11A1 Missense_Mutation p.E441D 0.71 probably_damaging(0.999) TCGA-75-6206-01 1 155270722 155270722 C T PKLR Intron 0.33 TCGA-75-6206-01 1 16242663 16242663 G T SPEN Missense_Mutation p.R428S 0.24 probably_damaging(0.989) TCGA-75-6206-01 1 168054736 168054736 C G GPR161 3'UTR 0.29 TCGA-75-6206-01 1 171501586 171501586 A G PRRC2C Silent p.Q451Q 0.26 TCGA-75-6206-01 1 173556830 173556830 C A SLC9C2 Missense_Mutation p.R166L 0.21 tolerated(0.69) benign(0.009) TCGA-75-6206-01 1 177935061 177935061 G C SEC16B Missense_Mutation p.H127D 0.20 deleterious(0) benign(0.398) TCGA-75-6206-01 1 179316735 179316735 G T SOAT1 Missense_Mutation p.G373V 0.17 deleterious(0) probably_damaging(0.956) TCGA-75-6206-01 1 208252776 208252776 T A PLXNA2 Silent p.A805A 0.24 TCGA-75-6206-01 1 211280696 211280696 C G KCNH1 Missense_Mutation p.A35P 0.11 deleterious(0) probably_damaging(1) TCGA-75-6206-01 1 211652496 211652496 G T RD3 Missense_Mutation p.A157E 0.36 tolerated(0.17) benign(0.443) TCGA-75-6206-01 1 21167521 21167521 C A EIF4G3 Nonsense_Mutation p.E1247* 0.47 TCGA-75-6206-01 1 247588030 247588030 G T NLRP3 Missense_Mutation p.G429C 0.18 deleterious(0) probably_damaging(0.977) TCGA-75-6206-01 1 248059460 248059460 G T OR2W3 Missense_Mutation p.S191I 0.28 deleterious(0) benign(0.317) TCGA-75-6206-01 1 75037634 75037634 G T C1orf173 Missense_Mutation p.L1254M 0.61 tolerated(0.21) benign(0.02) TCGA-75-6206-01 1 82456731 82456731 G T LPHN2 Missense_Mutation p.G1372C 0.80 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-75-6206-01 22 21064219 21064219 G A PI4KA Silent p.R2050R 0.06 TCGA-75-6206-01 22 23263607 23263607 G T IGLJ7 Silent p.%3D 0.29 TCGA-75-6206-01 22 26936823 26936823 G A TPST2 Silent p.I258I 0.11 TCGA-75-6206-01 22 26936841 26936841 G C TPST2 Missense_Mutation p.I252M 0.16 deleterious(0) probably_damaging(0.989) TCGA-75-6206-01 22 39482368 39482368 G T APOBEC3G Missense_Mutation p.D274Y 0.14 tolerated(0.09) benign(0.12) TCGA-75-6206-01 2 141707953 141707953 C A LRP1B Missense_Mutation p.G996V 0.41 probably_damaging(0.998) TCGA-75-6206-01 2 18758102 18758102 C T NT5C1B Missense_Mutation p.A421T 0.27 tolerated(0.17) possibly_damaging(0.764) TCGA-75-6206-01 2 85866372 85866372 A C USP39 Missense_Mutation p.E381A 0.24 tolerated(0.13) possibly_damaging(0.843) TCGA-75-6206-01 3 113729802 113729802 C A KIAA1407 Missense_Mutation p.Q410H 0.26 deleterious(0.02) benign(0.093) TCGA-75-6206-01 3 14170966 14170966 C T TMEM43 Missense_Mutation p.P23S 0.29 deleterious(0.02) probably_damaging(0.973) TCGA-75-6206-01 3 32859513 32859513 C G TRIM71 5'UTR 0.50 TCGA-75-6206-01 3 32859538 32859538 C G TRIM71 5'UTR 0.43 TCGA-75-6206-01 4 122723066 122723066 G T EXOSC9 Nonsense_Mutation p.G51* 0.18 TCGA-75-6206-01 4 164272501 164272502 - A NPY5R Frame_Shift_Ins p.R362Efs*19 0.21 TCGA-75-6206-01 4 183676258 183676258 C A TENM3 Missense_Mutation p.P1580T 0.51 tolerated(0.25) possibly_damaging(0.908) TCGA-75-6206-01 4 183676259 183676259 C A TENM3 Missense_Mutation p.P1580H 0.50 deleterious(0.01) probably_damaging(0.953) TCGA-75-6206-01 4 53728630 53728630 C G RASL11B 5'UTR 0.62 TCGA-75-6206-01 4 70504968 70504968 T A UGT2A2 Missense_Mutation p.N131Y 0.55 tolerated(1) benign(0.098) TCGA-75-6206-01 5 10381944 10381944 A T MARCH6 Missense_Mutation p.I75F 0.52 tolerated(0.23) benign(0.323) TCGA-75-6206-01 5 127488427 127488427 C G SLC12A2 Missense_Mutation p.L765V 0.39 tolerated(0.52) probably_damaging(0.976) TCGA-75-6206-01 5 140208303 140208303 C G PCDHA6 Missense_Mutation p.N209K 0.38 tolerated_low_confidence(0.37) benign(0.016) TCGA-75-6206-01 5 140208338 140208338 A T PCDHA6 Missense_Mutation p.E221V 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.722) TCGA-75-6206-01 5 152870284 152870284 A T GRIA1 5'Flank 0.26 TCGA-75-6206-01 5 156349220 156349220 C A TIMD4 Missense_Mutation p.G301V 0.20 tolerated(0.3) benign(0.015) TCGA-75-6206-01 5 156349221 156349221 C T TIMD4 Missense_Mutation p.G301R 0.18 tolerated(0.47) benign(0.001) TCGA-75-6206-01 5 156915334 156915334 G T ADAM19 Nonsense_Mutation p.S830* 0.21 TCGA-75-6206-01 5 35965591 35965591 C T UGT3A1 Nonsense_Mutation p.W247* 0.22 TCGA-75-6206-01 5 5463318 5463318 A G KIAA0947 Missense_Mutation p.N1291D 0.47 tolerated(0.25) benign(0.001) TCGA-75-6206-01 5 74032775 74032775 G C GFM2 Silent p.S452S 0.50 TCGA-75-6206-01 5 75979701 75979701 A T IQGAP2 Silent p.I1288I 0.26 TCGA-75-6206-01 6 33145920 33145920 G T COL11A2 Missense_Mutation p.P535T 0.13 possibly_damaging(0.803) TCGA-75-6206-01 6 35086069 35086069 C A TCP11 Nonsense_Mutation p.E510* 0.38 TCGA-75-6206-01 7 127954875 127954875 C G RBM28 Missense_Mutation p.D663H 0.22 deleterious(0) probably_damaging(0.959) TCGA-75-6206-01 7 154876113 154876113 C T HTR5A Silent p.N330N 0.23 TCGA-75-6206-01 8 100147266 100147266 C G VPS13B Missense_Mutation p.F442L 0.19 deleterious(0) possibly_damaging(0.483) TCGA-75-6206-01 8 104453721 104453721 G T DCAF13 Missense_Mutation p.Q527H 0.18 deleterious(0) possibly_damaging(0.693) TCGA-75-6206-01 8 113668455 113668455 T A CSMD3 Missense_Mutation p.S978C 0.59 deleterious(0) probably_damaging(0.989) TCGA-75-6206-01 8 21843107 21843107 A G XPO7 Silent p.T494T 0.62 TCGA-75-6206-01 8 3059239 3059239 C A CSMD1 Nonsense_Mutation p.G1665* 0.82 TCGA-75-6206-01 9 100380096 100380096 G A TSTD2 Silent p.P182P 0.44 TCGA-75-6206-01 9 35660428 35660428 G C CCDC107 Missense_Mutation p.E97Q 0.35 deleterious(0.01) probably_damaging(0.969) TCGA-75-6206-01 9 35679284 35679284 C T CA9 Missense_Mutation p.A337V 0.47 tolerated(0.29) possibly_damaging(0.594) TCGA-75-6206-01 9 40772845 40772845 C T ZNF658 Silent p.K810K 0.39 TCGA-75-6206-01 X 120009412 120009412 G C CT47B1 Missense_Mutation p.S38C 0.50 deleterious(0.03) probably_damaging(0.983) TCGA-75-6206-01 X 77912815 77912815 G T ZCCHC5 Missense_Mutation p.S368Y 0.57 tolerated(0.08) possibly_damaging(0.87) TCGA-75-6207-01 11 4790747 4790747 T C OR51F1 Missense_Mutation p.Y134C 0.21 deleterious(0) possibly_damaging(0.637) TCGA-75-6207-01 11 93090193 93090193 A G CCDC67 Missense_Mutation p.Q94R 0.36 deleterious(0.04) benign(0.027) TCGA-75-6207-01 11 93779059 93779059 G A HEPHL1 Missense_Mutation p.V131I 0.19 tolerated(0.12) possibly_damaging(0.831) TCGA-75-6207-01 12 14943683 14943683 C A WBP11 Missense_Mutation p.G339V 0.19 deleterious_low_confidence(0.03) unknown(0) TCGA-75-6207-01 12 53455027 53455027 G C TENC1 Missense_Mutation p.D1123H 0.33 deleterious(0) probably_damaging(0.952) TCGA-75-6207-01 12 86373716 86373716 A T MGAT4C Missense_Mutation p.L263H 0.43 deleterious(0) probably_damaging(1) TCGA-75-6207-01 13 51855250 51855250 C A FAM124A Missense_Mutation p.A536D 0.23 tolerated_low_confidence(0.06) benign(0.024) TCGA-75-6207-01 14 104642531 104642531 G A KIF26A Missense_Mutation p.D1136N 0.21 tolerated(0.07) benign(0.003) TCGA-75-6207-01 14 105414090 105414090 C A AHNAK2 Silent p.L2566L 0.32 TCGA-75-6207-01 14 106320729 106320729 C T IGHM Missense_Mutation p.V361I 0.19 tolerated(0.56) benign(0.013) TCGA-75-6207-01 14 42356002 42356002 G T LRFN5 Missense_Mutation p.L58F 0.40 deleterious(0) probably_damaging(1) TCGA-75-6207-01 14 68042651 68042651 C T PLEKHH1 Missense_Mutation p.H761Y 0.29 deleterious(0.05) benign(0.103) TCGA-75-6207-01 14 88904759 88904759 A C SPATA7 Missense_Mutation p.D598A 0.27 tolerated_low_confidence(0.05) possibly_damaging(0.904) TCGA-75-6207-01 15 35274619 35274619 G T ZNF770 Silent p.I339I 0.18 TCGA-75-6207-01 16 20327347 20327347 G T GP2 Missense_Mutation p.Q481K 0.15 tolerated(0.16) benign(0.016) TCGA-75-6207-01 17 39394662 39394662 G T KRTAP9-8 Missense_Mutation p.S120I 0.36 deleterious(0.02) probably_damaging(0.972) TCGA-75-6207-01 17 39406331 39406331 G T KRTAP9-4 Missense_Mutation p.S120I 0.07 tolerated(0.08) probably_damaging(0.98) TCGA-75-6207-01 17 7578275 7578275 G A TP53 Nonsense_Mutation p.Q192* 0.48 TCGA-75-6207-01 19 1625599 1625599 G A TCF3 Missense_Mutation p.R159W 0.27 deleterious(0) probably_damaging(0.999) TCGA-75-6207-01 19 22363197 22363197 C G ZNF676 Missense_Mutation p.R441T 0.31 tolerated(0.19) benign(0.009) TCGA-75-6207-01 19 46914343 46914343 A G CCDC8 3'UTR 0.56 TCGA-75-6207-01 19 58005450 58005450 A T ZNF419 Missense_Mutation p.M510L 0.32 tolerated_low_confidence(0.38) benign(0.037) TCGA-75-6207-01 1 145021125 145021125 C T RP11-326G21.1 3'Flank 0.07 TCGA-75-6207-01 1 154942831 154942831 G A SHC1 Silent p.L58L 0.07 TCGA-75-6207-01 1 155891353 155891353 T C KIAA0907 Missense_Mutation p.Y360C 0.18 deleterious(0.01) possibly_damaging(0.785) TCGA-75-6207-01 1 159900162 159900162 C T IGSF9 Silent p.P627P 0.23 TCGA-75-6207-01 1 169512220 169512220 A G F5 Missense_Mutation p.V703A 0.05 tolerated(1) benign(0.002) TCGA-75-6207-01 1 171510842 171510842 C T PRRC2C Nonsense_Mutation p.R1411* 0.21 TCGA-75-6207-01 1 185897775 185897775 G A HMCN1 Missense_Mutation p.A510T 0.37 probably_damaging(0.953) TCGA-75-6207-01 1 192778207 192778207 A T RGS2 Missense_Mutation p.Q2H 0.30 deleterious_low_confidence(0.01) benign(0.085) TCGA-75-6207-01 1 223178044 223178044 T G DISP1 Missense_Mutation p.V1102G 0.57 deleterious(0) probably_damaging(0.999) TCGA-75-6207-01 1 26012972 26012972 G C MAN1C1 Missense_Mutation p.M194I 0.26 deleterious(0.01) benign(0.326) TCGA-75-6207-01 1 27057727 27057727 C T ARID1A Nonsense_Mutation p.Q479* 0.49 TCGA-75-6207-01 1 68912489 68912489 A G RPE65 Missense_Mutation p.F50S 0.45 deleterious(0) probably_damaging(1) TCGA-75-6207-01 20 31996581 31996581 C T SNTA1 Missense_Mutation p.E451K 0.37 deleterious(0) probably_damaging(0.922) TCGA-75-6207-01 20 33433115 33433115 G A GGT7 3'UTR 0.24 TCGA-75-6207-01 20 42814998 42814998 G A JPH2 Silent p.D116D 0.22 TCGA-75-6207-01 22 32754215 32754215 C T RFPL3 Silent p.L53L 0.44 TCGA-75-6207-01 2 168100136 168100136 G C XIRP2 Missense_Mutation p.R745T 0.31 probably_damaging(0.967) TCGA-75-6207-01 2 29456482 29456482 A G ALK Silent p.H812H 0.07 TCGA-75-6207-01 3 124045016 124045016 C A KALRN Missense_Mutation p.Q426K 0.28 tolerated(0.13) benign(0.051) TCGA-75-6207-01 3 164906262 164906262 C T SLITRK3 Missense_Mutation p.G786E 0.36 tolerated(1) benign(0.025) TCGA-75-6207-01 3 19479843 19479843 G A KCNH8 Missense_Mutation p.M455I 0.42 deleterious(0) probably_damaging(0.996) TCGA-75-6207-01 4 113362399 113362399 G T ALPK1 3'UTR 0.04 TCGA-75-6207-01 4 25677981 25677983 CGT - SLC34A2 In_Frame_Del p.V563del 0.43 TCGA-75-6207-01 4 96075720 96075720 C A BMPR1B Missense_Mutation p.L499I 0.16 tolerated(0.36) possibly_damaging(0.797) TCGA-75-6207-01 5 132269967 132269967 C T AFF4 Missense_Mutation p.E264K 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-75-6207-01 5 140502489 140502489 A G PCDHB4 Silent p.K303K 0.34 TCGA-75-6207-01 5 161324267 161324267 A G GABRA1 Missense_Mutation p.T404A 0.06 tolerated(0.81) benign(0.042) TCGA-75-6207-01 5 6663010 6663010 C T SRD5A1 Missense_Mutation p.S215F 0.11 deleterious(0) probably_damaging(0.997) TCGA-75-6207-01 5 6663031 6663031 C T SRD5A1 Missense_Mutation p.A222V 0.12 deleterious(0) probably_damaging(0.996) TCGA-75-6207-01 5 96430380 96430380 G A LIX1 3'UTR 0.16 TCGA-75-6207-01 6 116757414 116757414 G T DSE Nonsense_Mutation p.E595* 0.23 TCGA-75-6207-01 6 146275957 146275957 T C SHPRH Missense_Mutation p.M168V 0.52 tolerated_low_confidence(0.76) benign(0) TCGA-75-6207-01 6 152510398 152510398 G A SYNE1 Silent p.L7764L 0.05 TCGA-75-6207-01 6 160169299 160169299 T A WTAP Missense_Mutation p.I117N 0.44 deleterious(0) possibly_damaging(0.672) TCGA-75-6207-01 6 31560502 31560502 G T NCR3 5'UTR 0.15 TCGA-75-6207-01 6 32918372 32918372 T C HLA-DMA Silent p.L99L 0.34 TCGA-75-6207-01 7 101200875 101200875 C T COL26A1 3'UTR 0.13 TCGA-75-6207-01 7 142250829 142250829 G T TRBV6-4 Missense_Mutation p.T73N 0.21 tolerated(0.6) benign(0.006) TCGA-75-6207-01 7 44150680 44150680 G T AEBP1 Intron 0.36 TCGA-75-6207-01 7 44733543 44733543 C T OGDH Silent p.Y485Y 0.06 TCGA-75-6207-01 7 55242465 55242479 GGAATTAAGAGAAGC - EGFR In_Frame_Del p.E746_A750del 0.25 TCGA-75-6207-01 7 6370449 6370488 ACTCTGTTGGAGCAGGGAACAAACCCACGGCTGTGCTCGG - FAM220A Frame_Shift_Del p.P100Vfs*92 0.36 TCGA-75-6207-01 7 6786674 6786674 C T PMS2CL RNA 0.07 TCGA-75-6207-01 7 82544173 82544173 C T PCLO Missense_Mutation p.A4377T 0.31 unknown(0) TCGA-75-6207-01 7 97949602 97949602 G C BAIAP2L1 Missense_Mutation p.L75V 0.23 deleterious(0) probably_damaging(0.999) TCGA-75-6207-01 8 104442853 104442853 G A DCAF13 Missense_Mutation p.G365E 0.27 deleterious(0) possibly_damaging(0.651) TCGA-75-6207-01 8 143999137 143999137 G T CYP11B2 Silent p.A40A 0.19 TCGA-75-6207-01 8 145626466 145626466 C T CPSF1 Missense_Mutation p.G131R 0.13 deleterious(0) probably_damaging(0.999) TCGA-75-6207-01 8 1497387 1497387 C A DLGAP2 Silent p.G176G 0.44 TCGA-75-6207-01 8 49832627 49832627 G A SNAI2 Silent p.C151C 0.41 TCGA-75-6207-01 8 53852850 53852850 C T NPBWR1 Missense_Mutation p.T128I 0.30 deleterious(0) benign(0.411) TCGA-75-6207-01 8 68931805 68931805 G C PREX2 Missense_Mutation p.D79H 0.16 deleterious(0) possibly_damaging(0.628) TCGA-75-6207-01 8 73849192 73849192 T C KCNB2 Silent p.H534H 0.05 TCGA-75-6207-01 9 33998823 33998823 C T UBAP2 Missense_Mutation p.D47N 0.12 deleterious(0) probably_damaging(0.962) TCGA-75-6207-01 9 35957732 35957732 C G OR2S2 Missense_Mutation p.D122H 0.37 deleterious(0) probably_damaging(1) TCGA-75-6207-01 9 35958141 35958141 G T OR2S2 5'UTR 0.33 TCGA-75-6207-01 9 5335488 5335488 T A RLN1 Silent p.P107P 0.07 TCGA-75-6207-01 9 6007361 6007361 C G KIAA2026 Missense_Mutation p.E143Q 0.47 deleterious(0.02) possibly_damaging(0.587) TCGA-75-6207-01 9 6007387 6007387 C T KIAA2026 Missense_Mutation p.G134E 0.46 tolerated(0.92) benign(0.009) TCGA-75-6207-01 9 6007613 6007613 C G KIAA2026 Missense_Mutation p.E59Q 0.37 tolerated_low_confidence(0.07) benign(0.022) TCGA-75-6207-01 X 107976069 107976069 G C IRS4 Missense_Mutation p.A1169G 0.83 deleterious_low_confidence(0.01) unknown(0) TCGA-75-6207-01 X 140994562 140994562 C G MAGEC1 Missense_Mutation p.L458V 0.43 tolerated_low_confidence(0.2) benign(0.364) TCGA-75-6207-01 X 149901147 149901147 C A MTMR1 Nonsense_Mutation p.S334* 0.75 TCGA-75-6207-01 X 68381893 68381893 G A PJA1 Missense_Mutation p.P397S 0.06 tolerated(0.1) benign(0.244) TCGA-75-6207-01 X 72433189 72433189 G A NAP1L2 Silent p.T380T 0.76 TCGA-75-6211-01 10 100995342 100995342 G C HPSE2 Missense_Mutation p.T73R 0.11 tolerated(0.55) possibly_damaging(0.451) TCGA-75-6211-01 10 104404673 104404673 C T TRIM8 Missense_Mutation p.P100L 0.44 deleterious(0) probably_damaging(0.998) TCGA-75-6211-01 10 11505455 11505455 G T USP6NL Nonsense_Mutation p.S508* 0.13 TCGA-75-6211-01 10 115971637 115971637 G A TDRD1 Nonsense_Mutation p.W558* 0.13 TCGA-75-6211-01 10 116608455 116608455 G T FAM160B1 Missense_Mutation p.G588C 0.12 deleterious(0.01) possibly_damaging(0.827) TCGA-75-6211-01 10 129906387 129906387 T C MKI67 Silent p.E1239E 0.25 TCGA-75-6211-01 10 16955844 16955844 G T CUBN Missense_Mutation p.A2500D 0.30 tolerated(0.12) benign(0.003) TCGA-75-6211-01 10 33135305 33135305 G T C10ORF68 Missense_Mutation p.E445D 0.13 tolerated(0.47) benign(0.001) TCGA-75-6211-01 10 33209284 33209284 G A ITGB1 Silent p.N386N 0.26 TCGA-75-6211-01 10 48414122 48414122 C G GDF2 Missense_Mutation p.R249T 0.15 deleterious(0.02) benign(0.003) TCGA-75-6211-01 10 48416440 48416440 G A GDF2 Missense_Mutation p.P85L 0.13 deleterious(0) probably_damaging(0.977) TCGA-75-6211-01 10 5781857 5781857 C A FAM208B Missense_Mutation p.S575Y 0.12 deleterious(0) probably_damaging(0.968) TCGA-75-6211-01 10 64968213 64968213 G C JMJD1C Silent p.R1072R 0.12 TCGA-75-6211-01 10 74899485 74899485 T A ECD Missense_Mutation p.M413L 0.31 tolerated(0.63) benign(0.002) TCGA-75-6211-01 10 75029452 75029452 C A TTC18 Nonsense_Mutation p.E1053* 0.13 TCGA-75-6211-01 10 85904649 85904649 C G GHITM Silent p.V120V 0.09 TCGA-75-6211-01 10 87407154 87407154 C A GRID1 Missense_Mutation p.R666S 0.15 tolerated(0.14) probably_damaging(0.974) TCGA-75-6211-01 10 87407155 87407155 C A GRID1 Splice_Site p.X666_splice 0.15 TCGA-75-6211-01 10 91497559 91497559 G T KIF20B Silent p.T947T 0.09 TCGA-75-6211-01 10 93788545 93788545 A T BTAF1 Splice_Site p.X1803_splice 0.09 TCGA-75-6211-01 10 98192670 98192670 G A TLL2 Silent p.A138A 0.22 TCGA-75-6211-01 10 98192671 98192671 G T TLL2 Missense_Mutation p.A138D 0.23 tolerated(0.35) benign(0.042) TCGA-75-6211-01 11 116692349 116692349 A T APOA4 Missense_Mutation p.L142Q 0.71 deleterious(0) probably_damaging(0.997) TCGA-75-6211-01 11 118425705 118425705 C G IFT46 Missense_Mutation p.K169N 0.25 deleterious(0) probably_damaging(0.999) TCGA-75-6211-01 11 119508809 119508809 T C RP11-196E1.3 Intron 0.33 TCGA-75-6211-01 11 123847594 123847594 G A OR10S1 Missense_Mutation p.P269S 0.11 tolerated(0.22) possibly_damaging(0.693) TCGA-75-6211-01 11 124756396 124756396 C T ROBO4 Missense_Mutation p.G920S 0.61 tolerated(0.08) possibly_damaging(0.862) TCGA-75-6211-01 11 132290114 132290114 G T OPCML Silent p.L337L 0.54 TCGA-75-6211-01 11 21555957 21555957 C G NELL1 Missense_Mutation p.H561Q 0.36 tolerated(0.3) possibly_damaging(0.84) TCGA-75-6211-01 11 284494 284494 C T NLRP6 Nonsense_Mutation p.Q798* 0.44 TCGA-75-6211-01 11 43364037 43364037 C T API5 Missense_Mutation p.R518C 0.15 deleterious_low_confidence(0) unknown(0) TCGA-75-6211-01 11 47726214 47726214 A T AGBL2 Missense_Mutation p.V156E 0.17 tolerated(0.29) benign(0.018) TCGA-75-6211-01 11 48511031 48511031 A T OR4A47 Missense_Mutation p.K229N 0.30 deleterious_low_confidence(0) benign(0.063) TCGA-75-6211-01 11 56128008 56128008 G T OR8J1 Nonsense_Mutation p.E96* 0.09 TCGA-75-6211-01 11 57886684 57886684 G T OR9I1 Missense_Mutation p.T78N 0.57 deleterious(0.01) possibly_damaging(0.517) TCGA-75-6211-01 11 59814632 59814632 G T OOSP2 3'UTR 0.53 TCGA-75-6211-01 11 60184263 60184263 G C MS4A14 Missense_Mutation p.D641H 0.15 deleterious(0.01) possibly_damaging(0.867) TCGA-75-6211-01 11 6048493 6048493 C T OR56A1 Missense_Mutation p.V148M 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-75-6211-01 11 6236055 6236055 C A FAM160A2 Missense_Mutation p.A782S 0.20 deleterious(0.04) benign(0.043) TCGA-75-6211-01 11 6291420 6291420 C - CCKBR Frame_Shift_Del p.H170Tfs*5 0.38 TCGA-75-6211-01 11 67269493 67269493 C A PITPNM1 Silent p.R160R 0.23 TCGA-75-6211-01 11 75438534 75438534 C A MOGAT2 Missense_Mutation p.P109T 0.65 deleterious(0) probably_damaging(0.999) TCGA-75-6211-01 11 75438535 75438535 C A MOGAT2 Missense_Mutation p.P109H 0.66 deleterious(0) probably_damaging(1) TCGA-75-6211-01 11 82625779 82625779 A T C11orf82 5'UTR 0.61 TCGA-75-6211-01 11 8496463 8496463 C G STK33 5'UTR 0.49 TCGA-75-6211-01 11 92495099 92495099 C A FAT3 Missense_Mutation p.D1249E 0.07 probably_damaging(0.999) TCGA-75-6211-01 11 93837765 93837765 A G HEPHL1 Silent p.R918R 0.10 TCGA-75-6211-01 11 93839281 93839281 G T HEPHL1 Missense_Mutation p.E1010D 0.50 tolerated(0.07) probably_damaging(0.957) TCGA-75-6211-01 12 100796515 100796515 A G SLC17A8 Missense_Mutation p.I349V 0.45 tolerated(0.16) probably_damaging(0.992) TCGA-75-6211-01 12 10150960 10150960 G A CLEC1B Silent p.S28S 0.38 TCGA-75-6211-01 12 104492250 104492250 A T HCFC2 Missense_Mutation p.I624F 0.35 tolerated(0.71) benign(0.014) TCGA-75-6211-01 12 111785687 111785687 G T CUX2 Missense_Mutation p.G1340V 0.35 tolerated_low_confidence(0.2) benign(0.024) TCGA-75-6211-01 12 112186168 112186168 G T ACAD10 Missense_Mutation p.D876Y 0.13 deleterious(0) probably_damaging(0.957) TCGA-75-6211-01 12 113416336 113416336 C A OAS2 5'UTR 0.27 TCGA-75-6211-01 12 113436106 113436106 A T OAS2 Missense_Mutation p.N300I 0.44 deleterious(0.03) probably_damaging(0.976) TCGA-75-6211-01 12 113552717 113552717 G A RASAL1 Missense_Mutation p.L357F 0.07 deleterious(0.03) possibly_damaging(0.894) TCGA-75-6211-01 12 117426644 117426644 G T FBXW8 Missense_Mutation p.Q403H 0.17 deleterious(0) benign(0.393) TCGA-75-6211-01 12 125509731 125509731 G A BRI3BP Missense_Mutation p.V171M 0.14 tolerated(0.18) benign(0.101) TCGA-75-6211-01 12 13215867 13215867 C T KIAA1467 Silent p.D270D 0.14 TCGA-75-6211-01 12 133420622 133420622 C G CHFR Missense_Mutation p.E624Q 0.24 tolerated(0.05) probably_damaging(0.964) TCGA-75-6211-01 12 18234173 18234173 C A RERGL Missense_Mutation p.M190I 0.19 tolerated(0.88) benign(0.016) TCGA-75-6211-01 12 21011412 21011412 C G LST3 Missense_Mutation p.S89C 0.08 deleterious(0) probably_damaging(0.995) TCGA-75-6211-01 12 3040343 3040343 G T TULP3 Missense_Mutation p.R211S 0.17 deleterious(0) benign(0.007) TCGA-75-6211-01 12 39751210 39751210 C T KIF21A Silent p.V415V 0.37 TCGA-75-6211-01 12 45567458 45567458 C A PLEKHA8P1 RNA 0.36 TCGA-75-6211-01 12 49170959 49170959 C A ADCY6 Missense_Mutation p.G435V 0.22 deleterious(0) probably_damaging(1) TCGA-75-6211-01 12 49170960 49170960 C A ADCY6 Missense_Mutation p.G435W 0.22 deleterious(0) probably_damaging(1) TCGA-75-6211-01 12 52685241 52685241 G T KRT81 Nonsense_Mutation p.C3* 0.43 TCGA-75-6211-01 12 5672645 5672645 G T ANO2 Missense_Mutation p.S939R 0.26 tolerated(0.26) possibly_damaging(0.558) TCGA-75-6211-01 12 56865309 56865309 C T GLS2 Missense_Mutation p.E591K 0.39 tolerated_low_confidence(0.19) benign(0.004) TCGA-75-6211-01 12 6182795 6182795 G T VWF Nonsense_Mutation p.C329* 0.14 TCGA-75-6211-01 12 67691560 67691560 G T CAND1 Missense_Mutation p.V261L 0.11 tolerated(0.56) benign(0.019) TCGA-75-6211-01 12 69084442 69084442 G T NUP107 Missense_Mutation p.Q73H 0.28 tolerated_low_confidence(0.57) benign(0) TCGA-75-6211-01 12 76788492 76788492 C T OSBPL8 Silent p.A230A 0.26 TCGA-75-6211-01 12 9243991 9243991 G T A2M Missense_Mutation p.P759T 0.05 deleterious(0) probably_damaging(1) TCGA-75-6211-01 12 9317929 9317929 G T PZP Missense_Mutation p.P765T 0.21 deleterious(0) probably_damaging(0.999) TCGA-75-6211-01 12 97328824 97328824 T C NEDD1 Missense_Mutation p.V194A 0.06 deleterious(0) probably_damaging(0.999) TCGA-75-6211-01 13 101320951 101320951 G C TMTC4 Missense_Mutation p.S34C 0.19 tolerated(0.1) benign(0.007) TCGA-75-6211-01 13 32937423 32937423 C A BRCA2 Nonsense_Mutation p.S2695* 0.15 TCGA-75-6211-01 13 33017222 33017223 - T N4BP2L2 Frame_Shift_Ins p.N484Kfs*2 0.14 TCGA-75-6211-01 13 38320279 38320279 C A TRPC4 Missense_Mutation p.S231I 0.18 deleterious(0) probably_damaging(1) TCGA-75-6211-01 13 53036058 53036058 G C CKAP2 Missense_Mutation p.R367T 0.23 deleterious(0) probably_damaging(0.913) TCGA-75-6211-01 13 53418802 53418802 G T PCDH8 Missense_Mutation p.P1036T 0.12 tolerated(0.09) benign(0.288) TCGA-75-6211-01 13 79190706 79190707 - A RNF219 Frame_Shift_Ins p.C397Lfs*10 0.12 TCGA-75-6211-01 14 100803403 100803403 C A WARS Missense_Mutation p.R417M 0.12 deleterious(0.01) possibly_damaging(0.896) TCGA-75-6211-01 14 105410286 105410286 C A AHNAK2 Missense_Mutation p.E3834D 0.24 possibly_damaging(0.824) TCGA-75-6211-01 14 106967293 106967293 G A IGHV1-46 Missense_Mutation p.S36L 0.10 deleterious(0.03) possibly_damaging(0.529) TCGA-75-6211-01 14 107211243 107211243 C A IGHV3-73 Splice_Site p.X16_splice 0.19 TCGA-75-6211-01 14 22265804 22265804 C G TRAV8-1 Missense_Mutation p.H29Q 0.13 tolerated(0.53) benign(0.065) TCGA-75-6211-01 14 25044512 25044512 C A CTSG Silent p.V54V 0.11 TCGA-75-6211-01 14 28734323 28734323 A G BNIP3P1 RNA 0.08 TCGA-75-6211-01 14 34396240 34396240 C A EGLN3 Splice_Site p.X205_splice 0.10 TCGA-75-6211-01 14 65271709 65271709 C A SPTB Missense_Mutation p.R83L 0.22 deleterious(0) probably_damaging(0.996) TCGA-75-6211-01 14 77275724 77275724 C A ANGEL1 Missense_Mutation p.W109C 0.24 tolerated(0.32) probably_damaging(0.944) TCGA-75-6211-01 14 77942014 77942014 T A ISM2 Missense_Mutation p.N547I 0.26 deleterious(0) probably_damaging(0.973) TCGA-75-6211-01 14 80997210 80997210 G T CEP128 Missense_Mutation p.D967E 0.10 tolerated(0.16) benign(0.029) TCGA-75-6211-01 14 93408241 93408241 C A ITPK1 Missense_Mutation p.G304C 0.53 deleterious(0) probably_damaging(0.972) TCGA-75-6211-01 15 23006181 23006181 C A NIPA2 3'UTR 0.11 TCGA-75-6211-01 15 25296703 25296703 A T SNORD116-1 RNA 0.17 TCGA-75-6211-01 15 26812850 26812850 C A GABRB3 Missense_Mutation p.R238L 0.10 tolerated(0.06) benign(0.235) TCGA-75-6211-01 15 28196981 28196981 T A OCA2 Missense_Mutation p.I634F 0.21 deleterious(0) probably_damaging(0.99) TCGA-75-6211-01 15 28422209 28422209 C A HERC2 Missense_Mutation p.G3107W 0.16 probably_damaging(1) TCGA-75-6211-01 15 33603291 33603291 G T RYR3 Silent p.L15L 0.35 TCGA-75-6211-01 15 49426281 49426281 C G COPS2 Missense_Mutation p.R254T 0.20 tolerated(0.37) benign(0.147) TCGA-75-6211-01 15 51507397 51507397 G T CYP19A1 Missense_Mutation p.N297K 0.10 tolerated(0.18) probably_damaging(0.987) TCGA-75-6211-01 15 51755682 51755682 G A DMXL2 Missense_Mutation p.S2607F 0.14 tolerated(0.21) benign(0.034) TCGA-75-6211-01 15 66727441 66727441 T C MAP2K1 Missense_Mutation p.F53L 0.30 deleterious(0.03) possibly_damaging(0.852) TCGA-75-6211-01 15 66850109 66850109 G T LCTL Silent p.A291A 0.33 TCGA-75-6211-01 15 75815560 75815560 G A PTPN9 Silent p.S108S 0.23 TCGA-75-6211-01 15 75981627 75981627 C G CSPG4 Missense_Mutation p.Q593H 0.22 deleterious(0.01) probably_damaging(0.96) TCGA-75-6211-01 15 77087629 77087629 C T SCAPER Missense_Mutation p.R255H 0.13 tolerated(0.13) benign(0.005) TCGA-75-6211-01 15 88483959 88483959 G A NTRK3 Silent p.D537D 0.11 TCGA-75-6211-01 15 89392759 89392759 C A ACAN Missense_Mutation p.T608K 0.27 deleterious(0) unknown(0) TCGA-75-6211-01 16 30510692 30510692 A T ITGAL Missense_Mutation p.Q676L 0.22 tolerated(0.06) benign(0.115) TCGA-75-6211-01 16 30581633 30581633 G A ZNF688 Silent p.S145S 0.15 TCGA-75-6211-01 16 31439056 31439056 A T COX6A2 3'UTR 0.36 TCGA-75-6211-01 16 31504879 31504879 T C C16orf58 Intron 0.11 TCGA-75-6211-01 16 3614682 3614682 T G NLRC3 Silent p.R133R 0.38 TCGA-75-6211-01 16 49660112 49660112 C G ZNF423 Missense_Mutation p.E1182D 0.20 tolerated(0.56) benign(0.05) TCGA-75-6211-01 16 49670744 49670744 G T ZNF423 Missense_Mutation p.H773Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-75-6211-01 16 50642220 50642220 G T NKD1 Missense_Mutation p.V70L 0.18 tolerated(0.3) benign(0.05) TCGA-75-6211-01 16 53341597 53341597 G T CHD9 Missense_Mutation p.R2262L 0.31 unknown(0) TCGA-75-6211-01 16 68224795 68224795 G T NFATC3 Silent p.L741L 0.23 TCGA-75-6211-01 16 70605714 70605714 T C SF3B3 Nonstop_Mutation p.*1218Rext*35 0.18 TCGA-75-6211-01 16 70605715 70605715 G T SF3B3 Nonstop_Mutation p.*1218Lext*35 0.18 TCGA-75-6211-01 16 71509360 71509360 T C ZNF19 Missense_Mutation p.K364E 0.14 deleterious(0.01) benign(0.394) TCGA-75-6211-01 16 72164249 72164249 C A PMFBP1 Missense_Mutation p.V549L 0.17 tolerated(0.28) benign(0.006) TCGA-75-6211-01 16 77356285 77356285 C A ADAMTS18 Missense_Mutation p.G704V 0.09 deleterious(0) probably_damaging(0.993) TCGA-75-6211-01 16 81232459 81232459 A T PKD1L2 Missense_Mutation p.S451T 0.29 deleterious(0.02) possibly_damaging(0.886) TCGA-75-6211-01 16 816697 816697 G T MSLN Missense_Mutation p.K428N 0.32 tolerated(0.49) benign(0.18) TCGA-75-6211-01 16 84050277 84050277 C A SLC38A8 Missense_Mutation p.A337S 0.23 tolerated(0.37) possibly_damaging(0.564) TCGA-75-6211-01 16 84050766 84050766 G C SLC38A8 Missense_Mutation p.P311R 0.14 deleterious(0) probably_damaging(0.996) TCGA-75-6211-01 16 86582141 86582141 C A MTHFSD Nonsense_Mutation p.G94* 0.22 TCGA-75-6211-01 16 87636700 87636700 G A JPH3 5'UTR 0.19 TCGA-75-6211-01 16 88951655 88951655 G T CBFA2T3 Missense_Mutation p.R306S 0.33 deleterious(0.04) benign(0.01) TCGA-75-6211-01 17 10366242 10366242 G T MYH4 Silent p.V316V 0.49 TCGA-75-6211-01 17 10417165 10417165 G T MYH1 Silent p.T238T 0.48 TCGA-75-6211-01 17 10446451 10446451 T A MYH2 Missense_Mutation p.T257S 0.17 tolerated(0.18) benign(0.011) TCGA-75-6211-01 17 10447283 10447283 T C MYH2 Missense_Mutation p.Y195C 0.13 deleterious(0) probably_damaging(0.996) TCGA-75-6211-01 17 10535312 10535312 C G MYH3 Missense_Mutation p.D1660H 0.50 deleterious(0.01) possibly_damaging(0.842) TCGA-75-6211-01 17 29663445 29663445 C T NF1 Missense_Mutation p.T2034I 0.20 deleterious(0) probably_damaging(0.986) TCGA-75-6211-01 17 39150336 39150336 G A KRTAP3-3 Missense_Mutation p.A5V 0.25 tolerated_low_confidence(0.55) benign(0.033) TCGA-75-6211-01 17 41297023 41297023 C T NBR2 3'Flank 0.22 TCGA-75-6211-01 17 45886818 45886818 T A OSBPL7 Missense_Mutation p.K636M 0.27 deleterious(0) probably_damaging(1) TCGA-75-6211-01 17 56277625 56277625 C A EPX Missense_Mutation p.P526H 0.18 tolerated(0.19) probably_damaging(0.996) TCGA-75-6211-01 17 58946045 58946045 G T BCAS3 Splice_Site p.X195_splice 0.21 TCGA-75-6211-01 17 59668525 59668525 G T NACA2 Missense_Mutation p.T6K 0.30 tolerated(0.08) benign(0.003) TCGA-75-6211-01 17 6330265 6330265 C A AIPL1 Missense_Mutation p.R193L 0.50 tolerated(0.13) possibly_damaging(0.657) TCGA-75-6211-01 17 68172048 68172048 G A KCNJ2 Missense_Mutation p.A290T 0.10 deleterious(0.02) benign(0.424) TCGA-75-6211-01 17 74289961 74289961 G A QRICH2 Missense_Mutation p.R117W 0.13 deleterious(0) benign(0.409) TCGA-75-6211-01 17 7579481 7579482 - C TP53 Frame_Shift_Ins p.A69Gfs*80 0.41 TCGA-75-6211-01 17 80274796 80274796 G A CD7 Silent p.C48C 0.20 TCGA-75-6211-01 17 8706497 8706497 G T PIK3R6 3'UTR 0.62 TCGA-75-6211-01 17 9578299 9578299 A T USP43 Missense_Mutation p.R278W 0.46 deleterious(0) probably_damaging(0.93) TCGA-75-6211-01 18 13049430 13049430 G T CEP192 Missense_Mutation p.K880N 0.18 deleterious(0.03) possibly_damaging(0.691) TCGA-75-6211-01 18 14184153 14184153 G A ANKRD20A5P Intron 0.19 TCGA-75-6211-01 18 22804890 22804890 G A ZNF521 Nonsense_Mutation p.Q998* 0.25 TCGA-75-6211-01 18 22806795 22806795 G C ZNF521 Missense_Mutation p.L363V 0.15 tolerated_low_confidence(0.49) possibly_damaging(0.558) TCGA-75-6211-01 18 25543368 25543368 G T CDH2 Silent p.R823R 0.26 TCGA-75-6211-01 18 25616525 25616525 C - CDH2 Intron 0.20 TCGA-75-6211-01 18 28979267 28979267 G T DSG4 Missense_Mutation p.Q346H 0.21 tolerated(0.44) benign(0.002) TCGA-75-6211-01 18 30803130 30803130 T A CCDC178 Missense_Mutation p.K624N 0.16 tolerated(0.08) possibly_damaging(0.549) TCGA-75-6211-01 18 348117 348117 G C COLEC12 Silent p.R76R 0.27 TCGA-75-6211-01 18 64172379 64172379 G A CDH19 Silent p.T663T 0.28 TCGA-75-6211-01 19 10610099 10610099 C G KEAP1 Missense_Mutation p.R204P 0.62 deleterious(0.02) probably_damaging(0.998) TCGA-75-6211-01 19 12384274 12384274 T A ZNF44 Missense_Mutation p.S314C 0.32 tolerated(0.08) probably_damaging(0.998) TCGA-75-6211-01 19 15198003 15198003 G T OR1I1 Missense_Mutation p.A43S 0.10 deleterious(0.03) benign(0.094) TCGA-75-6211-01 19 17988585 17988585 G T SLC5A5 Missense_Mutation p.G251V 0.35 deleterious(0) probably_damaging(0.996) TCGA-75-6211-01 19 22362965 22362965 C T ZNF676 Silent p.S518S 0.25 TCGA-75-6211-01 19 22575568 22575568 C A ZNF98 Missense_Mutation p.D157Y 0.28 tolerated(0.11) probably_damaging(0.997) TCGA-75-6211-01 19 23545221 23545221 C G ZNF91 Missense_Mutation p.C187S 0.21 deleterious(0.03) benign(0.03) TCGA-75-6211-01 19 31040344 31040344 C T ZNF536 Missense_Mutation p.S1273F 0.10 deleterious_low_confidence(0) benign(0.309) TCGA-75-6211-01 19 33350773 33350773 G A SLC7A9 Missense_Mutation p.L283F 0.08 tolerated(0.06) probably_damaging(0.968) TCGA-75-6211-01 19 35791291 35791291 G T MAG Silent p.V318V 0.30 TCGA-75-6211-01 19 362114 362114 G T THEG 3'UTR 0.50 TCGA-75-6211-01 19 36380868 36380868 C A NFKBID Missense_Mutation p.G271V 0.24 deleterious(0) probably_damaging(1) TCGA-75-6211-01 19 38126043 38126043 C A ZFP30 Missense_Mutation p.D467Y 0.17 deleterious(0) probably_damaging(1) TCGA-75-6211-01 19 38858712 38858712 G T CATSPERG Silent p.T985T 0.34 TCGA-75-6211-01 19 41235228 41235228 G T ITPKC Missense_Mutation p.M459I 0.31 tolerated(0.21) benign(0) TCGA-75-6211-01 19 42563598 42563598 C T GRIK5 Missense_Mutation p.R197Q 0.31 tolerated(0.53) benign(0.065) TCGA-75-6211-01 19 42728897 42728897 C G ZNF526 Missense_Mutation p.S114R 0.14 deleterious(0.01) benign(0.117) TCGA-75-6211-01 19 44251914 44251914 C A SMG9 Missense_Mutation p.G121C 0.24 deleterious(0.01) possibly_damaging(0.533) TCGA-75-6211-01 19 46825041 46825041 G T HIF3A Missense_Mutation p.G385C 0.25 deleterious(0.01) possibly_damaging(0.841) TCGA-75-6211-01 19 47127082 47127082 C A PTGIR Missense_Mutation p.R134L 0.64 deleterious(0) possibly_damaging(0.898) TCGA-75-6211-01 19 48608688 48608688 T A PLA2G4C Intron 0.16 TCGA-75-6211-01 19 49540076 49540076 G A CTB-60B18.6 5'UTR 0.36 TCGA-75-6211-01 19 49657099 49657099 G A HRC Missense_Mutation p.P466S 0.24 tolerated(0.12) benign(0.147) TCGA-75-6211-01 19 49797775 49797775 C A SLC6A16 Missense_Mutation p.G422V 0.36 deleterious(0.01) probably_damaging(0.99) TCGA-75-6211-01 19 53007907 53007907 G T ZNF578 Splice_Site p.X22_splice 0.21 TCGA-75-6211-01 19 54646691 54646691 G T CNOT3 5'UTR 0.14 TCGA-75-6211-01 19 54745584 54745584 C A LILRA6 Missense_Mutation p.G176W 0.25 tolerated(0.21) benign(0.007) TCGA-75-6211-01 19 55401176 55401176 C A FCAR Missense_Mutation p.Q271K 0.26 tolerated(0.06) benign(0.162) TCGA-75-6211-01 19 56104097 56104097 G A FIZ1 Missense_Mutation p.P404S 0.38 tolerated(0.47) benign(0.06) TCGA-75-6211-01 19 56172460 56172460 G T U2AF2 Missense_Mutation p.A131S 0.28 tolerated(0.19) benign(0.009) TCGA-75-6211-01 19 56701551 56701551 G T ZSCAN5B Missense_Mutation p.T378K 0.24 deleterious(0) probably_damaging(0.995) TCGA-75-6211-01 19 56701905 56701905 C A ZSCAN5B Missense_Mutation p.R260I 0.10 tolerated(0.18) benign(0.002) TCGA-75-6211-01 19 57642636 57642636 T A USP29 Missense_Mutation p.S865T 0.25 tolerated(0.05) benign(0.265) TCGA-75-6211-01 19 58565342 58565342 G T ZSCAN1 Missense_Mutation p.V384F 0.31 tolerated(0.12) probably_damaging(0.999) TCGA-75-6211-01 19 9024488 9024488 G T MUC16 Missense_Mutation p.H12349N 0.39 possibly_damaging(0.465) TCGA-75-6211-01 19 9059194 9059194 C A MUC16 Missense_Mutation p.D9418Y 0.39 unknown(0) TCGA-75-6211-01 1 115124154 115124154 T C BCAS2 Missense_Mutation p.D20G 0.31 deleterious(0) probably_damaging(0.994) TCGA-75-6211-01 1 115168229 115168229 C A DENND2C Missense_Mutation p.S126I 0.11 deleterious(0.03) benign(0.089) TCGA-75-6211-01 1 152282768 152282768 G T FLG Missense_Mutation p.H1532N 0.25 benign(0.107) TCGA-75-6211-01 1 152282769 152282769 G T FLG Silent p.S1531S 0.25 TCGA-75-6211-01 1 152648564 152648564 C A LCE2C Missense_Mutation p.P25T 0.37 tolerated_low_confidence(0.32) unknown(0) TCGA-75-6211-01 1 156955931 156955931 G A ARHGEF11 Missense_Mutation p.P23S 0.36 tolerated_low_confidence(0.1) benign(0.09) TCGA-75-6211-01 1 157805822 157805822 A G CD5L Missense_Mutation p.V60A 0.12 deleterious(0) probably_damaging(0.958) TCGA-75-6211-01 1 158325783 158325783 C A CD1E Missense_Mutation p.D264E 0.36 deleterious(0) probably_damaging(0.916) TCGA-75-6211-01 1 158450371 158450371 G T OR10R2 Missense_Mutation p.C235F 0.43 tolerated(1) benign(0.029) TCGA-75-6211-01 1 159683541 159683541 C A CRP Missense_Mutation p.S150I 0.21 tolerated(0.15) possibly_damaging(0.7) TCGA-75-6211-01 1 175365799 175365799 G A TNR Missense_Mutation p.P374L 0.28 deleterious(0.01) probably_damaging(1) TCGA-75-6211-01 1 176564173 176564173 T A PAPPA2 Missense_Mutation p.L478H 0.34 tolerated(0.36) possibly_damaging(0.625) TCGA-75-6211-01 1 181725204 181725204 G A CACNA1E Missense_Mutation p.V1368I 0.24 deleterious(0.02) possibly_damaging(0.699) TCGA-75-6211-01 1 185191096 185191096 T C SWT1 Missense_Mutation p.L746P 0.11 tolerated(0.06) benign(0.025) TCGA-75-6211-01 1 186158963 186158963 C A HMCN1 Missense_Mutation p.Q5621K 0.10 possibly_damaging(0.761) TCGA-75-6211-01 1 192545461 192545461 G T RGS1 Nonsense_Mutation p.E62* 0.31 TCGA-75-6211-01 1 192547461 192547461 C A RGS1 Silent p.P130P 0.32 TCGA-75-6211-01 1 19566877 19566877 C T EMC1 Missense_Mutation p.V234I 0.42 tolerated(0.24) benign(0.093) TCGA-75-6211-01 1 197621405 197621405 T A DENND1B Missense_Mutation p.H136L 0.17 tolerated(0.74) benign(0.019) TCGA-75-6211-01 1 202245537 202245537 C A LGR6 Missense_Mutation p.P178T 0.36 deleterious(0) probably_damaging(1) TCGA-75-6211-01 1 216369927 216369927 G T USH2A Missense_Mutation p.P1407T 0.25 benign(0.01) TCGA-75-6211-01 1 228412410 228412410 G T OBSCN Silent p.R1060R 0.26 TCGA-75-6211-01 1 236746130 236746130 C A HEATR1 Missense_Mutation p.R823M 0.32 deleterious(0.05) possibly_damaging(0.707) TCGA-75-6211-01 1 240656615 240656615 G T GREM2 Missense_Mutation p.A54D 0.17 tolerated(0.52) benign(0.008) TCGA-75-6211-01 1 244218618 244218618 G A ZBTB18 Silent p.L514L 0.19 TCGA-75-6211-01 1 247319988 247319988 A G ZNF124 Silent p.H250H 0.33 TCGA-75-6211-01 1 247614347 247614347 C A OR2B11 Missense_Mutation p.W313L 0.24 tolerated(0.14) benign(0.001) TCGA-75-6211-01 1 247921653 247921653 C A OR1C1 Missense_Mutation p.S19I 0.26 tolerated(0.28) benign(0.001) TCGA-75-6211-01 1 248616419 248616419 C A OR2T2 Silent p.T107T 0.15 TCGA-75-6211-01 1 32741606 32741606 C G LCK Missense_Mutation p.F191L 0.56 deleterious(0) benign(0.353) TCGA-75-6211-01 1 36501854 36501854 C A AGO3 Missense_Mutation p.P610T 0.20 deleterious(0) probably_damaging(0.989) TCGA-75-6211-01 1 37271752 37271752 A G GRIK3 Missense_Mutation p.I756T 0.35 deleterious(0) probably_damaging(0.946) TCGA-75-6211-01 1 38006344 38006344 G A SNIP1 Missense_Mutation p.H114Y 0.11 deleterious(0) benign(0.164) TCGA-75-6211-01 1 47398461 47398461 C T CYP4A11 Missense_Mutation p.A446T 0.17 deleterious(0) possibly_damaging(0.78) TCGA-75-6211-01 1 6194814 6194814 G T CHD5 Nonsense_Mutation p.C992* 0.13 TCGA-75-6211-01 1 65157011 65157011 A T CACHD1 Missense_Mutation p.S1147C 0.26 deleterious(0) probably_damaging(0.997) TCGA-75-6211-01 1 79383572 79383572 G T ELTD1 Missense_Mutation p.A542D 0.14 deleterious(0) probably_damaging(1) TCGA-75-6211-01 1 82416126 82416126 G A LPHN2 Silent p.R484R 0.12 TCGA-75-6211-01 1 85724262 85724262 T C C1orf52 Silent p.P140P 0.35 TCGA-75-6211-01 1 86954799 86954799 G A CLCA1 Missense_Mutation p.V435I 0.19 tolerated(1) possibly_damaging(0.507) TCGA-75-6211-01 20 1456686 1456686 T A SIRPB2 3'UTR 0.45 TCGA-75-6211-01 20 31291087 31291087 C A COMMD7 3'UTR 0.21 TCGA-75-6211-01 20 368840 368840 G A TRIB3 Silent p.V62V 0.24 TCGA-75-6211-01 20 37005411 37005411 C T LBP 3'UTR 0.32 TCGA-75-6211-01 20 57768085 57768085 G C ZNF831 Missense_Mutation p.V671L 0.35 deleterious(0.02) benign(0.038) TCGA-75-6211-01 20 57829482 57829482 G T ZNF831 Missense_Mutation p.G1573V 0.16 deleterious(0.05) possibly_damaging(0.695) TCGA-75-6211-01 20 60584201 60584201 T C TAF4 Silent p.K597K 0.36 TCGA-75-6211-01 20 62340383 62340383 A G ZGPAT Missense_Mutation p.M151V 0.27 tolerated(0.06) probably_damaging(0.995) TCGA-75-6211-01 20 7921091 7921091 C T HAO1 5'UTR 0.12 TCGA-75-6211-01 20 7963092 7963092 C A TMX4 Missense_Mutation p.A286S 0.18 tolerated(0.37) benign(0.033) TCGA-75-6211-01 21 10944750 10944750 C A TPTE Missense_Mutation p.D162Y 0.08 deleterious(0) probably_damaging(0.995) TCGA-75-6211-01 21 19165870 19165870 C T C21orf91 Silent p.V252V 0.11 TCGA-75-6211-01 21 22849786 22849786 A G NCAM2 Missense_Mutation p.I691V 0.19 tolerated(0.21) benign(0.014) TCGA-75-6211-01 21 31744439 31744439 G T KRTAP13-2 Silent p.P31P 0.31 TCGA-75-6211-01 22 23114827 23114827 A T IGLV3-12 Silent p.T33T 0.17 TCGA-75-6211-01 22 26194047 26194047 C A MYO18B Missense_Mutation p.A835E 0.27 deleterious(0) probably_damaging(0.959) TCGA-75-6211-01 22 31522949 31522949 G A INPP5J Missense_Mutation p.A145T 0.36 deleterious(0) possibly_damaging(0.581) TCGA-75-6211-01 22 42174740 42174740 C G MEI1 Missense_Mutation p.S913R 0.25 tolerated(0.13) possibly_damaging(0.494) TCGA-75-6211-01 22 46615710 46615710 G A PPARA Silent p.A170A 0.14 TCGA-75-6211-01 22 50572451 50572451 G T MOV10L1 Silent p.R642R 0.13 TCGA-75-6211-01 2 112755053 112755053 G T MERTK Missense_Mutation p.G535V 0.36 deleterious(0) possibly_damaging(0.847) TCGA-75-6211-01 2 113316941 113316941 C T POLR1B Missense_Mutation p.H468Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-75-6211-01 2 119604045 119604045 C T EN1 Silent p.G233G 0.27 TCGA-75-6211-01 2 125204514 125204514 G T CNTNAP5 Missense_Mutation p.E306D 0.36 deleterious(0) probably_damaging(0.973) TCGA-75-6211-01 2 131356256 131356256 C A CFC1 Missense_Mutation p.G69V 0.21 tolerated(0.1) benign(0.02) TCGA-75-6211-01 2 131486929 131486929 C A GPR148 Missense_Mutation p.L69M 0.27 tolerated(0.07) benign(0.355) TCGA-75-6211-01 2 150327362 150327362 T C LYPD6 Nonstop_Mutation p.*172Qext*8 0.26 TCGA-75-6211-01 2 155711698 155711698 C A KCNJ3 Missense_Mutation p.S460Y 0.28 tolerated_low_confidence(0.06) benign(0.107) TCGA-75-6211-01 2 159195539 159195539 T C CCDC148 Missense_Mutation p.Q182R 0.30 tolerated(0.15) benign(0.005) TCGA-75-6211-01 2 1653010 1653010 T A PXDN Missense_Mutation p.S848C 0.38 deleterious(0) probably_damaging(0.964) TCGA-75-6211-01 2 165970389 165970389 A G SCN3A Silent p.I1202I 0.30 TCGA-75-6211-01 2 166898802 166898802 C A SCN1A Nonsense_Mutation p.E726* 0.27 TCGA-75-6211-01 2 170145561 170145561 G T LRP2 Missense_Mutation p.N339K 0.24 benign(0.211) TCGA-75-6211-01 2 175436881 175436881 T A WIPF1 Missense_Mutation p.T218S 0.32 tolerated(0.34) benign(0.049) TCGA-75-6211-01 2 176948097 176948097 A T EVX2 Silent p.L136L 0.53 TCGA-75-6211-01 2 179458826 179458826 G T TTN Missense_Mutation p.R19432S 0.25 TCGA-75-6211-01 2 179466637 179466637 C T TTN Missense_Mutation p.G18425E 0.14 TCGA-75-6211-01 2 179614227 179614227 T C TTN Intron 0.25 TCGA-75-6211-01 2 186673585 186673585 C A FSIP2 Missense_Mutation p.P6607T 0.10 benign(0.209) TCGA-75-6211-01 2 189868727 189868727 G C COL3A1 Missense_Mutation p.G894A 0.30 unknown(0) TCGA-75-6211-01 2 189876399 189876399 C A COL3A1 Missense_Mutation p.R1434S 0.27 unknown(0) TCGA-75-6211-01 2 202899689 202899689 G T FZD7 Missense_Mutation p.A107S 0.24 deleterious(0) possibly_damaging(0.854) TCGA-75-6211-01 2 204259513 204259513 C G ABI2 Silent p.P217P 0.26 TCGA-75-6211-01 2 209165672 209165672 G C PIKFYVE Missense_Mutation p.Q354H 0.11 tolerated(0.05) possibly_damaging(0.896) TCGA-75-6211-01 2 219267989 219267989 G - CTDSP1 Frame_Shift_Del p.A171Pfs*19 0.11 TCGA-75-6211-01 2 233274340 233274340 G A ALPPL2 Missense_Mutation p.G453S 0.18 deleterious(0.03) possibly_damaging(0.766) TCGA-75-6211-01 2 233391241 233391241 A T CHRND Missense_Mutation p.S19C 0.14 tolerated(0.3) benign(0.002) TCGA-75-6211-01 2 26652528 26652528 G T DRC1 Missense_Mutation p.K191N 0.41 deleterious(0) probably_damaging(0.997) TCGA-75-6211-01 2 3200660 3200660 C A TSSC1 Silent p.R215R 0.71 TCGA-75-6211-01 2 48034055 48034055 A T MSH6 3'UTR 0.35 TCGA-75-6211-01 2 48873798 48873798 A G STON1-GTF2A1L Missense_Mutation p.I903V 0.34 tolerated(1) benign(0.004) TCGA-75-6211-01 2 69093656 69093657 GG - BMP10 Frame_Shift_Del p.L128Pfs*10 0.22 TCGA-75-6211-01 2 96260875 96260875 A G TRIM43 Silent p.R163R 0.17 TCGA-75-6211-01 2 98195478 98195478 C T ANKRD36B RNA 0.12 TCGA-75-6211-01 2 98887214 98887214 G T VWA3B Missense_Mutation p.L971F 0.31 deleterious(0.01) possibly_damaging(0.786) TCGA-75-6211-01 2 99012551 99012551 G C CNGA3 Missense_Mutation p.L306F 0.13 deleterious(0) probably_damaging(0.999) TCGA-75-6211-01 2 99185059 99185059 G T INPP4A Missense_Mutation p.V821F 0.26 tolerated(0.71) benign(0.252) TCGA-75-6211-01 3 141163939 141163939 C T ZBTB38 Silent p.F903F 0.15 TCGA-75-6211-01 3 14552931 14552931 C A GRIP2 RNA 0.28 TCGA-75-6211-01 3 167246862 167246862 C A WDR49 Missense_Mutation p.W443L 0.28 tolerated(0.33) benign(0.033) TCGA-75-6211-01 3 169646344 169646344 C T SAMD7 Missense_Mutation p.P340L 0.34 deleterious(0) probably_damaging(1) TCGA-75-6211-01 3 183994288 183994288 C G ECE2 Intron 0.43 TCGA-75-6211-01 3 184800747 184800747 T A C3orf70 3'UTR 0.40 TCGA-75-6211-01 3 28555552 28555552 T A ZCWPW2 Intron 0.33 TCGA-75-6211-01 3 39174562 39174562 G T TTC21A Missense_Mutation p.R868L 0.20 deleterious(0) possibly_damaging(0.641) TCGA-75-6211-01 3 46542440 46542440 A G RTP3 3'Flank 0.26 TCGA-75-6211-01 4 103644031 103644033 CCG AA MANBA Frame_Shift_Del p.R182Lfs*34 0.32 TCGA-75-6211-01 4 129867262 129867262 C A SCLT1 Nonsense_Mutation p.E447* 0.37 TCGA-75-6211-01 4 155720237 155720237 C T RBM46 Missense_Mutation p.P308L 0.30 deleterious(0) probably_damaging(0.999) TCGA-75-6211-01 4 170384541 170384541 T A NEK1 Missense_Mutation p.T814S 0.50 deleterious(0) probably_damaging(0.964) TCGA-75-6211-01 4 56212671 56212671 G A SRD5A3 Silent p.K56K 0.27 TCGA-75-6211-01 4 77288728 77288728 C A CCDC158 Missense_Mutation p.A517S 0.14 tolerated(0.59) benign(0.003) TCGA-75-6211-01 4 88959554 88959554 C G PKD2 Missense_Mutation p.S332C 0.40 deleterious(0.04) probably_damaging(0.975) TCGA-75-6211-01 5 112927872 112927872 G T YTHDC2 Silent p.G1403G 0.52 TCGA-75-6211-01 5 1201769 1201769 G T SLC6A19 Missense_Mutation p.V2L 0.16 tolerated_low_confidence(0.12) benign(0.008) TCGA-75-6211-01 5 127641204 127641204 T C FBN2 Silent p.V1891V 0.36 TCGA-75-6211-01 5 137593573 137593573 C A GFRA3 Missense_Mutation p.K180N 0.19 tolerated(0.08) probably_damaging(0.971) TCGA-75-6211-01 5 140175015 140175015 G T PCDHA2 Nonsense_Mutation p.G156* 0.45 TCGA-75-6211-01 5 140474663 140474663 C A PCDHB2 Missense_Mutation p.L97M 0.33 deleterious_low_confidence(0.03) probably_damaging(0.936) TCGA-75-6211-01 5 140589646 140589646 C T PCDHB12 Silent p.I389I 0.22 TCGA-75-6211-01 5 140589974 140589974 C T PCDHB12 Missense_Mutation p.P499S 0.27 tolerated_low_confidence(0.08) benign(0.285) TCGA-75-6211-01 5 140753949 140753949 C T PCDHGA6 Missense_Mutation p.P100L 0.22 deleterious_low_confidence(0.03) benign(0.004) TCGA-75-6211-01 5 14507306 14507306 G T TRIO Silent p.L2896L 0.32 TCGA-75-6211-01 5 156679713 156679713 G T ITK 3'UTR 0.39 TCGA-75-6211-01 5 169673105 169673105 T A C5orf58 Missense_Mutation p.S99R 0.17 tolerated_low_confidence(0.06) benign(0) TCGA-75-6211-01 5 169680125 169680125 C G LCP2 Missense_Mutation p.E415Q 0.20 tolerated(0.13) benign(0.13) TCGA-75-6211-01 5 176820729 176820729 C A SLC34A1 Missense_Mutation p.S324Y 0.11 tolerated(1) benign(0.001) TCGA-75-6211-01 5 35068324 35068324 C T PRLR Silent p.L283L 0.07 TCGA-75-6211-01 5 39390615 39390615 G A DAB2 Silent p.N131N 0.28 TCGA-75-6211-01 5 42718832 42718832 C T GHR Missense_Mutation p.T408I 0.14 tolerated(0.19) probably_damaging(0.982) TCGA-75-6211-01 5 74652176 74652176 G T HMGCR Missense_Mutation p.R630L 0.29 deleterious(0) probably_damaging(0.977) TCGA-75-6211-01 6 116441292 116441292 A G COL10A1 Missense_Mutation p.Y663H 0.15 deleterious(0) probably_damaging(0.942) TCGA-75-6211-01 6 136599090 136599090 G T BCLAF1 Missense_Mutation p.A310D 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.82) TCGA-75-6211-01 6 146350653 146350653 C G GRM1 5'UTR 0.24 TCGA-75-6211-01 6 15496943 15496943 G A JARID2 Missense_Mutation p.R496K 0.09 tolerated_low_confidence(0.05) benign(0.323) TCGA-75-6211-01 6 155458398 155458398 G T TIAM2 Missense_Mutation p.A428S 0.13 tolerated(0.88) benign(0.002) TCGA-75-6211-01 6 160499257 160499257 A T IGF2R Missense_Mutation p.S1781C 0.09 deleterious(0.03) possibly_damaging(0.871) TCGA-75-6211-01 6 161575192 161575192 C A AGPAT4 Nonsense_Mutation p.E167* 0.16 TCGA-75-6211-01 6 17539605 17539605 G T CAP2 Nonsense_Mutation p.E248* 0.25 TCGA-75-6211-01 6 26448954 26448954 A T BTN3A3 Splice_Site p.X313_splice 0.25 TCGA-75-6211-01 6 29408195 29408195 C A OR10C1 Missense_Mutation p.L135M 0.15 tolerated(1) benign(0.038) TCGA-75-6211-01 6 29430207 29430207 C T OR2H1 Nonsense_Mutation p.Q221* 0.11 TCGA-75-6211-01 6 47682320 47682320 G T GPR115 Missense_Mutation p.A447S 0.17 deleterious(0.02) possibly_damaging(0.819) TCGA-75-6211-01 6 50683135 50683135 C A TFAP2D Missense_Mutation p.L116M 0.26 tolerated(0.07) benign(0.165) TCGA-75-6211-01 6 50696702 50696702 C T TFAP2D Silent p.L244L 0.09 TCGA-75-6211-01 6 55406914 55406914 G A HMGCLL1 Missense_Mutation p.P75S 0.24 deleterious(0) probably_damaging(1) TCGA-75-6211-01 6 70890390 70890390 G T COL19A1 Missense_Mutation p.G917V 0.31 deleterious(0) probably_damaging(1) TCGA-75-6211-01 6 7393347 7393347 G T RIOK1 Missense_Mutation p.L29F 0.21 tolerated_low_confidence(0.16) benign(0.003) TCGA-75-6211-01 6 74183111 74183111 G T MTO1 Nonsense_Mutation p.E187* 0.37 TCGA-75-6211-01 6 76405596 76405596 C G SENP6 Missense_Mutation p.L718V 0.14 deleterious(0) probably_damaging(0.995) TCGA-75-6211-01 6 88123581 88123581 G T C6ORF165 Missense_Mutation p.K82N 0.21 deleterious(0.03) benign(0.423) TCGA-75-6211-01 6 89871553 89871553 A G PM20D2 Missense_Mutation p.Y367C 0.28 tolerated(0.05) probably_damaging(0.957) TCGA-75-6211-01 7 100676470 100676470 A C MUC17 Silent p.S591S 0.11 TCGA-75-6211-01 7 111368560 111368560 C A DOCK4 Nonsense_Mutation p.E1891* 0.24 TCGA-75-6211-01 7 112723599 112723599 A T GPR85 3'UTR 0.41 TCGA-75-6211-01 7 129842495 129842495 G A TMEM209 Missense_Mutation p.L70F 0.40 tolerated(0.39) benign(0.036) TCGA-75-6211-01 7 129950739 129950739 G A CPA4 Silent p.K302K 0.14 TCGA-75-6211-01 7 142124193 142124193 C T TRBV6-8 Silent p.R95R 0.15 TCGA-75-6211-01 7 142206723 142206723 C A TRBV10-2 Missense_Mutation p.Q44H 0.49 deleterious(0) probably_damaging(0.998) TCGA-75-6211-01 7 150649748 150649748 G T KCNH2 Missense_Mutation p.P441H 0.40 deleterious(0.02) benign(0.139) TCGA-75-6211-01 7 155095541 155095541 C T INSIG1 Intron 0.08 TCGA-75-6211-01 7 158534254 158534254 C A ESYT2 Missense_Mutation p.A737S 0.10 tolerated(0.62) possibly_damaging(0.868) TCGA-75-6211-01 7 18067064 18067064 A G PRPS1L1 Silent p.N114N 0.24 TCGA-75-6211-01 7 37780793 37780793 C A GPR141 Missense_Mutation p.N266K 0.05 deleterious(0) probably_damaging(1) TCGA-75-6211-01 7 40127867 40127867 A G CDK13 Missense_Mutation p.T1058A 0.09 deleterious(0.02) probably_damaging(0.98) TCGA-75-6211-01 7 44119252 44119252 T C POLM Missense_Mutation p.K187R 0.40 tolerated(0.13) benign(0.071) TCGA-75-6211-01 7 44560666 44560666 C A NPC1L1 Missense_Mutation p.R1002M 0.14 deleterious(0) probably_damaging(0.998) TCGA-75-6211-01 7 53104314 53104314 G T POM121L12 3'UTR 0.14 TCGA-75-6211-01 7 71142242 71142242 T A WBSCR17 Missense_Mutation p.L484Q 0.09 tolerated(0.57) benign(0.001) TCGA-75-6211-01 7 77261701 77261701 C T PTPN12 Missense_Mutation p.P678L 0.36 deleterious(0) probably_damaging(1) TCGA-75-6211-01 7 77378976 77378976 T C RSBN1L Silent p.Y313Y 0.40 TCGA-75-6211-01 8 101153696 101153696 G A FBXO43 Silent p.I262I 0.42 TCGA-75-6211-01 8 10470795 10470795 C G RP1L1 Silent p.T271T 0.34 TCGA-75-6211-01 8 105360984 105360984 G A DCSTAMP Silent p.T68T 0.07 TCGA-75-6211-01 8 110487490 110487490 G A PKHD1L1 Missense_Mutation p.G2917R 0.14 deleterious(0.01) probably_damaging(0.931) TCGA-75-6211-01 8 110520355 110520355 C T PKHD1L1 Missense_Mutation p.L3753F 0.14 tolerated(0.44) benign(0.032) TCGA-75-6211-01 8 113246614 113246614 T A CSMD3 Missense_Mutation p.N3574Y 0.09 deleterious(0.01) benign(0.017) TCGA-75-6211-01 8 121259871 121259871 G T COL14A1 Missense_Mutation p.Q833H 0.11 deleterious(0.01) possibly_damaging(0.797) TCGA-75-6211-01 8 19297443 19297443 C G CSGALNACT1 Splice_Site p.X284_splice 0.22 TCGA-75-6211-01 8 23711941 23711941 G T STC1 Silent p.S32S 0.17 TCGA-75-6211-01 8 27886883 27886883 C A NUGGC Missense_Mutation p.R685L 0.15 deleterious(0) possibly_damaging(0.758) TCGA-75-6211-01 8 30705647 30705647 C T TEX15 Missense_Mutation p.C296Y 0.35 tolerated(0.5) benign(0.015) TCGA-75-6211-01 8 36694348 36694348 C A KCNU1 Missense_Mutation p.T468N 0.39 tolerated(0.39) benign(0.006) TCGA-75-6211-01 8 39872871 39872871 G T IDO2 Missense_Mutation p.G338V 0.21 deleterious(0) possibly_damaging(0.845) TCGA-75-6211-01 8 49986879 49986879 C A C8orf22 Missense_Mutation p.L74M 0.10 deleterious(0.02) possibly_damaging(0.875) TCGA-75-6211-01 8 51621516 51621516 T C SNTG1 Missense_Mutation p.I421T 0.18 tolerated(1) benign(0.002) TCGA-75-6211-01 8 55370910 55370910 C A SOX17 Missense_Mutation p.P71Q 0.22 deleterious(0.02) benign(0.412) TCGA-75-6211-01 8 55537445 55537445 A T RP1 Missense_Mutation p.M335L 0.29 deleterious(0.01) possibly_damaging(0.53) TCGA-75-6211-01 8 63927974 63927974 C A GGH Nonsense_Mutation p.E292* 0.13 TCGA-75-6211-01 8 73848769 73848769 A T KCNB2 Silent p.L393L 0.31 TCGA-75-6211-01 8 73850219 73850219 G T KCNB2 Missense_Mutation p.D877Y 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.862) TCGA-75-6211-01 8 82370629 82370629 C T FABP9 Missense_Mutation p.E130K 0.12 tolerated(0.07) benign(0.018) TCGA-75-6211-01 8 87498840 87498840 C A RMDN1 Missense_Mutation p.R123L 0.44 deleterious(0) probably_damaging(0.988) TCGA-75-6211-01 8 88249219 88249219 T G CNBD1 Missense_Mutation p.L217R 0.47 deleterious(0) possibly_damaging(0.903) TCGA-75-6211-01 8 88249220 88249220 G A CNBD1 Silent p.L217L 0.47 TCGA-75-6211-01 8 94808196 94808196 G C TMEM67 Missense_Mutation p.G614A 0.14 tolerated(0.49) benign(0.021) TCGA-75-6211-01 9 107288787 107288787 T - OR13C4 Frame_Shift_Del p.H235Pfs*11 0.26 TCGA-75-6211-01 9 118164418 118164418 G - DEC1 3'UTR 0.09 TCGA-75-6211-01 9 119065156 119065156 C A PAPPA Missense_Mutation p.S1025Y 0.22 deleterious(0) possibly_damaging(0.608) TCGA-75-6211-01 9 119625875 119625875 G T ASTN2 Missense_Mutation p.S625Y 0.18 deleterious(0.01) unknown(0) TCGA-75-6211-01 9 120476448 120476448 C A TLR4 Nonsense_Mutation p.S681* 0.35 TCGA-75-6211-01 9 125288841 125288841 G A OR1N1 Silent p.C244C 0.18 TCGA-75-6211-01 9 135797349 135797349 C A TSC1 Nonsense_Mutation p.E174* 0.23 TCGA-75-6211-01 9 135976835 135976835 G A RALGDS Intron 0.18 TCGA-75-6211-01 9 138670655 138670655 C T KCNT1 Nonsense_Mutation p.Q906* 0.17 TCGA-75-6211-01 9 15784564 15784564 C T CCDC171 Missense_Mutation p.L1047F 0.38 tolerated(0.7) benign(0.028) TCGA-75-6211-01 9 33265066 33265066 G T CHMP5 5'UTR 0.36 TCGA-75-6211-01 9 33676393 33676393 G A PTENP1 RNA 0.35 TCGA-75-6211-01 X 100615743 100615743 T C BTK Missense_Mutation p.I197V 0.41 tolerated(0.36) benign(0) TCGA-75-6211-01 X 100617635 100617635 C G BTK Missense_Mutation p.C145S 0.16 tolerated(0.75) possibly_damaging(0.882) TCGA-75-6211-01 X 100630266 100630266 C A BTK Missense_Mutation p.A3S 0.10 tolerated(0.93) benign(0) TCGA-75-6211-01 X 106841315 106841315 C G FRMPD3 Missense_Mutation p.L769V 0.09 deleterious(0) probably_damaging(0.997) TCGA-75-6211-01 X 107018416 107018416 C A TSC22D3 Silent p.L78L 0.18 TCGA-75-6211-01 X 111698402 111698402 A T ZCCHC16 Missense_Mutation p.N149I 0.14 tolerated(0.67) probably_damaging(0.999) TCGA-75-6211-01 X 117526694 117526694 A C WDR44 Missense_Mutation p.S96R 0.16 tolerated_low_confidence(0.21) benign(0.001) TCGA-75-6211-01 X 118221771 118221771 C A KIAA1210 Missense_Mutation p.R1141L 0.17 deleterious(0.02) benign(0.091) TCGA-75-6211-01 X 119576490 119576490 C G LAMP2 Missense_Mutation p.E298Q 0.15 deleterious(0.03) benign(0.42) TCGA-75-6211-01 X 122616858 122616858 G A GRIA3 Missense_Mutation p.G883D 0.12 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-75-6211-01 X 123556416 123556416 T A TENM1 Missense_Mutation p.I1393F 0.12 deleterious(0) benign(0.446) TCGA-75-6211-01 X 128890490 128890490 C G XPNPEP2 Silent p.S442S 0.11 TCGA-75-6211-01 X 129290567 129290567 G T AIFM1 Missense_Mutation p.F39L 0.15 tolerated_low_confidence(1) benign(0) TCGA-75-6211-01 X 129629173 129629173 G T RP1-274L7.1 RNA 0.49 TCGA-75-6211-01 X 130678918 130678918 C A OR13H1 Missense_Mutation p.L291M 0.29 deleterious(0) probably_damaging(0.996) TCGA-75-6211-01 X 132887866 132887866 G T GPC3 Silent p.V225V 0.16 TCGA-75-6211-01 X 133988158 133988158 G T FAM122C Missense_Mutation p.M160I 0.16 deleterious(0.04) benign(0.005) TCGA-75-6211-01 X 135431279 135431279 C T GPR112 Missense_Mutation p.T1805I 0.28 tolerated(0.21) benign(0.018) TCGA-75-6211-01 X 142596980 142596980 T A SPANXN3 Silent p.V30V 0.10 TCGA-75-6211-01 X 18183163 18183163 G A BEND2 Missense_Mutation p.P789L 0.21 deleterious(0.01) benign(0.031) TCGA-75-6211-01 X 18260586 18260586 G T SCML2 Silent p.G649G 0.27 TCGA-75-6211-01 X 18260587 18260587 C T SCML2 Missense_Mutation p.G649D 0.26 deleterious(0.03) benign(0.049) TCGA-75-6211-01 X 18622582 18622582 C T CDKL5 Missense_Mutation p.T513I 0.16 deleterious_low_confidence(0) benign(0.008) TCGA-75-6211-01 X 18912309 18912309 C A PHKA2 Intron 0.31 TCGA-75-6211-01 X 19379644 19379644 C A MAP3K15 Silent p.R1249R 0.20 TCGA-75-6211-01 X 22292161 22292161 T A ZNF645 Silent p.S351S 0.30 TCGA-75-6211-01 X 30237051 30237051 G T MAGEB2 Missense_Mutation p.L118F 0.12 deleterious(0.03) possibly_damaging(0.896) TCGA-75-6211-01 X 30268940 30268940 G T MAGEB1 Missense_Mutation p.W110C 0.26 deleterious(0.01) benign(0.086) TCGA-75-6211-01 X 30326434 30326434 G T NR0B1 Silent p.A349A 0.33 TCGA-75-6211-01 X 31200972 31200972 C T DMD Missense_Mutation p.R3286K 0.35 benign(0.04) TCGA-75-6211-01 X 32305735 32305735 C A DMD Silent p.T2067T 0.33 TCGA-75-6211-01 X 32407765 32407765 C T DMD Silent p.K1457K 0.12 TCGA-75-6211-01 X 34962613 34962613 T A FAM47B Silent p.P555P 0.47 TCGA-75-6211-01 X 36122645 36122645 C A CHDC2 Nonsense_Mutation p.Y294* 0.27 TCGA-75-6211-01 X 37664382 37664382 C - CYBB Frame_Shift_Del p.Y425* 0.18 TCGA-75-6211-01 X 46433945 46433945 C A CHST7 Missense_Mutation p.F193L 0.33 deleterious(0) probably_damaging(0.997) TCGA-75-6211-01 X 47976475 47976475 A C SSX6 3'Flank 0.11 TCGA-75-6211-01 X 49965551 49965551 G T AKAP4 5'UTR 0.25 TCGA-75-6211-01 X 55033653 55033653 G T APEX2 Nonsense_Mutation p.E448* 0.17 TCGA-75-6211-01 X 57021331 57021331 C T SPIN3 Missense_Mutation p.G17D 0.23 tolerated(0.73) benign(0.001) TCGA-75-6211-01 X 76920220 76920220 G T ATRX Missense_Mutation p.S1286Y 0.17 possibly_damaging(0.897) TCGA-75-6211-01 X 77112246 77112246 C A MAGT1 Missense_Mutation p.W251L 0.21 deleterious(0) possibly_damaging(0.897) TCGA-75-6211-01 X 77275806 77275806 G T ATP7A Missense_Mutation p.G898W 0.13 deleterious(0) probably_damaging(1) TCGA-75-6211-01 X 77912628 77912628 G T ZCCHC5 Missense_Mutation p.H430Q 0.23 deleterious(0.05) possibly_damaging(0.64) TCGA-75-6211-01 X 78216521 78216521 C A P2RY10 Silent p.P168P 0.42 TCGA-75-6212-01 11 117784512 117784512 G A TMPRSS13 Silent p.C263C 0.19 TCGA-75-6212-01 11 65660407 65660407 C A FOSL1 Nonsense_Mutation p.G256* 0.06 TCGA-75-6212-01 14 63784452 63784452 C T GPHB5 RNA 0.10 TCGA-75-6212-01 14 65544746 65544748 CCG - MAX In_Frame_Del p.R60del 0.56 TCGA-75-6212-01 16 50667219 50667219 G A NKD1 Missense_Mutation p.D314N 0.14 tolerated(0.21) benign(0.436) TCGA-75-6212-01 19 37619247 37619247 T C ZNF420 Missense_Mutation p.C452R 0.16 deleterious(0) possibly_damaging(0.765) TCGA-75-6212-01 19 6919679 6919679 G A EMR1 Missense_Mutation p.R514Q 0.18 deleterious(0.01) probably_damaging(0.922) TCGA-75-6212-01 1 228459865 228459865 G A OBSCN Missense_Mutation p.G1977R 0.12 probably_damaging(0.994) TCGA-75-6212-01 20 23016703 23016703 G A SSTR4 Missense_Mutation p.A195T 0.24 tolerated(0.46) benign(0.062) TCGA-75-6212-01 21 26965143 26965143 G A MRPL39 Missense_Mutation p.S301F 0.24 deleterious(0) probably_damaging(0.998) TCGA-75-6212-01 22 45309828 45309828 C T PHF21B Silent p.Q235Q 0.16 TCGA-75-6212-01 2 231222646 231222646 C T SP140L Silent p.L78L 0.14 TCGA-75-6212-01 2 232458074 232458074 G A C2orf57 Missense_Mutation p.A138T 0.06 tolerated(0.26) possibly_damaging(0.908) TCGA-75-6212-01 3 47288871 47288871 C T KIF9 Missense_Mutation p.E409K 0.14 deleterious(0) benign(0.44) TCGA-75-6212-01 4 155508070 155508070 C T FGA Missense_Mutation p.V171M 0.21 deleterious(0) probably_damaging(0.926) TCGA-75-6212-01 4 87968334 87968334 C T AFF1 Missense_Mutation p.P216L 0.15 tolerated(0.15) benign(0.32) TCGA-75-6212-01 5 121297703 121297703 G - SRFBP1 5'UTR 0.10 TCGA-75-6212-01 5 68616341 68616341 A C CCDC125 Missense_Mutation p.S9R 0.21 tolerated_low_confidence(0.07) possibly_damaging(0.551) TCGA-75-6212-01 6 108042097 108042097 C A SCML4 Missense_Mutation p.L261F 0.15 tolerated(0.27) benign(0.008) TCGA-75-6212-01 7 55242469 55242478 TTAAGAGAAG C EGFR In_Frame_Del p.L747_A750delinsP 0.31 TCGA-75-6212-01 7 74114596 74114608 CACAGTGGTACCT - GTF2I Frame_Shift_Del p.T132Yfs*14 0.14 TCGA-75-6212-01 8 100836132 100836132 A G VPS13B Missense_Mutation p.I3111V 0.20 tolerated(0.29) benign(0) TCGA-75-6212-01 X 153132164 153132164 C T L1CAM Missense_Mutation p.V791I 0.10 tolerated(0.19) benign(0.05) TCGA-75-6212-01 X 85219008 85219008 G A CHM Missense_Mutation p.H122Y 0.16 deleterious(0.02) possibly_damaging(0.825) TCGA-75-6212-01 X 9661224 9661224 C T TBL1X Silent p.D309D 0.13 TCGA-75-6214-01 10 100189563 100189563 C T HPS1 Silent p.G284G 0.18 TCGA-75-6214-01 10 102276748 102276748 C T SEC31B 5'UTR 0.12 TCGA-75-6214-01 10 103294514 103294514 C T BTRC Silent p.T398T 0.04 TCGA-75-6214-01 10 104241875 104241875 C T ACTR1A Missense_Mutation p.E270K 0.18 tolerated(0.91) benign(0.143) TCGA-75-6214-01 10 105215366 105215366 C A CALHM1 Missense_Mutation p.D232Y 0.60 deleterious(0) probably_damaging(0.979) TCGA-75-6214-01 10 105330648 105330648 C T NEURL1 Silent p.F35F 0.04 TCGA-75-6214-01 10 108367034 108367034 G C SORCS1 Missense_Mutation p.H1019D 0.24 tolerated(0.31) benign(0.062) TCGA-75-6214-01 10 112838931 112838931 G T ADRA2A Missense_Mutation p.V393L 0.23 deleterious(0) probably_damaging(0.989) TCGA-75-6214-01 10 116061184 116061184 C T AFAP1L2 Missense_Mutation p.D491N 0.23 tolerated(0.2) probably_damaging(1) TCGA-75-6214-01 10 117075071 117075071 A G ATRNL1 Silent p.E954E 0.40 TCGA-75-6214-01 10 117853292 117853292 C A GFRA1 Missense_Mutation p.W312C 0.16 deleterious(0) probably_damaging(0.999) TCGA-75-6214-01 10 118319931 118319931 G C PNLIP Missense_Mutation p.W355S 0.50 deleterious(0) probably_damaging(0.995) TCGA-75-6214-01 10 1229041 1229041 G C ADARB2 3'UTR 0.18 TCGA-75-6214-01 10 123844559 123844559 G T TACC2 Missense_Mutation p.Q848H 0.43 benign(0.332) TCGA-75-6214-01 10 124457976 124457976 G C C10orf120 Missense_Mutation p.A94G 0.47 deleterious(0.01) possibly_damaging(0.572) TCGA-75-6214-01 10 124672499 124672499 A T FAM24A 3'UTR 0.10 TCGA-75-6214-01 10 15617523 15617523 C A ITGA8 Nonsense_Mutation p.E815* 0.16 TCGA-75-6214-01 10 17726723 17726723 C A STAM Missense_Mutation p.P59T 0.10 deleterious(0) probably_damaging(0.999) TCGA-75-6214-01 10 18250525 18250525 G T SLC39A12 Missense_Mutation p.A93S 0.36 tolerated(0.07) benign(0.271) TCGA-75-6214-01 10 22856817 22856817 C T PIP4K2A Missense_Mutation p.G214D 0.14 deleterious(0) probably_damaging(1) TCGA-75-6214-01 10 24762923 24762923 C G KIAA1217 Missense_Mutation p.P538R 0.46 deleterious(0) probably_damaging(1) TCGA-75-6214-01 10 255971 255971 T A ZMYND11 Missense_Mutation p.L87M 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-75-6214-01 10 29779846 29779846 G A SVIL Silent p.L1374L 0.11 TCGA-75-6214-01 10 31810622 31810622 G C ZEB1 Missense_Mutation p.E788Q 0.11 tolerated(0.46) benign(0.322) TCGA-75-6214-01 10 37430667 37430667 C A ANKRD30A Missense_Mutation p.P225H 0.14 tolerated(0.18) possibly_damaging(0.769) TCGA-75-6214-01 10 43622127 43622127 C T RET Silent p.L1048L 0.50 TCGA-75-6214-01 10 49414917 49414917 C T FRMPD2 Silent p.R557R 0.52 TCGA-75-6214-01 10 50691563 50691563 C A ERCC6 Splice_Site p.X608_splice 0.21 TCGA-75-6214-01 10 55617011 55617011 T C PCDH15 Missense_Mutation p.N1244D 0.16 tolerated(0.06) probably_damaging(0.991) TCGA-75-6214-01 10 56138692 56138692 C G PCDH15 Silent p.L56L 0.20 TCGA-75-6214-01 10 5929981 5929981 C G ANKRD16 Missense_Mutation p.E122Q 0.16 tolerated(0.43) benign(0.431) TCGA-75-6214-01 10 6063568 6063568 G T IL2RA Nonsense_Mutation p.C152* 0.27 TCGA-75-6214-01 10 61413889 61413889 C T SLC16A9 Missense_Mutation p.A299T 0.43 tolerated(0.07) benign(0.003) TCGA-75-6214-01 10 71681686 71681686 C A COL13A1 Missense_Mutation p.Q369K 0.52 tolerated(0.18) possibly_damaging(0.634) TCGA-75-6214-01 10 72360567 72360567 C T PRF1 Missense_Mutation p.C31Y 0.54 deleterious(0) probably_damaging(1) TCGA-75-6214-01 10 75005739 75005739 G A DNAJC9 Missense_Mutation p.P173S 0.24 deleterious(0.03) benign(0.411) TCGA-75-6214-01 10 75407041 75407041 G C SYNPO2L Missense_Mutation p.S790C 0.16 deleterious(0) probably_damaging(0.997) TCGA-75-6214-01 10 76788408 76788408 C T KAT6B Missense_Mutation p.P1276S 0.18 probably_damaging(0.999) TCGA-75-6214-01 10 7759635 7759635 C A ITIH2 Missense_Mutation p.L172I 0.21 tolerated(0.11) benign(0.197) TCGA-75-6214-01 10 7808025 7808025 C A KIN Missense_Mutation p.W280C 0.23 deleterious(0) probably_damaging(0.988) TCGA-75-6214-01 10 85984343 85984343 T C LRIT2 Missense_Mutation p.Q213R 0.09 deleterious(0.02) probably_damaging(0.954) TCGA-75-6214-01 10 85984344 85984344 G T LRIT2 Missense_Mutation p.Q213K 0.08 deleterious(0.02) possibly_damaging(0.869) TCGA-75-6214-01 10 87362310 87362310 G C GRID1 Missense_Mutation p.T917R 0.14 tolerated_low_confidence(0.13) benign(0.002) TCGA-75-6214-01 10 88419123 88419123 G T OPN4 Missense_Mutation p.R244L 0.25 deleterious(0) probably_damaging(1) TCGA-75-6214-01 10 91144305 91144305 C T IFIT1B Missense_Mutation p.S412F 0.46 deleterious(0.01) possibly_damaging(0.885) TCGA-75-6214-01 10 92679928 92679928 C T ANKRD1 Missense_Mutation p.E69K 0.22 tolerated(0.18) benign(0.071) TCGA-75-6214-01 10 95720628 95720628 G A PIPSL RNA 0.10 TCGA-75-6214-01 10 98380134 98380134 C T PIK3AP1 Missense_Mutation p.R639Q 0.48 deleterious(0) probably_damaging(1) TCGA-75-6214-01 11 106810187 106810187 T A GUCY1A2 Missense_Mutation p.K402M 0.17 deleterious(0.02) possibly_damaging(0.561) TCGA-75-6214-01 11 107676084 107676084 C T SLC35F2 Splice_Site p.X244_splice 0.41 TCGA-75-6214-01 11 108380380 108380380 G C EXPH5 Missense_Mutation p.P1952A 0.07 tolerated(0.05) possibly_damaging(0.558) TCGA-75-6214-01 11 113103515 113103515 G A NCAM1 Missense_Mutation p.E550K 0.22 deleterious(0) possibly_damaging(0.9) TCGA-75-6214-01 11 113780085 113780085 C A HTR3B Missense_Mutation p.Q41K 0.19 tolerated(0.76) benign(0.338) TCGA-75-6214-01 11 117389416 117389416 G T DSCAML1 Missense_Mutation p.F485L 0.19 tolerated(0.31) benign(0.043) TCGA-75-6214-01 11 117710367 117710367 G T FXYD6 Intron 0.31 TCGA-75-6214-01 11 118122970 118122970 G A MPZL3 Missense_Mutation p.L14F 0.08 tolerated(0.14) benign(0.004) TCGA-75-6214-01 11 118773142 118773142 C A BCL9L Missense_Mutation p.G437V 0.38 benign(0.01) TCGA-75-6214-01 11 124179778 124179778 C A OR8D1 Missense_Mutation p.K295N 0.21 deleterious(0.01) possibly_damaging(0.735) TCGA-75-6214-01 11 124180649 124180649 T A OR8D1 Missense_Mutation p.N5I 0.12 deleterious(0) probably_damaging(0.94) TCGA-75-6214-01 11 124294248 124294248 C A OR8B4 Missense_Mutation p.D174Y 0.33 deleterious_low_confidence(0) benign(0.002) TCGA-75-6214-01 11 124763875 124763875 C T ROBO4 Missense_Mutation p.R462K 0.24 tolerated(0.9) benign(0.004) TCGA-75-6214-01 11 124793277 124793277 C A HEPACAM Silent p.V254V 0.38 TCGA-75-6214-01 11 132204977 132204977 G C NTM Silent p.S335S 0.18 TCGA-75-6214-01 11 132399049 132399049 G A OPCML Silent p.D144D 0.24 TCGA-75-6214-01 11 134132438 134132438 C T ACAD8 Missense_Mutation p.H373Y 0.34 deleterious(0.05) possibly_damaging(0.716) TCGA-75-6214-01 11 18231703 18231703 C A RP11-113D6.10 3'UTR 0.14 TCGA-75-6214-01 11 20949981 20949981 C - NELL1 Frame_Shift_Del p.L319Sfs*31 0.24 TCGA-75-6214-01 11 26586850 26586850 C A MUC15 Nonsense_Mutation p.E213* 0.32 TCGA-75-6214-01 11 27378962 27378962 C T CCDC34 Silent p.L162L 0.31 TCGA-75-6214-01 11 30033093 30033093 C G KCNA4 Missense_Mutation p.C378S 0.36 deleterious(0) probably_damaging(0.994) TCGA-75-6214-01 11 30926552 30926552 C A DCDC1 Missense_Mutation p.G1422W 0.20 deleterious(0) probably_damaging(0.984) TCGA-75-6214-01 11 30926554 30926554 T A DCDC1 Missense_Mutation p.D1421V 0.17 deleterious(0.01) benign(0) TCGA-75-6214-01 11 33581407 33581407 C T KIAA1549L Missense_Mutation p.A1026V 0.26 tolerated(0.33) probably_damaging(0.998) TCGA-75-6214-01 11 35640940 35640940 G T FJX1 Silent p.V252V 0.33 TCGA-75-6214-01 11 375893 375893 C A B4GALNT4 Nonsense_Mutation p.C344* 0.19 TCGA-75-6214-01 11 379880 379880 C A B4GALNT4 Silent p.R835R 0.25 TCGA-75-6214-01 11 379894 379894 G A B4GALNT4 Silent p.Q839Q 0.26 TCGA-75-6214-01 11 379903 379903 G A B4GALNT4 Silent p.A842A 0.27 TCGA-75-6214-01 11 44104832 44104832 G T ACCS Missense_Mutation p.G409C 0.25 deleterious(0) probably_damaging(0.999) TCGA-75-6214-01 11 45937052 45937052 G A PEX16 Missense_Mutation p.P143S 0.37 tolerated(0.07) possibly_damaging(0.828) TCGA-75-6214-01 11 47463472 47463472 T A RAPSN Missense_Mutation p.E231V 0.37 deleterious(0.03) probably_damaging(0.983) TCGA-75-6214-01 11 47857258 47857258 G C NUP160 Missense_Mutation p.S349C 0.34 deleterious(0) probably_damaging(1) TCGA-75-6214-01 11 4825658 4825658 G A OR52R1 5'Flank 0.29 TCGA-75-6214-01 11 48347244 48347244 G T OR4C3 Missense_Mutation p.R251M 0.24 deleterious(0) probably_damaging(0.957) TCGA-75-6214-01 11 4936269 4936269 C A OR51G2 Missense_Mutation p.V209F 0.38 tolerated(0.08) possibly_damaging(0.749) TCGA-75-6214-01 11 4944910 4944910 G T OR51G1 Nonsense_Mutation p.Y220* 0.42 TCGA-75-6214-01 11 4944978 4944978 G T OR51G1 Missense_Mutation p.H198N 0.35 tolerated(0.25) benign(0.03) TCGA-75-6214-01 11 5529609 5529609 G T UBQLN3 Missense_Mutation p.Q394K 0.17 tolerated(0.09) benign(0.022) TCGA-75-6214-01 11 55563103 55563103 G T OR5D14 Missense_Mutation p.K24N 0.34 tolerated(0.1) benign(0) TCGA-75-6214-01 11 55563104 55563104 C T OR5D14 Missense_Mutation p.L25F 0.33 deleterious(0.05) benign(0.157) TCGA-75-6214-01 11 55587802 55587802 A T OR5D18 Missense_Mutation p.S233C 0.47 deleterious(0.05) benign(0.152) TCGA-75-6214-01 11 55595399 55595399 C A OR5L2 Missense_Mutation p.H235Q 0.40 tolerated(0.21) benign(0.175) TCGA-75-6214-01 11 55658693 55658693 C A TRIM51 Missense_Mutation p.P315H 0.24 tolerated(0.66) benign(0.009) TCGA-75-6214-01 11 55703105 55703105 G T OR5I1 Missense_Mutation p.L258I 0.22 tolerated(0.18) probably_damaging(0.998) TCGA-75-6214-01 11 55873187 55873187 T C OR8H2 Silent p.F223F 0.04 TCGA-75-6214-01 11 57088056 57088056 C A TNKS1BP1 Missense_Mutation p.L75F 0.45 tolerated(0.09) probably_damaging(0.978) TCGA-75-6214-01 11 57309022 57309022 C A SMTNL1 Missense_Mutation p.A15D 0.26 tolerated_low_confidence(0.09) benign(0.018) TCGA-75-6214-01 11 57309023 57309023 C A SMTNL1 Silent p.A15A 0.26 TCGA-75-6214-01 11 58723566 58723566 A T GLYATL1 3'UTR 0.39 TCGA-75-6214-01 11 59245074 59245074 C A OR4D10 Missense_Mutation p.P58T 0.32 deleterious(0.04) benign(0.384) TCGA-75-6214-01 11 59271114 59271114 C G OR4D11 Missense_Mutation p.D22E 0.27 tolerated(1) benign(0.001) TCGA-75-6214-01 11 61136241 61136241 C T TMEM138 3'UTR 0.32 TCGA-75-6214-01 11 61897893 61897893 G A INCENP Silent p.T298T 0.47 TCGA-75-6214-01 11 62159759 62159759 C T ASRGL1 3'UTR 0.07 TCGA-75-6214-01 11 64359265 64359265 G T SLC22A12 Silent p.P79P 0.12 TCGA-75-6214-01 11 64882807 64882807 G T TM7SF2 Missense_Mutation p.R305L 0.08 deleterious(0) probably_damaging(1) TCGA-75-6214-01 11 6501223 6501223 C G ARFIP2 Missense_Mutation p.G59R 0.14 tolerated(0.22) benign(0.094) TCGA-75-6214-01 11 66460452 66460452 C A SPTBN2 Missense_Mutation p.E1658D 0.72 tolerated(0.28) benign(0.001) TCGA-75-6214-01 11 6653736 6653736 G T DCHS1 Missense_Mutation p.P1003T 0.38 tolerated(0.08) benign(0.001) TCGA-75-6214-01 11 6661762 6661762 G T DCHS1 Silent p.S361S 0.30 TCGA-75-6214-01 11 6806516 6806516 C A OR2AG1 Missense_Mutation p.A83E 0.36 deleterious(0.01) benign(0.136) TCGA-75-6214-01 11 6867170 6867170 T A OR10A5 Missense_Mutation p.L86Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-75-6214-01 11 720113 720113 G T EPS8L2 Missense_Mutation p.D73Y 0.29 deleterious(0) probably_damaging(0.988) TCGA-75-6214-01 11 75438495 75438495 G C MOGAT2 Missense_Mutation p.E96Q 0.09 deleterious(0) possibly_damaging(0.826) TCGA-75-6214-01 11 77934641 77934641 G T GAB2 Missense_Mutation p.L462M 0.24 tolerated(0.16) probably_damaging(0.968) TCGA-75-6214-01 11 7982771 7982771 G T NLRP10 Missense_Mutation p.P130T 0.33 tolerated(0.07) benign(0.367) TCGA-75-6214-01 11 82705138 82705138 G A RAB30 Silent p.A40A 0.36 TCGA-75-6214-01 11 88961012 88961012 G T TYR Missense_Mutation p.G353V 0.32 deleterious(0) probably_damaging(0.959) TCGA-75-6214-01 11 99715877 99715877 G T CNTN5 Missense_Mutation p.D154Y 0.26 deleterious(0.01) possibly_damaging(0.872) TCGA-75-6214-01 12 102074275 102074275 C A MYBPC1 Missense_Mutation p.T1127K 0.56 deleterious(0.05) benign(0.155) TCGA-75-6214-01 12 10772611 10772611 T A STYK1 3'UTR 0.68 TCGA-75-6214-01 12 10955222 10955222 C A TAS2R7 5'UTR 0.57 TCGA-75-6214-01 12 109723185 109723185 G C FOXN4 Missense_Mutation p.I275M 0.19 deleterious(0) probably_damaging(0.999) TCGA-75-6214-01 12 111353570 111353570 T A MYL2 Missense_Mutation p.R40W 0.60 deleterious(0) probably_damaging(0.999) TCGA-75-6214-01 12 111779639 111779639 G T CUX2 Silent p.P1147P 0.66 TCGA-75-6214-01 12 112888228 112888228 A G PTPN11 Missense_Mutation p.M82V 0.58 tolerated(0.23) possibly_damaging(0.849) TCGA-75-6214-01 12 12629939 12629939 G A DUSP16 Missense_Mutation p.S609L 0.05 deleterious(0.01) possibly_damaging(0.846) TCGA-75-6214-01 12 130926751 130926751 G T RIMBP2 Silent p.R365R 0.73 TCGA-75-6214-01 12 133208909 133208909 C A POLE Missense_Mutation p.V2108L 0.64 tolerated(0.22) benign(0.09) TCGA-75-6214-01 12 18889244 18889244 C A PLCZ1 Missense_Mutation p.G16C 0.23 deleterious(0.01) possibly_damaging(0.711) TCGA-75-6214-01 12 23757416 23757416 G C SOX5 Missense_Mutation p.L357V 0.31 tolerated(0.59) benign(0.005) TCGA-75-6214-01 12 29649551 29649551 A C OVCH1 Missense_Mutation p.S41A 0.42 tolerated(0.22) benign(0.194) TCGA-75-6214-01 12 48527166 48527166 G A PFKM Missense_Mutation p.D237N 0.26 deleterious(0) probably_damaging(1) TCGA-75-6214-01 12 49691154 49691154 C T PRPH Silent p.L337L 0.12 TCGA-75-6214-01 12 52827609 52827609 G A KRT75 Silent p.F160F 0.13 TCGA-75-6214-01 12 53186142 53186142 G C KRT3 Missense_Mutation p.L357V 0.55 deleterious(0.01) probably_damaging(0.999) TCGA-75-6214-01 12 6457372 6457372 G A SCNN1A Silent p.F618F 0.16 TCGA-75-6214-01 12 6635486 6635486 C T NCAPD2 Silent p.L839L 0.63 TCGA-75-6214-01 12 69759413 69759413 G C YEATS4 Missense_Mutation p.D58H 0.59 deleterious(0) probably_damaging(0.973) TCGA-75-6214-01 12 70003877 70003877 C T LRRC10 Missense_Mutation p.D248N 0.29 tolerated(0.13) benign(0.003) TCGA-75-6214-01 12 71092123 71092123 G T PTPRR Missense_Mutation p.P401T 0.72 deleterious(0) probably_damaging(0.972) TCGA-75-6214-01 12 78515788 78515788 C T NAV3 Missense_Mutation p.S1273L 0.09 deleterious(0.01) possibly_damaging(0.687) TCGA-75-6214-01 12 86374139 86374139 G A MGAT4C Missense_Mutation p.S122L 0.16 deleterious(0) probably_damaging(1) TCGA-75-6214-01 12 91371958 91371958 C T EPYC Missense_Mutation p.E83K 0.11 tolerated(0.83) benign(0.008) TCGA-75-6214-01 12 94763742 94763742 C G CCDC41 Missense_Mutation p.S335T 0.09 tolerated(0.13) probably_damaging(0.993) TCGA-75-6214-01 13 101997749 101997749 C A NALCN Missense_Mutation p.A223S 0.29 deleterious(0.03) possibly_damaging(0.461) TCGA-75-6214-01 13 109779940 109779940 C A MYO16 Intron 0.52 TCGA-75-6214-01 13 111077165 111077165 G A COL4A2 Missense_Mutation p.D89N 0.20 possibly_damaging(0.89) TCGA-75-6214-01 13 111290599 111290599 G A CARKD Missense_Mutation p.D302N 0.03 tolerated(0.86) benign(0.149) TCGA-75-6214-01 13 111862229 111862229 G T ARHGEF7 Silent p.L137L 0.30 TCGA-75-6214-01 13 113681197 113681197 G T MCF2L Intron 0.45 TCGA-75-6214-01 13 114077292 114077292 C A ADPRHL1 Nonsense_Mutation p.E304* 0.34 TCGA-75-6214-01 13 114782760 114782760 C A RASA3 Missense_Mutation p.A387S 0.26 tolerated(0.48) probably_damaging(0.998) TCGA-75-6214-01 13 24415543 24415543 C A MIPEP Silent p.L397L 0.41 TCGA-75-6214-01 13 26116178 26116178 G A ATP8A2 Missense_Mutation p.G258E 0.34 tolerated(0.07) benign(0.139) TCGA-75-6214-01 13 31495911 31495911 C T MEDAG Silent p.L239L 0.23 TCGA-75-6214-01 13 33760024 33760024 G A STARD13 Intron 0.07 TCGA-75-6214-01 13 35683448 35683448 A G NBEA Missense_Mutation p.R568G 0.20 tolerated(0.09) probably_damaging(0.968) TCGA-75-6214-01 13 39540931 39540931 C A STOML3 3'UTR 0.15 TCGA-75-6214-01 13 43469156 43469156 C T EPSTI1 Missense_Mutation p.G313S 0.20 tolerated(0.11) benign(0.304) TCGA-75-6214-01 13 44455682 44455682 A T LACC1 Silent p.P187P 0.27 TCGA-75-6214-01 13 45517783 45517783 C T NUFIP1 Missense_Mutation p.V389I 0.06 tolerated(0.58) benign(0.003) TCGA-75-6214-01 13 50204848 50204848 G A ARL11 Missense_Mutation p.D89N 0.03 deleterious(0) probably_damaging(0.999) TCGA-75-6214-01 13 58298763 58298763 A G PCDH17 Missense_Mutation p.N939D 0.21 tolerated(0.11) benign(0.444) TCGA-75-6214-01 13 66879088 66879088 T G PCDH9 Missense_Mutation p.H1138P 0.27 deleterious(0) probably_damaging(0.998) TCGA-75-6214-01 13 77713445 77713445 C T MYCBP2 Silent p.L2477L 0.12 TCGA-75-6214-01 13 99534165 99534165 C A DOCK9 Missense_Mutation p.V886F 0.22 deleterious(0) probably_damaging(0.991) TCGA-75-6214-01 14 101348393 101348393 G T RTL1 Silent p.S911S 0.24 TCGA-75-6214-01 14 101416225 101416225 G A SNORD114-1 RNA 0.63 TCGA-75-6214-01 14 102493027 102493027 C T DYNC1H1 Silent p.H2918H 0.54 TCGA-75-6214-01 14 105350319 105350319 G A CEP170B Silent p.Q401Q 0.50 TCGA-75-6214-01 14 19988328 19988328 G T POTEM 3'UTR 0.24 TCGA-75-6214-01 14 20216521 20216521 C A OR4Q3 Missense_Mutation p.P312H 0.43 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-75-6214-01 14 20344728 20344728 T C OR4K2 Missense_Mutation p.I101T 0.32 deleterious(0) possibly_damaging(0.58) TCGA-75-6214-01 14 20585657 20585657 C A OR4K17 Missense_Mutation p.A31D 0.26 tolerated(0.22) benign(0.047) TCGA-75-6214-01 14 24534852 24534852 G C LRRC16B Missense_Mutation p.G1140R 0.59 deleterious(0.01) unknown(0) TCGA-75-6214-01 14 24679976 24679976 T C CHMP4A Splice_Site p.X163_splice 0.06 TCGA-75-6214-01 14 31592131 31592131 C T HECTD1 Missense_Mutation p.E1702K 0.21 tolerated(0.28) possibly_damaging(0.651) TCGA-75-6214-01 14 39304955 39304955 G T LINC00639 RNA 0.67 TCGA-75-6214-01 14 45584071 45584071 G C PRPF39 Missense_Mutation p.Q655H 0.06 tolerated(0.12) benign(0.007) TCGA-75-6214-01 14 65544682 65544682 G A MAX Nonsense_Mutation p.Q82* 0.60 TCGA-75-6214-01 14 72921245 72921245 T A RGS6 Missense_Mutation p.I65N 0.04 deleterious(0) possibly_damaging(0.853) TCGA-75-6214-01 14 95932297 95932297 C A SYNE3 Nonsense_Mutation p.E200* 0.22 TCGA-75-6214-01 14 96752139 96752139 C G ATG2B Missense_Mutation p.D2064H 0.20 deleterious(0) probably_damaging(0.996) TCGA-75-6214-01 14 99641922 99641922 C A BCL11B Silent p.T417T 0.76 TCGA-75-6214-01 15 102242533 102242533 T C TARSL2 Missense_Mutation p.Y377C 0.25 deleterious(0) probably_damaging(0.999) TCGA-75-6214-01 15 20666482 20666482 C A HERC2P3 RNA 0.32 TCGA-75-6214-01 15 22368735 22368735 C T OR4M2 Missense_Mutation p.H54Y 0.02 tolerated(0.4) possibly_damaging(0.841) TCGA-75-6214-01 15 22368914 22368914 C A OR4M2 Missense_Mutation p.F113L 0.14 tolerated(0.15) benign(0.22) TCGA-75-6214-01 15 23052651 23052651 G A NIPA1 Missense_Mutation p.P141L 0.35 deleterious(0) probably_damaging(0.999) TCGA-75-6214-01 15 25222062 25222062 A T SNRPN Silent p.G102G 0.22 TCGA-75-6214-01 15 25453294 25453294 G T SNORD115-21 RNA 0.05 TCGA-75-6214-01 15 25467422 25467422 C G SNORD115-27 3'Flank 0.31 TCGA-75-6214-01 15 28473435 28473435 C A HERC2 Missense_Mutation p.G1798V 0.30 benign(0.002) TCGA-75-6214-01 15 28493784 28493784 G A HERC2 Missense_Mutation p.S1050L 0.19 possibly_damaging(0.63) TCGA-75-6214-01 15 31197848 31197848 G C FAN1 Missense_Mutation p.D328H 0.06 tolerated(0.24) benign(0.001) TCGA-75-6214-01 15 34648927 34648927 T A NUTM1 Silent p.P878P 0.26 TCGA-75-6214-01 15 40068673 40068673 G C FSIP1 Nonsense_Mutation p.S18* 0.06 TCGA-75-6214-01 15 43817250 43817250 C A MAP1A Missense_Mutation p.D1193E 0.34 benign(0.057) TCGA-75-6214-01 15 44088828 44088828 A G SERINC4 Silent p.C351C 0.30 TCGA-75-6214-01 15 49620315 49620315 A T GALK2 Missense_Mutation p.T446S 0.31 tolerated(0.35) benign(0.404) TCGA-75-6214-01 15 50154487 50154487 T C ATP8B4 Silent p.A1084A 0.29 TCGA-75-6214-01 15 54542458 54542458 G T UNC13C Silent p.L1088L 0.17 TCGA-75-6214-01 15 58974496 58974496 A T ADAM10 Missense_Mutation p.M75K 0.37 deleterious(0) benign(0.433) TCGA-75-6214-01 15 62169227 62169227 T A VPS13C Missense_Mutation p.Q3390L 0.27 deleterious(0) probably_damaging(0.999) TCGA-75-6214-01 15 74043505 74043505 C - C15orf59 5'UTR 0.21 TCGA-75-6214-01 15 77324738 77324738 G A PSTPIP1 Intron 0.37 TCGA-75-6214-01 15 77425939 77425939 C T PEAK1 Missense_Mutation p.R1162K 0.16 tolerated(0.14) probably_damaging(0.99) TCGA-75-6214-01 15 79189475 79189475 G C MORF4L1 3'UTR 0.17 TCGA-75-6214-01 15 79291123 79291123 G A RASGRF1 Missense_Mutation p.R947C 0.18 deleterious(0.02) probably_damaging(0.921) TCGA-75-6214-01 15 82574765 82574765 G T FAM154B Missense_Mutation p.D187Y 0.32 deleterious(0) probably_damaging(0.998) TCGA-75-6214-01 15 83331452 83331452 C T AP3B2 Missense_Mutation p.E924K 0.24 tolerated(0.51) benign(0.305) TCGA-75-6214-01 15 84159574 84159574 G C SH3GL3 Intron 0.31 TCGA-75-6214-01 15 84909435 84909435 G C GOLGA6L4 Silent p.R443R 0.27 TCGA-75-6214-01 15 89381918 89381918 G C ACAN Missense_Mutation p.S32T 0.04 deleterious(0.02) unknown(0) TCGA-75-6214-01 15 89386626 89386626 C T ACAN Silent p.F266F 0.37 TCGA-75-6214-01 15 91561108 91561108 C T VPS33B Missense_Mutation p.G35E 0.05 deleterious(0.04) benign(0.232) TCGA-75-6214-01 16 10855248 10855248 G C NUBP1 Missense_Mutation p.E212Q 0.06 deleterious(0.04) probably_damaging(0.951) TCGA-75-6214-01 16 1129862 1129862 G A SSTR5 Missense_Mutation p.A332T 0.41 tolerated(0.56) benign(0.003) TCGA-75-6214-01 16 14280867 14280867 G T MKL2 Intron 0.31 TCGA-75-6214-01 16 1499037 1499037 T A CLCN7 Missense_Mutation p.N576I 0.14 deleterious(0) possibly_damaging(0.9) TCGA-75-6214-01 16 15023187 15023187 G T RP11-958N24.1 RNA 0.50 TCGA-75-6214-01 16 15023188 15023188 G T RP11-958N24.1 RNA 0.57 TCGA-75-6214-01 16 15844070 15844070 C A MYH11 Silent p.L668L 0.48 TCGA-75-6214-01 16 1634398 1634398 C T IFT140 Silent p.L393L 0.16 TCGA-75-6214-01 16 19089538 19089538 G A COQ7 3'UTR 0.44 TCGA-75-6214-01 16 1961980 1961980 C G HS3ST6 Missense_Mutation p.G183R 0.72 deleterious(0.02) possibly_damaging(0.614) TCGA-75-6214-01 16 20480947 20480947 G C ACSM2A Missense_Mutation p.D168H 0.16 deleterious(0) probably_damaging(1) TCGA-75-6214-01 16 20487072 20487072 G A ACSM2A Missense_Mutation p.E359K 0.14 deleterious(0) probably_damaging(0.983) TCGA-75-6214-01 16 20492161 20492161 C G ACSM2A Missense_Mutation p.S476W 0.14 deleterious(0.01) probably_damaging(0.959) TCGA-75-6214-01 16 20793094 20793094 A G ACSM3 Missense_Mutation p.Q335R 0.38 deleterious(0.05) benign(0.011) TCGA-75-6214-01 16 21031015 21031015 C A DNAH3 Missense_Mutation p.G1985C 0.05 deleterious(0) probably_damaging(0.992) TCGA-75-6214-01 16 21611105 21611105 G A METTL9 Silent p.L17L 0.18 TCGA-75-6214-01 16 22163858 22163858 T A VWA3A Missense_Mutation p.L1103Q 0.23 deleterious(0) probably_damaging(0.996) TCGA-75-6214-01 16 2239047 2239047 C T CASKIN1 Missense_Mutation p.G200S 0.19 probably_damaging(1) TCGA-75-6214-01 16 23713772 23713772 G T ERN2 Silent p.P388P 0.47 TCGA-75-6214-01 16 23766348 23766348 G C CHP2 5'UTR 0.18 TCGA-75-6214-01 16 24804935 24804935 C G TNRC6A Missense_Mutation p.S1106C 0.10 deleterious(0.01) possibly_damaging(0.863) TCGA-75-6214-01 16 27472818 27472818 G A GTF3C1 Silent p.F2061F 0.42 TCGA-75-6214-01 16 2749879 2749879 A T KCTD5 Missense_Mutation p.M171L 0.25 tolerated(0.09) benign(0.004) TCGA-75-6214-01 16 2813036 2813036 C T SRRM2 Missense_Mutation p.S836F 0.18 unknown(0) TCGA-75-6214-01 16 28950038 28950039 - C CD19 Frame_Shift_Ins p.Q513Pfs*14 0.34 TCGA-75-6214-01 16 31336590 31336590 C A ITGAM Missense_Mutation p.D791E 0.16 tolerated(0.35) benign(0.209) TCGA-75-6214-01 16 31374335 31374335 C - ITGAX Frame_Shift_Del p.H482Ifs*44 0.34 TCGA-75-6214-01 16 313761 313761 G T ITFG3 Missense_Mutation p.G392V 0.26 deleterious(0) probably_damaging(0.909) TCGA-75-6214-01 16 3790432 3790432 C G CREBBP Missense_Mutation p.K1367N 0.15 unknown(0) TCGA-75-6214-01 16 46633756 46633756 T A SHCBP1 Silent p.V444V 0.47 TCGA-75-6214-01 16 47117128 47117128 A T NETO2 3'UTR 0.43 TCGA-75-6214-01 16 4862237 4862237 T A GLYR1 Missense_Mutation p.R378W 0.24 deleterious(0) probably_damaging(0.991) TCGA-75-6214-01 16 50324508 50324509 GG T ADCY7 Frame_Shift_Del p.L104Ffs*62 0.40 TCGA-75-6214-01 16 55516994 55516994 C T MMP2 Silent p.N109N 0.17 TCGA-75-6214-01 16 55519238 55519238 G T MMP2 Missense_Mutation p.G186V 0.46 deleterious(0) probably_damaging(0.999) TCGA-75-6214-01 16 56704873 56704873 C G MT1H Missense_Mutation p.A53G 0.09 tolerated(0.14) unknown(0) TCGA-75-6214-01 16 58030659 58030659 T G ZNF319 Missense_Mutation p.H504P 0.45 deleterious(0) probably_damaging(0.999) TCGA-75-6214-01 16 66612833 66612833 G A CMTM1 Missense_Mutation p.E264K 0.17 tolerated(0.2) benign(0.056) TCGA-75-6214-01 16 70497154 70497154 A T FUK Missense_Mutation p.S21C 0.58 tolerated(0.09) benign(0.019) TCGA-75-6214-01 16 70908800 70908800 T A HYDIN Missense_Mutation p.E3527V 0.65 benign(0.014) TCGA-75-6214-01 16 75127513 75127513 G C ZNRF1 Missense_Mutation p.E156D 0.57 tolerated(0.77) benign(0.083) TCGA-75-6214-01 16 82182995 82182995 T A MPHOSPH6 Missense_Mutation p.Q90L 0.52 tolerated(0.4) benign(0.022) TCGA-75-6214-01 16 85814046 85814046 C A EMC8 Missense_Mutation p.A138S 0.25 tolerated(0.61) benign(0.002) TCGA-75-6214-01 16 88039714 88039714 G T BANP Silent p.R158R 0.56 TCGA-75-6214-01 16 89259965 89259965 G C CDH15 Missense_Mutation p.R648P 0.14 deleterious(0) probably_damaging(1) TCGA-75-6214-01 17 10265445 10265445 G A MYH13 Silent p.F165F 0.22 TCGA-75-6214-01 17 10351986 10351986 C A MYH4 Nonsense_Mutation p.E1494* 0.59 TCGA-75-6214-01 17 10360956 10360956 G T MYH4 Missense_Mutation p.L560I 0.08 deleterious(0.02) benign(0.04) TCGA-75-6214-01 17 10367813 10367813 C T MYH4 Silent p.E208E 0.62 TCGA-75-6214-01 17 10397893 10397893 G C MYH1 Missense_Mutation p.T1855S 0.60 tolerated(0.21) benign(0.019) TCGA-75-6214-01 17 15641379 15641379 G T TBC1D26 Missense_Mutation p.R89S 0.05 deleterious(0.02) benign(0.026) TCGA-75-6214-01 17 17174123 17174123 T C COPS3 Splice_Site p.X100_splice 0.25 TCGA-75-6214-01 17 19705183 19705183 C A ULK2 Nonsense_Mutation p.G450* 0.20 TCGA-75-6214-01 17 28405430 28405430 C A EFCAB5 Silent p.R979R 0.32 TCGA-75-6214-01 17 28651841 28651841 A T TMIGD1 Silent p.I211I 0.25 TCGA-75-6214-01 17 2995893 2995893 G T OR1D2 Missense_Mutation p.T133N 0.67 deleterious(0.05) benign(0.197) TCGA-75-6214-01 17 3336698 3336698 G T OR1E2 Missense_Mutation p.S146R 0.66 tolerated(0.25) benign(0.114) TCGA-75-6214-01 17 33475423 33475423 G T UNC45B Silent p.R47R 0.29 TCGA-75-6214-01 17 33501353 33501353 C A UNC45B Silent p.A643A 0.32 TCGA-75-6214-01 17 35609868 35609868 G A ACACA Nonsense_Mutation p.Q641* 0.05 TCGA-75-6214-01 17 3660400 3660400 G T ITGAE Missense_Mutation p.T350N 0.64 deleterious(0.01) possibly_damaging(0.843) TCGA-75-6214-01 17 36874193 36874193 G A MLLT6 Silent p.E643E 0.36 TCGA-75-6214-01 17 36991351 36991351 T C C17orf98 3'UTR 0.29 TCGA-75-6214-01 17 38233829 38233829 C T THRA Missense_Mutation p.H64Y 0.33 deleterious(0.01) probably_damaging(0.994) TCGA-75-6214-01 17 38574068 38574074 GAACCCT - TOP2A 5'UTR 0.15 TCGA-75-6214-01 17 39723617 39723617 C T KRT9 Missense_Mutation p.G594S 0.18 unknown(0) TCGA-75-6214-01 17 40820147 40820147 A T PLEKHH3 Nonstop_Mutation p.*794Rext*57 0.24 TCGA-75-6214-01 17 42390611 42390611 C A RUNDC3A Silent p.A121A 0.28 TCGA-75-6214-01 17 45738534 45738534 C A KPNB1 Missense_Mutation p.P229Q 0.22 tolerated(0.2) benign(0.032) TCGA-75-6214-01 17 45773462 45773462 G C TBKBP1 5'UTR 0.30 TCGA-75-6214-01 17 46690639 46690639 C A HOXB8 Missense_Mutation p.E219D 0.41 tolerated(0.49) possibly_damaging(0.899) TCGA-75-6214-01 17 48777142 48777142 G C ANKRD40 Missense_Mutation p.I132M 0.06 tolerated(0.21) benign(0.372) TCGA-75-6214-01 17 53398080 53398080 G T HLF Missense_Mutation p.R243L 0.13 deleterious(0) probably_damaging(0.999) TCGA-75-6214-01 17 54543802 54543802 G T ANKFN1 Missense_Mutation p.R551M 0.43 deleterious(0) possibly_damaging(0.846) TCGA-75-6214-01 17 56557394 56557394 G A HSF5 Missense_Mutation p.P262L 0.05 tolerated(0.09) probably_damaging(0.987) TCGA-75-6214-01 17 65163772 65163772 C T HELZ Missense_Mutation p.G524E 0.06 deleterious(0) probably_damaging(0.927) TCGA-75-6214-01 17 67170883 67170883 G A ABCA10 Silent p.L971L 0.03 TCGA-75-6214-01 17 7107548 7107548 G A DLG4 Silent p.V83V 0.35 TCGA-75-6214-01 17 73559175 73559175 G A LLGL2 Silent p.Q203Q 0.17 TCGA-75-6214-01 17 73831096 73831096 G C UNC13D Missense_Mutation p.L633V 0.12 tolerated(0.38) probably_damaging(0.927) TCGA-75-6214-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.63 deleterious(0) probably_damaging(0.997) TCGA-75-6214-01 17 76486888 76486888 G T DNAH17 Silent p.R2223R 0.35 TCGA-75-6214-01 17 79166565 79166565 C T AZI1 Silent p.E800E 0.09 TCGA-75-6214-01 17 79166570 79166570 C G AZI1 Missense_Mutation p.E799Q 0.09 tolerated(0.09) probably_damaging(0.96) TCGA-75-6214-01 17 80137053 80137053 C T CCDC57 Silent p.Q408Q 0.16 TCGA-75-6214-01 17 8044469 8044469 G C PER1 Missense_Mutation p.Q1264E 0.21 deleterious_low_confidence(0.05) possibly_damaging(0.759) TCGA-75-6214-01 18 13030463 13030463 G C CEP192 Splice_Site p.X464_splice 0.32 TCGA-75-6214-01 18 21192080 21192080 C A ANKRD29 Silent p.G266G 0.45 TCGA-75-6214-01 18 22804919 22804919 C G ZNF521 Missense_Mutation p.G988A 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-75-6214-01 18 28991203 28991203 C A DSG4 Missense_Mutation p.T735N 0.49 deleterious(0.03) benign(0.113) TCGA-75-6214-01 18 28991204 28991204 C G DSG4 Silent p.T735T 0.48 TCGA-75-6214-01 18 31324568 31324568 C G ASXL3 Missense_Mutation p.P1586A 0.84 benign(0.046) TCGA-75-6214-01 18 32391950 32391950 G T DTNA Missense_Mutation p.S159I 0.53 deleterious(0.01) benign(0.213) TCGA-75-6214-01 18 44559566 44559566 G C TCEB3B Missense_Mutation p.S690R 0.60 tolerated(0.09) benign(0.1) TCGA-75-6214-01 18 48422209 48422209 G A ME2 Missense_Mutation p.V7I 0.62 tolerated_low_confidence(0.78) benign(0) TCGA-75-6214-01 18 52942913 52942913 C A TCF4 Missense_Mutation p.L344F 0.51 deleterious(0) probably_damaging(0.943) TCGA-75-6214-01 18 5891789 5891789 C A TMEM200C Missense_Mutation p.A92S 0.67 tolerated(0.29) benign(0.013) TCGA-75-6214-01 18 61154262 61154262 C A SERPINB5 Nonsense_Mutation p.Y84* 0.63 TCGA-75-6214-01 18 61323253 61323253 T G SERPINB3 Missense_Mutation p.S271R 0.17 tolerated(0.06) possibly_damaging(0.588) TCGA-75-6214-01 18 77105831 77105831 G A ATP9B Missense_Mutation p.E892K 0.23 deleterious(0.03) benign(0.04) TCGA-75-6214-01 19 10334521 10334521 C G S1PR2 Nonstop_Mutation p.*354Sext*? 0.25 TCGA-75-6214-01 19 10677815 10677815 G C CDKN2D Silent p.L140L 0.22 TCGA-75-6214-01 19 1094056 1094056 G C POLR2E Missense_Mutation p.L27V 0.21 tolerated(0.16) benign(0.199) TCGA-75-6214-01 19 12735466 12735466 G T ZNF791 Nonsense_Mutation p.E45* 0.22 TCGA-75-6214-01 19 1434826 1434826 G T DAZAP1 Missense_Mutation p.G380V 0.54 tolerated_low_confidence(0.15) possibly_damaging(0.895) TCGA-75-6214-01 19 15508056 15508056 C A AKAP8L Missense_Mutation p.A481S 0.68 deleterious(0) benign(0.412) TCGA-75-6214-01 19 15648351 15648351 G T CYP4F22 Missense_Mutation p.G143W 0.66 deleterious(0) probably_damaging(1) TCGA-75-6214-01 19 15734818 15734818 C A CYP4F8 RNA 0.62 TCGA-75-6214-01 19 17628119 17628119 C T PGLS Missense_Mutation p.P140L 0.63 deleterious(0) probably_damaging(0.998) TCGA-75-6214-01 19 1954019 1954019 G T CSNK1G2 Intron 0.54 TCGA-75-6214-01 19 22157605 22157605 T C ZNF208 Missense_Mutation p.I77M 0.70 tolerated(0.95) benign(0.117) TCGA-75-6214-01 19 34291390 34291390 T C KCTD15 Missense_Mutation p.S11P 0.15 tolerated_low_confidence(0.11) benign(0.307) TCGA-75-6214-01 19 36230869 36230869 G A IGFLR1 Nonsense_Mutation p.Q155* 0.13 TCGA-75-6214-01 19 36342440 36342440 C - NPHS1 Frame_Shift_Del p.A65Pfs*63 0.35 TCGA-75-6214-01 19 36362795 36362795 G T APLP1 Missense_Mutation p.R236I 0.12 tolerated(0.14) possibly_damaging(0.812) TCGA-75-6214-01 19 36362806 36362806 G T APLP1 Missense_Mutation p.A240S 0.11 tolerated(0.59) benign(0.001) TCGA-75-6214-01 19 37676971 37676971 C G ZNF585B Missense_Mutation p.G490R 0.54 deleterious(0.03) probably_damaging(1) TCGA-75-6214-01 19 38190240 38190240 G C ZNF607 Silent p.L264L 0.12 TCGA-75-6214-01 19 38946102 38946102 C A RYR1 Missense_Mutation p.R530S 0.28 probably_damaging(0.998) TCGA-75-6214-01 19 38987127 38987127 C T RYR1 Missense_Mutation p.R2248C 0.25 benign(0.383) TCGA-75-6214-01 19 39052027 39052027 C G RYR1 Nonsense_Mutation p.S4186* 0.08 TCGA-75-6214-01 19 39433327 39433327 C G CTC-360G5.8 Missense_Mutation p.R158T 0.11 deleterious(0.03) benign(0.038) TCGA-75-6214-01 19 39948326 39948326 G C SUPT5H Missense_Mutation p.E85Q 0.17 deleterious(0.01) probably_damaging(0.928) TCGA-75-6214-01 19 40540207 40540207 C T ZNF780B 3'UTR 0.39 TCGA-75-6214-01 19 40587775 40587775 C T ZNF780A Silent p.E62E 0.18 TCGA-75-6214-01 19 42798342 42798342 G T CIC Nonsense_Mutation p.E1405* 0.61 TCGA-75-6214-01 19 44778564 44778564 G A ZNF233 Missense_Mutation p.R584K 0.20 tolerated(0.17) benign(0.005) TCGA-75-6214-01 19 4498882 4498882 G A HDGFRP2 Silent p.K515K 0.23 TCGA-75-6214-01 19 45028255 45028255 G T CEACAM20 RNA 0.54 TCGA-75-6214-01 19 47223829 47223829 C A STRN4 3'UTR 0.64 TCGA-75-6214-01 19 48925050 48925050 G T GRIN2D Missense_Mutation p.R700S 0.61 tolerated(0.18) benign(0.363) TCGA-75-6214-01 19 49535254 49535254 C G CGB2 5'UTR 0.57 TCGA-75-6214-01 19 50881788 50881788 C G NR1H2 Missense_Mutation p.S161C 0.26 deleterious(0) probably_damaging(0.96) TCGA-75-6214-01 19 51219610 51219610 G A SHANK1 Silent p.R127R 0.23 TCGA-75-6214-01 19 53885286 53885286 G A ZNF525 3'UTR 0.84 TCGA-75-6214-01 19 54744744 54744744 C A LILRA6 Missense_Mutation p.W306C 0.51 deleterious(0.01) probably_damaging(0.958) TCGA-75-6214-01 19 54803705 54803705 G A LILRA3 Missense_Mutation p.T40I 0.69 tolerated(0.21) benign(0.119) TCGA-75-6214-01 19 55086396 55086396 C A LILRA2 Missense_Mutation p.P184H 0.33 tolerated(0.12) probably_damaging(1) TCGA-75-6214-01 19 55258819 55258819 G A KIR2DL3 Missense_Mutation p.E233K 0.15 tolerated(0.18) probably_damaging(0.991) TCGA-75-6214-01 19 55264056 55264056 G T KIR2DL3 3'UTR 0.37 TCGA-75-6214-01 19 55451427 55451427 C A NLRP7 Missense_Mutation p.G254C 0.40 deleterious(0) probably_damaging(1) TCGA-75-6214-01 19 56114130 56114130 A G ZNF524 Missense_Mutation p.K218E 0.42 deleterious(0.01) possibly_damaging(0.773) TCGA-75-6214-01 19 56368933 56368933 C A NLRP4 Intron 0.43 TCGA-75-6214-01 19 56482046 56482046 C A NLRP8 Missense_Mutation p.Q840K 0.36 tolerated(0.26) benign(0.164) TCGA-75-6214-01 19 56539809 56539809 G T NLRP5 Missense_Mutation p.R737L 0.16 deleterious(0) probably_damaging(0.919) TCGA-75-6214-01 19 56572830 56572830 G A NLRP5 Missense_Mutation p.R1180Q 0.30 tolerated(0.49) benign(0.001) TCGA-75-6214-01 19 57286456 57286456 T A ZIM2 Missense_Mutation p.Q395L 0.36 tolerated(0.07) benign(0.276) TCGA-75-6214-01 19 57325561 57325561 C T PEG3 Missense_Mutation p.E1417K 0.17 deleterious(0.03) benign(0.221) TCGA-75-6214-01 19 57326225 57326225 C T PEG3 Silent p.G1195G 0.35 TCGA-75-6214-01 19 57328907 57328907 C A PEG3 Silent p.R301R 0.39 TCGA-75-6214-01 19 57672164 57672164 C A DUXA Missense_Mutation p.K9N 0.64 deleterious_low_confidence(0.02) benign(0.291) TCGA-75-6214-01 19 57765287 57765287 G T ZNF805 Missense_Mutation p.G367V 0.09 deleterious(0) possibly_damaging(0.854) TCGA-75-6214-01 19 6495195 6495195 C A TUBB4A Missense_Mutation p.A439S 0.66 tolerated_low_confidence(0.72) unknown(0) TCGA-75-6214-01 19 6750366 6750366 G A TRIP10 Missense_Mutation p.A431T 0.06 tolerated(0.21) benign(0.001) TCGA-75-6214-01 19 7805870 7805870 G A CD209 3'UTR 0.58 TCGA-75-6214-01 19 8615449 8615449 C A MYO1F Missense_Mutation p.D301Y 0.61 deleterious(0) possibly_damaging(0.702) TCGA-75-6214-01 19 9009594 9009594 C A MUC16 Missense_Mutation p.Q13044H 0.65 probably_damaging(0.976) TCGA-75-6214-01 19 9049824 9049824 G T MUC16 Missense_Mutation p.P10603T 0.65 benign(0) TCGA-75-6214-01 19 9073419 9073419 G A MUC16 Missense_Mutation p.T4676I 0.60 unknown(0) TCGA-75-6214-01 19 9362033 9362033 C A OR7E24 Missense_Mutation p.T105N 0.68 deleterious(0.02) possibly_damaging(0.781) TCGA-75-6214-01 1 100672042 100672042 C A DBT Missense_Mutation p.D390Y 0.29 deleterious(0) probably_damaging(0.948) TCGA-75-6214-01 1 101200239 101200239 C A VCAM1 Silent p.A658A 0.25 TCGA-75-6214-01 1 101200240 101200240 C A VCAM1 Missense_Mutation p.Q659K 0.25 deleterious(0.05) probably_damaging(0.93) TCGA-75-6214-01 1 101200241 101200241 A T VCAM1 Missense_Mutation p.Q659L 0.25 deleterious(0.04) probably_damaging(0.983) TCGA-75-6214-01 1 103355016 103355016 C A COL11A1 Missense_Mutation p.D1487Y 0.25 unknown(0) TCGA-75-6214-01 1 104112411 104112411 G A AMY2B Intron 0.08 TCGA-75-6214-01 1 110086457 110086457 C A GPR61 Silent p.A271A 0.35 TCGA-75-6214-01 1 12567033 12567033 C T VPS13D Silent p.L4307L 0.04 TCGA-75-6214-01 1 12638760 12638760 C G DHRS3 Missense_Mutation p.Q228H 0.06 deleterious(0.04) possibly_damaging(0.646) TCGA-75-6214-01 1 1268372 1268372 C A TAS1R3 Missense_Mutation p.N449K 0.60 deleterious(0.03) possibly_damaging(0.755) TCGA-75-6214-01 1 147230152 147230152 G T GJA5 3'UTR 0.53 TCGA-75-6214-01 1 147400587 147400587 C G GPR89B 5'UTR 0.51 TCGA-75-6214-01 1 152129352 152129352 G T RPTN Missense_Mutation p.L75I 0.45 deleterious(0) probably_damaging(0.925) TCGA-75-6214-01 1 153012673 153012673 G T SPRR2D Nonsense_Mutation p.C50* 0.39 TCGA-75-6214-01 1 154309845 154309845 A G ATP8B2 Missense_Mutation p.M320V 0.38 tolerated(0.19) benign(0.053) TCGA-75-6214-01 1 154744815 154744815 G A KCNN3 Missense_Mutation p.R362C 0.08 deleterious(0) possibly_damaging(0.897) TCGA-75-6214-01 1 155220573 155220573 C - FAM189B Frame_Shift_Del p.G335Vfs*105 0.30 TCGA-75-6214-01 1 155451617 155451617 T G ASH1L Silent p.P348P 0.42 TCGA-75-6214-01 1 157665859 157665859 A G FCRL3 Missense_Mutation p.L368P 0.10 tolerated(0.21) probably_damaging(0.996) TCGA-75-6214-01 1 158449719 158449719 C T OR10R2 Missense_Mutation p.P18S 0.16 tolerated(0.75) benign(0.002) TCGA-75-6214-01 1 158812024 158812024 C A MNDA Silent p.S27S 0.36 TCGA-75-6214-01 1 161163875 161163875 G T ADAMTS4 Silent p.P466P 0.35 TCGA-75-6214-01 1 163315606 163315606 G C NUF2 Missense_Mutation p.E316Q 0.21 deleterious(0.03) possibly_damaging(0.863) TCGA-75-6214-01 1 16375011 16375011 C T CLCNKB Nonsense_Mutation p.Q197* 0.23 TCGA-75-6214-01 1 166959053 166959053 C T MAEL Missense_Mutation p.P71L 0.51 tolerated(0.3) benign(0.101) TCGA-75-6214-01 1 171491391 171491391 A T PRRC2C Missense_Mutation p.T274S 0.07 unknown(0) TCGA-75-6214-01 1 17295727 17295727 G T CROCC Silent p.L1731L 0.76 TCGA-75-6214-01 1 173579283 173579283 T A ANKRD45 3'UTR 0.22 TCGA-75-6214-01 1 175046886 175046886 G T TNN Missense_Mutation p.R111L 0.31 deleterious(0.02) probably_damaging(1) TCGA-75-6214-01 1 175086186 175086186 C T TNN Missense_Mutation p.S744F 0.04 deleterious(0) probably_damaging(0.992) TCGA-75-6214-01 1 176526309 176526309 G T PAPPA2 Missense_Mutation p.R284L 0.47 deleterious(0) possibly_damaging(0.903) TCGA-75-6214-01 1 178425883 178425883 C T RASAL2 Missense_Mutation p.P747S 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-75-6214-01 1 181018349 181018349 G T MR1 Missense_Mutation p.A77S 0.41 tolerated(0.57) possibly_damaging(0.599) TCGA-75-6214-01 1 182545507 182545507 C T RNASEL Missense_Mutation p.M641I 0.21 deleterious(0.01) possibly_damaging(0.811) TCGA-75-6214-01 1 186120472 186120472 C T HMCN1 Missense_Mutation p.R4917C 0.24 probably_damaging(0.994) TCGA-75-6214-01 1 19446747 19446747 G A UBR4 Missense_Mutation p.R3413C 0.37 probably_damaging(0.963) TCGA-75-6214-01 1 196648785 196648785 G T CFH Nonsense_Mutation p.G218* 0.27 TCGA-75-6214-01 1 196953168 196953168 C A CFHR5 Missense_Mutation p.Q111K 0.40 tolerated(0.07) benign(0.031) TCGA-75-6214-01 1 196953194 196953194 C A CFHR5 Missense_Mutation p.S119R 0.44 tolerated(0.22) possibly_damaging(0.659) TCGA-75-6214-01 1 196953195 196953195 C A CFHR5 Missense_Mutation p.L120I 0.44 tolerated(0.39) probably_damaging(0.975) TCGA-75-6214-01 1 200959710 200959710 G T KIF21B Silent p.L943L 0.25 TCGA-75-6214-01 1 202861651 202861651 C G KLHL12 3'UTR 0.29 TCGA-75-6214-01 1 204971877 204971877 G T NFASC Splice_Site p.X1097_splice 0.06 TCGA-75-6214-01 1 204985433 204985433 C A NFASC Intron 0.36 TCGA-75-6214-01 1 206224768 206224771 GTCA - AVPR1B Frame_Shift_Del p.V110Sfs*18 0.20 TCGA-75-6214-01 1 207039976 207039976 C G IL20 Missense_Mutation p.L125V 0.46 tolerated(0.22) benign(0.198) TCGA-75-6214-01 1 209797302 209797302 C T LAMB3 Missense_Mutation p.E674K 0.29 tolerated(0.09) benign(0.11) TCGA-75-6214-01 1 21039953 21039953 C T KIF17 Silent p.K158K 0.64 TCGA-75-6214-01 1 215821958 215821958 G C USH2A Missense_Mutation p.L4832V 0.32 benign(0.02) TCGA-75-6214-01 1 215933050 215933050 C G USH2A Missense_Mutation p.G3728A 0.31 benign(0.14) TCGA-75-6214-01 1 218458660 218458660 T C RRP15 Translation_Start_Site p.M1? 0.27 deleterious_low_confidence(0) possibly_damaging(0.558) TCGA-75-6214-01 1 22310769 22310769 C T CELA3B Missense_Mutation p.S196F 0.29 tolerated(0.19) benign(0.003) TCGA-75-6214-01 1 226923860 226923860 C T ITPKB Missense_Mutation p.G434R 0.27 tolerated_low_confidence(0.64) benign(0) TCGA-75-6214-01 1 228547904 228547904 C G OBSCN Intron 0.24 TCGA-75-6214-01 1 229606485 229606485 G C NUP133 Missense_Mutation p.L640V 0.12 deleterious(0) probably_damaging(0.973) TCGA-75-6214-01 1 230492796 230492796 G A PGBD5 Silent p.L132L 0.16 TCGA-75-6214-01 1 231557539 231557539 G A EGLN1 Silent p.R32R 0.23 TCGA-75-6214-01 1 236157056 236157056 C A NID1 Missense_Mutation p.G882W 0.40 deleterious(0) probably_damaging(1) TCGA-75-6214-01 1 236646635 236646635 T C EDARADD 3'Flank 0.11 TCGA-75-6214-01 1 237777971 237777971 C A RYR2 Missense_Mutation p.P1848H 0.25 probably_damaging(0.99) TCGA-75-6214-01 1 238090676 238090676 G T RP11-193H5.1 RNA 0.47 TCGA-75-6214-01 1 245848725 245848725 G A KIF26B Missense_Mutation p.G814S 0.10 deleterious(0.01) unknown(0) TCGA-75-6214-01 1 246811011 246811011 C G CNST Nonsense_Mutation p.S503* 0.06 TCGA-75-6214-01 1 247201040 247201040 C A ZNF670 Missense_Mutation p.R294I 0.30 deleterious(0.02) benign(0.116) TCGA-75-6214-01 1 247264069 247264069 A G ZNF669 Silent p.Y334Y 0.45 TCGA-75-6214-01 1 247902086 247902086 T A OR14K1 Missense_Mutation p.M57K 0.28 deleterious(0.01) probably_damaging(0.986) TCGA-75-6214-01 1 248637229 248637229 C T OR2T3 Missense_Mutation p.S193F 0.36 deleterious(0) probably_damaging(0.999) TCGA-75-6214-01 1 26688394 26688394 C T ZNF683 Silent p.L421L 0.06 TCGA-75-6214-01 1 27278134 27278134 C T C1orf172 Silent p.K246K 0.13 TCGA-75-6214-01 1 27332471 27332471 C G FAM46B Silent p.L414L 0.22 TCGA-75-6214-01 1 31441035 31441035 C T PUM1 Intron 0.28 TCGA-75-6214-01 1 3319455 3319455 G T PRDM16 Silent p.A259A 0.72 TCGA-75-6214-01 1 34667797 34667797 G C C1orf94 Missense_Mutation p.W461C 0.31 deleterious(0) probably_damaging(1) TCGA-75-6214-01 1 35223715 35223715 G C GJB5 Missense_Mutation p.D262H 0.35 deleterious(0.02) possibly_damaging(0.522) TCGA-75-6214-01 1 38272561 38272561 G A YRDC Missense_Mutation p.L198F 0.04 tolerated(0.19) benign(0.035) TCGA-75-6214-01 1 43825182 43825182 A G CDC20 Missense_Mutation p.Q68R 0.31 tolerated(0.32) benign(0.065) TCGA-75-6214-01 1 43914143 43914143 C A SZT2 Silent p.I3262I 0.21 TCGA-75-6214-01 1 44064417 44064417 G T PTPRF Nonsense_Mutation p.E716* 0.51 TCGA-75-6214-01 1 45340286 45340286 C A EIF2B3 Intron 0.39 TCGA-75-6214-01 1 47144309 47144309 C T EFCAB14 Splice_Site p.X438_splice 0.23 TCGA-75-6214-01 1 53427299 53427299 A G SCP2 Missense_Mutation p.Y174C 0.20 deleterious(0) probably_damaging(1) TCGA-75-6214-01 1 53930348 53930348 C A DMRTB1 Nonsense_Mutation p.Y263* 0.24 TCGA-75-6214-01 1 55277833 55277833 C G C1orf177 Missense_Mutation p.P245A 0.41 deleterious(0.01) possibly_damaging(0.901) TCGA-75-6214-01 1 57257879 57257879 G T C1orf168 Missense_Mutation p.P203T 0.36 tolerated(0.18) benign(0.012) TCGA-75-6214-01 1 65143951 65143951 G T CACHD1 Missense_Mutation p.V1017L 0.20 tolerated(0.55) benign(0.019) TCGA-75-6214-01 1 66067536 66067536 C T LEPR Silent p.I432I 0.31 TCGA-75-6214-01 1 6653499 6653499 C G KLHL21 Missense_Mutation p.E574Q 0.04 tolerated_low_confidence(0.18) benign(0.036) TCGA-75-6214-01 1 67206405 67206405 G C SGIP1 Missense_Mutation p.G767R 0.32 deleterious(0) possibly_damaging(0.864) TCGA-75-6214-01 1 70484492 70484492 G T LRRC7 Missense_Mutation p.G433C 0.37 tolerated(0.05) possibly_damaging(0.751) TCGA-75-6214-01 1 75037660 75037660 G T C1orf173 Missense_Mutation p.A1245D 0.36 tolerated(0.06) benign(0.024) TCGA-75-6214-01 1 79358874 79358874 C T ELTD1 Missense_Mutation p.V584I 0.35 deleterious(0.04) possibly_damaging(0.536) TCGA-75-6214-01 1 89728468 89728468 C A GBP5 Missense_Mutation p.A455S 0.14 tolerated(0.05) possibly_damaging(0.847) TCGA-75-6214-01 1 89889938 89889938 G C GBP1P1 RNA 0.31 TCGA-75-6214-01 1 92430257 92430257 C T BRDT Missense_Mutation p.A89V 0.34 tolerated(0.77) benign(0.001) TCGA-75-6214-01 1 94467521 94467521 C A ABCA4 Missense_Mutation p.G2059C 0.30 deleterious(0) probably_damaging(1) TCGA-75-6214-01 1 95710108 95710108 C G RWDD3 Missense_Mutation p.L143V 0.06 tolerated(0.15) probably_damaging(0.998) TCGA-75-6214-01 1 99764620 99764620 G A LPPR4 Missense_Mutation p.A190T 0.21 deleterious(0.01) probably_damaging(1) TCGA-75-6214-01 20 10386212 10386212 C A MKKS Missense_Mutation p.G466C 0.32 deleterious(0) probably_damaging(0.999) TCGA-75-6214-01 20 1961233 1961233 G T PDYN Missense_Mutation p.D167E 0.29 tolerated(0.38) benign(0.004) TCGA-75-6214-01 20 20144808 20144808 T C C20orf26 Missense_Mutation p.Y381H 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-75-6214-01 20 21492565 21492565 C G NKX2-2 Missense_Mutation p.W273S 0.23 deleterious(0) probably_damaging(0.994) TCGA-75-6214-01 20 30432337 30432337 C A FOXS1 3'UTR 0.48 TCGA-75-6214-01 20 31825632 31825632 G T BPIFA1 Missense_Mutation p.A39S 0.56 tolerated(0.4) benign(0.004) TCGA-75-6214-01 20 32879309 32879309 C A AHCY Silent p.T158T 0.48 TCGA-75-6214-01 20 33578868 33578868 C A MYH7B Silent p.I751I 0.45 TCGA-75-6214-01 20 36965553 36965553 C T BPI Silent p.F477F 0.29 TCGA-75-6214-01 20 40714455 40714455 G T PTPRT Nonsense_Mutation p.C1295* 0.63 TCGA-75-6214-01 20 40770587 40770587 C A PTPRT Missense_Mutation p.R913L 0.18 tolerated(0.07) benign(0.361) TCGA-75-6214-01 20 42164887 42164887 G A L3MBTL1 Silent p.K670K 0.17 TCGA-75-6214-01 20 45130263 45130263 T C ZNF334 Missense_Mutation p.Y572C 0.50 deleterious(0.02) probably_damaging(0.979) TCGA-75-6214-01 20 4705236 4705236 C G PRND Silent p.V13V 0.07 TCGA-75-6214-01 20 4705248 4705248 C G PRND Silent p.L17L 0.06 TCGA-75-6214-01 20 47351100 47351100 C A PREX1 Missense_Mutation p.V168L 0.44 tolerated(0.15) possibly_damaging(0.547) TCGA-75-6214-01 20 48600685 48600685 C T SNAI1 Missense_Mutation p.P136L 0.20 tolerated(0.66) possibly_damaging(0.672) TCGA-75-6214-01 20 49225195 49225195 C G FAM65C Missense_Mutation p.E251D 0.21 deleterious(0.01) probably_damaging(1) TCGA-75-6214-01 20 50007939 50007939 C A NFATC2 Missense_Mutation p.Q924H 0.14 tolerated_low_confidence(0.06) probably_damaging(0.965) TCGA-75-6214-01 20 51870957 51870957 T A TSHZ2 Silent p.A320A 0.20 TCGA-75-6214-01 20 51872151 51872151 C A TSHZ2 Nonsense_Mutation p.C718* 0.57 TCGA-75-6214-01 20 56099351 56099351 C A CTCFL Intron 0.46 TCGA-75-6214-01 20 56099352 56099352 C A CTCFL Intron 0.46 TCGA-75-6214-01 20 56139383 56139383 G T PCK1 Missense_Mutation p.D374Y 0.56 deleterious(0) probably_damaging(0.927) TCGA-75-6214-01 20 57767170 57767170 C T ZNF831 Missense_Mutation p.L366F 0.38 deleterious(0.01) probably_damaging(0.991) TCGA-75-6214-01 20 61444777 61444777 C T OGFR Missense_Mutation p.P604S 0.35 deleterious_low_confidence(0) benign(0.013) TCGA-75-6214-01 20 61869809 61869809 T A BIRC7 Missense_Mutation p.S171T 0.35 tolerated(0.58) benign(0) TCGA-75-6214-01 20 62221554 62221554 G A GMEB2 Missense_Mutation p.S494L 0.17 deleterious(0.04) benign(0.022) TCGA-75-6214-01 21 10863013 10863013 C A IGHV1OR21-1 Missense_Mutation p.S103R 0.20 tolerated(0.16) benign(0.041) TCGA-75-6214-01 21 10907001 10907001 T A TPTE Missense_Mutation p.K520N 0.09 deleterious(0) probably_damaging(0.999) TCGA-75-6214-01 21 10933891 10933891 G T TPTE Missense_Mutation p.L330I 0.13 tolerated(0.12) benign(0.063) TCGA-75-6214-01 21 10934045 10934045 G T TPTE Missense_Mutation p.T311N 0.12 deleterious(0.01) possibly_damaging(0.855) TCGA-75-6214-01 21 15554145 15554145 G A LIPI Missense_Mutation p.P214S 0.07 tolerated(0.09) possibly_damaging(0.534) TCGA-75-6214-01 21 18937929 18937929 G T CXADR Missense_Mutation p.K339N 0.11 deleterious(0) possibly_damaging(0.889) TCGA-75-6214-01 21 19666671 19666671 C T TMPRSS15 Missense_Mutation p.G801D 0.11 deleterious(0.03) benign(0.016) TCGA-75-6214-01 21 28214825 28214825 G T ADAMTS1 Missense_Mutation p.L304M 0.67 tolerated(0.05) probably_damaging(0.992) TCGA-75-6214-01 21 31797877 31797877 G A KRTAP13-3 Silent p.S118S 0.64 TCGA-75-6214-01 21 31933555 31933555 G T KRTAP19-7 Missense_Mutation p.F18L 0.11 tolerated_low_confidence(0.29) unknown(0) TCGA-75-6214-01 21 32253354 32253354 A T KRTAP11-1 Nonstop_Mutation p.*164Kext*6 0.13 TCGA-75-6214-01 21 37408378 37408378 C A SETD4 3'UTR 0.61 TCGA-75-6214-01 21 38115717 38115717 C A SIM2 Missense_Mutation p.S343Y 0.14 deleterious(0) possibly_damaging(0.896) TCGA-75-6214-01 21 43766533 43766533 G T TFF2 3'UTR 0.10 TCGA-75-6214-01 21 45959964 45959964 C G KRTAP10-1 Missense_Mutation p.E24Q 0.62 deleterious(0.01) benign(0.403) TCGA-75-6214-01 21 45970704 45970704 G C KRTAP10-2 Missense_Mutation p.S213C 0.12 deleterious(0.03) unknown(0) TCGA-75-6214-01 21 45970938 45970938 G T KRTAP10-2 Missense_Mutation p.S135Y 0.03 deleterious(0.02) unknown(0) TCGA-75-6214-01 21 47421172 47421172 A T COL6A1 Nonsense_Mutation p.K610* 0.64 TCGA-75-6214-01 21 47552191 47552191 G A COL6A2 Missense_Mutation p.V929M 0.14 deleterious(0.05) probably_damaging(0.987) TCGA-75-6214-01 22 16287306 16287306 G T POTEH Missense_Mutation p.L194I 0.15 tolerated(0.14) probably_damaging(0.999) TCGA-75-6214-01 22 22730622 22730622 C T IGLV5-45 Silent p.L39L 0.56 TCGA-75-6214-01 22 23077296 23077296 C T IGLV2-18 Nonsense_Mutation p.Q25* 0.06 TCGA-75-6214-01 22 26995395 26995395 G - CRYBB1 3'UTR 0.27 TCGA-75-6214-01 22 31493257 31493257 G T SMTN Missense_Mutation p.G698C 0.51 deleterious(0) possibly_damaging(0.738) TCGA-75-6214-01 22 39497382 39497382 G C APOBEC3H Missense_Mutation p.K97N 0.19 tolerated(0.36) benign(0.241) TCGA-75-6214-01 22 42059851 42059851 A T XRCC6 3'UTR 0.40 TCGA-75-6214-01 22 44342711 44342711 G A PNPLA3 3'UTR 0.50 TCGA-75-6214-01 22 51014701 51014701 T C CPT1B Missense_Mutation p.K209E 0.33 tolerated(0.77) benign(0.002) TCGA-75-6214-01 2 113788630 113788630 T A IL36B Missense_Mutation p.K39M 0.53 deleterious_low_confidence(0.02) probably_damaging(0.947) TCGA-75-6214-01 2 118706927 118706927 G A CCDC93 Silent p.L371L 0.04 TCGA-75-6214-01 2 121747580 121747580 G A GLI2 Missense_Mutation p.A1364T 0.18 tolerated(0.26) benign(0.025) TCGA-75-6214-01 2 122493196 122493196 C A NIFK Missense_Mutation p.S79I 0.09 deleterious(0) probably_damaging(0.961) TCGA-75-6214-01 2 130951518 130951518 G T TUBA3E Silent p.A299A 0.57 TCGA-75-6214-01 2 135745613 135745613 G A MAP3K19 Missense_Mutation p.L277F 0.25 deleterious(0.04) probably_damaging(0.989) TCGA-75-6214-01 2 141660520 141660521 CA AAG LRP1B Frame_Shift_Ins p.L1245Pfs*2 0.10 TCGA-75-6214-01 2 144381793 144381793 G T ARHGAP15 Silent p.P365P 0.62 TCGA-75-6214-01 2 149243347 149243347 A G MBD5 Missense_Mutation p.H961R 0.10 tolerated_low_confidence(0.17) unknown(0) TCGA-75-6214-01 2 152543993 152543993 G A NEB Silent p.L859L 0.27 TCGA-75-6214-01 2 155711521 155711521 C G KCNJ3 Missense_Mutation p.S401C 0.04 tolerated(0.05) benign(0.417) TCGA-75-6214-01 2 160813066 160813066 C T PLA2R1 Missense_Mutation p.E993K 0.05 tolerated(0.54) benign(0.013) TCGA-75-6214-01 2 160813073 160813073 G A PLA2R1 Silent p.F990F 0.04 TCGA-75-6214-01 2 163004015 163004015 T A GCG Silent p.S34S 0.28 TCGA-75-6214-01 2 167108323 167108323 C T SCN9A Missense_Mutation p.E1131K 0.04 tolerated(0.59) benign(0.107) TCGA-75-6214-01 2 168099354 168099354 C - XIRP2 Frame_Shift_Del p.D487Mfs*12 0.42 TCGA-75-6214-01 2 175779854 175779854 A C CHN1 Missense_Mutation p.I64M 0.24 tolerated(0.13) benign(0.003) TCGA-75-6214-01 2 179325880 179325880 G A DFNB59 Missense_Mutation p.G313E 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-75-6214-01 2 179648873 179648873 T A TTN Missense_Mutation p.K900M 0.23 TCGA-75-6214-01 2 179736888 179736888 C A CCDC141 Missense_Mutation p.W684L 0.47 deleterious(0.01) possibly_damaging(0.755) TCGA-75-6214-01 2 185802298 185802298 G A ZNF804A Nonsense_Mutation p.W725* 0.21 TCGA-75-6214-01 2 189871112 189871112 T G COL3A1 Silent p.A1045A 0.20 TCGA-75-6214-01 2 189916209 189916209 T A COL5A2 Splice_Site p.X924_splice 0.19 TCGA-75-6214-01 2 191116925 191116925 C G HIBCH Missense_Mutation p.R209T 0.11 tolerated(0.32) benign(0) TCGA-75-6214-01 2 197706049 197706049 C T PGAP1 Missense_Mutation p.G893D 0.20 deleterious(0.04) possibly_damaging(0.544) TCGA-75-6214-01 2 201523948 201523948 G A AOX1 Missense_Mutation p.E1078K 0.04 tolerated(0.55) possibly_damaging(0.755) TCGA-75-6214-01 2 201761901 201761901 C G NIF3L1 Missense_Mutation p.H277D 0.19 deleterious(0.01) possibly_damaging(0.484) TCGA-75-6214-01 2 206610568 206610568 G A NRP2 Silent p.P580P 0.50 TCGA-75-6214-01 2 206610569 206610569 G T NRP2 Missense_Mutation p.A581S 0.50 tolerated(0.14) possibly_damaging(0.618) TCGA-75-6214-01 2 206869607 206869607 C A INO80D Missense_Mutation p.A857S 0.27 tolerated_low_confidence(0.1) benign(0.064) TCGA-75-6214-01 2 207452876 207452876 C A ADAM23 Missense_Mutation p.T617K 0.33 tolerated(0.36) benign(0.345) TCGA-75-6214-01 2 207652733 207652733 G C FASTKD2 Missense_Mutation p.R556T 0.22 tolerated(0.09) benign(0.049) TCGA-75-6214-01 2 21230494 21230494 G T APOB Silent p.A3082A 0.68 TCGA-75-6214-01 2 214794788 214794788 G T SPAG16 Missense_Mutation p.W440L 0.56 deleterious(0.03) probably_damaging(1) TCGA-75-6214-01 2 216965125 216965125 T C TMEM169 Missense_Mutation p.F252L 0.25 deleterious(0) probably_damaging(0.999) TCGA-75-6214-01 2 217279574 217279574 C T SMARCAL1 Silent p.A49A 0.49 TCGA-75-6214-01 2 218686627 218686627 T G TNS1 Silent p.T1032T 0.62 TCGA-75-6214-01 2 220355508 220355508 G T SPEG Missense_Mutation p.G3072V 0.46 possibly_damaging(0.793) TCGA-75-6214-01 2 220423027 220423027 C A OBSL1 Silent p.L1127L 0.32 TCGA-75-6214-01 2 227663465 227663465 C A IRS1 5'UTR 0.32 TCGA-75-6214-01 2 228004950 228004950 C A COL4A4 Missense_Mutation p.G40V 0.19 probably_damaging(0.965) TCGA-75-6214-01 2 228137787 228137787 G C COL4A3 Missense_Mutation p.Q627H 0.21 unknown(0) TCGA-75-6214-01 2 228228599 228228599 G A TM4SF20 Silent p.F177F 0.04 TCGA-75-6214-01 2 231067329 231067329 C T SP110 Silent p.A338A 0.23 TCGA-75-6214-01 2 234421213 234421213 A G USP40 Splice_Site p.X824_splice 0.34 TCGA-75-6214-01 2 237374189 237374189 C A IQCA1 Missense_Mutation p.E295D 0.46 deleterious(0.03) benign(0.32) TCGA-75-6214-01 2 238266025 238266025 C T COL6A3 Missense_Mutation p.G2183R 0.51 benign(0.39) TCGA-75-6214-01 2 27726468 27726468 G T GCKR Silent p.V244V 0.62 TCGA-75-6214-01 2 28635205 28635205 G C FOSL2 Missense_Mutation p.E291Q 0.36 deleterious(0.01) benign(0.398) TCGA-75-6214-01 2 30998891 30998891 C T CAPN13 Missense_Mutation p.A98T 0.09 deleterious(0.01) possibly_damaging(0.85) TCGA-75-6214-01 2 3193150 3193150 C A TSSC1 Silent p.V373V 0.55 TCGA-75-6214-01 2 32694557 32694557 A G BIRC6 Missense_Mutation p.I2074M 0.27 probably_damaging(0.991) TCGA-75-6214-01 2 33246069 33246069 C A LTBP1 Missense_Mutation p.T220K 0.57 tolerated(0.21) benign(0.002) TCGA-75-6214-01 2 37414550 37414550 T A SULT6B1 Missense_Mutation p.Y49F 0.66 tolerated(0.66) benign(0.005) TCGA-75-6214-01 2 50724658 50724658 C A NRXN1 Missense_Mutation p.G938C 0.61 deleterious(0) probably_damaging(0.998) TCGA-75-6214-01 2 54041746 54041746 T A ERLEC1 Silent p.T431T 0.56 TCGA-75-6214-01 2 58276092 58276092 G A VRK2 Silent p.L42L 0.29 TCGA-75-6214-01 2 64778637 64778637 C G AFTPH Missense_Mutation p.S10C 0.08 deleterious(0) probably_damaging(1) TCGA-75-6214-01 2 677366 677366 C G TMEM18 5'UTR 0.11 TCGA-75-6214-01 2 74709037 74709037 A C CCDC142 Missense_Mutation p.W310G 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-75-6214-01 2 84780069 84780069 G A DNAH6 Missense_Mutation p.E505K 0.04 tolerated(0.44) benign(0.025) TCGA-75-6214-01 2 85571210 85571210 C A RETSAT Missense_Mutation p.R482L 0.64 deleterious(0) probably_damaging(0.912) TCGA-75-6214-01 2 88828748 88828748 G T TEX37 Missense_Mutation p.R100L 0.11 tolerated_low_confidence(0.64) benign(0) TCGA-75-6214-01 2 88828927 88828927 C T TEX37 Missense_Mutation p.H160Y 0.24 tolerated_low_confidence(0.49) benign(0.177) TCGA-75-6214-01 2 89117929 89117929 C G AC096579.13 RNA 0.58 TCGA-75-6214-01 2 89185384 89185384 G T IGKV4-1 Missense_Mutation p.Q26H 0.06 deleterious(0) probably_damaging(1) TCGA-75-6214-01 2 89246937 89246937 C G IGKV1-5 Missense_Mutation p.S78T 0.29 tolerated(0.41) benign(0.007) TCGA-75-6214-01 2 90193406 90193406 A G IGKV1D-13 Silent p.Q111Q 0.23 TCGA-75-6214-01 2 90229437 90229437 G T IGKV1D-42 Missense_Mutation p.G86V 0.44 deleterious(0) probably_damaging(1) TCGA-75-6214-01 2 9572814 9572814 G A CPSF3 Silent p.V172V 0.05 TCGA-75-6214-01 2 95952274 95952274 C T PROM2 Silent p.L665L 0.21 TCGA-75-6214-01 2 96583663 96583663 C A ANKRD36C Nonsense_Mutation p.E763* 0.19 TCGA-75-6214-01 2 96657421 96657421 G A ANKRD36C Silent p.L12L 0.07 TCGA-75-6214-01 2 98709643 98709643 G T VWA3B Nonsense_Mutation p.E30* 0.14 TCGA-75-6214-01 3 100105689 100105689 G C TOMM70A Missense_Mutation p.S153C 0.05 deleterious(0.01) probably_damaging(0.995) TCGA-75-6214-01 3 100511545 100511545 C G ABI3BP Missense_Mutation p.K652N 0.06 deleterious(0.01) probably_damaging(0.95) TCGA-75-6214-01 3 102196379 102196379 C T ZPLD1 Missense_Mutation p.L405F 0.43 tolerated(1) benign(0.005) TCGA-75-6214-01 3 108353773 108353773 G T DZIP3 Missense_Mutation p.C291F 0.27 deleterious(0) possibly_damaging(0.542) TCGA-75-6214-01 3 115395427 115395427 G T GAP43 Missense_Mutation p.G236W 0.17 deleterious(0) possibly_damaging(0.813) TCGA-75-6214-01 3 115395428 115395428 G C GAP43 Missense_Mutation p.G236A 0.17 tolerated(1) benign(0.001) TCGA-75-6214-01 3 119545624 119545624 C A GSK3B 3'UTR 0.32 TCGA-75-6214-01 3 120764291 120764291 G A STXBP5L Missense_Mutation p.V127I 0.05 tolerated(0.28) probably_damaging(0.989) TCGA-75-6214-01 3 122002903 122002903 G T CASR Missense_Mutation p.R711L 0.25 tolerated(0.16) probably_damaging(0.95) TCGA-75-6214-01 3 124456947 124456947 G C UMPS Missense_Mutation p.K281N 0.24 deleterious(0) probably_damaging(1) TCGA-75-6214-01 3 126132992 126132992 C G CCDC37 Silent p.L65L 0.04 TCGA-75-6214-01 3 126133017 126133017 C G CCDC37 Missense_Mutation p.L74V 0.19 tolerated(0.1) benign(0.004) TCGA-75-6214-01 3 128623218 128623218 G A ACAD9 Intron 0.05 TCGA-75-6214-01 3 129137199 129137199 G A EFCAB12 Silent p.Y193Y 0.24 TCGA-75-6214-01 3 129695884 129695884 G A TRH Missense_Mutation p.R185H 0.38 deleterious(0.02) possibly_damaging(0.467) TCGA-75-6214-01 3 139171873 139171873 G T RBP2 3'UTR 0.45 TCGA-75-6214-01 3 142279124 142279124 A - ATR Frame_Shift_Del p.S508Lfs*5 0.28 TCGA-75-6214-01 3 151163029 151163029 G A IGSF10 Silent p.Y1580Y 0.04 TCGA-75-6214-01 3 155303979 155303979 C A PLCH1 Missense_Mutation p.V147L 0.39 tolerated(1) benign(0.026) TCGA-75-6214-01 3 157820646 157820646 C A SHOX2 Missense_Mutation p.D150Y 0.26 deleterious(0) benign(0.219) TCGA-75-6214-01 3 180364997 180364997 G A CCDC39 Missense_Mutation p.S466L 0.14 tolerated(0.05) benign(0.2) TCGA-75-6214-01 3 186038239 186038239 C T DGKG Missense_Mutation p.E4K 0.12 tolerated(0.75) benign(0.017) TCGA-75-6214-01 3 186508170 186508170 C A RFC4 Missense_Mutation p.G276V 0.30 tolerated(0.24) benign(0.003) TCGA-75-6214-01 3 190936629 190936629 G A OSTN Missense_Mutation p.D66N 0.43 deleterious(0.05) benign(0.082) TCGA-75-6214-01 3 195595457 195595457 G A TNK2 Missense_Mutation p.P634L 0.13 tolerated(0.71) benign(0.22) TCGA-75-6214-01 3 195713427 195713427 C A SDHAP1 RNA 0.16 TCGA-75-6214-01 3 23250330 23250330 G T UBE2E2 Missense_Mutation p.S47I 0.24 deleterious(0.02) benign(0.403) TCGA-75-6214-01 3 384676 384676 C T CHL1 Missense_Mutation p.A230V 0.23 tolerated(0.13) benign(0.007) TCGA-75-6214-01 3 38888582 38888582 G A SCN11A Missense_Mutation p.A1660V 0.36 deleterious(0) benign(0.423) TCGA-75-6214-01 3 39432974 39432974 A C SLC25A38 Missense_Mutation p.T107P 0.28 deleterious(0) probably_damaging(0.961) TCGA-75-6214-01 3 39543980 39543980 G A MOBP Intron 0.44 TCGA-75-6214-01 3 41266166 41266166 G A CTNNB1 Missense_Mutation p.E55K 0.28 tolerated(0.25) benign(0.206) TCGA-75-6214-01 3 47162371 47162371 G C SETD2 Nonsense_Mutation p.S1252* 0.21 TCGA-75-6214-01 3 47956430 47956430 C G MAP4 Splice_Site p.X626_splice 0.24 TCGA-75-6214-01 3 48699679 48699679 C G CELSR3 Missense_Mutation p.G130A 0.29 deleterious_low_confidence(0.02) benign(0.046) TCGA-75-6214-01 3 49152706 49152706 C A USP19 Silent p.A657A 0.23 TCGA-75-6214-01 3 49753568 49753568 G C RNF123 Missense_Mutation p.E1125Q 0.26 tolerated(0.49) benign(0.258) TCGA-75-6214-01 3 49755301 49755301 T C AMIGO3 3'UTR 0.23 TCGA-75-6214-01 3 52557671 52557671 C A STAB1 Missense_Mutation p.P2432T 0.24 deleterious(0.03) benign(0.046) TCGA-75-6214-01 3 52886638 52886638 C T TMEM110 Missense_Mutation p.E96K 0.04 tolerated(0.19) benign(0.004) TCGA-75-6214-01 3 73432844 73432844 G T PDZRN3 Missense_Mutation p.T958N 0.30 deleterious(0) probably_damaging(0.999) TCGA-75-6214-01 3 86028411 86028411 T A CADM2 Silent p.S349S 0.31 TCGA-75-6214-01 3 87017950 87017950 G C VGLL3 Missense_Mutation p.H243D 0.34 tolerated(0.12) possibly_damaging(0.53) TCGA-75-6214-01 3 95374118 95374118 T G MTHFD2P1 RNA 0.29 TCGA-75-6214-01 4 109663766 109663766 C T ETNPPL Missense_Mutation p.M458I 0.22 tolerated_low_confidence(0.06) benign(0.017) TCGA-75-6214-01 4 113356397 113356397 A T ALPK1 Missense_Mutation p.K1043I 0.24 deleterious(0) probably_damaging(0.992) TCGA-75-6214-01 4 114275772 114275772 G C ANK2 Missense_Mutation p.G2000R 0.25 probably_damaging(1) TCGA-75-6214-01 4 114899972 114899972 C T ARSJ Missense_Mutation p.A7T 0.29 deleterious_low_confidence(0.02) benign(0.01) TCGA-75-6214-01 4 121828674 121828674 C A PRDM5 Missense_Mutation p.M44I 0.19 deleterious_low_confidence(0.04) benign(0.004) TCGA-75-6214-01 4 123813428 123813428 C A FGF2 Nonsense_Mutation p.Y248* 0.30 TCGA-75-6214-01 4 13606479 13606479 C G BOD1L1 Missense_Mutation p.R682P 0.35 probably_damaging(0.952) TCGA-75-6214-01 4 1389250 1389250 G T CRIPAK Missense_Mutation p.M317I 0.42 tolerated(0.57) benign(0.002) TCGA-75-6214-01 4 1389251 1389251 G T CRIPAK Nonsense_Mutation p.E318* 0.42 TCGA-75-6214-01 4 143348574 143348574 G C INPP4B Intron 0.38 TCGA-75-6214-01 4 155180804 155180804 C A DCHS2 Missense_Mutation p.V1773L 0.41 deleterious(0.04) benign(0.335) TCGA-75-6214-01 4 155241958 155241958 G C DCHS2 Silent p.V1076V 0.06 TCGA-75-6214-01 4 155458507 155458507 C T PLRG1 Silent p.Q472Q 0.28 TCGA-75-6214-01 4 160274748 160274748 G C RAPGEF2 Missense_Mutation p.D1240H 0.08 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-75-6214-01 4 173269725 173269725 C T GALNTL6 Silent p.I146I 0.23 TCGA-75-6214-01 4 174448469 174448469 C A HAND2 Missense_Mutation p.G205C 0.32 deleterious(0) probably_damaging(0.999) TCGA-75-6214-01 4 175898632 175898632 C A ADAM29 Missense_Mutation p.N652K 0.42 tolerated(0.13) benign(0.067) TCGA-75-6214-01 4 177138085 177138085 A G ASB5 Missense_Mutation p.V249A 0.33 tolerated(0.3) benign(0.259) TCGA-75-6214-01 4 185691555 185691555 C G ACSL1 Missense_Mutation p.E331Q 0.31 tolerated(1) benign(0.017) TCGA-75-6214-01 4 189012758 189012758 G C TRIML2 Silent p.L311L 0.17 TCGA-75-6214-01 4 20530608 20530608 G C SLIT2 Missense_Mutation p.C500S 0.34 deleterious(0) probably_damaging(0.989) TCGA-75-6214-01 4 2130952 2130952 C A POLN Silent p.P607P 0.44 TCGA-75-6214-01 4 30724649 30724649 C A PCDH7 Missense_Mutation p.F535L 0.10 deleterious(0) probably_damaging(1) TCGA-75-6214-01 4 31144127 31144127 G T PCDH7 Missense_Mutation p.G1142W 0.38 deleterious(0) probably_damaging(1) TCGA-75-6214-01 4 46125841 46125841 C G GABRG1 Silent p.L30L 0.38 TCGA-75-6214-01 4 47593390 47593390 G A ATP10D Missense_Mutation p.E1425K 0.22 tolerated_low_confidence(0.57) benign(0) TCGA-75-6214-01 4 47877167 47877167 G A NFXL1 Silent p.I741I 0.15 TCGA-75-6214-01 4 5633709 5633709 C A EVC2 Missense_Mutation p.Q507H 0.26 deleterious(0) probably_damaging(0.946) TCGA-75-6214-01 4 57181263 57181263 C T KIAA1211 Missense_Mutation p.T532I 0.48 deleterious(0) possibly_damaging(0.702) TCGA-75-6214-01 4 62813870 62813870 G T LPHN3 Missense_Mutation p.R826L 0.21 deleterious(0.03) benign(0.07) TCGA-75-6214-01 4 66231705 66231705 T A EPHA5 Missense_Mutation p.E665D 0.24 tolerated(0.08) benign(0.022) TCGA-75-6214-01 4 68441185 68441185 T A STAP1 Missense_Mutation p.L92H 0.15 deleterious(0) probably_damaging(0.997) TCGA-75-6214-01 4 68459051 68459051 T C STAP1 Missense_Mutation p.I268T 0.22 deleterious(0.04) benign(0.282) TCGA-75-6214-01 4 68606141 68606141 G T GNRHR 3'UTR 0.19 TCGA-75-6214-01 4 6865424 6865424 G T KIAA0232 Silent p.R1105R 0.38 TCGA-75-6214-01 4 68725387 68725387 A T TMPRSS11D Silent p.R6R 0.31 TCGA-75-6214-01 4 71654656 71654656 G C RUFY3 Missense_Mutation p.R402T 0.05 deleterious(0) probably_damaging(0.999) TCGA-75-6214-01 4 84376882 84376882 C T HELQ 5'UTR 0.23 TCGA-75-6214-01 4 84377215 84377215 G A MRPS18C 5'UTR 0.19 TCGA-75-6214-01 4 85694065 85694065 G C WDFY3 Missense_Mutation p.S1591C 0.09 tolerated(0.08) benign(0.401) TCGA-75-6214-01 4 8603114 8603114 G C CPZ Missense_Mutation p.C129S 0.29 deleterious(0) probably_damaging(0.997) TCGA-75-6214-01 4 94032000 94032000 C A GRID2 Missense_Mutation p.L211I 0.27 deleterious(0.01) possibly_damaging(0.595) TCGA-75-6214-01 4 984068 984068 G T SLC26A1 Missense_Mutation p.S220Y 0.44 deleterious(0) probably_damaging(1) TCGA-75-6214-01 5 113740334 113740334 C A KCNN2 Missense_Mutation p.P261Q 0.20 deleterious(0) probably_damaging(0.991) TCGA-75-6214-01 5 113831915 113831915 C T KCNN2 3'UTR 0.45 TCGA-75-6214-01 5 118183839 118183839 C A DTWD2 Silent p.L224L 0.31 TCGA-75-6214-01 5 121188292 121188292 G T FTMT Missense_Mutation p.V212L 0.30 tolerated(0.31) benign(0.014) TCGA-75-6214-01 5 1243781 1243781 C A SLC6A18 Missense_Mutation p.L415I 0.24 tolerated(0.23) probably_damaging(0.992) TCGA-75-6214-01 5 126158531 126158531 A T LMNB1 Missense_Mutation p.Y482F 0.50 tolerated(0.14) benign(0.196) TCGA-75-6214-01 5 127614386 127614386 C A FBN2 Missense_Mutation p.G2429V 0.25 deleterious(0) probably_damaging(0.998) TCGA-75-6214-01 5 128362826 128362826 G T SLC27A6 Missense_Mutation p.G419V 0.23 deleterious(0) probably_damaging(0.998) TCGA-75-6214-01 5 129072886 129072886 C - ADAMTS19 Frame_Shift_Del p.Q1201Kfs*10 0.27 TCGA-75-6214-01 5 131007363 131007364 - T FNIP1 Frame_Shift_Ins p.I925Nfs*6 0.20 TCGA-75-6214-01 5 1318514 1318514 C G CLPTM1L Missense_Mutation p.E529D 0.14 tolerated(0.31) benign(0.002) TCGA-75-6214-01 5 131923747 131923747 C A RAD50 Silent p.L339L 0.27 TCGA-75-6214-01 5 134246156 134246156 G T PCBD2 Missense_Mutation p.Q72H 0.32 deleterious(0) probably_damaging(0.995) TCGA-75-6214-01 5 135231470 135231470 G A IL9 Silent p.L12L 0.21 TCGA-75-6214-01 5 135692704 135692704 G T TRPC7 Silent p.A124A 0.39 TCGA-75-6214-01 5 137243525 137243525 A G PKD2L2 Missense_Mutation p.D357G 0.29 deleterious(0) probably_damaging(0.933) TCGA-75-6214-01 5 140229520 140229520 G A PCDHA9 Silent p.R480R 0.26 TCGA-75-6214-01 5 140572234 140572234 G A PCDHB10 Missense_Mutation p.E37K 0.34 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-75-6214-01 5 140683179 140683179 T C SLC25A2 Missense_Mutation p.Y85C 0.09 deleterious(0) probably_damaging(0.999) TCGA-75-6214-01 5 140723888 140723888 C A PCDHGA3 Nonsense_Mutation p.C96* 0.33 TCGA-75-6214-01 5 140731136 140731136 C A PCDHGB1 Missense_Mutation p.H437N 0.26 tolerated(0.27) benign(0.081) TCGA-75-6214-01 5 141244125 141244125 T A PCDH1 Missense_Mutation p.S591C 0.10 tolerated(0.11) benign(0.029) TCGA-75-6214-01 5 145552329 145552329 T A LARS Missense_Mutation p.K45M 0.19 deleterious(0) probably_damaging(0.993) TCGA-75-6214-01 5 150914137 150914137 G A FAT2 Missense_Mutation p.A3087V 0.45 probably_damaging(1) TCGA-75-6214-01 5 16067857 16067857 C T MARCH11 Missense_Mutation p.R311H 0.47 deleterious(0.02) probably_damaging(0.999) TCGA-75-6214-01 5 161318005 161318005 C T GABRA1 Nonsense_Mutation p.Q269* 0.35 TCGA-75-6214-01 5 161569232 161569232 C A GABRG2 Missense_Mutation p.Q318K 0.21 deleterious(0) probably_damaging(0.989) TCGA-75-6214-01 5 161580209 161580209 C A GABRG2 Missense_Mutation p.D461E 0.33 tolerated(0.31) benign(0.373) TCGA-75-6214-01 5 167891839 167891839 G T WWC1 Nonsense_Mutation p.E1014* 0.32 TCGA-75-6214-01 5 169267840 169267840 G - DOCK2 Frame_Shift_Del p.D929Ifs*4 0.18 TCGA-75-6214-01 5 172660066 172660066 G T NKX2-5 Silent p.R161R 0.42 TCGA-75-6214-01 5 175392109 175392109 T C THOC3 Silent p.V158V 0.15 TCGA-75-6214-01 5 178416024 178416024 G T GRM6 Silent p.L422L 0.25 TCGA-75-6214-01 5 179143205 179143205 G A CANX Missense_Mutation p.R274H 0.06 tolerated(0.07) benign(0.002) TCGA-75-6214-01 5 26915767 26915768 GT - CDH9 Frame_Shift_Del p.T165Cfs*5 0.18 TCGA-75-6214-01 5 32126342 32126342 C A GOLPH3 Silent p.A291A 0.28 TCGA-75-6214-01 5 36677035 36677035 C A SLC1A3 Silent p.I203I 0.20 TCGA-75-6214-01 5 38967476 38967476 C T RICTOR Missense_Mutation p.E372K 0.11 deleterious(0.01) possibly_damaging(0.676) TCGA-75-6214-01 5 442504 442504 T A C5orf55 3'UTR 0.52 TCGA-75-6214-01 5 50685513 50685513 G - ISL1 Frame_Shift_Del p.H173Tfs*16 0.20 TCGA-75-6214-01 5 52206177 52206177 G T ITGA1 Silent p.L595L 0.33 TCGA-75-6214-01 5 54281066 54281066 C T ESM1 Missense_Mutation p.E94K 0.37 deleterious(0) benign(0.2) TCGA-75-6214-01 5 55077767 55077767 G A DDX4 Missense_Mutation p.G195S 0.25 tolerated(0.25) possibly_damaging(0.76) TCGA-75-6214-01 5 55407601 55407601 G T ANKRD55 Missense_Mutation p.P325H 0.32 deleterious(0) benign(0.023) TCGA-75-6214-01 5 64081337 64081337 G T CWC27 Missense_Mutation p.L142F 0.22 deleterious(0) probably_damaging(0.997) TCGA-75-6214-01 5 64492968 64492968 T A ADAMTS6 Missense_Mutation p.R862S 0.37 tolerated(0.33) benign(0.003) TCGA-75-6214-01 5 70671772 70671772 C A RP11-136K7.2 Intron 0.29 TCGA-75-6214-01 5 72874903 72874903 G C UTP15 Missense_Mutation p.R403T 0.06 deleterious(0) probably_damaging(0.993) TCGA-75-6214-01 5 7743826 7743826 G T ADCY2 Silent p.L639L 0.27 TCGA-75-6214-01 5 77523357 77523357 C A AP3B1 Splice_Site p.X126_splice 0.30 TCGA-75-6214-01 5 82940454 82940454 C T HAPLN1 Missense_Mutation p.G168E 0.38 deleterious(0) probably_damaging(0.913) TCGA-75-6214-01 5 90281197 90281197 G T GPR98 Nonsense_Mutation p.E6004* 0.24 TCGA-75-6214-01 6 106969284 106969284 G T AIM1 Missense_Mutation p.D993Y 0.60 deleterious(0) probably_damaging(0.94) TCGA-75-6214-01 6 108496054 108496054 G T NR2E1 Silent p.V62V 0.46 TCGA-75-6214-01 6 116432034 116432034 G T NT5DC1 Missense_Mutation p.M93I 0.08 tolerated(0.34) benign(0.063) TCGA-75-6214-01 6 129498924 129498924 C G LAMA2 Nonsense_Mutation p.Y460* 0.09 TCGA-75-6214-01 6 129498962 129498962 G A LAMA2 Missense_Mutation p.G473E 0.43 tolerated(0.28) possibly_damaging(0.568) TCGA-75-6214-01 6 132022492 132022492 G C OR2A4 Missense_Mutation p.P17R 0.16 tolerated(0.53) benign(0.002) TCGA-75-6214-01 6 138199845 138199845 G A TNFAIP3 Silent p.L421L 0.07 TCGA-75-6214-01 6 144758806 144758806 G C UTRN Missense_Mutation p.E389Q 0.07 deleterious(0.04) probably_damaging(0.999) TCGA-75-6214-01 6 145069583 145069583 G A UTRN Missense_Mutation p.R2714Q 0.10 deleterious(0.01) probably_damaging(0.964) TCGA-75-6214-01 6 152332868 152332868 G A ESR1 Missense_Mutation p.V392I 0.05 tolerated(0.58) benign(0.002) TCGA-75-6214-01 6 160500618 160500618 C T IGF2R Missense_Mutation p.R1829C 0.10 tolerated(0.05) possibly_damaging(0.868) TCGA-75-6214-01 6 17764912 17764912 G C KIF13A Missense_Mutation p.S1616C 0.10 tolerated_low_confidence(0.35) benign(0.002) TCGA-75-6214-01 6 25862648 25862648 T C SLC17A3 Missense_Mutation p.Y39C 0.54 deleterious(0.02) benign(0.043) TCGA-75-6214-01 6 26240785 26240785 G C HIST1H4F Silent p.V44V 0.06 TCGA-75-6214-01 6 26388325 26388325 C T BTN2A2 Missense_Mutation p.P176L 0.40 deleterious(0) probably_damaging(0.998) TCGA-75-6214-01 6 28227156 28227156 C T NKAPL Missense_Mutation p.P3S 0.30 tolerated_low_confidence(0.06) unknown(0) TCGA-75-6214-01 6 2892192 2892192 G C SERPINB9 Missense_Mutation p.Q200E 0.17 deleterious(0.01) possibly_damaging(0.847) TCGA-75-6214-01 6 29080009 29080010 GT - OR2J3 Frame_Shift_Del p.V116Pfs*8 0.24 TCGA-75-6214-01 6 29231795 29231795 A T XXbac-BPG308J9.3 RNA 0.36 TCGA-75-6214-01 6 30640537 30640537 G C DHX16 Missense_Mutation p.Q28E 0.29 tolerated(0.42) possibly_damaging(0.585) TCGA-75-6214-01 6 31743834 31743834 C T VWA7 Silent p.L140L 0.11 TCGA-75-6214-01 6 31836986 31836986 G A SLC44A4 Silent p.N393N 0.42 TCGA-75-6214-01 6 32166826 32166826 A G NOTCH4 Missense_Mutation p.I1471T 0.30 tolerated(0.05) benign(0.282) TCGA-75-6214-01 6 32803116 32803116 T A TAP2 Missense_Mutation p.S254C 0.44 deleterious(0.01) probably_damaging(0.95) TCGA-75-6214-01 6 36169050 36169050 G T BRPF3 Silent p.P317P 0.30 TCGA-75-6214-01 6 38840902 38840902 C T DNAH8 Silent p.L2269L 0.11 TCGA-75-6214-01 6 41712451 41712451 C G PGC Missense_Mutation p.W52S 0.12 tolerated(0.97) benign(0) TCGA-75-6214-01 6 42890948 42890948 C A PTCRA Missense_Mutation p.A81E 0.35 tolerated(0.46) possibly_damaging(0.495) TCGA-75-6214-01 6 43251532 43251532 G - TTBK1 Frame_Shift_Del p.A1019Pfs*75 0.14 TCGA-75-6214-01 6 43266202 43266202 C T SLC22A7 Missense_Mutation p.L36F 0.29 deleterious(0.02) benign(0.157) TCGA-75-6214-01 6 47200380 47200380 C G TNFRSF21 3'UTR 0.33 TCGA-75-6214-01 6 47763229 47763229 C A OPN5 Missense_Mutation p.S229Y 0.32 deleterious(0) probably_damaging(0.995) TCGA-75-6214-01 6 49676878 49676878 G C CRISP2 Missense_Mutation p.T11S 0.31 deleterious(0.03) unknown(0) TCGA-75-6214-01 6 49700930 49700930 A T CRISP3 Missense_Mutation p.Y190N 0.38 deleterious(0) probably_damaging(0.989) TCGA-75-6214-01 6 50683176 50683176 G A TFAP2D Silent p.E129E 0.16 TCGA-75-6214-01 6 51612726 51612726 C G PKHD1 Missense_Mutation p.D3230H 0.04 tolerated(0.14) probably_damaging(0.91) TCGA-75-6214-01 6 55142300 55142300 G C HCRTR2 Missense_Mutation p.Q295H 0.35 deleterious(0.04) probably_damaging(0.997) TCGA-75-6214-01 6 64421138 64421138 A G PHF3 Missense_Mutation p.S1293G 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-75-6214-01 6 66094307 66094307 C A EYS Missense_Mutation p.W424L 0.45 tolerated(0.64) benign(0.018) TCGA-75-6214-01 6 80634699 80634699 C T ELOVL4 Silent p.V113V 0.55 TCGA-75-6214-01 6 80878689 80878689 G T BCKDHB Missense_Mutation p.G192V 0.46 deleterious(0) probably_damaging(0.999) TCGA-75-6214-01 6 84618742 84618742 C G CYB5R4 Silent p.V115V 0.23 TCGA-75-6214-01 6 90394655 90394655 G C MDN1 Missense_Mutation p.F3923L 0.10 possibly_damaging(0.8) TCGA-75-6214-01 6 90577087 90577087 G C CASP8AP2 RNA 0.11 TCGA-75-6214-01 6 90577210 90577210 G A CASP8AP2 RNA 0.14 TCGA-75-6214-01 6 90642233 90642233 C G BACH2 Missense_Mutation p.R807T 0.04 tolerated(0.53) benign(0.002) TCGA-75-6214-01 7 100240848 100240848 G T ACTL6B 3'UTR 0.66 TCGA-75-6214-01 7 100681040 100681040 G T MUC17 Missense_Mutation p.A2115S 0.65 unknown(0) TCGA-75-6214-01 7 117007429 117007429 T C ASZ1 Missense_Mutation p.K418E 0.67 tolerated(0.19) benign(0.073) TCGA-75-6214-01 7 119914990 119914990 G - KCND2 Frame_Shift_Del p.K103Sfs*63 0.41 TCGA-75-6214-01 7 120935710 120935710 C T CPED1 3'UTR 0.05 TCGA-75-6214-01 7 126086280 126086280 C A GRM8 Silent p.V859V 0.64 TCGA-75-6214-01 7 127251249 127251249 G T PAX4 Missense_Mutation p.P301T 0.50 tolerated(0.06) benign(0.002) TCGA-75-6214-01 7 132193099 132193099 G A PLXNA4 Silent p.L118L 0.37 TCGA-75-6214-01 7 138958816 138958816 G A UBN2 Missense_Mutation p.A657T 0.56 tolerated(0.1) probably_damaging(0.995) TCGA-75-6214-01 7 142224008 142224008 C A TRBV11-1 Missense_Mutation p.W53C 0.49 deleterious(0.02) probably_damaging(0.928) TCGA-75-6214-01 7 143027884 143027884 G T CLCN1 Missense_Mutation p.E291D 0.72 deleterious(0) probably_damaging(1) TCGA-75-6214-01 7 143771609 143771609 G C OR2A25 Missense_Mutation p.Q99H 0.28 deleterious(0) probably_damaging(0.999) TCGA-75-6214-01 7 150878331 150878331 C T ASB10 Missense_Mutation p.E267K 0.16 deleterious(0.04) benign(0.005) TCGA-75-6214-01 7 15584521 15584521 G T AGMO Silent p.T95T 0.36 TCGA-75-6214-01 7 21723509 21723509 C G DNAH11 Missense_Mutation p.F1863L 0.10 benign(0.094) TCGA-75-6214-01 7 2608628 2608628 C T IQCE Missense_Mutation p.S42L 0.52 deleterious(0.01) probably_damaging(0.916) TCGA-75-6214-01 7 27203084 27203084 C A HOXA9 3'UTR 0.29 TCGA-75-6214-01 7 30058635 30058635 C T FKBP14 Missense_Mutation p.D152N 0.10 deleterious(0.03) probably_damaging(0.99) TCGA-75-6214-01 7 36194470 36194470 G T EEPD1 Missense_Mutation p.R179S 0.33 deleterious(0.01) benign(0.243) TCGA-75-6214-01 7 36438973 36438973 G T ANLN Missense_Mutation p.R153L 0.36 deleterious(0) probably_damaging(0.991) TCGA-75-6214-01 7 36763838 36763838 G T AOAH 5'UTR 0.39 TCGA-75-6214-01 7 38505777 38505777 G C AMPH Missense_Mutation p.A221G 0.32 tolerated(0.34) probably_damaging(0.959) TCGA-75-6214-01 7 43916471 43916471 C T URGCP Missense_Mutation p.G864D 0.04 tolerated(1) benign(0.004) TCGA-75-6214-01 7 44073792 44073792 T C RASA4CP RNA 0.57 TCGA-75-6214-01 7 47384412 47384412 G A TNS3 Missense_Mutation p.P864L 0.04 tolerated(0.08) benign(0.002) TCGA-75-6214-01 7 48046872 48046872 C A SUN3 Nonsense_Mutation p.E128* 0.45 TCGA-75-6214-01 7 51258687 51258687 G A COBL Missense_Mutation p.P182L 0.08 deleterious(0) probably_damaging(1) TCGA-75-6214-01 7 5662711 5662711 T A RNF216 Missense_Mutation p.Q851L 0.43 tolerated(0.08) benign(0.093) TCGA-75-6214-01 7 57522870 57522870 C A ZNF716 Missense_Mutation p.H86Q 0.37 deleterious(0.05) possibly_damaging(0.801) TCGA-75-6214-01 7 7412854 7412854 C A COL28A1 Missense_Mutation p.V895L 0.34 deleterious(0) possibly_damaging(0.589) TCGA-75-6214-01 7 75174446 75174446 C G HIP1 Missense_Mutation p.R867P 0.23 deleterious(0) probably_damaging(0.976) TCGA-75-6214-01 7 87199501 87199501 C A ABCB1 Nonsense_Mutation p.E109* 0.67 TCGA-75-6214-01 7 92762732 92762732 C T SAMD9L Silent p.L851L 0.27 TCGA-75-6214-01 7 97862266 97862266 T A TECPR1 Missense_Mutation p.H564L 0.05 tolerated(0.06) benign(0) TCGA-75-6214-01 7 98582624 98582624 G T TRRAP Nonsense_Mutation p.E3120* 0.34 TCGA-75-6214-01 8 10177447 10177447 C T MSRA Missense_Mutation p.T164I 0.20 tolerated(0.37) benign(0.084) TCGA-75-6214-01 8 104831621 104831621 C A RIMS2 Intron 0.33 TCGA-75-6214-01 8 10622982 10622982 C A PINX1 Missense_Mutation p.V306L 0.44 tolerated(0.26) benign(0.192) TCGA-75-6214-01 8 106813683 106813683 C T ZFPM2 Missense_Mutation p.P458L 0.27 deleterious(0.01) possibly_damaging(0.632) TCGA-75-6214-01 8 113293532 113293532 G T CSMD3 Silent p.R3127R 0.40 TCGA-75-6214-01 8 121209086 121209086 G T COL14A1 Missense_Mutation p.G165C 0.20 deleterious(0) probably_damaging(1) TCGA-75-6214-01 8 128750661 128750661 G T MYC Missense_Mutation p.K66N 0.37 deleterious(0) probably_damaging(0.986) TCGA-75-6214-01 8 133740123 133740123 T C TMEM71 Silent p.G180G 0.12 TCGA-75-6214-01 8 143996289 143996289 G T CYP11B2 Missense_Mutation p.L211M 0.35 deleterious(0) probably_damaging(1) TCGA-75-6214-01 8 143996511 143996511 C T CYP11B2 Silent p.G182G 0.11 TCGA-75-6214-01 8 144940824 144940824 G T EPPK1 Missense_Mutation p.L2200M 0.08 benign(0.066) TCGA-75-6214-01 8 144992484 144992484 G A PLEC Silent p.D3972D 0.09 TCGA-75-6214-01 8 145161115 145161115 G C MAF1 Missense_Mutation p.E117Q 0.07 tolerated(0.08) probably_damaging(0.984) TCGA-75-6214-01 8 145661726 145661726 G C TONSL Missense_Mutation p.P697R 0.18 tolerated(0.12) probably_damaging(0.939) TCGA-75-6214-01 8 17796488 17796488 G C PCM1 Silent p.G194G 0.50 TCGA-75-6214-01 8 25166439 25166439 A C DOCK5 Missense_Mutation p.Q397P 0.43 deleterious(0.02) benign(0.019) TCGA-75-6214-01 8 2976080 2976080 G T CSMD1 Missense_Mutation p.P2091T 0.41 benign(0.205) TCGA-75-6214-01 8 33369537 33369537 C T TTI2 Missense_Mutation p.E199K 0.30 tolerated(0.26) possibly_damaging(0.72) TCGA-75-6214-01 8 33416262 33416262 C A RNF122 Missense_Mutation p.S18I 0.24 tolerated_low_confidence(0.39) benign(0.005) TCGA-75-6214-01 8 39626924 39626924 C A ADAM2 Missense_Mutation p.C400F 0.23 deleterious(0) probably_damaging(0.996) TCGA-75-6214-01 8 41790299 41790299 G A KAT6A Silent p.P1813P 0.19 TCGA-75-6214-01 8 42608284 42608284 G T CHRNA6 3'UTR 0.48 TCGA-75-6214-01 8 43197344 43197344 A G POTEA RNA 0.55 TCGA-75-6214-01 8 48866220 48866220 C A PRKDC Missense_Mutation p.L227F 0.35 benign(0.322) TCGA-75-6214-01 8 55539407 55539407 G A RP1 Missense_Mutation p.E989K 0.30 tolerated(0.96) benign(0.004) TCGA-75-6214-01 8 61748754 61748754 A G CHD7 Missense_Mutation p.K1301E 0.58 possibly_damaging(0.867) TCGA-75-6214-01 8 6302793 6302793 A C MCPH1 Missense_Mutation p.D517A 0.41 tolerated(0.19) benign(0.121) TCGA-75-6214-01 8 70744678 70744678 G T SLCO5A1 Missense_Mutation p.N77K 0.61 tolerated_low_confidence(0.34) benign(0.008) TCGA-75-6214-01 8 88885206 88885206 C A DCAF4L2 Missense_Mutation p.V332L 0.40 deleterious(0) possibly_damaging(0.77) TCGA-75-6214-01 9 104356939 104356939 C A PPP3R2 Nonsense_Mutation p.E92* 0.67 TCGA-75-6214-01 9 114135595 114135595 C A KIAA0368 Silent p.R1601R 0.69 TCGA-75-6214-01 9 120475527 120475527 G C TLR4 Missense_Mutation p.S374T 0.65 tolerated(0.06) benign(0.154) TCGA-75-6214-01 9 121929747 121929747 C A BRINP1 Missense_Mutation p.G634V 0.66 tolerated(0.53) probably_damaging(0.972) TCGA-75-6214-01 9 134343086 134343086 G A PRRC2B Silent p.K619K 0.73 TCGA-75-6214-01 9 135554876 135554876 G C GTF3C4 Missense_Mutation p.E624Q 0.36 tolerated_low_confidence(0.15) benign(0.419) TCGA-75-6214-01 9 136384097 136384097 C A TMEM8C Missense_Mutation p.G100C 0.71 deleterious(0) probably_damaging(1) TCGA-75-6214-01 9 136555519 136555519 A G SARDH Silent p.S684S 0.16 TCGA-75-6214-01 9 140866024 140866024 G C CACNA1B Missense_Mutation p.R508P 0.76 tolerated(0.1) benign(0) TCGA-75-6214-01 9 16419222 16419222 G T BNC2 Missense_Mutation p.S1022Y 0.62 deleterious(0.03) possibly_damaging(0.598) TCGA-75-6214-01 9 2646540 2646540 A G VLDLR Missense_Mutation p.D564G 0.24 deleterious(0) probably_damaging(1) TCGA-75-6214-01 9 33988994 33988994 C T UBAP2 Missense_Mutation p.R140K 0.22 tolerated(0.21) possibly_damaging(0.621) TCGA-75-6214-01 9 35707125 35707125 C A TLN1 Silent p.L1633L 0.73 TCGA-75-6214-01 9 35753749 35753749 C T MSMP Silent p.E49E 0.69 TCGA-75-6214-01 9 79325435 79325435 C G PRUNE2 Missense_Mutation p.L585F 0.71 tolerated(0.14) possibly_damaging(0.839) TCGA-75-6214-01 9 8633370 8633370 G T PTPRD Missense_Mutation p.A100D 0.71 deleterious(0) probably_damaging(0.992) TCGA-75-6214-01 9 94499775 94499775 A T ROR2 Missense_Mutation p.C174S 0.62 deleterious(0) probably_damaging(1) TCGA-75-6214-01 X 102529380 102529380 C T TCEAL5 Missense_Mutation p.E38K 0.17 tolerated(0.15) benign(0.114) TCGA-75-6214-01 X 117032813 117032815 GAG AA KLHL13 3'UTR 0.36 TCGA-75-6214-01 X 118250488 118250488 G A KIAA1210 Silent p.P207P 0.47 TCGA-75-6214-01 X 120008850 120008850 C G CT47B1 Missense_Mutation p.E225D 0.08 tolerated(0.14) unknown(0) TCGA-75-6214-01 X 125299101 125299101 G T DCAF12L2 Silent p.A269A 0.32 TCGA-75-6214-01 X 125685659 125685659 G A DCAF12L1 Silent p.C311C 0.38 TCGA-75-6214-01 X 125685862 125685862 G T DCAF12L1 Missense_Mutation p.H244N 0.36 deleterious(0.01) probably_damaging(0.91) TCGA-75-6214-01 X 128884515 128884515 G C XPNPEP2 Missense_Mutation p.V237L 0.24 tolerated(0.95) benign(0.007) TCGA-75-6214-01 X 128945380 128945380 A C ZDHHC9 Splice_Site p.X294_splice 0.11 TCGA-75-6214-01 X 12904260 12904260 G A TLR7 Silent p.L211L 0.06 TCGA-75-6214-01 X 129148236 129148236 C T BCORL1 Silent p.S496S 0.16 TCGA-75-6214-01 X 12938346 12938346 T C TLR8 Missense_Mutation p.L396S 0.49 deleterious(0) probably_damaging(1) TCGA-75-6214-01 X 130410951 130410951 C A IGSF1 Missense_Mutation p.W862L 0.38 deleterious(0.01) probably_damaging(0.993) TCGA-75-6214-01 X 131234702 131234702 G A FRMD7 Missense_Mutation p.H34Y 0.25 deleterious(0) probably_damaging(0.996) TCGA-75-6214-01 X 131234703 131234703 G T FRMD7 Missense_Mutation p.S33R 0.25 tolerated(0.24) possibly_damaging(0.839) TCGA-75-6214-01 X 134991835 134991835 G T SAGE1 Missense_Mutation p.M540I 0.16 tolerated(0.1) possibly_damaging(0.584) TCGA-75-6214-01 X 135047014 135047014 C G MMGT1 3'UTR 0.17 TCGA-75-6214-01 X 135482067 135482067 G T GPR112 Missense_Mutation p.M2789I 0.18 deleterious(0.01) benign(0.014) TCGA-75-6214-01 X 136649403 136649403 C A ZIC3 Missense_Mutation p.H185N 0.21 deleterious(0.01) probably_damaging(0.954) TCGA-75-6214-01 X 136649405 136649405 C A ZIC3 Missense_Mutation p.H185Q 0.21 deleterious(0.01) probably_damaging(0.979) TCGA-75-6214-01 X 140993278 140993278 G T MAGEC1 Missense_Mutation p.D30Y 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.861) TCGA-75-6214-01 X 140995410 140995410 C T MAGEC1 Silent p.L740L 0.43 TCGA-75-6214-01 X 144905168 144905168 A T SLITRK2 Missense_Mutation p.N409Y 0.16 deleterious(0) probably_damaging(1) TCGA-75-6214-01 X 144905556 144905556 T G SLITRK2 Missense_Mutation p.M538R 0.15 deleterious(0) benign(0.105) TCGA-75-6214-01 X 144905908 144905908 G A SLITRK2 Silent p.R655R 0.10 TCGA-75-6214-01 X 147014083 147014083 A T FMR1 Missense_Mutation p.E257V 0.17 deleterious(0) probably_damaging(0.991) TCGA-75-6214-01 X 148035225 148035225 A T AFF2 Missense_Mutation p.T505S 0.04 tolerated(1) benign(0.279) TCGA-75-6214-01 X 149638404 149638404 C G MAMLD1 Missense_Mutation p.Q162E 0.13 tolerated(0.11) possibly_damaging(0.845) TCGA-75-6214-01 X 151303180 151303180 C T MAGEA10 Missense_Mutation p.E305K 0.06 deleterious(0) probably_damaging(0.998) TCGA-75-6214-01 X 151869911 151869911 T C MAGEA6 Missense_Mutation p.F201L 0.41 tolerated(1) benign(0.001) TCGA-75-6214-01 X 151870307 151870307 C A MAGEA6 3'UTR 0.37 TCGA-75-6214-01 X 151908883 151908883 G A CSAG1 Missense_Mutation p.R41Q 0.10 deleterious_low_confidence(0.02) probably_damaging(0.947) TCGA-75-6214-01 X 153590628 153590628 G T FLNA Missense_Mutation p.P880T 0.14 deleterious(0) probably_damaging(0.999) TCGA-75-6214-01 X 153676829 153676829 C A FAM50A Intron 0.15 TCGA-75-6214-01 X 153701144 153701144 C T PLXNA3 3'UTR 0.35 TCGA-75-6214-01 X 30237251 30237251 A T MAGEB2 Missense_Mutation p.D185V 0.46 deleterious(0.05) possibly_damaging(0.875) TCGA-75-6214-01 X 34961344 34961344 C A FAM47B Silent p.A132A 0.49 TCGA-75-6214-01 X 38158228 38158228 C G RPGR Missense_Mutation p.R409P 0.29 probably_damaging(0.998) TCGA-75-6214-01 X 47034417 47034417 G C RBM10 Splice_Site p.X168_splice 0.44 TCGA-75-6214-01 X 49076962 49076962 C T CACNA1F Missense_Mutation p.E797K 0.19 tolerated(0.69) benign(0.001) TCGA-75-6214-01 X 50085236 50085236 G T CCNB3 Missense_Mutation p.L1184F 0.47 deleterious(0) probably_damaging(1) TCGA-75-6214-01 X 51151342 51151342 G T CXorf67 Nonsense_Mutation p.E492* 0.34 TCGA-75-6214-01 X 55247847 55247847 C T PAGE5 Missense_Mutation p.S31L 0.07 tolerated(0.1) possibly_damaging(0.472) TCGA-75-6214-01 X 57935510 57935510 G T ZXDA Missense_Mutation p.P449T 0.06 deleterious(0) probably_damaging(1) TCGA-75-6214-01 X 5811608 5811608 C A NLGN4X Missense_Mutation p.Q567H 0.48 deleterious(0) probably_damaging(0.995) TCGA-75-6214-01 X 70320988 70320988 G T FOXO4 Missense_Mutation p.G303V 0.44 tolerated(0.09) benign(0.115) TCGA-75-6214-01 X 70341631 70341631 C T MED12 Missense_Mutation p.R356W 0.42 probably_damaging(0.998) TCGA-75-6214-01 X 70384145 70384145 G A NLGN3 Missense_Mutation p.V294I 0.15 tolerated(0.1) possibly_damaging(0.833) TCGA-75-6214-01 X 74648925 74648925 G C ZDHHC15 Missense_Mutation p.I197M 0.08 deleterious(0.01) probably_damaging(0.93) TCGA-75-6214-01 X 85149241 85149241 G A CHM Missense_Mutation p.R488W 0.55 deleterious(0.02) probably_damaging(1) TCGA-75-6214-01 Y 16952392 16952392 G T NLGN4Y Missense_Mutation p.Q567H 0.58 deleterious(0) probably_damaging(0.995) TCGA-75-7025-01 10 124399788 124399788 C T DMBT1 Missense_Mutation p.S2263L 0.07 tolerated(0.05) probably_damaging(0.987) TCGA-75-7025-01 10 96745823 96745823 C T CYP2C9 Silent p.L395L 0.05 TCGA-75-7025-01 12 56231671 56231671 G A MMP19 Missense_Mutation p.A339V 0.21 deleterious(0) probably_damaging(1) TCGA-75-7025-01 13 21375083 21375083 T C XPO4 Missense_Mutation p.I622V 0.06 tolerated(0.48) benign(0.002) TCGA-75-7025-01 14 56106693 56106693 G A KTN1 Missense_Mutation p.R629H 0.13 tolerated(1) benign(0) TCGA-75-7025-01 15 28447338 28447338 A G HERC2 Missense_Mutation p.L2513P 0.23 possibly_damaging(0.791) TCGA-75-7025-01 16 24358138 24358138 C T CACNG3 Nonsense_Mutation p.R99* 0.14 TCGA-75-7025-01 16 2550823 2550823 C T TBC1D24 Missense_Mutation p.A515V 0.18 deleterious(0) probably_damaging(0.984) TCGA-75-7025-01 16 53341792 53341792 A G CHD9 Missense_Mutation p.H2327R 0.21 unknown(0) TCGA-75-7025-01 17 60483983 60483983 A T EFCAB3 Missense_Mutation p.I263F 0.11 deleterious(0) possibly_damaging(0.691) TCGA-75-7025-01 17 61995414 61995414 G A GH1 Missense_Mutation p.P85L 0.14 deleterious(0.01) possibly_damaging(0.509) TCGA-75-7025-01 19 17476311 17476311 C T PLVAP Silent p.A321A 0.27 TCGA-75-7025-01 19 36430831 36430831 C T LRFN3 Silent p.L168L 0.31 TCGA-75-7025-01 1 108023306 108023306 C G NTNG1 Missense_Mutation p.C488W 0.10 deleterious(0) probably_damaging(0.999) TCGA-75-7025-01 1 115110739 115110739 T C BCAS2 3'UTR 0.03 TCGA-75-7025-01 1 116206601 116206601 G A VANGL1 Missense_Mutation p.R175Q 0.15 tolerated(0.34) benign(0.001) TCGA-75-7025-01 1 15987729 15987729 G A RSC1A1 Missense_Mutation p.D456N 0.30 tolerated(0.2) possibly_damaging(0.762) TCGA-75-7025-01 1 200559401 200559401 C T KIF14 Splice_Site p.X938_splice 0.07 TCGA-75-7025-01 1 247013024 247013024 C T AHCTF1 Missense_Mutation p.R2104H 0.07 deleterious(0.03) benign(0.01) TCGA-75-7025-01 1 34204868 34204868 G A CSMD2 Silent p.L707L 0.16 TCGA-75-7025-01 1 36068848 36068848 G T PSMB2 3'UTR 0.21 TCGA-75-7025-01 21 31913898 31913898 T C KRTAP19-6 3'UTR 0.24 TCGA-75-7025-01 2 128367204 128367205 - A MYO7B Nonsense_Mutation p.Y980* 0.25 TCGA-75-7025-01 2 80101465 80101465 T G CTNNA2 Missense_Mutation p.F283L 0.17 tolerated(0.28) benign(0.299) TCGA-75-7025-01 3 148744703 148744703 G A GYG1 Missense_Mutation p.D346N 0.21 tolerated(0.1) probably_damaging(0.947) TCGA-75-7025-01 3 185390422 185390422 G A IGF2BP2 Silent p.S369S 0.11 TCGA-75-7025-01 3 47098973 47098977 TATCA - SETD2 Frame_Shift_Del p.D2100Tfs*4 0.19 TCGA-75-7025-01 3 47162475 47162475 C T SETD2 Nonsense_Mutation p.W1217* 0.24 TCGA-75-7025-01 4 103517305 103517305 C A NFKB1 Missense_Mutation p.D437E 0.33 tolerated(0.39) benign(0.06) TCGA-75-7025-01 4 143114338 143114338 G A INPP4B Silent p.Y361Y 0.15 TCGA-75-7025-01 4 164507069 164507069 G A MARCH1 Silent p.C85C 0.28 TCGA-75-7025-01 4 8233746 8233746 C T SH3TC1 Silent p.A998A 0.32 TCGA-75-7025-01 4 95200144 95200144 A G SMARCAD1 Silent p.L789L 0.13 TCGA-75-7025-01 5 57790790 57790790 G A GAPT Missense_Mutation p.E143K 0.35 tolerated(0.25) benign(0.004) TCGA-75-7025-01 6 32803014 32803014 T C TAP2 Missense_Mutation p.I288V 0.26 tolerated(0.22) benign(0.015) TCGA-75-7025-01 6 33286535 33286535 G A DAXX Silent p.L736L 0.20 TCGA-75-7025-01 6 82933844 82933844 T G IBTK Missense_Mutation p.H295P 0.06 deleterious(0) probably_damaging(0.992) TCGA-75-7025-01 7 43484503 43484503 G A HECW1 Missense_Mutation p.A578T 0.19 tolerated_low_confidence(0.51) benign(0.001) TCGA-75-7025-01 7 55242465 55242479 GGAATTAAGAGAAGC - EGFR In_Frame_Del p.E746_A750del 0.35 TCGA-75-7025-01 8 109498762 109498762 G A EMC2 Missense_Mutation p.E277K 0.27 tolerated(0.55) benign(0.006) TCGA-75-7025-01 X 140953388 140953388 C T MAGEC3 Silent p.F85F 0.07 TCGA-75-7027-01 10 101439629 101439629 A T ENTPD7 Missense_Mutation p.E182V 0.34 deleterious(0) possibly_damaging(0.588) TCGA-75-7027-01 10 102763434 102763434 C G LZTS2 Silent p.S193S 0.17 TCGA-75-7027-01 10 118202577 118202577 C A PNLIPRP3 Missense_Mutation p.A72E 0.40 deleterious(0) benign(0.049) TCGA-75-7027-01 10 118969418 118969418 G T KCNK18 Nonsense_Mutation p.E255* 0.38 TCGA-75-7027-01 10 125526525 125526525 A G CPXM2 Silent p.I481I 0.36 TCGA-75-7027-01 10 128925932 128925932 G T DOCK1 Splice_Site p.X897_splice 0.24 TCGA-75-7027-01 10 15256130 15256130 C A FAM171A1 Missense_Mutation p.R486M 0.24 deleterious(0) probably_damaging(0.941) TCGA-75-7027-01 10 16975228 16975228 C A CUBN Silent p.P1994P 0.26 TCGA-75-7027-01 10 25887469 25887469 A T GPR158 Nonsense_Mutation p.K972* 0.21 TCGA-75-7027-01 10 26581399 26581399 T A GAD2 Silent p.T464T 0.17 TCGA-75-7027-01 10 28527551 28527551 C A MPP7 5'UTR 0.51 TCGA-75-7027-01 10 30615475 30615475 C G MTPAP Missense_Mutation p.E290D 0.43 tolerated(0.43) benign(0.082) TCGA-75-7027-01 11 123886668 123886668 C A OR10G4 Silent p.L129L 0.16 TCGA-75-7027-01 11 123908791 123908791 T C OR10G7 Silent p.V306V 0.44 TCGA-75-7027-01 11 14063147 14063147 G C SPON1 RNA 0.42 TCGA-75-7027-01 11 14063148 14063148 G C SPON1 RNA 0.43 TCGA-75-7027-01 11 15134022 15134022 C A INSC Silent p.R3R 0.44 TCGA-75-7027-01 11 1642979 1642979 C A KRTAP5-4 Silent p.G115G 0.38 TCGA-75-7027-01 11 4790612 4790612 G A OR51F1 Missense_Mutation p.S179F 0.38 deleterious(0) probably_damaging(0.979) TCGA-75-7027-01 11 55136137 55136137 G T OR4A15 Missense_Mutation p.G260W 0.47 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-75-7027-01 11 57996156 57996156 A G OR10Q1 Silent p.Y64Y 0.21 TCGA-75-7027-01 11 62292534 62292534 C T AHNAK Missense_Mutation p.D3119N 0.08 possibly_damaging(0.709) TCGA-75-7027-01 11 63449190 63449190 G T RTN3 Missense_Mutation p.G28C 0.50 deleterious_low_confidence(0) unknown(0) TCGA-75-7027-01 11 6790080 6790080 A T OR2AG2 Missense_Mutation p.L37M 0.42 tolerated(0.36) benign(0.399) TCGA-75-7027-01 11 75438556 75438556 G T MOGAT2 Missense_Mutation p.G116V 0.27 deleterious(0) probably_damaging(0.997) TCGA-75-7027-01 11 7661015 7661020 CAGGAG - PPFIBP2 In_Frame_Del p.G431_A432del 0.26 TCGA-75-7027-01 11 92715486 92715486 C A MTNR1B 3'UTR 0.19 TCGA-75-7027-01 12 100904815 100904815 C A NR1H4 Silent p.R123R 0.30 TCGA-75-7027-01 12 104133198 104133198 T C STAB2 Silent p.C1902C 0.12 TCGA-75-7027-01 12 109577847 109577847 C T ACACB Missense_Mutation p.R213C 0.33 tolerated_low_confidence(0.08) benign(0.001) TCGA-75-7027-01 12 121701685 121701685 C A CAMKK2 Missense_Mutation p.G228V 0.40 deleterious(0.01) benign(0.18) TCGA-75-7027-01 12 122396894 122396894 T C WDR66 Missense_Mutation p.L676P 0.33 deleterious(0) probably_damaging(0.977) TCGA-75-7027-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.40 deleterious(0) possibly_damaging(0.479) TCGA-75-7027-01 12 29423357 29423357 G A FAR2 5'UTR 0.30 TCGA-75-7027-01 12 2975569 2975569 T A FOXM1 Missense_Mutation p.Q322L 0.46 deleterious(0) possibly_damaging(0.71) TCGA-75-7027-01 12 49445287 49445287 G A KMT2D Missense_Mutation p.P727S 0.34 unknown(0) TCGA-75-7027-01 12 53800380 53800380 G T SP1 Missense_Mutation p.A563S 0.37 tolerated(0.75) benign(0) TCGA-75-7027-01 12 55714896 55714896 T A OR6C1 Silent p.I171I 0.27 TCGA-75-7027-01 12 70956688 70956688 G T PTPRB Nonsense_Mutation p.Y1368* 0.33 TCGA-75-7027-01 12 78225190 78225190 C A NAV3 5'UTR 0.33 TCGA-75-7027-01 12 85279240 85279240 G T SLC6A15 Missense_Mutation p.P183H 0.38 deleterious(0) probably_damaging(1) TCGA-75-7027-01 12 85449548 85449549 - A LRRIQ1 Frame_Shift_Ins p.I328Nfs*38 0.20 TCGA-75-7027-01 12 86373526 86373526 C A MGAT4C Missense_Mutation p.K326N 0.31 deleterious(0) probably_damaging(0.998) TCGA-75-7027-01 13 100953772 100953772 G C PCCA Missense_Mutation p.R375P 0.18 deleterious(0) probably_damaging(0.963) TCGA-75-7027-01 13 102105181 102105181 C A ITGBL1 5'UTR 0.71 TCGA-75-7027-01 13 20283715 20283715 C A PSPC1 Missense_Mutation p.D395Y 0.66 tolerated(0.23) benign(0.075) TCGA-75-7027-01 13 38266181 38266181 G T TRPC4 Missense_Mutation p.P397T 0.66 tolerated(0.06) probably_damaging(0.993) TCGA-75-7027-01 13 58207981 58207981 C T PCDH17 Missense_Mutation p.T434I 0.21 tolerated(0.21) benign(0.005) TCGA-75-7027-01 13 79189773 79189773 T C RNF219 Missense_Mutation p.K708R 0.18 deleterious(0) probably_damaging(0.99) TCGA-75-7027-01 14 105409967 105409967 G A AHNAK2 Missense_Mutation p.P3941S 0.62 probably_damaging(0.977) TCGA-75-7027-01 14 24546540 24546540 C A CPNE6 Silent p.R493R 0.65 TCGA-75-7027-01 14 91770243 91770243 T C CCDC88C Missense_Mutation p.K1146R 0.64 tolerated(0.66) benign(0.016) TCGA-75-7027-01 15 101013174 101013174 C - CERS3 Frame_Shift_Del p.T232Pfs*3 0.15 TCGA-75-7027-01 15 20489494 20489494 A C CHEK2P2 Intron 0.11 TCGA-75-7027-01 15 23444033 23444033 G A AC100757.1 5'Flank 0.06 TCGA-75-7027-01 15 25446384 25446384 C A SNORD115-19 5'Flank 0.23 TCGA-75-7027-01 15 35086900 35086900 A G ACTC1 Missense_Mutation p.V37A 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.798) TCGA-75-7027-01 15 41361779 41361779 G C INO80 Missense_Mutation p.P591A 0.43 deleterious(0.01) benign(0.116) TCGA-75-7027-01 15 43663583 43663583 G A TUBGCP4 Missense_Mutation p.G11R 0.35 deleterious(0) probably_damaging(1) TCGA-75-7027-01 15 50152668 50152668 C A ATP8B4 Missense_Mutation p.R1101L 0.18 tolerated(0.1) benign(0.041) TCGA-75-7027-01 15 50152670 50152670 G A ATP8B4 Silent p.I1100I 0.18 TCGA-75-7027-01 15 65677380 65677380 G T IGDCC4 Missense_Mutation p.P1085H 0.24 deleterious(0.01) possibly_damaging(0.664) TCGA-75-7027-01 15 85401453 85401453 G C ALPK3 Missense_Mutation p.G1364R 0.37 deleterious(0) probably_damaging(1) TCGA-75-7027-01 15 89744335 89744335 G C ABHD2 3'UTR 0.08 TCGA-75-7027-01 15 91341491 91341491 A G BLM Silent p.S1094S 0.44 TCGA-75-7027-01 16 1395019 1395019 C T BAIAP3 Missense_Mutation p.T655I 0.43 deleterious(0.01) benign(0.421) TCGA-75-7027-01 16 22262545 22262545 G T EEF2K Nonsense_Mutation p.E174* 0.16 TCGA-75-7027-01 16 23632700 23632700 C A PALB2 Missense_Mutation p.M1032I 0.16 deleterious(0.02) benign(0.083) TCGA-75-7027-01 16 31087950 31087950 G T ZNF646 Missense_Mutation p.R102L 0.25 tolerated(0.07) benign(0.269) TCGA-75-7027-01 16 32891042 32891042 C A SLC6A10P Splice_Site 0.46 TCGA-75-7027-01 16 3349590 3349590 T C TIGD7 Missense_Mutation p.Y342C 0.24 deleterious(0) probably_damaging(0.999) TCGA-75-7027-01 16 4494686 4494686 T A DNAJA3 Missense_Mutation p.V318E 0.18 deleterious(0) probably_damaging(0.918) TCGA-75-7027-01 16 55903558 55903558 G T CES5A Silent p.V201V 0.46 TCGA-75-7027-01 16 57111271 57111271 G T NLRC5 Silent p.L1633L 0.36 TCGA-75-7027-01 16 57397565 57397565 C - CCL22 3'UTR 0.42 TCGA-75-7027-01 16 68024723 68024723 C A DPEP2 Splice_Site p.X303_splice 0.48 TCGA-75-7027-01 16 75513122 75513122 C A CHST6 Missense_Mutation p.R202L 0.43 deleterious(0) probably_damaging(1) TCGA-75-7027-01 17 20319893 20319893 G C SRP68P3 RNA 0.38 TCGA-75-7027-01 17 26114788 26114788 C G NOS2 Missense_Mutation p.G128A 0.47 tolerated(0.48) benign(0.211) TCGA-75-7027-01 17 3323978 3323978 C T OR3A3 Silent p.L39L 0.16 TCGA-75-7027-01 17 37368518 37368518 G C STAC2 3'UTR 0.31 TCGA-75-7027-01 17 39578346 39578346 A T KRT37 Missense_Mutation p.V332E 0.20 deleterious(0) probably_damaging(0.977) TCGA-75-7027-01 17 39580632 39580632 G T KRT37 Missense_Mutation p.N48K 0.27 tolerated(0.25) benign(0.097) TCGA-75-7027-01 17 41905182 41905182 C - MPP3 Frame_Shift_Del p.D154Tfs*33 0.19 TCGA-75-7027-01 17 46629913 46629913 G C HOXB3 5'UTR 0.50 TCGA-75-7027-01 17 47299962 47299962 T A ABI3 Missense_Mutation p.F329Y 0.25 deleterious(0) benign(0.418) TCGA-75-7027-01 17 48625060 48625060 C T SPATA20 Intron 0.56 TCGA-75-7027-01 17 61885106 61885106 G T DDX42 Missense_Mutation p.G290V 0.42 deleterious(0) probably_damaging(1) TCGA-75-7027-01 17 6337349 6337349 C A AIPL1 Missense_Mutation p.G56C 0.11 deleterious(0) probably_damaging(0.992) TCGA-75-7027-01 17 71027788 71027788 C A SLC39A11 Silent p.G71G 0.46 TCGA-75-7027-01 17 72348161 72348161 G C AC103809.2 Missense_Mutation p.C37W 0.38 possibly_damaging(0.833) TCGA-75-7027-01 17 73055632 73055632 C T KCTD2 Silent p.L190L 0.20 TCGA-75-7027-01 17 7406556 7406556 G C POLR2A Missense_Mutation p.R958P 0.26 possibly_damaging(0.579) TCGA-75-7027-01 17 74902107 74902107 T C MGAT5B Missense_Mutation p.V299A 0.32 deleterious(0) possibly_damaging(0.492) TCGA-75-7027-01 17 79225400 79225400 G A SLC38A10 Missense_Mutation p.P653L 0.18 tolerated(0.29) benign(0.006) TCGA-75-7027-01 17 80361813 80361813 C A OGFOD3 Missense_Mutation p.K233N 0.42 deleterious(0) probably_damaging(0.996) TCGA-75-7027-01 18 13737009 13737009 G T RNMT Missense_Mutation p.G185V 0.32 deleterious(0.03) probably_damaging(0.931) TCGA-75-7027-01 18 21747356 21747356 T C OSBPL1A Silent p.V824V 0.32 TCGA-75-7027-01 18 7231504 7231504 T A LRRC30 Missense_Mutation p.F123Y 0.29 tolerated(0.22) probably_damaging(0.995) TCGA-75-7027-01 18 76757146 76757146 G T SALL3 Missense_Mutation p.V1243L 0.24 tolerated(0.5) possibly_damaging(0.754) TCGA-75-7027-01 18 77102279 77102289 AACAGGCGATA - ATP9B Frame_Shift_Del p.G767Rfs*15 0.17 TCGA-75-7027-01 19 10602620 10602620 G A KEAP1 Missense_Mutation p.R320W 0.59 deleterious(0) probably_damaging(0.981) TCGA-75-7027-01 19 18001744 18001744 C A SLC5A5 Silent p.L567L 0.68 TCGA-75-7027-01 19 23836246 23836246 T C ZNF675 Missense_Mutation p.T497A 0.55 tolerated(0.28) benign(0.011) TCGA-75-7027-01 19 36259553 36259553 C G C19orf55 3'UTR 0.16 TCGA-75-7027-01 19 38202555 38202555 G A ZNF607 5'UTR 0.23 TCGA-75-7027-01 19 43519364 43519364 G T PSG11 Missense_Mutation p.Q290K 0.21 tolerated(0.08) benign(0.216) TCGA-75-7027-01 19 43579759 43579759 G A PSG2 Silent p.S152S 0.20 TCGA-75-7027-01 19 49183484 49183484 G A RN7SL345P 5'Flank 0.40 TCGA-75-7027-01 19 51361318 51361318 G T KLK3 Silent p.L80L 0.26 TCGA-75-7027-01 19 5225821 5225821 G C PTPRS Missense_Mutation p.A804G 0.43 tolerated(0.09) possibly_damaging(0.522) TCGA-75-7027-01 19 54848199 54848199 C G LILRA4 Missense_Mutation p.A390P 0.30 deleterious(0.01) probably_damaging(0.948) TCGA-75-7027-01 19 55693405 55693405 C A PTPRH Silent p.R1059R 0.43 TCGA-75-7027-01 19 55693406 55693406 C A PTPRH Missense_Mutation p.R1059L 0.42 probably_damaging(0.995) TCGA-75-7027-01 19 56300690 56300690 C A NLRP11 Missense_Mutation p.R863S 0.45 deleterious(0.01) benign(0.162) TCGA-75-7027-01 19 56572869 56572869 A G NLRP5 Missense_Mutation p.D1193G 0.19 deleterious(0.01) possibly_damaging(0.894) TCGA-75-7027-01 19 57640042 57640042 G C USP29 5'UTR 0.12 TCGA-75-7027-01 19 57640043 57640043 G T USP29 5'UTR 0.12 TCGA-75-7027-01 19 59010492 59010492 G T SLC27A5 Missense_Mutation p.P588Q 0.43 deleterious(0.01) probably_damaging(1) TCGA-75-7027-01 1 100928316 100928316 C T CDC14A Silent p.D239D 0.28 TCGA-75-7027-01 1 10421830 10421830 A T KIF1B Silent p.P1371P 0.58 TCGA-75-7027-01 1 109867652 109867652 T C SORT1 Missense_Mutation p.Y568C 0.58 deleterious(0.04) probably_damaging(0.913) TCGA-75-7027-01 1 152280380 152280380 C T FLG Missense_Mutation p.E2328K 0.43 possibly_damaging(0.621) TCGA-75-7027-01 1 156532985 156532985 C T IQGAP3 Missense_Mutation p.V247I 0.14 tolerated(0.21) benign(0.001) TCGA-75-7027-01 1 156639506 156639506 T A NES Missense_Mutation p.S1492C 0.29 deleterious(0) probably_damaging(0.999) TCGA-75-7027-01 1 167830185 167830185 G A ADCY10 Missense_Mutation p.T578I 0.12 tolerated(0.19) benign(0.022) TCGA-75-7027-01 1 169698396 169698396 A T SELE Missense_Mutation p.L341M 0.42 deleterious(0.01) probably_damaging(0.927) TCGA-75-7027-01 1 173493964 173493964 C A SLC9C2 Missense_Mutation p.C823F 0.22 tolerated(0.2) benign(0.035) TCGA-75-7027-01 1 192985498 192985498 C A UCHL5 Missense_Mutation p.A325S 0.24 tolerated(0.61) unknown(0) TCGA-75-7027-01 1 196971705 196971705 C T CFHR5 Missense_Mutation p.A414V 0.46 deleterious(0.02) benign(0.298) TCGA-75-7027-01 1 200012997 200012997 C A NR5A2 Missense_Mutation p.L100I 0.34 tolerated(0.08) benign(0.241) TCGA-75-7027-01 1 211486235 211486235 A G RCOR3 Missense_Mutation p.T417A 0.34 tolerated(0.72) benign(0.001) TCGA-75-7027-01 1 216166400 216166400 G T USH2A Missense_Mutation p.S2256Y 0.46 probably_damaging(0.976) TCGA-75-7027-01 1 216497666 216497666 C A USH2A Missense_Mutation p.S391I 0.17 probably_damaging(0.998) TCGA-75-7027-01 1 227838768 227838768 G T ZNF678 Missense_Mutation p.V26F 0.32 tolerated_low_confidence(0.1) benign(0.001) TCGA-75-7027-01 1 228582544 228582544 C A TRIM11 Silent p.G423G 0.44 TCGA-75-7027-01 1 228602468 228602468 G T TRIM17 Missense_Mutation p.H102Q 0.42 deleterious(0) probably_damaging(0.999) TCGA-75-7027-01 1 247836209 247836209 G A OR13G1 Silent p.A45A 0.44 TCGA-75-7027-01 1 248058880 248058880 G T OR2W3 5'UTR 0.36 TCGA-75-7027-01 1 248790195 248790195 G A OR2T11 Silent p.L79L 0.57 TCGA-75-7027-01 1 28206516 28206516 G A THEMIS2 Nonsense_Mutation p.W199* 0.09 TCGA-75-7027-01 1 36469988 36469988 G T AGO3 Missense_Mutation p.M235I 0.62 tolerated(0.14) benign(0.03) TCGA-75-7027-01 1 38019710 38019710 G A SNIP1 Missense_Mutation p.P41S 0.33 tolerated_low_confidence(0.17) benign(0.054) TCGA-75-7027-01 1 45294203 45294203 G A PTCH2 Missense_Mutation p.P522L 0.66 deleterious(0) probably_damaging(1) TCGA-75-7027-01 1 70518799 70518799 G A LRRC7 Missense_Mutation p.D1363N 0.78 deleterious(0) possibly_damaging(0.756) TCGA-75-7027-01 1 76205782 76205782 G A ACADM Missense_Mutation p.G200R 0.51 deleterious(0) probably_damaging(0.996) TCGA-75-7027-01 20 31685467 31685467 C A BPIFB4 Silent p.I481I 0.43 TCGA-75-7027-01 20 40730911 40730911 C A PTPRT Silent p.V1189V 0.17 TCGA-75-7027-01 20 40743842 40743842 C A PTPRT Missense_Mutation p.Q1032H 0.24 tolerated(0.08) probably_damaging(0.984) TCGA-75-7027-01 20 42635366 42635366 C A TOX2 Silent p.L115L 0.59 TCGA-75-7027-01 20 44839121 44839121 C A CDH22 Missense_Mutation p.D371Y 0.30 tolerated(0.18) possibly_damaging(0.781) TCGA-75-7027-01 20 44869744 44869744 C A CDH22 Silent p.R136R 0.20 TCGA-75-7027-01 20 45808534 45808535 - A EYA2 Frame_Shift_Ins p.A431Gfs*40 0.31 TCGA-75-7027-01 20 4768901 4768901 G T RASSF2 Missense_Mutation p.A218E 0.48 deleterious(0) possibly_damaging(0.635) TCGA-75-7027-01 20 57768321 57768321 C A ZNF831 Silent p.V749V 0.57 TCGA-75-7027-01 20 57768439 57768439 G T ZNF831 Missense_Mutation p.A789S 0.58 tolerated(0.85) benign(0.004) TCGA-75-7027-01 20 60985978 60985978 C A RBBP8NL Missense_Mutation p.D651Y 0.46 deleterious(0) possibly_damaging(0.656) TCGA-75-7027-01 20 61870819 61870819 G T BIRC7 Missense_Mutation p.K253N 0.12 deleterious(0) probably_damaging(0.967) TCGA-75-7027-01 20 62839775 62839775 G T MYT1 Missense_Mutation p.G409V 0.50 benign(0.206) TCGA-75-7027-01 20 62904813 62904813 G C PCMTD2 Missense_Mutation p.E316Q 0.48 tolerated(0.15) benign(0.147) TCGA-75-7027-01 21 32526706 32526706 A C TIAM1 Missense_Mutation p.H1010Q 0.55 tolerated(0.17) benign(0.007) TCGA-75-7027-01 21 44192569 44192569 C T PDE9A Silent p.S569S 0.69 TCGA-75-7027-01 21 45544482 45544482 C T PWP2 Silent p.Y613Y 0.29 TCGA-75-7027-01 22 23101412 23101412 C A IGLV2-14 Silent p.A22A 0.56 TCGA-75-7027-01 22 26736548 26736548 C A SEZ6L Missense_Mutation p.P721H 0.60 deleterious(0) probably_damaging(0.994) TCGA-75-7027-01 22 32914053 32914053 T A SYN3 Silent p.P529P 0.57 TCGA-75-7027-01 22 44333104 44333104 C T PNPLA3 Missense_Mutation p.P311S 0.18 tolerated(0.09) benign(0.245) TCGA-75-7027-01 22 45312349 45312349 C T PHF21B Silent p.A125A 0.26 TCGA-75-7027-01 2 108487939 108487939 T G RGPD4 Missense_Mutation p.F1160C 0.06 deleterious(0) probably_damaging(0.999) TCGA-75-7027-01 2 113674730 113674730 C A IL37 Missense_Mutation p.P57Q 0.33 tolerated(0.07) probably_damaging(0.91) TCGA-75-7027-01 2 119600786 119600786 C G EN1 Missense_Mutation p.D303H 0.29 deleterious(0) possibly_damaging(0.453) TCGA-75-7027-01 2 132914697 132914697 G T ANKRD30BL Missense_Mutation p.A119D 0.17 tolerated(0.3) possibly_damaging(0.707) TCGA-75-7027-01 2 133540303 133540303 G C NCKAP5 Missense_Mutation p.Q1361E 0.31 deleterious(0.01) benign(0.442) TCGA-75-7027-01 2 152470916 152470916 C A NEB Silent p.V3825V 0.45 TCGA-75-7027-01 2 155555270 155555270 G T KCNJ3 5'UTR 0.27 TCGA-75-7027-01 2 165970341 165970341 G T SCN3A Silent p.L1218L 0.12 TCGA-75-7027-01 2 165987787 165987787 C A SCN3A Silent p.V844V 0.26 TCGA-75-7027-01 2 175677163 175677163 C T CHN1 Missense_Mutation p.D254N 0.55 deleterious(0.04) benign(0.402) TCGA-75-7027-01 2 189916924 189916924 C A COL5A2 Missense_Mutation p.G915C 0.37 unknown(0) TCGA-75-7027-01 2 1914022 1914022 G T MYT1L Missense_Mutation p.R601S 0.37 deleterious(0) probably_damaging(0.954) TCGA-75-7027-01 2 198646503 198646503 G A BOLL Silent p.A36A 0.28 TCGA-75-7027-01 2 211456679 211456679 G A CPS1 Missense_Mutation p.D364N 0.42 deleterious(0) probably_damaging(1) TCGA-75-7027-01 2 215807686 215807686 A T ABCA12 Missense_Mutation p.F2467I 0.35 deleterious(0) probably_damaging(0.999) TCGA-75-7027-01 2 218713528 218713528 C A TNS1 Missense_Mutation p.G446V 0.42 deleterious(0) probably_damaging(1) TCGA-75-7027-01 2 219605285 219605285 G A TTLL4 Missense_Mutation p.E547K 0.11 tolerated(0.42) benign(0.007) TCGA-75-7027-01 2 220431754 220431754 C A OBSL1 Missense_Mutation p.Q644H 0.41 tolerated(0.22) benign(0.066) TCGA-75-7027-01 2 226446863 226446863 G A NYAP2 Missense_Mutation p.V244M 0.04 deleterious(0) probably_damaging(0.999) TCGA-75-7027-01 2 242144277 242144277 C A ANO7 Intron 0.44 TCGA-75-7027-01 2 51255149 51255149 C A NRXN1 Missense_Mutation p.R88L 0.29 tolerated(0.07) possibly_damaging(0.628) TCGA-75-7027-01 2 65301307 65301307 C A CEP68 Intron 0.23 TCGA-75-7027-01 2 65540928 65540928 G - SPRED2 Frame_Shift_Del p.R322Afs*12 0.23 TCGA-75-7027-01 2 80529332 80529332 C A LRRTM1 3'UTR 0.34 TCGA-75-7027-01 2 84668224 84668224 C A SUCLG1 Missense_Mutation p.G179V 0.25 deleterious(0) possibly_damaging(0.706) TCGA-75-7027-01 2 85578057 85578057 G A RETSAT Missense_Mutation p.P148L 0.44 tolerated(0.07) benign(0.003) TCGA-75-7027-01 3 108541679 108541679 C T TRAT1 5'UTR 0.43 TCGA-75-7027-01 3 128200788 128200788 C A GATA2 Splice_Site p.X340_splice 0.67 TCGA-75-7027-01 3 13415250 13415250 C A NUP210 Missense_Mutation p.V519L 0.64 tolerated(0.16) benign(0.005) TCGA-75-7027-01 3 151164418 151164418 G A IGSF10 Silent p.P1117P 0.59 TCGA-75-7027-01 3 19190118 19190118 G T KCNH8 5'UTR 0.76 TCGA-75-7027-01 3 41996204 41996204 A T ULK4 Silent p.T16T 0.59 TCGA-75-7027-01 3 4459759 4459759 C A SUMF1 Missense_Mutation p.W220C 0.61 deleterious(0) probably_damaging(0.983) TCGA-75-7027-01 3 49412905 49412905 C A RHOA Nonsense_Mutation p.E40* 0.56 TCGA-75-7027-01 3 57130439 57130439 G A IL17RD Silent p.H734H 0.63 TCGA-75-7027-01 3 97506897 97506897 T G ARL6 Missense_Mutation p.V138G 0.39 deleterious(0) possibly_damaging(0.604) TCGA-75-7027-01 4 10527500 10527500 G T CLNK Missense_Mutation p.N232K 0.93 tolerated(0.12) benign(0.046) TCGA-75-7027-01 4 115769409 115769409 C A NDST4 Missense_Mutation p.Q634H 0.36 deleterious(0) probably_damaging(0.995) TCGA-75-7027-01 4 123094284 123094284 A G KIAA1109 Missense_Mutation p.Y64C 0.37 possibly_damaging(0.599) TCGA-75-7027-01 4 13543927 13543927 A T NKX3-2 Missense_Mutation p.L231Q 0.33 deleterious(0) probably_damaging(1) TCGA-75-7027-01 4 159790038 159790038 G C FNIP2 Missense_Mutation p.E750D 0.31 tolerated(0.38) benign(0.062) TCGA-75-7027-01 4 170994431 170994431 G A AADAT Silent p.S170S 0.28 TCGA-75-7027-01 4 187173004 187173004 G A KLKB1 Missense_Mutation p.G378E 0.32 tolerated(0.73) benign(0.014) TCGA-75-7027-01 4 189060808 189060808 G T TRIML1 Silent p.G32G 0.25 TCGA-75-7027-01 4 2661397 2661397 G T FAM193A Missense_Mutation p.R210I 0.13 deleterious(0) probably_damaging(0.988) TCGA-75-7027-01 4 36148964 36148964 G A ARAP2 Nonsense_Mutation p.Q1073* 0.64 TCGA-75-7027-01 4 40122701 40122701 A G N4BP2 Silent p.V990V 0.19 TCGA-75-7027-01 4 52861367 52861367 C A LRRC66 Silent p.G607G 0.16 TCGA-75-7027-01 4 56336970 56336970 G C CLOCK Missense_Mutation p.L118V 0.28 deleterious(0) probably_damaging(0.988) TCGA-75-7027-01 4 57182639 57182639 C T KIAA1211 Missense_Mutation p.R991C 0.24 deleterious(0) possibly_damaging(0.835) TCGA-75-7027-01 4 69199072 69199073 - G YTHDC1 Frame_Shift_Ins p.I310Nfs*4 0.23 TCGA-75-7027-01 4 69962246 69962246 T C UGT2B7 Missense_Mutation p.V3A 0.32 tolerated(0.28) benign(0.025) TCGA-75-7027-01 4 70596345 70596345 C A SULT1B1 Missense_Mutation p.D218Y 0.20 deleterious(0) possibly_damaging(0.579) TCGA-75-7027-01 4 74357672 74357672 G A AFM Silent p.E309E 0.32 TCGA-75-7027-01 4 77675506 77675506 G T SHROOM3 Silent p.P1290P 0.26 TCGA-75-7027-01 4 81123121 81123121 C T PRDM8 Missense_Mutation p.P169S 0.29 tolerated(0.1) probably_damaging(0.968) TCGA-75-7027-01 4 88535365 88535365 C G DSPP Missense_Mutation p.S517R 0.27 unknown(0) TCGA-75-7027-01 4 88767088 88767088 C A MEPE Missense_Mutation p.N356K 0.30 deleterious(0) possibly_damaging(0.835) TCGA-75-7027-01 4 91549341 91549341 A T CCSER1 Silent p.A630A 0.38 TCGA-75-7027-01 5 11384809 11384809 G A CTNND2 Missense_Mutation p.T382M 0.35 deleterious(0.04) possibly_damaging(0.715) TCGA-75-7027-01 5 118469357 118469357 G T DMXL1 Missense_Mutation p.G580C 0.25 deleterious(0.03) possibly_damaging(0.759) TCGA-75-7027-01 5 131705782 131705782 G C SLC22A5 Missense_Mutation p.V40L 0.89 deleterious(0) benign(0.272) TCGA-75-7027-01 5 137802542 137802542 G T EGR1 Missense_Mutation p.G135V 0.63 deleterious(0) probably_damaging(0.988) TCGA-75-7027-01 5 140222535 140222535 G T PCDHA8 Silent p.P543P 0.72 TCGA-75-7027-01 5 140603356 140603356 C A PCDHB14 Missense_Mutation p.D93E 0.56 tolerated_low_confidence(1) benign(0.002) TCGA-75-7027-01 5 140731926 140731926 T A PCDHGB1 Missense_Mutation p.L700H 0.62 deleterious(0) probably_damaging(0.959) TCGA-75-7027-01 5 140869611 140869611 T A PCDHGC5 Missense_Mutation p.D268E 0.67 deleterious(0) probably_damaging(0.998) TCGA-75-7027-01 5 150138543 150138543 G A DCTN4 Silent p.L5L 0.58 TCGA-75-7027-01 5 156390260 156390260 C A TIMD4 5'UTR 0.66 TCGA-75-7027-01 5 156589539 156589539 A G FAM71B Silent p.G579G 0.58 TCGA-75-7027-01 5 26881508 26881508 T A CDH9 Missense_Mutation p.T703S 0.50 tolerated(1) possibly_damaging(0.474) TCGA-75-7027-01 5 38337723 38337723 G T EGFLAM Missense_Mutation p.G67W 0.47 deleterious_low_confidence(0) probably_damaging(1) TCGA-75-7027-01 5 38959321 38959325 GGAAA - RICTOR Frame_Shift_Del p.L717Qfs*8 0.09 TCGA-75-7027-01 5 83402473 83402473 C A EDIL3 Missense_Mutation p.W215C 0.61 deleterious(0) probably_damaging(1) TCGA-75-7027-01 6 112455712 112455712 C T LAMA4 Missense_Mutation p.D1172N 0.23 deleterious(0.01) probably_damaging(1) TCGA-75-7027-01 6 116757507 116757507 G C DSE Missense_Mutation p.E626Q 0.27 tolerated(0.21) possibly_damaging(0.754) TCGA-75-7027-01 6 117130692 117130692 G T GPRC6A Missense_Mutation p.L95M 0.25 deleterious(0) probably_damaging(1) TCGA-75-7027-01 6 161007518 161007518 C A LPA Silent p.V1364V 0.23 TCGA-75-7027-01 6 165746481 165746481 G C PDE10A 3'UTR 0.27 TCGA-75-7027-01 6 165842178 165842178 C A PDE10A Missense_Mutation p.V275F 0.31 deleterious(0) probably_damaging(0.959) TCGA-75-7027-01 6 31852716 31852716 C T EHMT2 Silent p.R807R 0.25 TCGA-75-7027-01 6 32135340 32135340 C A EGFL8 Missense_Mutation p.Q248K 0.43 tolerated(0.85) benign(0.048) TCGA-75-7027-01 6 34506078 34506078 G A SPDEF Silent p.L327L 0.21 TCGA-75-7027-01 6 41621193 41621193 C A MDFI Silent p.G207G 0.24 TCGA-75-7027-01 6 46626613 46626613 G C SLC25A27 Intron 0.20 TCGA-75-7027-01 6 47681561 47681561 C A GPR115 Missense_Mutation p.L194I 0.50 deleterious(0.01) probably_damaging(0.997) TCGA-75-7027-01 6 49666177 49666177 A T CRISP2 Silent p.T105T 0.18 TCGA-75-7027-01 6 62757835 62757835 G T KHDRBS2 Missense_Mutation p.T95K 0.34 deleterious(0) probably_damaging(0.998) TCGA-75-7027-01 6 75813479 75813479 C G COL12A1 Silent p.G2771G 0.18 TCGA-75-7027-01 6 75825638 75825638 C A COL12A1 Missense_Mutation p.G2520V 0.34 benign(0.014) TCGA-75-7027-01 6 84269919 84269919 A T SNAP91 Silent p.A845A 0.29 TCGA-75-7027-01 6 87725963 87725963 G T HTR1E Missense_Mutation p.W304L 0.32 deleterious(0) probably_damaging(1) TCGA-75-7027-01 7 121758465 121758465 C A AASS Missense_Mutation p.V195L 0.46 tolerated(1) benign(0.003) TCGA-75-7027-01 7 126544704 126544704 G T GRM8 Missense_Mutation p.P254Q 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-75-7027-01 7 127670542 127670542 G T LRRC4 Nonsense_Mutation p.S51* 0.47 TCGA-75-7027-01 7 129043237 129043237 G C AHCYL2 Silent p.G312G 0.43 TCGA-75-7027-01 7 139827360 139827360 T C KDM7A Missense_Mutation p.I195V 0.24 tolerated(0.07) probably_damaging(0.989) TCGA-75-7027-01 7 142832325 142832325 C A PIP Nonsense_Mutation p.S45* 0.41 TCGA-75-7027-01 7 142832326 142832326 A G PIP Silent p.S45S 0.43 TCGA-75-7027-01 7 149502627 149502627 G T SSPO RNA 0.29 TCGA-75-7027-01 7 150269516 150269516 G T GIMAP4 Missense_Mutation p.V120L 0.22 deleterious(0) probably_damaging(1) TCGA-75-7027-01 7 150720252 150720252 C A ATG9B Missense_Mutation p.R234L 0.30 tolerated(0.62) possibly_damaging(0.464) TCGA-75-7027-01 7 158715218 158715218 A C WDR60 Missense_Mutation p.K691T 0.22 deleterious(0) possibly_damaging(0.727) TCGA-75-7027-01 7 48390325 48390325 C A ABCA13 Nonsense_Mutation p.C3430* 0.44 TCGA-75-7027-01 7 73456964 73456964 G T ELN Missense_Mutation p.V85F 0.39 unknown(0) TCGA-75-7027-01 7 73969507 73969507 C T GTF2IRD1 Silent p.P672P 0.09 TCGA-75-7027-01 7 98254413 98254413 C A NPTX2 Missense_Mutation p.Q275K 0.18 deleterious(0.03) probably_damaging(1) TCGA-75-7027-01 8 10587948 10587948 G A SOX7 5'UTR 0.40 TCGA-75-7027-01 8 113293408 113293408 C G CSMD3 Missense_Mutation p.C3168S 0.27 deleterious(0) benign(0.232) TCGA-75-7027-01 8 113668416 113668416 G C CSMD3 Missense_Mutation p.R991G 0.26 deleterious(0.01) probably_damaging(1) TCGA-75-7027-01 8 135614646 135614646 T A ZFAT Missense_Mutation p.H439L 0.18 deleterious(0) probably_damaging(0.997) TCGA-75-7027-01 8 144687961 144687961 A T PYCRL Missense_Mutation p.L257H 0.15 deleterious(0) probably_damaging(0.999) TCGA-75-7027-01 8 144808765 144808765 T A FAM83H Missense_Mutation p.S956C 0.33 deleterious(0.01) benign(0.155) TCGA-75-7027-01 8 145597779 145597779 T G ADCK5 5'UTR 0.43 TCGA-75-7027-01 8 145622562 145622562 G T CPSF1 Missense_Mutation p.L818I 0.40 tolerated(0.09) possibly_damaging(0.831) TCGA-75-7027-01 8 20110358 20110358 T A LZTS1 Nonsense_Mutation p.K362* 0.26 TCGA-75-7027-01 8 27466544 27466544 C A CLU Missense_Mutation p.V53L 0.31 deleterious(0.03) possibly_damaging(0.462) TCGA-75-7027-01 8 38845496 38845496 G A HTRA4 Missense_Mutation p.G437E 0.33 deleterious(0.03) probably_damaging(0.981) TCGA-75-7027-01 8 49987937 49987937 G T C8orf22 3'UTR 0.43 TCGA-75-7027-01 8 51465741 51465741 T A SNTG1 Splice_Site p.X270_splice 0.40 TCGA-75-7027-01 8 52359687 52359687 G A PXDNL Missense_Mutation p.L468F 0.12 deleterious(0.04) probably_damaging(0.995) TCGA-75-7027-01 8 55537428 55537428 G T RP1 Missense_Mutation p.G329V 0.22 deleterious(0) probably_damaging(1) TCGA-75-7027-01 8 75924705 75924705 G T CRISPLD1 Missense_Mutation p.W99L 0.37 deleterious(0) probably_damaging(0.999) TCGA-75-7027-01 8 75924706 75924706 G T CRISPLD1 Missense_Mutation p.W99C 0.38 deleterious(0) probably_damaging(1) TCGA-75-7027-01 8 77775684 77775684 C A ZFHX4 Missense_Mutation p.A3245E 0.35 probably_damaging(0.994) TCGA-75-7027-01 8 81399761 81399761 C A ZBTB10 Missense_Mutation p.P239H 0.47 deleterious_low_confidence(0) possibly_damaging(0.56) TCGA-75-7027-01 8 86249258 86249258 C G CA1 Missense_Mutation p.R90S 0.39 deleterious(0) probably_damaging(0.952) TCGA-75-7027-01 8 93003958 93003958 G T RUNX1T1 Nonsense_Mutation p.Y311* 0.37 TCGA-75-7027-01 8 95897326 95897326 T A CCNE2 Missense_Mutation p.Y267F 0.22 tolerated(0.27) benign(0.019) TCGA-75-7027-01 8 97311923 97311923 T A PTDSS1 Missense_Mutation p.L201H 0.18 deleterious(0) probably_damaging(1) TCGA-75-7027-01 8 97311924 97311924 C A PTDSS1 Silent p.L201L 0.19 TCGA-75-7027-01 8 97797326 97797326 G A CPQ Silent p.L67L 0.34 TCGA-75-7027-01 8 97797327 97797327 G A CPQ Missense_Mutation p.A68T 0.33 tolerated(0.07) benign(0.098) TCGA-75-7027-01 9 107331760 107331760 T A OR13C8 Silent p.S104S 0.62 TCGA-75-7027-01 9 13192152 13192152 C G MPDZ Missense_Mutation p.C649S 0.47 tolerated(0.83) benign(0.001) TCGA-75-7027-01 9 16727855 16727855 T A BNC2 Silent p.P90P 0.26 TCGA-75-7027-01 9 35095491 35095491 G A PIGO Silent p.F24F 0.41 TCGA-75-7027-01 9 7174799 7174799 G T KDM4C 3'UTR 0.53 TCGA-75-7027-01 9 95284981 95284981 C T ECM2 Silent p.Q56Q 0.48 TCGA-75-7027-01 X 107400068 107400068 G C COL4A6 3'UTR 0.79 TCGA-75-7027-01 X 150349641 150349641 C A GPR50 Missense_Mutation p.P529H 0.76 deleterious_low_confidence(0) benign(0.436) TCGA-75-7027-01 X 152915633 152915633 G C DUSP9 Missense_Mutation p.S343T 0.77 tolerated(1) benign(0.019) TCGA-75-7027-01 X 34148697 34148697 G T FAM47A Missense_Mutation p.H567N 0.80 tolerated(0.06) possibly_damaging(0.888) TCGA-75-7027-01 X 77913138 77913138 A G ZCCHC5 Silent p.S260S 0.18 TCGA-75-7027-01 X 83128348 83128348 C A CYLC1 Missense_Mutation p.T211N 0.68 tolerated(0.38) possibly_damaging(0.607) TCGA-75-7030-01 11 92613995 92613995 G A FAT3 Missense_Mutation p.D4076N 0.07 benign(0.016) TCGA-75-7030-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.12 deleterious(0) benign(0.361) TCGA-75-7030-01 12 52164405 52164405 G A SCN8A Missense_Mutation p.V1195M 0.07 deleterious(0) probably_damaging(0.999) TCGA-75-7030-01 12 9262615 9262615 C T A2M Missense_Mutation p.R174H 0.07 deleterious(0.01) possibly_damaging(0.534) TCGA-75-7030-01 16 25258179 25258179 T C ZKSCAN2 Silent p.R446R 0.04 TCGA-75-7030-01 17 4535037 4535037 C T ALOX15 Missense_Mutation p.G616D 0.03 tolerated(0.95) benign(0.106) TCGA-75-7030-01 19 56539197 56539197 G A NLRP5 Missense_Mutation p.R533H 0.15 tolerated(0.15) benign(0.086) TCGA-75-7030-01 1 160147371 160147371 A C ATP1A4 Silent p.R885R 0.04 TCGA-75-7030-01 1 240072343 240072343 G T CHRM3 Missense_Mutation p.W531L 0.07 deleterious(0) probably_damaging(0.998) TCGA-75-7030-01 1 93306107 93306107 G T RPL5 Splice_Site p.X236_splice 0.05 TCGA-75-7030-01 2 233244593 233244593 C T ALPP Nonsense_Mutation p.Q202* 0.06 TCGA-75-7030-01 2 90249265 90249265 C A IGKV1D-43 Missense_Mutation p.S74Y 0.05 deleterious(0) benign(0.222) TCGA-75-7030-01 3 48453984 48453984 G A PLXNB1 Missense_Mutation p.R1634C 0.09 deleterious(0) probably_damaging(1) TCGA-75-7030-01 4 100761541 100761541 A G DAPP1 Missense_Mutation p.K107R 0.10 tolerated(0.24) benign(0.167) TCGA-75-7030-01 4 70355193 70355193 A G UGT2B4 Silent p.N322N 0.04 TCGA-75-7030-01 5 43139296 43139296 A C ZNF131 Missense_Mutation p.I86L 0.04 tolerated(0.86) benign(0.151) TCGA-75-7030-01 6 86329003 86329003 G C SYNCRIP Missense_Mutation p.R381G 0.09 deleterious(0) probably_damaging(0.989) TCGA-75-7030-01 8 134034380 134034380 G A TG Missense_Mutation p.G2341S 0.06 deleterious(0) probably_damaging(1) TCGA-75-7031-01 10 26446298 26446298 C T MYO3A Silent p.C951C 0.31 TCGA-75-7031-01 10 44871481 44871481 C T CXCL12 3'Flank 0.15 TCGA-75-7031-01 10 50708677 50708677 C G ERCC6 Missense_Mutation p.G531A 0.34 deleterious(0.03) possibly_damaging(0.889) TCGA-75-7031-01 10 75037043 75037043 G T TTC18 Silent p.I895I 0.45 TCGA-75-7031-01 10 97135812 97135812 C T SORBS1 Missense_Mutation p.S552N 0.44 deleterious_low_confidence(0.03) benign(0.437) TCGA-75-7031-01 11 10580717 10580717 G T LYVE1 Missense_Mutation p.P304T 0.28 tolerated(0.34) benign(0.007) TCGA-75-7031-01 11 36595915 36595915 T A RAG1 Missense_Mutation p.L354Q 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-75-7031-01 11 45204512 45204512 G A PRDM11 Silent p.R108R 0.06 TCGA-75-7031-01 11 55861088 55861088 A G OR8I2 Missense_Mutation p.Y102C 0.31 tolerated(0.08) benign(0.025) TCGA-75-7031-01 11 57886277 57886277 T G OR9I1 Missense_Mutation p.I214L 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-75-7031-01 11 60183801 60183801 C - MS4A14 Frame_Shift_Del p.Q487Kfs*35 0.26 TCGA-75-7031-01 11 61291970 61291970 G C SYT7 Silent p.L294L 0.14 TCGA-75-7031-01 11 61547315 61547315 C T MYRF Missense_Mutation p.S750L 0.10 tolerated(0.05) benign(0.06) TCGA-75-7031-01 11 62301375 62301375 C T AHNAK Missense_Mutation p.D172N 0.27 probably_damaging(0.911) TCGA-75-7031-01 11 64875837 64875837 C T VPS51 Silent p.P298P 0.15 TCGA-75-7031-01 11 65319748 65319748 C T LTBP3 Missense_Mutation p.R439Q 0.17 tolerated(0.24) possibly_damaging(0.476) TCGA-75-7031-01 11 6648021 6648021 T G DCHS1 Silent p.P2083P 0.34 TCGA-75-7031-01 11 68305257 68305257 G T PPP6R3 Missense_Mutation p.R42L 0.34 deleterious(0) benign(0.009) TCGA-75-7031-01 11 69950160 69950160 A T ANO1 Missense_Mutation p.Q199L 0.18 tolerated(0.09) benign(0.15) TCGA-75-7031-01 12 104054517 104054517 C A STAB2 Silent p.L615L 0.25 TCGA-75-7031-01 12 119968728 119968728 C A CCDC60 Missense_Mutation p.P471T 0.41 tolerated(0.39) probably_damaging(1) TCGA-75-7031-01 12 129569124 129569124 G T TMEM132D Silent p.R523R 0.30 TCGA-75-7031-01 12 133372559 133372559 T A GOLGA3 Missense_Mutation p.Q783L 0.11 deleterious(0.01) possibly_damaging(0.877) TCGA-75-7031-01 12 18854567 18854567 C T PLCZ1 Intron 0.25 TCGA-75-7031-01 12 21713361 21713361 G T GYS2 Missense_Mutation p.N376K 0.18 tolerated(0.06) probably_damaging(1) TCGA-75-7031-01 12 283906 283906 C G IQSEC3 Missense_Mutation p.P1086A 0.22 tolerated_low_confidence(0.29) possibly_damaging(0.811) TCGA-75-7031-01 12 33529797 33529797 A T SYT10 Missense_Mutation p.C514S 0.27 deleterious(0) probably_damaging(0.977) TCGA-75-7031-01 12 52080931 52080931 G A SCN8A Missense_Mutation p.G181D 0.06 deleterious(0) probably_damaging(1) TCGA-75-7031-01 12 55863743 55863743 G A OR6C70 Silent p.F60F 0.33 TCGA-75-7031-01 12 81111289 81111289 G - MYF5 Frame_Shift_Del p.G150Dfs*61 0.18 TCGA-75-7031-01 12 95546736 95546736 G C FGD6 Missense_Mutation p.H874D 0.05 deleterious(0.01) benign(0.418) TCGA-75-7031-01 13 101881875 101881875 T C NALCN Missense_Mutation p.I499V 0.68 deleterious(0.01) probably_damaging(0.992) TCGA-75-7031-01 13 29608081 29608081 C G MTUS2 Silent p.V765V 0.26 TCGA-75-7031-01 13 52508817 52508817 C A ATP7B 3'UTR 0.39 TCGA-75-7031-01 13 61986212 61986212 C G PCDH20 Missense_Mutation p.V674L 0.34 tolerated(0.07) possibly_damaging(0.612) TCGA-75-7031-01 13 86369859 86369859 T C SLITRK6 Missense_Mutation p.K262R 0.42 tolerated(0.1) benign(0.038) TCGA-75-7031-01 14 100119151 100119151 C T HHIPL1 Silent p.I282I 0.12 TCGA-75-7031-01 14 22133530 22133530 G T OR4E2 Silent p.V78V 0.36 TCGA-75-7031-01 14 45658096 45658096 G T FANCM Missense_Mutation p.C1624F 0.30 deleterious(0.03) benign(0.041) TCGA-75-7031-01 14 70633711 70633711 C A SLC8A3 Missense_Mutation p.D477Y 0.27 deleterious(0) probably_damaging(1) TCGA-75-7031-01 14 77242295 77242295 C A VASH1 Missense_Mutation p.F197L 0.27 deleterious(0.01) benign(0.301) TCGA-75-7031-01 14 94079309 94079309 G T UNC79 Silent p.T1130T 0.19 TCGA-75-7031-01 14 94770871 94770871 G - SERPINA6 Frame_Shift_Del p.L368* 0.22 TCGA-75-7031-01 15 27017582 27017582 G A GABRB3 Silent p.I69I 0.59 TCGA-75-7031-01 15 27765254 27765254 A G GABRG3 Silent p.P283P 0.44 TCGA-75-7031-01 15 60768320 60768320 T G NARG2 Missense_Mutation p.N30H 0.12 deleterious(0.03) probably_damaging(0.944) TCGA-75-7031-01 15 62176408 62176408 C T VPS13C Silent p.Q3134Q 0.25 TCGA-75-7031-01 15 67709303 67709303 C G IQCH Missense_Mutation p.A711G 0.11 deleterious(0.02) benign(0.141) TCGA-75-7031-01 15 72144597 72144597 A G MYO9A Silent p.A2117A 0.12 TCGA-75-7031-01 15 74630957 74630958 - A CYP11A1 Frame_Shift_Ins p.R465Tfs*5 0.25 TCGA-75-7031-01 15 80263323 80263323 C A BCL2A1 Nonsense_Mutation p.E47* 0.21 TCGA-75-7031-01 16 20422953 20422953 G T ACSM5 Silent p.V49V 0.33 TCGA-75-7031-01 16 23581814 23581814 G T UBFD1 Missense_Mutation p.G278V 0.34 deleterious(0) possibly_damaging(0.652) TCGA-75-7031-01 16 55705996 55705996 T A SLC6A2 Missense_Mutation p.C185S 0.54 deleterious(0) probably_damaging(1) TCGA-75-7031-01 16 56377861 56377861 G T GNAO1 Nonstop_Mutation p.*355Lext*33 0.24 TCGA-75-7031-01 16 56670900 56670900 C T MT1M 3'Flank 0.07 TCGA-75-7031-01 16 58148723 58148723 G A C16orf80 Silent p.N189N 0.14 TCGA-75-7031-01 16 66423424 66423424 G T CDH5 Missense_Mutation p.Q260H 0.45 deleterious(0.04) benign(0.009) TCGA-75-7031-01 16 67662384 67662384 C T CTCF Missense_Mutation p.R544C 0.39 deleterious(0.01) probably_damaging(0.943) TCGA-75-7031-01 16 70291981 70291981 G C AARS Missense_Mutation p.S711C 0.13 deleterious(0.03) probably_damaging(0.936) TCGA-75-7031-01 16 72993137 72993137 T C ZFHX3 Missense_Mutation p.H303R 0.20 possibly_damaging(0.84) TCGA-75-7031-01 16 78064472 78064472 G T CLEC3A Nonsense_Mutation p.E119* 0.20 TCGA-75-7031-01 16 81904518 81904518 T A PLCG2 Missense_Mutation p.L209H 0.25 deleterious(0) possibly_damaging(0.798) TCGA-75-7031-01 16 84513594 84513594 C A TLDC1 Missense_Mutation p.E432D 0.39 deleterious(0.03) benign(0.191) TCGA-75-7031-01 16 89761706 89761706 C T CDK10 Missense_Mutation p.T313M 0.18 deleterious(0.03) possibly_damaging(0.564) TCGA-75-7031-01 17 11686960 11686961 - A DNAH9 Intron 0.26 TCGA-75-7031-01 17 27448136 27448136 G A MYO18A Missense_Mutation p.R489C 0.27 deleterious(0.01) benign(0.344) TCGA-75-7031-01 17 67537921 67537921 C T MAP2K6 3'UTR 0.26 TCGA-75-7031-01 17 75208083 75208083 G T SEC14L1 Missense_Mutation p.V555L 0.21 deleterious(0.01) benign(0.433) TCGA-75-7031-01 17 7577089 7577094 GCGCCG - TP53 In_Frame_Del p.R282_R283del 0.45 TCGA-75-7031-01 17 78286894 78286894 G A RNF213 Nonsense_Mutation p.W913* 0.23 TCGA-75-7031-01 18 12262951 12262951 C A CIDEA Missense_Mutation p.Q56K 0.17 tolerated(0.78) benign(0.006) TCGA-75-7031-01 18 20716393 20716393 G A CABLES1 Missense_Mutation p.A223T 0.52 tolerated_low_confidence(0.16) benign(0.002) TCGA-75-7031-01 18 44036734 44036734 A T RNF165 3'UTR 0.73 TCGA-75-7031-01 18 60217600 60217600 C T ZCCHC2 Missense_Mutation p.S407L 0.58 deleterious(0.03) benign(0.169) TCGA-75-7031-01 18 63511198 63511198 T A CDH7 Missense_Mutation p.S378T 0.54 tolerated(0.6) benign(0.001) TCGA-75-7031-01 18 7040152 7040152 G A LAMA1 Missense_Mutation p.P449S 0.58 deleterious(0) probably_damaging(1) TCGA-75-7031-01 18 9257097 9257097 G T ANKRD12 Missense_Mutation p.A1278S 0.36 tolerated(0.36) benign(0.013) TCGA-75-7031-01 19 1080092 1080092 G C HMHA1 Missense_Mutation p.E576Q 0.53 deleterious(0.04) possibly_damaging(0.82) TCGA-75-7031-01 19 11417396 11417396 C T TSPAN16 Silent p.D189D 0.21 TCGA-75-7031-01 19 1220699 1220699 G T STK11 Missense_Mutation p.W239C 0.57 deleterious(0) probably_damaging(1) TCGA-75-7031-01 19 14755018 14755018 T C EMR3 Missense_Mutation p.R318G 0.41 deleterious(0.01) benign(0.13) TCGA-75-7031-01 19 1791815 1791815 G A ATP8B3 Missense_Mutation p.P746S 0.50 deleterious(0.01) probably_damaging(0.984) TCGA-75-7031-01 19 18368705 18368705 C A KIAA1683 Missense_Mutation p.R1130L 0.40 deleterious(0) probably_damaging(1) TCGA-75-7031-01 19 38876800 38876800 C T GGN Missense_Mutation p.G368R 0.50 deleterious_low_confidence(0) unknown(0) TCGA-75-7031-01 19 43858435 43858435 G T CD177 Silent p.R90R 0.34 TCGA-75-7031-01 19 55349245 55349245 A G KIR2DS4 Silent p.A95A 0.04 TCGA-75-7031-01 19 57326368 57326368 G A PEG3 Missense_Mutation p.H1148Y 0.39 tolerated(1) benign(0.013) TCGA-75-7031-01 19 57867553 57867553 G T ZNF304 Nonsense_Mutation p.E106* 0.16 TCGA-75-7031-01 1 103455108 103455108 C A COL11A1 Missense_Mutation p.G787V 0.33 unknown(0) TCGA-75-7031-01 1 103481288 103481288 C G COL11A1 Missense_Mutation p.G475A 0.45 probably_damaging(1) TCGA-75-7031-01 1 144930733 144930733 G A PDE4DIP Intron 0.15 TCGA-75-7031-01 1 145112502 145112502 G T SEC22B RNA 0.07 TCGA-75-7031-01 1 152944388 152944388 C T SPRR4 Missense_Mutation p.R8W 0.26 tolerated_low_confidence(0.07) unknown(0) TCGA-75-7031-01 1 154247719 154247719 A G HAX1 Missense_Mutation p.I216V 0.28 tolerated(1) possibly_damaging(0.54) TCGA-75-7031-01 1 154897618 154897618 C T PMVK Missense_Mutation p.R189H 0.29 tolerated(0.61) benign(0.001) TCGA-75-7031-01 1 158436005 158436005 C T OR10K1 Silent p.Y218Y 0.21 TCGA-75-7031-01 1 166927096 166927096 T A ILDR2 Missense_Mutation p.R97W 0.15 deleterious(0.01) probably_damaging(0.99) TCGA-75-7031-01 1 1685646 1685646 T G NADK Silent p.G460G 0.11 TCGA-75-7031-01 1 169951914 169951914 G A KIFAP3 Missense_Mutation p.P534L 0.25 deleterious(0) possibly_damaging(0.745) TCGA-75-7031-01 1 175365768 175365768 C G TNR Missense_Mutation p.E384D 0.36 tolerated(0.18) benign(0.107) TCGA-75-7031-01 1 176915135 176915135 C T ASTN1 Missense_Mutation p.G726R 0.26 tolerated(0.16) possibly_damaging(0.845) TCGA-75-7031-01 1 181735735 181735735 C A CACNA1E Silent p.I1623I 0.26 TCGA-75-7031-01 1 184672036 184672036 G A EDEM3 Silent p.F766F 0.13 TCGA-75-7031-01 1 186143734 186143734 A G HMCN1 Silent p.P5301P 0.35 TCGA-75-7031-01 1 196857314 196857314 T C CFHR4 Missense_Mutation p.W12R 0.19 deleterious(0) possibly_damaging(0.462) TCGA-75-7031-01 1 201356087 201356087 G C LAD1 Silent p.S134S 0.25 TCGA-75-7031-01 1 205129335 205129335 T C DSTYK Missense_Mutation p.N671S 0.28 tolerated(1) benign(0.001) TCGA-75-7031-01 1 211264027 211264027 G A KCNH1 Missense_Mutation p.P106S 0.11 tolerated(0.08) possibly_damaging(0.823) TCGA-75-7031-01 1 211654714 211654714 C A RD3 Missense_Mutation p.R15L 0.26 deleterious(0) probably_damaging(0.963) TCGA-75-7031-01 1 235599075 235599075 C T TBCE Silent p.L251L 0.28 TCGA-75-7031-01 1 237880604 237880604 G T RYR2 Missense_Mutation p.G3477V 0.26 probably_damaging(0.939) TCGA-75-7031-01 1 237880608 237880608 G T RYR2 Missense_Mutation p.L3478F 0.27 possibly_damaging(0.873) TCGA-75-7031-01 1 237886564 237886564 T A RYR2 Splice_Site p.X3563_splice 0.25 TCGA-75-7031-01 1 237947973 237947973 G T RYR2 Missense_Mutation p.G4321C 0.08 probably_damaging(0.987) TCGA-75-7031-01 1 238090285 238090285 C A RP11-193H5.1 RNA 0.27 TCGA-75-7031-01 1 247875544 247875544 G C OR6F1 Missense_Mutation p.R172G 0.36 tolerated(0.05) benign(0.112) TCGA-75-7031-01 1 247875899 247875899 A T OR6F1 Missense_Mutation p.H53Q 0.33 tolerated(0.63) benign(0.001) TCGA-75-7031-01 1 248487127 248487127 C A OR2M7 Silent p.V248V 0.26 TCGA-75-7031-01 1 248813774 248813774 G T OR2T27 Missense_Mutation p.R138S 0.28 tolerated(0.07) benign(0.406) TCGA-75-7031-01 1 25824898 25824898 G A TMEM57 Missense_Mutation p.E646K 0.17 tolerated(0.64) benign(0.138) TCGA-75-7031-01 1 26691246 26691246 C A ZNF683 Missense_Mutation p.G264V 0.18 deleterious(0.01) probably_damaging(0.979) TCGA-75-7031-01 1 38265344 38265344 C G MANEAL Silent p.A281A 0.20 TCGA-75-7031-01 1 55457596 55457596 T A TMEM61 Silent p.P151P 0.38 TCGA-75-7031-01 1 67155945 67155945 A C SGIP1 Missense_Mutation p.T506P 0.39 deleterious(0.01) probably_damaging(0.969) TCGA-75-7031-01 1 68944887 68944887 T C DEPDC1 Silent p.Q684Q 0.22 TCGA-75-7031-01 20 2448373 2448373 T C SNRPB Missense_Mutation p.H12R 0.45 tolerated(0.06) probably_damaging(0.93) TCGA-75-7031-01 20 30674477 30674477 A G HCK Silent p.P294P 0.12 TCGA-75-7031-01 20 32260229 32260229 C A NECAB3 Splice_Site p.X44_splice 0.42 TCGA-75-7031-01 20 34242137 34242137 G A RBM12 Missense_Mutation p.R370C 0.21 deleterious(0.02) benign(0.398) TCGA-75-7031-01 20 37580937 37580937 T G FAM83D Missense_Mutation p.L541R 0.17 tolerated(0.32) benign(0.011) TCGA-75-7031-01 20 42158990 42158990 G A L3MBTL1 Missense_Mutation p.A353T 0.20 deleterious(0) probably_damaging(0.973) TCGA-75-7031-01 20 5921749 5921749 C A TRMT6 Nonsense_Mutation p.G418* 0.34 TCGA-75-7031-01 20 60884853 60884853 C T LAMA5 Missense_Mutation p.A3623T 0.27 benign(0.13) TCGA-75-7031-01 20 61438897 61438897 G C OGFR Missense_Mutation p.M60I 0.31 tolerated(0.06) benign(0.057) TCGA-75-7031-01 20 61438987 61438987 G C OGFR Intron 0.37 TCGA-75-7031-01 20 62172566 62172566 G C SRMS Silent p.T421T 0.09 TCGA-75-7031-01 20 62594447 62594447 C A ZNF512B Splice_Site p.X656_splice 0.36 TCGA-75-7031-01 20 62905048 62905048 C T PCMTD2 3'UTR 0.17 TCGA-75-7031-01 21 28212871 28212871 C G ADAMTS1 Missense_Mutation p.L463F 0.19 deleterious(0) probably_damaging(1) TCGA-75-7031-01 21 31859623 31859623 C T KRTAP19-2 Silent p.L15L 0.39 TCGA-75-7031-01 21 46067232 46067232 C A KRTAP10-11 Missense_Mutation p.A286D 0.24 deleterious(0) possibly_damaging(0.887) TCGA-75-7031-01 22 32072908 32072908 C T PRR14L 3'Flank 0.21 TCGA-75-7031-01 22 32621724 32621724 G C SLC5A4 Missense_Mutation p.T456R 0.29 deleterious(0.01) possibly_damaging(0.555) TCGA-75-7031-01 2 11733209 11733209 C T GREB1 Silent p.C551C 0.35 TCGA-75-7031-01 2 163279777 163279777 C T KCNH7 Intron 0.15 TCGA-75-7031-01 2 168104328 168104328 G A XIRP2 Silent p.K2142K 0.06 TCGA-75-7031-01 2 179480201 179480201 G C TTN Missense_Mutation p.D16157E 0.42 TCGA-75-7031-01 2 185803031 185803031 C G ZNF804A Missense_Mutation p.L970V 0.13 deleterious(0.05) probably_damaging(0.952) TCGA-75-7031-01 2 187605026 187605026 G A FAM171B Missense_Mutation p.E104K 0.38 deleterious(0.03) possibly_damaging(0.559) TCGA-75-7031-01 2 190428482 190428484 TGA - SLC40A1 In_Frame_Del p.S410del 0.12 TCGA-75-7031-01 2 201785816 201785816 C G ORC2 Missense_Mutation p.Q398H 0.14 tolerated(0.08) possibly_damaging(0.903) TCGA-75-7031-01 2 46986926 46986926 C T SOCS5 Silent p.F419F 0.37 TCGA-75-7031-01 2 74589189 74589189 G A DCTN1 Missense_Mutation p.A1230V 0.30 tolerated(0.13) benign(0.014) TCGA-75-7031-01 2 98171707 98171707 C A ANKRD36B RNA 0.35 TCGA-75-7031-01 2 99685410 99685410 G C TSGA10 Missense_Mutation p.Q387E 0.33 tolerated(0.99) benign(0.076) TCGA-75-7031-01 3 100951633 100951633 G - IMPG2 Frame_Shift_Del p.I1076Ffs*25 0.33 TCGA-75-7031-01 3 112054808 112054808 G - CD200 Frame_Shift_Del p.G12Afs*9 0.19 TCGA-75-7031-01 3 112648254 112648254 C A CD200R1 Silent p.L101L 0.19 TCGA-75-7031-01 3 122437372 122437373 - A PARP14 Frame_Shift_Ins p.S1459Kfs*2 0.10 TCGA-75-7031-01 3 128356933 128356933 T G RPN1 Silent p.T114T 0.14 TCGA-75-7031-01 3 128356934 128356934 G A RPN1 Missense_Mutation p.T114I 0.14 tolerated(0.12) benign(0.222) TCGA-75-7031-01 3 129140321 129140321 C A EFCAB12 Missense_Mutation p.W125C 0.25 deleterious(0.02) benign(0.235) TCGA-75-7031-01 3 154884801 154884801 G T MME Missense_Mutation p.D591Y 0.37 deleterious(0.03) probably_damaging(0.97) TCGA-75-7031-01 3 155210596 155210596 T A PLCH1 Missense_Mutation p.K731N 0.13 deleterious(0) probably_damaging(0.999) TCGA-75-7031-01 3 194149591 194149591 A - ATP13A3 Frame_Shift_Del p.L977Wfs*2 0.16 TCGA-75-7031-01 3 19962031 19962031 C G EFHB Missense_Mutation p.R273T 0.23 tolerated(0.43) benign(0.034) TCGA-75-7031-01 3 20216419 20216419 T G SGOL1 Missense_Mutation p.I202L 0.16 tolerated(1) benign(0) TCGA-75-7031-01 3 38065883 38065883 C A PLCD1 Missense_Mutation p.E14D 0.33 tolerated(0.15) benign(0.001) TCGA-75-7031-01 3 47286388 47286388 G A KIF9 Silent p.H469H 0.19 TCGA-75-7031-01 3 71161757 71161757 T C FOXP1 Missense_Mutation p.Q73R 0.14 deleterious_low_confidence(0.01) benign(0.009) TCGA-75-7031-01 4 126370496 126370496 G C FAT4 Missense_Mutation p.Q2775H 0.36 possibly_damaging(0.781) TCGA-75-7031-01 4 144106691 144106691 G T USP38 Nonsense_Mutation p.E30* 0.10 TCGA-75-7031-01 4 146463737 146463737 A G SMAD1 Missense_Mutation p.D221G 0.20 tolerated(0.16) benign(0.001) TCGA-75-7031-01 4 147796034 147796034 C T TTC29 Silent p.L211L 0.14 TCGA-75-7031-01 4 176572989 176572989 C A GPM6A Missense_Mutation p.Q179H 0.40 deleterious(0.03) benign(0.291) TCGA-75-7031-01 4 184580164 184580164 G A RWDD4 5'UTR 0.36 TCGA-75-7031-01 4 1918692 1918692 A C WHSC1 Missense_Mutation p.E285D 0.32 tolerated(0.11) benign(0.217) TCGA-75-7031-01 4 1918695 1918695 A G WHSC1 Silent p.G286G 0.30 TCGA-75-7031-01 4 628571 628571 G T PDE6B Missense_Mutation p.A192S 0.38 deleterious(0.01) possibly_damaging(0.856) TCGA-75-7031-01 4 66467497 66467497 C T EPHA5 Missense_Mutation p.V258M 0.12 deleterious(0) probably_damaging(0.986) TCGA-75-7031-01 4 70361289 70361289 C T UGT2B4 Nonsense_Mutation p.W97* 0.17 TCGA-75-7031-01 4 70599959 70599959 G C SULT1B1 Silent p.A133A 0.24 TCGA-75-7031-01 4 73185609 73185609 A G ADAMTS3 Missense_Mutation p.S392P 0.15 deleterious(0) probably_damaging(0.999) TCGA-75-7031-01 4 88533832 88533832 G T DSPP Missense_Mutation p.G165V 0.27 probably_damaging(0.982) TCGA-75-7031-01 4 89410318 89410318 G C HERC5 Missense_Mutation p.S655T 0.33 tolerated(0.53) benign(0.019) TCGA-75-7031-01 5 118468905 118468905 C G DMXL1 Nonsense_Mutation p.S465* 0.21 TCGA-75-7031-01 5 121188315 121188315 G T FTMT Silent p.G219G 0.27 TCGA-75-7031-01 5 128364079 128364079 T - SLC27A6 Frame_Shift_Del p.I500Lfs*31 0.24 TCGA-75-7031-01 5 140573212 140573212 A T PCDHB10 Missense_Mutation p.T363S 0.30 deleterious_low_confidence(0.02) benign(0.072) TCGA-75-7031-01 5 145895386 145895386 C T GPR151 Silent p.T97T 0.17 TCGA-75-7031-01 5 148691741 148691741 C T AFAP1L1 Missense_Mutation p.L332F 0.10 tolerated(0.86) benign(0.007) TCGA-75-7031-01 5 149324039 149324039 C A PDE6A Silent p.R66R 0.46 TCGA-75-7031-01 5 150701555 150701555 T C SLC36A2 Intron 0.30 TCGA-75-7031-01 5 157216486 157216486 G A CLINT1 Silent p.T490T 0.27 TCGA-75-7031-01 5 169454937 169454937 A T DOCK2 Missense_Mutation p.Q1151L 0.20 tolerated(0.3) benign(0.002) TCGA-75-7031-01 5 175110355 175110355 G C HRH2 Missense_Mutation p.C40S 0.17 deleterious(0) probably_damaging(1) TCGA-75-7031-01 5 177421211 177421211 G T PROP1 Missense_Mutation p.Q80K 0.33 deleterious(0) possibly_damaging(0.72) TCGA-75-7031-01 5 19571797 19571797 G A CDH18 Silent p.L382L 0.58 TCGA-75-7031-01 5 21783553 21783553 C A CDH12 Missense_Mutation p.G436V 0.22 tolerated(0.21) benign(0.009) TCGA-75-7031-01 5 40852497 40852497 A T CARD6 Nonsense_Mutation p.K355* 0.13 TCGA-75-7031-01 5 83476214 83476214 G T EDIL3 Missense_Mutation p.H118N 0.42 tolerated(1) benign(0.341) TCGA-75-7031-01 6 10402725 10402725 C A TFAP2A Nonsense_Mutation p.G295* 0.25 TCGA-75-7031-01 6 105564592 105564592 G T BVES Missense_Mutation p.P267H 0.29 deleterious(0) probably_damaging(0.995) TCGA-75-7031-01 6 144086516 144086516 A G PHACTR2 Silent p.T271T 0.27 TCGA-75-7031-01 6 152577782 152577782 T C SYNE1 Missense_Mutation p.E6364G 0.16 benign(0.298) TCGA-75-7031-01 6 31110737 31110737 G C CCHCR1 Intron 0.14 TCGA-75-7031-01 6 33143435 33143435 G A COL11A2 Silent p.S678S 0.25 TCGA-75-7031-01 6 33371649 33371649 C A KIFC1 Missense_Mutation p.L167I 0.08 deleterious(0.01) probably_damaging(0.983) TCGA-75-7031-01 6 34741486 34741486 G T SNRPC 3'UTR 0.36 TCGA-75-7031-01 6 38702281 38702281 A T DNAH8 5'UTR 0.37 TCGA-75-7031-01 6 5368790 5368790 G T FARS2 5'UTR 0.08 TCGA-75-7031-01 6 55039538 55039538 A G HCRTR2 Silent p.K51K 0.21 TCGA-75-7031-01 7 100680373 100680373 T A MUC17 Silent p.A1892A 0.30 TCGA-75-7031-01 7 101957824 101957824 G A SH2B2 Missense_Mutation p.E490K 0.39 deleterious(0.01) probably_damaging(0.991) TCGA-75-7031-01 7 103131239 103131239 G T RELN Missense_Mutation p.P3161T 0.29 deleterious(0) benign(0.407) TCGA-75-7031-01 7 103301870 103301870 G T RELN Missense_Mutation p.S465Y 0.11 tolerated(1) benign(0) TCGA-75-7031-01 7 107880607 107880607 G T NRCAM 5'UTR 0.25 TCGA-75-7031-01 7 128415840 128415840 C G OPN1SW Missense_Mutation p.R2T 0.17 tolerated(0.05) benign(0.005) TCGA-75-7031-01 7 142573427 142573427 G T TRPV6 Missense_Mutation p.Q306K 0.38 tolerated(0.51) benign(0.118) TCGA-75-7031-01 7 143048757 143048757 A G CLCN1 Missense_Mutation p.N889S 0.27 tolerated(0.11) benign(0.005) TCGA-75-7031-01 7 143701089 143701089 T C OR6B1 5'UTR 0.27 TCGA-75-7031-01 7 149494420 149494420 C T SSPO RNA 0.31 TCGA-75-7031-01 7 151851382 151851382 T G KMT2C Missense_Mutation p.I4037L 0.28 probably_damaging(0.982) TCGA-75-7031-01 7 31862700 31862700 G T PDE1C Silent p.A583A 0.23 TCGA-75-7031-01 7 31862701 31862701 G A PDE1C Missense_Mutation p.A583V 0.23 tolerated(0.13) benign(0.342) TCGA-75-7031-01 7 36338768 36338768 G A EEPD1 Missense_Mutation p.G555R 0.39 tolerated(0.13) benign(0.006) TCGA-75-7031-01 7 47970761 47970761 T A PKD1L1 Missense_Mutation p.Q226L 0.30 tolerated(0.34) benign(0.003) TCGA-75-7031-01 7 5410417 5410417 C T TNRC18 Missense_Mutation p.V1270M 0.31 benign(0.095) TCGA-75-7031-01 7 81336617 81336617 A C HGF Missense_Mutation p.C535W 0.33 deleterious(0) probably_damaging(0.997) TCGA-75-7031-01 7 82389981 82389981 G A PCLO Silent p.L5088L 0.30 TCGA-75-7031-01 7 82476456 82476456 G A PCLO Silent p.L4588L 0.20 TCGA-75-7031-01 7 82544659 82544659 C A PCLO Missense_Mutation p.D4215Y 0.34 unknown(0) TCGA-75-7031-01 7 93633659 93633659 G A BET1 5'UTR 0.18 TCGA-75-7031-01 7 97784092 97784092 C T LMTK2 Missense_Mutation p.T158M 0.24 deleterious(0) probably_damaging(0.988) TCGA-75-7031-01 8 101629862 101629862 C A SNX31 Nonsense_Mutation p.E140* 0.81 TCGA-75-7031-01 8 139380162 139380162 A C FAM135B Missense_Mutation p.L22R 0.16 deleterious(0) probably_damaging(0.999) TCGA-75-7031-01 8 142367203 142367203 G A GPR20 Missense_Mutation p.T274M 0.13 tolerated(0.08) possibly_damaging(0.631) TCGA-75-7031-01 8 21905620 21905620 G A FGF17 Missense_Mutation p.E171K 0.33 deleterious(0) benign(0.219) TCGA-75-7031-01 8 72964964 72964964 C A TRPA1 Missense_Mutation p.A561S 0.43 tolerated(0.09) possibly_damaging(0.851) TCGA-75-7031-01 8 86048051 86048051 A C LRRCC1 Missense_Mutation p.I728L 0.06 tolerated(0.32) benign(0.006) TCGA-75-7031-01 8 87242275 87242275 C A SLC7A13 Nonsense_Mutation p.G78* 0.72 TCGA-75-7031-01 8 92998504 92998504 G T RUNX1T1 Missense_Mutation p.T387N 0.10 deleterious(0) probably_damaging(0.968) TCGA-75-7031-01 9 104432614 104432614 G T GRIN3A Missense_Mutation p.L694M 0.36 deleterious(0) probably_damaging(0.996) TCGA-75-7031-01 9 107367545 107367545 G C OR13C2 Missense_Mutation p.R122G 0.19 deleterious(0) benign(0.273) TCGA-75-7031-01 9 113562828 113562828 C A MUSK Silent p.R724R 0.26 TCGA-75-7031-01 9 131711500 131711500 G T RP11-101E3.5 Missense_Mutation p.G43V 0.32 tolerated(0.06) possibly_damaging(0.726) TCGA-75-7031-01 9 15468839 15468839 T C PSIP1 Missense_Mutation p.I403M 0.50 deleterious(0) benign(0.403) TCGA-75-7031-01 9 16429929 16429929 T C BNC2 Intron 0.23 TCGA-75-7031-01 9 19577011 19577011 C A SLC24A2 Missense_Mutation p.R380I 0.33 deleterious(0.01) benign(0.096) TCGA-75-7031-01 9 87635146 87635146 T A NTRK2 Missense_Mutation p.I733N 0.31 deleterious(0) probably_damaging(0.999) TCGA-75-7031-01 X 102755508 102755508 G A RAB40A Silent p.D59D 0.11 TCGA-75-7031-01 X 106171515 106171515 G - CLDN2 Frame_Shift_Del p.G20Afs*22 0.27 TCGA-75-7031-01 X 113965991 113965991 C T HTR2C Silent p.P108P 0.37 TCGA-75-7031-01 X 129155080 129155080 C A BCORL1 Missense_Mutation p.P1188T 0.43 benign(0.018) TCGA-75-7031-01 X 131197496 131197496 C A MST4 Silent p.G103G 0.45 TCGA-75-7031-01 X 135638786 135638786 T G VGLL1 3'UTR 0.18 TCGA-75-7031-01 X 144905434 144905434 C A SLITRK2 Silent p.T497T 0.23 TCGA-75-7031-01 X 150349408 150349408 C A GPR50 Silent p.V451V 0.42 TCGA-75-7031-01 X 150349409 150349409 C T GPR50 Missense_Mutation p.H452Y 0.42 tolerated_low_confidence(0.08) benign(0.01) TCGA-75-7031-01 X 155233373 155233373 A G IL9R Missense_Mutation p.I96V 0.54 tolerated(1) benign(0.004) TCGA-75-7031-01 X 40568708 40568708 C G MED14 Missense_Mutation p.D393H 0.34 deleterious(0) probably_damaging(0.993) TCGA-75-7031-01 X 55513730 55513730 G C USP51 Nonsense_Mutation p.S548* 0.58 TCGA-75-7031-01 X 66765228 66765228 A G AR Silent p.Q80Q 0.43 TCGA-75-7031-01 X 70389453 70389453 G T NLGN3 Missense_Mutation p.G685W 0.61 deleterious(0.01) possibly_damaging(0.447) TCGA-75-7031-01 X 70779444 70779444 T A OGT Missense_Mutation p.C590S 0.36 deleterious(0.02) probably_damaging(0.989) TCGA-75-7031-01 X 70783197 70783197 G A OGT Missense_Mutation p.G762R 0.24 tolerated_low_confidence(0.13) benign(0.073) TCGA-75-7031-01 X 75650019 75650019 C G MAGEE1 Missense_Mutation p.P566A 0.43 tolerated(0.06) possibly_damaging(0.67) TCGA-75-7031-01 X 77267089 77267089 C A ATP7A Missense_Mutation p.S697Y 0.41 deleterious(0.01) possibly_damaging(0.555) TCGA-75-7031-01 X 83129064 83129064 C A CYLC1 Missense_Mutation p.P450T 0.29 deleterious(0.03) benign(0.136) TCGA-75-7031-01 X 83724259 83724259 G T HDX Missense_Mutation p.Q158K 0.12 tolerated(0.05) benign(0.057) TCGA-75-7031-01 X 99933659 99933659 C A SYTL4 Intron 0.37 TCGA-78-7145-01 10 103826990 103826990 G A HPS6 Missense_Mutation p.A587T 0.40 tolerated(0.56) probably_damaging(0.999) TCGA-78-7145-01 10 115348728 115348728 C T NRAP 3'UTR 0.34 TCGA-78-7145-01 10 117228685 117228685 G T ATRNL1 Missense_Mutation p.G1167V 0.41 tolerated(0.07) probably_damaging(1) TCGA-78-7145-01 10 119303110 119303110 C T EMX2 Missense_Mutation p.S111L 0.22 tolerated(0.21) benign(0.069) TCGA-78-7145-01 10 45644202 45644202 G A RP11-445N18.7 RNA 0.60 TCGA-78-7145-01 10 60998401 60998401 G A PHYHIPL Missense_Mutation p.G178R 0.20 tolerated(0.07) probably_damaging(0.987) TCGA-78-7145-01 10 68857466 68857466 C A LRRTM3 Missense_Mutation p.T553K 0.16 tolerated_low_confidence(0.93) benign(0.064) TCGA-78-7145-01 10 74034719 74034719 C T DDIT4 Missense_Mutation p.H158Y 0.24 tolerated(0.25) benign(0.013) TCGA-78-7145-01 11 111367899 111367900 - A BTG4 Intron 0.44 TCGA-78-7145-01 11 124189303 124189303 G T OR8D2 Missense_Mutation p.S264Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-78-7145-01 11 128807581 128807582 GT - TP53AIP1 Frame_Shift_Del p.P45Wfs*57 0.12 TCGA-78-7145-01 11 32413517 32413517 C T WT1 Splice_Site p.X478_splice 0.26 TCGA-78-7145-01 11 48285577 48285577 C T OR4X1 Silent p.S55S 0.38 TCGA-78-7145-01 11 48286115 48286115 C A OR4X1 Missense_Mutation p.L235I 0.31 deleterious(0) probably_damaging(0.974) TCGA-78-7145-01 11 49208288 49208288 C A FOLH1 Nonsense_Mutation p.E183* 0.15 TCGA-78-7145-01 11 49974135 49974135 G T OR4C13 Missense_Mutation p.R54I 0.33 deleterious_low_confidence(0) benign(0.017) TCGA-78-7145-01 11 5264337 5264337 A C HBG1 3'Flank 0.22 TCGA-78-7145-01 11 5474928 5474928 T A OR51I2 Missense_Mutation p.D70E 0.27 tolerated(0.06) probably_damaging(0.996) TCGA-78-7145-01 11 55433305 55433305 C A OR4C6 Nonsense_Mutation p.C221* 0.35 TCGA-78-7145-01 11 5809749 5809749 G T OR52N1 Missense_Mutation p.L100I 0.30 deleterious(0.03) probably_damaging(0.998) TCGA-78-7145-01 11 6007176 6007176 C A OR52L1 Missense_Mutation p.D329Y 0.36 deleterious(0) benign(0.002) TCGA-78-7145-01 11 6007177 6007177 C A OR52L1 Missense_Mutation p.K328N 0.36 deleterious(0.02) possibly_damaging(0.735) TCGA-78-7145-01 11 6291107 6291107 C T CCKBR Silent p.F120F 0.20 TCGA-78-7145-01 11 67864558 67864558 A T CHKA Silent p.P130P 0.34 TCGA-78-7145-01 11 69972201 69972201 G C ANO1 Missense_Mutation p.A333P 0.34 deleterious(0.01) probably_damaging(0.945) TCGA-78-7145-01 11 7441778 7441778 A T SYT9 Missense_Mutation p.N460I 0.30 tolerated(0.34) possibly_damaging(0.878) TCGA-78-7145-01 11 74880349 74880349 G A SLCO2B1 Missense_Mutation p.V194M 0.32 tolerated(0.38) benign(0.034) TCGA-78-7145-01 11 7723352 7723352 A T OVCH2 Missense_Mutation p.F157Y 0.40 tolerated(1) possibly_damaging(0.786) TCGA-78-7145-01 11 93913424 93913424 G T PANX1 Splice_Site p.X401_splice 0.12 TCGA-78-7145-01 12 104033930 104033930 G C STAB2 Missense_Mutation p.Q312H 0.37 tolerated(0.32) benign(0) TCGA-78-7145-01 12 104054150 104054150 C A STAB2 Silent p.V592V 0.31 TCGA-78-7145-01 12 107937911 107937911 G C BTBD11 Silent p.V495V 0.39 TCGA-78-7145-01 12 114793477 114793477 G T TBX5 Missense_Mutation p.Q473K 0.22 tolerated(0.1) benign(0.227) TCGA-78-7145-01 12 123270367 123270367 G T CCDC62 Missense_Mutation p.K166N 0.33 deleterious(0) benign(0.039) TCGA-78-7145-01 12 130649097 130649097 G T FZD10 Missense_Mutation p.R537L 0.32 deleterious(0.01) benign(0.202) TCGA-78-7145-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.58 deleterious(0) benign(0.361) TCGA-78-7145-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.58 deleterious(0.04) probably_damaging(0.993) TCGA-78-7145-01 12 41967321 41967321 C A PDZRN4 Missense_Mutation p.R914S 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-78-7145-01 12 45568343 45568343 C A PLEKHA8P1 RNA 0.39 TCGA-78-7145-01 12 6127901 6127901 G T VWF Silent p.I1561I 0.62 TCGA-78-7145-01 12 88548080 88548080 G T TMTC3 Nonsense_Mutation p.G142* 0.45 TCGA-78-7145-01 12 88548081 88548081 G T TMTC3 Missense_Mutation p.G142V 0.45 deleterious(0) probably_damaging(1) TCGA-78-7145-01 12 97043823 97043823 A T C12orf55 Missense_Mutation p.K1615N 0.32 tolerated(0.12) possibly_damaging(0.785) TCGA-78-7145-01 13 41134854 41134854 G A FOXO1 Silent p.D258D 0.63 TCGA-78-7145-01 14 106993928 106993928 G T IGHV3-48 Nonsense_Mutation p.Y79* 0.09 TCGA-78-7145-01 14 24909934 24909934 C T SDR39U1 Intron 0.40 TCGA-78-7145-01 14 25326295 25326295 C A STXBP6 Missense_Mutation p.V75F 0.36 deleterious(0.04) possibly_damaging(0.448) TCGA-78-7145-01 14 57937996 57937996 C G C14orf105 3'UTR 0.24 TCGA-78-7145-01 14 70633417 70633417 C A SLC8A3 Missense_Mutation p.G575C 0.35 deleterious(0.02) probably_damaging(1) TCGA-78-7145-01 14 89341421 89341421 C T TTC8 Missense_Mutation p.P467S 0.35 deleterious(0) probably_damaging(0.991) TCGA-78-7145-01 14 92909770 92909770 G T SLC24A4 Silent p.V203V 0.39 TCGA-78-7145-01 15 102346553 102346553 T C OR4F6 Missense_Mutation p.F211L 0.53 deleterious_low_confidence(0.02) benign(0.327) TCGA-78-7145-01 15 34395533 34395533 G A PGBD4 Silent p.P267P 0.35 TCGA-78-7145-01 15 40655997 40655997 G A DISP2 Silent p.R97R 0.41 TCGA-78-7145-01 16 23080722 23080722 C A USP31 Missense_Mutation p.A902S 0.33 tolerated_low_confidence(0.12) benign(0.145) TCGA-78-7145-01 16 32264990 32264990 A T TP53TG3D Missense_Mutation p.T106S 0.30 tolerated_low_confidence(0.74) possibly_damaging(0.486) TCGA-78-7145-01 16 32890646 32890646 C A SLC6A10P RNA 0.32 TCGA-78-7145-01 16 33020647 33020647 T A IGHV3OR16-8 Missense_Mutation p.C19S 0.35 deleterious_low_confidence(0.04) possibly_damaging(0.749) TCGA-78-7145-01 16 4164490 4164490 C A ADCY9 Missense_Mutation p.M318I 0.48 tolerated(0.05) benign(0.222) TCGA-78-7145-01 16 58537784 58537784 C A NDRG4 Missense_Mutation p.T87N 0.37 deleterious(0) probably_damaging(1) TCGA-78-7145-01 16 71571481 71571481 C T CHST4 Missense_Mutation p.H301Y 0.31 tolerated(0.06) benign(0.006) TCGA-78-7145-01 16 74394620 74394620 G A RP11-252A24.2 RNA 0.34 TCGA-78-7145-01 16 89985766 89985766 C T MC1R Missense_Mutation p.R34W 0.10 tolerated(0.15) benign(0) TCGA-78-7145-01 17 21826173 21826173 C A FAM27L RNA 0.32 TCGA-78-7145-01 17 34958541 34958541 G A MRM1 Missense_Mutation p.R101Q 0.44 tolerated(0.15) benign(0.166) TCGA-78-7145-01 17 45473278 45473278 C G EFCAB13 Missense_Mutation p.S627C 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-78-7145-01 17 56676480 56676480 G A TEX14 Silent p.H748H 0.28 TCGA-78-7145-01 17 56700349 56700349 A T TEX14 Silent p.P92P 0.24 TCGA-78-7145-01 17 61781958 61781958 C T STRADA Intron 0.64 TCGA-78-7145-01 17 7578455 7578455 C G TP53 Missense_Mutation p.A159P 0.65 deleterious(0) probably_damaging(0.991) TCGA-78-7145-01 18 13737099 13737099 G A RNMT Nonsense_Mutation p.W215* 0.37 TCGA-78-7145-01 18 13826520 13826520 C A MC5R Silent p.A252A 0.21 TCGA-78-7145-01 18 56274588 56274588 C G ALPK2 Missense_Mutation p.E65Q 0.06 tolerated(0.14) possibly_damaging(0.49) TCGA-78-7145-01 19 14865885 14865885 C A EMR2 Nonsense_Mutation p.G491* 0.69 TCGA-78-7145-01 19 21131729 21131729 T C ZNF85 Missense_Mutation p.C137R 0.18 deleterious(0.02) benign(0.111) TCGA-78-7145-01 19 23159426 23159426 C A ZNF728 Missense_Mutation p.S238I 0.40 tolerated(0.05) benign(0.185) TCGA-78-7145-01 19 40367787 40367787 G A FCGBP Silent p.C4391C 0.22 TCGA-78-7145-01 19 49675355 49675355 C G TRPM4 Silent p.A380A 0.40 TCGA-78-7145-01 19 53454526 53454526 G A ZNF816 Missense_Mutation p.H168Y 0.21 deleterious(0.01) possibly_damaging(0.673) TCGA-78-7145-01 19 55301604 55301604 T C CTB-61M7.1 RNA 0.28 TCGA-78-7145-01 19 55301605 55301605 C A CTB-61M7.1 RNA 0.28 TCGA-78-7145-01 19 6187335 6187335 C A ACSBG2 Missense_Mutation p.P528T 0.69 deleterious(0.01) probably_damaging(0.991) TCGA-78-7145-01 19 7975916 7975916 G T MAP2K7 Missense_Mutation p.D243Y 0.62 deleterious(0) probably_damaging(1) TCGA-78-7145-01 19 9065219 9065219 G C MUC16 Silent p.S7409S 0.09 TCGA-78-7145-01 19 9087031 9087031 G T MUC16 Missense_Mutation p.T1595K 0.63 unknown(0) TCGA-78-7145-01 1 101704965 101704965 G T S1PR1 Missense_Mutation p.R142L 0.32 deleterious(0) probably_damaging(1) TCGA-78-7145-01 1 13001288 13001288 T G PRAMEF6 Missense_Mutation p.K132T 0.05 tolerated(0.58) benign(0.354) TCGA-78-7145-01 1 14106289 14106289 C G PRDM2 Missense_Mutation p.L667V 0.51 benign(0.298) TCGA-78-7145-01 1 151820257 151820257 G T THEM5 Silent p.I219I 0.32 TCGA-78-7145-01 1 152324012 152324012 G T FLG2 Missense_Mutation p.H2084N 0.21 possibly_damaging(0.603) TCGA-78-7145-01 1 155006119 155006119 G A DCST2 Missense_Mutation p.A20V 0.31 tolerated(0.18) benign(0.019) TCGA-78-7145-01 1 156255576 156255576 G - TMEM79 Frame_Shift_Del p.G188Afs*11 0.27 TCGA-78-7145-01 1 160324028 160324028 C G NCSTN Missense_Mutation p.R434G 0.16 tolerated(0.1) benign(0.026) TCGA-78-7145-01 1 160523270 160523270 G T CD84 Missense_Mutation p.R220S 0.24 tolerated(0.3) benign(0.016) TCGA-78-7145-01 1 182026538 182026538 G T ZNF648 Missense_Mutation p.T203K 0.51 tolerated(0.21) benign(0.197) TCGA-78-7145-01 1 220824025 220824025 G A MARK1 Missense_Mutation p.D512N 0.45 tolerated(0.1) benign(0.009) TCGA-78-7145-01 1 227843408 227843408 A G ZNF678 Missense_Mutation p.E486G 0.30 deleterious(0.02) possibly_damaging(0.496) TCGA-78-7145-01 1 24658015 24658015 G A GRHL3 Silent p.P39P 0.15 TCGA-78-7145-01 1 248637509 248637509 C G OR2T3 Missense_Mutation p.F286L 0.18 tolerated(1) benign(0.001) TCGA-78-7145-01 1 43308742 43308742 G T ERMAP Missense_Mutation p.V423F 0.36 tolerated(0.12) benign(0.014) TCGA-78-7145-01 1 4829932 4829932 C A AJAP1 Silent p.I283I 0.43 TCGA-78-7145-01 1 51436088 51436088 G A CDKN2C Silent p.G16G 0.14 TCGA-78-7145-01 1 52800415 52800415 C T ZFYVE9 Silent p.Y1215Y 0.33 TCGA-78-7145-01 1 52867035 52867035 A G ORC1 Silent p.D74D 0.12 TCGA-78-7145-01 1 52926859 52926859 C A ZCCHC11 Missense_Mutation p.A1090S 0.48 deleterious(0.05) possibly_damaging(0.825) TCGA-78-7145-01 1 55144499 55144499 C T MROH7 Missense_Mutation p.P674L 0.31 deleterious(0.03) possibly_damaging(0.792) TCGA-78-7145-01 1 70300548 70300548 G C LRRC7 Missense_Mutation p.G158R 0.34 deleterious(0) probably_damaging(1) TCGA-78-7145-01 1 7723976 7723976 C T CAMTA1 Missense_Mutation p.P457S 0.12 tolerated_low_confidence(0.35) benign(0.026) TCGA-78-7145-01 1 82409007 82409007 A T LPHN2 Missense_Mutation p.H251L 0.21 deleterious(0) probably_damaging(0.969) TCGA-78-7145-01 20 31022609 31022609 G T ASXL1 Silent p.P698P 0.27 TCGA-78-7145-01 20 48522689 48522689 T A SPATA2 Missense_Mutation p.R344W 0.49 deleterious(0.01) probably_damaging(0.989) TCGA-78-7145-01 20 5294591 5294591 G T PROKR2 Missense_Mutation p.S142Y 0.53 deleterious(0) probably_damaging(0.999) TCGA-78-7145-01 21 38538740 38538740 G T TTC3 Missense_Mutation p.E1408D 0.49 tolerated(0.15) benign(0.001) TCGA-78-7145-01 21 44524456 44524456 G A U2AF1 Missense_Mutation p.S34F 0.30 deleterious(0) possibly_damaging(0.835) TCGA-78-7145-01 22 32546391 32546391 A G C22orf42 Missense_Mutation p.L190P 0.49 tolerated_low_confidence(0.06) possibly_damaging(0.883) TCGA-78-7145-01 22 38211724 38211724 G C GCAT Missense_Mutation p.R316P 0.45 deleterious(0) probably_damaging(0.997) TCGA-78-7145-01 22 51015406 51015406 G A CPT1B Silent p.S113S 0.45 TCGA-78-7145-01 2 121726325 121726325 C A GLI2 Missense_Mutation p.L227M 0.21 tolerated(0.06) possibly_damaging(0.839) TCGA-78-7145-01 2 130877604 130877604 C A POTEF Missense_Mutation p.R162M 0.55 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-78-7145-01 2 141108413 141108413 T C LRP1B Missense_Mutation p.K3949E 0.32 benign(0.292) TCGA-78-7145-01 2 141108467 141108467 G C LRP1B Missense_Mutation p.Q3931E 0.21 benign(0.042) TCGA-78-7145-01 2 152267818 152267818 A T RIF1 Missense_Mutation p.E50V 0.38 tolerated(0.15) benign(0.266) TCGA-78-7145-01 2 165353575 165353575 T C GRB14 Missense_Mutation p.H442R 0.18 deleterious(0) possibly_damaging(0.628) TCGA-78-7145-01 2 179425863 179425863 A G TTN Silent p.A28332A 0.25 TCGA-78-7145-01 2 179542483 179542483 G A TTN Missense_Mutation p.P11386S 0.21 TCGA-78-7145-01 2 220161970 220161970 C A PTPRN Silent p.T691T 0.42 TCGA-78-7145-01 2 234436148 234436148 C A USP40 Missense_Mutation p.A555S 0.53 deleterious(0) probably_damaging(0.994) TCGA-78-7145-01 2 238250709 238250709 C T COL6A3 Silent p.L2588L 0.19 TCGA-78-7145-01 2 27423289 27423289 G A SLC5A6 3'UTR 0.21 TCGA-78-7145-01 2 37132762 37132762 C A STRN Splice_Site p.X138_splice 0.17 TCGA-78-7145-01 2 45233362 45233362 G T SIX2 Missense_Mutation p.Q275K 0.10 deleterious_low_confidence(0) benign(0.159) TCGA-78-7145-01 2 63631787 63631787 C A WDPCP Silent p.L277L 0.31 TCGA-78-7145-01 2 73899935 73899935 G C ALMS1P Intron 0.30 TCGA-78-7145-01 2 85777724 85777724 G A GGCX Nonsense_Mutation p.R680* 0.42 TCGA-78-7145-01 2 90139140 90139140 C A IGKV1D-16 Silent p.L12L 0.23 TCGA-78-7145-01 3 101574687 101574687 A G NFKBIZ Missense_Mutation p.K589E 0.34 tolerated(0.11) possibly_damaging(0.573) TCGA-78-7145-01 3 130159301 130159301 T A COL6A5 Missense_Mutation p.L2040Q 0.17 tolerated(0.14) benign(0.285) TCGA-78-7145-01 3 138456718 138456718 C A PIK3CB Missense_Mutation p.S211I 0.18 deleterious(0.04) possibly_damaging(0.716) TCGA-78-7145-01 3 149193609 149193609 G T TM4SF4 Splice_Site p.X59_splice 0.30 TCGA-78-7145-01 3 32495741 32495741 G T CMTM7 Missense_Mutation p.V175F 0.28 deleterious(0) possibly_damaging(0.612) TCGA-78-7145-01 3 42685392 42685392 A T NKTR Splice_Site p.X1400_splice 0.39 TCGA-78-7145-01 3 52088311 52088311 C A DUSP7 Silent p.S199S 0.24 TCGA-78-7145-01 3 74316416 74316416 C T CNTN3 Splice_Site p.X939_splice 0.14 TCGA-78-7145-01 3 74411066 74411066 C - CNTN3 Frame_Shift_Del p.D447Mfs*2 0.21 TCGA-78-7145-01 3 74474018 74474018 G A CNTN3 Silent p.C144C 0.26 TCGA-78-7145-01 3 89528692 89528692 G T EPHA3 3'UTR 0.36 TCGA-78-7145-01 4 113436575 113436575 C A NEUROG2 Silent p.L19L 0.20 TCGA-78-7145-01 4 146560343 146560343 A G MMAA Missense_Mutation p.R18G 0.23 deleterious_low_confidence(0.01) benign(0) TCGA-78-7145-01 4 154625452 154625452 A T TLR2 Missense_Mutation p.S465C 0.55 deleterious(0) probably_damaging(0.998) TCGA-78-7145-01 4 173942643 173942643 G A GALNTL6 Nonsense_Mutation p.W502* 0.43 TCGA-78-7145-01 4 185622019 185622019 T A CENPU Missense_Mutation p.E314V 0.29 deleterious(0.01) probably_damaging(0.984) TCGA-78-7145-01 4 4214688 4214688 G T OTOP1 Nonsense_Mutation p.C149* 0.24 TCGA-78-7145-01 4 57843074 57843074 C G NOA1 Silent p.L226L 0.20 TCGA-78-7145-01 4 678304 678304 C A MFSD7 Nonsense_Mutation p.E270* 0.45 TCGA-78-7145-01 4 71201618 71201618 G T CABS1 Missense_Mutation p.D288Y 0.26 deleterious(0) probably_damaging(0.984) TCGA-78-7145-01 4 73148902 73148902 T G ADAMTS3 Missense_Mutation p.K1190T 0.12 deleterious_low_confidence(0.04) benign(0.025) TCGA-78-7145-01 4 76725312 76725312 A T USO1 Missense_Mutation p.Q680L 0.53 tolerated(0.24) benign(0.008) TCGA-78-7145-01 5 101834498 101834498 C A SLCO6A1 Missense_Mutation p.R17S 0.37 tolerated(0.73) benign(0.003) TCGA-78-7145-01 5 111595633 111595633 C A EPB41L4A Missense_Mutation p.G229V 0.40 deleterious(0) probably_damaging(1) TCGA-78-7145-01 5 140264024 140264024 C T PCDHA13 Missense_Mutation p.S724L 0.22 deleterious_low_confidence(0.02) benign(0.041) TCGA-78-7145-01 5 140572009 140572009 G A PCDHB10 5'UTR 0.38 TCGA-78-7145-01 5 140736223 140736223 C T PCDHGA4 Nonsense_Mutation p.R486* 0.24 TCGA-78-7145-01 5 149357882 149357882 A C SLC26A2 Missense_Mutation p.S223R 0.56 deleterious(0.02) benign(0.342) TCGA-78-7145-01 5 149447883 149447883 C A CSF1R Silent p.T507T 0.23 TCGA-78-7145-01 5 171765873 171765873 G A SH3PXD2B Missense_Mutation p.P746S 0.24 tolerated_low_confidence(0.11) benign(0.012) TCGA-78-7145-01 5 175111128 175111128 G A HRH2 Missense_Mutation p.G298R 0.34 deleterious(0) benign(0.251) TCGA-78-7145-01 5 22078729 22078729 G A CDH12 Silent p.L19L 0.12 TCGA-78-7145-01 5 24498613 24498613 G A CDH10 Missense_Mutation p.T470I 0.60 tolerated(0.96) benign(0.057) TCGA-78-7145-01 5 33576368 33576368 G T ADAMTS12 Missense_Mutation p.H1255N 0.50 tolerated(0.38) benign(0.025) TCGA-78-7145-01 5 43700243 43700243 G T NNT Missense_Mutation p.G967C 0.17 deleterious(0) probably_damaging(1) TCGA-78-7145-01 5 54968503 54968503 G C SLC38A9 Missense_Mutation p.T45R 0.07 tolerated(0.65) benign(0.02) TCGA-78-7145-01 6 108502054 108502054 C A NR2E1 Silent p.I261I 0.24 TCGA-78-7145-01 6 109787215 109787215 G A ZBTB24 Silent p.L645L 0.47 TCGA-78-7145-01 6 111983047 111983047 C A FYN Missense_Mutation p.W503C 0.39 deleterious(0) probably_damaging(1) TCGA-78-7145-01 6 132874309 132874309 C T TAAR8 Missense_Mutation p.L160F 0.46 tolerated(0.12) benign(0.02) TCGA-78-7145-01 6 155465783 155465783 G T TIAM2 Missense_Mutation p.M558I 0.41 tolerated(1) benign(0.003) TCGA-78-7145-01 6 155465784 155465784 G T TIAM2 Missense_Mutation p.D559Y 0.41 deleterious(0) probably_damaging(0.948) TCGA-78-7145-01 6 157521999 157521999 C T ARID1B Missense_Mutation p.P1424L 0.11 possibly_damaging(0.559) TCGA-78-7145-01 6 43305681 43305681 C - ZNF318 Frame_Shift_Del p.D2019Ifs*11 0.32 TCGA-78-7145-01 6 50718983 50718983 C A TFAP2D Missense_Mutation p.S362Y 0.22 deleterious(0.04) probably_damaging(0.968) TCGA-78-7145-01 6 54805349 54805349 A G FAM83B Missense_Mutation p.E527G 0.25 deleterious(0) possibly_damaging(0.728) TCGA-78-7145-01 6 7569537 7569537 C A DSP Missense_Mutation p.P513H 0.51 probably_damaging(1) TCGA-78-7145-01 6 7580653 7580653 G A DSP Silent p.K1410K 0.44 TCGA-78-7145-01 6 80223222 80223222 G C LCA5 Missense_Mutation p.Q143E 0.08 deleterious(0.04) probably_damaging(0.959) TCGA-78-7145-01 6 80744812 80744812 G C TTK Missense_Mutation p.L575F 0.21 deleterious(0) probably_damaging(1) TCGA-78-7145-01 6 88853971 88853971 T - CNR1 Frame_Shift_Del p.A342Pfs*6 0.21 TCGA-78-7145-01 6 97063586 97063586 C T FHL5 Silent p.L265L 0.24 TCGA-78-7145-01 7 107746332 107746332 C A LAMB4 Missense_Mutation p.C267F 0.43 deleterious(0) probably_damaging(1) TCGA-78-7145-01 7 123152037 123152037 C A IQUB Nonsense_Mutation p.E120* 0.37 TCGA-78-7145-01 7 137092687 137092687 A T DGKI Missense_Mutation p.C960S 0.38 tolerated(0.4) possibly_damaging(0.622) TCGA-78-7145-01 7 142131873 142131873 C A TRBV5-6 Missense_Mutation p.G2V 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-78-7145-01 7 142651424 142651424 C A KEL Silent p.L257L 0.28 TCGA-78-7145-01 7 146997300 146997300 C T CNTNAP2 Silent p.L472L 0.17 TCGA-78-7145-01 7 150324854 150324854 C T GIMAP6 Missense_Mutation p.E278K 0.20 tolerated(0.26) benign(0.085) TCGA-78-7145-01 7 150647303 150647303 C A KCNH2 Missense_Mutation p.R784L 0.33 deleterious(0.01) probably_damaging(1) TCGA-78-7145-01 7 156450897 156450897 C A RNF32 Silent p.R176R 0.42 TCGA-78-7145-01 7 25163735 25163735 C G CYCS Missense_Mutation p.G2R 0.11 deleterious(0.01) possibly_damaging(0.863) TCGA-78-7145-01 7 77824308 77824308 G A MAGI2 Missense_Mutation p.P718S 0.35 deleterious(0.01) possibly_damaging(0.907) TCGA-78-7145-01 7 81593561 81593561 C A CACNA2D1 Missense_Mutation p.A897S 0.47 tolerated(0.59) benign(0.004) TCGA-78-7145-01 7 91632378 91632378 G - AKAP9 Frame_Shift_Del p.V1050Wfs*10 0.28 TCGA-78-7145-01 8 114326911 114326911 G C CSMD3 Missense_Mutation p.A97G 0.46 tolerated(0.09) benign(0.266) TCGA-78-7145-01 8 42587121 42587121 C A CHRNB3 Missense_Mutation p.T224K 0.36 deleterious(0) possibly_damaging(0.898) TCGA-78-7145-01 8 42611537 42611537 C T CHRNA6 Missense_Mutation p.G269S 0.38 deleterious(0) probably_damaging(1) TCGA-78-7145-01 8 73480446 73480446 G T KCNB2 Missense_Mutation p.M159I 0.40 tolerated(0.09) benign(0.003) TCGA-78-7145-01 8 75737310 75737310 G T PI15 Intron 0.31 TCGA-78-7145-01 8 75924769 75924769 G T CRISPLD1 Missense_Mutation p.L120F 0.43 deleterious(0) probably_damaging(0.931) TCGA-78-7145-01 9 113637828 113637828 C G LPAR1 Missense_Mutation p.R323T 0.68 deleterious(0.01) benign(0.01) TCGA-78-7145-01 9 133920910 133920910 G T LAMC3 Splice_Site p.X461_splice 0.25 TCGA-78-7145-01 9 32634632 32634632 C A TAF1L Missense_Mutation p.A316S 0.62 deleterious(0.02) possibly_damaging(0.867) TCGA-78-7145-01 9 43625652 43625652 C A SPATA31A6 Missense_Mutation p.G1012V 0.26 deleterious(0.01) benign(0.361) TCGA-78-7145-01 9 43627331 43627331 A T SPATA31A6 Missense_Mutation p.N452K 0.04 deleterious(0.01) possibly_damaging(0.568) TCGA-78-7145-01 9 71992567 71992567 G T FAM189A2 Missense_Mutation p.G134V 0.60 tolerated(0.12) benign(0.197) TCGA-78-7145-01 9 77403579 77403579 C A TRPM6 Missense_Mutation p.W873L 0.75 deleterious(0.03) probably_damaging(0.981) TCGA-78-7145-01 X 100667052 100667052 G T HNRNPH2 Nonsense_Mutation p.E26* 0.18 TCGA-78-7145-01 X 101971017 101971017 G C GPRASP2 Missense_Mutation p.C407S 0.34 tolerated(0.14) benign(0.091) TCGA-78-7145-01 X 103349839 103349839 C A SLC25A53 Silent p.G34G 0.14 TCGA-78-7145-01 X 10417375 10417375 T C MID1 3'UTR 0.37 TCGA-78-7145-01 X 118250553 118250553 G T KIAA1210 Missense_Mutation p.Q186K 0.26 tolerated(0.18) benign(0.222) TCGA-78-7145-01 X 128722933 128722933 T C OCRL Silent p.C804C 0.39 TCGA-78-7145-01 X 129155073 129155073 G A BCORL1 Silent p.P1185P 0.29 TCGA-78-7145-01 X 129185893 129185893 A T BCORL1 Missense_Mutation p.Q1585H 0.34 benign(0.019) TCGA-78-7145-01 X 130215645 130215645 T C ARHGAP36 Silent p.G2G 0.42 TCGA-78-7145-01 X 134654819 134654819 C T DDX26B 5'UTR 0.42 TCGA-78-7145-01 X 135095150 135095150 A G SLC9A6 Missense_Mutation p.T362A 0.35 deleterious(0.03) probably_damaging(0.997) TCGA-78-7145-01 X 13607713 13607713 C A EGFL6 Missense_Mutation p.P38H 0.28 deleterious(0) probably_damaging(0.957) TCGA-78-7145-01 X 13624535 13624535 C A EGFL6 Silent p.P186P 0.33 TCGA-78-7145-01 X 144904663 144904663 G A SLITRK2 Silent p.E240E 0.32 TCGA-78-7145-01 X 144905810 144905810 C G SLITRK2 Missense_Mutation p.L623V 0.40 deleterious(0) probably_damaging(0.998) TCGA-78-7145-01 X 148607432 148607432 C A IDS Intron 0.33 TCGA-78-7145-01 X 153409763 153409763 C G OPN1LW Silent p.A2A 0.29 TCGA-78-7145-01 X 20043197 20043197 C G MAP7D2 Missense_Mutation p.L428F 0.33 tolerated(0.1) probably_damaging(0.921) TCGA-78-7145-01 X 26213249 26213249 C - MAGEB6 3'UTR 0.29 TCGA-78-7145-01 X 30709269 30709269 G T GK Missense_Mutation p.V123F 0.34 deleterious(0) probably_damaging(0.988) TCGA-78-7145-01 X 30714174 30714174 G T GK Missense_Mutation p.V190F 0.17 deleterious(0.03) benign(0.182) TCGA-78-7145-01 X 32490369 32490369 C A DMD Missense_Mutation p.W954L 0.38 probably_damaging(0.979) TCGA-78-7145-01 X 35821063 35821063 C G MAGEB16 Missense_Mutation p.I250M 0.40 deleterious(0) probably_damaging(0.991) TCGA-78-7145-01 X 38146127 38146127 C A RPGR Nonsense_Mutation p.E709* 0.34 TCGA-78-7145-01 X 38268137 38268137 C A OTC Silent p.T242T 0.23 TCGA-78-7145-01 X 48652212 48652212 C A GATA1 Missense_Mutation p.L295M 0.29 deleterious(0.02) probably_damaging(0.996) TCGA-78-7145-01 X 50111917 50111917 G C DGKK RNA 0.32 TCGA-78-7145-01 X 54818409 54818409 G T ITIH6 Silent p.I106I 0.32 TCGA-78-7145-01 X 63410547 63410547 C A AMER1 Nonsense_Mutation p.G874* 0.34 TCGA-78-7145-01 X 63569937 63569937 T C MTMR8 Missense_Mutation p.Y161C 0.32 deleterious(0.01) probably_damaging(1) TCGA-78-7145-01 X 70618499 70618499 G T TAF1 Missense_Mutation p.R1253M 0.23 deleterious(0) probably_damaging(0.997) TCGA-78-7145-01 X 7177623 7177623 G A STS Missense_Mutation p.V211M 0.19 deleterious(0.02) probably_damaging(0.955) TCGA-78-7146-01 10 106039209 106039209 G T GSTO2 Nonsense_Mutation p.E150* 0.78 TCGA-78-7146-01 10 124742257 124742257 A T PSTK Missense_Mutation p.Q75H 0.45 tolerated(0.11) benign(0.023) TCGA-78-7146-01 10 131639127 131639127 G T EBF3 Silent p.S505S 0.42 TCGA-78-7146-01 10 13481453 13481453 C A BEND7 Missense_Mutation p.A376S 0.57 tolerated_low_confidence(0.14) benign(0.001) TCGA-78-7146-01 10 135209735 135209735 C T RP11-108K14.8 Silent p.L87L 0.49 TCGA-78-7146-01 10 26305776 26305776 G T MYO3A Missense_Mutation p.R179L 0.17 tolerated(0.35) benign(0.069) TCGA-78-7146-01 10 31799672 31799672 C A ZEB1 Missense_Mutation p.L186M 0.12 deleterious(0) probably_damaging(0.999) TCGA-78-7146-01 10 38407471 38407471 G C ZNF37A Missense_Mutation p.E464D 0.17 deleterious(0.01) possibly_damaging(0.889) TCGA-78-7146-01 10 43596062 43596062 C T RET Missense_Mutation p.R77C 0.23 deleterious_low_confidence(0.04) possibly_damaging(0.751) TCGA-78-7146-01 10 50594830 50594830 C A DRGX Missense_Mutation p.K108N 0.35 tolerated(0.08) benign(0.04) TCGA-78-7146-01 10 5567249 5567249 C T CALML3 Silent p.P67P 0.21 TCGA-78-7146-01 10 55912898 55912898 C A PCDH15 Silent p.T582T 0.41 TCGA-78-7146-01 10 68857414 68857414 C G LRRTM3 Missense_Mutation p.H536D 0.77 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-78-7146-01 10 73551076 73551076 A G CDH23 5'Flank 0.18 TCGA-78-7146-01 10 7841071 7841071 G C ATP5C1 Missense_Mutation p.M114I 0.32 tolerated(1) benign(0.002) TCGA-78-7146-01 10 92617025 92617025 A T HTR7 Missense_Mutation p.M135K 0.12 deleterious(0) probably_damaging(0.944) TCGA-78-7146-01 10 99667803 99667803 C T CRTAC1 Missense_Mutation p.D273N 0.12 tolerated(0.22) benign(0.218) TCGA-78-7146-01 11 100170065 100170065 G A CNTN5 Missense_Mutation p.V853I 0.26 deleterious(0.02) probably_damaging(0.956) TCGA-78-7146-01 11 102480641 102480641 G T MMP20 Missense_Mutation p.T215K 0.23 tolerated(0.34) benign(0.003) TCGA-78-7146-01 11 103157037 103157037 G T DYNC2H1 Missense_Mutation p.W3655C 0.23 probably_damaging(1) TCGA-78-7146-01 11 105775936 105775936 G T GRIA4 Missense_Mutation p.G356V 0.25 deleterious(0) probably_damaging(0.999) TCGA-78-7146-01 11 114401616 114401616 T C NXPE1 5'UTR 0.31 TCGA-78-7146-01 11 1266462 1266462 C A MUC5B Silent p.I2784I 0.13 TCGA-78-7146-01 11 20959343 20959343 T A NELL1 Missense_Mutation p.Y337N 0.44 deleterious(0.01) probably_damaging(0.929) TCGA-78-7146-01 11 22294412 22294412 G T ANO5 Missense_Mutation p.E704D 0.52 deleterious(0) benign(0.312) TCGA-78-7146-01 11 26620502 26620502 A G ANO3 Missense_Mutation p.K543R 0.23 tolerated(0.34) probably_damaging(0.999) TCGA-78-7146-01 11 34144053 34144053 G A NAT10 Silent p.L276L 0.25 TCGA-78-7146-01 11 4842711 4842711 A T OR51F2 Silent p.P32P 0.17 TCGA-78-7146-01 11 49805563 49805563 A T RP11-707M1.1 RNA 0.23 TCGA-78-7146-01 11 51516107 51516107 A T OR4C46 Missense_Mutation p.I276L 0.27 tolerated_low_confidence(0.23) benign(0.12) TCGA-78-7146-01 11 5221342 5221342 C G OR51V1 Missense_Mutation p.A197P 0.32 deleterious(0) probably_damaging(0.984) TCGA-78-7146-01 11 5444362 5444362 T A OR51Q1 Missense_Mutation p.L311H 0.39 tolerated(0.55) benign(0) TCGA-78-7146-01 11 55065710 55065710 T C TRIM51HP RNA 0.15 TCGA-78-7146-01 11 55322128 55322128 T A OR4C15 Missense_Mutation p.L116M 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-78-7146-01 11 55595344 55595344 C A OR5L2 Missense_Mutation p.S217Y 0.31 deleterious(0) probably_damaging(1) TCGA-78-7146-01 11 55872786 55872786 A T OR8H2 Missense_Mutation p.N90Y 0.43 deleterious(0) benign(0.021) TCGA-78-7146-01 11 60108305 60108305 T C MS4A6E 3'UTR 0.62 TCGA-78-7146-01 11 62285472 62285472 C T AHNAK Missense_Mutation p.G5473S 0.29 probably_damaging(0.985) TCGA-78-7146-01 11 6422619 6422619 C A APBB1 Missense_Mutation p.G513V 0.11 deleterious(0.02) probably_damaging(0.984) TCGA-78-7146-01 11 6891224 6891224 C T OR10A2 Missense_Mutation p.S80F 0.37 deleterious(0) benign(0.078) TCGA-78-7146-01 11 7063773 7063773 C G NLRP14 Silent p.T172T 0.41 TCGA-78-7146-01 11 73760518 73760518 C G C2CD3 Missense_Mutation p.C1742S 0.43 deleterious(0.03) possibly_damaging(0.784) TCGA-78-7146-01 11 75146633 75146633 A G GDPD5 Silent p.Y579Y 0.46 TCGA-78-7146-01 11 7818472 7818472 G A OR5P2 Silent p.D6D 0.11 TCGA-78-7146-01 11 93808443 93808443 G T HEPHL1 Silent p.L536L 0.40 TCGA-78-7146-01 11 94230284 94230284 G T ANKRD49 Intron 0.44 TCGA-78-7146-01 11 94230285 94230285 G T ANKRD49 Intron 0.44 TCGA-78-7146-01 11 94308235 94308235 C G PIWIL4 Missense_Mutation p.D79E 0.39 deleterious(0.04) benign(0.004) TCGA-78-7146-01 12 100491164 100491164 G A UHRF1BP1L Silent p.I216I 0.35 TCGA-78-7146-01 12 102008303 102008303 C A MYBPC1 Missense_Mutation p.P19T 0.35 deleterious(0.03) probably_damaging(0.932) TCGA-78-7146-01 12 1036308 1036308 C G RAD52 Intron 0.32 TCGA-78-7146-01 12 112103546 112103546 T C BRAP Missense_Mutation p.T265A 0.42 tolerated(0.3) benign(0.11) TCGA-78-7146-01 12 113445702 113445702 G C OAS2 Missense_Mutation p.D617H 0.29 tolerated(0.07) probably_damaging(0.988) TCGA-78-7146-01 12 176425 176425 G T IQSEC3 Missense_Mutation p.R126L 0.11 tolerated_low_confidence(0.4) benign(0.003) TCGA-78-7146-01 12 20766419 20766419 G A PDE3A Missense_Mutation p.E352K 0.21 deleterious(0) probably_damaging(0.999) TCGA-78-7146-01 12 21636379 21636379 T A RECQL Missense_Mutation p.R211W 0.42 deleterious(0) possibly_damaging(0.551) TCGA-78-7146-01 12 25256954 25256954 G C LRMP Missense_Mutation p.M336I 0.14 tolerated(0.31) benign(0.011) TCGA-78-7146-01 12 2797755 2797755 G T CACNA1C Missense_Mutation p.G2024V 0.41 tolerated_low_confidence(0.23) benign(0.07) TCGA-78-7146-01 12 29498439 29498439 C A ERGIC2 Silent p.V254V 0.21 TCGA-78-7146-01 12 32764101 32764101 G A FGD4 Missense_Mutation p.E408K 0.21 deleterious(0) possibly_damaging(0.667) TCGA-78-7146-01 12 44196223 44196223 C A TWF1 Missense_Mutation p.D50Y 0.39 deleterious(0) possibly_damaging(0.564) TCGA-78-7146-01 12 49445926 49445926 G A KMT2D Missense_Mutation p.P514S 0.20 unknown(0) TCGA-78-7146-01 12 51488874 51488874 G C TFCP2 3'UTR 0.33 TCGA-78-7146-01 12 63042377 63042377 C A PPM1H Silent p.R479R 0.25 TCGA-78-7146-01 12 66911695 66911695 T A GRIP1 Silent p.G188G 0.26 TCGA-78-7146-01 12 67072701 67072701 C G GRIP1 5'UTR 0.28 TCGA-78-7146-01 12 6806462 6806462 G T PIANP Missense_Mutation p.R172S 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.555) TCGA-78-7146-01 12 6933468 6933468 T G GPR162 Missense_Mutation p.L135R 0.22 tolerated(0.07) probably_damaging(0.972) TCGA-78-7146-01 12 75737656 75737656 G A GLIPR1L1 Missense_Mutation p.E120K 0.58 deleterious(0) probably_damaging(0.999) TCGA-78-7146-01 12 78571438 78571438 G T NAV3 Intron 0.45 TCGA-78-7146-01 12 7947641 7947641 A T NANOG Missense_Mutation p.M290L 0.10 tolerated(0.8) benign(0.001) TCGA-78-7146-01 12 97078969 97078969 C A C12orf55 Silent p.G1989G 0.22 TCGA-78-7146-01 13 100622427 100622427 G C ZIC5 Silent p.V501V 0.23 TCGA-78-7146-01 13 107165024 107165024 C A EFNB2 Missense_Mutation p.D87Y 0.33 deleterious(0) probably_damaging(0.925) TCGA-78-7146-01 13 114472084 114472084 C A TMEM255B Missense_Mutation p.S68Y 0.34 deleterious(0.01) probably_damaging(0.982) TCGA-78-7146-01 13 114514710 114514710 C T TMEM255B Missense_Mutation p.P272L 0.52 tolerated(0.69) benign(0.022) TCGA-78-7146-01 13 115090647 115090647 G T CHAMP1 Missense_Mutation p.G444W 0.30 tolerated(0.13) probably_damaging(0.997) TCGA-78-7146-01 13 21956072 21956072 C G ZDHHC20 Intron 0.58 TCGA-78-7146-01 13 33281085 33281085 A T PDS5B Missense_Mutation p.Q624L 0.40 tolerated(1) benign(0.001) TCGA-78-7146-01 13 48985870 48985870 C G LPAR6 Missense_Mutation p.M230I 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-78-7146-01 13 70293595 70293595 C A KLHL1 Nonsense_Mutation p.G641* 0.28 TCGA-78-7146-01 13 84455273 84455273 G T SLITRK1 Missense_Mutation p.Q124K 0.24 deleterious(0.01) benign(0.132) TCGA-78-7146-01 13 95818455 95818455 G C ABCC4 Missense_Mutation p.S664C 0.30 deleterious(0.03) benign(0.198) TCGA-78-7146-01 14 20586261 20586261 C T OR4K17 Silent p.A232A 0.28 TCGA-78-7146-01 14 24551994 24551994 C G NRL Missense_Mutation p.E22Q 0.27 deleterious(0.01) probably_damaging(0.946) TCGA-78-7146-01 14 31613401 31613401 T C HECTD1 Silent p.V898V 0.25 TCGA-78-7146-01 14 34400412 34400412 C A EGLN3 Missense_Mutation p.A123S 0.22 deleterious(0.03) probably_damaging(0.96) TCGA-78-7146-01 14 36104678 36104678 T C RALGAPA1 Missense_Mutation p.I1429V 0.17 tolerated(0.41) benign(0.008) TCGA-78-7146-01 14 51233537 51233537 G A NIN Silent p.N502N 0.24 TCGA-78-7146-01 14 58863044 58863044 G A TOMM20L Silent p.E55E 0.27 TCGA-78-7146-01 14 70633580 70633580 T C SLC8A3 Silent p.T520T 0.43 TCGA-78-7146-01 14 77978644 77978644 C G SPTLC2 Missense_Mutation p.E558Q 0.39 deleterious_low_confidence(0.03) probably_damaging(0.911) TCGA-78-7146-01 14 81744458 81744458 T C STON2 Silent p.A399A 0.31 TCGA-78-7146-01 14 88945335 88945335 G A PTPN21 Silent p.L814L 0.13 TCGA-78-7146-01 14 95107961 95107961 C A SERPINA13P RNA 0.42 TCGA-78-7146-01 14 99723967 99723967 C T BCL11B Missense_Mutation p.D90N 0.36 deleterious(0.01) benign(0.001) TCGA-78-7146-01 15 25423957 25423957 G T SNORD115-5 RNA 0.29 TCGA-78-7146-01 15 27128317 27128317 C T GABRA5 Silent p.R71R 0.31 TCGA-78-7146-01 15 28195693 28195693 G C OCA2 Intron 0.24 TCGA-78-7146-01 15 34105703 34105703 G T RYR3 Missense_Mutation p.W3475C 0.34 possibly_damaging(0.88) TCGA-78-7146-01 15 34638205 34638205 G T NUTM1 5'UTR 0.34 TCGA-78-7146-01 15 52901305 52901305 C T FAM214A Silent p.Q602Q 0.39 TCGA-78-7146-01 15 52901391 52901391 C G FAM214A Missense_Mutation p.E574Q 0.32 tolerated(0.54) benign(0.09) TCGA-78-7146-01 15 73415063 73415063 G T NEO1 Missense_Mutation p.G216C 0.70 deleterious(0.01) possibly_damaging(0.759) TCGA-78-7146-01 15 88669506 88669506 C T NTRK3 Missense_Mutation p.M464I 0.29 tolerated(1) benign(0.006) TCGA-78-7146-01 15 92977600 92977600 G T ST8SIA2 Missense_Mutation p.R95S 0.80 benign(0.01) TCGA-78-7146-01 16 12009767 12009767 G A GSPT1 5'UTR 0.18 TCGA-78-7146-01 16 15045679 15045679 G C NPIPA1 Missense_Mutation p.D284H 0.13 deleterious(0) probably_damaging(0.961) TCGA-78-7146-01 16 19548034 19548034 T C CCP110 Missense_Mutation p.V348A 0.16 tolerated(0.21) benign(0.142) TCGA-78-7146-01 16 20996594 20996594 G A DNAH3 Silent p.L2490L 0.19 TCGA-78-7146-01 16 20996821 20996821 G T DNAH3 Missense_Mutation p.H2415N 0.45 deleterious(0) probably_damaging(0.99) TCGA-78-7146-01 16 21073803 21073803 C A DNAH3 Missense_Mutation p.K1240N 0.34 deleterious(0.05) benign(0.077) TCGA-78-7146-01 16 22563720 22563720 C T RP11-368J21.3 RNA 0.13 TCGA-78-7146-01 16 23093869 23093869 C A USP31 Missense_Mutation p.D614Y 0.50 deleterious(0) probably_damaging(0.999) TCGA-78-7146-01 16 23706081 23706081 C T ERN2 Missense_Mutation p.E738K 0.38 deleterious(0) probably_damaging(0.995) TCGA-78-7146-01 16 23768583 23768583 G A CHP2 Missense_Mutation p.R159H 0.29 deleterious(0) probably_damaging(0.954) TCGA-78-7146-01 16 25264296 25264296 T A ZKSCAN2 Missense_Mutation p.T217S 0.21 tolerated(0.14) benign(0.13) TCGA-78-7146-01 16 27802705 27802705 C T GSG1L Missense_Mutation p.G328R 0.42 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-78-7146-01 16 28970178 28970178 C T NFATC2IP Silent p.I329I 0.20 TCGA-78-7146-01 16 29821378 29821378 G A MAZ Intron 0.27 TCGA-78-7146-01 16 30785443 30785443 A G RNF40 3'UTR 0.17 TCGA-78-7146-01 16 31435842 31435842 G T ITGAD Missense_Mutation p.G1106C 0.41 deleterious(0) probably_damaging(0.993) TCGA-78-7146-01 16 3306354 3306354 G T MEFV Missense_Mutation p.N78K 0.51 deleterious(0) probably_damaging(1) TCGA-78-7146-01 16 4308067 4308067 C G TFAP4 Missense_Mutation p.E336Q 0.25 tolerated_low_confidence(0.2) unknown(0) TCGA-78-7146-01 16 50815257 50815257 G T CYLD Missense_Mutation p.R540M 0.27 deleterious(0) probably_damaging(0.999) TCGA-78-7146-01 16 57954428 57954428 G A CNGB1 Missense_Mutation p.S555F 0.31 deleterious(0) probably_damaging(0.993) TCGA-78-7146-01 16 75665656 75665656 C A KARS Missense_Mutation p.C366F 0.31 deleterious(0) probably_damaging(0.994) TCGA-78-7146-01 16 81061790 81061790 C T CENPN Silent p.F275F 0.18 TCGA-78-7146-01 16 81134842 81134842 G C GCSH 5'Flank 0.18 TCGA-78-7146-01 16 920844 920844 C T LMF1 Missense_Mutation p.V373I 0.18 tolerated(0.71) benign(0.006) TCGA-78-7146-01 17 16342605 16342605 C T TRPV2 3'Flank 0.39 TCGA-78-7146-01 17 18138449 18138449 G T LLGL1 Silent p.L369L 0.70 TCGA-78-7146-01 17 18918509 18918509 G C SLC5A10 Missense_Mutation p.G429A 0.50 deleterious(0.02) benign(0.278) TCGA-78-7146-01 17 21201777 21201777 C A MAP2K3 Silent p.P34P 0.29 TCGA-78-7146-01 17 27014370 27014370 A G SUPT6H Missense_Mutation p.I963V 0.32 tolerated(0.45) benign(0.034) TCGA-78-7146-01 17 27371935 27371935 C T PIPOX Missense_Mutation p.A58V 0.32 deleterious(0.05) benign(0.414) TCGA-78-7146-01 17 29654858 29654858 G T NF1 Splice_Site p.X1870_splice 0.62 TCGA-78-7146-01 17 34958158 34958158 G A MRM1 5'UTR 0.30 TCGA-78-7146-01 17 37762784 37762784 G T NEUROD2 Missense_Mutation p.D23E 0.36 tolerated_low_confidence(0.45) benign(0.001) TCGA-78-7146-01 17 39122876 39122876 G C KRT39 Missense_Mutation p.A78G 0.17 tolerated(0.44) benign(0.001) TCGA-78-7146-01 17 3980197 3980197 A C ZZEF1 Missense_Mutation p.C1026G 0.62 tolerated(0.61) benign(0.002) TCGA-78-7146-01 17 39881304 39881304 C T HAP1 Silent p.T503T 0.24 TCGA-78-7146-01 17 40125781 40125781 C T CNP Missense_Mutation p.R369W 0.11 tolerated(0.07) probably_damaging(0.986) TCGA-78-7146-01 17 42851877 42851877 G A ADAM11 Silent p.A365A 0.26 TCGA-78-7146-01 17 45915599 45915599 C G SCRN2 Intron 0.28 TCGA-78-7146-01 17 53218670 53218670 G C STXBP4 Splice_Site p.X497_splice 0.41 TCGA-78-7146-01 17 53218706 53218706 G A STXBP4 Missense_Mutation p.D509N 0.39 deleterious(0) probably_damaging(0.951) TCGA-78-7146-01 17 53218710 53218710 G A STXBP4 Missense_Mutation p.G510E 0.40 deleterious(0) probably_damaging(1) TCGA-78-7146-01 17 5463043 5463043 G - NLRP1 Frame_Shift_Del p.Q325Kfs*5 0.40 TCGA-78-7146-01 17 57721648 57721648 G C CLTC Silent p.L18L 0.16 TCGA-78-7146-01 17 61489411 61489411 G A TANC2 Missense_Mutation p.G1199E 0.14 deleterious(0) possibly_damaging(0.739) TCGA-78-7146-01 17 61562265 61562265 C T ACE Intron 0.21 TCGA-78-7146-01 17 61562273 61562273 C T ACE Intron 0.18 TCGA-78-7146-01 17 61562274 61562274 C T ACE Intron 0.18 TCGA-78-7146-01 17 61949552 61949552 C A CSH2 Missense_Mutation p.M196I 0.82 deleterious(0.03) probably_damaging(0.993) TCGA-78-7146-01 17 61957720 61957720 G C GH2 3'UTR 0.20 TCGA-78-7146-01 17 65110479 65110479 C T HELZ Silent p.K1293K 0.12 TCGA-78-7146-01 17 65110490 65110490 C T HELZ Missense_Mutation p.E1290K 0.12 deleterious_low_confidence(0) benign(0.184) TCGA-78-7146-01 17 66537066 66537066 C T FAM20A Silent p.V381V 0.11 TCGA-78-7146-01 17 67152975 67152975 G A ABCA10 Silent p.F1151F 0.14 TCGA-78-7146-01 17 67153032 67153032 G A ABCA10 Silent p.V1132V 0.13 TCGA-78-7146-01 17 67153055 67153055 G C ABCA10 Missense_Mutation p.Q1125E 0.10 deleterious(0) possibly_damaging(0.689) TCGA-78-7146-01 17 67218773 67218773 C T ABCA10 Missense_Mutation p.E34K 0.26 deleterious(0.03) possibly_damaging(0.589) TCGA-78-7146-01 17 72588734 72588734 C A C17orf77 Nonsense_Mutation p.C183* 0.56 TCGA-78-7146-01 17 7577532 7577532 G A TP53 Missense_Mutation p.P250L 0.66 deleterious(0) probably_damaging(1) TCGA-78-7146-01 17 76557934 76557934 C T DNAH17 Silent p.Q566Q 0.50 TCGA-78-7146-01 17 76562785 76562785 C T DNAH17 Missense_Mutation p.E494K 0.21 benign(0.002) TCGA-78-7146-01 17 78013719 78013719 G A CCDC40 Missense_Mutation p.E68K 0.27 tolerated_low_confidence(0.24) benign(0.024) TCGA-78-7146-01 17 8725198 8725198 C G PIK3R6 Silent p.L614L 0.27 TCGA-78-7146-01 17 9546594 9546594 C T WDR16 3'UTR 0.47 TCGA-78-7146-01 18 14132380 14132380 G A ZNF519 5'UTR 0.20 TCGA-78-7146-01 18 29055707 29055707 G T DSG3 Silent p.V828V 0.42 TCGA-78-7146-01 18 52546622 52546622 A T RAB27B Missense_Mutation p.N59I 0.58 deleterious(0) benign(0.355) TCGA-78-7146-01 18 70502528 70502528 A T NETO1 Intron 0.42 TCGA-78-7146-01 18 8819028 8819028 G T SOGA2 Missense_Mutation p.R976L 0.63 tolerated(0.19) benign(0.024) TCGA-78-7146-01 19 1059036 1059036 G C ABCA7 Missense_Mutation p.Q1805H 0.23 tolerated(0.12) benign(0.18) TCGA-78-7146-01 19 10600380 10600380 G - KEAP1 Frame_Shift_Del p.P492Qfs*8 0.34 TCGA-78-7146-01 19 11233888 11233888 G A LDLR Missense_Mutation p.V727I 0.24 tolerated(0.37) benign(0.002) TCGA-78-7146-01 19 12817069 12817069 T A TNPO2 Missense_Mutation p.I537F 0.55 deleterious(0) possibly_damaging(0.809) TCGA-78-7146-01 19 1979753 1979753 G A CSNK1G2 Silent p.P335P 0.35 TCGA-78-7146-01 19 35990868 35990868 G C DMKN Missense_Mutation p.P451A 0.25 tolerated(0.09) unknown(0) TCGA-78-7146-01 19 40367800 40367800 T C FCGBP Missense_Mutation p.E4387G 0.19 probably_damaging(0.999) TCGA-78-7146-01 19 40745982 40745982 G A AKT2 Silent p.V203V 0.26 TCGA-78-7146-01 19 50375081 50375081 C T AKT1S1 Missense_Mutation p.E169K 0.25 deleterious(0.01) probably_damaging(0.988) TCGA-78-7146-01 19 51274107 51274107 C G GPR32 Missense_Mutation p.L84V 0.26 deleterious(0) probably_damaging(1) TCGA-78-7146-01 19 55494005 55494005 G C NLRP2 Silent p.P313P 0.55 TCGA-78-7146-01 19 55497540 55497540 T A NLRP2 Silent p.A741A 0.39 TCGA-78-7146-01 19 56736283 56736283 C T ZSCAN5A Missense_Mutation p.V45M 0.30 tolerated(0.21) benign(0.054) TCGA-78-7146-01 1 101190444 101190444 A T VCAM1 Missense_Mutation p.Q309L 0.48 deleterious(0.03) benign(0.027) TCGA-78-7146-01 1 113615871 113615871 C G LRIG2 5'UTR 0.22 TCGA-78-7146-01 1 1277490 1277490 T A DVL1 Missense_Mutation p.T137S 0.27 tolerated(0.24) benign(0.186) TCGA-78-7146-01 1 142713251 142713251 C A RP11-417J8.6 RNA 0.19 TCGA-78-7146-01 1 150131394 150131394 G A PLEKHO1 Silent p.P302P 0.21 TCGA-78-7146-01 1 151158033 151158033 G A VPS72 Nonsense_Mutation p.R112* 0.69 TCGA-78-7146-01 1 152129178 152129178 G A RPTN Missense_Mutation p.H133Y 0.11 deleterious(0.01) possibly_damaging(0.783) TCGA-78-7146-01 1 154990976 154990976 G C ZBTB7B 3'Flank 0.58 TCGA-78-7146-01 1 155205005 155205005 C T GBA Missense_Mutation p.V496I 0.07 deleterious(0.02) benign(0.438) TCGA-78-7146-01 1 155932975 155932975 C T ARHGEF2 Splice_Site p.X242_splice 0.10 TCGA-78-7146-01 1 159002362 159002362 C G IFI16 Missense_Mutation p.L404V 0.20 tolerated(0.59) benign(0.031) TCGA-78-7146-01 1 15987580 15987580 C T RSC1A1 Missense_Mutation p.T406I 0.35 tolerated(0.11) benign(0.424) TCGA-78-7146-01 1 161494985 161494985 G C HSPA6 Silent p.T179T 0.09 TCGA-78-7146-01 1 161967966 161967966 G C OLFML2B Missense_Mutation p.L375V 0.10 tolerated(0.63) benign(0) TCGA-78-7146-01 1 162344230 162344230 C A C1orf111 Nonsense_Mutation p.E132* 0.13 TCGA-78-7146-01 1 169890871 169890871 G T KIFAP3 Silent p.A775A 0.21 TCGA-78-7146-01 1 170927673 170927673 G C MROH9 Silent p.V48V 0.24 TCGA-78-7146-01 1 175086162 175086162 A G TNN Missense_Mutation p.D736G 0.34 deleterious(0) probably_damaging(0.956) TCGA-78-7146-01 1 17742997 17742997 C A RCC2 Silent p.V335V 0.32 TCGA-78-7146-01 1 179460779 179460779 G T AXDND1 Missense_Mutation p.S733I 0.50 tolerated(0.15) benign(0.047) TCGA-78-7146-01 1 186915861 186915861 A T PLA2G4A Missense_Mutation p.T376S 0.28 tolerated(0.74) benign(0.008) TCGA-78-7146-01 1 186915862 186915862 C A PLA2G4A Missense_Mutation p.T376K 0.26 tolerated(0.99) benign(0.005) TCGA-78-7146-01 1 200974783 200974783 G T KIF21B Missense_Mutation p.R163S 0.25 deleterious(0) probably_damaging(0.992) TCGA-78-7146-01 1 205633714 205633714 A T SLC45A3 Missense_Mutation p.L24Q 0.28 deleterious(0) possibly_damaging(0.9) TCGA-78-7146-01 1 215848193 215848193 C A USH2A Missense_Mutation p.A4354S 0.24 benign(0.216) TCGA-78-7146-01 1 22336215 22336215 C A CELA3A Silent p.P220P 0.86 TCGA-78-7146-01 1 226019484 226019485 - A EPHX1 Frame_Shift_Ins p.H64Tfs*6 0.22 TCGA-78-7146-01 1 236727928 236727928 C A HEATR1 Missense_Mutation p.S1490I 0.29 deleterious(0.03) benign(0.005) TCGA-78-7146-01 1 247769570 247769570 T C OR2G3 Missense_Mutation p.I228T 0.37 deleterious(0.02) benign(0.303) TCGA-78-7146-01 1 247901950 247901950 C A OR14K1 Missense_Mutation p.L12I 0.34 deleterious(0) probably_damaging(0.993) TCGA-78-7146-01 1 34015790 34015792 GAG AA CSMD2 Frame_Shift_Del p.L2824Ffs*33 0.22 TCGA-78-7146-01 1 35222995 35222995 C A GJB5 Missense_Mutation p.R22S 0.18 deleterious(0) probably_damaging(1) TCGA-78-7146-01 1 35226994 35226994 G A GJB4 Missense_Mutation p.E47K 0.32 deleterious(0.01) probably_damaging(0.994) TCGA-78-7146-01 1 38079472 38079472 G T RSPO1 Missense_Mutation p.R177S 0.35 deleterious(0) probably_damaging(0.999) TCGA-78-7146-01 1 40434040 40434040 C T MFSD2A Silent p.L428L 0.41 TCGA-78-7146-01 1 47746501 47746501 A G STIL Silent p.A543A 0.27 TCGA-78-7146-01 1 50574776 50574776 A T ELAVL4 Intron 0.55 TCGA-78-7146-01 1 67561944 67561944 C G C1orf141 Missense_Mutation p.R136T 0.22 tolerated(0.65) possibly_damaging(0.765) TCGA-78-7146-01 1 71418726 71418726 T A PTGER3 Missense_Mutation p.Q374L 0.36 deleterious(0.05) benign(0.001) TCGA-78-7146-01 1 75037631 75037631 C G C1orf173 Missense_Mutation p.E1255Q 0.29 tolerated(0.11) benign(0.066) TCGA-78-7146-01 1 91784675 91784675 C A HFM1 Missense_Mutation p.W924C 0.36 deleterious(0) probably_damaging(1) TCGA-78-7146-01 1 99772038 99772038 C A LPPR4 Silent p.V588V 0.32 TCGA-78-7146-01 20 29632621 29632621 C T FRG1B Nonsense_Mutation p.Q146* 0.05 TCGA-78-7146-01 20 30584711 30584711 G A XKR7 Silent p.A397A 0.19 TCGA-78-7146-01 20 30898135 30898135 G A KIF3B Silent p.K185K 0.38 TCGA-78-7146-01 20 33891826 33891826 C A UQCC1 Missense_Mutation p.G271V 0.29 deleterious(0.02) probably_damaging(1) TCGA-78-7146-01 20 3765998 3765998 G C CENPB Missense_Mutation p.S378W 0.31 deleterious(0) unknown(0) TCGA-78-7146-01 20 44751319 44751319 G A CD40 Nonsense_Mutation p.W109* 0.33 TCGA-78-7146-01 20 50408136 50408136 G A SALL4 Missense_Mutation p.H296Y 0.62 deleterious(0.01) probably_damaging(0.993) TCGA-78-7146-01 20 51870214 51870214 C G TSHZ2 Missense_Mutation p.H73D 0.28 tolerated(0.62) possibly_damaging(0.731) TCGA-78-7146-01 21 19628834 19628834 G T CHODL Missense_Mutation p.V30L 0.34 tolerated(0.05) benign(0.17) TCGA-78-7146-01 21 31965029 31965029 C A KRTAP6-3 Missense_Mutation p.H82N 0.20 unknown(0) TCGA-78-7146-01 21 31965031 31965031 C A KRTAP6-3 Missense_Mutation p.H82Q 0.21 unknown(0) TCGA-78-7146-01 21 45712930 45712930 C G AIRE Missense_Mutation p.P384A 0.59 tolerated(0.51) benign(0.118) TCGA-78-7146-01 22 16287413 16287413 C - POTEH Frame_Shift_Del p.G158Efs*46 0.11 TCGA-78-7146-01 22 24087275 24087275 C A ZNF70 Missense_Mutation p.R18M 0.30 tolerated(0.12) benign(0.169) TCGA-78-7146-01 22 36661519 36661519 G C APOL1 Missense_Mutation p.E229Q 0.27 deleterious(0) benign(0.009) TCGA-78-7146-01 22 36662156 36662156 G C APOL1 3'UTR 0.30 TCGA-78-7146-01 22 43435841 43435841 C A TTLL1 Missense_Mutation p.G405W 0.31 deleterious_low_confidence(0) possibly_damaging(0.599) TCGA-78-7146-01 22 43901455 43901455 C A MPPED1 Missense_Mutation p.P314T 0.44 tolerated(0.07) benign(0.069) TCGA-78-7146-01 2 105924776 105924776 C G TGFBRAP1 Splice_Site 0.15 TCGA-78-7146-01 2 108487161 108487161 G T RGPD4 Missense_Mutation p.G901C 0.31 deleterious(0.01) possibly_damaging(0.711) TCGA-78-7146-01 2 113317097 113317097 G T POLR1B Missense_Mutation p.V520F 0.50 deleterious(0) probably_damaging(0.931) TCGA-78-7146-01 2 113999249 113999249 G T PAX8 Missense_Mutation p.P219H 0.20 tolerated(0.1) benign(0.219) TCGA-78-7146-01 2 114257308 114257308 C A FOXD4L1 Missense_Mutation p.L159I 0.21 deleterious(0) probably_damaging(0.999) TCGA-78-7146-01 2 130911005 130911005 T A SMPD4 Missense_Mutation p.R677W 0.58 tolerated(0.07) probably_damaging(0.974) TCGA-78-7146-01 2 130911017 130911017 C T SMPD4 Missense_Mutation p.E673K 0.12 tolerated(0.47) benign(0.011) TCGA-78-7146-01 2 132236883 132236883 G A TUBA3D Missense_Mutation p.E77K 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.507) TCGA-78-7146-01 2 133014549 133014549 G C MIR663B RNA 0.11 TCGA-78-7146-01 2 136575099 136575099 G T LCT Missense_Mutation p.H507N 0.14 tolerated(0.29) benign(0.009) TCGA-78-7146-01 2 136575399 136575399 C A LCT Missense_Mutation p.G407W 0.44 deleterious(0) probably_damaging(1) TCGA-78-7146-01 2 138330082 138330082 G A THSD7B Missense_Mutation p.E1130K 0.16 deleterious(0) unknown(0) TCGA-78-7146-01 2 14774244 14774244 C A FAM84A Silent p.R47R 0.29 TCGA-78-7146-01 2 15555714 15555714 C A NBAS Missense_Mutation p.D965Y 0.40 deleterious(0) possibly_damaging(0.894) TCGA-78-7146-01 2 160605020 160605020 G C MARCH7 Missense_Mutation p.D407H 0.22 deleterious(0) probably_damaging(0.999) TCGA-78-7146-01 2 1651960 1651960 G A PXDN Missense_Mutation p.R1198W 0.25 deleterious(0) probably_damaging(0.999) TCGA-78-7146-01 2 169783822 169783840 TGAGCGGAGGAACTGGACA - ABCB11 Frame_Shift_Del p.N1148Kfs*17 0.23 TCGA-78-7146-01 2 175779863 175779863 C A CHN1 Missense_Mutation p.Q61H 0.28 tolerated(0.13) possibly_damaging(0.671) TCGA-78-7146-01 2 176803080 176803080 G T KIAA1715 Missense_Mutation p.H282N 0.16 deleterious(0) probably_damaging(0.974) TCGA-78-7146-01 2 179453672 179453672 C T TTN Missense_Mutation p.R20927H 0.24 TCGA-78-7146-01 2 179606343 179606343 C T TTN Missense_Mutation p.D3873N 0.26 TCGA-78-7146-01 2 182322407 182322407 C A ITGA4 Missense_Mutation p.P9H 0.53 deleterious_low_confidence(0.03) benign(0.184) TCGA-78-7146-01 2 19553371 19553371 G A OSR1 Missense_Mutation p.R66C 0.19 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-78-7146-01 2 208986402 208986402 A T CRYGD Missense_Mutation p.S174T 0.39 tolerated(0.9) benign(0) TCGA-78-7146-01 2 219892985 219892985 C T CCDC108 Missense_Mutation p.A597T 0.53 tolerated(0.65) benign(0.009) TCGA-78-7146-01 2 224862961 224862961 A T SERPINE2 Missense_Mutation p.S132T 0.46 deleterious(0.01) benign(0.116) TCGA-78-7146-01 2 235943571 235943571 G A SH3BP4 5'UTR 0.37 TCGA-78-7146-01 2 238268749 238268749 C A COL6A3 Silent p.P2088P 0.29 TCGA-78-7146-01 2 238268750 238268750 G A COL6A3 Missense_Mutation p.P2088L 0.29 probably_damaging(0.997) TCGA-78-7146-01 2 239169510 239169510 T A PER2 Missense_Mutation p.S501C 0.47 deleterious(0) probably_damaging(0.987) TCGA-78-7146-01 2 239186426 239186426 C G PER2 Missense_Mutation p.R51P 0.20 tolerated(0.05) possibly_damaging(0.7) TCGA-78-7146-01 2 240011702 240011702 G C HDAC4 Intron 0.64 TCGA-78-7146-01 2 45829179 45829179 C T SRBD1 Missense_Mutation p.E42K 0.26 tolerated_low_confidence(0.19) benign(0.293) TCGA-78-7146-01 2 54880932 54880932 G A SPTBN1 Missense_Mutation p.D1922N 0.19 deleterious(0) possibly_damaging(0.607) TCGA-78-7146-01 2 74749872 74749872 C T DQX1 Missense_Mutation p.E444K 0.20 deleterious(0) probably_damaging(1) TCGA-78-7146-01 2 96810004 96810004 C T DUSP2 Missense_Mutation p.A207T 0.18 tolerated(0.18) possibly_damaging(0.692) TCGA-78-7146-01 3 101390754 101390754 G C ZBTB11 Intron 0.56 TCGA-78-7146-01 3 101390998 101390998 C G ZBTB11 Missense_Mutation p.D124H 0.11 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-78-7146-01 3 10400586 10400586 G T ATP2B2 Missense_Mutation p.A642E 0.26 tolerated(0.31) benign(0.134) TCGA-78-7146-01 3 108308151 108308151 C G KIAA1524 Silent p.A24A 0.10 TCGA-78-7146-01 3 119912216 119912216 G A GPR156 Missense_Mutation p.L97F 0.66 tolerated(0.07) probably_damaging(0.965) TCGA-78-7146-01 3 121350770 121350770 C G HCLS1 Missense_Mutation p.D462H 0.16 deleterious(0) probably_damaging(0.961) TCGA-78-7146-01 3 121980671 121980671 G A CASR Silent p.T263T 0.66 TCGA-78-7146-01 3 124053288 124053288 G A KALRN Silent p.K529K 0.57 TCGA-78-7146-01 3 128205123 128205123 A T GATA2 Silent p.S106S 0.65 TCGA-78-7146-01 3 132172488 132172488 G C DNAJC13 Missense_Mutation p.E264Q 0.16 deleterious(0) probably_damaging(0.919) TCGA-78-7146-01 3 133363085 133363085 C T TOPBP1 Missense_Mutation p.D543N 0.16 tolerated(0.07) benign(0.25) TCGA-78-7146-01 3 1418747 1418747 C A CNTN6 Silent p.V718V 0.28 TCGA-78-7146-01 3 14861684 14861684 C A FGD5 Missense_Mutation p.A369E 0.29 tolerated_low_confidence(0.12) benign(0.433) TCGA-78-7146-01 3 150301704 150301704 C T EIF2A 3'UTR 0.25 TCGA-78-7146-01 3 151161220 151161220 C A IGSF10 Missense_Mutation p.A1839S 0.70 deleterious(0) possibly_damaging(0.521) TCGA-78-7146-01 3 164908279 164908279 G T SLITRK3 Missense_Mutation p.Q114K 0.68 deleterious(0.01) probably_damaging(0.977) TCGA-78-7146-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.57 deleterious(0.01) probably_damaging(1) TCGA-78-7146-01 3 179322349 179322349 A T MRPL47 Missense_Mutation p.S22T 0.60 tolerated(0.43) benign(0.011) TCGA-78-7146-01 3 186917744 186917744 G T RTP1 Silent p.S226S 0.17 TCGA-78-7146-01 3 194790779 194790779 C T XXYLT1 Missense_Mutation p.E283K 0.20 tolerated(0.36) benign(0.004) TCGA-78-7146-01 3 33886985 33886985 C T PDCD6IP Missense_Mutation p.H521Y 0.43 deleterious(0.03) benign(0.235) TCGA-78-7146-01 3 40528670 40528670 G A ZNF619 Silent p.Q263Q 0.42 TCGA-78-7146-01 3 43389872 43389872 C T SNRK Silent p.F707F 0.33 TCGA-78-7146-01 3 47385112 47385112 G T KLHL18 Missense_Mutation p.R469L 0.39 deleterious(0) probably_damaging(0.986) TCGA-78-7146-01 3 72881586 72881586 G C SHQ1 Missense_Mutation p.P178R 0.26 deleterious(0) benign(0.365) TCGA-78-7146-01 3 96963215 96963215 A T EPHA6 Intron 0.31 TCGA-78-7146-01 3 97983941 97983941 C T OR5H6 Silent p.L271L 0.17 TCGA-78-7146-01 4 107845305 107845305 C A DKK2 Missense_Mutation p.A196S 0.12 deleterious(0) probably_damaging(0.978) TCGA-78-7146-01 4 109670459 109670459 A T ETNPPL Missense_Mutation p.C288S 0.16 deleterious(0.04) probably_damaging(0.989) TCGA-78-7146-01 4 114158140 114158140 C A ANK2 Intron 0.25 TCGA-78-7146-01 4 123314764 123314764 G T ADAD1 Nonsense_Mutation p.E184* 0.16 TCGA-78-7146-01 4 13338157 13338157 C G HSP90AB2P RNA 0.22 TCGA-78-7146-01 4 13606339 13606339 C T BOD1L1 Missense_Mutation p.E729K 0.21 probably_damaging(0.998) TCGA-78-7146-01 4 143324110 143324110 T A INPP4B Missense_Mutation p.K118M 0.14 deleterious(0) possibly_damaging(0.812) TCGA-78-7146-01 4 152024970 152024970 A T RPS3A Intron 0.47 TCGA-78-7146-01 4 156840990 156840990 G T TDO2 Missense_Mutation p.D357Y 0.28 deleterious(0) possibly_damaging(0.863) TCGA-78-7146-01 4 159162747 159162747 A G TMEM144 Missense_Mutation p.I297V 0.19 tolerated(0.05) possibly_damaging(0.505) TCGA-78-7146-01 4 162376239 162376239 G C FSTL5 Missense_Mutation p.I586M 0.37 deleterious(0) probably_damaging(0.964) TCGA-78-7146-01 4 162841711 162841711 G T FSTL5 Missense_Mutation p.A85E 0.61 deleterious(0.02) probably_damaging(0.928) TCGA-78-7146-01 4 162841712 162841712 C T FSTL5 Missense_Mutation p.A85T 0.61 deleterious(0.04) possibly_damaging(0.902) TCGA-78-7146-01 4 169279395 169279395 C G DDX60L Missense_Mutation p.R1675P 0.27 deleterious(0.01) benign(0.003) TCGA-78-7146-01 4 173734859 173734859 C G GALNTL6 Missense_Mutation p.P303R 0.20 deleterious(0.03) probably_damaging(0.926) TCGA-78-7146-01 4 178231233 178231233 C A NEIL3 Silent p.L42L 0.56 TCGA-78-7146-01 4 26721717 26721717 G C TBC1D19 Missense_Mutation p.E352Q 0.15 tolerated(0.24) benign(0.045) TCGA-78-7146-01 4 36195256 36195256 G C ARAP2 Missense_Mutation p.Q501E 0.25 deleterious(0) probably_damaging(0.967) TCGA-78-7146-01 4 4411341 4411341 C A NSG1 Nonsense_Mutation p.C96* 0.19 TCGA-78-7146-01 4 48384741 48384741 A C SLAIN2 Missense_Mutation p.N340T 0.22 tolerated(1) benign(0.006) TCGA-78-7146-01 4 6114572 6114572 C T JAKMIP1 Silent p.S2S 0.23 TCGA-78-7146-01 4 68497610 68497610 T C UBA6 Missense_Mutation p.H720R 0.24 deleterious(0.02) possibly_damaging(0.66) TCGA-78-7146-01 4 71588181 71588181 C G RUFY3 5'UTR 0.29 TCGA-78-7146-01 4 90169820 90169820 G A GPRIN3 Missense_Mutation p.T481I 0.31 tolerated(0.43) benign(0.009) TCGA-78-7146-01 4 90169908 90169908 C A GPRIN3 Missense_Mutation p.A452S 0.29 tolerated(1) benign(0.001) TCGA-78-7146-01 5 1243760 1243760 G T SLC6A18 Missense_Mutation p.G408W 0.19 deleterious(0.01) probably_damaging(0.987) TCGA-78-7146-01 5 139938171 139938171 T A APBB3 Nonstop_Mutation p.*494Lext*9 0.33 TCGA-78-7146-01 5 140604502 140604502 C A PCDHB14 Silent p.A475A 0.58 TCGA-78-7146-01 5 140615601 140615601 C A PCDHB18 RNA 0.26 TCGA-78-7146-01 5 140625697 140625697 C T PCDHB15 Missense_Mutation p.T184I 0.46 tolerated_low_confidence(0.06) benign(0.001) TCGA-78-7146-01 5 140744567 140744567 G A PCDHGA5 Missense_Mutation p.G224S 0.28 tolerated_low_confidence(0.3) possibly_damaging(0.588) TCGA-78-7146-01 5 140754886 140754886 G T PCDHGA6 Silent p.R412R 0.59 TCGA-78-7146-01 5 140769383 140769383 G T PCDHGB4 Silent p.V644V 0.65 TCGA-78-7146-01 5 148206341 148206341 G T ADRB2 5'UTR 0.32 TCGA-78-7146-01 5 156378711 156378711 G A TIMD4 Missense_Mutation p.P164L 0.33 tolerated(0.19) benign(0.004) TCGA-78-7146-01 5 156895786 156895786 G T NIPAL4 Missense_Mutation p.V193F 0.34 deleterious(0.01) possibly_damaging(0.774) TCGA-78-7146-01 5 157232902 157232902 G C CLINT1 Nonsense_Mutation p.S305* 0.23 TCGA-78-7146-01 5 178413548 178413548 C A GRM6 Silent p.T569T 0.82 TCGA-78-7146-01 5 180377380 180377380 C T BTNL8 Missense_Mutation p.P447S 0.10 tolerated(0.67) benign(0.004) TCGA-78-7146-01 5 33441171 33441171 C T TARS 5'UTR 0.17 TCGA-78-7146-01 5 33997408 33997408 C - AMACR Intron 0.19 TCGA-78-7146-01 5 41150094 41150094 A T C6 Missense_Mutation p.L775Q 0.26 tolerated(0.36) benign(0.011) TCGA-78-7146-01 5 7892945 7892945 G T MTRR Missense_Mutation p.W519C 0.59 deleterious(0) probably_damaging(0.995) TCGA-78-7146-01 5 79367913 79367913 G C THBS4 Intron 0.38 TCGA-78-7146-01 5 81571919 81571919 C G RPS23 3'UTR 0.27 TCGA-78-7146-01 5 82817885 82817885 T A VCAN Missense_Mutation p.S1254T 0.32 deleterious(0.01) possibly_damaging(0.787) TCGA-78-7146-01 6 100838847 100838847 A C SIM1 Missense_Mutation p.I564S 0.13 deleterious_low_confidence(0.03) benign(0.355) TCGA-78-7146-01 6 109787383 109787383 C A ZBTB24 Missense_Mutation p.A589S 0.72 tolerated(0.09) benign(0.184) TCGA-78-7146-01 6 11191136 11191136 G C NEDD9 Silent p.G322G 0.06 TCGA-78-7146-01 6 117609682 117609682 G A ROS1 Silent p.H2339H 0.68 TCGA-78-7146-01 6 133137969 133137969 T C RPS12 Intron 0.04 TCGA-78-7146-01 6 137468969 137468969 G C IL22RA2 Missense_Mutation p.L178V 0.35 deleterious(0) possibly_damaging(0.646) TCGA-78-7146-01 6 143092293 143092293 T C HIVEP2 Missense_Mutation p.T1195A 0.23 tolerated(0.91) benign(0) TCGA-78-7146-01 6 146351145 146351145 C A GRM1 Silent p.S164S 0.35 TCGA-78-7146-01 6 165713955 165713955 C T C6orf118 Silent p.T258T 0.28 TCGA-78-7146-01 6 170105652 170105652 C G C6orf120 3'UTR 0.35 TCGA-78-7146-01 6 26045930 26045930 G A HIST1H3C Missense_Mutation p.E98K 0.22 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-78-7146-01 6 28057124 28057124 G T ZNF165 Missense_Mutation p.R445L 0.24 tolerated(0.05) benign(0.427) TCGA-78-7146-01 6 28116421 28116421 G T ZKSCAN8 Missense_Mutation p.W79L 0.49 deleterious(0) probably_damaging(0.999) TCGA-78-7146-01 6 29342228 29342228 G T OR12D3 Silent p.A279A 0.49 TCGA-78-7146-01 6 29430054 29430054 C A OR2H1 Missense_Mutation p.Q170K 0.41 tolerated(0.06) benign(0.039) TCGA-78-7146-01 6 32975251 32975251 G A HLA-DOA Silent p.N150N 0.24 TCGA-78-7146-01 6 52288818 52288818 G C EFHC1 Silent p.G46G 0.23 TCGA-78-7146-01 6 69684670 69684670 G T BAI3 Missense_Mutation p.C514F 0.58 deleterious(0) probably_damaging(0.998) TCGA-78-7146-01 6 87994459 87994459 G T GJB7 Missense_Mutation p.P58T 0.58 deleterious(0) probably_damaging(1) TCGA-78-7146-01 6 90406094 90406094 G A MDN1 Missense_Mutation p.S3123L 0.14 benign(0.086) TCGA-78-7146-01 6 97246991 97246991 G A GPR63 Missense_Mutation p.S206F 0.21 deleterious(0) probably_damaging(0.953) TCGA-78-7146-01 7 100086413 100086413 C T NYAP1 Silent p.L357L 0.68 TCGA-78-7146-01 7 107207602 107207602 A C DUS4L Missense_Mutation p.K29N 0.15 tolerated(0.12) benign(0.066) TCGA-78-7146-01 7 116963035 116963035 G A WNT2 Silent p.A3A 0.33 TCGA-78-7146-01 7 129929634 129929634 G - CPA2 3'UTR 0.26 TCGA-78-7146-01 7 140302141 140302141 C A DENND2A Missense_Mutation p.R19S 0.56 tolerated_low_confidence(0.1) benign(0.034) TCGA-78-7146-01 7 143807379 143807379 A T OR2A2 Missense_Mutation p.K235M 0.21 deleterious(0) probably_damaging(0.999) TCGA-78-7146-01 7 144288620 144288620 C G TPK1 Missense_Mutation p.D133H 0.27 deleterious(0) probably_damaging(1) TCGA-78-7146-01 7 149493573 149493573 C G SSPO RNA 0.37 TCGA-78-7146-01 7 19765177 19765177 C G TMEM196 Missense_Mutation p.R140T 0.24 deleterious(0) unknown(0) TCGA-78-7146-01 7 27134297 27134298 GC - HOXA1 Frame_Shift_Del p.A257Pfs*31 0.15 TCGA-78-7146-01 7 27204522 27204522 G T HOXA9 Silent p.G185G 0.21 TCGA-78-7146-01 7 33217091 33217091 A C BBS9 Silent p.G110G 0.23 TCGA-78-7146-01 7 45113931 45113931 C A CCM2 Silent p.R347R 0.56 TCGA-78-7146-01 7 4901207 4901207 C G PAPOLB Missense_Mutation p.E78Q 0.19 deleterious(0.03) probably_damaging(0.96) TCGA-78-7146-01 7 6777145 6777145 G A PMS2CL RNA 0.21 TCGA-78-7146-01 7 76062954 76062954 G T ZP3 Missense_Mutation p.D235Y 0.34 deleterious(0) probably_damaging(0.99) TCGA-78-7146-01 7 82585370 82585370 G A PCLO Silent p.D1633D 0.33 TCGA-78-7146-01 7 87479251 87479251 T C SLC25A40 Missense_Mutation p.K93E 0.22 deleterious(0) probably_damaging(0.97) TCGA-78-7146-01 7 88964059 88964059 T - ZNF804B Frame_Shift_Del p.L588Qfs*31 0.14 TCGA-78-7146-01 7 98257829 98257829 C - NPTX2 Frame_Shift_Del p.T396Qfs*103 0.17 TCGA-78-7146-01 8 10465235 10465235 C A RP1L1 Missense_Mutation p.A2125S 0.44 unknown(0) TCGA-78-7146-01 8 10465236 10465236 C A RP1L1 Missense_Mutation p.E2124D 0.45 unknown(0) TCGA-78-7146-01 8 106811019 106811019 G T ZFPM2 Missense_Mutation p.L269F 0.51 deleterious(0) possibly_damaging(0.906) TCGA-78-7146-01 8 113249539 113249539 C A CSMD3 Missense_Mutation p.G3503C 0.07 deleterious(0) probably_damaging(0.971) TCGA-78-7146-01 8 113304891 113304891 C T CSMD3 Missense_Mutation p.G2888E 0.22 deleterious(0.01) probably_damaging(1) TCGA-78-7146-01 8 116426582 116426582 C A TRPS1 Missense_Mutation p.R1185I 0.14 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-78-7146-01 8 117950508 117950508 G T AARD Missense_Mutation p.C9F 0.09 tolerated(0.23) benign(0) TCGA-78-7146-01 8 121534921 121534921 G T MTBP Nonsense_Mutation p.E880* 0.22 TCGA-78-7146-01 8 125058122 125058122 C A FER1L6 Missense_Mutation p.L902M 0.23 deleterious(0) probably_damaging(0.984) TCGA-78-7146-01 8 133909924 133909924 C T TG Missense_Mutation p.S1011F 0.11 tolerated(0.22) benign(0.076) TCGA-78-7146-01 8 139737670 139737670 G T COL22A1 Missense_Mutation p.P718H 0.17 unknown(0) TCGA-78-7146-01 8 139890292 139890292 G T COL22A1 Missense_Mutation p.A120E 0.24 unknown(0) TCGA-78-7146-01 8 141525309 141525309 A G CHRAC1 Missense_Mutation p.N120S 0.66 tolerated(0.31) unknown(0) TCGA-78-7146-01 8 143570748 143570748 G A BAI1 Silent p.P860P 0.10 TCGA-78-7146-01 8 143823815 143823815 C G SLURP1 5'UTR 0.15 TCGA-78-7146-01 8 144885846 144885846 G A SCRIB Missense_Mutation p.P1129S 0.44 possibly_damaging(0.53) TCGA-78-7146-01 8 27678139 27678139 C G PBK Missense_Mutation p.E180Q 0.09 deleterious(0.01) probably_damaging(0.991) TCGA-78-7146-01 8 30701132 30701132 G T TEX15 Missense_Mutation p.S1801Y 0.46 deleterious(0.02) possibly_damaging(0.698) TCGA-78-7146-01 8 51363127 51363127 G C SNTG1 Missense_Mutation p.G97R 0.63 deleterious(0) probably_damaging(0.998) TCGA-78-7146-01 8 52370113 52370113 A T PXDNL Missense_Mutation p.N309K 0.20 deleterious(0.04) probably_damaging(0.951) TCGA-78-7146-01 8 59502047 59502047 G A NSMAF Silent p.N756N 0.65 TCGA-78-7146-01 8 67786822 67786823 - T MCMDC2 Splice_Site p.X95_splice 0.10 TCGA-78-7146-01 8 70585458 70585458 C A SLCO5A1 Silent p.V731V 0.17 TCGA-78-7146-01 8 76465285 76465285 C T HNF4G Silent p.V156V 0.18 TCGA-78-7146-01 8 77616945 77616945 G T ZFHX4 Missense_Mutation p.D208Y 0.59 probably_damaging(0.963) TCGA-78-7146-01 8 77775797 77775797 C T ZFHX4 Nonsense_Mutation p.Q3283* 0.13 TCGA-78-7146-01 8 97847376 97847376 C A CPQ Silent p.L203L 0.09 TCGA-78-7146-01 8 99961691 99961691 G C OSR2 Missense_Mutation p.E171Q 0.13 tolerated(0.24) benign(0.341) TCGA-78-7146-01 9 107332133 107332133 C G OR13C8 Missense_Mutation p.P229A 0.21 deleterious(0.02) possibly_damaging(0.731) TCGA-78-7146-01 9 112705808 112705808 C T PALM2 3'Flank 0.24 TCGA-78-7146-01 9 113148263 113148263 A G SVEP1 Silent p.C3384C 0.25 TCGA-78-7146-01 9 117800574 117800574 C T TNC Silent p.V1826V 0.15 TCGA-78-7146-01 9 127561676 127561676 A T OLFML2A Missense_Mutation p.K192M 0.60 tolerated(0.11) probably_damaging(0.956) TCGA-78-7146-01 9 131012511 131012511 T C DNM1 Missense_Mutation p.Y732H 0.27 tolerated(0.14) benign(0.132) TCGA-78-7146-01 9 14842328 14842328 C T FREM1 Missense_Mutation p.G575E 0.48 deleterious(0.03) benign(0.141) TCGA-78-7146-01 9 43822631 43822631 T G CNTNAP3B Silent p.T395T 0.29 TCGA-78-7146-01 9 95480092 95480092 T C BICD2 Missense_Mutation p.M749V 0.38 tolerated(0.05) benign(0.059) TCGA-78-7146-01 X 100668391 100668391 G A HNRNPH2 3'UTR 0.34 TCGA-78-7146-01 X 101096267 101096267 T A NXF5 Missense_Mutation p.Q119H 0.16 deleterious(0.03) benign(0.045) TCGA-78-7146-01 X 105891594 105891594 G C CXorf57 Silent p.P652P 0.23 TCGA-78-7146-01 X 11187753 11187767 TGGGTCCAAATATGG - ARHGAP6 In_Frame_Del p.T556_P560del 0.15 TCGA-78-7146-01 X 115592960 115592960 G T CT83 Missense_Mutation p.T97N 0.24 deleterious(0.02) benign(0.198) TCGA-78-7146-01 X 117033283 117033283 G T KLHL13 Missense_Mutation p.A522E 0.20 deleterious(0.01) possibly_damaging(0.851) TCGA-78-7146-01 X 118708873 118708873 G T UBE2A Missense_Mutation p.E18D 0.14 tolerated(0.39) benign(0.001) TCGA-78-7146-01 X 124028175 124028175 C G TENM1 Missense_Mutation p.D169H 0.22 tolerated_low_confidence(0.14) benign(0.068) TCGA-78-7146-01 X 124029982 124029982 G T TENM1 Missense_Mutation p.T109K 0.22 deleterious_low_confidence(0) possibly_damaging(0.698) TCGA-78-7146-01 X 125685540 125685540 G T DCAF12L1 Missense_Mutation p.T351K 0.46 deleterious(0.04) possibly_damaging(0.675) TCGA-78-7146-01 X 128880267 128880267 G A XPNPEP2 Nonsense_Mutation p.W118* 0.43 TCGA-78-7146-01 X 130215554 130215554 C A ARHGAP36 5'UTR 0.28 TCGA-78-7146-01 X 134494568 134494568 G T ZNF449 Missense_Mutation p.G375V 0.24 deleterious(0) probably_damaging(1) TCGA-78-7146-01 X 134681154 134681154 G A DDX26B Missense_Mutation p.E236K 0.20 deleterious(0) probably_damaging(0.931) TCGA-78-7146-01 X 134993980 134993980 G T SAGE1 Missense_Mutation p.D797Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-78-7146-01 X 137793015 137793015 G C FGF13 Intron 0.11 TCGA-78-7146-01 X 139866216 139866216 G T CDR1 Missense_Mutation p.L106M 0.17 tolerated(0.11) benign(0.065) TCGA-78-7146-01 X 139866217 139866217 G T CDR1 Missense_Mutation p.F105L 0.18 tolerated(0.44) benign(0.294) TCGA-78-7146-01 X 140985061 140985061 A C MAGEC3 Missense_Mutation p.E506A 0.20 deleterious(0.01) possibly_damaging(0.626) TCGA-78-7146-01 X 149945922 149945922 C A CD99L2 Missense_Mutation p.G177V 0.16 deleterious(0.01) possibly_damaging(0.809) TCGA-78-7146-01 X 152482692 152482692 C G MAGEA1 Missense_Mutation p.A107P 0.04 tolerated(0.06) possibly_damaging(0.707) TCGA-78-7146-01 X 153036335 153036335 C A PLXNB3 Missense_Mutation p.F734L 0.42 tolerated(0.14) benign(0.017) TCGA-78-7146-01 X 153051277 153051277 G T IDH3G 3'UTR 0.20 TCGA-78-7146-01 X 153070073 153070073 G T PDZD4 Missense_Mutation p.L349I 0.17 tolerated(0.53) probably_damaging(0.998) TCGA-78-7146-01 X 153222782 153222782 G T HCFC1 Missense_Mutation p.T779N 0.15 tolerated(0.08) probably_damaging(0.989) TCGA-78-7146-01 X 153590478 153590478 C A FLNA Missense_Mutation p.A899S 0.15 deleterious(0.02) benign(0.045) TCGA-78-7146-01 X 154158690 154158690 T G F8 Silent p.A1125A 0.16 TCGA-78-7146-01 X 154225359 154225359 G T F8 Missense_Mutation p.P93T 0.17 deleterious(0) probably_damaging(1) TCGA-78-7146-01 X 154250791 154250791 G A F8 Missense_Mutation p.L13F 0.15 tolerated(0.16) benign(0.093) TCGA-78-7146-01 X 30268895 30268895 G T MAGEB1 Missense_Mutation p.Q95H 0.29 tolerated(0.05) possibly_damaging(0.682) TCGA-78-7146-01 X 3248399 3248399 G A MXRA5 Silent p.L123L 0.26 TCGA-78-7146-01 X 34961433 34961433 C A FAM47B Missense_Mutation p.A162D 0.56 deleterious(0.01) possibly_damaging(0.572) TCGA-78-7146-01 X 37028839 37028839 C A FAM47C Missense_Mutation p.L786I 0.24 tolerated(0.06) possibly_damaging(0.804) TCGA-78-7146-01 X 39933351 39933351 T A BCOR Missense_Mutation p.Q416H 0.25 tolerated(0.9) possibly_damaging(0.691) TCGA-78-7146-01 X 53245159 53245159 C G KDM5C Splice_Site p.X261_splice 0.40 TCGA-78-7146-01 X 54841756 54841756 G A MAGED2 Missense_Mutation p.E488K 0.19 tolerated(0.34) benign(0.32) TCGA-78-7146-01 X 55047577 55047577 A T ALAS2 Silent p.S182S 0.20 TCGA-78-7146-01 X 5821398 5821398 C A NLGN4X Missense_Mutation p.V441L 0.32 tolerated(0.43) probably_damaging(0.957) TCGA-78-7146-01 X 70787518 70787518 G A OGT Missense_Mutation p.V920I 0.43 tolerated(0.25) benign(0.036) TCGA-78-7146-01 X 72667491 72667491 G T CDX4 Silent p.G134G 0.29 TCGA-78-7146-01 X 79962959 79962959 G C BRWD3 Missense_Mutation p.P840R 0.21 tolerated(0.45) benign(0.119) TCGA-78-7146-01 X 99663107 99663107 C A PCDH19 Silent p.V163V 0.24 TCGA-78-7147-01 10 104174961 104174961 G A PSD Silent p.P261P 0.67 TCGA-78-7147-01 10 18331726 18331726 G T SLC39A12 Silent p.L680L 0.18 TCGA-78-7147-01 10 27687694 27687694 C G PTCHD3 Missense_Mutation p.L611F 0.16 tolerated(0.26) benign(0.049) TCGA-78-7147-01 10 37454056 37454056 C A ANKRD30A Missense_Mutation p.D623E 0.30 tolerated(0.54) benign(0.001) TCGA-78-7147-01 10 84711230 84711230 G A NRG3 Missense_Mutation p.E354K 0.28 tolerated(0.4) benign(0.175) TCGA-78-7147-01 11 117376278 117376278 C A DSCAML1 Missense_Mutation p.M711I 0.23 tolerated(0.39) benign(0.022) TCGA-78-7147-01 11 117869812 117869812 A T IL10RA Missense_Mutation p.Q398L 0.43 deleterious(0.01) possibly_damaging(0.776) TCGA-78-7147-01 11 119170559 119170559 G C CBL 3'UTR 0.16 TCGA-78-7147-01 11 122848574 122848574 C T BSX Missense_Mutation p.R162Q 0.16 deleterious(0) probably_damaging(1) TCGA-78-7147-01 11 122930391 122930391 C T HSPA8 Missense_Mutation p.E304K 0.19 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-78-7147-01 11 124310805 124310805 C A OR8B8 Missense_Mutation p.M59I 0.11 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-78-7147-01 11 129746708 129746708 C T NFRKB Missense_Mutation p.G577D 0.42 deleterious(0) unknown(0) TCGA-78-7147-01 11 13443224 13443224 C T BTBD10 Missense_Mutation p.R88K 0.19 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-78-7147-01 11 15260566 15260566 C A INSC Missense_Mutation p.L494M 0.77 deleterious(0) probably_damaging(1) TCGA-78-7147-01 11 16863110 16863110 G A PLEKHA7 Nonsense_Mutation p.R286* 0.10 TCGA-78-7147-01 11 22646799 22646799 G A FANCF Silent p.A186A 0.55 TCGA-78-7147-01 11 45967443 45967443 G A PHF21A Missense_Mutation p.T466I 0.10 tolerated(0.32) benign(0.346) TCGA-78-7147-01 11 48510625 48510625 C G OR4A47 Missense_Mutation p.S94C 0.12 deleterious_low_confidence(0.01) benign(0.021) TCGA-78-7147-01 11 48510902 48510902 C T OR4A47 Silent p.V186V 0.15 TCGA-78-7147-01 11 5221760 5221760 C A OR51V1 Silent p.V57V 0.50 TCGA-78-7147-01 11 55111023 55111023 T A OR4A16 Missense_Mutation p.M116K 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-78-7147-01 11 55433179 55433179 G T OR4C6 Missense_Mutation p.L179F 0.36 tolerated_low_confidence(0.05) possibly_damaging(0.651) TCGA-78-7147-01 11 55735495 55735495 C G OR10AG1 Missense_Mutation p.G149R 0.26 deleterious(0.02) benign(0.291) TCGA-78-7147-01 11 56085854 56085854 G T OR8K3 Missense_Mutation p.Q24H 0.32 deleterious_low_confidence(0.01) probably_damaging(0.965) TCGA-78-7147-01 11 56143276 56143276 G A OR8U1 Missense_Mutation p.M59I 0.04 deleterious(0) possibly_damaging(0.684) TCGA-78-7147-01 11 57428602 57428602 G A CLP1 Silent p.V324V 0.18 TCGA-78-7147-01 11 57799084 57799084 G T OR6Q1 Silent p.V220V 0.24 TCGA-78-7147-01 11 59211268 59211268 C T OR5A1 Silent p.V209V 0.20 TCGA-78-7147-01 11 60658701 60658701 C G PRPF19 Silent p.G484G 0.39 TCGA-78-7147-01 11 60666723 60666723 G A PRPF19 Silent p.P294P 0.16 TCGA-78-7147-01 11 61110123 61110123 G A DAK Silent p.V256V 0.28 TCGA-78-7147-01 11 6190980 6190980 C T OR52B2 Missense_Mutation p.D193N 0.65 tolerated(0.11) benign(0.335) TCGA-78-7147-01 11 64418777 64418777 C A NRXN2 Silent p.L956L 0.31 TCGA-78-7147-01 11 6462124 6462124 T A HPX Missense_Mutation p.T24S 0.48 tolerated(0.49) benign(0) TCGA-78-7147-01 11 76227220 76227220 C G C11orf30 Missense_Mutation p.S516R 0.15 deleterious(0) probably_damaging(0.944) TCGA-78-7147-01 11 78431415 78431415 C T TENM4 Missense_Mutation p.S1274N 0.26 deleterious(0) possibly_damaging(0.52) TCGA-78-7147-01 11 799896 799896 C A PIDD Missense_Mutation p.R798L 0.09 deleterious(0) probably_damaging(1) TCGA-78-7147-01 11 93834393 93834393 G A HEPHL1 Missense_Mutation p.V823I 0.19 tolerated(1) benign(0.009) TCGA-78-7147-01 12 100453175 100453175 A C UHRF1BP1L Missense_Mutation p.F627C 0.16 deleterious(0.02) benign(0.043) TCGA-78-7147-01 12 101790284 101790284 G A ARL1 Silent p.S136S 0.17 TCGA-78-7147-01 12 105467760 105467760 C T ALDH1L2 Silent p.K24K 0.22 TCGA-78-7147-01 12 106786859 106786859 G T POLR3B Missense_Mutation p.E258D 0.29 tolerated(0.96) benign(0.003) TCGA-78-7147-01 12 112182571 112182571 G T ACAD10 Silent p.P644P 0.32 TCGA-78-7147-01 12 113559399 113559399 C A RASAL1 Nonsense_Mutation p.E115* 0.06 TCGA-78-7147-01 12 117595761 117595761 C G FBXO21 Missense_Mutation p.E485D 0.19 tolerated(0.44) benign(0.002) TCGA-78-7147-01 12 120546238 120546238 G A RAB35 Missense_Mutation p.A29V 0.09 deleterious(0.02) benign(0.213) TCGA-78-7147-01 12 123214920 123214920 A G HCAR1 5'UTR 0.22 TCGA-78-7147-01 12 125449154 125449154 C G DHX37 Missense_Mutation p.E611Q 0.07 tolerated(0.09) probably_damaging(0.917) TCGA-78-7147-01 12 130845802 130845802 C A PIWIL1 Silent p.T581T 0.17 TCGA-78-7147-01 12 31440662 31440662 T C FAM60A Missense_Mutation p.S138G 0.50 deleterious(0.01) probably_damaging(0.99) TCGA-78-7147-01 12 43896082 43896082 C G ADAMTS20 Missense_Mutation p.R247T 0.20 tolerated(0.64) benign(0.003) TCGA-78-7147-01 12 4920657 4920657 C T KCNA6 Nonsense_Mutation p.Q484* 0.30 TCGA-78-7147-01 12 51856190 51856190 G C SLC4A8 Missense_Mutation p.E400Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-78-7147-01 12 56536636 56536636 C T ESYT1 Missense_Mutation p.A979V 0.06 tolerated(0.55) benign(0.007) TCGA-78-7147-01 12 56664146 56664146 C A COQ10A 3'UTR 0.20 TCGA-78-7147-01 12 57327928 57327928 G T SDR9C7 Missense_Mutation p.L40M 0.32 deleterious(0.03) benign(0.118) TCGA-78-7147-01 12 57389146 57389146 C A GPR182 Silent p.T51T 0.34 TCGA-78-7147-01 12 57850009 57850009 G T INHBE Missense_Mutation p.R144L 0.16 tolerated(0.46) possibly_damaging(0.449) TCGA-78-7147-01 12 69967839 69967839 A G FRS2 Missense_Mutation p.S211G 0.11 tolerated(0.09) benign(0) TCGA-78-7147-01 12 72388341 72388341 C A TPH2 Missense_Mutation p.A355D 0.48 deleterious(0) possibly_damaging(0.87) TCGA-78-7147-01 12 85438563 85438563 A G LRRIQ1 Silent p.E104E 0.29 TCGA-78-7147-01 12 8995922 8995922 G A A2ML1 Missense_Mutation p.A481T 0.33 tolerated(0.56) benign(0.158) TCGA-78-7147-01 12 95603981 95603981 T A FGD6 Missense_Mutation p.K360I 0.28 deleterious_low_confidence(0) benign(0.379) TCGA-78-7147-01 13 113979886 113979886 T G GRTP1 Intron 0.25 TCGA-78-7147-01 13 28588591 28588591 C T FLT3 Missense_Mutation p.A953T 0.31 tolerated(0.12) benign(0.115) TCGA-78-7147-01 13 38154714 38154714 G - POSTN Frame_Shift_Del p.Q505Kfs*17 0.30 TCGA-78-7147-01 13 38211107 38211107 C T TRPC4 Missense_Mutation p.S961N 0.37 tolerated_low_confidence(0.36) benign(0) TCGA-78-7147-01 13 84455574 84455574 A T SLITRK1 Silent p.V23V 0.54 TCGA-78-7147-01 13 98086961 98086961 C T RAP2A Silent p.I79I 0.17 TCGA-78-7147-01 14 20249415 20249415 G T OR4M1 Nonsense_Mutation p.E312* 0.32 TCGA-78-7147-01 14 22102534 22102534 G T OR10G2 Silent p.V155V 0.49 TCGA-78-7147-01 14 23847972 23847972 C T CMTM5 Intron 0.18 TCGA-78-7147-01 14 24839538 24839538 C T NFATC4 Missense_Mutation p.P375S 0.17 tolerated(0.21) benign(0.013) TCGA-78-7147-01 14 35262077 35262077 C T BAZ1A Missense_Mutation p.E472K 0.16 deleterious(0) possibly_damaging(0.893) TCGA-78-7147-01 14 51345565 51345565 G - ABHD12B Frame_Shift_Del 0.34 TCGA-78-7147-01 14 77255719 77255719 T C ANGEL1 Missense_Mutation p.Y622C 0.62 tolerated(0.12) benign(0.03) TCGA-78-7147-01 15 24923368 24923368 C A NPAP1 Missense_Mutation p.S785Y 0.49 tolerated_low_confidence(0.07) possibly_damaging(0.781) TCGA-78-7147-01 15 28389852 28389852 G C HERC2 Missense_Mutation p.R3703G 0.26 probably_damaging(0.983) TCGA-78-7147-01 15 32460210 32460210 C T CHRNA7 Missense_Mutation p.R383C 0.13 deleterious(0.02) benign(0.087) TCGA-78-7147-01 15 66795792 66795792 C A RPL4 Missense_Mutation p.V27L 0.41 deleterious(0.04) benign(0.313) TCGA-78-7147-01 15 74032288 74032288 G T C15orf59 Silent p.A284A 0.37 TCGA-78-7147-01 16 10273919 10273919 G A GRIN2A Missense_Mutation p.S117F 0.06 deleterious(0) probably_damaging(0.997) TCGA-78-7147-01 16 1584550 1584550 G A TMEM204 Missense_Mutation p.V92I 0.23 deleterious_low_confidence(0.01) probably_damaging(0.952) TCGA-78-7147-01 16 15865511 15865511 G A MYH11 Silent p.P323P 0.28 TCGA-78-7147-01 16 17211698 17211698 C T XYLT1 Missense_Mutation p.V788I 0.19 tolerated(0.46) benign(0.021) TCGA-78-7147-01 16 19498557 19498557 C T TMC5 Missense_Mutation p.R828W 0.53 deleterious(0) probably_damaging(1) TCGA-78-7147-01 16 21262199 21262199 G T ANKS4B 3'UTR 0.33 TCGA-78-7147-01 16 31485158 31485158 C A TGFB1I1 Missense_Mutation p.T62K 0.15 tolerated(0.16) probably_damaging(1) TCGA-78-7147-01 16 48234288 48234288 G - ABCC11 Frame_Shift_Del p.L661Cfs*29 0.23 TCGA-78-7147-01 16 52497959 52497959 C T TOX3 Missense_Mutation p.G99R 0.16 deleterious(0.05) probably_damaging(0.999) TCGA-78-7147-01 16 771923 771923 C T FAM173A Silent p.R130R 0.50 TCGA-78-7147-01 16 9934621 9934621 G A GRIN2A Missense_Mutation p.L512F 0.26 deleterious(0) probably_damaging(1) TCGA-78-7147-01 17 21731221 21731221 A T UBBP4 Intron 0.09 TCGA-78-7147-01 17 30815150 30815150 C G CDK5R1 Missense_Mutation p.P171R 0.08 deleterious(0) probably_damaging(0.965) TCGA-78-7147-01 17 34894229 34894229 C T PIGW Silent p.L427L 0.29 TCGA-78-7147-01 17 37187374 37187374 T G CTD-2206N4.2 5'Flank 0.25 TCGA-78-7147-01 17 37188422 37188422 C G LRRC37A11P RNA 0.17 TCGA-78-7147-01 17 38244647 38244647 G T THRA Silent p.L292L 0.28 TCGA-78-7147-01 17 39190856 39190856 G A KRTAP1-3 Missense_Mutation p.P73L 0.38 deleterious(0) unknown(0) TCGA-78-7147-01 17 42478104 42478104 C A GPATCH8 Missense_Mutation p.K447N 0.35 tolerated(0.3) possibly_damaging(0.632) TCGA-78-7147-01 17 45376752 45376752 C G ITGB3 Missense_Mutation p.T590S 0.38 deleterious(0.02) benign(0.135) TCGA-78-7147-01 17 47123696 47123696 G C IGF2BP1 Missense_Mutation p.Q534H 0.23 deleterious(0) possibly_damaging(0.783) TCGA-78-7147-01 17 47241556 47241556 C A B4GALNT2 Silent p.T351T 0.28 TCGA-78-7147-01 17 48699156 48699156 G C CACNA1G Splice_Site p.X2020_splice 0.12 TCGA-78-7147-01 17 57109262 57109262 G A TRIM37 Missense_Mutation p.P648L 0.17 deleterious_low_confidence(0.02) benign(0.009) TCGA-78-7147-01 17 57647936 57647936 C T DHX40 Missense_Mutation p.S113L 0.23 deleterious(0) probably_damaging(0.995) TCGA-78-7147-01 17 61611628 61611628 G A KCNH6 Missense_Mutation p.A353T 0.16 deleterious(0) probably_damaging(0.999) TCGA-78-7147-01 17 62050231 62050231 G T SCN4A 5'UTR 0.40 TCGA-78-7147-01 17 65104710 65104710 T C HELZ Missense_Mutation p.Q1541R 0.24 tolerated_low_confidence(0.05) unknown(0) TCGA-78-7147-01 17 72278023 72278023 C A DNAI2 Missense_Mutation p.R23S 0.44 tolerated(0.14) benign(0.05) TCGA-78-7147-01 17 7577573 7577573 G T TP53 Nonsense_Mutation p.Y236* 0.56 TCGA-78-7147-01 17 76526495 76526495 C G DNAH17 Missense_Mutation p.A1072P 0.18 possibly_damaging(0.819) TCGA-78-7147-01 18 11889438 11889438 G A MPPE1 Missense_Mutation p.H148Y 0.28 tolerated(0.05) benign(0.37) TCGA-78-7147-01 18 14543194 14543196 TAC AA POTEC 5'Flank 0.17 TCGA-78-7147-01 18 3067287 3067287 G T MYOM1 Silent p.S1677S 0.54 TCGA-78-7147-01 18 77894189 77894189 A G ADNP2 Missense_Mutation p.Q298R 0.31 tolerated(0.14) benign(0.009) TCGA-78-7147-01 19 10439672 10439672 C T RAVER1 Silent p.L151L 0.33 TCGA-78-7147-01 19 22575653 22575653 G T ZNF98 Missense_Mutation p.S128R 0.21 tolerated(0.06) benign(0.146) TCGA-78-7147-01 19 22941422 22941422 C T ZNF99 Missense_Mutation p.C430Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-78-7147-01 19 30935900 30935900 C A ZNF536 Silent p.A477A 0.09 TCGA-78-7147-01 19 31040177 31040177 C A ZNF536 Silent p.P1217P 0.16 TCGA-78-7147-01 19 36831589 36831589 C T ZFP14 Missense_Mutation p.R380K 0.38 tolerated(0.15) probably_damaging(0.963) TCGA-78-7147-01 19 40199884 40199884 G T LGALS14 Silent p.P146P 0.21 TCGA-78-7147-01 19 42853681 42853681 G A MEGF8 Missense_Mutation p.E710K 0.24 tolerated(0.11) benign(0.343) TCGA-78-7147-01 19 44224056 44224056 A T IRGC Missense_Mutation p.K449M 0.37 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-78-7147-01 19 44536246 44536246 C G ZNF222 Nonsense_Mutation p.S180* 0.22 TCGA-78-7147-01 19 45322414 45322414 G T BCAM Missense_Mutation p.D480Y 0.23 deleterious(0) possibly_damaging(0.447) TCGA-78-7147-01 19 463978 463978 C A ODF3L2 Nonsense_Mutation p.E246* 0.43 TCGA-78-7147-01 19 47124419 47124419 A C PTGIR 3'UTR 0.40 TCGA-78-7147-01 19 47124810 47124810 G T PTGIR Silent p.R296R 0.38 TCGA-78-7147-01 19 52938390 52938390 T C ZNF534 Missense_Mutation p.W80R 0.25 tolerated(0.31) benign(0.013) TCGA-78-7147-01 19 53572747 53572747 C T ZNF160 Missense_Mutation p.G347E 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-78-7147-01 19 54502940 54502940 C A CACNG6 Silent p.A153A 0.46 TCGA-78-7147-01 19 54783278 54783278 G A LILRB2 Missense_Mutation p.H194Y 0.28 tolerated(0.18) benign(0) TCGA-78-7147-01 19 56156247 56156247 C T ZNF581 Nonsense_Mutation p.R104* 0.25 TCGA-78-7147-01 19 57176525 57176525 C T ZNF835 Silent p.L14L 0.26 TCGA-78-7147-01 19 58453016 58453016 G T ZNF256 Missense_Mutation p.S387Y 0.17 tolerated(0.06) probably_damaging(0.997) TCGA-78-7147-01 19 58490876 58490876 G C ZNF606 Missense_Mutation p.T391R 0.15 tolerated(0.53) benign(0.098) TCGA-78-7147-01 19 59022759 59022759 C G SLC27A5 Silent p.L188L 0.47 TCGA-78-7147-01 19 831948 831948 C T AZU1 3'UTR 0.21 TCGA-78-7147-01 19 9009600 9009600 G T MUC16 Silent p.V13042V 0.21 TCGA-78-7147-01 19 9065356 9065356 G C MUC16 Missense_Mutation p.H7364D 0.29 unknown(0) TCGA-78-7147-01 1 107600045 107600045 C G PRMT6 Missense_Mutation p.I236M 0.13 tolerated(0.1) benign(0.219) TCGA-78-7147-01 1 110714814 110714814 G T SLC6A17 Missense_Mutation p.G140V 0.38 tolerated(0.06) probably_damaging(0.992) TCGA-78-7147-01 1 12837248 12837248 C A PRAMEF12 Missense_Mutation p.Q320K 0.20 deleterious(0.01) benign(0.351) TCGA-78-7147-01 1 14109132 14109132 G C PRDM2 Missense_Mutation p.R1614S 0.15 unknown(0) TCGA-78-7147-01 1 145367750 145367750 G T NBPF10 Missense_Mutation p.G3449V 0.16 probably_damaging(0.999) TCGA-78-7147-01 1 148017573 148017573 G A NBPF14 Missense_Mutation p.S243L 0.05 tolerated(0.08) probably_damaging(0.997) TCGA-78-7147-01 1 150599834 150599834 T C ENSA Intron 0.20 TCGA-78-7147-01 1 152280700 152280700 C A FLG Missense_Mutation p.R2221I 0.40 possibly_damaging(0.639) TCGA-78-7147-01 1 154207096 154207096 G T UBAP2L Missense_Mutation p.K103N 0.30 deleterious(0) unknown(0) TCGA-78-7147-01 1 156639370 156639370 C T NES Missense_Mutation p.G1537D 0.26 deleterious(0) probably_damaging(0.972) TCGA-78-7147-01 1 156910211 156910211 C T ARHGEF11 Missense_Mutation p.G1174E 0.13 tolerated_low_confidence(0.17) benign(0.046) TCGA-78-7147-01 1 158576407 158576407 A T OR10Z1 Missense_Mutation p.Y60F 0.19 deleterious(0.01) probably_damaging(0.985) TCGA-78-7147-01 1 158613152 158613152 T A SPTA1 Nonsense_Mutation p.K1468* 0.37 TCGA-78-7147-01 1 158646039 158646039 G T SPTA1 Missense_Mutation p.P335H 0.34 deleterious(0.04) probably_damaging(0.972) TCGA-78-7147-01 1 158725561 158725561 T A OR6K6 Missense_Mutation p.L319Q 0.21 deleterious(0) probably_damaging(0.997) TCGA-78-7147-01 1 158911901 158911901 G A PYHIN1 Missense_Mutation p.M238I 0.41 deleterious(0) probably_damaging(0.97) TCGA-78-7147-01 1 158986358 158986358 C A IFI16 Silent p.P139P 0.40 TCGA-78-7147-01 1 17250965 17250965 C T CROCC Silent p.V114V 0.32 TCGA-78-7147-01 1 183090875 183090875 G C LAMC1 Missense_Mutation p.D670H 0.09 deleterious(0) probably_damaging(0.975) TCGA-78-7147-01 1 186344044 186344044 C T TPR Silent p.L39L 0.47 TCGA-78-7147-01 1 196712628 196712628 G T CFH Silent p.V1060V 0.51 TCGA-78-7147-01 1 197021789 197021789 C T F13B Silent p.V510V 0.10 TCGA-78-7147-01 1 197074087 197074087 T G ASPM Silent p.R1432R 0.14 TCGA-78-7147-01 1 201839778 201839778 A G IPO9 Missense_Mutation p.E734G 0.21 tolerated(0.23) benign(0.002) TCGA-78-7147-01 1 202287145 202287145 G A LGR6 Missense_Mutation p.V572M 0.19 deleterious(0.03) benign(0.433) TCGA-78-7147-01 1 214818194 214818194 G C CENPF Missense_Mutation p.D1761H 0.25 benign(0.437) TCGA-78-7147-01 1 227843036 227843036 C G ZNF678 Nonsense_Mutation p.S362* 0.12 TCGA-78-7147-01 1 228112026 228112026 G T WNT9A Missense_Mutation p.A143E 0.30 tolerated(0.2) probably_damaging(0.981) TCGA-78-7147-01 1 22927868 22927868 G T EPHA8 Silent p.V935V 0.29 TCGA-78-7147-01 1 232601073 232601073 T A SIPA1L2 Missense_Mutation p.D778V 0.15 deleterious(0) probably_damaging(1) TCGA-78-7147-01 1 232601074 232601074 C A SIPA1L2 Missense_Mutation p.D778Y 0.15 deleterious(0) probably_damaging(1) TCGA-78-7147-01 1 233394715 233394715 C T PCNXL2 Missense_Mutation p.R298Q 0.08 tolerated_low_confidence(1) benign(0) TCGA-78-7147-01 1 235359370 235359370 C A ARID4B Missense_Mutation p.K634N 0.17 deleterious(0) probably_damaging(0.996) TCGA-78-7147-01 1 237756921 237756921 G T RYR2 Missense_Mutation p.G1474V 0.22 probably_damaging(0.998) TCGA-78-7147-01 1 237774159 237774159 T G RYR2 Missense_Mutation p.V1594G 0.16 possibly_damaging(0.892) TCGA-78-7147-01 1 238050811 238050811 T C ZP4 Missense_Mutation p.N202D 0.38 tolerated(1) benign(0.013) TCGA-78-7147-01 1 238051760 238051760 T C ZP4 Missense_Mutation p.R151G 0.26 deleterious(0) probably_damaging(0.995) TCGA-78-7147-01 1 238090216 238090216 C A RP11-193H5.1 RNA 0.26 TCGA-78-7147-01 1 24172269 24172269 T A FUCA1 Missense_Mutation p.Q446L 0.04 tolerated(0.51) benign(0.002) TCGA-78-7147-01 1 247875228 247875228 A T OR6F1 Missense_Mutation p.L277Q 0.32 deleterious(0) probably_damaging(0.992) TCGA-78-7147-01 1 248129095 248129095 G T OR2AK2 Missense_Mutation p.K154N 0.35 tolerated(0.08) benign(0.019) TCGA-78-7147-01 1 248616271 248616271 C A OR2T2 Missense_Mutation p.T58K 0.17 deleterious(0.01) benign(0.36) TCGA-78-7147-01 1 26357001 26357001 G T EXTL1 Missense_Mutation p.R339L 0.24 deleterious(0) possibly_damaging(0.578) TCGA-78-7147-01 1 28476723 28476723 G - PTAFR Frame_Shift_Del p.I271Lfs*18 0.23 TCGA-78-7147-01 1 35351192 35351192 G C DLGAP3 Missense_Mutation p.P601A 0.38 tolerated(0.68) benign(0.039) TCGA-78-7147-01 1 41978898 41978898 G A HIVEP3 Silent p.S1998S 0.33 TCGA-78-7147-01 1 41978901 41978901 G A HIVEP3 Silent p.C1997C 0.34 TCGA-78-7147-01 1 43775150 43775150 G A TIE1 Missense_Mutation p.R427H 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-78-7147-01 1 44596220 44596220 C T KLF17 Missense_Mutation p.S321L 0.40 tolerated(0.17) benign(0.005) TCGA-78-7147-01 1 46032833 46032833 G C AKR1A1 Intron 0.45 TCGA-78-7147-01 1 55590228 55590228 C T USP24 Missense_Mutation p.R1345Q 0.18 tolerated(0.09) benign(0.201) TCGA-78-7147-01 1 62961329 62961329 G A DOCK7 Silent p.L1618L 0.12 TCGA-78-7147-01 1 70489004 70489004 C T LRRC7 Missense_Mutation p.P543S 0.22 tolerated(0.44) benign(0) TCGA-78-7147-01 1 87805833 87805833 T C LMO4 Missense_Mutation p.I146T 0.24 tolerated(0.13) benign(0.003) TCGA-78-7147-01 1 94586678 94586678 G A ABCA4 5'UTR 0.41 TCGA-78-7147-01 1 99771495 99771495 G - LPPR4 Frame_Shift_Del p.E408Rfs*18 0.15 TCGA-78-7147-01 20 20350422 20350422 T C INSM1 Missense_Mutation p.V504A 0.17 deleterious(0.01) benign(0.153) TCGA-78-7147-01 20 30585273 30585273 C A XKR7 3'UTR 0.55 TCGA-78-7147-01 20 35219609 35219609 A G TGIF2 Silent p.T163T 0.21 TCGA-78-7147-01 20 44507365 44507365 A T ZSWIM3 3'UTR 0.19 TCGA-78-7147-01 20 47317347 47317347 C A PREX1 Missense_Mutation p.Q287H 0.27 deleterious(0) probably_damaging(0.954) TCGA-78-7147-01 20 50768964 50768964 C G ZFP64 Silent p.T589T 0.39 TCGA-78-7147-01 20 51870753 51870753 C A TSHZ2 Silent p.P252P 0.24 TCGA-78-7147-01 20 61982135 61982135 C A CHRNA4 Missense_Mutation p.V210F 0.31 tolerated(0.05) probably_damaging(0.917) TCGA-78-7147-01 21 27852738 27852738 T A CYYR1 Missense_Mutation p.I63F 0.13 deleterious(0) probably_damaging(0.969) TCGA-78-7147-01 21 37741749 37741749 C T MORC3 Nonsense_Mutation p.Q695* 0.49 TCGA-78-7147-01 21 40191522 40191522 C T ETS2 Silent p.L303L 0.44 TCGA-78-7147-01 21 44438242 44438242 G T PKNOX1 Splice_Site p.X208_splice 0.60 TCGA-78-7147-01 21 45550715 45550715 G A PWP2 3'UTR 0.12 TCGA-78-7147-01 22 21386115 21386115 G A SLC7A4 5'UTR 0.09 TCGA-78-7147-01 22 24981999 24981999 C T FAM211B Missense_Mutation p.S268N 0.18 tolerated(0.09) benign(0.022) TCGA-78-7147-01 22 31032948 31032948 T C SLC35E4 Missense_Mutation p.C171R 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-78-7147-01 22 32188070 32188070 T A DEPDC5 Missense_Mutation p.Y226N 0.48 deleterious(0) probably_damaging(1) TCGA-78-7147-01 22 32239157 32239157 G T DEPDC5 Silent p.T855T 0.39 TCGA-78-7147-01 22 41833088 41833088 C T TOB2 Missense_Mutation p.E88K 0.12 tolerated(0.31) benign(0.036) TCGA-78-7147-01 22 41913580 41913580 C T ACO2 Silent p.S295S 0.08 TCGA-78-7147-01 22 43831029 43831029 G T MPPED1 Silent p.S100S 0.34 TCGA-78-7147-01 22 46860009 46860009 C T CELSR1 Missense_Mutation p.V1260M 0.18 deleterious(0) probably_damaging(0.999) TCGA-78-7147-01 2 10263558 10263558 G A RRM2 Silent p.L133L 0.22 TCGA-78-7147-01 2 107423166 107423166 G T ST6GAL2 Missense_Mutation p.P520T 0.34 benign(0.17) TCGA-78-7147-01 2 11758583 11758583 C G GREB1 Silent p.P1194P 0.29 TCGA-78-7147-01 2 127453545 127453545 G T GYPC Missense_Mutation p.V72F 0.22 tolerated(0.11) probably_damaging(0.954) TCGA-78-7147-01 2 144381787 144381787 T A ARHGAP15 Silent p.P363P 0.57 TCGA-78-7147-01 2 158115703 158115703 C T GALNT5 Missense_Mutation p.S370L 0.34 tolerated(0.23) benign(0.001) TCGA-78-7147-01 2 158974356 158974356 C A UPP2 Silent p.S177S 0.24 TCGA-78-7147-01 2 163241415 163241415 A G KCNH7 Silent p.D915D 0.13 TCGA-78-7147-01 2 176965464 176965464 G A HOXD12 Silent p.R263R 0.33 TCGA-78-7147-01 2 179467165 179467165 C G TTN Missense_Mutation p.V18322L 0.24 TCGA-78-7147-01 2 182387061 182387061 T C ITGA4 Missense_Mutation p.L689S 0.60 deleterious(0) probably_damaging(0.983) TCGA-78-7147-01 2 207174788 207174788 C T ZDBF2 Silent p.L1846L 0.34 TCGA-78-7147-01 2 207564892 207564892 C A DYTN Missense_Mutation p.A178S 0.10 deleterious(0) probably_damaging(1) TCGA-78-7147-01 2 220478566 220478566 G C STK11IP Missense_Mutation p.R888P 0.20 deleterious(0.01) possibly_damaging(0.884) TCGA-78-7147-01 2 232458229 232458229 C T C2orf57 Silent p.T189T 0.57 TCGA-78-7147-01 2 233323045 233323045 G A ALPI Silent p.L370L 0.24 TCGA-78-7147-01 2 234359623 234359623 T G DGKD Missense_Mutation p.S698R 0.42 tolerated(0.09) benign(0.002) TCGA-78-7147-01 2 238462236 238462236 C T MLPH 3'UTR 0.47 TCGA-78-7147-01 2 26700060 26700060 G T OTOF Missense_Mutation p.L835M 0.27 deleterious(0) benign(0.08) TCGA-78-7147-01 2 31489255 31489255 A T EHD3 Silent p.G431G 0.38 TCGA-78-7147-01 2 46739371 46739372 - T ATP6V1E2 Frame_Shift_Ins p.K161Efs*8 0.19 TCGA-78-7147-01 2 63176238 63176238 G A EHBP1 Missense_Mutation p.D788N 0.31 tolerated_low_confidence(0.08) benign(0.005) TCGA-78-7147-01 2 69565628 69565628 T A GFPT1 Nonsense_Mutation p.R425* 0.18 TCGA-78-7147-01 2 73491152 73491152 G C FBXO41 Silent p.T612T 0.56 TCGA-78-7147-01 2 74718451 74718451 C - TTC31 Frame_Shift_Del p.P213Hfs*46 0.41 TCGA-78-7147-01 2 97526514 97526514 G C SEMA4C Nonsense_Mutation p.S784* 0.33 TCGA-78-7147-01 3 101443515 101443515 G T CEP97 5'UTR 0.24 TCGA-78-7147-01 3 112538705 112538705 C A CD200R1L Silent p.L239L 0.24 TCGA-78-7147-01 3 122631807 122631807 C G SEMA5B Missense_Mutation p.E924Q 0.17 deleterious(0.02) probably_damaging(0.962) TCGA-78-7147-01 3 122849399 122849399 C T PDIA5 Silent p.T282T 0.14 TCGA-78-7147-01 3 135721990 135721990 C G PPP2R3A Silent p.T550T 0.24 TCGA-78-7147-01 3 13670462 13670462 A G FBLN2 Missense_Mutation p.N876S 0.27 deleterious(0) probably_damaging(0.999) TCGA-78-7147-01 3 138762829 138762829 G A PRR23C Missense_Mutation p.R212C 0.48 tolerated(0.18) benign(0.005) TCGA-78-7147-01 3 142141705 142141705 T C XRN1 Missense_Mutation p.Y257C 0.28 deleterious(0) probably_damaging(0.981) TCGA-78-7147-01 3 160155748 160155748 A G TRIM59 3'UTR 0.21 TCGA-78-7147-01 3 164700152 164700152 C A SI Missense_Mutation p.S1765I 0.78 tolerated(0.14) benign(0.017) TCGA-78-7147-01 3 17448070 17448070 T - TBC1D5 Intron 0.29 TCGA-78-7147-01 3 183006944 183006944 C A MCF2L2 Silent p.R580R 0.10 TCGA-78-7147-01 3 39307243 39307243 A T CX3CR1 Missense_Mutation p.L285Q 0.61 deleterious(0) probably_damaging(0.98) TCGA-78-7147-01 3 53757478 53757478 C T CACNA1D Missense_Mutation p.L582F 0.34 tolerated(0.24) probably_damaging(0.999) TCGA-78-7147-01 3 86010666 86010666 C A CADM2 Missense_Mutation p.P273H 0.37 deleterious(0.02) possibly_damaging(0.77) TCGA-78-7147-01 4 106858224 106858224 C A NPNT Nonsense_Mutation p.Y138* 0.65 TCGA-78-7147-01 4 107016734 107016734 C G TBCK Missense_Mutation p.G826R 0.65 tolerated(0.08) benign(0.033) TCGA-78-7147-01 4 110415918 110415918 C G SEC24B Missense_Mutation p.T465R 0.34 tolerated(0.06) benign(0.003) TCGA-78-7147-01 4 114277965 114277965 G A ANK2 Missense_Mutation p.G2731S 0.36 benign(0.012) TCGA-78-7147-01 4 122835998 122835998 C T TRPC3 Silent p.V426V 0.39 TCGA-78-7147-01 4 153897411 153897411 A T FHDC1 Missense_Mutation p.R990W 0.74 deleterious(0) probably_damaging(0.999) TCGA-78-7147-01 4 162463753 162463753 G T FSTL5 Missense_Mutation p.P370T 0.50 deleterious(0) probably_damaging(0.998) TCGA-78-7147-01 4 175565175 175565175 T A GLRA3 Missense_Mutation p.Y386F 0.25 tolerated(0.45) benign(0.019) TCGA-78-7147-01 4 22749486 22749486 G C GBA3 Missense_Mutation p.R285T 0.29 deleterious(0) probably_damaging(0.995) TCGA-78-7147-01 4 27000912 27000912 C G STIM2 Missense_Mutation p.H190D 0.12 tolerated(0.13) probably_damaging(1) TCGA-78-7147-01 4 3447936 3447936 G C HGFAC Missense_Mutation p.A424P 0.38 deleterious(0) probably_damaging(0.999) TCGA-78-7147-01 4 39515741 39515741 C T UGDH Missense_Mutation p.D76N 0.19 tolerated(0.09) benign(0.013) TCGA-78-7147-01 4 40104480 40104480 A T N4BP2 Nonsense_Mutation p.K339* 0.49 TCGA-78-7147-01 4 57796484 57796484 A T REST Missense_Mutation p.Q487L 0.18 deleterious(0.01) possibly_damaging(0.859) TCGA-78-7147-01 4 5857888 5857888 C T CRMP1 Missense_Mutation p.V268M 0.17 tolerated(0.09) benign(0.046) TCGA-78-7147-01 4 81123069 81123069 G T PRDM8 Silent p.G151G 0.31 TCGA-78-7147-01 4 9784944 9784944 G T DRD5 Nonsense_Mutation p.E431* 0.21 TCGA-78-7147-01 5 114588852 114588852 C A PGGT1B Missense_Mutation p.V81F 0.21 deleterious(0) benign(0.267) TCGA-78-7147-01 5 1221831 1221831 T C SLC6A19 Missense_Mutation p.S573P 0.12 tolerated(0.17) benign(0.073) TCGA-78-7147-01 5 135207197 135207197 G T SLC25A48 Intron 0.24 TCGA-78-7147-01 5 135489586 135489586 A G SMAD5 Missense_Mutation p.K46R 0.06 tolerated(0.07) possibly_damaging(0.607) TCGA-78-7147-01 5 13714584 13714584 C A DNAH5 Missense_Mutation p.R4352L 0.32 possibly_damaging(0.569) TCGA-78-7147-01 5 139006460 139006460 A G UBE2D2 3'UTR 0.37 TCGA-78-7147-01 5 140201577 140201577 C G PCDHA5 Missense_Mutation p.L73V 0.41 deleterious_low_confidence(0) possibly_damaging(0.693) TCGA-78-7147-01 5 140242323 140242325 TGG A AC005609.1 3'UTR 0.18 TCGA-78-7147-01 5 140475866 140475866 C T PCDHB2 Missense_Mutation p.P498S 0.14 deleterious_low_confidence(0.03) benign(0.183) TCGA-78-7147-01 5 140552496 140552496 G T PCDHB7 Missense_Mutation p.G27V 0.39 tolerated_low_confidence(0.12) benign(0.025) TCGA-78-7147-01 5 140563434 140563434 G C PCDHB16 Missense_Mutation p.E434Q 0.17 tolerated_low_confidence(1) benign(0.01) TCGA-78-7147-01 5 140719169 140719169 G C PCDHGA2 Missense_Mutation p.V211L 0.40 tolerated_low_confidence(0.37) benign(0.236) TCGA-78-7147-01 5 14280519 14280519 C G TRIO Silent p.L107L 0.08 TCGA-78-7147-01 5 14291337 14291337 G T TRIO Missense_Mutation p.K351N 0.24 probably_damaging(0.992) TCGA-78-7147-01 5 149008500 149008500 C T ARHGEF37 Silent p.L597L 0.39 TCGA-78-7147-01 5 149459794 149459794 A T CSF1R Missense_Mutation p.V138D 0.22 deleterious(0.05) probably_damaging(0.972) TCGA-78-7147-01 5 150405018 150405018 G A GPX3 Missense_Mutation p.V69M 0.05 deleterious(0) probably_damaging(0.997) TCGA-78-7147-01 5 154188019 154188019 A T LARP1 Missense_Mutation p.E823V 0.40 deleterious(0) possibly_damaging(0.819) TCGA-78-7147-01 5 159680645 159680645 C T CCNJL Missense_Mutation p.V350M 0.47 tolerated(0.09) benign(0.1) TCGA-78-7147-01 5 161128640 161128640 C G GABRA6 Missense_Mutation p.S408W 0.39 deleterious(0.04) possibly_damaging(0.523) TCGA-78-7147-01 5 176070182 176070182 C A EIF4E1B Missense_Mutation p.P39T 0.27 tolerated(0.06) benign(0.269) TCGA-78-7147-01 5 176072502 176072502 G T EIF4E1B Missense_Mutation p.G200V 0.41 deleterious(0) possibly_damaging(0.864) TCGA-78-7147-01 5 176295796 176295796 C A UNC5A Silent p.L184L 0.24 TCGA-78-7147-01 5 177642304 177642304 A G PHYKPL Missense_Mutation p.I352T 0.16 tolerated(0.52) benign(0) TCGA-78-7147-01 5 19543986 19543986 G T CDH18 Nonsense_Mutation p.S461* 0.29 TCGA-78-7147-01 5 23527452 23527452 A T PRDM9 Missense_Mutation p.E752V 0.50 tolerated(0.09) probably_damaging(0.997) TCGA-78-7147-01 5 2749827 2749827 G A IRX2 Silent p.Y108Y 0.18 TCGA-78-7147-01 5 32774833 32774833 G C NPR3 Missense_Mutation p.G360A 0.09 tolerated(0.6) probably_damaging(1) TCGA-78-7147-01 5 33944822 33944822 C G SLC45A2 Silent p.V508V 0.17 TCGA-78-7147-01 5 35712959 35712959 A C SPEF2 Missense_Mutation p.K962T 0.54 deleterious(0.02) benign(0.037) TCGA-78-7147-01 5 52360854 52360854 T A ITGA2 Missense_Mutation p.V572E 0.44 deleterious(0) probably_damaging(0.943) TCGA-78-7147-01 5 63509437 63509437 G T RNF180 Missense_Mutation p.G95V 0.15 deleterious(0.02) probably_damaging(0.972) TCGA-78-7147-01 5 64314067 64314067 C A CWC27 Silent p.I446I 0.21 TCGA-78-7147-01 5 73148476 73148476 G T ARHGEF28 Missense_Mutation p.E583D 0.30 tolerated(0.4) benign(0.049) TCGA-78-7147-01 5 75913421 75913421 A T F2RL2 Missense_Mutation p.Y371N 0.17 deleterious(0) probably_damaging(0.942) TCGA-78-7147-01 5 87492083 87492083 A - TMEM161B Frame_Shift_Del p.L470Pfs*15 0.21 TCGA-78-7147-01 5 95728928 95728928 G T PCSK1 Missense_Mutation p.P680Q 0.36 deleterious_low_confidence(0.01) benign(0.09) TCGA-78-7147-01 6 105233031 105233031 G A HACE1 Missense_Mutation p.P413L 0.29 tolerated(0.13) benign(0.004) TCGA-78-7147-01 6 106727555 106727555 G A ATG5 Silent p.L153L 0.19 TCGA-78-7147-01 6 122792921 122792921 G T SERINC1 5'UTR 0.35 TCGA-78-7147-01 6 127768217 127768217 G A KIAA0408 Missense_Mutation p.A416V 0.14 deleterious(0.03) benign(0.004) TCGA-78-7147-01 6 132891745 132891745 G T TAAR6 Missense_Mutation p.E95D 0.26 deleterious(0.04) benign(0.181) TCGA-78-7147-01 6 133044097 133044097 G A VNN3 3'UTR 0.19 TCGA-78-7147-01 6 152738009 152738009 C A SYNE1 Nonsense_Mutation p.E1855* 0.13 TCGA-78-7147-01 6 160430048 160430048 C G IGF2R Missense_Mutation p.S99C 0.26 tolerated(0.18) possibly_damaging(0.776) TCGA-78-7147-01 6 160874553 160874553 A G SLC22A3 3'Flank 0.18 TCGA-78-7147-01 6 161139345 161139345 T A PLG Silent p.S269S 0.34 TCGA-78-7147-01 6 161567608 161567608 G C AGPAT4 Missense_Mutation p.P264R 0.13 deleterious(0) probably_damaging(0.918) TCGA-78-7147-01 6 17688669 17688669 C T NUP153 Missense_Mutation p.D98N 0.37 deleterious(0.01) probably_damaging(0.992) TCGA-78-7147-01 6 24850828 24850828 G C FAM65B Missense_Mutation p.I265M 0.27 deleterious(0) probably_damaging(1) TCGA-78-7147-01 6 26123920 26123920 A C HIST1H2BC Missense_Mutation p.F71L 0.41 deleterious_low_confidence(0.02) benign(0.398) TCGA-78-7147-01 6 26225469 26225469 C A HIST1H3E Missense_Mutation p.S29R 0.18 deleterious_low_confidence(0.01) benign(0.009) TCGA-78-7147-01 6 29142013 29142013 A G OR2J2 Missense_Mutation p.M201V 0.14 deleterious(0.01) benign(0.062) TCGA-78-7147-01 6 29640726 29640726 G A ZFP57 Missense_Mutation p.H388Y 0.16 tolerated(0.29) benign(0.064) TCGA-78-7147-01 6 33383646 33383646 C T PHF1 Missense_Mutation p.S492L 0.41 tolerated(0.28) benign(0.144) TCGA-78-7147-01 6 43400666 43400666 G C ABCC10 Silent p.G316G 0.32 TCGA-78-7147-01 6 53387311 53387311 C A GCLC Missense_Mutation p.L55F 0.08 deleterious(0) probably_damaging(0.924) TCGA-78-7147-01 6 54805944 54805944 C G FAM83B Silent p.T725T 0.35 TCGA-78-7147-01 6 70071320 70071320 G C BAI3 Missense_Mutation p.K1385N 0.12 tolerated(0.26) benign(0.046) TCGA-78-7147-01 6 80816606 80816606 G C BCKDHB Missense_Mutation p.G66R 0.38 deleterious(0.04) benign(0.021) TCGA-78-7147-01 7 100684481 100684481 T A MUC17 Missense_Mutation p.S3262T 0.33 benign(0.297) TCGA-78-7147-01 7 100686420 100686420 C G MUC17 Missense_Mutation p.P3908R 0.12 benign(0.001) TCGA-78-7147-01 7 100686595 100686595 A G MUC17 Missense_Mutation p.I3966M 0.04 benign(0.04) TCGA-78-7147-01 7 107832248 107832248 C - NRCAM Frame_Shift_Del p.D610Tfs*44 0.24 TCGA-78-7147-01 7 112424094 112424094 T C TMEM168 Missense_Mutation p.R263G 0.17 deleterious(0) benign(0.37) TCGA-78-7147-01 7 11676584 11676584 T C THSD7A Silent p.P65P 0.21 TCGA-78-7147-01 7 128494176 128494176 C G FLNC Silent p.T2211T 0.43 TCGA-78-7147-01 7 128494178 128494178 A T FLNC Missense_Mutation p.Q2212L 0.43 deleterious(0.03) benign(0) TCGA-78-7147-01 7 135258468 135258468 C G NUP205 Missense_Mutation p.Q80E 0.24 tolerated(0.3) benign(0.062) TCGA-78-7147-01 7 142008650 142008650 A C TRBV3-1 Missense_Mutation p.K41N 0.20 tolerated(0.09) benign(0.029) TCGA-78-7147-01 7 142239560 142239560 A T TRBV9 Nonsense_Mutation p.L107* 0.30 TCGA-78-7147-01 7 142423633 142423633 C T TRBV27 Silent p.L97L 0.10 TCGA-78-7147-01 7 143000948 143000948 G A CASP2 Missense_Mutation p.D347N 0.25 tolerated(0.1) possibly_damaging(0.491) TCGA-78-7147-01 7 148703045 148703045 C A PDIA4 Missense_Mutation p.R411M 0.38 tolerated(0.07) benign(0.016) TCGA-78-7147-01 7 148951158 148951158 C G ZNF212 Missense_Mutation p.C380W 0.47 tolerated(0.19) probably_damaging(0.992) TCGA-78-7147-01 7 150784108 150784108 G C AGAP3 Missense_Mutation p.E94Q 0.24 tolerated(0.13) benign(0.165) TCGA-78-7147-01 7 151135069 151135069 C T CRYGN Intron 0.41 TCGA-78-7147-01 7 151680215 151680215 G A GALNTL5 Silent p.L171L 0.32 TCGA-78-7147-01 7 157475553 157475553 G T PTPRN2 Missense_Mutation p.S622Y 0.44 deleterious(0) probably_damaging(0.994) TCGA-78-7147-01 7 27134078 27134078 G C HOXA1 Missense_Mutation p.T330S 0.10 tolerated_low_confidence(0.4) possibly_damaging(0.486) TCGA-78-7147-01 7 34006128 34006129 - A BMPER Frame_Shift_Ins p.W121Mfs*6 0.19 TCGA-78-7147-01 7 39503780 39503780 G - POU6F2 Splice_Site p.X524_splice 0.20 TCGA-78-7147-01 7 44144413 44144413 G A AEBP1 Missense_Mutation p.R50Q 0.18 tolerated_low_confidence(0.06) unknown(0) TCGA-78-7147-01 7 47842862 47842862 C A PKD1L1 Missense_Mutation p.M2636I 0.25 tolerated(0.25) benign(0.033) TCGA-78-7147-01 7 55224477 55224477 C A EGFR Missense_Mutation p.L387M 0.54 tolerated(0.28) probably_damaging(0.999) TCGA-78-7147-01 7 55259524 55259524 T A EGFR Missense_Mutation p.L861Q 0.60 deleterious(0) possibly_damaging(0.831) TCGA-78-7147-01 7 55270296 55270296 C - EGFR Frame_Shift_Del p.D1083Efs*11 0.33 TCGA-78-7147-01 7 57528740 57528740 C T ZNF716 Silent p.G191G 0.50 TCGA-78-7147-01 7 6094328 6094328 A T EIF2AK1 Missense_Mutation p.D42E 0.07 deleterious(0.02) probably_damaging(0.947) TCGA-78-7147-01 7 72743431 72743431 C T FKBP6 Missense_Mutation p.R82W 0.17 deleterious(0.01) probably_damaging(0.943) TCGA-78-7147-01 7 81714097 81714097 G C CACNA2D1 Missense_Mutation p.R216G 0.21 deleterious(0) probably_damaging(0.999) TCGA-78-7147-01 8 106814840 106814840 A T ZFPM2 Missense_Mutation p.T844S 0.25 tolerated(0.95) benign(0) TCGA-78-7147-01 8 11412886 11412886 G C BLK Missense_Mutation p.R222P 0.16 tolerated(0.13) benign(0) TCGA-78-7147-01 8 11606499 11606499 C T GATA4 Nonsense_Mutation p.R230* 0.15 TCGA-78-7147-01 8 142367614 142367614 G A GPR20 Missense_Mutation p.S137F 0.24 deleterious(0) probably_damaging(0.998) TCGA-78-7147-01 8 143832527 143832527 G T LYPD2 Silent p.I40I 0.13 TCGA-78-7147-01 8 143956411 143956411 G A CYP11B1 Missense_Mutation p.R454C 0.14 deleterious(0) probably_damaging(1) TCGA-78-7147-01 8 1513916 1513916 T C DLGAP2 Missense_Mutation p.M353T 0.10 deleterious(0) benign(0.008) TCGA-78-7147-01 8 1645345 1645345 G A DLGAP2 Silent p.Q863Q 0.16 TCGA-78-7147-01 8 35624523 35624523 T A UNC5D Missense_Mutation p.I806N 0.08 deleterious(0.03) probably_damaging(0.94) TCGA-78-7147-01 8 38314957 38314957 C A FGFR1 Missense_Mutation p.S36I 0.66 deleterious_low_confidence(0.02) benign(0.206) TCGA-78-7147-01 8 52336147 52336147 G C PXDNL Missense_Mutation p.L595V 0.38 tolerated(0.19) probably_damaging(0.986) TCGA-78-7147-01 8 70980575 70980575 C A PRDM14 Missense_Mutation p.V268L 0.47 deleterious(0) possibly_damaging(0.622) TCGA-78-7147-01 8 75756296 75756296 G A PI15 Silent p.L118L 0.15 TCGA-78-7147-01 8 77690655 77690655 A T ZFHX4 Missense_Mutation p.D1102V 0.06 benign(0.025) TCGA-78-7147-01 8 82370844 82370845 - T FABP9 Frame_Shift_Ins p.M114Nfs*6 0.32 TCGA-78-7147-01 9 101148033 101148033 T C GABBR2 Silent p.P517P 0.30 TCGA-78-7147-01 9 107332000 107332000 C A OR13C8 Silent p.I184I 0.26 TCGA-78-7147-01 9 125154703 125154703 G T PTGS1 Silent p.T560T 0.16 TCGA-78-7147-01 9 136582475 136582475 C T SARDH Missense_Mutation p.G375R 0.25 deleterious(0) probably_damaging(0.99) TCGA-78-7147-01 9 138588558 138588558 G T SOHLH1 Silent p.S187S 0.35 TCGA-78-7147-01 9 140100217 140100217 C G NDOR1 5'UTR 0.20 TCGA-78-7147-01 9 21367722 21367722 A G IFNA13 Silent p.D96D 0.42 TCGA-78-7147-01 9 6013819 6013819 A C RANBP6 Missense_Mutation p.S597A 0.12 tolerated(0.2) benign(0.004) TCGA-78-7147-01 9 72783656 72783656 T C MAMDC2 Silent p.C481C 0.32 TCGA-78-7147-01 9 79322624 79322624 A T PRUNE2 Silent p.L1522L 0.53 TCGA-78-7147-01 9 95846817 95846817 A T SUSD3 Splice_Site p.X186_splice 0.38 TCGA-78-7147-01 X 101139699 101139699 T A ZMAT1 Nonsense_Mutation p.R234* 0.28 TCGA-78-7147-01 X 101970387 101970387 G T GPRASP2 Missense_Mutation p.G197V 0.20 tolerated(0.05) benign(0.015) TCGA-78-7147-01 X 102564409 102564409 A T BEX2 3'UTR 0.26 TCGA-78-7147-01 X 103080378 103080378 C T RAB9B Missense_Mutation p.D113N 0.22 tolerated(0.18) benign(0.007) TCGA-78-7147-01 X 103499225 103499225 C A ESX1 Missense_Mutation p.R39M 0.21 tolerated_low_confidence(0.12) benign(0.137) TCGA-78-7147-01 X 106871771 106871771 G T PRPS1 5'UTR 0.18 TCGA-78-7147-01 X 107397111 107397111 A G ATG4A 3'UTR 0.42 TCGA-78-7147-01 X 109764374 109764374 T G TDGF1P3 RNA 0.21 TCGA-78-7147-01 X 115304569 115304569 A G AGTR2 Missense_Mutation p.S346G 0.27 tolerated(0.06) benign(0.024) TCGA-78-7147-01 X 118123528 118123528 C T LONRF3 Missense_Mutation p.P406L 0.21 tolerated(0.12) benign(0.002) TCGA-78-7147-01 X 125298677 125298677 G T DCAF12L2 Missense_Mutation p.L411I 0.23 tolerated(0.14) benign(0.02) TCGA-78-7147-01 X 129519241 129519241 G T GPR119 Missense_Mutation p.L61I 0.49 tolerated(0.18) possibly_damaging(0.838) TCGA-78-7147-01 X 131212132 131212132 T C FRMD7 Missense_Mutation p.D638G 0.24 tolerated(0.38) benign(0) TCGA-78-7147-01 X 13337384 13337384 G T ATXN3L Missense_Mutation p.Q224K 0.23 tolerated(0.06) benign(0.017) TCGA-78-7147-01 X 134156260 134156260 A T FAM127C Missense_Mutation p.L77Q 0.25 tolerated(0.38) possibly_damaging(0.561) TCGA-78-7147-01 X 150840242 150840242 C A PASD1 Silent p.A476A 0.18 TCGA-78-7147-01 X 151818215 151818215 G T GABRQ Silent p.T207T 0.21 TCGA-78-7147-01 X 151869487 151869487 A T MAGEA6 Silent p.P59P 0.37 TCGA-78-7147-01 X 153171892 153171892 G C AVPR2 Intron 0.19 TCGA-78-7147-01 X 153171918 153171918 G A AVPR2 Intron 0.21 TCGA-78-7147-01 X 153420089 153420089 G C OPN1LW Missense_Mutation p.V207L 0.12 tolerated(0.12) benign(0.291) TCGA-78-7147-01 X 153670994 153670994 A C GDI1 Missense_Mutation p.D440A 0.14 deleterious(0.01) benign(0.08) TCGA-78-7147-01 X 153699969 153699969 G A PLXNA3 Silent p.K1836K 0.31 TCGA-78-7147-01 X 154013434 154013434 T C MPP1 Splice_Site p.X226_splice 0.53 TCGA-78-7147-01 X 154282872 154282872 G T FUNDC2 Silent p.V165V 0.23 TCGA-78-7147-01 X 155119210 155119210 G A VAMP7 Silent p.E27E 0.16 TCGA-78-7147-01 X 155235830 155235830 C A IL9R Nonsense_Mutation p.Y288* 0.45 TCGA-78-7147-01 X 17167027 17167028 - A REPS2 3'UTR 0.21 TCGA-78-7147-01 X 26212723 26212723 G A MAGEB6 Missense_Mutation p.E254K 0.27 tolerated(0.11) probably_damaging(0.989) TCGA-78-7147-01 X 27840147 27840147 G T MAGEB10 Missense_Mutation p.G242W 0.24 deleterious(0) probably_damaging(1) TCGA-78-7147-01 X 31792208 31792208 C G DMD Missense_Mutation p.A2471P 0.16 possibly_damaging(0.82) TCGA-78-7147-01 X 34962518 34962518 C A FAM47B Silent p.R524R 0.53 TCGA-78-7147-01 X 37027388 37027388 G A FAM47C Missense_Mutation p.G302E 0.16 tolerated(0.27) probably_damaging(0.969) TCGA-78-7147-01 X 45013318 45013318 G T CXorf36 Missense_Mutation p.D266E 0.10 deleterious(0) probably_damaging(0.982) TCGA-78-7147-01 X 46618393 46618393 C T SLC9A7 Silent p.L24L 0.50 TCGA-78-7147-01 X 47444660 47444660 C A TIMP1 Silent p.T86T 0.21 TCGA-78-7147-01 X 47836869 47836869 T C ZNF182 Missense_Mutation p.Y206C 0.38 tolerated(0.15) benign(0.005) TCGA-78-7147-01 X 49068380 49068380 G T CACNA1F Missense_Mutation p.Q1371K 0.21 deleterious(0) benign(0.081) TCGA-78-7147-01 X 49089783 49089783 G A CACNA1F 5'UTR 0.17 TCGA-78-7147-01 X 53267475 53267475 C T IQSEC2 Silent p.G1043G 0.30 TCGA-78-7147-01 X 53571710 53571710 C A HUWE1 Nonsense_Mutation p.E3688* 0.29 TCGA-78-7147-01 X 54800519 54800519 C A ITIH6 Nonsense_Mutation p.E300* 0.20 TCGA-78-7147-01 X 57620134 57620134 C G ZXDB Missense_Mutation p.I551M 0.15 tolerated(0.05) benign(0.027) TCGA-78-7147-01 X 5821599 5821600 - T NLGN4X Frame_Shift_Ins p.G374Rfs*13 0.19 TCGA-78-7147-01 X 62570542 62570542 T A SPIN4 Missense_Mutation p.N53Y 0.24 tolerated(0.06) possibly_damaging(0.771) TCGA-78-7147-01 X 67938187 67938187 G - STARD8 Frame_Shift_Del p.A478Hfs*61 0.18 TCGA-78-7147-01 X 70348450 70348450 C A MED12 Silent p.V1119V 0.33 TCGA-78-7147-01 X 73046187 73046187 G A XIST RNA 0.13 TCGA-78-7147-01 X 73070996 73070996 A T XIST RNA 0.25 TCGA-78-7147-01 X 99956569 99956569 C A SYTL4 Missense_Mutation p.G71C 0.35 deleterious(0) probably_damaging(1) TCGA-78-7147-01 X 99956570 99956570 C A SYTL4 Silent p.L70L 0.35 TCGA-78-7148-01 10 103773783 103773783 T A C10orf76 Splice_Site p.X224_splice 0.07 TCGA-78-7148-01 10 104103885 104103885 A T GBF1 Missense_Mutation p.I81F 0.43 deleterious(0) possibly_damaging(0.852) TCGA-78-7148-01 10 104486383 104486383 G T SFXN2 5'UTR 0.05 TCGA-78-7148-01 10 105209508 105209508 G T CALHM2 Missense_Mutation p.P64H 0.07 deleterious(0) probably_damaging(1) TCGA-78-7148-01 10 115540429 115540429 C G PLEKHS1 3'Flank 0.43 TCGA-78-7148-01 10 129913665 129913665 C A MKI67 Missense_Mutation p.S336I 0.46 tolerated(0.09) benign(0.13) TCGA-78-7148-01 10 18266839 18266839 C A SLC39A12 Missense_Mutation p.Q254K 0.20 tolerated(0.15) benign(0.002) TCGA-78-7148-01 10 30315934 30315935 AA - KIAA1462 Frame_Shift_Del p.L1048Tfs*15 0.18 TCGA-78-7148-01 10 30728114 30728114 G T MAP3K8 Missense_Mutation p.D83Y 0.29 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-78-7148-01 10 38651210 38651210 G A HSD17B7P2 RNA 0.29 TCGA-78-7148-01 10 48388863 48388863 G A RBP3 Missense_Mutation p.A672V 0.32 tolerated(0.28) possibly_damaging(0.483) TCGA-78-7148-01 10 49452849 49452849 C A FRMPD2 Missense_Mutation p.G118V 0.39 tolerated(0.09) possibly_damaging(0.737) TCGA-78-7148-01 10 6157627 6157627 C T RBM17 3'UTR 0.29 TCGA-78-7148-01 10 8007139 8007139 A G TAF3 Missense_Mutation p.K556E 0.38 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-78-7148-01 10 87406989 87406989 G C GRID1 Missense_Mutation p.C721W 0.23 tolerated(0.2) probably_damaging(0.975) TCGA-78-7148-01 10 95931199 95931199 C T PLCE1 Silent p.T585T 0.28 TCGA-78-7148-01 10 99968469 99968469 G T R3HCC1L Missense_Mutation p.D200Y 0.20 deleterious(0) benign(0.277) TCGA-78-7148-01 11 103907872 103907872 C G DDI1 Missense_Mutation p.R108G 0.51 tolerated(0.32) benign(0.009) TCGA-78-7148-01 11 130784585 130784585 T A SNX19 Missense_Mutation p.E417V 0.39 tolerated(0.16) benign(0.016) TCGA-78-7148-01 11 133807324 133807324 C G IGSF9B Missense_Mutation p.R209P 0.55 deleterious(0.02) probably_damaging(0.999) TCGA-78-7148-01 11 15212246 15212246 G T INSC Splice_Site p.X241_splice 0.29 TCGA-78-7148-01 11 17409694 17409694 G C KCNJ11 5'UTR 0.14 TCGA-78-7148-01 11 30953443 30953443 T A DCDC1 Missense_Mutation p.K924N 0.33 deleterious(0.03) possibly_damaging(0.607) TCGA-78-7148-01 11 3661402 3661402 G - ART5 Frame_Shift_Del p.P86Lfs*9 0.14 TCGA-78-7148-01 11 55406128 55406128 C G OR4P4 Missense_Mutation p.L99V 0.16 tolerated(0.34) benign(0.226) TCGA-78-7148-01 11 56468651 56468651 C A OR9G1 Missense_Mutation p.S263Y 0.07 deleterious(0) possibly_damaging(0.896) TCGA-78-7148-01 11 64575538 64575538 G T MEN1 Missense_Mutation p.A165D 0.47 deleterious(0) probably_damaging(0.996) TCGA-78-7148-01 11 65266579 65266582 CAGA - MALAT1 RNA 0.48 TCGA-78-7148-01 11 66082510 66082510 A G CD248 Silent p.A663A 0.11 TCGA-78-7148-01 11 6648581 6648581 C A DCHS1 Missense_Mutation p.G1897C 0.33 deleterious(0.04) probably_damaging(0.992) TCGA-78-7148-01 11 71259973 71259973 A T KRTAP5-9 Silent p.S90S 0.42 TCGA-78-7148-01 11 76372307 76372307 C T LRRC32 Silent p.A110A 0.18 TCGA-78-7148-01 11 88337921 88337921 C A GRM5 Silent p.T453T 0.53 TCGA-78-7148-01 11 88338052 88338052 C A GRM5 Missense_Mutation p.G410W 0.55 deleterious(0) probably_damaging(1) TCGA-78-7148-01 11 92534237 92534237 A G FAT3 Silent p.P2686P 0.09 TCGA-78-7148-01 12 109182463 109182463 C T SSH1 Silent p.Q817Q 0.12 TCGA-78-7148-01 12 113445593 113445593 G T OAS2 Silent p.G580G 0.06 TCGA-78-7148-01 12 117271635 117271635 G C RNFT2 Silent p.L307L 0.37 TCGA-78-7148-01 12 121758194 121758194 G A ANAPC5 Silent p.H503H 0.11 TCGA-78-7148-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.47 deleterious(0.04) probably_damaging(0.993) TCGA-78-7148-01 12 44781917 44781917 C T TMEM117 Missense_Mutation p.P336L 0.11 deleterious(0) probably_damaging(0.998) TCGA-78-7148-01 12 49359933 49359933 C A WNT10B Missense_Mutation p.C372F 0.25 deleterious(0) probably_damaging(0.996) TCGA-78-7148-01 12 49444044 49444044 G A KMT2D Silent p.A1109A 0.13 TCGA-78-7148-01 12 56236185 56236185 A G MMP19 Missense_Mutation p.L42P 0.06 deleterious(0.01) probably_damaging(1) TCGA-78-7148-01 12 6624087 6624087 G A NCAPD2 Splice_Site p.X329_splice 0.37 TCGA-78-7148-01 12 69115750 69115750 G C NUP107 Missense_Mutation p.E481Q 0.41 tolerated(0.07) possibly_damaging(0.788) TCGA-78-7148-01 12 91449763 91449763 C G KERA Missense_Mutation p.W99S 0.31 deleterious(0) possibly_damaging(0.688) TCGA-78-7148-01 13 107822825 107822825 T A FAM155A 3'UTR 0.29 TCGA-78-7148-01 13 25433215 25433215 G A RNF17 Nonsense_Mutation p.W1229* 0.15 TCGA-78-7148-01 13 37427691 37427691 C A SMAD9 Missense_Mutation p.K375N 0.27 deleterious(0) probably_damaging(1) TCGA-78-7148-01 13 77831856 77831856 T C MYCBP2 Missense_Mutation p.N671S 0.39 probably_damaging(0.994) TCGA-78-7148-01 13 98829015 98829015 G C RNF113B Missense_Mutation p.P159R 0.25 tolerated(0.15) benign(0.168) TCGA-78-7148-01 14 20345265 20345265 C A OR4K2 Missense_Mutation p.P280H 0.33 deleterious(0) probably_damaging(1) TCGA-78-7148-01 14 23004542 23004542 C A TRAJ9 Missense_Mutation p.T14K 0.28 unknown(0) TCGA-78-7148-01 14 23598917 23598917 G A SLC7A8 Missense_Mutation p.T402M 0.13 deleterious(0) probably_damaging(0.985) TCGA-78-7148-01 14 23884616 23884616 C A MYH7 Nonsense_Mutation p.E1753* 0.38 TCGA-78-7148-01 14 70634870 70634870 C T SLC8A3 Silent p.G90G 0.09 TCGA-78-7148-01 14 89087624 89087624 T G EML5 Silent p.R1679R 0.41 TCGA-78-7148-01 14 94394694 94394694 C T FAM181A Silent p.I83I 0.24 TCGA-78-7148-01 15 101098995 101098995 C A RNU6-181P 3'Flank 0.28 TCGA-78-7148-01 15 101464780 101464780 G C LRRK1 5'UTR 0.23 TCGA-78-7148-01 15 28231765 28231765 C G OCA2 Missense_Mutation p.E403Q 0.34 deleterious(0.02) possibly_damaging(0.812) TCGA-78-7148-01 15 33962744 33962744 G A RYR3 Silent p.E1949E 0.29 TCGA-78-7148-01 15 34546597 34546597 G A SLC12A6 Missense_Mutation p.A357V 0.39 deleterious(0) possibly_damaging(0.843) TCGA-78-7148-01 15 42714782 42714782 G A ZNF106 Missense_Mutation p.H1741Y 0.28 deleterious(0) probably_damaging(0.998) TCGA-78-7148-01 15 50595319 50595319 T C GABPB1 Missense_Mutation p.H93R 0.53 deleterious(0.03) probably_damaging(0.977) TCGA-78-7148-01 15 69692415 69692415 C T PAQR5 Silent p.L238L 0.12 TCGA-78-7148-01 15 78921352 78921352 C T CHRNB4 Missense_Mutation p.S432N 0.26 tolerated(0.08) benign(0.015) TCGA-78-7148-01 15 86122780 86122780 G T AKAP13 Missense_Mutation p.W494L 0.37 tolerated_low_confidence(0.14) benign(0) TCGA-78-7148-01 15 86702217 86702217 G C AGBL1 Missense_Mutation p.V104L 0.25 tolerated(0.17) benign(0.098) TCGA-78-7148-01 15 89398733 89398733 C A ACAN Missense_Mutation p.L973I 0.35 tolerated(0.37) benign(0.145) TCGA-78-7148-01 15 99828072 99828072 G A LRRC28 Missense_Mutation p.E101K 0.24 tolerated(0.19) benign(0.004) TCGA-78-7148-01 15 99828097 99828097 G T LRRC28 Missense_Mutation p.R109L 0.19 deleterious(0.03) benign(0.131) TCGA-78-7148-01 16 17294340 17294340 T G XYLT1 Missense_Mutation p.K362T 0.06 tolerated(0.05) probably_damaging(0.911) TCGA-78-7148-01 16 223583 223583 C T HBA2 Missense_Mutation p.T138I 0.23 deleterious(0.04) benign(0.078) TCGA-78-7148-01 16 30793208 30793208 C A ZNF629 Missense_Mutation p.G814V 0.29 tolerated(0.35) benign(0.002) TCGA-78-7148-01 16 34739677 34739677 A C RP11-80F22.15 RNA 0.50 TCGA-78-7148-01 16 49671140 49671140 G C ZNF423 Missense_Mutation p.F641L 0.08 deleterious(0.01) possibly_damaging(0.506) TCGA-78-7148-01 16 57416636 57416636 A T CX3CL1 Missense_Mutation p.T296S 0.11 tolerated(0.31) benign(0.025) TCGA-78-7148-01 16 9923360 9923360 C T GRIN2A Missense_Mutation p.A643T 0.25 deleterious(0.01) probably_damaging(1) TCGA-78-7148-01 17 10427153 10427153 G T MYH2 Missense_Mutation p.Q1742K 0.06 deleterious(0.05) benign(0.091) TCGA-78-7148-01 17 10432354 10432354 C A MYH2 Missense_Mutation p.A1133S 0.22 tolerated(0.06) benign(0.072) TCGA-78-7148-01 17 10536009 10536009 C A MYH3 Missense_Mutation p.K1580N 0.06 deleterious(0.01) possibly_damaging(0.796) TCGA-78-7148-01 17 16593728 16593728 G T CCDC144A Missense_Mutation p.G5V 0.24 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-78-7148-01 17 26966412 26966412 C T KIAA0100 Missense_Mutation p.E384K 0.37 deleterious(0.01) probably_damaging(0.914) TCGA-78-7148-01 17 29326234 29326234 G T RNF135 3'UTR 0.13 TCGA-78-7148-01 17 34340812 34340812 T A CCL23 Missense_Mutation p.N92Y 0.45 deleterious(0) possibly_damaging(0.491) TCGA-78-7148-01 17 37296019 37296019 G C PLXDC1 Missense_Mutation p.A48G 0.45 tolerated(0.32) benign(0.159) TCGA-78-7148-01 17 56400737 56400737 C A BZRAP1 Silent p.S342S 0.08 TCGA-78-7148-01 17 80042140 80042140 G A FASN Missense_Mutation p.P1630L 0.42 tolerated(0.23) benign(0.03) TCGA-78-7148-01 17 80051597 80051597 C A FASN Missense_Mutation p.V111L 0.27 tolerated(0.12) benign(0.023) TCGA-78-7148-01 18 20572830 20572830 C T RBBP8 Missense_Mutation p.S347F 0.26 deleterious(0) probably_damaging(0.979) TCGA-78-7148-01 18 31323767 31323767 G T ASXL3 Missense_Mutation p.D1319Y 0.35 possibly_damaging(0.907) TCGA-78-7148-01 18 34298499 34298499 A G FHOD3 Missense_Mutation p.T905A 0.25 tolerated(0.82) benign(0.001) TCGA-78-7148-01 18 43329927 43329927 C G SLC14A1 3'UTR 0.33 TCGA-78-7148-01 18 64202248 64202248 G T CDH19 Missense_Mutation p.N437K 0.37 deleterious(0) probably_damaging(1) TCGA-78-7148-01 19 10577915 10577915 C T PDE4A Missense_Mutation p.S760L 0.08 tolerated_low_confidence(0.56) benign(0.001) TCGA-78-7148-01 19 11141507 11141507 G T SMARCA4 Missense_Mutation p.G1162C 0.58 probably_damaging(1) TCGA-78-7148-01 19 1221270 1221279 GAGAACATCG - STK11 Frame_Shift_Del p.E265Gfs*19 0.43 TCGA-78-7148-01 19 17653058 17653058 G T FAM129C Silent p.L459L 0.09 TCGA-78-7148-01 19 36279099 36279099 G A ARHGAP33 Missense_Mutation p.R1050Q 0.06 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-78-7148-01 19 39734506 39734506 G T IFNL3 Silent p.R150R 0.19 TCGA-78-7148-01 19 39735475 39735475 G A IFNL3 Silent p.L45L 0.29 TCGA-78-7148-01 19 44680673 44680673 A G ZNF226 Missense_Mutation p.K420E 0.32 deleterious(0.04) possibly_damaging(0.685) TCGA-78-7148-01 19 48183951 48183951 G T GLTSCR1 Missense_Mutation p.Q508H 0.50 unknown(0) TCGA-78-7148-01 19 51017748 51017748 C T ASPDH 5'Flank 0.31 TCGA-78-7148-01 19 51506358 51506358 C G KLK9 3'UTR 0.20 TCGA-78-7148-01 19 53950521 53950521 G C ZNF761 RNA 0.26 TCGA-78-7148-01 19 54312855 54312855 C A NLRP12 Silent p.T686T 0.21 TCGA-78-7148-01 19 54656017 54656017 T C CNOT3 Missense_Mutation p.S554P 0.30 deleterious(0.05) benign(0.307) TCGA-78-7148-01 19 55085802 55085802 A T LILRA2 Silent p.P35P 0.04 TCGA-78-7148-01 19 55713663 55713663 A G PTPRH Missense_Mutation p.V305A 0.27 benign(0.267) TCGA-78-7148-01 19 55798406 55798406 G T BRSK1 Silent p.T56T 0.08 TCGA-78-7148-01 19 56704114 56704114 A T ZSCAN5B Nonsense_Mutation p.L103* 0.08 TCGA-78-7148-01 19 58187634 58187634 G T ZSCAN4 Nonsense_Mutation p.E41* 0.25 TCGA-78-7148-01 19 58490705 58490705 C G ZNF606 Missense_Mutation p.R448P 0.18 deleterious(0) probably_damaging(1) TCGA-78-7148-01 19 6712321 6712321 C G C3 Missense_Mutation p.V406L 0.56 tolerated(0.32) benign(0.003) TCGA-78-7148-01 1 100544036 100544037 CC - HIAT1 Frame_Shift_Del p.A345Dfs*3 0.09 TCGA-78-7148-01 1 110293370 110293370 C T EPS8L3 Missense_Mutation p.R562H 0.43 tolerated(1) benign(0.002) TCGA-78-7148-01 1 113460446 113460446 G A SLC16A1 Silent p.L194L 0.52 TCGA-78-7148-01 1 11591064 11591064 C T PTCHD2 Missense_Mutation p.P1068L 0.35 deleterious(0.01) benign(0.308) TCGA-78-7148-01 1 120165529 120165529 C T ZNF697 Silent p.T479T 0.71 TCGA-78-7148-01 1 120266064 120266064 G T PHGDH Missense_Mutation p.R119M 0.33 deleterious(0) probably_damaging(1) TCGA-78-7148-01 1 152552345 152552345 G T LCE3D Missense_Mutation p.P23Q 0.05 tolerated_low_confidence(0.07) unknown(0) TCGA-78-7148-01 1 152659578 152659578 C T LCE2B Nonsense_Mutation p.Q87* 0.26 TCGA-78-7148-01 1 153177365 153177365 G A LELP1 Missense_Mutation p.C61Y 0.35 deleterious_low_confidence(0.04) unknown(0) TCGA-78-7148-01 1 156622210 156622210 G A BCAN Missense_Mutation p.G490S 0.16 tolerated(0.76) benign(0.033) TCGA-78-7148-01 1 157765824 157765824 A G FCRL1 3'UTR 0.32 TCGA-78-7148-01 1 158326366 158326366 G A CD1E Missense_Mutation p.R328Q 0.17 tolerated(0.07) benign(0.057) TCGA-78-7148-01 1 158326382 158326382 G C CD1E Splice_Site p.X333_splice 0.20 TCGA-78-7148-01 1 158590209 158590209 G C SPTA1 Missense_Mutation p.N2056K 0.29 deleterious(0) probably_damaging(1) TCGA-78-7148-01 1 165182882 165182882 C A LMX1A Missense_Mutation p.R222M 0.26 deleterious(0) probably_damaging(0.972) TCGA-78-7148-01 1 170955788 170955788 C A MROH9 Silent p.I272I 0.28 TCGA-78-7148-01 1 175365760 175365760 G T TNR Missense_Mutation p.P387Q 0.30 deleterious(0) probably_damaging(0.991) TCGA-78-7148-01 1 178861370 178861370 G T RALGPS2 Missense_Mutation p.R418I 0.26 tolerated(0.05) benign(0.382) TCGA-78-7148-01 1 190067160 190067160 T C BRINP3 Silent p.K763K 0.08 TCGA-78-7148-01 1 202702680 202702680 C T KDM5B Missense_Mutation p.R1253Q 0.07 tolerated(1) benign(0.149) TCGA-78-7148-01 1 205053413 205053413 G C TMEM81 Missense_Mutation p.S12R 0.20 tolerated(0.16) benign(0.01) TCGA-78-7148-01 1 216390757 216390757 A T USH2A Missense_Mutation p.D1043E 0.28 probably_damaging(0.991) TCGA-78-7148-01 1 223178804 223178804 T C DISP1 Silent p.F1355F 0.33 TCGA-78-7148-01 1 225155417 225155417 A C DNAH14 Intron 0.24 TCGA-78-7148-01 1 234606997 234606997 C T TARBP1 Missense_Mutation p.V346I 0.37 deleterious(0.01) probably_damaging(0.996) TCGA-78-7148-01 1 236902780 236902780 T A ACTN2 Missense_Mutation p.L352Q 0.20 deleterious(0) probably_damaging(0.996) TCGA-78-7148-01 1 237947539 237947539 T C RYR2 Missense_Mutation p.V4176A 0.27 probably_damaging(0.995) TCGA-78-7148-01 1 238090355 238090355 G T RP11-193H5.1 RNA 0.14 TCGA-78-7148-01 1 247875407 247875407 G T OR6F1 Silent p.S217S 0.33 TCGA-78-7148-01 1 28316211 28316211 G C EYA3 Missense_Mutation p.S472C 0.40 deleterious(0) probably_damaging(0.998) TCGA-78-7148-01 1 29442314 29442314 A G EPB41 Intron 0.35 TCGA-78-7148-01 1 35370403 35370403 G T DLGAP3 Missense_Mutation p.D194E 0.47 tolerated(1) benign(0.001) TCGA-78-7148-01 1 40705790 40705790 A T RLF Missense_Mutation p.N1806Y 0.12 tolerated(0.35) benign(0.073) TCGA-78-7148-01 1 45501863 45501863 C A ZSWIM5 Missense_Mutation p.G668V 0.39 deleterious(0) unknown(0) TCGA-78-7148-01 20 1532359 1532359 C A SIRPD Silent p.R133R 0.29 TCGA-78-7148-01 20 1532360 1532360 C A SIRPD Missense_Mutation p.R133L 0.29 tolerated(0.09) benign(0.365) TCGA-78-7148-01 20 37356572 37356572 C A SLC32A1 Missense_Mutation p.R290S 0.35 tolerated(0.59) benign(0.154) TCGA-78-7148-01 20 43850431 43850431 A G SEMG2 Missense_Mutation p.D53G 0.30 tolerated(0.66) benign(0.001) TCGA-78-7148-01 20 44806656 44806656 G T CDH22 Missense_Mutation p.A615D 0.19 deleterious(0) probably_damaging(0.997) TCGA-78-7148-01 20 49621081 49621081 C T KCNG1 Missense_Mutation p.R346Q 0.50 deleterious(0) probably_damaging(0.999) TCGA-78-7148-01 20 50329578 50329578 C A ATP9A Silent p.A121A 0.22 TCGA-78-7148-01 20 58569452 58569452 C T CDH26 Missense_Mutation p.P525L 0.09 tolerated(0.16) benign(0.004) TCGA-78-7148-01 21 30255392 30255392 C G N6AMT1 Missense_Mutation p.V46L 0.38 benign(0.014) TCGA-78-7148-01 21 32493002 32493002 T C TIAM1 Missense_Mutation p.Q1487R 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-78-7148-01 22 18389298 18389318 ACAGGAGCAAAGCTTACCTTG - MICAL3 Splice_Site p.X87_splice 0.23 TCGA-78-7148-01 22 18918540 18918540 C A PRODH Missense_Mutation p.D149Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-78-7148-01 22 29445929 29445929 G T ZNRF3 Missense_Mutation p.R587L 0.19 deleterious(0) probably_damaging(0.999) TCGA-78-7148-01 22 36122751 36122751 T C APOL5 Silent p.H212H 0.24 TCGA-78-7148-01 22 36912753 36912753 G A EIF3D Missense_Mutation p.R359C 0.05 deleterious(0) probably_damaging(0.998) TCGA-78-7148-01 22 43614412 43614412 G T SCUBE1 Silent p.A580A 0.46 TCGA-78-7148-01 22 43616542 43616542 C A SCUBE1 Missense_Mutation p.R534M 0.17 tolerated(0.13) possibly_damaging(0.757) TCGA-78-7148-01 22 51160827 51160827 G T SHANK3 Silent p.L1538L 0.29 TCGA-78-7148-01 2 120734651 120734651 G T PTPN4 3'UTR 0.24 TCGA-78-7148-01 2 128409091 128409091 A T GPR17 Missense_Mutation p.H289L 0.34 tolerated(0.64) benign(0.004) TCGA-78-7148-01 2 130738011 130738011 T C RAB6C Missense_Mutation p.I108T 0.10 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-78-7148-01 2 144709595 144709595 T - GTDC1 Frame_Shift_Del p.Q416Rfs*10 0.27 TCGA-78-7148-01 2 159533379 159533379 G T PKP4 Missense_Mutation p.G1086C 0.39 deleterious(0.01) probably_damaging(0.991) TCGA-78-7148-01 2 168074801 168074801 A G XIRP2 Silent p.R283R 0.14 TCGA-78-7148-01 2 179578033 179578033 A G TTN Missense_Mutation p.V8943A 0.27 TCGA-78-7148-01 2 190619958 190619958 A T OSGEPL1 Missense_Mutation p.S184T 0.55 tolerated(0.18) benign(0.206) TCGA-78-7148-01 2 209309504 209309504 A G PTH2R Missense_Mutation p.T249A 0.07 deleterious(0.05) possibly_damaging(0.877) TCGA-78-7148-01 2 212248356 212248356 C A ERBB4 Missense_Mutation p.R1304L 0.21 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-78-7148-01 2 219249930 219249930 C T SLC11A1 Missense_Mutation p.R112C 0.05 deleterious(0) probably_damaging(1) TCGA-78-7148-01 2 219510891 219510891 T C ZNF142 Intron 0.24 TCGA-78-7148-01 2 220162011 220162011 A G PTPRN Missense_Mutation p.W678R 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-78-7148-01 2 241569575 241569575 T G GPR35 Missense_Mutation p.L100R 0.39 deleterious(0) probably_damaging(0.999) TCGA-78-7148-01 2 29295617 29295617 G T C2orf71 Missense_Mutation p.A504D 0.25 tolerated(0.33) benign(0.026) TCGA-78-7148-01 2 72360433 72360433 C G CYP26B1 Missense_Mutation p.G289R 0.33 tolerated(0.06) possibly_damaging(0.768) TCGA-78-7148-01 2 73461511 73461511 T A CCT7 Missense_Mutation p.M2K 0.38 deleterious(0) benign(0.066) TCGA-78-7148-01 2 80530196 80530196 C A LRRTM1 Missense_Mutation p.S250I 0.17 tolerated(0.06) benign(0.188) TCGA-78-7148-01 3 119886746 119886746 C A GPR156 Missense_Mutation p.R526S 0.34 tolerated(0.69) benign(0.05) TCGA-78-7148-01 3 122044127 122044127 G A CSTA 5'UTR 0.07 TCGA-78-7148-01 3 126423156 126423156 A C CHCHD6 Translation_Start_Site p.M1? 0.24 deleterious(0) probably_damaging(0.97) TCGA-78-7148-01 3 127395174 127395174 G A ABTB1 Missense_Mutation p.R127Q 0.19 tolerated(0.65) benign(0.009) TCGA-78-7148-01 3 12856747 12856747 G C CAND2 Missense_Mutation p.D372H 0.10 deleterious(0.01) benign(0.106) TCGA-78-7148-01 3 164732923 164732923 A G SI Silent p.I1329I 0.45 TCGA-78-7148-01 3 187449674 187449674 A G BCL6 Missense_Mutation p.L69P 0.11 deleterious(0) probably_damaging(0.947) TCGA-78-7148-01 3 193082037 193082037 C G ATP13A5 Silent p.R32R 0.20 TCGA-78-7148-01 3 38938351 38938351 C A SCN11A Silent p.V796V 0.44 TCGA-78-7148-01 3 77607285 77607285 G T ROBO2 Missense_Mutation p.Q490H 0.15 tolerated(0.18) possibly_damaging(0.522) TCGA-78-7148-01 3 97251210 97251210 G - EPHA6 Frame_Shift_Del p.G737Efs*8 0.11 TCGA-78-7148-01 3 9975223 9975223 G T IL17RC Silent p.A774A 0.47 TCGA-78-7148-01 4 104116363 104116363 C A CENPE Missense_Mutation p.V129L 0.42 probably_damaging(0.997) TCGA-78-7148-01 4 107168317 107168317 C A TBCK Missense_Mutation p.D304Y 0.20 tolerated(0.11) benign(0.009) TCGA-78-7148-01 4 175899205 175899205 G C ADAM29 3'UTR 0.45 TCGA-78-7148-01 4 186544274 186544274 G A SORBS2 Missense_Mutation p.P866L 0.05 deleterious(0) probably_damaging(0.999) TCGA-78-7148-01 4 187524999 187524999 C A FAT1 Missense_Mutation p.G3561C 0.27 probably_damaging(1) TCGA-78-7148-01 4 39291518 39291518 G A RFC1 Nonsense_Mutation p.Q1105* 0.18 TCGA-78-7148-01 4 46930594 46930594 C T GABRA4 Missense_Mutation p.R438H 0.06 tolerated_low_confidence(0.09) benign(0.003) TCGA-78-7148-01 4 57344766 57344766 A T SRP72 Missense_Mutation p.D259V 0.34 deleterious(0) probably_damaging(1) TCGA-78-7148-01 4 68436850 68436850 T A STAP1 Missense_Mutation p.Y57N 0.25 deleterious(0) probably_damaging(0.981) TCGA-78-7148-01 4 96163625 96163625 G T UNC5C Missense_Mutation p.L355I 0.35 tolerated(0.19) benign(0.1) TCGA-78-7148-01 4 96469940 96469940 G T UNC5C Silent p.L23L 0.35 TCGA-78-7148-01 4 9982247 9982247 T A SLC2A9 Missense_Mutation p.Q217L 0.42 deleterious(0.01) possibly_damaging(0.786) TCGA-78-7148-01 5 127666351 127666351 C A FBN2 Missense_Mutation p.S1420I 0.13 deleterious(0.02) benign(0.3) TCGA-78-7148-01 5 140563531 140563531 C A PCDHB16 Missense_Mutation p.P466H 0.08 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-78-7148-01 5 146070757 146070757 T A PPP2R2B Silent p.P130P 0.35 TCGA-78-7148-01 5 156589500 156589500 G C FAM71B Silent p.S592S 0.29 TCGA-78-7148-01 5 161576310 161576310 G T GABRG2 Missense_Mutation p.K413N 0.13 tolerated(0.44) possibly_damaging(0.69) TCGA-78-7148-01 5 167589629 167589629 C A TENM2 Missense_Mutation p.D812E 0.32 deleterious(0.01) benign(0.194) TCGA-78-7148-01 5 180687006 180687006 T C TRIM52 Missense_Mutation p.Y270C 0.25 deleterious(0.02) benign(0.112) TCGA-78-7148-01 5 19473781 19473781 G A CDH18 Missense_Mutation p.P643S 0.06 tolerated(0.07) probably_damaging(0.999) TCGA-78-7148-01 5 21751882 21751882 G A CDH12 Silent p.G783G 0.06 TCGA-78-7148-01 5 43280133 43280133 A G NIM1K Missense_Mutation p.T205A 0.28 tolerated(0.33) benign(0.007) TCGA-78-7148-01 5 45645551 45645551 C A HCN1 Missense_Mutation p.R195S 0.29 deleterious(0) probably_damaging(0.994) TCGA-78-7148-01 5 73931234 73931234 C A ENC1 Missense_Mutation p.W359C 0.37 deleterious(0) probably_damaging(1) TCGA-78-7148-01 5 79025142 79025142 A G CMYA5 Missense_Mutation p.Y185C 0.32 benign(0.068) TCGA-78-7148-01 6 10911057 10911057 G T SYCP2L Missense_Mutation p.R291S 0.20 deleterious(0.02) possibly_damaging(0.604) TCGA-78-7148-01 6 12161872 12161872 G A HIVEP1 Missense_Mutation p.E2230K 0.43 deleterious(0.01) probably_damaging(0.97) TCGA-78-7148-01 6 131924232 131924232 G A MED23 Silent p.L623L 0.32 TCGA-78-7148-01 6 167721398 167721398 G T UNC93A Missense_Mutation p.A370S 0.28 tolerated(0.12) benign(0.142) TCGA-78-7148-01 6 167721399 167721399 G T UNC93A Splice_Site p.X370_splice 0.28 TCGA-78-7148-01 6 26377352 26377352 G T BTN3A2 3'UTR 0.26 TCGA-78-7148-01 6 32169149 32169149 G A NOTCH4 Missense_Mutation p.P1295L 0.30 deleterious(0.04) probably_damaging(0.999) TCGA-78-7148-01 6 56483722 56483722 G C DST Intron 0.35 TCGA-78-7148-01 6 56501375 56501375 C T DST Missense_Mutation p.E477K 0.05 benign(0.207) TCGA-78-7148-01 6 70942411 70942411 C A COL9A1 Missense_Mutation p.G793V 0.23 probably_damaging(1) TCGA-78-7148-01 6 74228319 74228319 G A EEF1A1 Missense_Mutation p.P263S 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-78-7148-01 6 79735767 79735767 T C PHIP Missense_Mutation p.M239V 0.33 deleterious(0) possibly_damaging(0.762) TCGA-78-7148-01 6 87965604 87965604 A G ZNF292 Missense_Mutation p.I753V 0.25 deleterious(0) possibly_damaging(0.562) TCGA-78-7148-01 7 100679577 100679577 G T MUC17 Missense_Mutation p.S1627I 0.22 unknown(0) TCGA-78-7148-01 7 112407566 112407566 C G TMEM168 Missense_Mutation p.E594Q 0.29 deleterious(0.03) possibly_damaging(0.553) TCGA-78-7148-01 7 131913138 131913138 G T PLXNA4 Silent p.P565P 0.12 TCGA-78-7148-01 7 132192477 132192477 G C PLXNA4 Missense_Mutation p.L326V 0.38 deleterious(0) probably_damaging(0.936) TCGA-78-7148-01 7 142561001 142561001 G T EPHB6 Missense_Mutation p.A6S 0.11 deleterious_low_confidence(0.02) benign(0.022) TCGA-78-7148-01 7 146825897 146825897 C A CNTNAP2 Missense_Mutation p.A351D 0.21 deleterious(0) benign(0.109) TCGA-78-7148-01 7 20441744 20441744 G T ITGB8 Missense_Mutation p.C561F 0.33 deleterious(0) probably_damaging(1) TCGA-78-7148-01 7 27213368 27213368 G T HOXA10 Silent p.A186A 0.32 TCGA-78-7148-01 7 38500890 38500890 G T AMPH Missense_Mutation p.P337H 0.36 deleterious(0) probably_damaging(0.999) TCGA-78-7148-01 7 40277289 40277289 G C SUGCT Silent p.S187S 0.23 TCGA-78-7148-01 7 47436483 47436483 T C TNS3 Missense_Mutation p.N313S 0.06 tolerated(0.05) benign(0.052) TCGA-78-7148-01 7 53103448 53103448 C A POM121L12 Silent p.A28A 0.31 TCGA-78-7148-01 7 53103449 53103449 C A POM121L12 Missense_Mutation p.L29M 0.31 tolerated(0.19) probably_damaging(0.934) TCGA-78-7148-01 7 84628952 84628952 T C SEMA3D Missense_Mutation p.Y713C 0.28 deleterious(0) probably_damaging(0.999) TCGA-78-7148-01 8 100829872 100829872 G A VPS13B Silent p.R2759R 0.32 TCGA-78-7148-01 8 122641356 122641356 T C HAS2 Silent p.L75L 0.15 TCGA-78-7148-01 8 20110819 20110819 C - LZTS1 Frame_Shift_Del p.G208Afs*17 0.35 TCGA-78-7148-01 8 37756794 37756794 C A RAB11FIP1 Missense_Mutation p.V56L 0.24 deleterious(0) probably_damaging(0.955) TCGA-78-7148-01 8 70744733 70744733 G T SLCO5A1 Missense_Mutation p.P59Q 0.23 tolerated_low_confidence(0.15) benign(0.005) TCGA-78-7148-01 8 73849655 73849655 A T KCNB2 Missense_Mutation p.S689C 0.35 deleterious_low_confidence(0.05) benign(0.423) TCGA-78-7148-01 8 7680915 7680915 G T DEFB105A Missense_Mutation p.P34Q 0.28 tolerated(0.17) possibly_damaging(0.543) TCGA-78-7148-01 8 77776363 77776363 C A ZFHX4 Missense_Mutation p.H3471Q 0.32 probably_damaging(0.974) TCGA-78-7148-01 8 86025216 86025216 A G LRRCC1 Silent p.L142L 0.45 TCGA-78-7148-01 8 95392404 95392404 T G RAD54B Missense_Mutation p.D739A 0.39 deleterious(0) probably_damaging(0.999) TCGA-78-7148-01 8 99142321 99142321 G A POP1 Nonsense_Mutation p.W201* 0.42 TCGA-78-7148-01 9 101014106 101014106 C A TBC1D2 Missense_Mutation p.A158S 0.10 tolerated(0.56) benign(0.037) TCGA-78-7148-01 9 128000949 128000949 G C HSPA5 Missense_Mutation p.S385C 0.60 tolerated_low_confidence(0.11) benign(0.058) TCGA-78-7148-01 9 133986984 133986984 G T AIF1L Nonsense_Mutation p.E58* 0.39 TCGA-78-7148-01 9 139391157 139391157 C A NOTCH1 Missense_Mutation p.G2345V 0.10 deleterious(0.03) benign(0.119) TCGA-78-7148-01 9 21974782 21974783 - GA CDKN2A Frame_Shift_Ins p.W15Cfs*12 0.25 TCGA-78-7148-01 9 72055918 72055918 A G APBA1 Silent p.N765N 0.12 TCGA-78-7148-01 9 79267540 79267540 G C PRUNE2 Missense_Mutation p.P2806A 0.43 deleterious(0) probably_damaging(0.993) TCGA-78-7148-01 9 93375418 93375418 G C DIRAS2 3'UTR 0.46 TCGA-78-7148-01 9 95609868 95609871 TACT - ZNF484 Frame_Shift_Del p.S402Cfs*167 0.46 TCGA-78-7148-01 X 104464957 104464957 G T TEX13A Missense_Mutation p.S42Y 0.34 deleterious(0) probably_damaging(0.993) TCGA-78-7148-01 X 107418907 107418907 C A COL4A6 Missense_Mutation p.R937L 0.86 possibly_damaging(0.494) TCGA-78-7148-01 X 110654013 110654013 G A DCX Missense_Mutation p.P64S 0.09 tolerated_low_confidence(0.08) benign(0.021) TCGA-78-7148-01 X 132160640 132160640 G T USP26 Missense_Mutation p.Q537K 0.53 deleterious(0.03) benign(0.171) TCGA-78-7148-01 X 148664879 148664879 T C MAGEA9B 5'UTR 0.19 TCGA-78-7148-01 X 20148716 20148716 T C EIF1AX Missense_Mutation p.N116S 0.78 tolerated(0.07) benign(0.042) TCGA-78-7148-01 X 27999035 27999035 C T DCAF8L1 Silent p.L139L 0.53 TCGA-78-7148-01 X 37028396 37028396 G A FAM47C Missense_Mutation p.R638Q 0.56 tolerated(0.18) benign(0.005) TCGA-78-7148-01 X 47034417 47034417 G A RBM10 Splice_Site p.X168_splice 0.72 TCGA-78-7148-01 X 54781507 54781507 G T ITIH6 Missense_Mutation p.L1049M 0.73 deleterious(0.02) possibly_damaging(0.459) TCGA-78-7148-01 X 595382 595382 G A SHOX Missense_Mutation p.D103N 0.40 tolerated(0.05) benign(0.064) TCGA-78-7148-01 X 64749694 64749694 C A LAS1L Silent p.L193L 0.56 TCGA-78-7148-01 X 69890292 69890292 G A TEX11 Silent p.L454L 0.87 TCGA-78-7148-01 X 76891476 76891476 T C ATRX Silent p.E1543E 0.57 TCGA-78-7149-01 10 102300398 102300398 C A HIF1AN Missense_Mutation p.L146M 0.03 deleterious(0.05) probably_damaging(0.959) TCGA-78-7149-01 10 106802863 106802863 C G SORCS3 Silent p.R335R 0.38 TCGA-78-7149-01 10 120354367 120354367 G A PRLHR Silent p.G130G 0.30 TCGA-78-7149-01 10 21120446 21120446 G C NEBL Missense_Mutation p.L506V 0.04 tolerated(0.15) benign(0.026) TCGA-78-7149-01 10 46122313 46122313 C G ZFAND4 Missense_Mutation p.D320H 0.11 deleterious(0.01) benign(0.192) TCGA-78-7149-01 10 6157223 6157223 G A RBM17 Missense_Mutation p.E351K 0.10 deleterious(0.01) benign(0.382) TCGA-78-7149-01 10 73056370 73056370 G A UNC5B Silent p.Q787Q 0.05 TCGA-78-7149-01 10 79580869 79580869 G C DLG5 Missense_Mutation p.P1125A 0.06 deleterious(0.01) benign(0.046) TCGA-78-7149-01 10 97388160 97388160 T A ALDH18A1 Nonsense_Mutation p.K300* 0.35 TCGA-78-7149-01 10 99968718 99968718 G C R3HCC1L Missense_Mutation p.D283H 0.17 deleterious(0) probably_damaging(0.996) TCGA-78-7149-01 10 99968962 99968962 G C R3HCC1L Missense_Mutation p.G364A 0.17 deleterious(0.02) benign(0.304) TCGA-78-7149-01 11 121000388 121000388 G - TECTA Frame_Shift_Del p.K805Sfs*19 0.24 TCGA-78-7149-01 11 123901033 123901033 G C OR10G8 Missense_Mutation p.R235T 0.25 deleterious(0) probably_damaging(0.948) TCGA-78-7149-01 11 125887079 125887079 C T CDON Missense_Mutation p.D278N 0.35 tolerated(0.13) benign(0.292) TCGA-78-7149-01 11 56409829 56409829 T A OR5AP2 Silent p.L29L 0.14 TCGA-78-7149-01 11 62286885 62286885 C A AHNAK Nonsense_Mutation p.E5002* 0.20 TCGA-78-7149-01 11 65790439 65790439 C T CATSPER1 Missense_Mutation p.R437Q 0.22 tolerated(0.18) benign(0.362) TCGA-78-7149-01 11 77705651 77705651 G A INTS4 Silent p.F13F 0.18 TCGA-78-7149-01 11 92087428 92087428 C G FAT3 Nonsense_Mutation p.S717* 0.04 TCGA-78-7149-01 11 92531712 92531712 G T FAT3 Missense_Mutation p.A1845S 0.40 benign(0.041) TCGA-78-7149-01 12 106632898 106632898 C T CKAP4 Silent p.E571E 0.04 TCGA-78-7149-01 12 110777138 110777138 G A ATP2A2 Missense_Mutation p.R491K 0.15 deleterious(0) probably_damaging(0.997) TCGA-78-7149-01 12 120128116 120128116 C A CIT Missense_Mutation p.R2009L 0.11 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-78-7149-01 12 132547172 132547172 C T EP400 Nonsense_Mutation p.Q2754* 0.17 TCGA-78-7149-01 12 14774061 14774061 G A GUCY2C Silent p.A897A 0.24 TCGA-78-7149-01 12 280452 280452 C G IQSEC3 Intron 0.22 TCGA-78-7149-01 12 54428155 54428155 G A HOXC5 Missense_Mutation p.R183H 0.17 deleterious(0) probably_damaging(0.998) TCGA-78-7149-01 12 56563471 56563471 C G SMARCC2 Missense_Mutation p.E822Q 0.07 tolerated(0.09) benign(0.403) TCGA-78-7149-01 12 7014909 7014909 G C LRRC23 Missense_Mutation p.E38Q 0.19 tolerated(0.06) unknown(0) TCGA-78-7149-01 12 7015723 7015726 GATG AAT LRRC23 Frame_Shift_Del p.M130Ifs*31 0.08 TCGA-78-7149-01 12 81110745 81110745 G T MYF5 5'UTR 0.27 TCGA-78-7149-01 12 8192436 8192436 C T FOXJ2 Missense_Mutation p.S3F 0.08 deleterious(0) probably_damaging(0.982) TCGA-78-7149-01 12 91347524 91347524 C G CCER1 Missense_Mutation p.E332D 0.42 tolerated(0.52) unknown(0) TCGA-78-7149-01 12 968524 968524 G T WNK1 Missense_Mutation p.R505L 0.15 deleterious(0.01) unknown(0) TCGA-78-7149-01 13 113975949 113975949 G T LAMP1 Nonsense_Mutation p.E341* 0.15 TCGA-78-7149-01 13 46054293 46054293 G A COG3 Silent p.E139E 0.28 TCGA-78-7149-01 14 105411807 105411807 G C AHNAK2 Missense_Mutation p.I3327M 0.14 benign(0.009) TCGA-78-7149-01 14 105415472 105415472 C A AHNAK2 Nonsense_Mutation p.E2106* 0.71 TCGA-78-7149-01 14 64006338 64006338 G A PPP2R5E Silent p.V22V 0.35 TCGA-78-7149-01 15 29346847 29346847 C A APBA2 Missense_Mutation p.P254T 0.35 tolerated_low_confidence(0.33) benign(0.001) TCGA-78-7149-01 15 41812941 41812941 C A RPAP1 Missense_Mutation p.W1148L 0.36 tolerated(0.53) benign(0.002) TCGA-78-7149-01 15 56126273 56126273 T C NEDD4 Missense_Mutation p.Y1145C 0.35 deleterious(0) probably_damaging(1) TCGA-78-7149-01 15 62211643 62211643 G C VPS13C Missense_Mutation p.H2495D 0.17 tolerated(0.6) benign(0.028) TCGA-78-7149-01 15 70968880 70968880 T A UACA Missense_Mutation p.E361D 0.38 deleterious(0.02) probably_damaging(0.955) TCGA-78-7149-01 15 74710606 74710606 C T SEMA7A Intron 0.09 TCGA-78-7149-01 15 77329395 77329395 G A PSTPIP1 Missense_Mutation p.E377K 0.06 deleterious(0) probably_damaging(0.989) TCGA-78-7149-01 15 77769946 77769946 C T HMG20A Missense_Mutation p.T222I 0.27 deleterious(0) probably_damaging(0.993) TCGA-78-7149-01 15 86807741 86807741 C T AGBL1 Missense_Mutation p.L401F 0.16 tolerated(0.46) benign(0.01) TCGA-78-7149-01 16 17235050 17235050 T C XYLT1 Missense_Mutation p.K516R 0.13 tolerated(0.43) benign(0.309) TCGA-78-7149-01 16 2159023 2159023 C T PKD1 Missense_Mutation p.E2049K 0.12 benign(0.012) TCGA-78-7149-01 16 30749478 30749478 C A SRCAP Nonsense_Mutation p.S2706* 0.09 TCGA-78-7149-01 16 31144086 31144086 G C PRSS8 Missense_Mutation p.P152R 0.09 deleterious(0) probably_damaging(1) TCGA-78-7149-01 16 58031380 58031380 C T ZNF319 Missense_Mutation p.E264K 0.22 tolerated(0.18) possibly_damaging(0.879) TCGA-78-7149-01 16 61851435 61851435 C A CDH8 Missense_Mutation p.V409L 0.16 tolerated(0.74) benign(0.355) TCGA-78-7149-01 16 67304692 67304692 G A SLC9A5 Missense_Mutation p.C757Y 0.45 tolerated(0.33) benign(0.271) TCGA-78-7149-01 16 71683003 71683003 G A PHLPP2 Silent p.L1254L 0.41 TCGA-78-7149-01 16 71683851 71683851 G A PHLPP2 Missense_Mutation p.P972S 0.39 tolerated(0.27) benign(0.006) TCGA-78-7149-01 16 77465424 77465424 C A ADAMTS18 Missense_Mutation p.R88L 0.39 deleterious(0) probably_damaging(0.999) TCGA-78-7149-01 16 840384 840384 C G CHTF18 Nonsense_Mutation p.S246* 0.11 TCGA-78-7149-01 17 11532805 11532805 T C DNAH9 Silent p.A474A 0.34 TCGA-78-7149-01 17 27031336 27031336 G C PROCA1 Missense_Mutation p.F115L 0.29 deleterious(0.05) benign(0.269) TCGA-78-7149-01 17 28435021 28435021 G A EFCAB5 Silent p.G1497G 0.35 TCGA-78-7149-01 17 39912446 39912446 G A JUP Silent p.I689I 0.07 TCGA-78-7149-01 17 41020044 41020044 A CG AOC4P RNA 0.17 TCGA-78-7149-01 17 5436173 5436173 C T NLRP1 Missense_Mutation p.E1089K 0.16 tolerated(0.11) possibly_damaging(0.562) TCGA-78-7149-01 17 67148250 67148250 G A ABCA10 Missense_Mutation p.P1444L 0.04 tolerated(0.54) benign(0.005) TCGA-78-7149-01 17 74901366 74901366 C T MGAT5B Missense_Mutation p.A280V 0.32 tolerated(0.17) possibly_damaging(0.786) TCGA-78-7149-01 17 7577538 7577538 C A TP53 Missense_Mutation p.R248L 0.08 deleterious(0) probably_damaging(1) TCGA-78-7149-01 17 78599561 78599561 C A RPTOR Missense_Mutation p.T78N 0.24 deleterious(0) possibly_damaging(0.878) TCGA-78-7149-01 18 28574072 28574072 G C DSC3 3'UTR 0.22 TCGA-78-7149-01 18 31323142 31323142 C T ASXL3 Silent p.L1110L 0.24 TCGA-78-7149-01 18 3879390 3879390 A T DLGAP1 Missense_Mutation p.C227S 0.19 tolerated(0.39) benign(0.108) TCGA-78-7149-01 18 42643107 42643107 G A SETBP1 Missense_Mutation p.R1412Q 0.19 deleterious(0) probably_damaging(0.99) TCGA-78-7149-01 18 60645807 60645807 G A PHLPP1 Missense_Mutation p.E1433K 0.19 deleterious(0.04) benign(0.385) TCGA-78-7149-01 19 10421236 10421236 C T FDX1L Missense_Mutation p.E160K 0.28 deleterious(0.01) benign(0.06) TCGA-78-7149-01 19 10476195 10476195 C T TYK2 Missense_Mutation p.E337K 0.04 tolerated(0.89) benign(0.001) TCGA-78-7149-01 19 10600365 10600365 C A KEAP1 Missense_Mutation p.W497L 0.62 deleterious(0.02) probably_damaging(0.997) TCGA-78-7149-01 19 16687822 16687822 G T MED26 Missense_Mutation p.F273L 0.20 tolerated(0.36) benign(0.003) TCGA-78-7149-01 19 33703454 33703454 G T SLC7A10 Silent p.L200L 0.16 TCGA-78-7149-01 19 39898488 39898488 G T ZFP36 Missense_Mutation p.D50Y 0.33 deleterious(0.01) probably_damaging(0.935) TCGA-78-7149-01 19 49470016 49470016 C T FTL 3'UTR 0.50 TCGA-78-7149-01 19 51298186 51298186 C G ACPT Missense_Mutation p.S377C 0.07 deleterious(0) benign(0.235) TCGA-78-7149-01 19 55435016 55435016 G A NLRP7 3'UTR 0.26 TCGA-78-7149-01 1 11167530 11167530 C G MTOR 3'UTR 0.21 TCGA-78-7149-01 1 151773522 151773522 C T LINGO4 Silent p.L553L 0.03 TCGA-78-7149-01 1 155288031 155288031 C G FDPS Silent p.L211L 0.05 TCGA-78-7149-01 1 158225110 158225110 C A CD1A Missense_Mutation p.R99S 0.07 deleterious(0.02) benign(0.023) TCGA-78-7149-01 1 158300725 158300725 G T CD1B Silent p.G63G 0.26 TCGA-78-7149-01 1 158687954 158687954 G C OR6K3 5'Flank 0.09 TCGA-78-7149-01 1 161018914 161018914 G A ARHGAP30 Silent p.L633L 0.09 TCGA-78-7149-01 1 175334287 175334287 C T TNR Missense_Mutation p.E816K 0.21 tolerated(0.15) benign(0.005) TCGA-78-7149-01 1 180885798 180885798 C A KIAA1614 Missense_Mutation p.P187T 0.26 tolerated(0.1) benign(0.019) TCGA-78-7149-01 1 207143467 207143467 C T FCAMR Missense_Mutation p.D2N 0.05 deleterious(0.02) possibly_damaging(0.685) TCGA-78-7149-01 1 214818019 214818019 C G CENPF Silent p.L1702L 0.04 TCGA-78-7149-01 1 22173050 22173050 G C HSPG2 Nonsense_Mutation p.S2736* 0.04 TCGA-78-7149-01 1 22817950 22817950 C G ZBTB40 Nonsense_Mutation p.S252* 0.11 TCGA-78-7149-01 1 22818015 22818015 C T ZBTB40 Missense_Mutation p.P274S 0.08 tolerated(0.68) possibly_damaging(0.641) TCGA-78-7149-01 1 228466505 228466505 C T OBSCN Silent p.G2754G 0.20 TCGA-78-7149-01 1 247171237 247171237 C T ZNF695 5'UTR 0.15 TCGA-78-7149-01 1 26299085 26299085 C T PAFAH2 Missense_Mutation p.V350I 0.11 tolerated(0.16) benign(0.11) TCGA-78-7149-01 1 26387753 26387753 G C TRIM63 Silent p.L135L 0.09 TCGA-78-7149-01 1 32052629 32052629 G T TINAGL1 3'UTR 0.40 TCGA-78-7149-01 1 35477597 35477597 A G ZMYM6 Missense_Mutation p.V319A 0.17 tolerated(0.05) possibly_damaging(0.81) TCGA-78-7149-01 1 36564747 36564747 C G COL8A2 Missense_Mutation p.G179R 0.33 deleterious(0) unknown(0) TCGA-78-7149-01 1 43824755 43824755 G A CDC20 5'UTR 0.17 TCGA-78-7149-01 1 44447061 44447061 T C B4GALT2 Missense_Mutation p.S106P 0.05 tolerated(0.29) benign(0.002) TCGA-78-7149-01 1 94998772 94998772 C G F3 Silent p.V155V 0.55 TCGA-78-7149-01 1 99771934 99771934 C G LPPR4 Missense_Mutation p.R554G 0.08 deleterious(0.01) benign(0.038) TCGA-78-7149-01 20 21687351 21687351 G T PAX1 Missense_Mutation p.D188Y 0.15 deleterious(0) probably_damaging(1) TCGA-78-7149-01 20 23856764 23856764 T A CST5 3'UTR 0.25 TCGA-78-7149-01 20 37195789 37195789 G A RALGAPB Missense_Mutation p.D1290N 0.39 tolerated(0.31) possibly_damaging(0.653) TCGA-78-7149-01 20 47990416 47990416 C G KCNB1 Missense_Mutation p.E561Q 0.07 tolerated_low_confidence(0.05) probably_damaging(1) TCGA-78-7149-01 20 49576335 49576335 C T MOCS3 Missense_Mutation p.S319L 0.15 tolerated(0.14) benign(0.067) TCGA-78-7149-01 20 55033749 55033749 G A CASS4 Silent p.A769A 0.50 TCGA-78-7149-01 20 56186808 56186808 G T ZBP1 Silent p.A283A 0.55 TCGA-78-7149-01 21 19770546 19770546 G A TMPRSS15 Silent p.F82F 0.53 TCGA-78-7149-01 21 34072413 34072413 C T SYNJ1 Missense_Mutation p.D111N 0.22 tolerated(0.18) possibly_damaging(0.875) TCGA-78-7149-01 21 34922804 34922804 C T SON Missense_Mutation p.P423S 0.16 possibly_damaging(0.641) TCGA-78-7149-01 22 29695251 29695251 G C EWSR1 Missense_Mutation p.W541C 0.13 deleterious(0) unknown(0) TCGA-78-7149-01 22 36123141 36123141 G A APOL5 Silent p.R342R 0.43 TCGA-78-7149-01 22 39219239 39219239 T A NPTXR Missense_Mutation p.D376V 0.17 deleterious(0) probably_damaging(0.994) TCGA-78-7149-01 2 108496510 108496510 G A RGPD4 Missense_Mutation p.G1671S 0.12 deleterious_low_confidence(0) benign(0.258) TCGA-78-7149-01 2 113190969 113190969 G A RGPD8 Missense_Mutation p.S21L 0.19 tolerated(0.06) possibly_damaging(0.885) TCGA-78-7149-01 2 116594317 116594317 C A DPP10 Missense_Mutation p.A730D 0.08 deleterious(0) probably_damaging(0.985) TCGA-78-7149-01 2 128873862 128873862 A T UGGT1 Missense_Mutation p.I273F 0.05 tolerated(0.07) possibly_damaging(0.564) TCGA-78-7149-01 2 130831864 130831864 C A POTEF Nonsense_Mutation p.E1061* 0.52 TCGA-78-7149-01 2 130951410 130951410 G C TUBA3E Missense_Mutation p.I335M 0.14 tolerated_low_confidence(0.06) probably_damaging(0.958) TCGA-78-7149-01 2 152330523 152330524 - A RIF1 Frame_Shift_Ins p.T2383Nfs*8 0.15 TCGA-78-7149-01 2 152331516 152331516 T C RIF1 Silent p.C2450C 0.44 TCGA-78-7149-01 2 160204009 160204009 A G BAZ2B Silent p.S1814S 0.16 TCGA-78-7149-01 2 219137401 219137401 C T PNKD Intron 0.08 TCGA-78-7149-01 2 226273717 226273717 G C NYAP2 Missense_Mutation p.D41H 0.18 deleterious(0) probably_damaging(0.999) TCGA-78-7149-01 2 226273727 226273727 G A NYAP2 Missense_Mutation p.R44Q 0.19 deleterious(0) probably_damaging(0.997) TCGA-78-7149-01 2 27293232 27293232 T G AGBL5 3'UTR 0.19 TCGA-78-7149-01 2 89309925 89309925 C A IGKV1-9 Silent p.L10L 0.11 TCGA-78-7149-01 3 109031471 109031471 G A DPPA2 Silent p.D34D 0.05 TCGA-78-7149-01 3 128979633 128979633 A G COPG1 Missense_Mutation p.I371V 0.08 deleterious(0) probably_damaging(0.99) TCGA-78-7149-01 3 183885740 183885740 G T DVL3 Missense_Mutation p.R462M 0.26 deleterious(0) probably_damaging(0.986) TCGA-78-7149-01 3 183885741 183885741 G T DVL3 Missense_Mutation p.R462S 0.26 deleterious(0.01) probably_damaging(0.952) TCGA-78-7149-01 3 184675167 184675167 G A VPS8 Missense_Mutation p.G1014D 0.25 tolerated(0.42) benign(0.002) TCGA-78-7149-01 3 194180676 194180676 C T ATP13A3 Missense_Mutation p.A84T 0.37 tolerated(0.18) benign(0.1) TCGA-78-7149-01 3 69097684 69097684 C G TMF1 Missense_Mutation p.D58H 0.04 tolerated_low_confidence(0.07) possibly_damaging(0.738) TCGA-78-7149-01 4 100518350 100518350 C A MTTP Missense_Mutation p.Q346K 0.10 tolerated(0.28) benign(0.01) TCGA-78-7149-01 4 10084647 10084647 T A WDR1 Missense_Mutation p.S399C 0.24 deleterious(0.03) probably_damaging(0.976) TCGA-78-7149-01 4 113352234 113352234 C T ALPK1 Missense_Mutation p.H511Y 0.45 tolerated(1) benign(0.002) TCGA-78-7149-01 4 11400725 11400725 C G HS3ST1 Missense_Mutation p.R302T 0.19 deleterious(0.01) benign(0.292) TCGA-78-7149-01 4 119948362 119948362 G T SYNPO2 Nonsense_Mutation p.G280* 0.45 TCGA-78-7149-01 4 120085430 120085430 C T MYOZ2 Silent p.Y147Y 0.20 TCGA-78-7149-01 4 185618908 185618908 C G CENPU Missense_Mutation p.E346Q 0.11 deleterious(0.04) benign(0.266) TCGA-78-7149-01 4 3227395 3227395 C A HTT Silent p.L2591L 0.24 TCGA-78-7149-01 4 49046815 49046815 A G CWH43 Missense_Mutation p.T606A 0.13 deleterious(0.02) benign(0.106) TCGA-78-7149-01 4 57189656 57189656 C T KIAA1211 Missense_Mutation p.R1101W 0.40 deleterious(0) possibly_damaging(0.835) TCGA-78-7149-01 4 69512768 69512768 A C UGT2B15 3'UTR 0.52 TCGA-78-7149-01 4 88312133 88312133 C T HSD17B11 Silent p.R30R 0.06 TCGA-78-7149-01 5 140502747 140502747 G A PCDHB4 Silent p.P389P 0.62 TCGA-78-7149-01 5 140604764 140604764 T C PCDHB14 Missense_Mutation p.Y563H 0.36 deleterious_low_confidence(0.04) benign(0.081) TCGA-78-7149-01 5 162883952 162883952 C G NUDCD2 Missense_Mutation p.E125Q 0.13 tolerated(0.2) benign(0.309) TCGA-78-7149-01 5 169533097 169533097 C A FOXI1 Silent p.R46R 0.09 TCGA-78-7149-01 5 180338435 180338435 C A BTNL8 Missense_Mutation p.A165E 0.04 deleterious(0.01) benign(0.345) TCGA-78-7149-01 5 5464745 5464745 C T KIAA0947 Silent p.L1766L 0.11 TCGA-78-7149-01 6 138200479 138200479 G A TNFAIP3 Missense_Mutation p.E633K 0.10 tolerated(0.07) probably_damaging(0.997) TCGA-78-7149-01 6 1742745 1742745 C T GMDS Missense_Mutation p.E283K 0.18 deleterious_low_confidence(0.04) benign(0.181) TCGA-78-7149-01 6 17608573 17608573 C - FAM8A1 3'UTR 0.35 TCGA-78-7149-01 6 28891242 28891242 G C TRIM27 Missense_Mutation p.C56W 0.13 deleterious(0) probably_damaging(0.963) TCGA-78-7149-01 6 43152373 43152373 G A CUL9 Missense_Mutation p.E109K 0.06 tolerated(0.24) benign(0.041) TCGA-78-7149-01 6 43308072 43308072 C G ZNF318 Missense_Mutation p.E1222Q 0.13 possibly_damaging(0.842) TCGA-78-7149-01 6 71235143 71235143 G A FAM135A Missense_Mutation p.D786N 0.21 deleterious(0.01) possibly_damaging(0.645) TCGA-78-7149-01 6 88240532 88240532 C G RARS2 Missense_Mutation p.L247F 0.18 tolerated(0.22) benign(0.232) TCGA-78-7149-01 7 100679181 100679181 C T MUC17 Missense_Mutation p.S1495F 0.19 unknown(0) TCGA-78-7149-01 7 102953661 102953661 G C PMPCB 3'UTR 0.22 TCGA-78-7149-01 7 103137192 103137192 C T RELN Missense_Mutation p.E2992K 0.15 deleterious(0.04) possibly_damaging(0.507) TCGA-78-7149-01 7 122338615 122338615 T C RNF133 Missense_Mutation p.T120A 0.05 tolerated(1) benign(0.003) TCGA-78-7149-01 7 128493015 128493015 C G FLNC Silent p.V2046V 0.19 TCGA-78-7149-01 7 132169767 132169767 G A PLXNA4 Intron 0.37 TCGA-78-7149-01 7 133164812 133164812 C T EXOC4 Missense_Mutation p.S446L 0.24 tolerated(0.21) benign(0.061) TCGA-78-7149-01 7 142641793 142641793 G A KEL Silent p.L450L 0.21 TCGA-78-7149-01 7 143701741 143701741 T C OR6B1 Missense_Mutation p.Y218H 0.45 deleterious(0) probably_damaging(0.988) TCGA-78-7149-01 7 150767303 150767303 G T SLC4A2 Missense_Mutation p.R440L 0.10 deleterious(0.02) probably_damaging(1) TCGA-78-7149-01 7 26233309 26233309 T A HNRNPA2B1 Missense_Mutation p.N255Y 0.39 tolerated(0.08) unknown(0) TCGA-78-7149-01 7 34182860 34182860 G T BMPER Missense_Mutation p.M588I 0.21 deleterious(0) benign(0.397) TCGA-78-7149-01 7 39610105 39610105 G A YAE1D1 Missense_Mutation p.E44K 0.09 deleterious(0) probably_damaging(0.998) TCGA-78-7149-01 7 43548448 43548448 G A HECW1 Intron 0.07 TCGA-78-7149-01 7 51203960 51203960 C A COBL Silent p.S284S 0.43 TCGA-78-7149-01 7 5254062 5254062 C T WIPI2 Intron 0.07 TCGA-78-7149-01 7 75441236 75441236 C A CCL24 Nonsense_Mutation p.E80* 0.42 TCGA-78-7149-01 7 86991112 86991112 C G CROT Missense_Mutation p.S192C 0.05 tolerated(0.4) benign(0.02) TCGA-78-7149-01 8 134233066 134233066 C A WISP1 Missense_Mutation p.R198S 0.27 tolerated(0.08) benign(0.246) TCGA-78-7149-01 8 26492307 26492307 A T DPYSL2 Missense_Mutation p.E234D 0.15 deleterious(0.02) benign(0.05) TCGA-78-7149-01 8 41581127 41581127 C T ANK1 Missense_Mutation p.A279T 0.16 deleterious(0) probably_damaging(0.999) TCGA-78-7149-01 8 41791420 41791420 C A KAT6A Nonsense_Mutation p.E1440* 0.38 TCGA-78-7149-01 8 41800300 41800300 C T KAT6A Intron 0.06 TCGA-78-7149-01 8 56686106 56686106 C T TGS1 5'UTR 0.12 TCGA-78-7149-01 8 66753652 66753652 G C PDE7A Missense_Mutation p.S31C 0.16 deleterious(0) probably_damaging(0.993) TCGA-78-7149-01 8 80976821 80976821 C T TPD52 Silent p.L49L 0.16 TCGA-78-7149-01 8 88885129 88885129 G A DCAF4L2 Silent p.P357P 0.40 TCGA-78-7149-01 8 90983437 90983437 G A NBN Silent p.F222F 0.16 TCGA-78-7149-01 9 120476775 120476775 G A TLR4 Missense_Mutation p.S790N 0.05 tolerated(0.28) benign(0.074) TCGA-78-7149-01 9 138683691 138683691 C A KCNT1 Missense_Mutation p.P1184H 0.61 deleterious(0) probably_damaging(1) TCGA-78-7149-01 9 17789495 17789495 G A SH3GL2 Missense_Mutation p.D191N 0.42 deleterious(0.02) probably_damaging(0.998) TCGA-78-7149-01 9 32634735 32634735 C G TAF1L Missense_Mutation p.K281N 0.04 deleterious(0.01) probably_damaging(0.971) TCGA-78-7149-01 X 101572213 101572213 A G NXF2 Intron 0.29 TCGA-78-7149-01 X 142795090 142795090 C T SPANXN2 3'UTR 0.68 TCGA-78-7149-01 X 37028517 37028517 C G FAM47C Silent p.L678L 0.14 TCGA-78-7149-01 X 37700311 37700311 T A DYNLT3 Missense_Mutation p.S82C 0.25 deleterious(0.04) probably_damaging(0.946) TCGA-78-7149-01 X 54955213 54955213 G A TRO Missense_Mutation p.D686N 0.54 tolerated(0.17) unknown(0) TCGA-78-7150-01 10 105883633 105883633 A G SFR1 Silent p.Q99Q 0.51 TCGA-78-7150-01 10 108459107 108459107 C G SORCS1 Silent p.A426A 0.64 TCGA-78-7150-01 10 123810054 123810054 A T TACC2 Missense_Mutation p.R45S 0.49 benign(0.002) TCGA-78-7150-01 10 124092011 124092011 G T BTBD16 Missense_Mutation p.G383W 0.48 deleterious(0) probably_damaging(1) TCGA-78-7150-01 10 127806654 127806654 C A ADAM12 Missense_Mutation p.A189S 0.39 tolerated(0.65) benign(0.004) TCGA-78-7150-01 10 127806655 127806655 G A ADAM12 Silent p.L188L 0.40 TCGA-78-7150-01 10 25465055 25465055 C A GPR158 Missense_Mutation p.R236S 0.33 deleterious(0.02) benign(0.2) TCGA-78-7150-01 10 26849724 26849724 G T APBB1IP Missense_Mutation p.W440C 0.13 deleterious(0.01) benign(0.111) TCGA-78-7150-01 10 3143132 3143132 G T PFKP Intron 0.19 TCGA-78-7150-01 10 33481304 33481304 G C NRP1 Missense_Mutation p.S656C 0.36 tolerated(0.07) probably_damaging(0.971) TCGA-78-7150-01 10 37421180 37421180 C A ANKRD30A Missense_Mutation p.P119T 0.31 deleterious(0) probably_damaging(0.975) TCGA-78-7150-01 10 38343813 38343813 G A ZNF33A Missense_Mutation p.R254K 0.30 tolerated(0.96) benign(0.011) TCGA-78-7150-01 10 44873744 44873744 G T AL137026.1 Intron 0.60 TCGA-78-7150-01 10 44873745 44873745 A T AL137026.1 Intron 0.60 TCGA-78-7150-01 10 5471146 5471146 G C NET1 Missense_Mutation p.R70T 0.14 tolerated(0.1) possibly_damaging(0.663) TCGA-78-7150-01 10 5937145 5937145 C T FBXO18 Missense_Mutation p.A50V 0.43 tolerated_low_confidence(0.16) benign(0.005) TCGA-78-7150-01 10 88703746 88703746 G - MMRN2 Frame_Shift_Del p.D265Efs*73 0.36 TCGA-78-7150-01 10 94828197 94828197 G T CYP26C1 Nonsense_Mutation p.E438* 0.51 TCGA-78-7150-01 10 96484212 96484212 A C CYP2C18 Missense_Mutation p.R357S 0.57 deleterious(0) probably_damaging(1) TCGA-78-7150-01 10 98743574 98743574 G A C10orf12 Missense_Mutation p.M809I 0.29 deleterious(0.02) benign(0.067) TCGA-78-7150-01 11 100179184 100179184 G A CNTN5 Missense_Mutation p.R905K 0.11 tolerated(0.16) benign(0.057) TCGA-78-7150-01 11 100909932 100909932 G - PGR Frame_Shift_Del p.P906Qfs*3 0.14 TCGA-78-7150-01 11 117392000 117392000 T G DSCAML1 Missense_Mutation p.E413A 0.35 tolerated(0.07) benign(0.253) TCGA-78-7150-01 11 119029015 119029015 G A ABCG4 Silent p.R380R 0.33 TCGA-78-7150-01 11 123777258 123777258 G T OR8D4 Silent p.V40V 0.20 TCGA-78-7150-01 11 123777259 123777259 G T OR8D4 Nonsense_Mutation p.G41* 0.20 TCGA-78-7150-01 11 123777260 123777260 G T OR8D4 Missense_Mutation p.G41V 0.20 deleterious(0) probably_damaging(0.93) TCGA-78-7150-01 11 123847664 123847664 G T OR10S1 Silent p.A245A 0.32 TCGA-78-7150-01 11 123886543 123886543 G - OR10G4 Frame_Shift_Del p.G88Afs*47 0.17 TCGA-78-7150-01 11 123886650 123886650 G T OR10G4 Missense_Mutation p.L123F 0.17 deleterious(0) probably_damaging(0.918) TCGA-78-7150-01 11 124766430 124766430 G T ROBO4 Silent p.A179A 0.08 TCGA-78-7150-01 11 1265880 1265880 C G MUC5B Silent p.T2590T 0.32 TCGA-78-7150-01 11 130343292 130343292 C G ADAMTS15 Missense_Mutation p.S810C 0.12 tolerated(0.06) benign(0.246) TCGA-78-7150-01 11 14665637 14665637 C T PDE3B Nonsense_Mutation p.R6* 0.25 TCGA-78-7150-01 11 26725348 26725348 A T SLC5A12 Missense_Mutation p.H224Q 0.35 deleterious(0.04) benign(0.002) TCGA-78-7150-01 11 30938437 30938437 C T DCDC1 Silent p.V1144V 0.20 TCGA-78-7150-01 11 30946861 30946861 C A DCDC1 Nonsense_Mutation p.E998* 0.33 TCGA-78-7150-01 11 34139952 34139952 C G NAT10 Missense_Mutation p.L228V 0.14 tolerated(0.32) benign(0.006) TCGA-78-7150-01 11 3661095 3661095 C G ART5 Missense_Mutation p.K188N 0.35 tolerated(0.07) benign(0.281) TCGA-78-7150-01 11 36631652 36631652 G A C11orf74 5'UTR 0.19 TCGA-78-7150-01 11 3681076 3681076 C G ART1 Silent p.G109G 0.59 TCGA-78-7150-01 11 43411234 43411234 A C TTC17 Missense_Mutation p.E94D 0.23 tolerated(0.19) benign(0.365) TCGA-78-7150-01 11 44129289 44129289 C T EXT2 Silent p.I42I 0.16 TCGA-78-7150-01 11 44286517 44286517 G T ALX4 Missense_Mutation p.P375T 0.21 tolerated(0.07) probably_damaging(0.992) TCGA-78-7150-01 11 47356692 47356692 T A MYBPC3 Missense_Mutation p.T936S 0.37 deleterious(0) probably_damaging(0.999) TCGA-78-7150-01 11 4870112 4870112 C T OR51S1 Missense_Mutation p.M109I 0.34 deleterious(0.02) probably_damaging(0.989) TCGA-78-7150-01 11 51411669 51411669 C T OR4A5 Missense_Mutation p.V243I 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.577) TCGA-78-7150-01 11 55063138 55063138 A T TRIM51HP RNA 0.30 TCGA-78-7150-01 11 5530072 5530072 C A UBQLN3 Silent p.R239R 0.17 TCGA-78-7150-01 11 55944574 55944574 A G OR5J2 Missense_Mutation p.I161V 0.44 tolerated(0.7) benign(0.008) TCGA-78-7150-01 11 58378469 58378469 G C ZFP91 Missense_Mutation p.E222Q 0.26 deleterious(0) probably_damaging(0.986) TCGA-78-7150-01 11 64367924 64367924 C G SLC22A12 Missense_Mutation p.S457R 0.40 deleterious(0.02) possibly_damaging(0.66) TCGA-78-7150-01 11 644541 644541 G A DEAF1 3'UTR 0.21 TCGA-78-7150-01 11 65635412 65635412 G C EFEMP2 Missense_Mutation p.Q364E 0.13 deleterious(0) probably_damaging(0.935) TCGA-78-7150-01 11 6644840 6644840 C T DCHS1 Silent p.L2689L 0.12 TCGA-78-7150-01 11 70279327 70279327 G C CTTN Missense_Mutation p.A426P 0.26 tolerated(0.29) possibly_damaging(0.548) TCGA-78-7150-01 11 71927862 71927862 G A FOLR2 5'UTR 0.17 TCGA-78-7150-01 11 7324274 7324274 C G SYT9 Missense_Mutation p.I50M 0.25 deleterious(0) possibly_damaging(0.653) TCGA-78-7150-01 11 77589954 77589954 G C INTS4 3'UTR 0.09 TCGA-78-7150-01 11 77919914 77919914 T G USP35 Missense_Mutation p.I499M 0.57 deleterious(0.02) unknown(0) TCGA-78-7150-01 11 77991716 77991716 C T GAB2 Missense_Mutation p.E103K 0.11 deleterious(0.01) benign(0.278) TCGA-78-7150-01 11 8158962 8158962 C A RIC3 Nonsense_Mutation p.E162* 0.12 TCGA-78-7150-01 11 89885504 89885504 C A NAALAD2 Silent p.I216I 0.29 TCGA-78-7150-01 11 92087809 92087809 C T FAT3 Missense_Mutation p.S844L 0.33 benign(0.008) TCGA-78-7150-01 11 92534064 92534064 G A FAT3 Missense_Mutation p.D2629N 0.13 possibly_damaging(0.579) TCGA-78-7150-01 11 93469199 93469199 C G TAF1D 3'UTR 0.29 TCGA-78-7150-01 12 110944491 110944491 C T RAD9B Silent p.Y127Y 0.19 TCGA-78-7150-01 12 113748059 113748059 G A SLC8B1 Nonsense_Mutation p.Q413* 0.18 TCGA-78-7150-01 12 123419844 123419844 C T ABCB9 Missense_Mutation p.M626I 0.22 tolerated(0.08) benign(0.016) TCGA-78-7150-01 12 124397651 124397651 A T DNAH10 Missense_Mutation p.R3263W 0.26 possibly_damaging(0.762) TCGA-78-7150-01 12 25299959 25299959 C A CASC1 Missense_Mutation p.W222L 0.14 deleterious(0) probably_damaging(1) TCGA-78-7150-01 12 27128438 27128438 G A TM7SF3 Nonsense_Mutation p.Q481* 0.13 TCGA-78-7150-01 12 38714725 38714725 A G ALG10B Missense_Mutation p.I378V 0.18 tolerated(0.55) benign(0.019) TCGA-78-7150-01 12 49361889 49361889 G C WNT10B Nonsense_Mutation p.S184* 0.43 TCGA-78-7150-01 12 49434560 49434560 C A KMT2D Silent p.L2331L 0.42 TCGA-78-7150-01 12 58015561 58015561 T A SLC26A10 Missense_Mutation p.V215D 0.38 tolerated(0.06) probably_damaging(0.999) TCGA-78-7150-01 12 7632510 7632510 C A CD163 Missense_Mutation p.K1142N 0.26 tolerated(0.09) possibly_damaging(0.69) TCGA-78-7150-01 12 80750290 80750290 G C OTOGL Missense_Mutation p.Q1958H 0.35 deleterious(0.04) possibly_damaging(0.703) TCGA-78-7150-01 12 8374865 8374865 G A FAM90A1 Silent p.P316P 0.16 TCGA-78-7150-01 12 86374139 86374139 G A MGAT4C Missense_Mutation p.S122L 0.29 deleterious(0) probably_damaging(1) TCGA-78-7150-01 13 101763510 101763510 G A NALCN Missense_Mutation p.L754F 0.18 tolerated(0.34) benign(0.022) TCGA-78-7150-01 13 111114675 111114675 G A COL4A2 Missense_Mutation p.D574N 0.25 benign(0.081) TCGA-78-7150-01 13 19747960 19747960 G A TUBA3C 3'UTR 0.27 TCGA-78-7150-01 13 19748132 19748132 G A TUBA3C Silent p.Y408Y 0.31 TCGA-78-7150-01 13 25262552 25262552 C G ATP12A Silent p.L108L 0.17 TCGA-78-7150-01 13 32749689 32749689 G A FRY Missense_Mutation p.D781N 0.35 tolerated(0.12) possibly_damaging(0.552) TCGA-78-7150-01 13 37269436 37269436 C T SERTM1 Missense_Mutation p.S74F 0.19 deleterious_low_confidence(0) benign(0.143) TCGA-78-7150-01 13 48528386 48528386 C A SUCLA2 Missense_Mutation p.M332I 0.19 deleterious(0) possibly_damaging(0.734) TCGA-78-7150-01 13 52034938 52034938 G C RPS4XP16 RNA 0.19 TCGA-78-7150-01 13 58208714 58208714 G C PCDH17 Missense_Mutation p.K678N 0.29 tolerated(0.3) possibly_damaging(0.735) TCGA-78-7150-01 13 86369241 86369241 T C SLITRK6 Missense_Mutation p.N468S 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-78-7150-01 13 99340768 99340768 G A SLC15A1 Silent p.I510I 0.22 TCGA-78-7150-01 14 101195281 101195281 C A DLK1 Missense_Mutation p.P47H 0.44 deleterious(0) probably_damaging(0.988) TCGA-78-7150-01 14 105417947 105417947 C T AHNAK2 Missense_Mutation p.E1281K 0.55 possibly_damaging(0.486) TCGA-78-7150-01 14 22133935 22133935 C G OR4E2 Silent p.A213A 0.40 TCGA-78-7150-01 14 23465468 23465468 C T C14orf93 Missense_Mutation p.D203N 0.43 tolerated_low_confidence(0.07) probably_damaging(0.981) TCGA-78-7150-01 14 24528901 24528901 T G LRRC16B Missense_Mutation p.S610A 0.39 deleterious(0) benign(0.358) TCGA-78-7150-01 14 26949326 26949326 T A NOVA1 Missense_Mutation p.I102F 0.46 deleterious(0) unknown(0) TCGA-78-7150-01 14 31416332 31416332 C A STRN3 Missense_Mutation p.G227V 0.32 tolerated(0.1) benign(0.154) TCGA-78-7150-01 14 45369754 45369754 G T C14orf28 Missense_Mutation p.R39L 0.42 deleterious_low_confidence(0) possibly_damaging(0.858) TCGA-78-7150-01 14 45465012 45465012 G A FAM179B Missense_Mutation p.D704N 0.46 deleterious(0) probably_damaging(0.942) TCGA-78-7150-01 14 50245145 50245145 G T KLHDC2 Missense_Mutation p.R189I 0.43 tolerated(0.06) probably_damaging(0.998) TCGA-78-7150-01 14 50245146 50245146 A T KLHDC2 Missense_Mutation p.R189S 0.44 tolerated(0.11) probably_damaging(0.996) TCGA-78-7150-01 14 50266231 50266231 T C NEMF Silent p.K809K 0.45 TCGA-78-7150-01 14 57741544 57741544 C T AP5M1 Silent p.S219S 0.40 TCGA-78-7150-01 14 64494420 64494420 A T SYNE2 Missense_Mutation p.Y2208F 0.42 probably_damaging(0.998) TCGA-78-7150-01 14 74970292 74970292 C T LTBP2 Missense_Mutation p.D1534N 0.46 tolerated(0.31) possibly_damaging(0.873) TCGA-78-7150-01 14 75329988 75329988 G A PROX2 Missense_Mutation p.R184C 0.23 deleterious(0.04) possibly_damaging(0.599) TCGA-78-7150-01 14 89291101 89291101 G T TTC8 Missense_Mutation p.R17L 0.31 deleterious(0.02) probably_damaging(0.986) TCGA-78-7150-01 14 91633606 91633606 C T C14orf159 Silent p.S47S 0.59 TCGA-78-7150-01 14 96848614 96848614 A T GSKIP Silent p.L10L 0.47 TCGA-78-7150-01 15 22368926 22368926 G A OR4M2 Silent p.V117V 0.13 TCGA-78-7150-01 15 37184626 37184626 C T MEIS2 Silent p.Q394Q 0.51 TCGA-78-7150-01 15 37376025 37376025 C A MEIS2 Missense_Mutation p.G234V 0.43 tolerated(0.08) possibly_damaging(0.77) TCGA-78-7150-01 15 44955723 44955723 G C SPG11 Silent p.L41L 0.25 TCGA-78-7150-01 15 48413264 48413264 C T SLC24A5 Missense_Mutation p.T8I 0.20 tolerated_low_confidence(0.46) benign(0.008) TCGA-78-7150-01 15 50773724 50773724 G C USP8 Missense_Mutation p.R422T 0.26 deleterious(0.04) benign(0.014) TCGA-78-7150-01 15 53992079 53992079 C T WDR72 Missense_Mutation p.E545K 0.55 tolerated(0.1) possibly_damaging(0.546) TCGA-78-7150-01 15 83561536 83561536 C T HOMER2 Silent p.K21K 0.13 TCGA-78-7150-01 16 10769983 10769983 G C TEKT5 Missense_Mutation p.Q307E 0.19 deleterious(0) possibly_damaging(0.854) TCGA-78-7150-01 16 20576009 20576009 G T ACSM2B Missense_Mutation p.H53Q 0.66 tolerated(0.54) benign(0.029) TCGA-78-7150-01 16 2233834 2233834 C T CASKIN1 Missense_Mutation p.E509K 0.18 probably_damaging(0.999) TCGA-78-7150-01 16 23690396 23690396 G A PLK1 Missense_Mutation p.R48H 0.48 tolerated(0.14) benign(0.012) TCGA-78-7150-01 16 27506568 27506568 T C GTF3C1 Missense_Mutation p.T866A 0.41 tolerated(0.84) benign(0.001) TCGA-78-7150-01 16 28878713 28878713 C A SH2B1 Missense_Mutation p.A334D 0.43 deleterious(0) probably_damaging(0.989) TCGA-78-7150-01 16 3634838 3634838 T G SLX4 Missense_Mutation p.K1557N 0.54 deleterious(0) possibly_damaging(0.67) TCGA-78-7150-01 16 51174068 51174068 A G SALL1 Missense_Mutation p.S689P 0.26 deleterious(0) probably_damaging(0.993) TCGA-78-7150-01 16 57503178 57503178 C T POLR2C Silent p.L120L 0.09 TCGA-78-7150-01 16 57503195 57503195 G A POLR2C Missense_Mutation p.R126Q 0.28 tolerated(0.11) benign(0.022) TCGA-78-7150-01 16 57719568 57719568 G A GPR97 Missense_Mutation p.E424K 0.14 tolerated(0.61) benign(0.009) TCGA-78-7150-01 16 81348805 81348805 C G GAN Missense_Mutation p.F29L 0.38 tolerated(0.5) benign(0.025) TCGA-78-7150-01 17 10299898 10299898 C G MYH8 Silent p.T1500T 0.41 TCGA-78-7150-01 17 14095532 14095532 G A COX10 Missense_Mutation p.D308N 0.12 tolerated(0.06) benign(0.053) TCGA-78-7150-01 17 16326824 16326824 G T TRPV2 Missense_Mutation p.D223Y 0.51 deleterious(0.02) probably_damaging(0.988) TCGA-78-7150-01 17 17078657 17078657 G A MPRIP Silent p.L880L 0.27 TCGA-78-7150-01 17 27000441 27000441 G A SUPT6H Missense_Mutation p.E8K 0.26 deleterious_low_confidence(0.03) unknown(0) TCGA-78-7150-01 17 3181738 3181738 G T OR3A2 Missense_Mutation p.N164K 0.45 deleterious(0) possibly_damaging(0.644) TCGA-78-7150-01 17 32483356 32483356 A G ASIC2 Missense_Mutation p.Y66H 0.21 tolerated(0.1) benign(0.065) TCGA-78-7150-01 17 3595190 3595190 G A P2RX5 Intron 0.15 TCGA-78-7150-01 17 37584015 37584015 G C MED1 Silent p.V226V 0.22 TCGA-78-7150-01 17 38186033 38186033 G A MED24 Missense_Mutation p.R412W 0.39 deleterious(0) probably_damaging(0.999) TCGA-78-7150-01 17 43226847 43226847 C T HEXIM1 Missense_Mutation p.S97L 0.24 tolerated_low_confidence(0.42) benign(0) TCGA-78-7150-01 17 46691978 46691978 T G HOXB8 Missense_Mutation p.Q30P 0.50 tolerated(0.28) possibly_damaging(0.649) TCGA-78-7150-01 17 66902184 66902184 C A ABCA8 Splice_Site p.X760_splice 0.15 TCGA-78-7150-01 17 73566162 73566162 G A LLGL2 Missense_Mutation p.R567H 0.44 deleterious(0.03) possibly_damaging(0.901) TCGA-78-7150-01 17 7578457 7578457 C A TP53 Missense_Mutation p.R158L 0.43 deleterious(0) probably_damaging(0.986) TCGA-78-7150-01 18 21747364 21747364 C T OSBPL1A Missense_Mutation p.E822K 0.09 deleterious(0.01) benign(0.292) TCGA-78-7150-01 18 22805128 22805128 G T ZNF521 Silent p.I918I 0.19 TCGA-78-7150-01 18 22807050 22807050 G A ZNF521 Nonsense_Mutation p.R278* 0.23 TCGA-78-7150-01 18 2610858 2610858 G A NDC80 Missense_Mutation p.E597K 0.28 deleterious(0.03) possibly_damaging(0.45) TCGA-78-7150-01 18 28710636 28710636 A G DSC1 Silent p.H842H 0.47 TCGA-78-7150-01 18 32374075 32374075 G A DTNA Missense_Mutation p.E75K 0.17 tolerated(0.05) probably_damaging(0.913) TCGA-78-7150-01 18 40857279 40857279 G A SYT4 5'UTR 0.48 TCGA-78-7150-01 18 67688031 67688031 T A RTTN Silent p.S1991S 0.32 TCGA-78-7150-01 18 9595070 9595070 A G PPP4R1 Missense_Mutation p.L45S 0.30 deleterious(0) probably_damaging(0.999) TCGA-78-7150-01 19 10431489 10431489 G C RAVER1 Missense_Mutation p.P555A 0.25 tolerated(0.1) benign(0.004) TCGA-78-7150-01 19 17330079 17330079 C T USE1 Silent p.L160L 0.14 TCGA-78-7150-01 19 18684139 18684139 G A UBA52 Missense_Mutation p.G10D 0.08 deleterious(0.02) benign(0.104) TCGA-78-7150-01 19 18710483 18710483 C A CRLF1 Missense_Mutation p.A97S 0.50 tolerated(1) benign(0.003) TCGA-78-7150-01 19 22362910 22362910 C G ZNF676 Missense_Mutation p.E537Q 0.25 deleterious(0.05) probably_damaging(0.986) TCGA-78-7150-01 19 22379459 22379459 G T ZNF676 5'UTR 0.43 TCGA-78-7150-01 19 2790526 2790526 G A THOP1 Missense_Mutation p.E42K 0.20 tolerated(0.59) benign(0.064) TCGA-78-7150-01 19 31769504 31769504 G A TSHZ3 Nonsense_Mutation p.Q399* 0.61 TCGA-78-7150-01 19 33076808 33076808 G A PDCD5 Missense_Mutation p.E85K 0.65 deleterious(0.02) benign(0.09) TCGA-78-7150-01 19 3623983 3623983 T C CACTIN Silent p.A115A 0.44 TCGA-78-7150-01 19 37130289 37130289 G A ZNF461 Nonsense_Mutation p.Q320* 0.18 TCGA-78-7150-01 19 37130448 37130448 G A ZNF461 Missense_Mutation p.H267Y 0.13 deleterious(0) possibly_damaging(0.51) TCGA-78-7150-01 19 38229543 38229543 C A ZNF573 Silent p.G616G 0.71 TCGA-78-7150-01 19 42814213 42814213 G A PRR19 Silent p.Q159Q 0.70 TCGA-78-7150-01 19 44005962 44005962 C T PHLDB3 Missense_Mutation p.R153Q 0.55 tolerated(0.11) possibly_damaging(0.787) TCGA-78-7150-01 19 44661636 44661636 C A ZNF234 Nonsense_Mutation p.C489* 0.67 TCGA-78-7150-01 19 44739918 44739918 C G ZNF227 Missense_Mutation p.F445L 0.34 deleterious(0.03) probably_damaging(0.997) TCGA-78-7150-01 19 44740270 44740270 C G ZNF227 Missense_Mutation p.L563V 0.37 deleterious(0) probably_damaging(0.998) TCGA-78-7150-01 19 45406444 45406444 C T TOMM40 3'UTR 0.13 TCGA-78-7150-01 19 51022063 51022063 G A LRRC4B Missense_Mutation p.L303F 0.64 deleterious(0) probably_damaging(0.996) TCGA-78-7150-01 19 54744411 54744411 G T LILRA6 Missense_Mutation p.P333T 0.40 deleterious(0) probably_damaging(0.998) TCGA-78-7150-01 19 54849257 54849257 G T LILRA4 Missense_Mutation p.T202N 0.67 tolerated(0.27) benign(0.015) TCGA-78-7150-01 19 5654150 5654150 G C SAFB Missense_Mutation p.K535N 0.48 deleterious(0.02) possibly_damaging(0.468) TCGA-78-7150-01 19 57175427 57175427 G A ZNF835 Silent p.H380H 0.53 TCGA-78-7150-01 19 57328382 57328382 T C PEG3 Silent p.R476R 0.68 TCGA-78-7150-01 19 57646645 57646645 C A ZIM3 Nonsense_Mutation p.E354* 0.60 TCGA-78-7150-01 19 6427134 6427134 C A SLC25A41 Missense_Mutation p.R307L 0.31 deleterious(0) possibly_damaging(0.743) TCGA-78-7150-01 19 6459599 6459599 C A SLC25A23 Missense_Mutation p.W14L 0.48 tolerated(0.8) benign(0.414) TCGA-78-7150-01 19 7141783 7141783 C T INSR Missense_Mutation p.E863K 0.14 tolerated(0.16) benign(0.295) TCGA-78-7150-01 19 9077470 9077470 C T MUC16 Missense_Mutation p.G3326R 0.56 unknown(0) TCGA-78-7150-01 19 9082874 9082874 C A MUC16 Nonsense_Mutation p.G2981* 0.47 TCGA-78-7150-01 19 9646921 9646921 G C ZNF426 5'UTR 0.12 TCGA-78-7150-01 1 100547675 100547675 G A HIAT1 Nonsense_Mutation p.W461* 0.12 TCGA-78-7150-01 1 104116440 104116440 G T AMY2B Silent p.G208G 0.13 TCGA-78-7150-01 1 10459170 10459170 C - PGD 5'UTR 0.30 TCGA-78-7150-01 1 10468178 10468178 G C PGD Missense_Mutation p.G167A 0.17 deleterious(0.01) benign(0.011) TCGA-78-7150-01 1 113638582 113638582 A G LRIG2 Missense_Mutation p.N297S 0.12 deleterious(0.01) possibly_damaging(0.77) TCGA-78-7150-01 1 114430083 114430083 C T BCL2L15 5'UTR 0.18 TCGA-78-7150-01 1 115215835 115215835 A G AMPD1 Missense_Mutation p.I748T 0.23 deleterious(0.01) probably_damaging(0.993) TCGA-78-7150-01 1 115428757 115428757 G T SYCP1 Missense_Mutation p.K339N 0.14 deleterious(0.03) benign(0.059) TCGA-78-7150-01 1 119934730 119934730 C T HAO2 Intron 0.22 TCGA-78-7150-01 1 12383832 12383832 G C VPS13D Missense_Mutation p.C2662S 0.28 benign(0.005) TCGA-78-7150-01 1 144822013 144822013 C T NBPF9 Missense_Mutation p.S318L 0.15 tolerated(0.05) probably_damaging(0.975) TCGA-78-7150-01 1 147380719 147380719 G T GJA8 Missense_Mutation p.A213S 0.35 deleterious(0.01) probably_damaging(0.946) TCGA-78-7150-01 1 151380974 151380974 T A POGZ Silent p.A715A 0.35 TCGA-78-7150-01 1 151779873 151779873 A G RORC 3'UTR 0.18 TCGA-78-7150-01 1 152883987 152883987 C T IVL Nonsense_Mutation p.Q572* 0.22 TCGA-78-7150-01 1 157740380 157740380 G T FCRL2 Missense_Mutation p.N43K 0.38 tolerated(0.27) benign(0.06) TCGA-78-7150-01 1 158984538 158984538 G A IFI16 Missense_Mutation p.R23K 0.10 tolerated(0.71) benign(0.159) TCGA-78-7150-01 1 159036039 159036039 C T AIM2 Silent p.L159L 0.09 TCGA-78-7150-01 1 159036077 159036077 C G AIM2 Missense_Mutation p.E147Q 0.10 deleterious(0.05) possibly_damaging(0.521) TCGA-78-7150-01 1 159558225 159558225 G T APCS Missense_Mutation p.L133F 0.25 tolerated(0.1) probably_damaging(0.966) TCGA-78-7150-01 1 160136429 160136429 G A ATP1A4 Missense_Mutation p.G387S 0.36 deleterious(0) probably_damaging(1) TCGA-78-7150-01 1 162731110 162731110 T - DDR2 Frame_Shift_Del p.V323Sfs*35 0.25 TCGA-78-7150-01 1 166123994 166123994 C A FAM78B Intron 0.73 TCGA-78-7150-01 1 166135335 166135335 C T FAM78B Missense_Mutation p.A51T 0.26 deleterious(0) probably_damaging(0.993) TCGA-78-7150-01 1 166135338 166135338 T G FAM78B Missense_Mutation p.K50Q 0.25 deleterious(0.01) benign(0.177) TCGA-78-7150-01 1 169580899 169580899 G T SELP Missense_Mutation p.H326Q 0.26 tolerated(0.31) benign(0.098) TCGA-78-7150-01 1 169953793 169953793 A T KIFAP3 Silent p.I441I 0.28 TCGA-78-7150-01 1 171753468 171753468 G T METTL13 Nonsense_Mutation p.E248* 0.29 TCGA-78-7150-01 1 175304935 175304935 C T TNR Silent p.Q1181Q 0.16 TCGA-78-7150-01 1 176526212 176526212 G C PAPPA2 Missense_Mutation p.E252Q 0.22 tolerated(0.1) benign(0.107) TCGA-78-7150-01 1 176661345 176661345 G T PAPPA2 Nonsense_Mutation p.E839* 0.24 TCGA-78-7150-01 1 177249638 177249638 C A BRINP2 Missense_Mutation p.S442R 0.28 deleterious(0) possibly_damaging(0.694) TCGA-78-7150-01 1 178420782 178420782 G C RASAL2 Silent p.L568L 0.19 TCGA-78-7150-01 1 19578020 19578020 C A EMC1 5'UTR 0.33 TCGA-78-7150-01 1 196716443 196716443 G A CFH Silent p.%3D 0.12 TCGA-78-7150-01 1 201019618 201019618 G T CACNA1S Silent p.I1380I 0.25 TCGA-78-7150-01 1 207868041 207868041 T C CR1L Silent p.H269H 0.29 TCGA-78-7150-01 1 208216424 208216424 G A PLXNA2 Silent p.P1333P 0.25 TCGA-78-7150-01 1 21268017 21268017 G C EIF4G3 Missense_Mutation p.Q494E 0.15 tolerated_low_confidence(0.25) benign(0.007) TCGA-78-7150-01 1 220156114 220156114 C G EPRS Missense_Mutation p.V1125L 0.31 deleterious(0) possibly_damaging(0.877) TCGA-78-7150-01 1 230372141 230372141 C G GALNT2 Missense_Mutation p.I172M 0.36 deleterious(0) probably_damaging(0.992) TCGA-78-7150-01 1 231829759 231829759 G T DISC1 Missense_Mutation p.Q85H 0.35 tolerated(0.35) benign(0.009) TCGA-78-7150-01 1 237580399 237580399 G A RYR2 Nonsense_Mutation p.W275* 0.23 TCGA-78-7150-01 1 240255892 240255892 G T FMN2 Missense_Mutation p.E161D 0.22 unknown(0) TCGA-78-7150-01 1 240255893 240255893 G T FMN2 Missense_Mutation p.D162Y 0.22 unknown(0) TCGA-78-7150-01 1 248201848 248201848 C A OR2L2 Missense_Mutation p.F93L 0.30 tolerated(0.13) benign(0.033) TCGA-78-7150-01 1 248402386 248402386 G A OR2M4 Silent p.E52E 0.18 TCGA-78-7150-01 1 37947426 37947426 G C ZC3H12A Missense_Mutation p.V270L 0.50 deleterious(0) probably_damaging(0.993) TCGA-78-7150-01 1 42041248 42041248 C A HIVEP3 Missense_Mutation p.G1725V 0.18 benign(0.037) TCGA-78-7150-01 1 43772829 43772829 C T TIE1 Silent p.R219R 0.37 TCGA-78-7150-01 1 43913626 43913626 G C SZT2 Missense_Mutation p.E3126Q 0.27 deleterious(0.01) probably_damaging(0.98) TCGA-78-7150-01 1 44078461 44078461 G C PTPRF Intron 0.46 TCGA-78-7150-01 1 48713175 48713175 T C SLC5A9 Missense_Mutation p.L694S 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-78-7150-01 1 53699287 53699287 C G MAGOH Missense_Mutation p.R62T 0.11 deleterious(0.02) possibly_damaging(0.54) TCGA-78-7150-01 1 54474683 54474683 G A LDLRAD1 Missense_Mutation p.S197F 0.16 deleterious(0) probably_damaging(1) TCGA-78-7150-01 1 67327902 67327902 C G WDR78 Missense_Mutation p.E342Q 0.15 tolerated(0.31) benign(0.019) TCGA-78-7150-01 1 75009730 75009730 G T TNNI3K 3'UTR 0.23 TCGA-78-7150-01 1 75107024 75107024 C T C1orf173 Silent p.P145P 0.38 TCGA-78-7150-01 1 809715 809715 G A FAM41C 5'Flank 0.14 TCGA-78-7150-01 1 89652196 89652196 C T GBP4 Missense_Mutation p.M509I 0.28 deleterious(0) benign(0.091) TCGA-78-7150-01 1 91850784 91850784 T C HFM1 Silent p.T254T 0.32 TCGA-78-7150-01 1 97544484 97544484 C T DPYD 3'UTR 0.16 TCGA-78-7150-01 20 17622538 17622538 C T RRBP1 Silent p.A263A 0.42 TCGA-78-7150-01 20 30065683 30065683 G A REM1 Silent p.V131V 0.46 TCGA-78-7150-01 20 30309796 30309796 C G BCL2L1 Missense_Mutation p.D76H 0.23 deleterious(0.04) possibly_damaging(0.489) TCGA-78-7150-01 20 33500968 33500968 C T ACSS2 Silent p.F148F 0.15 TCGA-78-7150-01 20 34583046 34583046 T C CNBD2 Silent p.D314D 0.27 TCGA-78-7150-01 20 35240758 35240758 C G C20orf24 3'UTR 0.50 TCGA-78-7150-01 20 48260100 48260100 C T B4GALT5 Missense_Mutation p.G151D 0.19 deleterious(0) probably_damaging(1) TCGA-78-7150-01 20 60966081 60966081 A - CABLES2 Frame_Shift_Del p.L462Ffs*235 0.31 TCGA-78-7150-01 20 61937232 61937232 G A COL20A1 Splice_Site p.X113_splice 0.18 TCGA-78-7150-01 20 62366802 62366802 G T ZGPAT Missense_Mutation p.S448I 0.38 deleterious(0) possibly_damaging(0.781) TCGA-78-7150-01 21 37775077 37775077 C T CHAF1B Missense_Mutation p.H229Y 0.16 tolerated(0.15) possibly_damaging(0.76) TCGA-78-7150-01 21 45651216 45651216 G A ICOSLG Missense_Mutation p.A270V 0.31 tolerated(0.25) possibly_damaging(0.509) TCGA-78-7150-01 21 47533965 47533965 C A COL6A2 Missense_Mutation p.P260H 0.18 tolerated(0.05) probably_damaging(0.984) TCGA-78-7150-01 21 47836669 47836669 C T PCNT Silent p.S2279S 0.38 TCGA-78-7150-01 22 22782134 22782134 C T IGLV5-37 Silent p.P44P 0.28 TCGA-78-7150-01 22 22892468 22892468 C T PRAME Silent p.K211K 0.12 TCGA-78-7150-01 22 26343735 26343735 G C MYO18B Missense_Mutation p.D1897H 0.29 deleterious(0) probably_damaging(0.961) TCGA-78-7150-01 22 32193597 32193597 A T DEPDC5 Missense_Mutation p.Q260L 0.25 deleterious(0) probably_damaging(0.998) TCGA-78-7150-01 22 39714471 39714472 - G RPL3 Frame_Shift_Ins p.T44Hfs*65 0.22 TCGA-78-7150-01 22 40658159 40658159 G A TNRC6B Missense_Mutation p.E147K 0.24 tolerated(0.51) benign(0.129) TCGA-78-7150-01 22 42054269 42054269 G C XRCC6 Missense_Mutation p.E479Q 0.08 deleterious(0) probably_damaging(0.917) TCGA-78-7150-01 22 44022376 44022376 A C EFCAB6 Missense_Mutation p.C806G 0.33 tolerated(0.14) benign(0.01) TCGA-78-7150-01 22 50693762 50693762 C T MAPK12 Silent p.A296A 0.12 TCGA-78-7150-01 2 105892133 105892133 C T TGFBRAP1 Missense_Mutation p.V517I 0.09 tolerated(0.81) benign(0.001) TCGA-78-7150-01 2 108488018 108488018 C T RGPD4 Silent p.G1186G 0.26 TCGA-78-7150-01 2 120219423 120219423 C A SCTR Missense_Mutation p.G264C 0.52 deleterious(0) probably_damaging(0.993) TCGA-78-7150-01 2 137814327 137814327 C G THSD7B Missense_Mutation p.C159W 0.46 deleterious(0) probably_damaging(0.966) TCGA-78-7150-01 2 155098581 155098581 C T GALNT13 Missense_Mutation p.T117I 0.42 deleterious(0) possibly_damaging(0.756) TCGA-78-7150-01 2 155555914 155555914 C A KCNJ3 Silent p.L209L 0.42 TCGA-78-7150-01 2 160898542 160898542 C A PLA2R1 Missense_Mutation p.D221Y 0.56 deleterious(0.04) probably_damaging(0.947) TCGA-78-7150-01 2 170356080 170356080 G C BBS5 Missense_Mutation p.V256L 0.29 tolerated(0.09) benign(0.013) TCGA-78-7150-01 2 179605651 179605651 C G TTN Missense_Mutation p.L4103F 0.18 TCGA-78-7150-01 2 185803303 185803303 G T ZNF804A Missense_Mutation p.M1060I 0.67 tolerated(0.21) benign(0.01) TCGA-78-7150-01 2 190927334 190927334 C G MSTN 5'UTR 0.71 TCGA-78-7150-01 2 198950263 198950263 G A PLCL1 Silent p.P674P 0.21 TCGA-78-7150-01 2 207027266 207027266 G A EEF1B2 Missense_Mutation p.D151N 0.09 deleterious(0.01) possibly_damaging(0.457) TCGA-78-7150-01 2 209302497 209302497 G A PTH2R Missense_Mutation p.R101Q 0.70 deleterious(0) probably_damaging(1) TCGA-78-7150-01 2 220315959 220315959 G A SPEG Missense_Mutation p.V739M 0.05 probably_damaging(0.987) TCGA-78-7150-01 2 220404716 220404716 G A CHPF Silent p.L573L 0.63 TCGA-78-7150-01 2 223559872 223559872 G T MOGAT1 Nonsense_Mutation p.E240* 0.52 TCGA-78-7150-01 2 228881270 228881270 C T SPHKAP Missense_Mutation p.D1434N 0.56 deleterious(0) possibly_damaging(0.881) TCGA-78-7150-01 2 234343033 234343033 C T DGKD Missense_Mutation p.T119I 0.05 deleterious(0) probably_damaging(0.934) TCGA-78-7150-01 2 234590805 234590805 G A UGT1A7 Silent p.V74V 0.11 TCGA-78-7150-01 2 238268032 238268032 C T COL6A3 Splice_Site p.X2095_splice 0.13 TCGA-78-7150-01 2 238475665 238475665 C T PRLH Silent p.I37I 0.35 TCGA-78-7150-01 2 241528798 241528798 A T CAPN10 Silent p.P60P 0.09 TCGA-78-7150-01 2 242128153 242128153 G C ANO7 Missense_Mutation p.E43Q 0.12 deleterious_low_confidence(0.02) possibly_damaging(0.827) TCGA-78-7150-01 2 32774406 32774406 C T BIRC6 Silent p.V4334V 0.06 TCGA-78-7150-01 2 55912132 55912132 G C PNPT1 Missense_Mutation p.L117V 0.54 deleterious(0.01) probably_damaging(0.964) TCGA-78-7150-01 2 61416060 61416060 C G USP34 Missense_Mutation p.E3340Q 0.12 tolerated(0.18) benign(0.002) TCGA-78-7150-01 2 61622131 61622131 C G USP34 Missense_Mutation p.E204Q 0.63 deleterious(0.01) probably_damaging(0.954) TCGA-78-7150-01 2 79384798 79384798 C G REG3A Missense_Mutation p.W120C 0.57 deleterious(0) probably_damaging(1) TCGA-78-7150-01 2 89521245 89521245 C A IGKV2-28 Silent p.L98L 0.45 TCGA-78-7150-01 2 90044277 90044277 C A IGKV2D-24 Silent p.G66G 0.07 TCGA-78-7150-01 2 90060893 90060893 G T IGKV6D-21 Missense_Mutation p.R80S 0.48 deleterious(0) probably_damaging(0.962) TCGA-78-7150-01 3 100951668 100951668 C G IMPG2 Missense_Mutation p.D1064H 0.31 deleterious(0) possibly_damaging(0.781) TCGA-78-7150-01 3 107096565 107096565 G A CCDC54 Missense_Mutation p.G44E 0.34 tolerated(0.25) benign(0.049) TCGA-78-7150-01 3 109049546 109049546 C A DPPA4 Silent p.V168V 0.23 TCGA-78-7150-01 3 110831156 110831156 T A PVRL3 Missense_Mutation p.I147N 0.41 deleterious(0) probably_damaging(0.913) TCGA-78-7150-01 3 121202241 121202241 C G POLQ Missense_Mutation p.D1988H 0.15 deleterious(0) probably_damaging(1) TCGA-78-7150-01 3 121351394 121351394 G - HCLS1 Frame_Shift_Del p.P342Qfs*113 0.14 TCGA-78-7150-01 3 123357040 123357040 C T MYLK Silent p.E1613E 0.13 TCGA-78-7150-01 3 129389241 129389241 C A TMCC1 Missense_Mutation p.E481D 0.41 tolerated(0.24) benign(0.046) TCGA-78-7150-01 3 133557009 133557009 C A RAB6B Splice_Site p.X165_splice 0.33 TCGA-78-7150-01 3 142274977 142274977 T C ATR Missense_Mutation p.K695E 0.33 tolerated(0.55) benign(0.021) TCGA-78-7150-01 3 143082332 143082336 TCAAA - SLC9A9 Frame_Shift_Del p.F532Pfs*21 0.08 TCGA-78-7150-01 3 147128441 147128441 T A ZIC1 Missense_Mutation p.V181E 0.16 deleterious(0.01) probably_damaging(0.956) TCGA-78-7150-01 3 16411594 16411594 C G RFTN1 Missense_Mutation p.G340A 0.18 deleterious(0.04) possibly_damaging(0.449) TCGA-78-7150-01 3 164908564 164908564 G T SLITRK3 Missense_Mutation p.L19I 0.28 tolerated(0.12) probably_damaging(0.991) TCGA-78-7150-01 3 167000157 167000157 G T ZBBX Missense_Mutation p.A708D 0.19 deleterious(0) possibly_damaging(0.871) TCGA-78-7150-01 3 180328193 180328193 G C TTC14 Missense_Mutation p.V726L 0.15 tolerated_low_confidence(0.31) unknown(0) TCGA-78-7150-01 3 186015891 186015891 G A DGKG Missense_Mutation p.P91L 0.26 tolerated(0.12) benign(0.002) TCGA-78-7150-01 3 186274291 186274291 G C TBCCD1 Missense_Mutation p.L256V 0.11 deleterious(0.01) probably_damaging(0.936) TCGA-78-7150-01 3 186450463 186450463 G A KNG1 Silent p.Q310Q 0.30 TCGA-78-7150-01 3 186459574 186459574 T C KNG1 Silent p.H463H 0.29 TCGA-78-7150-01 3 19575181 19575181 C A KCNH8 Silent p.R972R 0.21 TCGA-78-7150-01 3 27161315 27161315 T A NEK10 Silent p.T1099T 0.14 TCGA-78-7150-01 3 27243978 27243978 G T NEK10 Missense_Mutation p.Q721K 0.14 deleterious(0) possibly_damaging(0.696) TCGA-78-7150-01 3 27243984 27243984 G A NEK10 Missense_Mutation p.L719F 0.14 deleterious(0) probably_damaging(0.963) TCGA-78-7150-01 3 27243985 27243985 G A NEK10 Silent p.I718I 0.14 TCGA-78-7150-01 3 27473044 27473044 T C SLC4A7 Missense_Mutation p.R290G 0.25 tolerated(0.16) possibly_damaging(0.519) TCGA-78-7150-01 3 36893753 36893753 C T TRANK1 Missense_Mutation p.G1501S 0.31 deleterious(0) possibly_damaging(0.794) TCGA-78-7150-01 3 36896851 36896851 G A TRANK1 Silent p.I1410I 0.25 TCGA-78-7150-01 3 39306967 39306967 T A CX3CR1 Missense_Mutation p.H377L 0.26 tolerated(0.58) benign(0.033) TCGA-78-7150-01 3 46496868 46496868 C T LTF Silent p.L188L 0.30 TCGA-78-7150-01 3 47088029 47088029 G C SETD2 Missense_Mutation p.A2349G 0.19 tolerated(0.61) benign(0.031) TCGA-78-7150-01 3 47458687 47458687 G A SCAP Missense_Mutation p.A994V 0.20 deleterious(0) possibly_damaging(0.821) TCGA-78-7150-01 3 48678894 48678894 C T CELSR3 Missense_Mutation p.C2963Y 0.18 deleterious_low_confidence(0.03) benign(0.406) TCGA-78-7150-01 3 52004084 52004084 G A ABHD14B Missense_Mutation p.P110S 0.29 deleterious(0.04) probably_damaging(1) TCGA-78-7150-01 3 53810922 53810922 T A CACNA1D Missense_Mutation p.L1529H 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-78-7150-01 3 56627757 56627757 G A CCDC66 Missense_Mutation p.S436N 0.15 tolerated(0.13) benign(0.012) TCGA-78-7150-01 3 89468424 89468424 A G EPHA3 Missense_Mutation p.K653R 0.18 deleterious(0.01) probably_damaging(0.987) TCGA-78-7150-01 3 89498443 89498443 C G EPHA3 Missense_Mutation p.S805R 0.18 deleterious(0) probably_damaging(0.998) TCGA-78-7150-01 3 8977576 8977576 C G RAD18 Missense_Mutation p.D290H 0.16 deleterious(0) probably_damaging(1) TCGA-78-7150-01 3 9791867 9791867 G T OGG1 5'UTR 0.38 TCGA-78-7150-01 3 98520492 98520492 T G DCBLD2 Missense_Mutation p.K558Q 0.21 deleterious(0.02) benign(0.436) TCGA-78-7150-01 3 98538181 98538181 C G DCBLD2 Missense_Mutation p.D318H 0.17 deleterious(0.02) probably_damaging(0.928) TCGA-78-7150-01 4 10079485 10079485 C A WDR1 Missense_Mutation p.E487D 0.43 tolerated(0.44) benign(0.002) TCGA-78-7150-01 4 107845337 107845337 C A DKK2 Missense_Mutation p.R185L 0.36 deleterious(0) probably_damaging(0.982) TCGA-78-7150-01 4 113475105 113475105 C A C4orf21 Missense_Mutation p.Q1744H 0.23 deleterious(0.02) possibly_damaging(0.459) TCGA-78-7150-01 4 113540608 113540608 G A C4orf21 Missense_Mutation p.S197F 0.29 deleterious(0) possibly_damaging(0.563) TCGA-78-7150-01 4 115858642 115858642 G C NDST4 Missense_Mutation p.I413M 0.11 deleterious(0.02) benign(0.287) TCGA-78-7150-01 4 119944633 119944633 G A SYNPO2 Missense_Mutation p.E52K 0.27 deleterious(0) probably_damaging(0.971) TCGA-78-7150-01 4 120548406 120548406 G T PDE5A Intron 0.21 TCGA-78-7150-01 4 125591188 125591188 T C ANKRD50 Missense_Mutation p.M1082V 0.19 tolerated(0.97) benign(0.055) TCGA-78-7150-01 4 128651878 128651878 G A SLC25A31 Missense_Mutation p.E60K 0.16 deleterious(0.02) benign(0.236) TCGA-78-7150-01 4 1343515 1343515 C T UVSSA Missense_Mutation p.P101L 0.32 tolerated(0.06) probably_damaging(1) TCGA-78-7150-01 4 144359702 144359702 C T GAB1 Missense_Mutation p.P382S 0.16 tolerated(0.24) benign(0.138) TCGA-78-7150-01 4 149002645 149002645 C T NR3C2 Silent p.V935V 0.19 TCGA-78-7150-01 4 155507040 155507040 G T FGA Missense_Mutation p.P514H 0.26 deleterious(0.02) probably_damaging(0.948) TCGA-78-7150-01 4 156638369 156638369 C A GUCY1A3 Missense_Mutation p.T544N 0.24 tolerated(0.07) benign(0.152) TCGA-78-7150-01 4 159568066 159568066 C G RXFP1 Missense_Mutation p.S490C 0.22 tolerated(0.14) benign(0.03) TCGA-78-7150-01 4 164050300 164050300 G A NAF1 Nonsense_Mutation p.Q412* 0.26 TCGA-78-7150-01 4 169362539 169362539 G C DDX60L Missense_Mutation p.L415V 0.31 tolerated(0.63) benign(0.02) TCGA-78-7150-01 4 177136718 177136718 G C ASB5 3'UTR 0.22 TCGA-78-7150-01 4 186425632 186425632 A G PDLIM3 Missense_Mutation p.I301T 0.23 deleterious(0) possibly_damaging(0.788) TCGA-78-7150-01 4 20535276 20535276 G A SLIT2 Silent p.T590T 0.24 TCGA-78-7150-01 4 26432131 26432131 G C RBPJ Missense_Mutation p.E392Q 0.14 tolerated(0.1) possibly_damaging(0.475) TCGA-78-7150-01 4 26490979 26490979 G A CCKAR Silent p.L80L 0.18 TCGA-78-7150-01 4 2945798 2945798 A T NOP14 Splice_Site p.X631_splice 0.33 TCGA-78-7150-01 4 39105076 39105076 C T KLHL5 Silent p.P536P 0.13 TCGA-78-7150-01 4 39460773 39460773 G - LIAS Frame_Shift_Del p.R15Gfs*14 0.23 TCGA-78-7150-01 4 39512080 39512080 G C UGDH Missense_Mutation p.P186A 0.12 tolerated(0.15) benign(0.001) TCGA-78-7150-01 4 46967176 46967176 A G GABRA4 Silent p.Y315Y 0.29 TCGA-78-7150-01 4 47033973 47033973 G T GABRB1 Silent p.V41V 0.24 TCGA-78-7150-01 4 48542798 48542798 C G FRYL Missense_Mutation p.R1956P 0.33 deleterious(0.03) probably_damaging(0.998) TCGA-78-7150-01 4 60018 60018 G A ZNF595 Silent p.K66K 0.06 TCGA-78-7150-01 4 70074182 70074182 G C UGT2B11 Missense_Mutation p.Q297E 0.17 deleterious(0.02) possibly_damaging(0.867) TCGA-78-7150-01 4 85419026 85419026 G C NKX6-1 Missense_Mutation p.S119W 0.23 deleterious_low_confidence(0.04) unknown(0) TCGA-78-7150-01 4 85687123 85687123 C T WDFY3 Silent p.E1676E 0.42 TCGA-78-7150-01 4 90170789 90170789 G A GPRIN3 Missense_Mutation p.S158L 0.18 tolerated(0.09) benign(0.122) TCGA-78-7150-01 4 944993 944993 A T TMEM175 Splice_Site p.X97_splice 0.26 TCGA-78-7150-01 4 94750827 94750827 C A ATOH1 Missense_Mutation p.N250K 0.48 tolerated(0.87) benign(0.003) TCGA-78-7150-01 4 952199 952199 G A TMEM175 Missense_Mutation p.R477Q 0.32 tolerated(0.27) benign(0.012) TCGA-78-7150-01 5 118969672 118969672 C T FAM170A Nonsense_Mutation p.R77* 0.19 TCGA-78-7150-01 5 127714528 127714528 A G FBN2 Silent p.P553P 0.52 TCGA-78-7150-01 5 131973867 131973867 G A RAD50 Silent p.K1190K 0.33 TCGA-78-7150-01 5 140188961 140188961 G C PCDHA4 Missense_Mutation p.G730A 0.44 tolerated_low_confidence(0.13) benign(0.052) TCGA-78-7150-01 5 140230279 140230279 G A PCDHA9 Silent p.A733A 0.50 TCGA-78-7150-01 5 140554444 140554444 G T PCDHB7 Silent p.A676A 0.29 TCGA-78-7150-01 5 140604476 140604476 G A PCDHB14 Missense_Mutation p.A467T 0.42 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-78-7150-01 5 140773984 140773984 G T PCDHGA8 Missense_Mutation p.S535I 0.19 tolerated_low_confidence(0.1) benign(0.436) TCGA-78-7150-01 5 140773985 140773985 C T PCDHGA8 Silent p.S535S 0.18 TCGA-78-7150-01 5 146997527 146997527 A T JAKMIP2 Missense_Mutation p.Y765N 0.24 tolerated(0.29) possibly_damaging(0.549) TCGA-78-7150-01 5 173359497 173359497 A G CPEB4 Missense_Mutation p.I418V 0.53 tolerated_low_confidence(0.09) benign(0) TCGA-78-7150-01 5 179225515 179225515 C T MGAT4B Missense_Mutation p.D489N 0.17 tolerated(0.23) benign(0.005) TCGA-78-7150-01 5 19473630 19473630 G T CDH18 Missense_Mutation p.P693H 0.18 deleterious(0) probably_damaging(0.934) TCGA-78-7150-01 5 33527457 33527457 T G ADAMTS12 Missense_Mutation p.K1541Q 0.24 deleterious(0.04) benign(0.069) TCGA-78-7150-01 5 35867450 35867450 A G IL7R Silent p.L88L 0.17 TCGA-78-7150-01 5 40998141 40998141 A G MROH2B 3'UTR 0.21 TCGA-78-7150-01 5 41004621 41004621 G A MROH2B Missense_Mutation p.H1341Y 0.31 tolerated(0.11) benign(0.005) TCGA-78-7150-01 5 41870434 41870434 G A OXCT1 Silent p.S9S 0.18 TCGA-78-7150-01 5 45396642 45396642 G C HCN1 Silent p.T394T 0.25 TCGA-78-7150-01 5 5146374 5146374 G A ADAMTS16 Missense_Mutation p.G103S 0.38 tolerated(0.06) probably_damaging(0.985) TCGA-78-7150-01 5 76649204 76649204 G T PDE8B Silent p.L380L 0.58 TCGA-78-7150-01 5 7804778 7804778 C G ADCY2 Missense_Mutation p.S952R 0.14 tolerated(0.09) benign(0.37) TCGA-78-7150-01 5 7870910 7870910 G T MTRR Missense_Mutation p.M28I 0.44 tolerated(0.08) benign(0.445) TCGA-78-7150-01 5 90106906 90106906 C T GPR98 Missense_Mutation p.R5277C 0.38 benign(0) TCGA-78-7150-01 6 111583529 111583529 A G KIAA1919 Missense_Mutation p.S33G 0.41 tolerated(0.18) benign(0.008) TCGA-78-7150-01 6 111650886 111650886 C G REV3L Missense_Mutation p.R2697T 0.26 deleterious(0) probably_damaging(0.999) TCGA-78-7150-01 6 117677871 117677871 A - ROS1 Frame_Shift_Del p.F1354Lfs*35 0.23 TCGA-78-7150-01 6 128134390 128134390 G T THEMIS Missense_Mutation p.L466I 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-78-7150-01 6 132021854 132021854 T C OR2A4 Missense_Mutation p.R230G 0.10 tolerated(1) benign(0.002) TCGA-78-7150-01 6 146264414 146264414 A T SHPRH Missense_Mutation p.F701L 0.37 deleterious(0.01) probably_damaging(0.963) TCGA-78-7150-01 6 146268732 146268732 A C SHPRH Missense_Mutation p.I370S 0.15 deleterious(0) probably_damaging(1) TCGA-78-7150-01 6 152605206 152605206 C A SYNE1 Silent p.A6038A 0.55 TCGA-78-7150-01 6 153296193 153296193 T G FBXO5 Missense_Mutation p.I223L 0.45 tolerated(0.19) benign(0.004) TCGA-78-7150-01 6 15496899 15496899 G A JARID2 Silent p.L481L 0.19 TCGA-78-7150-01 6 159188057 159188057 A T EZR Missense_Mutation p.N550K 0.41 tolerated(0.07) probably_damaging(0.967) TCGA-78-7150-01 6 165713854 165713854 T A C6orf118 Missense_Mutation p.K292M 0.11 deleterious(0) probably_damaging(0.998) TCGA-78-7150-01 6 26124391 26124391 A G HIST1H2AC 5'Flank 0.29 TCGA-78-7150-01 6 26234874 26234874 C G HIST1H1D Missense_Mutation p.Q96H 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-78-7150-01 6 26452130 26452130 G A BTN3A3 Missense_Mutation p.V416M 0.14 deleterious(0.03) probably_damaging(0.919) TCGA-78-7150-01 6 27833191 27833191 C G HIST1H2AL Missense_Mutation p.S20C 0.25 deleterious_low_confidence(0) unknown(0) TCGA-78-7150-01 6 29640858 29640858 G - ZFP57 Frame_Shift_Del p.Q344Rfs*11 0.14 TCGA-78-7150-01 6 31597526 31597526 G A PRRC2A Missense_Mutation p.D720N 0.33 possibly_damaging(0.539) TCGA-78-7150-01 6 31737788 31737788 G C VWA7 Nonsense_Mutation p.S397* 0.08 TCGA-78-7150-01 6 32163228 32163228 C T NOTCH4 Missense_Mutation p.E2000K 0.16 tolerated_low_confidence(0.08) benign(0.001) TCGA-78-7150-01 6 32260881 32260881 A T C6orf10 Silent p.G523G 0.31 TCGA-78-7150-01 6 32802973 32802973 G A TAP2 Silent p.P301P 0.19 TCGA-78-7150-01 6 35053622 35053622 C T ANKS1A Missense_Mutation p.S1071F 0.14 deleterious(0.01) benign(0.372) TCGA-78-7150-01 6 43638551 43638551 G A RSPH9 Missense_Mutation p.G250R 0.06 tolerated_low_confidence(0.49) benign(0.002) TCGA-78-7150-01 6 52993489 52993489 T C GCM1 Missense_Mutation p.S276G 0.24 tolerated(0.29) benign(0.005) TCGA-78-7150-01 6 54806260 54806260 A G FAM83B Missense_Mutation p.K831E 0.23 tolerated(0.17) benign(0.18) TCGA-78-7150-01 6 63989943 63989943 A T LGSN Missense_Mutation p.L505I 0.56 deleterious(0.02) possibly_damaging(0.627) TCGA-78-7150-01 6 656914 656914 C T HUS1B Missense_Mutation p.G11S 0.27 tolerated(0.55) benign(0.01) TCGA-78-7150-01 6 7229349 7229349 G A RREB1 Silent p.V339V 0.16 TCGA-78-7150-01 6 72889469 72889469 C A RIMS1 Silent p.P221P 0.26 TCGA-78-7150-01 6 7580467 7580467 G C DSP Silent p.L1348L 0.13 TCGA-78-7150-01 6 7581116 7581116 G C DSP Missense_Mutation p.E1565Q 0.26 benign(0.024) TCGA-78-7150-01 6 90402199 90402199 T A MDN1 Missense_Mutation p.D3517V 0.36 possibly_damaging(0.627) TCGA-78-7150-01 6 90421912 90421912 C G MDN1 Silent p.L2498L 0.38 TCGA-78-7150-01 6 96651885 96651885 C A FUT9 Nonsense_Mutation p.S285* 0.37 TCGA-78-7150-01 6 97562061 97562061 A G KLHL32 Missense_Mutation p.M344V 0.08 tolerated(0.08) benign(0.071) TCGA-78-7150-01 7 100075071 100075071 C A TSC22D4 Missense_Mutation p.E197D 0.22 tolerated_low_confidence(0.1) benign(0.005) TCGA-78-7150-01 7 100346018 100346018 G A ZAN Missense_Mutation p.G392S 0.18 possibly_damaging(0.6) TCGA-78-7150-01 7 100552254 100552254 C A MUC3A Silent p.P335P 0.10 TCGA-78-7150-01 7 117021089 117021089 G A ASZ1 Silent p.T307T 0.16 TCGA-78-7150-01 7 117021090 117021090 G T ASZ1 Missense_Mutation p.T307N 0.16 deleterious(0.02) possibly_damaging(0.772) TCGA-78-7150-01 7 127224822 127224822 C T GCC1 Missense_Mutation p.G139S 0.13 tolerated(0.13) probably_damaging(0.972) TCGA-78-7150-01 7 134143774 134143774 G C AKR1B1 Missense_Mutation p.P14R 0.24 deleterious(0.01) possibly_damaging(0.678) TCGA-78-7150-01 7 142750304 142750304 C A OR6V1 Silent p.T289T 0.24 TCGA-78-7150-01 7 142919733 142919733 G C TAS2R40 Missense_Mutation p.E188Q 0.11 deleterious(0.04) benign(0.403) TCGA-78-7150-01 7 148427226 148427226 C G CUL1 Silent p.T4T 0.16 TCGA-78-7150-01 7 152346361 152346361 G A XRCC2 Missense_Mutation p.S70L 0.19 tolerated(0.06) possibly_damaging(0.828) TCGA-78-7150-01 7 15601560 15601560 C A AGMO 5'UTR 0.47 TCGA-78-7150-01 7 18767237 18767237 C G HDAC9 Missense_Mutation p.S589C 0.45 deleterious(0.02) benign(0.306) TCGA-78-7150-01 7 18767262 18767262 G T HDAC9 Silent p.A597A 0.45 TCGA-78-7150-01 7 27181551 27181551 A G HOXA5 Missense_Mutation p.I239T 0.41 deleterious(0) probably_damaging(1) TCGA-78-7150-01 7 31683324 31683324 C T CCDC129 Silent p.T806T 0.27 TCGA-78-7150-01 7 38433708 38433708 C A AMPH Missense_Mutation p.G502V 0.40 deleterious(0.05) benign(0.082) TCGA-78-7150-01 7 44191930 44191930 C T GCK Silent p.V102V 0.24 TCGA-78-7150-01 7 49842437 49842440 GTAT - VWC2 Splice_Site p.X276_splice 0.15 TCGA-78-7150-01 7 5104216 5104216 G A RBAK Missense_Mutation p.E377K 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-78-7150-01 7 56006821 56006821 C A ZNF713 Missense_Mutation p.H139N 0.38 tolerated(0.24) benign(0.016) TCGA-78-7150-01 7 57188633 57188633 G T ZNF479 Silent p.V163V 0.24 TCGA-78-7150-01 7 6048935 6048935 C T AIMP2 5'UTR 0.28 TCGA-78-7150-01 7 75174020 75174020 G C HIP1 Missense_Mutation p.S913R 0.26 deleterious(0) probably_damaging(0.997) TCGA-78-7150-01 7 86522305 86522305 C T KIAA1324L Missense_Mutation p.G933S 0.38 tolerated(1) benign(0.217) TCGA-78-7150-01 7 87746095 87746095 A C ADAM22 Missense_Mutation p.R191S 0.20 tolerated(0.32) benign(0.002) TCGA-78-7150-01 7 92764557 92764557 T C SAMD9L Missense_Mutation p.D243G 0.40 deleterious(0.03) benign(0.422) TCGA-78-7150-01 7 92923899 92923899 G T CCDC132 Missense_Mutation p.R373L 0.18 tolerated(0.15) benign(0.44) TCGA-78-7150-01 8 113304782 113304782 A C CSMD3 Silent p.P2924P 0.60 TCGA-78-7150-01 8 116632237 116632237 C A TRPS1 Nonsense_Mutation p.E30* 0.36 TCGA-78-7150-01 8 121354682 121354682 C T COL14A1 Nonsense_Mutation p.Q1629* 0.11 TCGA-78-7150-01 8 139164596 139164596 G C FAM135B Missense_Mutation p.P708A 0.66 deleterious(0.05) benign(0.124) TCGA-78-7150-01 8 139774680 139774680 C T COL22A1 Silent p.G611G 0.50 TCGA-78-7150-01 8 144776287 144776287 G A ZNF707 Missense_Mutation p.E235K 0.27 tolerated(0.27) benign(0.094) TCGA-78-7150-01 8 144891822 144891822 C T SCRIB Missense_Mutation p.E533K 0.10 benign(0.117) TCGA-78-7150-01 8 53084928 53084928 C G ST18 Missense_Mutation p.D165H 0.11 deleterious(0.03) benign(0.021) TCGA-78-7150-01 8 72946612 72946612 T C TRPA1 Silent p.R852R 0.23 TCGA-78-7150-01 8 77766341 77766341 C A ZFHX4 Missense_Mutation p.P2395H 0.35 probably_damaging(0.997) TCGA-78-7150-01 8 93088214 93088214 C T RUNX1T1 Intron 0.51 TCGA-78-7150-01 8 9760960 9760960 T A LINC00599 5'Flank 0.27 TCGA-78-7150-01 9 123169402 123169402 G A CDK5RAP2 Silent p.S1617S 0.27 TCGA-78-7150-01 9 125895246 125895246 G C STRBP Missense_Mutation p.A592G 0.56 tolerated(0.32) benign(0.021) TCGA-78-7150-01 9 13119517 13119517 A C MPDZ Missense_Mutation p.V1788G 0.23 deleterious(0) possibly_damaging(0.844) TCGA-78-7150-01 9 134525549 134525549 G A RAPGEF1 Silent p.T95T 0.43 TCGA-78-7150-01 9 136599114 136599114 C A SARDH Missense_Mutation p.R61L 0.47 tolerated(0.16) benign(0.019) TCGA-78-7150-01 9 136642532 136642532 C A VAV2 Missense_Mutation p.K648N 0.42 deleterious(0) possibly_damaging(0.9) TCGA-78-7150-01 9 139794921 139794921 C T TRAF2 Silent p.A105A 0.12 TCGA-78-7150-01 9 18928121 18928121 G A FAM154A Nonsense_Mutation p.Q452* 0.37 TCGA-78-7150-01 9 32633792 32633792 G T TAF1L Missense_Mutation p.Q596K 0.09 tolerated(0.22) benign(0.262) TCGA-78-7150-01 9 33266023 33266023 G C CHMP5 Missense_Mutation p.E29Q 0.39 deleterious(0.05) possibly_damaging(0.547) TCGA-78-7150-01 9 35675908 35675908 T G CA9 Missense_Mutation p.L195R 0.22 deleterious(0) probably_damaging(1) TCGA-78-7150-01 9 39888179 39888179 C A SPATA31A2 Nonsense_Mutation p.S389* 0.42 TCGA-78-7150-01 9 6602126 6602126 T A GLDC Missense_Mutation p.N380Y 0.27 deleterious(0) probably_damaging(0.99) TCGA-78-7150-01 9 74865665 74865665 G T GDA Splice_Site p.X454_splice 0.45 TCGA-78-7150-01 9 77286800 77286800 G C RORB Missense_Mutation p.D403H 0.41 deleterious(0.04) benign(0.038) TCGA-78-7150-01 9 95179237 95179237 G A OMD Silent p.L202L 0.28 TCGA-78-7150-01 X 100183497 100183497 C T XKRX 5'UTR 0.50 TCGA-78-7150-01 X 102192642 102192642 C T RAB40AL Silent p.F132F 0.36 TCGA-78-7150-01 X 109964630 109964630 T A CHRDL1 Missense_Mutation p.T144S 0.63 tolerated(0.15) benign(0.01) TCGA-78-7150-01 X 110497506 110497506 C A CAPN6 Missense_Mutation p.W97C 0.66 deleterious(0) probably_damaging(0.971) TCGA-78-7150-01 X 110497507 110497507 C A CAPN6 Missense_Mutation p.W97L 0.64 deleterious(0.01) possibly_damaging(0.876) TCGA-78-7150-01 X 120009314 120009314 C T CT47B1 Missense_Mutation p.G71S 0.61 tolerated(0.14) possibly_damaging(0.703) TCGA-78-7150-01 X 123517897 123517897 C T TENM1 Missense_Mutation p.S2295N 0.59 tolerated(0.09) benign(0.05) TCGA-78-7150-01 X 129771355 129771355 C - ENOX2 Frame_Shift_Del p.E416Kfs*17 0.37 TCGA-78-7150-01 X 132160639 132160639 T A USP26 Missense_Mutation p.Q537L 0.61 deleterious(0) possibly_damaging(0.551) TCGA-78-7150-01 X 13778481 13778481 G T OFD1 Missense_Mutation p.R634S 0.52 deleterious(0) possibly_damaging(0.861) TCGA-78-7150-01 X 140995288 140995288 G A MAGEC1 Missense_Mutation p.E700K 0.29 deleterious_low_confidence(0) benign(0.292) TCGA-78-7150-01 X 148798532 148798532 C A MAGEA11 3'UTR 0.80 TCGA-78-7150-01 X 150773189 150773189 A T PASD1 Missense_Mutation p.N34Y 0.46 deleterious(0.04) possibly_damaging(0.805) TCGA-78-7150-01 X 153130418 153130418 G A L1CAM Silent p.F968F 0.32 TCGA-78-7150-01 X 37587654 37587654 G T XK Missense_Mutation p.S425I 0.60 deleterious_low_confidence(0.03) benign(0.08) TCGA-78-7150-01 X 40506402 40506402 G A CXorf38 Intron 0.73 TCGA-78-7150-01 X 47104483 47104483 G A USP11 Missense_Mutation p.E762K 0.33 deleterious(0.02) probably_damaging(0.986) TCGA-78-7150-01 X 50350668 50350668 C A SHROOM4 Missense_Mutation p.E1158D 0.60 tolerated(0.34) benign(0.005) TCGA-78-7150-01 X 64955189 64955189 G T MSN Missense_Mutation p.G286W 0.76 deleterious(0) probably_damaging(1) TCGA-78-7150-01 X 70524989 70524989 G A ITGB1BP2 Missense_Mutation p.D331N 0.30 deleterious(0.01) unknown(0) TCGA-78-7150-01 X 74280087 74280087 C G ABCB7 Missense_Mutation p.D673H 0.24 deleterious(0.02) probably_damaging(0.929) TCGA-78-7150-01 X 79932289 79932289 C T BRWD3 Missense_Mutation p.R1743K 0.33 tolerated_low_confidence(0.65) unknown(0) TCGA-78-7150-01 X 91137977 91137977 C A PCDH11X Intron 0.20 TCGA-78-7150-01 X 91137978 91137978 C G PCDH11X Intron 0.20 TCGA-78-7152-01 10 102778631 102778631 G A PDZD7 Silent p.L424L 0.17 TCGA-78-7152-01 10 129676535 129676535 C A CLRN3 Missense_Mutation p.V187F 0.32 deleterious(0.05) possibly_damaging(0.759) TCGA-78-7152-01 10 135440196 135440196 G C FRG2B Missense_Mutation p.C17W 0.04 tolerated(0.19) benign(0.223) TCGA-78-7152-01 10 38343844 38343844 C G ZNF33A Missense_Mutation p.F264L 0.22 tolerated(0.71) benign(0.003) TCGA-78-7152-01 10 387205 387205 G C DIP2C Missense_Mutation p.S1173C 0.05 deleterious(0) probably_damaging(0.998) TCGA-78-7152-01 10 49447710 49447710 C T FRMPD2 Silent p.Q242Q 0.09 TCGA-78-7152-01 10 71136840 71136840 C T HK1 Silent p.I346I 0.17 TCGA-78-7152-01 10 73045160 73045160 C T UNC5B Missense_Mutation p.P176S 0.18 deleterious(0.01) benign(0.362) TCGA-78-7152-01 10 94297241 94297241 G A IDE Silent p.T55T 0.20 TCGA-78-7152-01 11 112085561 112085561 A G BCO2 Missense_Mutation p.Y470C 0.31 deleterious(0) probably_damaging(1) TCGA-78-7152-01 11 117094859 117094859 C G PCSK7 Missense_Mutation p.G330A 0.26 deleterious(0) probably_damaging(1) TCGA-78-7152-01 11 118516195 118516195 G T PHLDB1 Silent p.S1081S 0.18 TCGA-78-7152-01 11 15197396 15197396 G A INSC Missense_Mutation p.E103K 0.07 tolerated(0.22) benign(0.046) TCGA-78-7152-01 11 18956449 18956449 G T MRGPRX1 5'UTR 0.30 TCGA-78-7152-01 11 20949951 20949951 C A NELL1 Missense_Mutation p.S308Y 0.20 tolerated(0.23) benign(0.195) TCGA-78-7152-01 11 4389047 4389047 G T OR52B4 Missense_Mutation p.P160H 0.24 deleterious(0) probably_damaging(0.998) TCGA-78-7152-01 11 47788812 47788812 C T FNBP4 Missense_Mutation p.G10D 0.45 deleterious(0) probably_damaging(0.931) TCGA-78-7152-01 11 48347185 48347185 C A OR4C3 Silent p.I231I 0.16 TCGA-78-7152-01 11 55033101 55033101 C A TRIM48 Missense_Mutation p.S162Y 0.08 tolerated(0.06) benign(0.187) TCGA-78-7152-01 11 55419086 55419086 C A OR4S2 Missense_Mutation p.S236Y 0.26 deleterious(0.04) benign(0.269) TCGA-78-7152-01 11 55761773 55761773 G T OR5F1 Missense_Mutation p.T110N 0.38 deleterious(0.01) benign(0.089) TCGA-78-7152-01 11 56113845 56113845 G C OR8K1 Missense_Mutation p.E111Q 0.09 deleterious_low_confidence(0.04) benign(0.217) TCGA-78-7152-01 11 57798701 57798701 G T OR6Q1 Missense_Mutation p.G93C 0.30 deleterious(0.03) possibly_damaging(0.87) TCGA-78-7152-01 11 6008152 6008152 C T OR52L1 Silent p.L3L 0.19 TCGA-78-7152-01 11 62649362 62649362 C A SLC3A2 Intron 0.19 TCGA-78-7152-01 11 66322659 66322659 G A CTD-3074O7.2 3'Flank 0.33 TCGA-78-7152-01 11 78381203 78381203 G A TENM4 Silent p.L2063L 0.20 TCGA-78-7152-01 11 9850975 9850975 C A SBF2 Missense_Mutation p.A1241S 0.22 tolerated(1) benign(0.009) TCGA-78-7152-01 12 106772115 106772115 C G POLR3B Missense_Mutation p.I189M 0.11 tolerated(0.17) possibly_damaging(0.513) TCGA-78-7152-01 12 128899644 128899644 C T TMEM132C Silent p.F151F 0.47 TCGA-78-7152-01 12 130648151 130648151 G C FZD10 Missense_Mutation p.E222Q 0.22 tolerated(0.46) benign(0.005) TCGA-78-7152-01 12 13769541 13769541 G T GRIN2B Silent p.P392P 0.20 TCGA-78-7152-01 12 14577906 14577906 G A ATF7IP Missense_Mutation p.E353K 0.19 tolerated_low_confidence(0.06) possibly_damaging(0.486) TCGA-78-7152-01 12 2705059 2705059 C A CACNA1C Missense_Mutation p.R895S 0.25 deleterious(0.03) benign(0.156) TCGA-78-7152-01 12 49233875 49233875 C A DDX23 Missense_Mutation p.R112L 0.25 deleterious_low_confidence(0.01) unknown(0) TCGA-78-7152-01 12 49433571 49433571 A T KMT2D Missense_Mutation p.L2661H 0.15 probably_damaging(0.994) TCGA-78-7152-01 12 53073746 53073746 A G KRT1 Silent p.F129F 0.25 TCGA-78-7152-01 12 54963037 54963037 C T PDE1B Silent p.D99D 0.19 TCGA-78-7152-01 12 56848280 56848280 G T MIP Missense_Mutation p.H40N 0.25 tolerated(0.37) benign(0.004) TCGA-78-7152-01 12 57569388 57569388 C G LRP1 Silent p.L1231L 0.08 TCGA-78-7152-01 12 6697099 6697099 T C CHD4 Missense_Mutation p.H1161R 0.29 deleterious(0) benign(0.001) TCGA-78-7152-01 12 67703981 67703981 G C CAND1 Missense_Mutation p.R1082T 0.04 deleterious(0) probably_damaging(0.999) TCGA-78-7152-01 12 69233632 69233632 G C MDM2 3'UTR 0.21 TCGA-78-7152-01 12 69987387 69987387 G A CCT2 Missense_Mutation p.V326I 0.19 deleterious(0.01) possibly_damaging(0.748) TCGA-78-7152-01 12 86373772 86373772 T A MGAT4C Silent p.L244L 0.30 TCGA-78-7152-01 12 88912534 88912534 T - KITLG Frame_Shift_Del p.I101Mfs*5 0.23 TCGA-78-7152-01 12 91502497 91502497 T A LUM Missense_Mutation p.E87V 0.18 tolerated(0.11) benign(0.038) TCGA-78-7152-01 13 109365050 109365050 G T MYO16 Missense_Mutation p.V90F 0.25 deleterious(0) possibly_damaging(0.693) TCGA-78-7152-01 13 109550455 109550455 G A MYO16 Missense_Mutation p.C562Y 0.24 deleterious(0) probably_damaging(0.992) TCGA-78-7152-01 13 99508166 99508166 T C DOCK9 Missense_Mutation p.N1273D 0.34 tolerated(0.81) benign(0.087) TCGA-78-7152-01 14 101005469 101005469 G T BEGAIN Missense_Mutation p.L207M 0.17 tolerated(0.11) possibly_damaging(0.861) TCGA-78-7152-01 14 101510583 101510583 G T MIR1185-2 RNA 0.20 TCGA-78-7152-01 14 107034903 107034903 C A IGHV5-51 Missense_Mutation p.M59I 0.34 tolerated(0.07) benign(0.005) TCGA-78-7152-01 14 107083432 107083432 G T IGHV4-59 Missense_Mutation p.Q58K 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.896) TCGA-78-7152-01 14 23421791 23421791 C T HAUS4 Missense_Mutation p.E53K 0.11 tolerated(0.48) possibly_damaging(0.7) TCGA-78-7152-01 14 23586998 23586998 G T CEBPE Missense_Mutation p.P182T 0.23 tolerated(0.62) benign(0.001) TCGA-78-7152-01 14 23894032 23894032 C G MYH7 Missense_Mutation p.E875D 0.12 deleterious(0.03) possibly_damaging(0.856) TCGA-78-7152-01 14 31380333 31380333 C G STRN3 Missense_Mutation p.G545A 0.07 deleterious(0) possibly_damaging(0.742) TCGA-78-7152-01 14 39722410 39722410 T A MIA2 Nonsense_Mutation p.L641* 0.31 TCGA-78-7152-01 14 42360955 42360955 C A LRFN5 Missense_Mutation p.P630T 0.27 tolerated_low_confidence(0.21) benign(0.005) TCGA-78-7152-01 14 51223726 51223726 T A NIN Missense_Mutation p.Q1341L 0.40 tolerated(0.32) benign(0) TCGA-78-7152-01 14 64416616 64416616 C T SYNE2 Missense_Mutation p.S161L 0.21 benign(0.012) TCGA-78-7152-01 14 68264845 68264845 T A ZFYVE26 Missense_Mutation p.S712C 0.27 tolerated(0.15) benign(0) TCGA-78-7152-01 14 70242951 70242951 G A SLC10A1 3'UTR 0.16 TCGA-78-7152-01 14 81964292 81964292 C T SEL1L Missense_Mutation p.E358K 0.07 tolerated(0.23) possibly_damaging(0.579) TCGA-78-7152-01 14 94697044 94697044 C G PPP4R4 Missense_Mutation p.L139V 0.23 deleterious(0) probably_damaging(0.957) TCGA-78-7152-01 15 33022958 33022958 G A GREM1 Missense_Mutation p.E23K 0.19 tolerated(0.08) possibly_damaging(0.899) TCGA-78-7152-01 15 48060883 48060883 T C SEMA6D Missense_Mutation p.F624S 0.32 tolerated(0.4) benign(0.038) TCGA-78-7152-01 15 78461483 78461483 A T IDH3A 3'UTR 0.35 TCGA-78-7152-01 15 81627180 81627180 C G TMC3 Missense_Mutation p.K780N 0.03 tolerated(0.11) benign(0.013) TCGA-78-7152-01 15 82532884 82532884 G C EFTUD1 Missense_Mutation p.L131V 0.10 deleterious(0) probably_damaging(0.995) TCGA-78-7152-01 16 139797 139797 C G NPRL3 Missense_Mutation p.R422P 0.18 tolerated(0.27) benign(0.065) TCGA-78-7152-01 16 1877419 1877419 G A FAHD1 Silent p.A63A 0.05 TCGA-78-7152-01 16 28917071 28917071 C A RABEP2 Missense_Mutation p.C482F 0.40 deleterious(0.01) benign(0.361) TCGA-78-7152-01 16 30376327 30376327 C T TBC1D10B Missense_Mutation p.E389K 0.10 tolerated(0.07) benign(0.137) TCGA-78-7152-01 16 34712204 34712204 C T RP11-80F22.9 RNA 0.10 TCGA-78-7152-01 16 49672436 49672436 G C ZNF423 Silent p.L209L 0.20 TCGA-78-7152-01 16 68862085 68862085 C T CDH1 Silent p.L725L 0.09 TCGA-78-7152-01 16 90141396 90141396 G T PRDM7 Silent p.R77R 0.33 TCGA-78-7152-01 17 10307870 10307870 C A MYH8 Missense_Mutation p.R822L 0.26 deleterious(0.01) possibly_damaging(0.748) TCGA-78-7152-01 17 10355805 10355805 G T MYH4 Missense_Mutation p.S1092R 0.26 deleterious(0.01) benign(0.367) TCGA-78-7152-01 17 10408226 10408226 T - MYH1 Frame_Shift_Del p.E865Kfs*20 0.26 TCGA-78-7152-01 17 19289684 19289684 G A MFAP4 Missense_Mutation p.S84L 0.12 tolerated(0.27) benign(0.009) TCGA-78-7152-01 17 26604103 26604103 G C AC061975.8 5'Flank 0.08 TCGA-78-7152-01 17 27047846 27047846 G A RPL23A Silent p.P49P 0.12 TCGA-78-7152-01 17 28539761 28539761 C T SLC6A4 Missense_Mutation p.A401T 0.05 tolerated(0.61) benign(0.013) TCGA-78-7152-01 17 38140573 38140573 G A PSMD3 Missense_Mutation p.E83K 0.06 deleterious(0) probably_damaging(0.945) TCGA-78-7152-01 17 3935493 3935493 C G ZZEF1 Silent p.V2273V 0.04 TCGA-78-7152-01 17 41020748 41020748 G C AOC4P RNA 0.25 TCGA-78-7152-01 17 5009283 5009283 C G ZNF232 Missense_Mutation p.E391Q 0.30 deleterious(0) benign(0.284) TCGA-78-7152-01 17 53798254 53798254 A G TMEM100 Missense_Mutation p.F60L 0.22 deleterious(0.03) probably_damaging(0.979) TCGA-78-7152-01 17 65988130 65988130 G T C17orf58 Missense_Mutation p.P65T 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-78-7152-01 17 8738629 8738629 C A PIK3R6 Silent p.G202G 0.25 TCGA-78-7152-01 18 12329794 12329794 A G TUBB6 3'Flank 0.11 TCGA-78-7152-01 18 22806582 22806582 C A ZNF521 Nonsense_Mutation p.E434* 0.24 TCGA-78-7152-01 18 25543371 25543371 C A CDH2 Missense_Mutation p.V822F 0.12 tolerated(0.73) possibly_damaging(0.548) TCGA-78-7152-01 18 28916510 28916510 C T DSG1 Missense_Mutation p.S400L 0.16 tolerated(0.79) benign(0.001) TCGA-78-7152-01 18 40854133 40854133 C T SYT4 Silent p.V87V 0.25 TCGA-78-7152-01 18 60795972 60795972 G A BCL2 Silent p.Y202Y 0.36 TCGA-78-7152-01 18 74639027 74639027 G T ZNF236 Silent p.G1352G 0.26 TCGA-78-7152-01 19 1206999 1207000 - G STK11 Frame_Shift_Ins p.D30Gfs*133 0.33 TCGA-78-7152-01 19 13423508 13423508 G A CACNA1A Missense_Mutation p.S548F 0.06 probably_damaging(0.919) TCGA-78-7152-01 19 15510160 15510160 C G AKAP8L Missense_Mutation p.K370N 0.06 deleterious(0.01) probably_damaging(0.95) TCGA-78-7152-01 19 16798999 16798999 C T TMEM38A Silent p.A239A 0.20 TCGA-78-7152-01 19 31770648 31770648 G A TSHZ3 Silent p.S17S 0.27 TCGA-78-7152-01 19 33370214 33370214 G A CEP89 Missense_Mutation p.L736F 0.10 deleterious(0) probably_damaging(0.982) TCGA-78-7152-01 19 3730104 3730104 G C TJP3 Missense_Mutation p.K88N 0.21 deleterious(0) possibly_damaging(0.894) TCGA-78-7152-01 19 38134173 38134173 C T ZFP30 Nonsense_Mutation p.W76* 0.14 TCGA-78-7152-01 19 38939051 38939051 C A RYR1 Missense_Mutation p.T286N 0.29 probably_damaging(0.992) TCGA-78-7152-01 19 42222239 42222239 G T CEACAM5 Missense_Mutation p.C477F 0.18 deleterious(0.04) probably_damaging(1) TCGA-78-7152-01 19 45911398 45911398 G A CD3EAP Missense_Mutation p.G58R 0.26 deleterious(0) probably_damaging(1) TCGA-78-7152-01 19 50027842 50027842 A G FCGRT Missense_Mutation p.Y227C 0.22 deleterious(0) probably_damaging(0.996) TCGA-78-7152-01 19 51499449 51499449 C A KLK8 Missense_Mutation p.V262L 0.27 deleterious(0.01) benign(0.171) TCGA-78-7152-01 19 53884844 53884844 C T ZNF525 Nonsense_Mutation p.Q338* 0.06 TCGA-78-7152-01 19 55526339 55526339 C A GP6 Missense_Mutation p.G325V 0.28 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-78-7152-01 19 58101402 58101402 G A ZIK1 Missense_Mutation p.E75K 0.16 tolerated(0.16) benign(0.001) TCGA-78-7152-01 19 9020110 9020110 T C MUC16 Missense_Mutation p.H12462R 0.26 benign(0.172) TCGA-78-7152-01 19 9061355 9061355 A T MUC16 Silent p.T8697T 0.27 TCGA-78-7152-01 19 9069180 9069180 G C MUC16 Nonsense_Mutation p.S6089* 0.07 TCGA-78-7152-01 1 109607110 109607110 C A TAF13 3'UTR 0.28 TCGA-78-7152-01 1 110562203 110562203 G A AHCYL1 Missense_Mutation p.E474K 0.24 tolerated(0.13) benign(0.042) TCGA-78-7152-01 1 110921598 110921598 T C SLC16A4 Missense_Mutation p.I303V 0.23 tolerated(0.13) possibly_damaging(0.646) TCGA-78-7152-01 1 113217337 113217337 G A MOV10 5'UTR 0.27 TCGA-78-7152-01 1 1412652 1412652 A T ATAD3B Splice_Site p.X69_splice 0.53 TCGA-78-7152-01 1 154543767 154543767 G C CHRNB2 Missense_Mutation p.K156N 0.09 deleterious(0.04) probably_damaging(0.925) TCGA-78-7152-01 1 158615379 158615379 A C SPTA1 Missense_Mutation p.L1301R 0.17 deleterious(0) probably_damaging(0.995) TCGA-78-7152-01 1 164769122 164769122 G T PBX1 Missense_Mutation p.A233S 0.24 deleterious(0) possibly_damaging(0.701) TCGA-78-7152-01 1 173569349 173569349 C T SLC9C2 Silent p.L45L 0.20 TCGA-78-7152-01 1 174244980 174244980 G A RABGAP1L Missense_Mutation p.G355R 0.06 deleterious(0.01) possibly_damaging(0.692) TCGA-78-7152-01 1 174244981 174244981 G A RABGAP1L Missense_Mutation p.G355E 0.06 tolerated(0.05) benign(0.329) TCGA-78-7152-01 1 177133755 177133755 G A ASTN1 Silent p.L20L 0.20 TCGA-78-7152-01 1 178514863 178514863 G A C1ORF220 Silent p.Q83Q 0.17 TCGA-78-7152-01 1 180003104 180003104 C G CEP350 Missense_Mutation p.S1278C 0.07 possibly_damaging(0.469) TCGA-78-7152-01 1 201047120 201047120 G A CACNA1S Silent p.F502F 0.18 TCGA-78-7152-01 1 23693616 23693616 C T ZNF436 Missense_Mutation p.E27K 0.19 tolerated(0.34) possibly_damaging(0.621) TCGA-78-7152-01 1 247719752 247719752 G T GCSAML Missense_Mutation p.D25Y 0.25 tolerated_low_confidence(0.1) probably_damaging(0.979) TCGA-78-7152-01 1 248309181 248309181 C A OR2M5 Missense_Mutation p.H244Q 0.24 deleterious(0.02) possibly_damaging(0.817) TCGA-78-7152-01 1 27687484 27687484 G C MAP3K6 Missense_Mutation p.I616M 0.45 deleterious(0) possibly_damaging(0.459) TCGA-78-7152-01 1 47028476 47028476 C A MKNK1 Missense_Mutation p.V270F 0.31 deleterious(0.01) probably_damaging(0.961) TCGA-78-7152-01 1 47264795 47264796 - CT CYP4B1 Frame_Shift_Ins p.W16Cfs*6 0.19 TCGA-78-7152-01 1 67154913 67154913 A T SGIP1 Silent p.P466P 0.24 TCGA-78-7152-01 1 70488908 70488908 G T LRRC7 Missense_Mutation p.D511Y 0.32 deleterious_low_confidence(0.01) benign(0.054) TCGA-78-7152-01 1 84662323 84662323 A T PRKACB Silent p.A195A 0.25 TCGA-78-7152-01 1 9811565 9811565 G A CLSTN1 Silent p.I205I 0.07 TCGA-78-7152-01 20 25057043 25057043 C G VSX1 Missense_Mutation p.E318Q 0.09 tolerated(0.11) benign(0.189) TCGA-78-7152-01 20 3209242 3209242 G A SLC4A11 Silent p.L811L 0.04 TCGA-78-7152-01 20 33584527 33584527 C G MYH7B Missense_Mutation p.Q1120E 0.06 benign(0.047) TCGA-78-7152-01 20 36997691 36997691 C G LBP Missense_Mutation p.S345C 0.31 deleterious(0) probably_damaging(0.987) TCGA-78-7152-01 20 39977393 39977393 G A LPIN3 Silent p.R141R 0.12 TCGA-78-7152-01 20 49551623 49551623 C T DPM1 3'UTR 0.37 TCGA-78-7152-01 20 49551632 49551632 C T DPM1 3'UTR 0.37 TCGA-78-7152-01 20 62044851 62044851 G A KCNQ2 Missense_Mutation p.S572L 0.05 deleterious(0) probably_damaging(1) TCGA-78-7152-01 20 62571317 62571317 C T UCKL1 3'UTR 0.10 TCGA-78-7152-01 21 31964847 31964847 G A KRTAP6-3 Missense_Mutation p.G21E 0.13 unknown(0) TCGA-78-7152-01 21 34925451 34925451 T C SON Missense_Mutation p.M1305T 0.26 benign(0) TCGA-78-7152-01 22 18566424 18566424 C T PEX26 Missense_Mutation p.A198V 0.18 tolerated(0.39) benign(0.084) TCGA-78-7152-01 22 21075604 21075604 C T PI4KA Missense_Mutation p.E1700K 0.04 deleterious(0.01) probably_damaging(0.988) TCGA-78-7152-01 2 133540014 133540014 G T NCKAP5 Missense_Mutation p.T1457N 0.22 tolerated(0.07) probably_damaging(0.999) TCGA-78-7152-01 2 153575479 153575479 C T ARL6IP6 Missense_Mutation p.S114L 0.29 deleterious(0.01) possibly_damaging(0.689) TCGA-78-7152-01 2 18764221 18764221 C G NT5C1B Missense_Mutation p.D372H 0.23 deleterious(0.04) benign(0.049) TCGA-78-7152-01 2 196729356 196729356 C A DNAH7 Silent p.G2341G 0.28 TCGA-78-7152-01 2 20455932 20455932 C T PUM2 Splice_Site p.X829_splice 0.20 TCGA-78-7152-01 2 217347624 217347624 C T SMARCAL1 Missense_Mutation p.S930L 0.04 tolerated(0.16) benign(0.003) TCGA-78-7152-01 2 220090255 220090255 G A ATG9A Silent p.V84V 0.24 TCGA-78-7152-01 2 242814574 242814574 C T CXXC11 Silent p.L289L 0.11 TCGA-78-7152-01 2 27997375 27997375 T A MRPL33 Silent p.T42T 0.22 TCGA-78-7152-01 2 32639999 32639999 C T BIRC6 Missense_Mutation p.S547F 0.15 benign(0.013) TCGA-78-7152-01 2 36691736 36691736 G A CRIM1 Missense_Mutation p.R310H 0.19 tolerated(0.35) probably_damaging(0.984) TCGA-78-7152-01 2 39281778 39281778 T A SOS1 Missense_Mutation p.N233Y 0.46 tolerated(1) possibly_damaging(0.621) TCGA-78-7152-01 2 44553939 44553939 G T PREPL Missense_Mutation p.T553K 0.34 deleterious(0) probably_damaging(0.992) TCGA-78-7152-01 2 46237565 46237565 A T PRKCE Missense_Mutation p.D449V 0.23 deleterious(0) probably_damaging(0.999) TCGA-78-7152-01 2 54080406 54080406 G A GPR75 Silent p.S496S 0.24 TCGA-78-7152-01 2 54080407 54080407 C A GPR75 Missense_Mutation p.S496I 0.24 tolerated_low_confidence(0.1) benign(0) TCGA-78-7152-01 2 54114489 54114489 C T PSME4 Missense_Mutation p.D1546N 0.12 tolerated(0.38) benign(0.004) TCGA-78-7152-01 2 80620354 80620354 G T CTNNA2 Nonsense_Mutation p.G359* 0.22 TCGA-78-7152-01 2 86254448 86254448 C G POLR1A 3'UTR 0.26 TCGA-78-7152-01 2 89265828 89265828 G T IGKV1-6 Missense_Mutation p.P102T 0.30 deleterious(0.04) benign(0.102) TCGA-78-7152-01 2 89339943 89339943 G T IGKV1-12 Silent p.I43I 0.16 TCGA-78-7152-01 3 10005688 10005688 C G EMC3 3'UTR 0.05 TCGA-78-7152-01 3 107798948 107798948 G A CD47 Missense_Mutation p.S97F 0.08 deleterious(0) probably_damaging(0.982) TCGA-78-7152-01 3 113850152 113850152 T A DRD3 Silent p.G273G 0.23 TCGA-78-7152-01 3 12209961 12209961 A - SYN2 RNA 0.10 TCGA-78-7152-01 3 134089682 134089683 - A AMOTL2 Frame_Shift_Ins p.A201Cfs*2 0.28 TCGA-78-7152-01 3 196094967 196094967 C G UBXN7 Missense_Mutation p.G256R 0.18 tolerated(0.24) benign(0.167) TCGA-78-7152-01 3 32804441 32804441 G A CNOT10 Intron 0.32 TCGA-78-7152-01 3 38315780 38315780 T - SLC22A13 Frame_Shift_Del p.R133Gfs*4 0.20 TCGA-78-7152-01 3 49060179 49060179 C T NDUFAF3 Silent p.F105F 0.09 TCGA-78-7152-01 3 50137930 50137930 C T RBM5 Intron 0.27 TCGA-78-7152-01 3 51418609 51418609 C T DOCK3 Silent p.S1904S 0.22 TCGA-78-7152-01 4 106600617 106600617 C T ARHGEF38 3'UTR 0.16 TCGA-78-7152-01 4 143007365 143007365 C A INPP4B Nonsense_Mutation p.E807* 0.19 TCGA-78-7152-01 4 156680962 156680962 G T GUCY1B3 Silent p.L9L 0.21 TCGA-78-7152-01 4 172735730 172735730 C A GALNTL6 5'UTR 0.39 TCGA-78-7152-01 4 26741526 26741526 G A TBC1D19 Silent p.L386L 0.24 TCGA-78-7152-01 4 48996650 48996650 A G CWH43 Missense_Mutation p.K176E 0.35 tolerated(0.36) benign(0.001) TCGA-78-7152-01 4 62598706 62598706 G T LPHN3 Missense_Mutation p.G210V 0.16 deleterious(0) probably_damaging(1) TCGA-78-7152-01 4 65165722 65165722 C A TECRL Missense_Mutation p.R248S 0.32 tolerated(0.49) benign(0.446) TCGA-78-7152-01 4 8398816 8398816 C A ACOX3 Missense_Mutation p.G302W 0.32 deleterious(0) probably_damaging(0.997) TCGA-78-7152-01 4 88766956 88766956 T C MEPE Silent p.N312N 0.34 TCGA-78-7152-01 4 96035971 96035971 C T BMPR1B Missense_Mutation p.R112W 0.21 deleterious(0.02) possibly_damaging(0.849) TCGA-78-7152-01 5 126770413 126770413 C A MEGF10 Missense_Mutation p.S625R 0.17 tolerated(0.06) probably_damaging(0.999) TCGA-78-7152-01 5 127503468 127503468 C T SLC12A2 Missense_Mutation p.R878C 0.12 deleterious(0) possibly_damaging(0.832) TCGA-78-7152-01 5 141248806 141248806 G A PCDH1 Silent p.L77L 0.20 TCGA-78-7152-01 5 150885619 150885619 G T FAT2 Missense_Mutation p.S4186Y 0.26 benign(0.149) TCGA-78-7152-01 5 156672899 156672899 T A ITK Missense_Mutation p.L508Q 0.33 deleterious(0) probably_damaging(0.998) TCGA-78-7152-01 5 167673932 167673932 C T TENM2 Silent p.V1996V 0.04 TCGA-78-7152-01 5 167855100 167855100 G A WWC1 Missense_Mutation p.E625K 0.26 deleterious(0.01) probably_damaging(0.991) TCGA-78-7152-01 5 180660418 180660418 C T TRIM41 Silent p.I382I 0.11 TCGA-78-7152-01 5 33984749 33984749 T C SLC45A2 5'UTR 0.35 TCGA-78-7152-01 5 37063937 37063937 G A NIPBL Missense_Mutation p.E2636K 0.28 deleterious(0.01) benign(0.146) TCGA-78-7152-01 5 56219601 56219601 G A MIER3 Missense_Mutation p.S370L 0.17 tolerated(0.22) benign(0.394) TCGA-78-7152-01 5 79817926 79817926 C G FAM151B Missense_Mutation p.Q214E 0.05 tolerated(0.3) benign(0.06) TCGA-78-7152-01 5 90015943 90015943 G T GPR98 Nonsense_Mutation p.G3176* 0.05 TCGA-78-7152-01 6 108843517 108843517 C G LACE1 Silent p.L445L 0.05 TCGA-78-7152-01 6 109787446 109787446 C A ZBTB24 Missense_Mutation p.G568C 0.29 deleterious(0.01) probably_damaging(0.941) TCGA-78-7152-01 6 110301347 110301347 C T GPR6 Silent p.L344L 0.21 TCGA-78-7152-01 6 126210672 126210673 - T NCOA7 Frame_Shift_Ins p.I492Yfs*24 0.25 TCGA-78-7152-01 6 132966648 132966648 G A TAAR1 Silent p.F165F 0.12 TCGA-78-7152-01 6 133045781 133045781 A G VNN3 3'UTR 0.23 TCGA-78-7152-01 6 152668295 152668295 G T SYNE1 Missense_Mutation p.Q3993K 0.26 benign(0.055) TCGA-78-7152-01 6 167728877 167728877 C G UNC93A Missense_Mutation p.I437M 0.17 tolerated(0.12) benign(0.001) TCGA-78-7152-01 6 26043780 26043780 C T HIST1H2BB Missense_Mutation p.E36K 0.20 deleterious_low_confidence(0.01) benign(0.017) TCGA-78-7152-01 6 28268747 28268747 G C PGBD1 Missense_Mutation p.E372D 0.11 tolerated(0.18) benign(0.011) TCGA-78-7152-01 6 31627555 31627555 T G C6orf47 Missense_Mutation p.K57T 0.17 deleterious_low_confidence(0) possibly_damaging(0.747) TCGA-78-7152-01 6 33373211 33373211 G C KIFC1 Missense_Mutation p.E447Q 0.09 tolerated(0.07) possibly_damaging(0.457) TCGA-78-7152-01 6 33374114 33374114 C T KIFC1 Missense_Mutation p.P560S 0.25 tolerated(0.09) benign(0.014) TCGA-78-7152-01 6 34741263 34741263 G T SNRPC Missense_Mutation p.M132I 0.09 deleterious(0.02) unknown(0) TCGA-78-7152-01 6 3851079 3851079 C A FAM50B 3'UTR 0.33 TCGA-78-7152-01 6 54805720 54805720 C G FAM83B Missense_Mutation p.L651V 0.14 tolerated(0.29) benign(0.007) TCGA-78-7152-01 7 107342395 107342395 G C SLC26A4 Missense_Mutation p.E643Q 0.10 tolerated(0.09) possibly_damaging(0.882) TCGA-78-7152-01 7 122635339 122635339 C T TAS2R16 Nonsense_Mutation p.W117* 0.17 TCGA-78-7152-01 7 140043315 140043315 G A SLC37A3 Missense_Mutation p.A408V 0.30 tolerated(0.08) probably_damaging(1) TCGA-78-7152-01 7 150730745 150730745 G T ABCB8 Missense_Mutation p.R50L 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.464) TCGA-78-7152-01 7 22766891 22766891 T G IL6 Missense_Mutation p.F4V 0.30 deleterious(0.04) benign(0) TCGA-78-7152-01 7 36713594 36713594 T C AOAH Missense_Mutation p.T82A 0.26 tolerated(0.45) benign(0.02) TCGA-78-7152-01 7 45632476 45632476 G T ADCY1 Missense_Mutation p.R253L 0.40 deleterious(0) probably_damaging(0.965) TCGA-78-7152-01 7 53104099 53104099 C T POM121L12 Silent p.L245L 0.21 TCGA-78-7152-01 7 73280063 73280063 G C WBSCR28 Missense_Mutation p.E220Q 0.11 deleterious(0) possibly_damaging(0.859) TCGA-78-7152-01 7 87772416 87772417 - CA ADAM22 Frame_Shift_Ins p.C433Hfs*48 0.20 TCGA-78-7152-01 7 89976008 89976008 T A GTPBP10 5'UTR 0.24 TCGA-78-7152-01 8 104066182 104066182 C T ATP6V1C1 Missense_Mutation p.L182F 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-78-7152-01 8 116426349 116426349 G T TRPS1 Missense_Mutation p.H1263N 0.36 deleterious_low_confidence(0) possibly_damaging(0.512) TCGA-78-7152-01 8 125132115 125132115 G A FER1L6 3'UTR 0.31 TCGA-78-7152-01 8 131955663 131955663 G T ADCY8 Silent p.T429T 0.10 TCGA-78-7152-01 8 144992837 144992837 C A PLEC Nonsense_Mutation p.E3855* 0.23 TCGA-78-7152-01 8 1497705 1497705 C T DLGAP2 Silent p.D282D 0.36 TCGA-78-7152-01 8 22147834 22147834 C T PIWIL2 Missense_Mutation p.R386W 0.12 deleterious(0) probably_damaging(0.978) TCGA-78-7152-01 8 30889608 30889608 C G PURG Missense_Mutation p.E231Q 0.05 deleterious(0.03) probably_damaging(0.999) TCGA-78-7152-01 8 82606523 82606523 C G SLC10A5 Missense_Mutation p.D229H 0.04 deleterious(0.03) possibly_damaging(0.601) TCGA-78-7152-01 8 92346585 92346585 G - SLC26A7 Frame_Shift_Del p.L235Ffs*2 0.18 TCGA-78-7152-01 9 101900314 101900314 C G TGFBR1 Missense_Mutation p.Q250E 0.21 deleterious(0) probably_damaging(0.931) TCGA-78-7152-01 9 123785720 123785720 G A C5 Missense_Mutation p.P360S 0.08 deleterious(0.03) benign(0.356) TCGA-78-7152-01 9 133951336 133951336 C T LAMC3 Missense_Mutation p.R1205W 0.09 deleterious(0.02) benign(0.009) TCGA-78-7152-01 9 134350175 134350175 G C PRRC2B Missense_Mutation p.E887Q 0.24 deleterious(0.03) benign(0.13) TCGA-78-7152-01 9 136344202 136344202 G A SLC2A6 5'UTR 0.15 TCGA-78-7152-01 9 136344207 136344207 G A SLC2A6 5'UTR 0.22 TCGA-78-7152-01 9 139652378 139652378 T G LCN8 Missense_Mutation p.E2A 0.39 tolerated(0.5) benign(0) TCGA-78-7152-01 9 32633780 32633780 G A TAF1L Missense_Mutation p.R600W 0.04 deleterious(0) possibly_damaging(0.893) TCGA-78-7152-01 9 35660375 35660375 G T ARHGEF39 3'UTR 0.15 TCGA-78-7152-01 9 43630649 43630649 G T SPATA31A6 Missense_Mutation p.A18D 0.26 deleterious(0.01) benign(0.154) TCGA-78-7152-01 9 72130977 72130977 C A APBA1 Missense_Mutation p.D384Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-78-7152-01 9 91994133 91994133 G A SEMA4D Missense_Mutation p.S692F 0.22 tolerated(0.14) benign(0) TCGA-78-7152-01 X 109695638 109695638 C G RGAG1 Nonsense_Mutation p.S598* 0.48 TCGA-78-7152-01 X 19022898 19022898 G C GPR64 Missense_Mutation p.L647V 0.06 deleterious(0.02) benign(0.311) TCGA-78-7152-01 X 21675838 21675838 G T KLHL34 Silent p.R23R 0.65 TCGA-78-7153-01 10 115534042 115534042 A C PLEKHS1 Silent p.P237P 0.09 TCGA-78-7153-01 10 116032545 116032545 A T VWA2 Nonsense_Mutation p.R140* 0.19 TCGA-78-7153-01 10 118236599 118236599 C T PNLIPRP3 Intron 0.33 TCGA-78-7153-01 10 120095846 120095846 A G FAM204A Missense_Mutation p.S28P 0.09 tolerated(0.29) benign(0.046) TCGA-78-7153-01 10 121685689 121685689 G T SEC23IP Missense_Mutation p.V755L 0.24 tolerated(0.05) benign(0.04) TCGA-78-7153-01 10 133106605 133106605 T A TCERG1L Missense_Mutation p.E180V 0.15 deleterious(0) probably_damaging(0.941) TCGA-78-7153-01 10 133107444 133107444 C A TCERG1L Missense_Mutation p.W154L 0.09 deleterious(0) probably_damaging(0.999) TCGA-78-7153-01 10 15760899 15760899 C G ITGA8 Splice_Site p.X70_splice 0.07 TCGA-78-7153-01 10 26462857 26462857 G C MYO3A Missense_Mutation p.E1222Q 0.16 deleterious_low_confidence(0.05) benign(0.02) TCGA-78-7153-01 10 30315685 30315685 C T KIAA1462 Missense_Mutation p.R1131H 0.09 tolerated(0.1) benign(0.004) TCGA-78-7153-01 10 5998369 5998369 G C IL15RA Missense_Mutation p.S222C 0.08 tolerated(0.19) possibly_damaging(0.799) TCGA-78-7153-01 11 118925328 118925328 G A HYOU1 Nonsense_Mutation p.R186* 0.11 TCGA-78-7153-01 11 119149277 119149288 ATCGTGGTAGAT - CBL In_Frame_Del p.I429_D432del 0.32 TCGA-78-7153-01 11 130784287 130784287 G - SNX19 Frame_Shift_Del p.F516Lfs*6 0.11 TCGA-78-7153-01 11 4470612 4470612 T C OR52K2 Silent p.L15L 0.13 TCGA-78-7153-01 11 4903745 4903745 C A OR51T1 Missense_Mutation p.L233I 0.28 tolerated(0.88) possibly_damaging(0.661) TCGA-78-7153-01 11 5068178 5068178 A T OR52J3 Missense_Mutation p.Q141H 0.19 deleterious(0.02) benign(0.005) TCGA-78-7153-01 11 55339872 55339872 T A OR4C16 Missense_Mutation p.I90N 0.40 deleterious(0) possibly_damaging(0.655) TCGA-78-7153-01 11 61205550 61205550 C G SDHAF2 Missense_Mutation p.P112R 0.43 deleterious(0) probably_damaging(0.988) TCGA-78-7153-01 11 61508674 61508674 C T DAGLA Missense_Mutation p.S675F 0.06 deleterious(0.02) benign(0.28) TCGA-78-7153-01 11 62393613 62393613 A G GANAB Silent p.F905F 0.06 TCGA-78-7153-01 11 72292496 72292496 G T PDE2A Nonsense_Mutation p.Y650* 0.44 TCGA-78-7153-01 12 109719362 109719362 G T FOXN4 Missense_Mutation p.P382T 0.30 deleterious(0) probably_damaging(0.979) TCGA-78-7153-01 12 120536884 120536884 C T RAB35 Missense_Mutation p.R101Q 0.10 tolerated(0.86) probably_damaging(0.968) TCGA-78-7153-01 12 133779003 133779003 T C ZNF268 Missense_Mutation p.I244T 0.42 tolerated(1) benign(0.002) TCGA-78-7153-01 12 3149687 3149687 G A TEAD4 3'UTR 0.29 TCGA-78-7153-01 12 92538035 92538041 AGGACAC - BTG1 Frame_Shift_Del p.V111Tfs*31 0.27 TCGA-78-7153-01 12 97102464 97102464 A G C12orf55 Missense_Mutation p.N2203D 0.15 deleterious(0.03) benign(0.001) TCGA-78-7153-01 13 39544447 39544447 C T STOML3 Missense_Mutation p.A131T 0.24 tolerated(0.47) probably_damaging(1) TCGA-78-7153-01 13 52035185 52035185 T G RPS4XP16 RNA 0.15 TCGA-78-7153-01 13 70413107 70413107 C G KLHL1 Splice_Site p.X472_splice 0.47 TCGA-78-7153-01 13 98043793 98043793 A G MBNL2 3'UTR 0.50 TCGA-78-7153-01 14 19378174 19378174 G T OR11H12 Missense_Mutation p.C194F 0.19 deleterious(0) probably_damaging(1) TCGA-78-7153-01 14 53325101 53325101 C A FERMT2 Missense_Mutation p.W686C 0.08 deleterious(0) probably_damaging(0.996) TCGA-78-7153-01 14 65008152 65008152 G A HSPA2 Silent p.E195E 0.08 TCGA-78-7153-01 14 68260457 68260457 C T ZFYVE26 Missense_Mutation p.M807I 0.08 tolerated(0.18) benign(0.002) TCGA-78-7153-01 15 37110022 37110022 G T CSNK1A1P1 RNA 0.14 TCGA-78-7153-01 15 41476627 41476627 C G EXD1 Missense_Mutation p.E349D 0.12 tolerated(0.53) benign(0.004) TCGA-78-7153-01 15 43627963 43627963 G T ADAL Missense_Mutation p.D45Y 0.16 tolerated(0.57) benign(0.008) TCGA-78-7153-01 15 78836557 78836557 A T PSMA4 Missense_Mutation p.I79L 0.19 tolerated(0.5) benign(0.136) TCGA-78-7153-01 16 17221526 17221526 G A XYLT1 Silent p.S740S 0.10 TCGA-78-7153-01 16 2549370 2549370 G A TBC1D24 Silent p.Q385Q 0.09 TCGA-78-7153-01 16 30740307 30740307 G T SRCAP Silent p.R1893R 0.20 TCGA-78-7153-01 16 56700750 56700750 G A MT1G 3'UTR 0.19 TCGA-78-7153-01 16 67290871 67290871 T C SLC9A5 Missense_Mutation p.I397T 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-78-7153-01 16 81960739 81960739 G A PLCG2 Missense_Mutation p.V824I 0.05 deleterious(0.01) probably_damaging(0.994) TCGA-78-7153-01 17 1675164 1675164 A C SERPINF1 Splice_Site p.X147_splice 0.12 TCGA-78-7153-01 17 33467047 33467047 A C NLE1 Silent p.A67A 0.26 TCGA-78-7153-01 17 41170197 41170197 G A VAT1 Silent p.L208L 0.10 TCGA-78-7153-01 17 45994184 45994184 G A SP2 Silent p.K249K 0.08 TCGA-78-7153-01 17 48627386 48627386 A G SPATA20 Silent p.R301R 0.08 TCGA-78-7153-01 17 51900728 51900728 G A KIF2B Missense_Mutation p.A112T 0.06 tolerated(0.2) benign(0.002) TCGA-78-7153-01 17 51900914 51900914 C T KIF2B Missense_Mutation p.R174C 0.04 deleterious(0) probably_damaging(0.977) TCGA-78-7153-01 17 5991404 5991404 C T WSCD1 Silent p.C174C 0.09 TCGA-78-7153-01 17 65688891 65688891 C T PITPNC1 Missense_Mutation p.R296W 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-78-7153-01 19 10610361 10610361 C T KEAP1 Missense_Mutation p.E117K 0.19 deleterious(0) probably_damaging(0.999) TCGA-78-7153-01 19 1095323 1095323 C T POLR2E 5'UTR 0.55 TCGA-78-7153-01 19 38774333 38774333 T C SPINT2 Missense_Mutation p.V58A 0.05 tolerated(0.55) benign(0.034) TCGA-78-7153-01 19 47503733 47503735 CAG - ARHGAP35 In_Frame_Del p.Q1431del 0.31 TCGA-78-7153-01 19 49379184 49379184 C T PPP1R15A Missense_Mutation p.S660F 0.08 tolerated(0.65) unknown(0) TCGA-78-7153-01 19 5700829 5700829 C T LONP1 Missense_Mutation p.G493S 0.06 deleterious(0) probably_damaging(1) TCGA-78-7153-01 19 7614968 7614968 T G PNPLA6 Missense_Mutation p.F604C 0.08 deleterious(0) possibly_damaging(0.882) TCGA-78-7153-01 1 111216654 111216654 G A KCNA3 Missense_Mutation p.R260C 0.06 deleterious(0) probably_damaging(0.953) TCGA-78-7153-01 1 119441710 119441710 C A TBX15 Missense_Mutation p.W216L 0.42 deleterious(0.04) probably_damaging(0.986) TCGA-78-7153-01 1 12408994 12408994 A G VPS13D Missense_Mutation p.M3062V 0.15 benign(0.005) TCGA-78-7153-01 1 12856112 12856112 G A PRAMEF1 Silent p.P464P 0.08 TCGA-78-7153-01 1 145530918 145530918 G T ITGA10 Missense_Mutation p.W217L 0.33 deleterious(0.01) possibly_damaging(0.876) TCGA-78-7153-01 1 148009459 148009459 A G NBPF14 Silent p.D622D 0.07 TCGA-78-7153-01 1 152278890 152278890 C A FLG Missense_Mutation p.R2824S 0.03 benign(0.064) TCGA-78-7153-01 1 169923240 169923240 C T KIFAP3 Missense_Mutation p.A729T 0.44 tolerated(0.61) benign(0.001) TCGA-78-7153-01 1 171621223 171621223 C A MYOC Missense_Mutation p.V177L 0.04 tolerated(0.21) benign(0.005) TCGA-78-7153-01 1 183907820 183907820 G C COLGALT2 3'UTR 0.33 TCGA-78-7153-01 1 26648746 26648746 G A AIM1L Silent p.A728A 0.18 TCGA-78-7153-01 1 36785751 36785751 C A SH3D21 Missense_Mutation p.S496Y 0.06 deleterious(0.01) possibly_damaging(0.852) TCGA-78-7153-01 1 75685020 75685020 C T SLC44A5 Silent p.A396A 0.25 TCGA-78-7153-01 1 99772332 99772332 G T LPPR4 Missense_Mutation p.K686N 0.28 tolerated(0.13) benign(0.006) TCGA-78-7153-01 20 1108107 1108107 C G PSMF1 Missense_Mutation p.N107K 0.29 tolerated(0.38) benign(0.168) TCGA-78-7153-01 20 3652284 3652284 G T ADAM33 Missense_Mutation p.L617M 0.40 tolerated(0.1) probably_damaging(0.995) TCGA-78-7153-01 20 46264276 46264276 A G NCOA3 Silent p.S441S 0.07 TCGA-78-7153-01 20 47836000 47836000 C G DDX27 Silent p.L36L 0.07 TCGA-78-7153-01 20 56993313 56993313 G A VAPB Silent p.P35P 0.03 TCGA-78-7153-01 20 60589671 60589671 G C TAF4 Missense_Mutation p.Q485E 0.10 possibly_damaging(0.68) TCGA-78-7153-01 20 62608328 62608328 G A SAMD10 Silent p.I147I 0.26 TCGA-78-7153-01 22 20861891 20861891 G T MED15 5'Flank 0.32 TCGA-78-7153-01 22 36915565 36915565 C T EIF3D Missense_Mutation p.E200K 0.14 tolerated(0.09) possibly_damaging(0.772) TCGA-78-7153-01 22 37692042 37692042 G A CYTH4 Missense_Mutation p.R57Q 0.14 tolerated(0.06) benign(0.037) TCGA-78-7153-01 22 38084913 38084913 G A NOL12 Missense_Mutation p.D99N 0.07 deleterious(0) probably_damaging(0.984) TCGA-78-7153-01 22 46345949 46345949 G A WNT7B Missense_Mutation p.A50V 0.13 tolerated(0.12) possibly_damaging(0.521) TCGA-78-7153-01 2 107041237 107041237 T A RGPD3 Silent p.S1062S 0.13 TCGA-78-7153-01 2 113342180 113342180 C A CHCHD5 5'UTR 0.14 TCGA-78-7153-01 2 120388402 120388402 C A PCDP1 Silent p.G633G 0.14 TCGA-78-7153-01 2 190428871 190428871 C G SLC40A1 Missense_Mutation p.E281Q 0.16 tolerated(0.46) benign(0.091) TCGA-78-7153-01 2 206166352 206166352 G A PARD3B Missense_Mutation p.E791K 0.14 tolerated(0.34) possibly_damaging(0.661) TCGA-78-7153-01 2 230456436 230456436 C G DNER Missense_Mutation p.A149P 0.10 tolerated_low_confidence(0.08) benign(0.02) TCGA-78-7153-01 2 26705336 26705336 T C OTOF Missense_Mutation p.N506S 0.18 tolerated(0.06) probably_damaging(0.999) TCGA-78-7153-01 3 108366847 108366847 A - DZIP3 Frame_Shift_Del p.E617Gfs*4 0.13 TCGA-78-7153-01 3 178921404 178921404 C G PIK3CA Missense_Mutation p.Q296E 0.10 tolerated(0.92) benign(0.013) TCGA-78-7153-01 3 41266100 41266100 T A CTNNB1 Missense_Mutation p.S33T 0.16 deleterious(0.02) possibly_damaging(0.607) TCGA-78-7153-01 3 41266101 41266101 C A CTNNB1 Missense_Mutation p.S33Y 0.16 deleterious(0) possibly_damaging(0.64) TCGA-78-7153-01 4 103226270 103226270 T A SLC39A8 Splice_Site p.X185_splice 0.12 TCGA-78-7153-01 4 155530817 155530817 C T FGG Missense_Mutation p.D211N 0.06 tolerated(0.12) possibly_damaging(0.89) TCGA-78-7153-01 4 4317644 4317644 T G ZBTB49 Missense_Mutation p.V523G 0.11 deleterious(0.01) possibly_damaging(0.472) TCGA-78-7153-01 4 91230645 91230645 G A CCSER1 Missense_Mutation p.A404T 0.26 tolerated(0.25) benign(0.007) TCGA-78-7153-01 5 112170861 112170861 A T APC Missense_Mutation p.R653W 0.19 probably_damaging(1) TCGA-78-7153-01 5 132648445 132648445 C G FSTL4 Missense_Mutation p.D210H 0.09 tolerated(0.08) benign(0.418) TCGA-78-7153-01 5 137230154 137230154 G A PKD2L2 Missense_Mutation p.G127E 0.16 deleterious(0) probably_damaging(1) TCGA-78-7153-01 5 140209180 140209180 C T PCDHA6 Missense_Mutation p.R502C 0.40 deleterious_low_confidence(0) benign(0.445) TCGA-78-7153-01 5 140682903 140682903 A C SLC25A2 Missense_Mutation p.L177R 0.04 deleterious(0.01) possibly_damaging(0.873) TCGA-78-7153-01 5 149215969 149215969 G T PPARGC1B Missense_Mutation p.A651S 0.07 tolerated(1) benign(0.003) TCGA-78-7153-01 5 150565642 150565642 G T CCDC69 Missense_Mutation p.A146D 0.05 tolerated(0.25) benign(0.049) TCGA-78-7153-01 5 16674979 16674979 G C MYO10 Silent p.L1649L 0.05 TCGA-78-7153-01 5 54624545 54624545 G C SKIV2L2 Missense_Mutation p.D141H 0.07 deleterious(0) probably_damaging(1) TCGA-78-7153-01 6 150267642 150267642 C T ULBP2 Missense_Mutation p.H162Y 0.16 deleterious(0) possibly_damaging(0.521) TCGA-78-7153-01 6 28500162 28500162 G T GPX5 Missense_Mutation p.G142C 0.09 deleterious(0) probably_damaging(1) TCGA-78-7153-01 6 29141320 29141320 T A OR2J2 5'UTR 0.25 TCGA-78-7153-01 6 30675945 30675945 C A MDC1 Missense_Mutation p.G804V 0.25 deleterious(0) probably_damaging(0.998) TCGA-78-7153-01 6 32168902 32168902 G A NOTCH4 Silent p.L1377L 0.08 TCGA-78-7153-01 6 33272909 33272909 T C TAPBP Missense_Mutation p.D242G 0.43 deleterious(0.02) probably_damaging(0.988) TCGA-78-7153-01 6 33423463 33423463 G C ZBTB9 Missense_Mutation p.V196L 0.09 tolerated(0.77) benign(0.013) TCGA-78-7153-01 6 43171224 43171224 C T CUL9 Missense_Mutation p.R1307W 0.36 deleterious(0.01) benign(0.008) TCGA-78-7153-01 7 103155858 103155858 A G RELN Silent p.A2631A 0.08 TCGA-78-7153-01 7 140396598 140396598 C T NDUFB2 Silent p.F18F 0.20 TCGA-78-7153-01 7 140481411 140481411 C G BRAF Missense_Mutation p.G466A 0.28 deleterious(0) possibly_damaging(0.635) TCGA-78-7153-01 7 142032338 142032338 G A TRBV7-1 Nonsense_Mutation p.W53* 0.33 TCGA-78-7153-01 7 142334619 142334619 T G TRBV20-1 Missense_Mutation p.L14R 0.33 deleterious(0.01) unknown(0) TCGA-78-7153-01 7 4167093 4167093 G A SDK1 Missense_Mutation p.E1302K 0.12 tolerated(0.19) benign(0.253) TCGA-78-7153-01 7 99987664 99987664 C T PILRA Missense_Mutation p.A203V 0.06 deleterious(0.03) probably_damaging(0.991) TCGA-78-7153-01 8 101733732 101733732 A G PABPC1 Missense_Mutation p.L27P 0.06 deleterious(0) probably_damaging(0.998) TCGA-78-7153-01 8 10466111 10466111 C T RP1L1 Missense_Mutation p.E1833K 0.07 unknown(0) TCGA-78-7153-01 8 124792255 124792255 G C FAM91A1 Missense_Mutation p.D194H 0.10 deleterious(0) probably_damaging(0.999) TCGA-78-7153-01 8 131226829 131226829 C T ASAP1 Silent p.K126K 0.08 TCGA-78-7153-01 8 139163899 139163899 G A FAM135B Missense_Mutation p.T940M 0.06 tolerated(0.12) benign(0.014) TCGA-78-7153-01 8 143740275 143740275 C G JRK RNA 0.04 TCGA-78-7153-01 8 144654722 144654722 C G MROH6 Missense_Mutation p.E55Q 0.08 deleterious_low_confidence(0.02) benign(0.346) TCGA-78-7153-01 8 28600645 28600645 C T EXTL3 Missense_Mutation p.R822W 0.15 deleterious(0) probably_damaging(1) TCGA-78-7153-01 8 37993278 37993278 C T ASH2L Silent p.S571S 0.25 TCGA-78-7153-01 8 61748804 61748804 C T CHD7 Silent p.R1317R 0.05 TCGA-78-7153-01 8 7340232 7340232 C T DEFB106B Missense_Mutation p.G31E 0.07 deleterious(0) probably_damaging(0.997) TCGA-78-7153-01 8 80831194 80831194 A C MRPS28 3'UTR 0.04 TCGA-78-7153-01 8 97978225 97978225 C T CPQ Silent p.G304G 0.09 TCGA-78-7153-01 9 103204575 103204575 C T MSANTD3 Missense_Mutation p.L119F 0.10 tolerated(0.1) benign(0.073) TCGA-78-7153-01 9 84267154 84267154 A T TLE1 Missense_Mutation p.M116K 0.31 deleterious(0) benign(0.41) TCGA-78-7153-01 X 100183383 100183383 G C XKRX 5'UTR 0.04 TCGA-78-7153-01 X 101805063 101805063 C A NXF4 RNA 0.07 TCGA-78-7153-01 X 109694853 109694853 A G RGAG1 Silent p.L336L 0.08 TCGA-78-7153-01 X 114357660 114357660 T C LRCH2 Missense_Mutation p.I649V 0.13 tolerated(0.55) probably_damaging(0.994) TCGA-78-7153-01 X 129271203 129271203 C A AIFM1 Intron 0.07 TCGA-78-7153-01 X 130408758 130408758 C T IGSF1 Missense_Mutation p.G1194D 0.07 tolerated(0.2) probably_damaging(1) TCGA-78-7153-01 X 135323326 135323326 G T MAP7D3 Missense_Mutation p.S176R 0.11 deleterious(0.01) benign(0.297) TCGA-78-7153-01 X 138699760 138699760 C T MCF2 Missense_Mutation p.R364H 0.38 deleterious(0.04) benign(0.052) TCGA-78-7153-01 X 147018985 147018985 G C FMR1 Missense_Mutation p.E331Q 0.05 tolerated(0.4) benign(0.057) TCGA-78-7153-01 X 25033786 25033786 C A ARX Missense_Mutation p.L23F 0.18 deleterious(0) unknown(0) TCGA-78-7153-01 X 2835948 2835948 A T ARSD Missense_Mutation p.W254R 0.16 deleterious(0) probably_damaging(0.981) TCGA-78-7153-01 X 30254547 30254547 A T MAGEB3 Missense_Mutation p.K169M 0.07 deleterious(0) probably_damaging(0.994) TCGA-78-7153-01 X 31496492 31496492 C T DMD Splice_Site p.X2890_splice 0.13 TCGA-78-7153-01 X 34149740 34149740 G A FAM47A Missense_Mutation p.P219L 0.18 tolerated(0.7) benign(0.002) TCGA-78-7153-01 X 46322632 46322632 G T KRBOX4 Splice_Site p.X48_splice 0.31 TCGA-78-7153-01 X 64721936 64721936 T C ZC3H12B Missense_Mutation p.I453T 0.10 tolerated(1) benign(0.05) TCGA-78-7153-01 X 70320855 70320855 C T FOXO4 Nonsense_Mutation p.R259* 0.20 TCGA-78-7153-01 X 7870079 7870079 T A PNPLA4 Missense_Mutation p.D194V 0.25 deleterious(0) possibly_damaging(0.891) TCGA-78-7153-01 X 86888891 86888891 T A KLHL4 Silent p.G564G 0.10 TCGA-78-7154-01 10 101960516 101960516 C A CHUK Nonsense_Mutation p.E531* 0.12 TCGA-78-7154-01 10 102546746 102546746 G C PAX2 Missense_Mutation p.L221F 0.45 tolerated(0.7) benign(0) TCGA-78-7154-01 10 11060046 11060046 C T CELF2 5'UTR 0.14 TCGA-78-7154-01 10 115895981 115895981 C T C10orf118 Missense_Mutation p.E451K 0.09 tolerated(0.11) possibly_damaging(0.624) TCGA-78-7154-01 10 14939122 14939122 G A SUV39H2 Missense_Mutation p.G152E 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-78-7154-01 10 16547037 16547037 A G PTER Silent p.K239K 0.25 TCGA-78-7154-01 10 22016856 22016856 C G MLLT10 Missense_Mutation p.R688G 0.32 tolerated(0.07) probably_damaging(0.909) TCGA-78-7154-01 10 37508673 37508673 G A ANKRD30A Missense_Mutation p.D1289N 0.14 tolerated(0.13) benign(0.001) TCGA-78-7154-01 10 46111945 46111945 C A ZFAND4 Missense_Mutation p.G708V 0.60 deleterious(0) probably_damaging(1) TCGA-78-7154-01 10 55566757 55566757 T C PCDH15 Missense_Mutation p.N1543S 0.19 tolerated_low_confidence(0.66) benign(0.014) TCGA-78-7154-01 10 61844939 61844939 G A ANK3 Missense_Mutation p.S1274F 0.81 probably_damaging(0.998) TCGA-78-7154-01 10 69959140 69959140 C T MYPN Missense_Mutation p.P1101S 0.32 tolerated(0.31) benign(0.043) TCGA-78-7154-01 10 73122032 73122032 C T SLC29A3 Silent p.L365L 0.18 TCGA-78-7154-01 10 8006790 8006790 C T TAF3 Silent p.S439S 0.20 TCGA-78-7154-01 10 96534866 96534866 A G CYP2C19 Missense_Mutation p.M74V 0.65 tolerated(0.73) benign(0.001) TCGA-78-7154-01 11 10555597 10555597 C G RNF141 Missense_Mutation p.E37Q 0.37 tolerated(0.07) benign(0.353) TCGA-78-7154-01 11 105774606 105774606 C A GRIA4 Missense_Mutation p.Q318K 0.08 tolerated(0.44) possibly_damaging(0.621) TCGA-78-7154-01 11 113075215 113075215 T C NCAM1 Missense_Mutation p.V171A 0.59 deleterious(0) probably_damaging(0.954) TCGA-78-7154-01 11 114569363 114569363 G A NXPE2 Silent p.Q243Q 0.27 TCGA-78-7154-01 11 121008503 121008503 C T TECTA Silent p.Y1105Y 0.14 TCGA-78-7154-01 11 121476152 121476152 G C SORL1 Missense_Mutation p.S1607T 0.12 tolerated(0.31) probably_damaging(0.983) TCGA-78-7154-01 11 130785388 130785388 C A SNX19 Missense_Mutation p.M149I 0.09 tolerated(0.12) benign(0.012) TCGA-78-7154-01 11 4388806 4388806 G C OR52B4 Silent p.L240L 0.29 TCGA-78-7154-01 11 47315475 47315475 G C MADD Missense_Mutation p.E1153Q 0.35 tolerated(0.15) benign(0.405) TCGA-78-7154-01 11 4825663 4825663 T A OR52R1 5'Flank 0.25 TCGA-78-7154-01 11 48267148 48267148 G A OR4X2 Missense_Mutation p.V165M 0.28 deleterious(0.01) probably_damaging(0.961) TCGA-78-7154-01 11 5364617 5364617 G A OR51B5 Silent p.L46L 0.39 TCGA-78-7154-01 11 5443687 5443687 T G OR51Q1 Missense_Mutation p.L86R 0.18 deleterious(0) possibly_damaging(0.897) TCGA-78-7154-01 11 55406751 55406751 G A OR4P4 Silent p.L306L 0.25 TCGA-78-7154-01 11 55418793 55418793 A T OR4S2 Silent p.T138T 0.62 TCGA-78-7154-01 11 56344765 56344765 C A OR5M10 Missense_Mutation p.V145F 0.64 deleterious(0) probably_damaging(0.939) TCGA-78-7154-01 11 59837144 59837144 G C MS4A3 Missense_Mutation p.R204T 0.57 tolerated(0.06) benign(0.147) TCGA-78-7154-01 11 6523987 6523987 C G DNHD1 Missense_Mutation p.Q251E 0.46 benign(0.114) TCGA-78-7154-01 11 71952288 71952288 C T PHOX2A Missense_Mutation p.R88H 0.33 deleterious(0) benign(0.202) TCGA-78-7154-01 11 76833722 76833722 C G CAPN5 Missense_Mutation p.F568L 0.74 deleterious(0.03) probably_damaging(0.999) TCGA-78-7154-01 11 82536054 82536054 T C PRCP Missense_Mutation p.K483R 0.29 tolerated(0.19) benign(0.004) TCGA-78-7154-01 12 101504206 101504206 T C ANO4 Missense_Mutation p.I690T 0.21 deleterious(0) probably_damaging(0.999) TCGA-78-7154-01 12 105380132 105380132 T C C12orf45 Translation_Start_Site p.M1? 0.36 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-78-7154-01 12 121001687 121001687 A T RNF10 Missense_Mutation p.R536W 0.30 deleterious(0.03) benign(0.199) TCGA-78-7154-01 12 129563160 129563160 G A TMEM132D Silent p.L678L 0.18 TCGA-78-7154-01 12 13102817 13102817 C T GPRC5D Missense_Mutation p.V168M 0.15 tolerated(0.12) benign(0.301) TCGA-78-7154-01 12 15699627 15699627 G A PTPRO Silent p.Q763Q 0.11 TCGA-78-7154-01 12 2907953 2907953 G A FKBP4 Missense_Mutation p.E159K 0.26 tolerated(0.11) benign(0.339) TCGA-78-7154-01 12 29446406 29446406 C G FAR2 Silent p.L121L 0.06 TCGA-78-7154-01 12 38714744 38714744 T C ALG10B Missense_Mutation p.I384T 0.42 deleterious(0.03) benign(0.297) TCGA-78-7154-01 12 45567729 45567729 A C PLEKHA8P1 RNA 0.11 TCGA-78-7154-01 12 48920124 48920124 C T OR8S1 Missense_Mutation p.A237V 0.19 deleterious(0.03) possibly_damaging(0.654) TCGA-78-7154-01 12 52946918 52946918 G T KRT71 5'UTR 0.19 TCGA-78-7154-01 12 53452199 53452199 C A TENC1 Missense_Mutation p.P409T 0.15 deleterious(0.04) benign(0.138) TCGA-78-7154-01 12 62783422 62783422 G A USP15 Missense_Mutation p.R532K 0.16 tolerated(1) benign(0.059) TCGA-78-7154-01 12 674430 674430 C A NINJ2 Missense_Mutation p.A180S 0.29 deleterious(0.01) benign(0.304) TCGA-78-7154-01 12 78593140 78593140 G T NAV3 Nonsense_Mutation p.E2160* 0.31 TCGA-78-7154-01 12 85638740 85638740 G A LRRIQ1 3'UTR 0.36 TCGA-78-7154-01 12 8995850 8995850 C T A2ML1 Missense_Mutation p.R457W 0.07 deleterious(0.03) benign(0.035) TCGA-78-7154-01 12 96691485 96691485 C G CDK17 Missense_Mutation p.D244H 0.27 deleterious(0.01) probably_damaging(0.931) TCGA-78-7154-01 13 31205581 31205581 C G USPL1 Missense_Mutation p.L280V 0.69 deleterious(0) possibly_damaging(0.819) TCGA-78-7154-01 13 42877626 42877626 C G AKAP11 Missense_Mutation p.L1582V 0.49 tolerated(0.13) probably_damaging(0.947) TCGA-78-7154-01 13 95050757 95050757 C A GPC6 Missense_Mutation p.Q443K 0.51 deleterious(0) probably_damaging(0.992) TCGA-78-7154-01 14 105911754 105911754 G C MTA1 Splice_Site p.X33_splice 0.27 TCGA-78-7154-01 14 20248685 20248685 C A OR4M1 Silent p.L68L 0.13 TCGA-78-7154-01 14 20482822 20482822 G A OR4K14 Silent p.S177S 0.29 TCGA-78-7154-01 14 22891846 22891846 A G TRDV2 Missense_Mutation p.Y53C 0.65 deleterious(0.05) probably_damaging(0.956) TCGA-78-7154-01 14 23530555 23530555 G T ACIN1 Missense_Mutation p.R1184S 0.16 probably_damaging(0.987) TCGA-78-7154-01 14 23549752 23549752 C G ACIN1 Missense_Mutation p.E322D 0.30 benign(0.32) TCGA-78-7154-01 14 23549790 23549790 C G ACIN1 Missense_Mutation p.E310Q 0.32 probably_damaging(0.99) TCGA-78-7154-01 14 59830421 59830421 C G DAAM1 Missense_Mutation p.S926C 0.50 deleterious(0) probably_damaging(0.976) TCGA-78-7154-01 14 72169178 72169178 C T SIPA1L1 Missense_Mutation p.T1201M 0.46 deleterious(0.01) possibly_damaging(0.877) TCGA-78-7154-01 14 94962778 94962778 C A SERPINA12 Missense_Mutation p.K279N 0.41 tolerated(0.07) benign(0.21) TCGA-78-7154-01 15 28517458 28517458 G C HERC2 Missense_Mutation p.S329C 0.17 possibly_damaging(0.846) TCGA-78-7154-01 15 39544847 39544847 G A C15orf54 Missense_Mutation p.E171K 0.35 deleterious_low_confidence(0.02) possibly_damaging(0.801) TCGA-78-7154-01 15 43020852 43020852 C T CDAN1 Silent p.R934R 0.29 TCGA-78-7154-01 15 65499247 65499247 C A CILP Missense_Mutation p.W99C 0.38 deleterious(0) probably_damaging(0.999) TCGA-78-7154-01 15 66782990 66782990 G A MAP2K1 3'UTR 0.16 TCGA-78-7154-01 15 73614946 73614946 G T HCN4 Missense_Mutation p.P1163H 0.48 tolerated_low_confidence(0.66) probably_damaging(0.996) TCGA-78-7154-01 15 74425518 74425518 C T ISLR2 Silent p.D141D 0.09 TCGA-78-7154-01 15 85411403 85411403 C T ALPK3 Nonsense_Mutation p.Q1814* 0.46 TCGA-78-7154-01 15 88423650 88423650 G A NTRK3 Missense_Mutation p.H729Y 0.07 deleterious(0) probably_damaging(0.99) TCGA-78-7154-01 15 90610367 90610367 G A ZNF710 5'UTR 0.22 TCGA-78-7154-01 15 91479540 91479540 C G UNC45A Silent p.V92V 0.37 TCGA-78-7154-01 16 20996669 20996669 T C DNAH3 Silent p.A2465A 0.68 TCGA-78-7154-01 16 21069459 21069459 G T DNAH3 Missense_Mutation p.S1291Y 0.14 tolerated(0.11) benign(0.27) TCGA-78-7154-01 16 28916339 28916339 A G RABEP2 Silent p.A545A 0.50 TCGA-78-7154-01 16 29918187 29918187 C T KCTD13 3'UTR 0.15 TCGA-78-7154-01 16 30999232 30999232 G T HSD3B7 Nonsense_Mutation p.G280* 0.60 TCGA-78-7154-01 16 49672682 49672682 G A ZNF423 Silent p.L127L 0.65 TCGA-78-7154-01 16 55736319 55736319 C G SLC6A2 Intron 0.70 TCGA-78-7154-01 16 66966049 66966049 C A FAM96B 3'UTR 0.71 TCGA-78-7154-01 16 67132743 67132743 A C CBFB 3'UTR 0.27 TCGA-78-7154-01 16 70166109 70166109 G T PDPR Silent p.L301L 0.29 TCGA-78-7154-01 16 86565716 86565716 G A MTHFSD Silent p.D351D 0.22 TCGA-78-7154-01 17 12666905 12666905 G C MYOCD Missense_Mutation p.D969H 0.08 deleterious(0) probably_damaging(1) TCGA-78-7154-01 17 12905612 12905612 C A ELAC2 Missense_Mutation p.R428L 0.31 deleterious(0) probably_damaging(0.93) TCGA-78-7154-01 17 17131313 17131313 C G FLCN Missense_Mutation p.E47Q 0.45 tolerated(0.45) benign(0.042) TCGA-78-7154-01 17 18051508 18051508 C T MYO15A Silent p.D2225D 0.14 TCGA-78-7154-01 17 27959598 27959598 C T SSH2 Missense_Mutation p.E845K 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.852) TCGA-78-7154-01 17 32953546 32953546 C T TMEM132E Silent p.F156F 0.11 TCGA-78-7154-01 17 34415882 34415882 C T CCL3 3'UTR 0.44 TCGA-78-7154-01 17 35937553 35937553 C G SYNRG Missense_Mutation p.D250H 0.18 tolerated(0.07) benign(0.011) TCGA-78-7154-01 17 37188009 37188009 C T CTD-2206N4.2 5'Flank 0.13 TCGA-78-7154-01 17 37425091 37425091 C T FBXL20 Missense_Mutation p.E308K 0.11 deleterious(0.01) benign(0.254) TCGA-78-7154-01 17 37619117 37619117 A C CDK12 Missense_Mutation p.S265R 0.08 benign(0.184) TCGA-78-7154-01 17 38243028 38243028 C T THRA Silent p.F215F 0.06 TCGA-78-7154-01 17 38244755 38244755 T C THRA Splice_Site p.X328_splice 0.05 TCGA-78-7154-01 17 38975393 38975393 C T KRT10 Missense_Mutation p.G465D 0.34 tolerated(0.44) unknown(0) TCGA-78-7154-01 17 39777023 39777023 G A KRT17 Missense_Mutation p.R357C 0.14 deleterious(0) benign(0.114) TCGA-78-7154-01 17 46620955 46620955 G A HOXB2 Silent p.L182L 0.13 TCGA-78-7154-01 17 48166535 48166535 T C ITGA3 Missense_Mutation p.I1036T 0.28 tolerated(0.19) possibly_damaging(0.506) TCGA-78-7154-01 17 61511886 61511886 G A CYB561 Silent p.F211F 0.12 TCGA-78-7154-01 17 73485368 73485368 G T KIAA0195 Silent p.L262L 0.25 TCGA-78-7154-01 17 7577127 7577127 C T TP53 Missense_Mutation p.E271K 0.58 deleterious(0) probably_damaging(0.999) TCGA-78-7154-01 18 12686344 12686344 C G CEP76 Missense_Mutation p.G347R 0.31 tolerated(0.08) benign(0.123) TCGA-78-7154-01 18 13682015 13682015 T C FAM210A Missense_Mutation p.H21R 0.24 tolerated_low_confidence(0.73) benign(0.001) TCGA-78-7154-01 18 46343675 46343675 C T CTIF Silent p.F487F 0.18 TCGA-78-7154-01 18 47801575 47801575 A G MBD1 Missense_Mutation p.M278T 0.24 tolerated(0.44) benign(0.005) TCGA-78-7154-01 18 5489114 5489114 C A EPB41L3 Silent p.A23A 0.50 TCGA-78-7154-01 19 10602822 10602822 C A KEAP1 Missense_Mutation p.W252C 0.63 deleterious(0) probably_damaging(0.989) TCGA-78-7154-01 19 15760024 15760024 C T CYP4F3 Missense_Mutation p.H194Y 0.71 deleterious(0.04) benign(0.208) TCGA-78-7154-01 19 16757967 16757967 C G SMIM7 3'UTR 0.33 TCGA-78-7154-01 19 2934107 2934107 G A ZNF77 Nonsense_Mutation p.R340* 0.32 TCGA-78-7154-01 19 36831959 36831959 C T ZFP14 Missense_Mutation p.E257K 0.69 tolerated(0.13) possibly_damaging(0.814) TCGA-78-7154-01 19 39660174 39660174 C T PAK4 Intron 0.35 TCGA-78-7154-01 19 42861133 42861133 G A MEGF8 Silent p.K1543K 0.36 TCGA-78-7154-01 19 4548324 4548324 A G SEMA6B Missense_Mutation p.S469P 0.60 tolerated(0.16) benign(0.003) TCGA-78-7154-01 19 47278632 47278632 G A SLC1A5 3'UTR 0.28 TCGA-78-7154-01 19 48845932 48845932 T C TMEM143 Missense_Mutation p.Q277R 0.08 tolerated(0.3) possibly_damaging(0.477) TCGA-78-7154-01 19 49969066 49969066 T A ALDH16A1 Missense_Mutation p.I547N 0.12 deleterious(0) probably_damaging(0.981) TCGA-78-7154-01 19 51021288 51021288 G A LRRC4B Missense_Mutation p.T561M 0.29 tolerated(0.05) possibly_damaging(0.608) TCGA-78-7154-01 19 52090283 52090283 C T ZNF175 Silent p.F233F 0.37 TCGA-78-7154-01 19 52905244 52905244 A T ZNF528 5'UTR 0.33 TCGA-78-7154-01 19 53793115 53793115 C G BIRC8 Missense_Mutation p.Q171H 0.31 tolerated(0.07) possibly_damaging(0.682) TCGA-78-7154-01 19 55222070 55222070 T A AC098784.2 3'Flank 0.68 TCGA-78-7154-01 19 55452960 55452960 C T NLRP7 Silent p.K40K 0.30 TCGA-78-7154-01 19 57640670 57640670 C G USP29 Missense_Mutation p.N209K 0.15 tolerated(1) benign(0) TCGA-78-7154-01 19 58565065 58565065 C T ZSCAN1 Silent p.P291P 0.08 TCGA-78-7154-01 19 58773169 58773169 G C ZNF544 Missense_Mutation p.Q399H 0.14 tolerated(0.05) possibly_damaging(0.815) TCGA-78-7154-01 1 104112718 104112718 C T AMY2B Intron 0.35 TCGA-78-7154-01 1 10510148 10510148 C T CORT 5'UTR 0.22 TCGA-78-7154-01 1 12919947 12919947 G A PRAMEF2 Silent p.K229K 0.13 TCGA-78-7154-01 1 147091285 147091285 C A BCL9 Missense_Mutation p.P442T 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-78-7154-01 1 150266661 150266661 G C MRPS21 5'UTR 0.88 TCGA-78-7154-01 1 155630795 155630795 C G YY1AP1 Intron 0.40 TCGA-78-7154-01 1 158064493 158064493 A G KIRREL Silent p.A619A 0.12 TCGA-78-7154-01 1 158747203 158747203 C T OR6N2 Missense_Mutation p.A75T 0.15 tolerated(1) benign(0.011) TCGA-78-7154-01 1 159683534 159683534 G A CRP Silent p.I152I 0.31 TCGA-78-7154-01 1 159889539 159889539 C G TAGLN2 Missense_Mutation p.Q89H 0.32 deleterious(0) benign(0.316) TCGA-78-7154-01 1 16258058 16258058 G A SPEN Missense_Mutation p.E1775K 0.18 benign(0.298) TCGA-78-7154-01 1 203134366 203134366 C G ADORA1 Intron 0.37 TCGA-78-7154-01 1 21276584 21276584 G A EIF4G3 Silent p.P195P 0.25 TCGA-78-7154-01 1 223176456 223176456 G A DISP1 Missense_Mutation p.D573N 0.33 tolerated(0.16) probably_damaging(0.995) TCGA-78-7154-01 1 231487114 231487114 C T SPRTN Missense_Mutation p.P172L 0.19 deleterious(0) possibly_damaging(0.813) TCGA-78-7154-01 1 235318412 235318412 C T RBM34 Silent p.A127A 0.41 TCGA-78-7154-01 1 240601508 240601508 G A FMN2 Silent p.E1686E 0.12 TCGA-78-7154-01 1 242162301 242162301 G C MAP1LC3C Missense_Mutation p.P4A 0.28 tolerated(0.45) benign(0.055) TCGA-78-7154-01 1 247978907 247978921 AGGACATTCCCCATC - OR14A16 In_Frame_Del p.M38_L42del 0.32 TCGA-78-7154-01 1 248059253 248059253 G T OR2W3 Missense_Mutation p.R122L 0.28 deleterious(0) possibly_damaging(0.907) TCGA-78-7154-01 1 248685664 248685664 G A OR2G6 Silent p.G239G 0.24 TCGA-78-7154-01 1 25729191 25729191 C A RHCE Missense_Mutation p.G128C 0.42 deleterious(0.01) probably_damaging(0.984) TCGA-78-7154-01 1 36557266 36557266 G T ADPRHL2 Missense_Mutation p.G119V 0.35 deleterious(0.01) possibly_damaging(0.766) TCGA-78-7154-01 1 38511276 38511276 C T POU3F1 Silent p.K380K 0.24 TCGA-78-7154-01 1 45472620 45472620 C T HECTD3 Intron 0.22 TCGA-78-7154-01 1 45808899 45808899 C T TOE1 Missense_Mutation p.P353L 0.19 tolerated(0.12) benign(0.108) TCGA-78-7154-01 1 52249623 52249623 T C OSBPL9 Missense_Mutation p.I527T 0.19 deleterious(0) probably_damaging(0.932) TCGA-78-7154-01 1 53980329 53980329 G T GLIS1 Missense_Mutation p.P443T 0.11 deleterious(0.03) probably_damaging(0.996) TCGA-78-7154-01 1 74540470 74540470 A G LRRIQ3 Missense_Mutation p.I291T 0.25 tolerated(0.06) benign(0.013) TCGA-78-7154-01 1 82417743 82417743 G T LPHN2 Nonsense_Mutation p.E567* 0.56 TCGA-78-7154-01 1 99771294 99771294 C A LPPR4 Missense_Mutation p.H340Q 0.40 tolerated(0.67) benign(0.002) TCGA-78-7154-01 1 99771339 99771339 C A LPPR4 Missense_Mutation p.N355K 0.15 tolerated(0.82) benign(0.031) TCGA-78-7154-01 1 99772332 99772332 G C LPPR4 Missense_Mutation p.K686N 0.16 tolerated(0.13) benign(0.006) TCGA-78-7154-01 20 16730565 16730565 G T OTOR Missense_Mutation p.Q91H 0.16 tolerated(0.33) possibly_damaging(0.447) TCGA-78-7154-01 20 2816190 2816190 C A PCED1A Missense_Mutation p.R428L 0.62 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-78-7154-01 20 30720911 30720911 C T TM9SF4 Silent p.N37N 0.08 TCGA-78-7154-01 20 35885254 35885254 G A GHRH Silent p.L13L 0.17 TCGA-78-7154-01 20 42788372 42788372 C A JPH2 Missense_Mutation p.R352L 0.29 deleterious(0) possibly_damaging(0.588) TCGA-78-7154-01 20 44444383 44444383 A G UBE2C Silent p.G140G 0.12 TCGA-78-7154-01 20 5159590 5159590 C G CDS2 Missense_Mutation p.L173V 0.39 deleterious(0) probably_damaging(0.954) TCGA-78-7154-01 20 54823932 54823932 G A MC3R Silent p.Q11Q 0.32 TCGA-78-7154-01 20 57767550 57767550 C G ZNF831 Silent p.L492L 0.28 TCGA-78-7154-01 20 62065067 62065067 A G KCNQ2 Intron 0.26 TCGA-78-7154-01 21 31692174 31692174 G A KRTAP26-1 Silent p.C60C 0.43 TCGA-78-7154-01 21 34951771 34951771 G A DONSON Missense_Mutation p.S483L 0.15 deleterious(0.03) benign(0.049) TCGA-78-7154-01 21 43280475 43280475 C G PRDM15 Missense_Mutation p.E300Q 0.58 deleterious_low_confidence(0.02) benign(0.011) TCGA-78-7154-01 21 47786839 47786839 G A PCNT Missense_Mutation p.E984K 0.26 possibly_damaging(0.636) TCGA-78-7154-01 22 17072541 17072541 G A CCT8L2 Silent p.D300D 0.28 TCGA-78-7154-01 22 17119558 17119558 A T TPTEP1 RNA 0.32 TCGA-78-7154-01 22 17472947 17472947 G A GAB4 Silent p.L98L 0.34 TCGA-78-7154-01 22 23047125 23047125 C A IGLV3-22 Missense_Mutation p.Q55K 0.12 deleterious(0.01) probably_damaging(0.926) TCGA-78-7154-01 22 26861450 26861450 G A HPS4 Silent p.L258L 0.16 TCGA-78-7154-01 22 38120013 38120013 C T TRIOBP Missense_Mutation p.R484W 0.19 tolerated_low_confidence(0.15) possibly_damaging(0.689) TCGA-78-7154-01 22 38466861 38466861 G T PICK1 Missense_Mutation p.R152S 0.22 tolerated(0.08) benign(0.133) TCGA-78-7154-01 22 38617415 38617415 G C TMEM184B 3'UTR 0.43 TCGA-78-7154-01 22 44322984 44322984 C T PNPLA3 Silent p.T119T 0.29 TCGA-78-7154-01 2 10282472 10282472 A G C2orf48 Missense_Mutation p.S55G 0.16 deleterious_low_confidence(0) benign(0.294) TCGA-78-7154-01 2 107460238 107460238 G T ST6GAL2 Missense_Mutation p.H66N 0.16 benign(0.035) TCGA-78-7154-01 2 129025706 129025706 C T HS6ST1 3'UTR 0.33 TCGA-78-7154-01 2 131797647 131797647 G A ARHGEF4 Missense_Mutation p.G269E 0.28 tolerated(0.79) benign(0) TCGA-78-7154-01 2 159196885 159196885 G C CCDC148 Missense_Mutation p.Q119E 0.07 tolerated(0.2) benign(0) TCGA-78-7154-01 2 162242025 162242025 A C PSMD14 Silent p.G171G 0.21 TCGA-78-7154-01 2 163124634 163124634 C G IFIH1 Missense_Mutation p.E924Q 0.10 deleterious(0) probably_damaging(0.997) TCGA-78-7154-01 2 166930121 166930121 G A SCN1A Missense_Mutation p.T4I 0.23 deleterious_low_confidence(0.02) benign(0.07) TCGA-78-7154-01 2 179452360 179452360 C G TTN Missense_Mutation p.D21226H 0.17 TCGA-78-7154-01 2 187703872 187703872 T C ZSWIM2 Missense_Mutation p.E103G 0.31 deleterious(0) probably_damaging(0.999) TCGA-78-7154-01 2 189931462 189931462 C T COL5A2 Missense_Mutation p.G483E 0.31 probably_damaging(0.998) TCGA-78-7154-01 2 198949080 198949080 T C PLCL1 Missense_Mutation p.I280T 0.48 deleterious(0) possibly_damaging(0.77) TCGA-78-7154-01 2 201515816 201515816 G A AOX1 Silent p.R989R 0.14 TCGA-78-7154-01 2 219509702 219509702 T G ZNF142 Missense_Mutation p.M513L 0.33 deleterious(0.03) benign(0.03) TCGA-78-7154-01 2 220327061 220327061 C T SPEG Silent p.V886V 0.38 TCGA-78-7154-01 2 224642491 224642491 C A AP1S3 Silent p.R33R 0.40 TCGA-78-7154-01 2 224642492 224642492 C A AP1S3 Missense_Mutation p.R33L 0.40 deleterious(0.03) possibly_damaging(0.775) TCGA-78-7154-01 2 228996711 228996711 G A SPHKAP Silent p.I41I 0.21 TCGA-78-7154-01 2 234581085 234581085 G A UGT1A9 Missense_Mutation p.A169T 0.14 tolerated(0.08) benign(0.004) TCGA-78-7154-01 2 242140746 242140746 C T ANO7 Silent p.F250F 0.34 TCGA-78-7154-01 2 242690737 242690737 G A D2HGDH Silent p.L358L 0.43 TCGA-78-7154-01 2 27886720 27886720 G A SLC4A1AP Missense_Mutation p.R34K 0.20 tolerated_low_confidence(0.1) benign(0.004) TCGA-78-7154-01 2 30142880 30142880 G C ALK Missense_Mutation p.L216V 0.56 tolerated_low_confidence(0.06) benign(0.079) TCGA-78-7154-01 2 31165110 31165110 C T GALNT14 Silent p.G301G 0.72 TCGA-78-7154-01 2 32800426 32800426 C T BIRC6 Missense_Mutation p.R4450C 0.62 probably_damaging(0.953) TCGA-78-7154-01 2 46607470 46607470 G C EPAS1 Silent p.A553A 0.71 TCGA-78-7154-01 2 50149334 50149334 G A NRXN1 Silent p.I1464I 0.27 TCGA-78-7154-01 2 64169644 64169644 G C VPS54 Silent p.L451L 0.52 TCGA-78-7154-01 2 65296785 65296786 - A CEP68 Frame_Shift_Ins p.T70Nfs*2 0.36 TCGA-78-7154-01 2 74042383 74042383 C T C2orf78 Missense_Mutation p.L345F 0.45 tolerated(0.76) benign(0.056) TCGA-78-7154-01 2 79363278 79363278 C G REG1P RNA 0.47 TCGA-78-7154-01 2 99778437 99778437 C T LIPT1 Missense_Mutation p.S6L 0.59 tolerated_low_confidence(0.09) benign(0.011) TCGA-78-7154-01 3 10136010 10136010 G T FANCD2 Missense_Mutation p.C1309F 0.42 deleterious(0.03) probably_damaging(0.935) TCGA-78-7154-01 3 118621435 118621435 T A IGSF11 Missense_Mutation p.T410S 0.35 deleterious(0.02) benign(0.027) TCGA-78-7154-01 3 120320118 120320118 C T NDUFB4 Intron 0.11 TCGA-78-7154-01 3 126382195 126382195 A C NUP210P1 RNA 0.17 TCGA-78-7154-01 3 128631655 128631655 A T ACAD9 3'UTR 0.65 TCGA-78-7154-01 3 137843425 137843425 C G A4GNT Missense_Mutation p.W235S 0.28 tolerated(0.16) benign(0.285) TCGA-78-7154-01 3 138762903 138762903 C T PRR23C Missense_Mutation p.S187N 0.29 tolerated(0.32) benign(0.305) TCGA-78-7154-01 3 16336367 16336367 G T OXNAD1 Missense_Mutation p.D99Y 0.32 deleterious(0) probably_damaging(0.996) TCGA-78-7154-01 3 186917551 186917551 G T RTP1 Missense_Mutation p.R162L 0.69 tolerated(0.2) benign(0.028) TCGA-78-7154-01 3 24174828 24174828 T C THRB Silent p.K288K 0.11 TCGA-78-7154-01 3 32031784 32031784 A G ZNF860 Missense_Mutation p.K405E 0.15 deleterious(0.02) benign(0.039) TCGA-78-7154-01 3 37053345 37053345 G A MLH1 Missense_Mutation p.V194I 0.18 tolerated(0.07) benign(0.141) TCGA-78-7154-01 3 44542105 44542105 G C ZNF852 Nonsense_Mutation p.S55* 0.22 TCGA-78-7154-01 3 51198034 51198034 A G DOCK3 Missense_Mutation p.Y313C 0.47 deleterious(0) possibly_damaging(0.653) TCGA-78-7154-01 3 62240846 62240846 G A PTPRG Missense_Mutation p.E839K 0.39 deleterious(0.01) possibly_damaging(0.799) TCGA-78-7154-01 3 8543559 8543559 T G LMCD1 5'UTR 0.10 TCGA-78-7154-01 3 93615521 93615521 G A PROS1 Silent p.C288C 0.27 TCGA-78-7154-01 4 13603329 13603329 G C BOD1L1 Missense_Mutation p.A1732G 0.17 possibly_damaging(0.606) TCGA-78-7154-01 4 151849715 151849715 C G LRBA Missense_Mutation p.E168Q 0.11 deleterious(0.04) possibly_damaging(0.57) TCGA-78-7154-01 4 169393924 169393924 A T DDX60L 5'UTR 0.43 TCGA-78-7154-01 4 175598396 175598396 C T GLRA3 Missense_Mutation p.G254R 0.19 deleterious(0.01) probably_damaging(0.984) TCGA-78-7154-01 4 25394003 25394003 G A ANAPC4 Missense_Mutation p.R250Q 0.17 tolerated(0.32) possibly_damaging(0.878) TCGA-78-7154-01 4 30725930 30725930 G A PCDH7 Silent p.Q962Q 0.16 TCGA-78-7154-01 4 47514737 47514737 C G ATP10D Missense_Mutation p.F60L 0.16 tolerated(0.15) benign(0.005) TCGA-78-7154-01 4 52890175 52890175 C A SGCB Missense_Mutation p.S302I 0.35 tolerated(0.23) benign(0.078) TCGA-78-7154-01 4 62758580 62758580 G A LPHN3 Missense_Mutation p.E495K 0.20 tolerated(0.1) benign(0.042) TCGA-78-7154-01 4 654380 654380 G A PDE6B Missense_Mutation p.R531Q 0.17 tolerated(0.35) benign(0.102) TCGA-78-7154-01 4 69978250 69978250 C T UGT2B7 Silent p.F462F 0.24 TCGA-78-7154-01 4 77134720 77134720 G A SCARB2 5'UTR 0.92 TCGA-78-7154-01 4 871400 871400 C T GAK Intron 0.11 TCGA-78-7154-01 4 95444920 95444920 G T PDLIM5 Missense_Mutation p.D48Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-78-7154-01 5 131995955 131995955 G A IL13 Missense_Mutation p.R141H 0.15 tolerated(0.13) benign(0.036) TCGA-78-7154-01 5 140581426 140581426 G A PCDHB11 Silent p.A693A 0.43 TCGA-78-7154-01 5 140711485 140711485 A T PCDHGA1 Nonsense_Mutation p.R412* 0.42 TCGA-78-7154-01 5 150923577 150923577 C G FAT2 Missense_Mutation p.D2371H 0.24 probably_damaging(1) TCGA-78-7154-01 5 167826495 167826495 C T WWC1 Silent p.V171V 0.22 TCGA-78-7154-01 5 175110317 175110317 C T HRH2 Silent p.V27V 0.35 TCGA-78-7154-01 5 177642318 177642318 G A PHYKPL Silent p.L347L 0.41 TCGA-78-7154-01 5 23524634 23524634 G A PRDM9 Missense_Mutation p.R381K 0.25 tolerated(0.25) benign(0.018) TCGA-78-7154-01 5 36166718 36166718 C T SKP2 Missense_Mutation p.R164C 0.25 tolerated(0.07) benign(0.286) TCGA-78-7154-01 5 37379592 37379592 G A WDR70 Silent p.V9V 0.30 TCGA-78-7154-01 5 39394407 39394407 C A DAB2 Nonsense_Mutation p.E6* 0.26 TCGA-78-7154-01 5 43299040 43299040 C T HMGCS1 Missense_Mutation p.E10K 0.19 tolerated(0.59) benign(0.065) TCGA-78-7154-01 6 105406144 105406144 G A LIN28B Missense_Mutation p.D61N 0.08 deleterious(0.01) possibly_damaging(0.587) TCGA-78-7154-01 6 106554835 106554835 G C PRDM1 Missense_Mutation p.R651P 0.15 deleterious(0) probably_damaging(1) TCGA-78-7154-01 6 133777745 133777745 C A EYA4 Missense_Mutation p.A110D 0.08 tolerated(0.09) benign(0.087) TCGA-78-7154-01 6 161071369 161071369 C T LPA Splice_Site p.X70_splice 0.40 TCGA-78-7154-01 6 26285365 26285365 G A HIST1H4H 3'UTR 0.22 TCGA-78-7154-01 6 27420788 27420788 C A ZNF184 Missense_Mutation p.G184W 0.12 tolerated(0.15) benign(0.365) TCGA-78-7154-01 6 29556415 29556415 C T OR2H2 Missense_Mutation p.R232W 0.10 tolerated(0.18) benign(0.004) TCGA-78-7154-01 6 66112465 66112465 C A EYS Missense_Mutation p.D364Y 0.34 deleterious(0) benign(0.278) TCGA-78-7154-01 6 86227558 86227558 G A SNX14 Silent p.F728F 0.12 TCGA-78-7154-01 6 87966229 87966229 G A ZNF292 Missense_Mutation p.G961D 0.30 tolerated_low_confidence(0.24) benign(0.005) TCGA-78-7154-01 7 117120048 117120048 G C CFTR 5'UTR 0.03 TCGA-78-7154-01 7 117171025 117171025 G A CFTR Missense_Mutation p.E116K 0.04 deleterious(0.01) possibly_damaging(0.564) TCGA-78-7154-01 7 129592459 129592459 G A UBE2H 5'UTR 0.11 TCGA-78-7154-01 7 130038724 130038724 C A CEP41 3'UTR 0.06 TCGA-78-7154-01 7 142919577 142919577 A T TAS2R40 Missense_Mutation p.R136W 0.27 tolerated(0.17) benign(0.02) TCGA-78-7154-01 7 154659728 154659728 G A DPP6 Missense_Mutation p.E580K 0.16 tolerated(0.57) benign(0.006) TCGA-78-7154-01 7 17931175 17931175 G A SNX13 Silent p.L104L 0.27 TCGA-78-7154-01 7 43506115 43506115 C T HECW1 Missense_Mutation p.A954V 0.35 deleterious(0.02) probably_damaging(0.99) TCGA-78-7154-01 7 45697356 45697356 G C ADCY1 Silent p.L393L 0.22 TCGA-78-7154-01 7 57528802 57528802 C A ZNF716 Missense_Mutation p.S212Y 0.35 tolerated(0.29) benign(0.01) TCGA-78-7154-01 7 91694636 91694636 G A AKAP9 Silent p.V2023V 0.20 TCGA-78-7154-01 7 91851243 91851243 C T KRIT1 Silent p.V512V 0.46 TCGA-78-7154-01 7 92763666 92763666 C A SAMD9L Missense_Mutation p.R540I 0.05 tolerated(0.06) possibly_damaging(0.465) TCGA-78-7154-01 7 94228233 94228233 C G SGCE Missense_Mutation p.K369N 0.09 tolerated(0.11) possibly_damaging(0.55) TCGA-78-7154-01 7 95125216 95125216 C A ASB4 Missense_Mutation p.H112N 0.11 deleterious(0) probably_damaging(0.999) TCGA-78-7154-01 7 98586403 98586403 C G TRRAP Missense_Mutation p.N3139K 0.05 probably_damaging(0.992) TCGA-78-7154-01 7 99490035 99490035 C A TRIM4 Silent p.A418A 0.08 TCGA-78-7154-01 8 102656404 102656405 - T GRHL2 Frame_Shift_Ins p.G523Wfs*25 0.16 TCGA-78-7154-01 8 103271226 103271226 G T UBR5 Missense_Mutation p.F2696L 0.26 deleterious(0) possibly_damaging(0.891) TCGA-78-7154-01 8 11058765 11058765 G A XKR6 Silent p.G28G 0.33 TCGA-78-7154-01 8 113299453 113299453 G A CSMD3 Silent p.G3057G 0.08 TCGA-78-7154-01 8 113318320 113318320 G T CSMD3 Silent p.R2663R 0.29 TCGA-78-7154-01 8 113331153 113331153 G A CSMD3 Missense_Mutation p.P2425S 0.10 deleterious(0.03) benign(0.145) TCGA-78-7154-01 8 125498769 125498769 C T RNF139 Silent p.G293G 0.07 TCGA-78-7154-01 8 133880403 133880403 G C TG Missense_Mutation p.Q37H 0.10 tolerated(0.13) probably_damaging(0.99) TCGA-78-7154-01 8 133883613 133883613 C A TG Missense_Mutation p.Q99K 0.08 tolerated(0.09) benign(0.11) TCGA-78-7154-01 8 143603424 143603424 G T BAI1 Silent p.T1041T 0.28 TCGA-78-7154-01 8 145583767 145583767 C T SLC52A2 Silent p.V205V 0.14 TCGA-78-7154-01 8 19822849 19822849 C T LPL 3'UTR 0.13 TCGA-78-7154-01 8 20110540 20110540 C T LZTS1 Missense_Mutation p.R301H 0.18 tolerated(0.27) benign(0.012) TCGA-78-7154-01 8 35579764 35579764 G T UNC5D Missense_Mutation p.G385V 0.04 deleterious(0.01) probably_damaging(0.962) TCGA-78-7154-01 8 57354089 57354089 C G PENK Silent p.V182V 0.33 TCGA-78-7154-01 8 72975736 72975736 G C TRPA1 Nonsense_Mutation p.S208* 0.52 TCGA-78-7154-01 8 87229783 87229783 G A SLC7A13 Silent p.F365F 0.30 TCGA-78-7154-01 8 97247794 97247794 G A UQCRB 5'Flank 0.35 TCGA-78-7154-01 9 114133964 114133964 T C KIAA0368 Silent p.P1736P 0.46 TCGA-78-7154-01 9 118155 118155 G A FOXD4 5'UTR 0.61 TCGA-78-7154-01 9 127904938 127904938 C G SCAI Missense_Mutation p.E24D 0.09 tolerated_low_confidence(0.41) benign(0.388) TCGA-78-7154-01 9 132687277 132687277 A C FNBP1 Missense_Mutation p.S317A 0.24 tolerated(0.39) benign(0.007) TCGA-78-7154-01 9 67968267 67968267 A G ANKRD20A1 Missense_Mutation p.Y609C 0.28 deleterious(0) probably_damaging(0.926) TCGA-78-7154-01 9 69423530 69423530 A G ANKRD20A4 Missense_Mutation p.Y609C 0.24 deleterious(0) benign(0.022) TCGA-78-7154-01 9 73152282 73152282 C T TRPM3 Silent p.E1237E 0.34 TCGA-78-7154-01 9 77286749 77286750 - A RORB Frame_Shift_Ins p.I388Nfs*16 0.21 TCGA-78-7154-01 9 77415379 77415379 G A TRPM6 Silent p.L677L 0.16 TCGA-78-7154-01 9 79320553 79320553 C G PRUNE2 Missense_Mutation p.D2213H 0.27 deleterious(0.01) possibly_damaging(0.565) TCGA-78-7154-01 9 86258488 86258488 C G IDNK Silent p.L119L 0.24 TCGA-78-7154-01 X 11778578 11778578 G C MSL3 Missense_Mutation p.R81T 0.56 deleterious(0.01) probably_damaging(0.966) TCGA-78-7154-01 X 134679428 134679428 G C DDX26B Missense_Mutation p.Q90H 0.42 tolerated(0.43) probably_damaging(0.991) TCGA-78-7154-01 X 142716991 142716991 C T SLITRK4 Missense_Mutation p.R645H 0.29 deleterious(0) probably_damaging(0.991) TCGA-78-7154-01 X 48849862 48849863 TG - GRIPAP1 Frame_Shift_Del p.T145Sfs*25 0.65 TCGA-78-7154-01 X 48933333 48933333 G A AF196779.12 Missense_Mutation p.S97F 0.70 deleterious(0) probably_damaging(0.926) TCGA-78-7154-01 X 54956769 54956769 C A TRO Missense_Mutation p.S1204R 0.59 deleterious(0.03) probably_damaging(0.96) TCGA-78-7154-01 X 65242407 65242407 T G VSIG4 Intron 0.37 TCGA-78-7154-01 X 70340946 70340946 G C MED12 Missense_Mutation p.E227Q 0.29 benign(0.186) TCGA-78-7154-01 X 74494380 74494380 A G UPRT Silent p.L97L 0.63 TCGA-78-7154-01 X 90691232 90691232 T C PABPC5 Missense_Mutation p.F219S 0.50 deleterious(0) probably_damaging(1) TCGA-78-7154-01 X 9679741 9679741 C T TBL1X Silent p.S510S 0.73 TCGA-78-7155-01 10 101370476 101370476 C G SLC25A28 3'UTR 1.00 TCGA-78-7155-01 10 101610458 101610458 A G ABCC2 Silent p.T1471T 0.71 TCGA-78-7155-01 10 102054763 102054763 C T PKD2L1 Missense_Mutation p.A492T 0.88 tolerated(0.05) probably_damaging(1) TCGA-78-7155-01 10 102822830 102822830 A T KAZALD1 Missense_Mutation p.T161S 0.70 tolerated(0.81) benign(0.05) TCGA-78-7155-01 10 103372211 103372211 C A FBXW4 Missense_Mutation p.G287V 0.81 deleterious(0) probably_damaging(0.992) TCGA-78-7155-01 10 105727509 105727511 CTT - SLK In_Frame_Del p.F4del 0.85 TCGA-78-7155-01 10 106207461 106207461 G T CCDC147 Missense_Mutation p.K754N 0.83 deleterious(0) probably_damaging(0.993) TCGA-78-7155-01 10 108521397 108521397 C A SORCS1 Missense_Mutation p.G303V 0.91 deleterious(0) probably_damaging(0.982) TCGA-78-7155-01 10 115312947 115312948 GG - HABP2 Frame_Shift_Del 0.41 TCGA-78-7155-01 10 116919881 116919881 G T ATRNL1 Missense_Mutation p.G304C 0.86 deleterious(0.01) possibly_damaging(0.606) TCGA-78-7155-01 10 118117397 118117397 G T CCDC172 Missense_Mutation p.E200D 0.54 deleterious(0) probably_damaging(0.968) TCGA-78-7155-01 10 118464761 118464761 T G HSPA12A Missense_Mutation p.Q52P 0.33 tolerated(0.22) benign(0.003) TCGA-78-7155-01 10 118464790 118464790 C A HSPA12A Splice_Site p.X43_splice 0.76 TCGA-78-7155-01 10 121662451 121662451 A G SEC23IP Silent p.V279V 0.79 TCGA-78-7155-01 10 124351009 124351009 A G DMBT1 Missense_Mutation p.I718V 0.79 tolerated(0.64) unknown(0) TCGA-78-7155-01 10 127426992 127426992 G T EDRF1 Missense_Mutation p.Q653H 0.76 deleterious(0.03) possibly_damaging(0.631) TCGA-78-7155-01 10 13264168 13264168 G T UCMA Missense_Mutation p.Q118K 0.89 deleterious(0) probably_damaging(0.956) TCGA-78-7155-01 10 135000110 135000110 C T KNDC1 Nonsense_Mutation p.Q420* 0.81 TCGA-78-7155-01 10 15296861 15296861 G T FAM171A1 Missense_Mutation p.R146S 0.85 tolerated(0.16) benign(0.135) TCGA-78-7155-01 10 15658514 15658514 T A ITGA8 Nonsense_Mutation p.R482* 1.00 TCGA-78-7155-01 10 20335798 20335798 G C PLXDC2 Missense_Mutation p.E109Q 0.88 tolerated(0.05) benign(0.406) TCGA-78-7155-01 10 21903816 21903816 A G MLLT10 Missense_Mutation p.Q189R 0.06 deleterious(0.02) possibly_damaging(0.864) TCGA-78-7155-01 10 26500939 26500939 G A MYO3A 3'UTR 0.11 TCGA-78-7155-01 10 26507994 26507994 A C GAD2 Silent p.G103G 0.60 TCGA-78-7155-01 10 26825135 26825135 G - APBB1IP Frame_Shift_Del p.G345Efs*28 0.35 TCGA-78-7155-01 10 27294434 27294434 C T ANKRD26 3'UTR 0.64 TCGA-78-7155-01 10 30316682 30316682 G T KIAA1462 Silent p.R799R 0.62 TCGA-78-7155-01 10 3206021 3206021 G A PITRM1 Silent p.H229H 0.75 TCGA-78-7155-01 10 33468902 33468902 C A NRP1 3'UTR 0.18 TCGA-78-7155-01 10 35929082 35929082 C A FZD8 Missense_Mutation p.G426C 0.17 deleterious(0) probably_damaging(1) TCGA-78-7155-01 10 38343357 38343357 A T ZNF33A Missense_Mutation p.H102L 0.70 tolerated(0.33) possibly_damaging(0.798) TCGA-78-7155-01 10 38406450 38406450 G T ZNF37A Missense_Mutation p.G124V 0.63 tolerated(0.08) benign(0.064) TCGA-78-7155-01 10 45602158 45602158 G T RSU1P2 RNA 0.23 TCGA-78-7155-01 10 48382182 48382182 T C RBP3 Missense_Mutation p.Y1156C 0.27 deleterious(0) probably_damaging(0.926) TCGA-78-7155-01 10 48388734 48388734 G - RBP3 Frame_Shift_Del p.P715Hfs*43 0.11 TCGA-78-7155-01 10 48389347 48389347 C T RBP3 Missense_Mutation p.D511N 0.52 tolerated(0.25) possibly_damaging(0.822) TCGA-78-7155-01 10 49431294 49431294 C A FRMPD2 Silent p.L396L 0.49 TCGA-78-7155-01 10 50121911 50121911 C T LRRC18 Missense_Mutation p.S97N 0.48 tolerated(1) benign(0.004) TCGA-78-7155-01 10 50272760 50272760 C A VSTM4 Missense_Mutation p.C219F 0.40 tolerated(0.1) probably_damaging(0.996) TCGA-78-7155-01 10 50374978 50374978 C G C10orf128 Missense_Mutation p.M58I 0.26 deleterious(0.03) possibly_damaging(0.888) TCGA-78-7155-01 10 50723798 50723798 C A ERCC6-PGBD3 Missense_Mutation p.V923L 0.64 tolerated_low_confidence(0.93) unknown(0) TCGA-78-7155-01 10 50964944 50964944 A T OGDHL Missense_Mutation p.S85T 0.45 tolerated(0.7) benign(0) TCGA-78-7155-01 10 55566820 55566820 C G PCDH15 Missense_Mutation p.S1522T 0.19 deleterious_low_confidence(0) benign(0.062) TCGA-78-7155-01 10 55570367 55570367 C A PCDH15 Missense_Mutation p.E1484D 0.78 benign(0.152) TCGA-78-7155-01 10 55591103 55591103 T A PCDH15 Missense_Mutation p.I1392F 0.80 deleterious(0) probably_damaging(0.917) TCGA-78-7155-01 10 55912946 55912946 G T PCDH15 Silent p.T566T 0.81 TCGA-78-7155-01 10 6104107 6104107 G C IL2RA Nonsense_Mutation p.S3* 0.22 TCGA-78-7155-01 10 71332416 71332416 G T NEUROG3 Silent p.A128A 0.88 TCGA-78-7155-01 10 72520564 72520564 G C ADAMTS14 Silent p.L1212L 0.77 TCGA-78-7155-01 10 73050686 73050686 G T UNC5B Missense_Mutation p.G372W 0.77 deleterious(0) possibly_damaging(0.827) TCGA-78-7155-01 10 73826741 73826741 G A SPOCK2 Missense_Mutation p.R283C 0.36 deleterious(0) probably_damaging(0.965) TCGA-78-7155-01 10 7608211 7608211 C A ITIH5 Missense_Mutation p.R770I 0.89 deleterious(0.02) probably_damaging(1) TCGA-78-7155-01 10 7611676 7611676 G T ITIH5 Missense_Mutation p.Q702K 0.83 tolerated(0.12) benign(0.138) TCGA-78-7155-01 10 7679202 7679202 C A ITIH5 Missense_Mutation p.G214V 0.78 tolerated(0.18) benign(0.044) TCGA-78-7155-01 10 7829905 7829905 C A KIN 5'UTR 0.76 TCGA-78-7155-01 10 78832898 78832898 G T KCNMA1 Missense_Mutation p.S569Y 0.83 deleterious(0) probably_damaging(0.99) TCGA-78-7155-01 10 80976007 80976007 G A ZMIZ1 Missense_Mutation p.D86N 0.81 benign(0.214) TCGA-78-7155-01 10 87379728 87379728 C T GRID1 Silent p.T752T 0.85 TCGA-78-7155-01 10 88425509 88425509 G T OPN4 3'UTR 0.78 TCGA-78-7155-01 10 89653808 89653808 G T PTEN Nonsense_Mutation p.G36* 0.81 TCGA-78-7155-01 10 90429683 90429683 A T LIPF Missense_Mutation p.H181L 0.80 deleterious(0) probably_damaging(0.998) TCGA-78-7155-01 10 98157013 98157013 G A TLL2 Silent p.D438D 0.76 TCGA-78-7155-01 10 98170154 98170154 G T TLL2 Missense_Mutation p.H376N 0.72 tolerated(0.07) benign(0.301) TCGA-78-7155-01 10 98411116 98411116 T C PIK3AP1 Missense_Mutation p.N293D 0.38 tolerated(0.36) benign(0.038) TCGA-78-7155-01 10 98741316 98741316 G T C10orf12 Nonsense_Mutation p.E57* 0.36 TCGA-78-7155-01 11 100933247 100933247 G A PGR Silent p.L715L 0.31 TCGA-78-7155-01 11 103048482 103048482 G T DYNC2H1 Missense_Mutation p.M2024I 0.22 benign(0.008) TCGA-78-7155-01 11 105804547 105804547 C G GRIA4 Missense_Mutation p.R716G 0.15 deleterious(0) probably_damaging(1) TCGA-78-7155-01 11 108382616 108382616 T A EXPH5 Silent p.S1206S 0.26 TCGA-78-7155-01 11 111166978 111166978 T A COLCA1 Missense_Mutation p.S76C 0.25 possibly_damaging(0.843) TCGA-78-7155-01 11 111959687 111959687 C G SDHD Missense_Mutation p.S89C 0.26 tolerated(0.1) benign(0.021) TCGA-78-7155-01 11 112100953 112100953 G T PTS Missense_Mutation p.E62D 0.62 tolerated(0.17) benign(0.002) TCGA-78-7155-01 11 113102898 113102899 - A NCAM1 Frame_Shift_Ins p.L467Afs*64 0.40 TCGA-78-7155-01 11 113670056 113670056 G T USP28 Missense_Mutation p.P1047Q 0.26 deleterious(0) probably_damaging(1) TCGA-78-7155-01 11 1155780 1155780 C T MUC5AC Silent p.G156G 0.81 TCGA-78-7155-01 11 117153860 117153860 G A RNF214 Missense_Mutation p.M660I 0.29 tolerated(0.24) possibly_damaging(0.672) TCGA-78-7155-01 11 117335788 117335788 C T DSCAML1 Silent p.T1105T 0.59 TCGA-78-7155-01 11 117667871 117667871 C G DSCAML1 Missense_Mutation p.R35P 0.23 deleterious_low_confidence(0) unknown(0) TCGA-78-7155-01 11 117710519 117710519 A G FXYD6 Nonstop_Mutation p.*96Rext*16 0.53 TCGA-78-7155-01 11 118081211 118081211 C A AMICA1 Nonsense_Mutation p.E139* 0.27 TCGA-78-7155-01 11 120008389 120008389 T A TRIM29 Silent p.P117P 0.48 TCGA-78-7155-01 11 120827558 120827558 G T GRIK4 Missense_Mutation p.Q590H 0.52 deleterious(0) probably_damaging(0.998) TCGA-78-7155-01 11 120833380 120833380 C A GRIK4 Silent p.G752G 0.47 TCGA-78-7155-01 11 121177947 121177947 A G SC5D Missense_Mutation p.H209R 0.41 deleterious(0) probably_damaging(1) TCGA-78-7155-01 11 1213540 1213540 T C MUC5AC RNA 0.05 TCGA-78-7155-01 11 121476192 121476192 T A SORL1 Missense_Mutation p.D1620E 0.23 tolerated(0.13) probably_damaging(0.999) TCGA-78-7155-01 11 123777827 123777827 C T OR8D4 Missense_Mutation p.S230F 0.56 deleterious(0) probably_damaging(1) TCGA-78-7155-01 11 124180357 124180357 A T OR8D1 Missense_Mutation p.F102L 0.38 deleterious(0) benign(0.164) TCGA-78-7155-01 11 124189589 124189589 A G OR8D2 Missense_Mutation p.C169R 0.28 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 11 124413487 124413487 G T OR8B12 Missense_Mutation p.L22M 0.53 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-78-7155-01 11 124742393 124742393 G A ROBO3 Silent p.Q425Q 0.41 TCGA-78-7155-01 11 125547943 125547943 G T ACRV1 Missense_Mutation p.T101N 0.24 tolerated(0.13) benign(0.007) TCGA-78-7155-01 11 128839000 128839000 C A ARHGAP32 Missense_Mutation p.Q2022H 0.35 tolerated_low_confidence(0.29) possibly_damaging(0.723) TCGA-78-7155-01 11 129762765 129762765 T C NFRKB Missense_Mutation p.S7G 0.34 deleterious_low_confidence(0) unknown(0) TCGA-78-7155-01 11 130011868 130011868 G T APLP2 Missense_Mutation p.G697C 0.37 deleterious(0) probably_damaging(1) TCGA-78-7155-01 11 134182308 134182308 C A GLB1L3 Silent p.S451S 0.45 TCGA-78-7155-01 11 13513928 13513928 C A PTH 3'UTR 0.87 TCGA-78-7155-01 11 15197325 15197325 T A INSC Missense_Mutation p.M79K 0.70 deleterious(0) possibly_damaging(0.854) TCGA-78-7155-01 11 1629419 1629419 A T KRTAP5-3 Missense_Mutation p.V66D 0.45 tolerated(0.08) unknown(0) TCGA-78-7155-01 11 17485047 17485047 C A ABCC8 Missense_Mutation p.G173W 1.00 tolerated(0.24) possibly_damaging(0.808) TCGA-78-7155-01 11 18528444 18528444 C T TSG101 Missense_Mutation p.G170R 0.37 tolerated(0.06) probably_damaging(0.923) TCGA-78-7155-01 11 18731902 18731902 G C IGSF22 Silent p.S891S 0.77 TCGA-78-7155-01 11 18740226 18740226 G T IGSF22 Missense_Mutation p.T249N 0.79 tolerated(0.1) benign(0.243) TCGA-78-7155-01 11 2161380 2161380 C A IGF2 Silent p.V49V 0.21 TCGA-78-7155-01 11 26556081 26556081 C G ANO3 Silent p.T316T 0.84 TCGA-78-7155-01 11 26664763 26664763 G T ANO3 Silent p.A770A 0.75 TCGA-78-7155-01 11 30033117 30033117 G T KCNA4 Missense_Mutation p.P370H 0.92 deleterious(0) probably_damaging(0.995) TCGA-78-7155-01 11 30601890 30601890 C A MPPED2 Missense_Mutation p.V11F 0.85 deleterious(0.02) probably_damaging(0.954) TCGA-78-7155-01 11 372748 372748 G T B4GALNT4 Silent p.R114R 0.84 TCGA-78-7155-01 11 40137665 40137665 C A LRRC4C Missense_Mutation p.V60L 0.43 deleterious(0) possibly_damaging(0.735) TCGA-78-7155-01 11 4411570 4411570 C A TRIM21 Missense_Mutation p.V24L 0.84 deleterious(0.02) possibly_damaging(0.45) TCGA-78-7155-01 11 4470577 4470577 C T OR52K2 Missense_Mutation p.A3V 0.81 tolerated(0.57) benign(0.003) TCGA-78-7155-01 11 4510930 4510930 C T OR52K1 Missense_Mutation p.A267V 0.39 deleterious(0.01) benign(0.053) TCGA-78-7155-01 11 4566571 4566571 G T OR52M1 Missense_Mutation p.V51L 0.77 deleterious(0) benign(0.141) TCGA-78-7155-01 11 45957283 45957283 T C PHF21A Silent p.E563E 0.94 TCGA-78-7155-01 11 45992717 45992717 C A PHF21A Missense_Mutation p.G188W 0.88 deleterious(0.01) probably_damaging(0.938) TCGA-78-7155-01 11 46625147 46625147 T C HARBI1 Missense_Mutation p.H328R 0.79 tolerated(0.72) benign(0) TCGA-78-7155-01 11 47269242 47269242 G C ACP2 Missense_Mutation p.L83V 0.30 deleterious(0.03) probably_damaging(0.955) TCGA-78-7155-01 11 47364673 47364673 G A MYBPC3 Missense_Mutation p.A417V 1.00 tolerated(0.09) benign(0.099) TCGA-78-7155-01 11 47772725 47772725 T G FNBP4 Missense_Mutation p.Q252P 0.83 deleterious(0) probably_damaging(0.997) TCGA-78-7155-01 11 48238445 48238445 G T OR4B1 Silent p.V28V 0.84 TCGA-78-7155-01 11 4825714 4825714 A G OR52R1 5'Flank 0.81 TCGA-78-7155-01 11 48267347 48267347 C A OR4X2 Missense_Mutation p.T231N 0.84 deleterious(0) probably_damaging(1) TCGA-78-7155-01 11 4843542 4843542 G T OR51F2 Missense_Mutation p.K309N 0.36 deleterious(0.01) benign(0.403) TCGA-78-7155-01 11 49175458 49175458 T C FOLH1 Missense_Mutation p.K637R 0.18 tolerated(0.35) benign(0.001) TCGA-78-7155-01 11 49598110 49598110 G T RP11-707M1.1 RNA 0.36 TCGA-78-7155-01 11 49598375 49598375 C A RP11-707M1.1 RNA 0.46 TCGA-78-7155-01 11 51411670 51411670 G C OR4A5 Silent p.T242T 0.72 TCGA-78-7155-01 11 5289756 5289756 A T HBE1 Silent p.A129A 0.77 TCGA-78-7155-01 11 5322292 5322292 C A OR51B4 Missense_Mutation p.Q295H 0.89 tolerated(0.26) benign(0.209) TCGA-78-7155-01 11 5373621 5373621 A T OR51B6 Missense_Mutation p.K295M 0.90 deleterious(0) possibly_damaging(0.895) TCGA-78-7155-01 11 5475259 5475259 C G OR51I2 Missense_Mutation p.H181D 0.74 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 11 55032418 55032418 C G TRIM48 Silent p.L29L 0.25 TCGA-78-7155-01 11 55038145 55038145 G T TRIM48 3'UTR 0.27 TCGA-78-7155-01 11 55065005 55065005 C A TRIM51HP RNA 0.60 TCGA-78-7155-01 11 55322199 55322199 C G OR4C15 Silent p.L139L 0.27 TCGA-78-7155-01 11 55322684 55322684 T G OR4C15 Missense_Mutation p.I301S 0.26 deleterious_low_confidence(0) benign(0.44) TCGA-78-7155-01 11 55406660 55406660 T C OR4P4 Missense_Mutation p.I276T 0.14 deleterious(0) possibly_damaging(0.772) TCGA-78-7155-01 11 55653579 55653579 A T TRIM51 Intron 0.29 TCGA-78-7155-01 11 55735354 55735354 C A OR10AG1 Missense_Mutation p.V196L 0.47 tolerated(1) benign(0.005) TCGA-78-7155-01 11 55890462 55890462 C A OR8H3 Missense_Mutation p.S205Y 0.51 tolerated(0.68) benign(0.078) TCGA-78-7155-01 11 55904345 55904345 T C OR8J3 Missense_Mutation p.M284V 0.30 deleterious(0.01) possibly_damaging(0.491) TCGA-78-7155-01 11 56113743 56113744 CT A OR8K1 Frame_Shift_Del p.L77Mfs*12 0.24 TCGA-78-7155-01 11 56185423 56185423 C G OR5R1 Missense_Mutation p.A96P 0.21 tolerated(0.08) probably_damaging(0.999) TCGA-78-7155-01 11 56185700 56185700 T A OR5R1 Missense_Mutation p.E3D 0.29 tolerated(0.13) benign(0.001) TCGA-78-7155-01 11 56230457 56230457 G T OR5M9 Silent p.R141R 0.55 TCGA-78-7155-01 11 56258458 56258458 A T OR5M8 Missense_Mutation p.L130H 0.51 tolerated(0.35) benign(0.053) TCGA-78-7155-01 11 56409178 56409178 G A OR5AP2 Silent p.T246T 0.60 TCGA-78-7155-01 11 57310583 57310583 C A SMTNL1 Missense_Mutation p.D174E 0.50 tolerated(0.42) benign(0.018) TCGA-78-7155-01 11 57886019 57886019 C A OR9I1 Missense_Mutation p.A300S 0.26 tolerated(0.06) possibly_damaging(0.591) TCGA-78-7155-01 11 5809322 5809322 G T OR52N1 Missense_Mutation p.T242N 0.32 deleterious(0) probably_damaging(1) TCGA-78-7155-01 11 5809569 5809569 G T OR52N1 Missense_Mutation p.P160T 0.92 deleterious(0) probably_damaging(0.996) TCGA-78-7155-01 11 58126271 58126271 G T OR5B17 Missense_Mutation p.S91Y 0.67 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-78-7155-01 11 58170323 58170323 C A OR5B3 Missense_Mutation p.C187F 0.70 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-78-7155-01 11 58274827 58274827 G T OR5B21 Missense_Mutation p.T251K 0.28 deleterious_low_confidence(0) benign(0.419) TCGA-78-7155-01 11 58317280 58317280 C T LPXN Missense_Mutation p.G246R 0.44 deleterious(0) probably_damaging(0.993) TCGA-78-7155-01 11 58477209 58477209 C A GLYAT 3'UTR 0.45 TCGA-78-7155-01 11 58919341 58919341 C T FAM111A Missense_Mutation p.P67L 0.27 tolerated(0.27) benign(0.024) TCGA-78-7155-01 11 59271521 59271521 T A OR4D11 Missense_Mutation p.V158E 0.57 deleterious(0.01) probably_damaging(0.948) TCGA-78-7155-01 11 59480963 59480963 A C OR10V1 Missense_Mutation p.M119R 0.56 deleterious(0) probably_damaging(0.961) TCGA-78-7155-01 11 59480965 59480965 G T OR10V1 Silent p.V118V 0.57 TCGA-78-7155-01 11 60064772 60064772 G T MS4A4A Missense_Mutation p.G102W 0.60 tolerated(0.19) benign(0.328) TCGA-78-7155-01 11 6129388 6129388 A T OR56B4 Missense_Mutation p.D127V 0.82 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 11 61553285 61553285 G A MYRF Missense_Mutation p.R1105Q 0.30 tolerated(0.35) benign(0.004) TCGA-78-7155-01 11 62284959 62284959 C A AHNAK Missense_Mutation p.G5644W 0.33 possibly_damaging(0.814) TCGA-78-7155-01 11 64434732 64434732 A G NRXN2 Silent p.D596D 0.23 TCGA-78-7155-01 11 64525786 64525786 C A PYGM Missense_Mutation p.A154S 0.58 deleterious(0.02) possibly_damaging(0.733) TCGA-78-7155-01 11 64676542 64676542 G A ATG2A Missense_Mutation p.S762L 0.33 deleterious(0.01) benign(0.313) TCGA-78-7155-01 11 64695896 64695896 C T PPP2R5B Missense_Mutation p.R241W 0.56 deleterious(0.01) probably_damaging(0.995) TCGA-78-7155-01 11 64756939 64756939 C T BATF2 Missense_Mutation p.V163I 0.68 tolerated(0.22) benign(0.025) TCGA-78-7155-01 11 64938797 64938797 G T SPDYC Splice_Site p.X9_splice 0.30 TCGA-78-7155-01 11 65055292 65055292 G T POLA2 Missense_Mutation p.R371L 0.62 deleterious(0.02) benign(0.025) TCGA-78-7155-01 11 65308712 65308713 TG - LTBP3 Frame_Shift_Del p.T926Sfs*67 0.26 TCGA-78-7155-01 11 65387346 65387346 G T PCNXL3 Missense_Mutation p.A651S 0.35 tolerated(0.07) possibly_damaging(0.622) TCGA-78-7155-01 11 65391686 65391686 G C PCNXL3 Silent p.A855A 0.24 TCGA-78-7155-01 11 65826990 65826990 A G SF3B2 Missense_Mutation p.K442R 0.28 tolerated(0.19) benign(0.002) TCGA-78-7155-01 11 66062088 66062088 C A TMEM151A Missense_Mutation p.S124Y 0.27 tolerated(0.13) benign(0.346) TCGA-78-7155-01 11 66583618 66583619 TC - C11orf80 Frame_Shift_Del p.F430Cfs*81 0.52 TCGA-78-7155-01 11 67402313 67402313 G A TBX10 Silent p.F117F 0.31 TCGA-78-7155-01 11 67925397 67925397 G C SUV420H1 Missense_Mutation p.L806V 0.56 tolerated(0.29) benign(0.222) TCGA-78-7155-01 11 67925427 67925427 G A SUV420H1 Missense_Mutation p.H796Y 0.58 tolerated(0.06) benign(0.371) TCGA-78-7155-01 11 67925554 67925554 G A SUV420H1 Silent p.N753N 0.52 TCGA-78-7155-01 11 67925786 67925786 G A SUV420H1 Missense_Mutation p.S676L 0.58 deleterious(0.04) benign(0.06) TCGA-78-7155-01 11 67926066 67926066 G T SUV420H1 Missense_Mutation p.P583T 0.62 tolerated(0.09) benign(0.055) TCGA-78-7155-01 11 67926533 67926533 G C SUV420H1 Missense_Mutation p.S427C 0.57 deleterious(0.01) possibly_damaging(0.836) TCGA-78-7155-01 11 67926536 67926536 G A SUV420H1 Missense_Mutation p.S426L 0.56 deleterious(0.02) benign(0.1) TCGA-78-7155-01 11 6816919 6816919 A T OR6A2 Missense_Mutation p.S7R 0.28 tolerated(0.15) benign(0.002) TCGA-78-7155-01 11 69063426 69063426 G T MYEOV Missense_Mutation p.R170I 0.27 tolerated_low_confidence(0.09) benign(0.044) TCGA-78-7155-01 11 70171001 70171001 C G PPFIA1 Missense_Mutation p.L139V 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-78-7155-01 11 71717101 71717107 ACCCCGG - NUMA1 Frame_Shift_Del p.A1889Gfs*44 0.42 TCGA-78-7155-01 11 72533520 72533520 A T ATG16L2 Intron 0.51 TCGA-78-7155-01 11 73071371 73071371 G T ARHGEF17 Missense_Mutation p.D1405Y 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-78-7155-01 11 74413894 74413894 G T CHRDL2 Silent p.A355A 0.47 TCGA-78-7155-01 11 75298606 75298606 G A MAP6 Missense_Mutation p.P647L 0.61 tolerated_low_confidence(0.71) benign(0) TCGA-78-7155-01 11 76370582 76370582 G A LRRC32 3'UTR 0.64 TCGA-78-7155-01 11 76751762 76751762 G - B3GNT6 3'UTR 0.33 TCGA-78-7155-01 11 76814343 76814343 A G OMP Missense_Mutation p.N153S 0.59 tolerated_low_confidence(0.22) benign(0.005) TCGA-78-7155-01 11 7712603 7712603 G T OVCH2 Silent p.T512T 0.73 TCGA-78-7155-01 11 78383237 78383237 G T TENM4 Missense_Mutation p.S1878R 0.27 deleterious(0) probably_damaging(0.961) TCGA-78-7155-01 11 7982249 7982249 G T NLRP10 Missense_Mutation p.L304M 0.81 deleterious(0) probably_damaging(0.998) TCGA-78-7155-01 11 82443440 82443440 G T FAM181B 3'UTR 0.17 TCGA-78-7155-01 11 85375242 85375244 CTT - CREBZF In_Frame_Del p.K226del 0.22 TCGA-78-7155-01 11 85438967 85438967 T A SYTL2 5'Flank 0.25 TCGA-78-7155-01 11 86126174 86126174 G T CCDC81 Missense_Mutation p.D504Y 0.61 deleterious(0) probably_damaging(0.986) TCGA-78-7155-01 11 88300288 88300288 C T GRM5 Missense_Mutation p.A855T 0.28 tolerated(0.35) possibly_damaging(0.691) TCGA-78-7155-01 11 89431656 89431656 T C FOLH1B RNA 0.60 TCGA-78-7155-01 11 92086518 92086518 G T FAT3 Missense_Mutation p.G414C 0.18 possibly_damaging(0.469) TCGA-78-7155-01 11 94602374 94602374 G C AMOTL1 Missense_Mutation p.G834R 0.26 deleterious(0.04) probably_damaging(1) TCGA-78-7155-01 11 9749606 9749606 A G SWAP70 Missense_Mutation p.M217V 0.96 deleterious(0.05) possibly_damaging(0.613) TCGA-78-7155-01 11 99827598 99827598 G T CNTN5 Missense_Mutation p.R245L 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-78-7155-01 12 101295615 101295615 C A ANO4 Missense_Mutation p.P18T 0.40 tolerated_low_confidence(0.12) benign(0.002) TCGA-78-7155-01 12 101480565 101480565 T A ANO4 Missense_Mutation p.V520E 0.85 deleterious(0.03) probably_damaging(0.984) TCGA-78-7155-01 12 102023252 102023252 C A MYBPC1 Silent p.A48A 0.83 TCGA-78-7155-01 12 104129323 104129323 G T STAB2 Nonsense_Mutation p.E1839* 0.67 TCGA-78-7155-01 12 107090223 107090223 A T RFX4 Missense_Mutation p.S287C 0.85 deleterious(0) probably_damaging(0.997) TCGA-78-7155-01 12 109577742 109577742 G T ACACB Missense_Mutation p.D178Y 0.73 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-78-7155-01 12 114823344 114823344 G T TBX5 Missense_Mutation p.P231H 0.67 deleterious(0) probably_damaging(1) TCGA-78-7155-01 12 121790164 121790164 C A ANAPC5 5'UTR 0.71 TCGA-78-7155-01 12 122188331 122188331 C T TMEM120B Silent p.L117L 0.88 TCGA-78-7155-01 12 122413223 122413223 G A WDR66 Missense_Mutation p.E949K 0.49 deleterious(0.03) benign(0.411) TCGA-78-7155-01 12 124118211 124118211 C G EIF2B1 5'UTR 0.95 TCGA-78-7155-01 12 1291232 1291232 G T ERC1 Splice_Site p.X672_splice 0.79 TCGA-78-7155-01 12 130647776 130647776 G C FZD10 Missense_Mutation p.E97Q 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-78-7155-01 12 130856202 130856202 C T PIWIL1 3'UTR 0.77 TCGA-78-7155-01 12 132195869 132195869 G A SFSWAP Missense_Mutation p.R32Q 0.32 tolerated_low_confidence(0.08) probably_damaging(0.988) TCGA-78-7155-01 12 13256453 13256453 T C GSG1 5'UTR 0.35 TCGA-78-7155-01 12 14809552 14809552 C G GUCY2C Splice_Site p.X455_splice 0.85 TCGA-78-7155-01 12 15370383 15370383 C A RERG Missense_Mutation p.R14I 0.78 tolerated(0.08) benign(0.189) TCGA-78-7155-01 12 15777257 15777257 T C EPS8 Missense_Mutation p.H710R 0.75 tolerated(1) benign(0.031) TCGA-78-7155-01 12 20769266 20769266 G T PDE3A Missense_Mutation p.V458L 0.50 tolerated(0.29) benign(0.225) TCGA-78-7155-01 12 21051426 21051426 G A SLCO1B3 Missense_Mutation p.R580K 0.41 deleterious(0) probably_damaging(1) TCGA-78-7155-01 12 21229434 21229434 G T SLCO1B7 Missense_Mutation p.C552F 0.57 deleterious(0) probably_damaging(1) TCGA-78-7155-01 12 21392175 21392175 G C SLCO1B1 3'UTR 0.61 TCGA-78-7155-01 12 26383870 26383870 A T SSPN Missense_Mutation p.Q198L 0.29 deleterious(0) probably_damaging(0.991) TCGA-78-7155-01 12 27908112 27908112 A G MRPS35 Splice_Site p.X235_splice 0.15 TCGA-78-7155-01 12 29670436 29670436 C A TMTC1 Missense_Mutation p.R698L 0.28 deleterious(0) probably_damaging(0.99) TCGA-78-7155-01 12 29904703 29904703 C A TMTC1 Silent p.R278R 0.29 TCGA-78-7155-01 12 29904704 29904704 C G TMTC1 Missense_Mutation p.R278P 0.29 tolerated(0.11) benign(0.007) TCGA-78-7155-01 12 33003763 33003763 C T PKP2 Missense_Mutation p.V439I 0.61 tolerated(1) benign(0.002) TCGA-78-7155-01 12 33559808 33559808 C A SYT10 Silent p.G331G 0.47 TCGA-78-7155-01 12 41831786 41831786 C A PDZRN4 Intron 0.77 TCGA-78-7155-01 12 419077 419077 C T KDM5A Silent p.R1090R 0.82 TCGA-78-7155-01 12 42853934 42853934 T C PRICKLE1 Missense_Mutation p.I725V 0.38 tolerated(0.52) benign(0) TCGA-78-7155-01 12 43771274 43771274 C G ADAMTS20 Missense_Mutation p.R1630P 0.62 tolerated(0.27) benign(0.327) TCGA-78-7155-01 12 43822270 43822270 G T ADAMTS20 Missense_Mutation p.P1240Q 0.76 tolerated(0.61) benign(0.02) TCGA-78-7155-01 12 45173785 45173785 C A NELL2 Missense_Mutation p.S169I 0.71 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 12 45269639 45269639 A T NELL2 Missense_Mutation p.V55D 0.67 deleterious_low_confidence(0.01) benign(0.017) TCGA-78-7155-01 12 47630123 47630123 A G PCED1B Missense_Mutation p.N426S 0.73 tolerated_low_confidence(0.32) benign(0.013) TCGA-78-7155-01 12 48386700 48386700 C A COL2A1 Silent p.L328L 0.26 TCGA-78-7155-01 12 49361986 49361986 C G WNT10B Missense_Mutation p.G152R 0.80 tolerated(0.15) benign(0.002) TCGA-78-7155-01 12 50189365 50189365 G A NCKAP5L Missense_Mutation p.R760W 0.92 deleterious(0) probably_damaging(0.997) TCGA-78-7155-01 12 50344880 50344880 C A AQP2 Nonsense_Mutation p.Y89* 0.81 TCGA-78-7155-01 12 50822840 50822840 G T LARP4 Nonsense_Mutation p.E97* 0.84 TCGA-78-7155-01 12 5153658 5153658 G T KCNA5 Silent p.A115A 0.65 TCGA-78-7155-01 12 52200380 52200380 T A SCN8A Missense_Mutation p.S1704T 0.82 deleterious(0) probably_damaging(0.998) TCGA-78-7155-01 12 52284445 52284445 A C ANKRD33 Missense_Mutation p.T239P 0.29 deleterious(0) probably_damaging(0.938) TCGA-78-7155-01 12 52385742 52385742 C G ACVR1B Missense_Mutation p.R494G 0.83 deleterious(0) benign(0.429) TCGA-78-7155-01 12 53777109 53777109 G T SP1 Nonsense_Mutation p.G460* 0.28 TCGA-78-7155-01 12 56117674 56117674 G A RDH5 Missense_Mutation p.D192N 0.80 tolerated(0.13) possibly_damaging(0.811) TCGA-78-7155-01 12 56348026 56348026 C T PMEL Missense_Mutation p.S660N 0.87 deleterious(0.01) possibly_damaging(0.627) TCGA-78-7155-01 12 6121286 6121286 C T VWF Silent p.R1877R 0.79 TCGA-78-7155-01 12 63225978 63225978 G T PPM1H Silent p.A109A 0.42 TCGA-78-7155-01 12 63544072 63544072 C T AVPR1A Missense_Mutation p.S182N 0.91 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 12 63954414 63954414 C A DPY19L2 Missense_Mutation p.D719Y 0.85 deleterious(0) probably_damaging(1) TCGA-78-7155-01 12 68710012 68710012 C G MDM1 Missense_Mutation p.A343P 0.89 deleterious(0) probably_damaging(1) TCGA-78-7155-01 12 6936231 6936231 T G GPR162 Silent p.P543P 0.82 TCGA-78-7155-01 12 6965198 6965198 G T USP5 Missense_Mutation p.D108Y 0.80 deleterious(0) possibly_damaging(0.806) TCGA-78-7155-01 12 75444566 75444566 C A KCNC2 Nonsense_Mutation p.G407* 0.81 TCGA-78-7155-01 12 75601353 75601353 C A KCNC2 Missense_Mutation p.E137D 0.76 deleterious(0) probably_damaging(0.963) TCGA-78-7155-01 12 78362454 78362454 G T NAV3 Missense_Mutation p.A215S 1.00 tolerated(0.92) benign(0.004) TCGA-78-7155-01 12 82871108 82871108 C T METTL25 Nonsense_Mutation p.R566* 0.32 TCGA-78-7155-01 12 88391905 88391905 G A C12orf50 Silent p.L66L 0.79 TCGA-78-7155-01 12 91348364 91348364 G T CCER1 Missense_Mutation p.H52Q 0.35 tolerated(0.36) possibly_damaging(0.767) TCGA-78-7155-01 12 95451334 95451334 C G NR2C1 Missense_Mutation p.D260H 0.79 deleterious(0.01) benign(0.422) TCGA-78-7155-01 12 98849660 98849660 C A SLC9A7P1 RNA 0.36 TCGA-78-7155-01 12 98849661 98849661 C T SLC9A7P1 RNA 0.37 TCGA-78-7155-01 12 98849689 98849689 G A SLC9A7P1 RNA 0.36 TCGA-78-7155-01 13 103450906 103450906 G T KDELC1 Missense_Mutation p.L39I 0.67 deleterious(0) possibly_damaging(0.631) TCGA-78-7155-01 13 103514619 103514619 G T BIVM-ERCC5 Missense_Mutation p.A800S 0.60 tolerated_low_confidence(0.62) benign(0.041) TCGA-78-7155-01 13 108518057 108518057 C A FAM155A Silent p.S296S 0.53 TCGA-78-7155-01 13 109777616 109777616 G T MYO16 Missense_Mutation p.R1209L 0.38 deleterious(0) probably_damaging(0.932) TCGA-78-7155-01 13 113536350 113536350 C G ATP11A 3'UTR 0.31 TCGA-78-7155-01 13 114202690 114202690 G T TMCO3 Missense_Mutation p.A615S 0.59 tolerated(0.21) possibly_damaging(0.679) TCGA-78-7155-01 13 20038657 20038657 C A TPTE2 Missense_Mutation p.R227L 0.68 deleterious(0) possibly_damaging(0.619) TCGA-78-7155-01 13 20716932 20716932 C A GJA3 Missense_Mutation p.G166C 0.64 deleterious(0) probably_damaging(1) TCGA-78-7155-01 13 23905743 23905743 G C SACS Nonsense_Mutation p.S4091* 0.88 TCGA-78-7155-01 13 25274899 25274899 T C ATP12A Missense_Mutation p.Y580H 0.63 tolerated(0.47) probably_damaging(0.992) TCGA-78-7155-01 13 25480995 25480995 T A CENPJ Missense_Mutation p.K394I 0.76 deleterious(0.03) benign(0.055) TCGA-78-7155-01 13 25744644 25744644 G T AMER2 Missense_Mutation p.L372M 0.79 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 13 28835536 28835536 A G PAN3 Splice_Site p.X452_splice 0.73 TCGA-78-7155-01 13 31724221 31724221 C A HSPH1 Missense_Mutation p.S336I 0.58 tolerated(0.05) possibly_damaging(0.649) TCGA-78-7155-01 13 32356837 32356837 T C RXFP2 Silent p.G294G 0.71 TCGA-78-7155-01 13 32802711 32802711 G T FRY Missense_Mutation p.M1775I 0.74 tolerated(0.62) benign(0.001) TCGA-78-7155-01 13 33344486 33344486 G T PDS5B Silent p.P1284P 0.86 TCGA-78-7155-01 13 38153997 38153997 C A POSTN Splice_Site p.X554_splice 0.71 TCGA-78-7155-01 13 38161012 38161012 A T POSTN Missense_Mutation p.N220K 0.67 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 13 40293944 40293944 C A COG6 Missense_Mutation p.L522M 0.73 deleterious(0) probably_damaging(0.998) TCGA-78-7155-01 13 42393467 42393467 C A VWA8 Missense_Mutation p.V586F 0.67 deleterious(0.02) possibly_damaging(0.615) TCGA-78-7155-01 13 49906179 49906179 T A CAB39L Silent p.T246T 0.54 TCGA-78-7155-01 13 50108290 50108290 T G RCBTB1 Missense_Mutation p.K522Q 0.29 deleterious(0.03) benign(0.213) TCGA-78-7155-01 13 52351249 52351249 T C DHRS12 Missense_Mutation p.I153V 0.54 tolerated(0.39) benign(0.007) TCGA-78-7155-01 13 53616220 53616220 G T OLFM4 Missense_Mutation p.G178V 0.50 tolerated(0.41) benign(0) TCGA-78-7155-01 13 58208476 58208476 G C PCDH17 Missense_Mutation p.R599P 0.74 deleterious(0) probably_damaging(0.998) TCGA-78-7155-01 13 60590082 60590082 C A DIAPH3 Missense_Mutation p.V246F 0.85 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 13 61986284 61986284 C T PCDH20 Missense_Mutation p.E650K 0.69 deleterious(0) probably_damaging(1) TCGA-78-7155-01 13 67801400 67801400 C A PCDH9 Missense_Mutation p.K391N 0.53 deleterious(0) possibly_damaging(0.891) TCGA-78-7155-01 13 67801402 67801402 T A PCDH9 Nonsense_Mutation p.K391* 0.54 TCGA-78-7155-01 13 72440789 72440789 G T DACH1 Missense_Mutation p.P40Q 0.36 unknown(0) TCGA-78-7155-01 13 77569290 77569290 A G CLN5 Missense_Mutation p.D138G 0.29 deleterious(0.01) benign(0.013) TCGA-78-7155-01 13 84453925 84453925 G T SLITRK1 Missense_Mutation p.S573Y 0.64 deleterious(0.01) benign(0.28) TCGA-78-7155-01 13 84455557 84455557 C G SLITRK1 Missense_Mutation p.C29S 0.40 deleterious(0) probably_damaging(0.993) TCGA-78-7155-01 13 88328109 88328109 G A SLITRK5 Missense_Mutation p.E156K 0.26 deleterious(0.01) probably_damaging(0.951) TCGA-78-7155-01 13 88330362 88330362 G T SLITRK5 Missense_Mutation p.G907W 0.18 deleterious(0.01) probably_damaging(0.94) TCGA-78-7155-01 13 95120999 95120999 C A DCT Splice_Site p.X199_splice 0.58 TCGA-78-7155-01 13 97639385 97639385 G T OXGR1 Missense_Mutation p.P210H 0.45 deleterious(0.02) probably_damaging(1) TCGA-78-7155-01 13 97639386 97639386 G T OXGR1 Missense_Mutation p.P210T 0.45 deleterious(0) probably_damaging(1) TCGA-78-7155-01 13 99361875 99361875 A T SLC15A1 Missense_Mutation p.F340I 0.53 deleterious(0.01) benign(0.363) TCGA-78-7155-01 14 102469237 102469237 C A DYNC1H1 Missense_Mutation p.D1606E 0.55 benign(0.312) TCGA-78-7155-01 14 103405971 103405971 C A CDC42BPB Missense_Mutation p.M1601I 0.65 tolerated(1) benign(0.027) TCGA-78-7155-01 14 105353375 105353377 GGA TAC CEP170B Missense_Mutation p.D934T 0.54 TCGA-78-7155-01 14 105353403 105353403 C T CEP170B Missense_Mutation p.P943S 0.57 tolerated(0.22) benign(0.079) TCGA-78-7155-01 14 105945464 105945464 G A CRIP2 Missense_Mutation p.E211K 0.75 deleterious(0) possibly_damaging(0.655) TCGA-78-7155-01 14 106866561 106866561 C G IGHV3-38 Missense_Mutation p.E65Q 0.61 tolerated_low_confidence(0.16) possibly_damaging(0.57) TCGA-78-7155-01 14 106967175 106967175 A G IGHV1-46 Silent p.G75G 0.70 TCGA-78-7155-01 14 20215914 20215914 G T OR4Q3 Missense_Mutation p.A110S 0.08 tolerated(0.14) benign(0.166) TCGA-78-7155-01 14 20248716 20248716 C G OR4M1 Missense_Mutation p.P79A 0.18 deleterious(0) possibly_damaging(0.847) TCGA-78-7155-01 14 20344691 20344691 C A OR4K2 Missense_Mutation p.H89N 0.51 tolerated(0.21) benign(0.003) TCGA-78-7155-01 14 20388871 20388871 A G OR4K5 Missense_Mutation p.T36A 0.17 tolerated(0.12) benign(0.001) TCGA-78-7155-01 14 20502265 20502265 T A OR4K13 Missense_Mutation p.Y218F 0.84 deleterious(0) probably_damaging(1) TCGA-78-7155-01 14 20502266 20502266 A T OR4K13 Missense_Mutation p.Y218N 0.84 deleterious(0) probably_damaging(1) TCGA-78-7155-01 14 20528666 20528666 C A OR4L1 Missense_Mutation p.H155N 0.86 deleterious(0) probably_damaging(1) TCGA-78-7155-01 14 20692206 20692206 C A OR11H6 Missense_Mutation p.S113Y 0.88 tolerated(0.12) benign(0.019) TCGA-78-7155-01 14 20940629 20940629 A T PNP Silent p.R58R 0.41 TCGA-78-7155-01 14 21863490 21863490 C A CHD8 Missense_Mutation p.D1717Y 0.29 deleterious(0) possibly_damaging(0.823) TCGA-78-7155-01 14 23588155 23588155 C A CEBPE Missense_Mutation p.G49V 0.83 tolerated(0.24) probably_damaging(0.998) TCGA-78-7155-01 14 24662025 24662025 C T TM9SF1 Missense_Mutation p.A266T 0.46 tolerated(0.45) benign(0.159) TCGA-78-7155-01 14 24662418 24662418 C T TM9SF1 Missense_Mutation p.D135N 0.52 deleterious(0.02) possibly_damaging(0.654) TCGA-78-7155-01 14 24664018 24664018 C T TM9SF1 Missense_Mutation p.E70K 0.55 tolerated(0.23) benign(0.013) TCGA-78-7155-01 14 24707648 24707648 G C GMPR2 Intron 0.89 TCGA-78-7155-01 14 25042994 25042994 A T CTSG Missense_Mutation p.L206Q 0.79 deleterious(0) probably_damaging(0.956) TCGA-78-7155-01 14 25043928 25043928 G T CTSG Missense_Mutation p.P98T 0.88 deleterious(0) probably_damaging(1) TCGA-78-7155-01 14 26917170 26917170 C A NOVA1 Missense_Mutation p.G507C 0.71 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-78-7155-01 14 29237673 29237673 C T FOXG1 Silent p.C396C 0.86 TCGA-78-7155-01 14 29237796 29237796 G T FOXG1 Missense_Mutation p.R437S 0.84 tolerated_low_confidence(0.3) benign(0.001) TCGA-78-7155-01 14 31066643 31066643 G T G2E3 Silent p.A182A 0.28 TCGA-78-7155-01 14 31371816 31371816 A C STRN3 Missense_Mutation p.V688G 0.41 deleterious(0) probably_damaging(0.994) TCGA-78-7155-01 14 31583534 31583534 T A HECTD1 Missense_Mutation p.R1877S 0.46 tolerated(0.11) probably_damaging(0.916) TCGA-78-7155-01 14 33292940 33292940 G T AKAP6 Missense_Mutation p.S1974I 0.44 deleterious(0.03) benign(0.101) TCGA-78-7155-01 14 36841088 36841088 T C DPPA3P2 RNA 0.19 TCGA-78-7155-01 14 39716860 39716860 A - MIA2 Frame_Shift_Del p.D364Tfs*8 0.62 TCGA-78-7155-01 14 50778849 50778849 T C L2HGDH Missense_Mutation p.Y7C 0.61 deleterious_low_confidence(0) benign(0.237) TCGA-78-7155-01 14 51475904 51475904 C A TRIM9 Missense_Mutation p.W400C 0.32 deleterious(0) probably_damaging(0.96) TCGA-78-7155-01 14 52417474 52417474 C A GNG2 Missense_Mutation p.D26E 0.30 tolerated(1) benign(0.052) TCGA-78-7155-01 14 52734481 52734481 G C PTGDR 5'UTR 0.24 TCGA-78-7155-01 14 54416818 54416818 C T BMP4 Missense_Mutation p.D387N 0.43 deleterious(0.05) possibly_damaging(0.889) TCGA-78-7155-01 14 55625362 55625362 C G DLGAP5 Missense_Mutation p.R584T 0.52 deleterious(0) possibly_damaging(0.875) TCGA-78-7155-01 14 55818810 55818810 C G FBXO34 Missense_Mutation p.L568V 0.35 deleterious(0) probably_damaging(0.997) TCGA-78-7155-01 14 55848823 55848823 T G ATG14 Missense_Mutation p.Y245S 0.16 deleterious(0) probably_damaging(0.996) TCGA-78-7155-01 14 55848839 55848839 C A ATG14 Missense_Mutation p.A240S 0.54 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 14 56757024 56757024 G T PELI2 Missense_Mutation p.M182I 0.28 tolerated(0.56) benign(0.403) TCGA-78-7155-01 14 57268602 57268602 G T OTX2 Missense_Mutation p.Q249K 0.31 tolerated(0.06) benign(0.071) TCGA-78-7155-01 14 59797982 59797982 C T DAAM1 Missense_Mutation p.P539L 0.13 tolerated(0.56) unknown(0) TCGA-78-7155-01 14 61113065 61113065 T C SIX1 Missense_Mutation p.Q264R 0.10 tolerated_low_confidence(0.12) benign(0.017) TCGA-78-7155-01 14 61512097 61512097 T G SLC38A6 Missense_Mutation p.F260V 0.09 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 14 63175062 63175062 G T KCNH5 Missense_Mutation p.Q711K 0.31 tolerated(0.06) probably_damaging(0.952) TCGA-78-7155-01 14 63416986 63416986 C T KCNH5 Missense_Mutation p.G412R 0.56 deleterious(0) probably_damaging(1) TCGA-78-7155-01 14 64467393 64467393 A T SYNE2 Silent p.T1198T 0.49 TCGA-78-7155-01 14 64954030 64954030 G A ZBTB25 Nonsense_Mutation p.Q307* 0.37 TCGA-78-7155-01 14 68251091 68251091 C A ZFYVE26 Missense_Mutation p.V1196L 0.25 tolerated(1) benign(0.022) TCGA-78-7155-01 14 70712480 70712480 A T ADAM21P1 RNA 0.50 TCGA-78-7155-01 14 70926479 70926479 T G ADAM21 3'UTR 0.55 TCGA-78-7155-01 14 72152348 72152348 G C SIPA1L1 Missense_Mutation p.R1125P 0.19 tolerated(0.18) benign(0.415) TCGA-78-7155-01 14 72431520 72431520 A T RGS6 Silent p.G4G 0.53 TCGA-78-7155-01 14 72961950 72961950 T A RGS6 Silent p.A315A 0.32 TCGA-78-7155-01 14 72961952 72961952 T G RGS6 Missense_Mutation p.L316W 0.30 deleterious(0) possibly_damaging(0.886) TCGA-78-7155-01 14 73408452 73408452 G C DCAF4 Splice_Site p.X118_splice 0.26 TCGA-78-7155-01 14 74541699 74541699 T A ALDH6A1 Missense_Mutation p.S24C 0.55 tolerated(0.11) benign(0.039) TCGA-78-7155-01 14 75078231 75078231 C A LTBP2 Silent p.A139A 0.47 TCGA-78-7155-01 14 77294790 77294790 G A C14orf166B Intron 0.39 TCGA-78-7155-01 14 79117513 79117513 A G NRXN3 5'UTR 0.23 TCGA-78-7155-01 14 79432645 79432645 C A NRXN3 Silent p.T518T 0.57 TCGA-78-7155-01 14 79454368 79454368 C A NRXN3 Missense_Mutation p.P676H 0.52 deleterious(0) benign(0.001) TCGA-78-7155-01 14 88729877 88729877 G T KCNK10 Missense_Mutation p.A24E 0.39 tolerated_low_confidence(0.2) benign(0.017) TCGA-78-7155-01 14 90755006 90755006 T A NRDE2 Missense_Mutation p.S905C 0.53 deleterious(0.03) possibly_damaging(0.765) TCGA-78-7155-01 14 91044511 91044511 C A TTC7B Missense_Mutation p.R750L 0.38 deleterious(0.04) benign(0.038) TCGA-78-7155-01 14 91810001 91810001 C A CCDC88C Missense_Mutation p.G114V 0.39 tolerated(0.06) probably_damaging(0.987) TCGA-78-7155-01 14 92471709 92471709 G A TRIP11 Nonsense_Mutation p.R871* 0.43 TCGA-78-7155-01 14 92792257 92792257 G T SLC24A4 Missense_Mutation p.W59L 0.60 tolerated_low_confidence(0.1) benign(0.009) TCGA-78-7155-01 14 94044382 94044382 C T UNC79 Silent p.I625I 0.38 TCGA-78-7155-01 14 94046646 94046646 A T UNC79 Missense_Mutation p.Q685L 0.42 deleterious(0) probably_damaging(0.99) TCGA-78-7155-01 14 94088153 94088153 G T UNC79 Missense_Mutation p.R1348L 0.36 deleterious_low_confidence(0) benign(0.427) TCGA-78-7155-01 14 94120157 94120157 C A UNC79 Silent p.A1913A 0.45 TCGA-78-7155-01 14 94149022 94149022 G A UNC79 Missense_Mutation p.M2129I 0.34 tolerated(0.35) possibly_damaging(0.85) TCGA-78-7155-01 14 94152940 94152940 G T UNC79 Missense_Mutation p.C2143F 0.28 deleterious(0.03) benign(0.35) TCGA-78-7155-01 14 94391612 94391612 G T FAM181A 5'UTR 0.26 TCGA-78-7155-01 14 94401024 94401024 A T ASB2 Missense_Mutation p.L629Q 0.38 deleterious(0) probably_damaging(1) TCGA-78-7155-01 14 94756523 94756523 G T SERPINA10 Silent p.T136T 0.53 TCGA-78-7155-01 14 94756952 94756952 G T SERPINA10 5'UTR 0.34 TCGA-78-7155-01 14 95030432 95030432 G T SERPINA4 Missense_Mutation p.V205F 0.29 deleterious(0.01) possibly_damaging(0.669) TCGA-78-7155-01 14 95108049 95108049 G T SERPINA13P RNA 0.39 TCGA-78-7155-01 14 95584026 95584026 C A DICER1 Missense_Mutation p.G481V 0.42 tolerated(0.14) probably_damaging(0.999) TCGA-78-7155-01 14 95922041 95922041 G A SYNE3 Silent p.P270P 0.39 TCGA-78-7155-01 14 95942072 95942072 G T SYNE3 Silent p.V29V 0.21 TCGA-78-7155-01 14 96135931 96135931 G A TCL6 RNA 0.36 TCGA-78-7155-01 14 96769497 96769497 C A ATG2B Missense_Mutation p.Q1646H 0.40 deleterious(0) probably_damaging(0.979) TCGA-78-7155-01 14 99640777 99640777 T A BCL11B Missense_Mutation p.E799V 0.24 deleterious(0) benign(0.006) TCGA-78-7155-01 15 100331837 100331837 G T AC090825.1 5'Flank 0.78 TCGA-78-7155-01 15 20645832 20645832 G A HERC2P3 RNA 0.17 TCGA-78-7155-01 15 22383042 22383042 C A OR4N4 Silent p.T190T 0.40 TCGA-78-7155-01 15 22473048 22473048 C A IGHV4OR15-8 Missense_Mutation p.G75W 0.35 deleterious(0.01) possibly_damaging(0.692) TCGA-78-7155-01 15 24921679 24921679 G T NPAP1 Missense_Mutation p.S222I 0.56 tolerated(0.18) benign(0.063) TCGA-78-7155-01 15 24923130 24923130 T A NPAP1 Missense_Mutation p.S706T 0.29 tolerated(0.61) possibly_damaging(0.877) TCGA-78-7155-01 15 24923596 24923596 T A NPAP1 Missense_Mutation p.L861Q 0.43 tolerated(0.19) possibly_damaging(0.651) TCGA-78-7155-01 15 24923752 24923752 C G NPAP1 Missense_Mutation p.S913C 0.54 deleterious(0.02) probably_damaging(0.993) TCGA-78-7155-01 15 25327820 25327820 G - SNORD116-18 5'Flank 0.48 TCGA-78-7155-01 15 25458649 25458649 G T SNORD115-22 3'Flank 0.25 TCGA-78-7155-01 15 25472145 25472146 GC - SNORD115-33 5'Flank 0.32 TCGA-78-7155-01 15 25477432 25477432 G T SNORD115-33 3'Flank 0.23 TCGA-78-7155-01 15 27778052 27778052 G T GABRG3 3'UTR 0.21 TCGA-78-7155-01 15 28380792 28380792 C A HERC2 Missense_Mutation p.G4021V 0.40 probably_damaging(0.998) TCGA-78-7155-01 15 28391471 28391471 T A HERC2 Silent p.V3640V 0.38 TCGA-78-7155-01 15 28413635 28413635 C A HERC2 Missense_Mutation p.S3444I 0.37 benign(0.002) TCGA-78-7155-01 15 28465739 28465739 C A HERC2 Nonsense_Mutation p.G1902* 0.33 TCGA-78-7155-01 15 28510997 28510997 G A HERC2 Silent p.T574T 0.36 TCGA-78-7155-01 15 29346822 29346822 C T APBA2 Silent p.A245A 0.60 TCGA-78-7155-01 15 29346929 29346929 C A APBA2 Missense_Mutation p.P281H 0.62 deleterious_low_confidence(0.04) probably_damaging(0.993) TCGA-78-7155-01 15 29406125 29406125 G T APBA2 Missense_Mutation p.R695L 0.19 deleterious(0) possibly_damaging(0.511) TCGA-78-7155-01 15 31294182 31294182 C G TRPM1 Missense_Mutation p.S1591T 0.83 deleterious_low_confidence(0.01) probably_damaging(0.937) TCGA-78-7155-01 15 33822819 33822819 C A RYR3 Silent p.T102T 0.56 TCGA-78-7155-01 15 34105127 34105127 C T RYR3 Missense_Mutation p.P3441S 0.90 benign(0.018) TCGA-78-7155-01 15 35224619 35224619 C A AQR Missense_Mutation p.R267M 0.41 deleterious(0) probably_damaging(1) TCGA-78-7155-01 15 37001480 37001480 G T C15orf41 Missense_Mutation p.V201L 0.82 tolerated(0.08) possibly_damaging(0.448) TCGA-78-7155-01 15 37110119 37110119 G T CSNK1A1P1 RNA 0.78 TCGA-78-7155-01 15 40675071 40675071 T G KNSTRN Missense_Mutation p.V12G 0.80 tolerated_low_confidence(0.17) benign(0.003) TCGA-78-7155-01 15 40675205 40675205 G T KNSTRN Nonsense_Mutation p.E57* 0.71 TCGA-78-7155-01 15 41228552 41228552 A G DLL4 Missense_Mutation p.H456R 1.00 tolerated(0.45) benign(0.003) TCGA-78-7155-01 15 43017718 43017718 A G CDAN1 Missense_Mutation p.V1140A 0.88 deleterious(0.04) benign(0.075) TCGA-78-7155-01 15 43028533 43028533 G A CDAN1 Missense_Mutation p.P179L 0.76 deleterious(0) probably_damaging(0.994) TCGA-78-7155-01 15 43939616 43939616 C A CATSPER2 Silent p.V65V 0.84 TCGA-78-7155-01 15 45028906 45028906 G C TRIM69 Missense_Mutation p.E2Q 0.79 deleterious_low_confidence(0.03) benign(0.007) TCGA-78-7155-01 15 50905990 50905990 G A TRPM7 Missense_Mutation p.H562Y 0.29 tolerated(0.91) benign(0.05) TCGA-78-7155-01 15 51040893 51040894 TG - SPPL2A Frame_Shift_Del p.N117Kfs*9 0.42 TCGA-78-7155-01 15 52420406 52420406 G A GNB5 Missense_Mutation p.S300L 0.68 deleterious(0) probably_damaging(0.911) TCGA-78-7155-01 15 54306850 54306850 C A UNC13C Silent p.R584R 0.71 TCGA-78-7155-01 15 56387748 56387748 T C RFX7 Missense_Mutation p.I726M 0.63 tolerated_low_confidence(0.16) benign(0.007) TCGA-78-7155-01 15 58247262 58247262 G T ALDH1A2 3'UTR 0.50 TCGA-78-7155-01 15 59102480 59102480 G A FAM63B Missense_Mutation p.V339I 0.58 tolerated(0.07) probably_damaging(0.998) TCGA-78-7155-01 15 60297159 60297159 G T FOXB1 5'UTR 0.91 TCGA-78-7155-01 15 63862705 63862705 G - USP3 Frame_Shift_Del p.G279Vfs*25 0.30 TCGA-78-7155-01 15 74315359 74315359 G T PML Missense_Mutation p.V265F 0.78 deleterious(0.01) possibly_damaging(0.873) TCGA-78-7155-01 15 74426880 74426880 A T ISLR2 Silent p.A595A 0.81 TCGA-78-7155-01 15 75013133 75013133 C G CYP1A1 Intron 0.38 TCGA-78-7155-01 15 75977804 75977804 G T CSPG4 Missense_Mutation p.P1343H 0.76 deleterious(0.01) possibly_damaging(0.687) TCGA-78-7155-01 15 81578048 81578048 C A IL16 Missense_Mutation p.D403E 0.71 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 15 83926531 83926531 C A BNC1 Missense_Mutation p.G883V 0.80 deleterious(0.01) possibly_damaging(0.894) TCGA-78-7155-01 15 84611740 84611740 C A ADAMTSL3 Nonsense_Mutation p.S799* 0.50 TCGA-78-7155-01 15 84639249 84639249 G T ADAMTSL3 Missense_Mutation p.C835F 0.80 deleterious(0) probably_damaging(1) TCGA-78-7155-01 15 86686992 86686992 C A AGBL1 Missense_Mutation p.L14M 0.88 deleterious(0) probably_damaging(0.973) TCGA-78-7155-01 15 89421289 89421289 C A HAPLN3 Missense_Mutation p.C332F 0.74 deleterious(0) probably_damaging(1) TCGA-78-7155-01 15 90631962 90631964 TCT - IDH2 In_Frame_Del p.K130del 0.25 TCGA-78-7155-01 16 1035161 1035161 C A SOX8 Silent p.P372P 0.27 TCGA-78-7155-01 16 113013 113013 C A RHBDF1 Silent p.S210S 0.58 TCGA-78-7155-01 16 15204591 15204591 G A RP11-1186N24.5 RNA 0.66 TCGA-78-7155-01 16 15715643 15715643 C A KIAA0430 Missense_Mutation p.K862N 0.36 deleterious(0) possibly_damaging(0.678) TCGA-78-7155-01 16 15878555 15878555 G T MYH11 Nonsense_Mutation p.Y218* 0.41 TCGA-78-7155-01 16 16146667 16146667 G T ABCC1 Silent p.T489T 0.40 TCGA-78-7155-01 16 18602570 18602570 G T ABCC6P1 RNA 0.39 TCGA-78-7155-01 16 19079004 19079004 G - COQ7 Frame_Shift_Del p.A7Rfs*33 0.40 TCGA-78-7155-01 16 20355356 20355356 G T UMOD Missense_Mutation p.P441T 0.42 deleterious(0) probably_damaging(1) TCGA-78-7155-01 16 20376864 20376864 T C PDILT Splice_Site p.X373_splice 0.41 TCGA-78-7155-01 16 20486999 20486999 C A ACSM2A Nonsense_Mutation p.C334* 0.37 TCGA-78-7155-01 16 21133343 21133343 G A DNAH3 Missense_Mutation p.P503S 0.53 deleterious(0.01) probably_damaging(0.993) TCGA-78-7155-01 16 21222876 21222876 G T ZP2 5'UTR 0.41 TCGA-78-7155-01 16 21261441 21261441 C A ANKS4B Missense_Mutation p.P185H 0.38 tolerated(0.54) benign(0.17) TCGA-78-7155-01 16 21847236 21847236 G T NPIPB4 Intron 0.34 TCGA-78-7155-01 16 2284322 2284322 A T E4F1 Missense_Mutation p.H509L 0.40 deleterious(0) probably_damaging(1) TCGA-78-7155-01 16 24373226 24373226 G T CACNG3 3'UTR 0.33 TCGA-78-7155-01 16 27456035 27456035 C A IL21R Nonsense_Mutation p.S227* 0.28 TCGA-78-7155-01 16 27476583 27476583 G T GTF3C1 Missense_Mutation p.Q1785K 0.35 tolerated(0.24) benign(0.288) TCGA-78-7155-01 16 27497373 27497373 T A GTF3C1 Missense_Mutation p.Q1268L 0.44 tolerated(0.08) possibly_damaging(0.701) TCGA-78-7155-01 16 28507384 28507384 C T APOBR Missense_Mutation p.S341L 0.36 tolerated(0.23) possibly_damaging(0.504) TCGA-78-7155-01 16 28909350 28909350 C T ATP2A1 Silent p.F483F 0.35 TCGA-78-7155-01 16 28948976 28948976 G T CD19 Silent p.L468L 0.33 TCGA-78-7155-01 16 30128053 30128053 C A MAPK3 Missense_Mutation p.R359L 0.44 tolerated(0.21) benign(0.002) TCGA-78-7155-01 16 30977498 30977498 G T SETD1A Nonsense_Mutation p.G766* 0.52 TCGA-78-7155-01 16 30990664 30990664 C T SETD1A Missense_Mutation p.P1186L 0.28 unknown(0) TCGA-78-7155-01 16 31196353 31196353 G C FUS Missense_Mutation p.G206A 0.38 tolerated(0.06) unknown(0) TCGA-78-7155-01 16 31230804 31230804 G T TRIM72 Missense_Mutation p.E227D 0.36 tolerated(0.23) benign(0.001) TCGA-78-7155-01 16 31382974 31382974 T A ITGAX Missense_Mutation p.L677M 0.46 deleterious(0) benign(0.336) TCGA-78-7155-01 16 31393210 31393210 C A ITGAX Missense_Mutation p.S1158R 0.48 tolerated(0.2) benign(0.001) TCGA-78-7155-01 16 31471207 31471207 C T ARMC5 Missense_Mutation p.P121L 0.48 tolerated_low_confidence(0.07) unknown(0) TCGA-78-7155-01 16 3187234 3187234 C G ZNF213 5'UTR 0.49 TCGA-78-7155-01 16 31926245 31926245 G C ZNF267 Missense_Mutation p.L225F 0.45 tolerated(1) benign(0.007) TCGA-78-7155-01 16 33647478 33647478 C A RP11-812E19.9 Missense_Mutation p.C41F 0.41 deleterious_low_confidence(0) possibly_damaging(0.594) TCGA-78-7155-01 16 34739654 34739654 G C RP11-80F22.15 RNA 0.27 TCGA-78-7155-01 16 3900688 3900688 C A CREBBP Missense_Mutation p.Q136H 0.44 probably_damaging(0.962) TCGA-78-7155-01 16 4411088 4411088 T A CORO7 Splice_Site p.X592_splice 0.27 TCGA-78-7155-01 16 46755035 46755035 C A MYLK3 Missense_Mutation p.R662M 0.67 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 16 48174658 48174658 G T ABCC12 Silent p.S199S 0.70 TCGA-78-7155-01 16 4924437 4924437 G T UBN1 Missense_Mutation p.V676L 0.43 deleterious(0.01) benign(0.111) TCGA-78-7155-01 16 49671721 49671721 C A ZNF423 Missense_Mutation p.D448Y 0.72 deleterious(0.01) benign(0.396) TCGA-78-7155-01 16 56976133 56976133 C T HERPUD1 Missense_Mutation p.P332L 0.60 tolerated(0.3) benign(0.003) TCGA-78-7155-01 16 57689409 57689409 C T GPR56 Silent p.L289L 0.72 TCGA-78-7155-01 16 65015995 65015995 C - CDH11 Frame_Shift_Del p.R404Efs*14 0.36 TCGA-78-7155-01 16 67298304 67298304 G C SLC9A5 Missense_Mutation p.R631P 0.65 deleterious(0.01) probably_damaging(0.922) TCGA-78-7155-01 16 67709088 67709088 C A GFOD2 Silent p.L376L 0.59 TCGA-78-7155-01 16 67709089 67709089 A G GFOD2 Missense_Mutation p.L376P 0.59 deleterious(0) probably_damaging(0.982) TCGA-78-7155-01 16 69184491 69184491 C A CIRH1A Missense_Mutation p.Q264K 0.60 tolerated(0.09) benign(0.347) TCGA-78-7155-01 16 71319263 71319263 A - CMTR2 Frame_Shift_Del p.M188Wfs*24 0.45 TCGA-78-7155-01 16 72833961 72833961 C A ZFHX3 Missense_Mutation p.G1311V 0.08 benign(0.095) TCGA-78-7155-01 16 7382892 7382892 A T RBFOX1 5'UTR 0.48 TCGA-78-7155-01 16 74487121 74487121 C A GLG1 Missense_Mutation p.G1162C 0.60 deleterious(0) probably_damaging(1) TCGA-78-7155-01 16 74662385 74662385 T A RFWD3 Missense_Mutation p.N645I 0.70 tolerated(0.33) benign(0.003) TCGA-78-7155-01 16 7703943 7703943 A G RBFOX1 Missense_Mutation p.Y315C 0.38 deleterious(0.04) benign(0.008) TCGA-78-7155-01 16 77227493 77227493 G A MON1B Silent p.G98G 0.54 TCGA-78-7155-01 16 84229633 84229633 G A ADAD2 Missense_Mutation p.S504N 0.70 tolerated(0.06) benign(0.32) TCGA-78-7155-01 16 86544356 86544356 A T FOXF1 Missense_Mutation p.I61F 0.72 deleterious(0) probably_damaging(1) TCGA-78-7155-01 16 8722679 8722679 G T METTL22 Nonsense_Mutation p.E76* 0.26 TCGA-78-7155-01 16 8722940 8722940 G C METTL22 Missense_Mutation p.G163R 0.30 tolerated(0.24) benign(0.063) TCGA-78-7155-01 16 89789078 89789078 G T ZNF276 Silent p.R115R 0.76 TCGA-78-7155-01 17 10265475 10265475 G T MYH13 Silent p.I155I 0.54 TCGA-78-7155-01 17 10303742 10303742 G T MYH8 Missense_Mutation p.L1234I 0.27 deleterious(0.01) benign(0.062) TCGA-78-7155-01 17 10314148 10314148 C A MYH8 Missense_Mutation p.W511C 0.23 deleterious(0) probably_damaging(0.995) TCGA-78-7155-01 17 10318833 10318833 C A MYH8 Missense_Mutation p.A202S 0.47 deleterious(0.01) possibly_damaging(0.614) TCGA-78-7155-01 17 10398511 10398511 C T MYH1 Missense_Mutation p.D1765N 0.24 deleterious(0) possibly_damaging(0.551) TCGA-78-7155-01 17 10402067 10402067 C A MYH1 Nonsense_Mutation p.E1353* 0.61 TCGA-78-7155-01 17 10406204 10406204 C A MYH1 Missense_Mutation p.G988C 0.18 deleterious(0.04) benign(0.443) TCGA-78-7155-01 17 10415180 10415180 G T MYH1 Missense_Mutation p.D464E 0.54 deleterious(0.02) probably_damaging(0.999) TCGA-78-7155-01 17 10428226 10428226 G T MYH2 Missense_Mutation p.L1607M 0.57 deleterious(0) probably_damaging(0.961) TCGA-78-7155-01 17 10432523 10432523 G A MYH2 Nonsense_Mutation p.Q1104* 0.19 TCGA-78-7155-01 17 10433235 10433235 C A MYH2 Nonsense_Mutation p.E952* 0.41 TCGA-78-7155-01 17 11572494 11572494 G T DNAH9 Missense_Mutation p.V949F 0.78 benign(0.005) TCGA-78-7155-01 17 15971414 15971414 G C NCOR1 Missense_Mutation p.S1512C 0.45 possibly_damaging(0.681) TCGA-78-7155-01 17 16456737 16456737 C A ZNF287 Missense_Mutation p.W240L 0.81 tolerated(0.52) benign(0.073) TCGA-78-7155-01 17 20319836 20319836 G T SRP68P3 RNA 0.73 TCGA-78-7155-01 17 21731600 21731600 G A UBBP4 Silent p.L225L 0.48 TCGA-78-7155-01 17 26603976 26603976 T C AC061975.8 5'Flank 0.62 TCGA-78-7155-01 17 26883203 26883203 C A PIGS Missense_Mutation p.V388L 0.51 deleterious(0.02) benign(0.169) TCGA-78-7155-01 17 26883204 26883204 C G PIGS Missense_Mutation p.E387D 0.51 tolerated(0.09) benign(0.141) TCGA-78-7155-01 17 27849415 27849415 G C TAOK1 Missense_Mutation p.E676Q 0.27 tolerated(0.1) benign(0.196) TCGA-78-7155-01 17 28530283 28530283 G A SLC6A4 Silent p.I575I 0.59 TCGA-78-7155-01 17 30774031 30774031 G A PSMD11 Missense_Mutation p.G54R 0.30 deleterious(0) probably_damaging(0.992) TCGA-78-7155-01 17 3101025 3101025 C G OR1A2 Missense_Mutation p.I71M 0.15 deleterious(0.02) possibly_damaging(0.468) TCGA-78-7155-01 17 3181358 3181358 T C OR3A2 Missense_Mutation p.N291S 0.20 tolerated(0.64) benign(0.052) TCGA-78-7155-01 17 32583819 32583819 C A CCL2 Missense_Mutation p.D91E 0.24 deleterious(0.04) benign(0.167) TCGA-78-7155-01 17 32959844 32959844 C A TMEM132E Missense_Mutation p.P445H 0.53 deleterious(0) probably_damaging(1) TCGA-78-7155-01 17 33348594 33348594 C G RFFL Silent p.L129L 0.35 TCGA-78-7155-01 17 33520510 33520510 C A SLC35G3 Missense_Mutation p.A273S 0.60 tolerated(0.05) possibly_damaging(0.702) TCGA-78-7155-01 17 33771790 33771790 C A SLFN13 Missense_Mutation p.G304W 0.48 deleterious(0) possibly_damaging(0.855) TCGA-78-7155-01 17 33903138 33903138 G C PEX12 Missense_Mutation p.S248C 0.54 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 17 34077228 34077228 C G GAS2L2 Silent p.A165A 0.26 TCGA-78-7155-01 17 34344875 34344875 C A CCL23 Missense_Mutation p.Q20H 0.40 tolerated(0.07) benign(0.154) TCGA-78-7155-01 17 3593389 3593389 G A P2RX5 Missense_Mutation p.R197C 0.50 deleterious(0.05) possibly_damaging(0.559) TCGA-78-7155-01 17 3628116 3628116 G T GSG2 Missense_Mutation p.G296V 0.64 tolerated_low_confidence(0.18) benign(0.178) TCGA-78-7155-01 17 37371051 37371051 C A STAC2 Missense_Mutation p.G279V 0.80 tolerated(0.31) benign(0.236) TCGA-78-7155-01 17 38209742 38209742 C A MED24 Missense_Mutation p.W37L 0.84 tolerated(0.39) benign(0.339) TCGA-78-7155-01 17 39388903 39388903 T G KRTAP9-3 Silent p.T50T 0.78 TCGA-78-7155-01 17 39389150 39389150 G A KRTAP9-3 Missense_Mutation p.A133T 0.77 tolerated(0.5) probably_damaging(0.999) TCGA-78-7155-01 17 39506848 39506848 C G KRT33A Missense_Mutation p.E58Q 0.82 deleterious(0.01) possibly_damaging(0.58) TCGA-78-7155-01 17 39538006 39538006 G C KRT34 Missense_Mutation p.N172K 0.84 deleterious(0.03) benign(0.001) TCGA-78-7155-01 17 39883375 39883375 C A HAP1 Nonsense_Mutation p.E433* 0.79 TCGA-78-7155-01 17 42332001 42332001 C G SLC4A1 Silent p.V640V 0.91 TCGA-78-7155-01 17 42333059 42333059 G T SLC4A1 Missense_Mutation p.S594R 0.85 deleterious(0) probably_damaging(0.997) TCGA-78-7155-01 17 44060875 44060875 C G MAPT Silent p.S235S 0.57 TCGA-78-7155-01 17 46654196 46654196 A T HOXB4 Missense_Mutation p.M215K 0.82 deleterious(0) probably_damaging(1) TCGA-78-7155-01 17 46868791 46868791 G C TTLL6 Missense_Mutation p.I391M 0.88 deleterious(0) probably_damaging(0.997) TCGA-78-7155-01 17 47295217 47295217 G T ABI3 Silent p.T134T 0.83 TCGA-78-7155-01 17 47297633 47297633 C A ABI3 Silent p.A249A 0.81 TCGA-78-7155-01 17 48245326 48245326 G A SGCA Missense_Mutation p.D111N 0.74 tolerated(0.73) benign(0.005) TCGA-78-7155-01 17 48696314 48696314 T C CACNA1G Missense_Mutation p.L1909P 0.81 tolerated(0.32) benign(0) TCGA-78-7155-01 17 49825100 49825100 C G CA10 Missense_Mutation p.G120R 0.85 deleterious(0) probably_damaging(0.988) TCGA-78-7155-01 17 5015118 5015118 C T ZNF232 5'UTR 0.26 TCGA-78-7155-01 17 53797917 53797917 G A TMEM100 3'UTR 0.84 TCGA-78-7155-01 17 5418227 5418227 G T NLRP1 Silent p.P1423P 0.37 TCGA-78-7155-01 17 56429503 56429503 C A SUPT4H1 5'UTR 0.11 TCGA-78-7155-01 17 56435163 56435163 C A RNF43 Silent p.G658G 0.75 TCGA-78-7155-01 17 56438273 56438273 G A RNF43 Silent p.I240I 0.83 TCGA-78-7155-01 17 5998421 5998421 G T WSCD1 Splice_Site p.X243_splice 0.27 TCGA-78-7155-01 17 60107008 60107008 T G MED13 Missense_Mutation p.K393Q 0.82 deleterious(0.03) probably_damaging(0.997) TCGA-78-7155-01 17 60107009 60107009 C A MED13 Missense_Mutation p.R392S 0.81 tolerated(0.1) possibly_damaging(0.831) TCGA-78-7155-01 17 61911024 61911024 C T SMARCD2 Missense_Mutation p.D414N 0.22 deleterious(0) probably_damaging(0.99) TCGA-78-7155-01 17 61957865 61957865 C A GH2 Missense_Mutation p.W241C 0.85 tolerated_low_confidence(0.12) benign(0.062) TCGA-78-7155-01 17 6684114 6684114 G A FBXO39 Silent p.R309R 0.58 TCGA-78-7155-01 17 67079063 67079063 C G ABCA6 Missense_Mutation p.V1523L 0.74 tolerated(1) benign(0.003) TCGA-78-7155-01 17 67186585 67186585 T A ABCA10 Missense_Mutation p.Q682L 0.77 tolerated(0.46) benign(0.02) TCGA-78-7155-01 17 68171564 68171564 C - KCNJ2 Frame_Shift_Del p.F129Sfs*15 0.26 TCGA-78-7155-01 17 71394500 71394510 GCGGGCATCGG - SDK2 Frame_Shift_Del p.P1051Lfs*33 0.15 TCGA-78-7155-01 17 7323846 7323846 T A SPEM1 Missense_Mutation p.L48Q 0.26 deleterious(0) possibly_damaging(0.648) TCGA-78-7155-01 17 73870763 73870763 C A TRIM47 Missense_Mutation p.R573L 0.75 deleterious(0.02) possibly_damaging(0.848) TCGA-78-7155-01 17 7411605 7411605 G T POLR2A Silent p.A1092A 0.57 TCGA-78-7155-01 17 74902137 74902137 G T MGAT5B Missense_Mutation p.G309V 0.72 deleterious(0) probably_damaging(1) TCGA-78-7155-01 17 7574017 7574017 C A TP53 Missense_Mutation p.R337L 0.78 deleterious(0.01) probably_damaging(0.914) TCGA-78-7155-01 17 76171087 76171087 A G TK1 Intron 0.69 TCGA-78-7155-01 17 76201752 76201752 G A AFMID Missense_Mutation p.R238H 0.82 tolerated(0.17) benign(0.008) TCGA-78-7155-01 17 76571115 76571115 G T DNAH17 Missense_Mutation p.L9I 0.46 benign(0.019) TCGA-78-7155-01 17 7727220 7727220 G A DNAH2 Missense_Mutation p.V3800M 0.91 probably_damaging(0.989) TCGA-78-7155-01 17 77711769 77711769 C A ENPP7 Missense_Mutation p.A434D 0.76 tolerated_low_confidence(0.28) benign(0.049) TCGA-78-7155-01 17 7910409 7910409 C T GUCY2D Silent p.F470F 0.30 TCGA-78-7155-01 17 79612613 79612613 G A TSPAN10 Missense_Mutation p.R211K 0.74 tolerated(0.12) benign(0) TCGA-78-7155-01 17 8222142 8222142 G T ARHGEF15 Silent p.G649G 0.24 TCGA-78-7155-01 17 8408032 8408032 C T MYH10 Silent p.T1193T 0.06 TCGA-78-7155-01 18 10671667 10671667 G T PIEZO2 Silent p.R2706R 0.84 TCGA-78-7155-01 18 11752922 11752922 C A GNAL Silent p.P149P 0.92 TCGA-78-7155-01 18 13826127 13826127 G T MC5R Missense_Mutation p.M121I 0.87 deleterious(0.04) benign(0.326) TCGA-78-7155-01 18 13884505 13884505 C A MC2R 3'UTR 0.42 TCGA-78-7155-01 18 13885081 13885081 C A MC2R Missense_Mutation p.R146L 0.84 deleterious(0) benign(0.023) TCGA-78-7155-01 18 14522421 14522421 T A POTEC Splice_Site p.X415_splice 0.86 TCGA-78-7155-01 18 14542843 14542843 C A POTEC Missense_Mutation p.W101C 0.64 deleterious_low_confidence(0.01) possibly_damaging(0.759) TCGA-78-7155-01 18 14542844 14542844 C A POTEC Missense_Mutation p.W101L 0.64 deleterious_low_confidence(0.01) benign(0.307) TCGA-78-7155-01 18 21338378 21338378 G A LAMA3 Silent p.Q322Q 0.91 TCGA-78-7155-01 18 21426388 21426388 G T LAMA3 Missense_Mutation p.G1283W 0.83 probably_damaging(1) TCGA-78-7155-01 18 23738084 23738084 A T PSMA8 Splice_Site p.X125_splice 0.93 TCGA-78-7155-01 18 24039845 24039845 C A KCTD1 Missense_Mutation p.Q118H 0.79 tolerated(0.17) benign(0.008) TCGA-78-7155-01 18 24441125 24441125 T - AQP4 Frame_Shift_Del p.S196Lfs*17 0.42 TCGA-78-7155-01 18 28916327 28916327 A G DSG1 Missense_Mutation p.Y339C 0.71 deleterious(0) possibly_damaging(0.868) TCGA-78-7155-01 18 28991084 28991084 C A DSG4 Silent p.A695A 0.64 TCGA-78-7155-01 18 42530404 42530404 G T SETBP1 Missense_Mutation p.G367W 0.74 deleterious(0) probably_damaging(0.997) TCGA-78-7155-01 18 44266233 44266233 C A ST8SIA5 Missense_Mutation p.R158L 0.74 benign(0.423) TCGA-78-7155-01 18 51686216 51686216 T C MBD2 Silent p.A389A 0.85 TCGA-78-7155-01 18 5291177 5291177 G A ZBTB14 Missense_Mutation p.R344C 0.87 deleterious(0) probably_damaging(0.995) TCGA-78-7155-01 18 56246747 56246747 C A ALPK2 Missense_Mutation p.G421C 0.92 tolerated(0.1) benign(0.003) TCGA-78-7155-01 18 56586262 56586262 A T ZNF532 Missense_Mutation p.K248M 0.81 deleterious(0.03) probably_damaging(0.928) TCGA-78-7155-01 18 59821857 59821857 T C PIGN Missense_Mutation p.Y157C 0.71 tolerated(0.28) benign(0.003) TCGA-78-7155-01 18 61306936 61306936 A T SERPINB4 Missense_Mutation p.F182I 0.89 deleterious(0) probably_damaging(0.983) TCGA-78-7155-01 18 61465858 61465858 G T SERPINB7 Missense_Mutation p.G159C 0.76 deleterious(0.03) possibly_damaging(0.708) TCGA-78-7155-01 18 61569721 61569721 A T SERPINB2 Silent p.L254L 0.87 TCGA-78-7155-01 18 65179594 65179594 C - DSEL Frame_Shift_Del p.G761Afs*5 0.48 TCGA-78-7155-01 18 7567789 7567789 G T PTPRM 5'UTR 0.91 TCGA-78-7155-01 18 77108132 77108132 G T ATP9B Missense_Mutation p.A947S 0.74 deleterious(0.01) possibly_damaging(0.735) TCGA-78-7155-01 18 8370953 8370953 A G PTPRM Missense_Mutation p.I1040M 0.34 deleterious(0.03) possibly_damaging(0.743) TCGA-78-7155-01 18 8784148 8784148 C A SOGA2 Missense_Mutation p.S346R 0.40 deleterious(0.04) benign(0.036) TCGA-78-7155-01 18 9122556 9122556 G C NDUFV2 Missense_Mutation p.A116P 0.70 deleterious(0) probably_damaging(1) TCGA-78-7155-01 19 10254444 10254444 G A DNMT1 Silent p.Y1038Y 0.37 TCGA-78-7155-01 19 12061385 12061385 G T ZNF700 3'UTR 1.00 TCGA-78-7155-01 19 13039359 13039359 G A FARSA Silent p.L239L 0.74 TCGA-78-7155-01 19 13323474 13323474 G T CACNA1A Silent p.P2007P 0.75 TCGA-78-7155-01 19 13919735 13919735 G A ZSWIM4 Silent p.K266K 0.29 TCGA-78-7155-01 19 14710863 14710863 C A CLEC17A Missense_Mutation p.P255T 0.74 deleterious(0) probably_damaging(0.979) TCGA-78-7155-01 19 15220176 15220176 G C SYDE1 Missense_Mutation p.G133A 0.41 tolerated(0.37) benign(0.004) TCGA-78-7155-01 19 15636206 15636206 G C CYP4F22 Missense_Mutation p.R20P 0.30 tolerated(0.33) probably_damaging(0.996) TCGA-78-7155-01 19 15996831 15996831 C G CYP4F2 Missense_Mutation p.V340L 0.16 tolerated(0.46) benign(0.02) TCGA-78-7155-01 19 18965953 18965953 G T UPF1 Silent p.V482V 0.72 TCGA-78-7155-01 19 20229559 20229559 G A ZNF90 Missense_Mutation p.C399Y 0.27 deleterious(0) probably_damaging(0.927) TCGA-78-7155-01 19 21365467 21365467 G T ZNF431 Missense_Mutation p.D121Y 0.88 deleterious(0.02) probably_damaging(0.91) TCGA-78-7155-01 19 22362994 22362994 C A ZNF676 Nonsense_Mutation p.E509* 0.32 TCGA-78-7155-01 19 3009671 3009671 G A TLE2 Missense_Mutation p.P348S 1.00 tolerated(0.36) benign(0.003) TCGA-78-7155-01 19 36051513 36051513 G A ATP4A Missense_Mutation p.A180V 0.79 deleterious(0) probably_damaging(0.997) TCGA-78-7155-01 19 36054538 36054538 C A ATP4A 5'UTR 0.80 TCGA-78-7155-01 19 36322197 36322197 C A NPHS1 Splice_Site p.X1129_splice 0.80 TCGA-78-7155-01 19 36338987 36338987 A G NPHS1 Silent p.L466L 0.75 TCGA-78-7155-01 19 38089335 38089335 G T ZNF540 5'UTR 0.81 TCGA-78-7155-01 19 38104174 38104174 A T ZNF540 3'UTR 0.88 TCGA-78-7155-01 19 38939429 38939429 G A RYR1 Silent p.L366L 0.87 TCGA-78-7155-01 19 38993190 38993190 A C RYR1 Missense_Mutation p.Y2553S 0.92 benign(0.094) TCGA-78-7155-01 19 40710509 40710509 G T MAP3K10 Silent p.T327T 0.48 TCGA-78-7155-01 19 40832386 40832386 C G C19orf47 Silent p.L186L 0.32 TCGA-78-7155-01 19 41009860 41009860 G A SPTBN4 Missense_Mutation p.A496T 0.83 deleterious(0) possibly_damaging(0.626) TCGA-78-7155-01 19 41135376 41135376 C G LTBP4 Missense_Mutation p.S1598C 0.49 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 19 41518391 41518391 G T CYP2B6 Splice_Site p.X384_splice 0.78 TCGA-78-7155-01 19 4153744 4153744 C T CREB3L3 5'UTR 0.38 TCGA-78-7155-01 19 41596345 41596345 C T CYP2A13 Missense_Mutation p.T177I 0.77 tolerated(0.26) possibly_damaging(0.856) TCGA-78-7155-01 19 43258502 43258502 A G PSG8 Missense_Mutation p.M409T 0.81 tolerated(0.27) benign(0.005) TCGA-78-7155-01 19 43576090 43576090 G - PSG2 Frame_Shift_Del p.R243Efs*74 0.47 TCGA-78-7155-01 19 43866474 43866474 T A CD177 3'UTR 1.00 TCGA-78-7155-01 19 46388940 46388940 G T IRF2BP1 Silent p.A31A 0.93 TCGA-78-7155-01 19 47589728 47589728 C T ZC3H4 Missense_Mutation p.M261I 0.86 benign(0.174) TCGA-78-7155-01 19 48382354 48382354 C T SULT2A1 Missense_Mutation p.G169D 0.42 deleterious(0.05) possibly_damaging(0.602) TCGA-78-7155-01 19 49573251 49573251 T C KCNA7 3'UTR 0.28 TCGA-78-7155-01 19 49993753 49993753 G T RPL13A Missense_Mutation p.R59L 0.84 deleterious(0) benign(0.345) TCGA-78-7155-01 19 50208355 50208355 G T CPT1C Missense_Mutation p.R288L 0.86 deleterious(0.01) possibly_damaging(0.476) TCGA-78-7155-01 19 51192614 51192614 A T SHANK1 Intron 0.32 TCGA-78-7155-01 19 51363378 51363378 C A KLK3 Missense_Mutation p.P261T 0.22 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 19 51379992 51379992 G T KLK2 Missense_Mutation p.W157C 0.56 deleterious(0) probably_damaging(1) TCGA-78-7155-01 19 51410056 51410056 C G KLK4 3'UTR 0.27 TCGA-78-7155-01 19 51518109 51518109 T A KLK10 Missense_Mutation p.T260S 0.24 deleterious(0.03) possibly_damaging(0.764) TCGA-78-7155-01 19 51770667 51770667 G A SIGLECL1 Missense_Mutation p.A151T 0.27 tolerated(0.38) benign(0.277) TCGA-78-7155-01 19 51983828 51983828 C T CEACAM18 Silent p.G159G 0.59 TCGA-78-7155-01 19 52034179 52034179 C T SIGLEC6 Silent p.G154G 0.55 TCGA-78-7155-01 19 52376688 52376688 G T ZNF577 Silent p.P185P 0.56 TCGA-78-7155-01 19 53014061 53014061 G T ZNF578 Missense_Mutation p.D143Y 0.59 tolerated(0.06) probably_damaging(0.977) TCGA-78-7155-01 19 53015594 53015594 G C ZNF578 3'Flank 0.16 TCGA-78-7155-01 19 53762072 53762072 G T VN1R2 Missense_Mutation p.M148I 0.31 tolerated(0.08) possibly_damaging(0.571) TCGA-78-7155-01 19 53886770 53886770 A T ZNF525 3'UTR 0.45 TCGA-78-7155-01 19 54172495 54172495 C A MIR512-2 RNA 0.24 TCGA-78-7155-01 19 54515347 54515347 G T CACNG6 Silent p.L229L 0.24 TCGA-78-7155-01 19 54621832 54621832 G C PRPF31 Missense_Mutation p.K58N 0.34 tolerated(0.12) benign(0.157) TCGA-78-7155-01 19 54761078 54761078 C A LILRB5 5'UTR 0.37 TCGA-78-7155-01 19 54782228 54782228 G A LILRB2 Missense_Mutation p.P382S 0.58 tolerated(1) benign(0.148) TCGA-78-7155-01 19 54962470 54962470 G T LENG8 5'UTR 0.49 TCGA-78-7155-01 19 55174470 55174470 C A LILRB4 5'UTR 0.28 TCGA-78-7155-01 19 55236713 55236713 G T KIR3DL3 Missense_Mutation p.G12V 0.33 deleterious(0.02) benign(0.077) TCGA-78-7155-01 19 55451566 55451566 C A NLRP7 Silent p.A207A 0.56 TCGA-78-7155-01 19 55493576 55493576 G C NLRP2 Missense_Mutation p.E170D 0.29 tolerated(0.41) benign(0.119) TCGA-78-7155-01 19 56443530 56443530 C A NLRP13 Missense_Mutation p.G50W 0.50 deleterious(0.01) probably_damaging(0.964) TCGA-78-7155-01 19 56487608 56487608 G A NLRP8 Missense_Mutation p.D939N 0.33 tolerated(0.16) benign(0.095) TCGA-78-7155-01 19 56544100 56544100 C A NLRP5 Silent p.T800T 0.46 TCGA-78-7155-01 19 57325401 57325401 C G PEG3 Missense_Mutation p.G1470A 0.29 tolerated(0.34) possibly_damaging(0.591) TCGA-78-7155-01 19 57646867 57646867 G T ZIM3 Missense_Mutation p.Q280K 0.55 tolerated(0.16) benign(0.002) TCGA-78-7155-01 19 57868146 57868146 A T ZNF304 Silent p.G303G 0.26 TCGA-78-7155-01 19 57910682 57910682 G T ZNF548 Missense_Mutation p.G355W 0.27 deleterious(0) probably_damaging(0.998) TCGA-78-7155-01 19 5832203 5832203 G A FUT6 Missense_Mutation p.R126W 0.90 deleterious(0) possibly_damaging(0.773) TCGA-78-7155-01 19 58352808 58352808 A T ZNF587B Missense_Mutation p.S256C 0.27 tolerated(0.07) probably_damaging(0.976) TCGA-78-7155-01 19 58453766 58453766 T A ZNF256 Missense_Mutation p.Q137L 0.48 deleterious(0.01) benign(0.078) TCGA-78-7155-01 19 58551820 58551820 C A ZSCAN1 Missense_Mutation p.L125M 0.29 tolerated(0.06) possibly_damaging(0.882) TCGA-78-7155-01 19 59021368 59021368 G A SLC27A5 Silent p.L301L 0.16 TCGA-78-7155-01 19 6467400 6467400 G A DENND1C 3'UTR 1.00 TCGA-78-7155-01 19 6686289 6686289 C A C3 Missense_Mutation p.R1219L 0.29 deleterious(0.03) benign(0.362) TCGA-78-7155-01 19 7166355 7166355 C A INSR Silent p.T557T 0.92 TCGA-78-7155-01 19 7584982 7584982 A T ZNF358 Missense_Mutation p.H285L 0.40 deleterious(0) probably_damaging(0.997) TCGA-78-7155-01 19 877041 877041 C A MED16 Missense_Mutation p.S498I 0.81 deleterious(0.02) possibly_damaging(0.46) TCGA-78-7155-01 19 8841989 8841989 C A OR2Z1 Missense_Mutation p.S200Y 0.89 tolerated(1) probably_damaging(0.984) TCGA-78-7155-01 19 8842092 8842092 A G OR2Z1 Silent p.R234R 0.82 TCGA-78-7155-01 19 9060014 9060014 G T MUC16 Silent p.A9144A 0.73 TCGA-78-7155-01 19 9067730 9067730 C T MUC16 Silent p.K6572K 0.78 TCGA-78-7155-01 19 9088057 9088057 A T MUC16 Missense_Mutation p.L1253H 0.82 unknown(0) TCGA-78-7155-01 19 9325053 9325053 C A OR7D4 Missense_Mutation p.W154L 0.83 tolerated(1) benign(0.02) TCGA-78-7155-01 19 9764212 9764213 AG - ZNF562 Frame_Shift_Del p.C232* 0.43 TCGA-78-7155-01 1 104112603 104112603 A C AMY2B Intron 0.23 TCGA-78-7155-01 1 104114266 104114266 G C AMY2B Missense_Mutation p.W14C 0.32 tolerated(0.18) possibly_damaging(0.469) TCGA-78-7155-01 1 104160642 104160642 C G AMY2A Missense_Mutation p.P79A 0.29 deleterious(0) probably_damaging(0.979) TCGA-78-7155-01 1 107691462 107691462 G C NTNG1 Splice_Site p.X82_splice 0.29 TCGA-78-7155-01 1 107937821 107937821 C A NTNG1 Missense_Mutation p.S311R 0.38 deleterious(0.02) benign(0.151) TCGA-78-7155-01 1 108138931 108138931 G T VAV3 Silent p.L751L 0.32 TCGA-78-7155-01 1 108313319 108313319 C G VAV3 Missense_Mutation p.C196S 0.29 deleterious(0) probably_damaging(0.998) TCGA-78-7155-01 1 109197453 109197453 G - HENMT1 Frame_Shift_Del p.L95Wfs*5 0.32 TCGA-78-7155-01 1 109792961 109792961 A G CELSR2 Missense_Mutation p.H87R 0.44 tolerated_low_confidence(0.19) benign(0.006) TCGA-78-7155-01 1 110022270 110022270 C A SYPL2 3'UTR 0.50 TCGA-78-7155-01 1 110655547 110655547 G T UBL4B Nonsense_Mutation p.E131* 0.40 TCGA-78-7155-01 1 112524472 112524472 G A KCND3 Missense_Mutation p.R293C 0.41 deleterious(0) possibly_damaging(0.898) TCGA-78-7155-01 1 113058873 113058873 C A WNT2B Missense_Mutation p.T172N 0.38 tolerated(0.1) benign(0.247) TCGA-78-7155-01 1 114377049 114377049 G A PTPN22 Missense_Mutation p.P636L 0.38 tolerated(0.56) benign(0.003) TCGA-78-7155-01 1 114442706 114442706 T A AP4B1 Missense_Mutation p.S312C 0.45 deleterious(0.02) probably_damaging(0.951) TCGA-78-7155-01 1 114499307 114499307 G T HIPK1 Missense_Mutation p.R489I 0.44 deleterious(0) probably_damaging(0.992) TCGA-78-7155-01 1 117146412 117146412 C G IGSF3 Missense_Mutation p.M506I 0.47 tolerated(0.09) benign(0.098) TCGA-78-7155-01 1 117158852 117158852 C G IGSF3 Missense_Mutation p.G91R 0.28 tolerated(0.68) benign(0.012) TCGA-78-7155-01 1 117626641 117626642 CT - TTF2 Frame_Shift_Del p.S636Lfs*2 0.33 TCGA-78-7155-01 1 11769435 11769435 G A DRAXIN Silent p.A185A 0.15 TCGA-78-7155-01 1 119441667 119441667 G T TBX15 Silent p.T230T 0.34 TCGA-78-7155-01 1 12907569 12907569 G T HNRNPCL1 Missense_Mutation p.Q192K 0.12 tolerated(0.13) benign(0.089) TCGA-78-7155-01 1 13036368 13036368 A T PRAMEF22 Missense_Mutation p.Q147L 0.26 tolerated(0.09) probably_damaging(0.948) TCGA-78-7155-01 1 1412682 1412682 G T ATAD3B Silent p.A78A 0.78 TCGA-78-7155-01 1 1430994 1430995 GA - ATAD3B Frame_Shift_Del p.E582Afs*32 0.31 TCGA-78-7155-01 1 144882701 144882701 C A PDE4DIP Missense_Mutation p.Q1106H 0.15 tolerated(0.11) benign(0.036) TCGA-78-7155-01 1 145273203 145273203 G T NOTCH2NL Missense_Mutation p.L19F 0.11 deleterious(0.04) benign(0.404) TCGA-78-7155-01 1 145281550 145281550 C T NOTCH2NL Silent p.L160L 0.08 TCGA-78-7155-01 1 147381061 147381061 G T GJA8 Missense_Mutation p.G327W 0.38 deleterious(0) probably_damaging(0.988) TCGA-78-7155-01 1 147955267 147955267 T A PPIAL4A Silent p.A26A 0.38 TCGA-78-7155-01 1 148344650 148344650 C T NBPF20 Missense_Mutation p.E90K 0.13 benign(0.301) TCGA-78-7155-01 1 149878336 149878336 G T SV2A Missense_Mutation p.P584Q 0.44 tolerated(1) benign(0) TCGA-78-7155-01 1 150483557 150483557 G A ECM1 Silent p.Q224Q 0.46 TCGA-78-7155-01 1 152191134 152191134 G C HRNR Missense_Mutation p.R991G 0.39 unknown(0) TCGA-78-7155-01 1 152191741 152191741 G A HRNR Silent p.S788S 0.49 TCGA-78-7155-01 1 152192435 152192435 C A HRNR Missense_Mutation p.S557I 0.38 unknown(0) TCGA-78-7155-01 1 152277418 152277418 T G FLG Missense_Mutation p.H3315P 0.35 unknown(0) TCGA-78-7155-01 1 152280189 152280189 G C FLG Silent p.P2391P 0.33 TCGA-78-7155-01 1 152281867 152281867 G C FLG Missense_Mutation p.S1832W 0.39 possibly_damaging(0.854) TCGA-78-7155-01 1 152323648 152323648 C A FLG2 Missense_Mutation p.G2205V 0.38 possibly_damaging(0.834) TCGA-78-7155-01 1 152328422 152328422 C A FLG2 Missense_Mutation p.G614C 0.40 unknown(0) TCGA-78-7155-01 1 152732973 152732973 C G KPRP Silent p.P303P 0.26 TCGA-78-7155-01 1 152733137 152733137 G C KPRP Missense_Mutation p.G358A 0.42 tolerated(1) benign(0.006) TCGA-78-7155-01 1 153085207 153085207 C G SPRR2F Translation_Start_Site p.M1? 0.39 unknown(0) TCGA-78-7155-01 1 153122509 153122509 T A SPRR2G Silent p.P26P 0.38 TCGA-78-7155-01 1 153122550 153122550 G T SPRR2G Missense_Mutation p.Q13K 0.35 unknown(0) TCGA-78-7155-01 1 153309735 153309735 C G PGLYRP4 Missense_Mutation p.G289R 0.31 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 1 153617542 153617542 C T CHTOP Missense_Mutation p.R182W 0.37 tolerated(0.16) unknown(0) TCGA-78-7155-01 1 154920025 154920025 C A PBXIP1 Splice_Site p.X247_splice 0.38 TCGA-78-7155-01 1 155448036 155448036 T G ASH1L Missense_Mutation p.H1542P 0.37 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-78-7155-01 1 155838079 155838079 G T SYT11 Missense_Mutation p.D120Y 0.39 deleterious(0.04) possibly_damaging(0.547) TCGA-78-7155-01 1 156169978 156169978 G T SLC25A44 Missense_Mutation p.V114L 0.51 tolerated(0.09) possibly_damaging(0.462) TCGA-78-7155-01 1 156384451 156384451 G - C1orf61 Frame_Shift_Del p.R56Gfs*39 0.46 TCGA-78-7155-01 1 156779009 156779009 C A SH2D2A Missense_Mutation p.V340F 0.34 deleterious(0.01) benign(0.067) TCGA-78-7155-01 1 157772359 157772359 C A FCRL1 Missense_Mutation p.G139C 0.38 deleterious(0) probably_damaging(1) TCGA-78-7155-01 1 157772447 157772447 A G FCRL1 Silent p.P109P 0.36 TCGA-78-7155-01 1 158261039 158261039 C G CD1C Missense_Mutation p.D59E 0.33 tolerated(0.3) benign(0.001) TCGA-78-7155-01 1 158262139 158262139 G T CD1C Missense_Mutation p.M198I 0.36 deleterious(0.01) benign(0.006) TCGA-78-7155-01 1 158324271 158324271 G T CD1E Missense_Mutation p.G55C 0.45 deleterious(0.04) possibly_damaging(0.457) TCGA-78-7155-01 1 158324272 158324272 G T CD1E Missense_Mutation p.G55V 0.45 deleterious(0.03) possibly_damaging(0.508) TCGA-78-7155-01 1 158609374 158609374 C G SPTA1 Missense_Mutation p.E1660Q 0.38 tolerated(0.25) benign(0.01) TCGA-78-7155-01 1 158815556 158815556 A T MNDA Missense_Mutation p.K250N 0.29 deleterious(0) probably_damaging(1) TCGA-78-7155-01 1 158914788 158914788 C T PYHIN1 Missense_Mutation p.P439S 0.39 tolerated(0.1) benign(0.008) TCGA-78-7155-01 1 159166862 159166862 T A CADM3 Intron 0.27 TCGA-78-7155-01 1 159175667 159175667 G T DARC Silent p.L148L 0.30 TCGA-78-7155-01 1 159175851 159175855 GCCAC CCAA DARC Frame_Shift_Del p.A210Pfs*5 0.31 TCGA-78-7155-01 1 159283519 159283519 C A OR10J3 Missense_Mutation p.V311F 0.41 deleterious(0.03) benign(0.025) TCGA-78-7155-01 1 160057416 160057416 C A KCNJ9 Missense_Mutation p.P331T 0.33 deleterious(0) possibly_damaging(0.669) TCGA-78-7155-01 1 1607561 1607561 C A SLC35E2B Missense_Mutation p.A134S 0.96 tolerated(0.95) benign(0.006) TCGA-78-7155-01 1 161094313 161094313 C T NIT1 3'Flank 0.57 TCGA-78-7155-01 1 161193214 161193214 G A APOA2 Intron 0.38 TCGA-78-7155-01 1 161479826 161479826 C A FCGR2A Missense_Mutation p.T194K 0.36 tolerated(0.22) benign(0.102) TCGA-78-7155-01 1 162381686 162381686 A G SH2D1B Missense_Mutation p.C41R 0.25 deleterious(0) probably_damaging(1) TCGA-78-7155-01 1 164532548 164532548 G T PBX1 Missense_Mutation p.V89F 0.34 tolerated(0.54) possibly_damaging(0.673) TCGA-78-7155-01 1 167095752 167095752 C A DUSP27 Missense_Mutation p.H462N 0.46 deleterious(0) benign(0) TCGA-78-7155-01 1 167096456 167096456 G C DUSP27 Silent p.A696A 0.36 TCGA-78-7155-01 1 167096930 167096930 C A DUSP27 Nonsense_Mutation p.Y854* 0.55 TCGA-78-7155-01 1 167097651 167097651 T A DUSP27 Missense_Mutation p.S1095T 0.58 deleterious(0) benign(0.405) TCGA-78-7155-01 1 167407857 167407857 C A CD247 Missense_Mutation p.D84Y 0.39 deleterious(0) probably_damaging(0.986) TCGA-78-7155-01 1 16907943 16907943 C A NBPF1 Nonsense_Mutation p.E451* 0.10 TCGA-78-7155-01 1 169762469 169762469 C A METTL18 Missense_Mutation p.G123V 0.41 deleterious(0.04) benign(0.086) TCGA-78-7155-01 1 172431345 172431345 G T C1orf105 Missense_Mutation p.D101Y 0.45 deleterious(0.01) probably_damaging(0.934) TCGA-78-7155-01 1 172635266 172635266 G T FASLG 3'UTR 0.56 TCGA-78-7155-01 1 175046647 175046647 C T TNN Silent p.P31P 0.28 TCGA-78-7155-01 1 175335228 175335228 G T TNR Silent p.T700T 0.37 TCGA-78-7155-01 1 175360441 175360441 G C TNR Missense_Mutation p.S497W 0.39 deleterious(0) possibly_damaging(0.886) TCGA-78-7155-01 1 175957423 175957423 C A RFWD2 Splice_Site p.X658_splice 0.38 TCGA-78-7155-01 1 176563668 176563668 G T PAPPA2 Missense_Mutation p.D310Y 0.25 deleterious(0) probably_damaging(0.997) TCGA-78-7155-01 1 176852122 176852122 G A ASTN1 Silent p.L1079L 0.24 TCGA-78-7155-01 1 176903322 176903322 C G ASTN1 Silent p.R879R 0.41 TCGA-78-7155-01 1 176993767 176993767 G T ASTN1 Missense_Mutation p.L408I 0.46 deleterious(0.03) possibly_damaging(0.851) TCGA-78-7155-01 1 17708469 17708469 G A PADI6 RNA 0.07 TCGA-78-7155-01 1 179520525 179520525 A G NPHS2 Missense_Mutation p.L312P 0.48 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 1 180034295 180034295 C T CEP350 Missense_Mutation p.P1819S 0.23 possibly_damaging(0.902) TCGA-78-7155-01 1 181700366 181700366 C G CACNA1E Missense_Mutation p.L766V 0.50 tolerated(0.43) benign(0.364) TCGA-78-7155-01 1 181702613 181702613 G T CACNA1E Nonsense_Mutation p.G997* 0.19 TCGA-78-7155-01 1 182026788 182026788 T C ZNF648 Missense_Mutation p.S120G 0.46 tolerated(0.29) benign(0.002) TCGA-78-7155-01 1 185815179 185815179 C A HMCN1 Missense_Mutation p.T97N 0.56 probably_damaging(0.987) TCGA-78-7155-01 1 185939626 185939626 G T HMCN1 Splice_Site p.X791_splice 0.60 TCGA-78-7155-01 1 186062769 186062769 T - HMCN1 Frame_Shift_Del p.H3388Qfs*14 0.22 TCGA-78-7155-01 1 186088942 186088942 C G HMCN1 Missense_Mutation p.P4008A 0.23 probably_damaging(0.998) TCGA-78-7155-01 1 186143709 186143709 G T HMCN1 Missense_Mutation p.R5293I 0.59 probably_damaging(0.993) TCGA-78-7155-01 1 186901983 186901983 G T PLA2G4A Missense_Mutation p.G216V 0.20 deleterious(0) probably_damaging(0.969) TCGA-78-7155-01 1 190068145 190068145 C A BRINP3 Missense_Mutation p.C435F 0.48 deleterious(0) probably_damaging(0.991) TCGA-78-7155-01 1 190129960 190129960 A G BRINP3 Missense_Mutation p.I341T 0.14 deleterious(0) benign(0.054) TCGA-78-7155-01 1 19029612 19029612 C G PAX7 Missense_Mutation p.P326R 0.32 deleterious(0) probably_damaging(0.961) TCGA-78-7155-01 1 190424059 190424059 T A BRINP3 5'UTR 0.36 TCGA-78-7155-01 1 192335248 192335248 T G RGS21 Missense_Mutation p.F151L 0.55 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-78-7155-01 1 196311306 196311306 C A KCNT2 Missense_Mutation p.G486W 0.32 deleterious(0) probably_damaging(1) TCGA-78-7155-01 1 196928191 196928191 C A CFHR2 Missense_Mutation p.P265H 0.17 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 1 197073924 197073924 T C ASPM Missense_Mutation p.Y1486C 0.67 tolerated(0.09) benign(0.006) TCGA-78-7155-01 1 197091635 197091635 T A ASPM Missense_Mutation p.I1161L 0.46 deleterious(0.01) possibly_damaging(0.883) TCGA-78-7155-01 1 197407869 197407869 G T CRB1 Intron 0.38 TCGA-78-7155-01 1 19775401 19775401 C T CAPZB Intron 0.18 TCGA-78-7155-01 1 201013584 201013584 C A CACNA1S Missense_Mutation p.A1557S 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-78-7155-01 1 201845215 201845215 G T IPO9 3'UTR 0.59 TCGA-78-7155-01 1 203017722 203017722 G A PPFIA4 5'Flank 0.46 TCGA-78-7155-01 1 20305354 20305354 C G PLA2G2A 5'UTR 0.27 TCGA-78-7155-01 1 203055013 203055013 T A MYOG Missense_Mutation p.H26L 0.36 deleterious(0.03) benign(0.099) TCGA-78-7155-01 1 203134963 203134963 C A ADORA1 Missense_Mutation p.H306N 0.25 tolerated(0.08) benign(0.022) TCGA-78-7155-01 1 203144914 203144914 T A MYBPH 5'UTR 0.26 TCGA-78-7155-01 1 203452734 203452734 T C PRELP Missense_Mutation p.I141T 0.33 deleterious(0) benign(0.185) TCGA-78-7155-01 1 204128682 204128682 C G REN Silent p.T178T 0.31 TCGA-78-7155-01 1 204402453 204402453 T C PIK3C2B Missense_Mutation p.Y1315C 0.60 deleterious(0.01) possibly_damaging(0.702) TCGA-78-7155-01 1 208084384 208084384 C T CD34 Silent p.P14P 0.27 TCGA-78-7155-01 1 20810184 20810184 G T CAMK2N1 Missense_Mutation p.D65E 0.15 tolerated_low_confidence(0.57) probably_damaging(0.923) TCGA-78-7155-01 1 209803114 209803114 C T LAMB3 Missense_Mutation p.R367H 0.18 deleterious(0.03) probably_damaging(0.978) TCGA-78-7155-01 1 209879219 209879219 C G HSD11B1 Missense_Mutation p.A51G 0.58 deleterious(0) probably_damaging(0.998) TCGA-78-7155-01 1 21016807 21016807 G C KIF17 Missense_Mutation p.R419G 0.25 tolerated(0.08) benign(0.004) TCGA-78-7155-01 1 211280628 211280628 C A KCNH1 Missense_Mutation p.R57S 0.28 deleterious(0.02) probably_damaging(0.98) TCGA-78-7155-01 1 211526639 211526639 G T TRAF5 Missense_Mutation p.G20C 0.46 deleterious(0.01) possibly_damaging(0.741) TCGA-78-7155-01 1 212965257 212965257 G C TATDN3 5'UTR 0.76 TCGA-78-7155-01 1 215408333 215408333 G C KCNK2 Missense_Mutation p.E376Q 0.68 tolerated_low_confidence(0.13) benign(0.019) TCGA-78-7155-01 1 21586789 21586789 T C ECE1 Missense_Mutation p.K197R 0.26 deleterious(0.03) benign(0.093) TCGA-78-7155-01 1 216219883 216219883 A T USH2A Missense_Mutation p.L2072Q 0.93 possibly_damaging(0.541) TCGA-78-7155-01 1 216405386 216405386 C A USH2A Missense_Mutation p.G968C 0.83 probably_damaging(0.965) TCGA-78-7155-01 1 220101623 220101623 C G SLC30A10 Missense_Mutation p.G54R 0.85 deleterious(0) probably_damaging(0.997) TCGA-78-7155-01 1 228434381 228434381 G T OBSCN Missense_Mutation p.V1396L 0.78 possibly_damaging(0.883) TCGA-78-7155-01 1 228479742 228479742 A G OBSCN Missense_Mutation p.I3924V 0.86 benign(0.064) TCGA-78-7155-01 1 22903330 22903330 C A EPHA8 Nonsense_Mutation p.C260* 0.65 TCGA-78-7155-01 1 229622275 229622275 C A NUP133 Missense_Mutation p.G448V 0.78 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 1 229622276 229622276 C A NUP133 Splice_Site p.X448_splice 0.77 TCGA-78-7155-01 1 235324532 235324532 C T RBM34 Missense_Mutation p.E4K 0.86 tolerated_low_confidence(0.25) benign(0.01) TCGA-78-7155-01 1 236201413 236201413 C A NID1 Missense_Mutation p.V426F 0.72 deleterious(0) probably_damaging(0.92) TCGA-78-7155-01 1 236647200 236647200 G - EDARADD 3'Flank 0.48 TCGA-78-7155-01 1 237965165 237965165 C A RYR2 Silent p.S4700S 0.85 TCGA-78-7155-01 1 240255968 240255968 C T FMN2 Missense_Mutation p.H187Y 0.78 unknown(0) TCGA-78-7155-01 1 240975230 240975230 G T RGS7 Nonsense_Mutation p.S357* 0.80 TCGA-78-7155-01 1 241943305 241943305 G C WDR64 Splice_Site p.X836_splice 0.83 TCGA-78-7155-01 1 243349110 243349110 C A CEP170 Nonsense_Mutation p.E513* 0.75 TCGA-78-7155-01 1 247464180 247464180 C T ZNF496 Missense_Mutation p.G469R 0.91 deleterious(0.01) possibly_damaging(0.895) TCGA-78-7155-01 1 248636956 248636956 G T OR2T3 Missense_Mutation p.C102F 0.79 deleterious(0) probably_damaging(0.997) TCGA-78-7155-01 1 248637363 248637363 G T OR2T3 Missense_Mutation p.G238C 0.77 deleterious(0) probably_damaging(0.997) TCGA-78-7155-01 1 25701856 25701856 C A RHCE Silent p.T379T 0.21 TCGA-78-7155-01 1 27338968 27338968 C T FAM46B Missense_Mutation p.S65N 0.58 tolerated(0.59) benign(0.003) TCGA-78-7155-01 1 27950502 27950502 C A FGR Intron 0.18 TCGA-78-7155-01 1 28601354 28601354 C A SESN2 Missense_Mutation p.H347N 0.25 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 1 2938204 2938204 A G ACTRT2 5'UTR 0.74 TCGA-78-7155-01 1 33772993 33772993 G A A3GALT2 Nonsense_Mutation p.Q133* 0.25 TCGA-78-7155-01 1 34083116 34083116 G C CSMD2 Missense_Mutation p.P1937A 0.64 deleterious(0.04) possibly_damaging(0.842) TCGA-78-7155-01 1 34174850 34174850 C A CSMD2 Missense_Mutation p.G1099W 0.26 deleterious(0) probably_damaging(0.994) TCGA-78-7155-01 1 36809008 36809008 G C STK40 Missense_Mutation p.P349R 0.72 deleterious(0) probably_damaging(0.994) TCGA-78-7155-01 1 39876984 39876984 G A KIAA0754 Silent p.L213L 0.20 TCGA-78-7155-01 1 43783064 43783064 C A TIE1 Silent p.A868A 0.57 TCGA-78-7155-01 1 43783065 43783065 A T TIE1 Missense_Mutation p.I869F 0.56 deleterious(0) possibly_damaging(0.879) TCGA-78-7155-01 1 47279205 47279205 G A CYP4B1 Missense_Mutation p.D183N 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-78-7155-01 1 47904182 47904182 G T FOXD2 Silent p.L125L 0.31 TCGA-78-7155-01 1 4829947 4829947 C T AJAP1 Silent p.V288V 0.73 TCGA-78-7155-01 1 50572025 50572025 G T ELAVL4 Missense_Mutation p.R7M 0.49 deleterious_low_confidence(0.02) benign(0.013) TCGA-78-7155-01 1 55567332 55567332 C - USP24 Frame_Shift_Del p.L1691* 0.23 TCGA-78-7155-01 1 57538066 57538066 C A DAB1 Missense_Mutation p.V110F 0.58 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 1 6181567 6181567 G T CHD5 Missense_Mutation p.P1589H 0.20 deleterious_low_confidence(0.03) benign(0.258) TCGA-78-7155-01 1 6206398 6206398 C T CHD5 Missense_Mutation p.G559E 0.76 tolerated(0.19) benign(0.028) TCGA-78-7155-01 1 62739543 62739543 G T KANK4 Missense_Mutation p.D411E 0.56 deleterious(0.02) benign(0.223) TCGA-78-7155-01 1 63070530 63070530 C A ANGPTL3 3'UTR 0.53 TCGA-78-7155-01 1 65325846 65325846 C A JAK1 Missense_Mutation p.D426Y 0.20 deleterious(0) probably_damaging(0.979) TCGA-78-7155-01 1 67288201 67288201 C G WDR78 Splice_Site p.X780_splice 0.22 TCGA-78-7155-01 1 70493969 70493970 - AA LRRC7 Frame_Shift_Ins p.N600Kfs*11 0.41 TCGA-78-7155-01 1 72748003 72748003 T A NEGR1 Missense_Mutation p.R59W 0.61 deleterious(0.01) benign(0.263) TCGA-78-7155-01 1 75055736 75055736 G A C1orf173 Silent p.S585S 0.38 TCGA-78-7155-01 1 75114965 75114965 G T C1orf173 Missense_Mutation p.H20N 0.53 deleterious(0) probably_damaging(0.99) TCGA-78-7155-01 1 76199314 76199314 G T ACADM Splice_Site p.X133_splice 0.22 TCGA-78-7155-01 1 76211578 76211578 A T ACADM Silent p.P233P 0.60 TCGA-78-7155-01 1 76345744 76345744 G C MSH4 Missense_Mutation p.V563L 0.59 tolerated(0.8) benign(0.003) TCGA-78-7155-01 1 76345766 76345766 C G MSH4 Missense_Mutation p.T570R 0.19 deleterious(0) probably_damaging(0.995) TCGA-78-7155-01 1 76347015 76347015 G T MSH4 Missense_Mutation p.M622I 0.47 deleterious(0.01) possibly_damaging(0.574) TCGA-78-7155-01 1 76384776 76384776 T C ASB17 Missense_Mutation p.Y250C 0.17 deleterious(0) probably_damaging(0.926) TCGA-78-7155-01 1 77333351 77333351 G A ST6GALNAC5 5'UTR 0.14 TCGA-78-7155-01 1 77509947 77509947 A T ST6GALNAC5 Missense_Mutation p.H107L 0.24 benign(0.021) TCGA-78-7155-01 1 79101066 79101066 G T IFI44L Silent p.L256L 0.16 TCGA-78-7155-01 1 79107475 79107475 C G IFI44L Missense_Mutation p.A447G 0.49 tolerated(0.46) benign(0.035) TCGA-78-7155-01 1 82409307 82409307 G T LPHN2 Missense_Mutation p.G351V 0.24 tolerated(0.05) probably_damaging(0.999) TCGA-78-7155-01 1 82450266 82450266 G T LPHN2 Splice_Site p.X1078_splice 0.31 TCGA-78-7155-01 1 85655845 85655845 C A SYDE2 Missense_Mutation p.A446S 0.56 tolerated(0.11) benign(0.013) TCGA-78-7155-01 1 86904751 86904751 G - CLCA2 Frame_Shift_Del p.D389Tfs*18 0.20 TCGA-78-7155-01 1 87012922 87012922 T C CLCA4 Silent p.P40P 0.46 TCGA-78-7155-01 1 89575510 89575510 C A GBP2 Missense_Mutation p.M503I 0.14 tolerated(0.23) benign(0.012) TCGA-78-7155-01 1 89654327 89654327 A G GBP4 Missense_Mutation p.Y450H 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-78-7155-01 1 91182132 91182132 G T BARHL2 Nonsense_Mutation p.C207* 0.19 TCGA-78-7155-01 1 91866637 91866637 C G HFM1 Translation_Start_Site p.M1? 0.27 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-78-7155-01 1 92470805 92470805 A C BRDT Missense_Mutation p.K908N 0.55 tolerated(0.05) possibly_damaging(0.632) TCGA-78-7155-01 1 92528763 92528763 T A EPHX4 Missense_Mutation p.W337R 0.24 deleterious(0) probably_damaging(1) TCGA-78-7155-01 1 93201972 93201972 T A EVI5 Missense_Mutation p.K88N 0.58 deleterious(0) probably_damaging(0.998) TCGA-78-7155-01 1 93257926 93257926 G T EVI5 Missense_Mutation p.A9D 0.29 tolerated_low_confidence(0.13) benign(0.029) TCGA-78-7155-01 1 99771894 99771894 T A LPPR4 Silent p.T540T 0.59 TCGA-78-7155-01 20 1426310 1426310 C A NSFL1C Splice_Site p.X319_splice 0.11 TCGA-78-7155-01 20 14307564 14307564 C A FLRT3 Missense_Mutation p.G197C 0.69 deleterious(0) probably_damaging(0.949) TCGA-78-7155-01 20 16407825 16407825 C G KIF16B Silent p.V512V 0.71 TCGA-78-7155-01 20 1915365 1915365 C A SIRPA Missense_Mutation p.H411N 0.71 deleterious(0) possibly_damaging(0.775) TCGA-78-7155-01 20 20051508 20051508 A T C20orf26 Missense_Mutation p.N52Y 0.21 deleterious(0) probably_damaging(0.991) TCGA-78-7155-01 20 20350430 20350430 C G INSM1 Missense_Mutation p.R507G 0.12 deleterious(0) benign(0.25) TCGA-78-7155-01 20 22563685 22563685 G C FOXA2 Missense_Mutation p.S65R 0.63 deleterious(0.04) possibly_damaging(0.645) TCGA-78-7155-01 20 23016580 23016580 G A SSTR4 Missense_Mutation p.A154T 0.12 deleterious(0.01) benign(0.176) TCGA-78-7155-01 20 23017029 23017029 C G SSTR4 Missense_Mutation p.N303K 0.64 deleterious(0) probably_damaging(1) TCGA-78-7155-01 20 23334706 23334706 G A NXT1 Missense_Mutation p.V10M 0.13 deleterious(0) possibly_damaging(0.791) TCGA-78-7155-01 20 23856830 23856830 C G CST5 Missense_Mutation p.V142L 0.25 tolerated(0.26) benign(0.035) TCGA-78-7155-01 20 2411243 2411243 C A TGM6 Silent p.I610I 0.07 TCGA-78-7155-01 20 2473448 2473448 C A ZNF343 Silent p.V67V 0.68 TCGA-78-7155-01 20 2796440 2796440 C T C20orf141 3'UTR 0.10 TCGA-78-7155-01 20 2841496 2841496 C T VPS16 Missense_Mutation p.A206V 0.63 tolerated(0.26) benign(0.048) TCGA-78-7155-01 20 3147616 3147616 T C LZTS3 Missense_Mutation p.Q65R 0.60 tolerated(0.44) possibly_damaging(0.775) TCGA-78-7155-01 20 31805210 31805210 C G BPIFA3 5'UTR 0.88 TCGA-78-7155-01 20 32357894 32357894 A T ZNF341 Missense_Mutation p.Y466F 0.91 tolerated(0.14) possibly_damaging(0.635) TCGA-78-7155-01 20 35127691 35127691 C T DLGAP4 Missense_Mutation p.P686L 0.79 tolerated(0.63) benign(0) TCGA-78-7155-01 20 3559354 3559354 A T ATRN Missense_Mutation p.T827S 0.13 tolerated(0.09) probably_damaging(0.985) TCGA-78-7155-01 20 3653478 3653478 C A ADAM33 Missense_Mutation p.G401C 0.74 deleterious(0.03) probably_damaging(1) TCGA-78-7155-01 20 37150226 37150226 G C RALGAPB Missense_Mutation p.A502P 0.90 tolerated(0.38) benign(0.33) TCGA-78-7155-01 20 3842153 3842153 T C MAVS Splice_Site p.X155_splice 0.61 TCGA-78-7155-01 20 40049492 40049492 C A CHD6 Missense_Mutation p.R1928M 0.92 tolerated_low_confidence(0.08) benign(0.438) TCGA-78-7155-01 20 40979280 40979280 C T PTPRT Missense_Mutation p.G618E 0.82 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 20 44236654 44236654 T A WFDC9 3'UTR 0.91 TCGA-78-7155-01 20 47675016 47675016 G T CSE1L Missense_Mutation p.A6S 0.85 tolerated(0.69) benign(0.007) TCGA-78-7155-01 20 47990813 47990813 T A KCNB1 Missense_Mutation p.K428N 0.85 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 20 4850445 4850445 T A SLC23A2 Intron 0.71 TCGA-78-7155-01 20 48504475 48504475 G C SLC9A8 3'UTR 0.85 TCGA-78-7155-01 20 4864461 4864461 C A SLC23A2 Silent p.G217G 0.64 TCGA-78-7155-01 20 50406859 50406859 C G SALL4 Silent p.T721T 0.91 TCGA-78-7155-01 20 55929848 55929848 T A RAE1 Silent p.L57L 0.24 TCGA-78-7155-01 20 55929849 55929849 A T RAE1 Missense_Mutation p.I58F 0.24 deleterious(0.02) possibly_damaging(0.78) TCGA-78-7155-01 20 56188232 56188232 G A ZBP1 Silent p.V219V 0.87 TCGA-78-7155-01 20 57768318 57768318 G T ZNF831 Silent p.L748L 0.94 TCGA-78-7155-01 20 57828094 57828094 G A ZNF831 Silent p.K1363K 0.88 TCGA-78-7155-01 20 5939246 5939246 A G MCM8 Silent p.L221L 0.15 TCGA-78-7155-01 20 60509225 60509225 C A CDH4 Missense_Mutation p.P831T 0.89 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 20 60881371 60881372 - AGGCGG ADRM1 In_Frame_Ins 0.14 TCGA-78-7155-01 20 61833654 61833654 C A YTHDF1 Missense_Mutation p.E546D 0.39 tolerated(0.14) probably_damaging(0.986) TCGA-78-7155-01 20 61937381 61937381 G C COL20A1 Silent p.P162P 0.16 TCGA-78-7155-01 20 61941839 61941839 G C COL20A1 Missense_Mutation p.G457A 0.32 tolerated(0.35) possibly_damaging(0.51) TCGA-78-7155-01 20 61981848 61981848 G T CHRNA4 Silent p.L305L 0.33 TCGA-78-7155-01 20 62038193 62038193 G T KCNQ2 Missense_Mutation p.S808Y 0.38 deleterious(0) probably_damaging(1) TCGA-78-7155-01 20 62172823 62172823 A G SRMS Missense_Mutation p.V366A 0.39 deleterious(0) probably_damaging(0.931) TCGA-78-7155-01 20 62193511 62193511 C A HELZ2 Missense_Mutation p.G2148V 0.36 deleterious(0) possibly_damaging(0.548) TCGA-78-7155-01 20 62292793 62292793 C T RTEL1 Missense_Mutation p.P82L 0.25 tolerated(0.83) benign(0.008) TCGA-78-7155-01 20 62839650 62839650 G A MYT1 Silent p.S367S 0.33 TCGA-78-7155-01 20 62848565 62848565 C T MYT1 Nonsense_Mutation p.Q593* 0.37 TCGA-78-7155-01 20 8689329 8689329 G T PLCB1 Missense_Mutation p.A394S 0.67 deleterious(0) possibly_damaging(0.896) TCGA-78-7155-01 20 8717814 8717814 A T PLCB1 Missense_Mutation p.E728V 0.26 deleterious(0) possibly_damaging(0.692) TCGA-78-7155-01 20 8770180 8770180 G T PLCB1 Missense_Mutation p.M1098I 0.72 tolerated(1) benign(0.002) TCGA-78-7155-01 20 9402015 9402015 C A PLCB4 Silent p.P730P 0.17 TCGA-78-7155-01 20 9546915 9546915 G T PAK7 Missense_Mutation p.S369R 0.61 tolerated(0.3) benign(0.404) TCGA-78-7155-01 21 10944758 10944758 T A TPTE Missense_Mutation p.N159I 0.33 deleterious(0) probably_damaging(0.998) TCGA-78-7155-01 21 11021212 11021212 C G BAGE2 Splice_Site 0.11 TCGA-78-7155-01 21 17150265 17150265 G A USP25 Missense_Mutation p.R104K 0.88 tolerated(0.64) benign(0.14) TCGA-78-7155-01 21 28214257 28214257 G T ADAMTS1 Missense_Mutation p.T377N 0.86 deleterious(0) probably_damaging(1) TCGA-78-7155-01 21 28305285 28305285 C A ADAMTS5 Missense_Mutation p.A590S 0.96 tolerated(1) possibly_damaging(0.779) TCGA-78-7155-01 21 30547109 30547109 G C MAP3K7CL Missense_Mutation p.A209P 0.86 tolerated(0.21) possibly_damaging(0.897) TCGA-78-7155-01 21 37642320 37642320 C G DOPEY2 Missense_Mutation p.Q1833E 0.88 deleterious(0.01) probably_damaging(0.997) TCGA-78-7155-01 21 41446970 41446970 G T DSCAM Missense_Mutation p.L1628M 0.89 tolerated(0.05) probably_damaging(0.99) TCGA-78-7155-01 21 42767649 42767649 G T MX2 Missense_Mutation p.R336M 0.80 deleterious(0) possibly_damaging(0.559) TCGA-78-7155-01 21 45213224 45213224 G T RRP1 Missense_Mutation p.W100L 0.84 tolerated(0.18) possibly_damaging(0.773) TCGA-78-7155-01 21 45929249 45929249 C A TSPEAR Missense_Mutation p.W529C 0.91 deleterious(0) possibly_damaging(0.688) TCGA-78-7155-01 22 16256474 16256474 C A POTEH 3'UTR 0.25 TCGA-78-7155-01 22 16287400 16287400 G T POTEH Missense_Mutation p.D162E 0.32 tolerated(0.09) benign(0.314) TCGA-78-7155-01 22 18210074 18210076 AGA - BCL2L13 In_Frame_Del p.K412del 0.23 TCGA-78-7155-01 22 19203652 19203652 C A CLTCL1 Missense_Mutation p.V1012F 0.93 deleterious(0) probably_damaging(1) TCGA-78-7155-01 22 21329084 21329084 C A AIFM3 Nonsense_Mutation p.Y233* 0.97 TCGA-78-7155-01 22 23248767 23248767 G T IGLC3 Missense_Mutation p.S86I 0.72 probably_damaging(0.924) TCGA-78-7155-01 22 23438545 23438545 C A GNAZ Silent p.A221A 0.93 TCGA-78-7155-01 22 25753294 25753294 C - LRP5L Frame_Shift_Del p.W122Cfs*38 0.52 TCGA-78-7155-01 22 26294316 26294316 G T MYO18B Missense_Mutation p.A1571S 0.93 tolerated(0.16) possibly_damaging(0.474) TCGA-78-7155-01 22 26422693 26422693 G T MYO18B Silent p.S2251S 0.98 TCGA-78-7155-01 22 26692873 26692873 C A SEZ6L Missense_Mutation p.S330Y 0.91 deleterious(0.03) probably_damaging(1) TCGA-78-7155-01 22 26706660 26706660 C T SEZ6L Silent p.T513T 0.94 TCGA-78-7155-01 22 26747053 26747053 T A SEZ6L Missense_Mutation p.S815T 0.05 deleterious(0.04) benign(0.072) TCGA-78-7155-01 22 26887615 26887615 G T SRRD Nonsense_Mutation p.E333* 0.13 TCGA-78-7155-01 22 26936942 26936942 C A TPST2 Nonsense_Mutation p.E219* 0.24 TCGA-78-7155-01 22 28192875 28192875 C A MN1 Silent p.L1219L 0.92 TCGA-78-7155-01 22 28193258 28193258 C A MN1 Missense_Mutation p.G1092W 0.96 probably_damaging(0.997) TCGA-78-7155-01 22 29182289 29182289 G T CCDC117 Missense_Mutation p.S272I 0.86 tolerated(0.06) benign(0.045) TCGA-78-7155-01 22 29834927 29834927 A C RFPL1 Missense_Mutation p.K49N 0.85 tolerated(0.22) benign(0.147) TCGA-78-7155-01 22 30688566 30688566 C A TBC1D10A Missense_Mutation p.R449I 0.88 tolerated(0.14) benign(0) TCGA-78-7155-01 22 36556832 36556832 T C APOL3 Missense_Mutation p.I36M 0.84 benign(0.308) TCGA-78-7155-01 22 37334022 37334022 G T CSF2RB Silent p.G724G 0.82 TCGA-78-7155-01 22 37407135 37407135 C A TST Missense_Mutation p.W276L 0.36 deleterious(0) probably_damaging(0.996) TCGA-78-7155-01 22 38524306 38524306 G A PLA2G6 Nonsense_Mutation p.Q440* 0.45 TCGA-78-7155-01 22 39079772 39079772 A G TOMM22 Missense_Mutation p.I119V 0.39 tolerated(0.49) probably_damaging(0.981) TCGA-78-7155-01 22 40139884 40139884 G C ENTHD1 Missense_Mutation p.P542A 0.39 tolerated(0.08) benign(0.008) TCGA-78-7155-01 22 43898595 43898595 C A MPPED1 Missense_Mutation p.R274S 0.78 deleterious(0) probably_damaging(0.989) TCGA-78-7155-01 22 44131757 44131757 T A EFCAB6 Missense_Mutation p.L208F 0.82 deleterious(0.04) benign(0.007) TCGA-78-7155-01 22 45914600 45914600 G A FBLN1 Missense_Mutation p.G40R 0.25 deleterious(0) probably_damaging(0.995) TCGA-78-7155-01 22 51048240 51048240 G T MAPK8IP2 Intron 0.60 TCGA-78-7155-01 2 101924612 101924612 T A RNF149 Missense_Mutation p.T147S 0.27 tolerated(0.07) probably_damaging(0.951) TCGA-78-7155-01 2 101924613 101924613 G T RNF149 Silent p.I146I 0.27 TCGA-78-7155-01 2 103068359 103068359 A G IL18RAP Silent p.T506T 0.14 TCGA-78-7155-01 2 103334767 103334767 C A MFSD9 3'UTR 0.41 TCGA-78-7155-01 2 107040512 107040512 T A RGPD3 Missense_Mutation p.K1304M 0.15 tolerated(0.05) probably_damaging(0.98) TCGA-78-7155-01 2 107446683 107446683 G T ST6GAL2 Missense_Mutation p.P386Q 0.20 probably_damaging(1) TCGA-78-7155-01 2 108487786 108487786 G C RGPD4 Missense_Mutation p.C1109S 0.67 deleterious(0.01) possibly_damaging(0.831) TCGA-78-7155-01 2 110053474 110053474 G T SH3RF3 Missense_Mutation p.R567M 0.24 deleterious(0.01) probably_damaging(0.928) TCGA-78-7155-01 2 11052723 11052723 T A KCNF1 Silent p.A57A 0.15 TCGA-78-7155-01 2 113587908 113587908 C T IL1B 3'UTR 0.25 TCGA-78-7155-01 2 113742625 113742625 G T IL36G Nonstop_Mutation p.*170Lext*26 0.48 TCGA-78-7155-01 2 118704407 118704408 CT - CCDC93 Frame_Shift_Del p.R425Sfs*6 0.14 TCGA-78-7155-01 2 128408340 128408340 C A GPR17 Missense_Mutation p.L39M 0.24 tolerated(0.15) possibly_damaging(0.467) TCGA-78-7155-01 2 12880825 12880825 A T TRIB2 Missense_Mutation p.S313C 0.61 deleterious(0.01) benign(0.002) TCGA-78-7155-01 2 129025948 129025948 C A HS6ST1 Missense_Mutation p.D342Y 0.25 tolerated(0.14) probably_damaging(0.953) TCGA-78-7155-01 2 131975958 131975958 C G POTEE 5'UTR 0.54 TCGA-78-7155-01 2 131976074 131976074 C G POTEE Silent p.P33P 0.59 TCGA-78-7155-01 2 133426004 133426004 C A LYPD1 Missense_Mutation p.M53I 0.25 deleterious(0.01) possibly_damaging(0.679) TCGA-78-7155-01 2 133540099 133540099 C A NCKAP5 Missense_Mutation p.G1429W 0.55 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 2 133543015 133543015 G T NCKAP5 Missense_Mutation p.L457M 0.62 tolerated(0.13) benign(0.007) TCGA-78-7155-01 2 136467772 136467772 G T R3HDM1 Nonsense_Mutation p.E868* 0.22 TCGA-78-7155-01 2 136594312 136594312 C A LCT Missense_Mutation p.R143I 0.18 deleterious(0.03) possibly_damaging(0.515) TCGA-78-7155-01 2 137917812 137917812 G T THSD7B Missense_Mutation p.V467L 0.31 tolerated(0.43) benign(0.198) TCGA-78-7155-01 2 141027836 141027836 G T LRP1B Missense_Mutation p.P4408T 0.46 possibly_damaging(0.641) TCGA-78-7155-01 2 141128289 141128289 G T LRP1B Missense_Mutation p.N3666K 0.30 possibly_damaging(0.728) TCGA-78-7155-01 2 141298599 141298599 T - LRP1B Frame_Shift_Del p.R2486Efs*2 0.30 TCGA-78-7155-01 2 141473552 141473552 G T LRP1B Missense_Mutation p.P2005T 0.30 possibly_damaging(0.876) TCGA-78-7155-01 2 141526841 141526841 A C LRP1B Missense_Mutation p.M1900R 0.53 benign(0.042) TCGA-78-7155-01 2 143715246 143715246 A T KYNU Missense_Mutation p.N182Y 0.24 deleterious(0) benign(0.385) TCGA-78-7155-01 2 143798057 143798057 C G KYNU Missense_Mutation p.L368V 0.55 deleterious(0) possibly_damaging(0.697) TCGA-78-7155-01 2 145157187 145157187 T A ZEB2 Nonsense_Mutation p.K523* 0.25 TCGA-78-7155-01 2 145274875 145274875 G T ZEB2 Missense_Mutation p.R15S 0.53 deleterious(0) benign(0.002) TCGA-78-7155-01 2 1460007 1460007 G T TPO Missense_Mutation p.D258Y 0.65 deleterious(0) probably_damaging(0.994) TCGA-78-7155-01 2 149247151 149247151 C T MBD5 Missense_Mutation p.S1084F 0.34 deleterious_low_confidence(0.01) unknown(0) TCGA-78-7155-01 2 149247152 149247152 C T MBD5 Silent p.S1084S 0.34 TCGA-78-7155-01 2 15493719 15493719 G T NBAS Missense_Mutation p.S1349R 0.30 tolerated(0.08) benign(0.228) TCGA-78-7155-01 2 160294873 160294873 C A BAZ2B Missense_Mutation p.G412W 0.43 probably_damaging(0.965) TCGA-78-7155-01 2 166165749 166165749 C A SCN2A Missense_Mutation p.T227N 0.33 deleterious(0) possibly_damaging(0.786) TCGA-78-7155-01 2 166451578 166451578 G T CSRNP3 Translation_Start_Site p.M1? 0.33 deleterious(0) probably_damaging(0.922) TCGA-78-7155-01 2 166894413 166894413 G T SCN1A Missense_Mutation p.S940Y 0.25 deleterious(0) probably_damaging(0.998) TCGA-78-7155-01 2 168099742 168099742 G C XIRP2 Missense_Mutation p.V614L 0.31 probably_damaging(0.999) TCGA-78-7155-01 2 168101926 168101926 G T XIRP2 Missense_Mutation p.V1342L 0.27 possibly_damaging(0.754) TCGA-78-7155-01 2 168102750 168102750 G T XIRP2 Missense_Mutation p.R1616S 0.54 benign(0.073) TCGA-78-7155-01 2 168107960 168107960 G T XIRP2 Missense_Mutation p.R3353I 0.19 probably_damaging(0.923) TCGA-78-7155-01 2 169781190 169781190 C T ABCB11 Missense_Mutation p.A1248T 0.33 deleterious(0) possibly_damaging(0.858) TCGA-78-7155-01 2 170518868 170518868 A T CCDC173 Missense_Mutation p.N247K 0.37 tolerated(0.13) benign(0.424) TCGA-78-7155-01 2 170917604 170917604 G C UBR3 Missense_Mutation p.E1601Q 0.30 tolerated(0.35) benign(0.221) TCGA-78-7155-01 2 171225814 171225814 G T MYO3B Missense_Mutation p.V300F 0.44 tolerated(0.32) benign(0.035) TCGA-78-7155-01 2 175742768 175742768 C A CHN1 Missense_Mutation p.V117L 0.29 deleterious(0) probably_damaging(0.97) TCGA-78-7155-01 2 178705003 178705003 T A PDE11A Missense_Mutation p.Y492F 0.45 tolerated(0.27) probably_damaging(0.987) TCGA-78-7155-01 2 179408974 179408974 G T TTN Missense_Mutation p.S31994R 0.35 TCGA-78-7155-01 2 179435287 179435287 C A TTN Missense_Mutation p.G25191V 0.35 TCGA-78-7155-01 2 179441953 179441953 C A TTN Missense_Mutation p.V23037F 0.34 TCGA-78-7155-01 2 179598577 179598577 A G TTN Missense_Mutation p.L5180P 0.36 TCGA-78-7155-01 2 179613054 179613054 A G TTN Intron 0.36 TCGA-78-7155-01 2 179614488 179614488 G A TTN Intron 0.26 TCGA-78-7155-01 2 179629317 179629317 A G TTN Missense_Mutation p.Y3309H 0.53 TCGA-78-7155-01 2 179634420 179634420 G C TTN Missense_Mutation p.T2963S 0.47 TCGA-78-7155-01 2 179634423 179634423 G T TTN Missense_Mutation p.A2962D 0.49 TCGA-78-7155-01 2 179659128 179659128 G T TTN Missense_Mutation p.Q466K 0.36 TCGA-78-7155-01 2 179664219 179664219 C A TTN Silent p.P303P 0.52 TCGA-78-7155-01 2 180810056 180810056 T A CWC22 Missense_Mutation p.S843C 0.36 deleterious_low_confidence(0.05) benign(0.004) TCGA-78-7155-01 2 182543242 182543242 C G NEUROD1 Missense_Mutation p.G116R 0.35 deleterious(0) possibly_damaging(0.883) TCGA-78-7155-01 2 183129066 183129066 C T PDE1A Silent p.A59A 0.42 TCGA-78-7155-01 2 185802586 185802586 C A ZNF804A Silent p.P821P 0.23 TCGA-78-7155-01 2 185803269 185803269 G C ZNF804A Missense_Mutation p.C1049S 0.33 tolerated(0.63) benign(0.003) TCGA-78-7155-01 2 187604953 187604953 A C FAM171B Splice_Site p.X80_splice 0.52 TCGA-78-7155-01 2 187702221 187702221 A T ZSWIM2 Missense_Mutation p.S185R 0.41 tolerated(0.28) benign(0.015) TCGA-78-7155-01 2 189899755 189899755 C G COL5A2 Missense_Mutation p.D1414H 0.31 unknown(0) TCGA-78-7155-01 2 189923591 189923591 C A COL5A2 Missense_Mutation p.G705V 0.28 unknown(0) TCGA-78-7155-01 2 192701327 192701327 C A SDPR Silent p.V200V 0.33 TCGA-78-7155-01 2 196681586 196681586 T A DNAH7 Missense_Mutation p.K3176M 0.40 deleterious(0) probably_damaging(1) TCGA-78-7155-01 2 20173368 20173368 C A WDR35 Missense_Mutation p.D280Y 0.20 deleterious(0) possibly_damaging(0.653) TCGA-78-7155-01 2 20482713 20482713 G A PUM2 Missense_Mutation p.S572L 0.39 deleterious(0.03) benign(0.373) TCGA-78-7155-01 2 206548013 206548013 A G NRP2 5'UTR 0.45 TCGA-78-7155-01 2 206994966 206994966 C T NDUFS1 Silent p.R532R 0.27 TCGA-78-7155-01 2 207027041 207027041 C G EEF1B2 Intron 0.37 TCGA-78-7155-01 2 207621757 207621757 T C MDH1B Missense_Mutation p.Y93C 0.54 deleterious(0) probably_damaging(0.997) TCGA-78-7155-01 2 208461697 208461697 G A CREB1 Missense_Mutation p.R314K 0.41 deleterious(0) probably_damaging(0.995) TCGA-78-7155-01 2 208866251 208866251 C A PLEKHM3 Missense_Mutation p.G38V 0.39 deleterious(0) benign(0.305) TCGA-78-7155-01 2 208866252 208866252 C G PLEKHM3 Missense_Mutation p.G38R 0.40 deleterious(0) benign(0.023) TCGA-78-7155-01 2 208994375 208994375 G T CRYGC Silent p.G14G 0.40 TCGA-78-7155-01 2 20990127 20990127 T G C2orf43 Silent p.P62P 0.17 TCGA-78-7155-01 2 210640637 210640637 A G UNC80 Missense_Mutation p.N56D 0.36 possibly_damaging(0.879) TCGA-78-7155-01 2 211163245 211163271 GAATCACCTGTTCTGTCAAACAGGAGA - MYL1 In_Frame_Del p.L60_S68del 0.38 TCGA-78-7155-01 2 211465408 211465408 A C CPS1 Missense_Mutation p.K566T 0.49 tolerated(0.06) possibly_damaging(0.56) TCGA-78-7155-01 2 21228598 21228598 G T APOB Silent p.P3714P 0.60 TCGA-78-7155-01 2 21230918 21230918 G A APOB Missense_Mutation p.T2941I 0.55 benign(0.006) TCGA-78-7155-01 2 214174813 214174813 G T SPAG16 Missense_Mutation p.A104S 0.38 tolerated(0.74) benign(0.003) TCGA-78-7155-01 2 216262534 216262534 C G FN1 Missense_Mutation p.R1129P 0.40 deleterious(0) probably_damaging(0.951) TCGA-78-7155-01 2 216995607 216995607 A G XRCC5 Missense_Mutation p.Y316C 0.41 deleterious(0) probably_damaging(1) TCGA-78-7155-01 2 217234468 217234468 C G MARCH4 Missense_Mutation p.Q172H 0.44 deleterious(0.04) possibly_damaging(0.637) TCGA-78-7155-01 2 219692580 219692580 G T PRKAG3 Missense_Mutation p.Q266K 0.27 tolerated(0.08) benign(0.01) TCGA-78-7155-01 2 219890813 219890813 C A CCDC108 Silent p.R760R 0.29 TCGA-78-7155-01 2 220104998 220104998 G T GLB1L Missense_Mutation p.A154D 0.40 tolerated(0.12) benign(0.011) TCGA-78-7155-01 2 220164462 220164462 C T PTPRN Missense_Mutation p.E495K 0.08 tolerated(0.4) benign(0.401) TCGA-78-7155-01 2 220354191 220354191 C G SPEG Silent p.V2817V 0.06 TCGA-78-7155-01 2 220369964 220369964 G A GMPPA Missense_Mutation p.G212D 0.32 tolerated(0.41) benign(0.013) TCGA-78-7155-01 2 220435139 220435139 C A OBSL1 Missense_Mutation p.K272N 0.30 deleterious(0) probably_damaging(1) TCGA-78-7155-01 2 220476523 220476523 A T STK11IP Missense_Mutation p.T779S 0.30 tolerated(1) benign(0.001) TCGA-78-7155-01 2 226516290 226516290 G C NYAP2 3'UTR 0.07 TCGA-78-7155-01 2 227915763 227915763 C T COL4A4 Missense_Mutation p.G1027E 0.28 unknown(0) TCGA-78-7155-01 2 228243988 228243988 C A TM4SF20 5'UTR 0.45 TCGA-78-7155-01 2 228882198 228882198 G A SPHKAP Silent p.S1124S 0.41 TCGA-78-7155-01 2 228884135 228884135 T G SPHKAP Missense_Mutation p.T479P 0.40 tolerated(0.12) possibly_damaging(0.616) TCGA-78-7155-01 2 231407695 231407695 A T SP100 3'UTR 0.29 TCGA-78-7155-01 2 233201200 233201200 G C DIS3L2 Missense_Mutation p.V840L 0.53 tolerated(0.07) possibly_damaging(0.452) TCGA-78-7155-01 2 233245182 233245182 C G ALPP Missense_Mutation p.P282R 0.05 deleterious(0.03) benign(0.006) TCGA-78-7155-01 2 233274040 233274040 A C ALPPL2 Splice_Site p.X395_splice 0.31 TCGA-78-7155-01 2 234851361 234851361 G T TRPM8 Missense_Mutation p.R223L 0.32 deleterious(0) probably_damaging(0.997) TCGA-78-7155-01 2 237489245 237489245 C A ACKR3 Missense_Mutation p.T46K 0.63 tolerated(0.06) benign(0.174) TCGA-78-7155-01 2 237489334 237489334 G A ACKR3 Missense_Mutation p.G76S 0.37 tolerated(0.12) possibly_damaging(0.849) TCGA-78-7155-01 2 238262032 238262032 A T COL6A3 Silent p.G2214G 0.39 TCGA-78-7155-01 2 238283063 238283063 G T COL6A3 Missense_Mutation p.P1224Q 0.39 possibly_damaging(0.677) TCGA-78-7155-01 2 238303671 238303671 C A COL6A3 Nonsense_Mutation p.E90* 0.53 TCGA-78-7155-01 2 241537463 241537463 A C CAPN10 Silent p.T634T 0.07 TCGA-78-7155-01 2 241724429 241724429 C A KIF1A Nonsense_Mutation p.E233* 0.36 TCGA-78-7155-01 2 24522911 24522911 C A ITSN2 Missense_Mutation p.W404L 0.22 tolerated(0.19) unknown(0) TCGA-78-7155-01 2 25064493 25064493 C A ADCY3 Missense_Mutation p.A334S 0.15 tolerated(0.53) benign(0.027) TCGA-78-7155-01 2 27322662 27322662 G T CGREF1 3'Flank 0.50 TCGA-78-7155-01 2 27430140 27430140 T A SLC5A6 Missense_Mutation p.T127S 0.29 tolerated(0.14) possibly_damaging(0.57) TCGA-78-7155-01 2 27699522 27699522 T C IFT172 Missense_Mutation p.K466R 0.32 tolerated(0.19) benign(0.074) TCGA-78-7155-01 2 27712552 27712552 C T IFT172 5'UTR 0.64 TCGA-78-7155-01 2 29443605 29443605 G C ALK Silent p.L1204L 0.38 TCGA-78-7155-01 2 29474108 29474108 C A ALK Silent p.G689G 0.39 TCGA-78-7155-01 2 32474721 32474721 G T NLRC4 Missense_Mutation p.L738M 0.33 tolerated(0.05) possibly_damaging(0.817) TCGA-78-7155-01 2 32474722 32474722 G T NLRC4 Missense_Mutation p.N737K 0.32 tolerated(0.43) benign(0.118) TCGA-78-7155-01 2 33246008 33246008 A T LTBP1 Missense_Mutation p.M200L 0.26 tolerated(0.19) possibly_damaging(0.907) TCGA-78-7155-01 2 37406604 37406604 G T SULT6B1 Missense_Mutation p.Q138K 0.45 tolerated(1) benign(0.01) TCGA-78-7155-01 2 3743442 3743442 G T ALLC Missense_Mutation p.G216V 0.37 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 2 44100976 44100976 G C ABCG8 Missense_Mutation p.G421A 0.42 tolerated(0.33) benign(0.068) TCGA-78-7155-01 2 44457644 44457644 A T PPM1B Missense_Mutation p.Q409H 0.50 tolerated_low_confidence(0.59) benign(0) TCGA-78-7155-01 2 45169558 45169558 C G SIX3 Missense_Mutation p.I105M 0.71 deleterious(0.03) possibly_damaging(0.459) TCGA-78-7155-01 2 49190604 49190604 G T FSHR Silent p.A452A 0.24 TCGA-78-7155-01 2 49381474 49381474 C A FSHR Missense_Mutation p.R28M 0.43 tolerated(0.11) benign(0.006) TCGA-78-7155-01 2 50170875 50170875 T A NRXN1 Missense_Mutation p.I1435F 0.53 tolerated(0.13) possibly_damaging(0.577) TCGA-78-7155-01 2 50318579 50318579 A G NRXN1 Silent p.I1240I 0.47 TCGA-78-7155-01 2 50318602 50318602 C A NRXN1 Missense_Mutation p.V1233F 0.27 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 2 50779845 50779845 C A NRXN1 Missense_Mutation p.D587Y 0.61 deleterious(0) probably_damaging(0.996) TCGA-78-7155-01 2 50850543 50850543 G C NRXN1 Nonsense_Mutation p.S381* 0.04 TCGA-78-7155-01 2 51254659 51254659 G T NRXN1 Silent p.R251R 0.49 TCGA-78-7155-01 2 55921012 55921012 A T PNPT1 5'UTR 0.59 TCGA-78-7155-01 2 61333783 61333783 G T KIAA1841 Missense_Mutation p.G533W 0.43 deleterious(0) probably_damaging(0.949) TCGA-78-7155-01 2 67637276 67637276 A G ETAA1 3'UTR 0.47 TCGA-78-7155-01 2 71576910 71576910 G T ZNF638 Missense_Mutation p.G276C 0.38 deleterious(0.03) possibly_damaging(0.741) TCGA-78-7155-01 2 73826635 73826635 G T ALMS1 Missense_Mutation p.K3884N 0.19 probably_damaging(0.999) TCGA-78-7155-01 2 74043870 74043870 G A C2orf78 Silent p.K840K 0.43 TCGA-78-7155-01 2 74654377 74654377 C T RTKN Missense_Mutation p.E427K 0.34 tolerated(0.09) probably_damaging(0.935) TCGA-78-7155-01 2 74784174 74784174 G T DOK1 Missense_Mutation p.S460I 0.43 deleterious_low_confidence(0.04) benign(0.08) TCGA-78-7155-01 2 77746229 77746229 G T LRRTM4 Missense_Mutation p.H256N 0.29 deleterious(0) benign(0.245) TCGA-78-7155-01 2 79253836 79253836 C A REG3G Intron 0.32 TCGA-78-7155-01 2 79253911 79253911 C A REG3G Missense_Mutation p.P50H 0.35 tolerated(0.82) benign(0) TCGA-78-7155-01 2 79314749 79314749 A T REG1B 5'UTR 0.18 TCGA-78-7155-01 2 79348029 79348029 G T REG1A Silent p.L14L 0.49 TCGA-78-7155-01 2 79384420 79384420 C A REG3A Splice_Site p.X154_splice 0.51 TCGA-78-7155-01 2 79384806 79384806 C T REG3A Missense_Mutation p.E118K 0.37 tolerated(0.05) benign(0.04) TCGA-78-7155-01 2 79971607 79971607 A T CTNNA2 Missense_Mutation p.Q66L 0.27 deleterious(0.04) benign(0.014) TCGA-78-7155-01 2 85923143 85923143 C G GNLY Silent p.V73V 0.39 TCGA-78-7155-01 2 89292382 89292382 G T IGKV1-8 Missense_Mutation p.Q6K 0.37 deleterious(0.02) benign(0.109) TCGA-78-7155-01 2 89952927 89952927 G T IGKV1D-33 Missense_Mutation p.W16L 0.27 deleterious(0.04) benign(0.048) TCGA-78-7155-01 2 89986393 89986393 G T IGKV2D-29 Missense_Mutation p.W14C 0.39 deleterious(0.05) benign(0.17) TCGA-78-7155-01 2 90249391 90249391 C - IGKV1D-43 Frame_Shift_Del p.P117del 0.29 TCGA-78-7155-01 2 90259821 90259821 G T IGKV1D-8 Missense_Mutation p.W16C 0.34 tolerated(0.08) benign(0.168) TCGA-78-7155-01 2 95497764 95497764 C A ANKRD20A8P RNA 0.26 TCGA-78-7155-01 2 96798378 96798378 C A ASTL Missense_Mutation p.V180F 0.40 deleterious(0) probably_damaging(0.974) TCGA-78-7155-01 2 96993095 96993095 C - ITPRIPL1 Frame_Shift_Del p.P252Hfs*10 0.26 TCGA-78-7155-01 2 98392311 98392311 T G TMEM131 Missense_Mutation p.K1439Q 0.41 deleterious_low_confidence(0.01) benign(0.122) TCGA-78-7155-01 2 99443583 99443583 C T KIAA1211L Missense_Mutation p.R197Q 0.29 tolerated(0.27) benign(0.417) TCGA-78-7155-01 3 100621464 100621464 G T ABI3BP Nonsense_Mutation p.S116* 0.39 TCGA-78-7155-01 3 101047391 101047391 C A SENP7 Splice_Site p.X932_splice 0.24 TCGA-78-7155-01 3 10392241 10392241 C A ATP2B2 Missense_Mutation p.K719N 0.89 deleterious(0.04) possibly_damaging(0.688) TCGA-78-7155-01 3 105495359 105495359 G C CBLB Missense_Mutation p.I149M 0.25 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 3 107096857 107096857 A G CCDC54 Silent p.T141T 0.21 TCGA-78-7155-01 3 108363525 108363525 G T DZIP3 Missense_Mutation p.E552D 0.30 deleterious_low_confidence(0.05) benign(0.168) TCGA-78-7155-01 3 111343206 111343206 G T CD96 Missense_Mutation p.G442C 0.55 deleterious(0.01) possibly_damaging(0.65) TCGA-78-7155-01 3 111845856 111845856 C A GCSAM Missense_Mutation p.K58N 0.35 tolerated(0.11) benign(0.295) TCGA-78-7155-01 3 113125860 113125860 C T WDR52 Missense_Mutation p.G307S 0.53 deleterious(0) probably_damaging(0.985) TCGA-78-7155-01 3 113563455 113563455 G T GRAMD1C Missense_Mutation p.G45W 0.54 deleterious_low_confidence(0.01) possibly_damaging(0.789) TCGA-78-7155-01 3 113955588 113955588 T C ZNF80 Missense_Mutation p.K112E 0.39 deleterious(0.02) probably_damaging(0.985) TCGA-78-7155-01 3 114018486 114018486 C A TIGIT Missense_Mutation p.A145D 0.21 deleterious(0.01) probably_damaging(0.921) TCGA-78-7155-01 3 114070047 114070047 T G ZBTB20 Missense_Mutation p.E293A 0.69 deleterious_low_confidence(0.01) benign(0.037) TCGA-78-7155-01 3 115561343 115561343 C T LSAMP Silent p.V244V 0.52 TCGA-78-7155-01 3 118623535 118623535 T A IGSF11 Missense_Mutation p.N272Y 0.16 deleterious(0.02) benign(0.299) TCGA-78-7155-01 3 118623538 118623538 T C IGSF11 Missense_Mutation p.K271E 0.74 deleterious(0) benign(0.345) TCGA-78-7155-01 3 119336897 119336897 G T PLA1A Missense_Mutation p.R262S 0.66 deleterious(0) probably_damaging(1) TCGA-78-7155-01 3 120500084 120500084 G T GTF2E1 Missense_Mutation p.D363Y 0.55 deleterious(0.02) possibly_damaging(0.744) TCGA-78-7155-01 3 121151258 121151258 G A POLQ Nonsense_Mutation p.Q2556* 0.56 TCGA-78-7155-01 3 121643199 121643199 G C SLC15A2 Missense_Mutation p.G335A 0.25 deleterious(0.01) probably_damaging(0.934) TCGA-78-7155-01 3 121822511 121822511 G T CD86 Nonsense_Mutation p.E73* 0.19 TCGA-78-7155-01 3 121976194 121976194 C A CASR Missense_Mutation p.T151K 0.54 deleterious(0) probably_damaging(0.991) TCGA-78-7155-01 3 123987871 123987871 G T KALRN Missense_Mutation p.E244D 0.58 tolerated(0.67) benign(0.029) TCGA-78-7155-01 3 124356145 124356145 A C KALRN Missense_Mutation p.K189Q 0.54 deleterious(0.01) probably_damaging(0.94) TCGA-78-7155-01 3 124356147 124356147 G T KALRN Missense_Mutation p.K189N 0.54 deleterious(0) probably_damaging(0.919) TCGA-78-7155-01 3 124461062 124461062 A T UMPS Missense_Mutation p.M408L 0.46 tolerated(0.33) benign(0.002) TCGA-78-7155-01 3 124646687 124646687 G T MUC13 Missense_Mutation p.P68H 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-78-7155-01 3 124746174 124746174 A T HEG1 Missense_Mutation p.L263H 0.70 tolerated_low_confidence(0.2) benign(0.007) TCGA-78-7155-01 3 125844477 125844477 C A ALDH1L1 Silent p.V604V 0.20 TCGA-78-7155-01 3 128345673 128345673 C G RPN1 Missense_Mutation p.D347H 0.25 deleterious(0) probably_damaging(0.992) TCGA-78-7155-01 3 130188172 130188172 G T COL6A5 Missense_Mutation p.V2442L 0.31 deleterious(0) probably_damaging(0.993) TCGA-78-7155-01 3 130284285 130284285 C T COL6A6 Missense_Mutation p.A370V 0.33 deleterious(0.02) possibly_damaging(0.869) TCGA-78-7155-01 3 131181700 131181700 G A MRPL3 Missense_Mutation p.P305L 0.58 deleterious(0.01) possibly_damaging(0.884) TCGA-78-7155-01 3 131208896 131208896 C A MRPL3 Missense_Mutation p.R166L 0.45 deleterious(0.01) benign(0.081) TCGA-78-7155-01 3 133485178 133485178 C A TF Missense_Mutation p.L463M 0.32 deleterious(0.01) possibly_damaging(0.898) TCGA-78-7155-01 3 13401954 13401954 C A NUP210 Missense_Mutation p.G657V 0.70 deleterious(0.01) probably_damaging(0.996) TCGA-78-7155-01 3 134967287 134967287 A C EPHB1 Missense_Mutation p.N876H 0.19 deleterious(0.03) probably_damaging(0.915) TCGA-78-7155-01 3 137843458 137843458 C A A4GNT Missense_Mutation p.G224V 0.18 deleterious(0) probably_damaging(1) TCGA-78-7155-01 3 138738889 138738889 A G PRR23B Silent p.S205S 0.27 TCGA-78-7155-01 3 139087022 139087022 C T COPB2 Missense_Mutation p.G504R 0.18 tolerated(0.48) benign(0.03) TCGA-78-7155-01 3 139098004 139098004 C T COPB2 Silent p.Q80Q 0.31 TCGA-78-7155-01 3 139098005 139098005 T A COPB2 Missense_Mutation p.Q80L 0.31 tolerated(0.18) benign(0.005) TCGA-78-7155-01 3 140185544 140185544 C A CLSTN2 Missense_Mutation p.P439T 0.27 deleterious(0) probably_damaging(0.998) TCGA-78-7155-01 3 140251199 140251199 A T CLSTN2 Missense_Mutation p.N460Y 0.52 deleterious(0) probably_damaging(0.996) TCGA-78-7155-01 3 141272715 141272715 G T RASA2 Missense_Mutation p.G182W 0.26 deleterious(0) probably_damaging(0.947) TCGA-78-7155-01 3 142232433 142232433 C T ATR Missense_Mutation p.M1517I 0.26 tolerated(1) benign(0.004) TCGA-78-7155-01 3 142281082 142281082 C T ATR Missense_Mutation p.D388N 0.15 tolerated_low_confidence(0.36) benign(0) TCGA-78-7155-01 3 145924363 145924363 C A PLSCR4 Missense_Mutation p.G102W 0.47 deleterious(0.01) probably_damaging(0.926) TCGA-78-7155-01 3 145924375 145924375 T A PLSCR4 Missense_Mutation p.T98S 0.29 tolerated(0.92) benign(0.003) TCGA-78-7155-01 3 146318153 146318153 T A PLSCR5 Silent p.A37A 0.25 TCGA-78-7155-01 3 147108855 147108855 C A ZIC4 Silent p.G339G 0.21 TCGA-78-7155-01 3 147131139 147131139 A C ZIC1 Splice_Site p.X383_splice 0.16 TCGA-78-7155-01 3 149470067 149470067 G A COMMD2 Silent p.A25A 0.60 TCGA-78-7155-01 3 150931951 150931951 T C P2RY14 Missense_Mutation p.S52G 0.53 deleterious(0) possibly_damaging(0.676) TCGA-78-7155-01 3 150931952 150931952 G T P2RY14 Silent p.P51P 0.54 TCGA-78-7155-01 3 151105894 151105894 C T MED12L Silent p.T1760T 0.55 TCGA-78-7155-01 3 164907028 164907028 G C SLITRK3 Missense_Mutation p.R531G 0.23 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 3 167319990 167319990 C A WDR49 Missense_Mutation p.W59C 0.22 deleterious(0.01) probably_damaging(0.935) TCGA-78-7155-01 3 167747580 167747580 T A GOLIM4 Missense_Mutation p.Q474L 0.44 deleterious(0.03) benign(0.185) TCGA-78-7155-01 3 170009707 170009707 A T PRKCI Missense_Mutation p.E423D 0.48 deleterious(0) probably_damaging(0.979) TCGA-78-7155-01 3 170858288 170858289 CG - TNIK Frame_Shift_Del p.K413Gfs*15 0.17 TCGA-78-7155-01 3 171406666 171406666 C A PLD1 Missense_Mutation p.V447L 0.29 deleterious(0) probably_damaging(0.992) TCGA-78-7155-01 3 173999053 173999053 C A NLGN1 Missense_Mutation p.P811H 0.63 deleterious_low_confidence(0.01) probably_damaging(0.95) TCGA-78-7155-01 3 175184802 175184802 G T NAALADL2 Missense_Mutation p.A455S 0.21 tolerated(0.75) benign(0.011) TCGA-78-7155-01 3 178525147 178525147 T G KCNMB2 5'UTR 0.29 TCGA-78-7155-01 3 180324138 180324138 G A TTC14 Missense_Mutation p.A343T 0.27 deleterious(0) probably_damaging(0.998) TCGA-78-7155-01 3 181430578 181430578 G C SOX2 Missense_Mutation p.G144R 0.32 tolerated(0.06) benign(0.317) TCGA-78-7155-01 3 183014772 183014772 C T MCF2L2 Missense_Mutation p.D497N 0.17 deleterious(0.02) probably_damaging(0.936) TCGA-78-7155-01 3 183696421 183696421 C A ABCC5 Missense_Mutation p.R389L 0.23 deleterious(0) benign(0.224) TCGA-78-7155-01 3 183896818 183896818 A G AP2M1 Missense_Mutation p.Y83C 0.31 deleterious(0.02) possibly_damaging(0.847) TCGA-78-7155-01 3 183899836 183899836 G A AP2M1 Splice_Site p.X321_splice 0.18 TCGA-78-7155-01 3 184045040 184045040 A T EIF4G1 Silent p.G1162G 0.28 TCGA-78-7155-01 3 184801010 184801010 G T C3orf70 Missense_Mutation p.H180N 0.52 deleterious_low_confidence(0.01) benign(0.01) TCGA-78-7155-01 3 186257313 186257313 G T CRYGS Missense_Mutation p.T32K 0.29 tolerated(0.05) benign(0.021) TCGA-78-7155-01 3 186457126 186457126 G A KNG1 Missense_Mutation p.D350N 0.29 tolerated(0.55) benign(0.006) TCGA-78-7155-01 3 187416361 187416361 C A RTP2 Missense_Mutation p.W201C 0.57 deleterious(0) probably_damaging(0.993) TCGA-78-7155-01 3 190147424 190147424 C G TMEM207 Missense_Mutation p.G134A 0.67 deleterious(0) possibly_damaging(0.719) TCGA-78-7155-01 3 190936625 190936625 T A OSTN Silent p.L64L 0.33 TCGA-78-7155-01 3 191093119 191093119 C G CCDC50 Silent p.P239P 0.31 TCGA-78-7155-01 3 19479673 19479673 G T KCNH8 Nonsense_Mutation p.G399* 0.86 TCGA-78-7155-01 3 195594441 195594441 G A TNK2 Missense_Mutation p.P973S 0.22 tolerated_low_confidence(0.07) possibly_damaging(0.883) TCGA-78-7155-01 3 196434644 196434644 C A CEP19 Missense_Mutation p.M94I 0.55 tolerated(0.2) benign(0.167) TCGA-78-7155-01 3 196547287 196547287 G C PAK2 Missense_Mutation p.R400P 0.55 deleterious(0) probably_damaging(1) TCGA-78-7155-01 3 197618359 197618359 C T IQCG Silent p.K385K 0.41 TCGA-78-7155-01 3 27233735 27233735 T A NEK10 Splice_Site p.X764_splice 0.34 TCGA-78-7155-01 3 36897117 36897117 C A TRANK1 Missense_Mutation p.G1322W 0.87 deleterious(0) probably_damaging(1) TCGA-78-7155-01 3 36897470 36897470 T A TRANK1 Missense_Mutation p.Q1204L 0.90 deleterious(0) probably_damaging(0.997) TCGA-78-7155-01 3 37170591 37170591 T A LRRFIP2 Missense_Mutation p.D47V 0.82 deleterious(0) possibly_damaging(0.77) TCGA-78-7155-01 3 37458927 37458927 G T C3orf35 Missense_Mutation p.G57V 0.85 deleterious_low_confidence(0.01) probably_damaging(0.947) TCGA-78-7155-01 3 38266060 38266060 A G OXSR1 Splice_Site p.X235_splice 0.88 TCGA-78-7155-01 3 38592067 38592067 C A SCN5A Silent p.A1932A 0.78 TCGA-78-7155-01 3 38766770 38766770 G T SCN10A Missense_Mutation p.D1041E 0.90 tolerated(0.44) benign(0.155) TCGA-78-7155-01 3 39452644 39452644 C A RPSA Intron 0.84 TCGA-78-7155-01 3 419519 419519 T A CHL1 Silent p.A590A 0.91 TCGA-78-7155-01 3 433372 433372 A T CHL1 Missense_Mutation p.T936S 0.83 tolerated(0.48) benign(0.007) TCGA-78-7155-01 3 44488673 44488673 C A ZNF445 Missense_Mutation p.E830D 0.82 deleterious(0.05) unknown(0) TCGA-78-7155-01 3 447347 447347 G A CHL1 Missense_Mutation p.V1210I 0.83 tolerated(0.06) possibly_damaging(0.693) TCGA-78-7155-01 3 47890012 47890012 C T DHX30 Silent p.D849D 0.30 TCGA-78-7155-01 3 49148462 49148462 C A USP19 Missense_Mutation p.A1154S 0.85 tolerated(0.1) benign(0.348) TCGA-78-7155-01 3 50338129 50338129 C T HYAL1 Missense_Mutation p.G365S 0.83 tolerated(0.31) benign(0.018) TCGA-78-7155-01 3 51979203 51979203 C A PARP3 Missense_Mutation p.S282Y 0.76 deleterious(0) possibly_damaging(0.869) TCGA-78-7155-01 3 58140568 58140568 G T FLNB Missense_Mutation p.A2260S 0.89 tolerated(0.36) probably_damaging(1) TCGA-78-7155-01 3 58191195 58191195 T G DNASE1L3 Intron 0.40 TCGA-78-7155-01 3 62860663 62860663 G C CADPS Missense_Mutation p.I14M 0.78 tolerated_low_confidence(0.06) unknown(0) TCGA-78-7155-01 3 69058943 69058943 G C EOGT Missense_Mutation p.Q19E 0.86 tolerated_low_confidence(1) benign(0.431) TCGA-78-7155-01 3 69168080 69168080 G A LMOD3 Missense_Mutation p.P476S 0.74 deleterious(0.05) benign(0.006) TCGA-78-7155-01 3 73657747 73657747 A G PDZRN3 Splice_Site p.X270_splice 0.62 TCGA-78-7155-01 3 7494358 7494358 C T GRM7 Silent p.D413D 0.79 TCGA-78-7155-01 3 89390085 89390085 C A EPHA3 Nonsense_Mutation p.Y278* 0.80 TCGA-78-7155-01 3 93603583 93603583 T G PROS1 Missense_Mutation p.H494P 0.24 deleterious(0.01) benign(0.053) TCGA-78-7155-01 3 95374103 95374103 C A MTHFD2P1 RNA 0.47 TCGA-78-7155-01 3 99514012 99514012 G A COL8A1 Missense_Mutation p.G423R 0.28 deleterious(0) unknown(0) TCGA-78-7155-01 4 100443707 100443707 G - C4orf17 Frame_Shift_Del p.G60Efs*12 0.32 TCGA-78-7155-01 4 107092362 107092362 T A TBCK Missense_Mutation p.T709S 0.28 tolerated(0.06) possibly_damaging(0.574) TCGA-78-7155-01 4 1079701 1079701 C G RNF212 Missense_Mutation p.Q115H 0.26 deleterious(0) probably_damaging(0.976) TCGA-78-7155-01 4 108991910 108991910 C A LEF1 Missense_Mutation p.R342L 0.40 deleterious(0) probably_damaging(1) TCGA-78-7155-01 4 111441523 111441523 G A ENPEP Splice_Site p.X576_splice 0.36 TCGA-78-7155-01 4 114274342 114274342 C A ANK2 Missense_Mutation p.T1523K 0.35 possibly_damaging(0.879) TCGA-78-7155-01 4 114276758 114276758 A T ANK2 Silent p.T2328T 0.39 TCGA-78-7155-01 4 115773944 115773944 A G NDST4 Missense_Mutation p.W585R 0.31 deleterious(0) probably_damaging(0.979) TCGA-78-7155-01 4 123193425 123193425 C T KIAA1109 Nonsense_Mutation p.Q2771* 0.42 TCGA-78-7155-01 4 123663745 123663745 A T BBS12 Missense_Mutation p.H233L 0.38 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 4 126372061 126372061 G T FAT4 Missense_Mutation p.R3297L 0.50 possibly_damaging(0.862) TCGA-78-7155-01 4 126372442 126372446 CCTTT AA FAT4 In_Frame_Del p.T3424_F3425delinsK 0.30 TCGA-78-7155-01 4 126397370 126397370 A T FAT4 Silent p.P4084P 0.45 TCGA-78-7155-01 4 126408613 126408613 G A FAT4 Silent p.G4310G 0.23 TCGA-78-7155-01 4 126408659 126408659 A G FAT4 Missense_Mutation p.R4326G 0.30 benign(0.243) TCGA-78-7155-01 4 128608933 128608933 C T INTU Missense_Mutation p.P454S 0.41 tolerated(0.2) benign(0.021) TCGA-78-7155-01 4 134073585 134073585 G T PCDH10 Missense_Mutation p.G764C 0.25 tolerated(0.2) possibly_damaging(0.522) TCGA-78-7155-01 4 13544065 13544065 C A NKX3-2 Missense_Mutation p.G185V 0.73 tolerated(0.13) benign(0.122) TCGA-78-7155-01 4 13602333 13602333 C A BOD1L1 Missense_Mutation p.G2064V 0.15 benign(0.014) TCGA-78-7155-01 4 138450988 138450988 C A PCDH18 Missense_Mutation p.R752L 0.29 deleterious(0) possibly_damaging(0.862) TCGA-78-7155-01 4 141600249 141600249 G A TBC1D9 Missense_Mutation p.S233F 0.34 deleterious(0) benign(0.386) TCGA-78-7155-01 4 147560530 147560530 G T POU4F2 Missense_Mutation p.G80C 0.38 deleterious_low_confidence(0.04) unknown(0) TCGA-78-7155-01 4 147561536 147561536 G T POU4F2 Missense_Mutation p.R269L 0.30 deleterious(0) probably_damaging(0.982) TCGA-78-7155-01 4 151604712 151604712 G A LRBA Missense_Mutation p.S1971F 0.11 deleterious(0.01) probably_damaging(0.912) TCGA-78-7155-01 4 153803926 153803926 G C ARFIP1 Missense_Mutation p.E229Q 0.28 deleterious(0) possibly_damaging(0.815) TCGA-78-7155-01 4 154709967 154709967 C G SFRP2 Silent p.S7S 0.71 TCGA-78-7155-01 4 155507680 155507680 C A FGA Nonsense_Mutation p.G301* 0.39 TCGA-78-7155-01 4 162577480 162577480 A G FSTL5 Silent p.N298N 0.27 TCGA-78-7155-01 4 162577485 162577485 T G FSTL5 Missense_Mutation p.I297L 0.36 deleterious(0.05) benign(0.423) TCGA-78-7155-01 4 17584016 17584016 G A LAP3 Missense_Mutation p.A127T 0.25 deleterious(0.04) benign(0.184) TCGA-78-7155-01 4 185339812 185339812 T A IRF2 Missense_Mutation p.N80Y 0.75 deleterious(0) probably_damaging(0.98) TCGA-78-7155-01 4 185687118 185687118 C A ACSL1 Missense_Mutation p.R429L 0.59 deleterious(0) possibly_damaging(0.699) TCGA-78-7155-01 4 186429513 186429513 T C PDLIM3 Missense_Mutation p.N201S 0.67 tolerated(0.08) benign(0.417) TCGA-78-7155-01 4 22737615 22737615 G A GBA3 Missense_Mutation p.A24T 0.33 tolerated(0.08) benign(0.082) TCGA-78-7155-01 4 22749119 22749119 A C GBA3 Missense_Mutation p.I163L 0.60 tolerated(0.25) benign(0.025) TCGA-78-7155-01 4 23815781 23815781 T - PPARGC1A Frame_Shift_Del p.K442Sfs*21 0.20 TCGA-78-7155-01 4 26668003 26668003 G T TBC1D19 Missense_Mutation p.D214Y 0.17 deleterious(0) probably_damaging(0.994) TCGA-78-7155-01 4 2831327 2831327 G T SH3BP2 Missense_Mutation p.G289C 0.16 deleterious_low_confidence(0.01) probably_damaging(0.924) TCGA-78-7155-01 4 3129315 3129315 C T HTT Missense_Mutation p.S576L 0.10 probably_damaging(0.998) TCGA-78-7155-01 4 3372022 3372022 G A RGS12 Intron 0.28 TCGA-78-7155-01 4 3478232 3478232 C T DOK7 Silent p.S165S 0.31 TCGA-78-7155-01 4 367427 367427 G T ZNF141 Missense_Mutation p.G401C 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-78-7155-01 4 37857304 37857304 A T PGM2 Missense_Mutation p.S560C 0.19 deleterious(0) probably_damaging(1) TCGA-78-7155-01 4 38798645 38798645 T A TLR1 Missense_Mutation p.Y603F 0.57 tolerated(0.11) possibly_damaging(0.66) TCGA-78-7155-01 4 39343997 39343997 C G RFC1 Missense_Mutation p.R100P 0.33 deleterious_low_confidence(0) possibly_damaging(0.551) TCGA-78-7155-01 4 40245027 40245027 C A RHOH Nonsense_Mutation p.C7* 0.50 TCGA-78-7155-01 4 44177021 44177021 G - KCTD8 Frame_Shift_Del p.P403Hfs*32 0.22 TCGA-78-7155-01 4 44450425 44450425 G T KCTD8 Missense_Mutation p.P39H 0.70 deleterious(0.02) benign(0.339) TCGA-78-7155-01 4 44720409 44720409 C A GNPDA2 Missense_Mutation p.C48F 0.24 deleterious_low_confidence(0.05) possibly_damaging(0.602) TCGA-78-7155-01 4 46252441 46252441 C A GABRA2 Missense_Mutation p.V414F 0.24 deleterious(0.01) probably_damaging(0.99) TCGA-78-7155-01 4 46334653 46334653 G T GABRA2 Silent p.G78G 0.17 TCGA-78-7155-01 4 46930439 46930439 C A GABRA4 Missense_Mutation p.V490F 0.29 tolerated_low_confidence(0.28) benign(0.278) TCGA-78-7155-01 4 46930643 46930643 T C GABRA4 Missense_Mutation p.K422E 0.25 tolerated(1) benign(0.001) TCGA-78-7155-01 4 47517556 47517556 C A ATP10D Missense_Mutation p.F118L 0.23 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 4 47537548 47537548 G T ATP10D Missense_Mutation p.V267L 0.21 deleterious(0.05) possibly_damaging(0.762) TCGA-78-7155-01 4 47765523 47765523 T C CORIN Missense_Mutation p.R164G 0.24 tolerated(0.28) benign(0.102) TCGA-78-7155-01 4 48524980 48524980 C T FRYL Missense_Mutation p.D2487N 0.55 tolerated(0.25) probably_damaging(0.996) TCGA-78-7155-01 4 52777283 52777283 G T DCUN1D4 Missense_Mutation p.L221F 0.31 deleterious(0) probably_damaging(0.984) TCGA-78-7155-01 4 54231379 54231379 G A SCFD2 Nonsense_Mutation p.Q244* 0.45 TCGA-78-7155-01 4 59446 59446 C A ZNF595 Missense_Mutation p.L43M 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-78-7155-01 4 62812687 62812687 G C LPHN3 Silent p.T757T 0.33 TCGA-78-7155-01 4 62903488 62903488 T A LPHN3 Missense_Mutation p.C1143S 0.55 deleterious(0) probably_damaging(0.994) TCGA-78-7155-01 4 62935844 62935844 G C LPHN3 Missense_Mutation p.A1210P 0.41 tolerated(0.09) probably_damaging(0.992) TCGA-78-7155-01 4 6303877 6303877 C T WFS1 Silent p.S785S 0.29 TCGA-78-7155-01 4 647946 647946 G C PDE6B Intron 0.56 TCGA-78-7155-01 4 66467728 66467728 C A EPHA5 Nonsense_Mutation p.E181* 0.26 TCGA-78-7155-01 4 66467899 66467899 A - EPHA5 Frame_Shift_Del p.S124Pfs*5 0.30 TCGA-78-7155-01 4 68436841 68436841 C A STAP1 Missense_Mutation p.L54I 0.39 tolerated(0.12) benign(0.01) TCGA-78-7155-01 4 68610368 68610368 G T GNRHR Missense_Mutation p.F220L 0.40 deleterious(0.02) probably_damaging(0.983) TCGA-78-7155-01 4 69100207 69100207 G T TMPRSS11B Missense_Mutation p.A148E 0.26 tolerated(0.1) benign(0.36) TCGA-78-7155-01 4 69101916 69101916 C T TMPRSS11B Missense_Mutation p.A65T 0.29 tolerated(0.51) benign(0.008) TCGA-78-7155-01 4 70155468 70155468 T G UGT2B28 Missense_Mutation p.L363R 0.34 deleterious(0) probably_damaging(1) TCGA-78-7155-01 4 70156323 70156323 C G UGT2B28 Silent p.T368T 0.35 TCGA-78-7155-01 4 70896452 70896452 C A HTN3 5'UTR 0.31 TCGA-78-7155-01 4 71347452 71347452 C A MUC7 Missense_Mutation p.H331N 0.40 tolerated_low_confidence(0.52) unknown(0) TCGA-78-7155-01 4 71508260 71508260 C A ENAM Missense_Mutation p.R373S 0.33 tolerated(0.08) possibly_damaging(0.492) TCGA-78-7155-01 4 71555428 71555428 A T UTP3 Missense_Mutation p.K345M 0.43 deleterious(0.02) possibly_damaging(0.687) TCGA-78-7155-01 4 76532444 76532444 C A CDKL2 Silent p.G155G 0.36 TCGA-78-7155-01 4 76943003 76943003 A T CXCL10 3'UTR 0.29 TCGA-78-7155-01 4 79188481 79188481 G T FRAS1 Silent p.R292R 0.43 TCGA-78-7155-01 4 8229720 8229720 C T SH3TC1 Missense_Mutation p.H767Y 0.65 tolerated(1) benign(0.013) TCGA-78-7155-01 4 85660262 85660262 C A WDFY3 Nonsense_Mutation p.G2159* 0.48 TCGA-78-7155-01 4 87746721 87746721 T A SLC10A6 Silent p.T257T 0.41 TCGA-78-7155-01 4 89020572 89020572 C T ABCG2 Missense_Mutation p.V466M 0.48 deleterious(0.01) possibly_damaging(0.833) TCGA-78-7155-01 4 89649693 89649693 C G FAM13A Missense_Mutation p.K1021N 0.32 deleterious(0.02) probably_damaging(0.96) TCGA-78-7155-01 4 905555 905555 C A GAK Silent p.P96P 0.63 TCGA-78-7155-01 4 91230220 91230220 C A CCSER1 Missense_Mutation p.A262D 0.39 deleterious(0.03) possibly_damaging(0.699) TCGA-78-7155-01 4 94750813 94750813 G T ATOH1 Missense_Mutation p.G246W 0.45 deleterious(0) possibly_damaging(0.51) TCGA-78-7155-01 4 96761908 96761908 G T PDHA2 Missense_Mutation p.A203S 0.42 deleterious(0.02) benign(0.021) TCGA-78-7155-01 4 96762426 96762426 T G PDHA2 Silent p.V375V 0.44 TCGA-78-7155-01 4 9783861 9783861 C A DRD5 Missense_Mutation p.H70N 0.63 deleterious(0) probably_damaging(0.965) TCGA-78-7155-01 5 10465002 10465002 C A ROPN1L Missense_Mutation p.F212L 0.22 tolerated(0.86) benign(0.009) TCGA-78-7155-01 5 10973694 10973694 G T CTNND2 Missense_Mutation p.S1183R 0.40 deleterious(0.03) benign(0.165) TCGA-78-7155-01 5 11082867 11082867 C A CTNND2 Missense_Mutation p.C910F 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-78-7155-01 5 112175950 112175950 A G APC Silent p.A1553A 0.67 TCGA-78-7155-01 5 112769886 112769886 G A TSSK1B Silent p.D217D 0.95 TCGA-78-7155-01 5 11565065 11565065 C G CTNND2 Missense_Mutation p.S93T 0.29 tolerated(0.42) benign(0.046) TCGA-78-7155-01 5 118513159 118513159 C T DMXL1 Missense_Mutation p.T2289M 0.90 deleterious(0) possibly_damaging(0.908) TCGA-78-7155-01 5 118965448 118965448 T A FAM170A 5'UTR 0.83 TCGA-78-7155-01 5 127449957 127449957 G C SLC12A2 Missense_Mutation p.W310C 0.34 deleterious(0) probably_damaging(1) TCGA-78-7155-01 5 127611786 127611786 T A FBN2 Missense_Mutation p.Y2513F 0.89 tolerated(0.94) benign(0.048) TCGA-78-7155-01 5 127664340 127664340 A T FBN2 Intron 0.45 TCGA-78-7155-01 5 128368848 128368848 T C SLC27A6 Missense_Mutation p.V578A 0.93 tolerated(0.12) benign(0.071) TCGA-78-7155-01 5 129037211 129037211 C A ADAMTS19 Missense_Mutation p.P1023T 0.75 tolerated(0.12) possibly_damaging(0.507) TCGA-78-7155-01 5 1293516 1293516 G A TERT Silent p.I495I 0.43 TCGA-78-7155-01 5 1294381 1294381 A T TERT Missense_Mutation p.V207D 0.38 tolerated(0.65) benign(0) TCGA-78-7155-01 5 129520888 129520888 G T CHSY3 Nonsense_Mutation p.E685* 0.95 TCGA-78-7155-01 5 135601950 135601950 G C TRPC7 Missense_Mutation p.Q435E 0.75 tolerated(1) benign(0.01) TCGA-78-7155-01 5 135651404 135651404 G T TRPC7 Silent p.R282R 0.86 TCGA-78-7155-01 5 135651405 135651405 G T TRPC7 Nonsense_Mutation p.C281* 0.86 TCGA-78-7155-01 5 135692480 135692480 T A TRPC7 Missense_Mutation p.K199M 0.82 deleterious(0.03) possibly_damaging(0.895) TCGA-78-7155-01 5 136314220 136314220 G T SPOCK1 3'UTR 0.75 TCGA-78-7155-01 5 137420278 137420278 G T WNT8A Missense_Mutation p.C65F 0.91 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 5 13769204 13769204 C A DNAH5 Missense_Mutation p.K3254N 0.30 possibly_damaging(0.728) TCGA-78-7155-01 5 138704432 138704432 A T PAIP2 Missense_Mutation p.N110I 0.78 tolerated(0.14) possibly_damaging(0.667) TCGA-78-7155-01 5 13891206 13891206 C A DNAH5 Missense_Mutation p.R819M 0.36 possibly_damaging(0.54) TCGA-78-7155-01 5 140255556 140255556 C A PCDHA12 Missense_Mutation p.L167I 0.78 tolerated_low_confidence(0.07) benign(0.135) TCGA-78-7155-01 5 140262281 140262281 C A PCDHA13 Missense_Mutation p.A143E 0.78 tolerated_low_confidence(0.08) possibly_damaging(0.562) TCGA-78-7155-01 5 140475165 140475165 C G PCDHB2 Missense_Mutation p.A264G 0.80 deleterious_low_confidence(0) possibly_damaging(0.67) TCGA-78-7155-01 5 140475166 140475166 C A PCDHB2 Silent p.A264A 0.82 TCGA-78-7155-01 5 140482211 140482211 G A PCDHB3 Missense_Mutation p.V660M 0.86 deleterious_low_confidence(0.01) probably_damaging(0.915) TCGA-78-7155-01 5 140515629 140515629 C A PCDHB5 Silent p.R205R 0.89 TCGA-78-7155-01 5 140557567 140557567 T C PCDHB8 5'UTR 0.39 TCGA-78-7155-01 5 140558334 140558334 C - PCDHB8 Frame_Shift_Del p.P241Lfs*18 0.19 TCGA-78-7155-01 5 140562593 140562593 T C PCDHB16 Silent p.P153P 0.75 TCGA-78-7155-01 5 140574112 140574112 G T PCDHB10 Missense_Mutation p.V663L 0.81 deleterious_low_confidence(0) possibly_damaging(0.733) TCGA-78-7155-01 5 140774034 140774034 G T PCDHGA8 Missense_Mutation p.V552L 0.81 tolerated_low_confidence(0.06) possibly_damaging(0.625) TCGA-78-7155-01 5 140774159 140774159 G T PCDHGA8 Silent p.A593A 0.34 TCGA-78-7155-01 5 141244741 141244741 G A PCDH1 Silent p.P385P 0.85 TCGA-78-7155-01 5 141334615 141334615 G C PCDH12 Missense_Mutation p.S934R 0.82 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 5 145838514 145838514 A T TCERG1 Missense_Mutation p.Q169L 0.79 tolerated(0.14) benign(0.275) TCGA-78-7155-01 5 146017943 146017943 G T PPP2R2B Missense_Mutation p.L224I 0.53 deleterious(0.01) benign(0.407) TCGA-78-7155-01 5 147718114 147718114 G A SPINK9 Missense_Mutation p.C54Y 0.68 deleterious(0) probably_damaging(0.998) TCGA-78-7155-01 5 148743716 148743716 G A PCYOX1L Missense_Mutation p.G138D 0.83 deleterious(0) probably_damaging(1) TCGA-78-7155-01 5 148930456 148930456 C G CSNK1A1 Silent p.G24G 0.23 TCGA-78-7155-01 5 149435882 149435882 G C CSF1R Missense_Mutation p.A781G 0.38 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 5 150056314 150056314 C A MYOZ3 Silent p.P211P 0.83 TCGA-78-7155-01 5 1501688 1501688 C A LPCAT1 Missense_Mutation p.V56F 0.49 tolerated(0.07) benign(0.273) TCGA-78-7155-01 5 150905469 150905469 G A FAT2 Missense_Mutation p.P3456S 0.51 benign(0.438) TCGA-78-7155-01 5 151266335 151266335 C T GLRA1 Missense_Mutation p.V67M 0.83 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 5 156964947 156964947 G T ADAM19 Missense_Mutation p.P102T 0.58 tolerated(0.05) benign(0.037) TCGA-78-7155-01 5 158596030 158596030 C A RNF145 Silent p.L354L 0.69 TCGA-78-7155-01 5 15928421 15928421 G T FBXL7 Missense_Mutation p.V184L 0.43 tolerated(0.23) benign(0.105) TCGA-78-7155-01 5 15928422 15928422 T A FBXL7 Missense_Mutation p.V184E 0.44 deleterious(0.04) possibly_damaging(0.69) TCGA-78-7155-01 5 159344455 159344455 C A ADRA1B Silent p.L181L 0.81 TCGA-78-7155-01 5 168114084 168114084 C T SLIT3 Missense_Mutation p.E1072K 0.71 deleterious(0.04) probably_damaging(0.998) TCGA-78-7155-01 5 168123328 168123328 G A SLIT3 Silent p.N1017N 0.73 TCGA-78-7155-01 5 168180966 168180966 C A SLIT3 Missense_Mutation p.D578Y 0.57 deleterious(0.04) probably_damaging(0.986) TCGA-78-7155-01 5 169145713 169145713 C T DOCK2 Nonsense_Mutation p.Q729* 0.85 TCGA-78-7155-01 5 169507216 169507216 C A DOCK2 Missense_Mutation p.A1739E 0.77 tolerated_low_confidence(1) benign(0.052) TCGA-78-7155-01 5 172752989 172752989 T A STC2 Missense_Mutation p.N59I 0.82 deleterious(0) possibly_damaging(0.756) TCGA-78-7155-01 5 172755091 172755091 C A STC2 Missense_Mutation p.D36Y 0.78 deleterious(0) probably_damaging(0.959) TCGA-78-7155-01 5 176011191 176011191 G A CDHR2 Missense_Mutation p.D687N 0.73 deleterious(0) probably_damaging(0.998) TCGA-78-7155-01 5 176308945 176308945 C A HK3 Missense_Mutation p.R746M 0.83 deleterious(0.04) probably_damaging(0.973) TCGA-78-7155-01 5 176520231 176520231 C T FGFR4 Silent p.L384L 0.83 TCGA-78-7155-01 5 178553074 178553074 C A ADAMTS2 Missense_Mutation p.R892L 0.77 deleterious(0.01) possibly_damaging(0.697) TCGA-78-7155-01 5 179146685 179146685 G C CANX Missense_Mutation p.A310P 0.69 tolerated(0.21) possibly_damaging(0.727) TCGA-78-7155-01 5 19721528 19721528 A C CDH18 Missense_Mutation p.Y191D 0.18 deleterious(0) probably_damaging(0.997) TCGA-78-7155-01 5 22078822 22078822 C G CDH12 5'UTR 0.38 TCGA-78-7155-01 5 22142600 22142600 G T CDH12 Intron 0.37 TCGA-78-7155-01 5 24487969 24487969 C A CDH10 Missense_Mutation p.D724Y 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-78-7155-01 5 24491847 24491847 C A CDH10 Missense_Mutation p.D572Y 0.33 deleterious(0) probably_damaging(0.998) TCGA-78-7155-01 5 26916033 26916033 C A CDH9 Splice_Site p.X77_splice 0.16 TCGA-78-7155-01 5 31799605 31799605 G T PDZD2 Missense_Mutation p.G84C 0.48 deleterious(0) probably_damaging(1) TCGA-78-7155-01 5 32390460 32390460 C A ZFR Missense_Mutation p.G688V 0.31 tolerated(0.5) unknown(0) TCGA-78-7155-01 5 32417849 32417849 T C ZFR Missense_Mutation p.S157G 0.34 tolerated(0.08) benign(0.24) TCGA-78-7155-01 5 33527374 33527374 G T ADAMTS12 Nonsense_Mutation p.C1568* 0.25 TCGA-78-7155-01 5 33577021 33577021 C A ADAMTS12 Missense_Mutation p.G1037V 0.44 tolerated(0.37) benign(0) TCGA-78-7155-01 5 33588798 33588798 G T ADAMTS12 Missense_Mutation p.T924K 0.13 tolerated(0.93) benign(0.004) TCGA-78-7155-01 5 33624397 33624397 G C ADAMTS12 Missense_Mutation p.C694W 0.23 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 5 33630890 33630890 A T ADAMTS12 Missense_Mutation p.C673S 0.20 deleterious(0) probably_damaging(0.976) TCGA-78-7155-01 5 33963842 33963842 G T SLC45A2 Missense_Mutation p.P281Q 0.17 tolerated(0.09) benign(0.009) TCGA-78-7155-01 5 33963844 33963844 A G SLC45A2 Silent p.N280N 0.17 TCGA-78-7155-01 5 33982417 33982417 G T SLC45A2 Silent p.P162P 0.26 TCGA-78-7155-01 5 34008139 34008139 C A AMACR 5'Flank 0.61 TCGA-78-7155-01 5 35003936 35003936 C T AGXT2 Missense_Mutation p.V457I 0.22 tolerated(0.38) benign(0.003) TCGA-78-7155-01 5 35014196 35014196 G T AGXT2 Missense_Mutation p.S331Y 0.24 deleterious(0) probably_damaging(0.98) TCGA-78-7155-01 5 35039598 35039598 G T AGXT2 Missense_Mutation p.R65S 0.25 tolerated(0.05) benign(0.116) TCGA-78-7155-01 5 35641549 35641549 C A SPEF2 Missense_Mutation p.L60I 0.20 deleterious(0.02) possibly_damaging(0.896) TCGA-78-7155-01 5 35876488 35876488 C T IL7R Missense_Mutation p.T427I 0.27 tolerated(0.22) benign(0.037) TCGA-78-7155-01 5 35921107 35921107 G C CAPSL Missense_Mutation p.A39G 0.30 tolerated(0.07) benign(0.009) TCGA-78-7155-01 5 35968221 35968221 C A UGT3A1 Nonsense_Mutation p.E71* 0.57 TCGA-78-7155-01 5 3601197 3601197 G T IRX1 3'UTR 0.53 TCGA-78-7155-01 5 36035965 36035965 C A UGT3A2 Silent p.T469T 0.41 TCGA-78-7155-01 5 36052023 36052023 C A UGT3A2 Missense_Mutation p.R87I 0.10 deleterious(0) benign(0.433) TCGA-78-7155-01 5 38502756 38502758 TGT - LIFR In_Frame_Del p.Q527del 0.30 TCGA-78-7155-01 5 39202061 39202061 C A FYB Missense_Mutation p.K344N 0.20 tolerated(0.25) possibly_damaging(0.701) TCGA-78-7155-01 5 40728524 40728524 C A TTC33 Missense_Mutation p.V120F 0.17 deleterious(0) probably_damaging(0.962) TCGA-78-7155-01 5 40835345 40835345 C A RPL37 5'UTR 0.26 TCGA-78-7155-01 5 40964925 40964925 C G C7 Missense_Mutation p.A611G 0.34 deleterious(0) probably_damaging(0.995) TCGA-78-7155-01 5 40981659 40981659 C G C7 Missense_Mutation p.A839G 0.09 tolerated(0.39) benign(0.001) TCGA-78-7155-01 5 41005676 41005676 G T MROH2B Missense_Mutation p.S1274Y 0.38 tolerated(0.06) possibly_damaging(0.905) TCGA-78-7155-01 5 41045901 41045901 T A MROH2B Missense_Mutation p.T595S 0.62 tolerated(1) benign(0) TCGA-78-7155-01 5 41154084 41154084 C T C6 Silent p.K706K 0.15 TCGA-78-7155-01 5 41160350 41160350 G T C6 Nonsense_Mutation p.C526* 0.29 TCGA-78-7155-01 5 43245913 43245913 G T NIM1K Silent p.V12V 0.28 TCGA-78-7155-01 5 433020 433020 G T AHRR Missense_Mutation p.R379L 0.38 deleterious(0.02) possibly_damaging(0.682) TCGA-78-7155-01 5 44388620 44388620 G A FGF10 Silent p.S55S 0.64 TCGA-78-7155-01 5 52216286 52216286 C T ITGA1 Silent p.S760S 0.23 TCGA-78-7155-01 5 52781743 52781743 G T FST Intron 0.67 TCGA-78-7155-01 5 53751941 53751941 G T HSPB3 Missense_Mutation p.G108C 0.15 deleterious(0) probably_damaging(1) TCGA-78-7155-01 5 53839209 53839209 C A SNX18 Missense_Mutation p.Q608K 0.12 deleterious(0.05) probably_damaging(0.954) TCGA-78-7155-01 5 63257032 63257032 A C HTR1A Missense_Mutation p.M172R 0.76 deleterious(0) probably_damaging(0.995) TCGA-78-7155-01 5 7626323 7626323 G C ADCY2 Missense_Mutation p.G205A 0.34 deleterious(0.01) probably_damaging(0.994) TCGA-78-7155-01 5 76633113 76633113 G C PDE8B Missense_Mutation p.G257A 1.00 deleterious(0) probably_damaging(0.961) TCGA-78-7155-01 5 76932818 76932818 G T OTP Missense_Mutation p.P92H 0.73 tolerated_low_confidence(0.15) benign(0.201) TCGA-78-7155-01 5 7897015 7897015 G T MTRR Missense_Mutation p.G599V 0.41 deleterious(0) probably_damaging(1) TCGA-78-7155-01 5 79027442 79027442 G T CMYA5 Missense_Mutation p.V952L 0.81 benign(0.054) TCGA-78-7155-01 5 80641822 80641822 G T ACOT12 Missense_Mutation p.R219S 0.78 deleterious(0) probably_damaging(0.99) TCGA-78-7155-01 5 82836030 82836030 C A VCAN Missense_Mutation p.A2403D 0.81 tolerated(0.45) benign(0.008) TCGA-78-7155-01 5 82837494 82837494 C G VCAN Missense_Mutation p.S2891C 0.81 deleterious(0.02) probably_damaging(0.928) TCGA-78-7155-01 5 89989938 89989938 C T GPR98 Silent p.F2455F 0.67 TCGA-78-7155-01 5 9066620 9066620 C A SEMA5A Missense_Mutation p.A738S 0.42 tolerated(0.19) benign(0.016) TCGA-78-7155-01 5 94208896 94208896 T A MCTP1 Missense_Mutation p.T662S 0.50 tolerated(0.06) probably_damaging(0.999) TCGA-78-7155-01 5 94417132 94417132 T A MCTP1 Intron 0.33 TCGA-78-7155-01 6 102069914 102069914 C A GRIK2 Missense_Mutation p.T69K 0.71 tolerated(0.29) probably_damaging(0.996) TCGA-78-7155-01 6 10529945 10529945 G T GCNT2 Silent p.V267V 0.18 TCGA-78-7155-01 6 108984932 108984932 G T FOXO3 Missense_Mutation p.S299I 0.85 deleterious(0) benign(0.131) TCGA-78-7155-01 6 110713928 110713928 T A DDO 3'UTR 0.77 TCGA-78-7155-01 6 110777975 110777975 C A SLC22A16 Missense_Mutation p.R100M 0.78 tolerated(0.07) benign(0.062) TCGA-78-7155-01 6 114378639 114378639 G T HS3ST5 Missense_Mutation p.L275M 0.73 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 6 117128190 117128190 G T GPRC6A Missense_Mutation p.N226K 0.76 tolerated(0.11) benign(0.103) TCGA-78-7155-01 6 117239224 117239224 G T RFX6 Missense_Mutation p.A333S 0.35 tolerated(0.33) benign(0.05) TCGA-78-7155-01 6 118886876 118886876 A G CEP85L Missense_Mutation p.M282T 0.47 tolerated(0.48) benign(0.002) TCGA-78-7155-01 6 130415511 130415511 A T L3MBTL3 Missense_Mutation p.S579C 0.94 tolerated(0.59) possibly_damaging(0.779) TCGA-78-7155-01 6 132859668 132859668 G - TAAR9 Frame_Shift_Del p.V81Wfs*? 0.21 TCGA-78-7155-01 6 136687148 136687148 G A MAP7 Missense_Mutation p.S355F 0.70 tolerated(0.14) possibly_damaging(0.898) TCGA-78-7155-01 6 137519525 137519525 C G IFNGR1 Silent p.L371L 0.29 TCGA-78-7155-01 6 139094885 139094885 T A CCDC28A Missense_Mutation p.L25Q 0.75 deleterious_low_confidence(0.04) benign(0.036) TCGA-78-7155-01 6 139226204 139226204 T C REPS1 Silent p.L795L 0.72 TCGA-78-7155-01 6 148852668 148852668 G T SASH1 Missense_Mutation p.G479C 0.86 deleterious(0.03) benign(0.089) TCGA-78-7155-01 6 150005349 150005350 TG A LATS1 Frame_Shift_Del p.P292Lfs*19 0.40 TCGA-78-7155-01 6 155498024 155498024 T C TIAM2 Silent p.T812T 0.56 TCGA-78-7155-01 6 159187861 159187861 G A EZR 3'UTR 0.82 TCGA-78-7155-01 6 159187869 159187869 G C EZR 3'UTR 0.78 TCGA-78-7155-01 6 160183048 160183048 C A ACAT2 5'UTR 0.92 TCGA-78-7155-01 6 161173271 161173271 C T PLG Silent p.A750A 0.33 TCGA-78-7155-01 6 161970005 161970005 C A PARK2 Nonsense_Mutation p.E322* 0.25 TCGA-78-7155-01 6 167754848 167754848 A C TTLL2 Missense_Mutation p.Q487P 0.36 tolerated(0.07) benign(0.008) TCGA-78-7155-01 6 170033143 170033143 C T WDR27 Missense_Mutation p.R708Q 0.83 tolerated(0.06) probably_damaging(0.976) TCGA-78-7155-01 6 18250037 18250037 C A DEK Missense_Mutation p.G203C 0.37 deleterious(0.01) probably_damaging(0.969) TCGA-78-7155-01 6 19838366 19838366 G T ID4 Silent p.P127P 0.37 TCGA-78-7155-01 6 24134624 24134624 C A NRSN1 Silent p.R23R 0.15 TCGA-78-7155-01 6 24865573 24865573 C G FAM65B Missense_Mutation p.E174Q 0.33 deleterious(0) possibly_damaging(0.839) TCGA-78-7155-01 6 25450173 25450173 G T LRRC16A Missense_Mutation p.S140I 0.51 tolerated(0.15) benign(0.04) TCGA-78-7155-01 6 25862500 25862500 A T SLC17A3 Missense_Mutation p.F88L 0.29 tolerated(0.65) benign(0.006) TCGA-78-7155-01 6 26124400 26124400 G T HIST1H2AC 5'Flank 0.42 TCGA-78-7155-01 6 26199333 26199333 C A HIST1H2AD Missense_Mutation p.G47C 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-78-7155-01 6 26413336 26413336 G T BTN3A1 Intron 0.51 TCGA-78-7155-01 6 28053315 28053315 T A ZNF165 Silent p.L19L 0.69 TCGA-78-7155-01 6 28269009 28269009 G T PGBD1 Missense_Mutation p.V460L 0.20 tolerated(0.13) benign(0.04) TCGA-78-7155-01 6 28541454 28541454 C T SCAND3 Missense_Mutation p.D738N 0.22 tolerated_low_confidence(0.19) benign(0.039) TCGA-78-7155-01 6 29141996 29141996 C A OR2J2 Missense_Mutation p.A195E 0.65 tolerated(0.28) benign(0.02) TCGA-78-7155-01 6 292488 292488 T C DUSP22 5'UTR 0.27 TCGA-78-7155-01 6 31548635 31548635 C A LTB Missense_Mutation p.G196W 0.18 deleterious_low_confidence(0.01) probably_damaging(0.937) TCGA-78-7155-01 6 31749678 31749678 C A VARS Nonsense_Mutation p.E765* 0.64 TCGA-78-7155-01 6 31913981 31913981 C T CFB 5'UTR 0.23 TCGA-78-7155-01 6 32130811 32130811 C A PPT2 3'UTR 0.20 TCGA-78-7155-01 6 32168997 32168997 G T NOTCH4 Silent p.R1346R 0.44 TCGA-78-7155-01 6 32188025 32188025 T A NOTCH4 Missense_Mutation p.Q399L 0.22 deleterious(0.03) benign(0.345) TCGA-78-7155-01 6 32261590 32261590 T A C6orf10 Missense_Mutation p.K287I 0.70 deleterious(0) probably_damaging(0.994) TCGA-78-7155-01 6 32370752 32370752 G A BTNL2 Silent p.P223P 0.10 TCGA-78-7155-01 6 33145200 33145200 G T COL11A2 Missense_Mutation p.P568T 0.30 possibly_damaging(0.803) TCGA-78-7155-01 6 33157167 33157167 A G COL11A2 Silent p.C54C 0.69 TCGA-78-7155-01 6 350826 350826 T G DUSP22 Silent p.A171A 0.23 TCGA-78-7155-01 6 35765033 35765033 G T CLPS Silent p.A11A 0.10 TCGA-78-7155-01 6 36359497 36359497 C G PXT1 3'UTR 0.74 TCGA-78-7155-01 6 36359620 36359620 T C PXT1 Missense_Mutation p.D111G 0.23 tolerated_low_confidence(0.06) benign(0.024) TCGA-78-7155-01 6 38545399 38545399 T A BTBD9 Missense_Mutation p.L377F 0.57 deleterious(0) unknown(0) TCGA-78-7155-01 6 38738285 38738285 G T DNAH8 Nonsense_Mutation p.E355* 0.36 TCGA-78-7155-01 6 38891824 38891824 T A DNAH8 Missense_Mutation p.N3399K 0.19 possibly_damaging(0.58) TCGA-78-7155-01 6 40360088 40360088 C T LRFN2 Missense_Mutation p.R655H 0.28 tolerated(0.53) benign(0.001) TCGA-78-7155-01 6 42225903 42225903 C A TRERF1 Missense_Mutation p.G769V 0.28 tolerated(0.35) probably_damaging(0.953) TCGA-78-7155-01 6 42225904 42225904 C A TRERF1 Missense_Mutation p.G769W 0.29 deleterious(0) probably_damaging(0.965) TCGA-78-7155-01 6 42893424 42893424 C A PTCRA 3'UTR 0.63 TCGA-78-7155-01 6 43400872 43400872 G T ABCC10 Missense_Mutation p.G385V 0.26 deleterious(0.01) probably_damaging(0.959) TCGA-78-7155-01 6 44199133 44199133 G C SLC29A1 Missense_Mutation p.G267R 0.56 tolerated(0.47) benign(0.008) TCGA-78-7155-01 6 44390392 44390392 C G CDC5L Missense_Mutation p.S417C 0.24 deleterious(0.05) possibly_damaging(0.684) TCGA-78-7155-01 6 49696353 49696353 G T CRISP3 3'UTR 0.58 TCGA-78-7155-01 6 50712878 50712878 C A TFAP2D Silent p.A314A 0.55 TCGA-78-7155-01 6 52659012 52659012 G A GSTA1 Silent p.L109L 0.27 TCGA-78-7155-01 6 52697680 52697680 T A GSTA5 Missense_Mutation p.I175F 0.54 deleterious(0.01) possibly_damaging(0.675) TCGA-78-7155-01 6 53784295 53784295 G C LRRC1 Splice_Site p.X369_splice 0.29 TCGA-78-7155-01 6 53989559 53989559 C A MLIP Missense_Mutation p.L170M 0.26 deleterious(0.02) possibly_damaging(0.885) TCGA-78-7155-01 6 56472094 56472094 C A DST Intron 0.41 TCGA-78-7155-01 6 57372335 57372335 G T PRIM2 Missense_Mutation p.Q247H 0.17 tolerated(0.29) benign(0.112) TCGA-78-7155-01 6 63990034 63990034 C A LGSN Missense_Mutation p.Q474H 0.30 deleterious(0.03) benign(0.003) TCGA-78-7155-01 6 6654960 6654960 G A LY86 3'UTR 0.31 TCGA-78-7155-01 6 70639585 70639585 C T COL19A1 Missense_Mutation p.P220L 0.17 deleterious(0) unknown(0) TCGA-78-7155-01 6 70909428 70909428 C G COL19A1 Missense_Mutation p.P1071A 0.72 tolerated(0.12) probably_damaging(0.997) TCGA-78-7155-01 6 71235546 71235546 C G FAM135A Missense_Mutation p.P920R 0.28 tolerated_low_confidence(0.14) benign(0.128) TCGA-78-7155-01 6 71567637 71567637 G T SMAP1 Missense_Mutation p.G325V 0.60 deleterious(0) probably_damaging(0.973) TCGA-78-7155-01 6 7230981 7230981 G T RREB1 Silent p.S883S 0.17 TCGA-78-7155-01 6 72806748 72806748 G T RIMS1 Silent p.P114P 0.69 TCGA-78-7155-01 6 7583592 7583592 G A DSP Missense_Mutation p.E2033K 0.65 possibly_damaging(0.872) TCGA-78-7155-01 6 75861589 75861589 C G COL12A1 Missense_Mutation p.A1332P 0.60 probably_damaging(1) TCGA-78-7155-01 6 85446925 85446925 C A TBX18 Missense_Mutation p.L434F 0.83 tolerated(0.09) probably_damaging(0.991) TCGA-78-7155-01 6 87993968 87993968 G T GJB7 Silent p.L221L 0.83 TCGA-78-7155-01 6 90460092 90460092 C T MDN1 Silent p.G1129G 0.85 TCGA-78-7155-01 6 93956558 93956558 A G EPHA7 Missense_Mutation p.M893T 0.76 deleterious(0.02) benign(0.19) TCGA-78-7155-01 7 100552241 100552241 T G MUC3A Missense_Mutation p.V331G 0.42 deleterious(0) probably_damaging(0.929) TCGA-78-7155-01 7 100686953 100686953 C A MUC17 Missense_Mutation p.P4086T 0.85 unknown(0) TCGA-78-7155-01 7 102824467 102824467 C A DPY19L2P2 RNA 0.72 TCGA-78-7155-01 7 106508261 106508261 G C PIK3CG Silent p.A85A 0.75 TCGA-78-7155-01 7 107002814 107002814 C A COG5 Missense_Mutation p.R327L 0.91 deleterious(0) probably_damaging(0.985) TCGA-78-7155-01 7 113520163 113520163 T A PPP1R3A Silent p.I328I 0.37 TCGA-78-7155-01 7 114269983 114269983 C G FOXP2 Missense_Mutation p.Q199E 0.77 tolerated(1) unknown(0) TCGA-78-7155-01 7 114284926 114284926 T A FOXP2 Intron 0.88 TCGA-78-7155-01 7 114330011 114330011 G A FOXP2 3'UTR 0.91 TCGA-78-7155-01 7 117876982 117876982 T A ANKRD7 Splice_Site p.X238_splice 0.85 TCGA-78-7155-01 7 120935540 120935540 A T CPED1 Missense_Mutation p.K972I 0.94 deleterious(0) probably_damaging(0.944) TCGA-78-7155-01 7 123109440 123109440 T - IQUB Splice_Site p.X471_splice 0.36 TCGA-78-7155-01 7 126409993 126409993 A G GRM8 Missense_Mutation p.I428T 0.51 tolerated(1) benign(0.003) TCGA-78-7155-01 7 127014753 127014753 C A ZNF800 Nonsense_Mutation p.E213* 0.49 TCGA-78-7155-01 7 127638004 127638004 G T SND1 Intron 0.61 TCGA-78-7155-01 7 127729610 127729610 G T SND1 Missense_Mutation p.V830L 0.18 tolerated(0.08) benign(0.031) TCGA-78-7155-01 7 128478681 128478681 T C FLNC Missense_Mutation p.V412A 0.32 tolerated(0.18) probably_damaging(0.998) TCGA-78-7155-01 7 128486948 128486948 G C FLNC Missense_Mutation p.R1426P 0.53 tolerated(0.06) possibly_damaging(0.508) TCGA-78-7155-01 7 128498253 128498253 G T FLNC Missense_Mutation p.V2658L 0.55 deleterious(0.02) probably_damaging(0.999) TCGA-78-7155-01 7 128843410 128843410 C A SMO Missense_Mutation p.R173S 0.50 tolerated(0.38) benign(0.078) TCGA-78-7155-01 7 129062682 129062682 C A AHCYL2 Missense_Mutation p.A488E 0.24 tolerated(0.1) benign(0.057) TCGA-78-7155-01 7 130357665 130357665 G T TSGA13 Missense_Mutation p.P147T 0.82 tolerated(0.08) possibly_damaging(0.803) TCGA-78-7155-01 7 131829931 131829931 A T PLXNA4 Silent p.A1724A 0.55 TCGA-78-7155-01 7 135376069 135376069 C T SLC13A4 Silent p.E441E 0.36 TCGA-78-7155-01 7 136700959 136700959 G A CHRM2 Silent p.K449K 0.83 TCGA-78-7155-01 7 136912664 136912664 G T PTN 3'UTR 0.88 TCGA-78-7155-01 7 140246698 140246698 G T DENND2A Silent p.A693A 0.77 TCGA-78-7155-01 7 141730439 141730439 A T MGAM Splice_Site p.X452_splice 0.81 TCGA-78-7155-01 7 141736737 141736737 C T MGAM Missense_Mutation p.H731Y 0.83 deleterious(0.02) probably_damaging(0.996) TCGA-78-7155-01 7 142013012 142013012 C A TRBV4-1 5'UTR 0.85 TCGA-78-7155-01 7 142625798 142625798 C A TRPV5 Missense_Mutation p.E250D 0.89 deleterious(0.02) probably_damaging(0.931) TCGA-78-7155-01 7 142636792 142636792 C T C7orf34 Missense_Mutation p.P50L 0.77 tolerated_low_confidence(0.05) probably_damaging(0.958) TCGA-78-7155-01 7 142723979 142723979 G T OR9A2 Missense_Mutation p.L81I 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-78-7155-01 7 143175593 143175593 C T TAS2R41 Missense_Mutation p.H210Y 0.81 deleterious(0.02) probably_damaging(1) TCGA-78-7155-01 7 143701656 143701656 C A OR6B1 Nonsense_Mutation p.C189* 0.26 TCGA-78-7155-01 7 144096865 144096865 G T NOBOX Missense_Mutation p.A380D 0.87 tolerated(0.18) benign(0.059) TCGA-78-7155-01 7 146829583 146829583 C A CNTNAP2 Missense_Mutation p.Q444K 0.79 tolerated(0.84) benign(0.049) TCGA-78-7155-01 7 147092857 147092857 G A CNTNAP2 Missense_Mutation p.C552Y 0.88 deleterious(0) probably_damaging(0.991) TCGA-78-7155-01 7 148544290 148544290 C A EZH2 Missense_Mutation p.R34L 0.48 deleterious(0.01) possibly_damaging(0.897) TCGA-78-7155-01 7 14880840 14880840 G - DGKB Frame_Shift_Del p.Q17Nfs*13 0.36 TCGA-78-7155-01 7 148895563 148895563 G A ZNF282 Missense_Mutation p.V102M 0.88 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 7 149480302 149480302 G A SSPO RNA 0.55 TCGA-78-7155-01 7 150217137 150217137 G T GIMAP7 Silent p.A25A 0.83 TCGA-78-7155-01 7 150266999 150266999 C T GIMAP4 Nonsense_Mutation p.Q4* 0.82 TCGA-78-7155-01 7 150704224 150704224 C A NOS3 Missense_Mutation p.P658T 0.83 deleterious(0.01) probably_damaging(0.998) TCGA-78-7155-01 7 1523719 1523719 G A INTS1 Silent p.L1117L 0.88 TCGA-78-7155-01 7 154143368 154143368 G T DPP6 Missense_Mutation p.V105F 0.81 tolerated(0.07) benign(0.275) TCGA-78-7155-01 7 154379599 154379599 G C DPP6 Intron 0.79 TCGA-78-7155-01 7 15725606 15725606 C T MEOX2 Missense_Mutation p.G141E 0.69 tolerated(0.12) probably_damaging(0.998) TCGA-78-7155-01 7 18067474 18067474 C G PRPS1L1 5'UTR 0.56 TCGA-78-7155-01 7 19015535 19015535 A T HDAC9 Silent p.L1043L 0.59 TCGA-78-7155-01 7 20706424 20706424 A G ABCB5 Intron 0.71 TCGA-78-7155-01 7 20782625 20782625 G A ABCB5 Silent p.G1050G 0.25 TCGA-78-7155-01 7 21784174 21784174 T A DNAH11 Nonsense_Mutation p.L2765* 0.28 TCGA-78-7155-01 7 21827194 21827194 T A DNAH11 Missense_Mutation p.F3313Y 0.58 benign(0.065) TCGA-78-7155-01 7 21901563 21901563 C G DNAH11 Silent p.T3772T 0.25 TCGA-78-7155-01 7 27209104 27209104 G A RP1-170O19.20 Intron 0.16 TCGA-78-7155-01 7 28857757 28857757 C A CREB5 Missense_Mutation p.P442T 0.62 deleterious(0) unknown(0) TCGA-78-7155-01 7 29539621 29539621 T A CHN2 Missense_Mutation p.V293E 0.21 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 7 31117644 31117644 C - ADCYAP1R1 Frame_Shift_Del p.A67Pfs*40 0.15 TCGA-78-7155-01 7 31123758 31123758 A G ADCYAP1R1 Missense_Mutation p.M111V 0.71 tolerated(0.31) benign(0.001) TCGA-78-7155-01 7 31692358 31692360 CTT - CCDC129 Intron 0.20 TCGA-78-7155-01 7 34091553 34091553 T A BMPER Missense_Mutation p.Y253N 0.64 tolerated(0.09) benign(0.032) TCGA-78-7155-01 7 36438687 36438687 G T ANLN Splice_Site p.X58_splice 0.26 TCGA-78-7155-01 7 37928015 37928015 A G NME8 Missense_Mutation p.T462A 0.30 tolerated(0.66) benign(0.088) TCGA-78-7155-01 7 3991467 3991467 G T SDK1 Silent p.A355A 0.83 TCGA-78-7155-01 7 41729208 41729208 T C INHBA 3'UTR 0.18 TCGA-78-7155-01 7 41730103 41730103 C A INHBA Missense_Mutation p.K142N 0.35 tolerated(0.59) possibly_damaging(0.907) TCGA-78-7155-01 7 4249774 4249774 A T SDK1 Missense_Mutation p.E1840V 0.90 deleterious(0) probably_damaging(0.98) TCGA-78-7155-01 7 43484767 43484767 G A HECW1 Missense_Mutation p.G666R 0.58 deleterious_low_confidence(0.03) possibly_damaging(0.716) TCGA-78-7155-01 7 43918044 43918044 C T URGCP Missense_Mutation p.D340N 0.21 tolerated(0.13) probably_damaging(0.957) TCGA-78-7155-01 7 44105093 44105093 G C PGAM2 Silent p.G12G 0.22 TCGA-78-7155-01 7 44198781 44198781 C T GCK 5'UTR 0.28 TCGA-78-7155-01 7 44198782 44198782 T A GCK 5'UTR 0.27 TCGA-78-7155-01 7 47407966 47407966 C - TNS3 Frame_Shift_Del p.Q760Kfs*16 0.15 TCGA-78-7155-01 7 47874766 47874766 C A PKD1L1 Missense_Mutation p.A2007S 0.30 deleterious(0.04) benign(0.327) TCGA-78-7155-01 7 48443368 48443368 A T ABCA13 Missense_Mutation p.I3988F 0.27 probably_damaging(0.971) TCGA-78-7155-01 7 48443404 48443404 G C ABCA13 Missense_Mutation p.D4000H 0.57 probably_damaging(1) TCGA-78-7155-01 7 51094361 51094361 G A COBL Missense_Mutation p.T1129M 0.06 deleterious(0.02) benign(0.102) TCGA-78-7155-01 7 55225444 55225444 A T EGFR Missense_Mutation p.Q432H 0.33 tolerated(0.42) probably_damaging(0.971) TCGA-78-7155-01 7 55242491 55242491 A T EGFR Missense_Mutation p.K754I 0.43 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 7 55266410 55266410 G T EGFR Missense_Mutation p.G901V 0.10 deleterious(0) probably_damaging(1) TCGA-78-7155-01 7 55750498 55750498 G T RNU6-389P 5'Flank 0.36 TCGA-78-7155-01 7 55902167 55902167 T C SEPT14 Missense_Mutation p.Q224R 0.47 deleterious(0.05) benign(0.094) TCGA-78-7155-01 7 55902168 55902168 G T SEPT14 Missense_Mutation p.Q224K 0.47 deleterious(0.05) possibly_damaging(0.452) TCGA-78-7155-01 7 57509946 57509946 T A ZNF716 5'UTR 0.37 TCGA-78-7155-01 7 70880959 70880959 G T WBSCR17 Missense_Mutation p.G225V 0.58 deleterious(0) probably_damaging(1) TCGA-78-7155-01 7 8475274 8475274 G T NXPH1 5'UTR 0.87 TCGA-78-7155-01 7 88963186 88963186 C A ZNF804B Missense_Mutation p.S297Y 0.71 deleterious(0.01) possibly_damaging(0.73) TCGA-78-7155-01 7 88963308 88963308 C A ZNF804B Missense_Mutation p.P338T 0.81 tolerated(0.31) possibly_damaging(0.743) TCGA-78-7155-01 7 92730661 92730661 A T SAMD9 Missense_Mutation p.Y1584N 0.81 deleterious(0) probably_damaging(0.992) TCGA-78-7155-01 7 92734566 92734566 T A SAMD9 Missense_Mutation p.K282M 0.89 tolerated(0.16) possibly_damaging(0.524) TCGA-78-7155-01 7 92905512 92905512 A T CCDC132 Missense_Mutation p.Q279H 0.79 deleterious(0.01) probably_damaging(0.958) TCGA-78-7155-01 7 95906644 95906644 T C SLC25A13 Missense_Mutation p.S26G 1.00 deleterious(0) possibly_damaging(0.881) TCGA-78-7155-01 7 97361940 97361940 G T TAC1 Missense_Mutation p.A6S 0.88 tolerated(0.05) possibly_damaging(0.528) TCGA-78-7155-01 7 97991678 97991678 C T BAIAP2L1 Missense_Mutation p.A40T 0.85 deleterious(0) probably_damaging(1) TCGA-78-7155-01 7 98562303 98562303 A T TRRAP Missense_Mutation p.D2287V 0.86 benign(0.209) TCGA-78-7155-01 8 102701577 102701577 C G NCALD Missense_Mutation p.R181P 0.16 tolerated(0.07) possibly_damaging(0.63) TCGA-78-7155-01 8 104063301 104063301 A G ATP6V1C1 Missense_Mutation p.R104G 0.54 deleterious(0.04) benign(0.308) TCGA-78-7155-01 8 104415469 104415469 G C SLC25A32 Missense_Mutation p.P159A 0.17 tolerated(0.13) benign(0.001) TCGA-78-7155-01 8 105263929 105263929 G T RIMS2 Nonsense_Mutation p.G1311* 0.64 TCGA-78-7155-01 8 105361749 105361749 A G DCSTAMP Silent p.S323S 0.16 TCGA-78-7155-01 8 10623340 10623340 C A PINX1 Missense_Mutation p.M186I 0.68 deleterious(0) possibly_damaging(0.839) TCGA-78-7155-01 8 110397854 110397854 T A PKHD1L1 Silent p.I188I 0.40 TCGA-78-7155-01 8 110464484 110464484 T A PKHD1L1 Missense_Mutation p.I2161N 0.32 deleterious(0) probably_damaging(0.939) TCGA-78-7155-01 8 110509245 110509245 T G PKHD1L1 Silent p.L3475L 0.59 TCGA-78-7155-01 8 11189033 11189033 G T SLC35G5 Missense_Mutation p.V140L 0.63 tolerated(0.08) possibly_damaging(0.45) TCGA-78-7155-01 8 114389104 114389104 G A CSMD3 Intron 0.35 TCGA-78-7155-01 8 118175669 118175669 G T SLC30A8 Missense_Mutation p.E243D 0.22 tolerated(0.36) benign(0.005) TCGA-78-7155-01 8 120810006 120810006 A G TAF2 Silent p.Y291Y 0.27 TCGA-78-7155-01 8 121267580 121267580 A G COL14A1 Missense_Mutation p.I952V 0.36 tolerated(0.36) benign(0.003) TCGA-78-7155-01 8 122626277 122626277 T G HAS2 3'UTR 0.25 TCGA-78-7155-01 8 124657999 124657999 G C KLHL38 Missense_Mutation p.R576G 0.45 deleterious_low_confidence(0.05) benign(0.006) TCGA-78-7155-01 8 124747998 124747998 C A ANXA13 Missense_Mutation p.Q45H 0.44 tolerated(0.12) benign(0.009) TCGA-78-7155-01 8 125074115 125074115 T A FER1L6 Missense_Mutation p.L1057Q 0.32 deleterious(0) probably_damaging(1) TCGA-78-7155-01 8 128428463 128428463 C A POU5F1B Missense_Mutation p.P118T 0.41 tolerated(0.65) benign(0.007) TCGA-78-7155-01 8 131070229 131070229 C A ASAP1 Missense_Mutation p.V1096F 0.49 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 8 132052171 132052171 T A ADCY8 Missense_Mutation p.S137C 0.75 deleterious(0) probably_damaging(0.971) TCGA-78-7155-01 8 13357256 13357256 G A DLC1 Missense_Mutation p.H109Y 0.66 deleterious_low_confidence(0) possibly_damaging(0.791) TCGA-78-7155-01 8 133975270 133975270 G T TG Missense_Mutation p.M1833I 0.35 tolerated(0.43) benign(0.001) TCGA-78-7155-01 8 134108570 134108570 G T TG Missense_Mutation p.G2509W 0.43 deleterious(0) probably_damaging(1) TCGA-78-7155-01 8 134472091 134472091 C T ST3GAL1 Silent p.T313T 0.38 TCGA-78-7155-01 8 135614607 135614607 C A ZFAT Missense_Mutation p.R452M 0.38 deleterious(0) probably_damaging(0.998) TCGA-78-7155-01 8 139165094 139165094 C A FAM135B Missense_Mutation p.G542C 0.47 tolerated(0.17) benign(0.033) TCGA-78-7155-01 8 13948043 13948043 A G SGCZ Missense_Mutation p.L283P 0.71 deleterious(0) probably_damaging(0.94) TCGA-78-7155-01 8 141381254 141381254 C T TRAPPC9 Missense_Mutation p.R485H 0.42 deleterious(0) probably_damaging(0.937) TCGA-78-7155-01 8 141554341 141554341 C T AGO2 Missense_Mutation p.G604R 0.06 deleterious(0.02) possibly_damaging(0.759) TCGA-78-7155-01 8 143558878 143558878 A T BAI1 Missense_Mutation p.Q452L 0.46 deleterious(0) benign(0.227) TCGA-78-7155-01 8 144403382 144403382 C T TOP1MT Missense_Mutation p.V379M 0.70 deleterious(0) probably_damaging(0.993) TCGA-78-7155-01 8 144620697 144620697 C A ZC3H3 Silent p.G280G 0.42 TCGA-78-7155-01 8 144620698 144620698 C A ZC3H3 Missense_Mutation p.G280V 0.43 tolerated(0.67) benign(0) TCGA-78-7155-01 8 144945106 144945106 C - EPPK1 Frame_Shift_Del p.H773Tfs*49 0.31 TCGA-78-7155-01 8 145947348 145947358 AAGGATTTCTC - ZNF251 Frame_Shift_Del p.E563Wfs*3 0.36 TCGA-78-7155-01 8 15615336 15615336 C A TUSC3 3'UTR 0.71 TCGA-78-7155-01 8 17815210 17815210 G C PCM1 Missense_Mutation p.E656Q 0.82 tolerated(0.24) benign(0.426) TCGA-78-7155-01 8 21986575 21986575 G T HR Missense_Mutation p.H37N 0.70 tolerated_low_confidence(0.05) benign(0.003) TCGA-78-7155-01 8 24199146 24199146 G T ADAM28 Missense_Mutation p.G569V 0.63 deleterious(0) probably_damaging(1) TCGA-78-7155-01 8 24251623 24251623 C T ADAMDEC1 Missense_Mutation p.P109L 0.62 deleterious(0.01) probably_damaging(0.917) TCGA-78-7155-01 8 27099232 27099232 C A STMN4 Missense_Mutation p.R51L 0.49 tolerated(0.22) unknown(0) TCGA-78-7155-01 8 27145298 27145298 C A TRIM35 Silent p.T417T 0.58 TCGA-78-7155-01 8 27737272 27737272 C A SCARA5 Missense_Mutation p.A389S 0.65 tolerated(0.43) benign(0.001) TCGA-78-7155-01 8 2808674 2808674 G T CSMD1 Missense_Mutation p.T3388N 0.67 possibly_damaging(0.862) TCGA-78-7155-01 8 31030607 31030607 C G WRN Missense_Mutation p.L1430V 0.80 deleterious_low_confidence(0) possibly_damaging(0.632) TCGA-78-7155-01 8 36664969 36664969 G T KCNU1 Splice_Site p.X219_splice 0.54 TCGA-78-7155-01 8 37609233 37609233 G A ERLIN2 Missense_Mutation p.D247N 0.43 tolerated(0.3) probably_damaging(0.984) TCGA-78-7155-01 8 38175482 38175482 C A WHSC1L1 Intron 0.25 TCGA-78-7155-01 8 38699955 38699955 G T TACC1 Missense_Mutation p.G704V 0.50 deleterious(0) probably_damaging(0.988) TCGA-78-7155-01 8 38848959 38848959 C A TM2D2 Missense_Mutation p.K179N 0.29 deleterious(0) probably_damaging(1) TCGA-78-7155-01 8 39486892 39486892 G T ADAM18 Splice_Site p.X175_splice 0.45 TCGA-78-7155-01 8 39776358 39776358 C A IDO1 Missense_Mutation p.P110T 0.27 deleterious(0) probably_damaging(1) TCGA-78-7155-01 8 41166586 41166586 G A SFRP1 Silent p.A31A 0.64 TCGA-78-7155-01 8 41469465 41469465 C G AGPAT6 Missense_Mutation p.R219G 0.17 tolerated(0.05) benign(0.012) TCGA-78-7155-01 8 42323300 42323300 T C SLC20A2 Missense_Mutation p.K142R 0.65 tolerated(0.51) benign(0.069) TCGA-78-7155-01 8 42977541 42977541 C G POMK Missense_Mutation p.L192V 0.25 deleterious(0.03) probably_damaging(0.998) TCGA-78-7155-01 8 43197396 43197396 G A POTEA RNA 0.26 TCGA-78-7155-01 8 48889288 48889288 G T MCM4 Missense_Mutation p.A848S 0.14 tolerated(0.15) benign(0.067) TCGA-78-7155-01 8 49832655 49832655 C A SNAI2 Missense_Mutation p.G142V 0.32 deleterious(0) probably_damaging(0.964) TCGA-78-7155-01 8 49832656 49832656 C A SNAI2 Missense_Mutation p.G142W 0.31 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 8 54147573 54147573 T A OPRK1 Missense_Mutation p.Y119F 0.54 tolerated(0.08) benign(0.198) TCGA-78-7155-01 8 55539845 55539845 G T RP1 Missense_Mutation p.V1135L 0.31 tolerated(0.1) benign(0.326) TCGA-78-7155-01 8 55541689 55541689 A T RP1 Missense_Mutation p.K1749N 0.31 deleterious(0) possibly_damaging(0.848) TCGA-78-7155-01 8 56675305 56675305 G C TMEM68 Missense_Mutation p.H72D 0.54 tolerated(0.08) probably_damaging(0.966) TCGA-78-7155-01 8 65517310 65517310 G A CYP7B1 Nonsense_Mutation p.R388* 0.53 TCGA-78-7155-01 8 6614774 6614774 G T AGPAT5 Missense_Mutation p.K320N 0.78 deleterious(0.01) benign(0.434) TCGA-78-7155-01 8 69021769 69021769 C G PREX2 Missense_Mutation p.D1019E 0.20 deleterious(0) benign(0.318) TCGA-78-7155-01 8 70536307 70536307 G T SULF1 Missense_Mutation p.K575N 0.20 tolerated(0.11) benign(0.056) TCGA-78-7155-01 8 70551059 70551059 G A SULF1 Silent p.K839K 0.22 TCGA-78-7155-01 8 70591610 70591610 C A SLCO5A1 Intron 0.17 TCGA-78-7155-01 8 77768195 77768195 G T ZFHX4 Missense_Mutation p.G3013V 0.56 benign(0.159) TCGA-78-7155-01 8 86027440 86027440 T C LRRCC1 Missense_Mutation p.L217P 0.36 deleterious(0) possibly_damaging(0.806) TCGA-78-7155-01 8 86027441 86027441 G T LRRCC1 Silent p.L217L 0.36 TCGA-78-7155-01 8 87076713 87076713 G T PSKH2 Silent p.V111V 0.48 TCGA-78-7155-01 8 87680390 87680390 G T CNGB3 Missense_Mutation p.P167H 0.35 deleterious(0.01) possibly_damaging(0.76) TCGA-78-7155-01 8 87738759 87738759 C A CNGB3 Missense_Mutation p.S113I 0.40 deleterious(0.01) benign(0.374) TCGA-78-7155-01 8 88886059 88886059 G T DCAF4L2 Silent p.R47R 0.22 TCGA-78-7155-01 8 90965709 90965709 G - NBN Frame_Shift_Del p.S537Vfs*9 0.22 TCGA-78-7155-01 8 94767119 94767119 T A TMEM67 5'UTR 0.46 TCGA-78-7155-01 8 95653626 95653628 AGA - ESRP1 In_Frame_Del p.K28del 0.35 TCGA-78-7155-01 8 95746894 95746894 G T DPY19L4 Missense_Mutation p.G55V 0.35 deleterious(0.04) probably_damaging(1) TCGA-78-7155-01 8 9634226 9634226 G C TNKS Missense_Mutation p.A1322P 0.70 tolerated_low_confidence(0.06) benign(0.002) TCGA-78-7155-01 8 98900453 98900453 C A MATN2 Missense_Mutation p.P42Q 0.40 deleterious(0.02) possibly_damaging(0.47) TCGA-78-7155-01 8 98943632 98943632 G T MATN2 Missense_Mutation p.Q198H 0.33 deleterious(0) probably_damaging(0.936) TCGA-78-7155-01 9 101147957 101147957 A T GABBR2 Missense_Mutation p.F543I 0.82 tolerated(0.2) possibly_damaging(0.503) TCGA-78-7155-01 9 104309099 104309099 T G RNF20 Intron 0.76 TCGA-78-7155-01 9 105767812 105767812 C G CYLC2 Missense_Mutation p.A300G 0.79 deleterious(0.04) unknown(0) TCGA-78-7155-01 9 106889718 106889718 A T SMC2 Missense_Mutation p.N916I 0.86 tolerated(0.09) benign(0.009) TCGA-78-7155-01 9 107367234 107367234 G A OR13C2 Silent p.I225I 0.89 TCGA-78-7155-01 9 107380040 107380040 C A OR13C9 Missense_Mutation p.W149L 0.77 deleterious(0.01) probably_damaging(0.999) TCGA-78-7155-01 9 107457184 107457184 C G OR13D1 Missense_Mutation p.P161R 0.77 deleterious(0) probably_damaging(1) TCGA-78-7155-01 9 119625893 119625893 G T ASTN2 Missense_Mutation p.S619Y 0.69 deleterious(0) unknown(0) TCGA-78-7155-01 9 119943402 119943402 C A ASTN2 Intron 0.75 TCGA-78-7155-01 9 120475273 120475273 A G TLR4 Silent p.R289R 0.75 TCGA-78-7155-01 9 121930490 121930490 C A BRINP1 Missense_Mutation p.Q386H 0.86 deleterious(0.03) probably_damaging(0.948) TCGA-78-7155-01 9 125330211 125330211 G T OR1L8 Silent p.L182L 0.83 TCGA-78-7155-01 9 126129486 126129486 G T CRB2 Nonsense_Mutation p.E264* 0.87 TCGA-78-7155-01 9 130269061 130269061 G A FAM129B 3'UTR 0.73 TCGA-78-7155-01 9 131257028 131257028 G T ODF2 Intron 0.85 TCGA-78-7155-01 9 134103702 134103702 A T NUP214 Missense_Mutation p.S2020C 0.88 probably_damaging(0.938) TCGA-78-7155-01 9 135073628 135073628 C A NTNG2 Silent p.P163P 0.77 TCGA-78-7155-01 9 136529095 136529095 C G SARDH Missense_Mutation p.E891D 0.65 tolerated(0.07) probably_damaging(0.999) TCGA-78-7155-01 9 137630602 137630602 G T COL5A1 Missense_Mutation p.G481V 0.83 probably_damaging(1) TCGA-78-7155-01 9 137727020 137727020 C T COL5A1 Silent p.P1780P 0.70 TCGA-78-7155-01 9 138377399 138377399 A T PPP1R26 Missense_Mutation p.K348M 0.78 deleterious(0.01) benign(0.228) TCGA-78-7155-01 9 139090759 139090759 C A LHX3 Missense_Mutation p.V206L 0.97 deleterious(0.05) benign(0.248) TCGA-78-7155-01 9 139617948 139617948 T A FAM69B Missense_Mutation p.C340S 1.00 deleterious(0) probably_damaging(1) TCGA-78-7155-01 9 139912785 139912785 C T ABCA2 Missense_Mutation p.R613Q 0.89 tolerated(0.59) benign(0.013) TCGA-78-7155-01 9 17464561 17464561 G C CNTLN Missense_Mutation p.Q1157H 0.80 deleterious(0.01) probably_damaging(0.983) TCGA-78-7155-01 9 2088558 2088558 G T SMARCA2 Missense_Mutation p.R943I 0.76 possibly_damaging(0.639) TCGA-78-7155-01 9 21304946 21304946 G A IFNA5 Missense_Mutation p.L104F 0.43 deleterious(0.01) probably_damaging(0.989) TCGA-78-7155-01 9 26920328 26920328 T C PLAA Missense_Mutation p.Y365C 0.36 deleterious(0) probably_damaging(0.976) TCGA-78-7155-01 9 32633952 32633952 G T TAF1L Missense_Mutation p.N542K 0.34 tolerated(0.18) benign(0.071) TCGA-78-7155-01 9 33057642 33057642 C A SMU1 Missense_Mutation p.R274I 0.58 deleterious(0) possibly_damaging(0.751) TCGA-78-7155-01 9 33318727 33318727 A G NFX1 Splice_Site p.X530_splice 0.47 TCGA-78-7155-01 9 36087832 36087833 TT - RECK Frame_Shift_Del p.W261Afs*5 0.18 TCGA-78-7155-01 9 37440624 37440625 - CTTA ZBTB5 Frame_Shift_Ins p.A642Vfs*11 0.36 TCGA-78-7155-01 9 38396171 38396171 C T ALDH1B1 Silent p.V142V 0.31 TCGA-78-7155-01 9 404959 404959 G A DOCK8 Missense_Mutation p.M1092I 0.83 deleterious(0.03) benign(0.08) TCGA-78-7155-01 9 43625384 43625384 G T SPATA31A6 Silent p.P1101P 0.11 TCGA-78-7155-01 9 43627789 43627789 C T SPATA31A6 Missense_Mutation p.D300N 0.19 deleterious(0.03) possibly_damaging(0.723) TCGA-78-7155-01 9 43627791 43627791 T G SPATA31A6 Missense_Mutation p.Q299P 0.19 deleterious(0) benign(0.33) TCGA-78-7155-01 9 43627937 43627937 G T SPATA31A6 Silent p.V250V 0.21 TCGA-78-7155-01 9 43709705 43709705 C A CNTNAP3B Silent p.S47S 0.72 TCGA-78-7155-01 9 67968449 67968449 A T ANKRD20A1 Nonsense_Mutation p.K670* 0.48 TCGA-78-7155-01 9 7011843 7011843 C T KDM4C Silent p.H644H 0.86 TCGA-78-7155-01 9 71114172 71114172 A T PGM5 Silent p.S503S 0.78 TCGA-78-7155-01 9 74337423 74337423 T A TMEM2 Missense_Mutation p.L729F 0.74 deleterious(0.05) benign(0.142) TCGA-78-7155-01 9 79955112 79955112 G T VPS13A Missense_Mutation p.D2265Y 0.91 deleterious(0) probably_damaging(0.998) TCGA-78-7155-01 9 84532028 84532028 C A SPATA31D5P RNA 0.79 TCGA-78-7155-01 9 8485268 8485268 A T PTPRD Missense_Mutation p.W1038R 0.91 deleterious(0) probably_damaging(0.995) TCGA-78-7155-01 9 8528692 8528692 C - PTPRD Frame_Shift_Del p.C147Lfs*42 0.47 TCGA-78-7155-01 9 86903039 86903039 C A SLC28A3 Missense_Mutation p.A402S 0.81 deleterious(0.01) probably_damaging(1) TCGA-78-7155-01 9 87636305 87636305 C A NTRK2 Missense_Mutation p.Q824K 0.96 tolerated(0.24) benign(0.349) TCGA-78-7155-01 9 90322028 90322028 G T DAPK1 Missense_Mutation p.G1348W 0.76 deleterious(0.04) benign(0.02) TCGA-78-7155-01 9 95608548 95608548 C - ZNF484 Frame_Shift_Del p.D843Tfs*14 0.45 TCGA-78-7155-01 9 98220396 98220396 C A PTCH1 Missense_Mutation p.G1023C 0.78 deleterious(0.01) probably_damaging(0.959) TCGA-78-7155-01 9 98643552 98643552 A T ERCC6L2 Missense_Mutation p.M161L 0.83 deleterious(0) probably_damaging(0.997) TCGA-78-7155-01 X 101382344 101382344 G A TCEAL2 Missense_Mutation p.R181K 0.73 tolerated(0.25) benign(0.099) TCGA-78-7155-01 X 101396142 101396142 T A TCEAL6 Silent p.P54P 0.75 TCGA-78-7155-01 X 101818239 101818239 G T NXF4 RNA 0.78 TCGA-78-7155-01 X 101972246 101972246 G T GPRASP2 Nonsense_Mutation p.E817* 0.84 TCGA-78-7155-01 X 102192569 102192569 G T RAB40AL Missense_Mutation p.W108L 0.71 deleterious(0) probably_damaging(0.999) TCGA-78-7155-01 X 102192749 102192749 C T RAB40AL Missense_Mutation p.T168M 0.84 tolerated(0.19) benign(0.212) TCGA-78-7155-01 X 103040647 103040647 T A PLP1 Silent p.I47I 0.80 TCGA-78-7155-01 X 107977509 107977509 G T IRS4 Missense_Mutation p.A689D 0.86 deleterious_low_confidence(0) unknown(0) TCGA-78-7155-01 X 108628410 108628410 C T GUCY2F Intron 0.83 TCGA-78-7155-01 X 108708535 108708535 A G GUCY2F Missense_Mutation p.Y290H 0.82 tolerated(0.06) probably_damaging(0.989) TCGA-78-7155-01 X 110463590 110463590 C A PAK3 Missense_Mutation p.P553Q 0.55 tolerated(0.2) benign(0.003) TCGA-78-7155-01 X 111090614 111090614 C T TRPC5 Silent p.L476L 0.72 TCGA-78-7155-01 X 111195290 111195290 C G TRPC5 Missense_Mutation p.R120P 0.88 deleterious(0.04) possibly_damaging(0.502) TCGA-78-7155-01 X 119388873 119388873 G T ZBTB33 Nonsense_Mutation p.E535* 0.84 TCGA-78-7155-01 X 122802161 122802161 A C THOC2 Missense_Mutation p.L289R 0.71 tolerated(0.41) benign(0.223) TCGA-78-7155-01 X 127185830 127185830 C A ACTRT1 Missense_Mutation p.R119L 0.79 deleterious(0) possibly_damaging(0.569) TCGA-78-7155-01 X 12817345 12817345 G T PRPS2 Missense_Mutation p.V48L 0.78 deleterious(0.02) possibly_damaging(0.904) TCGA-78-7155-01 X 129507010 129507013 GTAA - SLC25A14 3'UTR 0.86 TCGA-78-7155-01 X 129629754 129629754 C A RP1-274L7.1 Intron 0.73 TCGA-78-7155-01 X 132351734 132351734 T C TFDP3 Missense_Mutation p.K185R 0.74 tolerated(0.73) possibly_damaging(0.465) TCGA-78-7155-01 X 132445320 132445320 T A GPC4 Missense_Mutation p.Q281H 0.94 deleterious(0.01) possibly_damaging(0.832) TCGA-78-7155-01 X 134983781 134983781 A T SAGE1 Nonsense_Mutation p.R51* 0.84 TCGA-78-7155-01 X 134990679 134990679 T C SAGE1 Silent p.N448N 0.83 TCGA-78-7155-01 X 135047159 135047159 C A MMGT1 3'UTR 0.84 TCGA-78-7155-01 X 135427303 135427303 G T GPR112 Missense_Mutation p.V480L 0.90 deleterious(0.01) benign(0.116) TCGA-78-7155-01 X 135618368 135618368 G T VGLL1 Missense_Mutation p.Q63H 0.82 tolerated(0.29) benign(0.015) TCGA-78-7155-01 X 139586651 139586651 G T SOX3 Missense_Mutation p.A192D 0.75 deleterious(0) probably_damaging(0.998) TCGA-78-7155-01 X 144905527 144905527 G T SLITRK2 Missense_Mutation p.E528D 0.85 tolerated(0.18) benign(0.179) TCGA-78-7155-01 X 148797834 148797834 G C MAGEA11 Missense_Mutation p.V230L 0.77 deleterious(0.02) possibly_damaging(0.53) TCGA-78-7155-01 X 151303310 151303310 G C MAGEA10 Missense_Mutation p.H261Q 0.71 tolerated(0.07) probably_damaging(0.984) TCGA-78-7155-01 X 151821301 151821301 G T GABRQ Missense_Mutation p.V486F 0.80 deleterious(0) benign(0.131) TCGA-78-7155-01 X 152612393 152612393 G C ZNF275 Missense_Mutation p.D84H 0.89 tolerated(0.2) possibly_damaging(0.545) TCGA-78-7155-01 X 152814969 152814969 C A ATP2B3 Missense_Mutation p.D451E 0.72 deleterious(0) possibly_damaging(0.793) TCGA-78-7155-01 X 153490538 153490538 C A OPN1MW2 Missense_Mutation p.L92M 0.95 deleterious(0) probably_damaging(0.996) TCGA-78-7155-01 X 153593005 153593005 C A FLNA Silent p.P637P 0.78 TCGA-78-7155-01 X 153698332 153698332 G T PLXNA3 Missense_Mutation p.R1603L 0.90 tolerated(0.09) probably_damaging(0.978) TCGA-78-7155-01 X 153762266 153762266 C G G6PD Missense_Mutation p.E282Q 0.76 tolerated(0.17) benign(0.334) TCGA-78-7155-01 X 154157366 154157366 T A F8 Nonsense_Mutation p.R1567* 0.75 TCGA-78-7155-01 X 1584744 1584744 C A P2RY8 Silent p.V236V 0.65 TCGA-78-7155-01 X 26212836 26212836 C G MAGEB6 Silent p.L291L 0.81 TCGA-78-7155-01 X 27839475 27839475 G T MAGEB10 Missense_Mutation p.A18S 0.70 deleterious(0.04) possibly_damaging(0.772) TCGA-78-7155-01 X 27998429 27998429 A G DCAF8L1 Silent p.S341S 0.35 TCGA-78-7155-01 X 3238188 3238188 G T MXRA5 Missense_Mutation p.F1846L 0.76 tolerated(0.09) possibly_damaging(0.871) TCGA-78-7155-01 X 3242201 3242201 G T MXRA5 Missense_Mutation p.P509T 0.87 deleterious(0) probably_damaging(1) TCGA-78-7155-01 X 32717412 32717412 T C DMD Splice_Site p.X217_splice 0.53 TCGA-78-7155-01 X 34149284 34149284 C A FAM47A Missense_Mutation p.R371L 0.80 tolerated(0.41) benign(0.103) TCGA-78-7155-01 X 34149686 34149686 G T FAM47A Missense_Mutation p.P237Q 0.86 deleterious(0.02) probably_damaging(0.998) TCGA-78-7155-01 X 34150015 34150015 G T FAM47A Silent p.A127A 0.80 TCGA-78-7155-01 X 38016264 38016264 C - SRPX Frame_Shift_Del p.G325Vfs*35 0.41 TCGA-78-7155-01 X 40531114 40531114 T C MED14 Silent p.P1044P 0.88 TCGA-78-7155-01 X 47836120 47836120 T A ZNF182 Nonsense_Mutation p.K456* 0.80 TCGA-78-7155-01 X 47836531 47836531 C A ZNF182 Nonsense_Mutation p.E319* 0.78 TCGA-78-7155-01 X 48121245 48121245 C A SSX1 Missense_Mutation p.P109T 0.90 tolerated(0.11) benign(0.285) TCGA-78-7155-01 X 48121247 48121247 G C SSX1 Silent p.P109P 0.89 TCGA-78-7155-01 X 48320401 48320401 C A SLC38A5 Missense_Mutation p.D255Y 0.80 deleterious(0) possibly_damaging(0.866) TCGA-78-7155-01 X 48650612 48650612 C A GATA1 Silent p.L194L 0.77 TCGA-78-7155-01 X 50053609 50053609 G T CCNB3 Missense_Mutation p.A814S 0.82 tolerated(0.61) benign(0.117) TCGA-78-7155-01 X 54282275 54282275 A G WNK3 Silent p.P716P 0.07 TCGA-78-7155-01 X 55042087 55042087 C G ALAS2 Silent p.L364L 0.70 TCGA-78-7155-01 X 55513961 55513961 C A USP51 Missense_Mutation p.G471V 0.75 tolerated(0.08) benign(0.144) TCGA-78-7155-01 X 591819 591819 G T SHOX Missense_Mutation p.G63C 0.72 tolerated_low_confidence(0.05) possibly_damaging(0.528) TCGA-78-7155-01 X 63569932 63569932 G T MTMR8 Missense_Mutation p.P163T 0.78 tolerated(0.6) benign(0.002) TCGA-78-7155-01 X 71360027 71360027 G T NHSL2 Missense_Mutation p.V877L 0.72 tolerated(1) benign(0.001) TCGA-78-7155-01 X 72667208 72667208 C G CDX4 Missense_Mutation p.P40R 0.85 deleterious(0) possibly_damaging(0.602) TCGA-78-7155-01 X 73046466 73046466 T G XIST RNA 0.85 TCGA-78-7155-01 X 73070100 73070100 G T XIST RNA 0.93 TCGA-78-7155-01 X 73071845 73071845 G A XIST RNA 1.00 TCGA-78-7155-01 X 75649313 75649313 C T MAGEE1 Silent p.T330T 0.83 TCGA-78-7155-01 X 77528879 77528879 C A CYSLTR1 Missense_Mutation p.C122F 0.69 tolerated(1) benign(0.015) TCGA-78-7155-01 X 79286084 79286084 C G TBX22 Missense_Mutation p.P346R 0.85 deleterious(0) probably_damaging(0.994) TCGA-78-7155-01 X 79947450 79947450 C G BRWD3 Missense_Mutation p.G1118A 0.67 tolerated(0.32) possibly_damaging(0.844) TCGA-78-7155-01 X 88008694 88008694 G T CPXCR1 Missense_Mutation p.Q93H 0.71 deleterious(0.01) possibly_damaging(0.891) TCGA-78-7155-01 X 89177718 89177718 G - TGIF2LX Frame_Shift_Del p.A212Pfs*9 0.35 TCGA-78-7155-01 X 91133128 91133128 C G PCDH11X Nonsense_Mutation p.S630* 0.71 TCGA-78-7155-01 X 91134082 91134082 T A PCDH11X Missense_Mutation p.F948Y 0.72 deleterious(0.01) probably_damaging(0.999) TCGA-78-7156-01 10 101090472 101090472 G T CNNM1 Missense_Mutation p.R443L 0.48 tolerated(0.27) benign(0.079) TCGA-78-7156-01 10 119003718 119003718 G A SLC18A2 Missense_Mutation p.E120K 0.07 tolerated(0.68) benign(0.018) TCGA-78-7156-01 10 124248975 124248975 G T HTRA1 Missense_Mutation p.G204W 0.37 deleterious(0) probably_damaging(1) TCGA-78-7156-01 10 134598651 134598651 G T NKX6-2 Silent p.T201T 0.40 TCGA-78-7156-01 10 26785270 26785270 A T APBB1IP Missense_Mutation p.N37I 0.34 deleterious(0.02) benign(0.027) TCGA-78-7156-01 10 27366275 27366275 G C ANKRD26 Missense_Mutation p.L357V 0.08 tolerated(0.54) benign(0.005) TCGA-78-7156-01 10 27702381 27702381 G T PTCHD3 Missense_Mutation p.P267T 0.40 deleterious(0.03) probably_damaging(0.969) TCGA-78-7156-01 10 48388286 48388286 C A RBP3 Silent p.R864R 0.24 TCGA-78-7156-01 10 5008225 5008225 G C AKR1C1 Missense_Mutation p.K68N 0.40 deleterious(0.01) possibly_damaging(0.638) TCGA-78-7156-01 10 50819502 50819502 C - SLC18A3 Frame_Shift_Del p.G240Afs*9 0.31 TCGA-78-7156-01 10 59955722 59955722 C T IPMK 3'UTR 0.36 TCGA-78-7156-01 10 70044981 70044981 C A PBLD Intron 0.41 TCGA-78-7156-01 10 71966081 71966081 G A PPA1 Missense_Mutation p.T245I 0.42 tolerated(0.18) benign(0.028) TCGA-78-7156-01 10 75397659 75397659 A G MYOZ1 Missense_Mutation p.L32S 0.07 tolerated(0.06) probably_damaging(0.965) TCGA-78-7156-01 10 79553869 79553869 C G DLG5 Missense_Mutation p.Q1851H 0.04 deleterious(0.02) probably_damaging(0.998) TCGA-78-7156-01 10 8115974 8115974 C A GATA3 Silent p.T441T 0.27 TCGA-78-7156-01 11 108550197 108550197 C A DDX10 Nonsense_Mutation p.S253* 0.06 TCGA-78-7156-01 11 118375477 118375477 A G KMT2A Missense_Mutation p.D2957G 0.39 benign(0.367) TCGA-78-7156-01 11 118892538 118892538 G A TRAPPC4 Missense_Mutation p.E175K 0.10 deleterious(0.02) benign(0.428) TCGA-78-7156-01 11 123676362 123676362 C T OR6M1 Silent p.Q232Q 0.10 TCGA-78-7156-01 11 123908901 123908901 C A OR10G7 Missense_Mutation p.V270F 0.38 deleterious(0.03) possibly_damaging(0.756) TCGA-78-7156-01 11 129788547 129788547 C T PRDM10 Missense_Mutation p.D705N 0.04 tolerated(0.14) probably_damaging(0.996) TCGA-78-7156-01 11 16208467 16208467 C A SOX6 Missense_Mutation p.Q190H 0.35 deleterious(0.02) benign(0.017) TCGA-78-7156-01 11 1651399 1651399 G A KRTAP5-5 Missense_Mutation p.G110D 0.35 tolerated_low_confidence(0.16) unknown(0) TCGA-78-7156-01 11 18763858 18763858 C T PTPN5 Missense_Mutation p.E226K 0.10 deleterious(0.03) probably_damaging(0.935) TCGA-78-7156-01 11 18956162 18956162 C T MRGPRX1 Missense_Mutation p.R57H 0.25 tolerated(0.4) benign(0.013) TCGA-78-7156-01 11 2153961 2153961 G T IGF2 3'UTR 0.40 TCGA-78-7156-01 11 26702698 26702698 G T SLC5A12 Missense_Mutation p.P460H 0.43 deleterious(0) probably_damaging(1) TCGA-78-7156-01 11 34492577 34492577 G A CAT Missense_Mutation p.E503K 0.37 tolerated(0.38) benign(0) TCGA-78-7156-01 11 46880824 46880824 C A LRP4 Missense_Mutation p.V1810L 0.41 tolerated_low_confidence(0.22) benign(0.013) TCGA-78-7156-01 11 46880825 46880825 G A LRP4 Silent p.I1809I 0.41 TCGA-78-7156-01 11 5220994 5220994 G T OR51V1 Missense_Mutation p.L313I 0.30 tolerated(0.42) benign(0.002) TCGA-78-7156-01 11 5275915 5275915 A G HBG2 Missense_Mutation p.L15P 0.22 deleterious(0) probably_damaging(0.996) TCGA-78-7156-01 11 55339784 55339784 C T OR4C16 Missense_Mutation p.L61F 0.39 deleterious(0) probably_damaging(0.95) TCGA-78-7156-01 11 55339854 55339854 T - OR4C16 Frame_Shift_Del p.L85* 0.29 TCGA-78-7156-01 11 55419048 55419048 G A OR4S2 Silent p.L223L 0.03 TCGA-78-7156-01 11 5566148 5566148 G A OR52H1 Silent p.I202I 0.07 TCGA-78-7156-01 11 55798039 55798039 G T OR5AS1 Missense_Mutation p.V49F 0.30 deleterious(0.02) possibly_damaging(0.647) TCGA-78-7156-01 11 57947780 57947780 C A OR9Q1 Silent p.I288I 0.36 TCGA-78-7156-01 11 57958145 57958145 C A OR9Q2 Missense_Mutation p.F61L 0.10 deleterious(0.01) possibly_damaging(0.76) TCGA-78-7156-01 11 61641287 61641287 C A FADS3 Nonstop_Mutation p.*446Lext*72 0.24 TCGA-78-7156-01 11 62298096 62298096 G A AHNAK Missense_Mutation p.P1265S 0.35 probably_damaging(0.999) TCGA-78-7156-01 11 65293594 65293594 G A SCYL1 Splice_Site p.X126_splice 0.44 TCGA-78-7156-01 11 6621898 6621898 C A RRP8 Splice_Site p.X385_splice 0.33 TCGA-78-7156-01 11 67021879 67021879 C G KDM2A Silent p.L1099L 0.42 TCGA-78-7156-01 11 75001077 75001077 G A ARRB1 Silent p.F9F 0.37 TCGA-78-7156-01 11 77070063 77070063 C G PAK1 Splice_Site p.X160_splice 0.05 TCGA-78-7156-01 11 77991824 77991824 C T GAB2 Missense_Mutation p.E67K 0.38 deleterious(0.01) possibly_damaging(0.562) TCGA-78-7156-01 11 85375271 85375271 C T CREBZF Missense_Mutation p.A217T 0.10 deleterious(0.01) probably_damaging(0.993) TCGA-78-7156-01 12 101705831 101705831 G A UTP20 Missense_Mutation p.D777N 0.04 tolerated(0.3) benign(0.001) TCGA-78-7156-01 12 108086843 108086843 G A PWP1 Missense_Mutation p.E158K 0.10 deleterious(0.02) benign(0.293) TCGA-78-7156-01 12 108604015 108604015 C A WSCD2 Missense_Mutation p.S205R 0.50 deleterious(0.03) benign(0.297) TCGA-78-7156-01 12 109182309 109182309 C A SSH1 Missense_Mutation p.G869C 0.41 tolerated_low_confidence(0.06) benign(0.285) TCGA-78-7156-01 12 109862602 109862602 C A MYO1H Missense_Mutation p.A549D 0.39 tolerated(0.29) benign(0.156) TCGA-78-7156-01 12 11463272 11463272 C A PRB4 Nonsense_Mutation p.E21* 0.37 TCGA-78-7156-01 12 121881557 121881557 G A KDM2B Missense_Mutation p.L831F 0.35 tolerated(0.55) benign(0.018) TCGA-78-7156-01 12 122017946 122017946 C G KDM2B Intron 0.05 TCGA-78-7156-01 12 122150869 122150869 A T TMEM120B Missense_Mutation p.Q23L 0.40 deleterious(0.04) benign(0.077) TCGA-78-7156-01 12 13761752 13761752 A T GRIN2B Missense_Mutation p.S599T 0.34 tolerated(0.22) possibly_damaging(0.829) TCGA-78-7156-01 12 1895113 1895113 C A ADIPOR2 Missense_Mutation p.H346N 0.04 deleterious(0.04) benign(0.081) TCGA-78-7156-01 12 24048791 24048791 G T SOX5 Missense_Mutation p.P69Q 0.39 tolerated_low_confidence(0.17) benign(0.051) TCGA-78-7156-01 12 26835601 26835601 G C ITPR2 Nonsense_Mutation p.S385* 0.04 TCGA-78-7156-01 12 32908789 32908789 C G YARS2 Missense_Mutation p.R7P 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.502) TCGA-78-7156-01 12 38714293 38714293 C G ALG10B Missense_Mutation p.L234V 0.09 tolerated(0.21) benign(0.011) TCGA-78-7156-01 12 53421875 53421875 C T EIF4B Silent p.G294G 0.09 TCGA-78-7156-01 12 53879207 53879207 T A MAP3K12 Nonsense_Mutation p.K292* 0.38 TCGA-78-7156-01 12 55524082 55524082 G T OR9K2 Missense_Mutation p.G177V 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-78-7156-01 12 64062106 64062106 C A DPY19L2 Missense_Mutation p.R23L 0.39 tolerated_low_confidence(0.19) benign(0.006) TCGA-78-7156-01 12 70189195 70189195 A T RAB3IP Intron 0.35 TCGA-78-7156-01 12 72372729 72372729 T A TPH2 Intron 0.35 TCGA-78-7156-01 12 75672714 75672714 C A CAPS2 Intron 0.35 TCGA-78-7156-01 13 23913577 23913577 C A SACS Nonsense_Mutation p.E1480* 0.37 TCGA-78-7156-01 13 25479865 25479865 C T CENPJ Missense_Mutation p.E771K 0.11 tolerated(0.45) benign(0.045) TCGA-78-7156-01 13 29600969 29600969 G T MTUS2 Nonsense_Mutation p.G722* 0.39 TCGA-78-7156-01 13 31495969 31495969 G T MEDAG Missense_Mutation p.S258I 0.36 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-78-7156-01 13 46050481 46050481 A G COG3 Missense_Mutation p.Q107R 0.29 deleterious(0.01) benign(0.421) TCGA-78-7156-01 13 46050484 46050484 T A COG3 Splice_Site p.X107_splice 0.30 TCGA-78-7156-01 13 50586524 50586524 G C TRIM13 Missense_Mutation p.E153Q 0.04 deleterious(0.02) benign(0.199) TCGA-78-7156-01 13 58208112 58208112 G T PCDH17 Missense_Mutation p.V478L 0.52 tolerated(0.43) benign(0.01) TCGA-78-7156-01 14 100801257 100801257 C T WARS Silent p.V457V 0.04 TCGA-78-7156-01 14 106208719 106208719 G T IGHG1 Missense_Mutation p.P100H 0.36 deleterious(0.03) benign(0.006) TCGA-78-7156-01 14 19378148 19378149 CC - OR11H12 Frame_Shift_Del p.P186Kfs*4 0.09 TCGA-78-7156-01 14 20344916 20344916 C A OR4K2 Missense_Mutation p.L164I 0.05 tolerated(0.24) possibly_damaging(0.795) TCGA-78-7156-01 14 20692590 20692590 G T OR11H6 Missense_Mutation p.R241I 0.45 tolerated(0.11) benign(0.072) TCGA-78-7156-01 14 24787633 24787633 T G ADCY4 Missense_Mutation p.T1075P 0.36 deleterious_low_confidence(0.03) benign(0.132) TCGA-78-7156-01 14 32624010 32624010 A G ARHGAP5 Silent p.V1455V 0.43 TCGA-78-7156-01 14 47342758 47342758 A T MDGA2 Nonsense_Mutation p.L877* 0.34 TCGA-78-7156-01 14 50044243 50044243 T A RPS29 3'UTR 0.42 TCGA-78-7156-01 14 61447680 61447680 C A TRMT5 Splice_Site p.X4_splice 0.28 TCGA-78-7156-01 14 68222664 68222664 C A ZFYVE26 Splice_Site p.X2262_splice 0.43 TCGA-78-7156-01 14 70714347 70714347 T A ADAM21P1 RNA 0.20 TCGA-78-7156-01 14 74059066 74059066 C A ACOT4 Silent p.R135R 0.44 TCGA-78-7156-01 14 74443113 74443113 G C ENTPD5 Missense_Mutation p.Q186E 0.13 tolerated(0.28) benign(0.314) TCGA-78-7156-01 14 77580090 77580090 C G CIPC Missense_Mutation p.S210C 0.05 deleterious(0.03) possibly_damaging(0.494) TCGA-78-7156-01 14 92258854 92258854 G C TC2N Missense_Mutation p.L302V 0.06 deleterious(0.01) possibly_damaging(0.665) TCGA-78-7156-01 14 95030088 95030088 C T SERPINA4 Missense_Mutation p.S90F 0.41 deleterious(0) probably_damaging(0.996) TCGA-78-7156-01 15 22332734 22332734 G A RP11-69H14.6 RNA 0.23 TCGA-78-7156-01 15 22382892 22382892 C T OR4N4 Silent p.A140A 0.23 TCGA-78-7156-01 15 23003124 23003124 C T CYFIP1 3'UTR 0.18 TCGA-78-7156-01 15 23811405 23811405 C - MKRN3 Frame_Shift_Del p.P161Rfs*10 0.26 TCGA-78-7156-01 15 31819488 31819488 C T OTUD7A Missense_Mutation p.D226N 0.16 tolerated(0.06) probably_damaging(0.999) TCGA-78-7156-01 15 34649603 34649603 C A NUTM1 Missense_Mutation p.L1104M 0.38 tolerated(0.06) probably_damaging(0.935) TCGA-78-7156-01 15 40504704 40504704 C G BUB1B Missense_Mutation p.S797C 0.13 tolerated(0.14) possibly_damaging(0.682) TCGA-78-7156-01 15 40861844 40861844 G A RPUSD2 Missense_Mutation p.R103Q 0.37 deleterious(0.04) probably_damaging(0.964) TCGA-78-7156-01 15 41988856 41988856 C T MGA Nonsense_Mutation p.Q550* 0.51 TCGA-78-7156-01 15 42041410 42041410 C G MGA Missense_Mutation p.Q1869E 0.12 deleterious(0) possibly_damaging(0.74) TCGA-78-7156-01 15 54307337 54307337 C A UNC13C Missense_Mutation p.S746Y 0.37 deleterious_low_confidence(0) benign(0.429) TCGA-78-7156-01 15 56387666 56387666 G A RFX7 Missense_Mutation p.P754S 0.35 tolerated_low_confidence(0.05) possibly_damaging(0.869) TCGA-78-7156-01 15 59179181 59179181 C T SLTM Missense_Mutation p.G943E 0.08 tolerated(0.13) probably_damaging(0.914) TCGA-78-7156-01 15 65871944 65871944 C T VWA9 Silent p.L396L 0.12 TCGA-78-7156-01 15 68119197 68119197 C T SKOR1 Intron 0.44 TCGA-78-7156-01 15 72030138 72030138 G C THSD4 Missense_Mutation p.R566S 0.42 tolerated(0.42) benign(0.001) TCGA-78-7156-01 15 85326329 85326329 C A ZNF592 Missense_Mutation p.F141L 0.11 deleterious(0.03) probably_damaging(0.994) TCGA-78-7156-01 15 85327622 85327622 C T ZNF592 Silent p.L572L 0.09 TCGA-78-7156-01 15 87572138 87572138 G T AGBL1 3'UTR 0.24 TCGA-78-7156-01 16 10274192 10274192 G A GRIN2A Missense_Mutation p.A26V 0.55 tolerated(0.53) benign(0.002) TCGA-78-7156-01 16 10626919 10626919 T A EMP2 Missense_Mutation p.Y116F 0.31 deleterious(0) probably_damaging(0.999) TCGA-78-7156-01 16 1453189 1453189 C A UNKL Silent p.R148R 0.29 TCGA-78-7156-01 16 1537824 1537824 C A PTX4 Missense_Mutation p.V92L 0.25 tolerated(0.19) benign(0.023) TCGA-78-7156-01 16 1961911 1961911 G A HS3ST6 Missense_Mutation p.R206C 0.04 deleterious(0.04) benign(0.064) TCGA-78-7156-01 16 30770937 30770937 G A C16orf93 Intron 0.27 TCGA-78-7156-01 16 3339518 3339518 C G ZNF263 Missense_Mutation p.H338D 0.03 tolerated(0.63) benign(0) TCGA-78-7156-01 16 3786117 3786117 C T CREBBP Missense_Mutation p.E1550K 0.04 unknown(0) TCGA-78-7156-01 16 47005275 47005275 C G DNAJA2 Missense_Mutation p.M116I 0.09 tolerated(0.1) benign(0.008) TCGA-78-7156-01 16 50745221 50745221 G A NOD2 Missense_Mutation p.D467N 0.04 tolerated(0.21) benign(0.258) TCGA-78-7156-01 16 61823353 61823353 C T CDH8 Silent p.R437R 0.41 TCGA-78-7156-01 16 67691688 67691688 G A ACD Silent p.L511L 0.08 TCGA-78-7156-01 16 783371 783371 C G NARFL Missense_Mutation p.K250N 0.25 deleterious(0) probably_damaging(0.981) TCGA-78-7156-01 16 81097348 81097348 C A C16orf46 Intron 0.53 TCGA-78-7156-01 16 84520565 84520565 C G TLDC1 Silent p.L210L 0.07 TCGA-78-7156-01 16 89736032 89736032 C T SPATA33 3'UTR 0.40 TCGA-78-7156-01 16 90072838 90072838 C G DBNDD1 Missense_Mutation p.E148Q 0.09 deleterious_low_confidence(0.03) probably_damaging(0.966) TCGA-78-7156-01 17 10250001 10250001 T A MYH13 Missense_Mutation p.Q420L 0.48 deleterious(0.02) benign(0.016) TCGA-78-7156-01 17 11795148 11795148 C A DNAH9 Missense_Mutation p.L3723I 0.38 benign(0.001) TCGA-78-7156-01 17 18862054 18862054 G A SLC5A10 Missense_Mutation p.M57I 0.34 tolerated(0.05) benign(0.044) TCGA-78-7156-01 17 33475347 33475347 A G UNC45B Missense_Mutation p.Y22C 0.25 deleterious(0.01) probably_damaging(0.971) TCGA-78-7156-01 17 3446879 3446879 G T TRPV3 Missense_Mutation p.L119M 0.40 tolerated(0.22) benign(0.221) TCGA-78-7156-01 17 3629172 3629172 G A GSG2 Missense_Mutation p.R648Q 0.08 deleterious(0) probably_damaging(1) TCGA-78-7156-01 17 38068750 38068750 C T GSDMB Missense_Mutation p.G79D 0.55 tolerated(0.12) benign(0.346) TCGA-78-7156-01 17 39092802 39092802 G A KRT23 Silent p.A18A 0.27 TCGA-78-7156-01 17 39661387 39661387 C T KRT13 Nonsense_Mutation p.W139* 0.62 TCGA-78-7156-01 17 39742866 39742866 C A KRT14 Missense_Mutation p.S74I 0.67 tolerated(0.34) unknown(0) TCGA-78-7156-01 17 42992602 42992602 C G GFAP Missense_Mutation p.E85Q 0.57 deleterious(0) probably_damaging(0.958) TCGA-78-7156-01 17 48773275 48773275 G C ANKRD40 3'UTR 0.11 TCGA-78-7156-01 17 56597778 56597778 G A SEPT4 3'UTR 0.12 TCGA-78-7156-01 17 59853848 59853848 C G BRIP1 Missense_Mutation p.E671Q 0.07 tolerated(0.06) possibly_damaging(0.84) TCGA-78-7156-01 17 59858314 59858314 G A BRIP1 Nonsense_Mutation p.Q561* 0.06 TCGA-78-7156-01 17 62856185 62856185 G T LRRC37A3 Nonsense_Mutation p.S1360* 0.05 TCGA-78-7156-01 17 64880786 64880786 C A CACNG5 Intron 0.44 TCGA-78-7156-01 17 64880787 64880787 C A CACNG5 Intron 0.45 TCGA-78-7156-01 17 66270079 66270079 C A SLC16A6 Missense_Mutation p.G122V 0.40 deleterious(0) probably_damaging(1) TCGA-78-7156-01 17 7139891 7139893 GAC AA PHF23 Frame_Shift_Del p.R118Lfs*14 0.23 TCGA-78-7156-01 17 80159691 80159691 C T CCDC57 Missense_Mutation p.E44K 0.32 tolerated(0.13) benign(0.062) TCGA-78-7156-01 17 8079142 8079142 G A TMEM107 Silent p.L69L 0.05 TCGA-78-7156-01 18 13105057 13105057 G A CEP192 Silent p.L2342L 0.04 TCGA-78-7156-01 18 18600168 18600168 C A ROCK1 Silent p.L435L 0.27 TCGA-78-7156-01 18 19209061 19209061 C T SNRPD1 Missense_Mutation p.R108C 0.18 tolerated(0.06) unknown(0) TCGA-78-7156-01 18 54629724 54629724 A T WDR7 Silent p.S1376S 0.32 TCGA-78-7156-01 18 59195350 59195350 G C CDH20 Missense_Mutation p.E390Q 0.04 tolerated(0.18) benign(0.03) TCGA-78-7156-01 18 61322930 61322930 G T SERPINB3 Silent p.T378T 0.29 TCGA-78-7156-01 18 61569653 61569653 G T SERPINB2 Missense_Mutation p.V232L 0.30 deleterious(0) probably_damaging(0.999) TCGA-78-7156-01 18 63547748 63547748 G T CDH7 Missense_Mutation p.G659V 0.31 deleterious(0) probably_damaging(0.996) TCGA-78-7156-01 18 67992759 67992759 G C SOCS6 Silent p.V285V 0.03 TCGA-78-7156-01 19 10600425 10600425 C - KEAP1 Frame_Shift_Del p.G477Afs*23 0.43 TCGA-78-7156-01 19 10822872 10822872 G T QTRT1 Missense_Mutation p.G228W 0.61 deleterious(0) probably_damaging(1) TCGA-78-7156-01 19 1221313 1221314 - C STK11 Frame_Shift_Ins p.L282Afs*3 0.35 TCGA-78-7156-01 19 12542639 12542639 G A ZNF443 Missense_Mutation p.S116L 0.05 deleterious(0.05) probably_damaging(0.968) TCGA-78-7156-01 19 1497281 1497281 C T REEP6 3'UTR 0.78 TCGA-78-7156-01 19 15529760 15529760 G T AKAP8L 5'UTR 0.47 TCGA-78-7156-01 19 15529781 15529781 G A AKAP8L 5'UTR 0.41 TCGA-78-7156-01 19 2216400 2216400 G T DOT1L Nonsense_Mutation p.E682* 0.64 TCGA-78-7156-01 19 30505953 30505953 G T URI1 Missense_Mutation p.A529S 0.31 deleterious(0.03) benign(0.165) TCGA-78-7156-01 19 3163000 3163000 G A GNA15 Missense_Mutation p.E370K 0.10 tolerated(0.07) possibly_damaging(0.528) TCGA-78-7156-01 19 33465037 33465037 G C C19orf40 Missense_Mutation p.Q105H 0.05 deleterious(0) probably_damaging(0.996) TCGA-78-7156-01 19 39116723 39116723 G T EIF3K Missense_Mutation p.C112F 0.42 deleterious(0.02) possibly_damaging(0.78) TCGA-78-7156-01 19 39212308 39212308 C T ACTN4 Silent p.A474A 0.07 TCGA-78-7156-01 19 40761077 40761077 G A AKT2 Missense_Mutation p.S92F 0.07 deleterious(0) possibly_damaging(0.863) TCGA-78-7156-01 19 42190823 42190823 T G CEACAM7 Missense_Mutation p.N132H 0.41 deleterious(0.01) possibly_damaging(0.862) TCGA-78-7156-01 19 46998814 46998814 C T PNMAL2 5'UTR 0.43 TCGA-78-7156-01 19 51875207 51875207 G T NKG7 Silent p.L142L 0.06 TCGA-78-7156-01 19 53013909 53013909 G C ZNF578 Missense_Mutation p.R92T 0.09 deleterious(0.05) probably_damaging(0.99) TCGA-78-7156-01 19 54973285 54973285 C G LENG9 Missense_Mutation p.E497D 0.14 tolerated(0.07) benign(0.083) TCGA-78-7156-01 19 55086414 55086414 G C LILRA2 Missense_Mutation p.R190T 0.60 tolerated(0.09) probably_damaging(1) TCGA-78-7156-01 19 5604655 5604655 C G SAFB2 Missense_Mutation p.V500L 0.10 tolerated(0.3) benign(0.009) TCGA-78-7156-01 19 5700844 5700844 C G LONP1 Missense_Mutation p.E488Q 0.12 deleterious(0) possibly_damaging(0.856) TCGA-78-7156-01 19 9057032 9057032 G A MUC16 Silent p.S10138S 0.62 TCGA-78-7156-01 1 102269863 102269863 C T OLFM3 Nonsense_Mutation p.W436* 0.05 TCGA-78-7156-01 1 115218551 115218551 C G AMPD1 Missense_Mutation p.E521Q 0.12 tolerated(0.06) benign(0.028) TCGA-78-7156-01 1 11708696 11708696 C A FBXO2 3'UTR 0.49 TCGA-78-7156-01 1 117150605 117150605 C A IGSF3 Missense_Mutation p.S394I 0.04 deleterious(0.01) possibly_damaging(0.589) TCGA-78-7156-01 1 12920106 12920106 G A PRAMEF2 Silent p.G282G 0.36 TCGA-78-7156-01 1 142700193 142700193 A T RP11-417J8.6 RNA 0.20 TCGA-78-7156-01 1 148594619 148594619 G T NBPF15 Missense_Mutation p.M664I 0.26 tolerated_low_confidence(0.24) benign(0.001) TCGA-78-7156-01 1 152083562 152083562 C T TCHH Missense_Mutation p.E711K 0.08 unknown(0) TCGA-78-7156-01 1 152281732 152281732 C A FLG Missense_Mutation p.G1877V 0.26 probably_damaging(0.988) TCGA-78-7156-01 1 154960559 154960559 C G FLAD1 Intron 0.04 TCGA-78-7156-01 1 155291357 155291357 C G RUSC1 Intron 0.38 TCGA-78-7156-01 1 155584553 155584553 C G MSTO1 3'UTR 0.04 TCGA-78-7156-01 1 158596715 158596715 G C SPTA1 Missense_Mutation p.A1916G 0.57 deleterious(0.04) possibly_damaging(0.714) TCGA-78-7156-01 1 15892593 15892593 C A DNAJC16 Silent p.R566R 0.05 TCGA-78-7156-01 1 159175306 159175306 G A DARC Nonsense_Mutation p.W28* 0.57 TCGA-78-7156-01 1 160160688 160160688 G C CASQ1 Silent p.V49V 0.08 TCGA-78-7156-01 1 160846509 160846509 C G ITLN1 Missense_Mutation p.G296A 0.49 tolerated(0.09) benign(0.009) TCGA-78-7156-01 1 161695914 161695914 G A FCRLB Intron 0.19 TCGA-78-7156-01 1 166819557 166819557 G A POGK Missense_Mutation p.D581N 0.07 deleterious(0.03) benign(0.039) TCGA-78-7156-01 1 170705451 170705451 C A PRRX1 3'UTR 0.32 TCGA-78-7156-01 1 173155562 173155562 G A TNFSF4 3'UTR 0.58 TCGA-78-7156-01 1 175046636 175046636 C G TNN Missense_Mutation p.L28V 0.07 tolerated(0.1) benign(0.11) TCGA-78-7156-01 1 19609333 19609333 C A AKR7A3 Missense_Mutation p.E296D 0.56 deleterious(0.04) benign(0.275) TCGA-78-7156-01 1 203743051 203743051 G A LAX1 Missense_Mutation p.A147T 0.31 tolerated(0.45) benign(0.008) TCGA-78-7156-01 1 206681283 206681283 G A RASSF5 Silent p.P116P 0.59 TCGA-78-7156-01 1 21306897 21306897 A T EIF4G3 Nonsense_Mutation p.Y92* 0.48 TCGA-78-7156-01 1 215901717 215901717 A T USH2A Silent p.A3907A 0.07 TCGA-78-7156-01 1 21928252 21928252 C A RAP1GAP Missense_Mutation p.G590V 0.42 tolerated(0.09) benign(0.069) TCGA-78-7156-01 1 222805617 222805617 C G MIA3 Missense_Mutation p.H1094D 0.07 tolerated(0.44) benign(0) TCGA-78-7156-01 1 223395345 223395345 C T SUSD4 3'UTR 0.18 TCGA-78-7156-01 1 228612884 228612884 G T HIST3H3 Missense_Mutation p.A48E 0.54 deleterious_low_confidence(0) possibly_damaging(0.812) TCGA-78-7156-01 1 24687417 24687417 G A STPG1 Silent p.F284F 0.11 TCGA-78-7156-01 1 247769413 247769413 C T OR2G3 Missense_Mutation p.H176Y 0.56 deleterious(0) probably_damaging(1) TCGA-78-7156-01 1 247902005 247902005 C T OR14K1 Missense_Mutation p.S30L 0.31 tolerated(1) benign(0.001) TCGA-78-7156-01 1 26887564 26887564 C T RPS6KA1 Missense_Mutation p.S466L 0.09 deleterious(0.01) benign(0.108) TCGA-78-7156-01 1 26887581 26887581 C T RPS6KA1 Missense_Mutation p.L472F 0.10 deleterious(0.02) probably_damaging(0.974) TCGA-78-7156-01 1 27105682 27105682 G T ARID1A Nonsense_Mutation p.E1765* 0.39 TCGA-78-7156-01 1 36228076 36228076 C T CLSPN Missense_Mutation p.E251K 0.05 deleterious(0.04) benign(0.006) TCGA-78-7156-01 1 36934859 36934859 C T CSF3R Splice_Site p.X492_splice 0.44 TCGA-78-7156-01 1 39782166 39782166 C T MACF1 Missense_Mutation p.L1190F 0.36 benign(0.265) TCGA-78-7156-01 1 39919444 39919444 C T MACF1 Silent p.V4877V 0.04 TCGA-78-7156-01 1 57372339 57372339 G T C8A Splice_Site p.X366_splice 0.40 TCGA-78-7156-01 1 5935129 5935129 C T NPHP4 Missense_Mutation p.R950Q 0.37 tolerated(0.06) benign(0.193) TCGA-78-7156-01 1 6171840 6171840 G A CHD5 Silent p.I1748I 0.08 TCGA-78-7156-01 1 6324725 6324725 C T ACOT7 Missense_Mutation p.E359K 0.14 deleterious(0) benign(0.319) TCGA-78-7156-01 1 68948046 68948046 C A DEPDC1 Missense_Mutation p.G482V 0.35 tolerated(0.1) possibly_damaging(0.851) TCGA-78-7156-01 1 7997783 7997783 T C TNFRSF9 Missense_Mutation p.D127G 0.39 tolerated(0.06) benign(0.109) TCGA-78-7156-01 1 97270362 97270362 C T PTBP2 Missense_Mutation p.P304L 0.06 deleterious(0.03) benign(0.346) TCGA-78-7156-01 20 20023130 20023130 C G CRNKL1 Missense_Mutation p.D496H 0.07 deleterious(0) probably_damaging(0.984) TCGA-78-7156-01 20 42331447 42331447 C T MYBL2 Silent p.V423V 0.09 TCGA-78-7156-01 20 44452748 44452748 G C TNNC2 Missense_Mutation p.I111M 0.04 deleterious(0) possibly_damaging(0.841) TCGA-78-7156-01 20 45867661 45867661 G A ZMYND8 Missense_Mutation p.R836W 0.37 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-78-7156-01 20 46386098 46386098 G A SULF2 Missense_Mutation p.P4S 0.46 tolerated_low_confidence(0.48) benign(0.013) TCGA-78-7156-01 20 62038061 62038061 G T KCNQ2 Missense_Mutation p.P852Q 0.42 deleterious(0.05) probably_damaging(0.986) TCGA-78-7156-01 20 62223949 62223949 C T GMEB2 Missense_Mutation p.E256K 0.10 deleterious(0) benign(0.345) TCGA-78-7156-01 20 8705382 8705382 C T PLCB1 Missense_Mutation p.S554L 0.32 deleterious(0) probably_damaging(0.997) TCGA-78-7156-01 21 11098857 11098857 C A BAGE2 RNA 0.30 TCGA-78-7156-01 21 32185545 32185545 G A KRTAP8-1 5'UTR 0.09 TCGA-78-7156-01 21 38126640 38126640 C A HLCS Missense_Mutation p.Q696H 0.35 deleterious(0) probably_damaging(0.963) TCGA-78-7156-01 21 39763602 39763602 C T ERG Missense_Mutation p.E291K 0.38 tolerated(0.54) benign(0.004) TCGA-78-7156-01 21 40824019 40824019 C G SH3BGR Silent p.V62V 0.05 TCGA-78-7156-01 21 42719025 42719025 A C FAM3B Silent p.T161T 0.31 TCGA-78-7156-01 21 45798968 45798968 A T TRPM2 Missense_Mutation p.N368I 0.40 deleterious(0.01) benign(0.089) TCGA-78-7156-01 21 45877273 45877273 C A LRRC3 Missense_Mutation p.S249Y 0.09 deleterious(0.02) possibly_damaging(0.572) TCGA-78-7156-01 22 20819347 20819347 C A KLHL22 Missense_Mutation p.G304W 0.38 deleterious(0) probably_damaging(0.999) TCGA-78-7156-01 22 33670352 33670352 C A LARGE 3'UTR 0.33 TCGA-78-7156-01 22 41657569 41657569 G A RANGAP1 Silent p.L166L 0.38 TCGA-78-7156-01 22 42057418 42057418 C T XRCC6 Missense_Mutation p.P536S 0.11 deleterious(0.05) possibly_damaging(0.512) TCGA-78-7156-01 22 50987960 50987960 C A KLHDC7B Silent p.T455T 0.39 TCGA-78-7156-01 2 168115168 168115168 G C XIRP2 3'UTR 0.10 TCGA-78-7156-01 2 169783672 169783672 G A ABCB11 Silent p.L1204L 0.36 TCGA-78-7156-01 2 197184551 197184551 C T HECW2 Missense_Mutation p.E355K 0.07 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-78-7156-01 2 206608091 206608091 G C NRP2 Missense_Mutation p.E486Q 0.09 deleterious(0.05) probably_damaging(0.961) TCGA-78-7156-01 2 220500158 220500158 G T SLC4A3 Nonsense_Mutation p.E665* 0.26 TCGA-78-7156-01 2 220504391 220504391 G T SLC4A3 Missense_Mutation p.D1098Y 0.41 deleterious(0.02) possibly_damaging(0.795) TCGA-78-7156-01 2 225721621 225721621 C G DOCK10 Missense_Mutation p.K588N 0.14 deleterious(0) possibly_damaging(0.786) TCGA-78-7156-01 2 228220473 228220473 G A MFF Missense_Mutation p.R298Q 0.03 deleterious(0.01) possibly_damaging(0.825) TCGA-78-7156-01 2 228856021 228856021 C A SPHKAP Missense_Mutation p.K1581N 0.38 tolerated(0.38) benign(0.003) TCGA-78-7156-01 2 231033806 231033806 G C SP110 3'UTR 0.04 TCGA-78-7156-01 2 232952246 232952246 C T DIS3L2 Missense_Mutation p.S139L 0.07 tolerated(0.18) benign(0.012) TCGA-78-7156-01 2 239016612 239016612 G C ESPNL Missense_Mutation p.E285Q 0.09 deleterious(0) probably_damaging(0.998) TCGA-78-7156-01 2 242577089 242577089 G A ATG4B 5'UTR 0.11 TCGA-78-7156-01 2 27822465 27822465 C T ZNF512 Missense_Mutation p.S98L 0.29 tolerated_low_confidence(0.16) benign(0) TCGA-78-7156-01 2 28761185 28761185 G C PLB1 Splice_Site p.X186_splice 0.31 TCGA-78-7156-01 2 29368120 29368120 G A CLIP4 Missense_Mutation p.G303E 0.05 deleterious(0) probably_damaging(0.972) TCGA-78-7156-01 2 29606635 29606635 A T ALK Silent p.S415S 0.45 TCGA-78-7156-01 2 37395098 37395098 C T SULT6B1 Missense_Mutation p.E260K 0.11 tolerated(0.07) benign(0.005) TCGA-78-7156-01 2 42990430 42990430 A G OXER1 Missense_Mutation p.L297P 0.45 deleterious(0) probably_damaging(1) TCGA-78-7156-01 2 44102490 44102490 C A ABCG8 Missense_Mutation p.A565D 0.40 deleterious(0.01) probably_damaging(0.965) TCGA-78-7156-01 2 51255218 51255218 C T NRXN1 Missense_Mutation p.G65D 0.48 deleterious(0) probably_damaging(0.962) TCGA-78-7156-01 2 64112839 64112839 A G UGP2 Missense_Mutation p.Y231C 0.43 tolerated(0.13) benign(0.033) TCGA-78-7156-01 2 71801348 71801349 - GCGGAT DYSF In_Frame_Ins p.E1083_G1084insAD 0.35 TCGA-78-7156-01 2 72360362 72360362 C A CYP26B1 Silent p.L312L 0.35 TCGA-78-7156-01 2 72360363 72360363 A G CYP26B1 Missense_Mutation p.L312P 0.36 deleterious(0) probably_damaging(0.999) TCGA-78-7156-01 2 73451084 73451084 A G SMYD5 Missense_Mutation p.E298G 0.37 tolerated(0.16) benign(0.011) TCGA-78-7156-01 2 79349128 79349128 C A REG1A Missense_Mutation p.N66K 0.41 tolerated(1) benign(0.006) TCGA-78-7156-01 2 90229516 90229516 G T IGKV1D-42 Missense_Mutation p.Q112H 0.35 tolerated(0.05) benign(0.153) TCGA-78-7156-01 2 90229517 90229517 G T IGKV1D-42 Missense_Mutation p.D113Y 0.33 tolerated(1) benign(0.002) TCGA-78-7156-01 3 10291093 10291093 C T TATDN2 Missense_Mutation p.S70F 0.11 tolerated_low_confidence(0.05) benign(0.413) TCGA-78-7156-01 3 10312076 10312076 G A TATDN2 Missense_Mutation p.D404N 0.06 tolerated(0.22) benign(0.014) TCGA-78-7156-01 3 112724627 112724627 C A C3orf17 Missense_Mutation p.W487L 0.37 tolerated(0.68) benign(0.004) TCGA-78-7156-01 3 121305102 121305102 T A ARGFX Missense_Mutation p.S201R 0.38 tolerated(0.13) benign(0.005) TCGA-78-7156-01 3 130683838 130683838 G C ATP2C1 Missense_Mutation p.K391N 0.35 tolerated(0.15) benign(0.18) TCGA-78-7156-01 3 133666133 133666133 G C SLCO2A1 Missense_Mutation p.S421C 0.32 deleterious(0.02) probably_damaging(0.951) TCGA-78-7156-01 3 147113967 147113967 C A ZIC4 Missense_Mutation p.M170I 0.30 deleterious(0.03) possibly_damaging(0.48) TCGA-78-7156-01 3 158310301 158310301 C T MLF1 Silent p.L58L 0.05 TCGA-78-7156-01 3 16399494 16399494 C T RFTN1 Missense_Mutation p.S364N 0.08 tolerated(0.23) benign(0.027) TCGA-78-7156-01 3 172482216 172482216 C T ECT2 Missense_Mutation p.S406L 0.04 deleterious(0.01) probably_damaging(0.997) TCGA-78-7156-01 3 179341796 179341796 G A NDUFB5 Missense_Mutation p.D180N 0.04 deleterious(0.01) probably_damaging(0.967) TCGA-78-7156-01 3 185906046 185906046 G T DGKG Silent p.I680I 0.37 TCGA-78-7156-01 3 32995849 32995849 G A CCR4 Missense_Mutation p.R312H 0.33 deleterious(0) probably_damaging(0.935) TCGA-78-7156-01 3 49458927 49458927 G A AMT Nonsense_Mutation p.Q113* 0.40 TCGA-78-7156-01 3 49756557 49756557 G A AMIGO3 Silent p.L114L 0.07 TCGA-78-7156-01 3 51265438 51265438 C G DOCK3 Silent p.L522L 0.35 TCGA-78-7156-01 3 52427015 52427015 C T DNAH1 Missense_Mutation p.S3483L 0.10 benign(0.001) TCGA-78-7156-01 3 57136547 57136547 G A IL17RD Silent p.F313F 0.07 TCGA-78-7156-01 3 9885279 9885279 C G RPUSD3 Missense_Mutation p.Q44H 0.11 tolerated(0.11) benign(0.004) TCGA-78-7156-01 4 100822301 100822301 T A DNAJB14 Missense_Mutation p.M342L 0.37 tolerated(1) benign(0.001) TCGA-78-7156-01 4 103718540 103718540 A T UBE2D3 3'UTR 0.33 TCGA-78-7156-01 4 10445616 10445616 C A ZNF518B Missense_Mutation p.R779S 0.38 deleterious(0) possibly_damaging(0.796) TCGA-78-7156-01 4 107956578 107956578 C A DKK2 Missense_Mutation p.M57I 0.36 tolerated(0.83) benign(0) TCGA-78-7156-01 4 126238974 126238974 G A FAT4 Missense_Mutation p.D470N 0.06 probably_damaging(0.999) TCGA-78-7156-01 4 126370200 126370200 G C FAT4 Missense_Mutation p.E2677Q 0.03 possibly_damaging(0.707) TCGA-78-7156-01 4 138451389 138451389 G A PCDH18 Silent p.C618C 0.43 TCGA-78-7156-01 4 140005289 140005289 G A ELF2 Intron 0.26 TCGA-78-7156-01 4 140005302 140005302 G A ELF2 Intron 0.24 TCGA-78-7156-01 4 141334183 141334183 A G CLGN Missense_Mutation p.I17T 0.45 tolerated(0.09) benign(0.002) TCGA-78-7156-01 4 158282204 158282204 C G GRIA2 Intron 0.37 TCGA-78-7156-01 4 164415889 164415889 C T TMA16 5'UTR 0.11 TCGA-78-7156-01 4 265812 265812 G T ZNF732 Missense_Mutation p.F278L 0.28 deleterious(0) benign(0.009) TCGA-78-7156-01 4 37848985 37848985 A T PGM2 Intron 0.44 TCGA-78-7156-01 4 38774746 38774746 G A TLR10 3'UTR 0.26 TCGA-78-7156-01 4 46388188 46388188 G T GABRA2 Silent p.I30I 0.30 TCGA-78-7156-01 4 52860682 52860682 C T LRRC66 Missense_Mutation p.E836K 0.38 tolerated(0.07) possibly_damaging(0.69) TCGA-78-7156-01 4 71020013 71020013 G A C4orf40 5'UTR 0.09 TCGA-78-7156-01 4 71250271 71250271 C T SMR3B Missense_Mutation p.A15V 0.23 deleterious_low_confidence(0) unknown(0) TCGA-78-7156-01 4 73169681 73169681 C G ADAMTS3 Missense_Mutation p.E793Q 0.41 deleterious(0) probably_damaging(0.998) TCGA-78-7156-01 4 7436310 7436310 G T PSAPL1 Silent p.P99P 0.16 TCGA-78-7156-01 4 88766663 88766663 C A MEPE Missense_Mutation p.R215S 0.35 deleterious(0.05) benign(0.209) TCGA-78-7156-01 5 130980283 130980283 C T FNIP1 3'UTR 0.15 TCGA-78-7156-01 5 137548748 137548748 C A CDC23 Missense_Mutation p.A56S 0.44 tolerated(0.32) benign(0.079) TCGA-78-7156-01 5 139903719 139903719 G C ANKHD1 Missense_Mutation p.K1462N 0.30 benign(0.403) TCGA-78-7156-01 5 140176113 140176113 C T PCDHA2 Missense_Mutation p.P522S 0.41 tolerated_low_confidence(0.12) possibly_damaging(0.601) TCGA-78-7156-01 5 140215665 140215665 T A PCDHA7 Missense_Mutation p.L566Q 0.38 deleterious_low_confidence(0) possibly_damaging(0.892) TCGA-78-7156-01 5 140475158 140475158 C A PCDHB2 Missense_Mutation p.Q262K 0.35 deleterious_low_confidence(0.03) benign(0.158) TCGA-78-7156-01 5 140503412 140503412 C A PCDHB4 Missense_Mutation p.P611H 0.42 deleterious_low_confidence(0) probably_damaging(0.951) TCGA-78-7156-01 5 140589218 140589218 T A PCDHB12 Missense_Mutation p.Y247N 0.07 deleterious_low_confidence(0) probably_damaging(1) TCGA-78-7156-01 5 145439754 145439754 G A SH3RF2 Silent p.V627V 0.12 TCGA-78-7156-01 5 147051274 147051274 G A JAKMIP2 Silent p.D32D 0.49 TCGA-78-7156-01 5 148930440 148930440 C - CSNK1A1 Frame_Shift_Del p.D30Tfs*16 0.33 TCGA-78-7156-01 5 161309626 161309626 G T GABRA1 Missense_Mutation p.V208L 0.38 deleterious(0.03) probably_damaging(0.983) TCGA-78-7156-01 5 175111128 175111128 G T HRH2 Missense_Mutation p.G298W 0.44 deleterious(0) possibly_damaging(0.8) TCGA-78-7156-01 5 24488006 24488006 C A CDH10 Silent p.R711R 0.38 TCGA-78-7156-01 5 251218 251218 G T SDHA Nonsense_Mutation p.G555* 0.36 TCGA-78-7156-01 5 33561210 33561210 C A ADAMTS12 Silent p.A1349A 0.43 TCGA-78-7156-01 5 37303423 37303423 C T NUP155 Missense_Mutation p.E1086K 0.09 deleterious(0) probably_damaging(0.992) TCGA-78-7156-01 5 37516683 37516683 C G WDR70 Nonsense_Mutation p.S303* 0.05 TCGA-78-7156-01 5 74324704 74324704 G C GCNT4 Missense_Mutation p.L387V 0.41 tolerated(0.27) benign(0.032) TCGA-78-7156-01 5 75997028 75997028 C G IQGAP2 Missense_Mutation p.Q1499E 0.04 tolerated(0.17) probably_damaging(0.996) TCGA-78-7156-01 5 7827051 7827051 A G ADCY2 3'UTR 0.41 TCGA-78-7156-01 5 79616268 79616268 T A SPZ1 Missense_Mutation p.D78E 0.04 tolerated(0.15) benign(0.063) TCGA-78-7156-01 6 114378736 114378736 C T HS3ST5 Silent p.L242L 0.04 TCGA-78-7156-01 6 124979633 124979633 C A NKAIN2 Intron 0.63 TCGA-78-7156-01 6 131927641 131927641 G A MED23 Missense_Mutation p.H449Y 0.05 tolerated(1) possibly_damaging(0.824) TCGA-78-7156-01 6 139583713 139583713 C T TXLNB Intron 0.17 TCGA-78-7156-01 6 146720753 146720753 G T GRM1 Missense_Mutation p.V860F 0.70 tolerated(0.2) benign(0.167) TCGA-78-7156-01 6 169628232 169628232 C G THBS2 Missense_Mutation p.D802H 0.10 deleterious(0) probably_damaging(1) TCGA-78-7156-01 6 22287582 22287582 G T PRL 3'UTR 0.37 TCGA-78-7156-01 6 29012475 29012475 A T OR2W1 Missense_Mutation p.C160S 0.37 tolerated(1) probably_damaging(0.932) TCGA-78-7156-01 6 29408052 29408052 G T OR10C1 Missense_Mutation p.G87V 0.35 deleterious(0.02) benign(0.116) TCGA-78-7156-01 6 30619070 30619070 G A C6orf136 Silent p.L378L 0.10 TCGA-78-7156-01 6 3105914 3105914 A G RIPK1 Missense_Mutation p.N402S 0.36 tolerated(0.91) benign(0.009) TCGA-78-7156-01 6 37358601 37358601 C T RNF8 3'UTR 0.04 TCGA-78-7156-01 6 39053920 39053920 C T GLP1R 3'UTR 0.32 TCGA-78-7156-01 6 40359880 40359880 G T LRFN2 Missense_Mutation p.F724L 0.45 tolerated(0.32) probably_damaging(0.97) TCGA-78-7156-01 6 40360011 40360011 C T LRFN2 Missense_Mutation p.G681R 0.37 tolerated(0.09) benign(0.072) TCGA-78-7156-01 6 41126368 41126368 G C TREM2 3'UTR 0.25 TCGA-78-7156-01 6 41243937 41243937 C A TREM1 Missense_Mutation p.A211S 0.39 deleterious(0.02) benign(0.395) TCGA-78-7156-01 6 43155663 43155663 C G CUL9 Silent p.S598S 0.37 TCGA-78-7156-01 6 71242879 71242879 C T FAM135A Silent p.L1264L 0.11 TCGA-78-7156-01 6 88144689 88144689 G A C6ORF165 Missense_Mutation p.R471K 0.11 tolerated(0.76) benign(0.002) TCGA-78-7156-01 7 107822364 107822364 C A NRCAM Missense_Mutation p.G850W 0.37 deleterious(0.02) possibly_damaging(0.864) TCGA-78-7156-01 7 126542710 126542710 G A GRM8 Nonsense_Mutation p.R348* 0.05 TCGA-78-7156-01 7 126544084 126544084 C A GRM8 Missense_Mutation p.Q320H 0.37 tolerated(0.38) benign(0.005) TCGA-78-7156-01 7 127255594 127255594 G C PAX4 5'UTR 0.07 TCGA-78-7156-01 7 138768723 138768723 G C ZC3HAV1 Missense_Mutation p.P167R 0.27 deleterious(0.04) benign(0.317) TCGA-78-7156-01 7 142379051 142379051 C T MTRNR2L6 3'Flank 0.13 TCGA-78-7156-01 7 142567669 142567669 G A EPHB6 Missense_Mutation p.E853K 0.07 deleterious(0) probably_damaging(1) TCGA-78-7156-01 7 143771564 143771564 C A OR2A25 Silent p.L84L 0.07 TCGA-78-7156-01 7 148950880 148950880 C G ZNF212 Missense_Mutation p.P288A 0.33 tolerated(0.08) benign(0.034) TCGA-78-7156-01 7 21744058 21744058 A G DNAH11 Missense_Mutation p.M2101V 0.38 probably_damaging(0.953) TCGA-78-7156-01 7 24902839 24902839 C G OSBPL3 Missense_Mutation p.D284H 0.42 deleterious(0.02) possibly_damaging(0.695) TCGA-78-7156-01 7 25163619 25163619 C T CYCS Silent p.K40K 0.40 TCGA-78-7156-01 7 26236976 26236976 C G HNRNPA2B1 Missense_Mutation p.D87H 0.09 deleterious(0) probably_damaging(0.999) TCGA-78-7156-01 7 2976727 2976727 C T CARD11 Missense_Mutation p.V429I 0.44 tolerated(0.22) benign(0.012) TCGA-78-7156-01 7 33134711 33134711 C A RP9 3'UTR 0.26 TCGA-78-7156-01 7 44151804 44151804 G A AEBP1 Missense_Mutation p.D701N 0.10 tolerated(1) benign(0.04) TCGA-78-7156-01 7 57522864 57522864 C A ZNF716 Silent p.A84A 0.30 TCGA-78-7156-01 7 6797501 6797501 C T RSPH10B2 Nonsense_Mutation p.Q65* 0.21 TCGA-78-7156-01 7 75051137 75051137 C A POM121C Missense_Mutation p.V800F 0.11 deleterious(0.04) possibly_damaging(0.493) TCGA-78-7156-01 8 10465978 10465978 G T RP1L1 Missense_Mutation p.P1877Q 0.41 unknown(0) TCGA-78-7156-01 8 10466795 10466795 G C RP1L1 Missense_Mutation p.Q1605E 0.49 unknown(0) TCGA-78-7156-01 8 113662525 113662525 G T CSMD3 Missense_Mutation p.R1020S 0.38 tolerated(0.4) benign(0.258) TCGA-78-7156-01 8 123963987 123963987 G T ZHX2 Missense_Mutation p.E79D 0.38 deleterious(0) probably_damaging(0.993) TCGA-78-7156-01 8 134072428 134072428 G T SLA Missense_Mutation p.A33E 0.45 deleterious_low_confidence(0.02) benign(0.138) TCGA-78-7156-01 8 17820799 17820799 A T PCM1 Nonsense_Mutation p.K885* 0.10 TCGA-78-7156-01 8 27320615 27320615 G A CHRNA2 Missense_Mutation p.P449S 0.45 tolerated(0.38) benign(0.009) TCGA-78-7156-01 8 27957430 27957430 C T ELP3 Missense_Mutation p.R69C 0.05 deleterious(0) possibly_damaging(0.677) TCGA-78-7156-01 8 35453069 35453069 C G UNC5D Intron 0.30 TCGA-78-7156-01 8 52336233 52336233 G A PXDNL Missense_Mutation p.T566I 0.33 tolerated(0.39) possibly_damaging(0.596) TCGA-78-7156-01 8 87588277 87588277 C G CNGB3 Missense_Mutation p.E729Q 0.40 tolerated(0.38) benign(0.002) TCGA-78-7156-01 8 91095043 91095043 G C CALB1 5'UTR 0.44 TCGA-78-7156-01 8 95164106 95164106 G T CDH17 Missense_Mutation p.L596M 0.30 tolerated(0.15) possibly_damaging(0.897) TCGA-78-7156-01 9 131371197 131371197 C T SPTAN1 Silent p.I1512I 0.04 TCGA-78-7156-01 9 135285781 135285781 C T C9orf171 Silent p.I41I 0.55 TCGA-78-7156-01 9 135285844 135285844 C T C9orf171 Silent p.L62L 0.65 TCGA-78-7156-01 9 138377496 138377496 A T PPP1R26 Silent p.T380T 0.34 TCGA-78-7156-01 9 138657014 138657014 C A KCNT1 Missense_Mutation p.N391K 0.32 deleterious(0.03) benign(0.38) TCGA-78-7156-01 9 141015235 141015235 G C CACNA1B Missense_Mutation p.D2131H 0.62 deleterious(0.01) probably_damaging(1) TCGA-78-7156-01 9 27556654 27556654 C T C9orf72 Missense_Mutation p.M332I 0.62 deleterious(0.03) benign(0.216) TCGA-78-7156-01 9 32634692 32634692 C T TAF1L Missense_Mutation p.E296K 0.08 tolerated(0.47) benign(0.004) TCGA-78-7156-01 9 33953410 33953410 G A UBAP2 Missense_Mutation p.S310F 0.14 deleterious(0.03) probably_damaging(0.99) TCGA-78-7156-01 9 72755089 72755089 C A MAMDC2 Missense_Mutation p.S341R 0.38 deleterious(0.03) possibly_damaging(0.513) TCGA-78-7156-01 9 79321336 79321336 C T PRUNE2 Missense_Mutation p.E1952K 0.05 tolerated(0.21) benign(0.13) TCGA-78-7156-01 9 96320268 96320268 C T FAM120A Nonsense_Mutation p.Q882* 0.12 TCGA-78-7156-01 X 118370318 118370318 C A PGRMC1 5'UTR 0.80 TCGA-78-7156-01 X 122830595 122830595 G A THOC2 Missense_Mutation p.S148L 0.13 tolerated(0.11) benign(0.002) TCGA-78-7156-01 X 123197866 123197866 A - STAG2 Frame_Shift_Del p.K664Nfs*28 0.26 TCGA-78-7156-01 X 123224615 123224615 G A STAG2 Splice_Site p.X1156_splice 0.45 TCGA-78-7156-01 X 123227890 123227890 G T STAG2 Nonsense_Mutation p.E1201* 0.13 TCGA-78-7156-01 X 128650465 128650465 G A SMARCA1 Nonsense_Mutation p.R91* 0.82 TCGA-78-7156-01 X 135405197 135405197 C A GPR112 Missense_Mutation p.R111S 0.77 tolerated(0.79) benign(0.006) TCGA-78-7156-01 X 142967263 142967263 C T UBE2NL Missense_Mutation p.P21S 0.07 tolerated(0.07) benign(0.083) TCGA-78-7156-01 X 144903954 144903954 G A SLITRK2 Missense_Mutation p.G4D 0.72 tolerated_low_confidence(0.58) benign(0.1) TCGA-78-7156-01 X 149905079 149905079 G A MTMR1 Missense_Mutation p.G357R 0.69 deleterious(0) probably_damaging(1) TCGA-78-7156-01 X 37028632 37028632 G T FAM47C Nonsense_Mutation p.E717* 0.77 TCGA-78-7156-01 X 38144706 38144706 C T RPGR 3'UTR 0.11 TCGA-78-7156-01 X 48339705 48339706 AG T FTSJ1 Frame_Shift_Del p.K148Ifs*16 0.43 TCGA-78-7156-01 X 70346925 70346925 G C MED12 Missense_Mutation p.R931P 0.69 probably_damaging(0.996) TCGA-78-7156-01 X 83128707 83128707 G C CYLC1 Missense_Mutation p.E331Q 0.82 deleterious(0.02) unknown(0) TCGA-78-7156-01 Y 15508854 15508854 T A UTY Splice_Site p.X186_splice 0.40 TCGA-78-7156-01 Y 6116937 6116937 C A TSPY2 3'UTR 0.73 TCGA-78-7158-01 10 105792028 105792028 G T COL17A1 Silent p.R1487R 0.44 TCGA-78-7158-01 10 107016584 107016584 G C SORCS3 Missense_Mutation p.L1115F 0.43 deleterious(0.01) probably_damaging(0.994) TCGA-78-7158-01 10 1130413 1130413 G T WDR37 Missense_Mutation p.R156L 0.39 deleterious(0.01) probably_damaging(0.982) TCGA-78-7158-01 10 119305203 119305203 G A EMX2 Missense_Mutation p.R156Q 0.12 deleterious(0.04) probably_damaging(1) TCGA-78-7158-01 10 121285608 121285608 C G RGS10 Missense_Mutation p.S64T 0.30 deleterious(0) possibly_damaging(0.658) TCGA-78-7158-01 10 15760819 15760819 G T ITGA8 Missense_Mutation p.P97T 0.38 deleterious(0) possibly_damaging(0.703) TCGA-78-7158-01 10 20436785 20436785 A G PLXDC2 Missense_Mutation p.Q246R 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-78-7158-01 10 20508007 20508007 G A PLXDC2 Missense_Mutation p.A430T 0.28 tolerated(0.49) probably_damaging(0.957) TCGA-78-7158-01 10 35930182 35930182 T A FZD8 Missense_Mutation p.H59L 0.39 deleterious(0) unknown(0) TCGA-78-7158-01 10 50530874 50530874 G T C10orf71 Missense_Mutation p.W95L 0.45 deleterious(0) probably_damaging(0.999) TCGA-78-7158-01 10 60546724 60546724 A G BICC1 Silent p.E143E 0.19 TCGA-78-7158-01 10 61043179 61043179 T A FAM13C Missense_Mutation p.K179M 0.43 deleterious(0) probably_damaging(1) TCGA-78-7158-01 11 102815025 102815025 G T MMP13 Silent p.V462V 0.39 TCGA-78-7158-01 11 103907842 103907842 G A DDI1 Missense_Mutation p.G98S 0.44 tolerated(1) benign(0.003) TCGA-78-7158-01 11 117253620 117253620 G T CEP164 Missense_Mutation p.K562N 0.48 tolerated(0.09) possibly_damaging(0.471) TCGA-78-7158-01 11 117387188 117387188 C A DSCAML1 Missense_Mutation p.V653F 0.32 deleterious(0.04) probably_damaging(0.971) TCGA-78-7158-01 11 118851416 118851416 C A FOXR1 Silent p.I276I 0.50 TCGA-78-7158-01 11 124543615 124543615 A T SIAE 5'UTR 0.17 TCGA-78-7158-01 11 124564341 124564341 G A SPA17 Silent p.%3D 0.16 TCGA-78-7158-01 11 15260597 15260597 C G INSC Missense_Mutation p.A504G 0.37 deleterious(0) probably_damaging(0.991) TCGA-78-7158-01 11 17741225 17741225 C T MYOD1 5'UTR 0.50 TCGA-78-7158-01 11 22399051 22399051 G T SLC17A6 Missense_Mutation p.W505L 0.33 deleterious(0) probably_damaging(1) TCGA-78-7158-01 11 22747844 22747844 C - GAS2 Frame_Shift_Del p.P92Rfs*2 0.31 TCGA-78-7158-01 11 44254029 44254029 G A EXT2 Missense_Mutation p.A630T 0.38 deleterious(0) probably_damaging(0.996) TCGA-78-7158-01 11 4825267 4825267 G T OR52R1 Missense_Mutation p.S115Y 0.48 deleterious(0) probably_damaging(0.932) TCGA-78-7158-01 11 5730492 5730492 G T TRIM22 Missense_Mutation p.V371L 0.41 tolerated(0.08) probably_damaging(0.967) TCGA-78-7158-01 11 5905530 5905530 C A OR52E4 Missense_Mutation p.S3Y 0.39 tolerated(0.06) benign(0.197) TCGA-78-7158-01 11 60296836 60296836 A G MS4A13 Splice_Site p.X103_splice 0.31 TCGA-78-7158-01 11 61495745 61495745 G A DAGLA Missense_Mutation p.A253T 0.34 tolerated(0.14) benign(0.035) TCGA-78-7158-01 11 78440614 78440614 G A TENM4 Silent p.Y1071Y 0.44 TCGA-78-7158-01 12 106772119 106772119 G A POLR3B Missense_Mutation p.V191M 0.07 deleterious(0) probably_damaging(0.966) TCGA-78-7158-01 12 126138920 126138920 G C TMEM132B Missense_Mutation p.E967D 0.46 deleterious(0.03) benign(0.054) TCGA-78-7158-01 12 29648354 29648354 C A OVCH1 Missense_Mutation p.E106D 0.37 tolerated(0.14) benign(0.169) TCGA-78-7158-01 12 31144882 31144882 C T TSPAN11 3'UTR 0.42 TCGA-78-7158-01 12 66308660 66308660 G T HMGA2 Intron 0.35 TCGA-78-7158-01 12 85677598 85677598 G T ALX1 Missense_Mutation p.V159L 0.39 deleterious(0) possibly_damaging(0.705) TCGA-78-7158-01 13 103292686 103292686 A T TPP2 Silent p.R660R 0.32 TCGA-78-7158-01 13 112722025 112722025 C A SOX1 Missense_Mutation p.A18D 0.50 tolerated(0.18) benign(0.017) TCGA-78-7158-01 13 41525519 41525519 C T ELF1 Missense_Mutation p.E103K 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-78-7158-01 13 49795193 49795193 G A MLNR Silent p.A240A 0.33 TCGA-78-7158-01 13 73345120 73345120 T C DIS3 Silent p.A559A 0.40 TCGA-78-7158-01 14 102469195 102469195 G C DYNC1H1 Silent p.L1592L 0.10 TCGA-78-7158-01 14 21461276 21461276 G A METTL17 Splice_Site p.X177_splice 0.42 TCGA-78-7158-01 14 23886369 23886369 G T MYH7 Missense_Mutation p.N1504K 0.41 deleterious(0.03) probably_damaging(0.997) TCGA-78-7158-01 14 45501514 45501514 A G FAM179B Silent p.L1249L 0.41 TCGA-78-7158-01 14 63784522 63784522 G A GPHB5 RNA 0.40 TCGA-78-7158-01 14 94066930 94066930 C A UNC79 Missense_Mutation p.L953I 0.25 deleterious(0.05) possibly_damaging(0.654) TCGA-78-7158-01 15 52065968 52065968 C T TMOD2 Missense_Mutation p.L115F 0.44 tolerated(0.06) probably_damaging(0.993) TCGA-78-7158-01 15 53907848 53907848 C A WDR72 Missense_Mutation p.G852V 0.38 tolerated(0.19) benign(0.172) TCGA-78-7158-01 15 53907849 53907849 C A WDR72 Nonsense_Mutation p.G852* 0.38 TCGA-78-7158-01 15 63421874 63421874 C A LACTB Intron 0.35 TCGA-78-7158-01 15 63481946 63481946 C T RAB8B Silent p.I41I 0.19 TCGA-78-7158-01 15 74328242 74328242 G A PML Intron 0.12 TCGA-78-7158-01 15 88576139 88576139 C T NTRK3 Missense_Mutation p.E512K 0.17 deleterious(0) probably_damaging(0.983) TCGA-78-7158-01 15 88726685 88726685 G T NTRK3 Missense_Mutation p.P120H 0.45 tolerated(0.11) benign(0.021) TCGA-78-7158-01 16 11154765 11154765 C T CLEC16A Missense_Mutation p.R668W 0.10 deleterious(0) probably_damaging(0.993) TCGA-78-7158-01 16 17353202 17353202 G C XYLT1 Missense_Mutation p.P186A 0.40 tolerated_low_confidence(0.54) benign(0.004) TCGA-78-7158-01 16 22161194 22161194 T C VWA3A Missense_Mutation p.M1024T 0.41 tolerated(0.1) benign(0.014) TCGA-78-7158-01 16 24268207 24268207 T A CACNG3 Silent p.S44S 0.36 TCGA-78-7158-01 16 31485687 31485687 C G TGFB1I1 Missense_Mutation p.P144A 0.15 tolerated(0.08) benign(0.018) TCGA-78-7158-01 16 335343 335343 T A PDIA2 Missense_Mutation p.L276H 0.54 tolerated(0.25) benign(0.209) TCGA-78-7158-01 16 3860676 3860676 C A CREBBP Missense_Mutation p.Q301H 0.45 probably_damaging(0.94) TCGA-78-7158-01 16 49670203 49670203 C A ZNF423 Missense_Mutation p.G954C 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-78-7158-01 16 50813827 50813827 C T CYLD Missense_Mutation p.P464S 0.12 tolerated(0.84) benign(0) TCGA-78-7158-01 17 10415802 10415802 C G MYH1 Missense_Mutation p.G357A 0.46 tolerated(0.08) probably_damaging(1) TCGA-78-7158-01 17 2595924 2595924 C A CLUH Missense_Mutation p.A1088S 0.50 deleterious(0.02) possibly_damaging(0.893) TCGA-78-7158-01 17 35930960 35930960 C T SYNRG Missense_Mutation p.D375N 0.10 deleterious(0.03) probably_damaging(0.996) TCGA-78-7158-01 17 39382920 39382920 G T KRTAP9-2 Missense_Mutation p.C5F 0.24 deleterious(0.01) unknown(0) TCGA-78-7158-01 17 39405986 39405986 G T KRTAP9-4 Missense_Mutation p.C5F 0.08 deleterious(0) unknown(0) TCGA-78-7158-01 17 45901816 45901816 T C MRPL10 Missense_Mutation p.I191V 0.59 tolerated(0.5) benign(0.005) TCGA-78-7158-01 17 46627677 46627677 C A HOXB3 3'UTR 0.39 TCGA-78-7158-01 17 49731063 49731063 G A CA10 Missense_Mutation p.T167M 0.37 tolerated(0.05) possibly_damaging(0.654) TCGA-78-7158-01 17 59968907 59968907 C A INTS2 Missense_Mutation p.Q622H 0.38 deleterious(0.03) probably_damaging(0.929) TCGA-78-7158-01 17 6381406 6381406 G A PITPNM3 Silent p.I263I 0.32 TCGA-78-7158-01 17 68128776 68128776 G T KCNJ16 Missense_Mutation p.R183L 0.34 tolerated(1) probably_damaging(0.991) TCGA-78-7158-01 17 8076826 8076826 C T TMEM107 3'Flank 0.32 TCGA-78-7158-01 17 8140817 8140817 T A CTC1 Missense_Mutation p.Q223L 0.50 deleterious(0.03) benign(0.153) TCGA-78-7158-01 18 14851935 14851935 A T ANKRD30B Missense_Mutation p.Q1212L 0.56 deleterious(0) possibly_damaging(0.888) TCGA-78-7158-01 18 28611062 28611062 C T DSC3 Silent p.G77G 0.25 TCGA-78-7158-01 18 57122083 57122083 C A CCBE1 Missense_Mutation p.K218N 0.45 deleterious(0.01) possibly_damaging(0.735) TCGA-78-7158-01 18 6898484 6898484 G T ARHGAP28 Intron 0.37 TCGA-78-7158-01 18 77895677 77895681 TGGGG - ADNP2 Frame_Shift_Del p.L794Qfs*9 0.26 TCGA-78-7158-01 19 10107298 10107298 A G COL5A3 Missense_Mutation p.M444T 0.35 unknown(0) TCGA-78-7158-01 19 10224379 10224379 C T PPAN-P2RY11 Silent p.F450F 0.50 TCGA-78-7158-01 19 10600474 10600474 T C KEAP1 Missense_Mutation p.I461V 0.44 tolerated(0.22) possibly_damaging(0.586) TCGA-78-7158-01 19 12061049 12061049 G A ZNF700 Missense_Mutation p.C737Y 0.35 tolerated(0.05) benign(0.001) TCGA-78-7158-01 19 12383799 12383799 T C ZNF44 Missense_Mutation p.K472R 0.47 deleterious(0.03) probably_damaging(0.998) TCGA-78-7158-01 19 19356128 19356128 G A NCAN Missense_Mutation p.E1167K 0.49 deleterious(0.02) probably_damaging(0.995) TCGA-78-7158-01 19 22271945 22271945 G T ZNF257 Missense_Mutation p.G465C 0.28 deleterious(0) probably_damaging(0.996) TCGA-78-7158-01 19 22272044 22272044 C T ZNF257 Missense_Mutation p.R498W 0.25 tolerated(0.48) benign(0.005) TCGA-78-7158-01 19 22952782 22952782 C G ZNF99 Intron 0.27 TCGA-78-7158-01 19 38572144 38572144 G T SIPA1L3 5'UTR 0.50 TCGA-78-7158-01 19 38817582 38817582 G T KCNK6 Missense_Mutation p.E224D 0.42 deleterious(0) probably_damaging(0.974) TCGA-78-7158-01 19 40748459 40748459 G A AKT2 Silent p.S141S 0.44 TCGA-78-7158-01 19 40884020 40884020 T G PLD3 Silent p.P471P 0.46 TCGA-78-7158-01 19 52825717 52825717 G T ZNF480 Missense_Mutation p.G405V 0.21 deleterious(0.01) probably_damaging(0.977) TCGA-78-7158-01 19 53989948 53989948 C G ZNF813 Missense_Mutation p.D26E 0.29 deleterious(0.04) possibly_damaging(0.755) TCGA-78-7158-01 19 54299200 54299200 T A NLRP12 Missense_Mutation p.Y1004F 0.50 tolerated(0.39) unknown(0) TCGA-78-7158-01 19 56373374 56373374 T G NLRP4 Missense_Mutation p.F679V 0.35 deleterious(0.02) benign(0.05) TCGA-78-7158-01 19 6441962 6441962 T C SLC25A23 3'UTR 0.30 TCGA-78-7158-01 19 6696469 6696469 C A C3 Silent p.V957V 0.43 TCGA-78-7158-01 19 8196582 8196582 C A FBN3 Missense_Mutation p.V616L 0.34 tolerated(0.09) benign(0.103) TCGA-78-7158-01 19 9921644 9921644 C A FBXL12 Silent p.L303L 0.50 TCGA-78-7158-01 1 109441561 109441561 C T GPSM2 Missense_Mutation p.L248F 0.42 deleterious(0.02) probably_damaging(1) TCGA-78-7158-01 1 11300433 11300433 C A MTOR Silent p.T571T 0.33 TCGA-78-7158-01 1 11333865 11333865 G T UBIAD1 Missense_Mutation p.A93S 0.43 tolerated(1) benign(0.002) TCGA-78-7158-01 1 152079960 152079960 C - TCHH Frame_Shift_Del p.L1912Ffs*34 0.20 TCGA-78-7158-01 1 152383274 152383274 C T CRNN Missense_Mutation p.G95E 0.05 deleterious(0.03) benign(0.103) TCGA-78-7158-01 1 152732360 152732360 C A KPRP Missense_Mutation p.A99E 0.23 deleterious(0) benign(0.236) TCGA-78-7158-01 1 153974346 153974346 C A NUP210L Missense_Mutation p.K1682N 0.48 tolerated(0.12) benign(0.411) TCGA-78-7158-01 1 154192836 154192836 C T C1orf43 Silent p.V16V 0.19 TCGA-78-7158-01 1 154233427 154233427 G T UBAP2L Missense_Mutation p.A880S 0.20 tolerated(0.17) probably_damaging(0.985) TCGA-78-7158-01 1 158516940 158516940 C A OR6Y1 Missense_Mutation p.G319V 0.20 tolerated(0.42) benign(0.042) TCGA-78-7158-01 1 175086284 175086284 G T TNN Missense_Mutation p.V777L 0.18 tolerated(0.21) benign(0.281) TCGA-78-7158-01 1 175292368 175292368 C T TNR 3'UTR 0.50 TCGA-78-7158-01 1 180000550 180000550 A C CEP350 Missense_Mutation p.S1216R 0.15 benign(0.342) TCGA-78-7158-01 1 181721322 181721322 G T CACNA1E Missense_Mutation p.V1259L 0.21 deleterious(0) possibly_damaging(0.685) TCGA-78-7158-01 1 183212376 183212376 G T LAMC2 Missense_Mutation p.M1141I 0.48 tolerated(0.15) benign(0.001) TCGA-78-7158-01 1 18703331 18703331 G T IGSF21 Missense_Mutation p.R380L 0.55 deleterious(0.01) probably_damaging(0.999) TCGA-78-7158-01 1 19180775 19180775 G T TAS1R2 Missense_Mutation p.H397N 0.38 deleterious(0.02) probably_damaging(0.95) TCGA-78-7158-01 1 213414361 213414361 A G RPS6KC1 Silent p.T514T 0.45 TCGA-78-7158-01 1 215987179 215987179 G T USH2A Missense_Mutation p.P3213Q 0.29 possibly_damaging(0.752) TCGA-78-7158-01 1 216373289 216373289 G T USH2A Missense_Mutation p.S1164Y 0.67 benign(0.156) TCGA-78-7158-01 1 223178606 223178606 G T DISP1 Missense_Mutation p.Q1289H 0.26 tolerated_low_confidence(0.06) possibly_damaging(0.77) TCGA-78-7158-01 1 22839540 22839540 G A ZBTB40 Missense_Mutation p.R862H 0.19 deleterious(0) benign(0.149) TCGA-78-7158-01 1 238048735 238048735 G T ZP4 Missense_Mutation p.S372R 0.23 tolerated(0.05) benign(0.334) TCGA-78-7158-01 1 242013757 242013757 C G EXO1 Missense_Mutation p.I10M 0.05 deleterious(0.04) possibly_damaging(0.883) TCGA-78-7158-01 1 247902441 247902441 C A OR14K1 Missense_Mutation p.F175L 0.21 deleterious(0.04) possibly_damaging(0.66) TCGA-78-7158-01 1 248685673 248685673 G T OR2G6 Silent p.S242S 0.22 TCGA-78-7158-01 1 41232320 41232320 C G NFYC Nonsense_Mutation p.S258* 0.20 TCGA-78-7158-01 1 44466566 44466566 C A SLC6A9 Intron 0.53 TCGA-78-7158-01 1 47489498 47489498 C G CYP4X1 Missense_Mutation p.F3L 0.08 tolerated(0.43) benign(0.009) TCGA-78-7158-01 1 75596369 75596369 C A LHX8 5'UTR 0.41 TCGA-78-7158-01 1 76347047 76347047 C - MSH4 Frame_Shift_Del p.S633Lfs*12 0.29 TCGA-78-7158-01 20 2774727 2774727 C - CPXM1 3'UTR 0.29 TCGA-78-7158-01 20 3175885 3175885 C T DDRGK1 Missense_Mutation p.E209K 0.14 tolerated(0.06) possibly_damaging(0.73) TCGA-78-7158-01 20 3175889 3175889 C T DDRGK1 Missense_Mutation p.M207I 0.14 tolerated(0.31) possibly_damaging(0.484) TCGA-78-7158-01 20 3175940 3175940 C T DDRGK1 Silent p.L190L 0.13 TCGA-78-7158-01 20 3210254 3210254 G C SLC4A11 Nonsense_Mutation p.S596* 0.37 TCGA-78-7158-01 20 36611800 36611800 C A TTI1 3'UTR 0.33 TCGA-78-7158-01 20 36841670 36841670 G T KIAA1755 Missense_Mutation p.P1126Q 0.26 tolerated(0.1) benign(0.025) TCGA-78-7158-01 20 42694462 42694462 G T TOX2 Silent p.T357T 0.32 TCGA-78-7158-01 20 55092258 55092258 G T RTFDC1 Splice_Site p.X248_splice 0.36 TCGA-78-7158-01 20 57016113 57016113 C T VAPB Silent p.L183L 0.21 TCGA-78-7158-01 20 58348444 58348444 C A PHACTR3 Missense_Mutation p.L288I 0.51 deleterious(0.02) probably_damaging(0.996) TCGA-78-7158-01 20 60581656 60581656 G - TAF4 Frame_Shift_Del p.T712Pfs*2 0.25 TCGA-78-7158-01 20 62221554 62221554 G A GMEB2 Missense_Mutation p.S494L 0.19 deleterious(0.04) benign(0.022) TCGA-78-7158-01 20 8689341 8689341 T A PLCB1 Missense_Mutation p.C398S 0.29 tolerated(1) benign(0.029) TCGA-78-7158-01 21 11039287 11039287 G T BAGE2 RNA 0.05 TCGA-78-7158-01 21 32508251 32508251 C A TIAM1 Missense_Mutation p.V1295F 0.42 deleterious(0) probably_damaging(0.915) TCGA-78-7158-01 21 32638875 32638875 G A TIAM1 Silent p.D138D 0.30 TCGA-78-7158-01 22 20755021 20755021 G C ZNF74 Missense_Mutation p.E74Q 0.14 deleterious(0) probably_damaging(0.998) TCGA-78-7158-01 22 24122785 24122785 G T MMP11 Missense_Mutation p.D167Y 0.23 deleterious(0.03) benign(0.026) TCGA-78-7158-01 22 30403132 30403141 GCTGTGGACA - MTMR3 Frame_Shift_Del p.C235Qfs*20 0.11 TCGA-78-7158-01 22 37209698 37209698 C A PVALB Missense_Mutation p.G99V 0.38 deleterious(0) probably_damaging(0.999) TCGA-78-7158-01 22 37966365 37966365 C A LGALS2 Nonsense_Mutation p.E102* 0.11 TCGA-78-7158-01 22 41231574 41231575 - C ST13 Frame_Shift_Ins p.K190Efs*15 0.30 TCGA-78-7158-01 22 42608404 42608404 C A TCF20 Missense_Mutation p.A970S 0.37 possibly_damaging(0.827) TCGA-78-7158-01 2 113513884 113513884 T G CKAP2L Missense_Mutation p.Q355P 0.08 tolerated(0.1) benign(0.012) TCGA-78-7158-01 2 119727904 119727904 T A MARCO Silent p.T138T 0.46 TCGA-78-7158-01 2 152512848 152512870 TTTTTCTTGTACTCCCGATCAGA - NEB Frame_Shift_Del p.S2098Lfs*2 0.49 TCGA-78-7158-01 2 161029180 161029180 G C ITGB6 Missense_Mutation p.S274C 0.09 deleterious(0.04) probably_damaging(1) TCGA-78-7158-01 2 165947810 165947810 G T SCN3A Missense_Mutation p.T1618N 0.43 deleterious(0) probably_damaging(0.999) TCGA-78-7158-01 2 178985109 178985109 G A RBM45 Missense_Mutation p.E216K 0.18 tolerated(0.28) benign(0.098) TCGA-78-7158-01 2 179414882 179414882 G C TTN Missense_Mutation p.F30561L 0.14 TCGA-78-7158-01 2 179580343 179580343 A T TTN Missense_Mutation p.F8600I 0.44 TCGA-78-7158-01 2 211018910 211018910 T A KANSL1L Missense_Mutation p.I133F 0.43 deleterious(0.04) possibly_damaging(0.877) TCGA-78-7158-01 2 211441117 211441117 C A CPS1 Missense_Mutation p.T101K 0.39 deleterious(0) probably_damaging(0.999) TCGA-78-7158-01 2 234372909 234372909 G T DGKD Missense_Mutation p.A1096S 0.46 tolerated(0.35) benign(0.008) TCGA-78-7158-01 2 241679756 241679756 G A KIF1A Missense_Mutation p.R1259C 0.11 deleterious(0.01) possibly_damaging(0.828) TCGA-78-7158-01 2 42909573 42909573 C T MTA3 Silent p.S245S 0.33 TCGA-78-7158-01 2 70677955 70677955 C T TGFA 3'UTR 0.23 TCGA-78-7158-01 2 73316265 73316265 C T RAB11FIP5 Missense_Mutation p.D204N 0.14 deleterious(0) benign(0.388) TCGA-78-7158-01 2 73316441 73316441 C T RAB11FIP5 Nonsense_Mutation p.W145* 0.15 TCGA-78-7158-01 2 79253884 79253884 C G REG3G Missense_Mutation p.P41R 0.67 deleterious(0) probably_damaging(0.988) TCGA-78-7158-01 2 79253909 79253909 C A REG3G Silent p.S49S 0.31 TCGA-78-7158-01 2 86292631 86292631 C G POLR1A Intron 0.22 TCGA-78-7158-01 3 113084966 113084966 C T WDR52 Missense_Mutation p.D879N 0.12 deleterious(0) probably_damaging(1) TCGA-78-7158-01 3 147114028 147114028 C - ZIC4 Frame_Shift_Del p.G150Afs*2 0.39 TCGA-78-7158-01 3 172538050 172538050 A G ECT2 3'UTR 0.43 TCGA-78-7158-01 3 186954192 186954192 C A MASP1 Silent p.A489A 0.44 TCGA-78-7158-01 3 192125822 192125822 C T FGF12 Missense_Mutation p.R64Q 0.11 deleterious(0.01) benign(0.374) TCGA-78-7158-01 3 193132463 193132463 G C ATP13A4 Silent p.L973L 0.43 TCGA-78-7158-01 3 2861215 2861215 G T CNTN4 Missense_Mutation p.R135L 0.38 deleterious(0.01) benign(0.267) TCGA-78-7158-01 3 36779795 36779795 G T DCLK3 Missense_Mutation p.A119E 0.42 tolerated(0.26) benign(0.003) TCGA-78-7158-01 3 41266113 41266113 C T CTNNB1 Missense_Mutation p.S37F 0.42 deleterious(0) probably_damaging(0.962) TCGA-78-7158-01 3 432804 432804 C T CHL1 Missense_Mutation p.P918L 0.42 deleterious(0) probably_damaging(1) TCGA-78-7158-01 3 44700297 44700297 C T ZNF35 Nonsense_Mutation p.Q148* 0.12 TCGA-78-7158-01 3 44775979 44775979 A G ZNF501 Silent p.S22S 0.53 TCGA-78-7158-01 3 46717892 46717892 C A ALS2CL Missense_Mutation p.A677S 0.37 deleterious(0.05) possibly_damaging(0.607) TCGA-78-7158-01 3 48474184 48474184 C T CCDC51 Silent p.P290P 0.27 TCGA-78-7158-01 3 49043295 49043295 G A P4HTM Missense_Mutation p.E448K 0.08 deleterious(0.01) probably_damaging(0.983) TCGA-78-7158-01 3 5244822 5244822 A G EDEM1 Missense_Mutation p.T344A 0.41 deleterious(0.05) probably_damaging(0.976) TCGA-78-7158-01 3 62358282 62358282 G T FEZF2 Missense_Mutation p.L88M 0.38 tolerated(0.08) possibly_damaging(0.86) TCGA-78-7158-01 4 100048406 100048406 T C ADH4 Silent p.P311P 0.42 TCGA-78-7158-01 4 100822192 100822192 C T DNAJB14 Missense_Mutation p.G378E 0.07 deleterious(0) probably_damaging(0.999) TCGA-78-7158-01 4 110394165 110394165 G A SEC24B Missense_Mutation p.D295N 0.11 tolerated_low_confidence(0.06) benign(0.103) TCGA-78-7158-01 4 154556719 154556719 C G KIAA0922 Missense_Mutation p.S1518C 0.24 deleterious(0) possibly_damaging(0.823) TCGA-78-7158-01 4 166999170 166999170 C T TLL1 Silent p.H810H 0.41 TCGA-78-7158-01 4 20487859 20487859 G T SLIT2 Silent p.V192V 0.32 TCGA-78-7158-01 4 3319586 3319586 C T RGS12 Silent p.G563G 0.26 TCGA-78-7158-01 4 46994843 46994843 A T GABRA4 Splice_Site p.X69_splice 0.31 TCGA-78-7158-01 4 65180437 65180437 G T TECRL Silent p.L160L 0.36 TCGA-78-7158-01 4 9909889 9909889 C A SLC2A9 Silent p.G361G 0.32 TCGA-78-7158-01 5 131008179 131008179 G A FNIP1 Missense_Mutation p.S653F 0.07 deleterious_low_confidence(0.03) benign(0.103) TCGA-78-7158-01 5 131543483 131543483 C G P4HA2 Missense_Mutation p.W333S 0.37 tolerated(0.06) probably_damaging(0.999) TCGA-78-7158-01 5 140188067 140188067 C A PCDHA4 Nonsense_Mutation p.S432* 0.47 TCGA-78-7158-01 5 140553265 140553265 C T PCDHB7 Silent p.Y283Y 0.49 TCGA-78-7158-01 5 141335212 141335212 C G PCDH12 Missense_Mutation p.L735F 0.32 tolerated(0.06) possibly_damaging(0.669) TCGA-78-7158-01 5 146780289 146780289 T A DPYSL3 Missense_Mutation p.E473V 0.50 deleterious(0.01) possibly_damaging(0.822) TCGA-78-7158-01 5 150422465 150422465 C T TNIP1 Missense_Mutation p.E332K 0.05 deleterious(0) probably_damaging(0.94) TCGA-78-7158-01 5 156946889 156946889 C A ADAM19 Missense_Mutation p.W186C 0.45 tolerated(0.18) possibly_damaging(0.819) TCGA-78-7158-01 5 21783516 21783516 G T CDH12 Missense_Mutation p.D448E 0.29 deleterious(0) probably_damaging(0.997) TCGA-78-7158-01 5 33577084 33577084 G T ADAMTS12 Missense_Mutation p.P1016Q 0.38 tolerated(0.65) benign(0.002) TCGA-78-7158-01 5 5457453 5457453 G T KIAA0947 Missense_Mutation p.A234S 0.48 tolerated(0.08) possibly_damaging(0.74) TCGA-78-7158-01 5 6605502 6605502 G A NSUN2 Missense_Mutation p.P541S 0.09 tolerated(0.38) benign(0.009) TCGA-78-7158-01 5 70785481 70785481 G C BDP1 Silent p.A488A 0.35 TCGA-78-7158-01 6 105609469 105609469 G A POPDC3 Nonsense_Mutation p.R106* 0.14 TCGA-78-7158-01 6 21108643 21108643 G C CDKAL1 Missense_Mutation p.R416S 0.20 deleterious(0) possibly_damaging(0.468) TCGA-78-7158-01 6 25600552 25600552 A T LRRC16A Missense_Mutation p.T1044S 0.32 tolerated(0.52) benign(0) TCGA-78-7158-01 6 31805083 31805083 C G C6orf48 5'UTR 0.11 TCGA-78-7158-01 6 32036264 32036264 G A TNXB Silent p.T2041T 0.54 TCGA-78-7158-01 6 43270461 43270461 G T SLC22A7 Missense_Mutation p.A449S 0.32 deleterious(0.01) possibly_damaging(0.856) TCGA-78-7158-01 6 44272162 44272162 C A AARS2 Missense_Mutation p.D621Y 0.41 deleterious(0) probably_damaging(0.998) TCGA-78-7158-01 6 49426796 49426796 C A MUT Missense_Mutation p.K128N 0.49 deleterious_low_confidence(0) possibly_damaging(0.733) TCGA-78-7158-01 6 5613521 5613521 G C FARS2 Missense_Mutation p.K395N 0.14 tolerated(0.09) benign(0.007) TCGA-78-7158-01 6 7845379 7845379 A G BMP6 Missense_Mutation p.Y224C 0.31 tolerated(0.15) benign(0.038) TCGA-78-7158-01 7 113519846 113519846 C A PPP1R3A Missense_Mutation p.S434I 0.46 tolerated(0.29) benign(0.019) TCGA-78-7158-01 7 128413907 128413907 C G OPN1SW Missense_Mutation p.Q241H 0.49 deleterious(0.05) benign(0.232) TCGA-78-7158-01 7 131113898 131113898 A T MKLN1 Missense_Mutation p.E318D 0.38 tolerated(0.06) possibly_damaging(0.653) TCGA-78-7158-01 7 141619371 141619371 T G OR9A4 Silent p.S232S 0.35 TCGA-78-7158-01 7 142499083 142499083 C G TRBC2 Missense_Mutation p.I120M 0.12 tolerated(0.13) benign(0.265) TCGA-78-7158-01 7 143029565 143029565 C A CLCN1 Missense_Mutation p.P407Q 0.46 deleterious(0) probably_damaging(1) TCGA-78-7158-01 7 151127085 151127085 C T CRYGN 3'UTR 0.49 TCGA-78-7158-01 7 35050942 35050942 C A DPY19L1 Nonsense_Mutation p.G151* 0.34 TCGA-78-7158-01 7 48443409 48443409 G T ABCA13 Missense_Mutation p.E4001D 0.37 probably_damaging(0.999) TCGA-78-7158-01 7 55266427 55266427 T A EGFR Missense_Mutation p.L907M 0.44 deleterious(0.02) probably_damaging(1) TCGA-78-7158-01 7 6018269 6018269 T C PMS2 Missense_Mutation p.I745V 0.33 tolerated(0.13) probably_damaging(0.914) TCGA-78-7158-01 7 64643383 64643383 A T INTS4L1 RNA 0.29 TCGA-78-7158-01 7 71743686 71743686 C T CALN1 Missense_Mutation p.V77M 0.21 tolerated(0.11) possibly_damaging(0.578) TCGA-78-7158-01 7 75141678 75141678 G C Y_RNA 3'Flank 0.27 TCGA-78-7158-01 7 80433566 80433566 T C SEMA3C Splice_Site p.X220_splice 0.38 TCGA-78-7158-01 7 87199522 87199522 C A ABCB1 Missense_Mutation p.G102W 0.23 deleterious(0.03) possibly_damaging(0.537) TCGA-78-7158-01 7 89790150 89790150 A G STEAP1 Missense_Mutation p.K39R 0.33 tolerated_low_confidence(0.08) benign(0.099) TCGA-78-7158-01 8 113694670 113694671 CC - CSMD3 Splice_Site p.X893_splice 0.11 TCGA-78-7158-01 8 117874162 117874162 C G RAD21 Missense_Mutation p.E98Q 0.28 deleterious(0.01) possibly_damaging(0.864) TCGA-78-7158-01 8 144130711 144130711 G T C8orf31 3'UTR 0.28 TCGA-78-7158-01 8 17132344 17132344 A T VPS37A Missense_Mutation p.L173F 0.79 tolerated(0.7) benign(0.121) TCGA-78-7158-01 8 2813272 2813272 G T CSMD1 Missense_Mutation p.P3278Q 0.56 probably_damaging(0.991) TCGA-78-7158-01 8 3000123 3000123 G T CSMD1 Nonsense_Mutation p.Y2035* 0.58 TCGA-78-7158-01 8 33454976 33454976 T C DUSP26 Missense_Mutation p.S20G 0.61 tolerated(0.18) benign(0.001) TCGA-78-7158-01 8 49833890 49833890 T C SNAI2 5'UTR 0.71 TCGA-78-7158-01 8 52321891 52321891 G T PXDNL Missense_Mutation p.R765S 0.75 deleterious(0.04) possibly_damaging(0.823) TCGA-78-7158-01 8 61748737 61748737 T A CHD7 Missense_Mutation p.I1295N 0.39 probably_damaging(0.993) TCGA-78-7158-01 8 77619931 77619931 C T ZFHX4 Missense_Mutation p.S914F 0.67 possibly_damaging(0.683) TCGA-78-7158-01 8 8748915 8748915 G A MFHAS1 Silent p.L552L 0.29 TCGA-78-7158-01 9 101749650 101749650 G A COL15A1 Silent p.S241S 0.45 TCGA-78-7158-01 9 114470151 114470151 C T C9orf84 Missense_Mutation p.E784K 0.08 tolerated(1) benign(0.002) TCGA-78-7158-01 9 125145816 125145816 C A PTGS1 Nonsense_Mutation p.S264* 0.50 TCGA-78-7158-01 9 126144289 126144289 G A DENND1A Missense_Mutation p.P818S 0.28 tolerated_low_confidence(0.11) possibly_damaging(0.611) TCGA-78-7158-01 9 130257628 130257628 G T LRSAM1 Missense_Mutation p.R543S 0.39 tolerated(0.21) benign(0.007) TCGA-78-7158-01 9 132576287 132576287 C A TOR1A Silent p.T321T 0.40 TCGA-78-7158-01 9 32633465 32633465 C A TAF1L Nonsense_Mutation p.E705* 0.36 TCGA-78-7158-01 9 32633466 32633466 C A TAF1L Missense_Mutation p.E704D 0.37 deleterious(0) probably_damaging(0.998) TCGA-78-7158-01 9 5921057 5921057 C T KIAA2026 Missense_Mutation p.A1647T 0.36 tolerated(0.72) benign(0.005) TCGA-78-7158-01 9 84548120 84548120 C T RP11-383M4.6 Intron 0.22 TCGA-78-7158-01 9 8518092 8518092 G A PTPRD Silent p.T433T 0.36 TCGA-78-7158-01 9 92220729 92220729 G T GADD45G Silent p.L101L 0.39 TCGA-78-7158-01 9 99160522 99160522 G T ZNF367 Missense_Mutation p.S165R 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-78-7158-01 X 107224606 107224606 G T TEX13B Missense_Mutation p.Q215K 0.25 tolerated(0.72) benign(0.003) TCGA-78-7158-01 X 11316772 11316772 C A AMELX Missense_Mutation p.H97Q 0.41 tolerated(0.13) unknown(0) TCGA-78-7158-01 X 118724577 118724577 C G NKRF Missense_Mutation p.V286L 0.42 tolerated(0.21) benign(0.093) TCGA-78-7158-01 X 13795473 13795473 C T GPM6B Missense_Mutation p.E257K 0.14 deleterious(0) possibly_damaging(0.54) TCGA-78-7158-01 X 139586865 139586865 C A SOX3 Missense_Mutation p.G121C 0.48 deleterious(0.01) probably_damaging(0.998) TCGA-78-7158-01 X 147011469 147011469 G T FMR1 Missense_Mutation p.C141F 0.47 deleterious(0) benign(0.17) TCGA-78-7158-01 X 147743891 147743891 T C AFF2 Missense_Mutation p.S215P 0.04 tolerated(0.22) benign(0.002) TCGA-78-7158-01 X 14915307 14915307 G T MOSPD2 Missense_Mutation p.G142W 0.39 deleterious(0) probably_damaging(1) TCGA-78-7158-01 X 150912084 150912084 A T CNGA2 Missense_Mutation p.N370I 0.45 deleterious(0) probably_damaging(1) TCGA-78-7158-01 X 151092682 151092682 C A MAGEA4 Nonsense_Mutation p.C182* 0.41 TCGA-78-7158-01 X 152159340 152159340 G T PNMA5 Missense_Mutation p.P268H 0.31 deleterious(0) probably_damaging(0.993) TCGA-78-7158-01 X 152914840 152914840 C A DUSP9 Missense_Mutation p.S176Y 0.58 deleterious(0) possibly_damaging(0.613) TCGA-78-7158-01 X 153880383 153880383 G T CTAG2 3'UTR 0.34 TCGA-78-7158-01 X 154261779 154261779 G A FUNDC2 Missense_Mutation p.E79K 0.04 deleterious(0.02) benign(0.049) TCGA-78-7158-01 X 19362105 19362105 C T PDHA1 5'UTR 0.50 TCGA-78-7158-01 X 24197628 24197628 G T ZFX Missense_Mutation p.M129I 0.39 tolerated(0.55) benign(0.001) TCGA-78-7158-01 X 47045157 47045157 G T RBM10 Nonsense_Mutation p.E800* 0.38 TCGA-78-7158-01 X 48418002 48418002 G T TBC1D25 Missense_Mutation p.V236L 0.42 deleterious(0) probably_damaging(0.994) TCGA-78-7158-01 X 48781242 48781242 G T OTUD5 Silent p.R456R 0.35 TCGA-78-7158-01 X 53457342 53457342 A G RIBC1 Splice_Site p.X222_splice 0.55 TCGA-78-7158-01 X 73524388 73524388 G T ZCCHC13 Missense_Mutation p.R96I 0.47 deleterious(0) probably_damaging(0.962) TCGA-78-7158-01 X 7889850 7889850 C T PNPLA4 Silent p.E105E 0.33 TCGA-78-7158-01 X 79932688 79932688 C A BRWD3 Missense_Mutation p.G1610V 0.44 deleterious_low_confidence(0.01) benign(0.08) TCGA-78-7158-01 X 82763435 82763435 C A POU3F4 Missense_Mutation p.Q35K 0.36 tolerated(0.43) benign(0.179) TCGA-78-7158-01 X 82764250 82764250 G T POU3F4 Missense_Mutation p.Q306H 0.65 tolerated(0.15) benign(0.012) TCGA-78-7158-01 X 82764251 82764251 G T POU3F4 Nonsense_Mutation p.E307* 0.65 TCGA-78-7159-01 10 102107276 102107276 G T SCD Missense_Mutation p.L5F 0.26 tolerated_low_confidence(0.05) possibly_damaging(0.495) TCGA-78-7159-01 10 116919973 116919973 A C ATRNL1 Silent p.L334L 0.32 TCGA-78-7159-01 10 118364984 118364984 G A PNLIPRP1 Nonsense_Mutation p.W420* 0.09 TCGA-78-7159-01 10 118385455 118385455 A T PNLIPRP2 Splice_Site p.X69_splice 0.46 TCGA-78-7159-01 10 123987490 123987490 G T TACC2 Missense_Mutation p.M2621I 0.20 possibly_damaging(0.658) TCGA-78-7159-01 10 135093312 135093312 C - TUBGCP2 Frame_Shift_Del p.P919Rfs*17 0.31 TCGA-78-7159-01 10 15713635 15713636 - A ITGA8 Frame_Shift_Ins p.A272Cfs*31 0.29 TCGA-78-7159-01 10 21115394 21115394 A C NEBL Missense_Mutation p.N617K 0.07 deleterious(0) possibly_damaging(0.7) TCGA-78-7159-01 10 43316126 43316128 AGC TT BMS1 Frame_Shift_Del p.A981Sfs*22 0.21 TCGA-78-7159-01 10 48371133 48371133 C A ZNF488 Missense_Mutation p.L201I 0.32 tolerated(1) benign(0.003) TCGA-78-7159-01 10 48428987 48428987 T A GDF10 Missense_Mutation p.D300V 0.40 deleterious(0) possibly_damaging(0.682) TCGA-78-7159-01 10 50121487 50121487 G C LRRC18 Silent p.P238P 0.34 TCGA-78-7159-01 10 5014794 5014794 G T AKR1C1 Silent p.P233P 0.17 TCGA-78-7159-01 10 58118116 58118116 C A ZWINT Intron 0.30 TCGA-78-7159-01 10 58119454 58119454 C A ZWINT Missense_Mutation p.Q139H 0.08 deleterious(0.01) possibly_damaging(0.563) TCGA-78-7159-01 10 61830089 61830089 T A ANK3 Missense_Mutation p.D3517V 0.26 probably_damaging(0.99) TCGA-78-7159-01 10 64958312 64958312 T A JMJD1C Missense_Mutation p.T1818S 0.34 tolerated(0.19) possibly_damaging(0.555) TCGA-78-7159-01 10 7679399 7679399 G T ITIH5 Silent p.P148P 0.15 TCGA-78-7159-01 10 858780 858780 C T LARP4B 3'UTR 0.33 TCGA-78-7159-01 10 88422065 88422065 G - OPN4 Frame_Shift_Del p.H389Tfs*16 0.16 TCGA-78-7159-01 10 95661084 95661084 G T SLC35G1 Missense_Mutation p.G312V 0.30 deleterious(0) possibly_damaging(0.823) TCGA-78-7159-01 10 96068457 96068457 G T PLCE1 Splice_Site p.X2001_splice 0.24 TCGA-78-7159-01 10 96084675 96084675 C - PLCE1 Frame_Shift_Del p.I2250Ffs*27 0.28 TCGA-78-7159-01 10 97626107 97626107 C A ENTPD1 Missense_Mutation p.H512Q 0.34 tolerated(0.27) benign(0.085) TCGA-78-7159-01 10 98311156 98311156 C A TM9SF3 Nonsense_Mutation p.G269* 0.29 TCGA-78-7159-01 11 108115600 108115601 CG - ATM Frame_Shift_Del p.R250Sfs*3 0.17 TCGA-78-7159-01 11 108186559 108186559 T - ATM Frame_Shift_Del p.L2006* 0.25 TCGA-78-7159-01 11 111368781 111368781 G T BTG4 Missense_Mutation p.H85N 0.40 tolerated(0.16) benign(0.038) TCGA-78-7159-01 11 128781777 128781777 C A KCNJ5 Silent p.S203S 0.10 TCGA-78-7159-01 11 132177606 132177606 G T NTM Nonsense_Mutation p.E184* 0.14 TCGA-78-7159-01 11 3740728 3740728 C A NUP98 Missense_Mutation p.L771F 0.39 tolerated(0.05) probably_damaging(0.999) TCGA-78-7159-01 11 43340233 43340233 G A API5 Missense_Mutation p.G38D 0.26 tolerated(0.41) benign(0.075) TCGA-78-7159-01 11 45277237 45277237 A T SYT13 Missense_Mutation p.L130Q 0.18 deleterious(0.02) benign(0.06) TCGA-78-7159-01 11 4566822 4566822 T C OR52M1 Silent p.H134H 0.14 TCGA-78-7159-01 11 4594548 4594548 C A C11orf40 Missense_Mutation p.C99F 0.24 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-78-7159-01 11 48328158 48328158 G T OR4S1 Silent p.L128L 0.27 TCGA-78-7159-01 11 51515998 51515998 C A OR4C46 Silent p.V239V 0.10 TCGA-78-7159-01 11 5173339 5173339 G C OR52A1 Missense_Mutation p.F87L 0.21 tolerated(0.07) benign(0.162) TCGA-78-7159-01 11 55340262 55340262 T G OR4C16 Missense_Mutation p.L220W 0.23 deleterious(0.01) probably_damaging(1) TCGA-78-7159-01 11 55563554 55563554 G C OR5D14 Missense_Mutation p.V175L 0.18 tolerated(0.07) benign(0.012) TCGA-78-7159-01 11 56380513 56380513 C T OR5M1 Missense_Mutation p.G156R 0.20 deleterious(0) probably_damaging(1) TCGA-78-7159-01 11 59224911 59224911 G A OR4D6 Missense_Mutation p.V160I 0.40 tolerated(1) benign(0.009) TCGA-78-7159-01 11 60889151 60889151 C A CD5 Missense_Mutation p.R292S 0.24 tolerated(0.15) probably_damaging(0.971) TCGA-78-7159-01 11 61291321 61291321 G A SYT7 Silent p.A370A 0.39 TCGA-78-7159-01 11 6238611 6238611 C G FAM160A2 Missense_Mutation p.Q749H 0.24 tolerated(0.33) possibly_damaging(0.787) TCGA-78-7159-01 11 62997100 62997100 G T SLC22A25 Missense_Mutation p.Q9K 0.40 tolerated(0.18) benign(0.013) TCGA-78-7159-01 11 6478952 6478952 C A TRIM3 Missense_Mutation p.Q163H 0.27 tolerated(0.07) benign(0.109) TCGA-78-7159-01 11 65265461 65265461 A C MALAT1 RNA 0.06 TCGA-78-7159-01 11 70033898 70033898 A G ANO1 Missense_Mutation p.K917E 0.27 deleterious(0) probably_damaging(0.999) TCGA-78-7159-01 11 70282409 70282409 G T CTTN Missense_Mutation p.R600S 0.27 tolerated_low_confidence(0.48) benign(0) TCGA-78-7159-01 11 7065059 7065059 G A NLRP14 Missense_Mutation p.C601Y 0.24 tolerated(1) benign(0) TCGA-78-7159-01 11 73008546 73008546 G A P2RY6 Missense_Mutation p.R328H 0.25 tolerated_low_confidence(0.15) benign(0.001) TCGA-78-7159-01 11 75319368 75319369 CT - MAP6 Splice_Site p.X302_splice 0.11 TCGA-78-7159-01 11 76892594 76892594 G T MYO7A Missense_Mutation p.G955C 0.22 deleterious(0) possibly_damaging(0.698) TCGA-78-7159-01 11 76892595 76892595 G T MYO7A Missense_Mutation p.G955V 0.22 tolerated(0.07) benign(0.208) TCGA-78-7159-01 11 76924959 76924959 A G MYO7A Missense_Mutation p.T2165A 0.20 deleterious(0) probably_damaging(0.99) TCGA-78-7159-01 12 10766170 10766170 T G MAGOHB 5'UTR 0.20 TCGA-78-7159-01 12 111290717 111290717 G T CCDC63 5'UTR 0.17 TCGA-78-7159-01 12 11286256 11286256 C A TAS2R30 Silent p.L196L 0.22 TCGA-78-7159-01 12 13208723 13208723 G T KIAA1467 Missense_Mutation p.Q92H 0.28 deleterious(0.03) possibly_damaging(0.834) TCGA-78-7159-01 12 15713124 15713124 C A PTPRO Intron 0.25 TCGA-78-7159-01 12 26218312 26218312 C T RASSF8 Missense_Mutation p.R329C 0.27 deleterious(0.01) possibly_damaging(0.635) TCGA-78-7159-01 12 31242051 31242051 A T DDX11 Missense_Mutation p.K253M 0.31 deleterious(0.01) probably_damaging(0.964) TCGA-78-7159-01 12 32480553 32480553 G T BICD1 Missense_Mutation p.K388N 0.40 tolerated(0.29) benign(0.077) TCGA-78-7159-01 12 33579232 33579232 T G SYT10 Missense_Mutation p.K117T 0.13 tolerated(0.33) benign(0.045) TCGA-78-7159-01 12 40115022 40115022 C A C12orf40 Missense_Mutation p.T643N 0.34 deleterious(0) probably_damaging(0.999) TCGA-78-7159-01 12 4383338 4383338 C T CCND2 Silent p.F44F 0.33 TCGA-78-7159-01 12 43847712 43847712 A T ADAMTS20 Silent p.P586P 0.23 TCGA-78-7159-01 12 44161952 44161952 G T IRAK4 Missense_Mutation p.C13F 0.19 deleterious(0.04) benign(0.054) TCGA-78-7159-01 12 44915854 44915854 G T NELL2 Missense_Mutation p.H752N 0.20 tolerated(0.07) probably_damaging(0.995) TCGA-78-7159-01 12 52845777 52845777 C A KRT6B Missense_Mutation p.S29I 0.37 deleterious(0.02) unknown(0) TCGA-78-7159-01 12 53853102 53853102 C T PCBP2 Missense_Mutation p.P97L 0.27 deleterious(0.03) benign(0.029) TCGA-78-7159-01 12 57843451 57843451 A T INHBC Silent p.R235R 0.29 TCGA-78-7159-01 12 6649586 6649586 C A IFFO1 3'UTR 0.32 TCGA-78-7159-01 12 70049315 70049315 G T BEST3 Missense_Mutation p.P460H 0.29 deleterious(0.01) possibly_damaging(0.606) TCGA-78-7159-01 13 101728231 101728231 C G NALCN Missense_Mutation p.G1316A 0.43 deleterious(0.02) probably_damaging(0.991) TCGA-78-7159-01 13 101728232 101728232 C A NALCN Nonsense_Mutation p.G1316* 0.45 TCGA-78-7159-01 13 24876744 24876744 A T SPATA13 Missense_Mutation p.R1223W 0.20 deleterious(0.03) benign(0.116) TCGA-78-7159-01 13 47409077 47409077 C T HTR2A Silent p.K437K 0.13 TCGA-78-7159-01 13 52513211 52513211 C T ATP7B Silent p.K1225K 0.42 TCGA-78-7159-01 13 70681438 70681438 C T KLHL1 Missense_Mutation p.G132S 0.43 tolerated_low_confidence(0.72) benign(0.009) TCGA-78-7159-01 13 77900726 77900726 C A MYCBP2 Missense_Mutation p.G24V 0.24 benign(0.004) TCGA-78-7159-01 13 84454234 84454234 A T SLITRK1 Missense_Mutation p.M470K 0.10 deleterious(0) possibly_damaging(0.478) TCGA-78-7159-01 13 94679996 94679996 C A GPC6 Missense_Mutation p.P242Q 0.12 tolerated(0.21) possibly_damaging(0.464) TCGA-78-7159-01 14 100129283 100129283 G T HHIPL1 Missense_Mutation p.G525C 0.20 deleterious(0) probably_damaging(0.996) TCGA-78-7159-01 14 102549360 102549360 T C HSP90AA1 Intron 0.07 TCGA-78-7159-01 14 19553735 19553735 C T POTEG Missense_Mutation p.P107S 0.08 tolerated_low_confidence(0.05) benign(0.14) TCGA-78-7159-01 14 20019902 20019902 G A POTEM Missense_Mutation p.P107S 0.17 tolerated_low_confidence(0.05) benign(0.025) TCGA-78-7159-01 14 20859156 20859156 C A TEP1 Missense_Mutation p.V733L 0.16 tolerated(0.26) benign(0.118) TCGA-78-7159-01 14 22931922 22931922 A T TRDJ3 3'Flank 0.33 TCGA-78-7159-01 14 23887558 23887558 G T MYH7 Silent p.R1344R 0.12 TCGA-78-7159-01 14 51401905 51401905 T A PYGL Splice_Site p.X116_splice 0.44 TCGA-78-7159-01 14 69256753 69256753 G A ZFP36L1 Missense_Mutation p.R172C 0.16 deleterious(0) probably_damaging(0.982) TCGA-78-7159-01 14 71555084 71555084 T G PCNX Missense_Mutation p.L1792R 0.60 deleterious(0) probably_damaging(0.922) TCGA-78-7159-01 14 75279466 75279466 G T YLPM1 Missense_Mutation p.R1828L 0.44 probably_damaging(0.998) TCGA-78-7159-01 14 81371171 81371171 C T CEP128 Missense_Mutation p.D156N 0.47 tolerated(0.1) possibly_damaging(0.841) TCGA-78-7159-01 14 89205241 89205241 T C EML5 Missense_Mutation p.T277A 0.33 tolerated(0.34) benign(0.017) TCGA-78-7159-01 14 97321607 97321607 G T VRK1 Missense_Mutation p.G208V 0.10 deleterious(0) probably_damaging(0.997) TCGA-78-7159-01 15 25221464 25221464 G T SNRPN Silent p.A56A 0.23 TCGA-78-7159-01 15 25453123 25453123 G T SNORD115-22 5'Flank 0.08 TCGA-78-7159-01 15 28465650 28465650 C T HERC2 Silent p.L1931L 0.25 TCGA-78-7159-01 15 31324973 31324973 G T TRPM1 Silent p.I974I 0.34 TCGA-78-7159-01 15 31339443 31339443 C A TRPM1 Silent p.P562P 0.15 TCGA-78-7159-01 15 34295248 34295248 G T AVEN Missense_Mutation p.L144I 0.25 deleterious(0.02) possibly_damaging(0.73) TCGA-78-7159-01 15 40657403 40657403 G A DISP2 Missense_Mutation p.A259T 0.16 tolerated(0.56) benign(0.003) TCGA-78-7159-01 15 41828728 41828728 G C RPAP1 Missense_Mutation p.H101D 0.16 deleterious(0) probably_damaging(0.997) TCGA-78-7159-01 15 72954779 72954779 T A GOLGA6B Missense_Mutation p.M345K 0.37 tolerated(0.27) benign(0.092) TCGA-78-7159-01 15 83932483 83932483 A T BNC1 Missense_Mutation p.I507K 0.28 tolerated(0.38) benign(0.03) TCGA-78-7159-01 15 89400503 89400503 G C ACAN Missense_Mutation p.G1563R 0.49 tolerated(0.57) possibly_damaging(0.566) TCGA-78-7159-01 16 18603969 18603969 G A ABCC6P1 RNA 0.24 TCGA-78-7159-01 16 20781403 20781403 T C ACSM3 Missense_Mutation p.F16S 0.62 tolerated(0.07) benign(0.127) TCGA-78-7159-01 16 29912884 29912884 G T ASPHD1 Missense_Mutation p.A198S 0.48 tolerated(0.37) benign(0.007) TCGA-78-7159-01 16 48249175 48249175 T A ABCC11 Missense_Mutation p.E344D 0.08 deleterious(0) probably_damaging(1) TCGA-78-7159-01 16 48249177 48249177 C A ABCC11 Nonsense_Mutation p.E344* 0.08 TCGA-78-7159-01 16 58537747 58537747 C A NDRG4 Silent p.R75R 0.53 TCGA-78-7159-01 16 71423651 71423651 G T CALB2 Splice_Site p.X234_splice 0.31 TCGA-78-7159-01 16 71423652 71423652 G T CALB2 Nonsense_Mutation p.E234* 0.31 TCGA-78-7159-01 16 81145941 81145941 C A PKD1L2 RNA 0.39 TCGA-78-7159-01 16 848524 848524 G T GNG13 3'UTR 0.42 TCGA-78-7159-01 16 89645307 89645307 G T CPNE7 Missense_Mutation p.V134F 0.36 tolerated(0.07) benign(0.004) TCGA-78-7159-01 17 10401191 10401191 C A MYH1 Nonsense_Mutation p.E1409* 0.17 TCGA-78-7159-01 17 11666872 11666872 G C DNAH9 Missense_Mutation p.E2371Q 0.34 probably_damaging(0.977) TCGA-78-7159-01 17 21825561 21825561 C A FAM27L RNA 0.27 TCGA-78-7159-01 17 26881313 26881313 C T PIGS Silent p.V531V 0.39 TCGA-78-7159-01 17 26898184 26898184 G A PIGS Silent p.A19A 0.33 TCGA-78-7159-01 17 27285150 27285150 C T SEZ6 Missense_Mutation p.R706H 0.25 deleterious(0) probably_damaging(0.999) TCGA-78-7159-01 17 28747973 28747973 G A CPD Missense_Mutation p.R370H 0.26 deleterious(0) probably_damaging(0.966) TCGA-78-7159-01 17 34313569 34313569 G T CTB-186H2.3 Splice_Site p.X6_splice 0.23 TCGA-78-7159-01 17 39138696 39138696 G T KRT40 Missense_Mutation p.L184I 0.38 deleterious(0.04) probably_damaging(0.998) TCGA-78-7159-01 17 39183212 39183212 A T KRTAP1-5 Missense_Mutation p.C66S 0.27 tolerated(0.05) unknown(0) TCGA-78-7159-01 17 39553599 39553599 C G KRT31 Missense_Mutation p.D65H 0.27 deleterious(0.01) probably_damaging(0.985) TCGA-78-7159-01 17 39680687 39680688 - T KRT19 Frame_Shift_Ins p.Y256Ifs*2 0.09 TCGA-78-7159-01 17 39964116 39964116 G - LEPREL4 Frame_Shift_Del p.R353Gfs*130 0.28 TCGA-78-7159-01 17 41063145 41063145 C A G6PC Missense_Mutation p.A259D 0.31 deleterious(0) probably_damaging(0.999) TCGA-78-7159-01 17 5085550 5085550 C A ZNF594 Missense_Mutation p.A668S 0.33 tolerated(0.35) benign(0.026) TCGA-78-7159-01 17 58144875 58144875 G A HEATR6 Silent p.F386F 0.31 TCGA-78-7159-01 17 61615428 61615428 C A KCNH6 Missense_Mutation p.L502M 0.36 deleterious(0) probably_damaging(0.988) TCGA-78-7159-01 17 62020280 62020280 C T SCN4A Silent p.G1398G 0.35 TCGA-78-7159-01 17 6718555 6718555 C T TEKT1 Missense_Mutation p.D186N 0.22 tolerated(0.15) benign(0.013) TCGA-78-7159-01 17 68172471 68172471 G T KCNJ2 3'UTR 0.33 TCGA-78-7159-01 17 7221650 7221650 C G NEURL4 Missense_Mutation p.G1297A 0.40 tolerated(0.8) benign(0.002) TCGA-78-7159-01 17 72436210 72436210 G T GPRC5C Missense_Mutation p.G144C 0.31 deleterious(0) probably_damaging(1) TCGA-78-7159-01 17 72436211 72436211 G T GPRC5C Missense_Mutation p.G144V 0.30 deleterious(0) probably_damaging(1) TCGA-78-7159-01 17 8018264 8018264 C A ALOXE3 Missense_Mutation p.Q314H 0.32 tolerated(0.12) possibly_damaging(0.711) TCGA-78-7159-01 17 8172508 8172508 G T PFAS Missense_Mutation p.D1315Y 0.28 deleterious(0.04) benign(0.158) TCGA-78-7159-01 17 8455408 8455408 T C MYH10 Missense_Mutation p.H292R 0.23 probably_damaging(0.995) TCGA-78-7159-01 18 13056511 13056511 G T CEP192 Missense_Mutation p.V1308L 0.39 tolerated(0.16) benign(0.221) TCGA-78-7159-01 18 29205658 29205658 C A B4GALT6 Missense_Mutation p.R356S 0.38 tolerated(0.8) benign(0) TCGA-78-7159-01 18 29447398 29447398 T G TRAPPC8 Silent p.S810S 0.27 TCGA-78-7159-01 18 43204731 43204731 C T SLC14A2 Silent p.S34S 0.26 TCGA-78-7159-01 18 45394791 45394791 G A SMAD2 Silent p.I186I 0.45 TCGA-78-7159-01 18 64211367 64211367 G A CDH19 Missense_Mutation p.A352V 0.15 deleterious(0.02) possibly_damaging(0.661) TCGA-78-7159-01 18 66344377 66344377 C T TMX3 Silent p.L386L 0.35 TCGA-78-7159-01 18 76754025 76754025 G T SALL3 Silent p.P678P 0.35 TCGA-78-7159-01 18 8784761 8784761 A T SOGA2 Missense_Mutation p.S551C 0.22 deleterious(0) probably_damaging(1) TCGA-78-7159-01 19 12155620 12155620 T C ZNF878 Missense_Mutation p.Y199C 0.04 deleterious(0.01) probably_damaging(1) TCGA-78-7159-01 19 1221254 1221254 C - STK11 Frame_Shift_Del p.N259Kfs*28 0.33 TCGA-78-7159-01 19 1506627 1506627 C A ADAMTSL5 Missense_Mutation p.R359L 0.73 deleterious(0) possibly_damaging(0.72) TCGA-78-7159-01 19 16890214 16890214 G A NWD1 Missense_Mutation p.G890D 0.39 deleterious(0.01) benign(0.273) TCGA-78-7159-01 19 18989736 18989736 C T CERS1 Intron 0.32 TCGA-78-7159-01 19 20117752 20117752 C A ZNF682 Missense_Mutation p.G187C 0.26 tolerated(0.12) possibly_damaging(0.84) TCGA-78-7159-01 19 30934662 30934662 G T ZNF536 Nonsense_Mutation p.E65* 0.37 TCGA-78-7159-01 19 35551631 35551631 G T HPN Missense_Mutation p.G241W 0.19 deleterious(0) probably_damaging(0.994) TCGA-78-7159-01 19 37441573 37441573 A T ZNF568 Silent p.V506V 0.22 TCGA-78-7159-01 19 39592142 39592142 C A PAPL Missense_Mutation p.P360T 0.52 deleterious(0) probably_damaging(0.988) TCGA-78-7159-01 19 40420076 40420076 G T FCGBP Missense_Mutation p.T973K 0.22 probably_damaging(0.993) TCGA-78-7159-01 19 48374763 48374763 C A SULT2A1 Missense_Mutation p.L269F 0.28 deleterious(0.02) benign(0.061) TCGA-78-7159-01 19 50245190 50245190 G T TSKS Silent p.G483G 0.29 TCGA-78-7159-01 19 51015483 51015483 A T ASPDH Missense_Mutation p.F240I 0.16 deleterious(0) possibly_damaging(0.511) TCGA-78-7159-01 19 51826946 51826946 G T IGLON5 Silent p.V63V 0.20 TCGA-78-7159-01 19 51826947 51826947 G T IGLON5 Missense_Mutation p.A64S 0.20 deleterious(0) probably_damaging(0.951) TCGA-78-7159-01 19 54407997 54407997 G T PRKCG Splice_Site p.X588_splice 0.40 TCGA-78-7159-01 19 5455572 5455572 C T ZNRF4 Silent p.L24L 0.27 TCGA-78-7159-01 19 54561782 54561782 C T VSTM1 Missense_Mutation p.V45M 0.15 deleterious(0) probably_damaging(1) TCGA-78-7159-01 19 56390295 56390295 C A NLRP4 Silent p.A944A 0.37 TCGA-78-7159-01 19 56691994 56691994 C T GALP Silent p.L43L 0.28 TCGA-78-7159-01 19 57326879 57326879 G T PEG3 Nonsense_Mutation p.C977* 0.11 TCGA-78-7159-01 19 57654037 57654037 G C ZIM3 5'UTR 0.27 TCGA-78-7159-01 19 57803456 57803456 G C ZNF460 Missense_Mutation p.S516T 0.15 tolerated(0.41) benign(0.029) TCGA-78-7159-01 19 58199379 58199379 G C ZNF551 Missense_Mutation p.R579T 0.09 deleterious(0) probably_damaging(0.999) TCGA-78-7159-01 1 101188624 101188624 G A VCAM1 Missense_Mutation p.G130E 0.19 deleterious(0.03) benign(0.296) TCGA-78-7159-01 1 108507383 108507383 G C VAV3 Missense_Mutation p.L37V 0.21 deleterious(0) possibly_damaging(0.898) TCGA-78-7159-01 1 113459922 113459922 C A SLC16A1 Missense_Mutation p.W369L 0.38 tolerated(0.56) benign(0.036) TCGA-78-7159-01 1 115576107 115576107 A G TSHB Missense_Mutation p.I42V 0.14 tolerated(0.23) benign(0.074) TCGA-78-7159-01 1 12979978 12979978 G T PRAMEF7 Missense_Mutation p.M390I 0.13 benign(0.106) TCGA-78-7159-01 1 150444633 150444633 C G RPRD2 Missense_Mutation p.S1070C 0.05 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-78-7159-01 1 152059651 152059651 T A TCHHL1 Silent p.P169P 0.37 TCGA-78-7159-01 1 152636910 152636910 G A LCE2D Missense_Mutation p.C110Y 0.40 deleterious_low_confidence(0) unknown(0) TCGA-78-7159-01 1 15893602 15893603 - T DNAJC16 Frame_Shift_Ins p.K597* 0.16 TCGA-78-7159-01 1 159505512 159505512 C T OR10J5 Missense_Mutation p.G96S 0.25 tolerated(0.15) benign(0.356) TCGA-78-7159-01 1 161512686 161512686 T A FCGR3A 3'UTR 0.22 TCGA-78-7159-01 1 169292473 169292473 T A NME7 Missense_Mutation p.N54Y 0.11 deleterious(0.01) benign(0.377) TCGA-78-7159-01 1 175355258 175355258 C G TNR Missense_Mutation p.A563P 0.33 tolerated(0.21) probably_damaging(0.981) TCGA-78-7159-01 1 176525416 176525416 C A PAPPA2 5'UTR 0.36 TCGA-78-7159-01 1 176863850 176863850 G T ASTN1 Missense_Mutation p.R930S 0.21 deleterious(0.01) benign(0.287) TCGA-78-7159-01 1 179521776 179521776 C A NPHS2 Missense_Mutation p.A279S 0.12 tolerated(0.08) probably_damaging(0.982) TCGA-78-7159-01 1 179521777 179521777 C G NPHS2 Silent p.L278L 0.12 TCGA-78-7159-01 1 181693670 181693670 C A CACNA1E Silent p.T713T 0.28 TCGA-78-7159-01 1 181764047 181764047 G C CACNA1E Silent p.R2025R 0.42 TCGA-78-7159-01 1 197062214 197062214 C T ASPM Missense_Mutation p.A3088T 0.49 deleterious(0.02) possibly_damaging(0.629) TCGA-78-7159-01 1 197522116 197522116 G T DENND1B Missense_Mutation p.Q426K 0.12 tolerated_low_confidence(0.25) benign(0) TCGA-78-7159-01 1 201028356 201028356 G T CACNA1S Silent p.T1162T 0.40 TCGA-78-7159-01 1 201046253 201046253 T A CACNA1S Missense_Mutation p.Y541F 0.12 deleterious(0) possibly_damaging(0.88) TCGA-78-7159-01 1 201749685 201749685 G A NAV1 Missense_Mutation p.V455M 0.26 tolerated(0.34) benign(0.028) TCGA-78-7159-01 1 216270486 216270486 T A USH2A Missense_Mutation p.Q1566L 0.12 probably_damaging(0.998) TCGA-78-7159-01 1 217604634 217604634 C A GPATCH2 Missense_Mutation p.W480C 0.41 deleterious(0) probably_damaging(1) TCGA-78-7159-01 1 22078009 22078009 T C USP48 Silent p.E255E 0.09 TCGA-78-7159-01 1 228645213 228645213 G C HIST3H2A Silent p.T102T 0.22 TCGA-78-7159-01 1 237754280 237754280 G A RYR2 Missense_Mutation p.R1383H 0.27 benign(0.001) TCGA-78-7159-01 1 241767559 241767559 C T OPN3 Intron 0.32 TCGA-78-7159-01 1 247611773 247611773 T C NLRP3 Silent p.P1026P 0.42 TCGA-78-7159-01 1 248059177 248059177 T A OR2W3 Missense_Mutation p.C97S 0.28 deleterious(0) probably_damaging(0.999) TCGA-78-7159-01 1 248224272 248224272 G T OR2L3 Missense_Mutation p.G97W 0.28 deleterious(0.01) benign(0.112) TCGA-78-7159-01 1 248263215 248263215 G T OR2L13 Missense_Mutation p.V180F 0.31 deleterious(0.02) possibly_damaging(0.776) TCGA-78-7159-01 1 248524987 248524987 G T OR2T4 Missense_Mutation p.M35I 0.39 tolerated(0.09) benign(0.004) TCGA-78-7159-01 1 248569881 248569881 G A OR2T1 Missense_Mutation p.A196T 0.23 tolerated(0.07) benign(0.417) TCGA-78-7159-01 1 28905316 28905316 G A TRNAU1AP 3'Flank 0.32 TCGA-78-7159-01 1 45500130 45500130 A G ZSWIM5 Missense_Mutation p.L768S 0.33 deleterious(0) unknown(0) TCGA-78-7159-01 1 46976691 46976691 G T DMBX1 Nonsense_Mutation p.E140* 0.41 TCGA-78-7159-01 1 76205735 76205735 G T ACADM Missense_Mutation p.G184V 0.20 deleterious(0) probably_damaging(0.974) TCGA-78-7159-01 1 76877814 76877814 C A ST6GALNAC3 Missense_Mutation p.T112N 0.33 probably_damaging(0.947) TCGA-78-7159-01 1 76877815 76877815 C A ST6GALNAC3 Silent p.T112T 0.32 TCGA-78-7159-01 1 78269059 78269059 A T FAM73A Nonsense_Mutation p.K160* 0.43 TCGA-78-7159-01 1 84956127 84956127 T A RPF1 Silent p.I196I 0.33 TCGA-78-7159-01 1 99771281 99771281 G A LPPR4 Missense_Mutation p.S336N 0.10 tolerated(0.46) benign(0.001) TCGA-78-7159-01 20 10623158 10623158 G C JAG1 Missense_Mutation p.H850Q 0.09 deleterious(0.03) benign(0.034) TCGA-78-7159-01 20 36662302 36662302 G T RPRD1B 5'UTR 0.40 TCGA-78-7159-01 20 53260108 53260108 C A DOK5 Missense_Mutation p.R283S 0.26 tolerated_low_confidence(1) benign(0) TCGA-78-7159-01 20 60581652 60581652 C T TAF4 Missense_Mutation p.V713M 0.43 possibly_damaging(0.869) TCGA-78-7159-01 20 62729200 62729200 G T OPRL1 Silent p.L93L 0.33 TCGA-78-7159-01 21 22658718 22658718 C - NCAM2 Frame_Shift_Del p.T157Lfs*10 0.11 TCGA-78-7159-01 21 34123457 34123457 C A PAXBP1 Missense_Mutation p.R527L 0.17 tolerated(0.07) probably_damaging(0.985) TCGA-78-7159-01 21 46086478 46086478 C T KRTAP12-2 Missense_Mutation p.S109N 0.17 tolerated(0.21) possibly_damaging(0.587) TCGA-78-7159-01 22 22937243 22937243 G T IGLV3-32 Missense_Mutation p.G21W 0.33 deleterious(0.01) possibly_damaging(0.824) TCGA-78-7159-01 22 29521313 29521313 C T KREMEN1 Silent p.Y180Y 0.42 TCGA-78-7159-01 22 32498113 32498113 C T SLC5A1 Silent p.P518P 0.07 TCGA-78-7159-01 22 45110519 45110519 C A PRR5 Missense_Mutation p.D84E 0.22 tolerated(0.4) benign(0.394) TCGA-78-7159-01 22 46762935 46762935 C A CELSR1 Missense_Mutation p.K2720N 0.45 deleterious(0.02) benign(0.117) TCGA-78-7159-01 2 113514765 113514765 G C CKAP2L Silent p.T61T 0.07 TCGA-78-7159-01 2 11728869 11728869 C A GREB1 Intron 0.29 TCGA-78-7159-01 2 141130675 141130675 T A LRP1B Missense_Mutation p.Q3557L 0.42 benign(0.227) TCGA-78-7159-01 2 158406824 158406824 C T ACVR1C Missense_Mutation p.V209M 0.13 deleterious(0) probably_damaging(0.999) TCGA-78-7159-01 2 16742303 16742303 C G FAM49A Missense_Mutation p.C222S 0.27 deleterious(0.01) possibly_damaging(0.589) TCGA-78-7159-01 2 174231031 174231031 C T CDCA7 Silent p.C352C 0.28 TCGA-78-7159-01 2 1914044 1914044 G C MYT1L Silent p.S593S 0.40 TCGA-78-7159-01 2 1914045 1914045 G C MYT1L Missense_Mutation p.S593C 0.38 deleterious(0.02) probably_damaging(0.976) TCGA-78-7159-01 2 228883255 228883255 G A SPHKAP Missense_Mutation p.S772F 0.21 tolerated(0.06) benign(0.041) TCGA-78-7159-01 2 233322984 233322984 C T ALPI Missense_Mutation p.A350V 0.25 tolerated(0.07) benign(0.152) TCGA-78-7159-01 2 33498809 33498809 G A LTBP1 Missense_Mutation p.E902K 0.35 tolerated(0.25) benign(0.003) TCGA-78-7159-01 2 48725646 48725646 G T PPP1R21 Missense_Mutation p.L569F 0.41 tolerated(0.07) probably_damaging(0.989) TCGA-78-7159-01 2 50724812 50724812 G T NRXN1 Missense_Mutation p.N886K 0.34 deleterious(0) probably_damaging(0.996) TCGA-78-7159-01 2 72360350 72360350 G T CYP26B1 Silent p.P316P 0.21 TCGA-78-7159-01 2 72362006 72362006 T A CYP26B1 Nonsense_Mutation p.K249* 0.16 TCGA-78-7159-01 2 79350037 79350037 G T REG1A Missense_Mutation p.S131I 0.30 tolerated(0.64) benign(0.007) TCGA-78-7159-01 2 90154111 90154111 C G IGKV3D-15 Silent p.L66L 0.32 TCGA-78-7159-01 3 112642483 112642483 A T CD200R1 3'UTR 0.20 TCGA-78-7159-01 3 125836866 125836866 C - ALDH1L1 Frame_Shift_Del p.G665Afs*5 0.25 TCGA-78-7159-01 3 130290003 130290003 C A COL6A6 Missense_Mutation p.L915I 0.52 deleterious(0) probably_damaging(0.999) TCGA-78-7159-01 3 146177780 146177780 C T PLSCR2 Missense_Mutation p.G44E 0.40 deleterious(0.05) benign(0.08) TCGA-78-7159-01 3 149040216 149040216 T A TM4SF18 Missense_Mutation p.T140S 0.23 tolerated(0.69) benign(0.065) TCGA-78-7159-01 3 15512054 15512054 G T COLQ Silent p.R236R 0.22 TCGA-78-7159-01 3 180334315 180334315 A G CCDC39 Missense_Mutation p.Y859H 0.25 tolerated(0.18) benign(0.073) TCGA-78-7159-01 3 187387016 187387016 G A SST Missense_Mutation p.T63M 0.13 deleterious(0.03) benign(0.001) TCGA-78-7159-01 3 195022774 195022774 C A ACAP2 Missense_Mutation p.D416Y 0.27 deleterious(0) probably_damaging(1) TCGA-78-7159-01 3 196387130 196387130 G C NRROS Missense_Mutation p.E206Q 0.36 tolerated(0.38) benign(0.011) TCGA-78-7159-01 3 27332782 27332782 C A NEK10 Nonsense_Mutation p.G526* 0.46 TCGA-78-7159-01 3 27758588 27758588 C A EOMES Silent p.G678G 0.11 TCGA-78-7159-01 3 37360619 37360619 G C GOLGA4 Missense_Mutation p.E515D 0.31 benign(0.113) TCGA-78-7159-01 3 38797307 38797307 C T SCN10A Missense_Mutation p.R478H 0.06 tolerated(0.1) benign(0.001) TCGA-78-7159-01 3 424181 424181 A T CHL1 Missense_Mutation p.N668I 0.23 deleterious(0) probably_damaging(0.979) TCGA-78-7159-01 3 42917134 42917134 G T CYP8B1 Missense_Mutation p.R59S 0.36 deleterious(0.04) benign(0.216) TCGA-78-7159-01 3 42917135 42917135 C T CYP8B1 Silent p.K58K 0.37 TCGA-78-7159-01 3 51251551 51251551 A T DOCK3 Splice_Site p.X376_splice 0.29 TCGA-78-7159-01 3 6903419 6903419 C T GRM7 Missense_Mutation p.A115V 0.11 deleterious(0) possibly_damaging(0.637) TCGA-78-7159-01 3 88040472 88040472 C T HTR1F Silent p.Y191Y 0.35 TCGA-78-7159-01 3 97167415 97167415 C A EPHA6 Missense_Mutation p.H579N 0.19 tolerated(0.14) possibly_damaging(0.571) TCGA-78-7159-01 3 97984019 97984019 A T OR5H6 Silent p.I297I 0.41 TCGA-78-7159-01 4 114158246 114158246 T A ANK2 Missense_Mutation p.L196Q 0.49 probably_damaging(1) TCGA-78-7159-01 4 115585282 115585282 A G UGT8 Silent p.K318K 0.18 TCGA-78-7159-01 4 134071225 134071246 GTTTCGTGGTGGTGGGGGAGGT TTTTTCGGGGGGGGGGGGGGGGG PCDH10 5'UTR 0.10 TCGA-78-7159-01 4 138442189 138442189 C A PCDH18 Missense_Mutation p.Q1134H 0.26 tolerated(0.14) benign(0.055) TCGA-78-7159-01 4 138442848 138442848 T C PCDH18 Missense_Mutation p.M915V 0.46 tolerated(0.12) benign(0.387) TCGA-78-7159-01 4 174292327 174292327 C G SAP30 5'UTR 0.17 TCGA-78-7159-01 4 176594958 176594958 C A GPM6A Missense_Mutation p.G87V 0.30 deleterious(0) probably_damaging(1) TCGA-78-7159-01 4 176594959 176594959 C G GPM6A Missense_Mutation p.G87R 0.30 deleterious(0) probably_damaging(1) TCGA-78-7159-01 4 183713425 183713425 A G TENM3 Splice_Site p.X1868_splice 0.27 TCGA-78-7159-01 4 20490581 20490581 C G SLIT2 Missense_Mutation p.Q251E 0.16 tolerated(0.07) probably_damaging(0.991) TCGA-78-7159-01 4 20591325 20591325 C T SLIT2 Silent p.H1049H 0.15 TCGA-78-7159-01 4 2307147 2307147 G A ZFYVE28 Missense_Mutation p.A307V 0.29 tolerated(0.13) benign(0.005) TCGA-78-7159-01 4 25669599 25669599 G A SLC34A2 Silent p.R207R 0.78 TCGA-78-7159-01 4 30921902 30921903 - A PCDH7 Frame_Shift_Ins p.R1102Kfs*13 0.17 TCGA-78-7159-01 4 39271619 39271619 G A WDR19 Missense_Mutation p.V1128I 0.11 tolerated(0.05) benign(0.034) TCGA-78-7159-01 4 436078 436078 T A ZNF721 Missense_Mutation p.K726N 0.27 deleterious(0.02) possibly_damaging(0.607) TCGA-78-7159-01 4 72400105 72400105 G T SLC4A4 Missense_Mutation p.K814N 0.26 deleterious(0.01) probably_damaging(0.969) TCGA-78-7159-01 4 74847209 74847209 G T PF4 Missense_Mutation p.S48Y 0.32 deleterious(0) possibly_damaging(0.596) TCGA-78-7159-01 4 77816994 77816994 C A SOWAHB Missense_Mutation p.G670V 0.15 deleterious(0) probably_damaging(0.988) TCGA-78-7159-01 4 87749282 87749282 C T SLC10A6 Missense_Mutation p.A209T 0.13 tolerated(0.22) benign(0.041) TCGA-78-7159-01 4 96075882 96075882 G T BMPR1B 3'UTR 0.17 TCGA-78-7159-01 5 112418664 112418664 C G MCC Missense_Mutation p.Q559H 0.37 tolerated(0.09) probably_damaging(0.989) TCGA-78-7159-01 5 118440930 118440930 A G DMXL1 Missense_Mutation p.H114R 0.30 tolerated(0.45) benign(0.002) TCGA-78-7159-01 5 127488418 127488418 A T SLC12A2 Missense_Mutation p.T762S 0.16 deleterious(0.01) probably_damaging(0.961) TCGA-78-7159-01 5 132228047 132228047 C A AFF4 Missense_Mutation p.A816S 0.24 tolerated(0.17) benign(0.007) TCGA-78-7159-01 5 140255495 140255495 G A PCDHA12 Silent p.A146A 0.24 TCGA-78-7159-01 5 140562299 140562299 G A PCDHB16 Silent p.G55G 0.47 TCGA-78-7159-01 5 140590379 140590379 G T PCDHB12 Missense_Mutation p.D634Y 0.13 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-78-7159-01 5 148747747 148747747 G T PCYOX1L Missense_Mutation p.G339C 0.25 deleterious(0) probably_damaging(1) TCGA-78-7159-01 5 150138566 150138566 G T DCTN4 5'UTR 0.09 TCGA-78-7159-01 5 150138567 150138567 A T DCTN4 5'UTR 0.09 TCGA-78-7159-01 5 150928985 150928985 G T FAT2 Missense_Mutation p.R1554S 0.21 benign(0.004) TCGA-78-7159-01 5 150947298 150947298 G A FAT2 Missense_Mutation p.P399S 0.39 benign(0.013) TCGA-78-7159-01 5 167645193 167645193 G T TENM2 Nonsense_Mutation p.E1433* 0.17 TCGA-78-7159-01 5 176471400 176471400 G T ZNF346 Missense_Mutation p.R128I 0.32 tolerated(0.18) possibly_damaging(0.885) TCGA-78-7159-01 5 21842393 21842393 C A CDH12 Nonsense_Mutation p.E231* 0.41 TCGA-78-7159-01 5 35871289 35871289 C A IL7R Missense_Mutation p.Q171K 0.26 tolerated(0.09) benign(0.023) TCGA-78-7159-01 6 128403661 128403661 C A PTPRK Silent p.T566T 0.38 TCGA-78-7159-01 6 152469466 152469466 T C SYNE1 Silent p.E8230E 0.38 TCGA-78-7159-01 6 158902193 158902193 T C TULP4 Missense_Mutation p.V453A 0.14 tolerated(0.32) benign(0.113) TCGA-78-7159-01 6 160953593 160953593 C A LPA Missense_Mutation p.E1977D 0.29 deleterious(0.03) benign(0.06) TCGA-78-7159-01 6 162683557 162683557 C G PARK2 Missense_Mutation p.A138P 0.17 tolerated(0.09) benign(0.01) TCGA-78-7159-01 6 168276054 168276054 G T MLLT4 Missense_Mutation p.M206I 0.26 deleterious(0.01) benign(0.192) TCGA-78-7159-01 6 22569783 22569783 G T HDGFL1 5'Flank 0.36 TCGA-78-7159-01 6 31545256 31545256 C A TNF Missense_Mutation p.P215H 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-78-7159-01 6 51935228 51935228 C A PKHD1 Missense_Mutation p.S228I 0.45 deleterious(0) probably_damaging(0.999) TCGA-78-7159-01 6 55623883 55623883 C A BMP5 Missense_Mutation p.A379S 0.32 deleterious(0) probably_damaging(1) TCGA-78-7159-01 6 56031702 56031702 A T COL21A1 Splice_Site p.X426_splice 0.24 TCGA-78-7159-01 6 57512605 57512605 A G PRIM2 3'UTR 0.10 TCGA-78-7159-01 6 66112430 66112430 C G EYS Missense_Mutation p.E375D 0.33 tolerated(0.59) benign(0.064) TCGA-78-7159-01 6 70642738 70642738 G A COL19A1 Missense_Mutation p.E244K 0.29 deleterious(0.01) unknown(0) TCGA-78-7159-01 6 73904664 73904664 A T KCNQ5 Missense_Mutation p.S795C 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.711) TCGA-78-7159-01 6 99374671 99374671 T A FBXL4 Missense_Mutation p.Y65F 0.28 deleterious(0) probably_damaging(0.993) TCGA-78-7159-01 6 99374672 99374672 A T FBXL4 Missense_Mutation p.Y65N 0.27 deleterious(0) probably_damaging(0.998) TCGA-78-7159-01 6 99374673 99374673 A G FBXL4 Silent p.H64H 0.28 TCGA-78-7159-01 7 100452363 100452363 G T SLC12A9 Silent p.G101G 0.36 TCGA-78-7159-01 7 100679543 100679543 G A MUC17 Missense_Mutation p.A1616T 0.05 unknown(0) TCGA-78-7159-01 7 101266322 101266322 C T MYL10 Missense_Mutation p.G102S 0.38 deleterious(0) probably_damaging(1) TCGA-78-7159-01 7 107638920 107638920 G T LAMB1 Missense_Mutation p.F77L 0.18 deleterious(0) possibly_damaging(0.823) TCGA-78-7159-01 7 136699633 136699633 C A CHRM2 Silent p.S7S 0.38 TCGA-78-7159-01 7 142364605 142364605 T A TRBV24-1 Silent p.S80S 0.07 TCGA-78-7159-01 7 27213842 27213842 A G HOXA10 Silent p.S28S 0.22 TCGA-78-7159-01 7 37780251 37780251 C A GPR141 Missense_Mutation p.P86T 0.32 tolerated(0.44) benign(0.025) TCGA-78-7159-01 7 37780252 37780252 C A GPR141 Missense_Mutation p.P86H 0.33 tolerated(0.55) benign(0.119) TCGA-78-7159-01 7 38725631 38725631 G T FAM183B 5'UTR 0.20 TCGA-78-7159-01 7 44146278 44146278 G T AEBP1 Missense_Mutation p.K129N 0.38 deleterious_low_confidence(0) unknown(0) TCGA-78-7159-01 7 55990971 55990971 A C MRPS17 Silent p.L55L 0.16 TCGA-78-7159-01 7 69583191 69583191 G A AUTS2 Missense_Mutation p.R199Q 0.09 deleterious(0.03) probably_damaging(0.947) TCGA-78-7159-01 7 780463 780463 G T HEATR2 Missense_Mutation p.R263L 0.26 tolerated(0.39) benign(0.006) TCGA-78-7159-01 7 87533696 87533696 T C DBF4 Silent p.F338F 0.23 TCGA-78-7159-01 7 94928255 94928255 G A PON1 3'UTR 0.14 TCGA-78-7159-01 8 100866131 100866131 G T VPS13B Missense_Mutation p.R3530L 0.21 deleterious(0.01) benign(0.25) TCGA-78-7159-01 8 10285889 10285889 G C MSRA 3'UTR 0.50 TCGA-78-7159-01 8 103309166 103309166 C A UBR5 Missense_Mutation p.C1207F 0.59 deleterious(0) probably_damaging(0.996) TCGA-78-7159-01 8 11189615 11189615 G T SLC35G5 Missense_Mutation p.G334W 0.36 deleterious(0) possibly_damaging(0.702) TCGA-78-7159-01 8 113697849 113697849 C A CSMD3 Silent p.G756G 0.61 TCGA-78-7159-01 8 116631944 116631944 T C TRPS1 Silent p.S127S 0.16 TCGA-78-7159-01 8 118165318 118165318 G T SLC30A8 Missense_Mutation p.W136L 0.10 deleterious(0) possibly_damaging(0.892) TCGA-78-7159-01 8 125115475 125115475 G C FER1L6 Missense_Mutation p.E1738D 0.55 tolerated(0.43) benign(0.005) TCGA-78-7159-01 8 131922105 131922105 G C ADCY8 Missense_Mutation p.R497G 0.60 deleterious(0) probably_damaging(0.995) TCGA-78-7159-01 8 140743352 140743352 C G TRAPPC9 Missense_Mutation p.W1231C 0.21 deleterious(0) probably_damaging(0.99) TCGA-78-7159-01 8 144642896 144642896 G A GSDMD Silent p.R178R 0.19 TCGA-78-7159-01 8 51363114 51363114 A T SNTG1 Splice_Site p.X93_splice 0.53 TCGA-78-7159-01 8 71646419 71646419 G T XKR9 Missense_Mutation p.R294S 0.16 tolerated(0.16) benign(0.175) TCGA-78-7159-01 8 72984028 72984028 C A TRPA1 Missense_Mutation p.M62I 0.51 tolerated(0.22) benign(0.001) TCGA-78-7159-01 8 77764905 77764905 T C ZFHX4 Silent p.F1916F 0.25 TCGA-78-7159-01 8 89198727 89198727 G T MMP16 Missense_Mutation p.Q128K 0.16 tolerated(0.27) benign(0.004) TCGA-78-7159-01 9 107379838 107379838 G T OR13C9 Silent p.I216I 0.14 TCGA-78-7159-01 9 108484812 108484812 T A TMEM38B Intron 0.36 TCGA-78-7159-01 9 111659270 111659270 T C IKBKAP Silent p.E850E 0.35 TCGA-78-7159-01 9 125438077 125438077 C A OR1L3 Silent p.I223I 0.44 TCGA-78-7159-01 9 37746517 37746517 C G FRMPD1 Missense_Mutation p.H1496Q 0.27 tolerated(0.11) possibly_damaging(0.634) TCGA-78-7159-01 X 105153581 105153581 G C NRK Missense_Mutation p.A651P 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-78-7159-01 X 105450147 105450147 C A MUM1L1 Nonsense_Mutation p.S241* 0.26 TCGA-78-7159-01 X 108696812 108696812 G T GUCY2F Missense_Mutation p.P437T 0.21 tolerated(0.2) benign(0.045) TCGA-78-7159-01 X 11161844 11161844 C A ARHGAP6 Intron 0.40 TCGA-78-7159-01 X 119059199 119059199 C A NKAP Missense_Mutation p.G411V 0.17 deleterious(0) unknown(0) TCGA-78-7159-01 X 12838875 12838875 A G PRPS2 Missense_Mutation p.N276D 0.41 tolerated(0.24) probably_damaging(1) TCGA-78-7159-01 X 129200733 129200733 G T ELF4 Missense_Mutation p.P652H 0.13 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-78-7159-01 X 132161952 132161952 G T USP26 Missense_Mutation p.D99E 0.17 deleterious(0.03) possibly_damaging(0.52) TCGA-78-7159-01 X 134680705 134680705 G T DDX26B Missense_Mutation p.A170S 0.19 tolerated(0.63) benign(0.429) TCGA-78-7159-01 X 135291445 135291445 T A FHL1 Silent p.A244A 0.09 TCGA-78-7159-01 X 142795344 142795344 C G SPANXN2 Missense_Mutation p.D112H 0.11 deleterious(0) unknown(0) TCGA-78-7159-01 X 147733577 147733577 A G AFF2 Silent p.Q35Q 0.24 TCGA-78-7159-01 X 147743554 147743554 G T AFF2 Silent p.V102V 0.41 TCGA-78-7159-01 X 150348412 150348412 C A GPR50 Silent p.I119I 0.36 TCGA-78-7159-01 X 153593758 153593758 C A FLNA Missense_Mutation p.G509V 0.19 deleterious(0.01) benign(0.301) TCGA-78-7159-01 X 25031161 25031161 G T ARX Missense_Mutation p.S317R 0.39 deleterious(0.03) possibly_damaging(0.694) TCGA-78-7159-01 X 27840205 27840205 A T MAGEB10 Missense_Mutation p.Q261L 0.11 deleterious(0.01) possibly_damaging(0.456) TCGA-78-7159-01 X 2936618 2936618 G A ARSH Missense_Mutation p.V270I 0.40 deleterious(0.04) benign(0.386) TCGA-78-7159-01 X 32536160 32536160 C A DMD Nonsense_Mutation p.E753* 0.19 TCGA-78-7159-01 X 47426120 47426120 T A ARAF Missense_Mutation p.S214T 0.13 deleterious(0) benign(0.22) TCGA-78-7159-01 X 64744855 64744855 T A LAS1L Silent p.I344I 0.21 TCGA-78-7159-01 X 67939098 67939098 C A STARD8 Missense_Mutation p.H583N 0.34 tolerated(0.08) benign(0.142) TCGA-78-7159-01 X 73811943 73811943 G T RLIM Missense_Mutation p.Q403K 0.13 deleterious(0.02) unknown(0) TCGA-78-7159-01 X 76938620 76938620 T C ATRX Missense_Mutation p.N710D 0.03 benign(0.075) TCGA-78-7159-01 X 77913735 77913735 G T ZCCHC5 Silent p.P61P 0.24 TCGA-78-7159-01 X 8507735 8507735 G A KAL1 Silent p.T473T 0.09 TCGA-78-7159-01 X 99925986 99925986 C A SRPX2 3'UTR 0.35 TCGA-78-7160-01 10 14939251 14939251 A G SUV39H2 Missense_Mutation p.D195G 0.09 deleterious(0.02) benign(0.106) TCGA-78-7160-01 10 33502172 33502172 G C NRP1 Intron 0.20 TCGA-78-7160-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.21 deleterious(0) benign(0.361) TCGA-78-7160-01 12 49166147 49166147 C A ADCY6 Silent p.A906A 0.09 TCGA-78-7160-01 12 54369022 54369022 T A HOXC11 Missense_Mutation p.L247Q 0.14 deleterious(0) probably_damaging(0.989) TCGA-78-7160-01 13 46276977 46276977 T C SPERT Missense_Mutation p.V48A 0.23 tolerated_low_confidence(0.07) benign(0.173) TCGA-78-7160-01 14 22102940 22102940 C A OR10G2 Missense_Mutation p.G20V 0.10 deleterious(0) probably_damaging(1) TCGA-78-7160-01 14 24108035 24108035 G C DHRS2 Splice_Site 0.09 TCGA-78-7160-01 14 71555974 71555974 T A PCNX Missense_Mutation p.I1835N 0.08 deleterious(0.03) possibly_damaging(0.609) TCGA-78-7160-01 16 16208863 16208863 T C ABCC1 Missense_Mutation p.V1107A 0.11 deleterious(0.01) benign(0.142) TCGA-78-7160-01 16 16248520 16248520 C T ABCC6 Silent p.L1391L 0.11 TCGA-78-7160-01 17 10366910 10366910 G A MYH4 Silent p.F233F 0.13 TCGA-78-7160-01 17 34858967 34858967 C A MYO19 Missense_Mutation p.D684Y 0.08 tolerated(0.13) benign(0) TCGA-78-7160-01 17 48542651 48542651 C T CHAD Intron 0.10 TCGA-78-7160-01 19 1207065 1207065 G - STK11 Frame_Shift_Del p.D53Tfs*11 0.14 TCGA-78-7160-01 19 22171640 22171640 C T ZNF208 Silent p.Q25Q 0.06 TCGA-78-7160-01 19 38056962 38056962 G C ZNF571 Nonsense_Mutation p.S123* 0.10 TCGA-78-7160-01 19 50360330 50360330 C G PTOV1 Silent p.P219P 0.12 TCGA-78-7160-01 19 55177869 55177869 G A LILRB4 Missense_Mutation p.V324I 0.10 tolerated(0.55) benign(0.001) TCGA-78-7160-01 1 111145958 111145958 T C KCNA2 Missense_Mutation p.T483A 0.26 tolerated_low_confidence(0.52) benign(0.108) TCGA-78-7160-01 1 156814587 156814587 T G INSRR Missense_Mutation p.K829T 0.06 tolerated(0.24) benign(0.213) TCGA-78-7160-01 1 157490931 157490931 C T FCRL5 Silent p.S797S 0.12 TCGA-78-7160-01 1 158614140 158614140 C T SPTA1 Missense_Mutation p.R1414H 0.06 deleterious(0) probably_damaging(0.999) TCGA-78-7160-01 1 158614141 158614141 G T SPTA1 Missense_Mutation p.R1414S 0.06 deleterious(0) probably_damaging(0.999) TCGA-78-7160-01 1 178790800 178790800 A G RALGPS2 Silent p.L147L 0.30 TCGA-78-7160-01 1 70482195 70482195 C A LRRC7 Missense_Mutation p.A395D 0.14 deleterious(0) probably_damaging(0.976) TCGA-78-7160-01 20 41101003 41101003 G C PTPRT Silent p.G451G 0.05 TCGA-78-7160-01 20 62236177 62236177 C G GMEB2 Missense_Mutation p.D50H 0.05 deleterious(0.02) benign(0.376) TCGA-78-7160-01 21 31802689 31802689 C T KRTAP13-4 Silent p.S32S 0.10 TCGA-78-7160-01 21 46226945 46226945 T C SUMO3 Missense_Mutation p.E78G 0.05 deleterious(0.03) possibly_damaging(0.658) TCGA-78-7160-01 22 20102885 20102885 T A TRMT2A Missense_Mutation p.Y265F 0.17 deleterious(0.01) benign(0.026) TCGA-78-7160-01 2 179315119 179315119 C T PRKRA Missense_Mutation p.A29T 0.05 tolerated(0.15) benign(0.141) TCGA-78-7160-01 2 206364756 206364756 G T PARD3B Splice_Site p.X998_splice 0.16 TCGA-78-7160-01 2 234545239 234545239 A G UGT1A10 Missense_Mutation p.E24G 0.13 deleterious(0.03) benign(0.062) TCGA-78-7160-01 3 111686558 111686558 G A PHLDB2 Missense_Mutation p.E1068K 0.20 deleterious(0) possibly_damaging(0.686) TCGA-78-7160-01 3 38104070 38104070 A G DLEC1 Splice_Site p.X292_splice 0.22 TCGA-78-7160-01 4 69519925 69519925 G T UGT2B15 Silent p.I381I 0.06 TCGA-78-7160-01 4 89020602 89020602 T A ABCG2 Splice_Site p.X456_splice 0.12 TCGA-78-7160-01 5 180662018 180662018 G T TRIM41 3'UTR 0.09 TCGA-78-7160-01 6 129470208 129470208 G C LAMA2 Missense_Mutation p.A332P 0.05 tolerated(1) probably_damaging(0.99) TCGA-78-7160-01 6 168910629 168910629 G T SMOC2 Missense_Mutation p.C40F 0.08 deleterious(0) probably_damaging(0.999) TCGA-78-7160-01 6 26509081 26509081 C A BTN1A1 Silent p.R420R 0.21 TCGA-78-7160-01 7 105195643 105195643 C G RINT1 Nonsense_Mutation p.S547* 0.05 TCGA-78-7160-01 7 142625303 142625303 C T TRPV5 Silent p.R263R 0.15 TCGA-78-7160-01 7 42005257 42005257 G A GLI3 Silent p.H1138H 0.08 TCGA-78-7160-01 7 82764796 82764796 T C PCLO Silent p.P690P 0.22 TCGA-78-7160-01 8 133645019 133645019 T C LRRC6 Missense_Mutation p.D207G 0.10 deleterious(0.04) benign(0.078) TCGA-78-7160-01 8 145006974 145006974 G A PLEC Missense_Mutation p.A712V 0.27 unknown(0) TCGA-78-7160-01 9 100105801 100105801 A G CCDC180 Silent p.E862E 0.22 TCGA-78-7160-01 9 125613379 125613379 C G RC3H2 Missense_Mutation p.G1121R 0.12 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-78-7160-01 9 27949218 27949218 G T LINGO2 Silent p.I484I 0.14 TCGA-78-7160-01 9 75387391 75387391 G A TMC1 Nonsense_Mutation p.W268* 0.05 TCGA-78-7160-01 X 101970715 101970715 C T GPRASP2 Silent p.P306P 0.28 TCGA-78-7160-01 X 128902344 128902344 G A XPNPEP2 Silent p.E636E 0.20 TCGA-78-7160-01 X 153134106 153134106 C T L1CAM Missense_Mutation p.D486N 0.21 tolerated(0.59) possibly_damaging(0.639) TCGA-78-7160-01 X 49853490 49853490 G C CLCN5 Missense_Mutation p.D565H 0.11 deleterious(0.04) probably_damaging(1) TCGA-78-7160-01 X 54107840 54107840 C A FAM120C Missense_Mutation p.V965L 0.27 deleterious(0) probably_damaging(0.99) TCGA-78-7160-01 X 84510318 84510318 G C ZNF711 Missense_Mutation p.V45L 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.688) TCGA-78-7161-01 10 134017425 134017425 C T DPYSL4 Silent p.L541L 0.66 TCGA-78-7161-01 10 15326031 15326031 G A FAM171A1 Silent p.F57F 0.35 TCGA-78-7161-01 10 15655727 15655727 C T ITGA8 Silent p.L495L 0.45 TCGA-78-7161-01 10 18292274 18292274 C T SLC39A12 Missense_Mutation p.S645F 0.31 deleterious(0) probably_damaging(0.995) TCGA-78-7161-01 10 32328341 32328341 C G KIF5B Missense_Mutation p.E103Q 0.18 tolerated(1) benign(0.179) TCGA-78-7161-01 10 48438671 48438671 G T GDF10 Missense_Mutation p.P14T 0.47 tolerated_low_confidence(0.62) benign(0.011) TCGA-78-7161-01 10 61112030 61112030 C A FAM13C Missense_Mutation p.Q108H 0.67 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-78-7161-01 10 73468898 73468898 C A C10orf105 3'Flank 0.63 TCGA-78-7161-01 11 108384059 108384059 T A EXPH5 Missense_Mutation p.E725D 0.10 tolerated(0.19) probably_damaging(0.986) TCGA-78-7161-01 11 123485517 123485517 C A GRAMD1B Silent p.S621S 0.77 TCGA-78-7161-01 11 17464360 17464360 C A ABCC8 Missense_Mutation p.A513S 0.43 deleterious(0.01) probably_damaging(0.989) TCGA-78-7161-01 11 17981157 17981157 G A SERGEF Nonsense_Mutation p.R291* 0.14 TCGA-78-7161-01 11 18306904 18306904 G A HPS5 Silent p.C980C 0.69 TCGA-78-7161-01 11 21555938 21555938 A C NELL1 Missense_Mutation p.E555A 0.22 tolerated(0.51) benign(0.145) TCGA-78-7161-01 11 26730928 26730928 T A SLC5A12 Splice_Site p.X153_splice 0.22 TCGA-78-7161-01 11 34139802 34139802 C T NAT10 Silent p.S211S 0.47 TCGA-78-7161-01 11 55655715 55655715 A G TRIM51 Missense_Mutation p.K239E 0.47 deleterious(0) possibly_damaging(0.792) TCGA-78-7161-01 11 56113597 56113597 G A OR8K1 Missense_Mutation p.G28E 0.15 tolerated_low_confidence(1) benign(0) TCGA-78-7161-01 11 56345063 56345063 C A OR5M10 Missense_Mutation p.M45I 0.74 tolerated(0.09) benign(0.003) TCGA-78-7161-01 11 59603316 59603316 G T GIF Silent p.V346V 0.44 TCGA-78-7161-01 11 6640117 6640117 C G TPP1 Missense_Mutation p.R40P 0.49 deleterious(0.01) benign(0.033) TCGA-78-7161-01 11 7631629 7631629 G T PPFIBP2 Missense_Mutation p.Q198H 0.52 tolerated(0.46) probably_damaging(0.981) TCGA-78-7161-01 11 77911202 77911202 C T USP35 Silent p.P320P 0.11 TCGA-78-7161-01 11 94533220 94533220 C T AMOTL1 Silent p.F288F 0.10 TCGA-78-7161-01 11 94533394 94533394 C G AMOTL1 Silent p.V346V 0.13 TCGA-78-7161-01 11 94533413 94533413 C G AMOTL1 Missense_Mutation p.Q353E 0.12 tolerated(0.06) benign(0.2) TCGA-78-7161-01 12 109898546 109898546 C A KCTD10 Silent p.G94G 0.17 TCGA-78-7161-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.43 deleterious(0) possibly_damaging(0.479) TCGA-78-7161-01 12 2930756 2930756 C G ITFG2 Missense_Mutation p.L281V 0.34 deleterious(0) probably_damaging(0.998) TCGA-78-7161-01 12 2930955 2930955 C T ITFG2 Silent p.V315V 0.37 TCGA-78-7161-01 12 3129844 3129844 C T TEAD4 Missense_Mutation p.P210S 0.61 tolerated(0.53) benign(0.002) TCGA-78-7161-01 12 43846406 43846406 C A ADAMTS20 Missense_Mutation p.R618L 0.41 deleterious(0) probably_damaging(1) TCGA-78-7161-01 12 48369227 48369227 G A COL2A1 Silent p.A1253A 0.20 TCGA-78-7161-01 12 53216924 53216924 G T KRT79 Missense_Mutation p.L415M 0.44 deleterious(0.01) probably_damaging(1) TCGA-78-7161-01 12 56498499 56498499 G A PA2G4 5'UTR 0.21 TCGA-78-7161-01 12 57969439 57969439 G T KIF5A Missense_Mutation p.R641L 0.14 deleterious(0.02) benign(0.265) TCGA-78-7161-01 13 101277801 101277801 G C TMTC4 Missense_Mutation p.N608K 0.45 deleterious(0) probably_damaging(0.949) TCGA-78-7161-01 13 20426052 20426052 T C ZMYM5 Missense_Mutation p.E90G 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.859) TCGA-78-7161-01 13 53421573 53421573 G T PCDH8 Silent p.P333P 0.56 TCGA-78-7161-01 13 99489762 99489762 T G DOCK9 Missense_Mutation p.T1411P 0.36 deleterious(0.02) benign(0.011) TCGA-78-7161-01 14 100129272 100129272 G A HHIPL1 Missense_Mutation p.C521Y 0.08 deleterious(0.01) probably_damaging(1) TCGA-78-7161-01 14 102822165 102822165 C A CINP Silent p.L97L 0.60 TCGA-78-7161-01 14 104129247 104129247 C T KLC1 Silent p.I260I 0.14 TCGA-78-7161-01 14 104206652 104206652 C T PPP1R13B Missense_Mutation p.A701T 0.05 deleterious(0) probably_damaging(0.999) TCGA-78-7161-01 14 19553788 19553788 C T POTEG Silent p.D124D 0.10 TCGA-78-7161-01 14 20295901 20295901 C A OR4N2 Silent p.I98I 0.63 TCGA-78-7161-01 14 21238816 21238816 G C EDDM3B 3'UTR 0.30 TCGA-78-7161-01 14 52169297 52169297 G C FRMD6 Missense_Mutation p.R121T 0.21 deleterious(0) benign(0.267) TCGA-78-7161-01 14 58965518 58965518 G T KIAA0586 Silent p.V1389V 0.34 TCGA-78-7161-01 14 70634240 70634240 G C SLC8A3 Missense_Mutation p.N300K 0.32 tolerated(0.79) benign(0.017) TCGA-78-7161-01 15 100332640 100332640 G A AC090825.1 3'Flank 0.20 TCGA-78-7161-01 15 24921213 24921213 G T NPAP1 Missense_Mutation p.A67S 0.30 tolerated(0.27) possibly_damaging(0.709) TCGA-78-7161-01 15 40586571 40586571 C A PLCB2 Missense_Mutation p.G653C 0.15 deleterious(0) probably_damaging(1) TCGA-78-7161-01 15 43632517 43632517 C A ADAL Missense_Mutation p.L104I 0.35 deleterious(0) probably_damaging(0.994) TCGA-78-7161-01 15 50545802 50545802 G T HDC Missense_Mutation p.P261H 0.37 deleterious(0.01) probably_damaging(1) TCGA-78-7161-01 15 75045584 75045584 T C CYP1A2 Missense_Mutation p.V409A 0.09 deleterious(0) possibly_damaging(0.577) TCGA-78-7161-01 15 99672890 99672890 C - SYNM Frame_Shift_Del p.A1441Efs*7 0.32 TCGA-78-7161-01 16 50830353 50830353 A G CYLD Silent p.A935A 0.37 TCGA-78-7161-01 16 71748668 71748668 T G PHLPP2 Missense_Mutation p.N11H 0.49 tolerated_low_confidence(0.09) benign(0.002) TCGA-78-7161-01 17 21731186 21731186 A G UBBP4 Missense_Mutation p.K163R 0.10 deleterious(0.02) benign(0.353) TCGA-78-7161-01 17 35640264 35640264 G T ACACA Silent p.R172R 0.23 TCGA-78-7161-01 17 48195572 48195572 C T SAMD14 Missense_Mutation p.A55T 0.42 deleterious(0.05) benign(0.009) TCGA-78-7161-01 17 55083594 55083594 T C SCPEP1 Nonstop_Mutation p.*453Qext*7 0.20 TCGA-78-7161-01 17 76521120 76521120 G T DNAH17 Missense_Mutation p.L1275M 0.14 possibly_damaging(0.793) TCGA-78-7161-01 17 80037035 80037035 C - FASN Frame_Shift_Del p.S2507Tfs*33 0.13 TCGA-78-7161-01 18 28588372 28588372 A T DSC3 Missense_Mutation p.H461Q 0.50 tolerated(0.15) benign(0.018) TCGA-78-7161-01 18 29046694 29046694 T G DSG3 Missense_Mutation p.V538G 0.18 tolerated(0.16) benign(0.046) TCGA-78-7161-01 18 2922113 2922113 G A LPIN2 Silent p.D753D 0.12 TCGA-78-7161-01 18 30349741 30349741 G T KLHL14 Missense_Mutation p.P272T 0.26 tolerated(0.42) possibly_damaging(0.848) TCGA-78-7161-01 18 31326095 31326095 G A ASXL3 Missense_Mutation p.E2095K 0.54 probably_damaging(0.996) TCGA-78-7161-01 18 31326451 31326451 C T ASXL3 Silent p.C2213C 0.54 TCGA-78-7161-01 18 31326453 31326453 C T ASXL3 Missense_Mutation p.S2214F 0.51 probably_damaging(0.999) TCGA-78-7161-01 19 1220370 1220370 A T STK11 Splice_Site p.X155_splice 0.94 TCGA-78-7161-01 19 14569148 14569148 G C PKN1 Silent p.V466V 0.34 TCGA-78-7161-01 19 14569149 14569149 C T PKN1 Nonsense_Mutation p.Q467* 0.32 TCGA-78-7161-01 19 22363718 22363718 G T ZNF676 Silent p.T267T 0.74 TCGA-78-7161-01 19 22379435 22379435 T A ZNF676 Translation_Start_Site p.M1? 0.74 deleterious(0.03) possibly_damaging(0.456) TCGA-78-7161-01 19 39292738 39292738 C T LGALS4 Missense_Mutation p.R240H 0.52 deleterious(0) probably_damaging(0.998) TCGA-78-7161-01 19 39911746 39911746 A T PLEKHG2 Silent p.P493P 0.55 TCGA-78-7161-01 19 43439788 43439788 G T PSG7 Silent p.I66I 0.58 TCGA-78-7161-01 19 43683299 43683299 G T PSG5 Intron 0.44 TCGA-78-7161-01 19 44661481 44661481 C T ZNF234 Missense_Mutation p.R438C 0.13 deleterious(0.03) probably_damaging(0.932) TCGA-78-7161-01 19 48551524 48551524 A G PLA2G4C 3'UTR 0.50 TCGA-78-7161-01 19 52537513 52537513 A G ZNF432 Silent p.I473I 0.22 TCGA-78-7161-01 19 52826033 52826033 T G ZNF480 Silent p.P510P 0.23 TCGA-78-7161-01 19 53761983 53761983 T A VN1R2 Missense_Mutation p.Y119N 0.61 tolerated(0.21) possibly_damaging(0.515) TCGA-78-7161-01 19 57175427 57175427 G A ZNF835 Silent p.H380H 0.11 TCGA-78-7161-01 19 9061703 9061703 C A MUC16 Missense_Mutation p.E8581D 0.32 unknown(0) TCGA-78-7161-01 19 9082974 9082974 G T MUC16 Silent p.A2947A 0.20 TCGA-78-7161-01 1 110300959 110300959 G T EPS8L3 Silent p.P233P 0.31 TCGA-78-7161-01 1 152733006 152733006 T A KPRP Silent p.I314I 0.60 TCGA-78-7161-01 1 152785280 152785280 A T LCE1B 3'UTR 0.51 TCGA-78-7161-01 1 153122499 153122499 G T SPRR2G Missense_Mutation p.P30T 0.46 unknown(0) TCGA-78-7161-01 1 154516441 154516441 G T TDRD10 Missense_Mutation p.G169V 0.35 deleterious(0.02) probably_damaging(0.984) TCGA-78-7161-01 1 156268904 156268904 C T VHLL Missense_Mutation p.C26Y 0.35 tolerated_low_confidence(0.6) benign(0.104) TCGA-78-7161-01 1 19062154 19062154 C T PAX7 Missense_Mutation p.A395V 0.26 deleterious_low_confidence(0.01) benign(0.359) TCGA-78-7161-01 1 215822056 215822056 G T USH2A Missense_Mutation p.T4799N 0.22 possibly_damaging(0.901) TCGA-78-7161-01 1 22211527 22211527 C A HSPG2 Missense_Mutation p.G445V 0.42 probably_damaging(0.999) TCGA-78-7161-01 1 22986050 22986050 C A C1QB Missense_Mutation p.P34H 0.30 tolerated(0.55) benign(0.004) TCGA-78-7161-01 1 22986051 22986051 C A C1QB Silent p.P34P 0.30 TCGA-78-7161-01 1 237774190 237774190 G T RYR2 Missense_Mutation p.L1604F 0.24 probably_damaging(0.983) TCGA-78-7161-01 1 238053218 238053218 G T ZP4 Missense_Mutation p.H117N 0.63 tolerated(0.26) benign(0.01) TCGA-78-7161-01 1 248128815 248128815 T G OR2AK2 Missense_Mutation p.I61S 0.39 deleterious(0) benign(0.206) TCGA-78-7161-01 1 248201900 248201900 G A OR2L2 Missense_Mutation p.G111R 0.61 tolerated(0.21) possibly_damaging(0.474) TCGA-78-7161-01 1 248436905 248436905 A T OR2T33 Missense_Mutation p.L71Q 0.06 deleterious(0.01) probably_damaging(0.95) TCGA-78-7161-01 1 34006140 34006140 G T CSMD2 Missense_Mutation p.L3062M 0.48 tolerated(0.12) possibly_damaging(0.756) TCGA-78-7161-01 1 40312906 40312906 T G TRIT1 Missense_Mutation p.N331T 0.31 deleterious(0) probably_damaging(0.989) TCGA-78-7161-01 1 40701680 40701680 C T RLF Missense_Mutation p.P436S 0.51 deleterious(0.01) probably_damaging(1) TCGA-78-7161-01 1 62995065 62995065 T A DOCK7 Missense_Mutation p.S1191C 0.47 tolerated(0.15) benign(0.045) TCGA-78-7161-01 1 67327898 67327898 G A WDR78 Missense_Mutation p.S343L 0.09 tolerated(0.08) benign(0.044) TCGA-78-7161-01 1 70397207 70397207 C A LRRC7 Missense_Mutation p.A184D 0.47 deleterious(0.03) benign(0.322) TCGA-78-7161-01 1 70504740 70504740 T A LRRC7 Missense_Mutation p.V1040E 0.49 tolerated(0.09) possibly_damaging(0.634) TCGA-78-7161-01 1 70541966 70541966 T C LRRC7 Silent p.D1441D 0.14 TCGA-78-7161-01 1 90398902 90398902 G C LRRC8D Missense_Mutation p.G92A 0.09 tolerated(0.82) benign(0) TCGA-78-7161-01 1 9640262 9640262 G A SLC25A33 Missense_Mutation p.G245S 0.74 tolerated(0.57) probably_damaging(1) TCGA-78-7161-01 20 30584492 30584492 C - XKR7 Frame_Shift_Del p.Y324* 0.21 TCGA-78-7161-01 20 33735117 33735117 A G EDEM2 5'UTR 0.30 TCGA-78-7161-01 20 36869386 36869386 A T KIAA1755 Missense_Mutation p.C383S 0.56 tolerated(0.38) benign(0.075) TCGA-78-7161-01 20 44050087 44050087 G T PIGT Silent p.G366G 0.42 TCGA-78-7161-01 20 57568155 57568155 G A NELFCD Silent p.A462A 0.18 TCGA-78-7161-01 21 47808656 47808656 G T PCNT Splice_Site p.X1155_splice 0.42 TCGA-78-7161-01 22 32650132 32650132 C A SLC5A4 Missense_Mutation p.W68C 0.21 deleterious(0.02) benign(0.25) TCGA-78-7161-01 22 32650133 32650133 C A SLC5A4 Missense_Mutation p.W68L 0.19 deleterious(0.04) possibly_damaging(0.619) TCGA-78-7161-01 22 50899610 50899610 T A SBF1 Missense_Mutation p.Q982L 0.18 deleterious(0) possibly_damaging(0.492) TCGA-78-7161-01 2 101089998 101089998 T G NMS Silent p.P60P 0.22 TCGA-78-7161-01 2 103149083 103149083 C A SLC9A4 Missense_Mutation p.T778K 0.68 deleterious(0.05) benign(0.022) TCGA-78-7161-01 2 107007448 107007448 T A PLGLA RNA 0.50 TCGA-78-7161-01 2 108478101 108478101 G T RGPD4 Nonsense_Mutation p.E704* 0.37 TCGA-78-7161-01 2 140992400 140992400 C T LRP1B Silent p.P4538P 0.25 TCGA-78-7161-01 2 149227121 149227121 A T MBD5 Missense_Mutation p.S537C 0.36 deleterious(0.01) possibly_damaging(0.843) TCGA-78-7161-01 2 152548676 152548676 C G NEB Missense_Mutation p.R668T 0.41 benign(0.292) TCGA-78-7161-01 2 152582033 152582033 T C NEB Silent p.P112P 0.34 TCGA-78-7161-01 2 17836533 17836533 C G VSNL1 Missense_Mutation p.R150G 0.28 deleterious(0) probably_damaging(0.953) TCGA-78-7161-01 2 17941198 17941198 G T GEN1 Intron 0.39 TCGA-78-7161-01 2 179474204 179474204 G T TTN Missense_Mutation p.T17278N 0.42 TCGA-78-7161-01 2 189855031 189855031 A T COL3A1 Splice_Site p.X249_splice 0.40 TCGA-78-7161-01 2 189855033 189855033 G T COL3A1 Missense_Mutation p.G249C 0.36 unknown(0) TCGA-78-7161-01 2 241656667 241656667 C G KIF1A 3'UTR 0.33 TCGA-78-7161-01 2 32706447 32706447 G T BIRC6 Missense_Mutation p.D2490Y 0.35 probably_damaging(0.997) TCGA-78-7161-01 2 73268002 73268002 G A SFXN5 Missense_Mutation p.P77L 0.10 tolerated(0.07) benign(0.04) TCGA-78-7161-01 2 73681086 73681086 T G ALMS1 Missense_Mutation p.S2477A 0.20 probably_damaging(0.997) TCGA-78-7161-01 2 74441254 74441254 G A MTHFD2 Missense_Mutation p.G313D 0.20 deleterious(0) probably_damaging(0.987) TCGA-78-7161-01 2 80773043 80773043 C A CTNNA2 Silent p.A465A 0.41 TCGA-78-7161-01 3 120500000 120500000 G C GTF2E1 Missense_Mutation p.A335P 0.22 tolerated(0.1) benign(0.005) TCGA-78-7161-01 3 142467281 142467281 A G TRPC1 Missense_Mutation p.K204R 0.45 tolerated(0.28) benign(0.264) TCGA-78-7161-01 3 150690505 150690505 C T CLRN1 5'Flank 0.10 TCGA-78-7161-01 3 164907724 164907724 A T SLITRK3 Missense_Mutation p.S299T 0.24 tolerated(0.3) benign(0.073) TCGA-78-7161-01 3 36897333 36897333 C T TRANK1 Missense_Mutation p.E1250K 0.22 tolerated(0.09) possibly_damaging(0.794) TCGA-78-7161-01 3 38739794 38739794 G A SCN10A Silent p.D1639D 0.25 TCGA-78-7161-01 3 48461086 48461086 G A PLXNB1 Missense_Mutation p.S870L 0.21 deleterious(0.01) probably_damaging(0.989) TCGA-78-7161-01 3 48697796 48697796 T C CELSR3 Missense_Mutation p.M758V 0.28 deleterious(0.04) benign(0) TCGA-78-7161-01 3 7721841 7721841 G C GRM7 Missense_Mutation p.E853Q 0.65 tolerated(0.4) benign(0.398) TCGA-78-7161-01 4 123264593 123264593 C T KIAA1109 Silent p.G4127G 0.29 TCGA-78-7161-01 4 1346874 1346874 C T UVSSA Silent p.L203L 0.36 TCGA-78-7161-01 4 141832232 141832233 TT A RNF150 Intron 0.21 TCGA-78-7161-01 4 164393001 164393001 C A TKTL2 3'UTR 0.42 TCGA-78-7161-01 4 170628234 170628234 G T CLCN3 Missense_Mutation p.D656Y 0.29 deleterious(0) possibly_damaging(0.861) TCGA-78-7161-01 4 174292310 174292310 C G SAP30 5'UTR 0.62 TCGA-78-7161-01 4 46043081 46043081 G C GABRG1 Missense_Mutation p.S441C 0.67 deleterious(0) possibly_damaging(0.832) TCGA-78-7161-01 4 48136204 48136204 G A TXK 5'UTR 0.71 TCGA-78-7161-01 4 7802188 7802188 T A AFAP1 Missense_Mutation p.Q416L 0.18 deleterious(0) possibly_damaging(0.796) TCGA-78-7161-01 5 1232907 1232907 T C SLC6A18 Missense_Mutation p.Y115H 0.32 deleterious(0) probably_damaging(0.988) TCGA-78-7161-01 5 131895051 131895051 G T RAD50 Missense_Mutation p.D69Y 0.70 deleterious(0) probably_damaging(1) TCGA-78-7161-01 5 140626944 140626944 G A PCDHB15 Missense_Mutation p.A600T 0.25 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-78-7161-01 5 140711076 140711076 G T PCDHGA1 Silent p.G275G 0.37 TCGA-78-7161-01 5 140719315 140719315 C A PCDHGA2 Silent p.T259T 0.36 TCGA-78-7161-01 5 140802988 140802988 G T PCDHGA11 Missense_Mutation p.G732W 0.31 deleterious_low_confidence(0) possibly_damaging(0.89) TCGA-78-7161-01 5 142500655 142500655 C T ARHGAP26 Silent p.I547I 0.32 TCGA-78-7161-01 5 156997967 156997967 G T ADAM19 Missense_Mutation p.P39H 0.51 tolerated(0.11) possibly_damaging(0.605) TCGA-78-7161-01 5 34004754 34004754 C A AMACR Missense_Mutation p.M159I 0.31 tolerated(0.21) benign(0.012) TCGA-78-7161-01 5 52096562 52096562 C G PELO Missense_Mutation p.L112V 0.20 tolerated(0.07) possibly_damaging(0.498) TCGA-78-7161-01 5 64625273 64625273 C G ADAMTS6 Missense_Mutation p.R385S 0.76 deleterious(0) possibly_damaging(0.861) TCGA-78-7161-01 5 71616013 71616013 C A MRPS27 Silent p.L12L 0.75 TCGA-78-7161-01 6 112469529 112469529 T G LAMA4 Missense_Mutation p.Q728P 0.25 tolerated(0.57) benign(0.002) TCGA-78-7161-01 6 116429571 116429571 A C NT5DC1 Missense_Mutation p.K77T 0.81 deleterious(0) probably_damaging(0.968) TCGA-78-7161-01 6 116442887 116442887 G T COL10A1 Missense_Mutation p.P131Q 0.81 tolerated(0.15) unknown(0) TCGA-78-7161-01 6 117586942 117586942 G A VGLL2 Missense_Mutation p.V6I 0.76 deleterious(0.04) probably_damaging(0.99) TCGA-78-7161-01 6 132892340 132892340 G T TAAR6 Nonsense_Mutation p.E294* 0.77 TCGA-78-7161-01 6 167789539 167789539 C A TCP10 Silent p.P201P 0.38 TCGA-78-7161-01 6 80878701 80878701 A C BCKDHB Missense_Mutation p.H196P 0.25 deleterious(0.01) possibly_damaging(0.759) TCGA-78-7161-01 7 108155242 108155242 C A PNPLA8 Missense_Mutation p.D232Y 0.50 deleterious(0.05) benign(0.003) TCGA-78-7161-01 7 116593751 116593751 G T ST7 Intron 0.18 TCGA-78-7161-01 7 127013707 127013707 T A ZNF800 Silent p.I561I 0.45 TCGA-78-7161-01 7 143929768 143929768 G T OR2A42 Missense_Mutation p.P57T 0.94 deleterious(0) benign(0.404) TCGA-78-7161-01 7 146997361 146997361 G T CNTNAP2 Missense_Mutation p.G493C 0.36 deleterious(0) probably_damaging(0.999) TCGA-78-7161-01 7 149512270 149512270 G T SSPO RNA 0.42 TCGA-78-7161-01 7 16666726 16666726 G A ANKMY2 Silent p.A70A 0.27 TCGA-78-7161-01 7 20698729 20698729 G A ABCB5 Intron 0.22 TCGA-78-7161-01 7 44573443 44573443 G A NPC1L1 Missense_Mutation p.R726W 0.27 deleterious(0.01) benign(0.444) TCGA-78-7161-01 7 92158138 92158138 G T RBM48 Missense_Mutation p.S4I 0.28 deleterious(0.03) benign(0.235) TCGA-78-7161-01 7 95726812 95726812 T C DYNC1I1 Silent p.N615N 0.52 TCGA-78-7161-01 8 104420013 104420013 C A SLC25A32 Splice_Site p.X52_splice 0.55 TCGA-78-7161-01 8 110455991 110455991 A - PKHD1L1 Frame_Shift_Del p.N1552Ifs*17 0.18 TCGA-78-7161-01 8 114326875 114326875 G T CSMD3 Nonsense_Mutation p.S109* 0.28 TCGA-78-7161-01 8 114389327 114389327 C A CSMD3 Intron 0.23 TCGA-78-7161-01 8 116631998 116631998 G T TRPS1 Missense_Mutation p.N109K 0.12 deleterious_low_confidence(0) benign(0.172) TCGA-78-7161-01 8 124195334 124195334 T A FAM83A Missense_Mutation p.C80S 0.51 tolerated(0.42) benign(0.011) TCGA-78-7161-01 8 144557696 144557696 C T ZC3H3 Missense_Mutation p.G592D 0.14 tolerated(0.31) benign(0.305) TCGA-78-7161-01 8 2796146 2796146 C A CSMD1 Missense_Mutation p.R3552S 0.62 probably_damaging(0.991) TCGA-78-7161-01 8 37978623 37978623 G T ASH2L Missense_Mutation p.R374I 0.45 deleterious(0) possibly_damaging(0.721) TCGA-78-7161-01 8 6914118 6914118 C A DEFA5 Missense_Mutation p.Q34H 0.84 deleterious(0) probably_damaging(0.964) TCGA-78-7161-01 8 82607198 82607198 T C SLC10A5 Missense_Mutation p.K4E 0.20 tolerated(0.06) benign(0.265) TCGA-78-7161-01 8 87386340 87386340 C G WWP1 Missense_Mutation p.Q21E 0.23 tolerated(0.19) benign(0.077) TCGA-78-7161-01 8 87393038 87393038 A G WWP1 Missense_Mutation p.K52E 0.14 deleterious(0.01) possibly_damaging(0.676) TCGA-78-7161-01 8 87878811 87878811 A T CNBD1 Missense_Mutation p.N30Y 0.33 deleterious(0.04) benign(0.123) TCGA-78-7161-01 9 114246668 114246668 A G KIAA0368 Missense_Mutation p.F82S 0.30 deleterious_low_confidence(0) unknown(0) TCGA-78-7161-01 9 119065114 119065114 G A PAPPA Missense_Mutation p.C1011Y 0.14 deleterious(0) benign(0.384) TCGA-78-7161-01 9 131193497 131193497 C T CERCAM Missense_Mutation p.P373L 0.19 deleterious(0) probably_damaging(0.997) TCGA-78-7161-01 9 136307772 136307772 C T ADAMTS13 Silent p.A714A 0.15 TCGA-78-7161-01 9 16419339 16419339 C A BNC2 Missense_Mutation p.G983V 0.39 tolerated(0.19) benign(0.158) TCGA-78-7161-01 9 21481120 21481120 G A IFNE Missense_Mutation p.P192S 0.41 tolerated_low_confidence(0.82) benign(0.003) TCGA-78-7161-01 9 328110 328110 A G DOCK8 Missense_Mutation p.Q328R 0.32 tolerated(0.22) benign(0.147) TCGA-78-7161-01 9 77411743 77411743 A G TRPM6 Missense_Mutation p.S769P 0.19 tolerated(0.05) probably_damaging(0.99) TCGA-78-7161-01 9 79323992 79323992 G A PRUNE2 Silent p.S1066S 0.33 TCGA-78-7161-01 9 90502170 90502170 C A SPATA31E1 Missense_Mutation p.P923Q 0.22 deleterious(0) possibly_damaging(0.878) TCGA-78-7161-01 X 110395675 110395675 G C PAK3 Silent p.S192S 0.20 TCGA-78-7161-01 X 110439078 110439078 A T PAK3 Missense_Mutation p.Q409H 0.18 tolerated(0.08) probably_damaging(0.912) TCGA-78-7161-01 X 117722150 117722150 C A DOCK11 Missense_Mutation p.Q616K 0.16 tolerated(0.94) benign(0.001) TCGA-78-7161-01 X 123516628 123516628 T C TENM1 Silent p.Q2444Q 0.18 TCGA-78-7161-01 X 125298852 125298852 G T DCAF12L2 Silent p.G352G 0.15 TCGA-78-7161-01 X 134988265 134988265 C G SAGE1 Silent p.P179P 0.24 TCGA-78-7161-01 X 135829707 135829707 C A ARHGEF6 Missense_Mutation p.K98N 0.16 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-78-7161-01 X 136649818 136649818 C T ZIC3 Missense_Mutation p.T323M 0.08 deleterious(0) possibly_damaging(0.749) TCGA-78-7161-01 X 152806836 152806836 T C ATP2B3 Silent p.N76N 0.61 TCGA-78-7161-01 X 153040429 153040429 C - PLXNB3 Frame_Shift_Del p.P1366Lfs*68 0.21 TCGA-78-7161-01 X 154493618 154493618 G T RAB39B 5'UTR 0.20 TCGA-78-7161-01 X 154493619 154493619 G T RAB39B 5'UTR 0.20 TCGA-78-7161-01 X 1712374 1712374 G C AKAP17A Missense_Mutation p.V7L 0.32 deleterious(0) probably_damaging(0.995) TCGA-78-7161-01 X 17819428 17819428 G T RAI2 Missense_Mutation p.P235T 0.21 tolerated(0.06) unknown(0) TCGA-78-7161-01 X 32380967 32380967 G T DMD Missense_Mutation p.P1755T 0.55 possibly_damaging(0.803) TCGA-78-7161-01 X 34961678 34961678 G T FAM47B Missense_Mutation p.A244S 0.23 tolerated(0.36) possibly_damaging(0.614) TCGA-78-7161-01 X 34961679 34961679 C A FAM47B Missense_Mutation p.A244E 0.22 tolerated(0.07) possibly_damaging(0.623) TCGA-78-7161-01 X 34961693 34961693 G A FAM47B Missense_Mutation p.V249M 0.20 tolerated(0.2) benign(0.006) TCGA-78-7161-01 X 47487635 47487635 G A CFP Missense_Mutation p.S90L 0.15 deleterious(0) probably_damaging(0.997) TCGA-78-7161-01 X 54956321 54956321 C A TRO Missense_Mutation p.T1055N 0.29 deleterious(0) possibly_damaging(0.573) TCGA-78-7161-01 X 55478884 55478884 A G MAGEH1 Missense_Mutation p.Q26R 0.33 tolerated_low_confidence(0.09) benign(0.036) TCGA-78-7161-01 X 70373331 70373331 C A NLGN3 Silent p.S174S 0.27 TCGA-78-7161-01 X 71840619 71840619 T A PHKA1 Missense_Mutation p.D698V 0.20 deleterious(0.01) benign(0) TCGA-78-7161-01 X 79947425 79947425 C A BRWD3 Missense_Mutation p.L1126F 0.30 deleterious(0.02) possibly_damaging(0.714) TCGA-78-7161-01 X 91873896 91873896 C A PCDH11X Missense_Mutation p.P1334Q 0.16 deleterious_low_confidence(0) possibly_damaging(0.586) TCGA-78-7161-01 X 9683028 9683028 C A TBL1X Missense_Mutation p.S564R 0.21 deleterious(0.05) probably_damaging(0.979) TCGA-78-7161-01 X 99956241 99956241 C G SYTL4 Missense_Mutation p.R137S 0.18 deleterious(0) benign(0.005) TCGA-78-7162-01 10 24564650 24564650 G A KIAA1217 Intron 0.23 TCGA-78-7162-01 10 31815884 31815884 G A ZEB1 Missense_Mutation p.D1024N 0.09 deleterious(0) probably_damaging(0.996) TCGA-78-7162-01 10 64136374 64136374 G A ZNF365 Missense_Mutation p.G141E 0.13 tolerated(0.51) benign(0.228) TCGA-78-7162-01 11 7335023 7335023 G A SYT9 Missense_Mutation p.E299K 0.04 tolerated(0.88) benign(0.065) TCGA-78-7162-01 11 9042630 9042630 G C SCUBE2 Missense_Mutation p.R960G 0.16 deleterious(0) probably_damaging(0.999) TCGA-78-7162-01 11 9321238 9321238 C A TMEM41B Missense_Mutation p.W44C 0.09 tolerated(0.21) benign(0) TCGA-78-7162-01 12 130015687 130015687 A T TMEM132D Missense_Mutation p.D344E 0.06 tolerated(0.36) benign(0.02) TCGA-78-7162-01 12 70964879 70964879 G T PTPRB Silent p.G1099G 0.12 TCGA-78-7162-01 15 34455835 34455835 T C KATNBL1 Missense_Mutation p.N15D 0.12 tolerated(0.29) benign(0.02) TCGA-78-7162-01 15 91456505 91456505 G A MAN2A2 Missense_Mutation p.V863M 0.09 deleterious(0.02) benign(0.238) TCGA-78-7162-01 15 93567613 93567613 A T CHD2 Missense_Mutation p.D1722V 0.11 deleterious_low_confidence(0) possibly_damaging(0.723) TCGA-78-7162-01 16 22155616 22155616 T A VWA3A Missense_Mutation p.C881S 0.12 tolerated(0.13) benign(0.063) TCGA-78-7162-01 16 7637294 7637294 G A RBFOX1 Missense_Mutation p.G174S 0.09 deleterious(0) possibly_damaging(0.559) TCGA-78-7162-01 17 36499178 36499178 C T GPR179 Silent p.Q165Q 0.10 TCGA-78-7162-01 17 57290862 57290862 C T SMG8 Missense_Mutation p.S893L 0.05 deleterious(0.02) possibly_damaging(0.828) TCGA-78-7162-01 17 73316622 73316622 C A GRB2 Missense_Mutation p.V161F 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-78-7162-01 17 74004671 74004671 C A EVPL Missense_Mutation p.V1539L 0.14 tolerated(1) benign(0.007) TCGA-78-7162-01 18 66344295 66344295 T C TMX3 Missense_Mutation p.K414E 0.10 deleterious_low_confidence(0.01) benign(0.03) TCGA-78-7162-01 18 74671705 74671705 A G ZNF236 Silent p.K1723K 0.12 TCGA-78-7162-01 19 10610235 10610235 C A KEAP1 Missense_Mutation p.A159S 0.14 tolerated(0.06) probably_damaging(0.999) TCGA-78-7162-01 19 31768243 31768243 G A TSHZ3 Missense_Mutation p.S819L 0.07 tolerated(0.16) possibly_damaging(0.658) TCGA-78-7162-01 19 31769932 31769932 T G TSHZ3 Missense_Mutation p.K256T 0.13 deleterious(0) probably_damaging(0.999) TCGA-78-7162-01 19 36832176 36832176 G A ZFP14 Silent p.R184R 0.13 TCGA-78-7162-01 19 36832177 36832177 C A ZFP14 Missense_Mutation p.R184L 0.12 tolerated(0.73) benign(0.051) TCGA-78-7162-01 19 37309329 37309329 A G ZNF790 3'UTR 0.17 TCGA-78-7162-01 19 49246723 49246723 G A IZUMO1 Nonsense_Mutation p.R160* 0.10 TCGA-78-7162-01 19 6415180 6415180 G A KHSRP Missense_Mutation p.P700L 0.18 tolerated_low_confidence(0.18) unknown(0) TCGA-78-7162-01 1 150789322 150789326 GTTGG - ARNT Frame_Shift_Del p.Q581Afs*21 0.24 TCGA-78-7162-01 1 151107690 151107690 C G SEMA6C Missense_Mutation p.C510S 0.08 deleterious(0) benign(0.303) TCGA-78-7162-01 1 160793521 160793521 T C LY9 Missense_Mutation p.Y589H 0.06 tolerated(0.24) probably_damaging(0.999) TCGA-78-7162-01 1 165513896 165513896 C T LRRC52 Silent p.F121F 0.03 TCGA-78-7162-01 1 169356302 169356302 C T BLZF1 Missense_Mutation p.S362L 0.05 deleterious(0.01) benign(0.164) TCGA-78-7162-01 1 175086232 175086232 G C TNN Missense_Mutation p.Q759H 0.04 deleterious(0.04) benign(0.012) TCGA-78-7162-01 1 182369568 182369568 T G TEDDM1 Missense_Mutation p.Q18P 0.20 deleterious(0.01) benign(0.001) TCGA-78-7162-01 1 196973882 196973882 G A CFHR5 Silent p.V474V 0.05 TCGA-78-7162-01 1 198666011 198666011 G C PTPRC Missense_Mutation p.D91H 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.739) TCGA-78-7162-01 1 217947767 217947767 C A SPATA17 Missense_Mutation p.P204H 0.09 tolerated(0.13) benign(0.006) TCGA-78-7162-01 1 21804741 21804741 A T NBPF3 Missense_Mutation p.D366V 0.13 tolerated(0.27) benign(0.046) TCGA-78-7162-01 1 236306205 236306205 C A GPR137B Missense_Mutation p.L95I 0.13 deleterious(0) probably_damaging(1) TCGA-78-7162-01 1 243727072 243727072 C T AKT3 Missense_Mutation p.A300T 0.05 tolerated(0.09) benign(0.005) TCGA-78-7162-01 1 247162681 247162681 G A ZNF695 Silent p.N76N 0.09 TCGA-78-7162-01 1 248308622 248308622 C A OR2M5 Missense_Mutation p.P58H 0.22 deleterious(0) probably_damaging(0.986) TCGA-78-7162-01 1 29069392 29069392 C G YTHDF2 Missense_Mutation p.P204A 0.14 tolerated(0.4) benign(0.046) TCGA-78-7162-01 1 979091 979091 G T AGRN Missense_Mutation p.V593L 0.09 deleterious(0) benign(0.442) TCGA-78-7162-01 20 54579155 54579155 C T CBLN4 Missense_Mutation p.V25I 0.11 deleterious_low_confidence(0) benign(0.433) TCGA-78-7162-01 22 18070012 18070012 C T SLC25A18 Missense_Mutation p.L174F 0.07 tolerated(0.07) possibly_damaging(0.871) TCGA-78-7162-01 22 27012230 27012230 C T CRYBB1 Silent p.G18G 0.15 TCGA-78-7162-01 22 41926706 41926706 A C POLR3H Silent p.A182A 0.12 TCGA-78-7162-01 2 120395937 120395937 G C PCDP1 Missense_Mutation p.E693Q 0.05 deleterious(0.03) benign(0.071) TCGA-78-7162-01 2 136537772 136537772 C T UBXN4 Missense_Mutation p.S402F 0.07 deleterious(0.01) benign(0.255) TCGA-78-7162-01 2 136537773 136537773 C T UBXN4 Silent p.S402S 0.07 TCGA-78-7162-01 2 182774637 182774637 G A SSFA2 Silent p.T475T 0.07 TCGA-78-7162-01 2 219941078 219941078 C A NHEJ1 3'UTR 0.12 TCGA-78-7162-01 2 234622444 234622444 C A UGT1A5 Silent p.I269I 0.18 TCGA-78-7162-01 2 24056803 24056803 G C ATAD2B Missense_Mutation p.L572V 0.12 deleterious(0) probably_damaging(0.999) TCGA-78-7162-01 2 36771546 36771546 T C CRIM1 Missense_Mutation p.I884T 0.09 tolerated(0.13) benign(0.054) TCGA-78-7162-01 2 39481642 39481642 C T MAP4K3 Silent p.V830V 0.11 TCGA-78-7162-01 2 89986381 89986381 G T IGKV2D-29 Silent p.L10L 0.13 TCGA-78-7162-01 3 122168504 122168504 G A KPNA1 Silent p.L278L 0.06 TCGA-78-7162-01 3 124281895 124281895 G C KALRN Missense_Mutation p.R85P 0.12 deleterious(0) benign(0.399) TCGA-78-7162-01 3 127816180 127816180 C T RUVBL1 Missense_Mutation p.V327I 0.24 tolerated(0.18) benign(0.22) TCGA-78-7162-01 3 169664021 169664021 C A RP11-379K17.4 RNA 0.13 TCGA-78-7162-01 3 182743552 182743552 A G MCCC1 Silent p.Y574Y 0.08 TCGA-78-7162-01 3 33195270 33195270 C G SUSD5 Missense_Mutation p.G285A 0.07 tolerated(0.41) benign(0.118) TCGA-78-7162-01 3 41939949 41939949 T A ULK4 Missense_Mutation p.K441N 0.12 deleterious(0.04) possibly_damaging(0.831) TCGA-78-7162-01 3 47385291 47385291 G T KLHL18 Missense_Mutation p.V529F 0.15 deleterious(0) possibly_damaging(0.645) TCGA-78-7162-01 3 49568391 49568391 C T DAG1 Silent p.S149S 0.16 TCGA-78-7162-01 3 93699219 93699219 G A ARL13B 5'UTR 0.23 TCGA-78-7162-01 3 98217213 98217213 C A OR5K2 Missense_Mutation p.S230Y 0.08 deleterious(0) possibly_damaging(0.534) TCGA-78-7162-01 4 104512727 104512727 G A TACR3 Silent p.I334I 0.18 TCGA-78-7162-01 4 120446753 120446753 C T PDE5A Missense_Mutation p.R577Q 0.19 deleterious(0) possibly_damaging(0.779) TCGA-78-7162-01 4 2886264 2886264 G C ADD1 Silent p.V127V 0.04 TCGA-78-7162-01 4 66270177 66270177 G T EPHA5 Missense_Mutation p.Q569K 0.17 tolerated(0.22) benign(0.015) TCGA-78-7162-01 4 90856622 90856622 C T MMRN1 Silent p.S597S 0.08 TCGA-78-7162-01 5 130840380 130840380 A G RAPGEF6 Missense_Mutation p.M398T 0.09 tolerated(0.08) probably_damaging(0.979) TCGA-78-7162-01 5 140720584 140720584 C A PCDHGA2 Silent p.A682A 0.04 TCGA-78-7162-01 5 159344154 159344154 A G ADRA1B Missense_Mutation p.N81S 0.05 deleterious(0) probably_damaging(0.998) TCGA-78-7162-01 5 70818760 70818760 C T BDP1 Missense_Mutation p.L1791F 0.06 tolerated(0.17) possibly_damaging(0.907) TCGA-78-7162-01 5 96011290 96011290 G C CAST Missense_Mutation p.K41N 0.06 deleterious(0) possibly_damaging(0.798) TCGA-78-7162-01 6 28473575 28473575 C A GPX6 Missense_Mutation p.V122L 0.07 deleterious(0.02) possibly_damaging(0.693) TCGA-78-7162-01 6 31543498 31543498 C A TNF 5'UTR 0.09 TCGA-78-7162-01 6 33144245 33144245 C T COL11A2 Missense_Mutation p.G626R 0.09 probably_damaging(0.979) TCGA-78-7162-01 6 42832802 42832802 G A GLTSCR1L Missense_Mutation p.S953N 0.07 tolerated_low_confidence(0.93) benign(0.005) TCGA-78-7162-01 6 43191089 43191089 G T CUL9 Missense_Mutation p.R2413L 0.33 deleterious(0) benign(0.129) TCGA-78-7162-01 6 52288786 52288786 G T EFHC1 Missense_Mutation p.G36C 0.27 deleterious(0) probably_damaging(1) TCGA-78-7162-01 7 101833099 101833099 G T CUX1 Nonsense_Mutation p.E353* 0.23 TCGA-78-7162-01 7 142625896 142625896 G T TRPV5 Missense_Mutation p.L218M 0.14 tolerated(0.11) probably_damaging(0.954) TCGA-78-7162-01 7 23775275 23775275 A - STK31 Frame_Shift_Del p.E202Rfs*58 0.16 TCGA-78-7162-01 7 34085929 34085929 A T BMPER Silent p.T196T 0.11 TCGA-78-7162-01 7 50737427 50737429 CGG AGGC GRB10 Frame_Shift_Ins p.A165Gfs*7 0.22 TCGA-78-7162-01 7 82585054 82585054 C T PCLO Missense_Mutation p.E1739K 0.07 unknown(0) TCGA-78-7162-01 7 89790341 89790341 C G STEAP1 Missense_Mutation p.Q103E 0.08 tolerated(0.41) benign(0.001) TCGA-78-7162-01 7 99798718 99798718 C A STAG3 Silent p.S689S 0.18 TCGA-78-7162-01 8 113314076 113314076 C G CSMD3 Missense_Mutation p.V2796L 0.12 deleterious(0.01) probably_damaging(0.972) TCGA-78-7162-01 8 132998476 132998476 T C EFR3A Silent p.F635F 0.16 TCGA-78-7162-01 8 2944663 2944663 G C CSMD1 Missense_Mutation p.P2477R 0.10 benign(0.169) TCGA-78-7162-01 9 117359867 117359867 C T ATP6V1G1 Silent p.G67G 0.08 TCGA-78-7162-01 9 26926558 26926558 C A PLAA Missense_Mutation p.G189V 0.13 deleterious(0) probably_damaging(0.995) TCGA-78-7162-01 9 730172 730172 G A KANK1 Silent p.L940L 0.08 TCGA-78-7162-01 9 86504081 86504081 C G KIF27 Missense_Mutation p.E633Q 0.05 tolerated(0.07) possibly_damaging(0.752) TCGA-78-7162-01 X 106198242 106198242 C T MORC4 Missense_Mutation p.G529E 0.28 tolerated(0.49) benign(0.003) TCGA-78-7162-01 X 117712548 117712548 G A DOCK11 Missense_Mutation p.V484I 0.07 tolerated(0.2) benign(0.207) TCGA-78-7162-01 X 24228777 24228777 A T ZFX Nonsense_Mutation p.R568* 0.21 TCGA-78-7162-01 X 54785155 54785155 C A ITIH6 Missense_Mutation p.R451L 0.25 tolerated(0.65) benign(0.033) TCGA-78-7163-01 11 4903940 4903940 C A OR51T1 Missense_Mutation p.P298T 0.06 deleterious(0.01) possibly_damaging(0.869) TCGA-78-7163-01 11 5410836 5410836 C A OR51M1 Missense_Mutation p.P70T 0.06 deleterious(0) possibly_damaging(0.799) TCGA-78-7163-01 11 6806758 6806758 A G OR2AG1 Missense_Mutation p.M164V 0.04 deleterious(0) possibly_damaging(0.517) TCGA-78-7163-01 11 88337977 88337977 G A GRM5 Missense_Mutation p.R435W 0.36 deleterious(0) possibly_damaging(0.846) TCGA-78-7163-01 11 99872788 99872788 G A CNTN5 Silent p.P300P 0.23 TCGA-78-7163-01 12 111923133 111923133 A C ATXN2 Silent p.P980P 0.32 TCGA-78-7163-01 12 52200312 52200313 - T SCN8A Frame_Shift_Ins p.I1682Yfs*3 0.20 TCGA-78-7163-01 14 106311905 106311905 G A IGHD Missense_Mutation p.T36M 0.33 tolerated(0.09) benign(0.003) TCGA-78-7163-01 14 32561096 32561096 T C ARHGAP5 Silent p.T407T 0.22 TCGA-78-7163-01 15 42446614 42446614 G A PLA2G4F Missense_Mutation p.A76V 0.25 deleterious(0) probably_damaging(0.992) TCGA-78-7163-01 15 91482981 91482981 G A UNC45A Silent p.T149T 0.47 TCGA-78-7163-01 19 42558472 42558472 C T GRIK5 Missense_Mutation p.M352I 0.29 tolerated(0.39) benign(0.29) TCGA-78-7163-01 19 4695514 4695514 A G DPP9 Missense_Mutation p.L410P 0.22 deleterious(0) probably_damaging(0.988) TCGA-78-7163-01 19 53794367 53794367 G A BIRC8 5'UTR 0.55 TCGA-78-7163-01 1 37346266 37346266 C G GRIK3 Silent p.R173R 0.23 TCGA-78-7163-01 20 11899098 11899100 AAG - BTBD3 In_Frame_Del p.K61del 0.20 TCGA-78-7163-01 20 49247380 49247380 G A FAM65C Missense_Mutation p.S2L 0.18 deleterious(0) probably_damaging(1) TCGA-78-7163-01 22 36902334 36902334 C T FOXRED2 Missense_Mutation p.A46T 0.56 deleterious(0.01) probably_damaging(0.983) TCGA-78-7163-01 2 219099087 219099087 G T ARPC2 Missense_Mutation p.V79L 0.14 tolerated(0.2) benign(0.008) TCGA-78-7163-01 2 225630503 225630503 G C DOCK10 Missense_Mutation p.R2166G 0.24 deleterious_low_confidence(0.01) benign(0.162) TCGA-78-7163-01 2 47601056 47601056 C G EPCAM Missense_Mutation p.D98E 0.05 tolerated(0.57) benign(0.027) TCGA-78-7163-01 2 61149129 61149129 C T REL Missense_Mutation p.S440L 0.14 tolerated(0.07) possibly_damaging(0.714) TCGA-78-7163-01 4 17805013 17805014 - A DCAF16 3'UTR 0.34 TCGA-78-7163-01 6 160999606 160999606 T G LPA Missense_Mutation p.T1474P 0.06 tolerated(0.18) possibly_damaging(0.628) TCGA-78-7163-01 6 44102330 44102330 C G TMEM63B Silent p.P3P 0.30 TCGA-78-7163-01 8 113402962 113402962 G C CSMD3 Nonsense_Mutation p.Y1955* 0.32 TCGA-78-7163-01 8 61766029 61766029 G A CHD7 Missense_Mutation p.D2249N 0.09 possibly_damaging(0.788) TCGA-78-7163-01 X 107310218 107310218 G A VSIG1 Missense_Mutation p.R125Q 0.08 deleterious(0) probably_damaging(1) TCGA-78-7163-01 X 20181107 20181107 C T RPS6KA3 Missense_Mutation p.V606I 0.39 tolerated(0.22) possibly_damaging(0.575) TCGA-78-7163-01 X 37553663 37553663 C A XK Missense_Mutation p.Q124K 0.54 tolerated(0.17) possibly_damaging(0.731) TCGA-78-7166-01 10 100219443 100219443 G T HPSE2 Missense_Mutation p.P556Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-78-7166-01 10 118196292 118196292 C A PNLIPRP3 Missense_Mutation p.T40K 0.25 deleterious(0.01) benign(0.003) TCGA-78-7166-01 10 121196210 121196210 C A GRK5 Silent p.V262V 0.24 TCGA-78-7166-01 10 131965194 131965194 A G GLRX3 Silent p.A221A 0.28 TCGA-78-7166-01 10 15255495 15255495 C G FAM171A1 Missense_Mutation p.G698R 0.28 tolerated(0.07) probably_damaging(0.999) TCGA-78-7166-01 10 30336510 30336510 C A KIAA1462 Missense_Mutation p.G78C 0.13 tolerated(0.07) probably_damaging(0.946) TCGA-78-7166-01 10 64967073 64967073 G A JMJD1C Silent p.T1452T 0.29 TCGA-78-7166-01 10 863720 863720 T A LARP4B Missense_Mutation p.E547V 0.26 deleterious(0) probably_damaging(0.976) TCGA-78-7166-01 10 88477783 88477783 G C LDB3 Missense_Mutation p.C585S 0.28 deleterious(0) probably_damaging(0.977) TCGA-78-7166-01 10 93743990 93743990 G T BTAF1 Silent p.P752P 0.20 TCGA-78-7166-01 10 94381209 94381209 A G KIF11 Missense_Mutation p.Y399C 0.26 deleterious(0) probably_damaging(0.963) TCGA-78-7166-01 10 96522526 96522526 C T CYP2C19 Nonsense_Mutation p.Q22* 0.31 TCGA-78-7166-01 11 118773311 118773311 C A BCL9L Missense_Mutation p.G381W 0.27 probably_damaging(0.979) TCGA-78-7166-01 11 12183922 12183922 T C MICAL2 Missense_Mutation p.S74P 0.28 deleterious(0) benign(0.205) TCGA-78-7166-01 11 133789936 133789936 G T IGSF9B Silent p.L1228L 0.35 TCGA-78-7166-01 11 13722001 13722001 C T FAR1 Silent p.F109F 0.08 TCGA-78-7166-01 11 15260573 15260573 G T INSC Missense_Mutation p.R496L 0.17 deleterious(0) probably_damaging(1) TCGA-78-7166-01 11 19077389 19077389 A T MRGPRX2 Silent p.T187T 0.43 TCGA-78-7166-01 11 40137465 40137465 G T LRRC4C Silent p.L126L 0.41 TCGA-78-7166-01 11 5080461 5080461 G A OR52E2 Nonsense_Mutation p.Q133* 0.20 TCGA-78-7166-01 11 55433265 55433265 T C OR4C6 Missense_Mutation p.I208T 0.36 tolerated_low_confidence(0.38) benign(0.3) TCGA-78-7166-01 11 59939710 59939710 G T MS4A6A 3'Flank 0.35 TCGA-78-7166-01 11 62285076 62285076 C A AHNAK Missense_Mutation p.A5605S 0.17 possibly_damaging(0.514) TCGA-78-7166-01 11 66360278 66360278 C T CCDC87 Missense_Mutation p.G70E 0.05 tolerated(0.1) possibly_damaging(0.888) TCGA-78-7166-01 11 68747617 68747617 C T MRGPRD Missense_Mutation p.G280D 0.29 deleterious(0) probably_damaging(1) TCGA-78-7166-01 11 71948755 71948755 G T INPPL1 Missense_Mutation p.R1156L 0.32 deleterious(0.03) benign(0.25) TCGA-78-7166-01 11 82645284 82645284 T G C11orf82 Missense_Mutation p.C968W 0.28 deleterious(0.02) possibly_damaging(0.72) TCGA-78-7166-01 11 86130969 86130969 G T CCDC81 Splice_Site p.X564_splice 0.19 TCGA-78-7166-01 11 89070683 89070683 A T NOX4 Missense_Mutation p.F483I 0.24 deleterious(0.04) benign(0.061) TCGA-78-7166-01 12 100729587 100729587 A G SCYL2 Splice_Site p.X644_splice 0.31 TCGA-78-7166-01 12 108011167 108011167 C G BTBD11 Missense_Mutation p.Q729E 0.23 tolerated(0.21) possibly_damaging(0.831) TCGA-78-7166-01 12 111801043 111801043 C A FAM109A Silent p.L76L 0.21 TCGA-78-7166-01 12 11461220 11461220 C A PRB4 Missense_Mutation p.G233W 0.30 deleterious_low_confidence(0) unknown(0) TCGA-78-7166-01 12 124395175 124395175 G T DNAH10 Missense_Mutation p.G3246C 0.30 possibly_damaging(0.89) TCGA-78-7166-01 12 133209344 133209344 C A POLE Silent p.G2014G 0.35 TCGA-78-7166-01 12 133256567 133256567 C A POLE Missense_Mutation p.E132D 0.31 tolerated(0.11) benign(0.232) TCGA-78-7166-01 12 15637142 15637142 G C PTPRO Missense_Mutation p.V104L 0.26 tolerated_low_confidence(0.1) benign(0.004) TCGA-78-7166-01 12 1863667 1863667 C G ADIPOR2 Missense_Mutation p.S53C 0.23 tolerated(0.07) benign(0.246) TCGA-78-7166-01 12 1940197 1940197 G T LRTM2 Missense_Mutation p.S55I 0.23 deleterious(0.02) probably_damaging(0.984) TCGA-78-7166-01 12 24736367 24736367 T A LINC00477 RNA 0.24 TCGA-78-7166-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.53 deleterious(0.04) probably_damaging(0.993) TCGA-78-7166-01 12 50290860 50290860 C A FAIM2 Missense_Mutation p.V130F 0.27 deleterious(0) possibly_damaging(0.848) TCGA-78-7166-01 12 52164461 52164461 C A SCN8A Silent p.G1213G 0.48 TCGA-78-7166-01 12 52180593 52180593 C A SCN8A Missense_Mutation p.L1404M 0.18 deleterious(0) probably_damaging(1) TCGA-78-7166-01 12 52984735 52984735 A C KRT72 Missense_Mutation p.L325R 0.25 deleterious(0) probably_damaging(1) TCGA-78-7166-01 12 54367460 54367460 C A HOXC11 Missense_Mutation p.S145R 0.28 deleterious(0.02) possibly_damaging(0.796) TCGA-78-7166-01 12 70988333 70988333 C A PTPRB Missense_Mutation p.G477V 0.34 deleterious(0) possibly_damaging(0.717) TCGA-78-7166-01 12 8673750 8673750 T A CLEC4D Silent p.S177S 0.23 TCGA-78-7166-01 12 9001432 9001432 C A A2ML1 Silent p.P650P 0.31 TCGA-78-7166-01 12 95603227 95603227 C A FGD6 Silent p.V611V 0.30 TCGA-78-7166-01 13 26788700 26788700 C - RNF6 Frame_Shift_Del p.G440Afs*9 0.25 TCGA-78-7166-01 13 32352717 32352717 G A RXFP2 Nonsense_Mutation p.W261* 0.22 TCGA-78-7166-01 13 39952639 39952639 G A LHFP Missense_Mutation p.A137V 0.28 tolerated(0.43) probably_damaging(0.994) TCGA-78-7166-01 13 49076859 49076859 C A RCBTB2 Splice_Site p.X373_splice 0.22 TCGA-78-7166-01 13 98641395 98641395 G A IPO5 Silent p.R166R 0.38 TCGA-78-7166-01 14 23393546 23393546 C G PRMT5 Missense_Mutation p.A378P 0.31 deleterious(0) probably_damaging(1) TCGA-78-7166-01 14 29237287 29237287 G C FOXG1 Missense_Mutation p.G268R 0.31 deleterious(0) probably_damaging(0.999) TCGA-78-7166-01 14 31346907 31346907 C A COCH Nonsense_Mutation p.S71* 0.25 TCGA-78-7166-01 14 60194214 60194214 G A RTN1 Silent p.P396P 0.44 TCGA-78-7166-01 14 64678779 64678779 C T SYNE2 Missense_Mutation p.S6275L 0.14 probably_damaging(0.999) TCGA-78-7166-01 14 75388072 75388072 C A RPS6KL1 Missense_Mutation p.R58L 0.19 deleterious(0.02) probably_damaging(0.927) TCGA-78-7166-01 14 86089443 86089443 C A FLRT2 Missense_Mutation p.H529N 0.25 tolerated(0.26) benign(0.191) TCGA-78-7166-01 14 93408113 93408113 C A ITPK1 Silent p.A346A 0.25 TCGA-78-7166-01 15 23811970 23811970 G T MKRN3 Missense_Mutation p.W347C 0.28 deleterious(0) probably_damaging(1) TCGA-78-7166-01 15 33925217 33925217 C A RYR3 Missense_Mutation p.Q979K 0.24 possibly_damaging(0.831) TCGA-78-7166-01 15 37100732 37100732 C T C15orf41 3'UTR 0.33 TCGA-78-7166-01 15 48058158 48058158 T A SEMA6D Missense_Mutation p.I507N 0.25 deleterious(0) benign(0.408) TCGA-78-7166-01 15 54527297 54527297 C T UNC13C Silent p.V1047V 0.16 TCGA-78-7166-01 15 54919169 54919169 G T UNC13C Missense_Mutation p.W2168L 0.25 deleterious_low_confidence(0) benign(0.055) TCGA-78-7166-01 15 65411761 65411761 C A PDCD7 Missense_Mutation p.Q429H 0.26 deleterious(0.01) probably_damaging(0.969) TCGA-78-7166-01 15 70371796 70371796 C A TLE3 Intron 0.27 TCGA-78-7166-01 15 86236596 86236597 - T AKAP13 Frame_Shift_Ins p.S1799Qfs*12 0.27 TCGA-78-7166-01 16 14334639 14334639 C T MKL2 Intron 0.24 TCGA-78-7166-01 16 50744743 50744743 G T NOD2 Silent p.T307T 0.34 TCGA-78-7166-01 16 57722417 57722417 G T GPR97 3'UTR 0.26 TCGA-78-7166-01 16 68264348 68264348 C G ESRP2 Missense_Mutation p.G670R 0.24 deleterious(0) possibly_damaging(0.905) TCGA-78-7166-01 16 84050184 84050184 G T SLC38A8 Missense_Mutation p.L368I 0.23 tolerated(1) benign(0.173) TCGA-78-7166-01 16 86575712 86575712 A T MTHFSD Missense_Mutation p.C184S 0.24 tolerated(0.07) possibly_damaging(0.855) TCGA-78-7166-01 17 2603704 2603704 C A CLUH Missense_Mutation p.R375L 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-78-7166-01 17 28410034 28410034 G A EFCAB5 Silent p.T1184T 0.33 TCGA-78-7166-01 17 3432144 3432144 G C TRPV3 Missense_Mutation p.P463R 0.31 deleterious(0.02) benign(0.134) TCGA-78-7166-01 17 36485944 36485944 G T GPR179 Silent p.R1170R 0.25 TCGA-78-7166-01 17 38347009 38347009 C T RAPGEFL1 Missense_Mutation p.H238Y 0.19 deleterious(0.01) possibly_damaging(0.841) TCGA-78-7166-01 17 45361973 45361973 C A ITGB3 Silent p.R176R 0.31 TCGA-78-7166-01 17 45773563 45773563 G T TBKBP1 Missense_Mutation p.D29Y 0.43 deleterious(0.02) possibly_damaging(0.571) TCGA-78-7166-01 17 5009405 5009405 T C ZNF232 Missense_Mutation p.Q350R 0.27 tolerated(0.72) benign(0.121) TCGA-78-7166-01 17 5064886 5064886 C T USP6 Silent p.S964S 0.22 TCGA-78-7166-01 17 62479064 62479064 C T POLG2 Missense_Mutation p.G388E 0.33 deleterious(0) probably_damaging(0.992) TCGA-78-7166-01 17 74533645 74533645 C A CYGB 5'UTR 0.30 TCGA-78-7166-01 17 77709293 77709293 G T ENPP7 Missense_Mutation p.G284V 0.23 deleterious(0) probably_damaging(0.999) TCGA-78-7166-01 18 63430170 63430170 G T CDH7 Missense_Mutation p.R31M 0.32 tolerated(0.09) benign(0.005) TCGA-78-7166-01 18 64211401 64211401 C A CDH19 Missense_Mutation p.V341F 0.16 deleterious(0.04) probably_damaging(0.921) TCGA-78-7166-01 19 10602739 10602739 A T KEAP1 Missense_Mutation p.F280Y 0.43 deleterious(0) benign(0.137) TCGA-78-7166-01 19 1207079 1207079 G T STK11 Missense_Mutation p.G56V 0.39 deleterious(0) probably_damaging(1) TCGA-78-7166-01 19 1207144 1207144 A G STK11 Missense_Mutation p.K78E 0.43 deleterious(0) probably_damaging(1) TCGA-78-7166-01 19 22605004 22605004 A T ZNF98 Missense_Mutation p.L8Q 0.34 tolerated_low_confidence(0.22) benign(0.003) TCGA-78-7166-01 19 22605005 22605005 G T ZNF98 Missense_Mutation p.L8I 0.36 tolerated_low_confidence(0.33) benign(0) TCGA-78-7166-01 19 41765541 41765541 C A AXL Missense_Mutation p.T806K 0.24 deleterious(0.01) benign(0.342) TCGA-78-7166-01 19 43414784 43414784 T A PSG6 Silent p.I218I 0.31 TCGA-78-7166-01 19 43689239 43689239 G - PSG5 Frame_Shift_Del p.P42Hfs*31 0.28 TCGA-78-7166-01 19 50212025 50212025 G T CPT1C Missense_Mutation p.G499C 0.19 deleterious(0) probably_damaging(1) TCGA-78-7166-01 19 51920651 51920651 A T SIGLEC10 Missense_Mutation p.C36S 0.18 deleterious(0) probably_damaging(0.999) TCGA-78-7166-01 19 51920652 51920652 C T SIGLEC10 Silent p.L35L 0.18 TCGA-78-7166-01 19 51961268 51961268 C T SIGLEC8 Missense_Mutation p.R125Q 0.35 tolerated(0.08) possibly_damaging(0.501) TCGA-78-7166-01 19 53014459 53014459 A T ZNF578 Silent p.A275A 0.26 TCGA-78-7166-01 19 53391385 53391385 G A ZNF320 Missense_Mutation p.S46F 0.12 tolerated(0.16) benign(0.09) TCGA-78-7166-01 19 55495055 55495055 G A NLRP2 Silent p.P663P 0.24 TCGA-78-7166-01 19 56539267 56539267 C A NLRP5 Silent p.L556L 0.26 TCGA-78-7166-01 19 57967672 57967672 C A VN1R1 Silent p.L61L 0.36 TCGA-78-7166-01 19 58199618 58199618 A G ZNF551 Missense_Mutation p.I659V 0.32 tolerated(0.86) benign(0.002) TCGA-78-7166-01 1 108185324 108185324 G T VAV3 Missense_Mutation p.L611M 0.28 tolerated(0.22) benign(0.169) TCGA-78-7166-01 1 12820947 12820947 G T C1orf158 3'UTR 0.32 TCGA-78-7166-01 1 152284875 152284875 G T FLG Silent p.S829S 0.47 TCGA-78-7166-01 1 152284876 152284876 G T FLG Missense_Mutation p.S829Y 0.47 benign(0.298) TCGA-78-7166-01 1 155451804 155451806 TCT CC ASH1L Frame_Shift_Del p.D286Vfs*12 0.25 TCGA-78-7166-01 1 156084745 156084745 C T LMNA Silent p.S12S 0.57 TCGA-78-7166-01 1 156437363 156437363 C T MEF2D 3'UTR 0.20 TCGA-78-7166-01 1 158324171 158324171 C A CD1E Silent p.P21P 0.50 TCGA-78-7166-01 1 158605732 158605732 C G SPTA1 Missense_Mutation p.W1801C 0.55 deleterious(0) probably_damaging(1) TCGA-78-7166-01 1 158725228 158725228 A T OR6K6 Missense_Mutation p.D208V 0.15 deleterious(0) probably_damaging(0.99) TCGA-78-7166-01 1 158815601 158815601 C A MNDA Silent p.V265V 0.51 TCGA-78-7166-01 1 159410229 159410229 T C OR10J1 Silent p.S227S 0.21 TCGA-78-7166-01 1 169519078 169519078 T A F5 Silent p.L524L 0.17 TCGA-78-7166-01 1 183881336 183881336 G C RGL1 Silent p.S596S 0.25 TCGA-78-7166-01 1 185109211 185109211 C A TRMT1L Nonsense_Mutation p.E335* 0.17 TCGA-78-7166-01 1 205053097 205053097 G C TMEM81 Missense_Mutation p.R118G 0.24 tolerated(0.38) possibly_damaging(0.755) TCGA-78-7166-01 1 206820932 206820932 A G DYRK3 Missense_Mutation p.N130S 0.15 tolerated(1) benign(0.001) TCGA-78-7166-01 1 215960025 215960025 C A USH2A Silent p.T3458T 0.13 TCGA-78-7166-01 1 220088709 220088709 C A SLC30A10 3'UTR 0.27 TCGA-78-7166-01 1 226030140 226030140 G T EPHX1 Silent p.T335T 0.33 TCGA-78-7166-01 1 229772385 229772385 A G URB2 Silent p.E675E 0.21 TCGA-78-7166-01 1 237802491 237802491 A T RYR2 Missense_Mutation p.S2369C 0.24 benign(0.198) TCGA-78-7166-01 1 242159549 242159549 G T MAP1LC3C Silent p.A120A 0.29 TCGA-78-7166-01 1 247163244 247163244 C A ZNF695 Missense_Mutation p.D46Y 0.18 tolerated(0.98) possibly_damaging(0.447) TCGA-78-7166-01 1 248308584 248308584 G C OR2M5 Missense_Mutation p.M45I 0.30 tolerated(0.06) benign(0.027) TCGA-78-7166-01 1 36564428 36564428 G T COL8A2 Missense_Mutation p.A285E 0.28 tolerated(1) unknown(0) TCGA-78-7166-01 1 46033774 46033774 G T AKR1A1 Silent p.L159L 0.12 TCGA-78-7166-01 1 47400757 47400757 G T CYP4A11 Silent p.A235A 0.23 TCGA-78-7166-01 1 70611486 70611486 A C LRRC40 Silent p.T602T 0.29 TCGA-78-7166-01 1 74507613 74507613 C A LRRIQ3 Missense_Mutation p.Q334H 0.36 tolerated(0.13) possibly_damaging(0.533) TCGA-78-7166-01 1 84867755 84867755 C A DNASE2B Silent p.A99A 0.30 TCGA-78-7166-01 20 19970827 19970827 A T RIN2 Missense_Mutation p.D696V 0.38 deleterious(0) probably_damaging(0.944) TCGA-78-7166-01 20 20024248 20024248 G A CRNKL1 Missense_Mutation p.A448V 0.30 tolerated(0.05) benign(0.067) TCGA-78-7166-01 20 36768012 36768012 C A TGM2 Missense_Mutation p.G382C 0.23 deleterious(0) probably_damaging(1) TCGA-78-7166-01 20 47888276 47888276 C A ZNFX1 Nonsense_Mutation p.G25* 0.30 TCGA-78-7166-01 20 52198208 52198208 G T ZNF217 Silent p.T386T 0.25 TCGA-78-7166-01 20 62839248 62839248 G T MYT1 Missense_Mutation p.Q233H 0.15 benign(0.423) TCGA-78-7166-01 21 15858294 15858294 A T SAMSN1 Missense_Mutation p.L422Q 0.33 tolerated(0.07) possibly_damaging(0.776) TCGA-78-7166-01 21 30699100 30699100 G T BACH1 Nonsense_Mutation p.G319* 0.29 TCGA-78-7166-01 21 44323690 44323690 G T NDUFV3 Missense_Mutation p.A190S 0.35 tolerated(0.08) possibly_damaging(0.799) TCGA-78-7166-01 22 24718430 24718430 T A SPECC1L Silent p.R494R 0.27 TCGA-78-7166-01 22 32802692 32802692 C A RTCB Missense_Mutation p.M99I 0.29 tolerated(0.08) benign(0.004) TCGA-78-7166-01 22 39388589 39388589 G A APOBEC3B 3'UTR 0.36 TCGA-78-7166-01 22 41670684 41670684 G A RANGAP1 Silent p.L54L 0.06 TCGA-78-7166-01 22 42070890 42070890 A G NHP2L1 3'UTR 0.21 TCGA-78-7166-01 2 100021119 100021119 C G REV1 Missense_Mutation p.A945P 0.31 deleterious(0.01) probably_damaging(1) TCGA-78-7166-01 2 100021122 100021122 C T REV1 Missense_Mutation p.E944K 0.30 tolerated(0.09) possibly_damaging(0.831) TCGA-78-7166-01 2 108475962 108475962 A C RGPD4 Missense_Mutation p.Q529P 0.22 deleterious(0) possibly_damaging(0.507) TCGA-78-7166-01 2 109384607 109384607 A T RANBP2 Missense_Mutation p.S2538C 0.25 deleterious(0) probably_damaging(0.982) TCGA-78-7166-01 2 112540062 112540062 C A ANAPC1 Missense_Mutation p.V1696F 0.12 tolerated(0.44) possibly_damaging(0.526) TCGA-78-7166-01 2 112540063 112540063 C A ANAPC1 Silent p.G1695G 0.12 TCGA-78-7166-01 2 141135766 141135766 C T LRP1B Missense_Mutation p.A3541T 0.31 benign(0) TCGA-78-7166-01 2 141739834 141739834 G T LRP1B Missense_Mutation p.Q928K 0.20 benign(0.038) TCGA-78-7166-01 2 152220570 152220570 C A TNFAIP6 Missense_Mutation p.Q70K 0.25 deleterious(0.01) probably_damaging(0.935) TCGA-78-7166-01 2 152507201 152507201 A T NEB Missense_Mutation p.C2372S 0.26 probably_damaging(0.996) TCGA-78-7166-01 2 160189152 160189152 G A BAZ2B Missense_Mutation p.L1948F 0.23 probably_damaging(1) TCGA-78-7166-01 2 163002070 163002070 C G GCG Silent p.V124V 0.03 TCGA-78-7166-01 2 182780424 182780424 C T SSFA2 Missense_Mutation p.S686F 0.30 deleterious(0) probably_damaging(0.999) TCGA-78-7166-01 2 183821252 183821252 T C NCKAP1 Silent p.V703V 0.27 TCGA-78-7166-01 2 201523986 201523986 G T AOX1 Silent p.V1090V 0.20 TCGA-78-7166-01 2 217541586 217541586 C T IGFBP5 Missense_Mutation p.R236H 0.21 deleterious(0) probably_damaging(0.969) TCGA-78-7166-01 2 218682911 218682936 CCCCAGGGTGCCGGCCCAGGCTGGGA - TNS1 Frame_Shift_Del p.P1270Sfs*11 0.30 TCGA-78-7166-01 2 233410476 233410476 T G CHRNG 3'UTR 0.26 TCGA-78-7166-01 2 234091102 234091102 C A INPP5D Silent p.A694A 0.22 TCGA-78-7166-01 2 234622463 234622463 A T UGT1A5 Missense_Mutation p.I276F 0.32 deleterious(0) probably_damaging(1) TCGA-78-7166-01 2 239049536 239049536 C G KLHL30 Missense_Mutation p.H47Q 0.32 deleterious(0) probably_damaging(1) TCGA-78-7166-01 2 3652050 3652050 T A COLEC11 Silent p.P54P 0.19 TCGA-78-7166-01 2 65540506 65540506 C A SPRED2 3'UTR 0.22 TCGA-78-7166-01 2 71791305 71791305 G A DYSF Missense_Mutation p.G843S 0.29 deleterious(0) probably_damaging(1) TCGA-78-7166-01 3 109049345 109049345 G C DPPA4 Intron 0.30 TCGA-78-7166-01 3 113212121 113212121 C A SPICE1 Missense_Mutation p.G142C 0.36 deleterious(0) possibly_damaging(0.785) TCGA-78-7166-01 3 124211723 124211723 G A KALRN Missense_Mutation p.S1607N 0.33 tolerated(0.13) benign(0.07) TCGA-78-7166-01 3 126915575 126915575 G T C3orf56 Missense_Mutation p.R16L 0.30 tolerated_low_confidence(0.47) benign(0) TCGA-78-7166-01 3 127823653 127823653 A C RUVBL1 Missense_Mutation p.I159R 0.31 deleterious(0) probably_damaging(0.954) TCGA-78-7166-01 3 147128353 147128353 G T ZIC1 Missense_Mutation p.G152C 0.25 tolerated(0.05) possibly_damaging(0.473) TCGA-78-7166-01 3 164767594 164767594 G C SI Missense_Mutation p.P528A 0.22 deleterious(0.01) probably_damaging(0.939) TCGA-78-7166-01 3 172058969 172058969 G T FNDC3B Missense_Mutation p.G640V 0.27 deleterious(0) probably_damaging(0.998) TCGA-78-7166-01 3 38628930 38628930 G T SCN5A Silent p.S799S 0.17 TCGA-78-7166-01 3 49067872 49067872 T C QRICH1 3'UTR 0.40 TCGA-78-7166-01 3 50006042 50006042 G T RBM6 Missense_Mutation p.G395V 0.29 deleterious(0.01) probably_damaging(1) TCGA-78-7166-01 4 106157551 106157551 C G TET2 Missense_Mutation p.P818A 0.08 tolerated(0.07) benign(0.092) TCGA-78-7166-01 4 109745365 109745365 C A COL25A1 Missense_Mutation p.G604C 0.22 deleterious(0) probably_damaging(1) TCGA-78-7166-01 4 1232123 1232123 C T CTBP1 Missense_Mutation p.V15I 0.29 tolerated_low_confidence(1) benign(0.001) TCGA-78-7166-01 4 123949440 123949440 G T SPATA5 Missense_Mutation p.G657C 0.25 deleterious(0) probably_damaging(0.976) TCGA-78-7166-01 4 143159166 143159166 T C INPP4B Splice_Site p.X230_splice 0.17 TCGA-78-7166-01 4 25262192 25262192 T A PI4K2B Nonsense_Mutation p.C319* 0.35 TCGA-78-7166-01 4 25262206 25262206 A C PI4K2B Missense_Mutation p.D324A 0.31 tolerated(0.24) benign(0.014) TCGA-78-7166-01 4 36109211 36109211 C T ARAP2 Missense_Mutation p.A1421T 0.27 tolerated(0.33) benign(0.001) TCGA-78-7166-01 4 55151611 55151611 C A PDGFRA Silent p.T799T 0.39 TCGA-78-7166-01 4 55155207 55155207 G T PDGFRA Nonsense_Mutation p.E936* 0.26 TCGA-78-7166-01 4 55981449 55981449 G T KDR Missense_Mutation p.A163E 0.33 deleterious(0.03) possibly_damaging(0.821) TCGA-78-7166-01 4 57272723 57272723 G A PPAT Missense_Mutation p.H114Y 0.05 tolerated(0.55) benign(0.08) TCGA-78-7166-01 4 57798155 57798155 G A REST Missense_Mutation p.R1044K 0.06 tolerated(0.73) benign(0.025) TCGA-78-7166-01 4 62599194 62599194 G T LPHN3 Missense_Mutation p.D373Y 0.28 deleterious(0) probably_damaging(1) TCGA-78-7166-01 4 71255676 71255676 C A SMR3B 3'UTR 0.31 TCGA-78-7166-01 4 87770045 87770045 T A SLC10A6 Missense_Mutation p.Q75L 0.28 deleterious(0) probably_damaging(0.999) TCGA-78-7166-01 5 118183864 118183864 G - DTWD2 Frame_Shift_Del p.P216Rfs*55 0.17 TCGA-78-7166-01 5 132159951 132159951 T C SHROOM1 Missense_Mutation p.S468G 0.29 tolerated(0.57) benign(0.077) TCGA-78-7166-01 5 13817654 13817654 T C DNAH5 Intron 0.23 TCGA-78-7166-01 5 140027460 140027460 C T IK 5'UTR 0.29 TCGA-78-7166-01 5 140209817 140209817 C A PCDHA6 Missense_Mutation p.T714K 0.22 deleterious_low_confidence(0) possibly_damaging(0.603) TCGA-78-7166-01 5 140264050 140264050 G T PCDHA13 Missense_Mutation p.A733S 0.24 deleterious_low_confidence(0.04) benign(0.004) TCGA-78-7166-01 5 140347559 140347559 G T PCDHAC2 Missense_Mutation p.G403V 0.19 deleterious(0.03) benign(0.063) TCGA-78-7166-01 5 140481682 140481682 C A PCDHB3 Missense_Mutation p.N483K 0.26 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-78-7166-01 5 140720462 140720462 C A PCDHGA2 Missense_Mutation p.L642I 0.32 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-78-7166-01 5 140769345 140769345 G T PCDHGB4 Missense_Mutation p.D632Y 0.33 deleterious(0.01) probably_damaging(0.991) TCGA-78-7166-01 5 141050083 141050083 C A ARAP3 Silent p.R701R 0.25 TCGA-78-7166-01 5 14601073 14601073 G C FAM105A Splice_Site p.X22_splice 0.38 TCGA-78-7166-01 5 150682934 150682934 G T SLC36A3 5'UTR 0.17 TCGA-78-7166-01 5 161128508 161128508 C A GABRA6 Missense_Mutation p.P364H 0.24 deleterious(0.01) possibly_damaging(0.459) TCGA-78-7166-01 5 23527675 23527675 C A PRDM9 Missense_Mutation p.H826Q 0.23 deleterious(0) probably_damaging(0.997) TCGA-78-7166-01 5 76249022 76249022 G A CRHBP Silent p.G21G 0.27 TCGA-78-7166-01 5 82835845 82835845 A T VCAN Silent p.A2341A 0.23 TCGA-78-7166-01 6 108193003 108193003 C - SEC63 Frame_Shift_Del p.D730Ifs*4 0.29 TCGA-78-7166-01 6 109762562 109762562 G A SMPD2 Missense_Mutation p.G18D 0.05 tolerated(0.3) possibly_damaging(0.658) TCGA-78-7166-01 6 117198593 117198593 A T RFX6 Missense_Mutation p.Q52L 0.25 tolerated_low_confidence(0.39) benign(0.033) TCGA-78-7166-01 6 128134635 128134635 G T THEMIS Missense_Mutation p.S384Y 0.30 deleterious(0) probably_damaging(0.977) TCGA-78-7166-01 6 25830792 25830792 C T SLC17A1 5'UTR 0.27 TCGA-78-7166-01 6 26413990 26413990 G T BTN3A1 3'UTR 0.18 TCGA-78-7166-01 6 32943871 32943871 T G BRD2 Missense_Mutation p.S179A 0.29 deleterious(0.01) benign(0.039) TCGA-78-7166-01 6 37138393 37138393 C T PIM1 Silent p.A14A 0.13 TCGA-78-7166-01 6 64394074 64394074 A G PHF3 Missense_Mutation p.N151D 0.29 deleterious(0) possibly_damaging(0.497) TCGA-78-7166-01 6 70070841 70070841 G T BAI3 Nonsense_Mutation p.E1226* 0.26 TCGA-78-7166-01 6 70831782 70831782 G T COL19A1 Missense_Mutation p.G430V 0.26 deleterious(0.02) unknown(0) TCGA-78-7166-01 6 83823102 83823102 G A DOPEY1 Missense_Mutation p.D248N 0.24 deleterious(0) probably_damaging(0.976) TCGA-78-7166-01 6 94066441 94066441 G T EPHA7 Missense_Mutation p.Q440K 0.31 deleterious(0.02) benign(0.085) TCGA-78-7166-01 7 100677722 100677722 G T MUC17 Missense_Mutation p.D1009Y 0.09 probably_damaging(0.995) TCGA-78-7166-01 7 100680018 100680018 T C MUC17 Missense_Mutation p.I1774T 0.29 benign(0.246) TCGA-78-7166-01 7 107752264 107752264 G T LAMB4 Missense_Mutation p.S107Y 0.24 deleterious(0) probably_damaging(0.989) TCGA-78-7166-01 7 123593796 123593796 G A SPAM1 Missense_Mutation p.E58K 0.21 deleterious(0.01) probably_damaging(0.981) TCGA-78-7166-01 7 127343309 127343309 C T SND1 Nonsense_Mutation p.Q258* 0.32 TCGA-78-7166-01 7 136588029 136588029 G T CHRM2 Intron 0.25 TCGA-78-7166-01 7 146829511 146829511 G T CNTNAP2 Missense_Mutation p.G420C 0.21 deleterious(0) probably_damaging(0.995) TCGA-78-7166-01 7 1538656 1538656 C A INTS1 Silent p.R364R 0.60 TCGA-78-7166-01 7 33313545 33313545 A T BBS9 Silent p.V331V 0.23 TCGA-78-7166-01 7 71175827 71175827 G T WBSCR17 Missense_Mutation p.V528L 0.22 deleterious(0.03) possibly_damaging(0.89) TCGA-78-7166-01 7 75511505 75511505 C T RHBDD2 Silent p.P179P 0.17 TCGA-78-7166-01 7 87912286 87912286 A G STEAP4 Silent p.C218C 0.35 TCGA-78-7166-01 7 89984398 89984398 A T GTPBP10 Splice_Site p.X107_splice 0.33 TCGA-78-7166-01 7 93116272 93116272 G A CALCR Missense_Mutation p.R26W 0.27 tolerated(0.21) benign(0.003) TCGA-78-7166-01 8 104388119 104388119 T C CTHRC1 Missense_Mutation p.W102R 0.32 tolerated(0.2) possibly_damaging(0.756) TCGA-78-7166-01 8 14095116 14095116 C A SGCZ Nonsense_Mutation p.G137* 0.27 TCGA-78-7166-01 8 145058713 145058713 C T PARP10 Missense_Mutation p.R486Q 0.39 tolerated(0.12) benign(0.011) TCGA-78-7166-01 8 25364831 25364831 G T CDCA2 Missense_Mutation p.R883S 0.26 tolerated(0.05) possibly_damaging(0.895) TCGA-78-7166-01 8 30705213 30705213 A T TEX15 Missense_Mutation p.Y441N 0.32 tolerated(0.28) benign(0.004) TCGA-78-7166-01 8 33310750 33310750 T G FUT10 Missense_Mutation p.K120N 0.31 deleterious(0.03) possibly_damaging(0.678) TCGA-78-7166-01 8 37823632 37823632 A T ADRB3 Missense_Mutation p.L119Q 0.39 deleterious(0) probably_damaging(1) TCGA-78-7166-01 8 41555583 41555583 A T ANK1 Missense_Mutation p.I913N 0.32 tolerated(0.07) benign(0.001) TCGA-78-7166-01 8 96272100 96272100 A C C8orf37 Missense_Mutation p.I114M 0.34 tolerated(0.06) benign(0.149) TCGA-78-7166-01 9 107361473 107361473 G T OR13C5 Silent p.T74T 0.31 TCGA-78-7166-01 9 107361474 107361474 G T OR13C5 Missense_Mutation p.T74N 0.31 deleterious(0) probably_damaging(0.997) TCGA-78-7166-01 9 113169975 113169975 C A SVEP1 Missense_Mutation p.E2635D 0.23 benign(0.001) TCGA-78-7166-01 9 119459954 119459954 C T TRIM32 5'UTR 0.33 TCGA-78-7166-01 9 125282323 125282323 G A OR1J4 Missense_Mutation p.E302K 0.27 tolerated_low_confidence(0.59) benign(0) TCGA-78-7166-01 9 126132529 126132529 C A CRB2 Silent p.G399G 0.40 TCGA-78-7166-01 9 131747255 131747255 A T NUP188 Missense_Mutation p.T680S 0.23 deleterious(0.01) probably_damaging(0.979) TCGA-78-7166-01 9 140954117 140954117 A T CACNA1B Missense_Mutation p.R1532S 0.30 deleterious(0) probably_damaging(0.968) TCGA-78-7166-01 9 19786488 19786488 G A SLC24A2 Missense_Mutation p.S126F 0.36 deleterious(0) probably_damaging(0.947) TCGA-78-7166-01 9 32631110 32631110 G A TAF1L Nonsense_Mutation p.Q1490* 0.27 TCGA-78-7166-01 9 33248442 33248442 C A SPINK4 Silent p.I78I 0.14 TCGA-78-7166-01 9 35722169 35722169 C A TLN1 Missense_Mutation p.V299L 0.33 deleterious(0.02) benign(0.033) TCGA-78-7166-01 9 79318531 79318531 G T PRUNE2 Silent p.L2666L 0.27 TCGA-78-7166-01 9 990397 990397 C A DMRT3 Missense_Mutation p.L271I 0.37 deleterious(0) probably_damaging(0.973) TCGA-78-7166-01 X 14038355 14038355 C T GEMIN8 Missense_Mutation p.R105K 0.36 tolerated(0.27) benign(0.007) TCGA-78-7166-01 X 3019232 3019232 C A ARSF Missense_Mutation p.Q358K 0.60 deleterious(0.02) benign(0.445) TCGA-78-7166-01 X 35966464 35966464 C A CXorf22 Missense_Mutation p.P184H 0.64 deleterious(0.01) probably_damaging(0.953) TCGA-78-7166-01 X 44918511 44918511 A T KDM6A Missense_Mutation p.N332Y 0.64 deleterious(0) probably_damaging(0.995) TCGA-78-7166-01 X 47028743 47028744 - T RBM10 Frame_Shift_Ins p.G17Wfs*4 0.47 TCGA-78-7166-01 X 49066115 49066115 C A CACNA1F Missense_Mutation p.A1610S 0.60 tolerated(0.72) benign(0) TCGA-78-7166-01 X 63445215 63445215 C T ASB12 Missense_Mutation p.A106T 0.23 deleterious(0) probably_damaging(0.997) TCGA-78-7166-01 X 73067641 73067641 G T XIST RNA 0.52 TCGA-78-7166-01 X 91131959 91131959 T C PCDH11X Silent p.T240T 0.53 TCGA-78-7166-01 Y 6954409 6954409 C T TBL1Y Missense_Mutation p.P411S 0.71 deleterious(0.01) probably_damaging(1) TCGA-78-7167-01 10 102296366 102296366 C A HIF1AN Missense_Mutation p.H126N 0.20 tolerated(0.42) benign(0) TCGA-78-7167-01 10 118357378 118357378 G A PNLIPRP1 Missense_Mutation p.E205K 0.28 tolerated(0.37) benign(0.081) TCGA-78-7167-01 10 134898538 134898538 G T GPR123 5'Flank 0.17 TCGA-78-7167-01 10 45652393 45652393 C A RP11-445N18.7 RNA 0.68 TCGA-78-7167-01 10 70227879 70227879 C T DNA2 Splice_Site p.X233_splice 0.18 TCGA-78-7167-01 11 10514898 10514898 G A AMPD3 Silent p.V323V 0.18 TCGA-78-7167-01 11 134079318 134079318 C A NCAPD3 Silent p.R207R 0.50 TCGA-78-7167-01 11 15134098 15134098 G T INSC Missense_Mutation p.R28M 0.43 deleterious_low_confidence(0) benign(0.062) TCGA-78-7167-01 11 15197423 15197423 G T INSC Missense_Mutation p.A112S 0.45 tolerated(1) benign(0.007) TCGA-78-7167-01 11 3988901 3988901 G C STIM1 Missense_Mutation p.E87Q 0.19 deleterious(0) probably_damaging(0.994) TCGA-78-7167-01 11 47345827 47345827 G A MADD Silent p.L1518L 0.20 TCGA-78-7167-01 11 49598251 49598251 A T RP11-707M1.1 RNA 0.46 TCGA-78-7167-01 11 55872752 55872752 C T OR8H2 Silent p.V78V 0.20 TCGA-78-7167-01 11 63668529 63668529 C G MARK2 Nonsense_Mutation p.Y363* 0.58 TCGA-78-7167-01 11 63996792 63996792 G A NUDT22 Missense_Mutation p.R218Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-78-7167-01 11 89935685 89935685 G C CHORDC1 Missense_Mutation p.T296S 0.50 tolerated(0.19) benign(0.06) TCGA-78-7167-01 11 92088256 92088256 G T FAT3 Missense_Mutation p.R993L 0.38 probably_damaging(1) TCGA-78-7167-01 11 92534129 92534129 C T FAT3 Silent p.L2650L 0.44 TCGA-78-7167-01 12 10010225 10010225 G A CLEC2B Nonsense_Mutation p.R29* 0.25 TCGA-78-7167-01 12 109671560 109671560 G C ACACB Missense_Mutation p.D1383H 0.35 deleterious(0.02) probably_damaging(0.983) TCGA-78-7167-01 12 110236638 110236638 C A TRPV4 Missense_Mutation p.K311N 0.17 tolerated(0.07) possibly_damaging(0.493) TCGA-78-7167-01 12 113633461 113633461 C G IQCD Missense_Mutation p.K321N 0.30 deleterious_low_confidence(0.01) unknown(0) TCGA-78-7167-01 12 130184743 130184743 C A TMEM132D Missense_Mutation p.A194S 0.34 deleterious(0) probably_damaging(0.996) TCGA-78-7167-01 12 13153119 13153119 C T HEBP1 5'UTR 0.33 TCGA-78-7167-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.34 deleterious(0) possibly_damaging(0.479) TCGA-78-7167-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.33 deleterious(0.04) probably_damaging(0.993) TCGA-78-7167-01 12 40258639 40258639 G A SLC2A13 Missense_Mutation p.S415L 0.21 tolerated(0.08) benign(0.196) TCGA-78-7167-01 12 66152274 66152274 G A RPSAP52 RNA 0.23 TCGA-78-7167-01 12 72057061 72057061 G A ZFC3H1 Silent p.F110F 0.12 TCGA-78-7167-01 13 114138335 114138335 G A DCUN1D2 Nonsense_Mutation p.Q14* 0.24 TCGA-78-7167-01 13 32912197 32912197 A G BRCA2 Silent p.Q1235Q 0.23 TCGA-78-7167-01 13 46054349 46054349 T C COG3 Missense_Mutation p.L158S 0.25 deleterious(0) probably_damaging(0.998) TCGA-78-7167-01 13 46358015 46358015 A G SIAH3 Missense_Mutation p.C105R 0.11 deleterious(0.01) unknown(0) TCGA-78-7167-01 13 52325503 52325503 C T WDFY2 Silent p.G261G 0.19 TCGA-78-7167-01 14 21862131 21862131 C A CHD8 Silent p.G1941G 0.44 TCGA-78-7167-01 14 31344261 31344261 G C COCH Splice_Site p.X12_splice 0.29 TCGA-78-7167-01 14 44974569 44974569 T C FSCB Missense_Mutation p.E541G 0.13 deleterious(0.01) possibly_damaging(0.486) TCGA-78-7167-01 14 69256498 69256498 C T ZFP36L1 Missense_Mutation p.E257K 0.14 deleterious(0.04) possibly_damaging(0.463) TCGA-78-7167-01 14 74035886 74035886 C G ACOT2 5'UTR 0.24 TCGA-78-7167-01 15 23811531 23811531 C A MKRN3 Missense_Mutation p.A201E 0.33 tolerated(0.27) benign(0.001) TCGA-78-7167-01 15 34137093 34137093 G A RYR3 Missense_Mutation p.E4443K 0.18 benign(0.07) TCGA-78-7167-01 15 35084379 35084379 C T ACTC1 Silent p.K240K 0.61 TCGA-78-7167-01 15 51291271 51291271 G T AP4E1 Silent p.V969V 0.62 TCGA-78-7167-01 15 52505478 52505478 C T MYO5C Missense_Mutation p.D1350N 0.26 tolerated(0.33) benign(0.002) TCGA-78-7167-01 15 56974516 56974516 C A ZNF280D Nonsense_Mutation p.E314* 0.26 TCGA-78-7167-01 15 59964843 59964843 G C BNIP2 Missense_Mutation p.L311V 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-78-7167-01 15 74426032 74426032 C A ISLR2 Missense_Mutation p.Q313K 0.29 tolerated(0.35) benign(0.016) TCGA-78-7167-01 15 85326540 85326540 T - ZNF592 Frame_Shift_Del p.L212Wfs*63 0.24 TCGA-78-7167-01 16 20331704 20331704 C T GP2 Silent p.G249G 0.56 TCGA-78-7167-01 16 28507282 28507282 G T APOBR Missense_Mutation p.G307V 0.50 tolerated(0.33) benign(0.024) TCGA-78-7167-01 16 48261771 48261771 T A ABCC11 Missense_Mutation p.E114V 0.22 tolerated(0.54) benign(0.016) TCGA-78-7167-01 16 5110370 5110370 G C C16orf89 Silent p.S142S 0.22 TCGA-78-7167-01 16 51176048 51176048 C T SALL1 Missense_Mutation p.E29K 0.27 deleterious(0.03) benign(0.146) TCGA-78-7167-01 16 67863987 67863987 A G CENPT Silent p.P289P 0.07 TCGA-78-7167-01 16 728016 728016 C T RHBDL1 Silent p.Y427Y 0.21 TCGA-78-7167-01 17 11593309 11593309 G A DNAH9 Missense_Mutation p.M1390I 0.10 benign(0.257) TCGA-78-7167-01 17 17801988 17801988 C T TOM1L2 Silent p.G46G 0.20 TCGA-78-7167-01 17 19287986 19287986 G A MFAP4 Missense_Mutation p.S210F 0.16 deleterious(0) probably_damaging(0.997) TCGA-78-7167-01 17 42429603 42429603 G A GRN Missense_Mutation p.C467Y 0.24 deleterious(0) probably_damaging(0.982) TCGA-78-7167-01 17 55951069 55951069 C T CUEDC1 Silent p.A158A 0.41 TCGA-78-7167-01 17 6380393 6380393 G A PITPNM3 Silent p.T347T 0.52 TCGA-78-7167-01 17 79428098 79428098 G T RP11-1055B8.7 Missense_Mutation p.A2137S 0.35 benign(0.36) TCGA-78-7167-01 18 18549153 18549153 C T ROCK1 Missense_Mutation p.S946N 0.29 tolerated(0.37) benign(0.001) TCGA-78-7167-01 18 30926187 30926187 C A CCDC178 Missense_Mutation p.A216S 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-78-7167-01 18 70526237 70526237 A C NETO1 Missense_Mutation p.F98C 0.22 deleterious(0) probably_damaging(0.999) TCGA-78-7167-01 19 10600417 10600417 C A KEAP1 Missense_Mutation p.G480W 0.82 deleterious(0) probably_damaging(1) TCGA-78-7167-01 19 14512314 14512314 G C CD97 Missense_Mutation p.M338I 0.44 deleterious(0) benign(0.002) TCGA-78-7167-01 19 31025821 31025821 G T ZNF536 Silent p.L746L 0.27 TCGA-78-7167-01 19 38704372 38704372 G T DPF1 Missense_Mutation p.T335K 0.48 deleterious(0) probably_damaging(0.953) TCGA-78-7167-01 19 38946176 38946176 G T RYR1 Missense_Mutation p.E554D 0.28 probably_damaging(0.996) TCGA-78-7167-01 19 38951198 38951198 C T RYR1 Silent p.T848T 0.31 TCGA-78-7167-01 19 42507532 42507532 C T GRIK5 Silent p.A822A 0.60 TCGA-78-7167-01 19 4312015 4312015 G T FSD1 Nonsense_Mutation p.E223* 0.77 TCGA-78-7167-01 19 4428734 4428734 G A CHAF1A Missense_Mutation p.R484Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-78-7167-01 19 49143455 49143455 G T CA11 Missense_Mutation p.P123H 0.29 deleterious(0.02) possibly_damaging(0.699) TCGA-78-7167-01 19 53794370 53794370 A G BIRC8 5'UTR 0.20 TCGA-78-7167-01 19 54598591 54598591 G A OSCAR 3'UTR 0.50 TCGA-78-7167-01 19 55014063 55014063 C A LAIR2 5'UTR 0.60 TCGA-78-7167-01 19 813107 813107 G A LPPR3 Silent p.I568I 0.56 TCGA-78-7167-01 1 142713482 142713482 T A RP11-417J8.6 RNA 0.33 TCGA-78-7167-01 1 1464630 1464630 C T ATAD3A Silent p.Y559Y 0.29 TCGA-78-7167-01 1 152080436 152080436 C G TCHH Missense_Mutation p.E1753Q 0.22 unknown(0) TCGA-78-7167-01 1 160012237 160012237 C T KCNJ10 Missense_Mutation p.R29K 0.12 deleterious(0) probably_damaging(0.997) TCGA-78-7167-01 1 175116204 175116204 C T TNN Silent p.F1299F 0.25 TCGA-78-7167-01 1 176762762 176762762 C G PAPPA2 Missense_Mutation p.T1696S 0.35 deleterious(0.05) probably_damaging(0.997) TCGA-78-7167-01 1 181695248 181695248 G T CACNA1E Missense_Mutation p.Q730H 0.57 deleterious(0.01) benign(0.216) TCGA-78-7167-01 1 19632530 19632530 G C AKR7A2 Nonsense_Mutation p.Y300* 0.43 TCGA-78-7167-01 1 220363423 220363423 G T RAB3GAP2 Missense_Mutation p.T566K 0.16 tolerated(0.78) benign(0.006) TCGA-78-7167-01 1 231362496 231362496 C T C1orf131 Missense_Mutation p.E228K 0.12 tolerated(0.07) probably_damaging(0.928) TCGA-78-7167-01 1 24392318 24392318 C G MYOM3 Intron 0.30 TCGA-78-7167-01 1 247013838 247013838 C A AHCTF1 Nonsense_Mutation p.E1833* 0.23 TCGA-78-7167-01 1 27092806 27092806 C A ARID1A Missense_Mutation p.P943T 0.29 unknown(0) TCGA-78-7167-01 1 28559429 28559429 C T DNAJC8 Intron 0.24 TCGA-78-7167-01 1 84417596 84417596 C A TTLL7 Missense_Mutation p.R30M 0.20 deleterious(0) possibly_damaging(0.493) TCGA-78-7167-01 20 57415891 57415891 C T RP4-806M20.3 5'Flank 0.24 TCGA-78-7167-01 20 62317196 62317196 C T RTEL1 Missense_Mutation p.A464V 0.23 tolerated(1) benign(0.008) TCGA-78-7167-01 22 26422575 26422575 C A MYO18B Missense_Mutation p.A2212D 0.71 tolerated(0.26) benign(0.002) TCGA-78-7167-01 22 26422576 26422576 C T MYO18B Silent p.A2212A 0.71 TCGA-78-7167-01 22 26995528 26995528 G T CRYBB1 Missense_Mutation p.L229M 0.87 tolerated(0.13) benign(0.044) TCGA-78-7167-01 2 125261950 125261950 C T CNTNAP5 Missense_Mutation p.P381S 0.15 deleterious(0.02) possibly_damaging(0.78) TCGA-78-7167-01 2 141093378 141093378 A G LRP1B Silent p.I3974I 0.13 TCGA-78-7167-01 2 170134283 170134283 C G LRP2 Missense_Mutation p.E582Q 0.10 probably_damaging(0.96) TCGA-78-7167-01 2 192257825 192257825 G T MYO1B Missense_Mutation p.K701N 0.16 tolerated(0.07) possibly_damaging(0.501) TCGA-78-7167-01 2 21228441 21228441 C T APOB Missense_Mutation p.E3767K 0.18 benign(0.119) TCGA-78-7167-01 3 100174852 100174852 G T LNP1 3'UTR 0.28 TCGA-78-7167-01 3 122865026 122865026 G A PDIA5 Silent p.T354T 0.27 TCGA-78-7167-01 3 123247306 123247306 G C PTPLB Missense_Mutation p.S103C 0.25 deleterious(0) probably_damaging(0.979) TCGA-78-7167-01 3 124731518 124731519 - A HEG1 Frame_Shift_Ins p.A969Cfs*53 0.30 TCGA-78-7167-01 3 127842496 127842496 C T RUVBL1 Silent p.L24L 0.32 TCGA-78-7167-01 3 142037437 142037437 T A XRN1 Missense_Mutation p.T1539S 0.38 tolerated_low_confidence(0.94) benign(0.003) TCGA-78-7167-01 3 150459956 150459956 T C SIAH2 Missense_Mutation p.N316S 0.25 deleterious(0.03) benign(0.401) TCGA-78-7167-01 3 161147188 161147188 G C RP11-3P17.4 RNA 0.16 TCGA-78-7167-01 3 17446369 17446369 C T TBC1D5 Missense_Mutation p.E121K 0.42 deleterious(0.01) probably_damaging(0.932) TCGA-78-7167-01 3 191888341 191888341 C T FGF12 Nonsense_Mutation p.W173* 0.17 TCGA-78-7167-01 3 23631271 23631271 A C UBE2E2 Missense_Mutation p.R185S 0.15 deleterious(0) probably_damaging(0.982) TCGA-78-7167-01 3 31710172 31710172 C A OSBPL10 Missense_Mutation p.K686N 0.26 deleterious(0.02) possibly_damaging(0.9) TCGA-78-7167-01 3 42680794 42680794 A T NKTR Missense_Mutation p.S1200C 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.712) TCGA-78-7167-01 3 44541883 44541883 C G ZNF852 Missense_Mutation p.R129T 0.05 tolerated(0.15) benign(0.023) TCGA-78-7167-01 3 95374215 95374215 G C MTHFD2P1 RNA 0.67 TCGA-78-7167-01 4 10083005 10083005 G A WDR1 Silent p.Y420Y 0.17 TCGA-78-7167-01 4 37962391 37962402 AGAAATAGAAAA - PTTG2 In_Frame_Del p.E113_K116del 0.27 TCGA-78-7167-01 4 56230251 56230251 G A SRD5A3 Silent p.L125L 0.25 TCGA-78-7167-01 4 5624431 5624431 C T EVC2 Silent p.E778E 0.20 TCGA-78-7167-01 4 68472042 68472042 T A STAP1 Missense_Mutation p.S285R 0.31 tolerated(0.67) benign(0) TCGA-78-7167-01 4 68956241 68956241 C A TMPRSS11F Missense_Mutation p.M94I 0.61 deleterious(0.03) probably_damaging(0.985) TCGA-78-7167-01 5 134724792 134724792 C - H2AFY 5'UTR 0.15 TCGA-78-7167-01 5 140167837 140167837 C T PCDHA1 Silent p.H654H 0.27 TCGA-78-7167-01 5 140711266 140711266 G T PCDHGA1 Missense_Mutation p.D339Y 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-78-7167-01 5 19473166 19473166 C G CDH18 3'UTR 0.62 TCGA-78-7167-01 5 36953763 36953763 G T NIPBL 5'UTR 0.47 TCGA-78-7167-01 5 45645442 45645442 C A HCN1 Missense_Mutation p.V232L 0.41 tolerated(0.21) probably_damaging(0.992) TCGA-78-7167-01 5 78697723 78697723 C T HOMER1 Missense_Mutation p.R228Q 0.21 tolerated(0.55) benign(0.015) TCGA-78-7167-01 6 106547325 106547325 A C PRDM1 Missense_Mutation p.K188Q 0.35 deleterious(0.01) probably_damaging(0.972) TCGA-78-7167-01 6 138584148 138584148 G A KIAA1244 Missense_Mutation p.D510N 0.62 tolerated(0.13) possibly_damaging(0.881) TCGA-78-7167-01 6 147680300 147680300 G A STXBP5 Missense_Mutation p.A796T 0.38 tolerated(0.37) benign(0.002) TCGA-78-7167-01 6 165713903 165713903 C A C6orf118 Missense_Mutation p.D276Y 0.71 deleterious(0) probably_damaging(0.995) TCGA-78-7167-01 6 167550348 167550348 G A CCR6 Nonsense_Mutation p.W210* 0.34 TCGA-78-7167-01 6 55926451 55926451 C A COL21A1 Missense_Mutation p.G734V 0.18 deleterious(0) probably_damaging(0.993) TCGA-78-7167-01 6 56391233 56391233 G A DST Missense_Mutation p.R3396C 0.15 probably_damaging(0.979) TCGA-78-7167-01 6 66063424 66063424 T A EYS Silent p.G462G 0.19 TCGA-78-7167-01 7 100174326 100174326 T C LRCH4 Missense_Mutation p.S515G 0.50 tolerated(0.18) benign(0.006) TCGA-78-7167-01 7 110762783 110762783 G A LRRN3 5'UTR 0.21 TCGA-78-7167-01 7 4247749 4247749 G C SDK1 Missense_Mutation p.D1745H 0.12 deleterious(0.01) benign(0.039) TCGA-78-7167-01 7 5086023 5086023 G T RBAK 5'UTR 0.15 TCGA-78-7167-01 7 88964545 88964545 T C ZNF804B Missense_Mutation p.V750A 0.19 tolerated(0.98) benign(0.006) TCGA-78-7167-01 8 117782546 117782546 G C UTP23 Missense_Mutation p.E102Q 0.08 tolerated(0.26) benign(0.016) TCGA-78-7167-01 8 144671194 144671194 C A EEF1D Missense_Mutation p.R353L 0.52 tolerated(0.16) benign(0.124) TCGA-78-7167-01 8 17554870 17554870 T A MTUS1 Intron 0.31 TCGA-78-7167-01 8 59329441 59329441 G A UBXN2B Silent p.V39V 0.12 TCGA-78-7167-01 8 72234058 72234067 CCATATGCAG - EYA1 Frame_Shift_Del p.A107Gfs*131 0.20 TCGA-78-7167-01 8 99120937 99120937 C G HRSP12 Missense_Mutation p.Q36H 0.15 deleterious(0) probably_damaging(0.999) TCGA-78-7167-01 9 106864469 106864469 G C SMC2 Missense_Mutation p.D289H 0.24 deleterious(0) possibly_damaging(0.486) TCGA-78-7167-01 9 125315631 125315631 C T OR1N2 Silent p.L61L 0.30 TCGA-78-7167-01 9 125391523 125391523 G A OR1B1 Missense_Mutation p.R98C 0.35 tolerated(0.05) benign(0.002) TCGA-78-7167-01 9 125563287 125563287 C A OR1K1 Missense_Mutation p.R296S 0.41 tolerated(0.06) benign(0.042) TCGA-78-7167-01 9 139617467 139617467 C G FAM69B Silent p.L179L 0.34 TCGA-78-7167-01 9 32635343 32635343 C T TAF1L Missense_Mutation p.E79K 0.38 deleterious(0) probably_damaging(0.973) TCGA-78-7167-01 9 91041471 91041471 G T SPIN1 Missense_Mutation p.G6V 0.30 tolerated_low_confidence(0.12) benign(0.116) TCGA-78-7167-01 X 215942 215942 C T PLCXD1 Silent p.I304I 0.20 TCGA-78-7220-01 10 103870648 103870648 C G LDB1 Silent p.L110L 0.43 TCGA-78-7220-01 10 103919189 103919189 G T NOLC1 Splice_Site p.X242_splice 0.49 TCGA-78-7220-01 10 104183901 104183901 A T CUEDC2 Missense_Mutation p.V149E 0.38 tolerated(0.09) possibly_damaging(0.901) TCGA-78-7220-01 10 104241929 104241929 C A ACTR1A Missense_Mutation p.G252C 0.38 deleterious(0) probably_damaging(1) TCGA-78-7220-01 10 104678932 104678932 C G CNNM2 Missense_Mutation p.T232S 0.32 tolerated(0.55) benign(0.009) TCGA-78-7220-01 10 106113540 106113540 C G CCDC147 5'UTR 0.30 TCGA-78-7220-01 10 108412239 108412239 G C SORCS1 Missense_Mutation p.C792W 0.29 deleterious(0) probably_damaging(0.985) TCGA-78-7220-01 10 108469029 108469029 G A SORCS1 Silent p.Y365Y 0.12 TCGA-78-7220-01 10 115950746 115950746 G A TDRD1 Missense_Mutation p.E118K 0.37 tolerated(0.28) benign(0.016) TCGA-78-7220-01 10 117486792 117486792 G T ATRNL1 Missense_Mutation p.R1277L 0.28 deleterious(0) possibly_damaging(0.716) TCGA-78-7220-01 10 118236776 118236776 C G PNLIPRP3 3'UTR 0.40 TCGA-78-7220-01 10 120070350 120070350 C T FAM204A 3'UTR 0.13 TCGA-78-7220-01 10 120936609 120936609 C A PRDX3 Missense_Mutation p.R31S 0.45 tolerated_low_confidence(0.15) benign(0.004) TCGA-78-7220-01 10 120936610 120936610 C A PRDX3 Missense_Mutation p.R31M 0.46 deleterious_low_confidence(0.02) benign(0.017) TCGA-78-7220-01 10 122273442 122273442 C A PPAPDC1A Missense_Mutation p.P62H 0.24 deleterious(0) probably_damaging(0.97) TCGA-78-7220-01 10 124907807 124907807 C A HMX2 5'UTR 0.50 TCGA-78-7220-01 10 132965084 132965084 G T TCERG1L Missense_Mutation p.S307R 0.39 tolerated(0.22) benign(0.03) TCGA-78-7220-01 10 134906624 134906624 G C GPR123 Intron 0.55 TCGA-78-7220-01 10 135237149 135237149 G T SPRN Missense_Mutation p.L13M 0.47 deleterious(0.01) possibly_damaging(0.82) TCGA-78-7220-01 10 16970194 16970194 C T CUBN Missense_Mutation p.S2078N 0.53 deleterious(0) probably_damaging(0.976) TCGA-78-7220-01 10 21147230 21147230 G A NEBL Missense_Mutation p.S281L 0.19 deleterious(0.01) benign(0.387) TCGA-78-7220-01 10 26357812 26357812 A C MYO3A Missense_Mutation p.K390T 0.67 deleterious(0.02) benign(0.027) TCGA-78-7220-01 10 55582747 55582747 A - PCDH15 Frame_Shift_Del p.L1582Yfs*5 0.12 TCGA-78-7220-01 10 70516189 70516189 G A CCAR1 Silent p.Q595Q 0.28 TCGA-78-7220-01 10 71682461 71682461 C T COL13A1 Intron 0.33 TCGA-78-7220-01 10 72298649 72298649 G A PALD1 Missense_Mutation p.R485Q 0.19 tolerated(0.37) benign(0.065) TCGA-78-7220-01 10 73559326 73559326 T A CDH23 Missense_Mutation p.F194L 0.23 deleterious(0.02) benign(0.07) TCGA-78-7220-01 10 75114533 75114533 C G TTC18 Missense_Mutation p.G8R 0.23 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-78-7220-01 10 75552552 75552552 G T ZSWIM8 Missense_Mutation p.G752V 0.18 tolerated(0.18) benign(0.215) TCGA-78-7220-01 10 76990703 76990703 G T VDAC2 Missense_Mutation p.A296S 0.24 tolerated(0.17) benign(0.011) TCGA-78-7220-01 10 7708776 7708776 G A ITIH5 Missense_Mutation p.S27F 0.63 tolerated(0.72) benign(0.003) TCGA-78-7220-01 10 7708935 7708935 G A ITIH5 5'Flank 0.57 TCGA-78-7220-01 10 77159440 77159440 C G ZNF503 Silent p.L336L 0.50 TCGA-78-7220-01 10 81058316 81058316 A C ZMIZ1 Missense_Mutation p.S549R 0.25 benign(0.016) TCGA-78-7220-01 10 82363483 82363483 G A SH2D4B Silent p.E264E 0.31 TCGA-78-7220-01 10 88702633 88702633 C G MMRN2 Missense_Mutation p.Q636H 0.20 tolerated(0.05) benign(0.21) TCGA-78-7220-01 10 90438201 90438201 G T LIPF Splice_Site p.X331_splice 0.38 TCGA-78-7220-01 10 95335924 95335924 A G FFAR4 Missense_Mutation p.N215S 0.31 tolerated(0.44) benign(0.098) TCGA-78-7220-01 10 95395261 95395261 C T PDE6C Missense_Mutation p.T426I 0.40 deleterious(0.04) probably_damaging(0.998) TCGA-78-7220-01 10 95660993 95660993 G T SLC35G1 Missense_Mutation p.G282W 0.31 deleterious(0) probably_damaging(0.999) TCGA-78-7220-01 10 96540286 96540286 G T CYP2C19 Missense_Mutation p.G171V 0.37 tolerated(0.05) possibly_damaging(0.816) TCGA-78-7220-01 10 98170166 98170166 G T TLL2 Missense_Mutation p.P372T 0.40 deleterious(0.03) possibly_damaging(0.878) TCGA-78-7220-01 10 99967980 99967980 G A R3HCC1L Missense_Mutation p.E37K 0.27 tolerated(0.13) possibly_damaging(0.904) TCGA-78-7220-01 11 10019821 10019821 G C SBF2 Missense_Mutation p.L323V 0.24 deleterious(0) possibly_damaging(0.903) TCGA-78-7220-01 11 102745637 102745637 C T MMP12 RNA 0.47 TCGA-78-7220-01 11 104905107 104905107 C T CASP1 Silent p.V34V 0.50 TCGA-78-7220-01 11 105623944 105623944 G - GRIA4 Frame_Shift_Del 0.18 TCGA-78-7220-01 11 108535976 108535976 C T DDX10 Silent p.N32N 0.61 TCGA-78-7220-01 11 1093895 1093895 C T MUC2 Missense_Mutation p.T1905I 0.36 unknown(0) TCGA-78-7220-01 11 1100993 1100993 G A MUC2 Splice_Site p.X2465_splice 0.41 TCGA-78-7220-01 11 116658729 116658729 C A ZNF259 5'UTR 0.75 TCGA-78-7220-01 11 117246440 117246440 G A CEP164 Missense_Mutation p.S417N 0.56 deleterious(0.03) benign(0.036) TCGA-78-7220-01 11 118948776 118948776 G T VPS11 Missense_Mutation p.R586S 0.62 tolerated(0.14) benign(0.075) TCGA-78-7220-01 11 1217626 1217626 C T MUC5AC RNA 0.24 TCGA-78-7220-01 11 123811173 123811173 C A OR4D5 Missense_Mutation p.P284T 0.61 deleterious(0) probably_damaging(0.996) TCGA-78-7220-01 11 1629477 1629477 A - KRTAP5-3 Frame_Shift_Del p.C47Afs*219 0.25 TCGA-78-7220-01 11 17428910 17428910 C A ABCC8 Nonsense_Mutation p.E971* 0.31 TCGA-78-7220-01 11 17522697 17522697 C G USH1C Missense_Mutation p.E761Q 0.40 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-78-7220-01 11 18028149 18028149 A G SERGEF Missense_Mutation p.I114T 0.29 deleterious(0) possibly_damaging(0.833) TCGA-78-7220-01 11 212638 212638 G A RIC8A Silent p.V369V 0.29 TCGA-78-7220-01 11 2170549 2170549 T A INS-IGF2 Missense_Mutation p.T72S 0.30 tolerated_low_confidence(1) possibly_damaging(0.801) TCGA-78-7220-01 11 22397613 22397613 G A SLC17A6 Silent p.V420V 0.27 TCGA-78-7220-01 11 27393872 27393872 C T LGR4 Missense_Mutation p.E485K 0.32 tolerated(0.07) benign(0.004) TCGA-78-7220-01 11 28318426 28318426 A G METTL15 Silent p.A242A 0.21 TCGA-78-7220-01 11 30255208 30255208 G T FSHB Missense_Mutation p.C84F 0.37 deleterious(0.01) probably_damaging(1) TCGA-78-7220-01 11 30937253 30937253 G T DCDC1 Nonsense_Mutation p.S1153* 0.39 TCGA-78-7220-01 11 31329214 31329214 G T DCDC1 Missense_Mutation p.P136T 0.33 deleterious(0.04) probably_damaging(0.991) TCGA-78-7220-01 11 3381449 3381449 C G ZNF195 Missense_Mutation p.Q263H 0.33 deleterious(0) probably_damaging(0.991) TCGA-78-7220-01 11 34104422 34104422 G A CAPRIN1 Missense_Mutation p.E293K 0.24 deleterious(0.01) possibly_damaging(0.632) TCGA-78-7220-01 11 35641145 35641145 C T FJX1 Missense_Mutation p.R321C 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-78-7220-01 11 3707286 3707286 T C NUP98 Silent p.L1531L 0.15 TCGA-78-7220-01 11 47350770 47350770 G T MADD 3'UTR 0.31 TCGA-78-7220-01 11 47470561 47470561 C T RAPSN 5'UTR 0.08 TCGA-78-7220-01 11 4903989 4903989 C G OR51T1 Missense_Mutation p.P314R 0.22 deleterious(0) probably_damaging(1) TCGA-78-7220-01 11 5461917 5461917 G T OR51I1 Silent p.V276V 0.27 TCGA-78-7220-01 11 55032460 55032460 C G TRIM48 Silent p.T43T 0.34 TCGA-78-7220-01 11 55418547 55418547 C G OR4S2 Silent p.P56P 0.54 TCGA-78-7220-01 11 55433244 55433244 G T OR4C6 Missense_Mutation p.S201I 0.40 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-78-7220-01 11 55540950 55540950 A T OR5D13 Missense_Mutation p.T13S 0.31 tolerated(0.1) benign(0.04) TCGA-78-7220-01 11 55579307 55579307 G T OR5L1 Missense_Mutation p.R122L 0.43 deleterious(0) possibly_damaging(0.519) TCGA-78-7220-01 11 55607106 55607106 T A OR5D16 Missense_Mutation p.S293R 0.31 deleterious(0) probably_damaging(0.953) TCGA-78-7220-01 11 55653315 55653315 G T TRIM51 Silent p.R137R 0.19 TCGA-78-7220-01 11 55703191 55703191 T A OR5I1 Missense_Mutation p.K229M 0.16 deleterious(0) probably_damaging(0.916) TCGA-78-7220-01 11 55735381 55735381 C T OR10AG1 Missense_Mutation p.E187K 0.24 deleterious(0.03) benign(0.375) TCGA-78-7220-01 11 55798308 55798308 G T OR5AS1 Missense_Mutation p.R138S 0.41 tolerated(0.25) benign(0.021) TCGA-78-7220-01 11 55890481 55890481 T G OR8H3 Silent p.L211L 0.17 TCGA-78-7220-01 11 5602464 5602464 C A OR52B6 Missense_Mutation p.Q120K 0.36 deleterious(0) probably_damaging(0.952) TCGA-78-7220-01 11 56185013 56185013 C A OR5R1 Missense_Mutation p.Q232H 0.29 deleterious(0) possibly_damaging(0.83) TCGA-78-7220-01 11 58035302 58035302 G A OR10W1 Missense_Mutation p.S10F 0.35 tolerated(0.15) benign(0.024) TCGA-78-7220-01 11 58602206 58602206 C T GLYATL2 Missense_Mutation p.R194H 0.14 tolerated(0.11) benign(0.013) TCGA-78-7220-01 11 5862774 5862774 C G OR52E6 Silent p.V118V 0.35 TCGA-78-7220-01 11 5968957 5968957 T C OR56A3 Silent p.Y127Y 0.36 TCGA-78-7220-01 11 59947358 59947358 G C MS4A6A Silent p.T104T 0.25 TCGA-78-7220-01 11 61044097 61044097 G A VWCE Missense_Mutation p.P488L 0.30 deleterious(0.03) benign(0.004) TCGA-78-7220-01 11 61295597 61295597 G T SYT7 Silent p.R213R 0.25 TCGA-78-7220-01 11 61404715 61404715 C G RPLP0P2 RNA 0.44 TCGA-78-7220-01 11 61630533 61630533 C A FADS2 Missense_Mutation p.N324K 0.24 tolerated(0.19) benign(0.009) TCGA-78-7220-01 11 6281185 6281185 C A CCKBR Missense_Mutation p.S9R 0.33 deleterious_low_confidence(0) benign(0.289) TCGA-78-7220-01 11 64135637 64135637 G T RPS6KA4 Missense_Mutation p.D369Y 0.41 deleterious(0.01) benign(0.37) TCGA-78-7220-01 11 64599136 64599136 C A CDC42BPG Nonsense_Mutation p.E1049* 0.41 TCGA-78-7220-01 11 65271209 65271209 C T MALAT1 RNA 0.14 TCGA-78-7220-01 11 65273562 65273562 C T MALAT1 RNA 0.12 TCGA-78-7220-01 11 65273691 65273691 C A MALAT1 RNA 0.15 TCGA-78-7220-01 11 65823021 65823021 C T SF3B2 Silent p.L172L 0.23 TCGA-78-7220-01 11 67164943 67164943 A C RAD9A Silent p.S363S 0.16 TCGA-78-7220-01 11 6867304 6867304 T A OR10A5 Missense_Mutation p.L131M 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-78-7220-01 11 6942918 6942918 T A OR2D3 Missense_Mutation p.L229Q 0.16 deleterious(0) probably_damaging(0.952) TCGA-78-7220-01 11 6953824 6953824 G A ZNF215 Nonsense_Mutation p.W107* 0.35 TCGA-78-7220-01 11 71150017 71150017 C A DHCR7 Missense_Mutation p.A247S 0.15 deleterious(0.03) possibly_damaging(0.514) TCGA-78-7220-01 11 71249243 71249243 T A KRTAP5-8 Missense_Mutation p.S48T 0.17 tolerated_low_confidence(0.23) unknown(0) TCGA-78-7220-01 11 71249373 71249373 A G KRTAP5-8 Missense_Mutation p.Y91C 0.20 tolerated(0.19) unknown(0) TCGA-78-7220-01 11 71850886 71850886 G T FOLR3 3'UTR 0.38 TCGA-78-7220-01 11 72945769 72945769 C G P2RY2 Missense_Mutation p.P189A 0.39 deleterious(0.01) benign(0.102) TCGA-78-7220-01 11 73748651 73748651 G A C2CD3 Missense_Mutation p.A1918V 0.66 tolerated(0.1) benign(0.008) TCGA-78-7220-01 11 74054018 74054018 T C PGM2L1 Missense_Mutation p.S452G 0.65 deleterious(0.04) benign(0.223) TCGA-78-7220-01 11 8008770 8008770 G T EIF3F 5'UTR 0.35 TCGA-78-7220-01 11 88386483 88386483 C A GRM5 Missense_Mutation p.V334F 0.22 deleterious(0) probably_damaging(1) TCGA-78-7220-01 11 92087170 92087170 G T FAT3 Missense_Mutation p.G631V 0.60 probably_damaging(1) TCGA-78-7220-01 11 92533690 92533711 AGGTGAGAGAGAACGTGGCTGC - FAT3 Frame_Shift_Del p.V2505Efs*4 0.48 TCGA-78-7220-01 11 93845019 93845019 C G HEPHL1 Missense_Mutation p.Q1147E 0.50 tolerated_low_confidence(0.07) benign(0.014) TCGA-78-7220-01 11 94906381 94906381 G T SESN3 3'UTR 0.80 TCGA-78-7220-01 11 96098141 96098141 T C CCDC82 Intron 0.57 TCGA-78-7220-01 12 109889350 109889350 C A KCTD10 3'UTR 0.56 TCGA-78-7220-01 12 111078323 111078323 G T TCTN1 Splice_Site p.X326_splice 0.51 TCGA-78-7220-01 12 111785741 111785741 G T CUX2 Missense_Mutation p.C1358F 0.17 deleterious_low_confidence(0.04) possibly_damaging(0.459) TCGA-78-7220-01 12 111954043 111954043 C A ATXN2 Silent p.S590S 0.42 TCGA-78-7220-01 12 113531399 113531399 C T DTX1 Silent p.A353A 0.30 TCGA-78-7220-01 12 116446534 116446534 G C MED13L Missense_Mutation p.Q562E 0.06 tolerated(0.6) unknown(0) TCGA-78-7220-01 12 117681140 117681140 C A NOS1 Missense_Mutation p.R1009L 0.49 deleterious(0) benign(0.414) TCGA-78-7220-01 12 117768983 117768983 G T NOS1 5'Flank 0.29 TCGA-78-7220-01 12 1192546 1192546 G C ERC1 Missense_Mutation p.E296Q 0.36 deleterious(0.02) possibly_damaging(0.707) TCGA-78-7220-01 12 120934291 120934291 G T DYNLL1 Nonsense_Mutation p.E23* 0.34 TCGA-78-7220-01 12 122716931 122716932 CC A VPS33A Frame_Shift_Del p.G551Vfs*3 0.22 TCGA-78-7220-01 12 122958140 122958140 C T ZCCHC8 Silent p.E676E 0.18 TCGA-78-7220-01 12 123900388 123900388 G C RILPL2 3'UTR 0.33 TCGA-78-7220-01 12 123900427 123900428 TG A RILPL2 3'UTR 0.16 TCGA-78-7220-01 12 124081400 124081400 G C TMED2 3'UTR 0.24 TCGA-78-7220-01 12 124811959 124811959 C A NCOR2 Silent p.S2393S 0.26 TCGA-78-7220-01 12 125438724 125438724 C T DHX37 Silent p.L829L 0.18 TCGA-78-7220-01 12 132209984 132209984 G T SFSWAP Missense_Mutation p.R214L 0.33 deleterious(0) probably_damaging(0.966) TCGA-78-7220-01 12 132322700 132322700 G A MMP17 Intron 0.32 TCGA-78-7220-01 12 13717474 13717474 G C GRIN2B Missense_Mutation p.R900G 0.34 deleterious(0) probably_damaging(0.999) TCGA-78-7220-01 12 176593 176593 G T IQSEC3 Missense_Mutation p.R182M 0.11 deleterious(0) probably_damaging(0.984) TCGA-78-7220-01 12 22215219 22215219 G T CMAS Missense_Mutation p.R322M 0.41 tolerated(0.15) possibly_damaging(0.783) TCGA-78-7220-01 12 2690809 2690809 C T CACNA1C Missense_Mutation p.S650F 0.33 deleterious(0) possibly_damaging(0.727) TCGA-78-7220-01 12 29474843 29474843 C A FAR2 Missense_Mutation p.P415T 0.35 tolerated(0.16) possibly_damaging(0.886) TCGA-78-7220-01 12 29664978 29664978 T A TMTC1 Nonsense_Mutation p.K836* 0.37 TCGA-78-7220-01 12 29911645 29911645 C A TMTC1 Silent p.S182S 0.33 TCGA-78-7220-01 12 30783815 30783815 C A IPO8 Silent p.G1031G 0.42 TCGA-78-7220-01 12 40076444 40076444 C A C12orf40 Missense_Mutation p.P240T 0.29 deleterious(0.04) possibly_damaging(0.804) TCGA-78-7220-01 12 40076816 40076816 A G C12orf40 Missense_Mutation p.K364E 0.59 tolerated(0.23) benign(0.034) TCGA-78-7220-01 12 40749948 40749948 G T LRRK2 Missense_Mutation p.A2268S 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-78-7220-01 12 44148448 44148448 G A PUS7L Missense_Mutation p.L201F 0.47 tolerated(0.39) benign(0.005) TCGA-78-7220-01 12 44338119 44338119 G C TMEM117 Silent p.T128T 0.33 TCGA-78-7220-01 12 4554576 4554576 C A FGF6 Missense_Mutation p.W54L 0.35 deleterious(0.02) probably_damaging(0.986) TCGA-78-7220-01 12 51281042 51281042 C A TMPRSS12 Intron 0.33 TCGA-78-7220-01 12 52794403 52794403 C A KRT82 Missense_Mutation p.V229L 0.37 deleterious(0) possibly_damaging(0.715) TCGA-78-7220-01 12 52840916 52840916 G A KRT6B 3'UTR 0.31 TCGA-78-7220-01 12 52867507 52867507 G A KRT6C Silent p.S5S 0.39 TCGA-78-7220-01 12 53069373 53069373 A G KRT1 Silent p.S513S 0.32 TCGA-78-7220-01 12 54968993 54968993 C G PDE1B Missense_Mutation p.F392L 0.43 deleterious(0) possibly_damaging(0.587) TCGA-78-7220-01 12 55420927 55420927 C A NEUROD4 Nonsense_Mutation p.S235* 0.17 TCGA-78-7220-01 12 56094137 56094137 G T ITGA7 Missense_Mutation p.D237E 0.33 tolerated(0.34) benign(0.303) TCGA-78-7220-01 12 56234593 56234593 C A MMP19 Silent p.R126R 0.38 TCGA-78-7220-01 12 58008769 58008769 A G ARHGEF25 Missense_Mutation p.N349S 0.31 tolerated(1) benign(0) TCGA-78-7220-01 12 60169063 60169063 C T SLC16A7 Silent p.L329L 0.37 TCGA-78-7220-01 12 64587848 64587848 C G C12orf66 Missense_Mutation p.R371P 0.19 deleterious(0.01) possibly_damaging(0.726) TCGA-78-7220-01 12 68051121 68051121 G T DYRK2 Missense_Mutation p.G145V 0.49 tolerated(0.07) benign(0.165) TCGA-78-7220-01 12 69265575 69265575 G T CPM Nonsense_Mutation p.Y140* 0.06 TCGA-78-7220-01 12 7024855 7024855 C T ENO2 5'UTR 0.38 TCGA-78-7220-01 12 70760503 70760503 G T KCNMB4 5'UTR 0.38 TCGA-78-7220-01 12 71286482 71286482 G T PTPRR Missense_Mutation p.P112T 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.521) TCGA-78-7220-01 12 71978115 71978115 C A LGR5 Missense_Mutation p.N775K 0.30 deleterious(0) possibly_damaging(0.61) TCGA-78-7220-01 12 72388269 72388269 A C TPH2 Missense_Mutation p.K331T 0.06 tolerated(0.24) benign(0.287) TCGA-78-7220-01 12 7639535 7639535 G T CD163 Missense_Mutation p.P700T 0.29 deleterious(0.04) benign(0.033) TCGA-78-7220-01 12 7651466 7651466 G T CD163 Nonsense_Mutation p.S259* 0.34 TCGA-78-7220-01 12 7651467 7651467 A T CD163 Missense_Mutation p.S259T 0.35 tolerated(0.76) benign(0.3) TCGA-78-7220-01 12 77417888 77417888 T C E2F7 Silent p.G881G 0.46 TCGA-78-7220-01 12 78225426 78225426 G T NAV3 Missense_Mutation p.C62F 0.41 tolerated_low_confidence(0.66) possibly_damaging(0.878) TCGA-78-7220-01 12 78400886 78400886 C T NAV3 Missense_Mutation p.S523F 0.25 deleterious(0) benign(0.413) TCGA-78-7220-01 12 7843193 7843193 G T GDF3 Missense_Mutation p.Q126K 0.28 deleterious(0.03) benign(0.389) TCGA-78-7220-01 12 78443869 78443869 A T NAV3 Missense_Mutation p.Q707L 0.42 deleterious(0) probably_damaging(0.996) TCGA-78-7220-01 12 78513016 78513016 G T NAV3 Splice_Site p.X1014_splice 0.28 TCGA-78-7220-01 12 7973858 7973858 T A SLC2A14 Missense_Mutation p.I333F 0.41 deleterious(0) probably_damaging(0.994) TCGA-78-7220-01 12 7981412 7981412 T C SLC2A14 Silent p.L211L 0.36 TCGA-78-7220-01 12 80658853 80658853 G T OTOGL Missense_Mutation p.G687V 0.39 tolerated(0.46) possibly_damaging(0.775) TCGA-78-7220-01 12 81101564 81101564 G T MYF6 Silent p.L22L 0.31 TCGA-78-7220-01 12 81101869 81101869 C A MYF6 Missense_Mutation p.P124H 0.33 deleterious(0) probably_damaging(1) TCGA-78-7220-01 12 83526045 83526045 G T TMTC2 Missense_Mutation p.Q796H 0.42 tolerated(0.18) benign(0.022) TCGA-78-7220-01 12 85449928 85449928 A G LRRIQ1 Missense_Mutation p.R453G 0.42 tolerated(0.05) benign(0.006) TCGA-78-7220-01 12 91449755 91449755 G A KERA Silent p.L102L 0.17 TCGA-78-7220-01 12 9348939 9348939 G T PZP Missense_Mutation p.P360H 0.21 deleterious(0) probably_damaging(0.997) TCGA-78-7220-01 12 94543449 94543449 C T PLXNC1 Silent p.F234F 0.11 TCGA-78-7220-01 12 98928116 98928116 A T TMPO Missense_Mutation p.H694L 0.11 deleterious_low_confidence(0) benign(0.046) TCGA-78-7220-01 13 101707701 101707701 G T NALCN Silent p.T1721T 0.20 TCGA-78-7220-01 13 103436859 103436859 T A KDELC1 Nonsense_Mutation p.K499* 0.19 TCGA-78-7220-01 13 109779720 109779720 C G MYO16 Silent p.G1269G 0.27 TCGA-78-7220-01 13 111293892 111293892 C T CARS2 Missense_Mutation p.A563T 0.23 tolerated_low_confidence(0.59) benign(0.015) TCGA-78-7220-01 13 111353784 111353784 C A CARS2 Splice_Site p.X131_splice 0.13 TCGA-78-7220-01 13 26927936 26927936 G T CDK8 Silent p.R125R 0.52 TCGA-78-7220-01 13 28498415 28498415 G T PDX1 Silent p.P143P 0.33 TCGA-78-7220-01 13 33680966 33680966 G T STARD13 Missense_Mutation p.D1051E 0.09 tolerated(1) benign(0.006) TCGA-78-7220-01 13 44455100 44455100 G T LACC1 5'UTR 0.21 TCGA-78-7220-01 13 46716494 46716494 C A LCP1 Missense_Mutation p.G479C 0.49 deleterious(0) probably_damaging(0.959) TCGA-78-7220-01 13 51855120 51855120 C T FAM124A Missense_Mutation p.H493Y 0.22 tolerated(0.96) benign(0.004) TCGA-78-7220-01 13 53216792 53216792 G A HNRNPA1L2 Silent p.R55R 0.20 TCGA-78-7220-01 13 53313268 53313268 C T LECT1 Silent p.A37A 0.33 TCGA-78-7220-01 13 53421533 53421533 C A PCDH8 Missense_Mutation p.V347F 0.43 deleterious(0) benign(0.19) TCGA-78-7220-01 13 58207527 58207527 A T PCDH17 Missense_Mutation p.S283C 0.23 deleterious(0.01) probably_damaging(0.932) TCGA-78-7220-01 13 58208637 58208637 G T PCDH17 Nonsense_Mutation p.E653* 0.20 TCGA-78-7220-01 13 64321238 64321238 C A AL445989.1 Missense_Mutation p.T102N 0.10 unknown(0) TCGA-78-7220-01 13 73317703 73317703 T A BORA Silent p.V139V 0.14 TCGA-78-7220-01 13 75936394 75936394 C G TBC1D4 Missense_Mutation p.G283A 0.60 tolerated(0.61) benign(0) TCGA-78-7220-01 13 77695587 77695587 G T MYCBP2 Missense_Mutation p.S2649R 0.38 probably_damaging(0.988) TCGA-78-7220-01 13 79177360 79177360 C A POU4F1 Silent p.R34R 0.33 TCGA-78-7220-01 13 84453666 84453666 G T SLITRK1 Silent p.S659S 0.24 TCGA-78-7220-01 13 84453667 84453667 G T SLITRK1 Missense_Mutation p.S659Y 0.25 tolerated(0.25) probably_damaging(0.921) TCGA-78-7220-01 13 95050774 95050774 G T GPC6 Missense_Mutation p.E448D 0.22 tolerated(0.13) benign(0.253) TCGA-78-7220-01 14 105353312 105353312 G A CEP170B Silent p.L912L 0.09 TCGA-78-7220-01 14 105360686 105360686 G A CEP170B Missense_Mutation p.E1446K 0.20 deleterious(0) probably_damaging(0.988) TCGA-78-7220-01 14 106725300 106725300 C T IGHV3-23 Silent p.K84K 0.16 TCGA-78-7220-01 14 107013178 107013178 G C IGHV3-49 Silent p.L39L 0.26 TCGA-78-7220-01 14 19553593 19553593 C A POTEG Missense_Mutation p.S59R 0.16 deleterious_low_confidence(0.02) benign(0.012) TCGA-78-7220-01 14 20019993 20019993 G C POTEM Silent p.G76G 0.10 TCGA-78-7220-01 14 20020044 20020044 G T POTEM Missense_Mutation p.S59R 0.15 deleterious_low_confidence(0.02) benign(0.205) TCGA-78-7220-01 14 20248502 20248502 C A OR4M1 Silent p.T7T 0.28 TCGA-78-7220-01 14 20586030 20586030 G T OR4K17 Silent p.V155V 0.24 TCGA-78-7220-01 14 20666414 20666414 G T OR11G2 Missense_Mutation p.G307V 0.31 deleterious(0.02) benign(0.183) TCGA-78-7220-01 14 22102650 22102650 A T OR10G2 Missense_Mutation p.C117S 0.24 deleterious(0.04) probably_damaging(0.998) TCGA-78-7220-01 14 23846561 23846561 A T CMTM5 Missense_Mutation p.K34M 0.33 deleterious(0) probably_damaging(0.979) TCGA-78-7220-01 14 23865568 23865568 C A MYH6 Missense_Mutation p.R785L 0.32 tolerated(0.16) benign(0.006) TCGA-78-7220-01 14 23866169 23866169 C T MYH6 Intron 0.24 TCGA-78-7220-01 14 24586899 24586899 G T DCAF11 Missense_Mutation p.R145L 0.28 tolerated(0.32) benign(0.091) TCGA-78-7220-01 14 24685148 24685148 G T MDP1 Missense_Mutation p.P5Q 0.32 deleterious(0) probably_damaging(1) TCGA-78-7220-01 14 33291213 33291214 GG C AKAP6 Frame_Shift_Del p.D1399Tfs*11 0.23 TCGA-78-7220-01 14 42373417 42373417 C A LRFN5 3'UTR 0.50 TCGA-78-7220-01 14 44974624 44974624 C A FSCB Missense_Mutation p.A523S 0.28 tolerated(0.26) benign(0.014) TCGA-78-7220-01 14 45603672 45603672 C G FKBP3 5'UTR 0.16 TCGA-78-7220-01 14 45644562 45644562 G T FANCM Nonsense_Mutation p.E869* 0.11 TCGA-78-7220-01 14 45645485 45645485 C T FANCM Silent p.F1176F 0.40 TCGA-78-7220-01 14 47566196 47566196 A T MDGA2 Silent p.T352T 0.31 TCGA-78-7220-01 14 50760895 50760895 C G L2HGDH Missense_Mutation p.G160R 0.30 deleterious(0.01) possibly_damaging(0.673) TCGA-78-7220-01 14 52156583 52156583 G A FRMD6 Missense_Mutation p.R10K 0.22 tolerated(0.6) benign(0.004) TCGA-78-7220-01 14 52735243 52735243 C A PTGDR Silent p.R237R 0.35 TCGA-78-7220-01 14 57099808 57099808 T G TMEM260 Missense_Mutation p.V548G 0.27 deleterious(0) probably_damaging(0.963) TCGA-78-7220-01 14 60193698 60193698 C A RTN1 Missense_Mutation p.K568N 0.28 deleterious(0.02) benign(0.101) TCGA-78-7220-01 14 64548216 64548216 T A SYNE2 Missense_Mutation p.I3801K 0.27 possibly_damaging(0.675) TCGA-78-7220-01 14 68249655 68249655 T C ZFYVE26 Missense_Mutation p.H1405R 0.33 deleterious(0.01) possibly_damaging(0.615) TCGA-78-7220-01 14 69520495 69520495 C G DCAF5 3'UTR 0.64 TCGA-78-7220-01 14 70515701 70515701 G T SLC8A3 Nonsense_Mutation p.Y730* 0.23 TCGA-78-7220-01 14 71576260 71576260 G T PCNX Missense_Mutation p.G2279V 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-78-7220-01 14 72139292 72139292 G T SIPA1L1 Silent p.T1019T 0.31 TCGA-78-7220-01 14 72200383 72200383 G A SIPA1L1 Missense_Mutation p.G1642E 0.35 deleterious(0.02) possibly_damaging(0.783) TCGA-78-7220-01 14 72205864 72205864 A G SIPA1L1 Missense_Mutation p.I1801V 0.33 tolerated(0.14) possibly_damaging(0.651) TCGA-78-7220-01 14 77605711 77605711 C A ZDHHC22 Missense_Mutation p.R124L 0.27 deleterious(0) probably_damaging(0.997) TCGA-78-7220-01 14 81209421 81209421 C A CEP128 Missense_Mutation p.R935I 0.40 deleterious(0) possibly_damaging(0.798) TCGA-78-7220-01 14 81606129 81606129 T A TSHR Missense_Mutation p.L267M 0.22 deleterious(0.03) possibly_damaging(0.844) TCGA-78-7220-01 14 91007809 91007809 C A TTC7B Missense_Mutation p.G812V 0.63 deleterious(0) probably_damaging(0.996) TCGA-78-7220-01 14 94160753 94160753 G C UNC79 Missense_Mutation p.V2377L 0.15 tolerated(0.11) benign(0.014) TCGA-78-7220-01 14 96788934 96788934 T C ATG2B Silent p.L893L 0.12 TCGA-78-7220-01 14 96794780 96794780 C A ATG2B Silent p.V689V 0.45 TCGA-78-7220-01 15 100594224 100594224 C G ADAMTS17 Missense_Mutation p.D725H 0.31 deleterious(0.02) probably_damaging(1) TCGA-78-7220-01 15 20644305 20644305 C A HERC2P3 RNA 0.26 TCGA-78-7220-01 15 22368924 22368924 G T OR4M2 Missense_Mutation p.V117L 0.40 deleterious(0.02) benign(0.017) TCGA-78-7220-01 15 25423738 25423738 C T SNORD115-6 5'Flank 0.41 TCGA-78-7220-01 15 25448411 25448411 G T SNORD115-18 RNA 0.28 TCGA-78-7220-01 15 25465666 25465666 A G SNORD115-27 RNA 0.39 TCGA-78-7220-01 15 27159961 27159961 C G GABRA5 Missense_Mutation p.S170C 0.37 deleterious(0.01) probably_damaging(0.94) TCGA-78-7220-01 15 28501138 28501138 T A HERC2 Silent p.S917S 0.35 TCGA-78-7220-01 15 31358306 31358306 G A TRPM1 Missense_Mutation p.H272Y 0.41 tolerated(0.45) possibly_damaging(0.473) TCGA-78-7220-01 15 32929737 32929737 G T ARHGAP11A Missense_Mutation p.M921I 0.35 tolerated(0.11) benign(0.001) TCGA-78-7220-01 15 41657667 41657667 C A NUSAP1 Missense_Mutation p.S243Y 0.54 tolerated(0.14) benign(0.022) TCGA-78-7220-01 15 41961119 41961119 G T MGA Missense_Mutation p.L9F 0.40 deleterious(0) probably_damaging(0.997) TCGA-78-7220-01 15 42040946 42040946 G T MGA Missense_Mutation p.R1775I 0.31 deleterious(0) probably_damaging(0.998) TCGA-78-7220-01 15 42154041 42154041 G A SPTBN5 Silent p.F2543F 0.16 TCGA-78-7220-01 15 48056248 48056248 A T SEMA6D Missense_Mutation p.T317S 0.34 tolerated(0.6) probably_damaging(0.999) TCGA-78-7220-01 15 49447788 49447788 G A COPS2 5'UTR 0.17 TCGA-78-7220-01 15 51988091 51988091 A T SCG3 Missense_Mutation p.K296N 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-78-7220-01 15 53997389 53997389 C T WDR72 Missense_Mutation p.D382N 0.10 tolerated(0.07) benign(0.126) TCGA-78-7220-01 15 54860111 54860111 G C UNC13C Missense_Mutation p.L2024F 0.42 deleterious_low_confidence(0) probably_damaging(1) TCGA-78-7220-01 15 63029075 63029075 A C TLN2 Splice_Site p.X1120_splice 0.32 TCGA-78-7220-01 15 63547784 63547784 G A RAB8B Splice_Site p.X108_splice 0.39 TCGA-78-7220-01 15 66996112 66996112 C G SMAD6 Silent p.L172L 0.20 TCGA-78-7220-01 15 69238614 69238614 C - SPESP1 Frame_Shift_Del p.P248Qfs*14 0.22 TCGA-78-7220-01 15 69709797 69709797 C A KIF23 Missense_Mutation p.Q53K 0.32 tolerated(0.06) probably_damaging(0.925) TCGA-78-7220-01 15 72810415 72810415 C T ARIH1 Missense_Mutation p.A128V 0.22 tolerated(0.23) benign(0.058) TCGA-78-7220-01 15 72953665 72953665 G C GOLGA6B Missense_Mutation p.A209P 0.10 deleterious(0) possibly_damaging(0.82) TCGA-78-7220-01 15 74324920 74324920 A T PML Missense_Mutation p.E421V 0.32 deleterious(0.03) benign(0.175) TCGA-78-7220-01 15 74368267 74368267 C A GOLGA6A Silent p.R208R 0.26 TCGA-78-7220-01 15 74630430 74630430 G T CYP11A1 Missense_Mutation p.F483L 0.35 deleterious(0) probably_damaging(0.974) TCGA-78-7220-01 15 76994195 76994195 C A SCAPER Missense_Mutation p.E804D 0.39 deleterious(0.01) benign(0.366) TCGA-78-7220-01 15 77348188 77348188 G A TSPAN3 Silent p.L91L 0.30 TCGA-78-7220-01 15 78465984 78465984 C T ACSBG1 Silent p.Q680Q 0.16 TCGA-78-7220-01 15 79058484 79058484 C A ADAMTS7 Missense_Mutation p.V1257L 0.36 tolerated(0.52) benign(0.007) TCGA-78-7220-01 15 80423536 80423536 A G ZFAND6 Missense_Mutation p.T127A 0.31 tolerated(0.39) benign(0.002) TCGA-78-7220-01 15 81660628 81660628 G T TMC3 Missense_Mutation p.T93N 0.36 tolerated(0.12) benign(0.052) TCGA-78-7220-01 15 83658778 83658778 C A FAM103A1 Missense_Mutation p.H106N 0.24 tolerated(0.13) benign(0.001) TCGA-78-7220-01 15 83776517 83776517 C A TM6SF1 Missense_Mutation p.Q29K 0.38 tolerated(0.35) benign(0) TCGA-78-7220-01 15 83935591 83935591 C T BNC1 Silent p.L144L 0.33 TCGA-78-7220-01 15 89390529 89390529 G T ACAN Missense_Mutation p.E495D 0.38 deleterious(0) unknown(0) TCGA-78-7220-01 15 90903471 90903471 G A ZNF774 Silent p.E136E 0.39 TCGA-78-7220-01 15 93515119 93515119 G T CHD2 Nonsense_Mutation p.E772* 0.31 TCGA-78-7220-01 15 97328391 97328391 C GA SPATA8 3'UTR 0.24 TCGA-78-7220-01 16 15225120 15225120 T A RP11-1186N24.5 RNA 0.21 TCGA-78-7220-01 16 15695879 15695879 C A KIAA0430 Missense_Mutation p.S1532I 0.28 deleterious(0) possibly_damaging(0.462) TCGA-78-7220-01 16 19083370 19083370 G T COQ7 Missense_Mutation p.R65L 0.20 deleterious(0.02) possibly_damaging(0.565) TCGA-78-7220-01 16 21109957 21109957 G C DNAH3 Missense_Mutation p.R834G 0.27 tolerated(0.21) benign(0) TCGA-78-7220-01 16 21663924 21663924 G T IGSF6 5'UTR 0.28 TCGA-78-7220-01 16 25143744 25143744 G T LCMT1 Missense_Mutation p.G76V 0.28 deleterious(0.02) probably_damaging(0.971) TCGA-78-7220-01 16 25251106 25251106 T A ZKSCAN2 3'UTR 0.30 TCGA-78-7220-01 16 27509024 27509024 C A GTF3C1 Nonsense_Mutation p.G762* 0.19 TCGA-78-7220-01 16 27549551 27549551 C A GTF3C1 Silent p.R186R 0.27 TCGA-78-7220-01 16 27732964 27732964 G A KIAA0556 Missense_Mutation p.G564E 0.24 tolerated(0.55) benign(0.026) TCGA-78-7220-01 16 28518121 28518121 C A IL27 Silent p.T4T 0.30 TCGA-78-7220-01 16 28857230 28857230 C T TUFM Intron 0.28 TCGA-78-7220-01 16 28857418 28857418 G T TUFM Missense_Mutation p.A21D 0.30 tolerated(0.13) benign(0.426) TCGA-78-7220-01 16 28883302 28883302 C G SH2B1 Missense_Mutation p.T504R 0.37 tolerated(0.08) benign(0.115) TCGA-78-7220-01 16 28913328 28913328 G T ATP2A1 Nonsense_Mutation p.E749* 0.26 TCGA-78-7220-01 16 29827971 29827971 C T PAGR1 Missense_Mutation p.S42L 0.19 tolerated(0.28) benign(0.004) TCGA-78-7220-01 16 30621283 30621283 C A ZNF689 Missense_Mutation p.R27M 0.29 tolerated(0.07) probably_damaging(0.962) TCGA-78-7220-01 16 30621285 30621285 C A ZNF689 Silent p.P26P 0.27 TCGA-78-7220-01 16 3080764 3080764 C T CCDC64B Missense_Mutation p.G183E 0.46 tolerated(0.8) benign(0.057) TCGA-78-7220-01 16 30990548 30990548 C T SETD1A Silent p.P1147P 0.44 TCGA-78-7220-01 16 31382492 31382492 G T ITGAX Missense_Mutation p.V600L 0.27 tolerated(0.12) benign(0.002) TCGA-78-7220-01 16 32266273 32266273 C T TP53TG3D 3'UTR 0.29 TCGA-78-7220-01 16 32893903 32893903 A T RP11-989E6.3 5'Flank 0.20 TCGA-78-7220-01 16 3293590 3293590 G T MEFV Missense_Mutation p.P633T 0.28 tolerated(0.06) possibly_damaging(0.604) TCGA-78-7220-01 16 3778918 3778918 C A CREBBP Missense_Mutation p.A2044S 0.50 unknown(0) TCGA-78-7220-01 16 3778942 3778942 G C CREBBP Missense_Mutation p.P2036A 0.37 unknown(0) TCGA-78-7220-01 16 418630 418630 C - MRPL28 Frame_Shift_Del p.K150Rfs*12 0.23 TCGA-78-7220-01 16 422663 422663 C G TMEM8A Missense_Mutation p.W656S 0.26 deleterious(0) probably_damaging(1) TCGA-78-7220-01 16 47581457 47581457 G T PHKB Silent p.S236S 0.29 TCGA-78-7220-01 16 49669913 49669913 T A ZNF423 Silent p.S1050S 0.53 TCGA-78-7220-01 16 57060669 57060669 G T NLRC5 Missense_Mutation p.R605L 0.65 deleterious(0.01) possibly_damaging(0.483) TCGA-78-7220-01 16 57503205 57503205 G A POLR2C Silent p.P129P 0.19 TCGA-78-7220-01 16 67337219 67337219 A C KCTD19 Missense_Mutation p.L158R 0.38 deleterious(0) probably_damaging(0.999) TCGA-78-7220-01 16 67576305 67576305 C T FAM65A Missense_Mutation p.S559L 0.19 deleterious(0.02) benign(0.009) TCGA-78-7220-01 16 67576770 67576770 C G FAM65A Nonsense_Mutation p.S714* 0.15 TCGA-78-7220-01 16 71209580 71209580 T G HYDIN Missense_Mutation p.D149A 0.71 probably_damaging(0.954) TCGA-78-7220-01 16 71423873 71423873 C A CALB2 3'UTR 0.72 TCGA-78-7220-01 16 72166849 72166849 C A PMFBP1 Missense_Mutation p.K415N 0.67 tolerated(0.11) possibly_damaging(0.853) TCGA-78-7220-01 16 76481964 76481964 A T CNTNAP4 Missense_Mutation p.Q173H 0.10 deleterious(0.05) benign(0.005) TCGA-78-7220-01 16 7760775 7760775 G T RBFOX1 3'UTR 0.26 TCGA-78-7220-01 16 7760777 7760777 G T RBFOX1 3'UTR 0.29 TCGA-78-7220-01 16 84691178 84691178 G T KLHL36 Silent p.S255S 0.54 TCGA-78-7220-01 16 89940102 89940102 G T TCF25 Silent p.L9L 0.40 TCGA-78-7220-01 16 9857977 9857977 G T GRIN2A Missense_Mutation p.P1142T 0.28 tolerated(0.41) benign(0.05) TCGA-78-7220-01 17 1028541 1028541 G T ABR Missense_Mutation p.P75T 0.49 tolerated_low_confidence(0.24) benign(0.003) TCGA-78-7220-01 17 10317709 10317709 G C MYH8 Missense_Mutation p.L300V 0.79 deleterious(0.02) possibly_damaging(0.66) TCGA-78-7220-01 17 16638040 16638040 C T CCDC144A Missense_Mutation p.H819Y 0.69 tolerated(0.12) possibly_damaging(0.534) TCGA-78-7220-01 17 17053523 17053523 G A MPRIP Silent p.Q447Q 0.78 TCGA-78-7220-01 17 17053524 17053524 A T MPRIP Nonsense_Mutation p.R448* 0.78 TCGA-78-7220-01 17 18387216 18387216 G T LGALS9C Missense_Mutation p.G23W 0.32 deleterious(0) probably_damaging(1) TCGA-78-7220-01 17 19641530 19641530 C A ALDH3A1 3'UTR 0.59 TCGA-78-7220-01 17 21319673 21319673 T A KCNJ12 Missense_Mutation p.I340N 0.11 deleterious(0) possibly_damaging(0.853) TCGA-78-7220-01 17 27905753 27905753 T A GIT1 Missense_Mutation p.Q278L 0.43 deleterious(0) benign(0.419) TCGA-78-7220-01 17 27994166 27994166 C T SSH2 Silent p.E268E 0.16 TCGA-78-7220-01 17 27994190 27994190 C T SSH2 Silent p.E260E 0.14 TCGA-78-7220-01 17 29095934 29095934 G T SUZ12P RNA 0.43 TCGA-78-7220-01 17 31318969 31318969 C T SPACA3 Silent p.L5L 0.41 TCGA-78-7220-01 17 32647389 32647389 C G CCL8 Missense_Mutation p.P60A 0.40 tolerated(0.06) possibly_damaging(0.589) TCGA-78-7220-01 17 32964838 32964838 C T TMEM132E Silent p.L848L 0.24 TCGA-78-7220-01 17 33849573 33849573 G T SLFN12L 5'UTR 0.42 TCGA-78-7220-01 17 33951559 33951559 G A AP2B1 Silent p.L223L 0.54 TCGA-78-7220-01 17 34431942 34431942 C T CCL4 Missense_Mutation p.A33V 0.22 tolerated(0.2) possibly_damaging(0.482) TCGA-78-7220-01 17 3539418 3539418 G A SHPK Silent p.F32F 0.89 TCGA-78-7220-01 17 37107921 37107921 C T FBXO47 Missense_Mutation p.E177K 0.32 deleterious(0.01) benign(0.174) TCGA-78-7220-01 17 38062138 38062138 C G GSDMB Missense_Mutation p.R330P 0.40 tolerated(0.14) benign(0.072) TCGA-78-7220-01 17 38711510 38711510 C T CCR7 Silent p.A207A 0.24 TCGA-78-7220-01 17 39041261 39041261 G T KRT20 Silent p.L59L 0.50 TCGA-78-7220-01 17 39333842 39333842 T C KRTAP4-2 3'UTR 0.22 TCGA-78-7220-01 17 39521219 39521219 G T KRT33B Missense_Mutation p.S303R 0.18 deleterious(0) possibly_damaging(0.507) TCGA-78-7220-01 17 3992155 3992155 C A ZZEF1 Missense_Mutation p.Q686H 0.66 tolerated(0.06) possibly_damaging(0.896) TCGA-78-7220-01 17 41832894 41832894 G A SOST Missense_Mutation p.A153V 0.33 deleterious(0.02) benign(0.18) TCGA-78-7220-01 17 41832895 41832895 C T SOST Missense_Mutation p.A153T 0.35 tolerated(1) benign(0.013) TCGA-78-7220-01 17 41847041 41847041 C A DUSP3 Missense_Mutation p.G165V 0.29 deleterious(0) probably_damaging(1) TCGA-78-7220-01 17 42249613 42249613 C A ASB16 Silent p.A167A 0.48 TCGA-78-7220-01 17 43037484 43037484 G A C1QL1 3'UTR 0.22 TCGA-78-7220-01 17 43045021 43045021 G A C1QL1 Silent p.F132F 0.28 TCGA-78-7220-01 17 45734381 45734381 G A KPNB1 Missense_Mutation p.M146I 0.14 tolerated(0.1) benign(0.006) TCGA-78-7220-01 17 5072103 5072103 G T USP6 Missense_Mutation p.W1090C 0.80 deleterious_low_confidence(0) probably_damaging(1) TCGA-78-7220-01 17 56232889 56232889 C T OR4D1 Silent p.A125A 0.15 TCGA-78-7220-01 17 56385939 56385939 C A BZRAP1 Missense_Mutation p.R1565L 0.18 tolerated(0.13) benign(0.166) TCGA-78-7220-01 17 58227362 58227362 C G CA4 5'UTR 0.38 TCGA-78-7220-01 17 5998516 5998516 G T WSCD1 Silent p.G274G 0.75 TCGA-78-7220-01 17 61466858 61466858 G T TANC2 Missense_Mutation p.A928S 0.59 tolerated(0.09) benign(0.084) TCGA-78-7220-01 17 61877962 61877962 C T DDX42 Silent p.P202P 0.45 TCGA-78-7220-01 17 6515398 6515398 C A KIAA0753 Silent p.A462A 0.73 TCGA-78-7220-01 17 65529066 65529066 G T PITPNC1 Missense_Mutation p.S66I 0.18 deleterious(0) probably_damaging(0.952) TCGA-78-7220-01 17 66397555 66397555 G C ARSG Missense_Mutation p.V423L 0.13 tolerated(0.42) benign(0.032) TCGA-78-7220-01 17 66928587 66928587 G T ABCA8 Silent p.S213S 0.40 TCGA-78-7220-01 17 6703471 6703471 C A TEKT1 Missense_Mutation p.V378F 0.74 deleterious(0) benign(0.303) TCGA-78-7220-01 17 67305460 67305460 C A ABCA5 Nonsense_Mutation p.E138* 0.51 TCGA-78-7220-01 17 68128383 68128383 G T KCNJ16 Missense_Mutation p.G52V 0.56 deleterious(0.02) probably_damaging(0.996) TCGA-78-7220-01 17 72351386 72351387 - G KIF19 Frame_Shift_Ins p.G979Wfs*20 0.18 TCGA-78-7220-01 17 72926573 72926573 T A OTOP2 Silent p.P281P 0.51 TCGA-78-7220-01 17 7319154 7319154 C G NLGN2 Silent p.L454L 0.62 TCGA-78-7220-01 17 73539531 73539531 G T LLGL2 Silent p.G8G 0.20 TCGA-78-7220-01 17 74387492 74387492 C A UBE2O Silent p.R1137R 0.20 TCGA-78-7220-01 17 7577551 7577551 C A TP53 Missense_Mutation p.G244C 0.73 deleterious(0) probably_damaging(1) TCGA-78-7220-01 17 7751209 7751209 G A KDM6B Missense_Mutation p.V535M 0.82 unknown(0) TCGA-78-7220-01 17 7984601 7984601 G - AC129492.6 3'UTR 0.69 TCGA-78-7220-01 17 79881067 79881067 G A MAFG 5'UTR 0.23 TCGA-78-7220-01 17 79881068 79881068 G A MAFG 5'UTR 0.24 TCGA-78-7220-01 17 8018969 8018969 C A ALOXE3 Silent p.L262L 0.70 TCGA-78-7220-01 17 80726366 80726366 G T TBCD Missense_Mutation p.R169L 0.42 deleterious(0.01) probably_damaging(1) TCGA-78-7220-01 17 9631591 9631591 G T USP43 Missense_Mutation p.G886C 0.24 tolerated(0.09) possibly_damaging(0.619) TCGA-78-7220-01 18 22806052 22806052 C T ZNF521 Silent p.V610V 0.64 TCGA-78-7220-01 18 23731871 23731871 C G PSMA8 Missense_Mutation p.C99W 0.59 deleterious(0) probably_damaging(1) TCGA-78-7220-01 18 29110998 29110998 G T DSG2 Missense_Mutation p.A355S 0.56 tolerated(0.21) benign(0.017) TCGA-78-7220-01 18 50994282 50994282 C A DCC Missense_Mutation p.A1213E 0.69 deleterious(0.04) benign(0.375) TCGA-78-7220-01 18 51013247 51013247 C A DCC Missense_Mutation p.P1273T 0.56 tolerated(0.62) benign(0.05) TCGA-78-7220-01 18 55240516 55240516 G A FECH Silent p.L98L 0.23 TCGA-78-7220-01 18 61309119 61309119 C T SERPINB4 Missense_Mutation p.D76N 0.67 deleterious(0.04) benign(0.005) TCGA-78-7220-01 18 61326722 61326722 G T SERPINB3 Missense_Mutation p.L88I 0.51 tolerated(0.12) possibly_damaging(0.737) TCGA-78-7220-01 18 70209133 70209133 G A CBLN2 Missense_Mutation p.S88F 0.61 deleterious(0.04) possibly_damaging(0.905) TCGA-78-7220-01 18 8819054 8819054 C T SOGA2 Missense_Mutation p.R985C 0.65 tolerated(0.15) benign(0.049) TCGA-78-7220-01 19 10578383 10578383 C T PDE4A 3'UTR 0.58 TCGA-78-7220-01 19 10599899 10599899 G A KEAP1 Silent p.I559I 0.70 TCGA-78-7220-01 19 1113632 1113632 C T SBNO2 Missense_Mutation p.D717N 0.27 tolerated(0.13) benign(0.009) TCGA-78-7220-01 19 1221314 1221314 C - STK11 Frame_Shift_Del p.P281Rfs*6 0.50 TCGA-78-7220-01 19 12760786 12760786 C A MAN2B1 Silent p.P736P 0.63 TCGA-78-7220-01 19 14236936 14236936 G A ASF1B Nonsense_Mutation p.Q75* 0.23 TCGA-78-7220-01 19 1468918 1468918 C T APC2 Missense_Mutation p.S1873F 0.29 probably_damaging(0.978) TCGA-78-7220-01 19 1470032 1470032 C T APC2 Silent p.F2244F 0.38 TCGA-78-7220-01 19 14710840 14710840 C T CLEC17A Intron 0.61 TCGA-78-7220-01 19 1555342 1555342 T C MEX3D 3'UTR 0.13 TCGA-78-7220-01 19 15586644 15586644 C T PGLYRP2 Silent p.G279G 0.53 TCGA-78-7220-01 19 15586645 15586645 C T PGLYRP2 Missense_Mutation p.G279E 0.53 deleterious(0) probably_damaging(1) TCGA-78-7220-01 19 17375084 17375084 G - USHBP1 Frame_Shift_Del p.R9Efs*39 0.37 TCGA-78-7220-01 19 19932491 19932491 G T ZNF506 5'UTR 0.59 TCGA-78-7220-01 19 21477067 21477067 T A ZNF708 Missense_Mutation p.N234I 0.48 tolerated(0.1) possibly_damaging(0.904) TCGA-78-7220-01 19 2185894 2185894 G T DOT1L Nonsense_Mutation p.E56* 0.63 TCGA-78-7220-01 19 23328939 23328939 G A ZNF730 Missense_Mutation p.G365R 0.38 deleterious(0.01) benign(0) TCGA-78-7220-01 19 2832341 2832341 G T ZNF554 Missense_Mutation p.E98D 0.61 tolerated(1) benign(0) TCGA-78-7220-01 19 31025765 31025765 G T ZNF536 Nonsense_Mutation p.E728* 0.56 TCGA-78-7220-01 19 35823621 35823621 C G CD22 Missense_Mutation p.S69W 0.11 deleterious(0) possibly_damaging(0.785) TCGA-78-7220-01 19 36351918 36351918 A G KIRREL2 Missense_Mutation p.T346A 0.83 tolerated(0.08) benign(0.059) TCGA-78-7220-01 19 39105076 39105076 G A MAP4K1 Missense_Mutation p.S108F 0.22 deleterious(0) possibly_damaging(0.678) TCGA-78-7220-01 19 40886804 40886804 G T HIPK4 Nonsense_Mutation p.S365* 0.78 TCGA-78-7220-01 19 40886805 40886805 A T HIPK4 Missense_Mutation p.S365T 0.78 deleterious(0.05) benign(0.195) TCGA-78-7220-01 19 43372271 43372271 T C PSG1 Missense_Mutation p.M409V 0.35 tolerated(1) benign(0.001) TCGA-78-7220-01 19 43411795 43411795 G T PSG6 Silent p.P306P 0.76 TCGA-78-7220-01 19 46299289 46299289 G - RSPH6A Frame_Shift_Del p.I665Ffs*14 0.47 TCGA-78-7220-01 19 4704055 4704055 C A DPP9 Missense_Mutation p.M204I 0.59 tolerated(0.09) benign(0.089) TCGA-78-7220-01 19 47193862 47193862 G C PRKD2 Missense_Mutation p.L602V 0.07 deleterious(0) possibly_damaging(0.5) TCGA-78-7220-01 19 51363173 51363173 C A KLK3 Intron 0.66 TCGA-78-7220-01 19 51628239 51628239 T A SIGLEC9 Missense_Mutation p.L3Q 0.62 deleterious_low_confidence(0.02) unknown(0) TCGA-78-7220-01 19 51850280 51850280 C T ETFB Silent p.G248G 0.66 TCGA-78-7220-01 19 52618238 52618238 C A ZNF616 Missense_Mutation p.G727W 0.48 deleterious(0.02) probably_damaging(0.968) TCGA-78-7220-01 19 54745467 54745467 C T LILRA6 Missense_Mutation p.E215K 0.44 deleterious(0.05) benign(0.22) TCGA-78-7220-01 19 54822948 54822948 G C LILRA5 Missense_Mutation p.P150A 0.69 deleterious(0.01) possibly_damaging(0.484) TCGA-78-7220-01 19 55354341 55354342 GG C KIR2DS4 Frame_Shift_Del p.G221Pfs*5 0.27 TCGA-78-7220-01 19 55666156 55666156 C A TNNI3 Nonsense_Mutation p.E109* 0.17 TCGA-78-7220-01 19 56423258 56423258 A G NLRP13 Missense_Mutation p.L642P 0.62 deleterious(0) probably_damaging(0.998) TCGA-78-7220-01 19 57088752 57088752 A G ZNF470 Missense_Mutation p.K319E 0.56 deleterious(0) probably_damaging(0.996) TCGA-78-7220-01 19 57335848 57335848 C A PEG3 Missense_Mutation p.G59V 0.58 deleterious(0) probably_damaging(0.991) TCGA-78-7220-01 19 57641309 57641309 C A USP29 Nonsense_Mutation p.C422* 0.55 TCGA-78-7220-01 19 57641310 57641310 C A USP29 Missense_Mutation p.P423T 0.54 deleterious(0.01) probably_damaging(0.983) TCGA-78-7220-01 19 58018445 58018445 G A ZNF773 Missense_Mutation p.E328K 0.31 tolerated(0.06) probably_damaging(0.94) TCGA-78-7220-01 19 58050072 58050072 G T ZNF549 Missense_Mutation p.R567I 0.51 tolerated(0.14) benign(0.205) TCGA-78-7220-01 19 58199705 58199705 G T ZNF551 3'UTR 0.65 TCGA-78-7220-01 19 5843929 5843929 C G FUT3 Missense_Mutation p.E308Q 0.26 tolerated(0.37) benign(0.209) TCGA-78-7220-01 19 58489748 58489748 C T ZNF606 Missense_Mutation p.S767N 0.59 tolerated(1) benign(0.001) TCGA-78-7220-01 19 58596189 58596189 C A ZSCAN18 Nonsense_Mutation p.E522* 0.78 TCGA-78-7220-01 19 59073507 59073507 C T MZF1 Missense_Mutation p.D713N 0.65 deleterious(0.04) possibly_damaging(0.653) TCGA-78-7220-01 19 59073873 59073873 G A MZF1 Missense_Mutation p.H591Y 0.71 deleterious(0) probably_damaging(0.99) TCGA-78-7220-01 19 7619583 7619583 G T PNPLA6 Missense_Mutation p.G880W 0.66 deleterious(0) probably_damaging(0.996) TCGA-78-7220-01 19 8841555 8841555 C A OR2Z1 Silent p.L55L 0.61 TCGA-78-7220-01 19 9000495 9000495 G T MUC16 Missense_Mutation p.H13497N 0.47 possibly_damaging(0.743) TCGA-78-7220-01 19 9059553 9059553 T C MUC16 Missense_Mutation p.E9298G 0.62 unknown(0) TCGA-78-7220-01 1 101196970 101196970 T C VCAM1 Missense_Mutation p.I474T 0.53 tolerated(1) benign(0.003) TCGA-78-7220-01 1 103544278 103544278 G C COL11A1 Missense_Mutation p.H142D 0.56 probably_damaging(0.983) TCGA-78-7220-01 1 114453880 114453880 G T DCLRE1B Silent p.V222V 0.59 TCGA-78-7220-01 1 12202462 12202462 G T TNFRSF8 Silent p.A554A 0.75 TCGA-78-7220-01 1 12378229 12378229 C T VPS13D Missense_Mutation p.P2417S 0.26 benign(0.393) TCGA-78-7220-01 1 12381926 12381926 C T VPS13D Nonsense_Mutation p.Q2537* 0.33 TCGA-78-7220-01 1 12382622 12382622 C T VPS13D Silent p.L2578L 0.22 TCGA-78-7220-01 1 1284484 1284484 G A DVL1 5'UTR 0.82 TCGA-78-7220-01 1 1289418 1289418 A T MXRA8 Missense_Mutation p.I405N 0.59 deleterious(0) benign(0.216) TCGA-78-7220-01 1 144857633 144857633 G T PDE4DIP Missense_Mutation p.P2141T 0.25 tolerated(0.59) benign(0.001) TCGA-78-7220-01 1 149905396 149905396 C G MTMR11 Silent p.G296G 0.29 TCGA-78-7220-01 1 150804313 150804313 G A ARNT Silent p.I312I 0.24 TCGA-78-7220-01 1 151819828 151819828 C T THEM5 3'UTR 0.18 TCGA-78-7220-01 1 152058979 152058979 C G TCHHL1 Missense_Mutation p.E393D 0.25 tolerated(0.23) benign(0.034) TCGA-78-7220-01 1 152193687 152193687 A C HRNR Missense_Mutation p.Y140D 0.25 benign(0.35) TCGA-78-7220-01 1 152275666 152275666 G C FLG Missense_Mutation p.S3899C 0.22 unknown(0) TCGA-78-7220-01 1 152944616 152944616 G T SPRR4 3'UTR 0.23 TCGA-78-7220-01 1 152944617 152944617 G A SPRR4 3'UTR 0.23 TCGA-78-7220-01 1 153665964 153665964 C A NPR1 3'UTR 0.12 TCGA-78-7220-01 1 155210446 155210446 T A GBA Silent p.L30L 0.23 TCGA-78-7220-01 1 155747449 155747449 T G GON4L Silent p.P685P 0.44 TCGA-78-7220-01 1 156498840 156498840 C A IQGAP3 Missense_Mutation p.R1480L 0.44 deleterious(0.01) probably_damaging(0.92) TCGA-78-7220-01 1 156640182 156640182 C T NES Silent p.L1266L 0.21 TCGA-78-7220-01 1 156640382 156640382 G A NES Missense_Mutation p.P1200S 0.49 tolerated(0.16) benign(0.141) TCGA-78-7220-01 1 156641772 156641772 T G NES Silent p.L736L 0.18 TCGA-78-7220-01 1 157522155 157522155 A G FCRL5 5'UTR 0.30 TCGA-78-7220-01 1 158326360 158326360 A T CD1E Missense_Mutation p.D326V 0.24 tolerated(0.36) benign(0.022) TCGA-78-7220-01 1 158669658 158669658 C A OR6K2 Missense_Mutation p.R262L 0.45 deleterious(0) probably_damaging(0.961) TCGA-78-7220-01 1 159277713 159277713 A G FCER1A Silent p.K255K 0.18 TCGA-78-7220-01 1 160803841 160803841 C T CD244 Silent p.K325K 0.51 TCGA-78-7220-01 1 160851778 160851778 G C ITLN1 Missense_Mutation p.S125C 0.20 deleterious(0.01) benign(0.222) TCGA-78-7220-01 1 161018299 161018299 G T ARHGAP30 Silent p.R838R 0.47 TCGA-78-7220-01 1 161205671 161205671 C T NR1I3 Silent p.L68L 0.26 TCGA-78-7220-01 1 162381777 162381777 C T SH2D1B Silent p.L10L 0.23 TCGA-78-7220-01 1 168550404 168550404 C A XCL1 Silent p.T97T 0.32 TCGA-78-7220-01 1 17265571 17265571 C A CROCC Silent p.A514A 0.71 TCGA-78-7220-01 1 176845766 176845766 G T ASTN1 Missense_Mutation p.L1124M 0.33 deleterious(0) probably_damaging(0.995) TCGA-78-7220-01 1 176903441 176903441 T A ASTN1 Missense_Mutation p.T840S 0.18 tolerated(1) benign(0.343) TCGA-78-7220-01 1 177001859 177001859 C A ASTN1 Nonsense_Mutation p.E200* 0.51 TCGA-78-7220-01 1 177199053 177199053 C A BRINP2 Missense_Mutation p.P14Q 0.40 tolerated_low_confidence(0.17) benign(0.114) TCGA-78-7220-01 1 178846673 178846673 C T RALGPS2 Silent p.Y216Y 0.33 TCGA-78-7220-01 1 181452923 181452923 G T CACNA1E Missense_Mutation p.G15C 0.42 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-78-7220-01 1 181764180 181764180 G T CACNA1E Missense_Mutation p.G2070C 0.50 deleterious(0) probably_damaging(0.993) TCGA-78-7220-01 1 182026853 182026853 G A ZNF648 Missense_Mutation p.S98F 0.46 deleterious(0.02) benign(0.177) TCGA-78-7220-01 1 186143744 186143744 C A HMCN1 Silent p.R5305R 0.14 TCGA-78-7220-01 1 19412691 19412691 G A UBR4 Missense_Mutation p.P4921S 0.65 probably_damaging(0.992) TCGA-78-7220-01 1 196397266 196397266 A - KCNT2 Frame_Shift_Del p.L318* 0.17 TCGA-78-7220-01 1 197097645 197097645 C A ASPM Missense_Mutation p.D971Y 0.43 deleterious(0) probably_damaging(1) TCGA-78-7220-01 1 20302216 20302216 C T PLA2G2A Missense_Mutation p.R138K 0.55 tolerated(0.97) benign(0.001) TCGA-78-7220-01 1 205042313 205042313 G A CNTN2 Missense_Mutation p.G988R 0.36 deleterious(0.04) probably_damaging(0.993) TCGA-78-7220-01 1 207871171 207871171 A T CR1L Silent p.P365P 0.25 TCGA-78-7220-01 1 210948702 210948702 G A KCNH1 Silent p.N700N 0.22 TCGA-78-7220-01 1 215799051 215799051 G T USH2A 3'UTR 0.25 TCGA-78-7220-01 1 215972267 215972267 C T USH2A Missense_Mutation p.V3314M 0.33 benign(0.024) TCGA-78-7220-01 1 216380685 216380685 G C USH2A Silent p.A1082A 0.30 TCGA-78-7220-01 1 216420317 216420317 C T USH2A Missense_Mutation p.V807I 0.19 benign(0.02) TCGA-78-7220-01 1 222721267 222721267 C T HHIPL2 Silent p.Q40Q 0.17 TCGA-78-7220-01 1 223990487 223990487 C G TP53BP2 Silent p.L314L 0.36 TCGA-78-7220-01 1 226053597 226053597 C G TMEM63A Missense_Mutation p.R249P 0.17 tolerated(0.14) benign(0.271) TCGA-78-7220-01 1 226413217 226413217 C A MIXL1 Missense_Mutation p.Q135K 0.31 deleterious(0) probably_damaging(0.998) TCGA-78-7220-01 1 228582607 228582607 C - TRIM11 Frame_Shift_Del p.R402Sfs*51 0.19 TCGA-78-7220-01 1 229730381 229730381 G A TAF5L Missense_Mutation p.P478L 0.12 deleterious(0) probably_damaging(0.943) TCGA-78-7220-01 1 230979618 230979618 C T C1orf198 Missense_Mutation p.A137T 0.29 deleterious(0.01) benign(0.124) TCGA-78-7220-01 1 233114055 233114055 G C NTPCR 3'UTR 0.60 TCGA-78-7220-01 1 236143153 236143153 C G NID1 Missense_Mutation p.G1160R 0.31 deleterious(0.05) possibly_damaging(0.883) TCGA-78-7220-01 1 236201530 236201530 G T NID1 Missense_Mutation p.R387S 0.30 tolerated(0.09) benign(0.012) TCGA-78-7220-01 1 238049134 238049134 C T ZP4 Missense_Mutation p.V298I 0.25 tolerated(0.19) benign(0.158) TCGA-78-7220-01 1 240255689 240255689 C A FMN2 Missense_Mutation p.R94S 0.50 unknown(0) TCGA-78-7220-01 1 240256638 240256638 C T FMN2 Missense_Mutation p.P410L 0.21 unknown(0) TCGA-78-7220-01 1 240371697 240371697 A T FMN2 Silent p.I1195I 0.19 TCGA-78-7220-01 1 240975331 240975331 G T RGS7 Missense_Mutation p.S323R 0.32 deleterious(0.04) benign(0.12) TCGA-78-7220-01 1 247586622 247586622 C A NLRP3 Nonsense_Mutation p.S125* 0.39 TCGA-78-7220-01 1 247654727 247654727 C T OR2W5 RNA 0.33 TCGA-78-7220-01 1 248058859 248058859 G A OR2W3 Intron 0.34 TCGA-78-7220-01 1 248084532 248084532 G T OR2T8 Silent p.L71L 0.15 TCGA-78-7220-01 1 248402303 248402303 A T OR2M4 Missense_Mutation p.T25S 0.39 tolerated(0.42) benign(0.046) TCGA-78-7220-01 1 248436296 248436296 G A OR2T33 Missense_Mutation p.A274V 0.34 tolerated(0.44) benign(0.047) TCGA-78-7220-01 1 248458341 248458341 G T OR2T12 Silent p.P180P 0.34 TCGA-78-7220-01 1 248685161 248685161 T A OR2G6 Missense_Mutation p.C72S 0.35 tolerated(0.08) benign(0.027) TCGA-78-7220-01 1 248756342 248756342 G A OR2T10 Missense_Mutation p.S243F 0.33 deleterious(0.02) probably_damaging(1) TCGA-78-7220-01 1 248789723 248789723 G T OR2T11 Missense_Mutation p.T236N 0.35 deleterious(0) possibly_damaging(0.511) TCGA-78-7220-01 1 32130777 32130777 T C COL16A1 Missense_Mutation p.E1184G 0.65 unknown(0) TCGA-78-7220-01 1 33959961 33959961 G C ZSCAN20 Missense_Mutation p.D673H 0.63 deleterious(0.03) benign(0.235) TCGA-78-7220-01 1 36026222 36026222 A T NCDN Missense_Mutation p.Q157L 0.55 tolerated(0.05) probably_damaging(0.945) TCGA-78-7220-01 1 3679916 3679916 C T CCDC27 Missense_Mutation p.A400V 0.63 tolerated(0.21) benign(0.031) TCGA-78-7220-01 1 36807506 36807506 G A STK40 Silent p.A386A 0.74 TCGA-78-7220-01 1 41092228 41092228 C A RIMS3 Missense_Mutation p.Q296H 0.62 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-78-7220-01 1 47027147 47027147 C A MKNK1 Intron 0.65 TCGA-78-7220-01 1 57537954 57537954 A T DAB1 Splice_Site p.X146_splice 0.54 TCGA-78-7220-01 1 60324670 60324670 A C HOOK1 Silent p.T448T 0.30 TCGA-78-7220-01 1 61849027 61849027 A G NFIA Silent p.T400T 0.66 TCGA-78-7220-01 1 71477998 71477998 T G PTGER3 Missense_Mutation p.K356T 0.30 deleterious(0) probably_damaging(0.999) TCGA-78-7220-01 1 75038923 75038923 T G C1orf173 Missense_Mutation p.E824A 0.68 deleterious(0.01) benign(0.05) TCGA-78-7220-01 1 75039126 75039126 G T C1orf173 Missense_Mutation p.N756K 0.66 deleterious(0.01) possibly_damaging(0.65) TCGA-78-7220-01 1 75622763 75622763 T C LHX8 Splice_Site p.X332_splice 0.60 TCGA-78-7220-01 1 91177984 91177984 G T BARHL2 Missense_Mutation p.P350H 0.75 deleterious(0) unknown(0) TCGA-78-7220-01 1 92327037 92327037 C A TGFBR3 Missense_Mutation p.A18S 0.70 tolerated(0.2) benign(0.004) TCGA-78-7220-01 1 95614331 95614331 A G TMEM56 Missense_Mutation p.K77E 0.59 tolerated(1) benign(0.044) TCGA-78-7220-01 20 13463883 13463883 T A TASP1 Nonsense_Mutation p.K326* 0.08 TCGA-78-7220-01 20 20168617 20168617 G T C20orf26 Missense_Mutation p.V477L 0.25 deleterious(0.03) benign(0.43) TCGA-78-7220-01 20 23361951 23361951 C A NAPB Missense_Mutation p.G189W 0.28 deleterious(0) possibly_damaging(0.614) TCGA-78-7220-01 20 25187891 25187891 C G ENTPD6 Silent p.A78A 0.35 TCGA-78-7220-01 20 2774935 2774935 C G CPXM1 Missense_Mutation p.K702N 0.49 deleterious(0) probably_damaging(0.909) TCGA-78-7220-01 20 30072057 30072057 C A REM1 Missense_Mutation p.R241S 0.52 deleterious(0) possibly_damaging(0.751) TCGA-78-7220-01 20 30433385 30433385 G T FOXS1 5'UTR 0.36 TCGA-78-7220-01 20 30556385 30556385 G T XKR7 Missense_Mutation p.G136V 0.52 deleterious(0.02) benign(0.322) TCGA-78-7220-01 20 34263123 34263123 C A NFS1 Silent p.G264G 0.33 TCGA-78-7220-01 20 36668900 36668900 G - RPRD1B Frame_Shift_Del p.G74Dfs*31 0.15 TCGA-78-7220-01 20 37464706 37464706 C A PPP1R16B Missense_Mutation p.H46Q 0.33 tolerated(0.36) possibly_damaging(0.836) TCGA-78-7220-01 20 37464707 37464707 C A PPP1R16B Missense_Mutation p.R47S 0.33 tolerated(0.1) possibly_damaging(0.476) TCGA-78-7220-01 20 3914811 3914811 G A RNF24 Missense_Mutation p.P137S 0.24 deleterious(0.03) benign(0.086) TCGA-78-7220-01 20 39991413 39991413 C A EMILIN3 Missense_Mutation p.V266L 0.23 tolerated(0.06) benign(0.027) TCGA-78-7220-01 20 4162483 4162483 G T SMOX Missense_Mutation p.D157Y 0.34 deleterious(0.01) possibly_damaging(0.57) TCGA-78-7220-01 20 4202116 4202116 C G ADRA1D 3'UTR 0.21 TCGA-78-7220-01 20 42680094 42680094 C - TOX2 Frame_Shift_Del p.H188Tfs*120 0.35 TCGA-78-7220-01 20 44856239 44856239 G A CDH22 Missense_Mutation p.S193L 0.26 deleterious(0.02) benign(0.344) TCGA-78-7220-01 20 47273705 47273705 T A PREX1 Missense_Mutation p.R666W 0.41 deleterious(0) probably_damaging(0.996) TCGA-78-7220-01 20 49211133 49211133 G C FAM65C Missense_Mutation p.F719L 0.17 tolerated(0.22) benign(0.009) TCGA-78-7220-01 20 50715084 50715084 G C ZFP64 Missense_Mutation p.S72C 0.18 tolerated(0.1) benign(0.005) TCGA-78-7220-01 20 57769279 57769279 G T ZNF831 Nonsense_Mutation p.E1069* 0.23 TCGA-78-7220-01 20 60511869 60511869 C G CDH4 Missense_Mutation p.S873R 0.24 deleterious(0.02) probably_damaging(0.996) TCGA-78-7220-01 20 60921767 60921767 G C LAMA5 Missense_Mutation p.Q388E 0.23 benign(0.089) TCGA-78-7220-01 20 61542639 61542639 G A DIDO1 Missense_Mutation p.T109I 0.11 possibly_damaging(0.827) TCGA-78-7220-01 20 62737739 62737739 G T NPBWR2 Missense_Mutation p.T149N 0.27 tolerated(0.06) probably_damaging(0.972) TCGA-78-7220-01 20 62839222 62839222 G T MYT1 Missense_Mutation p.V225F 0.31 benign(0.359) TCGA-78-7220-01 20 7864200 7864200 C A HAO1 3'UTR 0.26 TCGA-78-7220-01 21 10941907 10941907 C G TPTE Splice_Site p.X265_splice 0.23 TCGA-78-7220-01 21 11039070 11039070 C A BAGE2 RNA 0.09 TCGA-78-7220-01 21 27269947 27269947 C T APP Missense_Mutation p.E668K 0.11 tolerated(0.25) benign(0.222) TCGA-78-7220-01 21 35124113 35124113 A C ITSN1 Splice_Site p.X176_splice 0.38 TCGA-78-7220-01 21 40800330 40800330 C G LCA5L Missense_Mutation p.K30N 0.19 tolerated(0.41) benign(0.009) TCGA-78-7220-01 21 43767651 43767651 C A TFF2 Missense_Mutation p.C107F 0.56 deleterious(0) probably_damaging(1) TCGA-78-7220-01 21 46591536 46591536 C T ADARB1 5'UTR 0.55 TCGA-78-7220-01 22 17071853 17071853 G T CCT8L2 Missense_Mutation p.Q530K 0.28 tolerated(0.64) benign(0.001) TCGA-78-7220-01 22 18028647 18028647 G A CECR2 Missense_Mutation p.G1203R 0.08 deleterious(0) probably_damaging(1) TCGA-78-7220-01 22 19968925 19968925 G C ARVCF Silent p.A235A 0.43 TCGA-78-7220-01 22 21159449 21159449 G A PI4KA Silent p.L391L 0.52 TCGA-78-7220-01 22 25598760 25598760 G T CRYBB3 Splice_Site p.X65_splice 0.35 TCGA-78-7220-01 22 26884164 26884165 GT - SRRD Frame_Shift_Del p.C143Lfs*13 0.25 TCGA-78-7220-01 22 31286744 31286744 C T OSBP2 Silent p.L551L 0.38 TCGA-78-7220-01 22 31328732 31328732 C A MORC2 Silent p.V787V 0.55 TCGA-78-7220-01 22 32829734 32829734 G A BPIFC Missense_Mutation p.S317F 0.16 deleterious(0.03) benign(0.089) TCGA-78-7220-01 22 33673221 33673221 C T LARGE Missense_Mutation p.G633D 0.30 deleterious(0) probably_damaging(1) TCGA-78-7220-01 22 35947895 35947895 T A RASD2 Missense_Mutation p.V206E 0.29 deleterious(0.02) benign(0.323) TCGA-78-7220-01 22 36624070 36624070 G A APOL2 Missense_Mutation p.L132F 0.28 tolerated(0.24) benign(0.359) TCGA-78-7220-01 22 37407052 37407052 C A TST 3'UTR 0.27 TCGA-78-7220-01 22 38327858 38327858 C T MICALL1 Missense_Mutation p.P645L 0.24 deleterious(0) probably_damaging(0.999) TCGA-78-7220-01 22 39883362 39883362 A T MGAT3 Nonsense_Mutation p.R4* 0.31 TCGA-78-7220-01 22 40662323 40662323 G T TNRC6B Missense_Mutation p.G697C 0.36 deleterious(0.03) possibly_damaging(0.841) TCGA-78-7220-01 22 41973201 41973201 T A PMM1 3'UTR 0.25 TCGA-78-7220-01 22 42793949 42793949 C T NFAM1 Missense_Mutation p.G193D 0.47 deleterious(0.04) benign(0.19) TCGA-78-7220-01 22 43627882 43627882 C G SCUBE1 Splice_Site p.X282_splice 0.26 TCGA-78-7220-01 22 46760117 46760117 C A CELSR1 Silent p.P2937P 0.19 TCGA-78-7220-01 22 47071404 47071404 G T GRAMD4 Missense_Mutation p.K506N 0.18 deleterious(0.05) possibly_damaging(0.861) TCGA-78-7220-01 2 110301795 110301795 A C SEPT10 3'UTR 0.61 TCGA-78-7220-01 2 114500281 114500281 A G SLC35F5 Silent p.F246F 0.51 TCGA-78-7220-01 2 120439433 120439433 G T TMEM177 3'UTR 0.62 TCGA-78-7220-01 2 124783113 124783113 C A CNTNAP5 5'UTR 0.76 TCGA-78-7220-01 2 124783184 124783184 G A CNTNAP5 5'UTR 0.08 TCGA-78-7220-01 2 128480604 128480604 T A WDR33 Missense_Mutation p.N436Y 0.48 deleterious(0.01) unknown(0) TCGA-78-7220-01 2 131487482 131487482 G T GPR148 Missense_Mutation p.G253V 0.15 tolerated(0.38) benign(0.003) TCGA-78-7220-01 2 131904286 131904286 G T PLEKHB2 Silent p.L211L 0.43 TCGA-78-7220-01 2 132021759 132021759 G A POTEE Missense_Mutation p.D911N 0.07 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-78-7220-01 2 136519471 136519471 C T UBXN4 Nonsense_Mutation p.R198* 0.19 TCGA-78-7220-01 2 141747101 141747101 C A LRP1B Missense_Mutation p.A924S 0.24 benign(0.092) TCGA-78-7220-01 2 144245002 144245002 T G ARHGAP15 Nonsense_Mutation p.L255* 0.57 TCGA-78-7220-01 2 145161529 145161529 G T ZEB2 Missense_Mutation p.T254N 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-78-7220-01 2 145161590 145161590 G T ZEB2 Missense_Mutation p.H234N 0.49 deleterious(0) probably_damaging(0.992) TCGA-78-7220-01 2 148672860 148672860 A T ACVR2A Missense_Mutation p.Q210L 0.21 deleterious(0.04) probably_damaging(0.995) TCGA-78-7220-01 2 15701392 15701392 C A NBAS Missense_Mutation p.G13C 0.24 deleterious_low_confidence(0.04) possibly_damaging(0.499) TCGA-78-7220-01 2 167262796 167262796 C T SCN7A Nonsense_Mutation p.W1448* 0.55 TCGA-78-7220-01 2 170019084 170019084 T A LRP2 Missense_Mutation p.T3929S 0.51 benign(0.084) TCGA-78-7220-01 2 170077068 170077068 C T LRP2 Silent p.L1848L 0.13 TCGA-78-7220-01 2 175427157 175427157 C A WIPF1 3'UTR 0.71 TCGA-78-7220-01 2 177191571 177191571 A C MTX2 Missense_Mutation p.H76P 0.48 deleterious(0.03) benign(0.317) TCGA-78-7220-01 2 178483510 178483510 T A TTC30A 5'UTR 0.56 TCGA-78-7220-01 2 179425883 179425883 G C TTN Missense_Mutation p.R28326G 0.17 TCGA-78-7220-01 2 179440743 179440743 A G TTN Silent p.P23372P 0.54 TCGA-78-7220-01 2 179582915 179582915 A G TTN Missense_Mutation p.V8273A 0.53 TCGA-78-7220-01 2 183050628 183050628 C A PDE1A Missense_Mutation p.A519S 0.22 tolerated(0.19) benign(0.163) TCGA-78-7220-01 2 188225437 188225437 C A CALCRL Missense_Mutation p.M223I 0.47 tolerated(0.13) benign(0.002) TCGA-78-7220-01 2 191301058 191301058 C G MFSD6 Missense_Mutation p.S101R 0.50 deleterious(0.01) possibly_damaging(0.76) TCGA-78-7220-01 2 1926792 1926792 C A MYT1L Missense_Mutation p.S250I 0.35 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-78-7220-01 2 204281786 204281786 C T ABI2 Missense_Mutation p.R412C 0.54 deleterious(0) probably_damaging(0.959) TCGA-78-7220-01 2 204599661 204599661 C A CD28 3'UTR 0.12 TCGA-78-7220-01 2 207613751 207613751 C G MDH1B Missense_Mutation p.L403F 0.59 tolerated(0.08) benign(0.053) TCGA-78-7220-01 2 20823688 20823688 G A HS1BP3 Silent p.L296L 0.20 TCGA-78-7220-01 2 20871124 20871124 C T GDF7 Missense_Mutation p.A431V 0.37 deleterious(0) possibly_damaging(0.899) TCGA-78-7220-01 2 21231903 21231903 G T APOB Missense_Mutation p.Q2613K 0.22 benign(0.214) TCGA-78-7220-01 2 218712411 218712411 G A TNS1 Silent p.S818S 0.17 TCGA-78-7220-01 2 219561779 219561779 A T STK36 Silent p.L868L 0.54 TCGA-78-7220-01 2 219895922 219895922 A G CCDC108 Silent p.F307F 0.52 TCGA-78-7220-01 2 220379616 220379616 C A ASIC4 Missense_Mutation p.A184D 0.14 deleterious(0) probably_damaging(0.915) TCGA-78-7220-01 2 231041333 231041333 C A SP110 Intron 0.26 TCGA-78-7220-01 2 231934803 231934803 A T PSMD1 Missense_Mutation p.Q192L 0.54 tolerated(0.15) benign(0.002) TCGA-78-7220-01 2 233546494 233546494 G T EFHD1 3'UTR 0.55 TCGA-78-7220-01 2 234102540 234102540 G T INPP5D Missense_Mutation p.L831F 0.17 deleterious(0.02) benign(0.148) TCGA-78-7220-01 2 241622123 241622123 C A AQP12B Silent p.A44A 0.76 TCGA-78-7220-01 2 241700235 241700235 G T KIF1A Missense_Mutation p.T764K 0.54 deleterious(0) benign(0.205) TCGA-78-7220-01 2 241818165 241818165 C A AGXT Missense_Mutation p.T369N 0.53 tolerated(0.14) benign(0.046) TCGA-78-7220-01 2 24522942 24522942 C G ITSN2 Missense_Mutation p.E394Q 0.14 deleterious(0) unknown(0) TCGA-78-7220-01 2 27156125 27156125 G T DPYSL5 Splice_Site p.X239_splice 0.25 TCGA-78-7220-01 2 27375589 27375589 G - TCF23 Frame_Shift_Del p.G167Afs*104 0.33 TCGA-78-7220-01 2 27455010 27455010 G T CAD Nonsense_Mutation p.G855* 0.31 TCGA-78-7220-01 2 27556629 27556629 T A GTF3C2 Missense_Mutation p.Q542L 0.27 deleterious(0) possibly_damaging(0.626) TCGA-78-7220-01 2 28814591 28814591 A T PLB1 Missense_Mutation p.R718W 0.34 deleterious(0.01) possibly_damaging(0.812) TCGA-78-7220-01 2 29432736 29432736 G T ALK Missense_Mutation p.A1251D 0.30 deleterious(0) probably_damaging(1) TCGA-78-7220-01 2 31133917 31133917 G C GALNT14 Silent p.T508T 0.37 TCGA-78-7220-01 2 39075409 39075409 A T DHX57 Splice_Site p.X722_splice 0.23 TCGA-78-7220-01 2 40387940 40387940 C A SLC8A1 Missense_Mutation p.R745I 0.29 deleterious(0) probably_damaging(0.969) TCGA-78-7220-01 2 46608739 46608739 G - EPAS1 Frame_Shift_Del p.A684Qfs*12 0.11 TCGA-78-7220-01 2 50280690 50280690 T C NRXN1 Missense_Mutation p.I1323V 0.21 tolerated(0.15) benign(0.002) TCGA-78-7220-01 2 50699460 50699460 C T NRXN1 Missense_Mutation p.G1114R 0.30 deleterious(0) probably_damaging(0.998) TCGA-78-7220-01 2 54482213 54482213 A T TSPYL6 Missense_Mutation p.L359H 0.24 deleterious(0) benign(0.221) TCGA-78-7220-01 2 63101631 63101631 A T EHBP1 Silent p.T418T 0.31 TCGA-78-7220-01 2 69204875 69204876 - CTC GKN1 In_Frame_Ins p.S73dup 0.36 TCGA-78-7220-01 2 74900936 74900936 G T SEMA4F Missense_Mutation p.R268L 0.27 deleterious(0) probably_damaging(0.996) TCGA-78-7220-01 2 79255001 79255001 G - REG3G Frame_Shift_Del p.N136Ifs*6 0.19 TCGA-78-7220-01 2 79255031 79255031 C A REG3G Silent p.G144G 0.25 TCGA-78-7220-01 2 79313597 79313597 C A REG1B Missense_Mutation p.V73L 0.30 deleterious(0) benign(0.133) TCGA-78-7220-01 2 79363105 79363105 A G REG1P RNA 0.30 TCGA-78-7220-01 2 79384313 79384314 GT A REG3A 3'UTR 0.29 TCGA-78-7220-01 2 80530107 80530107 G T LRRTM1 Missense_Mutation p.P280T 0.30 deleterious(0) probably_damaging(0.999) TCGA-78-7220-01 2 80835320 80835320 A T CTNNA2 Silent p.S769S 0.28 TCGA-78-7220-01 2 85570768 85570768 G A RETSAT Silent p.L563L 0.21 TCGA-78-7220-01 2 85578966 85578966 C A RETSAT Silent p.V64V 0.31 TCGA-78-7220-01 2 86067447 86067447 C G ST3GAL5 Silent p.A359A 0.25 TCGA-78-7220-01 2 86437816 86437816 G T MRPL35 3'UTR 0.20 TCGA-78-7220-01 2 88327754 88327754 C A KRCC1 Missense_Mutation p.C110F 0.38 tolerated(0.65) benign(0.29) TCGA-78-7220-01 2 90121855 90121855 C A IGKV1D-17 Missense_Mutation p.Q25K 0.24 tolerated(0.16) benign(0.119) TCGA-78-7220-01 2 96795628 96795628 G T ASTL Nonsense_Mutation p.S270* 0.31 TCGA-78-7220-01 2 96956500 96956500 T C SNRNP200 Silent p.T825T 0.19 TCGA-78-7220-01 3 113285295 113285295 G T SIDT1 Missense_Mutation p.S84I 0.57 tolerated(0.41) benign(0.022) TCGA-78-7220-01 3 11389429 11389429 G T ATG7 Nonsense_Mutation p.E402* 0.20 TCGA-78-7220-01 3 114070030 114070030 C A ZBTB20 Nonsense_Mutation p.E299* 0.63 TCGA-78-7220-01 3 115805215 115805215 G T LSAMP Missense_Mutation p.T115K 0.71 deleterious(0) probably_damaging(0.911) TCGA-78-7220-01 3 121345800 121345800 C G FBXO40 3'UTR 0.50 TCGA-78-7220-01 3 12458265 12458265 C T PPARG Silent p.H294H 0.50 TCGA-78-7220-01 3 12650800 12650800 C A RAF1 Missense_Mutation p.A119S 0.35 tolerated(1) benign(0.012) TCGA-78-7220-01 3 128181701 128181701 G T DNAJB8 Missense_Mutation p.L130M 0.61 tolerated(0.3) benign(0.012) TCGA-78-7220-01 3 132075635 132075635 G T ACPP Missense_Mutation p.E358D 0.60 tolerated(0.09) benign(0.009) TCGA-78-7220-01 3 13395161 13395161 C A NUP210 Splice_Site p.X841_splice 0.56 TCGA-78-7220-01 3 140277677 140277677 C A CLSTN2 Silent p.A673A 0.22 TCGA-78-7220-01 3 151164048 151164048 C G IGSF10 Missense_Mutation p.A1241P 0.15 deleterious(0.05) possibly_damaging(0.642) TCGA-78-7220-01 3 157213276 157213276 G C VEPH1 5'UTR 0.24 TCGA-78-7220-01 3 157817678 157817678 C A SHOX2 Missense_Mutation p.V249L 0.83 tolerated(0.22) possibly_damaging(0.895) TCGA-78-7220-01 3 160130201 160130201 G A SMC4 Missense_Mutation p.E314K 0.71 tolerated(0.59) benign(0.049) TCGA-78-7220-01 3 167183320 167183320 T - SERPINI2 Frame_Shift_Del p.N207Mfs*9 0.22 TCGA-78-7220-01 3 167218013 167218013 G T WDR49 Missense_Mutation p.P635T 0.31 deleterious(0) possibly_damaging(0.886) TCGA-78-7220-01 3 170078333 170078333 A T SKIL Missense_Mutation p.T72S 0.72 tolerated(0.89) benign(0.001) TCGA-78-7220-01 3 170110112 170110112 C G SKIL Silent p.L654L 0.35 TCGA-78-7220-01 3 171321085 171321085 C T PLD1 Missense_Mutation p.R1003Q 0.66 tolerated(0.07) probably_damaging(0.963) TCGA-78-7220-01 3 172835332 172835332 T C SPATA16 Missense_Mutation p.K64E 0.09 deleterious(0) possibly_damaging(0.486) TCGA-78-7220-01 3 187419849 187419849 G T RTP2 Missense_Mutation p.P23Q 0.43 deleterious(0) probably_damaging(0.986) TCGA-78-7220-01 3 192516836 192516836 T G MB21D2 Missense_Mutation p.Y272S 0.49 deleterious(0.01) probably_damaging(0.984) TCGA-78-7220-01 3 19322702 19322702 G T KCNH8 Missense_Mutation p.W108L 0.61 tolerated(0.05) probably_damaging(0.995) TCGA-78-7220-01 3 193360811 193360811 G A OPA1 Silent p.V408V 0.12 TCGA-78-7220-01 3 194061746 194061746 T C CPN2 3'UTR 0.89 TCGA-78-7220-01 3 194061747 194061747 G T CPN2 3'UTR 0.89 TCGA-78-7220-01 3 24164618 24164618 T C THRB Splice_Site p.X382_splice 0.60 TCGA-78-7220-01 3 29476318 29476318 A T RBMS3 Missense_Mutation p.S54C 0.58 tolerated(0.11) benign(0.099) TCGA-78-7220-01 3 36763036 36763036 C A DCLK3 Nonsense_Mutation p.E523* 0.55 TCGA-78-7220-01 3 36763037 36763037 G A DCLK3 Silent p.P522P 0.54 TCGA-78-7220-01 3 38592470 38592470 C T SCN5A Nonsense_Mutation p.W1798* 0.21 TCGA-78-7220-01 3 38622493 38622493 C T SCN5A Missense_Mutation p.E1053K 0.57 deleterious(0.04) probably_damaging(0.997) TCGA-78-7220-01 3 42560740 42560740 C G VIPR1 Silent p.L70L 0.17 TCGA-78-7220-01 3 42754689 42754689 G A CCDC13 Missense_Mutation p.S613L 0.29 tolerated(0.23) benign(0.009) TCGA-78-7220-01 3 46062455 46062455 C T XCR1 Missense_Mutation p.G329S 0.78 tolerated(0.1) possibly_damaging(0.73) TCGA-78-7220-01 3 49049783 49049783 C T WDR6 Silent p.I302I 0.33 TCGA-78-7220-01 3 49052793 49052793 C T WDR6 3'UTR 0.32 TCGA-78-7220-01 3 49055271 49055271 C G DALRD3 Missense_Mutation p.D165H 0.17 deleterious(0) probably_damaging(0.984) TCGA-78-7220-01 3 49866574 49866574 G C TRAIP Missense_Mutation p.L458V 0.43 tolerated(1) benign(0.005) TCGA-78-7220-01 3 49866641 49866641 G A TRAIP Silent p.I435I 0.41 TCGA-78-7220-01 3 49898176 49898176 G C CAMKV Missense_Mutation p.P250A 0.22 deleterious(0) probably_damaging(0.999) TCGA-78-7220-01 3 51274978 51274978 G T DOCK3 Missense_Mutation p.D687Y 0.55 deleterious(0) probably_damaging(0.987) TCGA-78-7220-01 3 57232929 57232929 G A HESX1 Missense_Mutation p.S70L 0.28 tolerated(0.44) benign(0.002) TCGA-78-7220-01 3 57302620 57302620 G T ASB14 3'UTR 0.36 TCGA-78-7220-01 3 58494711 58494711 T C ACOX2 Missense_Mutation p.D631G 0.15 deleterious(0) probably_damaging(1) TCGA-78-7220-01 3 89259610 89259610 G A EPHA3 Missense_Mutation p.V252I 0.59 deleterious(0) probably_damaging(0.919) TCGA-78-7220-01 3 89499367 89499367 C T EPHA3 Missense_Mutation p.P846L 0.50 deleterious(0.01) probably_damaging(1) TCGA-78-7220-01 3 98188956 98188956 G T OR5K1 Missense_Mutation p.C179F 0.61 deleterious(0) probably_damaging(0.999) TCGA-78-7220-01 4 100518330 100518330 C T MTTP Missense_Mutation p.A339V 0.19 deleterious(0) probably_damaging(0.939) TCGA-78-7220-01 4 1018205 1018205 G T FGFRL1 Missense_Mutation p.K275N 0.27 deleterious(0.01) probably_damaging(0.968) TCGA-78-7220-01 4 109810880 109810880 C A COL25A1 Nonsense_Mutation p.G306* 0.54 TCGA-78-7220-01 4 115997368 115997368 C G NDST4 Missense_Mutation p.L275F 0.27 tolerated(0.17) probably_damaging(0.995) TCGA-78-7220-01 4 125591647 125591647 C A ANKRD50 Missense_Mutation p.V929F 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-78-7220-01 4 126373060 126373060 G T FAT4 Missense_Mutation p.G3630V 0.70 probably_damaging(1) TCGA-78-7220-01 4 126398441 126398441 G C FAT4 Missense_Mutation p.R4142T 0.62 probably_damaging(0.996) TCGA-78-7220-01 4 128722948 128722948 G T HSPA4L Missense_Mutation p.A180S 0.44 tolerated(0.35) possibly_damaging(0.773) TCGA-78-7220-01 4 134071836 134071836 G A PCDH10 Missense_Mutation p.A181T 0.18 deleterious(0.02) probably_damaging(0.996) TCGA-78-7220-01 4 134072031 134072031 A G PCDH10 Missense_Mutation p.N246D 0.62 deleterious(0) probably_damaging(0.993) TCGA-78-7220-01 4 144390297 144390297 G A GAB1 Silent p.G710G 0.48 TCGA-78-7220-01 4 146463769 146463769 G C SMAD1 Missense_Mutation p.D232H 0.20 deleterious(0.02) benign(0.003) TCGA-78-7220-01 4 162697208 162697208 G A FSTL5 Missense_Mutation p.T143I 0.64 tolerated(0.1) benign(0.001) TCGA-78-7220-01 4 183603067 183603067 G T TENM3 Missense_Mutation p.K645N 0.67 tolerated(0.34) possibly_damaging(0.475) TCGA-78-7220-01 4 183714956 183714956 G A TENM3 Silent p.K2377K 0.55 TCGA-78-7220-01 4 184606267 184606267 G T TRAPPC11 Missense_Mutation p.R533L 0.34 deleterious(0.04) benign(0.25) TCGA-78-7220-01 4 190878567 190878567 G T FRG1 Missense_Mutation p.L149F 0.32 deleterious(0.01) possibly_damaging(0.618) TCGA-78-7220-01 4 23830212 23830212 T C PPARGC1A Missense_Mutation p.S190G 0.32 tolerated(0.28) benign(0.021) TCGA-78-7220-01 4 41016094 41016094 C A APBB2 Missense_Mutation p.G114V 0.25 tolerated(0.07) probably_damaging(1) TCGA-78-7220-01 4 47034501 47034501 G A GABRB1 Missense_Mutation p.M80I 0.38 deleterious(0) probably_damaging(0.964) TCGA-78-7220-01 4 48169819 48169819 C T TEC Nonsense_Mutation p.W216* 0.24 TCGA-78-7220-01 4 48584702 48584702 G C FRYL Missense_Mutation p.L600V 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-78-7220-01 4 62845295 62845295 C A LPHN3 Silent p.V872V 0.60 TCGA-78-7220-01 4 65175609 65175609 G T TECRL Missense_Mutation p.L198I 0.52 tolerated(0.15) benign(0.024) TCGA-78-7220-01 4 65175610 65175610 G T TECRL Nonsense_Mutation p.Y197* 0.51 TCGA-78-7220-01 4 66197587 66197587 C G EPHA5 Intron 0.69 TCGA-78-7220-01 4 73171755 73171755 C A ADAMTS3 Missense_Mutation p.G737W 0.16 deleterious(0) probably_damaging(1) TCGA-78-7220-01 4 73957889 73957889 C G ANKRD17 Missense_Mutation p.G1819A 0.20 benign(0.003) TCGA-78-7220-01 4 76781940 76781940 G A PPEF2 Silent p.I714I 0.33 TCGA-78-7220-01 4 81967765 81967765 A T BMP3 Missense_Mutation p.Y397F 0.63 tolerated(0.07) benign(0.136) TCGA-78-7220-01 4 85416846 85416846 C G NKX6-1 Silent p.G274G 0.57 TCGA-78-7220-01 4 85661484 85661484 T A WDFY3 Missense_Mutation p.H2107L 0.64 tolerated(0.21) benign(0.053) TCGA-78-7220-01 4 8605878 8605878 C A CPZ Silent p.V224V 0.34 TCGA-78-7220-01 4 87726463 87726463 G T PTPN13 Missense_Mutation p.C2234F 0.39 tolerated(0.07) probably_damaging(1) TCGA-78-7220-01 4 88732883 88732883 T A IBSP Missense_Mutation p.Y259N 0.56 tolerated(0.07) probably_damaging(1) TCGA-78-7220-01 4 90816330 90816330 G T MMRN1 Nonsense_Mutation p.E70* 0.49 TCGA-78-7220-01 5 102490377 102490377 T C PPIP5K2 Silent p.F407F 0.57 TCGA-78-7220-01 5 112174767 112174767 C T APC Missense_Mutation p.P1159L 0.50 benign(0.392) TCGA-78-7220-01 5 112175364 112175364 C T APC Missense_Mutation p.A1358V 0.71 probably_damaging(0.998) TCGA-78-7220-01 5 115338575 115338575 A T AQPEP Missense_Mutation p.T622S 0.53 tolerated(0.85) benign(0.007) TCGA-78-7220-01 5 118788246 118788246 G C HSD17B4 5'Flank 0.58 TCGA-78-7220-01 5 1212452 1212452 G T SLC6A19 Silent p.V172V 0.18 TCGA-78-7220-01 5 1219182 1219182 C T SLC6A19 Silent p.L446L 0.12 TCGA-78-7220-01 5 1245999 1245999 G T SLC6A18 Missense_Mutation p.G565C 0.63 deleterious(0.03) probably_damaging(0.95) TCGA-78-7220-01 5 130808405 130808405 C A RAPGEF6 Missense_Mutation p.S705I 0.50 deleterious(0) probably_damaging(0.998) TCGA-78-7220-01 5 131308509 131308509 C - ACSL6 Frame_Shift_Del p.E416Sfs*40 0.46 TCGA-78-7220-01 5 135283102 135283102 G T LECT2 Missense_Mutation p.P125H 0.53 deleterious(0) probably_damaging(0.996) TCGA-78-7220-01 5 136324289 136324289 G T SPOCK1 Silent p.G250G 0.67 TCGA-78-7220-01 5 137497802 137497802 C T BRD8 Silent p.Q707Q 0.60 TCGA-78-7220-01 5 13811776 13811776 G A DNAH5 Nonsense_Mutation p.Q2463* 0.08 TCGA-78-7220-01 5 140167448 140167448 C A PCDHA1 Missense_Mutation p.H525N 0.63 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-78-7220-01 5 140516438 140516438 C A PCDHB5 Silent p.A474A 0.61 TCGA-78-7220-01 5 140516728 140516728 G T PCDHB5 Missense_Mutation p.C571F 0.59 deleterious_low_confidence(0.04) benign(0.087) TCGA-78-7220-01 5 140531635 140531635 G T PCDHB6 Missense_Mutation p.W599C 0.58 deleterious(0) probably_damaging(0.993) TCGA-78-7220-01 5 140589970 140589970 C A PCDHB12 Missense_Mutation p.H497Q 0.58 tolerated_low_confidence(0.76) benign(0.034) TCGA-78-7220-01 5 140590200 140590200 A T PCDHB12 Missense_Mutation p.E574V 0.60 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-78-7220-01 5 140603174 140603174 T A PCDHB14 Missense_Mutation p.Y33N 0.59 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-78-7220-01 5 140741279 140741279 G A PCDHGB2 Missense_Mutation p.R526H 0.69 tolerated(0.05) benign(0.344) TCGA-78-7220-01 5 140793178 140793178 A T PCDHGA10 Missense_Mutation p.I146F 0.79 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-78-7220-01 5 1422086 1422086 G A SLC6A3 Silent p.L233L 0.27 TCGA-78-7220-01 5 145502103 145502103 G C LARS Missense_Mutation p.I1048M 0.26 tolerated(0.08) benign(0.005) TCGA-78-7220-01 5 146780284 146780284 G T DPYSL3 Silent p.R475R 0.63 TCGA-78-7220-01 5 146781122 146781122 T A DPYSL3 Missense_Mutation p.I431F 0.54 deleterious(0) benign(0.435) TCGA-78-7220-01 5 149206254 149206254 G T PPARGC1B Missense_Mutation p.A91S 0.55 deleterious(0.01) probably_damaging(0.997) TCGA-78-7220-01 5 150947983 150947983 C A FAT2 Silent p.V170V 0.54 TCGA-78-7220-01 5 154179525 154179525 G C LARP1 Missense_Mutation p.A470P 0.54 deleterious(0.01) probably_damaging(0.964) TCGA-78-7220-01 5 156907982 156907982 C T ADAM19 Missense_Mutation p.G911E 0.12 deleterious_low_confidence(0.04) benign(0.006) TCGA-78-7220-01 5 158139337 158139337 G A EBF1 Silent p.F458F 0.25 TCGA-78-7220-01 5 15928107 15928107 C A FBXL7 Missense_Mutation p.S79Y 0.17 deleterious(0) benign(0.446) TCGA-78-7220-01 5 15928497 15928497 A G FBXL7 Missense_Mutation p.Q209R 0.10 tolerated(1) benign(0) TCGA-78-7220-01 5 15936912 15936915 GACG CCT FBXL7 Frame_Shift_Del p.D365Pfs*61 0.13 TCGA-78-7220-01 5 16091087 16091087 G T MARCH11 Missense_Mutation p.A266D 0.82 deleterious(0.03) possibly_damaging(0.76) TCGA-78-7220-01 5 161495008 161495008 G T GABRG2 Translation_Start_Site p.M1? 0.72 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-78-7220-01 5 16668542 16668542 C T MYO10 Silent p.L1973L 0.06 TCGA-78-7220-01 5 169174459 169174459 C T DOCK2 Missense_Mutation p.S776F 0.46 deleterious(0) probably_damaging(0.923) TCGA-78-7220-01 5 169685089 169685089 G T LCP2 Missense_Mutation p.P351H 0.60 deleterious(0) possibly_damaging(0.527) TCGA-78-7220-01 5 173534487 173534487 G C NSG2 Silent p.P165P 0.09 TCGA-78-7220-01 5 174869204 174869204 G A DRD1 Missense_Mutation p.S300F 0.62 tolerated(0.05) possibly_damaging(0.608) TCGA-78-7220-01 5 176295567 176295567 C A UNC5A Missense_Mutation p.R148S 0.67 deleterious(0.03) possibly_damaging(0.843) TCGA-78-7220-01 5 176370372 176370372 C T UIMC1 Missense_Mutation p.A521T 0.56 deleterious(0) probably_damaging(1) TCGA-78-7220-01 5 176915218 176915218 A T PDLIM7 Missense_Mutation p.Y301N 0.58 deleterious(0) possibly_damaging(0.839) TCGA-78-7220-01 5 177019589 177019589 G C TMED9 Silent p.T66T 0.61 TCGA-78-7220-01 5 180053196 180053196 C A FLT4 Missense_Mutation p.E391D 0.58 deleterious(0) probably_damaging(0.976) TCGA-78-7220-01 5 21752253 21752253 A T CDH12 Missense_Mutation p.Y660N 0.20 deleterious(0) probably_damaging(1) TCGA-78-7220-01 5 24509715 24509715 C A CDH10 Missense_Mutation p.V406L 0.18 deleterious(0.02) possibly_damaging(0.558) TCGA-78-7220-01 5 24535284 24535284 C A CDH10 Missense_Mutation p.G251W 0.20 deleterious(0) probably_damaging(1) TCGA-78-7220-01 5 26988308 26988308 C A CDH9 Missense_Mutation p.G45C 0.13 deleterious(0.01) benign(0.443) TCGA-78-7220-01 5 2747690 2747690 C A IRX2 Missense_Mutation p.Q468H 0.11 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-78-7220-01 5 2749643 2749643 G T IRX2 Silent p.R170R 0.08 TCGA-78-7220-01 5 31532426 31532426 G T C5orf22 5'UTR 0.09 TCGA-78-7220-01 5 33683166 33683167 - T ADAMTS12 Frame_Shift_Ins p.I291Nfs*30 0.17 TCGA-78-7220-01 5 34028929 34028929 G A C1QTNF3 Silent p.F210F 0.20 TCGA-78-7220-01 5 35014185 35014185 C T AGXT2 Missense_Mutation p.G335S 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-78-7220-01 5 35641643 35641643 G T SPEF2 Missense_Mutation p.G91V 0.60 deleterious(0) probably_damaging(1) TCGA-78-7220-01 5 3599649 3599649 G T IRX1 Missense_Mutation p.R196L 0.15 deleterious(0) probably_damaging(0.931) TCGA-78-7220-01 5 3599692 3599692 C T IRX1 Silent p.T210T 0.11 TCGA-78-7220-01 5 36677122 36677122 C - SLC1A3 Frame_Shift_Del p.P233Qfs*6 0.13 TCGA-78-7220-01 5 37048653 37048653 G C NIPBL Missense_Mutation p.K2213N 0.08 deleterious(0) probably_damaging(0.996) TCGA-78-7220-01 5 38352374 38352374 G T EGFLAM Missense_Mutation p.W162C 0.12 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-78-7220-01 5 38512038 38512038 T A LIFR Missense_Mutation p.K197I 0.16 deleterious(0.03) benign(0.283) TCGA-78-7220-01 5 41061781 41061781 C T MROH2B Nonsense_Mutation p.W169* 0.16 TCGA-78-7220-01 5 41313773 41313773 G T PLCXD3 Silent p.I304I 0.48 TCGA-78-7220-01 5 434632 434632 G T AHRR Missense_Mutation p.G615W 0.06 deleterious(0) probably_damaging(0.974) TCGA-78-7220-01 5 45303720 45303720 T C HCN1 Silent p.T533T 0.66 TCGA-78-7220-01 5 477530 477530 G A SLC9A3 Silent p.I559I 0.14 TCGA-78-7220-01 5 5303853 5303853 C A ADAMTS16 Missense_Mutation p.Q1054K 0.13 deleterious(0.01) benign(0.322) TCGA-78-7220-01 5 5457564 5457564 A C KIAA0947 Missense_Mutation p.M271L 0.17 tolerated(0.24) benign(0.114) TCGA-78-7220-01 5 5464733 5464733 G T KIAA0947 Missense_Mutation p.R1762S 0.22 deleterious(0) probably_damaging(0.999) TCGA-78-7220-01 5 71740080 71740080 C A ZNF366 Missense_Mutation p.G580C 0.62 deleterious(0) possibly_damaging(0.888) TCGA-78-7220-01 5 75979598 75979598 C T IQGAP2 Intron 0.59 TCGA-78-7220-01 5 7773174 7773174 G A ADCY2 Missense_Mutation p.A782T 0.09 tolerated(0.15) benign(0.102) TCGA-78-7220-01 5 78076396 78076396 C T ARSB Missense_Mutation p.D476N 0.59 tolerated(1) benign(0.069) TCGA-78-7220-01 5 9044614 9044614 G T SEMA5A Nonsense_Mutation p.Y992* 0.22 TCGA-78-7220-01 5 9054240 9054240 A T SEMA5A Missense_Mutation p.L883Q 0.32 tolerated(0.27) probably_damaging(1) TCGA-78-7220-01 5 95067822 95067822 A G RHOBTB3 Intron 0.61 TCGA-78-7220-01 6 102074278 102074278 G T GRIK2 Missense_Mutation p.V103L 0.41 tolerated(0.05) benign(0.042) TCGA-78-7220-01 6 102376414 102376414 G A GRIK2 Missense_Mutation p.M664I 0.47 deleterious(0) probably_damaging(0.992) TCGA-78-7220-01 6 106960402 106960402 G T AIM1 Silent p.P62P 0.58 TCGA-78-7220-01 6 112439022 112439022 G A LAMA4 Missense_Mutation p.T1634I 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-78-7220-01 6 116442518 116442518 G A COL10A1 Missense_Mutation p.P254L 0.22 tolerated(0.52) unknown(0) TCGA-78-7220-01 6 116832923 116832923 T G FAM26E Missense_Mutation p.F22V 0.08 tolerated(0.4) benign(0.101) TCGA-78-7220-01 6 129470160 129470160 G T LAMA2 Missense_Mutation p.D316Y 0.32 deleterious(0) probably_damaging(0.968) TCGA-78-7220-01 6 129511369 129511369 A T LAMA2 Missense_Mutation p.D496V 0.35 deleterious(0.01) possibly_damaging(0.735) TCGA-78-7220-01 6 130467243 130467243 T A SAMD3 Silent p.I369I 0.22 TCGA-78-7220-01 6 136599075 136599075 G T BCLAF1 Missense_Mutation p.S315Y 0.21 deleterious_low_confidence(0) benign(0.144) TCGA-78-7220-01 6 136599636 136599636 C A BCLAF1 Missense_Mutation p.R128I 0.16 deleterious_low_confidence(0) unknown(0) TCGA-78-7220-01 6 137815061 137815061 G A OLIG3 Nonsense_Mutation p.Q83* 0.41 TCGA-78-7220-01 6 152668194 152668194 C G SYNE1 Missense_Mutation p.R4026S 0.67 possibly_damaging(0.724) TCGA-78-7220-01 6 152949624 152949624 C G SYNE1 5'UTR 0.33 TCGA-78-7220-01 6 161015066 161015066 T G LPA Missense_Mutation p.T1185P 0.58 deleterious(0.03) probably_damaging(0.988) TCGA-78-7220-01 6 16144081 16144081 C G MYLIP Missense_Mutation p.H272D 0.18 deleterious(0) probably_damaging(0.973) TCGA-78-7220-01 6 17601330 17601330 G T FAM8A1 Silent p.P230P 0.53 TCGA-78-7220-01 6 17633037 17633037 C G NUP153 Missense_Mutation p.V835L 0.42 tolerated(0.27) benign(0.002) TCGA-78-7220-01 6 20758835 20758835 A G CDKAL1 Missense_Mutation p.I160V 0.39 deleterious(0.03) possibly_damaging(0.893) TCGA-78-7220-01 6 24403334 24403334 G A MRS2 Silent p.R20R 0.47 TCGA-78-7220-01 6 26031997 26031997 C A HIST1H3B Nonsense_Mutation p.E98* 0.25 TCGA-78-7220-01 6 28540716 28540716 C A SCAND3 Missense_Mutation p.V984L 0.39 tolerated(0.09) benign(0.038) TCGA-78-7220-01 6 29231623 29231623 C T XXbac-BPG308J9.3 RNA 0.27 TCGA-78-7220-01 6 30153984 30153984 T A TRIM26 Missense_Mutation p.E430V 0.44 deleterious_low_confidence(0.01) unknown(0) TCGA-78-7220-01 6 30653695 30653695 G A PPP1R18 Missense_Mutation p.S34F 0.24 deleterious(0) possibly_damaging(0.868) TCGA-78-7220-01 6 30691915 30691915 G C TUBB Missense_Mutation p.R359P 0.43 deleterious_low_confidence(0.03) possibly_damaging(0.804) TCGA-78-7220-01 6 32012931 32012931 C A TNXB Silent p.T22T 0.15 TCGA-78-7220-01 6 32159165 32159165 C T GPSM3 Missense_Mutation p.R154Q 0.22 tolerated(0.26) benign(0.007) TCGA-78-7220-01 6 34004361 34004361 G T GRM4 Missense_Mutation p.P509Q 0.24 deleterious(0.04) possibly_damaging(0.778) TCGA-78-7220-01 6 34214912 34214912 C A C6orf1 Missense_Mutation p.A12S 0.18 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-78-7220-01 6 35716549 35716549 G T ARMC12 Missense_Mutation p.A336S 0.52 deleterious(0.01) possibly_damaging(0.753) TCGA-78-7220-01 6 37614116 37614116 C A MDGA1 Silent p.P694P 0.21 TCGA-78-7220-01 6 38548069 38548069 G A BTBD9 Missense_Mutation p.S320F 0.22 deleterious(0.02) unknown(0) TCGA-78-7220-01 6 38746233 38746233 C T DNAH8 Missense_Mutation p.L461F 0.11 probably_damaging(0.99) TCGA-78-7220-01 6 4052958 4052958 A T PRPF4B Missense_Mutation p.N773Y 0.27 deleterious(0) unknown(0) TCGA-78-7220-01 6 42152572 42152572 C A GUCA1B Missense_Mutation p.R195L 0.68 deleterious(0.03) benign(0.411) TCGA-78-7220-01 6 42236706 42236706 G A TRERF1 Missense_Mutation p.P208L 0.61 tolerated_low_confidence(0.08) benign(0.181) TCGA-78-7220-01 6 42561937 42561937 A T UBR2 Silent p.T142T 0.63 TCGA-78-7220-01 6 47763237 47763237 G T OPN5 Nonsense_Mutation p.E232* 0.24 TCGA-78-7220-01 6 49582522 49582522 T C RHAG Missense_Mutation p.I229V 0.58 tolerated(0.29) benign(0.061) TCGA-78-7220-01 6 49754977 49754977 G A PGK2 5'UTR 0.15 TCGA-78-7220-01 6 54254685 54254685 G A TINAG Missense_Mutation p.A465T 0.51 tolerated(0.06) possibly_damaging(0.902) TCGA-78-7220-01 6 54792315 54792315 G T FAM83B Missense_Mutation p.V207L 0.43 deleterious(0.01) benign(0.364) TCGA-78-7220-01 6 54806408 54806408 G C FAM83B Missense_Mutation p.R880T 0.36 tolerated(0.79) benign(0.003) TCGA-78-7220-01 6 56535503 56535503 A T DST Missense_Mutation p.C173S 0.29 probably_damaging(0.999) TCGA-78-7220-01 6 56919147 56919147 G T KIAA1586 Missense_Mutation p.R617L 0.45 tolerated(0.1) possibly_damaging(0.763) TCGA-78-7220-01 6 6266857 6266857 C T F13A1 Missense_Mutation p.G169S 0.29 deleterious(0) probably_damaging(1) TCGA-78-7220-01 6 70859767 70859767 C A COL19A1 Missense_Mutation p.P652T 0.58 deleterious(0) probably_damaging(0.999) TCGA-78-7220-01 6 73023352 73023352 T G RIMS1 Silent p.S1369S 0.39 TCGA-78-7220-01 6 75827178 75827178 A G COL12A1 Missense_Mutation p.V2480A 0.28 probably_damaging(0.997) TCGA-78-7220-01 6 88854435 88854435 T A CNR1 Missense_Mutation p.N187Y 0.28 deleterious(0.02) probably_damaging(0.99) TCGA-78-7220-01 6 90382967 90382967 C G MDN1 Missense_Mutation p.D4488H 0.40 benign(0.002) TCGA-78-7220-01 6 96651316 96651316 G T FUT9 Silent p.T95T 0.35 TCGA-78-7220-01 7 100466258 100466258 C A TRIP6 Missense_Mutation p.P169T 0.63 tolerated(1) possibly_damaging(0.629) TCGA-78-7220-01 7 100679101 100679101 C T MUC17 Silent p.A1468A 0.61 TCGA-78-7220-01 7 10979642 10979642 C T NDUFA4 Splice_Site p.X14_splice 0.61 TCGA-78-7220-01 7 123508412 123508412 C A HYAL4 Missense_Mutation p.L29I 0.49 tolerated(0.14) benign(0.421) TCGA-78-7220-01 7 128502970 128502970 G T ATP6V1F Missense_Mutation p.R4S 0.50 deleterious(0.04) possibly_damaging(0.492) TCGA-78-7220-01 7 128851576 128851576 C T SMO Missense_Mutation p.P634L 0.63 deleterious(0) possibly_damaging(0.463) TCGA-78-7220-01 7 137028281 137028281 C T PTN 5'UTR 0.63 TCGA-78-7220-01 7 142168650 142168650 G T TRBV5-4 Missense_Mutation p.Q25K 0.19 deleterious(0) possibly_damaging(0.779) TCGA-78-7220-01 7 142423424 142423424 C A TRBV27 Missense_Mutation p.P27Q 0.29 TCGA-78-7220-01 7 148709025 148709025 C G PDIA4 Missense_Mutation p.E298Q 0.25 tolerated(0.08) benign(0.13) TCGA-78-7220-01 7 150754938 150754938 C G CDK5 5'UTR 0.24 TCGA-78-7220-01 7 151097211 151097211 G C WDR86 Missense_Mutation p.R94G 0.67 deleterious(0) possibly_damaging(0.823) TCGA-78-7220-01 7 158734681 158734681 G T WDR60 Missense_Mutation p.W948C 0.62 deleterious(0) possibly_damaging(0.893) TCGA-78-7220-01 7 35242262 35242262 A T TBX20 Missense_Mutation p.I375K 0.44 deleterious_low_confidence(0.01) benign(0.043) TCGA-78-7220-01 7 39379420 39379420 G A POU6F2 Missense_Mutation p.A231T 0.78 tolerated_low_confidence(0.21) unknown(0) TCGA-78-7220-01 7 42005090 42005090 C G GLI3 Missense_Mutation p.C1194S 0.59 tolerated_low_confidence(0.1) benign(0.019) TCGA-78-7220-01 7 44098477 44098477 G C DBNL Missense_Mutation p.G253R 0.48 tolerated(0.53) benign(0.001) TCGA-78-7220-01 7 44579553 44579553 C A NPC1L1 Missense_Mutation p.G148V 0.44 tolerated(0.12) benign(0.018) TCGA-78-7220-01 7 47342884 47342884 G A TNS3 Silent p.L1041L 0.16 TCGA-78-7220-01 7 55874921 55874921 T A SEPT14 Missense_Mutation p.K283M 0.50 deleterious(0) probably_damaging(0.993) TCGA-78-7220-01 7 7476025 7476025 C A COL28A1 Splice_Site p.X620_splice 0.33 TCGA-78-7220-01 7 76109892 76109892 G C DTX2 Missense_Mutation p.W22C 0.60 deleterious(0) probably_damaging(1) TCGA-78-7220-01 7 7622761 7622761 G T MIOS Missense_Mutation p.S469I 0.47 tolerated(0.06) benign(0.223) TCGA-78-7220-01 7 87563826 87563826 G T ADAM22 Missense_Mutation p.V16F 0.57 tolerated_low_confidence(0.09) benign(0.001) TCGA-78-7220-01 7 8791420 8791420 C T NXPH1 3'UTR 0.33 TCGA-78-7220-01 7 93536150 93536150 T A GNGT1 Missense_Mutation p.M31K 0.59 tolerated(0.92) benign(0) TCGA-78-7220-01 7 94049940 94049940 G T COL1A2 Missense_Mutation p.V759F 0.69 unknown(0) TCGA-78-7220-01 7 99091842 99091842 G T ZNF394 Missense_Mutation p.H332Q 0.62 tolerated(0.07) benign(0.014) TCGA-78-7220-01 8 10177392 10177392 G A MSRA Splice_Site p.X146_splice 0.35 TCGA-78-7220-01 8 107715304 107715304 G T OXR1 Missense_Mutation p.K283N 0.21 deleterious(0) possibly_damaging(0.77) TCGA-78-7220-01 8 107782449 107782449 C A ABRA 5'UTR 0.15 TCGA-78-7220-01 8 110454385 110454385 G T PKHD1L1 Missense_Mutation p.G1452C 0.39 deleterious(0) probably_damaging(0.979) TCGA-78-7220-01 8 113418791 113418791 G T CSMD3 Missense_Mutation p.S1924Y 0.31 deleterious(0) possibly_damaging(0.507) TCGA-78-7220-01 8 113871459 113871459 C G CSMD3 Missense_Mutation p.G557A 0.20 deleterious(0.04) probably_damaging(0.976) TCGA-78-7220-01 8 123964312 123964312 A T ZHX2 Nonsense_Mutation p.K188* 0.24 TCGA-78-7220-01 8 124204147 124204147 G T FAM83A Missense_Mutation p.Q195H 0.39 tolerated(0.54) benign(0.015) TCGA-78-7220-01 8 133036859 133036859 C T OC90 Missense_Mutation p.A435T 0.09 tolerated(0.09) benign(0.377) TCGA-78-7220-01 8 133984884 133984884 C A TG Missense_Mutation p.Q2033K 0.24 deleterious(0.01) probably_damaging(0.985) TCGA-78-7220-01 8 135614721 135614721 T C ZFAT Missense_Mutation p.K414R 0.49 deleterious(0) probably_damaging(0.996) TCGA-78-7220-01 8 139149421 139149421 C A FAM135B Missense_Mutation p.M1328I 0.30 deleterious(0.01) benign(0.217) TCGA-78-7220-01 8 143957127 143957127 C T CYP11B1 Splice_Site p.X374_splice 0.46 TCGA-78-7220-01 8 143996490 143996490 C A CYP11B2 Missense_Mutation p.Q189H 0.42 tolerated(0.21) probably_damaging(0.934) TCGA-78-7220-01 8 20110569 20110569 G A LZTS1 Silent p.S291S 0.39 TCGA-78-7220-01 8 22333113 22333113 G T PPP3CC Silent p.V116V 0.27 TCGA-78-7220-01 8 23106757 23106757 G T CHMP7 Missense_Mutation p.A112S 0.29 tolerated(0.31) benign(0.032) TCGA-78-7220-01 8 27660857 27660857 G T ESCO2 Missense_Mutation p.D570Y 0.45 deleterious(0) probably_damaging(0.981) TCGA-78-7220-01 8 27729354 27729354 G T SCARA5 3'UTR 0.40 TCGA-78-7220-01 8 27927068 27927068 A T NUGGC Missense_Mutation p.Y84N 0.29 deleterious(0) probably_damaging(0.98) TCGA-78-7220-01 8 3045415 3045415 C A CSMD1 Missense_Mutation p.A1866S 0.33 benign(0.135) TCGA-78-7220-01 8 30889686 30889686 C A PURG Missense_Mutation p.G205W 0.33 deleterious(0) probably_damaging(1) TCGA-78-7220-01 8 30889852 30889852 C A PURG Missense_Mutation p.R149S 0.31 tolerated_low_confidence(0.17) possibly_damaging(0.473) TCGA-78-7220-01 8 35406952 35406952 G T UNC5D Missense_Mutation p.Q82H 0.39 deleterious(0) probably_damaging(0.998) TCGA-78-7220-01 8 35583795 35583795 C A UNC5D Missense_Mutation p.P477T 0.43 deleterious(0) probably_damaging(0.953) TCGA-78-7220-01 8 36793178 36793178 C A KCNU1 Missense_Mutation p.Q1064K 0.44 tolerated(0.93) benign(0.019) TCGA-78-7220-01 8 37687390 37687390 G A GPR124 Silent p.L192L 0.15 TCGA-78-7220-01 8 3889606 3889606 G A CSMD1 Missense_Mutation p.T144I 0.22 probably_damaging(0.999) TCGA-78-7220-01 8 51571162 51571162 G T SNTG1 Missense_Mutation p.W326L 0.14 tolerated(0.88) benign(0.002) TCGA-78-7220-01 8 52359673 52359673 A G PXDNL Silent p.T472T 0.12 TCGA-78-7220-01 8 62438643 62438643 C A ASPH Missense_Mutation p.R598L 0.24 deleterious(0.02) probably_damaging(0.964) TCGA-78-7220-01 8 77767421 77767421 C A ZFHX4 Missense_Mutation p.P2755H 0.44 probably_damaging(0.998) TCGA-78-7220-01 8 77776583 77776583 C A ZFHX4 Missense_Mutation p.P3545T 0.24 probably_damaging(0.996) TCGA-78-7220-01 8 86114436 86114436 G T E2F5 Missense_Mutation p.V97F 0.15 deleterious(0) probably_damaging(1) TCGA-78-7220-01 8 87242216 87242216 G T SLC7A13 Silent p.L97L 0.29 TCGA-78-7220-01 8 87679304 87679304 C A CNGB3 Missense_Mutation p.C234F 0.50 deleterious(0) benign(0) TCGA-78-7220-01 8 88885555 88885555 C T DCAF4L2 Silent p.T215T 0.37 TCGA-78-7220-01 8 91094961 91094961 G T CALB1 5'UTR 0.52 TCGA-78-7220-01 8 92090777 92090777 A T OTUD6B Missense_Mutation p.K200M 0.25 deleterious(0.04) benign(0.041) TCGA-78-7220-01 8 92407414 92407414 G T SLC26A7 3'Flank 0.23 TCGA-78-7220-01 8 97311995 97311995 G A PTDSS1 Missense_Mutation p.C225Y 0.26 deleterious(0) probably_damaging(0.984) TCGA-78-7220-01 8 99158833 99158833 G T POP1 Silent p.V544V 0.28 TCGA-78-7220-01 9 104238675 104238675 C A TMEM246 Nonsense_Mutation p.E234* 0.63 TCGA-78-7220-01 9 104432734 104432734 C A GRIN3A Missense_Mutation p.G654C 0.63 deleterious(0) probably_damaging(1) TCGA-78-7220-01 9 104499983 104499983 C A GRIN3A Silent p.P93P 0.69 TCGA-78-7220-01 9 107591242 107591242 G A ABCA1 Silent p.L690L 0.62 TCGA-78-7220-01 9 116356346 116356346 G - RGS3 Intron 0.39 TCGA-78-7220-01 9 116854137 116854137 G A KIF12 3'UTR 0.15 TCGA-78-7220-01 9 119625958 119625958 G T ASTN2 Silent p.S597S 0.66 TCGA-78-7220-01 9 125563280 125563280 C T OR1K1 Silent p.L293L 0.33 TCGA-78-7220-01 9 127982956 127982956 C T RABEPK Missense_Mutation p.T168M 0.07 tolerated(0.11) benign(0.38) TCGA-78-7220-01 9 133730335 133730335 G T ABL1 Missense_Mutation p.R153L 0.68 deleterious(0.01) probably_damaging(0.999) TCGA-78-7220-01 9 134351752 134351752 G T PRRC2B Missense_Mutation p.E1412D 0.50 tolerated(0.13) probably_damaging(0.992) TCGA-78-7220-01 9 137622312 137622312 C T COL5A1 Silent p.N385N 0.69 TCGA-78-7220-01 9 140970323 140970323 A G CACNA1B Missense_Mutation p.N1637S 0.63 deleterious(0.01) probably_damaging(0.997) TCGA-78-7220-01 9 2717772 2717772 G A KCNV2 Nonsense_Mutation p.W11* 0.19 TCGA-78-7220-01 9 33464892 33464892 T A NOL6 Missense_Mutation p.N922Y 0.52 deleterious(0) probably_damaging(0.999) TCGA-78-7220-01 9 43627844 43627844 G T SPATA31A6 Silent p.S281S 0.58 TCGA-78-7220-01 9 6506037 6506037 G C UHRF2 Missense_Mutation p.C756S 0.72 deleterious(0.01) probably_damaging(0.985) TCGA-78-7220-01 9 71094399 71094399 G T PGM5 Missense_Mutation p.A409S 0.57 tolerated(0.37) benign(0.05) TCGA-78-7220-01 9 71863027 71863027 G A TJP2 Missense_Mutation p.E954K 0.52 deleterious(0.01) probably_damaging(0.987) TCGA-78-7220-01 9 79955413 79955413 A T VPS13A Missense_Mutation p.I2325L 0.60 tolerated(1) benign(0.008) TCGA-78-7220-01 9 893983 893983 G T DMRT1 Missense_Mutation p.V204F 0.61 deleterious(0) possibly_damaging(0.617) TCGA-78-7220-01 X 101970908 101970908 G T GPRASP2 Missense_Mutation p.D371Y 0.51 deleterious(0) benign(0.019) TCGA-78-7220-01 X 105011768 105011768 C G IL1RAPL2 3'UTR 0.45 TCGA-78-7220-01 X 10535354 10535354 G C MID1 Silent p.T78T 0.12 TCGA-78-7220-01 X 10535481 10535481 C A MID1 Missense_Mutation p.R36L 0.24 deleterious(0.01) probably_damaging(0.989) TCGA-78-7220-01 X 10535483 10535483 G T MID1 Missense_Mutation p.H35Q 0.24 tolerated(0.07) probably_damaging(0.95) TCGA-78-7220-01 X 110492209 110492209 C T CAPN6 Missense_Mutation p.R412Q 0.43 deleterious(0.03) possibly_damaging(0.857) TCGA-78-7220-01 X 114251862 114251862 C A IL13RA2 5'UTR 0.52 TCGA-78-7220-01 X 115593006 115593006 C T CT83 Missense_Mutation p.V82I 0.51 tolerated(0.23) benign(0.086) TCGA-78-7220-01 X 119077613 119077613 C T NKAP 5'UTR 0.45 TCGA-78-7220-01 X 127185046 127185046 C A ACTRT1 3'UTR 0.45 TCGA-78-7220-01 X 12734242 12734242 C G FRMPD4 Missense_Mutation p.P555R 0.23 deleterious(0.02) benign(0.374) TCGA-78-7220-01 X 12735853 12735853 G T FRMPD4 Missense_Mutation p.A970S 0.33 tolerated_low_confidence(0.99) benign(0.003) TCGA-78-7220-01 X 130410142 130410142 C A IGSF1 Missense_Mutation p.G902W 0.45 deleterious(0) probably_damaging(0.999) TCGA-78-7220-01 X 13337040 13337040 G T ATXN3L Silent p.V338V 0.26 TCGA-78-7220-01 X 135427807 135427807 C A GPR112 Missense_Mutation p.L648M 0.49 deleterious(0.02) benign(0.275) TCGA-78-7220-01 X 13635949 13635949 G T EGFL6 Missense_Mutation p.K293N 0.39 tolerated(0.35) probably_damaging(0.999) TCGA-78-7220-01 X 140969261 140969261 C G MAGEC3 Silent p.L196L 0.47 TCGA-78-7220-01 X 145075870 145075870 C A MIR888 3'Flank 0.62 TCGA-78-7220-01 X 145109355 145109355 T C MIR891A RNA 0.70 TCGA-78-7220-01 X 14550453 14550453 G T GLRA2 Missense_Mutation p.R54M 0.26 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-78-7220-01 X 152818492 152818492 G A ATP2B3 Splice_Site p.X608_splice 0.63 TCGA-78-7220-01 X 152915742 152915742 C A DUSP9 Missense_Mutation p.F379L 0.07 deleterious(0.01) probably_damaging(0.98) TCGA-78-7220-01 X 153129862 153129862 G T L1CAM Missense_Mutation p.D1079E 0.65 tolerated(0.06) benign(0.04) TCGA-78-7220-01 X 153363093 153363093 G A MECP2 Silent p.S10S 0.41 TCGA-78-7220-01 X 153363094 153363094 C A MECP2 Missense_Mutation p.S10I 0.41 deleterious_low_confidence(0) unknown(0) TCGA-78-7220-01 X 153549129 153549129 C T TKTL1 Missense_Mutation p.S352F 0.43 deleterious(0.05) benign(0.288) TCGA-78-7220-01 X 154128184 154128184 G T F8 Nonsense_Mutation p.S2077* 0.39 TCGA-78-7220-01 X 17095415 17095415 A T REPS2 Silent p.I467I 0.27 TCGA-78-7220-01 X 19045370 19045370 G A GPR64 Missense_Mutation p.T146I 0.27 tolerated_low_confidence(0.18) possibly_damaging(0.866) TCGA-78-7220-01 X 19045378 19045378 C A GPR64 Silent p.T143T 0.28 TCGA-78-7220-01 X 21875379 21875379 C G YY2 Missense_Mutation p.S259R 0.27 tolerated(0.06) benign(0.069) TCGA-78-7220-01 X 2942084 2942084 C A ARSH Missense_Mutation p.D308E 0.20 tolerated(0.35) benign(0.007) TCGA-78-7220-01 X 2990163 2990163 G T ARSF Missense_Mutation p.M36I 0.24 deleterious(0.03) benign(0.279) TCGA-78-7220-01 X 302133 302133 T C PPP2R3B Splice_Site p.X362_splice 0.28 TCGA-78-7220-01 X 30326398 30326398 G C NR0B1 Missense_Mutation p.I361M 0.34 tolerated(0.09) probably_damaging(0.998) TCGA-78-7220-01 X 32486649 32486649 A G DMD Missense_Mutation p.L1043P 0.28 probably_damaging(0.969) TCGA-78-7220-01 X 34962111 34962111 G T FAM47B Missense_Mutation p.R388L 0.22 tolerated(0.06) benign(0.434) TCGA-78-7220-01 X 37893045 37893045 G A SYTL5 5'UTR 0.21 TCGA-78-7220-01 X 39916426 39916426 C A BCOR Missense_Mutation p.S1526I 0.36 deleterious(0) probably_damaging(0.997) TCGA-78-7220-01 X 46918164 46918164 C A JADE3 Silent p.T719T 0.26 TCGA-78-7220-01 X 47028841 47028841 G A RBM10 Missense_Mutation p.G49S 0.34 tolerated(0.22) benign(0.01) TCGA-78-7220-01 X 47045892 47045892 G T RBM10 Missense_Mutation p.G896V 0.26 deleterious(0) probably_damaging(1) TCGA-78-7220-01 X 47065667 47065667 T C UBA1 Missense_Mutation p.C588R 0.24 deleterious(0) probably_damaging(1) TCGA-78-7220-01 X 47307811 47307811 T A ZNF41 Missense_Mutation p.H453L 0.27 deleterious(0) probably_damaging(0.997) TCGA-78-7220-01 X 47436854 47436854 T C SYN1 Missense_Mutation p.H274R 0.29 deleterious(0.02) probably_damaging(0.991) TCGA-78-7220-01 X 47518287 47518287 C A UXT Missense_Mutation p.G26W 0.29 deleterious(0.01) possibly_damaging(0.455) TCGA-78-7220-01 X 48317990 48317990 G A SLC38A5 Missense_Mutation p.P417S 0.21 deleterious(0) probably_damaging(1) TCGA-78-7220-01 X 48318237 48318237 A C SLC38A5 Missense_Mutation p.L365R 0.27 deleterious(0) probably_damaging(0.971) TCGA-78-7220-01 X 48374126 48374126 G T PORCN Missense_Mutation p.R323L 0.29 tolerated(0.06) benign(0.421) TCGA-78-7220-01 X 49034493 49034493 G T PRICKLE3 Silent p.G268G 0.20 TCGA-78-7220-01 X 49067055 49067055 A C CACNA1F Missense_Mutation p.C1505G 0.40 deleterious(0) benign(0.134) TCGA-78-7220-01 X 49067057 49067057 G T CACNA1F Missense_Mutation p.A1504D 0.41 deleterious(0) possibly_damaging(0.673) TCGA-78-7220-01 X 49192697 49192697 G A GAGE13 Silent p.P70P 0.28 TCGA-78-7220-01 X 49958815 49958815 T C AKAP4 Silent p.K183K 0.25 TCGA-78-7220-01 X 50659077 50659077 G T BMP15 Missense_Mutation p.G217C 0.28 tolerated(0.18) possibly_damaging(0.76) TCGA-78-7220-01 X 54107828 54107828 C G FAM120C Missense_Mutation p.A969P 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-78-7220-01 X 54159249 54159249 C A FAM120C Missense_Mutation p.E646D 0.38 tolerated(0.43) benign(0.052) TCGA-78-7220-01 X 54838629 54838629 C A MAGED2 Missense_Mutation p.H344N 0.26 tolerated(0.11) benign(0.241) TCGA-78-7220-01 X 57935121 57935121 T C ZXDA Silent p.L578L 0.29 TCGA-78-7220-01 X 5821159 5821159 G T NLGN4X Missense_Mutation p.S520R 0.29 deleterious(0.04) probably_damaging(0.988) TCGA-78-7220-01 X 70343476 70343476 G C MED12 Missense_Mutation p.K550N 0.42 probably_damaging(0.978) TCGA-78-7220-01 X 74513304 74513304 T A UPRT Intron 0.32 TCGA-78-7220-01 X 76907657 76907657 C A ATRX Nonsense_Mutation p.E1502* 0.45 TCGA-78-7220-01 X 85769353 85769353 C A DACH2 Missense_Mutation p.A200E 0.33 deleterious(0.02) benign(0.046) TCGA-78-7220-01 X 90691082 90691082 G T PABPC5 Missense_Mutation p.R169L 0.47 tolerated(1) benign(0.001) TCGA-78-7220-01 X 92927530 92927530 T C NAP1L3 Silent p.V258V 0.36 TCGA-78-7220-01 X 92928286 92928286 A T NAP1L3 Missense_Mutation p.F6L 0.22 tolerated_low_confidence(1) benign(0.003) TCGA-78-7535-01 10 119078424 119078424 T G PDZD8 Missense_Mutation p.S353R 0.20 deleterious(0.02) benign(0.007) TCGA-78-7535-01 10 13154608 13154608 A G OPTN Silent p.E175E 0.39 TCGA-78-7535-01 10 17083029 17083029 T C CUBN Intron 0.21 TCGA-78-7535-01 10 7325988 7325988 C T SFMBT2 Missense_Mutation p.R217H 0.42 tolerated(0.21) probably_damaging(0.917) TCGA-78-7535-01 10 73767038 73767038 C A CHST3 Silent p.L83L 0.69 TCGA-78-7535-01 10 75936604 75936604 C G ADK Intron 0.47 TCGA-78-7535-01 10 7608297 7608297 C T ITIH5 Silent p.L741L 0.57 TCGA-78-7535-01 10 7611748 7611748 C T ITIH5 Splice_Site p.X678_splice 0.19 TCGA-78-7535-01 11 100922259 100922259 A T PGR Silent p.I751I 0.29 TCGA-78-7535-01 11 101454093 101454093 G C TRPC6 Missense_Mutation p.L48V 0.39 tolerated_low_confidence(0.41) benign(0.024) TCGA-78-7535-01 11 110035866 110035866 A C ZC3H12C Silent p.R686R 0.20 TCGA-78-7535-01 11 117789384 117789384 G A TMPRSS13 Missense_Mutation p.T64I 0.36 deleterious_low_confidence(0) benign(0) TCGA-78-7535-01 11 124189725 124189725 A G OR8D2 Silent p.Y123Y 0.29 TCGA-78-7535-01 11 126306850 126306850 C A KIRREL3 Missense_Mutation p.V470L 0.35 deleterious(0) benign(0.193) TCGA-78-7535-01 11 126318921 126318921 C T KIRREL3 Missense_Mutation p.R327H 0.19 tolerated(0.05) probably_damaging(0.999) TCGA-78-7535-01 11 45925566 45925566 T G MAPK8IP1 Missense_Mutation p.L507R 0.07 deleterious(0) probably_damaging(1) TCGA-78-7535-01 11 4661574 4661574 A G OR51D1 Missense_Mutation p.H185R 0.59 tolerated(0.17) benign(0.001) TCGA-78-7535-01 11 55658922 55658922 C A TRIM51 Silent p.L391L 0.29 TCGA-78-7535-01 11 56058409 56058409 C G OR8H1 Missense_Mutation p.G44R 0.31 deleterious(0.01) probably_damaging(0.988) TCGA-78-7535-01 11 56058410 56058410 C A OR8H1 Silent p.V43V 0.30 TCGA-78-7535-01 11 5719619 5719619 G T TRIM22 Missense_Mutation p.E198D 0.50 deleterious(0) probably_damaging(0.91) TCGA-78-7535-01 11 5842468 5842468 G T OR52N2 Missense_Mutation p.Q301H 0.59 deleterious(0.01) benign(0.021) TCGA-78-7535-01 11 59834462 59834462 A T MS4A3 Silent p.T130T 0.55 TCGA-78-7535-01 11 70220910 70220910 C T PPFIA1 Intron 0.31 TCGA-78-7535-01 12 22487150 22487150 C T ST8SIA1 Missense_Mutation p.R6Q 0.49 tolerated_low_confidence(0.21) benign(0.007) TCGA-78-7535-01 12 31144811 31144811 C A TSPAN11 Silent p.T241T 0.48 TCGA-78-7535-01 12 5685081 5685081 A T ANO2 Missense_Mutation p.L847H 0.65 deleterious(0) probably_damaging(1) TCGA-78-7535-01 12 57058275 57058275 T A PTGES3 Silent p.P157P 0.52 TCGA-78-7535-01 13 108863171 108863171 T A LIG4 Missense_Mutation p.N149I 0.69 deleterious(0) probably_damaging(1) TCGA-78-7535-01 13 108863173 108863173 T A LIG4 Silent p.V148V 0.67 TCGA-78-7535-01 13 21199956 21199956 G C IFT88 Missense_Mutation p.V432L 0.68 tolerated(0.33) benign(0.004) TCGA-78-7535-01 13 35751179 35751179 C A NBEA Missense_Mutation p.P1534Q 0.75 tolerated(0.3) possibly_damaging(0.714) TCGA-78-7535-01 14 101488424 101488424 G T MIR379 RNA 0.54 TCGA-78-7535-01 14 101489695 101489695 A T MIR411 RNA 0.68 TCGA-78-7535-01 14 20691969 20691969 G T OR11H6 Missense_Mutation p.G34V 0.57 deleterious(0) probably_damaging(0.972) TCGA-78-7535-01 14 22133543 22133543 G T OR4E2 Nonsense_Mutation p.E83* 0.54 TCGA-78-7535-01 14 28733879 28733879 T G BNIP3P1 RNA 0.62 TCGA-78-7535-01 14 35871154 35871154 T C NFKBIA 3'UTR 0.60 TCGA-78-7535-01 14 53619470 53619470 G A DDHD1 Missense_Mutation p.S116L 0.82 tolerated_low_confidence(0.17) probably_damaging(0.99) TCGA-78-7535-01 14 81609890 81609890 G A TSHR Silent p.T496T 0.65 TCGA-78-7535-01 14 94935754 94935754 G T SERPINA9 Missense_Mutation p.L160M 0.55 deleterious(0.05) probably_damaging(1) TCGA-78-7535-01 14 95108087 95108087 C G SERPINA13P RNA 0.62 TCGA-78-7535-01 14 96792136 96792136 A G ATG2B Missense_Mutation p.S763P 0.55 tolerated(1) benign(0.328) TCGA-78-7535-01 15 27777965 27777965 T C GABRG3 Missense_Mutation p.F448L 0.08 tolerated(0.47) probably_damaging(0.995) TCGA-78-7535-01 15 65782569 65782569 C G DPP8 Missense_Mutation p.D278H 0.54 deleterious(0) probably_damaging(1) TCGA-78-7535-01 15 72637923 72637923 C T HEXA Intron 0.59 TCGA-78-7535-01 15 79749274 79749274 A C KIAA1024 Missense_Mutation p.E262A 0.16 tolerated(0.05) benign(0.242) TCGA-78-7535-01 16 1129350 1129350 C A SSTR5 Missense_Mutation p.A161D 0.22 tolerated(0.07) probably_damaging(1) TCGA-78-7535-01 16 15815294 15815294 A G MYH11 Silent p.D1528D 0.33 TCGA-78-7535-01 16 18437725 18437725 C A RP11-1212A22.1 RNA 0.17 TCGA-78-7535-01 16 2161139 2161139 C A PKD1 Silent p.P1343P 0.34 TCGA-78-7535-01 16 31885198 31885198 C G ZNF267 5'UTR 0.31 TCGA-78-7535-01 16 48295479 48295479 T C LONP2 Missense_Mutation p.C290R 0.66 deleterious(0.01) benign(0.372) TCGA-78-7535-01 16 69726354 69726354 G C NFAT5 Missense_Mutation p.D876H 0.59 possibly_damaging(0.681) TCGA-78-7535-01 16 87678279 87678279 G T JPH3 Silent p.L266L 0.07 TCGA-78-7535-01 17 10443940 10443940 C A MYH2 Missense_Mutation p.D327Y 0.62 deleterious(0) probably_damaging(0.978) TCGA-78-7535-01 17 17696953 17696954 - A RAI1 Frame_Shift_Ins p.A233Gfs*5 0.19 TCGA-78-7535-01 17 29490318 29490321 CGGA - NF1 Frame_Shift_Del p.R135Ifs*29 0.47 TCGA-78-7535-01 17 33679953 33679953 A C SLFN11 Missense_Mutation p.L710V 0.15 tolerated(0.48) benign(0.022) TCGA-78-7535-01 17 61611300 61611300 C T KCNH6 Silent p.R243R 0.56 TCGA-78-7535-01 17 7578275 7578275 G A TP53 Nonsense_Mutation p.Q192* 0.51 TCGA-78-7535-01 18 21481106 21481106 G A LAMA3 Missense_Mutation p.R2007K 0.30 benign(0.003) TCGA-78-7535-01 18 30554619 30554619 G T CCDC178 Missense_Mutation p.H805Q 0.48 tolerated(0.25) benign(0.075) TCGA-78-7535-01 18 47462712 47462712 G C MYO5B Missense_Mutation p.T638S 0.12 tolerated(0.59) benign(0.011) TCGA-78-7535-01 18 56202748 56202748 C T ALPK2 Silent p.T1557T 0.62 TCGA-78-7535-01 18 7002306 7002306 T A LAMA1 Missense_Mutation p.S1447C 0.15 deleterious(0) possibly_damaging(0.838) TCGA-78-7535-01 18 70423324 70423324 C G NETO1 Missense_Mutation p.L309F 0.43 deleterious(0) probably_damaging(0.96) TCGA-78-7535-01 19 1221211 1221211 G T STK11 Splice_Site p.X245_splice 0.48 TCGA-78-7535-01 19 17170437 17170437 G T HAUS8 Missense_Mutation p.P117Q 0.45 deleterious(0) probably_damaging(0.989) TCGA-78-7535-01 19 34180165 34180165 C A CHST8 5'UTR 0.57 TCGA-78-7535-01 19 41248552 41248552 G A C19orf54 Missense_Mutation p.S281F 0.48 tolerated(0.18) benign(0.013) TCGA-78-7535-01 19 43233396 43233396 T G PSG3 Silent p.L374L 0.53 TCGA-78-7535-01 19 43244532 43244532 C A PSG3 Missense_Mutation p.G2V 0.53 tolerated(0.08) probably_damaging(0.935) TCGA-78-7535-01 19 9085453 9085453 A C MUC16 Missense_Mutation p.L2121W 0.59 unknown(0) TCGA-78-7535-01 1 152329873 152329873 C T FLG2 Missense_Mutation p.R130K 0.31 unknown(0) TCGA-78-7535-01 1 152552080 152552080 C - LCE3D 3'UTR 0.35 TCGA-78-7535-01 1 152671522 152671522 G T LCE2A Missense_Mutation p.G49W 0.26 deleterious_low_confidence(0.01) unknown(0) TCGA-78-7535-01 1 156169858 156169858 T C SLC25A44 Missense_Mutation p.Y74H 0.32 deleterious(0) probably_damaging(1) TCGA-78-7535-01 1 156244463 156244463 C A SMG5 Missense_Mutation p.V157L 0.33 tolerated(0.27) benign(0.127) TCGA-78-7535-01 1 156552098 156552098 A T TTC24 Missense_Mutation p.Q261L 0.40 tolerated(0.14) possibly_damaging(0.489) TCGA-78-7535-01 1 158747268 158747268 G A OR6N2 Missense_Mutation p.A53V 0.35 tolerated(0.66) benign(0.001) TCGA-78-7535-01 1 160141399 160141399 G T ATP1A4 Missense_Mutation p.S569I 0.35 deleterious(0.05) benign(0.257) TCGA-78-7535-01 1 161595976 161595976 T G FCGR3B Missense_Mutation p.K215T 0.06 tolerated(0.92) benign(0.433) TCGA-78-7535-01 1 163315595 163315595 G T NUF2 Missense_Mutation p.S312I 0.20 deleterious(0.04) benign(0.043) TCGA-78-7535-01 1 166890569 166890569 G T ILDR2 Missense_Mutation p.T420K 0.39 tolerated(0.93) benign(0.002) TCGA-78-7535-01 1 167097764 167097764 G T DUSP27 Missense_Mutation p.M1132I 0.35 deleterious(0.01) benign(0.231) TCGA-78-7535-01 1 175355377 175355377 T A TNR Missense_Mutation p.E523V 0.31 deleterious(0.02) probably_damaging(0.923) TCGA-78-7535-01 1 175375666 175375666 G A TNR Missense_Mutation p.P62L 0.33 deleterious(0) possibly_damaging(0.883) TCGA-78-7535-01 1 176709187 176709187 C T PAPPA2 Missense_Mutation p.H1336Y 0.43 tolerated(1) benign(0.001) TCGA-78-7535-01 1 176863906 176863906 G A ASTN1 Missense_Mutation p.P911L 0.35 deleterious(0.03) possibly_damaging(0.598) TCGA-78-7535-01 1 177226442 177226442 G C BRINP2 Silent p.L197L 0.20 TCGA-78-7535-01 1 177226443 177226443 G T BRINP2 Missense_Mutation p.A198S 0.21 deleterious(0) probably_damaging(0.991) TCGA-78-7535-01 1 19181198 19181198 G A TAS1R2 Missense_Mutation p.R256C 0.16 deleterious(0) probably_damaging(0.969) TCGA-78-7535-01 1 197141290 197141290 C G ZBTB41 Missense_Mutation p.G692R 0.70 deleterious(0) probably_damaging(0.996) TCGA-78-7535-01 1 209782371 209782371 T C CAMK1G Missense_Mutation p.F228L 0.37 deleterious(0.01) possibly_damaging(0.7) TCGA-78-7535-01 1 22456296 22456296 C G WNT4 Silent p.T42T 0.31 TCGA-78-7535-01 1 229567738 229567738 C A ACTA1 Intron 0.29 TCGA-78-7535-01 1 230472975 230472975 C A PGBD5 Missense_Mutation p.K249N 0.36 deleterious(0.04) probably_damaging(0.953) TCGA-78-7535-01 1 236719125 236719125 A C HEATR1 Missense_Mutation p.F1877V 0.09 deleterious(0) possibly_damaging(0.61) TCGA-78-7535-01 1 24112859 24112859 C T PITHD1 Silent p.F160F 0.28 TCGA-78-7535-01 1 247902414 247902414 T G OR14K1 Missense_Mutation p.F166L 0.15 deleterious(0.02) possibly_damaging(0.864) TCGA-78-7535-01 1 248343812 248343812 C A OR2M2 Silent p.A175A 0.38 TCGA-78-7535-01 1 248458515 248458515 C A OR2T12 Silent p.A122A 0.22 TCGA-78-7535-01 1 248487522 248487522 C A OR2M7 Missense_Mutation p.V117F 0.38 tolerated(0.17) possibly_damaging(0.563) TCGA-78-7535-01 1 248487523 248487523 A G OR2M7 Silent p.A116A 0.38 TCGA-78-7535-01 1 2939246 2939246 G T ACTRT2 Silent p.T332T 0.39 TCGA-78-7535-01 1 33237139 33237139 T - KIAA1522 Frame_Shift_Del p.F787Sfs*88 0.28 TCGA-78-7535-01 1 46726628 46726628 G C RAD54L Missense_Mutation p.G236A 0.26 tolerated(0.1) possibly_damaging(0.515) TCGA-78-7535-01 1 57480898 57480898 G T DAB1 Missense_Mutation p.P368T 0.31 deleterious(0.04) probably_damaging(1) TCGA-78-7535-01 1 64671320 64671320 A G UBE2U Splice_Site p.X23_splice 0.35 TCGA-78-7535-01 20 42788302 42788302 G T JPH2 Silent p.R375R 0.31 TCGA-78-7535-01 20 44640804 44640804 G T MMP9 Silent p.S342S 0.31 TCGA-78-7535-01 20 47265961 47265961 T A PREX1 Missense_Mutation p.D1061V 0.31 deleterious(0) benign(0.097) TCGA-78-7535-01 21 31874246 31874246 A G KRTAP19-5 Missense_Mutation p.Y55H 0.26 tolerated_low_confidence(0.28) unknown(0) TCGA-78-7535-01 21 34132126 34132126 G A PAXBP1 Silent p.P385P 0.36 TCGA-78-7535-01 21 35821633 35821633 C A KCNE1 Silent p.L100L 0.34 TCGA-78-7535-01 21 46596226 46596226 G T ADARB1 Missense_Mutation p.G204W 0.31 tolerated(0.1) probably_damaging(1) TCGA-78-7535-01 21 47535957 47535957 C G COL6A2 Missense_Mutation p.P297R 0.40 deleterious(0.02) possibly_damaging(0.692) TCGA-78-7535-01 22 43930600 43930600 G C EFCAB6 Missense_Mutation p.H1401D 0.33 deleterious(0) benign(0.013) TCGA-78-7535-01 2 100623170 100623170 C A AFF3 Missense_Mutation p.G291V 0.48 deleterious(0.01) probably_damaging(1) TCGA-78-7535-01 2 103061734 103061734 G T IL18RAP Missense_Mutation p.V336F 0.32 deleterious(0.01) possibly_damaging(0.61) TCGA-78-7535-01 2 114002029 114002029 C A PAX8 Missense_Mutation p.V122L 0.21 deleterious(0.02) possibly_damaging(0.869) TCGA-78-7535-01 2 121726411 121726411 G T GLI2 Silent p.S255S 0.29 TCGA-78-7535-01 2 128324229 128324229 C T MYO7B Silent p.G99G 0.21 TCGA-78-7535-01 2 130877719 130877719 C T POTEF Missense_Mutation p.D124N 0.43 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-78-7535-01 2 131356257 131356257 C A CFC1 Missense_Mutation p.G69W 0.16 deleterious(0.01) possibly_damaging(0.841) TCGA-78-7535-01 2 131520357 131520357 G T AMER3 Missense_Mutation p.V238L 0.43 deleterious(0) probably_damaging(0.957) TCGA-78-7535-01 2 16736390 16736390 T G FAM49A Missense_Mutation p.K285N 0.20 tolerated(0.05) possibly_damaging(0.905) TCGA-78-7535-01 2 168105645 168105645 A G XIRP2 Silent p.T2581T 0.35 TCGA-78-7535-01 2 176964707 176964707 C A HOXD12 Missense_Mutation p.P60T 0.36 deleterious(0.02) benign(0.309) TCGA-78-7535-01 2 176964708 176964708 C A HOXD12 Missense_Mutation p.P60H 0.35 deleterious(0) possibly_damaging(0.855) TCGA-78-7535-01 2 187627205 187627205 T A FAM171B Missense_Mutation p.N712K 0.26 deleterious(0) probably_damaging(1) TCGA-78-7535-01 2 191934452 191934452 A T STAT4 Missense_Mutation p.F171I 0.21 deleterious(0) possibly_damaging(0.643) TCGA-78-7535-01 2 196750928 196750928 A G DNAH7 Silent p.D1825D 0.24 TCGA-78-7535-01 2 197657796 197657796 C T GTF3C3 Missense_Mutation p.E99K 0.40 tolerated_low_confidence(0.27) benign(0.055) TCGA-78-7535-01 2 200137136 200137136 C A SATB2 Missense_Mutation p.R667L 0.23 deleterious(0) probably_damaging(0.996) TCGA-78-7535-01 2 203846375 203846375 C T CARF Silent p.S552S 0.31 TCGA-78-7535-01 2 217724654 217724654 T A TNP1 Missense_Mutation p.K35M 0.26 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-78-7535-01 2 220087499 220087499 C T ATG9A Silent p.E572E 0.28 TCGA-78-7535-01 2 234545158 234545158 G A UGT1A10 5'UTR 0.32 TCGA-78-7535-01 2 26204592 26204592 A G KIF3C Silent p.D65D 0.36 TCGA-78-7535-01 2 38809125 38809125 T A HNRNPLL Silent p.P239P 0.29 TCGA-78-7535-01 2 54571011 54571011 G T C2orf73 Splice_Site p.X130_splice 0.28 TCGA-78-7535-01 2 55523591 55523591 G T CCDC88A Missense_Mutation p.H1631N 0.41 tolerated(0.52) benign(0.003) TCGA-78-7535-01 2 71894573 71894573 G T DYSF Missense_Mutation p.Q1795H 0.45 tolerated(0.06) benign(0.003) TCGA-78-7535-01 2 76975798 76975798 C A LRRTM4 3'UTR 0.25 TCGA-78-7535-01 2 96993360 96993360 G C ITPRIPL1 Missense_Mutation p.A339P 0.35 tolerated(0.27) probably_damaging(0.999) TCGA-78-7535-01 3 191047436 191047436 A G CCDC50 5'UTR 1.00 TCGA-78-7535-01 3 3111863 3111863 G A IL5RA 3'UTR 0.55 TCGA-78-7535-01 3 38888059 38888059 G T SCN11A 3'UTR 0.50 TCGA-78-7535-01 4 115760697 115760697 C A NDST4 Missense_Mutation p.R708L 0.58 deleterious(0) probably_damaging(0.982) TCGA-78-7535-01 4 20570575 20570575 A T SLIT2 Silent p.T1012T 0.41 TCGA-78-7535-01 4 26483656 26483656 C A CCKAR Silent p.R297R 0.34 TCGA-78-7535-01 4 3521828 3521828 C A LRPAP1 Missense_Mutation p.D148Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-78-7535-01 4 48555252 48555252 T C FRYL Missense_Mutation p.K1472R 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-78-7535-01 5 110819995 110819995 C A CAMK4 Missense_Mutation p.P418H 0.65 deleterious_low_confidence(0) possibly_damaging(0.579) TCGA-78-7535-01 5 140552500 140552500 C A PCDHB7 Silent p.A28A 0.58 TCGA-78-7535-01 5 140579566 140579566 G T PCDHB11 Missense_Mutation p.Q73H 0.66 tolerated_low_confidence(0.08) benign(0.017) TCGA-78-7535-01 5 167995679 167995679 G C PANK3 Missense_Mutation p.A118G 0.53 deleterious(0.01) possibly_damaging(0.701) TCGA-78-7535-01 5 170667972 170667972 G T RANBP17 Missense_Mutation p.Q821H 0.54 deleterious(0.01) benign(0.305) TCGA-78-7535-01 5 172755169 172755169 T C STC2 Missense_Mutation p.M10V 0.59 tolerated(1) benign(0) TCGA-78-7535-01 5 176825246 176825246 C A SLC34A1 Missense_Mutation p.R627S 0.76 tolerated_low_confidence(0.17) benign(0.002) TCGA-78-7535-01 5 24511448 24511448 G C CDH10 Missense_Mutation p.I330M 0.27 deleterious(0.01) benign(0.3) TCGA-78-7535-01 5 35066004 35066004 C - PRLR Frame_Shift_Del p.S353Afs*45 0.33 TCGA-78-7535-01 5 36686452 36686452 G T SLC1A3 3'UTR 0.18 TCGA-78-7535-01 5 39377150 39377150 G A DAB2 Missense_Mutation p.A580V 0.42 tolerated(0.28) benign(0.001) TCGA-78-7535-01 5 39383033 39383033 A G DAB2 Missense_Mutation p.F343S 0.05 deleterious(0) probably_damaging(0.99) TCGA-78-7535-01 5 45303793 45303793 C A HCN1 Missense_Mutation p.G509V 0.34 deleterious(0) probably_damaging(1) TCGA-78-7535-01 5 5191905 5191905 T G ADAMTS16 Splice_Site p.X438_splice 0.37 TCGA-78-7535-01 5 6753049 6753049 G T PAPD7 Missense_Mutation p.V445L 0.36 tolerated_low_confidence(0.54) benign(0) TCGA-78-7535-01 5 83259126 83259126 T G EDIL3 Missense_Mutation p.K397N 0.22 deleterious(0) probably_damaging(0.999) TCGA-78-7535-01 6 132189226 132189226 C A ENPP1 Missense_Mutation p.N411K 0.54 tolerated(0.3) benign(0.021) TCGA-78-7535-01 6 29976906 29976906 C T ZNRD1-AS1 RNA 0.43 TCGA-78-7535-01 6 3850329 3850329 A G FAM50B Missense_Mutation p.E95G 0.75 tolerated(0.15) benign(0.009) TCGA-78-7535-01 6 56989619 56989619 G A ZNF451 Missense_Mutation p.E92K 0.29 deleterious(0) probably_damaging(0.993) TCGA-78-7535-01 6 56989634 56989634 G T ZNF451 Nonsense_Mutation p.E97* 0.29 TCGA-78-7535-01 7 100681471 100681471 T G MUC17 Silent p.T2258T 0.15 TCGA-78-7535-01 7 100839371 100839371 G T MOGAT3 Silent p.P294P 0.50 TCGA-78-7535-01 7 107542810 107542810 G T DLD Missense_Mutation p.C80F 0.22 deleterious(0) probably_damaging(0.993) TCGA-78-7535-01 7 107808783 107808783 G A NRCAM Silent p.I1084I 0.41 TCGA-78-7535-01 7 117432175 117432175 G C CTTNBP2 Missense_Mutation p.Q359E 0.22 tolerated(0.11) benign(0.15) TCGA-78-7535-01 7 129948207 129948207 C A CPA4 Missense_Mutation p.P255T 0.40 deleterious(0.01) probably_damaging(0.984) TCGA-78-7535-01 7 131895838 131895838 G A PLXNA4 Missense_Mutation p.T721M 0.67 deleterious(0) probably_damaging(0.977) TCGA-78-7535-01 7 132069885 132069885 C T PLXNA4 Intron 0.31 TCGA-78-7535-01 7 141490255 141490255 T A TAS2R5 Missense_Mutation p.F32I 0.47 tolerated(0.34) benign(0.133) TCGA-78-7535-01 7 141619370 141619370 C T OR9A4 Missense_Mutation p.S232F 0.15 deleterious(0) probably_damaging(0.966) TCGA-78-7535-01 7 143792488 143792488 C T OR2A12 Silent p.C96C 0.17 TCGA-78-7535-01 7 144098578 144098578 G T NOBOX Nonsense_Mutation p.C135* 0.41 TCGA-78-7535-01 7 150069074 150069074 G A REPIN1 Silent p.K305K 0.47 TCGA-78-7535-01 7 150417443 150417443 G A GIMAP1 Silent p.L117L 0.44 TCGA-78-7535-01 7 154564630 154564630 C A DPP6 Missense_Mutation p.P372T 0.20 deleterious(0) probably_damaging(0.943) TCGA-78-7535-01 7 27213851 27213851 G T HOXA10 Silent p.A25A 0.48 TCGA-78-7535-01 7 6080534 6080534 C A EIF2AK1 Missense_Mutation p.G370C 0.23 deleterious(0.04) probably_damaging(0.964) TCGA-78-7535-01 7 63721249 63721249 G A ZNF679 Silent p.L68L 0.17 TCGA-78-7535-01 7 65705740 65705740 C T TPST1 Silent p.L110L 0.15 TCGA-78-7535-01 7 73944212 73944212 G A GTF2IRD1 Silent p.L445L 0.34 TCGA-78-7535-01 7 88964140 88964140 A T ZNF804B Missense_Mutation p.K615M 0.21 deleterious(0) possibly_damaging(0.547) TCGA-78-7535-01 8 113569034 113569034 C A CSMD3 Missense_Mutation p.G1398W 0.32 deleterious(0) probably_damaging(1) TCGA-78-7535-01 8 116599310 116599310 C A TRPS1 Missense_Mutation p.G873V 0.36 deleterious_low_confidence(0) benign(0.35) TCGA-78-7535-01 8 143994294 143994294 G C CYP11B2 Missense_Mutation p.P377A 0.39 deleterious(0) possibly_damaging(0.651) TCGA-78-7535-01 8 144696379 144696379 C A TSTA3 Silent p.T206T 0.26 TCGA-78-7535-01 8 145557006 145557006 C T SCRT1 Silent p.Q296Q 0.36 TCGA-78-7535-01 8 145659566 145659566 G A TONSL Missense_Mutation p.P1061L 0.41 deleterious(0) probably_damaging(0.999) TCGA-78-7535-01 8 21608281 21608281 G T GFRA2 Missense_Mutation p.R205S 0.43 deleterious(0) probably_damaging(0.954) TCGA-78-7535-01 8 49832880 49832880 G T SNAI2 Missense_Mutation p.A67D 0.30 tolerated(0.52) benign(0.01) TCGA-78-7535-01 8 67012241 67012241 C G DNAJC5B Missense_Mutation p.S192C 0.24 tolerated_low_confidence(0.17) benign(0.246) TCGA-78-7535-01 8 67012245 67012245 A G DNAJC5B Silent p.R193R 0.22 TCGA-78-7535-01 8 77619930 77619930 T A ZFHX4 Missense_Mutation p.S914T 0.33 benign(0.294) TCGA-78-7535-01 8 92261960 92261960 G T SLC26A7 Missense_Mutation p.W27C 0.29 deleterious(0) probably_damaging(0.999) TCGA-78-7535-01 9 110248154 110248154 A C KLF4 Missense_Mutation p.S440A 0.16 deleterious(0) possibly_damaging(0.817) TCGA-78-7535-01 9 119188208 119188208 G T ASTN2 Silent p.L1263L 0.30 TCGA-78-7535-01 9 125288754 125288754 A T OR1N1 Silent p.A273A 0.28 TCGA-78-7535-01 9 130285969 130285969 T C FAM129B Missense_Mutation p.H193R 0.18 deleterious(0.03) probably_damaging(0.994) TCGA-78-7535-01 9 131708329 131708329 G A DOLK Silent p.P418P 0.20 TCGA-78-7535-01 9 37740869 37740869 G T FRMPD1 Missense_Mutation p.G782C 0.56 deleterious(0) possibly_damaging(0.502) TCGA-78-7535-01 9 43818090 43818090 G A CNTNAP3B Missense_Mutation p.R326H 0.19 tolerated(0.42) benign(0.013) TCGA-78-7535-01 9 77339393 77339393 A C TRPM6 3'UTR 0.43 TCGA-78-7535-01 X 101858809 101858809 A G ARMCX5 3'UTR 0.74 TCGA-78-7535-01 X 107930878 107930878 T A COL4A5 Silent p.S1494S 0.23 TCGA-78-7535-01 X 119500506 119500506 G A ATP1B4 Missense_Mutation p.E64K 0.85 tolerated(0.22) benign(0.032) TCGA-78-7535-01 X 153593558 153593558 A G FLNA Missense_Mutation p.V546A 0.74 tolerated(0.67) benign(0.01) TCGA-78-7535-01 X 2729460 2729460 C G XG Missense_Mutation p.L180V 0.58 tolerated(0.12) benign(0.139) TCGA-78-7535-01 X 37027350 37027350 T C FAM47C Silent p.T289T 0.05 TCGA-78-7535-01 X 50113550 50113550 T A DGKK Splice_Site 0.62 TCGA-78-7535-01 X 90691565 90691565 G A PABPC5 Missense_Mutation p.R330Q 0.67 deleterious(0) probably_damaging(0.979) TCGA-78-7536-01 10 103427688 103427688 T C FBXW4 Missense_Mutation p.Q242R 0.56 tolerated(0.14) benign(0.241) TCGA-78-7536-01 10 115384620 115384620 G A NRAP Silent p.L772L 0.11 TCGA-78-7536-01 10 124593398 124593398 G A CUZD1 Nonsense_Mutation p.Q481* 0.19 TCGA-78-7536-01 10 124740202 124740202 G A PSTK Silent p.A69A 0.33 TCGA-78-7536-01 10 128192828 128192828 G A C10orf90 Missense_Mutation p.P314L 0.54 deleterious(0) probably_damaging(0.918) TCGA-78-7536-01 10 128193239 128193239 G A C10orf90 Missense_Mutation p.P177L 0.25 deleterious(0.01) possibly_damaging(0.826) TCGA-78-7536-01 10 16930475 16930475 A T CUBN Missense_Mutation p.V2949D 0.21 tolerated(0.09) possibly_damaging(0.74) TCGA-78-7536-01 10 17087992 17087992 T C CUBN Missense_Mutation p.K1144R 0.34 tolerated(0.5) benign(0.011) TCGA-78-7536-01 10 18270281 18270281 A G SLC39A12 Missense_Mutation p.Q322R 0.28 tolerated(0.78) benign(0.005) TCGA-78-7536-01 10 27702943 27702943 C A PTCHD3 Silent p.S79S 0.15 TCGA-78-7536-01 10 37430891 37430891 G - ANKRD30A Frame_Shift_Del p.E300Kfs*41 0.15 TCGA-78-7536-01 10 38403763 38403763 G A ZNF37A Silent p.L32L 0.17 TCGA-78-7536-01 10 50835818 50835818 G C CHAT Silent p.T366T 0.33 TCGA-78-7536-01 10 55755279 55755279 C G PCDH15 Intron 0.53 TCGA-78-7536-01 10 61844412 61844412 G A ANK3 Missense_Mutation p.T1341I 0.12 possibly_damaging(0.723) TCGA-78-7536-01 10 7773912 7773912 G T ITIH2 Missense_Mutation p.D534Y 0.25 deleterious(0.04) benign(0.27) TCGA-78-7536-01 10 87373338 87373338 G T GRID1 Silent p.G809G 0.24 TCGA-78-7536-01 10 87628928 87628928 C A GRID1 Missense_Mutation p.D264Y 0.36 deleterious(0) possibly_damaging(0.83) TCGA-78-7536-01 10 95719309 95719309 G C PIPSL RNA 0.22 TCGA-78-7536-01 10 96005999 96005999 C A PLCE1 Missense_Mutation p.A906E 0.32 tolerated(0.47) benign(0.131) TCGA-78-7536-01 10 97078119 97078119 T C SORBS1 Missense_Mutation p.I1257V 0.23 tolerated(0.22) probably_damaging(0.986) TCGA-78-7536-01 10 98154944 98154944 C A TLL2 Nonsense_Mutation p.E576* 0.18 TCGA-78-7536-01 10 98376423 98376423 C A PIK3AP1 Nonsense_Mutation p.E663* 0.39 TCGA-78-7536-01 10 99968119 99968119 G T R3HCC1L Missense_Mutation p.R83I 0.22 deleterious(0) probably_damaging(0.917) TCGA-78-7536-01 11 101776570 101776570 G C ANGPTL5 Missense_Mutation p.Q84E 0.21 deleterious(0.01) possibly_damaging(0.687) TCGA-78-7536-01 11 104897037 104897037 G T CASP1 Missense_Mutation p.T388N 0.14 deleterious(0) probably_damaging(0.931) TCGA-78-7536-01 11 105789637 105789637 T A GRIA4 Missense_Mutation p.V490D 0.14 deleterious(0) probably_damaging(0.997) TCGA-78-7536-01 11 106810228 106810228 A G GUCY1A2 Silent p.I388I 0.22 TCGA-78-7536-01 11 108032615 108032615 G A NPAT Silent p.F1066F 0.12 TCGA-78-7536-01 11 108412428 108412428 C G EXPH5 Missense_Mutation p.M77I 0.27 deleterious(0) probably_damaging(0.986) TCGA-78-7536-01 11 1093613 1093613 C T MUC2 Missense_Mutation p.P1811L 0.57 unknown(0) TCGA-78-7536-01 11 110561301 110561301 C G ARHGAP20 Missense_Mutation p.D53H 0.29 deleterious(0.02) probably_damaging(0.969) TCGA-78-7536-01 11 111156507 111156507 C A C11orf53 Missense_Mutation p.H147N 0.19 tolerated(0.06) possibly_damaging(0.479) TCGA-78-7536-01 11 111709015 111709015 C A ALG9 Silent p.L256L 0.50 TCGA-78-7536-01 11 11292739 11292739 C G GALNT18 Silent p.S592S 0.58 TCGA-78-7536-01 11 113234595 113234595 A C TTC12 Missense_Mutation p.I588L 0.28 tolerated(0.09) benign(0.009) TCGA-78-7536-01 11 113281401 113281401 C A DRD2 3'UTR 0.28 TCGA-78-7536-01 11 113673937 113673937 C A USP28 Silent p.G935G 0.19 TCGA-78-7536-01 11 113673938 113673938 C A USP28 Missense_Mutation p.G935V 0.20 deleterious(0) probably_damaging(1) TCGA-78-7536-01 11 113934619 113934619 C A ZBTB16 Silent p.T199T 0.25 TCGA-78-7536-01 11 114453455 114453455 G A NXPE4 Missense_Mutation p.R129C 0.28 tolerated(0.2) benign(0.025) TCGA-78-7536-01 11 118081387 118081387 G A AMICA1 Missense_Mutation p.P80L 0.58 deleterious(0) possibly_damaging(0.881) TCGA-78-7536-01 11 120198194 120198194 G T TMEM136 Missense_Mutation p.G37V 0.35 tolerated(0.56) benign(0.022) TCGA-78-7536-01 11 120989334 120989334 C T TECTA Silent p.R370R 0.27 TCGA-78-7536-01 11 121038900 121038900 G T TECTA Missense_Mutation p.L1908F 0.28 deleterious(0.02) possibly_damaging(0.862) TCGA-78-7536-01 11 1213528 1213528 G T MUC5AC RNA 0.15 TCGA-78-7536-01 11 121477927 121477927 G T SORL1 Missense_Mutation p.W1698C 0.59 tolerated(0.08) probably_damaging(1) TCGA-78-7536-01 11 123813682 123813682 G A OR6T1 Silent p.F288F 0.22 TCGA-78-7536-01 11 123813927 123813927 A C OR6T1 Missense_Mutation p.L207V 0.26 tolerated(0.14) possibly_damaging(0.557) TCGA-78-7536-01 11 124120485 124120485 A T OR8G1 Silent p.P21P 0.29 TCGA-78-7536-01 11 125315985 125315986 - T FEZ1 3'UTR 0.31 TCGA-78-7536-01 11 126294520 126294520 A C KIRREL3 Silent p.S764S 0.16 TCGA-78-7536-01 11 129306860 129306860 C A BARX2 Silent p.R134R 0.62 TCGA-78-7536-01 11 14990442 14990442 G T CALCA Missense_Mutation p.A110E 0.44 tolerated(0.27) benign(0.272) TCGA-78-7536-01 11 17758089 17758089 C T KCNC1 Silent p.F180F 0.57 TCGA-78-7536-01 11 18231335 18231335 C T RP11-113D6.10 Missense_Mutation p.H41Y 0.33 deleterious(0) probably_damaging(0.996) TCGA-78-7536-01 11 18587914 18587914 T C UEVLD Missense_Mutation p.Y158C 0.66 deleterious(0) probably_damaging(0.999) TCGA-78-7536-01 11 18765577 18765577 G T PTPN5 Nonsense_Mutation p.C89* 0.30 TCGA-78-7536-01 11 20622673 20622673 A T SLC6A5 Splice_Site p.X2_splice 0.27 TCGA-78-7536-01 11 2156610 2156610 G T IGF2 Silent p.R104R 0.59 TCGA-78-7536-01 11 22363101 22363101 G C SLC17A6 Silent p.G38G 0.16 TCGA-78-7536-01 11 26725171 26725171 A T SLC5A12 Missense_Mutation p.V243E 0.20 deleterious(0) probably_damaging(0.95) TCGA-78-7536-01 11 31125268 31125268 T C DCDC1 Silent p.A600A 0.70 TCGA-78-7536-01 11 33565256 33565256 T G KIAA1549L Missense_Mutation p.L419W 0.16 deleterious_low_confidence(0.03) benign(0.041) TCGA-78-7536-01 11 3392868 3392868 G A ZNF195 Silent p.L23L 0.34 TCGA-78-7536-01 11 35456226 35456226 A G PAMR1 Missense_Mutation p.L504P 0.58 deleterious(0) probably_damaging(0.979) TCGA-78-7536-01 11 36484178 36484178 C G PRR5L Missense_Mutation p.H333Q 0.60 tolerated(0.12) benign(0.008) TCGA-78-7536-01 11 44289130 44289130 G T ALX4 Missense_Mutation p.R274S 0.61 deleterious(0.01) probably_damaging(0.972) TCGA-78-7536-01 11 4616129 4616129 C A OR52I1 Silent p.I287I 0.50 TCGA-78-7536-01 11 46898090 46898090 C A LRP4 Missense_Mutation p.G1155W 0.55 deleterious(0) probably_damaging(0.994) TCGA-78-7536-01 11 4825134 4825134 C A OR52R1 Silent p.V159V 0.56 TCGA-78-7536-01 11 55062969 55062969 T A TRIM51HP RNA 0.26 TCGA-78-7536-01 11 55111468 55111468 C T OR4A16 Silent p.P264P 0.26 TCGA-78-7536-01 11 55321937 55321937 T A OR4C15 Nonsense_Mutation p.L52* 0.55 TCGA-78-7536-01 11 55322871 55322871 T A OR4C15 Missense_Mutation p.D363E 0.28 tolerated_low_confidence(0.16) benign(0.003) TCGA-78-7536-01 11 55322888 55322888 A C OR4C15 Missense_Mutation p.K369T 0.28 deleterious_low_confidence(0.01) benign(0.004) TCGA-78-7536-01 11 55371095 55371095 C A OR4C11 Missense_Mutation p.C252F 0.90 deleterious(0) probably_damaging(0.966) TCGA-78-7536-01 11 55607040 55607040 C T OR5D16 Silent p.H271H 0.27 TCGA-78-7536-01 11 55761952 55761952 C A OR5F1 Missense_Mutation p.R50S 0.20 tolerated(0.1) benign(0.093) TCGA-78-7536-01 11 55761953 55761953 C T OR5F1 Missense_Mutation p.R50K 0.20 tolerated(0.5) benign(0.002) TCGA-78-7536-01 11 55926917 55926917 T C OR8K5 Missense_Mutation p.R293G 0.21 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-78-7536-01 11 56431458 56431458 C A OR5AR1 Silent p.T99T 0.42 TCGA-78-7536-01 11 56431459 56431459 C A OR5AR1 Missense_Mutation p.Q100K 0.41 deleterious(0.01) possibly_damaging(0.72) TCGA-78-7536-01 11 59271420 59271420 G T OR4D11 Missense_Mutation p.M124I 0.26 tolerated(0.36) benign(0.001) TCGA-78-7536-01 11 60230578 60230578 T A MS4A1 Missense_Mutation p.L88H 0.25 deleterious(0) probably_damaging(0.983) TCGA-78-7536-01 11 6024341 6024341 A T OR56A4 Missense_Mutation p.I13K 0.45 tolerated_low_confidence(0.11) benign(0.005) TCGA-78-7536-01 11 61135493 61135493 G T TMEM138 Intron 0.52 TCGA-78-7536-01 11 61646289 61646289 C A FADS3 Missense_Mutation p.G185C 0.42 deleterious(0) probably_damaging(1) TCGA-78-7536-01 11 61981256 61981256 G T SCGB2A1 3'UTR 0.19 TCGA-78-7536-01 11 62292378 62292378 C G AHNAK Missense_Mutation p.D3171H 0.54 probably_damaging(0.992) TCGA-78-7536-01 11 6240220 6240220 G A FAM160A2 Silent p.L418L 0.58 TCGA-78-7536-01 11 62766562 62766562 C T SLC22A8 Splice_Site p.X198_splice 0.25 TCGA-78-7536-01 11 63141448 63141448 G A SLC22A9 Silent p.L248L 0.23 TCGA-78-7536-01 11 64359072 64359072 G T SLC22A12 Missense_Mutation p.R15M 0.07 deleterious(0.04) probably_damaging(0.935) TCGA-78-7536-01 11 65111510 65111510 G T DPF2 Nonsense_Mutation p.E203* 0.39 TCGA-78-7536-01 11 66083697 66083697 C A CD248 Missense_Mutation p.G268W 0.54 deleterious(0) probably_damaging(1) TCGA-78-7536-01 11 67120236 67120236 C G POLD4 Missense_Mutation p.Q75H 0.31 tolerated(0.56) benign(0.016) TCGA-78-7536-01 11 6816722 6816722 C A OR6A2 Missense_Mutation p.W73L 0.25 tolerated(0.08) probably_damaging(0.974) TCGA-78-7536-01 11 71259672 71259672 T A KRTAP5-9 5'UTR 0.41 TCGA-78-7536-01 11 7441858 7441858 C A SYT9 Missense_Mutation p.L487M 0.53 deleterious(0.02) probably_damaging(0.924) TCGA-78-7536-01 11 75562951 75562951 C T UVRAG Silent p.N47N 0.22 TCGA-78-7536-01 11 76507537 76507537 C G TSKU Missense_Mutation p.P293A 0.53 tolerated(0.71) benign(0.168) TCGA-78-7536-01 11 78369041 78369041 C A TENM4 3'UTR 0.19 TCGA-78-7536-01 11 7984990 7984990 C A NLRP10 Missense_Mutation p.S18I 0.26 tolerated(0.06) possibly_damaging(0.516) TCGA-78-7536-01 11 82645081 82645081 C A C11orf82 Missense_Mutation p.P901T 0.37 tolerated(0.06) benign(0.11) TCGA-78-7536-01 11 85435727 85435727 T A SYTL2 Missense_Mutation p.L591F 0.59 deleterious(0) benign(0.205) TCGA-78-7536-01 11 89935706 89935706 T A CHORDC1 Missense_Mutation p.K289M 0.55 deleterious(0.02) possibly_damaging(0.519) TCGA-78-7536-01 11 92533544 92533544 C A FAT3 Missense_Mutation p.N2455K 0.50 benign(0.392) TCGA-78-7536-01 11 92533545 92533545 C A FAT3 Missense_Mutation p.H2456N 0.50 possibly_damaging(0.777) TCGA-78-7536-01 11 92577505 92577505 C G FAT3 Missense_Mutation p.P3658A 0.32 benign(0.077) TCGA-78-7536-01 11 92577662 92577662 G T FAT3 Missense_Mutation p.S3710I 0.24 benign(0.025) TCGA-78-7536-01 11 92615986 92615986 T A FAT3 Missense_Mutation p.C4122S 0.29 benign(0.126) TCGA-78-7536-01 11 92715175 92715175 C A MTNR1B Silent p.I262I 0.22 TCGA-78-7536-01 11 94602564 94602564 G T AMOTL1 Missense_Mutation p.G897V 0.75 deleterious(0.01) possibly_damaging(0.516) TCGA-78-7536-01 12 104160124 104160124 C A STAB2 3'UTR 0.20 TCGA-78-7536-01 12 110230574 110230574 T G TRPV4 Silent p.A569A 0.20 TCGA-78-7536-01 12 111748231 111748231 G T CUX2 Nonsense_Mutation p.E549* 0.50 TCGA-78-7536-01 12 112915664 112915664 G T PTPN11 Nonsense_Mutation p.E313* 0.45 TCGA-78-7536-01 12 11338969 11338969 G T TAS2R42 Missense_Mutation p.P192H 0.41 deleterious(0) probably_damaging(1) TCGA-78-7536-01 12 113645859 113645859 A G IQCD Missense_Mutation p.V38A 0.31 tolerated(1) benign(0.058) TCGA-78-7536-01 12 117768862 117768862 T C NOS1 Missense_Mutation p.M5V 0.32 tolerated_low_confidence(0.37) benign(0) TCGA-78-7536-01 12 120295395 120295395 C A CIT Nonsense_Mutation p.E116* 0.25 TCGA-78-7536-01 12 122395035 122395035 T C WDR66 Missense_Mutation p.S531P 0.58 tolerated(0.06) benign(0.001) TCGA-78-7536-01 12 122676103 122676103 G A LRRC43 Missense_Mutation p.V360I 0.32 deleterious(0.03) benign(0.105) TCGA-78-7536-01 12 124428765 124428765 C T CCDC92 Intron 0.22 TCGA-78-7536-01 12 12871130 12871131 - G CDKN1B Frame_Shift_Ins p.A121Gfs*4 0.35 TCGA-78-7536-01 12 130184559 130184559 C A TMEM132D Missense_Mutation p.S255I 0.19 deleterious(0.02) benign(0.085) TCGA-78-7536-01 12 131456050 131456050 A G GPR133 Missense_Mutation p.K79E 0.09 deleterious_low_confidence(0.05) possibly_damaging(0.493) TCGA-78-7536-01 12 133779036 133779036 G T ZNF268 Missense_Mutation p.G255V 0.38 deleterious(0.02) possibly_damaging(0.63) TCGA-78-7536-01 12 15637129 15637129 G T PTPRO Silent p.V99V 0.65 TCGA-78-7536-01 12 18891912 18891912 A T CAPZA3 Missense_Mutation p.Q237L 0.27 deleterious(0.02) probably_damaging(0.989) TCGA-78-7536-01 12 21695501 21695501 G T GYS2 Missense_Mutation p.P525H 0.40 deleterious(0) probably_damaging(1) TCGA-78-7536-01 12 23728774 23728774 T A SOX5 Splice_Site p.X389_splice 0.24 TCGA-78-7536-01 12 2602428 2602428 C T CACNA1C Missense_Mutation p.T330M 0.36 tolerated(0.07) possibly_damaging(0.827) TCGA-78-7536-01 12 2613653 2613653 G T CACNA1C Intron 0.76 TCGA-78-7536-01 12 27235420 27235420 G T C12orf71 5'UTR 0.30 TCGA-78-7536-01 12 29642559 29642559 G C OVCH1 Silent p.A232A 0.50 TCGA-78-7536-01 12 369210 369210 G C SLC6A13 Missense_Mutation p.S3R 0.16 tolerated(0.08) benign(0.046) TCGA-78-7536-01 12 41323651 41323651 G T CNTN1 Missense_Mutation p.D184Y 0.25 deleterious(0) probably_damaging(1) TCGA-78-7536-01 12 43833464 43833464 G T ADAMTS20 Missense_Mutation p.P852T 0.37 tolerated(0.1) possibly_damaging(0.897) TCGA-78-7536-01 12 4736204 4736204 C A AKAP3 Missense_Mutation p.V622F 0.85 tolerated(0.11) benign(0.328) TCGA-78-7536-01 12 4736719 4736719 C - AKAP3 Frame_Shift_Del p.G450Vfs*23 0.51 TCGA-78-7536-01 12 47629611 47629611 G A PCED1B Silent p.E255E 0.33 TCGA-78-7536-01 12 49412580 49412580 C A PRKAG1 5'Flank 0.44 TCGA-78-7536-01 12 49743390 49743390 A G DNAJC22 Silent p.L245L 0.39 TCGA-78-7536-01 12 52159490 52159490 C A SCN8A Silent p.T860T 0.40 TCGA-78-7536-01 12 53070126 53070126 T G KRT1 Missense_Mutation p.N470H 0.14 deleterious(0) probably_damaging(0.981) TCGA-78-7536-01 12 53663153 53663153 G A ESPL1 Missense_Mutation p.V143M 0.36 deleterious(0) possibly_damaging(0.896) TCGA-78-7536-01 12 54928933 54928933 T A NCKAP1L Missense_Mutation p.C970S 0.39 deleterious(0.02) probably_damaging(0.954) TCGA-78-7536-01 12 57573738 57573738 G T LRP1 Missense_Mutation p.G1714W 0.38 probably_damaging(1) TCGA-78-7536-01 12 57966495 57966495 G A KIF5A Missense_Mutation p.G568R 0.35 tolerated(0.16) benign(0.026) TCGA-78-7536-01 12 57970645 57970645 C A KIF5A Missense_Mutation p.T767K 0.39 tolerated(0.38) benign(0.134) TCGA-78-7536-01 12 58124303 58124303 C G AGAP2 Silent p.R801R 0.39 TCGA-78-7536-01 12 64041112 64041112 C G DPY19L2 Missense_Mutation p.G208R 0.48 tolerated(0.06) benign(0.201) TCGA-78-7536-01 12 67688923 67688923 G A CAND1 Missense_Mutation p.D160N 0.10 deleterious(0) probably_damaging(0.999) TCGA-78-7536-01 12 7559354 7559354 G T CD163L1 Nonsense_Mutation p.C287* 0.44 TCGA-78-7536-01 12 80189444 80189444 T C PPP1R12A Missense_Mutation p.T853A 0.49 deleterious(0) probably_damaging(0.989) TCGA-78-7536-01 12 80747218 80747218 G A OTOGL Missense_Mutation p.D1832N 0.31 deleterious(0.04) probably_damaging(0.994) TCGA-78-7536-01 12 81777829 81777829 G T PPFIA2 Missense_Mutation p.N319K 0.37 tolerated(0.05) benign(0.038) TCGA-78-7536-01 13 113728758 113728758 G A MCF2L Missense_Mutation p.V333I 0.15 tolerated(0.08) benign(0.233) TCGA-78-7536-01 13 114154387 114154387 G A TMCO3 Missense_Mutation p.D247N 0.30 deleterious(0) probably_damaging(1) TCGA-78-7536-01 13 115091622 115091622 C T CHAMP1 Missense_Mutation p.R769C 0.55 deleterious(0) probably_damaging(0.999) TCGA-78-7536-01 13 19748237 19748237 C A TUBA3C Silent p.R373R 0.82 TCGA-78-7536-01 13 27256877 27256877 G T WASF3 Missense_Mutation p.A373S 0.81 tolerated(0.48) benign(0.054) TCGA-78-7536-01 13 38213192 38213192 G T TRPC4 Silent p.T737T 0.76 TCGA-78-7536-01 13 39263534 39263534 G T FREM2 Missense_Mutation p.G685W 0.73 deleterious(0) possibly_damaging(0.648) TCGA-78-7536-01 13 58240920 58240920 C A PCDH17 Missense_Mutation p.A917E 0.33 tolerated(0.05) possibly_damaging(0.889) TCGA-78-7536-01 13 60616906 60616906 C A DIAPH3 Nonsense_Mutation p.E182* 0.20 TCGA-78-7536-01 13 79177363 79177363 C A POU4F1 Silent p.R33R 0.40 TCGA-78-7536-01 13 79177376 79177376 G A POU4F1 Missense_Mutation p.S29F 0.50 deleterious_low_confidence(0) possibly_damaging(0.852) TCGA-78-7536-01 14 101452430 101452430 T C SNORD114-25 RNA 0.86 TCGA-78-7536-01 14 101521780 101521780 G T MIR485 RNA 0.13 TCGA-78-7536-01 14 104441747 104441747 A G TDRD9 Missense_Mutation p.I290V 0.05 deleterious(0.02) possibly_damaging(0.781) TCGA-78-7536-01 14 104640563 104640563 G T KIF26A Silent p.S703S 0.67 TCGA-78-7536-01 14 105929519 105929519 A G MTA1 Splice_Site p.X315_splice 0.54 TCGA-78-7536-01 14 106780696 106780696 C A IGHV4-28 Missense_Mutation p.W56C 0.11 deleterious(0) probably_damaging(0.966) TCGA-78-7536-01 14 20528618 20528618 A T OR4L1 Nonsense_Mutation p.K139* 0.16 TCGA-78-7536-01 14 20612807 20612807 C A OR4N5 Missense_Mutation p.H305N 0.66 tolerated(0.14) benign(0.091) TCGA-78-7536-01 14 20692796 20692796 C T OR11H6 Missense_Mutation p.L310F 0.71 tolerated(0.07) probably_damaging(0.984) TCGA-78-7536-01 14 21052362 21052362 G T RNASE11 Nonsense_Mutation p.S91* 0.67 TCGA-78-7536-01 14 21930549 21930549 T G RAB2B Missense_Mutation p.Y168S 0.29 deleterious(0.02) possibly_damaging(0.658) TCGA-78-7536-01 14 23390185 23390185 C A PRMT5 Missense_Mutation p.E614D 0.22 deleterious(0.01) probably_damaging(1) TCGA-78-7536-01 14 25042852 25042852 G T CTSG Silent p.T253T 0.66 TCGA-78-7536-01 14 26917495 26917495 A G NOVA1 Silent p.Y398Y 0.20 TCGA-78-7536-01 14 39790155 39790155 C A CTAGE5 Missense_Mutation p.P528T 0.18 deleterious(0.01) possibly_damaging(0.675) TCGA-78-7536-01 14 45584171 45584171 T A PRPF39 3'UTR 0.26 TCGA-78-7536-01 14 47504236 47504236 G T MDGA2 Silent p.A599A 0.10 TCGA-78-7536-01 14 59113481 59113481 G T DACT1 Missense_Mutation p.A714S 0.84 tolerated(0.72) benign(0.008) TCGA-78-7536-01 14 63671684 63671684 G T RHOJ Missense_Mutation p.G33W 0.71 deleterious(0) probably_damaging(1) TCGA-78-7536-01 14 68222835 68222835 C A ZFYVE26 Missense_Mutation p.G2206C 0.78 deleterious(0) probably_damaging(0.997) TCGA-78-7536-01 14 73719443 73719443 C A PAPLN Silent p.R325R 0.45 TCGA-78-7536-01 14 77844926 77844926 C G SAMD15 Missense_Mutation p.P389A 0.29 tolerated(0.08) possibly_damaging(0.754) TCGA-78-7536-01 14 77941861 77941861 G A ISM2 3'UTR 0.39 TCGA-78-7536-01 14 78140172 78140172 T A ALKBH1 Missense_Mutation p.I385L 0.59 tolerated_low_confidence(0.78) benign(0) TCGA-78-7536-01 14 90650517 90650517 G T KCNK13 Missense_Mutation p.V133F 0.77 tolerated(0.84) benign(0.004) TCGA-78-7536-01 14 92959890 92959890 C A SLC24A4 Missense_Mutation p.A596D 0.80 deleterious(0) possibly_damaging(0.628) TCGA-78-7536-01 14 94053228 94053228 C A UNC79 Nonsense_Mutation p.Y825* 0.76 TCGA-78-7536-01 14 95053813 95053813 C A SERPINA5 Silent p.A38A 0.79 TCGA-78-7536-01 15 23889722 23889722 A T MAGEL2 Missense_Mutation p.D453E 0.52 tolerated(0.11) possibly_damaging(0.698) TCGA-78-7536-01 15 25924502 25924502 T A ATP10A Missense_Mutation p.R1496W 0.52 deleterious_low_confidence(0) benign(0.253) TCGA-78-7536-01 15 29386483 29386483 G T APBA2 Missense_Mutation p.R406S 0.22 tolerated(0.31) benign(0.044) TCGA-78-7536-01 15 40564701 40564701 G T PAK6 Missense_Mutation p.G379C 0.50 tolerated(0.13) benign(0.376) TCGA-78-7536-01 15 45968317 45968317 G T SQRDL Missense_Mutation p.A225S 0.56 tolerated(0.37) possibly_damaging(0.458) TCGA-78-7536-01 15 49255113 49255113 G T SHC4 Silent p.R34R 0.48 TCGA-78-7536-01 15 49284568 49284598 TCCAGCACCTCAGGCGCCTCTGCTTCCTCTT - SECISBP2L Frame_Shift_Del p.E1050Gfs*79 0.37 TCGA-78-7536-01 15 51975582 51975582 G T SCG3 Silent p.L116L 0.09 TCGA-78-7536-01 15 72953671 72953671 C A GOLGA6B Missense_Mutation p.L211M 0.17 deleterious(0) possibly_damaging(0.82) TCGA-78-7536-01 15 75968962 75968962 G T CSPG4 Silent p.L1966L 0.36 TCGA-78-7536-01 15 75979682 75979682 C G CSPG4 Missense_Mutation p.V1242L 0.35 tolerated(0.1) benign(0.011) TCGA-78-7536-01 15 89738464 89738464 G T ABHD2 Missense_Mutation p.R363L 0.22 tolerated(0.25) benign(0.009) TCGA-78-7536-01 16 10721393 10721393 C A TEKT5 3'UTR 0.36 TCGA-78-7536-01 16 1507713 1507713 C A CLCN7 Silent p.G240G 0.20 TCGA-78-7536-01 16 1507714 1507714 C A CLCN7 Missense_Mutation p.G240V 0.20 deleterious(0) probably_damaging(1) TCGA-78-7536-01 16 15853483 15853483 C T MYH11 Missense_Mutation p.G458R 0.24 probably_damaging(0.954) TCGA-78-7536-01 16 16184348 16184348 G T ABCC1 Missense_Mutation p.M849I 0.38 tolerated(0.27) benign(0.022) TCGA-78-7536-01 16 19644488 19644488 C T C16orf62 Silent p.Y632Y 0.33 TCGA-78-7536-01 16 19653745 19653745 G T C16orf62 Silent p.P693P 0.28 TCGA-78-7536-01 16 21623972 21623972 G A METTL9 Missense_Mutation p.V58M 0.27 tolerated(0.11) benign(0.006) TCGA-78-7536-01 16 21716560 21716560 T A OTOA Missense_Mutation p.Y351N 0.38 deleterious(0.01) benign(0.038) TCGA-78-7536-01 16 24231342 24231343 - C PRKCB 3'UTR 0.27 TCGA-78-7536-01 16 2880331 2880331 T A ZG16B Splice_Site p.X27_splice 0.42 TCGA-78-7536-01 16 28947869 28947869 C A CD19 Silent p.P344P 0.16 TCGA-78-7536-01 16 30036935 30036935 G T FAM57B Intron 0.72 TCGA-78-7536-01 16 3304279 3304279 T A MEFV Silent p.L263L 0.37 TCGA-78-7536-01 16 4815625 4815625 C A ZNF500 Nonsense_Mutation p.E119* 0.29 TCGA-78-7536-01 16 51171110 51171110 G C SALL1 Silent p.G1296G 0.26 TCGA-78-7536-01 16 51175948 51175948 T - SALL1 Frame_Shift_Del p.K62Rfs*9 0.19 TCGA-78-7536-01 16 70908286 70908286 G T HYDIN Missense_Mutation p.P3624T 0.19 benign(0) TCGA-78-7536-01 16 71015345 71015345 C A HYDIN Nonsense_Mutation p.G1487* 0.29 TCGA-78-7536-01 16 71571596 71571596 C A CHST4 Missense_Mutation p.P339H 0.30 deleterious(0) probably_damaging(1) TCGA-78-7536-01 16 74516969 74516969 C G GLG1 Missense_Mutation p.C542S 0.44 deleterious(0) probably_damaging(0.978) TCGA-78-7536-01 16 75563627 75563627 A G CHST5 Missense_Mutation p.I219T 0.35 deleterious(0) probably_damaging(0.955) TCGA-78-7536-01 16 7645589 7645589 G T RBFOX1 Silent p.A189A 0.34 TCGA-78-7536-01 16 83999445 83999445 A G OSGIN1 Missense_Mutation p.K423E 0.69 deleterious(0) possibly_damaging(0.706) TCGA-78-7536-01 17 10404699 10404699 C T MYH1 Missense_Mutation p.E1156K 0.80 deleterious(0) possibly_damaging(0.816) TCGA-78-7536-01 17 10406197 10406197 T C MYH1 Missense_Mutation p.D990G 0.32 deleterious(0.02) possibly_damaging(0.818) TCGA-78-7536-01 17 10426870 10426870 C G MYH2 Missense_Mutation p.E1805D 0.71 deleterious(0.03) probably_damaging(0.912) TCGA-78-7536-01 17 10428110 10428110 G A MYH2 Silent p.A1645A 0.36 TCGA-78-7536-01 17 11772571 11772571 G C DNAH9 Splice_Site p.X3351_splice 0.55 TCGA-78-7536-01 17 11837226 11837240 TGGAGAGATCATGTA - DNAH9 In_Frame_Del p.E4111_G4115del 0.28 TCGA-78-7536-01 17 26940477 26940477 C G RP11-192H23.4 Missense_Mutation p.R102T 0.16 tolerated_low_confidence(0.6) benign(0.19) TCGA-78-7536-01 17 29553455 29553455 T C NF1 Silent p.D668D 0.36 TCGA-78-7536-01 17 32597371 32597371 G T CCL7 Missense_Mutation p.G21V 0.32 tolerated(1) benign(0.004) TCGA-78-7536-01 17 35300422 35300422 G T LHX1 Silent p.V405V 0.68 TCGA-78-7536-01 17 36361732 36361732 C A RP11-1407O15.2 Missense_Mutation p.V205F 0.47 TCGA-78-7536-01 17 37070622 37070622 C G LASP1 Missense_Mutation p.S134R 0.67 tolerated(0.14) benign(0.008) TCGA-78-7536-01 17 37813294 37813294 G A STARD3 Missense_Mutation p.E85K 0.57 deleterious(0.01) probably_damaging(0.941) TCGA-78-7536-01 17 38555031 38555031 A C TOP2A Missense_Mutation p.N1149K 0.22 deleterious(0.02) benign(0.003) TCGA-78-7536-01 17 39383101 39383101 C G KRTAP9-2 Silent p.T65T 0.49 TCGA-78-7536-01 17 40838982 40838982 G A CNTNAP1 Missense_Mutation p.R321H 0.63 tolerated(0.52) probably_damaging(0.991) TCGA-78-7536-01 17 43545941 43545941 G C PLEKHM1 Missense_Mutation p.S314R 0.42 tolerated(0.21) benign(0.035) TCGA-78-7536-01 17 51900476 51900476 G T KIF2B Nonsense_Mutation p.E28* 0.80 TCGA-78-7536-01 17 51900892 51900892 G T KIF2B Silent p.L166L 0.68 TCGA-78-7536-01 17 55950055 55950055 C G CUEDC1 Silent p.R251R 0.24 TCGA-78-7536-01 17 58987935 58987935 C G BCAS3 Missense_Mutation p.Q289E 0.25 tolerated(0.49) possibly_damaging(0.449) TCGA-78-7536-01 17 59878764 59878764 C T BRIP1 Silent p.G330G 0.57 TCGA-78-7536-01 17 60072548 60072552 GTCTA ATCTCTC MED13 Frame_Shift_Ins p.D714Efs*16 0.22 TCGA-78-7536-01 17 62750587 62750587 T C hsa-mir-6080 RNA 0.48 TCGA-78-7536-01 17 6364774 6364774 C A PITPNM3 Missense_Mutation p.Q803H 0.79 tolerated(1) benign(0.006) TCGA-78-7536-01 17 66881435 66881435 C A ABCA8 Nonsense_Mutation p.G1111* 0.32 TCGA-78-7536-01 17 74901391 74901391 G T MGAT5B Silent p.G288G 0.76 TCGA-78-7536-01 17 75205438 75205438 G A SEC14L1 Silent p.E497E 0.09 TCGA-78-7536-01 17 7577129 7577129 A C TP53 Missense_Mutation p.F270C 0.62 deleterious(0) probably_damaging(0.998) TCGA-78-7536-01 17 76568965 76568965 A G DNAH17 Silent p.S119S 0.38 TCGA-78-7536-01 17 7689630 7689630 C T DNAH2 Silent p.R2106R 0.30 TCGA-78-7536-01 17 80400499 80400500 TA ATG HEXDC 3'UTR 0.09 TCGA-78-7536-01 18 10672706 10672706 C A PIEZO2 Missense_Mutation p.G2663W 0.21 deleterious(0) possibly_damaging(0.877) TCGA-78-7536-01 18 19154125 19154125 C A ESCO1 Missense_Mutation p.C227F 0.37 tolerated(0.07) benign(0.009) TCGA-78-7536-01 18 21136522 21136522 C A NPC1 Silent p.R337R 0.47 TCGA-78-7536-01 18 21136523 21136523 C A NPC1 Missense_Mutation p.R337L 0.45 tolerated(0.3) benign(0.001) TCGA-78-7536-01 18 22804644 22804644 G T ZNF521 Missense_Mutation p.L1080M 0.30 tolerated(0.06) possibly_damaging(0.453) TCGA-78-7536-01 18 25565085 25565085 C A CDH2 Silent p.L696L 0.41 TCGA-78-7536-01 18 31323231 31323231 C A ASXL3 Missense_Mutation p.P1140Q 0.35 possibly_damaging(0.766) TCGA-78-7536-01 18 44260249 44260249 G T ST8SIA5 Missense_Mutation p.A296D 0.24 probably_damaging(0.998) TCGA-78-7536-01 18 47088600 47088600 C A LIPG 5'UTR 0.43 TCGA-78-7536-01 18 48458657 48458657 A G ME2 Silent p.P448P 0.37 TCGA-78-7536-01 18 50985817 50985817 C A DCC Missense_Mutation p.T1203N 0.45 tolerated(1) benign(0.001) TCGA-78-7536-01 18 60237354 60237354 G C ZCCHC2 Missense_Mutation p.G622A 0.42 tolerated(0.08) probably_damaging(0.999) TCGA-78-7536-01 18 61171097 61171097 A T SERPINB5 3'UTR 0.42 TCGA-78-7536-01 18 63547670 63547670 G T CDH7 Missense_Mutation p.R633L 0.21 deleterious(0.01) possibly_damaging(0.657) TCGA-78-7536-01 18 7044817 7044817 G A LAMA1 Missense_Mutation p.H294Y 0.53 deleterious(0) probably_damaging(0.99) TCGA-78-7536-01 18 72999633 72999633 G T TSHZ1 Silent p.L712L 0.18 TCGA-78-7536-01 19 10504034 10504034 G A CDC37 Silent p.R270R 0.91 TCGA-78-7536-01 19 15073090 15073090 G A SLC1A6 Missense_Mutation p.P220L 0.75 tolerated(0.64) benign(0) TCGA-78-7536-01 19 15794413 15794413 G C CYP4F12 Missense_Mutation p.G253A 0.65 deleterious(0.02) probably_damaging(0.986) TCGA-78-7536-01 19 15918728 15918728 C A OR10H1 Silent p.L40L 0.80 TCGA-78-7536-01 19 16280476 16280476 G T CIB3 Missense_Mutation p.P55T 0.69 deleterious(0.02) probably_damaging(0.998) TCGA-78-7536-01 19 17837847 17837847 A T MAP1S Nonsense_Mutation p.K552* 0.80 TCGA-78-7536-01 19 20044023 20044023 C A ZNF93 Missense_Mutation p.P87T 0.32 deleterious(0.03) possibly_damaging(0.806) TCGA-78-7536-01 19 31040383 31040383 C G ZNF536 Missense_Mutation p.T1286R 0.23 deleterious_low_confidence(0.03) benign(0.312) TCGA-78-7536-01 19 31768676 31768676 G A TSHZ3 Missense_Mutation p.R675W 0.21 deleterious(0.01) benign(0.386) TCGA-78-7536-01 19 33588736 33588736 G A GPATCH1 Missense_Mutation p.V310I 0.28 tolerated(0.23) benign(0.005) TCGA-78-7536-01 19 35719621 35719621 C A FAM187B 5'UTR 0.43 TCGA-78-7536-01 19 35831821 35831821 C T CD22 Silent p.P429P 0.27 TCGA-78-7536-01 19 36216509 36216509 A G KMT2B Missense_Mutation p.K1258E 0.31 possibly_damaging(0.507) TCGA-78-7536-01 19 36334447 36334447 C A NPHS1 Missense_Mutation p.G754V 0.42 deleterious(0) probably_damaging(0.998) TCGA-78-7536-01 19 38127134 38127134 C A ZFP30 Missense_Mutation p.W103L 0.47 tolerated(0.22) probably_damaging(0.986) TCGA-78-7536-01 19 38990296 38990296 C G RYR1 Missense_Mutation p.A2350G 0.14 benign(0.069) TCGA-78-7536-01 19 39062816 39062816 A T RYR1 Missense_Mutation p.E4635V 0.34 unknown(0) TCGA-78-7536-01 19 4047778 4047778 T A ZBTB7A Missense_Mutation p.D576V 0.28 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-78-7536-01 19 41220260 41220260 C A ADCK4 Missense_Mutation p.G49W 0.34 deleterious_low_confidence(0) possibly_damaging(0.599) TCGA-78-7536-01 19 42219636 42219636 C A CEACAM5 Silent p.L257L 0.42 TCGA-78-7536-01 19 4224484 4224484 C A ANKRD24 Silent p.L1141L 0.40 TCGA-78-7536-01 19 44635327 44635327 A T ZNF225 Missense_Mutation p.Y187F 0.37 tolerated(0.23) probably_damaging(0.995) TCGA-78-7536-01 19 46357498 46357498 C A SYMPK Missense_Mutation p.V36L 0.32 deleterious(0.01) probably_damaging(0.984) TCGA-78-7536-01 19 47876150 47876150 G C DHX34 Silent p.T644T 0.43 TCGA-78-7536-01 19 49238578 49238578 C A RASIP1 Missense_Mutation p.G352W 0.50 deleterious(0) probably_damaging(0.972) TCGA-78-7536-01 19 49933857 49933857 G T SLC17A7 Silent p.P534P 0.30 TCGA-78-7536-01 19 50784999 50784999 G T MYH14 Missense_Mutation p.R1480L 0.35 deleterious(0.01) possibly_damaging(0.79) TCGA-78-7536-01 19 51017919 51017919 G T ASPDH 5'Flank 0.25 TCGA-78-7536-01 19 51728367 51728367 C A CD33 5'UTR 0.58 TCGA-78-7536-01 19 53741621 53741621 A T ZNF677 Missense_Mutation p.M120K 0.32 deleterious(0) benign(0.006) TCGA-78-7536-01 19 54206003 54206003 C A MIR518B RNA 0.18 TCGA-78-7536-01 19 54744954 54744954 G T LILRA6 Silent p.A236A 0.16 TCGA-78-7536-01 19 55086271 55086271 G A LILRA2 Silent p.Q142Q 0.43 TCGA-78-7536-01 19 55107261 55107261 C A LILRA1 Silent p.P273P 0.32 TCGA-78-7536-01 19 55501966 55501966 C G NLRP2 Missense_Mutation p.N878K 0.50 deleterious(0) probably_damaging(0.986) TCGA-78-7536-01 19 55898082 55898082 G A RPL28 Intron 0.39 TCGA-78-7536-01 19 5610692 5610692 T G SAFB2 Missense_Mutation p.K385Q 0.48 deleterious(0.02) benign(0.389) TCGA-78-7536-01 19 56424536 56424536 T A NLRP13 Missense_Mutation p.Q216L 0.36 deleterious(0.02) benign(0.119) TCGA-78-7536-01 19 56466135 56466135 C A NLRP8 Silent p.R237R 0.44 TCGA-78-7536-01 19 56467457 56467457 C A NLRP8 Missense_Mutation p.P678H 0.35 tolerated(0.19) benign(0.003) TCGA-78-7536-01 19 57085817 57085817 T C ZNF470 Missense_Mutation p.W39R 0.45 tolerated(0.2) possibly_damaging(0.462) TCGA-78-7536-01 19 57328466 57328466 C A PEG3 Silent p.G448G 0.33 TCGA-78-7536-01 19 57839116 57839116 C G ZNF543 Missense_Mutation p.L96V 0.22 tolerated(0.43) benign(0.065) TCGA-78-7536-01 19 58945522 58945522 G T ZNF132 Missense_Mutation p.P430Q 0.56 deleterious(0) probably_damaging(1) TCGA-78-7536-01 19 8968943 8968943 T A MUC16 Missense_Mutation p.N14358I 0.33 probably_damaging(0.986) TCGA-78-7536-01 19 9226437 9226437 C T OR7G1 Translation_Start_Site p.M1? 0.67 deleterious(0.01) benign(0.009) TCGA-78-7536-01 1 101705298 101705298 C T S1PR1 Missense_Mutation p.A253V 0.56 deleterious(0) probably_damaging(0.949) TCGA-78-7536-01 1 108116723 108116723 C T VAV3 Silent p.K816K 0.36 TCGA-78-7536-01 1 109377570 109377570 A G AKNAD1 Missense_Mutation p.C549R 0.13 tolerated(0.43) benign(0.001) TCGA-78-7536-01 1 109385883 109385883 C T AKNAD1 Missense_Mutation p.E418K 0.49 tolerated(0.14) possibly_damaging(0.511) TCGA-78-7536-01 1 109493041 109493041 G A CLCC1 Missense_Mutation p.L7F 0.39 tolerated(0.05) unknown(0) TCGA-78-7536-01 1 110256088 110256088 G A GSTM5 Intron 0.18 TCGA-78-7536-01 1 111983962 111983962 G A WDR77 Missense_Mutation p.P307S 0.42 tolerated(0.13) possibly_damaging(0.868) TCGA-78-7536-01 1 112281875 112281875 G C FAM212B 5'UTR 0.19 TCGA-78-7536-01 1 112524607 112524607 C G KCND3 Missense_Mutation p.A248P 0.38 deleterious(0) possibly_damaging(0.46) TCGA-78-7536-01 1 114186388 114186388 G T MAGI3 Missense_Mutation p.A664S 0.34 tolerated(0.74) benign(0.008) TCGA-78-7536-01 1 118535194 118535194 G T SPAG17 Silent p.A1752A 0.42 TCGA-78-7536-01 1 119927430 119927430 C A HAO2 Silent p.T105T 0.40 TCGA-78-7536-01 1 152187476 152187476 C G HRNR Missense_Mutation p.S2210T 0.06 unknown(0) TCGA-78-7536-01 1 152278628 152278628 A C FLG Missense_Mutation p.S2912A 0.12 benign(0.277) TCGA-78-7536-01 1 152283392 152283392 C T FLG Missense_Mutation p.D1324N 0.47 possibly_damaging(0.539) TCGA-78-7536-01 1 152384655 152384655 C G CRNN Missense_Mutation p.A19P 0.40 deleterious(0) probably_damaging(0.999) TCGA-78-7536-01 1 154062039 154062039 C A NUP210L Missense_Mutation p.G740V 0.41 deleterious(0.02) probably_damaging(0.931) TCGA-78-7536-01 1 155287752 155287752 G A FDPS Silent p.V167V 0.10 TCGA-78-7536-01 1 157803090 157803090 C A CD5L Missense_Mutation p.D311Y 0.44 deleterious(0) probably_damaging(1) TCGA-78-7536-01 1 158263089 158263089 A C CD1C Missense_Mutation p.H326P 0.22 deleterious(0.02) possibly_damaging(0.61) TCGA-78-7536-01 1 158517333 158517333 G T OR6Y1 Missense_Mutation p.P188Q 0.40 deleterious(0) probably_damaging(1) TCGA-78-7536-01 1 159166886 159166886 C T CADM3 Intron 0.23 TCGA-78-7536-01 1 159505076 159505076 A T OR10J5 Missense_Mutation p.V241D 0.34 deleterious(0) benign(0.197) TCGA-78-7536-01 1 161200727 161200727 G T NR1I3 Intron 0.24 TCGA-78-7536-01 1 162745580 162745580 T C DDR2 Silent p.F665F 0.19 TCGA-78-7536-01 1 165376069 165376069 C G RXRG Missense_Mutation p.K408N 0.48 tolerated(0.07) possibly_damaging(0.59) TCGA-78-7536-01 1 167097711 167097711 G T DUSP27 Nonsense_Mutation p.G1115* 0.47 TCGA-78-7536-01 1 171621301 171621301 C A MYOC Missense_Mutation p.V151F 0.41 tolerated(0.09) benign(0.002) TCGA-78-7536-01 1 172635156 172635156 A C FASLG Nonstop_Mutation p.*282Yext*23 0.18 TCGA-78-7536-01 1 17413136 17413136 C A PADI2 Silent p.V238V 0.55 TCGA-78-7536-01 1 175372638 175372638 G C TNR Missense_Mutation p.P205R 0.36 deleterious(0) probably_damaging(0.998) TCGA-78-7536-01 1 176526293 176526293 C A PAPPA2 Missense_Mutation p.L279M 0.35 tolerated(0.24) benign(0.19) TCGA-78-7536-01 1 181021464 181021464 A G MR1 Missense_Mutation p.Y233C 0.51 deleterious(0.01) possibly_damaging(0.827) TCGA-78-7536-01 1 181724430 181724430 T C CACNA1E Missense_Mutation p.Y1296H 0.20 deleterious(0) benign(0.337) TCGA-78-7536-01 1 183086479 183086479 A C LAMC1 Missense_Mutation p.Q530P 0.48 tolerated(0.23) benign(0.332) TCGA-78-7536-01 1 186295264 186295264 T A TPR Missense_Mutation p.N1998I 0.41 benign(0.019) TCGA-78-7536-01 1 19454761 19454761 C A UBR4 Missense_Mutation p.G3019W 0.70 probably_damaging(0.975) TCGA-78-7536-01 1 19497254 19497254 A T UBR4 Splice_Site p.X1215_splice 0.29 TCGA-78-7536-01 1 197404400 197404400 G T CRB1 Missense_Mutation p.G1136V 0.25 deleterious(0) probably_damaging(1) TCGA-78-7536-01 1 207640047 207640047 G T CR2 Missense_Mutation p.A79S 0.37 tolerated(0.09) benign(0.444) TCGA-78-7536-01 1 216138697 216138697 T A USH2A Missense_Mutation p.H2361L 0.43 benign(0) TCGA-78-7536-01 1 216243576 216243576 C G USH2A Missense_Mutation p.E1972D 0.52 possibly_damaging(0.744) TCGA-78-7536-01 1 216741352 216741352 C A ESRRG Silent p.L231L 0.17 TCGA-78-7536-01 1 228246785 228246785 C A WNT3A Silent p.A226A 0.33 TCGA-78-7536-01 1 228553830 228553830 G A OBSCN Silent p.T7330T 0.35 TCGA-78-7536-01 1 229568170 229568170 G T ACTA1 Missense_Mutation p.L155M 0.53 tolerated_low_confidence(0.44) probably_damaging(0.963) TCGA-78-7536-01 1 232650001 232650001 G A SIPA1L2 Missense_Mutation p.S362F 0.43 deleterious(0) probably_damaging(0.998) TCGA-78-7536-01 1 236925788 236925788 C T ACTN2 Missense_Mutation p.R852W 0.37 deleterious(0) probably_damaging(0.986) TCGA-78-7536-01 1 237754103 237754103 G T RYR2 Missense_Mutation p.G1324V 0.28 benign(0.01) TCGA-78-7536-01 1 237880573 237880573 G T RYR2 Missense_Mutation p.V3467L 0.43 benign(0.225) TCGA-78-7536-01 1 240939349 240939349 G C RGS7 3'UTR 0.31 TCGA-78-7536-01 1 243419346 243419346 C G SDCCAG8 5'Flank 0.64 TCGA-78-7536-01 1 243858929 243858929 C G AKT3 Missense_Mutation p.D46H 0.27 deleterious(0.03) probably_damaging(0.982) TCGA-78-7536-01 1 244849926 244849926 A T DESI2 Missense_Mutation p.I24F 0.28 deleterious(0.01) benign(0.367) TCGA-78-7536-01 1 247920989 247920989 G T OR1C1 Silent p.T240T 0.76 TCGA-78-7536-01 1 248059669 248059669 C A OR2W3 Missense_Mutation p.Q261K 0.27 tolerated(0.05) possibly_damaging(0.619) TCGA-78-7536-01 1 248112502 248112502 G C OR2L8 Missense_Mutation p.A115P 0.54 deleterious(0.01) benign(0.077) TCGA-78-7536-01 1 248262910 248262910 C T OR2L13 Missense_Mutation p.P78L 0.41 deleterious(0.01) possibly_damaging(0.452) TCGA-78-7536-01 1 248366371 248366371 T C OR2M3 Translation_Start_Site p.M1? 0.36 deleterious(0) possibly_damaging(0.77) TCGA-78-7536-01 1 248402768 248402768 G T OR2M4 Missense_Mutation p.D180Y 0.38 deleterious(0) probably_damaging(0.994) TCGA-78-7536-01 1 248458340 248458340 C T OR2T12 Missense_Mutation p.V181M 0.32 tolerated(0.12) benign(0.041) TCGA-78-7536-01 1 248512579 248512579 G T OR14C36 Missense_Mutation p.R168L 0.40 deleterious(0.03) benign(0.339) TCGA-78-7536-01 1 2493144 2493144 G T TNFRSF14 Missense_Mutation p.G195V 0.30 deleterious(0) probably_damaging(0.997) TCGA-78-7536-01 1 25893523 25893523 G T LDLRAP1 3'UTR 0.82 TCGA-78-7536-01 1 28087051 28087051 A T FAM76A Missense_Mutation p.S329C 0.32 deleterious(0.02) possibly_damaging(0.873) TCGA-78-7536-01 1 35227444 35227444 T C GJB4 Missense_Mutation p.C197R 0.66 deleterious(0) probably_damaging(1) TCGA-78-7536-01 1 35916033 35916033 C T KIAA0319L Missense_Mutation p.G714S 0.07 deleterious(0) probably_damaging(1) TCGA-78-7536-01 1 3800320 3800320 G T DFFB 3'UTR 0.34 TCGA-78-7536-01 1 38447413 38447413 G C SF3A3 Missense_Mutation p.A180G 0.75 tolerated(0.47) benign(0.005) TCGA-78-7536-01 1 39888078 39888078 G A MACF1 Silent p.Q3221Q 0.61 TCGA-78-7536-01 1 40713763 40713763 C T TMCO2 Missense_Mutation p.T33I 0.23 deleterious_low_confidence(0) benign(0) TCGA-78-7536-01 1 46120352 46120352 T A GPBP1L1 Missense_Mutation p.T114S 0.67 tolerated(0.29) benign(0.006) TCGA-78-7536-01 1 52698947 52698947 A T ZFYVE9 Missense_Mutation p.E23D 0.73 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-78-7536-01 1 52823548 52823548 G C CC2D1B Missense_Mutation p.P501R 0.81 deleterious(0.01) probably_damaging(0.999) TCGA-78-7536-01 1 57320623 57320623 G T C8A Missense_Mutation p.G17W 0.84 tolerated(0.11) benign(0.022) TCGA-78-7536-01 1 57480922 57480922 G T DAB1 Missense_Mutation p.Q360K 0.31 tolerated(0.29) benign(0.085) TCGA-78-7536-01 1 6269998 6269998 G A RNF207 Silent p.E256E 0.46 TCGA-78-7536-01 1 6511766 6511766 G A ESPN Silent p.G673G 0.29 TCGA-78-7536-01 1 67442278 67442278 G T MIER1 Missense_Mutation p.V368F 0.43 deleterious(0) possibly_damaging(0.866) TCGA-78-7536-01 1 75622645 75622645 C A LHX8 Missense_Mutation p.P293Q 0.15 tolerated(0.08) benign(0.196) TCGA-78-7536-01 1 84961575 84961575 A G RPF1 Missense_Mutation p.K237R 0.37 tolerated(0.5) benign(0.38) TCGA-78-7536-01 1 85648430 85648430 T A SYDE2 Missense_Mutation p.K632I 0.20 deleterious(0) probably_damaging(0.98) TCGA-78-7536-01 1 87041235 87041235 C A CLCA4 Nonsense_Mutation p.S635* 0.48 TCGA-78-7536-01 1 92161253 92161253 A G TGFBR3 Silent p.L805L 0.25 TCGA-78-7536-01 1 92193305 92193305 C G TGFBR3 Missense_Mutation p.V266L 0.30 tolerated(0.59) benign(0.005) TCGA-78-7536-01 1 92193306 92193306 C T TGFBR3 Silent p.V265V 0.30 TCGA-78-7536-01 1 94506797 94506797 T C ABCA4 Missense_Mutation p.K1164E 0.19 tolerated(0.44) possibly_damaging(0.589) TCGA-78-7536-01 1 97700500 97700500 C A DPYD Missense_Mutation p.A784S 0.52 tolerated(0.45) benign(0.03) TCGA-78-7536-01 20 17462628 17462628 G T PCSK2 Missense_Mutation p.K610N 0.15 deleterious(0) probably_damaging(0.997) TCGA-78-7536-01 20 21494229 21494229 A G NKX2-2 Missense_Mutation p.S27P 0.17 deleterious(0.04) benign(0.052) TCGA-78-7536-01 20 23584167 23584167 G T CST9 Missense_Mutation p.P154T 0.28 tolerated_low_confidence(0.1) benign(0.001) TCGA-78-7536-01 20 23586332 23586332 G A CST9 Missense_Mutation p.T57I 0.19 tolerated(0.36) benign(0.241) TCGA-78-7536-01 20 25450719 25450719 A G NINL Silent p.H1087H 0.35 TCGA-78-7536-01 20 30556347 30556347 G T XKR7 Silent p.P123P 0.35 TCGA-78-7536-01 20 31383432 31383457 CATGCCTTCTTCTTTTCTCAATAGAA - DNMT3B Splice_Site p.X418_splice 0.28 TCGA-78-7536-01 20 31671678 31671678 G T BPIFB4 Silent p.T225T 0.36 TCGA-78-7536-01 20 32357916 32357916 T A ZNF341 Nonsense_Mutation p.C473* 0.18 TCGA-78-7536-01 20 34021804 34021804 C A GDF5 Missense_Mutation p.R470L 0.51 deleterious(0) possibly_damaging(0.717) TCGA-78-7536-01 20 39991455 39991455 G A EMILIN3 Silent p.L252L 0.39 TCGA-78-7536-01 20 40714398 40714398 G A PTPRT Silent p.H1314H 0.48 TCGA-78-7536-01 20 42159463 42159463 G T L3MBTL1 Missense_Mutation p.W384C 0.33 deleterious(0.01) probably_damaging(1) TCGA-78-7536-01 20 42331433 42331433 G T MYBL2 Missense_Mutation p.A419S 0.49 tolerated(0.22) benign(0.008) TCGA-78-7536-01 20 44444115 44444115 G T UBE2C Intron 0.53 TCGA-78-7536-01 20 44664148 44664148 G A SLC12A5 Missense_Mutation p.E108K 0.36 tolerated(0.37) benign(0.362) TCGA-78-7536-01 20 44674636 44674636 G A SLC12A5 Splice_Site p.X586_splice 0.31 TCGA-78-7536-01 20 46331302 46331302 C A SULF2 Silent p.R176R 0.31 TCGA-78-7536-01 20 47307504 47307504 G T PREX1 Silent p.R389R 0.46 TCGA-78-7536-01 20 49177900 49177900 G T PTPN1 Missense_Mutation p.D22Y 0.35 deleterious(0.01) possibly_damaging(0.507) TCGA-78-7536-01 20 54579055 54579055 G T CBLN4 Missense_Mutation p.S58Y 0.43 deleterious(0.01) possibly_damaging(0.781) TCGA-78-7536-01 20 58461890 58461890 C T SYCP2 Splice_Site p.X789_splice 0.46 TCGA-78-7536-01 20 58519910 58519910 G T FAM217B Missense_Mutation p.Q304H 0.33 deleterious(0.05) benign(0.211) TCGA-78-7536-01 20 61542745 61542745 C A DIDO1 Missense_Mutation p.V74L 0.47 probably_damaging(0.997) TCGA-78-7536-01 20 61959818 61959818 G A COL20A1 Nonsense_Mutation p.W1250* 0.39 TCGA-78-7536-01 20 744613 744613 C A SLC52A3 Missense_Mutation p.G201V 0.36 tolerated(0.05) benign(0.01) TCGA-78-7536-01 20 9561076 9561076 G A PAK7 Missense_Mutation p.P236S 0.32 tolerated_low_confidence(0.06) benign(0.328) TCGA-78-7536-01 21 22881243 22881243 G C NCAM2 Missense_Mutation p.V717L 0.79 tolerated(0.23) probably_damaging(0.994) TCGA-78-7536-01 21 34721562 34721562 G T IFNAR1 Missense_Mutation p.W318C 0.80 deleterious(0) probably_damaging(0.998) TCGA-78-7536-01 22 16287274 16287274 G T POTEH Missense_Mutation p.N204K 0.19 deleterious(0) probably_damaging(0.999) TCGA-78-7536-01 22 18918567 18918567 C T PRODH Missense_Mutation p.A140T 0.18 tolerated(0.06) benign(0.013) TCGA-78-7536-01 22 22453406 22453406 G A IGLV8-61 Missense_Mutation p.G51D 0.30 deleterious(0.01) probably_damaging(1) TCGA-78-7536-01 22 23237947 23237947 C A IGLL5 3'UTR 0.29 TCGA-78-7536-01 22 26747120 26747120 G T SEZ6L Missense_Mutation p.G837V 0.25 deleterious(0) probably_damaging(0.956) TCGA-78-7536-01 22 28146947 28146947 C T MN1 Missense_Mutation p.D1307N 0.37 probably_damaging(0.995) TCGA-78-7536-01 22 31529925 31529925 C A INPP5J Silent p.A479A 0.44 TCGA-78-7536-01 22 31722807 31722807 T G PATZ1 3'UTR 0.33 TCGA-78-7536-01 22 35806852 35806852 C T MCM5 Nonsense_Mutation p.R290* 0.31 TCGA-78-7536-01 22 39713540 39713540 T A RPL3 Silent p.R97R 0.29 TCGA-78-7536-01 22 42607645 42607645 G C TCF20 Missense_Mutation p.L1223V 0.45 benign(0.103) TCGA-78-7536-01 22 46655173 46655173 A T PKDREJ Missense_Mutation p.D1349E 0.07 tolerated(0.36) benign(0.034) TCGA-78-7536-01 22 50217973 50217973 T C BRD1 5'UTR 0.41 TCGA-78-7536-01 22 51160861 51160861 G T SHANK3 Missense_Mutation p.A1550S 0.57 probably_damaging(0.994) TCGA-78-7536-01 2 102964402 102964402 T G IL1RL1 Intron 0.42 TCGA-78-7536-01 2 103148809 103148809 G T SLC9A4 Nonsense_Mutation p.G687* 0.19 TCGA-78-7536-01 2 108618393 108618393 C T SLC5A7 Missense_Mutation p.A213V 0.24 tolerated(0.28) benign(0.004) TCGA-78-7536-01 2 128522332 128522332 C A WDR33 Intron 0.27 TCGA-78-7536-01 2 130832405 130832405 C A POTEF Silent p.L880L 0.36 TCGA-78-7536-01 2 137988717 137988717 G C THSD7B Missense_Mutation p.E609D 0.36 tolerated(0.55) possibly_damaging(0.801) TCGA-78-7536-01 2 141643783 141643783 G A LRP1B Silent p.H1296H 0.30 TCGA-78-7536-01 2 178990865 178990865 C T RBM45 Missense_Mutation p.P463S 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-78-7536-01 2 179397732 179397732 C T TTN Missense_Mutation p.R34537Q 0.25 TCGA-78-7536-01 2 179463659 179463659 G T TTN Silent p.T18926T 0.23 TCGA-78-7536-01 2 179463660 179463660 G C TTN Missense_Mutation p.T18926S 0.24 TCGA-78-7536-01 2 179579280 179579280 T G TTN Missense_Mutation p.K8741Q 0.56 TCGA-78-7536-01 2 179590619 179590619 T A TTN Silent p.A6810A 0.61 TCGA-78-7536-01 2 179592015 179592015 C A TTN Nonsense_Mutation p.G6693* 0.73 TCGA-78-7536-01 2 179642533 179642533 C G TTN Missense_Mutation p.V1460L 0.23 TCGA-78-7536-01 2 179648463 179648463 G A TTN Missense_Mutation p.P942L 0.24 TCGA-78-7536-01 2 179650358 179650358 G T TTN Missense_Mutation p.H828N 0.22 TCGA-78-7536-01 2 179702023 179702023 T A CCDC141 Missense_Mutation p.K1308M 0.28 tolerated(0.19) benign(0.026) TCGA-78-7536-01 2 182423388 182423388 G T CERKL Missense_Mutation p.A268D 0.17 deleterious(0) probably_damaging(0.965) TCGA-78-7536-01 2 187529932 187529932 A G ITGAV Missense_Mutation p.K718R 0.04 tolerated(0.2) probably_damaging(1) TCGA-78-7536-01 2 189862437 189862437 T A COL3A1 Silent p.G627G 0.73 TCGA-78-7536-01 2 189899873 189899873 A T COL5A2 Nonsense_Mutation p.Y1374* 0.05 TCGA-78-7536-01 2 190428941 190428941 T A SLC40A1 Silent p.P257P 0.64 TCGA-78-7536-01 2 197184519 197184519 C A HECW2 Missense_Mutation p.Q365H 0.23 tolerated_low_confidence(0.19) benign(0.001) TCGA-78-7536-01 2 201363800 201363800 G T KCTD18 Missense_Mutation p.T127K 0.23 tolerated(0.71) benign(0.004) TCGA-78-7536-01 2 204732769 204732769 G A CTLA4 Missense_Mutation p.C35Y 0.13 deleterious(0.05) benign(0.065) TCGA-78-7536-01 2 204735330 204735330 C T CTLA4 Missense_Mutation p.A44V 0.84 tolerated(0.1) benign(0.051) TCGA-78-7536-01 2 207027262 207027262 G T EEF1B2 Missense_Mutation p.W149C 0.57 deleterious(0) benign(0.169) TCGA-78-7536-01 2 207027263 207027263 G T EEF1B2 Missense_Mutation p.D150Y 0.56 deleterious(0) probably_damaging(1) TCGA-78-7536-01 2 207171188 207171188 A G ZDBF2 Missense_Mutation p.I646V 0.13 tolerated(0.12) benign(0.004) TCGA-78-7536-01 2 207603138 207603138 C T MDH1B 3'UTR 0.72 TCGA-78-7536-01 2 208992948 208992948 C A CRYGC Silent p.R168R 0.20 TCGA-78-7536-01 2 210559792 210559792 G T MAP2 Missense_Mutation p.K966N 0.51 deleterious_low_confidence(0) probably_damaging(1) TCGA-78-7536-01 2 210888902 210888902 C A KANSL1L Missense_Mutation p.G863V 0.21 deleterious(0.02) benign(0.206) TCGA-78-7536-01 2 211515147 211515147 G T CPS1 Silent p.A1161A 0.41 TCGA-78-7536-01 2 217148358 217148358 C A MARCH4 Missense_Mutation p.S204I 0.24 deleterious(0) probably_damaging(0.941) TCGA-78-7536-01 2 219736268 219736268 G T WNT6 Silent p.T121T 0.45 TCGA-78-7536-01 2 220087103 220087103 G A ATG9A Nonsense_Mutation p.Q640* 0.59 TCGA-78-7536-01 2 220505593 220505593 C A SLC4A3 Missense_Mutation p.A1204D 0.14 deleterious(0) probably_damaging(0.964) TCGA-78-7536-01 2 224862898 224862898 C A SERPINE2 Missense_Mutation p.V153L 0.17 tolerated(0.37) benign(0.008) TCGA-78-7536-01 2 228681074 228681074 G C CCL20 Missense_Mutation p.W81C 0.26 deleterious(0) probably_damaging(1) TCGA-78-7536-01 2 230253070 230253070 G T DNER Missense_Mutation p.P589H 0.25 deleterious(0) probably_damaging(0.999) TCGA-78-7536-01 2 232393341 232393341 C A NMUR1 Missense_Mutation p.V131F 0.57 deleterious(0.04) benign(0.127) TCGA-78-7536-01 2 234638412 234638412 A T UGT1A3 Missense_Mutation p.M214L 0.30 tolerated(0.73) benign(0.013) TCGA-78-7536-01 2 239237863 239237863 G T TRAF3IP1 Missense_Mutation p.R265S 0.29 deleterious(0.03) possibly_damaging(0.537) TCGA-78-7536-01 2 24005766 24005766 C A ATAD2B Nonsense_Mutation p.E1036* 0.60 TCGA-78-7536-01 2 242343347 242343347 G C FARP2 Missense_Mutation p.W96C 0.31 deleterious(0.05) probably_damaging(1) TCGA-78-7536-01 2 27327173 27327173 G A CGREF1 Missense_Mutation p.P21L 0.36 deleterious(0) probably_damaging(0.996) TCGA-78-7536-01 2 27676886 27676886 C T IFT172 Missense_Mutation p.R1225Q 0.38 deleterious(0.01) possibly_damaging(0.752) TCGA-78-7536-01 2 45522 45522 C T FAM110C Silent p.E288E 0.16 TCGA-78-7536-01 2 45778281 45778281 G A SRBD1 Missense_Mutation p.A553V 0.41 deleterious(0) probably_damaging(0.983) TCGA-78-7536-01 2 45778282 45778282 C T SRBD1 Missense_Mutation p.A553T 0.41 deleterious(0) probably_damaging(0.994) TCGA-78-7536-01 2 54146345 54146345 C A PSME4 Missense_Mutation p.C820F 0.32 deleterious(0) possibly_damaging(0.887) TCGA-78-7536-01 2 58311222 58311222 A T VRK2 Splice_Site p.X46_splice 0.38 TCGA-78-7536-01 2 61571046 61571046 C A USP34 Nonsense_Mutation p.E802* 0.21 TCGA-78-7536-01 2 71892314 71892314 G C DYSF Missense_Mutation p.D1733H 0.27 deleterious(0) probably_damaging(0.96) TCGA-78-7536-01 2 73315800 73315800 C A RAB11FIP5 Missense_Mutation p.A316S 0.53 tolerated(0.22) benign(0.123) TCGA-78-7536-01 2 75881930 75881930 C T MRPL19 Missense_Mutation p.R182W 0.20 deleterious(0) benign(0.347) TCGA-78-7536-01 2 77745606 77745606 C A LRRTM4 Missense_Mutation p.M463I 0.49 tolerated(0.46) benign(0.022) TCGA-78-7536-01 2 79385835 79385835 G T REG3A Missense_Mutation p.A46D 0.50 deleterious(0) possibly_damaging(0.732) TCGA-78-7536-01 2 90249340 90249340 G T IGKV1D-43 Missense_Mutation p.S99I 0.16 deleterious(0.01) benign(0.232) TCGA-78-7536-01 2 95522811 95522811 T C ANKRD20A8P RNA 0.64 TCGA-78-7536-01 3 100374024 100374024 G T GPR128 Missense_Mutation p.W575C 0.82 deleterious(0) probably_damaging(0.995) TCGA-78-7536-01 3 105412398 105412398 T C CBLB Missense_Mutation p.Y665C 0.84 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-78-7536-01 3 10916777 10916777 C A SLC6A11 Silent p.P296P 0.76 TCGA-78-7536-01 3 113325904 113325904 G C SIDT1 Missense_Mutation p.G474A 0.51 deleterious(0) probably_damaging(0.96) TCGA-78-7536-01 3 118937606 118937606 C G B4GALT4 Missense_Mutation p.G230R 0.06 tolerated(0.19) possibly_damaging(0.558) TCGA-78-7536-01 3 120871407 120871407 G T STXBP5L Missense_Mutation p.E251D 0.84 tolerated(0.09) possibly_damaging(0.859) TCGA-78-7536-01 3 130282295 130282295 G A COL6A6 Missense_Mutation p.A150T 0.74 tolerated(0.08) possibly_damaging(0.901) TCGA-78-7536-01 3 131442447 131442447 C G CPNE4 Missense_Mutation p.R68P 0.24 tolerated(0.05) benign(0.02) TCGA-78-7536-01 3 132360964 132360964 C T ACAD11 Missense_Mutation p.R130H 0.25 tolerated(0.09) possibly_damaging(0.485) TCGA-78-7536-01 3 13612322 13612322 C T FBLN2 Missense_Mutation p.P156L 0.80 deleterious(0.02) possibly_damaging(0.598) TCGA-78-7536-01 3 139065733 139065733 C G MRPS22 Missense_Mutation p.S62R 0.93 tolerated(0.11) benign(0.067) TCGA-78-7536-01 3 142272147 142272147 T C ATR Silent p.T909T 0.90 TCGA-78-7536-01 3 150690597 150690597 G A CLRN1 5'Flank 1.00 TCGA-78-7536-01 3 150840728 150840728 A T MED12L Silent p.A121A 0.74 TCGA-78-7536-01 3 15124018 15124018 G A ZFYVE20 Silent p.S232S 0.71 TCGA-78-7536-01 3 156009858 156009858 G T KCNAB1 Intron 0.88 TCGA-78-7536-01 3 169985720 169985720 G T PRKCI Missense_Mutation p.G128C 0.81 deleterious(0) probably_damaging(1) TCGA-78-7536-01 3 172607409 172607409 C A SPATA16 Missense_Mutation p.R554L 0.80 deleterious(0) benign(0.433) TCGA-78-7536-01 3 184106393 184106393 C A CHRD Missense_Mutation p.P858H 0.74 tolerated(0.4) possibly_damaging(0.711) TCGA-78-7536-01 3 185434484 185434484 C T C3orf65 Missense_Mutation p.A106V 0.44 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-78-7536-01 3 186522453 186522453 G C RFC4 Missense_Mutation p.T17S 0.75 tolerated(0.6) benign(0) TCGA-78-7536-01 3 196842896 196842896 C A DLG1 Nonsense_Mutation p.G482* 0.88 TCGA-78-7536-01 3 33194435 33194435 C A SUSD5 Silent p.V563V 0.35 TCGA-78-7536-01 3 35729270 35729270 C - ARPP21 Frame_Shift_Del p.Q101Kfs*47 0.25 TCGA-78-7536-01 3 35778760 35778760 C A ARPP21 Missense_Mutation p.S483Y 0.47 tolerated(0.13) benign(0.269) TCGA-78-7536-01 3 46307665 46307665 C G CCR3 Missense_Mutation p.T360S 0.37 tolerated(0.59) benign(0.03) TCGA-78-7536-01 3 49135913 49135913 C A QARS Missense_Mutation p.G653C 0.74 deleterious(0.05) possibly_damaging(0.908) TCGA-78-7536-01 3 49137018 49137018 T A QARS Missense_Mutation p.Y484F 0.88 deleterious(0.03) possibly_damaging(0.868) TCGA-78-7536-01 3 49149022 49149022 C G USP19 Missense_Mutation p.S1041T 0.87 tolerated(0.19) benign(0.304) TCGA-78-7536-01 3 52428648 52428648 G T DNAH1 Silent p.R3598R 0.90 TCGA-78-7536-01 3 52812520 52812520 C A ITIH1 Silent p.A101A 0.80 TCGA-78-7536-01 3 53925795 53925795 A G SELK Splice_Site p.X7_splice 0.30 TCGA-78-7536-01 3 62384978 62384978 G A CADPS 3'UTR 0.88 TCGA-78-7536-01 3 85961612 85961612 G T CADM2 Nonsense_Mutation p.G200* 0.74 TCGA-78-7536-01 3 95374360 95374360 C A MTHFD2P1 RNA 0.85 TCGA-78-7536-01 3 97744491 97744491 C G GABRR3 RNA 0.64 TCGA-78-7536-01 4 100521876 100521876 C T MTTP Silent p.L408L 0.39 TCGA-78-7536-01 4 104512726 104512726 G T TACR3 Missense_Mutation p.Q335K 0.69 deleterious(0.02) probably_damaging(0.988) TCGA-78-7536-01 4 110883141 110883141 G C EGF Missense_Mutation p.G438R 0.74 deleterious(0.02) probably_damaging(0.995) TCGA-78-7536-01 4 13601180 13601180 T C BOD1L1 Silent p.G2448G 0.34 TCGA-78-7536-01 4 147438231 147438231 C A SLC10A7 Missense_Mutation p.A48S 0.66 tolerated(1) benign(0) TCGA-78-7536-01 4 166986864 166986864 G T TLL1 Missense_Mutation p.W679C 0.70 tolerated(0.06) benign(0.002) TCGA-78-7536-01 4 189012681 189012681 G T TRIML2 Missense_Mutation p.T337N 0.74 deleterious(0) probably_damaging(0.938) TCGA-78-7536-01 4 189068142 189068142 C A TRIML1 Missense_Mutation p.H341Q 0.58 deleterious(0) probably_damaging(0.999) TCGA-78-7536-01 4 36161118 36161118 C A ARAP2 Missense_Mutation p.A818S 0.72 tolerated(0.12) benign(0.028) TCGA-78-7536-01 4 55140718 55140718 G T PDGFRA Missense_Mutation p.V527L 0.81 tolerated(0.07) benign(0.059) TCGA-78-7536-01 4 59439 59439 G T ZNF595 Silent p.L40L 0.07 TCGA-78-7536-01 4 62598529 62598529 C A LPHN3 Missense_Mutation p.S151Y 0.62 deleterious(0) probably_damaging(0.999) TCGA-78-7536-01 4 65165692 65165692 C A TECRL Silent p.L258L 0.41 TCGA-78-7536-01 4 66509116 66509116 C A EPHA5 Missense_Mutation p.G71W 0.71 deleterious(0) probably_damaging(1) TCGA-78-7536-01 4 66509117 66509117 C T EPHA5 Missense_Mutation p.M70I 0.71 tolerated(0.41) benign(0.015) TCGA-78-7536-01 4 77700208 77700208 C T SHROOM3 Missense_Mutation p.P1957S 0.73 deleterious(0) probably_damaging(1) TCGA-78-7536-01 4 86921657 86921657 G A ARHGAP24 Missense_Mutation p.E677K 0.68 tolerated(0.62) benign(0.021) TCGA-78-7536-01 4 90650401 90650401 T A SNCA Missense_Mutation p.I112F 0.80 tolerated(0.71) benign(0.001) TCGA-78-7536-01 5 101774337 101774337 C A SLCO6A1 Silent p.V420V 0.79 TCGA-78-7536-01 5 11023036 11023036 G C CTNND2 Missense_Mutation p.N948K 0.12 tolerated(0.07) benign(0.101) TCGA-78-7536-01 5 110730453 110730453 C G CAMK4 Silent p.A144A 0.40 TCGA-78-7536-01 5 114480312 114480312 C A TRIM36 Missense_Mutation p.A252S 0.68 deleterious(0.03) probably_damaging(0.969) TCGA-78-7536-01 5 127614379 127614379 G T FBN2 Silent p.A2431A 0.69 TCGA-78-7536-01 5 137665288 137665288 C A CDC25C Missense_Mutation p.E81D 0.74 tolerated(0.07) probably_damaging(0.996) TCGA-78-7536-01 5 140167441 140167441 C A PCDHA1 Silent p.P522P 0.79 TCGA-78-7536-01 5 140208979 140208979 C T PCDHA6 Silent p.L435L 0.33 TCGA-78-7536-01 5 140214890 140214890 A G PCDHA7 Missense_Mutation p.M308V 0.16 tolerated_low_confidence(0.1) benign(0) TCGA-78-7536-01 5 140250330 140250330 G T PCDHA11 Missense_Mutation p.V548L 0.70 deleterious_low_confidence(0.04) possibly_damaging(0.666) TCGA-78-7536-01 5 140501789 140501789 A T PCDHB4 Missense_Mutation p.D70V 0.76 deleterious_low_confidence(0.01) possibly_damaging(0.602) TCGA-78-7536-01 5 140794944 140794944 C - PCDHGA10 Frame_Shift_Del p.G735Afs*2 0.50 TCGA-78-7536-01 5 14378120 14378120 G T TRIO Splice_Site p.X1111_splice 0.28 TCGA-78-7536-01 5 145531495 145531495 T C LARS Missense_Mutation p.Q452R 0.84 deleterious(0.01) benign(0.008) TCGA-78-7536-01 5 147593482 147593482 G A SPINK6 Missense_Mutation p.G31S 0.88 tolerated(1) benign(0.011) TCGA-78-7536-01 5 150632802 150632802 C T GM2A Missense_Mutation p.L9F 0.26 tolerated(0.35) unknown(0) TCGA-78-7536-01 5 158250262 158250262 C A EBF1 Missense_Mutation p.V234F 0.69 deleterious(0) probably_damaging(0.945) TCGA-78-7536-01 5 161580279 161580279 C A GABRG2 Missense_Mutation p.R485S 0.80 tolerated(0.32) probably_damaging(0.998) TCGA-78-7536-01 5 163501 163501 G A PLEKHG4B Missense_Mutation p.S749N 0.20 deleterious(0.01) benign(0.013) TCGA-78-7536-01 5 167674028 167674028 A T TENM2 Missense_Mutation p.L2028F 0.23 deleterious(0.02) probably_damaging(0.951) TCGA-78-7536-01 5 168233555 168233555 G C SLIT3 Silent p.S277S 0.71 TCGA-78-7536-01 5 175956382 175956382 C T RNF44 Silent p.V381V 0.66 TCGA-78-7536-01 5 179442350 179442350 C T RNF130 Intron 0.25 TCGA-78-7536-01 5 19571701 19571701 T A CDH18 Missense_Mutation p.N414Y 0.37 deleterious(0) probably_damaging(0.936) TCGA-78-7536-01 5 23526943 23526943 C T PRDM9 Silent p.C582C 0.19 TCGA-78-7536-01 5 26886084 26886084 C A CDH9 Missense_Mutation p.D541Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-78-7536-01 5 33577051 33577051 G C ADAMTS12 Missense_Mutation p.S1027C 0.26 deleterious(0.04) possibly_damaging(0.503) TCGA-78-7536-01 5 33649767 33649767 C A ADAMTS12 Missense_Mutation p.C409F 0.23 deleterious(0) probably_damaging(1) TCGA-78-7536-01 5 34845695 34845695 A T TTC23L Nonsense_Mutation p.K58* 0.21 TCGA-78-7536-01 5 35867563 35867563 T C IL7R Missense_Mutation p.I126T 0.35 deleterious(0) possibly_damaging(0.726) TCGA-78-7536-01 5 37007478 37007478 A T NIPBL Nonsense_Mutation p.R1381* 0.25 TCGA-78-7536-01 5 37815911 37815911 A G GDNF Silent p.L177L 0.27 TCGA-78-7536-01 5 40853641 40853641 C G CARD6 Missense_Mutation p.T736S 0.47 tolerated(0.24) benign(0.017) TCGA-78-7536-01 5 41018863 41018863 G T MROH2B Missense_Mutation p.A868D 0.17 deleterious(0) possibly_damaging(0.688) TCGA-78-7536-01 5 45303797 45303797 C A HCN1 Missense_Mutation p.V508L 0.30 tolerated(0.16) probably_damaging(0.977) TCGA-78-7536-01 5 54649077 54649077 G C SKIV2L2 Missense_Mutation p.D505H 0.83 deleterious(0) probably_damaging(1) TCGA-78-7536-01 5 72383470 72383470 C T FCHO2 Missense_Mutation p.T767M 0.14 deleterious(0.04) benign(0.021) TCGA-78-7536-01 5 9629486 9629486 C G TAS2R1 Missense_Mutation p.R220T 0.23 tolerated(0.59) benign(0.027) TCGA-78-7536-01 6 100838354 100838354 T A SIM1 Missense_Mutation p.R728S 0.46 deleterious_low_confidence(0.01) probably_damaging(0.977) TCGA-78-7536-01 6 110746181 110746181 C T SLC22A16 Silent p.E543E 0.33 TCGA-78-7536-01 6 12163750 12163750 C T HIVEP1 Missense_Mutation p.H2405Y 0.89 deleterious(0.01) possibly_damaging(0.862) TCGA-78-7536-01 6 135263559 135263559 G T ALDH8A1 Missense_Mutation p.P144T 0.49 deleterious(0) probably_damaging(0.999) TCGA-78-7536-01 6 136934306 136934306 T A MAP3K5 Missense_Mutation p.E789D 0.43 tolerated(0.08) benign(0.013) TCGA-78-7536-01 6 142691876 142691876 G A GPR126 Missense_Mutation p.D339N 0.42 deleterious(0.02) probably_damaging(0.92) TCGA-78-7536-01 6 149340274 149340274 G A UST Splice_Site p.X228_splice 0.34 TCGA-78-7536-01 6 152419935 152419935 T A ESR1 Missense_Mutation p.L541Q 0.48 deleterious(0) probably_damaging(0.999) TCGA-78-7536-01 6 155743903 155743903 G T NOX3 Silent p.V411V 0.21 TCGA-78-7536-01 6 155750019 155750019 G T NOX3 Missense_Mutation p.H352N 0.39 deleterious(0.01) probably_damaging(1) TCGA-78-7536-01 6 27806842 27806842 C T HIST1H2BN 3'UTR 0.24 TCGA-78-7536-01 6 31803206 31803206 C T C6orf48 5'UTR 0.75 TCGA-78-7536-01 6 31831479 31831479 G A SLC44A4 Silent p.Y686Y 0.88 TCGA-78-7536-01 6 34730397 34730397 G T SNRPC Missense_Mutation p.S26I 0.12 deleterious(0) possibly_damaging(0.472) TCGA-78-7536-01 6 38810560 38810560 C A DNAH8 Missense_Mutation p.Q1359K 0.77 benign(0.001) TCGA-78-7536-01 6 40399675 40399675 T G LRFN2 Missense_Mutation p.K393T 0.24 tolerated(0.09) possibly_damaging(0.468) TCGA-78-7536-01 6 44344803 44344803 A C SPATS1 3'UTR 0.21 TCGA-78-7536-01 6 69349118 69349118 G C BAI3 Missense_Mutation p.G184A 0.33 tolerated(0.52) probably_damaging(0.981) TCGA-78-7536-01 6 74497058 74497058 G T CD109 Missense_Mutation p.E813D 0.44 deleterious(0.03) benign(0.009) TCGA-78-7536-01 6 87970160 87970160 G T ZNF292 Silent p.S2271S 0.32 TCGA-78-7536-01 6 88344667 88344667 A T ORC3 Silent p.P430P 0.26 TCGA-78-7536-01 6 88854203 88854203 C A CNR1 Missense_Mutation p.C264F 0.27 deleterious(0) probably_damaging(1) TCGA-78-7536-01 6 88854814 88854814 C G CNR1 Missense_Mutation p.E60D 0.50 tolerated_low_confidence(0.37) benign(0.002) TCGA-78-7536-01 6 99790813 99790813 C A FAXC Missense_Mutation p.K121N 0.40 deleterious(0) probably_damaging(1) TCGA-78-7536-01 7 100385716 100385716 C T ZAN Silent p.V2394V 0.91 TCGA-78-7536-01 7 100391834 100391834 G - ZAN Intron 0.50 TCGA-78-7536-01 7 112555399 112555399 T G C7orf60 Missense_Mutation p.K88N 0.88 deleterious(0.04) benign(0.422) TCGA-78-7536-01 7 126086158 126086158 G A GRM8 Intron 0.22 TCGA-78-7536-01 7 127670199 127670199 G T LRRC4 Nonsense_Mutation p.Y165* 0.90 TCGA-78-7536-01 7 131831332 131831332 C T PLXNA4 Silent p.K1664K 0.43 TCGA-78-7536-01 7 134931195 134931195 T A STRA8 Missense_Mutation p.M158K 0.73 deleterious(0) benign(0.415) TCGA-78-7536-01 7 134931196 134931196 G T STRA8 Missense_Mutation p.M158I 0.73 tolerated(0.07) benign(0.154) TCGA-78-7536-01 7 140269479 140269479 C G DENND2A Missense_Mutation p.R502S 0.82 deleterious(0.02) possibly_damaging(0.721) TCGA-78-7536-01 7 141954941 141954941 A T PRSS58 Missense_Mutation p.Y124N 0.90 tolerated(0.23) benign(0.003) TCGA-78-7536-01 7 142569390 142569390 G C TRPV6 3'UTR 0.17 TCGA-78-7536-01 7 142639611 142639611 G A KEL Silent p.Y649Y 0.86 TCGA-78-7536-01 7 143771704 143771704 A G OR2A25 Missense_Mutation p.Y131C 0.87 deleterious(0.01) probably_damaging(0.999) TCGA-78-7536-01 7 149482053 149482053 C T SSPO RNA 0.82 TCGA-78-7536-01 7 149557499 149557499 A G ZNF862 Missense_Mutation p.E417G 0.17 deleterious(0) probably_damaging(0.974) TCGA-78-7536-01 7 150648710 150648710 C G KCNH2 Missense_Mutation p.D591H 0.87 deleterious(0.03) possibly_damaging(0.829) TCGA-78-7536-01 7 151947003 151947003 G A KMT2C Missense_Mutation p.H591Y 0.19 benign(0.055) TCGA-78-7536-01 7 1539894 1539894 C A INTS1 Missense_Mutation p.R153L 0.44 deleterious(0) probably_damaging(0.978) TCGA-78-7536-01 7 15405794 15405794 C T AGMO Silent p.L376L 0.62 TCGA-78-7536-01 7 19184428 19184428 G T FERD3L 3'UTR 0.44 TCGA-78-7536-01 7 20420288 20420288 G T ITGB8 Splice_Site p.X212_splice 0.18 TCGA-78-7536-01 7 34182920 34182920 C G BMPER Silent p.A608A 0.15 TCGA-78-7536-01 7 39611874 39611874 A G YAE1D1 Splice_Site p.X84_splice 0.17 TCGA-78-7536-01 7 43519207 43519207 A G HECW1 Splice_Site p.X1034_splice 0.67 TCGA-78-7536-01 7 43548674 43548674 G A HECW1 Missense_Mutation p.V1325M 0.85 deleterious(0) probably_damaging(0.999) TCGA-78-7536-01 7 4798711 4798711 G T FOXK1 Missense_Mutation p.G425V 0.28 deleterious(0) possibly_damaging(0.841) TCGA-78-7536-01 7 48316083 48316083 C A ABCA13 Missense_Mutation p.L2274I 0.26 benign(0.048) TCGA-78-7536-01 7 51092955 51092955 G A COBL Missense_Mutation p.P1207S 0.23 deleterious(0.01) probably_damaging(0.918) TCGA-78-7536-01 7 53103817 53103817 G T POM121L12 Missense_Mutation p.W151C 0.33 tolerated(0.2) probably_damaging(0.95) TCGA-78-7536-01 7 54610321 54610321 G T VSTM2A 5'UTR 0.59 TCGA-78-7536-01 7 55755564 55755564 A T RNU6-389P 3'Flank 0.24 TCGA-78-7536-01 7 80286010 80286010 C T CD36 Missense_Mutation p.T92M 0.26 deleterious(0) probably_damaging(0.999) TCGA-78-7536-01 7 81388012 81388012 G T HGF Missense_Mutation p.N121K 0.51 tolerated(1) benign(0.186) TCGA-78-7536-01 7 81392114 81392114 G T HGF Missense_Mutation p.P55T 0.32 tolerated(0.56) benign(0.015) TCGA-78-7536-01 7 94044553 94044553 T - COL1A2 Frame_Shift_Del p.F579Lfs*103 0.16 TCGA-78-7536-01 8 103244533 103244533 C T RRM2B Splice_Site p.X17_splice 0.52 TCGA-78-7536-01 8 10465352 10465352 C G RP1L1 Missense_Mutation p.D2086H 0.32 unknown(0) TCGA-78-7536-01 8 10465782 10465782 C A RP1L1 Missense_Mutation p.E1942D 0.47 unknown(0) TCGA-78-7536-01 8 10467877 10467877 T A RP1L1 Missense_Mutation p.Y1244F 0.38 benign(0) TCGA-78-7536-01 8 10469837 10469837 C A RP1L1 Missense_Mutation p.A591S 0.12 benign(0.344) TCGA-78-7536-01 8 106815123 106815123 C A ZFPM2 Missense_Mutation p.T938N 0.40 tolerated_low_confidence(0.14) possibly_damaging(0.51) TCGA-78-7536-01 8 10755777 10755777 C A XKR6 Silent p.R537R 0.42 TCGA-78-7536-01 8 11174306 11174306 G T MTMR9 Missense_Mutation p.C413F 0.28 tolerated(0.41) benign(0.013) TCGA-78-7536-01 8 113960063 113960063 A T CSMD3 Missense_Mutation p.D488E 0.11 deleterious(0.01) possibly_damaging(0.76) TCGA-78-7536-01 8 11687842 11687842 C G FDFT1 Silent p.T264T 0.31 TCGA-78-7536-01 8 121344966 121344966 G C COL14A1 Missense_Mutation p.G1593R 0.23 deleterious(0) probably_damaging(1) TCGA-78-7536-01 8 12957737 12957737 C A DLC1 Missense_Mutation p.M703I 0.41 tolerated(0.34) benign(0.001) TCGA-78-7536-01 8 130760847 130760847 T A GSDMC Missense_Mutation p.E476V 0.13 deleterious(0) probably_damaging(0.983) TCGA-78-7536-01 8 142450389 142450389 G T CTD-3064M3.7 3'Flank 0.42 TCGA-78-7536-01 8 143994079 143994079 C A CYP11B2 Missense_Mutation p.R422L 0.54 tolerated(0.07) benign(0.178) TCGA-78-7536-01 8 144733608 144733608 G T ZNF623 Missense_Mutation p.L522F 0.34 tolerated_low_confidence(0.1) benign(0.003) TCGA-78-7536-01 8 145161324 145161324 G T MAF1 Missense_Mutation p.A153S 0.39 tolerated(0.17) benign(0.4) TCGA-78-7536-01 8 17401089 17401089 A C SLC7A2 Missense_Mutation p.M121L 0.31 tolerated(1) benign(0.004) TCGA-78-7536-01 8 17513510 17513510 T - MTUS1 Frame_Shift_Del p.A991Hfs*50 0.32 TCGA-78-7536-01 8 19813423 19813423 G A LPL Missense_Mutation p.E283K 0.46 tolerated(0.06) benign(0.145) TCGA-78-7536-01 8 35608159 35608159 G C UNC5D Silent p.A665A 0.31 TCGA-78-7536-01 8 41546073 41546073 G T ANK1 Missense_Mutation p.T1421K 0.32 deleterious(0.01) probably_damaging(0.985) TCGA-78-7536-01 8 42188605 42188605 G T IKBKB 3'UTR 0.52 TCGA-78-7536-01 8 42188606 42188606 G T IKBKB 3'UTR 0.50 TCGA-78-7536-01 8 42978145 42978145 G A POMK 3'UTR 0.23 TCGA-78-7536-01 8 43025733 43025733 G T HGSNAT Silent p.L213L 0.44 TCGA-78-7536-01 8 51617187 51617187 C A SNTG1 Missense_Mutation p.Q356K 0.49 tolerated(0.07) benign(0.001) TCGA-78-7536-01 8 51705364 51705364 C A SNTG1 Missense_Mutation p.T510K 0.42 tolerated_low_confidence(0.12) unknown(0) TCGA-78-7536-01 8 52366215 52366215 C A PXDNL Silent p.L371L 0.56 TCGA-78-7536-01 8 61754571 61754571 A T CHD7 Missense_Mutation p.S1604C 0.13 probably_damaging(0.995) TCGA-78-7536-01 8 63951236 63951236 G A GGH Missense_Mutation p.A31V 0.36 tolerated(0.07) benign(0.003) TCGA-78-7536-01 8 68044212 68044212 A G CSPP1 Missense_Mutation p.K570R 0.31 tolerated(0.46) possibly_damaging(0.772) TCGA-78-7536-01 8 71593465 71593465 T A XKR9 Missense_Mutation p.F58I 0.05 deleterious(0) probably_damaging(0.956) TCGA-78-7536-01 8 74235015 74235015 G T RDH10 Missense_Mutation p.R291L 0.49 deleterious(0) probably_damaging(0.951) TCGA-78-7536-01 8 75227360 75227360 C A JPH1 Missense_Mutation p.G292V 0.49 deleterious(0) probably_damaging(0.999) TCGA-78-7536-01 8 86240798 86240798 A T CA1 Silent p.A259A 0.10 TCGA-78-7536-01 8 92261894 92261894 G A SLC26A7 Silent p.K5K 0.41 TCGA-78-7536-01 8 94747176 94747176 G A RBM12B Missense_Mutation p.S488F 0.05 deleterious(0.03) probably_damaging(0.909) TCGA-78-7536-01 9 104152812 104152812 G A MRPL50 Missense_Mutation p.S138F 0.82 deleterious(0) probably_damaging(0.989) TCGA-78-7536-01 9 117240967 117240967 T A DFNB31 Missense_Mutation p.T235S 0.89 tolerated(0.38) benign(0.098) TCGA-78-7536-01 9 118949571 118949571 T C PAPPA Missense_Mutation p.I185T 0.21 deleterious(0.03) possibly_damaging(0.623) TCGA-78-7536-01 9 125935997 125935997 G - STRBP Frame_Shift_Del p.L117Cfs*2 0.27 TCGA-78-7536-01 9 131802959 131802959 C T FAM73B Missense_Mutation p.T29M 0.27 deleterious(0) probably_damaging(0.97) TCGA-78-7536-01 9 132988695 132988695 G T NCS1 Nonsense_Mutation p.E168* 0.35 TCGA-78-7536-01 9 134354714 134354714 G T PRRC2B Nonsense_Mutation p.E1612* 0.54 TCGA-78-7536-01 9 137701111 137701111 G A COL5A1 Missense_Mutation p.G1150D 0.23 unknown(0) TCGA-78-7536-01 9 139650984 139650984 G T LCN8 Missense_Mutation p.F72L 0.43 deleterious(0.01) possibly_damaging(0.894) TCGA-78-7536-01 9 18777002 18777002 G T ADAMTSL1 Silent p.T925T 0.20 TCGA-78-7536-01 9 3247997 3247997 A C RFX3 Intron 0.04 TCGA-78-7536-01 9 32635372 32635372 C A TAF1L Missense_Mutation p.G69V 0.24 deleterious(0) probably_damaging(0.992) TCGA-78-7536-01 9 34709603 34709603 G T CCL21 Missense_Mutation p.H89N 0.50 deleterious(0.01) benign(0.079) TCGA-78-7536-01 9 35043482 35043482 C A C9orf131 Missense_Mutation p.L286I 0.57 tolerated(0.1) possibly_damaging(0.453) TCGA-78-7536-01 9 67926844 67926844 G T ANKRD20A1 5'UTR 0.79 TCGA-78-7536-01 9 71628468 71628468 G - PRKACG Frame_Shift_Del p.L181Cfs*3 0.54 TCGA-78-7536-01 9 79403395 79403395 A C PRUNE2 Intron 0.33 TCGA-78-7536-01 9 84530665 84530665 C A SPATA31D5P RNA 0.83 TCGA-78-7536-01 9 84531667 84531667 C A SPATA31D5P RNA 0.78 TCGA-78-7536-01 9 85615133 85615133 G A RASEF Silent p.L558L 0.93 TCGA-78-7536-01 9 99521621 99521621 A G ZNF510 Silent p.F497F 0.89 TCGA-78-7536-01 X 100515726 100515726 A T DRP2 3'UTR 0.88 TCGA-78-7536-01 X 106033448 106033448 G T RNF128 Missense_Mutation p.W307L 0.72 deleterious(0) possibly_damaging(0.628) TCGA-78-7536-01 X 111090519 111090519 A G TRPC5 Missense_Mutation p.I508T 0.85 deleterious(0) probably_damaging(0.986) TCGA-78-7536-01 X 12516865 12516865 C T FRMPD4 Silent p.P36P 0.96 TCGA-78-7536-01 X 125685292 125685292 G T DCAF12L1 Missense_Mutation p.H434N 0.73 deleterious(0) probably_damaging(0.999) TCGA-78-7536-01 X 12938504 12938504 C A TLR8 Missense_Mutation p.R449S 0.87 tolerated(0.92) benign(0.002) TCGA-78-7536-01 X 129499495 129499495 A T SLC25A14 Intron 0.76 TCGA-78-7536-01 X 134994064 134994064 G T SAGE1 Missense_Mutation p.D825Y 0.71 tolerated(0.22) probably_damaging(0.98) TCGA-78-7536-01 X 140969201 140969201 C T MAGEC3 Silent p.S176S 0.77 TCGA-78-7536-01 X 140993867 140993867 A T MAGEC1 Missense_Mutation p.E226V 0.40 deleterious_low_confidence(0) unknown(0) TCGA-78-7536-01 X 140994077 140994077 A T MAGEC1 Missense_Mutation p.E296V 0.41 deleterious_low_confidence(0) unknown(0) TCGA-78-7536-01 X 144904472 144904472 G T SLITRK2 Missense_Mutation p.V177L 0.78 tolerated(1) benign(0.023) TCGA-78-7536-01 X 148796170 148796170 C A MAGEA11 Missense_Mutation p.F42L 0.73 tolerated_low_confidence(0.18) possibly_damaging(0.483) TCGA-78-7536-01 X 2406920 2406920 G A ZBED1 Missense_Mutation p.T614M 0.36 deleterious(0.03) probably_damaging(0.989) TCGA-78-7536-01 X 30237129 30237129 G T MAGEB2 Missense_Mutation p.R144S 0.47 deleterious(0.05) benign(0.2) TCGA-78-7536-01 X 31089890 31089890 C A FTHL17 Missense_Mutation p.D61Y 0.48 tolerated(0.06) benign(0.216) TCGA-78-7536-01 X 3239833 3239833 G T MXRA5 Missense_Mutation p.T1298N 0.85 deleterious(0.04) benign(0.014) TCGA-78-7536-01 X 34149868 34149868 G A FAM47A Silent p.P176P 0.83 TCGA-78-7536-01 X 34149869 34149869 G T FAM47A Missense_Mutation p.P176H 0.85 tolerated(0.08) probably_damaging(0.997) TCGA-78-7536-01 X 44703516 44703516 T C DUSP21 Silent p.N46N 0.72 TCGA-78-7536-01 X 44966737 44966737 G T KDM6A Missense_Mutation p.G1321W 0.88 deleterious(0) probably_damaging(0.957) TCGA-78-7536-01 X 49370636 49370636 T C GAGE1 3'UTR 0.29 TCGA-78-7536-01 X 591588 591588 C A SHOX 5'UTR 0.77 TCGA-78-7536-01 X 65479949 65479949 A G HEPH Missense_Mutation p.E1069G 0.14 tolerated(0.94) benign(0.207) TCGA-78-7536-01 X 77913898 77913898 G T ZCCHC5 Missense_Mutation p.A7D 0.64 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-78-7537-01 10 13217680 13217680 A T MCM10 Missense_Mutation p.R256W 0.33 deleterious(0) probably_damaging(0.996) TCGA-78-7537-01 10 135003264 135003264 G A KNDC1 Missense_Mutation p.D508N 0.26 tolerated(0.64) benign(0.001) TCGA-78-7537-01 10 45496165 45496165 G - C10orf25 Frame_Shift_Del p.P48Qfs*8 0.25 TCGA-78-7537-01 10 61014003 61014003 G A FAM13C Intron 0.38 TCGA-78-7537-01 10 93767940 93767940 C A BTAF1 Silent p.R1241R 0.34 TCGA-78-7537-01 10 93767954 93767954 G C BTAF1 Missense_Mutation p.E1245D 0.34 tolerated(0.34) benign(0.134) TCGA-78-7537-01 10 96341154 96341154 G A HELLS Silent p.R368R 0.40 TCGA-78-7537-01 11 1464822 1464822 T C BRSK2 Missense_Mutation p.L292P 0.50 deleterious(0) probably_damaging(0.991) TCGA-78-7537-01 11 3380864 3380864 C G ZNF195 Missense_Mutation p.R458S 0.44 tolerated(0.24) possibly_damaging(0.902) TCGA-78-7537-01 11 5410885 5410885 G T OR51M1 Missense_Mutation p.C86F 0.35 deleterious(0.01) benign(0.053) TCGA-78-7537-01 11 55038219 55038219 G C TRIM48 3'UTR 0.67 TCGA-78-7537-01 11 59210760 59210760 C A OR5A1 Missense_Mutation p.T40N 0.35 deleterious(0) benign(0.065) TCGA-78-7537-01 11 67209009 67209009 C T CORO1B Intron 0.48 TCGA-78-7537-01 11 7111194 7111194 G T RBMXL2 Missense_Mutation p.E281D 0.40 tolerated(1) benign(0.007) TCGA-78-7537-01 12 110370853 110370853 T C GIT2 Missense_Mutation p.Q737R 0.28 deleterious(0) probably_damaging(0.998) TCGA-78-7537-01 12 11175134 11175134 C G TAS2R19 Missense_Mutation p.V13L 0.29 tolerated(0.37) benign(0.03) TCGA-78-7537-01 12 125621282 125621282 C G AACS Missense_Mutation p.L585V 0.31 deleterious(0) probably_damaging(0.999) TCGA-78-7537-01 12 130847575 130847575 C A PIWIL1 Missense_Mutation p.P694H 0.28 deleterious(0) probably_damaging(0.997) TCGA-78-7537-01 12 49374357 49374357 G T WNT1 Missense_Mutation p.C170F 0.27 deleterious(0) probably_damaging(1) TCGA-78-7537-01 12 53012229 53012229 C - KRT73 Frame_Shift_Del p.G27Afs*91 0.36 TCGA-78-7537-01 12 54677000 54677000 G T HNRNPA1 Missense_Mutation p.G297C 0.31 deleterious(0.01) unknown(0) TCGA-78-7537-01 12 6103248 6103248 G C VWF Missense_Mutation p.I2126M 0.40 tolerated(0.17) benign(0.024) TCGA-78-7537-01 12 6923458 6923458 T C CD4 Missense_Mutation p.V122A 0.44 deleterious(0.02) probably_damaging(0.963) TCGA-78-7537-01 12 6972375 6972375 G A USP5 Silent p.E596E 0.05 TCGA-78-7537-01 12 7894063 7894063 C A CLEC4C Missense_Mutation p.Q63H 0.31 tolerated(0.11) possibly_damaging(0.719) TCGA-78-7537-01 12 96388596 96388604 TGCTGTATC - HAL Splice_Site p.X103_splice 0.28 TCGA-78-7537-01 12 99076942 99076942 G A APAF1 Missense_Mutation p.E690K 0.43 tolerated(0.76) benign(0.008) TCGA-78-7537-01 13 53286940 53286940 G T LECT1 Missense_Mutation p.P178H 0.31 deleterious(0) probably_damaging(0.976) TCGA-78-7537-01 14 105408344 105408344 T A AHNAK2 Missense_Mutation p.I4482F 0.36 benign(0.176) TCGA-78-7537-01 14 70418906 70418906 C T SMOC1 Nonsense_Mutation p.Q51* 0.37 TCGA-78-7537-01 14 74824076 74824076 A T VRTN Missense_Mutation p.K197M 0.35 deleterious(0) probably_damaging(0.933) TCGA-78-7537-01 14 88417089 88417089 G A GALC Missense_Mutation p.H389Y 0.31 tolerated(0.12) benign(0.014) TCGA-78-7537-01 15 100636675 100636675 C T ADAMTS17 Missense_Mutation p.G675S 0.33 deleterious(0) probably_damaging(0.999) TCGA-78-7537-01 15 40093256 40093256 T C GPR176 3'UTR 0.06 TCGA-78-7537-01 15 55790623 55790623 G T DYX1C1 5'UTR 0.32 TCGA-78-7537-01 15 56726471 56726471 A T MNS1 Silent p.T378T 0.35 TCGA-78-7537-01 15 72968691 72968691 G C HIGD2B Missense_Mutation p.P9A 0.43 deleterious(0.03) benign(0.352) TCGA-78-7537-01 15 75655060 75655060 T A MAN2C1 Missense_Mutation p.R274W 0.30 deleterious(0) probably_damaging(0.999) TCGA-78-7537-01 15 86262350 86262350 C T AKAP13 Silent p.I2019I 0.20 TCGA-78-7537-01 15 90378752 90378752 C T C15orf38-AP3S2 Missense_Mutation p.V394I 0.34 tolerated_low_confidence(0.15) benign(0.417) TCGA-78-7537-01 16 28970370 28970370 C A NFATC2IP Silent p.L350L 0.35 TCGA-78-7537-01 16 31485720 31485720 A G TGFB1I1 Missense_Mutation p.T155A 0.36 tolerated(0.23) benign(0.405) TCGA-78-7537-01 16 66437039 66437039 C A CDH5 Nonsense_Mutation p.Y774* 0.18 TCGA-78-7537-01 16 71411645 71411645 A G CALB2 Missense_Mutation p.M113V 0.38 deleterious(0) benign(0.041) TCGA-78-7537-01 17 15950288 15950288 G C NCOR1 Missense_Mutation p.S2219C 0.06 probably_damaging(0.997) TCGA-78-7537-01 17 17119768 17119768 T A FLCN Missense_Mutation p.Y409F 0.36 deleterious(0.02) possibly_damaging(0.659) TCGA-78-7537-01 17 21826310 21826310 C A FAM27L RNA 0.40 TCGA-78-7537-01 17 27287897 27287897 C A SEZ6 Missense_Mutation p.W445C 0.26 deleterious(0) probably_damaging(1) TCGA-78-7537-01 17 32957120 32957120 G T TMEM132E Missense_Mutation p.D388Y 0.13 deleterious(0) probably_damaging(0.992) TCGA-78-7537-01 17 38319155 38319155 G T CASC3 Splice_Site p.X262_splice 0.38 TCGA-78-7537-01 17 42230076 42230076 G T C17orf53 Silent p.T460T 0.44 TCGA-78-7537-01 17 5048007 5048007 C T USP6 Missense_Mutation p.P614L 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-78-7537-01 17 53485141 53485141 T A MMD Missense_Mutation p.I104F 0.42 deleterious(0) probably_damaging(0.994) TCGA-78-7537-01 17 56060517 56060517 G A VEZF1 Missense_Mutation p.R91C 0.08 deleterious(0) probably_damaging(0.998) TCGA-78-7537-01 17 74622818 74622818 G A ST6GALNAC1 Missense_Mutation p.S409F 0.33 probably_damaging(0.992) TCGA-78-7537-01 17 9774129 9774129 G C GLP2R Missense_Mutation p.M374I 0.36 deleterious(0.01) possibly_damaging(0.643) TCGA-78-7537-01 18 10671492 10671492 T C PIEZO2 3'Flank 0.27 TCGA-78-7537-01 18 2847877 2847877 C A EMILIN2 Missense_Mutation p.Q69K 0.29 tolerated(0.06) probably_damaging(0.998) TCGA-78-7537-01 18 29125825 29125825 T G DSG2 Missense_Mutation p.L826V 0.09 deleterious(0) probably_damaging(0.999) TCGA-78-7537-01 18 3089175 3089175 G T MYOM1 Nonsense_Mutation p.C1378* 0.26 TCGA-78-7537-01 18 34854516 34854516 C T CELF4 Intron 0.12 TCGA-78-7537-01 19 10782177 10782177 A T ILF3 Missense_Mutation p.D126V 0.06 tolerated(0.09) benign(0.362) TCGA-78-7537-01 19 11238726 11238726 G T LDLR Missense_Mutation p.S785I 0.41 tolerated(0.19) benign(0.035) TCGA-78-7537-01 19 18255920 18255920 G T MAST3 Missense_Mutation p.G945C 0.41 deleterious(0.04) benign(0.376) TCGA-78-7537-01 19 2290056 2290056 C A LINGO3 Missense_Mutation p.G574W 0.50 deleterious(0) probably_damaging(0.997) TCGA-78-7537-01 19 38939306 38939306 C A RYR1 Silent p.A325A 0.07 TCGA-78-7537-01 19 53303512 53303512 C - ZNF28 Frame_Shift_Del p.G529Afs*95 0.25 TCGA-78-7537-01 19 53770687 53770687 G T VN1R4 Missense_Mutation p.L78I 0.33 tolerated(0.42) benign(0.001) TCGA-78-7537-01 19 54416105 54416105 G T CACNG7 Missense_Mutation p.R7L 0.33 tolerated(0.06) benign(0.38) TCGA-78-7537-01 19 54742891 54742891 C A LILRA6 Missense_Mutation p.G462W 0.18 deleterious(0) possibly_damaging(0.907) TCGA-78-7537-01 19 55220839 55220839 T A AC098784.2 3'Flank 0.20 TCGA-78-7537-01 19 56539033 56539033 C T NLRP5 Silent p.C478C 0.24 TCGA-78-7537-01 19 57184245 57184245 A T ZNF835 5'Flank 0.33 TCGA-78-7537-01 19 57327218 57327218 A T PEG3 Nonsense_Mutation p.Y864* 0.33 TCGA-78-7537-01 19 57640738 57640738 G CT USP29 Frame_Shift_Ins p.C232Sfs*2 0.28 TCGA-78-7537-01 19 58565111 58565111 T A ZSCAN1 Missense_Mutation p.F307I 0.30 tolerated(0.05) probably_damaging(0.996) TCGA-78-7537-01 19 58596165 58596165 C A ZSCAN18 Missense_Mutation p.A530S 0.30 deleterious(0.04) benign(0.07) TCGA-78-7537-01 19 58596514 58596514 C A ZSCAN18 Missense_Mutation p.Q413H 0.39 deleterious(0.01) benign(0.399) TCGA-78-7537-01 19 7620649 7620649 G C PNPLA6 Missense_Mutation p.K1041N 0.33 tolerated(0.09) benign(0.028) TCGA-78-7537-01 19 7622093 7622093 C T PNPLA6 Missense_Mutation p.S1117L 0.25 deleterious(0) possibly_damaging(0.903) TCGA-78-7537-01 19 889717 889717 C - MED16 Frame_Shift_Del p.G123Afs*3 0.42 TCGA-78-7537-01 1 103412505 103412505 G T COL11A1 Missense_Mutation p.P1059Q 0.40 unknown(0) TCGA-78-7537-01 1 112524989 112524989 G C KCND3 Missense_Mutation p.F120L 0.29 deleterious(0) benign(0.416) TCGA-78-7537-01 1 119923249 119923249 T C HAO2 Intron 0.30 TCGA-78-7537-01 1 120351358 120351358 A T REG4 Missense_Mutation p.L12Q 0.29 deleterious(0) unknown(0) TCGA-78-7537-01 1 155258202 155258202 C T HCN3 Missense_Mutation p.P758L 0.19 deleterious_low_confidence(0.01) benign(0.001) TCGA-78-7537-01 1 16778419 16778419 A T NECAP2 Silent p.P192P 0.30 TCGA-78-7537-01 1 180235559 180235559 A T LHX4 Missense_Mutation p.Q94L 0.04 tolerated(0.43) benign(0.111) TCGA-78-7537-01 1 186645094 186645094 G A PTGS2 Missense_Mutation p.S398F 0.05 deleterious(0.02) possibly_damaging(0.716) TCGA-78-7537-01 1 202931772 202931772 G A CYB5R1 Silent p.P267P 0.04 TCGA-78-7537-01 1 207782718 207782718 G T CR1 Missense_Mutation p.V1994L 0.22 deleterious(0.02) probably_damaging(0.988) TCGA-78-7537-01 1 209789849 209789850 - A LAMB3 Frame_Shift_Ins p.G1117Wfs*43 0.23 TCGA-78-7537-01 1 215824106 215824106 C G USH2A Missense_Mutation p.S4724T 0.30 benign(0.033) TCGA-78-7537-01 1 235937220 235937220 T C LYST Silent p.V1902V 0.30 TCGA-78-7537-01 1 248112914 248112914 C A OR2L8 Missense_Mutation p.A252E 0.19 deleterious(0.01) possibly_damaging(0.86) TCGA-78-7537-01 1 248512689 248512689 G T OR14C36 Missense_Mutation p.G205C 0.22 tolerated(0.27) benign(0.071) TCGA-78-7537-01 1 75175927 75175927 C T CRYZ Missense_Mutation p.G162E 0.30 deleterious(0) probably_damaging(1) TCGA-78-7537-01 1 77759485 77759485 T A AK5 Silent p.P85P 0.34 TCGA-78-7537-01 1 978821 978821 G T AGRN Silent p.A529A 0.33 TCGA-78-7537-01 1 99387536 99387536 C G LPPR5 Missense_Mutation p.A234P 0.25 deleterious(0) probably_damaging(1) TCGA-78-7537-01 20 1600516 1600516 T G SIRPB1 Silent p.T25T 0.26 TCGA-78-7537-01 20 33867858 33867858 G A EIF6 Nonsense_Mutation p.Q145* 0.72 TCGA-78-7537-01 20 61488943 61488943 G A TCFL5 Missense_Mutation p.R348C 0.12 tolerated(0.06) possibly_damaging(0.891) TCGA-78-7537-01 20 62831276 62831276 G T MYT1 Splice_Site p.X29_splice 0.08 TCGA-78-7537-01 21 15013702 15013702 C A POTED Missense_Mutation p.R524S 0.47 deleterious(0.01) benign(0.067) TCGA-78-7537-01 21 31587992 31587992 C A CLDN8 Missense_Mutation p.M84I 0.38 deleterious(0) probably_damaging(0.996) TCGA-78-7537-01 22 16449114 16449114 C A OR11H1 Nonsense_Mutation p.G231* 0.25 TCGA-78-7537-01 22 20729853 20729853 C A USP41 Missense_Mutation p.K109N 0.24 deleterious(0.05) probably_damaging(0.913) TCGA-78-7537-01 22 32810207 32810207 G A BPIFC 3'UTR 0.29 TCGA-78-7537-01 22 38046679 38046679 G T SH3BP1 Silent p.P515P 0.44 TCGA-78-7537-01 2 11053919 11053919 C A KCNF1 Missense_Mutation p.P456H 0.35 tolerated(0.12) benign(0.022) TCGA-78-7537-01 2 130912768 130912768 C G SMPD4 Missense_Mutation p.A491P 0.27 deleterious(0) probably_damaging(0.977) TCGA-78-7537-01 2 138163263 138163263 G T THSD7B Missense_Mutation p.V861L 0.20 deleterious(0.03) benign(0.198) TCGA-78-7537-01 2 197645236 197645236 T C GTF3C3 Intron 0.27 TCGA-78-7537-01 2 208994322 208994322 C A CRYGC Missense_Mutation p.R32L 0.34 deleterious(0.02) benign(0.078) TCGA-78-7537-01 2 220285261 220285261 G A DES Silent p.Q260Q 0.45 TCGA-78-7537-01 2 27802438 27802438 C T C2orf16 Missense_Mutation p.T1000I 0.29 deleterious(0.05) possibly_damaging(0.623) TCGA-78-7537-01 2 31621491 31621491 C A XDH Silent p.L127L 0.36 TCGA-78-7537-01 2 49217720 49217720 A T FSHR Missense_Mutation p.L144H 0.30 tolerated(0.46) benign(0.035) TCGA-78-7537-01 2 79312255 79312255 G T REG1B 3'UTR 0.31 TCGA-78-7537-01 3 10443877 10443877 G A ATP2B2 Missense_Mutation p.R185C 0.03 deleterious(0) probably_damaging(0.999) TCGA-78-7537-01 3 11059634 11059634 T A SLC6A1 Missense_Mutation p.V115E 0.30 deleterious(0) possibly_damaging(0.905) TCGA-78-7537-01 3 18436169 18436180 ACTGCTGGTTCA - SATB1 In_Frame_Del p.L327_Y331delinsH 0.33 TCGA-78-7537-01 3 33870389 33870389 C T PDCD6IP Silent p.A259A 0.31 TCGA-78-7537-01 3 38616901 38616901 G T SCN5A Missense_Mutation p.Q1185K 0.50 tolerated(1) possibly_damaging(0.458) TCGA-78-7537-01 3 67058585 67058585 G T KBTBD8 Missense_Mutation p.V528L 0.44 tolerated(0.18) benign(0.012) TCGA-78-7537-01 3 87017927 87017927 A T VGLL3 Silent p.P250P 0.40 TCGA-78-7537-01 4 177143562 177143562 C G ASB5 Missense_Mutation p.V96L 0.41 deleterious(0) possibly_damaging(0.812) TCGA-78-7537-01 4 46099217 46099217 C T GABRG1 Splice_Site p.X85_splice 0.37 TCGA-78-7537-01 4 5800495 5800495 G T EVC Silent p.R760R 0.24 TCGA-78-7537-01 5 112926863 112926863 A T YTHDC2 Missense_Mutation p.E1317D 0.33 tolerated(0.06) probably_damaging(0.997) TCGA-78-7537-01 5 140237734 140237734 G T PCDHA10 Missense_Mutation p.A701S 0.20 deleterious_low_confidence(0.04) probably_damaging(0.934) TCGA-78-7537-01 5 140503980 140503980 A T PCDHB4 3'UTR 0.29 TCGA-78-7537-01 5 140736604 140736604 G T PCDHGA4 Nonsense_Mutation p.E613* 0.34 TCGA-78-7537-01 5 141051832 141051832 C A ARAP3 Missense_Mutation p.W474C 0.32 deleterious(0) probably_damaging(0.999) TCGA-78-7537-01 5 147830764 147830764 A T HTR4 Missense_Mutation p.L383Q 0.29 tolerated_low_confidence(0.78) benign(0) TCGA-78-7537-01 5 151784497 151784497 C - NMUR2 Frame_Shift_Del p.V60Sfs*10 0.31 TCGA-78-7537-01 5 174938509 174938509 G T SFXN1 Nonsense_Mutation p.G164* 0.32 TCGA-78-7537-01 5 57751897 57751897 A T PLK2 Missense_Mutation p.M447K 0.38 tolerated(0.16) benign(0.196) TCGA-78-7537-01 5 75919062 75919062 G A F2RL2 5'UTR 0.29 TCGA-78-7537-01 5 82836167 82836167 C A VCAN Missense_Mutation p.Q2449K 0.34 deleterious(0.05) benign(0.008) TCGA-78-7537-01 5 82948298 82948298 G A HAPLN1 Missense_Mutation p.T149I 0.32 tolerated(0.17) benign(0.01) TCGA-78-7537-01 6 122792857 122792857 G A SERINC1 Missense_Mutation p.S9F 0.34 deleterious(0.01) possibly_damaging(0.563) TCGA-78-7537-01 6 30539260 30539260 C T ABCF1 5'UTR 0.32 TCGA-78-7537-01 6 31760560 31760560 C A VARS Missense_Mutation p.G212V 0.33 tolerated(0.07) benign(0.01) TCGA-78-7537-01 6 32089112 32089112 C T ATF6B Silent p.K164K 0.30 TCGA-78-7537-01 6 33608316 33608316 C T ITPR3 Missense_Mutation p.P49S 0.29 deleterious(0) probably_damaging(0.952) TCGA-78-7537-01 6 36269663 36269663 C T PNPLA1 Silent p.S267S 0.28 TCGA-78-7537-01 6 44216444 44216445 - CTCAT HSP90AB1 Frame_Shift_Ins p.I29Sfs*17 0.24 TCGA-78-7537-01 6 44278144 44278144 C - AARS2 Frame_Shift_Del p.H263Mfs*47 0.18 TCGA-78-7537-01 6 64422791 64422791 C T PHF3 Silent p.N1769N 0.33 TCGA-78-7537-01 6 86181041 86181041 G T NT5E Missense_Mutation p.A217S 0.29 deleterious(0) probably_damaging(0.998) TCGA-78-7537-01 6 87725613 87725613 G A HTR1E Silent p.T187T 0.24 TCGA-78-7537-01 7 100320640 100320640 C T EPO Missense_Mutation p.P156S 0.34 tolerated(0.07) possibly_damaging(0.845) TCGA-78-7537-01 7 112579784 112579784 G C C7orf60 Missense_Mutation p.R8G 0.40 tolerated_low_confidence(0.12) benign(0.002) TCGA-78-7537-01 7 139026046 139026046 C A C7orf55 5'UTR 0.28 TCGA-78-7537-01 7 140481411 140481411 C A BRAF Missense_Mutation p.G466V 0.37 deleterious(0) probably_damaging(0.936) TCGA-78-7537-01 7 141770842 141770842 C T MGAM Intron 0.32 TCGA-78-7537-01 7 142021299 142021299 T A TRBV5-1 Silent p.S93S 0.39 TCGA-78-7537-01 7 2686562 2686562 T A TTYH3 Missense_Mutation p.W67R 0.25 tolerated(0.2) possibly_damaging(0.669) TCGA-78-7537-01 7 42005278 42005278 C A GLI3 Silent p.A1131A 0.34 TCGA-78-7537-01 7 75659763 75659763 C T STYXL1 Missense_Mutation p.D27N 0.21 deleterious(0) possibly_damaging(0.697) TCGA-78-7537-01 7 803547 803547 G T HEATR2 Silent p.S573S 0.23 TCGA-78-7537-01 7 81612643 81612643 C G CACNA2D1 Missense_Mutation p.K627N 0.22 tolerated(0.53) benign(0.033) TCGA-78-7537-01 7 87214992 87214992 C A ABCB1 Missense_Mutation p.R41L 0.27 deleterious(0) probably_damaging(0.945) TCGA-78-7537-01 7 92147523 92147523 C A PEX1 Missense_Mutation p.R135L 0.38 deleterious(0) probably_damaging(1) TCGA-78-7537-01 8 113988167 113988167 C A CSMD3 Missense_Mutation p.G414V 0.39 tolerated(0.5) benign(0) TCGA-78-7537-01 8 119122794 119122794 G C EXT1 Missense_Mutation p.D164E 0.36 deleterious(0.04) probably_damaging(1) TCGA-78-7537-01 8 133196573 133196573 C G KCNQ3 Missense_Mutation p.L173F 0.39 tolerated(0.08) probably_damaging(0.986) TCGA-78-7537-01 8 29931542 29931542 G C TMEM66 Missense_Mutation p.L45V 0.34 deleterious(0) probably_damaging(0.998) TCGA-78-7537-01 9 130155575 130155575 G C GARNL3 3'UTR 0.47 TCGA-78-7537-01 9 131371243 131371243 G A SPTAN1 Missense_Mutation p.E1528K 0.10 tolerated(0.19) unknown(0) TCGA-78-7537-01 9 140476996 140476996 C A ZMYND19 Nonstop_Mutation p.*228Lext*79 0.26 TCGA-78-7537-01 9 8389318 8389318 C A PTPRD Nonsense_Mutation p.E1434* 0.29 TCGA-78-7537-01 9 894137 894137 A T DMRT1 Missense_Mutation p.N255I 0.30 deleterious(0) possibly_damaging(0.824) TCGA-78-7537-01 9 99798884 99798884 C A CTSV Missense_Mutation p.G181V 0.34 deleterious(0) probably_damaging(1) TCGA-78-7537-01 X 119387407 119387407 A T ZBTB33 Missense_Mutation p.H46L 0.65 deleterious(0) probably_damaging(1) TCGA-78-7537-01 X 153136268 153136268 G A L1CAM Missense_Mutation p.P224L 0.46 deleterious(0) probably_damaging(0.995) TCGA-78-7537-01 X 47032582 47032582 G - RBM10 Frame_Shift_Del p.N164Tfs*102 0.51 TCGA-78-7537-01 X 54040885 54040885 G A PHF8 Silent p.L272L 0.71 TCGA-78-7537-01 X 77912927 77912927 G A ZCCHC5 Nonsense_Mutation p.Q331* 0.81 TCGA-78-7539-01 10 100481571 100481571 G A HPSE2 Missense_Mutation p.R267W 0.26 tolerated(0.07) probably_damaging(1) TCGA-78-7539-01 10 102719322 102719322 G C FAM178A Missense_Mutation p.L1185F 0.24 deleterious_low_confidence(0) unknown(0) TCGA-78-7539-01 10 103292112 103292112 G C BTRC Missense_Mutation p.E301Q 0.12 deleterious(0.03) benign(0.099) TCGA-78-7539-01 10 105947204 105947204 G C WDR96 Missense_Mutation p.I578M 0.19 tolerated(0.2) benign(0.06) TCGA-78-7539-01 10 112341740 112341740 C G SMC3 Missense_Mutation p.L203V 0.18 deleterious(0) probably_damaging(0.993) TCGA-78-7539-01 10 115970636 115970636 C T TDRD1 Nonsense_Mutation p.Q524* 0.17 TCGA-78-7539-01 10 116889092 116889092 C G ATRNL1 Missense_Mutation p.I208M 0.12 tolerated(0.1) benign(0.062) TCGA-78-7539-01 10 118236285 118236285 T C PNLIPRP3 Silent p.L432L 0.44 TCGA-78-7539-01 10 121541266 121541266 C G INPP5F Missense_Mutation p.Q100E 0.25 tolerated(0.58) possibly_damaging(0.454) TCGA-78-7539-01 10 122349025 122349025 G C PPAPDC1A 3'UTR 0.17 TCGA-78-7539-01 10 125447685 125447685 G T GPR26 3'UTR 0.37 TCGA-78-7539-01 10 135369180 135369180 C T SYCE1 Missense_Mutation p.E251K 0.13 tolerated(0.27) benign(0.311) TCGA-78-7539-01 10 37505151 37505151 G T ANKRD30A Missense_Mutation p.C915F 0.34 tolerated(0.62) possibly_damaging(0.831) TCGA-78-7539-01 10 43326498 43326498 G C BMS1 Missense_Mutation p.R1268T 0.20 deleterious(0.01) benign(0.195) TCGA-78-7539-01 10 5948241 5948241 G T FBXO18 Missense_Mutation p.Q184H 0.26 tolerated(0.33) benign(0.002) TCGA-78-7539-01 10 61666021 61666021 G A CCDC6 Silent p.F54F 0.43 TCGA-78-7539-01 10 64573000 64573000 G A EGR2 Silent p.L466L 0.18 TCGA-78-7539-01 10 68526048 68526048 G A CTNNA3 Missense_Mutation p.H419Y 0.10 deleterious(0.05) benign(0.002) TCGA-78-7539-01 10 68857373 68857373 T A LRRTM3 Missense_Mutation p.F522Y 0.06 tolerated_low_confidence(0.63) benign(0.026) TCGA-78-7539-01 10 75542100 75542100 G C CHCHD1 Missense_Mutation p.E48D 0.27 deleterious(0.05) possibly_damaging(0.585) TCGA-78-7539-01 10 7822262 7822262 C T KIN Missense_Mutation p.R73Q 0.09 tolerated(0.3) benign(0.014) TCGA-78-7539-01 10 79793539 79793539 C T RPS24 5'UTR 0.14 TCGA-78-7539-01 10 86017689 86017689 G - RGR Frame_Shift_Del p.G229Afs*15 0.19 TCGA-78-7539-01 11 1025347 1025347 C T MUC6 Silent p.A940A 0.20 TCGA-78-7539-01 11 102980339 102980339 C T DYNC2H1 Silent p.F12F 0.13 TCGA-78-7539-01 11 107965677 107965677 G T CUL5 Missense_Mutation p.R569I 0.08 deleterious(0) probably_damaging(0.965) TCGA-78-7539-01 11 108143265 108143265 A - ATM Frame_Shift_Del p.T1029Qfs*10 0.39 TCGA-78-7539-01 11 108385075 108385075 C G EXPH5 Missense_Mutation p.E387Q 0.05 deleterious(0.02) possibly_damaging(0.868) TCGA-78-7539-01 11 112104366 112104366 G A PTS 3'UTR 0.80 TCGA-78-7539-01 11 12247773 12247773 G C MICAL2 Missense_Mutation p.D582H 0.12 deleterious(0) probably_damaging(1) TCGA-78-7539-01 11 125359520 125359520 C T FEZ1 Missense_Mutation p.E52K 0.08 deleterious(0) probably_damaging(0.986) TCGA-78-7539-01 11 125483032 125483032 T A STT3A Missense_Mutation p.F505Y 0.54 tolerated(0.37) benign(0.327) TCGA-78-7539-01 11 125618573 125618573 A G PATE1 Missense_Mutation p.Y109C 0.45 deleterious(0) probably_damaging(1) TCGA-78-7539-01 11 128628062 128628062 G A FLI1 Missense_Mutation p.G24E 0.40 deleterious(0.01) benign(0.305) TCGA-78-7539-01 11 129814802 129814802 G A PRDM10 Missense_Mutation p.P209L 0.46 deleterious(0) probably_damaging(0.999) TCGA-78-7539-01 11 18723357 18723357 C T TMEM86A Missense_Mutation p.T175I 0.35 deleterious(0) probably_damaging(0.996) TCGA-78-7539-01 11 21594939 21594939 C A NELL1 Missense_Mutation p.T789K 0.28 deleterious(0) probably_damaging(0.973) TCGA-78-7539-01 11 26582638 26582638 T A MUC15 Missense_Mutation p.I354L 0.24 tolerated(0.07) benign(0.274) TCGA-78-7539-01 11 27114762 27114762 G A BBOX1 Missense_Mutation p.E128K 0.15 tolerated(0.11) benign(0.004) TCGA-78-7539-01 11 27141314 27141314 C A BBOX1 Missense_Mutation p.S253Y 0.24 deleterious(0) probably_damaging(0.953) TCGA-78-7539-01 11 27141315 27141315 C T BBOX1 Silent p.S253S 0.24 TCGA-78-7539-01 11 27393196 27393196 A G LGR4 Silent p.H515H 0.12 TCGA-78-7539-01 11 35827924 35827924 G A TRIM44 Missense_Mutation p.E342K 0.18 tolerated_low_confidence(0.07) unknown(0) TCGA-78-7539-01 11 36614707 36614707 C A RAG2 Missense_Mutation p.V338F 0.18 tolerated(0.41) benign(0.15) TCGA-78-7539-01 11 40136944 40136944 T A LRRC4C Missense_Mutation p.H300L 0.36 deleterious(0.01) possibly_damaging(0.689) TCGA-78-7539-01 11 46397681 46397681 G C DGKZ Missense_Mutation p.E881Q 0.15 tolerated(0.23) benign(0.035) TCGA-78-7539-01 11 47746106 47746106 C T FNBP4 Missense_Mutation p.E745K 0.16 deleterious(0.01) probably_damaging(0.937) TCGA-78-7539-01 11 5254244 5254244 G C HBD Missense_Mutation p.Q132E 0.16 tolerated(0.12) benign(0.134) TCGA-78-7539-01 11 55735853 55735853 G T OR10AG1 Silent p.I29I 0.47 TCGA-78-7539-01 11 55944604 55944604 C A OR5J2 Missense_Mutation p.L171I 0.28 deleterious(0.03) benign(0.288) TCGA-78-7539-01 11 5799669 5799669 G A OR52N5 Missense_Mutation p.P66S 0.13 deleterious(0.04) probably_damaging(0.931) TCGA-78-7539-01 11 59604819 59604819 G C GIF Silent p.L233L 0.23 TCGA-78-7539-01 11 59940556 59940556 A G MS4A6A Missense_Mutation p.L227P 0.25 deleterious(0) probably_damaging(0.996) TCGA-78-7539-01 11 62299280 62299280 C A AHNAK Missense_Mutation p.G870V 0.27 probably_damaging(1) TCGA-78-7539-01 11 62381824 62381824 C A ROM1 Missense_Mutation p.R229S 0.20 deleterious(0.04) benign(0.294) TCGA-78-7539-01 11 62397071 62397071 G A GANAB Missense_Mutation p.S630F 0.24 deleterious(0) probably_damaging(0.983) TCGA-78-7539-01 11 6472225 6472225 G C TRIM3 Missense_Mutation p.I589M 0.06 deleterious(0) probably_damaging(0.952) TCGA-78-7539-01 11 65124466 65124466 T A TIGD3 Missense_Mutation p.V396E 0.19 deleterious(0) possibly_damaging(0.46) TCGA-78-7539-01 11 65124468 65124468 G A TIGD3 Missense_Mutation p.D397N 0.19 tolerated(0.65) possibly_damaging(0.838) TCGA-78-7539-01 11 65293487 65293487 G C SCYL1 Missense_Mutation p.E116D 0.08 tolerated(0.2) probably_damaging(0.926) TCGA-78-7539-01 11 65360568 65360568 C T KCNK7 Missense_Mutation p.E278K 0.17 deleterious(0.03) possibly_damaging(0.735) TCGA-78-7539-01 11 65655442 65655442 G T FIBP Missense_Mutation p.Q83K 0.22 deleterious(0) probably_damaging(0.998) TCGA-78-7539-01 11 72554227 72554227 G C FCHSD2 Silent p.L558L 0.11 TCGA-78-7539-01 11 7674426 7674426 G C PPFIBP2 Missense_Mutation p.D870H 0.13 deleterious(0) possibly_damaging(0.836) TCGA-78-7539-01 11 86270746 86270746 C G ME3 Missense_Mutation p.Q101H 0.18 tolerated(0.11) benign(0.001) TCGA-78-7539-01 11 88911360 88911360 G T TYR Missense_Mutation p.W80L 0.74 deleterious(0) probably_damaging(0.999) TCGA-78-7539-01 11 8943023 8943023 T C C11orf16 Missense_Mutation p.H415R 0.39 tolerated(0.06) benign(0.051) TCGA-78-7539-01 11 9810801 9810801 C G SBF2 Missense_Mutation p.W1596S 0.10 deleterious(0.01) possibly_damaging(0.63) TCGA-78-7539-01 12 10766091 10766091 C A MAGOHB Missense_Mutation p.G14V 0.40 deleterious(0) probably_damaging(0.996) TCGA-78-7539-01 12 10865907 10865907 C T YBX3 Missense_Mutation p.G159D 0.39 tolerated(0.06) probably_damaging(0.953) TCGA-78-7539-01 12 111926358 111926358 G T ATXN2 Missense_Mutation p.T881N 0.20 probably_damaging(0.998) TCGA-78-7539-01 12 112153654 112153654 G A ACAD10 Missense_Mutation p.G325R 0.27 deleterious(0.02) possibly_damaging(0.692) TCGA-78-7539-01 12 122064796 122064796 C G ORAI1 Missense_Mutation p.S50C 0.24 deleterious(0.02) unknown(0) TCGA-78-7539-01 12 122396299 122396299 C T WDR66 Nonsense_Mutation p.Q618* 0.19 TCGA-78-7539-01 12 122623049 122623049 G A MLXIP Missense_Mutation p.E779K 0.28 deleterious(0) probably_damaging(0.993) TCGA-78-7539-01 12 123380591 123380591 C T VPS37B Missense_Mutation p.E7K 0.07 tolerated_low_confidence(0.23) benign(0.085) TCGA-78-7539-01 12 124330325 124330325 C T DNAH10 Missense_Mutation p.P1729S 0.35 benign(0.005) TCGA-78-7539-01 12 129559035 129559035 G A TMEM132D Silent p.P895P 0.21 TCGA-78-7539-01 12 130184802 130184802 C T TMEM132D Missense_Mutation p.R174Q 0.17 tolerated(0.28) benign(0.105) TCGA-78-7539-01 12 130842061 130842061 G A PIWIL1 Missense_Mutation p.R543K 0.23 tolerated(0.22) benign(0.003) TCGA-78-7539-01 12 133365817 133365817 C T GOLGA3 Silent p.L869L 0.18 TCGA-78-7539-01 12 13720004 13720004 C A GRIN2B Missense_Mutation p.M851I 0.31 tolerated(0.13) benign(0.077) TCGA-78-7539-01 12 15095518 15095518 C T ARHGDIB Missense_Mutation p.D182N 0.15 deleterious(0) probably_damaging(1) TCGA-78-7539-01 12 15637097 15637097 C T PTPRO Missense_Mutation p.H89Y 0.15 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-78-7539-01 12 15637110 15637110 A T PTPRO Missense_Mutation p.Y93F 0.18 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-78-7539-01 12 18234245 18234245 G A RERGL Silent p.I166I 0.15 TCGA-78-7539-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.31 deleterious(0.04) probably_damaging(0.993) TCGA-78-7539-01 12 3103911 3103911 G A TEAD4 5'UTR 0.16 TCGA-78-7539-01 12 32481160 32481160 G A BICD1 Missense_Mutation p.E591K 0.11 tolerated(0.24) possibly_damaging(0.542) TCGA-78-7539-01 12 34175454 34175454 C T ALG10 5'UTR 0.15 TCGA-78-7539-01 12 427406 427406 G A KDM5A Silent p.V921V 0.15 TCGA-78-7539-01 12 43826425 43826425 C A ADAMTS20 Missense_Mutation p.W970C 0.43 deleterious(0) probably_damaging(1) TCGA-78-7539-01 12 43826426 43826426 C T ADAMTS20 Nonsense_Mutation p.W970* 0.45 TCGA-78-7539-01 12 51584196 51584196 T C POU6F1 Missense_Mutation p.E247G 0.05 tolerated(0.06) possibly_damaging(0.858) TCGA-78-7539-01 12 52574327 52574327 G A KRT80 Silent p.F212F 0.18 TCGA-78-7539-01 12 52824329 52824329 G C KRT75 Missense_Mutation p.T344S 0.40 tolerated(0.37) benign(0.05) TCGA-78-7539-01 12 53457028 53457028 G A TENC1 Missense_Mutation p.D1337N 0.24 deleterious(0) possibly_damaging(0.819) TCGA-78-7539-01 12 53647661 53647661 C T MFSD5 Silent p.L455L 0.18 TCGA-78-7539-01 12 57863408 57863408 C G GLI1 Silent p.L501L 0.24 TCGA-78-7539-01 12 6428049 6428049 T C PLEKHG6 Intron 0.22 TCGA-78-7539-01 12 78452786 78452786 G C NAV3 Missense_Mutation p.D843H 0.30 deleterious(0) probably_damaging(0.993) TCGA-78-7539-01 12 78562540 78562540 T A NAV3 Silent p.S1625S 0.31 TCGA-78-7539-01 12 80655772 80655772 G C OTOGL Missense_Mutation p.G629A 0.48 deleterious(0.01) possibly_damaging(0.628) TCGA-78-7539-01 12 80658968 80658968 C T OTOGL Silent p.F725F 0.27 TCGA-78-7539-01 12 89917428 89917428 C G POC1B-GALNT4 Missense_Mutation p.R297T 0.20 tolerated(0.22) benign(0.302) TCGA-78-7539-01 12 96389479 96389479 G C HAL Silent p.L70L 0.43 TCGA-78-7539-01 12 989170 989170 A G WNK1 Silent p.P935P 0.21 TCGA-78-7539-01 13 102250648 102250648 G T ITGBL1 Missense_Mutation p.R338S 0.48 deleterious(0) possibly_damaging(0.837) TCGA-78-7539-01 13 103518331 103518331 G C ERCC5 Intron 0.53 TCGA-78-7539-01 13 32968918 32968918 C A BRCA2 Missense_Mutation p.H3117N 0.19 tolerated(0.17) possibly_damaging(0.568) TCGA-78-7539-01 13 51963515 51963515 C A INTS6 Missense_Mutation p.V227L 0.26 deleterious(0.01) benign(0.074) TCGA-78-7539-01 13 67802282 67802282 G C PCDH9 Silent p.L97L 0.21 TCGA-78-7539-01 13 73636220 73636220 C G KLF5 Missense_Mutation p.I161M 0.08 deleterious(0) probably_damaging(0.924) TCGA-78-7539-01 13 95055436 95055436 T A GPC6 Missense_Mutation p.C545S 0.17 tolerated(0.15) benign(0.007) TCGA-78-7539-01 14 107211210 107211210 C T IGHV3-73 Missense_Mutation p.G27R 0.08 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-78-7539-01 14 20665870 20665870 G C OR11G2 Missense_Mutation p.D126H 0.18 deleterious(0.02) benign(0.03) TCGA-78-7539-01 14 22280100 22280100 G C TRAV9-1 Missense_Mutation p.D97H 0.08 deleterious(0.03) benign(0.039) TCGA-78-7539-01 14 22392695 22392695 C G TRAV14DV4 Missense_Mutation p.S73C 0.21 TCGA-78-7539-01 14 23828666 23828666 G T EFS Missense_Mutation p.P341T 0.63 deleterious(0) possibly_damaging(0.78) TCGA-78-7539-01 14 23889251 23889251 C - MYH7 Frame_Shift_Del p.D1177Tfs*37 0.36 TCGA-78-7539-01 14 28733949 28733949 T A BNIP3P1 RNA 0.60 TCGA-78-7539-01 14 31597041 31597041 G C HECTD1 Nonsense_Mutation p.S1644* 0.19 TCGA-78-7539-01 14 32624150 32624150 T C ARHGAP5 Missense_Mutation p.I1502T 0.56 deleterious_low_confidence(0) unknown(0) TCGA-78-7539-01 14 37132112 37132112 C A PAX9 Missense_Mutation p.F5L 0.13 deleterious(0.04) probably_damaging(0.987) TCGA-78-7539-01 14 38060627 38060627 G A FOXA1 Silent p.A454A 0.09 TCGA-78-7539-01 14 45431916 45431916 C G FAM179B Missense_Mutation p.R98G 0.06 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-78-7539-01 14 51467560 51467560 T C TRIM9 Splice_Site p.X436_splice 0.11 TCGA-78-7539-01 14 55817174 55817174 G A FBXO34 Silent p.T22T 0.08 TCGA-78-7539-01 14 57272236 57272236 G T OTX2 5'UTR 0.40 TCGA-78-7539-01 14 68273273 68273273 C G ZFYVE26 Missense_Mutation p.E336Q 0.29 deleterious(0) probably_damaging(0.998) TCGA-78-7539-01 14 69345241 69345241 C T ACTN1 Splice_Site p.X788_splice 0.14 TCGA-78-7539-01 14 74010470 74010470 C T ACOT1 3'UTR 0.14 TCGA-78-7539-01 14 76906018 76906018 G T ESRRB Missense_Mutation p.D108Y 0.71 deleterious(0) probably_damaging(0.999) TCGA-78-7539-01 14 78161119 78161119 C G ALKBH1 Missense_Mutation p.E139D 0.18 tolerated(0.36) benign(0.047) TCGA-78-7539-01 14 80668725 80668725 C G DIO2 3'Flank 0.21 TCGA-78-7539-01 14 80669079 80669079 C A DIO2 Nonsense_Mutation p.E295* 0.62 TCGA-78-7539-01 14 93720129 93720129 C G BTBD7 Missense_Mutation p.R539T 0.15 deleterious(0) probably_damaging(0.975) TCGA-78-7539-01 15 100340366 100340366 G T DNM1P46 RNA 0.35 TCGA-78-7539-01 15 31776389 31776389 T A OTUD7A Missense_Mutation p.Q630L 0.29 deleterious(0.01) probably_damaging(0.966) TCGA-78-7539-01 15 32917434 32917434 A T ARHGAP11A Silent p.A235A 0.28 TCGA-78-7539-01 15 34018589 34018589 C A RYR3 Silent p.L2305L 0.33 TCGA-78-7539-01 15 40589781 40589781 C G PLCB2 Missense_Mutation p.E422Q 0.26 tolerated(0.09) probably_damaging(0.969) TCGA-78-7539-01 15 42434260 42434260 C T PLA2G4F Silent p.L824L 0.24 TCGA-78-7539-01 15 43701917 43701917 G C TP53BP1 Missense_Mutation p.F1776L 0.25 deleterious(0) possibly_damaging(0.452) TCGA-78-7539-01 15 48551426 48551426 C A SLC12A1 Missense_Mutation p.P691H 0.21 deleterious(0) probably_damaging(0.999) TCGA-78-7539-01 15 51975452 51975452 A T SCG3 Missense_Mutation p.D73V 0.39 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-78-7539-01 15 72554009 72554009 C G PARP6 Silent p.L145L 0.18 TCGA-78-7539-01 15 75687143 75687143 C T SIN3A Missense_Mutation p.E719K 0.13 deleterious(0) possibly_damaging(0.828) TCGA-78-7539-01 15 75968709 75968709 C A CSPG4 Missense_Mutation p.A2051S 0.18 tolerated(0.71) benign(0.044) TCGA-78-7539-01 15 78526821 78526821 C T ACSBG1 Missense_Mutation p.G8E 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.522) TCGA-78-7539-01 15 78921577 78921577 G T CHRNB4 Missense_Mutation p.A357D 0.43 tolerated(0.68) benign(0.309) TCGA-78-7539-01 15 86122855 86122855 C G AKAP13 Missense_Mutation p.S519C 0.13 tolerated_low_confidence(0.07) benign(0.01) TCGA-78-7539-01 15 90213226 90213226 C G PLIN1 Missense_Mutation p.D195H 0.35 tolerated(0.06) possibly_damaging(0.612) TCGA-78-7539-01 15 93007521 93007521 C A ST8SIA2 Missense_Mutation p.P345Q 0.34 probably_damaging(0.992) TCGA-78-7539-01 16 21709155 21709155 C T OTOA Missense_Mutation p.H267Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-78-7539-01 16 2481210 2481210 C G CCNF Missense_Mutation p.I32M 0.12 deleterious(0.01) possibly_damaging(0.595) TCGA-78-7539-01 16 27772844 27772844 A G KIAA0556 Missense_Mutation p.I1248V 0.32 tolerated(0.08) benign(0.098) TCGA-78-7539-01 16 31488304 31488304 C G TGFB1I1 Silent p.L364L 0.27 TCGA-78-7539-01 16 31539514 31539514 C G AHSP Missense_Mutation p.F18L 0.13 deleterious(0) possibly_damaging(0.88) TCGA-78-7539-01 16 532599 532599 G A RAB11FIP3 Silent p.E326E 0.14 TCGA-78-7539-01 16 56423102 56423102 A C AMFR Missense_Mutation p.F424C 0.15 deleterious(0) probably_damaging(0.988) TCGA-78-7539-01 16 58051280 58051280 C G USB1 Missense_Mutation p.F182L 0.07 tolerated(1) benign(0.002) TCGA-78-7539-01 16 61761011 61761011 C A CDH8 Missense_Mutation p.G508V 0.35 tolerated(0.06) probably_damaging(0.99) TCGA-78-7539-01 16 66969323 66969323 C G CES2 5'UTR 0.08 TCGA-78-7539-01 16 67281227 67281227 G C SLC9A5 5'Flank 0.44 TCGA-78-7539-01 16 70566441 70566441 C G SF3B3 Missense_Mutation p.F210L 0.10 deleterious(0.04) benign(0.12) TCGA-78-7539-01 16 72138418 72138418 G A DHX38 Missense_Mutation p.V682I 0.10 tolerated(0.09) probably_damaging(0.927) TCGA-78-7539-01 16 7645563 7645563 G A RBFOX1 Missense_Mutation p.V181I 0.16 deleterious(0.01) possibly_damaging(0.745) TCGA-78-7539-01 16 85936694 85936694 G T IRF8 Nonsense_Mutation p.G25* 0.32 TCGA-78-7539-01 16 85936695 85936695 G T IRF8 Missense_Mutation p.G25V 0.34 deleterious(0) probably_damaging(1) TCGA-78-7539-01 16 88688661 88688661 G C ZC3H18 Missense_Mutation p.R511T 0.14 deleterious_low_confidence(0) unknown(0) TCGA-78-7539-01 16 88926298 88926298 C G TRAPPC2L Intron 0.20 TCGA-78-7539-01 16 89180750 89180750 G A ACSF3 Silent p.L327L 0.22 TCGA-78-7539-01 16 904510 904510 C T LMF1 3'UTR 0.24 TCGA-78-7539-01 17 10265786 10265786 A T MYH13 Missense_Mutation p.M80K 0.22 deleterious(0) possibly_damaging(0.901) TCGA-78-7539-01 17 11757715 11757715 G T DNAH9 Missense_Mutation p.E3301D 0.45 benign(0.029) TCGA-78-7539-01 17 19705093 19705107 AAGGGGAAGGTGAGT - ULK2 In_Frame_Del p.Y475_P479del 0.52 TCGA-78-7539-01 17 20108581 20108581 G T SPECC1 Nonsense_Mutation p.E407* 0.21 TCGA-78-7539-01 17 20108588 20108588 C T SPECC1 Missense_Mutation p.T409I 0.20 deleterious(0) probably_damaging(0.999) TCGA-78-7539-01 17 27031619 27031619 C T PROCA1 Intron 0.17 TCGA-78-7539-01 17 30526552 30526552 A G RHOT1 Silent p.G361G 0.26 TCGA-78-7539-01 17 3592883 3592883 G A P2RX5 Missense_Mutation p.S219L 0.21 deleterious(0.01) possibly_damaging(0.507) TCGA-78-7539-01 17 3661042 3661042 G C ITGAE Missense_Mutation p.I326M 0.23 tolerated(0.07) probably_damaging(0.914) TCGA-78-7539-01 17 37563895 37563895 T C MED1 Missense_Mutation p.S1527G 0.29 tolerated_low_confidence(0.15) unknown(0) TCGA-78-7539-01 17 38556186 38556186 G A TOP2A Missense_Mutation p.S1045F 0.11 tolerated(0.2) possibly_damaging(0.691) TCGA-78-7539-01 17 40169443 40169443 C T NKIRAS2 5'UTR 0.12 TCGA-78-7539-01 17 41258529 41258529 G T BRCA1 Silent p.L52L 0.11 TCGA-78-7539-01 17 41891569 41891569 C G MPP3 Silent p.L390L 0.17 TCGA-78-7539-01 17 46128846 46128846 C T NFE2L1 Silent p.L122L 0.05 TCGA-78-7539-01 17 47241632 47241632 G A B4GALNT2 Missense_Mutation p.G377R 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-78-7539-01 17 4835987 4835987 G C GP1BA Missense_Mutation p.E30Q 0.20 deleterious(0.01) probably_damaging(0.932) TCGA-78-7539-01 17 48736659 48736659 G A ABCC3 Missense_Mutation p.E246K 0.12 tolerated(0.08) benign(0.027) TCGA-78-7539-01 17 55194219 55194219 A C AKAP1 Splice_Site p.X811_splice 0.13 TCGA-78-7539-01 17 56277623 56277623 C T EPX Silent p.T525T 0.46 TCGA-78-7539-01 17 59667862 59667862 T G NACA2 3'UTR 0.21 TCGA-78-7539-01 17 59958421 59958421 C T INTS2 Missense_Mutation p.R742Q 0.14 tolerated(0.49) benign(0.242) TCGA-78-7539-01 17 6329120 6329120 C G AIPL1 Missense_Mutation p.R272P 0.16 deleterious(0) probably_damaging(0.954) TCGA-78-7539-01 17 67129836 67129836 C G ABCA6 Missense_Mutation p.R246T 0.08 deleterious(0) probably_damaging(1) TCGA-78-7539-01 17 7126511 7126511 C G ACADVL Missense_Mutation p.I402M 0.05 deleterious(0) probably_damaging(0.998) TCGA-78-7539-01 17 72613371 72613371 G T CD300E Missense_Mutation p.Q92K 0.13 tolerated(0.09) benign(0.004) TCGA-78-7539-01 17 75478401 75478401 C G SEPT9 Missense_Mutation p.F299L 0.09 tolerated(0.38) possibly_damaging(0.836) TCGA-78-7539-01 17 77082418 77082418 C G ENGASE Nonsense_Mutation p.S740* 0.10 TCGA-78-7539-01 17 7794291 7794291 C G CHD3 Missense_Mutation p.L199V 0.24 possibly_damaging(0.558) TCGA-78-7539-01 17 79478006 79478006 C T ACTG1 Missense_Mutation p.D311N 0.15 deleterious_low_confidence(0.02) benign(0.014) TCGA-78-7539-01 18 11884329 11884329 C G MPPE1 3'UTR 0.10 TCGA-78-7539-01 18 21083527 21083527 C T C18orf8 5'UTR 0.45 TCGA-78-7539-01 18 21735667 21735667 G A CABYR Missense_Mutation p.E68K 0.24 deleterious(0.02) benign(0.093) TCGA-78-7539-01 18 31599332 31599332 G A NOL4 Silent p.L336L 0.27 TCGA-78-7539-01 18 34273246 34273246 G C FHOD3 Missense_Mutation p.R524T 0.14 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-78-7539-01 18 7044805 7044805 C A LAMA1 Missense_Mutation p.G298W 0.29 deleterious(0) probably_damaging(1) TCGA-78-7539-01 18 70451117 70451117 C T NETO1 Missense_Mutation p.E222K 0.21 tolerated(0.27) possibly_damaging(0.842) TCGA-78-7539-01 18 9570248 9570248 G A PPP4R1 Missense_Mutation p.P494S 0.36 tolerated(0.32) benign(0.011) TCGA-78-7539-01 18 9888081 9888081 T C TXNDC2 Silent p.D535D 0.31 TCGA-78-7539-01 19 10406060 10406060 G A ICAM5 Missense_Mutation p.G757R 0.21 deleterious_low_confidence(0.05) probably_damaging(0.999) TCGA-78-7539-01 19 10406079 10406079 G A ICAM5 Missense_Mutation p.G763E 0.20 tolerated(0.13) probably_damaging(0.999) TCGA-78-7539-01 19 10570163 10570163 A G PDE4A Missense_Mutation p.M397V 0.22 deleterious(0) benign(0.016) TCGA-78-7539-01 19 11657493 11657493 C T CNN1 Silent p.F63F 0.21 TCGA-78-7539-01 19 12575365 12575365 G A ZNF709 Silent p.F457F 0.24 TCGA-78-7539-01 19 12575934 12575934 G A ZNF709 Nonsense_Mutation p.Q268* 0.25 TCGA-78-7539-01 19 13264100 13264100 C T IER2 Silent p.L34L 0.33 TCGA-78-7539-01 19 14707757 14707757 A G CLEC17A Missense_Mutation p.Y172C 0.29 tolerated(0.24) benign(0.001) TCGA-78-7539-01 19 14876338 14876338 G A EMR2 Nonsense_Mutation p.Q276* 0.14 TCGA-78-7539-01 19 15052879 15052879 C A OR7C2 Missense_Mutation p.F193L 0.27 tolerated_low_confidence(0.67) benign(0.004) TCGA-78-7539-01 19 20727915 20727915 C T ZNF737 Missense_Mutation p.G365E 0.23 tolerated(0.09) probably_damaging(0.99) TCGA-78-7539-01 19 2337592 2337592 C T SPPL2B RNA 0.25 TCGA-78-7539-01 19 2337594 2337594 C G SPPL2B RNA 0.26 TCGA-78-7539-01 19 33359498 33359498 C G SLC7A9 5'UTR 0.10 TCGA-78-7539-01 19 38135626 38135626 C T ZFP30 Missense_Mutation p.M7I 0.20 tolerated(0.13) benign(0.001) TCGA-78-7539-01 19 39001185 39001185 G C RYR1 Missense_Mutation p.E2994Q 0.21 benign(0.041) TCGA-78-7539-01 19 4325283 4325283 G A STAP2 Silent p.V334V 0.50 TCGA-78-7539-01 19 43579684 43579684 G T PSG2 Missense_Mutation p.S177R 0.21 deleterious(0.01) possibly_damaging(0.624) TCGA-78-7539-01 19 44570525 44570525 G T ZNF223 Nonsense_Mutation p.G182* 0.28 TCGA-78-7539-01 19 44570526 44570526 G T ZNF223 Missense_Mutation p.G182V 0.28 deleterious(0.02) probably_damaging(0.969) TCGA-78-7539-01 19 44833574 44833574 G A ZNF112 Nonsense_Mutation p.Q252* 0.22 TCGA-78-7539-01 19 4523664 4523664 T G PLIN5 Missense_Mutation p.H423P 0.25 deleterious_low_confidence(0) benign(0.004) TCGA-78-7539-01 19 45493695 45493695 C G CLPTM1 Missense_Mutation p.S392C 0.19 deleterious(0) probably_damaging(0.996) TCGA-78-7539-01 19 45912504 45912504 G C CD3EAP Missense_Mutation p.K426N 0.33 deleterious(0) probably_damaging(0.941) TCGA-78-7539-01 19 46124873 46124873 C T EML2 Silent p.A489A 0.14 TCGA-78-7539-01 19 49950617 49950617 C T PIH1D1 Missense_Mutation p.A197T 0.19 tolerated(0.58) benign(0.004) TCGA-78-7539-01 19 50453287 50453287 C T SIGLEC11 Silent p.L679L 0.23 TCGA-78-7539-01 19 52869486 52869486 G T ZNF610 Missense_Mutation p.E285D 0.22 deleterious(0) possibly_damaging(0.685) TCGA-78-7539-01 19 53453010 53453010 C T ZNF816 3'UTR 0.22 TCGA-78-7539-01 19 55049204 55049204 C T KIR3DX1 Silent p.L323L 0.22 TCGA-78-7539-01 19 55349312 55349312 C A KIR2DS4 Missense_Mutation p.L118M 0.21 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-78-7539-01 19 55693037 55693037 G A PTPRH 3'UTR 0.20 TCGA-78-7539-01 19 57334186 57334186 C A PEG3 Missense_Mutation p.R167L 0.39 deleterious(0.04) benign(0.013) TCGA-78-7539-01 19 57888907 57888907 A G ZNF547 Missense_Mutation p.K188R 0.28 deleterious(0.01) benign(0.004) TCGA-78-7539-01 19 58563859 58563859 C T ZSCAN1 Missense_Mutation p.A156V 0.22 tolerated(0.08) benign(0.361) TCGA-78-7539-01 19 7964676 7964676 C G AC010336.1 Missense_Mutation p.Q197H 0.13 benign(0.398) TCGA-78-7539-01 19 9058315 9058315 C T MUC16 Missense_Mutation p.E9711K 0.22 unknown(0) TCGA-78-7539-01 19 9064992 9064992 G T MUC16 Missense_Mutation p.S7485Y 0.30 unknown(0) TCGA-78-7539-01 19 9324997 9324997 C T OR7D4 Missense_Mutation p.E173K 0.20 tolerated(0.13) benign(0.042) TCGA-78-7539-01 19 9763741 9763741 G C ZNF562 Missense_Mutation p.Q389E 0.21 tolerated(1) benign(0.009) TCGA-78-7539-01 19 9872820 9872820 C A ZNF846 Missense_Mutation p.S56I 0.21 deleterious(0.04) benign(0.106) TCGA-78-7539-01 1 10327466 10327466 G C KIF1B Missense_Mutation p.R153T 0.08 deleterious(0) probably_damaging(0.97) TCGA-78-7539-01 1 104160583 104160583 C A AMY2A Missense_Mutation p.P59Q 0.20 deleterious(0) probably_damaging(0.989) TCGA-78-7539-01 1 109812675 109812675 G A CELSR2 Missense_Mutation p.G2410S 0.20 tolerated(1) benign(0.024) TCGA-78-7539-01 1 110168300 110168300 C A AMPD2 Nonsense_Mutation p.S134* 0.11 TCGA-78-7539-01 1 1221509 1221509 G T SCNN1D Silent p.L254L 0.37 TCGA-78-7539-01 1 1290159 1290159 G C MXRA8 Silent p.R284R 0.13 TCGA-78-7539-01 1 144866706 144866706 C G PDE4DIP Missense_Mutation p.E1846Q 0.04 deleterious(0.02) probably_damaging(0.999) TCGA-78-7539-01 1 145109656 145109656 G T SEC22B RNA 0.04 TCGA-78-7539-01 1 151006440 151006440 C T PRUNE Silent p.D364D 0.06 TCGA-78-7539-01 1 151214946 151214946 C G PIP5K1A Missense_Mutation p.Q515E 0.07 tolerated(1) benign(0.103) TCGA-78-7539-01 1 151509902 151509902 C T CGN 3'UTR 0.28 TCGA-78-7539-01 1 152080014 152080014 C G TCHH Missense_Mutation p.Q1893H 0.04 benign(0.216) TCGA-78-7539-01 1 153642698 153642698 C G ILF2 Missense_Mutation p.R5T 0.09 deleterious(0.05) unknown(0) TCGA-78-7539-01 1 155210461 155210461 G C GBA Silent p.L25L 0.07 TCGA-78-7539-01 1 156264242 156264242 C G C1orf85 Missense_Mutation p.D165H 0.10 tolerated(0.06) benign(0.031) TCGA-78-7539-01 1 156640601 156640601 C T NES Missense_Mutation p.E1127K 0.10 deleterious(0.02) possibly_damaging(0.606) TCGA-78-7539-01 1 156909582 156909582 G A ARHGEF11 Missense_Mutation p.S1285F 0.07 tolerated_low_confidence(0.06) possibly_damaging(0.694) TCGA-78-7539-01 1 158151368 158151368 C T CD1D Missense_Mutation p.S62L 0.08 tolerated(0.41) benign(0.049) TCGA-78-7539-01 1 158548974 158548974 G T OR10X1 Missense_Mutation p.S239Y 0.52 deleterious(0.02) probably_damaging(1) TCGA-78-7539-01 1 158576567 158576567 C T OR10Z1 Silent p.F113F 0.11 TCGA-78-7539-01 1 159273941 159273941 G C FCER1A Missense_Mutation p.E100D 0.05 tolerated(0.35) benign(0) TCGA-78-7539-01 1 15987288 15987288 G C RSC1A1 Missense_Mutation p.D309H 0.16 deleterious(0.01) probably_damaging(0.942) TCGA-78-7539-01 1 159921487 159921487 C G SLAMF9 Missense_Mutation p.L278F 0.10 deleterious(0) probably_damaging(0.996) TCGA-78-7539-01 1 159922201 159922201 C A SLAMF9 Missense_Mutation p.R172L 0.52 tolerated(0.76) benign(0.001) TCGA-78-7539-01 1 161140875 161140875 G C PPOX Missense_Mutation p.G448A 0.04 deleterious(0.01) probably_damaging(1) TCGA-78-7539-01 1 161334856 161334856 G C C1orf192 Missense_Mutation p.P145A 0.12 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-78-7539-01 1 169394108 169394108 C G CCDC181 Missense_Mutation p.E20Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-78-7539-01 1 169581480 169581480 C T SELP Nonsense_Mutation p.W312* 0.12 TCGA-78-7539-01 1 171544252 171544252 A G PRRC2C Missense_Mutation p.T2312A 0.07 probably_damaging(0.987) TCGA-78-7539-01 1 171544259 171544259 C G PRRC2C Nonsense_Mutation p.S2314* 0.08 TCGA-78-7539-01 1 173526632 173526632 C A SLC9C2 Missense_Mutation p.L354F 0.12 deleterious(0.03) benign(0.055) TCGA-78-7539-01 1 174418080 174418080 G C GPR52 Silent p.L277L 0.11 TCGA-78-7539-01 1 175046812 175046812 C T TNN Silent p.F86F 0.15 TCGA-78-7539-01 1 179965956 179965956 G A CEP350 Missense_Mutation p.E222K 0.21 benign(0.371) TCGA-78-7539-01 1 182850485 182850485 A T DHX9 Missense_Mutation p.H904L 0.05 deleterious(0.01) probably_damaging(0.978) TCGA-78-7539-01 1 196395074 196395074 C A KCNT2 Missense_Mutation p.Q343H 0.18 deleterious(0.02) benign(0.166) TCGA-78-7539-01 1 196881996 196881996 C G CFHR4 Missense_Mutation p.S374C 0.13 tolerated(0.13) possibly_damaging(0.7) TCGA-78-7539-01 1 200965360 200965360 C T KIF21B Silent p.K747K 0.06 TCGA-78-7539-01 1 201383732 201383732 C T TNNI1 Missense_Mutation p.E35K 0.21 tolerated(0.56) benign(0.035) TCGA-78-7539-01 1 203682343 203682343 G A ATP2B4 Silent p.A754A 0.11 TCGA-78-7539-01 1 203740522 203740522 T C LAX1 Missense_Mutation p.V76A 0.07 tolerated(0.54) benign(0.004) TCGA-78-7539-01 1 206628307 206628307 G A SRGAP2 Missense_Mutation p.R729K 0.17 tolerated(0.67) benign(0.008) TCGA-78-7539-01 1 207198231 207198231 C - C1orf116 Splice_Site p.X95_splice 0.23 TCGA-78-7539-01 1 210267810 210267810 A T SYT14 Missense_Mutation p.N241Y 0.19 tolerated(0.05) possibly_damaging(0.491) TCGA-78-7539-01 1 211192440 211192440 G A KCNH1 Silent p.V239V 0.14 TCGA-78-7539-01 1 217604459 217604459 T A GPATCH2 3'UTR 0.36 TCGA-78-7539-01 1 220101607 220101607 T C SLC30A10 Missense_Mutation p.Y59C 0.33 tolerated(0.15) possibly_damaging(0.84) TCGA-78-7539-01 1 22205522 22205522 C A HSPG2 Silent p.R812R 0.54 TCGA-78-7539-01 1 228560439 228560439 C T OBSCN Silent p.F8277F 0.10 TCGA-78-7539-01 1 229773396 229773396 C G URB2 Silent p.L1012L 0.15 TCGA-78-7539-01 1 237057700 237057700 C G MTR Nonsense_Mutation p.S1083* 0.10 TCGA-78-7539-01 1 237660045 237660045 C G RYR2 Silent p.L732L 0.13 TCGA-78-7539-01 1 237711840 237711840 G T RYR2 Missense_Mutation p.V1006L 0.27 possibly_damaging(0.895) TCGA-78-7539-01 1 237801676 237801676 G T RYR2 Missense_Mutation p.G2271V 0.25 probably_damaging(0.992) TCGA-78-7539-01 1 2436043 2436043 C A PLCH2 3'UTR 0.30 TCGA-78-7539-01 1 247768923 247768923 C T OR2G3 Silent p.F12F 0.14 TCGA-78-7539-01 1 247979009 247979009 G T OR14A16 Missense_Mutation p.T8N 0.08 deleterious(0.05) benign(0.049) TCGA-78-7539-01 1 248458293 248458293 G A OR2T12 Silent p.A196A 0.11 TCGA-78-7539-01 1 26514740 26514740 C G CNKSR1 Silent p.L490L 0.11 TCGA-78-7539-01 1 27942117 27942117 C T FGR Nonsense_Mutation p.W282* 0.19 TCGA-78-7539-01 1 28330898 28330898 G - EYA3 Frame_Shift_Del p.I315Sfs*21 0.16 TCGA-78-7539-01 1 29639188 29639188 C G PTPRU Missense_Mutation p.P1076R 0.09 deleterious(0) probably_damaging(0.931) TCGA-78-7539-01 1 3544203 3544204 - C TPRG1L Frame_Shift_Ins p.S205Ifs*52 0.20 TCGA-78-7539-01 1 36785389 36785389 G A SH3D21 Silent p.K375K 0.17 TCGA-78-7539-01 1 40307302 40307302 C G TRIT1 3'UTR 0.17 TCGA-78-7539-01 1 42880471 42880471 A G RIMKLA Silent p.G334G 0.24 TCGA-78-7539-01 1 43906216 43906216 C G SZT2 Missense_Mutation p.P2378A 0.24 deleterious(0.05) benign(0.003) TCGA-78-7539-01 1 46736385 46736385 A T RAD54L Missense_Mutation p.D366V 0.16 deleterious(0) probably_damaging(0.97) TCGA-78-7539-01 1 59004832 59004832 A G OMA1 Silent p.H45H 0.35 TCGA-78-7539-01 1 59247894 59247894 T - JUN Frame_Shift_Del p.V284* 0.34 TCGA-78-7539-01 1 64021097 64021097 G A EFCAB7 Silent p.R375R 0.26 TCGA-78-7539-01 1 71873215 71873215 C T NEGR1 Missense_Mutation p.D327N 0.23 tolerated(0.47) benign(0) TCGA-78-7539-01 1 75107038 75107038 C A C1orf173 Nonsense_Mutation p.G141* 0.21 TCGA-78-7539-01 1 79115896 79115896 C T IFI44 Missense_Mutation p.R6C 0.24 tolerated(0.14) benign(0.018) TCGA-78-7539-01 1 84700929 84700929 G C PRKACB Missense_Mutation p.E380Q 0.23 deleterious(0.01) benign(0.365) TCGA-78-7539-01 1 92479760 92479760 C T BRDT Intron 0.17 TCGA-78-7539-01 1 978663 978663 G C AGRN Missense_Mutation p.A477P 0.21 deleterious(0) possibly_damaging(0.665) TCGA-78-7539-01 20 13550200 13550200 T G TASP1 Silent p.A174A 0.23 TCGA-78-7539-01 20 23729677 23729677 G A CST1 Silent p.F106F 0.45 TCGA-78-7539-01 20 25457142 25457142 T A NINL Missense_Mutation p.S929C 0.20 tolerated(0.1) benign(0.173) TCGA-78-7539-01 20 25477351 25477351 C G NINL Missense_Mutation p.E420Q 0.14 deleterious(0) probably_damaging(0.978) TCGA-78-7539-01 20 30345357 30345357 A T TPX2 Silent p.G26G 0.38 TCGA-78-7539-01 20 33875148 33875148 G T FAM83C Silent p.P478P 0.27 TCGA-78-7539-01 20 34207574 34207574 G A SPAG4 Missense_Mutation p.R328Q 0.23 deleterious(0.01) possibly_damaging(0.905) TCGA-78-7539-01 20 39832861 39832861 G A ZHX3 Silent p.F232F 0.15 TCGA-78-7539-01 20 5170746 5170746 A G CDS2 Splice_Site p.X402_splice 0.43 TCGA-78-7539-01 20 57415491 57415491 G A RP4-806M20.3 5'Flank 0.12 TCGA-78-7539-01 20 61048574 61048574 A C GATA5 Missense_Mutation p.L195R 0.33 deleterious(0) probably_damaging(0.998) TCGA-78-7539-01 20 62178612 62178612 C T SRMS Missense_Mutation p.E69K 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-78-7539-01 21 10863005 10863005 G C IGHV1OR21-1 Missense_Mutation p.E101Q 0.05 tolerated(0.8) benign(0.149) TCGA-78-7539-01 21 10906930 10906930 C A TPTE Missense_Mutation p.S544I 0.27 tolerated_low_confidence(0.08) benign(0.011) TCGA-78-7539-01 21 10921931 10921931 T A TPTE Intron 0.15 TCGA-78-7539-01 21 30426561 30426561 G C USP16 3'UTR 0.12 TCGA-78-7539-01 21 31691715 31691715 C A KRTAP26-1 3'UTR 0.50 TCGA-78-7539-01 21 34922480 34922480 G A SON Missense_Mutation p.E315K 0.12 benign(0.292) TCGA-78-7539-01 21 38444733 38444733 C T PIGP Splice_Site p.X52_splice 0.16 TCGA-78-7539-01 21 41725430 41725430 T A DSCAM Missense_Mutation p.Y299F 0.14 tolerated(1) benign(0.008) TCGA-78-7539-01 21 47545457 47545457 C T COL6A2 Missense_Mutation p.T632I 0.48 deleterious(0) probably_damaging(0.944) TCGA-78-7539-01 22 16449508 16449508 G T OR11H1 Missense_Mutation p.N99K 0.32 deleterious(0) possibly_damaging(0.786) TCGA-78-7539-01 22 19961246 19961246 G C ARVCF Missense_Mutation p.S720C 0.06 deleterious(0.05) probably_damaging(0.987) TCGA-78-7539-01 22 24226953 24226953 G A SLC2A11 Missense_Mutation p.E477K 0.24 deleterious(0) possibly_damaging(0.676) TCGA-78-7539-01 22 29837589 29837589 C A RFPL1 Silent p.L144L 0.19 TCGA-78-7539-01 22 30740986 30740986 T C SF3A1 Missense_Mutation p.D196G 0.47 deleterious(0) benign(0.104) TCGA-78-7539-01 22 38201558 38201558 G C H1F0 Missense_Mutation p.E3Q 0.18 deleterious_low_confidence(0.05) benign(0.216) TCGA-78-7539-01 22 38211274 38211274 G T GCAT Missense_Mutation p.G266W 0.14 deleterious(0) probably_damaging(1) TCGA-78-7539-01 22 40719291 40719291 A G TNRC6B 3'UTR 0.07 TCGA-78-7539-01 22 42321413 42321413 A G TNFRSF13C Silent p.T171T 0.47 TCGA-78-7539-01 22 42418274 42418274 G C WBP2NL Missense_Mutation p.R143T 0.19 tolerated(0.21) benign(0.101) TCGA-78-7539-01 22 42991591 42991591 C T POLDIP3 Silent p.K281K 0.11 TCGA-78-7539-01 22 43287087 43287087 C T PACSIN2 Missense_Mutation p.D107N 0.22 deleterious(0.02) benign(0.023) TCGA-78-7539-01 22 46655967 46655967 G A PKDREJ Missense_Mutation p.R1085C 0.18 deleterious(0.03) possibly_damaging(0.871) TCGA-78-7539-01 22 46787649 46787649 G C CELSR1 Missense_Mutation p.S2010C 0.15 deleterious(0) probably_damaging(0.981) TCGA-78-7539-01 22 46806436 46806436 G C CELSR1 Missense_Mutation p.L1598V 0.26 deleterious(0) probably_damaging(0.999) TCGA-78-7539-01 22 50591507 50591507 G A MOV10L1 Missense_Mutation p.E976K 0.21 tolerated(0.26) benign(0.005) TCGA-78-7539-01 2 109382771 109382771 G T RANBP2 Missense_Mutation p.D1926Y 0.31 deleterious(0.05) benign(0.17) TCGA-78-7539-01 2 113331367 113331367 G T POLR1B Missense_Mutation p.G834W 0.29 deleterious(0) probably_damaging(0.98) TCGA-78-7539-01 2 130832872 130832872 C T POTEF Missense_Mutation p.D725N 0.14 tolerated_low_confidence(0.11) probably_damaging(0.93) TCGA-78-7539-01 2 130930378 130930378 C A SMPD4 Missense_Mutation p.G185C 0.46 deleterious(0.01) probably_damaging(0.991) TCGA-78-7539-01 2 152500536 152500536 C T NEB Silent p.Q2584Q 0.32 TCGA-78-7539-01 2 155711819 155711819 C T KCNJ3 Silent p.F500F 0.29 TCGA-78-7539-01 2 160112869 160112869 G A WDSUB1 Nonsense_Mutation p.Q324* 0.14 TCGA-78-7539-01 2 160901621 160901621 G C PLA2R1 Missense_Mutation p.Q53E 0.11 tolerated(0.17) benign(0.313) TCGA-78-7539-01 2 179424766 179424766 C A TTN Missense_Mutation p.W28698L 0.25 TCGA-78-7539-01 2 179456184 179456184 C A TTN Missense_Mutation p.V20090L 0.31 TCGA-78-7539-01 2 179464429 179464429 G C TTN Silent p.L18733L 0.19 TCGA-78-7539-01 2 179718180 179718180 G C CCDC141 Missense_Mutation p.Q1078E 0.13 tolerated(0.22) benign(0.023) TCGA-78-7539-01 2 179718348 179718348 G C CCDC141 Missense_Mutation p.H1022D 0.23 tolerated(0.14) benign(0.008) TCGA-78-7539-01 2 183791550 183791550 T C NCKAP1 Silent p.L1094L 0.33 TCGA-78-7539-01 2 183791552 183791552 G A NCKAP1 Silent p.L1094L 0.34 TCGA-78-7539-01 2 18736478 18736478 C T RDH14 Silent p.V330V 0.15 TCGA-78-7539-01 2 190611111 190611111 G A ANKAR Missense_Mutation p.E1355K 0.07 tolerated_low_confidence(0.36) benign(0.007) TCGA-78-7539-01 2 197105193 197105193 G A HECW2 Silent p.V1248V 0.39 TCGA-78-7539-01 2 201760030 201760030 C T NIF3L1 Nonsense_Mutation p.Q215* 0.29 TCGA-78-7539-01 2 202352615 202352615 T A ALS2CR11 Missense_Mutation p.D1728V 0.12 deleterious(0) probably_damaging(0.992) TCGA-78-7539-01 2 204000719 204000719 C G NBEAL1 Missense_Mutation p.S1349C 0.19 deleterious(0.01) possibly_damaging(0.572) TCGA-78-7539-01 2 207173357 207173357 G A ZDBF2 Missense_Mutation p.D1369N 0.11 deleterious(0.04) possibly_damaging(0.539) TCGA-78-7539-01 2 21225915 21225915 C T APOB Missense_Mutation p.D4127N 0.08 benign(0.007) TCGA-78-7539-01 2 219688556 219688556 C A PRKAG3 Missense_Mutation p.V467L 0.38 tolerated(0.1) possibly_damaging(0.665) TCGA-78-7539-01 2 228756020 228756020 C T DAW1 Missense_Mutation p.S103L 0.24 tolerated(0.16) benign(0.273) TCGA-78-7539-01 2 234104107 234104107 C T INPP5D Missense_Mutation p.H875Y 0.29 tolerated(0.22) benign(0.139) TCGA-78-7539-01 2 242283227 242283227 G T SEPT2 Missense_Mutation p.V253F 0.04 tolerated(0.06) probably_damaging(0.922) TCGA-78-7539-01 2 242438131 242438131 G C STK25 Silent p.L280L 0.21 TCGA-78-7539-01 2 26414110 26414110 G T HADHA 3'UTR 0.19 TCGA-78-7539-01 2 26750699 26750699 C A OTOF Splice_Site p.X76_splice 0.10 TCGA-78-7539-01 2 3605786 3605786 G C RNASEH1 Missense_Mutation p.S22C 0.18 tolerated_low_confidence(0.54) benign(0.001) TCGA-78-7539-01 2 44428516 44428516 G C PPM1B Missense_Mutation p.D60H 0.20 deleterious(0.02) probably_damaging(1) TCGA-78-7539-01 2 47136169 47136169 C G MCFD2 Missense_Mutation p.D48H 0.17 deleterious(0) possibly_damaging(0.855) TCGA-78-7539-01 2 49190117 49190117 G A FSHR Missense_Mutation p.H615Y 0.12 tolerated(1) benign(0) TCGA-78-7539-01 2 50574003 50574003 C A NRXN1 Intron 0.42 TCGA-78-7539-01 2 54587462 54587462 G C C2orf73 Missense_Mutation p.E209D 0.11 deleterious(0.04) benign(0.226) TCGA-78-7539-01 2 61522325 61522325 C G USP34 Missense_Mutation p.R1452T 0.21 tolerated(0.22) benign(0.04) TCGA-78-7539-01 2 71160154 71160154 G A VAX2 Silent p.P231P 0.30 TCGA-78-7539-01 2 84518384 84518384 G C FUNDC2P2 RNA 0.30 TCGA-78-7539-01 2 86849937 86849937 T C RNF103-CHMP3 Intron 0.22 TCGA-78-7539-01 3 12046037 12046037 C T SYN2 RNA 0.38 TCGA-78-7539-01 3 12531405 12531405 G C TSEN2 Missense_Mutation p.E36Q 0.16 tolerated(0.05) possibly_damaging(0.638) TCGA-78-7539-01 3 157160592 157160592 G C PTX3 Missense_Mutation p.D324H 0.10 deleterious(0) probably_damaging(0.982) TCGA-78-7539-01 3 164793764 164793764 G A SI Silent p.L13L 0.13 TCGA-78-7539-01 3 30713446 30713446 G C TGFBR2 Missense_Mutation p.E282D 0.12 tolerated(0.35) benign(0.366) TCGA-78-7539-01 3 37053541 37053541 G A MLH1 Missense_Mutation p.A210T 0.21 tolerated(0.11) benign(0.18) TCGA-78-7539-01 3 37190483 37190483 C G LRRFIP2 5'UTR 0.21 TCGA-78-7539-01 3 37367527 37367527 C T GOLGA4 Nonsense_Mutation p.Q1406* 0.24 TCGA-78-7539-01 3 38537932 38537932 T C EXOG Missense_Mutation p.V25A 0.43 tolerated(0.48) benign(0.153) TCGA-78-7539-01 3 46574379 46574379 C G LRRC2 Missense_Mutation p.E171Q 0.19 tolerated(0.09) probably_damaging(0.978) TCGA-78-7539-01 3 48282614 48282614 C T ZNF589 5'UTR 0.33 TCGA-78-7539-01 3 48607742 48607742 C A COL7A1 Missense_Mutation p.G2469V 0.38 probably_damaging(0.99) TCGA-78-7539-01 3 49759191 49759191 G A GMPPB Silent p.I386I 0.15 TCGA-78-7539-01 3 52172224 52172224 C G POC1A Silent p.L258L 0.15 TCGA-78-7539-01 3 52398911 52398911 C G DNAH1 Silent p.L1798L 0.18 TCGA-78-7539-01 4 110222978 110222978 G C COL25A1 Silent p.L66L 0.06 TCGA-78-7539-01 4 11400759 11400759 C A HS3ST1 Nonsense_Mutation p.E291* 0.28 TCGA-78-7539-01 4 114278095 114278095 G T ANK2 Missense_Mutation p.G2774V 0.12 possibly_damaging(0.599) TCGA-78-7539-01 4 144467174 144467174 G C SMARCA5 Missense_Mutation p.E832Q 0.25 tolerated(0.42) benign(0.014) TCGA-78-7539-01 4 145061855 145061855 G T GYPA 5'UTR 0.29 TCGA-78-7539-01 4 155312413 155312413 C G DCHS2 Missense_Mutation p.D13H 0.15 deleterious_low_confidence(0.02) benign(0.069) TCGA-78-7539-01 4 158091631 158091631 G A GLRB Silent p.L415L 0.54 TCGA-78-7539-01 4 160244634 160244634 C T RAPGEF2 Silent p.L177L 0.06 TCGA-78-7539-01 4 166405735 166405735 G T CPE Missense_Mutation p.A318S 0.26 tolerated(0.89) probably_damaging(0.998) TCGA-78-7539-01 4 169433199 169433199 A G PALLD Missense_Mutation p.I182V 0.25 deleterious(0.01) probably_damaging(0.989) TCGA-78-7539-01 4 170912946 170912946 C T MFAP3L Silent p.V271V 0.33 TCGA-78-7539-01 4 177142365 177142365 G A ASB5 Missense_Mutation p.P204L 0.50 deleterious(0.01) possibly_damaging(0.515) TCGA-78-7539-01 4 20530616 20530616 G A SLIT2 Missense_Mutation p.D503N 0.18 deleterious(0.02) probably_damaging(0.996) TCGA-78-7539-01 4 20533668 20533668 C T SLIT2 Nonsense_Mutation p.Q559* 0.30 TCGA-78-7539-01 4 22389690 22389690 C A GPR125 Missense_Mutation p.V1202L 0.31 tolerated(0.56) benign(0.031) TCGA-78-7539-01 4 2698087 2698087 C T FAM193A Intron 0.19 TCGA-78-7539-01 4 2916722 2916722 G C ADD1 Missense_Mutation p.E604Q 0.17 tolerated(0.08) possibly_damaging(0.826) TCGA-78-7539-01 4 56236183 56236183 C G SRD5A3 Silent p.L294L 0.05 TCGA-78-7539-01 4 62845391 62845391 G T LPHN3 Silent p.G904G 0.44 TCGA-78-7539-01 4 69362534 69362534 C A TMPRSS11E 3'UTR 0.18 TCGA-78-7539-01 4 70156375 70156375 C A UGT2B28 Missense_Mutation p.H386N 0.07 deleterious(0.01) probably_damaging(0.955) TCGA-78-7539-01 4 70707720 70707720 C T SULT1E1 Missense_Mutation p.E293K 0.11 deleterious(0.03) benign(0.009) TCGA-78-7539-01 4 71020066 71020066 G T C4orf40 5'UTR 0.65 TCGA-78-7539-01 4 71690060 71690060 C T GRSF1 Silent p.L473L 0.17 TCGA-78-7539-01 4 77292610 77292610 T A CCDC158 Missense_Mutation p.Q370L 0.77 deleterious(0) benign(0.215) TCGA-78-7539-01 4 79831813 79831813 C G BMP2K Silent p.G704G 0.56 TCGA-78-7539-01 4 95445019 95445019 C G PDLIM5 Missense_Mutation p.L81V 0.14 deleterious(0) possibly_damaging(0.764) TCGA-78-7539-01 5 102537343 102537343 G T PPIP5K2 3'UTR 0.43 TCGA-78-7539-01 5 125896781 125896781 T C ALDH7A1 Missense_Mutation p.I303V 0.14 tolerated(0.09) possibly_damaging(0.568) TCGA-78-7539-01 5 126993409 126993409 G C CTXN3 Missense_Mutation p.D66H 0.11 deleterious(0) probably_damaging(0.966) TCGA-78-7539-01 5 131630476 131630476 C G SLC22A4 Missense_Mutation p.A56G 0.22 tolerated(0.22) benign(0.157) TCGA-78-7539-01 5 135416240 135416241 - AG VTRNA2-1 RNA 0.14 TCGA-78-7539-01 5 140078197 140078197 C G HARS2 3'UTR 0.18 TCGA-78-7539-01 5 140175984 140175984 G T PCDHA2 Missense_Mutation p.A479S 0.36 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-78-7539-01 5 140203212 140203212 C T PCDHA5 Missense_Mutation p.R618C 0.37 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-78-7539-01 5 140223137 140223137 C T PCDHA8 Missense_Mutation p.A744V 0.11 deleterious_low_confidence(0.02) benign(0.181) TCGA-78-7539-01 5 140736861 140736861 C T PCDHGA4 Silent p.A698A 0.37 TCGA-78-7539-01 5 140751042 140751042 G T PCDHGB3 Nonsense_Mutation p.E361* 0.35 TCGA-78-7539-01 5 140764134 140764134 T C PCDHGA7 Silent p.N556N 0.23 TCGA-78-7539-01 5 142779799 142779799 C T NR3C1 Silent p.G202G 0.18 TCGA-78-7539-01 5 14291313 14291313 G A TRIO Silent p.R343R 0.27 TCGA-78-7539-01 5 146997621 146997621 G C JAKMIP2 Missense_Mutation p.I733M 0.39 tolerated(0.22) possibly_damaging(0.592) TCGA-78-7539-01 5 150028936 150028936 C T SYNPO Silent p.L611L 0.15 TCGA-78-7539-01 5 167993025 167993025 C A PANK3 Missense_Mutation p.G210W 0.36 deleterious(0) probably_damaging(1) TCGA-78-7539-01 5 168233492 168233492 C G SLIT3 Missense_Mutation p.L298F 0.20 deleterious(0.02) probably_damaging(1) TCGA-78-7539-01 5 176939118 176939118 C G DDX41 Missense_Mutation p.E571Q 0.16 tolerated(0.15) benign(0.276) TCGA-78-7539-01 5 24509699 24509699 G T CDH10 Missense_Mutation p.P411Q 0.13 deleterious(0.01) probably_damaging(0.987) TCGA-78-7539-01 5 35037091 35037091 C G AGXT2 Missense_Mutation p.E148Q 0.10 deleterious(0.04) possibly_damaging(0.589) TCGA-78-7539-01 5 35065601 35065601 C T PRLR Missense_Mutation p.D487N 0.13 tolerated(0.28) benign(0.086) TCGA-78-7539-01 5 38510737 38510737 G C LIFR Missense_Mutation p.Q274E 0.15 tolerated(0.64) benign(0.001) TCGA-78-7539-01 5 40692198 40692198 C T PTGER4 Silent p.L395L 0.31 TCGA-78-7539-01 5 40765169 40765169 C G PRKAA1 Missense_Mutation p.L346F 0.11 tolerated(0.07) probably_damaging(1) TCGA-78-7539-01 5 42718993 42718993 G A GHR Missense_Mutation p.E462K 0.18 tolerated(0.61) benign(0.04) TCGA-78-7539-01 5 44809664 44809664 C T MRPS30 Silent p.L200L 0.14 TCGA-78-7539-01 5 52362956 52362956 G C ITGA2 Missense_Mutation p.S651T 0.16 tolerated(0.07) benign(0.052) TCGA-78-7539-01 5 5473764 5473764 G A KIAA0947 Missense_Mutation p.G2106S 0.15 deleterious(0) probably_damaging(1) TCGA-78-7539-01 5 61651013 61651013 G A KIF2A Missense_Mutation p.E196K 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-78-7539-01 5 80171579 80171579 C G MSH3 Silent p.L1104L 0.17 TCGA-78-7539-01 5 82786003 82786003 C A VCAN Missense_Mutation p.P53T 0.34 deleterious(0) possibly_damaging(0.794) TCGA-78-7539-01 5 96093323 96093323 G A CAST Missense_Mutation p.E559K 0.18 tolerated(0.47) benign(0.005) TCGA-78-7539-01 6 100838702 100838702 G T SIM1 Silent p.P612P 0.37 TCGA-78-7539-01 6 100841691 100841691 C T SIM1 Silent p.T414T 0.32 TCGA-78-7539-01 6 111896952 111896952 C G TRAF3IP2 Silent p.L365L 0.16 TCGA-78-7539-01 6 117632184 117632184 T A ROS1 Missense_Mutation p.R2078W 0.43 deleterious(0) probably_damaging(0.998) TCGA-78-7539-01 6 12123906 12123906 C G HIVEP1 Nonsense_Mutation p.S1293* 0.09 TCGA-78-7539-01 6 135511330 135511330 G T MYB Silent p.G124G 0.06 TCGA-78-7539-01 6 136977581 136977581 A G MAP3K5 Missense_Mutation p.V515A 0.26 deleterious(0) probably_damaging(0.965) TCGA-78-7539-01 6 139488428 139488428 G A HECA Missense_Mutation p.E427K 0.19 tolerated(0.14) probably_damaging(0.991) TCGA-78-7539-01 6 146755353 146755353 C A GRM1 Silent p.L1002L 0.39 TCGA-78-7539-01 6 150048227 150048227 C G NUP43 Missense_Mutation p.E341Q 0.13 deleterious(0.01) possibly_damaging(0.733) TCGA-78-7539-01 6 151907150 151907150 C G CCDC170 Missense_Mutation p.Q407E 0.23 deleterious(0.05) benign(0.068) TCGA-78-7539-01 6 152668219 152668219 G A SYNE1 Missense_Mutation p.S4018L 0.13 possibly_damaging(0.835) TCGA-78-7539-01 6 152763354 152763354 C G SYNE1 Missense_Mutation p.K1288N 0.12 possibly_damaging(0.613) TCGA-78-7539-01 6 153296150 153296150 C G FBXO5 Missense_Mutation p.R237T 0.06 deleterious(0.01) possibly_damaging(0.859) TCGA-78-7539-01 6 15517468 15517468 G A JARID2 Missense_Mutation p.R1176Q 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-78-7539-01 6 158914615 158914615 G C TULP4 Missense_Mutation p.E548Q 0.14 deleterious(0.01) benign(0.25) TCGA-78-7539-01 6 160819028 160819028 C G SLC22A3 Silent p.V149V 0.13 TCGA-78-7539-01 6 163235198 163235198 C A PACRG Missense_Mutation p.A59E 0.21 deleterious(0) possibly_damaging(0.811) TCGA-78-7539-01 6 168468049 168468049 C G FRMD1 Missense_Mutation p.E128Q 0.14 tolerated(0.27) benign(0.002) TCGA-78-7539-01 6 168927058 168927058 A T SMOC2 Missense_Mutation p.T97S 0.32 tolerated(0.09) possibly_damaging(0.661) TCGA-78-7539-01 6 26199818 26199818 C T HIST1H2BF Missense_Mutation p.P11L 0.34 deleterious_low_confidence(0.03) unknown(0) TCGA-78-7539-01 6 28500165 28500165 G T GPX5 Nonsense_Mutation p.E143* 0.49 TCGA-78-7539-01 6 29342268 29342268 G C OR12D3 Missense_Mutation p.S266C 0.10 deleterious(0.01) possibly_damaging(0.775) TCGA-78-7539-01 6 30880223 30880223 C T GTF2H4 Silent p.I359I 0.30 TCGA-78-7539-01 6 31671053 31671053 C T ABHD16A Silent p.A2A 0.12 TCGA-78-7539-01 6 31902163 31902163 C G C2 Intron 0.09 TCGA-78-7539-01 6 33164323 33164323 C G RXRB Missense_Mutation p.G294A 0.14 tolerated(0.1) benign(0.022) TCGA-78-7539-01 6 33373380 33373380 G A KIFC1 Missense_Mutation p.R503Q 0.18 tolerated(0.11) possibly_damaging(0.532) TCGA-78-7539-01 6 33382112 33382112 C G PHF1 Missense_Mutation p.S282C 0.05 deleterious(0) possibly_damaging(0.848) TCGA-78-7539-01 6 348125 348125 G A DUSP22 Missense_Mutation p.V96M 0.10 deleterious(0) probably_damaging(0.993) TCGA-78-7539-01 6 350744 350744 A - DUSP22 Intron 0.15 TCGA-78-7539-01 6 36099123 36099123 C T MAPK13 Silent p.F65F 0.14 TCGA-78-7539-01 6 36867275 36867275 G T C6orf89 Missense_Mutation p.D26Y 0.16 deleterious(0) probably_damaging(0.992) TCGA-78-7539-01 6 37622594 37622594 G A MDGA1 Missense_Mutation p.R232W 0.27 deleterious(0) possibly_damaging(0.659) TCGA-78-7539-01 6 38545402 38545402 T A BTBD9 Missense_Mutation p.K376N 0.17 tolerated(0.35) unknown(0) TCGA-78-7539-01 6 43019473 43019473 C G CUL7 Silent p.L287L 0.07 TCGA-78-7539-01 6 43174229 43174229 C T CUL9 Silent p.F1731F 0.05 TCGA-78-7539-01 6 43411937 43411937 G T ABCC10 Missense_Mutation p.E845D 0.29 tolerated(0.18) benign(0.004) TCGA-78-7539-01 6 44900479 44900479 C G SUPT3H Missense_Mutation p.E286Q 0.12 tolerated(0.06) possibly_damaging(0.502) TCGA-78-7539-01 6 46851846 46851846 C A GPR116 Missense_Mutation p.C164F 0.31 deleterious(0) probably_damaging(0.983) TCGA-78-7539-01 6 55638877 55638877 G A BMP5 Nonsense_Mutation p.Q333* 0.13 TCGA-78-7539-01 6 70935635 70935635 C A COL9A1 Missense_Mutation p.G861C 0.41 probably_damaging(0.999) TCGA-78-7539-01 6 70964208 70964208 G A COL9A1 Missense_Mutation p.P564S 0.22 probably_damaging(0.998) TCGA-78-7539-01 6 75804895 75804895 C A COL12A1 Nonsense_Mutation p.G2860* 0.36 TCGA-78-7539-01 6 7583579 7583579 A G DSP Silent p.K2028K 0.42 TCGA-78-7539-01 6 86351130 86351130 C T SYNCRIP Missense_Mutation p.G10S 0.22 tolerated(0.25) benign(0.061) TCGA-78-7539-01 6 89907945 89907945 G A GABRR1 Silent p.L122L 0.21 TCGA-78-7539-01 6 90348409 90348409 C A LYRM2 Silent p.A9A 0.17 TCGA-78-7539-01 6 91281451 91281451 C G MAP3K7 Missense_Mutation p.E66Q 0.12 deleterious(0.01) possibly_damaging(0.87) TCGA-78-7539-01 7 100151083 100151083 C T AGFG2 Missense_Mutation p.P182L 0.14 deleterious(0.05) possibly_damaging(0.601) TCGA-78-7539-01 7 102036862 102036862 G A PRKRIP1 Missense_Mutation p.A2T 0.67 deleterious_low_confidence(0.01) unknown(0) TCGA-78-7539-01 7 103341380 103341380 G A RELN Silent p.D293D 0.38 TCGA-78-7539-01 7 103808810 103808810 C T ORC5 Intron 0.19 TCGA-78-7539-01 7 114268764 114268764 C T FOXP2 Intron 0.14 TCGA-78-7539-01 7 129046264 129046264 G C AHCYL2 Missense_Mutation p.V418L 0.17 deleterious(0.01) benign(0.069) TCGA-78-7539-01 7 129091575 129091575 C G STRIP2 Silent p.L132L 0.26 TCGA-78-7539-01 7 134222405 134222405 G A AKR1B10 Missense_Mutation p.A245T 0.18 tolerated(0.7) benign(0.003) TCGA-78-7539-01 7 135304260 135304260 C G NUP205 Silent p.L1351L 0.40 TCGA-78-7539-01 7 140482954 140482954 G C BRAF Nonsense_Mutation p.S394* 0.16 TCGA-78-7539-01 7 142460304 142460304 G T PRSS1 Missense_Mutation p.Q159H 0.05 tolerated(0.06) benign(0.292) TCGA-78-7539-01 7 142988758 142988758 C T CASP2 Missense_Mutation p.T67I 0.14 deleterious(0) probably_damaging(0.996) TCGA-78-7539-01 7 143792833 143792833 C T OR2A12 Silent p.C211C 0.33 TCGA-78-7539-01 7 148768612 148768612 C T ZNF786 Missense_Mutation p.A418T 0.14 tolerated(0.58) possibly_damaging(0.54) TCGA-78-7539-01 7 150648011 150648011 C G KCNH2 Missense_Mutation p.A715P 0.33 deleterious(0.01) probably_damaging(0.983) TCGA-78-7539-01 7 150696133 150696133 C A NOS3 Missense_Mutation p.P306T 0.44 deleterious(0) probably_damaging(0.996) TCGA-78-7539-01 7 150764008 150764008 G C SLC4A2 Missense_Mutation p.Q298H 0.33 tolerated(0.71) benign(0.001) TCGA-78-7539-01 7 4277383 4277383 G T SDK1 Missense_Mutation p.G2033W 0.54 deleterious(0) probably_damaging(1) TCGA-78-7539-01 7 47882650 47882650 G C PKD1L1 Missense_Mutation p.I1785M 0.23 deleterious(0) probably_damaging(0.989) TCGA-78-7539-01 7 5103989 5103989 A G RBAK Missense_Mutation p.K301R 0.45 deleterious(0.02) probably_damaging(0.988) TCGA-78-7539-01 7 53103733 53103733 G T POM121L12 Silent p.G123G 0.20 TCGA-78-7539-01 7 57187738 57187738 C A ZNF479 Nonsense_Mutation p.E462* 0.35 TCGA-78-7539-01 7 6456236 6456236 G C DAGLB Intron 0.20 TCGA-78-7539-01 7 64864225 64864225 G T ZNF92 Nonsense_Mutation p.E400* 0.15 TCGA-78-7539-01 7 72738498 72738498 G C TRIM50 Silent p.L96L 0.16 TCGA-78-7539-01 7 73097781 73097781 G C DNAJC30 5'UTR 0.11 TCGA-78-7539-01 7 83640603 83640603 C A SEMA3A Missense_Mutation p.G274V 0.21 deleterious(0) probably_damaging(0.998) TCGA-78-7539-01 8 10465806 10465806 C T RP1L1 Silent p.E1934E 0.27 TCGA-78-7539-01 8 105510107 105510107 G A LRP12 Missense_Mutation p.R225C 0.32 deleterious(0.02) probably_damaging(0.996) TCGA-78-7539-01 8 116632009 116632009 T G TRPS1 Missense_Mutation p.K106Q 0.12 deleterious_low_confidence(0) probably_damaging(0.951) TCGA-78-7539-01 8 134030239 134030239 C T TG Missense_Mutation p.P2260L 0.42 tolerated(0.07) benign(0.005) TCGA-78-7539-01 8 145095676 145095676 C G SPATC1 Missense_Mutation p.S325C 0.45 deleterious(0.02) possibly_damaging(0.724) TCGA-78-7539-01 8 1881965 1881965 G C ARHGEF10 Splice_Site p.X1027_splice 0.23 TCGA-78-7539-01 8 54859233 54859233 T A RGS20 Missense_Mutation p.V223D 0.09 deleterious(0.01) benign(0.072) TCGA-78-7539-01 8 57128978 57128978 C G CHCHD7 Intron 0.21 TCGA-78-7539-01 8 65528839 65528839 C T CYP7B1 Splice_Site p.X87_splice 0.22 TCGA-78-7539-01 8 68007596 68007596 A T CSPP1 Silent p.T193T 0.15 TCGA-78-7539-01 8 70550826 70550826 G C SULF1 Missense_Mutation p.E792Q 0.16 deleterious(0) probably_damaging(0.998) TCGA-78-7539-01 8 79652305 79652305 C G IL7 Missense_Mutation p.E54Q 0.18 tolerated(0.08) probably_damaging(0.932) TCGA-78-7539-01 8 89198707 89198707 G T MMP16 Nonsense_Mutation p.Y134* 0.32 TCGA-78-7539-01 8 98041644 98041644 G A CPQ Silent p.K325K 0.27 TCGA-78-7539-01 9 114304757 114304757 G C ZNF483 Missense_Mutation p.Q514H 0.22 deleterious(0) benign(0.364) TCGA-78-7539-01 9 131600361 131600361 C A CCBL1 Missense_Mutation p.G136V 0.37 deleterious(0) probably_damaging(0.999) TCGA-78-7539-01 9 135464746 135464746 G A BARHL1 Missense_Mutation p.G274D 0.29 tolerated(0.05) probably_damaging(0.915) TCGA-78-7539-01 9 139311650 139311650 C T PMPCA Missense_Mutation p.T294I 0.31 deleterious(0) possibly_damaging(0.724) TCGA-78-7539-01 9 14740193 14740193 G T FREM1 Missense_Mutation p.H2098Q 0.42 tolerated(0.21) benign(0.06) TCGA-78-7539-01 9 32632473 32632473 C T TAF1L Silent p.E1035E 0.16 TCGA-78-7539-01 9 35563186 35563186 G C FAM166B Missense_Mutation p.S88C 0.13 tolerated(0.06) benign(0.06) TCGA-78-7539-01 9 36170550 36170550 G T CCIN Missense_Mutation p.D351Y 0.17 deleterious(0.03) probably_damaging(0.975) TCGA-78-7539-01 9 5988524 5988524 C T KIAA2026 Silent p.T205T 0.15 TCGA-78-7539-01 9 6986486 6986486 A T KDM4C Missense_Mutation p.K499N 0.14 tolerated(0.34) benign(0.001) TCGA-78-7539-01 9 71687670 71687670 G C FXN Missense_Mutation p.D209H 0.18 deleterious(0.01) benign(0.44) TCGA-78-7539-01 9 8436648 8436648 C T PTPRD Missense_Mutation p.D1344N 0.16 tolerated(0.15) probably_damaging(0.952) TCGA-78-7539-01 9 96439907 96439907 G A PHF2 Silent p.Q1080Q 0.21 TCGA-78-7539-01 X 102931253 102931253 T A MORF4L2 Missense_Mutation p.I235F 0.16 deleterious(0.05) benign(0.27) TCGA-78-7539-01 X 107909764 107909764 G A COL4A5 Missense_Mutation p.E1165K 0.13 unknown(0) TCGA-78-7539-01 X 123190075 123190075 C G STAG2 Missense_Mutation p.L432V 0.31 tolerated(0.06) probably_damaging(0.965) TCGA-78-7539-01 X 12734961 12734961 G T FRMPD4 Nonsense_Mutation p.E795* 0.22 TCGA-78-7539-01 X 135429886 135429886 C T GPR112 Missense_Mutation p.P1341S 0.45 tolerated(0.23) benign(0.074) TCGA-78-7539-01 X 135432460 135432460 G - GPR112 Frame_Shift_Del p.V2200* 0.39 TCGA-78-7539-01 X 13681425 13681425 G A TCEANC Silent p.L296L 0.27 TCGA-78-7539-01 X 148037480 148037480 G C AFF2 Missense_Mutation p.E635D 0.25 tolerated(0.06) benign(0.015) TCGA-78-7539-01 X 14883041 14883041 G C FANCB Missense_Mutation p.Q198E 0.17 tolerated(0.33) benign(0.037) TCGA-78-7539-01 X 151093032 151093032 G A MAGEA4 Missense_Mutation p.R299H 0.29 tolerated(0.1) benign(0.001) TCGA-78-7539-01 X 152482539 152482539 C G MAGEA1 Missense_Mutation p.D158H 0.27 deleterious(0) benign(0.122) TCGA-78-7539-01 X 15339736 15339736 A G PIGA Silent p.S449S 0.21 TCGA-78-7539-01 X 20187547 20187547 C G RPS6KA3 Missense_Mutation p.Q472H 0.19 tolerated(0.16) benign(0.096) TCGA-78-7539-01 X 21674331 21674331 C A KLHL34 Missense_Mutation p.G526C 0.38 deleterious(0) probably_damaging(0.993) TCGA-78-7539-01 X 21875591 21875591 C G YY2 Missense_Mutation p.T330R 0.17 deleterious(0) probably_damaging(1) TCGA-78-7539-01 X 26212565 26212565 C A MAGEB6 Missense_Mutation p.T201K 0.27 tolerated(0.67) benign(0) TCGA-78-7539-01 X 34148133 34148133 G A FAM47A Nonsense_Mutation p.Q755* 0.20 TCGA-78-7539-01 X 37028224 37028224 C A FAM47C Missense_Mutation p.H581N 0.32 deleterious_low_confidence(0.03) benign(0.216) TCGA-78-7539-01 X 38262962 38262962 T A OTC Missense_Mutation p.F211Y 0.22 deleterious(0) possibly_damaging(0.809) TCGA-78-7539-01 X 46332715 46332715 C T KRBOX4 3'UTR 0.26 TCGA-78-7539-01 X 47100188 47100188 G A USP11 Silent p.S296S 0.17 TCGA-78-7539-01 X 48164277 48164277 G A SSX9 RNA 0.21 TCGA-78-7539-01 X 53284025 53284025 A T IQSEC2 Missense_Mutation p.M363K 0.24 deleterious(0) probably_damaging(0.998) TCGA-78-7539-01 X 57162438 57162438 G T SPIN2A Missense_Mutation p.T198K 0.25 deleterious(0.04) benign(0.001) TCGA-78-7539-01 X 6069572 6069572 G C NLGN4X 5'UTR 0.20 TCGA-78-7539-01 X 63411898 63411898 C A AMER1 Silent p.L423L 0.30 TCGA-78-7539-01 X 71496038 71496038 T C RPS4X Missense_Mutation p.H17R 0.09 deleterious(0.02) benign(0.27) TCGA-78-7539-01 X 77913593 77913593 G T ZCCHC5 Missense_Mutation p.P109T 0.46 tolerated_low_confidence(0.09) benign(0.086) TCGA-78-7539-01 X 82763329 82763329 G T POU3F4 5'UTR 0.30 TCGA-78-7539-01 X 96139888 96139888 C T RPA4 Silent p.N193N 0.27 TCGA-78-7540-01 10 108412182 108412182 C T SORCS1 Silent p.A811A 0.49 TCGA-78-7540-01 11 20658729 20658729 C T SLC6A5 Silent p.I583I 0.16 TCGA-78-7540-01 12 12814367 12814367 C A GPR19 Missense_Mutation p.R339I 0.49 deleterious(0) probably_damaging(0.914) TCGA-78-7540-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.57 deleterious(0) possibly_damaging(0.479) TCGA-78-7540-01 12 58015172 58015172 T C SLC26A10 Missense_Mutation p.S173P 0.24 tolerated(0.31) benign(0.007) TCGA-78-7540-01 14 81609917 81609917 C T TSHR Silent p.S505S 0.27 TCGA-78-7540-01 14 94405662 94405662 T C ASB2 Missense_Mutation p.Y470C 0.27 tolerated(0.16) benign(0.021) TCGA-78-7540-01 15 74481499 74481499 C T STRA6 Silent p.Q388Q 0.16 TCGA-78-7540-01 15 79064048 79064048 C A ADAMTS7 Missense_Mutation p.G752V 0.56 deleterious(0) probably_damaging(0.987) TCGA-78-7540-01 16 2034709 2034709 C T GFER Intron 0.34 TCGA-78-7540-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.28 deleterious(0) probably_damaging(0.998) TCGA-78-7540-01 18 6241405 6241405 G A L3MBTL4 Silent p.A168A 0.20 TCGA-78-7540-01 19 51133107 51133107 G A SYT3 Silent p.N332N 0.24 TCGA-78-7540-01 1 111861206 111861206 G A CHIA Missense_Mutation p.S274N 0.28 deleterious(0.03) benign(0.009) TCGA-78-7540-01 1 90399791 90399791 C T LRRC8D Silent p.F388F 0.17 TCGA-78-7540-01 20 57484421 57484421 G A GNAS Missense_Mutation p.R844H 0.18 deleterious(0.01) probably_damaging(1) TCGA-78-7540-01 22 46655314 46655314 G A PKDREJ Silent p.N1302N 0.28 TCGA-78-7540-01 2 43452831 43452832 - C ZFP36L2 Frame_Shift_Ins p.T38Dfs*46 0.44 TCGA-78-7540-01 3 16237394 16237394 C T GALNT15 Silent p.L223L 0.23 TCGA-78-7540-01 3 48623857 48623857 C T COL7A1 Missense_Mutation p.R1153H 0.24 unknown(0) TCGA-78-7540-01 3 50357600 50357600 C T HYAL2 Nonsense_Mutation p.W107* 0.32 TCGA-78-7540-01 5 140741350 140741350 G A PCDHGB2 Missense_Mutation p.V550M 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-78-7540-01 7 1478552 1478552 C T MICALL2 Silent p.P682P 0.15 TCGA-78-7540-01 7 157387931 157387931 T A PTPRN2 Missense_Mutation p.Q832L 0.45 deleterious(0) probably_damaging(1) TCGA-78-7540-01 7 23352016 23352016 G T IGF2BP3 Missense_Mutation p.L569M 0.23 tolerated_low_confidence(0.12) benign(0.322) TCGA-78-7540-01 7 91671477 91671477 C T AKAP9 Missense_Mutation p.R1679C 0.40 probably_damaging(0.931) TCGA-78-7540-01 8 36780101 36780101 C T KCNU1 Missense_Mutation p.T897M 0.29 deleterious(0.03) possibly_damaging(0.891) TCGA-78-7540-01 9 107289445 107289445 C G OR13C4 Missense_Mutation p.G16R 0.24 deleterious(0.01) probably_damaging(1) TCGA-78-7540-01 9 119976979 119976979 C T ASTN2 Missense_Mutation p.V225M 0.34 tolerated_low_confidence(0.85) unknown(0) TCGA-78-7540-01 9 120476644 120476644 G T TLR4 Missense_Mutation p.W746C 0.35 deleterious(0) probably_damaging(1) TCGA-78-7540-01 9 35561302 35561302 G A RUSC2 Missense_Mutation p.D1492N 0.41 tolerated(0.29) probably_damaging(0.999) TCGA-78-7540-01 9 91680488 91680488 G A SHC3 Missense_Mutation p.T264I 0.28 deleterious(0.01) possibly_damaging(0.908) TCGA-78-7540-01 X 114249119 114249119 G C IL13RA2 Missense_Mutation p.L89V 0.32 deleterious(0) probably_damaging(0.928) TCGA-78-7540-01 X 114249132 114249132 G A IL13RA2 Silent p.I84I 0.38 TCGA-78-7540-01 X 114250375 114250375 G A IL13RA2 Missense_Mutation p.P35L 0.29 deleterious(0) probably_damaging(1) TCGA-78-7540-01 X 54837297 54837297 G A MAGED2 Missense_Mutation p.S194N 0.18 tolerated(0.14) benign(0.017) TCGA-78-7540-01 X 69282643 69282643 G A OTUD6A Missense_Mutation p.R90H 0.55 tolerated(0.17) benign(0.049) TCGA-78-7542-01 10 100995443 100995443 G A HPSE2 Silent p.S39S 0.42 TCGA-78-7542-01 10 102505874 102505874 C A PAX2 5'UTR 0.36 TCGA-78-7542-01 10 105331285 105331285 G A NEURL1 Missense_Mutation p.G119R 0.12 deleterious(0) probably_damaging(1) TCGA-78-7542-01 10 106937762 106937762 G A SORCS3 Intron 0.42 TCGA-78-7542-01 10 108923969 108923969 C A SORCS1 Missense_Mutation p.G106C 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.746) TCGA-78-7542-01 10 120882985 120882985 C T FAM45A Silent p.L200L 0.38 TCGA-78-7542-01 10 125526576 125526576 C A CPXM2 Missense_Mutation p.W464C 0.46 deleterious(0) probably_damaging(1) TCGA-78-7542-01 10 131636174 131636174 G T EBF3 3'UTR 0.14 TCGA-78-7542-01 10 131639270 131639270 C G EBF3 Missense_Mutation p.V458L 0.35 tolerated_low_confidence(0.16) benign(0.03) TCGA-78-7542-01 10 13735890 13735890 C A FRMD4A Intron 0.12 TCGA-78-7542-01 10 15151838 15151838 T A NMT2 Nonsense_Mutation p.K447* 0.14 TCGA-78-7542-01 10 18827284 18827284 C A CACNB2 Missense_Mutation p.S493Y 0.25 deleterious(0) possibly_damaging(0.498) TCGA-78-7542-01 10 18827288 18827288 T A CACNB2 Missense_Mutation p.N494K 0.25 tolerated(0.09) benign(0.044) TCGA-78-7542-01 10 26463005 26463005 T C MYO3A Missense_Mutation p.V1271A 0.35 tolerated_low_confidence(0.95) benign(0) TCGA-78-7542-01 10 26463048 26463048 G T MYO3A Missense_Mutation p.L1285F 0.21 tolerated_low_confidence(0.09) benign(0.211) TCGA-78-7542-01 10 37508664 37508664 A T ANKRD30A Nonsense_Mutation p.K1286* 0.21 TCGA-78-7542-01 10 46121515 46121515 G A ZFAND4 Missense_Mutation p.R586C 0.42 tolerated(0.18) benign(0.003) TCGA-78-7542-01 10 53564429 53564429 A G PRKG1 Missense_Mutation p.E226G 0.15 deleterious(0) probably_damaging(0.947) TCGA-78-7542-01 10 55849811 55849811 C T PCDH15 Missense_Mutation p.E644K 0.30 deleterious(0) probably_damaging(0.991) TCGA-78-7542-01 10 5929972 5929972 C T ANKRD16 Missense_Mutation p.E125K 0.29 tolerated(0.11) benign(0.304) TCGA-78-7542-01 10 5948307 5948307 A T FBXO18 Silent p.P206P 0.47 TCGA-78-7542-01 10 71562455 71562455 C T COL13A1 Silent p.V92V 0.30 TCGA-78-7542-01 10 72495043 72495043 C G ADAMTS14 Missense_Mutation p.Q494E 0.49 tolerated(0.1) benign(0.006) TCGA-78-7542-01 10 82180396 82180396 A G FAM213A Missense_Mutation p.E58G 0.08 tolerated(0.59) benign(0) TCGA-78-7542-01 10 87482766 87482766 G T GRID1 Missense_Mutation p.P664H 0.44 deleterious(0) possibly_damaging(0.868) TCGA-78-7542-01 10 99995212 99995212 T C R3HCC1L Missense_Mutation p.M688T 0.50 deleterious(0.01) possibly_damaging(0.844) TCGA-78-7542-01 11 100179257 100179257 C A CNTN5 Intron 0.50 TCGA-78-7542-01 11 100933417 100933417 T C PGR Missense_Mutation p.Q658R 0.11 deleterious(0.02) possibly_damaging(0.844) TCGA-78-7542-01 11 102585338 102585338 G A MMP8 Missense_Mutation p.A380V 0.33 deleterious(0.01) probably_damaging(0.986) TCGA-78-7542-01 11 1028697 1028697 T A MUC6 Missense_Mutation p.I514F 0.45 unknown(0) TCGA-78-7542-01 11 1028698 1028698 G T MUC6 Silent p.P513P 0.45 TCGA-78-7542-01 11 111844948 111844948 C A DIXDC1 Nonsense_Mutation p.S173* 0.22 TCGA-78-7542-01 11 114569400 114569400 G A NXPE2 Missense_Mutation p.V256M 0.32 tolerated(0.31) benign(0.1) TCGA-78-7542-01 11 119510581 119510581 C A RP11-196E1.3 RNA 0.54 TCGA-78-7542-01 11 122650373 122650373 G T UBASH3B Missense_Mutation p.D191Y 0.24 deleterious(0.02) probably_damaging(0.994) TCGA-78-7542-01 11 122931888 122931888 G A HSPA8 Missense_Mutation p.R49W 0.47 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-78-7542-01 11 16848004 16848004 C T PLEKHA7 Missense_Mutation p.E336K 0.38 tolerated(0.14) benign(0.043) TCGA-78-7542-01 11 17519757 17519757 G T USH1C Silent p.T814T 0.15 TCGA-78-7542-01 11 18231930 18231930 T C RP11-113D6.10 3'UTR 0.32 TCGA-78-7542-01 11 18759452 18759452 C G PTPN5 Missense_Mutation p.K325N 0.18 deleterious(0) probably_damaging(1) TCGA-78-7542-01 11 20066601 20066601 G A NAV2 Missense_Mutation p.R1119Q 0.14 deleterious(0.04) probably_damaging(0.992) TCGA-78-7542-01 11 21392425 21392425 G C NELL1 Missense_Mutation p.G526R 0.10 deleterious(0) probably_damaging(0.999) TCGA-78-7542-01 11 27141304 27141304 C A BBOX1 Missense_Mutation p.Q250K 0.51 tolerated(0.44) benign(0.007) TCGA-78-7542-01 11 30914513 30914513 G T DCDC1 Missense_Mutation p.S1642Y 0.36 tolerated(0.32) benign(0.013) TCGA-78-7542-01 11 31531535 31531535 A C ELP4 Silent p.P68P 0.36 TCGA-78-7542-01 11 44959846 44959846 C A TP53I11 Missense_Mutation p.S14I 0.20 deleterious(0) probably_damaging(0.999) TCGA-78-7542-01 11 4825094 4825094 G T OR52R1 Missense_Mutation p.Q173K 0.09 tolerated(0.34) benign(0.102) TCGA-78-7542-01 11 5080090 5080090 G T OR52E2 Silent p.A256A 0.42 TCGA-78-7542-01 11 5255665 5255665 G C HBD 5'UTR 0.29 TCGA-78-7542-01 11 55595459 55595459 C A OR5L2 Silent p.I255I 0.49 TCGA-78-7542-01 11 55872770 55872770 G A OR8H2 Silent p.A84A 0.04 TCGA-78-7542-01 11 56380979 56380979 C A OR5M1 5'Flank 0.41 TCGA-78-7542-01 11 57995427 57995427 C T OR10Q1 Silent p.R307R 0.12 TCGA-78-7542-01 11 5862504 5862504 C T OR52E6 Silent p.L208L 0.24 TCGA-78-7542-01 11 60567455 60567455 G T MS4A10 3'UTR 0.31 TCGA-78-7542-01 11 61178472 61178472 T A CPSF7 Missense_Mutation p.Q496H 0.07 deleterious(0.02) probably_damaging(0.977) TCGA-78-7542-01 11 62293335 62293335 C A AHNAK Missense_Mutation p.D2852Y 0.27 probably_damaging(0.999) TCGA-78-7542-01 11 62300119 62300119 T A AHNAK Silent p.T590T 0.26 TCGA-78-7542-01 11 63279290 63279290 C A LGALS12 Missense_Mutation p.L232M 0.27 tolerated(0.06) probably_damaging(0.997) TCGA-78-7542-01 11 7060055 7060055 G T NLRP14 Missense_Mutation p.G80C 0.33 deleterious(0.01) probably_damaging(0.988) TCGA-78-7542-01 11 7060056 7060056 G T NLRP14 Missense_Mutation p.G80V 0.33 deleterious(0.03) probably_damaging(0.938) TCGA-78-7542-01 11 88300349 88300349 G T GRM5 Silent p.R834R 0.24 TCGA-78-7542-01 11 89028428 89028428 T A TYR Missense_Mutation p.L495H 0.26 tolerated(0.29) possibly_damaging(0.759) TCGA-78-7542-01 12 102110587 102110587 T A CHPT1 Nonsense_Mutation p.Y215* 0.12 TCGA-78-7542-01 12 116399155 116399155 C A MED13L Silent p.P2183P 0.42 TCGA-78-7542-01 12 117964883 117964883 G A KSR2 Missense_Mutation p.T615M 0.46 tolerated(0.09) possibly_damaging(0.648) TCGA-78-7542-01 12 124817787 124817787 C A NCOR2 Missense_Mutation p.G2215V 0.59 possibly_damaging(0.511) TCGA-78-7542-01 12 48921852 48921852 C A OR8S1 Missense_Mutation p.S349Y 0.57 possibly_damaging(0.608) TCGA-78-7542-01 12 52314573 52314573 G T ACVRL1 Nonsense_Mutation p.E470* 0.43 TCGA-78-7542-01 12 52938247 52938247 G A KRT71 3'UTR 0.53 TCGA-78-7542-01 12 6204622 6204622 C G VWF Intron 0.43 TCGA-78-7542-01 12 71029663 71029663 C A PTPRB Missense_Mutation p.R80L 0.58 tolerated_low_confidence(0.1) benign(0.025) TCGA-78-7542-01 12 7942359 7942359 C A NANOG Missense_Mutation p.T50N 0.54 tolerated(0.08) benign(0.029) TCGA-78-7542-01 13 28589732 28589732 G T FLT3 Nonsense_Mutation p.S883* 0.51 TCGA-78-7542-01 13 28608088 28608088 G A FLT3 Silent p.N626N 0.50 TCGA-78-7542-01 13 42263624 42263624 G A VWA8 Missense_Mutation p.H1333Y 0.45 tolerated(0.24) benign(0.222) TCGA-78-7542-01 14 24680654 24680654 G A CHMP4A Missense_Mutation p.A152V 0.16 deleterious(0) probably_damaging(0.995) TCGA-78-7542-01 14 24885569 24885569 G A NYNRIN Silent p.T1538T 0.20 TCGA-78-7542-01 14 33291952 33291952 C T AKAP6 Missense_Mutation p.P1645S 0.14 deleterious(0) probably_damaging(0.998) TCGA-78-7542-01 14 36005115 36005115 C A INSM2 Silent p.R553R 0.45 TCGA-78-7542-01 14 75497253 75497253 A G MLH3 Missense_Mutation p.I1327T 0.03 deleterious(0) possibly_damaging(0.898) TCGA-78-7542-01 14 81297531 81297532 CC ACA CEP128 Frame_Shift_Ins p.M388Ifs*21 0.31 TCGA-78-7542-01 14 90651091 90651091 A T KCNK13 Missense_Mutation p.N324I 0.52 tolerated(0.08) benign(0.035) TCGA-78-7542-01 14 99641437 99641437 G T BCL11B Missense_Mutation p.A579E 0.38 tolerated(1) benign(0.008) TCGA-78-7542-01 15 20489446 20489446 T C CHEK2P2 RNA 0.08 TCGA-78-7542-01 15 23021414 23021414 G A NIPA2 5'UTR 0.48 TCGA-78-7542-01 15 24921416 24921416 G T NPAP1 Silent p.A134A 0.29 TCGA-78-7542-01 15 25430592 25430592 G T SNORD115-10 5'Flank 0.25 TCGA-78-7542-01 15 25430593 25430593 G T SNORD115-10 5'Flank 0.26 TCGA-78-7542-01 15 26793113 26793113 C A GABRB3 Missense_Mutation p.G417W 0.38 deleterious(0.02) possibly_damaging(0.591) TCGA-78-7542-01 15 29561629 29561629 T A NDNL2 Missense_Mutation p.Q94L 0.54 deleterious(0.03) possibly_damaging(0.861) TCGA-78-7542-01 15 33954852 33954852 G T RYR3 Silent p.G1707G 0.40 TCGA-78-7542-01 15 43641179 43641179 C T ADAL Silent p.L209L 0.39 TCGA-78-7542-01 15 43641280 43641280 C T ADAL Intron 0.46 TCGA-78-7542-01 15 60806923 60806923 T A RORA Missense_Mutation p.T139S 0.46 tolerated(0.99) benign(0.034) TCGA-78-7542-01 15 88522525 88522525 G A NTRK3 Intron 0.32 TCGA-78-7542-01 15 88678565 88678565 A G NTRK3 Missense_Mutation p.V324A 0.49 tolerated(0.28) benign(0.003) TCGA-78-7542-01 15 89805064 89805064 G T FANCI Missense_Mutation p.G153V 0.45 deleterious(0) probably_damaging(0.999) TCGA-78-7542-01 15 91447494 91447494 C T MAN2A2 Silent p.V19V 0.53 TCGA-78-7542-01 15 99678309 99678309 G A TTC23 Missense_Mutation p.P417L 0.44 tolerated(0.33) benign(0.003) TCGA-78-7542-01 16 14311020 14311020 G C MKL2 Missense_Mutation p.M130I 0.08 deleterious(0.01) possibly_damaging(0.85) TCGA-78-7542-01 16 20043068 20043068 C T GPR139 Missense_Mutation p.V351I 0.18 tolerated_low_confidence(1) benign(0) TCGA-78-7542-01 16 20355495 20355495 C T UMOD Splice_Site p.X395_splice 0.16 TCGA-78-7542-01 16 24826516 24826516 A T TNRC6A Missense_Mutation p.Y1574F 0.30 deleterious(0.03) probably_damaging(0.958) TCGA-78-7542-01 16 29845347 29845347 C T MVP Silent p.R179R 0.18 TCGA-78-7542-01 16 30780669 30780669 C T RNF40 Missense_Mutation p.R804W 0.39 deleterious(0) probably_damaging(0.945) TCGA-78-7542-01 16 31089217 31089217 C T ZNF646 Silent p.I524I 0.40 TCGA-78-7542-01 16 5053500 5053500 G T SEC14L5 Missense_Mutation p.D410Y 0.29 deleterious(0.01) possibly_damaging(0.905) TCGA-78-7542-01 16 51174189 51174189 G A SALL1 Silent p.D648D 0.25 TCGA-78-7542-01 16 55360368 55360368 C T IRX6 Silent p.L56L 0.39 TCGA-78-7542-01 16 68373273 68373273 G T PRMT7 Missense_Mutation p.V185L 0.35 deleterious(0) probably_damaging(0.947) TCGA-78-7542-01 16 81155284 81155284 G A PKD1L2 RNA 0.14 TCGA-78-7542-01 16 84126810 84126810 C A MBTPS1 Missense_Mutation p.V277F 0.30 deleterious(0) probably_damaging(1) TCGA-78-7542-01 16 89261522 89261522 C G CDH15 Missense_Mutation p.P802A 0.40 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-78-7542-01 16 89774285 89774285 C T VPS9D1 Missense_Mutation p.G627E 0.20 deleterious(0.01) benign(0.116) TCGA-78-7542-01 17 27370228 27370228 G - PIPOX 5'UTR 0.43 TCGA-78-7542-01 17 29667523 29667527 GACTC - NF1 Frame_Shift_Del p.D2308Afs*17 0.51 TCGA-78-7542-01 17 33679476 33679476 G T SLFN11 Missense_Mutation p.H869N 0.51 tolerated(1) benign(0.001) TCGA-78-7542-01 17 39140304 39140304 C A KRT40 Silent p.V74V 0.58 TCGA-78-7542-01 17 39394532 39394532 C T KRTAP9-8 Nonsense_Mutation p.Q77* 0.22 TCGA-78-7542-01 17 41955001 41955001 C T MPP2 3'UTR 0.45 TCGA-78-7542-01 17 43893861 43893861 G T CRHR1 Missense_Mutation p.G52C 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-78-7542-01 17 43893862 43893862 G T CRHR1 Missense_Mutation p.G52V 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-78-7542-01 17 45376782 45376782 T A ITGB3 Missense_Mutation p.L600Q 0.30 deleterious(0) probably_damaging(0.909) TCGA-78-7542-01 17 48551068 48551068 G A ACSF2 Silent p.V506V 0.64 TCGA-78-7542-01 17 49197912 49197912 C T SPAG9 Missense_Mutation p.E36K 0.37 tolerated(0.13) probably_damaging(0.992) TCGA-78-7542-01 17 56386681 56386681 C A BZRAP1 Nonsense_Mutation p.E1318* 0.26 TCGA-78-7542-01 17 59876591 59876591 C T BRIP1 Missense_Mutation p.E404K 0.39 deleterious(0) probably_damaging(1) TCGA-78-7542-01 17 6386998 6386998 C A PITPNM3 Silent p.T142T 0.46 TCGA-78-7542-01 17 65850718 65850718 G A BPTF Missense_Mutation p.E426K 0.08 possibly_damaging(0.619) TCGA-78-7542-01 17 67251713 67251713 C A ABCA5 Missense_Mutation p.V1347F 0.33 deleterious(0.04) possibly_damaging(0.467) TCGA-78-7542-01 17 6920672 6920672 C T C17orf49 3'UTR 0.07 TCGA-78-7542-01 17 71354288 71354288 G A SDK2 Silent p.A1841A 0.10 TCGA-78-7542-01 17 7319398 7319398 A G NLGN2 Missense_Mutation p.T536A 0.05 deleterious(0.04) probably_damaging(0.989) TCGA-78-7542-01 17 7578475 7578475 G - TP53 Frame_Shift_Del p.P152Rfs*18 0.35 TCGA-78-7542-01 17 79411726 79411726 C G RP11-1055B8.7 Missense_Mutation p.P849A 0.24 probably_damaging(0.997) TCGA-78-7542-01 18 11886778 11886778 C A MPPE1 Splice_Site p.X227_splice 0.40 TCGA-78-7542-01 18 28651738 28651738 C T DSC2 Missense_Mutation p.R653K 0.30 tolerated(1) benign(0.002) TCGA-78-7542-01 18 28720033 28720033 G A DSC1 Missense_Mutation p.P498S 0.16 deleterious(0) probably_damaging(0.999) TCGA-78-7542-01 18 2937988 2937988 A C LPIN2 Missense_Mutation p.I290M 0.06 tolerated(0.09) probably_damaging(0.954) TCGA-78-7542-01 18 30267189 30267189 G T KLHL14 Missense_Mutation p.H389Q 0.38 tolerated(0.09) possibly_damaging(0.813) TCGA-78-7542-01 18 30926228 30926228 A T CCDC178 Missense_Mutation p.I202N 0.05 deleterious(0) probably_damaging(0.999) TCGA-78-7542-01 18 31538225 31538225 G T NOL4 Missense_Mutation p.A405D 0.49 deleterious(0) probably_damaging(0.991) TCGA-78-7542-01 18 47803337 47803337 C - MBD1 Frame_Shift_Del p.R86Qfs*99 0.28 TCGA-78-7542-01 18 51729314 51729314 C A MBD2 Intron 0.43 TCGA-78-7542-01 18 59174760 59174760 C A CDH20 Silent p.P328P 0.45 TCGA-78-7542-01 18 61322875 61322875 G T SERPINB3 3'UTR 0.15 TCGA-78-7542-01 18 63430201 63430201 G T CDH7 Silent p.G41G 0.11 TCGA-78-7542-01 18 6949140 6949140 C A LAMA1 Missense_Mutation p.G2839V 0.47 deleterious(0) probably_damaging(1) TCGA-78-7542-01 18 70417797 70417797 G T NETO1 Silent p.G347G 0.50 TCGA-78-7542-01 18 74617172 74617172 G T ZNF236 Missense_Mutation p.G698C 0.09 deleterious(0) probably_damaging(0.998) TCGA-78-7542-01 18 9887087 9887087 C T TXNDC2 Missense_Mutation p.P204L 0.29 tolerated(0.31) benign(0.409) TCGA-78-7542-01 18 9954392 9954392 G T VAPA 3'Flank 0.33 TCGA-78-7542-01 19 110702 110702 G T OR4F17 Silent p.L8L 0.10 TCGA-78-7542-01 19 11200219 11200219 G A LDLR 5'UTR 0.24 TCGA-78-7542-01 19 14991976 14991976 G T OR7A17 Silent p.S64S 0.47 TCGA-78-7542-01 19 14991977 14991977 G T OR7A17 Missense_Mutation p.S64Y 0.49 deleterious_low_confidence(0) possibly_damaging(0.827) TCGA-78-7542-01 19 17533057 17533057 G A MVB12A Intron 0.51 TCGA-78-7542-01 19 19337293 19337293 A T NCAN Splice_Site p.X358_splice 0.43 TCGA-78-7542-01 19 19389578 19389578 C A SUGP1 Missense_Mutation p.G519V 0.39 deleterious(0) probably_damaging(0.987) TCGA-78-7542-01 19 22784217 22784217 C A AC011467.1 5'Flank 0.42 TCGA-78-7542-01 19 22817218 22817218 C A ZNF492 5'UTR 0.46 TCGA-78-7542-01 19 3005787 3005787 C A TLE2 Missense_Mutation p.K560N 0.07 deleterious(0.02) possibly_damaging(0.887) TCGA-78-7542-01 19 30934975 30934975 A G ZNF536 Missense_Mutation p.Q169R 0.56 deleterious(0) probably_damaging(0.994) TCGA-78-7542-01 19 36333029 36333029 G T NPHS1 Missense_Mutation p.P887H 0.83 deleterious(0) probably_damaging(0.988) TCGA-78-7542-01 19 41704752 41704752 G A CYP2S1 Missense_Mutation p.A265T 0.09 deleterious(0.01) possibly_damaging(0.821) TCGA-78-7542-01 19 43244541 43244541 T A PSG3 5'UTR 0.48 TCGA-78-7542-01 19 44591017 44591017 G A ZNF284 Silent p.K462K 0.52 TCGA-78-7542-01 19 46498409 46498409 G T CCDC61 5'Flank 0.55 TCGA-78-7542-01 19 48382314 48382314 C T SULT2A1 Silent p.L182L 0.25 TCGA-78-7542-01 19 49657521 49657521 C T HRC Missense_Mutation p.R325K 0.23 tolerated(1) benign(0.003) TCGA-78-7542-01 19 50979642 50979642 C A FAM71E1 Missense_Mutation p.G2W 0.44 deleterious_low_confidence(0.01) unknown(0) TCGA-78-7542-01 19 51920599 51920599 G T SIGLEC10 Missense_Mutation p.S53Y 0.48 deleterious(0.01) probably_damaging(0.928) TCGA-78-7542-01 19 52003360 52003360 G T SIGLEC12 Missense_Mutation p.P208T 0.44 deleterious(0) probably_damaging(0.993) TCGA-78-7542-01 19 52115477 52115477 C A SIGLEC5 3'UTR 0.53 TCGA-78-7542-01 19 52817532 52817532 G T ZNF480 Nonsense_Mutation p.G67* 0.43 TCGA-78-7542-01 19 55452299 55452299 C G NLRP7 Missense_Mutation p.G118R 0.49 tolerated(0.12) benign(0.065) TCGA-78-7542-01 19 56424435 56424435 G T NLRP13 Missense_Mutation p.L250M 0.29 deleterious(0) probably_damaging(1) TCGA-78-7542-01 19 57646670 57646670 G T ZIM3 Silent p.S345S 0.54 TCGA-78-7542-01 19 6458287 6458287 C A SLC25A23 Nonsense_Mutation p.E69* 0.56 TCGA-78-7542-01 19 6896442 6896442 C G EMR1 Missense_Mutation p.A43G 0.50 tolerated(0.17) benign(0.284) TCGA-78-7542-01 19 7620629 7620629 C T PNPLA6 Missense_Mutation p.R1035W 0.38 deleterious(0) probably_damaging(0.997) TCGA-78-7542-01 19 8563455 8563455 C T PRAM1 Missense_Mutation p.A413T 0.31 tolerated(0.7) benign(0.004) TCGA-78-7542-01 19 9088385 9088385 C A MUC16 Missense_Mutation p.G1144C 0.56 unknown(0) TCGA-78-7542-01 19 9639792 9639792 C A ZNF426 Missense_Mutation p.C310F 0.48 deleterious(0.03) probably_damaging(0.996) TCGA-78-7542-01 1 103463870 103463870 G A COL11A1 Missense_Mutation p.P731L 0.40 unknown(0) TCGA-78-7542-01 1 109369848 109369848 G T AKNAD1 Missense_Mutation p.P639T 0.54 deleterious(0.04) benign(0.065) TCGA-78-7542-01 1 114447361 114447361 G C AP4B1 5'UTR 0.29 TCGA-78-7542-01 1 11980303 11980303 C T KIAA2013 3'UTR 0.33 TCGA-78-7542-01 1 120054195 120054195 C A HSD3B1 Missense_Mutation p.A72D 0.31 deleterious(0) probably_damaging(0.988) TCGA-78-7542-01 1 120285605 120285605 A G PHGDH Missense_Mutation p.D462G 0.21 tolerated(0.87) benign(0) TCGA-78-7542-01 1 12820814 12820814 G T C1orf158 Missense_Mutation p.C172F 0.28 tolerated(0.1) benign(0.068) TCGA-78-7542-01 1 152058123 152058123 C A TCHHL1 Missense_Mutation p.D679Y 0.25 deleterious(0.02) possibly_damaging(0.595) TCGA-78-7542-01 1 152280365 152280365 G T FLG Missense_Mutation p.H2333N 0.21 benign(0.322) TCGA-78-7542-01 1 152326424 152326424 C T FLG2 Missense_Mutation p.V1280M 0.25 benign(0.018) TCGA-78-7542-01 1 153122333 153122333 T C SPRR2G 3'UTR 0.41 TCGA-78-7542-01 1 159161822 159161822 G C CADM3 Missense_Mutation p.W96S 0.16 deleterious(0.01) probably_damaging(1) TCGA-78-7542-01 1 159176248 159176248 C T DARC 3'UTR 0.30 TCGA-78-7542-01 1 159409813 159409813 C A OR10J1 Missense_Mutation p.L89I 0.16 tolerated(1) benign(0.004) TCGA-78-7542-01 1 160105660 160105660 C A ATP1A2 Silent p.S772S 0.20 TCGA-78-7542-01 1 160187467 160187467 T C DCAF8 Missense_Mutation p.D724G 0.17 deleterious(0.03) probably_damaging(0.917) TCGA-78-7542-01 1 160783461 160783461 G T LY9 Missense_Mutation p.V164L 0.27 tolerated(0.32) possibly_damaging(0.838) TCGA-78-7542-01 1 161645092 161645092 C A FCGR2B Missense_Mutation p.P269H 0.22 deleterious(0) probably_damaging(0.994) TCGA-78-7542-01 1 171756994 171756994 C A METTL13 Missense_Mutation p.F411L 0.10 tolerated(0.09) benign(0.058) TCGA-78-7542-01 1 173457082 173457082 A T PRDX6 3'UTR 0.35 TCGA-78-7542-01 1 17597416 17597416 C A PADI3 Silent p.R292R 0.22 TCGA-78-7542-01 1 179064300 179064300 T C TOR3A Missense_Mutation p.S381P 0.35 deleterious(0) probably_damaging(0.999) TCGA-78-7542-01 1 183617857 183617857 G T APOBEC4 Nonsense_Mutation p.Y20* 0.24 TCGA-78-7542-01 1 18809713 18809713 G A KLHDC7A Silent p.V746V 0.30 TCGA-78-7542-01 1 196274387 196274387 G T KCNT2 Missense_Mutation p.L858I 0.19 deleterious(0.02) possibly_damaging(0.831) TCGA-78-7542-01 1 196311222 196311222 G T KCNT2 Missense_Mutation p.H514N 0.20 deleterious(0.02) benign(0.008) TCGA-78-7542-01 1 20005550 20005550 C - HTR6 Frame_Shift_Del p.P338Hfs*116 0.38 TCGA-78-7542-01 1 200967643 200967643 A T KIF21B Missense_Mutation p.L649Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-78-7542-01 1 201036050 201036050 C A CACNA1S Silent p.L874L 0.19 TCGA-78-7542-01 1 205053359 205053359 G A TMEM81 Silent p.A30A 0.19 TCGA-78-7542-01 1 214818013 214818013 G T CENPF Missense_Mutation p.Q1700H 0.23 probably_damaging(0.997) TCGA-78-7542-01 1 214830292 214830292 C T CENPF Silent p.T2834T 0.18 TCGA-78-7542-01 1 217955640 217955640 G T SPATA17 Missense_Mutation p.W283L 0.27 tolerated(0.06) benign(0.078) TCGA-78-7542-01 1 232596659 232596659 C A SIPA1L2 Missense_Mutation p.Q1023H 0.39 deleterious(0.01) benign(0.008) TCGA-78-7542-01 1 236766400 236766400 T A HEATR1 Intron 0.14 TCGA-78-7542-01 1 237167691 237167691 C G MT1HL1 5'UTR 0.34 TCGA-78-7542-01 1 237843796 237843796 G C RYR2 Missense_Mutation p.R2979P 0.25 benign(0.022) TCGA-78-7542-01 1 240071510 240071510 G T CHRM3 Missense_Mutation p.R253S 0.15 deleterious(0) possibly_damaging(0.87) TCGA-78-7542-01 1 240351543 240351543 G C FMN2 Missense_Mutation p.R656P 0.24 unknown(0) TCGA-78-7542-01 1 243327830 243327830 G T CEP170 Silent p.I1144I 0.14 TCGA-78-7542-01 1 247492753 247492753 C A ZNF496 Missense_Mutation p.R43L 0.32 deleterious(0.03) probably_damaging(1) TCGA-78-7542-01 1 247978691 247978691 G T OR14A16 Missense_Mutation p.T114K 0.32 deleterious(0) probably_damaging(0.943) TCGA-78-7542-01 1 248263154 248263154 A T OR2L13 Silent p.T159T 0.31 TCGA-78-7542-01 1 248458061 248458061 C T OR2T12 Missense_Mutation p.A274T 0.06 deleterious(0.04) benign(0.069) TCGA-78-7542-01 1 248570175 248570175 C G OR2T1 Missense_Mutation p.H294D 0.17 deleterious(0) probably_damaging(1) TCGA-78-7542-01 1 27333018 27333018 C A FAM46B Missense_Mutation p.C232F 0.31 tolerated(0.1) probably_damaging(0.998) TCGA-78-7542-01 1 34684349 34684349 G T C1orf94 Missense_Mutation p.G595V 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-78-7542-01 1 35370615 35370615 G T DLGAP3 Missense_Mutation p.Q124K 0.38 deleterious(0.03) possibly_damaging(0.857) TCGA-78-7542-01 1 38158352 38158352 C T CDCA8 5'UTR 0.37 TCGA-78-7542-01 1 39910339 39910339 C G MACF1 Silent p.L4420L 0.31 TCGA-78-7542-01 1 46745195 46745195 C T LRRC41 Silent p.L704L 0.09 TCGA-78-7542-01 1 54683972 54683972 A T MRPL37 3'UTR 0.28 TCGA-78-7542-01 1 55622646 55622646 T A USP24 Missense_Mutation p.E474V 0.33 deleterious(0) probably_damaging(0.999) TCGA-78-7542-01 1 57372406 57372406 T - C8A Frame_Shift_Del p.I388Kfs*63 0.18 TCGA-78-7542-01 1 90400577 90400577 C T LRRC8D Silent p.I650I 0.22 TCGA-78-7542-01 20 1161830 1161830 G - TMEM74B Frame_Shift_Del p.R145Vfs*10 0.44 TCGA-78-7542-01 20 31606157 31606157 G A BPIFB2 Splice_Site p.X223_splice 0.76 TCGA-78-7542-01 20 34241416 34241416 T C RBM12 Missense_Mutation p.N610S 0.60 tolerated(0.25) probably_damaging(0.992) TCGA-78-7542-01 20 43052920 43052920 G T HNF4A Intron 0.62 TCGA-78-7542-01 20 43251662 43251662 C T ADA Missense_Mutation p.E222K 0.24 tolerated(0.51) benign(0.001) TCGA-78-7542-01 20 45797789 45797789 T G EYA2 Missense_Mutation p.D327E 0.08 tolerated(1) benign(0.004) TCGA-78-7542-01 20 55027328 55027328 C A CASS4 Missense_Mutation p.L366M 0.60 tolerated(0.41) benign(0.146) TCGA-78-7542-01 20 57246287 57246287 G T STX16 Missense_Mutation p.Q242H 0.58 tolerated(0.24) benign(0.021) TCGA-78-7542-01 20 5903171 5903171 C T CHGB Silent p.G127G 0.62 TCGA-78-7542-01 20 61537045 61537045 C A DIDO1 Intron 0.70 TCGA-78-7542-01 20 62038292 62038292 C A KCNQ2 Missense_Mutation p.R775M 0.38 deleterious_low_confidence(0) possibly_damaging(0.617) TCGA-78-7542-01 21 10914415 10914415 A G TPTE Missense_Mutation p.I435T 0.16 deleterious(0.04) possibly_damaging(0.491) TCGA-78-7542-01 21 28306833 28306833 G A ADAMTS5 Silent p.I547I 0.38 TCGA-78-7542-01 21 30925934 30925934 C T GRIK1 Missense_Mutation p.G900D 0.44 tolerated_low_confidence(0.26) benign(0.041) TCGA-78-7542-01 21 31015143 31015143 T A GRIK1 Intron 0.14 TCGA-78-7542-01 21 31964873 31964873 T A KRTAP6-3 Missense_Mutation p.C30S 0.20 unknown(0) TCGA-78-7542-01 21 32253249 32253249 G T KRTAP11-1 3'UTR 0.56 TCGA-78-7542-01 21 33296855 33296855 C G HUNK Missense_Mutation p.Q113E 0.13 tolerated(0.05) possibly_damaging(0.764) TCGA-78-7542-01 21 33296872 33296872 C T HUNK Silent p.I118I 0.12 TCGA-78-7542-01 21 33296887 33296887 C T HUNK Silent p.I123I 0.13 TCGA-78-7542-01 21 33296935 33296935 C T HUNK Silent p.V139V 0.14 TCGA-78-7542-01 21 33296974 33296974 C A HUNK Silent p.I152I 0.11 TCGA-78-7542-01 21 33297031 33297031 C T HUNK Silent p.I171I 0.13 TCGA-78-7542-01 21 41137706 41137706 C A IGSF5 Silent p.P115P 0.43 TCGA-78-7542-01 21 45550684 45550684 G A PWP2 3'UTR 0.21 TCGA-78-7542-01 21 46875678 46875678 C T COL18A1 Silent p.G78G 0.15 TCGA-78-7542-01 22 16449042 16449042 T G OR11H1 Missense_Mutation p.T255P 0.32 deleterious(0) probably_damaging(0.999) TCGA-78-7542-01 22 19175557 19175557 C T CLTCL1 Missense_Mutation p.S1457N 0.22 tolerated(0.62) benign(0.006) TCGA-78-7542-01 22 28196322 28196322 G T MN1 Missense_Mutation p.F70L 0.27 benign(0.002) TCGA-78-7542-01 22 32754369 32754369 A G RFPL3 Missense_Mutation p.K104R 0.18 tolerated(0.07) probably_damaging(0.998) TCGA-78-7542-01 22 32914151 32914151 T C SYN3 Missense_Mutation p.N497D 0.10 tolerated(0.2) possibly_damaging(0.829) TCGA-78-7542-01 22 50660931 50660931 C T TUBGCP6 Silent p.L787L 0.26 TCGA-78-7542-01 2 100903373 100903373 T A LONRF2 Intron 0.12 TCGA-78-7542-01 2 132277212 132277212 C T AC093838.4 RNA 0.30 TCGA-78-7542-01 2 132290207 132290207 G T CCDC74A Silent p.G243G 0.36 TCGA-78-7542-01 2 135890497 135890497 A T RAB3GAP1 Silent p.P423P 0.47 TCGA-78-7542-01 2 145161562 145161562 C A ZEB2 Missense_Mutation p.C243F 0.37 deleterious(0) probably_damaging(0.999) TCGA-78-7542-01 2 152732955 152732955 C A CACNB4 Missense_Mutation p.G169V 0.15 deleterious(0.03) possibly_damaging(0.851) TCGA-78-7542-01 2 160289857 160289863 TGCCTGT GCCTGC BAZ2B Frame_Shift_Del p.F438Sfs*5 0.17 TCGA-78-7542-01 2 166535352 166535352 C T CSRNP3 Nonsense_Mutation p.Q283* 0.31 TCGA-78-7542-01 2 166895987 166895987 T A SCN1A Silent p.V845V 0.23 TCGA-78-7542-01 2 168104029 168104029 C A XIRP2 Missense_Mutation p.L2043I 0.40 possibly_damaging(0.527) TCGA-78-7542-01 2 170013974 170013974 C G LRP2 Missense_Mutation p.E3976Q 0.13 benign(0.21) TCGA-78-7542-01 2 185798438 185798438 G T ZNF804A Nonsense_Mutation p.E122* 0.14 TCGA-78-7542-01 2 185801663 185801663 G T ZNF804A Nonsense_Mutation p.G514* 0.34 TCGA-78-7542-01 2 185801664 185801664 G T ZNF804A Missense_Mutation p.G514V 0.34 tolerated(0.25) probably_damaging(0.998) TCGA-78-7542-01 2 201741695 201741695 G T PPIL3 Missense_Mutation p.F106L 0.10 deleterious(0) probably_damaging(0.987) TCGA-78-7542-01 2 208993031 208993031 C T CRYGC Missense_Mutation p.G141R 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-78-7542-01 2 209141553 209141553 A T PIKFYVE Missense_Mutation p.Q147L 0.24 deleterious(0) possibly_damaging(0.904) TCGA-78-7542-01 2 211452821 211452821 G T CPS1 Missense_Mutation p.V227L 0.11 tolerated(1) benign(0.084) TCGA-78-7542-01 2 21225799 21225799 C A APOB Missense_Mutation p.Q4165H 0.14 possibly_damaging(0.459) TCGA-78-7542-01 2 219757817 219757817 C A WNT10A Missense_Mutation p.R360S 0.45 deleterious(0) probably_damaging(0.997) TCGA-78-7542-01 2 220247914 220247914 C A DNPEP Missense_Mutation p.G292V 0.19 tolerated(0.15) benign(0.003) TCGA-78-7542-01 2 220247927 220247927 C G DNPEP Missense_Mutation p.D288H 0.14 deleterious(0.05) possibly_damaging(0.841) TCGA-78-7542-01 2 225664932 225664932 T A DOCK10 Missense_Mutation p.N1481I 0.11 deleterious(0) probably_damaging(0.999) TCGA-78-7542-01 2 228754681 228754681 G T DAW1 Missense_Mutation p.G75C 0.31 tolerated(0.12) benign(0.009) TCGA-78-7542-01 2 232577179 232577179 G T PTMA Nonsense_Mutation p.E81* 0.41 TCGA-78-7542-01 2 242738535 242738535 G A GAL3ST2 Missense_Mutation p.G29R 0.45 tolerated(0.51) benign(0.028) TCGA-78-7542-01 2 30993187 30993187 G C CAPN13 Silent p.A172A 0.09 TCGA-78-7542-01 2 32476123 32476123 G T NLRC4 Silent p.R270R 0.10 TCGA-78-7542-01 2 39050281 39050281 C T DHX57 Missense_Mutation p.D1049N 0.18 tolerated(0.08) possibly_damaging(0.461) TCGA-78-7542-01 2 40656780 40656780 G A SLC8A1 Missense_Mutation p.A214V 0.21 deleterious(0) probably_damaging(1) TCGA-78-7542-01 2 49210072 49210072 C G FSHR Missense_Mutation p.G216A 0.41 deleterious(0) probably_damaging(0.987) TCGA-78-7542-01 2 5833565 5833565 C A SOX11 Missense_Mutation p.Q238K 0.70 deleterious(0.03) benign(0) TCGA-78-7542-01 2 6989766 6989766 C A CMPK2 3'UTR 0.64 TCGA-78-7542-01 2 87013041 87013041 G T CD8A 3'UTR 0.09 TCGA-78-7542-01 2 87013042 87013042 G T CD8A 3'UTR 0.09 TCGA-78-7542-01 2 90078094 90078094 G T IGKV3D-20 Missense_Mutation p.G44V 0.33 deleterious(0) benign(0) TCGA-78-7542-01 2 99013344 99013344 A T CNGA3 Missense_Mutation p.I571F 0.11 deleterious(0) possibly_damaging(0.865) TCGA-78-7542-01 3 119109712 119109713 - C ARHGAP31 Frame_Shift_Ins p.R256Pfs*6 0.13 TCGA-78-7542-01 3 129251193 129251193 C T RHO Silent p.V210V 0.24 TCGA-78-7542-01 3 130279226 130279226 G T COL6A6 Missense_Mutation p.L6F 0.25 tolerated(0.21) benign(0.005) TCGA-78-7542-01 3 133118862 133118862 G A BFSP2 5'UTR 0.31 TCGA-78-7542-01 3 157823817 157823817 C A SHOX2 5'UTR 0.16 TCGA-78-7542-01 3 173998981 173998981 C G NLGN1 Missense_Mutation p.T787S 0.28 tolerated_low_confidence(1) benign(0.015) TCGA-78-7542-01 3 179525601 179525601 G T PEX5L Missense_Mutation p.R513S 0.22 deleterious(0) probably_damaging(0.988) TCGA-78-7542-01 3 179525602 179525602 G T PEX5L Missense_Mutation p.N512K 0.23 deleterious(0) probably_damaging(0.993) TCGA-78-7542-01 3 184043403 184043403 G A EIF4G1 Missense_Mutation p.G1040S 0.13 tolerated(0.32) benign(0.068) TCGA-78-7542-01 3 184099529 184099529 G A CHRD Silent p.P179P 0.14 TCGA-78-7542-01 3 194387265 194387265 C T LSG1 Missense_Mutation p.R88K 0.13 tolerated(0.32) benign(0.003) TCGA-78-7542-01 3 197616455 197616455 T C IQCG Missense_Mutation p.K443R 0.28 deleterious_low_confidence(0) unknown(0) TCGA-78-7542-01 3 197616456 197616456 T A IQCG Nonsense_Mutation p.K443* 0.28 TCGA-78-7542-01 3 32746360 32746360 G A CNOT10 Missense_Mutation p.D119N 0.28 tolerated(0.44) benign(0.023) TCGA-78-7542-01 3 33540100 33540100 C A CLASP2 3'UTR 0.24 TCGA-78-7542-01 3 35778828 35778828 C A ARPP21 Missense_Mutation p.Q506K 0.19 deleterious(0.05) benign(0.038) TCGA-78-7542-01 3 36779106 36779106 C A DCLK3 Missense_Mutation p.A349S 0.13 tolerated(0.78) benign(0.001) TCGA-78-7542-01 3 36874113 36874113 G C TRANK1 Missense_Mutation p.R2277G 0.34 tolerated(0.44) benign(0.124) TCGA-78-7542-01 3 396435 396435 C A CHL1 Silent p.V382V 0.26 TCGA-78-7542-01 3 45636515 45636515 C A LIMD1 Missense_Mutation p.F48L 0.06 deleterious(0) probably_damaging(0.997) TCGA-78-7542-01 3 49405963 49405963 C T RHOA Missense_Mutation p.D59N 0.14 deleterious(0.01) probably_damaging(0.994) TCGA-78-7542-01 3 52731792 52731792 G A GLT8D1 Missense_Mutation p.R92C 0.33 deleterious(0) possibly_damaging(0.863) TCGA-78-7542-01 3 71021723 71021723 C A FOXP1 Missense_Mutation p.R547S 0.23 deleterious(0) probably_damaging(1) TCGA-78-7542-01 3 96706499 96706499 G T EPHA6 Missense_Mutation p.R259L 0.30 deleterious(0) probably_damaging(0.999) TCGA-78-7542-01 3 96706738 96706738 A T EPHA6 Missense_Mutation p.T339S 0.23 tolerated(0.39) probably_damaging(0.997) TCGA-78-7542-01 3 9719695 9719695 C T MTMR14 Missense_Mutation p.P284S 0.26 deleterious(0) probably_damaging(0.986) TCGA-78-7542-01 4 103979105 103979105 C A SLC9B2 Missense_Mutation p.A99S 0.33 tolerated(0.08) benign(0.086) TCGA-78-7542-01 4 11401447 11401447 G T HS3ST1 Silent p.G61G 0.37 TCGA-78-7542-01 4 119978890 119978890 G T SYNPO2 Missense_Mutation p.R1196M 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.839) TCGA-78-7542-01 4 13604380 13604380 C A BOD1L1 Missense_Mutation p.V1382L 0.39 benign(0.025) TCGA-78-7542-01 4 151412169 151412170 CT A LRBA Frame_Shift_Del p.E2127Dfs*37 0.16 TCGA-78-7542-01 4 155191130 155191130 C A DCHS2 Missense_Mutation p.D1712Y 0.44 deleterious(0) probably_damaging(0.914) TCGA-78-7542-01 4 155505648 155505648 C G FGA Silent p.R743R 0.36 TCGA-78-7542-01 4 15964579 15964579 C A FGFBP2 Missense_Mutation p.W58C 0.42 deleterious(0) possibly_damaging(0.707) TCGA-78-7542-01 4 174450181 174450181 G T HAND2 Missense_Mutation p.A87D 0.69 tolerated(0.66) benign(0.002) TCGA-78-7542-01 4 175898055 175898055 A T ADAM29 Missense_Mutation p.N460I 0.39 deleterious(0) probably_damaging(0.971) TCGA-78-7542-01 4 183675600 183675600 G T TENM3 Silent p.L1360L 0.38 TCGA-78-7542-01 4 185623263 185623263 G A CENPU Silent p.L302L 0.28 TCGA-78-7542-01 4 187078778 187078778 G A FAM149A Missense_Mutation p.V212I 0.15 tolerated(0.59) benign(0.004) TCGA-78-7542-01 4 189026075 189026075 C G TRIML2 Missense_Mutation p.Q17H 0.21 deleterious(0.02) benign(0.059) TCGA-78-7542-01 4 22415367 22415367 C A GPR125 Missense_Mutation p.R627I 0.42 tolerated(0.35) benign(0.391) TCGA-78-7542-01 4 2949391 2949404 AGCCACAGGCACAC - NOP14 Intron 0.28 TCGA-78-7542-01 4 41747870 41747870 C G PHOX2B Missense_Mutation p.R300T 0.46 deleterious_low_confidence(0) unknown(0) TCGA-78-7542-01 4 4190545 4190545 G C OTOP1 Silent p.V608V 0.28 TCGA-78-7542-01 4 44450140 44450140 G T KCTD8 Missense_Mutation p.A134D 0.15 deleterious(0) probably_damaging(1) TCGA-78-7542-01 4 47537986 47537986 A T ATP10D Missense_Mutation p.R317S 0.39 deleterious(0) possibly_damaging(0.809) TCGA-78-7542-01 4 57889625 57889625 G C POLR2B Missense_Mutation p.S882T 0.14 tolerated(0.39) benign(0.155) TCGA-78-7542-01 4 66361122 66361122 G T EPHA5 Silent p.P350P 0.17 TCGA-78-7542-01 4 66361123 66361123 G T EPHA5 Missense_Mutation p.P350H 0.17 deleterious(0.01) benign(0.177) TCGA-78-7542-01 4 68784900 68784900 G T TMPRSS11A Missense_Mutation p.P251H 0.34 deleterious(0.03) probably_damaging(0.999) TCGA-78-7542-01 4 71510165 71510165 A C ENAM Missense_Mutation p.N1008H 0.42 deleterious(0.04) benign(0.105) TCGA-78-7542-01 4 72629540 72629540 G T GC Missense_Mutation p.T215N 0.34 tolerated(0.14) benign(0.016) TCGA-78-7542-01 4 73984516 73984516 T C ANKRD17 Silent p.L1359L 0.38 TCGA-78-7542-01 4 8605750 8605750 T G CPZ Missense_Mutation p.F182V 0.18 tolerated(0.32) benign(0.007) TCGA-78-7542-01 4 88356226 88356226 G A NUDT9 Silent p.T67T 0.18 TCGA-78-7542-01 4 89013502 89013502 C T ABCG2 Missense_Mutation p.G618S 0.40 deleterious(0.01) possibly_damaging(0.841) TCGA-78-7542-01 4 90874233 90874233 C A MMRN1 Silent p.I1117I 0.16 TCGA-78-7542-01 4 99358165 99358165 G A RAP1GDS1 Missense_Mutation p.A549T 0.31 tolerated(0.1) possibly_damaging(0.774) TCGA-78-7542-01 5 140215287 140215287 G T PCDHA7 Missense_Mutation p.S440I 0.50 deleterious_low_confidence(0.03) benign(0.019) TCGA-78-7542-01 5 140222376 140222376 G C PCDHA8 Silent p.V490V 0.57 TCGA-78-7542-01 5 140482425 140482425 C A PCDHB3 Missense_Mutation p.P731H 0.47 tolerated_low_confidence(1) benign(0.003) TCGA-78-7542-01 5 140516563 140516563 G T PCDHB5 Missense_Mutation p.R516M 0.39 deleterious_low_confidence(0) possibly_damaging(0.845) TCGA-78-7542-01 5 140581012 140581012 C A PCDHB11 Missense_Mutation p.N555K 0.45 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-78-7542-01 5 149677827 149677827 C A ARSI Silent p.L220L 0.50 TCGA-78-7542-01 5 176830339 176830339 G A F12 Nonsense_Mutation p.Q483* 0.10 TCGA-78-7542-01 5 180057745 180057745 G T FLT4 Silent p.T70T 0.44 TCGA-78-7542-01 5 23527510 23527510 A T PRDM9 Silent p.T771T 0.16 TCGA-78-7542-01 5 24487864 24487864 C A CDH10 Missense_Mutation p.D759Y 0.10 deleterious(0) probably_damaging(0.998) TCGA-78-7542-01 5 32780843 32780843 T A NPR3 Missense_Mutation p.V404E 0.34 deleterious(0) probably_damaging(0.996) TCGA-78-7542-01 5 33576991 33576991 G A ADAMTS12 Missense_Mutation p.A1047V 0.07 tolerated(0.24) benign(0.002) TCGA-78-7542-01 5 33624341 33624341 C A ADAMTS12 Missense_Mutation p.G713V 0.15 deleterious(0) probably_damaging(0.993) TCGA-78-7542-01 5 33751555 33751555 C A ADAMTS12 Missense_Mutation p.R196S 0.22 deleterious(0.03) benign(0.014) TCGA-78-7542-01 5 33751556 33751556 C A ADAMTS12 Missense_Mutation p.R196M 0.22 deleterious(0) possibly_damaging(0.547) TCGA-78-7542-01 5 52096935 52096935 A G PELO Missense_Mutation p.N236S 0.08 tolerated(0.09) possibly_damaging(0.596) TCGA-78-7542-01 5 5460982 5460982 G T KIAA0947 Missense_Mutation p.R512I 0.18 tolerated(0.13) benign(0.009) TCGA-78-7542-01 5 75886333 75886333 G A IQGAP2 Silent p.V247V 0.50 TCGA-78-7542-01 5 79026485 79026485 G T CMYA5 Nonsense_Mutation p.E633* 0.48 TCGA-78-7542-01 5 82808047 82808047 G A VCAN Missense_Mutation p.D292N 0.14 deleterious(0) probably_damaging(1) TCGA-78-7542-01 5 82834788 82834788 C A VCAN Missense_Mutation p.P1989H 0.40 deleterious(0.01) possibly_damaging(0.885) TCGA-78-7542-01 5 82836357 82836357 A T VCAN Missense_Mutation p.Y2512F 0.15 tolerated(0.29) possibly_damaging(0.709) TCGA-78-7542-01 5 82837339 82837340 AC - VCAN Frame_Shift_Del p.T2841Rfs*25 0.08 TCGA-78-7542-01 6 100390892 100390892 C A MCHR2 Missense_Mutation p.V174F 0.49 deleterious(0) probably_damaging(1) TCGA-78-7542-01 6 107655415 107655415 C G PDSS2 Missense_Mutation p.G140R 0.20 deleterious(0) probably_damaging(0.993) TCGA-78-7542-01 6 110301337 110301337 G T GPR6 Missense_Mutation p.W341L 0.38 tolerated(0.45) benign(0.095) TCGA-78-7542-01 6 131944574 131944574 C A MED23 Missense_Mutation p.D105Y 0.45 deleterious(0.02) benign(0.005) TCGA-78-7542-01 6 149699609 149699609 G T TAB2 Missense_Mutation p.Q186H 0.39 tolerated(0.06) probably_damaging(0.995) TCGA-78-7542-01 6 152949442 152949442 G T SYNE1 Silent p.R9R 0.34 TCGA-78-7542-01 6 159420896 159420896 G C RSPH3 Missense_Mutation p.A38G 0.31 tolerated_low_confidence(0.44) benign(0.001) TCGA-78-7542-01 6 24437453 24437453 G A GPLD1 Silent p.Y695Y 0.11 TCGA-78-7542-01 6 26158542 26158542 G T HIST1H2BD Missense_Mutation p.V49F 0.10 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-78-7542-01 6 26250492 26250492 G A HIST1H3F Silent p.H114H 0.11 TCGA-78-7542-01 6 26431818 26431818 A T BTN2A3P RNA 0.20 TCGA-78-7542-01 6 30539252 30539252 A G ABCF1 5'UTR 0.40 TCGA-78-7542-01 6 31079656 31079656 T A C6orf15 Silent p.T160T 0.46 TCGA-78-7542-01 6 311936 311936 C A DUSP22 Missense_Mutation p.H38N 0.09 deleterious(0) probably_damaging(1) TCGA-78-7542-01 6 31928518 31928518 G T SKIV2L Splice_Site p.X182_splice 0.34 TCGA-78-7542-01 6 32362690 32362690 C A BTNL2 Missense_Mutation p.M397I 0.35 tolerated(0.21) benign(0.11) TCGA-78-7542-01 6 38980313 38980313 C T DNAH8 Silent p.F4321F 0.36 TCGA-78-7542-01 6 41739065 41739065 C A FRS3 Missense_Mutation p.Q257H 0.39 tolerated(0.14) possibly_damaging(0.758) TCGA-78-7542-01 6 42891048 42891048 G T PTCRA Missense_Mutation p.E114D 0.14 tolerated(0.21) benign(0.046) TCGA-78-7542-01 6 42891049 42891049 G T PTCRA Missense_Mutation p.G115C 0.14 deleterious(0.01) possibly_damaging(0.763) TCGA-78-7542-01 6 50011327 50011327 T A DEFB112 Silent p.V101V 0.42 TCGA-78-7542-01 6 53363469 53363469 T C GCLC 3'UTR 0.24 TCGA-78-7542-01 6 56846716 56846716 G A BEND6 Missense_Mutation p.M36I 0.22 tolerated_low_confidence(0.33) benign(0) TCGA-78-7542-01 6 7365746 7365746 G T CAGE1 Silent p.A716A 0.34 TCGA-78-7542-01 6 75818835 75818835 A T COL12A1 Missense_Mutation p.Y2667N 0.42 benign(0.118) TCGA-78-7542-01 6 79577205 79577205 T C IRAK1BP1 5'UTR 0.42 TCGA-78-7542-01 7 100350269 100350269 G T ZAN Missense_Mutation p.M847I 0.46 unknown(0) TCGA-78-7542-01 7 103191515 103191515 C T RELN Missense_Mutation p.G2101R 0.43 deleterious(0) probably_damaging(0.999) TCGA-78-7542-01 7 115580807 115580807 G T TFEC Missense_Mutation p.A281D 0.28 tolerated(0.3) possibly_damaging(0.833) TCGA-78-7542-01 7 134250297 134250297 G T AKR1B15 Intron 0.44 TCGA-78-7542-01 7 137341230 137341230 G A DGKI Silent p.C221C 0.49 TCGA-78-7542-01 7 141491094 141491094 G A TAS2R5 3'UTR 0.36 TCGA-78-7542-01 7 142499062 142499062 G A TRBC2 Silent p.R113R 0.28 TCGA-78-7542-01 7 142637441 142637441 C A C7orf34 Missense_Mutation p.Q71K 0.44 deleterious(0.03) possibly_damaging(0.486) TCGA-78-7542-01 7 143771391 143771391 T G OR2A25 Missense_Mutation p.F27V 0.08 deleterious(0) benign(0.14) TCGA-78-7542-01 7 15405839 15405839 C A AGMO Silent p.S361S 0.35 TCGA-78-7542-01 7 1855719 1855719 T C MAD1L1 Missense_Mutation p.Q715R 0.18 deleterious(0) probably_damaging(0.997) TCGA-78-7542-01 7 2259031 2259031 T A MAD1L1 Missense_Mutation p.M178L 0.21 tolerated(0.42) benign(0.004) TCGA-78-7542-01 7 27140246 27140246 C G HOXA2 3'UTR 0.39 TCGA-78-7542-01 7 33054364 33054364 G T NT5C3A Missense_Mutation p.S330Y 0.13 deleterious(0) benign(0.258) TCGA-78-7542-01 7 4815325 4815325 C T AP5Z1 5'UTR 0.19 TCGA-78-7542-01 7 5104718 5104718 G T RBAK Missense_Mutation p.C544F 0.28 deleterious(0) probably_damaging(0.999) TCGA-78-7542-01 7 6204414 6204414 G A CYTH3 3'UTR 0.06 TCGA-78-7542-01 7 86416308 86416308 G T GRM3 Missense_Mutation p.M400I 0.50 tolerated(0.13) benign(0.147) TCGA-78-7542-01 8 10480667 10480667 C A RP1L1 Missense_Mutation p.E15D 0.51 possibly_damaging(0.889) TCGA-78-7542-01 8 105367256 105367256 C G DCSTAMP Missense_Mutation p.S394C 0.24 deleterious(0) probably_damaging(0.997) TCGA-78-7542-01 8 113301716 113301716 T A CSMD3 Missense_Mutation p.E3009V 0.35 deleterious(0.04) possibly_damaging(0.51) TCGA-78-7542-01 8 13357463 13357463 A T DLC1 Missense_Mutation p.L40M 0.36 tolerated_low_confidence(0.12) benign(0.178) TCGA-78-7542-01 8 139145008 139145008 A T FAM135B Missense_Mutation p.L1350Q 0.25 deleterious(0) probably_damaging(0.984) TCGA-78-7542-01 8 139164809 139164809 G T FAM135B Missense_Mutation p.P637T 0.29 deleterious(0) possibly_damaging(0.662) TCGA-78-7542-01 8 139706771 139706771 G T COL22A1 Missense_Mutation p.Q894K 0.12 probably_damaging(0.951) TCGA-78-7542-01 8 21890716 21890716 A T NPM2 Missense_Mutation p.S116C 0.37 tolerated(0.07) probably_damaging(0.95) TCGA-78-7542-01 8 21978725 21978725 A T HR Silent p.A740A 0.47 TCGA-78-7542-01 8 3565957 3565957 C A CSMD1 Nonsense_Mutation p.G330* 0.34 TCGA-78-7542-01 8 38006204 38006204 G T STAR Missense_Mutation p.P45T 0.23 deleterious(0.03) benign(0.097) TCGA-78-7542-01 8 51314833 51314833 C A SNTG1 Missense_Mutation p.L31I 0.31 deleterious(0.02) possibly_damaging(0.831) TCGA-78-7542-01 8 54906316 54906316 C T TCEA1 Splice_Site p.X78_splice 0.31 TCGA-78-7542-01 8 69445345 69445345 G A C8orf34 Missense_Mutation p.E356K 0.06 tolerated(0.1) probably_damaging(0.954) TCGA-78-7542-01 8 71619241 71619241 G T XKR9 Nonsense_Mutation p.E116* 0.43 TCGA-78-7542-01 8 73848718 73848718 C A KCNB2 Silent p.T376T 0.31 TCGA-78-7542-01 8 73849039 73849039 C T KCNB2 Silent p.D483D 0.31 TCGA-78-7542-01 8 77763230 77763230 C A ZFHX4 Nonsense_Mutation p.S1358* 0.24 TCGA-78-7542-01 8 95541541 95541541 G A KIAA1429 Missense_Mutation p.H213Y 0.06 tolerated(0.12) benign(0.126) TCGA-78-7542-01 9 103046619 103046619 A T INVS Missense_Mutation p.N601I 0.44 deleterious(0.01) benign(0.008) TCGA-78-7542-01 9 119124912 119124912 C T PAPPA Silent p.T1463T 0.07 TCGA-78-7542-01 9 125154739 125154739 G T PTGS1 Missense_Mutation p.K572N 0.49 tolerated(0.06) benign(0.103) TCGA-78-7542-01 9 135374887 135374887 C A C9orf171 Missense_Mutation p.R178S 0.43 deleterious(0.03) possibly_damaging(0.88) TCGA-78-7542-01 9 136521703 136521703 C A DBH Missense_Mutation p.T498K 0.09 deleterious(0) possibly_damaging(0.903) TCGA-78-7542-01 9 139911474 139911474 C A ABCA2 Missense_Mutation p.V886L 0.06 tolerated(0.21) possibly_damaging(0.493) TCGA-78-7542-01 9 140938287 140938287 G A CACNA1B Silent p.V1116V 0.13 TCGA-78-7542-01 9 35237721 35237723 ACA T UNC13B Frame_Shift_Del p.T98Ffs*11 0.31 TCGA-78-7542-01 9 37732369 37732369 G T FRMPD1 Silent p.A309A 0.30 TCGA-78-7542-01 9 37740320 37740320 G A FRMPD1 Missense_Mutation p.G599S 0.06 deleterious(0.01) probably_damaging(0.984) TCGA-78-7542-01 9 43625500 43625500 G T SPATA31A6 Silent p.R1063R 0.24 TCGA-78-7542-01 9 43884979 43884979 C A CNTNAP3B Missense_Mutation p.H758N 0.17 deleterious(0.02) probably_damaging(0.979) TCGA-78-7542-01 9 6610267 6610267 G A GLDC Missense_Mutation p.T187I 0.53 deleterious(0) probably_damaging(0.974) TCGA-78-7542-01 9 70177755 70177755 C A FOXD4L5 Missense_Mutation p.G77C 0.04 deleterious(0.04) possibly_damaging(0.9) TCGA-78-7542-01 9 79323771 79323771 T C PRUNE2 Missense_Mutation p.D1140G 0.22 tolerated(0.3) probably_damaging(0.992) TCGA-78-7542-01 9 84606718 84606718 A T SPATA31D1 Missense_Mutation p.N445Y 0.09 deleterious(0.01) probably_damaging(0.946) TCGA-78-7542-01 9 85950556 85950556 T A FRMD3 Splice_Site p.X158_splice 0.19 TCGA-78-7542-01 X 106083313 106083313 A G TBC1D8B Missense_Mutation p.I463M 0.69 tolerated(0.14) probably_damaging(0.914) TCGA-78-7542-01 X 107978467 107978467 C A IRS4 Missense_Mutation p.G370C 0.72 deleterious(0) probably_damaging(1) TCGA-78-7542-01 X 114082672 114082672 G T HTR2C Silent p.R152R 0.72 TCGA-78-7542-01 X 128887222 128887222 C T XPNPEP2 Missense_Mutation p.H369Y 0.72 deleterious(0) probably_damaging(0.967) TCGA-78-7542-01 X 129147055 129147055 G - BCORL1 Frame_Shift_Del p.N104Tfs*12 0.44 TCGA-78-7542-01 X 132160222 132160222 G T USP26 Missense_Mutation p.P676H 0.72 tolerated(0.13) benign(0.377) TCGA-78-7542-01 X 132160223 132160223 G T USP26 Missense_Mutation p.P676T 0.74 tolerated(0.26) benign(0.406) TCGA-78-7542-01 X 138633376 138633376 C A F9 Silent p.R226R 0.66 TCGA-78-7542-01 X 140984971 140984971 C A MAGEC3 Missense_Mutation p.P476H 0.62 deleterious(0) possibly_damaging(0.869) TCGA-78-7542-01 X 144329156 144329156 G T SPANXN1 Missense_Mutation p.C17F 0.60 deleterious(0) probably_damaging(0.958) TCGA-78-7542-01 X 144905599 144905599 C T SLITRK2 Silent p.I552I 0.30 TCGA-78-7542-01 X 147062998 147062998 C A FMR1NB Missense_Mutation p.L26M 0.67 tolerated(0.12) benign(0.102) TCGA-78-7542-01 X 148664812 148664812 C A MAGEA9B Silent p.P8P 0.34 TCGA-78-7542-01 X 151817739 151817739 C A GABRQ Missense_Mutation p.L185M 0.66 tolerated(1) benign(0.329) TCGA-78-7542-01 X 152159632 152159632 C A PNMA5 Missense_Mutation p.G171C 0.76 deleterious(0) probably_damaging(0.999) TCGA-78-7542-01 X 153036815 153036815 C A PLXNB3 Silent p.T791T 0.70 TCGA-78-7542-01 X 155004046 155004046 C T SPRY3 Silent p.N171N 0.08 TCGA-78-7542-01 X 22291122 22291123 - T ZNF645 Frame_Shift_Ins p.A6Cfs*3 0.41 TCGA-78-7542-01 X 34962320 34962320 C A FAM47B Missense_Mutation p.H458N 0.40 tolerated(0.14) benign(0.036) TCGA-78-7542-01 X 37653054 37653054 G A CYBB Silent p.K158K 0.50 TCGA-78-7542-01 X 65423229 65423229 G T HEPH Missense_Mutation p.A755S 0.67 deleterious(0.01) benign(0.15) TCGA-78-7542-01 X 70783045 70783045 C T OGT Silent p.G738G 0.41 TCGA-78-7542-01 X 83127989 83127989 C A CYLC1 Nonsense_Mutation p.Y91* 0.40 TCGA-78-7633-01 10 106974237 106974237 C G SORCS3 Missense_Mutation p.L805V 0.39 tolerated(1) benign(0.004) TCGA-78-7633-01 10 13735983 13735983 C A FRMD4A Silent p.T344T 0.48 TCGA-78-7633-01 10 17746987 17746987 G T STAM Missense_Mutation p.G340V 0.26 deleterious(0) possibly_damaging(0.596) TCGA-78-7633-01 10 38658886 38658887 - T HSD17B7P2 RNA 0.32 TCGA-78-7633-01 10 61946575 61946575 G A ANK3 Silent p.T661T 0.36 TCGA-78-7633-01 10 72434362 72434362 A T ADAMTS14 Missense_Mutation p.S45C 0.38 deleterious(0.02) probably_damaging(1) TCGA-78-7633-01 10 72434363 72434363 G T ADAMTS14 Missense_Mutation p.S45I 0.39 deleterious(0.03) probably_damaging(1) TCGA-78-7633-01 10 73767095 73767095 C T CHST3 Silent p.G102G 0.70 TCGA-78-7633-01 10 94828287 94828287 G A CYP26C1 Missense_Mutation p.V468M 0.29 tolerated(0.1) benign(0.259) TCGA-78-7633-01 11 18048162 18048162 A T TPH1 Silent p.G226G 0.43 TCGA-78-7633-01 11 5344806 5344806 G C OR51B2 Missense_Mutation p.S241C 0.32 deleterious(0) probably_damaging(1) TCGA-78-7633-01 11 55322011 55322011 G T OR4C15 Nonsense_Mutation p.E77* 0.41 TCGA-78-7633-01 11 55999867 55999867 C T OR5T2 Silent p.L265L 0.36 TCGA-78-7633-01 11 56020505 56020505 G T OR5T3 Missense_Mutation p.G277V 0.36 tolerated(0.12) benign(0.344) TCGA-78-7633-01 11 6942250 6942250 G T OR2D3 Missense_Mutation p.L6F 0.32 tolerated_low_confidence(0.3) benign(0.001) TCGA-78-7633-01 11 72291952 72291952 T C PDE2A Missense_Mutation p.N704S 0.35 tolerated(0.07) possibly_damaging(0.659) TCGA-78-7633-01 12 46215214 46215214 T - ARID2 Frame_Shift_Del p.S218Pfs*74 0.09 TCGA-78-7633-01 12 52710805 52710805 C A KRT83 Missense_Mutation p.E251D 0.28 deleterious(0) probably_damaging(0.914) TCGA-78-7633-01 12 54905735 54905735 G A NCKAP1L Missense_Mutation p.G263R 0.38 deleterious(0) probably_damaging(0.998) TCGA-78-7633-01 13 37678501 37678501 C A CSNK1A1L Missense_Mutation p.W298L 0.30 deleterious_low_confidence(0.01) benign(0.073) TCGA-78-7633-01 13 58209093 58209093 C A PCDH17 Missense_Mutation p.P805T 0.26 tolerated(1) possibly_damaging(0.758) TCGA-78-7633-01 14 103192898 103192898 G A RCOR1 3'UTR 0.41 TCGA-78-7633-01 14 21899006 21899006 C A CHD8 Missense_Mutation p.G266V 0.21 tolerated_low_confidence(0.13) benign(0.082) TCGA-78-7633-01 14 22392612 22392612 T C TRAV14DV4 Silent p.Y45Y 0.39 TCGA-78-7633-01 14 23596374 23596374 G A SLC7A8 3'UTR 0.36 TCGA-78-7633-01 14 23598874 23598874 G A SLC7A8 Silent p.I416I 0.36 TCGA-78-7633-01 14 64989933 64989933 G C ZBTB1 Missense_Mutation p.E571Q 0.37 deleterious(0.04) probably_damaging(0.986) TCGA-78-7633-01 14 91772124 91772124 C A CCDC88C Missense_Mutation p.Q1114H 0.19 deleterious(0) probably_damaging(0.999) TCGA-78-7633-01 15 25924557 25924557 T C ATP10A Silent p.S1477S 0.30 TCGA-78-7633-01 15 27772650 27772650 G T GABRG3 Missense_Mutation p.V313L 0.37 tolerated(0.12) possibly_damaging(0.611) TCGA-78-7633-01 15 42168845 42168845 C A SPTBN5 Silent p.T1284T 0.64 TCGA-78-7633-01 15 44066401 44066409 CCGAACTCT - ELL3 In_Frame_Del p.V338_R340del 0.29 TCGA-78-7633-01 15 67473668 67473668 G T SMAD3 Missense_Mutation p.A250S 0.30 tolerated(0.12) probably_damaging(0.971) TCGA-78-7633-01 16 20952726 20952726 T C DNAH3 Missense_Mutation p.N3884S 0.32 deleterious(0) probably_damaging(1) TCGA-78-7633-01 16 30997441 30997441 G A HSD3B7 Missense_Mutation p.A80T 0.18 tolerated(0.07) benign(0.038) TCGA-78-7633-01 16 31341863 31341863 G T ITGAM Missense_Mutation p.E1072D 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-78-7633-01 16 71423911 71423911 G C CALB2 3'UTR 0.47 TCGA-78-7633-01 16 87677922 87677922 C G JPH3 Missense_Mutation p.S147R 0.34 deleterious(0) probably_damaging(0.924) TCGA-78-7633-01 16 90001774 90001774 G T TUBB3 Silent p.P305P 0.31 TCGA-78-7633-01 17 10427914 10427914 G T MYH2 Missense_Mutation p.R1682S 0.35 deleterious(0.01) probably_damaging(0.966) TCGA-78-7633-01 17 12656348 12656348 T C MYOCD Silent p.F581F 0.34 TCGA-78-7633-01 17 21730899 21730899 G C UBBP4 Silent p.L67L 0.28 TCGA-78-7633-01 17 3788921 3788921 C A CAMKK1 Missense_Mutation p.A21S 0.27 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-78-7633-01 17 3788922 3788922 C A CAMKK1 Silent p.V20V 0.27 TCGA-78-7633-01 17 65337022 65337022 C T PSMD12 Missense_Mutation p.M436I 0.24 deleterious(0.04) benign(0.075) TCGA-78-7633-01 17 73915810 73915810 G A FBF1 Missense_Mutation p.R678C 0.58 deleterious(0) possibly_damaging(0.736) TCGA-78-7633-01 18 13885348 13885348 G T MC2R Missense_Mutation p.A57E 0.35 deleterious(0) benign(0.032) TCGA-78-7633-01 18 54688052 54688052 A G WDR7 Missense_Mutation p.N1414S 0.33 tolerated(0.42) possibly_damaging(0.628) TCGA-78-7633-01 18 56247275 56247275 C A ALPK2 Missense_Mutation p.G245C 0.31 deleterious(0) probably_damaging(0.937) TCGA-78-7633-01 19 10602581 10602581 C A KEAP1 Missense_Mutation p.G333C 0.56 deleterious(0) probably_damaging(1) TCGA-78-7633-01 19 13136190 13136190 G T NFIX Missense_Mutation p.R128L 0.66 deleterious(0) probably_damaging(0.999) TCGA-78-7633-01 19 31025796 31025796 C A ZNF536 Missense_Mutation p.P738Q 0.34 tolerated(0.1) benign(0.016) TCGA-78-7633-01 19 35657273 35657273 G T FXYD5 Intron 0.38 TCGA-78-7633-01 19 38810852 38810852 G A KCNK6 Missense_Mutation p.D88N 0.33 tolerated(0.24) benign(0.037) TCGA-78-7633-01 19 38960061 38960061 T C RYR1 Missense_Mutation p.F1225L 0.35 benign(0.147) TCGA-78-7633-01 19 50103069 50103069 G A PRR12 Missense_Mutation p.D1407N 0.33 possibly_damaging(0.728) TCGA-78-7633-01 19 50266500 50266500 G T TSKS Missense_Mutation p.A2E 0.20 deleterious(0) probably_damaging(0.999) TCGA-78-7633-01 19 53770889 53770889 C A VN1R4 Missense_Mutation p.M10I 0.29 tolerated(0.58) benign(0.009) TCGA-78-7633-01 19 5456253 5456253 G C ZNRF4 Missense_Mutation p.V251L 0.56 tolerated(0.52) benign(0.057) TCGA-78-7633-01 19 55417918 55417918 T A NCR1 Missense_Mutation p.H36Q 0.26 deleterious(0.03) benign(0.004) TCGA-78-7633-01 19 55831931 55831931 G A TMEM150B Silent p.Y41Y 0.35 TCGA-78-7633-01 19 55879690 55879690 C T IL11 Missense_Mutation p.R106Q 0.27 tolerated(0.11) benign(0.041) TCGA-78-7633-01 19 9090468 9090468 G T MUC16 Silent p.S449S 0.59 TCGA-78-7633-01 1 104093592 104093592 G T RNPC3 Missense_Mutation p.R464L 0.32 deleterious(0) probably_damaging(0.999) TCGA-78-7633-01 1 114523502 114523502 C G OLFML3 Intron 0.44 TCGA-78-7633-01 1 115829120 115829120 G A NGF Silent p.D99D 0.32 TCGA-78-7633-01 1 145290500 145290500 C A NBPF10 5'Flank 0.04 TCGA-78-7633-01 1 150241220 150241220 G A C1orf54 Intron 0.32 TCGA-78-7633-01 1 157740395 157740395 G A FCRL2 Silent p.C38C 0.17 TCGA-78-7633-01 1 158436014 158436014 C A OR10K1 Silent p.I221I 0.24 TCGA-78-7633-01 1 158687509 158687509 G T OR6K3 Missense_Mutation p.Q133K 0.18 deleterious(0) benign(0.028) TCGA-78-7633-01 1 159036024 159036024 G T AIM2 Silent p.P164P 0.58 TCGA-78-7633-01 1 161130689 161130689 G A USP21 Missense_Mutation p.G87R 0.54 deleterious_low_confidence(0.02) possibly_damaging(0.601) TCGA-78-7633-01 1 167874234 167874234 A C ADCY10 Missense_Mutation p.S49A 0.14 deleterious(0) probably_damaging(0.984) TCGA-78-7633-01 1 176905384 176905384 G T ASTN1 Intron 0.67 TCGA-78-7633-01 1 196311313 196311313 T C KCNT2 Silent p.R483R 0.58 TCGA-78-7633-01 1 205031637 205031637 C T CNTN2 Nonsense_Mutation p.Q394* 0.17 TCGA-78-7633-01 1 238045713 238045713 A C ZP4 3'UTR 0.45 TCGA-78-7633-01 1 247654619 247654619 G A OR2W5 RNA 0.57 TCGA-78-7633-01 1 35578842 35578842 A - ZMYM1 Frame_Shift_Del p.D473Mfs*48 0.13 TCGA-78-7633-01 1 62718834 62718834 T C KANK4 Missense_Mutation p.M863V 0.38 deleterious(0.02) benign(0.008) TCGA-78-7633-01 1 85331206 85331206 G C LPAR3 Missense_Mutation p.L200V 0.42 tolerated(0.56) benign(0.003) TCGA-78-7633-01 1 86913287 86913287 C G CLCA2 Missense_Mutation p.P604A 0.40 deleterious(0.03) possibly_damaging(0.741) TCGA-78-7633-01 1 89650951 89650951 C T GBP4 Missense_Mutation p.G637S 0.35 tolerated_low_confidence(1) benign(0.009) TCGA-78-7633-01 21 31768808 31768808 G C KRTAP13-1 Missense_Mutation p.C135S 0.27 tolerated(0.5) benign(0.057) TCGA-78-7633-01 21 31874303 31874303 C A KRTAP19-5 Missense_Mutation p.G36C 0.34 deleterious_low_confidence(0.01) unknown(0) TCGA-78-7633-01 21 34721527 34721527 G A IFNAR1 Missense_Mutation p.V307I 0.28 tolerated(0.05) benign(0.115) TCGA-78-7633-01 21 42080524 42080524 G T DSCAM Missense_Mutation p.R73S 0.28 deleterious(0) probably_damaging(1) TCGA-78-7633-01 22 16449212 16449212 G T OR11H1 Missense_Mutation p.P198Q 0.45 deleterious(0) probably_damaging(1) TCGA-78-7633-01 22 42575679 42575679 G T TCF20 Silent p.A1895A 0.36 TCGA-78-7633-01 2 144245031 144245031 C G ARHGAP15 Missense_Mutation p.L265V 0.55 deleterious(0) benign(0.109) TCGA-78-7633-01 2 161137837 161137837 A C RBMS1 Missense_Mutation p.I313M 0.45 tolerated(0.07) possibly_damaging(0.56) TCGA-78-7633-01 2 213872195 213872195 C A IKZF2 Missense_Mutation p.M490I 0.56 deleterious(0) benign(0.11) TCGA-78-7633-01 2 215820069 215820069 A T ABCA12 Missense_Mutation p.W2084R 0.43 deleterious(0) probably_damaging(1) TCGA-78-7633-01 2 231372747 231372747 G T SP100 Splice_Site p.X684_splice 0.42 TCGA-78-7633-01 2 27700939 27700939 C T IFT172 Missense_Mutation p.G364R 0.27 deleterious(0) probably_damaging(0.972) TCGA-78-7633-01 3 147108894 147108894 C A ZIC4 Silent p.T326T 0.19 TCGA-78-7633-01 3 160146643 160146643 A T SMC4 Missense_Mutation p.Q903L 0.42 deleterious(0) possibly_damaging(0.824) TCGA-78-7633-01 3 172353764 172353764 C A NCEH1 Missense_Mutation p.R224I 0.32 deleterious(0) probably_damaging(0.961) TCGA-78-7633-01 4 134071419 134071419 G T PCDH10 Missense_Mutation p.G42C 0.26 deleterious(0) probably_damaging(1) TCGA-78-7633-01 4 40778252 40778253 - T NSUN7 Frame_Shift_Ins p.T340Hfs*6 0.22 TCGA-78-7633-01 4 41258944 41258944 T C UCHL1 5'UTR 0.18 TCGA-78-7633-01 4 47514700 47514700 G T ATP10D Missense_Mutation p.G48V 0.40 deleterious(0.01) possibly_damaging(0.594) TCGA-78-7633-01 4 5696066 5696066 C A EVC2 Missense_Mutation p.R149L 0.28 tolerated(0.2) benign(0.076) TCGA-78-7633-01 4 5696067 5696067 G T EVC2 Missense_Mutation p.R149S 0.30 tolerated(0.2) benign(0.003) TCGA-78-7633-01 4 68501182 68501182 A - UBA6 Frame_Shift_Del p.Y611Tfs*17 0.34 TCGA-78-7633-01 5 139193133 139193133 C T PSD2 Missense_Mutation p.A204V 0.45 tolerated(0.07) benign(0.014) TCGA-78-7633-01 5 140076937 140076937 G T HARS2 Silent p.V381V 0.16 TCGA-78-7633-01 5 140182996 140182996 G T PCDHA3 Silent p.T738T 0.23 TCGA-78-7633-01 5 140615600 140615600 C G PCDHB18 RNA 0.20 TCGA-78-7633-01 5 156375427 156375427 C A TIMD4 Missense_Mutation p.A282S 0.53 tolerated(0.44) benign(0.011) TCGA-78-7633-01 5 163446 163446 G A PLEKHG4B Missense_Mutation p.E731K 0.42 deleterious(0.03) probably_damaging(0.942) TCGA-78-7633-01 5 168096868 168096868 T C SLIT3 Missense_Mutation p.H1419R 0.25 tolerated(0.11) benign(0.003) TCGA-78-7633-01 5 172659891 172659891 G T NKX2-5 Missense_Mutation p.A219E 0.39 deleterious(0) probably_damaging(0.983) TCGA-78-7633-01 5 23509089 23509089 G T PRDM9 5'UTR 0.55 TCGA-78-7633-01 5 32059357 32059357 G A PDZD2 Missense_Mutation p.G738E 0.30 deleterious(0) probably_damaging(1) TCGA-78-7633-01 5 75858378 75858378 G A IQGAP2 Splice_Site p.X101_splice 0.53 TCGA-78-7633-01 6 26385353 26385353 C T BTN2A2 Missense_Mutation p.R69W 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-78-7633-01 6 31914202 31914202 G C CFB Silent p.L541L 0.17 TCGA-78-7633-01 6 39284685 39284685 C G KCNK16 Silent p.L178L 0.22 TCGA-78-7633-01 6 55990417 55990417 C A COL21A1 Missense_Mutation p.G533V 0.36 tolerated(0.08) probably_damaging(1) TCGA-78-7633-01 6 57512584 57512584 C A PRIM2 3'UTR 0.04 TCGA-78-7633-01 7 111977846 111977846 G A ZNF277 Missense_Mutation p.A311T 0.26 tolerated(0.43) benign(0.016) TCGA-78-7633-01 7 140481402 140481402 C A BRAF Missense_Mutation p.G469V 0.35 deleterious(0) probably_damaging(0.998) TCGA-78-7633-01 7 140481403 140481403 C A BRAF Nonsense_Mutation p.G469* 0.34 TCGA-78-7633-01 7 34192754 34192754 A T BMPER Missense_Mutation p.I643F 0.32 deleterious(0.05) benign(0.032) TCGA-78-7633-01 7 57200007 57200007 C A ZNF479 Nonsense_Mutation p.G9* 0.35 TCGA-78-7633-01 7 87399978 87399978 C A RUNDC3B Silent p.V254V 0.36 TCGA-78-7633-01 7 91972523 91972523 C T ANKIB1 Missense_Mutation p.P325S 0.39 deleterious(0.04) benign(0.009) TCGA-78-7633-01 7 92760466 92760466 G C SAMD9L 3'UTR 0.25 TCGA-78-7633-01 7 98535407 98535407 A G TRRAP Silent p.P1456P 0.40 TCGA-78-7633-01 8 113314030 113314030 C G CSMD3 Missense_Mutation p.R2811T 0.32 tolerated(0.13) benign(0.207) TCGA-78-7633-01 8 124340444 124340444 T A ATAD2 Missense_Mutation p.E1285V 0.33 deleterious(0.04) benign(0.051) TCGA-78-7633-01 8 56436672 56436672 C - XKR4 Frame_Shift_Del p.R614Efs*8 0.29 TCGA-78-7633-01 8 57228804 57228804 G A SDR16C5 Missense_Mutation p.R35W 0.34 deleterious(0) possibly_damaging(0.487) TCGA-78-7633-01 8 72952008 72952008 C G TRPA1 Missense_Mutation p.E696Q 0.32 deleterious(0) possibly_damaging(0.701) TCGA-78-7633-01 8 87060816 87060816 A T PSKH2 Missense_Mutation p.S345T 0.37 deleterious(0.01) benign(0.115) TCGA-78-7633-01 9 104153117 104153117 T C MRPL50 Silent p.P36P 0.44 TCGA-78-7633-01 9 120474686 120474686 G T TLR4 Nonsense_Mutation p.E94* 0.30 TCGA-78-7633-01 X 1419396 1419396 G T CSF2RA Missense_Mutation p.G275C 0.35 deleterious(0) probably_damaging(1) TCGA-78-7633-01 X 69647191 69647191 G C GDPD2 Missense_Mutation p.D272H 0.50 deleterious(0) probably_damaging(1) TCGA-78-7633-01 Y 21870790 21870790 C G KDM5D Missense_Mutation p.A1018P 0.68 tolerated(0.12) probably_damaging(0.968) TCGA-78-8640-01 10 103347097 103347097 C G POLL Missense_Mutation p.L7F 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.461) TCGA-78-8640-01 10 103990789 103990789 C T PITX3 Missense_Mutation p.G131S 0.32 tolerated(0.24) probably_damaging(0.934) TCGA-78-8640-01 10 105199500 105199500 C G PDCD11 Intron 0.17 TCGA-78-8640-01 10 108337197 108337197 C T SORCS1 Intron 0.13 TCGA-78-8640-01 10 112361869 112361869 C T SMC3 Missense_Mutation p.S1013L 0.20 tolerated(0.09) possibly_damaging(0.807) TCGA-78-8640-01 10 112362320 112362320 G T SMC3 Missense_Mutation p.S1065I 0.15 tolerated(0.14) possibly_damaging(0.474) TCGA-78-8640-01 10 118385457 118385457 C G PNLIPRP2 Missense_Mutation p.L69V 0.19 tolerated(0.28) benign(0.001) TCGA-78-8640-01 10 119003664 119003664 G T SLC18A2 Missense_Mutation p.A102S 0.14 tolerated(1) benign(0.003) TCGA-78-8640-01 10 12039734 12039734 T C UPF2 Missense_Mutation p.N594S 0.13 tolerated(0.09) possibly_damaging(0.74) TCGA-78-8640-01 10 124214313 124214313 C G ARMS2 Missense_Mutation p.L24V 0.16 tolerated_low_confidence(0.15) possibly_damaging(0.801) TCGA-78-8640-01 10 124351968 124351968 C A DMBT1 Missense_Mutation p.A786D 0.17 deleterious(0) unknown(0) TCGA-78-8640-01 10 129903908 129903908 G C MKI67 Missense_Mutation p.P2066A 0.19 tolerated(0.15) probably_damaging(0.942) TCGA-78-8640-01 10 15107592 15107592 T C OLAH Missense_Mutation p.W191R 0.26 tolerated(0.99) benign(0.005) TCGA-78-8640-01 10 15600189 15600189 G T ITGA8 Missense_Mutation p.P884T 0.09 tolerated(0.43) benign(0.016) TCGA-78-8640-01 10 15714731 15714731 T C ITGA8 Missense_Mutation p.S232G 0.16 tolerated(0.49) benign(0.003) TCGA-78-8640-01 10 29747233 29747233 G T SVIL Nonsense_Mutation p.Y2196* 0.20 TCGA-78-8640-01 10 29821566 29821566 T C SVIL Missense_Mutation p.K577R 0.20 tolerated(0.35) benign(0.003) TCGA-78-8640-01 10 31809297 31809297 A T ZEB1 Missense_Mutation p.Q346L 0.23 deleterious(0) benign(0.298) TCGA-78-8640-01 10 52566525 52566525 T A A1CF Silent p.A583A 0.15 TCGA-78-8640-01 10 60154788 60154788 G C TFAM Missense_Mutation p.R232P 0.10 deleterious(0) probably_damaging(0.998) TCGA-78-8640-01 10 6263607 6263607 G T PFKFB3 Missense_Mutation p.V328F 0.20 probably_damaging(0.942) TCGA-78-8640-01 10 6553114 6553114 G - PRKCQ Frame_Shift_Del p.P54Hfs*21 0.12 TCGA-78-8640-01 10 75849105 75849105 C T VCL Nonsense_Mutation p.Q392* 0.20 TCGA-78-8640-01 10 88415982 88415982 C A OPN4 Missense_Mutation p.T72N 0.22 deleterious(0) probably_damaging(0.921) TCGA-78-8640-01 10 93378 93378 C A TUBB8 Missense_Mutation p.R318S 0.15 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-78-8640-01 10 99667822 99667822 G A CRTAC1 Silent p.F266F 0.11 TCGA-78-8640-01 11 100211204 100211205 TG C CNTN5 Frame_Shift_Del p.W914Rfs*24 0.41 TCGA-78-8640-01 11 104905008 104905008 C A CASP1 Missense_Mutation p.Q67H 0.15 tolerated(0.12) possibly_damaging(0.663) TCGA-78-8640-01 11 1093935 1093935 T A MUC2 Splice_Site p.X1918_splice 0.15 TCGA-78-8640-01 11 113650517 113650517 T A CLDN25 5'UTR 0.18 TCGA-78-8640-01 11 113856784 113856785 - C HTR3A Frame_Shift_Ins p.D205Rfs*29 0.26 TCGA-78-8640-01 11 119217190 119217190 C A MFRP Nonsense_Mutation p.E12* 0.14 TCGA-78-8640-01 11 1213088 1213088 C A MUC5AC RNA 0.12 TCGA-78-8640-01 11 122850143 122850143 G T BSX Missense_Mutation p.F95L 0.08 tolerated(0.16) benign(0.007) TCGA-78-8640-01 11 123814219 123814219 G T OR6T1 Silent p.T109T 0.13 TCGA-78-8640-01 11 124121271 124121271 C T OR8G1 Intron 0.19 TCGA-78-8640-01 11 124754983 124754983 G C ROBO4 Missense_Mutation p.I985M 0.11 tolerated_low_confidence(0.11) benign(0.015) TCGA-78-8640-01 11 1272350 1272350 C A MUC5B Missense_Mutation p.A4747D 0.22 unknown(0) TCGA-78-8640-01 11 128839713 128839713 C G ARHGAP32 Missense_Mutation p.G1785R 0.21 tolerated(0.15) probably_damaging(1) TCGA-78-8640-01 11 132306599 132306599 A T OPCML Missense_Mutation p.S247T 0.12 tolerated(0.23) probably_damaging(0.98) TCGA-78-8640-01 11 134073619 134073619 G C NCAPD3 Silent p.S466S 0.10 TCGA-78-8640-01 11 1492549 1492549 C A MOB2 Nonsense_Mutation p.E156* 0.16 TCGA-78-8640-01 11 18017431 18017431 C G SERGEF Silent p.G178G 0.11 TCGA-78-8640-01 11 18314518 18314518 T C HPS5 Missense_Mutation p.E597G 0.19 tolerated(0.24) benign(0.038) TCGA-78-8640-01 11 20071402 20071402 C A NAV2 Missense_Mutation p.A1487D 0.16 deleterious(0.04) probably_damaging(0.997) TCGA-78-8640-01 11 2337897 2337897 G A TSPAN32 Missense_Mutation p.R240Q 0.17 deleterious(0.04) benign(0.273) TCGA-78-8640-01 11 2424510 2424510 C A TSSC4 Missense_Mutation p.T216N 0.12 deleterious(0) possibly_damaging(0.813) TCGA-78-8640-01 11 28119344 28119346 CTT - KIF18A In_Frame_Del p.E50del 0.14 TCGA-78-8640-01 11 30517017 30517017 G A MPPED2 Missense_Mutation p.T121I 0.19 deleterious(0) possibly_damaging(0.873) TCGA-78-8640-01 11 30974028 30974028 G C DCDC1 Nonsense_Mutation p.Y893* 0.14 TCGA-78-8640-01 11 31327898 31327898 G T DCDC1 Silent p.R158R 0.11 TCGA-78-8640-01 11 40136549 40136549 C A LRRC4C Missense_Mutation p.V432F 0.10 deleterious(0) benign(0.21) TCGA-78-8640-01 11 4104590 4104590 G T STIM1 Missense_Mutation p.G446C 0.21 deleterious(0.01) probably_damaging(0.946) TCGA-78-8640-01 11 4104591 4104591 G T STIM1 Missense_Mutation p.G446V 0.21 deleterious(0) possibly_damaging(0.898) TCGA-78-8640-01 11 4594654 4594654 C T C11orf40 Missense_Mutation p.D64N 0.15 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-78-8640-01 11 47307014 47307014 G T MADD Silent p.L808L 0.21 TCGA-78-8640-01 11 47498939 47498939 C A CELF1 Missense_Mutation p.A294S 0.21 tolerated(0.14) possibly_damaging(0.567) TCGA-78-8640-01 11 48266864 48266864 C - OR4X2 Frame_Shift_Del p.K72Nfs*38 0.13 TCGA-78-8640-01 11 49204729 49204729 C A FOLH1 Nonsense_Mutation p.G298* 0.16 TCGA-78-8640-01 11 5068689 5068689 T C OR52J3 Nonstop_Mutation p.*312Qext*? 0.16 TCGA-78-8640-01 11 5153674 5153674 T A OR52A5 Missense_Mutation p.M67L 0.18 deleterious(0.04) benign(0.005) TCGA-78-8640-01 11 5255395 5255395 C T HBD Silent p.G47G 0.22 TCGA-78-8640-01 11 55111383 55111383 C A OR4A16 Missense_Mutation p.P236H 0.18 deleterious_low_confidence(0.01) benign(0.032) TCGA-78-8640-01 11 55541155 55541155 C A OR5D13 Missense_Mutation p.P81H 0.17 deleterious(0) probably_damaging(0.999) TCGA-78-8640-01 11 55798635 55798635 A G OR5AS1 Silent p.A247A 0.12 TCGA-78-8640-01 11 55798643 55798643 T A OR5AS1 Nonsense_Mutation p.L250* 0.15 TCGA-78-8640-01 11 56113853 56113853 C A OR8K1 Missense_Mutation p.F113L 0.14 deleterious_low_confidence(0.05) benign(0.364) TCGA-78-8640-01 11 56258729 56258729 C A OR5M8 Missense_Mutation p.G40W 0.17 deleterious(0) probably_damaging(0.998) TCGA-78-8640-01 11 56409484 56409484 C A OR5AP2 Silent p.G144G 0.20 TCGA-78-8640-01 11 57069608 57069608 C A TNKS1BP1 Missense_Mutation p.G1592C 0.12 deleterious(0) probably_damaging(1) TCGA-78-8640-01 11 58480264 58480264 G T GLYAT Silent p.L95L 0.17 TCGA-78-8640-01 11 58722369 58722369 G T GLYATL1 Missense_Mutation p.G136C 0.23 deleterious(0.05) probably_damaging(0.981) TCGA-78-8640-01 11 5906320 5906320 C G OR52E4 Silent p.G266G 0.15 TCGA-78-8640-01 11 60198356 60198356 T C MS4A5 Missense_Mutation p.F81L 0.15 tolerated(0.48) benign(0.131) TCGA-78-8640-01 11 60703878 60703878 C G TMEM132A Missense_Mutation p.F858L 0.13 deleterious(0) probably_damaging(0.994) TCGA-78-8640-01 11 60885680 60885680 A C CD5 Missense_Mutation p.K43T 0.17 tolerated(0.05) benign(0.163) TCGA-78-8640-01 11 620375 620375 G C CDHR5 Silent p.L267L 0.17 TCGA-78-8640-01 11 62496497 62496497 C T TTC9C Silent p.L59L 0.16 TCGA-78-8640-01 11 63396867 63396867 T C ATL3 Missense_Mutation p.H517R 0.13 tolerated(0.38) benign(0) TCGA-78-8640-01 11 6477718 6477718 G C TRIM3 Missense_Mutation p.P413R 0.15 deleterious(0) probably_damaging(1) TCGA-78-8640-01 11 67052428 67052428 G T ADRBK1 Nonsense_Mutation p.E589* 0.20 TCGA-78-8640-01 11 67261793 67261793 C T PITPNM1 Silent p.V927V 0.17 TCGA-78-8640-01 11 67864551 67864551 T G CHKA Missense_Mutation p.T133P 0.15 tolerated(0.13) benign(0.105) TCGA-78-8640-01 11 68668016 68668016 C A MRPL21 Missense_Mutation p.G49V 0.12 deleterious(0.01) possibly_damaging(0.777) TCGA-78-8640-01 11 6891795 6891795 C A OR10A2 Silent p.P270P 0.11 TCGA-78-8640-01 11 75139628 75139628 C G KLHL35 Missense_Mutation p.D309H 0.12 deleterious(0) unknown(0) TCGA-78-8640-01 11 85712167 85712167 C - PICALM Frame_Shift_Del p.A310Qfs*7 0.14 TCGA-78-8640-01 11 87029210 87029210 A G TMEM135 Missense_Mutation p.K370R 0.25 tolerated(0.6) benign(0.001) TCGA-78-8640-01 11 88042330 88042330 C A CTSC Splice_Site p.X214_splice 0.12 TCGA-78-8640-01 11 902221 902221 G A CHID1 Missense_Mutation p.T149M 0.17 deleterious(0.01) benign(0.408) TCGA-78-8640-01 11 92523184 92523184 G C FAT3 Missense_Mutation p.E1471Q 0.12 probably_damaging(1) TCGA-78-8640-01 11 94330997 94330997 G T PIWIL4 Missense_Mutation p.E432D 0.11 tolerated(0.12) benign(0.009) TCGA-78-8640-01 12 100042346 100042346 A C FAM71C Missense_Mutation p.N132H 0.22 deleterious(0.02) possibly_damaging(0.516) TCGA-78-8640-01 12 101560366 101560366 G T SLC5A8 Missense_Mutation p.Q478K 0.19 tolerated(0.76) benign(0.001) TCGA-78-8640-01 12 107141292 107141292 C A RFX4 Missense_Mutation p.Q580K 0.16 deleterious_low_confidence(0.05) benign(0.225) TCGA-78-8640-01 12 109838916 109838916 C T MYO1H Missense_Mutation p.H181Y 0.14 deleterious(0.01) probably_damaging(0.966) TCGA-78-8640-01 12 111066760 111066760 A T TCTN1 Intron 0.14 TCGA-78-8640-01 12 111321917 111321917 C A CCDC63 Missense_Mutation p.L313M 0.13 tolerated(0.06) probably_damaging(1) TCGA-78-8640-01 12 11339199 11339199 G T TAS2R42 Silent p.P115P 0.26 TCGA-78-8640-01 12 113537619 113537619 C A RASAL1 3'UTR 0.16 TCGA-78-8640-01 12 116422079 116422079 A T MED13L Silent p.L1479L 0.13 TCGA-78-8640-01 12 117013999 117013999 C G MAP1LC3B2 Missense_Mutation p.N84K 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-78-8640-01 12 121465410 121465410 C A OASL Missense_Mutation p.D290Y 0.12 tolerated(0.05) possibly_damaging(0.907) TCGA-78-8640-01 12 121465411 121465411 C A OASL Missense_Mutation p.E289D 0.10 tolerated(0.3) possibly_damaging(0.697) TCGA-78-8640-01 12 123011488 123011488 C A RSRC2 5'UTR 0.13 TCGA-78-8640-01 12 123011489 123011489 G T RSRC2 5'UTR 0.12 TCGA-78-8640-01 12 13717339 13717339 C T GRIN2B Missense_Mutation p.D945N 0.25 tolerated(0.05) probably_damaging(0.962) TCGA-78-8640-01 12 1943903 1943903 C A LRTM2 3'UTR 0.17 TCGA-78-8640-01 12 20803534 20803534 G A PDE3A Silent p.Q975Q 0.24 TCGA-78-8640-01 12 21327635 21327635 C G SLCO1B1 Missense_Mutation p.F117L 0.36 deleterious(0.03) possibly_damaging(0.666) TCGA-78-8640-01 12 21467596 21467596 T G SLCO1A2 Silent p.I74I 0.23 TCGA-78-8640-01 12 26377295 26377295 A T SSPN Missense_Mutation p.I117F 0.14 tolerated(0.24) benign(0.007) TCGA-78-8640-01 12 28458733 28458734 - T CCDC91 Frame_Shift_Ins p.A88Cfs*22 0.17 TCGA-78-8640-01 12 28459817 28459817 A G CCDC91 Missense_Mutation p.K137R 0.25 tolerated(0.38) probably_damaging(0.945) TCGA-78-8640-01 12 29671540 29671540 C A TMTC1 Missense_Mutation p.G630V 0.28 deleterious(0) probably_damaging(0.999) TCGA-78-8640-01 12 30862919 30862919 A G CAPRIN2 Missense_Mutation p.W1051R 0.22 deleterious(0) probably_damaging(0.98) TCGA-78-8640-01 12 33535308 33535308 G T SYT10 Missense_Mutation p.S449Y 0.07 tolerated(0.69) possibly_damaging(0.865) TCGA-78-8640-01 12 41966167 41966167 C G PDZRN4 Missense_Mutation p.P529R 0.13 tolerated(0.08) possibly_damaging(0.489) TCGA-78-8640-01 12 4854759 4854759 G T GALNT8 Missense_Mutation p.W342L 0.33 deleterious(0) probably_damaging(1) TCGA-78-8640-01 12 49099550 49099550 C A CCNT1 Splice_Site p.X124_splice 0.24 TCGA-78-8640-01 12 51639796 51639796 C T SMAGP Missense_Mutation p.E75K 0.12 deleterious(0.01) possibly_damaging(0.734) TCGA-78-8640-01 12 52080928 52080928 G T SCN8A Missense_Mutation p.R180I 0.14 deleterious(0) probably_damaging(0.998) TCGA-78-8640-01 12 53074188 53074188 C A KRT1 5'UTR 0.10 TCGA-78-8640-01 12 54333329 54333329 C T HOXC13 Silent p.G213G 0.19 TCGA-78-8640-01 12 57963140 57963140 C T KIF5A Silent p.S307S 0.10 TCGA-78-8640-01 12 57975352 57975352 G T KIF5A Splice_Site p.X970_splice 0.12 TCGA-78-8640-01 12 62932056 62932056 G A MON2 Missense_Mutation p.D742N 0.15 deleterious(0) probably_damaging(0.991) TCGA-78-8640-01 12 65639486 65639486 G T LEMD3 Missense_Mutation p.A809S 0.12 deleterious(0) probably_damaging(0.94) TCGA-78-8640-01 12 66308894 66308894 C A HMGA2 Intron 0.10 TCGA-78-8640-01 12 6709382 6709382 C T CHD4 Splice_Site p.X414_splice 0.07 TCGA-78-8640-01 12 68708778 68708778 T C MDM1 Silent p.Q483Q 0.30 TCGA-78-8640-01 12 70965068 70965068 A T PTPRB Silent p.I1036I 0.22 TCGA-78-8640-01 12 72017265 72017265 G A ZFC3H1 Missense_Mutation p.S1540L 0.09 tolerated(0.68) benign(0.001) TCGA-78-8640-01 12 72667125 72667125 G A TRHDE Silent p.V189V 0.14 TCGA-78-8640-01 12 7302131 7302131 G T CLSTN3 Missense_Mutation p.R696L 0.27 tolerated(0.39) benign(0.002) TCGA-78-8640-01 12 7805355 7805355 C T APOBEC1 Missense_Mutation p.E41K 0.29 deleterious(0) probably_damaging(0.998) TCGA-78-8640-01 12 78569105 78569105 G T NAV3 Missense_Mutation p.Q1667H 0.21 deleterious(0) probably_damaging(0.967) TCGA-78-8640-01 12 78569132 78569132 C G NAV3 Missense_Mutation p.I1676M 0.15 tolerated(0.06) probably_damaging(0.92) TCGA-78-8640-01 12 80626846 80626846 C T OTOGL Silent p.D253D 0.45 TCGA-78-8640-01 12 83251126 83251126 G A TMTC2 Missense_Mutation p.D141N 0.16 deleterious(0) probably_damaging(0.999) TCGA-78-8640-01 12 85515611 85515611 C T LRRIQ1 Nonsense_Mutation p.R1172* 0.08 TCGA-78-8640-01 12 863210 863210 C A WNK1 Missense_Mutation p.T160N 0.25 tolerated(0.13) unknown(0) TCGA-78-8640-01 12 9013486 9013486 G T A2ML1 Missense_Mutation p.D1092Y 0.08 deleterious(0) probably_damaging(0.972) TCGA-78-8640-01 12 9248200 9248200 T A A2M Missense_Mutation p.I650F 0.28 tolerated(0.73) benign(0.001) TCGA-78-8640-01 12 94631523 94631523 C T PLXNC1 Silent p.T688T 0.23 TCGA-78-8640-01 12 94772612 94772612 C A CCDC41 Missense_Mutation p.Q252H 0.13 deleterious(0) probably_damaging(0.999) TCGA-78-8640-01 12 94975958 94975958 C A TMCC3 Missense_Mutation p.Q145H 0.11 tolerated(0.29) probably_damaging(0.999) TCGA-78-8640-01 12 95602758 95602758 C G FGD6 Missense_Mutation p.A768P 0.15 deleterious(0.03) possibly_damaging(0.775) TCGA-78-8640-01 12 96691437 96691437 C G CDK17 Missense_Mutation p.D260H 0.18 deleterious(0.01) possibly_damaging(0.761) TCGA-78-8640-01 12 970232 970232 C A WNK1 Silent p.I558I 0.28 TCGA-78-8640-01 13 107822961 107822961 C A FAM155A Missense_Mutation p.V421F 0.13 tolerated(0.06) probably_damaging(0.997) TCGA-78-8640-01 13 108518593 108518593 G T FAM155A Missense_Mutation p.Q118K 0.24 tolerated_low_confidence(0.19) benign(0.116) TCGA-78-8640-01 13 108862093 108862093 A G LIG4 Silent p.S508S 0.23 TCGA-78-8640-01 13 108862288 108862288 T C LIG4 Silent p.R443R 0.20 TCGA-78-8640-01 13 19752451 19752451 C A TUBA3C Missense_Mutation p.A104S 0.25 deleterious_low_confidence(0.02) benign(0.177) TCGA-78-8640-01 13 36049841 36049841 G A MAB21L1 Silent p.Y145Y 0.38 TCGA-78-8640-01 13 39262919 39262919 C T FREM2 Missense_Mutation p.R480W 0.17 deleterious(0.01) benign(0.007) TCGA-78-8640-01 13 42830481 42830481 G T FHP1 RNA 0.17 TCGA-78-8640-01 13 42876707 42876707 A G AKAP11 Silent p.A1275A 0.42 TCGA-78-8640-01 13 52991230 52991230 G C VPS36 Missense_Mutation p.H318D 0.08 deleterious(0.02) probably_damaging(0.982) TCGA-78-8640-01 13 53624196 53624196 G C OLFM4 Missense_Mutation p.G275R 0.20 deleterious(0) probably_damaging(1) TCGA-78-8640-01 13 76409419 76409419 G A LMO7 Missense_Mutation p.E860K 0.06 tolerated(0.11) benign(0.103) TCGA-78-8640-01 13 78472259 78472259 T A EDNRB 3'UTR 0.43 TCGA-78-8640-01 14 20389633 20389633 A C OR4K5 Silent p.R290R 0.11 TCGA-78-8640-01 14 20482726 20482726 C A OR4K14 Missense_Mutation p.L209F 0.26 tolerated(0.23) benign(0.392) TCGA-78-8640-01 14 20711258 20711258 C G OR11H4 Nonsense_Mutation p.S103* 0.07 TCGA-78-8640-01 14 21546374 21546374 G T ARHGEF40 Silent p.L691L 0.35 TCGA-78-8640-01 14 23549259 23549259 T C ACIN1 Missense_Mutation p.K487E 0.30 probably_damaging(0.986) TCGA-78-8640-01 14 29237818 29237818 C A FOXG1 Missense_Mutation p.P445T 0.16 deleterious_low_confidence(0.01) benign(0.014) TCGA-78-8640-01 14 33204922 33204922 G A AKAP6 Missense_Mutation p.R1069H 0.05 deleterious(0.04) benign(0.259) TCGA-78-8640-01 14 38679584 38679584 C G SSTR1 Missense_Mutation p.F330L 0.40 deleterious(0.01) possibly_damaging(0.827) TCGA-78-8640-01 14 39304855 39304855 G A LINC00639 RNA 0.09 TCGA-78-8640-01 14 56139660 56139660 G A KTN1 Missense_Mutation p.R1206Q 0.14 deleterious(0.03) benign(0.002) TCGA-78-8640-01 14 64935338 64935338 C A AKAP5 Silent p.R76R 0.38 TCGA-78-8640-01 14 70634985 70634985 G T SLC8A3 Nonsense_Mutation p.S52* 0.32 TCGA-78-8640-01 14 71137808 71137808 G A TTC9 Missense_Mutation p.R202Q 0.14 deleterious(0) probably_damaging(0.957) TCGA-78-8640-01 14 73141046 73141046 G T DPF3 Missense_Mutation p.P258H 0.48 deleterious(0) benign(0.202) TCGA-78-8640-01 14 75265281 75265281 C G YLPM1 Missense_Mutation p.P1094R 0.29 probably_damaging(0.997) TCGA-78-8640-01 14 77257685 77257685 G A ANGEL1 Missense_Mutation p.S548F 0.17 deleterious(0.04) benign(0.101) TCGA-78-8640-01 14 94088083 94088083 C T UNC79 Missense_Mutation p.L1325F 0.33 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-78-8640-01 14 94129022 94129022 G T UNC79 Missense_Mutation p.V2062L 0.36 tolerated(0.48) possibly_damaging(0.477) TCGA-78-8640-01 14 94173139 94173139 G T UNC79 Missense_Mutation p.Q2422H 0.35 tolerated(0.12) probably_damaging(0.978) TCGA-78-8640-01 15 20644015 20644015 C G HERC2P3 RNA 0.07 TCGA-78-8640-01 15 23811043 23811043 C A MKRN3 Silent p.S38S 0.16 TCGA-78-8640-01 15 23811208 23811208 C A MKRN3 Silent p.G93G 0.14 TCGA-78-8640-01 15 23889981 23889981 C A MAGEL2 Missense_Mutation p.W367L 0.16 tolerated(0.07) possibly_damaging(0.722) TCGA-78-8640-01 15 25429470 25429470 C T SNORD115-8 RNA 0.15 TCGA-78-8640-01 15 25463718 25463718 C T SNORD115-27 5'Flank 0.15 TCGA-78-8640-01 15 25475907 25475907 T A SNORD115-33 5'Flank 0.13 TCGA-78-8640-01 15 29386495 29386495 T A APBA2 Silent p.A410A 0.18 TCGA-78-8640-01 15 31212784 31212784 C T FAN1 Silent p.F660F 0.26 TCGA-78-8640-01 15 34072467 34072467 G A RYR3 Missense_Mutation p.A3065T 0.11 probably_damaging(0.954) TCGA-78-8640-01 15 40659416 40659421 TTCGGA - DISP2 In_Frame_Del p.L368_T370delinsP 0.19 TCGA-78-8640-01 15 40675025 40675025 C A KNSTRN 5'UTR 0.19 TCGA-78-8640-01 15 40990990 40990990 G C RAD51 Missense_Mutation p.D12H 0.10 deleterious(0.01) benign(0.227) TCGA-78-8640-01 15 42170803 42170803 C A SPTBN5 Missense_Mutation p.E1069D 0.09 benign(0.009) TCGA-78-8640-01 15 42193197 42193197 G - EHD4 Frame_Shift_Del p.F425Sfs*51 0.19 TCGA-78-8640-01 15 45389463 45389463 C T DUOX2 Missense_Mutation p.V1274M 0.19 deleterious(0) benign(0.259) TCGA-78-8640-01 15 45556216 45556216 G A SLC28A2 Missense_Mutation p.S195N 0.09 tolerated(0.32) benign(0.345) TCGA-78-8640-01 15 45560576 45560576 G A SLC28A2 Silent p.Q456Q 0.23 TCGA-78-8640-01 15 48537039 48537039 G T SLC12A1 Missense_Mutation p.G464C 0.13 deleterious(0) probably_damaging(1) TCGA-78-8640-01 15 50596212 50596212 T C GABPB1 Missense_Mutation p.H76R 0.20 deleterious(0) probably_damaging(0.994) TCGA-78-8640-01 15 54707184 54707184 C A UNC13C Missense_Mutation p.P1618T 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-78-8640-01 15 58458936 58458936 C A AQP9 Missense_Mutation p.T59N 0.09 deleterious(0.01) probably_damaging(0.948) TCGA-78-8640-01 15 62211564 62211564 C G VPS13C Missense_Mutation p.S2521T 0.15 tolerated(0.16) benign(0.001) TCGA-78-8640-01 15 75093361 75093361 G C CSK Missense_Mutation p.R244P 0.16 deleterious(0.02) possibly_damaging(0.789) TCGA-78-8640-01 15 77324705 77324705 C A PSTPIP1 Missense_Mutation p.Q270K 0.15 tolerated(0.68) benign(0.002) TCGA-78-8640-01 15 78885589 78885589 T A CHRNA5 Missense_Mutation p.N467K 0.18 tolerated_low_confidence(0.07) benign(0.08) TCGA-78-8640-01 15 91527365 91527365 G T PRC1 Silent p.L50L 0.14 TCGA-78-8640-01 15 93524057 93524057 T A CHD2 Missense_Mutation p.F963L 0.16 deleterious(0) benign(0.341) TCGA-78-8640-01 15 99251008 99251008 G T IGF1R Silent p.T104T 0.17 TCGA-78-8640-01 16 24231334 24231334 T A PRKCB 3'UTR 0.31 TCGA-78-8640-01 16 27460700 27460700 T C IL21R 3'UTR 0.19 TCGA-78-8640-01 16 28509653 28509653 A G APOBR Silent p.R1069R 0.33 TCGA-78-8640-01 16 28617156 28617156 G A SULT1A1 Missense_Mutation p.R292C 0.08 tolerated(0.17) benign(0.01) TCGA-78-8640-01 16 28922245 28922245 G A RABEP2 Silent p.T351T 0.13 TCGA-78-8640-01 16 30119753 30119753 C G GDPD3 Missense_Mutation p.R236S 0.38 tolerated(0.06) benign(0.107) TCGA-78-8640-01 16 31228130 31228130 G A PYDC1 Missense_Mutation p.R74C 0.26 tolerated(0.09) benign(0.032) TCGA-78-8640-01 16 3139483 3139483 C A ZSCAN10 Missense_Mutation p.R596L 0.11 tolerated(0.2) probably_damaging(0.999) TCGA-78-8640-01 16 334453 334453 C G PDIA2 Missense_Mutation p.A89G 0.31 deleterious(0.01) possibly_damaging(0.622) TCGA-78-8640-01 16 3795338 3795338 T C CREBBP Missense_Mutation p.E1285G 0.35 unknown(0) TCGA-78-8640-01 16 4484477 4484477 C T DNAJA3 Nonsense_Mutation p.R102* 0.12 TCGA-78-8640-01 16 51174565 51174565 C T SALL1 Missense_Mutation p.S523N 0.12 deleterious(0.02) benign(0.173) TCGA-78-8640-01 16 51175759 51175759 A G SALL1 Missense_Mutation p.M125T 0.10 tolerated(0.06) benign(0.142) TCGA-78-8640-01 16 55794593 55794593 T A CES1P1 RNA 0.10 TCGA-78-8640-01 16 58426466 58426466 G T GINS3 5'UTR 0.17 TCGA-78-8640-01 16 66670368 66670368 C A CMTM4 Missense_Mutation p.L101F 0.23 deleterious(0.03) probably_damaging(1) TCGA-78-8640-01 16 68057119 68057119 C T DDX28 5'UTR 0.14 TCGA-78-8640-01 16 68721553 68721553 A T CDH3 Missense_Mutation p.K570M 0.17 deleterious(0.02) probably_damaging(0.935) TCGA-78-8640-01 16 72166693 72166693 C A PMFBP1 Missense_Mutation p.K467N 0.32 tolerated(0.09) benign(0.014) TCGA-78-8640-01 16 74452084 74452084 A G CLEC18B Missense_Mutation p.M110T 0.17 tolerated(0.31) benign(0.007) TCGA-78-8640-01 16 74666542 74666542 T A RFWD3 Missense_Mutation p.N486Y 0.34 deleterious(0) probably_damaging(0.927) TCGA-78-8640-01 16 75276842 75276842 G T BCAR1 Silent p.G99G 0.09 TCGA-78-8640-01 16 75634134 75634134 C A ADAT1 Missense_Mutation p.D497Y 0.20 deleterious(0) probably_damaging(0.983) TCGA-78-8640-01 16 77850871 77850871 C A VAT1L Missense_Mutation p.P96H 0.13 deleterious(0.02) probably_damaging(0.986) TCGA-78-8640-01 16 82033255 82033255 C A SDR42E1 Missense_Mutation p.D215Y 0.19 deleterious(0) probably_damaging(0.95) TCGA-78-8640-01 16 82033399 82033399 T A SDR42E1 Missense_Mutation p.N167Y 0.12 deleterious(0) probably_damaging(0.979) TCGA-78-8640-01 16 85694872 85694872 C G GSE1 Silent p.P587P 0.19 TCGA-78-8640-01 16 85701835 85701835 G T GSE1 Missense_Mutation p.A1074S 0.18 tolerated(0.62) benign(0.269) TCGA-78-8640-01 17 18205211 18205211 C A TOP3A Missense_Mutation p.Q301H 0.27 tolerated(0.09) benign(0.014) TCGA-78-8640-01 17 18219775 18219775 T G SMCR8 Missense_Mutation p.F224L 0.29 tolerated(0.34) possibly_damaging(0.669) TCGA-78-8640-01 17 25783878 25783878 A C KSR1 Missense_Mutation p.Q70P 0.20 deleterious(0) probably_damaging(0.992) TCGA-78-8640-01 17 25967683 25967683 G C LGALS9 Missense_Mutation p.V73L 0.15 deleterious(0.04) probably_damaging(0.927) TCGA-78-8640-01 17 27248797 27248797 T C PHF12 Missense_Mutation p.T249A 0.10 tolerated(0.77) benign(0.001) TCGA-78-8640-01 17 28659159 28659159 G A TMIGD1 5'UTR 0.19 TCGA-78-8640-01 17 3119074 3119074 C A OR1A1 Missense_Mutation p.R54S 0.23 deleterious(0.01) benign(0.229) TCGA-78-8640-01 17 3181319 3181319 G A OR3A2 Missense_Mutation p.P304L 0.24 deleterious(0.04) benign(0.002) TCGA-78-8640-01 17 32904530 32904530 G T C17orf102 3'UTR 0.30 TCGA-78-8640-01 17 3343561 3343561 G T SPATA22 Missense_Mutation p.N324K 0.22 tolerated(0.08) benign(0.056) TCGA-78-8640-01 17 35733081 35733081 C A C17orf78 Missense_Mutation p.A16D 0.15 deleterious(0.02) possibly_damaging(0.839) TCGA-78-8640-01 17 37186348 37186348 A T CTD-2206N4.2 5'Flank 0.35 TCGA-78-8640-01 17 37343158 37343158 C G CACNB1 Missense_Mutation p.G147R 0.15 deleterious(0) probably_damaging(1) TCGA-78-8640-01 17 38907313 38907313 G A KRT25 Nonsense_Mutation p.Q284* 0.14 TCGA-78-8640-01 17 38978810 38978810 G T KRT10 Missense_Mutation p.H10N 0.10 tolerated_low_confidence(0.17) unknown(0) TCGA-78-8640-01 17 39723904 39723904 C A KRT9 Missense_Mutation p.G498V 0.23 tolerated_low_confidence(0.49) unknown(0) TCGA-78-8640-01 17 39998074 39998074 G C KLHL10 Splice_Site p.X65_splice 0.11 TCGA-78-8640-01 17 40997112 40997112 G T AOC2 Missense_Mutation p.G157C 0.09 deleterious(0) possibly_damaging(0.904) TCGA-78-8640-01 17 41561481 41561481 G A DHX8 Missense_Mutation p.E26K 0.12 deleterious(0.05) unknown(0) TCGA-78-8640-01 17 42293286 42293286 G C UBTF Silent p.G102G 0.19 TCGA-78-8640-01 17 42333191 42333191 C T SLC4A1 Silent p.Q550Q 0.09 TCGA-78-8640-01 17 42990719 42990719 G T GFAP Missense_Mutation p.A233E 0.12 deleterious(0.02) probably_damaging(0.948) TCGA-78-8640-01 17 43475384 43475384 C G ARHGAP27 Silent p.L250L 0.15 TCGA-78-8640-01 17 43481983 43481983 C T ARHGAP27 Missense_Mutation p.R97Q 0.27 tolerated(0.65) benign(0.004) TCGA-78-8640-01 17 44770357 44770357 G C NSF Missense_Mutation p.G345A 0.10 tolerated(0.09) possibly_damaging(0.665) TCGA-78-8640-01 17 45452284 45452284 C T EFCAB13 Missense_Mutation p.L442F 0.12 tolerated(0.05) probably_damaging(0.932) TCGA-78-8640-01 17 46867420 46867420 C A TTLL6 Missense_Mutation p.V425L 0.08 deleterious(0.02) probably_damaging(0.977) TCGA-78-8640-01 17 46867421 46867421 C T TTLL6 Silent p.E424E 0.07 TCGA-78-8640-01 17 46998559 46998559 G T UBE2Z Missense_Mutation p.C243F 0.14 tolerated(0.13) benign(0.195) TCGA-78-8640-01 17 47284190 47284190 C A GNGT2 Missense_Mutation p.D47Y 0.22 deleterious(0) probably_damaging(1) TCGA-78-8640-01 17 48051401 48051401 G T DLX4 3'UTR 0.22 TCGA-78-8640-01 17 48270371 48270371 C A COL1A1 Missense_Mutation p.G602V 0.17 unknown(0) TCGA-78-8640-01 17 48696263 48696263 G T CACNA1G Missense_Mutation p.W1892L 0.33 tolerated(0.34) benign(0.084) TCGA-78-8640-01 17 48764929 48764929 G A ABCC3 Missense_Mutation p.R1438Q 0.13 deleterious(0.01) benign(0.382) TCGA-78-8640-01 17 53045693 53045693 G A COX11 Silent p.G105G 0.12 TCGA-78-8640-01 17 56620110 56620110 C T C17orf47 Missense_Mutation p.A480T 0.26 tolerated(0.06) possibly_damaging(0.908) TCGA-78-8640-01 17 58236703 58236703 C A CA4 Missense_Mutation p.A286D 0.14 deleterious(0) benign(0.221) TCGA-78-8640-01 17 58299796 58299796 C A USP32 Nonsense_Mutation p.G575* 0.27 TCGA-78-8640-01 17 59147380 59147380 A G BCAS3 Intron 0.10 TCGA-78-8640-01 17 59479158 59479158 C G TBX2 Missense_Mutation p.S170W 0.15 deleterious(0) probably_damaging(0.997) TCGA-78-8640-01 17 59544956 59544956 C T TBX4 Missense_Mutation p.R163W 0.28 deleterious(0) probably_damaging(0.983) TCGA-78-8640-01 17 59952278 59952278 G A INTS2 Missense_Mutation p.H868Y 0.19 tolerated(0.28) benign(0.001) TCGA-78-8640-01 17 60491190 60491190 C T EFCAB3 Missense_Mutation p.A374V 0.13 tolerated(0.14) benign(0.318) TCGA-78-8640-01 17 61987219 61987219 T C CSHL1 Missense_Mutation p.Y174C 0.30 deleterious(0.04) probably_damaging(0.994) TCGA-78-8640-01 17 648100 648100 G A GEMIN4 3'UTR 0.15 TCGA-78-8640-01 17 65156383 65156383 G T HELZ Missense_Mutation p.P724H 0.10 deleterious(0) probably_damaging(0.999) TCGA-78-8640-01 17 67039623 67039623 G T ABCA9 Intron 0.11 TCGA-78-8640-01 17 67098996 67098996 T C ABCA6 Missense_Mutation p.I952V 0.17 tolerated(0.2) possibly_damaging(0.536) TCGA-78-8640-01 17 72428114 72428114 C T GPRC5C 5'UTR 0.19 TCGA-78-8640-01 17 73843060 73843060 C T WBP2 Missense_Mutation p.A221T 0.20 deleterious(0.05) possibly_damaging(0.834) TCGA-78-8640-01 17 74729741 74729741 C G METTL23 Silent p.V182V 0.09 TCGA-78-8640-01 17 7529633 7529633 G A SAT2 3'UTR 0.11 TCGA-78-8640-01 17 7578461 7578461 C G TP53 Missense_Mutation p.V157L 0.18 tolerated(0.51) possibly_damaging(0.838) TCGA-78-8640-01 17 76167811 76167811 C T SYNGR2 Intron 0.12 TCGA-78-8640-01 17 76487572 76487572 C G DNAH17 Missense_Mutation p.D2194H 0.22 probably_damaging(1) TCGA-78-8640-01 17 78013835 78013835 A T CCDC40 Missense_Mutation p.Q106H 0.13 deleterious(0.03) benign(0.041) TCGA-78-8640-01 17 79263600 79263600 G A SLC38A10 Silent p.I36I 0.17 TCGA-78-8640-01 17 80231184 80231184 A G CSNK1D Missense_Mutation p.L25P 0.16 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-78-8640-01 18 210491 210491 A T USP14 Missense_Mutation p.Q444L 0.15 tolerated(0.23) benign(0) TCGA-78-8640-01 18 21897298 21897298 T C OSBPL1A Missense_Mutation p.R267G 0.07 tolerated(0.48) benign(0.045) TCGA-78-8640-01 18 28911790 28911790 C A DSG1 Missense_Mutation p.T215N 0.20 deleterious(0.05) possibly_damaging(0.896) TCGA-78-8640-01 18 30825289 30825289 T A CCDC178 Missense_Mutation p.I505F 0.39 deleterious(0) possibly_damaging(0.534) TCGA-78-8640-01 18 31538378 31538378 G T NOL4 Missense_Mutation p.P354H 0.19 deleterious(0) probably_damaging(1) TCGA-78-8640-01 18 43708088 43708088 G C HAUS1 Silent p.L278L 0.24 TCGA-78-8640-01 18 55280856 55280856 C A NARS Missense_Mutation p.W133C 0.19 deleterious(0) probably_damaging(1) TCGA-78-8640-01 18 58039199 58039199 C T MC4R Silent p.V128V 0.17 TCGA-78-8640-01 18 580861 580861 G T CETN1 Silent p.R151R 0.24 TCGA-78-8640-01 18 6093376 6093376 C T L3MBTL4 Missense_Mutation p.E451K 0.13 tolerated(0.55) benign(0.129) TCGA-78-8640-01 18 61465961 61465961 G A SERPINB7 Missense_Mutation p.C193Y 0.35 tolerated(0.1) benign(0.238) TCGA-78-8640-01 18 61652390 61652390 G C SERPINB8 Missense_Mutation p.V211L 0.18 tolerated(0.42) benign(0.033) TCGA-78-8640-01 18 644961 644961 A C CLUL1 Missense_Mutation p.M421L 0.09 tolerated(0.2) benign(0.014) TCGA-78-8640-01 18 6986209 6986209 C A LAMA1 Missense_Mutation p.R1769M 0.19 deleterious(0.01) possibly_damaging(0.657) TCGA-78-8640-01 18 77170431 77170431 C T NFATC1 Silent p.V39V 0.17 TCGA-78-8640-01 19 10169736 10169736 G C C3P1 RNA 0.36 TCGA-78-8640-01 19 10405196 10405196 C T ICAM5 Missense_Mutation p.R704W 0.14 tolerated(0.05) probably_damaging(0.984) TCGA-78-8640-01 19 11123789 11123789 G T SMARCA4 Splice_Site p.X813_splice 0.36 TCGA-78-8640-01 19 11943075 11943075 C G ZNF440 Missense_Mutation p.H362D 0.11 deleterious(0) probably_damaging(0.999) TCGA-78-8640-01 19 12059766 12059766 A G ZNF700 Silent p.K309K 0.41 TCGA-78-8640-01 19 1272009 1272009 G A CIRBP Missense_Mutation p.R154Q 0.16 deleterious(0.04) unknown(0) TCGA-78-8640-01 19 13035059 13035059 C A FARSA Missense_Mutation p.V432F 0.11 deleterious(0) probably_damaging(0.95) TCGA-78-8640-01 19 14273672 14273685 AAGGCGTTGGATGC - LPHN1 Frame_Shift_Del p.A315Hfs*16 0.48 TCGA-78-8640-01 19 1434917 1434917 G T DAZAP1 3'UTR 0.41 TCGA-78-8640-01 19 1438491 1438491 C G RPS15 Intron 0.17 TCGA-78-8640-01 19 15383769 15383769 G C BRD4 Missense_Mutation p.P48A 0.36 unknown(0) TCGA-78-8640-01 19 15512273 15512273 G A AKAP8L Silent p.F168F 0.15 TCGA-78-8640-01 19 15918389 15918389 C G OR10H1 Missense_Mutation p.L153F 0.32 tolerated(1) benign(0.353) TCGA-78-8640-01 19 17375113 17375113 G A USHBP1 5'UTR 0.19 TCGA-78-8640-01 19 22940810 22940810 G T ZNF99 Nonsense_Mutation p.S634* 0.44 TCGA-78-8640-01 19 23544935 23544935 A T ZNF91 Silent p.T282T 0.08 TCGA-78-8640-01 19 23544936 23544936 G C ZNF91 Missense_Mutation p.T282S 0.09 tolerated(0.17) benign(0.238) TCGA-78-8640-01 19 31025884 31025884 G T ZNF536 Missense_Mutation p.K767N 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-78-8640-01 19 34699902 34699902 G T LSM14A Missense_Mutation p.V162F 0.44 tolerated(0.09) benign(0.078) TCGA-78-8640-01 19 36053346 36053346 G T ATP4A Silent p.T137T 0.30 TCGA-78-8640-01 19 36380797 36380797 C G NFKBID Missense_Mutation p.E295Q 0.32 deleterious(0.01) possibly_damaging(0.905) TCGA-78-8640-01 19 37038878 37038879 - GT ZNF529 Frame_Shift_Ins p.G195Lfs*17 0.30 TCGA-78-8640-01 19 38912679 38912679 C A RASGRP4 Missense_Mutation p.M46I 0.11 tolerated(0.17) benign(0.059) TCGA-78-8640-01 19 39002948 39002948 C T RYR1 Silent p.A3099A 0.48 TCGA-78-8640-01 19 40095993 40095993 G C LGALS13 Missense_Mutation p.E90Q 0.29 deleterious(0.03) possibly_damaging(0.51) TCGA-78-8640-01 19 40096020 40096020 G C LGALS13 Missense_Mutation p.E99Q 0.22 tolerated(0.11) possibly_damaging(0.461) TCGA-78-8640-01 19 40197922 40197922 G T LGALS14 Missense_Mutation p.S95I 0.47 deleterious(0.02) possibly_damaging(0.841) TCGA-78-8640-01 19 40325100 40325100 C G FBL 3'UTR 0.20 TCGA-78-8640-01 19 40430489 40430489 C T FCGBP Missense_Mutation p.G485D 0.40 probably_damaging(0.999) TCGA-78-8640-01 19 44515430 44515430 C G ZNF230 Silent p.L413L 0.14 TCGA-78-8640-01 19 44681351 44681351 G A ZNF226 Missense_Mutation p.E646K 0.22 tolerated(0.06) possibly_damaging(0.845) TCGA-78-8640-01 19 44771144 44771144 G A ZNF233 Intron 0.27 TCGA-78-8640-01 19 45593559 45593559 C T GEMIN7 Missense_Mutation p.R63W 0.13 deleterious(0) probably_damaging(0.989) TCGA-78-8640-01 19 45811715 45811715 C G CKM Silent p.G243G 0.31 TCGA-78-8640-01 19 46511435 46511435 C T CCDC61 Missense_Mutation p.P143S 0.28 deleterious(0) probably_damaging(0.986) TCGA-78-8640-01 19 46842898 46842898 C G HIF3A 3'UTR 0.17 TCGA-78-8640-01 19 46972992 46972992 T C PNMAL1 Missense_Mutation p.N434S 0.39 tolerated(0.21) possibly_damaging(0.486) TCGA-78-8640-01 19 46997684 46997684 G A PNMAL2 Missense_Mutation p.R347W 0.12 deleterious(0) probably_damaging(0.938) TCGA-78-8640-01 19 48967506 48967506 A T KCNJ14 Silent p.G261G 0.44 TCGA-78-8640-01 19 50148391 50148391 G A SCAF1 Silent p.L36L 0.33 TCGA-78-8640-01 19 50266451 50266451 G T TSKS Silent p.A18A 0.30 TCGA-78-8640-01 19 51017847 51017847 G T ASPDH 5'Flank 0.19 TCGA-78-8640-01 19 51205827 51205827 C T SHANK1 Silent p.R548R 0.15 TCGA-78-8640-01 19 51298183 51298183 T C ACPT Missense_Mutation p.V376A 0.18 tolerated(0.8) benign(0.001) TCGA-78-8640-01 19 51298336 51298336 T C ACPT Missense_Mutation p.V401A 0.17 deleterious(0.01) benign(0.106) TCGA-78-8640-01 19 52130739 52130739 T A SIGLEC5 Missense_Mutation p.S420C 0.32 deleterious(0) probably_damaging(0.99) TCGA-78-8640-01 19 52447483 52447483 G T ZNF613 Missense_Mutation p.R116M 0.41 deleterious(0.03) benign(0.252) TCGA-78-8640-01 19 53911497 53911497 T A ZNF765 Nonsense_Mutation p.L230* 0.36 TCGA-78-8640-01 19 54783452 54783452 A C LILRB2 Missense_Mutation p.S136A 0.30 deleterious(0.04) benign(0.203) TCGA-78-8640-01 19 54800020 54800020 C A LILRA3 3'UTR 0.25 TCGA-78-8640-01 19 55106333 55106333 C A LILRA1 Missense_Mutation p.H92N 0.38 tolerated(0.07) possibly_damaging(0.746) TCGA-78-8640-01 19 55224689 55224689 G T LILRP2 RNA 0.30 TCGA-78-8640-01 19 55224690 55224690 G A LILRP2 RNA 0.26 TCGA-78-8640-01 19 55995147 55995147 A T ZNF628 Missense_Mutation p.T863S 0.17 tolerated(0.24) unknown(0) TCGA-78-8640-01 19 56189960 56189960 G A EPN1 Silent p.G100G 0.44 TCGA-78-8640-01 19 57334188 57334188 G T PEG3 Missense_Mutation p.D166E 0.48 tolerated(0.59) benign(0.001) TCGA-78-8640-01 19 58131686 58131686 G T ZNF134 Nonsense_Mutation p.E67* 0.08 TCGA-78-8640-01 19 6848051 6848051 G T VAV1 Silent p.L685L 0.29 TCGA-78-8640-01 19 6901981 6901981 G C EMR1 Missense_Mutation p.E204Q 0.21 tolerated(0.46) benign(0.081) TCGA-78-8640-01 19 8190789 8190789 G T FBN3 Silent p.G906G 0.17 TCGA-78-8640-01 19 9086989 9086989 G T MUC16 Missense_Mutation p.P1609Q 0.39 unknown(0) TCGA-78-8640-01 19 992088 992088 G T WDR18 Silent p.G355G 0.23 TCGA-78-8640-01 1 109795265 109795265 A T CELSR2 Missense_Mutation p.Q855L 0.23 deleterious(0.03) probably_damaging(0.909) TCGA-78-8640-01 1 111743090 111743090 C A DENND2D 5'UTR 0.15 TCGA-78-8640-01 1 11249764 11249764 C T ANGPTL7 Missense_Mutation p.A43V 0.15 tolerated(0.41) benign(0.004) TCGA-78-8640-01 1 117142905 117142905 C A IGSF3 Missense_Mutation p.D583Y 0.10 deleterious(0) probably_damaging(0.995) TCGA-78-8640-01 1 11718921 11718921 G T FBXO44 Missense_Mutation p.W206L 0.18 deleterious(0) probably_damaging(0.998) TCGA-78-8640-01 1 118492655 118492655 G A WDR3 Missense_Mutation p.E550K 0.27 deleterious(0) probably_damaging(0.968) TCGA-78-8640-01 1 12907840 12907840 T A HNRNPCL1 Silent p.A101A 0.08 TCGA-78-8640-01 1 12908147 12908147 T A HNRNPCL1 5'UTR 0.06 TCGA-78-8640-01 1 12980191 12980191 C T PRAMEF7 Silent p.I461I 0.31 TCGA-78-8640-01 1 145368679 145368679 C T NBPF10 Nonsense_Mutation p.Q3553* 0.04 TCGA-78-8640-01 1 145698987 145698987 C T CD160 Nonsense_Mutation p.W168* 0.10 TCGA-78-8640-01 1 149895781 149895781 G T SF3B4 Missense_Mutation p.P347T 0.17 deleterious(0.01) unknown(0) TCGA-78-8640-01 1 149902618 149902618 G A MTMR11 Intron 0.12 TCGA-78-8640-01 1 150769253 150769253 G T CTSK 3'UTR 0.09 TCGA-78-8640-01 1 150801705 150801705 T C ARNT Splice_Site p.X345_splice 0.10 TCGA-78-8640-01 1 152326897 152326897 G T FLG2 Nonsense_Mutation p.S1122* 0.42 TCGA-78-8640-01 1 152382571 152382571 C T CRNN Silent p.E329E 0.35 TCGA-78-8640-01 1 152648786 152648786 G T LCE2C Missense_Mutation p.G99C 0.12 tolerated_low_confidence(0.17) unknown(0) TCGA-78-8640-01 1 152659357 152659357 C T LCE2B Missense_Mutation p.P13L 0.11 deleterious_low_confidence(0.02) unknown(0) TCGA-78-8640-01 1 153661697 153661697 G T NPR1 Silent p.T866T 0.10 TCGA-78-8640-01 1 155235708 155235708 C G CLK2 Missense_Mutation p.K291N 0.35 deleterious(0) probably_damaging(0.999) TCGA-78-8640-01 1 156824049 156824049 C A INSRR Missense_Mutation p.Q44H 0.11 deleterious(0.01) benign(0.309) TCGA-78-8640-01 1 156910149 156910149 T C ARHGEF11 Missense_Mutation p.S1195G 0.13 tolerated_low_confidence(0.07) benign(0.005) TCGA-78-8640-01 1 157811584 157811584 A C CD5L 5'UTR 0.33 TCGA-78-8640-01 1 158435684 158435684 C T OR10K1 Silent p.H111H 0.46 TCGA-78-8640-01 1 158669933 158669933 C A OR6K2 Silent p.S170S 0.12 TCGA-78-8640-01 1 159175418 159175418 C A DARC Silent p.P65P 0.35 TCGA-78-8640-01 1 159284174 159284174 G A OR10J3 Silent p.P92P 0.30 TCGA-78-8640-01 1 159858261 159858261 C A CCDC19 Nonsense_Mutation p.E100* 0.13 TCGA-78-8640-01 1 160520761 160520761 C T CD84 Silent p.E292E 0.11 TCGA-78-8640-01 1 161167827 161167827 C A ADAMTS4 Missense_Mutation p.K197N 0.12 tolerated(0.36) benign(0.033) TCGA-78-8640-01 1 161989751 161989751 G A OLFML2B Silent p.F132F 0.10 TCGA-78-8640-01 1 165652284 165652284 G A ALDH9A1 Missense_Mutation p.R131C 0.21 tolerated(0.05) benign(0.045) TCGA-78-8640-01 1 167096921 167096921 G T DUSP27 Missense_Mutation p.M851I 0.50 deleterious(0.03) benign(0.038) TCGA-78-8640-01 1 169347741 169347741 A T BLZF1 Silent p.V214V 0.09 TCGA-78-8640-01 1 169831905 169831905 G A SCYL3 Missense_Mutation p.S330L 0.11 deleterious(0) probably_damaging(0.993) TCGA-78-8640-01 1 170965720 170965720 G A MROH9 Silent p.K470K 0.08 TCGA-78-8640-01 1 170965721 170965721 G T MROH9 Nonsense_Mutation p.E471* 0.08 TCGA-78-8640-01 1 171292287 171292287 G T FMO4 Nonsense_Mutation p.E93* 0.09 TCGA-78-8640-01 1 175049360 175049360 G T TNN Missense_Mutation p.W282C 0.39 deleterious(0) probably_damaging(0.996) TCGA-78-8640-01 1 175375358 175375358 C A TNR Missense_Mutation p.A165S 0.32 deleterious(0.03) probably_damaging(0.937) TCGA-78-8640-01 1 176132971 176132971 C A RFWD2 Missense_Mutation p.D208Y 0.32 deleterious(0.01) benign(0.43) TCGA-78-8640-01 1 176734958 176734958 C A PAPPA2 Nonsense_Mutation p.Y1436* 0.39 TCGA-78-8640-01 1 177001821 177001821 G T ASTN1 Missense_Mutation p.H212Q 0.14 tolerated_low_confidence(1) benign(0.009) TCGA-78-8640-01 1 179306970 179306970 A C SOAT1 Splice_Site p.X110_splice 0.53 TCGA-78-8640-01 1 179530484 179530484 A T NPHS2 Missense_Mutation p.Y131N 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-78-8640-01 1 181480507 181480507 G T CACNA1E Nonsense_Mutation p.E125* 0.13 TCGA-78-8640-01 1 181725202 181725202 C A CACNA1E Missense_Mutation p.T1367N 0.17 deleterious(0) probably_damaging(0.932) TCGA-78-8640-01 1 183079630 183079630 T C LAMC1 Missense_Mutation p.C288R 0.11 deleterious(0.01) probably_damaging(0.96) TCGA-78-8640-01 1 183221654 183221654 G T NMNAT2 3'UTR 0.16 TCGA-78-8640-01 1 183933060 183933060 G T COLGALT2 Silent p.L309L 0.15 TCGA-78-8640-01 1 190250792 190250792 G C BRINP3 Missense_Mutation p.R109G 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-78-8640-01 1 19184026 19184026 C G TAS1R2 Silent p.L94L 0.14 TCGA-78-8640-01 1 197073035 197073035 C G ASPM Missense_Mutation p.Q1782H 0.14 deleterious(0) probably_damaging(0.999) TCGA-78-8640-01 1 200571187 200571187 T C KIF14 Silent p.K663K 0.13 TCGA-78-8640-01 1 200977976 200977976 C A KIF21B Missense_Mutation p.G123V 0.32 deleterious(0) probably_damaging(0.999) TCGA-78-8640-01 1 203316985 203316985 G A FMOD Silent p.G138G 0.10 TCGA-78-8640-01 1 204085650 204085650 T G SOX13 Missense_Mutation p.L145R 0.11 deleterious(0) probably_damaging(0.997) TCGA-78-8640-01 1 205090984 205090984 C A RBBP5 Silent p.L6L 0.13 TCGA-78-8640-01 1 207510124 207510124 C G CD55 Missense_Mutation p.Q314E 0.14 deleterious(0) benign(0.26) TCGA-78-8640-01 1 208084357 208084357 C T CD34 Silent p.L23L 0.18 TCGA-78-8640-01 1 20915616 20915616 T G CDA 5'UTR 0.19 TCGA-78-8640-01 1 209879210 209879210 G A HSD11B1 Missense_Mutation p.R48K 0.21 tolerated(0.07) benign(0.01) TCGA-78-8640-01 1 21052498 21052498 C G SH2D5 Missense_Mutation p.C102S 0.21 tolerated(0.59) benign(0.068) TCGA-78-8640-01 1 21099998 21099998 C A HP1BP3 Silent p.P152P 0.14 TCGA-78-8640-01 1 21220017 21220017 C T EIF4G3 Missense_Mutation p.G699D 0.11 deleterious(0) possibly_damaging(0.806) TCGA-78-8640-01 1 213170529 213170529 G A ANGEL2 Missense_Mutation p.S484F 0.18 deleterious(0.01) probably_damaging(0.972) TCGA-78-8640-01 1 214170934 214170934 G C PROX1 Missense_Mutation p.L352F 0.16 deleterious(0) probably_damaging(1) TCGA-78-8640-01 1 214705918 214705918 G C PTPN14 Intron 0.15 TCGA-78-8640-01 1 214818975 214818975 C G CENPF Missense_Mutation p.S2021C 0.13 probably_damaging(0.996) TCGA-78-8640-01 1 215987204 215987204 G T USH2A Missense_Mutation p.R3205S 0.09 benign(0.002) TCGA-78-8640-01 1 216017705 216017705 C A USH2A Missense_Mutation p.K3063N 0.17 benign(0.412) TCGA-78-8640-01 1 216052257 216052257 G T USH2A Missense_Mutation p.L2803I 0.13 benign(0.256) TCGA-78-8640-01 1 216741360 216741360 G T ESRRG Missense_Mutation p.P229T 0.28 tolerated(0.43) benign(0.006) TCGA-78-8640-01 1 225155208 225155208 G T DNAH14 Missense_Mutation p.D192Y 0.09 deleterious(0) probably_damaging(0.993) TCGA-78-8640-01 1 232941054 232941054 C G MAP10 Missense_Mutation p.H95Q 0.12 tolerated_low_confidence(0.33) benign(0.402) TCGA-78-8640-01 1 234367227 234367227 C T SLC35F3 Silent p.A116A 0.11 TCGA-78-8640-01 1 237711840 237711840 G A RYR2 Missense_Mutation p.V1006M 0.38 probably_damaging(0.992) TCGA-78-8640-01 1 237754132 237754132 T A RYR2 Missense_Mutation p.L1334M 0.30 possibly_damaging(0.804) TCGA-78-8640-01 1 237777698 237777698 T A RYR2 Missense_Mutation p.L1757H 0.12 benign(0.052) TCGA-78-8640-01 1 243652396 243652396 T A SDCCAG8 Missense_Mutation p.L689Q 0.12 tolerated(0.35) benign(0.401) TCGA-78-8640-01 1 244579375 244579375 G A ADSS Missense_Mutation p.A359V 0.14 tolerated(0.1) probably_damaging(0.999) TCGA-78-8640-01 1 247655050 247655050 T A OR2W5 RNA 0.15 TCGA-78-8640-01 1 247752051 247752051 C G OR2G2 Missense_Mutation p.C130W 0.11 deleterious(0) probably_damaging(1) TCGA-78-8640-01 1 247752598 247752598 G C OR2G2 Missense_Mutation p.G313R 0.27 tolerated(0.22) unknown(0) TCGA-78-8640-01 1 248059735 248059735 C A OR2W3 Missense_Mutation p.P283T 0.44 deleterious(0) probably_damaging(0.994) TCGA-78-8640-01 1 248112706 248112706 A T OR2L8 Missense_Mutation p.M183L 0.12 tolerated(0.56) benign(0.018) TCGA-78-8640-01 1 248402675 248402675 T C OR2M4 Missense_Mutation p.W149R 0.12 deleterious(0) probably_damaging(1) TCGA-78-8640-01 1 248551037 248551037 G T OR2T6 Missense_Mutation p.G43V 0.16 tolerated(0.58) benign(0.045) TCGA-78-8640-01 1 248636759 248636759 C A OR2T3 Silent p.T36T 0.27 TCGA-78-8640-01 1 25254205 25254205 T A RUNX3 Missense_Mutation p.D114V 0.26 deleterious(0) probably_damaging(1) TCGA-78-8640-01 1 26189412 26189412 G C PAQR7 Missense_Mutation p.L307V 0.16 tolerated(0.18) benign(0.222) TCGA-78-8640-01 1 26586262 26586262 A T CEP85 Missense_Mutation p.H437L 0.38 deleterious(0.01) possibly_damaging(0.599) TCGA-78-8640-01 1 28861843 28861843 A G RCC1 Silent p.L235L 0.20 TCGA-78-8640-01 1 32092603 32092603 C A HCRTR1 3'UTR 0.16 TCGA-78-8640-01 1 32202031 32202031 C A BAI2 Intron 0.27 TCGA-78-8640-01 1 38184332 38184332 C A EPHA10 Splice_Site p.X971_splice 0.26 TCGA-78-8640-01 1 38397646 38397646 T A INPP5B Silent p.P157P 0.10 TCGA-78-8640-01 1 40432481 40432481 A G MFSD2A Splice_Site p.X282_splice 0.10 TCGA-78-8640-01 1 46501239 46501239 G T MAST2 Missense_Mutation p.S1633I 0.33 tolerated_low_confidence(0.06) benign(0.303) TCGA-78-8640-01 1 46871941 46871941 C T FAAH Silent p.A284A 0.14 TCGA-78-8640-01 1 52704141 52704141 G A ZFYVE9 Missense_Mutation p.R351K 0.28 tolerated_low_confidence(0.13) benign(0.001) TCGA-78-8640-01 1 53554646 53554646 C A SLC1A7 Missense_Mutation p.R456L 0.14 deleterious(0) probably_damaging(1) TCGA-78-8640-01 1 53974961 53974961 C A GLIS1 Splice_Site p.X513_splice 0.25 TCGA-78-8640-01 1 57192183 57192183 C A C1orf168 Nonsense_Mutation p.E623* 0.20 TCGA-78-8640-01 1 57372382 57372382 T C C8A Missense_Mutation p.L380S 0.28 deleterious(0) possibly_damaging(0.71) TCGA-78-8640-01 1 57399130 57399130 G T C8B Missense_Mutation p.T477K 0.15 tolerated(0.27) benign(0.02) TCGA-78-8640-01 1 6190297 6190297 G A CHD5 Silent p.Y1118Y 0.19 TCGA-78-8640-01 1 6203951 6203951 G C CHD5 Missense_Mutation p.L659V 0.16 tolerated(0.58) benign(0.032) TCGA-78-8640-01 1 68659715 68659715 A G WLS Missense_Mutation p.M99T 0.13 tolerated(0.25) benign(0.004) TCGA-78-8640-01 1 68895421 68895421 C A RPE65 3'UTR 0.20 TCGA-78-8640-01 1 74507441 74507441 G A LRRIQ3 Missense_Mutation p.P392S 0.16 tolerated(0.08) benign(0.039) TCGA-78-8640-01 1 74575206 74575206 C A LRRIQ3 Nonsense_Mutation p.E247* 0.09 TCGA-78-8640-01 1 75037739 75037739 G T C1orf173 Missense_Mutation p.P1219T 0.43 deleterious(0.01) probably_damaging(0.982) TCGA-78-8640-01 1 75055285 75055285 A G C1orf173 Intron 0.21 TCGA-78-8640-01 1 76255022 76255022 A T RABGGTB Missense_Mutation p.Y97F 0.10 tolerated(0.07) probably_damaging(0.979) TCGA-78-8640-01 1 78428501 78428501 G A FUBP1 Missense_Mutation p.P433L 0.09 deleterious(0.03) possibly_damaging(0.874) TCGA-78-8640-01 1 79387383 79387383 A T ELTD1 Missense_Mutation p.L391Q 0.59 deleterious(0.02) benign(0.13) TCGA-78-8640-01 1 79404910 79404910 A T ELTD1 Missense_Mutation p.V120D 0.40 tolerated(0.75) benign(0) TCGA-78-8640-01 1 82415958 82415958 C T LPHN2 Silent p.G428G 0.08 TCGA-78-8640-01 1 85499836 85499836 T A MCOLN3 Silent p.R165R 0.06 TCGA-78-8640-01 1 89519017 89519017 G T GBP1 3'UTR 0.29 TCGA-78-8640-01 1 91180090 91180090 G T BARHL2 Silent p.R283R 0.08 TCGA-78-8640-01 1 91781454 91781454 T C HFM1 Missense_Mutation p.K1020E 0.46 deleterious(0) possibly_damaging(0.472) TCGA-78-8640-01 1 92433764 92433764 C G BRDT Missense_Mutation p.S131C 0.43 deleterious(0) possibly_damaging(0.71) TCGA-78-8640-01 1 985806 985806 G T AGRN Splice_Site p.X1659_splice 0.10 TCGA-78-8640-01 20 11903467 11903467 C T BTBD3 Missense_Mutation p.T241I 0.22 deleterious(0.03) benign(0.105) TCGA-78-8640-01 20 14306661 14306661 C T FLRT3 Missense_Mutation p.E498K 0.12 tolerated(0.67) benign(0.01) TCGA-78-8640-01 20 1617044 1617044 G A SIRPG Silent p.L180L 0.31 TCGA-78-8640-01 20 17349885 17349885 G C PCSK2 Missense_Mutation p.G169A 0.16 deleterious(0) probably_damaging(1) TCGA-78-8640-01 20 23425551 23425551 T A CSTL1 3'UTR 0.19 TCGA-78-8640-01 20 30804481 30804481 G T POFUT1 Missense_Mutation p.G167C 0.12 deleterious(0.04) probably_damaging(0.976) TCGA-78-8640-01 20 34022494 34022494 C T GDF5 Missense_Mutation p.R240Q 0.08 deleterious(0) possibly_damaging(0.857) TCGA-78-8640-01 20 34025254 34025254 G A GDF5 Missense_Mutation p.P152L 0.28 deleterious(0.02) probably_damaging(0.995) TCGA-78-8640-01 20 34214259 34214259 G T CPNE1 Silent p.P511P 0.12 TCGA-78-8640-01 20 34302144 34302144 T A RBM39 Silent p.T353T 0.09 TCGA-78-8640-01 20 34487415 34487415 T A PHF20 Nonsense_Mutation p.L469* 0.15 TCGA-78-8640-01 20 37383728 37383728 T - ACTR5 Frame_Shift_Del p.L302Cfs*33 0.29 TCGA-78-8640-01 20 40049640 40049640 C A CHD6 Missense_Mutation p.A1879S 0.34 tolerated_low_confidence(0.17) benign(0.001) TCGA-78-8640-01 20 45353921 45353921 C G SLC2A10 Missense_Mutation p.N82K 0.21 deleterious(0) probably_damaging(0.937) TCGA-78-8640-01 20 48525054 48525054 C G SPATA2 5'UTR 0.11 TCGA-78-8640-01 20 54824314 54824314 G C MC3R Missense_Mutation p.A139P 0.12 deleterious(0) probably_damaging(1) TCGA-78-8640-01 20 54824514 54824514 C A MC3R Silent p.T205T 0.16 TCGA-78-8640-01 20 55209267 55209267 C A TFAP2C Missense_Mutation p.L289I 0.12 deleterious(0) probably_damaging(0.999) TCGA-78-8640-01 20 57767559 57767559 C T ZNF831 Silent p.T495T 0.19 TCGA-78-8640-01 20 58442798 58442798 T A SYCP2 Missense_Mutation p.R1365W 0.17 deleterious(0) possibly_damaging(0.517) TCGA-78-8640-01 20 58519707 58519707 C T FAM217B Missense_Mutation p.H237Y 0.13 tolerated(0.94) benign(0.015) TCGA-78-8640-01 20 61981345 61981345 C G CHRNA4 Missense_Mutation p.S473T 0.33 tolerated_low_confidence(0.14) benign(0.322) TCGA-78-8640-01 20 62599191 62599191 G A ZNF512B Missense_Mutation p.P38L 0.15 deleterious_low_confidence(0.01) benign(0.027) TCGA-78-8640-01 20 944677 944677 G C RSPO4 Missense_Mutation p.R166G 0.19 deleterious(0) probably_damaging(0.994) TCGA-78-8640-01 20 9546559 9546559 C G PAK7 Missense_Mutation p.R488P 0.21 deleterious(0) probably_damaging(1) TCGA-78-8640-01 21 10862892 10862892 G T IGHV1OR21-1 Missense_Mutation p.G63V 0.10 deleterious(0.02) probably_damaging(0.937) TCGA-78-8640-01 21 16339463 16339463 C A NRIP1 Missense_Mutation p.G351C 0.17 deleterious(0.01) benign(0.04) TCGA-78-8640-01 21 16339464 16339464 C A NRIP1 Missense_Mutation p.M350I 0.17 tolerated(0.58) benign(0) TCGA-78-8640-01 21 41496256 41496256 C T DSCAM Splice_Site p.X1188_splice 0.11 TCGA-78-8640-01 21 42080487 42080487 G C DSCAM Missense_Mutation p.P85R 0.15 deleterious(0.03) possibly_damaging(0.507) TCGA-78-8640-01 21 46021089 46021089 C A KRTAP10-7 Missense_Mutation p.P190T 0.08 deleterious(0.02) unknown(0) TCGA-78-8640-01 21 46047397 46047397 C G KRTAP10-9 Silent p.V103V 0.13 TCGA-78-8640-01 21 46600262 46600262 C T ADARB1 Silent p.V327V 0.19 TCGA-78-8640-01 21 47320983 47320983 G T PCBP3 Missense_Mutation p.A99S 0.15 tolerated(0.1) possibly_damaging(0.861) TCGA-78-8640-01 21 47783678 47783678 C T PCNT Missense_Mutation p.S813F 0.18 possibly_damaging(0.831) TCGA-78-8640-01 22 19035873 19035873 C G DGCR2 Intron 0.18 TCGA-78-8640-01 22 20077225 20077225 A T DGCR8 Missense_Mutation p.D305V 0.17 deleterious(0) probably_damaging(0.988) TCGA-78-8640-01 22 23523711 23523711 G C BCR Silent p.L188L 0.17 TCGA-78-8640-01 22 24219486 24219486 C G SLC2A11 Intron 0.19 TCGA-78-8640-01 22 26164561 26164561 A T MYO18B Missense_Mutation p.Q226H 0.14 tolerated_low_confidence(0.08) benign(0.015) TCGA-78-8640-01 22 35659194 35659194 G T HMGXB4 Missense_Mutation p.R52M 0.16 deleterious(0) probably_damaging(0.935) TCGA-78-8640-01 22 39884744 39884744 G T MGAT3 Missense_Mutation p.W464C 0.15 deleterious(0) probably_damaging(0.995) TCGA-78-8640-01 22 40139715 40139715 T G ENTHD1 Missense_Mutation p.Q598P 0.17 tolerated(0.05) unknown(0) TCGA-78-8640-01 22 41924512 41924512 C G ACO2 Missense_Mutation p.N746K 0.18 deleterious_low_confidence(0.01) benign(0.051) TCGA-78-8640-01 22 43617207 43617207 T C SCUBE1 Silent p.A507A 0.12 TCGA-78-8640-01 22 50278670 50278689 ATGAAAAGACTGAAGTCGGA - ZBED4 Frame_Shift_Del p.M454Gfs*31 0.10 TCGA-78-8640-01 2 101582158 101582158 G T NPAS2 Silent p.V279V 0.10 TCGA-78-8640-01 2 108881408 108881408 C A SULT1C3 Missense_Mutation p.T250N 0.25 deleterious(0.01) possibly_damaging(0.615) TCGA-78-8640-01 2 109383078 109383078 G C RANBP2 Missense_Mutation p.G2028A 0.17 deleterious(0) probably_damaging(1) TCGA-78-8640-01 2 110922275 110922275 G T NPHP1 Missense_Mutation p.A254E 0.11 tolerated(0.06) possibly_damaging(0.735) TCGA-78-8640-01 2 111408179 111408179 G A BUB1 Missense_Mutation p.A716V 0.30 tolerated(0.22) benign(0.014) TCGA-78-8640-01 2 114512772 114512772 C G SLC35F5 Silent p.V81V 0.16 TCGA-78-8640-01 2 11750901 11750901 G T GREB1 Silent p.P918P 0.18 TCGA-78-8640-01 2 118715997 118715997 G C CCDC93 Missense_Mutation p.R317G 0.11 deleterious(0) benign(0.177) TCGA-78-8640-01 2 120383232 120383232 A C PCDP1 Missense_Mutation p.K495T 0.29 tolerated(0.08) benign(0.06) TCGA-78-8640-01 2 120725513 120725513 A G PTPN4 Missense_Mutation p.M887V 0.32 deleterious(0) benign(0.18) TCGA-78-8640-01 2 128747167 128747167 T A SAP130 Missense_Mutation p.Q610L 0.11 deleterious_low_confidence(0) possibly_damaging(0.755) TCGA-78-8640-01 2 131704106 131704106 T C ARHGEF4 Missense_Mutation p.S109P 0.11 deleterious_low_confidence(0.05) benign(0.009) TCGA-78-8640-01 2 132021521 132021521 C G POTEE Silent p.A831A 0.10 TCGA-78-8640-01 2 133489419 133489419 G A NCKAP5 Silent p.D1778D 0.12 TCGA-78-8640-01 2 135911417 135911417 C T RAB3GAP1 Missense_Mutation p.L754F 0.11 deleterious(0) probably_damaging(0.98) TCGA-78-8640-01 2 141253296 141253296 G T LRP1B Missense_Mutation p.Q2958K 0.13 benign(0) TCGA-78-8640-01 2 141459724 141459724 G C LRP1B Missense_Mutation p.I2096M 0.25 benign(0.308) TCGA-78-8640-01 2 150061872 150061872 A G LYPD6B Silent p.A61A 0.27 TCGA-78-8640-01 2 1546343 1546343 A T TPO 3'UTR 0.27 TCGA-78-8640-01 2 155711507 155711507 T C KCNJ3 Silent p.T396T 0.29 TCGA-78-8640-01 2 163393468 163393468 C A KCNH7 Missense_Mutation p.V144L 0.10 tolerated(1) benign(0) TCGA-78-8640-01 2 163393469 163393469 C A KCNH7 Missense_Mutation p.R143S 0.10 tolerated(0.11) benign(0.044) TCGA-78-8640-01 2 163393470 163393470 C T KCNH7 Missense_Mutation p.R143K 0.09 tolerated(0.38) benign(0.001) TCGA-78-8640-01 2 163693208 163693208 C A KCNH7 Missense_Mutation p.C49F 0.21 deleterious(0) probably_damaging(0.999) TCGA-78-8640-01 2 165946873 165946873 C T SCN3A Silent p.E1930E 0.09 TCGA-78-8640-01 2 166771822 166771822 A C TTC21B Missense_Mutation p.I676S 0.27 tolerated(0.08) benign(0.051) TCGA-78-8640-01 2 166929865 166929865 C A SCN1A Intron 0.25 TCGA-78-8640-01 2 167134813 167134813 C A SCN9A Missense_Mutation p.G774V 0.20 tolerated(0.11) probably_damaging(0.921) TCGA-78-8640-01 2 168100533 168100533 T C XIRP2 Silent p.H877H 0.16 TCGA-78-8640-01 2 168106791 168106791 G T XIRP2 Missense_Mutation p.Q2963H 0.09 benign(0.089) TCGA-78-8640-01 2 170487312 170487312 A G PPIG Silent p.K192K 0.30 TCGA-78-8640-01 2 171258165 171258165 G T MYO3B Missense_Mutation p.R698L 0.15 deleterious(0) probably_damaging(0.982) TCGA-78-8640-01 2 171375953 171375953 A T MYO3B Missense_Mutation p.R1160W 0.08 deleterious_low_confidence(0) benign(0.379) TCGA-78-8640-01 2 173853436 173853436 C A RAPGEF4 Missense_Mutation p.L415M 0.23 deleterious(0) probably_damaging(1) TCGA-78-8640-01 2 179360225 179360225 C G PLEKHA3 Missense_Mutation p.N151K 0.14 tolerated(1) benign(0.002) TCGA-78-8640-01 2 179443544 179443544 C T TTN Missense_Mutation p.R22738K 0.12 TCGA-78-8640-01 2 179458544 179458544 C G TTN Missense_Mutation p.D19495H 0.11 TCGA-78-8640-01 2 179553414 179553414 C T TTN Silent p.T10729T 0.11 TCGA-78-8640-01 2 179586807 179586807 G A TTN Missense_Mutation p.A7528V 0.18 TCGA-78-8640-01 2 179616576 179616576 C A TTN Intron 0.11 TCGA-78-8640-01 2 185801992 185801992 G A ZNF804A Silent p.E623E 0.17 TCGA-78-8640-01 2 185802027 185802027 T C ZNF804A Missense_Mutation p.L635S 0.12 tolerated(0.05) probably_damaging(0.986) TCGA-78-8640-01 2 190571803 190571803 C T ANKAR Missense_Mutation p.H684Y 0.10 deleterious(0) probably_damaging(0.993) TCGA-78-8640-01 2 1926197 1926197 C T MYT1L Missense_Mutation p.M448I 0.11 deleterious(0.03) possibly_damaging(0.835) TCGA-78-8640-01 2 197559881 197559881 G C CCDC150 Missense_Mutation p.G541R 0.32 tolerated(0.14) possibly_damaging(0.644) TCGA-78-8640-01 2 197711726 197711726 C A PGAP1 Splice_Site p.X717_splice 0.20 TCGA-78-8640-01 2 198949102 198949102 C G PLCL1 Missense_Mutation p.I287M 0.14 deleterious(0.02) benign(0.313) TCGA-78-8640-01 2 207176100 207176100 C T ZDBF2 Missense_Mutation p.S2283L 0.20 tolerated(0.72) benign(0.307) TCGA-78-8640-01 2 208632263 208632263 G A FZD5 Missense_Mutation p.R401C 0.24 deleterious(0) probably_damaging(0.993) TCGA-78-8640-01 2 210642095 210642095 G T UNC80 Missense_Mutation p.G138C 0.19 probably_damaging(0.998) TCGA-78-8640-01 2 211481179 211481179 T G CPS1 Missense_Mutation p.I873M 0.13 deleterious(0) probably_damaging(0.992) TCGA-78-8640-01 2 219483373 219483373 C T PLCD4 Missense_Mutation p.L85F 0.16 tolerated(1) benign(0.004) TCGA-78-8640-01 2 227985809 227985809 C A COL4A4 Missense_Mutation p.G83V 0.25 probably_damaging(1) TCGA-78-8640-01 2 228882609 228882609 C A SPHKAP Silent p.G987G 0.21 TCGA-78-8640-01 2 234628226 234628226 G C UGT1A4 Missense_Mutation p.V254L 0.09 tolerated(0.23) benign(0.106) TCGA-78-8640-01 2 234775669 234775669 G A MSL3P1 RNA 0.15 TCGA-78-8640-01 2 236817478 236817478 G T AGAP1 Missense_Mutation p.A418S 0.15 tolerated(0.17) possibly_damaging(0.675) TCGA-78-8640-01 2 238242168 238242168 G C COL6A3 Missense_Mutation p.Q3085E 0.08 unknown(0) TCGA-78-8640-01 2 241463257 241463257 C A ANKMY1 Intron 0.19 TCGA-78-8640-01 2 241463258 241463258 C T ANKMY1 Intron 0.19 TCGA-78-8640-01 2 242577084 242577084 C G ATG4B 5'UTR 0.18 TCGA-78-8640-01 2 242707234 242707234 C T D2HGDH Silent p.V472V 0.22 TCGA-78-8640-01 2 25383917 25383917 G T POMC 3'UTR 0.23 TCGA-78-8640-01 2 25967024 25967024 T C ASXL2 Missense_Mutation p.T728A 0.15 tolerated_low_confidence(0.83) benign(0.007) TCGA-78-8640-01 2 26536638 26536638 G C GPR113 Silent p.T422T 0.13 TCGA-78-8640-01 2 27015103 27015103 C T CENPA Missense_Mutation p.R69C 0.36 deleterious(0.02) probably_damaging(0.984) TCGA-78-8640-01 2 27015104 27015104 G T CENPA Missense_Mutation p.R69L 0.36 tolerated(0.06) benign(0.073) TCGA-78-8640-01 2 27454872 27454872 C T CAD Missense_Mutation p.R809W 0.11 deleterious(0) probably_damaging(1) TCGA-78-8640-01 2 27600829 27600829 C T ZNF513 Silent p.L403L 0.16 TCGA-78-8640-01 2 27602975 27602975 C G ZNF513 Missense_Mutation p.E66Q 0.08 tolerated(0.07) possibly_damaging(0.557) TCGA-78-8640-01 2 27603092 27603092 C T ZNF513 Missense_Mutation p.E27K 0.09 tolerated(0.72) benign(0.305) TCGA-78-8640-01 2 27803307 27803307 A G C2orf16 Missense_Mutation p.M1290V 0.14 tolerated(0.35) benign(0) TCGA-78-8640-01 2 32399178 32399178 G T SLC30A6 Missense_Mutation p.G46V 0.30 tolerated(0.6) benign(0.015) TCGA-78-8640-01 2 37481388 37481388 G A PRKD3 Missense_Mutation p.R820C 0.17 deleterious(0) probably_damaging(1) TCGA-78-8640-01 2 39559121 39559121 C A MAP4K3 Missense_Mutation p.G156V 0.29 deleterious(0) probably_damaging(1) TCGA-78-8640-01 2 43783686 43783686 C T THADA Silent p.G824G 0.24 TCGA-78-8640-01 2 44073420 44073420 G - ABCG8 Frame_Shift_Del p.Q99Rfs*6 0.23 TCGA-78-8640-01 2 45169367 45169367 G C SIX3 Missense_Mutation p.G42R 0.12 tolerated_low_confidence(0.08) benign(0.014) TCGA-78-8640-01 2 70502790 70502790 A G PCYOX1 Missense_Mutation p.K284R 0.15 tolerated(0.51) benign(0.05) TCGA-78-8640-01 2 74043571 74043571 C A C2orf78 Missense_Mutation p.L741I 0.31 deleterious(0.04) benign(0.205) TCGA-78-8640-01 2 74867395 74867395 G T M1AP Missense_Mutation p.P3H 0.15 tolerated_low_confidence(0.37) benign(0.003) TCGA-78-8640-01 2 75929319 75929319 C G GCFC2 Intron 0.20 TCGA-78-8640-01 2 80097056 80097056 C A CTNNA2 Missense_Mutation p.Q194K 0.15 deleterious(0.02) probably_damaging(0.973) TCGA-78-8640-01 2 80875066 80875066 T G CTNNA2 3'UTR 0.16 TCGA-78-8640-01 2 85059220 85059220 G T TRABD2A Silent p.G298G 0.18 TCGA-78-8640-01 2 90199072 90199072 G A IGKV1D-12 Missense_Mutation p.S78N 0.12 deleterious(0.02) benign(0.058) TCGA-78-8640-01 2 90249243 90249243 A C IGKV1D-43 Missense_Mutation p.K67Q 0.13 tolerated(0.06) possibly_damaging(0.613) TCGA-78-8640-01 2 95691561 95691561 G A MAL Silent p.G8G 0.32 TCGA-78-8640-01 3 100617659 100617659 G T ABI3BP Missense_Mutation p.F143L 0.11 tolerated(0.27) benign(0.153) TCGA-78-8640-01 3 101540853 101540853 G T NXPE3 3'UTR 0.14 TCGA-78-8640-01 3 108403079 108403079 G T DZIP3 Missense_Mutation p.G967V 0.10 deleterious(0.04) probably_damaging(0.939) TCGA-78-8640-01 3 108751647 108751647 C A MORC1 Missense_Mutation p.L495F 0.15 deleterious(0) probably_damaging(0.999) TCGA-78-8640-01 3 110845181 110845181 A G PVRL3 Silent p.S356S 0.29 TCGA-78-8640-01 3 110852792 110852792 A G PVRL3 Silent p.Q460Q 0.13 TCGA-78-8640-01 3 111297999 111297999 C T CD96 Silent p.F239F 0.18 TCGA-78-8640-01 3 111785310 111785310 G C TMPRSS7 Missense_Mutation p.D417H 0.14 deleterious(0) probably_damaging(0.999) TCGA-78-8640-01 3 130400415 130400415 C A PIK3R4 Missense_Mutation p.V1210L 0.21 deleterious(0.01) possibly_damaging(0.709) TCGA-78-8640-01 3 135722317 135722317 G A PPP2R3A Silent p.Q659Q 0.20 TCGA-78-8640-01 3 136141254 136141254 C G STAG1 Missense_Mutation p.E679Q 0.15 tolerated(0.06) possibly_damaging(0.501) TCGA-78-8640-01 3 14813695 14813695 C T C3orf20 Silent p.L873L 0.27 TCGA-78-8640-01 3 14862555 14862555 G A FGD5 Silent p.L659L 0.13 TCGA-78-8640-01 3 15057714 15057714 G T NR2C2 Missense_Mutation p.R129L 0.14 tolerated(0.14) benign(0.005) TCGA-78-8640-01 3 155643029 155643029 G C GMPS Splice_Site p.X479_splice 0.12 TCGA-78-8640-01 3 164906114 164906114 G T SLITRK3 Missense_Mutation p.H835Q 0.13 tolerated(0.48) benign(0.006) TCGA-78-8640-01 3 178748673 178748673 G C ZMAT3 Missense_Mutation p.P129A 0.12 tolerated(0.99) benign(0.001) TCGA-78-8640-01 3 184290795 184290795 G A EPHB3 Silent p.A229A 0.14 TCGA-78-8640-01 3 195594618 195594618 G A TNK2 Missense_Mutation p.P914S 0.43 tolerated_low_confidence(0.63) benign(0.164) TCGA-78-8640-01 3 3134047 3134047 C G IL5RA Splice_Site p.X286_splice 0.15 TCGA-78-8640-01 3 38763885 38763885 G A SCN10A Missense_Mutation p.P1124L 0.15 deleterious(0.04) benign(0.367) TCGA-78-8640-01 3 39230561 39230561 T A XIRP1 Missense_Mutation p.T126S 0.12 deleterious(0) possibly_damaging(0.694) TCGA-78-8640-01 3 42750505 42750505 C T CCDC13 Silent p.Q705Q 0.15 TCGA-78-8640-01 3 42772081 42772081 C A CCDC13 Missense_Mutation p.R532S 0.13 tolerated(0.11) probably_damaging(0.973) TCGA-78-8640-01 3 42906034 42906034 G T ACKR2 Missense_Mutation p.D14Y 0.18 tolerated(0.24) benign(0.326) TCGA-78-8640-01 3 4355405 4355405 C A SETMAR Missense_Mutation p.A327D 0.23 deleterious_low_confidence(0.02) benign(0.139) TCGA-78-8640-01 3 43744032 43744032 C A ABHD5 Missense_Mutation p.N153K 0.18 deleterious(0) possibly_damaging(0.636) TCGA-78-8640-01 3 46414769 46414769 A G CCR5 Missense_Mutation p.R126G 0.18 deleterious(0) probably_damaging(0.999) TCGA-78-8640-01 3 4715045 4715045 G T ITPR1 Missense_Mutation p.E795D 0.12 tolerated(0.1) benign(0.357) TCGA-78-8640-01 3 48602914 48602914 T C COL7A1 Missense_Mutation p.Y2819C 0.28 probably_damaging(0.977) TCGA-78-8640-01 3 48663409 48663409 T C SLC26A6 3'UTR 0.14 TCGA-78-8640-01 3 49569741 49569741 C T DAG1 Silent p.P599P 0.13 TCGA-78-8640-01 3 50102541 50102541 G A RBM6 Silent p.K888K 0.17 TCGA-78-8640-01 3 51897414 51897414 C T IQCF2 3'UTR 0.15 TCGA-78-8640-01 3 51969674 51969674 T C RRP9 Missense_Mutation p.Y257C 0.08 deleterious(0) probably_damaging(0.976) TCGA-78-8640-01 3 73433873 73433873 C A PDZRN3 Missense_Mutation p.S615I 0.18 deleterious(0.02) probably_damaging(0.924) TCGA-78-8640-01 3 74411128 74411128 A T CNTN3 Missense_Mutation p.L426Q 0.16 tolerated(0.11) benign(0.143) TCGA-78-8640-01 3 74414807 74414807 C A CNTN3 Silent p.V331V 0.11 TCGA-78-8640-01 3 7721755 7721755 C A GRM7 Missense_Mutation p.T824K 0.20 deleterious(0) possibly_damaging(0.716) TCGA-78-8640-01 3 89498398 89498398 G T EPHA3 Missense_Mutation p.W790C 0.08 deleterious(0) probably_damaging(0.99) TCGA-78-8640-01 3 89499488 89499488 C A EPHA3 Silent p.G886G 0.08 TCGA-78-8640-01 3 93699122 93699122 C A ARL13B 5'UTR 0.21 TCGA-78-8640-01 3 97888297 97888297 T G OR5H15 Missense_Mutation p.Y252D 0.12 deleterious(0) probably_damaging(0.988) TCGA-78-8640-01 3 98299601 98299601 G A CPOX Missense_Mutation p.H431Y 0.08 tolerated(0.12) benign(0.012) TCGA-78-8640-01 3 9985088 9985088 G A CRELD1 Missense_Mutation p.V313M 0.21 deleterious(0) benign(0.097) TCGA-78-8640-01 4 100756869 100756869 A T DAPP1 Missense_Mutation p.N64I 0.18 deleterious(0.01) benign(0.442) TCGA-78-8640-01 4 103822407 103822407 A G SLC9B1 Missense_Mutation p.V472A 0.08 deleterious(0.01) benign(0.196) TCGA-78-8640-01 4 104030188 104030188 C T CENPE Missense_Mutation p.E2595K 0.19 probably_damaging(0.939) TCGA-78-8640-01 4 104070561 104070561 T A CENPE Missense_Mutation p.Q1134L 0.25 benign(0.282) TCGA-78-8640-01 4 104082500 104082500 C A CENPE Nonsense_Mutation p.E653* 0.15 TCGA-78-8640-01 4 106155994 106155994 G A TET2 Missense_Mutation p.D299N 0.08 deleterious(0.05) possibly_damaging(0.539) TCGA-78-8640-01 4 114288811 114288811 C T ANK2 Missense_Mutation p.H3708Y 0.24 possibly_damaging(0.478) TCGA-78-8640-01 4 115544098 115544098 C A UGT8 Missense_Mutation p.A21D 0.13 deleterious(0) probably_damaging(0.999) TCGA-78-8640-01 4 119678977 119678977 T C SEC24D Silent p.P440P 0.18 TCGA-78-8640-01 4 120221657 120221657 C A C4orf3 Missense_Mutation p.D145Y 0.16 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-78-8640-01 4 123277817 123277817 G C KIAA1109 Missense_Mutation p.E4848Q 0.13 probably_damaging(0.99) TCGA-78-8640-01 4 123663171 123663171 G T BBS12 Nonsense_Mutation p.E42* 0.18 TCGA-78-8640-01 4 126402712 126402712 A T FAT4 Missense_Mutation p.K4212I 0.15 benign(0.312) TCGA-78-8640-01 4 126411315 126411315 C G FAT4 Missense_Mutation p.H4446Q 0.15 benign(0.002) TCGA-78-8640-01 4 129752895 129752895 G C JADE1 5'UTR 0.16 TCGA-78-8640-01 4 13338250 13338250 G A HSP90AB2P RNA 0.17 TCGA-78-8640-01 4 151246962 151246962 A C LRBA Missense_Mutation p.V2495G 0.13 deleterious(0) benign(0.031) TCGA-78-8640-01 4 151511892 151511892 C A LRBA Missense_Mutation p.D2067Y 0.16 deleterious(0) possibly_damaging(0.855) TCGA-78-8640-01 4 152025386 152025386 C T RPS3A Silent p.L207L 0.11 TCGA-78-8640-01 4 154318395 154318395 G T MND1 Nonsense_Mutation p.E126* 0.13 TCGA-78-8640-01 4 154626144 154626144 G C TLR2 Missense_Mutation p.K695N 0.13 deleterious(0) probably_damaging(0.983) TCGA-78-8640-01 4 155287503 155287503 T A DCHS2 Missense_Mutation p.S185C 0.25 deleterious(0) possibly_damaging(0.903) TCGA-78-8640-01 4 15995667 15995667 G T PROM1 Nonsense_Mutation p.Y570* 0.12 TCGA-78-8640-01 4 164271727 164271727 C A NPY5R Missense_Mutation p.S101Y 0.26 tolerated(0.07) benign(0.238) TCGA-78-8640-01 4 164394876 164394876 T C TKTL2 Missense_Mutation p.N4S 0.21 tolerated(0.49) benign(0) TCGA-78-8640-01 4 165890742 165890742 G C TRIM61 Missense_Mutation p.S138C 0.15 deleterious(0.04) possibly_damaging(0.706) TCGA-78-8640-01 4 166235212 166235212 A T KLHL2 Silent p.V505V 0.17 TCGA-78-8640-01 4 169279266 169279266 C A DDX60L 3'UTR 0.13 TCGA-78-8640-01 4 17524557 17524557 C G CLRN2 Silent p.A108A 0.11 TCGA-78-8640-01 4 186425735 186425735 G C PDLIM3 Missense_Mutation p.R267G 0.34 deleterious(0) probably_damaging(0.984) TCGA-78-8640-01 4 366543 366543 G C ZNF141 Missense_Mutation p.C106S 0.10 deleterious(0.03) benign(0.074) TCGA-78-8640-01 4 48567661 48567661 G C FRYL Missense_Mutation p.L1073V 0.15 deleterious(0.01) possibly_damaging(0.867) TCGA-78-8640-01 4 48583469 48583469 G A FRYL Missense_Mutation p.R714W 0.16 deleterious(0) probably_damaging(0.986) TCGA-78-8640-01 4 48996698 48996698 A T CWH43 Nonsense_Mutation p.R192* 0.10 TCGA-78-8640-01 4 628498 628498 C A PDE6B Silent p.L167L 0.19 TCGA-78-8640-01 4 68544212 68544212 C A UBA6 Missense_Mutation p.D100Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-78-8640-01 4 69344567 69344567 G T TMPRSS11E Missense_Mutation p.G323V 0.12 deleterious(0) probably_damaging(1) TCGA-78-8640-01 4 69796263 69796263 C A UGT2A3 Splice_Site p.X435_splice 0.12 TCGA-78-8640-01 4 70361605 70361605 C A UGT2B4 5'UTR 0.16 TCGA-78-8640-01 4 70715155 70715155 C A SULT1E1 Missense_Mutation p.V166F 0.12 deleterious(0) probably_damaging(0.995) TCGA-78-8640-01 4 76434498 76434498 G A RCHY1 Silent p.C33C 0.21 TCGA-78-8640-01 4 79396614 79396614 G T FRAS1 Missense_Mutation p.G2569W 0.16 probably_damaging(1) TCGA-78-8640-01 4 80828601 80828601 G A ANTXR2 Silent p.S483S 0.14 TCGA-78-8640-01 4 83867567 83867567 T A LIN54 Missense_Mutation p.T338S 0.11 deleterious(0) probably_damaging(0.917) TCGA-78-8640-01 4 8470167 8470167 C T TRMT44 Intron 0.18 TCGA-78-8640-01 4 86403 86403 G A Z95704.2 RNA 0.14 TCGA-78-8640-01 4 90830461 90830461 C - MMRN1 Frame_Shift_Del p.T221Qfs*2 0.20 TCGA-78-8640-01 4 9783976 9783976 C A DRD5 Missense_Mutation p.P108H 0.13 deleterious(0) probably_damaging(0.987) TCGA-78-8640-01 5 102440274 102440274 T G GIN1 Missense_Mutation p.M204L 0.15 tolerated(0.32) benign(0.017) TCGA-78-8640-01 5 107216681 107216681 C G FBXL17 Intron 0.13 TCGA-78-8640-01 5 115827452 115827452 G A SEMA6A Silent p.N173N 0.18 TCGA-78-8640-01 5 118485974 118485974 G T DMXL1 Missense_Mutation p.E1484D 0.20 deleterious(0) probably_damaging(0.999) TCGA-78-8640-01 5 131409791 131409791 C T CSF2 Silent p.V59V 0.16 TCGA-78-8640-01 5 131539795 131539795 G T P4HA2 Silent p.A377A 0.05 TCGA-78-8640-01 5 13735298 13735298 T A DNAH5 Silent p.L3901L 0.37 TCGA-78-8640-01 5 137427049 137427049 G T WNT8A 3'UTR 0.16 TCGA-78-8640-01 5 137488308 137488308 G A BRD8 Missense_Mutation p.P907S 0.16 deleterious_low_confidence(0.04) benign(0.018) TCGA-78-8640-01 5 138655116 138655116 G C MATR3 Missense_Mutation p.D510H 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-78-8640-01 5 140202981 140202981 G T PCDHA5 Missense_Mutation p.V541L 0.27 tolerated_low_confidence(0.17) benign(0.247) TCGA-78-8640-01 5 140515612 140515612 C T PCDHB5 Missense_Mutation p.A199V 0.18 tolerated_low_confidence(0.11) benign(0.011) TCGA-78-8640-01 5 140531995 140531995 G C PCDHB6 Silent p.S719S 0.17 TCGA-78-8640-01 5 141008845 141008845 T G HDAC3 Missense_Mutation p.I169L 0.12 deleterious(0) probably_damaging(0.999) TCGA-78-8640-01 5 143539985 143539985 G A YIPF5 Silent p.V250V 0.20 TCGA-78-8640-01 5 147830794 147830794 T C HTR4 Missense_Mutation p.K373R 0.11 tolerated_low_confidence(0.62) benign(0.079) TCGA-78-8640-01 5 1489874 1489874 C T LPCAT1 Missense_Mutation p.G198E 0.24 deleterious(0.01) probably_damaging(0.955) TCGA-78-8640-01 5 149212622 149212622 C T PPARGC1B Missense_Mutation p.S329F 0.40 deleterious(0.04) benign(0.215) TCGA-78-8640-01 5 150948476 150948476 A T FAT2 Missense_Mutation p.L6Q 0.22 probably_damaging(0.987) TCGA-78-8640-01 5 153144051 153144051 C A GRIA1 Silent p.I637I 0.17 TCGA-78-8640-01 5 156184629 156184629 C A SGCD Missense_Mutation p.P205T 0.26 tolerated(0.05) possibly_damaging(0.882) TCGA-78-8640-01 5 156184638 156184638 G A SGCD Missense_Mutation p.V208M 0.22 deleterious(0.03) possibly_damaging(0.554) TCGA-78-8640-01 5 156349143 156349143 G T TIMD4 Missense_Mutation p.L327I 0.33 deleterious(0.01) possibly_damaging(0.723) TCGA-78-8640-01 5 170162957 170162957 T C KCNIP1 3'Flank 0.29 TCGA-78-8640-01 5 178359304 178359304 G T ZFP2 Missense_Mutation p.E330D 0.10 tolerated(0.31) benign(0.012) TCGA-78-8640-01 5 178413499 178413499 C T GRM6 Missense_Mutation p.A586T 0.16 deleterious(0) benign(0.2) TCGA-78-8640-01 5 179263665 179263665 G A SQSTM1 3'UTR 0.55 TCGA-78-8640-01 5 31322950 31322950 G C CDH6 Silent p.L636L 0.16 TCGA-78-8640-01 5 35954297 35954297 C A UGT3A1 3'UTR 0.13 TCGA-78-8640-01 5 36677181 36677181 G T SLC1A3 Missense_Mutation p.C252F 0.38 deleterious(0) probably_damaging(0.94) TCGA-78-8640-01 5 38338847 38338847 G T EGFLAM Missense_Mutation p.L85F 0.40 deleterious_low_confidence(0.04) benign(0.094) TCGA-78-8640-01 5 40681161 40681161 C T PTGER4 Silent p.T22T 0.18 TCGA-78-8640-01 5 40843532 40843532 C A CARD6 Missense_Mutation p.P188T 0.18 deleterious(0.01) probably_damaging(0.911) TCGA-78-8640-01 5 40981624 40981624 G T C7 Silent p.G827G 0.12 TCGA-78-8640-01 5 41149362 41149362 A T C6 Nonsense_Mutation p.Y868* 0.17 TCGA-78-8640-01 5 41381976 41381976 G T PLCXD3 Missense_Mutation p.T255N 0.18 deleterious(0) probably_damaging(0.992) TCGA-78-8640-01 5 41904501 41904501 G C C5orf51 Missense_Mutation p.R11P 0.35 deleterious_low_confidence(0.02) unknown(0) TCGA-78-8640-01 5 43543193 43543193 T C PAIP1 Missense_Mutation p.Y216C 0.50 deleterious(0.01) possibly_damaging(0.785) TCGA-78-8640-01 5 45303771 45303771 T A HCN1 Missense_Mutation p.Q516H 0.49 deleterious(0.01) probably_damaging(0.993) TCGA-78-8640-01 5 453722 453722 C T EXOC3 Missense_Mutation p.T201I 0.18 tolerated(0.2) probably_damaging(0.992) TCGA-78-8640-01 5 45645307 45645307 A T HCN1 Missense_Mutation p.Y277N 0.12 deleterious(0) probably_damaging(0.999) TCGA-78-8640-01 5 55422859 55422859 C G ANKRD55 Missense_Mutation p.E229D 0.19 tolerated(0.06) benign(0.055) TCGA-78-8640-01 5 71739768 71739768 C A ZNF366 Missense_Mutation p.G684W 0.17 deleterious_low_confidence(0.01) benign(0.365) TCGA-78-8640-01 5 72469361 72469361 C G TMEM174 Silent p.S97S 0.13 TCGA-78-8640-01 5 79030449 79030449 C G CMYA5 Missense_Mutation p.S1954C 0.15 benign(0.431) TCGA-78-8640-01 5 79033880 79033880 G T CMYA5 Missense_Mutation p.V3098L 0.23 benign(0.052) TCGA-78-8640-01 5 79616984 79616984 T A SPZ1 Nonsense_Mutation p.L317* 0.14 TCGA-78-8640-01 5 80809459 80809459 T A SSBP2 Silent p.P120P 0.19 TCGA-78-8640-01 5 81608566 81608566 C T ATP6AP1L Missense_Mutation p.R90C 0.21 deleterious(0) possibly_damaging(0.899) TCGA-78-8640-01 5 88025083 88025083 G T MEF2C Missense_Mutation p.Q316K 0.19 deleterious(0) benign(0.076) TCGA-78-8640-01 6 100897278 100897278 C A SIM1 Missense_Mutation p.L168F 0.12 deleterious(0) possibly_damaging(0.798) TCGA-78-8640-01 6 116601022 116601022 G C TSPYL1 5'UTR 0.18 TCGA-78-8640-01 6 117662732 117662732 C A ROS1 Missense_Mutation p.W1578L 0.18 deleterious(0) possibly_damaging(0.881) TCGA-78-8640-01 6 136512891 136512891 A T PDE7B Missense_Mutation p.R422S 0.25 tolerated_low_confidence(1) benign(0.001) TCGA-78-8640-01 6 146350979 146350979 G C GRM1 Missense_Mutation p.C109S 0.21 deleterious(0) probably_damaging(1) TCGA-78-8640-01 6 149833291 149833291 C G PPIL4 Missense_Mutation p.Q409H 0.15 deleterious(0.03) benign(0.001) TCGA-78-8640-01 6 152755061 152755061 C T SYNE1 Missense_Mutation p.V1444M 0.19 benign(0.327) TCGA-78-8640-01 6 157528564 157528564 G A ARID1B Missense_Mutation p.D2097N 0.13 probably_damaging(0.996) TCGA-78-8640-01 6 160906946 160906946 C T LPAL2 RNA 0.16 TCGA-78-8640-01 6 161027691 161027691 C A LPA Splice_Site p.X868_splice 0.10 TCGA-78-8640-01 6 163235181 163235181 G A PACRG Silent p.V53V 0.09 TCGA-78-8640-01 6 167571269 167571269 C A GPR31 Silent p.V17V 0.20 TCGA-78-8640-01 6 24596512 24596512 C A KIAA0319 Missense_Mutation p.W130C 0.29 deleterious(0.05) possibly_damaging(0.885) TCGA-78-8640-01 6 25726789 25726789 A G HIST1H2AA 5'UTR 0.10 TCGA-78-8640-01 6 26021164 26021164 C G HIST1H3A 3'UTR 0.26 TCGA-78-8640-01 6 27861210 27861210 T C HIST1H2BO 5'UTR 0.36 TCGA-78-8640-01 6 28334083 28334083 G A ZKSCAN3 3'UTR 0.25 TCGA-78-8640-01 6 28540909 28540909 C T SCAND3 Silent p.V919V 0.31 TCGA-78-8640-01 6 3012804 3012804 A G NQO2 Missense_Mutation p.N67D 0.37 tolerated(0.49) benign(0.015) TCGA-78-8640-01 6 31839280 31839280 G A SLC44A4 Silent p.T196T 0.12 TCGA-78-8640-01 6 32017802 32017802 C A TNXB 5'Flank 0.24 TCGA-78-8640-01 6 4052197 4052197 G C PRPF4B Missense_Mutation p.K727N 0.31 deleterious(0) unknown(0) TCGA-78-8640-01 6 4068903 4068903 C T FAM217A 3'UTR 0.20 TCGA-78-8640-01 6 41185530 41185530 C A TREML3P RNA 0.24 TCGA-78-8640-01 6 42832781 42832781 G T GLTSCR1L Missense_Mutation p.R946I 0.12 deleterious_low_confidence(0.02) benign(0.394) TCGA-78-8640-01 6 43155093 43155093 G T CUL9 Missense_Mutation p.W499C 0.09 deleterious(0) probably_damaging(0.997) TCGA-78-8640-01 6 43271893 43271893 C G SLC22A7 Missense_Mutation p.I501M 0.20 tolerated(0.1) possibly_damaging(0.593) TCGA-78-8640-01 6 44106231 44106231 G T TMEM63B Missense_Mutation p.W128C 0.20 deleterious(0) probably_damaging(0.998) TCGA-78-8640-01 6 49676855 49676855 C G CRISP2 Missense_Mutation p.A19P 0.14 deleterious(0.02) possibly_damaging(0.883) TCGA-78-8640-01 6 51618136 51618136 G A PKHD1 Missense_Mutation p.T2938M 0.23 tolerated(0.43) benign(0.002) TCGA-78-8640-01 6 51900449 51900449 C A PKHD1 Silent p.S1056S 0.28 TCGA-78-8640-01 6 74524753 74524753 G T CD109 Missense_Mutation p.R1273I 0.32 deleterious(0) possibly_damaging(0.718) TCGA-78-8640-01 6 80201433 80201433 C A LCA5 Missense_Mutation p.D324Y 0.16 deleterious(0) probably_damaging(0.986) TCGA-78-8640-01 6 80634687 80634687 A T ELOVL4 Missense_Mutation p.N117K 0.14 tolerated(0.35) benign(0.027) TCGA-78-8640-01 6 87725434 87725434 A - HTR1E Frame_Shift_Del p.I128Lfs*14 0.16 TCGA-78-8640-01 6 88854096 88854096 T A CNR1 Nonsense_Mutation p.K300* 0.33 TCGA-78-8640-01 6 89324063 89324063 C T RNGTT Missense_Mutation p.E520K 0.11 tolerated(0.17) benign(0.061) TCGA-78-8640-01 6 89600224 89600224 C A RNGTT Missense_Mutation p.D296Y 0.24 deleterious(0) probably_damaging(1) TCGA-78-8640-01 6 97533169 97533169 G A KLHL32 Silent p.V193V 0.16 TCGA-78-8640-01 6 97634411 97634411 T A MMS22L Missense_Mutation p.Q732L 0.17 deleterious(0.01) benign(0.051) TCGA-78-8640-01 7 100280097 100280097 T A GIGYF1 Missense_Mutation p.Y870F 0.12 tolerated(0.2) probably_damaging(0.952) TCGA-78-8640-01 7 101459331 101459331 G C CUX1 Silent p.S7S 0.11 TCGA-78-8640-01 7 11022739 11022739 G T PHF14 Nonsense_Mutation p.E285* 0.20 TCGA-78-8640-01 7 114302195 114302195 G T FOXP2 Missense_Mutation p.V600L 0.13 deleterious(0) probably_damaging(0.969) TCGA-78-8640-01 7 11633068 11633068 G - THSD7A Frame_Shift_Del p.Q362Rfs*26 0.26 TCGA-78-8640-01 7 120770217 120770217 G T CPED1 Missense_Mutation p.M482I 0.38 tolerated(0.27) benign(0.065) TCGA-78-8640-01 7 122338136 122338136 G T RNF133 Missense_Mutation p.H279Q 0.47 deleterious(0) probably_damaging(0.999) TCGA-78-8640-01 7 12263979 12263979 G T TMEM106B Missense_Mutation p.V137F 0.13 tolerated(0.06) benign(0.035) TCGA-78-8640-01 7 126544083 126544083 G C GRM8 Missense_Mutation p.Q321E 0.55 tolerated(0.27) benign(0.294) TCGA-78-8640-01 7 129770468 129770468 G C KLHDC10 Missense_Mutation p.S404T 0.24 tolerated(0.18) benign(0.043) TCGA-78-8640-01 7 141352706 141352706 C T AGK Silent p.L417L 0.27 TCGA-78-8640-01 7 150389780 150389780 G T GIMAP2 Missense_Mutation p.D136Y 0.34 deleterious(0.02) probably_damaging(0.925) TCGA-78-8640-01 7 18066953 18066953 G T PRPS1L1 Silent p.V151V 0.11 TCGA-78-8640-01 7 20766705 20766705 T A ABCB5 Missense_Mutation p.L890I 0.21 tolerated(0.11) probably_damaging(0.992) TCGA-78-8640-01 7 25264615 25264615 C A NPVF 3'UTR 0.21 TCGA-78-8640-01 7 34006120 34006120 A T BMPER Missense_Mutation p.S117C 0.20 deleterious(0) probably_damaging(1) TCGA-78-8640-01 7 35733845 35733845 C G HERPUD2 Missense_Mutation p.W32C 0.16 deleterious(0) probably_damaging(1) TCGA-78-8640-01 7 35734004 35734004 T C HERPUD2 5'UTR 0.13 TCGA-78-8640-01 7 39243895 39243895 G T POU6F2 Missense_Mutation p.Q84H 0.11 deleterious_low_confidence(0) benign(0.066) TCGA-78-8640-01 7 43484586 43484586 G A HECW1 Silent p.T605T 0.12 TCGA-78-8640-01 7 50467627 50467627 C A IKZF1 Missense_Mutation p.L246M 0.12 deleterious(0.03) benign(0.085) TCGA-78-8640-01 7 54617721 54617721 C G VSTM2A Silent p.P164P 0.14 TCGA-78-8640-01 7 64450777 64450777 C G ZNF117 5'UTR 0.19 TCGA-78-8640-01 7 71134977 71134977 T A WBSCR17 Silent p.G429G 0.13 TCGA-78-8640-01 7 71142265 71142265 T C WBSCR17 Missense_Mutation p.Y492H 0.08 tolerated(0.17) benign(0.005) TCGA-78-8640-01 7 71571179 71571179 G A CALN1 Silent p.S115S 0.29 TCGA-78-8640-01 7 72658046 72658046 T C GTF2IRD2P1 RNA 0.14 TCGA-78-8640-01 7 72742683 72742683 G C FKBP6 Missense_Mutation p.A55P 0.13 deleterious(0.01) benign(0.348) TCGA-78-8640-01 7 75988083 75988083 C A YWHAG Nonsense_Mutation p.E15* 0.09 TCGA-78-8640-01 7 75988234 75988234 C A YWHAG 5'UTR 0.57 TCGA-78-8640-01 7 76112138 76112138 C T DTX2 Silent p.V194V 0.16 TCGA-78-8640-01 7 78256541 78256541 G A MAGI2 Missense_Mutation p.H145Y 0.13 deleterious(0) possibly_damaging(0.453) TCGA-78-8640-01 7 86415744 86415744 C G GRM3 Nonsense_Mutation p.Y212* 0.13 TCGA-78-8640-01 7 87170749 87170749 T G ABCB1 Missense_Mutation p.K748T 0.12 tolerated(0.12) benign(0.288) TCGA-78-8640-01 7 87214952 87214952 T A ABCB1 Silent p.G54G 0.11 TCGA-78-8640-01 7 90613533 90613533 G C CDK14 Missense_Mutation p.D322H 0.10 deleterious(0.01) possibly_damaging(0.78) TCGA-78-8640-01 7 95216342 95216342 C G PDK4 Missense_Mutation p.D359H 0.10 deleterious(0) probably_damaging(1) TCGA-78-8640-01 7 99631893 99631893 G A ZKSCAN1 3'UTR 0.14 TCGA-78-8640-01 8 100168787 100168787 A C VPS13B Missense_Mutation p.N675T 0.16 tolerated(0.22) benign(0) TCGA-78-8640-01 8 101076197 101076197 C T RGS22 Missense_Mutation p.E267K 0.11 tolerated(0.41) benign(0.049) TCGA-78-8640-01 8 101601151 101601151 G C SNX31 Silent p.L345L 0.10 TCGA-78-8640-01 8 102570770 102570770 G T GRHL2 Silent p.R136R 0.10 TCGA-78-8640-01 8 110980335 110980336 - C KCNV1 Frame_Shift_Ins p.D496Rfs*2 0.21 TCGA-78-8640-01 8 113304867 113304867 A T CSMD3 Missense_Mutation p.V2896E 0.12 deleterious(0.01) benign(0.058) TCGA-78-8640-01 8 134125759 134125759 G A TG Missense_Mutation p.V2556I 0.30 tolerated(0.63) benign(0.013) TCGA-78-8640-01 8 143999173 143999173 G T CYP11B2 Silent p.A28A 0.09 TCGA-78-8640-01 8 143999174 143999174 G T CYP11B2 Missense_Mutation p.A28D 0.09 deleterious(0) probably_damaging(0.963) TCGA-78-8640-01 8 144391652 144391652 C T TOP1MT Missense_Mutation p.A589T 0.19 tolerated(0.18) benign(0.385) TCGA-78-8640-01 8 144464836 144464836 G C RHPN1 3'UTR 0.30 TCGA-78-8640-01 8 144620208 144620208 G A ZC3H3 Silent p.S443S 0.15 TCGA-78-8640-01 8 144657399 144657399 C A NAPRT1 Missense_Mutation p.V470L 0.12 deleterious(0.01) benign(0.144) TCGA-78-8640-01 8 2088646 2088646 A T MYOM2 Missense_Mutation p.K1267N 0.11 tolerated(0.22) benign(0.01) TCGA-78-8640-01 8 37734903 37734903 T A RAB11FIP1 Nonsense_Mutation p.K180* 0.32 TCGA-78-8640-01 8 40011157 40011157 G T C8orf4 Missense_Mutation p.V36L 0.22 tolerated(0.14) probably_damaging(0.972) TCGA-78-8640-01 8 53454951 53454951 C G FAM150A Splice_Site p.X82_splice 0.26 TCGA-78-8640-01 8 61777757 61777757 G T CHD7 Missense_Mutation p.M2753I 0.21 benign(0.05) TCGA-78-8640-01 8 62212461 62212461 T C CLVS1 Silent p.H25H 0.17 TCGA-78-8640-01 8 63938819 63938819 T C GGH Missense_Mutation p.T133A 0.35 deleterious(0) probably_damaging(0.94) TCGA-78-8640-01 8 65528405 65528405 G C CYP7B1 Silent p.P231P 0.19 TCGA-78-8640-01 8 72935158 72935158 G A TRPA1 Missense_Mutation p.H1115Y 0.19 deleterious_low_confidence(0.05) benign(0.263) TCGA-78-8640-01 8 73848403 73848403 G C KCNB2 Missense_Mutation p.L271F 0.24 tolerated(0.09) probably_damaging(0.98) TCGA-78-8640-01 8 87588009 87588009 C G CNGB3 3'UTR 0.21 TCGA-78-8640-01 8 92301364 92301364 G T SLC26A7 Missense_Mutation p.G65V 0.11 deleterious(0) probably_damaging(1) TCGA-78-8640-01 9 102888741 102888741 G T INVS Missense_Mutation p.L61F 0.43 tolerated(0.17) benign(0.411) TCGA-78-8640-01 9 103009039 103009039 A G INVS Missense_Mutation p.I350V 0.31 tolerated(0.14) benign(0.401) TCGA-78-8640-01 9 103207423 103207423 A T MSANTD3 Intron 0.31 TCGA-78-8640-01 9 113141644 113141644 G T SVEP1 Nonsense_Mutation p.S3464* 0.15 TCGA-78-8640-01 9 115652031 115652031 C T SLC46A2 Missense_Mutation p.E311K 0.35 tolerated(0.27) benign(0.052) TCGA-78-8640-01 9 117002713 117002713 G T COL27A1 Splice_Site p.X928_splice 0.41 TCGA-78-8640-01 9 117810734 117810734 C G TNC Missense_Mutation p.E1553Q 0.25 tolerated(0.12) probably_damaging(0.962) TCGA-78-8640-01 9 123776293 123776293 A C C5 Silent p.V705V 0.20 TCGA-78-8640-01 9 130242172 130242172 G C LRSAM1 Missense_Mutation p.E320Q 0.17 deleterious(0) possibly_damaging(0.806) TCGA-78-8640-01 9 130829465 130829465 C T NAIF1 5'UTR 0.16 TCGA-78-8640-01 9 132620769 132620769 G T USP20 Silent p.V74V 0.35 TCGA-78-8640-01 9 138415126 138415126 C G LCN1 Missense_Mutation p.D90E 0.13 tolerated(0.2) benign(0.079) TCGA-78-8640-01 9 139751466 139751466 T G MAMDC4 Missense_Mutation p.W649G 0.14 deleterious(0.01) possibly_damaging(0.623) TCGA-78-8640-01 9 139907980 139907980 A T ABCA2 Missense_Mutation p.Y1495N 0.30 deleterious(0) probably_damaging(0.997) TCGA-78-8640-01 9 23692776 23692776 C A ELAVL2 Missense_Mutation p.A287S 0.35 tolerated(0.21) benign(0.395) TCGA-78-8640-01 9 2810388 2810388 C A KIAA0020 Missense_Mutation p.W560L 0.23 tolerated(0.12) possibly_damaging(0.593) TCGA-78-8640-01 9 32544225 32544225 C T TOPORS Missense_Mutation p.D100N 0.29 deleterious(0.01) probably_damaging(0.912) TCGA-78-8640-01 9 40702813 40702813 C A SPATA31A3 Missense_Mutation p.P157H 0.18 deleterious(0) probably_damaging(0.979) TCGA-78-8640-01 9 43630635 43630635 G T SPATA31A6 Missense_Mutation p.P23T 0.49 tolerated(0.64) probably_damaging(0.991) TCGA-78-8640-01 9 4583043 4583043 C T SLC1A1 Missense_Mutation p.T400M 0.30 deleterious(0.01) possibly_damaging(0.527) TCGA-78-8640-01 9 84609969 84609969 C G SPATA31D1 Missense_Mutation p.N1528K 0.22 tolerated(0.47) benign(0.041) TCGA-78-8640-01 9 94060303 94060303 A G AUH Silent p.G187G 0.29 TCGA-78-8640-01 9 94172474 94172474 G T NFIL3 Missense_Mutation p.H181Q 0.35 deleterious(0.01) probably_damaging(0.993) TCGA-78-8640-01 X 111019952 111019952 G A TRPC5 Silent p.F837F 0.21 TCGA-78-8640-01 X 114537984 114537984 G A LUZP4 Splice_Site p.X114_splice 0.21 TCGA-78-8640-01 X 129060248 129060248 G - UTP14A Frame_Shift_Del p.R659Kfs*9 0.18 TCGA-78-8640-01 X 137785247 137785247 G A FGF13 Silent p.L111L 0.32 TCGA-78-8640-01 X 145082581 145082581 C A MIR891B RNA 0.39 TCGA-78-8640-01 X 152806852 152806852 A T ATP2B3 Missense_Mutation p.R82W 0.36 deleterious(0) possibly_damaging(0.897) TCGA-78-8640-01 X 153209828 153209828 G A RENBP Missense_Mutation p.R24C 0.25 deleterious(0.03) benign(0.019) TCGA-78-8640-01 X 153458999 153458999 G A OPN1MW Missense_Mutation p.G282E 0.21 tolerated(0.11) probably_damaging(0.996) TCGA-78-8640-01 X 154221352 154221352 T C F8 Missense_Mutation p.T154A 0.45 deleterious(0) probably_damaging(0.994) TCGA-78-8640-01 X 155239751 155239751 C A IL9R Missense_Mutation p.P415T 0.15 deleterious(0.02) possibly_damaging(0.804) TCGA-78-8640-01 X 16142296 16142296 G A GRPR Missense_Mutation p.V74I 0.31 tolerated(0.14) probably_damaging(0.999) TCGA-78-8640-01 X 21627366 21627366 C T CNKSR2 Missense_Mutation p.P775S 0.31 tolerated(0.13) probably_damaging(0.994) TCGA-78-8640-01 X 2406674 2406674 C T ZBED1 3'UTR 0.17 TCGA-78-8640-01 X 34961113 34961113 G T FAM47B Missense_Mutation p.M55I 0.47 deleterious(0.04) benign(0.071) TCGA-78-8640-01 X 36007682 36007682 G A CXorf22 3'UTR 0.48 TCGA-78-8640-01 X 37028252 37028252 G A FAM47C Missense_Mutation p.R590Q 0.47 tolerated(0.26) benign(0.417) TCGA-78-8640-01 X 40456778 40456778 G A ATP6AP2 Splice_Site p.X133_splice 0.20 TCGA-78-8640-01 X 46532014 46532014 C A SLC9A7 Missense_Mutation p.G218W 0.36 deleterious(0) probably_damaging(1) TCGA-78-8640-01 X 50654045 50654045 C A BMP15 Missense_Mutation p.R88S 0.22 deleterious(0.01) probably_damaging(0.955) TCGA-78-8640-01 X 56591882 56591882 G T UBQLN2 Missense_Mutation p.G526C 0.46 deleterious(0.04) unknown(0) TCGA-78-8640-01 X 5811206 5811206 G T NLGN4X Missense_Mutation p.D701E 0.39 tolerated(0.16) probably_damaging(0.97) TCGA-78-8640-01 X 63412445 63412445 G - AMER1 Frame_Shift_Del p.P241Qfs*41 0.29 TCGA-78-8640-01 X 69282900 69282900 A G OTUD6A Missense_Mutation p.S176G 0.31 tolerated(0.07) benign(0.001) TCGA-78-8640-01 X 70601699 70601699 T G TAF1 Silent p.A509A 0.25 TCGA-78-8640-01 X 70782994 70782994 C G OGT Missense_Mutation p.I721M 0.50 deleterious(0.01) possibly_damaging(0.618) TCGA-78-8640-01 X 78217036 78217036 A T P2RY10 Nonstop_Mutation p.*340Lext*2 0.52 TCGA-78-8640-01 X 79932441 79932441 C A BRWD3 Missense_Mutation p.R1692S 0.50 deleterious_low_confidence(0.05) unknown(0) TCGA-78-8640-01 X 91090345 91090345 C A PCDH11X 5'UTR 0.60 TCGA-78-8640-01 X 91873901 91873901 A T PCDH11X Nonsense_Mutation p.R1336* 0.53 TCGA-78-8640-01 Y 14851540 14851540 G T USP9Y Missense_Mutation p.D467Y 0.38 deleterious(0) probably_damaging(0.995) TCGA-78-8640-01 Y 22921762 22921762 T C RPS4Y2 Silent p.R30R 0.50 TCGA-78-8648-01 10 103988882 103988882 G A ELOVL3 Missense_Mutation p.C229Y 0.06 deleterious(0) probably_damaging(1) TCGA-78-8648-01 11 72410538 72410538 G A ARAP1 Missense_Mutation p.R788W 0.11 deleterious(0) probably_damaging(0.995) TCGA-78-8648-01 1 150445766 150445766 C T RPRD2 Missense_Mutation p.P1448S 0.05 deleterious_low_confidence(0) unknown(0) TCGA-78-8648-01 1 152284472 152284472 C T FLG Missense_Mutation p.G964R 0.04 probably_damaging(0.946) TCGA-78-8648-01 1 159284148 159284148 T G OR10J3 Missense_Mutation p.Q101P 0.05 deleterious(0.01) probably_damaging(0.939) TCGA-78-8648-01 1 160098487 160098487 C A ATP1A2 Missense_Mutation p.L355M 0.05 deleterious(0.03) probably_damaging(0.918) TCGA-78-8648-01 1 165175207 165175207 G T LMX1A Silent p.P294P 0.05 TCGA-78-8648-01 1 228470829 228470829 A G OBSCN Missense_Mutation p.K3290E 0.18 possibly_damaging(0.893) TCGA-78-8648-01 3 113775364 113775364 T A KIAA1407 5'UTR 0.11 TCGA-78-8648-01 3 183908909 183908909 A T ABCF3 Splice_Site p.X479_splice 0.04 TCGA-78-8648-01 3 33063137 33063137 A C GLB1 Missense_Mutation p.V385G 0.09 deleterious(0) probably_damaging(0.999) TCGA-78-8648-01 5 139918961 139918961 G C ANKHD1 Intron 0.03 TCGA-78-8648-01 8 3165842 3165842 G T CSMD1 Nonsense_Mutation p.S1272* 0.07 TCGA-78-8648-01 9 130487173 130487173 G A TTC16 Missense_Mutation p.R419H 0.33 tolerated(0.39) benign(0.009) TCGA-78-8648-01 9 79324593 79324593 C A PRUNE2 Missense_Mutation p.G866V 0.07 tolerated(0.1) benign(0.02) TCGA-78-8648-01 9 79324594 79324594 C A PRUNE2 Missense_Mutation p.G866C 0.07 deleterious(0.01) possibly_damaging(0.681) TCGA-78-8655-01 10 103917890 103917890 G A NOLC1 Missense_Mutation p.E176K 0.19 deleterious_low_confidence(0) benign(0.305) TCGA-78-8655-01 10 17373464 17373464 C A ST8SIA6 Missense_Mutation p.E155D 0.12 tolerated(0.15) benign(0.272) TCGA-78-8655-01 10 43692503 43692503 C T RASGEF1A Nonsense_Mutation p.W423* 0.47 TCGA-78-8655-01 10 50953438 50953438 G T OGDHL Nonsense_Mutation p.Y527* 0.27 TCGA-78-8655-01 11 113075207 113075207 C G NCAM1 Silent p.T168T 0.35 TCGA-78-8655-01 11 113078026 113078026 C T NCAM1 Silent p.T283T 0.24 TCGA-78-8655-01 11 119027354 119027354 G T ABCG4 Missense_Mutation p.L297F 0.28 deleterious(0.04) benign(0.186) TCGA-78-8655-01 11 123900871 123900871 C A OR10G8 Missense_Mutation p.P181Q 0.29 deleterious(0.02) probably_damaging(0.997) TCGA-78-8655-01 11 3249721 3249721 G A MRGPRE Silent p.R102R 0.18 TCGA-78-8655-01 11 4904054 4904054 C T OR51T1 Missense_Mutation p.L336F 0.46 tolerated(0.54) benign(0.05) TCGA-78-8655-01 11 55761685 55761685 G T OR5F1 Silent p.T139T 0.27 TCGA-78-8655-01 11 76869334 76869334 A G MYO7A Missense_Mutation p.I287M 0.10 tolerated(0.09) benign(0.311) TCGA-78-8655-01 12 110503776 110503776 G T C12orf76 5'UTR 0.60 TCGA-78-8655-01 12 25398285 25398285 C T KRAS Missense_Mutation p.G12S 0.69 deleterious(0.03) possibly_damaging(0.644) TCGA-78-8655-01 12 34179975 34179975 G T ALG10 3'UTR 0.69 TCGA-78-8655-01 12 7883472 7883474 AAG - CLEC4C In_Frame_Del p.S139del 0.60 TCGA-78-8655-01 12 80750658 80750658 C T OTOGL Nonsense_Mutation p.R1986* 0.71 TCGA-78-8655-01 13 28903861 28903861 C T FLT1 Silent p.G866G 0.24 TCGA-78-8655-01 13 46357745 46357745 G A SIAH3 Nonsense_Mutation p.Q195* 0.29 TCGA-78-8655-01 13 53419051 53419051 C A PCDH8 Missense_Mutation p.A953S 0.24 tolerated(0.76) benign(0.413) TCGA-78-8655-01 14 20483257 20483257 A C OR4K14 Missense_Mutation p.F32L 0.28 tolerated(0.32) benign(0) TCGA-78-8655-01 14 35871119 35871119 T C NFKBIA 3'UTR 0.35 TCGA-78-8655-01 14 53004326 53004326 T C TXNDC16 Missense_Mutation p.Y103C 0.28 deleterious(0) probably_damaging(0.99) TCGA-78-8655-01 14 78140463 78140463 C A ALKBH1 Missense_Mutation p.A288S 0.31 deleterious(0.01) probably_damaging(1) TCGA-78-8655-01 14 78234807 78234807 A G C14orf178 Silent p.P29P 0.26 TCGA-78-8655-01 15 20636427 20636427 G - HERC2P3 RNA 0.17 TCGA-78-8655-01 15 23890793 23890793 G T MAGEL2 Silent p.P96P 0.29 TCGA-78-8655-01 15 29347033 29347033 G T APBA2 Nonsense_Mutation p.E316* 0.35 TCGA-78-8655-01 15 83658804 83658804 T G FAM103A1 Silent p.P114P 0.19 TCGA-78-8655-01 16 20084943 20084943 G A GPR139 5'UTR 0.31 TCGA-78-8655-01 16 22274454 22274454 C T EEF2K Silent p.S441S 0.11 TCGA-78-8655-01 16 22926985 22926985 C - HS3ST2 3'UTR 0.23 TCGA-78-8655-01 16 28128750 28128750 G A XPO6 Silent p.Y631Y 0.31 TCGA-78-8655-01 16 33020705 33020705 G C IGHV3OR16-8 Missense_Mutation p.R38T 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.447) TCGA-78-8655-01 17 10212612 10212612 C T MYH13 Missense_Mutation p.R1703H 0.43 deleterious(0) probably_damaging(0.998) TCGA-78-8655-01 17 17880906 17880906 G T LRRC48 5'UTR 0.26 TCGA-78-8655-01 17 37786260 37786260 G A PPP1R1B Silent p.K67K 0.22 TCGA-78-8655-01 17 42337248 42337248 G A SLC4A1 Missense_Mutation p.R180C 0.18 deleterious(0.04) benign(0.011) TCGA-78-8655-01 17 48940655 48940655 G C TOB1 Missense_Mutation p.Q242E 0.17 tolerated(0.28) benign(0.001) TCGA-78-8655-01 17 4927219 4927219 C T KIF1C Missense_Mutation p.P1029S 0.31 tolerated_low_confidence(0.47) possibly_damaging(0.641) TCGA-78-8655-01 17 6364752 6364752 C A PITPNM3 Missense_Mutation p.G811W 0.25 deleterious(0) probably_damaging(1) TCGA-78-8655-01 17 74383481 74383481 C T SPHK1 Silent p.P409P 0.13 TCGA-78-8655-01 17 79827720 79827720 G A ARHGDIA Silent p.P29P 0.16 TCGA-78-8655-01 17 80350215 80350215 C T OGFOD3 3'UTR 0.25 TCGA-78-8655-01 17 9683301 9683301 G A DHRS7C Missense_Mutation p.P108S 0.26 tolerated(0.68) benign(0.016) TCGA-78-8655-01 18 44555151 44555151 C T TCEB3C Missense_Mutation p.V355M 0.02 deleterious(0.02) probably_damaging(0.998) TCGA-78-8655-01 19 1980175 1980175 G C CSNK1G2 Missense_Mutation p.K407N 0.19 tolerated_low_confidence(0.1) possibly_damaging(0.65) TCGA-78-8655-01 19 35646463 35646463 T G FXYD5 Missense_Mutation p.S4A 0.33 tolerated(0.17) benign(0) TCGA-78-8655-01 19 39025415 39025415 G T RYR1 Missense_Mutation p.R3772L 0.38 benign(0.001) TCGA-78-8655-01 19 40408793 40408793 G T FCGBP Missense_Mutation p.A1349D 0.28 probably_damaging(0.99) TCGA-78-8655-01 19 43358143 43358143 C T PSG10P RNA 0.34 TCGA-78-8655-01 19 52448502 52448502 T G ZNF613 Missense_Mutation p.F456V 0.30 deleterious(0) benign(0.206) TCGA-78-8655-01 19 57840273 57840273 C T ZNF543 Silent p.C481C 0.33 TCGA-78-8655-01 1 160261252 160261260 GGCTGCAGG TGCAGT COPA In_Frame_Del p.N1104_P1107delinsKLH 0.28 TCGA-78-8655-01 1 237753185 237753185 G T RYR2 Missense_Mutation p.G1231C 0.49 possibly_damaging(0.491) TCGA-78-8655-01 1 44595558 44595558 C A KLF17 Silent p.L205L 0.25 TCGA-78-8655-01 1 89479840 89479840 G A GBP3 Missense_Mutation p.S184F 0.45 tolerated(0.22) benign(0.043) TCGA-78-8655-01 20 3146165 3146165 C A LZTS3 Missense_Mutation p.R434L 0.06 deleterious(0) benign(0.176) TCGA-78-8655-01 21 11098901 11098901 C G BAGE2 RNA 0.23 TCGA-78-8655-01 21 15755505 15755505 C A HSPA13 5'UTR 0.42 TCGA-78-8655-01 21 19744529 19744529 G T TMPRSS15 Missense_Mutation p.D215E 0.23 deleterious(0) probably_damaging(1) TCGA-78-8655-01 21 44524456 44524456 G A U2AF1 Missense_Mutation p.S34F 0.21 deleterious(0) possibly_damaging(0.835) TCGA-78-8655-01 21 47581450 47581450 G C SPATC1L Missense_Mutation p.P289R 0.48 deleterious(0) probably_damaging(0.989) TCGA-78-8655-01 22 28193749 28193749 G A MN1 Missense_Mutation p.S928L 0.21 possibly_damaging(0.592) TCGA-78-8655-01 22 33700323 33700323 T A LARGE Missense_Mutation p.Y541F 0.31 deleterious(0.05) probably_damaging(0.998) TCGA-78-8655-01 22 44579219 44579219 G T PARVG Nonsense_Mutation p.E4* 0.24 TCGA-78-8655-01 2 133554221 133554221 G A NCKAP5 Nonsense_Mutation p.R297* 0.14 TCGA-78-8655-01 2 142888350 142888350 C T LRP1B 5'UTR 0.33 TCGA-78-8655-01 2 14774134 14774134 C A FAM84A Missense_Mutation p.L11I 0.33 deleterious(0.03) probably_damaging(0.952) TCGA-78-8655-01 2 223066777 223066777 T C PAX3 Missense_Mutation p.M436V 0.40 tolerated_low_confidence(0.19) benign(0.003) TCGA-78-8655-01 2 241459940 241459940 G A ANKMY1 Missense_Mutation p.R526C 0.40 deleterious(0.01) possibly_damaging(0.643) TCGA-78-8655-01 2 26507010 26507010 C G HADHB Missense_Mutation p.L363V 0.31 deleterious(0) probably_damaging(0.999) TCGA-78-8655-01 2 44104923 44104923 T C ABCG8 Silent p.S631S 0.28 TCGA-78-8655-01 2 50464030 50464030 C A NRXN1 Missense_Mutation p.R1188L 0.20 deleterious(0) possibly_damaging(0.457) TCGA-78-8655-01 2 90458390 90458390 C A CH17-132F21.1 Silent p.I22I 0.16 TCGA-78-8655-01 2 96949571 96949571 G A SNRNP200 Missense_Mutation p.P1522S 0.24 deleterious(0.02) possibly_damaging(0.703) TCGA-78-8655-01 2 99812235 99812235 C T MRPL30 3'UTR 0.25 TCGA-78-8655-01 2 9994470 9994470 A G TAF1B Missense_Mutation p.N107D 0.30 tolerated(0.11) benign(0.333) TCGA-78-8655-01 3 101083731 101083731 T A SENP7 Missense_Mutation p.T475S 0.24 tolerated(0.62) benign(0.15) TCGA-78-8655-01 3 112255231 112255231 G C ATG3 Intron 0.33 TCGA-78-8655-01 3 119434593 119434593 G T MAATS1 Intron 0.40 TCGA-78-8655-01 3 136574570 136574570 T C SLC35G2 3'UTR 0.20 TCGA-78-8655-01 3 184290477 184290477 C A EPHB3 Silent p.P123P 0.07 TCGA-78-8655-01 3 20219786 20219786 T A SGOL1 Missense_Mutation p.R131S 0.10 tolerated(0.12) benign(0.018) TCGA-78-8655-01 3 89498415 89498415 T C EPHA3 Missense_Mutation p.I796T 0.33 deleterious(0) probably_damaging(0.918) TCGA-78-8655-01 4 189013063 189013063 G A TRIML2 Missense_Mutation p.P210S 0.31 tolerated(0.05) possibly_damaging(0.822) TCGA-78-8655-01 4 30732498 30732498 G T PCDH7 Intron 0.37 TCGA-78-8655-01 4 55155280 55155280 A T PDGFRA Missense_Mutation p.K960M 0.47 deleterious(0) possibly_damaging(0.838) TCGA-78-8655-01 4 69817274 69817274 G T UGT2A3 Missense_Mutation p.P69T 0.36 tolerated(0.29) benign(0.015) TCGA-78-8655-01 4 74318272 74318272 A T AFP Missense_Mutation p.D528V 0.32 deleterious(0) benign(0.079) TCGA-78-8655-01 4 79793787 79793790 CTTT - BMP2K Frame_Shift_Del p.F545Nfs*5 0.33 TCGA-78-8655-01 4 91230184 91230184 A G CCSER1 Missense_Mutation p.D250G 0.31 deleterious(0) probably_damaging(0.999) TCGA-78-8655-01 5 138643801 138643801 G T MATR3 Missense_Mutation p.D233Y 0.31 deleterious(0.01) benign(0.305) TCGA-78-8655-01 5 140811101 140811101 A G PCDHGA12 Missense_Mutation p.T259A 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.88) TCGA-78-8655-01 5 151772020 151772020 T C NMUR2 Missense_Mutation p.Y327C 0.30 deleterious(0) probably_damaging(1) TCGA-78-8655-01 5 153857326 153857326 G C HAND1 Missense_Mutation p.S81R 0.35 tolerated(0.52) benign(0.05) TCGA-78-8655-01 5 153857327 153857327 C T HAND1 Missense_Mutation p.S81N 0.35 tolerated(0.47) benign(0.025) TCGA-78-8655-01 5 22143081 22143081 G T CDH12 Intron 0.50 TCGA-78-8655-01 5 24511455 24511456 CC A CDH10 Frame_Shift_Del p.G328Sfs*5 0.16 TCGA-78-8655-01 5 32126595 32126595 T A GOLPH3 Missense_Mutation p.N207I 0.25 tolerated(0.16) benign(0.406) TCGA-78-8655-01 5 33588730 33588730 C A ADAMTS12 Missense_Mutation p.D947Y 0.17 deleterious(0) probably_damaging(0.996) TCGA-78-8655-01 5 45262055 45262055 C T HCN1 Missense_Mutation p.A881T 0.10 tolerated_low_confidence(0.71) benign(0.001) TCGA-78-8655-01 5 71490841 71490841 T C MAP1B Silent p.P553P 0.34 TCGA-78-8655-01 5 82815960 82815960 C A VCAN Missense_Mutation p.P612H 0.30 deleterious(0.04) possibly_damaging(0.885) TCGA-78-8655-01 6 158924089 158924089 G T TULP4 Missense_Mutation p.V1132F 0.44 tolerated_low_confidence(0.35) benign(0.145) TCGA-78-8655-01 6 25529040 25529040 A T LRRC16A Silent p.L662L 0.17 TCGA-78-8655-01 6 25813326 25813326 C A SLC17A1 Missense_Mutation p.Q244H 0.27 tolerated(0.09) possibly_damaging(0.9) TCGA-78-8655-01 6 31503134 31503138 GGGTA CGTT DDX39B Intron 0.24 TCGA-78-8655-01 6 43019057 43019057 C T CUL7 Silent p.L378L 0.21 TCGA-78-8655-01 7 11418708 11418708 G T THSD7A Missense_Mutation p.P1597Q 0.18 deleterious(0) probably_damaging(0.998) TCGA-78-8655-01 7 129367175 129367175 G T NRF1 Nonsense_Mutation p.G440* 0.45 TCGA-78-8655-01 7 142180526 142180526 G T TRBV6-5 Silent p.A111A 0.23 TCGA-78-8655-01 7 142458527 142458527 C A PRSS1 Missense_Mutation p.N54K 0.36 deleterious(0.01) benign(0.338) TCGA-78-8655-01 7 50070760 50070760 G T ZPBP Missense_Mutation p.L212I 0.24 tolerated(0.82) benign(0.034) TCGA-78-8655-01 7 5036769 5036769 C T RNF216P1 RNA 0.16 TCGA-78-8655-01 7 93540133 93540133 A G GNGT1 Missense_Mutation p.Y43C 0.23 deleterious(0) probably_damaging(1) TCGA-78-8655-01 7 93540135 93540135 G T GNGT1 Missense_Mutation p.V44F 0.23 deleterious(0.01) possibly_damaging(0.527) TCGA-78-8655-01 7 98633231 98633231 C T SMURF1 Missense_Mutation p.V666M 0.42 deleterious(0.03) possibly_damaging(0.639) TCGA-78-8655-01 8 10466535 10466535 C A RP1L1 Missense_Mutation p.Q1691H 0.36 unknown(0) TCGA-78-8655-01 8 3038699 3038699 G T CSMD1 Missense_Mutation p.N1886K 0.33 probably_damaging(0.996) TCGA-78-8655-01 8 55537725 55537725 C A RP1 Missense_Mutation p.A428D 0.25 tolerated(0.16) benign(0.28) TCGA-78-8655-01 8 62596661 62596661 G C ASPH Missense_Mutation p.L64V 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-78-8655-01 9 123753470 123753470 T - C5 Frame_Shift_Del p.G981Dfs*4 0.25 TCGA-78-8655-01 9 95227214 95227214 G T ASPN Silent p.T233T 0.27 TCGA-78-8655-01 X 10096648 10096648 G A WWC3 Missense_Mutation p.E778K 0.09 deleterious(0.05) possibly_damaging(0.615) TCGA-78-8655-01 X 117883722 117883722 A G IL13RA1 Missense_Mutation p.N157D 0.18 tolerated(0.06) benign(0.074) TCGA-78-8655-01 X 119005283 119005283 C A RNF113A Silent p.V98V 0.15 TCGA-78-8655-01 X 119513369 119513369 C T ATP1B4 Silent p.D318D 0.15 TCGA-78-8655-01 X 129149223 129149223 C A BCORL1 Missense_Mutation p.S825R 0.19 possibly_damaging(0.798) TCGA-78-8655-01 X 130220551 130220551 G - ARHGAP36 Frame_Shift_Del p.E467Kfs*123 0.14 TCGA-78-8655-01 X 148055098 148055098 C A AFF2 Missense_Mutation p.S1122Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-78-8655-01 X 150840245 150840245 C G PASD1 Missense_Mutation p.F477L 0.11 tolerated(1) benign(0.006) TCGA-78-8655-01 X 152721782 152721782 C A HAUS7 Missense_Mutation p.A226S 0.19 tolerated(0.47) benign(0.311) TCGA-78-8655-01 X 18183130 18183130 C T BEND2 Silent p.%3D 0.16 TCGA-78-8655-01 X 23412125 23412125 A T PTCHD1 Silent p.I830I 0.25 TCGA-78-8655-01 X 34149195 34149195 G T FAM47A Missense_Mutation p.P401T 0.38 deleterious(0.01) benign(0.06) TCGA-78-8655-01 X 36162689 36162689 G T CHDC2 Missense_Mutation p.R424S 0.17 deleterious_low_confidence(0.01) benign(0.001) TCGA-78-8655-01 X 47272549 47272549 G T ZNF157 Missense_Mutation p.Q359H 0.28 tolerated(0.07) benign(0.007) TCGA-78-8655-01 X 49142720 49142720 G T PPP1R3F Missense_Mutation p.S523I 0.14 tolerated_low_confidence(0.09) possibly_damaging(0.489) TCGA-78-8655-01 X 70367876 70367876 T A NLGN3 Missense_Mutation p.W93R 0.23 deleterious(0) probably_damaging(1) TCGA-78-8655-01 X 91133401 91133401 G T PCDH11X Missense_Mutation p.R721I 0.32 tolerated(0.1) possibly_damaging(0.555) TCGA-78-8660-01 10 100481553 100481553 C A HPSE2 Missense_Mutation p.A273S 0.05 tolerated(0.44) benign(0.04) TCGA-78-8660-01 10 101980343 101980343 A T CHUK Splice_Site p.X158_splice 0.07 TCGA-78-8660-01 10 106074619 106074619 C T ITPRIP Silent p.K397K 0.11 TCGA-78-8660-01 10 106214273 106214273 C A CCDC147 Silent p.T868T 0.18 TCGA-78-8660-01 10 111860589 111860589 C G ADD3 Missense_Mutation p.Q60E 0.11 deleterious(0.02) possibly_damaging(0.805) TCGA-78-8660-01 10 124348721 124348721 C G DMBT1 Missense_Mutation p.P682R 0.21 tolerated(0.43) unknown(0) TCGA-78-8660-01 10 125426431 125426431 G T GPR26 Missense_Mutation p.A170S 0.20 tolerated(0.34) benign(0.069) TCGA-78-8660-01 10 17153050 17153050 C T CUBN Splice_Site p.X295_splice 0.10 TCGA-78-8660-01 10 22208795 22208795 C A DNAJC1 Missense_Mutation p.V201L 0.15 tolerated(0.31) benign(0.002) TCGA-78-8660-01 10 26310431 26310431 G A MYO3A Splice_Site p.X196_splice 0.07 TCGA-78-8660-01 10 27687653 27687653 T G PTCHD3 Missense_Mutation p.E625A 0.05 deleterious(0) possibly_damaging(0.891) TCGA-78-8660-01 10 49654610 49654610 C T ARHGAP22 Missense_Mutation p.E657K 0.08 deleterious(0) possibly_damaging(0.492) TCGA-78-8660-01 10 50959929 50959929 C A OGDHL Missense_Mutation p.M231I 0.16 tolerated(0.17) benign(0.017) TCGA-78-8660-01 11 1023950 1023950 A T MUC6 Missense_Mutation p.C1127S 0.12 unknown(0) TCGA-78-8660-01 11 108361748 108361748 C T KDELC2 Missense_Mutation p.E117K 0.21 tolerated(0.18) possibly_damaging(0.857) TCGA-78-8660-01 11 118352428 118352428 A T KMT2A Splice_Site p.X1212_splice 0.26 TCGA-78-8660-01 11 30435808 30435808 G A MPPED2 Missense_Mutation p.P245S 0.15 deleterious(0) probably_damaging(0.992) TCGA-78-8660-01 11 30915866 30915866 C - DCDC1 Frame_Shift_Del p.V1608Wfs*20 0.19 TCGA-78-8660-01 11 49168439 49168439 T G FOLH1 Missense_Mutation p.I708L 0.13 tolerated(0.48) probably_damaging(0.923) TCGA-78-8660-01 11 49168486 49168486 T C FOLH1 Missense_Mutation p.Y692C 0.15 deleterious(0) probably_damaging(0.973) TCGA-78-8660-01 11 5221328 5221328 G C OR51V1 Missense_Mutation p.I201M 0.08 deleterious(0.01) probably_damaging(0.943) TCGA-78-8660-01 11 5364344 5364344 A G OR51B5 Silent p.T137T 0.10 TCGA-78-8660-01 11 55322191 55322191 G T OR4C15 Missense_Mutation p.D137Y 0.10 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-78-8660-01 11 55595369 55595369 C A OR5L2 Silent p.I225I 0.10 TCGA-78-8660-01 11 55761748 55761748 C T OR5F1 Missense_Mutation p.M118I 0.16 deleterious(0) benign(0.443) TCGA-78-8660-01 11 55861041 55861041 A G OR8I2 Silent p.Q86Q 0.12 TCGA-78-8660-01 11 56086536 56086536 G A OR8K3 Missense_Mutation p.G252R 0.19 deleterious_low_confidence(0.01) probably_damaging(0.929) TCGA-78-8660-01 11 56086537 56086537 G A OR8K3 Missense_Mutation p.G252E 0.20 deleterious_low_confidence(0) probably_damaging(0.929) TCGA-78-8660-01 11 62554674 62554677 CGCG TGC TAF6L Frame_Shift_Del p.S592Lfs*9 0.24 TCGA-78-8660-01 11 63486245 63486245 G A RTN3 Missense_Mutation p.E91K 0.10 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-78-8660-01 11 65154544 65154544 C G FRMD8 Missense_Mutation p.P13A 0.19 tolerated(0.13) benign(0.001) TCGA-78-8660-01 11 65810614 65810614 G T GAL3ST3 Missense_Mutation p.D220E 0.09 tolerated(0.28) benign(0.073) TCGA-78-8660-01 11 7949931 7949931 A G OR10A6 Silent p.S93S 0.10 TCGA-78-8660-01 12 108642078 108642078 G C WSCD2 Silent p.G552G 0.19 TCGA-78-8660-01 12 117718542 117718542 C A NOS1 Silent p.V504V 0.08 TCGA-78-8660-01 12 117718552 117718552 G A NOS1 Missense_Mutation p.P501L 0.05 deleterious(0) probably_damaging(1) TCGA-78-8660-01 12 122845618 122845618 C T CLIP1 Missense_Mutation p.R298Q 0.23 deleterious(0.01) probably_damaging(0.954) TCGA-78-8660-01 12 22063152 22063152 T C ABCC9 Missense_Mutation p.E420G 0.17 deleterious(0.02) benign(0.011) TCGA-78-8660-01 12 26818980 26818980 C G ITPR2 Missense_Mutation p.V472L 0.07 tolerated(0.14) possibly_damaging(0.824) TCGA-78-8660-01 12 29608289 29608289 A T OVCH1 Missense_Mutation p.V777D 0.15 deleterious(0) possibly_damaging(0.779) TCGA-78-8660-01 12 32735176 32735176 G T FGD4 Silent p.T125T 0.17 TCGA-78-8660-01 12 50524465 50524465 C A CERS5 Missense_Mutation p.D348Y 0.19 tolerated(0.8) probably_damaging(0.947) TCGA-78-8660-01 12 53215675 53215675 G A KRT79 Missense_Mutation p.T530M 0.08 deleterious_low_confidence(0.04) possibly_damaging(0.791) TCGA-78-8660-01 12 81545787 81545787 G T ACSS3 Missense_Mutation p.W337L 0.17 deleterious(0.04) possibly_damaging(0.825) TCGA-78-8660-01 13 20233197 20233197 G C MPHOSPH8 Missense_Mutation p.D547H 0.16 deleterious(0) probably_damaging(0.999) TCGA-78-8660-01 13 23912745 23912745 G A SACS Missense_Mutation p.S1757F 0.07 benign(0.229) TCGA-78-8660-01 13 38160276 38160276 C G POSTN Missense_Mutation p.A299P 0.10 tolerated(0.09) probably_damaging(0.989) TCGA-78-8660-01 13 45563587 45563587 G A NUFIP1 5'UTR 0.14 TCGA-78-8660-01 13 46549546 46549546 C T ZC3H13 Silent p.R780R 0.08 TCGA-78-8660-01 13 46946429 46946429 T G KIAA0226L Missense_Mutation p.Q61P 0.12 tolerated(0.34) benign(0.006) TCGA-78-8660-01 13 70514222 70514222 C T KLHL1 Missense_Mutation p.D322N 0.17 deleterious(0) probably_damaging(0.999) TCGA-78-8660-01 13 92101093 92101093 C T GPC5 Missense_Mutation p.A81V 0.10 tolerated(0.37) benign(0.317) TCGA-78-8660-01 14 100376585 100376585 G T EML1 Nonsense_Mutation p.E435* 0.09 TCGA-78-8660-01 14 19553755 19553755 C T POTEG Silent p.G113G 0.16 TCGA-78-8660-01 14 47426811 47426811 G A MDGA2 Missense_Mutation p.R619W 0.14 deleterious(0) probably_damaging(0.932) TCGA-78-8660-01 14 50100906 50100906 G A DNAAF2 Missense_Mutation p.S321L 0.14 deleterious(0.03) possibly_damaging(0.68) TCGA-78-8660-01 14 58478842 58478842 C A C14orf37 Missense_Mutation p.D706Y 0.40 deleterious(0) benign(0.04) TCGA-78-8660-01 14 94929566 94929566 T A SERPINA9 Missense_Mutation p.K391M 0.18 deleterious(0.01) probably_damaging(1) TCGA-78-8660-01 15 101109584 101109584 T C LINS Silent p.R711R 0.15 TCGA-78-8660-01 15 20488857 20488857 G A CHEK2P2 RNA 0.06 TCGA-78-8660-01 15 25601841 25601841 G A UBE3A Silent p.H655H 0.14 TCGA-78-8660-01 15 50782020 50782020 G C USP8 Missense_Mutation p.R638T 0.11 deleterious(0) probably_damaging(0.942) TCGA-78-8660-01 15 50791225 50791225 A T USP8 Silent p.S1099S 0.13 TCGA-78-8660-01 15 66727455 66727455 G T MAP2K1 Missense_Mutation p.K57N 0.10 deleterious(0) probably_damaging(0.994) TCGA-78-8660-01 15 72698974 72698974 C A TMEM202 Silent p.L123L 0.16 TCGA-78-8660-01 15 89392725 89392725 T A ACAN Missense_Mutation p.F597I 0.15 deleterious(0) unknown(0) TCGA-78-8660-01 15 89421300 89421300 C T HAPLN3 Silent p.P328P 0.13 TCGA-78-8660-01 15 89836281 89836281 A G FANCI Missense_Mutation p.I760V 0.09 tolerated(0.2) benign(0.003) TCGA-78-8660-01 16 17211592 17211592 A T XYLT1 Missense_Mutation p.V823E 0.15 deleterious(0) possibly_damaging(0.904) TCGA-78-8660-01 16 2025241 2025241 C T TBL3 Missense_Mutation p.T230M 0.15 tolerated(0.23) benign(0.011) TCGA-78-8660-01 16 30537715 30537715 G T ZNF768 Missense_Mutation p.P7Q 0.17 deleterious_low_confidence(0) benign(0.002) TCGA-78-8660-01 16 31371041 31371041 G T ITGAX Missense_Mutation p.D151Y 0.15 deleterious(0) probably_damaging(1) TCGA-78-8660-01 16 55909083 55909083 C G CES5A Intron 0.15 TCGA-78-8660-01 16 75634051 75634051 G T ADAT1 3'UTR 0.18 TCGA-78-8660-01 16 77334176 77334176 G A ADAMTS18 Silent p.S886S 0.17 TCGA-78-8660-01 16 86612659 86612659 G T FOXL1 Silent p.V110V 0.17 TCGA-78-8660-01 16 88898457 88898457 C A GALNS Silent p.G317G 0.14 TCGA-78-8660-01 17 13399946 13399946 G T HS3ST3A1 Silent p.I263I 0.10 TCGA-78-8660-01 17 1634230 1634230 C G WDR81 Missense_Mutation p.I1319M 0.25 tolerated(0.21) probably_damaging(0.999) TCGA-78-8660-01 17 33486406 33486406 A G UNC45B Missense_Mutation p.D274G 0.06 deleterious(0.02) possibly_damaging(0.828) TCGA-78-8660-01 17 36936704 36936704 C G PIP4K2B Splice_Site p.X169_splice 0.20 TCGA-78-8660-01 17 40765707 40765707 C T TUBG1 Missense_Mutation p.R217C 0.18 deleterious(0.01) probably_damaging(0.979) TCGA-78-8660-01 17 41158969 41158969 C T IFI35 Missense_Mutation p.S2L 0.17 tolerated_low_confidence(0.09) benign(0.009) TCGA-78-8660-01 17 42964020 42964020 T A EFTUD2 Silent p.T68T 0.13 TCGA-78-8660-01 17 44116022 44116022 G T KANSL1 Nonsense_Mutation p.S808* 0.22 TCGA-78-8660-01 17 46196139 46196139 G T SNX11 Missense_Mutation p.G102C 0.14 deleterious(0) probably_damaging(1) TCGA-78-8660-01 17 51900660 51900660 C G KIF2B Missense_Mutation p.P89R 0.20 tolerated(0.06) benign(0.003) TCGA-78-8660-01 17 73261994 73261994 G A MRPS7 Missense_Mutation p.R240H 0.17 deleterious(0.03) benign(0.155) TCGA-78-8660-01 17 73265464 73265464 G A MIF4GD Missense_Mutation p.R57C 0.11 tolerated_low_confidence(0.08) benign(0.031) TCGA-78-8660-01 17 74733177 74733177 G C SRSF2 Silent p.T22T 0.15 TCGA-78-8660-01 17 7578489 7578489 A - TP53 Frame_Shift_Del p.D148Ifs*22 0.22 TCGA-78-8660-01 17 8053356 8053356 C A PER1 Silent p.R154R 0.31 TCGA-78-8660-01 18 22805706 22805706 G T ZNF521 Missense_Mutation p.L726I 0.16 deleterious(0) probably_damaging(0.994) TCGA-78-8660-01 18 34380205 34380205 T C TPGS2 Missense_Mutation p.N151S 0.18 tolerated(0.35) benign(0.004) TCGA-78-8660-01 18 9263815 9263815 C T ANKRD12 Missense_Mutation p.P1898S 0.13 deleterious(0.01) probably_damaging(0.95) TCGA-78-8660-01 19 11105607 11105607 A C SMARCA4 Missense_Mutation p.H508P 0.24 probably_damaging(0.917) TCGA-78-8660-01 19 12155312 12155312 C A ZNF878 Nonsense_Mutation p.E302* 0.09 TCGA-78-8660-01 19 12384427 12384427 G A ZNF44 Missense_Mutation p.H263Y 0.09 deleterious(0) probably_damaging(0.998) TCGA-78-8660-01 19 19031459 19031459 G A DDX49 Silent p.Q62Q 0.09 TCGA-78-8660-01 19 20308753 20308753 G T ZNF486 Missense_Mutation p.G412C 0.10 deleterious(0.01) probably_damaging(1) TCGA-78-8660-01 19 20308754 20308754 G T ZNF486 Missense_Mutation p.G412V 0.10 deleterious(0) probably_damaging(1) TCGA-78-8660-01 19 21990486 21990486 T A ZNF43 Missense_Mutation p.T785S 0.22 tolerated(0.13) possibly_damaging(0.679) TCGA-78-8660-01 19 22155345 22155345 T G ZNF208 Missense_Mutation p.K831Q 0.13 deleterious(0) unknown(0) TCGA-78-8660-01 19 22271883 22271883 C T ZNF257 Missense_Mutation p.S444L 0.16 deleterious(0.01) possibly_damaging(0.887) TCGA-78-8660-01 19 39798957 39798957 G A LRFN1 Silent p.I544I 0.19 TCGA-78-8660-01 19 43709697 43709697 C A PSG4 5'UTR 0.22 TCGA-78-8660-01 19 44008064 44008064 G A PHLDB3 Silent p.R69R 0.14 TCGA-78-8660-01 19 49938120 49938120 C A SLC17A7 Missense_Mutation p.V152L 0.19 tolerated(1) benign(0.002) TCGA-78-8660-01 19 50209521 50209521 G C CPT1C Missense_Mutation p.K398N 0.17 tolerated(0.21) possibly_damaging(0.745) TCGA-78-8660-01 19 51446941 51446941 C A KLK5 Silent p.T276T 0.15 TCGA-78-8660-01 19 54135379 54135379 C A DPRX Missense_Mutation p.L7I 0.17 tolerated(0.12) benign(0.346) TCGA-78-8660-01 19 55106320 55106320 C T LILRA1 Silent p.S87S 0.10 TCGA-78-8660-01 19 55176625 55176625 C T LILRB4 Missense_Mutation p.H251Y 0.20 deleterious(0.03) benign(0.029) TCGA-78-8660-01 19 55341844 55341844 C A KIR3DL1 3'UTR 0.18 TCGA-78-8660-01 19 56114233 56114233 A T ZNF524 Missense_Mutation p.E252V 0.24 tolerated_low_confidence(0.32) unknown(0) TCGA-78-8660-01 19 57722927 57722927 G A ZNF264 Missense_Mutation p.M154I 0.21 tolerated(0.19) benign(0.002) TCGA-78-8660-01 19 7986940 7986940 G T SNAPC2 Silent p.T131T 0.05 TCGA-78-8660-01 19 7986943 7986943 A T SNAPC2 Missense_Mutation p.E132D 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-78-8660-01 1 115223060 115223060 C A AMPD1 Missense_Mutation p.R229L 0.10 tolerated(0.29) benign(0.049) TCGA-78-8660-01 1 11561779 11561779 G A PTCHD2 Missense_Mutation p.A244T 0.19 tolerated(0.56) benign(0.006) TCGA-78-8660-01 1 152280043 152280043 C G FLG Missense_Mutation p.G2440A 0.15 probably_damaging(0.941) TCGA-78-8660-01 1 152538300 152538300 G T LCE3E 3'UTR 0.10 TCGA-78-8660-01 1 155290502 155290502 C T RUSC1 5'Flank 0.16 TCGA-78-8660-01 1 155290933 155290933 C T RUSC1 Intron 0.15 TCGA-78-8660-01 1 155291097 155291097 C G RUSC1 Intron 0.12 TCGA-78-8660-01 1 155291216 155291216 C G RUSC1 Intron 0.17 TCGA-78-8660-01 1 155292200 155292200 C G RUSC1 Silent p.L212L 0.13 TCGA-78-8660-01 1 156641073 156641073 C G NES Missense_Mutation p.M969I 0.15 deleterious(0.01) benign(0.124) TCGA-78-8660-01 1 157494103 157494103 G A FCRL5 Silent p.A735A 0.28 TCGA-78-8660-01 1 157667045 157667045 G T FCRL3 Silent p.P243P 0.11 TCGA-78-8660-01 1 158300744 158300744 C A CD1B Missense_Mutation p.G57V 0.08 tolerated(0.07) possibly_damaging(0.68) TCGA-78-8660-01 1 158549049 158549049 A G OR10X1 Missense_Mutation p.I214T 0.15 tolerated(0.06) benign(0.05) TCGA-78-8660-01 1 158576549 158576549 G T OR10Z1 Missense_Mutation p.W107C 0.17 deleterious(0) probably_damaging(0.998) TCGA-78-8660-01 1 159799980 159799980 A T SLAMF8 Missense_Mutation p.Y122F 0.14 deleterious(0) probably_damaging(0.96) TCGA-78-8660-01 1 159799981 159799981 C A SLAMF8 Nonsense_Mutation p.Y122* 0.16 TCGA-78-8660-01 1 169345899 169345899 A T BLZF1 Silent p.P50P 0.17 TCGA-78-8660-01 1 171173184 171173184 G A FMO2 Missense_Mutation p.G270S 0.17 deleterious(0.03) possibly_damaging(0.502) TCGA-78-8660-01 1 172437679 172437679 G T C1orf105 Missense_Mutation p.R166I 0.15 tolerated(0.19) possibly_damaging(0.506) TCGA-78-8660-01 1 181058331 181058331 C T IER5 Missense_Mutation p.T98I 0.29 tolerated(0.25) benign(0.01) TCGA-78-8660-01 1 201018184 201018184 T A CACNA1S Missense_Mutation p.I1429F 0.10 deleterious(0) probably_damaging(0.991) TCGA-78-8660-01 1 207651314 207651314 T C CR2 Missense_Mutation p.V996A 0.20 deleterious(0.02) probably_damaging(0.911) TCGA-78-8660-01 1 222696978 222696978 G A HHIPL2 Missense_Mutation p.R622W 0.14 tolerated(0.08) benign(0.003) TCGA-78-8660-01 1 236647355 236647355 C - EDARADD 3'Flank 0.16 TCGA-78-8660-01 1 237617787 237617787 C A RYR2 Missense_Mutation p.F463L 0.14 benign(0.001) TCGA-78-8660-01 1 237778116 237778116 G A RYR2 Missense_Mutation p.M1896I 0.13 benign(0.218) TCGA-78-8660-01 1 237791109 237791109 A T RYR2 Missense_Mutation p.T2057S 0.22 benign(0.145) TCGA-78-8660-01 1 237823287 237823287 G C RYR2 Missense_Mutation p.L2737F 0.12 benign(0.001) TCGA-78-8660-01 1 242383374 242383374 G C PLD5 Silent p.G217G 0.14 TCGA-78-8660-01 1 248005122 248005122 A T OR11L1 Missense_Mutation p.L26Q 0.07 deleterious(0.01) possibly_damaging(0.807) TCGA-78-8660-01 1 248637572 248637572 G A OR2T3 Silent p.R307R 0.05 TCGA-78-8660-01 1 248685485 248685485 G T OR2G6 Nonsense_Mutation p.E180* 0.12 TCGA-78-8660-01 1 27687469 27687469 C A MAP3K6 Silent p.T621T 0.32 TCGA-78-8660-01 1 32691889 32691889 G A EIF3I Missense_Mutation p.S123N 0.09 tolerated(0.33) benign(0.001) TCGA-78-8660-01 1 54606915 54606915 C A CDCP2 Missense_Mutation p.G207W 0.06 deleterious(0.01) probably_damaging(0.977) TCGA-78-8660-01 1 70504408 70504408 A G LRRC7 Silent p.T929T 0.18 TCGA-78-8660-01 1 75037637 75037637 C A C1orf173 Nonsense_Mutation p.G1253* 0.06 TCGA-78-8660-01 1 77094357 77094357 G A ST6GALNAC3 Missense_Mutation p.E262K 0.05 probably_damaging(0.999) TCGA-78-8660-01 1 89401929 89401929 C T CCBL2 Splice_Site p.X435_splice 0.12 TCGA-78-8660-01 20 1963686 1963686 G T PDYN Missense_Mutation p.F15L 0.12 tolerated(1) benign(0) TCGA-78-8660-01 20 2644634 2644634 C A IDH3B Silent p.G18G 0.23 TCGA-78-8660-01 20 34021900 34021900 C A GDF5 Missense_Mutation p.R438L 0.21 deleterious(0) possibly_damaging(0.676) TCGA-78-8660-01 20 54824152 54824152 A T MC3R Missense_Mutation p.M85L 0.22 tolerated(0.44) benign(0.028) TCGA-78-8660-01 20 55758794 55758794 C A BMP7 Silent p.R314R 0.21 TCGA-78-8660-01 20 55758795 55758795 C A BMP7 Missense_Mutation p.R314L 0.22 tolerated(0.06) benign(0.255) TCGA-78-8660-01 20 60714213 60714213 G A PSMA7 Missense_Mutation p.S130F 0.06 deleterious(0) probably_damaging(0.998) TCGA-78-8660-01 21 10951288 10951288 G T TPTE Missense_Mutation p.L142I 0.07 tolerated(0.05) possibly_damaging(0.516) TCGA-78-8660-01 21 40569301 40569301 G A BRWD1 Silent p.S1898S 0.16 TCGA-78-8660-01 22 29177022 29177022 A T CCDC117 Missense_Mutation p.E109V 0.23 tolerated(0.1) benign(0.035) TCGA-78-8660-01 22 32302421 32302421 G T DEPDC5 Missense_Mutation p.D1575Y 0.17 deleterious(0) probably_damaging(0.926) TCGA-78-8660-01 22 41548347 41548347 G T EP300 Missense_Mutation p.K1045N 0.20 benign(0.076) TCGA-78-8660-01 22 47063993 47063993 G T GRAMD4 Nonsense_Mutation p.E287* 0.14 TCGA-78-8660-01 2 100007032 100007032 C T EIF5B Missense_Mutation p.T871I 0.17 probably_damaging(0.998) TCGA-78-8660-01 2 11802137 11802137 T G NTSR2 Missense_Mutation p.D285A 0.14 tolerated(0.1) benign(0.025) TCGA-78-8660-01 2 124999851 124999851 A T CNTNAP5 Missense_Mutation p.I88F 0.20 deleterious(0) probably_damaging(0.922) TCGA-78-8660-01 2 128184707 128184707 G C PROC Missense_Mutation p.K235N 0.10 deleterious(0.02) benign(0.325) TCGA-78-8660-01 2 130832764 130832764 T G POTEF Missense_Mutation p.K761Q 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.723) TCGA-78-8660-01 2 130910996 130910996 T A SMPD4 Missense_Mutation p.T680S 0.18 tolerated(0.6) probably_damaging(0.953) TCGA-78-8660-01 2 145154031 145154031 G T ZEB2 Missense_Mutation p.D1005E 0.13 deleterious(0.02) possibly_damaging(0.824) TCGA-78-8660-01 2 155711354 155711354 C G KCNJ3 Missense_Mutation p.F345L 0.21 deleterious(0) probably_damaging(0.999) TCGA-78-8660-01 2 158177763 158177763 A G ERMN 3'UTR 0.07 TCGA-78-8660-01 2 158626933 158626933 A G ACVR1 Missense_Mutation p.F246S 0.08 deleterious(0.03) possibly_damaging(0.81) TCGA-78-8660-01 2 160189179 160189179 T A BAZ2B Nonsense_Mutation p.K1939* 0.17 TCGA-78-8660-01 2 168100848 168100848 C T XIRP2 Silent p.L982L 0.16 TCGA-78-8660-01 2 176958062 176958062 G A HOXD13 Silent p.Q148Q 0.11 TCGA-78-8660-01 2 178098960 178098960 C G NFE2L2 Missense_Mutation p.D29H 0.23 deleterious(0) probably_damaging(1) TCGA-78-8660-01 2 179437833 179437833 G T TTN Silent p.I24342I 0.17 TCGA-78-8660-01 2 179437914 179437914 G T TTN Nonsense_Mutation p.Y24315* 0.17 TCGA-78-8660-01 2 182543460 182543460 A C NEUROD1 Missense_Mutation p.L43R 0.18 tolerated(0.34) benign(0.089) TCGA-78-8660-01 2 219492797 219492820 TCTGCTCTAAGGATGGAGACATCT - PLCD4 In_Frame_Del p.C274_F281del 0.22 TCGA-78-8660-01 2 220136017 220136017 T C TUBA4B RNA 0.07 TCGA-78-8660-01 2 223488432 223488432 G A FARSB Silent p.L396L 0.13 TCGA-78-8660-01 2 228882070 228882070 G C SPHKAP Missense_Mutation p.A1167G 0.10 deleterious(0.01) probably_damaging(0.963) TCGA-78-8660-01 2 238285978 238285978 C T COL6A3 Missense_Mutation p.R836Q 0.14 benign(0.044) TCGA-78-8660-01 2 241569988 241569988 G T GPR35 Missense_Mutation p.G238W 0.17 deleterious(0.05) possibly_damaging(0.887) TCGA-78-8660-01 2 32727861 32727861 G T BIRC6 Splice_Site p.X3070_splice 0.10 TCGA-78-8660-01 2 55908017 55908017 C A PNPT1 Nonsense_Mutation p.E164* 0.19 TCGA-78-8660-01 2 5833000 5833000 C - SOX11 Frame_Shift_Del p.K50Sfs*4 0.11 TCGA-78-8660-01 2 69045100 69045100 T C ARHGAP25 Missense_Mutation p.V326A 0.22 deleterious(0) benign(0.138) TCGA-78-8660-01 2 72360228 72360228 A T CYP26B1 Missense_Mutation p.V357D 0.11 deleterious(0) probably_damaging(0.992) TCGA-78-8660-01 2 72360240 72360240 T A CYP26B1 Missense_Mutation p.Y353F 0.11 deleterious(0) probably_damaging(0.995) TCGA-78-8660-01 2 80136806 80136806 C G CTNNA2 Silent p.G313G 0.14 TCGA-78-8660-01 2 89619869 89619869 A C IGKV1-39 5'UTR 0.22 TCGA-78-8660-01 2 90260213 90260213 G T IGKV1D-8 Missense_Mutation p.A106S 0.12 deleterious(0) possibly_damaging(0.788) TCGA-78-8660-01 2 96853021 96853021 G A STARD7 Silent p.L288L 0.19 TCGA-78-8660-01 3 10401724 10401724 C T ATP2B2 Silent p.K581K 0.18 TCGA-78-8660-01 3 11858721 11858721 C T TAMM41 Missense_Mutation p.S218N 0.17 tolerated(0.86) benign(0.001) TCGA-78-8660-01 3 133670108 133670108 C A SLCO2A1 Missense_Mutation p.V269F 0.17 tolerated(0.14) benign(0.098) TCGA-78-8660-01 3 150403558 150403558 C T FAM194A Missense_Mutation p.E252K 0.18 deleterious(0) probably_damaging(0.981) TCGA-78-8660-01 3 164906572 164906572 G A SLITRK3 Nonsense_Mutation p.R683* 0.15 TCGA-78-8660-01 3 183211924 183211924 G T KLHL6 Silent p.G431G 0.13 TCGA-78-8660-01 3 183368814 183368814 G C KLHL24 Missense_Mutation p.G224R 0.09 tolerated(0.6) benign(0.008) TCGA-78-8660-01 3 185332451 185332451 A G SENP2 Missense_Mutation p.I345V 0.14 tolerated(0.83) benign(0.001) TCGA-78-8660-01 3 38805050 38805050 C T SCN10A Missense_Mutation p.G213S 0.05 tolerated(0.12) benign(0.088) TCGA-78-8660-01 3 39184438 39184438 T A CSRNP1 3'UTR 0.25 TCGA-78-8660-01 3 42569525 42569525 C T VIPR1 Silent p.F182F 0.06 TCGA-78-8660-01 3 42701182 42701182 C T ZBTB47 Silent p.F445F 0.11 TCGA-78-8660-01 3 97124033 97124033 C A EPHA6 Missense_Mutation p.S549Y 0.31 deleterious(0) probably_damaging(0.966) TCGA-78-8660-01 4 113568678 113568678 G T LARP7 Missense_Mutation p.A331S 0.17 tolerated(0.39) benign(0.016) TCGA-78-8660-01 4 128577791 128577791 G T INTU Missense_Mutation p.G228V 0.18 deleterious(0) probably_damaging(1) TCGA-78-8660-01 4 144449127 144449127 G T SMARCA5 Missense_Mutation p.R303I 0.11 deleterious(0.02) benign(0.179) TCGA-78-8660-01 4 155253844 155253845 - T DCHS2 Frame_Shift_Ins p.N673Kfs*13 0.10 TCGA-78-8660-01 4 17513653 17513653 C T QDPR Missense_Mutation p.E9K 0.10 deleterious_low_confidence(0.05) benign(0.194) TCGA-78-8660-01 4 17528587 17528587 C A CLRN2 Missense_Mutation p.A194D 0.11 tolerated(0.05) probably_damaging(0.999) TCGA-78-8660-01 4 22422670 22422670 T G GPR125 Missense_Mutation p.T550P 0.08 tolerated(0.13) benign(0.094) TCGA-78-8660-01 4 22749412 22749412 C G GBA3 Missense_Mutation p.I260M 0.10 tolerated(0.11) benign(0.417) TCGA-78-8660-01 4 23833204 23833204 G A PPARGC1A Silent p.P135P 0.07 TCGA-78-8660-01 4 30732507 30732507 C A PCDH7 Intron 0.12 TCGA-78-8660-01 4 43032586 43032586 T C GRXCR1 3'UTR 0.17 TCGA-78-8660-01 4 47408699 47408699 G A GABRB1 Missense_Mutation p.G279E 0.16 deleterious(0) probably_damaging(1) TCGA-78-8660-01 4 54319215 54319224 GACCGTGATC - FIP1L1 Frame_Shift_Del p.D472Gfs*147 0.16 TCGA-78-8660-01 4 69097070 69097070 G T TMPRSS11B Silent p.I179I 0.13 TCGA-78-8660-01 4 70352325 70352325 A T UGT2B4 Splice_Site p.X364_splice 0.15 TCGA-78-8660-01 4 79301123 79301123 G T FRAS1 Missense_Mutation p.R1179L 0.13 benign(0.014) TCGA-78-8660-01 4 91230013 91230013 A T CCSER1 Missense_Mutation p.K193M 0.18 deleterious(0) probably_damaging(0.999) TCGA-78-8660-01 5 109120443 109120443 A T MAN2A1 Splice_Site p.X526_splice 0.20 TCGA-78-8660-01 5 127730833 127730833 A T FBN2 Missense_Mutation p.C405S 0.10 deleterious(0.01) probably_damaging(0.987) TCGA-78-8660-01 5 133481817 133481822 GAATCA - TCF7 Intron 0.12 TCGA-78-8660-01 5 140531307 140531307 C A PCDHB6 Missense_Mutation p.P490Q 0.13 deleterious(0.01) possibly_damaging(0.606) TCGA-78-8660-01 5 140723779 140723779 C A PCDHGA3 Missense_Mutation p.A60E 0.13 tolerated_low_confidence(0.08) benign(0.16) TCGA-78-8660-01 5 153674471 153674471 G A GALNT10 Silent p.Q85Q 0.10 TCGA-78-8660-01 5 156590630 156590630 C T FAM71B Missense_Mutation p.G216R 0.16 tolerated(0.85) benign(0.006) TCGA-78-8660-01 5 15928217 15928217 C T FBXL7 Missense_Mutation p.R116W 0.22 tolerated(0.23) benign(0.001) TCGA-78-8660-01 5 176673678 176673678 G T NSD1 Splice_Site p.X1460_splice 0.10 TCGA-78-8660-01 5 176673679 176673679 G T NSD1 Missense_Mutation p.G1460V 0.11 deleterious(0) benign(0.424) TCGA-78-8660-01 5 19612601 19612601 A G CDH18 Silent p.S251S 0.23 TCGA-78-8660-01 5 33576961 33576961 G T ADAMTS12 Missense_Mutation p.S1057Y 0.28 deleterious(0.04) benign(0.316) TCGA-78-8660-01 5 37044578 37044578 T C NIPBL Missense_Mutation p.Y2080H 0.17 tolerated(0.64) benign(0.008) TCGA-78-8660-01 5 5319260 5319260 C A ADAMTS16 3'UTR 0.16 TCGA-78-8660-01 5 5463522 5463522 G T KIAA0947 Missense_Mutation p.G1359W 0.10 deleterious(0) possibly_damaging(0.753) TCGA-78-8660-01 5 6749706 6749706 G A PAPD7 Silent p.V291V 0.13 TCGA-78-8660-01 5 7695895 7695895 C A ADCY2 Silent p.T300T 0.19 TCGA-78-8660-01 5 7757671 7757671 T G ADCY2 Missense_Mutation p.I689S 0.11 tolerated(0.52) benign(0.003) TCGA-78-8660-01 5 79351729 79351729 C G THBS4 Silent p.A138A 0.10 TCGA-78-8660-01 6 119301421 119301421 C T FAM184A Missense_Mutation p.R728Q 0.11 deleterious(0.03) benign(0.126) TCGA-78-8660-01 6 144144852 144144852 G A PHACTR2 3'UTR 0.16 TCGA-78-8660-01 6 150719310 150719310 C A IYD 3'UTR 0.13 TCGA-78-8660-01 6 160113660 160113660 G C SOD2 Intron 0.17 TCGA-78-8660-01 6 170632319 170632319 C G FAM120B Silent p.V629V 0.20 TCGA-78-8660-01 6 24418414 24418414 T C MRS2 Silent p.L313L 0.15 TCGA-78-8660-01 6 25921578 25921578 C A SLC17A2 Silent p.G101G 0.08 TCGA-78-8660-01 6 26056464 26056465 - T HIST1H1C Frame_Shift_Ins p.A65Sfs*8 0.24 TCGA-78-8660-01 6 28253485 28253485 G C PGBD1 Splice_Site p.X185_splice 0.09 TCGA-78-8660-01 6 41533559 41533559 G T FOXP4 Missense_Mutation p.G21C 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.8) TCGA-78-8660-01 6 43128714 43128714 T C PTK7 3'UTR 0.57 TCGA-78-8660-01 6 49419309 49419309 C G MUT Missense_Mutation p.S401T 0.13 deleterious_low_confidence(0) probably_damaging(0.929) TCGA-78-8660-01 6 66205220 66205220 C G EYS Missense_Mutation p.L28F 0.08 tolerated_low_confidence(0.24) benign(0.007) TCGA-78-8660-01 7 123276869 123276869 C A ASB15 Missense_Mutation p.P534H 0.13 deleterious(0) probably_damaging(0.997) TCGA-78-8660-01 7 126173730 126173730 C A GRM8 Missense_Mutation p.C569F 0.07 deleterious(0) probably_damaging(0.997) TCGA-78-8660-01 7 140453126 140453137 TCGAGATTTCAC - BRAF In_Frame_Del p.V600_R603del 0.15 TCGA-78-8660-01 7 141618692 141618692 C A OR9A4 Missense_Mutation p.S6Y 0.13 deleterious(0) possibly_damaging(0.563) TCGA-78-8660-01 7 142574902 142574902 G A TRPV6 Silent p.I160I 0.12 TCGA-78-8660-01 7 149420975 149420975 C G KRBA1 Missense_Mutation p.S308C 0.11 deleterious(0.03) probably_damaging(0.987) TCGA-78-8660-01 7 151945031 151945031 T C KMT2C Missense_Mutation p.I830V 0.04 probably_damaging(0.992) TCGA-78-8660-01 7 154561129 154561129 G A DPP6 Missense_Mutation p.E296K 0.11 deleterious(0) probably_damaging(0.986) TCGA-78-8660-01 7 20738061 20738061 T C ABCB5 Missense_Mutation p.I681T 0.12 deleterious(0) possibly_damaging(0.462) TCGA-78-8660-01 7 73526309 73526309 A T LIMK1 Missense_Mutation p.H464L 0.18 tolerated(0.09) benign(0.395) TCGA-78-8660-01 7 73535281 73535281 C G LIMK1 Silent p.L561L 0.13 TCGA-78-8660-01 7 86541421 86541421 G C KIAA1324L Missense_Mutation p.F712L 0.17 tolerated(0.14) benign(0.072) TCGA-78-8660-01 7 88964661 88964661 G A ZNF804B Missense_Mutation p.E789K 0.18 tolerated(0.57) possibly_damaging(0.606) TCGA-78-8660-01 8 105361357 105361357 G T DCSTAMP Missense_Mutation p.V193F 0.14 deleterious(0) possibly_damaging(0.714) TCGA-78-8660-01 8 106815466 106815466 G A ZFPM2 Silent p.E1052E 0.06 TCGA-78-8660-01 8 118830720 118830720 C A EXT1 Missense_Mutation p.W529L 0.18 tolerated(0.09) possibly_damaging(0.819) TCGA-78-8660-01 8 132051843 132051843 C A ADCY8 Missense_Mutation p.G246V 0.29 deleterious(0) possibly_damaging(0.887) TCGA-78-8660-01 8 139793222 139793222 C A COL22A1 Missense_Mutation p.G533V 0.20 unknown(0) TCGA-78-8660-01 8 144776665 144776665 C T ZNF707 Missense_Mutation p.R361W 0.18 deleterious(0) probably_damaging(0.999) TCGA-78-8660-01 8 16974038 16974038 G T MICU3 Missense_Mutation p.D485Y 0.13 deleterious(0) probably_damaging(0.995) TCGA-78-8660-01 8 17823980 17823980 G C PCM1 Missense_Mutation p.Q1073H 0.23 deleterious(0.02) probably_damaging(0.975) TCGA-78-8660-01 8 22054229 22054229 C G BMP1 Missense_Mutation p.S601C 0.15 deleterious(0.02) probably_damaging(0.962) TCGA-78-8660-01 8 27288392 27288392 G T PTK2B Splice_Site p.X224_splice 0.15 TCGA-78-8660-01 8 27327486 27327486 G T CHRNA2 Missense_Mutation p.A29D 0.10 tolerated_low_confidence(0.31) benign(0.023) TCGA-78-8660-01 8 48769775 48769775 T C PRKDC Missense_Mutation p.Y2183C 0.19 probably_damaging(0.994) TCGA-78-8660-01 8 49832598 49832598 C T SNAI2 Missense_Mutation p.C161Y 0.12 deleterious(0) probably_damaging(1) TCGA-78-8660-01 8 54141959 54141959 T C OPRK1 Silent p.P347P 0.14 TCGA-78-8660-01 8 59409537 59409537 C G CYP7A1 Silent p.V178V 0.07 TCGA-78-8660-01 8 59750771 59750771 C A TOX Missense_Mutation p.V265L 0.14 deleterious(0) probably_damaging(0.97) TCGA-78-8660-01 8 6385119 6385119 A G ANGPT2 Silent p.L175L 0.19 TCGA-78-8660-01 8 73480201 73480201 G T KCNB2 Missense_Mutation p.D78Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-78-8660-01 8 97156917 97156917 G T GDF6 Silent p.S414S 0.11 TCGA-78-8660-01 9 114520998 114520998 G T C9orf84 Silent p.I127I 0.16 TCGA-78-8660-01 9 128064686 128064686 A G GAPVD1 Missense_Mutation p.I204V 0.22 tolerated(0.12) probably_damaging(0.976) TCGA-78-8660-01 9 134050989 134050989 G A NUP214 Silent p.Q1100Q 0.21 TCGA-78-8660-01 9 711405 711405 G C KANK1 Missense_Mutation p.Q213H 0.21 tolerated(0.24) benign(0.005) TCGA-78-8660-01 9 79634672 79634672 G T FOXB2 Silent p.L34L 0.15 TCGA-78-8660-01 9 8319961 8319961 C A PTPRD Missense_Mutation p.G1847V 0.18 deleterious(0) probably_damaging(1) TCGA-78-8660-01 X 105167173 105167173 G A NRK Missense_Mutation p.G893S 0.20 tolerated(0.12) probably_damaging(0.999) TCGA-78-8660-01 X 131219611 131219611 G A FRMD7 Missense_Mutation p.R215W 0.04 deleterious(0) probably_damaging(0.999) TCGA-78-8660-01 X 150840164 150840164 G T PASD1 Missense_Mutation p.K450N 0.06 tolerated(0.1) benign(0.039) TCGA-78-8660-01 X 151561959 151561959 C T GABRA3 Intron 0.30 TCGA-78-8660-01 X 2406934 2406934 C A ZBED1 Missense_Mutation p.W609C 0.11 deleterious(0) probably_damaging(0.998) TCGA-78-8660-01 X 48206462 48206462 T A SSX3 3'UTR 0.25 TCGA-78-8660-01 X 65480056 65480056 C A HEPH Missense_Mutation p.H1105N 0.21 deleterious(0) probably_damaging(1) TCGA-78-8660-01 X 68725551 68725551 G T FAM155B Silent p.G142G 0.14 TCGA-78-8660-01 X 73963137 73963137 C T KIAA2022 Missense_Mutation p.E419K 0.36 tolerated(0.88) benign(0.029) TCGA-78-8660-01 X 84560806 84560806 G T POF1B Nonsense_Mutation p.C476* 0.31 TCGA-78-8660-01 X 91873896 91873896 C G PCDH11X Missense_Mutation p.P1334R 0.29 deleterious_low_confidence(0) possibly_damaging(0.509) TCGA-78-8662-01 10 101841439 101841439 C A CPN1 5'UTR 0.54 TCGA-78-8662-01 10 101912068 101912068 C A ERLIN1 Missense_Mutation p.Q289H 0.55 deleterious(0.01) possibly_damaging(0.832) TCGA-78-8662-01 10 103296383 103296383 A T BTRC Missense_Mutation p.K517M 0.26 deleterious(0) probably_damaging(0.915) TCGA-78-8662-01 10 105184934 105184934 G T PDCD11 Missense_Mutation p.G986V 0.28 deleterious(0.01) benign(0.266) TCGA-78-8662-01 10 105953675 105953675 G T WDR96 Missense_Mutation p.P464H 0.29 deleterious(0) probably_damaging(0.994) TCGA-78-8662-01 10 106976693 106976693 G T SORCS3 Splice_Site p.X850_splice 0.34 TCGA-78-8662-01 10 108338911 108338911 G A SORCS1 Missense_Mutation p.P1157L 0.32 tolerated(0.24) benign(0.149) TCGA-78-8662-01 10 108357185 108357185 C A SORCS1 Silent p.T1063T 0.11 TCGA-78-8662-01 10 108432721 108432721 G T SORCS1 Missense_Mutation p.R655S 0.27 deleterious(0) possibly_damaging(0.79) TCGA-78-8662-01 10 108447974 108447974 C A SORCS1 Missense_Mutation p.R512S 0.15 tolerated(0.4) benign(0.036) TCGA-78-8662-01 10 112338435 112338435 A T SMC3 Missense_Mutation p.N134Y 0.29 deleterious(0) probably_damaging(0.996) TCGA-78-8662-01 10 115384639 115384639 G A NRAP Silent p.S765S 0.53 TCGA-78-8662-01 10 118138955 118138955 G T CCDC172 3'UTR 0.43 TCGA-78-8662-01 10 118354376 118354376 G A PNLIPRP1 Silent p.L155L 0.31 TCGA-78-8662-01 10 118425119 118425119 C A C10orf82 Nonsense_Mutation p.E92* 0.23 TCGA-78-8662-01 10 119100606 119100606 G A PDZD8 Missense_Mutation p.P294S 0.11 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 10 120934031 120934031 C A PRDX3 Missense_Mutation p.E81D 0.24 tolerated(0.27) benign(0.002) TCGA-78-8662-01 10 123846320 123846320 G T TACC2 Missense_Mutation p.R1435S 0.46 benign(0.003) TCGA-78-8662-01 10 123976335 123976335 C T TACC2 Missense_Mutation p.P2513L 0.26 probably_damaging(0.978) TCGA-78-8662-01 10 124271510 124271510 G T HTRA1 Silent p.R401R 0.15 TCGA-78-8662-01 10 127585197 127585197 G T FANK1 5'UTR 0.12 TCGA-78-8662-01 10 127753498 127753498 T A ADAM12 Missense_Mutation p.S499C 0.21 deleterious(0) probably_damaging(0.93) TCGA-78-8662-01 10 1279686 1279686 G T ADARB2 Missense_Mutation p.S488Y 0.50 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 10 134599454 134599454 G A NKX6-2 5'UTR 0.76 TCGA-78-8662-01 10 134664699 134664699 C A TTC40 Missense_Mutation p.Q1895H 0.33 tolerated(0.16) benign(0.371) TCGA-78-8662-01 10 135077242 135077242 C A ADAM8 Missense_Mutation p.V783L 0.50 tolerated(0.67) benign(0.001) TCGA-78-8662-01 10 15821010 15821010 C A FAM188A Missense_Mutation p.R440L 0.13 tolerated(0.6) benign(0.007) TCGA-78-8662-01 10 17271393 17271393 C A VIM 5'UTR 0.46 TCGA-78-8662-01 10 17746452 17746452 A T STAM Missense_Mutation p.Q312L 0.20 tolerated(0.08) benign(0.152) TCGA-78-8662-01 10 18270349 18270349 C G SLC39A12 Missense_Mutation p.L345V 0.20 deleterious(0) probably_damaging(0.927) TCGA-78-8662-01 10 18280101 18280101 G T SLC39A12 Nonsense_Mutation p.E431* 0.12 TCGA-78-8662-01 10 18280232 18280232 G T SLC39A12 Missense_Mutation p.K474N 0.16 deleterious(0.03) possibly_damaging(0.827) TCGA-78-8662-01 10 18840749 18840749 T C NSUN6 Intron 0.25 TCGA-78-8662-01 10 21074665 21074665 G A NEBL 3'UTR 0.20 TCGA-78-8662-01 10 21784717 21784717 G T CASC10 Missense_Mutation p.P75T 0.28 deleterious_low_confidence(0.02) probably_damaging(0.958) TCGA-78-8662-01 10 22618355 22618355 A T COMMD3-BMI1 Missense_Mutation p.I432F 0.49 tolerated_low_confidence(0.13) possibly_damaging(0.693) TCGA-78-8662-01 10 22828900 22828900 G A PIP4K2A Silent p.G380G 0.48 TCGA-78-8662-01 10 23235152 23235152 C A ARMC3 Missense_Mutation p.A43D 0.29 deleterious(0) probably_damaging(0.912) TCGA-78-8662-01 10 23235153 23235153 T A ARMC3 Silent p.A43A 0.30 TCGA-78-8662-01 10 24909211 24909211 C A ARHGAP21 Missense_Mutation p.R538L 0.42 tolerated(0.15) benign(0.203) TCGA-78-8662-01 10 25312585 25312585 C G THNSL1 Missense_Mutation p.L145V 0.21 tolerated(0.86) benign(0.078) TCGA-78-8662-01 10 28233214 28233214 C T ARMC4 Silent p.A560A 0.06 TCGA-78-8662-01 10 31133816 31133816 C A ZNF438 3'UTR 0.20 TCGA-78-8662-01 10 3190573 3190573 C T PITRM1 Intron 0.22 TCGA-78-8662-01 10 35500416 35500416 G T CREM Intron 0.11 TCGA-78-8662-01 10 37508317 37508317 C G ANKRD30A Missense_Mutation p.A1170G 0.18 deleterious(0.02) benign(0.049) TCGA-78-8662-01 10 395289 395289 C A DIP2C Missense_Mutation p.A1031S 0.20 deleterious(0) probably_damaging(0.996) TCGA-78-8662-01 10 43596057 43596057 C A RET Missense_Mutation p.T75K 0.27 tolerated_low_confidence(0.39) benign(0.018) TCGA-78-8662-01 10 43654344 43654344 A T CSGALNACT2 Missense_Mutation p.R281S 0.06 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 10 45602185 45602185 A T RSU1P2 RNA 0.30 TCGA-78-8662-01 10 48390082 48390082 G T RBP3 Missense_Mutation p.L266I 0.35 tolerated(0.53) probably_damaging(0.987) TCGA-78-8662-01 10 48390579 48390579 G A RBP3 Missense_Mutation p.P100L 0.44 tolerated(0.29) benign(0.019) TCGA-78-8662-01 10 48390609 48390609 G T RBP3 Missense_Mutation p.S90Y 0.45 deleterious(0) probably_damaging(0.995) TCGA-78-8662-01 10 48416412 48416412 G T GDF2 Missense_Mutation p.N94K 0.23 deleterious(0) probably_damaging(0.971) TCGA-78-8662-01 10 48426705 48426705 G C GDF10 Missense_Mutation p.I434M 0.19 deleterious(0) probably_damaging(0.984) TCGA-78-8662-01 10 49658815 49658815 T C ARHGAP22 Missense_Mutation p.I469V 0.17 tolerated(0.45) benign(0.001) TCGA-78-8662-01 10 49687739 49687739 G C ARHGAP22 Missense_Mutation p.R131G 0.35 deleterious(0.04) benign(0.019) TCGA-78-8662-01 10 49791063 49791063 G T ARHGAP22 Missense_Mutation p.R57S 0.20 deleterious(0) probably_damaging(1) TCGA-78-8662-01 10 50594740 50594740 C A DRGX Silent p.L138L 0.47 TCGA-78-8662-01 10 50819892 50819892 C A SLC18A3 Missense_Mutation p.A369D 0.29 tolerated(0.21) possibly_damaging(0.653) TCGA-78-8662-01 10 50902580 50902581 - T C10orf53 Intron 0.20 TCGA-78-8662-01 10 52005146 52005146 G T ASAH2 Missense_Mutation p.R66S 0.19 tolerated_low_confidence(0.74) benign(0) TCGA-78-8662-01 10 55755320 55755326 ACTTTTG CCTTTC PCDH15 Intron 0.39 TCGA-78-8662-01 10 64957234 64957234 G T JMJD1C Missense_Mutation p.Q1861K 0.24 tolerated(0.05) benign(0.099) TCGA-78-8662-01 10 69366740 69366740 C A CTNNA3 Missense_Mutation p.S56I 0.56 tolerated(0.13) benign(0.007) TCGA-78-8662-01 10 70551132 70551132 A T CCAR1 3'UTR 0.80 TCGA-78-8662-01 10 72326387 72326387 C T PALD1 Silent p.P823P 0.36 TCGA-78-8662-01 10 73473162 73473162 A G C10orf105 3'UTR 0.40 TCGA-78-8662-01 10 73515224 73515224 C A C10orf54 Splice_Site p.X190_splice 0.33 TCGA-78-8662-01 10 7604851 7604851 C A ITIH5 3'UTR 0.26 TCGA-78-8662-01 10 7679258 7679258 C T ITIH5 Silent p.A195A 0.22 TCGA-78-8662-01 10 78647150 78647150 C A KCNMA1 Silent p.S1178S 0.55 TCGA-78-8662-01 10 85991747 85991747 G C LRIT1 Missense_Mutation p.S603C 0.17 deleterious(0) probably_damaging(0.99) TCGA-78-8662-01 10 88476424 88476424 G T LDB3 Silent p.A529A 0.58 TCGA-78-8662-01 10 91177836 91177836 A - IFIT5 Frame_Shift_Del p.R294Gfs*4 0.20 TCGA-78-8662-01 10 91192719 91192719 G T SLC16A12 3'UTR 0.57 TCGA-78-8662-01 10 93751885 93751885 C T BTAF1 Missense_Mutation p.S955L 0.21 tolerated(0.4) benign(0.002) TCGA-78-8662-01 10 96112121 96112121 C G NOC3L Missense_Mutation p.G300R 0.26 deleterious(0.02) possibly_damaging(0.803) TCGA-78-8662-01 10 96291056 96291056 G T TBC1D12 Nonsense_Mutation p.G700* 0.61 TCGA-78-8662-01 10 98355249 98355249 A G PIK3AP1 3'UTR 0.38 TCGA-78-8662-01 10 98715390 98715390 A C LCOR Missense_Mutation p.Q338P 0.25 deleterious(0) possibly_damaging(0.507) TCGA-78-8662-01 10 98806781 98806781 C A SLIT1 Missense_Mutation p.G559V 0.24 deleterious(0) probably_damaging(1) TCGA-78-8662-01 10 98806782 98806782 C A SLIT1 Missense_Mutation p.G559W 0.25 deleterious(0) probably_damaging(1) TCGA-78-8662-01 11 102702831 102702831 A T MMP3 3'Flank 0.73 TCGA-78-8662-01 11 103018569 103018569 A G DYNC2H1 Missense_Mutation p.Q924R 0.90 benign(0.219) TCGA-78-8662-01 11 104912370 104912370 T A CARD16 Silent p.L117L 0.88 TCGA-78-8662-01 11 10650303 10650303 G T MRVI1 Missense_Mutation p.P216Q 0.44 tolerated(0.06) benign(0.23) TCGA-78-8662-01 11 106558166 106558166 C - GUCY1A2 3'UTR 0.25 TCGA-78-8662-01 11 108002667 108002667 A C ACAT1 Missense_Mutation p.K36Q 0.21 tolerated(0.7) benign(0) TCGA-78-8662-01 11 108032169 108032169 G A NPAT Missense_Mutation p.S1215L 0.90 deleterious(0.01) possibly_damaging(0.736) TCGA-78-8662-01 11 108535848 108535848 G C DDX10 5'UTR 0.16 TCGA-78-8662-01 11 111156474 111156474 C A C11orf53 Missense_Mutation p.L136I 0.86 deleterious(0.03) possibly_damaging(0.535) TCGA-78-8662-01 11 113133593 113133593 C A NCAM1 Intron 0.97 TCGA-78-8662-01 11 114168808 114168808 G T NNMT Missense_Mutation p.W97L 0.87 deleterious(0) probably_damaging(1) TCGA-78-8662-01 11 117308100 117308100 G C DSCAML1 Missense_Mutation p.H1546Q 0.19 tolerated(0.19) benign(0.133) TCGA-78-8662-01 11 118375889 118375889 C G KMT2A Silent p.L3094L 0.88 TCGA-78-8662-01 11 118885784 118885784 C A CCDC84 Missense_Mutation p.L266I 0.22 deleterious(0.04) benign(0.081) TCGA-78-8662-01 11 118968718 118968718 C A DPAGT1 Missense_Mutation p.C255F 0.42 deleterious(0) probably_damaging(1) TCGA-78-8662-01 11 118997796 118997796 G A HINFP Missense_Mutation p.G48R 0.24 tolerated(0.21) benign(0.003) TCGA-78-8662-01 11 120008296 120008296 G T TRIM29 Silent p.T148T 0.18 TCGA-78-8662-01 11 123810874 123810874 T A OR4D5 Missense_Mutation p.L184Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 11 123909088 123909088 C T OR10G7 Silent p.S207S 0.87 TCGA-78-8662-01 11 124440538 124440538 C A OR8A1 Missense_Mutation p.H192N 0.19 deleterious(0.03) possibly_damaging(0.864) TCGA-78-8662-01 11 124766982 124766982 G T ROBO4 Silent p.L82L 0.31 TCGA-78-8662-01 11 124805900 124805900 C A HEPACAM Translation_Start_Site p.M1? 0.83 deleterious_low_confidence(0) benign(0.23) TCGA-78-8662-01 11 125864825 125864825 C A CDON Nonsense_Mutation p.G829* 0.20 TCGA-78-8662-01 11 126163600 126163600 G A TIRAP 3'Flank 0.22 TCGA-78-8662-01 11 1265151 1265151 C T MUC5B Silent p.A2347A 0.20 TCGA-78-8662-01 11 128638058 128638058 G T FLI1 Silent p.V92V 0.22 TCGA-78-8662-01 11 128786460 128786460 A T KCNJ5 Missense_Mutation p.K365M 0.15 deleterious(0) probably_damaging(0.915) TCGA-78-8662-01 11 128840873 128840873 C A ARHGAP32 Missense_Mutation p.R1398L 0.81 deleterious_low_confidence(0.02) benign(0.343) TCGA-78-8662-01 11 128842292 128842292 G C ARHGAP32 Intron 0.17 TCGA-78-8662-01 11 130275912 130275912 C A ADAMTS8 Silent p.T737T 0.46 TCGA-78-8662-01 11 133789688 133789688 C A IGSF9B Missense_Mutation p.G1311V 0.75 deleterious_low_confidence(0.02) benign(0.083) TCGA-78-8662-01 11 134182780 134182780 G T GLB1L3 Missense_Mutation p.R500M 0.67 deleterious(0.02) benign(0.025) TCGA-78-8662-01 11 17498186 17498186 G A ABCC8 Silent p.I46I 0.41 TCGA-78-8662-01 11 18750479 18750479 A T PTPN5 3'UTR 0.82 TCGA-78-8662-01 11 1968581 1968581 C T MRPL23 5'UTR 1.00 TCGA-78-8662-01 11 20070504 20070504 C T NAV2 Missense_Mutation p.P1401L 0.32 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 11 21596522 21596522 G A NELL1 Missense_Mutation p.G796E 0.35 deleterious(0) probably_damaging(0.988) TCGA-78-8662-01 11 26619968 26619968 G A ANO3 Missense_Mutation p.D502N 0.39 deleterious(0.01) probably_damaging(1) TCGA-78-8662-01 11 30914483 30914483 C A DCDC1 Missense_Mutation p.R1652L 0.34 tolerated(0.69) benign(0.433) TCGA-78-8662-01 11 314316 314316 G A IFITM1 Nonsense_Mutation p.W49* 0.36 TCGA-78-8662-01 11 3688728 3688728 C A CHRNA10 Missense_Mutation p.R210L 0.60 tolerated(0.1) benign(0.258) TCGA-78-8662-01 11 380882 380882 G T B4GALNT4 Missense_Mutation p.R976L 0.21 deleterious(0) unknown(0) TCGA-78-8662-01 11 43345174 43345174 A T API5 Silent p.V246V 0.75 TCGA-78-8662-01 11 4608282 4608282 G C OR52I2 Missense_Mutation p.W80C 0.57 tolerated(0.19) benign(0.029) TCGA-78-8662-01 11 4615430 4615430 G C OR52I1 Missense_Mutation p.W54C 0.16 tolerated(0.19) benign(0.02) TCGA-78-8662-01 11 4673876 4673876 T A OR51E1 Silent p.I40I 0.67 TCGA-78-8662-01 11 5142511 5142511 C A OR52A4 RNA 0.42 TCGA-78-8662-01 11 5172787 5172787 G T OR52A1 Silent p.I271I 0.37 TCGA-78-8662-01 11 5173281 5173281 G A OR52A1 Missense_Mutation p.H107Y 0.41 deleterious(0) probably_damaging(1) TCGA-78-8662-01 11 5443982 5443982 G T OR51Q1 Missense_Mutation p.Q184H 0.78 deleterious(0) probably_damaging(0.981) TCGA-78-8662-01 11 55062908 55062908 C G TRIM51HP Intron 0.45 TCGA-78-8662-01 11 5530050 5530050 T G UBQLN3 Missense_Mutation p.I247L 0.78 tolerated(0.07) benign(0.009) TCGA-78-8662-01 11 5530523 5530523 A T UBQLN3 Missense_Mutation p.L89Q 0.35 deleterious(0) probably_damaging(1) TCGA-78-8662-01 11 55339945 55339945 C T OR4C16 Silent p.I114I 0.32 TCGA-78-8662-01 11 55563358 55563358 T A OR5D14 Silent p.A109A 0.81 TCGA-78-8662-01 11 55587542 55587542 T C OR5D18 Missense_Mutation p.V146A 0.78 deleterious(0.01) benign(0.35) TCGA-78-8662-01 11 55587915 55587915 C A OR5D18 Missense_Mutation p.H270Q 0.27 tolerated(0.29) benign(0.043) TCGA-78-8662-01 11 55703699 55703699 G T OR5I1 Missense_Mutation p.P60T 0.86 deleterious(0.01) probably_damaging(0.997) TCGA-78-8662-01 11 57799174 57799174 T A OR6Q1 Silent p.T250T 0.76 TCGA-78-8662-01 11 58207287 58207287 A T OR5B12 Missense_Mutation p.L113Q 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-78-8662-01 11 59190399 59190399 C A OR5A2 Missense_Mutation p.V10L 0.29 deleterious(0.03) benign(0.082) TCGA-78-8662-01 11 59211114 59211114 G T OR5A1 Missense_Mutation p.S158I 0.82 deleterious(0.04) probably_damaging(0.934) TCGA-78-8662-01 11 60156909 60156909 G C MS4A7 Missense_Mutation p.G129A 0.36 tolerated(1) benign(0.41) TCGA-78-8662-01 11 6048641 6048641 C A OR56A1 Silent p.S98S 0.76 TCGA-78-8662-01 11 61732207 61732207 C G FTH1 Missense_Mutation p.E182Q 0.55 tolerated(0.15) benign(0.049) TCGA-78-8662-01 11 62349014 62349014 C A TUT1 Missense_Mutation p.D183Y 0.47 deleterious(0.01) probably_damaging(0.91) TCGA-78-8662-01 11 62763623 62763623 A C SLC22A8 Missense_Mutation p.W255G 0.32 deleterious(0) probably_damaging(0.997) TCGA-78-8662-01 11 63069894 63069894 C T SLC22A10 Silent p.V388V 0.20 TCGA-78-8662-01 11 63276101 63276101 T C LGALS12 Missense_Mutation p.L71P 0.55 tolerated(0.27) benign(0.005) TCGA-78-8662-01 11 64031509 64031509 G T PLCB3 Silent p.L859L 0.22 TCGA-78-8662-01 11 64335178 64335178 G T SLC22A11 Missense_Mutation p.R389L 0.24 deleterious(0) possibly_damaging(0.657) TCGA-78-8662-01 11 64361127 64361127 C A SLC22A12 Silent p.R228R 0.19 TCGA-78-8662-01 11 64361128 64361128 G A SLC22A12 Missense_Mutation p.R228Q 0.18 tolerated(0.73) benign(0.003) TCGA-78-8662-01 11 64974041 64974041 C T CAPN1 Silent p.F487F 0.31 TCGA-78-8662-01 11 65303735 65303735 C T SCYL1 Silent p.F527F 0.26 TCGA-78-8662-01 11 66333815 66333815 G C CTSF Missense_Mutation p.A223G 0.81 tolerated(0.08) possibly_damaging(0.832) TCGA-78-8662-01 11 66411409 66411409 A T RBM14-RBM4 Missense_Mutation p.T276S 0.80 tolerated(1) unknown(0) TCGA-78-8662-01 11 67209532 67209532 T A CORO1B Missense_Mutation p.T77S 0.25 tolerated(0.4) probably_damaging(0.992) TCGA-78-8662-01 11 67413251 67413251 A T ACY3 Missense_Mutation p.L115Q 0.24 deleterious(0) probably_damaging(1) TCGA-78-8662-01 11 68540865 68540865 G A CPT1A Silent p.T536T 0.81 TCGA-78-8662-01 11 6942933 6942933 A G OR2D3 Missense_Mutation p.Y234C 0.81 deleterious(0) possibly_damaging(0.795) TCGA-78-8662-01 11 6977200 6977200 C T ZNF215 Missense_Mutation p.S331F 0.82 tolerated(0.71) benign(0.003) TCGA-78-8662-01 11 7111023 7111023 C A RBMXL2 Missense_Mutation p.D224E 0.75 tolerated(0.07) benign(0.001) TCGA-78-8662-01 11 74441865 74441865 G A CHRDL2 Silent p.S23S 0.27 TCGA-78-8662-01 11 74880318 74880318 C A SLCO2B1 Silent p.T183T 0.81 TCGA-78-8662-01 11 89768763 89768763 C A TRIM49C Silent p.P128P 0.48 TCGA-78-8662-01 12 101413824 101413824 C A ANO4 Missense_Mutation p.H214Q 0.73 tolerated(0.38) benign(0.113) TCGA-78-8662-01 12 10205330 10205330 C T CLEC9A Missense_Mutation p.P15L 0.80 deleterious(0.03) probably_damaging(0.935) TCGA-78-8662-01 12 10312547 10312547 A G OLR1 Missense_Mutation p.Y252H 0.81 deleterious(0) benign(0.039) TCGA-78-8662-01 12 109689957 109689957 A G ACACB Missense_Mutation p.N1966S 0.40 deleterious(0) probably_damaging(0.995) TCGA-78-8662-01 12 110034366 110034366 C G MVK Missense_Mutation p.A392G 0.76 tolerated_low_confidence(0.08) benign(0.004) TCGA-78-8662-01 12 111342464 111342464 C T CCDC63 Missense_Mutation p.A472V 0.74 tolerated(0.1) benign(0.394) TCGA-78-8662-01 12 111342479 111342479 C A CCDC63 Missense_Mutation p.P477Q 0.77 tolerated(0.06) benign(0.154) TCGA-78-8662-01 12 11139352 11139352 C G TAS2R50 Silent p.V36V 0.09 TCGA-78-8662-01 12 112237854 112237854 G T ALDH2 Missense_Mutation p.A465S 0.67 tolerated(0.11) probably_damaging(0.945) TCGA-78-8662-01 12 11508513 11508513 C A PRB1 5'UTR 0.33 TCGA-78-8662-01 12 117992973 117992973 C A KSR2 Splice_Site p.X506_splice 0.92 TCGA-78-8662-01 12 120884161 120884161 C T TRIAP1 Silent p.G5G 0.76 TCGA-78-8662-01 12 122380828 122380828 G T WDR66 Missense_Mutation p.A380S 0.71 tolerated(0.43) benign(0.109) TCGA-78-8662-01 12 122674805 122674805 C T LRRC43 Missense_Mutation p.P264L 0.78 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 12 122862496 122862496 C A CLIP1 Missense_Mutation p.V33L 0.80 tolerated(0.7) benign(0.003) TCGA-78-8662-01 12 124311319 124311319 C G DNAH10 Missense_Mutation p.A1304G 0.30 benign(0.001) TCGA-78-8662-01 12 129569176 129569176 G T TMEM132D Missense_Mutation p.N505K 0.26 deleterious(0.02) benign(0.06) TCGA-78-8662-01 12 130648252 130648252 C A FZD10 Silent p.R255R 0.24 TCGA-78-8662-01 12 14943496 14943496 C A WBP11 Missense_Mutation p.Q401H 0.82 tolerated_low_confidence(0.12) unknown(0) TCGA-78-8662-01 12 1988129 1988129 C A CACNA2D4 Missense_Mutation p.R546L 0.74 deleterious(0.03) benign(0.125) TCGA-78-8662-01 12 2027607 2027607 G C CACNA2D4 Silent p.L11L 0.78 TCGA-78-8662-01 12 21661419 21661419 G T GOLT1B Missense_Mutation p.G74C 0.68 deleterious(0) probably_damaging(1) TCGA-78-8662-01 12 22015965 22015965 T A ABCC9 Missense_Mutation p.Y754F 0.81 tolerated(0.1) probably_damaging(0.919) TCGA-78-8662-01 12 22602684 22602684 C A C2CD5 3'UTR 0.27 TCGA-78-8662-01 12 247639 247639 C T IQSEC3 Silent p.L370L 0.85 TCGA-78-8662-01 12 2775935 2775935 G T CACNA1C Missense_Mutation p.R1585L 0.22 deleterious(0) probably_damaging(0.985) TCGA-78-8662-01 12 3702301 3702301 G T PRMT8 Nonsense_Mutation p.G380* 0.32 TCGA-78-8662-01 12 39735403 39735403 C A KIF21A Missense_Mutation p.D609Y 0.77 deleterious(0) benign(0.299) TCGA-78-8662-01 12 4553369 4553369 A C FGF6 Missense_Mutation p.V127G 0.21 deleterious(0) probably_damaging(0.986) TCGA-78-8662-01 12 4872479 4872479 T C GALNT8 Missense_Mutation p.C474R 0.84 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 12 49578864 49578864 C G TUBA1A Missense_Mutation p.E429Q 0.39 deleterious_low_confidence(0.02) benign(0.142) TCGA-78-8662-01 12 50192155 50192155 C A NCKAP5L Missense_Mutation p.G148V 0.64 deleterious(0.01) probably_damaging(1) TCGA-78-8662-01 12 5020926 5020926 G T KCNA1 Nonsense_Mutation p.E128* 0.75 TCGA-78-8662-01 12 5021991 5021991 C A KCNA1 Missense_Mutation p.Q483K 0.81 tolerated_low_confidence(1) benign(0.098) TCGA-78-8662-01 12 52867405 52867405 G T KRT6C Silent p.S39S 0.80 TCGA-78-8662-01 12 53164945 53164945 T A KRT76 Missense_Mutation p.K441M 0.73 deleterious(0) probably_damaging(0.992) TCGA-78-8662-01 12 53164974 53164974 C A KRT76 Missense_Mutation p.E431D 0.41 tolerated(1) benign(0.233) TCGA-78-8662-01 12 53573754 53573754 G A CSAD 5'UTR 0.50 TCGA-78-8662-01 12 53722323 53722323 G A SP7 Silent p.C301C 0.84 TCGA-78-8662-01 12 53722324 53722324 C A SP7 Missense_Mutation p.C301F 0.84 deleterious(0) probably_damaging(0.913) TCGA-78-8662-01 12 55523945 55523945 C T OR9K2 Silent p.L131L 0.47 TCGA-78-8662-01 12 56721396 56721396 C T PAN2 Missense_Mutation p.R224H 0.35 deleterious(0.03) probably_damaging(0.931) TCGA-78-8662-01 12 58152054 58152054 T A MARCH9 Missense_Mutation p.M226K 0.80 deleterious(0.01) probably_damaging(0.936) TCGA-78-8662-01 12 60169166 60169166 G T SLC16A7 Missense_Mutation p.D364Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 12 62148677 62148677 G C FAM19A2 Missense_Mutation p.R79G 0.25 deleterious(0) probably_damaging(0.983) TCGA-78-8662-01 12 63195648 63195648 A T PPM1H Missense_Mutation p.I235N 0.31 deleterious(0) probably_damaging(0.977) TCGA-78-8662-01 12 64173797 64173797 C T TMEM5 Silent p.F19F 0.31 TCGA-78-8662-01 12 68716914 68716914 G A MDM1 Missense_Mutation p.P247L 0.78 tolerated(0.05) benign(0.041) TCGA-78-8662-01 12 71050594 71050594 T A PTPRR Silent p.A590A 0.74 TCGA-78-8662-01 12 72027179 72027179 T A ZFC3H1 Missense_Mutation p.L850F 0.56 deleterious(0) probably_damaging(0.996) TCGA-78-8662-01 12 75601177 75601177 G T KCNC2 Missense_Mutation p.A196E 0.75 tolerated(0.26) benign(0.145) TCGA-78-8662-01 12 7585997 7585997 C A CD163L1 Nonsense_Mutation p.G140* 0.81 TCGA-78-8662-01 12 7640185 7640185 A T CD163 Missense_Mutation p.L607H 0.78 deleterious(0) probably_damaging(0.996) TCGA-78-8662-01 12 78444803 78444803 C A NAV3 Missense_Mutation p.Q798K 0.67 tolerated(0.25) benign(0.017) TCGA-78-8662-01 12 81610746 81610746 A C ACSS3 Missense_Mutation p.Q474P 0.72 deleterious(0) possibly_damaging(0.894) TCGA-78-8662-01 12 88900136 88900136 G C KITLG Missense_Mutation p.T245R 0.71 tolerated(0.15) possibly_damaging(0.551) TCGA-78-8662-01 12 95663849 95663849 A G VEZT Missense_Mutation p.N245D 0.80 deleterious(0.04) probably_damaging(0.917) TCGA-78-8662-01 13 101881929 101881929 G T NALCN Silent p.R481R 0.35 TCGA-78-8662-01 13 102568883 102568883 C A FGF14 Intron 0.52 TCGA-78-8662-01 13 103710719 103710719 T C SLC10A2 Missense_Mutation p.T131A 0.77 tolerated(0.14) benign(0.122) TCGA-78-8662-01 13 20279942 20279942 G A PSPC1 Nonsense_Mutation p.Q416* 0.13 TCGA-78-8662-01 13 21955661 21955661 G C ZDHHC20 Missense_Mutation p.I323M 0.24 tolerated(0.21) benign(0.21) TCGA-78-8662-01 13 25744308 25744308 C A AMER2 Missense_Mutation p.D484Y 0.35 deleterious(0) probably_damaging(0.989) TCGA-78-8662-01 13 26620821 26620821 C A SHISA2 Missense_Mutation p.G240W 0.49 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 13 27256941 27256941 C A WASF3 Missense_Mutation p.A394D 0.23 tolerated(0.19) possibly_damaging(0.883) TCGA-78-8662-01 13 28014490 28014490 T A MTIF3 Silent p.T32T 0.53 TCGA-78-8662-01 13 29600580 29600580 A T MTUS2 Missense_Mutation p.N592I 0.31 deleterious(0) possibly_damaging(0.509) TCGA-78-8662-01 13 32335879 32335879 C T RXFP2 Missense_Mutation p.A87V 0.47 tolerated(0.24) benign(0.022) TCGA-78-8662-01 13 32912408 32912408 G T BRCA2 Missense_Mutation p.V1306F 0.23 deleterious(0) benign(0.26) TCGA-78-8662-01 13 37679464 37679464 C A CSNK1A1L 5'UTR 0.23 TCGA-78-8662-01 13 40325209 40325209 A T COG6 Missense_Mutation p.Q651H 0.24 deleterious(0) probably_damaging(0.995) TCGA-78-8662-01 13 46679175 46679175 C T CPB2 5'Flank 0.40 TCGA-78-8662-01 13 49771988 49771988 C G FNDC3A Missense_Mutation p.T823S 0.22 deleterious(0) benign(0.009) TCGA-78-8662-01 13 53422161 53422161 C A PCDH8 Missense_Mutation p.R137S 0.35 tolerated(0.27) benign(0.007) TCGA-78-8662-01 13 58207784 58207784 C A PCDH17 Silent p.G368G 0.22 TCGA-78-8662-01 13 66878855 66878855 G - PCDH9 Frame_Shift_Del p.L1216Wfs*4 0.23 TCGA-78-8662-01 13 67802567 67802567 G T PCDH9 Missense_Mutation p.D2E 0.40 tolerated(0.09) benign(0.405) TCGA-78-8662-01 13 70681675 70681675 G T KLHL1 Missense_Mutation p.Q53K 0.34 tolerated_low_confidence(0.1) benign(0.002) TCGA-78-8662-01 13 84454898 84454898 C T SLITRK1 Missense_Mutation p.G249S 0.51 deleterious(0) probably_damaging(0.968) TCGA-78-8662-01 13 84455204 84455204 G T SLITRK1 Missense_Mutation p.P147T 0.77 deleterious(0.04) benign(0.117) TCGA-78-8662-01 13 86369252 86369252 C A SLITRK6 Silent p.L464L 0.64 TCGA-78-8662-01 13 98829427 98829427 A T RNF113B Missense_Mutation p.F22I 0.21 deleterious(0.01) benign(0.365) TCGA-78-8662-01 14 100331978 100331978 C T EML1 Silent p.T126T 0.91 TCGA-78-8662-01 14 102027881 102027881 G A DIO3 Silent p.G16G 0.38 TCGA-78-8662-01 14 102493036 102493036 G A DYNC1H1 Silent p.R2921R 0.90 TCGA-78-8662-01 14 104571736 104571736 C A ASPG Silent p.G374G 0.62 TCGA-78-8662-01 14 106209214 106209214 G A IGHG1 Silent p.L65L 0.46 TCGA-78-8662-01 14 106478325 106478325 C A IGHV4-4 Missense_Mutation p.G45C 0.53 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-78-8662-01 14 106805430 106805430 C A IGHV4-31 Missense_Mutation p.G45C 0.68 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-78-8662-01 14 20019983 20019983 C T POTEM Missense_Mutation p.V80M 0.15 tolerated_low_confidence(0.06) probably_damaging(0.981) TCGA-78-8662-01 14 20296298 20296298 G T OR4N2 Nonsense_Mutation p.E231* 0.76 TCGA-78-8662-01 14 20528526 20528526 G T OR4L1 Missense_Mutation p.G108V 0.34 tolerated(0.07) probably_damaging(1) TCGA-78-8662-01 14 20612201 20612201 T C OR4N5 Missense_Mutation p.F103L 0.20 deleterious(0.04) benign(0.053) TCGA-78-8662-01 14 20847204 20847204 C T TEP1 Missense_Mutation p.D1730N 0.19 tolerated(0.9) benign(0.001) TCGA-78-8662-01 14 21360391 21360391 C A RNASE3 3'UTR 0.23 TCGA-78-8662-01 14 21831308 21831308 T A SUPT16H Missense_Mutation p.N466Y 0.27 deleterious(0.01) possibly_damaging(0.862) TCGA-78-8662-01 14 22616440 22616440 C T TRAV27 Missense_Mutation p.P61S 0.54 deleterious(0.01) possibly_damaging(0.903) TCGA-78-8662-01 14 23874013 23874013 C A MYH6 Silent p.G183G 0.25 TCGA-78-8662-01 14 24113332 24113332 C T DHRS2 Silent p.V167V 0.30 TCGA-78-8662-01 14 24728365 24728365 C A TGM1 Missense_Mutation p.V359L 0.36 deleterious(0.01) probably_damaging(0.986) TCGA-78-8662-01 14 27064616 27064616 C A NOVA1 Missense_Mutation p.G94C 0.18 deleterious(0.02) unknown(0) TCGA-78-8662-01 14 30046565 30046565 G T PRKD1 Missense_Mutation p.A873E 0.37 tolerated(0.15) benign(0.382) TCGA-78-8662-01 14 38061610 38061610 G A FOXA1 Silent p.L127L 0.32 TCGA-78-8662-01 14 38310857 38310857 G T TTC6 Nonsense_Mutation p.E1836* 0.17 TCGA-78-8662-01 14 44975457 44975457 T C FSCB Missense_Mutation p.E245G 0.42 tolerated(0.06) possibly_damaging(0.852) TCGA-78-8662-01 14 47120939 47120939 T C RPL10L Translation_Start_Site p.M1? 0.41 deleterious(0) benign(0.126) TCGA-78-8662-01 14 47311161 47311161 G T MDGA2 Silent p.L1017L 0.24 TCGA-78-8662-01 14 50671080 50671080 G A SOS2 Silent p.L45L 0.39 TCGA-78-8662-01 14 52496360 52496360 A T NID2 Missense_Mutation p.M769K 0.83 tolerated(0.88) benign(0.012) TCGA-78-8662-01 14 60212747 60212747 T C RTN1 Missense_Mutation p.K232E 0.35 tolerated(0.14) benign(0.01) TCGA-78-8662-01 14 61115897 61115897 A G SIX1 Missense_Mutation p.L4P 0.46 deleterious(0.05) benign(0.019) TCGA-78-8662-01 14 62016468 62016468 A T PRKCH Silent p.P657P 0.78 TCGA-78-8662-01 14 64066078 64066078 C A WDR89 Missense_Mutation p.V195L 0.76 deleterious(0) possibly_damaging(0.646) TCGA-78-8662-01 14 67525398 67525398 A G GPHN Missense_Mutation p.R347G 0.39 tolerated(0.17) benign(0.208) TCGA-78-8662-01 14 77797604 77797604 G T GSTZ1 3'UTR 0.73 TCGA-78-8662-01 14 95054308 95054308 C G SERPINA5 Missense_Mutation p.I203M 0.39 deleterious(0) probably_damaging(0.991) TCGA-78-8662-01 14 96922717 96922717 G C AK7 Missense_Mutation p.V378L 0.33 deleterious(0.01) possibly_damaging(0.706) TCGA-78-8662-01 14 96944851 96944851 G A AK7 Silent p.V535V 0.77 TCGA-78-8662-01 15 101595212 101595212 G T LRRK1 Silent p.S1372S 0.43 TCGA-78-8662-01 15 101933595 101933595 G A PCSK6 Missense_Mutation p.A343V 0.46 deleterious(0.01) probably_damaging(0.998) TCGA-78-8662-01 15 20170070 20170070 C A IGHV1OR15-9 Nonsense_Mutation p.G68* 0.26 TCGA-78-8662-01 15 20170071 20170071 C A IGHV1OR15-9 Missense_Mutation p.M67I 0.27 tolerated(1) benign(0.106) TCGA-78-8662-01 15 20876457 20876457 T A NBEAP1 RNA 0.10 TCGA-78-8662-01 15 20876572 20876572 G T NBEAP1 RNA 0.12 TCGA-78-8662-01 15 23445484 23445484 T A AC100757.1 3'Flank 0.19 TCGA-78-8662-01 15 23812500 23812500 G T MKRN3 3'UTR 0.50 TCGA-78-8662-01 15 24921761 24921761 C A NPAP1 Silent p.A249A 0.20 TCGA-78-8662-01 15 24922346 24922346 T A NPAP1 Silent p.L444L 0.32 TCGA-78-8662-01 15 25222115 25222115 T C SNRPN Missense_Mutation p.I120T 0.22 tolerated(0.09) benign(0.006) TCGA-78-8662-01 15 25334963 25334963 G T SNORD116-23 5'Flank 0.21 TCGA-78-8662-01 15 25477614 25477614 C A SNORD115-34 RNA 0.25 TCGA-78-8662-01 15 25488649 25488649 C T SNORD115-40 5'Flank 0.30 TCGA-78-8662-01 15 28424369 28424369 T C HERC2 Missense_Mutation p.I2980V 0.71 benign(0.109) TCGA-78-8662-01 15 33944944 33944944 G T RYR3 Missense_Mutation p.V1390F 0.76 benign(0.007) TCGA-78-8662-01 15 33954599 33954599 T C RYR3 Missense_Mutation p.L1623P 0.39 possibly_damaging(0.759) TCGA-78-8662-01 15 33955908 33955908 C G RYR3 Silent p.T1863T 0.45 TCGA-78-8662-01 15 34638223 34638223 G T NUTM1 Translation_Start_Site p.M1? 0.28 deleterious(0) probably_damaging(0.986) TCGA-78-8662-01 15 35086943 35086943 A T ACTC1 Missense_Mutation p.F23I 0.84 tolerated_low_confidence(0.05) probably_damaging(1) TCGA-78-8662-01 15 35086986 35086986 G A ACTC1 Silent p.T8T 0.38 TCGA-78-8662-01 15 41192007 41192007 A T VPS18 Missense_Mutation p.T331S 0.84 deleterious(0) probably_damaging(0.988) TCGA-78-8662-01 15 43815460 43815460 C T MAP1A Missense_Mutation p.P597S 0.77 benign(0.04) TCGA-78-8662-01 15 48056988 48056988 C A SEMA6D Silent p.V417V 0.91 TCGA-78-8662-01 15 48787397 48787397 T A FBN1 Missense_Mutation p.N867I 0.47 probably_damaging(1) TCGA-78-8662-01 15 49061270 49061270 T A CEP152 Silent p.T597T 0.61 TCGA-78-8662-01 15 52635343 52635343 C A MYO5A Silent p.L1337L 0.72 TCGA-78-8662-01 15 56993398 56993398 C A ZNF280D Nonsense_Mutation p.G72* 0.86 TCGA-78-8662-01 15 56999305 56999305 C A ZNF280D Translation_Start_Site p.M1? 0.84 deleterious_low_confidence(0.05) benign(0.035) TCGA-78-8662-01 15 62300854 62300854 C G VPS13C Missense_Mutation p.W373S 0.82 deleterious(0) possibly_damaging(0.77) TCGA-78-8662-01 15 63029237 63029237 G T TLN2 Missense_Mutation p.Q1173H 0.29 deleterious(0.04) benign(0.212) TCGA-78-8662-01 15 64410430 64410430 C A SNX1 Missense_Mutation p.P129Q 0.77 tolerated(0.22) benign(0.068) TCGA-78-8662-01 15 65114558 65114558 G C PIF1 Missense_Mutation p.L242V 0.16 tolerated(0.71) probably_damaging(0.999) TCGA-78-8662-01 15 72191154 72191154 T A MYO9A Silent p.S1230S 0.85 TCGA-78-8662-01 15 75949689 75949689 C T SNX33 3'UTR 0.36 TCGA-78-8662-01 15 75982602 75982602 C A CSPG4 Missense_Mutation p.Q268H 0.88 tolerated(0.18) benign(0.022) TCGA-78-8662-01 15 85341820 85341820 G A ZNF592 Missense_Mutation p.S913N 0.23 tolerated(0.26) benign(0.008) TCGA-78-8662-01 15 86801239 86801239 G A AGBL1 Missense_Mutation p.D270N 0.25 tolerated(0.08) benign(0.085) TCGA-78-8662-01 15 88420100 88420100 G A NTRK3 3'UTR 0.60 TCGA-78-8662-01 15 90809181 90809181 G T NGRN Intron 1.00 TCGA-78-8662-01 15 91769887 91769887 G T SV2B Missense_Mutation p.A132S 0.21 deleterious(0) benign(0.266) TCGA-78-8662-01 16 1250565 1250565 C - CACNA1H Frame_Shift_Del p.F372Sfs*3 0.33 TCGA-78-8662-01 16 15733148 15733148 C A KIAA0430 Intron 0.62 TCGA-78-8662-01 16 17202827 17202827 C A XYLT1 Nonsense_Mutation p.E869* 0.29 TCGA-78-8662-01 16 17202828 17202828 C G XYLT1 Missense_Mutation p.M868I 0.29 tolerated(0.07) benign(0.145) TCGA-78-8662-01 16 17228341 17228341 C T XYLT1 Silent p.E672E 0.13 TCGA-78-8662-01 16 19087043 19087043 G T COQ7 Missense_Mutation p.G123V 0.33 deleterious(0.04) probably_damaging(0.94) TCGA-78-8662-01 16 20322523 20322523 G T GP2 3'UTR 0.67 TCGA-78-8662-01 16 20422801 20422801 G A ACSM5 5'UTR 0.71 TCGA-78-8662-01 16 20448676 20448676 C A ACSM5 Missense_Mutation p.P508H 0.79 deleterious(0.01) probably_damaging(0.917) TCGA-78-8662-01 16 2106212 2106212 G C TSC2 Silent p.L205L 0.61 TCGA-78-8662-01 16 2121808 2121808 A G TSC2 Missense_Mutation p.K657R 1.00 tolerated(0.11) benign(0.38) TCGA-78-8662-01 16 22926955 22926955 T G HS3ST2 3'UTR 0.38 TCGA-78-8662-01 16 27078133 27078133 A T C16orf82 RNA 0.23 TCGA-78-8662-01 16 2905594 2905594 C A PRSS22 Missense_Mutation p.W180C 0.31 deleterious(0) probably_damaging(1) TCGA-78-8662-01 16 31384697 31384697 G T ITGAX Missense_Mutation p.V832L 0.32 deleterious(0.02) probably_damaging(0.992) TCGA-78-8662-01 16 47733336 47733336 G T PHKB 3'UTR 0.34 TCGA-78-8662-01 16 4815851 4815851 G A ZNF500 Silent p.D43D 0.29 TCGA-78-8662-01 16 49670706 49670706 C A ZNF423 Missense_Mutation p.C786F 0.85 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 16 633239 633239 G A PIGQ Missense_Mutation p.A630T 0.26 deleterious_low_confidence(0) benign(0) TCGA-78-8662-01 16 67228757 67228757 C G E2F4 Missense_Mutation p.L228V 0.41 tolerated(0.43) benign(0.04) TCGA-78-8662-01 16 68010019 68010019 G T DPEP3 Silent p.R428R 0.74 TCGA-78-8662-01 16 71318218 71318218 T A CMTR2 Nonsense_Mutation p.K536* 0.79 TCGA-78-8662-01 16 72188346 72188346 C A PMFBP1 Missense_Mutation p.A60S 0.36 tolerated(0.39) benign(0.039) TCGA-78-8662-01 16 76528962 76528962 T C CNTNAP4 Missense_Mutation p.W673R 0.78 deleterious(0.01) benign(0.216) TCGA-78-8662-01 16 7760795 7760795 C A RBFOX1 3'UTR 0.25 TCGA-78-8662-01 16 77896773 77896773 G T VAT1L Silent p.V236V 0.33 TCGA-78-8662-01 16 79245526 79245526 G T WWOX Missense_Mutation p.V360L 0.42 deleterious(0.01) benign(0.171) TCGA-78-8662-01 16 82131721 82131721 G T HSD17B2 Missense_Mutation p.D282Y 0.72 deleterious(0.01) benign(0.264) TCGA-78-8662-01 16 87436795 87436795 A T MAP1LC3B 3'UTR 0.36 TCGA-78-8662-01 17 10247425 10247425 G T MYH13 Missense_Mutation p.P529H 0.05 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 17 10303909 10303909 C G MYH8 Missense_Mutation p.R1178P 0.50 deleterious(0.01) probably_damaging(1) TCGA-78-8662-01 17 10363594 10363594 G T MYH4 Missense_Mutation p.L398M 0.41 tolerated(0.11) probably_damaging(1) TCGA-78-8662-01 17 10426979 10426979 G T MYH2 Missense_Mutation p.A1769D 0.60 deleterious(0) possibly_damaging(0.884) TCGA-78-8662-01 17 1386344 1386344 C A MYO1C Silent p.V119V 0.13 TCGA-78-8662-01 17 15508697 15508697 G C RP11-385D13.1 Missense_Mutation p.L735V 0.50 tolerated_low_confidence(0.05) probably_damaging(0.978) TCGA-78-8662-01 17 1640811 1640811 C T WDR81 Silent p.T1886T 0.24 TCGA-78-8662-01 17 16723376 16723376 C A AC022596.6 RNA 0.28 TCGA-78-8662-01 17 17250248 17250248 A G NT5M Missense_Mutation p.K225R 0.32 deleterious(0.02) probably_damaging(0.958) TCGA-78-8662-01 17 18111625 18111625 A G ALKBH5 Missense_Mutation p.Y367C 0.20 deleterious_low_confidence(0.02) probably_damaging(0.911) TCGA-78-8662-01 17 18251744 18251754 CGCCATAGTAT - SHMT1 Frame_Shift_Del p.Y82Dfs*2 0.32 TCGA-78-8662-01 17 1840825 1840825 C A RTN4RL1 Missense_Mutation p.E97D 0.49 tolerated(0.42) benign(0.008) TCGA-78-8662-01 17 21477524 21477524 C A AC138710.1 5'Flank 0.45 TCGA-78-8662-01 17 21731571 21731571 G T UBBP4 Nonsense_Mutation p.E216* 0.27 TCGA-78-8662-01 17 2202476 2202476 C - SMG6 Frame_Shift_Del p.G524Afs*41 0.27 TCGA-78-8662-01 17 25621449 25621449 G A WSB1 Missense_Mutation p.E10K 0.25 deleterious_low_confidence(0.05) benign(0.002) TCGA-78-8662-01 17 27309016 27309016 G A SEZ6 Missense_Mutation p.P33S 0.24 tolerated_low_confidence(0.17) benign(0.003) TCGA-78-8662-01 17 28645914 28645914 G T TMIGD1 Missense_Mutation p.P220T 0.21 deleterious(0) possibly_damaging(0.903) TCGA-78-8662-01 17 28651951 28651951 T A TMIGD1 Missense_Mutation p.S175C 0.27 deleterious(0) probably_damaging(0.976) TCGA-78-8662-01 17 2966062 2966062 C A OR1D5 Silent p.L280L 0.44 TCGA-78-8662-01 17 31348318 31348318 G T ASIC2 Missense_Mutation p.L454I 0.32 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 17 33510499 33510499 G T UNC45B Silent p.L811L 0.11 TCGA-78-8662-01 17 3379518 3379518 G C ASPA Missense_Mutation p.G22A 0.33 deleterious(0.01) probably_damaging(1) TCGA-78-8662-01 17 3447943 3447943 C T TRPV3 Missense_Mutation p.D81N 0.30 tolerated(0.15) benign(0.379) TCGA-78-8662-01 17 36359028 36359028 C A RP11-1407O15.2 Silent p.R221R 0.20 TCGA-78-8662-01 17 38319736 38319736 A T CASC3 Missense_Mutation p.Y263F 0.56 tolerated(1) benign(0) TCGA-78-8662-01 17 38925321 38925321 C T KRT26 Missense_Mutation p.E333K 0.19 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 17 39023107 39023107 C T KRT12 Missense_Mutation p.G111D 0.04 deleterious(0.02) unknown(0) TCGA-78-8662-01 17 39274127 39274127 G T KRTAP4-11 Silent p.P147P 0.55 TCGA-78-8662-01 17 39305862 39305862 G T KRTAP4-5 Missense_Mutation p.P53H 0.31 unknown(0) TCGA-78-8662-01 17 39334243 39334243 G T KRTAP4-2 Silent p.P58P 0.58 TCGA-78-8662-01 17 39550389 39550389 G T KRT31 Missense_Mutation p.A377E 0.56 tolerated(0.28) benign(0.411) TCGA-78-8662-01 17 40010906 40010906 T C KLHL11 Missense_Mutation p.T405A 0.22 tolerated(0.79) benign(0.241) TCGA-78-8662-01 17 40255736 40255736 T A DHX58 Silent p.P548P 0.21 TCGA-78-8662-01 17 42451839 42451839 C A ITGA2B Splice_Site p.X982_splice 0.21 TCGA-78-8662-01 17 45299161 45299161 G C MYL4 Missense_Mutation p.D143H 0.24 deleterious(0) probably_damaging(0.997) TCGA-78-8662-01 17 45820522 45820522 C A TBX21 Silent p.L244L 0.28 TCGA-78-8662-01 17 46023995 46023995 G T PNPO Silent p.L211L 0.26 TCGA-78-8662-01 17 48697078 48697078 T A CACNA1G Missense_Mutation p.I1939N 0.22 deleterious(0) benign(0.042) TCGA-78-8662-01 17 4889278 4889278 T C CAMTA2 Missense_Mutation p.E34G 0.37 deleterious_low_confidence(0) benign(0.082) TCGA-78-8662-01 17 48918303 48918303 C A WFIKKN2 Missense_Mutation p.R552S 0.39 deleterious(0) probably_damaging(1) TCGA-78-8662-01 17 49708861 49708861 G A CA10 3'UTR 0.60 TCGA-78-8662-01 17 5039177 5039177 C T USP6 Silent p.F206F 0.34 TCGA-78-8662-01 17 5086082 5086082 G A ZNF594 Silent p.C490C 0.59 TCGA-78-8662-01 17 53345167 53345167 G C HLF Silent p.P57P 0.19 TCGA-78-8662-01 17 53798145 53798145 C A TMEM100 Missense_Mutation p.G96V 0.28 deleterious(0) probably_damaging(1) TCGA-78-8662-01 17 56349077 56349077 C T MPO Missense_Mutation p.V657M 0.17 deleterious(0) probably_damaging(0.992) TCGA-78-8662-01 17 56693620 56693620 G A TEX14 Missense_Mutation p.P234L 0.15 tolerated(0.06) benign(0.253) TCGA-78-8662-01 17 57741253 57741253 A G CLTC Silent p.T473T 0.24 TCGA-78-8662-01 17 59485728 59485728 T A TBX2 Missense_Mutation p.V667E 0.33 tolerated(1) benign(0.038) TCGA-78-8662-01 17 60342557 60342557 G T TBC1D3P2 3'Flank 0.13 TCGA-78-8662-01 17 60753811 60753811 C A MRC2 Missense_Mutation p.Q585K 0.21 deleterious(0.03) possibly_damaging(0.593) TCGA-78-8662-01 17 62020207 62020207 C A SCN4A Missense_Mutation p.V1423F 0.54 deleterious(0) probably_damaging(1) TCGA-78-8662-01 17 62036744 62036744 G C SCN4A Missense_Mutation p.P634A 0.31 deleterious(0) probably_damaging(1) TCGA-78-8662-01 17 63221384 63221384 G A RGS9 Missense_Mutation p.E558K 0.28 tolerated_low_confidence(0.22) benign(0.079) TCGA-78-8662-01 17 65714106 65714106 C A NOL11 Missense_Mutation p.L15M 0.25 tolerated(0.06) possibly_damaging(0.851) TCGA-78-8662-01 17 67039705 67039705 G A ABCA9 Missense_Mutation p.S242L 0.20 deleterious(0) probably_damaging(0.989) TCGA-78-8662-01 17 67270214 67270214 G A ABCA5 Missense_Mutation p.H884Y 0.25 tolerated(1) benign(0.279) TCGA-78-8662-01 17 6927597 6927597 G A BCL6B Silent p.Q125Q 0.54 TCGA-78-8662-01 17 70645080 70645081 - T SLC39A11 Frame_Shift_Ins p.M271Nfs*18 0.28 TCGA-78-8662-01 17 71166224 71166224 C T SSTR2 Nonsense_Mutation p.R256* 0.28 TCGA-78-8662-01 17 72308174 72308174 C T DNAI2 Silent p.I509I 0.16 TCGA-78-8662-01 17 74477610 74477610 G A RHBDF2 5'UTR 0.68 TCGA-78-8662-01 17 7578437 7578437 G A TP53 Nonsense_Mutation p.Q165* 0.89 TCGA-78-8662-01 17 76130988 76130988 G T TMC8 Missense_Mutation p.G342V 0.53 tolerated(0.93) probably_damaging(0.928) TCGA-78-8662-01 17 7660478 7660478 G T DNAH2 Silent p.V658V 0.49 TCGA-78-8662-01 17 7660479 7660479 G T DNAH2 Missense_Mutation p.V659L 0.49 benign(0.013) TCGA-78-8662-01 17 7807859 7807859 G C CHD3 Missense_Mutation p.D1391H 0.55 probably_damaging(0.961) TCGA-78-8662-01 17 78333913 78333913 G A RNF213 Missense_Mutation p.E3703K 0.18 benign(0.016) TCGA-78-8662-01 17 78704506 78704506 G A RPTOR Silent p.E218E 0.09 TCGA-78-8662-01 17 79287381 79287381 G A TMEM105 3'UTR 0.25 TCGA-78-8662-01 17 79871984 79871984 C G SIRT7 Missense_Mutation p.K292N 0.28 deleterious(0.04) benign(0.274) TCGA-78-8662-01 17 79985276 79985276 G T LRRC45 Missense_Mutation p.M263I 0.13 deleterious(0.01) benign(0.22) TCGA-78-8662-01 17 80274703 80274703 A C CD7 Silent p.T79T 0.22 TCGA-78-8662-01 17 9674775 9674775 C T DHRS7C 3'UTR 0.37 TCGA-78-8662-01 18 13884888 13884888 G A MC2R Silent p.L210L 0.38 TCGA-78-8662-01 18 14183723 14183723 G T ANKRD20A5P RNA 0.33 TCGA-78-8662-01 18 14542977 14542977 G C POTEC Missense_Mutation p.L57V 0.14 tolerated_low_confidence(0.05) benign(0.003) TCGA-78-8662-01 18 14848862 14848862 C T ANKRD30B Missense_Mutation p.A991V 0.53 deleterious(0.05) benign(0.034) TCGA-78-8662-01 18 15323299 15323299 T C RNU6-721P 5'Flank 0.35 TCGA-78-8662-01 18 21017877 21017877 C A TMEM241 5'Flank 0.62 TCGA-78-8662-01 18 22023042 22023042 G T IMPACT Missense_Mutation p.D174Y 0.65 tolerated(1) benign(0.002) TCGA-78-8662-01 18 22807622 22807622 G A ZNF521 Missense_Mutation p.P87L 0.59 tolerated_low_confidence(0.38) probably_damaging(0.997) TCGA-78-8662-01 18 23861980 23861980 G T TAF4B Nonsense_Mutation p.E310* 0.60 TCGA-78-8662-01 18 25589742 25589742 G T CDH2 Missense_Mutation p.P214H 0.26 deleterious(0.02) probably_damaging(0.99) TCGA-78-8662-01 18 28906937 28906937 A T DSG1 Missense_Mutation p.E62V 0.32 deleterious(0) possibly_damaging(0.823) TCGA-78-8662-01 18 28934442 28934442 C A DSG1 Silent p.I761I 0.38 TCGA-78-8662-01 18 2928653 2928653 T C LPIN2 Missense_Mutation p.Y519C 0.58 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 18 30350008 30350008 C A KLHL14 Missense_Mutation p.V183L 0.33 tolerated(0.5) benign(0.011) TCGA-78-8662-01 18 31319983 31319983 C A ASXL3 Missense_Mutation p.T872K 0.27 benign(0.147) TCGA-78-8662-01 18 331777 331777 G T COLEC12 Missense_Mutation p.Q652K 0.47 tolerated(0.36) unknown(0) TCGA-78-8662-01 18 335089 335089 G A COLEC12 Missense_Mutation p.A490V 0.10 tolerated(0.38) unknown(0) TCGA-78-8662-01 18 40850201 40850201 A G SYT4 3'UTR 0.27 TCGA-78-8662-01 18 51686155 51686155 C T MBD2 Missense_Mutation p.E410K 0.41 deleterious_low_confidence(0) benign(0.101) TCGA-78-8662-01 18 5291201 5291201 C A ZBTB14 Nonsense_Mutation p.E336* 0.11 TCGA-78-8662-01 18 5415897 5415897 A C EPB41L3 Missense_Mutation p.C663G 0.11 deleterious(0) benign(0.184) TCGA-78-8662-01 18 55103329 55103329 G A ONECUT2 Silent p.L127L 0.44 TCGA-78-8662-01 18 59195219 59195219 A G CDH20 Missense_Mutation p.K346R 0.35 tolerated(0.17) benign(0.186) TCGA-78-8662-01 18 59925185 59925185 A G KIAA1468 Missense_Mutation p.E634G 0.23 deleterious(0) probably_damaging(0.956) TCGA-78-8662-01 18 61160414 61160414 C T SERPINB5 Intron 0.35 TCGA-78-8662-01 18 61306969 61306969 C G SERPINB4 Missense_Mutation p.D171H 0.38 tolerated(0.06) benign(0.008) TCGA-78-8662-01 18 61377465 61377465 T A SERPINB11 Missense_Mutation p.L13H 0.33 deleterious(0) probably_damaging(0.996) TCGA-78-8662-01 18 63530070 63530070 G T CDH7 Missense_Mutation p.C594F 0.47 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 18 66504142 66504142 G T CCDC102B Missense_Mutation p.G48W 0.37 deleterious(0) probably_damaging(0.998) TCGA-78-8662-01 18 67809568 67809568 A T RTTN Missense_Mutation p.V846D 0.28 tolerated(0.21) possibly_damaging(0.474) TCGA-78-8662-01 18 8825213 8825213 C T SOGA2 Silent p.L1235L 0.12 TCGA-78-8662-01 18 9887885 9887885 T A TXNDC2 Missense_Mutation p.L470Q 0.64 deleterious(0) probably_damaging(1) TCGA-78-8662-01 19 1008175 1008175 C A GRIN3B Missense_Mutation p.T784N 0.67 deleterious(0) probably_damaging(0.978) TCGA-78-8662-01 19 11657746 11657746 A G CNN1 Missense_Mutation p.T118A 0.28 tolerated(0.17) benign(0.382) TCGA-78-8662-01 19 12790715 12790715 C A DHPS Missense_Mutation p.A132S 0.40 deleterious(0) probably_damaging(0.994) TCGA-78-8662-01 19 12958215 12958215 G A MAST1 Missense_Mutation p.D147N 0.45 tolerated(0.16) probably_damaging(0.934) TCGA-78-8662-01 19 13033588 13033588 G A FARSA Missense_Mutation p.P501S 0.34 tolerated_low_confidence(0.15) benign(0) TCGA-78-8662-01 19 13915656 13915656 G T ZSWIM4 Nonsense_Mutation p.E136* 0.45 TCGA-78-8662-01 19 14522358 14522358 T C DDX39A Missense_Mutation p.K130R 0.76 tolerated(0.09) benign(0.061) TCGA-78-8662-01 19 14991696 14991696 A T OR7A17 Missense_Mutation p.S158T 0.77 deleterious_low_confidence(0.01) benign(0.014) TCGA-78-8662-01 19 16060464 16060464 T A OR10H4 Missense_Mutation p.I216N 0.32 deleterious(0) probably_damaging(0.917) TCGA-78-8662-01 19 18174742 18174742 C A IL12RB1 Missense_Mutation p.R521L 0.15 deleterious(0) probably_damaging(0.998) TCGA-78-8662-01 19 19344612 19344612 T C NCAN Missense_Mutation p.C1012R 0.75 deleterious(0) benign(0.005) TCGA-78-8662-01 19 2810718 2810718 G T THOP1 Nonsense_Mutation p.E575* 0.50 TCGA-78-8662-01 19 30935591 30935591 C T ZNF536 Silent p.C374C 0.06 TCGA-78-8662-01 19 31767460 31767460 T A TSHZ3 Missense_Mutation p.K1080M 0.77 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 19 31768887 31768887 C T TSHZ3 Silent p.K604K 0.78 TCGA-78-8662-01 19 36297412 36297412 A T PRODH2 Nonsense_Mutation p.Y383* 0.76 TCGA-78-8662-01 19 37488450 37488450 C A ZNF568 Nonsense_Mutation p.Y555* 1.00 TCGA-78-8662-01 19 3831717 3831717 G A ZFR2 Missense_Mutation p.A180V 0.38 tolerated(0.26) benign(0) TCGA-78-8662-01 19 3834935 3834935 T C ZFR2 Missense_Mutation p.T34A 0.69 tolerated(0.17) benign(0.001) TCGA-78-8662-01 19 38806359 38806359 G C YIF1B Intron 0.50 TCGA-78-8662-01 19 38873990 38873990 A T PSMD8 Missense_Mutation p.Q338L 0.72 deleterious(0.05) benign(0.042) TCGA-78-8662-01 19 39734683 39734683 T C IFNL3 Missense_Mutation p.T125A 0.32 deleterious(0.02) possibly_damaging(0.753) TCGA-78-8662-01 19 40541746 40541746 C A ZNF780B Missense_Mutation p.K340N 0.82 deleterious(0.01) probably_damaging(0.945) TCGA-78-8662-01 19 41895804 41895804 C T EXOSC5 Missense_Mutation p.A131T 0.19 deleterious(0.01) possibly_damaging(0.887) TCGA-78-8662-01 19 43415002 43415002 G T PSG6 Missense_Mutation p.P146T 0.80 tolerated(0.08) possibly_damaging(0.718) TCGA-78-8662-01 19 43579542 43579542 C G PSG2 Missense_Mutation p.A225P 0.83 deleterious(0) probably_damaging(0.909) TCGA-78-8662-01 19 43922349 43922349 G T TEX101 Missense_Mutation p.G202C 0.53 deleterious(0) probably_damaging(1) TCGA-78-8662-01 19 4446666 4446666 G T UBXN6 Missense_Mutation p.Q251K 0.63 tolerated(0.12) benign(0.034) TCGA-78-8662-01 19 44469165 44469165 C A ZNF221 Missense_Mutation p.P49T 0.85 tolerated(0.97) possibly_damaging(0.752) TCGA-78-8662-01 19 47424611 47424611 A - ARHGAP35 Frame_Shift_Del p.D894Mfs*7 0.49 TCGA-78-8662-01 19 49131846 49131846 G T SPHK2 Intron 0.44 TCGA-78-8662-01 19 49167532 49167532 T C NTN5 Missense_Mutation p.I280V 0.38 tolerated(1) benign(0.058) TCGA-78-8662-01 19 50099515 50099515 C T PRR12 Silent p.F641F 0.46 TCGA-78-8662-01 19 52376734 52376734 T C ZNF577 Missense_Mutation p.K170R 0.78 deleterious(0) possibly_damaging(0.86) TCGA-78-8662-01 19 53345113 53345113 T C ZNF468 Missense_Mutation p.H145R 0.74 tolerated(0.11) possibly_damaging(0.507) TCGA-78-8662-01 19 54501559 54501559 C A CACNG6 Missense_Mutation p.T133K 0.83 deleterious(0.02) probably_damaging(0.95) TCGA-78-8662-01 19 54756385 54756385 G T LILRB5 Missense_Mutation p.A501E 0.75 tolerated(0.12) benign(0.065) TCGA-78-8662-01 19 55112231 55112231 G T LILRA1 Silent p.V473V 0.83 TCGA-78-8662-01 19 55401263 55401263 C A FCAR 3'UTR 0.90 TCGA-78-8662-01 19 55496492 55496492 G A NLRP2 Missense_Mutation p.G703D 0.38 deleterious(0.02) benign(0.021) TCGA-78-8662-01 19 55672063 55672063 C A DNAAF3 Silent p.G399G 0.72 TCGA-78-8662-01 19 55708536 55708536 C A PTPRH Missense_Mutation p.A647S 0.65 probably_damaging(0.951) TCGA-78-8662-01 19 56103876 56103876 C A FIZ1 Missense_Mutation p.K477N 0.70 deleterious(0.01) probably_damaging(0.976) TCGA-78-8662-01 19 56423440 56423440 C A NLRP13 Missense_Mutation p.W581C 0.83 deleterious(0) probably_damaging(0.998) TCGA-78-8662-01 19 56539326 56539326 G T NLRP5 Missense_Mutation p.C576F 0.42 tolerated(0.69) benign(0.345) TCGA-78-8662-01 19 57133426 57133426 C T ZNF71 Silent p.L257L 0.44 TCGA-78-8662-01 19 57641898 57641898 C A USP29 Missense_Mutation p.Q619K 0.92 tolerated(0.3) benign(0.032) TCGA-78-8662-01 19 58868267 58868267 C A ZNF497 Silent p.P245P 0.90 TCGA-78-8662-01 19 6380976 6380976 G A GTF2F1 Silent p.P390P 0.27 TCGA-78-8662-01 19 7975582 7975582 C T MAP2K7 Missense_Mutation p.T190M 0.58 tolerated(0.08) benign(0.067) TCGA-78-8662-01 19 871946 871946 A G MED16 Missense_Mutation p.L693P 0.82 deleterious(0) probably_damaging(0.928) TCGA-78-8662-01 19 9066302 9066302 G T MUC16 Missense_Mutation p.D7048E 0.73 unknown(0) TCGA-78-8662-01 19 9085246 9085246 G T MUC16 Missense_Mutation p.S2190Y 0.66 unknown(0) TCGA-78-8662-01 19 9087116 9087116 C A MUC16 Missense_Mutation p.V1567L 0.79 unknown(0) TCGA-78-8662-01 19 9800897 9800897 C G ZNF812 Missense_Mutation p.V428L 0.36 tolerated(0.64) possibly_damaging(0.553) TCGA-78-8662-01 1 103364267 103364267 T C COL11A1 Silent p.A1401A 0.41 TCGA-78-8662-01 1 11253669 11253669 C A ANGPTL7 Silent p.G170G 0.76 TCGA-78-8662-01 1 115576671 115576671 G T TSHB Missense_Mutation p.R80S 0.30 deleterious(0.01) benign(0.217) TCGA-78-8662-01 1 120458825 120458825 C G NOTCH2 Missense_Mutation p.G2174R 0.83 deleterious(0.01) possibly_damaging(0.602) TCGA-78-8662-01 1 1235399 1235399 C T ACAP3 Missense_Mutation p.S206N 0.32 tolerated(0.16) benign(0.001) TCGA-78-8662-01 1 145440636 145440636 A G TXNIP Missense_Mutation p.Y279C 0.22 tolerated(0.16) benign(0.317) TCGA-78-8662-01 1 145537214 145537214 T C ITGA10 Silent p.C795C 0.48 TCGA-78-8662-01 1 145761321 145761321 C A PDZK1 Silent p.L378L 0.14 TCGA-78-8662-01 1 148932887 148932887 G T RP11-14N7.2 RNA 0.08 TCGA-78-8662-01 1 148932899 148932899 G T RP11-14N7.2 RNA 0.06 TCGA-78-8662-01 1 150053538 150053538 A G VPS45 Missense_Mutation p.N268D 0.44 deleterious(0.03) benign(0.038) TCGA-78-8662-01 1 150238809 150238809 T C APH1A Intron 0.11 TCGA-78-8662-01 1 151338900 151338900 C A SELENBP1 Missense_Mutation p.D232Y 0.31 deleterious(0) probably_damaging(0.992) TCGA-78-8662-01 1 152086473 152086473 T A TCHH Missense_Mutation p.L28F 0.55 unknown(0) TCGA-78-8662-01 1 152275150 152275150 G T FLG 3'UTR 0.32 TCGA-78-8662-01 1 152278662 152278662 A G FLG Silent p.H2900H 0.06 TCGA-78-8662-01 1 152282529 152282529 A T FLG Silent p.S1611S 0.33 TCGA-78-8662-01 1 152326677 152326677 A T FLG2 Missense_Mutation p.H1195Q 0.21 unknown(0) TCGA-78-8662-01 1 152648768 152648768 G C LCE2C Missense_Mutation p.E93Q 0.52 tolerated_low_confidence(0.05) unknown(0) TCGA-78-8662-01 1 152659554 152659554 C A LCE2B Missense_Mutation p.R79S 0.55 tolerated_low_confidence(0.89) unknown(0) TCGA-78-8662-01 1 152733779 152733779 G T KPRP Missense_Mutation p.G572V 0.37 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-78-8662-01 1 153752300 153752300 A C SLC27A3 Splice_Site p.X673_splice 0.49 TCGA-78-8662-01 1 154918600 154918600 C G PBXIP1 Missense_Mutation p.W517S 0.17 tolerated(0.06) benign(0.086) TCGA-78-8662-01 1 155015857 155015857 C G DCST1 Silent p.L348L 0.20 TCGA-78-8662-01 1 155217713 155217713 C A FAM189B Nonsense_Mutation p.E623* 0.44 TCGA-78-8662-01 1 155217714 155217714 T A FAM189B Silent p.R622R 0.46 TCGA-78-8662-01 1 155491369 155491369 A T ASH1L 5'UTR 0.45 TCGA-78-8662-01 1 156617790 156617790 C A BCAN Silent p.T219T 0.57 TCGA-78-8662-01 1 157665853 157665853 G T FCRL3 Missense_Mutation p.T370K 0.55 tolerated(1) benign(0.005) TCGA-78-8662-01 1 157738210 157738210 C T FCRL2 Missense_Mutation p.V293M 0.54 deleterious(0) probably_damaging(0.998) TCGA-78-8662-01 1 157738392 157738392 G A FCRL2 Missense_Mutation p.T232I 0.52 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 1 157771875 157771875 A T FCRL1 Missense_Mutation p.L239Q 0.46 tolerated(0.06) possibly_damaging(0.734) TCGA-78-8662-01 1 157772181 157772181 C A FCRL1 Missense_Mutation p.S198I 0.15 tolerated(0.05) possibly_damaging(0.806) TCGA-78-8662-01 1 15789878 15789878 C A CELA2A Intron 0.43 TCGA-78-8662-01 1 158059259 158059259 G T KIRREL Intron 0.72 TCGA-78-8662-01 1 158225024 158225024 G T CD1A Missense_Mutation p.W70L 0.62 deleterious(0.01) probably_damaging(0.999) TCGA-78-8662-01 1 158225042 158225042 G T CD1A Missense_Mutation p.S76I 0.61 deleterious(0) probably_damaging(0.988) TCGA-78-8662-01 1 158261117 158261117 G T CD1C Missense_Mutation p.E85D 0.31 deleterious(0.05) benign(0.01) TCGA-78-8662-01 1 158262578 158262578 T A CD1C Missense_Mutation p.L268Q 0.25 deleterious(0) probably_damaging(0.995) TCGA-78-8662-01 1 158299392 158299392 G T CD1B Silent p.G218G 0.44 TCGA-78-8662-01 1 158325307 158325307 T A CD1E Silent p.P191P 0.79 TCGA-78-8662-01 1 158622406 158622406 G T SPTA1 Missense_Mutation p.R1076S 0.11 tolerated(0.28) possibly_damaging(0.762) TCGA-78-8662-01 1 158637764 158637764 T A SPTA1 Missense_Mutation p.Q641L 0.13 tolerated(0.17) benign(0.207) TCGA-78-8662-01 1 158639569 158639569 T C SPTA1 Missense_Mutation p.D536G 0.12 deleterious(0.01) probably_damaging(0.926) TCGA-78-8662-01 1 158648266 158648266 C T SPTA1 Nonsense_Mutation p.W246* 0.12 TCGA-78-8662-01 1 158654919 158654919 A G SPTA1 Silent p.Y81Y 0.27 TCGA-78-8662-01 1 158747164 158747164 C A OR6N2 Nonsense_Mutation p.E88* 0.50 TCGA-78-8662-01 1 158747165 158747165 A C OR6N2 Missense_Mutation p.S87R 0.49 deleterious(0.02) benign(0.049) TCGA-78-8662-01 1 158817623 158817623 G C MNDA Missense_Mutation p.D365H 0.15 deleterious(0) probably_damaging(0.994) TCGA-78-8662-01 1 158912012 158912012 C T PYHIN1 Silent p.S275S 0.43 TCGA-78-8662-01 1 159170724 159170724 C A CADM3 3'UTR 0.34 TCGA-78-8662-01 1 159284030 159284030 C A OR10J3 Missense_Mutation p.R140S 0.27 tolerated(0.19) benign(0.05) TCGA-78-8662-01 1 159410329 159410329 C G OR10J1 Missense_Mutation p.H261D 0.11 deleterious(0) probably_damaging(1) TCGA-78-8662-01 1 159803081 159803081 C G SLAMF8 Missense_Mutation p.L235V 0.30 deleterious(0.03) benign(0.098) TCGA-78-8662-01 1 159901666 159901666 C A IGSF9 Missense_Mutation p.G433V 0.68 deleterious(0) probably_damaging(1) TCGA-78-8662-01 1 160210060 160210060 C A DCAF8 Missense_Mutation p.L50F 0.51 tolerated(0.23) possibly_damaging(0.736) TCGA-78-8662-01 1 160210062 160210062 A G DCAF8 Silent p.L50L 0.51 TCGA-78-8662-01 1 160465953 160465953 G A SLAMF6 Silent p.L94L 0.60 TCGA-78-8662-01 1 16065193 16065193 A G SLC25A34 Silent p.L234L 0.39 TCGA-78-8662-01 1 160681562 160681562 C T CD48 5'UTR 0.33 TCGA-78-8662-01 1 165532811 165532811 C A LRRC52 Missense_Mutation p.P231Q 0.19 tolerated(0.79) benign(0.109) TCGA-78-8662-01 1 167095997 167095997 C A DUSP27 Silent p.A543A 0.26 TCGA-78-8662-01 1 168550398 168550398 C G XCL1 Missense_Mutation p.I95M 0.05 tolerated(0.27) benign(0.019) TCGA-78-8662-01 1 171621450 171621450 T A MYOC Missense_Mutation p.Q101L 0.57 deleterious(0.01) benign(0.097) TCGA-78-8662-01 1 175299237 175299237 G T TNR Missense_Mutation p.R1256S 0.37 deleterious(0.02) probably_damaging(1) TCGA-78-8662-01 1 175325478 175325478 G T TNR Missense_Mutation p.T1032N 0.36 deleterious(0.01) possibly_damaging(0.765) TCGA-78-8662-01 1 175328815 175328815 G T TNR Silent p.A969A 0.23 TCGA-78-8662-01 1 175355264 175355264 C A TNR Missense_Mutation p.V561L 0.33 tolerated(1) benign(0.003) TCGA-78-8662-01 1 179820397 179820397 C G TOR1AIP2 Missense_Mutation p.A46P 0.80 deleterious_low_confidence(0) probably_damaging(0.949) TCGA-78-8662-01 1 181695252 181695252 G T CACNA1E Missense_Mutation p.A732S 0.50 deleterious(0.02) benign(0.364) TCGA-78-8662-01 1 181705535 181705535 C T CACNA1E Silent p.P1129P 0.64 TCGA-78-8662-01 1 182354607 182354608 CA - GLUL Nonsense_Mutation p.C229* 0.71 TCGA-78-8662-01 1 182615794 182615794 C A RGS8 3'UTR 0.82 TCGA-78-8662-01 1 183096490 183096490 G A LAMC1 Nonsense_Mutation p.W1025* 0.83 TCGA-78-8662-01 1 183096491 183096491 G T LAMC1 Missense_Mutation p.W1025C 0.83 tolerated(0.19) probably_damaging(0.926) TCGA-78-8662-01 1 186269342 186269342 G A PRG4 Missense_Mutation p.A66T 0.35 benign(0.103) TCGA-78-8662-01 1 186643598 186643598 C A PTGS2 Missense_Mutation p.V568F 0.72 deleterious(0) possibly_damaging(0.836) TCGA-78-8662-01 1 186644482 186644482 T A PTGS2 Missense_Mutation p.Q435L 0.72 tolerated(0.28) benign(0) TCGA-78-8662-01 1 196709762 196709762 A T CFH Missense_Mutation p.K932N 0.23 tolerated(0.36) benign(0.172) TCGA-78-8662-01 1 196749011 196749011 C G CFHR3 Missense_Mutation p.A113G 0.64 tolerated(0.48) benign(0.266) TCGA-78-8662-01 1 197021958 197021958 C T F13B Missense_Mutation p.C454Y 0.19 deleterious(0) probably_damaging(0.996) TCGA-78-8662-01 1 197704751 197704751 C G DENND1B Intron 0.22 TCGA-78-8662-01 1 201823949 201823949 A T IPO9 Splice_Site p.X271_splice 0.57 TCGA-78-8662-01 1 202275999 202275999 C T LGR6 Silent p.G380G 0.52 TCGA-78-8662-01 1 202407004 202407004 C T PPP1R12B Missense_Mutation p.S437L 0.24 deleterious(0) probably_damaging(0.989) TCGA-78-8662-01 1 203134501 203134501 G T ADORA1 Missense_Mutation p.V152L 0.32 tolerated(1) benign(0.001) TCGA-78-8662-01 1 203652500 203652500 G T ATP2B4 Missense_Mutation p.S56I 0.29 deleterious(0.02) benign(0.091) TCGA-78-8662-01 1 205028233 205028233 T A CNTN2 Missense_Mutation p.L170H 0.65 deleterious(0) probably_damaging(0.934) TCGA-78-8662-01 1 207644134 207644134 C T CR2 Silent p.H425H 0.20 TCGA-78-8662-01 1 207851615 207851615 C A CR1L Missense_Mutation p.S117Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 1 210015674 210015674 G T DIEXF Missense_Mutation p.R517L 0.36 deleterious(0) probably_damaging(0.998) TCGA-78-8662-01 1 210415654 210415655 TG - SERTAD4 Frame_Shift_Del p.C349Lfs*6 0.14 TCGA-78-8662-01 1 211848940 211848940 C A NEK2 5'UTR 0.38 TCGA-78-8662-01 1 214625275 214625275 C A PTPN14 Missense_Mutation p.A73S 0.40 tolerated(0.43) benign(0.186) TCGA-78-8662-01 1 215256618 215256618 G T KCNK2 5'UTR 0.62 TCGA-78-8662-01 1 215342567 215342567 A T KCNK2 Silent p.T167T 0.45 TCGA-78-8662-01 1 215960134 215960134 C T USH2A Missense_Mutation p.S3422N 0.68 benign(0.04) TCGA-78-8662-01 1 215987077 215987077 C G USH2A Splice_Site p.X3247_splice 0.22 TCGA-78-8662-01 1 216144088 216144088 T C USH2A Missense_Mutation p.D2279G 0.34 possibly_damaging(0.589) TCGA-78-8662-01 1 221055671 221055671 T C HLX Missense_Mutation p.L313P 0.90 deleterious(0) probably_damaging(1) TCGA-78-8662-01 1 223438117 223438117 G C SUSD4 Missense_Mutation p.I193M 0.23 tolerated(0.07) benign(0.16) TCGA-78-8662-01 1 230883296 230883296 C A CAPN9 Missense_Mutation p.D18E 0.35 tolerated(0.17) benign(0.006) TCGA-78-8662-01 1 232539872 232539872 T A SIPA1L2 Silent p.L1605L 0.85 TCGA-78-8662-01 1 232619623 232619625 TGG CC SIPA1L2 Frame_Shift_Del p.P632Gfs*16 0.55 TCGA-78-8662-01 1 236631536 236631536 A G EDARADD Silent p.E75E 0.80 TCGA-78-8662-01 1 237774162 237774162 T G RYR2 Missense_Mutation p.L1595R 0.42 possibly_damaging(0.741) TCGA-78-8662-01 1 237955569 237955569 T A RYR2 Silent p.A4576A 0.34 TCGA-78-8662-01 1 246021808 246021808 C T SMYD3 Missense_Mutation p.E356K 0.27 tolerated(0.43) benign(0.092) TCGA-78-8662-01 1 247921099 247921099 C G OR1C1 Missense_Mutation p.G204R 0.68 deleterious(0.01) possibly_damaging(0.697) TCGA-78-8662-01 1 248028028 248028028 C T TRIM58 Nonsense_Mutation p.Q180* 0.91 TCGA-78-8662-01 1 248031156 248031156 G A TRIM58 Missense_Mutation p.G253R 0.55 tolerated(0.24) benign(0.043) TCGA-78-8662-01 1 248031279 248031279 C A TRIM58 Missense_Mutation p.T262K 0.79 tolerated(1) benign(0.005) TCGA-78-8662-01 1 248059807 248059807 G T OR2W3 Missense_Mutation p.G307W 0.95 tolerated(0.26) unknown(0) TCGA-78-8662-01 1 248084691 248084691 C G OR2T8 Silent p.V124V 0.81 TCGA-78-8662-01 1 248113037 248113037 A T OR2L8 Missense_Mutation p.N293I 0.47 deleterious(0) probably_damaging(0.991) TCGA-78-8662-01 1 248685809 248685809 A T OR2G6 Missense_Mutation p.I288F 0.17 deleterious(0.03) benign(0.009) TCGA-78-8662-01 1 27056083 27056083 A G ARID1A Intron 0.49 TCGA-78-8662-01 1 28282764 28282764 C A SMPDL3B Intron 0.75 TCGA-78-8662-01 1 2938440 2938440 T C ACTRT2 Missense_Mutation p.Y64H 0.36 tolerated(0.23) benign(0.014) TCGA-78-8662-01 1 2939013 2939013 C A ACTRT2 Missense_Mutation p.P255T 0.82 deleterious(0.01) benign(0.102) TCGA-78-8662-01 1 31845842 31845842 C G FABP3 Missense_Mutation p.G7A 0.49 tolerated(0.11) benign(0.406) TCGA-78-8662-01 1 32207657 32207657 G A BAI2 Missense_Mutation p.P472S 0.28 tolerated(0.08) benign(0.024) TCGA-78-8662-01 1 32714005 32714005 G C FAM167B Missense_Mutation p.G99R 0.35 tolerated(1) possibly_damaging(0.798) TCGA-78-8662-01 1 32740035 32740035 G T LCK Silent p.T35T 0.28 TCGA-78-8662-01 1 34033207 34033207 G T CSMD2 Missense_Mutation p.T2766N 0.18 tolerated(0.54) possibly_damaging(0.876) TCGA-78-8662-01 1 34090213 34090213 C A CSMD2 Missense_Mutation p.R1804M 0.28 deleterious(0) possibly_damaging(0.792) TCGA-78-8662-01 1 34663231 34663231 G T C1orf94 Missense_Mutation p.Q242H 0.32 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 1 35333195 35333195 G A DLGAP3 Missense_Mutation p.T840I 0.52 deleterious(0) benign(0.333) TCGA-78-8662-01 1 35917321 35917321 C A KIAA0319L Missense_Mutation p.G657V 0.52 deleterious(0) probably_damaging(0.988) TCGA-78-8662-01 1 36767168 36767168 A G THRAP3 Silent p.R839R 0.46 TCGA-78-8662-01 1 3732006 3732006 C A CEP104 Missense_Mutation p.G913V 0.89 deleterious(0) probably_damaging(0.968) TCGA-78-8662-01 1 38511294 38511294 G T POU3F1 Missense_Mutation p.D374E 0.33 tolerated(0.24) benign(0.032) TCGA-78-8662-01 1 40125073 40125073 C T NT5C1A Missense_Mutation p.R276H 0.24 deleterious(0) probably_damaging(1) TCGA-78-8662-01 1 40766795 40766795 C T COL9A2 3'UTR 0.60 TCGA-78-8662-01 1 41232363 41232363 C T NFYC Silent p.T272T 0.24 TCGA-78-8662-01 1 42048659 42048659 C A HIVEP3 Nonsense_Mutation p.E604* 0.30 TCGA-78-8662-01 1 43032146 43032146 G A CCDC30 Silent p.K285K 0.28 TCGA-78-8662-01 1 45469086 45469086 C G HECTD3 3'UTR 0.27 TCGA-78-8662-01 1 46874131 46874131 G T FAAH Missense_Mutation p.V318F 0.29 deleterious(0) possibly_damaging(0.68) TCGA-78-8662-01 1 47078618 47078618 C G MOB3C Missense_Mutation p.E178Q 0.53 tolerated(0.59) possibly_damaging(0.597) TCGA-78-8662-01 1 50575570 50575570 C T ELAVL4 Intron 0.41 TCGA-78-8662-01 1 53930385 53930385 C A DMRTB1 Missense_Mutation p.P276T 0.46 tolerated(0.13) possibly_damaging(0.497) TCGA-78-8662-01 1 54518700 54518700 C A TMEM59 Missense_Mutation p.L54F 0.29 tolerated(0.13) benign(0.312) TCGA-78-8662-01 1 54666261 54666261 G A MRPL37 Silent p.E115E 0.29 TCGA-78-8662-01 1 57216868 57216868 G C C1orf168 Silent p.A412A 0.48 TCGA-78-8662-01 1 57216869 57216869 G T C1orf168 Missense_Mutation p.A412D 0.48 deleterious(0.03) possibly_damaging(0.613) TCGA-78-8662-01 1 59148140 59148140 C T MYSM1 Silent p.G192G 0.37 TCGA-78-8662-01 1 6208940 6208940 C T CHD5 Missense_Mutation p.G453S 0.31 deleterious(0.03) probably_damaging(0.934) TCGA-78-8662-01 1 62321811 62321811 A T INADL Missense_Mutation p.N741I 0.79 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 1 65858466 65858466 T A DNAJC6 Silent p.P607P 0.86 TCGA-78-8662-01 1 65858468 65858468 G T DNAJC6 Missense_Mutation p.S608I 0.86 deleterious(0.02) possibly_damaging(0.691) TCGA-78-8662-01 1 66713189 66713189 C A PDE4B Missense_Mutation p.P110T 0.71 tolerated(0.06) possibly_damaging(0.703) TCGA-78-8662-01 1 70385354 70385354 C A LRRC7 Intron 0.23 TCGA-78-8662-01 1 70742525 70742525 C A ANKRD13C Silent p.P406P 0.43 TCGA-78-8662-01 1 74670181 74670181 G T FPGT Missense_Mutation p.M150I 0.83 deleterious(0.01) benign(0.398) TCGA-78-8662-01 1 74835264 74835264 G A FPGT-TNNI3K Silent p.Q668Q 0.83 TCGA-78-8662-01 1 76345770 76345770 A G MSH4 Silent p.S571S 0.61 TCGA-78-8662-01 1 77752709 77752709 G A AK5 Silent p.L48L 0.73 TCGA-78-8662-01 1 77752710 77752710 G T AK5 Missense_Mutation p.G49C 0.73 deleterious(0) probably_damaging(0.99) TCGA-78-8662-01 1 86954771 86954771 C T CLCA1 Silent p.V425V 0.09 TCGA-78-8662-01 1 874454 874454 C A SAMD11 Silent p.P155P 0.38 TCGA-78-8662-01 1 8931951 8931951 C T ENO1 Silent p.K60K 0.24 TCGA-78-8662-01 1 89599030 89599030 C G GBP7 Missense_Mutation p.E525Q 0.34 deleterious(0.03) probably_damaging(0.996) TCGA-78-8662-01 1 89732104 89732104 T A GBP5 Missense_Mutation p.T265S 0.86 tolerated(0.26) benign(0.001) TCGA-78-8662-01 1 9011664 9011664 G T CA6 Intron 0.93 TCGA-78-8662-01 1 93303069 93303069 A T RPL5 Missense_Mutation p.H195L 0.87 tolerated(0.4) probably_damaging(0.973) TCGA-78-8662-01 1 94639653 94639653 G C ARHGAP29 Silent p.P1186P 0.49 TCGA-78-8662-01 1 980655 980655 C T AGRN Missense_Mutation p.P790L 0.45 deleterious(0) possibly_damaging(0.713) TCGA-78-8662-01 20 10603975 10603975 C T SLX4IP Missense_Mutation p.T392I 0.67 tolerated(0.23) benign(0.001) TCGA-78-8662-01 20 11904039 11904039 G T BTBD3 Missense_Mutation p.G432C 0.92 deleterious(0) probably_damaging(0.981) TCGA-78-8662-01 20 13055014 13055014 T A SPTLC3 Missense_Mutation p.I159N 0.93 tolerated(0.06) probably_damaging(0.95) TCGA-78-8662-01 20 13251266 13251266 G T ISM1 Missense_Mutation p.R85L 0.77 tolerated(0.2) benign(0.06) TCGA-78-8662-01 20 18794767 18794767 C T SCP2D1 Missense_Mutation p.P103L 0.66 tolerated(0.05) possibly_damaging(0.477) TCGA-78-8662-01 20 23065482 23065482 A T CD93 Missense_Mutation p.F450I 0.34 deleterious(0) probably_damaging(0.972) TCGA-78-8662-01 20 2539346 2539346 G C TMC2 Missense_Mutation p.E109D 0.50 tolerated_low_confidence(0.23) benign(0.002) TCGA-78-8662-01 20 32258534 32258534 C A NECAB3 Silent p.G73G 0.32 TCGA-78-8662-01 20 39316633 39316633 C A MAFB Silent p.R286R 0.69 TCGA-78-8662-01 20 42143692 42143693 CC T L3MBTL1 Frame_Shift_Del p.P161Qfs*39 0.47 TCGA-78-8662-01 20 42163520 42163520 A T L3MBTL1 Missense_Mutation p.H566L 0.63 tolerated(0.31) possibly_damaging(0.813) TCGA-78-8662-01 20 42694747 42694747 G A TOX2 Silent p.Q452Q 0.62 TCGA-78-8662-01 20 44187550 44187550 T A WFDC8 Missense_Mutation p.K73M 0.73 tolerated(0.09) possibly_damaging(0.592) TCGA-78-8662-01 20 44980779 44980779 C A SLC35C2 Missense_Mutation p.G250W 0.75 deleterious(0) probably_damaging(1) TCGA-78-8662-01 20 47606207 47606207 A G ARFGEF2 Missense_Mutation p.I934V 0.76 tolerated(0.09) benign(0.119) TCGA-78-8662-01 20 56186825 56186825 G A ZBP1 Missense_Mutation p.P278S 0.85 tolerated(0.18) benign(0.118) TCGA-78-8662-01 20 57226937 57226937 G T STX16 5'UTR 0.33 TCGA-78-8662-01 20 57829699 57829699 C A ZNF831 Silent p.S1645S 0.74 TCGA-78-8662-01 20 5974339 5974339 C T MCM8 Nonsense_Mutation p.Q810* 0.64 TCGA-78-8662-01 20 61291874 61291874 G T SLCO4A1 Missense_Mutation p.R333L 0.73 tolerated(0.08) probably_damaging(0.929) TCGA-78-8662-01 20 61510928 61510928 C G DIDO1 Missense_Mutation p.R2127P 0.73 possibly_damaging(0.769) TCGA-78-8662-01 20 61511227 61511227 C A DIDO1 Silent p.L2027L 0.82 TCGA-78-8662-01 20 62839665 62839665 G C MYT1 Missense_Mutation p.M372I 0.80 benign(0.039) TCGA-78-8662-01 21 10920082 10920082 A G TPTE Splice_Site p.X390_splice 0.18 TCGA-78-8662-01 21 11039181 11039181 G T BAGE2 RNA 0.06 TCGA-78-8662-01 21 22881368 22881368 T G NCAM2 Silent p.A758A 0.43 TCGA-78-8662-01 21 28307037 28307037 C A ADAMTS5 Missense_Mutation p.Q479H 0.41 deleterious(0.04) benign(0.002) TCGA-78-8662-01 21 30949366 30949366 A C GRIK1 Missense_Mutation p.I683R 0.20 deleterious(0) probably_damaging(0.998) TCGA-78-8662-01 21 30953749 30953749 C A GRIK1 Missense_Mutation p.Q636H 0.44 deleterious(0.03) probably_damaging(0.998) TCGA-78-8662-01 21 31744390 31744390 G T KRTAP13-2 Missense_Mutation p.L48M 0.43 deleterious(0.02) possibly_damaging(0.786) TCGA-78-8662-01 21 31798226 31798226 G C KRTAP13-3 Missense_Mutation p.S2C 0.14 deleterious(0) probably_damaging(0.994) TCGA-78-8662-01 21 31802610 31802610 G C KRTAP13-4 Missense_Mutation p.C6S 0.36 tolerated(0.31) possibly_damaging(0.817) TCGA-78-8662-01 21 31802720 31802720 C A KRTAP13-4 Missense_Mutation p.L43M 0.38 deleterious(0) probably_damaging(0.988) TCGA-78-8662-01 21 31812965 31812965 G T KRTAP15-1 Missense_Mutation p.C107F 0.35 tolerated(0.25) benign(0.003) TCGA-78-8662-01 21 32253394 32253394 C A KRTAP11-1 Silent p.T150T 0.37 TCGA-78-8662-01 21 32502598 32502598 C A TIAM1 Missense_Mutation p.W1326C 0.21 deleterious(0.03) benign(0.361) TCGA-78-8662-01 21 32638823 32638823 C A TIAM1 Missense_Mutation p.G156W 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-78-8662-01 21 34621043 34621043 G C IFNAR2 Missense_Mutation p.V142L 0.22 tolerated(0.11) probably_damaging(0.91) TCGA-78-8662-01 21 37572753 37572753 G T DOPEY2 Missense_Mutation p.V149L 0.41 tolerated(0.11) benign(0.039) TCGA-78-8662-01 21 41151219 41151219 T C IGSF5 Silent p.C307C 0.48 TCGA-78-8662-01 21 41550864 41550864 C T DSCAM Silent p.A979A 0.22 TCGA-78-8662-01 21 42861483 42861483 C A TMPRSS2 Silent p.G129G 0.37 TCGA-78-8662-01 21 45959746 45959746 C A KRTAP10-1 Missense_Mutation p.Q96H 0.37 deleterious(0) unknown(0) TCGA-78-8662-01 21 46086640 46086640 C A KRTAP12-2 Missense_Mutation p.C55F 0.39 deleterious(0) probably_damaging(0.99) TCGA-78-8662-01 22 16266927 16266927 A T POTEH Splice_Site p.X507_splice 0.17 TCGA-78-8662-01 22 16287423 16287423 C A POTEH Missense_Mutation p.G155C 0.37 deleterious(0) probably_damaging(0.928) TCGA-78-8662-01 22 16449630 16449630 C T OR11H1 Missense_Mutation p.A59T 0.18 tolerated(0.1) benign(0.005) TCGA-78-8662-01 22 17073012 17073012 G C CCT8L2 Silent p.V143V 0.38 TCGA-78-8662-01 22 17446138 17446138 G T GAB4 Missense_Mutation p.L437M 0.39 deleterious(0.02) benign(0.29) TCGA-78-8662-01 22 18210164 18210164 C G BCL2L13 Missense_Mutation p.S441C 0.47 tolerated_low_confidence(0.05) possibly_damaging(0.621) TCGA-78-8662-01 22 18846045 18846045 G A BCRP7 RNA 0.10 TCGA-78-8662-01 22 19213017 19213017 T A CLTCL1 Missense_Mutation p.Q696L 0.63 tolerated(0.28) benign(0.011) TCGA-78-8662-01 22 20825748 20825748 G A KLHL22 Silent p.H94H 0.43 TCGA-78-8662-01 22 21172768 21172768 C G PI4KA Intron 0.16 TCGA-78-8662-01 22 21348945 21348945 G T LZTR1 Missense_Mutation p.A572S 0.48 tolerated(0.21) benign(0.377) TCGA-78-8662-01 22 22735420 22735420 C A IGLV1-44 Silent p.A19A 0.23 TCGA-78-8662-01 22 22842024 22842024 T A ZNF280B 3'UTR 0.41 TCGA-78-8662-01 22 24726369 24726369 C T SPECC1L Missense_Mutation p.T789I 0.14 tolerated(0.13) benign(0.111) TCGA-78-8662-01 22 26422706 26422706 G T MYO18B Missense_Mutation p.G2256W 0.46 deleterious(0.05) benign(0.264) TCGA-78-8662-01 22 28193446 28193446 T A MN1 Missense_Mutation p.D1029V 0.07 probably_damaging(0.992) TCGA-78-8662-01 22 29835026 29835026 C A RFPL1 Silent p.S82S 0.39 TCGA-78-8662-01 22 30974976 30974976 C A PES1 Missense_Mutation p.V511L 0.42 deleterious(0.01) benign(0.417) TCGA-78-8662-01 22 32753991 32753991 G C RFPL3 5'UTR 0.18 TCGA-78-8662-01 22 32756681 32756681 C G RFPL3 Missense_Mutation p.S272R 0.18 tolerated(0.3) benign(0.005) TCGA-78-8662-01 22 37326760 37326760 C T CSF2RB Silent p.L300L 0.27 TCGA-78-8662-01 22 37462164 37462164 G T TMPRSS6 Missense_Mutation p.R798S 0.18 deleterious(0) probably_damaging(1) TCGA-78-8662-01 22 37524873 37524873 G A IL2RB Missense_Mutation p.P307S 0.70 deleterious(0) probably_damaging(0.996) TCGA-78-8662-01 22 40070007 40070007 T C CACNA1I Missense_Mutation p.L1608P 0.48 deleterious(0) probably_damaging(0.928) TCGA-78-8662-01 22 43284730 43284730 G A PACSIN2 Silent p.S176S 0.24 TCGA-78-8662-01 22 45681911 45681911 A T UPK3A Missense_Mutation p.M48L 0.27 deleterious(0.03) benign(0.009) TCGA-78-8662-01 22 46709786 46709786 G T GTSE1 Splice_Site p.X310_splice 0.26 TCGA-78-8662-01 2 101648765 101648765 C A TBC1D8 Missense_Mutation p.R619L 0.20 deleterious(0) probably_damaging(1) TCGA-78-8662-01 2 102441838 102441838 G - MAP4K4 Frame_Shift_Del p.N123Tfs*16 0.21 TCGA-78-8662-01 2 102959635 102959635 A G IL1RL1 Silent p.Q274Q 0.21 TCGA-78-8662-01 2 103068614 103068614 G T IL18RAP Silent p.G591G 0.20 TCGA-78-8662-01 2 105890147 105890147 C A TGFBRAP1 Missense_Mutation p.V556F 0.24 deleterious(0.01) benign(0.14) TCGA-78-8662-01 2 106694350 106694350 C A C2orf40 Missense_Mutation p.H139N 0.09 deleterious(0) possibly_damaging(0.584) TCGA-78-8662-01 2 107041106 107041106 A G RGPD3 Missense_Mutation p.L1106P 0.13 deleterious(0.05) probably_damaging(0.987) TCGA-78-8662-01 2 107050739 107050739 C T RGPD3 Missense_Mutation p.G717D 0.14 tolerated(1) benign(0) TCGA-78-8662-01 2 10729738 10729738 A G NOL10 Missense_Mutation p.L521P 0.16 tolerated(0.06) possibly_damaging(0.65) TCGA-78-8662-01 2 107460190 107460190 G A ST6GAL2 Missense_Mutation p.R82C 0.12 benign(0.003) TCGA-78-8662-01 2 108488444 108488444 A G RGPD4 Silent p.E1328E 0.31 TCGA-78-8662-01 2 10911980 10911980 C A ATP6V1C2 Silent p.T162T 0.39 TCGA-78-8662-01 2 109345601 109345601 G C RANBP2 Missense_Mutation p.G29A 0.47 deleterious(0) benign(0.089) TCGA-78-8662-01 2 112856252 112856252 G T TMEM87B Missense_Mutation p.W451C 0.24 deleterious(0) probably_damaging(1) TCGA-78-8662-01 2 11304381 11304381 G T PQLC3 Silent p.L116L 0.21 TCGA-78-8662-01 2 116257116 116257116 G C DPP10 Missense_Mutation p.G105A 0.20 deleterious(0) probably_damaging(0.976) TCGA-78-8662-01 2 120125090 120125090 G A DBI Missense_Mutation p.A60T 0.21 tolerated_low_confidence(0.08) benign(0.125) TCGA-78-8662-01 2 121747417 121747417 G A GLI2 Silent p.L1309L 0.35 TCGA-78-8662-01 2 121747418 121747418 G T GLI2 Missense_Mutation p.A1310S 0.36 tolerated_low_confidence(0.26) benign(0.141) TCGA-78-8662-01 2 124783125 124783125 G T CNTNAP5 5'UTR 0.50 TCGA-78-8662-01 2 125284887 125284887 C A CNTNAP5 Silent p.S500S 0.48 TCGA-78-8662-01 2 128409221 128409221 C - GPR17 Frame_Shift_Del p.R333Afs*29 0.28 TCGA-78-8662-01 2 130737810 130737810 C A RAB6C Missense_Mutation p.T41N 0.24 tolerated_low_confidence(0.21) benign(0.045) TCGA-78-8662-01 2 130737811 130737811 C A RAB6C Silent p.T41T 0.24 TCGA-78-8662-01 2 131487188 131487188 G T GPR148 Missense_Mutation p.R155L 0.46 tolerated(0.09) benign(0.107) TCGA-78-8662-01 2 131520160 131520160 A T AMER3 Missense_Mutation p.E172V 0.46 deleterious(0) probably_damaging(0.994) TCGA-78-8662-01 2 131704260 131704260 G A ARHGEF4 Intron 0.29 TCGA-78-8662-01 2 132277107 132277107 G T AC093838.4 Splice_Site 0.18 TCGA-78-8662-01 2 133489362 133489362 G T NCKAP5 Silent p.T1797T 0.48 TCGA-78-8662-01 2 139428365 139428365 A T NXPH2 3'UTR 0.60 TCGA-78-8662-01 2 139428683 139428683 G T NXPH2 Missense_Mutation p.L202M 0.15 tolerated(0.17) possibly_damaging(0.714) TCGA-78-8662-01 2 140992361 140992361 A C LRP1B Silent p.T4551T 0.16 TCGA-78-8662-01 2 141108376 141108376 C A LRP1B Missense_Mutation p.S3961I 0.39 benign(0.403) TCGA-78-8662-01 2 141458077 141458077 T G LRP1B Missense_Mutation p.T2181P 0.08 benign(0.004) TCGA-78-8662-01 2 141459780 141459780 C T LRP1B Missense_Mutation p.V2078M 0.15 possibly_damaging(0.608) TCGA-78-8662-01 2 141641455 141641455 G T LRP1B Missense_Mutation p.S1367Y 0.22 benign(0.107) TCGA-78-8662-01 2 141660563 141660563 T C LRP1B Missense_Mutation p.H1231R 0.48 benign(0) TCGA-78-8662-01 2 141665618 141665618 A C LRP1B Missense_Mutation p.C1116W 0.16 probably_damaging(0.984) TCGA-78-8662-01 2 141773448 141773448 T G LRP1B Silent p.I669I 0.26 TCGA-78-8662-01 2 149227685 149227685 G A MBD5 Missense_Mutation p.A725T 0.53 tolerated(0.22) benign(0.197) TCGA-78-8662-01 2 1546306 1546306 T - TPO 3'UTR 0.24 TCGA-78-8662-01 2 15615861 15615861 G T NBAS Missense_Mutation p.P431T 0.12 tolerated(0.07) probably_damaging(0.982) TCGA-78-8662-01 2 158167755 158167755 A T GALNT5 Missense_Mutation p.L906F 0.52 tolerated(0.71) probably_damaging(0.927) TCGA-78-8662-01 2 160035669 160035669 G A TANC1 Silent p.E835E 0.25 TCGA-78-8662-01 2 160087296 160087296 G C TANC1 Missense_Mutation p.V1787L 0.25 tolerated_low_confidence(0.67) benign(0.027) TCGA-78-8662-01 2 160605381 160605381 G C MARCH7 Missense_Mutation p.R527T 0.27 tolerated(0.09) probably_damaging(0.992) TCGA-78-8662-01 2 163393574 163393574 A G KCNH7 Silent p.C108C 0.15 TCGA-78-8662-01 2 165795998 165795998 G A SLC38A11 Missense_Mutation p.P111S 0.18 deleterious(0) probably_damaging(0.997) TCGA-78-8662-01 2 166866286 166866286 G A SCN1A Silent p.L1315L 0.26 TCGA-78-8662-01 2 166870310 166870310 G T SCN1A Missense_Mutation p.H1217N 0.46 deleterious(0) probably_damaging(1) TCGA-78-8662-01 2 166900420 166900420 T C SCN1A Missense_Mutation p.N601S 0.26 tolerated(0.55) benign(0.095) TCGA-78-8662-01 2 166903433 166903433 G A SCN1A Silent p.F408F 0.05 TCGA-78-8662-01 2 166903434 166903434 A T SCN1A Missense_Mutation p.F408Y 0.05 deleterious(0) probably_damaging(0.994) TCGA-78-8662-01 2 167288989 167288989 T - SCN7A Frame_Shift_Del p.S811Afs*35 0.23 TCGA-78-8662-01 2 168104261 168104261 C A XIRP2 Missense_Mutation p.T2120N 0.42 benign(0.015) TCGA-78-8662-01 2 168726230 168726230 C A B3GALT1 Nonsense_Mutation p.Y227* 0.42 TCGA-78-8662-01 2 169791830 169791830 C A ABCB11 Missense_Mutation p.A974S 0.43 tolerated(0.84) possibly_damaging(0.483) TCGA-78-8662-01 2 170022537 170022537 C A LRP2 Missense_Mutation p.R3888L 0.23 probably_damaging(0.996) TCGA-78-8662-01 2 170042337 170042337 T A LRP2 Missense_Mutation p.Y3174F 0.48 benign(0.076) TCGA-78-8662-01 2 170558031 170558031 G T PHOSPHO2 Missense_Mutation p.V184F 0.21 tolerated(1) benign(0.003) TCGA-78-8662-01 2 175939547 175939547 A G ATF2 Silent p.D436D 0.43 TCGA-78-8662-01 2 176947025 176947025 C A EVX2 Missense_Mutation p.A194S 0.34 deleterious(0.04) probably_damaging(0.999) TCGA-78-8662-01 2 176988905 176988905 C G HOXD9 3'UTR 0.48 TCGA-78-8662-01 2 177036440 177036440 G T HOXD3 Missense_Mutation p.R246L 0.52 deleterious(0) benign(0.001) TCGA-78-8662-01 2 177054969 177054969 G A HOXD1 3'UTR 0.40 TCGA-78-8662-01 2 179350367 179350367 G T PLEKHA3 Splice_Site p.X14_splice 0.29 TCGA-78-8662-01 2 179350368 179350368 G T PLEKHA3 Missense_Mutation p.G14V 0.29 deleterious(0) probably_damaging(0.929) TCGA-78-8662-01 2 179397006 179397006 G T TTN Missense_Mutation p.T34779N 0.47 TCGA-78-8662-01 2 179407507 179407507 G A TTN Silent p.H32358H 0.21 TCGA-78-8662-01 2 179411104 179411104 C T TTN Missense_Mutation p.G31652R 0.38 TCGA-78-8662-01 2 179481478 179481478 C T TTN Silent p.G16046G 0.13 TCGA-78-8662-01 2 179497997 179497997 T C TTN Missense_Mutation p.T14335A 0.31 TCGA-78-8662-01 2 179528547 179528547 T G TTN Missense_Mutation p.K12149N 0.09 TCGA-78-8662-01 2 179575824 179575824 C A TTN Missense_Mutation p.G9380V 0.41 TCGA-78-8662-01 2 179583949 179583949 C G TTN Silent p.T8056T 0.42 TCGA-78-8662-01 2 179599131 179599131 T A TTN Silent p.A5140A 0.16 TCGA-78-8662-01 2 179611704 179611704 G T TTN Intron 0.41 TCGA-78-8662-01 2 179612797 179612797 C A TTN Intron 0.33 TCGA-78-8662-01 2 179615757 179615757 G - TTN Intron 0.28 TCGA-78-8662-01 2 182766522 182766522 A T SSFA2 Missense_Mutation p.T248S 0.82 tolerated(0.09) probably_damaging(0.998) TCGA-78-8662-01 2 185731096 185731096 G T ZNF804A Missense_Mutation p.D38Y 0.39 deleterious(0) possibly_damaging(0.575) TCGA-78-8662-01 2 187694608 187694608 C A ZSWIM2 Splice_Site p.X314_splice 0.39 TCGA-78-8662-01 2 190569877 190569877 T C ANKAR Missense_Mutation p.Y613H 0.28 deleterious(0.03) probably_damaging(0.997) TCGA-78-8662-01 2 207459539 207459539 G A ADAM23 Missense_Mutation p.M719I 0.76 tolerated(0.23) benign(0.286) TCGA-78-8662-01 2 207988583 207988583 C A KLF7 Missense_Mutation p.K216N 0.82 deleterious(0.01) probably_damaging(0.933) TCGA-78-8662-01 2 208811222 208811222 T A PLEKHM3 Missense_Mutation p.I521L 0.70 deleterious(0.01) probably_damaging(0.955) TCGA-78-8662-01 2 212248729 212248729 G T ERBB4 Missense_Mutation p.L1180I 0.75 tolerated(0.52) benign(0.002) TCGA-78-8662-01 2 21229205 21229205 G T APOB Missense_Mutation p.T3512N 0.40 benign(0.005) TCGA-78-8662-01 2 219857787 219857787 C A CRYBA2 Nonsense_Mutation p.E38* 0.42 TCGA-78-8662-01 2 224765921 224765921 G A WDFY1 Missense_Mutation p.T155M 0.35 tolerated(0.08) possibly_damaging(0.582) TCGA-78-8662-01 2 225266640 225266640 C A FAM124B 5'UTR 1.00 TCGA-78-8662-01 2 226447714 226447714 G T NYAP2 Missense_Mutation p.K527N 0.65 deleterious(0) probably_damaging(0.913) TCGA-78-8662-01 2 229890723 229890723 T A PID1 Silent p.R124R 0.43 TCGA-78-8662-01 2 231775564 231775564 G A GPR55 Silent p.N38N 0.46 TCGA-78-8662-01 2 238303830 238303830 C A COL6A3 Missense_Mutation p.A37S 0.71 possibly_damaging(0.887) TCGA-78-8662-01 2 240984726 240984726 A C OR6B3 Missense_Mutation p.L255W 0.86 deleterious(0) possibly_damaging(0.838) TCGA-78-8662-01 2 241700763 241700763 C A KIF1A Silent p.A716A 0.83 TCGA-78-8662-01 2 26804203 26804203 G A CIB4 3'UTR 0.45 TCGA-78-8662-01 2 26998466 26998466 G A SLC35F6 Missense_Mutation p.A153T 0.52 tolerated(0.1) benign(0.3) TCGA-78-8662-01 2 27601659 27601659 C A ZNF513 Silent p.V158V 0.16 TCGA-78-8662-01 2 27657349 27657349 C T NRBP1 Silent p.I149I 0.07 TCGA-78-8662-01 2 29240706 29240706 T A FAM179A Missense_Mutation p.L415Q 0.46 deleterious(0.02) benign(0.059) TCGA-78-8662-01 2 31178781 31178781 G A GALNT14 Nonsense_Mutation p.Q182* 0.40 TCGA-78-8662-01 2 31628799 31628799 G T XDH Missense_Mutation p.T25N 0.10 tolerated(0.18) possibly_damaging(0.641) TCGA-78-8662-01 2 32774454 32774454 G T BIRC6 Silent p.G4350G 0.47 TCGA-78-8662-01 2 33359933 33359933 C A LTBP1 Missense_Mutation p.S369R 0.49 tolerated(1) benign(0.005) TCGA-78-8662-01 2 33482447 33482447 T C LTBP1 Missense_Mutation p.V755A 0.21 tolerated(0.25) benign(0.003) TCGA-78-8662-01 2 33588541 33588541 G C LTBP1 Missense_Mutation p.C1452S 0.50 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 2 3392186 3392186 C T TRAPPC12 Silent p.A264A 0.52 TCGA-78-8662-01 2 37032714 37032714 G T VIT Silent p.A432A 0.35 TCGA-78-8662-01 2 40387970 40387970 A T SLC8A1 Missense_Mutation p.L735Q 0.37 deleterious(0) probably_damaging(0.98) TCGA-78-8662-01 2 45169254 45169254 G A SIX3 Missense_Mutation p.R4H 0.22 deleterious_low_confidence(0) possibly_damaging(0.84) TCGA-78-8662-01 2 46845965 46845965 A T CRIPT Missense_Mutation p.R24W 0.13 deleterious(0) benign(0.254) TCGA-78-8662-01 2 47600710 47600710 G T EPCAM Splice_Site p.X62_splice 0.51 TCGA-78-8662-01 2 47748786 47748786 G A KCNK12 Missense_Mutation p.R185C 0.39 deleterious(0) probably_damaging(0.932) TCGA-78-8662-01 2 50463984 50463984 G A NRXN1 Silent p.A1203A 0.46 TCGA-78-8662-01 2 56419858 56419858 G A CCDC85A Missense_Mutation p.E175K 0.35 deleterious(0) probably_damaging(0.998) TCGA-78-8662-01 2 61009052 61009052 C T PAPOLG Silent p.P313P 0.22 TCGA-78-8662-01 2 63215158 63215158 G T EHBP1 Missense_Mutation p.D936Y 0.28 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-78-8662-01 2 669585 669585 C A TMEM18 Missense_Mutation p.D140Y 0.11 deleterious(0.01) unknown(0) TCGA-78-8662-01 2 68400495 68400495 G A PNO1 Missense_Mutation p.G213S 0.25 deleterious(0) probably_damaging(0.962) TCGA-78-8662-01 2 69092999 69092999 A T BMP10 Missense_Mutation p.Y347N 0.56 deleterious(0) probably_damaging(1) TCGA-78-8662-01 2 69300231 69300231 G T ANTXR1 Nonsense_Mutation p.E164* 0.61 TCGA-78-8662-01 2 70680406 70680406 T C TGFA Missense_Mutation p.H140R 0.28 deleterious_low_confidence(0.04) benign(0.014) TCGA-78-8662-01 2 70903900 70903900 C G ADD2 Intron 0.53 TCGA-78-8662-01 2 74399725 74399725 T A MOB1A Missense_Mutation p.I57F 0.54 deleterious(0.01) benign(0.145) TCGA-78-8662-01 2 74399726 74399726 C A MOB1A Missense_Mutation p.W56C 0.54 deleterious(0) probably_damaging(1) TCGA-78-8662-01 2 74652347 74652347 G A WDR54 Missense_Mutation p.A261T 0.04 deleterious(0) benign(0.434) TCGA-78-8662-01 2 76975837 76975837 T C LRRTM4 Missense_Mutation p.E586G 0.23 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-78-8662-01 2 77746474 77746474 A T LRRTM4 Missense_Mutation p.I174K 0.24 deleterious(0) benign(0.331) TCGA-78-8662-01 2 77748825 77748826 - AT LRRTM4 5'UTR 0.21 TCGA-78-8662-01 2 79363870 79363870 C A REG1P RNA 0.18 TCGA-78-8662-01 2 79385590 79385590 C A REG3A Splice_Site p.X66_splice 0.14 TCGA-78-8662-01 2 80101436 80101436 G C CTNNA2 Missense_Mutation p.G274R 0.10 deleterious(0) probably_damaging(0.996) TCGA-78-8662-01 2 80529270 80529270 G A LRRTM1 3'UTR 0.29 TCGA-78-8662-01 2 80530452 80530452 T G LRRTM1 Missense_Mutation p.T165P 0.45 tolerated(0.09) possibly_damaging(0.773) TCGA-78-8662-01 2 80530539 80530539 T A LRRTM1 Missense_Mutation p.M136L 0.26 tolerated(0.63) benign(0.001) TCGA-78-8662-01 2 80530540 80530540 G T LRRTM1 Silent p.P135P 0.25 TCGA-78-8662-01 2 80782958 80782958 T C CTNNA2 Missense_Mutation p.Y561H 0.19 deleterious(0.01) possibly_damaging(0.618) TCGA-78-8662-01 2 85780471 85780471 T A GGCX Missense_Mutation p.R347W 0.42 deleterious(0) probably_damaging(0.965) TCGA-78-8662-01 2 86014057 86014057 C G ATOH8 3'UTR 0.26 TCGA-78-8662-01 2 86302202 86302202 T A POLR1A Missense_Mutation p.Q521L 0.18 deleterious(0) probably_damaging(0.909) TCGA-78-8662-01 2 88047658 88047658 C T PLGLB2 5'UTR 0.24 TCGA-78-8662-01 2 89384826 89384826 G T IGKV3-15 Silent p.P64P 0.43 TCGA-78-8662-01 2 89399787 89399787 A T IGKV1-16 Missense_Mutation p.L14Q 0.18 deleterious(0) probably_damaging(0.985) TCGA-78-8662-01 2 89442166 89442166 G C IGKV3-20 Missense_Mutation p.P80R 0.19 deleterious(0) probably_damaging(0.987) TCGA-78-8662-01 2 90044135 90044135 G A IGKV2D-24 Missense_Mutation p.S19N 0.13 tolerated(0.15) benign(0.02) TCGA-78-8662-01 2 90044187 90044187 A G IGKV2D-24 Silent p.G36G 0.19 TCGA-78-8662-01 2 90139145 90139145 T A IGKV1D-16 Missense_Mutation p.L14Q 0.05 deleterious(0) probably_damaging(0.99) TCGA-78-8662-01 2 9463311 9463311 A G ASAP2 Missense_Mutation p.I178V 0.45 tolerated(0.56) benign(0.005) TCGA-78-8662-01 2 9588429 9588429 C T CPSF3 Missense_Mutation p.R449W 0.21 deleterious(0.02) possibly_damaging(0.878) TCGA-78-8662-01 2 96012782 96012782 C A KCNIP3 Intron 0.34 TCGA-78-8662-01 2 98340942 98340942 G T ZAP70 Intron 0.23 TCGA-78-8662-01 2 98351109 98351109 T C ZAP70 Missense_Mutation p.I339T 0.44 deleterious(0.01) benign(0.311) TCGA-78-8662-01 2 99012955 99012955 T G CNGA3 Missense_Mutation p.F441C 0.46 deleterious(0) possibly_damaging(0.826) TCGA-78-8662-01 3 100058764 100058764 A T NIT2 Missense_Mutation p.I78L 0.23 tolerated(0.06) benign(0.038) TCGA-78-8662-01 3 101047363 101047363 C A SENP7 Missense_Mutation p.L941F 0.26 deleterious(0.01) benign(0.443) TCGA-78-8662-01 3 107492007 107492007 A T BBX Missense_Mutation p.E480V 0.24 deleterious(0) probably_damaging(0.996) TCGA-78-8662-01 3 108220590 108220590 A T MYH15 Missense_Mutation p.L123Q 0.27 deleterious(0) probably_damaging(1) TCGA-78-8662-01 3 108541777 108541777 G T TRAT1 Translation_Start_Site p.M1? 0.24 tolerated_low_confidence(0.14) benign(0.003) TCGA-78-8662-01 3 111730692 111730692 A G TAGLN3 Silent p.G146G 0.27 TCGA-78-8662-01 3 11301854 11301854 G T HRH1 Missense_Mutation p.R377S 0.82 tolerated(0.36) benign(0.124) TCGA-78-8662-01 3 113784146 113784146 A G QTRTD1 Silent p.L26L 0.53 TCGA-78-8662-01 3 119886840 119886840 T C GPR156 Missense_Mutation p.Q495R 0.84 tolerated(0.15) benign(0.282) TCGA-78-8662-01 3 121207186 121207186 T A POLQ Missense_Mutation p.D1531V 0.79 tolerated(0.3) benign(0.157) TCGA-78-8662-01 3 123038556 123038556 G C ADCY5 Missense_Mutation p.L741V 0.69 deleterious(0.03) possibly_damaging(0.53) TCGA-78-8662-01 3 12458304 12458304 C A PPARG Silent p.I307I 0.84 TCGA-78-8662-01 3 130399894 130399894 C A PIK3R4 Missense_Mutation p.V1242F 0.80 deleterious(0) possibly_damaging(0.83) TCGA-78-8662-01 3 133191384 133191384 G T BFSP2 Missense_Mutation p.A407S 0.69 tolerated(0.28) possibly_damaging(0.715) TCGA-78-8662-01 3 136665091 136665091 A G NCK1 Missense_Mutation p.E298G 0.78 tolerated(0.26) benign(0.084) TCGA-78-8662-01 3 137893657 137893657 G C DBR1 5'UTR 0.18 TCGA-78-8662-01 3 141011563 141011563 A T ACPL2 Missense_Mutation p.H320L 0.25 deleterious(0.02) possibly_damaging(0.777) TCGA-78-8662-01 3 142681276 142681276 C A PAQR9 Silent p.P301P 0.84 TCGA-78-8662-01 3 14567024 14567024 C A GRIP2 RNA 0.86 TCGA-78-8662-01 3 145924492 145924492 C A PLSCR4 Nonsense_Mutation p.G59* 0.42 TCGA-78-8662-01 3 147113925 147113925 C A ZIC4 Silent p.A184A 0.77 TCGA-78-8662-01 3 14965551 14965551 C A FGD5 Missense_Mutation p.P1325H 0.77 tolerated(0.26) benign(0.007) TCGA-78-8662-01 3 157817719 157817719 G T SHOX2 Missense_Mutation p.A235D 0.88 deleterious(0.01) probably_damaging(0.944) TCGA-78-8662-01 3 161221480 161221480 C G OTOL1 Missense_Mutation p.T395R 0.81 deleterious(0) probably_damaging(1) TCGA-78-8662-01 3 16237422 16237422 T A GALNT15 Missense_Mutation p.L232H 0.82 deleterious(0.01) probably_damaging(0.981) TCGA-78-8662-01 3 164773049 164773049 C A SI Missense_Mutation p.C482F 0.46 deleterious(0) possibly_damaging(0.778) TCGA-78-8662-01 3 165547328 165547328 C A BCHE Silent p.R498R 0.09 TCGA-78-8662-01 3 167322258 167322258 T A WDR49 Splice_Site 0.70 TCGA-78-8662-01 3 169644787 169644787 C T SAMD7 Missense_Mutation p.T246I 0.29 tolerated(0.24) benign(0.095) TCGA-78-8662-01 3 172166154 172166154 G T GHSR Missense_Mutation p.A17D 0.64 tolerated(0.63) benign(0.005) TCGA-78-8662-01 3 172835237 172835237 C A SPATA16 Missense_Mutation p.K95N 0.42 deleterious(0.01) possibly_damaging(0.607) TCGA-78-8662-01 3 173322696 173322696 C A NLGN1 Missense_Mutation p.P103H 0.43 tolerated(0.13) benign(0.342) TCGA-78-8662-01 3 173996992 173996992 G C NLGN1 Missense_Mutation p.D401H 0.16 deleterious(0) probably_damaging(0.991) TCGA-78-8662-01 3 174974224 174974224 G T NAALADL2 Nonsense_Mutation p.G282* 0.69 TCGA-78-8662-01 3 179080257 179080257 G T MFN1 Missense_Mutation p.V175L 0.46 deleterious(0.04) probably_damaging(0.999) TCGA-78-8662-01 3 179082089 179082089 G T MFN1 Missense_Mutation p.G181C 0.44 deleterious(0) probably_damaging(0.995) TCGA-78-8662-01 3 179093018 179093018 C T MFN1 Missense_Mutation p.S329L 0.50 deleterious(0) benign(0.032) TCGA-78-8662-01 3 180320096 180320096 C G TTC14 Missense_Mutation p.S16C 0.47 deleterious(0) possibly_damaging(0.894) TCGA-78-8662-01 3 180321029 180321029 C G TTC14 Missense_Mutation p.S135C 0.17 deleterious(0.02) benign(0.222) TCGA-78-8662-01 3 183006993 183006993 G T MCF2L2 Missense_Mutation p.P564H 0.24 tolerated(0.07) benign(0.113) TCGA-78-8662-01 3 183888414 183888414 G T DVL3 Silent p.A674A 0.40 TCGA-78-8662-01 3 184090351 184090351 G A THPO Missense_Mutation p.L338F 0.17 tolerated_low_confidence(0.29) benign(0.127) TCGA-78-8662-01 3 184104523 184104523 T C CHRD Missense_Mutation p.C726R 0.44 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 3 195965623 195965623 G A PCYT1A Missense_Mutation p.S347F 0.32 deleterious(0) probably_damaging(0.996) TCGA-78-8662-01 3 196134258 196134258 C T UBXN7 Missense_Mutation p.S27N 0.18 tolerated(0.51) benign(0.003) TCGA-78-8662-01 3 196388625 196388625 C A NRROS 3'UTR 0.50 TCGA-78-8662-01 3 20164264 20164264 A T KAT2B Missense_Mutation p.I461F 0.20 deleterious(0) probably_damaging(0.944) TCGA-78-8662-01 3 3111822 3111822 A T IL5RA 3'UTR 0.89 TCGA-78-8662-01 3 3139623 3139623 G T IL5RA Missense_Mutation p.L214I 0.70 tolerated(0.45) benign(0.21) TCGA-78-8662-01 3 32411496 32411496 A T CMTM8 3'UTR 0.28 TCGA-78-8662-01 3 38627272 38627272 C A SCN5A Missense_Mutation p.W899C 0.23 deleterious(0) probably_damaging(0.987) TCGA-78-8662-01 3 40085546 40085546 T A MYRIP Missense_Mutation p.L39Q 0.79 deleterious(0) benign(0.212) TCGA-78-8662-01 3 42701285 42701285 C T ZBTB47 Silent p.L480L 0.76 TCGA-78-8662-01 3 440067 440067 A T CHL1 Missense_Mutation p.R1084S 0.79 tolerated(0.2) possibly_damaging(0.46) TCGA-78-8662-01 3 46497383 46497383 G T LTF Nonsense_Mutation p.C134* 0.83 TCGA-78-8662-01 3 49680127 49680127 G C BSN Missense_Mutation p.G354R 0.33 unknown(0) TCGA-78-8662-01 3 51749447 51749447 G T GRM2 Missense_Mutation p.C553F 0.41 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 3 58124067 58124067 C T FLNB Silent p.A1671A 0.77 TCGA-78-8662-01 3 65342327 65342327 C T MAGI1 Missense_Mutation p.R1372Q 0.73 tolerated(0.34) unknown(0) TCGA-78-8662-01 3 69072244 69072244 T C TMF1 3'UTR 0.45 TCGA-78-8662-01 3 7620396 7620396 G T GRM7 Silent p.G601G 0.82 TCGA-78-8662-01 3 7721771 7721771 G T GRM7 Missense_Mutation p.M829I 0.39 tolerated(0.59) benign(0.007) TCGA-78-8662-01 3 96963162 96963162 A T EPHA6 Intron 0.44 TCGA-78-8662-01 3 97720472 97720472 T A GABRR3 RNA 0.57 TCGA-78-8662-01 3 98251875 98251875 C T GPR15 Missense_Mutation p.S333L 0.29 tolerated(0.36) benign(0.006) TCGA-78-8662-01 3 98251876 98251876 A T GPR15 Silent p.S333S 0.29 TCGA-78-8662-01 4 100257871 100257871 G A ADH1C 3'UTR 0.72 TCGA-78-8662-01 4 100434274 100434274 C A C4orf17 Silent p.I12I 0.48 TCGA-78-8662-01 4 101961724 101961724 C A PPP3CA Splice_Site p.X386_splice 0.34 TCGA-78-8662-01 4 103822388 103822388 C A SLC9B1 Missense_Mutation p.L478F 0.10 deleterious(0) probably_damaging(0.996) TCGA-78-8662-01 4 109663590 109663590 T A ETNPPL 3'UTR 0.23 TCGA-78-8662-01 4 111470763 111470763 G T ENPEP Nonsense_Mutation p.E769* 0.74 TCGA-78-8662-01 4 111471018 111471018 T C ENPEP Missense_Mutation p.V826A 0.62 deleterious(0.03) benign(0.07) TCGA-78-8662-01 4 113462399 113462399 G A C4orf21 Missense_Mutation p.T1875I 0.76 deleterious(0.02) probably_damaging(0.939) TCGA-78-8662-01 4 114276807 114276807 G A ANK2 Missense_Mutation p.E2345K 0.41 benign(0.018) TCGA-78-8662-01 4 114682291 114682291 C A CAMK2D 5'Flank 0.74 TCGA-78-8662-01 4 123254837 123254837 A T KIAA1109 Missense_Mutation p.K3840M 0.48 probably_damaging(0.91) TCGA-78-8662-01 4 134071829 134071829 C A PCDH10 Missense_Mutation p.N178K 0.32 deleterious(0.04) probably_damaging(0.995) TCGA-78-8662-01 4 139163143 139163143 C A SLC7A11 Silent p.L27L 0.45 TCGA-78-8662-01 4 145568069 145568069 G T HHIP Missense_Mutation p.R81L 0.33 tolerated(0.16) benign(0.004) TCGA-78-8662-01 4 147860969 147860969 T A TTC29 Nonsense_Mutation p.R27* 0.77 TCGA-78-8662-01 4 153691101 153691101 T C TIGD4 Silent p.L352L 0.53 TCGA-78-8662-01 4 154702729 154702730 - T SFRP2 Frame_Shift_Ins p.N254Kfs*48 0.46 TCGA-78-8662-01 4 16597323 16597323 T C LDB2 Intron 0.34 TCGA-78-8662-01 4 169173666 169173666 G T DDX60 Missense_Mutation p.D1233E 0.80 deleterious(0) benign(0.403) TCGA-78-8662-01 4 169632846 169632846 A G PALLD Missense_Mutation p.K579R 0.44 tolerated(0.07) benign(0.341) TCGA-78-8662-01 4 170037448 170037448 G A SH3RF1 Missense_Mutation p.S704L 0.75 tolerated(0.43) benign(0.001) TCGA-78-8662-01 4 186551728 186551728 C T SORBS2 Missense_Mutation p.D337N 0.42 deleterious(0.01) probably_damaging(0.947) TCGA-78-8662-01 4 187509954 187509954 G T FAT1 Missense_Mutation p.P4520Q 0.69 benign(0.37) TCGA-78-8662-01 4 189060940 189060940 C G TRIML1 Missense_Mutation p.S76R 0.84 tolerated(0.22) benign(0.059) TCGA-78-8662-01 4 190883067 190883067 G T FRG1 Missense_Mutation p.L240F 0.66 tolerated(0.32) benign(0.12) TCGA-78-8662-01 4 20569197 20569197 A T SLIT2 Silent p.G969G 0.39 TCGA-78-8662-01 4 23803356 23803356 G C PPARGC1A Missense_Mutation p.L764V 0.38 deleterious(0) unknown(0) TCGA-78-8662-01 4 26487335 26487335 G T CCKAR Missense_Mutation p.P184T 0.24 deleterious(0.04) benign(0.34) TCGA-78-8662-01 4 46042912 46042912 T C GABRG1 3'UTR 0.30 TCGA-78-8662-01 4 46252478 46252478 T C GABRA2 Silent p.E401E 0.57 TCGA-78-8662-01 4 46314713 46314713 G T GABRA2 Missense_Mutation p.F92L 0.19 deleterious(0) probably_damaging(1) TCGA-78-8662-01 4 46976272 46976272 C A GABRA4 Missense_Mutation p.S233I 0.18 deleterious(0.01) probably_damaging(0.939) TCGA-78-8662-01 4 48906501 48906501 C A OCIAD2 Missense_Mutation p.Q22H 0.23 deleterious(0.03) possibly_damaging(0.762) TCGA-78-8662-01 4 5018648 5018648 G A CYTL1 Missense_Mutation p.P81L 0.61 tolerated(0.11) benign(0.377) TCGA-78-8662-01 4 53525279 53525279 C G USP46 Intron 0.55 TCGA-78-8662-01 4 54967887 54967887 A T GSX2 Missense_Mutation p.Y238F 0.29 deleterious(0) probably_damaging(0.992) TCGA-78-8662-01 4 55961050 55961050 C A KDR Missense_Mutation p.D964Y 0.24 deleterious(0) probably_damaging(1) TCGA-78-8662-01 4 62598687 62598687 C A LPHN3 Missense_Mutation p.H204N 0.67 tolerated(0.53) probably_damaging(0.998) TCGA-78-8662-01 4 71024399 71024399 G T C4orf40 Missense_Mutation p.V144L 0.81 tolerated(0.62) unknown(0) TCGA-78-8662-01 4 74318261 74318261 T A AFP Silent p.P524P 0.87 TCGA-78-8662-01 4 79832619 79832619 G C BMP2K Missense_Mutation p.R973P 0.40 deleterious_low_confidence(0) unknown(0) TCGA-78-8662-01 4 81974563 81974563 G T BMP3 Missense_Mutation p.G431V 0.77 deleterious(0.01) probably_damaging(1) TCGA-78-8662-01 4 90857610 90857610 G C MMRN1 Missense_Mutation p.V927L 0.33 tolerated(0.36) benign(0.001) TCGA-78-8662-01 4 95255746 95255746 C T HPGDS Missense_Mutation p.R12K 0.74 deleterious(0.02) possibly_damaging(0.892) TCGA-78-8662-01 4 96166277 96166277 G T UNC5C Missense_Mutation p.T265N 0.82 deleterious(0.04) possibly_damaging(0.9) TCGA-78-8662-01 4 99313112 99313112 A C RAP1GDS1 Missense_Mutation p.Q174P 0.26 deleterious(0) probably_damaging(0.964) TCGA-78-8662-01 5 100147608 100147608 A T ST8SIA4 Missense_Mutation p.N341K 0.35 benign(0.004) TCGA-78-8662-01 5 102888107 102888107 T C NUDT12 Missense_Mutation p.I363M 0.29 deleterious(0.05) probably_damaging(0.995) TCGA-78-8662-01 5 102895036 102895036 C A NUDT12 Missense_Mutation p.V114L 0.38 tolerated(0.33) benign(0.002) TCGA-78-8662-01 5 11023091 11023091 C A CTNND2 Missense_Mutation p.G930V 0.59 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 5 11023092 11023092 C A CTNND2 Splice_Site p.X930_splice 0.62 TCGA-78-8662-01 5 112179437 112179437 G T APC Missense_Mutation p.V2716L 0.34 benign(0.002) TCGA-78-8662-01 5 127637190 127637190 C T FBN2 Missense_Mutation p.C1977Y 0.37 deleterious(0) probably_damaging(1) TCGA-78-8662-01 5 127641324 127641324 T A FBN2 Silent p.I1851I 0.47 TCGA-78-8662-01 5 128994368 128994368 G A ADAMTS19 Missense_Mutation p.C782Y 0.37 deleterious(0) probably_damaging(0.995) TCGA-78-8662-01 5 1318506 1318506 G A CLPTM1L Missense_Mutation p.T532M 0.20 deleterious(0.03) benign(0.001) TCGA-78-8662-01 5 134724809 134724809 T A H2AFY 5'UTR 0.29 TCGA-78-8662-01 5 134914177 134914177 C A CXCL14 Silent p.V51V 0.32 TCGA-78-8662-01 5 135207326 135207326 G A SLC25A48 Intron 0.35 TCGA-78-8662-01 5 135398955 135398955 C T TGFBI 3'UTR 0.42 TCGA-78-8662-01 5 135692335 135692335 G T TRPC7 Missense_Mutation p.N247K 0.35 tolerated(0.3) possibly_damaging(0.693) TCGA-78-8662-01 5 13758970 13758970 G C DNAH5 Silent p.A3468A 0.19 TCGA-78-8662-01 5 13766109 13766109 T A DNAH5 Silent p.A3359A 0.45 TCGA-78-8662-01 5 138209401 138209401 G T LRRTM2 Silent p.L283L 0.38 TCGA-78-8662-01 5 139574062 139574062 G C CYSTM1 Missense_Mutation p.E4D 0.38 tolerated_low_confidence(0.57) unknown(0) TCGA-78-8662-01 5 139943801 139943801 G A APBB3 Silent p.I10I 0.39 TCGA-78-8662-01 5 139943888 139943888 T C APBB3 5'Flank 0.24 TCGA-78-8662-01 5 140176053 140176053 C A PCDHA2 Missense_Mutation p.R502S 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.604) TCGA-78-8662-01 5 140176608 140176608 G T PCDHA2 Missense_Mutation p.A687S 0.33 tolerated_low_confidence(0.37) benign(0.022) TCGA-78-8662-01 5 140209125 140209125 C G PCDHA6 Missense_Mutation p.D483E 0.41 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-78-8662-01 5 140209790 140209790 G T PCDHA6 Missense_Mutation p.C705F 0.37 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-78-8662-01 5 140229953 140229953 G T PCDHA9 Missense_Mutation p.G625W 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-78-8662-01 5 140230278 140230278 C T PCDHA9 Missense_Mutation p.A733V 0.38 tolerated_low_confidence(0.06) benign(0.002) TCGA-78-8662-01 5 140432850 140432850 C A PCDHB1 Missense_Mutation p.Q599K 0.38 deleterious(0) benign(0.101) TCGA-78-8662-01 5 140515126 140515126 A T PCDHB5 Missense_Mutation p.E37V 0.36 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-78-8662-01 5 140562342 140562342 G C PCDHB16 Missense_Mutation p.G70R 0.39 deleterious_low_confidence(0.02) benign(0.301) TCGA-78-8662-01 5 140605042 140605042 C T PCDHB14 Silent p.T655T 0.45 TCGA-78-8662-01 5 140725527 140725527 G C PCDHGA3 Missense_Mutation p.V643L 0.39 tolerated_low_confidence(0.06) benign(0.428) TCGA-78-8662-01 5 140731825 140731825 G A PCDHGB1 Silent p.E666E 0.41 TCGA-78-8662-01 5 140801189 140801189 C T PCDHGA11 Missense_Mutation p.P132L 0.18 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-78-8662-01 5 149681798 149681798 G T ARSI Missense_Mutation p.P47T 0.26 deleterious(0.01) probably_damaging(1) TCGA-78-8662-01 5 150885486 150885486 C T FAT2 Silent p.L4230L 0.37 TCGA-78-8662-01 5 150922791 150922791 C A FAT2 Missense_Mutation p.V2633F 0.33 possibly_damaging(0.756) TCGA-78-8662-01 5 150925166 150925166 T G FAT2 Missense_Mutation p.Y1841S 0.32 benign(0.315) TCGA-78-8662-01 5 150932752 150932752 C A FAT2 Missense_Mutation p.W1381L 0.24 possibly_damaging(0.861) TCGA-78-8662-01 5 151784150 151784150 C A NMUR2 Silent p.V175V 0.43 TCGA-78-8662-01 5 153035390 153035390 A G GRIA1 Silent p.L229L 0.16 TCGA-78-8662-01 5 15936704 15936704 G T FBXL7 Silent p.A295A 0.17 TCGA-78-8662-01 5 15936734 15936734 G T FBXL7 Silent p.L305L 0.52 TCGA-78-8662-01 5 15936875 15936875 G A FBXL7 Silent p.L352L 0.19 TCGA-78-8662-01 5 159992576 159992576 C A ATP10B Missense_Mutation p.G1424W 0.33 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-78-8662-01 5 161128707 161128707 A T GABRA6 Silent p.A430A 0.25 TCGA-78-8662-01 5 161324341 161324341 G T GABRA1 Silent p.P428P 0.35 TCGA-78-8662-01 5 161576295 161576295 C - GABRG2 Frame_Shift_Del p.D408Efs*32 0.20 TCGA-78-8662-01 5 161580273 161580273 C T GABRG2 Missense_Mutation p.H483Y 0.47 tolerated(0.6) probably_damaging(0.995) TCGA-78-8662-01 5 16453173 16453173 C A ZNF622 Missense_Mutation p.V419L 0.70 tolerated(0.39) benign(0.037) TCGA-78-8662-01 5 169125406 169125406 G T DOCK2 Silent p.G336G 0.19 TCGA-78-8662-01 5 169482389 169482389 A C DOCK2 Missense_Mutation p.N1432H 0.39 deleterious(0.01) benign(0.394) TCGA-78-8662-01 5 169504840 169504840 A T DOCK2 Missense_Mutation p.S1665C 0.29 deleterious(0.02) benign(0.438) TCGA-78-8662-01 5 169805725 169805725 G T KCNMB1 Missense_Mutation p.L187M 0.39 tolerated(0.12) probably_damaging(1) TCGA-78-8662-01 5 172573920 172573920 A T BNIP1 Nonsense_Mutation p.K46* 0.27 TCGA-78-8662-01 5 172755215 172755215 C A STC2 5'UTR 0.41 TCGA-78-8662-01 5 172755216 172755216 C A STC2 5'UTR 0.40 TCGA-78-8662-01 5 174870011 174870011 G T DRD1 Nonsense_Mutation p.S31* 0.36 TCGA-78-8662-01 5 175110813 175110813 C A HRH2 Missense_Mutation p.L193I 0.37 tolerated(0.76) benign(0.173) TCGA-78-8662-01 5 177020709 177020709 C A TMED9 Missense_Mutation p.P115H 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-78-8662-01 5 177156524 177156524 C A FAM153A Nonsense_Mutation p.E222* 0.32 TCGA-78-8662-01 5 180030140 180030140 C A FLT4 3'UTR 0.70 TCGA-78-8662-01 5 191674 191674 C T LRRC14B Silent p.L7L 0.22 TCGA-78-8662-01 5 19503152 19503152 G T CDH18 Missense_Mutation p.L527I 0.27 deleterious(0.03) possibly_damaging(0.519) TCGA-78-8662-01 5 19571918 19571918 C A CDH18 Missense_Mutation p.K341N 0.16 tolerated(0.1) possibly_damaging(0.885) TCGA-78-8662-01 5 23521163 23521163 C A PRDM9 Missense_Mutation p.S128Y 0.16 deleterious_low_confidence(0.05) benign(0.162) TCGA-78-8662-01 5 23522515 23522515 G T PRDM9 Splice_Site p.X204_splice 0.23 TCGA-78-8662-01 5 24498511 24498511 C A CDH10 Missense_Mutation p.G504V 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-78-8662-01 5 24509757 24509757 C A CDH10 Nonsense_Mutation p.E392* 0.62 TCGA-78-8662-01 5 26915925 26915925 A T CDH9 Silent p.A112A 0.63 TCGA-78-8662-01 5 31429589 31429589 T A DROSHA Missense_Mutation p.N1070I 0.36 deleterious(0.04) benign(0.109) TCGA-78-8662-01 5 33549330 33549330 C G ADAMTS12 Missense_Mutation p.Q1428H 0.07 tolerated(0.38) benign(0.01) TCGA-78-8662-01 5 33561137 33561137 T A ADAMTS12 Missense_Mutation p.S1374C 0.65 deleterious(0) probably_damaging(1) TCGA-78-8662-01 5 33624370 33624370 A T ADAMTS12 Silent p.T703T 0.16 TCGA-78-8662-01 5 35857137 35857137 G T IL7R Nonsense_Mutation p.G20* 0.49 TCGA-78-8662-01 5 36035968 36035968 C T UGT3A2 Silent p.A468A 0.48 TCGA-78-8662-01 5 37815753 37815753 T A GDNF Nonstop_Mutation p.*229Cext*? 0.36 TCGA-78-8662-01 5 38445787 38445787 G A EGFLAM Missense_Mutation p.G824E 0.62 deleterious(0.01) benign(0.059) TCGA-78-8662-01 5 38499618 38499618 C A LIFR Missense_Mutation p.W556C 0.55 deleterious(0) probably_damaging(0.996) TCGA-78-8662-01 5 41009441 41009441 A T MROH2B Missense_Mutation p.L1121I 0.24 deleterious(0) possibly_damaging(0.628) TCGA-78-8662-01 5 42719287 42719287 T A GHR Missense_Mutation p.L560I 0.40 tolerated(0.43) benign(0.142) TCGA-78-8662-01 5 52160863 52160863 G C ITGA1 Missense_Mutation p.C148S 0.15 deleterious(0) benign(0.356) TCGA-78-8662-01 5 54410071 54410071 G A CDC20B Missense_Mutation p.T512M 0.18 tolerated(0.15) probably_damaging(0.97) TCGA-78-8662-01 5 55209304 55209304 G T IL31RA Splice_Site p.X548_splice 0.19 TCGA-78-8662-01 5 6372601 6372601 G A MED10 3'UTR 0.08 TCGA-78-8662-01 5 64070589 64070589 A G CWC27 Silent p.R38R 0.39 TCGA-78-8662-01 5 64824279 64824279 C T CENPK Silent p.K199K 0.41 TCGA-78-8662-01 5 64872726 64872726 G A PPWD1 Silent p.Q330Q 0.27 TCGA-78-8662-01 5 68669882 68669882 C T RAD17 Missense_Mutation p.P90S 0.25 tolerated(0.09) benign(0.084) TCGA-78-8662-01 5 72330522 72330522 G A FCHO2 Missense_Mutation p.V279I 0.46 tolerated(0.42) benign(0.001) TCGA-78-8662-01 5 76249516 76249516 C G CRHBP Missense_Mutation p.L58V 0.57 tolerated(0.06) benign(0.089) TCGA-78-8662-01 5 79616081 79616081 C A SPZ1 Missense_Mutation p.T16N 0.32 deleterious(0.02) possibly_damaging(0.827) TCGA-78-8662-01 5 80338745 80338745 T C RASGRF2 Missense_Mutation p.L113P 0.21 deleterious(0) probably_damaging(0.991) TCGA-78-8662-01 5 80338746 80338746 G T RASGRF2 Silent p.L113L 0.22 TCGA-78-8662-01 5 82786237 82786237 G T VCAN Missense_Mutation p.D131Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 5 82940298 82940298 G C HAPLN1 Missense_Mutation p.T220R 0.47 tolerated(0.14) benign(0.301) TCGA-78-8662-01 5 83362368 83362368 T C EDIL3 Missense_Mutation p.I237V 0.32 tolerated(0.71) benign(0.323) TCGA-78-8662-01 5 85592177 85592177 C A NBPF22P RNA 0.29 TCGA-78-8662-01 5 88047818 88047818 C A MEF2C Missense_Mutation p.V167L 0.39 tolerated(0.1) benign(0.358) TCGA-78-8662-01 5 94858951 94858951 C A TTC37 Missense_Mutation p.G571V 0.35 deleterious(0) probably_damaging(0.993) TCGA-78-8662-01 5 94858952 94858952 C A TTC37 Nonsense_Mutation p.G571* 0.35 TCGA-78-8662-01 5 95746615 95746615 C A PCSK1 Missense_Mutation p.D320Y 0.37 deleterious(0) probably_damaging(1) TCGA-78-8662-01 5 95761523 95761523 C A PCSK1 Splice_Site p.X132_splice 0.42 TCGA-78-8662-01 5 99921934 99921934 G T FAM174A 3'UTR 0.43 TCGA-78-8662-01 6 102516388 102516388 G C GRIK2 3'UTR 0.73 TCGA-78-8662-01 6 107956606 107956606 G T SOBP Missense_Mutation p.G853V 0.77 deleterious(0.04) benign(0.12) TCGA-78-8662-01 6 112461007 112461007 G T LAMA4 Nonsense_Mutation p.Y1019* 0.79 TCGA-78-8662-01 6 123319299 123319299 G T CLVS2 Missense_Mutation p.W126L 0.53 deleterious(0.02) possibly_damaging(0.651) TCGA-78-8662-01 6 125541340 125541340 G T TPD52L1 Splice_Site p.X45_splice 0.78 TCGA-78-8662-01 6 126070978 126070978 A T HEY2 Missense_Mutation p.D19V 0.62 deleterious(0) possibly_damaging(0.459) TCGA-78-8662-01 6 129635886 129635886 C A LAMA2 Nonsense_Mutation p.C1166* 0.93 TCGA-78-8662-01 6 131277234 131277234 T A EPB41L2 Missense_Mutation p.E131V 0.07 tolerated(0.05) probably_damaging(0.983) TCGA-78-8662-01 6 132891611 132891611 C A TAAR6 Missense_Mutation p.L51I 0.24 deleterious(0.01) possibly_damaging(0.858) TCGA-78-8662-01 6 137519309 137519309 T - IFNGR1 Frame_Shift_Del p.E444Sfs*3 0.46 TCGA-78-8662-01 6 142711442 142711442 C T GPR126 Missense_Mutation p.H424Y 0.19 tolerated(0.83) benign(0.008) TCGA-78-8662-01 6 146755300 146755300 G A GRM1 Missense_Mutation p.A985T 0.06 tolerated_low_confidence(0.33) benign(0.015) TCGA-78-8662-01 6 150719261 150719261 G A IYD Silent p.P290P 0.26 TCGA-78-8662-01 6 151914347 151914347 C A CCDC170 Missense_Mutation p.Q467K 0.80 tolerated(0.06) probably_damaging(0.997) TCGA-78-8662-01 6 154521139 154521139 C T IPCEF1 Silent p.L191L 0.45 TCGA-78-8662-01 6 16327489 16327489 C A ATXN1 Silent p.S351S 0.34 TCGA-78-8662-01 6 16327969 16327969 C G ATXN1 Silent p.P191P 0.60 TCGA-78-8662-01 6 165746585 165746585 G A PDE10A Nonsense_Mutation p.R767* 0.25 TCGA-78-8662-01 6 167728758 167728758 G C UNC93A Missense_Mutation p.A398P 0.04 deleterious(0) probably_damaging(0.966) TCGA-78-8662-01 6 167728906 167728906 A T UNC93A Missense_Mutation p.Q447L 0.03 tolerated(0.32) benign(0.001) TCGA-78-8662-01 6 168271164 168271164 G T MLLT4 Missense_Mutation p.A134S 0.85 tolerated(0.42) benign(0.068) TCGA-78-8662-01 6 24178704 24178704 G C DCDC2 Missense_Mutation p.H394D 0.23 tolerated_low_confidence(0.18) benign(0.021) TCGA-78-8662-01 6 25538110 25538110 C G LRRC16A Missense_Mutation p.Q699E 0.21 deleterious(0) probably_damaging(0.913) TCGA-78-8662-01 6 25776864 25776864 C G SLC17A4 Missense_Mutation p.I343M 0.23 deleterious(0.02) benign(0.301) TCGA-78-8662-01 6 26032163 26032163 G T HIST1H3B Nonsense_Mutation p.Y42* 0.29 TCGA-78-8662-01 6 26158712 26158712 G A HIST1H2BD Silent p.G105G 0.18 TCGA-78-8662-01 6 26205175 26205175 C A HIST1H4E Missense_Mutation p.F101L 0.43 tolerated(0.08) benign(0.188) TCGA-78-8662-01 6 26388484 26388484 T G BTN2A2 Missense_Mutation p.L229R 0.17 tolerated(0.07) benign(0.439) TCGA-78-8662-01 6 27841180 27841180 G A HIST1H4L Missense_Mutation p.R37C 0.06 deleterious(0.05) possibly_damaging(0.864) TCGA-78-8662-01 6 28227599 28227599 A C NKAPL Missense_Mutation p.E150D 0.46 deleterious(0.05) unknown(0) TCGA-78-8662-01 6 28539631 28539631 C A SCAND3 3'UTR 0.53 TCGA-78-8662-01 6 28872209 28872209 T G TRIM27 Silent p.R394R 0.26 TCGA-78-8662-01 6 29012154 29012154 A - OR2W1 Frame_Shift_Del p.S267Pfs*26 0.33 TCGA-78-8662-01 6 29323029 29323029 A G OR5V1 Missense_Mutation p.L315S 0.18 tolerated_low_confidence(0.31) benign(0.001) TCGA-78-8662-01 6 30515040 30515040 C A GNL1 Silent p.G430G 0.45 TCGA-78-8662-01 6 30671008 30671008 C A MDC1 Missense_Mutation p.G1913V 0.50 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 6 31106773 31106773 G A PSORS1C2 Silent p.L11L 0.49 TCGA-78-8662-01 6 31584645 31584645 C A AIF1 Missense_Mutation p.P138T 0.40 deleterious(0) probably_damaging(0.968) TCGA-78-8662-01 6 31842568 31842568 G A SLC44A4 Missense_Mutation p.S133L 0.27 tolerated(0.45) benign(0) TCGA-78-8662-01 6 31843870 31843870 C A SLC44A4 Silent p.L42L 0.41 TCGA-78-8662-01 6 32188233 32188233 A T NOTCH4 Missense_Mutation p.C370S 0.39 deleterious(0) probably_damaging(0.997) TCGA-78-8662-01 6 3287225 3287225 T A SLC22A23 Missense_Mutation p.T472S 0.44 tolerated(0.62) benign(0.027) TCGA-78-8662-01 6 33995949 33995949 G C GRM4 Missense_Mutation p.F879L 0.20 tolerated(0.65) benign(0.001) TCGA-78-8662-01 6 35260490 35260490 A G ZNF76 Missense_Mutation p.K364R 0.39 tolerated(0.06) benign(0.204) TCGA-78-8662-01 6 3738375 3738375 A T PXDC1 Silent p.V88V 0.42 TCGA-78-8662-01 6 41162354 41162354 G T TREML2 Silent p.T198T 0.73 TCGA-78-8662-01 6 42893099 42893099 C T PTCRA Silent p.P175P 0.74 TCGA-78-8662-01 6 43109959 43109959 G T PTK7 Nonsense_Mutation p.E665* 0.72 TCGA-78-8662-01 6 47471032 47471032 G A CD2AP Silent p.E7E 0.19 TCGA-78-8662-01 6 47847414 47847414 C T PTCHD4 Missense_Mutation p.C389Y 0.11 deleterious(0) probably_damaging(0.993) TCGA-78-8662-01 6 49676866 49676866 G T CRISP2 Missense_Mutation p.P15Q 0.52 tolerated(0.26) unknown(0) TCGA-78-8662-01 6 49676867 49676867 G T CRISP2 Missense_Mutation p.P15T 0.52 tolerated(0.18) unknown(0) TCGA-78-8662-01 6 50786473 50786473 G T TFAP2B 5'UTR 0.56 TCGA-78-8662-01 6 50791390 50791390 G T TFAP2B Missense_Mutation p.A118S 0.24 tolerated(0.75) benign(0.002) TCGA-78-8662-01 6 51918029 51918029 T A PKHD1 Missense_Mutation p.D662V 0.55 deleterious(0) probably_damaging(0.912) TCGA-78-8662-01 6 52268055 52268055 G T PAQR8 Missense_Mutation p.S15I 0.12 deleterious(0) probably_damaging(0.963) TCGA-78-8662-01 6 53156635 53156635 C A ELOVL5 Missense_Mutation p.R62L 0.24 deleterious(0) possibly_damaging(0.573) TCGA-78-8662-01 6 53518930 53518930 G A KLHL31 Nonsense_Mutation p.Q381* 0.52 TCGA-78-8662-01 6 54066941 54066941 C A MLIP Silent p.S341S 0.11 TCGA-78-8662-01 6 55039415 55039415 C T HCRTR2 Silent p.P10P 0.20 TCGA-78-8662-01 6 56394361 56394361 C A DST Missense_Mutation p.G3204V 0.18 probably_damaging(1) TCGA-78-8662-01 6 56470719 56470719 C G DST Intron 0.55 TCGA-78-8662-01 6 56471670 56471670 T A DST Intron 0.60 TCGA-78-8662-01 6 56480818 56480818 G T DST Intron 0.57 TCGA-78-8662-01 6 64394399 64394399 C G PHF3 Nonsense_Mutation p.S259* 0.19 TCGA-78-8662-01 6 70506702 70506702 T C LMBRD1 Intron 0.48 TCGA-78-8662-01 6 72006410 72006410 C G OGFRL1 Missense_Mutation p.F194L 0.22 tolerated(0.36) benign(0.241) TCGA-78-8662-01 6 7229899 7229899 A T RREB1 Missense_Mutation p.T523S 0.25 deleterious(0) probably_damaging(0.996) TCGA-78-8662-01 6 7301603 7301603 T C SSR1 Silent p.A161A 0.23 TCGA-78-8662-01 6 74512979 74512979 G T CD109 Missense_Mutation p.G972V 0.26 deleterious(0) probably_damaging(1) TCGA-78-8662-01 6 8041435 8041435 C A BLOC1S5 Nonsense_Mutation p.E88* 0.22 TCGA-78-8662-01 6 84644422 84644422 G T CYB5R4 Missense_Mutation p.G308V 0.09 deleterious(0) probably_damaging(1) TCGA-78-8662-01 6 9933538 9933538 A G OFCC1 Missense_Mutation p.F6L 0.16 tolerated(0.13) probably_damaging(0.979) TCGA-78-8662-01 7 100244438 100244438 G A ACTL6B Missense_Mutation p.T318I 0.47 deleterious(0.04) possibly_damaging(0.703) TCGA-78-8662-01 7 100252640 100252640 A T ACTL6B Splice_Site p.X123_splice 0.54 TCGA-78-8662-01 7 100304652 100304652 T A POP7 Missense_Mutation p.S67T 0.39 tolerated(0.7) benign(0.001) TCGA-78-8662-01 7 100552605 100552605 C A MUC3A Silent p.L452L 0.32 TCGA-78-8662-01 7 100684203 100684203 T A MUC17 Missense_Mutation p.M3169K 0.81 benign(0.048) TCGA-78-8662-01 7 100695217 100695217 G T MUC17 Missense_Mutation p.Q4359H 0.78 unknown(0) TCGA-78-8662-01 7 100807439 100807439 G T VGF Missense_Mutation p.S229Y 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.904) TCGA-78-8662-01 7 101183210 101183210 C T COL26A1 Missense_Mutation p.P162S 0.75 tolerated(0.72) benign(0.034) TCGA-78-8662-01 7 101944453 101944453 G T SH2B2 Missense_Mutation p.D250Y 0.50 deleterious(0) probably_damaging(0.974) TCGA-78-8662-01 7 107752304 107752304 C A LAMB4 Missense_Mutation p.V94L 0.35 deleterious(0) benign(0.055) TCGA-78-8662-01 7 112462368 112462368 C G C7orf60 Missense_Mutation p.D217H 0.64 deleterious(0) probably_damaging(0.979) TCGA-78-8662-01 7 1132477 1132477 C T GPER1 Silent p.F371F 0.20 TCGA-78-8662-01 7 113520087 113520087 C A PPP1R3A Nonsense_Mutation p.E354* 0.65 TCGA-78-8662-01 7 11441484 11441484 A G THSD7A Missense_Mutation p.I1450T 0.23 tolerated(0.1) benign(0.232) TCGA-78-8662-01 7 11676215 11676215 G T THSD7A Silent p.L188L 0.23 TCGA-78-8662-01 7 117407144 117407144 A T CTTNBP2 Silent p.T955T 0.64 TCGA-78-8662-01 7 121624034 121624034 G C PTPRZ1 Missense_Mutation p.C264S 0.63 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 7 124464115 124464115 C A POT1 Missense_Mutation p.W602C 0.62 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 7 127222487 127222487 C A GCC1 Missense_Mutation p.D637Y 0.35 deleterious(0) possibly_damaging(0.85) TCGA-78-8662-01 7 135263538 135263538 A G NUP205 Missense_Mutation p.Y306C 0.29 deleterious(0) probably_damaging(0.992) TCGA-78-8662-01 7 135384243 135384243 C T SLC13A4 Silent p.K255K 0.25 TCGA-78-8662-01 7 137330266 137330266 G C DGKI Missense_Mutation p.H252Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 7 137363377 137363377 G T DGKI Missense_Mutation p.H178N 0.25 deleterious(0.01) benign(0.045) TCGA-78-8662-01 7 138453921 138453921 G T ATP6V0A4 Missense_Mutation p.L65I 0.48 tolerated(0.09) possibly_damaging(0.861) TCGA-78-8662-01 7 140481411 140481411 C A BRAF Missense_Mutation p.G466V 0.21 deleterious(0) probably_damaging(0.936) TCGA-78-8662-01 7 141734585 141734585 G T MGAM Missense_Mutation p.D635Y 0.51 deleterious(0) probably_damaging(0.997) TCGA-78-8662-01 7 142001210 142001210 C A TRBV2 Missense_Mutation p.T68K 0.28 TCGA-78-8662-01 7 142111400 142111400 G C TRBV5-7 Missense_Mutation p.S112R 0.25 deleterious(0) possibly_damaging(0.632) TCGA-78-8662-01 7 142111573 142111573 G TT TRBV5-7 Frame_Shift_Ins p.Q55Kfs*16 0.22 TCGA-78-8662-01 7 142326795 142326795 C A TRBV19 Missense_Mutation p.F31L 0.68 tolerated(0.15) benign(0) TCGA-78-8662-01 7 142378655 142378655 C T MTRNR2L6 3'Flank 0.21 TCGA-78-8662-01 7 142560942 142560942 C A EPHB6 5'UTR 0.24 TCGA-78-8662-01 7 142568345 142568345 C A EPHB6 Missense_Mutation p.A955D 0.28 tolerated(0.95) benign(0.021) TCGA-78-8662-01 7 142575511 142575511 G T TRPV6 Missense_Mutation p.T81K 0.25 deleterious(0) probably_damaging(0.975) TCGA-78-8662-01 7 142622658 142622658 C G TRPV5 Missense_Mutation p.R363P 0.05 deleterious(0.02) probably_damaging(0.947) TCGA-78-8662-01 7 142626154 142626154 A G TRPV5 Silent p.I183I 0.23 TCGA-78-8662-01 7 142723379 142723379 G A OR9A2 Silent p.L281L 0.27 TCGA-78-8662-01 7 142829225 142829225 C G PIP Missense_Mutation p.L6V 0.27 deleterious(0.04) benign(0.076) TCGA-78-8662-01 7 143029565 143029565 C A CLCN1 Missense_Mutation p.P407Q 0.22 deleterious(0) probably_damaging(1) TCGA-78-8662-01 7 143573332 143573332 C A FAM115A Missense_Mutation p.V124F 0.24 deleterious(0) probably_damaging(0.988) TCGA-78-8662-01 7 143771507 143771507 G A OR2A25 Silent p.L65L 0.43 TCGA-78-8662-01 7 143771869 143771869 T C OR2A25 Missense_Mutation p.L186P 0.54 deleterious(0.01) benign(0.151) TCGA-78-8662-01 7 143792786 143792786 G A OR2A12 Missense_Mutation p.V196M 0.25 tolerated(0.22) benign(0.089) TCGA-78-8662-01 7 143807468 143807468 C A OR2A2 Missense_Mutation p.Q265K 0.48 deleterious(0.03) benign(0.041) TCGA-78-8662-01 7 144320280 144320280 C G TPK1 Missense_Mutation p.K111N 0.58 tolerated(0.11) possibly_damaging(0.835) TCGA-78-8662-01 7 148496380 148496380 G C CUL1 Missense_Mutation p.R717T 0.23 deleterious(0) probably_damaging(0.947) TCGA-78-8662-01 7 148978869 148978869 G C ZNF783 Missense_Mutation p.R359P 0.33 deleterious(0.02) probably_damaging(0.985) TCGA-78-8662-01 7 149524894 149524894 G - SSPO RNA 0.24 TCGA-78-8662-01 7 150164346 150164346 G T GIMAP8 Missense_Mutation p.R187L 0.33 tolerated(0.47) benign(0.089) TCGA-78-8662-01 7 150171337 150171337 C T GIMAP8 Missense_Mutation p.S307L 0.51 tolerated(0.22) possibly_damaging(0.562) TCGA-78-8662-01 7 150389578 150389578 G C GIMAP2 Missense_Mutation p.W68C 0.35 deleterious(0) probably_damaging(1) TCGA-78-8662-01 7 150490205 150490205 C A TMEM176B Nonsense_Mutation p.E191* 0.56 TCGA-78-8662-01 7 152517526 152517526 A T ACTR3B Missense_Mutation p.K228M 0.25 deleterious(0) probably_damaging(0.992) TCGA-78-8662-01 7 155511121 155511121 G A RBM33 Missense_Mutation p.G415E 0.20 deleterious(0) probably_damaging(0.969) TCGA-78-8662-01 7 157926583 157926583 T C PTPRN2 Missense_Mutation p.K448E 0.20 deleterious(0.04) benign(0.437) TCGA-78-8662-01 7 158824740 158824740 C G VIPR2 Silent p.T330T 0.19 TCGA-78-8662-01 7 18630086 18630086 G T HDAC9 Missense_Mutation p.R131I 0.48 tolerated(0.09) probably_damaging(0.999) TCGA-78-8662-01 7 19748385 19748385 C A TWISTNB Splice_Site p.X85_splice 0.41 TCGA-78-8662-01 7 21788238 21788238 G C DNAH11 Missense_Mutation p.A2858P 0.21 probably_damaging(0.97) TCGA-78-8662-01 7 23728899 23728899 A G FAM221A Missense_Mutation p.H84R 0.18 deleterious(0) probably_damaging(1) TCGA-78-8662-01 7 24756920 24756920 A T DFNA5 Missense_Mutation p.I217N 0.08 deleterious(0) probably_damaging(0.992) TCGA-78-8662-01 7 24854764 24854764 C A OSBPL3 Missense_Mutation p.G696W 0.18 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 7 27194632 27194632 C T HOXA7 Missense_Mutation p.A197T 0.51 tolerated(0.78) unknown(0) TCGA-78-8662-01 7 27285723 27285723 C T EVX1 Silent p.S301S 0.10 TCGA-78-8662-01 7 28996173 28996173 G T AC005013.5 5'Flank 0.36 TCGA-78-8662-01 7 2952982 2952982 C A CARD11 Missense_Mutation p.K986N 0.41 deleterious(0.05) benign(0.382) TCGA-78-8662-01 7 31683202 31683202 T A CCDC129 Missense_Mutation p.C766S 0.49 tolerated(0.29) possibly_damaging(0.845) TCGA-78-8662-01 7 34182894 34182894 G C BMPER Missense_Mutation p.E600Q 0.16 tolerated(0.07) probably_damaging(0.967) TCGA-78-8662-01 7 35288373 35288373 G C TBX20 Missense_Mutation p.P154R 0.16 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 7 43484556 43484556 G A HECW1 Silent p.S595S 0.43 TCGA-78-8662-01 7 43484558 43484558 A G HECW1 Missense_Mutation p.E596G 0.42 deleterious_low_confidence(0.05) benign(0.003) TCGA-78-8662-01 7 43484813 43484813 C T HECW1 Missense_Mutation p.S681L 0.36 deleterious_low_confidence(0.04) benign(0.241) TCGA-78-8662-01 7 45223136 45223136 G T RAMP3 3'UTR 0.36 TCGA-78-8662-01 7 45725757 45725757 C T ADCY1 Missense_Mutation p.S757F 0.40 tolerated(0.27) benign(0.001) TCGA-78-8662-01 7 47876610 47876610 T C PKD1L1 Missense_Mutation p.Y1951C 0.38 deleterious(0.02) possibly_damaging(0.894) TCGA-78-8662-01 7 5024570 5024570 C T RBAK-RBAKDN 5'UTR 0.52 TCGA-78-8662-01 7 50771567 50771567 C A GRB10 Silent p.P30P 0.39 TCGA-78-8662-01 7 62752001 62752001 C A ZNF733P RNA 0.72 TCGA-78-8662-01 7 7283291 7283291 G T C1GALT1 Missense_Mutation p.R342L 0.38 tolerated(0.16) benign(0.013) TCGA-78-8662-01 7 77326001 77326001 C T RSBN1L Missense_Mutation p.P72L 0.08 tolerated_low_confidence(0.09) possibly_damaging(0.859) TCGA-78-8662-01 7 82072745 82072745 G A CACNA2D1 Silent p.L11L 0.96 TCGA-78-8662-01 7 88965353 88965353 C A ZNF804B Missense_Mutation p.D1019E 0.40 tolerated(0.12) benign(0.055) TCGA-78-8662-01 7 92730502 92730502 G A SAMD9 3'UTR 0.54 TCGA-78-8662-01 8 101541808 101541808 C T ANKRD46 Missense_Mutation p.C85Y 0.28 deleterious(0) possibly_damaging(0.712) TCGA-78-8662-01 8 103251114 103251114 C A RRM2B 5'UTR 0.33 TCGA-78-8662-01 8 103298773 103298773 C T UBR5 Missense_Mutation p.S1677N 0.36 tolerated(0.09) probably_damaging(0.914) TCGA-78-8662-01 8 104922687 104922687 A T RIMS2 Intron 0.15 TCGA-78-8662-01 8 105105727 105105727 G T RIMS2 Intron 0.15 TCGA-78-8662-01 8 105361372 105361372 T - DCSTAMP Frame_Shift_Del p.Y198Tfs*34 0.16 TCGA-78-8662-01 8 105463487 105463487 C A DPYS Missense_Mutation p.W137L 0.19 tolerated(0.23) probably_damaging(0.964) TCGA-78-8662-01 8 105509392 105509392 C A LRP12 Missense_Mutation p.C463F 0.41 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 8 105510240 105510240 T C LRP12 Silent p.P180P 0.26 TCGA-78-8662-01 8 106815241 106815241 A T ZFPM2 Silent p.G977G 0.76 TCGA-78-8662-01 8 10756122 10756122 T A XKR6 Silent p.V422V 0.65 TCGA-78-8662-01 8 107773442 107773442 G A ABRA Silent p.H323H 0.04 TCGA-78-8662-01 8 109796730 109796730 G T TMEM74 Silent p.R200R 0.27 TCGA-78-8662-01 8 110454419 110454419 C A PKHD1L1 Missense_Mutation p.T1463K 0.60 tolerated(0.26) benign(0.021) TCGA-78-8662-01 8 113256651 113256651 G C CSMD3 Silent p.T3458T 0.20 TCGA-78-8662-01 8 113256755 113256755 C A CSMD3 Missense_Mutation p.G3424W 0.36 deleterious(0) probably_damaging(0.997) TCGA-78-8662-01 8 113318402 113318403 - T CSMD3 Frame_Shift_Ins p.K2636* 0.21 TCGA-78-8662-01 8 113349026 113349026 C A CSMD3 Missense_Mutation p.G2292C 0.57 deleterious(0) probably_damaging(0.997) TCGA-78-8662-01 8 113402954 113402954 G T CSMD3 Missense_Mutation p.P1958H 0.63 deleterious(0) probably_damaging(0.981) TCGA-78-8662-01 8 113484824 113484824 C A CSMD3 Missense_Mutation p.E1797D 0.20 tolerated(1) benign(0.075) TCGA-78-8662-01 8 113662513 113662513 G C CSMD3 Missense_Mutation p.H1024D 0.65 tolerated(0.18) benign(0.069) TCGA-78-8662-01 8 11400748 11400748 T A BLK Missense_Mutation p.S5R 0.52 tolerated(0.13) benign(0.207) TCGA-78-8662-01 8 118533169 118533169 G T MED30 Silent p.G18G 0.30 TCGA-78-8662-01 8 125103761 125103761 G T FER1L6 Missense_Mutation p.G1497W 0.15 deleterious(0) probably_damaging(0.998) TCGA-78-8662-01 8 125103762 125103762 G T FER1L6 Missense_Mutation p.G1497V 0.15 deleterious(0) probably_damaging(0.983) TCGA-78-8662-01 8 126011933 126011933 G C SQLE Missense_Mutation p.R96S 0.26 tolerated_low_confidence(0.18) benign(0.006) TCGA-78-8662-01 8 128429082 128429082 A G POU5F1B Missense_Mutation p.Y324C 0.43 tolerated(0.16) benign(0.02) TCGA-78-8662-01 8 132052595 132052595 G T ADCY8 5'UTR 0.11 TCGA-78-8662-01 8 135490868 135490868 C A ZFAT Missense_Mutation p.V1197L 0.27 tolerated(0.06) benign(0.413) TCGA-78-8662-01 8 139153528 139153528 A T FAM135B Missense_Mutation p.Y1235N 0.19 deleterious(0.03) probably_damaging(0.968) TCGA-78-8662-01 8 139164699 139164699 G C FAM135B Silent p.S673S 0.33 TCGA-78-8662-01 8 140630668 140630668 C A KCNK9 Missense_Mutation p.A320S 0.30 tolerated(1) benign(0.001) TCGA-78-8662-01 8 141262908 141262908 C A TRAPPC9 Missense_Mutation p.C898F 0.41 deleterious(0.01) probably_damaging(0.992) TCGA-78-8662-01 8 143558557 143558557 C G BAI1 Missense_Mutation p.F380L 0.07 tolerated(0.44) benign(0.418) TCGA-78-8662-01 8 143866675 143866675 G T LY6D Missense_Mutation p.L117M 0.17 tolerated(0.07) unknown(0) TCGA-78-8662-01 8 143994220 143994220 C T CYP11B2 Intron 0.53 TCGA-78-8662-01 8 144776064 144776064 G T ZNF707 Silent p.R160R 0.22 TCGA-78-8662-01 8 16032714 16032714 G T MSR1 Missense_Mutation p.L67I 0.63 tolerated(0.86) benign(0.002) TCGA-78-8662-01 8 3000069 3000069 C G CSMD1 Silent p.L2053L 0.62 TCGA-78-8662-01 8 36698472 36698472 C A KCNU1 Missense_Mutation p.L552I 0.41 tolerated(0.06) possibly_damaging(0.576) TCGA-78-8662-01 8 42586825 42586825 C T CHRNB3 Silent p.F125F 0.18 TCGA-78-8662-01 8 42611013 42611013 C T CHRNA6 Missense_Mutation p.M443I 0.70 tolerated(0.32) benign(0.02) TCGA-78-8662-01 8 42868489 42868489 A G HOOK3 Silent p.T654T 0.22 TCGA-78-8662-01 8 48845659 48845659 T C PRKDC Missense_Mutation p.D566G 0.33 possibly_damaging(0.511) TCGA-78-8662-01 8 52323922 52323922 C A PXDNL Silent p.P650P 0.55 TCGA-78-8662-01 8 52336243 52336243 C A PXDNL Missense_Mutation p.G563C 0.15 deleterious(0) probably_damaging(1) TCGA-78-8662-01 8 52469464 52469464 A G PXDNL Missense_Mutation p.Y106H 0.35 tolerated(0.06) benign(0.443) TCGA-78-8662-01 8 53044617 53044617 G T ST18 Missense_Mutation p.S856Y 0.60 deleterious(0.05) possibly_damaging(0.466) TCGA-78-8662-01 8 53558271 53558271 C A RB1CC1 Silent p.A1326A 0.31 TCGA-78-8662-01 8 57905789 57905789 T A IMPAD1 Missense_Mutation p.Y119F 0.27 tolerated(0.58) benign(0.01) TCGA-78-8662-01 8 59059644 59059644 G T FAM110B Silent p.P285P 0.17 TCGA-78-8662-01 8 59500261 59500261 C A NSMAF Splice_Site p.X769_splice 0.30 TCGA-78-8662-01 8 61654194 61654194 A G CHD7 Missense_Mutation p.H68R 0.50 benign(0.227) TCGA-78-8662-01 8 62465664 62465664 C A ASPH Nonsense_Mutation p.G518* 0.25 TCGA-78-8662-01 8 6782404 6782404 G T DEFA6 Nonsense_Mutation p.S80* 0.69 TCGA-78-8662-01 8 70978624 70978624 C A PRDM14 Missense_Mutation p.Q343H 0.44 deleterious(0) probably_damaging(0.998) TCGA-78-8662-01 8 72756451 72756451 C A MSC 5'UTR 0.23 TCGA-78-8662-01 8 72969235 72969235 T C TRPA1 Missense_Mutation p.K371E 0.32 deleterious(0.01) benign(0.43) TCGA-78-8662-01 8 73849081 73849081 G C KCNB2 Missense_Mutation p.K497N 0.46 tolerated(0.08) benign(0.014) TCGA-78-8662-01 8 77616693 77616693 G T ZFHX4 Missense_Mutation p.V124L 0.50 benign(0.315) TCGA-78-8662-01 8 77618831 77618831 G T ZFHX4 Silent p.L836L 0.78 TCGA-78-8662-01 8 77764510 77764510 C A ZFHX4 Missense_Mutation p.Q1785K 0.31 benign(0.092) TCGA-78-8662-01 8 77765034 77765034 T C ZFHX4 Silent p.L1959L 0.28 TCGA-78-8662-01 8 77767279 77767279 A G ZFHX4 Missense_Mutation p.S2708G 0.49 probably_damaging(0.961) TCGA-78-8662-01 8 86193560 86193560 G T CA13 Silent p.V257V 0.24 TCGA-78-8662-01 8 88249242 88249242 G C CNBD1 Missense_Mutation p.D225H 0.21 tolerated(0.14) benign(0.149) TCGA-78-8662-01 8 89086855 89086855 G T MMP16 Missense_Mutation p.D400E 0.20 tolerated(0.18) benign(0) TCGA-78-8662-01 8 91081256 91081256 G T CALB1 Missense_Mutation p.H114Q 0.43 tolerated(0.26) probably_damaging(0.979) TCGA-78-8662-01 8 92346559 92346559 C A SLC26A7 Silent p.R227R 0.14 TCGA-78-8662-01 8 94747909 94747909 C A RBM12B Missense_Mutation p.G244C 0.20 tolerated(0.07) possibly_damaging(0.789) TCGA-78-8662-01 8 95183122 95183122 A T CDH17 Missense_Mutation p.I292N 0.27 deleterious(0) probably_damaging(1) TCGA-78-8662-01 8 9605636 9605636 A T TNKS Missense_Mutation p.T916S 0.75 tolerated(0.07) probably_damaging(0.992) TCGA-78-8662-01 8 9627713 9627713 G T TNKS Missense_Mutation p.G1280C 0.71 deleterious(0) probably_damaging(1) TCGA-78-8662-01 8 98787896 98787896 G C LAPTM4B 5'UTR 0.22 TCGA-78-8662-01 8 99440715 99440715 C T KCNS2 Missense_Mutation p.R170C 0.32 deleterious(0) probably_damaging(0.99) TCGA-78-8662-01 9 101911461 101911461 G T TGFBR1 Splice_Site p.X463_splice 0.88 TCGA-78-8662-01 9 104356726 104356726 G T PPP3R2 Missense_Mutation p.L163M 0.70 tolerated(0.24) benign(0.069) TCGA-78-8662-01 9 113166663 113166663 A G SVEP1 Missense_Mutation p.S3204P 0.78 possibly_damaging(0.868) TCGA-78-8662-01 9 117047029 117047029 T G COL27A1 Missense_Mutation p.L1320R 0.70 unknown(0) TCGA-78-8662-01 9 117903 117903 C G FOXD4 Missense_Mutation p.G73R 0.15 tolerated(0.08) benign(0.058) TCGA-78-8662-01 9 120476083 120476083 C A TLR4 Silent p.S559S 0.82 TCGA-78-8662-01 9 120476813 120476813 G C TLR4 Missense_Mutation p.G803R 0.34 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 9 129641821 129641821 G A ZBTB34 Missense_Mutation p.R44Q 0.33 deleterious(0.03) benign(0.129) TCGA-78-8662-01 9 130980952 130980952 C A DNM1 Silent p.T109T 0.94 TCGA-78-8662-01 9 133960998 133960998 C A LAMC3 Missense_Mutation p.T1373K 0.29 deleterious(0.01) benign(0.178) TCGA-78-8662-01 9 133961005 133961005 G A LAMC3 Silent p.K1375K 0.29 TCGA-78-8662-01 9 135962379 135962379 G C CELP RNA 0.42 TCGA-78-8662-01 9 138517988 138517988 C A GLT6D1 Missense_Mutation p.D62Y 0.86 deleterious(0) possibly_damaging(0.888) TCGA-78-8662-01 9 138837785 138837785 C A UBAC1 Silent p.T201T 0.72 TCGA-78-8662-01 9 139354264 139354264 C A SEC16A Missense_Mutation p.L1712F 0.17 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 9 139903500 139903501 CC A ABCA2 Frame_Shift_Del p.G2278* 0.44 TCGA-78-8662-01 9 140669663 140669663 A G EHMT1 Missense_Mutation p.K584E 0.24 deleterious(0.03) benign(0.053) TCGA-78-8662-01 9 14722419 14722419 G T CER1 Silent p.G84G 0.79 TCGA-78-8662-01 9 16437217 16437217 G T BNC2 Missense_Mutation p.F325L 0.86 deleterious(0.04) probably_damaging(0.987) TCGA-78-8662-01 9 16870732 16870732 G T BNC2 5'Flank 0.94 TCGA-78-8662-01 9 27950526 27950526 C A LINGO2 Missense_Mutation p.L48F 0.79 tolerated(0.1) possibly_damaging(0.767) TCGA-78-8662-01 9 34564627 34564627 G A CNTFR Silent p.L97L 0.83 TCGA-78-8662-01 9 34709818 34709818 G C CCL21 Nonsense_Mutation p.Y48* 0.07 TCGA-78-8662-01 9 37498216 37498216 G A POLR1E Missense_Mutation p.R294Q 0.35 deleterious(0.02) benign(0.285) TCGA-78-8662-01 9 433929 433929 A T DOCK8 Missense_Mutation p.R1614W 0.77 deleterious(0) possibly_damaging(0.695) TCGA-78-8662-01 9 43629262 43629262 C A SPATA31A6 Splice_Site p.X83_splice 0.73 TCGA-78-8662-01 9 4585491 4585491 A C SLC1A1 Missense_Mutation p.Y503S 0.87 tolerated(0.12) probably_damaging(0.999) TCGA-78-8662-01 9 6984192 6984192 A T KDM4C Missense_Mutation p.K381I 0.25 deleterious(0.01) possibly_damaging(0.522) TCGA-78-8662-01 9 79322334 79322334 G A PRUNE2 Missense_Mutation p.P1619L 0.18 deleterious(0) probably_damaging(0.952) TCGA-78-8662-01 9 8485265 8485265 C G PTPRD Missense_Mutation p.E1039Q 0.28 deleterious(0) probably_damaging(0.989) TCGA-78-8662-01 9 8525010 8525010 T C PTPRD Silent p.E198E 0.59 TCGA-78-8662-01 9 85624577 85624577 T C RASEF Missense_Mutation p.D313G 0.87 deleterious(0.01) possibly_damaging(0.497) TCGA-78-8662-01 9 87317135 87317135 G T NTRK2 Nonsense_Mutation p.G92* 0.64 TCGA-78-8662-01 9 95838224 95838224 G C SUSD3 Missense_Mutation p.E83Q 0.10 tolerated(0.84) possibly_damaging(0.88) TCGA-78-8662-01 9 96294675 96294675 T A FAM120A Intron 0.39 TCGA-78-8662-01 X 100809210 100809210 G A ARMCX1 Missense_Mutation p.A433T 0.18 deleterious(0.03) probably_damaging(0.997) TCGA-78-8662-01 X 101971020 101971020 A T GPRASP2 Missense_Mutation p.E408V 0.78 deleterious(0.02) possibly_damaging(0.796) TCGA-78-8662-01 X 107084478 107084478 T A MID2 Missense_Mutation p.C195S 0.12 deleterious(0) probably_damaging(0.995) TCGA-78-8662-01 X 107842070 107842070 G A COL4A5 Missense_Mutation p.A640T 0.67 unknown(0) TCGA-78-8662-01 X 117814495 117814495 T C DOCK11 Silent p.Y1837Y 0.74 TCGA-78-8662-01 X 118986935 118986935 C A UPF3B 5'UTR 0.39 TCGA-78-8662-01 X 119293264 119293264 C A RHOXF2 Missense_Mutation p.F141L 0.37 tolerated(0.07) probably_damaging(0.992) TCGA-78-8662-01 X 120008815 120008815 G T CT47B1 Missense_Mutation p.T237K 0.32 tolerated(0.75) unknown(0) TCGA-78-8662-01 X 122747329 122747329 G T THOC2 Nonsense_Mutation p.S1533* 0.45 TCGA-78-8662-01 X 125299249 125299249 C A DCAF12L2 Missense_Mutation p.W220L 0.25 deleterious(0) probably_damaging(1) TCGA-78-8662-01 X 125299276 125299276 C A DCAF12L2 Missense_Mutation p.G211V 0.26 deleterious(0) probably_damaging(1) TCGA-78-8662-01 X 125299277 125299277 C A DCAF12L2 Missense_Mutation p.G211C 0.26 deleterious(0) probably_damaging(1) TCGA-78-8662-01 X 129492703 129492703 G T SLC25A14 Silent p.L196L 0.58 TCGA-78-8662-01 X 134427933 134427933 G C ZNF75D Missense_Mutation p.P45R 0.63 deleterious(0.02) probably_damaging(0.999) TCGA-78-8662-01 X 135292203 135292203 C A FHL1 3'UTR 0.68 TCGA-78-8662-01 X 135431880 135431880 C T GPR112 Silent p.P2005P 0.74 TCGA-78-8662-01 X 135443672 135443672 G A GPR112 Nonsense_Mutation p.W2401* 0.61 TCGA-78-8662-01 X 135485475 135485475 C A GPR112 Missense_Mutation p.T2883N 0.67 deleterious(0.02) benign(0.358) TCGA-78-8662-01 X 135770132 135770132 G C ARHGEF6 Missense_Mutation p.Q402E 0.18 tolerated(1) benign(0.001) TCGA-78-8662-01 X 139047582 139047582 C A CXorf66 Missense_Mutation p.G25V 0.64 tolerated(0.16) probably_damaging(0.988) TCGA-78-8662-01 X 139865925 139865925 A T CDR1 Missense_Mutation p.W203R 0.64 tolerated(0.48) possibly_damaging(0.781) TCGA-78-8662-01 X 140996507 140996507 C A MAGEC1 Missense_Mutation p.A1106D 0.55 deleterious(0) unknown(0) TCGA-78-8662-01 X 146280624 146280624 C - MIR513B RNA 0.45 TCGA-78-8662-01 X 148579784 148579784 C A IDS Missense_Mutation p.V188L 0.62 tolerated(0.17) benign(0.074) TCGA-78-8662-01 X 148628315 148628315 G T CXorf40A Missense_Mutation p.C95F 0.50 deleterious(0.04) benign(0.128) TCGA-78-8662-01 X 148798449 148798449 A C MAGEA11 3'UTR 0.62 TCGA-78-8662-01 X 150869059 150869059 G T PRRG3 Missense_Mutation p.V84L 0.66 tolerated(0.14) benign(0.248) TCGA-78-8662-01 X 151869937 151869937 C A MAGEA6 Silent p.I209I 0.64 TCGA-78-8662-01 X 153136581 153136581 C A L1CAM Nonsense_Mutation p.E152* 0.67 TCGA-78-8662-01 X 153284706 153284706 C A IRAK1 Missense_Mutation p.E126D 0.63 tolerated(0.22) benign(0.008) TCGA-78-8662-01 X 154213044 154213044 C G F8 Missense_Mutation p.L235F 0.58 tolerated(0.73) benign(0.003) TCGA-78-8662-01 X 1752060 1752060 G T ASMT Missense_Mutation p.A222S 0.61 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 X 17745930 17745930 C T NHS Missense_Mutation p.T1214I 0.66 deleterious_low_confidence(0.05) benign(0.012) TCGA-78-8662-01 X 22056470 22056470 C A PHEX Intron 0.62 TCGA-78-8662-01 X 22291576 22291576 T C ZNF645 Silent p.H156H 0.64 TCGA-78-8662-01 X 2945508 2945508 C A ARSH Silent p.S397S 0.57 TCGA-78-8662-01 X 30237384 30237384 G T MAGEB2 Missense_Mutation p.M229I 0.54 tolerated(0.34) benign(0.01) TCGA-78-8662-01 X 31341764 31341764 C T DMD Missense_Mutation p.G3059S 0.29 possibly_damaging(0.842) TCGA-78-8662-01 X 31676144 31676144 C A DMD Nonsense_Mutation p.E2664* 0.57 TCGA-78-8662-01 X 3248710 3248710 G C MXRA5 Missense_Mutation p.A98G 0.66 deleterious(0) probably_damaging(1) TCGA-78-8662-01 X 33229450 33229450 G T DMD 5'UTR 0.64 TCGA-78-8662-01 X 34148120 34148120 G C FAM47A Missense_Mutation p.A759G 0.83 deleterious(0.03) probably_damaging(0.971) TCGA-78-8662-01 X 34149292 34149292 C A FAM47A Missense_Mutation p.K368N 0.77 tolerated(0.12) benign(0.165) TCGA-78-8662-01 X 35944173 35944173 T A CXorf22 Missense_Mutation p.S97T 0.40 tolerated(0.11) benign(0.22) TCGA-78-8662-01 X 35993819 35993819 C A CXorf22 Silent p.P834P 0.72 TCGA-78-8662-01 X 36007710 36007710 C A CXorf22 3'UTR 0.82 TCGA-78-8662-01 X 37265461 37265461 G T PRRG1 Splice_Site 0.48 TCGA-78-8662-01 X 44911046 44911046 A C KDM6A Missense_Mutation p.L249F 0.53 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 X 46713481 46713481 C T RP2 Missense_Mutation p.R225W 0.10 tolerated(0.21) benign(0.019) TCGA-78-8662-01 X 47775256 47775256 A T ZNF81 Missense_Mutation p.H404L 0.77 deleterious(0) probably_damaging(0.999) TCGA-78-8662-01 X 54783460 54783460 G C ITIH6 Missense_Mutation p.S1016C 0.62 deleterious(0.01) possibly_damaging(0.58) TCGA-78-8662-01 X 5811171 5811171 G T NLGN4X Missense_Mutation p.P713H 0.54 deleterious(0) probably_damaging(0.996) TCGA-78-8662-01 X 63412647 63412647 T A AMER1 Missense_Mutation p.S174C 0.34 deleterious(0) probably_damaging(0.964) TCGA-78-8662-01 X 65819381 65819381 T C EDA2R Missense_Mutation p.E301G 0.91 deleterious(0.01) benign(0.014) TCGA-78-8662-01 X 70148346 70148346 C T SLC7A3 Missense_Mutation p.D223N 0.50 tolerated(0.12) benign(0.434) TCGA-78-8662-01 X 73063052 73063052 G A XIST RNA 0.57 TCGA-78-8662-01 X 73064054 73064054 G T XIST RNA 0.53 TCGA-78-8662-01 X 76855944 76855944 G C ATRX Missense_Mutation p.P1886A 0.24 probably_damaging(1) TCGA-78-8662-01 X 77225100 77225100 G T PGAM4 Silent p.G12G 0.19 TCGA-78-8662-01 X 77270248 77270248 C A ATP7A Silent p.L832L 0.45 TCGA-78-8662-01 X 77275741 77275741 G T ATP7A Missense_Mutation p.G876V 0.52 deleterious(0.01) possibly_damaging(0.81) TCGA-78-8662-01 X 77528434 77528434 G T CYSLTR1 Silent p.V270V 0.34 TCGA-78-8662-01 X 78011275 78011275 C A LPAR4 Missense_Mutation p.N303K 0.19 deleterious(0) probably_damaging(0.997) TCGA-78-8662-01 X 78216073 78216073 G C P2RY10 Missense_Mutation p.S19T 0.30 tolerated(0.19) benign(0.002) TCGA-78-8662-01 X 79283492 79283492 G A TBX22 Missense_Mutation p.G289D 0.35 tolerated(0.29) benign(0.06) TCGA-78-8662-01 X 80375304 80375304 C A HMGN5 Missense_Mutation p.G10C 0.36 deleterious(0) probably_damaging(0.961) TCGA-78-8662-01 X 82763662 82763662 C A POU3F4 Missense_Mutation p.H110Q 0.38 deleterious(0.03) benign(0.028) TCGA-78-8662-01 X 83723632 83723632 G A HDX Nonsense_Mutation p.Q367* 0.24 TCGA-78-8662-01 X 85211157 85211157 C G CHM Splice_Site p.X389_splice 0.39 TCGA-78-8662-01 X 85218723 85218723 A T CHM Missense_Mutation p.Y217N 0.39 deleterious(0) probably_damaging(1) TCGA-78-8662-01 X 85218725 85218725 G T CHM Missense_Mutation p.T216N 0.38 deleterious(0) possibly_damaging(0.782) TCGA-78-8662-01 X 85403695 85403695 G T DACH2 Missense_Mutation p.R24L 0.50 deleterious(0.01) benign(0.06) TCGA-78-8662-01 X 85906054 85906054 C A DACH2 Missense_Mutation p.A219E 0.31 deleterious(0) possibly_damaging(0.712) TCGA-78-8662-01 X 86773109 86773109 C A KLHL4 Missense_Mutation p.H71Q 0.38 tolerated_low_confidence(0.29) benign(0.016) TCGA-78-8662-01 X 96139985 96139985 C G RPA4 Missense_Mutation p.Q226E 0.65 tolerated(0.51) benign(0.002) TCGA-80-5607-01 10 102089819 102089819 C A PKD2L1 Missense_Mutation p.K14N 0.13 tolerated(0.36) benign(0.001) TCGA-80-5607-01 10 112270036 112270036 C G DUSP5 Missense_Mutation p.S336C 0.24 deleterious(0.04) benign(0.325) TCGA-80-5607-01 10 128974492 128974492 C T FAM196A Silent p.Q56Q 0.30 TCGA-80-5607-01 10 14816578 14816578 C T FAM107B Missense_Mutation p.A29T 0.05 tolerated_low_confidence(0.4) benign(0.002) TCGA-80-5607-01 10 27437885 27437885 G A YME1L1 Nonsense_Mutation p.Q40* 0.25 TCGA-80-5607-01 10 48388984 48388984 A C RBP3 Missense_Mutation p.F632V 0.32 tolerated(0.09) benign(0.202) TCGA-80-5607-01 10 76861687 76861687 C T DUSP13 Intron 0.16 TCGA-80-5607-01 10 81056385 81056385 C T ZMIZ1 Missense_Mutation p.T463M 0.11 possibly_damaging(0.724) TCGA-80-5607-01 11 104905225 104905225 C T CASP1 Intron 0.18 TCGA-80-5607-01 11 106680827 106680827 A C GUCY1A2 Silent p.V528V 0.04 TCGA-80-5607-01 11 108235833 108235833 G C ATM Missense_Mutation p.D2959H 0.19 tolerated(0.09) benign(0.111) TCGA-80-5607-01 11 17794091 17794091 C G KCNC1 Missense_Mutation p.Q484E 0.27 tolerated(0.16) benign(0.228) TCGA-80-5607-01 11 4703674 4703674 C T OR51E2 Missense_Mutation p.E90K 0.27 deleterious(0.03) possibly_damaging(0.831) TCGA-80-5607-01 11 56114262 56114262 C T OR8K1 Missense_Mutation p.H250Y 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-80-5607-01 11 58170261 58170261 C T OR5B3 Missense_Mutation p.A208T 0.26 tolerated_low_confidence(0.09) possibly_damaging(0.562) TCGA-80-5607-01 11 63665725 63665725 A G MARK2 Missense_Mutation p.M104V 0.21 deleterious(0) possibly_damaging(0.544) TCGA-80-5607-01 11 63668051 63668051 G A MARK2 Silent p.L263L 0.34 TCGA-80-5607-01 11 64534684 64534685 - A SF1 Frame_Shift_Ins p.Y586Lfs*111 0.18 TCGA-80-5607-01 11 71725332 71725332 C T NUMA1 Missense_Mutation p.E1073K 0.19 probably_damaging(0.998) TCGA-80-5607-01 12 113303345 113303345 G C RPH3A Missense_Mutation p.K119N 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-80-5607-01 12 121879957 121879957 C T KDM2B Intron 0.17 TCGA-80-5607-01 12 125834220 125834220 C T TMEM132B Missense_Mutation p.S92L 0.19 deleterious(0.02) benign(0.005) TCGA-80-5607-01 12 34179527 34179527 G C ALG10 Missense_Mutation p.E367Q 0.28 tolerated(0.14) benign(0.043) TCGA-80-5607-01 12 49425896 49425896 G A KMT2D Nonsense_Mutation p.R4198* 0.24 TCGA-80-5607-01 12 49730237 49730237 G A C1QL4 Silent p.A8A 0.36 TCGA-80-5607-01 12 53776245 53776245 C T SP1 Nonsense_Mutation p.Q172* 0.26 TCGA-80-5607-01 12 7586192 7586192 C T CD163L1 Missense_Mutation p.D75N 0.26 tolerated(0.26) probably_damaging(0.994) TCGA-80-5607-01 12 98938265 98938265 G A TMPO Missense_Mutation p.E237K 0.23 deleterious(0.01) benign(0.21) TCGA-80-5607-01 13 39454606 39454606 G C FREM2 Missense_Mutation p.E3064D 0.10 tolerated(1) benign(0.002) TCGA-80-5607-01 13 73649905 73649905 G C KLF5 Missense_Mutation p.E419Q 0.24 deleterious(0) probably_damaging(0.988) TCGA-80-5607-01 14 31355424 31355424 A C COCH Silent p.I461I 0.30 TCGA-80-5607-01 14 31589063 31589063 C G HECTD1 Missense_Mutation p.E1750Q 0.21 tolerated(0.31) possibly_damaging(0.727) TCGA-80-5607-01 14 54894543 54894543 C A CNIH1 Missense_Mutation p.V142L 0.18 tolerated(0.07) benign(0.285) TCGA-80-5607-01 14 64522939 64522939 C G SYNE2 Nonsense_Mutation p.S3341* 0.30 TCGA-80-5607-01 15 40751633 40751633 C T BAHD1 Silent p.L324L 0.35 TCGA-80-5607-01 15 44751319 44751319 C G CTDSPL2 Nonsense_Mutation p.S36* 0.29 TCGA-80-5607-01 15 56385610 56385610 G A RFX7 Missense_Mutation p.S1439F 0.12 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-80-5607-01 15 79323749 79323749 G C RASGRF1 Missense_Mutation p.L419V 0.29 deleterious(0) probably_damaging(0.988) TCGA-80-5607-01 15 79323750 79323750 C T RASGRF1 Silent p.E418E 0.29 TCGA-80-5607-01 16 1537675 1537675 C T PTX4 Silent p.Q141Q 0.18 TCGA-80-5607-01 16 15706555 15706555 C G KIAA0430 Silent p.L1111L 0.24 TCGA-80-5607-01 16 20952856 20952856 C T DNAH3 Missense_Mutation p.E3841K 0.26 tolerated(0.33) benign(0.062) TCGA-80-5607-01 16 75563963 75563963 G A CHST5 Missense_Mutation p.A107V 0.19 tolerated(0.06) possibly_damaging(0.604) TCGA-80-5607-01 16 83816885 83816885 C T CDH13 Nonsense_Mutation p.Q695* 0.17 TCGA-80-5607-01 17 17697979 17697979 C T RAI1 Nonsense_Mutation p.Q573* 0.17 TCGA-80-5607-01 17 19186886 19186886 G C EPN2 Missense_Mutation p.E152Q 0.30 deleterious(0) possibly_damaging(0.84) TCGA-80-5607-01 17 29219790 29219790 T G ATAD5 Nonsense_Mutation p.L1475* 0.21 TCGA-80-5607-01 17 42477876 42477876 C T GPATCH8 Silent p.G523G 0.26 TCGA-80-5607-01 17 62271034 62271034 G C TEX2 Silent p.L687L 0.21 TCGA-80-5607-01 18 31322928 31322928 C G ASXL3 Missense_Mutation p.T1039S 0.27 benign(0.002) TCGA-80-5607-01 18 32712020 32712020 G C MAPRE2 Missense_Mutation p.E259Q 0.19 tolerated(0.08) probably_damaging(0.968) TCGA-80-5607-01 18 42530706 42530706 G A SETBP1 Silent p.L467L 0.24 TCGA-80-5607-01 18 56171257 56171257 C G ALPK2 Missense_Mutation p.L2051F 0.19 deleterious(0.01) probably_damaging(0.994) TCGA-80-5607-01 18 56171311 56171311 C G ALPK2 Silent p.L2033L 0.21 TCGA-80-5607-01 18 633421 633421 C T CLUL1 Missense_Mutation p.A327V 0.10 deleterious(0.01) benign(0.266) TCGA-80-5607-01 19 10663624 10663624 C G ATG4D Missense_Mutation p.Q436E 0.13 tolerated(0.07) probably_damaging(0.986) TCGA-80-5607-01 19 37100898 37100898 C G ZNF382 Missense_Mutation p.Q28E 0.22 tolerated(0.28) probably_damaging(0.991) TCGA-80-5607-01 19 39897512 39897512 C T ZFP36 5'UTR 0.14 TCGA-80-5607-01 19 4418063 4418063 G C CHAF1A Missense_Mutation p.R336T 0.19 deleterious(0) unknown(0) TCGA-80-5607-01 19 47700569 47700569 G C SAE1 Missense_Mutation p.Q271H 0.14 tolerated(0.06) benign(0.008) TCGA-80-5607-01 19 49950696 49950696 G T PIH1D1 Missense_Mutation p.F170L 0.15 deleterious(0.04) benign(0.013) TCGA-80-5607-01 19 6937389 6937389 C T EMR1 Silent p.F839F 0.15 TCGA-80-5607-01 1 11142751 11142751 C G EXOSC10 Missense_Mutation p.R425T 0.11 deleterious(0) probably_damaging(1) TCGA-80-5607-01 1 120906126 120906126 G A RP11-439A17.4 5'Flank 0.05 TCGA-80-5607-01 1 150479448 150479448 C T TARS2 Missense_Mutation p.R689C 0.40 tolerated(0.05) benign(0.052) TCGA-80-5607-01 1 156627540 156627540 C G BCAN Silent p.G761G 0.14 TCGA-80-5607-01 1 159890245 159890245 C G TAGLN2 Missense_Mutation p.E19Q 0.24 tolerated(0.07) possibly_damaging(0.598) TCGA-80-5607-01 1 175086186 175086186 C T TNN Missense_Mutation p.S744F 0.20 deleterious(0) probably_damaging(0.992) TCGA-80-5607-01 1 204380655 204380655 C G PPP1R15B 5'UTR 0.30 TCGA-80-5607-01 1 225609951 225609951 C T LBR Missense_Mutation p.G65D 0.24 deleterious(0.03) benign(0.11) TCGA-80-5607-01 1 22927936 22927936 C G EPHA8 Missense_Mutation p.S958C 0.26 deleterious(0) probably_damaging(0.956) TCGA-80-5607-01 1 229790095 229790095 C T URB2 Missense_Mutation p.S1446F 0.35 deleterious(0) probably_damaging(0.966) TCGA-80-5607-01 1 26189836 26189836 G A PAQR7 Silent p.A165A 0.25 TCGA-80-5607-01 1 66098834 66098834 G T LEPR Intron 0.21 TCGA-80-5607-01 20 34451291 34451291 A G PHF20 Silent p.K259K 0.18 TCGA-80-5607-01 20 3675457 3675457 C G SIGLEC1 Missense_Mutation p.D933H 0.23 deleterious(0.01) probably_damaging(0.983) TCGA-80-5607-01 20 48330165 48330165 G A B4GALT5 Silent p.F21F 0.25 TCGA-80-5607-01 20 57227056 57227056 G A STX16 5'UTR 0.20 TCGA-80-5607-01 20 61300394 61300394 G A SLCO4A1 Missense_Mutation p.M663I 0.15 tolerated(0.07) probably_damaging(0.93) TCGA-80-5607-01 21 16339865 16339865 C G NRIP1 Missense_Mutation p.E217Q 0.05 tolerated(0.09) probably_damaging(0.997) TCGA-80-5607-01 21 34975721 34975721 C T CRYZL1 Missense_Mutation p.D152N 0.20 tolerated(0.14) benign(0.071) TCGA-80-5607-01 21 43519164 43519164 A G UMODL1 Missense_Mutation p.R354G 0.23 deleterious(0.02) possibly_damaging(0.557) TCGA-80-5607-01 22 39909758 39909758 C T MIEF1 Silent p.I274I 0.22 TCGA-80-5607-01 2 11053443 11053443 C T KCNF1 Silent p.I297I 0.18 TCGA-80-5607-01 2 133541059 133541059 C G NCKAP5 Missense_Mutation p.E1109Q 0.22 deleterious(0.01) possibly_damaging(0.536) TCGA-80-5607-01 2 160289747 160289747 G T BAZ2B Missense_Mutation p.T474K 0.25 benign(0) TCGA-80-5607-01 2 163133265 163133265 C T IFIH1 Missense_Mutation p.E746K 0.15 deleterious(0.01) benign(0.426) TCGA-80-5607-01 2 167263076 167263076 G A SCN7A Missense_Mutation p.H1355Y 0.24 deleterious(0) probably_damaging(0.989) TCGA-80-5607-01 2 170371130 170371130 C T KLHL41 Missense_Mutation p.S386L 0.17 deleterious(0.02) possibly_damaging(0.694) TCGA-80-5607-01 2 196892737 196892737 C A DNAH7 Missense_Mutation p.D145Y 0.19 deleterious(0.02) benign(0.109) TCGA-80-5607-01 2 218749773 218749773 C T TNS1 Missense_Mutation p.D286N 0.19 deleterious(0) probably_damaging(1) TCGA-80-5607-01 2 228886460 228886460 C G SPHKAP Missense_Mutation p.E222Q 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-80-5607-01 2 231150522 231150522 T C SP140 Silent p.N540N 0.28 TCGA-80-5607-01 2 27720225 27720225 G A GCKR Missense_Mutation p.E59K 0.06 tolerated(0.06) possibly_damaging(0.904) TCGA-80-5607-01 2 55522976 55522976 C T CCDC88A Missense_Mutation p.A1769T 0.26 tolerated(0.39) benign(0.06) TCGA-80-5607-01 2 73651739 73651739 G A ALMS1 Missense_Mutation p.E316K 0.27 possibly_damaging(0.724) TCGA-80-5607-01 3 112299881 112299881 C A SLC35A5 Nonsense_Mutation p.S306* 0.22 TCGA-80-5607-01 3 126735843 126735843 G A PLXNA1 Missense_Mutation p.R1080Q 0.25 tolerated(0.34) benign(0.342) TCGA-80-5607-01 3 143513851 143513851 G A SLC9A9 Silent p.I175I 0.25 TCGA-80-5607-01 3 15301239 15301239 T A SH3BP5 Intron 0.21 TCGA-80-5607-01 3 172674471 172674471 G T SPATA16 Nonsense_Mutation p.Y359* 0.11 TCGA-80-5607-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.23 deleterious(0.02) probably_damaging(0.959) TCGA-80-5607-01 3 38738878 38738878 C A SCN10A Nonsense_Mutation p.E1945* 0.25 TCGA-80-5607-01 3 47079269 47079269 T A SETD2 Splice_Site p.X2413_splice 0.30 TCGA-80-5607-01 4 184931234 184931234 G A STOX2 Missense_Mutation p.E415K 0.25 deleterious(0.03) possibly_damaging(0.67) TCGA-80-5607-01 4 26483452 26483452 G T CCKAR Silent p.V365V 0.17 TCGA-80-5607-01 4 46252312 46252312 C A GABRA2 3'UTR 0.25 TCGA-80-5607-01 4 84374727 84374727 C T HELQ Nonsense_Mutation p.W223* 0.14 TCGA-80-5607-01 5 11364847 11364847 G C CTNND2 Missense_Mutation p.L445V 0.14 tolerated(0.14) benign(0.009) TCGA-80-5607-01 5 114573691 114573691 G A PGGT1B Missense_Mutation p.H115Y 0.22 tolerated(0.18) benign(0.036) TCGA-80-5607-01 5 140182415 140182415 C G PCDHA3 Missense_Mutation p.L545V 0.24 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-80-5607-01 5 140481005 140481005 A G PCDHB3 Missense_Mutation p.N258D 0.26 tolerated_low_confidence(0.21) benign(0.001) TCGA-80-5607-01 5 140580847 140580847 C T PCDHB11 Silent p.L500L 0.26 TCGA-80-5607-01 5 140789016 140789016 C A PCDHGB6 Missense_Mutation p.P416Q 0.19 deleterious(0.04) benign(0.314) TCGA-80-5607-01 5 149221931 149221931 G C PPARGC1B Missense_Mutation p.R936T 0.19 deleterious(0.02) possibly_damaging(0.809) TCGA-80-5607-01 5 160063272 160063272 C A ATP10B Missense_Mutation p.D349Y 0.06 tolerated(0.18) probably_damaging(0.987) TCGA-80-5607-01 5 21817092 21817092 C T CDH12 Missense_Mutation p.D322N 0.15 tolerated(0.22) benign(0.093) TCGA-80-5607-01 5 21817190 21817190 C T CDH12 Missense_Mutation p.G289E 0.16 deleterious(0) probably_damaging(1) TCGA-80-5607-01 5 41382477 41382477 A G PLCXD3 Missense_Mutation p.L88P 0.23 deleterious(0) probably_damaging(0.995) TCGA-80-5607-01 6 117121752 117121752 G T GPRC6A Missense_Mutation p.L515I 0.34 tolerated(0.19) benign(0.009) TCGA-80-5607-01 6 117121789 117121789 G A GPRC6A Silent p.I502I 0.40 TCGA-80-5607-01 6 117127639 117127639 C A GPRC6A Missense_Mutation p.G410V 0.33 deleterious(0.01) probably_damaging(0.944) TCGA-80-5607-01 6 137524823 137524823 C G IFNGR1 Splice_Site p.X183_splice 0.29 TCGA-80-5607-01 6 143081564 143081564 G C HIVEP2 Missense_Mutation p.P1954R 0.28 deleterious(0.01) benign(0.136) TCGA-80-5607-01 6 158330983 158330983 G A SNX9 Nonsense_Mutation p.W292* 0.34 TCGA-80-5607-01 6 161032594 161032594 G A LPA Missense_Mutation p.A868V 0.25 tolerated(0.22) possibly_damaging(0.661) TCGA-80-5607-01 6 28871717 28871717 T C TRIM27 3'UTR 0.25 TCGA-80-5607-01 6 29231659 29231659 G C XXbac-BPG308J9.3 RNA 0.13 TCGA-80-5607-01 6 31609167 31609167 G A BAG6 Silent p.I834I 0.21 TCGA-80-5607-01 6 31711739 31711739 C T MSH5 Silent p.A158A 0.07 TCGA-80-5607-01 6 31779455 31779455 C T HSPA1L Missense_Mutation p.E99K 0.12 tolerated_low_confidence(0.31) benign(0.075) TCGA-80-5607-01 6 39025255 39025255 C T GLP1R Silent p.F61F 0.16 TCGA-80-5607-01 6 43323114 43323114 G A ZNF318 Missense_Mutation p.S653L 0.24 possibly_damaging(0.504) TCGA-80-5607-01 6 99849436 99849437 - A PNISR Frame_Shift_Ins p.L466Ffs*12 0.24 TCGA-80-5607-01 7 128488927 128488927 G C FLNC Missense_Mutation p.M1606I 0.28 tolerated(0.29) benign(0.001) TCGA-80-5607-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.22 deleterious(0) probably_damaging(0.967) TCGA-80-5607-01 7 157475488 157475488 G C PTPRN2 Missense_Mutation p.Q644E 0.24 deleterious(0.01) benign(0.03) TCGA-80-5607-01 7 2296529 2296529 G A SNX8 Nonsense_Mutation p.Q422* 0.18 TCGA-80-5607-01 7 6189606 6189606 G A USP42 Missense_Mutation p.M593I 0.18 tolerated(0.13) benign(0.11) TCGA-80-5607-01 7 72159743 72159743 G A MIR4650-2 5'Flank 0.26 TCGA-80-5607-01 8 100548907 100548907 G C VPS13B Intron 0.16 TCGA-80-5607-01 8 124968250 124968250 G A FER1L6 Silent p.L4L 0.16 TCGA-80-5607-01 8 17169138 17169138 G C MTMR7 Nonsense_Mutation p.S328* 0.20 TCGA-80-5607-01 8 68150629 68150629 G A ARFGEF1 Missense_Mutation p.L1080F 0.23 tolerated(0.74) benign(0.005) TCGA-80-5607-01 8 73479925 73479925 C A KCNB2 5'UTR 0.12 TCGA-80-5607-01 8 86352077 86352077 G C CA3 Missense_Mutation p.K57N 0.18 tolerated(0.06) probably_damaging(0.998) TCGA-80-5607-01 8 97311998 97311998 A G PTDSS1 Missense_Mutation p.N226S 0.18 deleterious(0.02) benign(0.372) TCGA-80-5607-01 9 117808761 117808761 C A TNC Nonsense_Mutation p.E1685* 0.33 TCGA-80-5607-01 9 126214606 126214606 C T DENND1A Silent p.L416L 0.20 TCGA-80-5607-01 9 131344062 131344062 C T SPTAN1 Missense_Mutation p.A488V 0.19 deleterious(0.01) possibly_damaging(0.542) TCGA-80-5607-01 9 82187720 82187720 G T TLE4 Silent p.L5L 0.23 TCGA-80-5607-01 X 105280592 105280592 A T SERPINA7 Missense_Mutation p.L153H 0.24 deleterious(0) probably_damaging(0.991) TCGA-80-5607-01 X 119678408 119678408 C T CUL4B Silent p.E355E 0.23 TCGA-80-5607-01 X 129338838 129338838 C T ZNF280C 3'UTR 0.26 TCGA-80-5607-01 X 132159788 132159788 C T USP26 Missense_Mutation p.D821N 0.18 tolerated(0.09) possibly_damaging(0.677) TCGA-80-5607-01 X 148798344 148798344 C A MAGEA11 Missense_Mutation p.L400I 0.22 deleterious(0.05) possibly_damaging(0.908) TCGA-80-5607-01 X 148798377 148798377 C T MAGEA11 Missense_Mutation p.P411S 0.23 deleterious(0.01) possibly_damaging(0.829) TCGA-80-5607-01 X 151935914 151935914 C G MAGEA3 Missense_Mutation p.E85Q 0.25 tolerated(0.08) probably_damaging(0.982) TCGA-80-5607-01 X 49089816 49089816 C T CACNA1F 5'UTR 0.24 TCGA-80-5607-01 X 92965216 92965216 G C FAM133A 3'UTR 0.18 TCGA-80-5608-01 10 13779862 13779862 A G FRMD4A Silent p.D247D 0.16 TCGA-80-5608-01 10 18280116 18280116 G T SLC39A12 Missense_Mutation p.G436W 0.40 deleterious(0.01) probably_damaging(0.973) TCGA-80-5608-01 10 27703133 27703133 G T PTCHD3 Missense_Mutation p.P16H 0.19 tolerated_low_confidence(0.16) probably_damaging(0.95) TCGA-80-5608-01 10 55663078 55663078 T C PCDH15 Silent p.P1142P 0.07 TCGA-80-5608-01 11 102738033 102738033 G T MMP12 RNA 0.47 TCGA-80-5608-01 11 108236220 108236220 G C ATM Missense_Mutation p.W3052C 0.41 deleterious(0) probably_damaging(1) TCGA-80-5608-01 11 1217243 1217243 C G MUC5AC RNA 0.24 TCGA-80-5608-01 11 124266588 124266588 G A OR8B3 Silent p.F220F 0.21 TCGA-80-5608-01 11 128840287 128840287 C A ARHGAP32 Missense_Mutation p.M1593I 0.15 tolerated_low_confidence(0.28) probably_damaging(0.943) TCGA-80-5608-01 11 134253972 134253972 G T B3GAT1 Silent p.R75R 0.50 TCGA-80-5608-01 11 1908737 1908737 G T LSP1 Missense_Mutation p.A450S 0.09 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-80-5608-01 11 2324063 2324063 C T TSPAN32 Intron 0.23 TCGA-80-5608-01 11 28135017 28135017 C T METTL15 Missense_Mutation p.R46W 0.30 deleterious_low_confidence(0) benign(0.001) TCGA-80-5608-01 11 30033551 30033551 G TC KCNA4 Frame_Shift_Ins p.P226Tfs*4 0.20 TCGA-80-5608-01 11 5274611 5274611 C A HBG2 Missense_Mutation p.V114F 0.19 deleterious(0) probably_damaging(0.952) TCGA-80-5608-01 11 55703675 55703675 G A OR5I1 Silent p.L68L 0.17 TCGA-80-5608-01 11 55735562 55735562 C A OR10AG1 Silent p.V126V 0.20 TCGA-80-5608-01 11 55761571 55761571 G T OR5F1 Missense_Mutation p.F177L 0.25 deleterious(0) possibly_damaging(0.539) TCGA-80-5608-01 11 55904930 55904930 T C OR8J3 Missense_Mutation p.K89E 0.25 tolerated(0.38) benign(0.02) TCGA-80-5608-01 11 55999864 55999864 C G OR5T2 Missense_Mutation p.K266N 0.19 deleterious(0.02) benign(0.049) TCGA-80-5608-01 11 56258610 56258611 - T OR5M8 Frame_Shift_Ins p.M80Dfs*31 0.23 TCGA-80-5608-01 11 6291510 6291510 G T CCKBR Missense_Mutation p.G199V 0.39 tolerated(0.06) benign(0.216) TCGA-80-5608-01 11 6622684 6622684 T A RRP8 Silent p.P204P 0.30 TCGA-80-5608-01 11 75134888 75134888 G T KLHL35 Missense_Mutation p.L471M 0.36 deleterious(0.04) unknown(0) TCGA-80-5608-01 11 8435086 8435086 C T STK33 Missense_Mutation p.V434I 0.18 tolerated_low_confidence(0.28) benign(0.002) TCGA-80-5608-01 12 110925706 110925706 C T FAM216A Silent p.L221L 0.23 TCGA-80-5608-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.50 deleterious(0.02) possibly_damaging(0.773) TCGA-80-5608-01 12 26868257 26868257 C A ITPR2 Missense_Mutation p.S277I 0.09 deleterious(0) probably_damaging(0.999) TCGA-80-5608-01 12 57108218 57108218 C G NACA Silent p.A764A 0.25 TCGA-80-5608-01 12 63225927 63225927 G A PPM1H Silent p.P126P 0.27 TCGA-80-5608-01 12 63541299 63541299 C A AVPR1A Missense_Mutation p.C366F 0.26 deleterious(0.02) benign(0.249) TCGA-80-5608-01 13 42273408 42273408 T A VWA8 Splice_Site p.X1122_splice 0.56 TCGA-80-5608-01 14 106053607 106053607 G T IGHA2 Missense_Mutation p.N230K 0.28 deleterious(0.01) possibly_damaging(0.794) TCGA-80-5608-01 14 107083684 107083684 A G IGHV4-59 Translation_Start_Site p.M1? 0.07 deleterious(0) probably_damaging(0.99) TCGA-80-5608-01 14 59113448 59113448 G C DACT1 Missense_Mutation p.G703R 0.26 deleterious(0.01) probably_damaging(0.947) TCGA-80-5608-01 14 95081183 95081183 G A SERPINA3 Silent p.L135L 0.12 TCGA-80-5608-01 15 23890281 23890281 T A MAGEL2 Missense_Mutation p.E267V 0.37 deleterious(0) possibly_damaging(0.844) TCGA-80-5608-01 15 24924005 24924005 G C NPAP1 Silent p.L997L 0.06 TCGA-80-5608-01 15 35084734 35084734 T C ACTC1 Missense_Mutation p.N164S 0.30 deleterious_low_confidence(0.01) benign(0.001) TCGA-80-5608-01 15 50168722 50168722 T A ATP8B4 Splice_Site p.X928_splice 0.23 TCGA-80-5608-01 16 1995903 1995903 T A RPL3L Missense_Mutation p.N327I 0.27 deleterious(0.01) benign(0.209) TCGA-80-5608-01 16 20565132 20565132 G T ACSM2B Nonsense_Mutation p.S236* 0.28 TCGA-80-5608-01 16 2239268 2239268 C A CASKIN1 Missense_Mutation p.D153Y 0.38 probably_damaging(1) TCGA-80-5608-01 16 28606736 28606736 G C SULT1A2 Missense_Mutation p.H108Q 0.17 deleterious(0.01) probably_damaging(0.966) TCGA-80-5608-01 16 56928501 56928501 G T SLC12A3 Missense_Mutation p.K869N 0.31 deleterious(0) possibly_damaging(0.667) TCGA-80-5608-01 16 58590826 58590826 C A CNOT1 Missense_Mutation p.D802Y 0.11 tolerated(0.07) benign(0.32) TCGA-80-5608-01 16 61935283 61935283 C A CDH8 Missense_Mutation p.G116V 0.20 deleterious(0) probably_damaging(1) TCGA-80-5608-01 16 61935284 61935284 C A CDH8 Nonsense_Mutation p.G116* 0.20 TCGA-80-5608-01 16 71483658 71483658 C G ZNF23 Missense_Mutation p.Q90H 0.27 tolerated(0.09) benign(0.429) TCGA-80-5608-01 16 72159967 72159967 T A PMFBP1 Missense_Mutation p.E718V 0.15 deleterious(0.01) probably_damaging(0.982) TCGA-80-5608-01 17 10301845 10301845 G T MYH8 Missense_Mutation p.S1365Y 0.37 deleterious(0) probably_damaging(0.979) TCGA-80-5608-01 17 13400014 13400014 C G HS3ST3A1 Missense_Mutation p.V241L 0.20 deleterious(0.01) benign(0.429) TCGA-80-5608-01 17 17707136 17707136 T A RAI1 Missense_Mutation p.Y1878N 0.45 deleterious(0) probably_damaging(0.99) TCGA-80-5608-01 17 19186773 19186773 G A EPN2 Missense_Mutation p.R114Q 0.40 deleterious(0) probably_damaging(0.986) TCGA-80-5608-01 17 26695960 26695960 G T VTN Missense_Mutation p.N253K 0.12 deleterious(0.01) possibly_damaging(0.862) TCGA-80-5608-01 17 2996216 2996216 C A OR1D2 Silent p.R25R 0.20 TCGA-80-5608-01 17 37871593 37871593 G A ERBB2 Silent p.E401E 0.30 TCGA-80-5608-01 17 39036991 39036991 C A KRT20 Missense_Mutation p.V169L 0.40 deleterious(0.02) possibly_damaging(0.463) TCGA-80-5608-01 17 43545730 43545730 C A PLEKHM1 Missense_Mutation p.D385Y 0.21 deleterious(0.03) benign(0.044) TCGA-80-5608-01 17 43924304 43924304 A T SPPL2C Missense_Mutation p.M678L 0.13 tolerated_low_confidence(0.16) benign(0) TCGA-80-5608-01 17 47219396 47219396 G T B4GALNT2 Splice_Site p.X132_splice 0.34 TCGA-80-5608-01 18 19996316 19996316 G C CTAGE1 Missense_Mutation p.P487A 0.38 deleterious(0.01) probably_damaging(0.952) TCGA-80-5608-01 18 31323160 31323160 T A ASXL3 Silent p.A1116A 0.20 TCGA-80-5608-01 18 55247425 55247425 G C FECH Missense_Mutation p.S25C 0.06 tolerated_low_confidence(0.2) benign(0.002) TCGA-80-5608-01 18 56646334 56646334 G A ZNF532 Silent p.S1066S 0.16 TCGA-80-5608-01 18 64172507 64172507 G A CDH19 Missense_Mutation p.R621W 0.15 deleterious(0) possibly_damaging(0.872) TCGA-80-5608-01 18 70209322 70209322 G T CBLN2 Missense_Mutation p.P25Q 0.53 deleterious_low_confidence(0.01) benign(0.006) TCGA-80-5608-01 19 1207096 1207096 A T STK11 Nonsense_Mutation p.K62* 0.46 TCGA-80-5608-01 19 2396601 2396601 C A TMPRSS9 Silent p.T69T 0.38 TCGA-80-5608-01 19 44739842 44739842 C A ZNF227 Missense_Mutation p.A420D 0.16 tolerated(0.07) probably_damaging(0.974) TCGA-80-5608-01 19 49485991 49485991 C A GYS1 Silent p.R309R 0.33 TCGA-80-5608-01 19 53657034 53657035 TC A ZNF347 5'UTR 0.16 TCGA-80-5608-01 19 57133759 57133759 G C ZNF71 Silent p.S368S 0.36 TCGA-80-5608-01 19 57967590 57967590 G T VN1R1 Missense_Mutation p.Q89K 0.28 deleterious(0.01) probably_damaging(0.99) TCGA-80-5608-01 19 59028204 59028204 A C ZBTB45 Silent p.A279A 0.38 TCGA-80-5608-01 1 114255907 114255907 G A PHTF1 Silent p.C259C 0.38 TCGA-80-5608-01 1 151020753 151020753 C A C1orf56 Missense_Mutation p.Q144K 0.29 deleterious(0.01) possibly_damaging(0.486) TCGA-80-5608-01 1 152058248 152058248 C A TCHHL1 Missense_Mutation p.G637V 0.27 deleterious(0) probably_damaging(0.969) TCGA-80-5608-01 1 152382356 152382356 C T CRNN Missense_Mutation p.G401E 0.35 tolerated(0.15) benign(0.179) TCGA-80-5608-01 1 153655879 153655879 C A NPR1 Missense_Mutation p.Q431K 0.38 tolerated(1) benign(0) TCGA-80-5608-01 1 155838433 155838433 C A SYT11 Missense_Mutation p.Q238K 0.32 tolerated(0.08) benign(0.4) TCGA-80-5608-01 1 156897780 156897780 A T LRRC71 Missense_Mutation p.Q327L 0.31 tolerated(0.52) benign(0.008) TCGA-80-5608-01 1 158914690 158914690 G A PYHIN1 Missense_Mutation p.S406N 0.09 tolerated(0.77) benign(0.002) TCGA-80-5608-01 1 159284209 159284209 G T OR10J3 Missense_Mutation p.H81N 0.33 tolerated(0.25) benign(0.003) TCGA-80-5608-01 1 161092140 161092140 C T DEDD Missense_Mutation p.E252K 0.11 deleterious(0) probably_damaging(0.989) TCGA-80-5608-01 1 178426849 178426849 G T RASAL2 Missense_Mutation p.D808Y 0.29 deleterious(0) possibly_damaging(0.718) TCGA-80-5608-01 1 186064585 186064585 G T HMCN1 Missense_Mutation p.G3502V 0.28 probably_damaging(1) TCGA-80-5608-01 1 197069976 197069976 C A ASPM Missense_Mutation p.G2802V 0.29 tolerated(0.51) benign(0.003) TCGA-80-5608-01 1 198685924 198685924 C A PTPRC Missense_Mutation p.R469S 0.29 tolerated(0.1) probably_damaging(0.965) TCGA-80-5608-01 1 205033553 205033553 C T CNTN2 Silent p.A448A 0.27 TCGA-80-5608-01 1 205550012 205550012 G T MFSD4 Missense_Mutation p.R218L 0.40 deleterious(0.03) benign(0.107) TCGA-80-5608-01 1 21074149 21074149 C A HP1BP3 Splice_Site p.X381_splice 0.62 TCGA-80-5608-01 1 214832299 214832299 C T CENPF Silent p.S3023S 0.29 TCGA-80-5608-01 1 237777844 237777844 G T RYR2 Missense_Mutation p.A1806S 0.28 benign(0.013) TCGA-80-5608-01 1 237947592 237947592 G T RYR2 Nonsense_Mutation p.E4194* 0.26 TCGA-80-5608-01 1 247588388 247588388 G T NLRP3 Missense_Mutation p.G548V 0.33 deleterious(0.03) benign(0.071) TCGA-80-5608-01 1 248737440 248737440 A T OR2T34 Missense_Mutation p.C207S 0.05 deleterious(0.02) probably_damaging(0.998) TCGA-80-5608-01 1 249211989 249211989 C A PGBD2 Silent p.V402V 0.12 TCGA-80-5608-01 1 95615786 95615786 G A TMEM56 Missense_Mutation p.V90M 0.17 tolerated(0.15) benign(0.16) TCGA-80-5608-01 20 36640312 36640312 T A TTI1 Missense_Mutation p.Q636L 0.54 tolerated(0.57) benign(0.001) TCGA-80-5608-01 20 52192804 52192804 G A ZNF217 Silent p.A833A 0.47 TCGA-80-5608-01 20 56136641 56136641 C A PCK1 Silent p.G58G 0.08 TCGA-80-5608-01 20 56138656 56138656 G A PCK1 Silent p.K278K 0.15 TCGA-80-5608-01 20 60736500 60736500 G T SS18L1 Silent p.T80T 0.13 TCGA-80-5608-01 20 61512066 61512066 G T DIDO1 Missense_Mutation p.P1748T 0.15 possibly_damaging(0.743) TCGA-80-5608-01 21 10970031 10970031 C T TPTE Missense_Mutation p.E33K 0.21 tolerated(0.88) benign(0.001) TCGA-80-5608-01 21 11038789 11038789 C A BAGE2 RNA 0.10 TCGA-80-5608-01 21 11038832 11038832 T C BAGE2 RNA 0.11 TCGA-80-5608-01 21 34037310 34037310 G A SYNJ1 Silent p.N778N 0.24 TCGA-80-5608-01 21 36231782 36231782 C T RUNX1 Missense_Mutation p.R201Q 0.35 tolerated(0.05) possibly_damaging(0.636) TCGA-80-5608-01 22 23915496 23915496 C A IGLL1 Missense_Mutation p.G200V 0.25 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-80-5608-01 22 44592093 44592093 G T PARVG Missense_Mutation p.E214D 0.20 deleterious(0) benign(0.41) TCGA-80-5608-01 2 102955384 102955387 ACTC - IL1RL1 Frame_Shift_Del p.S51Kfs*21 0.08 TCGA-80-5608-01 2 106715213 106715213 T G UXS1 Missense_Mutation p.H334P 0.44 deleterious(0.03) probably_damaging(0.961) TCGA-80-5608-01 2 108487433 108487433 C A RGPD4 Silent p.P991P 0.33 TCGA-80-5608-01 2 125261952 125261952 C T CNTNAP5 Silent p.P381P 0.30 TCGA-80-5608-01 2 139322544 139322544 G T SPOPL Missense_Mutation p.G339W 0.18 tolerated_low_confidence(0.05) possibly_damaging(0.878) TCGA-80-5608-01 2 141081590 141081590 T C LRP1B Missense_Mutation p.Y4129C 0.25 possibly_damaging(0.759) TCGA-80-5608-01 2 151343252 151343252 T A RND3 Missense_Mutation p.E65V 0.11 deleterious(0.01) probably_damaging(0.981) TCGA-80-5608-01 2 157435653 157435653 G T GPD2 Missense_Mutation p.V646F 0.27 tolerated(0.07) benign(0.092) TCGA-80-5608-01 2 176995628 176995628 G C HOXD8 Missense_Mutation p.Q178H 0.28 deleterious(0.04) benign(0.1) TCGA-80-5608-01 2 182423393 182423393 G T CERKL Silent p.A266A 0.27 TCGA-80-5608-01 2 190569878 190569878 A G ANKAR Missense_Mutation p.Y613C 0.30 deleterious(0.02) possibly_damaging(0.663) TCGA-80-5608-01 2 196774919 196774919 T A DNAH7 Missense_Mutation p.R1312S 0.31 deleterious(0) probably_damaging(0.928) TCGA-80-5608-01 2 212248358 212248358 G T ERBB4 Missense_Mutation p.H1303Q 0.26 tolerated_low_confidence(0.88) benign(0.01) TCGA-80-5608-01 2 216964934 216964934 A G TMEM169 Missense_Mutation p.Y188C 0.34 deleterious(0) probably_damaging(1) TCGA-80-5608-01 2 228996758 228996758 G A SPHKAP Nonsense_Mutation p.Q26* 0.28 TCGA-80-5608-01 2 234546000 234546000 C A UGT1A10 Missense_Mutation p.H278N 0.26 tolerated(0.4) benign(0.026) TCGA-80-5608-01 2 40342578 40342578 G T SLC8A1 Missense_Mutation p.L913I 0.20 tolerated(0.38) benign(0.267) TCGA-80-5608-01 2 64208813 64208813 T C VPS54 Silent p.E115E 0.31 TCGA-80-5608-01 2 73653584 73653584 G T ALMS1 Missense_Mutation p.G414V 0.28 possibly_damaging(0.877) TCGA-80-5608-01 2 8940623 8940623 C A KIDINS220 Silent p.G269G 0.36 TCGA-80-5608-01 2 90060957 90060957 G T IGKV6D-21 Missense_Mutation p.A102S 0.13 tolerated(0.11) benign(0.105) TCGA-80-5608-01 2 99448925 99448925 C A KIAA1211L Silent p.G142G 0.21 TCGA-80-5608-01 3 100373882 100373882 C T GPR128 Missense_Mutation p.A528V 0.14 tolerated(0.47) benign(0.061) TCGA-80-5608-01 3 114014445 114014445 G A TIGIT Missense_Mutation p.G39S 0.41 tolerated(0.27) benign(0.145) TCGA-80-5608-01 3 123457878 123457878 G A MYLK Missense_Mutation p.R152C 0.26 deleterious(0) benign(0.38) TCGA-80-5608-01 3 133119189 133119189 C T BFSP2 Silent p.L88L 0.51 TCGA-80-5608-01 3 195022341 195022341 G C ACAP2 Missense_Mutation p.S453C 0.43 deleterious(0) probably_damaging(1) TCGA-80-5608-01 3 53752354 53752354 T A CACNA1D Missense_Mutation p.S473T 0.40 deleterious(0.03) probably_damaging(0.99) TCGA-80-5608-01 3 97596628 97596628 A T CRYBG3 Missense_Mutation p.Y249F 0.52 tolerated(0.48) benign(0.002) TCGA-80-5608-01 4 3371980 3371980 G T RGS12 Intron 0.38 TCGA-80-5608-01 4 40356304 40356304 G T CHRNA9 Missense_Mutation p.D403Y 0.33 tolerated(0.05) benign(0.008) TCGA-80-5608-01 4 41016079 41016079 T C APBB2 Missense_Mutation p.N119S 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-80-5608-01 4 55594049 55594049 T C KIT Missense_Mutation p.I612T 0.27 tolerated(0.47) benign(0.224) TCGA-80-5608-01 4 628465 628465 G T PDE6B Splice_Site p.X157_splice 0.39 TCGA-80-5608-01 4 66213797 66213797 G T EPHA5 Missense_Mutation p.P878H 0.31 deleterious(0) probably_damaging(0.999) TCGA-80-5608-01 4 9784934 9784934 C T DRD5 Silent p.N427N 0.12 TCGA-80-5608-01 5 140167779 140167779 G A PCDHA1 Missense_Mutation p.R635H 0.33 deleterious_low_confidence(0) possibly_damaging(0.722) TCGA-80-5608-01 5 140389282 140389282 C A PCDHAC1 Nonsense_Mutation p.Y884* 0.28 TCGA-80-5608-01 5 140557928 140557928 C A PCDHB8 Missense_Mutation p.L105I 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.791) TCGA-80-5608-01 5 140725707 140725707 G A PCDHGA3 Missense_Mutation p.V703I 0.15 tolerated_low_confidence(0.19) benign(0.042) TCGA-80-5608-01 5 149901013 149901013 G T NDST1 Missense_Mutation p.R66L 0.24 tolerated(0.13) benign(0.027) TCGA-80-5608-01 5 21752007 21752007 C A CDH12 Nonsense_Mutation p.E742* 0.26 TCGA-80-5608-01 5 24509754 24509754 C A CDH10 Missense_Mutation p.V393F 0.33 deleterious(0) benign(0.38) TCGA-80-5608-01 5 40959695 40959695 G T C7 Missense_Mutation p.C545F 0.26 deleterious(0) probably_damaging(0.996) TCGA-80-5608-01 5 72419515 72419515 G T TMEM171 Missense_Mutation p.E105D 0.28 tolerated(0.11) possibly_damaging(0.905) TCGA-80-5608-01 6 126080624 126080624 G A HEY2 Silent p.T230T 0.15 TCGA-80-5608-01 6 152651835 152651835 T A SYNE1 Missense_Mutation p.K4662M 0.23 probably_damaging(0.991) TCGA-80-5608-01 6 161020611 161020611 C G LPA Missense_Mutation p.V1070L 0.37 tolerated(0.35) possibly_damaging(0.877) TCGA-80-5608-01 6 170068177 170068177 C G WDR27 Silent p.R187R 0.25 TCGA-80-5608-01 6 26197336 26197336 G A HIST1H3D Missense_Mutation p.A48V 0.20 deleterious_low_confidence(0) benign(0.155) TCGA-80-5608-01 6 29577119 29577119 C A GABBR1 Missense_Mutation p.K582N 0.31 tolerated(0.3) benign(0.021) TCGA-80-5608-01 6 36710132 36710132 C A CPNE5 Silent p.P565P 0.33 TCGA-80-5608-01 6 43251598 43251598 C A TTBK1 Silent p.I1040I 0.21 TCGA-80-5608-01 6 53365045 53365045 C A GCLC Missense_Mutation p.K527N 0.30 tolerated(0.06) possibly_damaging(0.6) TCGA-80-5608-01 6 7231254 7231254 A T RREB1 Silent p.A974A 0.31 TCGA-80-5608-01 6 74073619 74073619 G A KHDC3L 3'UTR 0.19 TCGA-80-5608-01 6 90577242 90577242 G T CASP8AP2 RNA 0.47 TCGA-80-5608-01 7 107315451 107315451 G T SLC26A4 Missense_Mutation p.G221V 0.32 deleterious(0.03) probably_damaging(0.998) TCGA-80-5608-01 7 107626468 107626468 C G LAMB1 Missense_Mutation p.Q225H 0.15 deleterious(0) probably_damaging(0.98) TCGA-80-5608-01 7 107732132 107732132 G A LAMB4 Missense_Mutation p.P547L 0.17 deleterious(0) probably_damaging(0.948) TCGA-80-5608-01 7 142460344 142460344 G C PRSS1 Missense_Mutation p.A173P 0.10 tolerated(0.13) benign(0.201) TCGA-80-5608-01 7 142572292 142572292 G C TRPV6 Missense_Mutation p.F468L 0.11 deleterious(0.03) possibly_damaging(0.791) TCGA-80-5608-01 7 143054005 143054005 C A FAM131B Missense_Mutation p.A241S 0.42 tolerated(0.06) possibly_damaging(0.716) TCGA-80-5608-01 7 150730846 150730846 C A ABCB8 Missense_Mutation p.L84M 0.12 deleterious_low_confidence(0.02) possibly_damaging(0.674) TCGA-80-5608-01 7 150737715 150737720 GCTTCA - ABCB8 In_Frame_Del p.F462_S463del 0.14 TCGA-80-5608-01 7 42005353 42005353 T A GLI3 Silent p.A1106A 0.20 TCGA-80-5608-01 7 43601540 43601540 G A HECW1 3'UTR 0.20 TCGA-80-5608-01 7 57529325 57529325 C G ZNF716 Silent p.G386G 0.32 TCGA-80-5608-01 8 116426987 116426987 A T TRPS1 Missense_Mutation p.I1050N 0.08 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-80-5608-01 8 116632147 116632147 C A TRPS1 Missense_Mutation p.D60Y 0.58 deleterious_low_confidence(0) possibly_damaging(0.89) TCGA-80-5608-01 8 139255183 139255183 A G FAM135B Splice_Site p.X223_splice 0.12 TCGA-80-5608-01 8 36766902 36766902 C A KCNU1 Missense_Mutation p.A727D 0.55 deleterious(0.01) benign(0.347) TCGA-80-5608-01 8 52321470 52321470 C G PXDNL Missense_Mutation p.R905P 0.16 tolerated(0.31) benign(0.049) TCGA-80-5608-01 8 56911984 56911984 G C LYN Missense_Mutation p.K404N 0.07 deleterious(0.01) probably_damaging(0.974) TCGA-80-5608-01 8 72970051 72970051 C A TRPA1 Nonsense_Mutation p.G332* 0.50 TCGA-80-5608-01 9 104238992 104238993 AG T TMEM246 Frame_Shift_Del p.L128Ifs*23 0.17 TCGA-80-5608-01 9 119977013 119977013 G T ASTN2 Silent p.L213L 0.23 TCGA-80-5608-01 9 120053696 120053696 G T ASTN2 Missense_Mutation p.S180Y 0.23 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-80-5608-01 9 125618088 125618088 C A RC3H2 Missense_Mutation p.G842C 0.19 deleterious(0) probably_damaging(0.997) TCGA-80-5608-01 9 136135254 136135254 G A RP11-430N14.4 5'Flank 0.30 TCGA-80-5608-01 9 8486234 8486234 G C PTPRD Silent p.G861G 0.52 TCGA-80-5608-01 X 100617598 100617598 C A BTK Missense_Mutation p.Q157H 0.37 deleterious(0.01) probably_damaging(0.997) TCGA-80-5608-01 X 100617612 100617612 G A BTK Missense_Mutation p.L153F 0.31 deleterious(0.02) probably_damaging(0.93) TCGA-80-5608-01 X 105449717 105449717 A G MUM1L1 Missense_Mutation p.N98D 0.52 tolerated(0.1) benign(0.015) TCGA-80-5608-01 X 108619377 108619377 G T GUCY2F Missense_Mutation p.T1057N 0.04 deleterious(0) probably_damaging(0.998) TCGA-80-5608-01 X 108904811 108904811 G T ACSL4 Missense_Mutation p.A590D 0.08 deleterious(0) possibly_damaging(0.501) TCGA-80-5608-01 X 123587225 123587225 G T TENM1 Missense_Mutation p.Q1356K 0.41 tolerated(0.17) benign(0.005) TCGA-80-5608-01 X 125685331 125685331 A T DCAF12L1 Missense_Mutation p.F421I 0.09 deleterious(0.04) benign(0.019) TCGA-80-5608-01 X 148048494 148048494 A G AFF2 Missense_Mutation p.I1030V 0.06 tolerated(0.49) probably_damaging(0.97) TCGA-80-5608-01 X 15657827 15657827 C G TMEM27 Missense_Mutation p.E124Q 0.38 tolerated(0.33) benign(0.144) TCGA-80-5608-01 X 70444128 70444128 A T GJB1 Missense_Mutation p.T191S 0.11 deleterious(0.03) probably_damaging(0.968) TCGA-80-5608-01 X 70595136 70595136 G T TAF1 Missense_Mutation p.V178L 0.14 tolerated(0.15) benign(0.038) TCGA-80-5608-01 X 8434017 8434017 G C VCX3B Missense_Mutation p.E112Q 0.32 tolerated(0.21) unknown(0) TCGA-80-5611-01 10 102987012 102987012 G T LBX1 3'UTR 0.42 TCGA-80-5611-01 10 103988910 103988910 G C ELOVL3 Missense_Mutation p.W238C 0.61 deleterious(0.01) probably_damaging(0.989) TCGA-80-5611-01 10 124335998 124335998 T G DMBT1 Missense_Mutation p.W123G 0.27 deleterious(0) probably_damaging(0.999) TCGA-80-5611-01 10 34663923 34663923 C A PARD3 Missense_Mutation p.G516V 0.30 deleterious(0) probably_damaging(0.966) TCGA-80-5611-01 10 43291968 43291968 C G BMS1 Missense_Mutation p.R426G 0.37 deleterious(0) probably_damaging(0.998) TCGA-80-5611-01 10 75520491 75520491 G T SEC24C Missense_Mutation p.G291C 0.58 deleterious(0) probably_damaging(0.982) TCGA-80-5611-01 10 7657947 7657947 G T ITIH5 Missense_Mutation p.Q313K 0.33 deleterious(0.02) probably_damaging(0.947) TCGA-80-5611-01 10 95719536 95719536 C G PIPSL RNA 0.21 TCGA-80-5611-01 11 103060406 103060406 C G DYNC2H1 Missense_Mutation p.P2433R 0.24 probably_damaging(0.991) TCGA-80-5611-01 11 106558443 106558443 C A GUCY1A2 Silent p.R708R 0.19 TCGA-80-5611-01 11 1104063 1104063 G T MUC2 Missense_Mutation p.A2752S 0.30 unknown(0) TCGA-80-5611-01 11 123810475 123810475 C - OR4D5 Frame_Shift_Del p.D52Tfs*47 0.16 TCGA-80-5611-01 11 134054882 134054882 T G NCAPD3 Missense_Mutation p.N751H 0.05 deleterious(0.01) benign(0.103) TCGA-80-5611-01 11 14512211 14512211 A G COPB1 Missense_Mutation p.L169P 0.26 deleterious(0) probably_damaging(1) TCGA-80-5611-01 11 14666084 14666084 C A PDE3B Missense_Mutation p.L155M 0.46 deleterious(0) possibly_damaging(0.894) TCGA-80-5611-01 11 1580240 1580240 C T DUSP8 Missense_Mutation p.G139D 0.12 deleterious(0.01) possibly_damaging(0.82) TCGA-80-5611-01 11 30930585 30930585 G T DCDC1 Missense_Mutation p.H1276N 0.23 deleterious(0.04) benign(0.216) TCGA-80-5611-01 11 47179382 47179382 T A C11orf49 Silent p.L222L 0.21 TCGA-80-5611-01 11 5080543 5080543 A - OR52E2 Frame_Shift_Del p.F105Lfs*41 0.24 TCGA-80-5611-01 11 55135509 55135509 G A OR4A15 Silent p.E50E 0.40 TCGA-80-5611-01 11 55563785 55563785 A T OR5D14 Missense_Mutation p.I252F 0.16 deleterious(0.02) benign(0.33) TCGA-80-5611-01 11 58125914 58125914 A G OR5B17 Missense_Mutation p.L210P 0.11 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-80-5611-01 11 58711090 58711090 G A GLYATL1 Silent p.L33L 0.48 TCGA-80-5611-01 11 65729186 65729186 C A SART1 5'UTR 0.35 TCGA-80-5611-01 11 72465899 72465899 G A STARD10 3'UTR 0.35 TCGA-80-5611-01 11 76924924 76924924 C T MYO7A Missense_Mutation p.P2153L 0.31 deleterious(0.02) probably_damaging(0.997) TCGA-80-5611-01 11 78413148 78413148 A G TENM4 Missense_Mutation p.S1504P 0.12 deleterious(0.03) possibly_damaging(0.514) TCGA-80-5611-01 11 89774426 89774426 G C TRIM49C Missense_Mutation p.G356A 0.24 deleterious(0) probably_damaging(1) TCGA-80-5611-01 11 93822027 93822027 C A HEPHL1 Nonsense_Mutation p.Y729* 0.17 TCGA-80-5611-01 12 101514344 101514344 T A ANO4 Missense_Mutation p.Y838N 0.36 deleterious(0.02) possibly_damaging(0.844) TCGA-80-5611-01 12 123801854 123801854 G C SBNO1 Missense_Mutation p.A950G 0.21 deleterious(0) probably_damaging(0.983) TCGA-80-5611-01 12 41463902 41463902 A G CNTN1 3'UTR 0.23 TCGA-80-5611-01 12 52281933 52281933 G C ANKRD33 5'UTR 0.17 TCGA-80-5611-01 12 56514815 56514815 C T ZC3H10 Missense_Mutation p.R157C 0.20 deleterious(0) probably_damaging(0.978) TCGA-80-5611-01 12 64202478 64202478 A T TMEM5 Missense_Mutation p.E313V 0.24 deleterious(0.02) benign(0.114) TCGA-80-5611-01 12 70149292 70149292 C T RAB3IP Missense_Mutation p.T51I 0.23 deleterious_low_confidence(0) possibly_damaging(0.71) TCGA-80-5611-01 12 72050619 72050619 T C ZFC3H1 Intron 0.41 TCGA-80-5611-01 13 100190023 100190023 A G TM9SF2 Missense_Mutation p.I208V 0.43 tolerated(0.26) benign(0.012) TCGA-80-5611-01 13 113773001 113773001 C A F7 Silent p.L360L 0.38 TCGA-80-5611-01 13 39917907 39917907 C A LHFP 3'UTR 0.50 TCGA-80-5611-01 13 41518040 41518040 C A ELF1 Missense_Mutation p.R184L 0.10 deleterious(0) probably_damaging(0.998) TCGA-80-5611-01 13 42440148 42440148 T C VWA8 Missense_Mutation p.S413G 0.80 tolerated(0.48) benign(0) TCGA-80-5611-01 14 100118841 100118842 AG C HHIPL1 Frame_Shift_Del p.K179Tfs*55 0.30 TCGA-80-5611-01 14 103931921 103931921 A G MARK3 Missense_Mutation p.M190V 0.35 deleterious(0.02) probably_damaging(0.968) TCGA-80-5611-01 14 105410751 105410751 C A AHNAK2 Silent p.G3679G 0.32 TCGA-80-5611-01 14 106091458 106091458 C T IGHG4 Missense_Mutation p.V146M 0.16 tolerated(0.09) possibly_damaging(0.49) TCGA-80-5611-01 14 24530760 24530760 C T LRRC16B Missense_Mutation p.R787W 0.07 deleterious(0) probably_damaging(0.922) TCGA-80-5611-01 14 44975731 44975731 C A FSCB Nonsense_Mutation p.E154* 0.26 TCGA-80-5611-01 14 44975732 44975732 C G FSCB Missense_Mutation p.K153N 0.27 deleterious(0.03) possibly_damaging(0.699) TCGA-80-5611-01 14 57268456 57268456 C T OTX2 Silent p.L297L 0.38 TCGA-80-5611-01 14 60574588 60574588 G A PCNXL4 Intron 0.36 TCGA-80-5611-01 14 65208725 65208725 G A PLEKHG3 Silent p.K774K 0.13 TCGA-80-5611-01 14 74428033 74428033 T A COQ6 Nonsense_Mutation p.L350* 0.40 TCGA-80-5611-01 14 77732490 77732490 C - NGB 3'UTR 0.35 TCGA-80-5611-01 14 79423666 79423666 A G NRXN3 Missense_Mutation p.K413R 0.31 tolerated(0.06) probably_damaging(0.941) TCGA-80-5611-01 15 54630577 54630578 CC A UNC13C Frame_Shift_Del p.P1535Tfs*8 0.19 TCGA-80-5611-01 15 89386810 89386810 G A ACAN Missense_Mutation p.V328I 0.53 deleterious(0) unknown(0) TCGA-80-5611-01 16 1270924 1270924 G A CACNA1H Missense_Mutation p.C2331Y 0.19 deleterious_low_confidence(0) benign(0.086) TCGA-80-5611-01 16 1810016 1810016 A C MAPK8IP3 Missense_Mutation p.K434T 0.14 deleterious(0) probably_damaging(0.94) TCGA-80-5611-01 16 30732065 30732065 C T SRCAP Missense_Mutation p.R1007W 0.21 unknown(0) TCGA-80-5611-01 16 30767768 30767768 G T PHKG2 Missense_Mutation p.R243L 0.31 deleterious(0) probably_damaging(0.998) TCGA-80-5611-01 16 55523613 55523613 T G MMP2 Missense_Mutation p.F353V 0.21 deleterious(0) possibly_damaging(0.795) TCGA-80-5611-01 16 55523626 55523626 G C MMP2 Missense_Mutation p.G357A 0.19 deleterious(0) probably_damaging(0.925) TCGA-80-5611-01 16 56553688 56553688 C A BBS2 Silent p.P29P 0.60 TCGA-80-5611-01 16 570480 570480 C T RAB11FIP3 Nonsense_Mutation p.Q680* 0.24 TCGA-80-5611-01 16 66949248 66949248 C T CDH16 Missense_Mutation p.R153Q 0.58 tolerated(0.51) benign(0.003) TCGA-80-5611-01 16 67515078 67515078 G C ATP6V0D1 5'UTR 0.42 TCGA-80-5611-01 16 75665654 75665654 C T KARS Missense_Mutation p.E367K 0.04 deleterious(0) probably_damaging(1) TCGA-80-5611-01 16 87678370 87678370 C T JPH3 Missense_Mutation p.R297C 0.65 deleterious(0) probably_damaging(1) TCGA-80-5611-01 16 88945809 88945809 C T CBFA2T3 Missense_Mutation p.D511N 0.14 tolerated(0.08) possibly_damaging(0.824) TCGA-80-5611-01 17 27062387 27062387 G A NEK8 Missense_Mutation p.A206T 0.15 tolerated(0.19) benign(0.115) TCGA-80-5611-01 17 27240044 27240044 T A PHF12 Silent p.P515P 0.26 TCGA-80-5611-01 17 27425147 27425147 A T MYO18A Silent p.A1322A 0.26 TCGA-80-5611-01 17 29226112 29226112 A G TEFM 3'UTR 0.11 TCGA-80-5611-01 17 34391745 34391745 A G CCL18 Missense_Mutation p.M15V 0.30 tolerated(0.6) benign(0) TCGA-80-5611-01 17 34842538 34842538 A G ZNHIT3 5'UTR 0.26 TCGA-80-5611-01 17 3592814 3592814 C A P2RX5 Missense_Mutation p.G242V 0.35 deleterious(0) probably_damaging(0.998) TCGA-80-5611-01 17 38253497 38253497 G A NR1D1 Missense_Mutation p.P64L 0.37 deleterious(0.05) benign(0.152) TCGA-80-5611-01 17 38508718 38508718 G T RARA Missense_Mutation p.D256Y 0.21 deleterious(0) probably_damaging(1) TCGA-80-5611-01 17 39673396 39673396 T G KRT15 Missense_Mutation p.N174H 0.22 deleterious(0) probably_damaging(0.996) TCGA-80-5611-01 17 41256153 41256153 C G BRCA1 Missense_Mutation p.E143Q 0.09 tolerated(0.06) benign(0.008) TCGA-80-5611-01 17 42083115 42083115 C T NAGS Silent p.A179A 0.36 TCGA-80-5611-01 17 62271159 62271159 T A TEX2 Missense_Mutation p.M646L 0.22 tolerated(0.08) benign(0.062) TCGA-80-5611-01 17 72356359 72356359 C A BTBD17 Missense_Mutation p.E37D 0.16 tolerated_low_confidence(0.59) benign(0.004) TCGA-80-5611-01 17 74734527 74734527 G A MFSD11 Silent p.V31V 0.30 TCGA-80-5611-01 17 76823389 76823389 C A USP36 Silent p.A209A 0.24 TCGA-80-5611-01 18 43479488 43479488 C T EPG5 Missense_Mutation p.E1564K 0.21 deleterious(0.02) probably_damaging(0.953) TCGA-80-5611-01 18 72180861 72180861 G T CNDP2 Silent p.T270T 0.20 TCGA-80-5611-01 18 72250894 72250894 G T CNDP1 Silent p.P469P 0.19 TCGA-80-5611-01 19 11118587 11118587 G T SMARCA4 Nonsense_Mutation p.E671* 0.33 TCGA-80-5611-01 19 12739912 12739912 C G ZNF791 Silent p.P523P 0.50 TCGA-80-5611-01 19 22952001 22952001 C T ZNF99 Silent p.L43L 0.23 TCGA-80-5611-01 19 3551133 3551133 C T MFSD12 Missense_Mutation p.A120T 0.43 benign(0.055) TCGA-80-5611-01 19 37838716 37838716 G A HKR1 Silent p.L85L 0.52 TCGA-80-5611-01 19 39013721 39013721 T G RYR1 Missense_Mutation p.V3438G 0.29 benign(0) TCGA-80-5611-01 19 39219684 39219684 A T ACTN4 Missense_Mutation p.S823C 0.59 deleterious(0.01) benign(0.417) TCGA-80-5611-01 19 43762450 43762450 G C PSG9 Missense_Mutation p.Q383E 0.15 tolerated(0.44) benign(0.012) TCGA-80-5611-01 19 47424388 47424388 C T ARHGAP35 Missense_Mutation p.S819F 0.57 deleterious(0) probably_damaging(0.999) TCGA-80-5611-01 19 49004582 49004582 C T LMTK3 Missense_Mutation p.G349E 0.48 probably_damaging(0.99) TCGA-80-5611-01 19 49131413 49131430 CTCCAGGTGCTGAACGGG - SPHK2 Splice_Site p.X253_splice 0.60 TCGA-80-5611-01 19 51380187 51380187 G C KLK2 Missense_Mutation p.A185P 0.70 tolerated(0.19) possibly_damaging(0.71) TCGA-80-5611-01 19 55452944 55452944 C T NLRP7 Missense_Mutation p.V46M 0.21 tolerated(0.22) possibly_damaging(0.656) TCGA-80-5611-01 19 7622061 7622061 G T PNPLA6 Silent p.L1106L 0.42 TCGA-80-5611-01 19 8389370 8389370 A T KANK3 Missense_Mutation p.L782Q 0.50 deleterious(0) possibly_damaging(0.883) TCGA-80-5611-01 1 119929411 119929411 T C HAO2 Missense_Mutation p.V243A 0.20 deleterious(0) probably_damaging(0.999) TCGA-80-5611-01 1 145075778 145075778 T A PDE4DIP Missense_Mutation p.T29S 0.06 tolerated_low_confidence(0.09) benign(0.025) TCGA-80-5611-01 1 154919276 154919276 G C PBXIP1 Missense_Mutation p.Q292E 0.09 deleterious(0) probably_damaging(0.996) TCGA-80-5611-01 1 155239366 155239366 C G CLK2 Missense_Mutation p.E104D 0.20 tolerated(0.49) benign(0.15) TCGA-80-5611-01 1 155255611 155255611 C T HCN3 Missense_Mutation p.R445C 0.09 deleterious(0.01) possibly_damaging(0.772) TCGA-80-5611-01 1 156290753 156290753 G C CCT3 Silent p.T162T 0.25 TCGA-80-5611-01 1 158624414 158624414 C A SPTA1 Missense_Mutation p.S1008I 0.11 deleterious(0) probably_damaging(0.999) TCGA-80-5611-01 1 158627368 158627368 G - SPTA1 Frame_Shift_Del p.Q902Sfs*21 0.19 TCGA-80-5611-01 1 158908958 158908958 C A PYHIN1 Missense_Mutation p.A167D 0.07 deleterious(0.01) probably_damaging(0.991) TCGA-80-5611-01 1 1688055 1688055 C G NADK Missense_Mutation p.C274S 0.15 tolerated(0.39) benign(0.036) TCGA-80-5611-01 1 16935131 16935131 G A NBPF1 5'UTR 0.16 TCGA-80-5611-01 1 171509216 171509216 G A PRRC2C Missense_Mutation p.A869T 0.28 unknown(0) TCGA-80-5611-01 1 176903371 176903371 C G ASTN1 Missense_Mutation p.G863A 0.33 deleterious(0) probably_damaging(0.999) TCGA-80-5611-01 1 183102584 183102584 G A LAMC1 Missense_Mutation p.A1250T 0.04 tolerated(0.09) probably_damaging(0.998) TCGA-80-5611-01 1 232534998 232534998 G T SIPA1L2 Missense_Mutation p.L1682I 0.23 deleterious(0) probably_damaging(0.997) TCGA-80-5611-01 1 235969480 235969480 C T LYST Missense_Mutation p.G986S 0.09 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-80-5611-01 1 26510616 26510616 G A CNKSR1 Missense_Mutation p.A304T 0.62 tolerated(0.52) benign(0.002) TCGA-80-5611-01 1 28167669 28167669 G A PPP1R8 Missense_Mutation p.G139E 0.15 tolerated(0.53) benign(0.013) TCGA-80-5611-01 1 28815703 28815703 A G PHACTR4 Silent p.T604T 0.47 TCGA-80-5611-01 1 33832751 33832751 A T PHC2 Silent p.V314V 0.15 TCGA-80-5611-01 1 65855004 65855004 T C DNAJC6 Missense_Mutation p.V420A 0.34 deleterious(0) benign(0.378) TCGA-80-5611-01 1 70502175 70502175 G A LRRC7 Missense_Mutation p.S681N 0.30 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-80-5611-01 1 74671569 74671569 G A FPGT 3'UTR 0.23 TCGA-80-5611-01 1 7737753 7737753 C A CAMTA1 Silent p.P958P 0.11 TCGA-80-5611-01 1 91851286 91851286 T C HFM1 Silent p.K200K 0.45 TCGA-80-5611-01 20 18794374 18794374 G C SCP2D1 5'UTR 0.64 TCGA-80-5611-01 20 21494245 21494245 G C NKX2-2 Silent p.T21T 0.30 TCGA-80-5611-01 20 2464228 2464228 G A ZNF343 Missense_Mutation p.S460F 0.32 deleterious(0) probably_damaging(0.985) TCGA-80-5611-01 20 25667036 25667036 G T ZNF337 Silent p.A6A 0.31 TCGA-80-5611-01 20 40126136 40126136 T G CHD6 Missense_Mutation p.Y327S 0.35 deleterious(0) probably_damaging(0.999) TCGA-80-5611-01 20 4713134 4713134 G C PRNT Silent p.T63T 0.19 TCGA-80-5611-01 20 55204644 55204644 G C TFAP2C Missense_Mutation p.C15S 0.11 tolerated(0.4) benign(0) TCGA-80-5611-01 20 60885352 60885352 G A LAMA5 Missense_Mutation p.T3539I 0.34 benign(0.007) TCGA-80-5611-01 20 7963206 7963206 T G TMX4 Missense_Mutation p.K248Q 0.38 tolerated(0.16) possibly_damaging(0.889) TCGA-80-5611-01 21 11058219 11058219 C A BAGE2 RNA 0.08 TCGA-80-5611-01 21 47404299 47404299 G C COL6A1 Missense_Mutation p.S115T 0.45 tolerated(0.64) unknown(0) TCGA-80-5611-01 22 25151777 25151777 T C PIWIL3 Silent p.L222L 0.18 TCGA-80-5611-01 22 26875276 26875276 T C HPS4 Silent p.E29E 0.26 TCGA-80-5611-01 2 105924597 105924597 C - TGFBRAP1 Frame_Shift_Del p.R54Sfs*26 0.24 TCGA-80-5611-01 2 107460008 107460008 G T ST6GAL2 Missense_Mutation p.S142R 0.19 benign(0.004) TCGA-80-5611-01 2 132010488 132010488 C T POTEE Intron 0.14 TCGA-80-5611-01 2 141812775 141812775 G A LRP1B Missense_Mutation p.H488Y 0.06 benign(0.152) TCGA-80-5611-01 2 145156993 145156993 T A ZEB2 Missense_Mutation p.K587N 0.36 tolerated(0.11) probably_damaging(0.998) TCGA-80-5611-01 2 152300099 152300099 C T RIF1 Missense_Mutation p.P621L 0.37 deleterious(0.01) possibly_damaging(0.566) TCGA-80-5611-01 2 166848264 166848264 G T SCN1A Missense_Mutation p.L1841M 0.41 deleterious(0.03) benign(0.015) TCGA-80-5611-01 2 179585221 179585221 A T TTN Missense_Mutation p.D7756E 0.18 TCGA-80-5611-01 2 179598223 179598223 C A TTN Missense_Mutation p.R5266L 0.20 TCGA-80-5611-01 2 197534559 197534559 T C CCDC150 Missense_Mutation p.S299P 0.21 deleterious(0.01) possibly_damaging(0.719) TCGA-80-5611-01 2 200213524 200213524 A G SATB2 Missense_Mutation p.V358A 0.40 tolerated(0.3) benign(0.01) TCGA-80-5611-01 2 207569584 207569584 G C DYTN Missense_Mutation p.L156V 0.39 deleterious(0) probably_damaging(0.999) TCGA-80-5611-01 2 209218638 209218638 G T PIKFYVE Missense_Mutation p.G1954V 0.41 deleterious(0) probably_damaging(1) TCGA-80-5611-01 2 216262478 216262478 C A FN1 Nonsense_Mutation p.E1148* 0.10 TCGA-80-5611-01 2 229890361 229890361 G A PID1 Missense_Mutation p.S245F 0.17 deleterious(0.01) probably_damaging(0.991) TCGA-80-5611-01 2 234602290 234602290 G C UGT1A6 Missense_Mutation p.V214L 0.16 tolerated(0.37) benign(0.345) TCGA-80-5611-01 2 25044490 25044490 T A ADCY3 Missense_Mutation p.E1008V 0.19 tolerated(0.19) benign(0.224) TCGA-80-5611-01 2 43779441 43779441 T C THADA Silent p.V904V 0.45 TCGA-80-5611-01 2 44586775 44586775 T A PREPL Missense_Mutation p.H27L 0.29 tolerated_low_confidence(0.65) benign(0.008) TCGA-80-5611-01 2 63176253 63176253 A G EHBP1 Missense_Mutation p.R793G 0.08 tolerated_low_confidence(0.16) benign(0.017) TCGA-80-5611-01 2 71377048 71377048 T C MPHOSPH10 Missense_Mutation p.L650S 0.19 deleterious(0) probably_damaging(1) TCGA-80-5611-01 2 7170260 7170260 G A RNF144A Missense_Mutation p.D221N 0.10 deleterious(0) probably_damaging(0.999) TCGA-80-5611-01 2 77745564 77745564 C T LRRTM4 Missense_Mutation p.M477I 0.18 tolerated(0.19) benign(0.001) TCGA-80-5611-01 2 89326784 89326784 C T IGKV3-11 Missense_Mutation p.G77S 0.08 deleterious(0) possibly_damaging(0.448) TCGA-80-5611-01 2 90249162 90249162 A T IGKV1D-43 Nonsense_Mutation p.R40* 0.16 TCGA-80-5611-01 3 119306535 119306535 G T ADPRH Missense_Mutation p.R295L 0.15 deleterious(0) possibly_damaging(0.608) TCGA-80-5611-01 3 129370423 129370423 C A TMCC1 Silent p.T621T 0.30 TCGA-80-5611-01 3 138478038 138478038 C G PIK3CB Missense_Mutation p.A50P 0.12 deleterious(0.01) probably_damaging(0.974) TCGA-80-5611-01 3 140397023 140397023 G A TRIM42 5'UTR 0.13 TCGA-80-5611-01 3 155200618 155200618 C A PLCH1 Missense_Mutation p.C1074F 0.25 tolerated_low_confidence(0.35) benign(0.001) TCGA-80-5611-01 3 186461616 186461616 A C KNG1 3'Flank 0.14 TCGA-80-5611-01 3 192635485 192635485 G T MB21D2 Silent p.R49R 0.11 TCGA-80-5611-01 3 31917965 31917965 A C OSBPL10 Missense_Mutation p.L166R 0.21 deleterious(0) probably_damaging(1) TCGA-80-5611-01 3 32207365 32207367 TGT - GPD1L In_Frame_Del p.L341del 0.15 TCGA-80-5611-01 3 42845736 42845736 C G HIGD1A 5'UTR 0.32 TCGA-80-5611-01 3 49947983 49947984 GC - MON1A Frame_Shift_Del p.R413Qfs*37 0.50 TCGA-80-5611-01 3 51972152 51972152 A T RRP9 Missense_Mutation p.L80Q 0.55 deleterious(0) probably_damaging(0.994) TCGA-80-5611-01 4 106603997 106603997 G A INTS12 Missense_Mutation p.P428S 0.37 tolerated_low_confidence(0.71) benign(0) TCGA-80-5611-01 4 109773411 109773411 T C COL25A1 Missense_Mutation p.Q457R 0.34 tolerated(0.53) possibly_damaging(0.786) TCGA-80-5611-01 4 126370481 126370481 C T FAT4 Silent p.A2770A 0.07 TCGA-80-5611-01 4 140444545 140444545 T A SETD7 Missense_Mutation p.T203S 0.21 tolerated(0.53) benign(0) TCGA-80-5611-01 4 154626147 154626147 C T TLR2 Silent p.S696S 0.41 TCGA-80-5611-01 4 155720435 155720435 C T RBM46 Missense_Mutation p.P374L 0.23 deleterious(0) possibly_damaging(0.691) TCGA-80-5611-01 4 15964142 15964142 T A FGFBP2 Missense_Mutation p.E204V 0.46 deleterious(0) probably_damaging(0.986) TCGA-80-5611-01 4 166009711 166009711 G A TMEM192 Silent p.F161F 0.67 TCGA-80-5611-01 4 189020308 189020308 C G TRIML2 Missense_Mutation p.E118Q 0.07 tolerated(0.07) possibly_damaging(0.46) TCGA-80-5611-01 4 289872 289872 G C ZNF732 Missense_Mutation p.Q26E 0.08 deleterious(0.01) possibly_damaging(0.848) TCGA-80-5611-01 4 46252429 46252429 C A GABRA2 Missense_Mutation p.D418Y 0.24 deleterious(0) probably_damaging(0.996) TCGA-80-5611-01 4 62897172 62897172 A T LPHN3 Silent p.I1077I 0.25 TCGA-80-5611-01 4 76794373 76794373 C A PPEF2 Silent p.V471V 0.27 TCGA-80-5611-01 4 79334175 79334175 T A FRAS1 Missense_Mutation p.I1454N 0.35 probably_damaging(0.95) TCGA-80-5611-01 4 79793852 79793852 C A BMP2K Missense_Mutation p.L565I 0.16 tolerated_low_confidence(0.17) unknown(0) TCGA-80-5611-01 4 88535135 88535135 A G DSPP Missense_Mutation p.T441A 0.36 benign(0.09) TCGA-80-5611-01 5 112770552 112770552 C T TSSK1B 5'UTR 0.58 TCGA-80-5611-01 5 118502310 118502310 G T DMXL1 Splice_Site p.X1657_splice 0.22 TCGA-80-5611-01 5 128797440 128797440 G T ADAMTS19 Missense_Mutation p.G240V 0.15 tolerated(0.07) possibly_damaging(0.579) TCGA-80-5611-01 5 134785191 134785191 C G TIFAB Missense_Mutation p.E147Q 0.13 deleterious(0.01) possibly_damaging(0.78) TCGA-80-5611-01 5 140188847 140188847 C T PCDHA4 Missense_Mutation p.A692V 0.36 tolerated_low_confidence(0.09) benign(0.01) TCGA-80-5611-01 5 140249915 140249915 C T PCDHA11 Silent p.D409D 0.37 TCGA-80-5611-01 5 140432448 140432448 A C PCDHB1 Missense_Mutation p.N465H 0.45 deleterious(0) probably_damaging(1) TCGA-80-5611-01 5 153792479 153792479 G C GALNT10 Missense_Mutation p.D473H 0.09 deleterious(0) probably_damaging(0.99) TCGA-80-5611-01 5 15928384 15928384 G T FBXL7 Missense_Mutation p.K171N 0.30 tolerated(0.19) benign(0.051) TCGA-80-5611-01 5 160049494 160049494 G T ATP10B Silent p.S573S 0.28 TCGA-80-5611-01 5 16694647 16694647 C T MYO10 Silent p.Q1211Q 0.12 TCGA-80-5611-01 5 16694657 16694657 C A MYO10 Missense_Mutation p.R1208L 0.14 deleterious(0) probably_damaging(0.987) TCGA-80-5611-01 5 169533408 169533408 C G FOXI1 Missense_Mutation p.I149M 0.44 deleterious(0) probably_damaging(0.999) TCGA-80-5611-01 5 176314276 176314276 C T HK3 Missense_Mutation p.V555M 0.14 deleterious(0.03) benign(0.158) TCGA-80-5611-01 5 176637505 176637505 C A NSD1 Missense_Mutation p.P702H 0.46 deleterious_low_confidence(0.01) benign(0.002) TCGA-80-5611-01 5 180668496 180668496 A G GNB2L1 Missense_Mutation p.V142A 0.39 deleterious(0.03) benign(0.163) TCGA-80-5611-01 5 9379955 9379955 T C SEMA5A Missense_Mutation p.H35R 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-80-5611-01 6 133767772 133767772 A G EYA4 Missense_Mutation p.M30V 0.52 tolerated_low_confidence(0.09) benign(0.193) TCGA-80-5611-01 6 150004968 150004968 C T LATS1 Missense_Mutation p.M419I 0.05 deleterious_low_confidence(0.01) benign(0.005) TCGA-80-5611-01 6 165703496 165703496 T - C6orf118 Frame_Shift_Del p.K394Rfs*40 0.13 TCGA-80-5611-01 6 165715261 165715261 C T C6orf118 Missense_Mutation p.V184M 0.19 tolerated(0.06) probably_damaging(0.992) TCGA-80-5611-01 6 166944759 166944759 G A RPS6KA2 Missense_Mutation p.L95F 0.14 deleterious(0.01) possibly_damaging(0.833) TCGA-80-5611-01 6 22290538 22290538 C G PRL Missense_Mutation p.W119C 0.05 deleterious(0) probably_damaging(1) TCGA-80-5611-01 6 24706384 24706384 C A C6orf62 Missense_Mutation p.R224L 0.11 tolerated_low_confidence(0.34) benign(0.001) TCGA-80-5611-01 6 27778233 27778233 G C HIST1H3H Missense_Mutation p.A128P 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.58) TCGA-80-5611-01 6 27860906 27860906 C A HIST1H2AM Missense_Mutation p.G8C 0.26 deleterious_low_confidence(0) unknown(0) TCGA-80-5611-01 6 29408150 29408150 G A OR10C1 Missense_Mutation p.D120N 0.07 deleterious(0) probably_damaging(0.996) TCGA-80-5611-01 6 36730750 36730750 A G CPNE5 Missense_Mutation p.F267L 0.09 deleterious(0.01) benign(0.006) TCGA-80-5611-01 6 37298895 37298895 G T TBC1D22B Missense_Mutation p.A489S 0.07 deleterious(0.02) probably_damaging(0.987) TCGA-80-5611-01 6 42604830 42604830 C T UBR2 Missense_Mutation p.P586S 0.38 tolerated(0.15) benign(0.011) TCGA-80-5611-01 6 43251531 43251531 C T TTBK1 Missense_Mutation p.P1018L 0.15 benign(0.003) TCGA-80-5611-01 6 7572277 7572277 C A DSP Silent p.I702I 0.39 TCGA-80-5611-01 6 75836119 75836119 C A COL12A1 Missense_Mutation p.W2136C 0.25 probably_damaging(0.999) TCGA-80-5611-01 6 97246334 97246334 G A GPR63 3'UTR 0.38 TCGA-80-5611-01 6 99894012 99894013 TG A USP45 Frame_Shift_Del p.K546Rfs*19 0.17 TCGA-80-5611-01 7 121000097 121000097 T A FAM3C Missense_Mutation p.K156I 0.34 deleterious(0) probably_damaging(0.953) TCGA-80-5611-01 7 128399046 128399046 C A CALU Missense_Mutation p.F187L 0.20 deleterious(0) probably_damaging(0.999) TCGA-80-5611-01 7 137363363 137363363 C G DGKI Missense_Mutation p.E182D 0.24 tolerated(0.15) benign(0.065) TCGA-80-5611-01 7 150491059 150491059 G A TMEM176B Missense_Mutation p.A102V 0.18 tolerated(0.12) possibly_damaging(0.544) TCGA-80-5611-01 7 21901534 21901534 C G DNAH11 Missense_Mutation p.R3763G 0.24 possibly_damaging(0.855) TCGA-80-5611-01 7 42003993 42003993 C T GLI3 Missense_Mutation p.G1560R 0.06 deleterious(0) probably_damaging(1) TCGA-80-5611-01 7 65154392 65154392 C A INTS4L2 RNA 0.23 TCGA-80-5611-01 7 6634192 6634192 T G C7orf26 Missense_Mutation p.F181V 0.12 deleterious(0) benign(0.005) TCGA-80-5611-01 7 66479459 66479459 G T TYW1 Missense_Mutation p.D161Y 0.31 deleterious(0) probably_damaging(1) TCGA-80-5611-01 7 92735313 92735313 C A SAMD9 Missense_Mutation p.R33M 0.30 deleterious(0.01) possibly_damaging(0.696) TCGA-80-5611-01 8 113331070 113331070 A T CSMD3 Nonsense_Mutation p.C2452* 0.38 TCGA-80-5611-01 8 125107213 125107213 T C FER1L6 Silent p.C1543C 0.51 TCGA-80-5611-01 8 146156498 146156498 T C ZNF16 Missense_Mutation p.T559A 0.57 tolerated(0.84) benign(0.01) TCGA-80-5611-01 8 36788569 36788569 G A KCNU1 Missense_Mutation p.G946D 0.46 tolerated(0.52) benign(0.003) TCGA-80-5611-01 8 41519378 41519378 G A ANK1 Intron 0.17 TCGA-80-5611-01 9 107298956 107298956 G A OR13C3 Missense_Mutation p.L47F 0.43 tolerated(0.24) benign(0.093) TCGA-80-5611-01 9 107360999 107360999 C A OR13C5 Missense_Mutation p.E232D 0.17 tolerated(0.13) benign(0.058) TCGA-80-5611-01 9 117027203 117027203 G T COL27A1 Splice_Site p.X1084_splice 0.19 TCGA-80-5611-01 9 134459980 134459980 G A RAPGEF1 Silent p.V911V 0.55 TCGA-80-5611-01 9 4697785 4697785 A G CDC37L1 Missense_Mutation p.H218R 0.29 deleterious(0) probably_damaging(0.979) TCGA-80-5611-01 9 5300119 5300119 T C RLN2 Silent p.R179R 0.29 TCGA-80-5611-01 9 77599827 77599827 A G C9orf41 Missense_Mutation p.V375A 0.24 deleterious(0) benign(0.388) TCGA-80-5611-01 X 107397006 107397006 G T ATG4A 3'UTR 0.41 TCGA-80-5611-01 X 144904667 144904667 G A SLITRK2 Missense_Mutation p.V242I 0.70 tolerated(0.08) probably_damaging(0.997) TCGA-80-5611-01 X 154157685 154157686 - T F8 Frame_Shift_Ins p.N1460Kfs*2 0.60 TCGA-80-5611-01 X 24006107 24006107 C A KLHL15 Silent p.L582L 0.33 TCGA-80-5611-01 X 70824260 70824260 A G ACRC Missense_Mutation p.N378S 0.62 unknown(0) TCGA-80-5611-01 X 80001218 80001218 G T BRWD3 Silent p.T147T 0.31 TCGA-80-5611-01 X 83724072 83724072 C A HDX Missense_Mutation p.C220F 0.67 tolerated(0.12) benign(0.005) TCGA-80-5611-01 X 84525150 84525150 C T ZNF711 Missense_Mutation p.T369I 0.53 deleterious(0.02) probably_damaging(0.987) TCGA-83-5908-01 10 13151216 13151216 C G OPTN Missense_Mutation p.L32V 0.26 deleterious(0.02) probably_damaging(0.997) TCGA-83-5908-01 10 21461315 21461315 T A NEBL-AS1 5'Flank 0.28 TCGA-83-5908-01 10 45936815 45936815 C T ALOX5 Silent p.F403F 0.11 TCGA-83-5908-01 10 74810966 74810966 C G P4HA1 Missense_Mutation p.E249Q 0.10 tolerated(0.06) possibly_damaging(0.493) TCGA-83-5908-01 10 75406737 75406737 G A SYNPO2L Silent p.S891S 0.23 TCGA-83-5908-01 10 87406818 87406818 T A GRID1 Intron 0.19 TCGA-83-5908-01 11 101347086 101347086 A G TRPC6 Silent p.L564L 0.07 TCGA-83-5908-01 11 105483139 105483139 C G GRIA4 Missense_Mutation p.N75K 0.17 deleterious(0.01) probably_damaging(0.952) TCGA-83-5908-01 11 116692212 116692212 C - APOA4 Frame_Shift_Del p.A188Pfs*54 0.15 TCGA-83-5908-01 11 125525242 125525242 G T CHEK1 3'UTR 0.14 TCGA-83-5908-01 11 125525243 125525243 G T CHEK1 3'UTR 0.14 TCGA-83-5908-01 11 132398968 132398968 G C OPCML Missense_Mutation p.H171Q 0.27 tolerated(0.08) benign(0.102) TCGA-83-5908-01 11 20673896 20673896 C G SLC6A5 Missense_Mutation p.P711R 0.15 deleterious(0) probably_damaging(0.984) TCGA-83-5908-01 11 45928003 45928003 A G MAPK8IP1 3'UTR 0.32 TCGA-83-5908-01 11 4621637 4621637 C A TRIM68 Missense_Mutation p.G443C 0.20 tolerated(0.07) benign(0.109) TCGA-83-5908-01 11 56310655 56310655 G - OR5M11 Frame_Shift_Del p.L27Ffs*14 0.09 TCGA-83-5908-01 11 62295395 62295395 G A AHNAK Missense_Mutation p.A2165V 0.03 probably_damaging(0.924) TCGA-83-5908-01 11 63992091 63992091 G C TRPT1 Silent p.L144L 0.07 TCGA-83-5908-01 11 6461905 6461905 T C HPX Missense_Mutation p.T47A 0.31 tolerated(0.52) benign(0.007) TCGA-83-5908-01 11 66190333 66190333 C A NPAS4 Missense_Mutation p.P207T 0.18 tolerated(0.41) benign(0.428) TCGA-83-5908-01 11 71725005 71725005 G C NUMA1 Missense_Mutation p.Q1182E 0.07 benign(0.298) TCGA-83-5908-01 11 89868007 89868007 G A NAALAD2 Silent p.V27V 0.10 TCGA-83-5908-01 11 93826744 93826744 C A HEPHL1 Missense_Mutation p.T791K 0.22 deleterious(0.01) possibly_damaging(0.532) TCGA-83-5908-01 11 94040720 94040720 G T FOLR4 Silent p.R198R 0.19 TCGA-83-5908-01 12 100796138 100796138 T C SLC17A8 Missense_Mutation p.Y262H 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-83-5908-01 12 100811935 100811935 G A SLC17A8 Splice_Site p.X475_splice 0.10 TCGA-83-5908-01 12 100904593 100904593 G C NR1H4 Missense_Mutation p.Q49H 0.08 tolerated(0.14) benign(0.016) TCGA-83-5908-01 12 101381375 101381375 G T ANO4 Missense_Mutation p.D186Y 0.22 deleterious(0) probably_damaging(0.994) TCGA-83-5908-01 12 113496148 113496148 G A DTX1 Missense_Mutation p.V51M 0.07 deleterious(0.03) possibly_damaging(0.502) TCGA-83-5908-01 12 120984244 120984244 G A RNF10 Missense_Mutation p.R65H 0.17 deleterious(0) probably_damaging(0.999) TCGA-83-5908-01 12 126128815 126128815 C A TMEM132B Missense_Mutation p.A539D 0.31 tolerated(0.1) benign(0.311) TCGA-83-5908-01 12 13769492 13769492 C A GRIN2B Missense_Mutation p.V409L 0.12 deleterious(0.05) probably_damaging(0.94) TCGA-83-5908-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.44 deleterious(0.02) possibly_damaging(0.773) TCGA-83-5908-01 12 29486610 29486610 C A FAR2 Silent p.I477I 0.22 TCGA-83-5908-01 12 4668053 4668053 G T RAD51AP1 Missense_Mutation p.S318I 0.09 deleterious(0) possibly_damaging(0.857) TCGA-83-5908-01 12 50503385 50503385 C G GPD1 3'UTR 0.19 TCGA-83-5908-01 12 50642451 50642451 C G LIMA1 Missense_Mutation p.K28N 0.10 deleterious(0) probably_damaging(0.933) TCGA-83-5908-01 12 56993823 56993823 C G BAZ2A Silent p.R1652R 0.14 TCGA-83-5908-01 12 58201498 58201498 C T AVIL Missense_Mutation p.E403K 0.11 deleterious(0) probably_damaging(0.999) TCGA-83-5908-01 12 75816695 75816695 C G GLIPR1L2 Missense_Mutation p.T199R 0.12 tolerated(0.39) benign(0.008) TCGA-83-5908-01 14 104208269 104208269 T - PPP1R13B Frame_Shift_Del p.S562Qfs*13 0.12 TCGA-83-5908-01 14 105965220 105965220 G T C14orf80 Missense_Mutation p.Q406H 0.19 tolerated(0.05) probably_damaging(0.967) TCGA-83-5908-01 14 106967548 106967548 C T IGHV1-46 5'UTR 0.17 TCGA-83-5908-01 14 21424020 21424020 A G RNASE2 Silent p.P30P 0.10 TCGA-83-5908-01 14 21756187 21756187 G C RPGRIP1 Missense_Mutation p.D18H 0.12 deleterious(0.02) possibly_damaging(0.819) TCGA-83-5908-01 14 24606563 24606563 C G PSME1 Missense_Mutation p.L57V 0.22 tolerated(0.06) benign(0.444) TCGA-83-5908-01 14 52182106 52182106 G A FRMD6 Missense_Mutation p.G305R 0.23 deleterious(0.02) probably_damaging(0.971) TCGA-83-5908-01 14 65199520 65199520 G C PLEKHG3 Splice_Site p.X360_splice 0.20 TCGA-83-5908-01 14 74876048 74876048 C T SYNDIG1L Missense_Mutation p.D134N 0.19 tolerated(0.11) benign(0.054) TCGA-83-5908-01 14 91804433 91804433 C T CCDC88C Silent p.A322A 0.24 TCGA-83-5908-01 14 94088589 94088589 C G UNC79 Silent p.V1493V 0.18 TCGA-83-5908-01 14 96757936 96757936 C - ATG2B Splice_Site p.X1860_splice 0.13 TCGA-83-5908-01 15 101929744 101929744 C A PCSK6 Missense_Mutation p.C411F 0.11 deleterious(0) probably_damaging(1) TCGA-83-5908-01 15 59124055 59124055 G T FAM63B Missense_Mutation p.Q436H 0.21 deleterious(0.02) probably_damaging(0.969) TCGA-83-5908-01 15 63030533 63030533 G T TLN2 Splice_Site p.X1229_splice 0.10 TCGA-83-5908-01 15 63955275 63955275 C T HERC1 Missense_Mutation p.E2937K 0.14 probably_damaging(0.991) TCGA-83-5908-01 15 63970474 63970474 C T HERC1 Missense_Mutation p.E2214K 0.15 probably_damaging(0.993) TCGA-83-5908-01 15 65157577 65157577 G A PLEKHO2 Silent p.L321L 0.14 TCGA-83-5908-01 15 94983437 94983437 A G MCTP2 Silent p.L706L 0.28 TCGA-83-5908-01 16 202965 202965 C A HBZ Silent p.S19S 0.19 TCGA-83-5908-01 16 2159364 2159364 C A PKD1 Missense_Mutation p.R1935L 0.15 possibly_damaging(0.462) TCGA-83-5908-01 16 31153095 31153095 C T PRSS36 Missense_Mutation p.D570N 0.13 tolerated(0.09) benign(0.062) TCGA-83-5908-01 16 46766489 46766489 G T MYLK3 Missense_Mutation p.P365T 0.19 tolerated(0.16) benign(0.075) TCGA-83-5908-01 16 56669823 56669823 G T MT1M 3'Flank 0.18 TCGA-83-5908-01 16 57060504 57060504 G A NLRC5 Missense_Mutation p.R550Q 0.07 deleterious(0) probably_damaging(0.982) TCGA-83-5908-01 16 71604653 71604653 G A TAT Missense_Mutation p.R281C 0.15 deleterious(0) probably_damaging(1) TCGA-83-5908-01 17 33454101 33454101 G A FNDC8 Missense_Mutation p.E84K 0.10 deleterious_low_confidence(0.01) benign(0.02) TCGA-83-5908-01 17 36880883 36880883 C G MLLT6 Missense_Mutation p.T965S 0.29 tolerated(0.07) possibly_damaging(0.507) TCGA-83-5908-01 17 39642743 39642743 G C KRT36 Missense_Mutation p.S430C 0.30 tolerated(0.42) benign(0.188) TCGA-83-5908-01 17 57647981 57647981 C T DHX40 Missense_Mutation p.S128F 0.10 deleterious(0.01) possibly_damaging(0.659) TCGA-83-5908-01 17 72608914 72608914 T A CD300E Splice_Site p.X166_splice 0.31 TCGA-83-5908-01 17 7577114 7577114 C A TP53 Missense_Mutation p.C275F 0.10 deleterious(0) probably_damaging(0.983) TCGA-83-5908-01 18 72173246 72173246 G T CNDP2 Missense_Mutation p.G123C 0.38 deleterious(0) possibly_damaging(0.677) TCGA-83-5908-01 18 74592216 74592216 C T ZNF236 Missense_Mutation p.P376S 0.27 tolerated(0.18) benign(0.015) TCGA-83-5908-01 18 74592217 74592217 C T ZNF236 Missense_Mutation p.P376L 0.29 tolerated(0.12) benign(0.207) TCGA-83-5908-01 19 11312765 11312765 C T DOCK6 Missense_Mutation p.D1830N 0.14 deleterious(0) probably_damaging(0.917) TCGA-83-5908-01 19 19120951 19120951 C A SUGP2 Missense_Mutation p.R684L 0.08 tolerated(0.07) benign(0.14) TCGA-83-5908-01 19 1917781 1917781 G C SCAMP4 Missense_Mutation p.E32D 0.10 tolerated(0.53) benign(0.035) TCGA-83-5908-01 19 22154720 22154720 C A ZNF208 Missense_Mutation p.S1039I 0.21 tolerated(0.19) benign(0.01) TCGA-83-5908-01 19 22193679 22193679 C G ZNF208 5'UTR 0.14 TCGA-83-5908-01 19 23544912 23544912 C A ZNF91 Missense_Mutation p.G290V 0.20 deleterious(0) probably_damaging(0.991) TCGA-83-5908-01 19 23544913 23544913 C T ZNF91 Missense_Mutation p.G290R 0.20 deleterious(0.03) probably_damaging(0.991) TCGA-83-5908-01 19 36017558 36017558 G T SBSN Missense_Mutation p.N542K 0.20 tolerated(0.06) probably_damaging(0.946) TCGA-83-5908-01 19 39228217 39228217 C G CAPN12 Missense_Mutation p.E343Q 0.23 deleterious(0) possibly_damaging(0.759) TCGA-83-5908-01 19 43023300 43023300 G C CEACAM1 Missense_Mutation p.S349C 0.19 tolerated(0.18) possibly_damaging(0.886) TCGA-83-5908-01 19 43762358 43762358 G C PSG9 Silent p.V413V 0.19 TCGA-83-5908-01 19 48183887 48183887 C G GLTSCR1 Nonsense_Mutation p.S487* 0.08 TCGA-83-5908-01 19 50062164 50062164 C A NOSIP Missense_Mutation p.R83L 0.21 deleterious(0.02) benign(0.25) TCGA-83-5908-01 19 54201662 54201662 G A MIR523 RNA 0.17 TCGA-83-5908-01 19 55294377 55294377 A T KIR2DL1 Missense_Mutation p.N240I 0.44 tolerated(0.44) benign(0.001) TCGA-83-5908-01 19 56243773 56243773 T A NLRP9 Missense_Mutation p.Q475L 0.21 deleterious(0) probably_damaging(0.998) TCGA-83-5908-01 19 57089397 57089397 G T ZNF470 Nonsense_Mutation p.E534* 0.18 TCGA-83-5908-01 19 58427749 58427749 G C ZNF417 Missense_Mutation p.Q11E 0.08 tolerated(0.3) benign(0.021) TCGA-83-5908-01 19 58489707 58489707 G C ZNF606 Missense_Mutation p.Q781E 0.07 tolerated(0.16) probably_damaging(0.981) TCGA-83-5908-01 19 8438756 8438756 G C ANGPTL4 Missense_Mutation p.E403Q 0.23 tolerated(0.32) benign(0.009) TCGA-83-5908-01 1 110038804 110038804 C T CYB561D1 Silent p.L227L 0.11 TCGA-83-5908-01 1 110466590 110466590 G C CSF1 Silent p.R449R 0.25 TCGA-83-5908-01 1 114483771 114483771 G T HIPK1 Nonsense_Mutation p.E256* 0.30 TCGA-83-5908-01 1 151506541 151506541 G T CGN Missense_Mutation p.G945W 0.60 deleterious(0.02) probably_damaging(0.938) TCGA-83-5908-01 1 152882676 152882676 G C IVL Missense_Mutation p.D135H 0.11 deleterious_low_confidence(0.04) unknown(0) TCGA-83-5908-01 1 155296855 155296855 C G RUSC1 Silent p.L782L 0.10 TCGA-83-5908-01 1 156697019 156697019 C G ISG20L2 Missense_Mutation p.Q142H 0.12 tolerated(0.12) possibly_damaging(0.62) TCGA-83-5908-01 1 158517103 158517103 C T OR6Y1 Missense_Mutation p.A265T 0.08 deleterious(0.03) benign(0.118) TCGA-83-5908-01 1 160784372 160784372 C A LY9 Missense_Mutation p.T298K 0.40 tolerated(0.22) benign(0.273) TCGA-83-5908-01 1 176525551 176525551 G C PAPPA2 Missense_Mutation p.K31N 0.21 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-83-5908-01 1 186277600 186277600 G C PRG4 Missense_Mutation p.D917H 0.15 unknown(0) TCGA-83-5908-01 1 205770113 205770113 C G SLC41A1 Missense_Mutation p.E150Q 0.11 deleterious(0) probably_damaging(0.996) TCGA-83-5908-01 1 211192292 211192292 T C KCNH1 Missense_Mutation p.M289V 0.16 tolerated(0.18) benign(0.246) TCGA-83-5908-01 1 211751770 211751771 CG A SLC30A1 Frame_Shift_Del p.R62Cfs*18 0.18 TCGA-83-5908-01 1 214818284 214818284 G T CENPF Nonsense_Mutation p.E1791* 0.08 TCGA-83-5908-01 1 222717109 222717109 C - HHIPL2 Frame_Shift_Del p.S249Vfs*15 0.21 TCGA-83-5908-01 1 223286156 223286156 T A TLR5 Missense_Mutation p.Q73L 0.34 tolerated(0.73) benign(0.003) TCGA-83-5908-01 1 225155495 225155495 T C DNAH14 Intron 0.32 TCGA-83-5908-01 1 227954727 227954727 G T SNAP47 Silent p.L397L 0.17 TCGA-83-5908-01 1 228612711 228612711 C G HIST3H3 Missense_Mutation p.E106Q 0.07 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-83-5908-01 1 228879505 228879505 G C RHOU 3'UTR 0.30 TCGA-83-5908-01 1 248487197 248487197 A C OR2M7 Missense_Mutation p.V225G 0.22 deleterious(0) probably_damaging(0.984) TCGA-83-5908-01 1 248685147 248685147 C A OR2G6 Nonsense_Mutation p.S67* 0.25 TCGA-83-5908-01 1 35227311 35227311 C A GJB4 Silent p.L152L 0.30 TCGA-83-5908-01 1 41486289 41486289 G T SLFNL1 Missense_Mutation p.P15H 0.22 deleterious_low_confidence(0.03) benign(0.395) TCGA-83-5908-01 1 46976207 46976207 G A DMBX1 Missense_Mutation p.A72T 0.12 tolerated(0.35) possibly_damaging(0.747) TCGA-83-5908-01 1 53728116 53728116 A C LRP8 Splice_Site p.X592_splice 0.24 TCGA-83-5908-01 1 6527624 6527624 C G PLEKHG5 Nonstop_Mutation p.*1086Sext*10 0.24 TCGA-83-5908-01 1 76288233 76288233 C T MSH4 Nonsense_Mutation p.Q377* 0.08 TCGA-83-5908-01 1 92195444 92195444 C T TGFBR3 Missense_Mutation p.E219K 0.13 tolerated(0.57) benign(0.083) TCGA-83-5908-01 20 17930849 17930849 C A SNX5 Missense_Mutation p.V240F 0.14 deleterious(0.01) probably_damaging(0.911) TCGA-83-5908-01 20 2378619 2378619 A C TGM6 Missense_Mutation p.H200P 0.20 deleterious(0.01) possibly_damaging(0.594) TCGA-83-5908-01 20 2378631 2378631 C A TGM6 Missense_Mutation p.P204Q 0.20 deleterious(0) probably_damaging(1) TCGA-83-5908-01 20 3008360 3008360 G A PTPRA Missense_Mutation p.R598Q 0.13 deleterious(0.03) probably_damaging(0.919) TCGA-83-5908-01 20 35444364 35444364 C A SOGA1 Missense_Mutation p.R494L 0.26 tolerated(0.37) benign(0.016) TCGA-83-5908-01 20 42815047 42815047 G C JPH2 Nonsense_Mutation p.S100* 0.34 TCGA-83-5908-01 20 45927609 45927609 C G ZMYND8 Missense_Mutation p.R106P 0.16 deleterious(0) probably_damaging(0.971) TCGA-83-5908-01 20 50407327 50407327 G A SALL4 Silent p.P565P 0.11 TCGA-83-5908-01 20 57766549 57766549 C G ZNF831 Missense_Mutation p.L159V 0.26 deleterious(0) probably_damaging(0.998) TCGA-83-5908-01 20 61513536 61513536 G C DIDO1 Missense_Mutation p.P1258A 0.25 probably_damaging(0.994) TCGA-83-5908-01 20 9519935 9519935 T A PAK7 3'UTR 0.20 TCGA-83-5908-01 21 31863878 31863878 G A KRTAP19-3 3'UTR 0.14 TCGA-83-5908-01 22 31884680 31884680 T C EIF4ENIF1 Missense_Mutation p.T9A 0.08 tolerated(0.93) benign(0.001) TCGA-83-5908-01 22 39770513 39770513 G T SYNGR1 Missense_Mutation p.V98F 0.19 deleterious(0) probably_damaging(0.999) TCGA-83-5908-01 22 50716683 50716683 C A PLXNB2 Nonsense_Mutation p.E1584* 0.26 TCGA-83-5908-01 2 113820125 113820125 G T IL36RN Silent p.S113S 0.09 TCGA-83-5908-01 2 116599939 116599939 G C DPP10 3'Flank 0.15 TCGA-83-5908-01 2 121746816 121746816 G T GLI2 Missense_Mutation p.R1109M 0.26 deleterious(0.02) possibly_damaging(0.541) TCGA-83-5908-01 2 128366381 128366381 G C MYO7B Missense_Mutation p.M914I 0.14 tolerated(0.07) probably_damaging(0.985) TCGA-83-5908-01 2 133541416 133541416 C G NCKAP5 Missense_Mutation p.E990Q 0.11 deleterious(0.01) probably_damaging(0.928) TCGA-83-5908-01 2 141625708 141625708 C T LRP1B Missense_Mutation p.V1432M 0.06 possibly_damaging(0.86) TCGA-83-5908-01 2 166245833 166245833 C G SCN2A Silent p.L1839L 0.22 TCGA-83-5908-01 2 166621405 166621405 G A GALNT3 Missense_Mutation p.A226V 0.08 tolerated(0.4) probably_damaging(0.999) TCGA-83-5908-01 2 168099314 168099315 AG T XIRP2 Frame_Shift_Del p.Q471Lfs*28 0.17 TCGA-83-5908-01 2 176965305 176965305 G C HOXD12 Silent p.T210T 0.21 TCGA-83-5908-01 2 179458787 179458787 C G TTN Missense_Mutation p.E19445Q 0.14 TCGA-83-5908-01 2 179485575 179485575 G T TTN Silent p.I15254I 0.06 TCGA-83-5908-01 2 179576668 179576668 C T TTN Intron 0.16 TCGA-83-5908-01 2 219507026 219507026 C T ZNF142 Missense_Mutation p.E1405K 0.13 tolerated(0.25) benign(0.292) TCGA-83-5908-01 2 237405863 237405863 C A IQCA1 Silent p.L93L 0.36 TCGA-83-5908-01 2 241697887 241697887 C A KIF1A Missense_Mutation p.M824I 0.29 tolerated(0.07) probably_damaging(0.92) TCGA-83-5908-01 2 242179421 242179421 G A HDLBP Silent p.I762I 0.10 TCGA-83-5908-01 2 37319141 37319141 G A GPATCH11 Missense_Mutation p.M133I 0.14 tolerated(0.49) benign(0.004) TCGA-83-5908-01 2 74651999 74651999 C T WDR54 Intron 0.09 TCGA-83-5908-01 2 86712946 86712946 C T KDM3A Missense_Mutation p.R1093W 0.09 deleterious(0) probably_damaging(0.999) TCGA-83-5908-01 2 89568178 89568178 C A IGKV1-33 Missense_Mutation p.G19C 0.17 deleterious(0.01) possibly_damaging(0.533) TCGA-83-5908-01 2 90044314 90044314 C A IGKV2D-24 Silent p.R79R 0.13 TCGA-83-5908-01 3 100328802 100328802 C A GPR128 Silent p.I34I 0.34 TCGA-83-5908-01 3 101520629 101520629 G T NXPE3 Missense_Mutation p.R215L 0.44 deleterious(0) possibly_damaging(0.737) TCGA-83-5908-01 3 111604213 111604213 G A PHLDB2 Missense_Mutation p.R430Q 0.11 tolerated(0.5) benign(0.126) TCGA-83-5908-01 3 130659481 130659481 G A ATP2C1 Missense_Mutation p.R157H 0.10 deleterious(0) probably_damaging(0.997) TCGA-83-5908-01 3 137717766 137717766 C G CLDN18 Missense_Mutation p.A19G 0.21 tolerated(0.13) benign(0.104) TCGA-83-5908-01 3 147128439 147128439 G A ZIC1 Silent p.Q180Q 0.23 TCGA-83-5908-01 3 151163685 151163685 G C IGSF10 Missense_Mutation p.P1362A 0.08 tolerated(0.65) benign(0.003) TCGA-83-5908-01 3 182870284 182870284 G A LAMP3 Missense_Mutation p.S256L 0.10 deleterious(0.01) benign(0.211) TCGA-83-5908-01 3 186793532 186793532 G A ST6GAL1 Missense_Mutation p.E388K 0.10 benign(0.043) TCGA-83-5908-01 3 19975199 19975199 C G EFHB Silent p.L104L 0.19 TCGA-83-5908-01 3 24174907 24174907 C G THRB Missense_Mutation p.G262A 0.28 tolerated(0.76) benign(0.008) TCGA-83-5908-01 3 49052720 49052720 G A WDR6 Silent p.%3D 0.18 TCGA-83-5908-01 3 77612379 77612379 A G ROBO2 Silent p.K543K 0.07 TCGA-83-5908-01 3 9949947 9949947 G T IL17RE Missense_Mutation p.V231L 0.27 deleterious(0.03) benign(0.133) TCGA-83-5908-01 4 115998038 115998038 C A NDST4 Missense_Mutation p.C52F 0.15 tolerated_low_confidence(0.22) probably_damaging(0.993) TCGA-83-5908-01 4 174169199 174169199 A T GALNT7 Missense_Mutation p.R65S 0.14 deleterious_low_confidence(0.01) benign(0.034) TCGA-83-5908-01 4 3221906 3221906 C G HTT Intron 0.09 TCGA-83-5908-01 4 42577639 42577639 C A ATP8A1 Missense_Mutation p.Q402H 0.19 deleterious(0) probably_damaging(0.986) TCGA-83-5908-01 4 46930381 46930381 G C GABRA4 Missense_Mutation p.P509R 0.22 deleterious_low_confidence(0.02) possibly_damaging(0.493) TCGA-83-5908-01 4 47559913 47559913 C G ATP10D Missense_Mutation p.S686C 0.06 tolerated(0.06) benign(0.009) TCGA-83-5908-01 4 5018568 5018568 T A CYTL1 Missense_Mutation p.R108W 0.09 deleterious(0.01) probably_damaging(0.995) TCGA-83-5908-01 4 55564662 55564662 C T KIT Silent p.L184L 0.16 TCGA-83-5908-01 4 6718315 6718315 G A BLOC1S4 Missense_Mutation p.E127K 0.22 deleterious(0.02) benign(0.053) TCGA-83-5908-01 4 71115169 71115169 C G CSN3 Missense_Mutation p.T181R 0.23 deleterious(0.03) unknown(0) TCGA-83-5908-01 4 71201754 71201754 T C CABS1 Missense_Mutation p.L333P 0.25 tolerated(0.13) benign(0.102) TCGA-83-5908-01 4 88766515 88766515 G A MEPE Silent p.G165G 0.11 TCGA-83-5908-01 5 1201862 1201862 C A SLC6A19 Missense_Mutation p.P33T 0.23 deleterious(0.01) probably_damaging(1) TCGA-83-5908-01 5 131647754 131647754 G A SLC22A4 Intron 0.43 TCGA-83-5908-01 5 140562302 140562302 G T PCDHB16 Missense_Mutation p.L56F 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.88) TCGA-83-5908-01 5 140626565 140626565 C G PCDHB15 Silent p.V473V 0.11 TCGA-83-5908-01 5 140720531 140720531 G T PCDHGA2 Missense_Mutation p.A665S 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.764) TCGA-83-5908-01 5 14610342 14610342 C T FAM105A Silent p.Y330Y 0.05 TCGA-83-5908-01 5 154393359 154393359 C A KIF4B 5'UTR 0.27 TCGA-83-5908-01 5 156390154 156390154 A T TIMD4 Missense_Mutation p.L19Q 0.30 deleterious(0) probably_damaging(0.997) TCGA-83-5908-01 5 156482344 156482344 G T HAVCR1 Missense_Mutation p.L83I 0.14 tolerated(0.63) possibly_damaging(0.567) TCGA-83-5908-01 5 178417647 178417647 C A GRM6 Nonsense_Mutation p.E320* 0.20 TCGA-83-5908-01 5 178552018 178552018 G T ADAMTS2 Missense_Mutation p.R972S 0.34 deleterious(0.01) probably_damaging(1) TCGA-83-5908-01 5 32388595 32388595 C A ZFR Missense_Mutation p.K776N 0.10 deleterious(0.04) unknown(0) TCGA-83-5908-01 5 32739137 32739137 G A NPR3 Splice_Site p.X353_splice 0.05 TCGA-83-5908-01 5 37443461 37443461 C T WDR70 Nonsense_Mutation p.Q225* 0.12 TCGA-83-5908-01 5 40976934 40976934 C T C7 Silent p.Y719Y 0.21 TCGA-83-5908-01 5 74981228 74981228 G C POC5 Nonsense_Mutation p.S404* 0.14 TCGA-83-5908-01 5 82779404 82779404 A T VCAN Nonsense_Mutation p.K23* 0.16 TCGA-83-5908-01 6 152461159 152461159 C T SYNE1 Missense_Mutation p.E8462K 0.14 benign(0.4) TCGA-83-5908-01 6 168349070 168349070 G T MLLT4 Missense_Mutation p.R1241L 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-83-5908-01 6 22290536 22290536 T A PRL Missense_Mutation p.N120I 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-83-5908-01 6 24145869 24145869 G A NRSN1 Missense_Mutation p.E95K 0.12 tolerated(0.12) benign(0.201) TCGA-83-5908-01 6 25689709 25689709 T C SCGN Silent p.S194S 0.15 TCGA-83-5908-01 6 28501858 28501858 C T GPX5 Missense_Mutation p.P194S 0.19 deleterious(0) probably_damaging(0.992) TCGA-83-5908-01 6 32064717 32064717 C A TNXB Missense_Mutation p.D305Y 0.22 probably_damaging(0.996) TCGA-83-5908-01 6 43306479 43306479 C A ZNF318 Nonsense_Mutation p.E1753* 0.08 TCGA-83-5908-01 6 76024380 76024380 T C FILIP1 Missense_Mutation p.M390V 0.22 deleterious(0) probably_damaging(0.986) TCGA-83-5908-01 6 9900681 9900681 C G OFCC1 Intron 0.21 TCGA-83-5908-01 6 99930642 99930642 G C USP45 Missense_Mutation p.Q278E 0.14 deleterious(0) probably_damaging(0.988) TCGA-83-5908-01 7 100417307 100417307 C G EPHB4 Missense_Mutation p.W390S 0.21 tolerated(0.58) benign(0.001) TCGA-83-5908-01 7 107790309 107790309 G T NRCAM 3'UTR 0.22 TCGA-83-5908-01 7 1131643 1131643 C G GPER1 Missense_Mutation p.I93M 0.08 deleterious(0.02) possibly_damaging(0.863) TCGA-83-5908-01 7 1131904 1131904 C G GPER1 Silent p.L180L 0.11 TCGA-83-5908-01 7 117024785 117024785 G C ASZ1 Missense_Mutation p.H228D 0.14 tolerated(0.12) benign(0) TCGA-83-5908-01 7 120935629 120935629 C A CPED1 Missense_Mutation p.H1002N 0.15 deleterious(0.02) benign(0.022) TCGA-83-5908-01 7 126410030 126410030 G T GRM8 Missense_Mutation p.L416M 0.19 deleterious(0) probably_damaging(0.98) TCGA-83-5908-01 7 138602485 138602485 T A KIAA1549 Silent p.T629T 0.23 TCGA-83-5908-01 7 141478815 141478815 C G TAS2R4 Missense_Mutation p.S176C 0.14 tolerated(0.21) possibly_damaging(0.905) TCGA-83-5908-01 7 141954894 141954894 G T PRSS58 Missense_Mutation p.S139R 0.19 deleterious(0) benign(0.392) TCGA-83-5908-01 7 142459757 142459757 C T PRSS1 Silent p.I111I 0.21 TCGA-83-5908-01 7 14613927 14613927 C A DGKB Missense_Mutation p.R561S 0.20 deleterious(0) probably_damaging(1) TCGA-83-5908-01 7 19184641 19184641 G A FERD3L Silent p.F115F 0.24 TCGA-83-5908-01 7 20698298 20698298 A G ABCB5 Missense_Mutation p.K569R 0.07 deleterious(0.02) probably_damaging(0.992) TCGA-83-5908-01 7 2617908 2617908 G C IQCE Silent p.L166L 0.10 TCGA-83-5908-01 7 27140577 27140577 G T HOXA2 Missense_Mutation p.T300K 0.14 tolerated(0.16) possibly_damaging(0.764) TCGA-83-5908-01 7 37889881 37889881 A T NME8 Nonsense_Mutation p.K5* 0.20 TCGA-83-5908-01 7 44801096 44801096 G T ZMIZ2 Missense_Mutation p.G430V 0.27 deleterious(0) probably_damaging(0.999) TCGA-83-5908-01 7 4874544 4874544 C T RADIL Silent p.A370A 0.33 TCGA-83-5908-01 7 96746961 96746961 A G ACN9 5'UTR 0.19 TCGA-83-5908-01 8 103237126 103237126 C T RRM2B Missense_Mutation p.D148N 0.11 deleterious_low_confidence(0.01) benign(0.105) TCGA-83-5908-01 8 10468061 10468061 C G RP1L1 Missense_Mutation p.D1183H 0.39 possibly_damaging(0.807) TCGA-83-5908-01 8 125463925 125463925 C T TRMT12 Silent p.L253L 0.06 TCGA-83-5908-01 8 22006443 22006443 A G LGI3 Missense_Mutation p.Y293H 0.31 deleterious(0.03) benign(0.052) TCGA-83-5908-01 8 22926373 22926373 G T TNFRSF10B Nonsense_Mutation p.S12* 0.10 TCGA-83-5908-01 8 27288520 27288520 G A PTK2B Missense_Mutation p.R266H 0.06 tolerated(0.06) possibly_damaging(0.63) TCGA-83-5908-01 8 32621715 32621715 C A NRG1 Nonsense_Mutation p.S578* 0.46 TCGA-83-5908-01 8 37732512 37732512 G C RAB11FIP1 Silent p.L381L 0.47 TCGA-83-5908-01 8 37796255 37796255 A T GOT1L1 Missense_Mutation p.L87H 0.24 deleterious(0) probably_damaging(0.997) TCGA-83-5908-01 8 41573326 41573326 G T ANK1 Missense_Mutation p.H515Q 0.34 deleterious(0.03) probably_damaging(0.998) TCGA-83-5908-01 8 68015312 68015312 C T CSPP1 Missense_Mutation p.H331Y 0.23 tolerated(1) benign(0.001) TCGA-83-5908-01 8 68950480 68950480 G A PREX2 Silent p.V264V 0.40 TCGA-83-5908-01 8 71646434 71646434 G T XKR9 Missense_Mutation p.L299F 0.39 deleterious(0.03) benign(0.089) TCGA-83-5908-01 8 77766813 77766813 G T ZFHX4 Silent p.L2552L 0.39 TCGA-83-5908-01 8 91094281 91094281 G T CALB1 Silent p.L43L 0.34 TCGA-83-5908-01 8 99047914 99047914 C T MATN2 Silent p.L949L 0.12 TCGA-83-5908-01 9 103271378 103271378 A T TMEFF1 Missense_Mutation p.K133I 0.12 deleterious(0.03) possibly_damaging(0.609) TCGA-83-5908-01 9 104390581 104390581 T G GRIN3A Silent p.R819R 0.12 TCGA-83-5908-01 9 120476633 120476633 C A TLR4 Missense_Mutation p.Q743K 0.21 deleterious(0.01) possibly_damaging(0.868) TCGA-83-5908-01 9 121976061 121976061 C G BRINP1 Intron 0.19 TCGA-83-5908-01 9 125315718 125315718 C T OR1N2 Silent p.F90F 0.10 TCGA-83-5908-01 9 126144723 126144723 C A DENND1A Missense_Mutation p.R673M 0.06 tolerated(0.06) benign(0.037) TCGA-83-5908-01 9 128074791 128074791 C T GAPVD1 Missense_Mutation p.S501L 0.14 tolerated(0.14) benign(0.002) TCGA-83-5908-01 9 131027930 131027930 C T GOLGA2 Silent p.R262R 0.20 TCGA-83-5908-01 9 134319585 134319585 A C PRRC2B Silent p.S161S 0.09 TCGA-83-5908-01 9 135862704 135862704 C A GFI1B Missense_Mutation p.L46I 0.17 tolerated(0.31) benign(0.002) TCGA-83-5908-01 9 140358794 140358794 C G PNPLA7 Missense_Mutation p.E1052Q 0.15 deleterious(0.04) possibly_damaging(0.864) TCGA-83-5908-01 9 140911616 140911616 G T CACNA1B Intron 0.17 TCGA-83-5908-01 9 16435580 16435580 G T BNC2 Missense_Mutation p.A871E 0.24 deleterious(0) probably_damaging(0.998) TCGA-83-5908-01 9 21141478 21141478 C T IFNW1 Missense_Mutation p.G31D 0.27 tolerated(0.38) benign(0.003) TCGA-83-5908-01 9 32634799 32634799 C A TAF1L Missense_Mutation p.R260L 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-83-5908-01 9 43627805 43627805 G A SPATA31A6 Silent p.N294N 0.32 TCGA-83-5908-01 9 5772969 5772969 C T KIAA1432 Missense_Mutation p.S1291L 0.12 tolerated(0.38) benign(0.019) TCGA-83-5908-01 9 5772980 5772980 C T KIAA1432 Nonsense_Mutation p.Q1295* 0.12 TCGA-83-5908-01 X 100542518 100542518 T A TAF7L Missense_Mutation p.Q91L 0.26 deleterious(0.04) benign(0.086) TCGA-83-5908-01 X 104992979 104992979 G T IL1RAPL2 Missense_Mutation p.G359W 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-83-5908-01 X 105153512 105153512 C G NRK Missense_Mutation p.L628V 0.19 deleterious(0.03) benign(0.017) TCGA-83-5908-01 X 106844429 106844429 C A FRMPD3 Missense_Mutation p.L1087M 0.23 tolerated_low_confidence(0.53) benign(0.05) TCGA-83-5908-01 X 115584296 115584296 T C SLC6A14 Missense_Mutation p.F425S 0.24 deleterious(0) probably_damaging(0.983) TCGA-83-5908-01 X 125298876 125298876 C A DCAF12L2 Silent p.L344L 0.20 TCGA-83-5908-01 X 128925027 128925027 C A SASH3 Missense_Mutation p.L138I 0.20 tolerated(0.23) benign(0.023) TCGA-83-5908-01 X 129159060 129159060 C A BCORL1 Missense_Mutation p.P1262T 0.19 benign(0.039) TCGA-83-5908-01 X 135487978 135487978 C A GPR112 Missense_Mutation p.Q2928K 0.21 deleterious(0.01) benign(0.243) TCGA-83-5908-01 X 149671615 149671615 G T MAMLD1 Intron 0.24 TCGA-83-5908-01 X 151124291 151124291 G T GABRE Silent p.R276R 0.18 TCGA-83-5908-01 X 151128369 151128369 G C GABRE Silent p.L242L 0.12 TCGA-83-5908-01 X 153035337 153035337 C A PLXNB3 Missense_Mutation p.H547Q 0.15 tolerated(1) benign(0.004) TCGA-83-5908-01 X 153041832 153041832 G T PLXNB3 Missense_Mutation p.G1607V 0.16 deleterious(0) probably_damaging(1) TCGA-83-5908-01 X 153208437 153208437 G T RENBP Missense_Mutation p.A186E 0.25 tolerated(0.08) benign(0.342) TCGA-83-5908-01 X 153221828 153221828 G C HCFC1 Silent p.V890V 0.08 TCGA-83-5908-01 X 153247512 153247512 A T TMEM187 5'UTR 0.21 TCGA-83-5908-01 X 153596391 153596391 G A FLNA Silent p.H147H 0.17 TCGA-83-5908-01 X 153631333 153631333 T A DNASE1L1 Missense_Mutation p.T242S 0.27 tolerated(1) benign(0.004) TCGA-83-5908-01 X 22292349 22292349 C A ZNF645 Nonsense_Mutation p.S414* 0.22 TCGA-83-5908-01 X 3228148 3228148 C T MXRA5 Missense_Mutation p.R2699H 0.18 tolerated(0.14) benign(0.077) TCGA-83-5908-01 X 32717249 32717249 G C DMD Missense_Mutation p.Q271E 0.28 benign(0.34) TCGA-83-5908-01 X 34648555 34648555 C T TMEM47 Missense_Mutation p.V141M 0.18 deleterious(0.01) benign(0.328) TCGA-83-5908-01 X 38262952 38262952 G A OTC Missense_Mutation p.A208T 0.14 tolerated(0.08) probably_damaging(0.968) TCGA-83-5908-01 X 49957117 49957117 C A AKAP4 Missense_Mutation p.Q749H 0.32 tolerated(0.08) benign(0.038) TCGA-83-5908-01 X 67333083 67333083 T G OPHN1 Splice_Site p.X454_splice 0.20 TCGA-83-5908-01 X 70340905 70340905 G T MED12 Missense_Mutation p.G213V 0.29 benign(0.145) TCGA-83-5908-01 X 70340906 70340906 G T MED12 Silent p.G213G 0.29 TCGA-83-5908-01 X 71428461 71428461 G T ERCC6L Silent p.P52P 0.15 TCGA-83-5908-01 X 73066237 73066237 G A XIST RNA 0.22 TCGA-83-5908-01 X 76890170 76890170 C A ATRX Missense_Mutation p.C1575F 0.19 probably_damaging(0.997) TCGA-83-5908-01 X 79282364 79282364 A G TBX22 Silent p.Q265Q 0.11 TCGA-86-6562-01 10 103901711 103901711 C A PPRC1 Missense_Mutation p.P1149Q 0.23 tolerated_low_confidence(0.06) benign(0.012) TCGA-86-6562-01 10 123970013 123970013 G A TACC2 Missense_Mutation p.D2025N 0.13 probably_damaging(0.995) TCGA-86-6562-01 11 211339 211339 G A RIC8A Missense_Mutation p.R320H 0.08 deleterious(0) probably_damaging(0.996) TCGA-86-6562-01 11 32456382 32456382 G C WT1 Silent p.G170G 0.16 TCGA-86-6562-01 11 3429983 3429983 C T TSSC2 RNA 0.24 TCGA-86-6562-01 11 56380559 56380559 G A OR5M1 Silent p.I140I 0.16 TCGA-86-6562-01 12 109698352 109698352 C A ACACB Silent p.P2188P 0.47 TCGA-86-6562-01 12 109702190 109702190 C A ACACB Missense_Mutation p.S2314Y 0.08 tolerated(0.2) benign(0.011) TCGA-86-6562-01 12 121204115 121204115 T C SPPL3 Missense_Mutation p.Y345C 0.23 deleterious(0) probably_damaging(1) TCGA-86-6562-01 12 51501052 51501052 A G TFCP2 Silent p.Y265Y 0.32 TCGA-86-6562-01 12 52942007 52942007 C T KRT71 Missense_Mutation p.E303K 0.10 deleterious(0.02) benign(0.258) TCGA-86-6562-01 12 56495860 56495860 C G ERBB3 3'UTR 0.31 TCGA-86-6562-01 12 665822 665822 C T B4GALNT3 Missense_Mutation p.R724W 0.07 deleterious(0) probably_damaging(1) TCGA-86-6562-01 13 28855451 28855451 G T PAN3 Splice_Site p.X774_splice 0.20 TCGA-86-6562-01 14 105418451 105418451 G A AHNAK2 Missense_Mutation p.P1113S 0.16 benign(0.426) TCGA-86-6562-01 14 33015676 33015676 G T AKAP6 Missense_Mutation p.G606V 0.12 tolerated(0.1) benign(0.002) TCGA-86-6562-01 15 58467128 58467128 T A AQP9 Missense_Mutation p.S130T 0.16 tolerated(0.28) benign(0.026) TCGA-86-6562-01 15 70960850 70960850 C G UACA Missense_Mutation p.D725H 0.10 deleterious(0) probably_damaging(0.933) TCGA-86-6562-01 15 70961012 70961012 G T UACA Missense_Mutation p.L671I 0.19 tolerated(0.16) benign(0.291) TCGA-86-6562-01 16 4829784 4829784 G A SEPT12 Nonsense_Mutation p.R244* 0.30 TCGA-86-6562-01 16 67265670 67265670 G A FHOD1 Missense_Mutation p.A752V 0.25 deleterious(0) probably_damaging(1) TCGA-86-6562-01 16 76555040 76555040 C A CNTNAP4 Nonsense_Mutation p.S717* 0.33 TCGA-86-6562-01 17 18063273 18063273 C T MYO15A Missense_Mutation p.R3110W 0.16 unknown(0) TCGA-86-6562-01 17 27004785 27004785 C G SUPT6H Missense_Mutation p.A317G 0.11 deleterious(0.01) probably_damaging(0.976) TCGA-86-6562-01 17 27993938 27993938 C T SSH2 Missense_Mutation p.V300M 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-86-6562-01 17 37880997 37880998 - TCT ERBB2 In_Frame_Ins p.G776delinsVC 0.23 TCGA-86-6562-01 17 4871101 4871101 T G SPAG7 5'UTR 0.13 TCGA-86-6562-01 17 57968194 57968194 C G TUBD1 Missense_Mutation p.G57A 0.10 tolerated(0.07) benign(0.169) TCGA-86-6562-01 17 72815930 72815930 C T TMEM104 Silent p.D226D 0.25 TCGA-86-6562-01 18 14752603 14752603 A T ANKRD30B Missense_Mutation p.E87V 0.15 deleterious(0) possibly_damaging(0.879) TCGA-86-6562-01 18 43577777 43577777 G A PSTPIP2 Missense_Mutation p.H194Y 0.42 deleterious(0.02) benign(0.089) TCGA-86-6562-01 18 43577778 43577778 C G PSTPIP2 Silent p.L193L 0.44 TCGA-86-6562-01 18 61465845 61465845 C G SERPINB7 Missense_Mutation p.I154M 0.09 deleterious(0) probably_damaging(0.998) TCGA-86-6562-01 19 57910809 57910809 G A ZNF548 Missense_Mutation p.R397K 0.05 tolerated(0.29) benign(0.007) TCGA-86-6562-01 1 120050005 120050005 C T HSD3B1 Intron 0.20 TCGA-86-6562-01 1 120050058 120050058 C T HSD3B1 5'UTR 0.14 TCGA-86-6562-01 1 120050082 120050082 C T HSD3B1 5'UTR 0.19 TCGA-86-6562-01 1 120050242 120050242 C T HSD3B1 Missense_Mutation p.S48F 0.22 deleterious(0.04) benign(0.076) TCGA-86-6562-01 1 1412655 1412655 T C ATAD3B Silent p.R69R 0.31 TCGA-86-6562-01 1 150916440 150916440 A T SETDB1 Missense_Mutation p.Q307L 0.09 tolerated(0.11) benign(0) TCGA-86-6562-01 1 167815048 167815048 C G ADCY10 Silent p.V920V 0.08 TCGA-86-6562-01 1 168510221 168510221 G A XCL2 Missense_Mutation p.S105L 0.08 deleterious(0.03) benign(0.032) TCGA-86-6562-01 1 203276285 203276285 C G BTG2 Missense_Mutation p.R66G 0.20 deleterious(0) probably_damaging(0.998) TCGA-86-6562-01 1 20827068 20827068 T C MUL1 3'UTR 0.14 TCGA-86-6562-01 1 216824404 216824404 G A ESRRG Missense_Mutation p.T172M 0.21 tolerated(0.21) possibly_damaging(0.565) TCGA-86-6562-01 1 234509420 234509420 G A COA6 5'Flank 0.07 TCGA-86-6562-01 1 32573724 32573724 G A KPNA6 5'UTR 0.16 TCGA-86-6562-01 1 52703522 52703522 G T ZFYVE9 Nonsense_Mutation p.E145* 0.42 TCGA-86-6562-01 22 31492754 31492754 G C SMTN Missense_Mutation p.E633Q 0.18 deleterious(0) possibly_damaging(0.675) TCGA-86-6562-01 2 168101954 168101954 G T XIRP2 Missense_Mutation p.R1351M 0.04 probably_damaging(1) TCGA-86-6562-01 2 178969106 178969106 G A CYCTP RNA 0.09 TCGA-86-6562-01 2 186697992 186697992 G C FSIP2 3'UTR 0.15 TCGA-86-6562-01 2 197629319 197629319 G C GTF3C3 Missense_Mutation p.Q877E 0.09 deleterious(0.03) benign(0.008) TCGA-86-6562-01 2 26151924 26151924 G A KIF3C Missense_Mutation p.R769W 0.14 benign(0.026) TCGA-86-6562-01 2 32476011 32476011 G C NLRC4 Missense_Mutation p.L308V 0.07 deleterious(0.01) probably_damaging(0.99) TCGA-86-6562-01 2 42488319 42488319 C G EML4 Missense_Mutation p.H133D 0.07 tolerated(0.57) benign(0.146) TCGA-86-6562-01 2 46986084 46986084 G C SOCS5 Missense_Mutation p.D139H 0.10 deleterious(0.01) benign(0.173) TCGA-86-6562-01 3 134280398 134280398 C A CEP63 3'UTR 0.57 TCGA-86-6562-01 4 105412175 105412175 G A CXXC4 Missense_Mutation p.A262V 0.24 deleterious(0.01) probably_damaging(0.909) TCGA-86-6562-01 4 187521354 187521354 G A FAT1 Missense_Mutation p.S3934L 0.06 probably_damaging(0.987) TCGA-86-6562-01 4 189064971 189064971 T G TRIML1 Intron 0.04 TCGA-86-6562-01 4 48542536 48542536 C T FRYL Silent p.K2043K 0.08 TCGA-86-6562-01 6 146215302 146215302 C T SHPRH Missense_Mutation p.R1560H 0.18 tolerated(0.09) benign(0.244) TCGA-86-6562-01 6 57006175 57006175 C T ZNF451 Missense_Mutation p.L260F 0.17 tolerated(0.09) probably_damaging(1) TCGA-86-6562-01 7 102087127 102087127 G A ORAI2 Silent p.L131L 0.08 TCGA-86-6562-01 7 122091483 122091483 C G CADPS2 Missense_Mutation p.E745Q 0.04 tolerated(0.69) benign(0.08) TCGA-86-6562-01 7 38393521 38393521 T A TRGV4 Missense_Mutation p.Y50F 0.13 tolerated(0.06) possibly_damaging(0.888) TCGA-86-6562-01 7 91712538 91712538 C T AKAP9 Missense_Mutation p.H2739Y 0.13 benign(0.118) TCGA-86-6562-01 9 101052878 101052878 G C GABBR2 Silent p.V938V 0.57 TCGA-86-6562-01 9 35059603 35059603 G C VCP Missense_Mutation p.P631A 0.14 deleterious(0.04) benign(0.025) TCGA-86-6562-01 9 77339635 77339635 T C TRPM6 Missense_Mutation p.E1988G 0.13 tolerated(1) benign(0.001) TCGA-86-6562-01 9 79635526 79635526 T C FOXB2 Missense_Mutation p.V319A 0.20 deleterious_low_confidence(0.02) probably_damaging(0.97) TCGA-86-6562-01 X 101970073 101970073 A G GPRASP2 Silent p.G92G 0.21 TCGA-86-6562-01 X 117480481 117480481 C A WDR44 Missense_Mutation p.S5R 0.07 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-86-6562-01 X 52682498 52682498 T C SSX7 Missense_Mutation p.R9G 0.05 deleterious(0) benign(0.14) TCGA-86-6851-01 10 101560265 101560265 G T ABCC2 Missense_Mutation p.C385F 0.06 deleterious(0) probably_damaging(1) TCGA-86-6851-01 10 108923926 108923926 C A SORCS1 Missense_Mutation p.R120L 0.19 tolerated_low_confidence(0.19) benign(0.028) TCGA-86-6851-01 10 115364431 115364431 G T NRAP Missense_Mutation p.F1388L 0.23 deleterious(0) possibly_damaging(0.728) TCGA-86-6851-01 10 117024743 117024743 A G ATRNL1 Silent p.V587V 0.05 TCGA-86-6851-01 10 120450853 120450853 C A CACUL1 Missense_Mutation p.V317L 0.25 tolerated(0.42) benign(0.001) TCGA-86-6851-01 10 12159749 12159749 A C DHTKD1 Silent p.P799P 0.07 TCGA-86-6851-01 10 129904768 129904768 C A MKI67 Missense_Mutation p.G1779V 0.33 deleterious(0) possibly_damaging(0.85) TCGA-86-6851-01 10 135213068 135213068 C G MTG1 Silent p.P152P 0.21 TCGA-86-6851-01 10 13672285 13672285 G A PRPF18 Missense_Mutation p.C325Y 0.15 deleterious(0) probably_damaging(0.977) TCGA-86-6851-01 10 15263042 15263042 C A FAM171A1 Missense_Mutation p.G258C 0.08 deleterious(0) probably_damaging(0.984) TCGA-86-6851-01 10 15760795 15760795 G A ITGA8 Nonsense_Mutation p.Q105* 0.08 TCGA-86-6851-01 10 17887177 17887177 A T MRC1L1 Intron 0.56 TCGA-86-6851-01 10 17949705 17949705 A G MRC1L1 Missense_Mutation p.R1357G 0.31 benign(0.091) TCGA-86-6851-01 10 22002777 22002777 C T MLLT10 Silent p.S592S 0.17 TCGA-86-6851-01 10 25883274 25883274 C A GPR158 Missense_Mutation p.A649E 0.26 deleterious(0.01) probably_damaging(0.954) TCGA-86-6851-01 10 27703193 27703193 T C PTCHD3 5'UTR 0.41 TCGA-86-6851-01 10 28149741 28149741 G C ARMC4 Missense_Mutation p.A945G 0.16 deleterious(0) probably_damaging(0.923) TCGA-86-6851-01 10 30336711 30336711 G T KIAA1462 Missense_Mutation p.H11N 0.12 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 10 38344212 38344212 G T ZNF33A Missense_Mutation p.C387F 0.21 deleterious(0.01) probably_damaging(1) TCGA-86-6851-01 10 46264993 46264993 G T FAM21C Missense_Mutation p.A656S 0.28 tolerated(0.22) possibly_damaging(0.705) TCGA-86-6851-01 10 53458533 53458533 C G CSTF2T Missense_Mutation p.Q259H 0.11 tolerated(0.08) probably_damaging(0.965) TCGA-86-6851-01 10 55566610 55566610 A T PCDH15 Missense_Mutation p.L1592Q 0.05 deleterious_low_confidence(0) benign(0.006) TCGA-86-6851-01 10 5791571 5791571 C G FAM208B Missense_Mutation p.L2063V 0.11 tolerated(0.36) benign(0.021) TCGA-86-6851-01 10 61083748 61083748 C A FAM13C Missense_Mutation p.R148I 0.06 deleterious(0) probably_damaging(0.915) TCGA-86-6851-01 10 71000429 71000429 G T HKDC1 Missense_Mutation p.A205S 0.36 deleterious(0.01) possibly_damaging(0.649) TCGA-86-6851-01 10 71678040 71678040 G T COL13A1 Splice_Site p.X333_splice 0.27 TCGA-86-6851-01 10 7214086 7214086 T C SFMBT2 Missense_Mutation p.D729G 0.17 deleterious(0.02) benign(0.213) TCGA-86-6851-01 10 75883569 75883569 C - AP3M1 Frame_Shift_Del p.%3D 0.30 TCGA-86-6851-01 10 7755193 7755193 G T ITIH2 Missense_Mutation p.G138C 0.12 deleterious(0) probably_damaging(0.93) TCGA-86-6851-01 10 7771952 7771952 G T ITIH2 Missense_Mutation p.K439N 0.38 deleterious(0.01) probably_damaging(0.968) TCGA-86-6851-01 10 7866463 7866463 G T TAF3 Missense_Mutation p.A117S 0.33 deleterious(0) possibly_damaging(0.878) TCGA-86-6851-01 10 85974034 85974034 C G CDHR1 Missense_Mutation p.P746R 0.35 tolerated_low_confidence(0.27) benign(0.374) TCGA-86-6851-01 10 85974197 85974197 G - CDHR1 Frame_Shift_Del p.A801Rfs*40 0.35 TCGA-86-6851-01 10 89312264 89312264 G C MINPP1 3'UTR 0.08 TCGA-86-6851-01 10 90427435 90427435 G T LIPF Missense_Mutation p.G82V 0.21 tolerated(0.22) benign(0.003) TCGA-86-6851-01 10 94228661 94228661 C A IDE Silent p.R765R 0.07 TCGA-86-6851-01 11 1011186 1011186 A T AP2A2 3'UTR 0.18 TCGA-86-6851-01 11 102448108 102448108 C G MMP20 Missense_Mutation p.E467D 0.06 tolerated(0.23) benign(0.123) TCGA-86-6851-01 11 102932999 102932999 T C DCUN1D5 3'UTR 0.25 TCGA-86-6851-01 11 104874094 104874094 C A CASP5 Missense_Mutation p.E163D 0.20 tolerated(0.37) benign(0.429) TCGA-86-6851-01 11 1087978 1087978 C T MUC2 Silent p.I1151I 0.20 TCGA-86-6851-01 11 111784584 111784584 G A HSPB2 Missense_Mutation p.E172K 0.17 tolerated_low_confidence(0.19) unknown(0) TCGA-86-6851-01 11 113813800 113813800 C T HTR3B Missense_Mutation p.P265S 0.20 deleterious(0.01) possibly_damaging(0.745) TCGA-86-6851-01 11 114270819 114270819 C A C11orf71 Missense_Mutation p.D79Y 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.889) TCGA-86-6851-01 11 114569052 114569052 G T NXPE2 Nonsense_Mutation p.G140* 0.27 TCGA-86-6851-01 11 116706556 116706556 C G APOA1 Missense_Mutation p.E258Q 0.13 tolerated(0.07) possibly_damaging(0.754) TCGA-86-6851-01 11 117234214 117234214 G C CEP164 Missense_Mutation p.E253Q 0.09 deleterious(0.01) possibly_damaging(0.703) TCGA-86-6851-01 11 117265697 117265697 G C CEP164 Missense_Mutation p.R941T 0.22 deleterious(0.02) benign(0.076) TCGA-86-6851-01 11 118952213 118952213 T C VPS11 Silent p.F901F 0.24 TCGA-86-6851-01 11 119548513 119548513 C A PVRL1 Missense_Mutation p.G162V 0.24 tolerated(0.17) possibly_damaging(0.884) TCGA-86-6851-01 11 121429484 121429484 G - SORL1 Frame_Shift_Del p.G950Afs*58 0.21 TCGA-86-6851-01 11 121498416 121498416 G T SORL1 Missense_Mutation p.A2173S 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-86-6851-01 11 123900548 123900548 T G OR10G8 Silent p.T73T 0.21 TCGA-86-6851-01 11 124413387 124413387 T A OR8B12 Missense_Mutation p.H55L 0.21 deleterious_low_confidence(0) possibly_damaging(0.796) TCGA-86-6851-01 11 124440912 124440912 C A OR8A1 Silent p.A316A 0.36 TCGA-86-6851-01 11 124745154 124745154 C A ROBO3 Missense_Mutation p.Q741K 0.11 deleterious(0) probably_damaging(0.994) TCGA-86-6851-01 11 125618581 125618581 A T PATE1 Missense_Mutation p.N112Y 0.22 deleterious(0) possibly_damaging(0.847) TCGA-86-6851-01 11 1272524 1272524 C G MUC5B Missense_Mutation p.S4805C 0.11 unknown(0) TCGA-86-6851-01 11 128709201 128709201 G T KCNJ1 Missense_Mutation p.T332K 0.37 deleterious(0) possibly_damaging(0.753) TCGA-86-6851-01 11 128781254 128781254 C A KCNJ5 Missense_Mutation p.A29D 0.16 tolerated(0.07) benign(0.323) TCGA-86-6851-01 11 128786491 128786491 G A KCNJ5 Silent p.R375R 0.14 TCGA-86-6851-01 11 130069888 130069888 G T ST14 Missense_Mutation p.G617V 0.18 deleterious(0.01) probably_damaging(1) TCGA-86-6851-01 11 17544392 17544392 G T USH1C Missense_Mutation p.Q320K 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.9) TCGA-86-6851-01 11 18738369 18738369 G T IGSF22 Missense_Mutation p.H384Q 0.24 deleterious(0) probably_damaging(0.977) TCGA-86-6851-01 11 20119157 20119157 T C NAV2 Missense_Mutation p.L2075P 0.26 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 11 20178115 20178115 T C DBX1 Missense_Mutation p.K265R 0.09 deleterious(0) probably_damaging(0.984) TCGA-86-6851-01 11 20429456 20429456 G T PRMT3 Splice_Site p.X258_splice 0.29 TCGA-86-6851-01 11 2337814 2337814 C T TSPAN32 Silent p.A212A 0.21 TCGA-86-6851-01 11 26655768 26655768 T A ANO3 Missense_Mutation p.S631T 0.22 tolerated(0.86) possibly_damaging(0.887) TCGA-86-6851-01 11 27016024 27016025 - T FIBIN 5'UTR 0.13 TCGA-86-6851-01 11 3849149 3849149 G C RHOG Missense_Mutation p.Q74E 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-86-6851-01 11 40136437 40136437 G A LRRC4C Missense_Mutation p.A469V 0.29 tolerated(0.38) benign(0.002) TCGA-86-6851-01 11 40136889 40136889 G T LRRC4C Missense_Mutation p.D318E 0.33 tolerated(1) benign(0) TCGA-86-6851-01 11 48267425 48267425 T C OR4X2 Missense_Mutation p.L257P 0.17 deleterious(0) probably_damaging(0.987) TCGA-86-6851-01 11 48347249 48347249 C A OR4C3 Missense_Mutation p.H253N 0.08 deleterious(0.01) possibly_damaging(0.828) TCGA-86-6851-01 11 49208318 49208318 C A FOLH1 Missense_Mutation p.D173Y 0.18 deleterious(0) probably_damaging(0.987) TCGA-86-6851-01 11 5020306 5020306 C A OR51L1 Missense_Mutation p.L32I 0.27 deleterious(0.04) benign(0.001) TCGA-86-6851-01 11 5152990 5152990 A G OR52A5 Missense_Mutation p.Y295H 0.28 deleterious(0) probably_damaging(0.98) TCGA-86-6851-01 11 5462541 5462541 G T OR51I1 Silent p.L68L 0.16 TCGA-86-6851-01 11 55111564 55111564 G T OR4A16 Missense_Mutation p.M296I 0.27 tolerated_low_confidence(0.16) benign(0.011) TCGA-86-6851-01 11 55135452 55135452 G T OR4A15 Missense_Mutation p.M31I 0.18 deleterious_low_confidence(0) benign(0.072) TCGA-86-6851-01 11 55541121 55541121 T A OR5D13 Missense_Mutation p.L70M 0.17 deleterious(0) possibly_damaging(0.541) TCGA-86-6851-01 11 55579578 55579578 G C OR5L1 Missense_Mutation p.M212I 0.21 tolerated(0.26) benign(0.001) TCGA-86-6851-01 11 56114262 56114262 C A OR8K1 Missense_Mutation p.H250N 0.25 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-86-6851-01 11 56237537 56237537 G T OR5M3 Missense_Mutation p.P146H 0.22 deleterious(0) probably_damaging(0.969) TCGA-86-6851-01 11 56468604 56468604 C G OR9G1 Silent p.V247V 0.07 TCGA-86-6851-01 11 57106021 57106021 C A P2RX3 5'UTR 0.05 TCGA-86-6851-01 11 57569438 57569438 A G CTNND1 Missense_Mutation p.N397S 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-86-6851-01 11 58206793 58206793 T C OR5B12 Missense_Mutation p.I278V 0.24 tolerated_low_confidence(0.1) benign(0.011) TCGA-86-6851-01 11 59225153 59225153 C A OR4D6 Nonsense_Mutation p.C240* 0.21 TCGA-86-6851-01 11 5969313 5969313 G T OR56A3 Missense_Mutation p.G246V 0.25 tolerated(0.08) benign(0.309) TCGA-86-6851-01 11 6129206 6129206 C A OR56B4 Nonsense_Mutation p.Y66* 0.38 TCGA-86-6851-01 11 6129645 6129645 G C OR56B4 Missense_Mutation p.V213L 0.20 tolerated(1) benign(0.004) TCGA-86-6851-01 11 62293116 62293116 C A AHNAK Missense_Mutation p.V2925F 0.24 possibly_damaging(0.887) TCGA-86-6851-01 11 62356644 62356644 T C TUT1 Silent p.V82V 0.15 TCGA-86-6851-01 11 6292011 6292011 C A CCKBR Silent p.V263V 0.33 TCGA-86-6851-01 11 63283950 63283950 C T LGALS12 3'UTR 0.36 TCGA-86-6851-01 11 63671564 63671564 A T MARK2 Missense_Mutation p.N541Y 0.21 tolerated(0.58) benign(0.17) TCGA-86-6851-01 11 64521742 64521742 G T PYGM Silent p.R359R 0.19 TCGA-86-6851-01 11 65271793 65271793 A G MALAT1 RNA 0.25 TCGA-86-6851-01 11 65824815 65824815 C T SF3B2 Missense_Mutation p.P249L 0.05 tolerated_low_confidence(0.15) benign(0.081) TCGA-86-6851-01 11 66335045 66335045 G A CTSF Missense_Mutation p.A134V 0.19 tolerated(0.16) benign(0.098) TCGA-86-6851-01 11 68370837 68370837 G C PPP6R3 Missense_Mutation p.S776T 0.19 tolerated(0.25) benign(0.005) TCGA-86-6851-01 11 68748265 68748265 T C MRGPRD Missense_Mutation p.Y64C 0.19 tolerated(0.06) possibly_damaging(0.907) TCGA-86-6851-01 11 70253623 70253623 G C CTTN Splice_Site p.X30_splice 0.18 TCGA-86-6851-01 11 73796749 73796749 T C C2CD3 Missense_Mutation p.H1275R 0.22 tolerated(1) benign(0.005) TCGA-86-6851-01 11 7950041 7950041 C A OR10A6 Missense_Mutation p.V57F 0.32 deleterious(0) benign(0.232) TCGA-86-6851-01 11 8123070 8123070 G T TUB Missense_Mutation p.E530D 0.20 tolerated(0.37) benign(0.049) TCGA-86-6851-01 11 85630410 85630410 C A CCDC83 Missense_Mutation p.P398T 0.30 deleterious(0) probably_damaging(0.991) TCGA-86-6851-01 11 88780897 88780897 A C GRM5 Silent p.T48T 0.29 TCGA-86-6851-01 11 89409322 89409322 A T FOLH1B RNA 0.18 TCGA-86-6851-01 11 89774425 89774425 G T TRIM49C Missense_Mutation p.G356C 0.32 deleterious(0) probably_damaging(1) TCGA-86-6851-01 11 9009769 9009769 C G NRIP3 Missense_Mutation p.G79R 0.23 tolerated(0.2) benign(0.084) TCGA-86-6851-01 11 9163520 9163520 C - DENND5A Frame_Shift_Del p.G1216Afs*38 0.26 TCGA-86-6851-01 11 92087375 92087375 G A FAT3 Silent p.K699K 0.27 TCGA-86-6851-01 11 92498135 92498135 C G FAT3 Missense_Mutation p.P1359A 0.17 benign(0.287) TCGA-86-6851-01 11 92613961 92613961 C G FAT3 Missense_Mutation p.C4064W 0.25 probably_damaging(0.999) TCGA-86-6851-01 11 94212876 94212876 C A MRE11A Silent p.V122V 0.25 TCGA-86-6851-01 12 100796415 100796415 G T SLC17A8 Silent p.P315P 0.29 TCGA-86-6851-01 12 101333107 101333107 A G ANO4 Missense_Mutation p.N24D 0.15 tolerated_low_confidence(0.68) benign(0.002) TCGA-86-6851-01 12 101505362 101505362 A T ANO4 Missense_Mutation p.E740V 0.33 tolerated(0.16) probably_damaging(1) TCGA-86-6851-01 12 104698266 104698266 G A EID3 Missense_Mutation p.R185Q 0.28 deleterious(0.03) probably_damaging(0.976) TCGA-86-6851-01 12 105151069 105151069 C T CHST11 Silent p.L183L 0.18 TCGA-86-6851-01 12 110760866 110760866 C T ATP2A2 Missense_Mutation p.S178L 0.15 deleterious(0) possibly_damaging(0.87) TCGA-86-6851-01 12 11286614 11286614 C A TAS2R30 Missense_Mutation p.S77I 0.07 deleterious(0.04) possibly_damaging(0.861) TCGA-86-6851-01 12 113906943 113906943 C G LHX5 Missense_Mutation p.E127D 0.22 tolerated(0.35) benign(0.002) TCGA-86-6851-01 12 116445213 116445213 T C MED13L Intron 0.17 TCGA-86-6851-01 12 118020126 118020126 G A KSR2 Missense_Mutation p.R404C 0.16 deleterious(0) probably_damaging(1) TCGA-86-6851-01 12 122675978 122675978 G A LRRC43 Missense_Mutation p.G318E 0.24 deleterious(0) probably_damaging(1) TCGA-86-6851-01 12 123801789 123801789 C A SBNO1 Missense_Mutation p.D972Y 0.14 deleterious(0) probably_damaging(0.99) TCGA-86-6851-01 12 124272402 124272402 C T DNAH10 Silent p.L430L 0.19 TCGA-86-6851-01 12 124382337 124382337 G T DNAH10 Missense_Mutation p.A2983S 0.18 benign(0.009) TCGA-86-6851-01 12 129373192 129373192 A G GLT1D1 Missense_Mutation p.I76V 0.17 tolerated(0.44) benign(0.068) TCGA-86-6851-01 12 130648759 130648759 G C FZD10 Silent p.R424R 0.18 TCGA-86-6851-01 12 133218360 133218360 C A POLE Missense_Mutation p.A1751S 0.23 tolerated(0.33) benign(0.052) TCGA-86-6851-01 12 133277921 133277921 T A PXMP2 Missense_Mutation p.L162Q 0.25 deleterious(0.02) possibly_damaging(0.827) TCGA-86-6851-01 12 13716789 13716789 C A GRIN2B Missense_Mutation p.G1128V 0.40 tolerated(0.06) possibly_damaging(0.825) TCGA-86-6851-01 12 13716964 13716964 A T GRIN2B Missense_Mutation p.Y1070N 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-86-6851-01 12 18858220 18858220 T A PLCZ1 Missense_Mutation p.L248F 0.46 deleterious(0) probably_damaging(1) TCGA-86-6851-01 12 20522936 20522936 C A PDE3A Missense_Mutation p.L240M 0.41 deleterious(0.02) probably_damaging(0.974) TCGA-86-6851-01 12 20783002 20783002 C A PDE3A Nonsense_Mutation p.Y567* 0.41 TCGA-86-6851-01 12 23793749 23793749 C A SOX5 Silent p.L338L 0.12 TCGA-86-6851-01 12 2742805 2742805 G T CACNA1C Missense_Mutation p.S1300I 0.13 deleterious(0.04) benign(0.005) TCGA-86-6851-01 12 29904696 29904696 G A TMTC1 Missense_Mutation p.H281Y 0.39 tolerated(0.65) benign(0.328) TCGA-86-6851-01 12 29920927 29920927 C A TMTC1 Silent p.V128V 0.40 TCGA-86-6851-01 12 30888056 30888056 G C CAPRIN2 Missense_Mutation p.Q219E 0.33 tolerated(0.28) benign(0.05) TCGA-86-6851-01 12 33559918 33559918 G T SYT10 Missense_Mutation p.L295I 0.09 tolerated(0.1) benign(0.047) TCGA-86-6851-01 12 34175383 34175383 G A ALG10 5'UTR 0.25 TCGA-86-6851-01 12 3702309 3702309 G C PRMT8 Silent p.L382L 0.16 TCGA-86-6851-01 12 40677725 40677725 A T LRRK2 Missense_Mutation p.S764C 0.28 tolerated(0.05) possibly_damaging(0.548) TCGA-86-6851-01 12 42854219 42854219 G C PRICKLE1 Missense_Mutation p.Q630E 0.11 tolerated(0.13) possibly_damaging(0.561) TCGA-86-6851-01 12 43828094 43828094 G T ADAMTS20 Missense_Mutation p.L892I 0.35 tolerated(0.12) benign(0.283) TCGA-86-6851-01 12 46244208 46244208 G T ARID2 Missense_Mutation p.V768L 0.20 deleterious_low_confidence(0.01) benign(0.022) TCGA-86-6851-01 12 49432103 49432103 C A KMT2D Silent p.L3012L 0.16 TCGA-86-6851-01 12 52093524 52093525 - T SCN8A Frame_Shift_Ins p.E294* 0.21 TCGA-86-6851-01 12 52306269 52306269 G A ACVRL1 Missense_Mutation p.G4D 0.26 tolerated_low_confidence(0.72) benign(0.001) TCGA-86-6851-01 12 52758745 52758745 C T KRT85 Splice_Site p.X210_splice 0.17 TCGA-86-6851-01 12 53203200 53203200 G A KRT4 Silent p.D267D 0.07 TCGA-86-6851-01 12 54802689 54802689 G A ITGA5 Silent p.A211A 0.07 TCGA-86-6851-01 12 57324168 57324168 C T SDR9C7 Silent p.L134L 0.25 TCGA-86-6851-01 12 57662768 57662768 C A R3HDM2 Missense_Mutation p.R590S 0.09 deleterious(0.03) probably_damaging(0.997) TCGA-86-6851-01 12 57872980 57872980 G A ARHGAP9 Silent p.P70P 0.09 TCGA-86-6851-01 12 6458494 6458494 T A SCNN1A Missense_Mutation p.S539C 0.32 deleterious(0.02) possibly_damaging(0.879) TCGA-86-6851-01 12 64587833 64587833 T C C12orf66 Missense_Mutation p.N376S 0.25 tolerated(0.8) possibly_damaging(0.518) TCGA-86-6851-01 12 69653891 69653891 T C CPSF6 Silent p.S461S 0.17 TCGA-86-6851-01 12 71029518 71029518 A T PTPRB Missense_Mutation p.H128Q 0.23 tolerated_low_confidence(0.13) possibly_damaging(0.854) TCGA-86-6851-01 12 71078512 71078512 C A PTPRR Missense_Mutation p.S444I 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-86-6851-01 12 72335394 72335394 G T TPH2 Missense_Mutation p.D46Y 0.18 deleterious(0.01) benign(0.355) TCGA-86-6851-01 12 72355426 72355426 C A TPH2 Intron 0.20 TCGA-86-6851-01 12 7848269 7848269 C - GDF3 Frame_Shift_Del p.G19Afs*17 0.17 TCGA-86-6851-01 12 78542673 78542673 A G NAV3 Missense_Mutation p.T1587A 0.31 tolerated(0.7) probably_damaging(0.998) TCGA-86-6851-01 12 86199574 86199574 C T RASSF9 Missense_Mutation p.G72R 0.16 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 12 91347470 91347470 G T CCER1 Missense_Mutation p.N350K 0.22 tolerated(0.28) unknown(0) TCGA-86-6851-01 13 101755661 101755661 A T NALCN Silent p.P973P 0.19 TCGA-86-6851-01 13 102030938 102030938 C - NALCN Frame_Shift_Del p.V120Ffs*13 0.15 TCGA-86-6851-01 13 112722023 112722023 G C SOX1 Missense_Mutation p.Q17H 0.25 tolerated(0.06) benign(0.34) TCGA-86-6851-01 13 113481158 113481158 G T ATP11A Nonsense_Mutation p.E392* 0.16 TCGA-86-6851-01 13 113771128 113771128 G T F7 Missense_Mutation p.S207I 0.12 tolerated(0.09) benign(0.374) TCGA-86-6851-01 13 113772915 113772915 A T F7 Missense_Mutation p.T332S 0.15 deleterious(0.02) possibly_damaging(0.692) TCGA-86-6851-01 13 113893788 113893788 G T CUL4A Missense_Mutation p.A320S 0.31 tolerated(1) benign(0.005) TCGA-86-6851-01 13 41768245 41768245 A G KBTBD7 Missense_Mutation p.L50P 0.41 deleterious(0) possibly_damaging(0.878) TCGA-86-6851-01 13 41933096 41933097 - G NAA16 Frame_Shift_Ins 0.24 TCGA-86-6851-01 13 46549882 46549882 C A ZC3H13 Silent p.V668V 0.27 TCGA-86-6851-01 13 46935586 46935586 G C KIAA0226L Missense_Mutation p.A370G 0.21 deleterious(0.02) benign(0.407) TCGA-86-6851-01 13 49951112 49951112 T C CAB39L Missense_Mutation p.I89M 0.38 tolerated(0.05) possibly_damaging(0.482) TCGA-86-6851-01 13 50062476 50062476 G C SETDB2 Missense_Mutation p.E555Q 0.11 tolerated(0.14) benign(0.113) TCGA-86-6851-01 13 52439669 52439669 G A CCDC70 Missense_Mutation p.R52H 0.10 deleterious(0.01) probably_damaging(0.917) TCGA-86-6851-01 13 52602898 52602898 C T UTP14C 5'UTR 0.24 TCGA-86-6851-01 13 53617354 53617354 T A OLFM4 Missense_Mutation p.S229T 0.26 tolerated(0.09) benign(0.269) TCGA-86-6851-01 13 74420040 74420040 T G KLF12 Silent p.T198T 0.17 TCGA-86-6851-01 13 76382280 76382280 G A LMO7 Missense_Mutation p.E388K 0.11 tolerated(0.07) benign(0.077) TCGA-86-6851-01 13 78492477 78492477 C - EDNRB Frame_Shift_Del p.A168Qfs*46 0.19 TCGA-86-6851-01 13 92560270 92560270 G T GPC5 Missense_Mutation p.V454L 0.19 tolerated(0.19) possibly_damaging(0.718) TCGA-86-6851-01 13 95131399 95131399 G T DCT Missense_Mutation p.N37K 0.27 tolerated(0.05) benign(0.001) TCGA-86-6851-01 13 99948198 99948198 G A GPR183 Missense_Mutation p.L68F 0.13 deleterious(0.01) probably_damaging(0.983) TCGA-86-6851-01 14 102028467 102028467 T A DIO3 Missense_Mutation p.S212T 0.22 tolerated(0.34) benign(0.042) TCGA-86-6851-01 14 105911775 105911775 G T MTA1 Missense_Mutation p.E39D 0.12 deleterious(0) probably_damaging(0.997) TCGA-86-6851-01 14 105924709 105924709 G T MTA1 Missense_Mutation p.R218L 0.20 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 14 106329427 106329427 G T IGHJ6 Silent p.T14T 0.20 TCGA-86-6851-01 14 106452807 106452807 G A IGHV1-2 Missense_Mutation p.P72L 0.16 deleterious(0.02) benign(0.076) TCGA-86-6851-01 14 106573267 106573267 C G IGHV3-11 Missense_Mutation p.R106T 0.04 tolerated_low_confidence(0.05) benign(0.176) TCGA-86-6851-01 14 106963363 106963363 C A IGHV1-45 Missense_Mutation p.D2Y 0.13 deleterious(0) probably_damaging(0.96) TCGA-86-6851-01 14 107034915 107034915 C G IGHV5-51 Missense_Mutation p.W55C 0.30 deleterious(0.02) benign(0.346) TCGA-86-6851-01 14 19378073 19378073 C A OR11H12 Silent p.V160V 0.06 TCGA-86-6851-01 14 20295688 20295688 C A OR4N2 Silent p.V27V 0.08 TCGA-86-6851-01 14 20344723 20344723 C A OR4K2 Silent p.T99T 0.17 TCGA-86-6851-01 14 20483114 20483114 G A OR4K14 Missense_Mutation p.P80L 0.10 deleterious(0) probably_damaging(1) TCGA-86-6851-01 14 21502328 21502328 G T RNASE13 Silent p.P40P 0.17 TCGA-86-6851-01 14 23847665 23847665 C T CMTM5 Silent p.A78A 0.14 TCGA-86-6851-01 14 26917911 26917911 C A NOVA1 Missense_Mutation p.G260C 0.08 deleterious(0) unknown(0) TCGA-86-6851-01 14 31381009 31381009 C T STRN3 Silent p.E524E 0.29 TCGA-86-6851-01 14 39644500 39644500 G A PNN Missense_Mutation p.R6K 0.25 tolerated(0.07) benign(0.122) TCGA-86-6851-01 14 39716500 39716500 C T MIA2 Missense_Mutation p.S241L 0.23 tolerated(0.11) benign(0.22) TCGA-86-6851-01 14 42356411 42356411 C A LRFN5 Missense_Mutation p.H195N 0.21 deleterious(0.04) possibly_damaging(0.756) TCGA-86-6851-01 14 47120508 47120508 G T RPL10L Missense_Mutation p.N144K 0.26 deleterious(0.04) possibly_damaging(0.711) TCGA-86-6851-01 14 47121027 47121027 C A RPL10L 5'UTR 0.30 TCGA-86-6851-01 14 52472512 52472512 G T NID2 Missense_Mutation p.P1354T 0.12 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 14 52534799 52534799 G T NID2 Missense_Mutation p.P104Q 0.21 deleterious(0) probably_damaging(0.952) TCGA-86-6851-01 14 52936794 52936794 C A TXNDC16 Missense_Mutation p.V527L 0.08 tolerated(0.36) benign(0.003) TCGA-86-6851-01 14 57699436 57699436 C A EXOC5 Missense_Mutation p.R296M 0.29 deleterious(0.01) possibly_damaging(0.744) TCGA-86-6851-01 14 62016430 62016430 G - PRKCH Frame_Shift_Del p.D645Tfs*5 0.28 TCGA-86-6851-01 14 64537540 64537540 A T SYNE2 Missense_Mutation p.S3537C 0.23 possibly_damaging(0.839) TCGA-86-6851-01 14 66028258 66028258 G T FUT8 5'UTR 0.32 TCGA-86-6851-01 14 70925550 70925550 C T ADAM21 Missense_Mutation p.A445V 0.37 tolerated(0.12) benign(0.029) TCGA-86-6851-01 14 72196853 72196853 G T SIPA1L1 Nonsense_Mutation p.E1587* 0.13 TCGA-86-6851-01 14 73464728 73464728 G C ZFYVE1 Nonsense_Mutation p.S260* 0.07 TCGA-86-6851-01 14 77734877 77734877 G T NGB Missense_Mutation p.L85M 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-86-6851-01 14 79434582 79434582 G T NRXN3 Missense_Mutation p.R639L 0.22 deleterious(0) possibly_damaging(0.855) TCGA-86-6851-01 14 81259284 81259284 C G CEP128 Silent p.R460R 0.09 TCGA-86-6851-01 14 88442730 88442730 C A GALC Nonsense_Mutation p.E242* 0.10 TCGA-86-6851-01 14 89068290 89068290 G C ZC3H14 Missense_Mutation p.M459I 0.12 tolerated(0.27) benign(0.026) TCGA-86-6851-01 14 90650636 90650636 C T KCNK13 Silent p.P172P 0.24 TCGA-86-6851-01 14 91338578 91338578 C A RPS6KA5 Missense_Mutation p.S750I 0.16 tolerated(0.06) probably_damaging(0.944) TCGA-86-6851-01 14 93650126 93650126 C A MOAP1 Missense_Mutation p.Q154H 0.25 tolerated(0.11) benign(0.029) TCGA-86-6851-01 14 93719992 93719992 C - BTBD7 Splice_Site p.X584_splice 0.24 TCGA-86-6851-01 14 94756466 94756466 G T SERPINA10 Missense_Mutation p.N155K 0.11 deleterious(0) possibly_damaging(0.849) TCGA-86-6851-01 14 95786176 95786176 C T CLMN 5'UTR 0.46 TCGA-86-6851-01 14 95932342 95932342 C A SYNE3 Missense_Mutation p.G185W 0.25 deleterious(0) probably_damaging(0.973) TCGA-86-6851-01 15 101024836 101024836 G C CERS3 Missense_Mutation p.T109R 0.29 deleterious(0.01) probably_damaging(0.975) TCGA-86-6851-01 15 20488826 20488826 G T CHEK2P2 RNA 0.06 TCGA-86-6851-01 15 20658886 20658886 C T HERC2P3 RNA 0.05 TCGA-86-6851-01 15 22332556 22332556 C A RP11-69H14.6 RNA 0.07 TCGA-86-6851-01 15 25432711 25432711 T G SNORD115-10 RNA 0.18 TCGA-86-6851-01 15 25462490 25462490 G T SNORD115-27 5'Flank 0.28 TCGA-86-6851-01 15 25490538 25490538 G C SNORD115-40 3'Flank 0.15 TCGA-86-6851-01 15 35529573 35529573 C A ANP32AP1 RNA 0.15 TCGA-86-6851-01 15 42298308 42298308 C A PLA2G4E Missense_Mutation p.E135D 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-86-6851-01 15 42600445 42600445 C G GANC Missense_Mutation p.F217L 0.19 benign(0.13) TCGA-86-6851-01 15 43724817 43724817 C A TP53BP1 Missense_Mutation p.G1084C 0.24 tolerated(0.06) possibly_damaging(0.669) TCGA-86-6851-01 15 44097238 44097238 C T MFAP1 3'UTR 0.19 TCGA-86-6851-01 15 45007761 45007761 G T B2M Nonsense_Mutation p.E70* 0.16 TCGA-86-6851-01 15 48936936 48936936 G - FBN1 Frame_Shift_Del p.L11Wfs*7 0.16 TCGA-86-6851-01 15 49044594 49044594 C A CEP152 Nonsense_Mutation p.G1140* 0.18 TCGA-86-6851-01 15 52877008 52877008 C G FAM214A Missense_Mutation p.R1004T 0.18 tolerated(0.22) benign(0.066) TCGA-86-6851-01 15 54685257 54685257 G T UNC13C Missense_Mutation p.Q1575H 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.639) TCGA-86-6851-01 15 63955365 63955365 T A HERC1 Missense_Mutation p.S2907C 0.27 benign(0.376) TCGA-86-6851-01 15 64426924 64426924 A T SNX1 Missense_Mutation p.Q428L 0.20 tolerated(0.09) benign(0.331) TCGA-86-6851-01 15 65041311 65041311 C A RBPMS2 Missense_Mutation p.R102S 0.16 deleterious(0) probably_damaging(0.954) TCGA-86-6851-01 15 65744362 65744362 C A DPP8 Missense_Mutation p.D800Y 0.23 deleterious(0.01) probably_damaging(0.974) TCGA-86-6851-01 15 70991943 70991943 C A UACA Silent p.G45G 0.14 TCGA-86-6851-01 15 71329670 71329670 A G LRRC49 Missense_Mutation p.E624G 0.20 deleterious(0.01) possibly_damaging(0.879) TCGA-86-6851-01 15 72648940 72648940 T C HEXA Missense_Mutation p.E91G 0.35 tolerated(0.3) benign(0.003) TCGA-86-6851-01 15 72954782 72954782 T A GOLGA6B Missense_Mutation p.L346H 0.17 deleterious(0) benign(0.15) TCGA-86-6851-01 15 74703307 74703307 C G SEMA7A Missense_Mutation p.K553N 0.10 tolerated(0.61) benign(0.061) TCGA-86-6851-01 15 75980924 75980924 C G CSPG4 Missense_Mutation p.A828P 0.14 tolerated(0.13) benign(0.014) TCGA-86-6851-01 15 78486874 78486874 G T ACSBG1 Missense_Mutation p.R143S 0.17 deleterious(0.01) probably_damaging(0.995) TCGA-86-6851-01 15 79051871 79051871 T A ADAMTS7 Silent p.L1651L 0.22 TCGA-86-6851-01 15 79090375 79090375 C G ADAMTS7 Missense_Mutation p.Q179H 0.25 deleterious(0.05) benign(0.208) TCGA-86-6851-01 15 80767527 80767527 G T ARNT2 Silent p.L195L 0.25 TCGA-86-6851-01 15 81615245 81615245 C T STARD5 Silent p.G48G 0.22 TCGA-86-6851-01 15 83226674 83226674 G T CPEB1 Missense_Mutation p.P148T 0.13 tolerated_low_confidence(0.06) benign(0.009) TCGA-86-6851-01 15 88680741 88680741 C A NTRK3 Missense_Mutation p.Q172H 0.32 tolerated(0.05) probably_damaging(0.971) TCGA-86-6851-01 15 91423431 91423431 A G FURIN Missense_Mutation p.Y495C 0.15 deleterious(0.02) probably_damaging(0.996) TCGA-86-6851-01 15 93015532 93015532 T A C15orf32 Missense_Mutation p.W52R 0.16 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-86-6851-01 15 98995109 98995109 T A FAM169B Silent p.P105P 0.21 TCGA-86-6851-01 15 99250831 99250831 G T IGF1R Missense_Mutation p.Q45H 0.21 tolerated(0.05) benign(0.065) TCGA-86-6851-01 15 99901651 99901651 A G LRRC28 Missense_Mutation p.H269R 0.28 tolerated(0.61) benign(0.001) TCGA-86-6851-01 16 101609 101609 C G POLR3K Missense_Mutation p.D50H 0.09 deleterious(0.02) possibly_damaging(0.895) TCGA-86-6851-01 16 111616 111616 G A RHBDF1 Silent p.P429P 0.34 TCGA-86-6851-01 16 14355224 14355224 C G MKL2 Missense_Mutation p.P1025A 0.09 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 16 1479269 1479269 G T C16orf91 Nonsense_Mutation p.S26* 0.06 TCGA-86-6851-01 16 20043246 20043246 C A GPR139 Silent p.R291R 0.24 TCGA-86-6851-01 16 20565129 20565129 C A ACSM2B Missense_Mutation p.S237I 0.07 deleterious(0) probably_damaging(1) TCGA-86-6851-01 16 21261469 21261469 C A ANKS4B Missense_Mutation p.F194L 0.26 tolerated(1) benign(0.025) TCGA-86-6851-01 16 21730494 21730494 G T OTOA Missense_Mutation p.R557M 0.25 tolerated(0.21) possibly_damaging(0.853) TCGA-86-6851-01 16 22326444 22326444 G T POLR3E Missense_Mutation p.R186L 0.26 deleterious(0.01) benign(0.434) TCGA-86-6851-01 16 29997020 29997020 C T TAOK2 Silent p.A610A 0.18 TCGA-86-6851-01 16 30389945 30389945 C G SEPT1 Missense_Mutation p.E340Q 0.17 possibly_damaging(0.8) TCGA-86-6851-01 16 31339510 31339510 G T ITGAM Silent p.L918L 0.29 TCGA-86-6851-01 16 31391338 31391338 A T ITGAX Silent p.A1004A 0.09 TCGA-86-6851-01 16 3142715 3142715 G T ZSCAN10 Missense_Mutation p.P20Q 0.21 deleterious(0) probably_damaging(1) TCGA-86-6851-01 16 3639743 3639743 C A SLX4 Missense_Mutation p.R1299M 0.12 deleterious(0.01) possibly_damaging(0.784) TCGA-86-6851-01 16 4385127 4385127 G A GLIS2 Missense_Mutation p.E197K 0.14 deleterious(0.02) possibly_damaging(0.888) TCGA-86-6851-01 16 4747383 4747383 C G ANKS3 Missense_Mutation p.M615I 0.08 deleterious_low_confidence(0.03) benign(0.013) TCGA-86-6851-01 16 49433132 49433132 C A C16orf78 Silent p.V247V 0.23 TCGA-86-6851-01 16 53501044 53501044 G T RBL2 Silent p.V646V 0.08 TCGA-86-6851-01 16 58073844 58073844 G A MMP15 Missense_Mutation p.R169H 0.32 tolerated(0.11) benign(0.005) TCGA-86-6851-01 16 67264340 67264340 G C FHOD1 Missense_Mutation p.F976L 0.10 deleterious(0.02) possibly_damaging(0.823) TCGA-86-6851-01 16 68156673 68156673 C T NFATC3 Missense_Mutation p.S296L 0.37 deleterious(0.01) possibly_damaging(0.613) TCGA-86-6851-01 16 70170214 70170214 C T PDPR Missense_Mutation p.S372F 0.11 deleterious(0.03) benign(0.014) TCGA-86-6851-01 16 81253762 81253762 G A PKD1L2 Nonsense_Mutation p.Q72* 0.35 TCGA-86-6851-01 16 830355 830355 G A MSLNL Missense_Mutation p.H216Y 0.28 possibly_damaging(0.607) TCGA-86-6851-01 16 9858247 9858247 G T GRIN2A Missense_Mutation p.L1052I 0.30 deleterious(0.04) possibly_damaging(0.741) TCGA-86-6851-01 17 10265707 10265707 G A MYH13 Silent p.L106L 0.08 TCGA-86-6851-01 17 10419569 10419569 C A MYH1 Nonsense_Mutation p.E99* 0.28 TCGA-86-6851-01 17 21146644 21146644 C A C17orf103 Silent p.L107L 0.09 TCGA-86-6851-01 17 2203274 2203274 C A SMG6 Missense_Mutation p.S258I 0.32 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-86-6851-01 17 27085330 27085330 T A FAM222B Silent p.T549T 0.24 TCGA-86-6851-01 17 29850980 29850980 A C RAB11FIP4 Missense_Mutation p.K367Q 0.18 deleterious(0) probably_damaging(0.973) TCGA-86-6851-01 17 3300867 3300867 C T OR1E1 Missense_Mutation p.V280M 0.23 tolerated(0.05) possibly_damaging(0.633) TCGA-86-6851-01 17 33501326 33501326 G T UNC45B Silent p.L634L 0.25 TCGA-86-6851-01 17 35310239 35310239 G T AATF Missense_Mutation p.G113C 0.18 deleterious(0) possibly_damaging(0.625) TCGA-86-6851-01 17 36478458 36478458 C T MRPL45 Nonsense_Mutation p.Q301* 0.27 TCGA-86-6851-01 17 37453402 37453402 C A FBXL20 Missense_Mutation p.G126W 0.12 deleterious(0) probably_damaging(0.943) TCGA-86-6851-01 17 3819461 3819461 C G P2RX1 Missense_Mutation p.R20P 0.34 deleterious(0) probably_damaging(1) TCGA-86-6851-01 17 39645944 39645944 C G KRT36 Missense_Mutation p.G58A 0.19 tolerated(1) benign(0.085) TCGA-86-6851-01 17 41895456 41895456 C A MPP3 Missense_Mutation p.A302S 0.25 tolerated(0.46) benign(0.019) TCGA-86-6851-01 17 42327755 42327755 G T SLC4A1 3'UTR 0.35 TCGA-86-6851-01 17 43111717 43111717 C A DCAKD Missense_Mutation p.V52F 0.19 tolerated(0.69) benign(0.009) TCGA-86-6851-01 17 43183001 43183001 A G NMT1 Silent p.L495L 0.21 TCGA-86-6851-01 17 48245032 48245033 - A SGCA Frame_Shift_Ins p.P83Hfs*22 0.15 TCGA-86-6851-01 17 48734068 48734068 G T ABCC3 Silent p.L76L 0.21 TCGA-86-6851-01 17 51902439 51902439 C T KIF2B 3'UTR 0.16 TCGA-86-6851-01 17 5335888 5335888 C G RPAIN 3'Flank 0.06 TCGA-86-6851-01 17 56348200 56348200 C T MPO Silent p.V685V 0.09 TCGA-86-6851-01 17 60821831 60821831 T C MARCH10 Silent p.T147T 0.23 TCGA-86-6851-01 17 61607588 61607588 G C KCNH6 Silent p.L148L 0.17 TCGA-86-6851-01 17 61949662 61949662 G C CSH2 Missense_Mutation p.R160G 0.20 deleterious(0.03) benign(0.08) TCGA-86-6851-01 17 61949663 61949663 G T CSH2 Silent p.R159R 0.20 TCGA-86-6851-01 17 6330023 6330023 C A AIPL1 Silent p.L232L 0.31 TCGA-86-6851-01 17 6358908 6358908 G A PITPNM3 Missense_Mutation p.S892L 0.17 deleterious(0.01) benign(0.041) TCGA-86-6851-01 17 64873633 64873633 C A CACNG5 Silent p.V61V 0.32 TCGA-86-6851-01 17 67047243 67047243 C A ABCA9 Missense_Mutation p.G9C 0.13 tolerated(0.4) benign(0.001) TCGA-86-6851-01 17 67190585 67190585 T G ABCA10 Missense_Mutation p.N429T 0.23 deleterious(0.01) benign(0.007) TCGA-86-6851-01 17 72518919 72518919 G T CD300LB Nonsense_Mutation p.Y225* 0.16 TCGA-86-6851-01 17 7257049 7257049 A G KCTD11 3'UTR 0.33 TCGA-86-6851-01 17 73055695 73055695 G C KCTD2 Missense_Mutation p.E211Q 0.08 deleterious(0.03) possibly_damaging(0.903) TCGA-86-6851-01 17 73662539 73662539 T C RECQL5 Silent p.L33L 0.28 TCGA-86-6851-01 17 74005011 74005011 G A EVPL Silent p.F1425F 0.16 TCGA-86-6851-01 17 7577507 7577507 T A TP53 Missense_Mutation p.E258D 0.45 deleterious(0) possibly_damaging(0.761) TCGA-86-6851-01 17 76565498 76565498 T A DNAH17 Missense_Mutation p.T386S 0.29 benign(0.003) TCGA-86-6851-01 17 79638803 79638803 G T CCDC137 Missense_Mutation p.R176L 0.07 deleterious(0) possibly_damaging(0.547) TCGA-86-6851-01 17 80320584 80320584 C T TEX19 3'UTR 0.33 TCGA-86-6851-01 17 8050243 8050243 G A PER1 Silent p.A569A 0.35 TCGA-86-6851-01 18 13885436 13885436 C A MC2R Nonsense_Mutation p.E28* 0.20 TCGA-86-6851-01 18 19996602 19996602 G A CTAGE1 Silent p.I391I 0.08 TCGA-86-6851-01 18 19996730 19996730 G T CTAGE1 Missense_Mutation p.Q349K 0.14 deleterious(0.05) possibly_damaging(0.687) TCGA-86-6851-01 18 22804767 22804767 C A ZNF521 Missense_Mutation p.G1039W 0.28 deleterious(0) probably_damaging(1) TCGA-86-6851-01 18 22804769 22804769 T A ZNF521 Missense_Mutation p.H1038L 0.28 deleterious(0) probably_damaging(0.996) TCGA-86-6851-01 18 321716 321716 C A COLEC12 Missense_Mutation p.D719Y 0.15 deleterious(0) probably_damaging(0.983) TCGA-86-6851-01 18 32455254 32455254 C A DTNA Missense_Mutation p.P512T 0.20 tolerated(0.07) benign(0.049) TCGA-86-6851-01 18 34298017 34298017 A C FHOD3 Missense_Mutation p.Q744P 0.17 tolerated(0.24) benign(0) TCGA-86-6851-01 18 47101900 47101900 G T LIPG Missense_Mutation p.G245W 0.23 deleterious(0) probably_damaging(1) TCGA-86-6851-01 18 47511162 47511162 C G MYO5B Missense_Mutation p.G291A 0.21 deleterious(0) probably_damaging(1) TCGA-86-6851-01 18 56414758 56414758 G T MALT1 Missense_Mutation p.G720V 0.19 deleterious(0.01) possibly_damaging(0.764) TCGA-86-6851-01 18 61390628 61390628 C - SERPINB11 Frame_Shift_Del p.*393Nfs*? 0.21 TCGA-86-6851-01 18 70209247 70209247 C A CBLN2 Missense_Mutation p.R50L 0.25 tolerated_low_confidence(0.37) possibly_damaging(0.726) TCGA-86-6851-01 19 11832562 11832562 C A ZNF823 Missense_Mutation p.R596L 0.27 deleterious(0.04) benign(0.132) TCGA-86-6851-01 19 1623968 1623968 C A TCF3 Silent p.P177P 0.33 TCGA-86-6851-01 19 17476209 17476209 C A PLVAP Silent p.R355R 0.25 TCGA-86-6851-01 19 20117282 20117282 A G ZNF682 Silent p.C343C 0.32 TCGA-86-6851-01 19 29215191 29215191 T A AC005307.3 RNA 0.19 TCGA-86-6851-01 19 30314607 30314607 G T CCNE1 Missense_Mutation p.A386S 0.13 tolerated(0.89) benign(0.003) TCGA-86-6851-01 19 30936469 30936469 G T ZNF536 Missense_Mutation p.G667V 0.33 tolerated(0.06) benign(0.093) TCGA-86-6851-01 19 31039909 31039909 G T ZNF536 Missense_Mutation p.S1128I 0.26 deleterious_low_confidence(0.03) benign(0.043) TCGA-86-6851-01 19 36353928 36353928 G T KIRREL2 Missense_Mutation p.R572L 0.19 tolerated(0.31) benign(0.031) TCGA-86-6851-01 19 36940320 36940320 T C ZNF566 Silent p.R273R 0.13 TCGA-86-6851-01 19 37854289 37854289 G T HKR1 Missense_Mutation p.G531V 0.31 deleterious(0) probably_damaging(0.992) TCGA-86-6851-01 19 38899419 38899419 G T FAM98C Missense_Mutation p.G316V 0.10 deleterious(0) probably_damaging(1) TCGA-86-6851-01 19 39591247 39591247 C A PAPL Missense_Mutation p.F219L 0.25 deleterious(0) probably_damaging(0.998) TCGA-86-6851-01 19 39924008 39924008 C A RPS16 Missense_Mutation p.D116Y 0.17 deleterious(0) probably_damaging(0.933) TCGA-86-6851-01 19 39924009 39924009 A T RPS16 Nonsense_Mutation p.Y115* 0.16 TCGA-86-6851-01 19 39924010 39924010 T A RPS16 Missense_Mutation p.Y115F 0.17 tolerated(0.18) probably_damaging(0.918) TCGA-86-6851-01 19 40739398 40739398 T C AKT2 3'UTR 0.12 TCGA-86-6851-01 19 40739399 40739399 C T AKT2 3'UTR 0.11 TCGA-86-6851-01 19 41445035 41445035 G T CYP2B7P Splice_Site 0.17 TCGA-86-6851-01 19 42131976 42131976 G T CEACAM4 Missense_Mutation p.H141Q 0.18 deleterious(0.05) benign(0.029) TCGA-86-6851-01 19 42584394 42584394 A T ZNF574 Missense_Mutation p.T546S 0.21 deleterious(0.02) possibly_damaging(0.874) TCGA-86-6851-01 19 42813653 42813653 G T PRR19 5'UTR 0.19 TCGA-86-6851-01 19 42855448 42855448 C T MEGF8 Silent p.A872A 0.36 TCGA-86-6851-01 19 44570336 44570336 A G ZNF223 Missense_Mutation p.I119V 0.30 tolerated(0.25) benign(0.027) TCGA-86-6851-01 19 44679961 44679961 G C ZNF226 Missense_Mutation p.Q182H 0.22 tolerated(0.26) benign(0.444) TCGA-86-6851-01 19 45976352 45976352 G C FOSB 3'UTR 0.12 TCGA-86-6851-01 19 48511980 48511980 A G ELSPBP1 Missense_Mutation p.Y19C 0.26 tolerated(0.18) benign(0.001) TCGA-86-6851-01 19 48525588 48525588 T G ELSPBP1 3'UTR 0.24 TCGA-86-6851-01 19 50332242 50332242 G T MED25 Silent p.R140R 0.17 TCGA-86-6851-01 19 51228646 51228646 G T CLEC11A Silent p.A298A 0.36 TCGA-86-6851-01 19 51920552 51920552 T C SIGLEC10 Missense_Mutation p.K69E 0.30 tolerated(0.9) benign(0.008) TCGA-86-6851-01 19 51983926 51983926 A T CEACAM18 Missense_Mutation p.E192V 0.20 tolerated(0.07) benign(0.299) TCGA-86-6851-01 19 52825580 52825580 A G ZNF480 Silent p.V359V 0.11 TCGA-86-6851-01 19 537086 537086 G T CDC34 Missense_Mutation p.V146L 0.16 deleterious(0.03) benign(0.046) TCGA-86-6851-01 19 54234308 54234308 G A MIR518A1 RNA 0.34 TCGA-86-6851-01 19 54444782 54444782 G T CACNG7 Missense_Mutation p.M161I 0.11 tolerated(0.39) benign(0.216) TCGA-86-6851-01 19 54783326 54783326 G T LILRB2 Missense_Mutation p.R178S 0.20 deleterious(0) benign(0.244) TCGA-86-6851-01 19 55085572 55085572 C A LILRA2 Missense_Mutation p.Q22K 0.21 deleterious(0.01) possibly_damaging(0.546) TCGA-86-6851-01 19 55316358 55316358 T C KIR2DL4 Missense_Mutation p.Y63H 0.26 tolerated(1) benign(0.033) TCGA-86-6851-01 19 55421391 55421391 C G NCR1 Missense_Mutation p.N216K 0.21 tolerated(0.47) benign(0.131) TCGA-86-6851-01 19 56416458 56416458 G T NLRP13 Nonsense_Mutation p.S823* 0.13 TCGA-86-6851-01 19 56490764 56490764 G T NLRP8 Nonsense_Mutation p.E961* 0.10 TCGA-86-6851-01 19 56973772 56973772 G T ZNF667 5'UTR 0.34 TCGA-86-6851-01 19 57176294 57176295 - T ZNF835 Frame_Shift_Ins p.E92Gfs*5 0.12 TCGA-86-6851-01 19 57665718 57665718 A T DUXA 3'UTR 0.25 TCGA-86-6851-01 19 57666724 57666724 C T DUXA Missense_Mutation p.R152Q 0.25 tolerated(0.13) benign(0.024) TCGA-86-6851-01 19 57666732 57666732 G T DUXA Missense_Mutation p.F149L 0.28 deleterious(0.01) benign(0.046) TCGA-86-6851-01 19 58420783 58420783 C A ZNF417 Missense_Mutation p.R288L 0.21 deleterious(0) probably_damaging(0.98) TCGA-86-6851-01 19 58491351 58491351 G A ZNF606 Nonsense_Mutation p.Q233* 0.08 TCGA-86-6851-01 19 624806 624806 C G POLRMT Silent p.V351V 0.30 TCGA-86-6851-01 19 7805510 7805510 A G CD209 3'UTR 0.50 TCGA-86-6851-01 19 7997545 7997545 C A TIMM44 Missense_Mutation p.Q318H 0.36 tolerated(0.53) benign(0.103) TCGA-86-6851-01 19 8175977 8175977 C A FBN3 Missense_Mutation p.G1392V 0.26 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 1 10032090 10032090 G T NMNAT1 5'UTR 0.07 TCGA-86-6851-01 1 100327041 100327041 C T AGL Intron 0.12 TCGA-86-6851-01 1 103444295 103444295 C A COL11A1 Missense_Mutation p.G908V 0.11 unknown(0) TCGA-86-6851-01 1 110584481 110584481 T A STRIP1 Missense_Mutation p.L295M 0.13 tolerated(0.07) probably_damaging(0.94) TCGA-86-6851-01 1 111826722 111826722 C A CHIAP2 RNA 0.19 TCGA-86-6851-01 1 11333531 11333531 C T UBIAD1 5'UTR 0.21 TCGA-86-6851-01 1 117311432 117311432 A - CD2 3'UTR 0.20 TCGA-86-6851-01 1 118596629 118596629 A T SPAG17 Missense_Mutation p.L937H 0.15 deleterious(0) probably_damaging(1) TCGA-86-6851-01 1 119965095 119965095 G A HSD3B2 Missense_Mutation p.S324N 0.12 deleterious(0) possibly_damaging(0.69) TCGA-86-6851-01 1 120351466 120351466 G T REG4 5'UTR 0.36 TCGA-86-6851-01 1 120438236 120438236 G T ADAM30 Missense_Mutation p.Q242K 0.29 tolerated(0.15) benign(0.192) TCGA-86-6851-01 1 120458793 120458793 C A NOTCH2 Missense_Mutation p.L2184F 0.19 tolerated(0.47) possibly_damaging(0.649) TCGA-86-6851-01 1 12725977 12725977 G T AADACL4 Missense_Mutation p.R152L 0.23 deleterious(0.02) probably_damaging(0.98) TCGA-86-6851-01 1 12885040 12885040 G A PRAMEF11 Silent p.N357N 0.06 TCGA-86-6851-01 1 144866652 144866652 T C PDE4DIP Missense_Mutation p.I1864V 0.13 tolerated(0.56) benign(0.024) TCGA-86-6851-01 1 144931223 144931223 G T PDE4DIP Intron 0.18 TCGA-86-6851-01 1 146759402 146759402 G T CHD1L Silent p.G770G 0.12 TCGA-86-6851-01 1 148932857 148932857 C A RP11-14N7.2 RNA 0.06 TCGA-86-6851-01 1 149885321 149885321 C T SV2A Silent p.K24K 0.16 TCGA-86-6851-01 1 152058087 152058087 C A TCHHL1 Nonsense_Mutation p.G691* 0.16 TCGA-86-6851-01 1 152192096 152192096 C T HRNR Missense_Mutation p.G670E 0.33 unknown(0) TCGA-86-6851-01 1 152770363 152770363 T G LCE1D Silent p.P31P 0.58 TCGA-86-6851-01 1 154163707 154163707 C T TPM3 Silent p.K66K 0.05 TCGA-86-6851-01 1 155104004 155104004 G T EFNA1 Silent p.R94R 0.42 TCGA-86-6851-01 1 156268966 156268966 C A VHLL Silent p.A5A 0.25 TCGA-86-6851-01 1 1563448 1563448 G T MIB2 Missense_Mutation p.G692V 0.24 tolerated(0.13) benign(0.029) TCGA-86-6851-01 1 157773730 157773730 G A FCRL1 Missense_Mutation p.A75V 0.25 tolerated(0.1) benign(0.035) TCGA-86-6851-01 1 158368842 158368842 T G OR10T2 Missense_Mutation p.K139Q 0.11 tolerated(0.32) benign(0.013) TCGA-86-6851-01 1 158516985 158516985 G T OR6Y1 Missense_Mutation p.A304E 0.22 tolerated(1) benign(0.001) TCGA-86-6851-01 1 158587833 158587833 C A SPTA1 Missense_Mutation p.D2182Y 0.24 deleterious(0) probably_damaging(0.984) TCGA-86-6851-01 1 158687493 158687493 G T OR6K3 Missense_Mutation p.P138H 0.35 tolerated(0.07) benign(0.111) TCGA-86-6851-01 1 160141191 160141191 G T ATP1A4 Missense_Mutation p.A548S 0.37 tolerated(0.13) possibly_damaging(0.667) TCGA-86-6851-01 1 161011976 161011976 C A USF1 Missense_Mutation p.G69V 0.27 deleterious(0) probably_damaging(0.998) TCGA-86-6851-01 1 161198044 161198044 C T TOMM40L Missense_Mutation p.H185Y 0.28 deleterious(0.01) probably_damaging(0.96) TCGA-86-6851-01 1 16350360 16350360 C A CLCNKA Missense_Mutation p.L56I 0.16 deleterious(0.01) benign(0.413) TCGA-86-6851-01 1 164769120 164769120 A T PBX1 Missense_Mutation p.D232V 0.21 deleterious(0) probably_damaging(0.984) TCGA-86-6851-01 1 167095909 167095909 G T DUSP27 Missense_Mutation p.R514M 0.30 deleterious(0) possibly_damaging(0.599) TCGA-86-6851-01 1 169510154 169510154 G A F5 Missense_Mutation p.P1392S 0.16 tolerated_low_confidence(0.67) unknown(0) TCGA-86-6851-01 1 169525938 169525938 C A F5 Missense_Mutation p.V300L 0.30 deleterious(0.01) benign(0.167) TCGA-86-6851-01 1 174200322 174200322 C T RABGAP1L Missense_Mutation p.P124L 0.15 tolerated(0.35) benign(0.001) TCGA-86-6851-01 1 175067500 175067500 C A TNN Silent p.R630R 0.36 TCGA-86-6851-01 1 175087694 175087694 C A TNN Intron 0.33 TCGA-86-6851-01 1 175097288 175097288 A T TNN Missense_Mutation p.T1056S 0.30 tolerated(0.17) benign(0.006) TCGA-86-6851-01 1 177199149 177199149 A T BRINP2 Missense_Mutation p.H46L 0.31 tolerated_low_confidence(0.15) benign(0.003) TCGA-86-6851-01 1 17721512 17721512 C A PADI6 RNA 0.30 TCGA-86-6851-01 1 181741305 181741305 C T CACNA1E Missense_Mutation p.R1693C 0.20 deleterious(0.01) possibly_damaging(0.898) TCGA-86-6851-01 1 181741320 181741320 C A CACNA1E Missense_Mutation p.L1698M 0.13 deleterious(0.02) possibly_damaging(0.887) TCGA-86-6851-01 1 182026967 182026967 G T ZNF648 Missense_Mutation p.P60Q 0.31 tolerated_low_confidence(0.89) benign(0.001) TCGA-86-6851-01 1 185939528 185939528 G A HMCN1 Silent p.K758K 0.26 TCGA-86-6851-01 1 186064471 186064471 C G HMCN1 Missense_Mutation p.A3464G 0.35 benign(0.077) TCGA-86-6851-01 1 190203575 190203575 G T BRINP3 Nonsense_Mutation p.C217* 0.14 TCGA-86-6851-01 1 19610580 19610580 C T AKR7A3 Silent p.V248V 0.11 TCGA-86-6851-01 1 196670456 196670456 C T CFH Intron 0.10 TCGA-86-6851-01 1 196711060 196711060 G A CFH Silent p.K1004K 0.07 TCGA-86-6851-01 1 196749016 196749016 C A CFHR3 Missense_Mutation p.H115N 0.21 tolerated(1) benign(0.018) TCGA-86-6851-01 1 197025021 197025021 T C F13B Missense_Mutation p.N393S 0.24 tolerated(0.5) benign(0.018) TCGA-86-6851-01 1 201196296 201196296 G T IGFN1 Silent p.T3691T 0.19 TCGA-86-6851-01 1 203680134 203680134 G T ATP2B4 Silent p.R643R 0.12 TCGA-86-6851-01 1 204438211 204438211 C G PIK3C2B Missense_Mutation p.L240F 0.11 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-86-6851-01 1 204589036 204589036 A T LRRN2 Missense_Mutation p.C29S 0.26 deleterious(0) unknown(0) TCGA-86-6851-01 1 204943892 204943892 C A NFASC Missense_Mutation p.T500N 0.14 deleterious(0) probably_damaging(0.977) TCGA-86-6851-01 1 205628320 205628320 C A SLC45A3 3'UTR 0.13 TCGA-86-6851-01 1 21042034 21042034 C G KIF17 Missense_Mutation p.Q110H 0.10 tolerated(0.06) benign(0.053) TCGA-86-6851-01 1 21072078 21072078 G A HP1BP3 Missense_Mutation p.S442L 0.09 deleterious_low_confidence(0.04) benign(0.052) TCGA-86-6851-01 1 212988354 212988354 G T TATDN3 Splice_Site p.X235_splice 0.25 TCGA-86-6851-01 1 214184904 214184904 G T PROX1 Missense_Mutation p.S625I 0.11 deleterious(0) probably_damaging(0.995) TCGA-86-6851-01 1 216243601 216243601 C A USH2A Missense_Mutation p.R1964L 0.28 benign(0.069) TCGA-86-6851-01 1 216405433 216405433 G T USH2A Nonsense_Mutation p.S952* 0.21 TCGA-86-6851-01 1 220091911 220091911 G A SLC30A10 Intron 0.21 TCGA-86-6851-01 1 220153525 220153525 C A EPRS Missense_Mutation p.V1205F 0.27 deleterious(0) probably_damaging(0.972) TCGA-86-6851-01 1 220160553 220160553 G C EPRS Missense_Mutation p.S990C 0.11 deleterious(0.02) benign(0.195) TCGA-86-6851-01 1 230372467 230372467 A T GALNT2 Silent p.R201R 0.14 TCGA-86-6851-01 1 2317245 2317245 C A MORN1 Splice_Site p.X150_splice 0.24 TCGA-86-6851-01 1 237540734 237540734 T A RYR2 Nonsense_Mutation p.L192* 0.16 TCGA-86-6851-01 1 237753237 237753237 C A RYR2 Missense_Mutation p.T1248N 0.15 possibly_damaging(0.696) TCGA-86-6851-01 1 237753238 237753238 C A RYR2 Silent p.T1248T 0.17 TCGA-86-6851-01 1 237791243 237791243 C A RYR2 Silent p.A2101A 0.23 TCGA-86-6851-01 1 237794803 237794803 G T RYR2 Nonsense_Mutation p.E2173* 0.18 TCGA-86-6851-01 1 238048716 238048716 G A ZP4 Missense_Mutation p.P379S 0.15 tolerated(0.21) possibly_damaging(0.706) TCGA-86-6851-01 1 240071253 240071253 T A CHRM3 Missense_Mutation p.F168I 0.14 deleterious(0) possibly_damaging(0.883) TCGA-86-6851-01 1 240072433 240072433 G T CHRM3 Missense_Mutation p.C561F 0.26 deleterious(0) probably_damaging(0.993) TCGA-86-6851-01 1 240256545 240256545 G A FMN2 Missense_Mutation p.G379E 0.31 unknown(0) TCGA-86-6851-01 1 240371184 240371184 T A FMN2 Silent p.P1024P 0.13 TCGA-86-6851-01 1 242161836 242161836 G A MAP1LC3C Silent p.T67T 0.15 TCGA-86-6851-01 1 2428140 2428140 G T PLCH2 Nonsense_Mutation p.E617* 0.69 TCGA-86-6851-01 1 247587966 247587966 C A NLRP3 Silent p.T407T 0.19 TCGA-86-6851-01 1 247587984 247587984 G T NLRP3 Silent p.L413L 0.21 TCGA-86-6851-01 1 247694809 247694809 C A OR2C3 3'UTR 0.29 TCGA-86-6851-01 1 248458172 248458172 C A OR2T12 Missense_Mutation p.A237S 0.16 tolerated(0.06) benign(0.344) TCGA-86-6851-01 1 248616358 248616358 T A OR2T2 Missense_Mutation p.L87Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 1 248616602 248616602 C A OR2T2 Silent p.P168P 0.13 TCGA-86-6851-01 1 248636724 248636724 G A OR2T3 Missense_Mutation p.E25K 0.15 tolerated(0.07) benign(0.038) TCGA-86-6851-01 1 248813817 248813817 G T OR2T27 Nonsense_Mutation p.Y123* 0.28 TCGA-86-6851-01 1 26644547 26644547 C A CD52 Silent p.L13L 0.12 TCGA-86-6851-01 1 33799778 33799778 A T PHC2 Missense_Mutation p.N557K 0.12 deleterious(0) benign(0.171) TCGA-86-6851-01 1 33945118 33945118 T C ZSCAN20 Missense_Mutation p.C77R 0.11 tolerated(0.14) probably_damaging(1) TCGA-86-6851-01 1 33945119 33945119 G T ZSCAN20 Missense_Mutation p.C77F 0.10 deleterious(0) probably_damaging(1) TCGA-86-6851-01 1 34276415 34276415 G T CSMD2 Missense_Mutation p.P419T 0.18 deleterious(0.01) probably_damaging(1) TCGA-86-6851-01 1 35884120 35884120 T C ZMYM4 Silent p.T1462T 0.12 TCGA-86-6851-01 1 36349034 36349034 A T AGO1 Silent p.G4G 0.17 TCGA-86-6851-01 1 37979099 37979099 T C MEAF6 Missense_Mutation p.E44G 0.22 deleterious(0) probably_damaging(0.994) TCGA-86-6851-01 1 39851375 39851375 G C MACF1 Silent p.L2644L 0.13 TCGA-86-6851-01 1 40362941 40362941 C A MYCL 3'UTR 0.28 TCGA-86-6851-01 1 40723841 40723841 C G ZMPSTE24 5'UTR 0.07 TCGA-86-6851-01 1 42048667 42048667 T C HIVEP3 Missense_Mutation p.Y601C 0.35 possibly_damaging(0.907) TCGA-86-6851-01 1 45292685 45292685 C A PTCH2 Missense_Mutation p.V862L 0.09 deleterious(0) benign(0.024) TCGA-86-6851-01 1 45407298 45407298 C A EIF2B3 Missense_Mutation p.V112F 0.18 deleterious(0) benign(0.235) TCGA-86-6851-01 1 45798843 45798843 C A MUTYH Splice_Site p.X127_splice 0.18 TCGA-86-6851-01 1 45962293 45962293 G A CCDC163P Nonsense_Mutation p.Q89* 0.40 TCGA-86-6851-01 1 50666530 50666530 C A ELAVL4 Missense_Mutation p.P278T 0.13 deleterious(0.02) probably_damaging(0.988) TCGA-86-6851-01 1 50666531 50666531 C A ELAVL4 Missense_Mutation p.P278Q 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-86-6851-01 1 51767347 51767347 T C TTC39A Missense_Mutation p.H321R 0.31 deleterious(0) probably_damaging(0.915) TCGA-86-6851-01 1 52301822 52301822 C T NRD1 Silent p.L299L 0.23 TCGA-86-6851-01 1 52824708 52824708 G A CC2D1B Silent p.R416R 0.25 TCGA-86-6851-01 1 57333306 57333306 C G C8A Silent p.P34P 0.13 TCGA-86-6851-01 1 63789224 63789224 C G FOXD3 Missense_Mutation p.S165R 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-86-6851-01 1 6635262 6635262 G T TAS1R1 Missense_Mutation p.W357L 0.18 tolerated(0.61) benign(0.063) TCGA-86-6851-01 1 68153577 68153577 G C GADD45A 3'UTR 0.30 TCGA-86-6851-01 1 7527927 7527927 C T CAMTA1 Missense_Mutation p.P159L 0.14 deleterious(0) probably_damaging(0.995) TCGA-86-6851-01 1 75672357 75672357 C A SLC44A5 Missense_Mutation p.V699L 0.31 deleterious(0) benign(0.017) TCGA-86-6851-01 1 78034024 78034024 C A ZZZ3 Missense_Mutation p.G820V 0.11 deleterious(0) probably_damaging(1) TCGA-86-6851-01 1 84668407 84668407 A T PRKACB Silent p.L275L 0.14 TCGA-86-6851-01 1 84680000 84680000 G T PRKACB Missense_Mutation p.K357N 0.12 deleterious(0.04) possibly_damaging(0.545) TCGA-86-6851-01 1 85547082 85547082 T G WDR63 Missense_Mutation p.V90G 0.26 deleterious(0) benign(0.421) TCGA-86-6851-01 1 86289273 86289273 C A COL24A1 Splice_Site p.X1246_splice 0.13 TCGA-86-6851-01 1 86453338 86453338 C A COL24A1 Splice_Site p.X771_splice 0.16 TCGA-86-6851-01 1 86898153 86898153 T C CLCA2 Missense_Mutation p.I229T 0.26 deleterious(0) possibly_damaging(0.486) TCGA-86-6851-01 1 89848344 89848344 G T GBP6 Missense_Mutation p.S425I 0.19 tolerated(0.52) benign(0.004) TCGA-86-6851-01 1 90178811 90178811 G C LRRC8C Missense_Mutation p.G228R 0.10 tolerated(0.16) possibly_damaging(0.621) TCGA-86-6851-01 1 9188741 9188741 G A GPR157 Missense_Mutation p.R116C 0.10 tolerated(0.19) benign(0.007) TCGA-86-6851-01 1 91979544 91979544 G - CDC7 Frame_Shift_Del p.G288Efs*18 0.26 TCGA-86-6851-01 1 94670703 94670703 G C ARHGAP29 Missense_Mutation p.S204C 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-86-6851-01 1 9613776 9613776 A G SLC25A33 Missense_Mutation p.Y50C 0.31 tolerated(0.21) probably_damaging(0.974) TCGA-86-6851-01 1 979595 979595 G T AGRN Silent p.P702P 0.20 TCGA-86-6851-01 20 21376454 21376454 G A NKX2-4 3'UTR 0.31 TCGA-86-6851-01 20 21494372 21494372 C A NKX2-2 5'UTR 0.29 TCGA-86-6851-01 20 25394423 25394423 T C GINS1 Intron 0.12 TCGA-86-6851-01 20 25472120 25472120 C A NINL Missense_Mutation p.R451L 0.18 deleterious(0.05) benign(0.362) TCGA-86-6851-01 20 29992817 29992817 A G DEFB121 Missense_Mutation p.C44R 0.17 deleterious(0) probably_damaging(0.951) TCGA-86-6851-01 20 30411373 30411373 A T MYLK2 Missense_Mutation p.E289V 0.22 deleterious(0) benign(0.147) TCGA-86-6851-01 20 30659562 30659562 G T HCK Missense_Mutation p.D54Y 0.21 deleterious(0) probably_damaging(0.997) TCGA-86-6851-01 20 30898583 30898583 A T KIF3B Missense_Mutation p.N335Y 0.19 deleterious(0) probably_damaging(0.979) TCGA-86-6851-01 20 31827694 31827694 G A BPIFA1 Missense_Mutation p.G136S 0.28 tolerated(0.22) benign(0.106) TCGA-86-6851-01 20 34021970 34021970 C A GDF5 Missense_Mutation p.D415Y 0.29 deleterious(0) probably_damaging(0.975) TCGA-86-6851-01 20 34292397 34292397 C A RBM39 3'UTR 0.19 TCGA-86-6851-01 20 35350115 35350115 C A NDRG3 Missense_Mutation p.Q8H 0.26 tolerated(0.09) possibly_damaging(0.779) TCGA-86-6851-01 20 43034763 43034763 G C HNF4A Missense_Mutation p.A61P 0.09 deleterious(0) probably_damaging(0.979) TCGA-86-6851-01 20 44505942 44505942 G C ZSWIM3 Missense_Mutation p.V249L 0.28 deleterious(0) probably_damaging(0.998) TCGA-86-6851-01 20 44567961 44567961 G T PCIF1 Missense_Mutation p.G78W 0.21 deleterious(0) probably_damaging(0.998) TCGA-86-6851-01 20 4705237 4705237 T A PRND Missense_Mutation p.C14S 0.32 deleterious_low_confidence(0.02) benign(0.036) TCGA-86-6851-01 20 47267939 47267939 C A PREX1 Missense_Mutation p.A884S 0.18 tolerated(0.11) possibly_damaging(0.766) TCGA-86-6851-01 20 47273692 47273692 G T PREX1 Missense_Mutation p.S670Y 0.17 deleterious(0.01) probably_damaging(0.955) TCGA-86-6851-01 20 49626434 49626434 G T KCNG1 Missense_Mutation p.Q148K 0.36 tolerated(0.43) benign(0.301) TCGA-86-6851-01 20 50292705 50292705 C A ATP9A Missense_Mutation p.R281L 0.20 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 20 51873022 51873022 G T TSHZ2 Missense_Mutation p.V1009L 0.23 deleterious(0) probably_damaging(0.997) TCGA-86-6851-01 20 52645173 52645173 C A BCAS1 Missense_Mutation p.D161Y 0.12 deleterious(0.02) possibly_damaging(0.68) TCGA-86-6851-01 20 52645175 52645175 T G BCAS1 Missense_Mutation p.Q160P 0.12 tolerated(0.24) benign(0.002) TCGA-86-6851-01 20 56098847 56098847 G T CTCFL Missense_Mutation p.Q139K 0.22 tolerated(0.1) possibly_damaging(0.507) TCGA-86-6851-01 20 56137200 56137200 A G PCK1 Missense_Mutation p.R100G 0.11 tolerated(0.07) possibly_damaging(0.556) TCGA-86-6851-01 20 56227368 56227368 A C PMEPA1 Missense_Mutation p.L202R 0.18 tolerated(0.34) possibly_damaging(0.812) TCGA-86-6851-01 20 57466789 57466789 G A GNAS Intron 0.36 TCGA-86-6851-01 20 60737876 60737876 G T SS18L1 Missense_Mutation p.G149W 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.885) TCGA-86-6851-01 20 60737878 60737878 G T SS18L1 Silent p.G149G 0.19 TCGA-86-6851-01 20 60994713 60994713 T C RBBP8NL 5'UTR 0.19 TCGA-86-6851-01 20 61453473 61453473 G T COL9A3 Missense_Mutation p.G145V 0.19 deleterious(0) unknown(0) TCGA-86-6851-01 20 62122089 62122089 C T EEF1A2 Splice_Site p.X258_splice 0.27 TCGA-86-6851-01 21 10934082 10934082 C A TPTE Missense_Mutation p.V299F 0.12 deleterious(0) probably_damaging(0.93) TCGA-86-6851-01 21 11012979 11012979 G A TPTE RNA 0.12 TCGA-86-6851-01 21 11012980 11012980 G T TPTE Intron 0.12 TCGA-86-6851-01 21 18924196 18924196 G C CXADR Missense_Mutation p.D114H 0.09 deleterious(0.02) probably_damaging(1) TCGA-86-6851-01 21 30441752 30441752 C G CCT8 Missense_Mutation p.E75Q 0.10 deleterious(0.03) benign(0.427) TCGA-86-6851-01 21 32526583 32526583 C T TIAM1 Silent p.T1051T 0.14 TCGA-86-6851-01 21 44283572 44283572 T G WDR4 Missense_Mutation p.H144P 0.15 deleterious(0) probably_damaging(0.986) TCGA-86-6851-01 21 45861640 45861640 C G TRPM2 Silent p.L1484L 0.32 TCGA-86-6851-01 21 46687515 46687515 C G POFUT2 Missense_Mutation p.A376P 0.18 deleterious(0.02) benign(0.034) TCGA-86-6851-01 22 19175534 19175534 C G CLTCL1 Missense_Mutation p.E1465Q 0.05 tolerated(0.08) probably_damaging(0.981) TCGA-86-6851-01 22 22782367 22782367 C A IGLV5-37 Missense_Mutation p.A122D 0.31 deleterious(0) possibly_damaging(0.554) TCGA-86-6851-01 22 24039355 24039355 C A RGL4 Intron 0.30 TCGA-86-6851-01 22 26423548 26423548 C A MYO18B Missense_Mutation p.D2536E 0.35 tolerated(0.36) benign(0.238) TCGA-86-6851-01 22 30736319 30736319 G T SF3A1 Missense_Mutation p.P414H 0.45 deleterious(0) probably_damaging(0.998) TCGA-86-6851-01 22 38696770 38696770 C A CSNK1E Missense_Mutation p.G175V 0.26 deleterious_low_confidence(0) benign(0.176) TCGA-86-6851-01 22 39709261 39709261 T C RPL3 Missense_Mutation p.I368V 0.21 tolerated(0.07) benign(0.035) TCGA-86-6851-01 22 39817853 39817853 C T TAB1 Silent p.I266I 0.17 TCGA-86-6851-01 22 40139765 40139765 C T ENTHD1 Missense_Mutation p.M581I 0.12 tolerated(0.7) benign(0.001) TCGA-86-6851-01 22 40757222 40757222 G T ADSL Intron 0.31 TCGA-86-6851-01 22 41489047 41489047 C G EP300 Silent p.A13A 0.05 TCGA-86-6851-01 22 43821208 43821208 G T MPPED1 Missense_Mutation p.V73L 0.38 tolerated(0.08) possibly_damaging(0.466) TCGA-86-6851-01 22 45595905 45595905 G T KIAA0930 Missense_Mutation p.F293L 0.22 tolerated(0.08) possibly_damaging(0.608) TCGA-86-6851-01 22 45923784 45923784 G C FBLN1 Missense_Mutation p.E127Q 0.25 deleterious(0.01) probably_damaging(0.952) TCGA-86-6851-01 22 50280622 50280622 G A ZBED4 Nonsense_Mutation p.W1104* 0.30 TCGA-86-6851-01 2 103095483 103095483 A C SLC9A4 Missense_Mutation p.T148P 0.29 deleterious(0.03) benign(0.109) TCGA-86-6851-01 2 111431931 111431931 G A BUB1 Missense_Mutation p.A13V 0.28 deleterious(0.02) benign(0.024) TCGA-86-6851-01 2 113588914 113588914 G T IL1B Nonsense_Mutation p.Y184* 0.25 TCGA-86-6851-01 2 113676314 113676314 C G IL37 Missense_Mutation p.N195K 0.18 tolerated(1) benign(0.002) TCGA-86-6851-01 2 125284963 125284963 A T CNTNAP5 Missense_Mutation p.I526F 0.12 deleterious(0.03) probably_damaging(0.961) TCGA-86-6851-01 2 128707786 128707786 C G SAP130 Missense_Mutation p.K899N 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.88) TCGA-86-6851-01 2 130951770 130951770 G T TUBA3E Silent p.R215R 0.18 TCGA-86-6851-01 2 130951938 130951938 C A TUBA3E Silent p.V159V 0.25 TCGA-86-6851-01 2 131176649 131176649 T C FAR2P2 RNA 0.38 TCGA-86-6851-01 2 132274507 132274507 G A AC093838.4 RNA 0.19 TCGA-86-6851-01 2 135206372 135206372 G T MGAT5 Missense_Mutation p.R727L 0.25 deleterious(0) probably_damaging(1) TCGA-86-6851-01 2 138169276 138169276 T A THSD7B Nonsense_Mutation p.Y931* 0.20 TCGA-86-6851-01 2 141773396 141773396 G T LRP1B Missense_Mutation p.Q687K 0.16 benign(0.149) TCGA-86-6851-01 2 1418272 1418272 G T TPO Missense_Mutation p.W31L 0.35 tolerated(0.19) benign(0.164) TCGA-86-6851-01 2 152292047 152292048 - T RIF1 Frame_Shift_Ins p.V384Cfs*50 0.20 TCGA-86-6851-01 2 160806229 160806229 T A PLA2R1 Missense_Mutation p.D1200V 0.25 deleterious(0.01) probably_damaging(0.986) TCGA-86-6851-01 2 160964216 160964216 C G ITGB6 Missense_Mutation p.E748Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 2 164467883 164467883 C A FIGN Silent p.G153G 0.12 TCGA-86-6851-01 2 166229750 166229750 T A SCN2A Missense_Mutation p.L1289I 0.22 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 2 166246119 166246119 G T SCN2A Missense_Mutation p.D1935Y 0.14 deleterious(0.01) possibly_damaging(0.837) TCGA-86-6851-01 2 168103862 168103862 C A XIRP2 Missense_Mutation p.A1987E 0.12 benign(0.067) TCGA-86-6851-01 2 168103880 168103880 G A XIRP2 Missense_Mutation p.G1993E 0.28 benign(0.009) TCGA-86-6851-01 2 168104711 168104711 C G XIRP2 Missense_Mutation p.S2270C 0.17 probably_damaging(0.922) TCGA-86-6851-01 2 170058194 170058194 A T LRP2 Missense_Mutation p.I2799N 0.22 possibly_damaging(0.603) TCGA-86-6851-01 2 170092507 170092507 A T LRP2 Missense_Mutation p.M1588K 0.23 benign(0.158) TCGA-86-6851-01 2 170367183 170367183 G A KLHL41 Missense_Mutation p.G299R 0.15 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 2 170417034 170417034 T C FASTKD1 Silent p.L278L 0.24 TCGA-86-6851-01 2 173352066 173352066 C A ITGA6 Missense_Mutation p.P682H 0.09 deleterious(0) benign(0.162) TCGA-86-6851-01 2 174131331 174131331 T C MLTK Silent p.T752T 0.25 TCGA-86-6851-01 2 174131332 174131332 G T MLTK Missense_Mutation p.D753Y 0.25 deleterious_low_confidence(0.01) benign(0.309) TCGA-86-6851-01 2 177054838 177054838 G T HOXD1 Missense_Mutation p.G319C 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.818) TCGA-86-6851-01 2 179466465 179466465 C A TTN Missense_Mutation p.R18451L 0.16 TCGA-86-6851-01 2 179554591 179554591 C - TTN Frame_Shift_Del p.E10599Kfs*26 0.23 TCGA-86-6851-01 2 179594220 179594220 T A TTN Missense_Mutation p.E6221D 0.30 TCGA-86-6851-01 2 179658174 179658174 A T TTN Missense_Mutation p.V498E 0.10 TCGA-86-6851-01 2 179979965 179979965 T A SESTD1 Missense_Mutation p.R556W 0.26 deleterious(0) probably_damaging(0.947) TCGA-86-6851-01 2 183053759 183053759 G T PDE1A Missense_Mutation p.P401Q 0.26 deleterious(0.02) benign(0.426) TCGA-86-6851-01 2 183291405 183291405 C G PDE1A Intron 0.25 TCGA-86-6851-01 2 185731213 185731213 A G ZNF804A Missense_Mutation p.N77D 0.14 deleterious(0) possibly_damaging(0.576) TCGA-86-6851-01 2 186672285 186672285 G T FSIP2 Silent p.V6173V 0.17 TCGA-86-6851-01 2 187627079 187627079 C A FAM171B Silent p.P670P 0.20 TCGA-86-6851-01 2 18766101 18766101 G T NT5C1B Silent p.P194P 0.10 TCGA-86-6851-01 2 189917697 189917697 T A COL5A2 Silent p.G867G 0.23 TCGA-86-6851-01 2 190340074 190340074 G - WDR75 Frame_Shift_Del p.L808Ffs*9 0.21 TCGA-86-6851-01 2 190670501 190670501 A G PMS1 Intron 0.06 TCGA-86-6851-01 2 1926164 1926164 C A MYT1L Missense_Mutation p.R459S 0.17 deleterious(0.02) possibly_damaging(0.669) TCGA-86-6851-01 2 200136964 200136964 C T SATB2 Silent p.K724K 0.16 TCGA-86-6851-01 2 206659578 206659578 C A NRP2 Silent p.P864P 0.14 TCGA-86-6851-01 2 211525226 211525226 G T CPS1 Missense_Mutation p.L1264F 0.19 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 2 21251391 21251391 T A APOB Missense_Mutation p.Q546L 0.22 benign(0.412) TCGA-86-6851-01 2 218947967 218947967 T C RUFY4 Missense_Mutation p.L517S 0.13 deleterious(0.02) benign(0.195) TCGA-86-6851-01 2 219128507 219128507 G A GPBAR1 3'UTR 0.39 TCGA-86-6851-01 2 220039790 220039790 C A CNPPD1 Missense_Mutation p.V101L 0.31 tolerated(0.14) possibly_damaging(0.45) TCGA-86-6851-01 2 220149365 220149365 G T DNAJB2 Missense_Mutation p.D211Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 2 220401832 220401832 C G ASIC4 Missense_Mutation p.S533C 0.07 deleterious(0) probably_damaging(0.969) TCGA-86-6851-01 2 220404244 220404244 C A CHPF Missense_Mutation p.R730L 0.12 deleterious(0.02) benign(0.061) TCGA-86-6851-01 2 228560738 228560738 G C SLC19A3 Missense_Mutation p.L347V 0.32 tolerated(0.07) probably_damaging(0.956) TCGA-86-6851-01 2 231775329 231775329 T G GPR55 Missense_Mutation p.M117L 0.29 tolerated(1) benign(0) TCGA-86-6851-01 2 234677057 234677057 G T UGT1A10 Missense_Mutation p.A423S 0.21 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 2 237076108 237076108 C T GBX2 Silent p.T169T 0.39 TCGA-86-6851-01 2 238305434 238305434 T A COL6A3 Missense_Mutation p.L9F 0.28 benign(0.033) TCGA-86-6851-01 2 238785925 238785925 G T RAMP1 Nonsense_Mutation p.E38* 0.12 TCGA-86-6851-01 2 239237914 239237914 G C TRAF3IP1 Silent p.V282V 0.07 TCGA-86-6851-01 2 240969652 240969652 G T OR6B2 Silent p.S65S 0.12 TCGA-86-6851-01 2 240969653 240969653 G T OR6B2 Missense_Mutation p.S65Y 0.09 deleterious(0.02) benign(0.092) TCGA-86-6851-01 2 242195624 242195624 C T HDLBP Missense_Mutation p.R283H 0.11 tolerated(0.06) benign(0.06) TCGA-86-6851-01 2 242690681 242690681 A G D2HGDH Missense_Mutation p.I340V 0.34 tolerated(0.29) benign(0.052) TCGA-86-6851-01 2 24413446 24413446 C A FAM228A Silent p.G189G 0.29 TCGA-86-6851-01 2 24533223 24533223 G C ITSN2 Missense_Mutation p.L195V 0.29 tolerated(0.73) possibly_damaging(0.548) TCGA-86-6851-01 2 24949555 24949555 A G NCOA1 Missense_Mutation p.I899M 0.13 tolerated(0.59) benign(0.001) TCGA-86-6851-01 2 27001193 27001193 G T SLC35F6 Silent p.L310L 0.11 TCGA-86-6851-01 2 31147103 31147103 T A GALNT14 Missense_Mutation p.K426M 0.15 tolerated(0.22) possibly_damaging(0.873) TCGA-86-6851-01 2 33412009 33412009 T A LTBP1 Missense_Mutation p.C430S 0.36 deleterious(0) possibly_damaging(0.77) TCGA-86-6851-01 2 33488390 33488390 C A LTBP1 Missense_Mutation p.P850T 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-86-6851-01 2 3691331 3691331 C A COLEC11 Missense_Mutation p.R161S 0.20 tolerated(0.09) possibly_damaging(0.794) TCGA-86-6851-01 2 3691332 3691332 G C COLEC11 Missense_Mutation p.R161P 0.20 deleterious(0) probably_damaging(0.995) TCGA-86-6851-01 2 39487871 39487871 C A MAP4K3 Silent p.L728L 0.33 TCGA-86-6851-01 2 40405545 40405545 C G SLC8A1 Missense_Mutation p.E633Q 0.13 tolerated(0.13) benign(0.003) TCGA-86-6851-01 2 42488304 42488304 A G EML4 Missense_Mutation p.K128E 0.50 tolerated(0.59) benign(0.066) TCGA-86-6851-01 2 46986566 46986566 G C SOCS5 Silent p.L299L 0.25 TCGA-86-6851-01 2 50463932 50463932 G T NRXN1 Missense_Mutation p.H1221N 0.34 deleterious(0.01) benign(0.064) TCGA-86-6851-01 2 50780095 50780095 C A NRXN1 Missense_Mutation p.M503I 0.15 tolerated(0.4) benign(0.196) TCGA-86-6851-01 2 54080865 54080865 C A GPR75 Missense_Mutation p.Q343H 0.35 tolerated_low_confidence(0.11) benign(0.02) TCGA-86-6851-01 2 55471275 55471275 C G MTIF2 Missense_Mutation p.D401H 0.07 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 2 63832413 63832413 G C MDH1 Splice_Site p.X244_splice 0.19 TCGA-86-6851-01 2 71360643 71360645 TTT - MPHOSPH10 In_Frame_Del p.F237del 0.33 TCGA-86-6851-01 2 74273589 74273589 G C TET3 Missense_Mutation p.W47S 0.11 deleterious(0) possibly_damaging(0.858) TCGA-86-6851-01 2 74593378 74593378 G A DCTN1 Missense_Mutation p.P918L 0.30 tolerated(0.14) benign(0.071) TCGA-86-6851-01 2 74753908 74753908 C A AUP1 3'UTR 0.19 TCGA-86-6851-01 2 76975980 76975980 G T LRRTM4 Nonsense_Mutation p.C538* 0.30 TCGA-86-6851-01 2 79313623 79313623 C A REG1B Missense_Mutation p.C64F 0.17 deleterious(0) possibly_damaging(0.824) TCGA-86-6851-01 2 79363119 79363119 G T REG1P RNA 0.22 TCGA-86-6851-01 2 79363120 79363120 G T REG1P RNA 0.22 TCGA-86-6851-01 2 79878723 79878723 C A CTNNA2 Missense_Mutation p.P14H 0.18 deleterious(0) probably_damaging(0.998) TCGA-86-6851-01 2 85893739 85893739 C A SFTPB Splice_Site p.X143_splice 0.35 TCGA-86-6851-01 2 87017548 87017548 C G CD8A Silent p.L102L 0.06 TCGA-86-6851-01 2 89082259 89082259 C G ANKRD36BP2 RNA 0.19 TCGA-86-6851-01 2 89157056 89157056 G T IGKC Missense_Mutation p.Q48K 0.20 tolerated(0.65) benign(0.016) TCGA-86-6851-01 2 89417042 89417042 T C IGKV1-17 Missense_Mutation p.S48G 0.27 deleterious(0.01) possibly_damaging(0.594) TCGA-86-6851-01 2 90139503 90139503 G T IGKV1D-16 Missense_Mutation p.D92Y 0.20 deleterious(0) possibly_damaging(0.819) TCGA-86-6851-01 2 90249169 90249169 C A IGKV1D-43 Missense_Mutation p.T42N 0.11 deleterious(0.01) benign(0.341) TCGA-86-6851-01 2 9531320 9531320 C A ASAP2 Missense_Mutation p.S838Y 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-86-6851-01 2 95713808 95713808 C A MAL Silent p.T66T 0.26 TCGA-86-6851-01 2 95847751 95847751 C T ZNF2 Missense_Mutation p.T393M 0.26 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 2 96795583 96795583 C A ASTL Missense_Mutation p.G285V 0.19 tolerated_low_confidence(0.21) benign(0.063) TCGA-86-6851-01 2 99976814 99976814 C T EIF5B Nonsense_Mutation p.Q51* 0.16 TCGA-86-6851-01 2 99988139 99988139 G A EIF5B Missense_Mutation p.D500N 0.12 benign(0.321) TCGA-86-6851-01 3 100356151 100356151 G A GPR128 Silent p.K201K 0.10 TCGA-86-6851-01 3 100374023 100374023 G T GPR128 Missense_Mutation p.W575L 0.19 deleterious(0.03) possibly_damaging(0.715) TCGA-86-6851-01 3 10146187 10146187 G A FANCD2OS Missense_Mutation p.P91L 0.26 deleterious(0) benign(0.004) TCGA-86-6851-01 3 108568088 108568088 C A TRAT1 Missense_Mutation p.T97N 0.22 tolerated(0.25) benign(0.332) TCGA-86-6851-01 3 108723721 108723721 A T MORC1 Silent p.A676A 0.25 TCGA-86-6851-01 3 11072886 11072886 C G SLC6A1 Silent p.L449L 0.03 TCGA-86-6851-01 3 112358068 112358068 C A CCDC80 Nonsense_Mutation p.E229* 0.25 TCGA-86-6851-01 3 121376180 121376180 T C HCLS1 Missense_Mutation p.E35G 0.21 deleterious(0) benign(0.403) TCGA-86-6851-01 3 121433816 121433816 G C GOLGB1 Silent p.L432L 0.13 TCGA-86-6851-01 3 122591347 122591347 C G DIRC2 Silent p.V408V 0.19 TCGA-86-6851-01 3 122873846 122873846 G T PDIA5 Silent p.P434P 0.26 TCGA-86-6851-01 3 12845083 12845083 G T CAND2 Silent p.R55R 0.43 TCGA-86-6851-01 3 130095164 130095164 C A COL6A5 Missense_Mutation p.T51K 0.23 tolerated(0.09) possibly_damaging(0.629) TCGA-86-6851-01 3 133647523 133647523 C T C3orf36 Missense_Mutation p.G42E 0.27 tolerated_low_confidence(1) benign(0.001) TCGA-86-6851-01 3 134851709 134851709 G T EPHB1 Missense_Mutation p.R372L 0.25 tolerated(0.23) probably_damaging(0.944) TCGA-86-6851-01 3 134885845 134885845 C A EPHB1 Silent p.R586R 0.11 TCGA-86-6851-01 3 140689777 140689777 G C SLC25A36 Missense_Mutation p.A132P 0.20 deleterious(0) possibly_damaging(0.629) TCGA-86-6851-01 3 140997196 140997196 C T ACPL2 Missense_Mutation p.P31L 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-86-6851-01 3 142841199 142841199 C A CHST2 Missense_Mutation p.P514H 0.24 tolerated(0.06) possibly_damaging(0.652) TCGA-86-6851-01 3 142985603 142985603 C A SLC9A9 Missense_Mutation p.G627C 0.21 deleterious(0) probably_damaging(0.964) TCGA-86-6851-01 3 146233732 146233732 G C PLSCR1 3'UTR 0.17 TCGA-86-6851-01 3 147131357 147131357 G T ZIC1 3'UTR 0.23 TCGA-86-6851-01 3 150384672 150384672 G T FAM194A Missense_Mutation p.R544S 0.25 tolerated(0.11) benign(0.242) TCGA-86-6851-01 3 150931206 150931206 T A P2RY14 Missense_Mutation p.Q300L 0.25 tolerated(0.18) benign(0.003) TCGA-86-6851-01 3 157823666 157823666 C T SHOX2 Missense_Mutation p.D50N 0.30 tolerated_low_confidence(0.07) possibly_damaging(0.493) TCGA-86-6851-01 3 164724727 164724727 G T SI Missense_Mutation p.T1428N 0.38 tolerated(0.27) benign(0.004) TCGA-86-6851-01 3 164737505 164737505 G T SI Nonsense_Mutation p.S1103* 0.11 TCGA-86-6851-01 3 164786549 164786549 G T SI Missense_Mutation p.F148L 0.21 tolerated(1) benign(0) TCGA-86-6851-01 3 164906813 164906813 C T SLITRK3 Silent p.V602V 0.24 TCGA-86-6851-01 3 164906974 164906974 C G SLITRK3 Missense_Mutation p.E549Q 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-86-6851-01 3 169587549 169587549 G C LRRC31 Missense_Mutation p.P16R 0.11 tolerated(0.06) benign(0.015) TCGA-86-6851-01 3 170216537 170216537 C A SLC7A14 Silent p.V226V 0.19 TCGA-86-6851-01 3 171830326 171830326 G T FNDC3B Silent p.L19L 0.20 TCGA-86-6851-01 3 171965348 171965348 G T FNDC3B Missense_Mutation p.R97L 0.20 deleterious(0) probably_damaging(1) TCGA-86-6851-01 3 172474909 172474909 G C ECT2 Missense_Mutation p.R147T 0.05 deleterious(0.03) probably_damaging(0.997) TCGA-86-6851-01 3 179605484 179605484 C A PEX5L Missense_Mutation p.R96M 0.18 deleterious_low_confidence(0) possibly_damaging(0.882) TCGA-86-6851-01 3 184001646 184001646 A T ECE2 Missense_Mutation p.E415V 0.13 tolerated(0.1) benign(0.01) TCGA-86-6851-01 3 185252583 185252583 C A LIPH Missense_Mutation p.M129I 0.32 tolerated(0.18) benign(0) TCGA-86-6851-01 3 185307917 185307917 A G SENP2 Silent p.T39T 0.33 TCGA-86-6851-01 3 186335114 186335114 A T AHSG Missense_Mutation p.E183V 0.23 tolerated(1) benign(0.002) TCGA-86-6851-01 3 192517414 192517414 C A MB21D2 Missense_Mutation p.K79N 0.31 deleterious(0.01) possibly_damaging(0.477) TCGA-86-6851-01 3 19295220 19295220 G T KCNH8 Nonsense_Mutation p.E51* 0.31 TCGA-86-6851-01 3 193201780 193201780 G C ATP13A4 Silent p.L251L 0.09 TCGA-86-6851-01 3 196386747 196386747 A T NRROS Missense_Mutation p.Q78L 0.31 tolerated(1) benign(0.001) TCGA-86-6851-01 3 33195367 33195367 T A SUSD5 Missense_Mutation p.I253F 0.22 tolerated(0.61) benign(0.303) TCGA-86-6851-01 3 38438570 38438570 C T XYLB Missense_Mutation p.A453V 0.20 deleterious(0) probably_damaging(0.956) TCGA-86-6851-01 3 38797302 38797302 C G SCN10A Missense_Mutation p.D480H 0.04 tolerated(0.07) benign(0.322) TCGA-86-6851-01 3 40211460 40211460 G T MYRIP Missense_Mutation p.S250I 0.42 deleterious(0.02) possibly_damaging(0.819) TCGA-86-6851-01 3 44763714 44763714 G T ZNF502 Missense_Mutation p.G469W 0.41 deleterious(0.01) probably_damaging(1) TCGA-86-6851-01 3 45714995 45714995 G T LIMD1 Nonsense_Mutation p.E608* 0.23 TCGA-86-6851-01 3 52524743 52524743 C A NISCH Silent p.T1212T 0.22 TCGA-86-6851-01 3 52649423 52649423 T C PBRM1 Missense_Mutation p.K623R 0.24 tolerated(0.35) benign(0.195) TCGA-86-6851-01 3 62118337 62118337 A G PTPRG Missense_Mutation p.H226R 0.39 tolerated(1) probably_damaging(0.95) TCGA-86-6851-01 3 65456114 65456114 A T MAGI1 Nonsense_Mutation p.L268* 0.29 TCGA-86-6851-01 3 65456115 65456115 A G MAGI1 Silent p.L268L 0.28 TCGA-86-6851-01 3 7340513 7340513 G T GRM7 Splice_Site p.X293_splice 0.27 TCGA-86-6851-01 3 9055201 9055201 G T SRGAP3 Missense_Mutation p.D646E 0.24 tolerated(0.17) probably_damaging(0.998) TCGA-86-6851-01 3 9074378 9074378 A T SRGAP3 Missense_Mutation p.Y499N 0.21 tolerated(0.07) benign(0.001) TCGA-86-6851-01 3 93603635 93603635 C A PROS1 Missense_Mutation p.V477F 0.28 tolerated(0.14) benign(0.053) TCGA-86-6851-01 3 9515147 9515147 G T SETD5 Missense_Mutation p.E1141D 0.28 deleterious(0.05) benign(0.017) TCGA-86-6851-01 3 97454805 97454805 G T EPHA6 Missense_Mutation p.A991S 0.18 tolerated(0.11) probably_damaging(0.998) TCGA-86-6851-01 3 98109831 98109831 G C OR5K3 Missense_Mutation p.E108Q 0.22 tolerated(0.13) possibly_damaging(0.616) TCGA-86-6851-01 4 109969332 109969332 C A COL25A1 Splice_Site p.X138_splice 0.35 TCGA-86-6851-01 4 121966809 121966809 T C NDNF Missense_Mutation p.K62E 0.53 deleterious(0.01) benign(0.309) TCGA-86-6851-01 4 134084345 134084345 G T PCDH10 Missense_Mutation p.G1004V 0.38 deleterious(0) probably_damaging(1) TCGA-86-6851-01 4 13604345 13604345 C A BOD1L1 Silent p.V1393V 0.23 TCGA-86-6851-01 4 155156222 155156222 C G DCHS2 Missense_Mutation p.E2739D 0.15 tolerated(0.1) benign(0.037) TCGA-86-6851-01 4 156763423 156763423 G T ASIC5 Nonsense_Mutation p.C315* 0.33 TCGA-86-6851-01 4 159753234 159753234 G C FNIP2 Silent p.L166L 0.14 TCGA-86-6851-01 4 171010812 171010812 C G AADAT Silent p.A10A 0.25 TCGA-86-6851-01 4 175223237 175223237 C G CEP44 Missense_Mutation p.S46C 0.10 tolerated(0.16) probably_damaging(0.971) TCGA-86-6851-01 4 178274629 178274629 G T NEIL3 Nonsense_Mutation p.E403* 0.47 TCGA-86-6851-01 4 185309905 185309905 C A IRF2 3'UTR 0.23 TCGA-86-6851-01 4 187003533 187003533 C G TLR3 Silent p.V231V 0.15 TCGA-86-6851-01 4 20525666 20525666 A T SLIT2 Missense_Mutation p.D435V 0.17 deleterious(0) probably_damaging(0.998) TCGA-86-6851-01 4 20541151 20541151 T C SLIT2 Silent p.N640N 0.16 TCGA-86-6851-01 4 30724559 30724559 C G PCDH7 Missense_Mutation p.I505M 0.30 deleterious(0) probably_damaging(0.994) TCGA-86-6851-01 4 36195225 36195225 C A ARAP2 Missense_Mutation p.S511I 0.26 deleterious(0) benign(0.446) TCGA-86-6851-01 4 39255635 39255635 T C WDR19 Missense_Mutation p.Y996H 0.06 tolerated(0.1) probably_damaging(0.909) TCGA-86-6851-01 4 42403163 42403163 C A SHISA3 Missense_Mutation p.L138I 0.11 tolerated(0.38) probably_damaging(0.998) TCGA-86-6851-01 4 42487601 42487601 C A ATP8A1 Missense_Mutation p.G746W 0.22 deleterious(0) probably_damaging(1) TCGA-86-6851-01 4 44177021 44177021 G - KCTD8 Frame_Shift_Del p.P403Hfs*32 0.17 TCGA-86-6851-01 4 46053441 46053441 C A GABRG1 Silent p.S377S 0.29 TCGA-86-6851-01 4 47427936 47427936 C A GABRB1 Missense_Mutation p.D442E 0.17 tolerated(0.16) benign(0.196) TCGA-86-6851-01 4 52860965 52860965 C A LRRC66 Silent p.G741G 0.31 TCGA-86-6851-01 4 57221417 57221417 C A AASDH Missense_Mutation p.G345V 0.35 deleterious(0) probably_damaging(1) TCGA-86-6851-01 4 57221579 57221579 G A AASDH Missense_Mutation p.T291I 0.43 deleterious(0) probably_damaging(0.996) TCGA-86-6851-01 4 62599255 62599255 C T LPHN3 Missense_Mutation p.P393L 0.22 tolerated(0.1) benign(0.232) TCGA-86-6851-01 4 68566807 68566807 G A UBA6 Nonsense_Mutation p.Q11* 0.27 TCGA-86-6851-01 4 69107514 69107514 A G TMPRSS11B Missense_Mutation p.I6T 0.09 tolerated_low_confidence(0.43) benign(0.06) TCGA-86-6851-01 4 70146396 70146396 G T UGT2B28 Missense_Mutation p.A60S 0.39 tolerated(0.24) benign(0.113) TCGA-86-6851-01 4 71115207 71115207 G T CSN3 3'UTR 0.65 TCGA-86-6851-01 4 7435511 7435511 A T PSAPL1 Missense_Mutation p.C366S 0.11 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 4 7435731 7435731 C G PSAPL1 Silent p.V292V 0.21 TCGA-86-6851-01 4 74367545 74367545 A T AFM Missense_Mutation p.D563V 0.42 tolerated(0.1) benign(0.111) TCGA-86-6851-01 4 77288729 77288729 A G CCDC158 Silent p.N516N 0.07 TCGA-86-6851-01 4 77691881 77691881 G T SHROOM3 Missense_Mutation p.V1818L 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-86-6851-01 4 91229571 91229571 C T CCSER1 Missense_Mutation p.P46S 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-86-6851-01 4 9828093 9828093 C T SLC2A9 Silent p.R517R 0.18 TCGA-86-6851-01 5 108134001 108134001 A T FER Nonsense_Mutation p.K40* 0.30 TCGA-86-6851-01 5 110407649 110407649 C A TSLP Missense_Mutation p.Q21K 0.41 deleterious(0.01) probably_damaging(0.987) TCGA-86-6851-01 5 118580152 118580152 G C DMXL1 Missense_Mutation p.D2914H 0.15 deleterious(0) probably_damaging(0.937) TCGA-86-6851-01 5 1221362 1221362 C T SLC6A19 Silent p.I545I 0.23 TCGA-86-6851-01 5 127611777 127611777 G A FBN2 Missense_Mutation p.S2516L 0.12 deleterious(0.05) probably_damaging(0.933) TCGA-86-6851-01 5 129037099 129037099 G C ADAMTS19 Missense_Mutation p.W985C 0.31 deleterious(0) probably_damaging(0.971) TCGA-86-6851-01 5 135229727 135229727 T C IL9 Silent p.L99L 0.70 TCGA-86-6851-01 5 13766226 13766226 C T DNAH5 Missense_Mutation p.M3320I 0.57 benign(0.001) TCGA-86-6851-01 5 137727287 137727287 G T KDM3B Missense_Mutation p.A656S 0.44 tolerated_low_confidence(0.66) benign(0.001) TCGA-86-6851-01 5 13876872 13876872 T C DNAH5 Missense_Mutation p.Y1106C 0.14 possibly_damaging(0.759) TCGA-86-6851-01 5 140182981 140182981 G T PCDHA3 Silent p.G733G 0.37 TCGA-86-6851-01 5 140249457 140249457 A G PCDHA11 Missense_Mutation p.K257E 0.55 deleterious_low_confidence(0) benign(0.252) TCGA-86-6851-01 5 140475034 140475034 G T PCDHB2 Silent p.G220G 0.24 TCGA-86-6851-01 5 140536781 140536781 A T PCDHB17 Missense_Mutation p.Y402F 0.24 tolerated_low_confidence(0.05) possibly_damaging(0.867) TCGA-86-6851-01 5 140604284 140604284 C A PCDHB14 Missense_Mutation p.L403I 0.39 deleterious_low_confidence(0.03) benign(0.211) TCGA-86-6851-01 5 148392151 148392151 A T SH3TC2 Missense_Mutation p.L1067Q 0.15 deleterious(0) probably_damaging(0.945) TCGA-86-6851-01 5 149563122 149563122 C A CDX1 Missense_Mutation p.P226Q 0.42 deleterious(0.01) benign(0.421) TCGA-86-6851-01 5 149907801 149907801 G T NDST1 Missense_Mutation p.D317Y 0.28 deleterious(0) probably_damaging(1) TCGA-86-6851-01 5 150483222 150483222 C G ANXA6 Missense_Mutation p.R624T 0.43 deleterious(0) probably_damaging(1) TCGA-86-6851-01 5 156535943 156535943 G A HAVCR2 Missense_Mutation p.L18F 0.43 tolerated(0.27) probably_damaging(0.98) TCGA-86-6851-01 5 156926626 156926626 C A ADAM19 Missense_Mutation p.R451S 0.25 deleterious(0.01) benign(0.197) TCGA-86-6851-01 5 159344430 159344430 C G ADRA1B Missense_Mutation p.S173C 0.36 deleterious(0) probably_damaging(0.995) TCGA-86-6851-01 5 16067773 16067773 G T MARCH11 Missense_Mutation p.S339Y 0.17 deleterious(0) possibly_damaging(0.682) TCGA-86-6851-01 5 169532960 169532960 G T FOXI1 5'UTR 0.47 TCGA-86-6851-01 5 174869076 174869076 T - DRD1 Frame_Shift_Del p.T343Pfs*3 0.33 TCGA-86-6851-01 5 179564598 179564598 G T RASGEF1C Missense_Mutation p.L98M 0.50 tolerated(0.2) benign(0.285) TCGA-86-6851-01 5 22078722 22078722 G T CDH12 Missense_Mutation p.P22T 0.20 tolerated(0.08) possibly_damaging(0.57) TCGA-86-6851-01 5 23509638 23509638 G T PRDM9 Missense_Mutation p.M43I 0.13 deleterious_low_confidence(0) benign(0.045) TCGA-86-6851-01 5 33453497 33453497 G C TARS Missense_Mutation p.E178Q 0.08 deleterious(0) benign(0.025) TCGA-86-6851-01 5 33561259 33561260 - T ADAMTS12 Frame_Shift_Ins p.A1333Dfs*15 0.12 TCGA-86-6851-01 5 33576225 33576225 G T ADAMTS12 Silent p.A1302A 0.15 TCGA-86-6851-01 5 33683200 33683200 C A ADAMTS12 Missense_Mutation p.G280W 0.26 deleterious(0) probably_damaging(1) TCGA-86-6851-01 5 33947441 33947441 C A SLC45A2 Missense_Mutation p.G399C 0.56 tolerated(0.09) probably_damaging(0.992) TCGA-86-6851-01 5 35709195 35709196 - C SPEF2 Frame_Shift_Ins p.T939Yfs*14 0.12 TCGA-86-6851-01 5 35875721 35875721 G T IL7R Intron 0.24 TCGA-86-6851-01 5 36049077 36049077 A T UGT3A2 Missense_Mutation p.F253I 0.17 deleterious(0) possibly_damaging(0.896) TCGA-86-6851-01 5 37169174 37169174 C A C5orf42 Missense_Mutation p.D2318Y 0.12 deleterious(0) probably_damaging(0.982) TCGA-86-6851-01 5 376812 376812 A G AHRR Missense_Mutation p.E115G 0.70 deleterious(0) probably_damaging(0.998) TCGA-86-6851-01 5 45262343 45262343 G T HCN1 Missense_Mutation p.P785T 0.14 tolerated_low_confidence(0.13) benign(0.288) TCGA-86-6851-01 5 54403630 54403630 G T GZMA Missense_Mutation p.R75M 0.30 tolerated(0.19) benign(0.359) TCGA-86-6851-01 5 7396557 7396557 C A ADCY2 Missense_Mutation p.L50M 0.65 deleterious(0.03) possibly_damaging(0.897) TCGA-86-6851-01 5 82816151 82816151 C G VCAN Missense_Mutation p.L676V 0.36 tolerated(1) benign(0.008) TCGA-86-6851-01 5 89949444 89949444 A G GPR98 Silent p.T1351T 0.22 TCGA-86-6851-01 5 9043077 9043077 G T SEMA5A Missense_Mutation p.P1053T 0.10 deleterious(0.02) possibly_damaging(0.588) TCGA-86-6851-01 5 9063218 9063218 C A SEMA5A Splice_Site p.X767_splice 0.19 TCGA-86-6851-01 5 96232566 96232566 A T ERAP2 Missense_Mutation p.N501I 0.08 deleterious(0) benign(0.188) TCGA-86-6851-01 6 100838281 100838281 G - SIM1 Frame_Shift_Del p.Q753Kfs*9 0.23 TCGA-86-6851-01 6 100911423 100911423 G T SIM1 5'UTR 0.24 TCGA-86-6851-01 6 100960595 100960595 C A ASCC3 Missense_Mutation p.G2092V 0.24 tolerated(0.06) benign(0.201) TCGA-86-6851-01 6 100960596 100960596 C A ASCC3 Missense_Mutation p.G2092W 0.24 deleterious(0) probably_damaging(0.911) TCGA-86-6851-01 6 100965956 100965956 C G ASCC3 Silent p.L1946L 0.24 TCGA-86-6851-01 6 10529193 10529193 G T GCNT2 Missense_Mutation p.A17S 0.18 tolerated(0.17) benign(0.04) TCGA-86-6851-01 6 105300216 105300216 G A HACE1 Missense_Mutation p.P36L 0.23 deleterious_low_confidence(0) possibly_damaging(0.583) TCGA-86-6851-01 6 105564715 105564715 C A BVES Missense_Mutation p.R226I 0.16 deleterious(0.01) benign(0.048) TCGA-86-6851-01 6 107390010 107390010 C T BEND3 Silent p.E795E 0.23 TCGA-86-6851-01 6 109802996 109802996 C G ZBTB24 Missense_Mutation p.M78I 0.17 deleterious(0.03) benign(0.285) TCGA-86-6851-01 6 110112626 110112626 C T FIG4 Missense_Mutation p.A743V 0.10 deleterious(0.04) benign(0.132) TCGA-86-6851-01 6 116956996 116956996 C T ZUFSP Silent p.%3D 0.14 TCGA-86-6851-01 6 117677813 117677813 T A ROS1 Missense_Mutation p.I1374F 0.22 deleterious(0.01) benign(0.006) TCGA-86-6851-01 6 123319180 123319180 C G CLVS2 Missense_Mutation p.F86L 0.25 tolerated(0.16) benign(0.241) TCGA-86-6851-01 6 132173372 132173372 C T ENPP1 Missense_Mutation p.A205V 0.21 tolerated(0.06) benign(0.071) TCGA-86-6851-01 6 132860367 132860367 C A TAAR9 Missense_Mutation p.F313L 0.21 tolerated(0.67) benign(0.232) TCGA-86-6851-01 6 132873990 132873990 G A TAAR8 Missense_Mutation p.M53I 0.21 tolerated(1) benign(0.009) TCGA-86-6851-01 6 132874129 132874129 G T TAAR8 Nonsense_Mutation p.G100* 0.11 TCGA-86-6851-01 6 139498129 139498129 G T HECA Missense_Mutation p.G507W 0.26 deleterious(0) probably_damaging(0.998) TCGA-86-6851-01 6 143092296 143092296 C G HIVEP2 Missense_Mutation p.E1194Q 0.15 tolerated(0.2) possibly_damaging(0.588) TCGA-86-6851-01 6 143093208 143093208 C G HIVEP2 Missense_Mutation p.E890Q 0.13 deleterious(0) probably_damaging(0.997) TCGA-86-6851-01 6 146719922 146719922 G C GRM1 Missense_Mutation p.V583L 0.18 tolerated(0.33) benign(0.012) TCGA-86-6851-01 6 151673998 151673998 C T AKAP12 Missense_Mutation p.T1491I 0.13 deleterious(0.03) benign(0.048) TCGA-86-6851-01 6 151936691 151936691 G A CCDC170 Silent p.L608L 0.28 TCGA-86-6851-01 6 152754989 152754989 C A SYNE1 Nonsense_Mutation p.E1468* 0.19 TCGA-86-6851-01 6 153042943 153042943 C A MYCT1 Missense_Mutation p.A88D 0.21 deleterious(0) probably_damaging(0.929) TCGA-86-6851-01 6 15487586 15487586 A T JARID2 Missense_Mutation p.K240I 0.26 deleterious_low_confidence(0) possibly_damaging(0.723) TCGA-86-6851-01 6 159457615 159457615 G A TAGAP Silent p.P480P 0.14 TCGA-86-6851-01 6 160666574 160666574 G A SLC22A2 Silent p.L321L 0.19 TCGA-86-6851-01 6 161160109 161160109 G C PLG Missense_Mutation p.R629S 0.21 tolerated(0.19) benign(0.348) TCGA-86-6851-01 6 161160215 161160215 G T PLG Missense_Mutation p.D665Y 0.22 deleterious(0) probably_damaging(1) TCGA-86-6851-01 6 165711542 165711542 C - C6orf118 Frame_Shift_Del p.A329Rfs*10 0.25 TCGA-86-6851-01 6 169648580 169648580 C T THBS2 Missense_Mutation p.E181K 0.24 tolerated(0.17) possibly_damaging(0.888) TCGA-86-6851-01 6 17837114 17837114 C G KIF13A Missense_Mutation p.A384P 0.26 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 6 25921632 25921632 C A SLC17A2 Silent p.V83V 0.18 TCGA-86-6851-01 6 26031973 26031973 C T HIST1H3B Missense_Mutation p.E106K 0.30 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-86-6851-01 6 26033604 26033604 C G HIST1H2AB Missense_Mutation p.E65Q 0.06 deleterious_low_confidence(0.04) benign(0.042) TCGA-86-6851-01 6 26225539 26225539 C A HIST1H3E Missense_Mutation p.R53S 0.19 deleterious_low_confidence(0.01) benign(0.032) TCGA-86-6851-01 6 26240950 26240950 C G HIST1H4F Nonsense_Mutation p.Y99* 0.08 TCGA-86-6851-01 6 27835138 27835138 C A HIST1H1B Missense_Mutation p.R57L 0.21 deleterious(0) probably_damaging(0.998) TCGA-86-6851-01 6 28120089 28120089 G T ZKSCAN8 Missense_Mutation p.W234C 0.17 tolerated(0.05) probably_damaging(0.973) TCGA-86-6851-01 6 29591181 29591181 T C GABBR1 Silent p.P288P 0.37 TCGA-86-6851-01 6 29641187 29641187 G T ZFP57 Missense_Mutation p.T234K 0.20 tolerated(0.1) benign(0.052) TCGA-86-6851-01 6 30104992 30104992 G C TRIM40 Missense_Mutation p.C60S 0.24 deleterious(0) possibly_damaging(0.711) TCGA-86-6851-01 6 30955887 30955887 G T MUC21 Missense_Mutation p.R539S 0.25 tolerated(0.08) benign(0.372) TCGA-86-6851-01 6 31083934 31083934 A T CDSN Nonsense_Mutation p.C486* 0.22 TCGA-86-6851-01 6 31655057 31655057 G A ABHD16A Missense_Mutation p.H537Y 0.21 tolerated(1) benign(0) TCGA-86-6851-01 6 32119683 32119683 G T PRRT1 5'UTR 0.23 TCGA-86-6851-01 6 32180910 32180910 A T NOTCH4 Splice_Site p.X813_splice 0.12 TCGA-86-6851-01 6 32362737 32362737 A G BTNL2 Missense_Mutation p.S382P 0.21 deleterious(0.01) possibly_damaging(0.744) TCGA-86-6851-01 6 37139014 37139014 G C PIM1 Silent p.L118L 0.05 TCGA-86-6851-01 6 39267446 39267446 C T KCNK17 Silent p.G252G 0.16 TCGA-86-6851-01 6 39693041 39693041 C A KIF6 Missense_Mutation p.V16F 0.18 tolerated(0.1) benign(0.332) TCGA-86-6851-01 6 41162309 41162309 C T TREML2 Silent p.A213A 0.11 TCGA-86-6851-01 6 41533600 41533600 C A FOXP4 Silent p.A34A 0.26 TCGA-86-6851-01 6 41654816 41654816 T A TFEB Intron 0.18 TCGA-86-6851-01 6 43271888 43271888 G T SLC22A7 Missense_Mutation p.G500W 0.26 deleterious(0.05) probably_damaging(0.998) TCGA-86-6851-01 6 44144372 44144372 G T CAPN11 Missense_Mutation p.K352N 0.19 tolerated(0.13) benign(0.013) TCGA-86-6851-01 6 44254012 44254012 C G TCTE1 Missense_Mutation p.D179H 0.14 deleterious(0.03) possibly_damaging(0.818) TCGA-86-6851-01 6 47646726 47646726 C T GPR111 Silent p.C109C 0.18 TCGA-86-6851-01 6 47847488 47847488 C A PTCHD4 Silent p.V364V 0.13 TCGA-86-6851-01 6 4943946 4943946 G T CDYL Missense_Mutation p.G430C 0.21 deleterious(0) probably_damaging(0.991) TCGA-86-6851-01 6 49986727 49986727 C A DEFB110 Missense_Mutation p.C56F 0.18 deleterious(0) probably_damaging(0.983) TCGA-86-6851-01 6 50686838 50686838 T A TFAP2D Missense_Mutation p.N191K 0.40 tolerated(0.72) possibly_damaging(0.727) TCGA-86-6851-01 6 50791195 50791195 A T TFAP2B Missense_Mutation p.S53C 0.21 deleterious(0.02) possibly_damaging(0.804) TCGA-86-6851-01 6 51777291 51777291 C A PKHD1 Missense_Mutation p.D2069Y 0.16 deleterious(0) probably_damaging(0.966) TCGA-86-6851-01 6 51777292 51777292 C A PKHD1 Silent p.V2068V 0.17 TCGA-86-6851-01 6 51935236 51935236 C A PKHD1 Missense_Mutation p.Q225H 0.36 tolerated(0.59) benign(0.051) TCGA-86-6851-01 6 53986316 53986316 C A MLIP Silent p.T45T 0.25 TCGA-86-6851-01 6 54806636 54806636 C A FAM83B Missense_Mutation p.T956N 0.23 tolerated(0.12) benign(0.002) TCGA-86-6851-01 6 55142304 55142304 C G HCRTR2 Missense_Mutation p.R297G 0.17 tolerated(0.05) possibly_damaging(0.778) TCGA-86-6851-01 6 56504830 56504830 C A DST Missense_Mutation p.G302V 0.28 probably_damaging(1) TCGA-86-6851-01 6 6167690 6167690 C T F13A1 Splice_Site p.X636_splice 0.18 TCGA-86-6851-01 6 66205175 66205175 C A EYS Missense_Mutation p.W43C 0.23 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-86-6851-01 6 70049390 70049390 G T BAI3 Silent p.R1151R 0.23 TCGA-86-6851-01 6 70639516 70639516 C A COL19A1 Missense_Mutation p.T197N 0.22 deleterious(0.02) unknown(0) TCGA-86-6851-01 6 80878589 80878589 C T BCKDHB Intron 0.15 TCGA-86-6851-01 6 86243356 86243356 C T SNX14 Missense_Mutation p.V591M 0.14 deleterious(0) probably_damaging(0.995) TCGA-86-6851-01 6 87726017 87726017 C A HTR1E Missense_Mutation p.S322Y 0.15 tolerated(1) probably_damaging(0.994) TCGA-86-6851-01 6 87726077 87726077 T A HTR1E Missense_Mutation p.L342Q 0.28 deleterious(0) probably_damaging(0.998) TCGA-86-6851-01 6 89909117 89909117 C G GABRR1 Missense_Mutation p.Q104H 0.19 tolerated(0.06) probably_damaging(1) TCGA-86-6851-01 6 97063629 97063629 G T FHL5 Missense_Mutation p.G279V 0.15 tolerated(0.12) possibly_damaging(0.791) TCGA-86-6851-01 6 99729269 99729269 C A FAXC Missense_Mutation p.W334L 0.23 deleterious(0) probably_damaging(1) TCGA-86-6851-01 7 100091411 100091411 G T NYAP1 Missense_Mutation p.C804F 0.17 deleterious(0) probably_damaging(1) TCGA-86-6851-01 7 100349983 100349983 C A ZAN Missense_Mutation p.P752H 0.20 benign(0.063) TCGA-86-6851-01 7 100357400 100357400 T A ZAN Missense_Mutation p.C1210S 0.36 unknown(0) TCGA-86-6851-01 7 100458871 100458871 G T SLC12A9 Missense_Mutation p.A444S 0.15 deleterious(0) probably_damaging(0.971) TCGA-86-6851-01 7 102079459 102079459 C G ORAI2 Missense_Mutation p.P19R 0.23 tolerated_low_confidence(0.18) benign(0.001) TCGA-86-6851-01 7 103061306 103061306 T A SLC26A5 Silent p.I57I 0.22 TCGA-86-6851-01 7 104747098 104747098 C G KMT2E Missense_Mutation p.S909C 0.04 deleterious_low_confidence(0) possibly_damaging(0.7) TCGA-86-6851-01 7 105146454 105146454 C A PUS7 Missense_Mutation p.R178L 0.19 deleterious(0.02) benign(0.031) TCGA-86-6851-01 7 107399464 107399464 G C CBLL1 Silent p.L439L 0.05 TCGA-86-6851-01 7 107688526 107688526 C A LAMB4 Missense_Mutation p.V1385L 0.16 tolerated(0.44) benign(0.005) TCGA-86-6851-01 7 107823167 107823167 A T NRCAM Silent p.A834A 0.17 TCGA-86-6851-01 7 11068443 11068443 G C PHF14 Missense_Mutation p.E485Q 0.08 deleterious(0.01) benign(0.185) TCGA-86-6851-01 7 110763749 110763749 C A LRRN3 Missense_Mutation p.N307K 0.10 deleterious(0) possibly_damaging(0.798) TCGA-86-6851-01 7 110763750 110763750 C A LRRN3 Missense_Mutation p.L308M 0.11 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 7 112723587 112723587 C G GPR85 3'UTR 0.13 TCGA-86-6851-01 7 113519495 113519495 C A PPP1R3A Missense_Mutation p.S551I 0.18 deleterious(0.02) benign(0.405) TCGA-86-6851-01 7 119915331 119915331 C T KCND2 Silent p.H215H 0.14 TCGA-86-6851-01 7 121985728 121985728 C T CADPS2 Missense_Mutation p.G1171E 0.11 deleterious(0) probably_damaging(0.918) TCGA-86-6851-01 7 123257734 123257734 G T ASB15 Nonsense_Mutation p.E132* 0.20 TCGA-86-6851-01 7 124404327 124404327 G A GPR37 Missense_Mutation p.P235L 0.13 deleterious(0.01) benign(0.002) TCGA-86-6851-01 7 126883160 126883160 G A GRM8 Silent p.S33S 0.20 TCGA-86-6851-01 7 127255572 127255572 C A PAX4 Translation_Start_Site p.M1? 0.25 deleterious(0.05) benign(0.002) TCGA-86-6851-01 7 128034338 128034338 A C IMPDH1 Missense_Mutation p.L591R 0.12 deleterious(0) possibly_damaging(0.759) TCGA-86-6851-01 7 128398927 128398927 G T CALU Missense_Mutation p.D148Y 0.23 deleterious(0) probably_damaging(0.91) TCGA-86-6851-01 7 128612603 128612603 C A TNPO3 Silent p.R769R 0.19 TCGA-86-6851-01 7 128612604 128612604 C A TNPO3 Missense_Mutation p.R769L 0.21 deleterious(0.04) benign(0.044) TCGA-86-6851-01 7 132192749 132192749 G T PLXNA4 Missense_Mutation p.T235N 0.27 tolerated(0.06) possibly_damaging(0.676) TCGA-86-6851-01 7 134136493 134136493 G T AKR1B1 Missense_Mutation p.Q27K 0.19 tolerated(1) benign(0.001) TCGA-86-6851-01 7 137028305 137028305 C A PTN 5'UTR 0.18 TCGA-86-6851-01 7 138329521 138329521 G T SVOPL Missense_Mutation p.R244S 0.17 tolerated(0.14) benign(0.009) TCGA-86-6851-01 7 139756937 139756937 T A PARP12 Missense_Mutation p.N160I 0.24 deleterious(0) probably_damaging(0.994) TCGA-86-6851-01 7 142120083 142120083 C A TRBV7-7 Missense_Mutation p.R28S 0.23 tolerated(0.31) benign(0.07) TCGA-86-6851-01 7 142459706 142459706 C G PRSS1 Missense_Mutation p.I94M 0.22 deleterious(0) probably_damaging(0.951) TCGA-86-6851-01 7 143175208 143175208 C A TAS2R41 Silent p.G81G 0.23 TCGA-86-6851-01 7 144245632 144245632 C A TPK1 Nonsense_Mutation p.G189* 0.14 TCGA-86-6851-01 7 148427288 148427288 G T CUL1 Missense_Mutation p.R25I 0.17 deleterious(0.01) benign(0.093) TCGA-86-6851-01 7 148486887 148486887 A C CUL1 Missense_Mutation p.Q548P 0.24 tolerated(0.07) possibly_damaging(0.849) TCGA-86-6851-01 7 150066791 150066791 G C REPIN1 5'UTR 0.14 TCGA-86-6851-01 7 151879291 151879291 C A KMT2C Missense_Mutation p.G1885V 0.17 probably_damaging(0.979) TCGA-86-6851-01 7 158835763 158835763 G T VIPR2 Missense_Mutation p.S187Y 0.16 deleterious(0.01) probably_damaging(0.99) TCGA-86-6851-01 7 16714111 16714111 C T BZW2 Missense_Mutation p.L45F 0.19 tolerated(0.2) possibly_damaging(0.832) TCGA-86-6851-01 7 19737908 19737908 C A TWISTNB 3'UTR 0.44 TCGA-86-6851-01 7 20441723 20441723 C T ITGB8 Missense_Mutation p.P554L 0.10 tolerated(0.2) probably_damaging(0.998) TCGA-86-6851-01 7 21723472 21723472 G A DNAH11 Missense_Mutation p.C1851Y 0.11 probably_damaging(1) TCGA-86-6851-01 7 23313811 23313811 C A GPNMB Missense_Mutation p.L563I 0.10 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 7 23808719 23808719 G T STK31 Nonsense_Mutation p.E508* 0.36 TCGA-86-6851-01 7 27182767 27182767 G T HOXA5 Missense_Mutation p.P154T 0.16 tolerated(0.12) benign(0.032) TCGA-86-6851-01 7 29535575 29535575 C A CHN2 Missense_Mutation p.T221K 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-86-6851-01 7 30951831 30951831 G T AQP1 Missense_Mutation p.V103L 0.21 tolerated(1) benign(0.001) TCGA-86-6851-01 7 33545098 33545098 G A BBS9 Silent p.V713V 0.12 TCGA-86-6851-01 7 34118542 34118542 G T BMPER Silent p.G384G 0.14 TCGA-86-6851-01 7 4089047 4089047 G C SDK1 Missense_Mutation p.W890C 0.22 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 7 41739731 41739731 G T INHBA Missense_Mutation p.A81E 0.26 deleterious(0) possibly_damaging(0.838) TCGA-86-6851-01 7 42012087 42012087 G T GLI3 Missense_Mutation p.P651Q 0.15 tolerated(0.06) probably_damaging(0.999) TCGA-86-6851-01 7 45688397 45688397 G T ADCY1 Splice_Site p.X383_splice 0.44 TCGA-86-6851-01 7 47866973 47866973 C T PKD1L1 Missense_Mutation p.E2277K 0.26 tolerated(0.17) benign(0.04) TCGA-86-6851-01 7 48315431 48315431 A G ABCA13 Silent p.E2056E 0.23 TCGA-86-6851-01 7 5327577 5327577 G A SLC29A4 Missense_Mutation p.G44S 0.19 tolerated(0.17) benign(0.014) TCGA-86-6851-01 7 5567507 5567507 C T ACTB Missense_Mutation p.E334K 0.09 deleterious_low_confidence(0.03) benign(0.004) TCGA-86-6851-01 7 73790803 73790803 A T CLIP2 Missense_Mutation p.E691V 0.22 tolerated(0.07) probably_damaging(0.912) TCGA-86-6851-01 7 74114663 74114663 C T GTF2I Missense_Mutation p.P154S 0.06 deleterious(0) probably_damaging(1) TCGA-86-6851-01 7 75051390 75051390 C A POM121C Silent p.P715P 0.18 TCGA-86-6851-01 7 81381508 81381508 C T HGF Missense_Mutation p.G185R 0.24 tolerated(0.39) probably_damaging(1) TCGA-86-6851-01 7 82544135 82544135 C A PCLO Missense_Mutation p.R4389S 0.21 unknown(0) TCGA-86-6851-01 7 82544136 82544136 C A PCLO Missense_Mutation p.R4389M 0.23 unknown(0) TCGA-86-6851-01 7 82585859 82585859 C G PCLO Missense_Mutation p.E1470D 0.10 unknown(0) TCGA-86-6851-01 7 83823942 83823942 C T SEMA3A 5'UTR 0.16 TCGA-86-6851-01 7 92731170 92731170 T A SAMD9 Missense_Mutation p.Q1414L 0.20 tolerated(0.89) benign(0.011) TCGA-86-6851-01 7 92734837 92734837 C G SAMD9 Missense_Mutation p.D192H 0.19 deleterious(0) probably_damaging(0.965) TCGA-86-6851-01 7 94049556 94049556 G T COL1A2 Silent p.G697G 0.28 TCGA-86-6851-01 7 96653778 96653778 C - DLX5 Frame_Shift_Del p.G53Efs*28 0.23 TCGA-86-6851-01 7 97361970 97361970 C A TAC1 Missense_Mutation p.Q16K 0.22 deleterious(0.03) possibly_damaging(0.644) TCGA-86-6851-01 7 97780744 97780744 A T LMTK2 Missense_Mutation p.I143F 0.28 deleterious(0) probably_damaging(1) TCGA-86-6851-01 7 98546278 98546278 G A TRRAP Silent p.L1579L 0.12 TCGA-86-6851-01 7 99063748 99063748 T A ATP5J2 Missense_Mutation p.E6V 0.14 tolerated(0.25) benign(0.001) TCGA-86-6851-01 7 99631912 99631912 C T ZKSCAN1 3'UTR 0.21 TCGA-86-6851-01 7 99701314 99701314 A T AP4M1 Missense_Mutation p.Q181L 0.25 tolerated(0.09) possibly_damaging(0.723) TCGA-86-6851-01 8 10468763 10468763 G T RP1L1 Missense_Mutation p.P949T 0.13 probably_damaging(0.959) TCGA-86-6851-01 8 104948909 104948909 C A RIMS2 Missense_Mutation p.Q836K 0.23 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-86-6851-01 8 105361740 105361740 C A DCSTAMP Silent p.L320L 0.29 TCGA-86-6851-01 8 106813863 106813863 C A ZFPM2 Missense_Mutation p.A518D 0.30 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 8 113529330 113529330 C G CSMD3 Missense_Mutation p.E1563D 0.25 tolerated(0.29) benign(0.005) TCGA-86-6851-01 8 113694742 113694742 C A CSMD3 Missense_Mutation p.G869V 0.22 deleterious(0) probably_damaging(1) TCGA-86-6851-01 8 113694744 113694744 C A CSMD3 Missense_Mutation p.Q868H 0.19 tolerated(0.35) probably_damaging(1) TCGA-86-6851-01 8 114389080 114389080 G C CSMD3 Intron 0.20 TCGA-86-6851-01 8 121357730 121357730 G A COL14A1 Missense_Mutation p.G1669S 0.16 deleterious(0) probably_damaging(1) TCGA-86-6851-01 8 124333375 124333375 C T ATAD2 Silent p.%3D 0.08 TCGA-86-6851-01 8 124801879 124801879 A T FAM91A1 Silent p.A435A 0.22 TCGA-86-6851-01 8 124988193 124988193 G T FER1L6 Missense_Mutation p.V247L 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-86-6851-01 8 125074120 125074120 C A FER1L6 Missense_Mutation p.P1059T 0.16 deleterious(0) probably_damaging(1) TCGA-86-6851-01 8 131073179 131073179 C A ASAP1 Silent p.L946L 0.25 TCGA-86-6851-01 8 131964203 131964203 C A ADCY8 Silent p.L384L 0.19 TCGA-86-6851-01 8 132002674 132002674 C A ADCY8 Missense_Mutation p.A359S 0.20 tolerated(0.06) benign(0.031) TCGA-86-6851-01 8 139155268 139155268 T A FAM135B Missense_Mutation p.I1209L 0.30 tolerated(0.14) possibly_damaging(0.549) TCGA-86-6851-01 8 143436085 143436085 T G TSNARE1 Translation_Start_Site p.M1? 0.36 deleterious_low_confidence(0) unknown(0) TCGA-86-6851-01 8 16032707 16032707 C A MSR1 Missense_Mutation p.G69V 0.22 deleterious(0.04) possibly_damaging(0.901) TCGA-86-6851-01 8 31030604 31030604 G T WRN Missense_Mutation p.G1429C 0.15 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-86-6851-01 8 37729733 37729733 C A RAB11FIP1 Nonsense_Mutation p.E863* 0.18 TCGA-86-6851-01 8 42179669 42179669 C G IKBKB Silent p.L612L 0.10 TCGA-86-6851-01 8 42591710 42591710 G T CHRNB3 Silent p.S442S 0.24 TCGA-86-6851-01 8 42591711 42591711 G T CHRNB3 Missense_Mutation p.V443F 0.25 tolerated(0.15) possibly_damaging(0.756) TCGA-86-6851-01 8 49831267 49831267 G C SNAI2 3'UTR 0.40 TCGA-86-6851-01 8 53084452 53084452 G T ST18 Silent p.T323T 0.22 TCGA-86-6851-01 8 54764607 54764607 G T RGS20 Missense_Mutation p.A50S 0.33 deleterious_low_confidence(0) benign(0.321) TCGA-86-6851-01 8 59515919 59515919 C T NSMAF Missense_Mutation p.E330K 0.25 deleterious(0.02) possibly_damaging(0.823) TCGA-86-6851-01 8 71068584 71068584 C A NCOA2 Missense_Mutation p.L672F 0.46 tolerated(0.46) benign(0.037) TCGA-86-6851-01 8 73480145 73480145 C A KCNB2 Missense_Mutation p.T59K 0.26 deleterious(0) probably_damaging(0.998) TCGA-86-6851-01 8 74515961 74515961 C A STAU2 Missense_Mutation p.Q343H 0.39 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 8 88885094 88885094 G T DCAF4L2 Missense_Mutation p.S369Y 0.19 tolerated(0.12) benign(0.403) TCGA-86-6851-01 8 88885822 88885822 C T DCAF4L2 Silent p.K126K 0.28 TCGA-86-6851-01 8 88886137 88886137 C A DCAF4L2 Silent p.V21V 0.18 TCGA-86-6851-01 8 92407472 92407472 G T SLC26A7 3'Flank 0.23 TCGA-86-6851-01 8 95183141 95183141 T C CDH17 Missense_Mutation p.I286V 0.20 tolerated(0.15) benign(0.312) TCGA-86-6851-01 8 95690472 95690472 G C ESRP1 Missense_Mutation p.V565L 0.33 tolerated(0.42) benign(0.008) TCGA-86-6851-01 8 95800281 95800281 G T DPY19L4 Splice_Site p.X669_splice 0.11 TCGA-86-6851-01 8 97978195 97978195 G T CPQ Missense_Mutation p.W294C 0.13 deleterious(0) probably_damaging(1) TCGA-86-6851-01 8 98943360 98943360 G T MATN2 Nonsense_Mutation p.E108* 0.12 TCGA-86-6851-01 8 99146751 99146751 T - POP1 Frame_Shift_Del p.V293Cfs*5 0.23 TCGA-86-6851-01 9 101802814 101802814 G A COL15A1 Silent p.G829G 0.15 TCGA-86-6851-01 9 102769949 102769949 G A ERP44 Missense_Mutation p.P262L 0.23 deleterious(0) probably_damaging(0.998) TCGA-86-6851-01 9 114484859 114484859 T A C9orf84 Missense_Mutation p.Q590L 0.22 deleterious(0) probably_damaging(0.998) TCGA-86-6851-01 9 116044941 116044941 C G PRPF4 Silent p.L137L 0.09 TCGA-86-6851-01 9 120470943 120470943 C A TLR4 Missense_Mutation p.L66M 0.30 deleterious(0) probably_damaging(1) TCGA-86-6851-01 9 125316353 125316353 T A OR1N2 Missense_Mutation p.L302Q 0.10 deleterious(0) possibly_damaging(0.754) TCGA-86-6851-01 9 127300495 127300495 C G NR6A1 Missense_Mutation p.G234R 0.14 tolerated(0.18) benign(0.095) TCGA-86-6851-01 9 130511506 130511506 C A SH2D3C Missense_Mutation p.D375Y 0.09 deleterious(0.01) possibly_damaging(0.873) TCGA-86-6851-01 9 133911562 133911562 C A LAMC3 Nonsense_Mutation p.C273* 0.10 TCGA-86-6851-01 9 135158694 135158694 C A SETX Missense_Mutation p.R2168L 0.11 tolerated(0.14) probably_damaging(0.973) TCGA-86-6851-01 9 135203189 135203189 G A SETX Missense_Mutation p.P1266S 0.06 deleterious(0) probably_damaging(1) TCGA-86-6851-01 9 135277138 135277138 G A TTF1 Silent p.Y357Y 0.07 TCGA-86-6851-01 9 137688228 137688228 C T COL5A1 Silent p.S936S 0.09 TCGA-86-6851-01 9 139925532 139925532 G T FUT7 Missense_Mutation p.A220D 0.12 deleterious(0) benign(0.083) TCGA-86-6851-01 9 140151353 140151353 G C NELFB Missense_Mutation p.Q148H 0.09 deleterious(0) possibly_damaging(0.908) TCGA-86-6851-01 9 140395241 140395241 C A PNPLA7 Silent p.V553V 0.29 TCGA-86-6851-01 9 140637960 140637960 C G EHMT1 Missense_Mutation p.H321D 0.15 deleterious_low_confidence(0) possibly_damaging(0.563) TCGA-86-6851-01 9 173368 173368 T C CBWD1 Splice_Site p.X81_splice 0.37 TCGA-86-6851-01 9 18635992 18635992 T C ADAMTSL1 Missense_Mutation p.V218A 0.26 deleterious(0.04) benign(0.234) TCGA-86-6851-01 9 32633404 32633404 C T TAF1L Missense_Mutation p.R725Q 0.31 deleterious(0) possibly_damaging(0.541) TCGA-86-6851-01 9 33395131 33395131 T A AQP7 Missense_Mutation p.Q30L 0.31 deleterious(0.05) benign(0.333) TCGA-86-6851-01 9 34611327 34611327 C A RPP25L Intron 0.42 TCGA-86-6851-01 9 38395746 38395746 A T ALDH1B1 Translation_Start_Site p.M1? 0.13 tolerated_low_confidence(0.15) possibly_damaging(0.658) TCGA-86-6851-01 9 71152289 71152289 G A TMEM252 Silent p.F133F 0.09 TCGA-86-6851-01 9 79318740 79318740 T A PRUNE2 Missense_Mutation p.T2597S 0.20 tolerated(0.16) benign(0.004) TCGA-86-6851-01 9 79323683 79323683 C T PRUNE2 Silent p.V1169V 0.32 TCGA-86-6851-01 9 79325100 79325100 C G PRUNE2 Missense_Mutation p.R697T 0.33 deleterious(0) probably_damaging(0.999) TCGA-86-6851-01 9 79933397 79933397 G A VPS13A Missense_Mutation p.A1735T 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-86-6851-01 9 84609893 84609893 A T SPATA31D1 Missense_Mutation p.E1503V 0.12 tolerated(0.73) benign(0.008) TCGA-86-6851-01 9 85615413 85615413 C A RASEF Missense_Mutation p.G504W 0.23 deleterious(0.01) possibly_damaging(0.497) TCGA-86-6851-01 9 94486419 94486419 T C ROR2 Missense_Mutation p.Y786C 0.34 deleterious(0) probably_damaging(0.99) TCGA-86-6851-01 X 100910689 100910689 A G ARMCX2 Missense_Mutation p.V629A 0.18 deleterious(0) unknown(0) TCGA-86-6851-01 X 101096947 101096947 T A NXF5 Splice_Site p.X18_splice 0.37 TCGA-86-6851-01 X 103267967 103267967 A T H2BFWT Missense_Mutation p.L89Q 0.12 deleterious(0) probably_damaging(1) TCGA-86-6851-01 X 107407909 107407909 G A COL4A6 Silent p.G1331G 0.40 TCGA-86-6851-01 X 110490691 110490691 C A CAPN6 Missense_Mutation p.V550F 0.27 deleterious(0) probably_damaging(0.942) TCGA-86-6851-01 X 11316243 11316243 C G AMELX Missense_Mutation p.I41M 0.04 deleterious_low_confidence(0.05) probably_damaging(0.932) TCGA-86-6851-01 X 119005595 119005595 G A RNF113A 5'UTR 0.14 TCGA-86-6851-01 X 123838989 123838989 G A TENM1 Nonsense_Mutation p.R297* 0.06 TCGA-86-6851-01 X 123839041 123839041 G T TENM1 Missense_Mutation p.N279K 0.28 deleterious_low_confidence(0) possibly_damaging(0.88) TCGA-86-6851-01 X 128692884 128692884 T C OCRL Missense_Mutation p.F210L 0.30 tolerated(0.33) benign(0.013) TCGA-86-6851-01 X 13764935 13764935 A G OFD1 Missense_Mutation p.K231E 0.36 deleterious(0.03) benign(0.126) TCGA-86-6851-01 X 137715014 137715014 C A FGF13 Silent p.T255T 0.29 TCGA-86-6851-01 X 142718335 142718335 C A SLITRK4 Missense_Mutation p.G197V 0.33 deleterious(0) probably_damaging(1) TCGA-86-6851-01 X 152710395 152710395 C A TREX2 Missense_Mutation p.R165L 0.21 tolerated(0.33) benign(0.101) TCGA-86-6851-01 X 20212340 20212340 C A RPS6KA3 Missense_Mutation p.R151S 0.39 tolerated(0.25) probably_damaging(0.999) TCGA-86-6851-01 X 22112188 22112188 G T PHEX Missense_Mutation p.V274L 0.30 deleterious(0.05) benign(0.006) TCGA-86-6851-01 X 30260943 30260943 G T MAGEB4 Missense_Mutation p.D231Y 0.24 deleterious(0.03) probably_damaging(0.998) TCGA-86-6851-01 X 3239969 3239969 A T MXRA5 Missense_Mutation p.S1253T 0.26 tolerated(0.34) benign(0.007) TCGA-86-6851-01 X 34150261 34150261 G T FAM47A Silent p.T45T 0.28 TCGA-86-6851-01 X 37026780 37026780 G C FAM47C Missense_Mutation p.K99N 0.31 deleterious(0.02) benign(0.331) TCGA-86-6851-01 X 37027491 37027491 G T FAM47C Missense_Mutation p.K336N 0.30 tolerated(0.14) possibly_damaging(0.772) TCGA-86-6851-01 X 48125747 48125747 G C SSX1 Missense_Mutation p.W164C 0.03 deleterious(0) probably_damaging(0.992) TCGA-86-6851-01 X 49070315 49070315 C A CACNA1F Silent p.V1263V 0.24 TCGA-86-6851-01 X 50136178 50136178 C A DGKK RNA 0.21 TCGA-86-6851-01 X 53106005 53106005 G T GPR173 Missense_Mutation p.D68Y 0.31 deleterious(0) probably_damaging(1) TCGA-86-6851-01 X 54161374 54161374 A G FAM120C Silent p.S502S 0.30 TCGA-86-6851-01 X 54497780 54497780 G T FGD1 Missense_Mutation p.P150T 0.31 deleterious(0.02) possibly_damaging(0.908) TCGA-86-6851-01 X 64734730 64734730 C A LAS1L Missense_Mutation p.R684L 0.33 tolerated(0.07) possibly_damaging(0.551) TCGA-86-6851-01 X 64949300 64949300 G C MSN Missense_Mutation p.V65L 0.16 deleterious(0.03) possibly_damaging(0.789) TCGA-86-6851-01 X 65819692 65819692 C A EDA2R Silent p.L197L 0.42 TCGA-86-6851-01 X 66937402 66937402 G C AR Missense_Mutation p.W752C 0.26 deleterious(0) probably_damaging(1) TCGA-86-6851-01 X 69717039 69717039 C T DLG3 Intron 0.11 TCGA-86-6851-01 X 71351060 71351060 G C RGAG4 Missense_Mutation p.R111G 0.21 tolerated_low_confidence(0.32) benign(0.176) TCGA-86-6851-01 X 72433573 72433573 A T NAP1L2 Missense_Mutation p.D252E 0.08 tolerated(0.5) benign(0.011) TCGA-86-6851-01 X 73962851 73962851 C A KIAA2022 Missense_Mutation p.G514V 0.27 deleterious(0.02) probably_damaging(0.981) TCGA-86-6851-01 X 75003786 75003786 A T MAGEE2 Silent p.S367S 0.25 TCGA-86-6851-01 X 77395140 77395140 G A TAF9B 5'UTR 0.16 TCGA-86-6851-01 X 77913554 77913554 C A ZCCHC5 Nonsense_Mutation p.E122* 0.44 TCGA-86-6851-01 X 89177312 89177312 C A TGIF2LX Silent p.A76A 0.28 TCGA-86-6851-01 X 9863246 9863246 G A SHROOM2 Missense_Mutation p.S433N 0.32 deleterious(0) benign(0.086) TCGA-86-7701-01 10 105903272 105903272 T C WDR96 Missense_Mutation p.N1357S 0.04 tolerated(0.48) benign(0.006) TCGA-86-7701-01 10 12940463 12940463 G A CCDC3 Missense_Mutation p.H256Y 0.33 tolerated_low_confidence(0.15) benign(0.009) TCGA-86-7701-01 10 131639112 131639112 G A EBF3 Silent p.Y510Y 0.14 TCGA-86-7701-01 10 14978555 14978555 T A DCLRE1C Missense_Mutation p.H115L 0.29 deleterious(0.01) possibly_damaging(0.901) TCGA-86-7701-01 10 20357100 20357100 G T PLXDC2 Missense_Mutation p.R158I 0.22 deleterious(0) possibly_damaging(0.588) TCGA-86-7701-01 10 21461326 21461326 C T NEBL-AS1 5'Flank 0.20 TCGA-86-7701-01 10 21804562 21804562 C A SKIDA1 Missense_Mutation p.L730F 0.22 tolerated(0.22) unknown(0) TCGA-86-7701-01 10 27687802 27687802 A T PTCHD3 Missense_Mutation p.D575E 0.21 tolerated(0.22) benign(0.034) TCGA-86-7701-01 10 37508598 37508598 G T ANKRD30A Missense_Mutation p.D1264Y 0.31 deleterious(0) benign(0.432) TCGA-86-7701-01 10 72489862 72489862 T A ADAMTS14 Missense_Mutation p.L320Q 0.10 tolerated(0.18) probably_damaging(0.953) TCGA-86-7701-01 10 73588830 73588830 C A PSAP Missense_Mutation p.R127L 0.30 deleterious(0.02) benign(0.33) TCGA-86-7701-01 11 10819410 10819410 A T EIF4G2 Missense_Mutation p.W893R 0.14 deleterious(0) unknown(0) TCGA-86-7701-01 11 13443241 13443241 C G BTBD10 Missense_Mutation p.Q82H 0.06 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-86-7701-01 11 1619527 1619527 G A KRTAP5-2 5'Flank 0.20 TCGA-86-7701-01 11 1944104 1944104 C T TNNT3 5'UTR 0.13 TCGA-86-7701-01 11 19954915 19954915 G C NAV2 Silent p.S398S 0.07 TCGA-86-7701-01 11 30032722 30032722 C T KCNA4 Missense_Mutation p.D502N 0.14 deleterious(0.02) possibly_damaging(0.856) TCGA-86-7701-01 11 47711852 47711852 G A AGBL2 Silent p.S469S 0.29 TCGA-86-7701-01 11 48285958 48285958 G T OR4X1 Silent p.V182V 0.14 TCGA-86-7701-01 11 5153211 5153211 T A OR52A5 Missense_Mutation p.Y221F 0.18 deleterious(0.01) possibly_damaging(0.651) TCGA-86-7701-01 11 58170414 58170414 G T OR5B3 Missense_Mutation p.H157N 0.24 tolerated_low_confidence(0.07) benign(0.033) TCGA-86-7701-01 11 62462041 62462041 G A BSCL2 Missense_Mutation p.S210L 0.17 deleterious(0.03) probably_damaging(0.973) TCGA-86-7701-01 11 66191665 66191665 C A NPAS4 Missense_Mutation p.A435D 0.04 deleterious_low_confidence(0.01) benign(0.031) TCGA-86-7701-01 11 76877182 76877182 C G MYO7A Missense_Mutation p.Q591E 0.58 tolerated(0.65) possibly_damaging(0.897) TCGA-86-7701-01 11 76903146 76903146 G T MYO7A Missense_Mutation p.Q1325H 0.70 deleterious(0) probably_damaging(0.998) TCGA-86-7701-01 11 83182758 83182758 C T DLG2 Missense_Mutation p.R786Q 0.14 deleterious(0.01) probably_damaging(0.995) TCGA-86-7701-01 11 94730894 94730894 G T KDM4D Missense_Mutation p.D120Y 0.16 deleterious(0) probably_damaging(0.977) TCGA-86-7701-01 11 99690359 99690359 G T CNTN5 Missense_Mutation p.G47V 0.11 tolerated_low_confidence(0.05) benign(0.008) TCGA-86-7701-01 12 120135822 120135822 G A CIT Silent p.N1887N 0.04 TCGA-86-7701-01 12 129569171 129569171 G T TMEM132D Missense_Mutation p.T507N 0.18 deleterious(0) possibly_damaging(0.662) TCGA-86-7701-01 12 21391972 21391972 T C SLCO1B1 Missense_Mutation p.I642T 0.67 deleterious(0.02) benign(0.044) TCGA-86-7701-01 12 29786115 29786115 C T TMTC1 Missense_Mutation p.A365T 0.40 tolerated(0.59) benign(0.001) TCGA-86-7701-01 12 49663442 49663442 G T TUBA1C Silent p.V66V 0.20 TCGA-86-7701-01 12 5021140 5021140 C G KCNA1 Missense_Mutation p.T199R 0.13 tolerated(0.6) benign(0.002) TCGA-86-7701-01 12 52962104 52962104 C T KRT74 Missense_Mutation p.A402T 0.29 tolerated(0.08) benign(0.17) TCGA-86-7701-01 12 53097080 53097080 C T KRT77 Missense_Mutation p.G47S 0.22 tolerated(0.11) possibly_damaging(0.855) TCGA-86-7701-01 12 54403325 54403325 C - HOXC8 Frame_Shift_Del p.K87Nfs*43 0.26 TCGA-86-7701-01 12 55356904 55356904 G T TESPA1 Missense_Mutation p.H260N 0.42 tolerated_low_confidence(0.57) benign(0.216) TCGA-86-7701-01 12 55420935 55420935 G T NEUROD4 Missense_Mutation p.G238W 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-86-7701-01 12 57033060 57033060 A C ATP5B Missense_Mutation p.I440S 0.09 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-86-7701-01 12 57863310 57863310 G T GLI1 Missense_Mutation p.G469C 0.29 tolerated(0.07) probably_damaging(1) TCGA-86-7701-01 12 58020455 58020455 G T B4GALNT1 3'UTR 0.26 TCGA-86-7701-01 12 6690767 6690767 C G CHD4 Intron 0.06 TCGA-86-7701-01 12 71977778 71977778 G C LGR5 Missense_Mutation p.G663A 0.17 tolerated(0.31) benign(0.029) TCGA-86-7701-01 13 27332877 27332877 A G GPR12 3'UTR 0.78 TCGA-86-7701-01 13 37678549 37678549 C T CSNK1A1L Missense_Mutation p.R282H 0.13 deleterious_low_confidence(0) benign(0.057) TCGA-86-7701-01 14 106109816 106109816 C G IGHG2 Missense_Mutation p.E235D 0.09 tolerated(0.62) benign(0.005) TCGA-86-7701-01 14 106173826 106173826 C G IGHA1 Silent p.T247T 0.44 TCGA-86-7701-01 14 23794478 23794478 T C BCL2L2-PABPN1 Missense_Mutation p.W329R 0.06 tolerated_low_confidence(0.09) possibly_damaging(0.743) TCGA-86-7701-01 14 24676565 24676565 C A TSSK4 Missense_Mutation p.F228L 0.19 tolerated(0.22) probably_damaging(0.998) TCGA-86-7701-01 14 32142771 32142771 G T NUBPL Missense_Mutation p.L168F 0.14 deleterious(0.02) benign(0.32) TCGA-86-7701-01 14 61446565 61446565 C T TRMT5 Silent p.L17L 0.12 TCGA-86-7701-01 14 71556018 71556018 G A PCNX Missense_Mutation p.V1850I 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-86-7701-01 15 25650638 25650638 G A UBE3A Missense_Mutation p.P14L 0.24 deleterious_low_confidence(0.03) benign(0.004) TCGA-86-7701-01 15 27128526 27128526 G T GABRA5 Nonsense_Mutation p.E107* 0.11 TCGA-86-7701-01 15 33822861 33822861 C A RYR3 Missense_Mutation p.S116R 0.22 probably_damaging(0.995) TCGA-86-7701-01 15 34651828 34651828 T A LPCAT4 Missense_Mutation p.E454V 0.26 deleterious(0) benign(0.005) TCGA-86-7701-01 15 51350395 51350395 C T TNFAIP8L3 Missense_Mutation p.E188K 0.31 deleterious(0.04) possibly_damaging(0.875) TCGA-86-7701-01 15 56757242 56757242 C A MNS1 5'UTR 0.46 TCGA-86-7701-01 15 62991040 62991040 T C TLN2 Missense_Mutation p.S521P 0.06 tolerated(0.31) benign(0.086) TCGA-86-7701-01 15 71229102 71229102 A T LRRC49 Missense_Mutation p.R243S 0.18 tolerated(0.59) benign(0.003) TCGA-86-7701-01 15 89401784 89401784 G T ACAN Missense_Mutation p.G1990W 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-86-7701-01 15 95013670 95013670 G T MCTP2 Missense_Mutation p.W823C 0.35 deleterious(0) probably_damaging(0.999) TCGA-86-7701-01 16 10989620 10989620 C A CIITA Silent p.I98I 0.13 TCGA-86-7701-01 16 15876300 15876300 G T MYH11 Missense_Mutation p.P230Q 0.34 probably_damaging(1) TCGA-86-7701-01 16 2147377 2147377 C A PKD1 Nonsense_Mutation p.E3450* 0.21 TCGA-86-7701-01 16 50759412 50759412 C A NOD2 Missense_Mutation p.N965K 0.13 deleterious(0) probably_damaging(0.995) TCGA-86-7701-01 16 5115926 5115926 C T C16orf89 5'UTR 0.30 TCGA-86-7701-01 16 51173390 51173390 C T SALL1 Missense_Mutation p.G915S 0.19 tolerated(0.12) possibly_damaging(0.677) TCGA-86-7701-01 16 55862829 55862829 T G CES1 Missense_Mutation p.K37T 0.21 tolerated(0.13) benign(0.194) TCGA-86-7701-01 16 57778336 57778336 A G KATNB1 Missense_Mutation p.S68G 0.11 deleterious(0.04) possibly_damaging(0.651) TCGA-86-7701-01 16 68397446 68397446 C T SMPD3 Silent p.T554T 0.09 TCGA-86-7701-01 17 10404775 10404775 C A MYH1 Silent p.R1130R 0.45 TCGA-86-7701-01 17 10429057 10429057 T G MYH2 Missense_Mutation p.N1442H 0.04 deleterious(0.03) benign(0.098) TCGA-86-7701-01 17 33348712 33348712 C A RFFL Missense_Mutation p.R90L 0.41 tolerated(0.41) probably_damaging(0.916) TCGA-86-7701-01 17 33454312 33454312 T A FNDC8 Missense_Mutation p.L154Q 0.42 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-86-7701-01 17 33504085 33504085 C A UNC45B Missense_Mutation p.A694E 0.24 deleterious(0.01) benign(0.242) TCGA-86-7701-01 17 3981275 3981275 A T ZZEF1 Missense_Mutation p.F964Y 0.12 deleterious(0.02) probably_damaging(0.973) TCGA-86-7701-01 17 40714589 40714589 C G COASY Intron 0.44 TCGA-86-7701-01 17 46607047 46607047 C A HOXB1 Missense_Mutation p.M256I 0.42 deleterious(0) probably_damaging(0.985) TCGA-86-7701-01 17 61613174 61613174 G A KCNH6 Missense_Mutation p.A416T 0.41 deleterious(0) probably_damaging(1) TCGA-86-7701-01 17 62781405 62781405 C T hsa-mir-6080 5'Flank 0.49 TCGA-86-7701-01 17 7577058 7577058 C A TP53 Nonsense_Mutation p.E294* 0.45 TCGA-86-7701-01 18 29340057 29340057 A C SLC25A52 Missense_Mutation p.F200V 0.09 deleterious(0) probably_damaging(0.988) TCGA-86-7701-01 18 65180364 65180364 C A DSEL Missense_Mutation p.L504F 0.39 tolerated(0.11) benign(0.008) TCGA-86-7701-01 19 31039823 31039823 C T ZNF536 Silent p.H1099H 0.09 TCGA-86-7701-01 19 35791158 35791158 T G MAG Missense_Mutation p.M274R 0.40 tolerated(0.09) benign(0.272) TCGA-86-7701-01 19 41009787 41009787 C T SPTBN4 Silent p.H471H 0.15 TCGA-86-7701-01 19 45810857 45810857 G A CKM Silent p.L277L 0.15 TCGA-86-7701-01 19 52394419 52394419 C A ZNF649 Nonsense_Mutation p.G324* 0.14 TCGA-86-7701-01 19 54081028 54081028 A T ZNF331 Missense_Mutation p.H405L 0.41 deleterious(0) probably_damaging(0.993) TCGA-86-7701-01 19 54515421 54515421 A G CACNG6 Missense_Mutation p.K254R 0.21 tolerated(0.19) benign(0.043) TCGA-86-7701-01 19 54611370 54611370 G A TFPT Missense_Mutation p.A202V 0.20 tolerated(0.47) benign(0.003) TCGA-86-7701-01 19 56895292 56895292 T A ZNF582 Missense_Mutation p.R498S 0.11 deleterious(0.04) benign(0.034) TCGA-86-7701-01 19 8808746 8808746 G T ACTL9 Silent p.A102A 0.31 TCGA-86-7701-01 19 9046316 9046316 G T MUC16 Missense_Mutation p.A11772D 0.32 benign(0.044) TCGA-86-7701-01 19 9074336 9074336 G T MUC16 Missense_Mutation p.S4370R 0.45 unknown(0) TCGA-86-7701-01 1 115215875 115215875 C A AMPD1 Missense_Mutation p.G735C 0.14 deleterious(0) probably_damaging(1) TCGA-86-7701-01 1 152327618 152327618 A G FLG2 Missense_Mutation p.S882P 0.12 unknown(0) TCGA-86-7701-01 1 153659772 153659772 G A NPR1 Missense_Mutation p.D678N 0.33 deleterious(0.02) probably_damaging(1) TCGA-86-7701-01 1 153921739 153921739 C A CRTC2 Missense_Mutation p.G509V 0.40 tolerated(0.46) probably_damaging(0.994) TCGA-86-7701-01 1 154437868 154437868 G A IL6R 3'UTR 0.41 TCGA-86-7701-01 1 154988740 154988740 G T ZBTB7B Missense_Mutation p.R434L 0.14 deleterious(0) probably_damaging(0.979) TCGA-86-7701-01 1 159505080 159505080 A T OR10J5 Missense_Mutation p.C240S 0.09 deleterious(0.01) possibly_damaging(0.483) TCGA-86-7701-01 1 17402183 17402183 G - PADI2 Frame_Shift_Del p.G483Afs*39 0.13 TCGA-86-7701-01 1 200945903 200945903 C G KIF21B Splice_Site p.X1481_splice 0.12 TCGA-86-7701-01 1 201779821 201779821 C A NAV1 Missense_Mutation p.R1578S 0.11 deleterious(0.01) probably_damaging(0.975) TCGA-86-7701-01 1 207643305 207643305 G A CR2 Missense_Mutation p.M361I 0.07 tolerated(1) benign(0) TCGA-86-7701-01 1 21009225 21009225 C A KIF17 Missense_Mutation p.W795L 0.22 tolerated(0.17) probably_damaging(0.999) TCGA-86-7701-01 1 226065270 226065270 G A TMEM63A Missense_Mutation p.S4F 0.10 tolerated_low_confidence(0.35) benign(0.002) TCGA-86-7701-01 1 29189269 29189269 G T OPRD1 Missense_Mutation p.C198F 0.21 deleterious(0) probably_damaging(1) TCGA-86-7701-01 1 41300770 41300770 G C KCNQ4 Missense_Mutation p.R582P 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-86-7701-01 1 55075139 55075139 G T FAM151A Missense_Mutation p.S520R 0.18 deleterious(0.04) probably_damaging(0.938) TCGA-86-7701-01 1 68942745 68942745 T A DEPDC1 Missense_Mutation p.K769M 0.15 deleterious(0) probably_damaging(0.945) TCGA-86-7701-01 1 7723642 7723642 C T CAMTA1 Silent p.S345S 0.16 TCGA-86-7701-01 1 82409266 82409266 G T LPHN2 Missense_Mutation p.K337N 0.18 deleterious(0.02) benign(0.24) TCGA-86-7701-01 1 9063388 9063388 C A SLC2A7 Missense_Mutation p.A504S 0.35 tolerated(0.62) benign(0) TCGA-86-7701-01 20 21687131 21687131 C A PAX1 Silent p.P114P 0.35 TCGA-86-7701-01 20 33122512 33122512 C T DYNLRB1 Missense_Mutation p.R54W 0.09 deleterious(0.01) benign(0.288) TCGA-86-7701-01 20 36147254 36147254 C G BLCAP 3'UTR 0.34 TCGA-86-7701-01 20 57766072 57766072 G A ZNF831 5'Flank 0.14 TCGA-86-7701-01 20 61150840 61150840 A G C20orf166 5'UTR 0.56 TCGA-86-7701-01 21 19687575 19687575 T C TMPRSS15 Splice_Site p.X641_splice 0.50 TCGA-86-7701-01 21 44840290 44840290 G A SIK1 Missense_Mutation p.R266C 0.15 deleterious(0) probably_damaging(1) TCGA-86-7701-01 21 45744486 45744486 G T PFKL Missense_Mutation p.G588V 0.36 deleterious(0) probably_damaging(1) TCGA-86-7701-01 21 46066372 46066372 C A KRTAP10-11 5'UTR 0.36 TCGA-86-7701-01 22 19444129 19444129 G C UFD1L Missense_Mutation p.A220G 0.15 tolerated(0.25) benign(0.001) TCGA-86-7701-01 22 24574118 24574118 C T CABIN1 Missense_Mutation p.S2206L 0.19 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-86-7701-01 22 26707786 26707786 T C SEZ6L Silent p.T578T 0.21 TCGA-86-7701-01 22 29196033 29196033 C G XBP1 Intron 0.26 TCGA-86-7701-01 22 32500780 32500780 G A SLC5A1 Missense_Mutation p.R558H 0.17 deleterious(0.02) benign(0.079) TCGA-86-7701-01 22 35742927 35742927 A G TOM1 Missense_Mutation p.N430S 0.46 tolerated(0.1) benign(0.008) TCGA-86-7701-01 22 47069608 47069608 G A GRAMD4 Silent p.P427P 0.08 TCGA-86-7701-01 2 109546685 109546685 C A EDAR Missense_Mutation p.C22F 0.19 tolerated_low_confidence(0.58) benign(0.008) TCGA-86-7701-01 2 128861574 128861574 C A UGGT1 Nonsense_Mutation p.S88* 0.17 TCGA-86-7701-01 2 135743722 135743722 G T MAP3K19 Missense_Mutation p.S907Y 0.20 deleterious(0) possibly_damaging(0.8) TCGA-86-7701-01 2 166613653 166613653 A C GALNT3 Missense_Mutation p.I432M 0.13 deleterious(0) probably_damaging(0.997) TCGA-86-7701-01 2 1906916 1906916 A G MYT1L Silent p.Y654Y 0.30 TCGA-86-7701-01 2 207175447 207175447 C A ZDBF2 Silent p.P2065P 0.18 TCGA-86-7701-01 2 209028094 209028094 T C CRYGA Missense_Mutation p.Y29C 0.05 tolerated(0.06) benign(0.078) TCGA-86-7701-01 2 226447663 226447663 G A NYAP2 Silent p.P510P 0.15 TCGA-86-7701-01 2 228881643 228881643 C G SPHKAP Silent p.T1309T 0.16 TCGA-86-7701-01 2 229046359 229046359 G C SPHKAP 5'UTR 0.49 TCGA-86-7701-01 2 28761239 28761239 G T PLB1 Silent p.L203L 0.23 TCGA-86-7701-01 2 29296593 29296593 G C C2orf71 Missense_Mutation p.P179A 0.20 tolerated(0.15) benign(0.121) TCGA-86-7701-01 2 36970274 36970274 C A VIT Silent p.A50A 0.10 TCGA-86-7701-01 2 37028445 37028445 G A VIT Missense_Mutation p.D354N 0.13 tolerated(0.05) benign(0.222) TCGA-86-7701-01 2 48874171 48874171 T C STON1-GTF2A1L Missense_Mutation p.V1027A 0.22 tolerated(0.93) benign(0.257) TCGA-86-7701-01 2 50280522 50280522 T A NRXN1 Missense_Mutation p.T1379S 0.29 tolerated(0.33) benign(0.044) TCGA-86-7701-01 2 60773316 60773316 C A BCL11A Missense_Mutation p.D59Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-86-7701-01 2 60773317 60773317 C G BCL11A Silent p.G58G 0.29 TCGA-86-7701-01 2 79384822 79384822 G A REG3A Silent p.G112G 0.40 TCGA-86-7701-01 2 90139456 90139456 T G IGKV1D-16 Missense_Mutation p.L76W 0.06 deleterious(0) possibly_damaging(0.628) TCGA-86-7701-01 3 108572480 108572480 C A TRAT1 Missense_Mutation p.T106K 0.26 tolerated(0.93) benign(0.017) TCGA-86-7701-01 3 123018992 123018992 C A ADCY5 Missense_Mutation p.D959Y 0.60 tolerated(0.06) possibly_damaging(0.663) TCGA-86-7701-01 3 1269671 1269671 T - CNTN6 Frame_Shift_Del p.F118Lfs*81 0.35 TCGA-86-7701-01 3 147120593 147120593 T A ZIC4 Missense_Mutation p.S48C 0.51 deleterious_low_confidence(0.05) benign(0.024) TCGA-86-7701-01 3 169485598 169485598 G T ACTRT3 Silent p.L247L 0.22 TCGA-86-7701-01 3 19491633 19491633 G T KCNH8 Missense_Mutation p.A471S 0.39 deleterious(0.01) probably_damaging(0.957) TCGA-86-7701-01 3 36485097 36485097 C A STAC Missense_Mutation p.P118H 0.28 tolerated(0.09) probably_damaging(0.995) TCGA-86-7701-01 3 36485098 36485098 C A STAC Silent p.P118P 0.29 TCGA-86-7701-01 3 37033441 37033441 T C EPM2AIP1 Silent p.Q376Q 0.49 TCGA-86-7701-01 3 43121155 43121155 C - POMGNT2 3'UTR 0.31 TCGA-86-7701-01 3 74347306 74347306 C G CNTN3 Missense_Mutation p.G735R 0.40 deleterious(0) probably_damaging(1) TCGA-86-7701-01 4 109000667 109000667 C G LEF1 Missense_Mutation p.D276H 0.13 deleterious(0.02) possibly_damaging(0.713) TCGA-86-7701-01 4 128804496 128804496 A G PLK4 Missense_Mutation p.H69R 0.14 deleterious(0) probably_damaging(1) TCGA-86-7701-01 4 138451598 138451598 C A PCDH18 Missense_Mutation p.D549Y 0.24 deleterious(0) probably_damaging(1) TCGA-86-7701-01 4 155785 155785 A T ZNF718 RNA 0.45 TCGA-86-7701-01 4 169602547 169602547 A G PALLD Silent p.P384P 0.22 TCGA-86-7701-01 4 6864324 6864324 G T KIAA0232 Missense_Mutation p.A739S 0.38 tolerated(0.25) benign(0.033) TCGA-86-7701-01 4 69512953 69512953 G T UGT2B15 Missense_Mutation p.Q488K 0.17 deleterious(0) probably_damaging(1) TCGA-86-7701-01 4 70146308 70146308 C A UGT2B28 Silent p.T30T 0.13 TCGA-86-7701-01 4 73179510 73179510 C T ADAMTS3 Silent p.K543K 0.13 TCGA-86-7701-01 4 82125782 82125782 A T PRKG2 Silent p.P140P 0.31 TCGA-86-7701-01 5 140176003 140176003 A G PCDHA2 Missense_Mutation p.Q485R 0.06 tolerated_low_confidence(0.1) benign(0.093) TCGA-86-7701-01 5 140209862 140209862 A T PCDHA6 Missense_Mutation p.E729V 0.20 deleterious_low_confidence(0.02) benign(0.025) TCGA-86-7701-01 5 140563087 140563087 G C PCDHB16 Missense_Mutation p.R318P 0.11 deleterious_low_confidence(0.01) benign(0.006) TCGA-86-7701-01 5 140736185 140736185 C A PCDHGA4 Missense_Mutation p.S473Y 0.18 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-86-7701-01 5 140755817 140755817 C A PCDHGA6 Missense_Mutation p.R723S 0.30 deleterious_low_confidence(0.03) benign(0.027) TCGA-86-7701-01 5 156915443 156915443 G T ADAM19 Missense_Mutation p.P794T 0.36 tolerated(0.07) possibly_damaging(0.881) TCGA-86-7701-01 5 158158077 158158077 C A EBF1 Missense_Mutation p.K375N 0.29 deleterious(0) probably_damaging(0.999) TCGA-86-7701-01 5 167645264 167645264 C T TENM2 Silent p.C1456C 0.36 TCGA-86-7701-01 5 178359519 178359519 G C ZFP2 Missense_Mutation p.R402T 0.10 deleterious(0.01) probably_damaging(0.974) TCGA-86-7701-01 5 33577018 33577018 G T ADAMTS12 Missense_Mutation p.P1038H 0.16 tolerated(0.09) probably_damaging(0.94) TCGA-86-7701-01 5 35857042 35857042 G A IL7R 5'UTR 0.34 TCGA-86-7701-01 5 37370993 37370993 G A NUP155 Silent p.L29L 0.22 TCGA-86-7701-01 5 71494034 71494034 T C MAP1B Missense_Mutation p.S1618P 0.15 probably_damaging(0.997) TCGA-86-7701-01 5 75587140 75587140 G T SV2C Missense_Mutation p.R411L 0.31 tolerated(0.74) benign(0.036) TCGA-86-7701-01 5 75991309 75991309 C A IQGAP2 Missense_Mutation p.R1342S 0.15 deleterious(0.02) possibly_damaging(0.749) TCGA-86-7701-01 5 76028263 76028263 A T F2R Missense_Mutation p.L71F 0.12 tolerated(0.29) benign(0.002) TCGA-86-7701-01 5 76028264 76028264 G T F2R Missense_Mutation p.V72F 0.12 tolerated(0.08) benign(0.035) TCGA-86-7701-01 5 92924056 92924056 C A NR2F1 Silent p.I299I 0.39 TCGA-86-7701-01 6 10430313 10430313 C A LINC00518 RNA 0.49 TCGA-86-7701-01 6 170627219 170627219 A G FAM120B Silent p.L247L 0.47 TCGA-86-7701-01 6 30071215 30071215 A C TRIM31 3'UTR 0.07 TCGA-86-7701-01 6 32138419 32138419 G A AGPAT1 Intron 0.28 TCGA-86-7701-01 6 34101066 34101066 G T GRM4 Missense_Mutation p.L70I 0.40 tolerated(1) probably_damaging(0.99) TCGA-86-7701-01 6 46672997 46672997 G C PLA2G7 Missense_Mutation p.T361S 0.06 tolerated(0.19) benign(0.074) TCGA-86-7701-01 6 51893100 51893100 A T PKHD1 Missense_Mutation p.D1138E 0.07 tolerated(0.17) benign(0.018) TCGA-86-7701-01 6 52053913 52053913 G T IL17A Missense_Mutation p.L97F 0.44 tolerated(0.7) benign(0.158) TCGA-86-7701-01 6 52053914 52053914 G T IL17A Missense_Mutation p.G98C 0.42 deleterious(0.01) probably_damaging(0.98) TCGA-86-7701-01 6 7370188 7370188 A G CAGE1 Silent p.S619S 0.37 TCGA-86-7701-01 6 75898122 75898122 G T COL12A1 Nonsense_Mutation p.S318* 0.38 TCGA-86-7701-01 6 75994172 75994172 G T TMEM30A Missense_Mutation p.F61L 0.12 deleterious(0) probably_damaging(0.972) TCGA-86-7701-01 7 11630198 11630198 G A THSD7A Missense_Mutation p.R448C 0.32 deleterious(0.01) probably_damaging(0.972) TCGA-86-7701-01 7 117375356 117375356 G A CTTNBP2 Missense_Mutation p.R1219C 0.13 deleterious(0.01) probably_damaging(0.931) TCGA-86-7701-01 7 123101456 123101456 T C IQUB Silent p.T654T 0.15 TCGA-86-7701-01 7 127342493 127342493 C G SND1 Missense_Mutation p.I198M 0.09 deleterious(0) possibly_damaging(0.863) TCGA-86-7701-01 7 128494262 128494262 A C FLNC Missense_Mutation p.Q2240P 0.20 tolerated(0.31) benign(0.179) TCGA-86-7701-01 7 131925833 131925833 C T PLXNA4 Silent p.L532L 0.22 TCGA-86-7701-01 7 154672598 154672598 G T DPP6 Silent p.R693R 0.35 TCGA-86-7701-01 7 23871859 23871859 A G STK31 Silent p.Q978Q 0.10 TCGA-86-7701-01 7 27211447 27211447 G T HOXA10 3'UTR 0.29 TCGA-86-7701-01 7 3998580 3998580 G T SDK1 Missense_Mutation p.A390S 0.24 tolerated(0.42) benign(0.028) TCGA-86-7701-01 7 45143786 45143786 C A TBRG4 Missense_Mutation p.S326I 0.30 deleterious(0.04) benign(0.379) TCGA-86-7701-01 7 55914312 55914312 G T SEPT14 Missense_Mutation p.R25S 0.33 deleterious(0) possibly_damaging(0.762) TCGA-86-7701-01 7 82390736 82390736 T A PCLO Silent p.I5027I 0.31 TCGA-86-7701-01 7 99097322 99097322 C A ZNF394 Missense_Mutation p.G132V 0.27 deleterious(0.02) probably_damaging(0.997) TCGA-86-7701-01 8 101149819 101149819 T A FBXO43 Missense_Mutation p.I550F 0.16 deleterious(0) benign(0.141) TCGA-86-7701-01 8 10466437 10466437 T A RP1L1 Missense_Mutation p.Q1724L 0.32 unknown(0) TCGA-86-7701-01 8 113304885 113304886 CC AAA CSMD3 Frame_Shift_Ins p.G2890Ffs*5 0.20 TCGA-86-7701-01 8 113599308 113599308 C A CSMD3 Missense_Mutation p.G1291V 0.34 deleterious(0.01) possibly_damaging(0.903) TCGA-86-7701-01 8 121170434 121170434 G C COL14A1 Missense_Mutation p.A52P 0.10 tolerated(0.24) benign(0.005) TCGA-86-7701-01 8 123965337 123965337 C T ZHX2 Silent p.A529A 0.09 TCGA-86-7701-01 8 142490535 142490535 G T MROH5 3'UTR 0.21 TCGA-86-7701-01 8 2092778 2092778 A G MYOM2 Missense_Mutation p.Y1424C 0.13 deleterious(0) probably_damaging(0.973) TCGA-86-7701-01 8 27311715 27311715 G T PTK2B Silent p.V880V 0.30 TCGA-86-7701-01 8 38173510 38173510 C T WHSC1L1 Missense_Mutation p.A636T 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-86-7701-01 8 67040549 67040549 C G TRIM55 Missense_Mutation p.P60R 0.26 deleterious(0.01) possibly_damaging(0.762) TCGA-86-7701-01 8 70594561 70594561 G T SLCO5A1 Missense_Mutation p.P547H 0.15 deleterious(0.04) possibly_damaging(0.793) TCGA-86-7701-01 8 72936135 72936135 A C TRPA1 Missense_Mutation p.C1021W 0.06 tolerated(0.18) benign(0.155) TCGA-86-7701-01 8 73480045 73480045 G T KCNB2 Missense_Mutation p.D26Y 0.14 deleterious(0) possibly_damaging(0.498) TCGA-86-7701-01 8 75227127 75227127 C T JPH1 Missense_Mutation p.A370T 0.07 deleterious(0) probably_damaging(0.976) TCGA-86-7701-01 8 77616573 77616573 G T ZFHX4 Nonsense_Mutation p.E84* 0.33 TCGA-86-7701-01 8 77763811 77763811 C G ZFHX4 Missense_Mutation p.Q1552E 0.14 benign(0.092) TCGA-86-7701-01 8 99591989 99591989 A C STK3 Missense_Mutation p.V312G 0.38 tolerated(0.45) benign(0.081) TCGA-86-7701-01 9 126165745 126165745 C A DENND1A Missense_Mutation p.V505F 0.21 deleterious(0.03) benign(0.197) TCGA-86-7701-01 9 132566479 132566479 C G TOR1B Silent p.G109G 0.08 TCGA-86-7701-01 9 140952585 140952585 G T CACNA1B Silent p.V1397V 0.10 TCGA-86-7701-01 9 14658885 14658885 C A ZDHHC21 Missense_Mutation p.W122C 0.34 deleterious(0.03) probably_damaging(1) TCGA-86-7701-01 9 32631721 32631721 C T TAF1L Missense_Mutation p.C1286Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-86-7701-01 9 33923984 33923984 A C UBAP2 Missense_Mutation p.F869V 0.08 deleterious(0) unknown(0) TCGA-86-7701-01 9 96021231 96021231 G A WNK2 Missense_Mutation p.V801M 0.18 unknown(0) TCGA-86-7701-01 X 127185797 127185797 A T ACTRT1 Missense_Mutation p.F130Y 0.57 deleterious(0.01) possibly_damaging(0.787) TCGA-86-7701-01 X 128945479 128945479 C A ZDHHC9 Nonsense_Mutation p.G262* 0.70 TCGA-86-7701-01 X 131212726 131212726 C T FRMD7 Missense_Mutation p.R440K 0.60 tolerated(0.17) benign(0.011) TCGA-86-7701-01 X 138644049 138644049 G C F9 Missense_Mutation p.G402A 0.20 tolerated(0.28) probably_damaging(0.957) TCGA-86-7701-01 X 148796188 148796188 C A MAGEA11 Silent p.A48A 0.66 TCGA-86-7701-01 X 153130294 153130294 C G L1CAM Missense_Mutation p.G1010R 0.06 tolerated(0.07) benign(0.424) TCGA-86-7701-01 X 153664066 153664066 C T ATP6AP1 Silent p.Y414Y 0.06 TCGA-86-7701-01 X 1584494 1584494 T A P2RY8 Missense_Mutation p.T320S 0.13 tolerated(0.99) benign(0.002) TCGA-86-7701-01 X 3235282 3235282 C A MXRA5 Missense_Mutation p.R2147L 0.67 deleterious(0.01) possibly_damaging(0.901) TCGA-86-7701-01 X 73963407 73963407 T A KIAA2022 Missense_Mutation p.M329L 0.67 tolerated_low_confidence(0.3) benign(0.298) TCGA-86-7711-01 10 103339491 103339491 C A POLL Missense_Mutation p.G483W 0.34 deleterious(0) probably_damaging(0.928) TCGA-86-7711-01 10 124045739 124045739 A T BTBD16 Missense_Mutation p.R121W 0.29 deleterious(0) possibly_damaging(0.846) TCGA-86-7711-01 10 126631778 126631778 T C ZRANB1 Missense_Mutation p.V239A 0.31 tolerated(0.48) benign(0.002) TCGA-86-7711-01 10 135203163 135203163 G T PAOX Missense_Mutation p.G435V 0.32 deleterious(0) probably_damaging(1) TCGA-86-7711-01 10 22830773 22830773 G A PIP4K2A Silent p.F332F 0.14 TCGA-86-7711-01 10 6066217 6066217 C A IL2RA Silent p.A119A 0.36 TCGA-86-7711-01 10 96443565 96443565 G C CYP2C18 5'UTR 0.20 TCGA-86-7711-01 10 98157009 98157009 G T TLL2 Silent p.R440R 0.26 TCGA-86-7711-01 10 98469396 98469396 G - PIK3AP1 Frame_Shift_Del p.H120Ifs*18 0.31 TCGA-86-7711-01 11 102395737 102395737 C T MMP7 Silent p.A181A 0.12 TCGA-86-7711-01 11 103048546 103048546 C A DYNC2H1 Missense_Mutation p.Q2046K 0.32 benign(0.006) TCGA-86-7711-01 11 105795189 105795189 C T GRIA4 Missense_Mutation p.S514F 0.23 deleterious(0.01) benign(0.188) TCGA-86-7711-01 11 108357018 108357018 T A KDELC2 Nonsense_Mutation p.K184* 0.22 TCGA-86-7711-01 11 108382087 108382087 T A EXPH5 Nonsense_Mutation p.K1383* 0.17 TCGA-86-7711-01 11 111908007 111908007 A T DLAT Silent p.V266V 0.19 TCGA-86-7711-01 11 113802135 113802135 T G HTR3B Missense_Mutation p.S81R 0.14 tolerated(0.11) probably_damaging(0.961) TCGA-86-7711-01 11 113803761 113803761 C T HTR3B Silent p.S214S 0.11 TCGA-86-7711-01 11 124440819 124440819 C A OR8A1 Silent p.T285T 0.16 TCGA-86-7711-01 11 47311714 47311714 G T MADD Missense_Mutation p.K1006N 0.25 tolerated(0.16) possibly_damaging(0.821) TCGA-86-7711-01 11 5221714 5221714 A G OR51V1 Missense_Mutation p.S73P 0.14 deleterious(0) benign(0.009) TCGA-86-7711-01 11 57995760 57995760 G T OR10Q1 Missense_Mutation p.D196E 0.21 deleterious(0.01) possibly_damaging(0.895) TCGA-86-7711-01 11 5809516 5809516 G T OR52N1 Silent p.P177P 0.23 TCGA-86-7711-01 11 59421465 59421465 T C PATL1 Missense_Mutation p.Q371R 0.12 tolerated(0.3) possibly_damaging(0.5) TCGA-86-7711-01 11 64329845 64329845 G T SLC22A11 Silent p.R253R 0.13 TCGA-86-7711-01 11 67120164 67120164 G A POLD4 Silent p.C99C 0.20 TCGA-86-7711-01 11 67804059 67804059 G A NDUFS8 Silent p.%3D 0.42 TCGA-86-7711-01 11 71944745 71944745 G T INPPL1 Silent p.G723G 0.18 TCGA-86-7711-01 11 73803558 73803558 T G C2CD3 Silent p.V1140V 0.20 TCGA-86-7711-01 11 76507127 76507127 A T TSKU Missense_Mutation p.Q156L 0.14 deleterious(0.01) benign(0.108) TCGA-86-7711-01 12 109283310 109283310 C A DAO Missense_Mutation p.F125L 0.11 deleterious(0) possibly_damaging(0.833) TCGA-86-7711-01 12 110488903 110488903 C T C12orf76 Intron 0.13 TCGA-86-7711-01 12 112326352 112326352 G A MAPKAPK5 Missense_Mutation p.D344N 0.17 tolerated(0.25) possibly_damaging(0.476) TCGA-86-7711-01 12 112926931 112926931 G T PTPN11 Silent p.A517A 0.16 TCGA-86-7711-01 12 113448305 113448305 C T OAS2 3'UTR 0.15 TCGA-86-7711-01 12 113531362 113531362 T C DTX1 Missense_Mutation p.L341P 0.27 deleterious(0.03) benign(0.005) TCGA-86-7711-01 12 12300342 12300342 C A LRP6 Missense_Mutation p.A1119S 0.15 tolerated(0.16) benign(0.165) TCGA-86-7711-01 12 130883660 130883660 G C RIMBP2 3'UTR 0.11 TCGA-86-7711-01 12 132262642 132262642 T A SFSWAP Silent p.T725T 0.08 TCGA-86-7711-01 12 18858129 18858129 C T PLCZ1 Missense_Mutation p.D279N 0.16 tolerated(0.19) benign(0.033) TCGA-86-7711-01 12 27234391 27234391 G A C12orf71 Nonsense_Mutation p.Q176* 0.17 TCGA-86-7711-01 12 2968621 2968621 G A FOXM1 Missense_Mutation p.P530L 0.11 tolerated(0.09) benign(0.024) TCGA-86-7711-01 12 4702241 4702241 G C DYRK4 Missense_Mutation p.W64C 0.14 deleterious(0) probably_damaging(0.998) TCGA-86-7711-01 12 50594612 50594612 T A LIMA1 Missense_Mutation p.E307V 0.17 deleterious(0) probably_damaging(0.993) TCGA-86-7711-01 12 51121554 51121554 G C DIP2B Missense_Mutation p.D1157H 0.16 deleterious(0) probably_damaging(1) TCGA-86-7711-01 12 53218032 53218032 G T KRT79 Missense_Mutation p.L324M 0.17 deleterious(0.04) possibly_damaging(0.657) TCGA-86-7711-01 12 53819292 53819292 A G AMHR2 Missense_Mutation p.R186G 0.15 tolerated(0.46) unknown(0) TCGA-86-7711-01 12 55026152 55026152 T A LACRT Missense_Mutation p.E42D 0.18 tolerated_low_confidence(0.32) benign(0.388) TCGA-86-7711-01 12 56574782 56574782 C G SMARCC2 Missense_Mutation p.E354Q 0.16 tolerated(0.07) benign(0.403) TCGA-86-7711-01 12 56638476 56638476 C A ANKRD52 Silent p.A894A 0.10 TCGA-86-7711-01 12 73046870 73046870 G A TRHDE Missense_Mutation p.R928Q 0.15 tolerated(0.09) benign(0.32) TCGA-86-7711-01 12 8212518 8212518 C G C3AR1 Missense_Mutation p.W88C 0.16 deleterious(0) probably_damaging(1) TCGA-86-7711-01 13 114107628 114107628 C G ADPRHL1 Missense_Mutation p.G42A 0.20 deleterious(0.01) possibly_damaging(0.591) TCGA-86-7711-01 13 23808796 23808796 A C SGCG Missense_Mutation p.E81A 0.16 deleterious(0) probably_damaging(0.923) TCGA-86-7711-01 13 84454623 84454623 G T SLITRK1 Silent p.P340P 0.20 TCGA-86-7711-01 13 94680120 94680120 C G GPC6 Missense_Mutation p.D283E 0.14 deleterious(0.05) benign(0.097) TCGA-86-7711-01 14 31382833 31382833 C A STRN3 Missense_Mutation p.G424V 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-86-7711-01 14 79175737 79175737 C T NRXN3 Missense_Mutation p.R94C 0.14 deleterious(0.04) probably_damaging(0.994) TCGA-86-7711-01 15 23890546 23890546 T G MAGEL2 Missense_Mutation p.T179P 0.14 tolerated(0.07) benign(0.01) TCGA-86-7711-01 15 25940215 25940215 T A ATP10A Nonsense_Mutation p.K947* 0.14 TCGA-86-7711-01 15 43494131 43494131 G A EPB42 Silent p.V638V 0.11 TCGA-86-7711-01 15 72691225 72691225 T C TMEM202 Missense_Mutation p.W105R 0.07 deleterious(0) probably_damaging(0.999) TCGA-86-7711-01 15 72691226 72691226 G T TMEM202 Missense_Mutation p.W105L 0.07 deleterious(0) probably_damaging(0.999) TCGA-86-7711-01 15 75909787 75909787 C T SNUPN Missense_Mutation p.D89N 0.17 tolerated(0.06) possibly_damaging(0.71) TCGA-86-7711-01 15 78487059 78487059 A T ACSBG1 Missense_Mutation p.L81Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-86-7711-01 15 83222209 83222209 C T CPEB1 Intron 0.15 TCGA-86-7711-01 15 86312771 86312771 C A KLHL25 Missense_Mutation p.D91Y 0.20 deleterious(0) possibly_damaging(0.797) TCGA-86-7711-01 15 88679220 88679220 C G NTRK3 Missense_Mutation p.V273L 0.07 tolerated(0.22) benign(0.1) TCGA-86-7711-01 15 89056235 89056235 T C DET1 Missense_Mutation p.R545G 0.11 deleterious(0.01) probably_damaging(0.987) TCGA-86-7711-01 15 91019960 91019960 G T IQGAP1 Missense_Mutation p.M950I 0.28 tolerated(0.47) benign(0.001) TCGA-86-7711-01 15 91019961 91019961 A T IQGAP1 Missense_Mutation p.I951L 0.27 tolerated(1) benign(0) TCGA-86-7711-01 16 20451726 20451726 C A ACSM5 Silent p.R573R 0.14 TCGA-86-7711-01 16 30500676 30500676 A G ITGAL Silent p.P394P 0.19 TCGA-86-7711-01 16 3634823 3634823 C T SLX4 Silent p.P1562P 0.15 TCGA-86-7711-01 16 4920857 4920857 G C UBN1 Missense_Mutation p.E481D 0.23 tolerated(0.07) probably_damaging(0.997) TCGA-86-7711-01 16 78466626 78466626 G T WWOX Missense_Mutation p.A345S 0.13 deleterious(0.04) benign(0.065) TCGA-86-7711-01 17 31322657 31322657 C T SPACA3 Missense_Mutation p.L89F 0.14 deleterious(0.01) benign(0.024) TCGA-86-7711-01 17 33768259 33768259 C T SLFN13 Silent p.K683K 0.12 TCGA-86-7711-01 17 36872846 36872846 G A MLLT6 Silent p.A421A 0.17 TCGA-86-7711-01 17 36997588 36997588 C A C17orf98 Missense_Mutation p.G19W 0.13 deleterious(0.02) probably_damaging(0.979) TCGA-86-7711-01 17 38187810 38187811 TG C MED24 Frame_Shift_Del p.D349Efs*61 0.10 TCGA-86-7711-01 17 4534833 4534833 C A ALOX15 3'UTR 0.16 TCGA-86-7711-01 17 45891148 45891148 C T OSBPL7 Silent p.P468P 0.23 TCGA-86-7711-01 17 47903416 47903416 C T KAT7 Missense_Mutation p.S512L 0.17 deleterious(0) possibly_damaging(0.891) TCGA-86-7711-01 17 4862940 4862940 T A SPAG7 Splice_Site p.X192_splice 0.11 TCGA-86-7711-01 17 56277677 56277677 G A EPX Silent p.R543R 0.13 TCGA-86-7711-01 17 56291678 56291678 C G MKS1 Missense_Mutation p.V196L 0.17 tolerated(0.13) benign(0.038) TCGA-86-7711-01 17 67190529 67190529 C T ABCA10 Missense_Mutation p.E448K 0.07 tolerated(0.71) benign(0.085) TCGA-86-7711-01 17 73831963 73831963 G A UNC13D Silent p.S523S 0.12 TCGA-86-7711-01 17 7578403 7578403 C A TP53 Missense_Mutation p.C176F 0.15 deleterious(0) probably_damaging(0.993) TCGA-86-7711-01 18 10550089 10550089 C T NAPG Silent p.L271L 0.16 TCGA-86-7711-01 18 10696235 10696235 G T PIEZO2 Missense_Mutation p.P2230T 0.11 deleterious(0) probably_damaging(0.995) TCGA-86-7711-01 18 14104974 14104974 C - ZNF519 Frame_Shift_Del p.G522Afs*15 0.10 TCGA-86-7711-01 18 28983544 28983544 T C DSG4 Missense_Mutation p.V528A 0.21 deleterious(0.01) probably_damaging(0.919) TCGA-86-7711-01 18 32407596 32407596 C G DTNA Missense_Mutation p.F347L 0.14 tolerated(0.86) benign(0.001) TCGA-86-7711-01 18 48252510 48252510 G C MAPK4 Missense_Mutation p.Q344H 0.11 tolerated(0.67) probably_damaging(0.986) TCGA-86-7711-01 18 74649240 74649240 G C ZNF236 Missense_Mutation p.D1573H 0.38 deleterious(0) probably_damaging(0.942) TCGA-86-7711-01 18 77227581 77227581 C T NFATC1 Silent p.N684N 0.16 TCGA-86-7711-01 19 10218400 10218400 G A PPAN Intron 0.21 TCGA-86-7711-01 19 11105504 11105504 G T SMARCA4 Nonsense_Mutation p.E474* 0.14 TCGA-86-7711-01 19 14513644 14513644 T A CD97 Missense_Mutation p.D473E 0.24 tolerated(1) benign(0.002) TCGA-86-7711-01 19 14581019 14581019 G A PKN1 Missense_Mutation p.E786K 0.24 deleterious(0) probably_damaging(0.997) TCGA-86-7711-01 19 14866636 14866636 C G EMR2 Missense_Mutation p.E416Q 0.11 tolerated(0.06) possibly_damaging(0.564) TCGA-86-7711-01 19 23836866 23836866 C A ZNF675 Missense_Mutation p.G290V 0.12 deleterious(0.01) probably_damaging(1) TCGA-86-7711-01 19 23836867 23836867 C A ZNF675 Missense_Mutation p.G290C 0.11 deleterious(0.02) probably_damaging(1) TCGA-86-7711-01 19 40368434 40368434 T A FCGBP Missense_Mutation p.K4305M 0.15 probably_damaging(0.976) TCGA-86-7711-01 19 40392512 40392512 G C FCGBP Silent p.L2664L 0.19 TCGA-86-7711-01 19 44571045 44571045 G T ZNF223 Missense_Mutation p.R355L 0.28 tolerated(0.37) benign(0.009) TCGA-86-7711-01 19 52569554 52569554 T A ZNF841 Missense_Mutation p.L527F 0.35 tolerated(0.68) benign(0.108) TCGA-86-7711-01 19 54664630 54664630 A C TMC4 Missense_Mutation p.L659R 0.14 deleterious(0) probably_damaging(0.998) TCGA-86-7711-01 19 56321040 56321040 G - NLRP11 Frame_Shift_Del p.F313Lfs*37 0.13 TCGA-86-7711-01 19 6848029 6848029 G A VAV1 Missense_Mutation p.R678Q 0.27 deleterious(0) benign(0.315) TCGA-86-7711-01 1 100527433 100527433 G A HIAT1 Silent p.V138V 0.09 TCGA-86-7711-01 1 110882321 110882321 C G RBM15 Silent p.L98L 0.30 TCGA-86-7711-01 1 110884339 110884340 - T RBM15 Frame_Shift_Ins p.G772Wfs*38 0.21 TCGA-86-7711-01 1 112524485 112524485 C T KCND3 Silent p.T288T 0.15 TCGA-86-7711-01 1 112524925 112524925 C A KCND3 Nonsense_Mutation p.E142* 0.20 TCGA-86-7711-01 1 113460177 113460177 A G SLC16A1 Missense_Mutation p.L284P 0.17 deleterious(0) probably_damaging(0.996) TCGA-86-7711-01 1 119427585 119427585 T A TBX15 Missense_Mutation p.R421W 0.11 deleterious(0) probably_damaging(0.993) TCGA-86-7711-01 1 151502465 151502465 G T CGN Missense_Mutation p.Q729H 0.25 tolerated(0.09) benign(0.206) TCGA-86-7711-01 1 154171954 154171954 G C C1orf189 Nonsense_Mutation p.Y85* 0.15 TCGA-86-7711-01 1 156131274 156131274 A C SEMA4A Silent p.T316T 0.24 TCGA-86-7711-01 1 157514712 157514712 T A FCRL5 Silent p.A156A 0.30 TCGA-86-7711-01 1 158450450 158450450 C A OR10R2 Nonsense_Mutation p.C261* 0.22 TCGA-86-7711-01 1 158624504 158624504 C G SPTA1 Missense_Mutation p.G978A 0.12 tolerated(0.15) benign(0.078) TCGA-86-7711-01 1 160141528 160141528 G T ATP1A4 Missense_Mutation p.C612F 0.27 deleterious(0) probably_damaging(1) TCGA-86-7711-01 1 160783652 160783652 C A LY9 Silent p.P227P 0.17 TCGA-86-7711-01 1 176668263 176668263 A T PAPPA2 Missense_Mutation p.E925V 0.20 deleterious(0) probably_damaging(0.948) TCGA-86-7711-01 1 185270129 185270129 C T IVNS1ABP Silent p.E365E 0.18 TCGA-86-7711-01 1 196309512 196309512 C A KCNT2 Missense_Mutation p.G581V 0.13 tolerated(0.07) probably_damaging(0.93) TCGA-86-7711-01 1 210637922 210637922 C G HHAT Silent p.L311L 0.14 TCGA-86-7711-01 1 237753196 237753196 G A RYR2 Silent p.E1234E 0.11 TCGA-86-7711-01 1 237941998 237941998 A G RYR2 Silent p.A3936A 0.45 TCGA-86-7711-01 1 248309331 248309331 C A OR2M5 Missense_Mutation p.N294K 0.53 deleterious(0) possibly_damaging(0.792) TCGA-86-7711-01 1 248525593 248525593 C A OR2T4 Silent p.L237L 0.48 TCGA-86-7711-01 1 27875156 27875156 C A AHDC1 Silent p.T1157T 0.19 TCGA-86-7711-01 1 38078474 38078474 G T RSPO1 Missense_Mutation p.Q249K 0.18 tolerated(0.65) benign(0.002) TCGA-86-7711-01 1 46654380 46654380 C G POMGNT1 3'UTR 0.20 TCGA-86-7711-01 1 55139467 55139467 C T MROH7 Silent p.L597L 0.14 TCGA-86-7711-01 1 55277503 55277503 G A C1orf177 Missense_Mutation p.G173S 0.12 deleterious(0) probably_damaging(1) TCGA-86-7711-01 1 68962797 68962797 A T DEPDC1 5'UTR 0.25 TCGA-86-7711-01 1 75684425 75684425 T C SLC44A5 Missense_Mutation p.T427A 0.14 tolerated(0.12) possibly_damaging(0.609) TCGA-86-7711-01 1 76384645 76384645 C G ASB17 Missense_Mutation p.E294Q 0.16 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-86-7711-01 1 86947985 86947985 T A CLCA1 Missense_Mutation p.Y219N 0.23 deleterious(0) probably_damaging(0.95) TCGA-86-7711-01 20 20517336 20517336 T A RALGAPA2 Missense_Mutation p.E1126D 0.11 tolerated(0.65) benign(0) TCGA-86-7711-01 20 2384323 2384323 C A TGM6 Missense_Mutation p.A397D 0.16 deleterious(0) probably_damaging(0.955) TCGA-86-7711-01 20 31757049 31757049 T C BPIFA2 Missense_Mutation p.V33A 0.19 deleterious(0.01) possibly_damaging(0.604) TCGA-86-7711-01 20 35467745 35467745 G C SOGA1 Missense_Mutation p.Q263E 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-86-7711-01 20 36874369 36874369 C T KIAA1755 Missense_Mutation p.A55T 0.12 deleterious(0.03) probably_damaging(0.994) TCGA-86-7711-01 20 37168513 37168513 A T RALGAPB Missense_Mutation p.H825L 0.14 deleterious(0) possibly_damaging(0.653) TCGA-86-7711-01 20 37356902 37356902 G T SLC32A1 Missense_Mutation p.A400S 0.22 deleterious(0.03) possibly_damaging(0.823) TCGA-86-7711-01 20 61881323 61881323 G A NKAIN4 Silent p.F52F 0.11 TCGA-86-7711-01 20 62372772 62372772 C G SLC2A4RG Missense_Mutation p.L111V 0.11 deleterious(0) probably_damaging(0.999) TCGA-86-7711-01 20 8782774 8782774 C T PLCB1 Intron 0.09 TCGA-86-7711-01 21 11049542 11049542 C A BAGE2 RNA 0.10 TCGA-86-7711-01 21 46624477 46624477 G T ADARB1 Missense_Mutation p.V565L 0.10 deleterious(0) probably_damaging(0.974) TCGA-86-7711-01 22 17280847 17280847 G C XKR3 Missense_Mutation p.Q135E 0.11 tolerated(0.11) benign(0) TCGA-86-7711-01 22 18844905 18844905 C A BCRP7 RNA 0.09 TCGA-86-7711-01 22 21096549 21096549 C A PI4KA Missense_Mutation p.W1236C 0.17 deleterious(0) probably_damaging(1) TCGA-86-7711-01 22 22764556 22764556 C T IGLV1-40 Nonsense_Mutation p.Q100* 0.15 TCGA-86-7711-01 22 25115410 25115410 C T PIWIL3 3'UTR 0.16 TCGA-86-7711-01 22 32754417 32754417 T A RFPL3 Missense_Mutation p.M120K 0.11 deleterious(0) probably_damaging(0.924) TCGA-86-7711-01 2 110936014 110936015 - C NPHP1 Frame_Shift_Ins p.E106Rfs*5 0.10 TCGA-86-7711-01 2 113343625 113343625 A G CHCHD5 Missense_Mutation p.K26R 0.09 tolerated(0.27) benign(0.002) TCGA-86-7711-01 2 114257791 114257791 G A FOXD4L1 Missense_Mutation p.G320R 0.19 tolerated(0.12) benign(0.033) TCGA-86-7711-01 2 11802178 11802178 G T NTSR2 Silent p.T271T 0.10 TCGA-86-7711-01 2 119727747 119727747 T C MARCO Missense_Mutation p.L86P 0.21 tolerated(0.08) probably_damaging(0.979) TCGA-86-7711-01 2 119915264 119915264 C A C1QL2 Missense_Mutation p.K194N 0.30 deleterious(0) possibly_damaging(0.733) TCGA-86-7711-01 2 160605023 160605023 G A MARCH7 Missense_Mutation p.E408K 0.16 deleterious(0.01) benign(0.297) TCGA-86-7711-01 2 17697905 17697905 G T RAD51AP2 Missense_Mutation p.S593Y 0.12 tolerated(0.87) benign(0.018) TCGA-86-7711-01 2 186671328 186671328 C T FSIP2 Silent p.P5854P 0.21 TCGA-86-7711-01 2 189599237 189599237 G - DIRC1 3'UTR 0.22 TCGA-86-7711-01 2 206872020 206872020 C T INO80D Missense_Mutation p.D636N 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-86-7711-01 2 207171550 207171550 T A ZDBF2 Missense_Mutation p.H766Q 0.33 tolerated(0.89) benign(0) TCGA-86-7711-01 2 219104121 219104121 G C ARPC2 Missense_Mutation p.E155Q 0.10 tolerated(0.7) benign(0.095) TCGA-86-7711-01 2 220418344 220418344 C G OBSL1 Silent p.T1647T 0.14 TCGA-86-7711-01 2 240954203 240954203 C A NDUFA10 Missense_Mutation p.D208Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-86-7711-01 2 3596251 3596251 C A RNASEH1 Missense_Mutation p.D210Y 0.11 deleterious(0.02) possibly_damaging(0.896) TCGA-86-7711-01 2 55873549 55873549 C A PNPT1 Splice_Site p.X558_splice 0.39 TCGA-86-7711-01 2 68692136 68692136 T C FBXO48 Missense_Mutation p.S48G 0.19 tolerated(0.3) benign(0.021) TCGA-86-7711-01 2 71160317 71160317 A T VAX2 Nonsense_Mutation p.K286* 0.23 TCGA-86-7711-01 2 74789538 74789538 G T M1AP Missense_Mutation p.L363M 0.38 tolerated(0.58) possibly_damaging(0.508) TCGA-86-7711-01 2 88857170 88857170 C G EIF2AK3 3'UTR 0.07 TCGA-86-7711-01 2 98736074 98736074 C T VWA3B Silent p.S130S 0.29 TCGA-86-7711-01 3 100995528 100995528 C A IMPG2 Missense_Mutation p.G188V 0.19 deleterious(0.04) benign(0.101) TCGA-86-7711-01 3 121206232 121206232 C T POLQ Missense_Mutation p.R1849Q 0.22 tolerated(0.05) benign(0.256) TCGA-86-7711-01 3 126268894 126268894 C A C3orf22 Silent p.P81P 0.24 TCGA-86-7711-01 3 126386090 126386090 C G NUP210P1 RNA 0.14 TCGA-86-7711-01 3 12858985 12858985 C T CAND2 Nonsense_Mutation p.Q852* 0.13 TCGA-86-7711-01 3 147108850 147108850 G A ZIC4 Missense_Mutation p.S341L 0.23 deleterious(0.01) probably_damaging(0.921) TCGA-86-7711-01 3 184106522 184106522 G T CHRD Missense_Mutation p.R901I 0.18 tolerated(0.06) possibly_damaging(0.878) TCGA-86-7711-01 3 192516720 192516720 G C MB21D2 Missense_Mutation p.Q311E 0.16 tolerated(0.19) possibly_damaging(0.569) TCGA-86-7711-01 3 195517616 195517616 C T MUC4 Missense_Mutation p.E279K 0.10 unknown(0) TCGA-86-7711-01 3 52562286 52562286 C T NT5DC2 Silent p.P228P 0.17 TCGA-86-7711-01 3 62180801 62180801 G C PTPRG Silent p.R428R 0.15 TCGA-86-7711-01 3 93646091 93646091 T C PROS1 Intron 0.19 TCGA-86-7711-01 4 113356346 113356346 C T ALPK1 Missense_Mutation p.T1026M 0.15 deleterious(0) probably_damaging(0.919) TCGA-86-7711-01 4 126373554 126373554 G T FAT4 Nonsense_Mutation p.G3795* 0.17 TCGA-86-7711-01 4 141847164 141847164 G A RNF150 Silent p.C318C 0.12 TCGA-86-7711-01 4 148827870 148827870 T A ARHGAP10 Silent p.A372A 0.13 TCGA-86-7711-01 4 20569165 20569169 CATGC AATG SLIT2 Frame_Shift_Del p.H959Nfs*16 0.13 TCGA-86-7711-01 4 3319634 3319634 C A RGS12 Silent p.I579I 0.11 TCGA-86-7711-01 4 39109252 39109252 A G KLHL5 Missense_Mutation p.N576S 0.17 tolerated(0.19) benign(0.052) TCGA-86-7711-01 4 68700833 68700833 G T TMPRSS11D Missense_Mutation p.T161N 0.11 tolerated(1) benign(0.014) TCGA-86-7711-01 4 7435881 7435881 G T PSAPL1 Silent p.L242L 0.12 TCGA-86-7711-01 4 85731115 85731115 G A WDFY3 Missense_Mutation p.S757L 0.13 tolerated(0.2) benign(0.002) TCGA-86-7711-01 4 89649738 89649738 C A FAM13A Silent p.L1006L 0.14 TCGA-86-7711-01 4 96140247 96140247 G T UNC5C Silent p.T506T 0.12 TCGA-86-7711-01 5 122130962 122130962 C G SNX2 Nonsense_Mutation p.S37* 0.14 TCGA-86-7711-01 5 140075361 140075361 C T HARS2 Silent p.P188P 0.20 TCGA-86-7711-01 5 140503752 140503752 C T PCDHB4 Silent p.C724C 0.18 TCGA-86-7711-01 5 169021158 169021158 A G SPDL1 Missense_Mutation p.K181E 0.07 tolerated(1) benign(0.003) TCGA-86-7711-01 5 169702356 169702356 C A LCP2 Splice_Site p.X85_splice 0.21 TCGA-86-7711-01 5 34925008 34925008 C A BRIX1 Silent p.L240L 0.16 TCGA-86-7711-01 5 35955944 35955944 A - UGT3A1 Frame_Shift_Del p.F366Lfs*10 0.21 TCGA-86-7711-01 5 36035966 36035966 G A UGT3A2 Missense_Mutation p.T469M 0.14 deleterious(0.03) benign(0.017) TCGA-86-7711-01 5 40853995 40853995 C T CARD6 Missense_Mutation p.S854F 0.08 deleterious(0.04) benign(0.048) TCGA-86-7711-01 5 45303826 45303826 G T HCN1 Missense_Mutation p.P498H 0.35 deleterious(0) probably_damaging(0.999) TCGA-86-7711-01 5 59982897 59982897 C A DEPDC1B Missense_Mutation p.R69L 0.25 deleterious(0) probably_damaging(1) TCGA-86-7711-01 5 60240836 60240836 A G ERCC8 5'UTR 0.17 TCGA-86-7711-01 5 66405958 66405958 A G MAST4 Silent p.A463A 0.06 TCGA-86-7711-01 5 79028079 79028079 C G CMYA5 Missense_Mutation p.T1164S 0.13 benign(0.132) TCGA-86-7711-01 6 110301371 110301371 G T GPR6 Silent p.V352V 0.15 TCGA-86-7711-01 6 145021366 145021366 A G UTRN Missense_Mutation p.Y2599C 0.13 tolerated(0.12) possibly_damaging(0.75) TCGA-86-7711-01 6 151936673 151936673 G T CCDC170 Missense_Mutation p.M602I 0.21 tolerated(0.37) benign(0.004) TCGA-86-7711-01 6 152765682 152765682 C G SYNE1 Missense_Mutation p.C1234S 0.13 benign(0.06) TCGA-86-7711-01 6 155116210 155116210 G C SCAF8 Missense_Mutation p.Q181H 0.16 deleterious(0.02) unknown(0) TCGA-86-7711-01 6 161054936 161054936 C T LPA Missense_Mutation p.E362K 0.24 tolerated_low_confidence(0.29) benign(0.434) TCGA-86-7711-01 6 170846342 170846342 G C PSMB1 Missense_Mutation p.Q174E 0.14 deleterious(0.04) possibly_damaging(0.554) TCGA-86-7711-01 6 24582498 24582498 C T KIAA0319 Silent p.K390K 0.14 TCGA-86-7711-01 6 29455123 29455123 G C MAS1L Missense_Mutation p.P186R 0.10 deleterious(0) probably_damaging(1) TCGA-86-7711-01 6 32165125 32165125 C T NOTCH4 Missense_Mutation p.R1668H 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-86-7711-01 6 34826457 34826457 C T UHRF1BP1 Missense_Mutation p.S775L 0.12 tolerated(0.16) possibly_damaging(0.874) TCGA-86-7711-01 6 70071006 70071006 G T BAI3 Missense_Mutation p.V1281L 0.11 tolerated(0.18) possibly_damaging(0.79) TCGA-86-7711-01 6 75892912 75892912 G C COL12A1 Nonsense_Mutation p.S582* 0.16 TCGA-86-7711-01 6 82910358 82910358 A G IBTK Missense_Mutation p.V953A 0.12 tolerated(0.76) benign(0) TCGA-86-7711-01 6 84234033 84234033 G - PRSS35 Frame_Shift_Del p.E292Nfs*15 0.11 TCGA-86-7711-01 6 84627753 84627753 A G CYB5R4 Missense_Mutation p.T159A 0.20 tolerated(0.83) benign(0.001) TCGA-86-7711-01 7 100682186 100682186 C G MUC17 Missense_Mutation p.P2497A 0.16 benign(0) TCGA-86-7711-01 7 106523603 106523603 G T PIK3CG Nonsense_Mutation p.E919* 0.13 TCGA-86-7711-01 7 110603617 110603617 G A IMMP2L Missense_Mutation p.P82S 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-86-7711-01 7 110764581 110764581 C G LRRN3 Missense_Mutation p.P585A 0.08 tolerated(0.05) possibly_damaging(0.462) TCGA-86-7711-01 7 117251762 117251762 G C CFTR Missense_Mutation p.W1089C 0.09 tolerated(0.07) possibly_damaging(0.842) TCGA-86-7711-01 7 121659316 121659316 A G PTPRZ1 Missense_Mutation p.Y1661C 0.21 deleterious(0) probably_damaging(0.981) TCGA-86-7711-01 7 121942156 121942156 C T FEZF1 Silent p.P441P 0.12 TCGA-86-7711-01 7 123594452 123594452 C A SPAM1 Silent p.L276L 0.13 TCGA-86-7711-01 7 1275635 1275635 G A UNCX Silent p.K206K 0.21 TCGA-86-7711-01 7 128802692 128802692 G A TSPAN33 Missense_Mutation p.A103T 0.17 deleterious(0.01) benign(0.067) TCGA-86-7711-01 7 142144041 142144041 C A TRBV6-7 Missense_Mutation p.W15L 0.05 tolerated(0.41) benign(0.143) TCGA-86-7711-01 7 143657989 143657989 C A OR2F1 Missense_Mutation p.S309Y 0.17 tolerated(0.06) benign(0.013) TCGA-86-7711-01 7 149510833 149510833 G T SSPO RNA 0.28 TCGA-86-7711-01 7 151962215 151962215 C A KMT2C Missense_Mutation p.Q364H 0.07 probably_damaging(0.998) TCGA-86-7711-01 7 156762350 156762350 G A NOM1 Missense_Mutation p.D846N 0.20 tolerated(0.07) benign(0.191) TCGA-86-7711-01 7 25208070 25208070 C A C7orf31 Missense_Mutation p.R50M 0.18 deleterious(0) probably_damaging(0.912) TCGA-86-7711-01 7 50660591 50660591 C A GRB10 3'UTR 0.28 TCGA-86-7711-01 7 5399057 5399057 T C TNRC18 Missense_Mutation p.H1602R 0.14 benign(0.256) TCGA-86-7711-01 7 73097481 73097481 G C DNAJC30 Missense_Mutation p.F91L 0.14 deleterious(0) probably_damaging(0.999) TCGA-86-7711-01 7 81335605 81335605 G C HGF Silent p.A585A 0.20 TCGA-86-7711-01 7 88389326 88389326 C G ZNF804B Silent p.L12L 0.13 TCGA-86-7711-01 8 113276001 113276001 C G CSMD3 Missense_Mutation p.R3243S 0.10 tolerated(0.06) benign(0.105) TCGA-86-7711-01 8 113316984 113316984 A G CSMD3 Silent p.T2744T 0.15 TCGA-86-7711-01 8 120809335 120809335 A T TAF2 Missense_Mutation p.L329H 0.10 deleterious(0) probably_damaging(0.999) TCGA-86-7711-01 8 124824840 124824840 G A FAM91A1 Missense_Mutation p.V805I 0.16 tolerated(0.33) benign(0.192) TCGA-86-7711-01 8 124989784 124989784 A - FER1L6 Frame_Shift_Del p.D333Afs*2 0.12 TCGA-86-7711-01 8 125551356 125551356 C T TATDN1 5'Flank 0.11 TCGA-86-7711-01 8 12943297 12943297 A G DLC1 3'UTR 0.08 TCGA-86-7711-01 8 12958070 12958070 A T DLC1 Silent p.S592S 0.18 TCGA-86-7711-01 8 145698021 145698021 C G KIFC2 Missense_Mutation p.S598C 0.20 deleterious(0) probably_damaging(1) TCGA-86-7711-01 8 24199159 24199159 G C ADAM28 Missense_Mutation p.L573F 0.17 tolerated(0.16) probably_damaging(0.932) TCGA-86-7711-01 8 25191656 25191677 TAATCCTGTACTTGAAACCTAC - DOCK5 Frame_Shift_Del p.F712Lfs*13 0.20 TCGA-86-7711-01 8 28575146 28575146 G A EXTL3 Missense_Mutation p.D524N 0.19 tolerated(0.16) benign(0.007) TCGA-86-7711-01 8 77767729 77767729 G T ZFHX4 Nonsense_Mutation p.E2858* 0.09 TCGA-86-7711-01 8 9605665 9605665 T A TNKS Missense_Mutation p.H925Q 0.22 tolerated(0.12) probably_damaging(0.978) TCGA-86-7711-01 9 114128858 114128858 G C KIAA0368 Silent p.L1899L 0.18 TCGA-86-7711-01 9 127619860 127619860 G C WDR38 Missense_Mutation p.R299T 0.19 tolerated(0.17) benign(0.171) TCGA-86-7711-01 9 130536702 130536702 G C SH2D3C Missense_Mutation p.R28G 0.21 deleterious(0.02) probably_damaging(0.997) TCGA-86-7711-01 9 139393423 139393423 G A NOTCH1 Silent p.A2036A 0.20 TCGA-86-7711-01 9 19290748 19290748 C T DENND4C Silent p.L225L 0.12 TCGA-86-7711-01 9 84530653 84530653 C A SPATA31D5P RNA 0.22 TCGA-86-7711-01 9 8517968 8517968 G C PTPRD Missense_Mutation p.Q475E 0.15 tolerated(1) benign(0.004) TCGA-86-7711-01 X 13778743 13778743 G T OFD1 Missense_Mutation p.A722S 0.25 tolerated(0.16) benign(0.284) TCGA-86-7711-01 X 21675702 21675703 CG - KLHL34 Frame_Shift_Del p.V69Dfs*44 0.33 TCGA-86-7711-01 X 34962537 34962537 G C FAM47B Missense_Mutation p.R530T 0.23 deleterious(0.02) benign(0.359) TCGA-86-7711-01 X 34962538 34962538 G T FAM47B Missense_Mutation p.R530S 0.24 deleterious(0.01) benign(0.121) TCGA-86-7711-01 X 54952076 54952076 C T TRO Missense_Mutation p.L513F 0.18 deleterious(0) unknown(0) TCGA-86-7711-01 X 57162258 57162258 G T SPIN2A Missense_Mutation p.S258Y 0.22 deleterious(0) possibly_damaging(0.836) TCGA-86-7713-01 10 100481488 100481488 C A HPSE2 Silent p.R294R 0.39 TCGA-86-7713-01 10 103530295 103530295 C T FGF8 Missense_Mutation p.E176K 0.34 tolerated(0.18) benign(0.015) TCGA-86-7713-01 10 118138908 118138908 G T CCDC172 3'UTR 0.32 TCGA-86-7713-01 10 123279634 123279634 G A FGFR2 Silent p.A266A 0.11 TCGA-86-7713-01 10 124338238 124338238 T G DMBT1 Missense_Mutation p.S214R 0.35 tolerated(0.6) benign(0.023) TCGA-86-7713-01 10 129902508 129902508 G T MKI67 Silent p.I2532I 0.39 TCGA-86-7713-01 10 27538535 27538535 G T RP11-85G18.6 Intron 0.40 TCGA-86-7713-01 10 5790473 5790473 G T FAM208B Missense_Mutation p.G1697C 0.38 tolerated(0.08) possibly_damaging(0.598) TCGA-86-7713-01 10 72489080 72489080 G C ADAMTS14 Missense_Mutation p.G301R 0.33 deleterious(0) probably_damaging(1) TCGA-86-7713-01 10 73082704 73082704 C T SLC29A3 Silent p.L65L 0.06 TCGA-86-7713-01 10 73587857 73587857 C G PSAP Missense_Mutation p.V212L 0.35 tolerated(0.2) benign(0.026) TCGA-86-7713-01 10 81372125 81372125 G T SFTPA1 Missense_Mutation p.G92V 0.35 deleterious(0) probably_damaging(1) TCGA-86-7713-01 10 98799774 98799774 G - SLIT1 Frame_Shift_Del p.K757Rfs*35 0.25 TCGA-86-7713-01 10 99664469 99664469 C A CRTAC1 Missense_Mutation p.R318L 0.34 deleterious(0.01) probably_damaging(0.976) TCGA-86-7713-01 11 1025300 1025300 C G MUC6 Missense_Mutation p.G956A 0.14 unknown(0) TCGA-86-7713-01 11 10778300 10778300 A C CTR9 Missense_Mutation p.K169N 0.26 deleterious(0) possibly_damaging(0.462) TCGA-86-7713-01 11 16010775 16010775 T G SOX6 Intron 0.50 TCGA-86-7713-01 11 17111203 17111203 T G PIK3C2A 3'UTR 0.45 TCGA-86-7713-01 11 31823152 31823152 C A PAX6 Missense_Mutation p.R119I 0.22 deleterious(0) probably_damaging(0.996) TCGA-86-7713-01 11 40136650 40136650 G T LRRC4C Missense_Mutation p.A398E 0.38 deleterious(0) benign(0.119) TCGA-86-7713-01 11 40137855 40137855 T A LRRC4C 5'UTR 0.42 TCGA-86-7713-01 11 47201066 47201066 T A PACSIN3 Missense_Mutation p.E225D 0.31 deleterious(0.03) possibly_damaging(0.851) TCGA-86-7713-01 11 55340174 55340174 T A OR4C16 Missense_Mutation p.Y191N 0.46 deleterious(0) probably_damaging(0.969) TCGA-86-7713-01 11 6942999 6942999 C T OR2D3 Missense_Mutation p.T256I 0.10 deleterious(0.01) probably_damaging(0.943) TCGA-86-7713-01 11 77054934 77054934 C A PAK1 Nonsense_Mutation p.E310* 0.19 TCGA-86-7713-01 12 10962433 10962433 A G TAS2R9 Missense_Mutation p.L81P 0.50 tolerated(0.09) possibly_damaging(0.856) TCGA-86-7713-01 12 124414242 124414242 C T DNAH10 Missense_Mutation p.T4065M 0.15 benign(0.38) TCGA-86-7713-01 12 13140126 13140126 C T HEBP1 Missense_Mutation p.V120I 0.12 tolerated(1) benign(0.003) TCGA-86-7713-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.34 deleterious(0.04) probably_damaging(0.993) TCGA-86-7713-01 12 25706068 25706068 A T IFLTD1 5'UTR 0.22 TCGA-86-7713-01 12 45725191 45725191 A C ANO6 Silent p.T109T 0.33 TCGA-86-7713-01 12 48131300 48131300 T C RAPGEF3 3'UTR 0.56 TCGA-86-7713-01 12 53427616 53427616 C G EIF4B Missense_Mutation p.L336V 0.23 deleterious(0.02) probably_damaging(0.992) TCGA-86-7713-01 12 64041052 64041052 G C DPY19L2 Missense_Mutation p.P228A 0.28 tolerated(0.13) benign(0.216) TCGA-86-7713-01 12 71029742 71029742 A G PTPRB Missense_Mutation p.W54R 0.35 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-86-7713-01 12 75601467 75601467 G C KCNC2 Silent p.G99G 0.45 TCGA-86-7713-01 13 26974666 26974666 A T CDK8 Missense_Mutation p.E337V 0.59 deleterious(0.02) possibly_damaging(0.769) TCGA-86-7713-01 13 61103023 61103023 A G TDRD3 Missense_Mutation p.N555S 0.63 tolerated(0.52) benign(0.001) TCGA-86-7713-01 13 84454777 84454777 G A SLITRK1 Missense_Mutation p.P289L 0.44 tolerated(0.09) benign(0.017) TCGA-86-7713-01 13 84454778 84454778 G T SLITRK1 Missense_Mutation p.P289T 0.41 tolerated(0.24) benign(0.014) TCGA-86-7713-01 14 103988639 103988639 C T CKB Silent p.P64P 0.28 TCGA-86-7713-01 14 106207876 106207876 G T IGHG1 Silent p.S309S 0.40 TCGA-86-7713-01 14 22363102 22363102 G T TRAV8-4 Missense_Mutation p.G78V 0.24 deleterious(0) possibly_damaging(0.719) TCGA-86-7713-01 14 24738879 24738879 C T RABGGTA Missense_Mutation p.R150Q 0.34 deleterious(0) probably_damaging(0.989) TCGA-86-7713-01 14 33291383 33291383 G C AKAP6 Missense_Mutation p.G1455A 0.37 tolerated_low_confidence(0.24) possibly_damaging(0.459) TCGA-86-7713-01 14 47566205 47566205 G A MDGA2 Silent p.S349S 0.33 TCGA-86-7713-01 14 60194383 60194383 G C RTN1 Missense_Mutation p.P340R 0.39 deleterious(0.02) benign(0.059) TCGA-86-7713-01 14 60194384 60194384 G T RTN1 Missense_Mutation p.P340T 0.35 deleterious(0.02) possibly_damaging(0.545) TCGA-86-7713-01 14 68274527 68274527 C A ZFYVE26 Missense_Mutation p.W158C 0.52 deleterious(0.04) probably_damaging(0.983) TCGA-86-7713-01 14 86088584 86088584 G C FLRT2 Silent p.L242L 0.42 TCGA-86-7713-01 14 91671070 91671070 G A C14orf159 Missense_Mutation p.E489K 0.31 tolerated(0.06) possibly_damaging(0.46) TCGA-86-7713-01 15 32929215 32929215 C G ARHGAP11A Missense_Mutation p.N747K 0.37 tolerated(0.24) possibly_damaging(0.575) TCGA-86-7713-01 15 48551450 48551450 A T SLC12A1 Missense_Mutation p.D699V 0.27 deleterious(0) benign(0.421) TCGA-86-7713-01 15 65983463 65983463 C A DENND4A Missense_Mutation p.D1156Y 0.28 deleterious(0) possibly_damaging(0.535) TCGA-86-7713-01 15 80847406 80847406 G C ARNT2 Missense_Mutation p.D364H 0.24 deleterious(0) possibly_damaging(0.588) TCGA-86-7713-01 15 85341834 85341834 C - ZNF592 Frame_Shift_Del p.R919Efs*60 0.27 TCGA-86-7713-01 15 91437239 91437239 C T FES Silent p.S759S 0.37 TCGA-86-7713-01 16 70972618 70972618 A T HYDIN Silent p.R2298R 0.42 TCGA-86-7713-01 16 70975590 70975590 G - HYDIN Frame_Shift_Del p.Q2268Rfs*6 0.10 TCGA-86-7713-01 16 7383079 7383079 G T RBFOX1 Missense_Mutation p.G26V 0.41 tolerated(0.45) benign(0.079) TCGA-86-7713-01 16 88967957 88967957 C T CBFA2T3 Missense_Mutation p.A87T 0.41 tolerated_low_confidence(0.45) benign(0.003) TCGA-86-7713-01 16 89858414 89858414 C A FANCA Missense_Mutation p.Q382H 0.37 tolerated(1) benign(0.216) TCGA-86-7713-01 17 10212750 10212750 G A MYH13 Missense_Mutation p.S1657F 0.25 tolerated(0.05) probably_damaging(0.998) TCGA-86-7713-01 17 10363356 10363356 G A MYH4 Silent p.V443V 0.32 TCGA-86-7713-01 17 39579093 39579093 G T KRT37 Missense_Mutation p.D223E 0.53 deleterious(0) probably_damaging(0.995) TCGA-86-7713-01 17 42636781 42636781 G C FZD2 3'UTR 0.27 TCGA-86-7713-01 17 44172067 44172067 C - KANSL1 Frame_Shift_Del p.R431Dfs*49 0.22 TCGA-86-7713-01 17 57288786 57288786 G A SMG8 Silent p.V458V 0.43 TCGA-86-7713-01 17 61769133 61769133 C A MAP3K3 Missense_Mutation p.T493K 0.20 deleterious(0) possibly_damaging(0.537) TCGA-86-7713-01 17 73242605 73242605 C T GGA3 Silent p.A62A 0.18 TCGA-86-7713-01 18 22804959 22804959 T C ZNF521 Missense_Mutation p.T975A 0.35 tolerated(0.41) probably_damaging(0.993) TCGA-86-7713-01 18 31226268 31226268 G T ASXL3 Missense_Mutation p.L102F 0.11 possibly_damaging(0.613) TCGA-86-7713-01 18 48581339 48581339 C T SMAD4 Missense_Mutation p.P215S 0.56 tolerated(0.28) benign(0.001) TCGA-86-7713-01 19 11594670 11594670 C G ZNF653 Missense_Mutation p.E559Q 0.38 deleterious(0) probably_damaging(1) TCGA-86-7713-01 19 1220715 1220715 C T STK11 Missense_Mutation p.L245F 0.63 deleterious(0.02) probably_damaging(0.999) TCGA-86-7713-01 19 19824913 19824913 C A ZNF14 Missense_Mutation p.G60W 0.53 tolerated(0.09) probably_damaging(0.998) TCGA-86-7713-01 19 22018896 22018896 G T ZNF43 5'UTR 0.25 TCGA-86-7713-01 19 41019317 41019317 G T SPTBN4 Missense_Mutation p.R874L 0.50 deleterious(0.04) benign(0.121) TCGA-86-7713-01 19 51630302 51630302 G T SIGLEC9 Missense_Mutation p.G255V 0.23 tolerated(0.05) possibly_damaging(0.572) TCGA-86-7713-01 19 52146834 52146834 A C SIGLEC14 Silent p.A368A 0.35 TCGA-86-7713-01 19 53459279 53459279 C A ZNF816 Splice_Site p.X21_splice 0.33 TCGA-86-7713-01 19 53459280 53459280 C A ZNF816 Missense_Mutation p.Q21H 0.32 deleterious(0) probably_damaging(0.976) TCGA-86-7713-01 19 53770108 53770108 C A VN1R4 Missense_Mutation p.A271S 0.36 tolerated(0.21) benign(0.089) TCGA-86-7713-01 19 54080642 54080653 TGGGAAGGCTTT - ZNF331 In_Frame_Del p.G277_F280del 0.32 TCGA-86-7713-01 19 54245780 54245780 C A MIR520H RNA 0.33 TCGA-86-7713-01 19 55175722 55175722 G A LILRB4 Silent p.R147R 0.32 TCGA-86-7713-01 19 55453058 55453058 A T NLRP7 Missense_Mutation p.W8R 0.43 deleterious(0) possibly_damaging(0.609) TCGA-86-7713-01 19 55543711 55543711 C A GP6 Nonsense_Mutation p.E41* 0.55 TCGA-86-7713-01 19 6420440 6420440 C A KHSRP Silent p.V156V 0.54 TCGA-86-7713-01 19 6664944 6664944 A G TNFSF14 Missense_Mutation p.M239T 0.57 deleterious(0) probably_damaging(1) TCGA-86-7713-01 19 8807797 8807797 C A ACTL9 3'UTR 0.43 TCGA-86-7713-01 19 9582050 9582050 C T ZNF560 Nonsense_Mutation p.W81* 0.61 TCGA-86-7713-01 1 114189171 114189171 A G MAGI3 Missense_Mutation p.M688V 0.41 tolerated(0.1) benign(0.097) TCGA-86-7713-01 1 12058906 12058906 G A MFN2 Missense_Mutation p.A227T 0.47 deleterious(0.01) benign(0.269) TCGA-86-7713-01 1 152280910 152280910 C T FLG Missense_Mutation p.G2151E 0.60 probably_damaging(0.931) TCGA-86-7713-01 1 155271116 155271116 G T PKLR Missense_Mutation p.A24E 0.64 deleterious_low_confidence(0.03) benign(0.092) TCGA-86-7713-01 1 158653173 158653173 G A SPTA1 Silent p.H126H 0.61 TCGA-86-7713-01 1 160061724 160061724 C T IGSF8 Silent p.L577L 0.53 TCGA-86-7713-01 1 160171074 160171074 C T CASQ1 Silent p.L367L 0.60 TCGA-86-7713-01 1 160969998 160969998 G A F11R Missense_Mutation p.P177S 0.29 deleterious(0.01) possibly_damaging(0.516) TCGA-86-7713-01 1 168032861 168032861 G T DCAF6 Missense_Mutation p.R768L 0.36 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-86-7713-01 1 170015993 170015993 C A KIFAP3 Missense_Mutation p.S60I 0.60 deleterious(0) possibly_damaging(0.789) TCGA-86-7713-01 1 171621320 171621320 G T MYOC Missense_Mutation p.N144K 0.18 tolerated(0.35) benign(0.146) TCGA-86-7713-01 1 176664879 176664879 C A PAPPA2 Nonsense_Mutation p.S877* 0.63 TCGA-86-7713-01 1 197101446 197101446 T C ASPM Missense_Mutation p.Y819C 0.34 deleterious(0) probably_damaging(0.928) TCGA-86-7713-01 1 202733256 202733256 T C KDM5B Missense_Mutation p.I243M 0.15 tolerated(0.11) benign(0.007) TCGA-86-7713-01 1 216062172 216062172 C A USH2A Nonsense_Mutation p.G2607* 0.62 TCGA-86-7713-01 1 226074602 226074602 G A LEFTY1 Missense_Mutation p.P309L 0.10 deleterious(0.02) probably_damaging(0.991) TCGA-86-7713-01 1 233388166 233388166 C A PCNXL2 Missense_Mutation p.G688W 0.16 deleterious(0) probably_damaging(0.996) TCGA-86-7713-01 1 248308515 248308515 C A OR2M5 Silent p.P22P 0.60 TCGA-86-7713-01 1 52941190 52941190 T A ZCCHC11 Missense_Mutation p.R681W 0.33 deleterious(0) probably_damaging(0.999) TCGA-86-7713-01 1 75684273 75684273 G T SLC44A5 Nonsense_Mutation p.C477* 0.13 TCGA-86-7713-01 1 94014886 94014886 C T FNBP1L Silent p.P518P 0.30 TCGA-86-7713-01 20 1617082 1617082 G T SIRPG Missense_Mutation p.T167N 0.34 deleterious(0) possibly_damaging(0.492) TCGA-86-7713-01 20 25667148 25667148 C T ZNF337 5'UTR 0.33 TCGA-86-7713-01 20 43837137 43837137 G C SEMG1 Missense_Mutation p.G400A 0.49 tolerated(0.24) possibly_damaging(0.506) TCGA-86-7713-01 21 31874354 31874354 C A KRTAP19-5 Missense_Mutation p.D19Y 0.39 deleterious_low_confidence(0.04) unknown(0) TCGA-86-7713-01 21 43491428 43491428 G A UMODL1 Translation_Start_Site p.M1? 0.35 deleterious(0) benign(0.043) TCGA-86-7713-01 22 41222501 41222501 T C ST13 3'UTR 0.36 TCGA-86-7713-01 22 44602388 44602388 C T PARVG 3'UTR 0.31 TCGA-86-7713-01 22 45309877 45309877 G T PHF21B Nonsense_Mutation p.S219* 0.44 TCGA-86-7713-01 22 50832508 50832508 G A PPP6R2 Silent p.L57L 0.16 TCGA-86-7713-01 2 10186425 10186425 G A KLF11 Missense_Mutation p.G64D 0.39 tolerated(0.09) possibly_damaging(0.903) TCGA-86-7713-01 2 105897176 105897176 C A TGFBRAP1 Missense_Mutation p.G376C 0.35 deleterious(0) probably_damaging(0.99) TCGA-86-7713-01 2 155711687 155711687 C T KCNJ3 Silent p.T456T 0.43 TCGA-86-7713-01 2 211503873 211503873 G T CPS1 Splice_Site p.X950_splice 0.34 TCGA-86-7713-01 2 31602826 31602826 G A XDH Silent p.V383V 0.41 TCGA-86-7713-01 2 39088534 39088534 C A DHX57 Missense_Mutation p.D340Y 0.31 deleterious(0.01) possibly_damaging(0.898) TCGA-86-7713-01 2 62974575 62974575 G A EHBP1 Silent p.R50R 0.17 TCGA-86-7713-01 2 63101479 63101479 A T EHBP1 Splice_Site p.X368_splice 0.41 TCGA-86-7713-01 2 79255038 79255038 G - REG3G Frame_Shift_Del p.S148Afs*9 0.25 TCGA-86-7713-01 2 79255050 79255050 A G REG3G Missense_Mutation p.R151G 0.45 tolerated(0.18) benign(0.039) TCGA-86-7713-01 2 90153755 90153755 C A IGKV3D-15 Missense_Mutation p.P4Q 0.26 tolerated(0.48) benign(0.3) TCGA-86-7713-01 2 99012950 99012950 G T CNGA3 Silent p.R439R 0.32 TCGA-86-7713-01 3 142123826 142123826 C - XRN1 Frame_Shift_Del p.W602Cfs*21 0.45 TCGA-86-7713-01 3 178785396 178785396 C T ZMAT3 Missense_Mutation p.G49R 0.58 tolerated(0.82) benign(0.027) TCGA-86-7713-01 3 27442272 27442272 T A SLC4A7 Nonsense_Mutation p.R795* 0.53 TCGA-86-7713-01 3 42915744 42915744 A - CYP8B1 3'UTR 0.50 TCGA-86-7713-01 3 47887703 47887703 G A DHX30 Missense_Mutation p.D381N 0.17 tolerated(0.46) benign(0.057) TCGA-86-7713-01 3 47887817 47887817 G C DHX30 Missense_Mutation p.E419Q 0.21 tolerated(0.29) benign(0.013) TCGA-86-7713-01 3 47887871 47887871 G A DHX30 Missense_Mutation p.D437N 0.18 tolerated(0.14) benign(0.085) TCGA-86-7713-01 3 58140628 58140628 G T FLNB Missense_Mutation p.G2280C 0.40 deleterious(0.02) probably_damaging(1) TCGA-86-7713-01 3 71027060 71027060 C A FOXP1 Missense_Mutation p.V425F 0.23 deleterious(0.03) probably_damaging(0.92) TCGA-86-7713-01 3 78685076 78685076 C A ROBO1 Missense_Mutation p.A1074S 0.21 tolerated(0.09) probably_damaging(0.984) TCGA-86-7713-01 4 1244578 1244578 A G CTBP1 5'Flank 0.42 TCGA-86-7713-01 4 166935588 166935588 G T TLL1 Missense_Mutation p.R306S 0.19 deleterious(0) possibly_damaging(0.817) TCGA-86-7713-01 4 40245368 40245368 G T RHOH Missense_Mutation p.R121L 0.22 deleterious(0) probably_damaging(0.995) TCGA-86-7713-01 4 65188467 65188467 T A TECRL Silent p.A125A 0.19 TCGA-86-7713-01 4 74735447 74735447 C T CXCL1 Silent p.P54P 0.32 TCGA-86-7713-01 4 90756779 90756779 C T SNCA Missense_Mutation p.G14R 0.26 deleterious(0) probably_damaging(1) TCGA-86-7713-01 5 132232907 132232907 C A AFF4 Missense_Mutation p.W472L 0.21 deleterious(0) possibly_damaging(0.621) TCGA-86-7713-01 5 13864539 13864539 C A DNAH5 Missense_Mutation p.E1521D 0.44 benign(0.005) TCGA-86-7713-01 5 140237891 140237891 G A PCDHA10 Missense_Mutation p.R753Q 0.54 tolerated_low_confidence(0.12) benign(0.016) TCGA-86-7713-01 5 140574220 140574220 G T PCDHB10 Missense_Mutation p.V699L 0.24 deleterious_low_confidence(0) possibly_damaging(0.625) TCGA-86-7713-01 5 140755487 140755487 G T PCDHGA6 Nonsense_Mutation p.E613* 0.44 TCGA-86-7713-01 5 140798727 140798727 C T PCDHGB7 Missense_Mutation p.S434F 0.10 deleterious(0) possibly_damaging(0.883) TCGA-86-7713-01 5 150911504 150911504 A C FAT2 Missense_Mutation p.L3152R 0.22 probably_damaging(0.999) TCGA-86-7713-01 5 157078524 157078524 G T SOX30 Missense_Mutation p.A188E 0.58 tolerated_low_confidence(0.13) benign(0.005) TCGA-86-7713-01 5 161116287 161116287 G T GABRA6 Missense_Mutation p.M158I 0.48 deleterious(0) probably_damaging(0.985) TCGA-86-7713-01 5 173036425 173036425 C A BOD1 Missense_Mutation p.L125F 0.16 deleterious(0.03) probably_damaging(0.929) TCGA-86-7713-01 5 176056582 176056582 C A SNCB Missense_Mutation p.G25V 0.35 deleterious(0) probably_damaging(0.998) TCGA-86-7713-01 5 176309050 176309050 A T HK3 Missense_Mutation p.I711N 0.51 deleterious(0) probably_damaging(0.995) TCGA-86-7713-01 5 178634557 178634557 C A ADAMTS2 Missense_Mutation p.G283V 0.42 deleterious(0) probably_damaging(0.973) TCGA-86-7713-01 5 23522875 23522875 C A PRDM9 Missense_Mutation p.Q255K 0.38 tolerated(0.12) benign(0.006) TCGA-86-7713-01 6 117248302 117248302 A C RFX6 Silent p.P666P 0.59 TCGA-86-7713-01 6 139591688 139591688 C A TXLNB Missense_Mutation p.D198Y 0.60 deleterious(0.01) probably_damaging(0.998) TCGA-86-7713-01 6 170169675 170169675 C G ERMARD Missense_Mutation p.R367G 0.67 deleterious(0) probably_damaging(0.999) TCGA-86-7713-01 6 26032019 26032019 C T HIST1H3B Silent p.V90V 0.23 TCGA-86-7713-01 6 52993452 52993452 T A GCM1 Missense_Mutation p.Y288F 0.36 tolerated(0.62) benign(0.002) TCGA-86-7713-01 6 57512612 57512612 C A PRIM2 3'UTR 0.16 TCGA-86-7713-01 6 80715587 80715587 A G TTK Silent p.R9R 0.52 TCGA-86-7713-01 7 100676675 100676675 G T MUC17 Missense_Mutation p.V660L 0.16 benign(0.35) TCGA-86-7713-01 7 1008881 1008881 C A COX19 3'UTR 0.40 TCGA-86-7713-01 7 107615715 107615715 A G LAMB1 Missense_Mutation p.Y445H 0.39 deleterious(0.03) possibly_damaging(0.501) TCGA-86-7713-01 7 120991230 120991230 C A FAM3C Silent p.G187G 0.30 TCGA-86-7713-01 7 120991242 120991242 G C FAM3C Silent p.V183V 0.27 TCGA-86-7713-01 7 126746607 126746607 C G GRM8 Missense_Mutation p.E224Q 0.43 deleterious(0) probably_damaging(0.998) TCGA-86-7713-01 7 150217516 150217516 G A GIMAP7 Missense_Mutation p.G152S 0.37 tolerated(0.25) benign(0.001) TCGA-86-7713-01 7 150269373 150269373 G T GIMAP4 Missense_Mutation p.R72L 0.32 tolerated(0.24) benign(0.171) TCGA-86-7713-01 7 27238817 27238817 C A HOXA13 Nonsense_Mutation p.E294* 0.33 TCGA-86-7713-01 7 30793497 30793497 C A INMT Missense_Mutation p.P102Q 0.37 deleterious(0) probably_damaging(0.984) TCGA-86-7713-01 7 44283039 44283039 G T CAMK2B Missense_Mutation p.Q168K 0.24 deleterious_low_confidence(0) possibly_damaging(0.663) TCGA-86-7713-01 7 45010484 45010484 T A MYO1G Nonsense_Mutation p.K341* 0.30 TCGA-86-7713-01 7 97488526 97488526 T G ASNS Silent p.P224P 0.15 TCGA-86-7713-01 8 67974210 67974210 T C COPS5 Missense_Mutation p.M8V 0.21 tolerated(0.74) benign(0.001) TCGA-86-7713-01 8 86035739 86035739 A C LRRCC1 Missense_Mutation p.K341T 0.12 deleterious(0) probably_damaging(0.946) TCGA-86-7713-01 8 97157010 97157010 G A GDF6 Silent p.C383C 0.22 TCGA-86-7713-01 9 119187758 119187758 A G ASTN2 3'UTR 0.50 TCGA-86-7713-01 9 12695518 12695518 G T TYRP1 Missense_Mutation p.R130M 0.64 deleterious(0) probably_damaging(0.999) TCGA-86-7713-01 9 134738450 134738450 C A MED27 Missense_Mutation p.M267I 0.74 tolerated(0.05) benign(0.092) TCGA-86-7713-01 9 135553983 135553983 G A GTF3C4 Missense_Mutation p.R326Q 0.73 tolerated(0.06) probably_damaging(0.978) TCGA-86-7713-01 9 34972519 34972519 C - KIAA1045 Frame_Shift_Del p.H186Tfs*33 0.44 TCGA-86-7713-01 9 78965780 78965780 G T PCSK5 Missense_Mutation p.S1641I 0.23 deleterious(0) benign(0.019) TCGA-86-7713-01 X 34962130 34962130 G T FAM47B Missense_Mutation p.M394I 0.83 tolerated(0.21) benign(0.011) TCGA-86-7713-01 X 72434052 72434052 C A NAP1L2 Missense_Mutation p.G93C 0.69 deleterious(0) probably_damaging(1) TCGA-86-7714-01 10 119043640 119043640 C T PDZD8 Silent p.Q868Q 0.29 TCGA-86-7714-01 10 52601733 52601733 A T A1CF Missense_Mutation p.M93K 0.36 deleterious(0) benign(0.417) TCGA-86-7714-01 10 78771737 78771737 C A KCNMA1 Missense_Mutation p.G694C 0.21 deleterious(0.03) possibly_damaging(0.769) TCGA-86-7714-01 10 95549922 95549922 A T LGI1 Silent p.T166T 0.29 TCGA-86-7714-01 10 97442454 97442454 T A TCTN3 Missense_Mutation p.Q469L 0.31 deleterious(0) possibly_damaging(0.691) TCGA-86-7714-01 11 55797982 55797982 G T OR5AS1 Missense_Mutation p.V30L 0.30 tolerated(0.99) benign(0.007) TCGA-86-7714-01 11 61183946 61183946 T A CPSF7 Missense_Mutation p.D242V 0.33 deleterious(0.05) probably_damaging(0.996) TCGA-86-7714-01 11 61644995 61644995 G A FADS3 Silent p.C291C 0.26 TCGA-86-7714-01 11 64699334 64699334 T - PPP2R5B Frame_Shift_Del p.F371Sfs*17 0.22 TCGA-86-7714-01 11 65397824 65397824 A T PCNXL3 Missense_Mutation p.T1407S 0.28 deleterious(0) probably_damaging(0.978) TCGA-86-7714-01 11 78380978 78380978 C T TENM4 Missense_Mutation p.V2138I 0.23 tolerated(0.08) possibly_damaging(0.776) TCGA-86-7714-01 13 108862925 108862925 G A LIG4 Missense_Mutation p.P231L 0.25 deleterious(0) benign(0.334) TCGA-86-7714-01 13 32527200 32527200 A T EEF1DP3 RNA 0.27 TCGA-86-7714-01 13 35782950 35782950 C A NBEA Missense_Mutation p.A1827D 0.39 tolerated(0.06) possibly_damaging(0.601) TCGA-86-7714-01 13 70681634 70681634 G T KLHL1 Missense_Mutation p.S66R 0.29 tolerated_low_confidence(0.61) benign(0) TCGA-86-7714-01 14 105421945 105421945 G A AHNAK2 Missense_Mutation p.T114M 0.40 benign(0.057) TCGA-86-7714-01 14 24029509 24029509 T C AP1G2 Silent p.S704S 0.11 TCGA-86-7714-01 14 57752960 57752960 A G AP5M1 Missense_Mutation p.D438G 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-86-7714-01 14 75248810 75248810 G T YLPM1 Silent p.P688P 0.31 TCGA-86-7714-01 14 92922777 92922777 T A SLC24A4 Silent p.G360G 0.32 TCGA-86-7714-01 15 28090122 28090122 G A OCA2 Silent p.S805S 0.26 TCGA-86-7714-01 15 50215688 50215688 C T ATP8B4 Missense_Mutation p.R549Q 0.39 deleterious(0.03) benign(0.036) TCGA-86-7714-01 15 83331888 83331888 C G AP3B2 Silent p.L846L 0.16 TCGA-86-7714-01 16 85682236 85682236 G T GSE1 Missense_Mutation p.R102L 0.29 deleterious(0) unknown(0) TCGA-86-7714-01 17 10543512 10543512 C A MYH3 Missense_Mutation p.W828L 0.29 deleterious(0) probably_damaging(0.993) TCGA-86-7714-01 17 4510835 4510835 C T SMTNL2 3'UTR 0.31 TCGA-86-7714-01 17 48625107 48625107 G A SPATA20 Nonsense_Mutation p.W35* 0.23 TCGA-86-7714-01 17 61391778 61391778 A G TANC2 Missense_Mutation p.I323V 0.26 tolerated(0.06) benign(0.074) TCGA-86-7714-01 17 7194462 7194462 T A YBX2 Missense_Mutation p.S137C 0.30 deleterious(0) possibly_damaging(0.902) TCGA-86-7714-01 17 72842339 72842344 TTGCCT - GRIN2C In_Frame_Del p.G738_K739del 0.29 TCGA-86-7714-01 17 8219099 8219099 T G ARHGEF15 Missense_Mutation p.V483G 0.31 deleterious(0) probably_damaging(0.993) TCGA-86-7714-01 19 23543480 23543480 C T ZNF91 Silent p.E767E 0.44 TCGA-86-7714-01 19 35617312 35617312 G T LGI4 Silent p.P387P 0.30 TCGA-86-7714-01 19 41115743 41115743 C T LTBP4 Silent p.G617G 0.33 TCGA-86-7714-01 19 48342877 48342877 T C CRX Missense_Mutation p.S185P 0.24 tolerated(0.16) benign(0.028) TCGA-86-7714-01 19 49933995 49933995 G A SLC17A7 Silent p.V488V 0.26 TCGA-86-7714-01 19 58640680 58640680 C T ZNF329 Missense_Mutation p.C64Y 0.17 tolerated(0.83) benign(0.001) TCGA-86-7714-01 1 1273747 1273747 T A DVL1 Missense_Mutation p.Y445F 0.42 tolerated(0.06) benign(0.115) TCGA-86-7714-01 1 158687501 158687501 G A OR6K3 Silent p.I135I 0.28 TCGA-86-7714-01 1 164768988 164768988 G T PBX1 Missense_Mutation p.R188L 0.28 deleterious(0) probably_damaging(0.996) TCGA-86-7714-01 1 169677576 169677576 C A SELL Missense_Mutation p.A165S 0.34 tolerated(0.47) possibly_damaging(0.482) TCGA-86-7714-01 1 169677577 169677577 C A SELL Missense_Mutation p.K164N 0.34 deleterious(0) probably_damaging(1) TCGA-86-7714-01 1 196927176 196927176 C G CFHR2 Missense_Mutation p.Q196E 0.25 tolerated(1) benign(0.004) TCGA-86-7714-01 1 203452824 203452824 G T PRELP Missense_Mutation p.R171L 0.32 tolerated(0.2) benign(0.175) TCGA-86-7714-01 1 203708726 203708726 C G ATP2B4 Missense_Mutation p.P1121R 0.24 deleterious(0.04) possibly_damaging(0.462) TCGA-86-7714-01 1 204415219 204415219 G A PIK3C2B Missense_Mutation p.S848L 0.34 tolerated(0.08) benign(0.004) TCGA-86-7714-01 1 223939704 223939713 CAAGCTGGAA - CAPN2 Frame_Shift_Del p.S303Lfs*2 0.15 TCGA-86-7714-01 1 24460774 24460774 C G IL22RA1 Missense_Mutation p.R153P 0.29 tolerated(0.17) benign(0.002) TCGA-86-7714-01 1 247202725 247202725 G A ZNF670 Silent p.L40L 0.29 TCGA-86-7714-01 1 247902164 247902164 C A OR14K1 Missense_Mutation p.S83Y 0.28 deleterious(0.02) benign(0.256) TCGA-86-7714-01 1 248308974 248308974 C A OR2M5 Silent p.A175A 0.22 TCGA-86-7714-01 1 62613980 62613980 G T INADL Missense_Mutation p.A1766S 0.28 tolerated(0.11) possibly_damaging(0.564) TCGA-86-7714-01 1 7912998 7912998 A T UTS2 Intron 0.18 TCGA-86-7714-01 1 84880520 84880520 G A DNASE2B Missense_Mutation p.G352E 0.20 tolerated(0.92) benign(0.026) TCGA-86-7714-01 20 10389284 10389284 C A MKKS Nonsense_Mutation p.E385* 0.23 TCGA-86-7714-01 20 32341111 32341111 G T ZNF341 Missense_Mutation p.G208V 0.25 tolerated(0.38) benign(0.133) TCGA-86-7714-01 20 40049350 40049350 G A CHD6 Silent p.I1975I 0.30 TCGA-86-7714-01 20 8737710 8737710 A G PLCB1 Silent p.T847T 0.14 TCGA-86-7714-01 22 29446751 29446751 C T ZNRF3 Missense_Mutation p.P861L 0.36 tolerated_low_confidence(0.94) benign(0.002) TCGA-86-7714-01 22 36902321 36902321 T A FOXRED2 Missense_Mutation p.Q50L 0.37 deleterious(0.01) possibly_damaging(0.694) TCGA-86-7714-01 2 120639678 120639678 C T PTPN4 Missense_Mutation p.P140L 0.26 tolerated(0.5) benign(0.014) TCGA-86-7714-01 2 170002321 170002321 C T LRP2 Silent p.T4308T 0.25 TCGA-86-7714-01 2 185801342 185801342 G T ZNF804A Missense_Mutation p.V407F 0.41 deleterious(0.04) benign(0.086) TCGA-86-7714-01 2 202252542 202252542 G A TRAK2 Missense_Mutation p.P527L 0.36 deleterious(0.01) benign(0.178) TCGA-86-7714-01 2 233408313 233408313 G A CHRNG Silent p.L313L 0.35 TCGA-86-7714-01 2 32117109 32117109 C A MEMO1 Missense_Mutation p.A178S 0.30 tolerated(0.41) benign(0.159) TCGA-86-7714-01 2 32738056 32738056 G T BIRC6 Missense_Mutation p.R3468I 0.27 benign(0.021) TCGA-86-7714-01 2 39212960 39212960 G C SOS1 3'UTR 0.32 TCGA-86-7714-01 3 14154364 14154364 T A CHCHD4 3'UTR 0.21 TCGA-86-7714-01 3 14154427 14154427 A G CHCHD4 Missense_Mutation p.I143T 0.27 tolerated(1) unknown(0) TCGA-86-7714-01 3 143691464 143691472 GCGAGCCCC - C3orf58 In_Frame_Del p.P99_E101del 0.15 TCGA-86-7714-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.31 tolerated(0.36) benign(0.4) TCGA-86-7714-01 3 47098880 47098881 - T SETD2 Frame_Shift_Ins p.R2132Tfs*22 0.23 TCGA-86-7714-01 3 47163361 47163361 T - SETD2 Frame_Shift_Del p.K922Sfs*8 0.25 TCGA-86-7714-01 3 52448547 52448547 G T PHF7 Nonsense_Mutation p.E44* 0.20 TCGA-86-7714-01 4 183696138 183696138 G A TENM3 Silent p.L1712L 0.15 TCGA-86-7714-01 5 140743981 140743981 C T PCDHGA5 Silent p.S28S 0.40 TCGA-86-7714-01 5 141694060 141694060 C T SPRY4 Missense_Mutation p.G228D 0.34 deleterious(0) probably_damaging(1) TCGA-86-7714-01 6 29640660 29640660 G T ZFP57 Missense_Mutation p.P410T 0.09 deleterious(0.02) benign(0.19) TCGA-86-7714-01 6 32163539 32163539 T A NOTCH4 Missense_Mutation p.H1896L 0.20 tolerated_low_confidence(0.33) benign(0.024) TCGA-86-7714-01 6 56351986 56351986 A T DST Missense_Mutation p.L4365Q 0.40 benign(0.31) TCGA-86-7714-01 7 111462421 111462421 T C DOCK4 Missense_Mutation p.N976S 0.22 tolerated(0.61) benign(0.004) TCGA-86-7714-01 7 112724502 112724502 A G GPR85 Missense_Mutation p.L92P 0.34 tolerated(0.06) benign(0.309) TCGA-86-7714-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-86-7714-01 7 149503054 149503054 G T SSPO RNA 0.26 TCGA-86-7714-01 7 20778661 20778661 G T ABCB5 Missense_Mutation p.A975S 0.46 deleterious(0.05) possibly_damaging(0.686) TCGA-86-7714-01 7 56155447 56155447 G C PHKG1 Missense_Mutation p.R36G 0.25 deleterious(0) probably_damaging(0.954) TCGA-86-7714-01 7 98506438 98506438 C G TRRAP Silent p.L401L 0.36 TCGA-86-7714-01 8 10469767 10469767 C A RP1L1 Missense_Mutation p.G614V 0.32 probably_damaging(0.96) TCGA-86-7714-01 8 23538909 23538909 T C NKX3-1 Missense_Mutation p.Y177C 0.35 deleterious(0) probably_damaging(0.998) TCGA-86-7714-01 9 32784744 32784744 A C TMEM215 Missense_Mutation p.E188A 0.38 tolerated_low_confidence(0.87) benign(0.026) TCGA-86-7714-01 9 5753566 5753566 A T KIAA1432 Missense_Mutation p.I508F 0.48 deleterious(0.01) benign(0.1) TCGA-86-7714-01 9 70177104 70177104 C A FOXD4L5 Missense_Mutation p.A294S 0.08 tolerated_low_confidence(0.12) benign(0.002) TCGA-86-7714-01 X 11196287 11196287 C T ARHGAP6 Missense_Mutation p.R521H 0.11 deleterious(0.01) probably_damaging(0.993) TCGA-86-7714-01 X 1464277 1464277 A G IL3RA Missense_Mutation p.R45G 0.33 tolerated(1) benign(0) TCGA-86-7714-01 X 151092402 151092402 G A MAGEA4 Missense_Mutation p.S89N 0.38 tolerated(0.11) probably_damaging(0.969) TCGA-86-7714-01 X 89177720 89177720 C A TGIF2LX Silent p.A212A 0.43 TCGA-86-7953-01 10 118969188 118969188 C A KCNK18 Missense_Mutation p.S178Y 0.20 deleterious(0.03) benign(0.405) TCGA-86-7953-01 10 61028428 61028428 C A FAM13C Missense_Mutation p.S276I 0.14 deleterious(0) possibly_damaging(0.459) TCGA-86-7953-01 10 63851657 63851657 A G ARID5B Missense_Mutation p.K812R 0.30 tolerated(0.13) benign(0.001) TCGA-86-7953-01 10 90966519 90966519 C A CH25H Missense_Mutation p.W177C 0.12 deleterious(0) probably_damaging(0.984) TCGA-86-7953-01 11 47772566 47772566 T G FNBP4 Missense_Mutation p.S270R 0.05 deleterious(0.01) benign(0.221) TCGA-86-7953-01 11 55065453 55065453 T C TRIM51HP RNA 0.28 TCGA-86-7953-01 12 101750705 101750706 - T UTP20 Frame_Shift_Ins p.L1847Ffs*69 0.18 TCGA-86-7953-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.21 deleterious(0) benign(0.361) TCGA-86-7953-01 12 49578774 49578774 C G TUBA1A 3'UTR 0.05 TCGA-86-7953-01 12 59266563 59266563 C T LRIG3 Missense_Mutation p.D1051N 0.08 deleterious_low_confidence(0) benign(0.193) TCGA-86-7953-01 12 97303606 97303606 A C NEDD1 Silent p.T30T 0.24 TCGA-86-7953-01 13 113770093 113770093 G C F7 Missense_Mutation p.G184R 0.07 deleterious(0.02) benign(0.081) TCGA-86-7953-01 14 106307374 106307374 C T IGHD Missense_Mutation p.R222Q 0.25 tolerated(0.91) benign(0) TCGA-86-7953-01 15 48062769 48062769 C A SEMA6D Missense_Mutation p.A670D 0.17 deleterious(0.03) probably_damaging(0.997) TCGA-86-7953-01 16 30087726 30087726 C T PPP4C Nonsense_Mutation p.Q10* 0.24 TCGA-86-7953-01 16 31499039 31499039 G A SLC5A2 Missense_Mutation p.G282R 0.19 deleterious(0.01) probably_damaging(1) TCGA-86-7953-01 16 4242062 4242062 A T SRL 3'UTR 0.32 TCGA-86-7953-01 16 55895336 55895336 C T CES5A Silent p.L330L 0.12 TCGA-86-7953-01 16 74957890 74957890 G A WDR59 Silent p.Y221Y 0.09 TCGA-86-7953-01 16 89251625 89251625 G A CDH15 Missense_Mutation p.E183K 0.22 tolerated(0.77) benign(0.426) TCGA-86-7953-01 16 9934805 9934805 T A GRIN2A Silent p.G495G 0.26 TCGA-86-7953-01 17 27809235 27809235 T G TAOK1 Nonsense_Mutation p.L195* 0.20 TCGA-86-7953-01 17 38788570 38788570 C A SMARCE1 Missense_Mutation p.Q197H 0.22 tolerated(0.19) possibly_damaging(0.7) TCGA-86-7953-01 17 45748079 45748079 T A KPNB1 Missense_Mutation p.S476R 0.20 deleterious(0.01) probably_damaging(0.98) TCGA-86-7953-01 17 47007911 47007911 A G SNF8 Missense_Mutation p.W235R 0.18 deleterious(0) probably_damaging(0.995) TCGA-86-7953-01 18 61154281 61154281 C T SERPINB5 Missense_Mutation p.R91W 0.06 deleterious(0) probably_damaging(0.997) TCGA-86-7953-01 18 61304984 61304984 A T SERPINB4 Missense_Mutation p.I381N 0.13 deleterious(0) probably_damaging(0.998) TCGA-86-7953-01 19 13370478 13370478 C T CACNA1A Missense_Mutation p.A1430T 0.32 possibly_damaging(0.908) TCGA-86-7953-01 19 9922278 9922278 G C FBXL12 Missense_Mutation p.A92G 0.16 deleterious(0.02) probably_damaging(0.91) TCGA-86-7953-01 1 211749519 211749519 C G SLC30A1 Missense_Mutation p.M245I 0.07 tolerated(0.08) possibly_damaging(0.842) TCGA-86-7953-01 1 57333290 57333290 G A C8A Missense_Mutation p.R29K 0.33 tolerated(0.08) benign(0.035) TCGA-86-7953-01 21 35288054 35288054 G A ATP5O Missense_Mutation p.A5V 0.43 deleterious(0.04) benign(0.016) TCGA-86-7953-01 22 43525256 43525256 T C BIK Missense_Mutation p.L143P 0.18 tolerated_low_confidence(0.06) possibly_damaging(0.472) TCGA-86-7953-01 2 101095849 101095849 C G NMS Missense_Mutation p.A99G 0.22 tolerated(0.16) possibly_damaging(0.681) TCGA-86-7953-01 2 211459247 211459247 T C CPS1 Missense_Mutation p.F400L 0.08 deleterious(0.01) possibly_damaging(0.661) TCGA-86-7953-01 2 216990664 216990664 C G XRCC5 Silent p.V236V 0.06 TCGA-86-7953-01 2 37487473 37487473 G T PRKD3 Silent p.R647R 0.11 TCGA-86-7953-01 3 10970891 10970891 G C SLC6A11 Missense_Mutation p.V413L 0.10 deleterious(0.02) possibly_damaging(0.703) TCGA-86-7953-01 3 147114019 147114019 A T ZIC4 Missense_Mutation p.L153Q 0.14 deleterious(0.02) probably_damaging(0.986) TCGA-86-7953-01 3 42679747 42679747 C T NKTR Missense_Mutation p.R851W 0.29 tolerated_low_confidence(0.37) benign(0.004) TCGA-86-7953-01 3 69230696 69230696 T C FRMD4B Silent p.Q735Q 0.24 TCGA-86-7953-01 4 134073783 134073783 G A PCDH10 Missense_Mutation p.A830T 0.24 tolerated(0.16) benign(0.359) TCGA-86-7953-01 4 144109089 144109089 G T USP38 Missense_Mutation p.A265S 0.16 tolerated(0.22) possibly_damaging(0.574) TCGA-86-7953-01 4 144109090 144109090 C T USP38 Missense_Mutation p.A265V 0.15 tolerated(0.11) benign(0.443) TCGA-86-7953-01 4 149356661 149356661 G A NR3C2 Missense_Mutation p.P451L 0.20 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-86-7953-01 4 89688723 89688723 C A FAM13A Missense_Mutation p.G520V 0.10 tolerated(0.35) benign(0.002) TCGA-86-7953-01 5 137503765 137503765 G A BRD8 Silent p.V215V 0.26 TCGA-86-7953-01 5 140482633 140482633 A G PCDHB3 3'UTR 0.18 TCGA-86-7953-01 5 140579415 140579415 T C PCDHB11 Missense_Mutation p.M23T 0.06 tolerated_low_confidence(0.08) benign(0.028) TCGA-86-7953-01 5 36036073 36036073 G C UGT3A2 Nonsense_Mutation p.Y433* 0.04 TCGA-86-7953-01 5 42719377 42719377 A C GHR Missense_Mutation p.M590L 0.12 tolerated(0.22) benign(0.006) TCGA-86-7953-01 5 82786059 82786059 G T VCAN Silent p.V71V 0.24 TCGA-86-7953-01 6 144181578 144181578 G A LTV1 Missense_Mutation p.D271N 0.17 deleterious(0) probably_damaging(0.944) TCGA-86-7953-01 6 32825852 32825852 C A PSMB9 Silent p.R111R 0.40 TCGA-86-7953-01 6 43251551 43251551 G T TTBK1 Missense_Mutation p.A1025S 0.13 benign(0.053) TCGA-86-7953-01 7 104783653 104783653 A G SRPK2 Missense_Mutation p.I313T 0.24 tolerated(0.56) benign(0.005) TCGA-86-7953-01 7 151902288 151902288 C A KMT2C Silent p.R1288R 0.12 TCGA-86-7953-01 7 31378328 31378328 G A NEUROD6 Silent p.A185A 0.06 TCGA-86-7953-01 7 5086006 5086006 G C RBAK 5'UTR 0.29 TCGA-86-7953-01 7 56126203 56126203 A G CCT6A Missense_Mutation p.I292V 0.25 tolerated(0.09) benign(0.021) TCGA-86-7953-01 7 99084745 99084745 G T ZNF789 Missense_Mutation p.Q304H 0.34 deleterious(0.04) possibly_damaging(0.73) TCGA-86-7953-01 X 122319830 122319830 G A GRIA3 Missense_Mutation p.V86M 0.16 tolerated(0.4) possibly_damaging(0.857) TCGA-86-7953-01 X 18802165 18802165 A T PPEF1 Missense_Mutation p.K304M 0.12 deleterious(0) probably_damaging(0.988) TCGA-86-7953-01 X 44088989 44088989 G T EFHC2 Missense_Mutation p.L553M 0.22 deleterious(0.03) benign(0.287) TCGA-86-7953-01 X 65423206 65423206 G T HEPH Missense_Mutation p.G747V 0.23 deleterious(0) probably_damaging(0.984) TCGA-86-7953-01 X 90691732 90691732 G C PABPC5 3'UTR 0.24 TCGA-86-7954-01 10 102258531 102258531 C A SEC31B Missense_Mutation p.A539S 0.13 tolerated(0.52) benign(0.006) TCGA-86-7954-01 10 104210870 104210870 T A C10orf95 Missense_Mutation p.S40C 0.15 tolerated_low_confidence(0.12) possibly_damaging(0.843) TCGA-86-7954-01 10 115423645 115423645 G A NRAP 5'UTR 0.11 TCGA-86-7954-01 10 134884542 134884542 G A GPR123 Missense_Mutation p.R37Q 0.28 deleterious_low_confidence(0) benign(0.417) TCGA-86-7954-01 10 18280162 18280162 T A SLC39A12 Nonsense_Mutation p.L451* 0.14 TCGA-86-7954-01 10 23482775 23482775 C G PTF1A Silent p.L309L 0.06 TCGA-86-7954-01 10 37488690 37488690 G T ANKRD30A Missense_Mutation p.V862F 0.11 tolerated(0.38) benign(0.017) TCGA-86-7954-01 10 55582031 55582031 G T PCDH15 Missense_Mutation p.P1821T 0.12 deleterious_low_confidence(0) unknown(0) TCGA-86-7954-01 10 69926170 69926170 C T MYPN Missense_Mutation p.P574S 0.15 tolerated(0.22) benign(0.05) TCGA-86-7954-01 10 82049159 82049159 G T MAT1A Silent p.G7G 0.20 TCGA-86-7954-01 10 93784690 93784690 A G BTAF1 Missense_Mutation p.I1681V 0.26 tolerated(1) benign(0.004) TCGA-86-7954-01 10 96033397 96033397 G T PLCE1 Missense_Mutation p.D1529Y 0.12 tolerated(1) possibly_damaging(0.781) TCGA-86-7954-01 10 97918519 97918519 G T ZNF518A RNA 0.22 TCGA-86-7954-01 11 103907653 103907653 G A DDI1 Missense_Mutation p.E35K 0.09 deleterious(0.03) possibly_damaging(0.563) TCGA-86-7954-01 11 106681009 106681009 T G GUCY1A2 Silent p.R468R 0.08 TCGA-86-7954-01 11 121474959 121474959 C T SORL1 Missense_Mutation p.A1526V 0.18 tolerated(0.29) benign(0.13) TCGA-86-7954-01 11 123624359 123624359 T A OR6X1 Missense_Mutation p.I290F 0.16 deleterious(0.02) benign(0.002) TCGA-86-7954-01 11 123624360 123624360 A T OR6X1 Silent p.T289T 0.16 TCGA-86-7954-01 11 123847690 123847690 C A OR10S1 Missense_Mutation p.A237S 0.19 tolerated(0.42) benign(0.026) TCGA-86-7954-01 11 125765571 125765571 G C PUS3 Silent p.L164L 0.08 TCGA-86-7954-01 11 33094160 33094160 A G TCP11L1 Missense_Mutation p.N490D 0.12 deleterious(0) probably_damaging(1) TCGA-86-7954-01 11 40137641 40137641 G C LRRC4C Missense_Mutation p.R68G 0.22 tolerated(0.35) benign(0.003) TCGA-86-7954-01 11 5510860 5510860 A G OR52D1 Silent p.L308L 0.14 TCGA-86-7954-01 11 55606598 55606598 A T OR5D16 Missense_Mutation p.H124L 0.20 deleterious(0.02) benign(0.001) TCGA-86-7954-01 11 55904768 55904768 G T OR8J3 Missense_Mutation p.L143M 0.05 tolerated(0.12) possibly_damaging(0.908) TCGA-86-7954-01 11 56114119 56114119 A G OR8K1 Missense_Mutation p.E202G 0.13 deleterious_low_confidence(0.02) possibly_damaging(0.495) TCGA-86-7954-01 11 65349331 65349331 A G EHBP1L1 Silent p.P396P 0.19 TCGA-86-7954-01 11 69456071 69456071 G C CCND1 5'UTR 0.09 TCGA-86-7954-01 11 92887297 92887297 C G SLC36A4 Missense_Mutation p.R395T 0.11 deleterious(0) probably_damaging(0.993) TCGA-86-7954-01 12 124364265 124364265 G T DNAH10 Missense_Mutation p.D2733Y 0.29 probably_damaging(1) TCGA-86-7954-01 12 125270965 125270965 C T SCARB1 Missense_Mutation p.V447I 0.06 tolerated(0.76) benign(0.064) TCGA-86-7954-01 12 15742395 15742395 C A PTPRO Silent p.G1139G 0.23 TCGA-86-7954-01 12 21457474 21457474 A T SLCO1A2 Missense_Mutation p.V159E 0.04 deleterious(0) possibly_damaging(0.653) TCGA-86-7954-01 12 32908396 32908396 C T YARS2 Missense_Mutation p.R138Q 0.31 tolerated(0.47) benign(0.003) TCGA-86-7954-01 12 44124307 44124307 C A PUS7L Missense_Mutation p.D660Y 0.05 deleterious(0.01) possibly_damaging(0.863) TCGA-86-7954-01 12 49221499 49221499 C T CACNB3 Silent p.H424H 0.25 TCGA-86-7954-01 12 50393004 50393004 C A RACGAP1 Nonsense_Mutation p.E267* 0.67 TCGA-86-7954-01 12 53400121 53400121 C G EIF4B 5'UTR 0.33 TCGA-86-7954-01 12 53709521 53709521 T C AAAS Silent p.S99S 0.21 TCGA-86-7954-01 12 58150755 58150755 G A MARCH9 Missense_Mutation p.C134Y 0.08 tolerated(0.7) possibly_damaging(0.855) TCGA-86-7954-01 12 69326608 69326608 G A CPM Missense_Mutation p.P4S 0.28 deleterious_low_confidence(0.04) benign(0) TCGA-86-7954-01 12 70049365 70049365 G A BEST3 Silent p.P443P 0.06 TCGA-86-7954-01 12 81610762 81610762 C A ACSS3 Silent p.V479V 0.11 TCGA-86-7954-01 12 8814677 8814677 C G MFAP5 Silent p.V8V 0.21 TCGA-86-7954-01 13 109613951 109613951 C T MYO16 Missense_Mutation p.A679V 0.12 deleterious(0.02) possibly_damaging(0.794) TCGA-86-7954-01 13 25077811 25077811 C A PARP4 Missense_Mutation p.G35V 0.18 deleterious(0) probably_damaging(1) TCGA-86-7954-01 13 37679150 37679150 C T CSNK1A1L Missense_Mutation p.E82K 0.20 deleterious_low_confidence(0.02) benign(0.012) TCGA-86-7954-01 13 70681461 70681461 G T KLHL1 Nonsense_Mutation p.S124* 0.10 TCGA-86-7954-01 13 84453625 84453625 C A SLITRK1 Missense_Mutation p.W673L 0.17 tolerated(0.65) benign(0.056) TCGA-86-7954-01 14 106054582 106054582 T C IGHA2 Missense_Mutation p.R51G 0.14 tolerated(0.45) benign(0.011) TCGA-86-7954-01 14 20612483 20612483 C T OR4N5 Missense_Mutation p.L197F 0.11 tolerated(0.23) probably_damaging(0.978) TCGA-86-7954-01 14 21168017 21168017 T A RNASE4 3'UTR 0.24 TCGA-86-7954-01 14 31570135 31570135 C T HECTD1 3'UTR 0.11 TCGA-86-7954-01 14 33015129 33015129 A T AKAP6 Missense_Mutation p.S424C 0.12 deleterious(0) probably_damaging(0.998) TCGA-86-7954-01 14 73420894 73420894 C T DCAF4 Silent p.L277L 0.13 TCGA-86-7954-01 14 79434666 79434666 G A NRXN3 Missense_Mutation p.G667E 0.11 deleterious(0) probably_damaging(0.995) TCGA-86-7954-01 14 90764693 90764693 C A NRDE2 Missense_Mutation p.G526V 0.10 deleterious(0) probably_damaging(0.999) TCGA-86-7954-01 14 91282527 91282527 A G TTC7B Missense_Mutation p.I38T 0.14 tolerated(0.55) benign(0.005) TCGA-86-7954-01 14 94107578 94107578 C T UNC79 Missense_Mutation p.T1825M 0.16 deleterious(0.01) possibly_damaging(0.838) TCGA-86-7954-01 14 94107579 94107579 G T UNC79 Silent p.T1825T 0.16 TCGA-86-7954-01 14 94776296 94776296 A T SERPINA6 Missense_Mutation p.F221I 0.10 deleterious(0) probably_damaging(0.993) TCGA-86-7954-01 14 94929540 94929540 G A SERPINA9 Missense_Mutation p.P400S 0.12 tolerated(0.13) benign(0.103) TCGA-86-7954-01 15 23811411 23811411 C G MKRN3 Missense_Mutation p.P161R 0.12 tolerated(0.08) probably_damaging(0.927) TCGA-86-7954-01 15 25475894 25475894 C A SNORD115-33 5'Flank 0.18 TCGA-86-7954-01 15 43494107 43494107 G T EPB42 Silent p.A646A 0.12 TCGA-86-7954-01 15 51696967 51696967 T C GLDN 3'UTR 0.12 TCGA-86-7954-01 15 52553230 52553230 C A MYO5C Missense_Mutation p.S381I 0.09 deleterious(0.05) benign(0.061) TCGA-86-7954-01 15 69003979 69003979 G T CORO2B Silent p.L194L 0.12 TCGA-86-7954-01 15 69339827 69339828 - G NOX5 Frame_Shift_Ins p.I591Hfs*43 0.07 TCGA-86-7954-01 15 77908159 77908159 C T LINGO1 Silent p.V30V 0.25 TCGA-86-7954-01 15 80415143 80415143 G A ZFAND6 Splice_Site p.X122_splice 0.14 TCGA-86-7954-01 16 14041714 14041714 G T ERCC4 Missense_Mutation p.R754L 0.08 deleterious(0.01) benign(0.44) TCGA-86-7954-01 16 14742340 14742340 A T BFAR Missense_Mutation p.Q120L 0.19 tolerated(0.39) benign(0.083) TCGA-86-7954-01 16 15832534 15832534 G T MYH11 Silent p.L1010L 0.12 TCGA-86-7954-01 16 19127309 19127309 C T ITPRIPL2 Missense_Mutation p.A509V 0.09 tolerated(1) benign(0.002) TCGA-86-7954-01 16 2376171 2376171 G A ABCA3 Silent p.N53N 0.18 TCGA-86-7954-01 16 30581727 30581727 G A ZNF688 Missense_Mutation p.P114L 0.06 tolerated(0.14) benign(0.003) TCGA-86-7954-01 16 4242645 4242645 C G SRL Missense_Mutation p.E311Q 0.08 tolerated(0.06) probably_damaging(0.999) TCGA-86-7954-01 16 55513493 55513493 C T MMP2 Silent p.I34I 0.08 TCGA-86-7954-01 16 55568378 55568378 A G LPCAT2 Silent p.Q262Q 0.09 TCGA-86-7954-01 16 55880391 55880391 T G CES5A Missense_Mutation p.Q596P 0.10 deleterious_low_confidence(0.03) benign(0.153) TCGA-86-7954-01 16 55880393 55880393 G T CES5A Silent p.L595L 0.09 TCGA-86-7954-01 16 68293237 68293237 G A PLA2G15 Missense_Mutation p.D306N 0.06 deleterious(0.01) probably_damaging(0.952) TCGA-86-7954-01 16 89354971 89354971 G C ANKRD11 Missense_Mutation p.P237A 0.16 probably_damaging(0.971) TCGA-86-7954-01 16 9858063 9858063 G A GRIN2A Missense_Mutation p.P1113L 0.07 deleterious(0.01) benign(0.229) TCGA-86-7954-01 17 11895931 11895931 T C ZNF18 Silent p.P72P 0.13 TCGA-86-7954-01 17 26659009 26659009 C T IFT20 Missense_Mutation p.M27I 0.35 deleterious(0.03) benign(0.177) TCGA-86-7954-01 17 26696336 26696336 A T VTN Missense_Mutation p.C215S 0.08 deleterious(0) probably_damaging(1) TCGA-86-7954-01 17 27182139 27182139 G A ERAL1 Silent p.R29R 0.14 TCGA-86-7954-01 17 34493298 34493298 A G TBC1D3B 3'UTR 0.09 TCGA-86-7954-01 17 38297833 38297833 G T CASC3 Silent p.S90S 0.23 TCGA-86-7954-01 17 40001820 40001820 G A KLHL10 Missense_Mutation p.R376H 0.15 deleterious(0) probably_damaging(1) TCGA-86-7954-01 17 56272480 56272480 C T EPX Silent p.G250G 0.07 TCGA-86-7954-01 17 74720119 74720119 T C JMJD6 Silent p.P180P 0.13 TCGA-86-7954-01 17 7577538 7577538 C A TP53 Missense_Mutation p.R248L 0.39 deleterious(0) probably_damaging(1) TCGA-86-7954-01 18 48434439 48434439 G T ME2 Missense_Mutation p.A39S 0.11 deleterious(0.04) probably_damaging(0.999) TCGA-86-7954-01 18 64172343 64172343 G A CDH19 Silent p.S675S 0.12 TCGA-86-7954-01 19 19606951 19606951 G T GATAD2A Nonsense_Mutation p.G283* 0.08 TCGA-86-7954-01 19 20828086 20828086 C T ZNF626 Intron 0.27 TCGA-86-7954-01 19 3113345 3113345 C T GNA11 Silent p.I113I 0.11 TCGA-86-7954-01 19 3113402 3113402 C G GNA11 Missense_Mutation p.I132M 0.12 tolerated(0.27) benign(0.25) TCGA-86-7954-01 19 40580555 40580555 C T ZNF780A Missense_Mutation p.M599I 0.14 tolerated(0.28) benign(0) TCGA-86-7954-01 19 44223786 44223786 G T IRGC Missense_Mutation p.R359L 0.33 tolerated(0.18) probably_damaging(0.93) TCGA-86-7954-01 19 50881968 50881968 C A NR1H2 Missense_Mutation p.A221E 0.08 tolerated(0.06) benign(0.012) TCGA-86-7954-01 19 51466708 51466708 C T KLK6 Missense_Mutation p.D99N 0.14 tolerated(1) benign(0.002) TCGA-86-7954-01 19 5456203 5456203 C T ZNRF4 Missense_Mutation p.A234V 0.16 tolerated(1) benign(0) TCGA-86-7954-01 19 57326922 57326922 C T PEG3 Missense_Mutation p.R963H 0.27 tolerated(0.7) benign(0.005) TCGA-86-7954-01 19 5866578 5866578 G A FUT5 3'UTR 0.15 TCGA-86-7954-01 19 58850395 58850395 G A ZSCAN22 Silent p.T393T 0.14 TCGA-86-7954-01 19 9582012 9582012 T A ZNF560 Missense_Mutation p.Q94L 0.09 deleterious_low_confidence(0.01) benign(0.403) TCGA-86-7954-01 19 9939267 9939267 G A UBL5 Splice_Site p.X19_splice 0.23 TCGA-86-7954-01 1 103544391 103544391 G C COL11A1 Missense_Mutation p.T104R 0.32 probably_damaging(1) TCGA-86-7954-01 1 110607216 110607216 C T ALX3 Missense_Mutation p.R196Q 0.22 deleterious(0) probably_damaging(0.968) TCGA-86-7954-01 1 1225876 1225876 C T SCNN1D Silent p.L600L 0.06 TCGA-86-7954-01 1 12941866 12941866 T C PRAMEF4 Silent p.P228P 0.18 TCGA-86-7954-01 1 150691947 150691947 A C HORMAD1 Splice_Site p.X11_splice 0.20 TCGA-86-7954-01 1 151316295 151316295 G - RFX5 Frame_Shift_Del p.L207* 0.09 TCGA-86-7954-01 1 156815425 156815425 C T INSRR Silent p.A720A 0.11 TCGA-86-7954-01 1 196227558 196227558 G T KCNT2 Missense_Mutation p.R993S 0.33 tolerated(0.23) benign(0.274) TCGA-86-7954-01 1 196706028 196706028 C T CFH Missense_Mutation p.R830W 0.24 deleterious(0.03) benign(0.003) TCGA-86-7954-01 1 196977760 196977760 C A CFHR5 Missense_Mutation p.P553T 0.24 tolerated(0.27) benign(0) TCGA-86-7954-01 1 197297974 197297974 G C CRB1 Missense_Mutation p.D165H 0.17 deleterious(0) probably_damaging(0.988) TCGA-86-7954-01 1 211093086 211093086 G T KCNH1 Nonsense_Mutation p.S453* 0.20 TCGA-86-7954-01 1 211654671 211654671 A G RD3 Silent p.L29L 0.20 TCGA-86-7954-01 1 215824116 215824116 C A USH2A Missense_Mutation p.A4721S 0.26 benign(0.122) TCGA-86-7954-01 1 248525679 248525679 G T OR2T4 Missense_Mutation p.R266L 0.26 deleterious(0.01) possibly_damaging(0.734) TCGA-86-7954-01 1 27632808 27632809 - G WDTC1 Frame_Shift_Ins p.A658Cfs*5 0.11 TCGA-86-7954-01 1 38227381 38227381 C T EPHA10 Silent p.P182P 0.05 TCGA-86-7954-01 1 55081693 55081693 C T FAM151A Missense_Mutation p.G139S 0.19 deleterious(0.02) probably_damaging(0.956) TCGA-86-7954-01 1 65895576 65895576 C T LEPROT Missense_Mutation p.H42Y 0.15 tolerated(1) benign(0.001) TCGA-86-7954-01 1 66058391 66058391 G A LEPR Silent p.Q182Q 0.14 TCGA-86-7954-01 1 76363664 76363664 A G MSH4 Missense_Mutation p.M810V 0.22 tolerated(0.16) benign(0) TCGA-86-7954-01 1 94944116 94944116 A G ABCD3 Intron 0.28 TCGA-86-7954-01 20 51872726 51872726 C T TSHZ2 Missense_Mutation p.T910M 0.06 deleterious(0) probably_damaging(0.999) TCGA-86-7954-01 20 62703601 62703601 C G TCEA2 3'UTR 0.11 TCGA-86-7954-01 20 7886899 7886899 T A HAO1 Missense_Mutation p.Y208F 0.32 tolerated(0.16) probably_damaging(0.99) TCGA-86-7954-01 21 31709706 31709706 G T KRTAP27-1 Missense_Mutation p.P94H 0.12 tolerated(0.05) benign(0.096) TCGA-86-7954-01 22 26706657 26706657 G C SEZ6L Missense_Mutation p.Q512H 0.22 tolerated(0.13) benign(0.005) TCGA-86-7954-01 22 37419908 37419908 T C MPST Intron 0.22 TCGA-86-7954-01 2 113819803 113819803 G C IL36RN Missense_Mutation p.G73A 0.08 tolerated(0.24) benign(0.003) TCGA-86-7954-01 2 113959027 113959027 C T PSD4 3'UTR 0.07 TCGA-86-7954-01 2 128699639 128699639 G T SAP130 Missense_Mutation p.L1065I 0.06 tolerated_low_confidence(0.12) possibly_damaging(0.907) TCGA-86-7954-01 2 163200724 163200724 C T GCA 5'UTR 0.14 TCGA-86-7954-01 2 167298209 167298209 C T SCN7A Nonsense_Mutation p.W618* 0.27 TCGA-86-7954-01 2 177017742 177017742 G T HOXD3 5'UTR 0.30 TCGA-86-7954-01 2 179479084 179479084 G - TTN Intron 0.17 TCGA-86-7954-01 2 21233694 21233694 C A APOB Missense_Mutation p.D2016Y 0.32 possibly_damaging(0.87) TCGA-86-7954-01 2 230642091 230642091 T C TRIP12 Silent p.S1748S 0.12 TCGA-86-7954-01 2 26799015 26799015 G T C2orf70 Missense_Mutation p.R107L 0.12 deleterious(0) probably_damaging(0.912) TCGA-86-7954-01 2 28210901 28210901 G A BRE Missense_Mutation p.D83N 0.08 deleterious(0) probably_damaging(0.998) TCGA-86-7954-01 2 28764613 28764613 G C PLB1 Missense_Mutation p.E272Q 0.08 tolerated(0.59) benign(0.004) TCGA-86-7954-01 2 65299964 65299964 G A CEP68 Silent p.Q578Q 0.33 TCGA-86-7954-01 3 107938420 107938420 C G IFT57 Splice_Site p.X71_splice 0.15 TCGA-86-7954-01 3 112198407 112198407 G C BTLA Missense_Mutation p.L100V 0.08 deleterious(0) probably_damaging(0.998) TCGA-86-7954-01 3 113850099 113850099 G A DRD3 Missense_Mutation p.A291V 0.14 tolerated(0.26) benign(0.27) TCGA-86-7954-01 3 122289337 122289337 A G DTX3L Silent p.G657G 0.09 TCGA-86-7954-01 3 124103822 124103822 G C KALRN Missense_Mutation p.R632T 0.32 deleterious(0) unknown(0) TCGA-86-7954-01 3 133557048 133557048 T C RAB6B Missense_Mutation p.I153V 0.15 tolerated(0.12) benign(0.131) TCGA-86-7954-01 3 136183774 136183774 T A STAG1 Missense_Mutation p.Y421F 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-86-7954-01 3 157841731 157841731 G T RSRC1 Missense_Mutation p.G91W 0.41 deleterious_low_confidence(0) unknown(0) TCGA-86-7954-01 3 158531837 158531837 C T MFSD1 Silent p.L260L 0.10 TCGA-86-7954-01 3 158980554 158980554 G A IQCJ Intron 0.36 TCGA-86-7954-01 3 190993123 190993123 T C UTS2B Silent p.L84L 0.17 TCGA-86-7954-01 3 65342324 65342324 G A MAGI1 Missense_Mutation p.S1373F 0.12 deleterious_low_confidence(0.01) unknown(0) TCGA-86-7954-01 3 66436506 66436506 T G LRIG1 Missense_Mutation p.H563P 0.14 deleterious(0) probably_damaging(0.968) TCGA-86-7954-01 3 77651359 77651359 A T ROBO2 Splice_Site p.X968_splice 0.13 TCGA-86-7954-01 3 97806525 97806525 T A OR5AC2 Missense_Mutation p.F170Y 0.11 deleterious(0.01) probably_damaging(1) TCGA-86-7954-01 4 119944647 119944647 C T SYNPO2 Silent p.I56I 0.09 TCGA-86-7954-01 4 126411330 126411330 T C FAT4 Silent p.C4451C 0.08 TCGA-86-7954-01 4 128807298 128807298 C A PLK4 Nonsense_Mutation p.S258* 0.15 TCGA-86-7954-01 4 142643089 142643089 A T IL15 Silent p.A41A 0.10 TCGA-86-7954-01 4 159559173 159559173 A T RXFP1 Missense_Mutation p.N329Y 0.11 deleterious(0) probably_damaging(0.998) TCGA-86-7954-01 4 160274840 160274840 G C RAPGEF2 Missense_Mutation p.E1270D 0.09 tolerated_low_confidence(0.86) benign(0.003) TCGA-86-7954-01 4 176622830 176622830 C A GPM6A Silent p.L42L 0.09 TCGA-86-7954-01 4 48147134 48147134 C A TEC Nonsense_Mutation p.E478* 0.21 TCGA-86-7954-01 4 52943078 52943078 C A SPATA18 Missense_Mutation p.R298S 0.09 deleterious(0) possibly_damaging(0.451) TCGA-86-7954-01 5 120021977 120021977 C A PRR16 Missense_Mutation p.P140H 0.11 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-86-7954-01 5 132424158 132424158 G T HSPA4 Missense_Mutation p.V350L 0.10 deleterious(0.04) possibly_damaging(0.718) TCGA-86-7954-01 5 133473755 133473755 G T TCF7 Missense_Mutation p.K149N 0.08 tolerated(0.5) benign(0.173) TCGA-86-7954-01 5 133997053 133997053 G T SEC24A Missense_Mutation p.Q114H 0.12 deleterious_low_confidence(0.01) benign(0.011) TCGA-86-7954-01 5 135276799 135276799 T A FBXL21 RNA 0.14 TCGA-86-7954-01 5 140208228 140208228 A T PCDHA6 Silent p.I184I 0.07 TCGA-86-7954-01 5 140870425 140870425 G A PCDHGC5 Missense_Mutation p.G540S 0.09 deleterious(0) probably_damaging(1) TCGA-86-7954-01 5 150934210 150934210 G A FAT2 Missense_Mutation p.P1220S 0.09 probably_damaging(0.999) TCGA-86-7954-01 5 150947878 150947878 C T FAT2 Silent p.V205V 0.09 TCGA-86-7954-01 5 151784216 151784216 G A NMUR2 Silent p.R153R 0.14 TCGA-86-7954-01 5 156898697 156898697 G A NIPAL4 Missense_Mutation p.S215N 0.16 tolerated(0.09) benign(0.102) TCGA-86-7954-01 5 16477806 16477806 G C FAM134B Nonsense_Mutation p.S322* 0.05 TCGA-86-7954-01 5 169096305 169096305 A T DOCK2 Silent p.G47G 0.07 TCGA-86-7954-01 5 169461502 169461502 G T DOCK2 Silent p.R1189R 0.13 TCGA-86-7954-01 5 173380139 173380139 A G CPEB4 Missense_Mutation p.Y609C 0.14 deleterious(0.03) possibly_damaging(0.823) TCGA-86-7954-01 5 176722250 176722250 G T NSD1 Silent p.L2627L 0.06 TCGA-86-7954-01 5 180661251 180661251 G C TRIM41 Missense_Mutation p.E457Q 0.05 tolerated(0.29) benign(0.322) TCGA-86-7954-01 5 23518018 23518018 G T PRDM9 Silent p.V110V 0.05 TCGA-86-7954-01 5 26881336 26881336 C T CDH9 Missense_Mutation p.C760Y 0.07 deleterious(0.02) benign(0.183) TCGA-86-7954-01 5 32088396 32088396 T C PDZD2 Silent p.P1614P 0.23 TCGA-86-7954-01 5 37816214 37816214 C A GDNF Missense_Mutation p.D76Y 0.06 deleterious(0.01) probably_damaging(0.922) TCGA-86-7954-01 5 41058239 41058239 C A MROH2B Nonsense_Mutation p.G228* 0.09 TCGA-86-7954-01 5 45262788 45262788 G A HCN1 Silent p.I636I 0.10 TCGA-86-7954-01 5 63510244 63510244 C A RNF180 Nonsense_Mutation p.S364* 0.13 TCGA-86-7954-01 6 116757051 116757051 G T DSE Missense_Mutation p.G474W 0.35 deleterious(0) probably_damaging(0.998) TCGA-86-7954-01 6 117687261 117687261 C T ROS1 Silent p.Q930Q 0.08 TCGA-86-7954-01 6 151247397 151247397 G A MTHFD1L Missense_Mutation p.D408N 0.13 tolerated(0.46) benign(0.029) TCGA-86-7954-01 6 152563539 152563539 G A SYNE1 Missense_Mutation p.R6577W 0.23 benign(0.022) TCGA-86-7954-01 6 155776017 155776017 C T NOX3 Silent p.L61L 0.11 TCGA-86-7954-01 6 155776209 155776209 C T NOX3 Missense_Mutation p.E35K 0.10 tolerated(0.22) benign(0.219) TCGA-86-7954-01 6 158014145 158014145 G C ZDHHC14 Missense_Mutation p.A178P 0.26 deleterious(0.01) probably_damaging(0.926) TCGA-86-7954-01 6 26428160 26428160 G T BTN2A3P RNA 0.23 TCGA-86-7954-01 6 26431645 26431645 G T BTN2A3P RNA 0.25 TCGA-86-7954-01 6 28269577 28269577 C T PGBD1 Missense_Mutation p.T649I 0.09 deleterious(0.04) benign(0.021) TCGA-86-7954-01 6 33632739 33632739 G T ITPR3 Missense_Mutation p.R414L 0.25 deleterious(0.03) benign(0.142) TCGA-86-7954-01 6 39053762 39053762 C G GLP1R Silent p.P435P 0.07 TCGA-86-7954-01 6 41658524 41658524 C T TFEB Silent p.P115P 0.08 TCGA-86-7954-01 6 53370274 53370274 C T GCLC Silent p.E437E 0.06 TCGA-86-7954-01 6 70861292 70861292 G T COL19A1 Missense_Mutation p.A681S 0.19 tolerated(0.12) probably_damaging(0.997) TCGA-86-7954-01 6 75813501 75813501 C A COL12A1 Missense_Mutation p.R2764I 0.09 probably_damaging(0.999) TCGA-86-7954-01 6 88299660 88299660 G A RARS2 Missense_Mutation p.R6C 0.07 deleterious(0) possibly_damaging(0.79) TCGA-86-7954-01 7 100679759 100679759 G A MUC17 Missense_Mutation p.G1688R 0.12 probably_damaging(0.999) TCGA-86-7954-01 7 103138289 103138289 C A RELN Silent p.L2976L 0.08 TCGA-86-7954-01 7 106545845 106545845 G A PIK3CG 3'UTR 0.10 TCGA-86-7954-01 7 114302233 114302233 G T FOXP2 Missense_Mutation p.K612N 0.09 deleterious(0) benign(0.092) TCGA-86-7954-01 7 1195212 1195212 G A ZFAND2A Silent p.H53H 0.11 TCGA-86-7954-01 7 119915061 119915061 C A KCND2 Silent p.I125I 0.10 TCGA-86-7954-01 7 122342626 122342626 C A RNF148 Missense_Mutation p.G60V 0.29 deleterious(0) probably_damaging(1) TCGA-86-7954-01 7 138602171 138602171 G A KIAA1549 Missense_Mutation p.T734M 0.10 tolerated(0.07) benign(0.032) TCGA-86-7954-01 7 140037109 140037109 C T SLC37A3 Nonsense_Mutation p.W456* 0.08 TCGA-86-7954-01 7 146997363 146997363 C T CNTNAP2 Silent p.G493G 0.20 TCGA-86-7954-01 7 147675022 147675022 C T CNTNAP2 Missense_Mutation p.T775I 0.12 tolerated(0.12) benign(0.031) TCGA-86-7954-01 7 27147556 27147556 G T HOXA3 Missense_Mutation p.A437E 0.09 deleterious(0) possibly_damaging(0.693) TCGA-86-7954-01 7 63809421 63809421 G C ZNF736 Missense_Mutation p.E394Q 0.12 tolerated(0.05) possibly_damaging(0.88) TCGA-86-7954-01 7 70881005 70881005 G T WBSCR17 Missense_Mutation p.Q240H 0.07 deleterious(0.02) benign(0.002) TCGA-86-7954-01 7 72658162 72658162 C A GTF2IRD2P1 RNA 0.16 TCGA-86-7954-01 7 73470724 73470724 G C ELN Missense_Mutation p.G425A 0.24 unknown(0) TCGA-86-7954-01 7 84751195 84751195 T C SEMA3D Missense_Mutation p.K5E 0.18 tolerated_low_confidence(0.1) benign(0) TCGA-86-7954-01 7 96635385 96635385 G A DLX6 Silent p.Q32Q 0.20 TCGA-86-7954-01 7 99250195 99250195 C T CYP3A5 Missense_Mutation p.E412K 0.06 deleterious(0.02) benign(0.079) TCGA-86-7954-01 7 99669784 99669784 G A ZNF3 Missense_Mutation p.S108L 0.09 tolerated(0.22) benign(0.001) TCGA-86-7954-01 8 105503496 105503496 C G LRP12 Missense_Mutation p.R662T 0.09 tolerated(0.19) benign(0.298) TCGA-86-7954-01 8 131922058 131922058 G A ADCY8 Silent p.S512S 0.12 TCGA-86-7954-01 8 13959957 13959957 C A SGCZ Missense_Mutation p.Q224H 0.15 tolerated(1) benign(0.004) TCGA-86-7954-01 8 144124454 144124454 A G C8orf31 Silent p.S12S 0.18 TCGA-86-7954-01 8 144297307 144297307 C G GPIHBP1 Missense_Mutation p.P157A 0.20 tolerated(0.07) possibly_damaging(0.811) TCGA-86-7954-01 8 63659576 63659576 C T NKAIN3 Missense_Mutation p.P120L 0.06 tolerated(0.15) possibly_damaging(0.677) TCGA-86-7954-01 8 77617004 77617004 C G ZFHX4 Missense_Mutation p.F227L 0.21 benign(0.294) TCGA-86-7954-01 8 91643780 91643780 C T TMEM64 Silent p.Q317Q 0.08 TCGA-86-7954-01 8 95850846 95850846 G T INTS8 Missense_Mutation p.Q339H 0.38 deleterious(0.02) possibly_damaging(0.9) TCGA-86-7954-01 9 107367888 107367888 G T OR13C2 Silent p.T7T 0.13 TCGA-86-7954-01 9 125282004 125282004 T C OR1J4 Silent p.N195N 0.12 TCGA-86-7954-01 9 140126205 140126205 G A SLC34A3 Silent p.A17A 0.20 TCGA-86-7954-01 9 32542600 32542600 T A TOPORS Missense_Mutation p.R641S 0.12 tolerated_low_confidence(0.07) unknown(0) TCGA-86-7954-01 9 43818101 43818101 C A CNTNAP3B Missense_Mutation p.H330N 0.17 deleterious(0.05) benign(0.111) TCGA-86-7954-01 9 80943085 80943085 T C PSAT1 Silent p.L330L 0.09 TCGA-86-7954-01 X 100542529 100542529 C T TAF7L Missense_Mutation p.M87I 0.15 deleterious(0) possibly_damaging(0.907) TCGA-86-7954-01 X 100911977 100911977 C A ARMCX2 Missense_Mutation p.A200S 0.15 deleterious_low_confidence(0.05) benign(0.017) TCGA-86-7954-01 X 102564744 102564744 C A BEX2 Missense_Mutation p.R86M 0.06 deleterious(0) probably_damaging(0.987) TCGA-86-7954-01 X 107554031 107554031 C T COL4A6 Missense_Mutation p.G32R 0.10 unknown(0) TCGA-86-7954-01 X 109246960 109246960 C T TMEM164 5'UTR 0.13 TCGA-86-7954-01 X 110494264 110494264 T C CAPN6 Missense_Mutation p.I347V 0.09 tolerated(0.37) benign(0) TCGA-86-7954-01 X 120008755 120008755 G T CT47B1 Missense_Mutation p.P257H 0.14 deleterious(0.01) unknown(0) TCGA-86-7954-01 X 120008756 120008756 G T CT47B1 Missense_Mutation p.P257T 0.14 tolerated(0.21) unknown(0) TCGA-86-7954-01 X 122532604 122532604 C A GRIA3 Missense_Mutation p.P344T 0.15 tolerated(0.07) benign(0.024) TCGA-86-7954-01 X 122747261 122747261 C A THOC2 Missense_Mutation p.G1556C 0.12 deleterious_low_confidence(0.01) benign(0.374) TCGA-86-7954-01 X 122757749 122757749 A T THOC2 Missense_Mutation p.L1131H 0.07 deleterious(0) probably_damaging(0.99) TCGA-86-7954-01 X 123519792 123519792 C A TENM1 Silent p.V1937V 0.19 TCGA-86-7954-01 X 125298774 125298774 G A DCAF12L2 Silent p.R378R 0.04 TCGA-86-7954-01 X 12817442 12817442 C A PRPS2 Missense_Mutation p.A80E 0.09 deleterious(0) probably_damaging(0.95) TCGA-86-7954-01 X 128914059 128914059 C A SASH3 5'UTR 0.06 TCGA-86-7954-01 X 129474255 129474255 G T SLC25A14 Translation_Start_Site p.M1? 0.10 deleterious_low_confidence(0) benign(0.001) TCGA-86-7954-01 X 129771342 129771342 C A ENOX2 Missense_Mutation p.S420I 0.07 deleterious(0) probably_damaging(0.997) TCGA-86-7954-01 X 151303999 151303999 G A MAGEA10 Silent p.L32L 0.04 TCGA-86-7954-01 X 155125334 155125334 C T VAMP7 Silent p.I65I 0.11 TCGA-86-7954-01 X 155239558 155239558 C T IL9R Silent p.P350P 0.06 TCGA-86-7954-01 X 19983755 19983755 A C CXorf23 Nonsense_Mutation p.Y227* 0.09 TCGA-86-7954-01 X 21670456 21670456 A C CNKSR2 Missense_Mutation p.K974N 0.06 tolerated(0.07) benign(0.015) TCGA-86-7954-01 X 30322938 30322938 C A NR0B1 Missense_Mutation p.V391L 0.23 tolerated(1) benign(0.004) TCGA-86-7954-01 X 31496475 31496475 C G DMD Missense_Mutation p.E2895D 0.18 benign(0.388) TCGA-86-7954-01 X 32503111 32503111 C A DMD Missense_Mutation p.D910Y 0.06 probably_damaging(0.994) TCGA-86-7954-01 X 46618270 46618270 C G SLC9A7 Missense_Mutation p.E65D 0.70 tolerated(0.25) benign(0.217) TCGA-86-7954-01 X 49768168 49768168 C A CLCN5 Intron 0.17 TCGA-86-7954-01 X 53283712 53283712 C A IQSEC2 Missense_Mutation p.Q467H 0.10 deleterious(0) probably_damaging(0.952) TCGA-86-7954-01 X 69459684 69459684 C A AWAT1 Missense_Mutation p.F244L 0.16 tolerated(0.14) probably_damaging(0.998) TCGA-86-7954-01 X 70348217 70348217 G A MED12 Missense_Mutation p.G1094E 0.19 probably_damaging(1) TCGA-86-7954-01 X 71840620 71840620 C G PHKA1 Missense_Mutation p.D698H 0.09 deleterious(0.03) benign(0) TCGA-86-7954-01 X 73046437 73046437 A T XIST RNA 0.17 TCGA-86-7954-01 X 76890157 76890157 C A ATRX Silent p.V1579V 0.15 TCGA-86-7954-01 X 77268489 77268489 G A ATP7A Silent p.L762L 0.07 TCGA-86-7954-01 X 79932311 79932311 T G BRWD3 Missense_Mutation p.M1736L 0.09 tolerated_low_confidence(1) unknown(0) TCGA-86-7954-01 X 80375302 80375302 A C HMGN5 Silent p.G10G 0.07 TCGA-86-7954-01 X 80532613 80532613 C A SH3BGRL Missense_Mutation p.P59Q 0.05 deleterious(0) probably_damaging(1) TCGA-86-7954-01 X 84600995 84600995 G T POF1B Silent p.V198V 0.06 TCGA-86-7954-01 X 85969643 85969643 C T DACH2 Missense_Mutation p.H342Y 0.12 deleterious(0) probably_damaging(0.968) TCGA-86-7954-01 X 91133302 91133302 C A PCDH11X Missense_Mutation p.S688Y 0.06 deleterious(0) probably_damaging(0.981) TCGA-86-7954-01 X 9862786 9862786 C G SHROOM2 Missense_Mutation p.P280A 0.08 deleterious(0.04) probably_damaging(0.934) TCGA-86-7954-01 X 99596916 99596916 G A PCDH19 Nonsense_Mutation p.Q945* 0.10 TCGA-86-7955-01 10 106737182 106737182 C G SORCS3 Missense_Mutation p.F295L 0.43 deleterious(0) probably_damaging(0.915) TCGA-86-7955-01 10 1118122 1118122 G T WDR37 Silent p.S9S 0.34 TCGA-86-7955-01 10 119015131 119015131 C G SLC18A2 Silent p.T286T 0.62 TCGA-86-7955-01 10 25464537 25464537 G C GPR158 Missense_Mutation p.R63P 0.52 tolerated(0.2) possibly_damaging(0.578) TCGA-86-7955-01 10 26432416 26432416 G T MYO3A Nonsense_Mutation p.E768* 0.31 TCGA-86-7955-01 10 29581597 29581597 G T LYZL1 Missense_Mutation p.A143S 0.53 tolerated(0.99) benign(0.095) TCGA-86-7955-01 10 55569237 55569237 C T PCDH15 Missense_Mutation p.V459I 0.34 deleterious_low_confidence(0.02) unknown(0) TCGA-86-7955-01 10 70513691 70513691 T A CCAR1 Missense_Mutation p.W401R 0.68 deleterious(0) probably_damaging(0.969) TCGA-86-7955-01 10 70513692 70513692 G T CCAR1 Missense_Mutation p.W401L 0.67 deleterious(0) possibly_damaging(0.901) TCGA-86-7955-01 11 100226913 100226913 T A CNTN5 Missense_Mutation p.L1089M 0.11 tolerated(0.1) benign(0.012) TCGA-86-7955-01 11 102401431 102401431 T A MMP7 Translation_Start_Site p.M1? 0.07 tolerated(0.06) benign(0.006) TCGA-86-7955-01 11 103780385 103780385 G T PDGFD 3'UTR 0.26 TCGA-86-7955-01 11 110036212 110036212 A G ZC3H12C Missense_Mutation p.Q801R 0.56 tolerated(0.28) benign(0.158) TCGA-86-7955-01 11 111225223 111225223 C T POU2AF1 Silent p.P178P 0.28 TCGA-86-7955-01 11 113934379 113934379 G A ZBTB16 Silent p.L119L 0.75 TCGA-86-7955-01 11 114442043 114442043 G T NXPE4 Silent p.R418R 0.67 TCGA-86-7955-01 11 119181112 119181112 C G MCAM Missense_Mutation p.E620Q 0.19 deleterious(0) probably_damaging(0.998) TCGA-86-7955-01 11 119215633 119215633 C A MFRP Silent p.V241V 0.78 TCGA-86-7955-01 11 132082041 132082041 G T NTM Missense_Mutation p.A176S 0.06 tolerated(0.09) benign(0.036) TCGA-86-7955-01 11 13380049 13380049 C A ARNTL Missense_Mutation p.S97Y 0.74 deleterious(0) possibly_damaging(0.785) TCGA-86-7955-01 11 1775105 1775105 G A CTSD Silent p.S333S 0.61 TCGA-86-7955-01 11 30033924 30033924 C A KCNA4 Missense_Mutation p.S101I 0.35 tolerated_low_confidence(0.06) benign(0.403) TCGA-86-7955-01 11 32410625 32410625 G T WT1 Silent p.T511T 0.35 TCGA-86-7955-01 11 32781805 32781805 C T CCDC73 Splice_Site 0.31 TCGA-86-7955-01 11 35641239 35641239 T A FJX1 Missense_Mutation p.M352K 0.43 tolerated(0.39) possibly_damaging(0.76) TCGA-86-7955-01 11 45891234 45891234 A G CRY2 Missense_Mutation p.T375A 0.40 deleterious(0) probably_damaging(1) TCGA-86-7955-01 11 49227631 49227631 T C FOLH1 Missense_Mutation p.K71R 0.29 tolerated(0.48) benign(0.053) TCGA-86-7955-01 11 49831420 49831420 T A RP11-707M1.1 RNA 0.37 TCGA-86-7955-01 11 49831437 49831437 A G RP11-707M1.1 RNA 0.35 TCGA-86-7955-01 11 55032731 55032731 T C TRIM48 Missense_Mutation p.S134P 0.13 deleterious(0.02) possibly_damaging(0.622) TCGA-86-7955-01 11 55135632 55135632 G T OR4A15 Silent p.L91L 0.45 TCGA-86-7955-01 11 56237443 56237443 A G OR5M3 Silent p.C177C 0.42 TCGA-86-7955-01 11 59211538 59211538 G C OR5A1 Missense_Mutation p.E299D 0.37 tolerated(0.15) benign(0.044) TCGA-86-7955-01 11 61081147 61081147 C G DDB1 Missense_Mutation p.L631F 0.69 deleterious(0) probably_damaging(0.992) TCGA-86-7955-01 11 65147341 65147341 C T SLC25A45 Silent p.E50E 0.15 TCGA-86-7955-01 11 65629734 65629734 C A MUS81 Missense_Mutation p.A168D 0.13 tolerated(0.17) benign(0.002) TCGA-86-7955-01 11 67288576 67288576 C G CABP2 Missense_Mutation p.C100S 0.58 tolerated(0.59) benign(0.222) TCGA-86-7955-01 11 68213965 68213965 A T LRP5 Missense_Mutation p.Y1517F 0.70 tolerated(0.1) possibly_damaging(0.723) TCGA-86-7955-01 11 69482327 69482327 T C ORAOV1 Missense_Mutation p.D125G 0.11 deleterious(0.03) benign(0.039) TCGA-86-7955-01 11 76956338 76956338 G A GDPD4 Silent p.I358I 0.10 TCGA-86-7955-01 11 7982002 7982002 A G NLRP10 Missense_Mutation p.M386T 0.69 tolerated(0.52) benign(0.015) TCGA-86-7955-01 11 83673935 83673935 A T DLG2 Missense_Mutation p.Y445N 0.16 tolerated(0.21) possibly_damaging(0.862) TCGA-86-7955-01 11 84028152 84028152 G T DLG2 Intron 0.72 TCGA-86-7955-01 11 85437291 85437291 T A SYTL2 Missense_Mutation p.E70V 0.69 deleterious_low_confidence(0) possibly_damaging(0.483) TCGA-86-7955-01 11 88300969 88300969 C A GRM5 Missense_Mutation p.G628C 0.19 tolerated(0.26) probably_damaging(1) TCGA-86-7955-01 11 89133480 89133480 C G NOX4 Missense_Mutation p.S305T 0.14 deleterious(0.01) benign(0.371) TCGA-86-7955-01 12 102589974 102589974 G T PARPBP Missense_Mutation p.G549C 0.25 tolerated(0.1) benign(0.06) TCGA-86-7955-01 12 103988209 103988209 C T STAB2 Silent p.L84L 0.52 TCGA-86-7955-01 12 108051465 108051465 C T BTBD11 Silent p.H1095H 0.12 TCGA-86-7955-01 12 113537714 113537715 - C RASAL1 3'UTR 0.28 TCGA-86-7955-01 12 113821954 113821954 G T PLBD2 Missense_Mutation p.W334C 0.56 deleterious(0) probably_damaging(0.997) TCGA-86-7955-01 12 124882717 124882717 C G NCOR2 Missense_Mutation p.E608D 0.58 unknown(0) TCGA-86-7955-01 12 132505712 132505712 G T EP400 Silent p.P1512P 0.28 TCGA-86-7955-01 12 1965176 1965176 A C CACNA2D4 Splice_Site p.X718_splice 0.08 TCGA-86-7955-01 12 4543450 4543450 G T FGF6 Nonsense_Mutation p.Y186* 0.52 TCGA-86-7955-01 12 5154975 5154975 G C KCNA5 Silent p.R554R 0.70 TCGA-86-7955-01 12 53069036 53069036 A T KRT1 Missense_Mutation p.S626T 0.29 tolerated_low_confidence(1) unknown(0) TCGA-86-7955-01 12 53566378 53566378 G A CSAD Missense_Mutation p.R88W 0.19 deleterious(0.01) probably_damaging(0.931) TCGA-86-7955-01 12 663068 663068 C G B4GALNT3 Missense_Mutation p.S660C 0.65 deleterious(0) probably_damaging(0.998) TCGA-86-7955-01 12 72893350 72893350 G T TRHDE Missense_Mutation p.V508L 0.31 tolerated(1) benign(0.419) TCGA-86-7955-01 12 72936068 72936068 T C TRHDE Intron 0.24 TCGA-86-7955-01 12 75437007 75437007 G A KCNC2 Nonsense_Mutation p.R599* 0.33 TCGA-86-7955-01 12 75444377 75444377 G C KCNC2 Missense_Mutation p.P470A 0.43 deleterious(0) probably_damaging(0.991) TCGA-86-7955-01 12 7639097 7639097 G T CD163 Nonsense_Mutation p.S819* 0.47 TCGA-86-7955-01 12 78225255 78225255 G T NAV3 Missense_Mutation p.G5V 0.37 tolerated_low_confidence(0.26) probably_damaging(0.999) TCGA-86-7955-01 12 81627150 81627150 C G ACSS3 Missense_Mutation p.A540G 0.33 tolerated(0.14) possibly_damaging(0.901) TCGA-86-7955-01 12 85260840 85260840 G T SLC6A15 Missense_Mutation p.A543D 0.30 deleterious(0) possibly_damaging(0.862) TCGA-86-7955-01 12 86383241 86383241 G A MGAT4C Silent p.F28F 0.58 TCGA-86-7955-01 12 89917073 89917073 C A GALNT4 Silent p.R418R 0.35 TCGA-86-7955-01 12 89917074 89917074 C A GALNT4 Missense_Mutation p.R418L 0.35 deleterious(0.01) benign(0.187) TCGA-86-7955-01 13 103718317 103718317 G T SLC10A2 Missense_Mutation p.L95I 0.76 tolerated(0.91) benign(0.001) TCGA-86-7955-01 13 33635130 33635130 G T KL Missense_Mutation p.W638C 0.75 deleterious(0) probably_damaging(0.99) TCGA-86-7955-01 13 39586309 39586309 C A PROSER1 Missense_Mutation p.G875C 0.60 deleterious(0) probably_damaging(1) TCGA-86-7955-01 13 41704875 41704875 C T KBTBD6 Silent p.R591R 0.67 TCGA-86-7955-01 13 46619597 46619597 T C ZC3H13 Missense_Mutation p.I16V 0.69 unknown(0) TCGA-86-7955-01 13 77779485 77779485 G A MYCBP2 Missense_Mutation p.S1212L 0.59 probably_damaging(1) TCGA-86-7955-01 14 20388777 20388777 C A OR4K5 Silent p.S4S 0.23 TCGA-86-7955-01 14 20482814 20482814 C A OR4K14 Missense_Mutation p.C180F 0.40 deleterious(0) probably_damaging(1) TCGA-86-7955-01 14 23866453 23866453 T A MYH6 Missense_Mutation p.K659M 0.32 deleterious(0) probably_damaging(0.94) TCGA-86-7955-01 14 24807659 24807659 G A RIPK3 Missense_Mutation p.R196W 0.40 tolerated(0.07) benign(0.002) TCGA-86-7955-01 14 24911632 24911632 C G SDR39U1 Missense_Mutation p.A15P 0.19 tolerated(0.24) possibly_damaging(0.906) TCGA-86-7955-01 14 38281595 38281595 G A TTC6 Missense_Mutation p.G1549E 0.23 deleterious(0) probably_damaging(1) TCGA-86-7955-01 14 39646860 39646860 G A PNN Missense_Mutation p.D131N 0.13 tolerated(0.05) possibly_damaging(0.468) TCGA-86-7955-01 14 50101770 50101770 C T DNAAF2 Missense_Mutation p.R33Q 0.35 deleterious(0.01) probably_damaging(0.992) TCGA-86-7955-01 14 58785450 58785450 A T ARID4A Missense_Mutation p.T126S 0.70 deleterious(0.02) probably_damaging(0.997) TCGA-86-7955-01 14 81609871 81609871 C A TSHR Missense_Mutation p.T490K 0.74 deleterious(0) probably_damaging(1) TCGA-86-7955-01 14 94732176 94732176 A T PPP4R4 Missense_Mutation p.N777I 0.76 deleterious_low_confidence(0.01) benign(0.353) TCGA-86-7955-01 15 101569284 101569284 T G LRRK1 Missense_Mutation p.I937S 0.24 deleterious(0) possibly_damaging(0.501) TCGA-86-7955-01 15 20169986 20169986 C A IGHV1OR15-9 Missense_Mutation p.G96C 0.41 deleterious(0) possibly_damaging(0.5) TCGA-86-7955-01 15 20495399 20495399 C T CHEK2P2 RNA 0.12 TCGA-86-7955-01 15 20495407 20495407 G A CHEK2P2 RNA 0.13 TCGA-86-7955-01 15 23889220 23889220 C A MAGEL2 Nonsense_Mutation p.E621* 0.29 TCGA-86-7955-01 15 26866525 26866525 C A GABRB3 Nonsense_Mutation p.G133* 0.32 TCGA-86-7955-01 15 37184625 37184625 C A MEIS2 Missense_Mutation p.G395C 0.39 deleterious_low_confidence(0) benign(0.345) TCGA-86-7955-01 15 41347502 41347502 C A INO80 Nonsense_Mutation p.E711* 0.10 TCGA-86-7955-01 15 41988653 41988653 A G MGA Missense_Mutation p.K482R 0.35 deleterious(0) probably_damaging(0.99) TCGA-86-7955-01 15 42041930 42041930 G C MGA Missense_Mutation p.C2042S 0.37 tolerated_low_confidence(0.88) benign(0) TCGA-86-7955-01 15 42115799 42115799 G C MAPKBP1 Missense_Mutation p.K1257N 0.30 deleterious(0) benign(0.244) TCGA-86-7955-01 15 43641114 43641115 - A ADAL Frame_Shift_Ins p.E191Rfs*11 0.30 TCGA-86-7955-01 15 52609325 52609325 G T MYO5A Missense_Mutation p.Q1752K 0.49 tolerated(0.11) probably_damaging(0.953) TCGA-86-7955-01 15 55929461 55929461 C G PRTG Missense_Mutation p.D844H 0.38 tolerated(0.11) benign(0.178) TCGA-86-7955-01 15 68623343 68623343 G T ITGA11 Missense_Mutation p.A626D 0.39 deleterious(0) benign(0.236) TCGA-86-7955-01 15 82512557 82512557 C T EFTUD1 Missense_Mutation p.E436K 0.05 deleterious(0.02) benign(0.367) TCGA-86-7955-01 15 86265490 86265490 G T AKAP13 Missense_Mutation p.R2140S 0.31 deleterious(0) probably_damaging(0.996) TCGA-86-7955-01 15 89401209 89401209 A G ACAN Missense_Mutation p.Q1798R 0.34 tolerated(0.17) probably_damaging(0.995) TCGA-86-7955-01 16 20043464 20043464 G C GPR139 Missense_Mutation p.R219G 0.39 tolerated(0.09) probably_damaging(0.997) TCGA-86-7955-01 16 23713493 23713493 C A ERN2 Missense_Mutation p.A443S 0.37 tolerated(0.71) benign(0.076) TCGA-86-7955-01 16 24580271 24580271 C T RBBP6 Missense_Mutation p.H754Y 0.18 deleterious_low_confidence(0) unknown(0) TCGA-86-7955-01 16 24835027 24835027 G T TNRC6A Missense_Mutation p.G1930C 0.45 deleterious(0) probably_damaging(1) TCGA-86-7955-01 16 28606784 28606784 C T SULT1A2 Silent p.G92G 0.39 TCGA-86-7955-01 16 30767819 30767819 G A PHKG2 Missense_Mutation p.R260H 0.05 tolerated(0.5) benign(0.081) TCGA-86-7955-01 16 30770380 30770380 G A C16orf93 Missense_Mutation p.P257L 0.22 tolerated(0.08) benign(0.005) TCGA-86-7955-01 16 32265036 32265036 G T TP53TG3D Missense_Mutation p.S121I 0.23 tolerated_low_confidence(0.15) benign(0) TCGA-86-7955-01 16 32265037 32265037 G T TP53TG3D Splice_Site p.X121_splice 0.24 TCGA-86-7955-01 16 46755046 46755046 C A MYLK3 Silent p.G658G 0.50 TCGA-86-7955-01 16 47117638 47117638 C T NETO2 Missense_Mutation p.V358I 0.25 tolerated(0.15) probably_damaging(0.997) TCGA-86-7955-01 16 55732407 55732407 G T SLC6A2 Silent p.L472L 0.26 TCGA-86-7955-01 16 61823326 61823326 C A CDH8 Silent p.G446G 0.24 TCGA-86-7955-01 17 17697569 17697569 C G RAI1 Missense_Mutation p.T436R 0.62 deleterious(0) probably_damaging(0.999) TCGA-86-7955-01 17 19566719 19566724 AATAGT - ALDH3A2 In_Frame_Del p.I339_V340del 0.65 TCGA-86-7955-01 17 34432753 34432753 T C CCL4 3'UTR 0.54 TCGA-86-7955-01 17 38991250 38991250 C G TMEM99 Missense_Mutation p.A161G 0.26 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-86-7955-01 17 44061185 44061185 G C MAPT Missense_Mutation p.G339R 0.45 deleterious(0.02) benign(0.128) TCGA-86-7955-01 17 57287713 57287713 G T SMG8 Nonsense_Mutation p.E101* 0.41 TCGA-86-7955-01 17 61833645 61833645 G A CCDC47 Silent p.I301I 0.32 TCGA-86-7955-01 17 61911586 61911586 T G SMARCD2 Missense_Mutation p.N342H 0.37 tolerated(1) possibly_damaging(0.788) TCGA-86-7955-01 17 62818422 62818422 C A RNU7-115P 3'Flank 0.37 TCGA-86-7955-01 17 67045515 67045515 A G ABCA9 Silent p.F71F 0.39 TCGA-86-7955-01 17 67257396 67257396 G A ABCA5 Missense_Mutation p.A1145V 0.48 tolerated(0.23) possibly_damaging(0.858) TCGA-86-7955-01 17 71431739 71431739 C T SDK2 Missense_Mutation p.V349M 0.33 deleterious(0.05) possibly_damaging(0.493) TCGA-86-7955-01 17 72518979 72518979 G A CD300LB Silent p.A205A 0.40 TCGA-86-7955-01 17 72878809 72878809 G T FADS6 Missense_Mutation p.T130K 0.43 tolerated(0.81) benign(0.015) TCGA-86-7955-01 17 78069164 78069164 C A CCDC40 Missense_Mutation p.R979S 0.32 tolerated(1) benign(0.002) TCGA-86-7955-01 18 25583079 25583079 T C CDH2 Missense_Mutation p.N301S 0.34 deleterious(0.01) possibly_damaging(0.903) TCGA-86-7955-01 18 2740725 2740725 G A SMCHD1 Missense_Mutation p.G1180E 0.42 deleterious(0.01) probably_damaging(1) TCGA-86-7955-01 18 30092249 30092249 C A WBP11P1 RNA 0.38 TCGA-86-7955-01 18 30926280 30926280 C A CCDC178 Nonsense_Mutation p.E185* 0.40 TCGA-86-7955-01 18 50918122 50918122 G T DCC Missense_Mutation p.Q851H 0.39 deleterious(0) probably_damaging(0.941) TCGA-86-7955-01 18 50918123 50918123 G T DCC Missense_Mutation p.A852S 0.39 deleterious(0) probably_damaging(0.957) TCGA-86-7955-01 18 55144018 55144018 A G ONECUT2 3'UTR 0.75 TCGA-86-7955-01 19 15905490 15905490 G A OR10H5 Missense_Mutation p.C211Y 0.52 deleterious(0.01) probably_damaging(0.996) TCGA-86-7955-01 19 16000319 16000319 G T CYP4F2 Missense_Mutation p.L278I 0.75 deleterious(0.05) possibly_damaging(0.739) TCGA-86-7955-01 19 18893661 18893661 G T COMP 3'UTR 0.47 TCGA-86-7955-01 19 19359518 19359518 G T NCAN Missense_Mutation p.G1216V 0.12 deleterious(0) probably_damaging(0.954) TCGA-86-7955-01 19 22363782 22363782 A G ZNF676 Missense_Mutation p.I246T 0.20 deleterious(0.03) benign(0.112) TCGA-86-7955-01 19 41105433 41105433 A G LTBP4 Silent p.R104R 0.67 TCGA-86-7955-01 19 4318437 4318437 G T FSD1 Missense_Mutation p.Q298H 0.64 tolerated(0.19) probably_damaging(0.942) TCGA-86-7955-01 19 4318438 4318438 G T FSD1 Missense_Mutation p.D299Y 0.62 deleterious(0) probably_damaging(0.937) TCGA-86-7955-01 19 47876148 47876148 A T DHX34 Missense_Mutation p.T644S 0.93 deleterious(0.03) possibly_damaging(0.665) TCGA-86-7955-01 19 50983931 50983931 G T EMC10 Missense_Mutation p.G166W 0.53 deleterious(0) probably_damaging(1) TCGA-86-7955-01 19 51274894 51274894 C T GPR32 Missense_Mutation p.S346L 0.47 deleterious(0.03) benign(0.058) TCGA-86-7955-01 19 54759183 54759183 C A LILRB5 Silent p.S306S 0.63 TCGA-86-7955-01 19 56539519 56539519 C T NLRP5 Silent p.L640L 0.67 TCGA-86-7955-01 19 57061902 57061902 T G ZFP28 Missense_Mutation p.L276V 0.76 tolerated(1) benign(0.003) TCGA-86-7955-01 19 7712319 7712319 G T STXBP2 Missense_Mutation p.G540C 0.76 deleterious(0) probably_damaging(0.99) TCGA-86-7955-01 1 110950492 110950492 G T LAMTOR5 5'UTR 0.37 TCGA-86-7955-01 1 113235478 113235478 G A MOV10 Missense_Mutation p.R356Q 0.67 deleterious(0.03) benign(0.048) TCGA-86-7955-01 1 114400255 114400255 A T PTPN22 Intron 0.26 TCGA-86-7955-01 1 118495150 118495150 G T WDR3 Splice_Site p.X673_splice 0.38 TCGA-86-7955-01 1 118582041 118582041 C - SPAG17 Frame_Shift_Del p.V1065* 0.17 TCGA-86-7955-01 1 12954977 12954977 C A PRAMEF10 Silent p.V102V 0.23 TCGA-86-7955-01 1 145587382 145587382 C A NUDT17 Missense_Mutation p.G233V 0.43 tolerated(0.3) benign(0.047) TCGA-86-7955-01 1 148756486 148756486 G T NBPF16 Missense_Mutation p.Q605H 0.18 deleterious(0) benign(0.147) TCGA-86-7955-01 1 148756487 148756487 G T NBPF16 Missense_Mutation p.D606Y 0.18 deleterious(0.03) benign(0.074) TCGA-86-7955-01 1 149903171 149903171 C - MTMR11 Frame_Shift_Del p.G424Efs*52 0.31 TCGA-86-7955-01 1 152278724 152278724 C A FLG Missense_Mutation p.G2880W 0.13 probably_damaging(0.961) TCGA-86-7955-01 1 153177225 153177225 T C LELP1 Silent p.T14T 0.30 TCGA-86-7955-01 1 153177226 153177226 G T LELP1 Nonsense_Mutation p.E15* 0.30 TCGA-86-7955-01 1 155448853 155448853 G C ASH1L Missense_Mutation p.R1270G 0.31 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-86-7955-01 1 155451467 155451467 T A ASH1L Silent p.G398G 0.31 TCGA-86-7955-01 1 156106935 156106936 - C LMNA Frame_Shift_Ins p.T510Yfs*42 0.41 TCGA-86-7955-01 1 156897534 156897534 C T LRRC71 Silent p.L278L 0.38 TCGA-86-7955-01 1 15736746 15736746 G T EFHD2 Missense_Mutation p.Q93H 0.15 deleterious(0.04) probably_damaging(0.992) TCGA-86-7955-01 1 158735533 158735533 C A OR6N1 3'UTR 0.03 TCGA-86-7955-01 1 161021161 161021161 G A ARHGAP30 Missense_Mutation p.R455W 0.07 deleterious(0) probably_damaging(0.998) TCGA-86-7955-01 1 175323591 175323591 C A TNR Silent p.T1106T 0.77 TCGA-86-7955-01 1 176671783 176671783 G C PAPPA2 Missense_Mutation p.A1093P 0.21 deleterious(0.02) probably_damaging(0.921) TCGA-86-7955-01 1 176671858 176671858 G T PAPPA2 Missense_Mutation p.G1118W 0.15 deleterious(0) probably_damaging(1) TCGA-86-7955-01 1 17765020 17765020 T C RCC2 Splice_Site 0.48 TCGA-86-7955-01 1 185992227 185992227 A C HMCN1 Silent p.T1897T 0.86 TCGA-86-7955-01 1 19595799 19595799 A G AKR7L Intron 0.48 TCGA-86-7955-01 1 19632559 19632559 C T AKR7A2 Missense_Mutation p.V291M 0.48 tolerated(1) benign(0.006) TCGA-86-7955-01 1 203138423 203138423 G T MYBPH Silent p.G396G 0.79 TCGA-86-7955-01 1 203144904 203144904 C G MYBPH 5'UTR 0.88 TCGA-86-7955-01 1 205308387 205308387 C G KLHDC8A Missense_Mutation p.R231P 0.77 deleterious(0.02) possibly_damaging(0.663) TCGA-86-7955-01 1 207793405 207793405 C A CR1 Missense_Mutation p.T2416N 0.10 deleterious(0.03) benign(0.401) TCGA-86-7955-01 1 21133930 21133930 T C EIF4G3 Missense_Mutation p.Y1553C 0.66 deleterious(0) probably_damaging(1) TCGA-86-7955-01 1 214557235 214557235 C T PTPN14 Missense_Mutation p.A655T 0.27 tolerated(0.23) possibly_damaging(0.744) TCGA-86-7955-01 1 221057558 221057558 C A HLX Silent p.R327R 0.83 TCGA-86-7955-01 1 228345508 228345508 C A GJC2 Missense_Mutation p.H17N 0.91 deleterious(0) probably_damaging(0.992) TCGA-86-7955-01 1 238053933 238053933 C T ZP4 Translation_Start_Site p.M1? 0.65 deleterious_low_confidence(0.02) possibly_damaging(0.827) TCGA-86-7955-01 1 27190105 27190105 G A SFN Silent p.V134V 0.25 TCGA-86-7955-01 1 27238520 27238520 C T NR0B2 Nonsense_Mutation p.W197* 0.38 TCGA-86-7955-01 1 41978682 41978682 C A HIVEP3 Missense_Mutation p.R2070S 0.68 benign(0.004) TCGA-86-7955-01 1 42898847 42898847 G A ZMYND12 Silent p.V314V 0.22 TCGA-86-7955-01 1 47037739 47037739 G C MKNK1 Silent p.T163T 0.24 TCGA-86-7955-01 1 53544070 53544070 C T PODN Silent p.S344S 0.26 TCGA-86-7955-01 1 5967264 5967264 C A NPHP4 Missense_Mutation p.A508S 0.23 tolerated(0.42) benign(0.021) TCGA-86-7955-01 1 65874376 65874376 C T DNAJC6 Silent p.F848F 0.35 TCGA-86-7955-01 1 91779021 91779021 G C HFM1 Silent p.V1092V 0.13 TCGA-86-7955-01 20 1162210 1162210 T A TMEM74B Missense_Mutation p.E18V 0.35 deleterious_low_confidence(0) possibly_damaging(0.836) TCGA-86-7955-01 20 18470621 18470621 G A RBBP9 Silent p.R116R 0.38 TCGA-86-7955-01 20 18470627 18470627 G A RBBP9 Silent p.F114F 0.36 TCGA-86-7955-01 20 23066782 23066782 G T CD93 Silent p.T16T 0.54 TCGA-86-7955-01 20 29847301 29847301 T C DEFB115 Missense_Mutation p.C45R 0.21 deleterious(0) probably_damaging(0.955) TCGA-86-7955-01 20 31996554 31996554 C T SNTA1 Missense_Mutation p.G460S 0.62 deleterious(0.02) probably_damaging(0.997) TCGA-86-7955-01 20 33028041 33028041 C G ITCH Missense_Mutation p.T295R 0.62 tolerated(0.24) benign(0.004) TCGA-86-7955-01 20 34025349 34025349 C A GDF5 Silent p.R120R 0.10 TCGA-86-7955-01 20 34025350 34025350 C A GDF5 Missense_Mutation p.R120L 0.10 deleterious(0.02) benign(0.033) TCGA-86-7955-01 20 476447 476447 C A CSNK2A1 Splice_Site p.X143_splice 0.54 TCGA-86-7955-01 20 48503372 48503372 G C SLC9A8 Missense_Mutation p.K541N 0.21 tolerated(0.08) benign(0.091) TCGA-86-7955-01 20 50048864 50048864 C A NFATC2 Missense_Mutation p.R821L 0.71 tolerated(0.27) probably_damaging(0.926) TCGA-86-7955-01 20 60904863 60904863 C T LAMA5 Silent p.V1363V 0.22 TCGA-86-7955-01 20 61468500 61468500 G T COL9A3 Missense_Mutation p.G557C 0.69 deleterious(0) probably_damaging(1) TCGA-86-7955-01 20 9416281 9416281 A T PLCB4 Missense_Mutation p.M855L 0.33 tolerated(0.5) benign(0.006) TCGA-86-7955-01 21 15746400 15746400 C G HSPA13 Missense_Mutation p.R318S 0.53 tolerated(0.73) benign(0.001) TCGA-86-7955-01 21 32595879 32595879 T A TIAM1 Missense_Mutation p.Q613L 0.41 deleterious(0) benign(0.007) TCGA-86-7955-01 21 33956574 33956574 C T TCP10L Missense_Mutation p.G14D 0.42 tolerated_low_confidence(0.19) benign(0.067) TCGA-86-7955-01 21 45987698 45987698 T A TSPEAR Missense_Mutation p.T92S 0.09 deleterious(0) possibly_damaging(0.853) TCGA-86-7955-01 22 36649219 36649219 C T APOL1 5'UTR 0.86 TCGA-86-7955-01 22 44237733 44237733 G C SULT4A1 Missense_Mutation p.D83E 0.78 tolerated(0.53) benign(0.048) TCGA-86-7955-01 22 46653646 46653648 ATA - PKDREJ In_Frame_Del p.Y1858del 0.86 TCGA-86-7955-01 2 107460300 107460300 A G ST6GAL2 Missense_Mutation p.F45S 0.43 possibly_damaging(0.719) TCGA-86-7955-01 2 109098746 109098746 G A GCC2 Missense_Mutation p.E1062K 0.23 tolerated(0.1) benign(0.123) TCGA-86-7955-01 2 109098878 109098878 G C GCC2 Missense_Mutation p.E1106Q 0.39 deleterious(0) benign(0.172) TCGA-86-7955-01 2 130833055 130833055 T G POTEF Missense_Mutation p.T664P 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.622) TCGA-86-7955-01 2 130931133 130931133 C A SMPD4 Missense_Mutation p.V114L 0.18 tolerated(0.34) possibly_damaging(0.753) TCGA-86-7955-01 2 131520083 131520083 C T AMER3 Silent p.I146I 0.21 TCGA-86-7955-01 2 132276728 132276728 G T AC093838.4 RNA 0.20 TCGA-86-7955-01 2 135743890 135743890 G T MAP3K19 Missense_Mutation p.P851H 0.45 tolerated(0.37) possibly_damaging(0.784) TCGA-86-7955-01 2 1457501 1457501 T - TPO Frame_Shift_Del p.L173Rfs*36 0.28 TCGA-86-7955-01 2 168105918 168105918 T - XIRP2 Frame_Shift_Del p.C2673Afs*46 0.14 TCGA-86-7955-01 2 168726004 168726004 T A B3GALT1 Missense_Mutation p.L152H 0.49 deleterious(0) probably_damaging(1) TCGA-86-7955-01 2 171260906 171260906 G T MYO3B Silent p.L809L 0.45 TCGA-86-7955-01 2 179594462 179594462 C A TTN Missense_Mutation p.S6173I 0.44 TCGA-86-7955-01 2 179606021 179606021 G T TTN Missense_Mutation p.T3980N 0.52 TCGA-86-7955-01 2 179641932 179641932 G T TTN Missense_Mutation p.D1586E 0.25 TCGA-86-7955-01 2 183593347 183593347 T C DNAJC10 Missense_Mutation p.S155P 0.62 deleterious(0.01) probably_damaging(0.993) TCGA-86-7955-01 2 185801605 185801605 G T ZNF804A Missense_Mutation p.M494I 0.56 deleterious(0.02) benign(0.029) TCGA-86-7955-01 2 185803636 185803636 C A ZNF804A Silent p.I1171I 0.22 TCGA-86-7955-01 2 1926429 1926429 G T MYT1L Missense_Mutation p.T371K 0.50 deleterious_low_confidence(0.02) possibly_damaging(0.733) TCGA-86-7955-01 2 197172747 197172747 T A HECW2 Missense_Mutation p.T833S 0.29 deleterious(0) probably_damaging(1) TCGA-86-7955-01 2 197183882 197183882 T C HECW2 Missense_Mutation p.S578G 0.25 tolerated_low_confidence(0.28) benign(0) TCGA-86-7955-01 2 200213847 200213847 C A SATB2 Missense_Mutation p.Q250H 0.43 tolerated(0.13) benign(0.004) TCGA-86-7955-01 2 207171010 207171010 T C ZDBF2 Silent p.D586D 0.21 TCGA-86-7955-01 2 207171440 207171440 A C ZDBF2 Missense_Mutation p.N730H 0.29 deleterious(0) probably_damaging(0.924) TCGA-86-7955-01 2 230632191 230632191 C T TRIP12 3'UTR 0.19 TCGA-86-7955-01 2 242814603 242814603 C A CXXC11 Missense_Mutation p.P299Q 0.25 deleterious(0) probably_damaging(0.931) TCGA-86-7955-01 2 24916208 24916208 A G NCOA1 Missense_Mutation p.D267G 0.15 deleterious(0) probably_damaging(0.999) TCGA-86-7955-01 2 26667616 26667616 G A DRC1 Nonsense_Mutation p.W399* 0.28 TCGA-86-7955-01 2 37152290 37152290 A T STRN Missense_Mutation p.V99E 0.05 deleterious(0) possibly_damaging(0.78) TCGA-86-7955-01 2 38812888 38812888 A G HNRNPLL Silent p.S143S 0.44 TCGA-86-7955-01 2 48687257 48687257 G T PPP1R21 Missense_Mutation p.K188N 0.27 tolerated(0.21) benign(0.253) TCGA-86-7955-01 2 48687258 48687258 G T PPP1R21 Nonsense_Mutation p.E189* 0.27 TCGA-86-7955-01 2 50318468 50318468 G T NRXN1 Nonsense_Mutation p.Y1277* 0.37 TCGA-86-7955-01 2 64796266 64796266 G A AFTPH Missense_Mutation p.D710N 0.43 tolerated(0.11) benign(0.03) TCGA-86-7955-01 2 68882524 68882524 G A PROKR1 Missense_Mutation p.S333N 0.30 deleterious(0.01) probably_damaging(0.995) TCGA-86-7955-01 2 69597229 69597229 C T GFPT1 Missense_Mutation p.D43N 0.48 deleterious(0.02) probably_damaging(0.999) TCGA-86-7955-01 2 74274030 74274030 C G TET3 Missense_Mutation p.P194R 0.57 tolerated(0.13) benign(0.194) TCGA-86-7955-01 2 79349999 79349999 G A REG1A Silent p.L118L 0.30 TCGA-86-7955-01 2 89986811 89986811 T C IGKV2D-29 Missense_Mutation p.L31P 0.51 deleterious(0) probably_damaging(0.966) TCGA-86-7955-01 2 97869965 97869965 C G ANKRD36 Missense_Mutation p.A1009G 0.45 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-86-7955-01 3 100328693 100328693 G T GPR128 5'UTR 0.82 TCGA-86-7955-01 3 105269071 105269071 A - ALCAM Frame_Shift_Del p.E492Gfs*4 0.40 TCGA-86-7955-01 3 114070281 114070281 G C ZBTB20 Missense_Mutation p.T215S 0.83 deleterious(0.04) possibly_damaging(0.899) TCGA-86-7955-01 3 121207289 121207289 C A POLQ Missense_Mutation p.D1497Y 0.69 deleterious(0) possibly_damaging(0.646) TCGA-86-7955-01 3 124193534 124193534 G A KALRN Silent p.K1350K 0.74 TCGA-86-7955-01 3 142084003 142084003 C T XRN1 Missense_Mutation p.G1094R 0.82 deleterious(0.03) benign(0.118) TCGA-86-7955-01 3 152880659 152880659 G A RAP2B Silent p.A59A 0.75 TCGA-86-7955-01 3 185882739 185882739 C A DGKG Missense_Mutation p.G722C 0.49 deleterious(0) probably_damaging(1) TCGA-86-7955-01 3 193036809 193036809 C A ATP13A5 Silent p.G668G 0.72 TCGA-86-7955-01 3 193081900 193081900 G T ATP13A5 Missense_Mutation p.T78K 0.04 deleterious(0) probably_damaging(0.96) TCGA-86-7955-01 3 197009570 197009570 T A DLG1 Missense_Mutation p.S100C 0.77 tolerated(0.1) possibly_damaging(0.819) TCGA-86-7955-01 3 33055583 33055583 G A GLB1 Nonsense_Mutation p.Q567* 0.75 TCGA-86-7955-01 3 37366433 37366433 C T GOLGA4 Missense_Mutation p.S1041L 0.79 possibly_damaging(0.856) TCGA-86-7955-01 3 39452635 39452635 C G RPSA Intron 0.81 TCGA-86-7955-01 3 48476460 48476460 C A CCDC51 Nonsense_Mutation p.G27* 0.72 TCGA-86-7955-01 3 49049995 49049995 A G WDR6 Missense_Mutation p.K373R 0.72 tolerated(0.49) benign(0.054) TCGA-86-7955-01 3 52383392 52383392 G A DNAH1 Missense_Mutation p.V828M 0.30 benign(0.004) TCGA-86-7955-01 3 54930919 54930919 G C CACNA2D3 Intron 0.88 TCGA-86-7955-01 3 77572051 77572051 G C ROBO2 Missense_Mutation p.R327P 0.17 deleterious(0.05) possibly_damaging(0.453) TCGA-86-7955-01 4 114257891 114257891 T C ANK2 Silent p.G1250G 0.46 TCGA-86-7955-01 4 119952278 119952278 G T SYNPO2 Missense_Mutation p.G783V 0.31 tolerated(0.07) possibly_damaging(0.864) TCGA-86-7955-01 4 1232119 1232119 C A CTBP1 Missense_Mutation p.R16L 0.35 deleterious_low_confidence(0.04) benign(0.188) TCGA-86-7955-01 4 125591421 125591421 T A ANKRD50 Missense_Mutation p.D1004V 0.35 deleterious(0) probably_damaging(0.954) TCGA-86-7955-01 4 129012520 129012520 A G LARP1B Missense_Mutation p.Y174C 0.42 tolerated(0.06) benign(0.005) TCGA-86-7955-01 4 13338260 13338260 A G HSP90AB2P RNA 0.43 TCGA-86-7955-01 4 146813419 146813419 C T ZNF827 Silent p.K414K 0.20 TCGA-86-7955-01 4 158142839 158142839 G T GRIA2 Missense_Mutation p.A37S 0.75 tolerated(0.65) possibly_damaging(0.494) TCGA-86-7955-01 4 164394359 164394359 C G TKTL2 Missense_Mutation p.L176F 0.79 deleterious(0) probably_damaging(1) TCGA-86-7955-01 4 167675786 167675786 T A SPOCK3 Silent p.S271S 0.77 TCGA-86-7955-01 4 30725689 30725689 T A PCDH7 Missense_Mutation p.I882N 0.33 deleterious(0) possibly_damaging(0.847) TCGA-86-7955-01 4 46043202 46043202 C A GABRG1 Missense_Mutation p.D401Y 0.14 deleterious(0.02) benign(0.394) TCGA-86-7955-01 4 5682998 5682998 C T EVC2 Missense_Mutation p.E287K 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-86-7955-01 4 66280007 66280007 G A EPHA5 Missense_Mutation p.P561L 0.41 tolerated(0.08) probably_damaging(0.991) TCGA-86-7955-01 4 70146303 70146303 T A UGT2B28 Missense_Mutation p.W29R 0.84 deleterious(0) possibly_damaging(0.516) TCGA-86-7955-01 4 71697287 71697287 G C GRSF1 Missense_Mutation p.L307V 0.40 deleterious(0) probably_damaging(0.955) TCGA-86-7955-01 4 81952498 81952498 G T BMP3 Silent p.A20A 0.41 TCGA-86-7955-01 5 135273182 135273182 C G FBXL21 RNA 0.68 TCGA-86-7955-01 5 137803189 137803189 C T EGR1 Missense_Mutation p.R351C 0.68 deleterious(0) unknown(0) TCGA-86-7955-01 5 13901660 13901660 T C DNAH5 Missense_Mutation p.I585V 0.45 benign(0.112) TCGA-86-7955-01 5 140203730 140203730 A G PCDHA5 Intron 0.09 TCGA-86-7955-01 5 140573768 140573768 G T PCDHB10 Missense_Mutation p.R548L 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.646) TCGA-86-7955-01 5 140579369 140579369 A C PCDHB11 Missense_Mutation p.T8P 0.54 tolerated_low_confidence(0.35) benign(0.001) TCGA-86-7955-01 5 140730107 140730107 G A PCDHGB1 Missense_Mutation p.G94R 0.90 tolerated(0.07) possibly_damaging(0.73) TCGA-86-7955-01 5 140783111 140783111 C G PCDHGA9 Missense_Mutation p.R198G 0.80 tolerated_low_confidence(0.12) benign(0.048) TCGA-86-7955-01 5 156378792 156378792 G T TIMD4 Missense_Mutation p.T137N 0.72 deleterious(0.03) possibly_damaging(0.898) TCGA-86-7955-01 5 156514229 156514229 T A HAVCR2 Missense_Mutation p.I264F 0.12 deleterious(0) probably_damaging(0.974) TCGA-86-7955-01 5 167420020 167420020 C G TENM2 Missense_Mutation p.T340S 0.69 deleterious(0.01) benign(0.314) TCGA-86-7955-01 5 168114105 168114105 C A SLIT3 Missense_Mutation p.G1065C 0.76 deleterious(0) probably_damaging(1) TCGA-86-7955-01 5 173316707 173316707 A T CPEB4 5'UTR 0.70 TCGA-86-7955-01 5 178585817 178585817 A T ADAMTS2 Missense_Mutation p.Y347N 0.65 tolerated(0.18) probably_damaging(0.992) TCGA-86-7955-01 5 24537702 24537702 C T CDH10 Missense_Mutation p.D105N 0.33 tolerated(0.2) probably_damaging(0.957) TCGA-86-7955-01 5 26885835 26885835 G T CDH9 Silent p.A590A 0.59 TCGA-86-7955-01 5 2749726 2749726 G C IRX2 Missense_Mutation p.P142R 0.32 deleterious(0) probably_damaging(1) TCGA-86-7955-01 5 33637845 33637845 C T ADAMTS12 Silent p.K575K 0.39 TCGA-86-7955-01 5 35876369 35876369 C T IL7R Silent p.S387S 0.43 TCGA-86-7955-01 5 38352385 38352385 C T EGFLAM Missense_Mutation p.A166V 0.39 tolerated_low_confidence(0.65) benign(0.005) TCGA-86-7955-01 5 74021555 74021555 C A GFM2 Missense_Mutation p.Q646H 0.05 deleterious(0.02) probably_damaging(0.971) TCGA-86-7955-01 5 7892968 7892968 T C MTRR Missense_Mutation p.V527A 0.48 tolerated(0.12) benign(0.055) TCGA-86-7955-01 6 116573934 116573934 G C TSPYL4 Missense_Mutation p.S413C 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-86-7955-01 6 117053313 117053313 G T KPNA5 Nonsense_Mutation p.E483* 0.58 TCGA-86-7955-01 6 125569527 125569527 G A TPD52L1 Missense_Mutation p.M128I 0.62 tolerated(0.07) probably_damaging(0.997) TCGA-86-7955-01 6 24448417 24448417 A T GPLD1 Missense_Mutation p.F489Y 0.51 tolerated(0.5) benign(0.014) TCGA-86-7955-01 6 25861887 25861887 T A SLC17A3 Missense_Mutation p.Q197L 0.19 tolerated(1) benign(0.001) TCGA-86-7955-01 6 26104370 26104370 C A HIST1H4C Missense_Mutation p.N65K 0.12 deleterious(0) benign(0.345) TCGA-86-7955-01 6 26158661 26158661 G C HIST1H2BD Silent p.S88S 0.35 TCGA-86-7955-01 6 27223044 27223044 C T PRSS16 Nonsense_Mutation p.Q499* 0.43 TCGA-86-7955-01 6 31597368 31597368 A G PRRC2A Missense_Mutation p.H667R 0.21 benign(0.001) TCGA-86-7955-01 6 31741102 31741102 G A VWA7 Silent p.L278L 0.54 TCGA-86-7955-01 6 38747797 38747797 C A DNAH8 Missense_Mutation p.R482S 0.53 benign(0.072) TCGA-86-7955-01 6 41884592 41884592 C A MED20 Nonsense_Mutation p.E34* 0.15 TCGA-86-7955-01 6 42690066 42690066 G A PRPH2 Silent p.L3L 0.09 TCGA-86-7955-01 6 52334218 52334218 G T EFHC1 Missense_Mutation p.V409F 0.54 tolerated(0.51) benign(0.006) TCGA-86-7955-01 6 82901516 82901516 T A IBTK Missense_Mutation p.K1140M 0.46 deleterious(0) probably_damaging(0.993) TCGA-86-7955-01 7 103270586 103270586 A T RELN Missense_Mutation p.F835I 0.37 tolerated(0.46) benign(0.002) TCGA-86-7955-01 7 103808967 103808967 C T ORC5 Silent p.Q277Q 0.34 TCGA-86-7955-01 7 107864242 107864242 G T NRCAM Missense_Mutation p.P273T 0.33 deleterious(0) probably_damaging(1) TCGA-86-7955-01 7 11091334 11091334 A G PHF14 Missense_Mutation p.Q803R 0.34 tolerated(0.3) benign(0.159) TCGA-86-7955-01 7 112461863 112461863 C G C7orf60 Missense_Mutation p.G385A 0.41 deleterious_low_confidence(0.03) possibly_damaging(0.521) TCGA-86-7955-01 7 113519663 113519663 G A PPP1R3A Missense_Mutation p.A495V 0.42 tolerated(0.08) benign(0.037) TCGA-86-7955-01 7 122635314 122635314 C T TAS2R16 Silent p.L125L 0.65 TCGA-86-7955-01 7 127725833 127725833 G A SND1 Splice_Site p.X768_splice 0.28 TCGA-86-7955-01 7 128492926 128492926 G T FLNC Missense_Mutation p.V2017L 0.30 deleterious(0) probably_damaging(0.994) TCGA-86-7955-01 7 129950788 129950788 G T CPA4 Missense_Mutation p.G319W 0.39 deleterious(0) probably_damaging(0.999) TCGA-86-7955-01 7 136700111 136700111 G T CHRM2 Missense_Mutation p.G167W 0.31 deleterious(0) probably_damaging(1) TCGA-86-7955-01 7 137028207 137028207 T C PTN 5'UTR 0.32 TCGA-86-7955-01 7 143175118 143175118 G A TAS2R41 Silent p.L51L 0.47 TCGA-86-7955-01 7 143175119 143175119 G T TAS2R41 Missense_Mutation p.G52C 0.47 deleterious(0) probably_damaging(0.987) TCGA-86-7955-01 7 14775705 14775705 T C DGKB Missense_Mutation p.S95G 0.36 tolerated(0.08) benign(0.003) TCGA-86-7955-01 7 150730816 150730816 G T ABCB8 Missense_Mutation p.V74F 0.44 deleterious_low_confidence(0.03) benign(0.014) TCGA-86-7955-01 7 150918711 150918711 A T ABCF2 Missense_Mutation p.C292S 0.32 deleterious(0.02) possibly_damaging(0.831) TCGA-86-7955-01 7 154585852 154585852 C A DPP6 Missense_Mutation p.N400K 0.51 deleterious(0) probably_damaging(0.952) TCGA-86-7955-01 7 154585853 154585853 C A DPP6 Silent p.R401R 0.53 TCGA-86-7955-01 7 22190105 22190105 G C RAPGEF5 Missense_Mutation p.P449A 0.45 deleterious(0.03) benign(0.025) TCGA-86-7955-01 7 23016318 23016318 T C FAM126A Missense_Mutation p.Q175R 0.40 tolerated(0.06) benign(0.094) TCGA-86-7955-01 7 2969697 2969697 C T CARD11 Missense_Mutation p.E528K 0.21 tolerated(0.62) benign(0.001) TCGA-86-7955-01 7 31617539 31617539 G - CCDC129 Frame_Shift_Del p.D247Mfs*23 0.32 TCGA-86-7955-01 7 36579941 36579941 G T AOAH Missense_Mutation p.N430K 0.33 tolerated(0.1) benign(0.013) TCGA-86-7955-01 7 38254007 38254007 A T STARD3NL Missense_Mutation p.D92V 0.31 deleterious(0) possibly_damaging(0.871) TCGA-86-7955-01 7 40172830 40172830 C T MPLKIP Missense_Mutation p.G123E 0.31 deleterious(0.01) probably_damaging(0.988) TCGA-86-7955-01 7 50680527 50680527 C A GRB10 Missense_Mutation p.V369F 0.32 deleterious(0.04) benign(0.096) TCGA-86-7955-01 7 5521544 5521544 G A FBXL18 Silent p.P673P 0.33 TCGA-86-7955-01 7 86493790 86493790 T C GRM3 3'UTR 0.17 TCGA-86-7955-01 7 87199537 87199537 C G ABCB1 Missense_Mutation p.D97H 0.42 tolerated(0.21) benign(0.001) TCGA-86-7955-01 7 91699439 91699439 G A AKAP9 Silent p.R2142R 0.34 TCGA-86-7955-01 7 98256543 98256543 C A NPTX2 Silent p.R319R 0.35 TCGA-86-7955-01 8 131916041 131916041 C A ADCY8 Missense_Mutation p.D630Y 0.83 deleterious(0.03) possibly_damaging(0.578) TCGA-86-7955-01 8 133673713 133673713 C T LRRC6 Silent p.G57G 0.19 TCGA-86-7955-01 8 21846522 21846522 A T XPO7 Missense_Mutation p.N599I 0.85 deleterious(0) probably_damaging(0.988) TCGA-86-7955-01 8 28575527 28575527 C G EXTL3 Missense_Mutation p.Q651E 0.12 tolerated(0.06) benign(0.306) TCGA-86-7955-01 8 36673144 36673144 G T KCNU1 Missense_Mutation p.V312L 0.92 tolerated(0.13) benign(0.022) TCGA-86-7955-01 8 74893845 74893845 G A TMEM70 Missense_Mutation p.D258N 0.84 tolerated(0.06) possibly_damaging(0.448) TCGA-86-7955-01 8 77763391 77763391 C A ZFHX4 Missense_Mutation p.L1412I 0.83 possibly_damaging(0.567) TCGA-86-7955-01 9 112900123 112900123 C T PALM2-AKAP2 Nonsense_Mutation p.R767* 0.28 TCGA-86-7955-01 9 116226104 116226104 G A RGS3 Intron 0.84 TCGA-86-7955-01 9 131762057 131762057 G T NUP188 Silent p.R1272R 0.68 TCGA-86-7955-01 9 134015982 134015982 A T NUP214 Silent p.S393S 0.76 TCGA-86-7955-01 X 134186112 134186112 C T FAM127B Silent p.K9K 0.08 TCGA-86-7955-01 X 142967630 142967630 C A UBE2NL Missense_Mutation p.A143E 0.86 tolerated(1) benign(0.038) TCGA-86-7955-01 X 155239804 155239804 C G IL9R Missense_Mutation p.S432R 0.13 tolerated_low_confidence(0.09) possibly_damaging(0.883) TCGA-86-7955-01 X 30578092 30578092 T A CXorf21 Missense_Mutation p.L127F 0.74 deleterious(0) probably_damaging(0.999) TCGA-86-7955-01 X 31089931 31089931 A G FTHL17 Missense_Mutation p.V47A 0.87 deleterious(0.03) possibly_damaging(0.672) TCGA-86-7955-01 X 47061801 47061801 G T UBA1 Silent p.T318T 0.76 TCGA-86-7955-01 X 50129405 50129405 G T DGKK RNA 0.80 TCGA-86-7955-01 X 54228562 54228562 C G WNK3 Missense_Mutation p.M1645I 0.69 deleterious(0.02) possibly_damaging(0.776) TCGA-86-7955-01 X 78427206 78427206 C T GPR174 Silent p.T234T 0.81 TCGA-86-7955-01 X 89177383 89177383 G T TGIF2LX Missense_Mutation p.W100L 0.78 deleterious(0) probably_damaging(0.992) TCGA-86-8054-01 10 101165933 101165933 C A GOT1 Missense_Mutation p.K166N 0.49 tolerated(0.18) benign(0.005) TCGA-86-8054-01 10 127668775 127668775 T A FANK1 Missense_Mutation p.V20E 0.27 deleterious(0) probably_damaging(0.996) TCGA-86-8054-01 10 128936168 128936168 G A FAM196A Missense_Mutation p.S458L 0.27 deleterious(0) possibly_damaging(0.547) TCGA-86-8054-01 10 135093346 135093346 T A TUBGCP2 Missense_Mutation p.Q906L 0.21 deleterious(0.01) benign(0.43) TCGA-86-8054-01 10 135165551 135165551 G T PRAP1 Missense_Mutation p.D57Y 0.25 deleterious(0.01) possibly_damaging(0.706) TCGA-86-8054-01 10 15648360 15648360 T A ITGA8 Missense_Mutation p.D609V 0.30 deleterious(0.02) benign(0.077) TCGA-86-8054-01 10 30653951 30653951 G T AL161651.1 3'Flank 0.36 TCGA-86-8054-01 10 55582244 55582244 G T PCDH15 Missense_Mutation p.P1750T 0.25 deleterious_low_confidence(0.03) unknown(0) TCGA-86-8054-01 10 70405963 70405963 G T TET1 Silent p.R1159R 0.24 TCGA-86-8054-01 10 75053220 75053220 C A TTC18 Intron 0.47 TCGA-86-8054-01 10 96361378 96361378 A T HELLS Nonstop_Mutation p.*839Lext*6 0.16 TCGA-86-8054-01 11 101374895 101374895 G T TRPC6 Missense_Mutation p.H269N 0.33 deleterious(0) probably_damaging(0.996) TCGA-86-8054-01 11 108121472 108121472 T A ATM Nonsense_Mutation p.L427* 0.27 TCGA-86-8054-01 11 108205829 108205829 T G ATM Missense_Mutation p.L2715R 0.48 deleterious(0) probably_damaging(1) TCGA-86-8054-01 11 117062657 117062657 C A SIDT2 Missense_Mutation p.P600Q 0.27 deleterious(0) probably_damaging(0.998) TCGA-86-8054-01 11 117376266 117376266 C T DSCAML1 Silent p.Q715Q 0.07 TCGA-86-8054-01 11 118997723 118997723 C T HINFP Silent p.S23S 0.28 TCGA-86-8054-01 11 119290857 119290857 C A THY1 Missense_Mutation p.A93S 0.32 tolerated(0.72) benign(0.015) TCGA-86-8054-01 11 22387149 22387149 G T SLC17A6 Missense_Mutation p.A269S 0.25 tolerated(0.29) benign(0.297) TCGA-86-8054-01 11 27389740 27389740 C G LGR4 Missense_Mutation p.D844H 0.23 deleterious(0) probably_damaging(0.995) TCGA-86-8054-01 11 3249661 3249661 C A MRGPRE Silent p.L122L 0.17 TCGA-86-8054-01 11 36595368 36595368 C A RAG1 Missense_Mutation p.P172T 0.16 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-86-8054-01 11 55322151 55322151 T C OR4C15 Silent p.D123D 0.17 TCGA-86-8054-01 11 61908404 61908404 C G INCENP Missense_Mutation p.T494S 0.04 tolerated(0.11) unknown(0) TCGA-86-8054-01 11 64359011 64359011 G A SLC22A12 5'UTR 0.38 TCGA-86-8054-01 11 6630369 6630369 C T ILK Silent p.N200N 0.24 TCGA-86-8054-01 11 66610492 66610492 C A C11orf80 Missense_Mutation p.H640Q 0.36 tolerated(0.76) possibly_damaging(0.86) TCGA-86-8054-01 11 68773087 68773087 G A MRGPRF Missense_Mutation p.R231C 0.29 deleterious(0) probably_damaging(0.999) TCGA-86-8054-01 11 7982582 7982582 C T NLRP10 Missense_Mutation p.G193S 0.46 deleterious(0.01) probably_damaging(0.966) TCGA-86-8054-01 11 88300621 88300621 G C GRM5 Missense_Mutation p.L744V 0.29 tolerated(0.17) probably_damaging(0.999) TCGA-86-8054-01 11 92577696 92577696 G T FAT3 Missense_Mutation p.K3721N 0.31 probably_damaging(0.993) TCGA-86-8054-01 11 9496106 9496106 G T ZNF143 Missense_Mutation p.S100I 0.55 deleterious(0.02) possibly_damaging(0.736) TCGA-86-8054-01 12 108642021 108642021 G T WSCD2 Silent p.A533A 0.26 TCGA-86-8054-01 12 113599166 113599166 T A DDX54 Missense_Mutation p.K774N 0.53 deleterious(0.01) probably_damaging(0.991) TCGA-86-8054-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.20 deleterious(0) possibly_damaging(0.479) TCGA-86-8054-01 12 49717402 49717402 G T TROAP Missense_Mutation p.R4L 0.23 tolerated(1) benign(0.001) TCGA-86-8054-01 12 6058256 6058256 G A VWF Silent p.T2789T 0.38 TCGA-86-8054-01 12 6760359 6760359 A C ING4 3'UTR 0.49 TCGA-86-8054-01 12 69129056 69129056 G A NUP107 Missense_Mutation p.D812N 0.25 tolerated(0.33) possibly_damaging(0.863) TCGA-86-8054-01 12 70990017 70990017 A T PTPRB Missense_Mutation p.V357D 0.51 deleterious(0) probably_damaging(0.915) TCGA-86-8054-01 12 73056953 73056953 T G TRHDE Nonsense_Mutation p.L1018* 0.15 TCGA-86-8054-01 12 91502116 91502116 T C LUM Missense_Mutation p.N214S 0.53 tolerated(0.57) benign(0.014) TCGA-86-8054-01 12 9229988 9229988 G C A2M Missense_Mutation p.S1102C 0.39 deleterious(0) probably_damaging(0.986) TCGA-86-8054-01 12 95694452 95694452 A T VEZT 3'UTR 0.13 TCGA-86-8054-01 12 97102497 97102497 G C C12orf55 Missense_Mutation p.A2214P 0.51 deleterious(0.01) benign(0.006) TCGA-86-8054-01 13 110839573 110839573 C A COL4A1 Missense_Mutation p.G547V 0.39 benign(0.027) TCGA-86-8054-01 13 110839574 110839574 C A COL4A1 Missense_Mutation p.G547C 0.38 benign(0.197) TCGA-86-8054-01 13 20315738 20315738 T C PSPC1 Missense_Mutation p.Q340R 0.59 tolerated(0.07) probably_damaging(0.968) TCGA-86-8054-01 13 23985416 23985416 G A SACS 5'UTR 0.31 TCGA-86-8054-01 13 26789730 26789730 C A RNF6 Splice_Site p.X97_splice 0.72 TCGA-86-8054-01 13 36049122 36049122 G C MAB21L1 3'UTR 0.76 TCGA-86-8054-01 13 53421358 53421358 G T PCDH8 Missense_Mutation p.A405E 0.80 deleterious(0) possibly_damaging(0.903) TCGA-86-8054-01 13 70456600 70456600 G T KLHL1 Missense_Mutation p.Q348K 0.61 deleterious(0) probably_damaging(0.993) TCGA-86-8054-01 14 20344748 20344748 A C OR4K2 Missense_Mutation p.T108P 0.22 deleterious(0.01) possibly_damaging(0.905) TCGA-86-8054-01 14 20859842 20859842 C A TEP1 Silent p.L671L 0.25 TCGA-86-8054-01 14 21785926 21785926 A G RPGRIP1 Missense_Mutation p.Q408R 0.60 tolerated(0.21) benign(0.266) TCGA-86-8054-01 14 21883993 21883993 T A CHD8 Missense_Mutation p.E597V 0.22 deleterious(0) probably_damaging(0.991) TCGA-86-8054-01 14 23517525 23517525 C G CDH24 Silent p.G708G 0.50 TCGA-86-8054-01 14 36987199 36987199 C T NKX2-1 Missense_Mutation p.G164S 0.10 tolerated(0.16) possibly_damaging(0.447) TCGA-86-8054-01 14 60758115 60758115 G T PPM1A Missense_Mutation p.K427N 0.67 deleterious(0) probably_damaging(1) TCGA-86-8054-01 14 69847238 69847239 - A ERH 3'UTR 0.47 TCGA-86-8054-01 14 94756345 94756345 G A SERPINA10 Missense_Mutation p.R196C 0.30 deleterious(0.04) possibly_damaging(0.596) TCGA-86-8054-01 14 94964740 94964740 T C SERPINA12 5'UTR 0.78 TCGA-86-8054-01 15 25351705 25351705 A C SNORD116-29 RNA 0.27 TCGA-86-8054-01 15 27777780 27777780 C A GABRG3 Missense_Mutation p.T386N 0.34 tolerated(0.42) benign(0.035) TCGA-86-8054-01 15 35273928 35273928 C A ZNF770 Nonsense_Mutation p.E570* 0.25 TCGA-86-8054-01 15 37110036 37110036 A T CSNK1A1P1 RNA 0.14 TCGA-86-8054-01 15 41488148 41488148 C A EXD1 Missense_Mutation p.D150Y 0.35 deleterious(0) probably_damaging(0.997) TCGA-86-8054-01 15 41786466 41786466 T C ITPKA Missense_Mutation p.L114P 0.35 deleterious(0.02) probably_damaging(0.993) TCGA-86-8054-01 15 43044864 43044864 G A TTBK2 Silent p.D860D 0.41 TCGA-86-8054-01 15 49284482 49284482 T C SECISBP2L Missense_Mutation p.K1089E 0.33 tolerated_low_confidence(0.07) benign(0.001) TCGA-86-8054-01 15 54307658 54307658 A T UNC13C Missense_Mutation p.Y853F 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.521) TCGA-86-8054-01 15 89401738 89401738 G A ACAN Missense_Mutation p.M1974I 0.26 tolerated(0.66) benign(0.014) TCGA-86-8054-01 16 1129687 1129687 C T SSTR5 Silent p.A273A 0.73 TCGA-86-8054-01 16 1547465 1547465 G T TELO2 Silent p.R262R 1.00 TCGA-86-8054-01 16 28123277 28123277 C G XPO6 Missense_Mutation p.W734C 0.34 deleterious(0.04) benign(0.006) TCGA-86-8054-01 16 28511130 28511130 G T IL27 Missense_Mutation p.P192T 0.75 tolerated(0.19) benign(0.04) TCGA-86-8054-01 16 28511131 28511131 G T IL27 Silent p.G191G 0.75 TCGA-86-8054-01 16 31926476 31926476 A T ZNF267 Missense_Mutation p.K302N 0.79 deleterious(0) probably_damaging(0.981) TCGA-86-8054-01 16 3639153 3639153 C A SLX4 Missense_Mutation p.G1496C 0.38 deleterious(0) benign(0.403) TCGA-86-8054-01 16 48258237 48258237 C A ABCC11 Missense_Mutation p.A167S 0.67 deleterious(0.01) benign(0.102) TCGA-86-8054-01 16 48258340 48258340 C A ABCC11 Missense_Mutation p.R132S 0.74 deleterious(0) probably_damaging(0.95) TCGA-86-8054-01 16 66951552 66951552 A T CDH16 Missense_Mutation p.L41Q 0.52 deleterious(0) possibly_damaging(0.841) TCGA-86-8054-01 17 10212682 10212682 G T MYH13 Missense_Mutation p.R1680S 0.14 deleterious(0) probably_damaging(0.997) TCGA-86-8054-01 17 10618708 10618708 C A TMEM220 3'UTR 0.33 TCGA-86-8054-01 17 11520893 11520893 G T DNAH9 Missense_Mutation p.R357M 0.13 probably_damaging(0.998) TCGA-86-8054-01 17 18059602 18059602 G C MYO15A Silent p.A2851A 0.69 TCGA-86-8054-01 17 21477551 21477551 C T AC138710.1 5'Flank 0.15 TCGA-86-8054-01 17 25752504 25752504 C A TBC1D3P5 RNA 0.29 TCGA-86-8054-01 17 27308689 27308689 G T SEZ6 Missense_Mutation p.P142T 0.12 tolerated(0.57) benign(0.044) TCGA-86-8054-01 17 30643292 30643292 G A RHBDL3 Missense_Mutation p.M308I 0.50 tolerated(0.21) benign(0.285) TCGA-86-8054-01 17 3119607 3119607 G - OR1A1 Frame_Shift_Del p.G232Afs*31 0.17 TCGA-86-8054-01 17 39388943 39388943 C T KRTAP9-3 Missense_Mutation p.P64S 0.23 deleterious(0.01) unknown(0) TCGA-86-8054-01 17 41959743 41959743 G A MPP2 Missense_Mutation p.P197L 0.47 deleterious(0) probably_damaging(0.995) TCGA-86-8054-01 17 61972493 61972493 T A CSH1 Silent p.A181A 0.36 TCGA-86-8054-01 17 66039065 66039065 G T KPNA2 Missense_Mutation p.V206F 0.39 deleterious(0) benign(0.09) TCGA-86-8054-01 17 6616676 6616676 C T SLC13A5 5'UTR 0.10 TCGA-86-8054-01 17 67170434 67170434 A C ABCA10 Missense_Mutation p.F1050L 0.36 tolerated(0.3) benign(0.042) TCGA-86-8054-01 17 74472971 74472971 G A RHBDF2 Silent p.S381S 0.38 TCGA-86-8054-01 17 74472972 74472972 C A RHBDF2 Missense_Mutation p.S381I 0.41 deleterious(0.03) benign(0.09) TCGA-86-8054-01 17 74473273 74473273 C T RHBDF2 Silent p.V332V 0.41 TCGA-86-8054-01 17 80046960 80046960 G A FASN Missense_Mutation p.S730F 0.50 tolerated(0.13) benign(0.079) TCGA-86-8054-01 17 9694597 9694597 C - DHRS7C Frame_Shift_Del p.G2Efs*6 0.26 TCGA-86-8054-01 18 14757818 14757818 G T ANKRD30B Missense_Mutation p.A208S 0.12 deleterious(0.02) possibly_damaging(0.831) TCGA-86-8054-01 18 19236944 19236944 A G ABHD3 Missense_Mutation p.M312T 0.35 tolerated(0.15) benign(0.16) TCGA-86-8054-01 18 30803072 30803072 C G CCDC178 Missense_Mutation p.E644Q 0.35 tolerated(0.1) probably_damaging(0.973) TCGA-86-8054-01 18 51057013 51057013 C A DCC Nonsense_Mutation p.S1445* 0.22 TCGA-86-8054-01 18 54815043 54815043 C A BOD1L2 Missense_Mutation p.P167Q 0.12 deleterious(0.02) benign(0.003) TCGA-86-8054-01 19 1220635 1220636 - T STK11 Frame_Shift_Ins p.Q220Pfs*46 0.95 TCGA-86-8054-01 19 14073934 14073934 C G RFX1 Missense_Mutation p.E908D 0.28 tolerated(0.1) benign(0.034) TCGA-86-8054-01 19 16923619 16923619 G T NWD1 Intron 0.67 TCGA-86-8054-01 19 31767550 31767550 A G TSHZ3 Missense_Mutation p.F1050S 0.41 deleterious(0) probably_damaging(0.999) TCGA-86-8054-01 19 31767853 31767853 C T TSHZ3 Nonsense_Mutation p.W949* 0.52 TCGA-86-8054-01 19 33353038 33353038 C A SLC7A9 Missense_Mutation p.W230C 0.21 deleterious(0) probably_damaging(0.999) TCGA-86-8054-01 19 36018402 36018402 C T SBSN Missense_Mutation p.G261D 0.58 tolerated(0.1) probably_damaging(0.982) TCGA-86-8054-01 19 40741249 40741249 C A AKT2 Missense_Mutation p.G395V 0.19 deleterious(0) probably_damaging(0.994) TCGA-86-8054-01 19 43772179 43772179 G C PSG9 Missense_Mutation p.P63A 0.29 tolerated(0.83) benign(0.001) TCGA-86-8054-01 19 44303096 44303096 C T LYPD5 Missense_Mutation p.G80R 0.17 deleterious(0) probably_damaging(0.969) TCGA-86-8054-01 19 44352749 44352749 A G ZNF283 Missense_Mutation p.T666A 0.25 tolerated(0.16) benign(0.058) TCGA-86-8054-01 19 48653361 48653361 C G LIG1 Silent p.T227T 0.53 TCGA-86-8054-01 19 49973632 49973632 C G ALDH16A1 Missense_Mutation p.R773G 0.06 deleterious(0.03) possibly_damaging(0.597) TCGA-86-8054-01 19 50385319 50385319 C G TBC1D17 Silent p.L183L 0.55 TCGA-86-8054-01 19 51165362 51165362 G A SHANK1 Nonsense_Mutation p.R2116* 0.51 TCGA-86-8054-01 19 53452999 53452999 A C ZNF816 3'UTR 0.15 TCGA-86-8054-01 19 53754829 53754829 C G ZNF677 5'UTR 0.49 TCGA-86-8054-01 19 53950532 53950532 C T ZNF761 RNA 0.44 TCGA-86-8054-01 19 54299173 54299174 - T NLRP12 Frame_Shift_Ins p.T1013Nfs*29 0.20 TCGA-86-8054-01 19 56539131 56539131 C A NLRP5 Missense_Mutation p.T511N 0.30 deleterious(0.04) possibly_damaging(0.818) TCGA-86-8054-01 19 9089552 9089552 C A MUC16 Missense_Mutation p.G755W 0.77 unknown(0) TCGA-86-8054-01 1 110919594 110919594 A G SLC16A4 Missense_Mutation p.L407P 0.15 deleterious(0) probably_damaging(0.987) TCGA-86-8054-01 1 113212200 113212200 C G CAPZA1 Missense_Mutation p.I231M 0.12 deleterious(0.03) benign(0.167) TCGA-86-8054-01 1 145439850 145439850 G T TXNIP Silent p.P132P 0.82 TCGA-86-8054-01 1 150054891 150054891 G C VPS45 Missense_Mutation p.S343T 0.11 tolerated(0.23) benign(0.005) TCGA-86-8054-01 1 158746835 158746835 C A OR6N2 Silent p.L197L 0.64 TCGA-86-8054-01 1 168215870 168215870 G T SFT2D2 3'UTR 0.10 TCGA-86-8054-01 1 17250924 17250924 C T CROCC Missense_Mutation p.R101C 0.11 possibly_damaging(0.471) TCGA-86-8054-01 1 186043964 186043964 C A HMCN1 Missense_Mutation p.T2744N 0.65 probably_damaging(0.997) TCGA-86-8054-01 1 192548281 192548281 C T RGS1 Silent p.F153F 0.16 TCGA-86-8054-01 1 19447883 19447883 C T UBR4 Missense_Mutation p.G3314D 0.25 probably_damaging(0.999) TCGA-86-8054-01 1 196920060 196920060 A T CFHR2 Missense_Mutation p.Q111L 0.14 deleterious(0.02) possibly_damaging(0.673) TCGA-86-8054-01 1 207297295 207297295 C A C4BPA Missense_Mutation p.R153S 0.12 tolerated(0.16) benign(0.017) TCGA-86-8054-01 1 210010463 210010463 C G DIEXF Silent p.A323A 0.24 TCGA-86-8054-01 1 212798413 212798413 G T FAM71A Missense_Mutation p.R65L 0.63 deleterious(0) probably_damaging(0.922) TCGA-86-8054-01 1 216260156 216260156 G A USH2A Missense_Mutation p.S1631F 0.61 possibly_damaging(0.756) TCGA-86-8054-01 1 247599305 247599305 T C NLRP3 Silent p.C844C 0.19 TCGA-86-8054-01 1 247654839 247654839 G T OR2W5 RNA 0.20 TCGA-86-8054-01 1 248112998 248112998 T C OR2L8 Missense_Mutation p.L280P 0.52 deleterious(0) probably_damaging(0.996) TCGA-86-8054-01 1 248436587 248436587 C A OR2T33 Missense_Mutation p.C177F 0.67 deleterious(0) probably_damaging(1) TCGA-86-8054-01 1 248844785 248844785 A G OR14I1 Missense_Mutation p.L274P 0.20 deleterious(0) benign(0.389) TCGA-86-8054-01 1 26349779 26349779 G T EXTL1 Missense_Mutation p.Q214H 0.33 tolerated(0.54) probably_damaging(0.937) TCGA-86-8054-01 1 27720810 27720810 C T GPR3 Silent p.L170L 0.38 TCGA-86-8054-01 1 39905146 39905146 A T MACF1 Missense_Mutation p.I4082F 0.20 probably_damaging(0.999) TCGA-86-8054-01 1 47282735 47282735 A C CYP4B1 Missense_Mutation p.K363N 0.24 tolerated(0.09) benign(0.077) TCGA-86-8054-01 1 53927181 53927181 G T DMRTB1 Missense_Mutation p.G205C 0.37 deleterious(0.01) possibly_damaging(0.577) TCGA-86-8054-01 1 57169857 57169857 G T PRKAA2 Missense_Mutation p.M334I 0.36 tolerated(0.26) possibly_damaging(0.792) TCGA-86-8054-01 20 1162112 1162112 G T TMEM74B Missense_Mutation p.P51T 0.62 tolerated(0.22) possibly_damaging(0.766) TCGA-86-8054-01 20 1961289 1961289 C A PDYN Missense_Mutation p.A149S 0.10 tolerated(1) benign(0.002) TCGA-86-8054-01 20 2306540 2306540 G A TGM3 Silent p.L343L 0.36 TCGA-86-8054-01 20 33588799 33588799 G A MYH7B Missense_Mutation p.M1813I 0.18 benign(0.255) TCGA-86-8054-01 20 54573595 54573595 T C CBLN4 3'UTR 0.16 TCGA-86-8054-01 20 7864175 7864175 G T HAO1 3'UTR 0.21 TCGA-86-8054-01 21 10920083 10920083 C A TPTE Splice_Site p.X390_splice 0.18 TCGA-86-8054-01 21 11047557 11047557 G T BAGE2 RNA 0.04 TCGA-86-8054-01 22 18301310 18301310 G - MICAL3 Frame_Shift_Del p.Q1373Rfs*65 0.36 TCGA-86-8054-01 22 24561546 24561546 C T CABIN1 Silent p.F1653F 0.33 TCGA-86-8054-01 22 31479272 31479272 G A SMTN Missense_Mutation p.D10N 0.28 deleterious(0) probably_damaging(0.999) TCGA-86-8054-01 22 47193463 47193463 G T TBC1D22A Missense_Mutation p.A195S 0.43 tolerated(0.57) benign(0.024) TCGA-86-8054-01 2 101611974 101611974 A T NPAS2 Missense_Mutation p.Q802L 0.25 tolerated_low_confidence(0.07) unknown(0) TCGA-86-8054-01 2 107423121 107423121 C A ST6GAL2 3'UTR 0.22 TCGA-86-8054-01 2 108489032 108489032 C T RGPD4 Silent p.S1524S 0.44 TCGA-86-8054-01 2 130738129 130738129 G A RAB6C Silent p.G147G 0.58 TCGA-86-8054-01 2 149847693 149847693 G A KIF5C Missense_Mutation p.C629Y 0.08 tolerated(0.11) possibly_damaging(0.655) TCGA-86-8054-01 2 167055688 167055688 C A SCN9A Missense_Mutation p.V1810F 0.21 tolerated(0.3) possibly_damaging(0.754) TCGA-86-8054-01 2 168115060 168115060 T C XIRP2 3'UTR 0.32 TCGA-86-8054-01 2 170349500 170349500 G T BBS5 Missense_Mutation p.W168L 0.24 deleterious(0) probably_damaging(0.973) TCGA-86-8054-01 2 176965007 176965007 C A HOXD12 Missense_Mutation p.P160T 0.15 tolerated(0.31) benign(0) TCGA-86-8054-01 2 179455753 179455753 G T TTN Silent p.I20233I 0.05 TCGA-86-8054-01 2 189858800 189858800 G T COL3A1 Missense_Mutation p.G396C 0.59 unknown(0) TCGA-86-8054-01 2 234172699 234172699 T A ATG16L1 Missense_Mutation p.M126K 0.62 tolerated(0.89) benign(0.077) TCGA-86-8054-01 2 25972718 25972718 C - ASXL2 Frame_Shift_Del p.K569Nfs*11 0.16 TCGA-86-8054-01 2 26697430 26697430 C T OTOF Missense_Mutation p.R1080H 0.46 tolerated(0.1) probably_damaging(0.995) TCGA-86-8054-01 2 26702189 26702189 C G OTOF Silent p.P719P 0.26 TCGA-86-8054-01 2 43931184 43931184 G T PLEKHH2 Missense_Mutation p.S572I 0.33 tolerated(0.23) benign(0.002) TCGA-86-8054-01 2 68872899 68872899 C A PROKR1 5'UTR 0.33 TCGA-86-8054-01 2 74043578 74043578 C A C2orf78 Nonsense_Mutation p.S743* 0.38 TCGA-86-8054-01 2 98866890 98866890 C A VWA3B Missense_Mutation p.S928Y 0.27 deleterious(0) possibly_damaging(0.578) TCGA-86-8054-01 3 119905504 119905504 C A GPR156 Splice_Site p.X200_splice 0.73 TCGA-86-8054-01 3 135975417 135975417 C T PCCB Silent p.V108V 0.80 TCGA-86-8054-01 3 137822393 137822393 C A DZIP1L Nonsense_Mutation p.E141* 0.65 TCGA-86-8054-01 3 14712431 14712431 G T CCDC174 Missense_Mutation p.R378S 0.30 tolerated(0.1) possibly_damaging(0.587) TCGA-86-8054-01 3 164908235 164908235 C G SLITRK3 Missense_Mutation p.K128N 0.47 deleterious(0) probably_damaging(0.962) TCGA-86-8054-01 3 167414851 167414851 C A PDCD10 Missense_Mutation p.V72L 0.07 tolerated(1) benign(0.001) TCGA-86-8054-01 3 4712509 4712509 G T ITPR1 Missense_Mutation p.W686C 0.80 deleterious(0) probably_damaging(0.998) TCGA-86-8054-01 3 52366327 52366327 C A DNAH1 Missense_Mutation p.D401E 0.43 benign(0.002) TCGA-86-8054-01 3 52469737 52469737 C T SEMA3G Missense_Mutation p.R744Q 0.30 tolerated(0.06) benign(0.007) TCGA-86-8054-01 3 9989107 9989107 C A PRRT3 Missense_Mutation p.G584W 0.74 tolerated(0.18) probably_damaging(0.958) TCGA-86-8054-01 4 114199055 114199055 C A ANK2 Silent p.L582L 0.44 TCGA-86-8054-01 4 126398543 126398543 G T FAT4 Intron 0.33 TCGA-86-8054-01 4 134084154 134084154 C T PCDH10 Silent p.C940C 0.36 TCGA-86-8054-01 4 146042521 146042521 A G ABCE1 Missense_Mutation p.Q414R 0.30 deleterious(0.01) probably_damaging(1) TCGA-86-8054-01 4 152682142 152682142 C A PET112 5'UTR 0.22 TCGA-86-8054-01 4 158142865 158142865 A T GRIA2 Silent p.R45R 0.56 TCGA-86-8054-01 4 172735812 172735812 C A GALNTL6 Silent p.L27L 0.36 TCGA-86-8054-01 4 183720996 183720996 C T TENM3 Missense_Mutation p.A2531V 0.13 deleterious(0) possibly_damaging(0.739) TCGA-86-8054-01 4 20543156 20543156 C G SLIT2 Missense_Mutation p.T686R 0.26 deleterious(0) probably_damaging(0.999) TCGA-86-8054-01 4 49005747 49005752 AACAGG - CWH43 Splice_Site p.X268_splice 0.22 TCGA-86-8054-01 4 49005760 49005760 T G CWH43 Missense_Mutation p.S271A 0.21 tolerated(0.12) benign(0.023) TCGA-86-8054-01 4 66201747 66201747 G T EPHA5 Silent p.R919R 0.35 TCGA-86-8054-01 4 70156380 70156380 G T UGT2B28 Silent p.G387G 0.35 TCGA-86-8054-01 4 70350935 70350935 T C UGT2B4 Missense_Mutation p.N434S 0.37 deleterious(0.01) benign(0.064) TCGA-86-8054-01 4 71114937 71114937 C A CSN3 Missense_Mutation p.P104T 0.24 tolerated(0.42) benign(0.007) TCGA-86-8054-01 5 140755903 140755903 G T PCDHGA6 Missense_Mutation p.Q751H 0.26 deleterious_low_confidence(0.01) benign(0.167) TCGA-86-8054-01 5 147889552 147889552 A T HTR4 Silent p.S181S 0.19 TCGA-86-8054-01 5 156531729 156531729 T C HAVCR2 Silent p.R142R 0.14 TCGA-86-8054-01 5 171471924 171471924 C A STK10 Missense_Mutation p.A957S 0.56 tolerated_low_confidence(1) benign(0.001) TCGA-86-8054-01 5 172324070 172324070 A G ERGIC1 Missense_Mutation p.T50A 0.52 tolerated(0.77) benign(0.065) TCGA-86-8054-01 5 44305253 44305253 C A FGF10 Missense_Mutation p.E157D 0.09 deleterious(0.03) probably_damaging(0.996) TCGA-86-8054-01 5 5242179 5242179 G T ADAMTS16 Missense_Mutation p.G846V 0.31 deleterious(0) probably_damaging(0.973) TCGA-86-8054-01 5 71494366 71494366 C T MAP1B Silent p.A1728A 0.55 TCGA-86-8054-01 5 9190400 9190400 G A SEMA5A Missense_Mutation p.H418Y 0.41 deleterious(0.03) benign(0.313) TCGA-86-8054-01 6 130182367 130182367 C T TMEM244 5'UTR 0.67 TCGA-86-8054-01 6 130761701 130761701 G C TMEM200A Missense_Mutation p.R45P 0.76 deleterious(0) possibly_damaging(0.608) TCGA-86-8054-01 6 165832220 165832220 G A PDE10A Nonsense_Mutation p.Q301* 0.81 TCGA-86-8054-01 6 169637753 169637753 G T THBS2 Silent p.R423R 0.77 TCGA-86-8054-01 6 20124655 20124655 G C MBOAT1 Nonsense_Mutation p.Y297* 0.19 TCGA-86-8054-01 6 26027373 26027373 C - HIST1H4B Frame_Shift_Del p.R37Afs*14 0.16 TCGA-86-8054-01 6 31843898 31843898 G A SLC44A4 Missense_Mutation p.T33I 0.58 deleterious(0) probably_damaging(0.999) TCGA-86-8054-01 6 34826034 34826034 T G UHRF1BP1 Missense_Mutation p.L634R 0.57 deleterious(0) possibly_damaging(0.797) TCGA-86-8054-01 6 63995567 63995567 G T LGSN Silent p.L85L 0.40 TCGA-86-8054-01 6 7230036 7230036 G T RREB1 Silent p.G568G 0.39 TCGA-86-8054-01 7 100678974 100678974 C A MUC17 Missense_Mutation p.P1426H 0.50 unknown(0) TCGA-86-8054-01 7 103183253 103183253 C T RELN Missense_Mutation p.S2199N 0.47 tolerated(0.06) benign(0.034) TCGA-86-8054-01 7 111368597 111368597 C T DOCK4 Silent p.V1878V 0.55 TCGA-86-8054-01 7 121659224 121659224 G T PTPRZ1 Silent p.G1630G 0.48 TCGA-86-8054-01 7 121773678 121773678 C T AASS Missense_Mutation p.A35T 0.04 tolerated(0.47) benign(0.108) TCGA-86-8054-01 7 134928143 134928143 A T STRA8 Missense_Mutation p.M134L 0.27 tolerated(0.56) benign(0.001) TCGA-86-8054-01 7 147092701 147092701 G T CNTNAP2 Missense_Mutation p.G500V 0.52 deleterious(0) benign(0.055) TCGA-86-8054-01 7 150269316 150269316 G A GIMAP4 Missense_Mutation p.R53Q 0.06 tolerated(0.17) benign(0.009) TCGA-86-8054-01 7 15584448 15584448 C A AGMO Missense_Mutation p.A120S 0.29 tolerated(0.34) benign(0.007) TCGA-86-8054-01 7 156798303 156798303 C A MNX1 Missense_Mutation p.G373C 0.36 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-86-8054-01 7 20738104 20738104 G A ABCB5 Silent p.G695G 0.20 TCGA-86-8054-01 7 2952980 2952980 G A CARD11 Missense_Mutation p.T987M 0.26 tolerated(0.08) benign(0.199) TCGA-86-8054-01 7 4899599 4899599 C A PAPOLB Missense_Mutation p.V614F 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.482) TCGA-86-8054-01 7 57529006 57529006 G T ZNF716 Missense_Mutation p.R280L 0.58 tolerated(0.25) benign(0.001) TCGA-86-8054-01 7 72657277 72657277 G T GTF2IRD2P1 RNA 0.23 TCGA-86-8054-01 7 813718 813718 G T HEATR2 Missense_Mutation p.K655N 0.47 tolerated(0.11) benign(0.013) TCGA-86-8054-01 7 82435124 82435124 G T PCLO Missense_Mutation p.P4938H 0.55 unknown(0) TCGA-86-8054-01 7 96651559 96651559 G T DLX5 Missense_Mutation p.Q160K 0.25 deleterious(0) benign(0.036) TCGA-86-8054-01 8 113569165 113569165 C G CSMD3 Missense_Mutation p.C1354S 0.16 deleterious(0.01) probably_damaging(0.985) TCGA-86-8054-01 8 121243756 121243756 A T COL14A1 Missense_Mutation p.S750C 0.19 deleterious(0) probably_damaging(1) TCGA-86-8054-01 8 126059501 126059501 C A KIAA0196 Missense_Mutation p.V818L 0.59 tolerated(0.13) benign(0.096) TCGA-86-8054-01 8 133851642 133851642 G T PHF20L1 Missense_Mutation p.W734C 0.19 tolerated(0.12) benign(0.028) TCGA-86-8054-01 8 133900463 133900463 T C TG Missense_Mutation p.V804A 0.24 tolerated(0.77) benign(0.004) TCGA-86-8054-01 8 133953674 133953674 C A TG Missense_Mutation p.P1707H 0.17 deleterious(0) possibly_damaging(0.847) TCGA-86-8054-01 8 141753392 141753392 C T PTK2 Missense_Mutation p.D558N 0.19 tolerated(0.11) benign(0.188) TCGA-86-8054-01 8 144889152 144889152 C A SCRIB Missense_Mutation p.G737V 0.66 probably_damaging(0.999) TCGA-86-8054-01 8 144990707 144990707 C G PLEC Missense_Mutation p.V4565L 0.66 probably_damaging(0.942) TCGA-86-8054-01 8 3432470 3432470 G C CSMD1 Missense_Mutation p.D447E 0.28 benign(0.003) TCGA-86-8054-01 8 41615561 41615561 C A ANK1 Missense_Mutation p.C74F 0.71 deleterious(0) probably_damaging(1) TCGA-86-8054-01 8 57905881 57905881 G A IMPAD1 Silent p.N88N 0.29 TCGA-86-8054-01 8 75262736 75262736 T A GDAP1 Missense_Mutation p.L14M 0.42 tolerated_low_confidence(0.15) possibly_damaging(0.69) TCGA-86-8054-01 8 77616573 77616573 G T ZFHX4 Nonsense_Mutation p.E84* 0.34 TCGA-86-8054-01 8 77764181 77764181 C A ZFHX4 Missense_Mutation p.T1675N 0.48 possibly_damaging(0.607) TCGA-86-8054-01 8 95677174 95677174 C G ESRP1 Missense_Mutation p.L259V 0.17 deleterious(0) probably_damaging(0.968) TCGA-86-8054-01 9 101544759 101544759 C A ANKS6 Silent p.L403L 0.31 TCGA-86-8054-01 9 102677582 102677582 A G STX17 Missense_Mutation p.I21V 0.27 tolerated(0.38) benign(0.002) TCGA-86-8054-01 9 115983482 115983482 C A FKBP15 Silent p.S14S 0.27 TCGA-86-8054-01 9 117029830 117029830 G T COL27A1 Missense_Mutation p.G1165V 0.17 probably_damaging(0.999) TCGA-86-8054-01 9 119903723 119903723 G T ASTN2 Intron 0.49 TCGA-86-8054-01 9 132630558 132630558 C T USP20 Missense_Mutation p.S322F 0.25 deleterious(0.01) possibly_damaging(0.855) TCGA-86-8054-01 9 139835797 139835797 C A FBXW5 Nonsense_Mutation p.E455* 0.26 TCGA-86-8054-01 9 140846786 140846786 G T CACNA1B Missense_Mutation p.G343C 0.27 deleterious(0.03) probably_damaging(0.943) TCGA-86-8054-01 9 16437384 16437384 C G BNC2 Missense_Mutation p.A270P 0.21 deleterious(0.03) probably_damaging(0.973) TCGA-86-8054-01 9 34661908 34661908 C T CCL27 3'UTR 0.13 TCGA-86-8054-01 9 8341719 8341719 C A PTPRD Missense_Mutation p.V1641F 0.28 deleterious(0) probably_damaging(0.981) TCGA-86-8054-01 9 94488962 94488962 A T ROR2 Missense_Mutation p.L416Q 0.21 deleterious(0) probably_damaging(0.921) TCGA-86-8054-01 9 99694285 99694285 T A NUTM2G Missense_Mutation p.L100M 0.24 deleterious(0.03) probably_damaging(0.987) TCGA-86-8054-01 X 119505007 119505007 C A ATP1B4 Missense_Mutation p.N168K 0.79 deleterious(0) probably_damaging(1) TCGA-86-8054-01 X 24741379 24741379 G A POLA1 Missense_Mutation p.E393K 0.66 tolerated(0.11) benign(0.119) TCGA-86-8054-01 X 35970046 35970046 C T CXorf22 Nonsense_Mutation p.Q338* 0.66 TCGA-86-8054-01 X 47432258 47432258 G T SYN1 3'UTR 0.76 TCGA-86-8054-01 X 54783794 54783794 G A ITIH6 Missense_Mutation p.P905S 0.74 tolerated(0.53) benign(0) TCGA-86-8054-01 X 68749486 68749486 A C FAM155B Missense_Mutation p.K369T 0.27 tolerated(0.22) benign(0.002) TCGA-86-8054-01 X 70836210 70836210 C T CXCR3 3'UTR 0.36 TCGA-86-8055-01 10 48414310 48414310 T C GDF2 Silent p.T186T 0.06 TCGA-86-8055-01 11 250829 250829 G C PSMD13 Missense_Mutation p.Q269H 0.29 tolerated(0.08) benign(0.382) TCGA-86-8055-01 11 66083663 66083663 G A CD248 Missense_Mutation p.P279L 0.08 deleterious(0.02) benign(0.028) TCGA-86-8055-01 12 120128095 120128095 C T CIT Missense_Mutation p.R2016H 0.09 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-86-8055-01 12 125834848 125834848 C G TMEM132B Silent p.V301V 0.07 TCGA-86-8055-01 12 132393755 132393755 G T ULK1 Missense_Mutation p.Q213H 0.10 deleterious(0) probably_damaging(0.998) TCGA-86-8055-01 12 56030844 56030844 T A OR10P1 Missense_Mutation p.S57T 0.03 tolerated(1) benign(0.002) TCGA-86-8055-01 13 39588005 39588005 G A PROSER1 Missense_Mutation p.L462F 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.732) TCGA-86-8055-01 15 91453343 91453343 C G MAN2A2 Missense_Mutation p.D466E 0.04 tolerated(0.12) benign(0.061) TCGA-86-8055-01 16 1259365 1259365 G A CACNA1H Missense_Mutation p.D1233N 0.10 tolerated(0.24) probably_damaging(0.91) TCGA-86-8055-01 16 21145723 21145723 G A DNAH3 Silent p.S313S 0.10 TCGA-86-8055-01 16 88599208 88599208 A G ZFPM1 Missense_Mutation p.S352G 0.12 tolerated(0.72) benign(0.042) TCGA-86-8055-01 16 88744934 88744934 G A SNAI3 Silent p.C267C 0.05 TCGA-86-8055-01 17 47904072 47904072 G T KAT7 Missense_Mutation p.A549S 0.07 deleterious(0.04) probably_damaging(0.973) TCGA-86-8055-01 17 47904073 47904073 C T KAT7 Missense_Mutation p.A549V 0.07 deleterious(0) probably_damaging(0.988) TCGA-86-8055-01 17 73895713 73895713 C T MRPL38 Silent p.T251T 0.23 TCGA-86-8055-01 17 7578443 7578443 A G TP53 Missense_Mutation p.Y163H 0.24 deleterious(0) probably_damaging(0.999) TCGA-86-8055-01 18 18622538 18622538 C T ROCK1 Missense_Mutation p.E270K 0.36 deleterious(0.01) benign(0.383) TCGA-86-8055-01 18 28991130 28991130 G A DSG4 Missense_Mutation p.V711I 0.12 tolerated(0.47) benign(0) TCGA-86-8055-01 19 16008253 16008253 G C CYP4F2 Missense_Mutation p.R57G 0.07 deleterious(0.03) benign(0.023) TCGA-86-8055-01 19 39435614 39435614 G A CTC-360G5.8 Nonsense_Mutation p.R135* 0.09 TCGA-86-8055-01 19 52394871 52394871 T G ZNF649 Missense_Mutation p.N173T 0.10 tolerated(0.3) benign(0.003) TCGA-86-8055-01 19 54254543 54254543 G A MIR522 RNA 0.21 TCGA-86-8055-01 19 9048402 9048402 G T MUC16 Missense_Mutation p.H11077N 0.11 benign(0.003) TCGA-86-8055-01 1 101440446 101440446 C G SLC30A7 3'UTR 0.08 TCGA-86-8055-01 1 151259298 151259298 G T ZNF687 Silent p.L177L 0.07 TCGA-86-8055-01 1 156555578 156555578 G A TTC24 Silent p.T510T 0.04 TCGA-86-8055-01 1 228295983 228295983 C A MRPL55 5'UTR 0.11 TCGA-86-8055-01 1 75038777 75038777 C G C1orf173 Missense_Mutation p.D873H 0.31 deleterious(0.02) probably_damaging(0.931) TCGA-86-8055-01 20 33851652 33851652 C G MMP24 Missense_Mutation p.H292Q 0.25 deleterious(0) probably_damaging(0.923) TCGA-86-8055-01 22 37482363 37482363 G A TMPRSS6 Silent p.Y320Y 0.20 TCGA-86-8055-01 22 43289489 43289489 C T PACSIN2 Missense_Mutation p.R64Q 0.18 deleterious(0) benign(0.201) TCGA-86-8055-01 2 179403878 179403878 T A TTN Missense_Mutation p.R32928S 0.07 TCGA-86-8055-01 2 189864281 189864281 G A COL3A1 Missense_Mutation p.S736N 0.12 unknown(0) TCGA-86-8055-01 2 201437932 201437932 C A SGOL2 Missense_Mutation p.Q955K 0.05 tolerated(0.09) possibly_damaging(0.768) TCGA-86-8055-01 2 201741737 201741737 A C PPIL3 Silent p.S92S 0.36 TCGA-86-8055-01 2 90108951 90108951 C G IGKV6D-41 Silent p.S72S 0.09 TCGA-86-8055-01 3 132441200 132441200 G A NPHP3 5'UTR 0.33 TCGA-86-8055-01 3 40502966 40502966 G A RPL14 Missense_Mutation p.R90Q 0.10 tolerated(0.22) benign(0.189) TCGA-86-8055-01 4 186294019 186294019 A C LRP2BP Missense_Mutation p.F265C 0.08 deleterious(0.01) probably_damaging(0.948) TCGA-86-8055-01 4 68529644 68529644 T G UBA6 Missense_Mutation p.K307Q 0.14 tolerated(0.51) benign(0.028) TCGA-86-8055-01 5 140865302 140865302 G A PCDHGC4 Missense_Mutation p.G188S 0.10 deleterious(0.01) possibly_damaging(0.903) TCGA-86-8055-01 5 140890603 140890603 G A PCDHGB6 Missense_Mutation p.V886M 0.07 deleterious(0) possibly_damaging(0.814) TCGA-86-8055-01 5 170863180 170863180 G A FGF18 Silent p.Q51Q 0.07 TCGA-86-8055-01 5 170863216 170863216 G A FGF18 Silent p.G63G 0.10 TCGA-86-8055-01 5 38427311 38427311 G A EGFLAM Missense_Mutation p.V671M 0.12 deleterious(0.03) probably_damaging(0.993) TCGA-86-8055-01 5 71492074 71492074 G A MAP1B Silent p.V964V 0.21 TCGA-86-8055-01 5 72858614 72858614 T G ANKRA2 Missense_Mutation p.K31N 0.06 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-86-8055-01 5 79746335 79746335 G A ZFYVE16 Silent p.L1104L 0.16 TCGA-86-8055-01 6 29455436 29455436 C G MAS1L Missense_Mutation p.A82P 0.27 tolerated(0.15) benign(0.178) TCGA-86-8055-01 6 38858534 38858534 T G DNAH8 Silent p.T2643T 0.32 TCGA-86-8055-01 7 124386617 124386617 C T GPR37 Missense_Mutation p.E602K 0.09 deleterious(0) probably_damaging(0.955) TCGA-86-8055-01 7 132069983 132069983 A T PLXNA4 Intron 0.09 TCGA-86-8055-01 7 27203156 27203156 G T HOXA9 3'UTR 0.04 TCGA-86-8055-01 7 45014808 45014808 G A MYO1G Missense_Mutation p.H195Y 0.09 deleterious(0.03) probably_damaging(0.996) TCGA-86-8055-01 7 55259515 55259515 T G EGFR Missense_Mutation p.L858R 0.70 deleterious(0) probably_damaging(1) TCGA-86-8055-01 8 144994957 144994957 G C PLEC Missense_Mutation p.A3148G 0.22 possibly_damaging(0.622) TCGA-86-8055-01 8 27296909 27296909 A T PTK2B Missense_Mutation p.M610L 0.19 deleterious(0.04) probably_damaging(0.981) TCGA-86-8055-01 8 27296911 27296911 G T PTK2B Missense_Mutation p.M610I 0.18 deleterious(0) probably_damaging(0.991) TCGA-86-8055-01 8 2836188 2836188 C A CSMD1 Missense_Mutation p.A2838S 0.25 benign(0.138) TCGA-86-8055-01 8 75156810 75156810 G A JPH1 Missense_Mutation p.P620L 0.24 tolerated(0.41) benign(0.001) TCGA-86-8055-01 X 23019710 23019710 C T DDX53 Silent p.D512D 0.33 TCGA-86-8055-01 X 27765086 27765086 A T DCAF8L2 Missense_Mutation p.E25V 0.30 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-86-8056-01 10 100904092 100904092 A C HPSE2 Missense_Mutation p.D171E 0.28 tolerated(0.25) probably_damaging(0.997) TCGA-86-8056-01 10 103588909 103588909 C T KCNIP2 Missense_Mutation p.E106K 0.13 deleterious(0.01) benign(0.401) TCGA-86-8056-01 10 115602234 115602234 C A DCLRE1A Nonsense_Mutation p.E845* 0.20 TCGA-86-8056-01 10 115609009 115609009 C T DCLRE1A Missense_Mutation p.E619K 0.12 tolerated(0.06) benign(0.367) TCGA-86-8056-01 10 119798913 119798913 C G RAB11FIP2 Missense_Mutation p.D279H 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-86-8056-01 10 24924006 24924006 T C ARHGAP21 Missense_Mutation p.M99V 0.21 deleterious(0) possibly_damaging(0.505) TCGA-86-8056-01 10 3827239 3827239 G C KLF6 5'UTR 0.10 TCGA-86-8056-01 10 43882851 43882851 G A HNRNPF Missense_Mutation p.S161L 0.13 deleterious(0) probably_damaging(0.999) TCGA-86-8056-01 10 50681630 50681630 G A ERCC6 Silent p.L868L 0.27 TCGA-86-8056-01 10 5247726 5247726 G T AKR1C4 Nonsense_Mutation p.E126* 0.11 TCGA-86-8056-01 10 72289041 72289041 C T PALD1 Missense_Mutation p.T81M 0.41 deleterious(0.02) possibly_damaging(0.888) TCGA-86-8056-01 10 79767532 79767532 G A POLR3A Silent p.L668L 0.26 TCGA-86-8056-01 10 858900 858900 C T LARP4B Missense_Mutation p.R728Q 0.13 deleterious(0) benign(0.195) TCGA-86-8056-01 11 100064354 100064354 G A CNTN5 Missense_Mutation p.D615N 0.32 tolerated(0.12) benign(0.013) TCGA-86-8056-01 11 1020113 1020113 G A MUC6 Missense_Mutation p.S1262F 0.13 unknown(0) TCGA-86-8056-01 11 110035449 110035449 C G ZC3H12C Missense_Mutation p.H547D 0.15 tolerated(0.12) possibly_damaging(0.889) TCGA-86-8056-01 11 116706935 116706937 CTT - APOA1 In_Frame_Del p.K131del 0.24 TCGA-86-8056-01 11 117299194 117299194 C A DSCAML1 Silent p.P2064P 0.32 TCGA-86-8056-01 11 122930706 122930706 C T HSPA8 Missense_Mutation p.D199N 0.10 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-86-8056-01 11 123848020 123848020 A T OR10S1 Missense_Mutation p.F127I 0.19 deleterious(0) probably_damaging(0.995) TCGA-86-8056-01 11 123900953 123900953 C A OR10G8 Silent p.G208G 0.15 TCGA-86-8056-01 11 124120926 124120926 C T OR8G1 Silent p.F168F 0.26 TCGA-86-8056-01 11 19955042 19955042 G A NAV2 Missense_Mutation p.E441K 0.15 tolerated_low_confidence(0.33) benign(0.257) TCGA-86-8056-01 11 20122656 20122656 G T NAV2 Nonsense_Mutation p.E2178* 0.25 TCGA-86-8056-01 11 3848888 3848888 G C RHOG Missense_Mutation p.Q161E 0.14 deleterious(0) benign(0.055) TCGA-86-8056-01 11 407553 407553 T A SIGIRR Missense_Mutation p.D166V 0.18 deleterious(0) probably_damaging(0.972) TCGA-86-8056-01 11 489407 489407 A T PTDSS2 Missense_Mutation p.M288L 0.30 tolerated(0.43) benign(0.006) TCGA-86-8056-01 11 56058169 56058169 C A OR8H1 Missense_Mutation p.A124S 0.28 deleterious(0) probably_damaging(0.999) TCGA-86-8056-01 11 58190335 58190335 T C OR5B2 Missense_Mutation p.M134V 0.17 deleterious_low_confidence(0.04) benign(0.057) TCGA-86-8056-01 11 5878314 5878315 - A OR52E8 Frame_Shift_Ins p.G207Wfs*66 0.21 TCGA-86-8056-01 11 60183680 60183680 T A MS4A14 Missense_Mutation p.H446Q 0.26 tolerated(1) benign(0) TCGA-86-8056-01 11 62652675 62652675 C T SLC3A2 Missense_Mutation p.S384F 0.14 deleterious(0.02) benign(0.147) TCGA-86-8056-01 11 64418769 64418769 G T NRXN2 Nonsense_Mutation p.S959* 0.24 TCGA-86-8056-01 11 64522998 64522998 C T PYGM Silent p.V231V 0.21 TCGA-86-8056-01 11 67434391 67434391 G T ALDH3B2 Silent p.R6R 0.22 TCGA-86-8056-01 11 71153345 71153345 C A DHCR7 Missense_Mutation p.V126L 0.22 deleterious(0.04) benign(0.089) TCGA-86-8056-01 11 72319722 72319722 G A PDE2A Missense_Mutation p.A73V 0.15 tolerated_low_confidence(0.13) benign(0.118) TCGA-86-8056-01 11 73584229 73584229 C G COA4 Missense_Mutation p.M65I 0.16 deleterious(0.03) possibly_damaging(0.622) TCGA-86-8056-01 11 73584372 73584372 C G COA4 Missense_Mutation p.D18H 0.13 deleterious(0.02) benign(0.121) TCGA-86-8056-01 11 76873997 76873997 C T MYO7A Silent p.I551I 0.25 TCGA-86-8056-01 11 89885588 89885588 G C NAALAD2 Missense_Mutation p.Q244H 0.09 deleterious(0) probably_damaging(1) TCGA-86-8056-01 12 121854012 121854012 C T RNF34 Silent p.V20V 0.11 TCGA-86-8056-01 12 122396346 122396346 G T WDR66 Missense_Mutation p.W633C 0.11 deleterious(0) probably_damaging(1) TCGA-86-8056-01 12 132685678 132685678 C T GALNT9 Silent p.T98T 0.07 TCGA-86-8056-01 12 20522653 20522653 G T PDE3A Missense_Mutation p.W145C 0.24 tolerated(0.06) probably_damaging(0.99) TCGA-86-8056-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.14 deleterious(0) benign(0.361) TCGA-86-8056-01 12 29423429 29423429 C T FAR2 Missense_Mutation p.T16M 0.32 deleterious(0) probably_damaging(1) TCGA-86-8056-01 12 29640781 29640781 C A OVCH1 Missense_Mutation p.G246V 0.36 tolerated(0.26) benign(0.075) TCGA-86-8056-01 12 44782154 44782154 G T TMEM117 Missense_Mutation p.G415V 0.23 deleterious(0) probably_damaging(0.999) TCGA-86-8056-01 12 48736790 48736790 C T ZNF641 Missense_Mutation p.R428Q 0.19 tolerated(0.33) benign(0.13) TCGA-86-8056-01 12 537956 537956 G C CCDC77 Missense_Mutation p.K145N 0.17 deleterious(0) benign(0.35) TCGA-86-8056-01 12 56583258 56583258 G C SMARCC2 5'UTR 0.20 TCGA-86-8056-01 12 57584591 57584591 C T LRP1 Silent p.L2345L 0.12 TCGA-86-8056-01 12 6635510 6635510 G C NCAPD2 Missense_Mutation p.E847Q 0.15 tolerated(0.48) benign(0.14) TCGA-86-8056-01 12 66698733 66698733 C T HELB Missense_Mutation p.S137F 0.42 deleterious(0) benign(0.332) TCGA-86-8056-01 12 72388301 72388301 G T TPH2 Missense_Mutation p.A342S 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-86-8056-01 12 78594363 78594363 G C NAV3 Missense_Mutation p.G2254R 0.25 deleterious(0) probably_damaging(1) TCGA-86-8056-01 13 25068839 25068839 T G PARP4 Missense_Mutation p.K205Q 0.33 tolerated(0.29) benign(0.039) TCGA-86-8056-01 13 33247449 33247449 C T PDS5B Missense_Mutation p.H268Y 0.06 deleterious(0.03) benign(0.02) TCGA-86-8056-01 13 38158179 38158179 T A POSTN Missense_Mutation p.Q390H 0.27 deleterious(0) probably_damaging(0.999) TCGA-86-8056-01 13 41705320 41705320 C T KBTBD6 Missense_Mutation p.R443Q 0.08 deleterious(0.02) possibly_damaging(0.627) TCGA-86-8056-01 13 43839533 43839533 C T ENOX1 Splice_Site p.X537_splice 0.13 TCGA-86-8056-01 13 44456390 44456390 A G LACC1 Missense_Mutation p.N211S 0.23 deleterious(0) probably_damaging(0.989) TCGA-86-8056-01 13 45589121 45589121 G A GPALPP1 Missense_Mutation p.G148E 0.15 deleterious(0) probably_damaging(1) TCGA-86-8056-01 13 48937091 48937091 G A RB1 Missense_Mutation p.E287K 0.15 deleterious(0) possibly_damaging(0.459) TCGA-86-8056-01 13 61985537 61985537 C A PCDH20 Missense_Mutation p.G899C 0.24 deleterious(0.01) benign(0.026) TCGA-86-8056-01 14 20215982 20215982 C A OR4Q3 Silent p.R132R 0.40 TCGA-86-8056-01 14 52978011 52978011 A G TXNDC16 Silent p.L235L 0.35 TCGA-86-8056-01 14 94953816 94953816 C G SERPINA12 Missense_Mutation p.E357Q 0.18 tolerated(0.6) possibly_damaging(0.505) TCGA-86-8056-01 15 101114156 101114156 G A LINS Missense_Mutation p.L308F 0.17 deleterious(0) probably_damaging(1) TCGA-86-8056-01 15 35529693 35529693 C G ANP32AP1 RNA 0.11 TCGA-86-8056-01 15 43044340 43044340 G A TTBK2 Missense_Mutation p.S1035L 0.13 tolerated(0.2) benign(0.064) TCGA-86-8056-01 15 70979953 70979953 C T UACA Silent p.Q176Q 0.04 TCGA-86-8056-01 15 73616125 73616125 G T HCN4 Missense_Mutation p.T770K 0.32 tolerated(0.16) unknown(0) TCGA-86-8056-01 15 74176575 74176575 G T TBC1D21 Missense_Mutation p.R119L 0.25 deleterious(0.02) benign(0.112) TCGA-86-8056-01 15 75119126 75119126 G C CPLX3 Missense_Mutation p.D28H 0.10 deleterious(0.02) benign(0.287) TCGA-86-8056-01 15 75189909 75189909 C T MPI Silent p.L370L 0.14 TCGA-86-8056-01 16 24834925 24834925 G A TNRC6A Missense_Mutation p.D1896N 0.06 deleterious(0.01) possibly_damaging(0.866) TCGA-86-8056-01 16 27518426 27518426 C A GTF3C1 Missense_Mutation p.V432L 0.24 tolerated(0.2) benign(0.169) TCGA-86-8056-01 16 28842045 28842045 C T ATXN2L Missense_Mutation p.R382C 0.18 deleterious(0.02) benign(0.007) TCGA-86-8056-01 16 3073336 3073336 G C HCFC1R1 Missense_Mutation p.S60C 0.24 deleterious_low_confidence(0) possibly_damaging(0.799) TCGA-86-8056-01 16 31138594 31138594 T A KAT8 Missense_Mutation p.Y201N 0.28 deleterious(0) probably_damaging(0.997) TCGA-86-8056-01 16 50136212 50136212 T C HEATR3 Missense_Mutation p.S596P 0.28 deleterious(0.02) possibly_damaging(0.701) TCGA-86-8056-01 16 57144676 57144676 G A CPNE2 Missense_Mutation p.G8S 0.36 tolerated(0.31) possibly_damaging(0.855) TCGA-86-8056-01 16 76569643 76569643 G A CNTNAP4 Missense_Mutation p.C913Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-86-8056-01 16 88779033 88779033 T A CTU2 Missense_Mutation p.F153I 0.22 deleterious(0.03) benign(0.265) TCGA-86-8056-01 16 88870299 88870299 C T CDT1 Silent p.I20I 0.20 TCGA-86-8056-01 17 18882043 18882043 G C FAM83G Silent p.L312L 0.17 TCGA-86-8056-01 17 27049502 27049502 G A RPL23A Intron 0.13 TCGA-86-8056-01 17 27425140 27425140 C G MYO18A Missense_Mutation p.E1325Q 0.10 deleterious(0.02) possibly_damaging(0.809) TCGA-86-8056-01 17 43924091 43924091 G T SPPL2C Missense_Mutation p.A607S 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.601) TCGA-86-8056-01 17 46266827 46266827 C G SKAP1 Missense_Mutation p.D106H 0.11 tolerated(0.19) benign(0.036) TCGA-86-8056-01 17 59533876 59533876 G A TBX4 Missense_Mutation p.E9K 0.25 tolerated_low_confidence(0.05) possibly_damaging(0.905) TCGA-86-8056-01 17 7578419 7578419 C T TP53 Missense_Mutation p.E171K 0.31 deleterious(0.03) possibly_damaging(0.738) TCGA-86-8056-01 17 80545122 80545122 C G FOXK2 Missense_Mutation p.T587S 0.12 tolerated(0.15) benign(0.027) TCGA-86-8056-01 18 19154713 19154713 G C ESCO1 Missense_Mutation p.S31C 0.04 deleterious(0) probably_damaging(0.979) TCGA-86-8056-01 18 19426986 19426986 G A MIB1 Missense_Mutation p.D765N 0.17 deleterious(0.02) possibly_damaging(0.826) TCGA-86-8056-01 18 21453001 21453001 G A LAMA3 Intron 0.16 TCGA-86-8056-01 18 22805910 22805910 C G ZNF521 Missense_Mutation p.D658H 0.08 deleterious(0.01) probably_damaging(0.956) TCGA-86-8056-01 18 30950013 30950013 C A CCDC178 Splice_Site p.X116_splice 0.23 TCGA-86-8056-01 18 31709978 31709978 C A NOL4 Missense_Mutation p.V91L 0.19 tolerated(0.8) probably_damaging(0.997) TCGA-86-8056-01 18 44013218 44013218 C A RNF165 Missense_Mutation p.P43T 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.517) TCGA-86-8056-01 18 45567211 45567211 C G ZBTB7C Missense_Mutation p.E90Q 0.06 deleterious(0) probably_damaging(0.982) TCGA-86-8056-01 18 59855231 59855231 G A KIAA1468 Missense_Mutation p.E165K 0.10 tolerated_low_confidence(0.06) benign(0.108) TCGA-86-8056-01 19 10753982 10753982 C T SLC44A2 Missense_Mutation p.S681L 0.32 deleterious(0) possibly_damaging(0.673) TCGA-86-8056-01 19 10941718 10941718 G T DNM2 Missense_Mutation p.D870Y 0.10 deleterious_low_confidence(0) unknown(0) TCGA-86-8056-01 19 1257182 1257182 G C MIDN Missense_Mutation p.E440Q 0.11 tolerated_low_confidence(0.07) possibly_damaging(0.557) TCGA-86-8056-01 19 12991789 12991789 G T DNASE2 Missense_Mutation p.S88R 0.11 tolerated(0.06) possibly_damaging(0.477) TCGA-86-8056-01 19 1506262 1506262 C T ADAMTSL5 Missense_Mutation p.E390K 0.09 deleterious(0.01) possibly_damaging(0.88) TCGA-86-8056-01 19 15281203 15281203 C T NOTCH3 Missense_Mutation p.D1685N 0.28 tolerated(0.23) benign(0.297) TCGA-86-8056-01 19 15299870 15299870 C A NOTCH3 Silent p.L436L 0.21 TCGA-86-8056-01 19 15567331 15567331 A T RASAL3 Missense_Mutation p.Y520N 0.08 deleterious(0) probably_damaging(1) TCGA-86-8056-01 19 16186908 16186908 G T TPM4 Nonsense_Mutation p.E56* 0.36 TCGA-86-8056-01 19 16980277 16980277 G C SIN3B Missense_Mutation p.E637Q 0.16 deleterious(0.02) benign(0.066) TCGA-86-8056-01 19 2878354 2878354 C T ZNF556 3'UTR 0.08 TCGA-86-8056-01 19 30936377 30936377 C A ZNF536 Nonsense_Mutation p.C636* 0.24 TCGA-86-8056-01 19 36050048 36050048 C T ATP4A Missense_Mutation p.V368M 0.21 deleterious(0.03) probably_damaging(0.959) TCGA-86-8056-01 19 37211364 37211364 C G ZNF567 Missense_Mutation p.Q549E 0.13 deleterious(0.01) probably_damaging(0.971) TCGA-86-8056-01 19 39340508 39340508 C T HNRNPL Silent p.V33V 0.17 TCGA-86-8056-01 19 42132011 42132011 C A CEACAM4 Missense_Mutation p.D130Y 0.29 deleterious(0.05) possibly_damaging(0.788) TCGA-86-8056-01 19 42584491 42584491 C T ZNF574 Missense_Mutation p.P578L 0.16 tolerated(0.41) possibly_damaging(0.908) TCGA-86-8056-01 19 42798364 42798364 G T CIC Missense_Mutation p.R1412L 0.31 probably_damaging(0.931) TCGA-86-8056-01 19 43013378 43013378 C T CEACAM1 Missense_Mutation p.M488I 0.08 tolerated(0.68) benign(0.38) TCGA-86-8056-01 19 46520276 46520276 C T CCDC61 Missense_Mutation p.S420F 0.13 deleterious(0) probably_damaging(0.919) TCGA-86-8056-01 19 48244549 48244549 G A EHD2 Missense_Mutation p.D498N 0.26 deleterious(0) probably_damaging(0.999) TCGA-86-8056-01 19 48737743 48737743 G T CARD8 Missense_Mutation p.F89L 0.12 tolerated_low_confidence(0.35) benign(0.012) TCGA-86-8056-01 19 49228113 49228113 C G RASIP1 Missense_Mutation p.L744F 0.10 deleterious(0.01) benign(0.368) TCGA-86-8056-01 19 49684627 49684627 C T TRPM4 Missense_Mutation p.S391L 0.15 deleterious(0.03) benign(0.142) TCGA-86-8056-01 19 50962539 50962539 G A MYBPC2 Missense_Mutation p.A923T 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-86-8056-01 19 51465057 51465057 C G KLK6 Missense_Mutation p.Q175H 0.16 deleterious(0.03) benign(0.033) TCGA-86-8056-01 19 5265144 5265144 C A PTPRS Missense_Mutation p.R148L 0.20 tolerated(0.05) possibly_damaging(0.549) TCGA-86-8056-01 19 52659392 52659392 C T ZNF836 Missense_Mutation p.R515Q 0.26 tolerated(0.73) benign(0.2) TCGA-86-8056-01 19 53884180 53884180 C G ZNF525 Missense_Mutation p.I116M 0.10 tolerated(0.11) probably_damaging(0.996) TCGA-86-8056-01 19 5456135 5456135 A C ZNRF4 Silent p.S211S 0.05 TCGA-86-8056-01 19 54649349 54649349 G T CNOT3 Nonsense_Mutation p.E167* 0.06 TCGA-86-8056-01 19 55494186 55494186 G A NLRP2 Missense_Mutation p.D374N 0.20 deleterious(0) possibly_damaging(0.886) TCGA-86-8056-01 19 5711936 5711936 G C LONP1 Nonsense_Mutation p.S239* 0.16 TCGA-86-8056-01 19 57325408 57325408 G T PEG3 Missense_Mutation p.P1468T 0.28 deleterious(0.02) possibly_damaging(0.879) TCGA-86-8056-01 19 58806613 58806613 C G ZNF8 Missense_Mutation p.S480C 0.13 deleterious(0) probably_damaging(0.997) TCGA-86-8056-01 19 643278 643278 C G FGF22 Missense_Mutation p.I86M 0.10 deleterious(0.04) possibly_damaging(0.588) TCGA-86-8056-01 19 7184613 7184613 C A INSR Missense_Mutation p.A230S 0.22 tolerated(0.73) benign(0.002) TCGA-86-8056-01 19 9087336 9087336 G T MUC16 Silent p.S1493S 0.31 TCGA-86-8056-01 1 111494244 111494244 G C LRIF1 Missense_Mutation p.S421C 0.10 deleterious(0.01) probably_damaging(0.938) TCGA-86-8056-01 1 111495032 111495032 T A LRIF1 Missense_Mutation p.K158N 0.37 tolerated(0.8) benign(0) TCGA-86-8056-01 1 145537233 145537233 C T ITGA10 Nonsense_Mutation p.Q802* 0.13 TCGA-86-8056-01 1 152009453 152009453 G C S100A11 5'UTR 0.11 TCGA-86-8056-01 1 152277068 152277068 C G FLG Missense_Mutation p.D3432H 0.11 unknown(0) TCGA-86-8056-01 1 152281355 152281355 C G FLG Missense_Mutation p.E2003Q 0.07 possibly_damaging(0.728) TCGA-86-8056-01 1 152329108 152329108 G A FLG2 Missense_Mutation p.S385F 0.17 unknown(0) TCGA-86-8056-01 1 154991049 154991049 G A DCST2 Missense_Mutation p.P765S 0.10 tolerated_low_confidence(0.37) unknown(0) TCGA-86-8056-01 1 159021577 159021577 G C IFI16 Missense_Mutation p.E536Q 0.04 tolerated(0.07) benign(0.156) TCGA-86-8056-01 1 16256495 16256495 G C SPEN Missense_Mutation p.D1254H 0.09 probably_damaging(0.94) TCGA-86-8056-01 1 16257455 16257455 G A SPEN Missense_Mutation p.D1574N 0.16 possibly_damaging(0.505) TCGA-86-8056-01 1 176564596 176564596 A G PAPPA2 Missense_Mutation p.Y619C 0.31 deleterious(0.04) probably_damaging(0.979) TCGA-86-8056-01 1 200950154 200950154 C T KIF21B Missense_Mutation p.E1305K 0.33 deleterious(0) probably_damaging(0.997) TCGA-86-8056-01 1 205238648 205238648 G C TMCC2 Missense_Mutation p.D440H 0.15 deleterious(0) probably_damaging(0.989) TCGA-86-8056-01 1 205238713 205238713 G A TMCC2 Silent p.L461L 0.17 TCGA-86-8056-01 1 205628639 205628639 C A SLC45A3 Missense_Mutation p.G462V 0.30 tolerated(0.46) benign(0.007) TCGA-86-8056-01 1 205628640 205628640 C A SLC45A3 Missense_Mutation p.G462W 0.32 deleterious(0.01) possibly_damaging(0.821) TCGA-86-8056-01 1 207196454 207196454 C G C1orf116 Missense_Mutation p.E219Q 0.27 tolerated(0.24) benign(0.357) TCGA-86-8056-01 1 208252706 208252706 C T PLXNA2 Missense_Mutation p.E829K 0.14 tolerated(0.15) benign(0.321) TCGA-86-8056-01 1 22079057 22079057 G A USP48 Nonsense_Mutation p.Q210* 0.21 TCGA-86-8056-01 1 221054701 221054701 A G HLX Missense_Mutation p.Q253R 0.31 deleterious(0.02) benign(0.209) TCGA-86-8056-01 1 228333325 228333325 C T GUK1 Missense_Mutation p.H59Y 0.15 deleterious(0) probably_damaging(0.985) TCGA-86-8056-01 1 228560378 228560378 C T OBSCN Missense_Mutation p.S8257F 0.21 possibly_damaging(0.885) TCGA-86-8056-01 1 233388215 233388215 G T PCNXL2 Silent p.I671I 0.26 TCGA-86-8056-01 1 237777789 237777789 C G RYR2 Silent p.L1787L 0.09 TCGA-86-8056-01 1 246078861 246078861 C T SMYD3 Missense_Mutation p.D262N 0.27 tolerated(0.12) benign(0.051) TCGA-86-8056-01 1 28081709 28081709 C T FAM76A Silent p.F235F 0.10 TCGA-86-8056-01 1 32745748 32745748 G C LCK Missense_Mutation p.D422H 0.07 deleterious(0) probably_damaging(0.999) TCGA-86-8056-01 1 41213203 41213203 C T NFYC Intron 0.19 TCGA-86-8056-01 1 41213214 41213214 C T NFYC Silent p.F38F 0.17 TCGA-86-8056-01 1 41285914 41285914 G A KCNQ4 Silent p.P341P 0.09 TCGA-86-8056-01 1 42048678 42048678 C G HIVEP3 Missense_Mutation p.L597F 0.21 probably_damaging(0.999) TCGA-86-8056-01 1 47014887 47014887 G T KNCN Silent p.S68S 0.29 TCGA-86-8056-01 1 52902467 52902467 T C ZCCHC11 Silent p.P1374P 0.25 TCGA-86-8056-01 1 66102024 66102024 C G LEPR Missense_Mutation p.L942V 0.11 tolerated(0.05) benign(0.049) TCGA-86-8056-01 1 70446061 70446061 G T LRRC7 Splice_Site p.X200_splice 0.27 TCGA-86-8056-01 1 76260254 76260254 G T RABGGTB Missense_Mutation p.Q305H 0.29 deleterious(0.04) benign(0.162) TCGA-86-8056-01 1 92573521 92573521 G A BTBD8 Missense_Mutation p.D209N 0.06 tolerated(0.61) benign(0.034) TCGA-86-8056-01 1 99772614 99772614 G T LPPR4 3'UTR 0.14 TCGA-86-8056-01 20 13765723 13765723 G A NDUFAF5 Silent p.R3R 0.28 TCGA-86-8056-01 20 18377119 18377119 G T DZANK1 Missense_Mutation p.N536K 0.18 tolerated(0.11) benign(0.014) TCGA-86-8056-01 20 36022655 36022655 C T SRC Silent p.L176L 0.13 TCGA-86-8056-01 20 40827973 40827973 G T PTPRT Missense_Mutation p.P800T 0.26 tolerated(0.4) benign(0.086) TCGA-86-8056-01 20 41100956 41100956 G T PTPRT Missense_Mutation p.P467H 0.19 deleterious(0) possibly_damaging(0.725) TCGA-86-8056-01 20 46262832 46262832 C G NCOA3 Missense_Mutation p.F335L 0.26 deleterious(0) probably_damaging(0.998) TCGA-86-8056-01 20 47262451 47262451 C A PREX1 Missense_Mutation p.K1150N 0.14 tolerated(0.37) probably_damaging(0.96) TCGA-86-8056-01 20 7963152 7963152 C G TMX4 Missense_Mutation p.E266Q 0.39 deleterious(0.01) possibly_damaging(0.796) TCGA-86-8056-01 21 11058172 11058172 G T BAGE2 RNA 0.05 TCGA-86-8056-01 21 27141591 27141591 G T GABPA 3'UTR 0.33 TCGA-86-8056-01 21 35893820 35893820 T A RCAN1 Missense_Mutation p.Y188F 0.25 tolerated(0.61) probably_damaging(0.996) TCGA-86-8056-01 21 39087407 39087407 T A KCNJ6 Missense_Mutation p.D18V 0.35 deleterious_low_confidence(0.05) benign(0.032) TCGA-86-8056-01 21 43963652 43963652 G A SLC37A1 Missense_Mutation p.V224I 0.05 tolerated(1) benign(0.006) TCGA-86-8056-01 21 46689898 46689898 C G POFUT2 Missense_Mutation p.G290R 0.26 deleterious(0.01) possibly_damaging(0.812) TCGA-86-8056-01 21 47836585 47836585 G A PCNT Silent p.L2251L 0.14 TCGA-86-8056-01 22 30864591 30864591 C A SEC14L3 Missense_Mutation p.K109N 0.04 deleterious(0) benign(0.007) TCGA-86-8056-01 22 40415918 40415918 G T FAM83F Missense_Mutation p.V229F 0.28 deleterious(0.01) benign(0.434) TCGA-86-8056-01 22 45574442 45574442 C G NUP50 Missense_Mutation p.P222A 0.18 tolerated(0.13) benign(0.002) TCGA-86-8056-01 2 101598836 101598836 C G NPAS2 Silent p.V542V 0.11 TCGA-86-8056-01 2 118716040 118716040 A G CCDC93 Silent p.A302A 0.23 TCGA-86-8056-01 2 131985869 131985869 C G POTEE Missense_Mutation p.L324V 0.10 deleterious_low_confidence(0) possibly_damaging(0.694) TCGA-86-8056-01 2 135883796 135883796 C T RAB3GAP1 Silent p.I292I 0.20 TCGA-86-8056-01 2 152490372 152490372 C T NEB Silent p.Q3070Q 0.15 TCGA-86-8056-01 2 16082199 16082199 T A MYCN Missense_Mutation p.S5T 0.35 tolerated_low_confidence(1) benign(0) TCGA-86-8056-01 2 168099082 168099082 G A XIRP2 Missense_Mutation p.E394K 0.23 benign(0.031) TCGA-86-8056-01 2 168105001 168105001 C T XIRP2 Missense_Mutation p.P2367S 0.10 probably_damaging(0.947) TCGA-86-8056-01 2 169781270 169781270 C T ABCB11 Missense_Mutation p.R1221K 0.22 deleterious(0.05) possibly_damaging(0.859) TCGA-86-8056-01 2 171850230 171850230 C G TLK1 3'UTR 0.16 TCGA-86-8056-01 2 185803231 185803231 C T ZNF804A Silent p.I1036I 0.22 TCGA-86-8056-01 2 186672907 186672907 G C FSIP2 Missense_Mutation p.A6381P 0.27 benign(0.361) TCGA-86-8056-01 2 207175066 207175066 G A ZDBF2 Silent p.Q1938Q 0.07 TCGA-86-8056-01 2 209190838 209190838 G A PIKFYVE Silent p.R1101R 0.19 TCGA-86-8056-01 2 215301441 215301441 C T VWC2L Missense_Mutation p.P160L 0.25 deleterious(0) probably_damaging(0.994) TCGA-86-8056-01 2 219679801 219679801 G C CYP27A1 3'UTR 0.25 TCGA-86-8056-01 2 220089048 220089048 C T ATG9A Missense_Mutation p.E349K 0.11 deleterious(0) possibly_damaging(0.879) TCGA-86-8056-01 2 220098866 220098866 C T ANKZF1 Missense_Mutation p.R354W 0.08 deleterious(0.04) benign(0.004) TCGA-86-8056-01 2 238285951 238285951 G A COL6A3 Missense_Mutation p.S845L 0.25 probably_damaging(0.992) TCGA-86-8056-01 2 238434334 238434335 - C MLPH Frame_Shift_Ins p.H257Pfs*19 0.19 TCGA-86-8056-01 2 241700234 241700234 C G KIF1A Silent p.T764T 0.26 TCGA-86-8056-01 2 50463947 50463947 C - NRXN1 Frame_Shift_Del p.D1216Tfs*3 0.27 TCGA-86-8056-01 2 61508294 61508294 A C USP34 Silent p.S1694S 0.17 TCGA-86-8056-01 2 71709041 71709041 G C DYSF Silent p.L60L 0.24 TCGA-86-8056-01 2 71709042 71709042 G T DYSF Missense_Mutation p.D61Y 0.25 deleterious(0) probably_damaging(1) TCGA-86-8056-01 2 77745749 77745749 C A LRRTM4 Nonsense_Mutation p.E416* 0.29 TCGA-86-8056-01 3 126114889 126114889 G A CCDC37 Missense_Mutation p.D16N 0.20 tolerated_low_confidence(1) benign(0) TCGA-86-8056-01 3 129034285 129034285 G C H1FX Missense_Mutation p.S154C 0.17 deleterious(0.03) benign(0.011) TCGA-86-8056-01 3 137483864 137483864 C T SOX14 Missense_Mutation p.R80W 0.31 deleterious(0) probably_damaging(1) TCGA-86-8056-01 3 151127038 151127038 C T MED12L Missense_Mutation p.P1908L 0.18 tolerated_low_confidence(0.45) benign(0.207) TCGA-86-8056-01 3 15520852 15520852 C T COLQ Missense_Mutation p.G120E 0.08 deleterious(0) unknown(0) TCGA-86-8056-01 3 156746189 156746189 G A LEKR1 Missense_Mutation p.E556K 0.07 deleterious(0) possibly_damaging(0.486) TCGA-86-8056-01 3 169496852 169496852 C T MYNN Missense_Mutation p.S188F 0.26 deleterious(0.01) benign(0.406) TCGA-86-8056-01 3 184936024 184936024 T G EHHADH Missense_Mutation p.R156S 0.26 deleterious(0.01) possibly_damaging(0.728) TCGA-86-8056-01 3 19190270 19190270 C T KCNH8 Missense_Mutation p.T20I 0.15 deleterious(0.01) possibly_damaging(0.617) TCGA-86-8056-01 3 194081334 194081334 G T LRRC15 Missense_Mutation p.Q153K 0.19 tolerated(0.35) benign(0.197) TCGA-86-8056-01 3 27439707 27439707 C G SLC4A7 Missense_Mutation p.K846N 0.20 deleterious(0) probably_damaging(0.999) TCGA-86-8056-01 3 396417 396417 C T CHL1 Silent p.P376P 0.15 TCGA-86-8056-01 3 40211489 40211489 C T MYRIP Missense_Mutation p.P260S 0.18 tolerated(0.44) benign(0.152) TCGA-86-8056-01 3 46009678 46009678 G A FYCO1 Missense_Mutation p.S383L 0.08 tolerated(1) benign(0) TCGA-86-8056-01 3 48488255 48488255 G A ATRIP Silent p.A2A 0.27 TCGA-86-8056-01 3 49338025 49338025 C A USP4 Nonsense_Mutation p.E463* 0.24 TCGA-86-8056-01 3 59908077 59908077 C T FHIT Missense_Mutation p.E115K 0.10 tolerated(0.09) benign(0.001) TCGA-86-8056-01 3 98510751 98510751 C T ST3GAL6 Missense_Mutation p.H275Y 0.08 deleterious(0) probably_damaging(0.998) TCGA-86-8056-01 4 10084702 10084702 G C WDR1 Missense_Mutation p.I380M 0.15 deleterious(0.04) possibly_damaging(0.581) TCGA-86-8056-01 4 103571816 103571816 G A MANBA Missense_Mutation p.L583F 0.25 tolerated(0.48) benign(0.004) TCGA-86-8056-01 4 109000667 109000667 C T LEF1 Missense_Mutation p.D276N 0.25 tolerated(0.19) benign(0.275) TCGA-86-8056-01 4 126372244 126372244 C A FAT4 Missense_Mutation p.S3358Y 0.07 probably_damaging(0.956) TCGA-86-8056-01 4 183713853 183713853 G A TENM3 Missense_Mutation p.D2010N 0.08 tolerated(0.12) possibly_damaging(0.811) TCGA-86-8056-01 4 46967043 46967043 G C GABRA4 Missense_Mutation p.Q360E 0.20 tolerated(1) benign(0.134) TCGA-86-8056-01 4 5798755 5798755 G T EVC Silent p.T631T 0.22 TCGA-86-8056-01 4 69811083 69811083 G T UGT2A3 Missense_Mutation p.Q269K 0.25 deleterious(0) benign(0.312) TCGA-86-8056-01 4 81123163 81123163 C T PRDM8 Missense_Mutation p.H183Y 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.775) TCGA-86-8056-01 4 81284004 81284004 G C C4orf22 Missense_Mutation p.E70Q 0.15 tolerated(0.17) benign(0.127) TCGA-86-8056-01 5 101631703 101631703 G A SLCO4C1 Silent p.Y88Y 0.05 TCGA-86-8056-01 5 140203027 140203027 A G PCDHA5 Missense_Mutation p.D556G 0.33 deleterious_low_confidence(0.01) probably_damaging(0.951) TCGA-86-8056-01 5 140581230 140581230 G T PCDHB11 Missense_Mutation p.R628M 0.45 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-86-8056-01 5 140698670 140698670 G C TAF7 Silent p.L314L 0.32 TCGA-86-8056-01 5 149456977 149456977 C G CSF1R Missense_Mutation p.D251H 0.10 deleterious(0.05) probably_damaging(0.959) TCGA-86-8056-01 5 167850872 167850872 C T WWC1 Missense_Mutation p.R537C 0.10 deleterious(0.05) probably_damaging(0.981) TCGA-86-8056-01 5 178419046 178419046 G A GRM6 Silent p.L181L 0.13 TCGA-86-8056-01 5 178548720 178548720 G T ADAMTS2 Nonsense_Mutation p.Y1040* 0.51 TCGA-86-8056-01 5 35875641 35875641 C - IL7R Frame_Shift_Del p.D278Ifs*17 0.15 TCGA-86-8056-01 5 54763765 54763765 G T PPAP2A Silent p.I142I 0.16 TCGA-86-8056-01 5 6607417 6607417 G A NSUN2 Silent p.P468P 0.22 TCGA-86-8056-01 5 6607434 6607434 C T NSUN2 Missense_Mutation p.G463R 0.24 tolerated(0.18) benign(0.014) TCGA-86-8056-01 5 71492241 71492241 C A MAP1B Missense_Mutation p.A1020D 0.31 benign(0.095) TCGA-86-8056-01 5 73931637 73931637 C T ENC1 Missense_Mutation p.R225H 0.13 deleterious(0) possibly_damaging(0.905) TCGA-86-8056-01 5 74011444 74011444 C T HEXB Silent p.F337F 0.10 TCGA-86-8056-01 5 78384334 78384334 G T BHMT2 Missense_Mutation p.W343C 0.23 deleterious(0) probably_damaging(1) TCGA-86-8056-01 5 80338785 80338785 G A RASGRF2 Silent p.E126E 0.17 TCGA-86-8056-01 6 12163815 12163815 C T HIVEP1 Silent p.L2426L 0.13 TCGA-86-8056-01 6 142519584 142519584 G A VTA1 Missense_Mutation p.E177K 0.16 tolerated(0.66) benign(0.068) TCGA-86-8056-01 6 160211528 160211528 G T MRPL18 5'UTR 0.30 TCGA-86-8056-01 6 169639701 169639701 G T THBS2 Nonsense_Mutation p.C374* 0.24 TCGA-86-8056-01 6 27860932 27860932 A G HIST1H2AM 5'UTR 0.14 TCGA-86-8056-01 6 2896288 2896288 G A SERPINB9 Missense_Mutation p.S102L 0.29 tolerated(0.1) benign(0.12) TCGA-86-8056-01 6 42985036 42985036 G A KLHDC3 Missense_Mutation p.E36K 0.13 deleterious(0.02) probably_damaging(0.938) TCGA-86-8056-01 6 70034846 70034846 C T BAI3 Missense_Mutation p.S966L 0.29 deleterious(0.01) probably_damaging(0.994) TCGA-86-8056-01 6 93956581 93956581 C G EPHA7 Missense_Mutation p.Q885H 0.26 tolerated(0.11) benign(0.015) TCGA-86-8056-01 7 100609736 100609736 G A MUC3A Intron 0.17 TCGA-86-8056-01 7 100856412 100856412 C A PLOD3 Silent p.V251V 0.18 TCGA-86-8056-01 7 107823197 107823197 C A NRCAM Silent p.L824L 0.12 TCGA-86-8056-01 7 123302743 123302743 G A LMOD2 Missense_Mutation p.G368E 0.14 tolerated(0.4) possibly_damaging(0.807) TCGA-86-8056-01 7 141758101 141758101 T C MGAM Silent p.D1264D 0.28 TCGA-86-8056-01 7 149430403 149430403 C T KRBA1 Missense_Mutation p.S786F 0.14 deleterious(0.01) benign(0.021) TCGA-86-8056-01 7 151879337 151879337 G A KMT2C Nonsense_Mutation p.Q1870* 0.13 TCGA-86-8056-01 7 2284283 2284283 G A NUDT1 Missense_Mutation p.R48Q 0.10 deleterious(0.04) possibly_damaging(0.801) TCGA-86-8056-01 7 24892237 24892237 C A OSBPL3 Missense_Mutation p.R348S 0.31 tolerated(0.28) benign(0.009) TCGA-86-8056-01 7 42949857 42949857 C T C7orf25 Missense_Mutation p.E273K 0.06 tolerated(0.22) benign(0.417) TCGA-86-8056-01 7 76112263 76112263 C T DTX2 Missense_Mutation p.S236F 0.09 tolerated(0.51) benign(0) TCGA-86-8056-01 7 91645567 91645567 G A AKAP9 Missense_Mutation p.R1246K 0.12 benign(0.005) TCGA-86-8056-01 8 105001615 105001615 G T RIMS2 Missense_Mutation p.V1004F 0.22 tolerated_low_confidence(0.7) benign(0.123) TCGA-86-8056-01 8 143784772 143784772 G A LY6K Missense_Mutation p.G161S 0.24 tolerated(0.13) unknown(0) TCGA-86-8056-01 8 27098601 27098601 C T STMN4 Silent p.K123K 0.25 TCGA-86-8056-01 8 30938414 30938414 A T WRN Missense_Mutation p.N291Y 0.25 deleterious(0) probably_damaging(0.927) TCGA-86-8056-01 8 41791195 41791195 C T KAT6A Missense_Mutation p.E1515K 0.10 unknown(0) TCGA-86-8056-01 8 42587480 42587480 C - CHRNB3 Frame_Shift_Del p.P344Qfs*6 0.18 TCGA-86-8056-01 8 43152582 43152582 G A POTEA RNA 0.35 TCGA-86-8056-01 8 48743289 48743289 C G PRKDC Missense_Mutation p.K2757N 0.12 benign(0.014) TCGA-86-8056-01 8 65509338 65509338 T A CYP7B1 Missense_Mutation p.Q461L 0.37 tolerated(1) benign(0.01) TCGA-86-8056-01 8 73849410 73849410 C A KCNB2 Missense_Mutation p.T607N 0.19 tolerated_low_confidence(0.43) possibly_damaging(0.555) TCGA-86-8056-01 8 73849414 73849414 C G KCNB2 Missense_Mutation p.S608R 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-86-8056-01 8 77616308 77616308 C T ZFHX4 5'UTR 0.40 TCGA-86-8056-01 8 87656012 87656012 G T CNGB3 Missense_Mutation p.T382N 0.26 deleterious(0) benign(0.027) TCGA-86-8056-01 8 88249287 88249287 G C CNBD1 Missense_Mutation p.E240Q 0.06 tolerated(0.1) benign(0.003) TCGA-86-8056-01 8 95952299 95952299 C G TP53INP1 Missense_Mutation p.E88Q 0.11 tolerated(0.12) benign(0.387) TCGA-86-8056-01 9 101530409 101530409 G C ANKS6 Missense_Mutation p.S699C 0.16 tolerated(0.07) possibly_damaging(0.711) TCGA-86-8056-01 9 111819471 111819471 C A TMEM245 Silent p.S618S 0.21 TCGA-86-8056-01 9 117853182 117853182 G A TNC Missense_Mutation p.A39V 0.34 tolerated(1) benign(0.001) TCGA-86-8056-01 9 123935779 123935779 C G CNTRL Missense_Mutation p.H2226D 0.04 benign(0.197) TCGA-86-8056-01 9 131285898 131285898 G A GLE1 Missense_Mutation p.E224K 0.07 deleterious(0.02) probably_damaging(0.987) TCGA-86-8056-01 9 131830610 131830610 C A FAM73B Missense_Mutation p.T468K 0.26 deleterious(0) probably_damaging(1) TCGA-86-8056-01 9 135447916 135447916 C T C9orf171 3'UTR 0.28 TCGA-86-8056-01 9 19049667 19049667 A G RRAGA Missense_Mutation p.T4A 0.30 tolerated(0.13) benign(0.006) TCGA-86-8056-01 9 19126171 19126171 G C PLIN2 Missense_Mutation p.T56S 0.40 tolerated(0.06) benign(0.145) TCGA-86-8056-01 9 27220139 27220139 G A TEK Missense_Mutation p.E1066K 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-86-8056-01 9 37537899 37537899 C G FBXO10 Missense_Mutation p.E209D 0.19 deleterious(0.01) probably_damaging(0.991) TCGA-86-8056-01 9 94487335 94487335 C G ROR2 Missense_Mutation p.E481Q 0.13 deleterious(0) probably_damaging(0.99) TCGA-86-8056-01 X 105193617 105193617 G A NRK Silent p.L1469L 0.19 TCGA-86-8056-01 X 12708425 12708425 G A FRMPD4 Missense_Mutation p.E265K 0.20 deleterious(0.01) probably_damaging(0.91) TCGA-86-8056-01 X 129185863 129185863 C A BCORL1 Silent p.L1575L 0.19 TCGA-86-8056-01 X 129364679 129364679 G T ZNF280C Missense_Mutation p.T265N 0.15 tolerated(1) benign(0.001) TCGA-86-8056-01 X 134990364 134990364 C A SAGE1 Missense_Mutation p.P426T 0.32 tolerated(0.06) benign(0.031) TCGA-86-8056-01 X 135303037 135303037 T C MAP7D3 Silent p.L791L 0.32 TCGA-86-8056-01 X 135581842 135581842 A T HTATSF1 Missense_Mutation p.D91V 0.31 deleterious(0.01) benign(0.119) TCGA-86-8056-01 X 140983304 140983304 G A MAGEC3 Missense_Mutation p.R361Q 0.17 tolerated(0.22) benign(0.029) TCGA-86-8056-01 X 153043455 153043455 G A PLXNB3 Missense_Mutation p.D1795N 0.24 deleterious(0) probably_damaging(1) TCGA-86-8056-01 X 153416310 153416310 G A OPN1LW Missense_Mutation p.D99N 0.18 tolerated(0.68) probably_damaging(0.967) TCGA-86-8056-01 X 15349800 15349800 T C PIGA Missense_Mutation p.S85G 0.03 tolerated(0.13) benign(0.001) TCGA-86-8056-01 X 21450849 21450849 C G CNKSR2 Silent p.T116T 0.15 TCGA-86-8056-01 X 23412249 23412249 G C PTCHD1 Missense_Mutation p.E872Q 0.28 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-86-8056-01 X 34961582 34961582 C A FAM47B Missense_Mutation p.R212S 0.35 tolerated(0.51) benign(0.028) TCGA-86-8056-01 X 48318158 48318158 G T SLC38A5 Silent p.V391V 0.21 TCGA-86-8056-01 X 50052227 50052227 A G CCNB3 Missense_Mutation p.Q353R 0.30 deleterious(0.01) possibly_damaging(0.782) TCGA-86-8056-01 X 51079165 51079165 G C NUDT10 3'UTR 0.35 TCGA-86-8056-01 X 51639633 51639633 G A MAGED1 Silent p.V350V 0.13 TCGA-86-8056-01 X 53117090 53117090 C A TSPYL2 Missense_Mutation p.A684D 0.09 deleterious_low_confidence(0) unknown(0) TCGA-86-8056-01 X 55041408 55041408 G T ALAS2 Silent p.T403T 0.14 TCGA-86-8056-01 X 55117842 55117842 A C PAGE2 Silent p.R91R 0.14 TCGA-86-8056-01 X 65393570 65393570 C G HEPH Missense_Mutation p.I238M 0.12 tolerated(0.13) possibly_damaging(0.857) TCGA-86-8056-01 X 65423252 65423252 G T HEPH Silent p.G762G 0.23 TCGA-86-8056-01 X 69459750 69459750 G T AWAT1 Silent p.G266G 0.30 TCGA-86-8056-01 X 71424865 71424865 C T ERCC6L Silent p.%3D 0.11 TCGA-86-8056-01 X 78010445 78010445 G T LPAR4 Missense_Mutation p.A27S 0.04 tolerated(0.89) benign(0) TCGA-86-8056-01 X 91133910 91133910 A T PCDH11X Missense_Mutation p.T891S 0.11 tolerated(1) benign(0.012) TCGA-86-8056-01 X 91873330 91873330 C T PCDH11X Silent p.I1145I 0.15 TCGA-86-8073-01 10 102684395 102684395 G T FAM178A Missense_Mutation p.R546L 0.12 tolerated(0.68) benign(0.13) TCGA-86-8073-01 10 103343344 103343344 C A POLL Missense_Mutation p.S329I 0.22 deleterious(0) possibly_damaging(0.603) TCGA-86-8073-01 10 104174740 104174740 G T PSD Missense_Mutation p.P335H 0.14 deleterious(0.01) benign(0.319) TCGA-86-8073-01 10 105362386 105362386 C A SH3PXD2A Silent p.A835A 0.13 TCGA-86-8073-01 10 105363419 105363419 C A SH3PXD2A Missense_Mutation p.R491L 0.22 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 10 106959842 106959842 G T SORCS3 Nonsense_Mutation p.E699* 0.10 TCGA-86-8073-01 10 106970909 106970909 A C SORCS3 Missense_Mutation p.E759A 0.11 deleterious(0) benign(0.434) TCGA-86-8073-01 10 106976796 106976796 A T SORCS3 Nonsense_Mutation p.K884* 0.04 TCGA-86-8073-01 10 113928217 113928217 C A GPAM Missense_Mutation p.R320S 0.12 deleterious(0) probably_damaging(1) TCGA-86-8073-01 10 114059274 114059274 C T TECTB Silent p.L287L 0.13 TCGA-86-8073-01 10 114575084 114575084 G T VTI1A Missense_Mutation p.G199V 0.18 tolerated(0.17) benign(0.084) TCGA-86-8073-01 10 115963868 115963868 C T TDRD1 Nonsense_Mutation p.Q340* 0.15 TCGA-86-8073-01 10 1170964 1170964 G T WDR37 Missense_Mutation p.Q451H 0.18 deleterious(0) probably_damaging(0.948) TCGA-86-8073-01 10 117856249 117856249 T A GFRA1 Missense_Mutation p.N266I 0.23 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 10 119805663 119805663 G T RAB11FIP2 Silent p.S4S 0.14 TCGA-86-8073-01 10 122280506 122280506 G C PPAPDC1A Missense_Mutation p.R115P 0.13 deleterious(0) probably_damaging(1) TCGA-86-8073-01 10 122348909 122348909 C A PPAPDC1A Silent p.P237P 0.20 TCGA-86-8073-01 10 123969912 123969912 G T TACC2 Missense_Mutation p.G1991V 0.13 probably_damaging(0.997) TCGA-86-8073-01 10 123970502 123970502 T A TACC2 Missense_Mutation p.L2188M 0.12 possibly_damaging(0.492) TCGA-86-8073-01 10 124742388 124742388 A T PSTK Missense_Mutation p.K119M 0.14 deleterious(0.05) possibly_damaging(0.907) TCGA-86-8073-01 10 131639172 131639172 G T EBF3 Silent p.A490A 0.19 TCGA-86-8073-01 10 133769306 133769306 C T PPP2R2D Missense_Mutation p.R370W 0.15 deleterious(0.02) benign(0.254) TCGA-86-8073-01 10 134016261 134016261 G A DPYSL4 Missense_Mutation p.A465T 0.06 tolerated(0.52) benign(0.001) TCGA-86-8073-01 10 135020770 135020770 G A KNDC1 Missense_Mutation p.V1237I 0.10 deleterious(0.01) benign(0.047) TCGA-86-8073-01 10 135038437 135038437 T C KNDC1 3'UTR 0.20 TCGA-86-8073-01 10 135038438 135038438 G T KNDC1 3'UTR 0.20 TCGA-86-8073-01 10 135083894 135083894 C A ADAM8 Silent p.V585V 0.10 TCGA-86-8073-01 10 135083990 135083990 C A ADAM8 Missense_Mutation p.Q553H 0.15 tolerated(0.41) benign(0.325) TCGA-86-8073-01 10 13708177 13708177 T A FRMD4A Missense_Mutation p.Q508L 0.20 deleterious(0) benign(0.116) TCGA-86-8073-01 10 1405928 1405928 C A ADARB2 Silent p.V124V 0.18 TCGA-86-8073-01 10 14941587 14941587 A T SUV39H2 Missense_Mutation p.K300M 0.09 deleterious(0.03) possibly_damaging(0.583) TCGA-86-8073-01 10 15713606 15713606 C A ITGA8 Missense_Mutation p.Q281H 0.11 tolerated(0.1) benign(0.281) TCGA-86-8073-01 10 15713619 15713619 G A ITGA8 Missense_Mutation p.T277I 0.20 deleterious(0) probably_damaging(0.934) TCGA-86-8073-01 10 16562527 16562527 G T C1QL3 Missense_Mutation p.R180S 0.13 deleterious(0.03) possibly_damaging(0.793) TCGA-86-8073-01 10 16893278 16893278 C A CUBN Nonsense_Mutation p.E3207* 0.12 TCGA-86-8073-01 10 16918967 16918967 G T CUBN Missense_Mutation p.P3012Q 0.07 deleterious(0.05) benign(0.387) TCGA-86-8073-01 10 17365095 17365096 - A ST8SIA6 Frame_Shift_Ins p.V233Cfs*59 0.16 TCGA-86-8073-01 10 18292119 18292119 A T SLC39A12 Missense_Mutation p.L593F 0.16 deleterious(0) probably_damaging(1) TCGA-86-8073-01 10 21250675 21250675 C A NEBL Missense_Mutation p.G61W 0.10 deleterious(0) probably_damaging(1) TCGA-86-8073-01 10 27389205 27389205 C A ANKRD26 Silent p.A17A 0.07 TCGA-86-8073-01 10 28899726 28899726 C G WAC Missense_Mutation p.Q422E 0.12 deleterious(0) probably_damaging(0.966) TCGA-86-8073-01 10 32197422 32197422 G A ARHGAP12 Missense_Mutation p.S121L 0.11 tolerated(0.18) benign(0.002) TCGA-86-8073-01 10 37508451 37508451 G T ANKRD30A Nonsense_Mutation p.G1215* 0.19 TCGA-86-8073-01 10 44112065 44112065 G A ZNF485 Missense_Mutation p.G192R 0.16 tolerated(0.06) probably_damaging(1) TCGA-86-8073-01 10 48438717 48438717 G A GDF10 5'UTR 0.14 TCGA-86-8073-01 10 49420093 49420093 C T FRMPD2 Silent p.E505E 0.07 TCGA-86-8073-01 10 49457176 49457176 G T FRMPD2 Missense_Mutation p.A66E 0.09 deleterious(0.02) benign(0.055) TCGA-86-8073-01 10 50678798 50678798 C T ERCC6 Missense_Mutation p.E1070K 0.12 tolerated(0.46) benign(0.001) TCGA-86-8073-01 10 50819977 50819977 C A SLC18A3 Silent p.V397V 0.16 TCGA-86-8073-01 10 50872881 50872881 G T CHAT Missense_Mutation p.G679V 0.15 deleterious(0) probably_damaging(1) TCGA-86-8073-01 10 51465353 51465353 G T AGAP7 Missense_Mutation p.P368Q 0.17 tolerated(0.05) possibly_damaging(0.763) TCGA-86-8073-01 10 55582241 55582241 G A PCDH15 Missense_Mutation p.P1751S 0.17 tolerated_low_confidence(0.25) unknown(0) TCGA-86-8073-01 10 55826619 55826619 C T PCDH15 Silent p.V706V 0.18 TCGA-86-8073-01 10 56077081 56077081 C A PCDH15 Missense_Mutation p.D276Y 0.19 deleterious(0) probably_damaging(1) TCGA-86-8073-01 10 61413644 61413644 G A SLC16A9 Silent p.I380I 0.15 TCGA-86-8073-01 10 67680267 67680267 T A CTNNA3 Missense_Mutation p.S837C 0.16 deleterious(0.02) unknown(0) TCGA-86-8073-01 10 71154764 71154764 G T HK1 Missense_Mutation p.D764Y 0.09 deleterious(0.02) probably_damaging(0.959) TCGA-86-8073-01 10 72294242 72294242 C A PALD1 Missense_Mutation p.L362I 0.19 tolerated(1) benign(0.012) TCGA-86-8073-01 10 73039597 73039597 G T UNC5B Missense_Mutation p.E33D 0.19 tolerated(0.62) benign(0.001) TCGA-86-8073-01 10 73565993 73565993 C A CDH23 Silent p.A471A 0.17 TCGA-86-8073-01 10 75231359 75231359 T C PPP3CB Missense_Mutation p.Y179C 0.14 deleterious(0.01) probably_damaging(0.967) TCGA-86-8073-01 10 75506736 75506736 C T SEC24C Missense_Mutation p.P49L 0.14 tolerated_low_confidence(0.06) benign(0.002) TCGA-86-8073-01 10 7749193 7749193 G A ITIH2 Missense_Mutation p.M63I 0.14 tolerated(0.21) benign(0) TCGA-86-8073-01 10 7825115 7825115 C G KIN Missense_Mutation p.M46I 0.08 deleterious(0.02) benign(0.08) TCGA-86-8073-01 10 78669794 78669794 A T KCNMA1 Missense_Mutation p.L1009Q 0.14 tolerated(0.06) probably_damaging(1) TCGA-86-8073-01 10 79581162 79581162 C A DLG5 Missense_Mutation p.R1027M 0.12 deleterious(0) benign(0.398) TCGA-86-8073-01 10 8092786 8092786 G T GATA3 5'Flank 0.25 TCGA-86-8073-01 10 8111478 8111478 A T GATA3 Missense_Mutation p.T323S 0.13 deleterious(0.01) possibly_damaging(0.907) TCGA-86-8073-01 10 81146192 81146192 C A ZCCHC24 Missense_Mutation p.G212V 0.16 deleterious(0) probably_damaging(0.992) TCGA-86-8073-01 10 82403798 82403798 G T SH2D4B Silent p.R345R 0.11 TCGA-86-8073-01 10 88259902 88259902 C A WAPAL Missense_Mutation p.L366F 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.771) TCGA-86-8073-01 10 88459155 88459155 C A LDB3 Intron 0.14 TCGA-86-8073-01 10 88912501 88912501 A T FAM35A Missense_Mutation p.N464Y 0.09 deleterious(0.01) probably_damaging(0.942) TCGA-86-8073-01 10 89469050 89469050 G T PAPSS2 Missense_Mutation p.G42V 0.06 deleterious(0) probably_damaging(1) TCGA-86-8073-01 10 89474571 89474571 C T PAPSS2 Missense_Mutation p.S197F 0.20 tolerated(0.7) benign(0.002) TCGA-86-8073-01 10 90497450 90497450 C T LIPK Missense_Mutation p.T243I 0.17 tolerated(0.23) possibly_damaging(0.79) TCGA-86-8073-01 10 91533843 91533843 A G KIF20B 3'UTR 0.21 TCGA-86-8073-01 10 94605 94605 A G TUBB8 Missense_Mutation p.V76A 0.11 deleterious_low_confidence(0.03) probably_damaging(0.924) TCGA-86-8073-01 10 94835010 94835010 G T CYP26A1 Silent p.A270A 0.08 TCGA-86-8073-01 10 95275299 95275299 G T CEP55 Missense_Mutation p.K222N 0.09 deleterious(0.04) benign(0.003) TCGA-86-8073-01 10 96028741 96028741 G A PLCE1 Missense_Mutation p.G1446E 0.09 deleterious(0) probably_damaging(1) TCGA-86-8073-01 10 96028742 96028742 G T PLCE1 Silent p.G1446G 0.09 TCGA-86-8073-01 10 96495115 96495115 G A CYP2C18 Missense_Mutation p.D463N 0.08 tolerated(0.08) benign(0.011) TCGA-86-8073-01 10 97141441 97141441 C T SORBS1 Splice_Site p.X551_splice 0.11 TCGA-86-8073-01 10 99023382 99023382 C A ARHGAP19 Missense_Mutation p.L136F 0.19 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 11 101773353 101773353 T A ANGPTL5 Missense_Mutation p.E180V 0.24 deleterious(0) probably_damaging(0.986) TCGA-86-8073-01 11 101833043 101833043 C T KIAA1377 Missense_Mutation p.S426F 0.20 tolerated(0.19) benign(0.077) TCGA-86-8073-01 11 1019304 1019304 G T MUC6 Missense_Mutation p.P1334Q 0.12 unknown(0) TCGA-86-8073-01 11 102595629 102595629 C T MMP8 5'UTR 0.16 TCGA-86-8073-01 11 102668046 102668046 C G MMP1 Silent p.V97V 0.20 TCGA-86-8073-01 11 102711239 102711239 G A MMP3 Silent p.Y237Y 0.20 TCGA-86-8073-01 11 103907912 103907912 C T DDI1 Missense_Mutation p.A121V 0.07 tolerated(0.34) benign(0.001) TCGA-86-8073-01 11 105623852 105623852 G T GRIA4 Silent p.V131V 0.12 TCGA-86-8073-01 11 10580675 10580675 G T LYVE1 Missense_Mutation p.L318M 0.14 tolerated(0.19) benign(0.106) TCGA-86-8073-01 11 1083757 1083757 G T MUC2 Missense_Mutation p.K763N 0.17 probably_damaging(0.94) TCGA-86-8073-01 11 1083842 1083842 G T MUC2 Splice_Site p.X791_splice 0.15 TCGA-86-8073-01 11 108594025 108594025 G T DDX10 Nonsense_Mutation p.G601* 0.13 TCGA-86-8073-01 11 111625273 111625273 T A PPP2R1B Missense_Mutation p.I327F 0.24 tolerated(0.33) benign(0.003) TCGA-86-8073-01 11 113212616 113212616 C A TTC12 Silent p.L318L 0.11 TCGA-86-8073-01 11 113281624 113281624 C A DRD2 Missense_Mutation p.W386L 0.15 deleterious(0.02) probably_damaging(1) TCGA-86-8073-01 11 113569708 113569708 T C TMPRSS5 Missense_Mutation p.T83A 0.23 tolerated(0.53) benign(0.004) TCGA-86-8073-01 11 113775669 113775669 T C HTR3B Missense_Mutation p.V5A 0.08 tolerated(1) benign(0) TCGA-86-8073-01 11 117302320 117302320 G T DSCAML1 Silent p.T1828T 0.12 TCGA-86-8073-01 11 118272356 118272356 G T RP11-770J1.5 Silent p.R9R 0.10 TCGA-86-8073-01 11 119077180 119077180 G T CBL Missense_Mutation p.G18V 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.694) TCGA-86-8073-01 11 119212433 119212433 C A MFRP Missense_Mutation p.G522V 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-86-8073-01 11 119510596 119510596 G T RP11-196E1.3 RNA 0.10 TCGA-86-8073-01 11 1217665 1217665 C A MUC5AC RNA 0.08 TCGA-86-8073-01 11 124440747 124440747 T A OR8A1 Silent p.L261L 0.14 TCGA-86-8073-01 11 124792348 124792348 G C HEPACAM Missense_Mutation p.T295S 0.11 tolerated(0.08) benign(0.007) TCGA-86-8073-01 11 126333118 126333118 C G KIRREL3 Missense_Mutation p.V226L 0.10 deleterious(0.03) benign(0.26) TCGA-86-8073-01 11 126333119 126333119 G A KIRREL3 Silent p.I225I 0.10 TCGA-86-8073-01 11 1268644 1268644 C A MUC5B Missense_Mutation p.P3512T 0.27 unknown(0) TCGA-86-8073-01 11 128839824 128839824 C A ARHGAP32 Nonsense_Mutation p.E1748* 0.06 TCGA-86-8073-01 11 128839825 128839825 C A ARHGAP32 Missense_Mutation p.M1747I 0.06 tolerated(0.06) benign(0.031) TCGA-86-8073-01 11 128856502 128856502 G A ARHGAP32 Missense_Mutation p.H440Y 0.13 deleterious(0) probably_damaging(0.998) TCGA-86-8073-01 11 130319275 130319275 T G ADAMTS15 Missense_Mutation p.I136S 0.13 deleterious(0) probably_damaging(0.976) TCGA-86-8073-01 11 133714517 133714517 G T SPATA19 Silent p.R52R 0.19 TCGA-86-8073-01 11 133801381 133801381 T A IGSF9B Silent p.A445A 0.31 TCGA-86-8073-01 11 14157006 14157006 C T RNA5SP332 3'Flank 0.13 TCGA-86-8073-01 11 14889144 14889144 C A PDE3B Silent p.T993T 0.25 TCGA-86-8073-01 11 15994655 15994655 T A SOX6 Missense_Mutation p.Q709H 0.12 tolerated(0.08) probably_damaging(0.989) TCGA-86-8073-01 11 17452355 17452355 C A ABCC8 Intron 0.15 TCGA-86-8073-01 11 17470172 17470172 G A ABCC8 Missense_Mutation p.S408F 0.16 deleterious(0) possibly_damaging(0.866) TCGA-86-8073-01 11 17544442 17544442 C A USH1C Missense_Mutation p.R303L 0.18 deleterious(0) possibly_damaging(0.758) TCGA-86-8073-01 11 18739528 18739528 T C IGSF22 Missense_Mutation p.Y308C 0.23 deleterious(0) probably_damaging(0.997) TCGA-86-8073-01 11 18955516 18955516 G A MRGPRX1 Silent p.Y272Y 0.26 TCGA-86-8073-01 11 19954916 19954916 G T NAV2 Missense_Mutation p.V399F 0.14 deleterious(0) benign(0.128) TCGA-86-8073-01 11 22283832 22283832 G T ANO5 Missense_Mutation p.W596C 0.10 deleterious(0) probably_damaging(1) TCGA-86-8073-01 11 22380974 22380974 C A SLC17A6 Silent p.A158A 0.15 TCGA-86-8073-01 11 22399132 22399132 C A SLC17A6 Missense_Mutation p.T532N 0.09 tolerated(0.54) benign(0.001) TCGA-86-8073-01 11 2437190 2437190 C T TRPM5 Nonsense_Mutation p.W358* 0.33 TCGA-86-8073-01 11 26743036 26743036 G C SLC5A12 Missense_Mutation p.R76G 0.23 deleterious(0) probably_damaging(0.913) TCGA-86-8073-01 11 27679836 27679836 G T BDNF Silent p.S174S 0.15 TCGA-86-8073-01 11 2993337 2993337 C A NAP1L4 Missense_Mutation p.D104Y 0.14 deleterious(0) probably_damaging(0.99) TCGA-86-8073-01 11 30900145 30900145 G C DCDC1 Missense_Mutation p.H1780D 0.11 tolerated_low_confidence(0.32) unknown(0) TCGA-86-8073-01 11 32124954 32124954 G T RCN1 Missense_Mutation p.W272C 0.12 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 11 32697559 32697559 C A CCDC73 Missense_Mutation p.K146N 0.10 deleterious(0.01) possibly_damaging(0.449) TCGA-86-8073-01 11 36422705 36422705 G T PRR5L Nonsense_Mutation p.E12* 0.34 TCGA-86-8073-01 11 40136954 40136954 G T LRRC4C Missense_Mutation p.H297N 0.18 tolerated(0.15) benign(0.072) TCGA-86-8073-01 11 43775613 43775613 G A HSD17B12 Missense_Mutation p.M75I 0.16 tolerated(0.22) benign(0.06) TCGA-86-8073-01 11 4406615 4406615 C T TRIM21 Missense_Mutation p.R443Q 0.17 tolerated(0.4) probably_damaging(1) TCGA-86-8073-01 11 45892021 45892021 G T CRY2 Missense_Mutation p.S517I 0.30 deleterious(0.05) benign(0.111) TCGA-86-8073-01 11 4703958 4703958 G C OR51E2 5'UTR 0.12 TCGA-86-8073-01 11 47374230 47374230 G T MYBPC3 5'UTR 0.14 TCGA-86-8073-01 11 4825814 4825814 T A OR52R1 5'Flank 0.09 TCGA-86-8073-01 11 4825815 4825815 C A OR52R1 5'Flank 0.09 TCGA-86-8073-01 11 48510940 48510940 C A OR4A47 Missense_Mutation p.A199D 0.24 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-86-8073-01 11 4967752 4967752 G A OR51A4 Silent p.D193D 0.14 TCGA-86-8073-01 11 5080739 5080739 G T OR52E2 Missense_Mutation p.A40E 0.23 deleterious(0) probably_damaging(0.977) TCGA-86-8073-01 11 5221535 5221535 G A OR51V1 Silent p.Y132Y 0.17 TCGA-86-8073-01 11 5323126 5323126 G T OR51B4 Silent p.G17G 0.13 TCGA-86-8073-01 11 55371073 55371073 G T OR4C11 Silent p.P259P 0.18 TCGA-86-8073-01 11 55371287 55371287 A T OR4C11 Missense_Mutation p.M188K 0.15 deleterious(0.05) possibly_damaging(0.598) TCGA-86-8073-01 11 55658649 55658649 C A TRIM51 Silent p.I300I 0.14 TCGA-86-8073-01 11 55703416 55703416 C T OR5I1 Missense_Mutation p.G154D 0.14 deleterious(0) benign(0.017) TCGA-86-8073-01 11 55703700 55703700 G A OR5I1 Silent p.T59T 0.12 TCGA-86-8073-01 11 55927548 55927548 C T OR8K5 Silent p.L82L 0.09 TCGA-86-8073-01 11 56113928 56113928 C T OR8K1 Silent p.Y138Y 0.11 TCGA-86-8073-01 11 56380332 56380332 A T OR5M1 Missense_Mutation p.L216Q 0.19 deleterious(0) possibly_damaging(0.882) TCGA-86-8073-01 11 57373651 57373651 C G SERPING1 Missense_Mutation p.T285S 0.07 tolerated(0.1) benign(0.036) TCGA-86-8073-01 11 5776765 5776765 C T OR52N4 Silent p.R265R 0.22 TCGA-86-8073-01 11 58170427 58170427 C A OR5B3 Silent p.L152L 0.14 TCGA-86-8073-01 11 59828704 59828705 CG T MS4A3 Frame_Shift_Del p.A24Vfs*6 0.22 TCGA-86-8073-01 11 59834572 59834572 G T MS4A3 Missense_Mutation p.G167V 0.17 deleterious(0.04) probably_damaging(0.997) TCGA-86-8073-01 11 60157056 60157056 G T MS4A7 Missense_Mutation p.S178I 0.08 tolerated(0.1) possibly_damaging(0.486) TCGA-86-8073-01 11 60184251 60184251 C A MS4A14 Missense_Mutation p.Q637K 0.12 tolerated(0.97) benign(0.001) TCGA-86-8073-01 11 6048202 6048202 G T OR56A1 Missense_Mutation p.L245M 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-86-8073-01 11 60696178 60696178 G T TMEM132A Missense_Mutation p.E204D 0.09 deleterious(0.03) benign(0.281) TCGA-86-8073-01 11 61018742 61018742 C T PGA5 Missense_Mutation p.P386S 0.25 tolerated(0.05) benign(0.038) TCGA-86-8073-01 11 61630795 61630795 A T FADS2 Missense_Mutation p.N341I 0.10 deleterious(0) probably_damaging(0.928) TCGA-86-8073-01 11 61643463 61643463 C A FADS3 Intron 0.16 TCGA-86-8073-01 11 62389435 62389435 C A B3GAT3 5'UTR 0.20 TCGA-86-8073-01 11 62751815 62751815 G T SLC22A6 Missense_Mutation p.F116L 0.17 deleterious(0.01) possibly_damaging(0.816) TCGA-86-8073-01 11 64001510 64001510 C A DNAJC4 Intron 0.11 TCGA-86-8073-01 11 64336226 64336226 C A SLC22A11 Missense_Mutation p.A453D 0.14 tolerated(0.05) benign(0.405) TCGA-86-8073-01 11 64536954 64536954 G A SF1 Missense_Mutation p.L328F 0.16 deleterious(0.02) probably_damaging(0.952) TCGA-86-8073-01 11 64699218 64699218 C A PPP2R5B Intron 0.16 TCGA-86-8073-01 11 64825656 64825656 C G NAALADL1 Silent p.L84L 0.11 TCGA-86-8073-01 11 65266556 65266556 G T MALAT1 RNA 0.24 TCGA-86-8073-01 11 66062483 66062483 C A TMEM151A Missense_Mutation p.R256S 0.36 deleterious(0) probably_damaging(0.998) TCGA-86-8073-01 11 66191663 66191663 T G NPAS4 Missense_Mutation p.C434W 0.13 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-86-8073-01 11 6661976 6661976 A T DCHS1 Missense_Mutation p.V290E 0.13 deleterious(0) probably_damaging(0.972) TCGA-86-8073-01 11 67832051 67832051 T C CHKA Silent p.E391E 0.06 TCGA-86-8073-01 11 6789425 6789425 G C OR2AG2 Missense_Mutation p.A255G 0.14 deleterious(0.05) benign(0.232) TCGA-86-8073-01 11 6942558 6942558 C A OR2D3 Missense_Mutation p.S109Y 0.13 deleterious(0) probably_damaging(0.977) TCGA-86-8073-01 11 6942604 6942604 G T OR2D3 Silent p.G124G 0.14 TCGA-86-8073-01 11 72404808 72404808 T C ARAP1 Missense_Mutation p.H1246R 0.12 tolerated(0.13) probably_damaging(0.979) TCGA-86-8073-01 11 75115252 75115252 G A RPS3 Splice_Site p.X196_splice 0.24 TCGA-86-8073-01 11 76507596 76507596 G T TSKU Missense_Mutation p.Q312H 0.20 deleterious(0.03) possibly_damaging(0.76) TCGA-86-8073-01 11 7721903 7721903 G T OVCH2 Missense_Mutation p.P281T 0.12 deleterious(0) probably_damaging(1) TCGA-86-8073-01 11 7726113 7726113 T A OVCH2 Missense_Mutation p.Q66L 0.10 tolerated(0.21) probably_damaging(0.915) TCGA-86-8073-01 11 7817813 7817813 G C OR5P2 Missense_Mutation p.S226C 0.11 deleterious(0.01) possibly_damaging(0.798) TCGA-86-8073-01 11 78380951 78380951 C T TENM4 Missense_Mutation p.A2147T 0.06 tolerated(0.33) benign(0.003) TCGA-86-8073-01 11 82951976 82951976 A T ANKRD42 Nonsense_Mutation p.R371* 0.16 TCGA-86-8073-01 11 83641414 83641414 A T DLG2 Missense_Mutation p.S485T 0.05 tolerated(0.39) benign(0) TCGA-86-8073-01 11 85397123 85397123 C T CCDC89 Silent p.P17P 0.06 TCGA-86-8073-01 11 88042449 88042449 C A CTSC Missense_Mutation p.V175L 0.13 deleterious(0.04) benign(0.118) TCGA-86-8073-01 11 88911921 88911921 C G TYR Nonsense_Mutation p.S267* 0.11 TCGA-86-8073-01 11 89088129 89088129 C A NOX4 Splice_Site p.X406_splice 0.16 TCGA-86-8073-01 11 94153335 94153335 C A MRE11A Missense_Mutation p.D695Y 0.17 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-86-8073-01 11 9430161 9430161 A G IPO7 Missense_Mutation p.I99V 0.16 tolerated(0.29) benign(0.361) TCGA-86-8073-01 11 9500008 9500008 G T ZNF143 Missense_Mutation p.V149L 0.15 deleterious(0.02) benign(0.012) TCGA-86-8073-01 11 99872830 99872830 A T CNTN5 Missense_Mutation p.K314N 0.26 deleterious(0.01) possibly_damaging(0.733) TCGA-86-8073-01 12 100604119 100604119 A T ACTR6 Missense_Mutation p.I188L 0.15 tolerated(0.08) possibly_damaging(0.783) TCGA-86-8073-01 12 101560422 101560422 C A SLC5A8 Missense_Mutation p.G459V 0.20 deleterious(0) probably_damaging(1) TCGA-86-8073-01 12 101560423 101560423 C A SLC5A8 Nonsense_Mutation p.G459* 0.21 TCGA-86-8073-01 12 101988855 101988855 G C MYBPC1 Missense_Mutation p.E3Q 0.08 deleterious(0.01) benign(0.01) TCGA-86-8073-01 12 102061562 102061562 C A MYBPC1 Silent p.T796T 0.16 TCGA-86-8073-01 12 104378558 104378558 G T TDG Missense_Mutation p.R275I 0.07 deleterious(0.04) benign(0.297) TCGA-86-8073-01 12 110252250 110252250 T A TRPV4 Missense_Mutation p.S118C 0.11 deleterious(0) possibly_damaging(0.664) TCGA-86-8073-01 12 110511314 110511314 A T C12orf76 5'UTR 0.15 TCGA-86-8073-01 12 111785638 111785638 G T CUX2 Missense_Mutation p.G1324C 0.21 deleterious_low_confidence(0) benign(0.03) TCGA-86-8073-01 12 112711489 112711489 C A HECTD4 Nonsense_Mutation p.G494* 0.15 TCGA-86-8073-01 12 113447007 113447007 G T OAS2 Missense_Mutation p.D671Y 0.18 deleterious(0.01) probably_damaging(0.951) TCGA-86-8073-01 12 113873239 113873239 G T SDSL Silent p.V183V 0.13 TCGA-86-8073-01 12 11461760 11461760 G A PRB4 Missense_Mutation p.P53S 0.16 tolerated_low_confidence(0.17) unknown(0) TCGA-86-8073-01 12 12332829 12332829 G T LRP6 Missense_Mutation p.T487N 0.10 tolerated(0.08) possibly_damaging(0.904) TCGA-86-8073-01 12 125302250 125302250 C T SCARB1 Missense_Mutation p.V44M 0.11 tolerated(0.09) possibly_damaging(0.527) TCGA-86-8073-01 12 125396571 125396571 C T UBC Missense_Mutation p.E583K 0.16 deleterious(0) possibly_damaging(0.851) TCGA-86-8073-01 12 125397145 125397145 C G UBC Missense_Mutation p.K391N 0.15 deleterious(0) probably_damaging(0.977) TCGA-86-8073-01 12 125834565 125834565 C T TMEM132B Missense_Mutation p.P207L 0.05 tolerated(0.22) benign(0.167) TCGA-86-8073-01 12 129566310 129566310 G T TMEM132D Silent p.T639T 0.07 TCGA-86-8073-01 12 129566327 129566327 C A TMEM132D Nonsense_Mutation p.E634* 0.10 TCGA-86-8073-01 12 129566433 129566433 C A TMEM132D Silent p.L598L 0.27 TCGA-86-8073-01 12 129694154 129694154 C A TMEM132D Missense_Mutation p.V452L 0.07 deleterious(0.01) benign(0.109) TCGA-86-8073-01 12 132534888 132534888 C T EP400 Silent p.L2407L 0.12 TCGA-86-8073-01 12 133240615 133240615 C A POLE Missense_Mutation p.G894V 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-86-8073-01 12 14578095 14578095 G T ATF7IP Nonsense_Mutation p.E416* 0.16 TCGA-86-8073-01 12 14834321 14834321 A G GUCY2C Silent p.D234D 0.23 TCGA-86-8073-01 12 1992039 1992039 G C CACNA2D4 Missense_Mutation p.D493E 0.08 deleterious(0) probably_damaging(0.912) TCGA-86-8073-01 12 29446285 29446285 C A FAR2 Missense_Mutation p.A81D 0.20 deleterious(0.01) possibly_damaging(0.569) TCGA-86-8073-01 12 31135539 31135539 G A TSPAN11 Missense_Mutation p.G177S 0.13 tolerated(0.09) possibly_damaging(0.58) TCGA-86-8073-01 12 32491885 32491885 G T BICD1 Missense_Mutation p.K912N 0.30 tolerated_low_confidence(0.08) possibly_damaging(0.628) TCGA-86-8073-01 12 32491886 32491886 G T BICD1 Nonsense_Mutation p.E913* 0.29 TCGA-86-8073-01 12 32974410 32974410 C T PKP2 Silent p.E675E 0.25 TCGA-86-8073-01 12 41966543 41966543 C A PDZRN4 Nonsense_Mutation p.C654* 0.19 TCGA-86-8073-01 12 45173781 45173781 G C NELL2 Silent p.G170G 0.15 TCGA-86-8073-01 12 45567233 45567233 C T PLEKHA8P1 RNA 0.13 TCGA-86-8073-01 12 45568137 45568137 T C PLEKHA8P1 RNA 0.18 TCGA-86-8073-01 12 47472379 47472379 A G AMIGO2 Missense_Mutation p.V136A 0.16 tolerated(0.16) benign(0.014) TCGA-86-8073-01 12 49231337 49231337 C A DDX23 Missense_Mutation p.K241N 0.26 tolerated(0.07) possibly_damaging(0.802) TCGA-86-8073-01 12 49425463 49425463 C A KMT2D Missense_Mutation p.G4342V 0.18 unknown(0) TCGA-86-8073-01 12 49446092 49446092 C G KMT2D Silent p.T458T 0.12 TCGA-86-8073-01 12 50152260 50152260 G A TMBIM6 Missense_Mutation p.G202R 0.18 tolerated(0.06) possibly_damaging(0.781) TCGA-86-8073-01 12 52282888 52282888 G T ANKRD33 Missense_Mutation p.S145I 0.14 deleterious(0) possibly_damaging(0.571) TCGA-86-8073-01 12 52825412 52825412 G T KRT75 Missense_Mutation p.A262D 0.27 deleterious(0) possibly_damaging(0.783) TCGA-86-8073-01 12 53800367 53800367 A G SP1 Splice_Site p.X559_splice 0.13 TCGA-86-8073-01 12 54338815 54338815 C A HOXC13 Missense_Mutation p.S256R 0.20 deleterious(0.05) benign(0.289) TCGA-86-8073-01 12 54676240 54676240 G A HNRNPA1 Missense_Mutation p.E185K 0.17 deleterious(0.04) possibly_damaging(0.63) TCGA-86-8073-01 12 54970398 54970398 C T PDE1B Missense_Mutation p.P474S 0.14 tolerated(0.89) benign(0.004) TCGA-86-8073-01 12 55725851 55725851 A T OR6C3 Missense_Mutation p.I123F 0.12 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-86-8073-01 12 56629383 56629383 G C SLC39A5 Missense_Mutation p.E282Q 0.16 tolerated(0.29) benign(0.23) TCGA-86-8073-01 12 57108150 57108150 C T NACA Missense_Mutation p.R787Q 0.17 deleterious_low_confidence(0.02) benign(0.245) TCGA-86-8073-01 12 57864117 57864117 C A GLI1 Missense_Mutation p.R532S 0.10 tolerated(0.25) benign(0.296) TCGA-86-8073-01 12 57989791 57989791 A T PIP4K2C Missense_Mutation p.S164C 0.13 deleterious(0.04) probably_damaging(0.935) TCGA-86-8073-01 12 58009405 58009405 C A ARHGEF25 Silent p.L422L 0.17 TCGA-86-8073-01 12 58017646 58017646 G T SLC26A10 Missense_Mutation p.V361F 0.14 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 12 58165906 58165906 G A METTL1 5'UTR 0.19 TCGA-86-8073-01 12 62777985 62777985 G T USP15 Missense_Mutation p.D459Y 0.11 deleterious(0) probably_damaging(1) TCGA-86-8073-01 12 64784318 64784318 G A C12orf56 Missense_Mutation p.P10S 0.17 tolerated(0.11) probably_damaging(0.991) TCGA-86-8073-01 12 65448993 65448993 G T WIF1 Missense_Mutation p.P308H 0.15 tolerated(0.1) possibly_damaging(0.579) TCGA-86-8073-01 12 65856938 65856938 G T MSRB3 Missense_Mutation p.G139C 0.17 deleterious(0) probably_damaging(1) TCGA-86-8073-01 12 66709039 66709039 C A HELB Missense_Mutation p.P626T 0.18 deleterious(0) probably_damaging(1) TCGA-86-8073-01 12 70209193 70209193 G - RAB3IP Frame_Shift_Del p.A467Qfs*23 0.11 TCGA-86-8073-01 12 71946918 71946918 G A LGR5 Missense_Mutation p.R165K 0.18 tolerated(0.09) probably_damaging(0.982) TCGA-86-8073-01 12 71978462 71978462 C T LGR5 Missense_Mutation p.P891L 0.10 deleterious(0) benign(0.184) TCGA-86-8073-01 12 73014913 73014913 C G TRHDE Missense_Mutation p.T787R 0.12 deleterious(0) benign(0.242) TCGA-86-8073-01 12 75445045 75445045 C A KCNC2 Missense_Mutation p.C247F 0.11 deleterious(0) possibly_damaging(0.862) TCGA-86-8073-01 12 75601262 75601262 T A KCNC2 Missense_Mutation p.I168F 0.10 tolerated(0.14) benign(0.434) TCGA-86-8073-01 12 75895741 75895741 C A KRR1 Missense_Mutation p.A291S 0.19 tolerated(0.11) benign(0.002) TCGA-86-8073-01 12 76778053 76778053 C A OSBPL8 Silent p.L537L 0.18 TCGA-86-8073-01 12 77419373 77419373 C A E2F7 Missense_Mutation p.V844L 0.04 tolerated(0.72) benign(0.002) TCGA-86-8073-01 12 80655814 80655814 C A OTOGL Missense_Mutation p.T643N 0.12 deleterious(0.01) benign(0.292) TCGA-86-8073-01 12 80658819 80658819 C A OTOGL Missense_Mutation p.L676I 0.22 tolerated(0.05) possibly_damaging(0.639) TCGA-86-8073-01 12 80658854 80658854 G A OTOGL Silent p.G687G 0.20 TCGA-86-8073-01 12 81102718 81102718 G A MYF6 Silent p.V236V 0.12 TCGA-86-8073-01 12 82070580 82070580 G T PPFIA2 Missense_Mutation p.A98D 0.11 tolerated_low_confidence(0.22) benign(0.001) TCGA-86-8073-01 12 83250960 83250960 G C TMTC2 Missense_Mutation p.W85C 0.16 deleterious(0.03) probably_damaging(0.926) TCGA-86-8073-01 12 8628832 8628832 G T CLEC6A Missense_Mutation p.V161F 0.18 tolerated(0.07) possibly_damaging(0.726) TCGA-86-8073-01 12 86373396 86373396 C A MGAT4C Missense_Mutation p.G370W 0.35 deleterious(0) probably_damaging(0.996) TCGA-86-8073-01 12 88379717 88379717 C A C12orf50 Missense_Mutation p.A346S 0.15 tolerated(0.92) benign(0.005) TCGA-86-8073-01 12 9248291 9248291 G A A2M Silent p.Y619Y 0.19 TCGA-86-8073-01 12 98992439 98992439 G T SLC25A3 Missense_Mutation p.R201M 0.05 deleterious(0.03) possibly_damaging(0.643) TCGA-86-8073-01 13 101717820 101717820 G A NALCN Missense_Mutation p.H1514Y 0.12 tolerated(0.17) benign(0.225) TCGA-86-8073-01 13 102029177 102029177 C G NALCN Missense_Mutation p.R173P 0.14 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 13 103289511 103289511 G T TPP2 Missense_Mutation p.L586F 0.13 tolerated(0.18) benign(0.115) TCGA-86-8073-01 13 103289512 103289512 G T TPP2 Nonsense_Mutation p.E587* 0.13 TCGA-86-8073-01 13 103718366 103718366 G T SLC10A2 Silent p.I78I 0.11 TCGA-86-8073-01 13 108881859 108881859 G C ABHD13 Missense_Mutation p.R98P 0.21 tolerated(0.3) benign(0.121) TCGA-86-8073-01 13 109704654 109704654 A T MYO16 Missense_Mutation p.E938V 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-86-8073-01 13 111995272 111995272 G T TEX29 Missense_Mutation p.D137Y 0.19 tolerated(0.1) probably_damaging(0.934) TCGA-86-8073-01 13 113490564 113490564 A T ATP11A Silent p.T568T 0.19 TCGA-86-8073-01 13 19751625 19751625 C A TUBA3C Missense_Mutation p.K166N 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-86-8073-01 13 23915178 23915178 C A SACS Missense_Mutation p.G946V 0.08 possibly_damaging(0.802) TCGA-86-8073-01 13 25268628 25268628 C A ATP12A Nonsense_Mutation p.S481* 0.13 TCGA-86-8073-01 13 31712652 31712652 A T HSPH1 Silent p.S754S 0.16 TCGA-86-8073-01 13 32841324 32841324 G - FRY Frame_Shift_Del p.G2656Efs*66 0.08 TCGA-86-8073-01 13 36167464 36167464 G T NBEA Splice_Site p.X2393_splice 0.25 TCGA-86-8073-01 13 37596158 37596158 C A SUPT20H Missense_Mutation p.G551C 0.12 deleterious(0) possibly_damaging(0.67) TCGA-86-8073-01 13 38160341 38160341 T C POSTN Missense_Mutation p.E277G 0.14 deleterious(0.02) benign(0.026) TCGA-86-8073-01 13 38160987 38160987 C G POSTN Missense_Mutation p.V229L 0.17 deleterious(0) probably_damaging(0.998) TCGA-86-8073-01 13 38320577 38320577 G C TRPC4 Missense_Mutation p.L132V 0.21 tolerated(0.57) benign(0.012) TCGA-86-8073-01 13 39263818 39263818 C A FREM2 Silent p.I779I 0.10 TCGA-86-8073-01 13 50115948 50115948 T A RCBTB1 Silent p.R396R 0.07 TCGA-86-8073-01 13 51517456 51517456 G T RNASEH2B Splice_Site p.X146_splice 0.09 TCGA-86-8073-01 13 53419558 53419558 A T PCDH8 Splice_Site p.X947_splice 0.19 TCGA-86-8073-01 13 53624910 53624910 G C OLFM4 3'UTR 0.22 TCGA-86-8073-01 13 58207236 58207236 C T PCDH17 Missense_Mutation p.R186C 0.28 deleterious(0) probably_damaging(0.988) TCGA-86-8073-01 13 70371085 70371086 - T KLHL1 Frame_Shift_Ins p.T475Nfs*6 0.09 TCGA-86-8073-01 13 76135013 76135013 A G UCHL3 Missense_Mutation p.E60G 0.08 tolerated(0.1) benign(0.405) TCGA-86-8073-01 13 78493561 78493561 C A EDNRB Missense_Mutation p.A64S 0.07 tolerated_low_confidence(0.41) benign(0.001) TCGA-86-8073-01 13 84454368 84454368 G C SLITRK1 Silent p.L425L 0.16 TCGA-86-8073-01 13 86368626 86368626 G T SLITRK6 Missense_Mutation p.P673H 0.17 tolerated(0.06) probably_damaging(0.955) TCGA-86-8073-01 13 95055301 95055301 G T GPC6 Missense_Mutation p.G500W 0.09 deleterious(0) probably_damaging(1) TCGA-86-8073-01 13 96415922 96415922 G A DNAJC3 Missense_Mutation p.E292K 0.10 tolerated(0.42) benign(0.007) TCGA-86-8073-01 13 99582499 99582499 T C DOCK9 Missense_Mutation p.R86G 0.20 tolerated(0.2) benign(0.197) TCGA-86-8073-01 14 101453412 101453412 G T SNORD114-26 RNA 0.19 TCGA-86-8073-01 14 105405203 105405203 G T AHNAK2 Missense_Mutation p.H5529N 0.21 benign(0.246) TCGA-86-8073-01 14 105406558 105406558 G T AHNAK2 Missense_Mutation p.A5077E 0.20 benign(0.056) TCGA-86-8073-01 14 105410345 105410345 C A AHNAK2 Missense_Mutation p.V3815L 0.16 benign(0.148) TCGA-86-8073-01 14 106207966 106207966 G T IGHG1 Silent p.P279P 0.16 TCGA-86-8073-01 14 20248820 20248820 C A OR4M1 Missense_Mutation p.F113L 0.18 tolerated(0.15) benign(0.028) TCGA-86-8073-01 14 20296255 20296255 C A OR4N2 Silent p.A216A 0.09 TCGA-86-8073-01 14 20502224 20502224 G T OR4K13 Silent p.R232R 0.20 TCGA-86-8073-01 14 20845902 20845902 C A TEP1 Missense_Mutation p.W1911L 0.18 deleterious(0) probably_damaging(0.982) TCGA-86-8073-01 14 20856104 20856104 C A TEP1 Nonsense_Mutation p.E882* 0.14 TCGA-86-8073-01 14 21167996 21167996 C T RNASE4 3'UTR 0.09 TCGA-86-8073-01 14 22192540 22192540 C A TRAV3 Silent p.S105S 0.18 TCGA-86-8073-01 14 22466255 22466255 G A TRAV17 Missense_Mutation p.G62D 0.16 deleterious(0) probably_damaging(0.939) TCGA-86-8073-01 14 22580916 22580916 A G TRAV25 Missense_Mutation p.K87E 0.16 tolerated(0.15) benign(0.156) TCGA-86-8073-01 14 23744965 23744965 C A HOMEZ Missense_Mutation p.S491I 0.32 deleterious(0) probably_damaging(0.917) TCGA-86-8073-01 14 23829393 23829393 C A EFS Missense_Mutation p.R132I 0.24 deleterious(0) probably_damaging(0.997) TCGA-86-8073-01 14 23899789 23899789 C G MYH7 Missense_Mutation p.E327Q 0.11 deleterious(0.02) probably_damaging(0.945) TCGA-86-8073-01 14 24774945 24774945 A G CIDEB Missense_Mutation p.L185P 0.13 tolerated(0.2) probably_damaging(0.909) TCGA-86-8073-01 14 24976670 24976670 G T CMA1 Missense_Mutation p.P34H 0.13 deleterious(0.01) probably_damaging(1) TCGA-86-8073-01 14 25326365 25326365 T A STXBP6 Splice_Site p.X52_splice 0.18 TCGA-86-8073-01 14 31204843 31204843 A G SCFD1 3'UTR 0.16 TCGA-86-8073-01 14 32257003 32257003 G T NUBPL Silent p.L177L 0.12 TCGA-86-8073-01 14 32257004 32257004 G T NUBPL Missense_Mutation p.D178Y 0.12 deleterious(0) probably_damaging(0.992) TCGA-86-8073-01 14 34270252 34270252 G C NPAS3 Silent p.L913L 0.28 TCGA-86-8073-01 14 34904505 34904505 T G SPTSSA Missense_Mutation p.M40L 0.11 tolerated(0.43) benign(0) TCGA-86-8073-01 14 39819422 39819422 C G CTAGE5 Nonsense_Mutation p.S795* 0.18 TCGA-86-8073-01 14 44975470 44975470 G A FSCB Missense_Mutation p.P241S 0.09 tolerated(0.07) benign(0.026) TCGA-86-8073-01 14 44975866 44975866 G C FSCB Missense_Mutation p.P109A 0.18 deleterious(0.02) possibly_damaging(0.777) TCGA-86-8073-01 14 45628454 45628454 A G FANCM Missense_Mutation p.K518E 0.22 deleterious(0) benign(0.281) TCGA-86-8073-01 14 51448577 51448577 C A TRIM9 Missense_Mutation p.W616C 0.14 deleterious(0) probably_damaging(1) TCGA-86-8073-01 14 52194490 52194490 A G FRMD6 Missense_Mutation p.T538A 0.15 tolerated(0.29) benign(0.006) TCGA-86-8073-01 14 52494060 52494060 T A NID2 Missense_Mutation p.I845F 0.11 deleterious(0.01) benign(0.288) TCGA-86-8073-01 14 52508997 52508997 C G NID2 Missense_Mutation p.D551H 0.19 deleterious(0.01) probably_damaging(0.961) TCGA-86-8073-01 14 55309786 55309786 G C GCH1 3'UTR 0.12 TCGA-86-8073-01 14 58831101 58831101 A G ARID4A Missense_Mutation p.N765S 0.20 tolerated_low_confidence(1) benign(0.001) TCGA-86-8073-01 14 58832776 58832776 A G ARID4A Silent p.L1117L 0.07 TCGA-86-8073-01 14 58897413 58897413 A T KIAA0586 Silent p.I118I 0.19 TCGA-86-8073-01 14 59112126 59112126 A G DACT1 Missense_Mutation p.N262S 0.17 deleterious(0) probably_damaging(0.922) TCGA-86-8073-01 14 62462903 62462903 G T SYT16 Missense_Mutation p.D56Y 0.17 deleterious_low_confidence(0) possibly_damaging(0.807) TCGA-86-8073-01 14 62547956 62547956 A G SYT16 Silent p.K466K 0.12 TCGA-86-8073-01 14 63416974 63416974 C A KCNH5 Missense_Mutation p.D416Y 0.18 deleterious(0.01) possibly_damaging(0.883) TCGA-86-8073-01 14 64587670 64587670 C A SYNE2 Nonsense_Mutation p.S4350* 0.10 TCGA-86-8073-01 14 65194591 65194591 G T PLEKHG3 Missense_Mutation p.R81L 0.13 tolerated(0.16) benign(0.045) TCGA-86-8073-01 14 65237802 65237802 C A SPTB Missense_Mutation p.A1867S 0.16 deleterious(0.04) probably_damaging(1) TCGA-86-8073-01 14 68042148 68042148 G T PLEKHH1 Missense_Mutation p.V710F 0.15 tolerated(0.1) benign(0.094) TCGA-86-8073-01 14 68758658 68758658 G T RAD51B Missense_Mutation p.D272Y 0.12 deleterious(0) probably_damaging(0.916) TCGA-86-8073-01 14 73460008 73460008 C A ZFYVE1 Missense_Mutation p.R349L 0.11 tolerated(1) benign(0) TCGA-86-8073-01 14 73659570 73659570 A G PSEN1 Missense_Mutation p.Y256C 0.22 deleterious(0) probably_damaging(1) TCGA-86-8073-01 14 74726370 74726370 C A VSX2 Silent p.V215V 0.11 TCGA-86-8073-01 14 74876292 74876292 G T SYNDIG1L Missense_Mutation p.H52Q 0.30 tolerated(0.91) probably_damaging(0.986) TCGA-86-8073-01 14 75416138 75416138 G A PGF Silent p.S79S 0.18 TCGA-86-8073-01 14 79181408 79181408 T A NRXN3 Missense_Mutation p.V284E 0.16 deleterious(0.04) possibly_damaging(0.572) TCGA-86-8073-01 14 80677693 80677693 C A DIO2 Missense_Mutation p.L41F 0.12 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 14 81558892 81558892 C A TSHR Missense_Mutation p.P162H 0.08 deleterious(0.02) probably_damaging(0.984) TCGA-86-8073-01 14 86088879 86088879 G T FLRT2 Missense_Mutation p.G341C 0.25 deleterious(0) possibly_damaging(0.75) TCGA-86-8073-01 14 86089277 86089277 T A FLRT2 Silent p.G473G 0.14 TCGA-86-8073-01 14 89181356 89181356 C A EML5 Silent p.L457L 0.17 TCGA-86-8073-01 14 89202855 89202855 T A EML5 Missense_Mutation p.Q301L 0.18 deleterious(0.01) benign(0.26) TCGA-86-8073-01 14 89206766 89206766 T C EML5 Missense_Mutation p.I226V 0.21 tolerated(0.5) benign(0.001) TCGA-86-8073-01 14 89628831 89628831 C A FOXN3 Missense_Mutation p.R467L 0.13 deleterious(0) probably_damaging(0.998) TCGA-86-8073-01 14 92583901 92583901 T A NDUFB1 Missense_Mutation p.L74F 0.13 tolerated(0.06) probably_damaging(0.934) TCGA-86-8073-01 14 94063745 94063745 C T UNC79 Silent p.H900H 0.10 TCGA-86-8073-01 14 94745002 94745002 G A PPP4R4 3'UTR 0.14 TCGA-86-8073-01 14 94914991 94914991 A T SERPINA11 Missense_Mutation p.S41T 0.15 tolerated(0.29) benign(0.016) TCGA-86-8073-01 14 94962979 94962979 G T SERPINA12 Silent p.A212A 0.14 TCGA-86-8073-01 15 100996236 100996236 C A CERS3 Silent p.T287T 0.26 TCGA-86-8073-01 15 101020250 101020250 A T CERS3 Missense_Mutation p.W137R 0.09 deleterious(0) probably_damaging(1) TCGA-86-8073-01 15 22473090 22473090 G A IGHV4OR15-8 Missense_Mutation p.P61S 0.10 deleterious(0.01) possibly_damaging(0.544) TCGA-86-8073-01 15 25222033 25222033 G T SNRPN Missense_Mutation p.A93S 0.15 tolerated(0.19) benign(0.057) TCGA-86-8073-01 15 25463658 25463658 G C SNORD115-27 5'Flank 0.27 TCGA-86-8073-01 15 25468314 25468314 C A SNORD115-27 3'Flank 0.22 TCGA-86-8073-01 15 25468315 25468315 C A SNORD115-27 3'Flank 0.22 TCGA-86-8073-01 15 25959153 25959153 C A ATP10A Missense_Mutation p.S671I 0.19 deleterious(0.03) possibly_damaging(0.515) TCGA-86-8073-01 15 27777906 27777906 C A GABRG3 Missense_Mutation p.S428Y 0.17 tolerated(0.18) probably_damaging(0.915) TCGA-86-8073-01 15 28447295 28447295 C A HERC2 Missense_Mutation p.E2527D 0.21 benign(0.001) TCGA-86-8073-01 15 40580899 40580899 C A PLCB2 3'UTR 0.19 TCGA-86-8073-01 15 40866103 40866103 G A RPUSD2 Silent p.V427V 0.20 TCGA-86-8073-01 15 48451029 48451029 C T MYEF2 Missense_Mutation p.G270S 0.22 deleterious(0) probably_damaging(1) TCGA-86-8073-01 15 48566828 48566828 C G SLC12A1 Missense_Mutation p.I821M 0.26 tolerated(0.06) benign(0.379) TCGA-86-8073-01 15 52011727 52011727 T C SCG3 3'UTR 0.26 TCGA-86-8073-01 15 57730401 57730401 G T CGNL1 Silent p.S68S 0.08 TCGA-86-8073-01 15 59499436 59499436 T C LDHAL6B Silent p.L99L 0.12 TCGA-86-8073-01 15 65759419 65759419 C T DPP8 Missense_Mutation p.C576Y 0.13 tolerated(0.93) benign(0.004) TCGA-86-8073-01 15 71403690 71403690 G T CT62 Missense_Mutation p.P71T 0.08 deleterious_low_confidence(0) unknown(0) TCGA-86-8073-01 15 72954860 72954861 AG - GOLGA6B Frame_Shift_Del p.K372Nfs*7 0.11 TCGA-86-8073-01 15 74032374 74032374 G T C15orf59 Missense_Mutation p.P256T 0.16 deleterious(0.03) benign(0.002) TCGA-86-8073-01 15 74032375 74032375 G T C15orf59 Silent p.A255A 0.16 TCGA-86-8073-01 15 74290784 74290784 C G PML Missense_Mutation p.S190C 0.15 deleterious(0) probably_damaging(0.928) TCGA-86-8073-01 15 74554862 74554862 C T CCDC33 Silent p.I89I 0.13 TCGA-86-8073-01 15 75782642 75782642 C T PTPN9 Missense_Mutation p.M323I 0.13 tolerated(0.12) benign(0) TCGA-86-8073-01 15 76496121 76496121 C A C15orf27 Missense_Mutation p.T354K 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-86-8073-01 15 77329423 77329423 T A PSTPIP1 Missense_Mutation p.L386Q 0.22 deleterious(0) probably_damaging(0.954) TCGA-86-8073-01 15 77763275 77763275 A C HMG20A Missense_Mutation p.R158S 0.07 deleterious(0) benign(0.309) TCGA-86-8073-01 15 78219158 78219158 G T RP11-114H24.7 3'Flank 0.07 TCGA-86-8073-01 15 78393505 78393505 C A SH2D7 Missense_Mutation p.P304T 0.19 tolerated(0.38) benign(0.013) TCGA-86-8073-01 15 81517713 81517713 G C IL16 5'Flank 0.17 TCGA-86-8073-01 15 81664974 81664974 C T TMC3 Missense_Mutation p.R65H 0.15 deleterious(0) probably_damaging(0.987) TCGA-86-8073-01 15 82336562 82336562 C A MEX3B Missense_Mutation p.A217S 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-86-8073-01 15 83935602 83935602 C A BNC1 Nonsense_Mutation p.G141* 0.13 TCGA-86-8073-01 15 84700170 84700170 T C ADAMTSL3 Silent p.C1580C 0.15 TCGA-86-8073-01 15 85345442 85345442 G C ZNF592 Missense_Mutation p.E1208Q 0.35 tolerated(0.22) benign(0.334) TCGA-86-8073-01 15 85478699 85478699 C T SLC28A1 Missense_Mutation p.R511C 0.16 deleterious(0) probably_damaging(1) TCGA-86-8073-01 15 89395200 89395200 C A ACAN Silent p.T734T 0.26 TCGA-86-8073-01 15 90020861 90020861 G T RHCG Missense_Mutation p.H333Q 0.11 deleterious(0.04) benign(0.009) TCGA-86-8073-01 15 90340926 90340926 C A ANPEP Silent p.A679A 0.07 TCGA-86-8073-01 15 90892072 90892072 C G GABARAPL3 3'UTR 0.08 TCGA-86-8073-01 15 92977530 92977530 A C ST8SIA2 Missense_Mutation p.N72T 0.16 benign(0.065) TCGA-86-8073-01 16 1250546 1250546 G T CACNA1H Missense_Mutation p.G365V 0.30 deleterious(0.04) probably_damaging(1) TCGA-86-8073-01 16 1394526 1394526 G T BAIAP3 Missense_Mutation p.Q588H 0.24 tolerated(0.18) possibly_damaging(0.498) TCGA-86-8073-01 16 15781254 15781254 G A NDE1 Missense_Mutation p.D137N 0.17 deleterious(0.04) probably_damaging(0.939) TCGA-86-8073-01 16 17232211 17232211 C T XYLT1 Splice_Site p.X588_splice 0.23 TCGA-86-8073-01 16 19871841 19871841 G T GPRC5B Missense_Mutation p.T398K 0.28 deleterious(0) benign(0.424) TCGA-86-8073-01 16 1995911 1995911 C T RPL3L Silent p.G324G 0.25 TCGA-86-8073-01 16 1995913 1995913 C T RPL3L Missense_Mutation p.G324R 0.24 deleterious(0) probably_damaging(0.953) TCGA-86-8073-01 16 2004081 2004081 C A RPL3L Silent p.R24R 0.40 TCGA-86-8073-01 16 20696582 20696582 G A ACSM1 Silent p.D112D 0.07 TCGA-86-8073-01 16 20851772 20851772 T C AC004381.6 Silent p.F536F 0.19 TCGA-86-8073-01 16 23200890 23200890 G C SCNN1G Missense_Mutation p.R172S 0.16 tolerated(0.88) benign(0.007) TCGA-86-8073-01 16 24800859 24800859 G T TNRC6A Missense_Mutation p.S299I 0.21 deleterious(0.03) possibly_damaging(0.448) TCGA-86-8073-01 16 27751437 27751437 G T KIAA0556 Nonsense_Mutation p.G607* 0.33 TCGA-86-8073-01 16 2946546 2946546 C G FLYWCH2 Silent p.A32A 0.21 TCGA-86-8073-01 16 30724003 30724003 A T SRCAP Missense_Mutation p.N666I 0.18 unknown(0) TCGA-86-8073-01 16 30999192 30999192 G T HSD3B7 Missense_Mutation p.R266S 0.19 tolerated(0.15) benign(0.063) TCGA-86-8073-01 16 31092492 31092492 C A ZNF646 Missense_Mutation p.A1616D 0.13 tolerated(0.6) benign(0.017) TCGA-86-8073-01 16 31230653 31230653 G A TRIM72 Missense_Mutation p.G177D 0.17 tolerated(0.2) benign(0.036) TCGA-86-8073-01 16 31424172 31424172 C G ITGAD Missense_Mutation p.S574C 0.14 deleterious(0.02) benign(0.024) TCGA-86-8073-01 16 31426237 31426237 G A ITGAD Silent p.V736V 0.15 TCGA-86-8073-01 16 31497105 31497105 C A SLC5A2 Missense_Mutation p.A120E 0.21 deleterious(0) probably_damaging(1) TCGA-86-8073-01 16 49670920 49670920 G T ZNF423 Missense_Mutation p.H715N 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-86-8073-01 16 53504351 53504351 G T RBL2 Missense_Mutation p.G768W 0.16 deleterious(0) possibly_damaging(0.877) TCGA-86-8073-01 16 65015954 65015954 A T CDH11 Missense_Mutation p.I417K 0.28 deleterious(0) benign(0.327) TCGA-86-8073-01 16 66413445 66413445 G T CDH5 Missense_Mutation p.G69C 0.23 deleterious(0) probably_damaging(1) TCGA-86-8073-01 16 66413446 66413446 G T CDH5 Missense_Mutation p.G69V 0.23 deleterious(0) probably_damaging(0.998) TCGA-86-8073-01 16 68200749 68200749 T A NFATC3 Silent p.I535I 0.22 TCGA-86-8073-01 16 68597050 68597051 - T ZFP90 Frame_Shift_Ins p.W121Lfs*4 0.16 TCGA-86-8073-01 16 70187392 70187392 G A PDPR Silent p.K717K 0.07 TCGA-86-8073-01 16 70208131 70208131 G A CLEC18C 5'UTR 0.21 TCGA-86-8073-01 16 71799424 71799424 C A AP1G1 Missense_Mutation p.D239Y 0.19 deleterious(0) probably_damaging(0.911) TCGA-86-8073-01 16 74708906 74708906 T A MLKL Missense_Mutation p.I445F 0.24 deleterious(0) probably_damaging(0.997) TCGA-86-8073-01 16 75663384 75663384 C G KARS Missense_Mutation p.E522Q 0.06 deleterious(0) probably_damaging(1) TCGA-86-8073-01 16 77228444 77228444 G C MON1B Missense_Mutation p.D230H 0.16 deleterious(0.02) possibly_damaging(0.803) TCGA-86-8073-01 16 81145908 81145908 G A PKD1L2 RNA 0.18 TCGA-86-8073-01 16 81145909 81145909 G T PKD1L2 RNA 0.18 TCGA-86-8073-01 16 83378554 83378554 C A CDH13 Silent p.R289R 0.22 TCGA-86-8073-01 16 89967134 89967134 G T TCF25 Missense_Mutation p.C438F 0.26 tolerated(0.49) benign(0.001) TCGA-86-8073-01 16 90128874 90128874 C T PRDM7 Missense_Mutation p.S182N 0.18 tolerated(0.1) benign(0.047) TCGA-86-8073-01 16 9857702 9857702 G - GRIN2A Frame_Shift_Del p.F1234Sfs*51 0.23 TCGA-86-8073-01 16 9892237 9892237 C A GRIN2A Silent p.G751G 0.22 TCGA-86-8073-01 16 9923462 9923462 A G GRIN2A Missense_Mutation p.W609R 0.14 deleterious(0) probably_damaging(1) TCGA-86-8073-01 17 10219325 10219325 C A MYH13 Silent p.T1252T 0.17 TCGA-86-8073-01 17 10323502 10323502 C G MYH8 Missense_Mutation p.A15P 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-86-8073-01 17 10541152 10541152 T A MYH3 Missense_Mutation p.Q1277L 0.32 deleterious(0.01) benign(0.014) TCGA-86-8073-01 17 11607519 11607519 G T DNAH9 Splice_Site p.X1718_splice 0.09 TCGA-86-8073-01 17 15930887 15930887 A G TTC19 3'UTR 0.23 TCGA-86-8073-01 17 1673260 1673260 C A SERPINF1 Silent p.R67R 0.12 TCGA-86-8073-01 17 18916819 18916819 T A SLC5A10 Missense_Mutation p.L376Q 0.27 deleterious(0) probably_damaging(1) TCGA-86-8073-01 17 19644497 19644497 T A ALDH3A1 Missense_Mutation p.N239I 0.20 deleterious(0) probably_damaging(1) TCGA-86-8073-01 17 27825486 27825486 A T TAOK1 Missense_Mutation p.M384L 0.26 tolerated(0.15) benign(0) TCGA-86-8073-01 17 28616430 28616430 T C BLMH Silent p.E94E 0.06 TCGA-86-8073-01 17 29556952 29556952 G T NF1 Missense_Mutation p.G984W 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-86-8073-01 17 29645797 29645797 C T EVI2A Missense_Mutation p.E102K 0.16 tolerated(0.26) benign(0.027) TCGA-86-8073-01 17 30498086 30498086 T C RHOT1 Missense_Mutation p.I21T 0.22 deleterious(0) probably_damaging(0.978) TCGA-86-8073-01 17 34340339 34340339 G C CCL23 Silent p.T104T 0.34 TCGA-86-8073-01 17 35896111 35896111 T A SYNRG Silent p.L1212L 0.17 TCGA-86-8073-01 17 36869375 36869375 C A MLLT6 Intron 0.06 TCGA-86-8073-01 17 37188568 37188568 C A LRRC37A11P RNA 0.20 TCGA-86-8073-01 17 3789005 3789005 T A CAMKK1 5'UTR 0.15 TCGA-86-8073-01 17 38922842 38922842 G A KRT26 Silent p.V444V 0.11 TCGA-86-8073-01 17 39019540 39019540 A T KRT12 Missense_Mutation p.L384Q 0.10 deleterious(0) probably_damaging(1) TCGA-86-8073-01 17 39081745 39081745 G T KRT23 Missense_Mutation p.H335N 0.14 tolerated(1) possibly_damaging(0.849) TCGA-86-8073-01 17 39305727 39305727 G T KRTAP4-5 Missense_Mutation p.P98H 0.11 unknown(0) TCGA-86-8073-01 17 39340967 39340967 G A KRTAP4-1 Missense_Mutation p.P47L 0.12 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 17 39340968 39340968 G T KRTAP4-1 Missense_Mutation p.P47T 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-86-8073-01 17 39382986 39382986 C A KRTAP9-2 Missense_Mutation p.T27N 0.16 deleterious(0.01) unknown(0) TCGA-86-8073-01 17 39538423 39538423 A T KRT34 Missense_Mutation p.C68S 0.05 tolerated(0.07) probably_damaging(0.998) TCGA-86-8073-01 17 3989093 3989093 C G ZZEF1 Silent p.V839V 0.17 TCGA-86-8073-01 17 40254248 40254248 T A DHX58 Missense_Mutation p.R613W 0.21 deleterious(0) probably_damaging(0.918) TCGA-86-8073-01 17 41345114 41345114 C T NBR1 Silent p.L359L 0.09 TCGA-86-8073-01 17 42882322 42882322 A T GJC1 Silent p.P288P 0.15 TCGA-86-8073-01 17 42882872 42882872 C A GJC1 Missense_Mutation p.G105V 0.06 tolerated(0.3) benign(0.117) TCGA-86-8073-01 17 43101773 43101773 C A DCAKD 3'UTR 0.15 TCGA-86-8073-01 17 4453604 4453604 C A MYBBP1A Silent p.V356V 0.14 TCGA-86-8073-01 17 45361827 45361827 C G ITGB3 Missense_Mutation p.S127C 0.17 deleterious(0.01) possibly_damaging(0.685) TCGA-86-8073-01 17 45787862 45787862 A T TBKBP1 Splice_Site p.X574_splice 0.10 TCGA-86-8073-01 17 45916941 45916941 T A SCRN2 Missense_Mutation p.Y142F 0.16 deleterious(0.02) benign(0.25) TCGA-86-8073-01 17 46233866 46233866 G A SKAP1 Intron 0.09 TCGA-86-8073-01 17 46607761 46607761 G T HOXB1 Missense_Mutation p.P169H 0.19 deleterious(0.05) benign(0.176) TCGA-86-8073-01 17 46629511 46629511 G T HOXB3 Missense_Mutation p.P109H 0.21 deleterious(0.01) possibly_damaging(0.711) TCGA-86-8073-01 17 46937757 46937757 G A CALCOCO2 Missense_Mutation p.D388N 0.18 tolerated(0.53) benign(0.003) TCGA-86-8073-01 17 47041694 47041694 C A GIP Missense_Mutation p.A79S 0.18 deleterious(0.05) possibly_damaging(0.899) TCGA-86-8073-01 17 47115600 47115600 C G IGF2BP1 Missense_Mutation p.Q158E 0.17 tolerated(1) benign(0.001) TCGA-86-8073-01 17 48263150 48263150 C T COL1A1 Missense_Mutation p.D1413N 0.18 unknown(0) TCGA-86-8073-01 17 48695604 48695604 G T CACNA1G Missense_Mutation p.C1776F 0.13 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 17 48741078 48741078 C A ABCC3 Silent p.P345P 0.12 TCGA-86-8073-01 17 48778048 48778048 T A ANKRD40 Missense_Mutation p.N55I 0.13 deleterious(0) probably_damaging(0.995) TCGA-86-8073-01 17 51902288 51902288 C A KIF2B Missense_Mutation p.H632N 0.18 deleterious(0.02) benign(0.048) TCGA-86-8073-01 17 51902316 51902316 C T KIF2B Missense_Mutation p.S641F 0.08 tolerated(0.18) benign(0.235) TCGA-86-8073-01 17 54543727 54543727 G T ANKFN1 Missense_Mutation p.G526V 0.15 deleterious(0.01) probably_damaging(0.989) TCGA-86-8073-01 17 55962651 55962651 C A CUEDC1 Missense_Mutation p.G92V 0.12 tolerated(0.13) benign(0.094) TCGA-86-8073-01 17 56283680 56283680 C A MKS1 Missense_Mutation p.G518W 0.16 deleterious(0.02) probably_damaging(0.986) TCGA-86-8073-01 17 56326989 56326989 A G LPO Missense_Mutation p.E169G 0.17 deleterious(0) probably_damaging(0.959) TCGA-86-8073-01 17 56349150 56349150 C T MPO Silent p.E632E 0.08 TCGA-86-8073-01 17 56387878 56387878 C T BZRAP1 Missense_Mutation p.A1232T 0.11 tolerated(0.11) benign(0.009) TCGA-86-8073-01 17 56400038 56400038 C A BZRAP1 Nonsense_Mutation p.E432* 0.06 TCGA-86-8073-01 17 56573545 56573545 C A MTMR4 Missense_Mutation p.G653V 0.13 tolerated(0.08) benign(0.082) TCGA-86-8073-01 17 57771251 57771251 T G CLTC 3'UTR 0.19 TCGA-86-8073-01 17 59560359 59560359 G T TBX4 Missense_Mutation p.D374Y 0.14 deleterious(0.01) probably_damaging(0.948) TCGA-86-8073-01 17 60483851 60483851 A T EFCAB3 Nonsense_Mutation p.R219* 0.09 TCGA-86-8073-01 17 61611571 61611571 C T KCNH6 Missense_Mutation p.P334S 0.13 deleterious(0.04) possibly_damaging(0.893) TCGA-86-8073-01 17 61769725 61769725 G T MAP3K3 Missense_Mutation p.W564L 0.16 deleterious(0) probably_damaging(0.974) TCGA-86-8073-01 17 65962701 65962701 C T BPTF Missense_Mutation p.A2823V 0.15 probably_damaging(0.97) TCGA-86-8073-01 17 6716356 6716356 C G TEKT1 Missense_Mutation p.D216H 0.20 deleterious(0.01) probably_damaging(0.918) TCGA-86-8073-01 17 67186559 67186559 C A ABCA10 Missense_Mutation p.V691L 0.18 deleterious(0.03) benign(0.001) TCGA-86-8073-01 17 67188717 67188717 C A ABCA10 Nonsense_Mutation p.G620* 0.13 TCGA-86-8073-01 17 6978402 6978402 G T CLEC10A Missense_Mutation p.L308M 0.22 tolerated(0.05) benign(0.091) TCGA-86-8073-01 17 71354280 71354280 C A SDK2 Missense_Mutation p.W1844L 0.20 deleterious(0) probably_damaging(0.967) TCGA-86-8073-01 17 71377059 71377059 G T SDK2 Missense_Mutation p.P1579H 0.17 deleterious(0) possibly_damaging(0.886) TCGA-86-8073-01 17 71390438 71390438 C A SDK2 Silent p.V1206V 0.15 TCGA-86-8073-01 17 72233506 72233506 C T TTYH2 Missense_Mutation p.A163V 0.20 deleterious(0.04) benign(0.022) TCGA-86-8073-01 17 72537651 72537651 G T CD300C 3'UTR 0.09 TCGA-86-8073-01 17 72915758 72915758 C A USH1G Silent p.P391P 0.11 TCGA-86-8073-01 17 73490977 73490977 G T KIAA0195 Missense_Mutation p.V864L 0.14 deleterious(0.01) probably_damaging(0.989) TCGA-86-8073-01 17 73490997 73490997 C - KIAA0195 Frame_Shift_Del p.L871Wfs*37 0.18 TCGA-86-8073-01 17 73657128 73657128 C A RECQL5 Missense_Mutation p.R298I 0.18 deleterious(0) probably_damaging(1) TCGA-86-8073-01 17 73659002 73659002 T A RECQL5 Nonsense_Mutation p.K110* 0.15 TCGA-86-8073-01 17 74155589 74155589 G A RNF157 Silent p.L377L 0.20 TCGA-86-8073-01 17 7536624 7536624 A G SHBG Missense_Mutation p.H388R 0.24 deleterious(0) possibly_damaging(0.743) TCGA-86-8073-01 17 7578275 7578275 G A TP53 Nonsense_Mutation p.Q192* 0.20 TCGA-86-8073-01 17 76046032 76046032 G T TNRC6C Missense_Mutation p.A297S 0.14 tolerated(0.44) benign(0.182) TCGA-86-8073-01 17 76399740 76399740 G T PGS1 Missense_Mutation p.Q324H 0.12 tolerated(0.1) benign(0.006) TCGA-86-8073-01 17 7640409 7640409 A T DNAH2 Missense_Mutation p.N335Y 0.23 probably_damaging(1) TCGA-86-8073-01 17 76803278 76803278 C A USP36 Missense_Mutation p.E616D 0.35 tolerated(0.22) benign(0.066) TCGA-86-8073-01 17 78599530 78599531 - T RPTOR Frame_Shift_Ins p.G69Wfs*56 0.21 TCGA-86-8073-01 17 79863984 79863984 C A PCYT2 Missense_Mutation p.A295S 0.14 tolerated(0.14) possibly_damaging(0.873) TCGA-86-8073-01 17 8053822 8053822 C T PER1 Missense_Mutation p.R68Q 0.20 tolerated(0.3) probably_damaging(0.974) TCGA-86-8073-01 17 80758783 80758783 G T TBCD Missense_Mutation p.E287D 0.16 tolerated(0.6) benign(0.008) TCGA-86-8073-01 17 8812396 8812396 G T PIK3R5 Silent p.R67R 0.36 TCGA-86-8073-01 18 10672714 10672714 G T PIEZO2 Missense_Mutation p.P2660Q 0.07 deleterious(0) probably_damaging(0.941) TCGA-86-8073-01 18 12725465 12725465 C T PSMG2 Missense_Mutation p.R244W 0.14 deleterious(0.02) possibly_damaging(0.462) TCGA-86-8073-01 18 13884960 13884960 C A MC2R Silent p.L186L 0.08 TCGA-86-8073-01 18 19321594 19321594 G T MIB1 Missense_Mutation p.R17L 0.54 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 18 21269753 21269753 G T LAMA3 Missense_Mutation p.A36S 0.75 benign(0.011) TCGA-86-8073-01 18 24039635 24039635 C G KCTD1 Silent p.T188T 0.09 TCGA-86-8073-01 18 28659876 28659876 C A DSC2 Missense_Mutation p.D534Y 0.05 deleterious(0) probably_damaging(1) TCGA-86-8073-01 18 2945727 2945727 C T LPIN2 Intron 0.11 TCGA-86-8073-01 18 29493345 29493345 C T TRAPPC8 Missense_Mutation p.S253N 0.51 tolerated(0.61) benign(0.02) TCGA-86-8073-01 18 30092550 30092550 T C WBP11P1 RNA 0.09 TCGA-86-8073-01 18 30254581 30254581 C A KLHL14 3'UTR 0.46 TCGA-86-8073-01 18 30254582 30254582 C A KLHL14 3'UTR 0.46 TCGA-86-8073-01 18 31226244 31226244 G A ASXL3 Silent p.L94L 0.45 TCGA-86-8073-01 18 31320166 31320166 G T ASXL3 Missense_Mutation p.R933L 0.46 probably_damaging(0.927) TCGA-86-8073-01 18 31325174 31325174 G T ASXL3 Missense_Mutation p.G1788C 0.47 benign(0.055) TCGA-86-8073-01 18 32374168 32374168 C G DTNA Missense_Mutation p.Q106E 0.12 tolerated(0.26) benign(0.279) TCGA-86-8073-01 18 34261508 34261508 G T FHOD3 Nonsense_Mutation p.E474* 0.27 TCGA-86-8073-01 18 34297950 34297950 C A FHOD3 Missense_Mutation p.Q722K 0.20 tolerated(0.47) benign(0.117) TCGA-86-8073-01 18 42530482 42530482 C T SETBP1 Missense_Mutation p.P393S 0.27 tolerated(0.84) benign(0.004) TCGA-86-8073-01 18 43205673 43205673 G C SLC14A2 Missense_Mutation p.S59T 0.06 tolerated(0.16) possibly_damaging(0.72) TCGA-86-8073-01 18 43262346 43262346 G T SLC14A2 Silent p.T875T 0.14 TCGA-86-8073-01 18 43422133 43422133 C A SIGLEC15 Missense_Mutation p.A323D 0.07 tolerated_low_confidence(0.06) benign(0.274) TCGA-86-8073-01 18 46956761 46956761 C A DYM Nonsense_Mutation p.G2* 0.16 TCGA-86-8073-01 18 47093908 47093909 - T LIPG Frame_Shift_Ins p.A127Gfs*11 0.16 TCGA-86-8073-01 18 47802046 47802046 T A MBD1 Missense_Mutation p.H239L 0.08 tolerated(0.4) benign(0.016) TCGA-86-8073-01 18 52899875 52899875 C A TCF4 Missense_Mutation p.S607I 0.18 tolerated(0.06) benign(0.039) TCGA-86-8073-01 18 56247564 56247564 C T ALPK2 Silent p.K148K 0.16 TCGA-86-8073-01 18 56892864 56892864 A - GRP Frame_Shift_Del p.R94Efs*29 0.19 TCGA-86-8073-01 18 5956348 5956348 C A L3MBTL4 Silent p.T581T 0.08 TCGA-86-8073-01 18 61264450 61264450 C G SERPINB13 Silent p.T343T 0.09 TCGA-86-8073-01 18 63511051 63511051 C G CDH7 Missense_Mutation p.L329V 0.13 tolerated(0.25) possibly_damaging(0.808) TCGA-86-8073-01 18 66351691 66351691 C G TMX3 Missense_Mutation p.E256D 0.12 tolerated(0.34) benign(0.02) TCGA-86-8073-01 18 70417473 70417473 C A NETO1 Missense_Mutation p.L455F 0.12 tolerated_low_confidence(0.71) possibly_damaging(0.823) TCGA-86-8073-01 18 72346981 72346981 G A ZNF407 Missense_Mutation p.V1336I 0.18 tolerated(0.08) benign(0.041) TCGA-86-8073-01 18 76754062 76754062 C A SALL3 Missense_Mutation p.Q691K 0.17 deleterious(0) benign(0.331) TCGA-86-8073-01 18 8825370 8825370 G T SOGA2 Missense_Mutation p.A1288S 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-86-8073-01 19 12951847 12951847 C A MAST1 Missense_Mutation p.T72N 0.07 deleterious(0.05) benign(0.009) TCGA-86-8073-01 19 14083889 14083889 G C RFX1 Missense_Mutation p.A327G 0.12 tolerated(0.11) benign(0.01) TCGA-86-8073-01 19 15483726 15483726 C A AKAP8 Missense_Mutation p.G266V 0.22 deleterious(0.02) possibly_damaging(0.526) TCGA-86-8073-01 19 15483727 15483727 C A AKAP8 Missense_Mutation p.G266C 0.23 deleterious(0.03) possibly_damaging(0.881) TCGA-86-8073-01 19 15483728 15483728 G A AKAP8 Silent p.G265G 0.23 TCGA-86-8073-01 19 15769319 15769319 G C CYP4F3 Missense_Mutation p.S423T 0.05 deleterious(0.01) benign(0.183) TCGA-86-8073-01 19 15794432 15794432 C T CYP4F12 Silent p.A259A 0.38 TCGA-86-8073-01 19 16860134 16860134 C G NWD1 Silent p.L227L 0.17 TCGA-86-8073-01 19 16860465 16860465 G T NWD1 Missense_Mutation p.V338L 0.22 deleterious(0.03) benign(0.065) TCGA-86-8073-01 19 18507022 18507022 G C LRRC25 Missense_Mutation p.A251G 0.20 tolerated(0.42) benign(0) TCGA-86-8073-01 19 22154754 22154754 G C ZNF208 Missense_Mutation p.P1028A 0.11 deleterious(0.04) benign(0.079) TCGA-86-8073-01 19 22271877 22271877 G C ZNF257 Missense_Mutation p.R442P 0.20 tolerated(0.2) possibly_damaging(0.7) TCGA-86-8073-01 19 23414979 23414979 C A ZNF724P Silent p.L40L 0.09 TCGA-86-8073-01 19 307381 307381 G A MIER2 Missense_Mutation p.P452S 0.14 tolerated(0.31) benign(0.005) TCGA-86-8073-01 19 31768670 31768670 C A TSHZ3 Missense_Mutation p.G677W 0.07 deleterious(0.01) possibly_damaging(0.695) TCGA-86-8073-01 19 31769261 31769261 C A TSHZ3 Missense_Mutation p.V480F 0.31 tolerated(0.05) benign(0.1) TCGA-86-8073-01 19 31769262 31769262 C T TSHZ3 Silent p.A479A 0.31 TCGA-86-8073-01 19 31769912 31769912 G A TSHZ3 Silent p.L263L 0.05 TCGA-86-8073-01 19 34264012 34264012 C A CHST8 3'UTR 0.40 TCGA-86-8073-01 19 35174079 35174079 A G ZNF302 Silent p.P50P 0.15 TCGA-86-8073-01 19 35504458 35504458 G A GRAMD1A Missense_Mutation p.V245M 0.28 tolerated(0.2) benign(0.386) TCGA-86-8073-01 19 35655065 35655065 C A FXYD5 Missense_Mutation p.P100H 0.19 deleterious(0.01) probably_damaging(0.979) TCGA-86-8073-01 19 35761417 35761417 G T USF2 Missense_Mutation p.R166L 0.05 deleterious(0) probably_damaging(0.93) TCGA-86-8073-01 19 36233669 36233669 C A U2AF1L4 Nonsense_Mutation p.E147* 0.06 TCGA-86-8073-01 19 36577668 36577668 G T WDR62 Missense_Mutation p.Q574H 0.17 deleterious(0) probably_damaging(0.996) TCGA-86-8073-01 19 3813919 3813919 G T ZFR2 Missense_Mutation p.P714H 0.16 tolerated(0.1) benign(0.201) TCGA-86-8073-01 19 3834883 3834883 G T ZFR2 Missense_Mutation p.P51Q 0.35 deleterious(0) benign(0.047) TCGA-86-8073-01 19 38597180 38597180 A T SIPA1L3 Missense_Mutation p.D678V 0.12 deleterious(0) possibly_damaging(0.848) TCGA-86-8073-01 19 38743601 38743601 G T PPP1R14A Missense_Mutation p.P72H 0.18 deleterious(0) probably_damaging(1) TCGA-86-8073-01 19 38948696 38948696 G T RYR1 Missense_Mutation p.R644L 0.21 probably_damaging(0.972) TCGA-86-8073-01 19 38949887 38949887 C T RYR1 Missense_Mutation p.R757C 0.07 probably_damaging(1) TCGA-86-8073-01 19 40328480 40328480 C A FBL Missense_Mutation p.G185C 0.11 deleterious(0.02) probably_damaging(1) TCGA-86-8073-01 19 40368372 40368372 C A FCGBP Missense_Mutation p.A4326S 0.11 possibly_damaging(0.809) TCGA-86-8073-01 19 41063310 41063310 G A SPTBN4 Splice_Site p.X1890_splice 0.16 TCGA-86-8073-01 19 42584948 42584948 G T ZNF574 Silent p.A730A 0.17 TCGA-86-8073-01 19 43228129 43228129 G A PSG3 3'UTR 0.17 TCGA-86-8073-01 19 43243206 43243206 C A PSG3 Missense_Mutation p.A34S 0.09 deleterious(0.02) possibly_damaging(0.728) TCGA-86-8073-01 19 43514123 43514123 T A PSG11 3'UTR 0.12 TCGA-86-8073-01 19 44469442 44469442 A T ZNF221 Missense_Mutation p.K89M 0.11 tolerated(1) benign(0) TCGA-86-8073-01 19 44590985 44590985 G T ZNF284 Nonsense_Mutation p.E452* 0.05 TCGA-86-8073-01 19 45404028 45404028 C T TOMM40 Silent p.L229L 0.15 TCGA-86-8073-01 19 45515474 45515474 G T RELB Silent p.S148S 0.14 TCGA-86-8073-01 19 48863335 48863335 C A TMEM143 Silent p.R121R 0.09 TCGA-86-8073-01 19 49110449 49110449 G T SPACA4 Missense_Mutation p.G72C 0.23 deleterious(0) probably_damaging(1) TCGA-86-8073-01 19 49261225 49261225 G A FGF21 Silent p.L126L 0.12 TCGA-86-8073-01 19 49363704 49363704 C A PLEKHA4 Missense_Mutation p.G127C 0.20 deleterious(0) probably_damaging(1) TCGA-86-8073-01 19 49539530 49539530 C A CGB1 Missense_Mutation p.G14C 0.14 tolerated(0.09) probably_damaging(0.978) TCGA-86-8073-01 19 49868844 49868844 G T DKKL1 Nonsense_Mutation p.E88* 0.24 TCGA-86-8073-01 19 49933894 49933894 C T SLC17A7 Missense_Mutation p.S522N 0.13 tolerated(0.36) benign(0.045) TCGA-86-8073-01 19 49965148 49965148 G A ALDH16A1 Missense_Mutation p.R256H 0.36 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 19 50154183 50154183 G T SCAF1 Silent p.T179T 0.16 TCGA-86-8073-01 19 50547988 50547988 G T ZNF473 Missense_Mutation p.Q96H 0.11 deleterious(0.01) possibly_damaging(0.781) TCGA-86-8073-01 19 51207759 51207759 T C SHANK1 Missense_Mutation p.R364G 0.17 possibly_damaging(0.824) TCGA-86-8073-01 19 51629054 51629054 G T SIGLEC9 Missense_Mutation p.G208C 0.15 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 19 51961326 51961326 C A SIGLEC8 Missense_Mutation p.D106Y 0.25 deleterious(0) probably_damaging(0.946) TCGA-86-8073-01 19 52619123 52619123 T C ZNF616 Missense_Mutation p.T432A 0.14 deleterious(0.04) possibly_damaging(0.672) TCGA-86-8073-01 19 53008024 53008024 G T ZNF578 Silent p.L60L 0.21 TCGA-86-8073-01 19 53086529 53086529 G C ZNF701 Missense_Mutation p.G472A 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-86-8073-01 19 53856090 53856090 G T ZNF845 Missense_Mutation p.C721F 0.09 deleterious(0) probably_damaging(0.992) TCGA-86-8073-01 19 53952814 53952814 G - ZNF761 RNA 0.12 TCGA-86-8073-01 19 53959649 53959649 G A ZNF761 RNA 0.14 TCGA-86-8073-01 19 53995063 53995063 A T ZNF813 Missense_Mutation p.N526I 0.20 deleterious(0.02) possibly_damaging(0.803) TCGA-86-8073-01 19 54140236 54140236 G A DPRX Silent p.E190E 0.07 TCGA-86-8073-01 19 54244587 54244587 C T MIR517C RNA 0.38 TCGA-86-8073-01 19 55086463 55086463 G T LILRA2 Missense_Mutation p.W206C 0.44 tolerated(0.1) probably_damaging(1) TCGA-86-8073-01 19 55098702 55098702 G A LILRA2 Silent p.V447V 0.08 TCGA-86-8073-01 19 55098703 55098703 G T LILRA2 Nonsense_Mutation p.E448* 0.08 TCGA-86-8073-01 19 55147028 55147028 C A LILRB1 Missense_Mutation p.Q541K 0.12 tolerated(0.09) benign(0.176) TCGA-86-8073-01 19 55147143 55147143 C A LILRB1 Intron 0.43 TCGA-86-8073-01 19 56363455 56363455 C A NLRP4 Silent p.A3A 0.23 TCGA-86-8073-01 19 56443534 56443534 G T NLRP13 Silent p.P48P 0.10 TCGA-86-8073-01 19 56466375 56466375 C T NLRP8 Silent p.S317S 0.04 TCGA-86-8073-01 19 57327145 57327145 G T PEG3 Missense_Mutation p.R889S 0.30 tolerated(0.7) benign(0.003) TCGA-86-8073-01 19 58101927 58101927 G T ZIK1 Missense_Mutation p.G250C 0.14 tolerated(0.19) probably_damaging(0.96) TCGA-86-8073-01 19 5843706 5843706 C A FUT3 3'UTR 0.19 TCGA-86-8073-01 19 6921773 6921773 T G EMR1 Missense_Mutation p.V557G 0.14 tolerated(0.19) benign(0.021) TCGA-86-8073-01 19 7535098 7535098 C A ARHGEF18 Missense_Mutation p.P1146T 0.32 tolerated_low_confidence(0.12) benign(0.227) TCGA-86-8073-01 19 8997533 8997533 G C MUC16 Missense_Mutation p.A13630G 0.17 probably_damaging(0.988) TCGA-86-8073-01 19 9075358 9075358 T C MUC16 Missense_Mutation p.T4030A 0.27 unknown(0) TCGA-86-8073-01 19 9077021 9077021 G T MUC16 Silent p.T3475T 0.26 TCGA-86-8073-01 19 9087990 9087990 A T MUC16 Silent p.P1275P 0.24 TCGA-86-8073-01 19 9091425 9091425 C T MUC16 Silent p.R130R 0.26 TCGA-86-8073-01 1 10238837 10238837 G T UBE4B Missense_Mutation p.A1221S 0.07 tolerated(0.81) benign(0.014) TCGA-86-8073-01 1 110170757 110170757 G T AMPD2 Missense_Mutation p.R432L 0.25 deleterious(0) probably_damaging(0.997) TCGA-86-8073-01 1 110200478 110200478 G A GSTM4 Missense_Mutation p.C115Y 0.27 deleterious(0) probably_damaging(0.977) TCGA-86-8073-01 1 110594469 110594469 G C STRIP1 Missense_Mutation p.K742N 0.14 deleterious(0.05) benign(0.081) TCGA-86-8073-01 1 111216475 111216475 G A KCNA3 Silent p.S319S 0.19 TCGA-86-8073-01 1 111217273 111217273 C A KCNA3 Missense_Mutation p.M53I 0.09 tolerated_low_confidence(0.44) unknown(0) TCGA-86-8073-01 1 112305608 112305608 A G DDX20 Missense_Mutation p.I431V 0.25 tolerated(0.18) benign(0.004) TCGA-86-8073-01 1 112525064 112525064 G T KCND3 Silent p.L95L 0.13 TCGA-86-8073-01 1 112998657 112998657 G A CTTNBP2NL Missense_Mutation p.M181I 0.20 tolerated(0.11) benign(0.058) TCGA-86-8073-01 1 114248517 114248517 T C PHTF1 Missense_Mutation p.K556E 0.25 deleterious(0) possibly_damaging(0.643) TCGA-86-8073-01 1 114308767 114308767 T A RSBN1 Silent p.T748T 0.21 TCGA-86-8073-01 1 114401667 114401667 G T PTPN22 Missense_Mutation p.T77N 0.22 deleterious(0) possibly_damaging(0.824) TCGA-86-8073-01 1 114483044 114483044 G T HIPK1 Silent p.V13V 0.11 TCGA-86-8073-01 1 115143446 115143446 C T DENND2C Missense_Mutation p.D651N 0.16 tolerated(1) benign(0.162) TCGA-86-8073-01 1 115256579 115256579 C T NRAS Silent p.V44V 0.16 TCGA-86-8073-01 1 11860346 11860346 C T MTHFR Missense_Mutation p.G170E 0.19 tolerated(0.26) benign(0.008) TCGA-86-8073-01 1 119923315 119923315 G C HAO2 Intron 0.15 TCGA-86-8073-01 1 12183826 12183826 C A TNFRSF8 Silent p.P365P 0.17 TCGA-86-8073-01 1 12836002 12836002 C A PRAMEF12 Missense_Mutation p.L202I 0.10 deleterious(0) probably_damaging(0.953) TCGA-86-8073-01 1 12887604 12887604 A T PRAMEF11 Missense_Mutation p.F85I 0.15 tolerated(0.39) benign(0.167) TCGA-86-8073-01 1 12919109 12919109 T C PRAMEF2 Missense_Mutation p.L82P 0.09 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 1 12979815 12979815 C A PRAMEF7 Missense_Mutation p.P336H 0.09 possibly_damaging(0.841) TCGA-86-8073-01 1 147381356 147381356 G A GJA8 Missense_Mutation p.R425Q 0.15 deleterious(0) unknown(0) TCGA-86-8073-01 1 150727501 150727501 C A CTSS Silent p.G125G 0.24 TCGA-86-8073-01 1 150795745 150795745 C T ARNT Missense_Mutation p.R440K 0.19 deleterious(0.03) probably_damaging(0.996) TCGA-86-8073-01 1 151773385 151773385 T A LINGO4 3'UTR 0.10 TCGA-86-8073-01 1 152059246 152059246 A T TCHHL1 Silent p.A304A 0.22 TCGA-86-8073-01 1 152081321 152081321 C T TCHH Missense_Mutation p.E1458K 0.16 unknown(0) TCGA-86-8073-01 1 152081544 152081544 C A TCHH Silent p.L1383L 0.13 TCGA-86-8073-01 1 152188534 152188534 G T HRNR Missense_Mutation p.S1857R 0.02 unknown(0) TCGA-86-8073-01 1 152275998 152275998 G T FLG Missense_Mutation p.H3788Q 0.18 unknown(0) TCGA-86-8073-01 1 152276229 152276229 G T FLG Silent p.L3711L 0.04 TCGA-86-8073-01 1 152280816 152280816 C G FLG Silent p.G2182G 0.15 TCGA-86-8073-01 1 152284033 152284033 C A FLG Missense_Mutation p.R1110M 0.06 possibly_damaging(0.507) TCGA-86-8073-01 1 152285526 152285526 C T FLG Silent p.R612R 0.15 TCGA-86-8073-01 1 152323232 152323232 A T FLG2 Missense_Mutation p.W2344R 0.07 possibly_damaging(0.608) TCGA-86-8073-01 1 152327850 152327850 G T FLG2 Silent p.S804S 0.16 TCGA-86-8073-01 1 152484300 152484300 G T LCE5A Missense_Mutation p.G97V 0.13 deleterious_low_confidence(0) unknown(0) TCGA-86-8073-01 1 152777833 152777833 G T LCE1C Missense_Mutation p.S41Y 0.08 deleterious_low_confidence(0) unknown(0) TCGA-86-8073-01 1 153303333 153303333 C A PGLYRP4 Silent p.L344L 0.06 TCGA-86-8073-01 1 153312877 153312877 C A PGLYRP4 Missense_Mutation p.K268N 0.15 tolerated(0.9) benign(0.005) TCGA-86-8073-01 1 153614810 153614810 G T CHTOP Missense_Mutation p.R103L 0.17 tolerated(0.19) unknown(0) TCGA-86-8073-01 1 154296867 154296867 G T AQP10 Nonsense_Mutation p.E273* 0.17 TCGA-86-8073-01 1 155264066 155264066 C G PKLR Missense_Mutation p.R359P 0.18 deleterious(0) probably_damaging(1) TCGA-86-8073-01 1 155451509 155451509 G C ASH1L Silent p.A384A 0.24 TCGA-86-8073-01 1 155631127 155631127 C A YY1AP1 Nonsense_Mutation p.E461* 0.17 TCGA-86-8073-01 1 1563986 1563986 G C MIB2 Missense_Mutation p.A811P 0.16 deleterious(0.02) probably_damaging(0.952) TCGA-86-8073-01 1 156496248 156496248 G A IQGAP3 3'UTR 0.14 TCGA-86-8073-01 1 156616666 156616666 C A BCAN Silent p.I55I 0.13 TCGA-86-8073-01 1 156616667 156616667 C A BCAN Missense_Mutation p.P56T 0.10 deleterious(0) probably_damaging(0.981) TCGA-86-8073-01 1 156628383 156628383 G T BCAN Missense_Mutation p.R829L 0.16 deleterious(0.01) possibly_damaging(0.458) TCGA-86-8073-01 1 157660307 157660307 G C FCRL3 Silent p.P476P 0.17 TCGA-86-8073-01 1 157667057 157667057 C A FCRL3 Missense_Mutation p.W239C 0.20 tolerated(0.17) possibly_damaging(0.766) TCGA-86-8073-01 1 158152898 158152898 C A CD1D Silent p.R280R 0.07 TCGA-86-8073-01 1 158747077 158747077 C A OR6N2 Missense_Mutation p.A117S 0.12 deleterious(0.02) possibly_damaging(0.486) TCGA-86-8073-01 1 160106377 160106377 G T ATP1A2 Missense_Mutation p.G861C 0.15 deleterious(0.01) possibly_damaging(0.742) TCGA-86-8073-01 1 160171043 160171043 C A CASQ1 Missense_Mutation p.S356R 0.16 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 1 160616702 160616702 C G SLAMF1 Missense_Mutation p.V12L 0.14 tolerated(1) benign(0.001) TCGA-86-8073-01 1 161165308 161165308 G C ADAMTS4 Missense_Mutation p.P403R 0.24 deleterious(0) probably_damaging(0.955) TCGA-86-8073-01 1 161165309 161165309 G T ADAMTS4 Missense_Mutation p.P403T 0.24 deleterious(0) possibly_damaging(0.724) TCGA-86-8073-01 1 16378694 16378694 G T CLCNKB Silent p.G470G 0.17 TCGA-86-8073-01 1 165182938 165182938 T C LMX1A Silent p.T203T 0.16 TCGA-86-8073-01 1 165860559 165860559 G T UCK2 Missense_Mutation p.R119L 0.19 tolerated(0.05) probably_damaging(0.998) TCGA-86-8073-01 1 166896403 166896403 G T ILDR2 Silent p.R299R 0.16 TCGA-86-8073-01 1 166904685 166904685 C A ILDR2 Missense_Mutation p.G245W 0.17 deleterious(0) probably_damaging(1) TCGA-86-8073-01 1 166959064 166959064 C A MAEL Missense_Mutation p.Q75K 0.08 tolerated(0.97) benign(0.006) TCGA-86-8073-01 1 167024976 167024976 C T GPA33 Missense_Mutation p.V228I 0.15 tolerated(0.2) benign(0.144) TCGA-86-8073-01 1 167096615 167096615 G T DUSP27 Silent p.P749P 0.23 TCGA-86-8073-01 1 16914249 16914249 A T NBPF1 Silent p.A179A 0.03 TCGA-86-8073-01 1 16918510 16918510 C A NBPF1 Missense_Mutation p.V3L 0.04 deleterious(0.01) benign(0.198) TCGA-86-8073-01 1 169510440 169510440 T C F5 Silent p.P1296P 0.14 TCGA-86-8073-01 1 169510658 169510658 G C F5 Missense_Mutation p.P1224A 0.11 deleterious(0.02) possibly_damaging(0.702) TCGA-86-8073-01 1 171605645 171605645 G C MYOC Missense_Mutation p.P312R 0.19 deleterious(0) probably_damaging(1) TCGA-86-8073-01 1 17332023 17332023 C A ATP13A2 Missense_Mutation p.W45L 0.28 deleterious(0.02) probably_damaging(0.968) TCGA-86-8073-01 1 173502797 173502797 G T SLC9C2 Missense_Mutation p.T705K 0.22 deleterious(0.02) probably_damaging(0.932) TCGA-86-8073-01 1 176132984 176132984 C A RFWD2 Missense_Mutation p.K203N 0.10 deleterious(0.05) benign(0.017) TCGA-86-8073-01 1 176525500 176525500 G T PAPPA2 Missense_Mutation p.L14F 0.09 tolerated_low_confidence(0.08) probably_damaging(0.998) TCGA-86-8073-01 1 176837987 176837987 C A ASTN1 Missense_Mutation p.G1214C 0.17 deleterious(0) probably_damaging(1) TCGA-86-8073-01 1 176903303 176903303 C A ASTN1 Nonsense_Mutation p.E886* 0.17 TCGA-86-8073-01 1 177199194 177199194 A T BRINP2 Missense_Mutation p.D61V 0.13 deleterious(0) possibly_damaging(0.865) TCGA-86-8073-01 1 17735586 17735586 T A RCC2 Nonstop_Mutation p.*523Cext*42 0.16 TCGA-86-8073-01 1 179100556 179100556 C A ABL2 Missense_Mutation p.R94M 0.20 deleterious(0) probably_damaging(0.998) TCGA-86-8073-01 1 179354422 179354422 T C AXDND1 Missense_Mutation p.M264T 0.18 tolerated(1) benign(0) TCGA-86-8073-01 1 179363111 179363111 C G AXDND1 Missense_Mutation p.R313G 0.10 deleterious(0.03) probably_damaging(0.913) TCGA-86-8073-01 1 17950906 17950906 G T ARHGEF10L Missense_Mutation p.V409L 0.14 deleterious(0.01) benign(0.403) TCGA-86-8073-01 1 17966696 17966696 G T ARHGEF10L Splice_Site p.X724_splice 0.13 TCGA-86-8073-01 1 181686415 181686415 C A CACNA1E Missense_Mutation p.P501H 0.15 deleterious(0) possibly_damaging(0.893) TCGA-86-8073-01 1 181686417 181686417 C A CACNA1E Missense_Mutation p.Q502K 0.14 tolerated(0.14) benign(0.039) TCGA-86-8073-01 1 181727944 181727944 C G CACNA1E Missense_Mutation p.I1515M 0.08 tolerated(0.07) possibly_damaging(0.767) TCGA-86-8073-01 1 182026832 182026832 C A ZNF648 Missense_Mutation p.R105I 0.25 deleterious(0) benign(0.289) TCGA-86-8073-01 1 185878577 185878578 - T HMCN1 Frame_Shift_Ins p.K245Efs*15 0.12 TCGA-86-8073-01 1 186057401 186057401 G T HMCN1 Missense_Mutation p.K3190N 0.16 benign(0.444) TCGA-86-8073-01 1 186277304 186277304 C A PRG4 Missense_Mutation p.P818H 0.15 unknown(0) TCGA-86-8073-01 1 186946820 186946820 C G PLA2G4A Missense_Mutation p.C620W 0.18 deleterious(0) probably_damaging(0.998) TCGA-86-8073-01 1 19236939 19236939 T C IFFO2 Missense_Mutation p.M449V 0.15 deleterious(0) probably_damaging(0.949) TCGA-86-8073-01 1 19403330 19403330 C A UBR4 Missense_Mutation p.D5131Y 0.14 probably_damaging(0.999) TCGA-86-8073-01 1 19630838 19630838 C A AKR7A2 Nonsense_Mutation p.E321* 0.12 TCGA-86-8073-01 1 196876060 196876060 A T CFHR4 Missense_Mutation p.D169V 0.12 deleterious(0) possibly_damaging(0.77) TCGA-86-8073-01 1 197115333 197115333 T A ASPM Missense_Mutation p.I79F 0.13 deleterious(0) benign(0.235) TCGA-86-8073-01 1 197407883 197407883 C G CRB1 Intron 0.30 TCGA-86-8073-01 1 200559321 200559321 C A KIF14 Missense_Mutation p.A965S 0.16 deleterious(0) probably_damaging(0.987) TCGA-86-8073-01 1 200978015 200978015 T A KIF21B Missense_Mutation p.Q110L 0.19 tolerated(0.59) benign(0.076) TCGA-86-8073-01 1 201196066 201196066 C A IGFN1 Silent p.R3615R 0.17 TCGA-86-8073-01 1 201355954 201355954 C A LAD1 Missense_Mutation p.V179F 0.29 deleterious(0.04) possibly_damaging(0.751) TCGA-86-8073-01 1 201687683 201687683 G T NAV1 Silent p.T342T 0.21 TCGA-86-8073-01 1 204242841 204242841 T A PLEKHA6 Silent p.T5T 0.20 TCGA-86-8073-01 1 204937377 204937377 C A NFASC Missense_Mutation p.T236N 0.18 tolerated(0.46) benign(0.006) TCGA-86-8073-01 1 204955161 204955161 T G NFASC Intron 0.10 TCGA-86-8073-01 1 205156764 205156764 C A DSTYK Nonsense_Mutation p.E146* 0.06 TCGA-86-8073-01 1 205308841 205308841 G T KLHDC8A Missense_Mutation p.L158I 0.19 deleterious(0.01) possibly_damaging(0.703) TCGA-86-8073-01 1 207640001 207640001 A G CR2 Silent p.L63L 0.14 TCGA-86-8073-01 1 207785362 207785362 A T CR1 Missense_Mutation p.K2184M 0.16 deleterious(0.01) possibly_damaging(0.904) TCGA-86-8073-01 1 208206757 208206757 C A PLXNA2 Silent p.L1654L 0.24 TCGA-86-8073-01 1 208218075 208218075 C A PLXNA2 Missense_Mutation p.G1218W 0.12 deleterious(0) probably_damaging(1) TCGA-86-8073-01 1 20998542 20998542 C A KIF17 Missense_Mutation p.D871Y 0.12 deleterious(0) probably_damaging(1) TCGA-86-8073-01 1 210010304 210010305 - T DIEXF Frame_Shift_Ins p.S271Ffs*60 0.14 TCGA-86-8073-01 1 21014376 21014376 G A KIF17 Silent p.A481A 0.15 TCGA-86-8073-01 1 21031393 21031393 C A KIF17 Splice_Site p.X224_splice 0.18 TCGA-86-8073-01 1 210970969 210970969 G T KCNH1 Missense_Mutation p.T599K 0.20 deleterious(0) probably_damaging(0.98) TCGA-86-8073-01 1 212209166 212209166 G T DTL 5'UTR 0.24 TCGA-86-8073-01 1 212799391 212799391 C T FAM71A Missense_Mutation p.A391V 0.15 tolerated(0.49) benign(0.003) TCGA-86-8073-01 1 213436106 213436106 A G RPS6KC1 Missense_Mutation p.T1013A 0.17 tolerated(0.44) benign(0.012) TCGA-86-8073-01 1 214705825 214705825 C A PTPN14 Intron 0.19 TCGA-86-8073-01 1 214832293 214832293 G T CENPF Silent p.A3021A 0.12 TCGA-86-8073-01 1 215802354 215802354 G T USH2A Silent p.P5107P 0.13 TCGA-86-8073-01 1 215853703 215853703 C A USH2A Missense_Mutation p.A4028S 0.10 possibly_damaging(0.483) TCGA-86-8073-01 1 216363595 216363595 C G USH2A Missense_Mutation p.A1456P 0.34 benign(0.196) TCGA-86-8073-01 1 216424343 216424343 C G USH2A Missense_Mutation p.G690A 0.17 probably_damaging(0.989) TCGA-86-8073-01 1 220356202 220356202 C A RAB3GAP2 Missense_Mutation p.K690N 0.11 tolerated(0.25) benign(0.268) TCGA-86-8073-01 1 220752708 220752708 G A MARK1 Missense_Mutation p.D22N 0.25 tolerated(0.32) benign(0.002) TCGA-86-8073-01 1 222734782 222734782 C A TAF1A Missense_Mutation p.W388C 0.17 tolerated(0.06) possibly_damaging(0.849) TCGA-86-8073-01 1 226109735 226109735 C A PYCR2 Missense_Mutation p.M121I 0.11 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 1 228582791 228582791 C A TRIM11 Missense_Mutation p.R341L 0.12 deleterious(0) probably_damaging(0.996) TCGA-86-8073-01 1 228612581 228612581 C T HIST3H3 3'UTR 0.22 TCGA-86-8073-01 1 22913107 22913107 C A EPHA8 Missense_Mutation p.P320T 0.19 deleterious(0.05) benign(0.012) TCGA-86-8073-01 1 229738322 229738322 C G TAF5L Missense_Mutation p.D198H 0.07 deleterious(0) possibly_damaging(0.838) TCGA-86-8073-01 1 229771832 229771832 C T URB2 Missense_Mutation p.A491V 0.10 deleterious(0.04) benign(0.115) TCGA-86-8073-01 1 229772632 229772632 G C URB2 Missense_Mutation p.D758H 0.18 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 1 231079566 231079566 C G TTC13 Missense_Mutation p.E220Q 0.13 tolerated(0.14) probably_damaging(0.915) TCGA-86-8073-01 1 231351141 231351141 G T TRIM67 Missense_Mutation p.L769F 0.11 deleterious(0) probably_damaging(0.998) TCGA-86-8073-01 1 231351142 231351142 G T TRIM67 Nonsense_Mutation p.E770* 0.11 TCGA-86-8073-01 1 231954095 231954095 A G DISC1 Missense_Mutation p.K605E 0.19 deleterious(0) probably_damaging(0.993) TCGA-86-8073-01 1 2334554 2334554 C T RER1 Silent p.F194F 0.19 TCGA-86-8073-01 1 2334561 2334561 T A RER1 Nonstop_Mutation p.*197Kext*4 0.04 TCGA-86-8073-01 1 233514980 233514980 A T MLK4 Missense_Mutation p.H743L 0.15 tolerated(0.23) benign(0.035) TCGA-86-8073-01 1 235341218 235341218 A G ARID4B Silent p.G1115G 0.06 TCGA-86-8073-01 1 235590528 235590528 C G TBCE Silent p.L178L 0.10 TCGA-86-8073-01 1 235929520 235929520 T A LYST Nonsense_Mutation p.K1994* 0.14 TCGA-86-8073-01 1 237494206 237494206 C A RYR2 Missense_Mutation p.T66N 0.15 possibly_damaging(0.76) TCGA-86-8073-01 1 237947222 237947222 G T RYR2 Silent p.A4070A 0.29 TCGA-86-8073-01 1 240371063 240371063 C A FMN2 Missense_Mutation p.A984E 0.13 unknown(0) TCGA-86-8073-01 1 240371509 240371509 C A FMN2 Missense_Mutation p.P1133T 0.23 unknown(0) TCGA-86-8073-01 1 240371569 240371569 C A FMN2 Missense_Mutation p.P1153T 0.16 unknown(0) TCGA-86-8073-01 1 240371570 240371570 C T FMN2 Missense_Mutation p.P1153L 0.17 unknown(0) TCGA-86-8073-01 1 24121030 24121030 C G LYPLA2 Silent p.V195V 0.12 TCGA-86-8073-01 1 241729874 241729874 C T KMO Silent p.F257F 0.19 TCGA-86-8073-01 1 24435042 24435042 C A MYOM3 Nonsense_Mutation p.E29* 0.22 TCGA-86-8073-01 1 24463757 24463757 C A IL22RA1 Silent p.R73R 0.20 TCGA-86-8073-01 1 24680928 24680928 G A GRHL3 Intron 0.16 TCGA-86-8073-01 1 247068840 247068840 T A AHCTF1 Intron 0.11 TCGA-86-8073-01 1 247267505 247267505 T A ZNF669 5'UTR 0.21 TCGA-86-8073-01 1 247464416 247464416 C G ZNF496 Missense_Mutation p.R390P 0.13 deleterious(0.02) possibly_damaging(0.52) TCGA-86-8073-01 1 247694785 247694785 C A OR2C3 3'UTR 0.17 TCGA-86-8073-01 1 247712406 247712406 C A GCSAML 5'UTR 0.12 TCGA-86-8073-01 1 247921090 247921090 C A OR1C1 Missense_Mutation p.A207S 0.10 tolerated(0.21) benign(0.297) TCGA-86-8073-01 1 248128656 248128656 C A OR2AK2 Missense_Mutation p.S8Y 0.22 tolerated_low_confidence(0.35) benign(0.02) TCGA-86-8073-01 1 248128657 248128657 C A OR2AK2 Silent p.S8S 0.22 TCGA-86-8073-01 1 248263455 248263455 C T OR2L13 Missense_Mutation p.R260W 0.28 deleterious(0.02) benign(0.192) TCGA-86-8073-01 1 248309207 248309207 G T OR2M5 Missense_Mutation p.G253V 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-86-8073-01 1 248436438 248436438 G T OR2T33 Missense_Mutation p.R227S 0.20 tolerated(0.54) benign(0.198) TCGA-86-8073-01 1 248458864 248458864 G T OR2T12 Missense_Mutation p.T6N 0.17 tolerated(0.31) benign(0.003) TCGA-86-8073-01 1 248524880 248524880 C A OR2T4 5'Flank 0.18 TCGA-86-8073-01 1 248525530 248525530 A G OR2T4 Silent p.V216V 0.22 TCGA-86-8073-01 1 248617043 248617043 C T OR2T2 Silent p.I315I 0.21 TCGA-86-8073-01 1 248737382 248737382 A T OR2T34 Missense_Mutation p.I226N 0.17 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 1 248756461 248756461 A G OR2T10 Silent p.C203C 0.13 TCGA-86-8073-01 1 248813414 248813414 T A OR2T27 Missense_Mutation p.T258S 0.19 deleterious(0.03) probably_damaging(0.91) TCGA-86-8073-01 1 248814054 248814054 G C OR2T27 Silent p.V44V 0.11 TCGA-86-8073-01 1 2528053 2528053 C A MMEL1 Missense_Mutation p.A450S 0.13 deleterious(0) probably_damaging(0.997) TCGA-86-8073-01 1 25729150 25729150 C A RHCE Silent p.V141V 0.14 TCGA-86-8073-01 1 26507362 26507362 G T CNKSR1 Missense_Mutation p.D123Y 0.14 deleterious(0.01) benign(0.073) TCGA-86-8073-01 1 32557320 32557320 G C TMEM39B Missense_Mutation p.R212P 0.09 deleterious(0.02) possibly_damaging(0.852) TCGA-86-8073-01 1 32658829 32658829 G T TXLNA Missense_Mutation p.K393N 0.25 deleterious(0) probably_damaging(0.966) TCGA-86-8073-01 1 32745230 32745230 C T LCK Intron 0.17 TCGA-86-8073-01 1 3319530 3319530 G T PRDM16 Missense_Mutation p.K284N 0.09 deleterious(0.01) possibly_damaging(0.821) TCGA-86-8073-01 1 33959145 33959145 G T ZSCAN20 Missense_Mutation p.E601D 0.14 tolerated(0.07) benign(0.345) TCGA-86-8073-01 1 33959146 33959146 G T ZSCAN20 Missense_Mutation p.A602S 0.14 tolerated(0.55) benign(0.08) TCGA-86-8073-01 1 33960937 33960937 A T ZSCAN20 Missense_Mutation p.Q998L 0.17 deleterious(0) possibly_damaging(0.807) TCGA-86-8073-01 1 34038145 34038145 C A CSMD2 Missense_Mutation p.G2577C 0.16 deleterious(0) probably_damaging(1) TCGA-86-8073-01 1 35579841 35579841 A - ZMYM1 Frame_Shift_Del p.I804Yfs*16 0.12 TCGA-86-8073-01 1 37307540 37307540 C A GRIK3 Nonsense_Mutation p.E443* 0.10 TCGA-86-8073-01 1 39876945 39876945 G T KIAA0754 Missense_Mutation p.W200C 0.07 possibly_damaging(0.878) TCGA-86-8073-01 1 40434081 40434081 C T MFSD2A Silent p.F441F 0.07 TCGA-86-8073-01 1 40434350 40434350 C T MFSD2A Missense_Mutation p.L501F 0.15 deleterious(0) probably_damaging(0.936) TCGA-86-8073-01 1 40704228 40704228 G T RLF Missense_Mutation p.R1285I 0.08 deleterious(0.01) benign(0.425) TCGA-86-8073-01 1 42041255 42041255 G T HIVEP3 Missense_Mutation p.Q1723K 0.16 benign(0) TCGA-86-8073-01 1 42048156 42048156 C A HIVEP3 Silent p.T771T 0.11 TCGA-86-8073-01 1 43650889 43650889 T C WDR65 Silent p.H277H 0.16 TCGA-86-8073-01 1 43888878 43888878 G T SZT2 Missense_Mutation p.G716W 0.27 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-86-8073-01 1 43898108 43898108 G T SZT2 Nonsense_Mutation p.E1757* 0.10 TCGA-86-8073-01 1 48694727 48694727 A T SLC5A9 Intron 0.15 TCGA-86-8073-01 1 50659497 50659497 C A ELAVL4 Missense_Mutation p.L156I 0.17 tolerated(0.18) probably_damaging(0.979) TCGA-86-8073-01 1 50661329 50661329 C A ELAVL4 Missense_Mutation p.T219K 0.21 tolerated(0.23) benign(0.005) TCGA-86-8073-01 1 53541643 53541643 G T PODN Missense_Mutation p.R242M 0.36 deleterious(0) probably_damaging(0.993) TCGA-86-8073-01 1 53544241 53544241 G T PODN Silent p.L401L 0.15 TCGA-86-8073-01 1 53580414 53580414 G C SLC1A7 Intron 0.11 TCGA-86-8073-01 1 53927316 53927316 T A DMRTB1 Missense_Mutation p.L250M 0.21 deleterious(0.02) probably_damaging(0.99) TCGA-86-8073-01 1 54238132 54238132 C A NDC1 Missense_Mutation p.A611S 0.14 deleterious(0.01) possibly_damaging(0.908) TCGA-86-8073-01 1 54605349 54605349 G A CDCP2 Silent p.S398S 0.23 TCGA-86-8073-01 1 57480638 57480638 C G DAB1 Missense_Mutation p.Q454H 0.17 deleterious(0) probably_damaging(0.987) TCGA-86-8073-01 1 60132975 60132975 A G FGGY Missense_Mutation p.I463M 0.20 deleterious(0) benign(0.087) TCGA-86-8073-01 1 6209425 6209425 C A CHD5 Missense_Mutation p.V348L 0.10 deleterious(0) probably_damaging(0.968) TCGA-86-8073-01 1 6537604 6537604 C A PLEKHG5 Missense_Mutation p.D89Y 0.20 deleterious(0) probably_damaging(0.998) TCGA-86-8073-01 1 66036203 66036203 C A LEPR Missense_Mutation p.P30T 0.06 deleterious(0) possibly_damaging(0.842) TCGA-86-8073-01 1 68512912 68512912 C G DIRAS3 Silent p.L23L 0.24 TCGA-86-8073-01 1 68910291 68910291 C A RPE65 Missense_Mutation p.G140W 0.22 deleterious(0.01) probably_damaging(1) TCGA-86-8073-01 1 70477512 70477512 G C LRRC7 Missense_Mutation p.C308S 0.10 tolerated(0.41) probably_damaging(0.989) TCGA-86-8073-01 1 70502242 70502242 G T LRRC7 Silent p.R703R 0.22 TCGA-86-8073-01 1 70503936 70503936 C G LRRC7 Missense_Mutation p.S772W 0.19 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-86-8073-01 1 72163766 72163766 C A NEGR1 Missense_Mutation p.A198S 0.29 tolerated(0.61) possibly_damaging(0.714) TCGA-86-8073-01 1 74621484 74621484 C A LRRIQ3 Missense_Mutation p.A214S 0.12 deleterious(0.01) possibly_damaging(0.622) TCGA-86-8073-01 1 74649218 74649218 A T LRRIQ3 Missense_Mutation p.S51T 0.20 deleterious(0.02) benign(0.214) TCGA-86-8073-01 1 75038989 75038989 C T C1orf173 Missense_Mutation p.G802E 0.10 tolerated(0.18) possibly_damaging(0.581) TCGA-86-8073-01 1 77528683 77528683 C A ST6GALNAC5 Missense_Mutation p.P268H 0.13 probably_damaging(0.999) TCGA-86-8073-01 1 79125158 79125158 G T IFI44 Missense_Mutation p.L334F 0.26 deleterious(0.01) possibly_damaging(0.83) TCGA-86-8073-01 1 79392620 79392620 G T ELTD1 Missense_Mutation p.P345H 0.15 tolerated(0.08) possibly_damaging(0.832) TCGA-86-8073-01 1 82408843 82408843 C A LPHN2 Silent p.R196R 0.14 TCGA-86-8073-01 1 86306905 86306905 T A COL24A1 Silent p.P1209P 0.17 TCGA-86-8073-01 1 87031610 87031610 C A CLCA4 Silent p.P287P 0.18 TCGA-86-8073-01 1 89615107 89615107 C A GBP7 Missense_Mutation p.Q340H 0.11 deleterious(0.01) probably_damaging(0.929) TCGA-86-8073-01 1 89654371 89654371 C A GBP4 Missense_Mutation p.S435I 0.15 deleterious(0.01) possibly_damaging(0.883) TCGA-86-8073-01 1 94654402 94654402 T C ARHGAP29 Missense_Mutation p.I558V 0.26 tolerated(0.11) benign(0.009) TCGA-86-8073-01 1 97771841 97771841 C A DPYD Missense_Mutation p.V691L 0.13 tolerated(0.1) probably_damaging(0.968) TCGA-86-8073-01 1 99387446 99387446 C T LPPR5 Missense_Mutation p.V264I 0.16 tolerated(0.1) benign(0.032) TCGA-86-8073-01 1 99771851 99771851 C A LPPR4 Missense_Mutation p.S526Y 0.19 deleterious(0.02) probably_damaging(0.944) TCGA-86-8073-01 20 1162121 1162121 G T TMEM74B Missense_Mutation p.P48T 0.12 tolerated(0.06) benign(0.079) TCGA-86-8073-01 20 1300260 1300260 T C SDCBP2 Missense_Mutation p.Q33R 0.29 tolerated(0.4) benign(0.002) TCGA-86-8073-01 20 13847493 13847493 C A SEL1L2 Missense_Mutation p.G420V 0.11 deleterious(0) probably_damaging(1) TCGA-86-8073-01 20 13847494 13847494 C A SEL1L2 Missense_Mutation p.G420C 0.11 deleterious(0) probably_damaging(1) TCGA-86-8073-01 20 1457903 1457903 C T SIRPB2 Intron 0.28 TCGA-86-8073-01 20 20226852 20226852 G T C20orf26 Missense_Mutation p.A718S 0.15 tolerated(0.85) benign(0.015) TCGA-86-8073-01 20 2290824 2290824 G T TGM3 Missense_Mutation p.G61V 0.25 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 20 23065106 23065106 C G CD93 Missense_Mutation p.G575A 0.06 tolerated(0.09) benign(0.156) TCGA-86-8073-01 20 29896362 29896362 C T DEFB116 Missense_Mutation p.M9I 0.11 tolerated(0.08) benign(0.01) TCGA-86-8073-01 20 29993974 29993974 G A DEFB121 5'UTR 0.37 TCGA-86-8073-01 20 30507693 30507693 C T TTLL9 Silent p.I177I 0.19 TCGA-86-8073-01 20 30584860 30584860 G T XKR7 Missense_Mutation p.G447V 0.14 deleterious(0.01) possibly_damaging(0.901) TCGA-86-8073-01 20 30672333 30672333 G T HCK Silent p.G274G 0.21 TCGA-86-8073-01 20 3211598 3211598 C T SLC4A11 Silent p.E426E 0.21 TCGA-86-8073-01 20 35060922 35060922 C A DLGAP4 Missense_Mutation p.P268T 0.37 tolerated(1) possibly_damaging(0.766) TCGA-86-8073-01 20 35125141 35125141 C T DLGAP4 Missense_Mutation p.P561L 0.22 deleterious(0.02) probably_damaging(1) TCGA-86-8073-01 20 3654743 3654743 G T ADAM33 Missense_Mutation p.R236S 0.11 deleterious(0) probably_damaging(1) TCGA-86-8073-01 20 36869962 36869962 G T KIAA1755 Missense_Mutation p.P191T 0.11 deleterious(0) benign(0.137) TCGA-86-8073-01 20 40770635 40770635 G T PTPRT Missense_Mutation p.P897Q 0.23 tolerated(0.14) benign(0.131) TCGA-86-8073-01 20 43753035 43753035 C A WFDC12 Silent p.L18L 0.17 TCGA-86-8073-01 20 44640211 44640211 A T MMP9 Splice_Site p.X275_splice 0.06 TCGA-86-8073-01 20 44678415 44678415 C T SLC12A5 Nonsense_Mutation p.Q746* 0.12 TCGA-86-8073-01 20 44691186 44691186 C A NCOA5 Missense_Mutation p.G498V 0.19 tolerated(0.12) probably_damaging(0.934) TCGA-86-8073-01 20 44986370 44986370 C G SLC35C2 Missense_Mutation p.V55L 0.17 tolerated(0.33) benign(0.002) TCGA-86-8073-01 20 45194997 45194997 C T SLC13A3 Silent p.Q455Q 0.21 TCGA-86-8073-01 20 45797804 45797804 C A EYA2 Missense_Mutation p.H332Q 0.18 deleterious(0) probably_damaging(0.998) TCGA-86-8073-01 20 47258775 47258775 G T PREX1 Missense_Mutation p.L1236I 0.17 deleterious(0.01) benign(0.371) TCGA-86-8073-01 20 47324815 47324815 G A PREX1 Missense_Mutation p.H256Y 0.17 deleterious(0.01) possibly_damaging(0.904) TCGA-86-8073-01 20 47606137 47606137 G T ARFGEF2 Missense_Mutation p.Q910H 0.23 deleterious(0) probably_damaging(0.984) TCGA-86-8073-01 20 47990291 47990291 G T KCNB1 Silent p.T602T 0.08 TCGA-86-8073-01 20 47990541 47990541 G C KCNB1 Missense_Mutation p.S519C 0.05 deleterious_low_confidence(0.02) benign(0.048) TCGA-86-8073-01 20 49218749 49218749 C A FAM65C Missense_Mutation p.G503W 0.25 deleterious(0.01) possibly_damaging(0.848) TCGA-86-8073-01 20 49458367 49458367 G T BCAS4 Missense_Mutation p.R140L 0.16 deleterious(0.03) probably_damaging(0.985) TCGA-86-8073-01 20 50226671 50226671 C A ATP9A Missense_Mutation p.V869F 0.25 deleterious(0) benign(0.376) TCGA-86-8073-01 20 50346370 50346370 T C ATP9A Intron 0.23 TCGA-86-8073-01 20 5294673 5294673 C T PROKR2 Missense_Mutation p.V115M 0.15 deleterious(0) probably_damaging(0.97) TCGA-86-8073-01 20 54573644 54573644 G T CBLN4 Missense_Mutation p.T192K 0.11 deleterious(0) possibly_damaging(0.68) TCGA-86-8073-01 20 54823852 54823852 C A MC3R 5'UTR 0.18 TCGA-86-8073-01 20 56083792 56083792 G A CTCFL Missense_Mutation p.T515I 0.13 tolerated(0.12) benign(0.091) TCGA-86-8073-01 20 56726071 56726071 G A C20orf85 Silent p.V17V 0.21 TCGA-86-8073-01 20 57429151 57429151 C A GNAS Silent p.V277V 0.10 TCGA-86-8073-01 20 57768946 57768946 T A ZNF831 Missense_Mutation p.W958R 0.19 tolerated(0.7) benign(0) TCGA-86-8073-01 20 57769482 57769482 C A ZNF831 Silent p.A1136A 0.11 TCGA-86-8073-01 20 57829094 57829094 G T ZNF831 Missense_Mutation p.G1444W 0.15 deleterious(0) probably_damaging(0.994) TCGA-86-8073-01 20 60738588 60738588 C T SS18L1 Nonsense_Mutation p.Q211* 0.31 TCGA-86-8073-01 20 61303326 61303326 C T SLCO4A1 3'UTR 0.19 TCGA-86-8073-01 20 61453109 61453109 G A COL9A3 Missense_Mutation p.G124R 0.12 deleterious(0) unknown(0) TCGA-86-8073-01 20 61458592 61458592 G C COL9A3 Splice_Site p.X265_splice 0.10 TCGA-86-8073-01 20 61873930 61873930 T G NKAIN4 Missense_Mutation p.N193T 0.05 tolerated(0.14) possibly_damaging(0.575) TCGA-86-8073-01 20 61939336 61939336 C - COL20A1 Frame_Shift_Del p.Y223* 0.10 TCGA-86-8073-01 20 62120437 62120437 G T EEF1A2 Silent p.A366A 0.22 TCGA-86-8073-01 20 62337733 62337733 T A ARFRP1 Missense_Mutation p.E80D 0.14 tolerated(0.15) benign(0.021) TCGA-86-8073-01 20 62364705 62364705 G T ZGPAT Splice_Site p.X240_splice 0.19 TCGA-86-8073-01 20 62724238 62724238 G T OPRL1 Silent p.V55V 0.12 TCGA-86-8073-01 20 896758 896758 C G ANGPT4 Missense_Mutation p.E34Q 0.13 tolerated(0.41) benign(0.006) TCGA-86-8073-01 20 9525048 9525048 C A PAK7 Nonsense_Mutation p.E613* 0.17 TCGA-86-8073-01 21 10908884 10908884 T A TPTE Silent p.T487T 0.09 TCGA-86-8073-01 21 15535754 15535754 G C LIPI Missense_Mutation p.T352R 0.11 tolerated(0.23) benign(0.006) TCGA-86-8073-01 21 18924097 18924097 G T CXADR Missense_Mutation p.D81Y 0.10 deleterious(0) possibly_damaging(0.838) TCGA-86-8073-01 21 19698807 19698807 C T TMPRSS15 Silent p.V621V 0.06 TCGA-86-8073-01 21 27484348 27484348 C A APP Missense_Mutation p.G58V 0.23 deleterious(0) unknown(0) TCGA-86-8073-01 21 28307026 28307026 G T ADAMTS5 Missense_Mutation p.P483H 0.12 deleterious(0) possibly_damaging(0.754) TCGA-86-8073-01 21 28315751 28315751 G T ADAMTS5 Silent p.P451P 0.10 TCGA-86-8073-01 21 28315752 28315752 G T ADAMTS5 Missense_Mutation p.P451H 0.10 deleterious(0) probably_damaging(1) TCGA-86-8073-01 21 32585770 32585770 C T TIAM1 Missense_Mutation p.E721K 0.14 tolerated(0.1) benign(0.018) TCGA-86-8073-01 21 33684058 33684058 C A MRAP Silent p.I90I 0.14 TCGA-86-8073-01 21 35254609 35254609 G C ITSN1 Missense_Mutation p.K1468N 0.15 tolerated(0.07) possibly_damaging(0.747) TCGA-86-8073-01 21 37444820 37444820 C T CBR1 Silent p.F158F 0.15 TCGA-86-8073-01 21 38308890 38308890 C A HLCS Missense_Mutation p.L285F 0.22 deleterious(0.03) benign(0.172) TCGA-86-8073-01 21 39086838 39086838 G T KCNJ6 Missense_Mutation p.H208N 0.08 tolerated(1) benign(0.003) TCGA-86-8073-01 21 43221631 43221631 G A PRDM15 Silent p.P1431P 0.16 TCGA-86-8073-01 21 45540641 45540641 G A PWP2 Silent p.Q489Q 0.08 TCGA-86-8073-01 21 45542228 45542228 G T PWP2 Missense_Mutation p.A603S 0.10 tolerated(0.65) benign(0.135) TCGA-86-8073-01 21 45953684 45953684 C A TSPEAR Missense_Mutation p.Q142H 0.30 deleterious(0.01) possibly_damaging(0.73) TCGA-86-8073-01 21 45959828 45959828 G A KRTAP10-1 Missense_Mutation p.S69L 0.18 deleterious(0.04) unknown(0) TCGA-86-8073-01 21 45999857 45999857 C A KRTAP10-5 Missense_Mutation p.C200F 0.13 deleterious(0) probably_damaging(1) TCGA-86-8073-01 21 46276116 46276116 C A PTTG1IP Missense_Mutation p.Q147H 0.18 deleterious(0.03) probably_damaging(0.974) TCGA-86-8073-01 21 46642076 46642076 G T ADARB1 Missense_Mutation p.K730N 0.16 deleterious(0) probably_damaging(0.996) TCGA-86-8073-01 21 47697624 47697624 C A MCM3AP Missense_Mutation p.V559L 0.22 tolerated(0.08) possibly_damaging(0.696) TCGA-86-8073-01 22 17073417 17073417 G T CCT8L2 Silent p.A8A 0.20 TCGA-86-8073-01 22 17073441 17073441 G T CCT8L2 5'UTR 0.18 TCGA-86-8073-01 22 18769205 18769205 C A GGT3P RNA 0.08 TCGA-86-8073-01 22 18918533 18918533 C A PRODH Missense_Mutation p.S151I 0.12 deleterious(0) possibly_damaging(0.747) TCGA-86-8073-01 22 20074813 20074813 G A DGCR8 Silent p.P283P 0.10 TCGA-86-8073-01 22 22453567 22453567 C A IGLV8-61 Missense_Mutation p.Q105K 0.20 deleterious(0.02) possibly_damaging(0.711) TCGA-86-8073-01 22 22869972 22869972 C T ZNF280A 5'UTR 0.18 TCGA-86-8073-01 22 22892170 22892170 C A PRAME Missense_Mutation p.G311C 0.28 deleterious(0) probably_damaging(0.996) TCGA-86-8073-01 22 23237658 23237658 G T IGLL5 Silent p.P143P 0.21 TCGA-86-8073-01 22 24898153 24898153 C T UPB1 Silent p.V112V 0.18 TCGA-86-8073-01 22 25151807 25151807 T C PIWIL3 Silent p.K212K 0.22 TCGA-86-8073-01 22 26688446 26688446 C A SEZ6L Missense_Mutation p.P57T 0.21 tolerated_low_confidence(0.71) benign(0.001) TCGA-86-8073-01 22 26849256 26849256 G A HPS4 Silent p.F690F 0.15 TCGA-86-8073-01 22 30984106 30984106 C A PES1 Missense_Mutation p.V54F 0.14 deleterious(0) probably_damaging(0.986) TCGA-86-8073-01 22 31524557 31524557 C A INPP5J Missense_Mutation p.Q336K 0.18 tolerated(0.7) benign(0.003) TCGA-86-8073-01 22 32058140 32058140 A T PISD Missense_Mutation p.W19R 0.04 tolerated_low_confidence(0.6) benign(0.028) TCGA-86-8073-01 22 32097651 32097651 C A PRR14L Missense_Mutation p.R2033L 0.08 deleterious(0) possibly_damaging(0.738) TCGA-86-8073-01 22 32795632 32795632 G A RTCB Silent p.P204P 0.10 TCGA-86-8073-01 22 33265021 33265021 G T SYN3 Missense_Mutation p.Q185K 0.20 tolerated(0.21) unknown(0) TCGA-86-8073-01 22 33733703 33733703 C A LARGE Nonsense_Mutation p.E406* 0.26 TCGA-86-8073-01 22 36629240 36629240 C - APOL2 5'UTR 0.18 TCGA-86-8073-01 22 36653416 36653416 G - APOL1 Frame_Shift_Del p.K66Nfs*30 0.16 TCGA-86-8073-01 22 36900577 36900577 T C FOXRED2 Missense_Mutation p.Y255C 0.17 deleterious(0) probably_damaging(1) TCGA-86-8073-01 22 37098477 37098477 C T CACNG2 Missense_Mutation p.E49K 0.16 tolerated(0.07) benign(0.19) TCGA-86-8073-01 22 37906348 37906348 C A CARD10 Silent p.G260G 0.29 TCGA-86-8073-01 22 38131136 38131136 C T TRIOBP Missense_Mutation p.P1598L 0.15 deleterious_low_confidence(0) possibly_damaging(0.738) TCGA-86-8073-01 22 39224316 39224316 C T NPTXR Missense_Mutation p.G276S 0.25 tolerated(0.31) benign(0.023) TCGA-86-8073-01 22 40036944 40036944 G T CACNA1I Silent p.L271L 0.28 TCGA-86-8073-01 22 40055082 40055082 C A CACNA1I Missense_Mutation p.T764N 0.24 tolerated(0.05) possibly_damaging(0.728) TCGA-86-8073-01 22 40068267 40068267 G A CACNA1I Missense_Mutation p.V1535M 0.26 tolerated(0.1) possibly_damaging(0.86) TCGA-86-8073-01 22 40415243 40415243 G T FAM83F Missense_Mutation p.K187N 0.08 deleterious(0) probably_damaging(0.998) TCGA-86-8073-01 22 41305186 41305186 G C XPNPEP3 Missense_Mutation p.G306R 0.09 deleterious(0) probably_damaging(0.974) TCGA-86-8073-01 22 41735042 41735043 CC TCT ZC3H7B Frame_Shift_Ins p.P222Lfs*33 0.11 TCGA-86-8073-01 22 42042919 42042919 A G XRCC6 Missense_Mutation p.K265E 0.24 tolerated(1) benign(0.002) TCGA-86-8073-01 22 42321454 42321454 C A TNFRSF13C Missense_Mutation p.G158C 0.26 tolerated(0.08) possibly_damaging(0.707) TCGA-86-8073-01 22 46655556 46655556 G A PKDREJ Missense_Mutation p.P1222S 0.06 tolerated(0.11) probably_damaging(0.913) TCGA-86-8073-01 22 46795729 46795729 C A CELSR1 Missense_Mutation p.G1766V 0.27 deleterious(0.05) benign(0.348) TCGA-86-8073-01 2 103057814 103057814 A C IL18RAP Missense_Mutation p.E258A 0.18 tolerated(0.63) benign(0.063) TCGA-86-8073-01 2 109398747 109398747 G C RANBP2 Missense_Mutation p.R2975T 0.10 deleterious(0) probably_damaging(1) TCGA-86-8073-01 2 109527497 109527497 G A EDAR Silent p.A187A 0.07 TCGA-86-8073-01 2 109545728 109545728 C T EDAR Silent p.E94E 0.16 TCGA-86-8073-01 2 113736271 113736271 G A IL36G Splice_Site p.X19_splice 0.12 TCGA-86-8073-01 2 113943728 113943728 A G PSD4 Silent p.A508A 0.11 TCGA-86-8073-01 2 120438836 120438836 G T TMEM177 Missense_Mutation p.G136V 0.18 deleterious(0) probably_damaging(1) TCGA-86-8073-01 2 121555001 121555001 G C GLI2 Missense_Mutation p.L35F 0.14 deleterious_low_confidence(0.04) probably_damaging(0.994) TCGA-86-8073-01 2 124999890 124999890 G A CNTNAP5 Missense_Mutation p.D101N 0.23 tolerated(0.16) probably_damaging(0.991) TCGA-86-8073-01 2 125547511 125547511 G T CNTNAP5 Nonsense_Mutation p.G928* 0.22 TCGA-86-8073-01 2 125547512 125547512 G T CNTNAP5 Missense_Mutation p.G928V 0.22 deleterious(0.02) probably_damaging(0.997) TCGA-86-8073-01 2 127807994 127807994 C A BIN1 Intron 0.16 TCGA-86-8073-01 2 128412415 128412415 C A LIMS2 Missense_Mutation p.C100F 0.09 deleterious(0) possibly_damaging(0.898) TCGA-86-8073-01 2 128412416 128412416 A G LIMS2 Missense_Mutation p.C100R 0.09 deleterious(0) possibly_damaging(0.597) TCGA-86-8073-01 2 128628923 128628923 C A AMMECR1L Missense_Mutation p.V140L 0.25 deleterious(0) probably_damaging(0.998) TCGA-86-8073-01 2 131521065 131521065 C T AMER3 Missense_Mutation p.P474S 0.38 deleterious(0.01) probably_damaging(0.965) TCGA-86-8073-01 2 132021940 132021940 C A POTEE Missense_Mutation p.S971Y 0.14 deleterious_low_confidence(0.04) probably_damaging(0.987) TCGA-86-8073-01 2 133542560 133542560 G T NCKAP5 Silent p.A608A 0.07 TCGA-86-8073-01 2 139428798 139428798 G T NXPH2 Silent p.P163P 0.14 TCGA-86-8073-01 2 1440133 1440133 C A TPO Silent p.P153P 0.13 TCGA-86-8073-01 2 145161657 145161657 C A ZEB2 Silent p.L211L 0.10 TCGA-86-8073-01 2 152470990 152470990 C G NEB Missense_Mutation p.D3801H 0.14 probably_damaging(0.983) TCGA-86-8073-01 2 152529000 152529000 C A NEB Missense_Mutation p.K1394N 0.07 probably_damaging(0.954) TCGA-86-8073-01 2 154335053 154335053 C T RPRM Silent p.T9T 0.22 TCGA-86-8073-01 2 15651344 15651344 C A NBAS Missense_Mutation p.V293F 0.11 deleterious(0.01) benign(0.319) TCGA-86-8073-01 2 15651345 15651345 C A NBAS Silent p.G292G 0.10 TCGA-86-8073-01 2 160193566 160193566 C T BAZ2B Missense_Mutation p.G1895R 0.13 probably_damaging(0.977) TCGA-86-8073-01 2 160287626 160287626 C T BAZ2B Missense_Mutation p.E648K 0.19 benign(0.292) TCGA-86-8073-01 2 162875237 162875237 A T DPP4 Splice_Site p.X474_splice 0.19 TCGA-86-8073-01 2 163099836 163099837 - T FAP Frame_Shift_Ins p.M1? 0.09 TCGA-86-8073-01 2 163694975 163694975 G A KCNH7 Silent p.I18I 0.18 TCGA-86-8073-01 2 164467887 164467887 G A FIGN Missense_Mutation p.P152L 0.05 deleterious(0) benign(0.334) TCGA-86-8073-01 2 1652675 1652675 G A PXDN Silent p.C959C 0.23 TCGA-86-8073-01 2 168105160 168105160 C T XIRP2 Missense_Mutation p.P2420S 0.06 possibly_damaging(0.895) TCGA-86-8073-01 2 168108201 168108201 G T XIRP2 Missense_Mutation p.K3433N 0.09 benign(0.394) TCGA-86-8073-01 2 168114816 168114816 C G XIRP2 3'UTR 0.13 TCGA-86-8073-01 2 168114827 168114827 G T XIRP2 3'UTR 0.18 TCGA-86-8073-01 2 170597930 170597930 G T KLHL23 Missense_Mutation p.V417F 0.15 tolerated(0.22) benign(0.185) TCGA-86-8073-01 2 171240282 171240282 A T MYO3B Silent p.A416A 0.09 TCGA-86-8073-01 2 176947171 176947171 G T EVX2 Missense_Mutation p.A145E 0.25 tolerated(0.18) benign(0.034) TCGA-86-8073-01 2 176973778 176973778 C A HOXD11 Missense_Mutation p.Q309K 0.08 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 2 17699607 17699607 G T RAD51AP2 Missense_Mutation p.P26T 0.21 tolerated(0.1) benign(0.241) TCGA-86-8073-01 2 177016754 177016754 C A HOXD4 Silent p.A131A 0.16 TCGA-86-8073-01 2 178565872 178565872 C A PDE11A Missense_Mutation p.A741S 0.19 tolerated(0.06) possibly_damaging(0.821) TCGA-86-8073-01 2 179579035 179579035 G - TTN Frame_Shift_Del p.T8823Rfs*11 0.10 TCGA-86-8073-01 2 179592996 179592996 T C TTN Missense_Mutation p.K6519E 0.07 TCGA-86-8073-01 2 179596810 179596810 C A TTN Missense_Mutation p.S5629I 0.14 TCGA-86-8073-01 2 179647701 179647701 T A TTN Missense_Mutation p.R978W 0.11 TCGA-86-8073-01 2 180008479 180008479 C A SESTD1 Missense_Mutation p.G230V 0.14 tolerated(0.16) benign(0.163) TCGA-86-8073-01 2 183731175 183731175 C A FRZB Nonsense_Mutation p.E36* 0.12 TCGA-86-8073-01 2 183943646 183943646 A G DUSP19 5'UTR 0.22 TCGA-86-8073-01 2 185802005 185802005 G T ZNF804A Nonsense_Mutation p.E628* 0.10 TCGA-86-8073-01 2 187506124 187506124 T C ITGAV Missense_Mutation p.V323A 0.22 deleterious(0) possibly_damaging(0.631) TCGA-86-8073-01 2 189856909 189856909 G T COL3A1 Splice_Site p.X318_splice 0.08 TCGA-86-8073-01 2 189856910 189856910 G T COL3A1 Missense_Mutation p.G318C 0.08 unknown(0) TCGA-86-8073-01 2 189898884 189898884 C A COL5A2 Missense_Mutation p.R1471L 0.07 unknown(0) TCGA-86-8073-01 2 189904155 189904155 C A COL5A2 Silent p.A1256A 0.17 TCGA-86-8073-01 2 190682877 190682877 G A PMS1 Missense_Mutation p.D185N 0.20 tolerated(0.08) benign(0.009) TCGA-86-8073-01 2 191235815 191235815 G T INPP1 Missense_Mutation p.C296F 0.14 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 2 1926887 1926887 C G MYT1L Silent p.R218R 0.17 TCGA-86-8073-01 2 198436841 198436841 G T RFTN2 Missense_Mutation p.A466E 0.19 deleterious(0.01) benign(0.206) TCGA-86-8073-01 2 198949413 198949413 C G PLCL1 Missense_Mutation p.P391R 0.11 tolerated(0.09) possibly_damaging(0.737) TCGA-86-8073-01 2 202337697 202337697 G C STRADB Missense_Mutation p.L71F 0.10 deleterious(0.01) probably_damaging(0.988) TCGA-86-8073-01 2 206418047 206418047 G T PARD3B Splice_Site p.X999_splice 0.22 TCGA-86-8073-01 2 206562279 206562279 G A NRP2 Missense_Mutation p.G29R 0.12 deleterious(0) probably_damaging(0.997) TCGA-86-8073-01 2 206562391 206562391 A T NRP2 Missense_Mutation p.Q66L 0.15 deleterious(0.05) probably_damaging(0.998) TCGA-86-8073-01 2 207041372 207041372 C A GPR1 Missense_Mutation p.L200F 0.13 tolerated(0.66) benign(0.038) TCGA-86-8073-01 2 207408023 207408023 G A ADAM23 Missense_Mutation p.E235K 0.11 tolerated(0.18) benign(0.005) TCGA-86-8073-01 2 209185039 209185039 A C PIKFYVE Silent p.R716R 0.17 TCGA-86-8073-01 2 211467008 211467008 C A CPS1 Nonsense_Mutation p.S603* 0.04 TCGA-86-8073-01 2 21229275 21229275 A G APOB Missense_Mutation p.Y3489H 0.06 probably_damaging(0.998) TCGA-86-8073-01 2 21229982 21229982 A G APOB Missense_Mutation p.V3253A 0.23 benign(0.062) TCGA-86-8073-01 2 214727307 214727307 G T SPAG16 Missense_Mutation p.G390V 0.12 deleterious(0) probably_damaging(0.974) TCGA-86-8073-01 2 219029206 219029206 G T CXCR1 Silent p.V243V 0.15 TCGA-86-8073-01 2 219892996 219892996 T C CCDC108 Missense_Mutation p.D593G 0.09 deleterious(0) probably_damaging(0.944) TCGA-86-8073-01 2 224463217 224463217 G T SCG2 Missense_Mutation p.Q262K 0.15 tolerated(0.2) benign(0.23) TCGA-86-8073-01 2 228194473 228194473 A C MFF Silent p.G4G 0.15 TCGA-86-8073-01 2 228881860 228881860 G T SPHKAP Nonsense_Mutation p.S1237* 0.17 TCGA-86-8073-01 2 228884423 228884423 C G SPHKAP Missense_Mutation p.D383H 0.15 tolerated(0.2) benign(0.009) TCGA-86-8073-01 2 230910510 230910510 G T SLC16A14 Silent p.I444I 0.19 TCGA-86-8073-01 2 231090568 231090568 G T SP140 Missense_Mutation p.Q3H 0.18 deleterious_low_confidence(0) unknown(0) TCGA-86-8073-01 2 231177453 231177453 C A SP140 3'UTR 0.19 TCGA-86-8073-01 2 232324988 232324988 C A NCL Silent p.T305T 0.11 TCGA-86-8073-01 2 233243395 233243395 C A ALPP 5'UTR 0.14 TCGA-86-8073-01 2 234590873 234590873 G T UGT1A7 Missense_Mutation p.R97L 0.16 tolerated(0.42) benign(0.001) TCGA-86-8073-01 2 234628319 234628319 A T UGT1A4 Nonsense_Mutation p.K285* 0.13 TCGA-86-8073-01 2 234680959 234680959 G A UGT1A4 Silent p.V453V 0.15 TCGA-86-8073-01 2 234975187 234975187 G T SPP2 Missense_Mutation p.G152V 0.18 deleterious(0.03) possibly_damaging(0.895) TCGA-86-8073-01 2 234975188 234975188 G T SPP2 Silent p.G152G 0.17 TCGA-86-8073-01 2 235950100 235950102 GCC - SH3BP4 In_Frame_Del p.P231del 0.19 TCGA-86-8073-01 2 238296668 238296668 G T COL6A3 Missense_Mutation p.P290H 0.11 probably_damaging(0.997) TCGA-86-8073-01 2 241724411 241724411 C A KIF1A Nonsense_Mutation p.E239* 0.18 TCGA-86-8073-01 2 242075338 242075338 C A PASK Silent p.G418G 0.14 TCGA-86-8073-01 2 24239075 24239075 G T MFSD2B Missense_Mutation p.G91V 0.11 deleterious(0.02) probably_damaging(0.994) TCGA-86-8073-01 2 242794883 242794883 C A PDCD1 Missense_Mutation p.S109I 0.19 deleterious(0.02) probably_damaging(0.952) TCGA-86-8073-01 2 24483995 24483995 C T ITSN2 Missense_Mutation p.V888I 0.15 tolerated(0.56) unknown(0) TCGA-86-8073-01 2 24929433 24929435 CTA TT NCOA1 Splice_Site p.X366_splice 0.12 TCGA-86-8073-01 2 25174424 25174424 C G DNAJC27 Splice_Site p.X177_splice 0.18 TCGA-86-8073-01 2 25457161 25457161 A G DNMT3A Missense_Mutation p.F909S 0.17 deleterious(0) probably_damaging(0.94) TCGA-86-8073-01 2 25469071 25469071 C A DNMT3A Nonsense_Mutation p.E463* 0.27 TCGA-86-8073-01 2 26678072 26678072 G C DRC1 Missense_Mutation p.A713P 0.06 tolerated(0.13) benign(0.242) TCGA-86-8073-01 2 26818154 26818154 A T CIB4 Missense_Mutation p.V73E 0.16 deleterious(0) probably_damaging(0.997) TCGA-86-8073-01 2 27545369 27545369 C G MPV17 Missense_Mutation p.A6P 0.15 tolerated(0.2) possibly_damaging(0.828) TCGA-86-8073-01 2 27801784 27801784 T C C2orf16 Missense_Mutation p.I782T 0.10 tolerated(0.45) benign(0.046) TCGA-86-8073-01 2 27851908 27851908 G T GPN1 Missense_Mutation p.G9C 0.13 deleterious_low_confidence(0.01) probably_damaging(0.965) TCGA-86-8073-01 2 29293652 29293652 G T C2orf71 Missense_Mutation p.P1159Q 0.18 tolerated(0.05) possibly_damaging(0.577) TCGA-86-8073-01 2 29294136 29294136 T C C2orf71 Missense_Mutation p.R998G 0.10 deleterious(0) probably_damaging(0.964) TCGA-86-8073-01 2 30790929 30790929 A T LCLAT1 Missense_Mutation p.N210I 0.22 tolerated(0.2) possibly_damaging(0.601) TCGA-86-8073-01 2 31215802 31215802 C G GALNT14 Intron 0.20 TCGA-86-8073-01 2 33412028 33412028 G T LTBP1 Missense_Mutation p.G436V 0.12 deleterious(0.03) benign(0.288) TCGA-86-8073-01 2 33623606 33623606 G T LTBP1 Silent p.L1720L 0.07 TCGA-86-8073-01 2 3598039 3598039 C T RNASEH1 Missense_Mutation p.D145N 0.04 deleterious(0) probably_damaging(1) TCGA-86-8073-01 2 3687888 3687888 G T COLEC11 Missense_Mutation p.D113Y 0.07 tolerated(1) probably_damaging(0.959) TCGA-86-8073-01 2 3691460 3691460 G T COLEC11 Missense_Mutation p.A204S 0.13 deleterious(0.05) probably_damaging(0.999) TCGA-86-8073-01 2 36986202 36986202 G T VIT Intron 0.17 TCGA-86-8073-01 2 37000973 37000973 G T VIT Missense_Mutation p.R240M 0.06 tolerated_low_confidence(0.22) benign(0.128) TCGA-86-8073-01 2 37365452 37365452 A G EIF2AK2 Silent p.N216N 0.11 TCGA-86-8073-01 2 46609651 46609651 G T EPAS1 Missense_Mutation p.G792V 0.06 deleterious(0.01) benign(0.016) TCGA-86-8073-01 2 48061991 48061991 T A FBXO11 Missense_Mutation p.K246M 0.15 tolerated(0.19) benign(0.354) TCGA-86-8073-01 2 48573417 48573417 G T FOXN2 Missense_Mutation p.A22S 0.14 tolerated(0.95) benign(0.075) TCGA-86-8073-01 2 49195982 49195982 C T FSHR Missense_Mutation p.G237S 0.13 deleterious(0.02) probably_damaging(0.982) TCGA-86-8073-01 2 50850508 50850508 C A NRXN1 Nonsense_Mutation p.G393* 0.12 TCGA-86-8073-01 2 54176329 54176329 C T PSME4 Missense_Mutation p.E112K 0.12 deleterious(0) probably_damaging(0.937) TCGA-86-8073-01 2 54482415 54482415 A T TSPYL6 Missense_Mutation p.C292S 0.10 deleterious(0) probably_damaging(0.917) TCGA-86-8073-01 2 56420383 56420383 C A CCDC85A Missense_Mutation p.H350N 0.10 deleterious_low_confidence(0.04) possibly_damaging(0.585) TCGA-86-8073-01 2 60998691 60998691 T C PAPOLG Missense_Mutation p.I177T 0.15 deleterious(0) probably_damaging(0.968) TCGA-86-8073-01 2 64141351 64141351 T A VPS54 Missense_Mutation p.T767S 0.18 tolerated(0.51) probably_damaging(0.912) TCGA-86-8073-01 2 64193019 64193019 C A VPS54 Missense_Mutation p.G192C 0.16 deleterious(0.01) possibly_damaging(0.789) TCGA-86-8073-01 2 69577254 69577254 C A GFPT1 Silent p.P267P 0.07 TCGA-86-8073-01 2 70188089 70188089 C A ASPRV1 Missense_Mutation p.K244N 0.21 tolerated(0.1) probably_damaging(0.996) TCGA-86-8073-01 2 70917972 70917972 C A ADD2 Missense_Mutation p.M265I 0.09 deleterious(0.02) possibly_damaging(0.447) TCGA-86-8073-01 2 71753374 71753374 G T DYSF Missense_Mutation p.D392Y 0.07 deleterious(0) probably_damaging(0.983) TCGA-86-8073-01 2 74184279 74184279 G T DGUOK Missense_Mutation p.A207S 0.12 deleterious(0.02) benign(0.057) TCGA-86-8073-01 2 74491383 74491383 T A SLC4A5 Silent p.P202P 0.25 TCGA-86-8073-01 2 74709298 74709298 C A CCDC142 Missense_Mutation p.V223F 0.12 deleterious(0.04) possibly_damaging(0.48) TCGA-86-8073-01 2 76975884 76975884 G T LRRTM4 Missense_Mutation p.S570R 0.06 tolerated_low_confidence(0.07) benign(0.058) TCGA-86-8073-01 2 79348716 79348716 G T REG1A Missense_Mutation p.Q31H 0.20 deleterious(0) benign(0.338) TCGA-86-8073-01 2 79385458 79385458 G A REG3A Silent p.P109P 0.26 TCGA-86-8073-01 2 80101199 80101199 C A CTNNA2 Intron 0.15 TCGA-86-8073-01 2 80136766 80136766 G T CTNNA2 Missense_Mutation p.R300L 0.17 deleterious(0) probably_damaging(0.995) TCGA-86-8073-01 2 90259966 90259966 C A IGKV1D-8 Silent p.V23V 0.41 TCGA-86-8073-01 2 90458656 90458656 G A CH17-132F21.1 Missense_Mutation p.S111N 0.08 TCGA-86-8073-01 2 95815708 95815708 C A ZNF514 Missense_Mutation p.M174I 0.17 tolerated(0.7) benign(0) TCGA-86-8073-01 2 96040643 96040643 C T KCNIP3 Silent p.Y118Y 0.18 TCGA-86-8073-01 2 96993917 96993917 C T ITPRIPL1 Silent p.V524V 0.18 TCGA-86-8073-01 2 97024810 97024810 A T NCAPH Silent p.G412G 0.16 TCGA-86-8073-01 2 98373665 98373665 T A TMEM131 Missense_Mutation p.D1850V 0.20 deleterious_low_confidence(0.03) benign(0.036) TCGA-86-8073-01 3 101571784 101571785 - TGAT NFKBIZ Frame_Shift_Ins p.G174* 0.13 TCGA-86-8073-01 3 101576180 101576180 G C NFKBIZ Missense_Mutation p.Q660H 0.11 tolerated(0.07) probably_damaging(0.995) TCGA-86-8073-01 3 10970958 10970958 G A SLC6A11 Missense_Mutation p.R435Q 0.19 deleterious(0.04) probably_damaging(0.999) TCGA-86-8073-01 3 113320482 113320482 G C SIDT1 Missense_Mutation p.E365Q 0.18 tolerated(0.23) benign(0.342) TCGA-86-8073-01 3 11685043 11685043 T A VGLL4 5'UTR 0.13 TCGA-86-8073-01 3 118865674 118865674 G T C3orf30 Missense_Mutation p.R213I 0.10 deleterious(0.01) benign(0.128) TCGA-86-8073-01 3 119721030 119721030 C T GSK3B Missense_Mutation p.D49N 0.12 deleterious(0.03) possibly_damaging(0.899) TCGA-86-8073-01 3 120957921 120957921 T A STXBP5L Missense_Mutation p.Y430N 0.23 deleterious(0) probably_damaging(1) TCGA-86-8073-01 3 121178959 121178959 C A POLQ Missense_Mutation p.A2364S 0.15 tolerated(0.12) probably_damaging(1) TCGA-86-8073-01 3 122002966 122002966 A T CASR Missense_Mutation p.N732I 0.13 tolerated(0.19) probably_damaging(0.987) TCGA-86-8073-01 3 122003526 122003526 A T CASR Missense_Mutation p.T919S 0.14 tolerated_low_confidence(0.38) benign(0.004) TCGA-86-8073-01 3 122060322 122060322 G A CSTA Missense_Mutation p.V69I 0.16 tolerated(0.13) benign(0.026) TCGA-86-8073-01 3 123634225 123634225 T A CCDC14 Nonsense_Mutation p.K714* 0.19 TCGA-86-8073-01 3 124048717 124048717 G T KALRN Nonsense_Mutation p.G430* 0.19 TCGA-86-8073-01 3 124048718 124048718 G T KALRN Missense_Mutation p.G430V 0.19 tolerated(0.32) benign(0.236) TCGA-86-8073-01 3 124739876 124739876 C A HEG1 Missense_Mutation p.G338C 0.13 deleterious(0) probably_damaging(0.936) TCGA-86-8073-01 3 125223524 125223524 G C SNX4 Missense_Mutation p.T69S 0.16 tolerated(0.29) benign(0.05) TCGA-86-8073-01 3 127379981 127379981 G T PODXL2 Missense_Mutation p.R370S 0.31 tolerated(0.16) benign(0.013) TCGA-86-8073-01 3 129251193 129251193 C A RHO Silent p.V210V 0.14 TCGA-86-8073-01 3 130650866 130650866 G T ATP2C1 Missense_Mutation p.A74S 0.10 tolerated(0.15) benign(0.028) TCGA-86-8073-01 3 130714886 130714886 G T ATP2C1 Splice_Site p.X720_splice 0.16 TCGA-86-8073-01 3 133169251 133169251 G T BFSP2 Missense_Mutation p.Q278H 0.21 tolerated(1) benign(0.002) TCGA-86-8073-01 3 13381436 13381436 C A NUP210 Missense_Mutation p.G1130V 0.26 deleterious(0) possibly_damaging(0.897) TCGA-86-8073-01 3 134362165 134362165 G A KY Silent p.N85N 0.22 TCGA-86-8073-01 3 134670447 134670447 G T EPHB1 Missense_Mutation p.V120F 0.18 deleterious(0) benign(0.285) TCGA-86-8073-01 3 13659780 13659780 G T FBLN2 Missense_Mutation p.R645L 0.25 tolerated(0.5) benign(0.037) TCGA-86-8073-01 3 136664879 136664879 A T NCK1 Silent p.P227P 0.12 TCGA-86-8073-01 3 138724582 138724582 C A PRR23A Missense_Mutation p.A177S 0.13 tolerated(0.05) possibly_damaging(0.672) TCGA-86-8073-01 3 139257785 139257785 C A RBP1 Missense_Mutation p.L92F 0.09 deleterious(0.02) possibly_damaging(0.796) TCGA-86-8073-01 3 140281066 140281066 C A CLSTN2 Missense_Mutation p.Q710K 0.12 tolerated(0.38) benign(0.002) TCGA-86-8073-01 3 141327491 141327491 G C RASA2 Missense_Mutation p.C726S 0.12 deleterious(0) probably_damaging(0.991) TCGA-86-8073-01 3 142567087 142567087 C A PCOLCE2 Missense_Mutation p.M140I 0.13 tolerated(0.36) benign(0.004) TCGA-86-8073-01 3 146239733 146239733 C A PLSCR1 Missense_Mutation p.G155W 0.21 deleterious(0) probably_damaging(0.961) TCGA-86-8073-01 3 147113650 147113650 C G ZIC4 Missense_Mutation p.R276P 0.17 deleterious(0) probably_damaging(0.973) TCGA-86-8073-01 3 149216656 149216656 G A TM4SF4 Silent p.L183L 0.16 TCGA-86-8073-01 3 14942523 14942523 C A FGD5 Silent p.L1073L 0.16 TCGA-86-8073-01 3 154146573 154146573 C A GPR149 Missense_Mutation p.G278C 0.13 deleterious(0.03) benign(0.089) TCGA-86-8073-01 3 154147131 154147131 G T GPR149 Missense_Mutation p.Q92K 0.10 deleterious(0.01) benign(0.152) TCGA-86-8073-01 3 154147312 154147312 G A GPR149 Silent p.T31T 0.14 TCGA-86-8073-01 3 156009789 156009789 T C KCNAB1 Intron 0.17 TCGA-86-8073-01 3 157817718 157817718 G A SHOX2 Silent p.A235A 0.14 TCGA-86-8073-01 3 160395094 160395094 A G ARL14 5'UTR 0.15 TCGA-86-8073-01 3 160804331 160804331 G A B3GALNT1 Missense_Mutation p.S71L 0.11 tolerated(0.4) benign(0) TCGA-86-8073-01 3 164712131 164712131 A C SI Missense_Mutation p.I1585M 0.17 deleterious(0.01) probably_damaging(0.961) TCGA-86-8073-01 3 164714386 164714386 G T SI Silent p.T1543T 0.05 TCGA-86-8073-01 3 164907848 164907848 T A SLITRK3 Silent p.G257G 0.15 TCGA-86-8073-01 3 165548726 165548726 G T BCHE Silent p.I32I 0.22 TCGA-86-8073-01 3 167217976 167217976 C A WDR49 Missense_Mutation p.R647L 0.14 tolerated(0.77) benign(0.001) TCGA-86-8073-01 3 169889204 169889204 G A PHC3 Missense_Mutation p.P124L 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-86-8073-01 3 169981184 169981184 G T PRKCI Nonsense_Mutation p.E111* 0.22 TCGA-86-8073-01 3 17053581 17053581 A T PLCL2 Missense_Mutation p.T789S 0.09 tolerated(0.35) benign(0.004) TCGA-86-8073-01 3 171410226 171410226 C G PLD1 Missense_Mutation p.G412R 0.11 deleterious(0) probably_damaging(1) TCGA-86-8073-01 3 173525562 173525562 G T NLGN1 Missense_Mutation p.V196F 0.16 deleterious(0) benign(0.376) TCGA-86-8073-01 3 174951947 174951947 G T NAALADL2 Missense_Mutation p.D258Y 0.20 deleterious(0) possibly_damaging(0.907) TCGA-86-8073-01 3 178984583 178984583 G T KCNMB3 5'UTR 0.38 TCGA-86-8073-01 3 179593237 179593237 G T PEX5L Missense_Mutation p.D178E 0.19 tolerated_low_confidence(0.92) benign(0.009) TCGA-86-8073-01 3 184049387 184049387 G T EIF4G1 Missense_Mutation p.W1470L 0.11 deleterious(0.02) possibly_damaging(0.822) TCGA-86-8073-01 3 185146344 185146344 A T MAP3K13 5'UTR 0.43 TCGA-86-8073-01 3 185367198 185367198 C A IGF2BP2 Missense_Mutation p.G529V 0.14 deleterious(0) probably_damaging(1) TCGA-86-8073-01 3 186459824 186459824 C A KNG1 Missense_Mutation p.P547T 0.18 tolerated(0.53) benign(0.017) TCGA-86-8073-01 3 188584129 188584129 G T LPP Missense_Mutation p.A518S 0.26 deleterious(0.03) benign(0.277) TCGA-86-8073-01 3 192516607 192516607 C A MB21D2 Missense_Mutation p.L348F 0.21 deleterious(0) probably_damaging(1) TCGA-86-8073-01 3 194081489 194081489 C T LRRC15 Missense_Mutation p.G101E 0.14 tolerated(0.08) benign(0.133) TCGA-86-8073-01 3 195960147 195960147 C A SLC51A 3'UTR 0.30 TCGA-86-8073-01 3 196054342 196054342 G T TM4SF19 Missense_Mutation p.N40K 0.15 deleterious(0.04) benign(0.345) TCGA-86-8073-01 3 196792249 196792249 C T DLG1 Silent p.Q790Q 0.08 TCGA-86-8073-01 3 25805755 25805755 C A NGLY1 Silent p.L98L 0.20 TCGA-86-8073-01 3 27203990 27203990 C A NEK10 Missense_Mutation p.S991I 0.08 deleterious(0.02) possibly_damaging(0.82) TCGA-86-8073-01 3 36570374 36570374 C T STAC Missense_Mutation p.A336V 0.16 deleterious(0) probably_damaging(1) TCGA-86-8073-01 3 38050888 38050888 T A PLCD1 Missense_Mutation p.D515V 0.15 deleterious(0.02) possibly_damaging(0.597) TCGA-86-8073-01 3 44763337 44763337 G T ZNF502 Missense_Mutation p.R343I 0.18 deleterious(0) probably_damaging(1) TCGA-86-8073-01 3 46414775 46414775 C A CCR5 Missense_Mutation p.L128M 0.16 deleterious(0.01) probably_damaging(1) TCGA-86-8073-01 3 47476601 47476601 G T SCAP Missense_Mutation p.P50Q 0.24 deleterious(0) probably_damaging(0.993) TCGA-86-8073-01 3 49313910 49313911 CT - C3orf62 Frame_Shift_Del p.E132Vfs*27 0.19 TCGA-86-8073-01 3 49693344 49693344 G T BSN Missense_Mutation p.G2119C 0.15 unknown(0) TCGA-86-8073-01 3 50324602 50324602 T C LSMEM2 Missense_Mutation p.L155P 0.41 deleterious(0) probably_damaging(0.972) TCGA-86-8073-01 3 51266193 51266193 C T DOCK3 Silent p.I583I 0.22 TCGA-86-8073-01 3 52553345 52553345 C A STAB1 Silent p.I1700I 0.19 TCGA-86-8073-01 3 53766914 53766914 C T CACNA1D Missense_Mutation p.S869L 0.29 deleterious(0) benign(0.425) TCGA-86-8073-01 3 54676189 54676189 A T CACNA2D3 Missense_Mutation p.Q363L 0.09 deleterious(0) probably_damaging(0.996) TCGA-86-8073-01 3 57272145 57272145 G T APPL1 Splice_Site p.X95_splice 0.24 TCGA-86-8073-01 3 62739367 62739367 T A CADPS Nonsense_Mutation p.K213* 0.14 TCGA-86-8073-01 3 73433768 73433768 A T PDZRN3 Missense_Mutation p.L650Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 3 77629120 77629120 C A ROBO2 Missense_Mutation p.T800K 0.13 deleterious(0.02) possibly_damaging(0.832) TCGA-86-8073-01 3 86114811 86114811 G C CADM2 Missense_Mutation p.V376L 0.06 deleterious(0.01) probably_damaging(0.978) TCGA-86-8073-01 3 93595945 93595945 C A PROS1 Missense_Mutation p.V579F 0.17 deleterious(0) probably_damaging(0.977) TCGA-86-8073-01 3 98217052 98217052 C A OR5K2 Missense_Mutation p.H176Q 0.19 deleterious(0.01) possibly_damaging(0.831) TCGA-86-8073-01 4 100806824 100806824 C G LAMTOR3 Missense_Mutation p.D38H 0.12 deleterious(0) possibly_damaging(0.865) TCGA-86-8073-01 4 104082591 104082591 T A CENPE Missense_Mutation p.Q622H 0.17 probably_damaging(0.987) TCGA-86-8073-01 4 10444940 10444940 T - ZNF518B Frame_Shift_Del p.R1005Gfs*3 0.11 TCGA-86-8073-01 4 106880217 106880217 G A NPNT Missense_Mutation p.G457R 0.12 deleterious(0.01) probably_damaging(1) TCGA-86-8073-01 4 110882025 110882025 G A EGF Missense_Mutation p.V357I 0.21 tolerated(0.23) probably_damaging(0.923) TCGA-86-8073-01 4 113538965 113538965 G A C4orf21 Nonsense_Mutation p.Q745* 0.10 TCGA-86-8073-01 4 114458560 114458560 C A CAMK2D Missense_Mutation p.A152S 0.19 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-86-8073-01 4 115773881 115773881 C T NDST4 Missense_Mutation p.G606R 0.14 deleterious(0) probably_damaging(0.993) TCGA-86-8073-01 4 119200429 119200429 G T PRSS12 3'Flank 0.07 TCGA-86-8073-01 4 119944630 119944630 G A SYNPO2 Missense_Mutation p.D51N 0.23 deleterious(0) probably_damaging(1) TCGA-86-8073-01 4 123161381 123161381 G T KIAA1109 Missense_Mutation p.W1515L 0.13 probably_damaging(0.997) TCGA-86-8073-01 4 123175998 123175998 G T KIAA1109 Missense_Mutation p.G2038V 0.17 possibly_damaging(0.856) TCGA-86-8073-01 4 126240795 126240795 G T FAT4 Missense_Mutation p.V1077L 0.06 probably_damaging(0.986) TCGA-86-8073-01 4 126371597 126371597 T A FAT4 Silent p.S3142S 0.22 TCGA-86-8073-01 4 126411190 126411190 G C FAT4 Missense_Mutation p.A4405P 0.19 possibly_damaging(0.719) TCGA-86-8073-01 4 128584668 128584668 A T INTU Missense_Mutation p.S301C 0.19 deleterious(0.02) possibly_damaging(0.649) TCGA-86-8073-01 4 134073204 134073204 G T PCDH10 Nonsense_Mutation p.E637* 0.21 TCGA-86-8073-01 4 134073851 134073851 C A PCDH10 Silent p.P852P 0.19 TCGA-86-8073-01 4 144359300 144359300 C T GAB1 Missense_Mutation p.R248C 0.16 deleterious(0) probably_damaging(0.95) TCGA-86-8073-01 4 147561806 147561806 C A POU4F2 Nonsense_Mutation p.S359* 0.10 TCGA-86-8073-01 4 151203601 151203601 C A LRBA Splice_Site p.X2783_splice 0.13 TCGA-86-8073-01 4 153332934 153332934 C A FBXW7 Missense_Mutation p.V8L 0.17 tolerated_low_confidence(0.18) unknown(0) TCGA-86-8073-01 4 155505869 155505869 C A FGA Nonsense_Mutation p.G670* 0.16 TCGA-86-8073-01 4 155505870 155505870 C T FGA Silent p.L669L 0.16 TCGA-86-8073-01 4 156723469 156723469 G T GUCY1B3 Intron 0.15 TCGA-86-8073-01 4 16165040 16165040 C A TAPT1 Missense_Mutation p.G532V 0.15 tolerated(0.26) benign(0.164) TCGA-86-8073-01 4 16165041 16165041 C T TAPT1 Missense_Mutation p.G532S 0.14 tolerated(0.77) benign(0.01) TCGA-86-8073-01 4 164271784 164271784 T A NPY5R Missense_Mutation p.L120H 0.18 deleterious(0) probably_damaging(0.997) TCGA-86-8073-01 4 169342939 169342939 C A DDX60L Missense_Mutation p.G789V 0.14 deleterious(0) probably_damaging(0.982) TCGA-86-8073-01 4 169433435 169433435 G T PALLD Missense_Mutation p.Q260H 0.11 tolerated(0.09) benign(0.002) TCGA-86-8073-01 4 17528582 17528582 C T CLRN2 Silent p.C192C 0.22 TCGA-86-8073-01 4 175896789 175896789 G T ADAM29 Missense_Mutation p.R38M 0.21 deleterious(0) probably_damaging(0.916) TCGA-86-8073-01 4 175897428 175897428 G T ADAM29 Missense_Mutation p.W251L 0.10 deleterious(0) probably_damaging(0.989) TCGA-86-8073-01 4 17816555 17816555 G C NCAPG Missense_Mutation p.K208N 0.19 deleterious(0.01) benign(0.23) TCGA-86-8073-01 4 183650201 183650201 C A TENM3 Missense_Mutation p.P818T 0.18 deleterious(0) possibly_damaging(0.908) TCGA-86-8073-01 4 185038162 185038162 G T ENPP6 Missense_Mutation p.N234K 0.29 deleterious(0) possibly_damaging(0.767) TCGA-86-8073-01 4 187172427 187172427 T C KLKB1 Silent p.P271P 0.17 TCGA-86-8073-01 4 187518075 187518075 T A FAT1 Missense_Mutation p.S4207C 0.23 benign(0.001) TCGA-86-8073-01 4 187524086 187524086 C G FAT1 Missense_Mutation p.C3818S 0.23 benign(0.24) TCGA-86-8073-01 4 189020208 189020208 C G TRIML2 Missense_Mutation p.G151A 0.07 tolerated(0.83) benign(0) TCGA-86-8073-01 4 189068504 189068504 G A TRIML1 Missense_Mutation p.C462Y 0.13 deleterious(0) probably_damaging(0.998) TCGA-86-8073-01 4 189068543 189068543 C A TRIML1 3'UTR 0.12 TCGA-86-8073-01 4 20482341 20482349 AACTGGATT - SLIT2 In_Frame_Del p.Q157_Y160delinsH 0.10 TCGA-86-8073-01 4 24542524 24542524 C A DHX15 Silent p.V511V 0.22 TCGA-86-8073-01 4 2829385 2829385 G T SH3BP2 Missense_Mutation p.E247D 0.18 tolerated_low_confidence(0.56) benign(0.118) TCGA-86-8073-01 4 38774914 38774914 A T TLR10 Silent p.L766L 0.13 TCGA-86-8073-01 4 39344009 39344009 C A RFC1 Missense_Mutation p.G96V 0.09 tolerated_low_confidence(0.2) benign(0.004) TCGA-86-8073-01 4 40122932 40122932 A G N4BP2 Silent p.P1067P 0.09 TCGA-86-8073-01 4 4249402 4249402 C A TMEM128 5'UTR 0.13 TCGA-86-8073-01 4 42895328 42895328 A T GRXCR1 Missense_Mutation p.K15N 0.05 deleterious(0.02) benign(0.094) TCGA-86-8073-01 4 52926953 52926953 C A SPATA18 Missense_Mutation p.R67S 0.07 tolerated(0.11) benign(0.027) TCGA-86-8073-01 4 53740143 53740143 C A SCFD2 Missense_Mutation p.G683V 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-86-8073-01 4 5461931 5461931 A G STK32B Silent p.A295A 0.15 TCGA-86-8073-01 4 54967986 54967986 G T GSX2 Missense_Mutation p.G271V 0.22 deleterious(0.03) benign(0.327) TCGA-86-8073-01 4 5664865 5664865 C A EVC2 Missense_Mutation p.D372Y 0.22 deleterious(0) possibly_damaging(0.877) TCGA-86-8073-01 4 56726645 56726645 A T EXOC1 Nonsense_Mutation p.K65* 0.17 TCGA-86-8073-01 4 56738125 56738125 G T EXOC1 Splice_Site p.X358_splice 0.21 TCGA-86-8073-01 4 57182676 57182676 C G KIAA1211 Missense_Mutation p.P1003R 0.17 tolerated(0.67) probably_damaging(0.946) TCGA-86-8073-01 4 66280043 66280043 C A EPHA5 Missense_Mutation p.G549V 0.24 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 4 66467477 66467477 G T EPHA5 Missense_Mutation p.N264K 0.09 tolerated(0.17) probably_damaging(0.968) TCGA-86-8073-01 4 68606375 68606375 A T GNRHR Silent p.V270V 0.06 TCGA-86-8073-01 4 68688059 68688059 A T TMPRSS11D Missense_Mutation p.I418N 0.15 deleterious(0) possibly_damaging(0.884) TCGA-86-8073-01 4 68938040 68938040 C A TMPRSS11F Splice_Site p.X172_splice 0.21 TCGA-86-8073-01 4 6925363 6925363 G T TBC1D14 Missense_Mutation p.A83S 0.12 tolerated_low_confidence(0.38) benign(0.038) TCGA-86-8073-01 4 69816779 69816779 A G UGT2A3 Missense_Mutation p.Y234H 0.26 deleterious(0) probably_damaging(0.994) TCGA-86-8073-01 4 69973832 69973832 A T UGT2B7 Missense_Mutation p.T368S 0.25 deleterious(0.02) possibly_damaging(0.503) TCGA-86-8073-01 4 70455349 70455349 C G UGT2A1 Missense_Mutation p.R608T 0.04 tolerated(0.06) benign(0.14) TCGA-86-8073-01 4 71255626 71255626 T A SMR3B 3'UTR 0.17 TCGA-86-8073-01 4 71275743 71275743 G T PROL1 Missense_Mutation p.S233I 0.12 deleterious_low_confidence(0.04) unknown(0) TCGA-86-8073-01 4 71702013 71702013 G C GRSF1 Missense_Mutation p.L126V 0.08 tolerated(0.3) benign(0.239) TCGA-86-8073-01 4 73013143 73013143 C A NPFFR2 Missense_Mutation p.L395I 0.13 tolerated(0.11) possibly_damaging(0.777) TCGA-86-8073-01 4 75174855 75174855 C T EPGN Missense_Mutation p.P30L 0.13 tolerated(0.28) benign(0.011) TCGA-86-8073-01 4 77691984 77691984 C G SHROOM3 Missense_Mutation p.S1852W 0.11 deleterious(0) probably_damaging(0.987) TCGA-86-8073-01 4 79229352 79229352 G T FRAS1 Missense_Mutation p.G556V 0.17 probably_damaging(0.951) TCGA-86-8073-01 4 8034409 8034409 T A ABLIM2 Intron 0.20 TCGA-86-8073-01 4 8108360 8108360 C A ABLIM2 Silent p.S5S 0.13 TCGA-86-8073-01 4 85672768 85672768 C A WDFY3 Silent p.V1947V 0.13 TCGA-86-8073-01 4 860797 860797 G A GAK Missense_Mutation p.P940L 0.05 deleterious(0.02) possibly_damaging(0.705) TCGA-86-8073-01 4 8621311 8621311 C G CPZ Missense_Mutation p.S642R 0.08 deleterious(0) benign(0.187) TCGA-86-8073-01 4 88415459 88415459 C T SPARCL1 Missense_Mutation p.E165K 0.14 deleterious(0.04) benign(0.085) TCGA-86-8073-01 4 88584224 88584224 G A DMP1 Missense_Mutation p.G432S 0.22 tolerated(0.19) unknown(0) TCGA-86-8073-01 4 88732539 88732539 C A IBSP Missense_Mutation p.T144K 0.11 tolerated(0.35) benign(0.122) TCGA-86-8073-01 4 88732820 88732820 A G IBSP Missense_Mutation p.T238A 0.21 deleterious(0.03) possibly_damaging(0.724) TCGA-86-8073-01 4 88957380 88957380 G A PKD2 Missense_Mutation p.G240S 0.13 deleterious(0.02) possibly_damaging(0.68) TCGA-86-8073-01 4 88957381 88957381 G T PKD2 Missense_Mutation p.G240V 0.13 deleterious(0.02) probably_damaging(0.972) TCGA-86-8073-01 4 89192218 89192218 C A PPM1K Intron 0.12 TCGA-86-8073-01 4 90857691 90857691 C A MMRN1 Missense_Mutation p.P954T 0.06 deleterious(0.03) benign(0.266) TCGA-86-8073-01 4 90857692 90857692 C A MMRN1 Missense_Mutation p.P954Q 0.06 deleterious(0) possibly_damaging(0.894) TCGA-86-8073-01 4 94690475 94690475 C A GRID2 Silent p.A825A 0.11 TCGA-86-8073-01 4 94690476 94690476 C A GRID2 Missense_Mutation p.L826M 0.11 deleterious(0) probably_damaging(0.998) TCGA-86-8073-01 4 96090419 96090419 G T UNC5C Missense_Mutation p.T921K 0.22 tolerated(0.08) benign(0.175) TCGA-86-8073-01 4 96123999 96123999 G T UNC5C Silent p.S673S 0.12 TCGA-86-8073-01 4 96124000 96124000 G T UNC5C Missense_Mutation p.S673Y 0.12 deleterious(0) probably_damaging(0.935) TCGA-86-8073-01 4 96762070 96762070 G A PDHA2 Missense_Mutation p.V257I 0.18 tolerated(0.31) benign(0.015) TCGA-86-8073-01 5 107197356 107197356 C A FBXL17 3'UTR 0.35 TCGA-86-8073-01 5 107197357 107197357 C A FBXL17 3'UTR 0.32 TCGA-86-8073-01 5 109155988 109155988 C T MAN2A1 Missense_Mutation p.T799I 0.37 deleterious(0.05) probably_damaging(0.932) TCGA-86-8073-01 5 11159692 11159692 G A CTNND2 Silent p.L719L 0.10 TCGA-86-8073-01 5 11159808 11159808 G T CTNND2 Missense_Mutation p.A680E 0.05 tolerated(0.13) benign(0.011) TCGA-86-8073-01 5 11346628 11346628 G T CTNND2 Missense_Mutation p.P495Q 0.09 tolerated(0.27) benign(0.005) TCGA-86-8073-01 5 115782558 115782558 G T SEMA6A Silent p.S948S 0.24 TCGA-86-8073-01 5 115813761 115813761 C T SEMA6A Missense_Mutation p.C506Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 5 119800199 119800199 G A PRR16 5'UTR 0.25 TCGA-86-8073-01 5 1235747 1235747 T C SLC6A18 Silent p.C197C 0.20 TCGA-86-8073-01 5 1253849 1253849 C T TERT Silent p.L1131L 0.28 TCGA-86-8073-01 5 130797465 130797465 G T RAPGEF6 Missense_Mutation p.H933N 0.27 deleterious(0.03) possibly_damaging(0.787) TCGA-86-8073-01 5 130815360 130815360 G A RAPGEF6 Missense_Mutation p.H643Y 0.29 tolerated(1) benign(0.001) TCGA-86-8073-01 5 132198042 132198042 G T GDF9 Missense_Mutation p.Q202K 0.17 tolerated(0.5) benign(0.003) TCGA-86-8073-01 5 137089565 137089565 G C HNRNPA0 Missense_Mutation p.A64G 0.13 deleterious(0) probably_damaging(0.998) TCGA-86-8073-01 5 13759056 13759056 C A DNAH5 Missense_Mutation p.A3440S 0.06 possibly_damaging(0.694) TCGA-86-8073-01 5 140188142 140188142 A T PCDHA4 Missense_Mutation p.Q457L 0.26 deleterious_low_confidence(0) benign(0.188) TCGA-86-8073-01 5 140502450 140502450 T A PCDHB4 Silent p.T290T 0.36 TCGA-86-8073-01 5 140559143 140559143 G T PCDHB8 Missense_Mutation p.D510Y 0.20 deleterious_low_confidence(0) possibly_damaging(0.7) TCGA-86-8073-01 5 140563723 140563723 G T PCDHB16 Missense_Mutation p.R530L 0.04 tolerated_low_confidence(0.11) benign(0.009) TCGA-86-8073-01 5 140564264 140564264 G T PCDHB16 Silent p.A710A 0.22 TCGA-86-8073-01 5 140589197 140589197 C A PCDHB12 Missense_Mutation p.P240T 0.29 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-86-8073-01 5 140594476 140594476 C A PCDHB13 Missense_Mutation p.L261M 0.30 deleterious_low_confidence(0.03) benign(0.121) TCGA-86-8073-01 5 140719830 140719830 C A PCDHGA2 Missense_Mutation p.S431Y 0.34 deleterious_low_confidence(0) possibly_damaging(0.894) TCGA-86-8073-01 5 140719831 140719831 C A PCDHGA2 Silent p.S431S 0.34 TCGA-86-8073-01 5 143586837 143586837 G T KCTD16 Missense_Mutation p.R187L 0.16 deleterious(0) possibly_damaging(0.628) TCGA-86-8073-01 5 143586838 143586838 G T KCTD16 Silent p.R187R 0.16 TCGA-86-8073-01 5 14419894 14419894 G T TRIO Missense_Mutation p.G1656V 0.19 probably_damaging(0.973) TCGA-86-8073-01 5 15616168 15616168 G A FBXL7 Silent p.V38V 0.14 TCGA-86-8073-01 5 156464332 156464332 G A HAVCR1 Missense_Mutation p.T293I 0.25 deleterious(0.01) probably_damaging(0.934) TCGA-86-8073-01 5 161113240 161113240 G T GABRA6 Nonsense_Mutation p.E15* 0.26 TCGA-86-8073-01 5 161128507 161128507 C A GABRA6 Missense_Mutation p.P364T 0.24 tolerated(0.29) benign(0.077) TCGA-86-8073-01 5 161300334 161300334 A T GABRA1 Missense_Mutation p.Y156F 0.10 deleterious(0.02) benign(0.22) TCGA-86-8073-01 5 168189657 168189657 G A SLIT3 Silent p.C499C 0.08 TCGA-86-8073-01 5 169081460 169081460 G A DOCK2 Missense_Mutation p.D33N 0.05 deleterious(0) probably_damaging(0.987) TCGA-86-8073-01 5 169535671 169535671 C A FOXI1 3'UTR 0.22 TCGA-86-8073-01 5 176524539 176524539 C T FGFR4 Silent p.L757L 0.14 TCGA-86-8073-01 5 176707624 176707624 G T NSD1 Missense_Mutation p.R1894L 0.20 deleterious(0.01) possibly_damaging(0.684) TCGA-86-8073-01 5 178506844 178506844 A T ZNF354C Missense_Mutation p.N471Y 0.20 deleterious(0) probably_damaging(0.984) TCGA-86-8073-01 5 178553022 178553022 G T ADAMTS2 Missense_Mutation p.N909K 0.26 deleterious(0) probably_damaging(0.996) TCGA-86-8073-01 5 180582727 180582727 G T OR2V2 Missense_Mutation p.R262M 0.19 deleterious(0.02) probably_damaging(1) TCGA-86-8073-01 5 1879808 1879808 G A IRX4 Silent p.T182T 0.09 TCGA-86-8073-01 5 21755729 21755729 G T CDH12 Missense_Mutation p.A619E 0.16 deleterious(0) probably_damaging(0.993) TCGA-86-8073-01 5 24487793 24487793 C T CDH10 Silent p.G782G 0.33 TCGA-86-8073-01 5 24487900 24487900 A T CDH10 Missense_Mutation p.S747T 0.18 deleterious(0.02) probably_damaging(0.95) TCGA-86-8073-01 5 26881303 26881303 C A CDH9 Missense_Mutation p.G771V 0.11 deleterious(0) probably_damaging(1) TCGA-86-8073-01 5 26881305 26881305 C G CDH9 Missense_Mutation p.W770C 0.19 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 5 26885950 26885950 C G CDH9 Missense_Mutation p.R552P 0.09 tolerated(0.06) possibly_damaging(0.608) TCGA-86-8073-01 5 33576471 33576471 C A ADAMTS12 Silent p.L1220L 0.13 TCGA-86-8073-01 5 33576900 33576900 G T ADAMTS12 Missense_Mutation p.S1077R 0.49 tolerated(0.28) benign(0.001) TCGA-86-8073-01 5 33938277 33938277 G C RXFP3 3'UTR 0.07 TCGA-86-8073-01 5 36038112 36038112 G T UGT3A2 Missense_Mutation p.P361Q 0.43 deleterious(0) possibly_damaging(0.718) TCGA-86-8073-01 5 36038113 36038113 G T UGT3A2 Missense_Mutation p.P361T 0.42 deleterious(0.03) probably_damaging(0.938) TCGA-86-8073-01 5 36671254 36671254 G C SLC1A3 Missense_Mutation p.G148A 0.14 deleterious(0) probably_damaging(1) TCGA-86-8073-01 5 38406293 38406293 G T EGFLAM Missense_Mutation p.D260Y 0.08 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-86-8073-01 5 41015533 41015533 C A MROH2B Nonsense_Mutation p.E978* 0.08 TCGA-86-8073-01 5 42719334 42719334 T A GHR Silent p.A575A 0.12 TCGA-86-8073-01 5 45262183 45262183 C G HCN1 Missense_Mutation p.R838P 0.22 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-86-8073-01 5 45262236 45262236 C A HCN1 Silent p.T820T 0.52 TCGA-86-8073-01 5 45396633 45396633 G T HCN1 Silent p.I397I 0.07 TCGA-86-8073-01 5 49723986 49723986 G A EMB Missense_Mutation p.S63L 0.11 tolerated(0.29) benign(0.007) TCGA-86-8073-01 5 5191887 5191887 C T ADAMTS16 Missense_Mutation p.H433Y 0.12 deleterious(0) probably_damaging(1) TCGA-86-8073-01 5 5200278 5200278 G A ADAMTS16 Missense_Mutation p.M449I 0.15 tolerated(0.41) benign(0.006) TCGA-86-8073-01 5 52347346 52347346 G T ITGA2 Missense_Mutation p.G246C 0.20 deleterious(0) probably_damaging(1) TCGA-86-8073-01 5 63509536 63509536 G T RNF180 Missense_Mutation p.G128V 0.18 tolerated(0.56) benign(0.051) TCGA-86-8073-01 5 66479512 66479512 A T CD180 Missense_Mutation p.C387S 0.15 deleterious(0) probably_damaging(0.991) TCGA-86-8073-01 5 70805990 70805990 A T BDP1 Missense_Mutation p.K1024M 0.22 tolerated(0.08) possibly_damaging(0.804) TCGA-86-8073-01 5 70952721 70952721 C A MCCC2 3'UTR 0.18 TCGA-86-8073-01 5 71756921 71756921 C A ZNF366 Missense_Mutation p.G135C 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-86-8073-01 5 71757100 71757100 C A ZNF366 Missense_Mutation p.G75V 0.10 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-86-8073-01 5 73931140 73931140 A T ENC1 Missense_Mutation p.Y391N 0.35 deleterious(0) probably_damaging(0.992) TCGA-86-8073-01 5 74325039 74325039 G T GCNT4 Missense_Mutation p.P275H 0.17 tolerated(0.26) probably_damaging(0.972) TCGA-86-8073-01 5 76621379 76621379 G T PDE8B Missense_Mutation p.A139S 0.11 tolerated(0.4) probably_damaging(0.971) TCGA-86-8073-01 5 78351645 78351645 T C DMGDH Silent p.E121E 0.20 TCGA-86-8073-01 5 82808160 82808160 G A VCAN Silent p.E329E 0.32 TCGA-86-8073-01 5 82837869 82837869 C A VCAN Missense_Mutation p.A3016E 0.20 deleterious(0.02) benign(0.032) TCGA-86-8073-01 5 89757166 89757166 C A MBLAC2 Missense_Mutation p.D220Y 0.13 deleterious(0.02) probably_damaging(0.944) TCGA-86-8073-01 5 89979665 89979665 A G GPR98 Missense_Mutation p.Y1976C 0.19 possibly_damaging(0.722) TCGA-86-8073-01 5 92929399 92929399 C A NR2F1 Missense_Mutation p.P375T 0.20 deleterious(0.02) probably_damaging(0.919) TCGA-86-8073-01 6 100841656 100841656 G C SIM1 Missense_Mutation p.P426R 0.13 deleterious(0.05) benign(0.283) TCGA-86-8073-01 6 107111060 107111060 G T QRSL1 Nonsense_Mutation p.G456* 0.21 TCGA-86-8073-01 6 107390934 107390934 C G BEND3 Silent p.A487A 0.09 TCGA-86-8073-01 6 107391061 107391061 G A BEND3 Missense_Mutation p.P445L 0.13 deleterious(0.01) possibly_damaging(0.65) TCGA-86-8073-01 6 111543326 111543326 A T SLC16A10 Missense_Mutation p.E479V 0.17 deleterious(0.04) possibly_damaging(0.751) TCGA-86-8073-01 6 112438968 112438968 G A LAMA4 Missense_Mutation p.S1652L 0.16 deleterious(0) probably_damaging(0.998) TCGA-86-8073-01 6 116758051 116758051 A G DSE Missense_Mutation p.K807R 0.18 tolerated_low_confidence(0.09) possibly_damaging(0.616) TCGA-86-8073-01 6 117709068 117709068 C A ROS1 Missense_Mutation p.S630I 0.19 deleterious(0.01) possibly_damaging(0.577) TCGA-86-8073-01 6 117890851 117890851 C A GOPC Missense_Mutation p.G321W 0.15 deleterious(0) probably_damaging(0.997) TCGA-86-8073-01 6 123573561 123573561 T C TRDN Silent p.V657V 0.27 TCGA-86-8073-01 6 129618948 129618948 C A LAMA2 Missense_Mutation p.T992K 0.18 deleterious(0.01) benign(0.371) TCGA-86-8073-01 6 129674459 129674459 C A LAMA2 Missense_Mutation p.D1558E 0.04 tolerated(0.31) probably_damaging(0.936) TCGA-86-8073-01 6 129762067 129762067 C A LAMA2 Silent p.G2064G 0.21 TCGA-86-8073-01 6 130166913 130166913 C G TMEM244 Missense_Mutation p.E40Q 0.10 tolerated(0.06) benign(0.001) TCGA-86-8073-01 6 132939046 132939046 C G TAAR2 Missense_Mutation p.S100T 0.04 deleterious(0) possibly_damaging(0.867) TCGA-86-8073-01 6 132945412 132945412 C A TAAR2 Translation_Start_Site p.M1? 0.19 unknown(0) TCGA-86-8073-01 6 133052667 133052667 C A VNN3 Intron 0.12 TCGA-86-8073-01 6 134350376 134350376 C T SLC2A12 Nonsense_Mutation p.W196* 0.15 TCGA-86-8073-01 6 135360779 135360779 T C HBS1L Missense_Mutation p.E121G 0.03 tolerated(0.07) benign(0.217) TCGA-86-8073-01 6 139564012 139564012 C T TXLNB Missense_Mutation p.S569N 0.16 tolerated_low_confidence(1) benign(0.001) TCGA-86-8073-01 6 139591616 139591616 G T TXLNB Missense_Mutation p.Q222K 0.15 deleterious(0) probably_damaging(0.986) TCGA-86-8073-01 6 143091719 143091719 C A HIVEP2 Missense_Mutation p.G1386V 0.28 deleterious(0) probably_damaging(1) TCGA-86-8073-01 6 147123910 147123910 C G ADGB Intron 0.11 TCGA-86-8073-01 6 147830478 147830478 C G SAMD5 Silent p.L138L 0.18 TCGA-86-8073-01 6 151939332 151939332 C A CCDC170 3'UTR 0.12 TCGA-86-8073-01 6 152523046 152523046 C A SYNE1 Silent p.L7686L 0.17 TCGA-86-8073-01 6 152523056 152523056 G C SYNE1 Missense_Mutation p.A7683G 0.18 benign(0.013) TCGA-86-8073-01 6 152615155 152615155 C A SYNE1 Missense_Mutation p.E5930D 0.14 probably_damaging(0.937) TCGA-86-8073-01 6 152651629 152651629 C T SYNE1 Missense_Mutation p.D4731N 0.13 benign(0.003) TCGA-86-8073-01 6 152763291 152763291 T A SYNE1 Silent p.R1309R 0.18 TCGA-86-8073-01 6 152777081 152777081 T C SYNE1 Silent p.L889L 0.20 TCGA-86-8073-01 6 153077290 153077290 T A VIP Silent p.P119P 0.04 TCGA-86-8073-01 6 154751653 154751653 A G CNKSR3 Missense_Mutation p.C208R 0.27 tolerated(0.39) benign(0.18) TCGA-86-8073-01 6 155154240 155154241 - T SCAF8 Frame_Shift_Ins p.R1177Sfs*21 0.18 TCGA-86-8073-01 6 157469856 157469856 G T ARID1B Nonsense_Mutation p.G884* 0.16 TCGA-86-8073-01 6 160219184 160219184 A G MRPL18 3'UTR 0.12 TCGA-86-8073-01 6 161155042 161155042 G A PLG Missense_Mutation p.D535N 0.19 deleterious(0) probably_damaging(0.973) TCGA-86-8073-01 6 163956052 163956052 A G QKI Silent p.L147L 0.12 TCGA-86-8073-01 6 165749654 165749654 G A PDE10A Missense_Mutation p.T742I 0.19 tolerated(0.2) benign(0.19) TCGA-86-8073-01 6 165756954 165756954 G T PDE10A Missense_Mutation p.L675I 0.25 deleterious(0.04) probably_damaging(0.98) TCGA-86-8073-01 6 168352761 168352761 G A MLLT4 Missense_Mutation p.R1569K 0.17 deleterious_low_confidence(0.03) probably_damaging(0.995) TCGA-86-8073-01 6 169648766 169648766 C A THBS2 Missense_Mutation p.G119C 0.17 deleterious(0) probably_damaging(1) TCGA-86-8073-01 6 18463605 18463605 A T RNF144B Silent p.R255R 0.15 TCGA-86-8073-01 6 24843530 24843530 G C FAM65B Missense_Mutation p.Q494E 0.17 tolerated(1) benign(0.039) TCGA-86-8073-01 6 26056124 26056124 T A HIST1H1C Missense_Mutation p.K178M 0.13 deleterious(0) unknown(0) TCGA-86-8073-01 6 26124875 26124875 C A HIST1H2AC Intron 0.31 TCGA-86-8073-01 6 26197074 26197074 C A HIST1H3D Missense_Mutation p.R135S 0.11 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-86-8073-01 6 26200000 26200000 G T HIST1H2BF Nonsense_Mutation p.E72* 0.17 TCGA-86-8073-01 6 26217562 26217562 G T HIST1H2AE Missense_Mutation p.K120N 0.11 deleterious_low_confidence(0) benign(0.323) TCGA-86-8073-01 6 28472224 28472224 A C GPX6 Missense_Mutation p.W171G 0.13 deleterious(0) probably_damaging(0.997) TCGA-86-8073-01 6 29640744 29640744 T C ZFP57 Missense_Mutation p.N382D 0.13 tolerated(0.08) benign(0.002) TCGA-86-8073-01 6 30080255 30080255 C T TRIM31 Missense_Mutation p.G110R 0.19 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 6 3012880 3012880 T G NQO2 Missense_Mutation p.V92G 0.16 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 6 31543676 31543676 T C TNF Missense_Mutation p.F53S 0.17 deleterious(0) possibly_damaging(0.888) TCGA-86-8073-01 6 31922387 31922387 T G NELFE Missense_Mutation p.E229D 0.18 tolerated_low_confidence(0.72) unknown(0) TCGA-86-8073-01 6 32165250 32165250 G T NOTCH4 Silent p.P1626P 0.13 TCGA-86-8073-01 6 33135085 33135085 C T COL11A2 Missense_Mutation p.G1292S 0.20 unknown(0) TCGA-86-8073-01 6 3324052 3324052 T A SLC22A23 Intron 0.26 TCGA-86-8073-01 6 33650360 33650360 G A ITPR3 Silent p.P1512P 0.17 TCGA-86-8073-01 6 34498311 34498311 G T PACSIN1 Silent p.L328L 0.10 TCGA-86-8073-01 6 37606040 37606040 A G MDGA1 Missense_Mutation p.I906T 0.13 deleterious(0) probably_damaging(0.991) TCGA-86-8073-01 6 37611712 37611712 G A MDGA1 Silent p.Y803Y 0.16 TCGA-86-8073-01 6 39033979 39033979 C A GLP1R Missense_Mutation p.P137T 0.19 tolerated(0.32) benign(0.146) TCGA-86-8073-01 6 39046125 39046125 G A GLP1R Nonsense_Mutation p.W284* 0.11 TCGA-86-8073-01 6 39046943 39046943 C A GLP1R Missense_Mutation p.A337D 0.11 deleterious(0) possibly_damaging(0.688) TCGA-86-8073-01 6 39046944 39046944 C A GLP1R Silent p.A337A 0.11 TCGA-86-8073-01 6 40400492 40400492 G T LRFN2 Silent p.R121R 0.16 TCGA-86-8073-01 6 40400546 40400546 G T LRFN2 Missense_Mutation p.R103S 0.19 deleterious(0) probably_damaging(0.989) TCGA-86-8073-01 6 41184896 41184896 C A TREML3P RNA 0.22 TCGA-86-8073-01 6 42883815 42883815 G T PTCRA Missense_Mutation p.G3V 0.12 tolerated_low_confidence(0.07) unknown(0) TCGA-86-8073-01 6 43251380 43251380 G T TTBK1 Missense_Mutation p.G968W 0.12 possibly_damaging(0.793) TCGA-86-8073-01 6 44250144 44250144 G A TCTE1 Silent p.H333H 0.13 TCGA-86-8073-01 6 46659310 46659310 A T TDRD6 Missense_Mutation p.S1149C 0.32 deleterious(0) benign(0.353) TCGA-86-8073-01 6 46806903 46806903 C A MEP1A 3'UTR 0.20 TCGA-86-8073-01 6 49753638 49753638 C A PGK2 3'UTR 0.11 TCGA-86-8073-01 6 50683253 50683253 G A TFAP2D Missense_Mutation p.G155E 0.12 deleterious(0) probably_damaging(0.972) TCGA-86-8073-01 6 50791342 50791342 C A TFAP2B Missense_Mutation p.Q102K 0.07 deleterious(0.04) benign(0.057) TCGA-86-8073-01 6 52617683 52617683 G A GSTA2 Missense_Mutation p.T128I 0.03 tolerated(0.06) benign(0.015) TCGA-86-8073-01 6 53409418 53409418 G T GCLC Missense_Mutation p.P9Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 6 55142371 55142371 C A HCRTR2 Missense_Mutation p.P319Q 0.16 deleterious(0) probably_damaging(1) TCGA-86-8073-01 6 56471502 56471502 C G DST Intron 0.17 TCGA-86-8073-01 6 56483243 56483243 G T DST Intron 0.19 TCGA-86-8073-01 6 57372297 57372297 A T PRIM2 Missense_Mutation p.R235W 0.07 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 6 69349203 69349203 G A BAI3 Silent p.L212L 0.27 TCGA-86-8073-01 6 69640555 69640555 C A BAI3 Missense_Mutation p.Q288K 0.07 deleterious(0.01) benign(0.014) TCGA-86-8073-01 6 69703691 69703691 T C BAI3 Missense_Mutation p.M589T 0.12 tolerated(0.37) benign(0.003) TCGA-86-8073-01 6 70037783 70037783 T A BAI3 Splice_Site p.X1012_splice 0.08 TCGA-86-8073-01 6 71012702 71012702 C A COL9A1 5'UTR 0.09 TCGA-86-8073-01 6 71235579 71235579 C G FAM135A Missense_Mutation p.S931C 0.12 deleterious(0.05) benign(0.019) TCGA-86-8073-01 6 7565712 7565712 G T DSP Missense_Mutation p.D300Y 0.14 probably_damaging(1) TCGA-86-8073-01 6 7575625 7575625 A C DSP Missense_Mutation p.Q845P 0.20 benign(0.258) TCGA-86-8073-01 6 7584584 7584584 C A DSP Missense_Mutation p.H2363Q 0.20 probably_damaging(0.986) TCGA-86-8073-01 6 75885000 75885000 C A COL12A1 Missense_Mutation p.V822F 0.12 probably_damaging(0.999) TCGA-86-8073-01 6 78172236 78172236 G T HTR1B Silent p.S295S 0.16 TCGA-86-8073-01 6 83732261 83732261 C A UBE3D Missense_Mutation p.V253L 0.14 deleterious(0.02) benign(0.171) TCGA-86-8073-01 6 86203733 86203733 T A NT5E 3'UTR 0.14 TCGA-86-8073-01 6 86251735 86251735 T C SNX14 Silent p.A472A 0.24 TCGA-86-8073-01 6 86251754 86251754 C T SNX14 Missense_Mutation p.R466K 0.14 tolerated(0.22) benign(0.029) TCGA-86-8073-01 6 89967431 89967431 G C GABRR2 Silent p.S452S 0.16 TCGA-86-8073-01 6 97247458 97247458 G A GPR63 Silent p.T50T 0.18 TCGA-86-8073-01 6 99365503 99365503 G T FBXL4 Missense_Mutation p.T202K 0.17 deleterious(0) possibly_damaging(0.543) TCGA-86-8073-01 6 99828163 99828163 C A COQ3 Missense_Mutation p.E96D 0.07 tolerated(0.08) possibly_damaging(0.817) TCGA-86-8073-01 7 100087053 100087053 G T NYAP1 Missense_Mutation p.G570V 0.16 deleterious(0) probably_damaging(0.931) TCGA-86-8073-01 7 100212489 100212489 G T MOSPD3 Splice_Site p.X171_splice 0.21 TCGA-86-8073-01 7 100345256 100345256 C G ZAN Missense_Mutation p.R339G 0.13 possibly_damaging(0.552) TCGA-86-8073-01 7 100350292 100350292 A T ZAN Missense_Mutation p.E855V 0.07 unknown(0) TCGA-86-8073-01 7 100421305 100421305 C A EPHB4 Silent p.T124T 0.16 TCGA-86-8073-01 7 100855930 100855930 G T PLOD3 Missense_Mutation p.P296T 0.29 deleterious(0) probably_damaging(0.979) TCGA-86-8073-01 7 100888249 100888249 C G FIS1 Missense_Mutation p.D13H 0.08 deleterious(0) probably_damaging(0.987) TCGA-86-8073-01 7 103126781 103126781 G A RELN Silent p.N3282N 0.16 TCGA-86-8073-01 7 103338337 103338337 G T RELN Missense_Mutation p.T369K 0.29 deleterious(0.04) probably_damaging(0.991) TCGA-86-8073-01 7 107626512 107626512 C T LAMB1 Missense_Mutation p.D211N 0.12 deleterious(0) probably_damaging(0.995) TCGA-86-8073-01 7 107824999 107824999 C T NRCAM Missense_Mutation p.E699K 0.19 tolerated(0.43) benign(0.004) TCGA-86-8073-01 7 113518146 113518146 C G PPP1R3A Missense_Mutation p.E1001Q 0.24 deleterious(0.01) probably_damaging(0.965) TCGA-86-8073-01 7 113519927 113519927 T A PPP1R3A Missense_Mutation p.E407V 0.17 deleterious(0.01) possibly_damaging(0.649) TCGA-86-8073-01 7 11452297 11452297 T A THSD7A Missense_Mutation p.D1223V 0.13 tolerated(0.24) benign(0.044) TCGA-86-8073-01 7 116411686 116411686 G A MET Silent p.L973L 0.14 TCGA-86-8073-01 7 123332402 123332402 G T WASL Missense_Mutation p.S449Y 0.26 deleterious(0.02) probably_damaging(0.991) TCGA-86-8073-01 7 123594254 123594254 T A SPAM1 Silent p.L210L 0.35 TCGA-86-8073-01 7 126079195 126079195 C A GRM8 Missense_Mutation p.S902I 0.17 deleterious_low_confidence(0) benign(0.403) TCGA-86-8073-01 7 127894866 127894866 C A LEP 3'UTR 0.13 TCGA-86-8073-01 7 127964620 127964620 C A RBM28 Missense_Mutation p.R444L 0.25 deleterious(0) probably_damaging(0.998) TCGA-86-8073-01 7 128446838 128446838 G T CCDC136 Nonsense_Mutation p.E449* 0.23 TCGA-86-8073-01 7 128490468 128490468 C A FLNC Missense_Mutation p.P1777T 0.08 tolerated(0.61) benign(0.003) TCGA-86-8073-01 7 132192367 132192367 C A PLXNA4 Missense_Mutation p.Q362H 0.27 tolerated(0.1) benign(0.014) TCGA-86-8073-01 7 134133802 134133802 C G AKR1B1 Missense_Mutation p.V167L 0.09 tolerated(0.43) benign(0.003) TCGA-86-8073-01 7 135095329 135095329 G A CNOT4 Nonsense_Mutation p.Q253* 0.09 TCGA-86-8073-01 7 135307653 135307653 G A NUP205 Missense_Mutation p.D1487N 0.25 deleterious(0.03) probably_damaging(0.995) TCGA-86-8073-01 7 135406254 135406254 G A SLC13A4 Silent p.Y39Y 0.20 TCGA-86-8073-01 7 140221666 140221666 T A DENND2A Missense_Mutation p.Q967L 0.10 tolerated(0.21) probably_damaging(0.954) TCGA-86-8073-01 7 140223139 140223139 T A DENND2A Missense_Mutation p.E878V 0.21 deleterious(0.01) possibly_damaging(0.724) TCGA-86-8073-01 7 142139775 142139775 G T TRBV7-6 5'UTR 0.27 TCGA-86-8073-01 7 142162402 142162402 G T TRBV6-6 5'UTR 0.23 TCGA-86-8073-01 7 14217668 14217668 C A DGKB Missense_Mutation p.C745F 0.14 deleterious(0) benign(0.027) TCGA-86-8073-01 7 142223846 142223846 G A TRBV11-1 Silent p.A107A 0.03 TCGA-86-8073-01 7 142326880 142326880 C A TRBV19 Missense_Mutation p.Q60K 0.14 tolerated(0.33) benign(0.031) TCGA-86-8073-01 7 142448561 142448561 A T TRBV29-1 Missense_Mutation p.Q52L 0.22 deleterious(0) probably_damaging(1) TCGA-86-8073-01 7 142459770 142459770 C A PRSS1 Missense_Mutation p.R116S 0.27 deleterious(0.04) benign(0.005) TCGA-86-8073-01 7 142499018 142499018 C A TRBC2 Missense_Mutation p.Q99K 0.11 tolerated(0.12) benign(0.216) TCGA-86-8073-01 7 142575695 142575695 C A TRPV6 Missense_Mutation p.K71N 0.12 tolerated(0.23) benign(0) TCGA-86-8073-01 7 142622830 142622830 G A TRPV5 Nonsense_Mutation p.Q306* 0.07 TCGA-86-8073-01 7 143027918 143027918 T A CLCN1 Missense_Mutation p.W303R 0.31 deleterious(0) probably_damaging(1) TCGA-86-8073-01 7 143036388 143036388 G A CLCN1 Missense_Mutation p.G482R 0.19 deleterious(0) probably_damaging(1) TCGA-86-8073-01 7 143632882 143632882 G T OR2F2 Missense_Mutation p.R186M 0.19 deleterious(0.01) probably_damaging(0.99) TCGA-86-8073-01 7 144150629 144150629 G A TPK1 3'UTR 0.27 TCGA-86-8073-01 7 147869567 147869567 A G CNTNAP2 Missense_Mutation p.K1003E 0.12 tolerated(0.26) benign(0.045) TCGA-86-8073-01 7 148876113 148876113 G T ZNF398 Silent p.A383A 0.20 TCGA-86-8073-01 7 148947615 148947615 G T ZNF212 Silent p.P130P 0.10 TCGA-86-8073-01 7 149153028 149153028 C A ZNF777 Missense_Mutation p.R29L 0.25 deleterious_low_confidence(0.01) benign(0.059) TCGA-86-8073-01 7 149519190 149519190 G T SSPO RNA 0.28 TCGA-86-8073-01 7 149523555 149523555 G T SSPO RNA 0.17 TCGA-86-8073-01 7 150217518 150217518 C A GIMAP7 Silent p.G152G 0.16 TCGA-86-8073-01 7 150439872 150439872 G - GIMAP5 Frame_Shift_Del p.G216Afs*45 0.20 TCGA-86-8073-01 7 150647357 150647357 C A KCNH2 Missense_Mutation p.G766V 0.11 deleterious(0) probably_damaging(1) TCGA-86-8073-01 7 150648845 150648845 C A KCNH2 Missense_Mutation p.G546C 0.28 deleterious(0) probably_damaging(1) TCGA-86-8073-01 7 150846032 150846032 C T GBX1 Missense_Mutation p.E246K 0.16 deleterious(0.04) benign(0.023) TCGA-86-8073-01 7 150873378 150873378 G T ASB10 Missense_Mutation p.Q409K 0.20 tolerated(0.52) benign(0.007) TCGA-86-8073-01 7 151891314 151891314 C A KMT2C Nonsense_Mutation p.E1514* 0.16 TCGA-86-8073-01 7 151932993 151932993 T A KMT2C Missense_Mutation p.K893M 0.20 probably_damaging(0.999) TCGA-86-8073-01 7 153584781 153584781 G T DPP6 Missense_Mutation p.A5S 0.19 tolerated(0.37) benign(0.002) TCGA-86-8073-01 7 154585810 154585810 G A DPP6 Silent p.V386V 0.13 TCGA-86-8073-01 7 154585861 154585861 G A DPP6 Silent p.Q403Q 0.10 TCGA-86-8073-01 7 154585909 154585909 G A DPP6 Silent p.T419T 0.11 TCGA-86-8073-01 7 154862857 154862857 C A HTR5A-AS1 Missense_Mutation p.A53S 0.06 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-86-8073-01 7 154862858 154862858 C A HTR5A-AS1 Silent p.T52T 0.06 TCGA-86-8073-01 7 155538085 155538085 A C RBM33 Missense_Mutation p.Q923P 0.13 tolerated(0.39) unknown(0) TCGA-86-8073-01 7 158468308 158468308 C A NCAPG2 Missense_Mutation p.G396V 0.22 deleterious(0) probably_damaging(0.998) TCGA-86-8073-01 7 158715089 158715089 A C WDR60 Missense_Mutation p.H648P 0.07 deleterious(0.01) benign(0.193) TCGA-86-8073-01 7 158715095 158715095 C G WDR60 Missense_Mutation p.S650C 0.06 tolerated(0.05) possibly_damaging(0.869) TCGA-86-8073-01 7 18687451 18687451 C T HDAC9 Missense_Mutation p.T360M 0.12 deleterious(0.02) benign(0.012) TCGA-86-8073-01 7 18914119 18914119 G C HDAC9 Silent p.V901V 0.26 TCGA-86-8073-01 7 20826489 20826489 G C SP8 5'UTR 0.24 TCGA-86-8073-01 7 21641072 21641072 A T DNAH11 Missense_Mutation p.N1162Y 0.07 benign(0.091) TCGA-86-8073-01 7 2608633 2608633 A T IQCE Nonsense_Mutation p.K44* 0.10 TCGA-86-8073-01 7 27135178 27135178 G T HOXA1 Missense_Mutation p.D118E 0.04 tolerated(0.36) benign(0.011) TCGA-86-8073-01 7 27141898 27141898 C T HOXA2 Silent p.K74K 0.33 TCGA-86-8073-01 7 27237969 27237969 G A HOXA13 Missense_Mutation p.R339W 0.04 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 7 2946434 2946434 G T CARD11 Silent p.R1101R 0.12 TCGA-86-8073-01 7 30868293 30868293 A T FAM188B Splice_Site p.X358_splice 0.06 TCGA-86-8073-01 7 31125001 31125001 A T ADCYAP1R1 Missense_Mutation p.I205F 0.14 deleterious(0) probably_damaging(0.998) TCGA-86-8073-01 7 31617613 31617613 C T CCDC129 Silent p.A271A 0.12 TCGA-86-8073-01 7 31683167 31683167 C G CCDC129 Missense_Mutation p.T754S 0.04 tolerated(0.15) possibly_damaging(0.625) TCGA-86-8073-01 7 34192935 34192935 A T BMPER 3'UTR 0.17 TCGA-86-8073-01 7 34698051 34698051 C T NPSR1 Silent p.S9S 0.13 TCGA-86-8073-01 7 38402618 38402618 G T TRGV2 Nonsense_Mutation p.Y67* 0.05 TCGA-86-8073-01 7 39247215 39247215 A G POU6F2 Silent p.L169L 0.23 TCGA-86-8073-01 7 4153753 4153753 G T SDK1 Missense_Mutation p.A1224S 0.10 tolerated(0.41) benign(0.009) TCGA-86-8073-01 7 4153772 4153772 G T SDK1 Missense_Mutation p.S1230I 0.13 tolerated(0.1) benign(0.012) TCGA-86-8073-01 7 44150655 44150655 C A AEBP1 Silent p.A543A 0.07 TCGA-86-8073-01 7 44151897 44151897 C A AEBP1 Missense_Mutation p.R732S 0.17 tolerated(0.41) benign(0.18) TCGA-86-8073-01 7 44802527 44802527 G T ZMIZ2 Silent p.S548S 0.21 TCGA-86-8073-01 7 45632425 45632425 A T ADCY1 Missense_Mutation p.E236V 0.14 deleterious(0) probably_damaging(0.949) TCGA-86-8073-01 7 45701749 45701749 G T ADCY1 Missense_Mutation p.C514F 0.10 deleterious(0) possibly_damaging(0.775) TCGA-86-8073-01 7 48314243 48314243 G C ABCA13 Missense_Mutation p.L1660F 0.14 benign(0.055) TCGA-86-8073-01 7 50468225 50468225 G T IKZF1 Missense_Mutation p.R445L 0.19 deleterious(0) probably_damaging(0.998) TCGA-86-8073-01 7 50799978 50799978 C G GRB10 Silent p.P14P 0.23 TCGA-86-8073-01 7 51097172 51097172 C A COBL Missense_Mutation p.V541L 0.17 deleterious(0.02) possibly_damaging(0.635) TCGA-86-8073-01 7 53103574 53103574 C G POM121L12 Silent p.R70R 0.08 TCGA-86-8073-01 7 55990947 55990947 G C MRPS17 Silent p.V47V 0.20 TCGA-86-8073-01 7 56007708 56007708 G T ZNF713 3'UTR 0.11 TCGA-86-8073-01 7 6026957 6026957 C A PMS2 Missense_Mutation p.G480V 0.15 tolerated(0.65) benign(0.003) TCGA-86-8073-01 7 6026958 6026958 C A PMS2 Nonsense_Mutation p.G480* 0.16 TCGA-86-8073-01 7 62753191 62753191 G T ZNF733P RNA 0.25 TCGA-86-8073-01 7 64452169 64452169 C A ERV3-1 Missense_Mutation p.Q412H 0.13 tolerated(0.15) possibly_damaging(0.722) TCGA-86-8073-01 7 6731119 6731119 C A ZNF12 Missense_Mutation p.R485I 0.18 tolerated(0.18) probably_damaging(1) TCGA-86-8073-01 7 75185396 75185396 C A HIP1 Missense_Mutation p.R587S 0.20 tolerated(0.19) benign(0.004) TCGA-86-8073-01 7 75221706 75221706 C A HIP1 Missense_Mutation p.R104L 0.15 deleterious(0.01) probably_damaging(0.952) TCGA-86-8073-01 7 75625760 75625760 T A STYXL1 3'UTR 0.18 TCGA-86-8073-01 7 75894698 75894698 C A SRRM3 Missense_Mutation p.P248T 0.16 deleterious(0.05) unknown(0) TCGA-86-8073-01 7 76112402 76112402 C G DTX2 Silent p.S282S 0.21 TCGA-86-8073-01 7 7612140 7612140 C A MIOS Missense_Mutation p.P12T 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-86-8073-01 7 77797364 77797364 C G MAGI2 Missense_Mutation p.G822A 0.26 tolerated(0.2) probably_damaging(1) TCGA-86-8073-01 7 8099726 8099726 G T GLCCI1 Missense_Mutation p.A272S 0.15 tolerated(0.17) possibly_damaging(0.57) TCGA-86-8073-01 7 81336652 81336652 T A HGF Missense_Mutation p.I524L 0.22 deleterious(0.05) possibly_damaging(0.631) TCGA-86-8073-01 7 82585778 82585778 A G PCLO Silent p.S1497S 0.30 TCGA-86-8073-01 7 82586091 82586091 T C PCLO Missense_Mutation p.K1393R 0.09 unknown(0) TCGA-86-8073-01 7 86479847 86479847 C T GRM3 Silent p.T851T 0.13 TCGA-86-8073-01 7 86493604 86493604 C A GRM3 Missense_Mutation p.A858E 0.16 deleterious(0) benign(0.266) TCGA-86-8073-01 7 86539316 86539316 C A KIAA1324L Missense_Mutation p.G724V 0.21 deleterious(0.01) possibly_damaging(0.523) TCGA-86-8073-01 7 86548585 86548585 C A KIAA1324L Missense_Mutation p.G481C 0.31 tolerated(0.07) possibly_damaging(0.749) TCGA-86-8073-01 7 87133572 87133572 G T ABCB1 Missense_Mutation p.T1277K 0.20 tolerated_low_confidence(0.4) benign(0.003) TCGA-86-8073-01 7 88965209 88965209 C A ZNF804B Silent p.G971G 0.29 TCGA-86-8073-01 7 93101724 93101724 T C CALCR Missense_Mutation p.Y149C 0.04 deleterious(0) probably_damaging(1) TCGA-86-8073-01 7 95442597 95442597 A C DYNC1I1 Missense_Mutation p.T105P 0.19 deleterious(0.03) benign(0.02) TCGA-86-8073-01 7 95822453 95822453 C - SLC25A13 Frame_Shift_Del p.D171Tfs*25 0.16 TCGA-86-8073-01 7 98449162 98449162 G T TMEM130 Missense_Mutation p.S296R 0.31 tolerated(0.18) benign(0.012) TCGA-86-8073-01 7 99569538 99569538 G T AZGP1 Silent p.L56L 0.09 TCGA-86-8073-01 7 99764195 99764195 C T GAL3ST4 Missense_Mutation p.R120H 0.24 tolerated(0.51) benign(0.007) TCGA-86-8073-01 7 99818586 99818586 C A PVRIG Silent p.V231V 0.15 TCGA-86-8073-01 7 99818587 99818587 C A PVRIG Missense_Mutation p.P232T 0.15 deleterious(0.05) probably_damaging(0.991) TCGA-86-8073-01 8 101051212 101051212 G T RGS22 Missense_Mutation p.Q705K 0.13 tolerated(0.07) probably_damaging(0.999) TCGA-86-8073-01 8 104240276 104240276 C A BAALC Missense_Mutation p.S129R 0.20 deleterious(0) possibly_damaging(0.55) TCGA-86-8073-01 8 10465092 10465092 C A RP1L1 Missense_Mutation p.E2172D 0.19 unknown(0) TCGA-86-8073-01 8 104928673 104928673 A T RIMS2 Silent p.L648L 0.10 TCGA-86-8073-01 8 105509551 105509551 C A LRP12 Missense_Mutation p.C410F 0.09 deleterious(0) probably_damaging(0.997) TCGA-86-8073-01 8 110131276 110131276 G T TRHR Splice_Site p.X264_splice 0.11 TCGA-86-8073-01 8 110477105 110477105 G A PKHD1L1 Missense_Mutation p.G2682R 0.24 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 8 110477106 110477106 G T PKHD1L1 Missense_Mutation p.G2682V 0.23 deleterious(0) probably_damaging(1) TCGA-86-8073-01 8 113420546 113420546 C - CSMD3 Splice_Site p.X1869_splice 0.14 TCGA-86-8073-01 8 113871424 113871424 C T CSMD3 Missense_Mutation p.D569N 0.05 deleterious(0.03) benign(0.358) TCGA-86-8073-01 8 120580446 120580446 G T ENPP2 Silent p.T752T 0.13 TCGA-86-8073-01 8 120807828 120807828 C A TAF2 Nonsense_Mutation p.G379* 0.07 TCGA-86-8073-01 8 121224770 121224770 G C COL14A1 Missense_Mutation p.M517I 0.13 tolerated(0.37) probably_damaging(0.992) TCGA-86-8073-01 8 124054342 124054342 C A DERL1 Missense_Mutation p.W7C 0.11 tolerated(0.06) benign(0.027) TCGA-86-8073-01 8 124664146 124664146 C A KLHL38 Missense_Mutation p.A341S 0.14 tolerated(0.59) benign(0.002) TCGA-86-8073-01 8 124797354 124797354 G T FAM91A1 Missense_Mutation p.V282F 0.05 deleterious(0) probably_damaging(0.995) TCGA-86-8073-01 8 124799928 124799928 A G FAM91A1 Missense_Mutation p.M406V 0.22 deleterious(0) possibly_damaging(0.885) TCGA-86-8073-01 8 125076754 125076754 G T FER1L6 Silent p.P1165P 0.10 TCGA-86-8073-01 8 125113575 125113575 C A FER1L6 Missense_Mutation p.F1707L 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-86-8073-01 8 125988850 125988850 G A ZNF572 Missense_Mutation p.G114R 0.09 tolerated(0.1) benign(0.011) TCGA-86-8073-01 8 133053399 133053399 A T OC90 Missense_Mutation p.C117S 0.05 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 8 133764149 133764149 T C TMEM71 Missense_Mutation p.R66G 0.12 deleterious(0) probably_damaging(1) TCGA-86-8073-01 8 133764150 133764150 G T TMEM71 Silent p.P65P 0.12 TCGA-86-8073-01 8 133898781 133898781 G - TG Frame_Shift_Del p.F389Sfs*13 0.10 TCGA-86-8073-01 8 134108551 134108551 A T TG Silent p.V2502V 0.17 TCGA-86-8073-01 8 136561090 136561090 G A KHDRBS3 Missense_Mutation p.A140T 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-86-8073-01 8 139609207 139609207 A T COL22A1 Missense_Mutation p.S1458T 0.11 unknown(0) TCGA-86-8073-01 8 139728491 139728491 C A COL22A1 Silent p.V814V 0.25 TCGA-86-8073-01 8 139737664 139737664 C T COL22A1 Missense_Mutation p.G720D 0.13 unknown(0) TCGA-86-8073-01 8 141567222 141567222 C A AGO2 Missense_Mutation p.G331V 0.14 deleterious(0) probably_damaging(1) TCGA-86-8073-01 8 143395757 143395757 C A TSNARE1 Missense_Mutation p.R373S 0.25 deleterious(0.04) benign(0.231) TCGA-86-8073-01 8 143395758 143395758 C A TSNARE1 Missense_Mutation p.R373M 0.24 deleterious(0.01) possibly_damaging(0.847) TCGA-86-8073-01 8 143833908 143833908 G T LYPD2 5'UTR 0.27 TCGA-86-8073-01 8 144620310 144620310 T G ZC3H3 Silent p.P409P 0.09 TCGA-86-8073-01 8 144809040 144809040 T C FAM83H Missense_Mutation p.H864R 0.09 tolerated_low_confidence(0.3) benign(0.024) TCGA-86-8073-01 8 145003677 145003677 G A PLEC Silent p.L1133L 0.12 TCGA-86-8073-01 8 145557220 145557220 G T SCRT1 Missense_Mutation p.P225Q 0.36 deleterious(0) unknown(0) TCGA-86-8073-01 8 146279589 146279589 G T C8orf33 3'UTR 0.20 TCGA-86-8073-01 8 146279590 146279590 G A C8orf33 3'UTR 0.19 TCGA-86-8073-01 8 1574943 1574943 G T DLGAP2 Nonsense_Mutation p.G414* 0.25 TCGA-86-8073-01 8 16032708 16032708 C A MSR1 Nonsense_Mutation p.G69* 0.17 TCGA-86-8073-01 8 16032810 16032810 C G MSR1 Splice_Site p.X35_splice 0.18 TCGA-86-8073-01 8 17918902 17918902 G C ASAH1 Missense_Mutation p.L273V 0.12 deleterious(0.02) possibly_damaging(0.749) TCGA-86-8073-01 8 18080316 18080316 G A NAT1 Missense_Mutation p.E316K 0.10 tolerated(0.11) benign(0.06) TCGA-86-8073-01 8 20036725 20036725 A T SLC18A1 Nonsense_Mutation p.L132* 0.14 TCGA-86-8073-01 8 2017481 2017481 G T MYOM2 Silent p.V246V 0.24 TCGA-86-8073-01 8 2024228 2024228 C A MYOM2 Missense_Mutation p.D376E 0.19 tolerated(0.23) benign(0.023) TCGA-86-8073-01 8 2056585 2056585 C A MYOM2 Missense_Mutation p.R1003S 0.16 deleterious(0) possibly_damaging(0.829) TCGA-86-8073-01 8 21996183 21996183 C A REEP4 Missense_Mutation p.R226L 0.17 deleterious(0.03) possibly_damaging(0.842) TCGA-86-8073-01 8 22005823 22005823 T C LGI3 Silent p.R499R 0.11 TCGA-86-8073-01 8 22212881 22212881 C A PIWIL2 Missense_Mutation p.H929N 0.14 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 8 24256408 24256408 C A ADAMDEC1 Missense_Mutation p.Q262K 0.09 tolerated(0.1) benign(0.009) TCGA-86-8073-01 8 25159840 25159840 G T DOCK5 Splice_Site p.X283_splice 0.14 TCGA-86-8073-01 8 27303405 27303405 G T PTK2B Missense_Mutation p.R770L 0.17 tolerated(0.26) benign(0.218) TCGA-86-8073-01 8 28956656 28956656 C G KIF13B Missense_Mutation p.D1440H 0.24 deleterious(0.03) possibly_damaging(0.779) TCGA-86-8073-01 8 29120525 29120525 C A KIF13B Silent p.A9A 0.14 TCGA-86-8073-01 8 30560722 30560722 G A GSR Silent p.F176F 0.17 TCGA-86-8073-01 8 30701766 30701766 G T TEX15 Missense_Mutation p.L1590I 0.14 tolerated(0.23) benign(0.005) TCGA-86-8073-01 8 30703552 30703552 G T TEX15 Silent p.S994S 0.14 TCGA-86-8073-01 8 3432576 3432576 C A CSMD1 Missense_Mutation p.G412V 0.20 probably_damaging(1) TCGA-86-8073-01 8 35544206 35544206 A T UNC5D Missense_Mutation p.T355S 0.33 tolerated(0.09) possibly_damaging(0.809) TCGA-86-8073-01 8 36766936 36766936 G T KCNU1 Missense_Mutation p.L738F 0.21 deleterious(0) probably_damaging(0.995) TCGA-86-8073-01 8 38091960 38091960 A C DDHD2 Missense_Mutation p.D90A 0.27 deleterious(0) probably_damaging(1) TCGA-86-8073-01 8 38258379 38258379 A T LETM2 Silent p.T217T 0.15 TCGA-86-8073-01 8 38677234 38677234 G T TACC1 Missense_Mutation p.D158Y 0.17 deleterious(0.02) benign(0.058) TCGA-86-8073-01 8 39486944 39486944 G T ADAM18 Missense_Mutation p.V192L 0.15 tolerated(0.16) benign(0.301) TCGA-86-8073-01 8 41530217 41530217 G C ANK1 Missense_Mutation p.S1625C 0.14 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-86-8073-01 8 41655052 41655052 G T ANK1 Intron 0.18 TCGA-86-8073-01 8 4494938 4494938 G T CSMD1 Silent p.T76T 0.14 TCGA-86-8073-01 8 51306793 51306793 C A SNTG1 5'UTR 0.12 TCGA-86-8073-01 8 51314891 51314891 C A SNTG1 Missense_Mutation p.P50H 0.08 tolerated(0.23) benign(0.017) TCGA-86-8073-01 8 51664666 51664666 G A SNTG1 Missense_Mutation p.A464T 0.17 tolerated(1) benign(0.003) TCGA-86-8073-01 8 52258427 52258427 C G PXDNL Missense_Mutation p.D1328H 0.20 deleterious(0.01) possibly_damaging(0.491) TCGA-86-8073-01 8 52320934 52320934 C A PXDNL Missense_Mutation p.A1084S 0.11 deleterious(0) probably_damaging(0.989) TCGA-86-8073-01 8 52773423 52773423 T C PCMTD1 Missense_Mutation p.M97V 0.15 tolerated(0.19) benign(0.041) TCGA-86-8073-01 8 53028944 53028944 T A ST18 Missense_Mutation p.E965V 0.14 deleterious(0) probably_damaging(0.946) TCGA-86-8073-01 8 67971598 67971598 C A COPS5 Nonsense_Mutation p.E76* 0.12 TCGA-86-8073-01 8 68989669 68989669 G T PREX2 Missense_Mutation p.G536V 0.09 deleterious(0) possibly_damaging(0.713) TCGA-86-8073-01 8 70667789 70667789 G T SLCO5A1 Missense_Mutation p.H376Q 0.16 tolerated(0.21) benign(0.014) TCGA-86-8073-01 8 77766876 77766876 G T ZFHX4 Silent p.T2573T 0.26 TCGA-86-8073-01 8 85686827 85686827 A T RALYL Silent p.A103A 0.23 TCGA-86-8073-01 8 87076730 87076730 C T PSKH2 Missense_Mutation p.V106M 0.11 tolerated(0.09) possibly_damaging(0.652) TCGA-86-8073-01 8 8749296 8749296 G A MFHAS1 Silent p.L425L 0.17 TCGA-86-8073-01 8 87683233 87683233 G A CNGB3 Silent p.A144A 0.03 TCGA-86-8073-01 8 87917312 87917312 G C CNBD1 Silent p.R54R 0.14 TCGA-86-8073-01 8 87951936 87951936 A T CNBD1 Nonsense_Mutation p.R129* 0.21 TCGA-86-8073-01 8 90798839 90798839 C A RIPK2 Missense_Mutation p.Q350K 0.13 tolerated(0.51) benign(0.028) TCGA-86-8073-01 8 93023240 93023240 G A RUNX1T1 Missense_Mutation p.P194L 0.10 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 8 94748439 94748439 G A RBM12B Missense_Mutation p.S67L 0.12 deleterious(0) probably_damaging(0.997) TCGA-86-8073-01 8 95178027 95178027 G T CDH17 Missense_Mutation p.T415N 0.31 tolerated(0.15) benign(0.008) TCGA-86-8073-01 8 97316404 97316404 T C PTDSS1 Missense_Mutation p.W297R 0.10 deleterious(0) probably_damaging(0.997) TCGA-86-8073-01 8 97316405 97316405 G T PTDSS1 Missense_Mutation p.W297L 0.10 deleterious(0.01) probably_damaging(0.958) TCGA-86-8073-01 8 99440678 99440678 C T KCNS2 Silent p.D157D 0.11 TCGA-86-8073-01 9 100616405 100616405 C A FOXE1 Missense_Mutation p.P70H 0.19 deleterious(0) probably_damaging(0.995) TCGA-86-8073-01 9 101546371 101546371 C A ANKS6 Missense_Mutation p.G326W 0.10 deleterious(0) probably_damaging(1) TCGA-86-8073-01 9 101825334 101825334 A T COL15A1 Silent p.P1198P 0.09 TCGA-86-8073-01 9 102861092 102861092 C A ERP44 Missense_Mutation p.D11Y 0.14 deleterious(0.01) benign(0.067) TCGA-86-8073-01 9 103204623 103204623 G - MSANTD3 Frame_Shift_Del p.D135Tfs*43 0.14 TCGA-86-8073-01 9 104160869 104160869 C A MRPL50 Silent p.A2A 0.24 TCGA-86-8073-01 9 107380297 107380297 C A OR13C9 Silent p.L63L 0.12 TCGA-86-8073-01 9 111625398 111625398 C A ACTL7A Missense_Mutation p.Q266K 0.14 tolerated(0.38) benign(0.001) TCGA-86-8073-01 9 112705441 112705441 G T PALM2 Missense_Mutation p.E324D 0.11 tolerated(0.54) benign(0.034) TCGA-86-8073-01 9 113173941 113173941 A T SVEP1 Missense_Mutation p.L2017Q 0.25 probably_damaging(0.954) TCGA-86-8073-01 9 114289935 114289935 C A ZNF483 Missense_Mutation p.T87K 0.11 deleterious(0) possibly_damaging(0.832) TCGA-86-8073-01 9 116930159 116930159 G T COL27A1 Silent p.R108R 0.13 TCGA-86-8073-01 9 116930380 116930380 T C COL27A1 Missense_Mutation p.L182P 0.06 unknown(0) TCGA-86-8073-01 9 120466807 120466807 C A TLR4 Silent p.S19S 0.21 TCGA-86-8073-01 9 123215988 123215988 C A CDK5RAP2 Missense_Mutation p.D847Y 0.15 deleterious(0.04) probably_damaging(0.953) TCGA-86-8073-01 9 123667292 123667292 C A TRAF1 3'UTR 0.17 TCGA-86-8073-01 9 124094768 124094768 G T GSN Missense_Mutation p.V746L 0.17 tolerated(0.68) benign(0.003) TCGA-86-8073-01 9 124906529 124906529 C A NDUFA8 Missense_Mutation p.W170C 0.14 deleterious(0) probably_damaging(0.982) TCGA-86-8073-01 9 124962247 124962247 C G MORN5 3'UTR 0.17 TCGA-86-8073-01 9 124988657 124988657 G T LHX6 Missense_Mutation p.F153L 0.10 tolerated(0.07) benign(0.269) TCGA-86-8073-01 9 125240059 125240059 G A OR1J1 Silent p.I49I 0.17 TCGA-86-8073-01 9 126777630 126777630 G T LHX2 Missense_Mutation p.D185Y 0.10 deleterious(0.03) possibly_damaging(0.693) TCGA-86-8073-01 9 130075789 130075789 A G GARNL3 Missense_Mutation p.Q130R 0.23 tolerated(0.47) benign(0.216) TCGA-86-8073-01 9 131117963 131117963 C T SLC27A4 Silent p.A554A 0.09 TCGA-86-8073-01 9 131347026 131347026 C G SPTAN1 Missense_Mutation p.L822V 0.12 deleterious(0.02) probably_damaging(0.994) TCGA-86-8073-01 9 131721172 131721172 G T NUP188 Missense_Mutation p.R155M 0.10 tolerated(0.11) benign(0.043) TCGA-86-8073-01 9 132483045 132483045 C A PRRX2 Silent p.S206S 0.19 TCGA-86-8073-01 9 133960987 133960987 C A LAMC3 Silent p.L1369L 0.11 TCGA-86-8073-01 9 134025774 134025774 G T NUP214 Missense_Mutation p.V702L 0.17 benign(0.024) TCGA-86-8073-01 9 135147098 135147098 C A SETX Nonsense_Mutation p.G2400* 0.21 TCGA-86-8073-01 9 135554779 135554779 C T GTF3C4 Silent p.T591T 0.15 TCGA-86-8073-01 9 136200575 136200575 C T SURF6 Silent p.K124K 0.17 TCGA-86-8073-01 9 136253251 136253251 C A C9orf96 Nonsense_Mutation p.C105* 0.13 TCGA-86-8073-01 9 136501519 136501519 G T DBH Missense_Mutation p.S9I 0.19 tolerated_low_confidence(0.05) benign(0.054) TCGA-86-8073-01 9 137734063 137734063 C - COL5A1 Frame_Shift_Del p.I1812Sfs*55 0.16 TCGA-86-8073-01 9 138651660 138651660 G T KCNT1 Silent p.L330L 0.09 TCGA-86-8073-01 9 138660719 138660719 C A KCNT1 Silent p.A482A 0.15 TCGA-86-8073-01 9 138660720 138660720 C T KCNT1 Missense_Mutation p.P483S 0.14 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 9 138830161 138830161 C A UBAC1 Missense_Mutation p.D337Y 0.25 deleterious(0) probably_damaging(0.961) TCGA-86-8073-01 9 139266352 139266352 T A CARD9 Missense_Mutation p.K60I 0.20 deleterious(0) probably_damaging(0.998) TCGA-86-8073-01 9 139371508 139371508 C A SEC16A Missense_Mutation p.S187I 0.18 deleterious(0) possibly_damaging(0.563) TCGA-86-8073-01 9 140708894 140708894 C T EHMT1 Silent p.C1064C 0.15 TCGA-86-8073-01 9 141010081 141010081 G C CACNA1B Silent p.R1909R 0.13 TCGA-86-8073-01 9 15721846 15721846 G T CCDC171 Missense_Mutation p.Q466H 0.21 tolerated(0.07) probably_damaging(0.999) TCGA-86-8073-01 9 16436330 16436330 T A BNC2 Missense_Mutation p.H621L 0.14 tolerated(0.19) benign(0.002) TCGA-86-8073-01 9 17135215 17135215 A G CNTLN Missense_Mutation p.D51G 0.37 tolerated_low_confidence(0.23) benign(0.019) TCGA-86-8073-01 9 17395056 17395056 G T CNTLN Silent p.V868V 0.19 TCGA-86-8073-01 9 18829950 18829950 G T ADAMTSL1 Silent p.L1408L 0.16 TCGA-86-8073-01 9 22451454 22451454 A T DMRTA1 Missense_Mutation p.K353N 0.09 deleterious(0.03) probably_damaging(0.917) TCGA-86-8073-01 9 27950380 27950380 T A LINGO2 Missense_Mutation p.E97V 0.19 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 9 33923972 33923972 C - UBAP2 Frame_Shift_Del p.D873Tfs*30 0.21 TCGA-86-8073-01 9 35547328 35547328 C A RUSC2 Missense_Mutation p.S270R 0.13 deleterious(0) probably_damaging(0.996) TCGA-86-8073-01 9 35870058 35870058 A T OR13J1 Missense_Mutation p.L114Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 9 36170263 36170263 G T CCIN Missense_Mutation p.S255I 0.14 tolerated(0.15) benign(0.223) TCGA-86-8073-01 9 5968569 5968569 C A KIAA2026 Missense_Mutation p.L554F 0.29 tolerated(0.26) benign(0.003) TCGA-86-8073-01 9 65506634 65506634 G T SPATA31A7 Missense_Mutation p.T309N 0.27 tolerated(0.13) probably_damaging(0.983) TCGA-86-8073-01 9 72131966 72131966 C A APBA1 Missense_Mutation p.G54V 0.19 deleterious_low_confidence(0) benign(0.024) TCGA-86-8073-01 9 72131967 72131967 C A APBA1 Missense_Mutation p.G54W 0.19 deleterious_low_confidence(0) possibly_damaging(0.461) TCGA-86-8073-01 9 72520885 72520885 G A C9orf135 Missense_Mutation p.D175N 0.10 tolerated(0.09) benign(0.26) TCGA-86-8073-01 9 74764569 74764569 C A GDA Missense_Mutation p.H32N 0.15 tolerated(0.26) benign(0.377) TCGA-86-8073-01 9 77354699 77354699 C A TRPM6 Missense_Mutation p.E1809D 0.12 deleterious(0.01) possibly_damaging(0.632) TCGA-86-8073-01 9 79118407 79118407 G T GCNT1 Silent p.P370P 0.11 TCGA-86-8073-01 9 8331618 8331618 T C PTPRD Missense_Mutation p.Q1833R 0.09 deleterious(0) probably_damaging(0.95) TCGA-86-8073-01 9 8389344 8389344 T C PTPRD Missense_Mutation p.Y1425C 0.21 deleterious(0) probably_damaging(1) TCGA-86-8073-01 9 84607511 84607511 C T SPATA31D1 Missense_Mutation p.S709F 0.22 deleterious(0.03) probably_damaging(0.96) TCGA-86-8073-01 9 90497974 90497974 G A SPATA31E1 Nonsense_Mutation p.W56* 0.18 TCGA-86-8073-01 9 95993280 95993280 G A WNK2 Missense_Mutation p.R322Q 0.27 unknown(0) TCGA-86-8073-01 9 96070746 96070746 G T WNK2 Missense_Mutation p.W2169C 0.11 unknown(0) TCGA-86-8073-01 9 96408012 96408012 G T PHF2 Missense_Mutation p.G134V 0.12 deleterious(0) unknown(0) TCGA-86-8073-01 9 96408013 96408013 G T PHF2 Silent p.G134G 0.12 TCGA-86-8073-01 9 96428303 96428303 G C PHF2 Silent p.T716T 0.12 TCGA-86-8073-01 9 97062949 97062949 G T ZNF169 Missense_Mutation p.G370V 0.18 deleterious(0) probably_damaging(0.973) TCGA-86-8073-01 9 98229584 98229584 C A PTCH1 Missense_Mutation p.A792S 0.08 tolerated(1) benign(0.017) TCGA-86-8073-01 9 99694204 99694204 C A NUTM2G Missense_Mutation p.P73T 0.22 deleterious(0.01) possibly_damaging(0.646) TCGA-86-8073-01 9 99799627 99799627 C - CTSV Frame_Shift_Del p.K102Rfs*25 0.10 TCGA-86-8073-01 X 100911242 100911242 T C ARMCX2 Missense_Mutation p.K445E 0.42 deleterious(0.03) probably_damaging(0.992) TCGA-86-8073-01 X 101912304 101912304 G C GPRASP1 Missense_Mutation p.E1155Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 X 102528919 102528919 C A TCEAL5 Missense_Mutation p.R191S 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-86-8073-01 X 103045559 103045559 G A PLP1 3'UTR 0.29 TCGA-86-8073-01 X 10535315 10535315 C A MID1 Silent p.V91V 0.40 TCGA-86-8073-01 X 11312895 11312895 A G AMELX Splice_Site 0.23 TCGA-86-8073-01 X 117959822 117959822 G A ZCCHC12 Silent p.R205R 0.28 TCGA-86-8073-01 X 125686015 125686015 G T DCAF12L1 Missense_Mutation p.H193N 0.31 deleterious(0) probably_damaging(1) TCGA-86-8073-01 X 125686109 125686109 C A DCAF12L1 Missense_Mutation p.K161N 0.07 deleterious(0.01) possibly_damaging(0.883) TCGA-86-8073-01 X 127185589 127185589 G C ACTRT1 Missense_Mutation p.S199R 0.26 tolerated(1) probably_damaging(0.96) TCGA-86-8073-01 X 129053162 129053162 C G UTP14A Silent p.P183P 0.27 TCGA-86-8073-01 X 132351529 132351529 G A TFDP3 Silent p.H253H 0.37 TCGA-86-8073-01 X 134421212 134421212 G T ZNF75D Missense_Mutation p.L464I 0.29 deleterious(0) probably_damaging(0.994) TCGA-86-8073-01 X 136649486 136649486 C A ZIC3 Silent p.A212A 0.20 TCGA-86-8073-01 X 140336542 140336542 C A SPANXC Nonsense_Mutation p.E17* 0.28 TCGA-86-8073-01 X 146318475 146318475 G T MIR508 RNA 0.30 TCGA-86-8073-01 X 151996338 151996338 C A CETN2 3'UTR 0.36 TCGA-86-8073-01 X 152018833 152018833 G T NSDHL Missense_Mutation p.G45C 0.35 deleterious(0) probably_damaging(1) TCGA-86-8073-01 X 152036208 152036208 G T NSDHL Silent p.L260L 0.25 TCGA-86-8073-01 X 153035271 153035271 G T PLXNB3 Silent p.R525R 0.33 TCGA-86-8073-01 X 153678570 153678570 A T FAM50A Missense_Mutation p.K305M 0.29 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 X 153688974 153688974 A G PLXNA3 Missense_Mutation p.M151V 0.42 tolerated(0.34) probably_damaging(0.992) TCGA-86-8073-01 X 153941577 153941577 T C GAB3 Silent p.V167V 0.25 TCGA-86-8073-01 X 1755423 1755423 C T ASMT Silent p.L294L 0.15 TCGA-86-8073-01 X 17819710 17819710 G T RAI2 Missense_Mutation p.P141T 0.29 deleterious(0.01) probably_damaging(0.994) TCGA-86-8073-01 X 19002050 19002050 T A PHKA2 Translation_Start_Site p.M1? 0.10 deleterious(0.02) benign(0.033) TCGA-86-8073-01 X 2161187 2161187 C G DHRSX Silent p.A227A 0.10 TCGA-86-8073-01 X 22065311 22065311 G T PHEX Missense_Mutation p.V111F 0.33 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 X 3238890 3238890 G T MXRA5 Silent p.P1612P 0.39 TCGA-86-8073-01 X 3241627 3241627 C A MXRA5 Missense_Mutation p.G700V 0.46 deleterious(0) probably_damaging(0.999) TCGA-86-8073-01 X 3544474 3544474 C A PRKX Missense_Mutation p.L267F 0.32 tolerated(1) benign(0.192) TCGA-86-8073-01 X 37027960 37027960 A C FAM47C Missense_Mutation p.T493P 0.33 tolerated_low_confidence(0.07) probably_damaging(0.994) TCGA-86-8073-01 X 37655391 37655391 C A CYBB Missense_Mutation p.A224D 0.21 tolerated(0.21) benign(0.066) TCGA-86-8073-01 X 37663304 37663304 G T CYBB Missense_Mutation p.V358F 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-86-8073-01 X 37969615 37969615 G T SYTL5 Missense_Mutation p.Q514H 0.34 deleterious(0) probably_damaging(0.988) TCGA-86-8073-01 X 44949026 44949026 A G KDM6A Missense_Mutation p.N1196S 0.40 tolerated(0.45) possibly_damaging(0.74) TCGA-86-8073-01 X 47062073 47062073 G T UBA1 Missense_Mutation p.V365L 0.42 tolerated(1) benign(0.001) TCGA-86-8073-01 X 50053080 50053080 G T CCNB3 Missense_Mutation p.Q637H 0.36 tolerated(0.13) benign(0.06) TCGA-86-8073-01 X 50053081 50053081 G T CCNB3 Nonsense_Mutation p.E638* 0.36 TCGA-86-8073-01 X 53560975 53560975 G T HUWE1 Missense_Mutation p.H4339N 0.29 unknown(0) TCGA-86-8073-01 X 53644371 53644371 G A HUWE1 Missense_Mutation p.P570L 0.44 probably_damaging(0.997) TCGA-86-8073-01 X 63406010 63406010 C A AMER1 3'UTR 0.36 TCGA-86-8073-01 X 68383138 68383138 C T PJA1 5'UTR 0.29 TCGA-86-8073-01 X 73065132 73065132 G T XIST RNA 0.35 TCGA-86-8073-01 X 76907720 76907720 G T ATRX Silent p.R1481R 0.26 TCGA-86-8073-01 X 79698950 79698950 A G FAM46D Silent p.G304G 0.29 TCGA-86-8073-01 X 83581204 83581204 A T HDX Missense_Mutation p.D643E 0.07 tolerated(0.1) benign(0.001) TCGA-86-8073-01 X 84363344 84363344 G T SATL1 Missense_Mutation p.P211T 0.45 tolerated(0.26) possibly_damaging(0.803) TCGA-86-8073-01 X 86880703 86880703 G T KLHL4 Nonsense_Mutation p.E411* 0.38 TCGA-86-8073-01 X 91090887 91090887 G T PCDH11X Silent p.L128L 0.52 TCGA-86-8073-01 X 91132641 91132641 C A PCDH11X Missense_Mutation p.Q468K 0.21 tolerated(0.06) benign(0.345) TCGA-86-8073-01 X 91137956 91137956 T A PCDH11X Intron 0.54 TCGA-86-8073-01 X 99956953 99956953 C A SYTL4 Missense_Mutation p.E27D 0.30 tolerated(0.38) probably_damaging(0.99) TCGA-86-8073-01 Y 4966382 4966382 G C PCDH11Y Missense_Mutation p.D255H 0.41 deleterious(0) probably_damaging(1) TCGA-86-8074-01 10 121691675 121691675 C G SEC23IP Missense_Mutation p.S868C 0.13 deleterious(0.02) probably_damaging(0.923) TCGA-86-8074-01 10 134161561 134161561 G A LRRC27 Silent p.A209A 0.30 TCGA-86-8074-01 11 44959810 44959810 T C TP53I11 Missense_Mutation p.K26R 0.18 deleterious(0) probably_damaging(0.998) TCGA-86-8074-01 11 58190560 58190560 A C OR5B2 Missense_Mutation p.F59V 0.20 deleterious_low_confidence(0.01) benign(0.027) TCGA-86-8074-01 12 114803908 114803908 C G TBX5 Intron 0.19 TCGA-86-8074-01 12 117768586 117768586 G A NOS1 Silent p.L97L 0.39 TCGA-86-8074-01 12 9760420 9760420 T C KLRB1 Missense_Mutation p.I6V 0.09 tolerated(1) benign(0.001) TCGA-86-8074-01 13 48919226 48919229 TTCT - RB1 Frame_Shift_Del p.F131Lfs*4 0.67 TCGA-86-8074-01 14 24569244 24569244 G T PCK2 Silent p.G352G 0.05 TCGA-86-8074-01 14 45624599 45624599 T G FANCM Missense_Mutation p.Y445D 0.22 deleterious(0) benign(0.212) TCGA-86-8074-01 14 71209067 71209067 C A MAP3K9 Splice_Site p.X523_splice 0.23 TCGA-86-8074-01 15 22332593 22332594 - T RP11-69H14.6 RNA 0.18 TCGA-86-8074-01 15 84651937 84651937 C T ADAMTSL3 Missense_Mutation p.P1186L 0.14 tolerated(0.18) benign(0.017) TCGA-86-8074-01 16 69184598 69184598 G A CIRH1A Silent p.A299A 0.16 TCGA-86-8074-01 17 2966283 2966283 A C OR1D5 Missense_Mutation p.F207V 0.15 tolerated(0.67) probably_damaging(1) TCGA-86-8074-01 17 41139391 41139391 A G RUNDC1 Missense_Mutation p.Y206C 0.21 tolerated(0.13) possibly_damaging(0.664) TCGA-86-8074-01 17 686377 686377 C T RNMTL1 Silent p.I123I 0.10 TCGA-86-8074-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.64 deleterious(0) probably_damaging(1) TCGA-86-8074-01 17 7695291 7695291 C T DNAH2 Silent p.F2319F 0.22 TCGA-86-8074-01 17 7726790 7726790 C A DNAH2 Missense_Mutation p.P3725T 0.55 probably_damaging(0.998) TCGA-86-8074-01 17 80012838 80012838 C T GPS1 Missense_Mutation p.P265L 0.23 tolerated(0.07) benign(0.099) TCGA-86-8074-01 18 12680707 12680707 C T CEP76 Missense_Mutation p.G415R 0.41 deleterious(0.01) possibly_damaging(0.668) TCGA-86-8074-01 18 30903498 30903498 C T CCDC178 Missense_Mutation p.D327N 0.18 tolerated(0.11) possibly_damaging(0.466) TCGA-86-8074-01 18 32843477 32843478 CT - ZSCAN30 Frame_Shift_Del p.D185Wfs*17 0.23 TCGA-86-8074-01 19 35760495 35760495 C G USF2 Missense_Mutation p.P41A 0.67 tolerated(0.63) benign(0.001) TCGA-86-8074-01 19 41128356 41128356 G T LTBP4 Missense_Mutation p.A1156S 0.30 tolerated(0.32) benign(0.271) TCGA-86-8074-01 19 47725097 47725097 G A BBC3 Missense_Mutation p.T216I 0.22 deleterious_low_confidence(0) benign(0.261) TCGA-86-8074-01 1 152283414 152283414 T C FLG Silent p.R1316R 0.34 TCGA-86-8074-01 1 156697421 156697421 C G ISG20L2 Silent p.L8L 0.39 TCGA-86-8074-01 1 156812204 156812204 G A INSRR Missense_Mutation p.R1075W 0.20 deleterious(0) probably_damaging(1) TCGA-86-8074-01 1 160389273 160389273 C T VANGL2 Missense_Mutation p.A225V 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-86-8074-01 1 166039888 166039888 C A FAM78B Missense_Mutation p.G126C 0.41 deleterious(0) probably_damaging(0.971) TCGA-86-8074-01 1 169699661 169699661 G T SELE Missense_Mutation p.S209R 0.17 tolerated(0.08) benign(0.151) TCGA-86-8074-01 1 192627355 192627355 A G RGS13 Missense_Mutation p.Y51C 0.38 deleterious(0) probably_damaging(0.973) TCGA-86-8074-01 1 207739269 207739272 GTGA - CR1 Splice_Site p.X1318_splice 0.14 TCGA-86-8074-01 1 237948062 237948062 G A RYR2 Silent p.E4350E 0.12 TCGA-86-8074-01 1 52499103 52499103 C T KTI12 Missense_Mutation p.G111S 0.16 tolerated_low_confidence(0.3) benign(0.015) TCGA-86-8074-01 20 23064923 23064923 T C CD93 Missense_Mutation p.E636G 0.14 deleterious(0.04) probably_damaging(1) TCGA-86-8074-01 20 37536565 37536565 G A PPP1R16B Missense_Mutation p.A339T 0.12 tolerated(0.46) benign(0.037) TCGA-86-8074-01 20 45133262 45133262 C T ZNF334 Missense_Mutation p.V47I 0.14 tolerated(0.31) benign(0.001) TCGA-86-8074-01 20 62340055 62340055 G A ZGPAT Silent p.G41G 0.22 TCGA-86-8074-01 20 62340076 62340076 G A ZGPAT Silent p.E48E 0.26 TCGA-86-8074-01 2 107040257 107040257 T C RGPD3 Missense_Mutation p.D1389G 0.40 deleterious(0.05) possibly_damaging(0.673) TCGA-86-8074-01 2 111399326 111399326 T A BUB1 Nonsense_Mutation p.R840* 0.21 TCGA-86-8074-01 2 149225967 149225967 C G MBD5 Missense_Mutation p.S152C 0.38 tolerated(0.07) possibly_damaging(0.843) TCGA-86-8074-01 2 21233221 21233221 T G APOB Missense_Mutation p.Q2173H 0.17 probably_damaging(0.993) TCGA-86-8074-01 2 29386745 29386745 G T CLIP4 Missense_Mutation p.G528V 0.48 deleterious(0) probably_damaging(1) TCGA-86-8074-01 2 54014321 54014321 G T ERLEC1 5'UTR 0.29 TCGA-86-8074-01 2 88387495 88387495 G A SMYD1 Silent p.E143E 0.06 TCGA-86-8074-01 3 134873005 134873005 G A EPHB1 Missense_Mutation p.V437I 0.37 tolerated(0.18) benign(0.376) TCGA-86-8074-01 3 134977882 134977882 G T EPHB1 Missense_Mutation p.A959S 0.36 tolerated(0.06) probably_damaging(0.967) TCGA-86-8074-01 3 180377314 180377314 C A CCDC39 Nonsense_Mutation p.E222* 0.47 TCGA-86-8074-01 3 186760573 186760573 G A ST6GAL1 Missense_Mutation p.E28K 0.42 probably_damaging(0.982) TCGA-86-8074-01 3 35780974 35780974 G T ARPP21 Nonsense_Mutation p.G605* 0.45 TCGA-86-8074-01 3 38835389 38835389 C A SCN10A Missense_Mutation p.R38I 0.32 deleterious(0.02) benign(0.042) TCGA-86-8074-01 4 73013371 73013371 A G NPFFR2 Missense_Mutation p.S471G 0.17 tolerated(0.66) benign(0.002) TCGA-86-8074-01 5 140581456 140581456 C G PCDHB11 Missense_Mutation p.F703L 0.12 tolerated_low_confidence(0.47) benign(0.003) TCGA-86-8074-01 5 176825247 176825247 G A SLC34A1 Missense_Mutation p.R627H 0.16 tolerated_low_confidence(0.12) benign(0.001) TCGA-86-8074-01 5 39376765 39376765 C T DAB2 Silent p.L708L 0.09 TCGA-86-8074-01 5 68491555 68491555 A T CENPH Missense_Mutation p.D84V 0.39 tolerated(0.06) possibly_damaging(0.779) TCGA-86-8074-01 6 138601149 138601149 A G KIAA1244 Missense_Mutation p.K770R 0.36 tolerated(0.64) benign(0.001) TCGA-86-8074-01 6 26217383 26217383 G C HIST1H2AE Missense_Mutation p.A61P 0.20 deleterious_low_confidence(0) benign(0.052) TCGA-86-8074-01 6 36870061 36870061 T C C6orf89 Missense_Mutation p.L92S 0.30 tolerated(0.5) probably_damaging(0.999) TCGA-86-8074-01 7 18788726 18788726 C T HDAC9 Nonsense_Mutation p.R670* 0.14 TCGA-86-8074-01 7 44259720 44259720 C A CAMK2B Missense_Mutation p.G648C 0.45 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-86-8074-01 7 55242465 55242479 GGAATTAAGAGAAGC - EGFR In_Frame_Del p.E746_A750del 0.11 TCGA-86-8074-01 7 82997013 82997013 C T SEMA3E Silent p.R739R 0.15 TCGA-86-8074-01 8 113293441 113293441 G A CSMD3 Missense_Mutation p.A3157V 0.08 tolerated(0.79) possibly_damaging(0.595) TCGA-86-8074-01 8 113988160 113988160 A G CSMD3 Silent p.S416S 0.12 TCGA-86-8074-01 8 114111023 114111023 A C CSMD3 Missense_Mutation p.D293E 0.17 deleterious(0) possibly_damaging(0.644) TCGA-86-8074-01 8 124824765 124824765 G C FAM91A1 Missense_Mutation p.A780P 0.38 tolerated(0.33) benign(0.001) TCGA-86-8074-01 8 132002640 132002640 T G ADCY8 Missense_Mutation p.Q370P 0.15 deleterious(0) possibly_damaging(0.601) TCGA-86-8074-01 8 2050502 2050502 G T MYOM2 Missense_Mutation p.A889S 0.43 deleterious(0.04) possibly_damaging(0.903) TCGA-86-8074-01 8 55538646 55538646 A T RP1 Missense_Mutation p.D735V 0.19 deleterious(0) benign(0.28) TCGA-86-8074-01 9 113496656 113496656 G T MUSK Splice_Site p.X251_splice 0.04 TCGA-86-8074-01 9 135771795 135771795 C G TSC1 Missense_Mutation p.G1108R 0.49 tolerated(0.06) possibly_damaging(0.551) TCGA-86-8074-01 9 136501721 136501721 C A DBH Silent p.L76L 0.35 TCGA-86-8074-01 9 140107026 140107026 G A NDOR1 Missense_Mutation p.G96S 0.27 deleterious(0.01) probably_damaging(0.957) TCGA-86-8074-01 X 107838765 107838765 T G COL4A5 Missense_Mutation p.C484G 0.10 unknown(0) TCGA-86-8074-01 X 107840675 107840675 T G COL4A5 Silent p.T552T 0.11 TCGA-86-8074-01 X 133674538 133674538 C A MIR450A2 RNA 0.09 TCGA-86-8074-01 X 153716613 153716613 G A SLC10A3 Missense_Mutation p.P223S 0.14 deleterious(0) probably_damaging(1) TCGA-86-8074-01 X 17744124 17744124 A C NHS Missense_Mutation p.N612T 0.08 deleterious(0.04) probably_damaging(0.998) TCGA-86-8074-01 X 34148549 34148549 C G FAM47A Missense_Mutation p.G616A 0.11 tolerated(0.16) benign(0.007) TCGA-86-8075-01 10 108412209 108412209 T A SORCS1 Silent p.I802I 0.10 TCGA-86-8075-01 10 13522908 13522908 C A BEND7 Missense_Mutation p.A300S 0.09 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-86-8075-01 11 117774675 117774675 T C TMPRSS13 Missense_Mutation p.Q508R 0.33 deleterious(0) probably_damaging(0.996) TCGA-86-8075-01 11 51515710 51515710 G T OR4C46 Missense_Mutation p.M143I 0.10 tolerated_low_confidence(0.08) benign(0.002) TCGA-86-8075-01 11 66637825 66637825 T C PC Missense_Mutation p.D284G 0.31 tolerated(0.11) possibly_damaging(0.61) TCGA-86-8075-01 11 66637828 66637828 A G PC Missense_Mutation p.L283P 0.30 deleterious(0) probably_damaging(0.996) TCGA-86-8075-01 11 8751568 8751568 G A ST5 Silent p.P423P 0.09 TCGA-86-8075-01 12 118610379 118610379 A T TAOK3 Silent p.A594A 0.04 TCGA-86-8075-01 12 5154893 5154893 C T KCNA5 Missense_Mutation p.T527M 0.21 deleterious(0.04) probably_damaging(0.999) TCGA-86-8075-01 14 21052296 21052296 G A RNASE11 Missense_Mutation p.S113L 0.26 deleterious(0) probably_damaging(0.964) TCGA-86-8075-01 14 21547143 21547143 C T ARHGEF40 Missense_Mutation p.R783W 0.10 deleterious(0.03) possibly_damaging(0.871) TCGA-86-8075-01 14 22740419 22740419 C T TRAV38-1 Missense_Mutation p.A108V 0.12 deleterious(0.01) possibly_damaging(0.876) TCGA-86-8075-01 15 22958262 22958262 G A CYFIP1 Silent p.R635R 0.13 TCGA-86-8075-01 15 25602039 25602039 C T UBE3A Missense_Mutation p.M589I 0.10 deleterious(0) probably_damaging(0.996) TCGA-86-8075-01 15 27777805 27777805 C T GABRG3 Silent p.S394S 0.14 TCGA-86-8075-01 15 41861142 41861142 G A TYRO3 Missense_Mutation p.V392I 0.34 tolerated(0.67) benign(0.006) TCGA-86-8075-01 15 72143660 72143660 G A MYO9A Missense_Mutation p.S2172F 0.33 deleterious(0) probably_damaging(1) TCGA-86-8075-01 15 75182413 75182413 G A MPI 5'UTR 0.13 TCGA-86-8075-01 16 2233719 2233719 C T CASKIN1 Silent p.P519P 0.10 TCGA-86-8075-01 16 23672568 23672568 G A DCTN5 Missense_Mutation p.G105D 0.18 deleterious(0) probably_damaging(0.976) TCGA-86-8075-01 16 69375589 69375589 G C NIP7 3'UTR 0.09 TCGA-86-8075-01 16 80718918 80718918 G A CDYL2 Missense_Mutation p.L45F 0.10 deleterious(0.01) benign(0.269) TCGA-86-8075-01 17 17209911 17209911 C T NT5M Silent p.L108L 0.09 TCGA-86-8075-01 17 18155411 18155411 G C FLII Missense_Mutation p.A383G 0.26 tolerated(0.29) benign(0.028) TCGA-86-8075-01 17 46607102 46607102 G A HOXB1 Missense_Mutation p.A238V 0.08 deleterious(0) probably_damaging(0.998) TCGA-86-8075-01 17 46988226 46988226 C T UBE2Z Missense_Mutation p.T125I 0.07 tolerated(0.17) benign(0.381) TCGA-86-8075-01 17 7578556 7578556 T C TP53 Splice_Site p.X126_splice 0.40 TCGA-86-8075-01 19 35173711 35173711 C G ZNF302 Missense_Mutation p.F13L 0.13 deleterious(0) probably_damaging(0.994) TCGA-86-8075-01 19 50978613 50978613 C T FAM71E1 Missense_Mutation p.A154T 0.32 tolerated(0.14) benign(0.028) TCGA-86-8075-01 1 101203869 101203869 C T VCAM1 3'UTR 0.26 TCGA-86-8075-01 1 101203873 101203873 T A VCAM1 3'UTR 0.16 TCGA-86-8075-01 1 115828996 115828996 C T NGF Missense_Mutation p.V141M 0.26 tolerated(0.51) benign(0.057) TCGA-86-8075-01 1 159923408 159923408 C T SLAMF9 Missense_Mutation p.E28K 0.06 tolerated(0.18) benign(0.313) TCGA-86-8075-01 1 230822799 230822799 C T COG2 Missense_Mutation p.S500L 0.11 deleterious(0.04) benign(0.126) TCGA-86-8075-01 20 45355558 45355558 C T SLC2A10 Silent p.F448F 0.47 TCGA-86-8075-01 21 40574334 40574335 - T BRWD1 Frame_Shift_Ins p.T1501Nfs*4 0.12 TCGA-86-8075-01 22 50658074 50658074 C T TUBGCP6 Missense_Mutation p.M1438I 0.07 deleterious(0.01) probably_damaging(0.965) TCGA-86-8075-01 2 18113728 18113728 T A KCNS3 Missense_Mutation p.L485M 0.07 tolerated(0.12) benign(0.006) TCGA-86-8075-01 2 201342774 201342774 G A SPATS2L 3'UTR 0.28 TCGA-86-8075-01 2 20197005 20197005 G T MATN3 Missense_Mutation p.A395D 0.31 deleterious(0.02) benign(0.282) TCGA-86-8075-01 2 203072040 203072040 C - SUMO1 Frame_Shift_Del p.G81Efs*7 0.15 TCGA-86-8075-01 2 20871168 20871168 G A GDF7 Missense_Mutation p.A446T 0.50 tolerated(0.22) probably_damaging(0.989) TCGA-86-8075-01 2 220396515 220396515 C T ASIC4 Silent p.N333N 0.26 TCGA-86-8075-01 2 230902171 230902171 G A SLC16A14 Silent p.L486L 0.46 TCGA-86-8075-01 2 238234246 238234246 G T COL6A3 Missense_Mutation p.N3150K 0.16 unknown(0) TCGA-86-8075-01 2 48027676 48027678 AAG - MSH6 In_Frame_Del p.K854del 0.17 TCGA-86-8075-01 2 70031721 70031721 C G ANXA4 Missense_Mutation p.Q52E 0.12 deleterious(0) possibly_damaging(0.804) TCGA-86-8075-01 3 52526377 52526377 G - NISCH Frame_Shift_Del p.R1465Lfs*99 0.32 TCGA-86-8075-01 4 120419812 120419812 C G PDE5A Missense_Mutation p.E858Q 0.30 tolerated(0.17) benign(0.17) TCGA-86-8075-01 4 96127880 96127880 G A UNC5C Missense_Mutation p.L601F 0.17 tolerated(0.05) probably_damaging(0.947) TCGA-86-8075-01 5 57754590 57754590 C G PLK2 Missense_Mutation p.E153Q 0.14 deleterious(0.02) possibly_damaging(0.843) TCGA-86-8075-01 6 114378530 114378530 C T HS3ST5 Missense_Mutation p.R311H 0.12 deleterious(0) probably_damaging(0.997) TCGA-86-8075-01 6 116560165 116560165 T - NT5DC1 Frame_Shift_Del p.F379Lfs*74 0.10 TCGA-86-8075-01 6 129786365 129786365 G A LAMA2 Missense_Mutation p.V2411I 0.17 tolerated(0.1) benign(0.02) TCGA-86-8075-01 6 30522368 30522368 G C GNL1 Missense_Mutation p.T195S 0.14 deleterious(0.01) possibly_damaging(0.546) TCGA-86-8075-01 7 149191094 149191094 G A ZNF746 Missense_Mutation p.T131M 0.19 deleterious(0.03) benign(0.095) TCGA-86-8075-01 7 20766691 20766691 G A ABCB5 Missense_Mutation p.R885H 0.36 deleterious(0.02) benign(0.235) TCGA-86-8075-01 7 2578938 2578938 G C BRAT1 Missense_Mutation p.L549V 0.44 deleterious(0) probably_damaging(0.942) TCGA-86-8075-01 7 55259515 55259515 T G EGFR Missense_Mutation p.L858R 0.43 deleterious(0) probably_damaging(1) TCGA-86-8075-01 8 100654692 100654692 G A VPS13B Silent p.V1983V 0.53 TCGA-86-8075-01 8 57127185 57127185 A G CHCHD7 Missense_Mutation p.T30A 0.46 tolerated(0.54) benign(0.004) TCGA-86-8075-01 9 21216753 21216753 T G IFNA16 Silent p.G184G 0.19 TCGA-86-8075-01 9 33470187 33470187 G T NOL6 Silent p.L127L 0.24 TCGA-86-8075-01 9 34971471 34971471 A G KIAA1045 Missense_Mutation p.K59R 0.12 tolerated_low_confidence(0.14) benign(0.008) TCGA-86-8075-01 9 37708411 37708411 G A FRMPD1 Missense_Mutation p.G92D 0.13 deleterious(0) probably_damaging(0.997) TCGA-86-8075-01 X 118786864 118786864 A T SEPT6 Missense_Mutation p.S161T 0.07 deleterious(0.01) probably_damaging(0.994) TCGA-86-8075-01 X 153175377 153175377 G A ARHGAP4 Silent p.D784D 0.17 TCGA-86-8076-01 10 37430735 37430735 G T ANKRD30A Missense_Mutation p.D248Y 0.13 deleterious(0.01) probably_damaging(0.926) TCGA-86-8076-01 10 97397180 97397180 T C ALDH18A1 Missense_Mutation p.Q106R 0.10 tolerated(0.18) benign(0.046) TCGA-86-8076-01 11 46897021 46897021 C G LRP4 Missense_Mutation p.R1304P 0.07 tolerated(0.2) benign(0.005) TCGA-86-8076-01 11 58482800 58482800 G A GLYAT Missense_Mutation p.P60S 0.12 deleterious(0.02) probably_damaging(0.986) TCGA-86-8076-01 11 75319192 75319192 G A MAP6 Missense_Mutation p.R361C 0.08 deleterious(0) probably_damaging(0.997) TCGA-86-8076-01 12 133732425 133732425 A T ZNF10 Missense_Mutation p.D198V 0.05 deleterious(0) benign(0.051) TCGA-86-8076-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.11 deleterious(0) benign(0.361) TCGA-86-8076-01 12 44132173 44132173 G C PUS7L Missense_Mutation p.L462V 0.24 deleterious(0.02) probably_damaging(0.911) TCGA-86-8076-01 13 25479993 25479993 C G CENPJ Missense_Mutation p.R728T 0.14 deleterious(0.02) benign(0.022) TCGA-86-8076-01 14 45646167 45646167 C T FANCM Missense_Mutation p.H1404Y 0.12 tolerated(0.29) benign(0.002) TCGA-86-8076-01 15 41188228 41188228 G A VPS18 Missense_Mutation p.V62I 0.11 tolerated(0.29) benign(0.426) TCGA-86-8076-01 15 52446250 52446250 C G GNB5 Missense_Mutation p.E88Q 0.11 deleterious(0.03) benign(0.196) TCGA-86-8076-01 15 65703463 65703463 C T IGDCC4 Missense_Mutation p.E106K 0.11 tolerated(0.46) benign(0.005) TCGA-86-8076-01 15 69003098 69003098 G A CORO2B Missense_Mutation p.G121R 0.11 deleterious(0) probably_damaging(0.999) TCGA-86-8076-01 15 77425859 77425859 C T PEAK1 Missense_Mutation p.D1189N 0.12 deleterious(0.04) probably_damaging(0.998) TCGA-86-8076-01 16 24942523 24942523 C T ARHGAP17 Silent p.R699R 0.09 TCGA-86-8076-01 16 27782971 27782971 G A KIAA0556 Missense_Mutation p.G1399D 0.13 deleterious(0) probably_damaging(0.996) TCGA-86-8076-01 16 29086433 29086433 C A RRN3P2 RNA 0.24 TCGA-86-8076-01 16 3340303 3340303 A G ZNF263 Silent p.G599G 0.18 TCGA-86-8076-01 16 68260325 68260325 C T NFATC3 Missense_Mutation p.P1060L 0.05 deleterious_low_confidence(0.01) benign(0.069) TCGA-86-8076-01 16 88873493 88873493 C T CDT1 Missense_Mutation p.S386F 0.09 deleterious(0) benign(0.373) TCGA-86-8076-01 17 27067963 27067963 G A NEK8 Silent p.L564L 0.17 TCGA-86-8076-01 17 40321564 40321564 C A KCNH4 Silent p.P507P 0.14 TCGA-86-8076-01 17 62019102 62019102 C T SCN4A Missense_Mutation p.D1514N 0.09 tolerated(0.07) benign(0.221) TCGA-86-8076-01 17 7004980 7004980 C T ASGR2 Missense_Mutation p.D284N 0.14 tolerated(0.24) benign(0.03) TCGA-86-8076-01 18 33778703 33778703 G T MOCOS Nonsense_Mutation p.E95* 0.11 TCGA-86-8076-01 18 40695402 40695402 G C RIT2 Missense_Mutation p.A28G 0.13 tolerated(1) benign(0.025) TCGA-86-8076-01 18 50985713 50985713 A T DCC Silent p.P1168P 0.14 TCGA-86-8076-01 18 7015760 7015760 C A LAMA1 Missense_Mutation p.E1029D 0.12 tolerated(0.29) benign(0.049) TCGA-86-8076-01 19 12911052 12911052 C T PRDX2 Missense_Mutation p.V107M 0.11 tolerated(0.13) benign(0.269) TCGA-86-8076-01 19 23329199 23329199 C A ZNF730 Silent p.P451P 0.11 TCGA-86-8076-01 19 32902241 32902241 C T DPY19L3 Missense_Mutation p.T67M 0.07 deleterious(0) probably_damaging(0.973) TCGA-86-8076-01 19 51165512 51165512 C A SHANK1 Missense_Mutation p.G2066W 0.14 unknown(0) TCGA-86-8076-01 19 54823368 54823368 G A LILRA5 Missense_Mutation p.R59W 0.15 tolerated(1) benign(0.01) TCGA-86-8076-01 1 152058585 152058585 C G TCHHL1 Missense_Mutation p.E525Q 0.09 tolerated(0.1) benign(0.013) TCGA-86-8076-01 1 158651439 158651439 G A SPTA1 Missense_Mutation p.R137C 0.05 deleterious(0.04) benign(0.025) TCGA-86-8076-01 1 170633563 170633563 G C PRRX1 Silent p.P68P 0.31 TCGA-86-8076-01 1 202121776 202121776 C A PTPN7 Missense_Mutation p.D362Y 0.07 deleterious(0) probably_damaging(0.994) TCGA-86-8076-01 1 234563084 234563084 G A TARBP1 Missense_Mutation p.A1101V 0.04 deleterious(0) probably_damaging(0.998) TCGA-86-8076-01 1 237551425 237551425 G T RYR2 Nonsense_Mutation p.G239* 0.11 TCGA-86-8076-01 1 240979631 240979631 C G RGS7 Missense_Mutation p.E257Q 0.08 tolerated(0.2) possibly_damaging(0.543) TCGA-86-8076-01 1 247150277 247150277 G C ZNF695 Missense_Mutation p.H514D 0.07 deleterious(0) benign(0.048) TCGA-86-8076-01 1 26751900 26751900 C T LIN28A Missense_Mutation p.P112L 0.07 deleterious(0.02) probably_damaging(0.99) TCGA-86-8076-01 1 29320026 29320026 A G EPB41 Missense_Mutation p.D218G 0.09 deleterious(0) probably_damaging(0.999) TCGA-86-8076-01 1 91178090 91178090 A T BARHL2 Missense_Mutation p.Y315N 0.12 deleterious(0) unknown(0) TCGA-86-8076-01 21 19632535 19632535 C T CHODL Missense_Mutation p.P189L 0.12 deleterious(0.01) benign(0.079) TCGA-86-8076-01 21 47697526 47697526 G C MCM3AP Silent p.S591S 0.14 TCGA-86-8076-01 22 31524489 31524489 G A INPP5J Missense_Mutation p.R313H 0.24 deleterious(0) probably_damaging(1) TCGA-86-8076-01 2 190437623 190437623 C T SLC40A1 Missense_Mutation p.M112I 0.18 tolerated(0.22) benign(0.002) TCGA-86-8076-01 2 48925883 48925883 T G LHCGR Missense_Mutation p.Q246P 0.13 deleterious(0.03) possibly_damaging(0.884) TCGA-86-8076-01 2 96690533 96690533 G C GPAT2 Missense_Mutation p.F472L 0.12 tolerated(0.45) benign(0.006) TCGA-86-8076-01 3 133467289 133467289 G C TF Missense_Mutation p.R26T 0.07 deleterious(0.03) possibly_damaging(0.688) TCGA-86-8076-01 3 164908384 164908384 G C SLITRK3 Missense_Mutation p.P79A 0.08 tolerated(0.7) probably_damaging(0.997) TCGA-86-8076-01 4 38829364 38829364 C T TLR6 Missense_Mutation p.M577I 0.14 tolerated(0.14) benign(0.001) TCGA-86-8076-01 5 140793954 140793954 T G PCDHGA10 Missense_Mutation p.S404R 0.15 deleterious_low_confidence(0) benign(0.064) TCGA-86-8076-01 5 59284315 59284315 C T PDE4D Missense_Mutation p.G91D 0.11 tolerated_low_confidence(0.23) benign(0.029) TCGA-86-8076-01 5 63871619 63871619 C A RGS7BP Silent p.I117I 0.10 TCGA-86-8076-01 5 98192267 98192267 C A CHD1 Silent p.T1650T 0.10 TCGA-86-8076-01 6 31940149 31940149 C G STK19 Silent p.L97L 0.10 TCGA-86-8076-01 6 50810922 50810922 C T TFAP2B Silent p.L400L 0.15 TCGA-86-8076-01 7 102760405 102760405 T C NAPEPLD Missense_Mutation p.H187R 0.12 deleterious(0) probably_damaging(1) TCGA-86-8076-01 7 107431530 107431530 G A SLC26A3 Missense_Mutation p.A178V 0.05 tolerated(1) benign(0.194) TCGA-86-8076-01 7 107580787 107580787 G T LAMB1 Silent p.P1136P 0.06 TCGA-86-8076-01 7 117431743 117431743 G A CTTNBP2 Nonsense_Mutation p.Q503* 0.13 TCGA-86-8076-01 7 147914546 147914546 G T CNTNAP2 Missense_Mutation p.K1059N 0.12 tolerated(0.1) benign(0.006) TCGA-86-8076-01 7 40220549 40220549 T A SUGCT Missense_Mutation p.M42K 0.12 tolerated(0.9) benign(0.003) TCGA-86-8076-01 7 41729713 41729713 C T INHBA Silent p.K272K 0.09 TCGA-86-8076-01 7 47832227 47832227 C T PKD1L1 Missense_Mutation p.E2842K 0.12 tolerated(0.43) benign(0.049) TCGA-86-8076-01 7 81591791 81591791 A C CACNA2D1 Missense_Mutation p.L934R 0.20 deleterious(0) possibly_damaging(0.632) TCGA-86-8076-01 7 98457809 98457809 C A TMEM130 Missense_Mutation p.G182W 0.14 deleterious(0) probably_damaging(1) TCGA-86-8076-01 7 99447302 99447302 T C CYP3A43 Missense_Mutation p.F219L 0.10 tolerated(1) benign(0.003) TCGA-86-8076-01 8 145111642 145111642 C A OPLAH Nonsense_Mutation p.E575* 0.06 TCGA-86-8076-01 8 39695678 39695678 G A ADAM2 Silent p.S9S 0.08 TCGA-86-8076-01 9 116053823 116053823 G A PRPF4 Silent p.P484P 0.08 TCGA-86-8076-01 9 117033023 117033023 G C COL27A1 Missense_Mutation p.E1191Q 0.07 probably_damaging(0.995) TCGA-86-8076-01 9 125621297 125621297 G A RC3H2 Missense_Mutation p.S645F 0.12 deleterious(0.01) probably_damaging(0.982) TCGA-86-8076-01 9 135564267 135564267 G C GTF3C4 Splice_Site p.X802_splice 0.09 TCGA-86-8076-01 9 40716192 40716192 T A FAM74A3 RNA 0.08 TCGA-86-8076-01 X 100169411 100169411 A G XKRX Silent p.C422C 0.26 TCGA-86-8076-01 X 35820674 35820674 G T MAGEB16 Missense_Mutation p.V121L 0.31 deleterious(0.03) possibly_damaging(0.876) TCGA-86-8076-01 X 41206647 41206647 G A DDX3X Missense_Mutation p.A618T 0.22 tolerated(0.33) unknown(0) TCGA-86-8076-01 X 55033574 55033574 C G APEX2 Silent p.L421L 0.36 TCGA-86-8076-01 X 7023808 7023808 C A HDHD1 Missense_Mutation p.V68L 0.31 tolerated(0.17) benign(0.009) TCGA-86-8076-01 X 83403065 83403065 T C RPS6KA6 Missense_Mutation p.K109E 0.25 deleterious(0) probably_damaging(0.936) TCGA-86-8278-01 10 1046796 1046796 C G GTPBP4 Silent p.L278L 0.21 TCGA-86-8278-01 10 29775482 29775482 G A SVIL Missense_Mutation p.S1497L 0.16 tolerated(0.05) benign(0.385) TCGA-86-8278-01 10 29822111 29822111 T A SVIL Silent p.A395A 0.46 TCGA-86-8278-01 10 6504277 6504277 C G PRKCQ Missense_Mutation p.G499A 0.10 deleterious(0.05) probably_damaging(0.982) TCGA-86-8278-01 10 75888899 75888899 A G AP3M1 Missense_Mutation p.F257S 0.34 deleterious(0) probably_damaging(0.994) TCGA-86-8278-01 11 117647590 117647590 C T DSCAML1 Missense_Mutation p.V203I 0.20 tolerated(0.11) benign(0.216) TCGA-86-8278-01 11 118343273 118343273 C G KMT2A Missense_Mutation p.Q467E 0.08 possibly_damaging(0.759) TCGA-86-8278-01 11 119030980 119030980 C T ABCG4 Missense_Mutation p.T494M 0.05 deleterious(0) probably_damaging(0.909) TCGA-86-8278-01 11 130332468 130332468 C T ADAMTS15 Silent p.S445S 0.07 TCGA-86-8278-01 11 134010629 134010629 C A JAM3 Missense_Mutation p.Q74K 0.07 tolerated(0.84) benign(0.026) TCGA-86-8278-01 11 45882448 45882448 C G CRY2 Missense_Mutation p.Q194E 0.12 tolerated(0.11) benign(0.345) TCGA-86-8278-01 11 60887037 60887037 C T CD5 Silent p.L265L 0.09 TCGA-86-8278-01 11 61579955 61579955 G A FADS1 Silent p.L224L 0.11 TCGA-86-8278-01 11 62293455 62293455 C T AHNAK Missense_Mutation p.E2812K 0.08 probably_damaging(0.987) TCGA-86-8278-01 11 62521022 62521022 G A ZBTB3 Missense_Mutation p.R89W 0.07 deleterious(0) probably_damaging(1) TCGA-86-8278-01 11 67077754 67077754 C T SSH3 Missense_Mutation p.L543F 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-86-8278-01 11 68747745 68747745 C T MRGPRD Silent p.L237L 0.11 TCGA-86-8278-01 11 9215173 9215173 G A DENND5A Silent p.F335F 0.06 TCGA-86-8278-01 12 114392972 114392972 G A RBM19 Silent p.T295T 0.10 TCGA-86-8278-01 12 40110563 40110563 G C C12orf40 Missense_Mutation p.D473H 0.10 deleterious(0.04) benign(0.133) TCGA-86-8278-01 12 50867789 50867789 C T LARP4 Nonsense_Mutation p.Q559* 0.25 TCGA-86-8278-01 12 52844279 52844279 C G KRT6B Missense_Mutation p.R222S 0.07 deleterious(0.04) possibly_damaging(0.585) TCGA-86-8278-01 12 52845433 52845433 G C KRT6B Missense_Mutation p.L144V 0.10 deleterious(0) probably_damaging(0.998) TCGA-86-8278-01 12 53007535 53007535 A G KRT73 Silent p.R307R 0.11 TCGA-86-8278-01 12 66641971 66641971 A G IRAK3 3'UTR 0.27 TCGA-86-8278-01 12 92818616 92818616 C G CLLU1 Missense_Mutation p.Q54E 0.16 benign(0.095) TCGA-86-8278-01 13 41766270 41766270 A G KBTBD7 3'UTR 0.10 TCGA-86-8278-01 14 21860939 21860939 G A CHD8 Silent p.L2166L 0.04 TCGA-86-8278-01 14 50626266 50626266 C G SOS2 Missense_Mutation p.D579H 0.11 deleterious(0) probably_damaging(0.999) TCGA-86-8278-01 14 96949359 96949359 C T AK7 Nonsense_Mutation p.Q593* 0.08 TCGA-86-8278-01 15 28408392 28408392 G C HERC2 Missense_Mutation p.Q3532E 0.16 benign(0.04) TCGA-86-8278-01 15 41145359 41145359 G C SPINT1 Missense_Mutation p.L171F 0.10 deleterious(0.05) possibly_damaging(0.873) TCGA-86-8278-01 15 41763377 41763377 G A RTF1 Missense_Mutation p.E345K 0.07 tolerated(0.11) benign(0.154) TCGA-86-8278-01 15 42483722 42483722 T C VPS39 Missense_Mutation p.N59S 0.29 tolerated(0.24) benign(0.089) TCGA-86-8278-01 15 45007954 45007954 C T B2M Intron 0.12 TCGA-86-8278-01 15 63053961 63053961 C T TLN2 Silent p.L1574L 0.10 TCGA-86-8278-01 15 73862612 73862612 G A NPTN Silent p.L331L 0.06 TCGA-86-8278-01 15 78921885 78921885 G C CHRNB4 Missense_Mutation p.F254L 0.09 deleterious(0) probably_damaging(0.999) TCGA-86-8278-01 16 24226106 24226106 C T PRKCB Missense_Mutation p.S664F 0.11 deleterious(0) benign(0.061) TCGA-86-8278-01 16 31895893 31895893 G C ZNF267 Missense_Mutation p.K26N 0.09 deleterious(0.01) possibly_damaging(0.587) TCGA-86-8278-01 16 51175636 51175636 G A SALL1 Missense_Mutation p.S166F 0.23 deleterious(0.02) benign(0.193) TCGA-86-8278-01 16 56995861 56995861 C T CETP 5'UTR 0.11 TCGA-86-8278-01 16 67984319 67984319 G C SLC12A4 Missense_Mutation p.S513C 0.12 tolerated(0.05) probably_damaging(0.993) TCGA-86-8278-01 16 71209640 71209640 G T HYDIN Missense_Mutation p.P129Q 0.09 probably_damaging(0.98) TCGA-86-8278-01 17 18675854 18675854 C T FBXW10 Silent p.L712L 0.04 TCGA-86-8278-01 17 1946217 1946217 C T OVCA2 Missense_Mutation p.S168L 0.20 tolerated(0.17) benign(0.01) TCGA-86-8278-01 17 27050466 27050466 C G RPL23A Intron 0.10 TCGA-86-8278-01 17 27285124 27285124 C T SEZ6 Missense_Mutation p.E715K 0.09 deleterious(0) probably_damaging(0.996) TCGA-86-8278-01 17 29663892 29663892 C T NF1 Silent p.I2129I 0.06 TCGA-86-8278-01 17 41003744 41003744 C T AOC3 Silent p.V128V 0.09 TCGA-86-8278-01 17 42991101 42991101 C G GFAP Missense_Mutation p.E205Q 0.08 deleterious(0.01) possibly_damaging(0.845) TCGA-86-8278-01 17 56274588 56274588 C T EPX Missense_Mutation p.R364C 0.23 deleterious(0.01) possibly_damaging(0.727) TCGA-86-8278-01 17 56295993 56295993 G A MKS1 Nonsense_Mutation p.Q60* 0.10 TCGA-86-8278-01 17 61021629 61021629 G A MIR633 RNA 0.20 TCGA-86-8278-01 17 8197961 8197961 C G SLC25A35 Missense_Mutation p.K55N 0.17 deleterious(0) possibly_damaging(0.848) TCGA-86-8278-01 17 8526577 8526577 G A MYH10 5'UTR 0.10 TCGA-86-8278-01 18 29867444 29867444 G C GAREM Silent p.L372L 0.11 TCGA-86-8278-01 18 31803153 31803153 G A NOL4 Missense_Mutation p.S22L 0.11 tolerated(0.12) probably_damaging(0.981) TCGA-86-8278-01 18 45395737 45395737 G A SMAD2 Missense_Mutation p.R133C 0.14 deleterious(0) probably_damaging(0.999) TCGA-86-8278-01 18 61170562 61170562 G C SERPINB5 Splice_Site p.X246_splice 0.15 TCGA-86-8278-01 19 19119230 19119230 C A SUGP2 Missense_Mutation p.M782I 0.12 tolerated(0.07) benign(0.001) TCGA-86-8278-01 19 20229886 20229886 C T ZNF90 Missense_Mutation p.P508L 0.18 tolerated(0.08) possibly_damaging(0.755) TCGA-86-8278-01 19 35642286 35642286 C T FXYD7 Intron 0.06 TCGA-86-8278-01 19 51507041 51507041 G C KLK9 Silent p.L174L 0.11 TCGA-86-8278-01 19 53208852 53208852 C T ZNF611 Missense_Mutation p.E486K 0.06 deleterious(0.01) probably_damaging(0.994) TCGA-86-8278-01 19 58850030 58850030 G A ZSCAN22 Missense_Mutation p.E272K 0.15 tolerated(0.39) benign(0.004) TCGA-86-8278-01 19 9204438 9204438 A T OR1M1 Missense_Mutation p.E173V 0.15 tolerated(0.36) benign(0.009) TCGA-86-8278-01 1 152277530 152277530 G A FLG Missense_Mutation p.H3278Y 0.11 unknown(0) TCGA-86-8278-01 1 208206751 208206751 C G PLXNA2 Missense_Mutation p.K1656N 0.11 deleterious(0) benign(0.296) TCGA-86-8278-01 1 223177283 223177283 C T DISP1 Silent p.F848F 0.06 TCGA-86-8278-01 1 227920197 227920197 C T JMJD4 Missense_Mutation p.A430T 0.07 tolerated(0.29) benign(0.005) TCGA-86-8278-01 1 27087558 27087558 C G ARID1A Nonsense_Mutation p.S711* 0.11 TCGA-86-8278-01 1 27695886 27695886 C T FCN3 Silent p.V247V 0.08 TCGA-86-8278-01 1 32828254 32828254 C G TSSK3 5'UTR 0.12 TCGA-86-8278-01 1 55524239 55524239 C T PCSK9 Silent p.V474V 0.38 TCGA-86-8278-01 20 19997960 19997960 G A NAA20 5'UTR 0.56 TCGA-86-8278-01 20 32267680 32267680 G A E2F1 Silent p.V151V 0.06 TCGA-86-8278-01 20 45130568 45130568 G C ZNF334 Missense_Mutation p.F470L 0.10 deleterious(0.02) probably_damaging(0.993) TCGA-86-8278-01 20 50407577 50407577 G C SALL4 Missense_Mutation p.S482C 0.09 deleterious(0) benign(0.003) TCGA-86-8278-01 20 54575811 54575811 T G CBLN4 Missense_Mutation p.K128N 0.26 deleterious(0) probably_damaging(0.988) TCGA-86-8278-01 20 56093647 56093647 C G CTCFL Intron 0.11 TCGA-86-8278-01 20 60775768 60775768 G A MTG2 Missense_Mutation p.A286T 0.08 deleterious(0) probably_damaging(1) TCGA-86-8278-01 21 42720524 42720524 A G FAM3B Missense_Mutation p.N164S 0.14 tolerated(0.09) benign(0.096) TCGA-86-8278-01 22 20077655 20077655 G A DGCR8 Missense_Mutation p.E394K 0.13 tolerated(0.09) benign(0.046) TCGA-86-8278-01 22 26694960 26694960 G C SEZ6L Silent p.L391L 0.12 TCGA-86-8278-01 22 40161360 40161360 C T ENTHD1 Missense_Mutation p.E363K 0.20 deleterious(0) probably_damaging(0.999) TCGA-86-8278-01 22 51063878 51063878 C T ARSA Missense_Mutation p.D409N 0.09 tolerated(0.26) benign(0.111) TCGA-86-8278-01 2 136527345 136527345 A G UBXN4 Silent p.T203T 0.20 TCGA-86-8278-01 2 15601361 15601361 G A NBAS Missense_Mutation p.S768F 0.06 deleterious(0) probably_damaging(0.982) TCGA-86-8278-01 2 168074739 168074739 G A XIRP2 Missense_Mutation p.E263K 0.15 possibly_damaging(0.682) TCGA-86-8278-01 2 179458065 179458065 G A TTN Nonsense_Mutation p.R19624* 0.04 TCGA-86-8278-01 2 204354708 204354708 G C RAPH1 Missense_Mutation p.Q111E 0.17 benign(0.093) TCGA-86-8278-01 2 231404078 231404078 C G SP100 Missense_Mutation p.P731A 0.09 tolerated(0.25) possibly_damaging(0.728) TCGA-86-8278-01 2 242752478 242752478 A G NEU4 5'UTR 0.29 TCGA-86-8278-01 2 39514030 39514030 C T MAP4K3 Missense_Mutation p.G517D 0.09 tolerated(0.66) benign(0) TCGA-86-8278-01 2 39515342 39515342 G C MAP4K3 Nonsense_Mutation p.S465* 0.08 TCGA-86-8278-01 2 40657060 40657060 C A SLC8A1 Nonsense_Mutation p.E121* 0.07 TCGA-86-8278-01 3 119501587 119501587 G C NR1I2 5'UTR 0.07 TCGA-86-8278-01 3 137822885 137822886 GA - DZIP1L 5'UTR 0.23 TCGA-86-8278-01 3 148802508 148802508 C G HLTF Missense_Mutation p.L63F 0.10 deleterious(0.04) possibly_damaging(0.856) TCGA-86-8278-01 3 185969566 185969566 G A DGKG Silent p.N581N 0.06 TCGA-86-8278-01 3 47144879 47144879 C T SETD2 Missense_Mutation p.R1625H 0.30 deleterious(0) probably_damaging(0.961) TCGA-86-8278-01 4 2073806 2073806 G A POLN 3'UTR 0.18 TCGA-86-8278-01 4 6969135 6969135 C T TBC1D14 Missense_Mutation p.S276L 0.06 deleterious(0.02) benign(0.089) TCGA-86-8278-01 4 77116943 77116943 G C SCARB2 Missense_Mutation p.F64L 0.08 deleterious(0) probably_damaging(0.976) TCGA-86-8278-01 4 99806173 99806173 C A EIF4E Missense_Mutation p.D178Y 0.09 deleterious(0) possibly_damaging(0.637) TCGA-86-8278-01 5 138210642 138210642 A T LRRTM2 5'UTR 0.11 TCGA-86-8278-01 5 140215972 140215972 G A PCDHA7 Silent p.S668S 0.15 TCGA-86-8278-01 5 34687012 34687012 G A RAI14 5'UTR 0.07 TCGA-86-8278-01 5 40852462 40852462 C G CARD6 Nonsense_Mutation p.S343* 0.23 TCGA-86-8278-01 5 71757084 71757084 C G ZNF366 Missense_Mutation p.K80N 0.15 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-86-8278-01 6 114378669 114378669 C T HS3ST5 Missense_Mutation p.E265K 0.10 deleterious(0) probably_damaging(0.997) TCGA-86-8278-01 6 126329609 126329609 C T TRMT11 Missense_Mutation p.H251Y 0.04 deleterious(0.04) possibly_damaging(0.568) TCGA-86-8278-01 6 131206323 131206323 G A EPB41L2 Silent p.V582V 0.12 TCGA-86-8278-01 6 157522462 157522462 G C ARID1B Missense_Mutation p.M1578I 0.10 benign(0.074) TCGA-86-8278-01 6 27833496 27833496 G A HIST1H2AL Missense_Mutation p.E122K 0.09 tolerated_low_confidence(0.2) benign(0.101) TCGA-86-8278-01 6 27835177 27835177 G A HIST1H1B Missense_Mutation p.S44L 0.08 deleterious(0) probably_damaging(0.985) TCGA-86-8278-01 6 31671076 31671076 C T ABHD16A 5'UTR 0.29 TCGA-86-8278-01 6 33636799 33636799 C T ITPR3 Silent p.I685I 0.09 TCGA-86-8278-01 6 33639882 33639882 C G ITPR3 Silent p.V935V 0.09 TCGA-86-8278-01 6 43164573 43164573 G C CUL9 Missense_Mutation p.E926Q 0.07 tolerated(0.27) benign(0.017) TCGA-86-8278-01 6 43324906 43324906 C G ZNF318 Missense_Mutation p.L382F 0.08 probably_damaging(1) TCGA-86-8278-01 7 148456413 148456413 G C CUL1 Missense_Mutation p.W167C 0.14 deleterious(0) probably_damaging(1) TCGA-86-8278-01 7 156468528 156468528 G A RNF32 Missense_Mutation p.E275K 0.14 deleterious(0.03) benign(0.004) TCGA-86-8278-01 7 26246107 26246107 C T CBX3 Silent p.F48F 0.06 TCGA-86-8278-01 7 36429575 36429575 C T KIAA0895 Splice_Site p.X36_splice 0.24 TCGA-86-8278-01 7 5569207 5569207 G A ACTB Missense_Mutation p.R28W 0.10 deleterious_low_confidence(0.02) benign(0.001) TCGA-86-8278-01 7 6631442 6631442 A T C7orf26 Missense_Mutation p.M120L 0.04 tolerated(0.15) benign(0.018) TCGA-86-8278-01 7 94033913 94033913 G A COL1A2 Splice_Site p.X108_splice 0.39 TCGA-86-8278-01 8 100673634 100673634 G C VPS13B Missense_Mutation p.Q2012H 0.11 deleterious(0) probably_damaging(0.948) TCGA-86-8278-01 8 101721902 101721902 C T PABPC1 Missense_Mutation p.E344K 0.10 deleterious(0.01) possibly_damaging(0.733) TCGA-86-8278-01 8 124253610 124253610 G A C8orf76 5'UTR 0.25 TCGA-86-8278-01 8 144996769 144996769 T C PLEC Missense_Mutation p.H2580R 0.15 benign(0.008) TCGA-86-8278-01 8 48320493 48320493 C G SPIDR Missense_Mutation p.Q283E 0.08 deleterious(0.03) probably_damaging(0.946) TCGA-86-8278-01 8 8197004 8197004 G T SGK223 Nonsense_Mutation p.C768* 0.08 TCGA-86-8278-01 8 8197005 8197005 C T SGK223 Missense_Mutation p.C768Y 0.08 possibly_damaging(0.726) TCGA-86-8278-01 8 91094909 91094909 A T CALB1 Missense_Mutation p.L6Q 0.16 deleterious(0) probably_damaging(1) TCGA-86-8278-01 9 108151475 108151475 T C SLC44A1 3'UTR 0.26 TCGA-86-8278-01 9 123220760 123220760 G A CDK5RAP2 Silent p.F781F 0.19 TCGA-86-8278-01 9 130420712 130420712 C T STXBP1 Silent p.L76L 0.08 TCGA-86-8278-01 9 32457215 32457215 C T DDX58 Missense_Mutation p.E895K 0.05 tolerated(0.09) benign(0.043) TCGA-86-8278-01 X 134303634 134303634 C T CT55 Missense_Mutation p.E55K 0.06 deleterious(0.03) benign(0.332) TCGA-86-8278-01 X 134989501 134989501 G A SAGE1 Missense_Mutation p.E303K 0.08 deleterious(0.04) benign(0.006) TCGA-86-8278-01 X 69269714 69269714 G A AWAT2 Silent p.F23F 0.13 TCGA-86-8278-01 X 70511681 70511681 C T NONO Silent p.T69T 0.06 TCGA-86-8279-01 10 104622812 104622812 G T C10orf32 3'UTR 0.63 TCGA-86-8279-01 10 107015521 107015521 G T SORCS3 Missense_Mutation p.G1100V 0.52 deleterious(0.03) probably_damaging(0.996) TCGA-86-8279-01 10 113932821 113932821 C A GPAM Silent p.L188L 0.59 TCGA-86-8279-01 10 115381756 115381756 C A NRAP Missense_Mutation p.V881L 0.62 tolerated(0.11) benign(0.024) TCGA-86-8279-01 10 125801848 125801848 C A CHST15 Missense_Mutation p.K334N 0.18 tolerated(0.48) benign(0.003) TCGA-86-8279-01 10 127967524 127967524 G T ADAM12 Silent p.R74R 0.18 TCGA-86-8279-01 10 1405750 1405750 G A ADARB2 Silent p.L184L 0.31 TCGA-86-8279-01 10 17152971 17152971 G T CUBN Missense_Mutation p.P321H 0.11 tolerated(0.55) benign(0.016) TCGA-86-8279-01 10 18885149 18885149 T A NSUN6 Silent p.L255L 0.25 TCGA-86-8279-01 10 25887296 25887296 T C GPR158 Missense_Mutation p.L914P 0.20 tolerated(0.09) possibly_damaging(0.473) TCGA-86-8279-01 10 44053474 44053474 T A ZNF239 Missense_Mutation p.E18D 0.59 tolerated_low_confidence(0.08) benign(0.027) TCGA-86-8279-01 10 44874090 44874090 T A CXCL12 Missense_Mutation p.L87F 0.55 deleterious(0.02) benign(0.251) TCGA-86-8279-01 10 46918260 46918260 G A RP11-38L15.8 5'Flank 0.51 TCGA-86-8279-01 10 50819648 50819648 G T SLC18A3 Missense_Mutation p.D288Y 0.40 deleterious(0) probably_damaging(1) TCGA-86-8279-01 10 50857604 50857604 C A CHAT Missense_Mutation p.P478H 0.54 deleterious(0) probably_damaging(0.995) TCGA-86-8279-01 10 50960711 50960711 C A OGDHL Missense_Mutation p.D151Y 0.46 deleterious(0) benign(0.373) TCGA-86-8279-01 10 52005044 52005044 T A ASAH2 Missense_Mutation p.S100C 0.51 deleterious(0.04) possibly_damaging(0.827) TCGA-86-8279-01 10 5437434 5437434 C A TUBAL3 Silent p.G84G 0.45 TCGA-86-8279-01 10 64415347 64415347 C A ZNF365 Intron 0.11 TCGA-86-8279-01 10 6506320 6506320 A G PRKCQ Missense_Mutation p.M467T 0.20 deleterious(0) probably_damaging(0.97) TCGA-86-8279-01 10 71677069 71677069 C T COL13A1 Missense_Mutation p.P326S 0.45 deleterious(0.05) probably_damaging(0.994) TCGA-86-8279-01 10 7801895 7801895 G A KIN Silent p.S359S 0.20 TCGA-86-8279-01 10 909761 909761 C A LARP4B Nonsense_Mutation p.E118* 0.51 TCGA-86-8279-01 10 93741962 93741962 G T BTAF1 Silent p.R676R 0.20 TCGA-86-8279-01 10 98416666 98416666 G A PIK3AP1 Silent p.D152D 0.48 TCGA-86-8279-01 11 102641521 102641521 C T MMP10 3'UTR 0.42 TCGA-86-8279-01 11 105880187 105880188 - A MSANTD4 3'UTR 0.41 TCGA-86-8279-01 11 111747634 111747634 C A FDXACB1 Missense_Mutation p.S144I 0.41 deleterious(0) probably_damaging(1) TCGA-86-8279-01 11 1156617 1156617 G T MUC5AC Missense_Mutation p.G212W 0.63 deleterious(0.01) probably_damaging(0.947) TCGA-86-8279-01 11 119029567 119029567 G T ABCG4 Missense_Mutation p.R455S 0.27 deleterious(0) probably_damaging(0.991) TCGA-86-8279-01 11 119029568 119029568 G T ABCG4 Nonsense_Mutation p.E456* 0.27 TCGA-86-8279-01 11 119213315 119213315 G C MFRP Missense_Mutation p.P460A 0.35 deleterious(0.01) possibly_damaging(0.725) TCGA-86-8279-01 11 119983066 119983066 C T TRIM29 3'UTR 0.23 TCGA-86-8279-01 11 121986417 121986417 G T BLID Missense_Mutation p.L72I 0.28 deleterious_low_confidence(0.04) possibly_damaging(0.801) TCGA-86-8279-01 11 124294457 124294457 C A OR8B4 Missense_Mutation p.C104F 0.30 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-86-8279-01 11 130781617 130781617 G T SNX19 Missense_Mutation p.A575D 0.16 deleterious(0) probably_damaging(0.978) TCGA-86-8279-01 11 14989257 14989257 C A CALCA 3'Flank 0.55 TCGA-86-8279-01 11 14992673 14992673 G T CALCA Missense_Mutation p.S22R 0.32 tolerated(0.24) benign(0.008) TCGA-86-8279-01 11 20623085 20623085 G C SLC6A5 Missense_Mutation p.K138N 0.62 deleterious_low_confidence(0.04) benign(0.055) TCGA-86-8279-01 11 22384322 22384322 T A SLC17A6 Silent p.A233A 0.67 TCGA-86-8279-01 11 33583225 33583225 T C KIAA1549L Missense_Mutation p.L1044P 0.29 deleterious(0) probably_damaging(1) TCGA-86-8279-01 11 36483953 36483953 C T PRR5L Silent p.T258T 0.31 TCGA-86-8279-01 11 40137522 40137522 C A LRRC4C Missense_Mutation p.L107F 0.62 deleterious(0.03) probably_damaging(0.945) TCGA-86-8279-01 11 44105032 44105032 A T ACCS Missense_Mutation p.N438I 0.49 deleterious(0) possibly_damaging(0.824) TCGA-86-8279-01 11 46895208 46895208 C A LRP4 Intron 0.44 TCGA-86-8279-01 11 47312317 47312317 A T MADD Missense_Mutation p.K1104M 0.40 deleterious(0.04) possibly_damaging(0.642) TCGA-86-8279-01 11 47381498 47381498 G - SPI1 Frame_Shift_Del p.P80Rfs*107 0.15 TCGA-86-8279-01 11 55135884 55135884 G - OR4A15 Frame_Shift_Del p.A176Pfs*38 0.22 TCGA-86-8279-01 11 55433394 55433394 C A OR4C6 Missense_Mutation p.P251H 0.40 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-86-8279-01 11 55595300 55595300 G A OR5L2 Silent p.V202V 0.40 TCGA-86-8279-01 11 56020164 56020164 A G OR5T3 Silent p.S163S 0.35 TCGA-86-8279-01 11 56085802 56085802 C T OR8K3 Missense_Mutation p.T7I 0.33 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-86-8279-01 11 56310206 56310206 G T OR5M11 Missense_Mutation p.F176L 0.29 deleterious(0) probably_damaging(0.999) TCGA-86-8279-01 11 56468496 56468496 G A OR9G1 Silent p.V211V 0.12 TCGA-86-8279-01 11 57085327 57085327 G A TNKS1BP1 Silent p.L255L 0.10 TCGA-86-8279-01 11 58190313 58190313 C G OR5B2 Missense_Mutation p.C141S 0.35 tolerated_low_confidence(0.42) benign(0.005) TCGA-86-8279-01 11 58602247 58602247 C G GLYATL2 Missense_Mutation p.W180C 0.06 deleterious(0) probably_damaging(0.999) TCGA-86-8279-01 11 59620360 59620360 G T TCN1 3'UTR 0.44 TCGA-86-8279-01 11 609288 609288 G A PHRF1 Missense_Mutation p.A1277T 0.70 tolerated(0.47) benign(0.001) TCGA-86-8279-01 11 61533620 61533620 G T MYRF Missense_Mutation p.A109S 0.59 tolerated(0.27) benign(0.006) TCGA-86-8279-01 11 63065112 63065112 T A SLC22A10 Missense_Mutation p.L248Q 0.41 deleterious(0) probably_damaging(0.997) TCGA-86-8279-01 11 63681469 63681469 G T RCOR2 Missense_Mutation p.T283K 0.03 deleterious(0.01) benign(0.25) TCGA-86-8279-01 11 64757246 64757246 C A BATF2 Silent p.R60R 0.30 TCGA-86-8279-01 11 64897831 64897831 G A SYVN1 Missense_Mutation p.P376S 0.26 tolerated(0.55) unknown(0) TCGA-86-8279-01 11 65365945 65365945 C A MAP3K11 Silent p.R787R 0.40 TCGA-86-8279-01 11 65365946 65365946 C A MAP3K11 Missense_Mutation p.R787L 0.40 deleterious_low_confidence(0.01) probably_damaging(0.931) TCGA-86-8279-01 11 65765862 65765862 C A EIF1AD 3'UTR 0.38 TCGA-86-8279-01 11 66307226 66307226 C T ZDHHC24 Missense_Mutation p.C210Y 0.45 deleterious(0) probably_damaging(0.999) TCGA-86-8279-01 11 6898668 6898668 C A OR10A4 Missense_Mutation p.Q264K 0.65 tolerated(1) benign(0) TCGA-86-8279-01 11 73979202 73979202 C A P4HA3 Nonsense_Mutation p.G518* 0.28 TCGA-86-8279-01 11 7662730 7662730 G T PPFIBP2 Missense_Mutation p.D466Y 0.56 deleterious(0.01) possibly_damaging(0.823) TCGA-86-8279-01 11 7960704 7960704 G T OR10A3 Silent p.R122R 0.66 TCGA-86-8279-01 11 82874805 82874805 G T PCF11 Missense_Mutation p.D135Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-86-8279-01 11 85436362 85436362 G T SYTL2 Missense_Mutation p.P380T 0.31 deleterious(0) benign(0.382) TCGA-86-8279-01 11 92430547 92430547 C G FAT3 Intron 0.14 TCGA-86-8279-01 11 92616396 92616396 C T FAT3 Silent p.G4258G 0.18 TCGA-86-8279-01 11 94113754 94113754 T C GPR83 Missense_Mutation p.E278G 0.19 deleterious(0.03) possibly_damaging(0.61) TCGA-86-8279-01 11 99931999 99931999 C A CNTN5 Missense_Mutation p.R346S 0.41 deleterious(0.03) probably_damaging(0.999) TCGA-86-8279-01 12 10149566 10149566 C A CLEC1B Missense_Mutation p.W106L 0.66 tolerated(0.07) probably_damaging(0.924) TCGA-86-8279-01 12 104378659 104378659 C A TDG Missense_Mutation p.Q309K 0.19 tolerated(0.16) benign(0.003) TCGA-86-8279-01 12 110765497 110765497 G A ATP2A2 Missense_Mutation p.G257E 0.70 deleterious(0) probably_damaging(1) TCGA-86-8279-01 12 130647590 130647590 C A FZD10 Missense_Mutation p.Q35K 0.68 deleterious(0.01) probably_damaging(0.981) TCGA-86-8279-01 12 132335654 132335654 T A MMP17 Missense_Mutation p.H549Q 0.50 tolerated(0.46) benign(0.007) TCGA-86-8279-01 12 14578050 14578050 G T ATF7IP Nonsense_Mutation p.E401* 0.29 TCGA-86-8279-01 12 29673648 29673648 C - TMTC1 Frame_Shift_Del p.F598Lfs*12 0.29 TCGA-86-8279-01 12 31131514 31131514 G T TSPAN11 Missense_Mutation p.V99F 0.49 tolerated(0.18) benign(0.054) TCGA-86-8279-01 12 34179850 34179850 A T ALG10 Nonstop_Mutation p.*474Yext*3 0.13 TCGA-86-8279-01 12 40012821 40012821 C A ABCD2 Missense_Mutation p.M199I 0.35 deleterious(0.01) benign(0.439) TCGA-86-8279-01 12 42707554 42707554 C A ZCRB1 Nonsense_Mutation p.E154* 0.71 TCGA-86-8279-01 12 49359938 49359938 C A WNT10B Missense_Mutation p.W370C 0.68 deleterious(0) probably_damaging(0.998) TCGA-86-8279-01 12 49359939 49359939 C A WNT10B Missense_Mutation p.W370L 0.68 deleterious(0) probably_damaging(0.995) TCGA-86-8279-01 12 49993925 49993925 A T FAM186B Missense_Mutation p.W500R 0.67 deleterious(0.03) probably_damaging(1) TCGA-86-8279-01 12 50369254 50369254 T A AQP6 Missense_Mutation p.W217R 0.65 deleterious(0.02) probably_damaging(0.999) TCGA-86-8279-01 12 52145288 52145288 A G SCN8A Missense_Mutation p.I761V 0.73 tolerated(0.13) benign(0.02) TCGA-86-8279-01 12 57968992 57968992 G A KIF5A Silent p.E614E 0.77 TCGA-86-8279-01 12 58130938 58130938 G A AGAP2 Silent p.P364P 0.80 TCGA-86-8279-01 12 70965815 70965815 A G PTPRB Silent p.Y965Y 0.21 TCGA-86-8279-01 12 72094754 72094754 G T TMEM19 Missense_Mutation p.W330C 0.68 tolerated(0.16) possibly_damaging(0.759) TCGA-86-8279-01 12 72863552 72863552 C A TRHDE Missense_Mutation p.P399T 0.54 deleterious(0) possibly_damaging(0.875) TCGA-86-8279-01 12 76741266 76741266 T A BBS10 Missense_Mutation p.R167W 0.60 deleterious(0) probably_damaging(0.999) TCGA-86-8279-01 13 103710654 103710654 C A SLC10A2 Missense_Mutation p.W152C 0.53 deleterious(0) probably_damaging(0.997) TCGA-86-8279-01 13 24466126 24466126 G T C1QTNF9B Missense_Mutation p.P102T 0.38 deleterious(0.02) probably_damaging(1) TCGA-86-8279-01 13 25075913 25075913 G T PARP4 Silent p.I64I 0.05 TCGA-86-8279-01 13 33344513 33344513 A T PDS5B Silent p.P1293P 0.50 TCGA-86-8279-01 13 36348777 36348777 C A DCLK1 3'UTR 0.60 TCGA-86-8279-01 13 39338555 39338555 G T FREM2 Missense_Mutation p.R1793L 0.56 deleterious(0.01) probably_damaging(0.984) TCGA-86-8279-01 13 42877890 42877890 A T AKAP11 Missense_Mutation p.S1670C 0.23 deleterious(0) probably_damaging(1) TCGA-86-8279-01 13 61060026 61060026 G T TDRD3 Missense_Mutation p.D221Y 0.52 deleterious(0) probably_damaging(0.986) TCGA-86-8279-01 13 72134085 72134085 C G DACH1 Missense_Mutation p.E436D 0.50 probably_damaging(0.978) TCGA-86-8279-01 13 95279405 95279405 A T GPR180 Nonsense_Mutation p.K435* 0.60 TCGA-86-8279-01 13 96086095 96086095 G T CLDN10 Missense_Mutation p.R3M 0.56 tolerated(0.08) benign(0.002) TCGA-86-8279-01 14 105416396 105416396 C A AHNAK2 Missense_Mutation p.A1798S 0.33 benign(0.343) TCGA-86-8279-01 14 20612197 20612197 C A OR4N5 Silent p.L101L 0.69 TCGA-86-8279-01 14 20825623 20825623 A C PARP2 Missense_Mutation p.K512N 0.31 deleterious(0.01) possibly_damaging(0.838) TCGA-86-8279-01 14 23512138 23512138 A T PSMB11 Missense_Mutation p.H235L 0.74 tolerated(0.51) benign(0.009) TCGA-86-8279-01 14 23859509 23859509 G A MYH6 Silent p.I1163I 0.38 TCGA-86-8279-01 14 24883799 24883799 T C NYNRIN Intron 0.71 TCGA-86-8279-01 14 52735209 52735209 A G PTGDR Missense_Mutation p.Y226C 0.56 tolerated(0.18) probably_damaging(0.999) TCGA-86-8279-01 14 60938156 60938156 A G C14orf39 Missense_Mutation p.L178P 0.64 deleterious(0) benign(0.204) TCGA-86-8279-01 14 64749457 64749457 G T ESR2 Missense_Mutation p.P83T 0.52 tolerated(0.12) benign(0.284) TCGA-86-8279-01 14 70713206 70713206 C A ADAM21P1 RNA 0.40 TCGA-86-8279-01 14 80677839 80677839 C G DIO2 5'UTR 0.50 TCGA-86-8279-01 14 94962940 94962940 C T SERPINA12 Silent p.E225E 0.21 TCGA-86-8279-01 15 25213220 25213220 C A SNRPN 5'UTR 0.56 TCGA-86-8279-01 15 25423714 25423714 A T SNORD115-6 5'Flank 0.58 TCGA-86-8279-01 15 25442539 25442539 T A SNORD115-14 3'Flank 0.52 TCGA-86-8279-01 15 25467560 25467560 G T SNORD115-28 RNA 0.62 TCGA-86-8279-01 15 27765222 27765222 G T GABRG3 Missense_Mutation p.V273L 0.69 deleterious(0.03) probably_damaging(0.994) TCGA-86-8279-01 15 32917828 32917828 G T ARHGAP11A Missense_Mutation p.V286L 0.63 deleterious(0) benign(0.021) TCGA-86-8279-01 15 33988685 33988685 G T RYR3 Missense_Mutation p.G2043W 0.52 probably_damaging(0.994) TCGA-86-8279-01 15 38243501 38243501 G A TMCO5A 3'UTR 0.80 TCGA-86-8279-01 15 40599963 40599963 G T PLCB2 5'UTR 0.61 TCGA-86-8279-01 15 41804969 41804969 C T LTK Missense_Mutation p.V99M 0.15 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-86-8279-01 15 49309088 49309088 G C SECISBP2L Missense_Mutation p.A459G 0.39 deleterious(0.03) probably_damaging(0.998) TCGA-86-8279-01 15 50535440 50535440 C A HDC Missense_Mutation p.G381V 0.55 tolerated(0.1) probably_damaging(0.997) TCGA-86-8279-01 15 58919911 58919912 TG - ADAM10 Frame_Shift_Del p.N449Kfs*5 0.10 TCGA-86-8279-01 15 68582098 68582098 G C FEM1B Silent p.L134L 0.60 TCGA-86-8279-01 15 77406947 77406947 G C PEAK1 Missense_Mutation p.L1598V 0.68 deleterious(0) probably_damaging(0.999) TCGA-86-8279-01 16 11214514 11214514 G T CLEC16A Missense_Mutation p.G720V 0.33 deleterious(0) benign(0.424) TCGA-86-8279-01 16 14340802 14340802 A T MKL2 Missense_Mutation p.N562I 0.10 tolerated(0.09) benign(0.185) TCGA-86-8279-01 16 1470335 1470335 C A C16orf91 Missense_Mutation p.W261L 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.782) TCGA-86-8279-01 16 1509178 1509178 G A CLCN7 Missense_Mutation p.A202V 0.48 deleterious(0) possibly_damaging(0.58) TCGA-86-8279-01 16 20043592 20043592 C A GPR139 Missense_Mutation p.S176I 0.28 deleterious(0) possibly_damaging(0.541) TCGA-86-8279-01 16 20384416 20384416 A G PDILT Missense_Mutation p.I237T 0.40 tolerated(0.07) possibly_damaging(0.886) TCGA-86-8279-01 16 20442617 20442617 C A ACSM5 Missense_Mutation p.P428T 0.32 deleterious(0) probably_damaging(0.993) TCGA-86-8279-01 16 21973829 21973829 G T UQCRC2 Silent p.R127R 0.22 TCGA-86-8279-01 16 23713741 23713741 C A ERN2 Missense_Mutation p.V399L 0.30 tolerated(0.53) benign(0.06) TCGA-86-8279-01 16 24942513 24942513 T C ARHGAP17 Missense_Mutation p.S703G 0.40 tolerated_low_confidence(0.13) benign(0.153) TCGA-86-8279-01 16 27448847 27448847 C T IL21R Missense_Mutation p.S64F 0.26 tolerated(0.11) benign(0.125) TCGA-86-8279-01 16 27856365 27856365 C T GSG1L Missense_Mutation p.A190T 0.18 deleterious(0) possibly_damaging(0.794) TCGA-86-8279-01 16 2987316 2987316 G T FLYWCH1 Missense_Mutation p.D569Y 0.24 deleterious(0) probably_damaging(1) TCGA-86-8279-01 16 30516573 30516573 G T ITGAL Missense_Mutation p.K748N 0.50 tolerated(0.1) benign(0.026) TCGA-86-8279-01 16 30977325 30977325 G T SETD1A Missense_Mutation p.G708V 0.33 benign(0.39) TCGA-86-8279-01 16 31309182 31309182 G T ITGAM Silent p.V539V 0.23 TCGA-86-8279-01 16 3781862 3781862 C A CREBBP Missense_Mutation p.R1602L 0.10 unknown(0) TCGA-86-8279-01 16 3781863 3781863 G A CREBBP Missense_Mutation p.R1602C 0.10 unknown(0) TCGA-86-8279-01 16 48232080 48232080 A G ABCC11 Missense_Mutation p.I730T 0.20 deleterious(0.02) benign(0.285) TCGA-86-8279-01 16 49407957 49407957 A G C16orf78 Missense_Mutation p.E36G 0.12 deleterious(0) probably_damaging(0.994) TCGA-86-8279-01 16 57717956 57717956 A G GPR97 Missense_Mutation p.K332E 0.42 tolerated(0.74) benign(0.015) TCGA-86-8279-01 16 58554746 58554746 C A CNOT1 3'UTR 0.31 TCGA-86-8279-01 16 67321063 67321063 A T PLEKHG4 Missense_Mutation p.Q1029L 0.42 deleterious(0) probably_damaging(1) TCGA-86-8279-01 16 67865182 67865182 G A CENPT Missense_Mutation p.R214C 0.31 deleterious(0) possibly_damaging(0.629) TCGA-86-8279-01 16 67911713 67911713 A T EDC4 Nonsense_Mutation p.K287* 0.10 TCGA-86-8279-01 16 71683010 71683010 A C PHLPP2 Missense_Mutation p.L1252R 0.24 deleterious(0.04) possibly_damaging(0.901) TCGA-86-8279-01 16 74443752 74443752 C A CLEC18B Missense_Mutation p.M412I 0.21 tolerated_low_confidence(0.44) benign(0.001) TCGA-86-8279-01 16 81181793 81181793 G T PKD1L2 RNA 0.15 TCGA-86-8279-01 16 8862065 8862065 G T ABAT Missense_Mutation p.D207Y 0.43 deleterious(0.05) benign(0.082) TCGA-86-8279-01 16 89211809 89211809 G T ACSF3 Missense_Mutation p.D501Y 0.66 deleterious(0) probably_damaging(0.997) TCGA-86-8279-01 17 10355750 10355750 T A MYH4 Nonsense_Mutation p.K1111* 0.41 TCGA-86-8279-01 17 10355769 10355769 A T MYH4 Silent p.L1104L 0.46 TCGA-86-8279-01 17 11603164 11603164 T C DNAH9 Silent p.Y1663Y 0.67 TCGA-86-8279-01 17 1563823 1563823 T C PRPF8 Missense_Mutation p.H1563R 0.58 deleterious(0) probably_damaging(0.962) TCGA-86-8279-01 17 29550532 29550532 A T NF1 Nonsense_Mutation p.K598* 0.74 TCGA-86-8279-01 17 3119388 3119388 C A OR1A1 Silent p.P158P 0.70 TCGA-86-8279-01 17 37819108 37819108 G A STARD3 Missense_Mutation p.E429K 0.74 deleterious(0.01) probably_damaging(0.976) TCGA-86-8279-01 17 37866373 37866373 C T ERBB2 Silent p.R226R 0.67 TCGA-86-8279-01 17 38928068 38928068 G T KRT26 Missense_Mutation p.H100N 0.72 tolerated(0.39) benign(0.008) TCGA-86-8279-01 17 39619141 39619141 C A KRT32 Silent p.R386R 0.73 TCGA-86-8279-01 17 42855360 42855360 G T ADAM11 Missense_Mutation p.W704L 0.66 deleterious(0) possibly_damaging(0.862) TCGA-86-8279-01 17 56699148 56699148 C G TEX14 Splice_Site p.X140_splice 0.72 TCGA-86-8279-01 17 7479967 7479967 T C EIF4A1 Silent p.G157G 0.07 TCGA-86-8279-01 17 7578271 7578271 T C TP53 Missense_Mutation p.H193R 0.67 deleterious(0) probably_damaging(1) TCGA-86-8279-01 18 14522338 14522338 C A POTEC Missense_Mutation p.G442C 0.63 deleterious(0) probably_damaging(0.987) TCGA-86-8279-01 18 29102168 29102168 G T DSG2 Missense_Mutation p.D216Y 0.07 tolerated(0.16) possibly_damaging(0.452) TCGA-86-8279-01 18 30926185 30926185 A T CCDC178 Silent p.A216A 0.54 TCGA-86-8279-01 18 32446190 32446190 G T DTNA Intron 0.47 TCGA-86-8279-01 18 40503571 40503571 A G RIT2 Missense_Mutation p.V131A 0.54 deleterious(0.02) probably_damaging(0.999) TCGA-86-8279-01 18 48331523 48331523 C A MRO Splice_Site p.X157_splice 0.66 TCGA-86-8279-01 18 48593466 48593466 C T SMAD4 Missense_Mutation p.A406V 0.54 tolerated(0.09) probably_damaging(0.956) TCGA-86-8279-01 18 48593467 48593467 G T SMAD4 Silent p.A406A 0.54 TCGA-86-8279-01 18 52262228 52262228 C A DYNAP Nonsense_Mutation p.S65* 0.62 TCGA-86-8279-01 18 52921778 52921778 C A TCF4 Missense_Mutation p.G536C 0.52 deleterious(0) possibly_damaging(0.764) TCGA-86-8279-01 18 52921779 52921779 C G TCF4 Silent p.L535L 0.50 TCGA-86-8279-01 18 59195263 59195263 G A CDH20 Missense_Mutation p.E361K 0.60 deleterious(0.01) benign(0.11) TCGA-86-8279-01 18 61310415 61310415 C T SERPINB4 Missense_Mutation p.E68K 0.57 tolerated(0.89) benign(0.013) TCGA-86-8279-01 18 67696007 67696007 C G RTTN Missense_Mutation p.A1926P 0.73 deleterious(0.04) benign(0.348) TCGA-86-8279-01 18 8376515 8376515 G T PTPRM Missense_Mutation p.A1128S 0.64 deleterious(0.02) probably_damaging(0.936) TCGA-86-8279-01 19 10795228 10795228 G T ILF3 Intron 0.70 TCGA-86-8279-01 19 12187167 12187167 A T ZNF844 Missense_Mutation p.K411I 0.34 deleterious(0.01) benign(0.193) TCGA-86-8279-01 19 12867040 12867040 C A BEST2 Missense_Mutation p.A345D 0.33 deleterious(0.01) possibly_damaging(0.549) TCGA-86-8279-01 19 30935314 30935314 A T ZNF536 Missense_Mutation p.K282M 0.48 deleterious(0) probably_damaging(0.999) TCGA-86-8279-01 19 36236316 36236316 G T PSENEN 5'UTR 0.55 TCGA-86-8279-01 19 38903577 38903577 C G RASGRP4 Missense_Mutation p.R510P 0.73 tolerated(0.1) possibly_damaging(0.551) TCGA-86-8279-01 19 39899030 39899030 C G ZFP36 Missense_Mutation p.D230E 0.64 tolerated(0.2) possibly_damaging(0.47) TCGA-86-8279-01 19 40580207 40580207 T A ZNF780A 3'UTR 0.34 TCGA-86-8279-01 19 42621519 42621519 C T POU2F2 Splice_Site p.X63_splice 0.42 TCGA-86-8279-01 19 42813762 42813762 A T PRR19 Missense_Mutation p.Q9L 0.68 deleterious_low_confidence(0.01) benign(0.178) TCGA-86-8279-01 19 44844696 44844696 T C ZNF112 Splice_Site p.X6_splice 0.65 TCGA-86-8279-01 19 4499523 4499523 G C HDGFRP2 Missense_Mutation p.E537D 0.65 tolerated(0.12) benign(0.388) TCGA-86-8279-01 19 49261320 49261320 C A FGF21 Missense_Mutation p.P158H 0.72 tolerated(0.18) benign(0.276) TCGA-86-8279-01 19 49261321 49261321 C T FGF21 Silent p.P158P 0.71 TCGA-86-8279-01 19 49964104 49964104 C T ALDH16A1 Silent p.P175P 0.55 TCGA-86-8279-01 19 50017363 50017363 G A FCGRT Missense_Mutation p.E100K 0.33 tolerated(0.49) benign(0.077) TCGA-86-8279-01 19 51827009 51827009 G T IGLON5 Silent p.R84R 0.48 TCGA-86-8279-01 19 52002777 52002777 C A SIGLEC12 Missense_Mutation p.Q334H 0.42 tolerated(0.09) probably_damaging(0.977) TCGA-86-8279-01 19 52004599 52004599 C G SIGLEC12 Missense_Mutation p.W130S 0.62 deleterious(0.01) possibly_damaging(0.758) TCGA-86-8279-01 19 52146804 52146804 C G SIGLEC14 Missense_Mutation p.W378C 0.19 deleterious(0) probably_damaging(0.953) TCGA-86-8279-01 19 52147118 52147119 - T SIGLEC14 Frame_Shift_Ins p.I309Nfs*4 0.37 TCGA-86-8279-01 19 52272733 52272733 T G FPR2 Nonsense_Mutation p.Y274* 0.36 TCGA-86-8279-01 19 53668341 53668341 T A ZNF665 Missense_Mutation p.T468S 0.60 tolerated(1) benign(0.036) TCGA-86-8279-01 19 54212014 54212014 T A MIR518C RNA 0.56 TCGA-86-8279-01 19 54501528 54501528 G T CACNG6 Missense_Mutation p.G123W 0.44 deleterious(0) probably_damaging(1) TCGA-86-8279-01 19 56572862 56572862 G T NLRP5 Missense_Mutation p.D1191Y 0.59 deleterious(0.01) benign(0.421) TCGA-86-8279-01 19 58238781 58238781 G A ZNF671 Missense_Mutation p.A39V 0.25 tolerated(0.18) benign(0.007) TCGA-86-8279-01 19 58238782 58238782 C A ZNF671 Missense_Mutation p.A39S 0.19 tolerated(0.16) benign(0.073) TCGA-86-8279-01 19 6832113 6832113 G T VAV1 Missense_Mutation p.M470I 0.25 tolerated(0.14) benign(0.045) TCGA-86-8279-01 19 8807904 8807904 C A ACTL9 Missense_Mutation p.G383V 0.57 deleterious(0) probably_damaging(1) TCGA-86-8279-01 19 9056284 9056284 G T MUC16 Missense_Mutation p.P10388T 0.65 benign(0.003) TCGA-86-8279-01 19 9204429 9204429 G T OR1M1 Missense_Mutation p.G170V 0.37 tolerated(0.18) possibly_damaging(0.719) TCGA-86-8279-01 19 9271251 9271251 G A ZNF317 Silent p.Q310Q 0.70 TCGA-86-8279-01 1 101200161 101200161 G T VCAM1 Missense_Mutation p.W632C 0.54 deleterious(0.01) probably_damaging(0.964) TCGA-86-8279-01 1 103491138 103491138 T C COL11A1 Missense_Mutation p.N310S 0.41 benign(0.118) TCGA-86-8279-01 1 109268628 109268628 T A FNDC7 Splice_Site p.X371_splice 0.55 TCGA-86-8279-01 1 110589343 110589343 G T STRIP1 Missense_Mutation p.E486D 0.21 tolerated(0.05) probably_damaging(0.989) TCGA-86-8279-01 1 110589344 110589344 G T STRIP1 Nonsense_Mutation p.E487* 0.21 TCGA-86-8279-01 1 111435023 111435023 C - CD53 Frame_Shift_Del p.F40Lfs*26 0.37 TCGA-86-8279-01 1 11574578 11574578 G T PTCHD2 Missense_Mutation p.C483F 0.35 tolerated(0.2) benign(0.022) TCGA-86-8279-01 1 115828605 115828605 T C NGF 3'UTR 0.18 TCGA-86-8279-01 1 11866268 11866268 C A CLCN6 5'UTR 0.33 TCGA-86-8279-01 1 12408926 12408926 A G VPS13D Missense_Mutation p.E3039G 0.16 possibly_damaging(0.634) TCGA-86-8279-01 1 14107927 14107927 C T PRDM2 Missense_Mutation p.L1213F 0.10 unknown(0) TCGA-86-8279-01 1 150525555 150525555 G A ADAMTSL4 Missense_Mutation p.R87Q 0.54 tolerated(0.28) benign(0.027) TCGA-86-8279-01 1 152285414 152285414 G T FLG Missense_Mutation p.Q650K 0.28 benign(0.105) TCGA-86-8279-01 1 152659518 152659518 G T LCE2B Missense_Mutation p.G67W 0.29 deleterious_low_confidence(0.01) unknown(0) TCGA-86-8279-01 1 152659519 152659519 G T LCE2B Missense_Mutation p.G67V 0.29 tolerated_low_confidence(0.2) unknown(0) TCGA-86-8279-01 1 155450295 155450295 G T ASH1L Missense_Mutation p.S789Y 0.24 deleterious_low_confidence(0) possibly_damaging(0.862) TCGA-86-8279-01 1 158153965 158153965 T C CD1D 3'UTR 0.10 TCGA-86-8279-01 1 158435844 158435844 C T OR10K1 Missense_Mutation p.H165Y 0.35 tolerated(0.07) benign(0.012) TCGA-86-8279-01 1 159162393 159162393 G T CADM3 Silent p.L119L 0.24 TCGA-86-8279-01 1 159505365 159505365 C T OR10J5 Missense_Mutation p.V145M 0.29 tolerated(0.14) benign(0.189) TCGA-86-8279-01 1 159557998 159557998 G T APCS Missense_Mutation p.A58S 0.51 tolerated(0.5) possibly_damaging(0.838) TCGA-86-8279-01 1 161967648 161967648 G C OLFML2B Missense_Mutation p.P481A 0.49 tolerated(0.14) benign(0.103) TCGA-86-8279-01 1 164761875 164761875 G T PBX1 Missense_Mutation p.G137V 0.32 tolerated(0.05) probably_damaging(0.973) TCGA-86-8279-01 1 167096414 167096414 G A DUSP27 Silent p.Q682Q 0.45 TCGA-86-8279-01 1 167839517 167839517 G A ADCY10 Silent p.L532L 0.25 TCGA-86-8279-01 1 168282103 168282103 G T TBX19 Missense_Mutation p.G404C 0.29 tolerated_low_confidence(0.08) benign(0.01) TCGA-86-8279-01 1 173703194 173703194 G T KLHL20 Silent p.L122L 0.52 TCGA-86-8279-01 1 175063278 175063278 G T TNN Nonsense_Mutation p.E493* 0.55 TCGA-86-8279-01 1 175365805 175365805 C T TNR Missense_Mutation p.R372Q 0.48 tolerated(0.13) possibly_damaging(0.744) TCGA-86-8279-01 1 176903347 176903347 C G ASTN1 Missense_Mutation p.W871S 0.25 deleterious(0.01) probably_damaging(0.968) TCGA-86-8279-01 1 177199114 177199114 C G BRINP2 Silent p.V34V 0.27 TCGA-86-8279-01 1 177906631 177906631 C A SEC16B Missense_Mutation p.D741Y 0.35 deleterious(0.02) benign(0.048) TCGA-86-8279-01 1 179354374 179354374 T A AXDND1 Missense_Mutation p.M248K 0.48 deleterious(0) possibly_damaging(0.537) TCGA-86-8279-01 1 179638531 179638531 C T TDRD5 Missense_Mutation p.S951F 0.13 tolerated(0.07) benign(0.029) TCGA-86-8279-01 1 184765214 184765214 T C FAM129A Missense_Mutation p.I562V 0.14 tolerated(1) benign(0.008) TCGA-86-8279-01 1 186147884 186147884 A C HMCN1 Missense_Mutation p.H5427P 0.11 benign(0.011) TCGA-86-8279-01 1 19027164 19027164 C T PAX7 Silent p.R268R 0.20 TCGA-86-8279-01 1 19168274 19168274 A T TAS1R2 Missense_Mutation p.C514S 0.44 deleterious(0) probably_damaging(1) TCGA-86-8279-01 1 19175991 19175991 G A TAS1R2 Silent p.F437F 0.36 TCGA-86-8279-01 1 1961521 1961521 C A GABRD Missense_Mutation p.L387M 0.34 tolerated(0.25) possibly_damaging(0.888) TCGA-86-8279-01 1 196876582 196876582 T C CFHR4 Silent p.Y250Y 0.34 TCGA-86-8279-01 1 197298052 197298052 G T CRB1 Missense_Mutation p.A191S 0.23 tolerated(0.23) benign(0.21) TCGA-86-8279-01 1 198697528 198697528 C A PTPRC Missense_Mutation p.L594M 0.29 deleterious(0) probably_damaging(0.97) TCGA-86-8279-01 1 200945991 200945991 G T KIF21B Missense_Mutation p.H1452Q 0.50 deleterious(0) probably_damaging(0.997) TCGA-86-8279-01 1 201021749 201021749 C A CACNA1S Missense_Mutation p.G1297W 0.27 deleterious(0) probably_damaging(1) TCGA-86-8279-01 1 204135377 204135377 C A REN Silent p.L15L 0.48 TCGA-86-8279-01 1 204135378 204135378 A G REN Missense_Mutation p.L15P 0.48 tolerated(0.06) benign(0.445) TCGA-86-8279-01 1 210536201 210536201 G T HHAT Nonsense_Mutation p.E34* 0.42 TCGA-86-8279-01 1 215824105 215824105 G T USH2A Missense_Mutation p.S4724R 0.08 benign(0.049) TCGA-86-8279-01 1 218578521 218578521 G T TGFB2 Silent p.P147P 0.18 TCGA-86-8279-01 1 21940120 21940120 C A RAP1GAP Splice_Site p.X222_splice 0.06 TCGA-86-8279-01 1 222802039 222802039 A G MIA3 Missense_Mutation p.M493V 0.58 tolerated(0.62) benign(0.001) TCGA-86-8279-01 1 23236973 23236973 C A EPHB2 Silent p.R868R 0.20 TCGA-86-8279-01 1 232942262 232942262 G T MAP10 Missense_Mutation p.S498I 0.43 tolerated(0.08) benign(0.073) TCGA-86-8279-01 1 237895414 237895414 C A RYR2 Silent p.I3668I 0.30 TCGA-86-8279-01 1 237947435 237947435 C A RYR2 Missense_Mutation p.S4141R 0.57 probably_damaging(0.983) TCGA-86-8279-01 1 240256842 240256842 G A FMN2 Missense_Mutation p.G478D 0.29 unknown(0) TCGA-86-8279-01 1 246810648 246810648 G T CNST Missense_Mutation p.G382V 0.25 deleterious(0) possibly_damaging(0.89) TCGA-86-8279-01 1 247588782 247588782 G C NLRP3 Silent p.L679L 0.21 TCGA-86-8279-01 1 247655150 247655150 C T OR2W5 RNA 0.27 TCGA-86-8279-01 1 248004437 248004437 G T OR11L1 Silent p.T254T 0.53 TCGA-86-8279-01 1 248112405 248112405 T A OR2L8 Silent p.S82S 0.26 TCGA-86-8279-01 1 248309308 248309308 C A OR2M5 Missense_Mutation p.P287T 0.25 deleterious(0) probably_damaging(0.992) TCGA-86-8279-01 1 248344272 248344272 C G OR2M2 Missense_Mutation p.L329V 0.27 deleterious_low_confidence(0.04) unknown(0) TCGA-86-8279-01 1 248366945 248366945 A T OR2M3 Silent p.T192T 0.25 TCGA-86-8279-01 1 248487152 248487152 G C OR2M7 Missense_Mutation p.T240S 0.54 deleterious(0.02) possibly_damaging(0.777) TCGA-86-8279-01 1 248637141 248637141 C T OR2T3 Missense_Mutation p.L164F 0.10 tolerated(0.14) benign(0.046) TCGA-86-8279-01 1 248737569 248737569 G A OR2T34 Missense_Mutation p.L164F 0.12 tolerated(0.14) benign(0.046) TCGA-86-8279-01 1 26156320 26156320 C G MTFR1L Missense_Mutation p.L258V 0.12 tolerated(0.5) benign(0.212) TCGA-86-8279-01 1 29587140 29587140 C T PTPRU Missense_Mutation p.A290V 0.30 deleterious(0.01) possibly_damaging(0.566) TCGA-86-8279-01 1 32196626 32196626 A T BAI2 Silent p.A1385A 0.26 TCGA-86-8279-01 1 32206125 32206125 G C BAI2 Silent p.A604A 0.21 TCGA-86-8279-01 1 32206126 32206126 G T BAI2 Missense_Mutation p.A604D 0.21 deleterious(0.05) probably_damaging(0.999) TCGA-86-8279-01 1 3328607 3328607 G T PRDM16 Missense_Mutation p.D616Y 0.29 deleterious(0) probably_damaging(0.968) TCGA-86-8279-01 1 3410419 3410419 C G MEGF6 Missense_Mutation p.D1435H 0.27 deleterious(0) possibly_damaging(0.708) TCGA-86-8279-01 1 35223537 35223537 C A GJB5 Silent p.L202L 0.34 TCGA-86-8279-01 1 38483403 38483403 A T UTP11L Silent p.P63P 0.38 TCGA-86-8279-01 1 39800593 39800593 G T MACF1 Intron 0.05 TCGA-86-8279-01 1 42922946 42922946 G T PPCS Silent p.A179A 0.32 TCGA-86-8279-01 1 43316724 43316724 G T ZNF691 Missense_Mutation p.W63L 0.39 tolerated(0.65) benign(0.006) TCGA-86-8279-01 1 43779471 43779471 C A TIE1 Silent p.V747V 0.32 TCGA-86-8279-01 1 52499282 52499282 T A KTI12 Missense_Mutation p.D51V 0.47 deleterious(0) probably_damaging(0.993) TCGA-86-8279-01 1 6314000 6314000 C A GPR153 Silent p.V188V 0.19 TCGA-86-8279-01 1 70257801 70257801 G C LRRC7 Missense_Mutation p.A89P 0.36 deleterious(0) probably_damaging(0.998) TCGA-86-8279-01 1 71512421 71512421 C A PTGER3 Silent p.T280T 0.34 TCGA-86-8279-01 1 78478937 78478937 C A DNAJB4 Missense_Mutation p.S138R 0.22 tolerated(0.26) benign(0.001) TCGA-86-8279-01 1 7887624 7887624 C A PER3 Missense_Mutation p.L871M 0.29 deleterious(0.02) possibly_damaging(0.86) TCGA-86-8279-01 1 79107195 79107195 G C IFI44L Missense_Mutation p.E409Q 0.10 deleterious(0.04) possibly_damaging(0.794) TCGA-86-8279-01 1 86361567 86361567 C T COL24A1 Missense_Mutation p.G966R 0.47 deleterious(0) probably_damaging(0.957) TCGA-86-8279-01 1 86591212 86591212 G T COL24A1 Silent p.P269P 0.35 TCGA-86-8279-01 1 86907205 86907205 C A CLCA2 Missense_Mutation p.D489E 0.37 deleterious(0.03) possibly_damaging(0.761) TCGA-86-8279-01 1 95311020 95311020 G T SLC44A3 Nonsense_Mutation p.G358* 0.31 TCGA-86-8279-01 20 1552431 1552431 A G SIRPB1 Missense_Mutation p.I229T 0.63 deleterious(0) benign(0.04) TCGA-86-8279-01 20 17349903 17349903 C A PCSK2 Missense_Mutation p.P175Q 0.66 deleterious(0.01) probably_damaging(0.958) TCGA-86-8279-01 20 30584902 30584902 C A XKR7 Missense_Mutation p.P461H 0.31 tolerated(0.05) possibly_damaging(0.592) TCGA-86-8279-01 20 31572964 31572964 C G SUN5 Missense_Mutation p.V309L 0.40 deleterious(0.01) possibly_damaging(0.578) TCGA-86-8279-01 20 33068415 33068415 T C ITCH Silent p.H651H 0.38 TCGA-86-8279-01 20 35517794 35517794 C A TLDC2 3'UTR 0.41 TCGA-86-8279-01 20 37353363 37353363 C A SLC32A1 5'UTR 0.32 TCGA-86-8279-01 20 37356830 37356830 G T SLC32A1 Missense_Mutation p.G376C 0.13 deleterious(0.02) benign(0.16) TCGA-86-8279-01 20 43384653 43384653 T C RIMS4 3'UTR 0.50 TCGA-86-8279-01 20 45354080 45354080 G T SLC2A10 Silent p.L135L 0.39 TCGA-86-8279-01 20 5283158 5283158 A T PROKR2 Missense_Mutation p.F228Y 0.14 deleterious(0) possibly_damaging(0.868) TCGA-86-8279-01 20 55021021 55021021 C A CASS4 Missense_Mutation p.D175E 0.17 deleterious(0) probably_damaging(0.995) TCGA-86-8279-01 20 56735864 56735864 C A C20orf85 Missense_Mutation p.Q134K 0.32 deleterious(0.02) possibly_damaging(0.465) TCGA-86-8279-01 20 57766224 57766224 C A ZNF831 Silent p.P50P 0.42 TCGA-86-8279-01 20 60578914 60578914 C A TAF4 Missense_Mutation p.K748N 0.12 benign(0.444) TCGA-86-8279-01 20 62039866 62039866 C A KCNQ2 Missense_Mutation p.G596V 0.50 deleterious(0) possibly_damaging(0.809) TCGA-86-8279-01 20 62705381 62705381 C T RGS19 Missense_Mutation p.R160H 0.25 tolerated(0.06) probably_damaging(0.963) TCGA-86-8279-01 20 62871769 62871769 A T MYT1 Missense_Mutation p.I1112F 0.56 probably_damaging(0.997) TCGA-86-8279-01 20 8713909 8713909 G T PLCB1 Missense_Mutation p.G638V 0.65 deleterious(0) probably_damaging(1) TCGA-86-8279-01 21 31988819 31988819 C A KRTAP20-1 Missense_Mutation p.L16I 0.33 unknown(0) TCGA-86-8279-01 21 43863428 43863428 G T UBASH3A Silent p.A546A 0.37 TCGA-86-8279-01 21 44441491 44441491 C G PKNOX1 Missense_Mutation p.P267A 0.20 deleterious(0) probably_damaging(0.994) TCGA-86-8279-01 21 46074508 46074508 C A KRTAP12-4 Silent p.S8S 0.64 TCGA-86-8279-01 21 47423939 47423939 C T COL6A1 3'UTR 0.18 TCGA-86-8279-01 21 47531920 47531920 A G COL6A2 Missense_Mutation p.Y48C 0.44 deleterious(0) probably_damaging(0.992) TCGA-86-8279-01 21 47556354 47556354 C A FTCD 3'UTR 0.35 TCGA-86-8279-01 22 18364057 18364057 C T MICAL3 Intron 0.34 TCGA-86-8279-01 22 22843039 22843039 C G ZNF280B Missense_Mutation p.V229L 0.24 tolerated(0.12) benign(0.039) TCGA-86-8279-01 22 39104848 39104848 A T GTPBP1 Splice_Site p.X65_splice 0.55 TCGA-86-8279-01 22 40036998 40036998 G T CACNA1I Missense_Mutation p.Q289H 0.34 tolerated(0.23) probably_damaging(0.919) TCGA-86-8279-01 22 40036999 40036999 G T CACNA1I Missense_Mutation p.G290C 0.32 deleterious(0) probably_damaging(0.999) TCGA-86-8279-01 22 40061947 40061947 C A CACNA1I Nonsense_Mutation p.S1347* 0.59 TCGA-86-8279-01 22 40139605 40139605 T A ENTHD1 3'UTR 0.55 TCGA-86-8279-01 22 40574054 40574054 A G TNRC6B 5'UTR 0.23 TCGA-86-8279-01 2 101644780 101644780 G T TBC1D8 Silent p.I764I 0.17 TCGA-86-8279-01 2 102954774 102954774 C T IL1RL1 Missense_Mutation p.A17V 0.13 tolerated(0.81) benign(0.009) TCGA-86-8279-01 2 108475927 108475927 C A RGPD4 Silent p.P517P 0.12 TCGA-86-8279-01 2 1094073 1094073 C - SNTG2 Frame_Shift_Del p.S101* 0.28 TCGA-86-8279-01 2 112779952 112779952 G T MERTK Nonsense_Mutation p.E823* 0.23 TCGA-86-8279-01 2 113514482 113514482 C A CKAP2L Missense_Mutation p.D156Y 0.11 deleterious(0.02) benign(0.023) TCGA-86-8279-01 2 116283549 116283549 G T DPP10 Splice_Site p.X151_splice 0.16 TCGA-86-8279-01 2 133543134 133543134 G T NCKAP5 Missense_Mutation p.P417H 0.23 deleterious(0) probably_damaging(0.982) TCGA-86-8279-01 2 139316870 139316870 A G SPOPL Missense_Mutation p.N226S 0.16 tolerated(0.4) benign(0.006) TCGA-86-8279-01 2 139316875 139316875 A G SPOPL Missense_Mutation p.M228V 0.16 deleterious(0) possibly_damaging(0.629) TCGA-86-8279-01 2 141806558 141806558 C T LRP1B Missense_Mutation p.D596N 0.16 possibly_damaging(0.822) TCGA-86-8279-01 2 141812786 141812786 C A LRP1B Missense_Mutation p.G484V 0.62 probably_damaging(0.953) TCGA-86-8279-01 2 144008085 144008085 T C ARHGAP15 Silent p.T130T 0.14 TCGA-86-8279-01 2 144460993 144460993 C T ARHGAP15 Nonsense_Mutation p.Q382* 0.11 TCGA-86-8279-01 2 155711615 155711616 - T KCNJ3 Frame_Shift_Ins p.L433Ffs*22 0.13 TCGA-86-8279-01 2 157182339 157182339 G T NR4A2 Missense_Mutation p.R572S 0.54 deleterious(0) probably_damaging(1) TCGA-86-8279-01 2 160043511 160043511 G T TANC1 Missense_Mutation p.R906S 0.50 deleterious(0) probably_damaging(0.998) TCGA-86-8279-01 2 166245204 166245204 C A SCN2A Missense_Mutation p.L1630I 0.42 deleterious(0) probably_damaging(0.91) TCGA-86-8279-01 2 167301481 167301481 A G SCN7A Silent p.L473L 0.17 TCGA-86-8279-01 2 167322376 167322376 G T SCN7A Missense_Mutation p.N262K 0.50 tolerated(0.06) benign(0.046) TCGA-86-8279-01 2 170030431 170030431 C A LRP2 Missense_Mutation p.C3671F 0.10 probably_damaging(1) TCGA-86-8279-01 2 17836585 17836585 C A VSNL1 Missense_Mutation p.T167K 0.57 deleterious(0.03) benign(0.183) TCGA-86-8279-01 2 179457718 179457718 T A TTN Missense_Mutation p.S19710C 0.14 TCGA-86-8279-01 2 179604906 179604906 G C TTN Missense_Mutation p.P4352A 0.18 TCGA-86-8279-01 2 17997937 17997937 C A MSGN1 Missense_Mutation p.P51Q 0.11 deleterious(0) possibly_damaging(0.617) TCGA-86-8279-01 2 17998180 17998180 G T MSGN1 Missense_Mutation p.R132M 0.50 deleterious(0) probably_damaging(1) TCGA-86-8279-01 2 1842969 1842969 C A MYT1L Missense_Mutation p.G1009V 0.24 deleterious(0) probably_damaging(1) TCGA-86-8279-01 2 185731139 185731139 A T ZNF804A Missense_Mutation p.D52V 0.12 deleterious(0) probably_damaging(0.987) TCGA-86-8279-01 2 188243760 188243760 T A CALCRL Splice_Site p.X137_splice 0.12 TCGA-86-8279-01 2 196722178 196722178 T A DNAH7 Silent p.V2779V 0.17 TCGA-86-8279-01 2 198508892 198508892 A T RFTN2 Missense_Mutation p.L143Q 0.55 deleterious(0) probably_damaging(1) TCGA-86-8279-01 2 198571610 198571610 A T MARS2 Missense_Mutation p.K494M 0.15 deleterious(0) possibly_damaging(0.572) TCGA-86-8279-01 2 211503931 211503931 A G CPS1 Missense_Mutation p.N969D 0.19 deleterious(0.02) benign(0.392) TCGA-86-8279-01 2 215843708 215843708 G C ABCA12 Missense_Mutation p.I1599M 0.20 deleterious(0) probably_damaging(0.998) TCGA-86-8279-01 2 216285400 216285400 G A FN1 Silent p.P557P 0.47 TCGA-86-8279-01 2 216285401 216285401 G T FN1 Missense_Mutation p.P557H 0.46 deleterious(0.01) probably_damaging(1) TCGA-86-8279-01 2 227915798 227915798 C A COL4A4 Silent p.G1015G 0.09 TCGA-86-8279-01 2 232326413 232326413 C T NCL Missense_Mutation p.D151N 0.63 unknown(0) TCGA-86-8279-01 2 233347298 233347298 G A ECEL1 Missense_Mutation p.A569V 0.37 tolerated(0.06) possibly_damaging(0.64) TCGA-86-8279-01 2 233351040 233351040 G T ECEL1 Silent p.A108A 0.70 TCGA-86-8279-01 2 238289823 238289823 C A COL6A3 Silent p.R544R 0.67 TCGA-86-8279-01 2 238725767 238725767 A T RBM44 Missense_Mutation p.S70C 0.70 deleterious(0.05) benign(0.229) TCGA-86-8279-01 2 238973025 238973025 G T SCLY Silent p.T47T 0.78 TCGA-86-8279-01 2 27746354 27746354 G T GCKR 3'UTR 0.39 TCGA-86-8279-01 2 28755029 28755029 A T PLB1 Missense_Mutation p.S175C 0.46 deleterious(0.02) possibly_damaging(0.88) TCGA-86-8279-01 2 29404702 29404702 G C CLIP4 Silent p.P687P 0.16 TCGA-86-8279-01 2 29448358 29448358 G T ALK Silent p.A1047A 0.57 TCGA-86-8279-01 2 32718708 32718708 G T BIRC6 Missense_Mutation p.K2814N 0.15 possibly_damaging(0.858) TCGA-86-8279-01 2 32740674 32740674 A G BIRC6 Missense_Mutation p.H3729R 0.55 benign(0.019) TCGA-86-8279-01 2 3623248 3623248 G T RPS7 Missense_Mutation p.D17Y 0.17 deleterious(0) benign(0.298) TCGA-86-8279-01 2 46228649 46228649 A C PRKCE Silent p.P310P 0.21 TCGA-86-8279-01 2 47601172 47601172 A C EPCAM Missense_Mutation p.E137A 0.09 deleterious(0) benign(0.285) TCGA-86-8279-01 2 51255106 51255106 C A NRXN1 Silent p.T102T 0.19 TCGA-86-8279-01 2 55601999 55601999 G A CCDC88A Silent p.I98I 0.12 TCGA-86-8279-01 2 63282684 63282684 G A OTX1 Missense_Mutation p.G100R 0.65 deleterious(0.04) benign(0.026) TCGA-86-8279-01 2 66795971 66795971 T C MEIS1 Intron 0.54 TCGA-86-8279-01 2 69098193 69098193 G T BMP10 Missense_Mutation p.P100T 0.11 deleterious(0) probably_damaging(0.998) TCGA-86-8279-01 2 71747314 71747314 G T DYSF Missense_Mutation p.V337L 0.16 tolerated(0.08) benign(0.077) TCGA-86-8279-01 2 72359420 72359420 C A CYP26B1 Missense_Mutation p.G492V 0.56 tolerated(0.35) benign(0.392) TCGA-86-8279-01 2 79253955 79253955 G T REG3G Missense_Mutation p.D65Y 0.17 deleterious(0.03) possibly_damaging(0.593) TCGA-86-8279-01 2 84518074 84518074 C A FUNDC2P2 RNA 0.53 TCGA-86-8279-01 2 90060900 90060900 G T IGKV6D-21 Missense_Mutation p.G83C 0.10 deleterious(0) probably_damaging(1) TCGA-86-8279-01 2 97400163 97400163 T A LMAN2L Missense_Mutation p.K136M 0.16 deleterious(0.02) probably_damaging(0.993) TCGA-86-8279-01 2 97483147 97483147 C T CNNM3 Missense_Mutation p.P378L 0.53 deleterious(0.01) probably_damaging(0.999) TCGA-86-8279-01 2 98382580 98382580 T A TMEM131 Missense_Mutation p.S1574C 0.56 tolerated_low_confidence(0.08) possibly_damaging(0.832) TCGA-86-8279-01 3 108474491 108474491 A T RETNLB 3'UTR 0.25 TCGA-86-8279-01 3 124952231 124952231 C A ZNF148 Missense_Mutation p.V447F 0.64 deleterious(0.03) possibly_damaging(0.897) TCGA-86-8279-01 3 127394816 127394816 C G ABTB1 Missense_Mutation p.A60G 0.44 deleterious(0) probably_damaging(1) TCGA-86-8279-01 3 128060086 128060086 A C EEFSEC Missense_Mutation p.K266T 0.71 deleterious(0) probably_damaging(0.99) TCGA-86-8279-01 3 130282201 130282201 T A COL6A6 Nonsense_Mutation p.Y118* 0.60 TCGA-86-8279-01 3 131068597 131068597 C T NEK11 Missense_Mutation p.P639S 0.61 tolerated_low_confidence(0.35) benign(0.003) TCGA-86-8279-01 3 133894458 133894458 C A RYK Missense_Mutation p.D525Y 0.12 deleterious(0) probably_damaging(1) TCGA-86-8279-01 3 141497148 141497148 G T GRK7 Missense_Mutation p.D8Y 0.65 deleterious(0) probably_damaging(0.935) TCGA-86-8279-01 3 143708572 143708572 G T C3orf58 Silent p.R394R 0.63 TCGA-86-8279-01 3 150421644 150421644 C T FAM194A Silent p.G14G 0.49 TCGA-86-8279-01 3 160130174 160130174 G A SMC4 Missense_Mutation p.A305T 0.43 deleterious(0) probably_damaging(0.99) TCGA-86-8279-01 3 16237423 16237423 C T GALNT15 Silent p.L232L 0.76 TCGA-86-8279-01 3 167000040 167000040 A T ZBBX Missense_Mutation p.L747Q 0.64 deleterious(0.04) possibly_damaging(0.604) TCGA-86-8279-01 3 167183274 167183274 T A SERPINI2 Silent p.T222T 0.70 TCGA-86-8279-01 3 17255708 17255708 T C TBC1D5 Silent p.R603R 0.55 TCGA-86-8279-01 3 179076728 179076728 G A MFN1 Missense_Mutation p.G117R 0.60 deleterious(0) possibly_damaging(0.651) TCGA-86-8279-01 3 179525598 179525598 G T PEX5L Missense_Mutation p.L514I 0.72 deleterious(0.01) probably_damaging(1) TCGA-86-8279-01 3 186335129 186335129 C T AHSG Missense_Mutation p.A188V 0.72 deleterious(0.01) possibly_damaging(0.465) TCGA-86-8279-01 3 191078868 191078868 G C CCDC50 Missense_Mutation p.D84H 0.72 deleterious(0) probably_damaging(0.997) TCGA-86-8279-01 3 19575220 19575220 C T KCNH8 Missense_Mutation p.L985F 0.71 tolerated_low_confidence(0.34) benign(0.001) TCGA-86-8279-01 3 2942504 2942504 G T CNTN4 Missense_Mutation p.R359L 0.69 deleterious(0.01) benign(0.157) TCGA-86-8279-01 3 36873368 36873368 A G TRANK1 Missense_Mutation p.M2525T 0.36 deleterious(0) possibly_damaging(0.623) TCGA-86-8279-01 3 54537664 54537664 C G CACNA2D3 Missense_Mutation p.T176R 0.21 deleterious(0) probably_damaging(0.997) TCGA-86-8279-01 3 75476983 75476983 T A FAM86DP RNA 0.70 TCGA-86-8279-01 3 87027741 87027741 G T VGLL3 Missense_Mutation p.A113D 0.33 deleterious(0.03) possibly_damaging(0.685) TCGA-86-8279-01 4 114251454 114251454 A T ANK2 Nonsense_Mutation p.R985* 0.53 TCGA-86-8279-01 4 120241895 120241895 C A FABP2 Missense_Mutation p.R57L 0.29 deleterious(0) possibly_damaging(0.498) TCGA-86-8279-01 4 125591842 125591842 C T ANKRD50 Missense_Mutation p.E864K 0.25 tolerated(0.89) benign(0.027) TCGA-86-8279-01 4 155156393 155156393 C A DCHS2 Missense_Mutation p.R2682S 0.69 deleterious(0) probably_damaging(0.985) TCGA-86-8279-01 4 155527885 155527885 A T FGG Silent p.A367A 0.63 TCGA-86-8279-01 4 185553509 185553509 G T CASP3 Missense_Mutation p.L74I 0.12 tolerated(0.09) benign(0.034) TCGA-86-8279-01 4 25351147 25351147 G T ZCCHC4 Nonsense_Mutation p.E265* 0.32 TCGA-86-8279-01 4 55972894 55972894 A T KDR Missense_Mutation p.V499D 0.45 tolerated(0.47) benign(0.088) TCGA-86-8279-01 4 70080208 70080208 G T UGT2B11 Missense_Mutation p.P78H 0.68 tolerated(0.06) probably_damaging(0.972) TCGA-86-8279-01 4 70080209 70080209 G T UGT2B11 Missense_Mutation p.P78T 0.67 deleterious(0.05) possibly_damaging(0.794) TCGA-86-8279-01 4 74719530 74719530 G T PF4V1 Missense_Mutation p.C44F 0.65 deleterious(0) probably_damaging(1) TCGA-86-8279-01 4 780377 780377 C A CPLX1 Missense_Mutation p.G106V 0.48 deleterious(0.01) probably_damaging(1) TCGA-86-8279-01 4 85661360 85661360 C G WDFY3 Missense_Mutation p.L2148F 0.19 tolerated(0.13) benign(0.242) TCGA-86-8279-01 4 86874 86874 A T Z95704.2 RNA 0.37 TCGA-86-8279-01 5 115298329 115298329 C G AQPEP Silent p.S5S 0.13 TCGA-86-8279-01 5 120021899 120021899 C A PRR16 Missense_Mutation p.P114H 0.61 tolerated_low_confidence(0.52) possibly_damaging(0.853) TCGA-86-8279-01 5 1210683 1210683 C A SLC6A19 Missense_Mutation p.N156K 0.34 deleterious(0.04) benign(0.082) TCGA-86-8279-01 5 121188192 121188192 C A FTMT Missense_Mutation p.H178Q 0.69 deleterious(0.02) probably_damaging(0.979) TCGA-86-8279-01 5 127627286 127627286 G T FBN2 Missense_Mutation p.P2076Q 0.67 tolerated(0.1) possibly_damaging(0.841) TCGA-86-8279-01 5 129072927 129072927 C A ADAMTS19 3'UTR 0.53 TCGA-86-8279-01 5 130840371 130840371 T C RAPGEF6 Missense_Mutation p.E401G 0.69 deleterious(0) probably_damaging(0.998) TCGA-86-8279-01 5 136961545 136961545 C A KLHL3 Silent p.G544G 0.60 TCGA-86-8279-01 5 140557699 140557699 G A PCDHB8 Silent p.A28A 0.21 TCGA-86-8279-01 5 140798910 140798910 A T PCDHGB7 Missense_Mutation p.D495V 0.58 deleterious(0) probably_damaging(0.984) TCGA-86-8279-01 5 140865865 140865865 G T PCDHGC4 Missense_Mutation p.Q375H 0.33 deleterious(0) benign(0.055) TCGA-86-8279-01 5 14498234 14498234 C A TRIO Missense_Mutation p.T2695K 0.26 unknown(0) TCGA-86-8279-01 5 145613128 145613128 G T RBM27 Silent p.G322G 0.70 TCGA-86-8279-01 5 145849133 145849133 A G TCERG1 Missense_Mutation p.I409V 0.25 tolerated(0.28) unknown(0) TCGA-86-8279-01 5 148206922 148206922 C T ADRB2 Silent p.A176A 0.60 TCGA-86-8279-01 5 149460370 149460370 G C CSF1R Missense_Mutation p.D89E 0.31 tolerated(0.38) benign(0.003) TCGA-86-8279-01 5 151055697 151055697 G T SPARC Missense_Mutation p.A18D 0.38 deleterious_low_confidence(0.01) probably_damaging(0.921) TCGA-86-8279-01 5 169141205 169141205 C A DOCK2 Silent p.L611L 0.29 TCGA-86-8279-01 5 175581906 175581906 G T RP11-844P9.2 RNA 0.24 TCGA-86-8279-01 5 176083833 176083833 C T TSPAN17 Intron 0.64 TCGA-86-8279-01 5 180166823 180166823 G T OR2Y1 Missense_Mutation p.P79H 0.55 deleterious(0) probably_damaging(1) TCGA-86-8279-01 5 23522776 23522776 C A PRDM9 Missense_Mutation p.P222T 0.57 deleterious(0.03) possibly_damaging(0.584) TCGA-86-8279-01 5 23522777 23522777 C A PRDM9 Missense_Mutation p.P222H 0.59 deleterious(0) possibly_damaging(0.862) TCGA-86-8279-01 5 34008126 34008126 G A AMACR 5'UTR 0.07 TCGA-86-8279-01 5 36608551 36608551 C A SLC1A3 Missense_Mutation p.P9H 0.07 tolerated_low_confidence(0.15) benign(0.422) TCGA-86-8279-01 5 40834631 40834631 G C RPL37 Nonsense_Mutation p.Y27* 0.17 TCGA-86-8279-01 5 43295893 43295893 C A HMGCS1 Missense_Mutation p.R289I 0.32 tolerated(0.09) benign(0.002) TCGA-86-8279-01 5 58295355 58295355 T A PDE4D Intron 0.17 TCGA-86-8279-01 5 64079705 64079705 G T CWC27 Missense_Mutation p.V99F 0.61 deleterious(0) probably_damaging(0.996) TCGA-86-8279-01 5 74059507 74059507 T A GFM2 Missense_Mutation p.N21Y 0.30 tolerated_low_confidence(0.19) benign(0.071) TCGA-86-8279-01 6 106554881 106554881 C A PRDM1 Silent p.A666A 0.43 TCGA-86-8279-01 6 108042040 108042040 C A SCML4 Silent p.G280G 0.13 TCGA-86-8279-01 6 112386141 112386141 C A WISP3 Nonsense_Mutation p.S195* 0.54 TCGA-86-8279-01 6 117128102 117128102 C T GPRC6A Missense_Mutation p.V256I 0.13 tolerated(0.11) benign(0.005) TCGA-86-8279-01 6 117704539 117704539 T C ROS1 Missense_Mutation p.R813G 0.14 deleterious(0) probably_damaging(0.999) TCGA-86-8279-01 6 123673700 123673700 G T TRDN Silent p.T451T 0.10 TCGA-86-8279-01 6 130454753 130454753 G T L3MBTL3 Missense_Mutation p.W708L 0.42 deleterious(0) benign(0.397) TCGA-86-8279-01 6 133827351 133827351 T A EYA4 Intron 0.65 TCGA-86-8279-01 6 133836515 133836515 G T EYA4 Missense_Mutation p.G520C 0.38 deleterious(0.02) possibly_damaging(0.646) TCGA-86-8279-01 6 136564102 136564102 G A MTFR2 Missense_Mutation p.L60F 0.29 tolerated(0.68) benign(0.048) TCGA-86-8279-01 6 137525554 137525554 C A IFNGR1 Missense_Mutation p.G154V 0.15 deleterious(0.01) possibly_damaging(0.865) TCGA-86-8279-01 6 13978253 13978253 G T RNF182 3'UTR 0.58 TCGA-86-8279-01 6 144263529 144263529 G T PLAGL1 Missense_Mutation p.H142N 0.23 deleterious(0) probably_damaging(0.995) TCGA-86-8279-01 6 151673837 151673837 T A AKAP12 Silent p.I1437I 0.48 TCGA-86-8279-01 6 152501431 152501431 T A SYNE1 Splice_Site p.X7768_splice 0.18 TCGA-86-8279-01 6 152716775 152716775 A G SYNE1 Missense_Mutation p.W2530R 0.09 probably_damaging(0.945) TCGA-86-8279-01 6 159657323 159657323 C G FNDC1 Missense_Mutation p.I1348M 0.16 deleterious(0) unknown(0) TCGA-86-8279-01 6 160237618 160237618 C T PNLDC1 Silent p.L357L 0.14 TCGA-86-8279-01 6 165713955 165713955 C A C6orf118 Silent p.T258T 0.17 TCGA-86-8279-01 6 166574347 166574347 C T T Missense_Mutation p.A338T 0.35 tolerated(0.87) benign(0.001) TCGA-86-8279-01 6 169637752 169637752 C A THBS2 Missense_Mutation p.R423L 0.10 deleterious(0) probably_damaging(0.946) TCGA-86-8279-01 6 24448431 24448431 G A GPLD1 Silent p.A484A 0.10 TCGA-86-8279-01 6 27100832 27100832 G C HIST1H2AG 5'UTR 0.13 TCGA-86-8279-01 6 27879623 27879623 G C OR2B2 Missense_Mutation p.Q159E 0.70 tolerated(0.08) possibly_damaging(0.665) TCGA-86-8279-01 6 29395062 29395062 C A OR11A1 Missense_Mutation p.M119I 0.21 deleterious(0) probably_damaging(0.988) TCGA-86-8279-01 6 29556136 29556136 T C OR2H2 Missense_Mutation p.C139R 0.70 deleterious(0) probably_damaging(1) TCGA-86-8279-01 6 30140138 30140138 C A TRIM15 3'UTR 0.68 TCGA-86-8279-01 6 30514484 30514484 C A GNL1 Missense_Mutation p.S524I 0.69 deleterious(0.02) benign(0.14) TCGA-86-8279-01 6 32007947 32007947 T C CYP21A2 Missense_Mutation p.S302P 0.10 deleterious(0.02) probably_damaging(0.943) TCGA-86-8279-01 6 32011660 32011660 T A TNXB Missense_Mutation p.Q228L 0.52 tolerated(0.15) probably_damaging(0.996) TCGA-86-8279-01 6 32020582 32020582 G A TNXB Nonsense_Mutation p.Q2992* 0.58 TCGA-86-8279-01 6 32134378 32134378 C T EGFL8 Missense_Mutation p.R69C 0.63 deleterious(0) probably_damaging(0.967) TCGA-86-8279-01 6 32138884 32138884 T C AGPAT1 Intron 0.69 TCGA-86-8279-01 6 33135284 33135284 C A COL11A2 Silent p.P1261P 0.70 TCGA-86-8279-01 6 33247007 33247007 G C WDR46 3'UTR 0.05 TCGA-86-8279-01 6 33372691 33372691 G T KIFC1 Silent p.R273R 0.08 TCGA-86-8279-01 6 33372692 33372692 C T KIFC1 Nonsense_Mutation p.Q274* 0.07 TCGA-86-8279-01 6 43227001 43227001 C G TTBK1 Missense_Mutation p.I414M 0.59 possibly_damaging(0.75) TCGA-86-8279-01 6 46135985 46135985 A C ENPP5 Missense_Mutation p.F5L 0.47 tolerated(0.89) benign(0) TCGA-86-8279-01 6 4935982 4935982 G T CDYL Nonsense_Mutation p.E309* 0.10 TCGA-86-8279-01 6 51484223 51484223 G C PKHD1 Missense_Mutation p.R3961G 0.15 tolerated_low_confidence(0.3) benign(0) TCGA-86-8279-01 6 51656068 51656068 T C PKHD1 Silent p.A2802A 0.06 TCGA-86-8279-01 6 55924888 55924888 C G COL21A1 Missense_Mutation p.G846R 0.59 deleterious(0) possibly_damaging(0.904) TCGA-86-8279-01 6 56473632 56473632 T C DST Intron 0.63 TCGA-86-8279-01 6 56480682 56480682 C A DST Intron 0.21 TCGA-86-8279-01 6 56483372 56483372 C A DST Intron 0.06 TCGA-86-8279-01 6 64416653 64416653 A G PHF3 Missense_Mutation p.T1200A 0.52 tolerated(0.42) benign(0.161) TCGA-86-8279-01 6 73110195 73110195 C - RIMS1 Intron 0.23 TCGA-86-8279-01 6 75797413 75797413 C A COL12A1 Missense_Mutation p.G3021C 0.46 probably_damaging(1) TCGA-86-8279-01 6 7585464 7585464 A T DSP Missense_Mutation p.T2657S 0.13 probably_damaging(0.995) TCGA-86-8279-01 6 75861583 75861583 C G COL12A1 Missense_Mutation p.G1334R 0.16 probably_damaging(1) TCGA-86-8279-01 6 84291979 84291979 G T SNAP91 Missense_Mutation p.T704K 0.17 tolerated(0.89) possibly_damaging(0.827) TCGA-86-8279-01 6 88127998 88127998 G T C6ORF165 Missense_Mutation p.S235I 0.15 tolerated(0.18) benign(0.027) TCGA-86-8279-01 7 100086204 100086204 C A NYAP1 Missense_Mutation p.S287Y 0.09 deleterious(0.01) possibly_damaging(0.814) TCGA-86-8279-01 7 100771710 100771710 G A SERPINE1 Silent p.L12L 0.39 TCGA-86-8279-01 7 100771750 100771750 C A SERPINE1 Missense_Mutation p.H26N 0.20 tolerated(0.43) benign(0.001) TCGA-86-8279-01 7 103276725 103276725 G A RELN Missense_Mutation p.R754W 0.12 deleterious(0.01) probably_damaging(0.947) TCGA-86-8279-01 7 107790203 107790203 G C NRCAM 3'UTR 0.20 TCGA-86-8279-01 7 120764465 120764465 A T CPED1 Missense_Mutation p.K333N 0.06 deleterious(0) probably_damaging(0.96) TCGA-86-8279-01 7 121679536 121679536 A T PTPRZ1 Missense_Mutation p.D1844V 0.13 deleterious(0) probably_damaging(0.909) TCGA-86-8279-01 7 121680976 121680976 T A PTPRZ1 Missense_Mutation p.V1915E 0.45 deleterious(0) probably_damaging(0.999) TCGA-86-8279-01 7 123594078 123594078 C A SPAM1 Missense_Mutation p.P152T 0.14 deleterious(0) probably_damaging(1) TCGA-86-8279-01 7 127014600 127014600 T C ZNF800 Missense_Mutation p.I264V 0.24 tolerated(0.13) possibly_damaging(0.847) TCGA-86-8279-01 7 128493863 128493863 C A FLNC Missense_Mutation p.S2152R 0.14 deleterious(0) probably_damaging(0.979) TCGA-86-8279-01 7 136588026 136588026 G T CHRM2 Intron 0.19 TCGA-86-8279-01 7 136700972 136700972 C A CHRM2 Missense_Mutation p.L454I 0.21 tolerated(0.17) probably_damaging(0.985) TCGA-86-8279-01 7 140082271 140082271 T C SLC37A3 Missense_Mutation p.H19R 0.30 deleterious(0.01) probably_damaging(0.99) TCGA-86-8279-01 7 142459819 142459819 C A PRSS1 Missense_Mutation p.P132H 0.21 deleterious(0) possibly_damaging(0.511) TCGA-86-8279-01 7 142571863 142571863 C A TRPV6 Missense_Mutation p.W495C 0.36 tolerated(0.05) probably_damaging(0.98) TCGA-86-8279-01 7 142723320 142723320 C T OR9A2 Silent p.G300G 0.15 TCGA-86-8279-01 7 143573263 143573263 C A FAM115A Missense_Mutation p.G147C 0.19 deleterious(0) probably_damaging(1) TCGA-86-8279-01 7 143657690 143657690 A T OR2F1 Silent p.T209T 0.18 TCGA-86-8279-01 7 14620560 14620560 G C DGKB Silent p.G513G 0.36 TCGA-86-8279-01 7 150761318 150761318 G T SLC4A2 Silent p.T27T 0.10 TCGA-86-8279-01 7 151917800 151917800 G C KMT2C Missense_Mutation p.Q1174E 0.09 possibly_damaging(0.897) TCGA-86-8279-01 7 151932938 151932938 C G KMT2C Missense_Mutation p.K911N 0.24 probably_damaging(0.979) TCGA-86-8279-01 7 158672580 158672580 G T WDR60 Missense_Mutation p.R260L 0.28 deleterious(0.01) probably_damaging(0.931) TCGA-86-8279-01 7 31692348 31692348 A T CCDC129 Intron 0.36 TCGA-86-8279-01 7 34009984 34009984 G T BMPER Missense_Mutation p.C149F 0.34 deleterious(0) probably_damaging(0.999) TCGA-86-8279-01 7 35242226 35242226 A G TBX20 Missense_Mutation p.L387P 0.30 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-86-8279-01 7 44154405 44154405 T A POLD2 Silent p.G463G 0.31 TCGA-86-8279-01 7 4874689 4874689 C A RADIL Missense_Mutation p.G322V 0.29 deleterious(0) probably_damaging(0.964) TCGA-86-8279-01 7 50459428 50459428 C A IKZF1 Silent p.V197V 0.33 TCGA-86-8279-01 7 57194299 57194299 C A ZNF479 Missense_Mutation p.G56C 0.05 deleterious(0) probably_damaging(0.977) TCGA-86-8279-01 7 71175857 71175857 C A WBSCR17 Missense_Mutation p.L538I 0.26 deleterious(0.01) probably_damaging(0.987) TCGA-86-8279-01 7 73280071 73280071 G T WBSCR28 Silent p.T222T 0.23 TCGA-86-8279-01 7 77212894 77212894 A T PTPN12 Missense_Mutation p.Y103F 0.19 deleterious(0) benign(0.198) TCGA-86-8279-01 7 91713957 91713957 T G AKAP9 Missense_Mutation p.S2884A 0.19 benign(0.075) TCGA-86-8279-01 7 96746877 96746877 G C ACN9 5'UTR 0.25 TCGA-86-8279-01 7 99128747 99128747 T C ZKSCAN5 Silent p.S465S 0.35 TCGA-86-8279-01 8 101153039 101153039 T A FBXO43 Silent p.I481I 0.44 TCGA-86-8279-01 8 104225207 104225207 T C BAALC Missense_Mutation p.I74T 0.40 tolerated(0.58) benign(0.003) TCGA-86-8279-01 8 110457425 110457425 T G PKHD1L1 Missense_Mutation p.L1776W 0.35 deleterious(0.02) probably_damaging(0.993) TCGA-86-8279-01 8 110984781 110984781 C A KCNV1 Nonsense_Mutation p.E233* 0.43 TCGA-86-8279-01 8 113259300 113259300 G T CSMD3 Missense_Mutation p.R3391S 0.41 deleterious(0) possibly_damaging(0.683) TCGA-86-8279-01 8 113678638 113678638 C A CSMD3 Missense_Mutation p.C895F 0.35 deleterious(0) probably_damaging(0.999) TCGA-86-8279-01 8 116426906 116426906 C A TRPS1 Missense_Mutation p.R1077I 0.22 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-86-8279-01 8 120633667 120633667 C A ENPP2 Missense_Mutation p.D129Y 0.15 deleterious(0) probably_damaging(0.985) TCGA-86-8279-01 8 124109635 124109635 G T TBC1D31 Missense_Mutation p.R262L 0.43 deleterious(0) possibly_damaging(0.652) TCGA-86-8279-01 8 133883729 133883729 G AT TG Frame_Shift_Ins p.C138Lfs*28 0.21 TCGA-86-8279-01 8 143999026 143999026 G - CYP11B2 Frame_Shift_Del p.I78Ffs*14 0.16 TCGA-86-8279-01 8 145012369 145012369 C A PLEC Missense_Mutation p.D209Y 0.69 unknown(0) TCGA-86-8279-01 8 145096188 145096188 C A SPATC1 Missense_Mutation p.D454E 0.47 deleterious(0.02) probably_damaging(0.997) TCGA-86-8279-01 8 1719663 1719663 G T CLN8 Missense_Mutation p.G148V 0.56 tolerated(0.05) probably_damaging(0.964) TCGA-86-8279-01 8 18257507 18257507 G T NAT2 Splice_Site 0.41 TCGA-86-8279-01 8 19363367 19363367 A G CSGALNACT1 5'UTR 0.35 TCGA-86-8279-01 8 26217798 26217798 G A PPP2R2A Splice_Site p.X163_splice 0.16 TCGA-86-8279-01 8 30695467 30695467 G T TEX15 Missense_Mutation p.P2395H 0.44 deleterious(0) possibly_damaging(0.794) TCGA-86-8279-01 8 33455016 33455016 C A DUSP26 Missense_Mutation p.W6C 0.43 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-86-8279-01 8 37691558 37691558 G A GPR124 Missense_Mutation p.R507H 0.56 deleterious(0.01) possibly_damaging(0.628) TCGA-86-8279-01 8 38205598 38205598 T A WHSC1L1 Missense_Mutation p.E31V 0.12 deleterious_low_confidence(0) possibly_damaging(0.864) TCGA-86-8279-01 8 38257831 38257831 A T LETM2 Silent p.L182L 0.16 TCGA-86-8279-01 8 48771464 48771464 C T PRKDC Silent p.L2096L 0.61 TCGA-86-8279-01 8 52321928 52321928 C G PXDNL Silent p.L752L 0.43 TCGA-86-8279-01 8 61178512 61178512 G A CA8 Missense_Mutation p.T130M 0.51 deleterious(0.02) probably_damaging(0.911) TCGA-86-8279-01 8 61654926 61654926 G A CHD7 Missense_Mutation p.R312Q 0.26 benign(0.238) TCGA-86-8279-01 8 61777824 61777824 C T CHD7 Missense_Mutation p.P2776S 0.34 possibly_damaging(0.679) TCGA-86-8279-01 8 63948230 63948230 C A GGH Missense_Mutation p.R70I 0.28 deleterious(0) probably_damaging(0.998) TCGA-86-8279-01 8 68188219 68188219 T C ARFGEF1 Silent p.P443P 0.52 TCGA-86-8279-01 8 69021814 69021814 G T PREX2 Missense_Mutation p.Q1034H 0.16 deleterious_low_confidence(0) possibly_damaging(0.541) TCGA-86-8279-01 8 73479989 73479989 C T KCNB2 Missense_Mutation p.P7L 0.59 tolerated_low_confidence(0.78) benign(0.003) TCGA-86-8279-01 8 76476336 76476336 G T HNF4G 3'UTR 0.59 TCGA-86-8279-01 8 85800003 85800003 C A RALYL Missense_Mutation p.H297N 0.38 tolerated(1) benign(0.001) TCGA-86-8279-01 9 100862212 100862212 C T TRIM14 Splice_Site p.X179_splice 0.08 TCGA-86-8279-01 9 104324194 104324194 G A RNF20 Silent p.E884E 0.46 TCGA-86-8279-01 9 104390596 104390596 G T GRIN3A Missense_Mutation p.H814N 0.30 deleterious(0.02) probably_damaging(0.942) TCGA-86-8279-01 9 113139630 113139630 T C SVEP1 Silent p.P3475P 0.24 TCGA-86-8279-01 9 115759647 115759648 - A ZNF883 RNA 0.37 TCGA-86-8279-01 9 131235918 131235918 C T ODF2 Silent p.N247N 0.14 TCGA-86-8279-01 9 136916702 136916703 - A BRD3 Frame_Shift_Ins p.A161Cfs*102 0.36 TCGA-86-8279-01 9 137642677 137642677 C T COL5A1 Silent p.P537P 0.44 TCGA-86-8279-01 9 137801748 137801748 G A FCN1 Missense_Mutation p.L293F 0.19 deleterious(0.03) possibly_damaging(0.56) TCGA-86-8279-01 9 138670575 138670575 A T KCNT1 Missense_Mutation p.N879I 0.09 deleterious(0) possibly_damaging(0.729) TCGA-86-8279-01 9 140093779 140093779 T G TPRN Missense_Mutation p.D462A 0.28 deleterious(0.04) probably_damaging(0.997) TCGA-86-8279-01 9 140880889 140880889 G T CACNA1B Silent p.L598L 0.45 TCGA-86-8279-01 9 21217252 21217252 G A IFNA16 Missense_Mutation p.S18F 0.56 deleterious(0.03) possibly_damaging(0.474) TCGA-86-8279-01 9 2718032 2718032 C T KCNV2 Missense_Mutation p.T98M 0.18 tolerated(0.25) benign(0.012) TCGA-86-8279-01 9 32784514 32784514 G T TMEM215 Silent p.L111L 0.62 TCGA-86-8279-01 9 65505634 65505634 G C SPATA31A7 Silent p.P642P 0.29 TCGA-86-8279-01 9 8449746 8449746 G A PTPRD Missense_Mutation p.R1323C 0.40 deleterious(0) possibly_damaging(0.462) TCGA-86-8279-01 X 107823945 107823945 G T COL4A5 Nonsense_Mutation p.E290* 0.74 TCGA-86-8279-01 X 107930735 107930735 C T COL4A5 Missense_Mutation p.P1447S 0.74 probably_damaging(0.979) TCGA-86-8279-01 X 111155735 111155735 C A TRPC5 Missense_Mutation p.K228N 0.70 deleterious(0.02) possibly_damaging(0.777) TCGA-86-8279-01 X 111903859 111903859 C A LHFPL1 Missense_Mutation p.Q159H 0.70 tolerated(0.27) benign(0.004) TCGA-86-8279-01 X 111914460 111914460 A G LHFPL1 Silent p.P53P 0.68 TCGA-86-8279-01 X 117788638 117788638 T C DOCK11 Missense_Mutation p.M1590T 0.70 deleterious(0) probably_damaging(0.989) TCGA-86-8279-01 X 120009066 120009066 C T CT47B1 Silent p.V153V 0.73 TCGA-86-8279-01 X 123554453 123554453 G T TENM1 Missense_Mutation p.L1564M 0.31 tolerated(0.31) benign(0.002) TCGA-86-8279-01 X 12708444 12708444 A G FRMPD4 Missense_Mutation p.Q271R 0.39 tolerated(0.07) probably_damaging(0.998) TCGA-86-8279-01 X 135432319 135432319 A G GPR112 Missense_Mutation p.I2152V 0.80 tolerated(0.39) benign(0.004) TCGA-86-8279-01 X 139038671 139038671 C A CXorf66 Missense_Mutation p.R157M 0.68 deleterious(0) probably_damaging(0.919) TCGA-86-8279-01 X 140984492 140984492 C A MAGEC3 Intron 0.15 TCGA-86-8279-01 X 142967545 142967545 G T UBE2NL Missense_Mutation p.A115S 0.68 tolerated(0.29) benign(0.157) TCGA-86-8279-01 X 148038070 148038070 C - AFF2 Frame_Shift_Del p.T833Qfs*26 0.47 TCGA-86-8279-01 X 148568768 148568768 T G IDS Intron 0.95 TCGA-86-8279-01 X 1508296 1508296 C A SLC25A6 Nonsense_Mutation p.G146* 0.23 TCGA-86-8279-01 X 27998408 27998408 G T DCAF8L1 Nonsense_Mutation p.Y348* 0.64 TCGA-86-8279-01 X 49161355 49161355 G T GAGE10 Missense_Mutation p.R6I 0.66 deleterious(0) possibly_damaging(0.895) TCGA-86-8279-01 X 54840802 54840803 - ACA MAGED2 Intron 0.69 TCGA-86-8279-01 X 63574715 63574715 C A MTMR8 Missense_Mutation p.G137V 0.44 tolerated(0.21) benign(0.045) TCGA-86-8279-01 X 73963197 73963197 C G KIAA2022 Missense_Mutation p.D399H 0.67 tolerated(0.07) benign(0.008) TCGA-86-8279-01 X 82763567 82763567 C A POU3F4 Missense_Mutation p.Q79K 0.50 tolerated(0.06) possibly_damaging(0.573) TCGA-86-8280-01 10 116930913 116930913 G T ATRNL1 Missense_Mutation p.G404V 0.06 tolerated(0.37) benign(0.001) TCGA-86-8280-01 10 27324243 27324243 C A ANKRD26 Missense_Mutation p.D1046Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-86-8280-01 11 27147316 27147316 G C BBOX1 Missense_Mutation p.V318L 0.05 tolerated(0.4) benign(0.004) TCGA-86-8280-01 11 67223680 67223680 G A CABP4 Missense_Mutation p.E130K 0.16 deleterious(0) possibly_damaging(0.871) TCGA-86-8280-01 11 92624019 92624019 G A FAT3 Missense_Mutation p.D4504N 0.13 benign(0) TCGA-86-8280-01 12 100431465 100431465 G C UHRF1BP1L Missense_Mutation p.H1448Q 0.16 tolerated(0.99) benign(0.02) TCGA-86-8280-01 12 100431466 100431466 T A UHRF1BP1L Missense_Mutation p.H1448L 0.16 tolerated(0.11) benign(0.019) TCGA-86-8280-01 12 46240643 46240643 C T ARID2 Silent p.S501S 0.11 TCGA-86-8280-01 12 5153860 5153860 G A KCNA5 Missense_Mutation p.G183S 0.08 deleterious(0) probably_damaging(1) TCGA-86-8280-01 12 8374772 8374772 C A FAM90A1 Missense_Mutation p.Q347H 0.14 tolerated(0.08) probably_damaging(0.987) TCGA-86-8280-01 12 8374849 8374849 C T FAM90A1 Missense_Mutation p.G322R 0.12 tolerated(0.45) benign(0.202) TCGA-86-8280-01 12 8374971 8374971 C T FAM90A1 Missense_Mutation p.G281D 0.10 tolerated(0.57) benign(0.008) TCGA-86-8280-01 12 8380205 8380205 G T FAM90A1 5'UTR 0.13 TCGA-86-8280-01 13 114523872 114523872 G A GAS6 Missense_Mutation p.H668Y 0.09 deleterious(0) probably_damaging(0.992) TCGA-86-8280-01 14 23503986 23503986 G A PSMB5 Silent p.L35L 0.10 TCGA-86-8280-01 14 31204930 31204930 C A SCFD1 3'UTR 0.16 TCGA-86-8280-01 15 28326979 28326979 C T OCA2 Silent p.A14A 0.11 TCGA-86-8280-01 15 52194165 52194165 G A TMOD3 Missense_Mutation p.G319E 0.25 deleterious(0) probably_damaging(1) TCGA-86-8280-01 16 9858372 9858372 G C GRIN2A Missense_Mutation p.P1010R 0.17 deleterious(0) probably_damaging(0.949) TCGA-86-8280-01 17 3477171 3477171 G A SHPK Missense_Mutation p.A620V 0.12 tolerated(0.29) benign(0.001) TCGA-86-8280-01 17 61662625 61662625 A G DCAF7 Missense_Mutation p.N64S 0.14 tolerated(0.2) benign(0.173) TCGA-86-8280-01 17 65850461 65850461 A C BPTF Missense_Mutation p.Y340S 0.17 benign(0.399) TCGA-86-8280-01 17 7578271 7578271 T G TP53 Missense_Mutation p.H193P 0.40 deleterious(0) probably_damaging(1) TCGA-86-8280-01 19 11660260 11660260 G A CNN1 Missense_Mutation p.M208I 0.27 deleterious(0.03) benign(0.232) TCGA-86-8280-01 19 1218477 1218477 T C STK11 Missense_Mutation p.Y118H 0.04 tolerated(0.13) benign(0.007) TCGA-86-8280-01 19 9056591 9056591 G T MUC16 Silent p.A10285A 0.18 TCGA-86-8280-01 1 157497435 157497435 G C FCRL5 Missense_Mutation p.H644Q 0.24 tolerated(0.12) possibly_damaging(0.552) TCGA-86-8280-01 1 24779953 24779953 C G NIPAL3 Missense_Mutation p.A199G 0.07 tolerated(0.25) benign(0.014) TCGA-86-8280-01 1 29533382 29533382 C T MECR Missense_Mutation p.A148T 0.10 tolerated(0.54) benign(0.002) TCGA-86-8280-01 1 33235745 33235745 C G KIAA1522 Missense_Mutation p.S322C 0.04 deleterious(0) unknown(0) TCGA-86-8280-01 1 47726107 47726107 G A STIL Silent p.Y978Y 0.06 TCGA-86-8280-01 20 23346288 23346288 G A GZF1 Missense_Mutation p.R423Q 0.11 tolerated(0.31) probably_damaging(0.922) TCGA-86-8280-01 20 3729932 3729932 G T HSPA12B Missense_Mutation p.G302C 0.23 tolerated(0.19) probably_damaging(0.951) TCGA-86-8280-01 20 57569746 57569746 C T NELFCD 3'UTR 0.35 TCGA-86-8280-01 21 28210095 28210095 G A ADAMTS1 Missense_Mutation p.P903S 0.15 tolerated(0.15) benign(0.052) TCGA-86-8280-01 21 46895420 46895420 G A COL18A1 Missense_Mutation p.D437N 0.16 unknown(0) TCGA-86-8280-01 22 21800926 21800926 G A HIC2 Missense_Mutation p.R581H 0.12 deleterious(0) probably_damaging(0.954) TCGA-86-8280-01 22 38151586 38151586 C T TRIOBP Silent p.A1869A 0.12 TCGA-86-8280-01 2 128335741 128335741 G A MYO7B Missense_Mutation p.A295T 0.30 tolerated(0.09) benign(0.021) TCGA-86-8280-01 2 97427664 97427664 A T CNNM4 Missense_Mutation p.M310L 0.20 deleterious(0.02) possibly_damaging(0.841) TCGA-86-8280-01 3 41266113 41266113 C T CTNNB1 Missense_Mutation p.S37F 0.21 deleterious(0) probably_damaging(0.962) TCGA-86-8280-01 3 52821945 52821945 C A ITIH1 Intron 0.04 TCGA-86-8280-01 4 87728886 87728886 A G PTPN13 Missense_Mutation p.M2312V 0.07 deleterious(0) probably_damaging(0.996) TCGA-86-8280-01 5 140250526 140250526 C T PCDHA11 Missense_Mutation p.A613V 0.05 tolerated_low_confidence(0.22) benign(0.036) TCGA-86-8280-01 5 140503807 140503807 A T PCDHB4 Missense_Mutation p.T743S 0.12 deleterious_low_confidence(0) possibly_damaging(0.45) TCGA-86-8280-01 5 37153852 37153852 T C C5orf42 Missense_Mutation p.H2734R 0.36 tolerated(0.33) benign(0.386) TCGA-86-8280-01 5 55110999 55110999 T C DDX4 Silent p.D662D 0.08 TCGA-86-8280-01 5 9044646 9044646 C T SEMA5A Missense_Mutation p.G982S 0.08 tolerated(0.5) possibly_damaging(0.559) TCGA-86-8280-01 6 116949404 116949404 G A RSPH4A Missense_Mutation p.E512K 0.10 deleterious(0.01) probably_damaging(1) TCGA-86-8280-01 7 107677954 107677954 C T LAMB4 Missense_Mutation p.D1520N 0.08 tolerated(0.62) benign(0.002) TCGA-86-8280-01 7 150034341 150034341 G C LRRC61 Missense_Mutation p.D131H 0.14 deleterious(0) probably_damaging(0.96) TCGA-86-8280-01 7 150747900 150747900 A G ASIC3 Missense_Mutation p.N290S 0.15 deleterious(0.02) benign(0.048) TCGA-86-8280-01 7 55242465 55242479 GGAATTAAGAGAAGC - EGFR In_Frame_Del p.E746_A750del 0.26 TCGA-86-8280-01 9 125239508 125239508 C A OR1J1 Missense_Mutation p.G233V 0.14 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-86-8280-01 X 153069729 153069729 C T PDZD4 Silent p.S463S 0.24 TCGA-86-8280-01 X 17745913 17745913 C T NHS Silent p.C1208C 0.17 TCGA-86-8281-01 10 135180498 135180498 C A ECHS1 Splice_Site p.X172_splice 0.20 TCGA-86-8281-01 10 15761681 15761681 C G ITGA8 Missense_Mutation p.L30F 0.30 deleterious(0.04) benign(0.003) TCGA-86-8281-01 10 34420400 34420400 C A PARD3 Missense_Mutation p.E1180D 0.24 tolerated(0.52) probably_damaging(0.989) TCGA-86-8281-01 10 45920487 45920487 G A ALOX5 Silent p.R247R 0.27 TCGA-86-8281-01 10 48389064 48389064 G T RBP3 Missense_Mutation p.A605D 0.14 tolerated(0.17) benign(0.003) TCGA-86-8281-01 10 48390154 48390154 T C RBP3 Missense_Mutation p.I242V 0.23 tolerated(1) benign(0.262) TCGA-86-8281-01 10 49687670 49687670 G - ARHGAP22 Frame_Shift_Del p.R154Vfs*8 0.24 TCGA-86-8281-01 10 52566444 52566444 T A A1CF 3'UTR 0.20 TCGA-86-8281-01 10 55955618 55955618 G C PCDH15 Missense_Mutation p.A377G 0.22 tolerated(0.06) possibly_damaging(0.593) TCGA-86-8281-01 10 73767293 73767293 C T CHST3 Silent p.I168I 0.32 TCGA-86-8281-01 10 85970907 85970907 G A CDHR1 Missense_Mutation p.V491M 0.05 deleterious(0) probably_damaging(0.999) TCGA-86-8281-01 10 88416037 88416037 G A OPN4 Silent p.T90T 0.25 TCGA-86-8281-01 11 107833102 107833102 C T RAB39A 3'UTR 0.24 TCGA-86-8281-01 11 107833103 107833103 A T RAB39A 3'UTR 0.26 TCGA-86-8281-01 11 1097832 1097832 C A MUC2 Missense_Mutation p.P2309T 0.30 unknown(0) TCGA-86-8281-01 11 113237006 113237006 A T TTC12 Missense_Mutation p.Y701F 0.22 tolerated(0.09) possibly_damaging(0.557) TCGA-86-8281-01 11 116767928 116767928 C A SIK3 Missense_Mutation p.G183V 0.29 deleterious(0) probably_damaging(1) TCGA-86-8281-01 11 124761447 124761447 C T ROBO4 Missense_Mutation p.D566N 0.04 deleterious(0.04) possibly_damaging(0.905) TCGA-86-8281-01 11 124763783 124763783 G A ROBO4 Missense_Mutation p.R493C 0.12 deleterious(0.04) benign(0.052) TCGA-86-8281-01 11 133815980 133815980 G A IGSF9B Missense_Mutation p.P80S 0.37 deleterious(0) probably_damaging(0.999) TCGA-86-8281-01 11 21592356 21592356 C G NELL1 Missense_Mutation p.P676R 0.26 deleterious(0) probably_damaging(0.949) TCGA-86-8281-01 11 4566849 4566849 G T OR52M1 Silent p.V143V 0.28 TCGA-86-8281-01 11 47182919 47182919 C A C11orf49 Intron 0.32 TCGA-86-8281-01 11 55038374 55038374 C A TRIM48 3'UTR 0.19 TCGA-86-8281-01 11 557472 557472 C T C11orf35 Missense_Mutation p.D214N 0.59 tolerated(0.09) possibly_damaging(0.722) TCGA-86-8281-01 11 56468356 56468356 T A OR9G1 Missense_Mutation p.F165I 0.15 deleterious(0.03) benign(0.012) TCGA-86-8281-01 11 58125726 58125726 A G OR5B17 Missense_Mutation p.S273P 0.22 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-86-8281-01 11 58207305 58207305 G C OR5B12 Missense_Mutation p.T107S 0.28 tolerated_low_confidence(0.16) benign(0.074) TCGA-86-8281-01 11 58602069 58602069 G T GLYATL2 Missense_Mutation p.Q240K 0.24 tolerated(0.65) benign(0.01) TCGA-86-8281-01 11 58602127 58602127 G T GLYATL2 Silent p.S220S 0.22 TCGA-86-8281-01 11 62416148 62416148 G A INTS5 Silent p.P468P 0.26 TCGA-86-8281-01 11 64419574 64419574 C T NRXN2 Nonsense_Mutation p.W823* 0.24 TCGA-86-8281-01 11 67833337 67833337 G C CHKA Missense_Mutation p.F347L 0.04 deleterious(0) probably_damaging(0.943) TCGA-86-8281-01 11 69062831 69062831 A G MYEOV Missense_Mutation p.R4G 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.765) TCGA-86-8281-01 11 73789208 73789208 C T C2CD3 Missense_Mutation p.D1519N 0.11 deleterious(0.03) probably_damaging(0.996) TCGA-86-8281-01 11 76255796 76255796 A G C11orf30 Missense_Mutation p.Y1068C 0.20 deleterious_low_confidence(0.02) benign(0.282) TCGA-86-8281-01 11 78147623 78147623 C A NARS2 3'UTR 0.26 TCGA-86-8281-01 12 100774500 100774500 G C SLC17A8 Missense_Mutation p.E41D 0.21 tolerated(0.37) benign(0.002) TCGA-86-8281-01 12 102302116 102302116 C T DRAM1 Silent p.A165A 0.23 TCGA-86-8281-01 12 125613930 125613930 C T AACS Silent p.I491I 0.20 TCGA-86-8281-01 12 29670389 29670389 G T TMTC1 Missense_Mutation p.P714T 0.25 deleterious(0) probably_damaging(0.988) TCGA-86-8281-01 12 40020070 40020070 C T C12orf40 5'UTR 0.28 TCGA-86-8281-01 12 50394955 50394955 C A RACGAP1 Missense_Mutation p.Q210H 0.14 tolerated(0.05) possibly_damaging(0.45) TCGA-86-8281-01 12 50394958 50394958 G A RACGAP1 Silent p.D209D 0.14 TCGA-86-8281-01 12 50483693 50483693 G T SMARCD1 Missense_Mutation p.E266D 0.23 tolerated(0.06) benign(0.299) TCGA-86-8281-01 12 52056596 52056596 G T SCN8A 5'UTR 0.25 TCGA-86-8281-01 12 6128067 6128067 G T VWF Nonsense_Mutation p.S1506* 0.26 TCGA-86-8281-01 12 62749183 62749183 G C USP15 Missense_Mutation p.R281T 0.23 tolerated(0.4) benign(0.109) TCGA-86-8281-01 12 89918896 89918896 C T POC1B Splice_Site p.X34_splice 0.20 TCGA-86-8281-01 12 9085944 9085944 C G PHC1 Missense_Mutation p.P631A 0.25 deleterious(0.02) unknown(0) TCGA-86-8281-01 13 102029276 102029276 A G NALCN Silent p.N169N 0.25 TCGA-86-8281-01 13 108861780 108861780 T C LIG4 Missense_Mutation p.K613E 0.29 tolerated(0.1) benign(0.022) TCGA-86-8281-01 13 113030692 113030692 G C SPACA7 5'UTR 0.42 TCGA-86-8281-01 13 46559839 46559839 T A ZC3H13 Missense_Mutation p.Q438L 0.22 unknown(0) TCGA-86-8281-01 13 50366664 50366664 C T KPNA3 5'UTR 0.31 TCGA-86-8281-01 13 51825780 51825780 C - FAM124A Frame_Shift_Del p.K131Rfs*98 0.35 TCGA-86-8281-01 14 104642350 104642350 C T KIF26A Silent p.I1075I 0.21 TCGA-86-8281-01 14 105945514 105945514 C T CRIP2 Silent p.C227C 0.34 TCGA-86-8281-01 14 106757742 106757742 T G IGHV2-26 Missense_Mutation p.T89P 0.28 deleterious(0.01) possibly_damaging(0.488) TCGA-86-8281-01 14 19378026 19378026 T C OR11H12 Silent p.L145L 0.10 TCGA-86-8281-01 14 20296002 20296002 A C OR4N2 Missense_Mutation p.Y132S 0.14 deleterious(0.03) benign(0.191) TCGA-86-8281-01 14 20864037 20864037 C A TEP1 Missense_Mutation p.E577D 0.27 deleterious(0.02) probably_damaging(0.983) TCGA-86-8281-01 14 24711492 24711492 G A TINF2 Missense_Mutation p.A16V 0.31 deleterious(0.03) possibly_damaging(0.682) TCGA-86-8281-01 14 57676686 57676686 C G EXOC5 Missense_Mutation p.L569F 0.21 tolerated(0.26) benign(0.094) TCGA-86-8281-01 14 58605152 58605152 C T C14orf37 Missense_Mutation p.A309T 0.07 tolerated(0.06) possibly_damaging(0.682) TCGA-86-8281-01 14 63757713 63757713 G C RHOJ Missense_Mutation p.E206Q 0.06 tolerated(0.13) benign(0.001) TCGA-86-8281-01 14 64936469 64936469 A C AKAP5 3'UTR 0.33 TCGA-86-8281-01 14 68029323 68029323 C T PLEKHH1 Silent p.I325I 0.12 TCGA-86-8281-01 14 81744032 81744032 G T STON2 Missense_Mutation p.F541L 0.26 tolerated(0.12) probably_damaging(0.944) TCGA-86-8281-01 14 94909507 94909507 C A SERPINA11 Missense_Mutation p.D325Y 0.18 deleterious(0) possibly_damaging(0.824) TCGA-86-8281-01 15 24922555 24922555 A T NPAP1 Missense_Mutation p.E514V 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-86-8281-01 15 25953142 25953142 C A ATP10A Missense_Mutation p.E852D 0.17 deleterious(0) probably_damaging(0.996) TCGA-86-8281-01 15 42457975 42457975 G A VPS39 Missense_Mutation p.R574C 0.21 deleterious(0.03) probably_damaging(1) TCGA-86-8281-01 15 48060806 48060806 C A SEMA6D Silent p.T598T 0.25 TCGA-86-8281-01 15 51860697 51860697 T A DMXL2 Missense_Mutation p.H91L 0.22 tolerated(0.08) possibly_damaging(0.772) TCGA-86-8281-01 15 53992106 53992106 C A WDR72 Missense_Mutation p.D536Y 0.29 deleterious(0) probably_damaging(0.996) TCGA-86-8281-01 15 67555484 67555484 G T IQCH Missense_Mutation p.V67F 0.26 tolerated(0.25) benign(0.022) TCGA-86-8281-01 16 14958985 14958985 G A NOMO1 Missense_Mutation p.D548N 0.21 tolerated(0.06) benign(0.287) TCGA-86-8281-01 16 22143018 22143018 C A VWA3A Missense_Mutation p.L614I 0.18 deleterious(0.04) probably_damaging(0.951) TCGA-86-8281-01 16 23555995 23555995 C A EARS2 Missense_Mutation p.G109C 0.24 deleterious(0) probably_damaging(1) TCGA-86-8281-01 16 27367205 27367205 G T IL4R Silent p.L249L 0.26 TCGA-86-8281-01 16 30745018 30745018 C A SRCAP Missense_Mutation p.D2131E 0.27 probably_damaging(0.972) TCGA-86-8281-01 16 33020692 33020692 G T IGHV3OR16-8 Missense_Mutation p.G34W 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-86-8281-01 16 47622972 47622972 G C PHKB Missense_Mutation p.E343Q 0.04 deleterious(0) probably_damaging(0.992) TCGA-86-8281-01 16 49671979 49671979 C A ZNF423 Missense_Mutation p.G362C 0.20 tolerated(0.1) possibly_damaging(0.894) TCGA-86-8281-01 16 50707702 50707702 A T SNX20 Missense_Mutation p.L189Q 0.22 tolerated(0.16) possibly_damaging(0.729) TCGA-86-8281-01 16 57113522 57113522 C A NLRC5 Missense_Mutation p.P1768T 0.26 deleterious(0.01) possibly_damaging(0.521) TCGA-86-8281-01 16 61687592 61687592 C - CDH8 Frame_Shift_Del p.D774Tfs*31 0.23 TCGA-86-8281-01 16 70432338 70432338 G A ST3GAL2 Silent p.A32A 0.06 TCGA-86-8281-01 16 75327766 75327766 A G CFDP1 3'UTR 0.36 TCGA-86-8281-01 16 78011606 78011606 T A VAT1L 3'UTR 0.25 TCGA-86-8281-01 16 89804127 89804127 A T FANCA 3'UTR 0.26 TCGA-86-8281-01 17 27075644 27075647 TGGT - TRAF4 Frame_Shift_Del p.L247Rfs*27 0.22 TCGA-86-8281-01 17 42288499 42288499 G A UBTF Nonsense_Mutation p.Q371* 0.06 TCGA-86-8281-01 17 48940480 48940480 G A TOB1 Missense_Mutation p.P300L 0.29 deleterious(0.01) benign(0.016) TCGA-86-8281-01 17 56635170 56635170 C T TEX14 Missense_Mutation p.E1483K 0.31 deleterious(0.03) benign(0.273) TCGA-86-8281-01 17 63049747 63049747 C A GNA13 Missense_Mutation p.R128L 0.27 tolerated(0.12) probably_damaging(0.998) TCGA-86-8281-01 17 68128495 68128495 C A KCNJ16 Silent p.G89G 0.22 TCGA-86-8281-01 17 74533526 74533526 C A CYGB Silent p.R33R 0.24 TCGA-86-8281-01 17 80007615 80007615 G A RFNG Missense_Mutation p.P256S 0.27 tolerated(0.37) benign(0.034) TCGA-86-8281-01 17 8020298 8020298 C G ALOXE3 Missense_Mutation p.V182L 0.19 tolerated(0.06) possibly_damaging(0.541) TCGA-86-8281-01 17 80559374 80559374 A T FOXK2 Nonstop_Mutation p.*661Lext*51 0.22 TCGA-86-8281-01 18 3100356 3100356 G A MYOM1 Missense_Mutation p.T1215I 0.14 deleterious(0.03) probably_damaging(1) TCGA-86-8281-01 18 42618506 42618506 G T SETBP1 Missense_Mutation p.G1353C 0.21 tolerated(0.15) possibly_damaging(0.653) TCGA-86-8281-01 18 55027316 55027316 C A ST8SIA3 Missense_Mutation p.H317Q 0.32 probably_damaging(0.966) TCGA-86-8281-01 18 56586643 56586643 G T ZNF532 Missense_Mutation p.R375I 0.24 deleterious(0) probably_damaging(0.999) TCGA-86-8281-01 18 6237960 6237960 C A L3MBTL4 Intron 0.23 TCGA-86-8281-01 18 76754904 76754904 G T SALL3 Silent p.R971R 0.32 TCGA-86-8281-01 19 10602581 10602581 C T KEAP1 Missense_Mutation p.G333S 0.35 deleterious(0) probably_damaging(1) TCGA-86-8281-01 19 11132438 11132438 G T SMARCA4 Missense_Mutation p.R885L 0.17 probably_damaging(0.989) TCGA-86-8281-01 19 11944626 11944626 G T ZNF440 3'UTR 0.33 TCGA-86-8281-01 19 1220369 1220369 C G STK11 Intron 0.21 TCGA-86-8281-01 19 14992036 14992036 G T OR7A17 Silent p.L44L 0.46 TCGA-86-8281-01 19 21366322 21366322 G T ZNF431 Missense_Mutation p.G406C 0.22 deleterious(0.02) probably_damaging(1) TCGA-86-8281-01 19 22155616 22155616 C A ZNF208 Missense_Mutation p.K740N 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-86-8281-01 19 22952013 22952013 G T ZNF99 Missense_Mutation p.N39K 0.13 deleterious(0) probably_damaging(0.987) TCGA-86-8281-01 19 30506049 30506049 T C URI1 3'UTR 0.30 TCGA-86-8281-01 19 30936418 30936418 C G ZNF536 Missense_Mutation p.S650C 0.28 deleterious(0) probably_damaging(0.999) TCGA-86-8281-01 19 31039649 31039649 C A ZNF536 Nonsense_Mutation p.C1041* 0.21 TCGA-86-8281-01 19 31768363 31768363 C T TSHZ3 Missense_Mutation p.R779H 0.04 tolerated(0.17) possibly_damaging(0.694) TCGA-86-8281-01 19 33202801 33202801 G T NUDT19 Missense_Mutation p.V356F 0.28 deleterious(0.02) benign(0.022) TCGA-86-8281-01 19 33597741 33597741 A T GPATCH1 Silent p.T407T 0.25 TCGA-86-8281-01 19 34821245 34821245 C T KIAA0355 Missense_Mutation p.A419V 0.10 deleterious(0) probably_damaging(0.971) TCGA-86-8281-01 19 36159326 36159326 C T UPK1A Intron 0.26 TCGA-86-8281-01 19 36205652 36205652 G A ZBTB32 Missense_Mutation p.A42T 0.25 tolerated(0.09) possibly_damaging(0.857) TCGA-86-8281-01 19 36229345 36229345 C T KMT2B Missense_Mutation p.R2679C 0.23 probably_damaging(0.993) TCGA-86-8281-01 19 36605823 36605823 G T POLR2I 5'UTR 0.25 TCGA-86-8281-01 19 37266918 37266918 G A CTD-2162K18.4 3'UTR 0.29 TCGA-86-8281-01 19 38956784 38956784 G T RYR1 Missense_Mutation p.R975L 0.16 possibly_damaging(0.84) TCGA-86-8281-01 19 39799011 39799011 C A LRFN1 Silent p.P526P 0.26 TCGA-86-8281-01 19 43428862 43428862 G C PSG7 3'UTR 0.19 TCGA-86-8281-01 19 43679578 43679578 G C PSG5 Nonsense_Mutation p.Y251* 0.27 TCGA-86-8281-01 19 43858524 43858524 G - CD177 Frame_Shift_Del p.A121Pfs*9 0.26 TCGA-86-8281-01 19 44470960 44470960 C T ZNF221 Nonsense_Mutation p.R436* 0.31 TCGA-86-8281-01 19 44793056 44793056 T A ZNF235 Nonsense_Mutation p.K178* 0.33 TCGA-86-8281-01 19 45406510 45406510 C T TOMM40 3'UTR 0.32 TCGA-86-8281-01 19 46443885 46443885 G T NOVA2 Missense_Mutation p.P239T 0.31 tolerated(0.1) unknown(0) TCGA-86-8281-01 19 47424934 47424934 C G ARHGAP35 Nonsense_Mutation p.S1001* 0.06 TCGA-86-8281-01 19 48925068 48925068 G A GRIN2D Silent p.P706P 0.24 TCGA-86-8281-01 19 51742804 51742804 C A CD33 Missense_Mutation p.P319H 0.29 tolerated(0.06) possibly_damaging(0.708) TCGA-86-8281-01 19 53643586 53643586 G A ZNF347 Missense_Mutation p.P833L 0.22 deleterious_low_confidence(0.01) benign(0.004) TCGA-86-8281-01 19 54137805 54137805 C A DPRX Missense_Mutation p.H17N 0.19 tolerated(0.35) benign(0.348) TCGA-86-8281-01 19 54824404 54824404 C A LILRA5 5'UTR 0.27 TCGA-86-8281-01 19 54967576 54967576 C T LENG8 Silent p.P459P 0.26 TCGA-86-8281-01 19 57840697 57840697 G T ZNF543 3'UTR 0.25 TCGA-86-8281-01 19 57840699 57840699 G T ZNF543 3'UTR 0.24 TCGA-86-8281-01 19 58499672 58499672 T G ZNF606 Splice_Site p.X102_splice 0.34 TCGA-86-8281-01 19 9056418 9056418 G T MUC16 Nonsense_Mutation p.S10343* 0.24 TCGA-86-8281-01 1 101343225 101343225 C G EXTL2 Missense_Mutation p.L80F 0.06 tolerated(0.78) benign(0.205) TCGA-86-8281-01 1 103427475 103427475 C T COL11A1 Missense_Mutation p.G1039S 0.20 unknown(0) TCGA-86-8281-01 1 147087647 147087647 C G BCL9 Missense_Mutation p.S202C 0.16 tolerated(0.08) possibly_damaging(0.72) TCGA-86-8281-01 1 152327479 152327479 C T FLG2 Missense_Mutation p.G928D 0.15 unknown(0) TCGA-86-8281-01 1 152760109 152760109 C A LCE1E Missense_Mutation p.Q112K 0.04 tolerated_low_confidence(0.6) unknown(0) TCGA-86-8281-01 1 152770592 152770592 C A LCE1D Missense_Mutation p.Q108K 0.14 unknown(0) TCGA-86-8281-01 1 153177402 153177402 C G LELP1 Silent p.P73P 0.16 TCGA-86-8281-01 1 153745758 153745758 C T INTS3 3'UTR 0.52 TCGA-86-8281-01 1 154744782 154744782 A T KCNN3 Missense_Mutation p.C373S 0.47 tolerated(0.08) benign(0.015) TCGA-86-8281-01 1 158369010 158369010 G A OR10T2 Silent p.L83L 0.16 TCGA-86-8281-01 1 158724743 158724743 G T OR6K6 Silent p.P46P 0.49 TCGA-86-8281-01 1 162335106 162335106 C G NOS1AP Intron 0.28 TCGA-86-8281-01 1 167038193 167038193 G T GPA33 Silent p.G127G 0.15 TCGA-86-8281-01 1 169565180 169565180 A T SELP Missense_Mutation p.V695E 0.59 tolerated(1) benign(0.005) TCGA-86-8281-01 1 170934354 170934354 C G MROH9 Missense_Mutation p.I146M 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-86-8281-01 1 17326506 17326506 C G ATP13A2 Missense_Mutation p.G347R 0.33 deleterious(0.02) possibly_damaging(0.738) TCGA-86-8281-01 1 173456971 173456971 A G PRDX6 Missense_Mutation p.K215R 0.28 deleterious(0.03) benign(0.041) TCGA-86-8281-01 1 178412244 178412245 - T RASAL2 Frame_Shift_Ins p.V456Cfs*13 0.38 TCGA-86-8281-01 1 182569642 182569642 T C RGS16 Missense_Mutation p.I132V 0.20 deleterious(0.04) possibly_damaging(0.503) TCGA-86-8281-01 1 183913403 183913403 C A COLGALT2 Nonsense_Mutation p.E442* 0.11 TCGA-86-8281-01 1 186106048 186106048 A C HMCN1 Silent p.R4521R 0.58 TCGA-86-8281-01 1 192150520 192150520 C - RGS18 Frame_Shift_Del p.P128Lfs*66 0.16 TCGA-86-8281-01 1 197297633 197297633 A G CRB1 Missense_Mutation p.D51G 0.16 tolerated(0.16) benign(0.076) TCGA-86-8281-01 1 197890472 197890472 G A LHX9 Missense_Mutation p.G139D 0.24 deleterious(0) possibly_damaging(0.462) TCGA-86-8281-01 1 20107215 20107215 G A TMCO4 Nonsense_Mutation p.Q13* 0.10 TCGA-86-8281-01 1 201980247 201980247 C G ELF3 5'UTR 0.14 TCGA-86-8281-01 1 204937425 204937425 C A NFASC Missense_Mutation p.T252N 0.09 tolerated(0.31) possibly_damaging(0.521) TCGA-86-8281-01 1 204937426 204937426 C T NFASC Silent p.T252T 0.09 TCGA-86-8281-01 1 206225037 206225037 C T AVPR1B Silent p.Y199Y 0.14 TCGA-86-8281-01 1 207644833 207644833 G C CR2 Missense_Mutation p.R520P 0.60 tolerated(0.07) benign(0.034) TCGA-86-8281-01 1 207748949 207748949 C G CR1 Silent p.L1487L 0.03 TCGA-86-8281-01 1 21050138 21050138 C A SH2D5 Missense_Mutation p.A297S 0.24 tolerated(0.55) possibly_damaging(0.848) TCGA-86-8281-01 1 230503892 230503892 T A PGBD5 Intron 0.60 TCGA-86-8281-01 1 236738176 236738176 C G HEATR1 Missense_Mutation p.A1038P 0.13 deleterious(0.01) benign(0.206) TCGA-86-8281-01 1 241886730 241886730 T A WDR64 Missense_Mutation p.S386T 0.63 tolerated(0.6) benign(0.339) TCGA-86-8281-01 1 248059203 248059203 G T OR2W3 Silent p.L105L 0.23 TCGA-86-8281-01 1 248059204 248059204 G T OR2W3 Missense_Mutation p.G106C 0.24 tolerated(0.06) benign(0.079) TCGA-86-8281-01 1 248084474 248084474 G T OR2T8 Missense_Mutation p.R52L 0.17 deleterious(0.01) benign(0.166) TCGA-86-8281-01 1 248458726 248458726 C A OR2T12 Missense_Mutation p.R52L 0.42 deleterious(0.01) benign(0.142) TCGA-86-8281-01 1 248458791 248458791 C A OR2T12 Silent p.L30L 0.61 TCGA-86-8281-01 1 248616676 248616676 C A OR2T2 Missense_Mutation p.T193K 0.25 tolerated(0.09) probably_damaging(0.999) TCGA-86-8281-01 1 39750872 39750872 G T MACF1 Missense_Mutation p.A422S 0.27 possibly_damaging(0.798) TCGA-86-8281-01 1 45798605 45798605 G T MUTYH Silent p.A160A 0.18 TCGA-86-8281-01 1 45981409 45981409 G A PRDX1 Silent p.F59F 0.24 TCGA-86-8281-01 1 52704947 52704947 A T ZFYVE9 Nonsense_Mutation p.K620* 0.29 TCGA-86-8281-01 1 52704948 52704948 A T ZFYVE9 Missense_Mutation p.K620I 0.29 deleterious(0) possibly_damaging(0.775) TCGA-86-8281-01 1 52861860 52861860 C A ORC1 Missense_Mutation p.K193N 0.29 tolerated(0.43) benign(0.067) TCGA-86-8281-01 1 54060494 54060494 C A GLIS1 Missense_Mutation p.G28C 0.30 deleterious_low_confidence(0) possibly_damaging(0.633) TCGA-86-8281-01 1 6304617 6304617 C T HES3 Missense_Mutation p.R31C 0.20 deleterious(0) probably_damaging(0.999) TCGA-86-8281-01 1 90049089 90049089 C T LRRC8B Nonsense_Mutation p.Q294* 0.25 TCGA-86-8281-01 1 92446354 92446354 A T BRDT Missense_Mutation p.K481M 0.27 deleterious(0.02) benign(0.334) TCGA-86-8281-01 1 99470069 99470069 G T LPPR5 Silent p.P53P 0.06 TCGA-86-8281-01 20 16729544 16729544 T A OTOR Missense_Mutation p.Y50N 0.27 deleterious(0) probably_damaging(0.95) TCGA-86-8281-01 20 30918002 30918002 A G KIF3B Missense_Mutation p.E676G 0.08 tolerated(0.05) benign(0.137) TCGA-86-8281-01 20 42815293 42815293 C A JPH2 Missense_Mutation p.W18L 0.24 deleterious(0) probably_damaging(1) TCGA-86-8281-01 20 44641106 44641106 C T MMP9 Silent p.H405H 0.19 TCGA-86-8281-01 20 44839157 44839157 C G CDH22 Missense_Mutation p.E359Q 0.08 tolerated(0.11) benign(0.019) TCGA-86-8281-01 20 45354608 45354608 C T SLC2A10 Silent p.V311V 0.23 TCGA-86-8281-01 21 34030155 34030155 C A SYNJ1 Missense_Mutation p.V817L 0.12 tolerated(0.39) benign(0.003) TCGA-86-8281-01 22 22385611 22385611 C A IGLV4-69 Missense_Mutation p.L34M 0.29 tolerated(0.09) probably_damaging(0.961) TCGA-86-8281-01 22 23101501 23101501 A G IGLV2-14 Missense_Mutation p.N52S 0.25 tolerated_low_confidence(0.11) benign(0.052) TCGA-86-8281-01 22 23523153 23523153 G T BCR Silent p.V2V 0.33 TCGA-86-8281-01 22 29706677 29706677 T C GAS2L1 Missense_Mutation p.L264P 0.34 deleterious(0) probably_damaging(1) TCGA-86-8281-01 22 33733757 33733757 G T LARGE Silent p.R388R 0.17 TCGA-86-8281-01 22 35811868 35811868 C T MCM5 Missense_Mutation p.S417L 0.26 deleterious(0) probably_damaging(0.941) TCGA-86-8281-01 22 37326823 37326823 C A CSF2RB Silent p.V321V 0.21 TCGA-86-8281-01 22 39884102 39884102 G T MGAT3 Silent p.P250P 0.31 TCGA-86-8281-01 22 46654189 46654189 G A PKDREJ Silent p.I1677I 0.36 TCGA-86-8281-01 2 137988633 137988633 T A THSD7B Missense_Mutation p.S581R 0.29 tolerated(0.28) possibly_damaging(0.683) TCGA-86-8281-01 2 165947027 165947027 A T SCN3A Missense_Mutation p.M1879K 0.32 deleterious(0) probably_damaging(0.987) TCGA-86-8281-01 2 170361444 170361444 G T BBS5 3'UTR 0.30 TCGA-86-8281-01 2 172822364 172822364 G C HAT1 Missense_Mutation p.L182F 0.22 deleterious(0.01) possibly_damaging(0.891) TCGA-86-8281-01 2 182542723 182542723 G T NEUROD1 Missense_Mutation p.P289T 0.22 tolerated(0.32) benign(0.032) TCGA-86-8281-01 2 185463677 185463677 C T ZNF804A 5'UTR 0.28 TCGA-86-8281-01 2 18765365 18765365 G T NT5C1B Missense_Mutation p.R354S 0.20 tolerated(0.52) benign(0.078) TCGA-86-8281-01 2 189599270 189599270 C A DIRC1 3'UTR 0.38 TCGA-86-8281-01 2 198267481 198267481 T A SF3B1 Missense_Mutation p.N626Y 0.28 deleterious(0) probably_damaging(0.993) TCGA-86-8281-01 2 203149196 203149196 G T NOP58 Missense_Mutation p.L142F 0.20 deleterious(0) benign(0.414) TCGA-86-8281-01 2 21236243 21236243 G A APOB Silent p.F1335F 0.24 TCGA-86-8281-01 2 231103065 231103065 T C SP140 Silent p.D125D 0.19 TCGA-86-8281-01 2 241705163 241705163 C AA KIF1A Frame_Shift_Ins p.G578Lfs*20 0.14 TCGA-86-8281-01 2 242066203 242066203 C A PASK Silent p.T709T 0.29 TCGA-86-8281-01 2 32639984 32639984 C T BIRC6 Missense_Mutation p.P542L 0.25 probably_damaging(0.997) TCGA-86-8281-01 2 50850470 50850470 G T NRXN1 Silent p.V405V 0.25 TCGA-86-8281-01 2 97405605 97405605 G A LMAN2L Missense_Mutation p.S58L 0.26 tolerated(0.19) benign(0.052) TCGA-86-8281-01 3 10070326 10070326 C G FANCD2 5'UTR 0.22 TCGA-86-8281-01 3 108288251 108288251 G C KIAA1524 Missense_Mutation p.F366L 0.20 tolerated(1) benign(0.008) TCGA-86-8281-01 3 114070631 114070631 G A ZBTB20 Silent p.R98R 0.24 TCGA-86-8281-01 3 121838357 121838357 C A CD86 Nonsense_Mutation p.C322* 0.21 TCGA-86-8281-01 3 124385987 124385987 G A KALRN Silent p.Q311Q 0.05 TCGA-86-8281-01 3 124632460 124632460 C A MUC13 Missense_Mutation p.D344Y 0.28 deleterious(0.01) benign(0.359) TCGA-86-8281-01 3 129247528 129247528 A T RHO 5'UTR 0.19 TCGA-86-8281-01 3 130300581 130300581 C A COL6A6 Missense_Mutation p.Q1242K 0.29 tolerated(0.89) possibly_damaging(0.767) TCGA-86-8281-01 3 139279789 139279789 C G NMNAT3 3'UTR 0.24 TCGA-86-8281-01 3 167248972 167248972 C T WDR49 Missense_Mutation p.D365N 0.19 tolerated(0.16) benign(0.038) TCGA-86-8281-01 3 184093302 184093302 C T THPO Splice_Site p.X76_splice 0.28 TCGA-86-8281-01 3 196669381 196669381 G C NCBP2 5'UTR 0.23 TCGA-86-8281-01 3 35724361 35724361 C A ARPP21 Missense_Mutation p.Q51K 0.20 deleterious(0.04) benign(0.128) TCGA-86-8281-01 3 39226506 39226506 C A XIRP1 Missense_Mutation p.Q1477H 0.30 deleterious(0.02) possibly_damaging(0.62) TCGA-86-8281-01 3 52402841 52402841 G T DNAH1 Silent p.P1950P 0.26 TCGA-86-8281-01 3 52818371 52818371 C A ITIH1 Missense_Mutation p.P429T 0.23 tolerated(0.13) probably_damaging(1) TCGA-86-8281-01 3 54959211 54959211 G T LRTM1 Silent p.V13V 0.17 TCGA-86-8281-01 3 58139114 58139114 G T FLNB Missense_Mutation p.S2158I 0.29 tolerated(0.46) benign(0.07) TCGA-86-8281-01 3 68055689 68055689 C T FAM19A1 Intron 0.26 TCGA-86-8281-01 4 103832677 103832677 C T SLC9B1 Missense_Mutation p.A283T 0.13 deleterious(0.04) benign(0.028) TCGA-86-8281-01 4 108535322 108535322 C A PAPSS1 3'UTR 0.28 TCGA-86-8281-01 4 115997288 115997288 C A NDST4 Missense_Mutation p.R302M 0.26 deleterious(0) probably_damaging(0.993) TCGA-86-8281-01 4 120188592 120188592 C T USP53 Nonsense_Mutation p.Q364* 0.18 TCGA-86-8281-01 4 120188600 120188600 C T USP53 Silent p.I366I 0.19 TCGA-86-8281-01 4 126240570 126240570 G T FAT4 Nonsense_Mutation p.E1002* 0.31 TCGA-86-8281-01 4 134071180 134071180 C A PCDH10 5'UTR 0.26 TCGA-86-8281-01 4 158234012 158234012 C T GRIA2 Silent p.N217N 0.04 TCGA-86-8281-01 4 3447890 3447890 C T HGFAC Silent p.I408I 0.23 TCGA-86-8281-01 4 48082040 48082040 A G TXK Silent p.Y354Y 0.22 TCGA-86-8281-01 4 55141105 55141105 C A PDGFRA Nonsense_Mutation p.S584* 0.25 TCGA-86-8281-01 4 62845387 62845387 G T LPHN3 Missense_Mutation p.R903L 0.28 deleterious(0) probably_damaging(0.958) TCGA-86-8281-01 4 65147201 65147201 G T TECRL Nonsense_Mutation p.Y303* 0.21 TCGA-86-8281-01 4 68619559 68619559 G T GNRHR Silent p.I165I 0.25 TCGA-86-8281-01 4 76809404 76809404 C A PPEF2 Silent p.R165R 0.17 TCGA-86-8281-01 4 887203 887203 C A GAK Missense_Mutation p.A318S 0.30 deleterious(0.02) benign(0.144) TCGA-86-8281-01 4 88996617 88996617 G A PKD2 Missense_Mutation p.R893K 0.23 deleterious(0.04) benign(0.416) TCGA-86-8281-01 4 88996618 88996618 G C PKD2 Missense_Mutation p.R893S 0.23 deleterious(0.05) benign(0.416) TCGA-86-8281-01 4 91230436 91230436 C G CCSER1 Missense_Mutation p.S334C 0.33 tolerated_low_confidence(0.07) possibly_damaging(0.885) TCGA-86-8281-01 5 112349214 112349214 C G DCP2 3'UTR 0.09 TCGA-86-8281-01 5 137728897 137728897 G A KDM3B Silent p.K889K 0.19 TCGA-86-8281-01 5 140554409 140554409 G T PCDHB7 Missense_Mutation p.G665C 0.13 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-86-8281-01 5 140720584 140720584 C A PCDHGA2 Silent p.A682A 0.32 TCGA-86-8281-01 5 140731379 140731379 C A PCDHGB1 Missense_Mutation p.H518N 0.27 deleterious(0.01) probably_damaging(0.992) TCGA-86-8281-01 5 14608879 14608879 G C FAM105A Missense_Mutation p.R217T 0.25 deleterious(0.01) benign(0.208) TCGA-86-8281-01 5 149459664 149459664 C A CSF1R Missense_Mutation p.M181I 0.27 tolerated(0.6) benign(0.003) TCGA-86-8281-01 5 149901000 149901000 G T NDST1 Missense_Mutation p.V62L 0.25 tolerated_low_confidence(1) benign(0.004) TCGA-86-8281-01 5 15937257 15937257 C T FBXL7 Missense_Mutation p.R480C 0.33 deleterious(0) possibly_damaging(0.892) TCGA-86-8281-01 5 180046339 180046339 G T FLT4 Missense_Mutation p.A892E 0.23 deleterious(0) probably_damaging(0.999) TCGA-86-8281-01 5 21975483 21975483 G A CDH12 Silent p.D81D 0.22 TCGA-86-8281-01 5 225612 225612 G T SDHA Missense_Mutation p.D131Y 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-86-8281-01 5 35659120 35659120 G A SPEF2 Splice_Site p.X327_splice 0.21 TCGA-86-8281-01 5 491990 491990 G C SLC9A3 Missense_Mutation p.F136L 0.21 deleterious(0.03) possibly_damaging(0.649) TCGA-86-8281-01 5 50685751 50685751 G T ISL1 Missense_Mutation p.Q250H 0.31 tolerated(0.23) benign(0.008) TCGA-86-8281-01 6 110048374 110048374 G T FIG4 Missense_Mutation p.D118Y 0.09 tolerated(0.43) possibly_damaging(0.818) TCGA-86-8281-01 6 112506489 112506489 C T LAMA4 Missense_Mutation p.E343K 0.04 tolerated(0.29) benign(0.119) TCGA-86-8281-01 6 13486957 13486957 C T GFOD1 Missense_Mutation p.D56N 0.21 deleterious(0) probably_damaging(1) TCGA-86-8281-01 6 135254133 135254133 G T ALDH8A1 Silent p.T210T 0.31 TCGA-86-8281-01 6 149983170 149983170 T C LATS1 Missense_Mutation p.I1030V 0.08 tolerated(0.2) possibly_damaging(0.895) TCGA-86-8281-01 6 155577906 155577906 A G TIAM2 Missense_Mutation p.K1586R 0.24 tolerated(0.3) benign(0.005) TCGA-86-8281-01 6 161134100 161134100 T A PLG Missense_Mutation p.C164S 0.32 deleterious(0) probably_damaging(1) TCGA-86-8281-01 6 168479586 168479586 C A FRMD1 Silent p.R63R 0.36 TCGA-86-8281-01 6 29054138 29054138 A T OR2B3 Missense_Mutation p.D296E 0.13 tolerated(0.52) benign(0.007) TCGA-86-8281-01 6 29274539 29274539 C A OR14J1 Missense_Mutation p.H25N 0.43 deleterious(0.01) benign(0.199) TCGA-86-8281-01 6 47649835 47649835 C T GPR111 Missense_Mutation p.H514Y 0.44 deleterious(0.02) possibly_damaging(0.876) TCGA-86-8281-01 6 53516940 53516940 A G KLHL31 Missense_Mutation p.V454A 0.32 tolerated(0.93) benign(0.003) TCGA-86-8281-01 6 74229616 74229616 T G EEF1A1 Missense_Mutation p.E45A 0.09 tolerated_low_confidence(0.05) probably_damaging(0.999) TCGA-86-8281-01 6 74229620 74229620 T C EEF1A1 Missense_Mutation p.K44E 0.08 deleterious_low_confidence(0.01) benign(0.011) TCGA-86-8281-01 6 80635962 80635962 G T ELOVL4 Silent p.L79L 0.26 TCGA-86-8281-01 6 80881011 80881011 A G BCKDHB Missense_Mutation p.R216G 0.30 deleterious(0.03) benign(0.422) TCGA-86-8281-01 6 88853545 88853545 T A CNR1 3'UTR 0.32 TCGA-86-8281-01 6 97053782 97053782 C G FHL5 Silent p.S113S 0.20 TCGA-86-8281-01 7 100364825 100364825 T C ZAN Missense_Mutation p.V1602A 0.18 unknown(0) TCGA-86-8281-01 7 101188641 101188641 C A COL26A1 Silent p.P242P 0.24 TCGA-86-8281-01 7 105656384 105656384 G T CDHR3 Missense_Mutation p.V447F 0.20 deleterious(0) benign(0.174) TCGA-86-8281-01 7 106509302 106509302 G T PIK3CG Missense_Mutation p.Q432H 0.28 tolerated(0.12) benign(0.277) TCGA-86-8281-01 7 121651319 121651319 C A PTPRZ1 Missense_Mutation p.T740K 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-86-8281-01 7 126698177 126698177 C A GRM8 Intron 0.14 TCGA-86-8281-01 7 142622610 142622610 C T TRPV5 Intron 0.05 TCGA-86-8281-01 7 149477052 149477052 C T SSPO RNA 0.20 TCGA-86-8281-01 7 27169186 27169186 G C HOXA4 Missense_Mutation p.N207K 0.29 deleterious(0) possibly_damaging(0.684) TCGA-86-8281-01 7 31622773 31622773 G A CCDC129 Missense_Mutation p.G425D 0.06 tolerated(0.06) probably_damaging(0.979) TCGA-86-8281-01 7 53103862 53103862 C A POM121L12 Silent p.A166A 0.24 TCGA-86-8281-01 7 66264340 66264340 G T KCTD7 Silent p.L253L 0.19 TCGA-86-8281-01 7 94791272 94791272 G C PPP1R9A Missense_Mutation p.K581N 0.30 deleterious(0) possibly_damaging(0.521) TCGA-86-8281-01 8 124361527 124361528 - TT ATAD2 Frame_Shift_Ins p.E602Kfs*8 0.22 TCGA-86-8281-01 8 1497208 1497208 G C DLGAP2 Missense_Mutation p.E117Q 0.16 deleterious(0) probably_damaging(0.989) TCGA-86-8281-01 8 27729441 27729441 C T SCARA5 3'UTR 0.28 TCGA-86-8281-01 8 3245041 3245041 C A CSMD1 Missense_Mutation p.W919C 0.19 probably_damaging(0.978) TCGA-86-8281-01 8 4494967 4494967 G T CSMD1 Missense_Mutation p.R67S 0.27 probably_damaging(0.997) TCGA-86-8281-01 8 52320747 52320747 C A PXDNL Missense_Mutation p.R1146I 0.13 deleterious(0) probably_damaging(0.999) TCGA-86-8281-01 8 53558357 53558357 C A RB1CC1 Nonsense_Mutation p.E1298* 0.27 TCGA-86-8281-01 8 59512551 59512551 T A NSMAF Missense_Mutation p.D468V 0.21 tolerated(0.28) possibly_damaging(0.886) TCGA-86-8281-01 8 81897324 81897324 T C PAG1 Missense_Mutation p.K188R 0.27 deleterious(0) benign(0.123) TCGA-86-8281-01 8 87235286 87235286 A T SLC7A13 Silent p.T244T 0.33 TCGA-86-8281-01 9 100222622 100222622 G T TDRD7 Missense_Mutation p.D340Y 0.28 deleterious(0) possibly_damaging(0.798) TCGA-86-8281-01 9 105767340 105767340 A G CYLC2 Missense_Mutation p.K143E 0.29 tolerated(0.38) unknown(0) TCGA-86-8281-01 9 117168754 117168754 G - DFNB31 Frame_Shift_Del p.P706Hfs*33 0.21 TCGA-86-8281-01 9 130580453 130580453 G T ENG Silent p.T544T 0.24 TCGA-86-8281-01 9 135942012 135942012 G T CEL Missense_Mutation p.G215W 0.30 deleterious(0) probably_damaging(1) TCGA-86-8281-01 9 136029298 136029298 T C GBGT1 Missense_Mutation p.Q237R 0.24 tolerated(0.29) benign(0.016) TCGA-86-8281-01 9 15486865 15486865 G C PSIP1 Nonsense_Mutation p.S118* 0.06 TCGA-86-8281-01 9 21409567 21409567 A T IFNA8 Missense_Mutation p.E131V 0.21 deleterious(0.01) probably_damaging(0.931) TCGA-86-8281-01 9 3266222 3266222 T C RFX3 Missense_Mutation p.M481V 0.30 tolerated(0.37) benign(0.015) TCGA-86-8281-01 9 35403186 35403186 G T UNC13B Silent p.V1420V 0.27 TCGA-86-8281-01 X 102333543 102333543 C A NXF3 Missense_Mutation p.G466C 0.68 deleterious(0) probably_damaging(0.992) TCGA-86-8281-01 X 119037569 119037569 C G AKAP14 Intron 0.36 TCGA-86-8281-01 X 133087120 133087120 C T GPC3 Missense_Mutation p.M98I 0.71 tolerated(0.62) benign(0.003) TCGA-86-8281-01 X 1331519 1331519 C T CRLF2 Silent p.R3R 0.22 TCGA-86-8281-01 X 141291100 141291100 G T MAGEC2 Missense_Mutation p.P225H 0.32 deleterious(0) probably_damaging(0.997) TCGA-86-8281-01 X 153586812 153586812 C A FLNA Splice_Site p.X1533_splice 0.36 TCGA-86-8281-01 X 21674752 21674752 G T KLHL34 Silent p.A385A 0.36 TCGA-86-8281-01 X 53610524 53610524 C A HUWE1 Missense_Mutation p.M1838I 0.53 benign(0.243) TCGA-86-8281-01 Y 2829332 2829332 C A ZFY Silent p.V93V 0.59 TCGA-86-8281-01 Y 6736413 6736413 G T AMELY Missense_Mutation p.L80M 0.53 tolerated(0.19) probably_damaging(0.924) TCGA-86-8358-01 10 102750198 102750198 T A C10orf2 Missense_Mutation p.V497E 0.40 deleterious(0) probably_damaging(0.996) TCGA-86-8358-01 10 104536131 104536131 G T WBP1L Intron 0.67 TCGA-86-8358-01 10 107012560 107012560 C G SORCS3 Missense_Mutation p.L1045V 0.66 tolerated(0.55) probably_damaging(0.912) TCGA-86-8358-01 10 108536371 108536371 C T SORCS1 Missense_Mutation p.R269Q 0.57 tolerated(0.37) probably_damaging(0.927) TCGA-86-8358-01 10 11505065 11505065 C A USP6NL Missense_Mutation p.G638V 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.899) TCGA-86-8358-01 10 115423621 115423621 A G NRAP Silent p.S7S 0.76 TCGA-86-8358-01 10 11567387 11567387 T A USP6NL Missense_Mutation p.L68F 0.38 deleterious(0.03) probably_damaging(0.965) TCGA-86-8358-01 10 116056706 116056706 G T AFAP1L2 Intron 0.68 TCGA-86-8358-01 10 118351339 118351339 G T PNLIPRP1 Missense_Mutation p.G36W 0.78 deleterious(0.01) probably_damaging(0.923) TCGA-86-8358-01 10 118897451 118897451 G T VAX1 Silent p.L39L 0.76 TCGA-86-8358-01 10 119305185 119305185 T A EMX2 Missense_Mutation p.L150Q 0.78 tolerated(0.17) possibly_damaging(0.629) TCGA-86-8358-01 10 119799784 119799784 G A RAB11FIP2 Missense_Mutation p.L216F 0.76 deleterious(0) probably_damaging(0.996) TCGA-86-8358-01 10 124457544 124457544 C G C10orf120 Missense_Mutation p.R238T 0.76 tolerated(0.15) possibly_damaging(0.787) TCGA-86-8358-01 10 17110259 17110259 C A CUBN Nonsense_Mutation p.E938* 0.34 TCGA-86-8358-01 10 18280159 18280159 G A SLC39A12 Missense_Mutation p.G450E 0.48 deleterious(0) probably_damaging(0.986) TCGA-86-8358-01 10 18789788 18789788 T A CACNB2 Nonsense_Mutation p.C168* 0.45 TCGA-86-8358-01 10 21962662 21962662 G - MLLT10 Frame_Shift_Del p.G479Afs*26 0.31 TCGA-86-8358-01 10 22208761 22208761 C A DNAJC1 Missense_Mutation p.R212I 0.42 deleterious(0.01) possibly_damaging(0.824) TCGA-86-8358-01 10 25701354 25701354 G T GPR158 Silent p.L429L 0.47 TCGA-86-8358-01 10 26455089 26455089 G T MYO3A Missense_Mutation p.W1031C 0.44 deleterious(0) probably_damaging(0.968) TCGA-86-8358-01 10 26534849 26534849 G T GAD2 Splice_Site p.X281_splice 0.20 TCGA-86-8358-01 10 27493467 27493467 C A ACBD5 Missense_Mutation p.W489C 0.24 deleterious(0) probably_damaging(0.996) TCGA-86-8358-01 10 27493468 27493468 C A ACBD5 Missense_Mutation p.W489L 0.27 deleterious(0.01) probably_damaging(0.987) TCGA-86-8358-01 10 30336469 30336469 C T KIAA1462 Silent p.S91S 0.37 TCGA-86-8358-01 10 30656772 30656772 C A AL161651.1 5'Flank 0.20 TCGA-86-8358-01 10 31809607 31809607 C A ZEB1 Silent p.P449P 0.35 TCGA-86-8358-01 10 38343714 38343714 A T ZNF33A Missense_Mutation p.Y221F 0.35 tolerated(0.34) benign(0.033) TCGA-86-8358-01 10 44052018 44052018 T A ZNF239 3'UTR 0.26 TCGA-86-8358-01 10 46967678 46967678 C T SYT15 Silent p.K133K 0.07 TCGA-86-8358-01 10 54527756 54527756 T A MBL2 3'UTR 0.45 TCGA-86-8358-01 10 55566772 55566772 C T PCDH15 Missense_Mutation p.S1538N 0.40 tolerated_low_confidence(0.28) benign(0.045) TCGA-86-8358-01 10 55955634 55955634 C A PCDH15 Missense_Mutation p.G372C 0.40 deleterious(0) probably_damaging(0.997) TCGA-86-8358-01 10 5789336 5789336 G T FAM208B Missense_Mutation p.D1318Y 0.21 deleterious(0) possibly_damaging(0.847) TCGA-86-8358-01 10 61830562 61830562 T G ANK3 Missense_Mutation p.E3359D 0.42 benign(0.007) TCGA-86-8358-01 10 63170201 63170201 C A TMEM26 Missense_Mutation p.R329L 0.27 tolerated(0.68) benign(0.001) TCGA-86-8358-01 10 64967479 64967479 C A JMJD1C Missense_Mutation p.S1317I 0.37 deleterious_low_confidence(0) benign(0.128) TCGA-86-8358-01 10 68686233 68686233 G T LRRTM3 5'UTR 0.50 TCGA-86-8358-01 10 70333280 70333280 A T TET1 Silent p.L395L 0.38 TCGA-86-8358-01 10 71158457 71158457 A T HK1 Missense_Mutation p.R832W 0.54 deleterious(0.01) possibly_damaging(0.844) TCGA-86-8358-01 10 73058922 73058922 T A UNC5B Missense_Mutation p.L909H 0.48 deleterious(0) probably_damaging(1) TCGA-86-8358-01 10 73567652 73567652 C A CDH23 Silent p.A630A 0.50 TCGA-86-8358-01 10 78646961 78646961 G T KCNMA1 3'Flank 0.46 TCGA-86-8358-01 10 78771794 78771794 A C KCNMA1 Missense_Mutation p.F675V 0.45 deleterious(0.02) benign(0.02) TCGA-86-8358-01 10 91359245 91359245 C G PANK1 Silent p.L358L 0.65 TCGA-86-8358-01 10 94291554 94291554 C A IDE Missense_Mutation p.L204F 0.84 deleterious(0.01) probably_damaging(1) TCGA-86-8358-01 10 99126540 99126540 C A RRP12 Missense_Mutation p.E1058D 0.81 tolerated(0.51) benign(0.001) TCGA-86-8358-01 11 1011116 1011116 G T AP2A2 3'UTR 0.54 TCGA-86-8358-01 11 102649958 102649958 G A MMP10 Missense_Mutation p.S161F 0.22 deleterious(0.01) possibly_damaging(0.722) TCGA-86-8358-01 11 104916050 104916050 G T CARD16 5'Flank 0.45 TCGA-86-8358-01 11 104971435 104971435 C A CARD17 Missense_Mutation p.G27C 0.24 deleterious(0) possibly_damaging(0.762) TCGA-86-8358-01 11 105961310 105961310 C T AASDHPPT Missense_Mutation p.H146Y 0.23 tolerated(0.1) benign(0.062) TCGA-86-8358-01 11 107578643 107578643 G T SLN Missense_Mutation p.T5N 0.59 deleterious_low_confidence(0.03) possibly_damaging(0.728) TCGA-86-8358-01 11 10778370 10778370 A G CTR9 Missense_Mutation p.N193D 0.26 tolerated(0.06) benign(0.432) TCGA-86-8358-01 11 1090898 1090898 C T MUC2 Silent p.L1265L 0.35 TCGA-86-8358-01 11 111225079 111225079 G A POU2AF1 Silent p.A226A 0.14 TCGA-86-8358-01 11 111747647 111747647 C A FDXACB1 Nonsense_Mutation p.E140* 0.44 TCGA-86-8358-01 11 113283323 113283323 G - DRD2 Frame_Shift_Del p.Q365Sfs*31 0.16 TCGA-86-8358-01 11 113295193 113295193 G - DRD2 Frame_Shift_Del p.R61Afs*12 0.27 TCGA-86-8358-01 11 116636085 116636085 A T BUD13 Silent p.L105L 0.40 TCGA-86-8358-01 11 119029412 119029412 C G ABCG4 Missense_Mutation p.A438G 0.33 deleterious(0.01) benign(0.268) TCGA-86-8358-01 11 1217217 1217217 G T MUC5AC RNA 0.28 TCGA-86-8358-01 11 122928528 122928529 - T HSPA8 Frame_Shift_Ins p.G619Rfs*25 0.32 TCGA-86-8358-01 11 122929364 122929364 T A HSPA8 Nonsense_Mutation p.K500* 0.46 TCGA-86-8358-01 11 123600464 123600464 A C ZNF202 Missense_Mutation p.S158A 0.24 tolerated(0.09) benign(0.006) TCGA-86-8358-01 11 123811042 123811042 G T OR4D5 Missense_Mutation p.C240F 0.50 deleterious(0) probably_damaging(0.998) TCGA-86-8358-01 11 123886335 123886335 C A OR10G4 Silent p.A18A 0.64 TCGA-86-8358-01 11 123886510 123886510 C G OR10G4 Missense_Mutation p.P77A 0.49 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 11 124134894 124134894 C A OR8G5 Missense_Mutation p.L58I 0.38 deleterious(0.05) possibly_damaging(0.908) TCGA-86-8358-01 11 124135110 124135110 C G OR8G5 Missense_Mutation p.P130A 0.38 tolerated(0.16) benign(0.013) TCGA-86-8358-01 11 124623437 124623437 G A ESAM 3'UTR 0.20 TCGA-86-8358-01 11 124789807 124789807 C A HEPN1 Missense_Mutation p.P54H 0.66 deleterious_low_confidence(0.02) probably_damaging(0.979) TCGA-86-8358-01 11 1247900 1247900 C A MUC5B Nonsense_Mutation p.Y85* 0.59 TCGA-86-8358-01 11 1265811 1265811 C A MUC5B Silent p.P2567P 0.30 TCGA-86-8358-01 11 1270618 1270618 C A MUC5B Missense_Mutation p.L4170M 0.31 unknown(0) TCGA-86-8358-01 11 1283282 1283282 G C MUC5B 3'UTR 0.17 TCGA-86-8358-01 11 128807680 128807680 C A TP53AIP1 Missense_Mutation p.A12S 0.10 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-86-8358-01 11 131781325 131781325 G T NTM 5'Flank 0.41 TCGA-86-8358-01 11 134252717 134252717 T A B3GAT1 Missense_Mutation p.S269C 0.42 deleterious(0) possibly_damaging(0.825) TCGA-86-8358-01 11 1432629 1432629 C A BRSK2 5'UTR 0.45 TCGA-86-8358-01 11 15098835 15098835 C G CALCB Silent p.S76S 0.57 TCGA-86-8358-01 11 15134051 15134051 C A INSC Missense_Mutation p.S12R 0.17 tolerated_low_confidence(0.07) benign(0) TCGA-86-8358-01 11 17409667 17409667 C T KCNJ11 5'UTR 0.44 TCGA-86-8358-01 11 17483152 17483152 C T ABCC8 Missense_Mutation p.C267Y 0.41 deleterious(0.05) benign(0.012) TCGA-86-8358-01 11 17554975 17554975 A T USH1C Intron 0.43 TCGA-86-8358-01 11 18763889 18763889 A T PTPN5 Silent p.P215P 0.51 TCGA-86-8358-01 11 20699561 20699561 C G NELL1 Missense_Mutation p.Q47E 0.40 tolerated(0.09) benign(0.2) TCGA-86-8358-01 11 21596634 21596634 G T NELL1 3'UTR 0.35 TCGA-86-8358-01 11 26529696 26529696 G T ANO3 Missense_Mutation p.G160C 0.30 deleterious(0) probably_damaging(1) TCGA-86-8358-01 11 26655804 26655804 C T ANO3 Missense_Mutation p.L643F 0.10 deleterious(0) probably_damaging(1) TCGA-86-8358-01 11 26743178 26743178 A G SLC5A12 Silent p.F28F 0.49 TCGA-86-8358-01 11 293727 293727 G C ATHL1 Missense_Mutation p.W538C 0.18 deleterious(0) probably_damaging(0.996) TCGA-86-8358-01 11 31815604 31815604 T - PAX6 Frame_Shift_Del p.I261Mfs*25 0.28 TCGA-86-8358-01 11 3249999 3249999 C A MRGPRE Missense_Mutation p.V10L 0.32 tolerated(0.73) benign(0.001) TCGA-86-8358-01 11 35231568 35231568 G T CD44 Missense_Mutation p.D525Y 0.36 tolerated(0.05) probably_damaging(0.928) TCGA-86-8358-01 11 4389327 4389327 T G OR52B4 Missense_Mutation p.M67L 0.30 tolerated(0.05) benign(0.411) TCGA-86-8358-01 11 46321504 46321504 G T CREB3L1 Missense_Mutation p.D41Y 0.21 deleterious(0) probably_damaging(0.94) TCGA-86-8358-01 11 46341923 46341923 G T CREB3L1 Missense_Mutation p.G456V 0.60 tolerated_low_confidence(0.1) benign(0.355) TCGA-86-8358-01 11 4703328 4703328 A T OR51E2 Missense_Mutation p.V205D 0.26 deleterious(0) probably_damaging(0.919) TCGA-86-8358-01 11 4825641 4825641 G A OR52R1 5'Flank 0.31 TCGA-86-8358-01 11 4967910 4967910 C G OR51A4 Missense_Mutation p.V141L 0.36 tolerated(0.15) benign(0.005) TCGA-86-8358-01 11 51412048 51412048 C T OR4A5 Missense_Mutation p.M116I 0.52 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-86-8358-01 11 5269688 5269688 C A HBG1 Missense_Mutation p.L115F 0.33 deleterious(0.01) probably_damaging(0.915) TCGA-86-8358-01 11 5373323 5373323 T C OR51B6 Missense_Mutation p.Y196H 0.43 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 11 55035827 55035827 C A TRIM48 Missense_Mutation p.A186D 0.20 tolerated(0.48) benign(0.001) TCGA-86-8358-01 11 55606479 55606479 G T OR5D16 Silent p.L84L 0.34 TCGA-86-8358-01 11 55905149 55905149 C T OR8J3 Missense_Mutation p.G16S 0.25 deleterious(0.01) probably_damaging(1) TCGA-86-8358-01 11 56086668 56086668 G T OR8K3 Missense_Mutation p.V296L 0.43 deleterious_low_confidence(0) benign(0.388) TCGA-86-8358-01 11 56143346 56143346 G T OR8U1 Missense_Mutation p.G83W 0.30 deleterious(0) probably_damaging(0.97) TCGA-86-8358-01 11 56468138 56468138 C A OR9G1 Missense_Mutation p.S92Y 0.22 deleterious(0) probably_damaging(0.993) TCGA-86-8358-01 11 57102099 57102099 G C SSRP1 Missense_Mutation p.S26R 0.34 tolerated(0.14) benign(0.017) TCGA-86-8358-01 11 57569605 57569605 G T CTNND1 Missense_Mutation p.V453L 0.28 deleterious(0) possibly_damaging(0.534) TCGA-86-8358-01 11 57798932 57798932 C A OR6Q1 Missense_Mutation p.L170I 0.32 deleterious(0.01) benign(0.186) TCGA-86-8358-01 11 57982883 57982883 C A OR1S1 Missense_Mutation p.P223T 0.42 deleterious(0) probably_damaging(1) TCGA-86-8358-01 11 58035060 58035060 G T OR10W1 Missense_Mutation p.Q91K 0.38 deleterious(0) probably_damaging(0.995) TCGA-86-8358-01 11 58190024 58190024 G C OR5B2 Silent p.S237S 0.40 TCGA-86-8358-01 11 58482886 58482886 G T GLYAT Missense_Mutation p.T31N 0.29 deleterious(0) probably_damaging(0.982) TCGA-86-8358-01 11 58979598 58979598 G T MPEG1 Silent p.T247T 0.28 TCGA-86-8358-01 11 59224554 59224554 G T OR4D6 Nonsense_Mutation p.G41* 0.38 TCGA-86-8358-01 11 59480985 59480985 C A OR10V1 Missense_Mutation p.D112Y 0.48 deleterious(0) probably_damaging(1) TCGA-86-8358-01 11 59834551 59834551 C A MS4A3 Missense_Mutation p.P160Q 0.29 tolerated(0.11) benign(0.139) TCGA-86-8358-01 11 59834552 59834552 G A MS4A3 Silent p.P160P 0.29 TCGA-86-8358-01 11 60637184 60637184 C A ZP1 Missense_Mutation p.L165I 0.49 tolerated(0.39) benign(0.004) TCGA-86-8358-01 11 60777080 60777080 G T CD6 Missense_Mutation p.R273L 0.29 tolerated(0.13) benign(0.006) TCGA-86-8358-01 11 60786757 60786757 C G CD6 Missense_Mutation p.D658E 0.17 tolerated(0.41) benign(0.112) TCGA-86-8358-01 11 6129103 6129103 G - OR56B4 Frame_Shift_Del p.W32Cfs*6 0.27 TCGA-86-8358-01 11 61495623 61495623 A T DAGLA Splice_Site p.X213_splice 0.42 TCGA-86-8358-01 11 61544777 61544777 G T MYRF Missense_Mutation p.L544F 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-86-8358-01 11 6226835 6226835 C A C11orf42 5'UTR 0.49 TCGA-86-8358-01 11 6231690 6231690 C A C11orf42 Missense_Mutation p.P228H 0.44 deleterious(0.01) possibly_damaging(0.776) TCGA-86-8358-01 11 62996884 62996884 A T SLC22A25 Missense_Mutation p.S81T 0.45 deleterious(0.04) benign(0.387) TCGA-86-8358-01 11 64335178 64335178 G T SLC22A11 Missense_Mutation p.R389L 0.27 deleterious(0) possibly_damaging(0.657) TCGA-86-8358-01 11 64366348 64366348 C A SLC22A12 Silent p.L341L 0.39 TCGA-86-8358-01 11 64367342 64367342 C A SLC22A12 Missense_Mutation p.A422D 0.44 deleterious(0) probably_damaging(0.943) TCGA-86-8358-01 11 64597714 64597714 C A CDC42BPG Missense_Mutation p.A1107S 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-86-8358-01 11 64606679 64606679 C T CDC42BPG Silent p.T234T 0.29 TCGA-86-8358-01 11 65269018 65269018 G T MALAT1 RNA 0.25 TCGA-86-8358-01 11 65561584 65561584 G C OVOL1 Missense_Mutation p.L61F 0.28 tolerated(0.08) possibly_damaging(0.897) TCGA-86-8358-01 11 65826401 65826401 G T SF3B2 Missense_Mutation p.R356L 0.37 tolerated(0.26) benign(0.069) TCGA-86-8358-01 11 66191771 66191771 G T NPAS4 Missense_Mutation p.L470F 0.06 deleterious_low_confidence(0.04) probably_damaging(0.979) TCGA-86-8358-01 11 66359147 66359147 C A CCDC87 Missense_Mutation p.R447L 0.33 tolerated(0.08) benign(0.004) TCGA-86-8358-01 11 66638805 66638805 C A PC Silent p.R156R 0.36 TCGA-86-8358-01 11 67074433 67074433 G T SSH3 Missense_Mutation p.S155I 0.35 deleterious(0.04) benign(0.24) TCGA-86-8358-01 11 6789582 6789582 C A OR2AG2 Missense_Mutation p.G203C 0.42 tolerated(0.52) possibly_damaging(0.611) TCGA-86-8358-01 11 6807026 6807026 G T OR2AG1 Missense_Mutation p.G253V 0.49 deleterious(0) probably_damaging(1) TCGA-86-8358-01 11 68380631 68380631 A T PPP6R3 3'UTR 0.70 TCGA-86-8358-01 11 6942412 6942412 C A OR2D3 Silent p.L60L 0.39 TCGA-86-8358-01 11 6942512 6942512 G C OR2D3 Missense_Mutation p.V94L 0.06 deleterious(0.01) benign(0.128) TCGA-86-8358-01 11 70336381 70336381 C A SHANK2 Missense_Mutation p.D852Y 0.52 tolerated(0.07) possibly_damaging(0.62) TCGA-86-8358-01 11 71146436 71146436 C A DHCR7 Silent p.L471L 0.16 TCGA-86-8358-01 11 71806262 71806262 G C LRTOMT Intron 0.25 TCGA-86-8358-01 11 72290584 72290584 G A PDE2A Silent p.S750S 0.33 TCGA-86-8358-01 11 72406093 72406093 C A ARAP1 Missense_Mutation p.R1209L 0.41 tolerated(0.53) benign(0.243) TCGA-86-8358-01 11 73689368 73689368 C G UCP2 Missense_Mutation p.G19A 0.57 tolerated(0.33) benign(0.012) TCGA-86-8358-01 11 77907333 77907333 G T USP35 Silent p.P14P 0.39 TCGA-86-8358-01 11 800236 800236 G T PIDD Missense_Mutation p.F723L 0.13 deleterious(0.04) benign(0.405) TCGA-86-8358-01 11 8117131 8117131 G T TUB Missense_Mutation p.A217S 0.27 tolerated(0.48) benign(0.028) TCGA-86-8358-01 11 8123161 8123161 G T TUB Nonsense_Mutation p.E561* 0.30 TCGA-86-8358-01 11 92592414 92592414 G C FAT3 Missense_Mutation p.A3862P 0.54 possibly_damaging(0.709) TCGA-86-8358-01 11 92623878 92623878 G T FAT3 Nonsense_Mutation p.E4457* 0.34 TCGA-86-8358-01 11 94731955 94731955 G T KDM4D Missense_Mutation p.R473S 0.21 deleterious_low_confidence(0.03) benign(0.147) TCGA-86-8358-01 11 95504787 95504787 C A FAM76B Missense_Mutation p.V320F 0.12 deleterious(0.01) possibly_damaging(0.844) TCGA-86-8358-01 12 100453822 100453822 C T UHRF1BP1L Splice_Site p.X517_splice 0.49 TCGA-86-8358-01 12 101520708 101520708 C A ANO4 Missense_Mutation p.P875T 0.41 deleterious(0) probably_damaging(1) TCGA-86-8358-01 12 10217424 10217424 C A CLEC9A Missense_Mutation p.Q189K 0.56 deleterious(0.04) benign(0.063) TCGA-86-8358-01 12 103699818 103699818 C A C12orf42 Missense_Mutation p.G189C 0.51 deleterious(0) probably_damaging(1) TCGA-86-8358-01 12 107080753 107080753 G C RFX4 Missense_Mutation p.G166R 0.42 deleterious(0.03) possibly_damaging(0.866) TCGA-86-8358-01 12 109306399 109306399 G T SVOP Missense_Mutation p.S455Y 0.34 deleterious(0) possibly_damaging(0.59) TCGA-86-8358-01 12 109611946 109611946 G T ACACB Missense_Mutation p.S376I 0.32 deleterious(0) benign(0.385) TCGA-86-8358-01 12 109680336 109680336 G T ACACB Missense_Mutation p.R1706L 0.35 deleterious(0) benign(0.386) TCGA-86-8358-01 12 10978769 10978769 C A TAS2R10 Missense_Mutation p.D34Y 0.75 deleterious(0) probably_damaging(0.938) TCGA-86-8358-01 12 110989774 110989774 C A PPTC7 Splice_Site p.X75_splice 0.45 TCGA-86-8358-01 12 111290678 111290678 C A CCDC63 5'UTR 0.39 TCGA-86-8358-01 12 113433240 113433240 A G OAS2 Silent p.L196L 0.34 TCGA-86-8358-01 12 113533149 113533149 C A DTX1 Missense_Mutation p.P523H 0.27 deleterious(0) probably_damaging(0.984) TCGA-86-8358-01 12 113715048 113715048 C T TPCN1 Missense_Mutation p.P427S 0.43 deleterious(0.04) benign(0.396) TCGA-86-8358-01 12 117769042 117769042 C A NOS1 5'Flank 0.46 TCGA-86-8358-01 12 118533341 118533341 C A VSIG10 Missense_Mutation p.A120S 0.53 tolerated(0.1) possibly_damaging(0.728) TCGA-86-8358-01 12 120152002 120152002 C A CIT Nonsense_Mutation p.E1436* 0.26 TCGA-86-8358-01 12 120760004 120760004 G T PLA2G1B Missense_Mutation p.Q147K 0.44 tolerated(1) benign(0) TCGA-86-8358-01 12 121458260 121458260 G A OASL 3'UTR 0.45 TCGA-86-8358-01 12 121461868 121461868 C G OASL Missense_Mutation p.Q324H 0.37 deleterious(0.01) probably_damaging(0.984) TCGA-86-8358-01 12 121766213 121766213 C G ANAPC5 Missense_Mutation p.D404H 0.50 tolerated(0.1) possibly_damaging(0.882) TCGA-86-8358-01 12 133384676 133384676 C T GOLGA3 Missense_Mutation p.G327R 0.48 deleterious_low_confidence(0.03) benign(0.16) TCGA-86-8358-01 12 13716728 13716728 G T GRIN2B Missense_Mutation p.H1148Q 0.79 tolerated_low_confidence(0.49) benign(0.088) TCGA-86-8358-01 12 20807011 20807011 C A PDE3A Missense_Mutation p.A1019E 0.74 deleterious(0) probably_damaging(0.998) TCGA-86-8358-01 12 24102591 24102591 T A SOX5 5'UTR 0.65 TCGA-86-8358-01 12 41337832 41337832 G T CNTN1 Missense_Mutation p.D515Y 0.29 deleterious(0) probably_damaging(0.998) TCGA-86-8358-01 12 49933244 49933244 G A KCNH3 Silent p.L15L 0.44 TCGA-86-8358-01 12 52163108 52163108 G A SCN8A Missense_Mutation p.G1121S 0.24 tolerated(0.61) benign(0.314) TCGA-86-8358-01 12 52282556 52282556 G T ANKRD33 Missense_Mutation p.G117V 0.38 tolerated(0.36) benign(0.005) TCGA-86-8358-01 12 52702325 52702325 T A KRT86 Missense_Mutation p.S473T 0.08 tolerated(0.43) benign(0) TCGA-86-8358-01 12 53010074 53010074 C T KRT73 Missense_Mutation p.E180K 0.35 deleterious(0.02) possibly_damaging(0.576) TCGA-86-8358-01 12 53188083 53188083 C T KRT3 Silent p.L226L 0.39 TCGA-86-8358-01 12 53189282 53189282 G C KRT3 Missense_Mutation p.P182R 0.36 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 12 53621178 53621178 T A RARG Missense_Mutation p.Q51L 0.20 tolerated_low_confidence(0.48) benign(0.045) TCGA-86-8358-01 12 55356413 55356413 G A TESPA1 Silent p.T423T 0.41 TCGA-86-8358-01 12 56094902 56094902 C A ITGA7 Missense_Mutation p.D151Y 0.39 deleterious(0.01) possibly_damaging(0.575) TCGA-86-8358-01 12 57643084 57643084 C T STAC3 Missense_Mutation p.R25Q 0.37 tolerated(0.13) benign(0.029) TCGA-86-8358-01 12 57974760 57974760 C A KIF5A Missense_Mutation p.L854M 0.26 deleterious(0) probably_damaging(0.998) TCGA-86-8358-01 12 58014207 58014207 G T SLC26A10 Missense_Mutation p.L68F 0.19 tolerated(0.29) benign(0.269) TCGA-86-8358-01 12 59270256 59270256 C A LRIG3 Missense_Mutation p.G889V 0.27 deleterious(0) possibly_damaging(0.703) TCGA-86-8358-01 12 64521867 64521867 C T SRGAP1 Missense_Mutation p.R923W 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-86-8358-01 12 6707248 6707248 C G CHD4 Missense_Mutation p.Q568H 0.68 deleterious(0.05) probably_damaging(0.934) TCGA-86-8358-01 12 67675815 67675815 A C CAND1 Missense_Mutation p.Q65P 0.51 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 12 67696182 67696182 A C CAND1 Silent p.V360V 0.32 TCGA-86-8358-01 12 68720479 68720479 C A MDM1 Silent p.L152L 0.53 TCGA-86-8358-01 12 70066688 70066688 A G BEST3 Missense_Mutation p.W309R 0.52 deleterious(0.04) possibly_damaging(0.665) TCGA-86-8358-01 12 70929817 70929817 A C PTPRB Silent p.V2023V 0.38 TCGA-86-8358-01 12 7551110 7551110 G C CD163L1 Nonsense_Mutation p.Y493* 0.70 TCGA-86-8358-01 12 77436980 77436980 C A E2F7 Splice_Site p.X330_splice 0.45 TCGA-86-8358-01 12 78579398 78579398 G T NAV3 Missense_Mutation p.A1882S 0.20 tolerated(0.85) benign(0.003) TCGA-86-8358-01 12 80663933 80663933 T A OTOGL Silent p.A830A 0.29 TCGA-86-8358-01 12 8391311 8391311 C A RP11-266K4.9 Intron 0.68 TCGA-86-8358-01 12 9231860 9231860 G T A2M Silent p.G1033G 0.72 TCGA-86-8358-01 12 95365305 95365305 C A NDUFA12 Missense_Mutation p.V117L 0.42 tolerated(1) benign(0.021) TCGA-86-8358-01 13 100617791 100617791 C A ZIC5 Missense_Mutation p.S611I 0.16 deleterious(0) possibly_damaging(0.557) TCGA-86-8358-01 13 101777002 101777002 T - NALCN Frame_Shift_Del p.R717Gfs*14 0.25 TCGA-86-8358-01 13 101828713 101828713 A T NALCN Missense_Mutation p.L593M 0.35 deleterious(0.02) probably_damaging(0.967) TCGA-86-8358-01 13 103343188 103343188 C A METTL21C Missense_Mutation p.S86I 0.38 tolerated(0.19) possibly_damaging(0.88) TCGA-86-8358-01 13 113333674 113333674 C T C13orf35 5'UTR 0.44 TCGA-86-8358-01 13 113730285 113730285 G A MCF2L Missense_Mutation p.M438I 0.55 tolerated(0.39) benign(0.037) TCGA-86-8358-01 13 114839284 114839284 C A RASA3 Silent p.P28P 0.44 TCGA-86-8358-01 13 19751129 19751129 T C TUBA3C Missense_Mutation p.I332V 0.79 tolerated_low_confidence(0.26) benign(0.027) TCGA-86-8358-01 13 28155640 28155640 A G LNX2 Silent p.H67H 0.71 TCGA-86-8358-01 13 29933477 29933477 G T MTUS2 Missense_Mutation p.R1005L 0.81 deleterious(0.03) benign(0.254) TCGA-86-8358-01 13 31531029 31531029 T C TEX26 Missense_Mutation p.L111P 0.38 deleterious(0.05) benign(0.272) TCGA-86-8358-01 13 31540398 31540398 G - TEX26 Frame_Shift_Del p.W170* 0.31 TCGA-86-8358-01 13 36429708 36429708 C A DCLK1 Intron 0.73 TCGA-86-8358-01 13 39433587 39433587 C G FREM2 Missense_Mutation p.T2460R 0.19 deleterious(0) probably_damaging(0.97) TCGA-86-8358-01 13 48954366 48954366 C - RB1 Frame_Shift_Del p.T497Hfs*22 0.29 TCGA-86-8358-01 13 52330482 52330482 G T WDFY2 Missense_Mutation p.K316N 0.67 tolerated(0.08) probably_damaging(0.998) TCGA-86-8358-01 13 53419726 53419726 G A PCDH8 Silent p.P891P 0.37 TCGA-86-8358-01 13 53420605 53420605 T A PCDH8 Missense_Mutation p.Q656L 0.59 tolerated(0.18) benign(0.018) TCGA-86-8358-01 13 58209235 58209235 C G PCDH17 Missense_Mutation p.S852C 0.83 deleterious(0.01) probably_damaging(0.94) TCGA-86-8358-01 13 96592221 96592221 T A UGGT2 Missense_Mutation p.E601V 0.61 tolerated(0.36) benign(0.031) TCGA-86-8358-01 14 100374055 100374055 A G EML1 Silent p.K382K 0.12 TCGA-86-8358-01 14 101510584 101510584 C A MIR1185-2 RNA 0.68 TCGA-86-8358-01 14 105176007 105176007 C G INF2 Silent p.A701A 0.10 TCGA-86-8358-01 14 105396326 105396326 C A PLD4 Silent p.R201R 0.48 TCGA-86-8358-01 14 105397112 105397112 A T PLD4 Missense_Mutation p.S251C 0.19 deleterious(0) probably_damaging(1) TCGA-86-8358-01 14 105407969 105407969 C A AHNAK2 Missense_Mutation p.G4607C 0.57 probably_damaging(0.993) TCGA-86-8358-01 14 105413676 105413676 T G AHNAK2 Missense_Mutation p.Q2704H 0.19 benign(0.037) TCGA-86-8358-01 14 105421104 105421104 G T AHNAK2 Silent p.T228T 0.51 TCGA-86-8358-01 14 106091126 106091126 C A IGHG4 Missense_Mutation p.R224L 0.10 deleterious(0.04) benign(0.017) TCGA-86-8358-01 14 106405824 106405824 A C IGHV6-1 Silent p.S50S 0.23 TCGA-86-8358-01 14 106405825 106405825 G T IGHV6-1 Missense_Mutation p.S50Y 0.23 deleterious(0) possibly_damaging(0.643) TCGA-86-8358-01 14 106552576 106552576 C A IGHV3-9 Silent p.V21V 0.47 TCGA-86-8358-01 14 19553409 19553409 A G POTEG 5'UTR 0.12 TCGA-86-8358-01 14 19571413 19571413 C A POTEG Missense_Mutation p.P398T 0.18 tolerated(0.05) benign(0.044) TCGA-86-8358-01 14 20020228 20020228 T C POTEM 5'UTR 0.14 TCGA-86-8358-01 14 20784612 20784612 C A CCNB1IP1 Missense_Mutation p.W24L 0.73 tolerated(0.07) possibly_damaging(0.793) TCGA-86-8358-01 14 21025165 21025165 G C RNASE9 Missense_Mutation p.Q27E 0.64 tolerated(0.19) possibly_damaging(0.764) TCGA-86-8358-01 14 21501883 21501883 G T RNASE13 3'UTR 0.74 TCGA-86-8358-01 14 22459084 22459084 C A TRAV16 Missense_Mutation p.T79N 0.73 deleterious(0.01) benign(0.362) TCGA-86-8358-01 14 23450492 23450492 T A AJUBA Silent p.P328P 0.46 TCGA-86-8358-01 14 23902777 23902777 C A MYH7 Missense_Mutation p.E55D 0.36 tolerated(0.37) benign(0.032) TCGA-86-8358-01 14 24527233 24527233 G T LRRC16B Missense_Mutation p.V428F 0.49 deleterious(0) probably_damaging(0.923) TCGA-86-8358-01 14 24652821 24652821 C T IPO4 Missense_Mutation p.V680M 0.47 tolerated(0.05) benign(0.001) TCGA-86-8358-01 14 24846902 24846902 T G NFATC4 3'UTR 0.09 TCGA-86-8358-01 14 25281805 25281805 T A STXBP6 3'UTR 0.54 TCGA-86-8358-01 14 26917816 26917816 A T NOVA1 Missense_Mutation p.H291Q 0.39 tolerated(0.33) unknown(0) TCGA-86-8358-01 14 29237049 29237049 G T FOXG1 Silent p.A188A 0.26 TCGA-86-8358-01 14 31346777 31346777 G A COCH Splice_Site p.X28_splice 0.15 TCGA-86-8358-01 14 31354999 31354999 T A COCH Intron 0.16 TCGA-86-8358-01 14 36781180 36781180 T G MBIP Missense_Mutation p.K208Q 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-86-8358-01 14 39305001 39305001 G C LINC00639 RNA 0.75 TCGA-86-8358-01 14 39650316 39650316 C T PNN Missense_Mutation p.P468L 0.65 tolerated_low_confidence(0.06) benign(0.187) TCGA-86-8358-01 14 42357021 42357021 C A LRFN5 Nonsense_Mutation p.S398* 0.32 TCGA-86-8358-01 14 42373534 42373534 G T LRFN5 3'UTR 0.73 TCGA-86-8358-01 14 52478301 52478301 C T NID2 Missense_Mutation p.G1174E 0.36 deleterious(0) probably_damaging(0.997) TCGA-86-8358-01 14 55203962 55203962 C A SAMD4A Silent p.T312T 0.43 TCGA-86-8358-01 14 57070541 57070541 G C TMEM260 Missense_Mutation p.G118A 0.47 deleterious(0.01) possibly_damaging(0.643) TCGA-86-8358-01 14 59797978 59797978 G T DAAM1 Missense_Mutation p.G538W 0.12 tolerated(0.09) unknown(0) TCGA-86-8358-01 14 67431988 67431988 G T GPHN Silent p.S303S 0.50 TCGA-86-8358-01 14 81372385 81372385 C A CEP128 Missense_Mutation p.S92I 0.84 deleterious(0) possibly_damaging(0.872) TCGA-86-8358-01 14 89016816 89016816 C A PTPN21 5'UTR 0.61 TCGA-86-8358-01 14 93688707 93688707 C T UBR7 Missense_Mutation p.A391V 0.23 tolerated(0.14) probably_damaging(0.998) TCGA-86-8358-01 14 94772555 94772555 G C SERPINA6 Missense_Mutation p.S295R 0.07 tolerated(0.52) benign(0.092) TCGA-86-8358-01 14 94776256 94776256 A G SERPINA6 Missense_Mutation p.M234T 0.51 deleterious(0) probably_damaging(0.993) TCGA-86-8358-01 14 94848951 94848951 C A SERPINA1 Silent p.L208L 0.45 TCGA-86-8358-01 14 95058418 95058418 G A SERPINA5 Missense_Mutation p.V355M 0.23 deleterious(0) probably_damaging(0.987) TCGA-86-8358-01 14 95596458 95596458 G A DICER1 Silent p.N170N 0.17 TCGA-86-8358-01 14 99642361 99642361 G T BCL11B Missense_Mutation p.P271Q 0.33 deleterious(0.05) possibly_damaging(0.714) TCGA-86-8358-01 15 24921778 24921778 C A NPAP1 Missense_Mutation p.P255H 0.74 deleterious(0) probably_damaging(0.998) TCGA-86-8358-01 15 25463961 25463961 T G SNORD115-28 5'Flank 0.77 TCGA-86-8358-01 15 25472146 25472146 C G SNORD115-33 5'Flank 0.81 TCGA-86-8358-01 15 28465785 28465785 C - HERC2 Frame_Shift_Del p.P1887Lfs*5 0.46 TCGA-86-8358-01 15 37385787 37385787 C A MEIS2 Missense_Mutation p.D212Y 0.75 deleterious(0.02) possibly_damaging(0.635) TCGA-86-8358-01 15 38990597 38990597 C T C15orf53 Missense_Mutation p.R131C 0.74 tolerated_low_confidence(0.13) benign(0) TCGA-86-8358-01 15 40509640 40509640 A G BUB1B Intron 0.72 TCGA-86-8358-01 15 40630016 40630016 G T C15orf52 Silent p.R242R 0.75 TCGA-86-8358-01 15 43250218 43250218 G A UBR1 Missense_Mutation p.H1610Y 0.71 tolerated(0.88) benign(0.024) TCGA-86-8358-01 15 45387646 45387646 G T DUOX2 Missense_Mutation p.L1410M 0.78 tolerated(0.24) possibly_damaging(0.819) TCGA-86-8358-01 15 54914579 54914579 C A UNC13C Missense_Mutation p.A2054D 0.84 deleterious_low_confidence(0.01) benign(0.064) TCGA-86-8358-01 15 55931849 55931849 T A PRTG Missense_Mutation p.Y772F 0.87 deleterious(0.04) probably_damaging(0.992) TCGA-86-8358-01 15 65316079 65316079 G A MTFMT Missense_Mutation p.P158L 0.66 deleterious(0.01) probably_damaging(0.923) TCGA-86-8358-01 15 65347233 65347233 G T RASL12 3'UTR 0.73 TCGA-86-8358-01 15 74363330 74363330 G C GOLGA6A Missense_Mutation p.A668G 0.11 deleterious(0) benign(0.387) TCGA-86-8358-01 15 75658918 75658918 C A MAN2C1 Missense_Mutation p.G123C 0.33 deleterious(0) probably_damaging(0.973) TCGA-86-8358-01 15 83932756 83932756 G T BNC1 Missense_Mutation p.P416Q 0.80 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 15 84237416 84237416 C A SH3GL3 Missense_Mutation p.S108Y 0.65 deleterious(0) probably_damaging(1) TCGA-86-8358-01 15 84237417 84237417 C A SH3GL3 Silent p.S108S 0.64 TCGA-86-8358-01 15 85341641 85341641 T A ZNF592 Missense_Mutation p.V891D 0.19 deleterious(0) possibly_damaging(0.872) TCGA-86-8358-01 15 86814851 86814851 G T AGBL1 Silent p.G617G 0.71 TCGA-86-8358-01 15 92671693 92671693 G A SLCO3A1 Missense_Mutation p.A496T 0.45 deleterious(0.01) possibly_damaging(0.811) TCGA-86-8358-01 15 93496749 93496749 G C CHD2 Missense_Mutation p.W555C 0.30 deleterious(0.01) possibly_damaging(0.898) TCGA-86-8358-01 15 99901705 99901705 G T LRRC28 Missense_Mutation p.S287I 0.50 tolerated(0.2) benign(0.002) TCGA-86-8358-01 15 99901706 99901706 C T LRRC28 Silent p.S287S 0.50 TCGA-86-8358-01 16 10031980 10031980 G A GRIN2A Silent p.Y281Y 0.37 TCGA-86-8358-01 16 11000999 11000999 G T CIITA Silent p.R550R 0.29 TCGA-86-8358-01 16 1255246 1255246 G T CACNA1H Missense_Mutation p.G862C 0.50 deleterious(0) probably_damaging(0.98) TCGA-86-8358-01 16 1255247 1255247 G T CACNA1H Missense_Mutation p.G862V 0.49 deleterious(0) possibly_damaging(0.828) TCGA-86-8358-01 16 1306324 1306324 G T TPSD1 Missense_Mutation p.A15S 0.38 tolerated(0.17) unknown(0) TCGA-86-8358-01 16 17202621 17202621 G A XYLT1 Silent p.A937A 0.23 TCGA-86-8358-01 16 18863669 18863669 C A SMG1 Missense_Mutation p.R1628S 0.37 deleterious(0.01) benign(0.067) TCGA-86-8358-01 16 20955856 20955856 G T DNAH3 Missense_Mutation p.L3825I 0.44 tolerated(0.39) probably_damaging(0.988) TCGA-86-8358-01 16 22161179 22161179 C A VWA3A Missense_Mutation p.A1019E 0.67 tolerated(0.11) possibly_damaging(0.459) TCGA-86-8358-01 16 24788543 24788543 G C TNRC6A Missense_Mutation p.R151S 0.50 deleterious(0) benign(0.237) TCGA-86-8358-01 16 29918369 29918369 G T KCTD13 Missense_Mutation p.P272T 0.31 tolerated(0.56) benign(0.109) TCGA-86-8358-01 16 30490663 30490663 G C ITGAL Missense_Mutation p.G153R 0.41 deleterious(0.01) benign(0.031) TCGA-86-8358-01 16 31332813 31332813 A T ITGAM Missense_Mutation p.I624F 0.26 deleterious(0) benign(0.138) TCGA-86-8358-01 16 3142081 3142081 G T ZSCAN10 Silent p.P156P 0.49 TCGA-86-8358-01 16 31434493 31434493 G T ITGAD Nonsense_Mutation p.E947* 0.28 TCGA-86-8358-01 16 3170333 3170333 A G ZNF205 3'UTR 0.33 TCGA-86-8358-01 16 32893954 32893954 C A RP11-989E6.3 5'Flank 0.15 TCGA-86-8358-01 16 3294277 3294277 C A MEFV Missense_Mutation p.R579L 0.25 tolerated(0.07) benign(0.111) TCGA-86-8358-01 16 3304458 3304458 G T MEFV Missense_Mutation p.R204S 0.23 deleterious(0.02) possibly_damaging(0.785) TCGA-86-8358-01 16 3900443 3900443 C A CREBBP Missense_Mutation p.R218I 0.30 probably_damaging(0.991) TCGA-86-8358-01 16 4016167 4016167 T C ADCY9 Missense_Mutation p.D1224G 0.18 deleterious(0) benign(0.347) TCGA-86-8358-01 16 56423147 56423147 G C AMFR Missense_Mutation p.A409G 0.56 tolerated(0.27) benign(0.009) TCGA-86-8358-01 16 633311 633311 A T PIGQ Missense_Mutation p.S654C 0.30 deleterious_low_confidence(0) benign(0.326) TCGA-86-8358-01 16 67702446 67702446 G C C16orf86 Missense_Mutation p.K299N 0.77 deleterious(0) possibly_damaging(0.607) TCGA-86-8358-01 16 70070470 70070470 A T PDXDC2P RNA 0.14 TCGA-86-8358-01 16 70076259 70076259 C A PDXDC2P RNA 0.38 TCGA-86-8358-01 16 70894059 70894059 A T HYDIN Missense_Mutation p.I4014N 0.17 benign(0.005) TCGA-86-8358-01 16 72094555 72094555 G A HP Silent p.G329G 0.88 TCGA-86-8358-01 16 76523735 76523735 G T CNTNAP4 Nonsense_Mutation p.E606* 0.71 TCGA-86-8358-01 16 81819701 81819701 C T PLCG2 Missense_Mutation p.S36F 0.79 tolerated(0.06) benign(0.001) TCGA-86-8358-01 16 84270968 84270968 G A KCNG4 Missense_Mutation p.R42W 0.78 deleterious(0) possibly_damaging(0.628) TCGA-86-8358-01 16 89169021 89169021 C T ACSF3 Silent p.L226L 0.80 TCGA-86-8358-01 16 89169122 89169122 G A ACSF3 Nonsense_Mutation p.W259* 0.16 TCGA-86-8358-01 16 89603565 89603565 G C SPG7 Intron 0.75 TCGA-86-8358-01 16 89924885 89924885 G T SPIRE2 Missense_Mutation p.L414F 0.85 deleterious(0) probably_damaging(0.997) TCGA-86-8358-01 16 9928001 9928001 T A GRIN2A Missense_Mutation p.S580C 0.44 deleterious(0) probably_damaging(0.997) TCGA-86-8358-01 17 18141033 18141033 C G LLGL1 Missense_Mutation p.T617S 0.23 deleterious(0.01) probably_damaging(0.915) TCGA-86-8358-01 17 18151882 18151882 C T FLII Silent p.P724P 0.33 TCGA-86-8358-01 17 1840378 1840378 G A RTN4RL1 Silent p.A246A 0.67 TCGA-86-8358-01 17 1840534 1840534 C A RTN4RL1 Silent p.R194R 0.71 TCGA-86-8358-01 17 18681917 18681917 T G FBXW10 Missense_Mutation p.L822R 0.51 deleterious(0) probably_damaging(0.98) TCGA-86-8358-01 17 20358694 20358694 G C LGALS9B Silent p.P154P 0.26 TCGA-86-8358-01 17 21207838 21207838 G A MAP2K3 Missense_Mutation p.M223I 0.13 tolerated(0.55) benign(0.006) TCGA-86-8358-01 17 21319642 21319642 G T KCNJ12 Missense_Mutation p.V330L 0.10 tolerated(0.12) benign(0.303) TCGA-86-8358-01 17 21731020 21731020 G T UBBP4 Missense_Mutation p.D108Y 0.48 deleterious(0.04) probably_damaging(0.963) TCGA-86-8358-01 17 25630661 25630661 G T WSB1 Nonsense_Mutation p.G160* 0.35 TCGA-86-8358-01 17 25948960 25948960 A T KSR1 Nonstop_Mutation p.*763Lext*14 0.52 TCGA-86-8358-01 17 33520781 33520781 C G SLC35G3 Missense_Mutation p.E182D 0.06 tolerated(0.25) benign(0.398) TCGA-86-8358-01 17 33802110 33802110 C A SLFN12L Silent p.S533S 0.45 TCGA-86-8358-01 17 34199241 34199241 G T CCL5 3'UTR 0.19 TCGA-86-8358-01 17 34304735 34304735 G T CCL16 Missense_Mutation p.T77N 0.44 deleterious(0) benign(0.255) TCGA-86-8358-01 17 34862945 34862945 G A MYO19 Nonsense_Mutation p.Q501* 0.35 TCGA-86-8358-01 17 36709070 36709070 C A SRCIN1 Missense_Mutation p.E741D 0.31 tolerated(0.07) probably_damaging(0.998) TCGA-86-8358-01 17 36962607 36962607 C A CWC25 Missense_Mutation p.R315M 0.30 deleterious(0) benign(0.133) TCGA-86-8358-01 17 37762571 37762571 G T NEUROD2 Missense_Mutation p.D94E 0.65 tolerated(0.51) benign(0) TCGA-86-8358-01 17 39034459 39034459 T C KRT20 Missense_Mutation p.I359M 0.42 deleterious(0.01) possibly_damaging(0.544) TCGA-86-8358-01 17 39038822 39038822 A T KRT20 Splice_Site p.X158_splice 0.45 TCGA-86-8358-01 17 39165300 39165300 G A KRTAP3-1 Silent p.C9C 0.47 TCGA-86-8358-01 17 39280110 39280110 G A KRTAP4-12 Nonsense_Mutation p.Q89* 0.41 TCGA-86-8358-01 17 39525942 39525942 A T KRT33B Missense_Mutation p.C21S 0.34 tolerated(0.05) benign(0.392) TCGA-86-8358-01 17 39551619 39551619 C T KRT31 Missense_Mutation p.E252K 0.42 deleterious(0.01) possibly_damaging(0.746) TCGA-86-8358-01 17 39567645 39567645 C T AC003958.2 RNA 0.52 TCGA-86-8358-01 17 39975632 39975632 G A FKBP10 Missense_Mutation p.G300S 0.42 tolerated(0.06) possibly_damaging(0.452) TCGA-86-8358-01 17 40257126 40257126 G T DHX58 Silent p.A437A 0.34 TCGA-86-8358-01 17 40915027 40915027 T A RAMP2 3'UTR 0.36 TCGA-86-8358-01 17 41835995 41835995 C A SOST Nonsense_Mutation p.E39* 0.46 TCGA-86-8358-01 17 42113520 42113520 G A LSM12 3'UTR 0.28 TCGA-86-8358-01 17 42455868 42455868 G A ITGA2B Silent p.S652S 0.32 TCGA-86-8358-01 17 43351872 43351872 C G MAP3K14 RNA 0.62 TCGA-86-8358-01 17 51901163 51901163 C A KIF2B Missense_Mutation p.R257S 0.35 deleterious(0) probably_damaging(1) TCGA-86-8358-01 17 56621440 56621440 G A C17orf47 Silent p.A36A 0.45 TCGA-86-8358-01 17 57228553 57228553 T A SKA2 Intron 0.71 TCGA-86-8358-01 17 59667853 59667853 G C NACA2 3'UTR 0.53 TCGA-86-8358-01 17 60342480 60342480 G T TBC1D3P2 3'Flank 0.15 TCGA-86-8358-01 17 61607738 61607738 A T KCNH6 Silent p.T170T 0.27 TCGA-86-8358-01 17 62006812 62006812 C A CD79B Missense_Mutation p.E192D 0.28 tolerated(0.16) benign(0.163) TCGA-86-8358-01 17 62290280 62290281 - C TEX2 Frame_Shift_Ins p.E433Gfs*3 0.26 TCGA-86-8358-01 17 63637170 63637170 C A CEP112 Missense_Mutation p.R904L 0.27 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 17 6374563 6374563 T C PITPNM3 Silent p.P514P 0.54 TCGA-86-8358-01 17 64025368 64025368 C T CEP112 Missense_Mutation p.R459H 0.13 tolerated(0.55) benign(0.01) TCGA-86-8358-01 17 64873421 64873421 C G CACNG5 5'UTR 0.61 TCGA-86-8358-01 17 64881147 64881147 G T CACNG5 Silent p.A206A 0.22 TCGA-86-8358-01 17 65174828 65174828 C T HELZ Silent p.R459R 0.28 TCGA-86-8358-01 17 65928032 65928032 C T BPTF Silent p.I2052I 0.13 TCGA-86-8358-01 17 66267740 66267740 G T SLC16A6 Silent p.G187G 0.61 TCGA-86-8358-01 17 6684077 6684077 G C FBXO39 Missense_Mutation p.R297P 0.72 tolerated(0.08) benign(0.271) TCGA-86-8358-01 17 67132284 67132284 A T ABCA6 Missense_Mutation p.L137I 0.67 deleterious(0.01) probably_damaging(0.956) TCGA-86-8358-01 17 67270188 67270188 G A ABCA5 Silent p.P892P 0.29 TCGA-86-8358-01 17 67305517 67305517 T A ABCA5 Missense_Mutation p.S119C 0.53 tolerated(0.19) probably_damaging(0.981) TCGA-86-8358-01 17 6902062 6902062 C A ALOX12 Missense_Mutation p.L150M 0.80 tolerated(0.25) benign(0.286) TCGA-86-8358-01 17 72297276 72297276 G T DNAI2 Missense_Mutation p.G319V 0.54 deleterious(0) probably_damaging(0.915) TCGA-86-8358-01 17 7256789 7256789 G T KCTD11 Silent p.L176L 0.77 TCGA-86-8358-01 17 73851356 73851356 G A WBP2 Missense_Mutation p.S8L 0.25 tolerated(0.06) benign(0.146) TCGA-86-8358-01 17 73915849 73915849 C G FBF1 Missense_Mutation p.E665Q 0.19 deleterious(0) probably_damaging(0.969) TCGA-86-8358-01 17 73945404 73945404 T C ACOX1 Missense_Mutation p.E541G 0.13 tolerated(0.08) benign(0.002) TCGA-86-8358-01 17 7577541 7577541 T A TP53 Missense_Mutation p.N247I 0.70 deleterious(0) probably_damaging(1) TCGA-86-8358-01 17 76501442 76501442 C T DNAH17 Missense_Mutation p.G1626D 0.27 benign(0.365) TCGA-86-8358-01 17 78265623 78265623 G T RNF213 Nonsense_Mutation p.G490* 0.57 TCGA-86-8358-01 17 79419842 79419842 G T RP11-1055B8.7 Silent p.T1470T 0.65 TCGA-86-8358-01 17 79684440 79684440 C A SLC25A10 Nonsense_Mutation p.Y182* 0.53 TCGA-86-8358-01 17 79916234 79916234 C T NOTUM Missense_Mutation p.G190E 0.19 deleterious(0) probably_damaging(1) TCGA-86-8358-01 17 80046105 80046105 T A FASN Missense_Mutation p.Y891F 0.23 deleterious(0) probably_damaging(0.996) TCGA-86-8358-01 17 80195044 80195044 C T SLC16A3 Missense_Mutation p.S133L 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-86-8358-01 17 80787882 80787882 T A ZNF750 3'UTR 0.38 TCGA-86-8358-01 18 18547804 18547804 T A ROCK1 Missense_Mutation p.N1034I 0.07 tolerated(0.23) probably_damaging(0.98) TCGA-86-8358-01 18 20602224 20602224 A T RBBP8 Missense_Mutation p.M863L 0.83 tolerated(0.17) benign(0.001) TCGA-86-8358-01 18 21474890 21474890 G T LAMA3 Missense_Mutation p.M1827I 0.11 benign(0.001) TCGA-86-8358-01 18 21531691 21531691 C T LAMA3 Missense_Mutation p.S3229L 0.81 probably_damaging(0.982) TCGA-86-8358-01 18 21711845 21711845 G C TTC39C Splice_Site p.X542_splice 0.25 TCGA-86-8358-01 18 21712655 21712655 G C TTC39C 3'UTR 0.38 TCGA-86-8358-01 18 22806812 22806812 G A ZNF521 Missense_Mutation p.T357M 0.76 deleterious_low_confidence(0.01) probably_damaging(0.964) TCGA-86-8358-01 18 28725699 28725699 G T DSC1 Missense_Mutation p.P272T 0.07 deleterious(0) probably_damaging(1) TCGA-86-8358-01 18 28986191 28986191 G A DSG4 Silent p.L596L 0.38 TCGA-86-8358-01 18 29648277 29648277 A C RNF125 Missense_Mutation p.E210A 0.16 deleterious(0.03) probably_damaging(0.993) TCGA-86-8358-01 18 30092564 30092564 C T WBP11P1 RNA 0.60 TCGA-86-8358-01 18 3135565 3135565 G T MYOM1 Missense_Mutation p.T730N 0.10 deleterious(0) probably_damaging(0.979) TCGA-86-8358-01 18 34647099 34647099 G C KIAA1328 Missense_Mutation p.G275R 0.13 tolerated(0.15) benign(0.072) TCGA-86-8358-01 18 34839128 34839128 G T CELF4 Intron 0.40 TCGA-86-8358-01 18 43535270 43535270 T C EPG5 Missense_Mutation p.E33G 0.09 tolerated_low_confidence(0.08) possibly_damaging(0.859) TCGA-86-8358-01 18 49867029 49867029 G T DCC 5'UTR 0.25 TCGA-86-8358-01 18 5291435 5291435 T C ZBTB14 Missense_Mutation p.T258A 0.18 tolerated(0.7) benign(0.002) TCGA-86-8358-01 18 55024371 55024371 G A ST8SIA3 Missense_Mutation p.G177E 0.10 probably_damaging(1) TCGA-86-8358-01 18 55240533 55240533 C G FECH Missense_Mutation p.D93H 0.22 deleterious(0) possibly_damaging(0.775) TCGA-86-8358-01 18 56204702 56204702 G A ALPK2 Missense_Mutation p.A906V 0.59 tolerated(0.07) possibly_damaging(0.489) TCGA-86-8358-01 18 56377243 56377243 C G MALT1 Nonsense_Mutation p.Y288* 0.49 TCGA-86-8358-01 18 56998708 56998708 G A LMAN1 Missense_Mutation p.H480Y 0.62 tolerated(1) possibly_damaging(0.606) TCGA-86-8358-01 18 59203766 59203766 T A CDH20 Missense_Mutation p.Y438N 0.20 tolerated(1) possibly_damaging(0.655) TCGA-86-8358-01 18 59912039 59912039 G T KIAA1468 Nonsense_Mutation p.E555* 0.57 TCGA-86-8358-01 18 61377441 61377441 G T SERPINB11 Missense_Mutation p.S5I 0.80 deleterious(0.02) benign(0.248) TCGA-86-8358-01 18 61377489 61377489 G T SERPINB11 Missense_Mutation p.S21I 0.57 deleterious(0.02) possibly_damaging(0.583) TCGA-86-8358-01 18 61569754 61569754 C A SERPINB2 Missense_Mutation p.F265L 0.54 tolerated(0.41) benign(0.035) TCGA-86-8358-01 18 63530136 63530136 G T CDH7 Missense_Mutation p.C616F 0.64 deleterious(0.01) benign(0.275) TCGA-86-8358-01 18 63547683 63547683 C A CDH7 Silent p.P637P 0.15 TCGA-86-8358-01 18 67860646 67860646 T A RTTN Silent p.A295A 0.65 TCGA-86-8358-01 18 6851037 6851037 G T ARHGAP28 Missense_Mutation p.R24L 0.63 tolerated(0.28) benign(0) TCGA-86-8358-01 18 74154840 74154840 C A ZNF516 Silent p.T57T 0.67 TCGA-86-8358-01 18 76755282 76755282 C A SALL3 Silent p.G1097G 0.56 TCGA-86-8358-01 18 77895672 77895672 G T ADNP2 Missense_Mutation p.R792S 0.48 tolerated(0.73) benign(0.002) TCGA-86-8358-01 19 10599903 10599903 C T KEAP1 Missense_Mutation p.G558E 0.87 deleterious(0.01) probably_damaging(1) TCGA-86-8358-01 19 10677701 10677701 C A CDKN2D 3'UTR 0.84 TCGA-86-8358-01 19 12866460 12866460 T A BEST2 Missense_Mutation p.L249Q 0.81 deleterious(0) probably_damaging(0.987) TCGA-86-8358-01 19 12936646 12936646 C A RTBDN Silent p.A220A 0.71 TCGA-86-8358-01 19 13445269 13445269 C A CACNA1A Missense_Mutation p.R374L 0.83 possibly_damaging(0.858) TCGA-86-8358-01 19 14006295 14006295 G C C19orf57 Silent p.P32P 0.77 TCGA-86-8358-01 19 15271407 15271407 A - NOTCH3 3'UTR 0.40 TCGA-86-8358-01 19 15739116 15739116 G T CYP4F8 RNA 0.51 TCGA-86-8358-01 19 15871632 15871632 C A LLNLR-249E10.1 RNA 0.74 TCGA-86-8358-01 19 17104275 17104275 C A CPAMD8 Missense_Mutation p.G453V 0.85 tolerated(0.21) benign(0.005) TCGA-86-8358-01 19 17644423 17644423 G T FAM129C Missense_Mutation p.G145C 0.69 deleterious(0.02) probably_damaging(0.982) TCGA-86-8358-01 19 18710582 18710582 C T CRLF1 Missense_Mutation p.G64R 0.90 tolerated(0.12) benign(0.101) TCGA-86-8358-01 19 19221686 19221686 G A SLC25A42 3'UTR 0.81 TCGA-86-8358-01 19 19637067 19637067 C T NDUFA13 Silent p.R57R 0.14 TCGA-86-8358-01 19 21606406 21606406 T C ZNF493 Silent p.H315H 0.82 TCGA-86-8358-01 19 22586284 22586284 C G ZNF98 Missense_Mutation p.E21Q 0.76 deleterious(0.01) probably_damaging(0.992) TCGA-86-8358-01 19 23927112 23927112 T A ZNF681 Missense_Mutation p.S414C 0.72 deleterious(0.03) benign(0.37) TCGA-86-8358-01 19 30935460 30935460 G T ZNF536 Missense_Mutation p.G331C 0.44 deleterious(0) probably_damaging(1) TCGA-86-8358-01 19 30936548 30936548 C T ZNF536 Silent p.N693N 0.49 TCGA-86-8358-01 19 30936627 30936627 C A ZNF536 Missense_Mutation p.P720T 0.25 deleterious(0.04) probably_damaging(0.998) TCGA-86-8358-01 19 31038993 31038993 G A ZNF536 Missense_Mutation p.D823N 0.47 deleterious(0.02) benign(0.388) TCGA-86-8358-01 19 31039535 31039535 C T ZNF536 Silent p.C1003C 0.47 TCGA-86-8358-01 19 31048130 31048130 G T ZNF536 3'UTR 0.35 TCGA-86-8358-01 19 31767509 31767509 G T TSHZ3 Missense_Mutation p.H1064N 0.47 deleterious(0) probably_damaging(0.998) TCGA-86-8358-01 19 32949337 32949337 C T DPY19L3 Missense_Mutation p.T415I 0.37 deleterious(0.01) possibly_damaging(0.845) TCGA-86-8358-01 19 33703799 33703799 G T SLC7A10 Missense_Mutation p.P156T 0.53 deleterious(0.02) possibly_damaging(0.72) TCGA-86-8358-01 19 34263062 34263062 G T CHST8 Silent p.A123A 0.44 TCGA-86-8358-01 19 35449726 35449726 T A ZNF792 Nonsense_Mutation p.K345* 0.53 TCGA-86-8358-01 19 36018920 36018920 C G SBSN Missense_Mutation p.Q88H 0.47 tolerated(0.07) probably_damaging(0.995) TCGA-86-8358-01 19 36227600 36227600 C T KMT2B Missense_Mutation p.S2390L 0.16 benign(0.124) TCGA-86-8358-01 19 36234925 36234925 T C U2AF1L4 Intron 0.50 TCGA-86-8358-01 19 36370111 36370111 G T APLP1 Missense_Mutation p.V617L 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-86-8358-01 19 36399168 36399168 G T TYROBP 5'UTR 0.40 TCGA-86-8358-01 19 36884661 36884661 C G ZFP82 Missense_Mutation p.G194A 0.13 tolerated(0.06) probably_damaging(0.975) TCGA-86-8358-01 19 37101549 37101549 C A ZNF382 Intron 0.35 TCGA-86-8358-01 19 37118372 37118372 T C ZNF382 Missense_Mutation p.C525R 0.21 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 19 3738615 3738615 G A TJP3 Silent p.L458L 0.74 TCGA-86-8358-01 19 38200657 38200657 C A ZNF607 Missense_Mutation p.V26F 0.30 tolerated(0.11) benign(0.005) TCGA-86-8358-01 19 38573529 38573529 G A SIPA1L3 Missense_Mutation p.V442M 0.37 deleterious(0) possibly_damaging(0.902) TCGA-86-8358-01 19 38621396 38621396 G T SIPA1L3 Missense_Mutation p.D1043Y 0.35 deleterious(0) probably_damaging(0.993) TCGA-86-8358-01 19 38974004 38974004 G T RYR1 Silent p.L1594L 0.27 TCGA-86-8358-01 19 38976770 38976770 C A RYR1 Missense_Mutation p.H1825Q 0.48 benign(0.072) TCGA-86-8358-01 19 39433156 39433156 C G FBXO17 3'UTR 0.48 TCGA-86-8358-01 19 39590885 39590885 T C PAPL Missense_Mutation p.L175P 0.42 deleterious(0) possibly_damaging(0.841) TCGA-86-8358-01 19 39911931 39911931 G T PLEKHG2 Nonsense_Mutation p.G499* 0.60 TCGA-86-8358-01 19 39911932 39911932 G T PLEKHG2 Missense_Mutation p.G499V 0.61 tolerated_low_confidence(0.15) benign(0.027) TCGA-86-8358-01 19 39913963 39913963 G A PLEKHG2 Missense_Mutation p.D757N 0.45 deleterious_low_confidence(0.01) benign(0.118) TCGA-86-8358-01 19 39989984 39989984 G A DLL3 Silent p.E74E 0.59 TCGA-86-8358-01 19 40172730 40172730 T C AC093063.3 5'Flank 0.38 TCGA-86-8358-01 19 40316676 40316676 G T DYRK1B Missense_Mutation p.H523Q 0.19 tolerated_low_confidence(0.08) possibly_damaging(0.63) TCGA-86-8358-01 19 40886227 40886227 C T HIPK4 Intron 0.75 TCGA-86-8358-01 19 41778033 41778033 G T HNRNPUL1 Silent p.P155P 0.15 TCGA-86-8358-01 19 43258433 43258433 C G PSG8 3'UTR 0.07 TCGA-86-8358-01 19 43439647 43439647 G T PSG7 Silent p.T113T 0.81 TCGA-86-8358-01 19 43519507 43519507 G A PSG11 Missense_Mutation p.P242L 0.74 deleterious(0) probably_damaging(0.94) TCGA-86-8358-01 19 43689065 43689065 G T PSG5 Missense_Mutation p.T100K 0.83 deleterious(0.05) benign(0.09) TCGA-86-8358-01 19 44280783 44280783 C T KCNN4 Silent p.A55A 0.16 TCGA-86-8358-01 19 44844683 44844683 T A ZNF112 Silent p.T9T 0.86 TCGA-86-8358-01 19 44892226 44892226 T A ZNF285 Nonsense_Mutation p.K61* 0.81 TCGA-86-8358-01 19 45477749 45477749 G C CLPTM1 Silent p.T121T 0.81 TCGA-86-8358-01 19 45774827 45774827 G T MARK4 Missense_Mutation p.C216F 0.06 deleterious(0) possibly_damaging(0.873) TCGA-86-8358-01 19 45912960 45912960 C G ERCC1 3'Flank 0.67 TCGA-86-8358-01 19 46318943 46318943 C A SYMPK Missense_Mutation p.G1234C 0.94 deleterious_low_confidence(0.01) benign(0.024) TCGA-86-8358-01 19 47656282 47656282 A G SAE1 Missense_Mutation p.E171G 0.23 deleterious(0.02) benign(0.193) TCGA-86-8358-01 19 47823227 47823227 G T C5AR1 Nonsense_Mutation p.E65* 0.79 TCGA-86-8358-01 19 47969538 47969538 C A SLC8A2 Silent p.G41G 0.79 TCGA-86-8358-01 19 49224015 49224015 G A RASIP1 3'UTR 0.85 TCGA-86-8358-01 19 4930801 4930801 G T MIR4747 5'Flank 0.67 TCGA-86-8358-01 19 50247551 50247551 C A TSKS Missense_Mutation p.R433I 0.89 deleterious(0) probably_damaging(0.998) TCGA-86-8358-01 19 50384543 50384543 C T TBC1D17 Missense_Mutation p.P113L 0.75 tolerated(0.26) benign(0.063) TCGA-86-8358-01 19 50399197 50399198 - A IL4I1 Frame_Shift_Ins p.E65* 0.47 TCGA-86-8358-01 19 50838142 50838142 C T NAPSB RNA 0.52 TCGA-86-8358-01 19 51274696 51274696 T A GPR32 Missense_Mutation p.L280Q 0.86 deleterious(0) probably_damaging(0.944) TCGA-86-8358-01 19 51361739 51361739 G T KLK3 Missense_Mutation p.C173F 0.90 deleterious(0) probably_damaging(0.995) TCGA-86-8358-01 19 51470521 51470521 G T KLK6 Missense_Mutation p.P34H 0.76 deleterious(0) probably_damaging(1) TCGA-86-8358-01 19 52002434 52002434 T G SIGLEC12 Silent p.G375G 0.80 TCGA-86-8358-01 19 52250122 52250122 C A FPR1 Silent p.L42L 0.85 TCGA-86-8358-01 19 52772824 52772824 G C ZNF766 5'UTR 0.79 TCGA-86-8358-01 19 53612319 53612319 G T ZNF415 Missense_Mutation p.P327T 0.59 deleterious(0.01) probably_damaging(0.975) TCGA-86-8358-01 19 53912911 53912911 C G ZNF765 3'UTR 0.07 TCGA-86-8358-01 19 54385747 54385747 C A PRKCG 5'UTR 0.82 TCGA-86-8358-01 19 54566998 54566998 C T VSTM1 Missense_Mutation p.G12R 0.78 deleterious(0) probably_damaging(0.996) TCGA-86-8358-01 19 54724570 54724570 G A LILRB3 Silent p.A362A 0.70 TCGA-86-8358-01 19 54744322 54744322 G A LILRA6 Silent p.A362A 0.15 TCGA-86-8358-01 19 54758764 54758764 G T LILRB5 Silent p.P363P 0.86 TCGA-86-8358-01 19 55105733 55105733 G T LILRA1 Silent p.L8L 0.13 TCGA-86-8358-01 19 55174414 55174414 G T LILRB4 5'UTR 0.89 TCGA-86-8358-01 19 55222040 55222040 A T AC098784.2 3'Flank 0.88 TCGA-86-8358-01 19 55297940 55297940 T A KIR2DL1 3'Flank 0.86 TCGA-86-8358-01 19 55453062 55453062 T C NLRP7 Silent p.L6L 0.14 TCGA-86-8358-01 19 56307571 56307571 G A NLRP11 Silent p.A739A 0.25 TCGA-86-8358-01 19 56466862 56466862 G T NLRP8 Missense_Mutation p.D480Y 0.79 deleterious(0.02) probably_damaging(0.972) TCGA-86-8358-01 19 56539562 56539562 T C NLRP5 Missense_Mutation p.C655R 0.81 tolerated(0.19) benign(0.086) TCGA-86-8358-01 19 56701795 56701795 T A ZSCAN5B Nonsense_Mutation p.K297* 0.79 TCGA-86-8358-01 19 58190173 58190173 G T ZSCAN4 Missense_Mutation p.C401F 0.84 deleterious(0) probably_damaging(1) TCGA-86-8358-01 19 58265420 58265420 G T ZNF776 Missense_Mutation p.V308F 0.80 tolerated(0.09) benign(0.192) TCGA-86-8358-01 19 58849727 58849728 GG T ZSCAN22 Frame_Shift_Del p.G171Yfs*169 0.45 TCGA-86-8358-01 19 6531264 6531264 G T TNFSF9 Missense_Mutation p.G73C 1.00 tolerated(0.1) possibly_damaging(0.57) TCGA-86-8358-01 19 6913762 6913762 G A EMR1 Silent p.E407E 0.07 TCGA-86-8358-01 19 7618870 7618870 G C PNPLA6 Silent p.T800T 0.84 TCGA-86-8358-01 19 8807962 8807962 C A ACTL9 Missense_Mutation p.A364S 0.86 tolerated(0.43) benign(0.001) TCGA-86-8358-01 19 8953623 8953623 C A MBD3L1 Missense_Mutation p.A90D 0.76 deleterious(0.04) possibly_damaging(0.906) TCGA-86-8358-01 19 9047942 9047942 C A MUC16 Missense_Mutation p.S11230I 0.74 benign(0.402) TCGA-86-8358-01 19 9069689 9069689 G T MUC16 Silent p.P5919P 0.69 TCGA-86-8358-01 19 9213343 9213343 G T OR7G2 Missense_Mutation p.L214I 0.79 deleterious(0.03) benign(0.209) TCGA-86-8358-01 19 9213344 9213344 G T OR7G2 Silent p.T213T 0.80 TCGA-86-8358-01 19 9577375 9577375 G T ZNF560 Missense_Mutation p.R750S 0.77 tolerated(0.76) benign(0.015) TCGA-86-8358-01 19 9577765 9577765 G T ZNF560 Silent p.R620R 0.83 TCGA-86-8358-01 1 101704510 101704510 C A S1PR1 5'UTR 0.52 TCGA-86-8358-01 1 103354445 103354445 G T COL11A1 Missense_Mutation p.P1499T 0.09 unknown(0) TCGA-86-8358-01 1 103467481 103467481 T G COL11A1 Missense_Mutation p.K714N 0.15 unknown(0) TCGA-86-8358-01 1 103471677 103471677 C A COL11A1 Missense_Mutation p.G580C 0.21 unknown(0) TCGA-86-8358-01 1 109191484 109191484 C A HENMT1 Nonsense_Mutation p.E296* 0.39 TCGA-86-8358-01 1 109849517 109849517 C G MYBPHL Missense_Mutation p.G33R 0.29 tolerated(0.69) benign(0.002) TCGA-86-8358-01 1 109849645 109849645 C A MYBPHL 5'UTR 0.45 TCGA-86-8358-01 1 111061111 111061111 T A KCNA10 Missense_Mutation p.Q100L 0.30 deleterious(0.03) benign(0.091) TCGA-86-8358-01 1 114682278 114682278 G A SYT6 Silent p.T72T 0.42 TCGA-86-8358-01 1 115319023 115319023 C A SIKE1 Missense_Mutation p.V160F 0.30 deleterious(0) possibly_damaging(0.831) TCGA-86-8358-01 1 11561834 11561834 A T PTCHD2 Missense_Mutation p.Y262F 0.27 tolerated(0.45) benign(0.001) TCGA-86-8358-01 1 120306919 120306919 G T HMGCS2 Silent p.L145L 0.22 TCGA-86-8358-01 1 12144548 12144548 G A TNFRSF8 Missense_Mutation p.G31R 0.43 tolerated(0.72) benign(0.031) TCGA-86-8358-01 1 12885339 12885339 C T PRAMEF11 Missense_Mutation p.V258I 0.65 tolerated(0.27) benign(0.001) TCGA-86-8358-01 1 12907682 12907682 C A HNRNPCL1 Missense_Mutation p.R154L 0.19 deleterious(0.04) benign(0.079) TCGA-86-8358-01 1 14106295 14106295 C G PRDM2 Missense_Mutation p.L669V 0.27 probably_damaging(0.977) TCGA-86-8358-01 1 142713458 142713458 G T RP11-417J8.6 RNA 0.39 TCGA-86-8358-01 1 142803549 142803549 G T RP11-423O2.5 RNA 0.09 TCGA-86-8358-01 1 144873993 144873993 G A PDE4DIP Missense_Mutation p.S1655F 0.18 deleterious(0.01) probably_damaging(0.988) TCGA-86-8358-01 1 145415492 145415493 - T HFE2 Frame_Shift_Ins p.S105Ffs*45 0.16 TCGA-86-8358-01 1 145765122 145765122 T G GPR89A Missense_Mutation p.Y422S 0.11 deleterious(0) probably_damaging(0.995) TCGA-86-8358-01 1 147380931 147380931 G T GJA8 Missense_Mutation p.E283D 0.38 tolerated(0.08) probably_damaging(0.913) TCGA-86-8358-01 1 150484274 150484274 C T ECM1 Silent p.R377R 0.19 TCGA-86-8358-01 1 150525637 150525637 C T ADAMTSL4 Silent p.Y114Y 0.17 TCGA-86-8358-01 1 150529143 150529143 T A ADAMTSL4 Silent p.A541A 0.35 TCGA-86-8358-01 1 152057969 152057969 G C TCHHL1 Missense_Mutation p.A730G 0.27 tolerated(0.16) possibly_damaging(0.703) TCGA-86-8358-01 1 152081140 152081140 A C TCHH Missense_Mutation p.L1518R 0.14 unknown(0) TCGA-86-8358-01 1 152190877 152190877 A T HRNR Missense_Mutation p.H1076Q 0.38 unknown(0) TCGA-86-8358-01 1 152277185 152277185 G C FLG Missense_Mutation p.H3393D 0.16 unknown(0) TCGA-86-8358-01 1 152278994 152278994 G T FLG Missense_Mutation p.P2790T 0.21 benign(0.441) TCGA-86-8358-01 1 152279943 152279943 C A FLG Missense_Mutation p.R2473S 0.15 probably_damaging(0.972) TCGA-86-8358-01 1 152283878 152283878 G A FLG Nonsense_Mutation p.Q1162* 0.16 TCGA-86-8358-01 1 152286930 152286931 - G FLG Frame_Shift_Ins p.R145Kfs*9 0.18 TCGA-86-8358-01 1 152325708 152325708 T A FLG2 Silent p.S1518S 0.37 TCGA-86-8358-01 1 152538332 152538332 A T LCE3E 3'UTR 0.25 TCGA-86-8358-01 1 152770507 152770507 C A LCE1D Missense_Mutation p.H79Q 0.35 unknown(0) TCGA-86-8358-01 1 154218751 154218751 C T UBAP2L Missense_Mutation p.S305F 0.25 deleterious(0.01) unknown(0) TCGA-86-8358-01 1 154525295 154525295 C T UBE2Q1 Missense_Mutation p.G244D 0.24 deleterious(0) probably_damaging(0.996) TCGA-86-8358-01 1 154544390 154544390 G C CHRNB2 Missense_Mutation p.R364P 0.31 tolerated(0.35) possibly_damaging(0.463) TCGA-86-8358-01 1 154962937 154962937 G A FLAD1 Missense_Mutation p.C496Y 0.14 deleterious(0.04) benign(0.296) TCGA-86-8358-01 1 155148068 155148068 C T TRIM46 Silent p.R90R 0.15 TCGA-86-8358-01 1 155148465 155148465 G T TRIM46 Missense_Mutation p.G143C 0.28 deleterious(0) probably_damaging(1) TCGA-86-8358-01 1 155884040 155884040 C T KIAA0907 Missense_Mutation p.D573N 0.28 deleterious(0) probably_damaging(0.981) TCGA-86-8358-01 1 156027835 156027835 G T LAMTOR2 Missense_Mutation p.G100C 0.17 tolerated(0.06) benign(0.019) TCGA-86-8358-01 1 156639929 156639929 C A NES Nonsense_Mutation p.E1351* 0.40 TCGA-86-8358-01 1 156880456 156880456 C A PEAR1 Nonsense_Mutation p.C624* 0.51 TCGA-86-8358-01 1 157106102 157106102 C G ETV3 Missense_Mutation p.G15R 0.45 deleterious(0.03) probably_damaging(0.996) TCGA-86-8358-01 1 157556223 157556223 G T FCRL4 Silent p.L290L 0.47 TCGA-86-8358-01 1 157803200 157803200 C T CD5L Missense_Mutation p.G274E 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-86-8358-01 1 158590079 158590079 T G SPTA1 Missense_Mutation p.K2100Q 0.45 tolerated(0.37) benign(0.291) TCGA-86-8358-01 1 158622410 158622410 G T SPTA1 Silent p.R1074R 0.29 TCGA-86-8358-01 1 158631160 158631160 T A SPTA1 Missense_Mutation p.H835L 0.51 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 1 159032371 159032371 G T AIM2 3'UTR 0.35 TCGA-86-8358-01 1 159166949 159166949 G T CADM3 Intron 0.21 TCGA-86-8358-01 1 159776394 159776395 - T FCRL6 Frame_Shift_Ins p.G15Wfs*17 0.28 TCGA-86-8358-01 1 159921458 159921458 G A SLAMF9 Missense_Mutation p.P288L 0.40 tolerated_low_confidence(1) benign(0.003) TCGA-86-8358-01 1 160604558 160604558 G T SLAMF1 Missense_Mutation p.T182N 0.34 tolerated(0.11) benign(0.374) TCGA-86-8358-01 1 160604684 160604684 T A SLAMF1 Missense_Mutation p.Q140L 0.49 deleterious(0.01) benign(0.174) TCGA-86-8358-01 1 160808277 160808277 G C CD244 Nonsense_Mutation p.Y271* 0.11 TCGA-86-8358-01 1 161022311 161022311 T A ARHGAP30 Missense_Mutation p.R287W 0.37 deleterious(0) probably_damaging(0.996) TCGA-86-8358-01 1 161494984 161494984 C A HSPA6 Missense_Mutation p.T179K 0.44 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-86-8358-01 1 161967784 161967784 C T OLFML2B Silent p.P435P 0.40 TCGA-86-8358-01 1 165380287 165380287 T G RXRG Missense_Mutation p.T228P 0.26 tolerated(0.06) benign(0.046) TCGA-86-8358-01 1 165380290 165380290 C A RXRG Missense_Mutation p.A227S 0.30 tolerated(0.32) benign(0.015) TCGA-86-8358-01 1 165514089 165514089 T A LRRC52 Missense_Mutation p.W186R 0.31 deleterious(0) probably_damaging(0.997) TCGA-86-8358-01 1 17298933 17298933 G T CROCC Nonsense_Mutation p.E2016* 0.65 TCGA-86-8358-01 1 173881080 173881080 G A SERPINC1 Nonsense_Mutation p.R161* 0.39 TCGA-86-8358-01 1 173886450 173886450 A T SERPINC1 5'UTR 0.62 TCGA-86-8358-01 1 175067680 175067680 G T TNN Missense_Mutation p.A690S 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-86-8358-01 1 175334406 175334406 G A TNR Missense_Mutation p.P776L 0.57 deleterious(0) probably_damaging(1) TCGA-86-8358-01 1 179460790 179460790 C A AXDND1 Missense_Mutation p.H737N 0.37 tolerated(0.08) benign(0.01) TCGA-86-8358-01 1 179590171 179590171 T C TDRD5 Missense_Mutation p.V306A 0.35 deleterious(0.02) possibly_damaging(0.792) TCGA-86-8358-01 1 179604989 179604989 C A TDRD5 Nonsense_Mutation p.S496* 0.38 TCGA-86-8358-01 1 179632615 179632615 A G TDRD5 Missense_Mutation p.R880G 0.48 tolerated(0.16) benign(0.001) TCGA-86-8358-01 1 181767984 181767984 C T CACNA1E 3'UTR 0.45 TCGA-86-8358-01 1 182850427 182850427 G T DHX9 Missense_Mutation p.A885S 0.37 tolerated(0.24) possibly_damaging(0.581) TCGA-86-8358-01 1 183711407 183711407 G C RGL1 Missense_Mutation p.V39L 0.35 tolerated(0.85) benign(0.001) TCGA-86-8358-01 1 183920140 183920140 C A COLGALT2 Splice_Site p.X379_splice 0.39 TCGA-86-8358-01 1 184764144 184764144 C T FAM129A Silent p.Q918Q 0.40 TCGA-86-8358-01 1 186008061 186008061 A T HMCN1 Silent p.S1984S 0.19 TCGA-86-8358-01 1 186055509 186055509 A T HMCN1 Nonsense_Mutation p.K3006* 0.50 TCGA-86-8358-01 1 18691801 18691801 A C IGSF21 Missense_Mutation p.S209R 0.52 tolerated(0.28) benign(0.38) TCGA-86-8358-01 1 190250821 190250821 G A BRINP3 Missense_Mutation p.S99F 0.20 tolerated(0.7) possibly_damaging(0.837) TCGA-86-8358-01 1 196946709 196946709 G T CFHR5 5'UTR 0.54 TCGA-86-8358-01 1 196967416 196967416 C A CFHR5 Missense_Mutation p.P377T 0.49 deleterious(0) possibly_damaging(0.75) TCGA-86-8358-01 1 197297552 197297552 A G CRB1 Missense_Mutation p.N24S 0.62 tolerated(0.82) benign(0.007) TCGA-86-8358-01 1 19969872 19969872 G A NBL1 Missense_Mutation p.G23S 0.22 tolerated_low_confidence(0.34) benign(0.001) TCGA-86-8358-01 1 200877000 200877000 C G C1orf106 Missense_Mutation p.L187V 0.34 tolerated(0.67) benign(0.015) TCGA-86-8358-01 1 201286764 201286764 A T PKP1 Missense_Mutation p.Q304L 0.46 deleterious(0.02) benign(0.414) TCGA-86-8358-01 1 20249179 20249179 A T PLA2G2E Missense_Mutation p.L37Q 0.22 deleterious(0) probably_damaging(0.995) TCGA-86-8358-01 1 204957970 204957970 C A NFASC Intron 0.27 TCGA-86-8358-01 1 207010117 207010117 T C IL19 Missense_Mutation p.I75T 0.55 tolerated(0.06) benign(0.441) TCGA-86-8358-01 1 208270130 208270130 C A PLXNA2 Missense_Mutation p.Q610H 0.26 tolerated(0.15) benign(0.076) TCGA-86-8358-01 1 211652374 211652374 G A RD3 3'UTR 0.67 TCGA-86-8358-01 1 216498790 216498790 G T USH2A Silent p.R334R 0.53 TCGA-86-8358-01 1 220219792 220219792 C A EPRS 5'UTR 0.62 TCGA-86-8358-01 1 22028008 22028008 C A USP48 Missense_Mutation p.D904Y 0.24 deleterious(0.01) benign(0.007) TCGA-86-8358-01 1 227073315 227073335 ATGATCAGCGTCATCGTGGTT - PSEN2 In_Frame_Del p.I146_M152del 0.29 TCGA-86-8358-01 1 228335979 228335979 G T GUK1 Intron 0.27 TCGA-86-8358-01 1 230472903 230472903 C A PGBD5 Silent p.T273T 0.22 TCGA-86-8358-01 1 231473257 231473257 A G EXOC8 Missense_Mutation p.Y79H 0.52 tolerated(0.1) probably_damaging(0.99) TCGA-86-8358-01 1 232002342 232002342 C T DISC1 3'UTR 0.18 TCGA-86-8358-01 1 235715445 235715445 G C GNG4 Silent p.P64P 0.58 TCGA-86-8358-01 1 236145043 236145043 C T NID1 Missense_Mutation p.G1032D 0.22 tolerated(0.05) probably_damaging(0.922) TCGA-86-8358-01 1 236145047 236145047 G T NID1 Missense_Mutation p.L1031I 0.24 tolerated(0.08) benign(0.097) TCGA-86-8358-01 1 236924324 236924324 G T ACTN2 Nonsense_Mutation p.E793* 0.29 TCGA-86-8358-01 1 237167587 237167587 C A MT1HL1 Missense_Mutation p.C29F 0.14 tolerated(0.06) unknown(0) TCGA-86-8358-01 1 237831200 237831200 G T RYR2 Missense_Mutation p.M2844I 0.60 benign(0.026) TCGA-86-8358-01 1 237831201 237831201 G C RYR2 Missense_Mutation p.A2845P 0.60 probably_damaging(0.999) TCGA-86-8358-01 1 237868566 237868566 T C RYR2 Missense_Mutation p.V3168A 0.17 possibly_damaging(0.755) TCGA-86-8358-01 1 240071545 240071545 T A CHRM3 Missense_Mutation p.L265H 0.64 deleterious(0) possibly_damaging(0.722) TCGA-86-8358-01 1 241753361 241753361 G A KMO Missense_Mutation p.M382I 0.21 tolerated(0.64) benign(0) TCGA-86-8358-01 1 241757665 241757665 T C OPN3 3'UTR 0.49 TCGA-86-8358-01 1 2450626 2450626 C A PANK4 Missense_Mutation p.V331L 0.34 tolerated(1) benign(0.007) TCGA-86-8358-01 1 247492594 247492594 C A ZNF496 Missense_Mutation p.R96L 0.32 tolerated(0.26) possibly_damaging(0.827) TCGA-86-8358-01 1 247592948 247592948 A T NLRP3 Missense_Mutation p.S740C 0.60 deleterious(0) possibly_damaging(0.612) TCGA-86-8358-01 1 247597426 247597426 G C NLRP3 Silent p.S783S 0.25 TCGA-86-8358-01 1 248436326 248436326 C A OR2T33 Missense_Mutation p.R264M 0.48 deleterious(0.01) probably_damaging(0.992) TCGA-86-8358-01 1 248458410 248458410 C A OR2T12 Missense_Mutation p.Q157H 0.18 tolerated(0.35) probably_damaging(1) TCGA-86-8358-01 1 248458594 248458594 C A OR2T12 Missense_Mutation p.G96V 0.37 deleterious(0.01) possibly_damaging(0.686) TCGA-86-8358-01 1 248458595 248458595 C A OR2T12 Missense_Mutation p.G96C 0.38 deleterious(0) probably_damaging(0.997) TCGA-86-8358-01 1 248525578 248525578 C G OR2T4 Nonsense_Mutation p.Y232* 0.56 TCGA-86-8358-01 1 27877071 27877071 G A AHDC1 Missense_Mutation p.P519L 0.52 deleterious(0) possibly_damaging(0.859) TCGA-86-8358-01 1 28233752 28233752 C A RPA2 Missense_Mutation p.Q53H 0.17 deleterious(0) benign(0.431) TCGA-86-8358-01 1 32740506 32740506 G A LCK Intron 0.57 TCGA-86-8358-01 1 32782332 32782332 C T HDAC1 Missense_Mutation p.R77C 0.49 deleterious(0.02) possibly_damaging(0.759) TCGA-86-8358-01 1 33276518 33276518 C T YARS Silent p.G66G 0.15 TCGA-86-8358-01 1 35260505 35260505 C A GJA4 Missense_Mutation p.L231M 0.42 deleterious(0) probably_damaging(1) TCGA-86-8358-01 1 39788298 39788298 A G MACF1 Missense_Mutation p.M1355V 0.07 probably_damaging(0.945) TCGA-86-8358-01 1 41092230 41092230 G A RIMS3 Nonsense_Mutation p.Q296* 0.33 TCGA-86-8358-01 1 41450645 41450645 T A CTPS1 Missense_Mutation p.L107M 0.40 deleterious(0.01) probably_damaging(0.927) TCGA-86-8358-01 1 41618289 41618289 T A SCMH1 Missense_Mutation p.I20F 0.23 tolerated_low_confidence(0.36) benign(0.029) TCGA-86-8358-01 1 41976631 41976631 C A HIVEP3 Missense_Mutation p.A2238S 0.59 probably_damaging(0.994) TCGA-86-8358-01 1 43788391 43788391 T A TIE1 Nonstop_Mutation p.*1139Rext*29 0.38 TCGA-86-8358-01 1 43890087 43890087 C T SZT2 Missense_Mutation p.L819F 0.30 deleterious(0) probably_damaging(0.994) TCGA-86-8358-01 1 44437843 44437843 C T DPH2 Silent p.H394H 0.15 TCGA-86-8358-01 1 45295398 45295398 C A PTCH2 Missense_Mutation p.S324I 0.36 deleterious(0.01) possibly_damaging(0.714) TCGA-86-8358-01 1 47746795 47746795 C G STIL Missense_Mutation p.L445F 0.11 tolerated(0.24) benign(0.209) TCGA-86-8358-01 1 53535629 53535629 C A PODN Silent p.G82G 0.62 TCGA-86-8358-01 1 57185863 57185863 C T C1orf168 Missense_Mutation p.R705H 0.48 deleterious(0) probably_damaging(1) TCGA-86-8358-01 1 60297839 60297839 G C HOOK1 Missense_Mutation p.S76T 0.41 deleterious(0.04) benign(0.036) TCGA-86-8358-01 1 62703855 62703855 G T KANK4 3'UTR 0.50 TCGA-86-8358-01 1 64038194 64038194 A T EFCAB7 3'UTR 0.29 TCGA-86-8358-01 1 67194970 67194970 A C SGIP1 Missense_Mutation p.E589A 0.54 deleterious(0) possibly_damaging(0.898) TCGA-86-8358-01 1 67337072 67337072 T A WDR78 Missense_Mutation p.K307N 0.24 deleterious(0.02) possibly_damaging(0.544) TCGA-86-8358-01 1 74670732 74670732 G T FPGT Missense_Mutation p.R334M 0.17 deleterious(0) probably_damaging(0.993) TCGA-86-8358-01 1 75038040 75038040 G T C1orf173 Silent p.P1118P 0.25 TCGA-86-8358-01 1 75055641 75055641 C A C1orf173 Missense_Mutation p.R617M 0.22 deleterious(0) benign(0.008) TCGA-86-8358-01 1 7724158 7724158 C A CAMTA1 Silent p.P517P 0.25 TCGA-86-8358-01 1 7725036 7725036 C A CAMTA1 Missense_Mutation p.A810E 0.53 deleterious_low_confidence(0.01) benign(0.274) TCGA-86-8358-01 1 78325063 78325063 G C FAM73A Missense_Mutation p.A394P 0.12 deleterious(0) probably_damaging(0.994) TCGA-86-8358-01 1 84815512 84815512 T C SAMD13 3'UTR 0.29 TCGA-86-8358-01 1 86581052 86581052 C A COL24A1 Missense_Mutation p.G501C 0.21 deleterious(0) probably_damaging(1) TCGA-86-8358-01 1 86889847 86889847 A G CLCA2 5'UTR 0.21 TCGA-86-8358-01 1 86919206 86919206 T A CLCA2 Silent p.I770I 0.43 TCGA-86-8358-01 1 89273112 89273112 A G PKN2 Silent p.E640E 0.09 TCGA-86-8358-01 1 9107749 9107749 G A SLC2A5 Missense_Mutation p.A113V 0.23 deleterious(0.01) probably_damaging(0.986) TCGA-86-8358-01 1 91843634 91843634 G C HFM1 Missense_Mutation p.A448G 0.22 tolerated(0.47) benign(0.001) TCGA-86-8358-01 1 92789788 92789788 G T RPAP2 Missense_Mutation p.R437S 0.48 tolerated(0.41) benign(0.092) TCGA-86-8358-01 1 97272445 97272445 G T PTBP2 Missense_Mutation p.V368L 0.16 deleterious(0) benign(0.201) TCGA-86-8358-01 1 99771697 99771697 A T LPPR4 Nonsense_Mutation p.R475* 0.53 TCGA-86-8358-01 20 11904397 11904397 G T BTBD3 3'UTR 0.30 TCGA-86-8358-01 20 17705668 17705668 G A BANF2 Missense_Mutation p.E7K 0.27 tolerated(0.21) benign(0) TCGA-86-8358-01 20 23065771 23065771 G T CD93 Silent p.P353P 0.21 TCGA-86-8358-01 20 23472293 23472293 G T CST8 5'UTR 0.28 TCGA-86-8358-01 20 23584145 23584145 G A CST9 3'UTR 0.35 TCGA-86-8358-01 20 2384237 2384237 G T TGM6 Silent p.R368R 0.49 TCGA-86-8358-01 20 23860156 23860156 C A CST5 Missense_Mutation p.S53I 0.32 deleterious(0) possibly_damaging(0.803) TCGA-86-8358-01 20 2464825 2464825 C A ZNF343 Missense_Mutation p.R261M 0.48 deleterious(0) possibly_damaging(0.689) TCGA-86-8358-01 20 30407986 30407986 G T MYLK2 Missense_Mutation p.G37V 0.78 tolerated_low_confidence(0.13) benign(0.005) TCGA-86-8358-01 20 30785260 30785260 C A PLAGL2 Silent p.L162L 0.21 TCGA-86-8358-01 20 3251131 3251131 T C C20orf194 Missense_Mutation p.I910V 0.25 tolerated(0.2) benign(0.325) TCGA-86-8358-01 20 32664935 32664935 C T RALY Missense_Mutation p.R254W 0.28 deleterious_low_confidence(0) possibly_damaging(0.677) TCGA-86-8358-01 20 33876682 33876682 A T FAM83C Missense_Mutation p.V198D 0.48 deleterious(0) possibly_damaging(0.879) TCGA-86-8358-01 20 34572670 34572670 A T CNBD2 Missense_Mutation p.K229M 0.18 deleterious(0) probably_damaging(0.917) TCGA-86-8358-01 20 35381122 35381122 C A DSN1 3'UTR 0.29 TCGA-86-8358-01 20 36640474 36640474 C A TTI1 Missense_Mutation p.G582V 0.54 tolerated(0.12) benign(0.042) TCGA-86-8358-01 20 3677796 3677796 G C SIGLEC1 Nonsense_Mutation p.Y772* 0.20 TCGA-86-8358-01 20 3680041 3680041 T A SIGLEC1 Nonsense_Mutation p.R532* 0.33 TCGA-86-8358-01 20 36841786 36841786 C A KIAA1755 Missense_Mutation p.K1087N 0.56 deleterious(0.04) benign(0.347) TCGA-86-8358-01 20 37547006 37547006 G A PPP1R16B Silent p.P467P 0.17 TCGA-86-8358-01 20 44313396 44313396 G T WFDC10B 3'UTR 0.48 TCGA-86-8358-01 20 44536370 44536370 C A PLTP Missense_Mutation p.G192W 0.50 deleterious(0.01) probably_damaging(0.997) TCGA-86-8358-01 20 47253067 47253067 C A PREX1 Missense_Mutation p.W1367C 0.81 deleterious(0) possibly_damaging(0.738) TCGA-86-8358-01 20 50048686 50048686 C A NFATC2 Silent p.P880P 0.60 TCGA-86-8358-01 20 51872493 51872493 C T TSHZ2 Silent p.S832S 0.54 TCGA-86-8358-01 20 54972379 54972379 G T CSTF1 Missense_Mutation p.A96S 0.49 tolerated(0.19) benign(0.214) TCGA-86-8358-01 20 55209258 55209258 G C TFAP2C Missense_Mutation p.G286R 0.22 deleterious(0) probably_damaging(1) TCGA-86-8358-01 20 56993338 56993338 G T VAPB Missense_Mutation p.V44L 0.32 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 20 57567018 57567018 A G NELFCD Missense_Mutation p.E409G 0.57 tolerated(0.25) benign(0.034) TCGA-86-8358-01 20 57766386 57766386 G A ZNF831 Silent p.Q104Q 0.32 TCGA-86-8358-01 20 58496367 58496367 T A SYCP2 Missense_Mutation p.R56W 0.14 deleterious(0.04) probably_damaging(0.997) TCGA-86-8358-01 20 60793575 60793575 T C HRH3 Missense_Mutation p.Y130C 0.17 deleterious(0.02) probably_damaging(0.946) TCGA-86-8358-01 20 60900455 60900455 C A LAMA5 Missense_Mutation p.A1816S 0.38 benign(0.37) TCGA-86-8358-01 20 61512635 61512635 C A DIDO1 Missense_Mutation p.R1558M 0.56 probably_damaging(0.999) TCGA-86-8358-01 20 62737890 62737890 G C NPBWR2 Missense_Mutation p.P99A 0.57 deleterious(0.03) probably_damaging(0.932) TCGA-86-8358-01 21 15561443 15561443 C A LIPI Missense_Mutation p.R136L 0.88 deleterious(0) possibly_damaging(0.77) TCGA-86-8358-01 21 30257671 30257671 C A N6AMT1 5'UTR 0.76 TCGA-86-8358-01 21 30339204 30339204 C G LTN1 Missense_Mutation p.G583R 0.65 tolerated(0.56) benign(0.22) TCGA-86-8358-01 21 32525452 32525452 C A TIAM1 Missense_Mutation p.D1058Y 0.84 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 21 32525453 32525453 C A TIAM1 Splice_Site p.X1058_splice 0.84 TCGA-86-8358-01 21 39426793 39426793 C T DSCR4 3'UTR 0.88 TCGA-86-8358-01 21 39775464 39775464 C T ERG Missense_Mutation p.D193N 0.15 deleterious(0.04) possibly_damaging(0.836) TCGA-86-8358-01 21 41033420 41033420 G C B3GALT5 3'UTR 0.78 TCGA-86-8358-01 21 42748971 42748971 T C MX2 Silent p.P46P 0.92 TCGA-86-8358-01 21 45825049 45825049 G T TRPM2 Missense_Mutation p.G855W 0.85 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 21 46078127 46078127 G T KRTAP12-3 Missense_Mutation p.Q77H 0.92 deleterious(0) probably_damaging(0.979) TCGA-86-8358-01 22 16287903 16287903 G T POTEH 5'UTR 0.36 TCGA-86-8358-01 22 17619579 17619579 C T CECR5 Missense_Mutation p.V266M 0.32 tolerated(0.13) benign(0.058) TCGA-86-8358-01 22 18844903 18844903 G T BCRP7 RNA 0.14 TCGA-86-8358-01 22 19183811 19183811 C T CLTCL1 Nonsense_Mutation p.W1386* 0.51 TCGA-86-8358-01 22 19195814 19195814 C A CLTCL1 Missense_Mutation p.W1150C 0.42 deleterious(0.03) probably_damaging(0.972) TCGA-86-8358-01 22 19195815 19195815 C A CLTCL1 Missense_Mutation p.W1150L 0.42 tolerated(0.1) possibly_damaging(0.656) TCGA-86-8358-01 22 19209525 19209525 C T CLTCL1 Missense_Mutation p.R837K 0.10 tolerated(0.48) benign(0.024) TCGA-86-8358-01 22 20921055 20921055 C T MED15 Missense_Mutation p.A331V 0.12 tolerated_low_confidence(0.34) unknown(0) TCGA-86-8358-01 22 24086000 24086000 C A ZNF70 Missense_Mutation p.G443V 0.10 deleterious(0) benign(0.116) TCGA-86-8358-01 22 29708168 29708168 A T GAS2L1 3'Flank 0.43 TCGA-86-8358-01 22 32792121 32792121 C A RTCB Missense_Mutation p.M310I 0.70 deleterious(0) probably_damaging(1) TCGA-86-8358-01 22 35463013 35463013 G T ISX 5'UTR 0.64 TCGA-86-8358-01 22 37334575 37334575 G T CSF2RB 3'UTR 0.30 TCGA-86-8358-01 22 37492000 37492000 C A TMPRSS6 Missense_Mutation p.A188S 0.61 tolerated(0.82) benign(0.001) TCGA-86-8358-01 22 38122186 38122186 G T TRIOBP Missense_Mutation p.G1208V 0.70 deleterious_low_confidence(0) probably_damaging(1) TCGA-86-8358-01 22 40036947 40036947 G T CACNA1I Silent p.S272S 0.77 TCGA-86-8358-01 22 40055065 40055065 C A CACNA1I Silent p.T758T 0.83 TCGA-86-8358-01 22 41605644 41605644 C T L3MBTL2 Intron 0.85 TCGA-86-8358-01 22 51143400 51143400 G C SHANK3 Silent p.G651G 0.34 TCGA-86-8358-01 22 51160759 51160759 C T SHANK3 Missense_Mutation p.R1516C 0.27 probably_damaging(0.997) TCGA-86-8358-01 2 102486090 102486090 A T MAP4K4 Missense_Mutation p.T743S 0.38 tolerated_low_confidence(0.21) probably_damaging(0.997) TCGA-86-8358-01 2 103010974 103010974 G T IL18R1 Missense_Mutation p.R386L 0.26 tolerated(0.55) benign(0.28) TCGA-86-8358-01 2 103128688 103128688 C A SLC9A4 Silent p.I505I 0.31 TCGA-86-8358-01 2 105473124 105473124 G T POU3F3 Nonsense_Mutation p.E386* 0.41 TCGA-86-8358-01 2 108869811 108869811 C T SULT1C3 Silent p.F104F 0.11 TCGA-86-8358-01 2 113067564 113067564 A T ZC3H6 Missense_Mutation p.N147Y 0.30 tolerated(0.16) benign(0.009) TCGA-86-8358-01 2 11798750 11798750 G A NTSR2 Missense_Mutation p.S363F 0.25 deleterious(0) probably_damaging(0.937) TCGA-86-8358-01 2 120848001 120848001 G T EPB41L5 Nonsense_Mutation p.E318* 0.78 TCGA-86-8358-01 2 125204345 125204345 G T CNTNAP5 Missense_Mutation p.R250L 0.71 tolerated(0.66) benign(0.347) TCGA-86-8358-01 2 125660551 125660551 C A CNTNAP5 Missense_Mutation p.L1176M 0.67 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 2 128380917 128380917 G T MYO7B Silent p.L1236L 0.77 TCGA-86-8358-01 2 128628475 128628475 G A AMMECR1L Silent p.P182P 0.63 TCGA-86-8358-01 2 131704165 131704165 G A ARHGEF4 Silent p.T128T 0.75 TCGA-86-8358-01 2 135893221 135893221 G A RAB3GAP1 Missense_Mutation p.D548N 0.59 tolerated(0.33) benign(0.005) TCGA-86-8358-01 2 152553948 152553948 T C NEB Silent p.L427L 0.68 TCGA-86-8358-01 2 155711652 155711652 G T KCNJ3 Missense_Mutation p.G445C 0.67 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-86-8358-01 2 160673341 160673341 T C LY75-CD302 Silent p.L1452L 0.36 TCGA-86-8358-01 2 160901606 160901606 C A PLA2R1 Missense_Mutation p.V58F 0.34 tolerated(0.05) benign(0.211) TCGA-86-8358-01 2 162273126 162273126 C A TBR1 Missense_Mutation p.P69T 0.39 tolerated(0.15) benign(0.043) TCGA-86-8358-01 2 162273332 162273332 C T TBR1 Silent p.F137F 0.39 TCGA-86-8358-01 2 162279914 162279914 C T TBR1 Missense_Mutation p.P409S 0.35 deleterious(0.02) benign(0.026) TCGA-86-8358-01 2 165956928 165956928 A G SCN3A Silent p.L1284L 0.43 TCGA-86-8358-01 2 166223866 166223866 G T SCN2A Silent p.L1220L 0.49 TCGA-86-8358-01 2 168101943 168101943 G A XIRP2 Silent p.V1347V 0.39 TCGA-86-8358-01 2 168104334 168104334 T A XIRP2 Silent p.P2144P 0.20 TCGA-86-8358-01 2 168108117 168108117 G T XIRP2 Missense_Mutation p.Q3405H 0.39 benign(0.033) TCGA-86-8358-01 2 169780101 169780101 C A ABCB11 3'UTR 0.47 TCGA-86-8358-01 2 170027171 170027171 C A LRP2 Missense_Mutation p.R3757L 0.50 probably_damaging(1) TCGA-86-8358-01 2 172822981 172822981 C T HAT1 Silent p.Y221Y 0.42 TCGA-86-8358-01 2 172965286 172965286 C T DLX2 Silent p.A324A 0.45 TCGA-86-8358-01 2 176046222 176046222 A T ATP5G3 Intron 0.36 TCGA-86-8358-01 2 176981673 176981673 C T HOXD10 Missense_Mutation p.P38S 0.39 tolerated(0.68) probably_damaging(0.998) TCGA-86-8358-01 2 178988949 178988949 G T RBM45 Silent p.V388V 0.32 TCGA-86-8358-01 2 179424241 179424241 C A TTN Missense_Mutation p.G28873V 0.40 TCGA-86-8358-01 2 179434459 179434459 T A TTN Missense_Mutation p.E25467V 0.35 TCGA-86-8358-01 2 179454313 179454313 A T TTN Missense_Mutation p.D20713E 0.10 TCGA-86-8358-01 2 179571218 179571218 C T TTN Missense_Mutation p.E9795K 0.54 TCGA-86-8358-01 2 179575951 179575951 C A TTN Missense_Mutation p.G9338C 0.37 TCGA-86-8358-01 2 179593083 179593083 T C TTN Missense_Mutation p.M6490V 0.52 TCGA-86-8358-01 2 179612967 179612967 A G TTN Intron 0.42 TCGA-86-8358-01 2 182787005 182787005 G C SSFA2 Missense_Mutation p.A1181P 0.23 deleterious(0.05) possibly_damaging(0.9) TCGA-86-8358-01 2 185803418 185803418 C A ZNF804A Missense_Mutation p.H1099N 0.46 deleterious(0.01) probably_damaging(0.932) TCGA-86-8358-01 2 188228128 188228128 T G CALCRL Missense_Mutation p.N201T 0.19 deleterious(0) benign(0.262) TCGA-86-8358-01 2 188361770 188361770 A G TFPI Missense_Mutation p.F53L 0.39 tolerated(0.15) probably_damaging(0.969) TCGA-86-8358-01 2 190640197 190640197 C A ORMDL1 Intron 0.48 TCGA-86-8358-01 2 190656638 190656638 G T PMS1 Missense_Mutation p.A35S 0.31 deleterious(0) probably_damaging(0.997) TCGA-86-8358-01 2 196791228 196791228 C G DNAH7 Missense_Mutation p.W1178C 0.21 deleterious(0) probably_damaging(0.997) TCGA-86-8358-01 2 198436807 198436807 A G RFTN2 Silent p.S477S 0.39 TCGA-86-8358-01 2 200173646 200173646 T A SATB2 Missense_Mutation p.N526I 0.24 deleterious(0) possibly_damaging(0.842) TCGA-86-8358-01 2 202025397 202025397 C G CFLAR Missense_Mutation p.P346A 0.30 deleterious(0.01) probably_damaging(0.973) TCGA-86-8358-01 2 20202957 20202957 C T MATN3 Missense_Mutation p.G294E 0.52 deleterious(0) probably_damaging(1) TCGA-86-8358-01 2 206166581 206166581 G A PARD3B Intron 0.36 TCGA-86-8358-01 2 21232392 21232392 G C APOB Missense_Mutation p.L2450V 0.45 benign(0.014) TCGA-86-8358-01 2 215848574 215848574 C A ABCA12 Silent p.G1393G 0.41 TCGA-86-8358-01 2 217543651 217543651 G T IGFBP5 Silent p.S163S 0.21 TCGA-86-8358-01 2 217543652 217543652 G T IGFBP5 Missense_Mutation p.S163Y 0.21 tolerated(0.61) possibly_damaging(0.492) TCGA-86-8358-01 2 220420682 220420682 C G OBSL1 Intron 0.18 TCGA-86-8358-01 2 223066886 223066886 G T PAX3 Missense_Mutation p.H399Q 0.60 tolerated_low_confidence(0.25) benign(0.379) TCGA-86-8358-01 2 225635345 225635345 C A DOCK10 Missense_Mutation p.M2074I 0.56 deleterious(0.01) possibly_damaging(0.507) TCGA-86-8358-01 2 225670000 225670000 C T DOCK10 Missense_Mutation p.R1325Q 0.27 tolerated(0.12) probably_damaging(0.997) TCGA-86-8358-01 2 227968758 227968758 C A COL4A4 Missense_Mutation p.G249V 0.26 probably_damaging(1) TCGA-86-8358-01 2 227968759 227968759 C A COL4A4 Missense_Mutation p.G249C 0.26 probably_damaging(1) TCGA-86-8358-01 2 231264874 231264874 G T SP140L Silent p.R410R 0.31 TCGA-86-8358-01 2 231948445 231948445 G A PSMD1 Missense_Mutation p.D564N 0.41 deleterious(0.02) benign(0.411) TCGA-86-8358-01 2 233344828 233344828 G T ECEL1 3'UTR 0.33 TCGA-86-8358-01 2 233350867 233350867 G T ECEL1 Missense_Mutation p.A166E 0.50 tolerated(1) benign(0.008) TCGA-86-8358-01 2 233398943 233398943 C A CHRND Missense_Mutation p.P421Q 0.33 tolerated(0.29) probably_damaging(0.948) TCGA-86-8358-01 2 234527121 234527121 C A UGT1A8 Missense_Mutation p.D256E 0.34 deleterious(0.01) probably_damaging(0.993) TCGA-86-8358-01 2 238275448 238275448 G C COL6A3 Silent p.A1794A 0.27 TCGA-86-8358-01 2 241700757 241700757 C T KIF1A Nonsense_Mutation p.W718* 0.43 TCGA-86-8358-01 2 27462666 27462666 G T CAD Silent p.T1832T 0.41 TCGA-86-8358-01 2 27465740 27465740 G T CAD Nonsense_Mutation p.E2127* 0.42 TCGA-86-8358-01 2 27528552 27528552 G T TRIM54 Missense_Mutation p.R279L 0.43 tolerated(0.08) benign(0.009) TCGA-86-8358-01 2 27530300 27530300 C A UCN 3'UTR 0.53 TCGA-86-8358-01 2 27549496 27549496 T C GTF3C2 3'UTR 0.47 TCGA-86-8358-01 2 29293991 29293991 C A C2orf71 Missense_Mutation p.R1046L 0.43 deleterious(0.04) benign(0.011) TCGA-86-8358-01 2 31587069 31587069 C A XDH Silent p.V862V 0.45 TCGA-86-8358-01 2 39009075 39009075 A G GEMIN6 3'UTR 0.46 TCGA-86-8358-01 2 48026796 48026796 G T MSH6 Silent p.V558V 0.51 TCGA-86-8358-01 2 50280578 50280578 A C NRXN1 Missense_Mutation p.I1360R 0.40 tolerated(0.13) benign(0.383) TCGA-86-8358-01 2 50850583 50850583 G T NRXN1 Missense_Mutation p.L368M 0.37 deleterious(0) probably_damaging(1) TCGA-86-8358-01 2 61149604 61149604 A T REL Silent p.S598S 0.15 TCGA-86-8358-01 2 61542063 61542063 G A USP34 Missense_Mutation p.S1110F 0.40 deleterious(0.01) benign(0.165) TCGA-86-8358-01 2 69784100 69784100 A T AAK1 Silent p.A58A 0.22 TCGA-86-8358-01 2 71300695 71300695 G T NAGK Missense_Mutation p.V230F 0.42 deleterious(0) probably_damaging(0.981) TCGA-86-8358-01 2 7164644 7164644 G T RNF144A Silent p.L218L 0.23 TCGA-86-8358-01 2 71886041 71886041 C A DYSF Missense_Mutation p.P1597T 0.39 deleterious(0.04) possibly_damaging(0.452) TCGA-86-8358-01 2 73479952 73479952 C G CCT7 Missense_Mutation p.A532G 0.24 tolerated(0.2) benign(0.003) TCGA-86-8358-01 2 73681072 73681072 G T ALMS1 Missense_Mutation p.G2472V 0.51 possibly_damaging(0.678) TCGA-86-8358-01 2 79386511 79386511 C T REG3A Silent p.L7L 0.34 TCGA-86-8358-01 2 86075204 86075204 C - ST3GAL5 Frame_Shift_Del p.A148Pfs*40 0.34 TCGA-86-8358-01 2 89196826 89196826 C A IGKV5-2 Missense_Mutation p.H6N 0.15 deleterious(0.03) benign(0.002) TCGA-86-8358-01 2 96780812 96780812 C A ADRA2B Missense_Mutation p.Q359H 0.23 tolerated(0.54) benign(0.005) TCGA-86-8358-01 2 97875437 97875437 A T ANKRD36 Silent p.P1095P 0.13 TCGA-86-8358-01 2 99013798 99013798 T A CNGA3 3'UTR 0.45 TCGA-86-8358-01 2 99936171 99936171 A G TXNDC9 Missense_Mutation p.Y219H 0.40 tolerated(0.52) benign(0.008) TCGA-86-8358-01 3 100617729 100617729 C A ABI3BP Missense_Mutation p.R120L 0.27 deleterious(0) benign(0.25) TCGA-86-8358-01 3 111317006 111317006 G A CD96 Missense_Mutation p.A299T 0.34 deleterious(0.02) probably_damaging(0.961) TCGA-86-8358-01 3 111785273 111785273 C T TMPRSS7 Silent p.F404F 0.36 TCGA-86-8358-01 3 112324500 112324500 C T CCDC80 Missense_Mutation p.G873R 0.41 deleterious(0) probably_damaging(1) TCGA-86-8358-01 3 112968605 112968605 C A BOC 5'UTR 0.27 TCGA-86-8358-01 3 119306732 119306732 G T ADPRH 3'UTR 0.41 TCGA-86-8358-01 3 119434406 119434406 T C MAATS1 Intron 0.18 TCGA-86-8358-01 3 121544910 121544910 G T IQCB1 Silent p.I127I 0.17 TCGA-86-8358-01 3 122003456 122003456 C A CASR Silent p.A895A 0.47 TCGA-86-8358-01 3 122630826 122630826 G C SEMA5B Missense_Mutation p.S1050C 0.42 tolerated(0.05) possibly_damaging(0.451) TCGA-86-8358-01 3 124393414 124393414 G A KALRN Silent p.A473A 0.14 TCGA-86-8358-01 3 124627145 124627145 T C MUC13 Missense_Mutation p.D462G 0.24 deleterious(0.01) possibly_damaging(0.614) TCGA-86-8358-01 3 129270135 129270135 C A H1FOO Silent p.P331P 0.37 TCGA-86-8358-01 3 129370402 129370402 C A TMCC1 Silent p.V628V 0.46 TCGA-86-8358-01 3 130189806 130189806 T A COL6A5 Silent p.T2523T 0.29 TCGA-86-8358-01 3 133654686 133654686 C A SLCO2A1 Silent p.R582R 0.38 TCGA-86-8358-01 3 137849718 137849718 G T A4GNT Missense_Mutation p.D127E 0.33 tolerated(0.29) benign(0.097) TCGA-86-8358-01 3 138669285 138669285 G C C3orf72 Silent p.A133A 0.29 TCGA-86-8358-01 3 142281470 142281470 A C ATR Silent p.L258L 0.13 TCGA-86-8358-01 3 142775241 142775241 G T U2SURP Missense_Mutation p.Q1013H 0.61 tolerated(0.18) unknown(0) TCGA-86-8358-01 3 147114090 147114090 C A ZIC4 Silent p.P129P 0.50 TCGA-86-8358-01 3 150129010 150129010 G T TSC22D2 Missense_Mutation p.A625S 0.42 tolerated(0.11) benign(0.005) TCGA-86-8358-01 3 152150694 152150694 A T MBNL1 Silent p.R178R 0.42 TCGA-86-8358-01 3 154861310 154861311 - T MME Frame_Shift_Ins p.R425Efs*13 0.27 TCGA-86-8358-01 3 154889952 154889952 C A MME Missense_Mutation p.P676H 0.42 deleterious(0) probably_damaging(0.995) TCGA-86-8358-01 3 160285616 160285616 G T KPNA4 5'Flank 0.33 TCGA-86-8358-01 3 165547659 165547659 C T BCHE Missense_Mutation p.G388E 0.35 tolerated(0.91) benign(0.013) TCGA-86-8358-01 3 167754688 167754688 T A GOLIM4 Missense_Mutation p.Q260L 0.36 tolerated(0.21) benign(0.012) TCGA-86-8358-01 3 17052936 17052936 G T PLCL2 Missense_Mutation p.V574L 0.80 deleterious(0) probably_damaging(0.941) TCGA-86-8358-01 3 172482080 172482080 G T ECT2 Nonsense_Mutation p.E361* 0.45 TCGA-86-8358-01 3 179287990 179287990 G A ACTL6A Missense_Mutation p.E80K 0.48 tolerated(0.69) benign(0.034) TCGA-86-8358-01 3 179460065 179460065 G T USP13 Silent p.R487R 0.33 TCGA-86-8358-01 3 179501842 179501842 G T USP13 Silent p.V835V 0.34 TCGA-86-8358-01 3 179592153 179592153 C A PEX5L Nonsense_Mutation p.E230* 0.50 TCGA-86-8358-01 3 182590198 182590198 G T ATP11B Nonsense_Mutation p.E641* 0.40 TCGA-86-8358-01 3 183211929 183211929 C T KLHL6 Missense_Mutation p.D430N 0.38 tolerated(0.09) probably_damaging(0.983) TCGA-86-8358-01 3 183700298 183700298 T A ABCC5 Missense_Mutation p.I314F 0.35 tolerated(0.3) benign(0.03) TCGA-86-8358-01 3 184045221 184045221 C T EIF4G1 Missense_Mutation p.R1223C 0.39 deleterious(0) probably_damaging(0.943) TCGA-86-8358-01 3 186944247 186944247 C A MASP1 Silent p.P501P 0.50 TCGA-86-8358-01 3 19389226 19389226 G C KCNH8 Missense_Mutation p.V194L 0.70 tolerated(0.84) benign(0.035) TCGA-86-8358-01 3 194386359 194386359 G A LSG1 Nonsense_Mutation p.Q150* 0.11 TCGA-86-8358-01 3 194387271 194387271 T A LSG1 Missense_Mutation p.E86V 0.35 tolerated(0.06) benign(0.015) TCGA-86-8358-01 3 195515800 195515800 C A MUC4 Missense_Mutation p.R884I 0.36 unknown(0) TCGA-86-8358-01 3 196386988 196386988 G T NRROS Silent p.S158S 0.28 TCGA-86-8358-01 3 20156408 20156408 C T KAT2B Nonsense_Mutation p.Q360* 0.73 TCGA-86-8358-01 3 37544799 37544799 G T ITGA9 Splice_Site p.X248_splice 0.50 TCGA-86-8358-01 3 38622674 38622674 G C SCN5A Silent p.P992P 0.81 TCGA-86-8358-01 3 3887996 3887996 G T LRRN1 Silent p.S557S 0.29 TCGA-86-8358-01 3 39227604 39227604 G T XIRP1 Silent p.P1111P 0.70 TCGA-86-8358-01 3 39227605 39227605 G T XIRP1 Missense_Mutation p.P1111H 0.70 deleterious(0.01) possibly_damaging(0.781) TCGA-86-8358-01 3 51752296 51752296 A T GRM2 3'UTR 0.90 TCGA-86-8358-01 3 52476874 52476874 G A SEMA3G Silent p.S55S 0.67 TCGA-86-8358-01 3 52523629 52523629 C T NISCH Missense_Mutation p.L1131F 0.68 deleterious(0) probably_damaging(0.969) TCGA-86-8358-01 3 58178647 58178647 C A DNASE1L3 Intron 0.67 TCGA-86-8358-01 3 58178648 58178648 C A DNASE1L3 Intron 0.67 TCGA-86-8358-01 3 61734634 61734634 C T PTPRG Silent p.G56G 0.65 TCGA-86-8358-01 3 66436706 66436706 C A LRIG1 Missense_Mutation p.Q496H 0.13 deleterious(0.03) benign(0.211) TCGA-86-8358-01 3 93595823 93595823 C A PROS1 Silent p.L619L 0.37 TCGA-86-8358-01 3 97605506 97605506 C T CRYBG3 Missense_Mutation p.P447L 0.33 tolerated(0.09) benign(0.032) TCGA-86-8358-01 3 98217159 98217159 G A OR5K2 Missense_Mutation p.G212D 0.37 tolerated(0.07) benign(0.222) TCGA-86-8358-01 4 100349273 100349273 G T ADH7 Missense_Mutation p.N126K 0.47 deleterious(0.03) benign(0.073) TCGA-86-8358-01 4 100518297 100518297 A T MTTP Missense_Mutation p.N328I 0.42 deleterious(0.03) benign(0.18) TCGA-86-8358-01 4 100532390 100532390 C A MTTP Nonsense_Mutation p.Y620* 0.31 TCGA-86-8358-01 4 103822417 103822417 C T SLC9B1 Missense_Mutation p.V469M 0.05 deleterious(0) probably_damaging(0.968) TCGA-86-8358-01 4 109810405 109810405 G C COL25A1 Missense_Mutation p.P316R 0.40 tolerated(0.06) probably_damaging(1) TCGA-86-8358-01 4 109839346 109839346 T C COL25A1 Silent p.P254P 0.41 TCGA-86-8358-01 4 11400839 11400839 C T HS3ST1 Missense_Mutation p.R264H 0.33 deleterious(0.03) probably_damaging(0.974) TCGA-86-8358-01 4 115577984 115577984 G T UGT8 Intron 0.31 TCGA-86-8358-01 4 115997890 115997890 G T NDST4 Silent p.S101S 0.11 TCGA-86-8358-01 4 119161771 119161771 C G NDST3 Silent p.A737A 0.22 TCGA-86-8358-01 4 119951153 119951153 C T SYNPO2 Missense_Mutation p.T408I 0.21 deleterious(0) probably_damaging(1) TCGA-86-8358-01 4 123329111 123329111 G T ADAD1 Missense_Mutation p.S258I 0.11 deleterious(0.01) possibly_damaging(0.857) TCGA-86-8358-01 4 126371800 126371800 G T FAT4 Missense_Mutation p.G3210V 0.49 probably_damaging(1) TCGA-86-8358-01 4 134071186 134071186 G A PCDH10 5'UTR 0.25 TCGA-86-8358-01 4 134072611 134072611 G T PCDH10 Missense_Mutation p.G439V 0.39 deleterious(0) probably_damaging(1) TCGA-86-8358-01 4 13475983 13475983 T C RAB28 Missense_Mutation p.I74V 0.29 tolerated(0.13) benign(0.009) TCGA-86-8358-01 4 144135557 144135557 G T USP38 Missense_Mutation p.D810Y 0.38 deleterious(0.02) benign(0.285) TCGA-86-8358-01 4 145916440 145916440 C A ANAPC10 3'UTR 0.37 TCGA-86-8358-01 4 145916441 145916441 C A ANAPC10 3'UTR 0.36 TCGA-86-8358-01 4 153245479 153245479 C A FBXW7 Missense_Mutation p.G571V 0.43 deleterious(0) probably_damaging(0.998) TCGA-86-8358-01 4 153245480 153245480 C A FBXW7 Missense_Mutation p.G571W 0.44 deleterious(0) probably_damaging(1) TCGA-86-8358-01 4 153303400 153303400 C G FBXW7 Intron 0.28 TCGA-86-8358-01 4 155487111 155487111 C A FGB Missense_Mutation p.A89D 0.43 tolerated(0.26) benign(0.042) TCGA-86-8358-01 4 156634249 156634249 G T GUCY1A3 Splice_Site p.X363_splice 0.46 TCGA-86-8358-01 4 158256958 158256958 G C GRIA2 Missense_Mutation p.D468H 0.55 deleterious(0) probably_damaging(0.981) TCGA-86-8358-01 4 158281283 158281283 G C GRIA2 Missense_Mutation p.G760A 0.46 deleterious(0.01) benign(0.032) TCGA-86-8358-01 4 159616787 159616787 C A ETFDH Missense_Mutation p.L275M 0.17 deleterious(0.02) possibly_damaging(0.879) TCGA-86-8358-01 4 164394869 164394869 G T TKTL2 Silent p.A6A 0.38 TCGA-86-8358-01 4 165961674 165961674 C T TRIM60 Silent p.P150P 0.37 TCGA-86-8358-01 4 165962485 165962485 T A TRIM60 Missense_Mutation p.Y421N 0.45 deleterious(0.04) possibly_damaging(0.795) TCGA-86-8358-01 4 166416783 166416783 T A CPE Missense_Mutation p.L429Q 0.37 tolerated(0.41) probably_damaging(0.987) TCGA-86-8358-01 4 167658667 167658667 T A SPOCK3 Missense_Mutation p.R364S 0.34 deleterious(0) probably_damaging(0.977) TCGA-86-8358-01 4 169205970 169205970 C A DDX60 Splice_Site p.X521_splice 0.35 TCGA-86-8358-01 4 170912915 170912915 C T MFAP3L Missense_Mutation p.D282N 0.36 tolerated(0.24) benign(0.005) TCGA-86-8358-01 4 173734726 173734726 C G GALNTL6 Missense_Mutation p.P259A 0.21 deleterious(0) probably_damaging(1) TCGA-86-8358-01 4 187629379 187629379 T A FAT1 Missense_Mutation p.T535S 0.36 benign(0.008) TCGA-86-8358-01 4 189063588 189063588 C G TRIML1 Missense_Mutation p.I229M 0.46 tolerated(0.11) benign(0.11) TCGA-86-8358-01 4 20487838 20487838 C A SLIT2 Missense_Mutation p.N185K 0.10 deleterious(0) probably_damaging(0.998) TCGA-86-8358-01 4 3148599 3148599 G T HTT Silent p.L1073L 0.34 TCGA-86-8358-01 4 39408722 39408722 T A KLB Silent p.T51T 0.27 TCGA-86-8358-01 4 46995551 46995551 C A GABRA4 5'UTR 0.62 TCGA-86-8358-01 4 47938466 47938466 G T CNGA1 Missense_Mutation p.A751E 0.35 tolerated(0.13) benign(0.007) TCGA-86-8358-01 4 49005780 49005780 C T CWH43 Silent p.Y277Y 0.19 TCGA-86-8358-01 4 55133589 55133589 A T PDGFRA Missense_Mutation p.E298V 0.31 tolerated(0.1) benign(0.384) TCGA-86-8358-01 4 55971129 55971129 T A KDR Missense_Mutation p.Q556H 0.38 deleterious(0.03) benign(0.008) TCGA-86-8358-01 4 55976589 55976589 C A KDR Silent p.V412V 0.38 TCGA-86-8358-01 4 57335835 57335835 A G SRP72 Silent p.K42K 0.07 TCGA-86-8358-01 4 66467704 66467704 C A EPHA5 Missense_Mutation p.G189C 0.37 deleterious(0) probably_damaging(1) TCGA-86-8358-01 4 66535296 66535296 G T EPHA5 Silent p.A55A 0.33 TCGA-86-8358-01 4 68788574 68788574 G T TMPRSS11A Silent p.A200A 0.32 TCGA-86-8358-01 4 68919577 68919577 C T TMPRSS11F 3'UTR 0.38 TCGA-86-8358-01 4 68934444 68934444 C G TMPRSS11F Missense_Mutation p.G216A 0.24 deleterious(0.03) probably_damaging(0.998) TCGA-86-8358-01 4 69093777 69093777 C A TMPRSS11B Missense_Mutation p.G368V 0.26 deleterious(0) probably_damaging(0.997) TCGA-86-8358-01 4 70723321 70723321 G C SULT1E1 Silent p.V14V 0.34 TCGA-86-8358-01 4 71201323 71201323 C A CABS1 Missense_Mutation p.S189R 0.34 tolerated(0.07) benign(0.004) TCGA-86-8358-01 4 72102328 72102328 C T SLC4A4 Missense_Mutation p.S12F 0.53 tolerated(0.08) possibly_damaging(0.459) TCGA-86-8358-01 4 7436163 7436163 G T PSAPL1 Silent p.A148A 0.36 TCGA-86-8358-01 4 83748689 83748689 C T SEC31A Missense_Mutation p.A1042T 0.44 tolerated(0.22) benign(0.003) TCGA-86-8358-01 4 87680213 87680213 A T PTPN13 Missense_Mutation p.E1180D 0.24 tolerated(0.27) benign(0.101) TCGA-86-8358-01 4 88766516 88766516 G T MEPE Nonsense_Mutation p.E166* 0.54 TCGA-86-8358-01 4 90169364 90169364 C A GPRIN3 Missense_Mutation p.R633L 0.42 deleterious(0.01) probably_damaging(0.993) TCGA-86-8358-01 4 94159551 94159551 A G GRID2 Silent p.L385L 0.54 TCGA-86-8358-01 4 94750294 94750294 T A ATOH1 Missense_Mutation p.C73S 0.48 deleterious(0) probably_damaging(0.966) TCGA-86-8358-01 4 96091389 96091389 C T UNC5C Missense_Mutation p.R849Q 0.16 deleterious(0) probably_damaging(1) TCGA-86-8358-01 5 108207179 108207179 A G FER Missense_Mutation p.Y260C 0.31 deleterious(0) probably_damaging(0.979) TCGA-86-8358-01 5 112421001 112421001 C A MCC Nonsense_Mutation p.E469* 0.42 TCGA-86-8358-01 5 115336937 115336937 G T AQPEP Splice_Site p.X607_splice 0.30 TCGA-86-8358-01 5 120021734 120021734 G C PRR16 Missense_Mutation p.S59T 0.44 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-86-8358-01 5 121488259 121488259 G A ZNF474 Missense_Mutation p.E192K 0.40 tolerated(0.56) benign(0.293) TCGA-86-8358-01 5 127728888 127728888 G T FBN2 Missense_Mutation p.P469T 0.38 tolerated(0.13) benign(0.264) TCGA-86-8358-01 5 128862057 128862057 A T ADAMTS19 Missense_Mutation p.N326Y 0.31 tolerated(0.24) probably_damaging(0.979) TCGA-86-8358-01 5 129019848 129019848 C T ADAMTS19 Silent p.H894H 0.69 TCGA-86-8358-01 5 131329896 131329896 C A ACSL6 Missense_Mutation p.R33M 0.53 deleterious(0) possibly_damaging(0.851) TCGA-86-8358-01 5 133707234 133707234 G C UBE2B 5'UTR 0.78 TCGA-86-8358-01 5 137089563 137089563 T A HNRNPA0 Missense_Mutation p.M65L 0.81 deleterious(0) benign(0.034) TCGA-86-8358-01 5 140174688 140174688 C G PCDHA2 Missense_Mutation p.R47G 0.71 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-86-8358-01 5 140181221 140181221 C T PCDHA3 Nonsense_Mutation p.Q147* 0.17 TCGA-86-8358-01 5 140202807 140202807 G T PCDHA5 Missense_Mutation p.A483S 0.80 tolerated_low_confidence(0.06) possibly_damaging(0.453) TCGA-86-8358-01 5 140202852 140202852 G T PCDHA5 Missense_Mutation p.V498L 0.82 tolerated_low_confidence(0.06) benign(0.127) TCGA-86-8358-01 5 140202976 140202976 C T PCDHA5 Missense_Mutation p.A539V 0.86 deleterious_low_confidence(0.01) possibly_damaging(0.648) TCGA-86-8358-01 5 140209368 140209368 G T PCDHA6 Silent p.A564A 0.17 TCGA-86-8358-01 5 140209369 140209369 C T PCDHA6 Silent p.L565L 0.17 TCGA-86-8358-01 5 140237120 140237120 G A PCDHA10 Missense_Mutation p.R496Q 0.12 deleterious_low_confidence(0.02) probably_damaging(0.958) TCGA-86-8358-01 5 140250527 140250527 G T PCDHA11 Silent p.A613A 0.86 TCGA-86-8358-01 5 140433353 140433353 T C PCDHB1 Silent p.S766S 0.75 TCGA-86-8358-01 5 140476930 140476930 C A PCDHB2 3'UTR 0.80 TCGA-86-8358-01 5 140554760 140554760 G T PCDHB7 Nonsense_Mutation p.E782* 0.20 TCGA-86-8358-01 5 140558223 140558223 G T PCDHB8 Missense_Mutation p.R203L 0.26 deleterious_low_confidence(0.01) probably_damaging(0.956) TCGA-86-8358-01 5 140564195 140564195 T C PCDHB16 Silent p.T687T 0.74 TCGA-86-8358-01 5 140580339 140580339 C A PCDHB11 Missense_Mutation p.S331Y 0.68 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-86-8358-01 5 140719963 140719963 G C PCDHGA2 Silent p.T475T 0.14 TCGA-86-8358-01 5 140753885 140753885 C A PCDHGA6 Missense_Mutation p.P79T 0.82 deleterious_low_confidence(0.03) benign(0.024) TCGA-86-8358-01 5 140768134 140768134 T C PCDHGB4 Missense_Mutation p.I228T 0.75 deleterious(0) probably_damaging(0.986) TCGA-86-8358-01 5 1416277 1416277 C A SLC6A3 Missense_Mutation p.G323C 0.39 deleterious(0) probably_damaging(0.995) TCGA-86-8358-01 5 14489022 14489022 G C TRIO Intron 0.44 TCGA-86-8358-01 5 148989227 148989227 C A ARHGEF37 Silent p.R143R 0.80 TCGA-86-8358-01 5 156346551 156346551 G T TIMD4 Missense_Mutation p.L352I 0.62 tolerated(0.14) possibly_damaging(0.761) TCGA-86-8358-01 5 157216423 157216423 C A CLINT1 Missense_Mutation p.M511I 0.79 deleterious(0.04) benign(0.03) TCGA-86-8358-01 5 161113336 161113336 C A GABRA6 Missense_Mutation p.L47M 0.78 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 5 161300254 161300254 C A GABRA1 Missense_Mutation p.H129Q 0.69 deleterious(0.02) benign(0.068) TCGA-86-8358-01 5 169129342 169129342 C - DOCK2 Frame_Shift_Del p.Q432Kfs*42 0.43 TCGA-86-8358-01 5 169461402 169461402 G C DOCK2 Splice_Site p.X1156_splice 0.13 TCGA-86-8358-01 5 169672980 169672980 T A C5orf58 Missense_Mutation p.L58M 0.67 deleterious(0) probably_damaging(0.934) TCGA-86-8358-01 5 172581411 172581411 G T BNIP1 Missense_Mutation p.M131I 0.73 deleterious(0.02) benign(0.094) TCGA-86-8358-01 5 175813905 175813905 C A NOP16 Missense_Mutation p.K74N 0.26 tolerated(0.06) benign(0.051) TCGA-86-8358-01 5 178413298 178413298 G A GRM6 Missense_Mutation p.R653C 0.14 deleterious(0) probably_damaging(0.99) TCGA-86-8358-01 5 179227064 179227064 T C MGAT4B Missense_Mutation p.E282G 0.81 deleterious(0) probably_damaging(0.996) TCGA-86-8358-01 5 23526427 23526427 T C PRDM9 Silent p.N410N 0.12 TCGA-86-8358-01 5 24509928 24509928 G T CDH10 Missense_Mutation p.P335T 0.50 tolerated(0.11) benign(0.383) TCGA-86-8358-01 5 24593575 24593575 G A CDH10 Silent p.L9L 0.54 TCGA-86-8358-01 5 32789486 32789486 C A NPR3 3'UTR 0.44 TCGA-86-8358-01 5 33649049 33649049 C A ADAMTS12 Missense_Mutation p.D453Y 0.42 deleterious(0) probably_damaging(0.996) TCGA-86-8358-01 5 35039561 35039561 A G AGXT2 Missense_Mutation p.V77A 0.30 tolerated(0.75) benign(0.001) TCGA-86-8358-01 5 36117897 36117897 T A LMBRD2 Missense_Mutation p.L414F 0.40 deleterious(0) probably_damaging(1) TCGA-86-8358-01 5 37014784 37014784 G T NIPBL Splice_Site p.X1521_splice 0.33 TCGA-86-8358-01 5 37342741 37342741 C A NUP155 Missense_Mutation p.D335Y 0.42 deleterious(0) probably_damaging(0.998) TCGA-86-8358-01 5 37697862 37697862 T G WDR70 Intron 0.43 TCGA-86-8358-01 5 39119034 39119034 T C FYB Silent p.L791L 0.33 TCGA-86-8358-01 5 40936442 40936442 C A C7 Missense_Mutation p.Q95K 0.37 tolerated(0.13) possibly_damaging(0.669) TCGA-86-8358-01 5 41032899 41032899 C A MROH2B Missense_Mutation p.D796Y 0.52 deleterious(0) probably_damaging(0.919) TCGA-86-8358-01 5 41048527 41048527 G T MROH2B Missense_Mutation p.A528D 0.24 deleterious(0) benign(0.301) TCGA-86-8358-01 5 41160309 41160309 A C C6 Missense_Mutation p.L540R 0.41 deleterious(0.01) possibly_damaging(0.824) TCGA-86-8358-01 5 52358631 52358631 G - ITGA2 Frame_Shift_Del p.G492Vfs*20 0.26 TCGA-86-8358-01 5 5464213 5464213 G T KIAA0947 Missense_Mutation p.G1589V 0.39 deleterious(0.02) possibly_damaging(0.453) TCGA-86-8358-01 5 57755904 57755904 C A PLK2 5'UTR 0.44 TCGA-86-8358-01 5 60188846 60188846 G A ERCC8 Intron 0.31 TCGA-86-8358-01 5 63509792 63509792 G T RNF180 Missense_Mutation p.Q213H 0.37 tolerated(0.5) possibly_damaging(0.781) TCGA-86-8358-01 5 65340055 65340055 G C ERBB2IP Missense_Mutation p.D507H 0.38 tolerated(0.2) probably_damaging(0.933) TCGA-86-8358-01 5 66405926 66405926 G A MAST4 Missense_Mutation p.A453T 0.08 probably_damaging(0.977) TCGA-86-8358-01 5 68868340 68868340 C G GTF2H2C Missense_Mutation p.L145V 0.28 deleterious(0.03) probably_damaging(0.944) TCGA-86-8358-01 5 70751763 70751763 G T BDP1 Missense_Mutation p.R20M 0.38 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 5 70751764 70751764 G T BDP1 Missense_Mutation p.R20S 0.38 tolerated(0.12) probably_damaging(0.999) TCGA-86-8358-01 5 78251295 78251295 C A ARSB Missense_Mutation p.V241L 0.40 deleterious(0) probably_damaging(0.98) TCGA-86-8358-01 5 78338268 78338268 C T DMGDH Missense_Mutation p.R344Q 0.07 deleterious(0) probably_damaging(0.994) TCGA-86-8358-01 5 80521582 80521582 C G RASGRF2 Missense_Mutation p.P1236R 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-86-8358-01 5 80626092 80626092 T G ACOT12 3'UTR 0.47 TCGA-86-8358-01 5 90106336 90106336 G T GPR98 Nonsense_Mutation p.E5087* 0.39 TCGA-86-8358-01 6 100964120 100964120 C A ASCC3 Missense_Mutation p.G2004V 0.24 tolerated(0.28) benign(0.094) TCGA-86-8358-01 6 100964121 100964121 C A ASCC3 Nonsense_Mutation p.G2004* 0.24 TCGA-86-8358-01 6 107100441 107100441 G T QRSL1 Missense_Mutation p.C278F 0.19 tolerated(0.05) possibly_damaging(0.866) TCGA-86-8358-01 6 114378539 114378539 C A HS3ST5 Missense_Mutation p.S308I 0.43 deleterious(0) probably_damaging(0.989) TCGA-86-8358-01 6 116832866 116832866 G C FAM26E Missense_Mutation p.A3P 0.16 tolerated(0.23) possibly_damaging(0.5) TCGA-86-8358-01 6 118556735 118556735 T C SLC35F1 Missense_Mutation p.I138T 0.19 tolerated(0.25) benign(0.2) TCGA-86-8358-01 6 126333971 126333971 C T TRMT11 Missense_Mutation p.P327L 0.32 tolerated(0.21) benign(0.005) TCGA-86-8358-01 6 127911457 127911457 G T C6orf58 Silent p.V300V 0.40 TCGA-86-8358-01 6 129581891 129581891 A G LAMA2 Missense_Mutation p.Y711C 0.31 tolerated(0.06) possibly_damaging(0.684) TCGA-86-8358-01 6 129634131 129634131 C G LAMA2 Nonsense_Mutation p.Y1100* 0.30 TCGA-86-8358-01 6 130381180 130381180 G T L3MBTL3 Splice_Site p.X254_splice 0.29 TCGA-86-8358-01 6 132039849 132039849 G T ENPP3 Missense_Mutation p.G484C 0.30 deleterious(0) probably_damaging(1) TCGA-86-8358-01 6 132270415 132270415 C G CTGF Missense_Mutation p.D347H 0.29 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 6 134583196 134583196 G T SGK1 Missense_Mutation p.P54T 0.43 deleterious_low_confidence(0) benign(0) TCGA-86-8358-01 6 135254062 135254062 G A ALDH8A1 Missense_Mutation p.P234L 0.44 tolerated(0.3) benign(0.002) TCGA-86-8358-01 6 136667180 136667180 C G MAP7 Missense_Mutation p.V707L 0.09 tolerated(0.57) unknown(0) TCGA-86-8358-01 6 139164323 139164323 A T ECT2L Nonsense_Mutation p.K184* 0.49 TCGA-86-8358-01 6 144081661 144081661 G T PHACTR2 Missense_Mutation p.G193V 0.41 tolerated(0.27) probably_damaging(1) TCGA-86-8358-01 6 144416466 144416466 C A SF3B5 Nonsense_Mutation p.E57* 0.52 TCGA-86-8358-01 6 146125936 146125936 A G FBXO30 Missense_Mutation p.F536L 0.33 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 6 152476030 152476030 A - SYNE1 Frame_Shift_Del p.F8042Lfs*12 0.20 TCGA-86-8358-01 6 152651238 152651238 C A SYNE1 Missense_Mutation p.W4861L 0.50 probably_damaging(0.998) TCGA-86-8358-01 6 154480928 154480928 G C IPCEF1 3'UTR 0.71 TCGA-86-8358-01 6 154763227 154763227 C G CNKSR3 Silent p.L138L 0.45 TCGA-86-8358-01 6 157488304 157488304 G T ARID1B Missense_Mutation p.V1004L 0.26 benign(0.177) TCGA-86-8358-01 6 159403692 159403692 G A RSPH3 Missense_Mutation p.P316L 0.46 deleterious(0) probably_damaging(1) TCGA-86-8358-01 6 159420560 159420560 C A RSPH3 Missense_Mutation p.R150L 0.22 tolerated(0.07) benign(0.005) TCGA-86-8358-01 6 159687218 159687218 T C FNDC1 Missense_Mutation p.V1796A 0.49 deleterious(0) probably_damaging(0.998) TCGA-86-8358-01 6 160494825 160494825 G A IGF2R Missense_Mutation p.D1662N 0.39 deleterious(0) probably_damaging(1) TCGA-86-8358-01 6 160969553 160969553 C A LPA Silent p.P1704P 0.27 TCGA-86-8358-01 6 161012027 161012027 G T LPA Missense_Mutation p.P1246T 0.34 tolerated(0.55) benign(0.384) TCGA-86-8358-01 6 161519452 161519452 G C MAP3K4 Missense_Mutation p.D1223H 0.45 deleterious(0.01) possibly_damaging(0.841) TCGA-86-8358-01 6 167719496 167719496 A T UNC93A Nonsense_Mutation p.K312* 0.47 TCGA-86-8358-01 6 167728935 167728935 A T UNC93A Missense_Mutation p.M457L 0.14 tolerated_low_confidence(0.46) benign(0.001) TCGA-86-8358-01 6 17817340 17817340 G C KIF13A Silent p.P637P 0.16 TCGA-86-8358-01 6 18122755 18122755 A C NHLRC1 Missense_Mutation p.V28G 0.76 deleterious(0) probably_damaging(1) TCGA-86-8358-01 6 28269905 28269905 G A PGBD1 Nonsense_Mutation p.W758* 0.89 TCGA-86-8358-01 6 29627268 29627268 T C MOG Silent p.D87D 0.84 TCGA-86-8358-01 6 30140222 30140222 C A TRIM15 3'UTR 0.46 TCGA-86-8358-01 6 31548608 31548608 C A LTB Missense_Mutation p.V205L 0.88 tolerated(0.21) probably_damaging(0.947) TCGA-86-8358-01 6 31901533 31901533 T C CFB Missense_Mutation p.W135R 0.92 deleterious(0) benign(0.039) TCGA-86-8358-01 6 32053749 32053749 G A TNXB Missense_Mutation p.R976C 0.84 probably_damaging(0.996) TCGA-86-8358-01 6 32187964 32187964 C A NOTCH4 Silent p.L419L 0.86 TCGA-86-8358-01 6 32372945 32372945 G T BTNL2 Nonsense_Mutation p.Y66* 0.87 TCGA-86-8358-01 6 33177789 33177789 A G RING1 Missense_Mutation p.S113G 0.89 deleterious(0.01) benign(0.342) TCGA-86-8358-01 6 35090087 35090087 G C TCP11 Missense_Mutation p.Q142E 0.87 deleterious(0.01) probably_damaging(0.963) TCGA-86-8358-01 6 4087752 4087752 T A C6orf201 5'UTR 0.87 TCGA-86-8358-01 6 42162560 42162560 C A GUCA1B 5'UTR 0.61 TCGA-86-8358-01 6 43305930 43305930 T C ZNF318 Missense_Mutation p.R1936G 0.53 benign(0.018) TCGA-86-8358-01 6 44144651 44144651 G T CAPN11 Missense_Mutation p.D385Y 0.34 deleterious(0) possibly_damaging(0.64) TCGA-86-8358-01 6 45514747 45514747 C A RUNX2 Missense_Mutation p.P424Q 0.50 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 6 46135475 46135475 C A ENPP5 Silent p.T175T 0.56 TCGA-86-8358-01 6 47253707 47253707 C A TNFRSF21 Missense_Mutation p.V241F 0.36 deleterious(0.01) benign(0.14) TCGA-86-8358-01 6 47646847 47646847 C A GPR111 Missense_Mutation p.L150I 0.60 tolerated(0.08) probably_damaging(0.996) TCGA-86-8358-01 6 49582519 49582519 C A RHAG Missense_Mutation p.A230S 0.52 tolerated(0.45) probably_damaging(0.994) TCGA-86-8358-01 6 49660542 49660542 C A CRISP2 Nonsense_Mutation p.E226* 0.31 TCGA-86-8358-01 6 51491819 51491819 T G PKHD1 Missense_Mutation p.K3921Q 0.16 tolerated(0.11) benign(0.017) TCGA-86-8358-01 6 5216971 5216971 T A LYRM4 Missense_Mutation p.R29S 0.84 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 6 52883238 52883238 C - ICK Frame_Shift_Del p.A185Rfs*50 0.37 TCGA-86-8358-01 6 55142305 55142305 G T HCRTR2 Missense_Mutation p.R297L 0.22 deleterious(0) possibly_damaging(0.644) TCGA-86-8358-01 6 56510683 56510683 G A DST 5'Flank 0.31 TCGA-86-8358-01 6 57372298 57372298 G T PRIM2 Missense_Mutation p.R235M 0.11 deleterious(0) probably_damaging(0.996) TCGA-86-8358-01 6 70948954 70948954 T A COL9A1 Intron 0.33 TCGA-86-8358-01 6 70948955 70948955 A T COL9A1 Splice_Site p.X704_splice 0.32 TCGA-86-8358-01 6 71004105 71004105 A G COL9A1 Missense_Mutation p.V154A 0.36 unknown(0) TCGA-86-8358-01 6 71009791 71009791 A T COL9A1 Missense_Mutation p.V85E 0.30 unknown(0) TCGA-86-8358-01 6 7229492 7229492 A G RREB1 Missense_Mutation p.D387G 0.91 deleterious(0.05) benign(0.073) TCGA-86-8358-01 6 72960041 72960041 G T RIMS1 Missense_Mutation p.L750F 0.38 deleterious(0) probably_damaging(0.998) TCGA-86-8358-01 6 75884986 75884986 C A COL12A1 Silent p.T826T 0.34 TCGA-86-8358-01 6 76720889 76720889 C G IMPG1 Missense_Mutation p.G287A 0.15 deleterious(0) probably_damaging(0.985) TCGA-86-8358-01 6 79608092 79608092 A G IRAK1BP1 3'UTR 0.19 TCGA-86-8358-01 6 79726270 79726270 C A PHIP Missense_Mutation p.R409L 0.26 tolerated(0.12) benign(0.415) TCGA-86-8358-01 6 87725863 87725863 G T HTR1E Missense_Mutation p.D271Y 0.27 deleterious(0.05) possibly_damaging(0.903) TCGA-86-8358-01 6 88853845 88853845 A G CNR1 Silent p.S383S 0.30 TCGA-86-8358-01 6 90463860 90463860 C A MDN1 Missense_Mutation p.R969L 0.47 probably_damaging(0.973) TCGA-86-8358-01 6 90660405 90660405 G A BACH2 Missense_Mutation p.L474F 0.31 tolerated(0.09) probably_damaging(0.991) TCGA-86-8358-01 6 99283457 99283457 C A POU3F2 Missense_Mutation p.H236Q 0.33 tolerated(0.17) benign(0.206) TCGA-86-8358-01 6 99323339 99323339 C G FBXL4 Missense_Mutation p.D552H 0.40 tolerated(0.09) benign(0.024) TCGA-86-8358-01 7 100610432 100610432 G T MUC3A 3'UTR 0.30 TCGA-86-8358-01 7 101843431 101843431 G T CUX1 Nonsense_Mutation p.E692* 0.24 TCGA-86-8358-01 7 102246408 102246408 C T RASA4 Missense_Mutation p.E109K 0.16 tolerated(0.52) probably_damaging(0.956) TCGA-86-8358-01 7 103205846 103205847 - A RELN Frame_Shift_Ins p.V1697Cfs*59 0.29 TCGA-86-8358-01 7 11630187 11630187 C G THSD7A Missense_Mutation p.Q451H 0.24 tolerated(0.64) benign(0.008) TCGA-86-8358-01 7 116340087 116340087 C A MET Missense_Mutation p.L317I 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-86-8358-01 7 11676040 11676040 C A THSD7A Nonsense_Mutation p.E247* 0.64 TCGA-86-8358-01 7 117398005 117398005 C A CTTNBP2 Silent p.V1064V 0.30 TCGA-86-8358-01 7 121650872 121650872 C A PTPRZ1 Missense_Mutation p.P591H 0.43 deleterious_low_confidence(0.04) probably_damaging(0.94) TCGA-86-8358-01 7 121652131 121652131 G T PTPRZ1 Missense_Mutation p.D1011Y 0.50 deleterious_low_confidence(0) benign(0.426) TCGA-86-8358-01 7 123336783 123336783 G A WASL Missense_Mutation p.A160V 0.50 tolerated(0.25) unknown(0) TCGA-86-8358-01 7 123594234 123594234 A G SPAM1 Missense_Mutation p.I204V 0.38 deleterious(0) benign(0.403) TCGA-86-8358-01 7 126746583 126746583 C A GRM8 Missense_Mutation p.V232L 0.47 deleterious(0.01) probably_damaging(0.994) TCGA-86-8358-01 7 127229589 127229589 G T ARF5 Missense_Mutation p.D67Y 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-86-8358-01 7 127727085 127727085 C A SND1 Missense_Mutation p.F800L 0.49 tolerated(1) benign(0.003) TCGA-86-8358-01 7 128035026 128035026 G C IMPDH1 Missense_Mutation p.D489E 0.43 tolerated(0.19) benign(0.011) TCGA-86-8358-01 7 128370108 128370108 C A FAM71F1 Missense_Mutation p.L336M 0.42 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-86-8358-01 7 130008495 130008495 C T CPA5 3'UTR 0.44 TCGA-86-8358-01 7 132193157 132193157 C A PLXNA4 Missense_Mutation p.R99L 0.48 tolerated(0.72) benign(0.005) TCGA-86-8358-01 7 132659949 132659949 G A CHCHD3 Missense_Mutation p.R117C 0.09 deleterious(0) possibly_damaging(0.883) TCGA-86-8358-01 7 133943133 133943133 A T LRGUK Missense_Mutation p.S775C 0.37 deleterious(0.02) possibly_damaging(0.501) TCGA-86-8358-01 7 134136347 134136347 G A AKR1B1 Silent p.I75I 0.11 TCGA-86-8358-01 7 136699744 136699744 C A CHRM2 Silent p.V44V 0.35 TCGA-86-8358-01 7 142000795 142000795 G T TRBV2 5'UTR 0.38 TCGA-86-8358-01 7 142131559 142131559 A C TRBV5-6 Missense_Mutation p.F66V 0.50 tolerated(0.64) benign(0.007) TCGA-86-8358-01 7 142197571 142197571 C T TRBV11-2 RNA 0.12 TCGA-86-8358-01 7 142326756 142326756 C A TRBV19 Silent p.T18T 0.47 TCGA-86-8358-01 7 142566043 142566043 T C EPHB6 Missense_Mutation p.C655R 0.39 deleterious(0.04) benign(0.048) TCGA-86-8358-01 7 142569573 142569573 A T TRPV6 Missense_Mutation p.S689T 0.41 tolerated(0.13) benign(0.071) TCGA-86-8358-01 7 142625958 142625958 T - TRPV5 Frame_Shift_Del p.N197Tfs*58 0.27 TCGA-86-8358-01 7 143175616 143175616 C G TAS2R41 Missense_Mutation p.N217K 0.33 tolerated(0.1) possibly_damaging(0.642) TCGA-86-8358-01 7 143657821 143657821 G T OR2F1 Missense_Mutation p.G253V 0.48 deleterious(0) probably_damaging(0.99) TCGA-86-8358-01 7 143771333 143771333 C A OR2A25 Silent p.S7S 0.37 TCGA-86-8358-01 7 143807534 143807534 C A OR2A2 Missense_Mutation p.L287M 0.38 deleterious(0.03) possibly_damaging(0.636) TCGA-86-8358-01 7 149148096 149148096 T A ZNF777 Missense_Mutation p.S361C 0.20 deleterious(0) benign(0.372) TCGA-86-8358-01 7 149522430 149522430 G C SSPO RNA 0.35 TCGA-86-8358-01 7 150174422 150174422 T C GIMAP8 Silent p.L518L 0.50 TCGA-86-8358-01 7 150217354 150217354 G T GIMAP7 Missense_Mutation p.V98F 0.42 deleterious(0) probably_damaging(1) TCGA-86-8358-01 7 150696404 150696404 G C NOS3 Missense_Mutation p.E361D 0.43 deleterious(0) probably_damaging(0.951) TCGA-86-8358-01 7 150698450 150698450 C A NOS3 Missense_Mutation p.S455R 0.39 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 7 1523390 1523390 C A INTS1 Missense_Mutation p.G1177C 0.25 deleterious(0) possibly_damaging(0.895) TCGA-86-8358-01 7 152480280 152480280 A T ACTR3B Missense_Mutation p.K18M 0.22 deleterious(0) probably_damaging(1) TCGA-86-8358-01 7 154595624 154595624 C G DPP6 Missense_Mutation p.D486E 0.60 tolerated(0.59) benign(0.359) TCGA-86-8358-01 7 154595626 154595626 T G DPP6 Missense_Mutation p.V487G 0.52 deleterious(0) probably_damaging(0.986) TCGA-86-8358-01 7 156554848 156554848 G A LMBR1 Nonsense_Mutation p.Q222* 0.35 TCGA-86-8358-01 7 156798543 156798543 G A MNX1 Missense_Mutation p.R293W 0.22 deleterious(0) probably_damaging(1) TCGA-86-8358-01 7 157414098 157414099 CT TCC PTPRN2 Frame_Shift_Ins p.R767Gfs*17 0.24 TCGA-86-8358-01 7 20438509 20438509 G T ITGB8 Missense_Mutation p.Q391H 0.59 deleterious(0.01) possibly_damaging(0.89) TCGA-86-8358-01 7 21611514 21611514 G A DNAH11 Missense_Mutation p.E506K 0.61 benign(0.001) TCGA-86-8358-01 7 2418817 2418817 C T EIF3B Missense_Mutation p.R761W 0.23 deleterious(0.02) probably_damaging(0.982) TCGA-86-8358-01 7 24749964 24749964 C G DFNA5 Missense_Mutation p.K247N 0.40 deleterious(0.04) benign(0.124) TCGA-86-8358-01 7 24911637 24911637 C G OSBPL3 Missense_Mutation p.E50Q 0.28 tolerated(0.21) benign(0.082) TCGA-86-8358-01 7 2698074 2698074 G T TTYH3 Missense_Mutation p.A469S 0.27 deleterious(0.02) possibly_damaging(0.708) TCGA-86-8358-01 7 27168919 27168919 T C HOXA4 Silent p.K296K 0.46 TCGA-86-8358-01 7 27211532 27211532 A T HOXA10 Missense_Mutation p.F407I 0.13 deleterious(0.01) possibly_damaging(0.824) TCGA-86-8358-01 7 29983640 29983640 C T SCRN1 Nonsense_Mutation p.W186* 0.41 TCGA-86-8358-01 7 31142903 31142903 A T ADCYAP1R1 Missense_Mutation p.T395S 0.07 deleterious(0.01) benign(0.011) TCGA-86-8358-01 7 34086018 34086018 G T BMPER Splice_Site p.X226_splice 0.52 TCGA-86-8358-01 7 35673172 35673172 C A HERPUD2 3'UTR 0.40 TCGA-86-8358-01 7 37953992 37953992 C G SFRP4 Missense_Mutation p.C170S 0.44 tolerated(0.06) possibly_damaging(0.628) TCGA-86-8358-01 7 37955912 37955912 G A SFRP4 Silent p.F76F 0.41 TCGA-86-8358-01 7 39472801 39472801 C G POU6F2 Missense_Mutation p.I384M 0.39 deleterious(0) unknown(0) TCGA-86-8358-01 7 41729231 41729231 C G INHBA 3'UTR 0.10 TCGA-86-8358-01 7 43503285 43503285 C A HECW1 Missense_Mutation p.A893E 0.07 deleterious(0.01) possibly_damaging(0.839) TCGA-86-8358-01 7 43519229 43519229 C T HECW1 Silent p.N1040N 0.45 TCGA-86-8358-01 7 44073841 44073841 C A RASA4CP RNA 0.43 TCGA-86-8358-01 7 44150783 44150783 T C AEBP1 Missense_Mutation p.V554A 0.43 tolerated(0.09) benign(0.16) TCGA-86-8358-01 7 47917145 47917145 G C PKD1L1 Missense_Mutation p.P1202R 0.37 deleterious(0) probably_damaging(1) TCGA-86-8358-01 7 48356864 48356864 A T ABCA13 Missense_Mutation p.T3324S 0.33 benign(0.101) TCGA-86-8358-01 7 51287547 51287547 C A COBL Missense_Mutation p.G46W 0.14 deleterious(0.03) probably_damaging(0.994) TCGA-86-8358-01 7 53103356 53103356 C A POM121L12 5'UTR 0.53 TCGA-86-8358-01 7 56020943 56020943 G T MRPS17 Missense_Mutation p.G19W 0.76 deleterious(0.02) benign(0.416) TCGA-86-8358-01 7 5680882 5680882 A C RNF216 Missense_Mutation p.V762G 0.22 tolerated(0.16) benign(0.423) TCGA-86-8358-01 7 57187600 57187600 G T ZNF479 Missense_Mutation p.L508I 0.67 deleterious(0.01) possibly_damaging(0.744) TCGA-86-8358-01 7 57193805 57193805 T A ZNF479 Missense_Mutation p.K61M 0.25 deleterious(0.01) probably_damaging(0.921) TCGA-86-8358-01 7 6370522 6370522 T A FAM220A Missense_Mutation p.E88D 0.64 tolerated(0.13) probably_damaging(0.953) TCGA-86-8358-01 7 64167094 64167094 G T ZNF107 Nonsense_Mutation p.G138* 0.69 TCGA-86-8358-01 7 64292721 64292721 A C ZNF138 3'Flank 0.63 TCGA-86-8358-01 7 6731966 6731966 C T ZNF12 Missense_Mutation p.E203K 0.58 tolerated(0.06) benign(0.003) TCGA-86-8358-01 7 70800712 70800712 C A WBSCR17 Missense_Mutation p.P139T 0.53 deleterious(0.01) benign(0.179) TCGA-86-8358-01 7 71130416 71130416 C A WBSCR17 Missense_Mutation p.S367R 0.68 tolerated(0.15) probably_damaging(0.969) TCGA-86-8358-01 7 7283315 7283315 C A C1GALT1 Missense_Mutation p.A350E 0.22 tolerated(0.7) benign(0.001) TCGA-86-8358-01 7 72849512 72849512 G T FZD9 Missense_Mutation p.S392I 0.71 deleterious(0.01) probably_damaging(0.929) TCGA-86-8358-01 7 7545644 7545644 C A COL28A1 Splice_Site p.X342_splice 0.25 TCGA-86-8358-01 7 77256328 77256328 A G PTPN12 Silent p.Q444Q 0.87 TCGA-86-8358-01 7 81392079 81392079 A T HGF Silent p.T66T 0.68 TCGA-86-8358-01 7 82545774 82545774 C A PCLO Missense_Mutation p.R3843I 0.81 unknown(0) TCGA-86-8358-01 7 84727204 84727204 C G SEMA3D Missense_Mutation p.E77Q 0.68 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 7 883161 883161 A T SUN1 Intron 0.06 TCGA-86-8358-01 7 92733351 92733351 C A SAMD9 Missense_Mutation p.G687V 0.39 deleterious(0) probably_damaging(1) TCGA-86-8358-01 7 92760661 92760661 C A SAMD9L Nonsense_Mutation p.E1542* 0.73 TCGA-86-8358-01 7 92938212 92938212 G T CCDC132 Missense_Mutation p.R569L 0.53 tolerated(0.14) benign(0.008) TCGA-86-8358-01 7 97854379 97854379 G T TECPR1 Missense_Mutation p.A850D 0.50 deleterious(0.01) possibly_damaging(0.794) TCGA-86-8358-01 7 99258147 99258147 T C CYP3A5 Missense_Mutation p.E334G 0.14 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 7 99779761 99779761 C A STAG3 Missense_Mutation p.S55R 0.10 tolerated(0.35) benign(0.002) TCGA-86-8358-01 8 10102718 10102718 A G MSRA Missense_Mutation p.K106E 0.31 tolerated(1) benign(0.007) TCGA-86-8358-01 8 103317388 103317388 C G UBR5 Missense_Mutation p.G918R 0.32 deleterious(0) probably_damaging(0.998) TCGA-86-8358-01 8 104831844 104831844 C T RIMS2 Intron 0.30 TCGA-86-8358-01 8 110131526 110131526 A T TRHR Missense_Mutation p.N347Y 0.22 deleterious(0.04) benign(0.001) TCGA-86-8358-01 8 113299447 113299447 T A CSMD3 Silent p.P3059P 0.28 TCGA-86-8358-01 8 113650967 113650967 C T CSMD3 Missense_Mutation p.D1162N 0.23 deleterious(0.02) benign(0.4) TCGA-86-8358-01 8 11418941 11418941 G T BLK Missense_Mutation p.S387I 0.18 deleterious(0) possibly_damaging(0.511) TCGA-86-8358-01 8 11667314 11667314 G A FDFT1 Missense_Mutation p.M112I 0.30 tolerated(0.19) benign(0.009) TCGA-86-8358-01 8 117778951 117778951 G T UTP23 Missense_Mutation p.A37S 0.26 deleterious(0.05) benign(0.285) TCGA-86-8358-01 8 11851592 11851592 T C DEFB134 Missense_Mutation p.Y33C 0.19 tolerated_low_confidence(0.17) probably_damaging(0.98) TCGA-86-8358-01 8 120651057 120651057 T C ENPP2 5'UTR 0.10 TCGA-86-8358-01 8 121219331 121219331 G C COL14A1 Missense_Mutation p.E397Q 0.22 tolerated(0.07) probably_damaging(1) TCGA-86-8358-01 8 121243835 121243835 C A COL14A1 Missense_Mutation p.P776H 0.23 tolerated(0.16) benign(0.007) TCGA-86-8358-01 8 12956886 12956886 C A DLC1 Missense_Mutation p.G987V 0.58 deleterious(0) probably_damaging(1) TCGA-86-8358-01 8 132997196 132997196 G A EFR3A Silent p.E586E 0.64 TCGA-86-8358-01 8 133806683 133806683 C A PHF20L1 Missense_Mutation p.D37E 0.65 deleterious(0) probably_damaging(0.997) TCGA-86-8358-01 8 133899670 133899670 C T TG Missense_Mutation p.P685S 0.66 deleterious(0) probably_damaging(1) TCGA-86-8358-01 8 134225116 134225116 C A WISP1 Missense_Mutation p.P27T 0.23 tolerated(0.06) probably_damaging(0.981) TCGA-86-8358-01 8 139149465 139149465 G A FAM135B Missense_Mutation p.P1314S 0.23 tolerated(0.21) possibly_damaging(0.864) TCGA-86-8358-01 8 139180138 139180138 C T FAM135B Missense_Mutation p.G420R 0.19 deleterious(0.04) probably_damaging(0.937) TCGA-86-8358-01 8 139705901 139705901 T A COL22A1 Silent p.A914A 0.44 TCGA-86-8358-01 8 139820048 139820048 A T COL22A1 Missense_Mutation p.M486K 0.15 unknown(0) TCGA-86-8358-01 8 143614776 143614776 C A BAI1 Missense_Mutation p.D1173E 0.15 deleterious(0) possibly_damaging(0.739) TCGA-86-8358-01 8 143695349 143695349 A T ARC Missense_Mutation p.L95Q 0.67 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-86-8358-01 8 143846003 143846003 G T LYNX1 3'UTR 0.78 TCGA-86-8358-01 8 143956677 143956677 C A CYP11B1 Silent p.V391V 0.13 TCGA-86-8358-01 8 143958585 143958585 G C CYP11B1 Missense_Mutation p.S150W 0.13 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 8 143996546 143996546 C A CYP11B2 Missense_Mutation p.A171S 0.19 tolerated(0.32) benign(0.219) TCGA-86-8358-01 8 144993577 144993577 G C PLEC Missense_Mutation p.T3608R 0.53 probably_damaging(1) TCGA-86-8358-01 8 145111990 145111990 C T OPLAH Missense_Mutation p.A523T 0.89 deleterious(0.01) probably_damaging(0.943) TCGA-86-8358-01 8 145999668 145999668 T C ZNF34 Silent p.T222T 0.76 TCGA-86-8358-01 8 18258184 18258184 C T NAT2 Missense_Mutation p.S224F 0.09 deleterious(0) probably_damaging(1) TCGA-86-8358-01 8 2048819 2048819 C A MYOM2 Missense_Mutation p.T865K 0.41 tolerated(1) benign(0.004) TCGA-86-8358-01 8 22277095 22277095 G A SLC39A14 Missense_Mutation p.D455N 0.22 tolerated(0.06) possibly_damaging(0.772) TCGA-86-8358-01 8 23174526 23174526 G T LOXL2 Missense_Mutation p.D524E 0.37 deleterious(0.05) benign(0.034) TCGA-86-8358-01 8 23538998 23538998 C A NKX3-1 Missense_Mutation p.K147N 0.26 deleterious(0) probably_damaging(1) TCGA-86-8358-01 8 24342862 24342862 C A ADAM7 Silent p.T316T 0.44 TCGA-86-8358-01 8 24813270 24813270 G T CTD-2168K21.2 5'Flank 0.57 TCGA-86-8358-01 8 27291057 27291057 C T PTK2B Missense_Mutation p.H365Y 0.15 tolerated(0.36) benign(0.017) TCGA-86-8358-01 8 2796065 2796065 C A CSMD1 3'Flank 0.36 TCGA-86-8358-01 8 32600296 32600296 C G NRG1 Intron 0.07 TCGA-86-8358-01 8 37795163 37795163 A G GOT1L1 Silent p.S134S 0.54 TCGA-86-8358-01 8 38189015 38189015 A G WHSC1L1 Silent p.H333H 0.55 TCGA-86-8358-01 8 39785377 39785377 G T IDO1 Missense_Mutation p.M295I 0.56 deleterious(0) probably_damaging(1) TCGA-86-8358-01 8 40554902 40554902 C A ZMAT4 Missense_Mutation p.V71L 0.25 tolerated(0.18) probably_damaging(0.99) TCGA-86-8358-01 8 42162777 42162778 AG T IKBKB Frame_Shift_Del p.Q154Lfs*7 0.11 TCGA-86-8358-01 8 48845668 48845668 A T PRKDC Nonsense_Mutation p.L563* 0.56 TCGA-86-8358-01 8 49986616 49986616 A T C8orf22 Splice_Site p.X19_splice 0.60 TCGA-86-8358-01 8 52336197 52336197 T A PXDNL Missense_Mutation p.Y578F 0.69 deleterious(0.03) possibly_damaging(0.687) TCGA-86-8358-01 8 57079088 57079088 G A PLAG1 Missense_Mutation p.S406F 0.45 tolerated(0.11) benign(0.135) TCGA-86-8358-01 8 57905802 57905802 G A IMPAD1 Missense_Mutation p.R115C 0.25 tolerated(0.05) probably_damaging(0.97) TCGA-86-8358-01 8 59728124 59728124 G C TOX Missense_Mutation p.H389D 0.18 deleterious(0.02) benign(0.014) TCGA-86-8358-01 8 61654206 61654206 A G CHD7 Missense_Mutation p.Y72C 0.20 possibly_damaging(0.759) TCGA-86-8358-01 8 69058477 69058477 G T PREX2 Missense_Mutation p.R1374L 0.30 deleterious(0.01) benign(0.01) TCGA-86-8358-01 8 69058478 69058478 G T PREX2 Silent p.R1374R 0.29 TCGA-86-8358-01 8 74203860 74203860 G C RPL7 Nonsense_Mutation p.Y155* 0.37 TCGA-86-8358-01 8 77775632 77775632 G T ZFHX4 Missense_Mutation p.V3228L 0.42 benign(0.216) TCGA-86-8358-01 8 77776198 77776198 C A ZFHX4 Missense_Mutation p.D3416E 0.39 benign(0.322) TCGA-86-8358-01 8 88885068 88885068 C A DCAF4L2 Missense_Mutation p.A378S 0.25 tolerated(0.42) benign(0.027) TCGA-86-8358-01 8 88885612 88885612 C T DCAF4L2 Silent p.A196A 0.12 TCGA-86-8358-01 9 100190915 100190915 G A TDRD7 Silent p.V56V 0.26 TCGA-86-8358-01 9 101536273 101536273 C A ANKS6 Silent p.L569L 0.23 TCGA-86-8358-01 9 109692000 109692000 A T ZNF462 Missense_Mutation p.K1936I 0.56 probably_damaging(0.996) TCGA-86-8358-01 9 111681117 111681117 T A IKBKAP Silent p.A238A 0.42 TCGA-86-8358-01 9 112898735 112898735 A T PALM2-AKAP2 Missense_Mutation p.Y304F 0.44 tolerated(0.5) benign(0.444) TCGA-86-8358-01 9 115946630 115946630 C A FKBP15 Missense_Mutation p.S553I 0.19 tolerated(0.26) possibly_damaging(0.775) TCGA-86-8358-01 9 117379407 117379407 G T C9orf91 5'UTR 0.24 TCGA-86-8358-01 9 118989789 118989789 C T PAPPA Missense_Mutation p.P731S 0.22 tolerated(0.06) possibly_damaging(0.641) TCGA-86-8358-01 9 125289072 125289072 A G OR1N1 Silent p.C167C 0.43 TCGA-86-8358-01 9 127781386 127781386 C A SCAI Missense_Mutation p.E259D 0.44 tolerated(0.52) benign(0.001) TCGA-86-8358-01 9 130221303 130221303 C G LRSAM1 Missense_Mutation p.Q92E 0.29 tolerated(0.26) possibly_damaging(0.838) TCGA-86-8358-01 9 130469273 130469273 C T C9orf117 5'UTR 0.26 TCGA-86-8358-01 9 131196737 131196737 G C CERCAM Missense_Mutation p.E460D 0.23 tolerated(0.13) benign(0.012) TCGA-86-8358-01 9 131904749 131904749 A T PPP2R4 Missense_Mutation p.H271L 0.47 deleterious(0) probably_damaging(0.973) TCGA-86-8358-01 9 136650949 136650949 C A VAV2 Missense_Mutation p.C494F 0.21 tolerated(1) possibly_damaging(0.904) TCGA-86-8358-01 9 137804379 137804379 C T FCN1 Missense_Mutation p.G184E 0.48 deleterious(0.01) probably_damaging(0.992) TCGA-86-8358-01 9 138669316 138669316 C T KCNT1 Missense_Mutation p.R828C 0.52 deleterious(0) possibly_damaging(0.836) TCGA-86-8358-01 9 140080784 140080784 C A ANAPC2 Silent p.R255R 0.36 TCGA-86-8358-01 9 140392679 140392679 C A PNPLA7 Silent p.P592P 0.44 TCGA-86-8358-01 9 140846823 140846823 T A CACNA1B Missense_Mutation p.L355H 0.31 deleterious(0) possibly_damaging(0.588) TCGA-86-8358-01 9 141006903 141006903 G T CACNA1B Missense_Mutation p.V1828L 0.24 deleterious(0) possibly_damaging(0.459) TCGA-86-8358-01 9 14307214 14307214 C A NFIB Missense_Mutation p.K112N 0.10 deleterious(0) probably_damaging(0.994) TCGA-86-8358-01 9 18662029 18662029 A T ADAMTSL1 Missense_Mutation p.K348I 0.14 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 9 21206547 21206547 T A IFNA10 Nonsense_Mutation p.R184* 0.08 TCGA-86-8358-01 9 21239720 21239720 T A IFNA14 Missense_Mutation p.Q72L 0.57 deleterious(0.04) benign(0.36) TCGA-86-8358-01 9 21455785 21455785 T A MIR31HG RNA 0.70 TCGA-86-8358-01 9 34557932 34557932 C A CNTFR Missense_Mutation p.G124C 0.62 deleterious(0) probably_damaging(0.962) TCGA-86-8358-01 9 34993419 34993419 G T DNAJB5 Silent p.L177L 0.69 TCGA-86-8358-01 9 34997027 34997027 T A DNAJB5 Missense_Mutation p.L387Q 0.65 deleterious(0) probably_damaging(1) TCGA-86-8358-01 9 42368474 42368474 C T ANKRD20A2 Silent p.H20H 0.32 TCGA-86-8358-01 9 43626458 43626458 G T SPATA31A6 Silent p.P743P 0.58 TCGA-86-8358-01 9 43853528 43853528 G T CNTNAP3B Missense_Mutation p.K596N 0.28 deleterious(0) possibly_damaging(0.873) TCGA-86-8358-01 9 6014980 6014980 G A RANBP6 Missense_Mutation p.L210F 0.08 deleterious(0.01) possibly_damaging(0.897) TCGA-86-8358-01 9 74817551 74817551 A T GDA Missense_Mutation p.S93C 0.28 deleterious(0.02) benign(0.008) TCGA-86-8358-01 9 75533738 75533738 C A ALDH1A1 Missense_Mutation p.V250F 0.20 deleterious(0) possibly_damaging(0.884) TCGA-86-8358-01 9 84608041 84608041 G C SPATA31D1 Missense_Mutation p.V886L 0.27 tolerated(1) benign(0.01) TCGA-86-8358-01 9 85615105 85615105 C A RASEF Nonsense_Mutation p.E568* 0.33 TCGA-86-8358-01 9 90346058 90346058 G T CTSL 3'UTR 0.25 TCGA-86-8358-01 9 90500214 90500214 C A SPATA31E1 Missense_Mutation p.T271K 0.46 tolerated(0.99) possibly_damaging(0.61) TCGA-86-8358-01 9 95267882 95267882 A T ECM2 Missense_Mutation p.L466Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 9 95411781 95411781 G A IPPK Missense_Mutation p.T123I 0.23 tolerated(0.1) benign(0.142) TCGA-86-8358-01 9 95481865 95481865 C A BICD2 Splice_Site p.X355_splice 0.50 TCGA-86-8358-01 9 95610478 95610478 T A ZNF484 Silent p.A199A 0.46 TCGA-86-8358-01 9 96079818 96079818 C T WNK2 Missense_Mutation p.A2215V 0.45 unknown(0) TCGA-86-8358-01 X 101576981 101576981 C A NXF2 Missense_Mutation p.P453T 0.38 tolerated(0.09) benign(0.135) TCGA-86-8358-01 X 105970514 105970514 G T RNF128 Missense_Mutation p.G124V 0.62 deleterious(0) probably_damaging(1) TCGA-86-8358-01 X 108696735 108696735 T C GUCY2F Silent p.G462G 0.79 TCGA-86-8358-01 X 119211065 119211065 A T RHOXF2B Missense_Mutation p.W90R 0.91 tolerated(0.43) benign(0.067) TCGA-86-8358-01 X 119602809 119602809 C A LAMP2 Intron 0.85 TCGA-86-8358-01 X 120181630 120181630 G T GLUD2 Missense_Mutation p.G31V 1.00 tolerated_low_confidence(0.05) benign(0.002) TCGA-86-8358-01 X 123785833 123785833 G T TENM1 Missense_Mutation p.P504T 0.34 tolerated(0.74) benign(0.001) TCGA-86-8358-01 X 125299885 125299885 C T DCAF12L2 Missense_Mutation p.S8N 0.58 tolerated_low_confidence(0.19) benign(0.016) TCGA-86-8358-01 X 125686260 125686260 A G DCAF12L1 Missense_Mutation p.V111A 0.82 deleterious(0.02) probably_damaging(0.998) TCGA-86-8358-01 X 128876096 128876096 G A XPNPEP2 Missense_Mutation p.G21D 0.76 deleterious_low_confidence(0.01) benign(0.221) TCGA-86-8358-01 X 129149296 129149296 G C BCORL1 Missense_Mutation p.G850R 0.80 probably_damaging(1) TCGA-86-8358-01 X 1321356 1321356 T A CRLF2 Silent p.A133A 0.55 TCGA-86-8358-01 X 135430723 135430724 - C GPR112 Frame_Shift_Ins p.N1622Kfs*62 0.40 TCGA-86-8358-01 X 135430972 135430972 A C GPR112 Missense_Mutation p.T1703P 0.34 deleterious(0.02) benign(0.424) TCGA-86-8358-01 X 136649891 136649891 C T ZIC3 Silent p.I347I 0.15 TCGA-86-8358-01 X 138643699 138643699 G T F9 Missense_Mutation p.E285D 0.33 tolerated(0.26) benign(0.003) TCGA-86-8358-01 X 139038281 139038281 G T CXorf66 Missense_Mutation p.S287Y 0.85 deleterious(0.04) probably_damaging(0.919) TCGA-86-8358-01 X 139038282 139038282 A T CXorf66 Missense_Mutation p.S287T 0.86 deleterious(0.02) possibly_damaging(0.682) TCGA-86-8358-01 X 140271041 140271041 T A LDOC1 Missense_Mutation p.T56S 0.83 tolerated(0.12) benign(0.356) TCGA-86-8358-01 X 140785615 140785615 C A SPANXD 3'UTR 0.60 TCGA-86-8358-01 X 148037735 148037735 C T AFF2 Silent p.S720S 0.12 TCGA-86-8358-01 X 149639150 149639150 C A MAMLD1 Silent p.T410T 0.81 TCGA-86-8358-01 X 151303777 151303777 C G MAGEA10 Missense_Mutation p.D106H 0.85 deleterious(0.05) benign(0.413) TCGA-86-8358-01 X 151899821 151899821 C A MAGEA12 3'UTR 0.82 TCGA-86-8358-01 X 153069054 153069054 G C PDZD4 Silent p.A688A 0.83 TCGA-86-8358-01 X 1755360 1755360 G T ASMT Missense_Mutation p.A273S 0.60 deleterious(0.03) possibly_damaging(0.775) TCGA-86-8358-01 X 29972708 29972708 G T IL1RAPL1 Missense_Mutation p.G424V 0.83 tolerated(0.16) benign(0.192) TCGA-86-8358-01 X 30873435 30873435 T C TAB3 Missense_Mutation p.Q116R 0.70 tolerated(0.08) probably_damaging(0.966) TCGA-86-8358-01 X 3235647 3235647 G A MXRA5 Silent p.C2025C 0.50 TCGA-86-8358-01 X 3242243 3242243 C T MXRA5 Missense_Mutation p.G495S 0.70 tolerated(1) benign(0.008) TCGA-86-8358-01 X 40531144 40531144 C A MED14 Missense_Mutation p.Q1034H 0.10 deleterious(0.01) benign(0.312) TCGA-86-8358-01 X 47485755 47485755 C - CFP Frame_Shift_Del p.H369Tfs*10 0.44 TCGA-86-8358-01 X 48372702 48372702 C T PORCN Missense_Mutation p.T265M 0.79 deleterious(0) probably_damaging(0.989) TCGA-86-8358-01 X 48825920 48825920 G T KCND1 Silent p.A253A 0.74 TCGA-86-8358-01 X 48921477 48921477 G T CCDC120 Missense_Mutation p.R90L 0.70 tolerated(0.61) possibly_damaging(0.46) TCGA-86-8358-01 X 49050734 49050734 G T SYP Silent p.A104A 0.83 TCGA-86-8358-01 X 49846437 49846437 G T CLCN5 Missense_Mutation p.C289F 0.68 deleterious(0) probably_damaging(0.999) TCGA-86-8358-01 X 50659413 50659413 C T BMP15 Missense_Mutation p.R329C 0.73 deleterious(0.02) probably_damaging(0.93) TCGA-86-8358-01 X 54982641 54982641 T A PFKFB1 Nonsense_Mutation p.K195* 0.64 TCGA-86-8358-01 X 57146719 57146719 G A SPIN2B Missense_Mutation p.A115V 0.77 tolerated(0.86) benign(0.002) TCGA-86-8358-01 X 5821254 5821254 G T NLGN4X Missense_Mutation p.H489N 0.47 deleterious(0.03) probably_damaging(0.993) TCGA-86-8358-01 X 6069136 6069136 C T NLGN4X Silent p.L124L 0.69 TCGA-86-8358-01 X 64722883 64722883 G T ZC3H12B Nonsense_Mutation p.E769* 0.76 TCGA-86-8358-01 X 64955188 64955188 G T MSN Missense_Mutation p.M285I 0.67 tolerated(0.23) benign(0.149) TCGA-86-8358-01 X 65253406 65253406 G T VSIG4 Silent p.R108R 0.66 TCGA-86-8358-01 X 65413416 65413416 C A HEPH Silent p.A489A 0.85 TCGA-86-8358-01 X 70356320 70356320 C T MED12 Silent p.L1739L 0.82 TCGA-86-8358-01 X 70613232 70613232 A C TAF1 Missense_Mutation p.M1065L 0.63 tolerated(0.09) benign(0.38) TCGA-86-8358-01 X 71864287 71864287 C T PHKA1 Missense_Mutation p.V462M 0.73 deleterious(0) possibly_damaging(0.9) TCGA-86-8358-01 X 77224683 77224683 G T PGAM4 Silent p.P151P 0.71 TCGA-86-8358-01 X 7811724 7811724 C A VCX Missense_Mutation p.S96R 0.55 tolerated(0.07) unknown(0) TCGA-86-8358-01 X 84520162 84520162 G T ZNF711 Nonsense_Mutation p.G273* 0.33 TCGA-86-8358-01 X 86069728 86069728 C T DACH2 Silent p.T525T 0.76 TCGA-86-8358-01 X 90690697 90690697 G T PABPC5 Missense_Mutation p.A41S 0.89 deleterious(0.02) probably_damaging(0.982) TCGA-86-8358-01 X 91134203 91134203 C A PCDH11X Silent p.P988P 0.79 TCGA-86-8359-01 10 108377951 108377951 G C SORCS1 Missense_Mutation p.A959G 0.23 tolerated(0.11) benign(0.085) TCGA-86-8359-01 10 111967665 111967665 C A MXI1 Silent p.P33P 0.21 TCGA-86-8359-01 10 18828531 18828531 T A CACNB2 Missense_Mutation p.C621S 0.19 tolerated_low_confidence(0.45) benign(0.004) TCGA-86-8359-01 10 48428922 48428922 G T GDF10 Missense_Mutation p.Q322K 0.13 deleterious(0.01) benign(0.009) TCGA-86-8359-01 10 58118594 58118594 C - ZWINT Frame_Shift_Del p.A199Qfs*76 0.28 TCGA-86-8359-01 10 69565452 69565452 C A DNAJC12 Nonsense_Mutation p.E131* 0.32 TCGA-86-8359-01 10 96609703 96609703 T A CYP2C19 Silent p.S393S 0.15 TCGA-86-8359-01 11 45267950 45267950 C A SYT13 Missense_Mutation p.K320N 0.33 tolerated(0.13) possibly_damaging(0.633) TCGA-86-8359-01 11 4929530 4929530 G T OR51A7 Missense_Mutation p.G311W 0.46 deleterious_low_confidence(0.02) possibly_damaging(0.471) TCGA-86-8359-01 11 55111418 55111418 G T OR4A16 Missense_Mutation p.V248F 0.46 tolerated_low_confidence(1) benign(0) TCGA-86-8359-01 11 60670077 60670077 G A PRPF19 Missense_Mutation p.P147L 0.21 tolerated(0.16) benign(0.003) TCGA-86-8359-01 11 60704298 60704298 C T TMEM132A Silent p.I998I 0.07 TCGA-86-8359-01 11 6231843 6231843 G A C11orf42 Missense_Mutation p.R279Q 0.53 tolerated_low_confidence(0.14) possibly_damaging(0.496) TCGA-86-8359-01 11 69455967 69455967 G T CCND1 5'UTR 0.57 TCGA-86-8359-01 11 71804553 71804553 G A LRTOMT 5'UTR 0.17 TCGA-86-8359-01 12 107486580 107486580 A - CRY1 Splice_Site p.X53_splice 0.29 TCGA-86-8359-01 12 11546300 11546300 G T PRB2 Missense_Mutation p.P238T 0.03 tolerated_low_confidence(0.58) unknown(0) TCGA-86-8359-01 12 11546672 11546672 G T PRB2 Missense_Mutation p.P114T 0.11 tolerated(0.24) unknown(0) TCGA-86-8359-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.23 deleterious(0.02) possibly_damaging(0.773) TCGA-86-8359-01 12 29598233 29598233 G T OVCH1 Missense_Mutation p.S953R 0.44 tolerated(0.11) benign(0.007) TCGA-86-8359-01 12 34175405 34175405 C A ALG10 5'UTR 0.59 TCGA-86-8359-01 12 49318378 49318378 C T FKBP11 Silent p.L83L 0.62 TCGA-86-8359-01 12 50041554 50041554 C T FMNL3 Missense_Mutation p.E904K 0.10 deleterious(0) probably_damaging(0.98) TCGA-86-8359-01 12 57577283 57577283 C A LRP1 Missense_Mutation p.D1928E 0.26 probably_damaging(0.996) TCGA-86-8359-01 12 57865931 57865931 C A GLI1 3'UTR 0.64 TCGA-86-8359-01 12 60098626 60098626 A T SLC16A7 Missense_Mutation p.D15V 0.57 deleterious(0) probably_damaging(0.995) TCGA-86-8359-01 12 71032843 71032843 C T PTPRR 3'UTR 0.17 TCGA-86-8359-01 13 23908556 23908556 C A SACS Missense_Mutation p.L3153F 0.30 probably_damaging(0.995) TCGA-86-8359-01 14 22102281 22102281 G A OR10G2 Missense_Mutation p.R240C 0.44 tolerated(0.08) benign(0.013) TCGA-86-8359-01 14 23398432 23398432 C T PRMT5 Intron 0.16 TCGA-86-8359-01 14 23524903 23524903 C A CDH24 Missense_Mutation p.G14C 0.14 tolerated(0.19) possibly_damaging(0.898) TCGA-86-8359-01 14 68272204 68272204 G A ZFYVE26 Silent p.A383A 0.24 TCGA-86-8359-01 14 70490118 70490118 C A SMOC1 Silent p.V415V 0.21 TCGA-86-8359-01 15 24921285 24921285 G C NPAP1 Missense_Mutation p.G91R 0.23 tolerated(0.86) benign(0.364) TCGA-86-8359-01 15 25324268 25324268 G T SNORD116-13 RNA 0.32 TCGA-86-8359-01 15 28478448 28478448 C A HERC2 Missense_Mutation p.A1507S 0.15 benign(0.357) TCGA-86-8359-01 15 43360190 43360190 T A UBR1 Missense_Mutation p.H235L 0.36 tolerated(0.32) possibly_damaging(0.745) TCGA-86-8359-01 16 15809082 15809082 A T MYH11 Missense_Mutation p.L1858Q 0.34 probably_damaging(0.968) TCGA-86-8359-01 16 3614256 3614256 G A NLRC3 Silent p.L275L 0.15 TCGA-86-8359-01 17 1560029 1560029 C A PRPF8 Missense_Mutation p.E1844D 0.38 tolerated(0.07) probably_damaging(0.997) TCGA-86-8359-01 17 42988741 42988741 C A GFAP Silent p.R330R 0.21 TCGA-86-8359-01 17 58297057 58297057 T A USP32 Missense_Mutation p.Q614L 0.16 tolerated(0.5) benign(0.217) TCGA-86-8359-01 18 14763729 14763729 G T ANKRD30B Nonsense_Mutation p.E289* 0.28 TCGA-86-8359-01 18 211166 211166 G A USP14 Missense_Mutation p.S456N 0.14 tolerated(0.05) possibly_damaging(0.889) TCGA-86-8359-01 18 2688676 2688676 T G SMCHD1 Silent p.S268S 0.33 TCGA-86-8359-01 18 76754097 76754097 G C SALL3 Silent p.T702T 0.17 TCGA-86-8359-01 19 1207009 1207009 G T STK11 Nonsense_Mutation p.E33* 0.31 TCGA-86-8359-01 19 1270019 1270019 G T CIRBP Intron 0.54 TCGA-86-8359-01 19 31767552 31767552 G T TSHZ3 Silent p.T1049T 0.18 TCGA-86-8359-01 19 37368087 37368087 G A ZNF345 Missense_Mutation p.E119K 0.11 tolerated(0.34) benign(0.1) TCGA-86-8359-01 19 43414735 43414735 G A PSG6 Missense_Mutation p.L235F 0.28 deleterious(0) possibly_damaging(0.873) TCGA-86-8359-01 19 46800336 46800350 GGCGCTGGGGCTGCA - HIF3A In_Frame_Del p.A2_Q6del 0.10 TCGA-86-8359-01 19 47935673 47935673 G T SLC8A2 Silent p.R714R 0.19 TCGA-86-8359-01 19 48789046 48789046 C T ZNF114 Silent p.D55D 0.13 TCGA-86-8359-01 19 51506412 51506412 G C KLK9 Missense_Mutation p.S236R 0.05 tolerated(0.11) benign(0.033) TCGA-86-8359-01 19 53741171 53741171 T A ZNF677 Missense_Mutation p.K270M 0.12 deleterious(0.01) probably_damaging(0.973) TCGA-86-8359-01 19 55450939 55450939 G T NLRP7 Missense_Mutation p.S416R 0.23 deleterious(0) benign(0.168) TCGA-86-8359-01 19 55451528 55451528 G T NLRP7 Missense_Mutation p.P220H 0.17 deleterious(0) probably_damaging(0.984) TCGA-86-8359-01 19 55776713 55776713 G A HSPBP1 Missense_Mutation p.P313L 0.23 tolerated(0.06) benign(0.131) TCGA-86-8359-01 19 57868115 57868115 A T ZNF304 Missense_Mutation p.H293L 0.33 tolerated(0.16) benign(0.394) TCGA-86-8359-01 19 7626097 7626097 A G PNPLA6 Missense_Mutation p.E1316G 0.36 deleterious(0) benign(0.011) TCGA-86-8359-01 19 9048251 9048251 G A MUC16 Missense_Mutation p.P11127L 0.37 benign(0) TCGA-86-8359-01 19 9204165 9204165 T A OR1M1 Missense_Mutation p.L82Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-86-8359-01 1 103471662 103471662 C T COL11A1 Missense_Mutation p.D585N 0.47 unknown(0) TCGA-86-8359-01 1 115166139 115166139 T C DENND2C Missense_Mutation p.E311G 0.08 deleterious(0) probably_damaging(0.937) TCGA-86-8359-01 1 152784945 152784945 A T LCE1B Missense_Mutation p.Q8L 0.38 tolerated_low_confidence(0.05) unknown(0) TCGA-86-8359-01 1 159558026 159558026 G T APCS Missense_Mutation p.S67I 0.26 deleterious(0) probably_damaging(0.998) TCGA-86-8359-01 1 180065064 180065067 AGGT - CEP350 Splice_Site p.X2973_splice 0.26 TCGA-86-8359-01 1 190067382 190067382 G T BRINP3 Nonsense_Mutation p.Y689* 0.16 TCGA-86-8359-01 1 190234085 190234085 C T BRINP3 Silent p.T176T 0.14 TCGA-86-8359-01 1 196205148 196205148 A T KCNT2 Silent p.S1088S 0.26 TCGA-86-8359-01 1 200090010 200090011 - C NR5A2 Frame_Shift_Ins p.A436Rfs*9 0.09 TCGA-86-8359-01 1 204921172 204921172 C A NFASC Missense_Mutation p.A48E 0.28 deleterious(0.03) benign(0.392) TCGA-86-8359-01 1 205499786 205499786 A G CDK18 Missense_Mutation p.Q478R 0.06 tolerated(0.18) benign(0.002) TCGA-86-8359-01 1 216420259 216420259 C A USH2A Missense_Mutation p.C826F 0.13 probably_damaging(1) TCGA-86-8359-01 1 217604609 217604609 C T GPATCH2 Missense_Mutation p.D489N 0.05 deleterious(0) benign(0.054) TCGA-86-8359-01 1 228468088 228468088 G T OBSCN Silent p.A3053A 0.24 TCGA-86-8359-01 1 229730303 229730303 T G TAF5L Missense_Mutation p.K504T 0.08 tolerated(0.21) probably_damaging(0.914) TCGA-86-8359-01 1 243507521 243507521 G T SDCCAG8 Missense_Mutation p.C454F 0.27 deleterious(0.02) benign(0.152) TCGA-86-8359-01 1 245250578 245250578 A G EFCAB2 Silent p.E135E 0.06 TCGA-86-8359-01 1 24668606 24668606 T A GRHL3 Missense_Mutation p.V350E 0.29 deleterious(0) probably_damaging(0.966) TCGA-86-8359-01 1 247978419 247978419 C A OR14A16 Missense_Mutation p.D205Y 0.11 tolerated(1) benign(0.178) TCGA-86-8359-01 1 248224700 248224700 C A OR2L3 Silent p.T239T 0.10 TCGA-86-8359-01 1 248403038 248403038 C A OR2M4 Missense_Mutation p.Q270K 0.10 tolerated(0.35) benign(0.098) TCGA-86-8359-01 1 34118028 34118028 C A CSMD2 Missense_Mutation p.G1454V 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-86-8359-01 1 35370048 35370048 G T DLGAP3 Missense_Mutation p.L313I 0.29 tolerated(0.18) probably_damaging(0.967) TCGA-86-8359-01 1 36565756 36565756 C A COL8A2 Missense_Mutation p.G30C 0.21 deleterious_low_confidence(0) unknown(0) TCGA-86-8359-01 1 3662326 3662326 G A TP73-AS1 RNA 0.49 TCGA-86-8359-01 1 40041491 40041491 C A PABPC4 Missense_Mutation p.D45Y 0.33 deleterious(0) probably_damaging(0.991) TCGA-86-8359-01 1 47685462 47685462 G T TAL1 Missense_Mutation p.A309E 0.23 tolerated(0.39) benign(0.006) TCGA-86-8359-01 1 52940508 52940508 C - ZCCHC11 Frame_Shift_Del p.G908Afs*6 0.09 TCGA-86-8359-01 1 53287388 53287388 G A ZYG11B 3'UTR 0.25 TCGA-86-8359-01 1 82431848 82431848 C G LPHN2 Silent p.V691V 0.30 TCGA-86-8359-01 20 10023772 10023772 G A ANKEF1 Missense_Mutation p.V117I 0.19 tolerated(0.66) benign(0.002) TCGA-86-8359-01 20 42169596 42169596 A T L3MBTL1 Missense_Mutation p.H784L 0.14 deleterious_low_confidence(0.01) benign(0) TCGA-86-8359-01 20 44691222 44691222 C T NCOA5 Missense_Mutation p.S486N 0.23 tolerated(0.5) benign(0.013) TCGA-86-8359-01 20 55745938 55745938 C T BMP7 3'UTR 0.15 TCGA-86-8359-01 21 41725617 41725617 T A DSCAM Missense_Mutation p.M237L 0.19 tolerated(0.75) benign(0.006) TCGA-86-8359-01 21 45679420 45679420 C T DNMT3L Missense_Mutation p.D82N 0.06 deleterious(0.01) benign(0.072) TCGA-86-8359-01 21 46945843 46945843 T A SLC19A1 Missense_Mutation p.E394V 0.25 deleterious(0) probably_damaging(0.996) TCGA-86-8359-01 2 122154724 122154724 C G CLASP1 Missense_Mutation p.V1039L 0.14 tolerated(0.21) benign(0.088) TCGA-86-8359-01 2 130948301 130948301 G A MZT2B 3'Flank 0.27 TCGA-86-8359-01 2 133541210 133541210 T C NCKAP5 Silent p.Q1058Q 0.49 TCGA-86-8359-01 2 141215095 141215095 G T LRP1B Missense_Mutation p.L3251M 0.13 possibly_damaging(0.665) TCGA-86-8359-01 2 160898556 160898556 C A PLA2R1 Missense_Mutation p.W216L 0.14 deleterious(0) probably_damaging(1) TCGA-86-8359-01 2 213878652 213878653 - GA IKZF2 Frame_Shift_Ins p.P240Lfs*28 0.29 TCGA-86-8359-01 2 234638492 234638492 G C UGT1A3 Missense_Mutation p.Q240H 0.41 tolerated(0.14) benign(0.137) TCGA-86-8359-01 2 234652326 234652326 G A UGT1A10 Intron 0.13 TCGA-86-8359-01 2 31010202 31010202 A T CAPN13 5'UTR 0.50 TCGA-86-8359-01 2 31167808 31167808 C A GALNT14 Missense_Mutation p.G253V 0.49 deleterious(0) probably_damaging(1) TCGA-86-8359-01 2 54876169 54876169 G A SPTBN1 Missense_Mutation p.G1682S 0.43 tolerated(0.3) benign(0.061) TCGA-86-8359-01 3 108773602 108773602 C A MORC1 Missense_Mutation p.V435F 0.36 deleterious(0) possibly_damaging(0.873) TCGA-86-8359-01 3 120320252 120320252 T C NDUFB4 Intron 0.19 TCGA-86-8359-01 3 151155474 151155474 A T IGSF10 Missense_Mutation p.V2292D 0.20 deleterious(0) probably_damaging(0.999) TCGA-86-8359-01 3 15115625 15115625 T A ZFYVE20 Silent p.A673A 0.12 TCGA-86-8359-01 3 164905921 164905921 C A SLITRK3 Missense_Mutation p.V900L 0.39 deleterious_low_confidence(0.01) probably_damaging(0.952) TCGA-86-8359-01 3 194165453 194165453 C A ATP13A3 Splice_Site p.X520_splice 0.26 TCGA-86-8359-01 3 42572424 42572424 G T VIPR1 Missense_Mutation p.G264W 0.14 deleterious(0) probably_damaging(1) TCGA-86-8359-01 3 46944040 46944040 G T PTH1R Silent p.V412V 0.23 TCGA-86-8359-01 3 48629410 48629410 C A COL7A1 Silent p.L426L 0.17 TCGA-86-8359-01 3 56653839 56653839 C G CCDC66 Missense_Mutation p.D890E 0.18 deleterious(0.01) benign(0.05) TCGA-86-8359-01 3 97868314 97868314 C A OR5H14 Missense_Mutation p.L29M 0.34 deleterious(0.02) benign(0.234) TCGA-86-8359-01 3 99881242 99881243 - T CMSS1 Frame_Shift_Ins p.L108Ffs*4 0.28 TCGA-86-8359-01 4 102783751 102783751 A C BANK1 Silent p.T231T 0.40 TCGA-86-8359-01 4 114163317 114163317 G T ANK2 Missense_Mutation p.M281I 0.09 probably_damaging(0.997) TCGA-86-8359-01 4 115997975 115997975 G T NDST4 Missense_Mutation p.T73K 0.14 tolerated(0.88) benign(0.042) TCGA-86-8359-01 4 1231989 1231989 C A CTBP1 Silent p.T59T 0.14 TCGA-86-8359-01 4 155459138 155459138 C A PLRG1 Missense_Mutation p.G425V 0.08 deleterious(0) probably_damaging(0.938) TCGA-86-8359-01 4 160252979 160252979 G T RAPGEF2 Silent p.G430G 0.36 TCGA-86-8359-01 4 3494877 3494877 C T DOK7 Silent p.C388C 0.36 TCGA-86-8359-01 4 56823520 56823520 G T CEP135 Missense_Mutation p.A202S 0.18 deleterious(0) possibly_damaging(0.882) TCGA-86-8359-01 4 66201803 66201803 G C EPHA5 Missense_Mutation p.P900R 0.38 deleterious(0.01) probably_damaging(1) TCGA-86-8359-01 4 69095207 69095207 G C TMPRSS11B Silent p.V238V 0.16 TCGA-86-8359-01 4 71201633 71201633 G T CABS1 Nonsense_Mutation p.E293* 0.21 TCGA-86-8359-01 4 71510249 71510249 C A ENAM Missense_Mutation p.Q1036K 0.37 deleterious(0.04) benign(0.003) TCGA-86-8359-01 4 7691293 7691293 C T SORCS2 Silent p.A523A 0.27 TCGA-86-8359-01 4 84191124 84191124 C A COQ2 Silent p.A267A 0.19 TCGA-86-8359-01 4 86643125 86643125 G A ARHGAP24 Missense_Mutation p.G90R 0.17 deleterious(0) possibly_damaging(0.782) TCGA-86-8359-01 5 127704902 127704902 A T FBN2 Missense_Mutation p.C741S 0.20 deleterious(0) probably_damaging(0.967) TCGA-86-8359-01 5 129039947 129039947 G T ADAMTS19 Missense_Mutation p.G1053C 0.25 deleterious(0) probably_damaging(1) TCGA-86-8359-01 5 132051569 132051569 G T KIF3A Silent p.R337R 0.30 TCGA-86-8359-01 5 14481384 14481384 A G TRIO Silent p.S2126S 0.17 TCGA-86-8359-01 5 148406461 148406461 A T SH3TC2 Missense_Mutation p.M945K 0.17 deleterious(0.01) benign(0.13) TCGA-86-8359-01 5 161324375 161324375 G T GABRA1 Missense_Mutation p.A440S 0.20 tolerated(0.17) probably_damaging(0.968) TCGA-86-8359-01 5 16465785 16465785 G C ZNF622 5'UTR 0.54 TCGA-86-8359-01 5 169141194 169141194 T C DOCK2 Missense_Mutation p.S608P 0.21 deleterious(0) probably_damaging(0.98) TCGA-86-8359-01 5 175995990 175995990 C T CDHR2 Silent p.S98S 0.16 TCGA-86-8359-01 5 19591255 19591255 T A CDH18 Missense_Mutation p.T304S 0.37 tolerated(0.55) benign(0.075) TCGA-86-8359-01 5 32774938 32774938 G T NPR3 Missense_Mutation p.R395I 0.39 deleterious(0) probably_damaging(1) TCGA-86-8359-01 5 32784903 32784903 A T NPR3 Silent p.S476S 0.12 TCGA-86-8359-01 5 45695938 45695938 C A HCN1 Silent p.G86G 0.29 TCGA-86-8359-01 5 83433159 83433159 G A EDIL3 Silent p.C123C 0.14 TCGA-86-8359-01 5 83433160 83433160 C A EDIL3 Missense_Mutation p.C123F 0.13 tolerated(0.07) probably_damaging(0.922) TCGA-86-8359-01 6 109954298 109954298 C A AK9 Missense_Mutation p.G361V 0.23 deleterious(0) probably_damaging(0.994) TCGA-86-8359-01 6 155761216 155761216 G A NOX3 Missense_Mutation p.S181F 0.16 deleterious(0) possibly_damaging(0.887) TCGA-86-8359-01 6 165715646 165715646 G A C6orf118 Silent p.D55D 0.21 TCGA-86-8359-01 6 27425103 27425103 C A ZNF184 Missense_Mutation p.R54M 0.42 deleterious(0) probably_damaging(0.999) TCGA-86-8359-01 6 31916606 31916606 G C CFB Splice_Site p.X848_splice 0.21 TCGA-86-8359-01 6 52697743 52697743 T A GSTA5 Missense_Mutation p.S154C 0.13 deleterious(0.01) probably_damaging(0.973) TCGA-86-8359-01 6 55113494 55113494 T C HCRTR2 Missense_Mutation p.V94A 0.26 deleterious(0) probably_damaging(0.997) TCGA-86-8359-01 7 102580021 102580021 T G LRRC17 Missense_Mutation p.F306C 0.15 tolerated(0.23) benign(0.062) TCGA-86-8359-01 7 107848037 107848037 A G NRCAM Missense_Mutation p.I381T 0.07 tolerated(0.48) benign(0.002) TCGA-86-8359-01 7 120906325 120906325 T C CPED1 Silent p.Y785Y 0.19 TCGA-86-8359-01 7 127342520 127342520 G - SND1 Frame_Shift_Del p.V208Sfs*82 0.20 TCGA-86-8359-01 7 129915048 129915048 G T CPA2 Missense_Mutation p.E182D 0.15 deleterious(0) probably_damaging(0.981) TCGA-86-8359-01 7 142568144 142568144 G C EPHB6 Missense_Mutation p.G929R 0.17 tolerated(0.1) benign(0.375) TCGA-86-8359-01 7 143048721 143048721 G T CLCN1 Missense_Mutation p.G877V 0.28 deleterious(0) probably_damaging(1) TCGA-86-8359-01 7 150269446 150269446 T A GIMAP4 Missense_Mutation p.N96K 0.36 tolerated(0.11) benign(0.009) TCGA-86-8359-01 7 19184573 19184573 G T FERD3L Missense_Mutation p.S138Y 0.11 deleterious(0) probably_damaging(1) TCGA-86-8359-01 7 21847634 21847634 G T DNAH11 Silent p.V3440V 0.47 TCGA-86-8359-01 7 43540318 43540318 G A HECW1 Missense_Mutation p.R1153Q 0.13 deleterious(0.01) possibly_damaging(0.734) TCGA-86-8359-01 7 70597938 70597938 C A WBSCR17 Missense_Mutation p.N50K 0.15 tolerated_low_confidence(0.98) probably_damaging(0.968) TCGA-86-8359-01 7 72193901 72193901 T A TYW1B Splice_Site 0.12 TCGA-86-8359-01 7 91503720 91503720 G A MTERF Nonsense_Mutation p.R130* 0.50 TCGA-86-8359-01 7 95499293 95499293 C A DYNC1I1 Missense_Mutation p.A175D 0.14 tolerated(0.59) benign(0.001) TCGA-86-8359-01 7 98490104 98490104 C T TRRAP Missense_Mutation p.R107C 0.19 possibly_damaging(0.689) TCGA-86-8359-01 8 109462682 109462682 G T EMC2 Missense_Mutation p.M60I 0.50 tolerated(0.93) benign(0.001) TCGA-86-8359-01 8 133141656 133141656 C A KCNQ3 Silent p.S824S 0.48 TCGA-86-8359-01 8 139151269 139151269 A C FAM135B Missense_Mutation p.D1287E 0.41 deleterious(0) probably_damaging(0.993) TCGA-86-8359-01 8 139164901 139164901 G A FAM135B Missense_Mutation p.S606F 0.47 deleterious(0.03) benign(0.033) TCGA-86-8359-01 8 139165439 139165439 G A FAM135B Missense_Mutation p.P427S 0.43 tolerated(0.12) benign(0.04) TCGA-86-8359-01 8 139165449 139165449 C T FAM135B Silent p.L423L 0.31 TCGA-86-8359-01 8 20036006 20036006 T A SLC18A1 Splice_Site p.X163_splice 0.24 TCGA-86-8359-01 8 36776396 36776396 C T KCNU1 Silent p.V859V 0.44 TCGA-86-8359-01 8 51449356 51449356 C A SNTG1 Missense_Mutation p.T223K 0.16 deleterious(0.02) benign(0.037) TCGA-86-8359-01 8 52284553 52284553 C T PXDNL Missense_Mutation p.G1261S 0.53 tolerated(0.34) benign(0.264) TCGA-86-8359-01 8 72754787 72754787 G T MSC 3'UTR 0.12 TCGA-86-8359-01 8 75276644 75276644 G T GDAP1 3'UTR 0.11 TCGA-86-8359-01 9 126144811 126144811 C A DENND1A Missense_Mutation p.D644Y 0.29 deleterious(0) probably_damaging(0.984) TCGA-86-8359-01 9 130712919 130712919 G T FAM102A Intron 0.36 TCGA-86-8359-01 9 137726876 137726876 G T COL5A1 Silent p.R1732R 0.10 TCGA-86-8359-01 9 138454243 138454243 C A PAEP Missense_Mutation p.T67N 0.20 deleterious(0) probably_damaging(0.999) TCGA-86-8359-01 9 22447346 22447346 G A DMRTA1 Silent p.T94T 0.33 TCGA-86-8359-01 9 22447347 22447347 C A DMRTA1 Missense_Mutation p.P95T 0.33 deleterious(0) probably_damaging(1) TCGA-86-8359-01 9 34251520 34251520 G A UBAP1 Missense_Mutation p.G564E 0.16 deleterious(0.03) benign(0.057) TCGA-86-8359-01 9 5549474 5549474 C A PDCD1LG2 Silent p.S167S 0.23 TCGA-86-8359-01 9 5968617 5968618 CT - KIAA2026 Frame_Shift_Del p.E538Afs*4 0.13 TCGA-86-8359-01 9 6499927 6499927 A G UHRF2 Silent p.S667S 0.09 TCGA-86-8359-01 9 79326177 79326177 G T PRUNE2 Missense_Mutation p.P338H 0.25 deleterious(0) probably_damaging(0.995) TCGA-86-8359-01 9 79635356 79635356 C T FOXB2 Silent p.S262S 0.16 TCGA-86-8359-01 9 94486849 94486849 C G ROR2 Missense_Mutation p.A643P 0.13 deleterious(0.01) probably_damaging(0.99) TCGA-86-8359-01 X 111698803 111698803 T C ZCCHC16 Missense_Mutation p.C283R 0.68 deleterious(0) probably_damaging(0.999) TCGA-86-8359-01 X 12701695 12701695 G A FRMPD4 Missense_Mutation p.G188S 0.25 deleterious(0.01) probably_damaging(1) TCGA-86-8359-01 X 134993945 134993945 C G SAGE1 Missense_Mutation p.A785G 0.28 tolerated(0.18) benign(0.156) TCGA-86-8359-01 X 140271177 140271177 G T LDOC1 Missense_Mutation p.H10Q 0.57 tolerated(0.63) benign(0.001) TCGA-86-8359-01 X 48776079 48776079 C A PIM2 Silent p.A11A 0.45 TCGA-86-8359-01 X 77112343 77112343 C T MAGT1 Missense_Mutation p.A219T 0.29 tolerated(0.23) benign(0.041) TCGA-86-8359-01 X 78217060 78217060 C A P2RY10 3'UTR 0.61 TCGA-86-8359-01 X 86773270 86773270 A G KLHL4 Missense_Mutation p.Q125R 0.63 tolerated_low_confidence(0.18) benign(0.004) TCGA-86-8359-01 Y 24327063 24327063 T G RBMY1F Missense_Mutation p.E18D 0.13 tolerated(0.06) possibly_damaging(0.51) TCGA-86-8585-01 10 104569675 104569675 C A WBP1L Silent p.I73I 0.13 TCGA-86-8585-01 10 104865495 104865495 C G NT5C2 Missense_Mutation p.L119F 0.08 deleterious(0.02) probably_damaging(0.972) TCGA-86-8585-01 10 107022218 107022218 G T SORCS3 Silent p.L1191L 0.08 TCGA-86-8585-01 10 108339231 108339231 G T SORCS1 Silent p.A1089A 0.10 TCGA-86-8585-01 10 108339232 108339232 G T SORCS1 Missense_Mutation p.A1089D 0.10 deleterious(0.02) probably_damaging(0.994) TCGA-86-8585-01 10 118236684 118236684 T A PNLIPRP3 3'UTR 0.11 TCGA-86-8585-01 10 119303052 119303053 - T EMX2 Frame_Shift_Ins p.H92Lfs*49 0.27 TCGA-86-8585-01 10 120931985 120931985 C G PRDX3 Missense_Mutation p.G154R 0.22 deleterious(0) probably_damaging(0.999) TCGA-86-8585-01 10 124377625 124377625 G T DMBT1 Missense_Mutation p.V1533L 0.14 deleterious(0.02) probably_damaging(0.996) TCGA-86-8585-01 10 126370845 126370845 C A FAM53B Missense_Mutation p.W79C 0.23 deleterious(0) probably_damaging(0.997) TCGA-86-8585-01 10 127708333 127708333 G T ADAM12 Missense_Mutation p.T867N 0.22 tolerated(0.15) benign(0.081) TCGA-86-8585-01 10 128191249 128191249 A G C10orf90 Intron 0.24 TCGA-86-8585-01 10 134659602 134659602 G T TTC40 Missense_Mutation p.L2133M 0.52 deleterious(0.01) probably_damaging(0.999) TCGA-86-8585-01 10 134659644 134659644 G T TTC40 Missense_Mutation p.L2119I 0.42 tolerated(0.08) probably_damaging(0.994) TCGA-86-8585-01 10 135212019 135212019 G T MTG1 Missense_Mutation p.Q121H 0.12 tolerated(0.11) benign(0.021) TCGA-86-8585-01 10 15649826 15649826 C G ITGA8 Missense_Mutation p.L538F 0.08 tolerated(1) probably_damaging(0.928) TCGA-86-8585-01 10 16526697 16526697 G T PTER Missense_Mutation p.R105L 0.12 deleterious(0) probably_damaging(0.992) TCGA-86-8585-01 10 18250644 18250644 G T SLC39A12 Missense_Mutation p.K132N 0.06 tolerated(0.33) possibly_damaging(0.694) TCGA-86-8585-01 10 21117556 21117556 T C NEBL Missense_Mutation p.Y560C 0.22 deleterious(0) probably_damaging(0.925) TCGA-86-8585-01 10 26446249 26446249 T C MYO3A Missense_Mutation p.M935T 0.21 deleterious(0) benign(0.04) TCGA-86-8585-01 10 27434549 27434549 A C YME1L1 Intron 0.18 TCGA-86-8585-01 10 27507072 27507072 C A ACBD5 Missense_Mutation p.L222F 0.23 tolerated(0.2) benign(0.106) TCGA-86-8585-01 10 28032203 28032203 C A MKX Missense_Mutation p.G48C 0.17 deleterious_low_confidence(0.02) benign(0.011) TCGA-86-8585-01 10 31810643 31810643 C G ZEB1 Missense_Mutation p.P795A 0.09 deleterious(0.05) possibly_damaging(0.665) TCGA-86-8585-01 10 31815804 31815804 C T ZEB1 Missense_Mutation p.T997I 0.09 tolerated(0.18) benign(0.055) TCGA-86-8585-01 10 33212596 33212596 C T ITGB1 Missense_Mutation p.D287N 0.21 deleterious(0) probably_damaging(0.951) TCGA-86-8585-01 10 37508532 37508532 G A ANKRD30A Missense_Mutation p.A1242T 0.12 tolerated(0.06) benign(0.048) TCGA-86-8585-01 10 43701483 43701483 C T RASGEF1A Missense_Mutation p.G28R 0.38 tolerated(0.39) benign(0.164) TCGA-86-8585-01 10 44112586 44112586 G C ZNF485 Missense_Mutation p.K365N 0.12 tolerated(0.24) benign(0.316) TCGA-86-8585-01 10 46967689 46967689 C T SYT15 Missense_Mutation p.E130K 0.08 deleterious(0.02) benign(0.18) TCGA-86-8585-01 10 50531633 50531633 C A C10orf71 Missense_Mutation p.P348H 0.11 deleterious(0.03) probably_damaging(0.957) TCGA-86-8585-01 10 50819651 50819651 C A SLC18A3 Missense_Mutation p.P289T 0.09 deleterious(0.02) probably_damaging(0.951) TCGA-86-8585-01 10 55581740 55581740 G T PCDH15 Missense_Mutation p.Q1918K 0.13 tolerated_low_confidence(0.21) unknown(0) TCGA-86-8585-01 10 5766444 5766444 G A FAM208B Missense_Mutation p.R100K 0.08 tolerated(1) benign(0.007) TCGA-86-8585-01 10 6268191 6268191 A T PFKFB3 Missense_Mutation p.N460Y 0.31 possibly_damaging(0.492) TCGA-86-8585-01 10 70645962 70645962 G - STOX1 Frame_Shift_Del p.L805Cfs*20 0.17 TCGA-86-8585-01 10 72358094 72358094 C G PRF1 Missense_Mutation p.W461C 0.16 deleterious(0) probably_damaging(1) TCGA-86-8585-01 10 74666352 74666352 A T OIT3 Splice_Site p.X182_splice 0.13 TCGA-86-8585-01 10 82267105 82267105 G C TSPAN14 Missense_Mutation p.R85P 0.07 deleterious(0) probably_damaging(1) TCGA-86-8585-01 10 95721065 95721065 G A PIPSL RNA 0.13 TCGA-86-8585-01 10 98095725 98095725 G T DNTT Missense_Mutation p.K479N 0.17 tolerated(0.11) possibly_damaging(0.883) TCGA-86-8585-01 10 98742027 98742027 A C C10orf12 Missense_Mutation p.S294R 0.11 tolerated(0.2) benign(0.089) TCGA-86-8585-01 10 98766275 98766275 G A SLIT1 Silent p.L1182L 0.08 TCGA-86-8585-01 11 102992205 102992205 G A DYNC2H1 Missense_Mutation p.V489I 0.07 benign(0.003) TCGA-86-8585-01 11 107673821 107673821 A T SLC35F2 Missense_Mutation p.V282E 0.08 deleterious(0) probably_damaging(0.995) TCGA-86-8585-01 11 111915889 111915889 G C DLAT Missense_Mutation p.G409R 0.06 tolerated(0.25) benign(0.036) TCGA-86-8585-01 11 118425244 118425244 G C IFT46 Missense_Mutation p.S189C 0.13 tolerated(0.32) benign(0.009) TCGA-86-8585-01 11 124120903 124120903 G T OR8G1 Missense_Mutation p.G161C 0.29 deleterious_low_confidence(0.03) possibly_damaging(0.719) TCGA-86-8585-01 11 124135109 124135109 C - OR8G5 Frame_Shift_Del p.P130Lfs*4 0.21 TCGA-86-8585-01 11 124267144 124267144 T C OR8B3 Missense_Mutation p.Y35C 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.855) TCGA-86-8585-01 11 124413497 124413497 G T OR8B12 Missense_Mutation p.H18Q 0.10 tolerated_low_confidence(0.13) benign(0.017) TCGA-86-8585-01 11 1264845 1264857 CCAGCACTCGACT - MUC5B Frame_Shift_Del p.H2247Pfs*56 0.16 TCGA-86-8585-01 11 1272654 1272654 C T MUC5B Silent p.L4848L 0.05 TCGA-86-8585-01 11 130060539 130060539 G T ST14 Silent p.L275L 0.41 TCGA-86-8585-01 11 22384373 22384373 T C SLC17A6 Splice_Site p.X250_splice 0.32 TCGA-86-8585-01 11 2339218 2339218 C A TSPAN32 3'UTR 0.23 TCGA-86-8585-01 11 26743132 26743132 C A SLC5A12 Missense_Mutation p.G44W 0.22 deleterious(0) probably_damaging(1) TCGA-86-8585-01 11 27528442 27528442 C G LIN7C 5'Flank 0.31 TCGA-86-8585-01 11 36614057 36614057 A G RAG2 3'UTR 0.38 TCGA-86-8585-01 11 47356684 47356684 G T MYBPC3 Silent p.A938A 0.15 TCGA-86-8585-01 11 55419072 55419072 G C OR4S2 Missense_Mutation p.R231S 0.04 deleterious(0) possibly_damaging(0.745) TCGA-86-8585-01 11 55579073 55579073 G T OR5L1 Missense_Mutation p.G44V 0.05 deleterious(0) probably_damaging(0.967) TCGA-86-8585-01 11 56511196 56511196 C A OR9G4 Missense_Mutation p.G31V 0.14 deleterious(0) possibly_damaging(0.873) TCGA-86-8585-01 11 57569386 57569386 G T CTNND1 Missense_Mutation p.D380Y 0.29 deleterious(0) probably_damaging(1) TCGA-86-8585-01 11 57958040 57958040 T C OR9Q2 Silent p.P26P 0.15 TCGA-86-8585-01 11 59132157 59132157 A T OR5AN1 Missense_Mutation p.S76C 0.15 deleterious(0) possibly_damaging(0.841) TCGA-86-8585-01 11 59132553 59132553 G T OR5AN1 Missense_Mutation p.G208W 0.24 deleterious(0) probably_damaging(0.998) TCGA-86-8585-01 11 59631533 59631533 G - TCN1 Frame_Shift_Del p.L36* 0.17 TCGA-86-8585-01 11 5969350 5969350 C G OR56A3 Missense_Mutation p.I258M 0.27 deleterious(0.03) probably_damaging(0.948) TCGA-86-8585-01 11 60786732 60786732 C A CD6 Missense_Mutation p.P650H 0.27 tolerated(0.2) benign(0.014) TCGA-86-8585-01 11 63137793 63137793 C T SLC22A9 Missense_Mutation p.R89C 0.21 deleterious(0.02) benign(0.082) TCGA-86-8585-01 11 65480896 65480896 G C KAT5 Missense_Mutation p.E154D 0.17 tolerated(0.41) benign(0.009) TCGA-86-8585-01 11 6622513 6622513 C A RRP8 Silent p.G261G 0.28 TCGA-86-8585-01 11 6622514 6622514 C A RRP8 Missense_Mutation p.G261V 0.28 tolerated(0.29) benign(0.017) TCGA-86-8585-01 11 6662004 6662004 C G DCHS1 Missense_Mutation p.D281H 0.30 deleterious(0) probably_damaging(1) TCGA-86-8585-01 11 67269421 67269421 C A PITPNM1 Silent p.G184G 0.25 TCGA-86-8585-01 11 67833278 67833278 C G CHKA Missense_Mutation p.R367P 0.12 tolerated(0.26) benign(0.009) TCGA-86-8585-01 11 69063315 69063315 C A MYEOV Missense_Mutation p.A133D 0.15 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-86-8585-01 11 76891513 76891513 G C MYO7A Missense_Mutation p.E894Q 0.11 tolerated(0.14) possibly_damaging(0.459) TCGA-86-8585-01 11 8008911 8008911 G T EIF3F Silent p.P4P 0.30 TCGA-86-8585-01 11 83673977 83673977 T C DLG2 Missense_Mutation p.R431G 0.26 tolerated(0.6) benign(0.228) TCGA-86-8585-01 11 84028072 84028072 C A DLG2 Intron 0.24 TCGA-86-8585-01 11 86662526 86662526 C G FZD4 Silent p.G424G 0.11 TCGA-86-8585-01 11 89135651 89135651 T A NOX4 Missense_Mutation p.N230I 0.29 deleterious(0.01) possibly_damaging(0.862) TCGA-86-8585-01 11 93212416 93212416 C G SMCO4 5'UTR 0.21 TCGA-86-8585-01 11 94759439 94759439 C T KDM4E Missense_Mutation p.R240W 0.23 deleterious(0.01) benign(0.293) TCGA-86-8585-01 12 101880255 101880255 C A SPIC Silent p.A151A 0.31 TCGA-86-8585-01 12 112184978 112184978 G A ACAD10 Missense_Mutation p.M825I 0.18 deleterious(0.01) benign(0.138) TCGA-86-8585-01 12 113822725 113822725 G T PLBD2 Silent p.R396R 0.09 TCGA-86-8585-01 12 118198878 118198878 C A KSR2 Silent p.L308L 0.12 TCGA-86-8585-01 12 121746477 121746477 C A ANAPC5 Nonsense_Mutation p.E692* 0.25 TCGA-86-8585-01 12 12315154 12315154 C T LRP6 Missense_Mutation p.R751K 0.11 tolerated(0.14) probably_damaging(1) TCGA-86-8585-01 12 12332775 12332775 T C LRP6 Missense_Mutation p.Y505C 0.25 deleterious(0) probably_damaging(1) TCGA-86-8585-01 12 123340888 123340888 A T HIP1R Missense_Mutation p.R466S 0.22 deleterious(0) probably_damaging(0.96) TCGA-86-8585-01 12 129566508 129566508 C T TMEM132D Silent p.Q573Q 0.17 TCGA-86-8585-01 12 133196859 133196859 T G P2RX2 Missense_Mutation p.F187L 0.07 tolerated(0.65) benign(0.32) TCGA-86-8585-01 12 1995517 1995517 G T CACNA2D4 Missense_Mutation p.P289T 0.13 deleterious(0) probably_damaging(0.979) TCGA-86-8585-01 12 20523043 20523043 G A PDE3A Silent p.L275L 0.17 TCGA-86-8585-01 12 21795056 21795056 T C LDHB Missense_Mutation p.D142G 0.39 deleterious(0.04) benign(0.222) TCGA-86-8585-01 12 21926447 21926447 C G KCNJ8 Missense_Mutation p.R35P 0.28 deleterious(0) probably_damaging(0.989) TCGA-86-8585-01 12 27542855 27542855 A T ARNTL2 Intron 0.50 TCGA-86-8585-01 12 308033 308033 G A SLC6A12 Missense_Mutation p.T259I 0.24 deleterious(0) possibly_damaging(0.828) TCGA-86-8585-01 12 41831587 41831587 C G PDZRN4 Intron 0.11 TCGA-86-8585-01 12 4460459 4460459 G T C12orf5 Silent p.A99A 0.13 TCGA-86-8585-01 12 50392979 50392979 A T RACGAP1 Missense_Mutation p.V275E 0.29 tolerated(1) benign(0.013) TCGA-86-8585-01 12 52639236 52639236 G T KRT7 Missense_Mutation p.R342L 0.35 deleterious(0) benign(0.232) TCGA-86-8585-01 12 52711701 52711702 AG - KRT83 Frame_Shift_Del p.L216Kfs*26 0.30 TCGA-86-8585-01 12 52822221 52822221 G T KRT75 Silent p.R401R 0.33 TCGA-86-8585-01 12 57881753 57881753 G T MARS 5'UTR 0.41 TCGA-86-8585-01 12 6710494 6710494 C A CHD4 Nonsense_Mutation p.E254* 0.28 TCGA-86-8585-01 12 8329638 8329638 C T ZNF705A Missense_Mutation p.S121L 0.22 tolerated(1) benign(0) TCGA-86-8585-01 12 9001368 9001368 A T A2ML1 Missense_Mutation p.E629V 0.29 deleterious(0) possibly_damaging(0.707) TCGA-86-8585-01 12 91366627 91366627 C A EPYC Missense_Mutation p.K157N 0.18 tolerated(0.06) benign(0.42) TCGA-86-8585-01 12 93100824 93100824 T A C12orf74 Silent p.P139P 0.11 TCGA-86-8585-01 12 96429315 96429315 C A LTA4H 5'UTR 0.27 TCGA-86-8585-01 13 108862410 108862410 C A LIG4 Missense_Mutation p.V403L 0.27 deleterious(0.02) benign(0.052) TCGA-86-8585-01 13 111213967 111213967 G A RAB20 5'UTR 0.53 TCGA-86-8585-01 13 19748163 19748163 A C TUBA3C Missense_Mutation p.M398R 0.29 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-86-8585-01 13 28014556 28014556 T C MTIF3 Silent p.T10T 0.23 TCGA-86-8585-01 13 36700142 36700142 G A DCLK1 Missense_Mutation p.R45C 0.18 deleterious(0) unknown(0) TCGA-86-8585-01 13 37453478 37453478 A C SMAD9 Missense_Mutation p.F117V 0.06 deleterious(0) probably_damaging(0.967) TCGA-86-8585-01 13 49281234 49281234 G T CYSLTR2 Missense_Mutation p.R94M 0.23 deleterious(0) probably_damaging(1) TCGA-86-8585-01 13 52684531 52684532 TG C NEK5 Frame_Shift_Del p.S137Rfs*14 0.22 TCGA-86-8585-01 13 53418894 53418894 T A PCDH8 Missense_Mutation p.Q1005L 0.31 deleterious(0.01) probably_damaging(0.915) TCGA-86-8585-01 13 58207964 58207964 C T PCDH17 Silent p.R428R 0.41 TCGA-86-8585-01 13 75923324 75923324 G T TBC1D4 Missense_Mutation p.L464I 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-86-8585-01 13 78184241 78184241 G T SCEL Missense_Mutation p.G446V 0.30 deleterious(0.01) benign(0.178) TCGA-86-8585-01 13 78472344 78472344 G C EDNRB Missense_Mutation p.S530R 0.16 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-86-8585-01 13 79945122 79945122 C T RBM26 Missense_Mutation p.D198N 0.24 tolerated(0.07) unknown(0) TCGA-86-8585-01 13 95271574 95271574 C T GPR180 Missense_Mutation p.H226Y 0.28 deleterious(0) probably_damaging(0.993) TCGA-86-8585-01 14 102916192 102916192 A T TECPR2 Missense_Mutation p.K1101M 0.29 deleterious(0) possibly_damaging(0.614) TCGA-86-8585-01 14 20345099 20345099 G A OR4K2 Missense_Mutation p.V225M 0.23 deleterious(0.02) benign(0.091) TCGA-86-8585-01 14 20482588 20482588 G T OR4K14 Nonsense_Mutation p.C255* 0.12 TCGA-86-8585-01 14 21769312 21769312 C A RPGRIP1 Missense_Mutation p.P136T 0.26 tolerated(0.08) benign(0.164) TCGA-86-8585-01 14 22038316 22038316 C G OR10G3 Missense_Mutation p.R187T 0.17 deleterious(0.02) benign(0.026) TCGA-86-8585-01 14 23451481 23451481 C A AJUBA 5'UTR 0.22 TCGA-86-8585-01 14 29237721 29237721 C A FOXG1 Silent p.G412G 0.16 TCGA-86-8585-01 14 35234329 35234329 C A BAZ1A Silent p.A1149A 0.22 TCGA-86-8585-01 14 35872943 35872943 C T NFKBIA Missense_Mutation p.V97M 0.30 tolerated(0.19) benign(0.207) TCGA-86-8585-01 14 36008837 36008837 C G RALGAPA1 Missense_Mutation p.D2055H 0.19 deleterious(0) probably_damaging(0.998) TCGA-86-8585-01 14 42356883 42356883 C G LRFN5 Missense_Mutation p.T352R 0.29 tolerated(0.12) benign(0.009) TCGA-86-8585-01 14 58813176 58813176 C G ARID4A Missense_Mutation p.L343V 0.16 deleterious(0) probably_damaging(0.999) TCGA-86-8585-01 14 64498014 64498014 A T SYNE2 Missense_Mutation p.Q2387L 0.14 benign(0.001) TCGA-86-8585-01 14 64519227 64519227 A T SYNE2 Missense_Mutation p.T2866S 0.13 probably_damaging(0.998) TCGA-86-8585-01 14 70712893 70712893 G T ADAM21P1 RNA 0.18 TCGA-86-8585-01 14 73404690 73404690 A T DCAF4 Missense_Mutation p.N2Y 0.10 tolerated_low_confidence(0.26) possibly_damaging(0.902) TCGA-86-8585-01 14 80669370 80669370 C A DIO2 Missense_Mutation p.D198Y 0.36 deleterious(0) probably_damaging(0.953) TCGA-86-8585-01 14 81972450 81972450 T A SEL1L Missense_Mutation p.Y159F 0.23 tolerated_low_confidence(0.07) probably_damaging(0.976) TCGA-86-8585-01 14 92909797 92909797 C T SLC24A4 Silent p.I212I 0.31 TCGA-86-8585-01 14 94528619 94528619 T A DDX24 Missense_Mutation p.N356I 0.17 deleterious(0.03) possibly_damaging(0.683) TCGA-86-8585-01 14 94756953 94756953 G T SERPINA10 5'UTR 0.29 TCGA-86-8585-01 14 96707445 96707445 G A BDKRB2 Silent p.K260K 0.13 TCGA-86-8585-01 14 97313603 97313603 G T VRK1 Missense_Mutation p.W99L 0.18 deleterious(0) probably_damaging(0.996) TCGA-86-8585-01 15 102358500 102358500 G A OR4F15 Silent p.A37A 0.12 TCGA-86-8585-01 15 20170052 20170052 C T IGHV1OR15-9 Missense_Mutation p.D74N 0.10 tolerated(1) benign(0.006) TCGA-86-8585-01 15 20170094 20170094 G A IGHV1OR15-9 Missense_Mutation p.H60Y 0.12 deleterious(0) benign(0.111) TCGA-86-8585-01 15 25494419 25494419 T A SNORD115-43 RNA 0.16 TCGA-86-8585-01 15 25966903 25966903 G T ATP10A Missense_Mutation p.Q422K 0.16 deleterious(0.04) benign(0.12) TCGA-86-8585-01 15 26806214 26806214 G T GABRB3 Silent p.V315V 0.17 TCGA-86-8585-01 15 27126076 27126076 T A GABRA5 Nonsense_Mutation p.L57* 0.19 TCGA-86-8585-01 15 28511043 28511043 C T HERC2 Missense_Mutation p.G559E 0.08 probably_damaging(1) TCGA-86-8585-01 15 31318357 31318357 C A TRPM1 Missense_Mutation p.R1222L 0.23 deleterious(0.01) probably_damaging(0.937) TCGA-86-8585-01 15 31819434 31819434 C T OTUD7A Missense_Mutation p.E244K 0.18 deleterious(0.01) possibly_damaging(0.814) TCGA-86-8585-01 15 34355859 34355859 A G CHRM5 Missense_Mutation p.K314R 0.14 tolerated(0.53) benign(0.014) TCGA-86-8585-01 15 36936519 36936519 T G C15orf41 Missense_Mutation p.Y48D 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-86-8585-01 15 40916222 40916222 G A CASC5 Missense_Mutation p.E1280K 0.11 tolerated(0.09) benign(0.067) TCGA-86-8585-01 15 44914890 44914890 A G SPG11 Intron 0.19 TCGA-86-8585-01 15 45710780 45710780 G A SPATA5L1 Missense_Mutation p.C665Y 0.18 tolerated(0.56) benign(0.001) TCGA-86-8585-01 15 48451091 48451091 A T MYEF2 Missense_Mutation p.L249Q 0.06 deleterious(0) probably_damaging(1) TCGA-86-8585-01 15 49059610 49059610 C A CEP152 Missense_Mutation p.R690L 0.12 tolerated(0.16) probably_damaging(0.999) TCGA-86-8585-01 15 50215579 50215579 G T ATP8B4 Silent p.L585L 0.12 TCGA-86-8585-01 15 50906340 50906340 T A TRPM7 Missense_Mutation p.S539C 0.19 deleterious(0.01) possibly_damaging(0.765) TCGA-86-8585-01 15 51634156 51634156 A G GLDN Missense_Mutation p.N92S 0.09 tolerated(0.24) benign(0.007) TCGA-86-8585-01 15 55783433 55783433 C A DYX1C1 Missense_Mutation p.R98I 0.11 tolerated(0.07) benign(0.003) TCGA-86-8585-01 15 56657841 56657841 A T TEX9 Missense_Mutation p.D31V 0.12 deleterious(0) probably_damaging(1) TCGA-86-8585-01 15 62208143 62208143 C A VPS13C Nonsense_Mutation p.E2712* 0.21 TCGA-86-8585-01 15 64423907 64423907 A T SNX1 Missense_Mutation p.Q346L 0.08 tolerated(0.37) benign(0.002) TCGA-86-8585-01 15 68617469 68617469 C T ITGA11 Silent p.S774S 0.14 TCGA-86-8585-01 15 69548656 69548656 G A GLCE Missense_Mutation p.D171N 0.20 tolerated(0.53) benign(0.007) TCGA-86-8585-01 15 72668122 72668122 G A HEXA Silent p.A64A 0.11 TCGA-86-8585-01 15 73552694 73552694 G A NEO1 Silent p.E762E 0.11 TCGA-86-8585-01 15 75980590 75980590 C A CSPG4 Missense_Mutation p.R939L 0.14 tolerated(0.15) benign(0.004) TCGA-86-8585-01 15 75983081 75983081 G A CSPG4 Missense_Mutation p.P109S 0.19 tolerated(0.41) benign(0.009) TCGA-86-8585-01 15 76467961 76467961 G C C15orf27 Missense_Mutation p.K238N 0.13 tolerated(0.08) probably_damaging(0.998) TCGA-86-8585-01 15 78893797 78893797 G T CHRNA3 Missense_Mutation p.P396H 0.16 tolerated(0.33) benign(0.004) TCGA-86-8585-01 15 81584927 81584927 G T IL16 Missense_Mutation p.G484V 0.09 deleterious(0) probably_damaging(0.979) TCGA-86-8585-01 15 86311278 86311278 G A KLHL25 Silent p.P588P 0.12 TCGA-86-8585-01 15 91293069 91293069 A G BLM Missense_Mutation p.R191G 0.13 deleterious(0.04) benign(0.421) TCGA-86-8585-01 15 91337466 91337466 G T BLM Missense_Mutation p.C1030F 0.07 deleterious(0) probably_damaging(0.999) TCGA-86-8585-01 15 93007589 93007589 G C ST8SIA2 Missense_Mutation p.V368L 0.06 benign(0.439) TCGA-86-8585-01 16 10274054 10274054 A T GRIN2A Missense_Mutation p.L72Q 0.29 deleterious(0) possibly_damaging(0.782) TCGA-86-8585-01 16 12758662 12758662 C A CPPED1 3'UTR 0.32 TCGA-86-8585-01 16 12897562 12897562 A T CPPED1 Splice_Site p.X24_splice 0.29 TCGA-86-8585-01 16 1503889 1503889 A T CLCN7 Missense_Mutation p.V387E 0.17 deleterious(0) benign(0.427) TCGA-86-8585-01 16 16208748 16208748 A T ABCC1 Missense_Mutation p.S1069C 0.11 tolerated(0.08) probably_damaging(1) TCGA-86-8585-01 16 19592847 19592847 G T C16orf62 Missense_Mutation p.G260C 0.25 deleterious(0.03) probably_damaging(0.987) TCGA-86-8585-01 16 20357606 20357606 C G UMOD Missense_Mutation p.V342L 0.08 tolerated(0.16) benign(0.023) TCGA-86-8585-01 16 20787327 20787327 G C ACSM3 Missense_Mutation p.R129T 0.20 deleterious(0) possibly_damaging(0.557) TCGA-86-8585-01 16 2347836 2347836 C G ABCA3 Silent p.R661R 0.10 TCGA-86-8585-01 16 27078297 27078297 C G C16orf82 RNA 0.11 TCGA-86-8585-01 16 3556381 3556381 G C CLUAP1 Missense_Mutation p.R62P 0.25 deleterious(0) probably_damaging(1) TCGA-86-8585-01 16 3614885 3614885 A T NLRC3 Missense_Mutation p.D98E 0.16 tolerated(0.39) benign(0.003) TCGA-86-8585-01 16 3786795 3786795 C A CREBBP Missense_Mutation p.W1472C 0.17 unknown(0) TCGA-86-8585-01 16 46771641 46771641 C A MYLK3 Missense_Mutation p.G328V 0.32 tolerated(0.12) benign(0.01) TCGA-86-8585-01 16 48596288 48596288 C T N4BP1 Missense_Mutation p.C89Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-86-8585-01 16 53281338 53281338 C T CHD9 Silent p.A1196A 0.28 TCGA-86-8585-01 16 55516877 55516877 G A MMP2 Silent p.L70L 0.17 TCGA-86-8585-01 16 55539435 55539435 G T MMP2 3'UTR 0.34 TCGA-86-8585-01 16 56878488 56878488 G A NUP93 Silent p.A809A 0.09 TCGA-86-8585-01 16 57147280 57147280 G A CPNE2 Silent p.E87E 0.11 TCGA-86-8585-01 16 57552090 57552090 C A CCDC102A Missense_Mutation p.A380S 0.35 tolerated(0.12) benign(0.015) TCGA-86-8585-01 16 61851475 61851475 A T CDH8 Silent p.T395T 0.22 TCGA-86-8585-01 16 61859043 61859043 G T CDH8 Silent p.A236A 0.30 TCGA-86-8585-01 16 64982678 64982678 A T CDH11 Intron 0.37 TCGA-86-8585-01 16 70415748 70415748 G A ST3GAL2 Silent p.F299F 0.06 TCGA-86-8585-01 16 71663396 71663396 A G MARVELD3 Silent p.R198R 0.38 TCGA-86-8585-01 16 726880 726880 C T RHBDL1 Missense_Mutation p.S202L 0.10 tolerated(1) benign(0.01) TCGA-86-8585-01 17 10406147 10406147 G A MYH1 Missense_Mutation p.H1007Y 0.25 deleterious(0.02) possibly_damaging(0.609) TCGA-86-8585-01 17 18087954 18087954 T G ALKBH5 Missense_Mutation p.Y133D 0.22 deleterious(0) probably_damaging(1) TCGA-86-8585-01 17 26086071 26086071 G T NOS2 Missense_Mutation p.L1064M 0.14 deleterious(0.02) probably_damaging(0.996) TCGA-86-8585-01 17 31322461 31322461 G T SPACA3 Silent p.V23V 0.27 TCGA-86-8585-01 17 32483003 32483003 G A ASIC2 Silent p.F183F 0.06 TCGA-86-8585-01 17 39778633 39778633 C A KRT17 Missense_Mutation p.A216S 0.31 deleterious(0.01) probably_damaging(0.938) TCGA-86-8585-01 17 46628509 46628509 G A HOXB3 Silent p.G161G 0.33 TCGA-86-8585-01 17 47785106 47785106 G A SLC35B1 Silent p.I30I 0.12 TCGA-86-8585-01 17 56774052 56774052 A G RAD51C Splice_Site p.X135_splice 0.11 TCGA-86-8585-01 17 59668499 59668499 C A NACA2 Nonsense_Mutation p.E15* 0.08 TCGA-86-8585-01 17 60005201 60005201 G A INTS2 Intron 0.12 TCGA-86-8585-01 17 60069976 60069976 C T MED13 Missense_Mutation p.D730N 0.33 deleterious(0.01) benign(0.012) TCGA-86-8585-01 17 60088349 60088349 T C MED13 Missense_Mutation p.N510S 0.24 tolerated(1) benign(0.014) TCGA-86-8585-01 17 62567946 62567946 C T SMURF2 Missense_Mutation p.R329Q 0.09 deleterious(0.03) possibly_damaging(0.871) TCGA-86-8585-01 17 72436917 72436917 G T GPRC5C Missense_Mutation p.Q379H 0.15 deleterious(0.01) probably_damaging(0.94) TCGA-86-8585-01 17 72588888 72588888 C G C17orf77 Missense_Mutation p.P235A 0.12 unknown(0) TCGA-86-8585-01 17 74869044 74869044 A T MGAT5B Missense_Mutation p.E71D 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.72) TCGA-86-8585-01 17 7578469 7578469 C - TP53 Frame_Shift_Del p.G154Afs*16 0.27 TCGA-86-8585-01 17 7749913 7749913 G T KDM6B Missense_Mutation p.G189V 0.30 unknown(0) TCGA-86-8585-01 17 78092010 78092010 A T GAA Missense_Mutation p.T834S 0.23 tolerated(0.21) benign(0.06) TCGA-86-8585-01 17 79660584 79660584 G C HGS Silent p.L238L 0.10 TCGA-86-8585-01 17 9489128 9489128 G C WDR16 Missense_Mutation p.E37Q 0.04 tolerated(0.23) benign(0.024) TCGA-86-8585-01 18 10680336 10680336 T C PIEZO2 Silent p.K2491K 0.13 TCGA-86-8585-01 18 14763769 14763769 C A ANKRD30B Missense_Mutation p.T302K 0.18 tolerated(0.07) benign(0.244) TCGA-86-8585-01 18 14764048 14764048 C A ANKRD30B Missense_Mutation p.A395E 0.13 tolerated(0.2) benign(0.061) TCGA-86-8585-01 18 30873239 30873239 A G CCDC178 Missense_Mutation p.Y354H 0.19 deleterious(0) possibly_damaging(0.455) TCGA-86-8585-01 18 32335939 32335939 G C DTNA Splice_Site 0.19 TCGA-86-8585-01 18 33557534 33557534 G A C18orf21 Silent p.S154S 0.04 TCGA-86-8585-01 18 45377645 45377645 C A SMAD2 Missense_Mutation p.D262Y 0.24 deleterious(0.04) benign(0.029) TCGA-86-8585-01 18 55144054 55144054 C A ONECUT2 3'UTR 0.46 TCGA-86-8585-01 18 7050846 7050846 C G LAMA1 Silent p.T145T 0.16 TCGA-86-8585-01 18 73122772 73122772 G A SMIM21 3'UTR 0.21 TCGA-86-8585-01 18 7888194 7888194 G C PTPRM Missense_Mutation p.C96S 0.15 deleterious(0) probably_damaging(1) TCGA-86-8585-01 19 1058239 1058239 A G ABCA7 Missense_Mutation p.Q1707R 0.09 deleterious(0) probably_damaging(0.998) TCGA-86-8585-01 19 11129631 11129631 A T SMARCA4 Splice_Site p.X813_splice 0.31 TCGA-86-8585-01 19 11508197 11508197 G A RGL3 Missense_Mutation p.A614V 0.32 tolerated(0.45) unknown(0) TCGA-86-8585-01 19 12187679 12187679 G T ZNF844 Missense_Mutation p.D582Y 0.60 deleterious_low_confidence(0.05) possibly_damaging(0.861) TCGA-86-8585-01 19 12758381 12758381 G A MAN2B1 Missense_Mutation p.S899L 0.13 deleterious(0.03) benign(0.225) TCGA-86-8585-01 19 13397506 13397506 G T CACNA1A Missense_Mutation p.R1122S 0.28 possibly_damaging(0.858) TCGA-86-8585-01 19 15221490 15221490 C A SYDE1 Missense_Mutation p.Q412K 0.46 tolerated(1) benign(0.008) TCGA-86-8585-01 19 16008395 16008395 C A CYP4F2 Silent p.L9L 0.21 TCGA-86-8585-01 19 16902312 16902312 C T NWD1 Missense_Mutation p.T1031M 0.33 tolerated(0.05) benign(0.202) TCGA-86-8585-01 19 17768923 17768923 A G UNC13A Missense_Mutation p.Y239H 0.21 tolerated_low_confidence(0.4) benign(0.001) TCGA-86-8585-01 19 19168451 19168451 C T ARMC6 3'UTR 0.14 TCGA-86-8585-01 19 20003345 20003345 G T ZNF253 Missense_Mutation p.G430V 0.40 deleterious(0) probably_damaging(0.996) TCGA-86-8585-01 19 21300858 21300858 G T ZNF714 Missense_Mutation p.R463L 0.27 tolerated(0.64) benign(0.036) TCGA-86-8585-01 19 21476639 21476640 - G ZNF708 Frame_Shift_Ins p.S377Lfs*5 0.19 TCGA-86-8585-01 19 21579926 21579926 G C ZNF493 5'Flank 0.31 TCGA-86-8585-01 19 22155952 22155952 C T ZNF208 Silent p.K628K 0.29 TCGA-86-8585-01 19 2425457 2425457 C A TMPRSS9 Missense_Mutation p.A995D 0.24 deleterious(0) probably_damaging(1) TCGA-86-8585-01 19 33635774 33635774 C A WDR88 Missense_Mutation p.R138S 0.11 deleterious(0.01) possibly_damaging(0.604) TCGA-86-8585-01 19 35501099 35501099 G T GRAMD1A Silent p.T143T 0.25 TCGA-86-8585-01 19 36024471 36024471 C G GAPDHS Silent p.V14V 0.18 TCGA-86-8585-01 19 36321794 36321794 C A NPHS1 Silent p.T1182T 0.15 TCGA-86-8585-01 19 36365433 36365433 G A APLP1 Missense_Mutation p.E362K 0.11 deleterious(0.03) probably_damaging(1) TCGA-86-8585-01 19 36605292 36605292 T G POLR2I Missense_Mutation p.Q46P 0.28 deleterious(0.01) possibly_damaging(0.566) TCGA-86-8585-01 19 36831776 36831776 C A ZFP14 Missense_Mutation p.G318W 0.23 deleterious(0.01) probably_damaging(1) TCGA-86-8585-01 19 38590664 38590664 C T SIPA1L3 Silent p.T576T 0.19 TCGA-86-8585-01 19 40996131 40996131 C A SPTBN4 Silent p.V157V 0.18 TCGA-86-8585-01 19 43910635 43910635 C A TEX101 5'UTR 0.28 TCGA-86-8585-01 19 45811719 45811719 T G CKM Missense_Mutation p.K242T 0.19 tolerated(0.05) benign(0.246) TCGA-86-8585-01 19 46318015 46318015 C A RSPH6A Missense_Mutation p.E140D 0.14 tolerated_low_confidence(1) benign(0.002) TCGA-86-8585-01 19 48734062 48734062 G A CARD8 Silent p.I248I 0.20 TCGA-86-8585-01 19 48830794 48830794 C T EMP3 Missense_Mutation p.P32L 0.14 tolerated(0.26) possibly_damaging(0.679) TCGA-86-8585-01 19 49260277 49260277 G C FGF21 Silent p.L110L 0.05 TCGA-86-8585-01 19 49540101 49540101 C G CTB-60B18.6 5'UTR 0.20 TCGA-86-8585-01 19 49793365 49793365 G A SLC6A16 3'UTR 0.23 TCGA-86-8585-01 19 49965973 49965973 C G ALDH16A1 Silent p.V353V 0.25 TCGA-86-8585-01 19 50474597 50474597 A G SIGLEC16 RNA 0.19 TCGA-86-8585-01 19 51359578 51359578 C T KLK3 Silent p.A43A 0.19 TCGA-86-8585-01 19 52394780 52394780 C G ZNF649 Missense_Mutation p.K203N 0.05 deleterious(0) probably_damaging(0.928) TCGA-86-8585-01 19 53770224 53770224 G T VN1R4 Missense_Mutation p.T232K 0.10 deleterious(0) probably_damaging(0.996) TCGA-86-8585-01 19 54189758 54189758 T A MIR519C RNA 0.15 TCGA-86-8585-01 19 54782735 54782735 C A LILRB2 Missense_Mutation p.C296F 0.16 deleterious(0.01) probably_damaging(1) TCGA-86-8585-01 19 56953918 56953918 C A ZNF667 Missense_Mutation p.C149F 0.11 deleterious(0) probably_damaging(0.999) TCGA-86-8585-01 19 57325927 57325927 C A PEG3 Missense_Mutation p.A1295S 0.20 tolerated(1) benign(0.023) TCGA-86-8585-01 19 57327914 57327914 A G PEG3 Silent p.C632C 0.21 TCGA-86-8585-01 19 57642109 57642109 C A USP29 Missense_Mutation p.P689Q 0.20 tolerated(0.47) probably_damaging(0.999) TCGA-86-8585-01 19 57868710 57868710 G T ZNF304 Silent p.V491V 0.19 TCGA-86-8585-01 19 57868711 57868711 C T ZNF304 Nonsense_Mutation p.Q492* 0.19 TCGA-86-8585-01 19 581373 581373 A G BSG Missense_Mutation p.E284G 0.08 deleterious(0) probably_damaging(0.964) TCGA-86-8585-01 19 58361402 58361402 G A ZNF587 5'UTR 0.16 TCGA-86-8585-01 19 58371582 58371582 A G ZNF587 3'UTR 0.15 TCGA-86-8585-01 19 5844736 5844736 C T FUT3 Missense_Mutation p.D39N 0.25 tolerated(0.3) probably_damaging(0.928) TCGA-86-8585-01 19 58601615 58601615 G C ZSCAN18 Missense_Mutation p.A63G 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-86-8585-01 19 59021373 59021373 C A SLC27A5 Splice_Site p.X300_splice 0.19 TCGA-86-8585-01 19 603810 603810 C T HCN2 Missense_Mutation p.P300L 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-86-8585-01 19 6417804 6417804 C G KHSRP Missense_Mutation p.E343Q 0.22 deleterious(0) possibly_damaging(0.449) TCGA-86-8585-01 19 8196582 8196582 C A FBN3 Missense_Mutation p.V616L 0.24 tolerated(0.09) benign(0.103) TCGA-86-8585-01 19 9006696 9006696 C G MUC16 Missense_Mutation p.M13184I 0.29 probably_damaging(0.98) TCGA-86-8585-01 19 9070865 9070865 G T MUC16 Missense_Mutation p.S5527R 0.22 unknown(0) TCGA-86-8585-01 19 9088965 9088965 C T MUC16 Silent p.Q950Q 0.15 TCGA-86-8585-01 1 10041150 10041150 G C NMNAT1 Missense_Mutation p.E121Q 0.17 tolerated(0.27) benign(0.262) TCGA-86-8585-01 1 101186200 101186200 C A VCAM1 Missense_Mutation p.S78Y 0.21 deleterious(0) probably_damaging(1) TCGA-86-8585-01 1 103364232 103364232 G T COL11A1 Missense_Mutation p.P1413H 0.21 unknown(0) TCGA-86-8585-01 1 103471629 103471629 C A COL11A1 Missense_Mutation p.A596S 0.24 unknown(0) TCGA-86-8585-01 1 103544306 103544306 C A COL11A1 Silent p.G132G 0.18 TCGA-86-8585-01 1 111061074 111061074 C A KCNA10 Silent p.L112L 0.26 TCGA-86-8585-01 1 114948095 114948095 C G TRIM33 Missense_Mutation p.C902S 0.09 deleterious(0) probably_damaging(0.999) TCGA-86-8585-01 1 11576218 11576218 G T PTCHD2 Missense_Mutation p.Q583H 0.29 deleterious(0) probably_damaging(0.999) TCGA-86-8585-01 1 117061810 117061810 G T CD58 Intron 0.16 TCGA-86-8585-01 1 120461934 120461934 C T NOTCH2 Splice_Site p.X1927_splice 0.07 TCGA-86-8585-01 1 120471798 120471798 C A NOTCH2 Silent p.R1231R 0.12 TCGA-86-8585-01 1 12144544 12144544 T G TNFRSF8 Missense_Mutation p.C29W 0.26 deleterious(0) possibly_damaging(0.889) TCGA-86-8585-01 1 12952858 12952858 C A PRAMEF10 Missense_Mutation p.M438I 0.29 tolerated(0.38) benign(0.02) TCGA-86-8585-01 1 144881543 144881543 G T PDE4DIP Missense_Mutation p.S1218Y 0.06 deleterious(0) probably_damaging(0.979) TCGA-86-8585-01 1 152082391 152082391 C G TCHH Missense_Mutation p.R1101T 0.13 unknown(0) TCGA-86-8585-01 1 152329111 152329111 C A FLG2 Missense_Mutation p.G384V 0.30 unknown(0) TCGA-86-8585-01 1 152329112 152329112 C A FLG2 Missense_Mutation p.G384W 0.30 unknown(0) TCGA-86-8585-01 1 153283181 153283181 C A PGLYRP3 5'UTR 0.41 TCGA-86-8585-01 1 154680542 154680542 C G KCNN3 Silent p.V702V 0.11 TCGA-86-8585-01 1 154744528 154744528 G A KCNN3 Silent p.I457I 0.11 TCGA-86-8585-01 1 156565358 156565358 C G GPATCH4 Missense_Mutation p.D259H 0.09 deleterious(0.01) possibly_damaging(0.491) TCGA-86-8585-01 1 156639120 156639120 C T NES Silent p.E1620E 0.38 TCGA-86-8585-01 1 158450184 158450184 T A OR10R2 Missense_Mutation p.F173I 0.13 deleterious(0.05) benign(0.17) TCGA-86-8585-01 1 158577110 158577110 T C OR10Z1 Silent p.N294N 0.37 TCGA-86-8585-01 1 158585064 158585064 G T SPTA1 Missense_Mutation p.Q2244K 0.29 deleterious(0) probably_damaging(0.998) TCGA-86-8585-01 1 158592898 158592898 G C SPTA1 Missense_Mutation p.Q1999E 0.11 tolerated(0.78) benign(0.007) TCGA-86-8585-01 1 165218788 165218788 C A LMX1A Missense_Mutation p.S118I 0.22 tolerated(0.08) possibly_damaging(0.529) TCGA-86-8585-01 1 167341272 167341272 G T POU2F1 Missense_Mutation p.G134V 0.34 deleterious_low_confidence(0.03) unknown(0) TCGA-86-8585-01 1 167962666 167962666 G T DCAF6 Missense_Mutation p.E297D 0.38 tolerated(0.19) probably_damaging(0.969) TCGA-86-8585-01 1 175046753 175046753 G T TNN Missense_Mutation p.D67Y 0.09 deleterious(0.01) possibly_damaging(0.707) TCGA-86-8585-01 1 175365873 175365873 C T TNR Silent p.P349P 0.10 TCGA-86-8585-01 1 176132088 176132088 C A RFWD2 Nonsense_Mutation p.G227* 0.38 TCGA-86-8585-01 1 176564228 176564228 C A PAPPA2 Silent p.P496P 0.11 TCGA-86-8585-01 1 177933362 177933362 C T SEC16B Missense_Mutation p.E196K 0.10 deleterious(0) possibly_damaging(0.698) TCGA-86-8585-01 1 179100544 179100544 T A ABL2 Missense_Mutation p.K98M 0.34 deleterious(0) possibly_damaging(0.889) TCGA-86-8585-01 1 190234012 190234012 C T BRINP3 Missense_Mutation p.A201T 0.08 tolerated(0.1) benign(0.389) TCGA-86-8585-01 1 190234074 190234074 A T BRINP3 Missense_Mutation p.L180Q 0.36 deleterious(0) possibly_damaging(0.663) TCGA-86-8585-01 1 196197454 196197454 C A KCNT2 Missense_Mutation p.R1103L 0.12 deleterious(0) probably_damaging(0.994) TCGA-86-8585-01 1 196963358 196963358 G A CFHR5 Silent p.G193G 0.07 TCGA-86-8585-01 1 202571038 202571038 G T SYT2 Missense_Mutation p.Q261K 0.28 tolerated(0.4) benign(0) TCGA-86-8585-01 1 204587332 204587332 G - LRRN2 Frame_Shift_Del p.L597Cfs*29 0.20 TCGA-86-8585-01 1 204951083 204951083 A C NFASC Missense_Mutation p.Q802P 0.39 deleterious(0) probably_damaging(0.987) TCGA-86-8585-01 1 207647620 207647620 C G CR2 Missense_Mutation p.Q759E 0.23 tolerated(0.33) benign(0.031) TCGA-86-8585-01 1 211263908 211263908 A C KCNH1 Missense_Mutation p.C145W 0.09 tolerated(0.07) benign(0.137) TCGA-86-8585-01 1 215824112 215824112 G T USH2A Missense_Mutation p.P4722H 0.31 possibly_damaging(0.886) TCGA-86-8585-01 1 216741383 216741383 G A ESRRG Missense_Mutation p.A221V 0.37 tolerated(0.47) benign(0.221) TCGA-86-8585-01 1 218520046 218520046 G A TGFB2 Translation_Start_Site p.M1? 0.30 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-86-8585-01 1 220162124 220162124 C A EPRS Missense_Mutation p.K861N 0.29 deleterious(0) probably_damaging(0.999) TCGA-86-8585-01 1 222717515 222717515 G A HHIPL2 Missense_Mutation p.A113V 0.06 deleterious(0) probably_damaging(0.997) TCGA-86-8585-01 1 228495094 228495094 C G OBSCN Missense_Mutation p.H5067D 0.09 benign(0.261) TCGA-86-8585-01 1 231472103 231472103 G C EXOC8 Missense_Mutation p.F463L 0.10 deleterious(0) probably_damaging(0.999) TCGA-86-8585-01 1 232650572 232650572 C A SIPA1L2 Nonsense_Mutation p.E172* 0.10 TCGA-86-8585-01 1 235938216 235938216 C G LYST Missense_Mutation p.L1877F 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-86-8585-01 1 236646763 236646763 C T EDARADD 3'Flank 0.09 TCGA-86-8585-01 1 237038041 237038041 C T MTR Missense_Mutation p.S830L 0.18 deleterious(0) probably_damaging(1) TCGA-86-8585-01 1 237058772 237058772 G T MTR Missense_Mutation p.A1174S 0.21 deleterious(0) probably_damaging(1) TCGA-86-8585-01 1 237780692 237780692 G A RYR2 Missense_Mutation p.R1941H 0.12 probably_damaging(0.972) TCGA-86-8585-01 1 237823331 237823331 A T RYR2 Missense_Mutation p.K2752M 0.16 probably_damaging(1) TCGA-86-8585-01 1 237947340 237947340 C G RYR2 Missense_Mutation p.P4110A 0.30 possibly_damaging(0.896) TCGA-86-8585-01 1 23953719 23953719 C G MDS2 5'Flank 0.10 TCGA-86-8585-01 1 240975310 240975310 C A RGS7 Missense_Mutation p.W330C 0.07 deleterious(0) probably_damaging(0.926) TCGA-86-8585-01 1 245850360 245850360 G A KIF26B Missense_Mutation p.G1359S 0.20 tolerated(0.25) unknown(0) TCGA-86-8585-01 1 245851058 245851058 G A KIF26B Silent p.R1591R 0.47 TCGA-86-8585-01 1 247921010 247921010 G T OR1C1 Silent p.G233G 0.10 TCGA-86-8585-01 1 247921081 247921081 G C OR1C1 Missense_Mutation p.P210A 0.26 deleterious(0) benign(0.184) TCGA-86-8585-01 1 247921636 247921636 G C OR1C1 Missense_Mutation p.H25D 0.09 tolerated(0.18) benign(0.025) TCGA-86-8585-01 1 248112603 248112603 G T OR2L8 Missense_Mutation p.W148C 0.25 deleterious(0.01) probably_damaging(0.979) TCGA-86-8585-01 1 27226597 27226597 G C GPATCH3 Missense_Mutation p.Q113E 0.18 tolerated(0.32) benign(0.034) TCGA-86-8585-01 1 32542859 32542859 G A TMEM39B Missense_Mutation p.R177Q 0.09 tolerated(0.41) benign(0.011) TCGA-86-8585-01 1 34164514 34164514 C T CSMD2 Missense_Mutation p.G1215E 0.25 deleterious(0.02) probably_damaging(0.987) TCGA-86-8585-01 1 40704242 40704242 A G RLF Missense_Mutation p.S1290G 0.20 deleterious(0) probably_damaging(0.94) TCGA-86-8585-01 1 44087677 44087677 A G PTPRF 3'UTR 0.17 TCGA-86-8585-01 1 48918700 48918700 G A SPATA6 Missense_Mutation p.P52L 0.18 deleterious(0) probably_damaging(0.996) TCGA-86-8585-01 1 52530608 52530608 G C BTF3L4 Missense_Mutation p.E56Q 0.33 deleterious(0.01) possibly_damaging(0.901) TCGA-86-8585-01 1 70291430 70291430 G T LRRC7 Splice_Site p.X103_splice 0.17 TCGA-86-8585-01 1 75038364 75038364 C T C1orf173 Silent p.E1010E 0.21 TCGA-86-8585-01 1 87043670 87043670 G T CLCA4 Silent p.R679R 0.39 TCGA-86-8585-01 1 898496 898496 G T KLHL17 Silent p.G350G 0.20 TCGA-86-8585-01 20 10620412 10620412 C - JAG1 Frame_Shift_Del p.A1131Pfs*19 0.20 TCGA-86-8585-01 20 18296237 18296237 G A ZNF133 Missense_Mutation p.E247K 0.16 tolerated(0.06) benign(0.341) TCGA-86-8585-01 20 25655784 25655784 C A ZNF337 Nonsense_Mutation p.E714* 0.11 TCGA-86-8585-01 20 30409405 30409405 G T MYLK2 Missense_Mutation p.G213C 0.27 deleterious(0) possibly_damaging(0.855) TCGA-86-8585-01 20 31384649 31384649 G T DNMT3B Nonsense_Mutation p.E451* 0.27 TCGA-86-8585-01 20 45212240 45212240 G T SLC13A3 Missense_Mutation p.P397H 0.06 deleterious(0) probably_damaging(0.997) TCGA-86-8585-01 20 47710814 47710814 C A CSE1L Missense_Mutation p.T862N 0.20 tolerated(0.58) benign(0.01) TCGA-86-8585-01 20 57828976 57828976 G T ZNF831 Missense_Mutation p.E1404D 0.24 tolerated(0.06) possibly_damaging(0.649) TCGA-86-8585-01 20 61511128 61511128 C A DIDO1 Missense_Mutation p.E2060D 0.18 probably_damaging(0.985) TCGA-86-8585-01 20 61537321 61537321 C A DIDO1 Silent p.T502T 0.20 TCGA-86-8585-01 20 62559701 62559701 G T DNAJC5 Translation_Start_Site p.M1? 0.22 tolerated(0.11) benign(0.02) TCGA-86-8585-01 20 62705311 62705311 C A RGS19 Missense_Mutation p.Q183H 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-86-8585-01 20 745868 745868 T C SLC52A3 Missense_Mutation p.E184G 0.26 tolerated(0.31) benign(0.001) TCGA-86-8585-01 21 10863026 10863026 G T IGHV1OR21-1 Nonsense_Mutation p.E108* 0.10 TCGA-86-8585-01 21 10934071 10934071 G T TPTE Silent p.I302I 0.11 TCGA-86-8585-01 21 19726123 19726123 G C TMPRSS15 Missense_Mutation p.A313G 0.19 deleterious(0) possibly_damaging(0.72) TCGA-86-8585-01 21 27124528 27124528 G T GABPA Missense_Mutation p.R179L 0.26 deleterious(0.01) benign(0.107) TCGA-86-8585-01 21 34022605 34022605 T A SYNJ1 Missense_Mutation p.N1015Y 0.34 deleterious(0.02) benign(0.121) TCGA-86-8585-01 21 34924189 34924189 G A SON Silent p.Q884Q 0.13 TCGA-86-8585-01 21 36421187 36421187 C G RUNX1 Missense_Mutation p.D4H 0.11 deleterious_low_confidence(0) benign(0.001) TCGA-86-8585-01 21 44513289 44513289 C G U2AF1 Missense_Mutation p.G216R 0.36 tolerated(0.24) unknown(0) TCGA-86-8585-01 21 45736381 45736381 A T PFKL Missense_Mutation p.T304S 0.16 tolerated(0.32) benign(0) TCGA-86-8585-01 21 46101654 46101654 G T KRTAP12-1 3'UTR 0.13 TCGA-86-8585-01 21 46330678 46330678 G - ITGB2 Frame_Shift_Del p.P7Hfs*43 0.34 TCGA-86-8585-01 22 17449255 17449255 G T GAB4 Missense_Mutation p.T319N 0.18 deleterious_low_confidence(0.04) benign(0.005) TCGA-86-8585-01 22 21384501 21384501 G T SLC7A4 Missense_Mutation p.F374L 0.30 tolerated(0.13) benign(0.246) TCGA-86-8585-01 22 22324643 22324643 C T TOP3B Missense_Mutation p.E174K 0.27 deleterious(0) possibly_damaging(0.87) TCGA-86-8585-01 22 23956354 23956354 C A C22orf43 Missense_Mutation p.D197Y 0.26 deleterious_low_confidence(0.01) benign(0.101) TCGA-86-8585-01 22 26074850 26074850 G A ADRBK2 Missense_Mutation p.E239K 0.16 deleterious(0) probably_damaging(0.957) TCGA-86-8585-01 22 29091800 29091800 C A CHEK2 Missense_Mutation p.G429V 0.26 deleterious(0) probably_damaging(0.998) TCGA-86-8585-01 22 30387538 30387538 A G MTMR3 Silent p.R113R 0.26 TCGA-86-8585-01 22 31006973 31006973 C T TCN2 Silent p.L60L 0.14 TCGA-86-8585-01 22 32843274 32843274 C A BPIFC Missense_Mutation p.G100V 0.29 deleterious(0) probably_damaging(0.998) TCGA-86-8585-01 22 35789501 35789501 C G HMOX1 Silent p.L259L 0.09 TCGA-86-8585-01 22 37471253 37471253 T A TMPRSS6 Missense_Mutation p.T431S 0.30 deleterious(0.04) benign(0.165) TCGA-86-8585-01 22 40711402 40711402 G T TNRC6B Silent p.L1598L 0.26 TCGA-86-8585-01 22 44585081 44585081 C A PARVG Missense_Mutation p.A112D 0.18 deleterious(0.02) possibly_damaging(0.493) TCGA-86-8585-01 2 103095476 103095476 C A SLC9A4 Missense_Mutation p.F145L 0.07 deleterious(0.02) possibly_damaging(0.906) TCGA-86-8585-01 2 108496514 108496514 T C RGPD4 Missense_Mutation p.L1672P 0.28 deleterious_low_confidence(0) benign(0.262) TCGA-86-8585-01 2 110917824 110917824 C T NPHP1 Silent p.S377S 0.07 TCGA-86-8585-01 2 112834846 112834846 C G TMEM87B Missense_Mutation p.S193R 0.12 tolerated(0.26) benign(0.005) TCGA-86-8585-01 2 112942863 112942863 C T FBLN7 Silent p.S298S 0.22 TCGA-86-8585-01 2 120125260 120125260 A G DBI Intron 0.33 TCGA-86-8585-01 2 121742150 121742150 C - GLI2 Frame_Shift_Del p.K597Rfs*98 0.22 TCGA-86-8585-01 2 127950719 127950719 C A CYP27C1 Missense_Mutation p.C318F 0.26 deleterious(0) probably_damaging(1) TCGA-86-8585-01 2 128381751 128381751 C A MYO7B Missense_Mutation p.S1275R 0.25 deleterious(0.03) benign(0.063) TCGA-86-8585-01 2 138425373 138425373 G C THSD7B Missense_Mutation p.V1564L 0.19 tolerated(0.09) unknown(0) TCGA-86-8585-01 2 139429119 139429119 C A NXPH2 Silent p.L56L 0.25 TCGA-86-8585-01 2 15644338 15644338 C A NBAS Splice_Site p.X296_splice 0.26 TCGA-86-8585-01 2 157182346 157182346 C AA NR4A2 Frame_Shift_Ins p.L570Sfs*20 0.22 TCGA-86-8585-01 2 163144753 163144753 G T IFIH1 Silent p.L329L 0.29 TCGA-86-8585-01 2 165351035 165351035 C A GRB14 Splice_Site p.X461_splice 0.23 TCGA-86-8585-01 2 165949021 165949021 C A SCN3A Missense_Mutation p.G1517V 0.28 deleterious(0) probably_damaging(0.978) TCGA-86-8585-01 2 168104791 168104791 C - XIRP2 Frame_Shift_Del p.P2297Hfs*20 0.25 TCGA-86-8585-01 2 170003401 170003401 C A LRP2 Missense_Mutation p.R4220L 0.33 probably_damaging(1) TCGA-86-8585-01 2 170115561 170115561 C - LRP2 Frame_Shift_Del p.S830Rfs*3 0.21 TCGA-86-8585-01 2 173460638 173460638 G T PDK1 Missense_Mutation p.D418Y 0.26 deleterious(0) possibly_damaging(0.857) TCGA-86-8585-01 2 179247977 179247977 G A OSBPL6 Silent p.S641S 0.28 TCGA-86-8585-01 2 179404588 179404588 A G TTN Missense_Mutation p.I32735T 0.25 TCGA-86-8585-01 2 179467180 179467180 T A TTN Missense_Mutation p.T18317S 0.30 TCGA-86-8585-01 2 179473378 179473378 C A TTN Missense_Mutation p.G17454C 0.18 TCGA-86-8585-01 2 179495841 179495841 T C TTN Missense_Mutation p.K14645R 0.29 TCGA-86-8585-01 2 179577862 179577862 G A TTN Missense_Mutation p.A9000V 0.21 TCGA-86-8585-01 2 182542393 182542393 C A NEUROD1 3'UTR 0.28 TCGA-86-8585-01 2 189875486 189875486 G T COL3A1 Missense_Mutation p.S1375I 0.28 unknown(0) TCGA-86-8585-01 2 198436644 198436644 A G RFTN2 3'UTR 0.28 TCGA-86-8585-01 2 198498550 198498550 C T RFTN2 Missense_Mutation p.G204R 0.20 tolerated(0.07) benign(0.315) TCGA-86-8585-01 2 202245742 202245742 T A TRAK2 Missense_Mutation p.S757C 0.30 tolerated(0.06) probably_damaging(0.971) TCGA-86-8585-01 2 202899484 202899484 G T FZD7 Missense_Mutation p.E38D 0.10 tolerated(0.39) benign(0.005) TCGA-86-8585-01 2 207174292 207174292 G T ZDBF2 Silent p.L1680L 0.30 TCGA-86-8585-01 2 220422584 220422584 G A OBSL1 Missense_Mutation p.P1251S 0.08 tolerated(0.27) benign(0.052) TCGA-86-8585-01 2 224746769 224746769 C - WDFY1 Frame_Shift_Del p.Q319Rfs*41 0.21 TCGA-86-8585-01 2 228109676 228109676 G A COL4A3 Missense_Mutation p.G97R 0.26 probably_damaging(1) TCGA-86-8585-01 2 23980771 23980771 C T ATAD2B Missense_Mutation p.G1199R 0.12 tolerated(0.08) possibly_damaging(0.826) TCGA-86-8585-01 2 240085607 240085607 C A HDAC4 Missense_Mutation p.S168I 0.24 deleterious(0) probably_damaging(0.998) TCGA-86-8585-01 2 26690338 26690338 C T OTOF Silent p.K1374K 0.17 TCGA-86-8585-01 2 27454929 27454929 G A CAD Missense_Mutation p.E828K 0.14 tolerated(0.24) benign(0.032) TCGA-86-8585-01 2 33952684 33952684 G T AC009499.1 Intron 0.16 TCGA-86-8585-01 2 38301582 38301582 A T CYP1B1 Nonsense_Mutation p.L317* 0.35 TCGA-86-8585-01 2 43571354 43571354 T C THADA Missense_Mutation p.Y1417C 0.18 deleterious(0) benign(0.021) TCGA-86-8585-01 2 47637473 47637473 G T MSH2 Nonsense_Mutation p.G203* 0.18 TCGA-86-8585-01 2 61180221 61180221 C T PUS10 Missense_Mutation p.E407K 0.15 deleterious(0) probably_damaging(0.927) TCGA-86-8585-01 2 61412736 61412736 A G AHSA2 Missense_Mutation p.I59V 0.21 tolerated(0.55) benign(0.02) TCGA-86-8585-01 2 61753541 61753541 C A XPO1 Intron 0.28 TCGA-86-8585-01 2 71299781 71299781 G T NAGK Silent p.V168V 0.24 TCGA-86-8585-01 2 71766320 71766320 C T DYSF Silent p.T509T 0.17 TCGA-86-8585-01 2 74699247 74699247 C T MRPL53 Silent p.%3D 0.08 TCGA-86-8585-01 2 75914961 75914961 C A GCFC2 Missense_Mutation p.R561L 0.20 deleterious(0) possibly_damaging(0.566) TCGA-86-8585-01 2 79254235 79254235 C A REG3G Missense_Mutation p.L91M 0.17 tolerated(0.1) possibly_damaging(0.876) TCGA-86-8585-01 2 79971532 79971532 C A CTNNA2 Missense_Mutation p.T41K 0.16 tolerated(0.35) benign(0.149) TCGA-86-8585-01 2 89326822 89326822 G T IGKV3-11 Missense_Mutation p.P64H 0.21 deleterious(0) probably_damaging(1) TCGA-86-8585-01 2 89326832 89326832 C A IGKV3-11 Missense_Mutation p.G61C 0.18 deleterious(0) probably_damaging(0.995) TCGA-86-8585-01 2 90193296 90193296 A C IGKV1D-13 Missense_Mutation p.S75R 0.14 tolerated(0.16) benign(0.007) TCGA-86-8585-01 2 90458616 90458616 C A CH17-132F21.1 Missense_Mutation p.L98M 0.03 TCGA-86-8585-01 3 107492114 107492114 A T BBX Missense_Mutation p.S516C 0.29 deleterious(0.01) possibly_damaging(0.653) TCGA-86-8585-01 3 107492115 107492115 G A BBX Missense_Mutation p.S516N 0.28 tolerated(0.63) benign(0.003) TCGA-86-8585-01 3 121414266 121414266 C T GOLGB1 Missense_Mutation p.D1702N 0.13 possibly_damaging(0.627) TCGA-86-8585-01 3 126260829 126260829 C A CHST13 Missense_Mutation p.A145E 0.60 tolerated(0.33) benign(0.048) TCGA-86-8585-01 3 126261334 126261334 C T CHST13 Silent p.P313P 0.46 TCGA-86-8585-01 3 132047113 132047113 G A ACPP Silent p.V41V 0.28 TCGA-86-8585-01 3 137742522 137742522 C A CLDN18 Silent p.A81A 0.26 TCGA-86-8585-01 3 140167392 140167392 C T CLSTN2 Silent p.G273G 0.05 TCGA-86-8585-01 3 171404573 171404573 T C PLD1 Missense_Mutation p.Y590C 0.26 tolerated(0.18) benign(0) TCGA-86-8585-01 3 172165808 172165808 G T GHSR Silent p.L132L 0.26 TCGA-86-8585-01 3 17349547 17349547 C G TBC1D5 Missense_Mutation p.G359R 0.27 tolerated(0.09) probably_damaging(0.939) TCGA-86-8585-01 3 180324150 180324150 C T TTC14 Missense_Mutation p.R347C 0.28 deleterious(0) probably_damaging(1) TCGA-86-8585-01 3 183774069 183774069 G T HTR3C Silent p.V128V 0.36 TCGA-86-8585-01 3 19492850 19492850 G C KCNH8 Silent p.S593S 0.23 TCGA-86-8585-01 3 30875724 30875724 A C GADL1 Missense_Mutation p.L318R 0.33 deleterious(0) probably_damaging(1) TCGA-86-8585-01 3 37459031 37459031 G - C3orf35 Intron 0.17 TCGA-86-8585-01 3 42750365 42750365 G A CCDC13 3'UTR 0.48 TCGA-86-8585-01 3 44894219 44894219 G C KIF15 Missense_Mutation p.E1387Q 0.14 deleterious_low_confidence(0.02) benign(0.287) TCGA-86-8585-01 3 48612806 48612806 C A COL7A1 Missense_Mutation p.G2049V 0.33 unknown(0) TCGA-86-8585-01 3 58120357 58120357 A G FLNB Missense_Mutation p.K1541R 0.26 tolerated(0.32) benign(0.02) TCGA-86-8585-01 3 98188970 98188970 T C OR5K1 Silent p.L184L 0.25 TCGA-86-8585-01 4 102117079 102117079 C A PPP3CA Missense_Mutation p.V85F 0.24 deleterious(0.01) possibly_damaging(0.884) TCGA-86-8585-01 4 115998216 115998216 C A NDST4 5'UTR 0.16 TCGA-86-8585-01 4 123151364 123151364 G C KIAA1109 Missense_Mutation p.K1107N 0.10 possibly_damaging(0.826) TCGA-86-8585-01 4 123171516 123171516 G C KIAA1109 Splice_Site p.X1904_splice 0.27 TCGA-86-8585-01 4 126369627 126369627 T A FAT4 Missense_Mutation p.F2486I 0.23 probably_damaging(0.987) TCGA-86-8585-01 4 126397365 126397365 G C FAT4 Missense_Mutation p.E4083Q 0.06 benign(0.377) TCGA-86-8585-01 4 134071408 134071408 C G PCDH10 Missense_Mutation p.A38G 0.25 deleterious(0.05) probably_damaging(0.998) TCGA-86-8585-01 4 141484334 141484334 G C UCP1 Missense_Mutation p.I186M 0.26 deleterious(0) probably_damaging(0.922) TCGA-86-8585-01 4 153896715 153896715 G T FHDC1 Missense_Mutation p.G758C 0.16 tolerated(0.22) possibly_damaging(0.784) TCGA-86-8585-01 4 159133846 159133851 CTTTGG - TMEM144 In_Frame_Del p.F10_G11del 0.22 TCGA-86-8585-01 4 159747070 159747070 G T FNIP2 Missense_Mutation p.W37L 0.22 deleterious(0) probably_damaging(1) TCGA-86-8585-01 4 160253823 160253823 C T RAPGEF2 Silent p.I542I 0.12 TCGA-86-8585-01 4 169336611 169336611 T A DDX60L Missense_Mutation p.D976V 0.23 deleterious(0.02) benign(0.397) TCGA-86-8585-01 4 177041116 177041116 G C WDR17 Missense_Mutation p.D160H 0.09 deleterious(0.03) possibly_damaging(0.603) TCGA-86-8585-01 4 177142309 177142309 C A ASB5 Missense_Mutation p.A223S 0.12 tolerated(0.88) benign(0.007) TCGA-86-8585-01 4 1816294 1816294 C G LETM1 Missense_Mutation p.E693Q 0.11 deleterious(0) possibly_damaging(0.873) TCGA-86-8585-01 4 1827358 1827358 G A LETM1 Missense_Mutation p.A378V 0.29 deleterious(0.02) probably_damaging(1) TCGA-86-8585-01 4 183609422 183609422 C - TENM3 Frame_Shift_Del p.R715Afs*61 0.09 TCGA-86-8585-01 4 188923955 188923955 G T ZFP42 5'UTR 0.08 TCGA-86-8585-01 4 36130358 36130358 C G ARAP2 Missense_Mutation p.C1146S 0.23 tolerated(0.56) benign(0.002) TCGA-86-8585-01 4 40438614 40438614 C A RBM47 Missense_Mutation p.G392W 0.28 deleterious(0) probably_damaging(1) TCGA-86-8585-01 4 47939580 47939580 T A CNGA1 Missense_Mutation p.I380F 0.22 tolerated(0.13) probably_damaging(0.953) TCGA-86-8585-01 4 53468111 53468111 G C USP46 Missense_Mutation p.L278V 0.14 tolerated(0.06) benign(0.285) TCGA-86-8585-01 4 57366814 57366814 G C SRP72 Missense_Mutation p.Q597H 0.10 tolerated(0.11) possibly_damaging(0.615) TCGA-86-8585-01 4 57889646 57889646 A T POLR2B Missense_Mutation p.K889M 0.33 deleterious(0) probably_damaging(1) TCGA-86-8585-01 4 66286284 66286284 C G EPHA5 Splice_Site p.X468_splice 0.24 TCGA-86-8585-01 4 71024382 71024382 C T C4orf40 Missense_Mutation p.P138L 0.31 tolerated(0.12) unknown(0) TCGA-86-8585-01 4 74606303 74606303 G T IL8 5'UTR 0.26 TCGA-86-8585-01 4 76797787 76797787 C A PPEF2 Nonsense_Mutation p.E325* 0.17 TCGA-86-8585-01 4 85654535 85654535 C A WDFY3 Silent p.A2407A 0.24 TCGA-86-8585-01 4 864613 864613 T C GAK Missense_Mutation p.R712G 0.19 deleterious(0.03) benign(0.03) TCGA-86-8585-01 4 89034607 89034607 C A ABCG2 Nonsense_Mutation p.E348* 0.30 TCGA-86-8585-01 4 94750849 94750849 C A ATOH1 Missense_Mutation p.Q258K 0.36 tolerated(0.76) benign(0.002) TCGA-86-8585-01 5 110456699 110456699 G C WDR36 Missense_Mutation p.E726Q 0.32 tolerated(0.08) possibly_damaging(0.742) TCGA-86-8585-01 5 122152644 122152644 G A SNX2 Missense_Mutation p.G278E 0.10 deleterious(0) benign(0.054) TCGA-86-8585-01 5 134678996 134678996 C T H2AFY Missense_Mutation p.D303N 0.15 deleterious(0.01) benign(0.341) TCGA-86-8585-01 5 137071422 137071422 A G KLHL3 5'UTR 0.24 TCGA-86-8585-01 5 13922276 13922276 C A DNAH5 Missense_Mutation p.L200F 0.14 possibly_damaging(0.587) TCGA-86-8585-01 5 140537744 140537744 G T PCDHB17 3'UTR 0.25 TCGA-86-8585-01 5 145838696 145838696 C T TCERG1 Nonsense_Mutation p.Q230* 0.08 TCGA-86-8585-01 5 151668 151668 T A PLEKHG4B Missense_Mutation p.V293E 0.17 deleterious(0) possibly_damaging(0.634) TCGA-86-8585-01 5 154395374 154395374 G T KIF4B Missense_Mutation p.R652L 0.23 deleterious(0) possibly_damaging(0.738) TCGA-86-8585-01 5 176885262 176885262 C T DBN1 Missense_Mutation p.E527K 0.36 tolerated(0.46) benign(0.005) TCGA-86-8585-01 5 24491799 24491800 CA - CDH10 Frame_Shift_Del p.A588Lfs*2 0.20 TCGA-86-8585-01 5 24493035 24493035 C A CDH10 Splice_Site p.X506_splice 0.17 TCGA-86-8585-01 5 2748603 2748603 G T IRX2 Missense_Mutation p.L407I 0.13 tolerated(1) benign(0.007) TCGA-86-8585-01 5 31472304 31472304 G C DROSHA Missense_Mutation p.L703V 0.04 deleterious(0.02) benign(0.405) TCGA-86-8585-01 5 31799355 31799355 C A PDZD2 5'UTR 0.15 TCGA-86-8585-01 5 33576453 33576453 G C ADAMTS12 Silent p.P1226P 0.15 TCGA-86-8585-01 5 33576930 33576930 C T ADAMTS12 Nonsense_Mutation p.W1067* 0.12 TCGA-86-8585-01 5 34005891 34005891 C A AMACR Missense_Mutation p.G121C 0.29 deleterious(0) probably_damaging(1) TCGA-86-8585-01 5 34043085 34043085 C A C1QTNF3 Missense_Mutation p.R49L 0.34 deleterious_low_confidence(0.02) benign(0.062) TCGA-86-8585-01 5 35035347 35035347 G T AGXT2 Missense_Mutation p.N187K 0.12 tolerated(0.08) benign(0.133) TCGA-86-8585-01 5 434591 434591 G T AHRR Missense_Mutation p.R601L 0.33 tolerated(0.21) benign(0.078) TCGA-86-8585-01 5 44310633 44310633 C T FGF10 Splice_Site p.X109_splice 0.30 TCGA-86-8585-01 5 45353210 45353210 G C HCN1 Missense_Mutation p.L457V 0.13 deleterious(0) possibly_damaging(0.894) TCGA-86-8585-01 5 479949 479949 A G SLC9A3 Splice_Site p.X549_splice 0.37 TCGA-86-8585-01 5 5462382 5462382 G T KIAA0947 Nonsense_Mutation p.G979* 0.11 TCGA-86-8585-01 5 644507 644507 G C CEP72 Missense_Mutation p.D545H 0.11 deleterious(0.03) probably_damaging(0.94) TCGA-86-8585-01 5 64907537 64907537 G C TRIM23 Missense_Mutation p.Q180E 0.06 tolerated(0.33) benign(0.015) TCGA-86-8585-01 5 88018312 88018312 T C MEF2C 3'UTR 0.25 TCGA-86-8585-01 5 90074414 90074414 A C GPR98 Silent p.S4279S 0.12 TCGA-86-8585-01 5 94353082 94353082 C G MCTP1 Missense_Mutation p.R276P 0.30 deleterious(0) probably_damaging(0.974) TCGA-86-8585-01 6 100061079 100061079 C A PRDM13 Missense_Mutation p.L190I 0.26 tolerated(0.29) benign(0.02) TCGA-86-8585-01 6 106756347 106756347 C A ATG5 Missense_Mutation p.S43I 0.50 deleterious(0.01) possibly_damaging(0.758) TCGA-86-8585-01 6 107391830 107391830 C G BEND3 Missense_Mutation p.D189H 0.57 deleterious_low_confidence(0.01) possibly_damaging(0.738) TCGA-86-8585-01 6 10894153 10894153 A T SYCP2L Missense_Mutation p.K44N 0.21 tolerated(0.2) benign(0.14) TCGA-86-8585-01 6 112457441 112457441 G A LAMA4 Silent p.L1100L 0.14 TCGA-86-8585-01 6 118635412 118635412 C T SLC35F1 Silent p.A408A 0.43 TCGA-86-8585-01 6 123377059 123377059 G T CLVS2 Missense_Mutation p.A262S 0.32 tolerated(0.27) possibly_damaging(0.652) TCGA-86-8585-01 6 127804089 127804089 G A SOGA3 Missense_Mutation p.S509F 0.11 deleterious(0) possibly_damaging(0.682) TCGA-86-8585-01 6 129486812 129486812 C A LAMA2 Missense_Mutation p.A433D 0.40 deleterious(0.01) possibly_damaging(0.892) TCGA-86-8585-01 6 129777539 129777539 T A LAMA2 Missense_Mutation p.V2256E 0.22 deleterious(0.05) possibly_damaging(0.742) TCGA-86-8585-01 6 129837585 129837586 - A LAMA2 3'UTR 0.50 TCGA-86-8585-01 6 129901277 129901277 C A ARHGAP18 Splice_Site p.X613_splice 0.28 TCGA-86-8585-01 6 132859493 132859493 G A TAAR9 Missense_Mutation p.C22Y 0.27 deleterious(0.02) benign(0.015) TCGA-86-8585-01 6 133005574 133005574 G T VNN1 Missense_Mutation p.T420N 0.16 deleterious(0.04) probably_damaging(0.999) TCGA-86-8585-01 6 139609663 139609663 G T TXLNB Missense_Mutation p.P125H 0.29 deleterious(0.01) possibly_damaging(0.832) TCGA-86-8585-01 6 152332874 152332874 C A ESR1 Missense_Mutation p.R394S 0.17 deleterious(0) probably_damaging(1) TCGA-86-8585-01 6 152651200 152651200 C T SYNE1 Missense_Mutation p.E4874K 0.28 benign(0.021) TCGA-86-8585-01 6 152652518 152652518 C T SYNE1 Silent p.V4434V 0.22 TCGA-86-8585-01 6 152652537 152652537 G C SYNE1 Missense_Mutation p.S4428C 0.25 benign(0.002) TCGA-86-8585-01 6 152711483 152711483 A G SYNE1 Silent p.I2703I 0.27 TCGA-86-8585-01 6 161653260 161653260 C A AGPAT4 5'UTR 0.17 TCGA-86-8585-01 6 16328141 16328141 T A ATXN1 Missense_Mutation p.Q134L 0.25 tolerated_low_confidence(0.09) possibly_damaging(0.529) TCGA-86-8585-01 6 168352280 168352280 C T MLLT4 Missense_Mutation p.R1409W 0.26 deleterious_low_confidence(0.01) benign(0.071) TCGA-86-8585-01 6 24564550 24564550 C A KIAA0319 Missense_Mutation p.D771Y 0.24 deleterious(0.02) possibly_damaging(0.521) TCGA-86-8585-01 6 25868628 25868628 C T SLC17A3 5'UTR 0.28 TCGA-86-8585-01 6 29455418 29455418 A T MAS1L Missense_Mutation p.C88S 0.30 tolerated(0.07) benign(0.204) TCGA-86-8585-01 6 30893361 30893361 C T VARS2 Silent p.F972F 0.16 TCGA-86-8585-01 6 32065696 32065696 G A TNXB Missense_Mutation p.P94S 0.40 probably_damaging(0.986) TCGA-86-8585-01 6 3225789 3225789 C G TUBB2B Silent p.T178T 0.22 TCGA-86-8585-01 6 51613089 51613089 G T PKHD1 Missense_Mutation p.H3109N 0.29 tolerated(0.06) benign(0.018) TCGA-86-8585-01 6 55128533 55128533 C T HCRTR2 Silent p.I225I 0.10 TCGA-86-8585-01 6 70034769 70034769 C G BAI3 Missense_Mutation p.I940M 0.28 tolerated(0.06) possibly_damaging(0.715) TCGA-86-8585-01 6 7559561 7559561 G C DSP Missense_Mutation p.Q175H 0.12 probably_damaging(0.991) TCGA-86-8585-01 6 76527260 76527260 C G MYO6 5'UTR 0.05 TCGA-86-8585-01 6 80626241 80626241 C G ELOVL4 3'UTR 0.20 TCGA-86-8585-01 6 96997381 96997381 G T UFL1 Missense_Mutation p.K538N 0.13 tolerated(0.12) possibly_damaging(0.889) TCGA-86-8585-01 6 97587138 97587138 C A KLHL32 Missense_Mutation p.H615N 0.12 tolerated_low_confidence(0.05) probably_damaging(0.985) TCGA-86-8585-01 7 100349986 100349986 C T ZAN Missense_Mutation p.T753I 0.10 benign(0.001) TCGA-86-8585-01 7 100677059 100677059 C A MUC17 Missense_Mutation p.P788T 0.24 unknown(0) TCGA-86-8585-01 7 103180687 103180687 G T RELN Missense_Mutation p.P2296Q 0.10 tolerated(0.05) probably_damaging(1) TCGA-86-8585-01 7 116918127 116918127 G T WNT2 3'UTR 0.14 TCGA-86-8585-01 7 121944206 121944207 - C FEZF1 Frame_Shift_Ins p.R96Afs*72 0.28 TCGA-86-8585-01 7 121944208 121944208 G T FEZF1 Missense_Mutation p.P95Q 0.30 tolerated(0.31) benign(0.003) TCGA-86-8585-01 7 121944209 121944209 G T FEZF1 Missense_Mutation p.P95T 0.29 tolerated(0.4) benign(0.002) TCGA-86-8585-01 7 127255149 127255149 C A PAX4 Missense_Mutation p.V41L 0.17 deleterious(0) probably_damaging(0.996) TCGA-86-8585-01 7 136700135 136700135 G T CHRM2 Nonsense_Mutation p.E175* 0.10 TCGA-86-8585-01 7 141490683 141490683 T A TAS2R5 Missense_Mutation p.N174K 0.11 deleterious(0.05) possibly_damaging(0.67) TCGA-86-8585-01 7 142124526 142124526 G T TRBV6-8 Missense_Mutation p.L14M 0.11 deleterious(0) probably_damaging(0.991) TCGA-86-8585-01 7 144015727 144015727 T A OR2A1 Silent p.P170P 0.15 TCGA-86-8585-01 7 144096867 144096867 A T NOBOX Silent p.P379P 0.11 TCGA-86-8585-01 7 148287993 148287993 A G C7orf33 5'UTR 0.12 TCGA-86-8585-01 7 151847985 151847985 C A KMT2C Missense_Mutation p.K4258N 0.25 probably_damaging(0.998) TCGA-86-8585-01 7 157475567 157475567 C A PTPRN2 Silent p.A617A 0.17 TCGA-86-8585-01 7 21775318 21775318 G C DNAH11 Missense_Mutation p.E2508Q 0.16 benign(0.081) TCGA-86-8585-01 7 30693069 30693069 C T CRHR2 3'UTR 0.14 TCGA-86-8585-01 7 34971135 34971135 T C DPY19L1 3'UTR 0.15 TCGA-86-8585-01 7 37953858 37953858 C T SFRP4 Silent p.V183V 0.26 TCGA-86-8585-01 7 41729878 41729878 G T INHBA Silent p.T217T 0.05 TCGA-86-8585-01 7 42005869 42005869 C A GLI3 Silent p.A934A 0.24 TCGA-86-8585-01 7 50070744 50070744 T C ZPBP Missense_Mutation p.H217R 0.23 deleterious(0) probably_damaging(0.999) TCGA-86-8585-01 7 50660517 50660517 T C GRB10 3'UTR 0.15 TCGA-86-8585-01 7 51204028 51204028 C A COBL Missense_Mutation p.G262C 0.15 deleterious(0) probably_damaging(1) TCGA-86-8585-01 7 64168066 64168066 C G ZNF107 Missense_Mutation p.H462D 0.24 deleterious(0) probably_damaging(0.989) TCGA-86-8585-01 7 64168253 64168253 A T ZNF107 Missense_Mutation p.N524I 0.26 deleterious(0) benign(0) TCGA-86-8585-01 7 66418315 66418315 A G TMEM248 Missense_Mutation p.S295G 0.26 tolerated(0.55) benign(0.001) TCGA-86-8585-01 7 71275423 71275423 A T CALN1 Missense_Mutation p.F186I 0.26 deleterious(0.02) probably_damaging(0.985) TCGA-86-8585-01 7 72643686 72643686 G C NCF1B RNA 0.15 TCGA-86-8585-01 7 72985578 72985578 G A TBL2 Silent p.F273F 0.16 TCGA-86-8585-01 7 75693728 75693728 G T MDH2 Silent p.T235T 0.30 TCGA-86-8585-01 7 81637039 81637039 C A CACNA2D1 Missense_Mutation p.V466F 0.22 deleterious(0) probably_damaging(0.999) TCGA-86-8585-01 7 82545792 82545792 C T PCLO Missense_Mutation p.S3837N 0.24 unknown(0) TCGA-86-8585-01 7 82581574 82581574 C G PCLO Missense_Mutation p.D2899H 0.21 unknown(0) TCGA-86-8585-01 7 87179355 87179355 G T ABCB1 Missense_Mutation p.Q456K 0.20 tolerated(0.28) benign(0.008) TCGA-86-8585-01 7 8790941 8790941 G T NXPH1 Nonsense_Mutation p.G120* 0.11 TCGA-86-8585-01 7 88963714 88963714 A C ZNF804B Missense_Mutation p.Y473S 0.30 deleterious(0) probably_damaging(0.999) TCGA-86-8585-01 7 91761088 91761088 C G CYP51A1 Missense_Mutation p.K97N 0.14 deleterious(0) probably_damaging(0.975) TCGA-86-8585-01 7 93101689 93101689 T A CALCR Nonsense_Mutation p.K161* 0.18 TCGA-86-8585-01 7 95115357 95115357 T A ASB4 Missense_Mutation p.L25Q 0.06 deleterious(0) possibly_damaging(0.861) TCGA-86-8585-01 7 99621526 99621526 G C ZKSCAN1 Missense_Mutation p.D133H 0.11 deleterious(0.05) probably_damaging(0.999) TCGA-86-8585-01 8 103311753 103311753 C A UBR5 Silent p.L1043L 0.35 TCGA-86-8585-01 8 103358466 103358466 C T UBR5 Missense_Mutation p.G245E 0.08 deleterious(0.01) probably_damaging(0.994) TCGA-86-8585-01 8 104427539 104427539 G T DCAF13 Missense_Mutation p.E107D 0.09 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-86-8585-01 8 10468728 10468728 C A RP1L1 Missense_Mutation p.W960C 0.34 probably_damaging(0.953) TCGA-86-8585-01 8 107782205 107782205 G T ABRA Missense_Mutation p.H72N 0.19 tolerated(0.49) benign(0.05) TCGA-86-8585-01 8 110308672 110308672 C A NUDCD1 Nonsense_Mutation p.G134* 0.10 TCGA-86-8585-01 8 113267557 113267557 A T CSMD3 Missense_Mutation p.F3321Y 0.05 tolerated(0.9) benign(0.004) TCGA-86-8585-01 8 113326794 113326794 G T CSMD3 Missense_Mutation p.S2471R 0.10 deleterious(0) probably_damaging(1) TCGA-86-8585-01 8 116430642 116430642 C G TRPS1 Silent p.L913L 0.08 TCGA-86-8585-01 8 121180455 121180455 A C COL14A1 Missense_Mutation p.R135S 0.09 tolerated(0.21) benign(0.021) TCGA-86-8585-01 8 131862023 131862023 G C ADCY8 Missense_Mutation p.S746C 0.22 tolerated(0.18) benign(0.004) TCGA-86-8585-01 8 139180142 139180142 C T FAM135B Silent p.A418A 0.18 TCGA-86-8585-01 8 139180143 139180143 G C FAM135B Missense_Mutation p.A418G 0.18 tolerated(0.43) benign(0.003) TCGA-86-8585-01 8 139190875 139190875 G A FAM135B Missense_Mutation p.T311M 0.12 deleterious(0) benign(0.238) TCGA-86-8585-01 8 139611051 139611053 CTG TT COL22A1 Frame_Shift_Del p.T1425Kfs*3 0.11 TCGA-86-8585-01 8 140631312 140631312 G A KCNK9 Missense_Mutation p.A105V 0.16 deleterious(0.01) possibly_damaging(0.871) TCGA-86-8585-01 8 145649245 145649245 C A VPS28 3'UTR 0.19 TCGA-86-8585-01 8 145948227 145948227 G C ZNF251 Missense_Mutation p.T273S 0.15 tolerated(0.36) possibly_damaging(0.621) TCGA-86-8585-01 8 17796407 17796407 A T PCM1 Silent p.G167G 0.31 TCGA-86-8585-01 8 17922036 17922036 C A ASAH1 Missense_Mutation p.E145D 0.48 tolerated(0.1) benign(0.331) TCGA-86-8585-01 8 30706011 30706011 C A TEX15 Nonsense_Mutation p.E175* 0.21 TCGA-86-8585-01 8 3087683 3087683 C T CSMD1 Silent p.E1408E 0.28 TCGA-86-8585-01 8 41800218 41800218 T G KAT6A Intron 0.27 TCGA-86-8585-01 8 42692978 42692978 T A THAP1 3'UTR 0.21 TCGA-86-8585-01 8 42939891 42939891 T C FNTA Missense_Mutation p.L295P 0.11 deleterious(0) probably_damaging(0.987) TCGA-86-8585-01 8 48826496 48826496 C G PRKDC Missense_Mutation p.E916Q 0.21 probably_damaging(0.988) TCGA-86-8585-01 8 56435952 56435952 C G XKR4 Missense_Mutation p.I373M 0.22 tolerated(0.1) possibly_damaging(0.714) TCGA-86-8585-01 8 61766020 61766020 G T CHD7 Nonsense_Mutation p.E2246* 0.13 TCGA-86-8585-01 8 6385113 6385113 G T ANGPT2 Missense_Mutation p.Q177K 0.31 deleterious(0) probably_damaging(0.993) TCGA-86-8585-01 8 70667853 70667853 G A SLCO5A1 Missense_Mutation p.A355V 0.16 deleterious(0.01) possibly_damaging(0.667) TCGA-86-8585-01 8 72969994 72969994 C A TRPA1 Missense_Mutation p.A351S 0.15 tolerated(1) benign(0.165) TCGA-86-8585-01 8 77617050 77617050 A G ZFHX4 Missense_Mutation p.S243G 0.12 benign(0.294) TCGA-86-8585-01 8 82443480 82443480 A T FABP12 Missense_Mutation p.L24Q 0.15 deleterious(0.01) probably_damaging(0.936) TCGA-86-8585-01 8 87126091 87126091 C A ATP6V0D2 Missense_Mutation p.T95K 0.15 tolerated(1) benign(0.013) TCGA-86-8585-01 8 87755900 87755900 C - CNGB3 5'UTR 0.14 TCGA-86-8585-01 8 92352670 92352670 C G SLC26A7 Missense_Mutation p.S306C 0.10 deleterious(0) probably_damaging(0.922) TCGA-86-8585-01 8 92352687 92352687 G T SLC26A7 Missense_Mutation p.A312S 0.17 tolerated(0.47) probably_damaging(0.948) TCGA-86-8585-01 8 97157671 97157671 C G GDF6 Missense_Mutation p.G163A 0.15 deleterious(0) possibly_damaging(0.817) TCGA-86-8585-01 8 98288832 98288832 C A TSPYL5 Missense_Mutation p.S414I 0.43 tolerated(0.25) benign(0.062) TCGA-86-8585-01 9 103204402 103204402 G T MSANTD3 Missense_Mutation p.S61I 0.23 tolerated(0.08) possibly_damaging(0.57) TCGA-86-8585-01 9 107562255 107562255 G A ABCA1 Silent p.N1596N 0.32 TCGA-86-8585-01 9 107602759 107602759 C G ABCA1 Silent p.V285V 0.26 TCGA-86-8585-01 9 108337297 108337297 G T FKTN 5'UTR 0.24 TCGA-86-8585-01 9 116176170 116176170 G T C9orf43 Missense_Mutation p.G95C 0.24 deleterious(0) probably_damaging(0.988) TCGA-86-8585-01 9 120475402 120475402 G T TLR4 Missense_Mutation p.W332C 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-86-8585-01 9 13162778 13162778 C A MPDZ Missense_Mutation p.A1091S 0.30 tolerated(0.06) benign(0.077) TCGA-86-8585-01 9 139903002 139903002 G A ABCA2 Nonsense_Mutation p.Q2381* 0.21 TCGA-86-8585-01 9 139906804 139906804 G C ABCA2 Missense_Mutation p.H1738D 0.36 deleterious(0) probably_damaging(0.999) TCGA-86-8585-01 9 140672343 140672343 G T EHMT1 Silent p.G676G 0.27 TCGA-86-8585-01 9 21409616 21409616 C G IFNA8 Missense_Mutation p.F147L 0.29 deleterious(0) probably_damaging(1) TCGA-86-8585-01 9 21974780 21974780 A T CDKN2A Missense_Mutation p.L16Q 0.34 deleterious(0) probably_damaging(0.982) TCGA-86-8585-01 9 40774523 40774523 T C ZNF658 Missense_Mutation p.N251S 0.25 tolerated(0.56) benign(0.058) TCGA-86-8585-01 9 79320316 79320316 G T PRUNE2 Missense_Mutation p.L2292M 0.29 tolerated(0.06) probably_damaging(0.987) TCGA-86-8585-01 9 96278299 96278299 G T FAM120A Missense_Mutation p.G389V 0.16 tolerated(0.59) benign(0.01) TCGA-86-8585-01 X 101572395 101572395 G C NXF2 Missense_Mutation p.R98P 0.22 tolerated(0.06) benign(0.066) TCGA-86-8585-01 X 102332601 102332601 G T NXF3 Missense_Mutation p.L509I 0.37 deleterious(0.02) benign(0.001) TCGA-86-8585-01 X 106843908 106843908 C G FRMPD3 Missense_Mutation p.A913G 0.56 tolerated_low_confidence(0.09) benign(0.002) TCGA-86-8585-01 X 107865938 107865938 C G COL4A5 Missense_Mutation p.P934A 0.23 unknown(0) TCGA-86-8585-01 X 108628458 108628459 - A GUCY2F Frame_Shift_Ins p.G1004Wfs*34 0.30 TCGA-86-8585-01 X 115303581 115303581 C A AGTR2 Missense_Mutation p.S16R 0.38 tolerated(0.55) benign(0) TCGA-86-8585-01 X 119246802 119246802 C T RHOXF1 Missense_Mutation p.G141S 0.35 tolerated(0.1) probably_damaging(0.982) TCGA-86-8585-01 X 129518924 129518924 C T GPR119 Silent p.V166V 0.34 TCGA-86-8585-01 X 130678459 130678459 G T OR13H1 Missense_Mutation p.G138C 0.34 tolerated(0.18) possibly_damaging(0.571) TCGA-86-8585-01 X 132160165 132160165 T C USP26 Missense_Mutation p.N695S 0.43 tolerated(0.13) benign(0.406) TCGA-86-8585-01 X 139866376 139866376 C A CDR1 Missense_Mutation p.L52F 0.46 tolerated(0.29) possibly_damaging(0.765) TCGA-86-8585-01 X 140984517 140984517 G C MAGEC3 Intron 0.41 TCGA-86-8585-01 X 140995240 140995240 G T MAGEC1 Nonsense_Mutation p.E684* 0.47 TCGA-86-8585-01 X 1428406 1428407 - T CSF2RA 3'UTR 0.16 TCGA-86-8585-01 X 151092658 151092658 C T MAGEA4 Silent p.S174S 0.35 TCGA-86-8585-01 X 154299835 154299835 G C BRCC3 Silent p.A11A 0.19 TCGA-86-8585-01 X 17047646 17047646 C A REPS2 Intron 0.15 TCGA-86-8585-01 X 17742549 17742549 A G NHS Missense_Mutation p.I392M 0.45 tolerated(0.2) probably_damaging(0.996) TCGA-86-8585-01 X 21990089 21990089 G C SMS Missense_Mutation p.G82A 0.42 tolerated(0.38) benign(0.004) TCGA-86-8585-01 X 27765098 27765098 C A DCAF8L2 Missense_Mutation p.A29D 0.33 deleterious_low_confidence(0.05) benign(0.073) TCGA-86-8585-01 X 27839479 27839479 G TT MAGEB10 Frame_Shift_Ins p.R19Lfs*37 0.31 TCGA-86-8585-01 X 2945371 2945371 G C ARSH Missense_Mutation p.G352R 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-86-8585-01 X 29973523 29973523 G T IL1RAPL1 Missense_Mutation p.M559I 0.33 deleterious(0) probably_damaging(0.94) TCGA-86-8585-01 X 34962228 34962228 C A FAM47B Missense_Mutation p.P427H 0.44 deleterious(0) probably_damaging(0.919) TCGA-86-8585-01 X 37026967 37026967 G C FAM47C Missense_Mutation p.A162P 0.51 deleterious(0.01) probably_damaging(0.991) TCGA-86-8585-01 X 37027909 37027909 C G FAM47C Missense_Mutation p.P476A 0.27 deleterious(0.02) possibly_damaging(0.792) TCGA-86-8585-01 X 46918321 46918321 G C JADE3 Missense_Mutation p.E772Q 0.25 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-86-8585-01 X 47308385 47308385 G A ZNF41 Nonsense_Mutation p.Q262* 0.07 TCGA-86-8585-01 X 49955596 49955596 G T AKAP4 3'UTR 0.44 TCGA-86-8585-01 X 51637416 51637416 G A MAGED1 Missense_Mutation p.D6N 0.42 deleterious_low_confidence(0) unknown(0) TCGA-86-8585-01 X 595529 595529 C G SHOX Missense_Mutation p.Q152E 0.15 deleterious(0) benign(0.209) TCGA-86-8585-01 X 64738201 64738201 T G LAS1L Silent p.T531T 0.42 TCGA-86-8585-01 X 77244077 77244077 G C ATP7A Missense_Mutation p.E154Q 0.19 tolerated(0.16) benign(0.017) TCGA-86-8585-01 X 78618150 78618150 G C ITM2A Missense_Mutation p.C160W 0.50 deleterious(0) probably_damaging(0.995) TCGA-86-8585-01 X 80377046 80377046 C A HMGN5 Translation_Start_Site p.M1? 0.24 deleterious(0) benign(0.107) TCGA-86-8585-01 X 91873373 91873373 C T PCDH11X Missense_Mutation p.H1160Y 0.21 deleterious_low_confidence(0.04) benign(0.079) TCGA-86-8585-01 X 91873745 91873745 C A PCDH11X Missense_Mutation p.Q1284K 0.38 tolerated_low_confidence(0.1) probably_damaging(0.91) TCGA-86-8585-01 Y 22918047 22918047 G T RPS4Y2 5'Flank 0.45 TCGA-86-8585-01 Y 4968039 4968039 C A PCDH11Y Nonsense_Mutation p.S807* 0.40 TCGA-86-8585-01 Y 5605439 5605439 A T PCDH11Y Missense_Mutation p.Q1160L 0.25 deleterious_low_confidence(0.02) benign(0.167) TCGA-86-8668-01 10 95372626 95372626 G T PDE6C Missense_Mutation p.M48I 0.34 tolerated(0.26) benign(0.001) TCGA-86-8668-01 11 123753921 123753921 C T TMEM225 Missense_Mutation p.R201H 0.28 tolerated(0.12) benign(0) TCGA-86-8668-01 12 52159617 52159617 G A SCN8A Missense_Mutation p.E903K 0.44 tolerated(0.11) benign(0.297) TCGA-86-8668-01 12 57872994 57872994 G A ARHGAP9 Missense_Mutation p.R66C 0.29 deleterious(0.01) benign(0.024) TCGA-86-8668-01 14 105208279 105208279 C T ADSSL1 Silent p.G339G 0.09 TCGA-86-8668-01 16 25255331 25255331 G A ZKSCAN2 Missense_Mutation p.R586W 0.18 tolerated(0.07) benign(0.038) TCGA-86-8668-01 16 30100028 30100028 A T TBX6 Missense_Mutation p.Y252N 0.34 deleterious(0) probably_damaging(0.999) TCGA-86-8668-01 17 26982376 26982376 G A SDF2 Missense_Mutation p.R93W 0.19 deleterious(0) probably_damaging(1) TCGA-86-8668-01 17 34068232 34068232 C A RASL10B Missense_Mutation p.L174I 0.33 tolerated(0.06) probably_damaging(0.973) TCGA-86-8668-01 17 48355986 48355986 C T TMEM92 Silent p.P55P 0.07 TCGA-86-8668-01 17 77076422 77076422 G A ENGASE Silent p.L233L 0.07 TCGA-86-8668-01 19 37975908 37975908 C T ZNF570 Nonsense_Mutation p.R462* 0.15 TCGA-86-8668-01 19 38572173 38572173 A G SIPA1L3 5'UTR 0.24 TCGA-86-8668-01 19 53344965 53344965 A - ZNF468 Frame_Shift_Del p.N194Kfs*17 0.23 TCGA-86-8668-01 19 8933479 8933479 T A ZNF558 Intron 0.36 TCGA-86-8668-01 1 207286409 207286409 A - C4BPA Frame_Shift_Del p.R15Gfs*22 0.11 TCGA-86-8668-01 1 32841926 32841926 A T BSDC1 Missense_Mutation p.L382I 0.24 deleterious(0.01) probably_damaging(0.988) TCGA-86-8668-01 1 67861787 67861787 A G IL12RB2 3'UTR 0.28 TCGA-86-8668-01 21 33371620 33371620 A C HUNK 3'UTR 0.31 TCGA-86-8668-01 21 45390580 45390580 G A AGPAT3 Missense_Mutation p.R186H 0.07 deleterious(0.01) possibly_damaging(0.667) TCGA-86-8668-01 22 41244358 41244358 T A ST13 Missense_Mutation p.S62C 0.11 deleterious(0.04) benign(0.287) TCGA-86-8668-01 2 141299352 141299352 A G LRP1B Silent p.N2461N 0.21 TCGA-86-8668-01 2 18112940 18112940 T C KCNS3 Missense_Mutation p.L222P 0.07 deleterious(0) probably_damaging(0.999) TCGA-86-8668-01 2 236626256 236626256 C T AGAP1 Missense_Mutation p.T93M 0.11 deleterious(0) probably_damaging(0.998) TCGA-86-8668-01 2 5833205 5833205 T A SOX11 Missense_Mutation p.Y118N 0.22 deleterious(0) probably_damaging(0.987) TCGA-86-8668-01 2 74058069 74058069 A C STAMBP Missense_Mutation p.E29A 0.37 tolerated(0.05) possibly_damaging(0.66) TCGA-86-8668-01 3 14183248 14183248 C T TMEM43 Missense_Mutation p.P386S 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-86-8668-01 3 183700742 183700742 C A ABCC5 Silent p.L215L 0.06 TCGA-86-8668-01 3 58639410 58639410 G A FAM3D Missense_Mutation p.R38C 0.26 deleterious(0.01) probably_damaging(0.921) TCGA-86-8668-01 3 67053973 67053973 C A KBTBD8 Missense_Mutation p.D194E 0.26 tolerated(0.78) benign(0.02) TCGA-86-8668-01 4 104640521 104640521 G C TACR3 Silent p.L104L 0.33 TCGA-86-8668-01 4 39310627 39310627 C T RFC1 Missense_Mutation p.R505K 0.04 tolerated(1) benign(0.001) TCGA-86-8668-01 4 52861242 52861242 A T LRRC66 Missense_Mutation p.L649H 0.31 tolerated(0.14) benign(0.048) TCGA-86-8668-01 5 167673885 167673885 G A TENM2 Missense_Mutation p.G1981S 0.29 deleterious(0.01) possibly_damaging(0.84) TCGA-86-8668-01 5 176295217 176295217 G A UNC5A Missense_Mutation p.V127M 0.05 deleterious(0) probably_damaging(0.912) TCGA-86-8668-01 5 176518693 176518693 A C FGFR4 Missense_Mutation p.H204P 0.07 tolerated(0.08) benign(0.123) TCGA-86-8668-01 6 27216959 27216959 G A PRSS16 Missense_Mutation p.A140T 0.28 tolerated(0.12) benign(0.012) TCGA-86-8668-01 7 27148128 27148128 G T HOXA3 Nonsense_Mutation p.Y246* 0.18 TCGA-86-8668-01 7 4006999 4006999 C T SDK1 Silent p.D493D 0.15 TCGA-86-8668-01 7 44561400 44561400 T C NPC1L1 Missense_Mutation p.D955G 0.10 deleterious(0) probably_damaging(0.996) TCGA-86-8668-01 7 55259515 55259515 T G EGFR Missense_Mutation p.L858R 0.15 deleterious(0) probably_damaging(1) TCGA-86-8668-01 7 74824244 74824244 G A GATSL2 Silent p.F41F 0.15 TCGA-86-8668-01 8 56866463 56866463 A T LYN Missense_Mutation p.K237I 0.06 deleterious(0) benign(0.178) TCGA-86-8668-01 9 18721542 18721542 G T ADAMTSL1 Nonsense_Mutation p.E629* 0.04 TCGA-86-8668-01 X 110544791 110544791 T C DCX 3'UTR 0.29 TCGA-86-8668-01 X 35966468 35966468 C T CXorf22 Silent p.I185I 0.04 TCGA-86-8668-01 X 55514404 55514404 C G USP51 Missense_Mutation p.Q323H 0.29 deleterious(0.04) benign(0.099) TCGA-86-8669-01 10 1034431 1034431 C G GTPBP4 Nonsense_Mutation p.Y4* 0.21 TCGA-86-8669-01 10 124089049 124089049 G T BTBD16 Silent p.P322P 0.36 TCGA-86-8669-01 10 68138983 68138983 A T CTNNA3 Silent p.G553G 0.26 TCGA-86-8669-01 10 91144365 91144365 A G IFIT1B Missense_Mutation p.Q432R 0.29 tolerated(1) benign(0.001) TCGA-86-8669-01 10 96971761 96971761 G C C10orf129 Missense_Mutation p.M294I 0.29 deleterious(0.03) benign(0.424) TCGA-86-8669-01 10 96971762 96971762 C T C10orf129 Missense_Mutation p.P295S 0.28 deleterious(0.03) benign(0.304) TCGA-86-8669-01 11 117376377 117376377 C A DSCAML1 Silent p.V678V 0.61 TCGA-86-8669-01 11 33127179 33127179 T C CSTF3 Silent p.Q173Q 0.40 TCGA-86-8669-01 11 62562464 62562464 C A NXF1 Missense_Mutation p.R507L 0.30 deleterious(0.02) benign(0.001) TCGA-86-8669-01 12 104326111 104326111 G C HSP90B1 Missense_Mutation p.R70T 0.11 deleterious(0.03) possibly_damaging(0.811) TCGA-86-8669-01 12 45567064 45567064 C G PLEKHA8P1 RNA 0.32 TCGA-86-8669-01 12 72288604 72288604 G T TBC1D15 Missense_Mutation p.A283S 0.11 tolerated(0.59) benign(0.234) TCGA-86-8669-01 12 85449626 85449626 A G LRRIQ1 Missense_Mutation p.Q352R 0.55 tolerated(0.06) benign(0.075) TCGA-86-8669-01 12 85449856 85449856 G T LRRIQ1 Nonsense_Mutation p.E429* 0.30 TCGA-86-8669-01 12 85517978 85517978 G T LRRIQ1 Missense_Mutation p.A1230S 0.35 tolerated(0.09) benign(0.231) TCGA-86-8669-01 13 111155594 111155594 G A COL4A2 Missense_Mutation p.G1335D 0.22 probably_damaging(0.982) TCGA-86-8669-01 13 21190012 21190012 A G IFT88 Missense_Mutation p.Y407C 0.27 deleterious(0) probably_damaging(0.979) TCGA-86-8669-01 13 31713011 31713011 C A HSPH1 Silent p.R705R 0.23 TCGA-86-8669-01 13 36158125 36158125 A G NBEA Missense_Mutation p.N2376D 0.21 deleterious(0.03) benign(0.002) TCGA-86-8669-01 13 61986963 61986963 G A PCDH20 Silent p.P423P 0.38 TCGA-86-8669-01 14 105353711 105353711 T A CEP170B Missense_Mutation p.S1045R 0.38 deleterious(0.02) benign(0.015) TCGA-86-8669-01 14 107083709 107083709 C A IGHV4-59 5'UTR 0.28 TCGA-86-8669-01 14 20019889 20019889 C G POTEM Missense_Mutation p.G111A 0.08 tolerated(0.06) benign(0.049) TCGA-86-8669-01 14 20585813 20585813 C A OR4K17 Missense_Mutation p.T83N 0.10 deleterious(0.04) benign(0.004) TCGA-86-8669-01 14 21546383 21546383 A T ARHGEF40 Silent p.V694V 0.25 TCGA-86-8669-01 14 32563191 32563191 G C ARHGAP5 Missense_Mutation p.D1106H 0.18 deleterious(0) possibly_damaging(0.548) TCGA-86-8669-01 14 35497312 35497312 A T SRP54 Missense_Mutation p.N449I 0.07 deleterious(0.04) possibly_damaging(0.459) TCGA-86-8669-01 14 69262476 69262480 AATTA - ZFP36L1 5'Flank 0.49 TCGA-86-8669-01 14 74425983 74425983 T - ENTPD5 3'Flank 0.22 TCGA-86-8669-01 14 97321560 97321560 G C VRK1 Splice_Site p.X193_splice 0.33 TCGA-86-8669-01 15 24921522 24921522 G A NPAP1 Missense_Mutation p.E170K 0.41 tolerated(0.38) benign(0.004) TCGA-86-8669-01 15 41146707 41146707 T A SPINT1 Silent p.A367A 0.16 TCGA-86-8669-01 15 43730566 43730582 TTGCCTGGCTTCACAGA - TP53BP1 Frame_Shift_Del p.I1044Rfs*3 0.53 TCGA-86-8669-01 15 94943177 94943177 C G MCTP2 Missense_Mutation p.P640A 0.05 deleterious(0) probably_damaging(0.93) TCGA-86-8669-01 16 23848702 23848702 C T PRKCB Silent p.F60F 0.13 TCGA-86-8669-01 16 30732549 30732549 G C SRCAP Missense_Mutation p.R1098P 0.36 unknown(0) TCGA-86-8669-01 16 48174751 48174751 G A ABCC12 Silent p.A168A 0.06 TCGA-86-8669-01 16 68716298 68716298 G T CDH3 Missense_Mutation p.A364S 0.21 deleterious(0) probably_damaging(1) TCGA-86-8669-01 16 90124748 90124748 A T PRDM7 Silent p.A476A 0.29 TCGA-86-8669-01 17 10359195 10359195 G - MYH4 Frame_Shift_Del p.N665Tfs*2 0.30 TCGA-86-8669-01 17 10400395 10400395 C T MYH1 Silent p.E1549E 0.08 TCGA-86-8669-01 17 11568179 11568179 A G DNAH9 Silent p.P875P 0.09 TCGA-86-8669-01 17 29677299 29677299 G A NF1 Missense_Mutation p.D2474N 0.10 tolerated_low_confidence(0.07) benign(0.001) TCGA-86-8669-01 17 38926036 38926037 - A KRT26 Frame_Shift_Ins p.E314Gfs*15 0.44 TCGA-86-8669-01 17 39296369 39296369 C A KRTAP4-6 Missense_Mutation p.C124F 0.22 deleterious(0) unknown(0) TCGA-86-8669-01 17 41738630 41738630 G A MEOX1 Silent p.S91S 0.08 TCGA-86-8669-01 17 4642720 4642720 C G CXCL16 5'UTR 0.74 TCGA-86-8669-01 17 58885363 58885363 A C BCAS3 Splice_Site p.X135_splice 0.07 TCGA-86-8669-01 17 61996176 61996176 G T GH1 5'UTR 0.10 TCGA-86-8669-01 17 7721687 7721687 G A DNAH2 Missense_Mutation p.R3482H 0.45 probably_damaging(0.988) TCGA-86-8669-01 18 23724603 23724603 G A PSMA8 Silent p.V61V 0.14 TCGA-86-8669-01 18 31318686 31318686 G C ASXL3 Missense_Mutation p.E440Q 0.08 possibly_damaging(0.588) TCGA-86-8669-01 19 10249172 10249188 CGGGGAGCAAACACGTG - DNMT1 Frame_Shift_Del p.H1348Gfs*10 0.22 TCGA-86-8669-01 19 14854319 14854319 C A EMR2 Missense_Mutation p.W792C 0.15 deleterious(0.01) possibly_damaging(0.5) TCGA-86-8669-01 19 21240746 21240746 A G ZNF430 Silent p.E544E 0.15 TCGA-86-8669-01 19 35232520 35232520 A T ZNF181 Nonsense_Mutation p.K412* 0.18 TCGA-86-8669-01 19 362256 362256 A T THEG Missense_Mutation p.L362M 0.06 tolerated(0.07) benign(0.249) TCGA-86-8669-01 19 36293143 36293143 A G PRODH2 Missense_Mutation p.V459A 0.18 deleterious(0) probably_damaging(0.958) TCGA-86-8669-01 19 39100310 39100310 G T MAP4K1 Missense_Mutation p.P311H 0.26 tolerated(0.55) probably_damaging(0.999) TCGA-86-8669-01 19 42218935 42218935 T G CEACAM5 Missense_Mutation p.V157G 0.42 deleterious(0.01) probably_damaging(0.984) TCGA-86-8669-01 19 42932906 42932906 G A CXCL17 3'UTR 0.36 TCGA-86-8669-01 19 43259343 43259343 C A PSG8 Missense_Mutation p.C262F 0.18 deleterious(0.01) probably_damaging(0.992) TCGA-86-8669-01 19 51363114 51363114 T G KLK3 Intron 0.30 TCGA-86-8669-01 19 52909845 52909845 A G ZNF528 Missense_Mutation p.K74E 0.10 tolerated(0.15) possibly_damaging(0.549) TCGA-86-8669-01 19 6828653 6828653 C T VAV1 Silent p.N371N 0.06 TCGA-86-8669-01 19 8491509 8491511 CGG - MARCH2 In_Frame_Del p.R65del 0.13 TCGA-86-8669-01 19 9089747 9089747 A T MUC16 Missense_Mutation p.F690I 0.53 unknown(0) TCGA-86-8669-01 1 103385904 103385904 G T COL11A1 Missense_Mutation p.P1242Q 0.50 unknown(0) TCGA-86-8669-01 1 145498822 145498822 T C LIX1L 3'UTR 0.50 TCGA-86-8669-01 1 150280578 150280578 C G MRPS21 Missense_Mutation p.C60W 0.14 probably_damaging(0.988) TCGA-86-8669-01 1 156618629 156618629 C T BCAN Missense_Mutation p.R347C 0.44 deleterious(0) probably_damaging(0.998) TCGA-86-8669-01 1 157545490 157545490 T A FCRL4 Missense_Mutation p.K487M 0.37 deleterious(0.01) possibly_damaging(0.707) TCGA-86-8669-01 1 157804213 157804213 C T CD5L Silent p.T234T 0.26 TCGA-86-8669-01 1 15987060 15987065 AGTATT - RSC1A1 In_Frame_Del p.S233_I234del 0.12 TCGA-86-8669-01 1 162740204 162740204 C T DDR2 Missense_Mutation p.S469L 0.26 deleterious(0.04) benign(0.285) TCGA-86-8669-01 1 176863926 176863926 G A ASTN1 Silent p.D904D 0.36 TCGA-86-8669-01 1 218614687 218614687 T A TGFB2 Missense_Mutation p.S438T 0.24 tolerated(0.09) benign(0.333) TCGA-86-8669-01 1 2268207 2268207 C T MORN1 Silent p.G373G 0.31 TCGA-86-8669-01 1 234744400 234744400 C A IRF2BP2 Nonsense_Mutation p.E281* 0.56 TCGA-86-8669-01 1 44595318 44595318 G T KLF17 Silent p.T125T 0.21 TCGA-86-8669-01 1 7880257 7880257 G C PER3 Missense_Mutation p.D573H 0.16 deleterious(0) probably_damaging(0.953) TCGA-86-8669-01 20 18370471 18370471 C A DZANK1 Missense_Mutation p.G631V 0.33 deleterious(0) probably_damaging(0.992) TCGA-86-8669-01 20 30486337 30486337 C T TTLL9 Missense_Mutation p.R59C 0.26 deleterious(0.03) possibly_damaging(0.776) TCGA-86-8669-01 20 31375061 31375061 C T DNMT3B Missense_Mutation p.S153L 0.07 tolerated_low_confidence(0.1) benign(0.003) TCGA-86-8669-01 20 35064606 35064606 G T DLGAP4 Missense_Mutation p.R365L 0.17 deleterious(0) possibly_damaging(0.545) TCGA-86-8669-01 20 377234 377234 G A TRIB3 Missense_Mutation p.R326Q 0.12 tolerated(0.69) benign(0.007) TCGA-86-8669-01 20 52192862 52192862 G T ZNF217 Missense_Mutation p.A814D 0.12 deleterious(0) probably_damaging(0.915) TCGA-86-8669-01 20 62298882 62298882 G T RTEL1 Silent p.P249P 0.06 TCGA-86-8669-01 22 26091116 26091116 G T ADRBK2 Silent p.G365G 0.36 TCGA-86-8669-01 22 37966361 37966361 A T LGALS2 Missense_Mutation p.L103Q 0.13 deleterious(0) probably_damaging(0.975) TCGA-86-8669-01 2 173853501 173853501 C T RAPGEF4 Silent p.I436I 0.18 TCGA-86-8669-01 2 179444251 179444251 A G TTN Intron 0.49 TCGA-86-8669-01 2 1893093 1893093 C A MYT1L Missense_Mutation p.G812C 0.32 deleterious(0.02) possibly_damaging(0.831) TCGA-86-8669-01 2 189872832 189872832 A T COL3A1 Silent p.P1163P 0.33 TCGA-86-8669-01 2 198266713 198266713 C T SF3B1 Missense_Mutation p.G740E 0.20 deleterious(0.01) possibly_damaging(0.686) TCGA-86-8669-01 2 211512729 211512729 T C CPS1 Missense_Mutation p.V1101A 0.10 deleterious(0.02) benign(0.133) TCGA-86-8669-01 2 233272676 233272676 G A ALPPL2 Silent p.Q199Q 0.26 TCGA-86-8669-01 2 235951476 235951476 A T SH3BP4 Missense_Mutation p.E688V 0.37 deleterious(0.02) probably_damaging(0.995) TCGA-86-8669-01 2 238277227 238277227 T C COL6A3 Missense_Mutation p.T1627A 0.17 benign(0.028) TCGA-86-8669-01 2 26486306 26486306 G T HADHB Silent p.V56V 0.26 TCGA-86-8669-01 2 73651944 73651944 G T ALMS1 Missense_Mutation p.R384I 0.26 benign(0.214) TCGA-86-8669-01 2 73961682 73961682 A C TPRKB Missense_Mutation p.H5Q 0.12 tolerated(0.62) benign(0.002) TCGA-86-8669-01 2 74590199 74590199 T C DCTN1 Missense_Mutation p.K1151E 0.13 tolerated(0.09) benign(0.184) TCGA-86-8669-01 2 97527481 97527481 G A SEMA4C Missense_Mutation p.H532Y 0.15 tolerated(0.23) benign(0.173) TCGA-86-8669-01 3 113890705 113890705 G A DRD3 Silent p.F45F 0.07 TCGA-86-8669-01 3 149683838 149683838 C A PFN2 3'UTR 0.31 TCGA-86-8669-01 3 160129830 160129830 G - SMC4 Frame_Shift_Del p.L270Ffs*8 0.21 TCGA-86-8669-01 3 164786517 164786517 C A SI Missense_Mutation p.R159L 0.41 deleterious(0) benign(0.4) TCGA-86-8669-01 3 172241058 172241058 G A TNFSF10 Silent p.T39T 0.07 TCGA-86-8669-01 3 179096212 179096212 G T MFN1 Missense_Mutation p.Q471H 0.38 tolerated(0.11) possibly_damaging(0.497) TCGA-86-8669-01 3 19924092 19924092 G A EFHB Missense_Mutation p.R760W 0.42 deleterious(0) benign(0.058) TCGA-86-8669-01 3 49062560 49062560 T A IMPDH2 Silent p.T383T 0.20 TCGA-86-8669-01 3 62502316 62502316 T A CADPS Missense_Mutation p.Y799F 0.33 tolerated(0.1) benign(0.153) TCGA-86-8669-01 3 93722578 93722578 T C ARL13B Missense_Mutation p.I69T 0.37 deleterious(0) probably_damaging(0.948) TCGA-86-8669-01 4 123252502 123252502 A G KIAA1109 Silent p.A3757A 0.53 TCGA-86-8669-01 4 128608866 128608866 G T INTU Missense_Mutation p.L431F 0.48 deleterious(0) probably_damaging(0.999) TCGA-86-8669-01 4 138449668 138449668 T A PCDH18 Missense_Mutation p.S902C 0.12 deleterious(0.02) possibly_damaging(0.784) TCGA-86-8669-01 4 15964859 15964859 G A FGFBP2 5'UTR 0.31 TCGA-86-8669-01 4 167675667 167675667 C A SPOCK3 Missense_Mutation p.R311I 0.07 deleterious(0) possibly_damaging(0.811) TCGA-86-8669-01 4 167675670 167675670 T C SPOCK3 Missense_Mutation p.Q310R 0.07 tolerated(0.05) probably_damaging(0.946) TCGA-86-8669-01 4 17616277 17616277 C A MED28 5'UTR 0.34 TCGA-86-8669-01 4 177632711 177632711 C A VEGFC Missense_Mutation p.D216Y 0.58 deleterious(0) probably_damaging(0.999) TCGA-86-8669-01 4 184366803 184366803 A G CDKN2AIP Missense_Mutation p.I130V 0.30 deleterious(0.02) unknown(0) TCGA-86-8669-01 4 22390734 22390734 G A GPR125 Silent p.Y900Y 0.24 TCGA-86-8669-01 4 25005336 25005336 G A LGI2 Missense_Mutation p.L459F 0.32 tolerated(0.08) benign(0.132) TCGA-86-8669-01 5 112927692 112927692 G - YTHDC2 Splice_Site p.X1344_splice 0.35 TCGA-86-8669-01 5 132200160 132200160 G A GDF9 Silent p.S22S 0.07 TCGA-86-8669-01 5 135692644 135692644 C T TRPC7 Silent p.Q144Q 0.33 TCGA-86-8669-01 5 137781454 137781454 C T REEP2 3'UTR 0.22 TCGA-86-8669-01 5 140182652 140182652 G T PCDHA3 Missense_Mutation p.V624L 0.32 deleterious_low_confidence(0.03) possibly_damaging(0.9) TCGA-86-8669-01 5 140229771 140229771 C T PCDHA9 Missense_Mutation p.A564V 0.08 tolerated_low_confidence(0.24) benign(0) TCGA-86-8669-01 5 140250404 140250404 G A PCDHA11 Silent p.A572A 0.10 TCGA-86-8669-01 5 140480899 140480899 G T PCDHB3 Silent p.R222R 0.67 TCGA-86-8669-01 5 140503745 140503745 G A PCDHB4 Missense_Mutation p.G722D 0.23 deleterious_low_confidence(0.03) benign(0.12) TCGA-86-8669-01 5 140590930 140590930 G C PCDHB12 3'UTR 0.71 TCGA-86-8669-01 5 140605035 140605035 C T PCDHB14 Missense_Mutation p.S653L 0.23 deleterious_low_confidence(0) possibly_damaging(0.675) TCGA-86-8669-01 5 143853423 143853423 C T KCTD16 Missense_Mutation p.P345S 0.10 tolerated(0.38) benign(0.195) TCGA-86-8669-01 5 1878794 1878794 G T IRX4 Missense_Mutation p.D283E 0.60 tolerated(0.26) benign(0.005) TCGA-86-8669-01 5 58273015 58273015 T G PDE4D Intron 0.58 TCGA-86-8669-01 5 76649224 76649224 A G PDE8B Missense_Mutation p.N387S 0.70 tolerated(0.44) benign(0.118) TCGA-86-8669-01 6 116443070 116443070 G T COL10A1 Missense_Mutation p.P70H 0.31 deleterious(0.03) unknown(0) TCGA-86-8669-01 6 132022335 132022335 G A OR2A4 Silent p.D69D 0.27 TCGA-86-8669-01 6 26156697 26156697 T A HIST1H1E Missense_Mutation p.S27T 0.09 tolerated(0.18) benign(0.002) TCGA-86-8669-01 6 27799253 27799253 C G HIST1H4K Missense_Mutation p.R18P 0.16 deleterious(0) unknown(0) TCGA-86-8669-01 6 401621 401621 G A IRF4 Missense_Mutation p.V315M 0.45 deleterious(0) probably_damaging(0.949) TCGA-86-8669-01 6 49399492 49399492 C A MUT Missense_Mutation p.Q734H 0.28 tolerated_low_confidence(0.06) benign(0.176) TCGA-86-8669-01 6 49754723 49754723 G T PGK2 Missense_Mutation p.L60I 0.34 deleterious(0.01) probably_damaging(0.985) TCGA-86-8669-01 6 70040441 70040441 G A BAI3 Missense_Mutation p.G1027R 0.29 deleterious(0) probably_damaging(1) TCGA-86-8669-01 6 71665907 71665907 C T B3GAT2 Missense_Mutation p.E76K 0.16 tolerated(0.47) benign(0.006) TCGA-86-8669-01 6 73843311 73843311 G T KCNQ5 Missense_Mutation p.R491L 0.29 deleterious(0.01) benign(0.143) TCGA-86-8669-01 6 7904823 7904823 C T TXNDC5 Missense_Mutation p.V133M 0.36 deleterious(0) probably_damaging(0.973) TCGA-86-8669-01 6 90660061 90660064 GTTG - BACH2 Frame_Shift_Del p.N588Pfs*25 0.39 TCGA-86-8669-01 7 103969338 103969338 C A LHFPL3 Silent p.G37G 0.12 TCGA-86-8669-01 7 117420573 117420573 G A CTTNBP2 Silent p.Y815Y 0.17 TCGA-86-8669-01 7 120979121 120979121 C A WNT16 Missense_Mutation p.Q274K 0.24 tolerated(0.55) benign(0.016) TCGA-86-8669-01 7 142423650 142423650 C A TRBV27 Silent p.P102P 0.10 TCGA-86-8669-01 7 18705959 18705959 A T HDAC9 Missense_Mutation p.R531W 0.29 deleterious(0.01) possibly_damaging(0.729) TCGA-86-8669-01 7 37780086 37780086 G T GPR141 Missense_Mutation p.G31W 0.23 deleterious(0) probably_damaging(1) TCGA-86-8669-01 7 40027315 40027315 A C CDK13 Silent p.L443L 0.38 TCGA-86-8669-01 7 50682474 50682474 C T GRB10 Missense_Mutation p.C363Y 0.11 deleterious(0) probably_damaging(0.992) TCGA-86-8669-01 7 50771589 50771589 G A GRB10 Missense_Mutation p.T23I 0.15 tolerated_low_confidence(0.17) benign(0.007) TCGA-86-8669-01 7 65705780 65705780 G A TPST1 Missense_Mutation p.R123H 0.08 deleterious(0.03) probably_damaging(0.992) TCGA-86-8669-01 7 92733183 92733183 C A SAMD9 Missense_Mutation p.G743V 0.43 deleterious(0) probably_damaging(1) TCGA-86-8669-01 8 106815147 106815147 G T ZFPM2 Missense_Mutation p.S946I 0.28 deleterious_low_confidence(0.01) benign(0.302) TCGA-86-8669-01 8 145693759 145693759 C G KIFC2 Silent p.A286A 0.61 TCGA-86-8669-01 8 41581999 41581999 C A ANK1 Missense_Mutation p.G262V 0.42 deleterious(0) probably_damaging(1) TCGA-86-8669-01 8 57354128 57354128 A G PENK Silent p.R169R 0.24 TCGA-86-8669-01 8 72975067 72975067 G T TRPA1 Nonsense_Mutation p.C258* 0.21 TCGA-86-8669-01 8 85441638 85441638 C A RALYL Missense_Mutation p.L41I 0.30 deleterious(0) probably_damaging(0.983) TCGA-86-8669-01 9 117791723 117791723 G A TNC Missense_Mutation p.R2029C 0.25 deleterious(0) probably_damaging(1) TCGA-86-8669-01 9 22008887 22008887 C T CDKN2B Silent p.A22A 0.12 TCGA-86-8669-01 9 23705016 23705016 G A ELAVL2 Silent p.V129V 0.08 TCGA-86-8669-01 9 35661893 35661893 T C ARHGEF39 3'UTR 0.20 TCGA-86-8669-01 9 67968442 67968442 A T ANKRD20A1 Silent p.T667T 0.13 TCGA-86-8669-01 9 75543859 75543859 G A ALDH1A1 Missense_Mutation p.R131C 0.08 deleterious(0) probably_damaging(0.939) TCGA-86-8669-01 9 8499745 8499745 C A PTPRD Missense_Mutation p.G742C 0.32 deleterious(0) probably_damaging(1) TCGA-86-8669-01 9 87338593 87338593 G A NTRK2 Nonsense_Mutation p.W230* 0.32 TCGA-86-8669-01 X 101909507 101909507 T A GPRASP1 Missense_Mutation p.S222R 0.06 tolerated(0.09) benign(0.027) TCGA-86-8669-01 X 16855748 16855748 C G TXLNG Missense_Mutation p.F364L 0.24 deleterious(0.03) probably_damaging(0.923) TCGA-86-8669-01 X 54783699 54783699 G T ITIH6 Silent p.P936P 0.73 TCGA-86-8669-01 X 75004086 75004086 C A MAGEE2 Silent p.L267L 0.72 TCGA-86-8671-01 11 124310957 124310957 C T OR8B8 Missense_Mutation p.V9M 0.09 deleterious_low_confidence(0.03) benign(0.085) TCGA-86-8671-01 12 121766252 121766252 C A ANAPC5 Missense_Mutation p.A391S 0.11 tolerated(0.62) benign(0.293) TCGA-86-8671-01 12 130649197 130649197 A C FZD10 Missense_Mutation p.K570N 0.13 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-86-8671-01 12 51757967 51757967 G A GALNT6 Silent p.F329F 0.05 TCGA-86-8671-01 12 53227929 53227929 G A KRT79 Missense_Mutation p.S39F 0.05 deleterious(0.04) probably_damaging(0.996) TCGA-86-8671-01 12 56563372 56563372 C T SMARCC2 Missense_Mutation p.E855K 0.13 deleterious(0.02) benign(0.305) TCGA-86-8671-01 14 20344554 20344554 G T OR4K2 Missense_Mutation p.S43I 0.06 tolerated(0.59) benign(0.003) TCGA-86-8671-01 14 24878576 24878576 C G NYNRIN Missense_Mutation p.Q526E 0.08 deleterious_low_confidence(0.04) benign(0.002) TCGA-86-8671-01 15 25953235 25953235 T C ATP10A Silent p.E821E 0.07 TCGA-86-8671-01 16 28328790 28328790 T A SBK1 Silent p.G26G 0.09 TCGA-86-8671-01 16 72164139 72164139 A C PMFBP1 Missense_Mutation p.N585K 0.04 tolerated(0.15) possibly_damaging(0.736) TCGA-86-8671-01 17 29219774 29219774 T G ATAD5 Missense_Mutation p.S1470A 0.08 tolerated(0.54) benign(0.005) TCGA-86-8671-01 17 31099809 31099809 G C MYO1D Missense_Mutation p.Q206E 0.04 deleterious(0.02) probably_damaging(0.913) TCGA-86-8671-01 17 47390081 47390081 G A ZNF652 Missense_Mutation p.H343Y 0.09 tolerated(0.05) probably_damaging(0.99) TCGA-86-8671-01 17 47656173 47656173 C T NXPH3 Silent p.P90P 0.06 TCGA-86-8671-01 17 79892830 79892830 G A PYCR1 Missense_Mutation p.T171M 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-86-8671-01 19 12383624 12383624 C T ZNF44 Silent p.G530G 0.05 TCGA-86-8671-01 1 154573713 154573713 C T ADAR Missense_Mutation p.A469T 0.08 tolerated(0.26) benign(0.254) TCGA-86-8671-01 1 197062348 197062348 T A ASPM Missense_Mutation p.Y3043F 0.06 tolerated(0.29) benign(0.1) TCGA-86-8671-01 1 22915379 22915379 C T EPHA8 Missense_Mutation p.P332L 0.05 deleterious(0) probably_damaging(0.945) TCGA-86-8671-01 1 62739380 62739380 G C KANK4 Missense_Mutation p.Q466E 0.03 tolerated(0.48) benign(0.002) TCGA-86-8671-01 20 33665942 33665942 T C TRPC4AP Silent p.Q68Q 0.11 TCGA-86-8671-01 20 35060501 35060501 C T DLGAP4 Silent p.G127G 0.05 TCGA-86-8671-01 20 35507588 35507588 G A TLDC2 Missense_Mutation p.D112N 0.12 tolerated(0.07) possibly_damaging(0.9) TCGA-86-8671-01 20 62221963 62221963 G A GMEB2 Missense_Mutation p.R358W 0.19 deleterious(0) probably_damaging(0.999) TCGA-86-8671-01 2 125192122 125192122 G C CNTNAP5 Missense_Mutation p.L197F 0.05 tolerated(0.45) benign(0.127) TCGA-86-8671-01 2 179997121 179997121 T C SESTD1 Silent p.E294E 0.08 TCGA-86-8671-01 3 130452659 130452659 T C PIK3R4 Missense_Mutation p.K395E 0.10 deleterious(0) possibly_damaging(0.804) TCGA-86-8671-01 3 5251931 5251931 C A EDEM1 Silent p.V527V 0.07 TCGA-86-8671-01 4 89318080 89318080 C T HERC6 Missense_Mutation p.P322L 0.05 tolerated(0.16) possibly_damaging(0.717) TCGA-86-8671-01 5 140741086 140741086 G T PCDHGB2 Missense_Mutation p.A462S 0.09 tolerated(0.16) benign(0.168) TCGA-86-8671-01 5 140745114 140745114 C G PCDHGA5 Missense_Mutation p.T406R 0.04 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-86-8671-01 5 150400274 150400274 C T GPX3 Missense_Mutation p.S20L 0.09 tolerated(0.18) benign(0) TCGA-86-8671-01 5 33527406 33527406 A G ADAMTS12 Missense_Mutation p.C1558R 0.09 deleterious(0) probably_damaging(0.999) TCGA-86-8671-01 5 78915520 78915520 C T PAPD4 Nonsense_Mutation p.Q17* 0.07 TCGA-86-8671-01 5 82834632 82834632 A G VCAN Missense_Mutation p.D1937G 0.06 deleterious(0.01) possibly_damaging(0.884) TCGA-86-8671-01 7 80290448 80290448 C G CD36 Silent p.P117P 0.09 TCGA-86-8671-01 8 25325815 25325815 G A CDCA2 Silent p.Q207Q 0.06 TCGA-86-8671-01 9 34623563 34623563 G A ARID3C Missense_Mutation p.P242S 0.06 tolerated(0.06) benign(0.003) TCGA-86-8671-01 9 79974310 79974310 A G VPS13A Silent p.S2699S 0.11 TCGA-86-8671-01 X 135738526 135738526 C A CD40LG Missense_Mutation p.P120T 0.07 tolerated(0.07) benign(0.053) TCGA-86-8671-01 X 14863145 14863145 A G FANCB Missense_Mutation p.L587P 0.10 deleterious(0) probably_damaging(1) TCGA-86-8671-01 X 15376203 15376203 G A FIGF Silent p.N138N 0.03 TCGA-86-8671-01 X 18923881 18923881 C A PHKA2 Missense_Mutation p.R968I 0.08 deleterious(0) benign(0.25) TCGA-86-8671-01 X 37027929 37027929 C T FAM47C Silent p.D482D 0.08 TCGA-86-8671-01 X 79989634 79989634 C A BRWD3 Nonsense_Mutation p.E357* 0.08 TCGA-86-8671-01 X 96139561 96139561 G C RPA4 Missense_Mutation p.E84D 0.07 deleterious(0.04) benign(0.027) TCGA-86-8672-01 10 101648681 101648681 A G DNMBP Silent p.A1062A 0.23 TCGA-86-8672-01 10 102584473 102584473 T G PAX2 Missense_Mutation p.Y353D 0.11 deleterious(0) probably_damaging(0.949) TCGA-86-8672-01 10 106917004 106917004 G T SORCS3 Missense_Mutation p.D531Y 0.10 deleterious(0) possibly_damaging(0.458) TCGA-86-8672-01 10 115536884 115536884 G T PLEKHS1 Missense_Mutation p.V345L 0.27 deleterious(0) probably_damaging(0.999) TCGA-86-8672-01 10 118460536 118460536 T A HSPA12A Missense_Mutation p.D120V 0.21 deleterious(0) benign(0.25) TCGA-86-8672-01 10 118464767 118464767 G A HSPA12A Missense_Mutation p.S50L 0.14 tolerated_low_confidence(0.31) benign(0.003) TCGA-86-8672-01 10 118464768 118464768 A G HSPA12A Missense_Mutation p.S50P 0.14 tolerated_low_confidence(0.52) benign(0.001) TCGA-86-8672-01 10 119017345 119017345 G T SLC18A2 Silent p.L311L 0.19 TCGA-86-8672-01 10 119017346 119017346 G T SLC18A2 Nonsense_Mutation p.E312* 0.21 TCGA-86-8672-01 10 125521449 125521449 C T CPXM2 Silent p.T572T 0.17 TCGA-86-8672-01 10 126089481 126089481 G C OAT Missense_Mutation p.L363V 0.24 deleterious(0.04) benign(0.253) TCGA-86-8672-01 10 127760148 127760148 C G ADAM12 Silent p.V410V 0.24 TCGA-86-8672-01 10 15726004 15726004 G C ITGA8 Missense_Mutation p.N189K 0.22 deleterious(0) benign(0.211) TCGA-86-8672-01 10 21148756 21148756 C A NEBL Splice_Site p.X229_splice 0.42 TCGA-86-8672-01 10 37451598 37451598 C - ANKRD30A Frame_Shift_Del p.F586Sfs*18 0.22 TCGA-86-8672-01 10 38645385 38645385 G C HSD17B7P2 RNA 0.18 TCGA-86-8672-01 10 42965565 42965565 C T CCNYL2 RNA 0.09 TCGA-86-8672-01 10 47000002 47000002 G T GPRIN2 Missense_Mutation p.E374D 0.08 tolerated(0.11) possibly_damaging(0.62) TCGA-86-8672-01 10 49658571 49658571 G C ARHGAP22 Missense_Mutation p.A550G 0.42 tolerated(0.25) probably_damaging(0.934) TCGA-86-8672-01 10 50952707 50952707 G T OGDHL Missense_Mutation p.S574Y 0.19 deleterious(0) probably_damaging(0.971) TCGA-86-8672-01 10 67680292 67680292 G A CTNNA3 Silent p.A828A 0.30 TCGA-86-8672-01 10 70723050 70723050 G A DDX21 Missense_Mutation p.R204Q 0.19 tolerated(0.11) benign(0.105) TCGA-86-8672-01 10 75296188 75296188 G A USP54 Missense_Mutation p.P328L 0.09 deleterious(0) probably_damaging(1) TCGA-86-8672-01 10 78651359 78651359 G T KCNMA1 Missense_Mutation p.P1072Q 0.22 tolerated(0.1) possibly_damaging(0.896) TCGA-86-8672-01 10 8006708 8006708 G T TAF3 Missense_Mutation p.G412V 0.23 deleterious(0) probably_damaging(0.982) TCGA-86-8672-01 10 93902846 93902846 C G CPEB3 Missense_Mutation p.G465R 0.14 deleterious(0) probably_damaging(1) TCGA-86-8672-01 10 94388638 94388638 G A KIF11 Missense_Mutation p.E431K 0.12 deleterious(0) benign(0.314) TCGA-86-8672-01 10 97370050 97370050 C - ALDH18A1 Splice_Site p.X704_splice 0.18 TCGA-86-8672-01 11 103194613 103194613 G T DYNC2H1 Splice_Site p.X3986_splice 0.33 TCGA-86-8672-01 11 10789389 10789389 C A CTR9 Missense_Mutation p.H575N 0.06 deleterious(0) benign(0.087) TCGA-86-8672-01 11 111224994 111224994 C T POU2AF1 Missense_Mutation p.G255S 0.15 deleterious(0.01) probably_damaging(1) TCGA-86-8672-01 11 111957432 111957432 C T TIMM8B Missense_Mutation p.E21K 0.24 tolerated(0.49) benign(0.005) TCGA-86-8672-01 11 112087039 112087039 A T BCO2 Missense_Mutation p.I538F 0.23 deleterious(0) possibly_damaging(0.906) TCGA-86-8672-01 11 113661362 113661362 T A ATF4P4 RNA 0.24 TCGA-86-8672-01 11 123676834 123676834 A G OR6M1 Missense_Mutation p.I75T 0.22 tolerated(0.11) benign(0.002) TCGA-86-8672-01 11 124007807 124007807 G A VWA5A Missense_Mutation p.D571N 0.18 tolerated(0.1) benign(0.035) TCGA-86-8672-01 11 17428534 17428534 G C ABCC8 Silent p.L1021L 0.14 TCGA-86-8672-01 11 40137770 40137770 G T LRRC4C Missense_Mutation p.P25T 0.23 tolerated_low_confidence(0.14) benign(0.076) TCGA-86-8672-01 11 4944914 4944914 G A OR51G1 Missense_Mutation p.S219L 0.06 deleterious(0) probably_damaging(1) TCGA-86-8672-01 11 58980271 58980271 G A MPEG1 Missense_Mutation p.S23L 0.09 tolerated(0.85) benign(0) TCGA-86-8672-01 11 60702844 60702844 C T TMEM132A Missense_Mutation p.R654W 0.21 tolerated(0.19) benign(0.033) TCGA-86-8672-01 11 62394537 62394537 G C GANAB Missense_Mutation p.L791V 0.07 deleterious(0) probably_damaging(0.979) TCGA-86-8672-01 11 62744655 62744655 C T SLC22A6 Silent p.R522R 0.14 TCGA-86-8672-01 11 64009862 64009862 G A FKBP2 Translation_Start_Site p.M1? 0.05 deleterious(0.01) benign(0.023) TCGA-86-8672-01 11 64504477 64504477 C A RASGRP2 Silent p.T281T 0.07 TCGA-86-8672-01 11 6478612 6478612 C A TRIM3 Missense_Mutation p.A204S 0.39 tolerated(0.54) benign(0.01) TCGA-86-8672-01 11 65392484 65392484 C T PCNXL3 Silent p.I972I 0.12 TCGA-86-8672-01 11 65429463 65429463 C A RELA Missense_Mutation p.G44V 0.20 deleterious(0) probably_damaging(1) TCGA-86-8672-01 11 66807362 66807362 C A SYT12 Silent p.T103T 0.25 TCGA-86-8672-01 11 67788996 67789009 AGCACCTGACACCT - ALDH3B1 Frame_Shift_Del p.K201Sfs*49 0.12 TCGA-86-8672-01 11 71800178 71800178 G A LRTOMT 5'UTR 0.07 TCGA-86-8672-01 11 77064624 77064624 C A PAK1 Missense_Mutation p.D265Y 0.06 deleterious(0) probably_damaging(1) TCGA-86-8672-01 11 83544792 83544792 C G DLG2 Silent p.L529L 0.23 TCGA-86-8672-01 11 86868382 86868382 G T TMEM135 Splice_Site p.X133_splice 0.26 TCGA-86-8672-01 11 94278001 94278001 C A FUT4 Silent p.A234A 0.16 TCGA-86-8672-01 12 10978605 10978605 C A TAS2R10 Missense_Mutation p.W88C 0.13 deleterious(0) probably_damaging(0.999) TCGA-86-8672-01 12 115120784 115120784 G C TBX3 Silent p.T74T 0.33 TCGA-86-8672-01 12 12630491 12630491 T G DUSP16 Missense_Mutation p.D425A 0.27 deleterious(0.02) benign(0.004) TCGA-86-8672-01 12 132262716 132262716 G C SFSWAP Missense_Mutation p.R750T 0.12 deleterious_low_confidence(0.01) benign(0.402) TCGA-86-8672-01 12 2229539 2229539 C A CACNA1C Silent p.A140A 0.21 TCGA-86-8672-01 12 3692328 3692328 T C PRMT8 Silent p.F311F 0.35 TCGA-86-8672-01 12 52377798 52377798 C G ACVR1B Missense_Mutation p.T317R 0.45 deleterious(0) probably_damaging(0.999) TCGA-86-8672-01 12 53686094 53686094 G A ESPL1 Silent p.V1943V 0.39 TCGA-86-8672-01 12 57943921 57943921 C G KIF5A 5'UTR 0.54 TCGA-86-8672-01 12 70965784 70965784 C G PTPRB Missense_Mutation p.D976H 0.06 deleterious(0) probably_damaging(0.962) TCGA-86-8672-01 12 71029488 71029488 C T PTPRB Silent p.E138E 0.19 TCGA-86-8672-01 13 102105209 102105209 T C ITGBL1 Missense_Mutation p.F9L 0.16 tolerated_low_confidence(0.55) benign(0.041) TCGA-86-8672-01 13 103718371 103718371 C T SLC10A2 Missense_Mutation p.G77R 0.38 deleterious(0) probably_damaging(0.972) TCGA-86-8672-01 13 26112159 26112159 G T ATP8A2 Missense_Mutation p.G181W 0.13 deleterious(0) probably_damaging(0.999) TCGA-86-8672-01 13 37605931 37605932 - T SUPT20H Frame_Shift_Ins p.R270Kfs*11 0.14 TCGA-86-8672-01 13 53307474 53307474 G T LECT1 Silent p.T78T 0.24 TCGA-86-8672-01 13 53422552 53422552 C A PCDH8 Missense_Mutation p.W7L 0.20 tolerated_low_confidence(0.18) benign(0.074) TCGA-86-8672-01 13 77831824 77831824 T A MYCBP2 Missense_Mutation p.M682L 0.21 benign(0.402) TCGA-86-8672-01 13 84455665 84455665 C A SLITRK1 5'UTR 0.21 TCGA-86-8672-01 14 104251172 104251172 G T PPP1R13B Missense_Mutation p.F79L 0.12 tolerated(0.14) benign(0.23) TCGA-86-8672-01 14 105414440 105414440 C A AHNAK2 Nonsense_Mutation p.E2450* 0.14 TCGA-86-8672-01 14 106209332 106209332 C T IGHG1 Missense_Mutation p.G26D 0.24 deleterious(0.01) probably_damaging(0.97) TCGA-86-8672-01 14 20444046 20444046 C A OR4K15 Silent p.A123A 0.10 TCGA-86-8672-01 14 23548913 23548913 C A ACIN1 Missense_Mutation p.R602L 0.15 benign(0.065) TCGA-86-8672-01 14 33684585 33684585 C A NPAS3 Missense_Mutation p.P113Q 0.20 deleterious(0) possibly_damaging(0.884) TCGA-86-8672-01 14 39650547 39650547 T C PNN Missense_Mutation p.V545A 0.13 tolerated_low_confidence(0.18) benign(0.001) TCGA-86-8672-01 14 42356192 42356192 C A LRFN5 Missense_Mutation p.L122I 0.13 deleterious(0.01) probably_damaging(0.955) TCGA-86-8672-01 14 47566236 47566236 T C MDGA2 Missense_Mutation p.E339G 0.07 tolerated(0.34) possibly_damaging(0.763) TCGA-86-8672-01 14 63447667 63447667 G T KCNH5 Missense_Mutation p.L289M 0.07 deleterious(0.01) probably_damaging(0.981) TCGA-86-8672-01 14 65245930 65245930 G C SPTB Nonsense_Mutation p.S1503* 0.13 TCGA-86-8672-01 14 94417512 94417512 C G ASB2 Missense_Mutation p.G238A 0.12 deleterious(0) probably_damaging(1) TCGA-86-8672-01 14 95081327 95081327 C A SERPINA3 Nonsense_Mutation p.Y183* 0.14 TCGA-86-8672-01 14 96795024 96795024 T C ATG2B Missense_Mutation p.N654S 0.12 tolerated(0.08) benign(0.01) TCGA-86-8672-01 14 96944935 96944935 C T AK7 Silent p.I563I 0.16 TCGA-86-8672-01 14 96993796 96993796 C T PAPOLA Missense_Mutation p.P121S 0.08 deleterious(0) probably_damaging(1) TCGA-86-8672-01 15 22368991 22368991 G A OR4M2 Missense_Mutation p.R139H 0.02 tolerated(0.12) benign(0.003) TCGA-86-8672-01 15 23811206 23811206 G A MKRN3 Missense_Mutation p.G93S 0.17 tolerated(0.06) probably_damaging(0.999) TCGA-86-8672-01 15 25336846 25336846 G T SNORD116-23 5'Flank 0.25 TCGA-86-8672-01 15 40763898 40763898 G A CHST14 Nonsense_Mutation p.W162* 0.28 TCGA-86-8672-01 15 43552318 43552318 G T TGM5 Missense_Mutation p.S123Y 0.17 deleterious(0) probably_damaging(0.917) TCGA-86-8672-01 15 45656011 45656011 C T GATM Intron 0.33 TCGA-86-8672-01 15 48413259 48413259 C A SLC24A5 Silent p.G6G 0.13 TCGA-86-8672-01 15 48413260 48413260 C T SLC24A5 Nonsense_Mutation p.Q7* 0.12 TCGA-86-8672-01 15 54007541 54007541 C A WDR72 Missense_Mutation p.M121I 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-86-8672-01 15 56393597 56393597 C T RFX7 Silent p.K257K 0.16 TCGA-86-8672-01 15 57484420 57484420 C G TCF12 Missense_Mutation p.P152R 0.12 tolerated(0.25) benign(0.394) TCGA-86-8672-01 15 65871960 65871960 C T VWA9 Missense_Mutation p.G391D 0.08 deleterious(0) probably_damaging(1) TCGA-86-8672-01 15 74560766 74560766 C A CCDC33 Silent p.P171P 0.12 TCGA-86-8672-01 15 74560767 74560767 C A CCDC33 Missense_Mutation p.R172S 0.13 deleterious(0.04) benign(0.092) TCGA-86-8672-01 15 78825892 78825892 C T HYKK Silent p.L334L 0.09 TCGA-86-8672-01 16 10274038 10274038 G A GRIN2A Silent p.T77T 0.09 TCGA-86-8672-01 16 19729604 19729604 C A IQCK 5'UTR 0.57 TCGA-86-8672-01 16 2011500 2011500 A T NDUFB10 Missense_Mutation p.K91I 0.21 tolerated(0.16) benign(0.297) TCGA-86-8672-01 16 24196453 24196453 G A PRKCB Missense_Mutation p.G519R 0.29 deleterious(0) probably_damaging(0.976) TCGA-86-8672-01 16 27078618 27078618 G T C16orf82 RNA 0.27 TCGA-86-8672-01 16 34712270 34712270 G T RP11-80F22.9 RNA 0.29 TCGA-86-8672-01 16 50664741 50664741 G T NKD1 Silent p.L205L 0.38 TCGA-86-8672-01 16 58296382 58296382 C G CCDC113 Missense_Mutation p.Q241E 0.16 tolerated(0.15) benign(0.062) TCGA-86-8672-01 16 68309091 68309091 G A SLC7A6 Silent p.P154P 0.18 TCGA-86-8672-01 16 72170352 72170352 C A PMFBP1 Missense_Mutation p.D400Y 0.24 deleterious(0) probably_damaging(0.971) TCGA-86-8672-01 16 75263718 75263718 G A BCAR1 Silent p.A814A 0.31 TCGA-86-8672-01 16 82131864 82131864 C T HSD17B2 Silent p.I329I 0.09 TCGA-86-8672-01 17 11540053 11540053 G T DNAH9 Missense_Mutation p.A580S 0.08 benign(0.016) TCGA-86-8672-01 17 12647601 12647601 G A MYOCD Silent p.Q273Q 0.06 TCGA-86-8672-01 17 1520013 1520013 C A SLC43A2 Nonsense_Mutation p.E71* 0.08 TCGA-86-8672-01 17 15950304 15950304 G A NCOR1 Missense_Mutation p.R2214C 0.10 probably_damaging(0.997) TCGA-86-8672-01 17 21826370 21826370 C T FAM27L RNA 0.21 TCGA-86-8672-01 17 2234335 2234343 TGAGGAAGG GAGGAAGGT TSR1 Missense_Mutation p.NLPQ519KPSS 0.23 TCGA-86-8672-01 17 30300226 30300226 G T SUZ12 Silent p.V189V 0.12 TCGA-86-8672-01 17 33325307 33325307 G C LIG3 Missense_Mutation p.D661H 0.08 deleterious(0) probably_damaging(0.996) TCGA-86-8672-01 17 34235957 34235957 G C AC015849.16 RNA 0.22 TCGA-86-8672-01 17 35641827 35641827 C T ACACA Missense_Mutation p.R128K 0.20 tolerated_low_confidence(0.4) benign(0.006) TCGA-86-8672-01 17 42030445 42030445 G A PYY Intron 0.15 TCGA-86-8672-01 17 42476435 42476435 C A GPATCH8 Missense_Mutation p.G1004C 0.22 tolerated(0.19) unknown(0) TCGA-86-8672-01 17 43923160 43923160 C A SPPL2C Nonsense_Mutation p.C296* 0.22 TCGA-86-8672-01 17 4645685 4645685 G C ZMYND15 Missense_Mutation p.R348P 0.13 deleterious(0.02) probably_damaging(0.98) TCGA-86-8672-01 17 46629658 46629658 G T HOXB3 Missense_Mutation p.A60D 0.13 tolerated(0.55) benign(0.016) TCGA-86-8672-01 17 47236476 47236476 G A B4GALNT2 Silent p.Q252Q 0.24 TCGA-86-8672-01 17 48560018 48560018 C T RSAD1 Silent p.T285T 0.12 TCGA-86-8672-01 17 58124715 58124715 C G HEATR6 Missense_Mutation p.L908F 0.05 deleterious(0.01) possibly_damaging(0.757) TCGA-86-8672-01 17 62750591 62750591 T A hsa-mir-6080 RNA 0.15 TCGA-86-8672-01 17 64785071 64785071 A C PRKCA Missense_Mutation p.I610L 0.19 tolerated(0.11) benign(0.003) TCGA-86-8672-01 17 73824957 73824957 G A UNC13D Missense_Mutation p.P1021L 0.14 deleterious(0) possibly_damaging(0.594) TCGA-86-8672-01 17 7574006 7574007 - CTTC TP53 Frame_Shift_Ins p.F341Efs*7 0.20 TCGA-86-8672-01 17 77987338 77987338 C A TBC1D16 Silent p.L3L 0.24 TCGA-86-8672-01 17 78349667 78349667 A T RNF213 Silent p.P4394P 0.21 TCGA-86-8672-01 17 7838429 7838429 G A CNTROB Missense_Mutation p.R187K 0.22 tolerated(0.39) benign(0.014) TCGA-86-8672-01 18 42531438 42531438 G - SETBP1 Frame_Shift_Del p.K711Nfs*73 0.18 TCGA-86-8672-01 18 43529466 43529466 G T EPG5 Missense_Mutation p.A494D 0.14 deleterious(0) probably_damaging(0.991) TCGA-86-8672-01 18 54694328 54694328 G C WDR7 Missense_Mutation p.A1455P 0.17 tolerated(0.07) probably_damaging(0.998) TCGA-86-8672-01 18 57013249 57013249 T A LMAN1 Missense_Mutation p.K286I 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-86-8672-01 18 61323161 61323161 G C SERPINB3 Silent p.T301T 0.18 TCGA-86-8672-01 18 61565003 61565003 C A SERPINB2 Missense_Mutation p.Q154K 0.09 deleterious(0.03) benign(0.209) TCGA-86-8672-01 18 63477200 63477200 A G CDH7 Silent p.P157P 0.12 TCGA-86-8672-01 19 10610334 10610343 CAATGGACAC - KEAP1 Frame_Shift_Del p.V123Rfs*31 0.27 TCGA-86-8672-01 19 37117086 37117086 G C ZNF382 Missense_Mutation p.R96T 0.37 deleterious(0.03) benign(0.001) TCGA-86-8672-01 19 38987581 38987581 A G RYR1 Missense_Mutation p.Q2293R 0.38 benign(0.1) TCGA-86-8672-01 19 46375492 46375492 A G FOXA3 Missense_Mutation p.T77A 0.34 tolerated(1) unknown(0) TCGA-86-8672-01 19 51960929 51960929 C A SIGLEC8 Silent p.L173L 0.26 TCGA-86-8672-01 19 56203203 56203203 G T EPN1 Missense_Mutation p.M368I 0.24 tolerated(0.22) benign(0.001) TCGA-86-8672-01 19 58420461 58420461 G T ZNF417 Silent p.L395L 0.30 TCGA-86-8672-01 19 58511176 58511176 C T ZNF606 Silent p.Q59Q 0.21 TCGA-86-8672-01 19 8550728 8550728 G T HNRNPM Missense_Mutation p.M472I 0.28 tolerated_low_confidence(0.08) benign(0.002) TCGA-86-8672-01 1 11159930 11159930 C A EXOSC10 5'UTR 0.28 TCGA-86-8672-01 1 115226819 115226819 C A AMPD1 Splice_Site p.X216_splice 0.17 TCGA-86-8672-01 1 117297263 117297264 - A CD2 Frame_Shift_Ins p.E26Rfs*22 0.12 TCGA-86-8672-01 1 117311203 117311203 C T CD2 Missense_Mutation p.P285L 0.15 deleterious(0.03) possibly_damaging(0.875) TCGA-86-8672-01 1 1414431 1414431 G T ATAD3B Missense_Mutation p.R129S 0.38 deleterious(0) probably_damaging(0.987) TCGA-86-8672-01 1 146639354 146639354 C T PRKAB2 Silent p.L105L 0.07 TCGA-86-8672-01 1 147955294 147955294 C A PPIAL4A Missense_Mutation p.L17F 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.883) TCGA-86-8672-01 1 152193938 152193938 A C HRNR Missense_Mutation p.I56S 0.15 probably_damaging(0.956) TCGA-86-8672-01 1 152382456 152382456 G C CRNN Missense_Mutation p.H368D 0.28 tolerated(0.07) benign(0.01) TCGA-86-8672-01 1 157765833 157765833 C G FCRL1 3'UTR 0.14 TCGA-86-8672-01 1 158151988 158151988 G T CD1D Silent p.V165V 0.28 TCGA-86-8672-01 1 158735858 158735858 G T OR6N1 Nonsense_Mutation p.C205* 0.22 TCGA-86-8672-01 1 159799730 159799730 C G SLAMF8 Missense_Mutation p.R39G 0.14 tolerated(0.35) benign(0.001) TCGA-86-8672-01 1 169581470 169581470 C A SELP Missense_Mutation p.A316S 0.15 tolerated(0.21) benign(0.127) TCGA-86-8672-01 1 175046741 175046741 C A TNN Missense_Mutation p.Q63K 0.20 tolerated(0.24) benign(0.003) TCGA-86-8672-01 1 190067590 190067590 G A BRINP3 Missense_Mutation p.T620I 0.13 deleterious(0) possibly_damaging(0.598) TCGA-86-8672-01 1 193038728 193038728 C T TROVE2 Silent p.L182L 0.04 TCGA-86-8672-01 1 203696697 203696697 C G ATP2B4 Missense_Mutation p.Q1103E 0.28 deleterious(0) probably_damaging(0.992) TCGA-86-8672-01 1 204401488 204401488 T C PIK3C2B Missense_Mutation p.N1332S 0.06 deleterious(0) possibly_damaging(0.683) TCGA-86-8672-01 1 206623810 206623810 G A SRGAP2 Missense_Mutation p.E641K 0.12 deleterious(0.02) benign(0.066) TCGA-86-8672-01 1 208062055 208062055 C A CD34 Missense_Mutation p.R315L 0.13 deleterious(0) benign(0.439) TCGA-86-8672-01 1 214170466 214170466 G T PROX1 Missense_Mutation p.Q196H 0.23 tolerated(0.16) benign(0.343) TCGA-86-8672-01 1 220366657 220366657 C A RAB3GAP2 Missense_Mutation p.A399S 0.21 tolerated(0.26) probably_damaging(0.991) TCGA-86-8672-01 1 223178858 223178858 T A DISP1 Missense_Mutation p.N1373K 0.30 tolerated_low_confidence(0.72) benign(0.008) TCGA-86-8672-01 1 22987663 22987663 G T C1QB Silent p.V182V 0.41 TCGA-86-8672-01 1 237617764 237617764 C A RYR2 Missense_Mutation p.L456M 0.17 benign(0.241) TCGA-86-8672-01 1 237947486 237947486 C A RYR2 Silent p.T4158T 0.22 TCGA-86-8672-01 1 240371492 240371492 C A FMN2 Missense_Mutation p.A1127E 0.14 unknown(0) TCGA-86-8672-01 1 248512188 248512188 A G OR14C36 Missense_Mutation p.M38V 0.28 tolerated(0.55) benign(0.009) TCGA-86-8672-01 1 33623925 33623925 A G TRIM62 Missense_Mutation p.F269S 0.25 tolerated(0.09) benign(0.006) TCGA-86-8672-01 1 57537198 57537198 G T DAB1 Nonsense_Mutation p.Y185* 0.05 TCGA-86-8672-01 1 65855253 65855253 C T DNAJC6 Missense_Mutation p.P471S 0.08 tolerated(0.13) benign(0.225) TCGA-86-8672-01 1 67145393 67145393 G T SGIP1 Missense_Mutation p.A258S 0.16 tolerated_low_confidence(0.27) benign(0.097) TCGA-86-8672-01 1 67220451 67220451 G T TCTEX1D1 Missense_Mutation p.R37L 0.13 deleterious(0.04) benign(0.001) TCGA-86-8672-01 1 75038769 75038769 A G C1orf173 Silent p.A875A 0.11 TCGA-86-8672-01 1 92546098 92546098 G T BTBD8 5'UTR 0.27 TCGA-86-8672-01 20 1616208 1616208 C G SIRPG Missense_Mutation p.R262S 0.19 tolerated(0.76) benign(0.036) TCGA-86-8672-01 20 18794880 18794880 C T SCP2D1 Silent p.L141L 0.13 TCGA-86-8672-01 20 20350198 20350198 C A INSM1 Silent p.A429A 0.35 TCGA-86-8672-01 20 2559840 2559840 A C TMC2 Missense_Mutation p.I232L 0.23 deleterious(0) benign(0.303) TCGA-86-8672-01 20 31998086 31998086 G A SNTA1 Silent p.L364L 0.10 TCGA-86-8672-01 20 36932570 36932570 C A BPI 5'UTR 0.07 TCGA-86-8672-01 20 36932571 36932571 C A BPI 5'UTR 0.07 TCGA-86-8672-01 20 42088524 42088524 C G SRSF6 Missense_Mutation p.Q124E 0.26 deleterious(0.03) probably_damaging(0.946) TCGA-86-8672-01 20 43552822 43552822 G A PABPC1L Silent p.K299K 0.04 TCGA-86-8672-01 20 44439521 44439521 C T DNTTIP1 Intron 0.12 TCGA-86-8672-01 20 55953215 55953215 G C RAE1 3'UTR 0.36 TCGA-86-8672-01 20 61510951 61510951 G A DIDO1 Silent p.R2119R 0.07 TCGA-86-8672-01 20 62192792 62192792 C A HELZ2 Silent p.R2288R 0.15 TCGA-86-8672-01 20 9561251 9561251 G A PAK7 Silent p.H177H 0.12 TCGA-86-8672-01 21 11098868 11098868 C T BAGE2 RNA 0.17 TCGA-86-8672-01 21 16340323 16340323 T A NRIP1 Missense_Mutation p.N64I 0.13 deleterious(0) possibly_damaging(0.879) TCGA-86-8672-01 21 17203882 17203882 G T USP25 Missense_Mutation p.G643C 0.13 deleterious(0) probably_damaging(0.93) TCGA-86-8672-01 21 22790885 22790885 G T NCAM2 Missense_Mutation p.L492F 0.10 deleterious(0.01) possibly_damaging(0.823) TCGA-86-8672-01 21 30698576 30698577 AA C BACH1 Frame_Shift_Del p.K144Tfs*22 0.14 TCGA-86-8672-01 21 31874311 31874311 C T KRTAP19-5 Missense_Mutation p.R33H 0.26 tolerated_low_confidence(0.5) unknown(0) TCGA-86-8672-01 21 32639190 32639190 C A TIAM1 Silent p.S33S 0.08 TCGA-86-8672-01 21 34883752 34883752 C G GART Missense_Mutation p.W707C 0.34 deleterious(0) probably_damaging(0.999) TCGA-86-8672-01 21 42622723 42622723 G A BACE2 Silent p.A343A 0.06 TCGA-86-8672-01 21 46642025 46642025 G A ADARB1 Silent p.A713A 0.14 TCGA-86-8672-01 21 47754604 47754604 C T PCNT Silent p.V187V 0.06 TCGA-86-8672-01 22 36122925 36122925 C T APOL5 Silent p.F270F 0.08 TCGA-86-8672-01 22 36684408 36684408 C A MYH9 Missense_Mutation p.A1608S 0.21 possibly_damaging(0.902) TCGA-86-8672-01 22 46932287 46932287 C A CELSR1 Missense_Mutation p.G261C 0.26 deleterious(0) probably_damaging(0.999) TCGA-86-8672-01 2 103335611 103335611 G T MFSD9 Silent p.G231G 0.12 TCGA-86-8672-01 2 105890008 105890008 C A TGFBRAP1 Missense_Mutation p.R602I 0.27 deleterious(0) benign(0.195) TCGA-86-8672-01 2 1168853 1168853 G A SNTG2 Missense_Mutation p.G192E 0.12 tolerated(0.1) probably_damaging(0.935) TCGA-86-8672-01 2 121107088 121107088 C T INHBB Missense_Mutation p.R288C 0.14 deleterious(0) probably_damaging(0.999) TCGA-86-8672-01 2 133887549 133887549 C A NCKAP5 Splice_Site p.X114_splice 0.30 TCGA-86-8672-01 2 141083410 141083410 C A LRP1B Missense_Mutation p.W4087C 0.11 possibly_damaging(0.759) TCGA-86-8672-01 2 152410453 152410453 G C NEB Silent p.S6505S 0.07 TCGA-86-8672-01 2 155098678 155098678 G A GALNT13 Silent p.E149E 0.22 TCGA-86-8672-01 2 162877172 162877172 G T DPP4 Silent p.T365T 0.09 TCGA-86-8672-01 2 162891712 162891712 G A DPP4 Silent p.L246L 0.19 TCGA-86-8672-01 2 166025292 166025292 C G SCN3A Missense_Mutation p.V143L 0.07 deleterious(0.04) probably_damaging(0.927) TCGA-86-8672-01 2 168104122 168104122 C - XIRP2 Frame_Shift_Del p.R2075Efs*5 0.08 TCGA-86-8672-01 2 168107313 168107313 T A XIRP2 Silent p.T3137T 0.10 TCGA-86-8672-01 2 176988953 176988953 T A HOXD9 3'UTR 0.11 TCGA-86-8672-01 2 179393495 179393495 G T TTN Silent p.T35661T 0.20 TCGA-86-8672-01 2 185802451 185802451 A T ZNF804A Silent p.S776S 0.12 TCGA-86-8672-01 2 185802559 185802559 G T ZNF804A Silent p.R812R 0.11 TCGA-86-8672-01 2 202137618 202137618 C T CASP8 Intron 0.24 TCGA-86-8672-01 2 208632027 208632027 C A FZD5 Missense_Mutation p.E479D 0.14 tolerated(0.09) probably_damaging(0.957) TCGA-86-8672-01 2 219544794 219544794 C T STK36 Missense_Mutation p.S376F 0.24 deleterious(0) benign(0.035) TCGA-86-8672-01 2 220332045 220332045 G C SPEG Missense_Mutation p.A1011P 0.33 probably_damaging(0.998) TCGA-86-8672-01 2 225717789 225717789 G C DOCK10 Missense_Mutation p.Q647E 0.13 tolerated(0.74) benign(0) TCGA-86-8672-01 2 234749978 234749978 C T HJURP Missense_Mutation p.R483H 0.15 tolerated(0.78) benign(0) TCGA-86-8672-01 2 241656800 241656800 G A KIF1A Missense_Mutation p.S1786F 0.17 deleterious_low_confidence(0) possibly_damaging(0.575) TCGA-86-8672-01 2 242007182 242007182 C A SNED1 Missense_Mutation p.P1005H 0.11 deleterious(0) probably_damaging(0.992) TCGA-86-8672-01 2 25469085 25469085 C T DNMT3A Missense_Mutation p.R458Q 0.07 tolerated(0.07) probably_damaging(0.923) TCGA-86-8672-01 2 264964 264964 G A ACP1 5'UTR 0.08 TCGA-86-8672-01 2 32710768 32710768 G T BIRC6 Missense_Mutation p.M2585I 0.09 possibly_damaging(0.535) TCGA-86-8672-01 2 38178373 38178373 T C RMDN2 Intron 0.17 TCGA-86-8672-01 2 42282123 42282123 A G PKDCC Silent p.S359S 0.15 TCGA-86-8672-01 2 90044395 90044395 G T IGKV2D-24 Nonsense_Mutation p.E106* 0.09 TCGA-86-8672-01 2 98351804 98351804 C A ZAP70 Missense_Mutation p.Q392K 0.18 tolerated(0.19) benign(0.142) TCGA-86-8672-01 3 10442727 10442727 C T ATP2B2 Missense_Mutation p.G231S 0.22 tolerated(0.6) probably_damaging(1) TCGA-86-8672-01 3 11071038 11071038 G T SLC6A1 Missense_Mutation p.Q441H 0.36 deleterious(0) probably_damaging(0.987) TCGA-86-8672-01 3 142272202 142272202 T G ATR Missense_Mutation p.H891P 0.34 tolerated(0.09) probably_damaging(0.929) TCGA-86-8672-01 3 1424836 1424836 A C CNTN6 Missense_Mutation p.T793P 0.05 deleterious(0.01) benign(0.048) TCGA-86-8672-01 3 164776792 164776792 A T SI Missense_Mutation p.W453R 0.50 deleterious(0) probably_damaging(0.997) TCGA-86-8672-01 3 170078153 170078153 C G SKIL Missense_Mutation p.Q12E 0.05 tolerated_low_confidence(0.27) benign(0.001) TCGA-86-8672-01 3 184093708 184093708 G T THPO Missense_Mutation p.L37I 0.45 tolerated(0.37) probably_damaging(0.996) TCGA-86-8672-01 3 194081558 194081558 G A LRRC15 Missense_Mutation p.P78L 0.42 tolerated(0.29) benign(0.004) TCGA-86-8672-01 3 24270475 24270475 T C THRB 5'UTR 0.05 TCGA-86-8672-01 3 37574940 37574940 A G ITGA9 Silent p.K503K 0.29 TCGA-86-8672-01 3 48436029 48436029 A G FBXW12 Missense_Mutation p.I434V 0.30 tolerated(0.44) benign(0.009) TCGA-86-8672-01 3 52623229 52623229 G C PBRM1 Nonsense_Mutation p.S941* 0.42 TCGA-86-8672-01 3 93779965 93779965 G T DHFRL1 Missense_Mutation p.H131N 0.36 tolerated(0.31) benign(0.011) TCGA-86-8672-01 3 95374470 95374471 - A MTHFD2P1 RNA 0.24 TCGA-86-8672-01 4 153691700 153691700 C T TIGD4 Missense_Mutation p.G153S 0.25 tolerated(0.61) benign(0.008) TCGA-86-8672-01 4 17814581 17814581 C G NCAPG Missense_Mutation p.C119W 0.18 deleterious(0) probably_damaging(0.991) TCGA-86-8672-01 4 183675964 183675964 G A TENM3 Missense_Mutation p.D1482N 0.38 tolerated(0.13) possibly_damaging(0.811) TCGA-86-8672-01 4 187518153 187518153 C A FAT1 Nonsense_Mutation p.E4181* 0.30 TCGA-86-8672-01 4 187518154 187518154 C A FAT1 Silent p.A4180A 0.32 TCGA-86-8672-01 4 22737799 22737799 C A GBA3 Missense_Mutation p.P85H 0.27 deleterious(0) probably_damaging(1) TCGA-86-8672-01 4 3318262 3318262 C T RGS12 Missense_Mutation p.P122L 0.09 deleterious(0) probably_damaging(0.999) TCGA-86-8672-01 4 4543583 4543583 C A STX18 Nonsense_Mutation p.E37* 0.12 TCGA-86-8672-01 4 47570926 47570926 G T ATP10D Missense_Mutation p.V976L 0.25 tolerated(0.67) benign(0.065) TCGA-86-8672-01 4 520832 520832 G T PIGG Missense_Mutation p.D692Y 0.19 deleterious(0.01) probably_damaging(0.928) TCGA-86-8672-01 4 81123425 81123425 A C PRDM8 Missense_Mutation p.N270T 0.28 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-86-8672-01 4 85639593 85639593 A G WDFY3 Missense_Mutation p.I2579T 0.34 deleterious(0) benign(0.171) TCGA-86-8672-01 4 89042903 89042903 T C ABCG2 Silent p.R191R 0.25 TCGA-86-8672-01 5 121409737 121409737 T A LOX Missense_Mutation p.R336W 0.36 deleterious(0) probably_damaging(0.999) TCGA-86-8672-01 5 1243750 1243750 G T SLC6A18 Missense_Mutation p.M404I 0.17 tolerated(0.23) benign(0) TCGA-86-8672-01 5 133496684 133496684 G T SKP1 Silent p.L103L 0.29 TCGA-86-8672-01 5 140167382 140167382 G T PCDHA1 Missense_Mutation p.A503S 0.39 tolerated_low_confidence(0.2) benign(0.117) TCGA-86-8672-01 5 140958702 140958702 G A DIAPH1 Nonsense_Mutation p.Q296* 0.32 TCGA-86-8672-01 5 159781901 159781901 C A C1QTNF2 Missense_Mutation p.G85C 0.50 deleterious(0) unknown(0) TCGA-86-8672-01 5 161569183 161569183 C A GABRG2 Silent p.V301V 0.12 TCGA-86-8672-01 5 26915865 26915865 G T CDH9 Missense_Mutation p.D132E 0.19 deleterious(0.02) benign(0.176) TCGA-86-8672-01 5 33658333 33658333 C A ADAMTS12 Silent p.S382S 0.23 TCGA-86-8672-01 5 41510663 41510663 A T PLCXD3 5'UTR 0.27 TCGA-86-8672-01 5 41739590 41739590 C A OXCT1 Missense_Mutation p.V475L 0.22 deleterious(0) benign(0.222) TCGA-86-8672-01 5 71493171 71493171 G A MAP1B Missense_Mutation p.S1330N 0.36 probably_damaging(0.993) TCGA-86-8672-01 5 7690896 7690896 G T ADCY2 Missense_Mutation p.Q271H 0.19 tolerated(0.17) benign(0.005) TCGA-86-8672-01 5 80040395 80040395 A G MSH3 Missense_Mutation p.K575R 0.32 tolerated(0.62) benign(0.013) TCGA-86-8672-01 5 82835510 82835510 G A VCAN Missense_Mutation p.E2230K 0.07 deleterious(0.05) benign(0.132) TCGA-86-8672-01 5 82837064 82837064 C A VCAN Missense_Mutation p.Q2748K 0.34 deleterious(0.02) benign(0.407) TCGA-86-8672-01 5 89924614 89924614 A G GPR98 Missense_Mutation p.I492V 0.10 benign(0.141) TCGA-86-8672-01 6 102307314 102307314 C A GRIK2 Silent p.A490A 0.40 TCGA-86-8672-01 6 116938054 116938062 CCCTCTTCC - RSPH4A In_Frame_Del p.P90_S92del 0.28 TCGA-86-8672-01 6 125597375 125597375 G A HDDC2 Missense_Mutation p.P178S 0.19 deleterious(0) possibly_damaging(0.588) TCGA-86-8672-01 6 129636760 129636760 C G LAMA2 Missense_Mutation p.P1232R 0.27 deleterious(0) probably_damaging(1) TCGA-86-8672-01 6 158330991 158330991 G A SNX9 Missense_Mutation p.E295K 0.12 tolerated(0.15) probably_damaging(0.998) TCGA-86-8672-01 6 170594755 170594755 T A DLL1 Missense_Mutation p.D255V 0.32 deleterious(0) probably_damaging(0.999) TCGA-86-8672-01 6 26216683 26216683 C A HIST1H2BG Missense_Mutation p.M63I 0.41 deleterious_low_confidence(0.03) benign(0.14) TCGA-86-8672-01 6 26468073 26468073 G T BTN2A1 Intron 0.45 TCGA-86-8672-01 6 27839994 27839994 C T HIST1H3I Missense_Mutation p.G34S 0.06 deleterious_low_confidence(0.04) probably_damaging(0.985) TCGA-86-8672-01 6 29639265 29639265 T C MOG 3'UTR 0.13 TCGA-86-8672-01 6 31239423 31239423 C A HLA-C Missense_Mutation p.R99L 0.31 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-86-8672-01 6 40399872 40399872 G A LRFN2 Silent p.D327D 0.28 TCGA-86-8672-01 6 44361284 44361284 G T CDC5L Missense_Mutation p.R138L 0.18 deleterious(0) benign(0.143) TCGA-86-8672-01 6 47541908 47541908 G C CD2AP Missense_Mutation p.G217A 0.04 deleterious(0) probably_damaging(0.998) TCGA-86-8672-01 6 50696678 50696678 G T TFAP2D Missense_Mutation p.R236S 0.13 deleterious(0) probably_damaging(0.999) TCGA-86-8672-01 6 51936938 51936938 G A PKHD1 Missense_Mutation p.L193F 0.12 tolerated(0.36) benign(0.091) TCGA-86-8672-01 6 52054018 52054018 C G IL17A Silent p.S132S 0.07 TCGA-86-8672-01 6 52141880 52141880 T C MCM3 Missense_Mutation p.T429A 0.22 deleterious(0) benign(0.215) TCGA-86-8672-01 6 62604692 62604692 C G KHDRBS2 Missense_Mutation p.V220L 0.18 tolerated(0.07) benign(0.004) TCGA-86-8672-01 6 90660555 90660555 C G BACH2 Missense_Mutation p.G424R 0.24 tolerated(0.55) benign(0.045) TCGA-86-8672-01 7 100148056 100148056 G T AGFG2 Missense_Mutation p.R118L 0.09 deleterious(0) possibly_damaging(0.587) TCGA-86-8672-01 7 105752935 105752935 C G SYPL1 Missense_Mutation p.R14P 0.32 tolerated_low_confidence(0.12) benign(0.415) TCGA-86-8672-01 7 106508804 106508804 C G PIK3CG Missense_Mutation p.S266R 0.36 tolerated(0.39) benign(0.127) TCGA-86-8672-01 7 107752390 107752390 C A LAMB4 Missense_Mutation p.G65V 0.31 deleterious(0.02) benign(0.422) TCGA-86-8672-01 7 107756538 107756538 G T LAMB4 Missense_Mutation p.L35I 0.11 deleterious(0) probably_damaging(0.999) TCGA-86-8672-01 7 128845518 128845518 C A SMO Missense_Mutation p.A272E 0.26 tolerated(0.09) possibly_damaging(0.908) TCGA-86-8672-01 7 130023296 130023296 G A CPA1 Nonsense_Mutation p.W183* 0.26 TCGA-86-8672-01 7 130051034 130051034 T G CEP41 Splice_Site p.X70_splice 0.31 TCGA-86-8672-01 7 140051327 140051327 G C SLC37A3 Intron 0.37 TCGA-86-8672-01 7 141756637 141756637 G A MGAM Silent p.T1196T 0.09 TCGA-86-8672-01 7 142168638 142168638 G T TRBV5-4 Missense_Mutation p.H29N 0.31 tolerated(0.09) benign(0.073) TCGA-86-8672-01 7 143048786 143048787 - T CLCN1 Frame_Shift_Ins p.A899Vfs*13 0.15 TCGA-86-8672-01 7 143771401 143771401 T A OR2A25 Missense_Mutation p.F30Y 0.35 deleterious(0) probably_damaging(0.996) TCGA-86-8672-01 7 143771564 143771564 C G OR2A25 Silent p.L84L 0.07 TCGA-86-8672-01 7 147926772 147926772 C A CNTNAP2 Silent p.T1094T 0.30 TCGA-86-8672-01 7 147926773 147926773 C T CNTNAP2 Nonsense_Mutation p.R1095* 0.29 TCGA-86-8672-01 7 149463328 149463328 C T ZNF467 Missense_Mutation p.G88E 0.09 deleterious(0.02) possibly_damaging(0.676) TCGA-86-8672-01 7 150174811 150174811 C T GIMAP8 Silent p.V647V 0.10 TCGA-86-8672-01 7 1521021 1521021 C A INTS1 Silent p.V1269V 0.19 TCGA-86-8672-01 7 21828884 21828884 G A DNAH11 Missense_Mutation p.R3324H 0.22 benign(0.261) TCGA-86-8672-01 7 2966389 2966389 G A CARD11 Silent p.D597D 0.10 TCGA-86-8672-01 7 31690854 31690855 - T CCDC129 Frame_Shift_Ins p.S922Ffs*20 0.13 TCGA-86-8672-01 7 47342658 47342658 G A TNS3 Missense_Mutation p.P1116L 0.13 deleterious(0.01) probably_damaging(1) TCGA-86-8672-01 7 47915711 47915711 G C PKD1L1 Missense_Mutation p.H1256Q 0.19 tolerated(0.15) benign(0.288) TCGA-86-8672-01 7 54610321 54610321 G T VSTM2A 5'UTR 0.19 TCGA-86-8672-01 7 64168264 64168264 G A ZNF107 Missense_Mutation p.E528K 0.12 deleterious(0.04) benign(0.008) TCGA-86-8672-01 7 77552095 77552095 G T PHTF2 Missense_Mutation p.E339D 0.38 tolerated(0.15) probably_damaging(0.997) TCGA-86-8672-01 7 80286000 80286000 G A CD36 Missense_Mutation p.G89S 0.28 deleterious(0) probably_damaging(1) TCGA-86-8672-01 7 88965570 88965570 C G ZNF804B Missense_Mutation p.Q1092E 0.13 deleterious(0.02) benign(0) TCGA-86-8672-01 7 91972526 91972526 G A ANKIB1 Missense_Mutation p.G326R 0.40 deleterious(0.05) benign(0.004) TCGA-86-8672-01 7 92762347 92762347 C T SAMD9L Missense_Mutation p.G980R 0.12 tolerated(0.06) benign(0.399) TCGA-86-8672-01 7 99032657 99032657 G A ATP5J2-PTCD1 Missense_Mutation p.P119L 0.32 tolerated(0.32) benign(0.003) TCGA-86-8672-01 7 99578417 99578417 C A AZGP1 5'Flank 0.29 TCGA-86-8672-01 8 103573072 103573072 C G ODF1 Missense_Mutation p.P238R 0.21 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-86-8672-01 8 113275868 113275868 G C CSMD3 Missense_Mutation p.P3288A 0.31 tolerated(0.08) benign(0.343) TCGA-86-8672-01 8 133855073 133855073 A T PHF20L1 Nonsense_Mutation p.K901* 0.17 TCGA-86-8672-01 8 134147001 134147001 G C TG Missense_Mutation p.S2757T 0.08 deleterious_low_confidence(0.02) benign(0.076) TCGA-86-8672-01 8 144902853 144902853 G A PUF60 Missense_Mutation p.L111F 0.08 deleterious(0.03) probably_damaging(0.994) TCGA-86-8672-01 8 16850716 16850716 C A FGF20 Silent p.V167V 0.09 TCGA-86-8672-01 8 24254873 24254873 G T ADAMDEC1 Missense_Mutation p.Q177H 0.05 tolerated(0.15) benign(0.035) TCGA-86-8672-01 8 25265534 25265534 C G DOCK5 Missense_Mutation p.S1710W 0.40 deleterious(0.02) probably_damaging(0.981) TCGA-86-8672-01 8 37611493 37611493 A T ERLIN2 Nonsense_Mutation p.K294* 0.31 TCGA-86-8672-01 8 77767942 77767942 C A ZFHX4 Missense_Mutation p.H2929N 0.19 probably_damaging(0.946) TCGA-86-8672-01 8 94767153 94767153 G A TMEM67 Missense_Mutation p.R4H 0.29 tolerated_low_confidence(0.13) benign(0.099) TCGA-86-8672-01 8 97621835 97621835 G T SDC2 3'UTR 0.42 TCGA-86-8672-01 9 105767446 105767446 C A CYLC2 Missense_Mutation p.S178Y 0.13 deleterious(0) unknown(0) TCGA-86-8672-01 9 111693389 111693389 C G IKBKAP Missense_Mutation p.R13T 0.19 tolerated(0.26) benign(0.155) TCGA-86-8672-01 9 119737491 119737491 C G ASTN2 Missense_Mutation p.V578L 0.33 tolerated(0.17) unknown(0) TCGA-86-8672-01 9 137708926 137708926 G T COL5A1 Splice_Site p.X1392_splice 0.32 TCGA-86-8672-01 9 138667165 138667165 G C KCNT1 Missense_Mutation p.K751N 0.31 deleterious(0) benign(0.288) TCGA-86-8672-01 9 141008931 141008931 G T CACNA1B Missense_Mutation p.G1880C 0.33 tolerated(0.18) probably_damaging(0.99) TCGA-86-8672-01 9 21304743 21304743 G T IFNA5 Silent p.I171I 0.37 TCGA-86-8672-01 9 32635593 32635593 C G TAF1L 5'UTR 0.28 TCGA-86-8672-01 9 40702806 40702806 C A SPATA31A3 Missense_Mutation p.P155T 0.16 deleterious(0.04) probably_damaging(0.958) TCGA-86-8672-01 9 43885056 43885056 G A CNTNAP3B Silent p.L783L 0.29 TCGA-86-8672-01 9 730219 730219 C A KANK1 Missense_Mutation p.T956K 0.12 tolerated(0.31) benign(0.273) TCGA-86-8672-01 9 740898 740898 C T KANK1 Silent p.L1220L 0.04 TCGA-86-8672-01 9 84530986 84530986 A T SPATA31D5P RNA 0.30 TCGA-86-8672-01 9 94495632 94495632 G A ROR2 Missense_Mutation p.P237S 0.16 deleterious(0.01) probably_damaging(0.982) TCGA-86-8672-01 X 106184702 106184702 C G MORC4 3'UTR 0.30 TCGA-86-8672-01 X 110654145 110654145 G A DCX Silent p.L20L 0.30 TCGA-86-8672-01 X 111025332 111025332 G T TRPC5 Missense_Mutation p.T644K 0.27 deleterious(0) probably_damaging(0.995) TCGA-86-8672-01 X 135427292 135427292 C A GPR112 Missense_Mutation p.T476K 0.18 deleterious(0.04) possibly_damaging(0.738) TCGA-86-8672-01 X 136113641 136113641 C G GPR101 Missense_Mutation p.V65L 0.32 deleterious(0.01) probably_damaging(0.938) TCGA-86-8672-01 X 151821590 151821590 G T GABRQ Missense_Mutation p.C582F 0.27 tolerated(0.47) benign(0.002) TCGA-86-8672-01 X 152938118 152938118 G T PNCK Silent p.R118R 0.14 TCGA-86-8672-01 X 153043687 153043687 G T PLXNB3 Intron 0.38 TCGA-86-8672-01 X 17742486 17742486 G T NHS Silent p.R371R 0.24 TCGA-86-8672-01 X 30269348 30269348 C A MAGEB1 Silent p.T246T 0.28 TCGA-86-8672-01 X 45010856 45010856 G T CXorf36 3'UTR 0.21 TCGA-86-8672-01 X 47102052 47102072 CGCTTCTATAAGCTCTATCAG - USP11 In_Frame_Del p.R549_Q555del 0.14 TCGA-86-8672-01 X 49458731 49458731 C G PAGE1 Missense_Mutation p.R46T 0.16 tolerated(0.17) benign(0.008) TCGA-86-8672-01 X 49961597 49961597 A T AKAP4 Missense_Mutation p.L74Q 0.26 deleterious(0) possibly_damaging(0.779) TCGA-86-8672-01 X 591554 591554 C G SHOX 5'UTR 0.13 TCGA-86-8673-01 10 100143548 100143548 T A PYROXD2 3'UTR 0.22 TCGA-86-8673-01 10 101544463 101544463 C A ABCC2 Silent p.A44A 0.23 TCGA-86-8673-01 10 102739732 102739732 G C SEMA4G Missense_Mutation p.E371Q 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-86-8673-01 10 105143084 105143084 C T TAF5 Missense_Mutation p.H542Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-86-8673-01 10 106075004 106075004 A T ITPRIP Missense_Mutation p.L269H 0.18 deleterious(0) probably_damaging(0.999) TCGA-86-8673-01 10 106907446 106907446 G A SORCS3 Silent p.T458T 0.32 TCGA-86-8673-01 10 115365594 115365594 G T NRAP Missense_Mutation p.A1281D 0.21 deleterious(0) probably_damaging(0.962) TCGA-86-8673-01 10 117059629 117059629 T A ATRNL1 Missense_Mutation p.L834Q 0.23 deleterious(0) probably_damaging(0.959) TCGA-86-8673-01 10 119015015 119015015 G T SLC18A2 Silent p.P272P 0.11 TCGA-86-8673-01 10 119015169 119015169 G T SLC18A2 Splice_Site p.X299_splice 0.19 TCGA-86-8673-01 10 121558076 121558076 A G INPP5F Missense_Mutation p.Y357C 0.24 tolerated(0.18) benign(0.006) TCGA-86-8673-01 10 125558659 125558659 A G CPXM2 Missense_Mutation p.V237A 0.17 tolerated(0.11) benign(0.257) TCGA-86-8673-01 10 126715983 126715983 C G CTBP2 Missense_Mutation p.G116R 0.22 tolerated_low_confidence(0.13) benign(0) TCGA-86-8673-01 10 127782595 127782595 C T ADAM12 Missense_Mutation p.M371I 0.20 deleterious(0) benign(0.063) TCGA-86-8673-01 10 128192664 128192664 C A C10orf90 Nonsense_Mutation p.E369* 0.10 TCGA-86-8673-01 10 135123288 135123288 C T ZNF511 Missense_Mutation p.A79V 0.11 deleterious(0.02) benign(0.04) TCGA-86-8673-01 10 30986344 30986344 C T SVILP1 RNA 0.27 TCGA-86-8673-01 10 35318521 35318521 T C CUL2 Silent p.T497T 0.13 TCGA-86-8673-01 10 45496149 45496149 G A C10orf25 Silent p.S53S 0.10 TCGA-86-8673-01 10 48381894 48381894 G T RBP3 3'UTR 0.44 TCGA-86-8673-01 10 48414412 48414412 G T GDF2 Silent p.L152L 0.25 TCGA-86-8673-01 10 50870788 50870788 C A CHAT Missense_Mutation p.T646N 0.18 deleterious(0) probably_damaging(0.967) TCGA-86-8673-01 10 50944192 50944192 T C OGDHL Missense_Mutation p.Q929R 0.19 tolerated(0.45) benign(0) TCGA-86-8673-01 10 50944193 50944193 G T OGDHL Missense_Mutation p.Q929K 0.15 tolerated(0.48) benign(0) TCGA-86-8673-01 10 52601737 52601737 C A A1CF Nonsense_Mutation p.E92* 0.21 TCGA-86-8673-01 10 55570404 55570404 C T PCDH15 Missense_Mutation p.G1472E 0.19 benign(0.038) TCGA-86-8673-01 10 55849823 55849823 C A PCDH15 Missense_Mutation p.A640S 0.11 deleterious(0.01) probably_damaging(0.98) TCGA-86-8673-01 10 55944996 55944996 A T PCDH15 Missense_Mutation p.N446K 0.18 tolerated(0.15) possibly_damaging(0.867) TCGA-86-8673-01 10 5777270 5777270 C T FAM208B Missense_Mutation p.A403V 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-86-8673-01 10 61836183 61836183 T A ANK3 Nonsense_Mutation p.R1486* 0.18 TCGA-86-8673-01 10 98155655 98155655 C A TLL2 Nonsense_Mutation p.G503* 0.19 TCGA-86-8673-01 10 98155656 98155656 C A TLL2 Silent p.V502V 0.19 TCGA-86-8673-01 10 98156954 98156954 G T TLL2 Missense_Mutation p.A458E 0.13 deleterious(0) probably_damaging(0.991) TCGA-86-8673-01 10 98325170 98325170 T A TM9SF3 Silent p.P104P 0.28 TCGA-86-8673-01 11 103092821 103092821 A T DYNC2H1 Missense_Mutation p.K3057M 0.38 possibly_damaging(0.649) TCGA-86-8673-01 11 105623795 105623795 C A GRIA4 Silent p.A112A 0.31 TCGA-86-8673-01 11 121016437 121016437 T A TECTA Silent p.G1239G 0.22 TCGA-86-8673-01 11 124120594 124120594 C A OR8G1 Missense_Mutation p.P58T 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.527) TCGA-86-8673-01 11 1271909 1271909 G A MUC5B Missense_Mutation p.G4600D 0.18 unknown(0) TCGA-86-8673-01 11 132812823 132812823 G T OPCML Silent p.L55L 0.08 TCGA-86-8673-01 11 16811358 16811358 C A PLEKHA7 Missense_Mutation p.R1040S 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-86-8673-01 11 18326996 18326996 A G HPS5 Missense_Mutation p.L290S 0.18 deleterious(0) probably_damaging(0.993) TCGA-86-8673-01 11 22833495 22833495 A T GAS2 Missense_Mutation p.K292M 0.14 deleterious(0.05) benign(0.221) TCGA-86-8673-01 11 26718760 26718760 G T SLC5A12 Missense_Mutation p.P331T 0.14 deleterious(0) probably_damaging(0.976) TCGA-86-8673-01 11 34149090 34149090 C G NAT10 Silent p.P396P 0.18 TCGA-86-8673-01 11 35513645 35513645 C A PAMR1 Missense_Mutation p.K109N 0.34 tolerated(0.42) probably_damaging(0.999) TCGA-86-8673-01 11 3988877 3988877 G A STIM1 Missense_Mutation p.A79T 0.29 tolerated(0.1) possibly_damaging(0.899) TCGA-86-8673-01 11 5269500 5269500 G T HBG1 3'UTR 0.18 TCGA-86-8673-01 11 55406632 55406632 A T OR4P4 Nonsense_Mutation p.K267* 0.20 TCGA-86-8673-01 11 55681465 55681465 C T OR5W2 Silent p.V198V 0.21 TCGA-86-8673-01 11 59271761 59271761 C A OR4D11 Missense_Mutation p.S238Y 0.26 deleterious(0.01) probably_damaging(0.99) TCGA-86-8673-01 11 59282900 59282900 A C OR4D9 Missense_Mutation p.N172T 0.18 deleterious(0) probably_damaging(0.933) TCGA-86-8673-01 11 60201258 60201258 G A MS4A5 Missense_Mutation p.M120I 0.27 deleterious(0.03) possibly_damaging(0.854) TCGA-86-8673-01 11 65787787 65787787 C T CATSPER1 Splice_Site p.X688_splice 0.17 TCGA-86-8673-01 11 67410089 67410089 G A ACY3 3'UTR 0.17 TCGA-86-8673-01 11 6942467 6942467 C T OR2D3 Missense_Mutation p.L79F 0.23 deleterious(0) probably_damaging(0.997) TCGA-86-8673-01 11 73068350 73068350 G T ARHGEF17 Silent p.L1355L 0.30 TCGA-86-8673-01 11 89185027 89185027 G T NOX4 Missense_Mutation p.L64I 0.12 deleterious(0) probably_damaging(1) TCGA-86-8673-01 11 89768529 89768529 C A TRIM49C Silent p.V50V 0.23 TCGA-86-8673-01 11 89768530 89768530 C A TRIM49C Missense_Mutation p.Q51K 0.25 tolerated(0.6) benign(0.214) TCGA-86-8673-01 11 93754533 93754533 A T HEPHL1 5'UTR 0.14 TCGA-86-8673-01 11 94134118 94134118 T A GPR83 Missense_Mutation p.N99I 0.32 deleterious(0.01) possibly_damaging(0.781) TCGA-86-8673-01 12 100431438 100431440 ATG - UHRF1BP1L In_Frame_Del p.H1457del 0.22 TCGA-86-8673-01 12 104109661 104109661 A T STAB2 Missense_Mutation p.N1536Y 0.23 deleterious(0) probably_damaging(0.997) TCGA-86-8673-01 12 109306464 109306464 G T SVOP Nonsense_Mutation p.C433* 0.22 TCGA-86-8673-01 12 11286084 11286084 T A TAS2R30 Missense_Mutation p.R254W 0.14 tolerated(0.08) possibly_damaging(0.818) TCGA-86-8673-01 12 12274167 12274167 A G LRP6 Missense_Mutation p.S1579P 0.28 deleterious(0.01) probably_damaging(0.99) TCGA-86-8673-01 12 125455891 125455891 A T DHX37 Missense_Mutation p.I383N 0.17 deleterious(0) probably_damaging(0.974) TCGA-86-8673-01 12 130648984 130648984 C G FZD10 Silent p.P499P 0.11 TCGA-86-8673-01 12 18234395 18234395 T A RERGL Silent p.S116S 0.21 TCGA-86-8673-01 12 1940653 1940653 G T LRTM2 Missense_Mutation p.R207L 0.19 tolerated(0.12) probably_damaging(0.966) TCGA-86-8673-01 12 26493142 26493142 C G ITPR2 Silent p.L2659L 0.38 TCGA-86-8673-01 12 29650613 29650613 G T OVCH1 Missense_Mutation p.L3M 0.10 tolerated_low_confidence(0.05) unknown(0) TCGA-86-8673-01 12 32138251 32138251 G A KIAA1551 Silent p.K1454K 0.42 TCGA-86-8673-01 12 44781921 44781921 G C TMEM117 Silent p.G337G 0.20 TCGA-86-8673-01 12 4543514 4543514 G C FGF6 Missense_Mutation p.P165R 0.16 deleterious(0) probably_damaging(1) TCGA-86-8673-01 12 48391979 48391979 C G COL2A1 Missense_Mutation p.Q105H 0.05 unknown(0) TCGA-86-8673-01 12 51442837 51442837 C T LETMD1 Missense_Mutation p.S48F 0.18 deleterious(0) probably_damaging(0.968) TCGA-86-8673-01 12 52822501 52822501 G T KRT75 Silent p.G354G 0.22 TCGA-86-8673-01 12 53839867 53839867 C G PRR13 3'UTR 0.05 TCGA-86-8673-01 12 56221665 56221665 C T DNAJC14 Missense_Mutation p.V260I 0.16 tolerated(0.07) benign(0.101) TCGA-86-8673-01 12 57486979 57486979 G A NAB2 Splice_Site p.X426_splice 0.14 TCGA-86-8673-01 12 6134818 6134818 G T VWF Silent p.I1050I 0.33 TCGA-86-8673-01 12 78388594 78388594 G T NAV3 Missense_Mutation p.R228I 0.39 deleterious(0) probably_damaging(0.998) TCGA-86-8673-01 12 81777926 81777926 A C PPFIA2 Missense_Mutation p.M287R 0.15 tolerated(0.11) possibly_damaging(0.637) TCGA-86-8673-01 12 82871095 82871095 G - METTL25 Frame_Shift_Del p.I562Ffs*9 0.18 TCGA-86-8673-01 12 85500390 85500390 G T LRRIQ1 Missense_Mutation p.W1125L 0.39 deleterious(0.02) possibly_damaging(0.886) TCGA-86-8673-01 12 9000179 9000179 C T A2ML1 Missense_Mutation p.P573L 0.18 deleterious(0) probably_damaging(0.999) TCGA-86-8673-01 12 9985931 9985931 G T KLRF1 Nonsense_Mutation p.G73* 0.30 TCGA-86-8673-01 13 113514614 113514614 C A ATP11A Missense_Mutation p.T914N 0.34 deleterious(0) benign(0.368) TCGA-86-8673-01 13 29012433 29012433 T A FLT1 Silent p.I146I 0.35 TCGA-86-8673-01 13 32800046 32800046 G T FRY Missense_Mutation p.R1714L 0.17 deleterious(0.04) benign(0.115) TCGA-86-8673-01 13 53286947 53286947 C G LECT1 Missense_Mutation p.D176H 0.20 deleterious(0.01) possibly_damaging(0.792) TCGA-86-8673-01 13 58208153 58208153 G C PCDH17 Silent p.L491L 0.10 TCGA-86-8673-01 13 58298963 58298963 G T PCDH17 Missense_Mutation p.K1005N 0.23 deleterious(0.05) benign(0.119) TCGA-86-8673-01 13 61986763 61986763 T C PCDH20 Missense_Mutation p.E490G 0.05 deleterious(0) possibly_damaging(0.776) TCGA-86-8673-01 13 70535456 70535456 G T KLHL1 Silent p.V267V 0.44 TCGA-86-8673-01 13 78477731 78477731 C T EDNRB Silent p.E255E 0.28 TCGA-86-8673-01 13 97639557 97639557 C A OXGR1 Missense_Mutation p.A153S 0.40 tolerated(0.11) benign(0.14) TCGA-86-8673-01 13 99378637 99378637 A T SLC15A1 Missense_Mutation p.Y30N 0.37 deleterious(0) probably_damaging(0.993) TCGA-86-8673-01 14 102676039 102676039 C T WDR20 Missense_Mutation p.T542M 0.16 deleterious(0) probably_damaging(0.991) TCGA-86-8673-01 14 105716227 105716227 G A BTBD6 Missense_Mutation p.E226K 0.16 deleterious(0.01) possibly_damaging(0.843) TCGA-86-8673-01 14 105716248 105716248 G A BTBD6 Missense_Mutation p.E233K 0.25 tolerated(0.9) benign(0.219) TCGA-86-8673-01 14 105716559 105716559 G A BTBD6 Silent p.Q336Q 0.13 TCGA-86-8673-01 14 23866022 23866022 G T MYH6 Missense_Mutation p.R725S 0.18 tolerated(0.07) possibly_damaging(0.533) TCGA-86-8673-01 14 24906463 24906463 C G KHNYN Missense_Mutation p.S670C 0.10 deleterious(0) probably_damaging(0.997) TCGA-86-8673-01 14 31598368 31598368 T A HECTD1 Missense_Mutation p.K1403N 0.19 tolerated(0.31) benign(0.006) TCGA-86-8673-01 14 45478119 45478119 C A FAM179B Missense_Mutation p.H970N 0.31 deleterious(0.02) benign(0.062) TCGA-86-8673-01 14 47120662 47120662 G C RPL10L Missense_Mutation p.P93R 0.16 deleterious(0) probably_damaging(0.999) TCGA-86-8673-01 14 47343383 47343383 C A MDGA2 Nonsense_Mutation p.E820* 0.19 TCGA-86-8673-01 14 57268796 57268796 G C OTX2 Missense_Mutation p.P184R 0.06 deleterious(0) possibly_damaging(0.703) TCGA-86-8673-01 14 59112775 59112775 C A DACT1 Missense_Mutation p.S478R 0.09 tolerated(0.13) possibly_damaging(0.488) TCGA-86-8673-01 14 70714022 70714022 G T ADAM21P1 RNA 0.11 TCGA-86-8673-01 14 75936060 75936060 G T JDP2 Missense_Mutation p.R136L 0.20 tolerated(0.05) benign(0.005) TCGA-86-8673-01 14 79181251 79181251 T G NRXN3 Missense_Mutation p.Y232D 0.13 tolerated(0.1) probably_damaging(0.988) TCGA-86-8673-01 14 86087880 86087881 TG A FLRT2 Frame_Shift_Del p.W8Sfs*9 0.22 TCGA-86-8673-01 14 91386623 91386623 T A RPS6KA5 Missense_Mutation p.M245L 0.19 tolerated(1) benign(0.046) TCGA-86-8673-01 14 94079180 94079180 C A UNC79 Missense_Mutation p.D1087E 0.31 tolerated(0.14) probably_damaging(0.995) TCGA-86-8673-01 14 99723932 99723932 G A BCL11B Silent p.S101S 0.21 TCGA-86-8673-01 15 25336860 25336860 C T SNORD116-23 5'Flank 0.24 TCGA-86-8673-01 15 27185207 27185207 C A GABRA5 Missense_Mutation p.P287Q 0.35 deleterious(0) probably_damaging(0.989) TCGA-86-8673-01 15 28228524 28228524 G A OCA2 Silent p.V490V 0.19 TCGA-86-8673-01 15 33926860 33926860 G T RYR3 Missense_Mutation p.R1034M 0.18 probably_damaging(0.975) TCGA-86-8673-01 15 33941391 33941391 C A RYR3 Missense_Mutation p.T1366K 0.16 possibly_damaging(0.862) TCGA-86-8673-01 15 33954793 33954793 T A RYR3 Missense_Mutation p.L1688M 0.16 possibly_damaging(0.86) TCGA-86-8673-01 15 37390206 37390206 G C MEIS2 Silent p.V69V 0.12 TCGA-86-8673-01 15 41222834 41222834 G T DLL4 Silent p.S116S 0.22 TCGA-86-8673-01 15 75562472 75562472 G A GOLGA6C Missense_Mutation p.G672S 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-86-8673-01 15 75687134 75687134 C A SIN3A Nonsense_Mutation p.E722* 0.22 TCGA-86-8673-01 15 81274502 81274502 C T MESDC2 Missense_Mutation p.G79R 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-86-8673-01 15 82574837 82574837 C A FAM154B Missense_Mutation p.L211M 0.45 deleterious(0.05) benign(0.028) TCGA-86-8673-01 16 15704859 15704859 C T KIAA0430 Missense_Mutation p.E1242K 0.04 deleterious(0.03) benign(0.366) TCGA-86-8673-01 16 18549980 18549980 C T NOMO2 Missense_Mutation p.G363D 0.18 deleterious(0) probably_damaging(0.992) TCGA-86-8673-01 16 19070882 19070882 G T TMC7 Intron 0.27 TCGA-86-8673-01 16 20944795 20944795 G T DNAH3 Missense_Mutation p.P4011H 0.23 deleterious(0) probably_damaging(0.997) TCGA-86-8673-01 16 23999840 23999840 G T PRKCB Missense_Mutation p.V73L 0.33 deleterious(0.03) possibly_damaging(0.883) TCGA-86-8673-01 16 24895442 24895442 G C SLC5A11 Missense_Mutation p.L218F 0.37 deleterious(0) probably_damaging(1) TCGA-86-8673-01 16 27221723 27221723 G C KDM8 Silent p.R131R 0.18 TCGA-86-8673-01 16 30529959 30529959 C G ITGAL Missense_Mutation p.F1049L 0.12 tolerated(1) benign(0.001) TCGA-86-8673-01 16 31051257 31051257 G C STX4 3'UTR 0.21 TCGA-86-8673-01 16 31475762 31475762 C - ARMC5 Frame_Shift_Del p.D475Tfs*69 0.19 TCGA-86-8673-01 16 31926454 31926454 A G ZNF267 Missense_Mutation p.Y295C 0.47 deleterious(0.04) benign(0.322) TCGA-86-8673-01 16 33647518 33647518 C A RP11-812E19.9 Nonsense_Mutation p.G28* 0.34 TCGA-86-8673-01 16 49670204 49670204 C A ZNF423 Silent p.R953R 0.12 TCGA-86-8673-01 16 49670205 49670205 C A ZNF423 Missense_Mutation p.R953L 0.12 tolerated(0.58) benign(0.018) TCGA-86-8673-01 16 51174348 51174348 G T SALL1 Silent p.S595S 0.20 TCGA-86-8673-01 16 56396138 56396138 C T AMFR 3'UTR 0.26 TCGA-86-8673-01 16 56669811 56669811 T A MT1M 3'Flank 0.11 TCGA-86-8673-01 16 67686183 67686183 G A RLTPR Missense_Mutation p.E920K 0.19 tolerated(0.68) benign(0.02) TCGA-86-8673-01 16 67976477 67976477 C G LCAT Missense_Mutation p.E179D 0.10 tolerated(0.34) benign(0.012) TCGA-86-8673-01 16 67976479 67976479 C A LCAT Nonsense_Mutation p.E179* 0.10 TCGA-86-8673-01 16 68025750 68025750 T A DPEP2 Missense_Mutation p.N218I 0.28 deleterious(0) probably_damaging(0.997) TCGA-86-8673-01 16 70162977 70162977 T A PDPR Missense_Mutation p.S187T 0.06 tolerated(0.34) benign(0.077) TCGA-86-8673-01 16 71419504 71419504 C G CALB2 Missense_Mutation p.H218D 0.19 tolerated(0.42) benign(0.002) TCGA-86-8673-01 16 74394622 74394622 C A RP11-252A24.2 RNA 0.09 TCGA-86-8673-01 16 849026 849026 A T GNG13 Missense_Mutation p.Y18N 0.10 deleterious(0.02) benign(0.165) TCGA-86-8673-01 17 10346804 10346804 A G MYH4 Missense_Mutation p.L1903P 0.18 deleterious(0.03) possibly_damaging(0.466) TCGA-86-8673-01 17 10411687 10411687 C T MYH1 Silent p.A630A 0.22 TCGA-86-8673-01 17 11737984 11737984 C T DNAH9 Silent p.A3092A 0.20 TCGA-86-8673-01 17 18651357 18651357 A G FBXW10 Silent p.T203T 0.16 TCGA-86-8673-01 17 27902412 27902412 G C GIT1 Missense_Mutation p.L644V 0.17 tolerated_low_confidence(0.37) benign(0.266) TCGA-86-8673-01 17 30179859 30179859 C T COPRS Silent p.E119E 0.12 TCGA-86-8673-01 17 31618466 31618466 T C ASIC2 Missense_Mutation p.K223R 0.17 tolerated(1) benign(0.096) TCGA-86-8673-01 17 38133082 38133082 T C GSDMA Missense_Mutation p.M370T 0.11 deleterious(0) benign(0.229) TCGA-86-8673-01 17 40262779 40262779 C T DHX58 Missense_Mutation p.A175T 0.19 deleterious(0.01) possibly_damaging(0.616) TCGA-86-8673-01 17 40718130 40718130 C A COASY 3'Flank 0.29 TCGA-86-8673-01 17 42984591 42984591 G T GFAP 3'Flank 0.18 TCGA-86-8673-01 17 47293984 47293984 G T ABI3 Missense_Mutation p.G70V 0.25 deleterious(0.02) possibly_damaging(0.554) TCGA-86-8673-01 17 54939587 54939587 G C DGKE Missense_Mutation p.R500P 0.17 deleterious(0) probably_damaging(1) TCGA-86-8673-01 17 57737818 57737818 G A CLTC Missense_Mutation p.D346N 0.05 tolerated(0.18) benign(0.151) TCGA-86-8673-01 17 58506772 58506772 G A C17orf64 Missense_Mutation p.R160Q 0.20 tolerated(1) benign(0) TCGA-86-8673-01 17 59560592 59560592 G T TBX4 Missense_Mutation p.M451I 0.14 tolerated(0.11) benign(0.019) TCGA-86-8673-01 17 59958393 59958394 - T INTS2 Frame_Shift_Ins p.N751Kfs*18 0.17 TCGA-86-8673-01 17 62796798 62796798 C T PLEKHM1P RNA 0.17 TCGA-86-8673-01 17 65343328 65343328 C A PSMD12 Silent p.L233L 0.04 TCGA-86-8673-01 17 70119798 70119798 C T SOX9 Missense_Mutation p.P267L 0.12 deleterious(0.01) benign(0.098) TCGA-86-8673-01 17 72540842 72540842 C G CD300C Missense_Mutation p.E102D 0.13 tolerated(0.08) benign(0.011) TCGA-86-8673-01 17 72769122 72769122 C A NAT9 Nonsense_Mutation p.E83* 0.17 TCGA-86-8673-01 17 72851159 72851159 G T GRIN2C Missense_Mutation p.Q25K 0.14 tolerated(0.35) benign(0.005) TCGA-86-8673-01 17 7350841 7350841 A T CHRNB1 Missense_Mutation p.D161V 0.24 deleterious(0) probably_damaging(0.977) TCGA-86-8673-01 17 73944525 73944525 G C ACOX1 Missense_Mutation p.T581R 0.32 deleterious(0) possibly_damaging(0.846) TCGA-86-8673-01 17 74714858 74714858 T A JMJD6 Missense_Mutation p.T389S 0.18 tolerated_low_confidence(0.62) benign(0.005) TCGA-86-8673-01 17 74869014 74869014 G - MGAT5B Frame_Shift_Del p.D63Tfs*10 0.27 TCGA-86-8673-01 17 7577538 7577538 C A TP53 Missense_Mutation p.R248L 0.37 deleterious(0) probably_damaging(1) TCGA-86-8673-01 17 76395507 76395507 C T PGS1 Missense_Mutation p.T197M 0.07 deleterious(0) probably_damaging(0.993) TCGA-86-8673-01 17 7748960 7748960 T C KDM6B Missense_Mutation p.S30P 0.22 unknown(0) TCGA-86-8673-01 18 19996655 19996655 C G CTAGE1 Missense_Mutation p.E374Q 0.24 deleterious(0) possibly_damaging(0.861) TCGA-86-8673-01 18 29055884 29055884 C T DSG3 Silent p.P887P 0.41 TCGA-86-8673-01 18 31319521 31319521 C A ASXL3 Missense_Mutation p.P718Q 0.15 probably_damaging(0.983) TCGA-86-8673-01 18 31323999 31323999 G A ASXL3 Missense_Mutation p.S1396N 0.04 benign(0.008) TCGA-86-8673-01 18 31324871 31324871 C A ASXL3 Missense_Mutation p.P1687T 0.25 benign(0.419) TCGA-86-8673-01 18 43316472 43316472 C A SLC14A1 Silent p.P230P 0.31 TCGA-86-8673-01 18 48584805 48584805 C T SMAD4 Missense_Mutation p.P295S 0.04 tolerated(0.6) benign(0) TCGA-86-8673-01 18 61233928 61233928 G A SERPINB12 Missense_Mutation p.R301Q 0.19 tolerated(0.99) benign(0.009) TCGA-86-8673-01 18 63477231 63477231 G C CDH7 Missense_Mutation p.V168L 0.42 tolerated(0.13) benign(0.007) TCGA-86-8673-01 18 70205887 70205887 C A CBLN2 Splice_Site p.X159_splice 0.37 TCGA-86-8673-01 19 15734093 15734093 C G CYP4F8 RNA 0.16 TCGA-86-8673-01 19 16687536 16687536 G A MED26 Missense_Mutation p.R369W 0.53 tolerated(0.21) benign(0.007) TCGA-86-8673-01 19 17644491 17644491 T C FAM129C Silent p.A167A 0.16 TCGA-86-8673-01 19 17644492 17644492 C T FAM129C Missense_Mutation p.L168F 0.16 tolerated(0.07) probably_damaging(0.992) TCGA-86-8673-01 19 30935820 30935820 C T ZNF536 Nonsense_Mutation p.Q451* 0.33 TCGA-86-8673-01 19 31768461 31768461 G T TSHZ3 Silent p.P746P 0.26 TCGA-86-8673-01 19 34262878 34262878 G T CHST8 Missense_Mutation p.G62V 0.18 tolerated(0.29) benign(0.058) TCGA-86-8673-01 19 35642310 35642310 C T FXYD7 Intron 0.17 TCGA-86-8673-01 19 36297649 36297649 G T PRODH2 Silent p.A330A 0.17 TCGA-86-8673-01 19 36338979 36338979 G A NPHS1 Silent p.I468I 0.19 TCGA-86-8673-01 19 36362806 36362806 G T APLP1 Missense_Mutation p.A240S 0.21 tolerated(0.59) benign(0.001) TCGA-86-8673-01 19 36883616 36883616 T C ZFP82 3'UTR 0.50 TCGA-86-8673-01 19 37854243 37854243 C T HKR1 Nonsense_Mutation p.Q516* 0.11 TCGA-86-8673-01 19 38849176 38849176 A G CATSPERG Missense_Mutation p.I491V 0.19 tolerated(0.05) benign(0.068) TCGA-86-8673-01 19 39589104 39589104 C T PAPL Missense_Mutation p.P43L 0.18 tolerated(0.11) benign(0.013) TCGA-86-8673-01 19 39964973 39964973 C T SUPT5H Silent p.S917S 0.20 TCGA-86-8673-01 19 41216010 41216010 C T ADCK4 Silent p.L107L 0.17 TCGA-86-8673-01 19 42341284 42341284 G T LYPD4 Missense_Mutation p.A225E 0.20 deleterious(0) possibly_damaging(0.815) TCGA-86-8673-01 19 43373167 43373167 G C PSG1 Nonsense_Mutation p.Y243* 0.25 TCGA-86-8673-01 19 44471299 44471299 C T ZNF221 Missense_Mutation p.L549F 0.29 tolerated(0.14) possibly_damaging(0.831) TCGA-86-8673-01 19 45774834 45774834 C - MARK4 Frame_Shift_Del p.P220Hfs*74 0.22 TCGA-86-8673-01 19 47951074 47951074 G A SLC8A2 Silent p.D585D 0.17 TCGA-86-8673-01 19 49303514 49303514 T G BCAT2 Missense_Mutation p.Q114P 0.28 deleterious(0) benign(0.026) TCGA-86-8673-01 19 49639080 49639080 C T PPFIA3 Missense_Mutation p.P522L 0.25 deleterious(0.03) benign(0.118) TCGA-86-8673-01 19 49977885 49977885 C - FLT3LG 5'UTR 0.17 TCGA-86-8673-01 19 51128711 51128711 C A SYT3 Missense_Mutation p.D505Y 0.40 deleterious(0) benign(0.282) TCGA-86-8673-01 19 51192129 51192129 C A SHANK1 Missense_Mutation p.G715V 0.30 benign(0.277) TCGA-86-8673-01 19 51323458 51323458 C G KLK1 Missense_Mutation p.G150R 0.13 deleterious(0) probably_damaging(0.99) TCGA-86-8673-01 19 53015298 53015298 C A ZNF578 Missense_Mutation p.A555E 0.07 tolerated(0.41) possibly_damaging(0.523) TCGA-86-8673-01 19 53432303 53432303 G C ZNF321P Missense_Mutation p.I185M 0.04 deleterious(0) possibly_damaging(0.77) TCGA-86-8673-01 19 53572105 53572105 C A ZNF160 Missense_Mutation p.G561V 0.16 deleterious(0) probably_damaging(0.999) TCGA-86-8673-01 19 53884326 53884326 A T ZNF525 Missense_Mutation p.E165V 0.21 deleterious(0.05) benign(0.004) TCGA-86-8673-01 19 54759293 54759293 G T LILRB5 Missense_Mutation p.Q270K 0.21 deleterious(0.02) possibly_damaging(0.634) TCGA-86-8673-01 19 54848801 54848801 C G LILRA4 Silent p.G274G 0.18 TCGA-86-8673-01 19 54930319 54930319 G C TTYH1 Silent p.A48A 0.17 TCGA-86-8673-01 19 55048290 55048290 C T KIR3DX1 Missense_Mutation p.T286M 0.11 deleterious(0.03) benign(0.432) TCGA-86-8673-01 19 55143984 55143984 T A LILRB1 Missense_Mutation p.L244Q 0.24 deleterious(0) probably_damaging(0.957) TCGA-86-8673-01 19 55177857 55177857 C A LILRB4 Missense_Mutation p.P320T 0.16 deleterious(0) benign(0.438) TCGA-86-8673-01 19 55301623 55301623 G T CTB-61M7.1 RNA 0.17 TCGA-86-8673-01 19 55349207 55349207 G T KIR2DS4 Missense_Mutation p.A83S 0.23 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-86-8673-01 19 56443458 56443458 C A NLRP13 Nonsense_Mutation p.E74* 0.17 TCGA-86-8673-01 19 58549569 58549569 A T ZSCAN1 Missense_Mutation p.Q122L 0.17 deleterious(0) benign(0.399) TCGA-86-8673-01 19 58850175 58850175 G T ZSCAN22 Missense_Mutation p.G320V 0.17 deleterious(0) probably_damaging(0.991) TCGA-86-8673-01 19 810957 810957 C A PTBP1 3'UTR 0.24 TCGA-86-8673-01 19 9013905 9013905 C A MUC16 Missense_Mutation p.G12829W 0.31 benign(0.404) TCGA-86-8673-01 19 9062076 9062076 C T MUC16 Missense_Mutation p.R8457K 0.21 unknown(0) TCGA-86-8673-01 19 9063255 9063255 G T MUC16 Missense_Mutation p.S8064Y 0.44 unknown(0) TCGA-86-8673-01 19 9083156 9083156 G T MUC16 Missense_Mutation p.Q2887K 0.45 unknown(0) TCGA-86-8673-01 19 9088935 9088935 A T MUC16 Silent p.A960A 0.18 TCGA-86-8673-01 19 9225959 9225959 G A OR7G1 Silent p.L161L 0.20 TCGA-86-8673-01 19 9958744 9958744 G A PIN1 Missense_Mutation p.E104K 0.17 tolerated(0.74) benign(0.362) TCGA-86-8673-01 1 103400109 103400109 C A COL11A1 Missense_Mutation p.G1166C 0.52 unknown(0) TCGA-86-8673-01 1 108185332 108185332 G T VAV3 Missense_Mutation p.P608H 0.33 deleterious(0.03) benign(0.409) TCGA-86-8673-01 1 110258600 110258600 G T GSTM5 Intron 0.29 TCGA-86-8673-01 1 1120546 1120546 G A TTLL10 Intron 0.11 TCGA-86-8673-01 1 120457930 120457930 C T NOTCH2 Silent p.%3D 0.27 TCGA-86-8673-01 1 120468094 120468094 G A NOTCH2 Nonsense_Mutation p.Q1449* 0.16 TCGA-86-8673-01 1 12321023 12321023 T - VPS13D Frame_Shift_Del p.F411Lfs*76 0.20 TCGA-86-8673-01 1 149762922 149762922 T A FCGR1A Nonsense_Mutation p.L325* 0.65 TCGA-86-8673-01 1 149916620 149916620 C G OTUD7B Silent p.L556L 0.06 TCGA-86-8673-01 1 152083156 152083156 G T TCHH Missense_Mutation p.A846D 0.10 unknown(0) TCGA-86-8673-01 1 152284626 152284626 A T FLG Silent p.R912R 0.29 TCGA-86-8673-01 1 152648856 152648856 T A LCE2C 3'UTR 0.12 TCGA-86-8673-01 1 152777902 152777902 G T LCE1C Missense_Mutation p.P18H 0.15 deleterious_low_confidence(0) unknown(0) TCGA-86-8673-01 1 155252300 155252300 G T HCN3 Missense_Mutation p.W126L 0.07 deleterious(0) possibly_damaging(0.686) TCGA-86-8673-01 1 156874635 156874635 C A PEAR1 Missense_Mutation p.P66H 0.18 deleterious(0.03) possibly_damaging(0.823) TCGA-86-8673-01 1 157771312 157771312 G T FCRL1 Silent p.L314L 0.57 TCGA-86-8673-01 1 158326540 158326540 C T CD1E Missense_Mutation p.P341S 0.04 tolerated(0.33) benign(0.019) TCGA-86-8673-01 1 15833519 15833519 C T CASP9 Missense_Mutation p.V169M 0.04 tolerated(0.07) possibly_damaging(0.718) TCGA-86-8673-01 1 158435468 158435468 G - OR10K1 Frame_Shift_Del p.G40Afs*105 0.38 TCGA-86-8673-01 1 165678714 165678714 C A RP11-466F5.10 5'Flank 0.56 TCGA-86-8673-01 1 16577865 16577865 C A FBXO42 Missense_Mutation p.R485L 0.25 deleterious_low_confidence(0) benign(0.097) TCGA-86-8673-01 1 167815260 167815260 G T ADCY10 Missense_Mutation p.H893Q 0.07 tolerated(0.41) benign(0.439) TCGA-86-8673-01 1 169670752 169670752 C A SELL Missense_Mutation p.A357S 0.15 tolerated(0.13) benign(0.168) TCGA-86-8673-01 1 171484874 171484874 A T PRRC2C Silent p.G132G 0.16 TCGA-86-8673-01 1 179815580 179815580 C A TOR1AIP2 Missense_Mutation p.V347F 0.33 deleterious(0) probably_damaging(1) TCGA-86-8673-01 1 182641955 182641955 C G RGS8 Missense_Mutation p.W2S 0.13 tolerated_low_confidence(0.17) benign(0) TCGA-86-8673-01 1 186295304 186295304 C A TPR Missense_Mutation p.G1985C 0.34 probably_damaging(0.965) TCGA-86-8673-01 1 197071166 197071166 C A ASPM Missense_Mutation p.K2405N 0.50 deleterious(0.02) possibly_damaging(0.697) TCGA-86-8673-01 1 198697542 198697542 C G PTPRC Silent p.L598L 0.11 TCGA-86-8673-01 1 200143397 200143397 G T NR5A2 3'UTR 0.09 TCGA-86-8673-01 1 200818379 200818379 G T CAMSAP2 Nonsense_Mutation p.G828* 0.51 TCGA-86-8673-01 1 200818380 200818380 G T CAMSAP2 Missense_Mutation p.G828V 0.51 tolerated(0.61) benign(0.009) TCGA-86-8673-01 1 202104902 202104902 T A ARL8A Missense_Mutation p.E102V 0.06 deleterious(0.01) possibly_damaging(0.632) TCGA-86-8673-01 1 205116853 205116853 G A DSTYK Missense_Mutation p.P875S 0.30 tolerated(0.09) benign(0.021) TCGA-86-8673-01 1 215342691 215342691 G T KCNK2 Missense_Mutation p.D209Y 0.32 deleterious(0.04) benign(0.014) TCGA-86-8673-01 1 220356108 220356108 C T RAB3GAP2 Missense_Mutation p.D722N 0.19 tolerated(0.08) benign(0.062) TCGA-86-8673-01 1 227152884 227152884 G T ADCK3 Missense_Mutation p.A121S 0.46 tolerated_low_confidence(0.42) benign(0.005) TCGA-86-8673-01 1 237777859 237777859 G A RYR2 Missense_Mutation p.G1811R 0.15 probably_damaging(1) TCGA-86-8673-01 1 237947600 237947600 C A RYR2 Silent p.T4196T 0.06 TCGA-86-8673-01 1 246078839 246078839 T - SMYD3 Frame_Shift_Del p.Q269Rfs*8 0.25 TCGA-86-8673-01 1 247582261 247582261 C A NLRP3 Silent p.A55A 0.19 TCGA-86-8673-01 1 247588624 247588624 C A NLRP3 Missense_Mutation p.Q627K 0.20 tolerated(0.11) possibly_damaging(0.9) TCGA-86-8673-01 1 247737479 247737479 G T GCSAML Missense_Mutation p.C68F 0.32 deleterious(0) possibly_damaging(0.899) TCGA-86-8673-01 1 247902249 247902249 C A OR14K1 Silent p.G111G 0.12 TCGA-86-8673-01 1 248343515 248343515 C T OR2M2 Silent p.T76T 0.25 TCGA-86-8673-01 1 249152472 249152472 G T ZNF692 Silent p.R18R 0.20 TCGA-86-8673-01 1 27677309 27677309 C T SYTL1 Nonsense_Mutation p.Q344* 0.08 TCGA-86-8673-01 1 27878367 27878367 C T AHDC1 Missense_Mutation p.R87Q 0.36 tolerated_low_confidence(0.11) benign(0.025) TCGA-86-8673-01 1 29557445 29557445 A G MECR 5'Flank 0.26 TCGA-86-8673-01 1 34666555 34666555 T A C1orf94 Missense_Mutation p.F398I 0.18 tolerated_low_confidence(0.08) benign(0.053) TCGA-86-8673-01 1 55563724 55563724 A T USP24 Missense_Mutation p.N1829K 0.12 deleterious(0) probably_damaging(0.984) TCGA-86-8673-01 1 57233536 57233536 G A C1orf168 Silent p.S343S 0.15 TCGA-86-8673-01 1 68895514 68895514 G T RPE65 Missense_Mutation p.A516D 0.23 deleterious(0.02) probably_damaging(1) TCGA-86-8673-01 1 75229780 75229780 T A TYW3 Missense_Mutation p.F255I 0.07 deleterious_low_confidence(0.01) probably_damaging(0.923) TCGA-86-8673-01 1 7724090 7724090 G T CAMTA1 Missense_Mutation p.G495C 0.30 deleterious(0) probably_damaging(1) TCGA-86-8673-01 1 78269044 78269044 G T FAM73A Nonsense_Mutation p.G155* 0.19 TCGA-86-8673-01 1 89434416 89434416 A G CCBL2 Silent p.Y80Y 0.17 TCGA-86-8673-01 1 89847306 89847306 C T GBP6 Missense_Mutation p.P309S 0.06 deleterious(0) probably_damaging(0.998) TCGA-86-8673-01 1 91405102 91405102 C T ZNF644 Silent p.K603K 0.40 TCGA-86-8673-01 1 99157098 99157098 C T SNX7 Missense_Mutation p.P161L 0.36 deleterious(0) benign(0.405) TCGA-86-8673-01 20 21689918 21689918 C A PAX1 Missense_Mutation p.S373Y 0.13 tolerated_low_confidence(0.07) possibly_damaging(0.898) TCGA-86-8673-01 20 29993977 29993977 G T DEFB121 5'UTR 0.43 TCGA-86-8673-01 20 31571664 31571664 A T SUN5 Missense_Mutation p.V359E 0.41 deleterious(0) probably_damaging(0.951) TCGA-86-8673-01 20 33329481 33329481 T A NCOA6 Nonsense_Mutation p.K1527* 0.35 TCGA-86-8673-01 20 3759065 3759065 C T SPEF1 Intron 0.23 TCGA-86-8673-01 20 3846411 3846411 C A MAVS Missense_Mutation p.L414I 0.16 tolerated(0.16) benign(0.014) TCGA-86-8673-01 20 42694695 42694695 C A TOX2 Missense_Mutation p.P435H 0.31 deleterious(0.02) possibly_damaging(0.798) TCGA-86-8673-01 20 50090601 50090601 C T NFATC2 Missense_Mutation p.V542M 0.26 deleterious(0) probably_damaging(1) TCGA-86-8673-01 20 57766624 57766624 C T ZNF831 Nonsense_Mutation p.Q184* 0.05 TCGA-86-8673-01 20 61513664 61513664 C A DIDO1 Missense_Mutation p.R1215L 0.37 probably_damaging(0.998) TCGA-86-8673-01 20 9346110 9346110 G T PLCB4 Missense_Mutation p.W151L 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-86-8673-01 20 9346111 9346111 G A PLCB4 Nonsense_Mutation p.W151* 0.22 TCGA-86-8673-01 21 19713789 19713789 C T TMPRSS15 Missense_Mutation p.C502Y 0.19 deleterious(0) probably_damaging(1) TCGA-86-8673-01 21 27945290 27945290 G T CYYR1 5'UTR 0.18 TCGA-86-8673-01 21 30304976 30304976 C A LTN1 Missense_Mutation p.R1675L 0.16 deleterious(0.04) benign(0.306) TCGA-86-8673-01 21 31988907 31988907 C G KRTAP20-1 Missense_Mutation p.S45C 0.10 unknown(0) TCGA-86-8673-01 21 35514759 35514759 G C MRPS6 Silent p.V79V 0.12 TCGA-86-8673-01 21 35514760 35514760 G T MRPS6 Nonsense_Mutation p.E80* 0.12 TCGA-86-8673-01 21 37833438 37833457 GGCAGGACAGGCAAAGCAGG - CLDN14 Frame_Shift_Del p.L180Gfs*95 0.19 TCGA-86-8673-01 21 45666390 45666390 G T DNMT3L Missense_Mutation p.Q352K 0.09 tolerated(0.45) benign(0.004) TCGA-86-8673-01 21 45861697 45861697 C A TRPM2 Nonsense_Mutation p.Y1503* 0.12 TCGA-86-8673-01 22 17073351 17073351 C T CCT8L2 Silent p.E30E 0.17 TCGA-86-8673-01 22 18082862 18082862 C A ATP6V1E1 Splice_Site p.X123_splice 0.15 TCGA-86-8673-01 22 18301711 18301711 G A MICAL3 Missense_Mutation p.P1239L 0.19 benign(0.004) TCGA-86-8673-01 22 21288427 21288427 G T CRKL Silent p.G224G 0.27 TCGA-86-8673-01 22 21288428 21288428 G T CRKL Missense_Mutation p.A225S 0.27 tolerated(0.37) benign(0.339) TCGA-86-8673-01 22 22735598 22735598 C A IGLV1-44 Missense_Mutation p.P79T 0.15 tolerated_low_confidence(0.07) probably_damaging(0.93) TCGA-86-8673-01 22 22735599 22735599 C A IGLV1-44 Missense_Mutation p.P79H 0.15 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-86-8673-01 22 32620340 32620340 G T SLC5A4 Missense_Mutation p.L527M 0.15 deleterious(0.04) benign(0.042) TCGA-86-8673-01 22 43619185 43619185 G A SCUBE1 Silent p.P415P 0.18 TCGA-86-8673-01 22 45689110 45689110 G A UPK3A Missense_Mutation p.G207D 0.15 deleterious(0) probably_damaging(0.961) TCGA-86-8673-01 22 46790129 46790129 C A CELSR1 Missense_Mutation p.W1958C 0.21 deleterious(0) probably_damaging(0.995) TCGA-86-8673-01 22 50941794 50941794 C A LMF2 3'UTR 0.18 TCGA-86-8673-01 2 101581359 101581359 A C NPAS2 Missense_Mutation p.T252P 0.18 deleterious(0) probably_damaging(0.999) TCGA-86-8673-01 2 101670625 101670625 C A TBC1D8 Missense_Mutation p.W177C 0.22 deleterious(0) probably_damaging(0.986) TCGA-86-8673-01 2 103324619 103324619 G T SLC9A2 Missense_Mutation p.V704L 0.17 tolerated(0.25) benign(0.074) TCGA-86-8673-01 2 106717527 106717527 C A UXS1 Missense_Mutation p.S324I 0.21 tolerated(0.05) benign(0.251) TCGA-86-8673-01 2 125671709 125671709 C T CNTNAP5 Silent p.I1255I 0.15 TCGA-86-8673-01 2 136567373 136567373 G T LCT Silent p.L848L 0.25 TCGA-86-8673-01 2 141459797 141459797 C T LRP1B Missense_Mutation p.G2072E 0.12 probably_damaging(0.931) TCGA-86-8673-01 2 155099354 155099354 G C GALNT13 Missense_Mutation p.D208H 0.26 deleterious(0) probably_damaging(0.999) TCGA-86-8673-01 2 163174536 163174536 G A IFIH1 Silent p.Y94Y 0.11 TCGA-86-8673-01 2 163374311 163374311 G A KCNH7 Missense_Mutation p.S274F 0.15 deleterious(0) probably_damaging(0.993) TCGA-86-8673-01 2 165551805 165551805 A G COBLL1 Silent p.S737S 0.27 TCGA-86-8673-01 2 168107643 168107643 T C XIRP2 Silent p.A3247A 0.20 TCGA-86-8673-01 2 171572855 171572855 G - SP5 Frame_Shift_Del p.G47Afs*48 0.16 TCGA-86-8673-01 2 173341165 173341165 G - ITGA6 Frame_Shift_Del p.G438Efs*22 0.09 TCGA-86-8673-01 2 179451844 179451844 C G TTN Splice_Site p.X21365_splice 0.14 TCGA-86-8673-01 2 185802775 185802775 C A ZNF804A Missense_Mutation p.N884K 0.17 tolerated(0.36) benign(0.004) TCGA-86-8673-01 2 202002694 202002694 C T CFLAR Intron 0.21 TCGA-86-8673-01 2 204045223 204045223 G T NBEAL1 Nonsense_Mutation p.E2166* 0.31 TCGA-86-8673-01 2 207175955 207175955 C A ZDBF2 Missense_Mutation p.R2235S 0.12 tolerated(0.11) benign(0.008) TCGA-86-8673-01 2 207636950 207636950 A T FASTKD2 Missense_Mutation p.Q387L 0.15 tolerated(0.05) possibly_damaging(0.632) TCGA-86-8673-01 2 208986409 208986409 T C CRYGD Missense_Mutation p.I171M 0.10 tolerated(0.9) benign(0.002) TCGA-86-8673-01 2 210867356 210867356 G C RPE 5'UTR 0.17 TCGA-86-8673-01 2 21235520 21235520 G A APOB Missense_Mutation p.S1407F 0.17 probably_damaging(0.996) TCGA-86-8673-01 2 218954043 218954043 G A RUFY4 Missense_Mutation p.C544Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-86-8673-01 2 219754887 219754887 G T WNT10A Missense_Mutation p.K186N 0.12 tolerated(0.12) possibly_damaging(0.864) TCGA-86-8673-01 2 220285065 220285065 A T DES Missense_Mutation p.E244D 0.16 tolerated(0.52) benign(0.006) TCGA-86-8673-01 2 220406452 220406452 T A CHPF Missense_Mutation p.Q258H 0.17 tolerated(0.12) benign(0.001) TCGA-86-8673-01 2 242063447 242063447 C A PASK Missense_Mutation p.A941S 0.25 tolerated(0.07) benign(0.002) TCGA-86-8673-01 2 242741257 242741257 A T GAL3ST2 Nonsense_Mutation p.K61* 0.17 TCGA-86-8673-01 2 242793142 242793142 C A PDCD1 3'UTR 0.22 TCGA-86-8673-01 2 24888729 24888729 C G NCOA1 Missense_Mutation p.C67W 0.16 deleterious(0) probably_damaging(0.999) TCGA-86-8673-01 2 277071 277071 G C ACP1 Missense_Mutation p.E129Q 0.24 tolerated(0.16) possibly_damaging(0.867) TCGA-86-8673-01 2 33412023 33412023 C A LTBP1 Silent p.V434V 0.21 TCGA-86-8673-01 2 54895572 54895576 CCAGC - SPTBN1 Frame_Shift_Del p.P2321Ifs*58 0.11 TCGA-86-8673-01 2 61188604 61188604 C G PUS10 Missense_Mutation p.V290L 0.17 tolerated(0.25) benign(0.172) TCGA-86-8673-01 2 64682545 64682545 G T LGALSL Missense_Mutation p.R35L 0.21 tolerated(0.17) benign(0.004) TCGA-86-8673-01 2 64819085 64819085 C T AFTPH Silent p.D909D 0.23 TCGA-86-8673-01 2 69049865 69049865 C A ARHGAP25 Missense_Mutation p.L532I 0.22 tolerated(0.46) benign(0.108) TCGA-86-8673-01 2 70444005 70444005 C G TIA1 Intron 0.03 TCGA-86-8673-01 2 71781056 71781056 C A DYSF Silent p.R702R 0.16 TCGA-86-8673-01 2 73268005 73268005 C A SFXN5 Missense_Mutation p.R76L 0.21 tolerated(0.08) benign(0.01) TCGA-86-8673-01 2 77746756 77746756 T A LRRTM4 Missense_Mutation p.Q80L 0.21 deleterious(0) probably_damaging(0.997) TCGA-86-8673-01 2 80831201 80831201 G T CTNNA2 Missense_Mutation p.G731V 0.16 deleterious(0) probably_damaging(0.998) TCGA-86-8673-01 2 80874886 80874886 G T CTNNA2 Silent p.V869V 0.20 TCGA-86-8673-01 2 85573145 85573145 A G RETSAT Missense_Mutation p.F357S 0.15 deleterious(0) benign(0.064) TCGA-86-8673-01 2 86437737 86437737 G T MRPL35 Missense_Mutation p.W171C 0.36 deleterious(0.03) probably_damaging(0.99) TCGA-86-8673-01 2 88422633 88422633 A C FABP1 Intron 0.20 TCGA-86-8673-01 2 90122112 90122112 T A IGKV1D-17 Nonsense_Mutation p.C110* 0.11 TCGA-86-8673-01 2 96963377 96963377 C T SNRNP200 Missense_Mutation p.E401K 0.04 tolerated(0.67) benign(0.001) TCGA-86-8673-01 2 96993645 96993645 A G ITPRIPL1 Missense_Mutation p.I434V 0.09 tolerated(0.33) benign(0.002) TCGA-86-8673-01 2 99006234 99006234 G A CNGA3 Missense_Mutation p.C188Y 0.14 deleterious(0) benign(0.048) TCGA-86-8673-01 2 99013748 99013748 G T CNGA3 3'UTR 0.17 TCGA-86-8673-01 3 100951705 100951705 C A IMPG2 Missense_Mutation p.Q1051H 0.11 deleterious(0.01) probably_damaging(0.976) TCGA-86-8673-01 3 109049385 109049385 G A DPPA4 Missense_Mutation p.P222L 0.12 tolerated(0.14) benign(0.125) TCGA-86-8673-01 3 111325713 111325713 A T CD96 Intron 0.32 TCGA-86-8673-01 3 111993742 111993742 A T SLC9C1 Splice_Site p.X205_splice 0.17 TCGA-86-8673-01 3 113122856 113122856 G A WDR52 Missense_Mutation p.S338L 0.16 deleterious(0) probably_damaging(0.943) TCGA-86-8673-01 3 122667547 122667547 G A SEMA5B Missense_Mutation p.P99L 0.26 deleterious_low_confidence(0.01) benign(0) TCGA-86-8673-01 3 123014951 123014951 C A ADCY5 Missense_Mutation p.D1015Y 0.16 deleterious(0) probably_damaging(0.993) TCGA-86-8673-01 3 125271280 125271280 C A OSBPL11 Nonsense_Mutation p.E467* 0.22 TCGA-86-8673-01 3 127540591 127540591 T C MGLL Missense_Mutation p.N34S 0.12 tolerated(0.08) probably_damaging(0.934) TCGA-86-8673-01 3 13417890 13417890 C T NUP210 Silent p.E398E 0.15 TCGA-86-8673-01 3 13663285 13663285 G T FBLN2 Missense_Mutation p.E722D 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-86-8673-01 3 137811301 137811301 C A DZIP1L Missense_Mutation p.G265V 0.12 tolerated(0.05) possibly_damaging(0.886) TCGA-86-8673-01 3 138340358 138340358 C A FAIM Silent p.R64R 0.11 TCGA-86-8673-01 3 151017940 151017940 G A GPR87 5'UTR 0.16 TCGA-86-8673-01 3 151102937 151102937 A G MED12L Silent p.K1647K 0.09 TCGA-86-8673-01 3 151535367 151535367 G T AADAC Nonsense_Mutation p.G118* 0.20 TCGA-86-8673-01 3 155481514 155481514 A G C3orf33 Missense_Mutation p.L183S 0.31 tolerated(0.37) benign(0.045) TCGA-86-8673-01 3 16216776 16216776 C A GALNT15 Missense_Mutation p.L40M 0.20 tolerated_low_confidence(0.08) benign(0.259) TCGA-86-8673-01 3 164709251 164709251 G C SI Silent p.G1666G 0.22 TCGA-86-8673-01 3 179298699 179298699 C G ACTL6A Missense_Mutation p.P283R 0.13 deleterious(0) probably_damaging(0.991) TCGA-86-8673-01 3 179501900 179501900 A C USP13 Missense_Mutation p.M855L 0.04 tolerated(1) benign(0.001) TCGA-86-8673-01 3 188123966 188123966 C T LPP Missense_Mutation p.P20S 0.18 tolerated(0.21) benign(0.001) TCGA-86-8673-01 3 194079932 194079932 G T LRRC15 3'UTR 0.17 TCGA-86-8673-01 3 196134245 196134245 T G UBXN7 Silent p.G31G 0.14 TCGA-86-8673-01 3 196134253 196134253 T C UBXN7 Missense_Mutation p.S29G 0.13 tolerated(0.15) benign(0.079) TCGA-86-8673-01 3 196134259 196134259 T A UBXN7 Missense_Mutation p.S27C 0.11 deleterious(0.03) possibly_damaging(0.524) TCGA-86-8673-01 3 37574849 37574849 G T ITGA9 Missense_Mutation p.G473V 0.19 tolerated(0.32) benign(0.002) TCGA-86-8673-01 3 38629035 38629035 C A SCN5A Missense_Mutation p.M764I 0.08 deleterious(0) benign(0.209) TCGA-86-8673-01 3 38833651 38833651 C A SCN10A Missense_Mutation p.M93I 0.17 tolerated(1) benign(0.02) TCGA-86-8673-01 3 40231856 40231856 C A MYRIP Silent p.R523R 0.21 TCGA-86-8673-01 3 42739109 42739109 G T HHATL Silent p.G252G 0.13 TCGA-86-8673-01 3 46904838 46904838 C A MYL3 Missense_Mutation p.A15S 0.17 tolerated_low_confidence(0.75) unknown(0) TCGA-86-8673-01 3 48627690 48627690 C G COL7A1 Missense_Mutation p.R669P 0.26 unknown(0) TCGA-86-8673-01 3 49160414 49160414 A T LAMB2 Missense_Mutation p.D1432E 0.16 tolerated(0.56) benign(0.02) TCGA-86-8673-01 3 49322306 49322306 A G USP4 Silent p.L749L 0.16 TCGA-86-8673-01 3 49362161 49362161 T G USP4 Silent p.T223T 0.19 TCGA-86-8673-01 3 49893937 49893937 G T TRAIP 5'UTR 0.24 TCGA-86-8673-01 3 52563211 52563211 G A NT5DC2 Silent p.P124P 0.13 TCGA-86-8673-01 3 52720010 52720010 G T GNL3 5'UTR 0.36 TCGA-86-8673-01 3 56653517 56653517 G A CCDC66 Missense_Mutation p.G866E 0.17 deleterious(0) benign(0.023) TCGA-86-8673-01 3 62570900 62570900 C A CADPS Missense_Mutation p.A513S 0.15 tolerated(0.12) benign(0.364) TCGA-86-8673-01 3 6903369 6903369 C A GRM7 Missense_Mutation p.N98K 0.34 deleterious(0.03) probably_damaging(0.998) TCGA-86-8673-01 3 77666821 77666821 G T ROBO2 Missense_Mutation p.A1167S 0.17 tolerated(0.17) benign(0.364) TCGA-86-8673-01 3 86010619 86010619 G T CADM2 Silent p.L257L 0.18 TCGA-86-8673-01 3 9074335 9074335 T A SRGAP3 Missense_Mutation p.K513M 0.17 deleterious(0) benign(0.241) TCGA-86-8673-01 4 114280154 114280154 A T ANK2 Silent p.T3460T 0.21 TCGA-86-8673-01 4 141591909 141591909 C A TBC1D9 Nonsense_Mutation p.E411* 0.26 TCGA-86-8673-01 4 148539142 148539142 A T TMEM184C Missense_Mutation p.Q12L 0.26 tolerated(0.85) benign(0.001) TCGA-86-8673-01 4 152212365 152212365 T G PRSS48 Silent p.P249P 0.20 TCGA-86-8673-01 4 155156023 155156023 G T DCHS2 Missense_Mutation p.H2806N 0.43 tolerated(0.39) benign(0.01) TCGA-86-8673-01 4 159756623 159756623 G C FNIP2 Missense_Mutation p.R241P 0.14 deleterious(0.03) possibly_damaging(0.761) TCGA-86-8673-01 4 164534585 164534585 G T MARCH1 Intron 0.29 TCGA-86-8673-01 4 172735706 172735706 A T GALNTL6 5'UTR 0.14 TCGA-86-8673-01 4 187627905 187627905 T A FAT1 Missense_Mutation p.N1026I 0.23 probably_damaging(0.998) TCGA-86-8673-01 4 187630811 187630811 G C FAT1 Silent p.V57V 0.11 TCGA-86-8673-01 4 20568908 20568908 G T SLIT2 Missense_Mutation p.A917S 0.13 tolerated(0.23) possibly_damaging(0.676) TCGA-86-8673-01 4 38775277 38775277 A T TLR10 Silent p.S645S 0.14 TCGA-86-8673-01 4 46930459 46930459 A G GABRA4 Missense_Mutation p.L483P 0.16 tolerated_low_confidence(0.09) probably_damaging(1) TCGA-86-8673-01 4 48565967 48565967 G T FRYL Missense_Mutation p.N1198K 0.25 tolerated(0.22) possibly_damaging(0.67) TCGA-86-8673-01 4 56233825 56233825 C T SRD5A3 Silent p.I211I 0.17 TCGA-86-8673-01 4 69796394 69796394 G T UGT2A3 Missense_Mutation p.P392T 0.15 deleterious(0) probably_damaging(0.981) TCGA-86-8673-01 4 70071280 70071280 C A UGT2B11 Silent p.L336L 0.29 TCGA-86-8673-01 4 70620405 70620405 G - SULT1B1 Frame_Shift_Del p.P87Lfs*3 0.20 TCGA-86-8673-01 4 79437101 79437101 T C FRAS1 Silent p.F3441F 0.30 TCGA-86-8673-01 4 87692397 87692397 A C PTPN13 Missense_Mutation p.Q1631P 0.14 tolerated(0.26) benign(0.011) TCGA-86-8673-01 4 88731816 88731816 C T IBSP Missense_Mutation p.A102V 0.38 deleterious(0.03) possibly_damaging(0.811) TCGA-86-8673-01 4 90170573 90170573 G C GPRIN3 Missense_Mutation p.S230C 0.23 deleterious(0.01) possibly_damaging(0.759) TCGA-86-8673-01 5 101631710 101631710 C G SLCO4C1 Missense_Mutation p.G86A 0.24 tolerated(0.32) probably_damaging(0.998) TCGA-86-8673-01 5 112439909 112439909 G A MCC Missense_Mutation p.H391Y 0.10 tolerated(0.16) probably_damaging(0.946) TCGA-86-8673-01 5 115320330 115320330 C T AQPEP Missense_Mutation p.P301L 0.15 tolerated(0.87) possibly_damaging(0.788) TCGA-86-8673-01 5 115803298 115803298 A T SEMA6A Missense_Mutation p.H625Q 0.14 tolerated(0.45) benign(0.002) TCGA-86-8673-01 5 118483055 118483055 G T DMXL1 Missense_Mutation p.R934I 0.25 tolerated(0.35) possibly_damaging(0.66) TCGA-86-8673-01 5 127705001 127705001 C A FBN2 Nonsense_Mutation p.G708* 0.19 TCGA-86-8673-01 5 129241281 129241281 G T CHSY3 Missense_Mutation p.K253N 0.18 tolerated(0.12) benign(0.008) TCGA-86-8673-01 5 139905686 139905686 C G ANKHD1 Missense_Mutation p.A1533G 0.14 probably_damaging(0.985) TCGA-86-8673-01 5 139905705 139905705 C G ANKHD1 Silent p.P1539P 0.16 TCGA-86-8673-01 5 140188092 140188092 T A PCDHA4 Missense_Mutation p.S440R 0.25 tolerated_low_confidence(0.12) benign(0.05) TCGA-86-8673-01 5 140720219 140720219 G C PCDHGA2 Missense_Mutation p.E561Q 0.21 deleterious_low_confidence(0) possibly_damaging(0.882) TCGA-86-8673-01 5 140725397 140725397 C A PCDHGA3 Silent p.G599G 0.18 TCGA-86-8673-01 5 140755487 140755487 G T PCDHGA6 Nonsense_Mutation p.E613* 0.15 TCGA-86-8673-01 5 140788037 140788037 A G PCDHGB6 Missense_Mutation p.I90V 0.24 deleterious(0.04) possibly_damaging(0.51) TCGA-86-8673-01 5 14678875 14678875 T C FAM105B Silent p.C105C 0.09 TCGA-86-8673-01 5 156376712 156376712 C T TIMD4 Nonsense_Mutation p.W237* 0.27 TCGA-86-8673-01 5 15937147 15937147 G A FBXL7 Missense_Mutation p.G443D 0.10 tolerated(1) possibly_damaging(0.711) TCGA-86-8673-01 5 160061523 160061523 C A ATP10B Nonsense_Mutation p.E407* 0.23 TCGA-86-8673-01 5 161292749 161292749 T C GABRA1 Silent p.T70T 0.19 TCGA-86-8673-01 5 167689187 167689187 C A TENM2 Missense_Mutation p.P2566H 0.14 deleterious(0) probably_damaging(0.947) TCGA-86-8673-01 5 170667939 170667939 G T RANBP17 Missense_Mutation p.Q810H 0.16 tolerated(0.13) probably_damaging(0.986) TCGA-86-8673-01 5 170814964 170814964 G C NPM1 Silent p.S4S 0.05 TCGA-86-8673-01 5 171520763 171520763 C T STK10 Missense_Mutation p.G403S 0.14 tolerated(0.27) benign(0.154) TCGA-86-8673-01 5 17354012 17354012 G T CTD-2139B15.2 5'Flank 0.34 TCGA-86-8673-01 5 176301267 176301267 A T UNC5A Missense_Mutation p.N360Y 0.20 deleterious(0) possibly_damaging(0.486) TCGA-86-8673-01 5 179193241 179193241 G T MAML1 Missense_Mutation p.Q410H 0.21 tolerated(0.16) possibly_damaging(0.564) TCGA-86-8673-01 5 180416030 180416030 T C BTNL3 Translation_Start_Site p.M1? 0.19 deleterious_low_confidence(0) benign(0.403) TCGA-86-8673-01 5 205501 205501 T G CCDC127 Silent p.R232R 0.12 TCGA-86-8673-01 5 31294296 31294296 C A CDH6 Silent p.I152I 0.11 TCGA-86-8673-01 5 33577137 33577137 A G ADAMTS12 Silent p.S998S 0.10 TCGA-86-8673-01 5 33624396 33624396 G - ADAMTS12 Frame_Shift_Del p.L695Wfs*10 0.12 TCGA-86-8673-01 5 35753738 35753738 C T SPEF2 Missense_Mutation p.R1115C 0.05 deleterious(0) probably_damaging(0.996) TCGA-86-8673-01 5 37170183 37170183 C T C5orf42 Missense_Mutation p.G2141E 0.37 tolerated(0.46) benign(0.033) TCGA-86-8673-01 5 42804847 42804847 A T SEPP1 Missense_Mutation p.L149M 0.10 tolerated(0.05) probably_damaging(0.962) TCGA-86-8673-01 5 43628435 43628436 TT - NNT Frame_Shift_Del p.F304Cfs*19 0.08 TCGA-86-8673-01 5 44388607 44388607 G T FGF10 Missense_Mutation p.P60T 0.16 tolerated(0.06) benign(0.003) TCGA-86-8673-01 5 5209325 5209325 A T ADAMTS16 Missense_Mutation p.E524V 0.11 tolerated(0.09) benign(0.118) TCGA-86-8673-01 5 54420658 54420658 T A CDC20B Missense_Mutation p.K396N 0.20 tolerated(0.06) benign(0.004) TCGA-86-8673-01 5 75919021 75919021 A T F2RL2 Missense_Mutation p.L12Q 0.22 deleterious(0) benign(0.022) TCGA-86-8673-01 5 76173686 76173686 G T S100Z Intron 0.16 TCGA-86-8673-01 5 76249912 76249912 G T CRHBP Missense_Mutation p.Q78H 0.17 deleterious(0.04) possibly_damaging(0.894) TCGA-86-8673-01 5 79031474 79031474 G T CMYA5 Missense_Mutation p.G2296C 0.26 benign(0.431) TCGA-86-8673-01 5 80638514 80638514 C - ACOT12 Frame_Shift_Del p.E369Rfs*9 0.19 TCGA-86-8673-01 6 100960719 100960719 C G ASCC3 Missense_Mutation p.E2051Q 0.11 tolerated(0.3) benign(0.013) TCGA-86-8673-01 6 106547289 106547289 T A PRDM1 Missense_Mutation p.C176S 0.25 deleterious(0) probably_damaging(0.931) TCGA-86-8673-01 6 111636510 111636510 G A REV3L Missense_Mutation p.T2809I 0.17 deleterious(0) probably_damaging(1) TCGA-86-8673-01 6 116427440 116427440 A - NT5DC1 Frame_Shift_Del p.K43Rfs*12 0.19 TCGA-86-8673-01 6 132270526 132270526 C A CTGF Missense_Mutation p.G310C 0.44 deleterious(0) probably_damaging(1) TCGA-86-8673-01 6 133049980 133049980 C T VNN3 Missense_Mutation p.C146Y 0.15 deleterious(0.01) possibly_damaging(0.905) TCGA-86-8673-01 6 151089793 151089793 G - PLEKHG1 Frame_Shift_Del p.D145Tfs*43 0.16 TCGA-86-8673-01 6 161137705 161137705 T C PLG Missense_Mutation p.Y233H 0.22 deleterious(0.01) probably_damaging(0.971) TCGA-86-8673-01 6 26108235 26108235 C G HIST1H1T Silent p.P29P 0.22 TCGA-86-8673-01 6 26597232 26597232 A T ABT1 Nonsense_Mutation p.K8* 0.17 TCGA-86-8673-01 6 28554222 28554222 G A SCAND3 Silent p.I91I 0.15 TCGA-86-8673-01 6 30587585 30587585 T G MRPS18B Splice_Site p.X95_splice 0.20 TCGA-86-8673-01 6 3850198 3850198 G A FAM50B Silent p.A51A 0.16 TCGA-86-8673-01 6 3850461 3850461 C G FAM50B Missense_Mutation p.A139G 0.19 tolerated(0.14) benign(0.005) TCGA-86-8673-01 6 38891801 38891801 C A DNAH8 Missense_Mutation p.L3392I 0.30 probably_damaging(0.99) TCGA-86-8673-01 6 42942679 42942679 G A PEX6 Missense_Mutation p.S327F 0.12 deleterious(0.04) benign(0.396) TCGA-86-8673-01 6 43322685 43322685 G A ZNF318 Missense_Mutation p.A796V 0.17 probably_damaging(0.991) TCGA-86-8673-01 6 52380870 52380870 A C TRAM2 Missense_Mutation p.N115K 0.06 deleterious(0.01) probably_damaging(0.942) TCGA-86-8673-01 6 53785559 53785559 G T LRRC1 Silent p.T472T 0.22 TCGA-86-8673-01 6 56481691 56481691 C T DST Intron 0.19 TCGA-86-8673-01 6 79577188 79577188 C T IRAK1BP1 5'Flank 0.16 TCGA-86-8673-01 6 88229394 88229394 C T RARS2 Missense_Mutation p.G382R 0.15 deleterious(0) probably_damaging(0.997) TCGA-86-8673-01 6 97338974 97338974 T A NDUFAF4 3'UTR 0.36 TCGA-86-8673-01 7 100184221 100184221 C T FBXO24 5'Flank 0.40 TCGA-86-8673-01 7 100187591 100187591 C T FBXO24 Intron 0.03 TCGA-86-8673-01 7 100320700 100320700 C A EPO Missense_Mutation p.L176I 0.34 deleterious(0.03) possibly_damaging(0.64) TCGA-86-8673-01 7 100320701 100320701 T A EPO Missense_Mutation p.L176H 0.34 deleterious(0) probably_damaging(1) TCGA-86-8673-01 7 100694912 100694912 C A MUC17 Missense_Mutation p.T4298N 0.07 unknown(0) TCGA-86-8673-01 7 100841639 100841639 A G MOGAT3 Silent p.C167C 0.13 TCGA-86-8673-01 7 100859584 100859584 C A PLOD3 Missense_Mutation p.S121I 0.30 deleterious(0) benign(0.125) TCGA-86-8673-01 7 103969439 103969439 G T LHFPL3 Missense_Mutation p.G71V 0.27 deleterious(0) probably_damaging(1) TCGA-86-8673-01 7 104377162 104377162 C A LHFPL3 Silent p.G162G 0.39 TCGA-86-8673-01 7 105148651 105148651 G C PUS7 Missense_Mutation p.D103E 0.14 tolerated(0.14) benign(0.007) TCGA-86-8673-01 7 119914885 119914885 C G KCND2 Missense_Mutation p.L67V 0.10 deleterious(0) probably_damaging(0.998) TCGA-86-8673-01 7 121644667 121644667 G C PTPRZ1 Splice_Site p.X414_splice 0.33 TCGA-86-8673-01 7 1273287 1273287 G T UNCX Nonsense_Mutation p.E136* 0.27 TCGA-86-8673-01 7 132470374 132470374 G A CHCHD3 3'UTR 0.07 TCGA-86-8673-01 7 135123092 135123092 T G CNOT4 5'UTR 0.14 TCGA-86-8673-01 7 142104545 142104545 G T TRBV6-9 Silent p.I3I 0.35 TCGA-86-8673-01 7 142149090 142149090 C G TRBV5-5 Missense_Mutation p.G61R 0.34 deleterious(0.02) possibly_damaging(0.573) TCGA-86-8673-01 7 142176517 142176517 C A TRBV7-4 Missense_Mutation p.W53C 0.20 deleterious(0.02) possibly_damaging(0.887) TCGA-86-8673-01 7 142561960 142561960 G T EPHB6 Missense_Mutation p.Q134H 0.27 deleterious(0) probably_damaging(0.996) TCGA-86-8673-01 7 142570226 142570226 C A TRPV6 Silent p.V598V 0.22 TCGA-86-8673-01 7 143029589 143029589 C A CLCN1 Missense_Mutation p.A415D 0.11 deleterious(0) probably_damaging(0.998) TCGA-86-8673-01 7 143400309 143400309 G T FAM115C Missense_Mutation p.L74F 0.25 tolerated(0.47) benign(0.244) TCGA-86-8673-01 7 14661064 14661064 A T DGKB Missense_Mutation p.V409E 0.09 tolerated(0.28) benign(0.017) TCGA-86-8673-01 7 149496933 149496933 G C SSPO RNA 0.28 TCGA-86-8673-01 7 150714319 150714319 C A ATG9B Missense_Mutation p.R698L 0.08 deleterious(0.02) possibly_damaging(0.692) TCGA-86-8673-01 7 151945156 151945156 G A KMT2C Missense_Mutation p.S788F 0.03 benign(0.418) TCGA-86-8673-01 7 15725970 15725970 G A MEOX2 Missense_Mutation p.H20Y 0.37 tolerated(0.05) probably_damaging(0.932) TCGA-86-8673-01 7 17378929 17378929 A G AHR Missense_Mutation p.R494G 0.25 tolerated(0.44) benign(0.001) TCGA-86-8673-01 7 17378938 17378938 C G AHR Missense_Mutation p.Q497E 0.25 tolerated(0.18) benign(0.018) TCGA-86-8673-01 7 20199089 20199089 C - MACC1 Frame_Shift_Del p.D299Ifs*7 0.20 TCGA-86-8673-01 7 21904225 21904225 C T DNAH11 Missense_Mutation p.H3823Y 0.08 benign(0.001) TCGA-86-8673-01 7 27141754 27141754 G T HOXA2 Silent p.T122T 0.52 TCGA-86-8673-01 7 30793416 30793416 G T INMT Missense_Mutation p.C75F 0.24 deleterious(0) probably_damaging(1) TCGA-86-8673-01 7 31117633 31117633 C A ADCYAP1R1 Missense_Mutation p.T62K 0.36 deleterious(0) probably_damaging(0.983) TCGA-86-8673-01 7 39504087 39504087 T G POU6F2 Missense_Mutation p.F626L 0.20 deleterious(0.02) unknown(0) TCGA-86-8673-01 7 42079717 42079717 G A GLI3 Silent p.S316S 0.12 TCGA-86-8673-01 7 43916225 43916225 C A URGCP 3'UTR 0.14 TCGA-86-8673-01 7 47814513 47814513 C A PKD1L1 3'UTR 0.38 TCGA-86-8673-01 7 47894536 47894536 T C PKD1L1 Missense_Mutation p.I1601M 0.13 deleterious(0.04) probably_damaging(0.922) TCGA-86-8673-01 7 49951882 49951882 G A VWC2 3'UTR 0.40 TCGA-86-8673-01 7 50771536 50771536 G T GRB10 Silent p.R41R 0.04 TCGA-86-8673-01 7 53103529 53103529 G T POM121L12 Silent p.L55L 0.20 TCGA-86-8673-01 7 53103616 53103616 G A POM121L12 Silent p.Q84Q 0.09 TCGA-86-8673-01 7 53104106 53104106 T C POM121L12 Missense_Mutation p.C248R 0.23 tolerated(0.1) probably_damaging(0.919) TCGA-86-8673-01 7 55872959 55872959 C T SEPT14 Missense_Mutation p.E371K 0.08 deleterious(0.02) benign(0.129) TCGA-86-8673-01 7 72742373 72742373 G T FKBP6 5'UTR 0.31 TCGA-86-8673-01 7 72903707 72903707 C A BAZ1B Silent p.V236V 0.14 TCGA-86-8673-01 7 75616888 75616888 T C POR 3'Flank 0.25 TCGA-86-8673-01 7 82584778 82584778 A T PCLO Missense_Mutation p.S1831T 0.13 unknown(0) TCGA-86-8673-01 7 87530165 87530165 G T DBF4 Missense_Mutation p.C299F 0.08 deleterious(0) probably_damaging(0.999) TCGA-86-8673-01 7 87760787 87760787 A T ADAM22 Intron 0.18 TCGA-86-8673-01 7 88964068 88964068 G A ZNF804B Missense_Mutation p.C591Y 0.29 tolerated(1) benign(0.003) TCGA-86-8673-01 7 927078 927078 C A GET4 Missense_Mutation p.L130M 0.04 deleterious(0.01) probably_damaging(0.961) TCGA-86-8673-01 7 99669538 99669538 T C ZNF3 Missense_Mutation p.H190R 0.10 deleterious(0) benign(0.005) TCGA-86-8673-01 8 10756239 10756239 C A XKR6 Missense_Mutation p.Q383H 0.19 tolerated(0.28) benign(0.022) TCGA-86-8673-01 8 113308163 113308163 G T CSMD3 Missense_Mutation p.T2838K 0.24 deleterious(0.01) probably_damaging(0.995) TCGA-86-8673-01 8 126071651 126071651 C A KIAA0196 Missense_Mutation p.G552V 0.19 deleterious(0.01) possibly_damaging(0.826) TCGA-86-8673-01 8 126445770 126445770 C G TRIB1 Missense_Mutation p.S191C 0.12 deleterious(0.03) benign(0.02) TCGA-86-8673-01 8 144296932 144296932 C A GPIHBP1 Missense_Mutation p.R76S 0.20 tolerated(1) benign(0.047) TCGA-86-8673-01 8 144993153 144993153 C A PLEC Silent p.R3749R 0.12 TCGA-86-8673-01 8 19218729 19218729 A T SH2D4A Nonsense_Mutation p.K204* 0.15 TCGA-86-8673-01 8 20110322 20110322 C A LZTS1 Missense_Mutation p.G374C 0.08 deleterious(0.01) possibly_damaging(0.495) TCGA-86-8673-01 8 2026979 2026979 C T MYOM2 Missense_Mutation p.A476V 0.16 tolerated(0.24) possibly_damaging(0.76) TCGA-86-8673-01 8 21978604 21978604 C A HR Missense_Mutation p.A781S 0.19 deleterious(0.03) probably_damaging(0.935) TCGA-86-8673-01 8 24339758 24339758 G T ADAM7 Missense_Mutation p.R270L 0.10 tolerated(0.12) benign(0.335) TCGA-86-8673-01 8 25718639 25718639 C G EBF2 Missense_Mutation p.G423A 0.19 tolerated(0.24) benign(0.06) TCGA-86-8673-01 8 37607997 37607997 G A ERLIN2 Silent p.A214A 0.15 TCGA-86-8673-01 8 52321543 52321543 C A PXDNL Missense_Mutation p.V881F 0.12 deleterious(0) possibly_damaging(0.81) TCGA-86-8673-01 8 56015096 56015096 C T XKR4 Silent p.D16D 0.20 TCGA-86-8673-01 8 69104607 69104607 G C PREX2 Missense_Mutation p.R1484P 0.11 deleterious(0) benign(0.01) TCGA-86-8673-01 8 77620129 77620129 G A ZFHX4 Missense_Mutation p.G980E 0.18 probably_damaging(0.969) TCGA-86-8673-01 8 8234170 8234170 G T SGK223 Silent p.P583P 0.18 TCGA-86-8673-01 8 85799899 85799899 A T RALYL Missense_Mutation p.E262V 0.12 deleterious(0.01) probably_damaging(0.951) TCGA-86-8673-01 8 97847387 97847387 T G CPQ Missense_Mutation p.V207G 0.18 deleterious(0) possibly_damaging(0.835) TCGA-86-8673-01 9 101817643 101817643 C A COL15A1 Missense_Mutation p.P1061T 0.37 deleterious(0) probably_damaging(0.992) TCGA-86-8673-01 9 101817644 101817644 C A COL15A1 Missense_Mutation p.P1061Q 0.36 deleterious(0.03) probably_damaging(0.994) TCGA-86-8673-01 9 104238474 104238476 TAT AA TMEM246 Frame_Shift_Del p.Y300Ffs*20 0.32 TCGA-86-8673-01 9 116186581 116186581 C G C9orf43 Missense_Mutation p.H264Q 0.13 tolerated(0.18) benign(0.329) TCGA-86-8673-01 9 121929770 121929770 A T BRINP1 Silent p.P626P 0.17 TCGA-86-8673-01 9 17394937 17394937 A T CNTLN Nonsense_Mutation p.K829* 0.23 TCGA-86-8673-01 9 34297038 34297038 T A KIF24 Silent p.P296P 0.40 TCGA-86-8673-01 9 84607159 84607159 C A SPATA31D1 Missense_Mutation p.L592I 0.30 tolerated(0.23) possibly_damaging(0.513) TCGA-86-8673-01 9 90499828 90499828 C G SPATA31E1 Missense_Mutation p.S142R 0.16 deleterious(0) possibly_damaging(0.892) TCGA-86-8673-01 9 96320933 96320933 G T FAM120A Silent p.A913A 0.18 TCGA-86-8673-01 X 102005160 102005160 A G BHLHB9 Missense_Mutation p.M413V 0.23 tolerated(0.62) benign(0.002) TCGA-86-8673-01 X 104440387 104440387 T A IL1RAPL2 Missense_Mutation p.S105T 0.28 deleterious(0.03) benign(0.05) TCGA-86-8673-01 X 108635216 108635216 G T GUCY2F Missense_Mutation p.P902H 0.29 deleterious(0) probably_damaging(0.95) TCGA-86-8673-01 X 134715514 134715514 C G DDX26B Missense_Mutation p.H847D 0.20 tolerated_low_confidence(0.26) unknown(0) TCGA-86-8673-01 X 144904117 144904117 G T SLITRK2 Missense_Mutation p.Q58H 0.30 tolerated(0.07) benign(0.002) TCGA-86-8673-01 X 144904178 144904178 C T SLITRK2 Missense_Mutation p.P79S 0.27 tolerated(0.85) benign(0.024) TCGA-86-8673-01 X 144905310 144905310 A G SLITRK2 Missense_Mutation p.Y456C 0.22 deleterious(0) probably_damaging(0.998) TCGA-86-8673-01 X 152226524 152226524 C G PNMA3 Missense_Mutation p.S371C 0.20 tolerated(0.2) benign(0.178) TCGA-86-8673-01 X 1531625 1531625 C G ASMTL Missense_Mutation p.G549R 0.13 deleterious(0.03) possibly_damaging(0.558) TCGA-86-8673-01 X 153221721 153221721 G C HCFC1 Missense_Mutation p.P926R 0.33 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-86-8673-01 X 1712781 1712781 G - AKAP17A Frame_Shift_Del p.E144Sfs*18 0.20 TCGA-86-8673-01 X 20029094 20029094 C G MAP7D2 Missense_Mutation p.D717H 0.26 deleterious(0) unknown(0) TCGA-86-8673-01 X 30268898 30268898 C A MAGEB1 Silent p.A96A 0.50 TCGA-86-8673-01 X 40513717 40513717 T A MED14 Missense_Mutation p.Q1397L 0.21 deleterious(0.05) possibly_damaging(0.576) TCGA-86-8673-01 X 53970627 53970627 C A PHF8 Silent p.G899G 0.49 TCGA-86-8673-01 X 54475348 54475348 T A FGD1 Missense_Mutation p.N776I 0.54 deleterious(0) probably_damaging(0.999) TCGA-86-8673-01 X 55040038 55040038 A T ALAS2 Missense_Mutation p.L494H 0.40 deleterious(0) probably_damaging(0.998) TCGA-86-8673-01 X 63488607 63488607 G A MTMR8 Missense_Mutation p.T642I 0.29 tolerated_low_confidence(0.28) unknown(0) TCGA-86-8673-01 X 64738075 64738075 C T LAS1L Silent p.E573E 0.27 TCGA-86-8673-01 X 72667550 72667550 A T CDX4 Missense_Mutation p.H154L 0.66 tolerated(0.06) probably_damaging(0.995) TCGA-86-8674-01 10 126477722 126477722 C A METTL10 Nonsense_Mutation p.G61* 0.15 TCGA-86-8674-01 10 129535891 129535891 G A FOXI2 Silent p.A118A 0.50 TCGA-86-8674-01 10 129535892 129535892 C A FOXI2 Missense_Mutation p.P119T 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-86-8674-01 10 13240793 13240793 G T MCM10 Missense_Mutation p.G743C 0.30 deleterious(0.01) probably_damaging(0.928) TCGA-86-8674-01 10 13240794 13240794 G T MCM10 Missense_Mutation p.G743V 0.32 tolerated(0.1) benign(0.213) TCGA-86-8674-01 10 134591206 134591206 G A INPP5A Missense_Mutation p.E337K 0.17 tolerated(1) benign(0.011) TCGA-86-8674-01 10 15617546 15617546 G T ITGA8 Missense_Mutation p.P807Q 0.27 tolerated(0.09) possibly_damaging(0.512) TCGA-86-8674-01 10 15617547 15617547 G T ITGA8 Missense_Mutation p.P807T 0.28 tolerated(0.06) probably_damaging(0.923) TCGA-86-8674-01 10 17110718 17110718 T A CUBN Missense_Mutation p.T893S 0.25 tolerated(0.16) benign(0.035) TCGA-86-8674-01 10 22680775 22680775 G T SPAG6 Missense_Mutation p.A375S 0.24 tolerated(0.08) possibly_damaging(0.76) TCGA-86-8674-01 10 48416571 48416571 C A GDF2 Silent p.L41L 0.28 TCGA-86-8674-01 10 49634457 49634457 G T MAPK8 Silent p.L302L 0.34 TCGA-86-8674-01 10 51877701 51877701 G C FAM21A Silent p.L726L 0.47 TCGA-86-8674-01 10 7776943 7776965 TCTCTAGACCACCACATTGTGAC - ITIH2 Frame_Shift_Del p.L617Afs*13 0.20 TCGA-86-8674-01 10 88677014 88677014 G T BMPR1A Nonsense_Mutation p.E267* 0.25 TCGA-86-8674-01 10 90353863 90353863 G C LIPJ Missense_Mutation p.L97F 0.23 tolerated(0.72) benign(0.164) TCGA-86-8674-01 10 93579 93579 C A TUBB8 Silent p.R251R 0.28 TCGA-86-8674-01 10 98386627 98386627 G A PIK3AP1 Nonsense_Mutation p.Q503* 0.13 TCGA-86-8674-01 11 102819820 102819820 C A MMP13 Nonsense_Mutation p.E329* 0.23 TCGA-86-8674-01 11 102826059 102826059 C A MMP13 Missense_Mutation p.R95I 0.24 deleterious(0) probably_damaging(0.999) TCGA-86-8674-01 11 111365897 111365897 C A BTG4 Missense_Mutation p.R218L 0.33 deleterious(0) possibly_damaging(0.833) TCGA-86-8674-01 11 120983919 120983919 G T TECTA Splice_Site p.X208_splice 0.24 TCGA-86-8674-01 11 134014888 134014888 T A JAM3 Nonsense_Mutation p.L204* 0.31 TCGA-86-8674-01 11 26681821 26681821 G T ANO3 Missense_Mutation p.G926W 0.27 tolerated(0.15) probably_damaging(1) TCGA-86-8674-01 11 3022478 3022478 C A CARS Missense_Mutation p.G788C 0.25 deleterious(0) probably_damaging(0.998) TCGA-86-8674-01 11 44640744 44640744 C T CD82 3'UTR 0.30 TCGA-86-8674-01 11 45992772 45992772 G A PHF21A Silent p.L169L 0.28 TCGA-86-8674-01 11 46916243 46916243 G A LRP4 Silent p.R479R 0.32 TCGA-86-8674-01 11 4825489 4825489 G T OR52R1 Missense_Mutation p.A41D 0.25 deleterious(0.01) possibly_damaging(0.721) TCGA-86-8674-01 11 48347244 48347244 G T OR4C3 Missense_Mutation p.R251M 0.08 deleterious(0) probably_damaging(0.957) TCGA-86-8674-01 11 55659110 55659110 C A TRIM51 3'UTR 0.25 TCGA-86-8674-01 11 60563027 60563027 G T MS4A10 Splice_Site p.X165_splice 0.23 TCGA-86-8674-01 11 62287775 62287775 T A AHNAK Missense_Mutation p.K4705M 0.26 probably_damaging(1) TCGA-86-8674-01 11 6453180 6453180 C A HPX Missense_Mutation p.W301C 0.31 deleterious(0) probably_damaging(1) TCGA-86-8674-01 11 66114913 66114913 C A B3GNT1 Missense_Mutation p.G35V 0.53 tolerated(0.11) probably_damaging(0.953) TCGA-86-8674-01 11 68671329 68671329 C A IGHMBP2 5'UTR 0.22 TCGA-86-8674-01 11 6913672 6913672 C A OR2D2 Silent p.G20G 0.26 TCGA-86-8674-01 11 7092437 7092437 G T NLRP14 Missense_Mutation p.Q1060H 0.32 deleterious(0.02) possibly_damaging(0.789) TCGA-86-8674-01 11 85989684 85989684 G T EED 3'UTR 0.27 TCGA-86-8674-01 11 89768487 89768487 G T TRIM49C Missense_Mutation p.R36S 0.32 deleterious(0.03) probably_damaging(0.995) TCGA-86-8674-01 12 100646268 100646268 T C DEPDC4 3'UTR 0.31 TCGA-86-8674-01 12 10233909 10233909 C A CLEC1A Missense_Mutation p.Q106H 0.27 deleterious(0.01) possibly_damaging(0.619) TCGA-86-8674-01 12 104458365 104458365 G A HCFC2 Nonsense_Mutation p.W9* 0.50 TCGA-86-8674-01 12 108604049 108604049 C A WSCD2 Silent p.R217R 0.19 TCGA-86-8674-01 12 109527870 109527870 G C ALKBH2 Missense_Mutation p.I141M 0.12 deleterious(0) possibly_damaging(0.864) TCGA-86-8674-01 12 115121050 115121050 A T TBX3 5'UTR 0.24 TCGA-86-8674-01 12 122622812 122622812 C T MLXIP Silent p.L742L 0.23 TCGA-86-8674-01 12 14589180 14589180 C T ATF7IP Nonsense_Mutation p.Q596* 0.21 TCGA-86-8674-01 12 15733670 15733670 C A PTPRO Missense_Mutation p.P1013T 0.33 deleterious(0) probably_damaging(1) TCGA-86-8674-01 12 18242291 18242291 T A RERGL 5'UTR 0.42 TCGA-86-8674-01 12 21918624 21918624 T C KCNJ8 3'UTR 0.34 TCGA-86-8674-01 12 25398282 25398282 C A KRAS Missense_Mutation p.G13C 0.17 deleterious(0.02) probably_damaging(0.997) TCGA-86-8674-01 12 2711026 2711026 G T CACNA1C Missense_Mutation p.A974S 0.28 tolerated(0.19) benign(0.032) TCGA-86-8674-01 12 47186883 47186883 C A SLC38A4 5'UTR 0.27 TCGA-86-8674-01 12 48189064 48189064 C A HDAC7 Missense_Mutation p.R396L 0.30 deleterious(0.03) benign(0.364) TCGA-86-8674-01 12 50190888 50190888 C A NCKAP5L Missense_Mutation p.G252V 0.42 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-86-8674-01 12 50190889 50190889 C A NCKAP5L Nonsense_Mutation p.G252* 0.42 TCGA-86-8674-01 12 53825063 53825063 C A AMHR2 Missense_Mutation p.H510N 0.24 deleterious_low_confidence(0.03) benign(0.014) TCGA-86-8674-01 12 57869697 57869697 G A ARHGAP9 Silent p.G410G 0.24 TCGA-86-8674-01 12 64062051 64062051 G T DPY19L2 Silent p.A41A 0.28 TCGA-86-8674-01 12 662869 662869 G T B4GALNT3 Missense_Mutation p.V594L 0.29 tolerated(0.31) benign(0.004) TCGA-86-8674-01 12 70953089 70953089 A G PTPRB Intron 0.30 TCGA-86-8674-01 12 78515820 78515820 C A NAV3 Silent p.R1284R 0.31 TCGA-86-8674-01 12 78569162 78569162 C A NAV3 Silent p.G1686G 0.23 TCGA-86-8674-01 12 81331514 81331514 G T LIN7A 5'UTR 0.41 TCGA-86-8674-01 13 102029383 102029383 C G NALCN Missense_Mutation p.D134H 0.18 tolerated(0.54) benign(0.06) TCGA-86-8674-01 13 23906879 23906879 T A SACS Silent p.T3712T 0.26 TCGA-86-8674-01 13 31822048 31822048 C T B3GALTL Missense_Mutation p.T135I 0.19 deleterious(0) probably_damaging(0.998) TCGA-86-8674-01 13 43500532 43500532 T A EPSTI1 Silent p.T199T 0.30 TCGA-86-8674-01 13 46060665 46060665 C T COG3 Silent p.F293F 0.17 TCGA-86-8674-01 13 46288438 46288438 G T SPERT Missense_Mutation p.M426I 0.40 tolerated(0.08) possibly_damaging(0.452) TCGA-86-8674-01 13 46542005 46542005 T C ZC3H13 Missense_Mutation p.R1319G 0.33 unknown(0) TCGA-86-8674-01 13 53603010 53603010 C A OLFM4 Missense_Mutation p.F13L 0.23 tolerated_low_confidence(0.49) unknown(0) TCGA-86-8674-01 13 58208842 58208842 C A PCDH17 Missense_Mutation p.A721E 0.19 deleterious(0.01) possibly_damaging(0.897) TCGA-86-8674-01 13 76432135 76432135 C T LMO7 Missense_Mutation p.H1382Y 0.25 deleterious_low_confidence(0.01) benign(0) TCGA-86-8674-01 13 77566284 77566284 G T CLN5 Silent p.A66A 0.23 TCGA-86-8674-01 13 77570219 77570219 C T CLN5 Silent p.H223H 0.24 TCGA-86-8674-01 13 99092233 99092233 G A FARP1 Missense_Mutation p.E818K 0.22 tolerated(0.16) possibly_damaging(0.875) TCGA-86-8674-01 14 20586584 20586584 G T OR4K17 Missense_Mutation p.R340I 0.18 deleterious(0.01) benign(0.192) TCGA-86-8674-01 14 32902814 32902814 G T AKAP6 Nonsense_Mutation p.G39* 0.37 TCGA-86-8674-01 14 35871600 35871600 C T NFKBIA Silent p.E302E 0.28 TCGA-86-8674-01 14 45609897 45609897 A T FANCM Silent p.P248P 0.22 TCGA-86-8674-01 14 51561238 51561238 C A TRIM9 Silent p.R140R 0.40 TCGA-86-8674-01 14 51561239 51561239 C T TRIM9 Missense_Mutation p.R140Q 0.42 tolerated(0.15) possibly_damaging(0.556) TCGA-86-8674-01 14 52520632 52520632 G T NID2 Missense_Mutation p.T365N 0.28 tolerated(0.27) benign(0.008) TCGA-86-8674-01 14 55310605 55310605 T A GCH1 3'UTR 0.40 TCGA-86-8674-01 14 59108330 59108330 G A DACT1 Missense_Mutation p.G167R 0.28 deleterious(0) probably_damaging(0.998) TCGA-86-8674-01 14 81610498 81610498 G T TSHR Missense_Mutation p.C699F 0.28 deleterious(0.02) probably_damaging(1) TCGA-86-8674-01 14 81610577 81610577 C A TSHR Silent p.T725T 0.27 TCGA-86-8674-01 14 81964777 81964777 T C SEL1L Missense_Mutation p.Y318C 0.24 deleterious(0) probably_damaging(1) TCGA-86-8674-01 14 95030231 95030231 C G SERPINA4 Missense_Mutation p.R138G 0.25 tolerated(0.3) benign(0.365) TCGA-86-8674-01 14 96178585 96178585 C A TCL1A Missense_Mutation p.S90I 0.22 tolerated(0.08) possibly_damaging(0.844) TCGA-86-8674-01 15 23931765 23931765 C T NDN Silent p.V200V 0.29 TCGA-86-8674-01 15 28387460 28387460 C A HERC2 Missense_Mutation p.R3875L 0.33 probably_damaging(0.954) TCGA-86-8674-01 15 33895499 33895499 T A RYR3 Missense_Mutation p.W700R 0.27 probably_damaging(1) TCGA-86-8674-01 15 43621286 43621286 T A LCMT2 Nonsense_Mutation p.K468* 0.29 TCGA-86-8674-01 15 43818748 43818748 C A MAP1A Missense_Mutation p.Q1693K 0.31 benign(0.297) TCGA-86-8674-01 15 45408446 45408446 T C DUOXA2 Silent p.I110I 0.06 TCGA-86-8674-01 15 88678498 88678498 C A NTRK3 Missense_Mutation p.K346N 0.28 tolerated(0.41) benign(0.008) TCGA-86-8674-01 15 88726682 88726682 C A NTRK3 Missense_Mutation p.R121I 0.28 tolerated(0.14) possibly_damaging(0.579) TCGA-86-8674-01 16 11362812 11362812 G C TNP2 Missense_Mutation p.P103R 0.19 deleterious(0.03) probably_damaging(0.942) TCGA-86-8674-01 16 24805965 24805965 G A TNRC6A Missense_Mutation p.M1151I 0.35 deleterious(0) probably_damaging(0.996) TCGA-86-8674-01 16 4015805 4015805 T A ADCY9 Missense_Mutation p.T1345S 0.27 deleterious_low_confidence(0.04) benign(0.006) TCGA-86-8674-01 16 56602768 56602768 G T MT4 Missense_Mutation p.C38F 0.26 deleterious(0.01) possibly_damaging(0.639) TCGA-86-8674-01 16 56669689 56669689 C T MT1M 3'Flank 0.29 TCGA-86-8674-01 16 57012130 57012130 C A CETP Missense_Mutation p.P370Q 0.23 tolerated(0.34) benign(0.01) TCGA-86-8674-01 16 61687461 61687461 C A CDH8 3'UTR 0.12 TCGA-86-8674-01 16 84056378 84056378 A T SLC38A8 Splice_Site p.X269_splice 0.29 TCGA-86-8674-01 16 89724821 89724821 C T SPATA33 Missense_Mutation p.S67L 0.28 tolerated(0.3) benign(0.094) TCGA-86-8674-01 16 9857952 9857952 G T GRIN2A Missense_Mutation p.P1150H 0.24 tolerated(0.44) benign(0.389) TCGA-86-8674-01 17 10302105 10302105 G A MYH8 Nonsense_Mutation p.Q1321* 0.22 TCGA-86-8674-01 17 11795156 11795156 G A DNAH9 Silent p.E3725E 0.24 TCGA-86-8674-01 17 15215662 15215662 G A TEKT3 Nonsense_Mutation p.Q339* 0.18 TCGA-86-8674-01 17 16638359 16638359 G T CCDC144A Missense_Mutation p.R925L 0.27 tolerated(0.23) benign(0.006) TCGA-86-8674-01 17 18881947 18881947 G A FAM83G Silent p.L344L 0.23 TCGA-86-8674-01 17 21319319 21319319 A T KCNJ12 Missense_Mutation p.H222L 0.16 deleterious(0) benign(0.351) TCGA-86-8674-01 17 25919606 25919606 C A KSR1 Missense_Mutation p.A281E 0.19 tolerated(0.27) benign(0.15) TCGA-86-8674-01 17 33849821 33849821 C A SLFN12L 5'UTR 0.28 TCGA-86-8674-01 17 36881059 36881059 G T MLLT6 Missense_Mutation p.A1024S 0.44 tolerated_low_confidence(0.62) possibly_damaging(0.835) TCGA-86-8674-01 17 37343117 37343117 G A CACNB1 Silent p.P160P 0.28 TCGA-86-8674-01 17 37343119 37343119 G A CACNB1 Missense_Mutation p.P160S 0.29 deleterious(0) probably_damaging(0.998) TCGA-86-8674-01 17 3806525 3806525 C A P2RX1 Missense_Mutation p.G240C 0.24 deleterious(0) probably_damaging(0.997) TCGA-86-8674-01 17 42328858 42328858 G A SLC4A1 Nonsense_Mutation p.Q804* 0.27 TCGA-86-8674-01 17 47121402 47121402 G T IGF2BP1 Missense_Mutation p.G425V 0.29 deleterious(0) probably_damaging(0.998) TCGA-86-8674-01 17 47482453 47482453 C G PHB Missense_Mutation p.K240N 0.26 deleterious(0) possibly_damaging(0.632) TCGA-86-8674-01 17 55027940 55027940 A C COIL Silent p.G221G 0.26 TCGA-86-8674-01 17 74080606 74080606 C A EXOC7 Nonsense_Mutation p.G641* 0.29 TCGA-86-8674-01 17 74080607 74080607 C A EXOC7 Silent p.P640P 0.29 TCGA-86-8674-01 17 7701122 7701122 G T DNAH2 Silent p.V2735V 0.37 TCGA-86-8674-01 17 9792733 9792733 G A GLP2R Missense_Mutation p.R458H 0.30 tolerated(0.81) benign(0.002) TCGA-86-8674-01 18 28719718 28719718 C A DSC1 Silent p.V552V 0.29 TCGA-86-8674-01 18 28993620 28993621 - A DSG4 3'UTR 0.16 TCGA-86-8674-01 18 77893691 77893691 G T ADNP2 Missense_Mutation p.R132L 0.32 deleterious(0.02) possibly_damaging(0.844) TCGA-86-8674-01 19 10439614 10439614 G C RAVER1 Missense_Mutation p.P171A 0.46 tolerated(0.53) probably_damaging(0.997) TCGA-86-8674-01 19 10600428 10600428 C A KEAP1 Missense_Mutation p.G476V 0.44 deleterious(0) probably_damaging(1) TCGA-86-8674-01 19 11106903 11106903 G - SMARCA4 Frame_Shift_Del p.Y538Tfs*75 0.29 TCGA-86-8674-01 19 12223934 12223934 T C ZNF788 Silent p.H524H 0.56 TCGA-86-8674-01 19 16611970 16611970 G T C19orf44 Missense_Mutation p.A123S 0.33 tolerated(1) benign(0.004) TCGA-86-8674-01 19 19656543 19656543 T C CILP2 Silent p.T1063T 0.26 TCGA-86-8674-01 19 20808037 20808037 G T ZNF626 Missense_Mutation p.L216I 0.27 deleterious(0.03) probably_damaging(0.995) TCGA-86-8674-01 19 22155820 22155820 T A ZNF208 Missense_Mutation p.K672N 0.23 deleterious(0.02) possibly_damaging(0.872) TCGA-86-8674-01 19 22363771 22363771 C T ZNF676 Missense_Mutation p.E250K 0.16 tolerated(0.08) benign(0.018) TCGA-86-8674-01 19 23329335 23329335 A T ZNF730 Missense_Mutation p.R497W 0.26 deleterious(0) benign(0.18) TCGA-86-8674-01 19 31770157 31770157 T A TSHZ3 Missense_Mutation p.Q181L 0.16 tolerated(0.27) benign(0.047) TCGA-86-8674-01 19 34180192 34180192 C T CHST8 Missense_Mutation p.R9W 0.28 deleterious(0) probably_damaging(0.944) TCGA-86-8674-01 19 34180193 34180193 G A CHST8 Missense_Mutation p.R9Q 0.27 tolerated(0.05) possibly_damaging(0.537) TCGA-86-8674-01 19 3747815 3747815 C T TJP3 Silent p.N791N 0.21 TCGA-86-8674-01 19 40149298 40149298 C A LGALS16 Silent p.L97L 0.33 TCGA-86-8674-01 19 40367780 40367780 C A FCGBP Missense_Mutation p.G4394C 0.21 probably_damaging(1) TCGA-86-8674-01 19 50310428 50310428 C T FUZ Missense_Mutation p.A413T 0.21 tolerated(0.33) unknown(0) TCGA-86-8674-01 19 50461659 50461659 C G SIGLEC11 Missense_Mutation p.G511A 0.26 deleterious(0) probably_damaging(0.994) TCGA-86-8674-01 19 51446816 51446816 G T KLK5 3'UTR 0.34 TCGA-86-8674-01 19 53014175 53014175 G T ZNF578 Nonsense_Mutation p.E181* 0.30 TCGA-86-8674-01 19 53644927 53644927 C G ZNF347 Missense_Mutation p.R386P 0.27 tolerated(0.26) benign(0.41) TCGA-86-8674-01 19 54314284 54314284 G C NLRP12 Missense_Mutation p.P210R 0.28 deleterious(0.03) probably_damaging(1) TCGA-86-8674-01 19 55086874 55086874 G T LILRA2 Missense_Mutation p.W269C 0.27 deleterious(0.01) possibly_damaging(0.704) TCGA-86-8674-01 19 55174999 55174999 T C LILRB4 Missense_Mutation p.L15P 0.20 deleterious_low_confidence(0.01) probably_damaging(0.928) TCGA-86-8674-01 19 55175000 55175000 G T LILRB4 Silent p.L15L 0.21 TCGA-86-8674-01 19 55816205 55816205 G T BRSK1 Missense_Mutation p.G545V 0.35 deleterious(0.01) probably_damaging(0.953) TCGA-86-8674-01 19 56379120 56379120 T A NLRP4 Silent p.A744A 0.26 TCGA-86-8674-01 19 57326214 57326214 C - PEG3 Frame_Shift_Del p.G1199Vfs*8 0.26 TCGA-86-8674-01 19 58131812 58131812 G T ZNF134 Missense_Mutation p.D109Y 0.24 tolerated(0.11) possibly_damaging(0.459) TCGA-86-8674-01 19 58145430 58145430 G C ZNF211 Splice_Site p.X43_splice 0.14 TCGA-86-8674-01 19 58598321 58598321 C A ZSCAN18 Missense_Mutation p.D289Y 0.23 deleterious(0) probably_damaging(0.988) TCGA-86-8674-01 19 7795936 7795936 C T CLEC4G Missense_Mutation p.E87K 0.29 tolerated(0.1) benign(0.091) TCGA-86-8674-01 19 885978 885978 C T MED16 Missense_Mutation p.G224D 0.45 deleterious(0) probably_damaging(0.982) TCGA-86-8674-01 1 10211558 10211558 G A UBE4B Missense_Mutation p.M955I 0.23 tolerated(0.16) benign(0.105) TCGA-86-8674-01 1 109275927 109275927 G T FNDC7 Missense_Mutation p.R638M 0.30 deleterious(0.03) possibly_damaging(0.784) TCGA-86-8674-01 1 115576762 115576762 G C TSHB Missense_Mutation p.D111H 0.29 tolerated(0.07) probably_damaging(0.995) TCGA-86-8674-01 1 1246437 1246437 T C PUSL1 Missense_Mutation p.L283P 0.22 tolerated(0.22) benign(0.317) TCGA-86-8674-01 1 145535896 145535896 A G ITGA10 Missense_Mutation p.Q695R 0.17 tolerated(0.74) benign(0.002) TCGA-86-8674-01 1 152281831 152281831 C A FLG Missense_Mutation p.S1844I 0.18 benign(0.403) TCGA-86-8674-01 1 152538317 152538317 G T LCE3E 3'UTR 0.59 TCGA-86-8674-01 1 152648873 152648873 C A LCE2C 3'UTR 0.14 TCGA-86-8674-01 1 156646841 156646841 C T NES Silent p.R72R 0.18 TCGA-86-8674-01 1 158368636 158368636 T A OR10T2 Silent p.V207V 0.27 TCGA-86-8674-01 1 160851995 160851995 C A ITLN1 Splice_Site p.X53_splice 0.36 TCGA-86-8674-01 1 171958099 171958099 C T DNM3 Missense_Mutation p.L134F 0.56 deleterious(0.01) probably_damaging(0.994) TCGA-86-8674-01 1 17559430 17559430 C T PADI1 Silent p.P426P 0.23 TCGA-86-8674-01 1 176903321 176903321 G T ASTN1 Silent p.R880R 0.21 TCGA-86-8674-01 1 181546975 181546975 C A CACNA1E Silent p.R196R 0.13 TCGA-86-8674-01 1 193060688 193060688 A C GLRX2 3'Flank 0.15 TCGA-86-8674-01 1 201489422 201489422 G T RPS10P7 RNA 0.11 TCGA-86-8674-01 1 20440644 20440644 C A PLA2G2D Missense_Mutation p.W134L 0.28 tolerated(0.51) benign(0.022) TCGA-86-8674-01 1 214488167 214488167 G T SMYD2 Missense_Mutation p.W100C 0.16 deleterious(0.01) probably_damaging(1) TCGA-86-8674-01 1 214816525 214816525 G A CENPF Missense_Mutation p.S1615N 0.56 benign(0.006) TCGA-86-8674-01 1 216011440 216011440 T A USH2A Missense_Mutation p.E3088D 0.34 possibly_damaging(0.834) TCGA-86-8674-01 1 228528530 228528530 G T OBSCN Missense_Mutation p.V6837L 0.25 benign(0.042) TCGA-86-8674-01 1 230795269 230795291 ACTGAGAGATGACCTGGAGCTCT - COG2 Frame_Shift_Del p.R46* 0.15 TCGA-86-8674-01 1 232601032 232601032 G T SIPA1L2 Missense_Mutation p.H792N 0.13 deleterious(0) probably_damaging(0.998) TCGA-86-8674-01 1 235878548 235878548 A G LYST Missense_Mutation p.F3246S 0.15 deleterious(0) probably_damaging(0.998) TCGA-86-8674-01 1 237660050 237660050 C T RYR2 Missense_Mutation p.S734L 0.29 benign(0.405) TCGA-86-8674-01 1 245005304 245005304 T C COX20 Missense_Mutation p.I34T 0.18 tolerated(0.06) benign(0.084) TCGA-86-8674-01 1 245027246 245027246 C A HNRNPU Nonsense_Mutation p.E122* 0.12 TCGA-86-8674-01 1 245165487 245165487 G T EFCAB2 Intron 0.24 TCGA-86-8674-01 1 247588028 247588028 G C NLRP3 Missense_Mutation p.S428T 0.11 tolerated(0.28) benign(0.005) TCGA-86-8674-01 1 248112558 248112558 C A OR2L8 Silent p.I133I 0.16 TCGA-86-8674-01 1 248343361 248343361 C A OR2M2 Missense_Mutation p.T25K 0.16 tolerated(0.31) possibly_damaging(0.706) TCGA-86-8674-01 1 248737693 248737693 G T OR2T34 Silent p.A122A 0.15 TCGA-86-8674-01 1 3677976 3677976 C A CCDC27 Silent p.S281S 0.19 TCGA-86-8674-01 1 39797772 39797772 G T MACF1 Intron 0.22 TCGA-86-8674-01 1 44467199 44467199 C A SLC6A9 Missense_Mutation p.D428Y 0.31 deleterious(0.02) probably_damaging(0.987) TCGA-86-8674-01 1 65145388 65145388 C T CACHD1 Missense_Mutation p.H1068Y 0.32 deleterious(0.01) benign(0.282) TCGA-86-8674-01 1 67101698 67101698 G T SGIP1 Silent p.S57S 0.32 TCGA-86-8674-01 1 76282203 76282203 G T MSH4 Nonsense_Mutation p.E321* 0.26 TCGA-86-8674-01 1 79093672 79093672 G T IFI44L Missense_Mutation p.L24F 0.32 tolerated(0.56) probably_damaging(0.999) TCGA-86-8674-01 1 87045091 87045091 C A CLCA4 Missense_Mutation p.T726N 0.24 tolerated(0.58) benign(0.001) TCGA-86-8674-01 1 87045092 87045092 C A CLCA4 Silent p.T726T 0.24 TCGA-86-8674-01 20 30432982 30432982 C A FOXS1 Missense_Mutation p.G122C 0.38 deleterious(0.01) possibly_damaging(0.754) TCGA-86-8674-01 20 35207322 35207322 C G TGIF2 Missense_Mutation p.Q49E 0.21 deleterious(0.03) probably_damaging(0.983) TCGA-86-8674-01 20 35743657 35743657 C A MROH8 Missense_Mutation p.Q845H 0.30 tolerated(0.43) probably_damaging(0.975) TCGA-86-8674-01 20 41101199 41101199 G T PTPRT Missense_Mutation p.P386Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-86-8674-01 20 42680009 42680009 G T TOX2 Missense_Mutation p.G159C 0.29 tolerated(0.07) probably_damaging(0.944) TCGA-86-8674-01 20 44757723 44757723 G T CD40 3'UTR 0.20 TCGA-86-8674-01 20 49508224 49508224 A C ADNP Missense_Mutation p.S1009R 0.25 deleterious_low_confidence(0.01) benign(0.052) TCGA-86-8674-01 20 56735902 56735902 G T C20orf85 3'UTR 0.13 TCGA-86-8674-01 20 61990927 61990927 G C CHRNA4 Silent p.G67G 0.17 TCGA-86-8674-01 20 62729780 62729780 G T OPRL1 Silent p.L247L 0.21 TCGA-86-8674-01 21 15599704 15599704 G T RBM11 3'UTR 0.18 TCGA-86-8674-01 21 41559874 41559874 C A DSCAM Missense_Mutation p.C865F 0.25 deleterious(0) probably_damaging(0.99) TCGA-86-8674-01 21 45094950 45094950 A T RRP1B Missense_Mutation p.E152V 0.30 deleterious(0.03) possibly_damaging(0.876) TCGA-86-8674-01 21 46900667 46900667 C T COL18A1 Silent p.P682P 0.13 TCGA-86-8674-01 22 18845911 18845911 A T BCRP7 Intron 0.12 TCGA-86-8674-01 22 24122662 24122662 G T MMP11 Missense_Mutation p.R152L 0.23 deleterious(0.02) benign(0.249) TCGA-86-8674-01 22 30772756 30772756 T A CCDC157 3'UTR 0.27 TCGA-86-8674-01 22 36205961 36205961 T A RBFOX2 Missense_Mutation p.T110S 0.21 benign(0.036) TCGA-86-8674-01 22 37319389 37319389 C A CSF2RB Silent p.T60T 0.21 TCGA-86-8674-01 22 50988042 50988042 C A KLHDC7B Silent p.R483R 0.24 TCGA-86-8674-01 2 103281574 103281574 T C SLC9A2 Missense_Mutation p.F257L 0.31 tolerated(0.29) possibly_damaging(0.84) TCGA-86-8674-01 2 109384319 109384319 G A RANBP2 Missense_Mutation p.A2442T 0.21 deleterious(0.01) probably_damaging(0.963) TCGA-86-8674-01 2 111395737 111395737 C T BUB1 Splice_Site p.X1021_splice 0.17 TCGA-86-8674-01 2 120844793 120844793 G C EPB41L5 Missense_Mutation p.V284L 0.25 deleterious(0) probably_damaging(0.981) TCGA-86-8674-01 2 122208526 122208526 G A CLASP1 Missense_Mutation p.H496Y 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-86-8674-01 2 148731062 148731062 C A ORC4 Missense_Mutation p.R30L 0.19 tolerated(0.09) benign(0.031) TCGA-86-8674-01 2 157427643 157427643 C G GPD2 Intron 0.22 TCGA-86-8674-01 2 165970461 165970462 TG C SCN3A Frame_Shift_Del p.P1178Rfs*5 0.15 TCGA-86-8674-01 2 169764540 169764540 C A G6PC2 Missense_Mutation p.P340H 0.26 deleterious(0) probably_damaging(0.969) TCGA-86-8674-01 2 170058244 170058244 G A LRP2 Silent p.A2782A 0.23 TCGA-86-8674-01 2 175676257 175676257 T G CHN1 Missense_Mutation p.K316Q 0.34 tolerated(0.1) probably_damaging(0.996) TCGA-86-8674-01 2 182339892 182339892 G T ITGA4 Missense_Mutation p.G145W 0.26 deleterious(0) probably_damaging(1) TCGA-86-8674-01 2 18757499 18757499 T A NT5C1B Missense_Mutation p.D487V 0.40 deleterious(0.01) probably_damaging(0.969) TCGA-86-8674-01 2 196834683 196834683 C G DNAH7 Missense_Mutation p.A732P 0.22 deleterious(0) probably_damaging(0.986) TCGA-86-8674-01 2 211476985 211476985 C T CPS1 Missense_Mutation p.P852S 0.25 deleterious(0) possibly_damaging(0.901) TCGA-86-8674-01 2 216960740 216960740 G T TMEM169 Missense_Mutation p.Q18H 0.20 tolerated_low_confidence(0.57) benign(0.001) TCGA-86-8674-01 2 216960741 216960741 G T TMEM169 Missense_Mutation p.G19C 0.21 tolerated_low_confidence(0.1) possibly_damaging(0.779) TCGA-86-8674-01 2 220357519 220357519 C A SPEG 3'UTR 0.43 TCGA-86-8674-01 2 224463163 224463163 C G SCG2 Missense_Mutation p.D280H 0.15 deleterious(0) probably_damaging(0.919) TCGA-86-8674-01 2 224463340 224463340 C T SCG2 Missense_Mutation p.E221K 0.23 deleterious(0) probably_damaging(0.917) TCGA-86-8674-01 2 240969238 240969238 G T OR6B2 Silent p.A203A 0.18 TCGA-86-8674-01 2 26486259 26486259 A G HADHB Missense_Mutation p.K41E 0.29 tolerated(0.23) benign(0.003) TCGA-86-8674-01 2 31489545 31489545 C A EHD3 Missense_Mutation p.P528Q 0.20 deleterious(0) probably_damaging(1) TCGA-86-8674-01 2 44502822 44502822 G A SLC3A1 Missense_Mutation p.G50S 0.30 tolerated(0.97) benign(0) TCGA-86-8674-01 2 50850488 50850488 G T NRXN1 Silent p.A399A 0.30 TCGA-86-8674-01 2 60687819 60687819 G C BCL11A Missense_Mutation p.T743S 0.30 tolerated(0.05) benign(0.024) TCGA-86-8674-01 2 89416881 89416881 C G IGKV1-17 Missense_Mutation p.Q101H 0.33 deleterious(0.01) benign(0.365) TCGA-86-8674-01 3 108836879 108836879 G T MORC1 Silent p.R10R 0.20 TCGA-86-8674-01 3 126154469 126154469 C A CCDC37 Missense_Mutation p.R566S 0.13 deleterious(0) probably_damaging(0.965) TCGA-86-8674-01 3 128976378 128976378 C G COPG1 Missense_Mutation p.I215M 0.27 deleterious(0) possibly_damaging(0.467) TCGA-86-8674-01 3 1369194 1369194 A G CNTN6 Silent p.S379S 0.22 TCGA-86-8674-01 3 184290625 184290625 C T EPHB3 Missense_Mutation p.R173C 0.32 deleterious(0) probably_damaging(0.953) TCGA-86-8674-01 3 27346453 27346453 C T NEK10 Silent p.A271A 0.27 TCGA-86-8674-01 3 32030690 32030690 G T ZNF860 Missense_Mutation p.C40F 0.16 tolerated(0.1) benign(0.038) TCGA-86-8674-01 3 44408980 44408980 A G TCAIM Missense_Mutation p.R118G 0.24 tolerated(0.09) benign(0.159) TCGA-86-8674-01 3 49362339 49362339 T C USP4 Silent p.L207L 0.24 TCGA-86-8674-01 3 71050204 71050204 G C FOXP1 Silent p.L329L 0.23 TCGA-86-8674-01 3 7620488 7620488 T C GRM7 Missense_Mutation p.L632P 0.32 deleterious(0) probably_damaging(0.999) TCGA-86-8674-01 3 97852052 97852052 T G OR5H1 Missense_Mutation p.S171A 0.13 deleterious(0.01) possibly_damaging(0.685) TCGA-86-8674-01 4 10079461 10079461 C A WDR1 Silent p.V495V 0.35 TCGA-86-8674-01 4 10446124 10446124 T A ZNF518B Missense_Mutation p.Q610L 0.30 deleterious(0.05) benign(0.157) TCGA-86-8674-01 4 153897454 153897454 G T FHDC1 Missense_Mutation p.R1004L 0.26 deleterious(0.01) possibly_damaging(0.69) TCGA-86-8674-01 4 154962 154962 A T ZNF718 RNA 0.20 TCGA-86-8674-01 4 159642523 159642524 GA - PPID Frame_Shift_Del p.L66Pfs*12 0.17 TCGA-86-8674-01 4 162697072 162697072 A C FSTL5 Missense_Mutation p.D188E 0.28 deleterious(0.02) benign(0.002) TCGA-86-8674-01 4 169108657 169108657 T A ANXA10 3'UTR 0.37 TCGA-86-8674-01 4 178231023 178231023 C T NEIL3 5'UTR 0.58 TCGA-86-8674-01 4 36162126 36162126 G A ARAP2 Silent p.F799F 0.16 TCGA-86-8674-01 4 36162149 36162149 G A ARAP2 Nonsense_Mutation p.Q792* 0.21 TCGA-86-8674-01 4 5630425 5630425 T A EVC2 Missense_Mutation p.S583C 0.28 deleterious(0.03) possibly_damaging(0.843) TCGA-86-8674-01 4 62599251 62599251 G T LPHN3 Nonsense_Mutation p.G392* 0.13 TCGA-86-8674-01 4 62599252 62599252 G T LPHN3 Missense_Mutation p.G392V 0.14 deleterious(0) probably_damaging(1) TCGA-86-8674-01 4 71115171 71115171 G T CSN3 Missense_Mutation p.A182S 0.31 deleterious_low_confidence(0) unknown(0) TCGA-86-8674-01 4 76481261 76481261 A T C4orf26 5'Flank 0.29 TCGA-86-8674-01 4 84457912 84457912 T C AGPAT9 Missense_Mutation p.L46S 0.24 deleterious(0) possibly_damaging(0.558) TCGA-86-8674-01 4 90647629 90647629 A T SNCA 3'UTR 0.53 TCGA-86-8674-01 4 96046198 96046198 C A BMPR1B Missense_Mutation p.P201T 0.21 tolerated(0.15) possibly_damaging(0.791) TCGA-86-8674-01 5 100192084 100192084 C A ST8SIA4 Missense_Mutation p.V174L 0.23 benign(0.008) TCGA-86-8674-01 5 127516681 127516681 G T SLC12A2 Silent p.R1069R 0.28 TCGA-86-8674-01 5 13902233 13902233 C A DNAH5 Missense_Mutation p.K553N 0.17 possibly_damaging(0.728) TCGA-86-8674-01 5 140167228 140167228 C T PCDHA1 Silent p.N451N 0.35 TCGA-86-8674-01 5 140530238 140530238 G A PCDHB6 Missense_Mutation p.A134T 0.30 tolerated_low_confidence(0.07) benign(0) TCGA-86-8674-01 5 140710463 140710463 G T PCDHGA1 Missense_Mutation p.R71M 0.23 deleterious_low_confidence(0.05) probably_damaging(0.992) TCGA-86-8674-01 5 140724491 140724491 G C PCDHGA3 Silent p.V297V 0.23 TCGA-86-8674-01 5 140750264 140750264 G T PCDHGB3 Silent p.T101T 0.25 TCGA-86-8674-01 5 140799283 140799283 G T PCDHGB7 Silent p.L619L 0.25 TCGA-86-8674-01 5 156638348 156638348 C A ITK Missense_Mutation p.S98R 0.24 tolerated(0.16) probably_damaging(0.972) TCGA-86-8674-01 5 159821978 159821978 T C C5orf54 Missense_Mutation p.I174V 0.24 tolerated(0.08) benign(0.014) TCGA-86-8674-01 5 19503128 19503128 G T CDH18 Missense_Mutation p.P535T 0.22 tolerated(0.06) probably_damaging(0.999) TCGA-86-8674-01 5 19503169 19503169 G C CDH18 Missense_Mutation p.P521R 0.13 tolerated(0.06) benign(0.055) TCGA-86-8674-01 5 32087673 32087673 C T PDZD2 Silent p.S1373S 0.12 TCGA-86-8674-01 5 33576970 33576970 G C ADAMTS12 Missense_Mutation p.T1054S 0.21 tolerated(0.25) benign(0.013) TCGA-86-8674-01 5 41939543 41939543 G T FBXO4 Missense_Mutation p.R300I 0.23 tolerated(0.11) benign(0.369) TCGA-86-8674-01 5 55466583 55466583 G A ANKRD55 Silent p.H120H 0.27 TCGA-86-8674-01 5 68470846 68470846 G T CCNB1 Missense_Mutation p.R283I 0.28 tolerated(0.06) benign(0.315) TCGA-86-8674-01 5 70858315 70858315 C T BDP1 Nonsense_Mutation p.Q2571* 0.26 TCGA-86-8674-01 5 74324736 74324736 C G GCNT4 Missense_Mutation p.G376A 0.23 deleterious(0) possibly_damaging(0.648) TCGA-86-8674-01 5 74324737 74324737 C A GCNT4 Missense_Mutation p.G376C 0.23 deleterious(0) probably_damaging(0.971) TCGA-86-8674-01 5 75960891 75960891 G T IQGAP2 Missense_Mutation p.G857V 0.15 deleterious(0.02) benign(0.091) TCGA-86-8674-01 5 79029306 79029306 T C CMYA5 Missense_Mutation p.L1573S 0.29 benign(0.039) TCGA-86-8674-01 6 10935338 10935338 C A SYCP2L Missense_Mutation p.N577K 0.45 tolerated(0.25) benign(0.164) TCGA-86-8674-01 6 112390715 112390715 C A WISP3 Nonsense_Mutation p.C337* 0.40 TCGA-86-8674-01 6 112457369 112457369 C T LAMA4 Missense_Mutation p.D1124N 0.25 tolerated(0.42) probably_damaging(1) TCGA-86-8674-01 6 129618857 129618857 A C LAMA2 Silent p.R962R 0.51 TCGA-86-8674-01 6 28539963 28539963 C A SCAND3 Nonsense_Mutation p.G1235* 0.19 TCGA-86-8674-01 6 30675822 30675825 TCTG - MDC1 Frame_Shift_Del p.T844Mfs*2 0.18 TCGA-86-8674-01 6 32944374 32944374 C T BRD2 Silent p.T287T 0.15 TCGA-86-8674-01 6 33638117 33638117 C T ITPR3 Silent p.L735L 0.34 TCGA-86-8674-01 6 49585780 49585780 C A RHAG Splice_Site p.X164_splice 0.45 TCGA-86-8674-01 6 50696618 50696618 C A TFAP2D Silent p.G216G 0.13 TCGA-86-8674-01 6 56919043 56919043 C G KIAA1586 Missense_Mutation p.I582M 0.10 tolerated(0.11) benign(0.117) TCGA-86-8674-01 6 63990462 63990462 A T LGSN Missense_Mutation p.S332T 0.30 tolerated(0.36) benign(0.044) TCGA-86-8674-01 6 70981355 70981355 C G COL9A1 Intron 0.31 TCGA-86-8674-01 6 88126413 88126413 G T C6ORF165 Missense_Mutation p.A167S 0.23 tolerated(0.38) benign(0) TCGA-86-8674-01 7 100002653 100002653 C A ZCWPW1 Nonsense_Mutation p.E412* 0.27 TCGA-86-8674-01 7 100087083 100087083 G T NYAP1 Missense_Mutation p.G580V 0.18 tolerated(0.06) possibly_damaging(0.794) TCGA-86-8674-01 7 103202357 103202357 C A RELN Missense_Mutation p.V1752L 0.25 tolerated(0.83) benign(0.001) TCGA-86-8674-01 7 107430026 107430026 G T SLC26A3 Silent p.L226L 0.33 TCGA-86-8674-01 7 107704342 107704342 G T LAMB4 Missense_Mutation p.N975K 0.32 deleterious(0) probably_damaging(1) TCGA-86-8674-01 7 111430530 111430530 T G DOCK4 Missense_Mutation p.S1100R 0.16 tolerated(0.62) benign(0.011) TCGA-86-8674-01 7 121942156 121942156 C T FEZF1 Silent p.P441P 0.23 TCGA-86-8674-01 7 121942157 121942157 G T FEZF1 Missense_Mutation p.P441Q 0.22 tolerated_low_confidence(0.1) unknown(0) TCGA-86-8674-01 7 126882809 126882809 G T GRM8 Silent p.V150V 0.29 TCGA-86-8674-01 7 127014927 127014928 - AA ZNF800 Frame_Shift_Ins p.E155Lfs*38 0.19 TCGA-86-8674-01 7 134879799 134879799 C G WDR91 Missense_Mutation p.V428L 0.27 deleterious(0.04) benign(0.392) TCGA-86-8674-01 7 142124540 142124540 G C TRBV6-8 Missense_Mutation p.A9G 0.28 deleterious(0.02) benign(0.003) TCGA-86-8674-01 7 142326801 142326801 G T TRBV19 Missense_Mutation p.K33N 0.25 tolerated(0.27) benign(0.069) TCGA-86-8674-01 7 142326802 142326802 G C TRBV19 Missense_Mutation p.E34Q 0.25 deleterious(0.04) probably_damaging(0.918) TCGA-86-8674-01 7 142638446 142638446 G T KEL Missense_Mutation p.H698N 0.35 tolerated(0.3) benign(0.003) TCGA-86-8674-01 7 150490186 150490186 T A TMEM176B Missense_Mutation p.Q197L 0.17 tolerated(0.11) benign(0.253) TCGA-86-8674-01 7 44154539 44154539 C T POLD2 Missense_Mutation p.E419K 0.19 tolerated(0.27) benign(0.005) TCGA-86-8674-01 7 44573015 44573015 C - NPC1L1 Intron 0.25 TCGA-86-8674-01 7 45725760 45725760 G T ADCY1 Missense_Mutation p.G758V 0.29 tolerated(0.52) benign(0.001) TCGA-86-8674-01 7 71488746 71488746 G C CALN1 Missense_Mutation p.Q133E 0.32 deleterious(0) benign(0.187) TCGA-86-8674-01 7 71488747 71488747 G T CALN1 Silent p.G132G 0.32 TCGA-86-8674-01 7 72657960 72657960 C A GTF2IRD2P1 RNA 0.24 TCGA-86-8674-01 7 94040217 94040217 G T COL1A2 Missense_Mutation p.R405L 0.19 probably_damaging(0.982) TCGA-86-8674-01 8 124553288 124553288 G A FBXO32 5'UTR 0.45 TCGA-86-8674-01 8 134488118 134488118 C G ST3GAL1 Silent p.L50L 0.20 TCGA-86-8674-01 8 1575026 1575026 C A DLGAP2 Silent p.T441T 0.36 TCGA-86-8674-01 8 1575027 1575027 C A DLGAP2 Missense_Mutation p.L442M 0.36 deleterious(0.01) probably_damaging(0.973) TCGA-86-8674-01 8 16026001 16026001 C - MSR1 Frame_Shift_Del p.G199Afs*17 0.16 TCGA-86-8674-01 8 2807848 2807848 C T CSMD1 Missense_Mutation p.E3407K 0.42 possibly_damaging(0.763) TCGA-86-8674-01 8 3200874 3200874 C G CSMD1 Missense_Mutation p.W1191C 0.38 possibly_damaging(0.851) TCGA-86-8674-01 8 53568929 53568929 C T RB1CC1 Missense_Mutation p.E1154K 0.12 deleterious_low_confidence(0.01) benign(0.341) TCGA-86-8674-01 8 61757938 61757938 A G CHD7 Missense_Mutation p.Y1727C 0.43 possibly_damaging(0.884) TCGA-86-8674-01 8 642556 642556 C T ERICH1 Missense_Mutation p.E76K 0.14 tolerated(0.1) possibly_damaging(0.736) TCGA-86-8674-01 8 71508556 71508556 C A TRAM1 Nonsense_Mutation p.E143* 0.41 TCGA-86-8674-01 8 77766737 77766737 C A ZFHX4 Missense_Mutation p.P2527Q 0.18 benign(0.083) TCGA-86-8674-01 8 77766829 77766829 C G ZFHX4 Missense_Mutation p.Q2558E 0.20 benign(0.424) TCGA-86-8674-01 8 77766841 77766841 C T ZFHX4 Nonsense_Mutation p.Q2562* 0.20 TCGA-86-8674-01 8 87242454 87242454 C - SLC7A13 Frame_Shift_Del p.G18Afs*27 0.22 TCGA-86-8674-01 8 88885415 88885415 C T DCAF4L2 Nonsense_Mutation p.W262* 0.45 TCGA-86-8674-01 8 99961674 99961674 C A OSR2 Missense_Mutation p.P165H 0.45 deleterious(0) probably_damaging(0.959) TCGA-86-8674-01 9 100326390 100326390 G C TMOD1 Silent p.T186T 0.31 TCGA-86-8674-01 9 109687433 109687433 G A ZNF462 Missense_Mutation p.E414K 0.26 benign(0.292) TCGA-86-8674-01 9 109687463 109687463 T A ZNF462 Missense_Mutation p.L424I 0.34 benign(0.364) TCGA-86-8674-01 9 111753118 111753118 G A CTNNAL1 Missense_Mutation p.A176V 0.24 tolerated(0.53) benign(0.016) TCGA-86-8674-01 9 115337246 115337246 C T KIAA1958 Missense_Mutation p.P296S 0.26 deleterious(0.04) benign(0.054) TCGA-86-8674-01 9 117568147 117568147 C A TNFSF15 Missense_Mutation p.G49V 0.34 tolerated(0.14) benign(0.064) TCGA-86-8674-01 9 134019960 134019960 C G NUP214 Missense_Mutation p.L530V 0.28 possibly_damaging(0.567) TCGA-86-8674-01 9 135865281 135865281 C A GFI1B Silent p.T267T 0.25 TCGA-86-8674-01 9 136596590 136596590 C T SARDH Missense_Mutation p.G176D 0.21 tolerated(0.07) probably_damaging(1) TCGA-86-8674-01 9 138377866 138377866 G T PPP1R26 Missense_Mutation p.G504W 0.24 deleterious(0) benign(0.191) TCGA-86-8674-01 9 139943247 139943247 G A ENTPD2 Silent p.A450A 0.32 TCGA-86-8674-01 9 36966649 36966649 C A PAX5 Missense_Mutation p.G226V 0.18 tolerated(0.07) possibly_damaging(0.87) TCGA-86-8674-01 9 71628085 71628085 C T PRKACG Silent p.E308E 0.38 TCGA-86-8674-01 9 71851089 71851089 G A TJP2 Silent p.L673L 0.27 TCGA-86-8674-01 9 74300094 74300094 C G TMEM2 3'UTR 0.30 TCGA-86-8674-01 9 84549025 84549025 C A RP11-383M4.6 Intron 0.31 TCGA-86-8674-01 9 8471007 8471007 C T PTPRD Missense_Mutation p.M1164I 0.31 tolerated(0.16) benign(0.184) TCGA-86-8674-01 9 87486749 87486749 G T NTRK2 Intron 0.27 TCGA-86-8674-01 9 90534071 90534071 A G SPATA31C1 Intron 0.31 TCGA-86-8674-01 9 94488832 94488832 C A ROR2 Missense_Mutation p.Q459H 0.28 tolerated(0.1) benign(0.005) TCGA-86-8674-01 X 102337206 102337206 G A NXF3 Silent p.F289F 0.54 TCGA-86-8674-01 X 120008813 120008813 C G CT47B1 Missense_Mutation p.E238Q 0.58 tolerated(0.06) unknown(0) TCGA-86-8674-01 X 142717340 142717340 C A SLITRK4 Nonsense_Mutation p.E529* 0.64 TCGA-86-8674-01 X 154754267 154754267 G C TMLHE Missense_Mutation p.R70G 0.51 deleterious(0.05) possibly_damaging(0.887) TCGA-86-8674-01 X 21624983 21624983 C A CNKSR2 Missense_Mutation p.P711T 0.56 tolerated(0.36) possibly_damaging(0.843) TCGA-86-8674-01 X 31986631 31986631 C G DMD Missense_Mutation p.E2147Q 0.50 possibly_damaging(0.607) TCGA-86-8674-01 X 33038318 33038318 C T DMD Splice_Site p.X11_splice 0.69 TCGA-86-8674-01 X 65247911 65247911 G T VSIG4 Silent p.T246T 0.28 TCGA-86-8674-01 X 69283123 69283123 T A OTUD6A Missense_Mutation p.V250D 0.39 tolerated(0.71) benign(0.001) TCGA-86-8674-01 X 70511784 70511787 TTCA - NONO Frame_Shift_Del p.H106Rfs*15 0.44 TCGA-86-8674-01 X 78618125 78618125 T A ITM2A Missense_Mutation p.I169F 0.53 deleterious(0) possibly_damaging(0.831) TCGA-86-8674-01 X 84569447 84569447 G T POF1B Nonsense_Mutation p.Y316* 0.59 TCGA-86-8674-01 X 91133466 91133466 G T PCDH11X Missense_Mutation p.D743Y 0.48 deleterious(0.03) probably_damaging(1) TCGA-86-A456-01 10 103560038 103560038 C T MGEA5 Missense_Mutation p.E386K 0.06 tolerated(0.06) possibly_damaging(0.828) TCGA-86-A456-01 10 129904626 129904626 G A MKI67 Silent p.A1826A 0.10 TCGA-86-A456-01 10 134912262 134912262 C T GPR123 Nonsense_Mutation p.Q84* 0.04 TCGA-86-A456-01 10 17882710 17882710 C A MRC1L1 Missense_Mutation p.T274N 0.29 benign(0.02) TCGA-86-A456-01 10 18803260 18803260 C A CACNB2 Missense_Mutation p.P256T 0.19 deleterious(0.04) benign(0.169) TCGA-86-A456-01 10 21250670 21250670 C T NEBL Silent p.R62R 0.15 TCGA-86-A456-01 10 27450052 27450052 C T MASTL Missense_Mutation p.S165F 0.15 deleterious(0) probably_damaging(0.972) TCGA-86-A456-01 10 29819566 29819566 C G SVIL Silent p.L692L 0.09 TCGA-86-A456-01 10 31810322 31810322 C A ZEB1 Missense_Mutation p.P688T 0.11 tolerated(0.06) possibly_damaging(0.51) TCGA-86-A456-01 10 47086949 47086949 G T NPY4R Missense_Mutation p.V56F 0.06 deleterious(0) benign(0.288) TCGA-86-A456-01 10 52912996 52912996 G T PRKG1 Missense_Mutation p.Q128H 0.19 deleterious(0.04) benign(0.003) TCGA-86-A456-01 10 55944938 55944938 G T PCDH15 Missense_Mutation p.L466I 0.14 tolerated(0.11) possibly_damaging(0.549) TCGA-86-A456-01 10 64136480 64136480 T C ZNF365 Silent p.I176I 0.19 TCGA-86-A456-01 10 72360337 72360337 T C PRF1 Missense_Mutation p.R108G 0.29 tolerated(0.06) benign(0.002) TCGA-86-A456-01 10 76818113 76818113 G T DUPD1 Missense_Mutation p.H54N 0.20 deleterious(0.01) probably_damaging(0.963) TCGA-86-A456-01 10 95353737 95353737 G T RBP4 Silent p.S137S 0.27 TCGA-86-A456-01 10 97916755 97916755 A T ZNF518A RNA 0.20 TCGA-86-A456-01 11 102076813 102076813 C T YAP1 Intron 0.11 TCGA-86-A456-01 11 120008273 120008273 G A TRIM29 Missense_Mutation p.A156V 0.07 tolerated(0.22) benign(0.11) TCGA-86-A456-01 11 120732821 120732821 G T GRIK4 Missense_Mutation p.G300W 0.21 deleterious(0) probably_damaging(0.995) TCGA-86-A456-01 11 123811055 123811055 T A OR4D5 Silent p.I244I 0.07 TCGA-86-A456-01 11 124134945 124134945 C A OR8G5 Missense_Mutation p.L75M 0.17 tolerated(0.12) benign(0.041) TCGA-86-A456-01 11 1643219 1643219 A C KRTAP5-4 Missense_Mutation p.C35W 0.12 deleterious_low_confidence(0) unknown(0) TCGA-86-A456-01 11 1643240 1643240 A C KRTAP5-4 Missense_Mutation p.C28W 0.09 deleterious_low_confidence(0) unknown(0) TCGA-86-A456-01 11 1651500 1651500 G T KRTAP5-5 Missense_Mutation p.G144W 0.19 deleterious_low_confidence(0.02) unknown(0) TCGA-86-A456-01 11 17527396 17527396 G T USH1C Missense_Mutation p.A705D 0.14 deleterious_low_confidence(0.04) benign(0.1) TCGA-86-A456-01 11 35211532 35211532 A - CD44 Frame_Shift_Del p.Y196Sfs*29 0.19 TCGA-86-A456-01 11 3680906 3680906 T C ART1 Missense_Mutation p.C53R 0.18 deleterious(0) probably_damaging(1) TCGA-86-A456-01 11 47330580 47330580 G T MADD Missense_Mutation p.E1306D 0.18 deleterious_low_confidence(0.02) probably_damaging(0.989) TCGA-86-A456-01 11 47353781 47353781 A T MYBPC3 Missense_Mutation p.L1219Q 0.22 deleterious(0.05) probably_damaging(0.912) TCGA-86-A456-01 11 47603753 47603753 G T NDUFS3 Missense_Mutation p.W165C 0.23 deleterious(0) probably_damaging(1) TCGA-86-A456-01 11 4904023 4904023 C G OR51T1 Silent p.T325T 0.04 TCGA-86-A456-01 11 49831436 49831436 G C RP11-707M1.1 RNA 0.12 TCGA-86-A456-01 11 5068470 5068470 C A OR52J3 Missense_Mutation p.L239I 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-86-A456-01 11 56510513 56510513 G T OR9G4 Missense_Mutation p.H259N 0.25 deleterious(0) probably_damaging(0.999) TCGA-86-A456-01 11 60264852 60264852 C A MS4A12 Missense_Mutation p.P21T 0.07 deleterious(0.04) possibly_damaging(0.543) TCGA-86-A456-01 11 6291102 6291102 A T CCKBR Missense_Mutation p.T119S 0.12 tolerated(0.15) benign(0.016) TCGA-86-A456-01 11 63283068 63283068 T C LGALS12 Silent p.H250H 0.23 TCGA-86-A456-01 11 64368374 64368374 T A SLC22A12 Nonsense_Mutation p.L521* 0.12 TCGA-86-A456-01 11 64811948 64811948 G T SAC3D1 Missense_Mutation p.G276C 0.13 deleterious(0.03) probably_damaging(0.939) TCGA-86-A456-01 11 6503349 6503349 C A TIMM10B Silent p.L70L 0.09 TCGA-86-A456-01 11 66190373 66190373 G A NPAS4 Missense_Mutation p.R220H 0.07 tolerated(0.13) benign(0.001) TCGA-86-A456-01 11 66276579 66276579 G T DPP3 Missense_Mutation p.A691S 0.10 tolerated(0.69) benign(0.018) TCGA-86-A456-01 11 66392770 66392770 G T RBM14 Missense_Mutation p.G475W 0.20 deleterious(0) unknown(0) TCGA-86-A456-01 11 92577367 92577367 G A FAT3 Missense_Mutation p.D3612N 0.19 probably_damaging(0.979) TCGA-86-A456-01 11 92590378 92590378 A T FAT3 Splice_Site p.X3789_splice 0.16 TCGA-86-A456-01 12 10234000 10234000 T A CLEC1A Missense_Mutation p.Y76F 0.17 tolerated(0.15) possibly_damaging(0.482) TCGA-86-A456-01 12 10999898 10999898 T C PRR4 Missense_Mutation p.R57G 0.14 deleterious_low_confidence(0.01) benign(0.291) TCGA-86-A456-01 12 129822296 129822296 T A TMEM132D Silent p.P394P 0.30 TCGA-86-A456-01 12 19506879 19506879 G T PLEKHA5 Silent p.S1027S 0.09 TCGA-86-A456-01 12 20890120 20890120 G T SLCO1C1 Nonsense_Mutation p.E488* 0.20 TCGA-86-A456-01 12 21229492 21229492 C A SLCO1B7 Silent p.S571S 0.13 TCGA-86-A456-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.26 deleterious(0) possibly_damaging(0.479) TCGA-86-A456-01 12 27849434 27849434 T C REP15 5'UTR 0.23 TCGA-86-A456-01 12 34179442 34179442 G T ALG10 Missense_Mutation p.W338C 0.18 deleterious(0.01) probably_damaging(0.976) TCGA-86-A456-01 12 49334812 49334812 C T ARF3 Missense_Mutation p.V23M 0.22 deleterious_low_confidence(0) possibly_damaging(0.875) TCGA-86-A456-01 12 56481847 56481847 T A ERBB3 Missense_Mutation p.C259S 0.10 deleterious(0) probably_damaging(1) TCGA-86-A456-01 12 57109916 57109916 G C NACA Missense_Mutation p.L647V 0.18 tolerated_low_confidence(0.06) possibly_damaging(0.567) TCGA-86-A456-01 12 71533575 71533575 C T TSPAN8 Silent p.L59L 0.05 TCGA-86-A456-01 12 7947536 7947536 C A NANOG Missense_Mutation p.Q255K 0.30 tolerated(0.05) possibly_damaging(0.489) TCGA-86-A456-01 13 19753542 19753542 C A TUBA3C Missense_Mutation p.E55D 0.20 deleterious_low_confidence(0.04) benign(0.007) TCGA-86-A456-01 13 39542598 39542598 G T STOML3 Missense_Mutation p.P197H 0.24 deleterious(0) probably_damaging(1) TCGA-86-A456-01 13 49089381 49089381 G A RCBTB2 Silent p.L103L 0.09 TCGA-86-A456-01 13 96293707 96293707 C A DZIP1 Nonsense_Mutation p.E147* 0.24 TCGA-86-A456-01 14 106053916 106053916 T A IGHA2 Silent p.P201P 0.08 TCGA-86-A456-01 14 106174988 106174988 G T IGHA1 Missense_Mutation p.S5R 0.17 tolerated(0.09) benign(0.013) TCGA-86-A456-01 14 20612583 20612583 C T OR4N5 Missense_Mutation p.S230F 0.23 tolerated(0.07) benign(0.114) TCGA-86-A456-01 14 32902943 32902943 G C AKAP6 Missense_Mutation p.E82Q 0.06 deleterious(0) probably_damaging(0.937) TCGA-86-A456-01 14 36785957 36785957 G A MBIP Missense_Mutation p.S64L 0.08 tolerated(0.16) benign(0.414) TCGA-86-A456-01 14 39769086 39769086 G T CTAGE5 Missense_Mutation p.V236L 0.12 tolerated(0.32) benign(0.005) TCGA-86-A456-01 14 74327344 74327344 C G PTGR2 Missense_Mutation p.S47C 0.14 deleterious(0) probably_damaging(1) TCGA-86-A456-01 14 75266183 75266183 G T YLPM1 Missense_Mutation p.D1395Y 0.08 probably_damaging(0.998) TCGA-86-A456-01 15 22382864 22382864 A T OR4N4 Missense_Mutation p.H131L 0.11 deleterious(0) benign(0.185) TCGA-86-A456-01 15 33938651 33938651 C T RYR3 Missense_Mutation p.R1289C 0.15 probably_damaging(0.939) TCGA-86-A456-01 15 42858824 42858824 T A HAUS2 Missense_Mutation p.M173K 0.25 deleterious(0.01) benign(0.005) TCGA-86-A456-01 15 43552615 43552615 A T TGM5 Missense_Mutation p.I58N 0.19 deleterious(0.02) possibly_damaging(0.706) TCGA-86-A456-01 15 43815215 43815215 C A MAP1A Missense_Mutation p.P515Q 0.32 possibly_damaging(0.831) TCGA-86-A456-01 15 43896340 43896340 C - STRC Frame_Shift_Del p.G1410Vfs*9 0.12 TCGA-86-A456-01 15 45814315 45814315 C G SLC30A4 Missense_Mutation p.D80H 0.08 deleterious(0) possibly_damaging(0.503) TCGA-86-A456-01 15 49800493 49800493 G A FAM227B Silent p.S309S 0.15 TCGA-86-A456-01 15 49800494 49800494 G A FAM227B Missense_Mutation p.S309F 0.15 tolerated(0.12) benign(0.424) TCGA-86-A456-01 15 57731072 57731072 G T CGNL1 Missense_Mutation p.R292L 0.15 deleterious(0.01) possibly_damaging(0.802) TCGA-86-A456-01 15 59813464 59813464 G T FAM81A Missense_Mutation p.V332F 0.22 deleterious(0) possibly_damaging(0.5) TCGA-86-A456-01 15 65777489 65777489 T C DPP8 Missense_Mutation p.N338S 0.17 deleterious(0) probably_damaging(0.996) TCGA-86-A456-01 15 72637969 72637969 C A HEXA Intron 0.31 TCGA-86-A456-01 15 74177417 74177417 G T TBC1D21 Missense_Mutation p.W184C 0.16 deleterious(0.01) probably_damaging(1) TCGA-86-A456-01 15 89421372 89421372 C A HAPLN3 Missense_Mutation p.K304N 0.24 deleterious(0.02) probably_damaging(0.976) TCGA-86-A456-01 15 90903832 90903833 - T ZNF774 Frame_Shift_Ins p.H257Lfs*38 0.16 TCGA-86-A456-01 16 1364038 1364038 G T UBE2I Missense_Mutation p.G3W 0.14 deleterious(0) probably_damaging(0.933) TCGA-86-A456-01 16 14346239 14346239 A T MKL2 Silent p.P811P 0.21 TCGA-86-A456-01 16 14978234 14978234 G A NOMO1 Silent p.G1039G 0.14 TCGA-86-A456-01 16 1994858 1994858 C T RPL3L Missense_Mutation p.E402K 0.15 tolerated_low_confidence(0.34) benign(0.002) TCGA-86-A456-01 16 20043298 20043298 G A GPR139 Missense_Mutation p.A274V 0.20 tolerated(0.06) probably_damaging(0.996) TCGA-86-A456-01 16 24373202 24373202 G T CACNG3 3'UTR 0.14 TCGA-86-A456-01 16 25235790 25235790 G A AQP8 Silent p.T165T 0.07 TCGA-86-A456-01 16 26147210 26147210 C G HS3ST4 Missense_Mutation p.L338V 0.14 tolerated(0.42) possibly_damaging(0.54) TCGA-86-A456-01 16 26147239 26147239 C A HS3ST4 Missense_Mutation p.F347L 0.04 deleterious(0) probably_damaging(0.999) TCGA-86-A456-01 16 26147240 26147240 C G HS3ST4 Missense_Mutation p.P348A 0.04 deleterious(0) possibly_damaging(0.899) TCGA-86-A456-01 16 28842379 28842379 C G ATXN2L Missense_Mutation p.P436R 0.14 deleterious(0) benign(0.277) TCGA-86-A456-01 16 31159900 31159900 G T PRSS36 Silent p.A123A 0.18 TCGA-86-A456-01 16 75148833 75148833 G A LDHD Nonsense_Mutation p.R121* 0.17 TCGA-86-A456-01 16 7657328 7657328 G A RBFOX1 Missense_Mutation p.E242K 0.11 deleterious(0) benign(0.135) TCGA-86-A456-01 17 10397754 10397754 G C MYH1 Missense_Mutation p.R1862G 0.20 deleterious(0.02) possibly_damaging(0.699) TCGA-86-A456-01 17 11550416 11550416 G T DNAH9 Missense_Mutation p.W666C 0.19 probably_damaging(1) TCGA-86-A456-01 17 16526756 16526756 T C ZNF624 Missense_Mutation p.R482G 0.32 tolerated(0.21) benign(0.423) TCGA-86-A456-01 17 21730971 21730971 G T UBBP4 Silent p.L91L 0.24 TCGA-86-A456-01 17 21731524 21731524 A G UBBP4 Missense_Mutation p.K200R 0.21 tolerated(0.08) benign(0.039) TCGA-86-A456-01 17 25972884 25972884 C G LGALS9 Intron 0.20 TCGA-86-A456-01 17 26107851 26107851 G T NOS2 Missense_Mutation p.P316T 0.31 deleterious(0) probably_damaging(1) TCGA-86-A456-01 17 27017988 27017988 G T SUPT6H Missense_Mutation p.Q1180H 0.25 deleterious(0.05) benign(0.118) TCGA-86-A456-01 17 28405523 28405523 G C EFCAB5 Splice_Site p.X1009_splice 0.11 TCGA-86-A456-01 17 28548678 28548678 C A SLC6A4 Missense_Mutation p.G100V 0.15 deleterious(0.02) probably_damaging(1) TCGA-86-A456-01 17 30986280 30986280 C T MYO1D Missense_Mutation p.R733H 0.14 deleterious(0.03) benign(0.043) TCGA-86-A456-01 17 37866340 37866340 G T ERBB2 Silent p.L215L 0.18 TCGA-86-A456-01 17 39340690 39340690 G T KRTAP4-1 Silent p.P139P 0.15 TCGA-86-A456-01 17 40962970 40962970 C A BECN1 Intron 0.20 TCGA-86-A456-01 17 44116020 44116020 T A KANSL1 Missense_Mutation p.S809C 0.15 tolerated(0.21) benign(0.012) TCGA-86-A456-01 17 4688876 4688876 G - VMO1 Frame_Shift_Del p.T131Rfs*27 0.20 TCGA-86-A456-01 17 48703930 48703930 A T CACNA1G Missense_Mutation p.S2318C 0.18 deleterious_low_confidence(0.05) benign(0.438) TCGA-86-A456-01 17 48827892 48827892 G T LUC7L3 Missense_Mutation p.S390I 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.608) TCGA-86-A456-01 17 49726580 49726580 C T CA10 Missense_Mutation p.M199I 0.10 tolerated(0.47) benign(0.031) TCGA-86-A456-01 17 52993207 52993207 A T TOM1L1 Missense_Mutation p.D235V 0.24 deleterious(0) probably_damaging(1) TCGA-86-A456-01 17 61902458 61902458 C T FTSJ3 Missense_Mutation p.E221K 0.07 deleterious(0.01) benign(0.254) TCGA-86-A456-01 17 63637115 63637115 T A CEP112 Missense_Mutation p.E922D 0.23 deleterious(0) possibly_damaging(0.802) TCGA-86-A456-01 17 74078568 74078568 C G ZACN Nonsense_Mutation p.S358* 0.13 TCGA-86-A456-01 17 80156237 80156237 C T CCDC57 Missense_Mutation p.E157K 0.19 deleterious(0.01) benign(0.248) TCGA-86-A456-01 17 8647018 8647018 G T CCDC42 Missense_Mutation p.L74M 0.12 tolerated(0.26) benign(0.361) TCGA-86-A456-01 18 29451006 29451006 C A TRAPPC8 Nonsense_Mutation p.E714* 0.23 TCGA-86-A456-01 18 3729141 3729141 T A DLGAP1 Missense_Mutation p.S529C 0.20 deleterious(0.02) benign(0.376) TCGA-86-A456-01 18 42532018 42532018 A T SETBP1 Missense_Mutation p.I905F 0.16 deleterious(0.04) benign(0.276) TCGA-86-A456-01 18 48473610 48473610 A G ME2 3'UTR 0.32 TCGA-86-A456-01 18 56409180 56409180 C G MALT1 Missense_Mutation p.P563A 0.07 deleterious(0.01) possibly_damaging(0.841) TCGA-86-A456-01 18 56585795 56585795 G T ZNF532 Silent p.G92G 0.18 TCGA-86-A456-01 18 56586561 56586561 C T ZNF532 Missense_Mutation p.P348S 0.06 deleterious(0) probably_damaging(1) TCGA-86-A456-01 18 77246359 77246359 C T NFATC1 Missense_Mutation p.A722V 0.04 tolerated(0.38) benign(0.004) TCGA-86-A456-01 18 8113641 8113641 G T PTPRM Missense_Mutation p.A672S 0.25 tolerated(0.41) benign(0.008) TCGA-86-A456-01 19 12429730 12429730 C G ZNF563 Missense_Mutation p.C370S 0.23 deleterious(0) probably_damaging(0.999) TCGA-86-A456-01 19 17743604 17743604 G CA UNC13A Frame_Shift_Ins p.P1139Cfs*2 0.12 TCGA-86-A456-01 19 18368831 18368831 C T KIAA1683 Nonsense_Mutation p.W1088* 0.25 TCGA-86-A456-01 19 18375991 18375991 G A KIAA1683 Missense_Mutation p.R787C 0.06 deleterious(0) benign(0.238) TCGA-86-A456-01 19 19153558 19153558 A T ARMC6 Missense_Mutation p.Q23L 0.16 deleterious_low_confidence(0.01) benign(0.003) TCGA-86-A456-01 19 2222453 2222453 G T DOT1L Silent p.G1095G 0.27 TCGA-86-A456-01 19 23927417 23927417 T C ZNF681 Missense_Mutation p.Y312C 0.15 tolerated(1) possibly_damaging(0.759) TCGA-86-A456-01 19 3013707 3013707 C A TLE2 Missense_Mutation p.S278I 0.14 deleterious(0.04) possibly_damaging(0.888) TCGA-86-A456-01 19 31040175 31040175 C A ZNF536 Missense_Mutation p.P1217T 0.20 tolerated_low_confidence(0.16) benign(0.014) TCGA-86-A456-01 19 31770550 31770550 T A TSHZ3 Missense_Mutation p.K50M 0.21 deleterious(0.01) possibly_damaging(0.808) TCGA-86-A456-01 19 34302442 34302442 G T KCTD15 Silent p.R226R 0.14 TCGA-86-A456-01 19 36303779 36303779 C A PRODH2 Missense_Mutation p.G53C 0.27 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-86-A456-01 19 36321859 36321859 C A NPHS1 Splice_Site p.X1161_splice 0.24 TCGA-86-A456-01 19 51021741 51021741 C A LRRC4B Missense_Mutation p.R410L 0.11 deleterious(0.01) benign(0.086) TCGA-86-A456-01 19 52376342 52376342 T A ZNF577 Missense_Mutation p.S301C 0.13 deleterious(0.01) probably_damaging(0.911) TCGA-86-A456-01 19 53058552 53058552 G T ZNF808 Missense_Mutation p.V795F 0.16 deleterious(0.01) benign(0.401) TCGA-86-A456-01 19 54177530 54177530 C T MIR498 RNA 0.21 TCGA-86-A456-01 19 54304485 54304485 G T NLRP12 Missense_Mutation p.L918M 0.21 deleterious(0) probably_damaging(0.98) TCGA-86-A456-01 19 55086269 55086269 C A LILRA2 Missense_Mutation p.Q142K 0.23 deleterious(0.05) possibly_damaging(0.758) TCGA-86-A456-01 19 55711857 55711857 C A PTPRH Silent p.V389V 0.13 TCGA-86-A456-01 19 9066640 9066640 A T MUC16 Missense_Mutation p.S6936T 0.24 unknown(0) TCGA-86-A456-01 19 9089301 9089301 G A MUC16 Silent p.L838L 0.05 TCGA-86-A456-01 1 10067718 10067718 A G RBP7 Missense_Mutation p.N55S 0.05 tolerated(0.26) benign(0) TCGA-86-A456-01 1 109479738 109479738 T C CLCC1 Silent p.P448P 0.16 TCGA-86-A456-01 1 109514125 109514125 C A WDR47 Missense_Mutation p.W904L 0.15 deleterious(0) probably_damaging(1) TCGA-86-A456-01 1 109656311 109656311 C T KIAA1324 5'Flank 0.13 TCGA-86-A456-01 1 110766120 110766120 A T KCNC4 Missense_Mutation p.I405F 0.14 tolerated(0.06) probably_damaging(0.998) TCGA-86-A456-01 1 11562937 11562937 G T PTCHD2 Silent p.L433L 0.26 TCGA-86-A456-01 1 118581914 118581914 C A SPAG17 Splice_Site p.X1107_splice 0.15 TCGA-86-A456-01 1 144917896 144917896 C T PDE4DIP Missense_Mutation p.D464N 0.03 tolerated(0.05) probably_damaging(0.959) TCGA-86-A456-01 1 149877345 149877345 C T SV2A Intron 0.19 TCGA-86-A456-01 1 151681768 151681768 G T CELF3 Silent p.R112R 0.13 TCGA-86-A456-01 1 152192017 152192017 G A HRNR Silent p.G696G 0.16 TCGA-86-A456-01 1 152800119 152800119 G T LCE1A Silent p.G57G 0.12 TCGA-86-A456-01 1 153122526 153122526 G T SPRR2G Missense_Mutation p.P21T 0.10 unknown(0) TCGA-86-A456-01 1 154076561 154076561 T A NUP210L Silent p.A582A 0.20 TCGA-86-A456-01 1 15541894 15541894 C G TMEM51 Missense_Mutation p.T104R 0.12 tolerated(0.22) benign(0.043) TCGA-86-A456-01 1 15809791 15809791 C A CELA2B Missense_Mutation p.P130H 0.15 tolerated(0.25) benign(0.02) TCGA-86-A456-01 1 158736079 158736079 A T OR6N1 Missense_Mutation p.Y132N 0.15 deleterious(0) probably_damaging(0.999) TCGA-86-A456-01 1 158747239 158747239 C A OR6N2 Missense_Mutation p.V63F 0.11 deleterious(0) possibly_damaging(0.594) TCGA-86-A456-01 1 159283912 159283912 A G OR10J3 Missense_Mutation p.C180R 0.17 deleterious(0) probably_damaging(0.998) TCGA-86-A456-01 1 162343753 162343753 G T C1orf111 3'UTR 0.14 TCGA-86-A456-01 1 171254425 171254425 C A FMO1 Silent p.P447P 0.15 TCGA-86-A456-01 1 175375718 175375718 C A TNR Missense_Mutation p.V45L 0.15 tolerated_low_confidence(0.31) benign(0.001) TCGA-86-A456-01 1 176668250 176668250 G T PAPPA2 Missense_Mutation p.D921Y 0.15 tolerated(0.16) possibly_damaging(0.907) TCGA-86-A456-01 1 183079768 183079768 G T LAMC1 Nonsense_Mutation p.E334* 0.12 TCGA-86-A456-01 1 190423890 190423890 A T BRINP3 Missense_Mutation p.F44Y 0.18 tolerated(0.08) benign(0.099) TCGA-86-A456-01 1 200974540 200974540 A G KIF21B Missense_Mutation p.S210P 0.12 deleterious(0) possibly_damaging(0.583) TCGA-86-A456-01 1 207933022 207933022 T C CD46 Missense_Mutation p.L143P 0.33 deleterious(0) probably_damaging(0.997) TCGA-86-A456-01 1 210796967 210796967 G T HHAT Missense_Mutation p.G449V 0.16 deleterious(0) probably_damaging(0.996) TCGA-86-A456-01 1 211093214 211093214 G T KCNH1 Silent p.T410T 0.20 TCGA-86-A456-01 1 216373399 216373399 G C USH2A Silent p.T1127T 0.17 TCGA-86-A456-01 1 216496819 216496819 C G USH2A Missense_Mutation p.G516A 0.25 probably_damaging(0.979) TCGA-86-A456-01 1 223285671 223285671 C A TLR5 Nonsense_Mutation p.G235* 0.16 TCGA-86-A456-01 1 236924458 236924458 C A ACTN2 Silent p.I837I 0.17 TCGA-86-A456-01 1 247586565 247586565 T C NLRP3 Missense_Mutation p.V106A 0.18 tolerated(0.33) benign(0.165) TCGA-86-A456-01 1 247587253 247587253 C A NLRP3 Silent p.R170R 0.11 TCGA-86-A456-01 1 247978693 247978693 G A OR14A16 Silent p.L113L 0.07 TCGA-86-A456-01 1 248512774 248512774 C A OR14C36 Missense_Mutation p.T233K 0.18 tolerated(1) benign(0.006) TCGA-86-A456-01 1 248525484 248525484 G T OR2T4 Missense_Mutation p.R201L 0.12 deleterious(0) benign(0.001) TCGA-86-A456-01 1 248525537 248525537 C A OR2T4 Missense_Mutation p.L219I 0.16 deleterious(0) probably_damaging(1) TCGA-86-A456-01 1 248551408 248551408 C T OR2T6 Missense_Mutation p.P167S 0.16 tolerated(0.07) possibly_damaging(0.513) TCGA-86-A456-01 1 248637427 248637427 C A OR2T3 Missense_Mutation p.A259D 0.07 deleterious(0) probably_damaging(0.982) TCGA-86-A456-01 1 248813405 248813405 G T OR2T27 Missense_Mutation p.L261M 0.10 deleterious(0.03) probably_damaging(0.995) TCGA-86-A456-01 1 3342755 3342755 G T PRDM16 Nonsense_Mutation p.E1084* 0.20 TCGA-86-A456-01 1 35561464 35561464 G T ZMYM1 Silent p.L47L 0.21 TCGA-86-A456-01 1 36935426 36935426 C A CSF3R Missense_Mutation p.R434I 0.20 tolerated(0.06) possibly_damaging(0.708) TCGA-86-A456-01 1 39321547 39321547 G A RRAGC Silent p.H158H 0.22 TCGA-86-A456-01 1 39799677 39799677 G A MACF1 Intron 0.04 TCGA-86-A456-01 1 43239266 43239266 C T C1orf50 Silent p.N76N 0.14 TCGA-86-A456-01 1 44422327 44422327 A C IPO13 Missense_Mutation p.N353T 0.13 deleterious(0.01) benign(0.065) TCGA-86-A456-01 1 55119085 55119086 - T MROH7 Frame_Shift_Ins p.L163Ffs*10 0.11 TCGA-86-A456-01 1 57528578 57528578 C A DAB1 Silent p.V234V 0.10 TCGA-86-A456-01 1 66064345 66064345 T C LEPR Silent p.A284A 0.11 TCGA-86-A456-01 1 6680254 6680254 G T PHF13 Missense_Mutation p.S178I 0.20 deleterious(0.04) possibly_damaging(0.823) TCGA-86-A456-01 1 67147697 67147697 G T SGIP1 Silent p.P320P 0.16 TCGA-86-A456-01 1 67469930 67469930 T A SLC35D1 3'UTR 0.21 TCGA-86-A456-01 1 75622604 75622604 C G LHX8 Silent p.R279R 0.10 TCGA-86-A456-01 1 85403489 85403489 A G MCOLN2 Silent p.Y428Y 0.19 TCGA-86-A456-01 1 93170178 93170178 C A EVI5 Missense_Mutation p.W135C 0.15 deleterious(0) probably_damaging(0.981) TCGA-86-A456-01 20 15918139 15918139 C G MACROD2 Missense_Mutation p.T286S 0.06 tolerated_low_confidence(0.26) benign(0.023) TCGA-86-A456-01 20 4705792 4705792 C A PRND 3'UTR 0.36 TCGA-86-A456-01 20 49620679 49620679 C A KCNG1 Missense_Mutation p.R480L 0.09 deleterious(0.01) possibly_damaging(0.601) TCGA-86-A456-01 20 51872924 51872924 C A TSHZ2 Nonsense_Mutation p.S976* 0.11 TCGA-86-A456-01 20 62851065 62851065 G T MYT1 Splice_Site p.X658_splice 0.16 TCGA-86-A456-01 21 35514733 35514733 C T MRPS6 Missense_Mutation p.P71S 0.10 tolerated(0.06) possibly_damaging(0.759) TCGA-86-A456-01 21 41516530 41516530 G T DSCAM Nonsense_Mutation p.Y1049* 0.17 TCGA-86-A456-01 21 42629148 42629148 C T BACE2 Missense_Mutation p.P400S 0.11 tolerated(1) benign(0.005) TCGA-86-A456-01 21 44524452 44524452 C A U2AF1 Silent p.R35R 0.08 TCGA-86-A456-01 22 17073458 17073458 G A CCT8L2 5'UTR 0.09 TCGA-86-A456-01 22 17586480 17586480 G C IL17RA Splice_Site p.X311_splice 0.06 TCGA-86-A456-01 22 18020416 18020416 C T CECR2 Missense_Mutation p.S583F 0.10 deleterious(0.03) possibly_damaging(0.841) TCGA-86-A456-01 22 21064272 21064272 C A PI4KA Missense_Mutation p.A2033S 0.06 tolerated(0.13) benign(0.233) TCGA-86-A456-01 22 22749534 22749534 C T IGLV7-43 Nonsense_Mutation p.Q20* 0.08 TCGA-86-A456-01 22 32464548 32464548 C T SLC5A1 Silent p.S146S 0.07 TCGA-86-A456-01 22 32889156 32889156 C A FBXO7 Missense_Mutation p.F344L 0.09 tolerated(0.67) benign(0.004) TCGA-86-A456-01 22 34046374 34046374 C A LARGE Missense_Mutation p.Q129H 0.12 tolerated(0.12) benign(0.002) TCGA-86-A456-01 22 37326804 37326804 C T CSF2RB Missense_Mutation p.T315I 0.21 tolerated(0.12) benign(0.098) TCGA-86-A456-01 22 38120265 38120265 A T TRIOBP Missense_Mutation p.N568Y 0.11 tolerated_low_confidence(0.09) benign(0.114) TCGA-86-A456-01 22 44585058 44585058 C G PARVG Missense_Mutation p.H104Q 0.28 tolerated(0.86) benign(0.007) TCGA-86-A456-01 2 109365489 109365489 C T RANBP2 Nonsense_Mutation p.Q393* 0.07 TCGA-86-A456-01 2 113089821 113089821 G T ZC3H6 Missense_Mutation p.G1109V 0.11 tolerated(0.2) benign(0.025) TCGA-86-A456-01 2 133483248 133483248 C A NCKAP5 Nonsense_Mutation p.G1889* 0.17 TCGA-86-A456-01 2 141243049 141243049 C A LRP1B Missense_Mutation p.W3096C 0.13 probably_damaging(0.926) TCGA-86-A456-01 2 153463899 153463899 G T FMNL2 Missense_Mutation p.R308M 0.37 benign(0.242) TCGA-86-A456-01 2 168100292 168100292 T C XIRP2 Missense_Mutation p.M797T 0.14 benign(0.073) TCGA-86-A456-01 2 176959356 176959356 G A HOXD13 Silent p.S310S 0.09 TCGA-86-A456-01 2 179486381 179486381 G T TTN Missense_Mutation p.P15057H 0.10 TCGA-86-A456-01 2 191927646 191927646 G C STAT4 Missense_Mutation p.C261W 0.15 tolerated(1) benign(0.002) TCGA-86-A456-01 2 197559822 197559822 A T CCDC150 Missense_Mutation p.K521M 0.17 deleterious(0.02) probably_damaging(0.997) TCGA-86-A456-01 2 203630413 203630413 C T FAM117B Nonsense_Mutation p.R566* 0.11 TCGA-86-A456-01 2 208986412 208986412 G T CRYGD Silent p.V170V 0.33 TCGA-86-A456-01 2 209116292 209116292 C A IDH1 Splice_Site 0.28 TCGA-86-A456-01 2 234102515 234102515 C G INPP5D Missense_Mutation p.T823R 0.11 deleterious(0) probably_damaging(0.99) TCGA-86-A456-01 2 242066605 242066605 C A PASK Silent p.R575R 0.20 TCGA-86-A456-01 2 32396426 32396426 T C SLC30A6 Missense_Mutation p.V25A 0.13 deleterious(0.01) possibly_damaging(0.547) TCGA-86-A456-01 2 37410618 37410618 G C SULT6B1 Missense_Mutation p.H80D 0.14 deleterious(0) probably_damaging(1) TCGA-86-A456-01 2 40657052 40657052 G T SLC8A1 Silent p.T123T 0.06 TCGA-86-A456-01 2 44428678 44428678 G T PPM1B Missense_Mutation p.D114Y 0.22 deleterious(0) probably_damaging(1) TCGA-86-A456-01 2 69092824 69092824 C G BMP10 Missense_Mutation p.G405A 0.09 deleterious(0) probably_damaging(1) TCGA-86-A456-01 2 69664547 69664547 G T NFU1 Missense_Mutation p.A3E 0.40 deleterious_low_confidence(0.01) unknown(0) TCGA-86-A456-01 2 89291943 89291943 C A IGKV1-8 Missense_Mutation p.Q110H 0.14 deleterious(0.05) benign(0.165) TCGA-86-A456-01 2 97463258 97463258 C T CNNM4 Nonsense_Mutation p.R519* 0.11 TCGA-86-A456-01 3 107096337 107096337 C T CCDC54 5'UTR 0.23 TCGA-86-A456-01 3 110830888 110830888 G T PVRL3 Nonsense_Mutation p.G58* 0.06 TCGA-86-A456-01 3 118865301 118865301 C A C3orf30 Missense_Mutation p.R89S 0.31 tolerated(0.59) benign(0.004) TCGA-86-A456-01 3 129284753 129284753 C T PLXND1 Silent p.Q1433Q 0.13 TCGA-86-A456-01 3 138665256 138665256 G T FOXL2 Silent p.R103R 0.22 TCGA-86-A456-01 3 142116293 142116293 C A XRN1 Missense_Mutation p.L739F 0.17 deleterious(0.02) benign(0.024) TCGA-86-A456-01 3 14814314 14814314 G A C3orf20 Missense_Mutation p.V883M 0.28 tolerated_low_confidence(0.28) benign(0.067) TCGA-86-A456-01 3 150659443 150659443 A G CLRN1 Missense_Mutation p.M120T 0.21 tolerated(0.06) benign(0.438) TCGA-86-A456-01 3 153909093 153909093 C T ARHGEF26 Silent p.S552S 0.21 TCGA-86-A456-01 3 160099323 160099323 T A IFT80 Missense_Mutation p.Q76L 0.07 tolerated(0.28) benign(0.003) TCGA-86-A456-01 3 173998772 173998772 T G NLGN1 Silent p.T717T 0.18 TCGA-86-A456-01 3 173998781 173998781 T C NLGN1 Silent p.N720N 0.23 TCGA-86-A456-01 3 186947650 186947650 C T MASP1 3'Flank 0.15 TCGA-86-A456-01 3 195800873 195800873 C A TFRC Missense_Mutation p.R121L 0.14 tolerated(0.72) benign(0.001) TCGA-86-A456-01 3 196387300 196387300 G T NRROS Silent p.L262L 0.14 TCGA-86-A456-01 3 21792427 21792427 C A ZNF385D 5'UTR 0.21 TCGA-86-A456-01 3 36779550 36779550 C A DCLK3 Missense_Mutation p.D201Y 0.20 deleterious(0) possibly_damaging(0.873) TCGA-86-A456-01 3 38592988 38592988 G C SCN5A Missense_Mutation p.I1625M 0.10 deleterious(0) possibly_damaging(0.517) TCGA-86-A456-01 3 38913708 38913708 C T SCN11A Silent p.A1157A 0.12 TCGA-86-A456-01 3 405044 405044 C A CHL1 Silent p.V521V 0.18 TCGA-86-A456-01 3 46399835 46399835 G T CCR2 Missense_Mutation p.G273C 0.17 tolerated(0.18) probably_damaging(0.959) TCGA-86-A456-01 3 47037035 47037035 A T NBEAL2 Missense_Mutation p.T604S 0.20 tolerated(1) benign(0.01) TCGA-86-A456-01 3 49725032 49725032 C A MST1 Silent p.T104T 0.14 TCGA-86-A456-01 3 50231060 50231060 G T GNAT1 Missense_Mutation p.R138L 0.19 deleterious(0) probably_damaging(0.999) TCGA-86-A456-01 3 56647649 56647649 C T CCDC66 Silent p.R479R 0.07 TCGA-86-A456-01 3 57908625 57908625 A G SLMAP Missense_Mutation p.T740A 0.10 tolerated_low_confidence(0.13) possibly_damaging(0.73) TCGA-86-A456-01 3 58853584 58853584 C A C3orf67 Missense_Mutation p.R240L 0.12 tolerated(0.47) benign(0.164) TCGA-86-A456-01 3 62253428 62253428 G A PTPRG Nonsense_Mutation p.W936* 0.10 TCGA-86-A456-01 3 7620126 7620126 G A GRM7 Nonsense_Mutation p.W511* 0.19 TCGA-86-A456-01 3 96706462 96706462 G T EPHA6 Missense_Mutation p.A247S 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-86-A456-01 3 97806608 97806608 G A OR5AC2 Missense_Mutation p.A198T 0.25 tolerated(0.39) benign(0.053) TCGA-86-A456-01 4 121958365 121958365 T C NDNF Missense_Mutation p.H254R 0.25 tolerated(0.15) benign(0.001) TCGA-86-A456-01 4 3526662 3526662 C T LRPAP1 Silent p.K107K 0.16 TCGA-86-A456-01 4 42051439 42051439 C T SLC30A9 Silent p.T261T 0.16 TCGA-86-A456-01 4 49046819 49046819 A T CWH43 Missense_Mutation p.D607V 0.14 deleterious(0) probably_damaging(1) TCGA-86-A456-01 4 5564593 5564593 C A EVC2 Missense_Mutation p.R1303S 0.16 tolerated(0.4) benign(0.003) TCGA-86-A456-01 4 5564609 5564609 G C EVC2 Missense_Mutation p.A1298G 0.14 tolerated(0.13) possibly_damaging(0.772) TCGA-86-A456-01 4 72994399 72994399 A G NPFFR2 Missense_Mutation p.N133D 0.23 tolerated(0.08) possibly_damaging(0.844) TCGA-86-A456-01 4 80328415 80328415 C A GK2 Missense_Mutation p.A314S 0.24 deleterious(0.04) benign(0.296) TCGA-86-A456-01 5 110097367 110097367 G A SLC25A46 Missense_Mutation p.G381E 0.06 deleterious(0) probably_damaging(1) TCGA-86-A456-01 5 127686571 127686571 C A FBN2 Missense_Mutation p.R934L 0.14 tolerated(0.31) benign(0.059) TCGA-86-A456-01 5 137542264 137542264 T C CDC23 Missense_Mutation p.Y115C 0.16 tolerated(0.13) benign(0.035) TCGA-86-A456-01 5 139221972 139221972 C T PSD2 Silent p.L743L 0.16 TCGA-86-A456-01 5 140167126 140167126 C A PCDHA1 Missense_Mutation p.S417R 0.25 tolerated_low_confidence(0.37) benign(0.008) TCGA-86-A456-01 5 140182427 140182427 G T PCDHA3 Missense_Mutation p.V549L 0.09 deleterious_low_confidence(0.04) possibly_damaging(0.553) TCGA-86-A456-01 5 140432493 140432493 G T PCDHB1 Missense_Mutation p.D480Y 0.11 deleterious(0) probably_damaging(1) TCGA-86-A456-01 5 140559943 140559943 G T PCDHB8 Missense_Mutation p.Q776H 0.10 tolerated_low_confidence(0.56) benign(0.004) TCGA-86-A456-01 5 140731393 140731393 C A PCDHGB1 Silent p.R522R 0.06 TCGA-86-A456-01 5 140736302 140736302 G T PCDHGA4 Missense_Mutation p.G512V 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-86-A456-01 5 140960384 140960384 C A DIAPH1 Missense_Mutation p.A251S 0.10 unknown(0) TCGA-86-A456-01 5 147665615 147665615 G T SPINK13 3'UTR 0.07 TCGA-86-A456-01 5 148406265 148406265 G A SH3TC2 Missense_Mutation p.P975S 0.10 deleterious(0.03) possibly_damaging(0.905) TCGA-86-A456-01 5 172196065 172196065 G A DUSP1 Silent p.I268I 0.06 TCGA-86-A456-01 5 176047756 176047756 G T SNCB 3'UTR 0.16 TCGA-86-A456-01 5 178552041 178552041 G T ADAMTS2 Missense_Mutation p.P964H 0.11 deleterious(0) probably_damaging(1) TCGA-86-A456-01 5 180582309 180582309 C G OR2V2 Missense_Mutation p.R123G 0.12 deleterious(0) possibly_damaging(0.895) TCGA-86-A456-01 5 21751763 21751763 G T CDH12 3'UTR 0.22 TCGA-86-A456-01 5 21755871 21755871 C T CDH12 Missense_Mutation p.E572K 0.06 tolerated(0.86) benign(0.041) TCGA-86-A456-01 5 32061178 32061178 A G PDZD2 Missense_Mutation p.I797V 0.25 deleterious(0.03) possibly_damaging(0.765) TCGA-86-A456-01 5 35910561 35910561 G T CAPSL Silent p.V74V 0.11 TCGA-86-A456-01 5 36066861 36066861 C G UGT3A2 Missense_Mutation p.G11R 0.25 tolerated(0.36) possibly_damaging(0.653) TCGA-86-A456-01 5 65081650 65081650 G T NLN Missense_Mutation p.A291S 0.15 tolerated(0.39) possibly_damaging(0.671) TCGA-86-A456-01 5 72469550 72469550 G T TMEM174 Silent p.V160V 0.07 TCGA-86-A456-01 5 72469551 72469551 G T TMEM174 Missense_Mutation p.V161L 0.07 tolerated(0.75) benign(0.018) TCGA-86-A456-01 5 81474313 81474313 G C ATG10 Silent p.G120G 0.16 TCGA-86-A456-01 5 82808189 82808189 G A VCAN Missense_Mutation p.S339N 0.17 tolerated(0.05) possibly_damaging(0.861) TCGA-86-A456-01 5 89953738 89953738 A T GPR98 Missense_Mutation p.R1465S 0.08 possibly_damaging(0.849) TCGA-86-A456-01 5 89990067 89990067 G T GPR98 Silent p.V2498V 0.06 TCGA-86-A456-01 5 95759040 95759040 G T PCSK1 Missense_Mutation p.H174N 0.15 deleterious(0) probably_damaging(1) TCGA-86-A456-01 5 9629775 9629775 T A TAS2R1 Nonsense_Mutation p.K124* 0.14 TCGA-86-A456-01 6 100838303 100838303 C G SIM1 Silent p.L745L 0.24 TCGA-86-A456-01 6 134312437 134312437 C T SLC2A12 Silent p.V570V 0.12 TCGA-86-A456-01 6 138202269 138202269 G A TNFAIP3 Missense_Mutation p.S729N 0.05 tolerated(0.28) benign(0.014) TCGA-86-A456-01 6 15523328 15523328 C A DTNBP1 Nonsense_Mutation p.E312* 0.20 TCGA-86-A456-01 6 28194986 28194986 C T ZSCAN9 Missense_Mutation p.R42C 0.08 tolerated(0.1) benign(0.003) TCGA-86-A456-01 6 28471964 28471964 G C GPX6 3'UTR 0.19 TCGA-86-A456-01 6 29455494 29455494 C A MAS1L Missense_Mutation p.M62I 0.17 tolerated(0.45) benign(0.041) TCGA-86-A456-01 6 31936260 31936260 T C SKIV2L Missense_Mutation p.L1005P 0.21 deleterious(0.03) probably_damaging(0.995) TCGA-86-A456-01 6 32122518 32122518 G T PPT2 Silent p.S55S 0.12 TCGA-86-A456-01 6 33282863 33282863 T C ZBTB22 Missense_Mutation p.S611G 0.19 tolerated_low_confidence(0.73) benign(0) TCGA-86-A456-01 6 38690811 38690811 G A DNAH8 5'Flank 0.21 TCGA-86-A456-01 6 38919281 38919281 A T DNAH8 Nonsense_Mutation p.K3929* 0.16 TCGA-86-A456-01 6 39040750 39040750 G A GLP1R Missense_Mutation p.A208T 0.23 tolerated(0.54) probably_damaging(0.993) TCGA-86-A456-01 6 39040751 39040751 C G GLP1R Missense_Mutation p.A208G 0.22 tolerated(0.36) probably_damaging(0.988) TCGA-86-A456-01 6 43013735 43013735 C T CUL7 Missense_Mutation p.E1003K 0.14 tolerated(0.08) benign(0.382) TCGA-86-A456-01 6 44272935 44272935 G A AARS2 Missense_Mutation p.H479Y 0.17 tolerated(1) benign(0.362) TCGA-86-A456-01 6 49754016 49754016 G C PGK2 Missense_Mutation p.N295K 0.17 deleterious(0.04) benign(0.01) TCGA-86-A456-01 6 51923237 51923237 C A PKHD1 Missense_Mutation p.G466W 0.15 deleterious(0.02) probably_damaging(1) TCGA-86-A456-01 6 55198718 55198718 G T GFRAL Nonsense_Mutation p.G98* 0.16 TCGA-86-A456-01 6 56347592 56347592 C A DST Silent p.R4474R 0.23 TCGA-86-A456-01 6 89871932 89871932 G A PM20D2 Missense_Mutation p.D421N 0.06 deleterious(0) benign(0.027) TCGA-86-A456-01 7 100075446 100075446 G A TSC22D4 Silent p.F72F 0.33 TCGA-86-A456-01 7 103293174 103293174 A G RELN Silent p.P529P 0.13 TCGA-86-A456-01 7 122130324 122130324 C A CADPS2 Missense_Mutation p.G555C 0.08 deleterious(0) probably_damaging(0.939) TCGA-86-A456-01 7 123595072 123595072 G T SPAM1 Missense_Mutation p.G326C 0.07 deleterious(0) probably_damaging(1) TCGA-86-A456-01 7 126086289 126086289 G A GRM8 Silent p.F856F 0.05 TCGA-86-A456-01 7 127013740 127013740 C - ZNF800 Frame_Shift_Del p.I552* 0.17 TCGA-86-A456-01 7 127235690 127235690 G C FSCN3 Silent p.R158R 0.21 TCGA-86-A456-01 7 128491663 128491663 C A FLNC Silent p.P1941P 0.16 TCGA-86-A456-01 7 129919353 129919353 G A CPA2 Missense_Mutation p.A280T 0.08 deleterious(0.01) probably_damaging(0.955) TCGA-86-A456-01 7 135328039 135328039 A G NUP205 Missense_Mutation p.D1831G 0.11 deleterious(0.01) benign(0.284) TCGA-86-A456-01 7 141478744 141478744 G T TAS2R4 Missense_Mutation p.Q152H 0.14 tolerated(0.17) benign(0.023) TCGA-86-A456-01 7 142881464 142881464 T A TAS2R39 Missense_Mutation p.L318Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-86-A456-01 7 30795480 30795480 A G INMT 3'UTR 0.18 TCGA-86-A456-01 7 37780319 37780319 G T GPR141 Silent p.V108V 0.23 TCGA-86-A456-01 7 44097389 44097389 G A DBNL Silent p.V161V 0.06 TCGA-86-A456-01 7 45632413 45632413 G T ADCY1 Missense_Mutation p.R232L 0.08 deleterious(0.01) probably_damaging(0.954) TCGA-86-A456-01 7 48315655 48315655 A T ABCA13 Missense_Mutation p.Q2131L 0.20 benign(0.044) TCGA-86-A456-01 7 8099879 8099879 G T GLCCI1 Splice_Site p.X322_splice 0.17 TCGA-86-A456-01 7 86468493 86468493 C A GRM3 Missense_Mutation p.P555T 0.20 deleterious(0) probably_damaging(1) TCGA-86-A456-01 7 86468505 86468505 C A GRM3 Missense_Mutation p.L559I 0.19 tolerated(0.2) probably_damaging(0.998) TCGA-86-A456-01 7 95750532 95750532 T A SLC25A13 Missense_Mutation p.T668S 0.14 tolerated_low_confidence(0.17) benign(0.009) TCGA-86-A456-01 7 99457479 99457479 C T CYP3A43 Nonsense_Mutation p.Q298* 0.04 TCGA-86-A456-01 7 99795782 99795782 A G STAG3 Missense_Mutation p.I413V 0.09 tolerated(0.32) benign(0.1) TCGA-86-A456-01 8 104427291 104427291 C G DCAF13 Missense_Mutation p.L25V 0.14 benign(0.005) TCGA-86-A456-01 8 105503739 105503739 G A LRP12 Missense_Mutation p.A581V 0.19 deleterious(0) probably_damaging(0.997) TCGA-86-A456-01 8 110445403 110445403 G C PKHD1L1 Missense_Mutation p.V1100L 0.03 deleterious(0.01) benign(0.232) TCGA-86-A456-01 8 113267504 113267504 C A CSMD3 Missense_Mutation p.G3339C 0.23 deleterious(0) benign(0.179) TCGA-86-A456-01 8 113694713 113694713 C T CSMD3 Missense_Mutation p.D879N 0.21 deleterious(0.05) possibly_damaging(0.881) TCGA-86-A456-01 8 116426463 116426463 C T TRPS1 Missense_Mutation p.E1225K 0.10 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-86-A456-01 8 121457586 121457586 C A MRPL13 5'UTR 0.22 TCGA-86-A456-01 8 144946972 144946972 C A EPPK1 Missense_Mutation p.W150C 0.27 probably_damaging(0.964) TCGA-86-A456-01 8 146017200 146017200 C T RPL8 Missense_Mutation p.E80K 0.06 deleterious(0) probably_damaging(0.994) TCGA-86-A456-01 8 146107654 146107654 G T ZNF250 Missense_Mutation p.P310Q 0.15 deleterious(0) probably_damaging(1) TCGA-86-A456-01 8 19811772 19811772 G T LPL Missense_Mutation p.G228V 0.23 deleterious(0) probably_damaging(1) TCGA-86-A456-01 8 2832090 2832090 A T CSMD1 Missense_Mutation p.F2875I 0.25 possibly_damaging(0.71) TCGA-86-A456-01 8 53569770 53569770 T A RB1CC1 Missense_Mutation p.E873D 0.14 tolerated_low_confidence(0.53) benign(0.008) TCGA-86-A456-01 8 68178260 68178260 T C ARFGEF1 Missense_Mutation p.I702V 0.37 tolerated(0.12) benign(0.108) TCGA-86-A456-01 8 69351821 69351821 G T C8orf34 Nonsense_Mutation p.G139* 0.18 TCGA-86-A456-01 8 73480035 73480035 A G KCNB2 Silent p.P22P 0.25 TCGA-86-A456-01 8 76456080 76456081 AG - HNF4G Frame_Shift_Del p.D42Qfs*25 0.18 TCGA-86-A456-01 8 86352027 86352027 G T CA3 Missense_Mutation p.D41Y 0.32 deleterious(0) probably_damaging(1) TCGA-86-A456-01 8 87076238 87076238 G C PSKH2 Missense_Mutation p.L270V 0.25 deleterious(0) probably_damaging(0.989) TCGA-86-A456-01 8 8747633 8747633 G A MFHAS1 Missense_Mutation p.T979I 0.14 deleterious(0) benign(0.446) TCGA-86-A456-01 8 92007999 92007999 C A TMEM55A Missense_Mutation p.W227L 0.16 deleterious(0) probably_damaging(0.973) TCGA-86-A456-01 8 92375751 92375751 G T SLC26A7 Missense_Mutation p.K491N 0.19 tolerated(0.2) benign(0.031) TCGA-86-A456-01 8 95752001 95752001 G T DPY19L4 Silent p.A198A 0.15 TCGA-86-A456-01 8 99718853 99718853 C A STK3 Missense_Mutation p.A204S 0.11 tolerated(0.08) possibly_damaging(0.475) TCGA-86-A456-01 9 113562732 113562732 C A MUSK Missense_Mutation p.P692T 0.06 tolerated(0.58) possibly_damaging(0.752) TCGA-86-A456-01 9 125009802 125009802 C A RBM18 Missense_Mutation p.V108L 0.10 tolerated(0.51) benign(0.035) TCGA-86-A456-01 9 131843400 131843400 C G DOLPP1 5'UTR 0.06 TCGA-86-A456-01 9 139909953 139909953 C A ABCA2 Missense_Mutation p.G1204C 0.14 deleterious(0) probably_damaging(1) TCGA-86-A456-01 9 32634213 32634213 C A TAF1L Missense_Mutation p.W455C 0.19 deleterious(0) probably_damaging(0.926) TCGA-86-A456-01 9 32634214 32634214 C G TAF1L Missense_Mutation p.W455S 0.19 deleterious(0) possibly_damaging(0.864) TCGA-86-A456-01 9 32634506 32634506 C A TAF1L Missense_Mutation p.A358S 0.15 tolerated(0.06) benign(0.019) TCGA-86-A456-01 9 33270625 33270625 G T CHMP5 Nonsense_Mutation p.E76* 0.08 TCGA-86-A456-01 9 34658567 34658567 C T IL11RA Missense_Mutation p.P233S 0.08 deleterious(0) benign(0.343) TCGA-86-A456-01 9 39118174 39118174 C A CNTNAP3 Missense_Mutation p.K721N 0.11 deleterious(0) benign(0.265) TCGA-86-A456-01 9 87636388 87636388 T C NTRK2 3'UTR 0.13 TCGA-86-A456-01 X 102338594 102338594 C T NXF3 Silent p.E126E 0.21 TCGA-86-A456-01 X 105970490 105970490 G T RNF128 Missense_Mutation p.W116L 0.08 deleterious(0) probably_damaging(1) TCGA-86-A456-01 X 107413872 107413872 G A COL4A6 Missense_Mutation p.P1155S 0.08 possibly_damaging(0.808) TCGA-86-A456-01 X 107977960 107977960 C A IRS4 Missense_Mutation p.G539C 0.15 deleterious_low_confidence(0.02) unknown(0) TCGA-86-A456-01 X 107978078 107978078 C A IRS4 Silent p.R499R 0.08 TCGA-86-A456-01 X 109764988 109764988 G T TDGF1P3 RNA 0.25 TCGA-86-A456-01 X 119500469 119500469 G C ATP1B4 Silent p.S51S 0.14 TCGA-86-A456-01 X 120007834 120007834 G A CT47B1 Silent p.A272A 0.09 TCGA-86-A456-01 X 122616861 122616861 A T GRIA3 Missense_Mutation p.Y884F 0.10 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-86-A456-01 X 125686235 125686235 C A DCAF12L1 Silent p.T119T 0.07 TCGA-86-A456-01 X 129270701 129270701 C A AIFM1 Missense_Mutation p.V361F 0.14 deleterious(0) probably_damaging(0.999) TCGA-86-A456-01 X 129349169 129349169 C T ZNF280C Missense_Mutation p.M659I 0.07 tolerated(0.29) benign(0.007) TCGA-86-A456-01 X 135961219 135961219 C A RBMX Missense_Mutation p.S58I 0.05 deleterious(0) possibly_damaging(0.713) TCGA-86-A456-01 X 139038302 139038302 C A CXorf66 Missense_Mutation p.R280M 0.22 deleterious(0.01) benign(0.005) TCGA-86-A456-01 X 139586623 139586623 C G SOX3 Missense_Mutation p.K201N 0.14 deleterious(0) probably_damaging(0.976) TCGA-86-A456-01 X 140995518 140995518 G A MAGEC1 Silent p.Q776Q 0.08 TCGA-86-A456-01 X 140996536 140996536 G A MAGEC1 Missense_Mutation p.A1116T 0.11 deleterious(0) unknown(0) TCGA-86-A456-01 X 146341192 146341192 G T MIR509-3 RNA 0.08 TCGA-86-A456-01 X 147743629 147743629 G T AFF2 Missense_Mutation p.Q127H 0.13 tolerated(0.15) probably_damaging(0.994) TCGA-86-A456-01 X 147743630 147743630 G T AFF2 Missense_Mutation p.D128Y 0.13 tolerated(1) probably_damaging(0.999) TCGA-86-A456-01 X 152845650 152845650 T C ATP2B3 Missense_Mutation p.I1186T 0.30 deleterious_low_confidence(0.03) possibly_damaging(0.493) TCGA-86-A456-01 X 153132860 153132860 G T L1CAM Silent p.G696G 0.09 TCGA-86-A456-01 X 153587763 153587763 G T FLNA Missense_Mutation p.T1385K 0.12 tolerated(0.16) benign(0.091) TCGA-86-A456-01 X 155004578 155004578 C A SPRY3 3'UTR 0.21 TCGA-86-A456-01 X 155237272 155237272 G T IL9R Missense_Mutation p.Q324H 0.24 deleterious(0) probably_damaging(0.999) TCGA-86-A456-01 X 18912559 18912559 G A PHKA2 Intron 0.12 TCGA-86-A456-01 X 29973851 29973851 G C IL1RAPL1 Missense_Mutation p.E669Q 0.19 tolerated_low_confidence(0.65) benign(0.005) TCGA-86-A456-01 X 30260295 30260295 C A MAGEB4 Missense_Mutation p.R15S 0.14 deleterious(0) probably_damaging(0.998) TCGA-86-A456-01 X 31341772 31341772 G A DMD Missense_Mutation p.S3056F 0.17 probably_damaging(0.973) TCGA-86-A456-01 X 31676241 31676241 G T DMD Silent p.R2631R 0.09 TCGA-86-A456-01 X 32591745 32591745 T A DMD Missense_Mutation p.S572C 0.09 benign(0.299) TCGA-86-A456-01 X 37028994 37028994 G T FAM47C Missense_Mutation p.E837D 0.10 tolerated(0.07) probably_damaging(0.93) TCGA-86-A456-01 X 37850306 37850306 G T CXorf27 Missense_Mutation p.A72S 0.10 deleterious(0.05) benign(0.086) TCGA-86-A456-01 X 37850308 37850308 C T CXorf27 Silent p.A72A 0.25 TCGA-86-A456-01 X 41029419 41029419 G T USP9X Silent p.V936V 0.17 TCGA-86-A456-01 X 41075556 41075556 T C USP9X Silent p.D1912D 0.20 TCGA-86-A456-01 X 44703528 44703528 C A DUSP21 Silent p.A50A 0.23 TCGA-86-A456-01 X 48566050 48566050 C A SUV39H1 3'UTR 0.09 TCGA-86-A456-01 X 48972291 48972291 C A GPKOW Missense_Mutation p.R365L 0.09 deleterious(0) probably_damaging(1) TCGA-86-A456-01 X 49108031 49108031 C A FOXP3 Intron 0.16 TCGA-86-A456-01 X 49127101 49127101 G A PPP1R3F Missense_Mutation p.A257T 0.20 deleterious(0.05) probably_damaging(1) TCGA-86-A456-01 X 50213335 50213335 G T DGKK RNA 0.13 TCGA-86-A456-01 X 53571671 53571671 C A HUWE1 Missense_Mutation p.G3701C 0.08 unknown(0) TCGA-86-A456-01 X 5821159 5821159 G A NLGN4X Silent p.S520S 0.13 TCGA-86-A456-01 X 63411187 63411187 G T AMER1 Silent p.G660G 0.19 TCGA-86-A456-01 X 63551458 63551458 T A MTMR8 Missense_Mutation p.Q444L 0.17 deleterious(0) benign(0.24) TCGA-86-A456-01 X 69890281 69890281 G C TEX11 Silent p.T457T 0.21 TCGA-86-A456-01 X 70326388 70326388 G T CXorf65 Missense_Mutation p.H7N 0.11 deleterious(0) probably_damaging(0.979) TCGA-86-A456-01 X 79286414 79286414 C T TBX22 Missense_Mutation p.P456L 0.27 deleterious(0.01) possibly_damaging(0.629) TCGA-86-A456-01 X 79978180 79978180 G A BRWD3 Missense_Mutation p.P586L 0.10 deleterious(0.03) benign(0.302) TCGA-86-A456-01 X 84525963 84525963 A T ZNF711 Missense_Mutation p.E472V 0.09 tolerated(0.11) possibly_damaging(0.735) TCGA-86-A456-01 X 86773170 86773170 C A KLHL4 Missense_Mutation p.Q92K 0.12 tolerated_low_confidence(0.82) benign(0.001) TCGA-86-A4JF-01 10 101455815 101455815 G A ENTPD7 Missense_Mutation p.G316R 0.08 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 10 101636983 101636983 C G DNMBP Missense_Mutation p.E1553D 0.24 tolerated(0.11) probably_damaging(0.923) TCGA-86-A4JF-01 10 101646372 101646372 C T DNMBP Silent p.R1101R 0.15 TCGA-86-A4JF-01 10 102053054 102053054 G A PKD2L1 Missense_Mutation p.S581F 0.17 deleterious(0.01) possibly_damaging(0.823) TCGA-86-A4JF-01 10 102763689 102763689 C T LZTS2 Silent p.S278S 0.34 TCGA-86-A4JF-01 10 102766534 102766534 C T LZTS2 Missense_Mutation p.P540L 0.20 tolerated(0.19) benign(0.005) TCGA-86-A4JF-01 10 102824324 102824324 G C KAZALD1 Missense_Mutation p.D247H 0.12 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 10 104247959 104247959 C T ACTR1A Missense_Mutation p.R88H 0.25 tolerated(0.1) benign(0.052) TCGA-86-A4JF-01 10 105903380 105903380 G A WDR96 Missense_Mutation p.T1321M 0.19 tolerated(0.39) benign(0.032) TCGA-86-A4JF-01 10 115481532 115481532 A - CASP7 Frame_Shift_Del p.A159Lfs*17 0.20 TCGA-86-A4JF-01 10 116605995 116605995 T C FAM160B1 Missense_Mutation p.S423P 0.23 deleterious(0.02) possibly_damaging(0.844) TCGA-86-A4JF-01 10 117856264 117856264 G A GFRA1 Missense_Mutation p.A261V 0.10 deleterious(0) possibly_damaging(0.794) TCGA-86-A4JF-01 10 119042898 119042898 T - PDZD8 Frame_Shift_Del p.I1116* 0.12 TCGA-86-A4JF-01 10 124390627 124390627 G A DMBT1 Missense_Mutation p.G1930E 0.08 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 10 124457494 124457495 - T C10orf120 Frame_Shift_Ins p.C255Mfs*8 0.19 TCGA-86-A4JF-01 10 126714833 126714833 G A CTBP2 Missense_Mutation p.A499V 0.10 tolerated_low_confidence(0.15) benign(0.025) TCGA-86-A4JF-01 10 12867771 12867771 G A CAMK1D Intron 0.18 TCGA-86-A4JF-01 10 134006240 134006240 C T DPYSL4 Silent p.G69G 0.18 TCGA-86-A4JF-01 10 135024969 135024969 C T KNDC1 Missense_Mutation p.R1318W 0.20 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 10 135082998 135082998 C T ADAM8 Silent p.A633A 0.26 TCGA-86-A4JF-01 10 15008446 15008446 T C MEIG1 5'UTR 0.09 TCGA-86-A4JF-01 10 15561289 15561289 C A ITGA8 Missense_Mutation p.K1035N 0.21 deleterious(0) probably_damaging(0.984) TCGA-86-A4JF-01 10 15639226 15639226 G A ITGA8 Missense_Mutation p.P731S 0.19 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 10 15655741 15655741 C T ITGA8 Missense_Mutation p.A491T 0.06 deleterious(0.02) benign(0.247) TCGA-86-A4JF-01 10 17107561 17107561 C T CUBN Missense_Mutation p.D1029N 0.17 tolerated(0.26) benign(0.003) TCGA-86-A4JF-01 10 17275658 17275658 T - VIM Frame_Shift_Del p.L234* 0.14 TCGA-86-A4JF-01 10 18834913 18834913 C A NSUN6 Missense_Mutation p.K453N 0.18 tolerated(0.17) benign(0.003) TCGA-86-A4JF-01 10 22830826 22830826 C G PIP4K2A Missense_Mutation p.D315H 0.27 deleterious(0) probably_damaging(0.928) TCGA-86-A4JF-01 10 23393147 23393147 G A MSRB2 Missense_Mutation p.V65I 0.18 tolerated(0.19) benign(0.4) TCGA-86-A4JF-01 10 25313553 25313553 G A THNSL1 Silent p.S467S 0.05 TCGA-86-A4JF-01 10 25887326 25887326 G A GPR158 Missense_Mutation p.G924D 0.10 tolerated(0.46) benign(0.028) TCGA-86-A4JF-01 10 30318220 30318220 C A KIAA1462 Missense_Mutation p.R286L 0.19 deleterious(0.01) probably_damaging(0.95) TCGA-86-A4JF-01 10 3158984 3158984 G T PFKP Missense_Mutation p.W463L 0.28 deleterious(0) probably_damaging(0.995) TCGA-86-A4JF-01 10 33136772 33136772 G A C10ORF68 Missense_Mutation p.E477K 0.09 deleterious(0.01) possibly_damaging(0.844) TCGA-86-A4JF-01 10 37508466 37508466 G A ANKRD30A Missense_Mutation p.E1220K 0.17 deleterious(0) possibly_damaging(0.636) TCGA-86-A4JF-01 10 43019176 43019176 G A ZNF37BP RNA 0.07 TCGA-86-A4JF-01 10 43609990 43609990 G A RET Missense_Mutation p.V648I 0.25 tolerated(0.61) benign(0.002) TCGA-86-A4JF-01 10 45799636 45799636 A C OR13A1 Missense_Mutation p.F79V 0.32 tolerated(0.11) benign(0.176) TCGA-86-A4JF-01 10 4879674 4879674 C T AKR1E2 Silent p.T161T 0.17 TCGA-86-A4JF-01 10 49381120 49381121 AA - FRMPD2 Frame_Shift_Del p.L1031Rfs*15 0.19 TCGA-86-A4JF-01 10 50863176 50863176 C T CHAT Missense_Mutation p.A557V 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-86-A4JF-01 10 54074434 54074434 C T DKK1 Silent p.Y80Y 0.06 TCGA-86-A4JF-01 10 55973701 55973701 T C PCDH15 Missense_Mutation p.I365V 0.18 tolerated(0.37) possibly_damaging(0.748) TCGA-86-A4JF-01 10 64425962 64425962 G T ZNF365 Missense_Mutation p.G432C 0.21 deleterious_low_confidence(0.01) probably_damaging(0.984) TCGA-86-A4JF-01 10 6539207 6539207 C T PRKCQ Silent p.L183L 0.06 TCGA-86-A4JF-01 10 70775878 70775878 G C KIAA1279 Silent p.L524L 0.25 TCGA-86-A4JF-01 10 71174888 71174888 C T TACR2 Missense_Mutation p.A134T 0.07 deleterious(0) probably_damaging(0.99) TCGA-86-A4JF-01 10 72468438 72468438 C T ADAMTS14 Silent p.S258S 0.22 TCGA-86-A4JF-01 10 7409851 7409851 C A SFMBT2 Missense_Mutation p.V66F 0.32 deleterious(0) probably_damaging(0.933) TCGA-86-A4JF-01 10 75037090 75037090 G C TTC18 Missense_Mutation p.L880V 0.10 tolerated(0.56) benign(0.025) TCGA-86-A4JF-01 10 89720683 89720683 C G PTEN Missense_Mutation p.F278L 0.11 deleterious(0) benign(0.232) TCGA-86-A4JF-01 10 90672978 90672978 G A STAMBPL1 Missense_Mutation p.E181K 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-86-A4JF-01 10 93389938 93389938 A G PPP1R3C Missense_Mutation p.F234L 0.25 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 10 94297256 94297256 T C IDE Missense_Mutation p.I50M 0.26 tolerated(0.2) benign(0.03) TCGA-86-A4JF-01 10 94836938 94836938 G T CYP26A1 Silent p.V457V 0.18 TCGA-86-A4JF-01 10 97607265 97607265 C T ENTPD1 Silent p.N304N 0.29 TCGA-86-A4JF-01 11 103055673 103055673 T C DYNC2H1 Silent p.L2176L 0.10 TCGA-86-A4JF-01 11 105009699 105009699 T A CARD18 Missense_Mutation p.E38D 0.23 deleterious(0.02) probably_damaging(0.992) TCGA-86-A4JF-01 11 106810472 106810472 T A GUCY1A2 Missense_Mutation p.Q307L 0.22 tolerated(0.34) benign(0) TCGA-86-A4JF-01 11 106810474 106810474 T G GUCY1A2 Silent p.P306P 0.21 TCGA-86-A4JF-01 11 108060038 108060038 A G NPAT Silent p.I117I 0.17 TCGA-86-A4JF-01 11 108114808 108114808 T - ATM Frame_Shift_Del p.L210Wfs*20 0.12 TCGA-86-A4JF-01 11 1081648 1081648 G T MUC2 Splice_Site p.X526_splice 0.24 TCGA-86-A4JF-01 11 110461475 110461475 G A ARHGAP20 Missense_Mutation p.S401L 0.14 deleterious(0) probably_damaging(0.987) TCGA-86-A4JF-01 11 113661279 113661279 C T ATF4P4 RNA 0.30 TCGA-86-A4JF-01 11 117064585 117064585 G T SIDT2 Missense_Mutation p.R743M 0.07 deleterious(0) possibly_damaging(0.882) TCGA-86-A4JF-01 11 119206045 119206045 C T RNF26 Silent p.A71A 0.17 TCGA-86-A4JF-01 11 120929158 120929158 C T TBCEL Nonsense_Mutation p.R273* 0.19 TCGA-86-A4JF-01 11 120996478 120996478 G A TECTA Silent p.V557V 0.09 TCGA-86-A4JF-01 11 12262608 12262608 G T MICAL2 Missense_Mutation p.G746C 0.06 tolerated(0.07) probably_damaging(0.968) TCGA-86-A4JF-01 11 123524576 123524576 A C SCN3B 5'UTR 0.10 TCGA-86-A4JF-01 11 123601268 123601268 C T ZNF202 Missense_Mutation p.R110Q 0.14 deleterious(0.05) probably_damaging(0.999) TCGA-86-A4JF-01 11 125255570 125255570 A G PKNOX2 Silent p.E117E 0.21 TCGA-86-A4JF-01 11 125483987 125483987 G A STT3A Silent p.A520A 0.21 TCGA-86-A4JF-01 11 1262578 1262578 C A MUC5B Missense_Mutation p.P1490T 0.23 unknown(0) TCGA-86-A4JF-01 11 1265560 1265560 G A MUC5B Missense_Mutation p.A2484T 0.14 unknown(0) TCGA-86-A4JF-01 11 128842743 128842743 G A ARHGAP32 Missense_Mutation p.R1206C 0.28 tolerated_low_confidence(0.06) benign(0.002) TCGA-86-A4JF-01 11 13380012 13380012 C T ARNTL Missense_Mutation p.R85W 0.11 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 11 13734522 13734522 C T FAR1 Silent p.N299N 0.08 TCGA-86-A4JF-01 11 17352572 17352572 A T NUCB2 Intron 0.24 TCGA-86-A4JF-01 11 17809919 17809919 A G SERGEF Missense_Mutation p.C364R 0.17 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 11 18425354 18425354 G T LDHA Nonsense_Mutation p.E265* 0.09 TCGA-86-A4JF-01 11 20139799 20139799 C T NAV2 Silent p.L2488L 0.09 TCGA-86-A4JF-01 11 2154211 2154211 T C IGF2 3'UTR 0.10 TCGA-86-A4JF-01 11 26529749 26529749 T C ANO3 Silent p.Y177Y 0.13 TCGA-86-A4JF-01 11 30032940 30032940 C - KCNA4 Frame_Shift_Del p.G429Vfs*53 0.18 TCGA-86-A4JF-01 11 34120944 34120944 A - CAPRIN1 3'UTR 0.23 TCGA-86-A4JF-01 11 35231559 35231559 G A CD44 Missense_Mutation p.E522K 0.04 deleterious(0) probably_damaging(0.987) TCGA-86-A4JF-01 11 36248960 36248960 C T LDLRAD3 Silent p.S260S 0.32 TCGA-86-A4JF-01 11 45671174 45671174 A - CHST1 3'UTR 0.14 TCGA-86-A4JF-01 11 4615649 4615649 T C OR52I1 Silent p.Y127Y 0.05 TCGA-86-A4JF-01 11 46563725 46563725 G A AMBRA1 Silent p.S524S 0.11 TCGA-86-A4JF-01 11 4661476 4661476 T C OR51D1 Silent p.C152C 0.14 TCGA-86-A4JF-01 11 4824717 4824717 T C OR52R1 Silent p.R298R 0.18 TCGA-86-A4JF-01 11 49168272 49168272 C A FOLH1 3'UTR 0.20 TCGA-86-A4JF-01 11 49178307 49178307 C A FOLH1 Nonsense_Mutation p.G529* 0.11 TCGA-86-A4JF-01 11 4967713 4967713 G C OR51A4 Silent p.L206L 0.19 TCGA-86-A4JF-01 11 5247913 5247913 C A HBB Missense_Mutation p.G70V 0.13 tolerated(0.26) benign(0.015) TCGA-86-A4JF-01 11 5247950 5247950 T A HBB Missense_Mutation p.N58Y 0.12 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 11 5411543 5411543 C T OR51M1 Silent p.S305S 0.25 TCGA-86-A4JF-01 11 552668 552668 C A LRRC56 Silent p.P427P 0.16 TCGA-86-A4JF-01 11 55541587 55541587 C T OR5D13 Missense_Mutation p.T225I 0.06 tolerated(0.6) benign(0) TCGA-86-A4JF-01 11 55761680 55761680 T C OR5F1 Missense_Mutation p.Y141C 0.11 tolerated(1) benign(0) TCGA-86-A4JF-01 11 56043410 56043410 C A OR5T1 Missense_Mutation p.A99E 0.14 tolerated(0.09) benign(0.006) TCGA-86-A4JF-01 11 56058392 56058392 G C OR8H1 Missense_Mutation p.I49M 0.10 deleterious(0.01) possibly_damaging(0.476) TCGA-86-A4JF-01 11 56310655 56310655 G A OR5M11 Missense_Mutation p.L27F 0.08 tolerated(0.24) benign(0.106) TCGA-86-A4JF-01 11 56949880 56949880 G A LRRC55 Silent p.V171V 0.35 TCGA-86-A4JF-01 11 5776645 5776645 G T OR52N4 Silent p.R225R 0.14 TCGA-86-A4JF-01 11 57982359 57982359 A T OR1S1 Missense_Mutation p.Y48F 0.17 deleterious(0.02) possibly_damaging(0.877) TCGA-86-A4JF-01 11 58189906 58189906 C A OR5B2 Missense_Mutation p.A277S 0.10 tolerated_low_confidence(0.07) benign(0.01) TCGA-86-A4JF-01 11 5841995 5841995 G C OR52N2 Missense_Mutation p.A144P 0.12 deleterious(0) probably_damaging(0.918) TCGA-86-A4JF-01 11 59574080 59574080 G A MRPL16 Missense_Mutation p.R166C 0.23 tolerated(0.07) probably_damaging(0.947) TCGA-86-A4JF-01 11 59837059 59837059 C T MS4A3 Silent p.L176L 0.07 TCGA-86-A4JF-01 11 60274208 60274208 G C MS4A12 Missense_Mutation p.G199A 0.09 deleterious(0.01) probably_damaging(0.992) TCGA-86-A4JF-01 11 61533159 61533159 A C MYRF Missense_Mutation p.I37L 0.19 tolerated(0.07) probably_damaging(0.992) TCGA-86-A4JF-01 11 61897668 61897668 G A INCENP Silent p.S223S 0.10 TCGA-86-A4JF-01 11 62010909 62010909 G C SCGB1D2 Missense_Mutation p.Q68H 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-86-A4JF-01 11 62300790 62300790 C G AHNAK Missense_Mutation p.E367Q 0.11 possibly_damaging(0.674) TCGA-86-A4JF-01 11 6231614 6231614 C T C11orf42 Nonsense_Mutation p.Q203* 0.06 TCGA-86-A4JF-01 11 62346349 62346349 A - TUT1 Frame_Shift_Del p.S320Pfs*31 0.11 TCGA-86-A4JF-01 11 62444189 62444189 T C UBXN1 3'UTR 0.10 TCGA-86-A4JF-01 11 62457780 62457780 A G BSCL2 3'UTR 0.08 TCGA-86-A4JF-01 11 62751968 62751968 G A SLC22A6 Silent p.V65V 0.22 TCGA-86-A4JF-01 11 64009911 64009911 G A FKBP2 Missense_Mutation p.A18T 0.22 tolerated(0.42) benign(0.001) TCGA-86-A4JF-01 11 64338640 64338640 G A SLC22A11 3'UTR 0.11 TCGA-86-A4JF-01 11 64532796 64532796 A - SF1 3'UTR 0.10 TCGA-86-A4JF-01 11 64645664 64645664 C T EHD1 Silent p.E91E 0.12 TCGA-86-A4JF-01 11 65113491 65113491 C T DPF2 Missense_Mutation p.P289L 0.06 deleterious(0.04) possibly_damaging(0.646) TCGA-86-A4JF-01 11 65113781 65113781 A C DPF2 Missense_Mutation p.Q323P 0.13 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 11 65123347 65123347 T G TIGD3 Missense_Mutation p.L23R 0.12 deleterious(0) possibly_damaging(0.894) TCGA-86-A4JF-01 11 65123449 65123449 C T TIGD3 Missense_Mutation p.A57V 0.12 deleterious(0.01) probably_damaging(0.958) TCGA-86-A4JF-01 11 6592204 6592204 G A DNHD1 Missense_Mutation p.E4488K 0.06 probably_damaging(1) TCGA-86-A4JF-01 11 66407040 66407040 T C RBM4 5'UTR 0.31 TCGA-86-A4JF-01 11 66461659 66461659 T C SPTBN2 Missense_Mutation p.Q1485R 0.09 tolerated(0.41) benign(0.209) TCGA-86-A4JF-01 11 68475930 68475930 G T MTL5 Missense_Mutation p.A458D 0.09 deleterious(0.01) probably_damaging(0.92) TCGA-86-A4JF-01 11 68478347 68478347 G A MTL5 Silent p.H443H 0.14 TCGA-86-A4JF-01 11 6898606 6898606 C T OR10A4 Missense_Mutation p.S243F 0.08 deleterious(0.03) possibly_damaging(0.521) TCGA-86-A4JF-01 11 69625400 69625400 G T FGF3 Silent p.S131S 0.08 TCGA-86-A4JF-01 11 70333260 70333260 C G SHANK2 Missense_Mutation p.K1047N 0.11 deleterious(0.01) benign(0.04) TCGA-86-A4JF-01 11 71847078 71847078 C T FOLR3 Missense_Mutation p.A27V 0.18 tolerated(0.33) benign(0) TCGA-86-A4JF-01 11 71944716 71944716 G A INPPL1 Missense_Mutation p.V714I 0.15 tolerated(0.09) benign(0.336) TCGA-86-A4JF-01 11 72295736 72295736 C T PDE2A Missense_Mutation p.A466T 0.11 tolerated(0.1) probably_damaging(0.958) TCGA-86-A4JF-01 11 73021145 73021145 C T ARHGEF17 Nonsense_Mutation p.R488* 0.23 TCGA-86-A4JF-01 11 76256841 76256841 G A C11orf30 Missense_Mutation p.V1092M 0.12 tolerated_low_confidence(0.1) probably_damaging(0.969) TCGA-86-A4JF-01 11 76256913 76256913 G A C11orf30 Missense_Mutation p.V1116I 0.15 tolerated_low_confidence(0.14) possibly_damaging(0.785) TCGA-86-A4JF-01 11 8123115 8123115 G A TUB Silent p.Q545Q 0.23 TCGA-86-A4JF-01 11 82705146 82705146 G C RAB30 Missense_Mutation p.Q38E 0.09 deleterious(0.01) probably_damaging(0.971) TCGA-86-A4JF-01 11 838174 838174 C G CD151 Silent p.L248L 0.06 TCGA-86-A4JF-01 11 85435182 85435182 G A SYTL2 Missense_Mutation p.S773L 0.21 deleterious(0.02) benign(0.004) TCGA-86-A4JF-01 11 8959621 8959623 AGA - ASCL3 In_Frame_Del p.F29del 0.13 TCGA-86-A4JF-01 11 92534502 92534502 A C FAT3 Missense_Mutation p.T2775P 0.20 benign(0.048) TCGA-86-A4JF-01 11 92534952 92534952 G A FAT3 Missense_Mutation p.A2925T 0.16 benign(0.004) TCGA-86-A4JF-01 11 92543142 92543142 C - FAT3 Frame_Shift_Del p.P3129Lfs*22 0.12 TCGA-86-A4JF-01 11 94924580 94924580 A G SESN3 Silent p.Y110Y 0.09 TCGA-86-A4JF-01 11 977178 977178 G T AP2A2 Missense_Mutation p.G186V 0.22 deleterious(0.04) benign(0.123) TCGA-86-A4JF-01 12 100166777 100166777 T C ANKS1B Missense_Mutation p.T351A 0.15 tolerated(1) benign(0.026) TCGA-86-A4JF-01 12 102158576 102158576 C T GNPTAB Missense_Mutation p.A707T 0.25 tolerated(0.05) benign(0.013) TCGA-86-A4JF-01 12 104397070 104397070 T A GLT8D2 Missense_Mutation p.T43S 0.14 tolerated(0.77) benign(0) TCGA-86-A4JF-01 12 10587093 10587093 G A KLRC2 Missense_Mutation p.T108M 0.10 deleterious(0.03) benign(0.375) TCGA-86-A4JF-01 12 109577466 109577466 G T ACACB Missense_Mutation p.G86C 0.21 tolerated_low_confidence(0.24) benign(0) TCGA-86-A4JF-01 12 111290746 111290746 C T CCDC63 5'UTR 0.19 TCGA-86-A4JF-01 12 112506753 112506753 G A NAA25 Silent p.G360G 0.23 TCGA-86-A4JF-01 12 112676903 112676903 G A HECTD4 Missense_Mutation p.A1602V 0.12 benign(0.203) TCGA-86-A4JF-01 12 116424069 116424069 A T MED13L Splice_Site p.X1446_splice 0.17 TCGA-86-A4JF-01 12 118199092 118199092 G A KSR2 Missense_Mutation p.P237L 0.17 tolerated(0.2) benign(0) TCGA-86-A4JF-01 12 118504234 118504234 T C VSIG10 3'UTR 0.33 TCGA-86-A4JF-01 12 120530904 120530904 G A CCDC64 Missense_Mutation p.R554Q 0.17 tolerated(0.21) benign(0.021) TCGA-86-A4JF-01 12 120954577 120954577 G A COQ5 Missense_Mutation p.R123W 0.18 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 12 121154761 121154761 G T UNC119B Missense_Mutation p.D187Y 0.18 deleterious(0.01) probably_damaging(1) TCGA-86-A4JF-01 12 121747584 121747584 T C ANAPC5 Missense_Mutation p.D659G 0.05 deleterious(0.01) possibly_damaging(0.831) TCGA-86-A4JF-01 12 121768517 121768517 T A ANAPC5 Intron 0.11 TCGA-86-A4JF-01 12 121784752 121784752 A G ANAPC5 Missense_Mutation p.L115P 0.40 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 12 123424727 123424727 C T ABCB9 Silent p.L558L 0.15 TCGA-86-A4JF-01 12 124420007 124420007 C T DNAH10 Silent p.C4465C 0.20 TCGA-86-A4JF-01 12 124856604 124856604 T C NCOR2 Missense_Mutation p.D924G 0.15 probably_damaging(0.999) TCGA-86-A4JF-01 12 125461949 125461949 C G DHX37 Missense_Mutation p.E276Q 0.10 deleterious(0.02) probably_damaging(0.919) TCGA-86-A4JF-01 12 125900162 125900162 G T TMEM132B Missense_Mutation p.G344C 0.19 deleterious(0.01) possibly_damaging(0.698) TCGA-86-A4JF-01 12 12870831 12870831 C T CDKN1B Nonsense_Mutation p.Q20* 0.23 TCGA-86-A4JF-01 12 130184763 130184763 C T TMEM132D Missense_Mutation p.G187E 0.19 deleterious(0.01) probably_damaging(0.99) TCGA-86-A4JF-01 12 130647695 130647695 G A FZD10 Missense_Mutation p.E70K 0.09 deleterious(0.03) probably_damaging(0.995) TCGA-86-A4JF-01 12 131476886 131476886 C T GPR133 Silent p.L305L 0.17 TCGA-86-A4JF-01 12 132512742 132512742 G A EP400 Missense_Mutation p.A1764T 0.21 unknown(0) TCGA-86-A4JF-01 12 1345970 1345970 T C ERC1 Missense_Mutation p.L796P 0.29 deleterious(0.03) probably_damaging(0.956) TCGA-86-A4JF-01 12 14576874 14576874 A - ATF7IP Frame_Shift_Del p.V11Sfs*8 0.10 TCGA-86-A4JF-01 12 14778829 14778829 T - GUCY2C Frame_Shift_Del p.N757Mfs*8 0.21 TCGA-86-A4JF-01 12 15710451 15710451 A T PTPRO Missense_Mutation p.Y874F 0.28 tolerated(0.11) probably_damaging(0.958) TCGA-86-A4JF-01 12 18800985 18800985 T A PIK3C2G 3'UTR 0.13 TCGA-86-A4JF-01 12 19496296 19496296 G C PLEKHA5 Missense_Mutation p.E864Q 0.23 deleterious(0) possibly_damaging(0.833) TCGA-86-A4JF-01 12 2064700 2064701 - T DCP1B Frame_Shift_Ins p.I184Dfs*9 0.16 TCGA-86-A4JF-01 12 21175839 21175839 G A SLCO1B7 Missense_Mutation p.M132I 0.07 tolerated(0.08) benign(0.002) TCGA-86-A4JF-01 12 21623098 21623098 C T PYROXD1 3'UTR 0.17 TCGA-86-A4JF-01 12 22065947 22065947 G - ABCC9 Frame_Shift_Del p.Y290* 0.13 TCGA-86-A4JF-01 12 22354385 22354385 G A ST8SIA1 3'UTR 0.23 TCGA-86-A4JF-01 12 23757371 23757371 T A SOX5 Missense_Mutation p.T372S 0.24 tolerated(0.65) benign(0.007) TCGA-86-A4JF-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.19 deleterious(0) possibly_damaging(0.479) TCGA-86-A4JF-01 12 26551833 26551833 G A ITPR2 Silent p.L2558L 0.14 TCGA-86-A4JF-01 12 26647141 26647142 - A ITPR2 Frame_Shift_Ins p.S1772Ffs*12 0.08 TCGA-86-A4JF-01 12 27126801 27126801 A G TM7SF3 3'UTR 0.21 TCGA-86-A4JF-01 12 27573439 27573439 T C ARNTL2 Missense_Mutation p.F629L 0.20 tolerated(0.12) benign(0.011) TCGA-86-A4JF-01 12 29617581 29617581 C A OVCH1 Missense_Mutation p.D662Y 0.14 deleterious(0) possibly_damaging(0.832) TCGA-86-A4JF-01 12 29689150 29689150 C G TMTC1 Missense_Mutation p.A593P 0.13 deleterious(0.03) probably_damaging(0.995) TCGA-86-A4JF-01 12 2997084 2997084 C T RHNO1 Missense_Mutation p.P59L 0.17 deleterious(0) probably_damaging(0.978) TCGA-86-A4JF-01 12 30802165 30802165 A G IPO8 Missense_Mutation p.V725A 0.14 deleterious(0) benign(0.441) TCGA-86-A4JF-01 12 32134433 32134433 G T KIAA1551 Nonsense_Mutation p.G182* 0.12 TCGA-86-A4JF-01 12 32134547 32134547 T C KIAA1551 Missense_Mutation p.Y220H 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-86-A4JF-01 12 32866201 32866201 G A DNM1L Missense_Mutation p.R172Q 0.19 tolerated(0.19) benign(0.003) TCGA-86-A4JF-01 12 32906891 32906891 T C YARS2 Missense_Mutation p.Y303C 0.17 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 12 32949103 32949103 G A PKP2 Missense_Mutation p.A810V 0.11 tolerated(0.2) benign(0.164) TCGA-86-A4JF-01 12 32977005 32977005 T C PKP2 Missense_Mutation p.I594V 0.10 tolerated(0.11) possibly_damaging(0.542) TCGA-86-A4JF-01 12 34178900 34178900 T - ALG10 Frame_Shift_Del p.F159Lfs*7 0.17 TCGA-86-A4JF-01 12 3678689 3678689 T C PRMT8 Missense_Mutation p.V224A 0.19 tolerated(1) benign(0.016) TCGA-86-A4JF-01 12 39726893 39726893 C G KIF21A Missense_Mutation p.R835P 0.16 deleterious(0) probably_damaging(0.988) TCGA-86-A4JF-01 12 39726894 39726894 G A KIF21A Missense_Mutation p.R835W 0.16 deleterious(0) probably_damaging(0.997) TCGA-86-A4JF-01 12 40076717 40076717 T C C12orf40 Missense_Mutation p.C331R 0.31 tolerated(0.19) possibly_damaging(0.754) TCGA-86-A4JF-01 12 42787470 42787470 G A PPHLN1 Silent p.L249L 0.16 TCGA-86-A4JF-01 12 4383349 4383351 AGA - CCND2 In_Frame_Del p.K49del 0.09 TCGA-86-A4JF-01 12 46320012 46320012 C T SCAF11 Missense_Mutation p.V1158I 0.07 deleterious(0) probably_damaging(0.997) TCGA-86-A4JF-01 12 49396733 49396733 C A PRKAG1 Silent p.L324L 0.14 TCGA-86-A4JF-01 12 49431869 49431869 C A KMT2D Missense_Mutation p.E3090D 0.11 possibly_damaging(0.708) TCGA-86-A4JF-01 12 49521764 49521764 C G TUBA1B Missense_Mutation p.E445Q 0.16 deleterious_low_confidence(0.04) unknown(0) TCGA-86-A4JF-01 12 49579179 49579179 C T TUBA1A Missense_Mutation p.V324I 0.20 tolerated_low_confidence(0.07) possibly_damaging(0.591) TCGA-86-A4JF-01 12 49725509 49725509 A G TROAP 3'UTR 0.21 TCGA-86-A4JF-01 12 49948320 49948320 G - KCNH3 Frame_Shift_Del p.G708Efs*11 0.15 TCGA-86-A4JF-01 12 49951667 49951667 G T KCNH3 Missense_Mutation p.E1061D 0.10 deleterious_low_confidence(0) benign(0.072) TCGA-86-A4JF-01 12 51883582 51883582 G T SLC4A8 Missense_Mutation p.L849F 0.16 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 12 52822150 52822151 - T KRT75 Frame_Shift_Ins p.Q425Afs*9 0.22 TCGA-86-A4JF-01 12 52992695 52992695 C T KRT72 Missense_Mutation p.D210N 0.16 deleterious(0) possibly_damaging(0.87) TCGA-86-A4JF-01 12 53517521 53517521 A G SOAT2 Missense_Mutation p.N461S 0.17 deleterious(0.01) possibly_damaging(0.856) TCGA-86-A4JF-01 12 53687196 53687196 C T ESPL1 Nonsense_Mutation p.R2101* 0.15 TCGA-86-A4JF-01 12 53900041 53900041 C G TARBP2 3'UTR 0.30 TCGA-86-A4JF-01 12 54394243 54394243 C T HOXC9 Missense_Mutation p.R91C 0.11 deleterious(0) probably_damaging(0.996) TCGA-86-A4JF-01 12 54447721 54447721 G T HOXC4 Silent p.S5S 0.16 TCGA-86-A4JF-01 12 54686509 54686509 G A NFE2 Silent p.Y257Y 0.23 TCGA-86-A4JF-01 12 54757554 54757554 C - GPR84 Frame_Shift_Del p.V28Wfs*5 0.12 TCGA-86-A4JF-01 12 55356806 55356806 C A TESPA1 Silent p.L292L 0.19 TCGA-86-A4JF-01 12 56435939 56435939 C T RPS26 5'UTR 0.23 TCGA-86-A4JF-01 12 57389350 57389350 G C GPR182 Missense_Mutation p.W119C 0.14 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 12 57501400 57501400 G A STAT6 Silent p.I81I 0.15 TCGA-86-A4JF-01 12 57920109 57920109 C A MBD6 Missense_Mutation p.P453H 0.21 deleterious_low_confidence(0.01) unknown(0) TCGA-86-A4JF-01 12 58144537 58144537 G C CDK4 Silent p.L178L 0.08 TCGA-86-A4JF-01 12 662963 662963 T C B4GALNT3 Missense_Mutation p.V625A 0.05 tolerated(0.67) benign(0.003) TCGA-86-A4JF-01 12 6838547 6838547 T C COPS7A Silent p.V154V 0.19 TCGA-86-A4JF-01 12 6883896 6883896 C - LAG3 Frame_Shift_Del p.H218Ifs*4 0.13 TCGA-86-A4JF-01 12 69140321 69140321 G T SLC35E3 Missense_Mutation p.W55L 0.20 tolerated(0.37) benign(0.002) TCGA-86-A4JF-01 12 70732532 70732532 G C CNOT2 Missense_Mutation p.D370H 0.12 deleterious(0) possibly_damaging(0.868) TCGA-86-A4JF-01 12 7173260 7173260 G A C1S Missense_Mutation p.R286H 0.25 tolerated(0.05) benign(0.329) TCGA-86-A4JF-01 12 75601361 75601361 C T KCNC2 Missense_Mutation p.E135K 0.12 deleterious(0) possibly_damaging(0.884) TCGA-86-A4JF-01 12 7586146 7586146 C A CD163L1 Missense_Mutation p.G90V 0.13 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 12 77419463 77419463 G A E2F7 Missense_Mutation p.P814S 0.20 tolerated(0.07) benign(0.027) TCGA-86-A4JF-01 12 78522602 78522602 C A NAV3 Missense_Mutation p.A1466D 0.17 deleterious(0.01) possibly_damaging(0.826) TCGA-86-A4JF-01 12 7966784 7966784 C T SLC2A14 3'UTR 0.18 TCGA-86-A4JF-01 12 80704477 80704477 C A OTOGL Nonsense_Mutation p.Y1131* 0.12 TCGA-86-A4JF-01 12 80707256 80707256 A T OTOGL Missense_Mutation p.I1142F 0.14 deleterious(0) probably_damaging(0.993) TCGA-86-A4JF-01 12 81648698 81648698 A T ACSS3 Silent p.A686A 0.28 TCGA-86-A4JF-01 12 81719564 81719564 T C PPFIA2 Silent p.L878L 0.14 TCGA-86-A4JF-01 12 85517926 85517926 A G LRRIQ1 Silent p.R1212R 0.05 TCGA-86-A4JF-01 12 89853465 89853465 G A POC1B Nonsense_Mutation p.Q355* 0.13 TCGA-86-A4JF-01 12 9009912 9009912 C T A2ML1 Missense_Mutation p.R1001W 0.18 deleterious(0) possibly_damaging(0.776) TCGA-86-A4JF-01 12 91347782 91347782 C T CCER1 Silent p.L246L 0.19 TCGA-86-A4JF-01 12 91347840 91347840 G T CCER1 Missense_Mutation p.P227Q 0.18 tolerated(0.1) probably_damaging(0.972) TCGA-86-A4JF-01 12 91348110 91348110 G - CCER1 Frame_Shift_Del p.P137Qfs*30 0.12 TCGA-86-A4JF-01 12 93968690 93968690 G A SOCS2 Missense_Mutation p.C111Y 0.12 deleterious(0.02) probably_damaging(0.923) TCGA-86-A4JF-01 12 94965348 94965348 C T TMCC3 Missense_Mutation p.A433T 0.07 deleterious(0.02) benign(0.144) TCGA-86-A4JF-01 12 95228583 95228583 G A MIR492 3'Flank 0.20 TCGA-86-A4JF-01 12 95445590 95445590 C T NR2C1 Missense_Mutation p.D305N 0.09 tolerated(0.05) benign(0.11) TCGA-86-A4JF-01 12 96354204 96354204 G A AMDHD1 Missense_Mutation p.D206N 0.31 tolerated(0.2) benign(0.079) TCGA-86-A4JF-01 12 97137903 97137903 G A C12orf55 Missense_Mutation p.A2555T 0.27 deleterious(0) benign(0.188) TCGA-86-A4JF-01 12 978154 978154 C G WNK1 Intron 0.07 TCGA-86-A4JF-01 13 102051459 102051459 T A NALCN Missense_Mutation p.S7C 0.33 deleterious(0) probably_damaging(0.984) TCGA-86-A4JF-01 13 102051466 102051466 C A NALCN Missense_Mutation p.R4S 0.33 deleterious(0) probably_damaging(0.96) TCGA-86-A4JF-01 13 110818643 110818643 T - COL4A1 Frame_Shift_Del p.G1320Vfs*51 0.14 TCGA-86-A4JF-01 13 111090965 111090965 G A COL4A2 Missense_Mutation p.G288S 0.06 probably_damaging(0.996) TCGA-86-A4JF-01 13 111156284 111156284 G A COL4A2 Missense_Mutation p.R1410Q 0.08 possibly_damaging(0.553) TCGA-86-A4JF-01 13 111290951 111290951 G A CARKD 3'UTR 0.21 TCGA-86-A4JF-01 13 20049725 20049725 G T TPTE2 Missense_Mutation p.S73Y 0.10 deleterious(0) probably_damaging(0.98) TCGA-86-A4JF-01 13 21562246 21562246 C T LATS2 Missense_Mutation p.R558H 0.18 tolerated(0.26) benign(0) TCGA-86-A4JF-01 13 29600529 29600529 C T MTUS2 Missense_Mutation p.A575V 0.16 tolerated(0.33) benign(0.008) TCGA-86-A4JF-01 13 32735328 32735328 C T FRY Missense_Mutation p.A611V 0.12 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 13 32915277 32915277 T C BRCA2 Missense_Mutation p.M2262T 0.09 tolerated(0.99) benign(0.004) TCGA-86-A4JF-01 13 32954225 32954225 C T BRCA2 Missense_Mutation p.P3067S 0.07 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 13 33635705 33635705 T A KL Missense_Mutation p.V830E 0.23 deleterious(0) probably_damaging(0.95) TCGA-86-A4JF-01 13 36909299 36909299 C G SPG20 Missense_Mutation p.L223F 0.09 tolerated(0.34) benign(0.042) TCGA-86-A4JF-01 13 38266409 38266409 A G TRPC4 Missense_Mutation p.W321R 0.12 deleterious(0) probably_damaging(0.994) TCGA-86-A4JF-01 13 39605735 39605735 C A PROSER1 Nonsense_Mutation p.E49* 0.21 TCGA-86-A4JF-01 13 42882668 42882668 C T AKAP11 Silent p.S1732S 0.07 TCGA-86-A4JF-01 13 46585619 46585619 T C ZC3H13 Missense_Mutation p.I173M 0.08 unknown(0) TCGA-86-A4JF-01 13 49933935 49933937 TGT - CAB39L In_Frame_Del p.N103del 0.21 TCGA-86-A4JF-01 13 50065970 50065970 A - SETDB2 Frame_Shift_Del p.I718Yfs*11 0.18 TCGA-86-A4JF-01 13 52351196 52351196 C T DHRS12 Silent p.V170V 0.09 TCGA-86-A4JF-01 13 61985392 61985392 T A PCDH20 Missense_Mutation p.D947V 0.19 deleterious_low_confidence(0.01) benign(0.006) TCGA-86-A4JF-01 13 72014784 72014784 G C DACH1 3'UTR 0.06 TCGA-86-A4JF-01 13 79191205 79191205 G A RNF219 Missense_Mutation p.R231C 0.24 deleterious(0) probably_damaging(0.987) TCGA-86-A4JF-01 13 84455184 84455187 CAAG TAT SLITRK1 Frame_Shift_Del p.D152Efs*2 0.13 TCGA-86-A4JF-01 13 95899297 95899299 AAG - ABCC4 In_Frame_Del p.S79del 0.17 TCGA-86-A4JF-01 13 99090069 99090069 G A FARP1 Intron 0.24 TCGA-86-A4JF-01 14 100613146 100613146 G C DEGS2 Silent p.P308P 0.13 TCGA-86-A4JF-01 14 103969274 103969274 C T MARK3 Silent p.L658L 0.19 TCGA-86-A4JF-01 14 104493157 104493157 C T TDRD9 Missense_Mutation p.H1055Y 0.16 tolerated(0.07) benign(0.188) TCGA-86-A4JF-01 14 105174185 105174185 C - INF2 Frame_Shift_Del p.V530Wfs*28 0.11 TCGA-86-A4JF-01 14 105353864 105353864 C T CEP170B Silent p.S1096S 0.11 TCGA-86-A4JF-01 14 105409020 105409020 G T AHNAK2 Silent p.V4256V 0.17 TCGA-86-A4JF-01 14 105716710 105716710 G A BTBD6 Missense_Mutation p.V387M 0.21 deleterious(0) probably_damaging(0.973) TCGA-86-A4JF-01 14 106236643 106236643 G A IGHG3 Silent p.C141C 0.14 TCGA-86-A4JF-01 14 106621953 106621953 G T IGHV3-16 Missense_Mutation p.L98M 0.14 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-86-A4JF-01 14 106805478 106805478 C T IGHV4-31 Missense_Mutation p.G29R 0.14 deleterious_low_confidence(0.01) benign(0.316) TCGA-86-A4JF-01 14 20444329 20444329 G A OR4K15 Missense_Mutation p.V218I 0.20 tolerated(0.7) benign(0.013) TCGA-86-A4JF-01 14 20767468 20767468 C T TTC5 Missense_Mutation p.G179D 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-86-A4JF-01 14 21462766 21462766 A G METTL17 Silent p.S254S 0.10 TCGA-86-A4JF-01 14 21486368 21486368 T G NDRG2 Missense_Mutation p.T298P 0.14 deleterious(0.04) probably_damaging(0.952) TCGA-86-A4JF-01 14 21559653 21559653 C - ZNF219 Frame_Shift_Del p.G494Afs*254 0.20 TCGA-86-A4JF-01 14 22616471 22616471 G T TRAV27 Missense_Mutation p.G71V 0.21 deleterious(0) probably_damaging(0.968) TCGA-86-A4JF-01 14 23374088 23374088 C T RBM23 Missense_Mutation p.G287D 0.04 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 14 23517600 23517600 G A CDH24 Silent p.I683I 0.22 TCGA-86-A4JF-01 14 23518334 23518334 C T CDH24 Missense_Mutation p.G621D 0.25 deleterious(0.02) probably_damaging(1) TCGA-86-A4JF-01 14 23532191 23532191 C A ACIN1 Missense_Mutation p.V1002L 0.18 benign(0.035) TCGA-86-A4JF-01 14 23532192 23532192 C A ACIN1 Missense_Mutation p.Q1001H 0.18 possibly_damaging(0.62) TCGA-86-A4JF-01 14 23596496 23596496 G A SLC7A8 Missense_Mutation p.R500W 0.13 deleterious(0.03) benign(0.167) TCGA-86-A4JF-01 14 23826585 23826585 G A EFS Silent p.G512G 0.21 TCGA-86-A4JF-01 14 23858877 23858877 G T MYH6 Missense_Mutation p.R1262S 0.22 deleterious(0.02) probably_damaging(0.922) TCGA-86-A4JF-01 14 23896941 23896941 G T MYH7 Missense_Mutation p.H581N 0.16 deleterious(0) probably_damaging(0.99) TCGA-86-A4JF-01 14 24798678 24798678 C T ADCY4 Missense_Mutation p.A427T 0.22 deleterious(0.02) benign(0.007) TCGA-86-A4JF-01 14 24799137 24799137 C T ADCY4 Silent p.Q382Q 0.17 TCGA-86-A4JF-01 14 24878810 24878811 - A NYNRIN Frame_Shift_Ins p.T606Nfs*97 0.23 TCGA-86-A4JF-01 14 24975309 24975309 G A CMA1 Silent p.C175C 0.11 TCGA-86-A4JF-01 14 36982403 36982403 T C SFTA3 5'UTR 0.16 TCGA-86-A4JF-01 14 37198738 37198738 C A SLC25A21 Nonsense_Mutation p.G102* 0.17 TCGA-86-A4JF-01 14 44973866 44973866 C T FSCB Silent p.S775S 0.11 TCGA-86-A4JF-01 14 45523678 45523678 A G FAM179B Silent p.R1442R 0.19 TCGA-86-A4JF-01 14 50585440 50585440 T C SOS2 Silent p.P1207P 0.19 TCGA-86-A4JF-01 14 50667677 50667677 C A SOS2 Silent p.S113S 0.22 TCGA-86-A4JF-01 14 50789458 50789458 C G ATP5S Intron 0.23 TCGA-86-A4JF-01 14 51223676 51223676 C T NIN Missense_Mutation p.E1358K 0.12 tolerated(1) benign(0.002) TCGA-86-A4JF-01 14 55004470 55004470 G A CGRRF1 Missense_Mutation p.D201N 0.16 deleterious(0) probably_damaging(0.997) TCGA-86-A4JF-01 14 58937419 58937419 C T KIAA0586 Missense_Mutation p.P897L 0.30 deleterious(0.02) possibly_damaging(0.888) TCGA-86-A4JF-01 14 59930553 59930554 - T GPR135 Frame_Shift_Ins p.N464Kfs*23 0.21 TCGA-86-A4JF-01 14 60193683 60193683 T C RTN1 Silent p.L573L 0.18 TCGA-86-A4JF-01 14 63747784 63747784 C T RHOJ Silent p.V111V 0.10 TCGA-86-A4JF-01 14 65008732 65008732 G A HSPA2 Missense_Mutation p.E389K 0.06 deleterious_low_confidence(0.04) benign(0.245) TCGA-86-A4JF-01 14 68114830 68114830 A C ARG2 Silent p.T263T 0.12 TCGA-86-A4JF-01 14 70515592 70515592 T C SLC8A3 Missense_Mutation p.M767V 0.08 tolerated(0.94) benign(0.001) TCGA-86-A4JF-01 14 72054698 72054698 C T SIPA1L1 Missense_Mutation p.R37W 0.18 deleterious(0) probably_damaging(0.993) TCGA-86-A4JF-01 14 73743742 73743742 G A NUMB Silent p.A500A 0.16 TCGA-86-A4JF-01 14 74824105 74824105 C T VRTN Missense_Mutation p.R207W 0.24 deleterious(0) possibly_damaging(0.908) TCGA-86-A4JF-01 14 74825069 74825069 G A VRTN Missense_Mutation p.R528H 0.10 deleterious(0.01) probably_damaging(0.95) TCGA-86-A4JF-01 14 75746469 75746469 T C FOS Intron 0.16 TCGA-86-A4JF-01 14 77951111 77951111 C A ISM2 Missense_Mutation p.R98M 0.16 tolerated_low_confidence(0.09) benign(0.035) TCGA-86-A4JF-01 14 81969103 81969103 C T SEL1L Missense_Mutation p.E247K 0.07 tolerated(0.1) benign(0.013) TCGA-86-A4JF-01 14 88737230 88737230 A T KCNK10 Intron 0.18 TCGA-86-A4JF-01 14 91700787 91700787 G A GPR68 Missense_Mutation p.A203V 0.16 tolerated(0.34) benign(0.002) TCGA-86-A4JF-01 14 92471200 92471200 T C TRIP11 Missense_Mutation p.I1040M 0.11 deleterious(0.04) possibly_damaging(0.617) TCGA-86-A4JF-01 14 92909117 92909117 A G SLC24A4 Missense_Mutation p.N180S 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-86-A4JF-01 14 93171050 93171050 G A LGMN Silent p.Y398Y 0.17 TCGA-86-A4JF-01 14 94405652 94405652 C T ASB2 Silent p.T473T 0.12 TCGA-86-A4JF-01 14 94718090 94718090 G T PPP4R4 Missense_Mutation p.L574F 0.11 tolerated(0.15) possibly_damaging(0.58) TCGA-86-A4JF-01 14 94750307 94750307 G T SERPINA10 Missense_Mutation p.L444I 0.10 deleterious(0.01) probably_damaging(0.988) TCGA-86-A4JF-01 14 94935973 94935973 A T SERPINA9 Missense_Mutation p.F87I 0.17 deleterious(0.02) benign(0.023) TCGA-86-A4JF-01 14 95056413 95056413 C A SERPINA5 Missense_Mutation p.Q219K 0.18 tolerated(0.64) benign(0.005) TCGA-86-A4JF-01 14 95081374 95081374 T G SERPINA3 Missense_Mutation p.L199R 0.14 deleterious(0) probably_damaging(0.954) TCGA-86-A4JF-01 14 95670103 95670103 G - CLMN Frame_Shift_Del p.P528Qfs*6 0.21 TCGA-86-A4JF-01 14 96797768 96797768 C T ATG2B Missense_Mutation p.D559N 0.10 deleterious(0.04) probably_damaging(0.98) TCGA-86-A4JF-01 15 101719144 101719144 C T CHSY1 Silent p.K286K 0.12 TCGA-86-A4JF-01 15 23310040 23310040 T C HERC2P2 RNA 0.22 TCGA-86-A4JF-01 15 23932043 23932043 A G NDN Missense_Mutation p.Y108H 0.12 deleterious(0) benign(0.062) TCGA-86-A4JF-01 15 24923119 24923119 C T NPAP1 Missense_Mutation p.T702I 0.10 deleterious(0) probably_damaging(0.976) TCGA-86-A4JF-01 15 25222048 25222048 G T SNRPN Missense_Mutation p.A98S 0.13 tolerated(0.08) possibly_damaging(0.632) TCGA-86-A4JF-01 15 25346812 25346812 C A SNORD116-27 RNA 0.11 TCGA-86-A4JF-01 15 25346813 25346813 C T SNORD116-27 RNA 0.12 TCGA-86-A4JF-01 15 25444485 25444485 G T SNORD115-14 3'Flank 0.13 TCGA-86-A4JF-01 15 25453294 25453294 G T SNORD115-21 RNA 0.09 TCGA-86-A4JF-01 15 26812841 26812841 C G GABRB3 Missense_Mutation p.R241T 0.14 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 15 28358240 28358240 G A HERC2 Missense_Mutation p.R4737W 0.19 probably_damaging(0.999) TCGA-86-A4JF-01 15 38793416 38793416 G A RASGRP1 Silent p.G537G 0.07 TCGA-86-A4JF-01 15 40661144 40661144 G A DISP2 Missense_Mutation p.R944H 0.16 tolerated(0.2) benign(0.027) TCGA-86-A4JF-01 15 40917795 40917796 - A CASC5 Frame_Shift_Ins p.N1806Kfs*2 0.10 TCGA-86-A4JF-01 15 41813110 41813110 G A RPAP1 Missense_Mutation p.P1092S 0.10 tolerated(0.07) benign(0.114) TCGA-86-A4JF-01 15 42602977 42602977 C A GANC Silent p.I330I 0.09 TCGA-86-A4JF-01 15 42695111 42695111 C T CAPN3 Silent p.S552S 0.11 TCGA-86-A4JF-01 15 43021435 43021435 C T CDAN1 Missense_Mutation p.G845R 0.22 tolerated(0.48) probably_damaging(0.999) TCGA-86-A4JF-01 15 43675640 43675640 G C TUBGCP4 Missense_Mutation p.D221H 0.05 deleterious(0) benign(0.079) TCGA-86-A4JF-01 15 43820928 43820929 - G MAP1A Frame_Shift_Ins p.P2423Tfs*7 0.19 TCGA-86-A4JF-01 15 44094025 44094025 C T HYPK 3'UTR 0.24 TCGA-86-A4JF-01 15 45567805 45567806 - A SLC28A2 3'UTR 0.09 TCGA-86-A4JF-01 15 48414181 48414181 A G SLC24A5 Missense_Mutation p.I83M 0.08 deleterious(0.04) benign(0.028) TCGA-86-A4JF-01 15 48591463 48591463 C G SLC12A1 Silent p.V1029V 0.33 TCGA-86-A4JF-01 15 49285068 49285068 A G SECISBP2L Silent p.N893N 0.05 TCGA-86-A4JF-01 15 50168579 50168579 C A ATP8B4 Missense_Mutation p.G975W 0.24 tolerated(0.19) probably_damaging(0.998) TCGA-86-A4JF-01 15 52564029 52564029 G A MYO5C Nonsense_Mutation p.R255* 0.08 TCGA-86-A4JF-01 15 54630574 54630574 A T UNC13C Missense_Mutation p.S1534C 0.22 deleterious_low_confidence(0) possibly_damaging(0.653) TCGA-86-A4JF-01 15 54630678 54630678 A T UNC13C Silent p.L1568L 0.16 TCGA-86-A4JF-01 15 54841835 54841836 - C UNC13C Frame_Shift_Ins p.Q1943Pfs*8 0.08 TCGA-86-A4JF-01 15 59182579 59182579 T C SLTM Silent p.L660L 0.21 TCGA-86-A4JF-01 15 59813562 59813562 A G FAM81A Silent p.P364P 0.17 TCGA-86-A4JF-01 15 62241764 62241764 G T VPS13C Missense_Mutation p.A1546D 0.06 deleterious(0) possibly_damaging(0.901) TCGA-86-A4JF-01 15 63930647 63930647 A G HERC1 Missense_Mutation p.V4019A 0.20 benign(0.055) TCGA-86-A4JF-01 15 65347378 65347378 G A RASL12 Silent p.T220T 0.16 TCGA-86-A4JF-01 15 65744417 65744417 G A DPP8 Silent p.V781V 0.09 TCGA-86-A4JF-01 15 69072755 69072755 G A ANP32A Missense_Mutation p.L228F 0.14 tolerated_low_confidence(0.62) unknown(0) TCGA-86-A4JF-01 15 71196915 71196915 C T LRRC49 Silent p.I112I 0.18 TCGA-86-A4JF-01 15 73615988 73615988 T C HCN4 Missense_Mutation p.N816D 0.11 tolerated_low_confidence(0.14) unknown(0) TCGA-86-A4JF-01 15 75013576 75013576 C T CYP1A1 Missense_Mutation p.R377Q 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-86-A4JF-01 15 75091004 75091004 G A CSK Missense_Mutation p.G22S 0.07 tolerated(0.07) possibly_damaging(0.732) TCGA-86-A4JF-01 15 76161303 76161305 AGA - UBE2Q2 In_Frame_Del p.E135del 0.12 TCGA-86-A4JF-01 15 77345214 77345214 C G TSPAN3 Missense_Mutation p.E164Q 0.18 tolerated(0.33) benign(0.005) TCGA-86-A4JF-01 15 80478483 80478483 G T FAH Missense_Mutation p.G398W 0.15 deleterious(0) probably_damaging(0.997) TCGA-86-A4JF-01 15 81234625 81234625 G C KIAA1199 Missense_Mutation p.E1216Q 0.06 tolerated(0.82) benign(0.117) TCGA-86-A4JF-01 15 81592626 81592627 CT - IL16 Frame_Shift_Del p.Y988Ffs*51 0.10 TCGA-86-A4JF-01 15 85342390 85342390 G A ZNF592 Missense_Mutation p.R1029H 0.23 tolerated(0.05) probably_damaging(0.999) TCGA-86-A4JF-01 15 89400555 89400555 C A ACAN Missense_Mutation p.A1580D 0.10 tolerated(0.11) probably_damaging(0.942) TCGA-86-A4JF-01 15 90021104 90021104 G A RHCG Silent p.C313C 0.11 TCGA-86-A4JF-01 15 90611280 90611280 A G ZNF710 Missense_Mutation p.Y304C 0.08 deleterious(0) probably_damaging(0.994) TCGA-86-A4JF-01 15 90801385 90801385 C T TTLL13 Missense_Mutation p.R351C 0.10 tolerated(0.06) benign(0.03) TCGA-86-A4JF-01 15 91432605 91432605 G T FES Silent p.R246R 0.11 TCGA-86-A4JF-01 16 111421 111421 A G RHBDF1 Missense_Mutation p.Y453H 0.11 tolerated(0.06) possibly_damaging(0.836) TCGA-86-A4JF-01 16 1250458 1250458 G A CACNA1H Missense_Mutation p.A336T 0.14 tolerated(1) benign(0.016) TCGA-86-A4JF-01 16 1250561 1250561 C T CACNA1H Missense_Mutation p.A370V 0.08 tolerated(0.26) probably_damaging(0.998) TCGA-86-A4JF-01 16 1279735 1279735 G T TPSB2 Missense_Mutation p.P22Q 0.20 tolerated(0.05) probably_damaging(0.92) TCGA-86-A4JF-01 16 1279736 1279736 G T TPSB2 Missense_Mutation p.P22T 0.20 deleterious(0.05) benign(0.331) TCGA-86-A4JF-01 16 1291156 1291156 C A TPSAB1 Missense_Mutation p.P22T 0.15 deleterious(0.05) benign(0.178) TCGA-86-A4JF-01 16 1291157 1291157 C A TPSAB1 Missense_Mutation p.P22Q 0.15 tolerated(0.05) possibly_damaging(0.835) TCGA-86-A4JF-01 16 15208339 15208339 A G RP11-1186N24.5 RNA 0.17 TCGA-86-A4JF-01 16 1816098 1816098 A G MAPK8IP3 Missense_Mutation p.N861D 0.21 tolerated(0.27) benign(0.033) TCGA-86-A4JF-01 16 1827143 1827143 A G SPSB3 Silent p.S341S 0.16 TCGA-86-A4JF-01 16 18795989 18795989 A G RPS15A Intron 0.20 TCGA-86-A4JF-01 16 18804606 18804609 GTTT - ARL6IP1 Frame_Shift_Del p.K193Ffs*37 0.14 TCGA-86-A4JF-01 16 20043689 20043689 G A GPR139 Missense_Mutation p.R144C 0.17 deleterious(0) probably_damaging(0.998) TCGA-86-A4JF-01 16 20334220 20334220 C A GP2 Missense_Mutation p.C209F 0.12 deleterious(0) probably_damaging(0.997) TCGA-86-A4JF-01 16 20487007 20487007 T G ACSM2A Missense_Mutation p.V337G 0.12 tolerated(1) benign(0) TCGA-86-A4JF-01 16 21042406 21042406 C A DNAH3 Missense_Mutation p.W1800C 0.15 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 16 2162448 2162448 G A PKD1 Missense_Mutation p.A1063V 0.22 benign(0.004) TCGA-86-A4JF-01 16 21712308 21712308 T G OTOA Missense_Mutation p.S314A 0.31 tolerated(0.46) benign(0.024) TCGA-86-A4JF-01 16 2237002 2237002 C A CASKIN1 Missense_Mutation p.V303L 0.39 benign(0.325) TCGA-86-A4JF-01 16 23546229 23546229 T C EARS2 Missense_Mutation p.N313S 0.13 tolerated(0.34) benign(0.103) TCGA-86-A4JF-01 16 23641670 23641670 T A PALB2 Missense_Mutation p.Q602L 0.14 tolerated(0.39) benign(0.015) TCGA-86-A4JF-01 16 23702675 23702675 G A ERN2 Silent p.C864C 0.24 TCGA-86-A4JF-01 16 2373458 2373458 C T ABCA3 Intron 0.14 TCGA-86-A4JF-01 16 23769035 23769035 G T CHP2 3'UTR 0.32 TCGA-86-A4JF-01 16 24567011 24567011 T A RBBP6 Missense_Mutation p.Y142N 0.14 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-86-A4JF-01 16 25238510 25238510 G T AQP8 Nonsense_Mutation p.G242* 0.18 TCGA-86-A4JF-01 16 25251953 25251953 C T ZKSCAN2 Silent p.Q696Q 0.13 TCGA-86-A4JF-01 16 27454287 27454287 G C IL21R Missense_Mutation p.K119N 0.21 deleterious(0) probably_damaging(0.951) TCGA-86-A4JF-01 16 27481437 27481437 G A GTF3C1 Silent p.V1602V 0.19 TCGA-86-A4JF-01 16 27504015 27504015 C - GTF3C1 Frame_Shift_Del p.V966Wfs*31 0.10 TCGA-86-A4JF-01 16 2819185 2819187 TCC - SRRM2 In_Frame_Del p.S2648del 0.17 TCGA-86-A4JF-01 16 28855558 28855559 CA - TUFM Frame_Shift_Del p.V305Gfs*5 0.10 TCGA-86-A4JF-01 16 2983575 2983575 C T FLYWCH1 Missense_Mutation p.A413V 0.07 tolerated(0.33) benign(0.159) TCGA-86-A4JF-01 16 29990327 29990327 G A TAOK2 Missense_Mutation p.A129T 0.09 deleterious(0.01) possibly_damaging(0.685) TCGA-86-A4JF-01 16 29994920 29994920 T C TAOK2 Missense_Mutation p.S453P 0.21 tolerated(0.2) possibly_damaging(0.69) TCGA-86-A4JF-01 16 29998977 29998977 C T TAOK2 Silent p.P1128P 0.20 TCGA-86-A4JF-01 16 30021353 30021353 G - DOC2A Frame_Shift_Del p.P64Lfs*27 0.24 TCGA-86-A4JF-01 16 30392448 30392450 CTT - SEPT1 In_Frame_Del p.K191del 0.21 TCGA-86-A4JF-01 16 3100390 3100390 C T MMP25 Silent p.P168P 0.14 TCGA-86-A4JF-01 16 31154670 31154670 A T PRSS36 Missense_Mutation p.F365I 0.18 deleterious(0) probably_damaging(0.964) TCGA-86-A4JF-01 16 31471223 31471224 - A ARMC5 Frame_Shift_Ins p.T128Dfs*59 0.14 TCGA-86-A4JF-01 16 31473803 31473803 G A ARMC5 Missense_Mutation p.G312D 0.23 deleterious(0.02) possibly_damaging(0.839) TCGA-86-A4JF-01 16 31484836 31484836 G A TGFB1I1 Missense_Mutation p.E30K 0.20 tolerated(0.27) benign(0.026) TCGA-86-A4JF-01 16 3640560 3640560 C T SLX4 Missense_Mutation p.A1027T 0.14 tolerated(0.27) benign(0.011) TCGA-86-A4JF-01 16 3640876 3640876 C T SLX4 Silent p.E921E 0.06 TCGA-86-A4JF-01 16 3831292 3831292 T A CREBBP Missense_Mutation p.N530I 0.09 possibly_damaging(0.791) TCGA-86-A4JF-01 16 396621 396623 CTC - AXIN1 In_Frame_Del p.E135del 0.22 TCGA-86-A4JF-01 16 4500479 4500479 C T DNAJA3 Silent p.G440G 0.18 TCGA-86-A4JF-01 16 456350 456350 G T DECR2 Missense_Mutation p.G52C 0.19 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 16 46782069 46782069 C A MYLK3 Missense_Mutation p.G13W 0.22 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-86-A4JF-01 16 4911085 4911085 C T UBN1 Silent p.R364R 0.16 TCGA-86-A4JF-01 16 4934391 4934391 C T PPL Missense_Mutation p.R1422Q 0.17 tolerated(0.44) benign(0.022) TCGA-86-A4JF-01 16 49559343 49559343 G T ZNF423 Missense_Mutation p.L1214I 0.06 tolerated(0.3) benign(0.14) TCGA-86-A4JF-01 16 51174209 51174209 G T SALL1 Missense_Mutation p.L642M 0.07 tolerated(0.11) benign(0.182) TCGA-86-A4JF-01 16 55539444 55539444 A G MMP2 3'UTR 0.29 TCGA-86-A4JF-01 16 56701237 56701237 G A MT1G Silent p.T27T 0.18 TCGA-86-A4JF-01 16 56868087 56868087 G A NUP93 Missense_Mutation p.V529M 0.21 deleterious(0.01) benign(0.398) TCGA-86-A4JF-01 16 57486775 57486775 G A COQ9 Missense_Mutation p.R102H 0.20 deleterious(0.01) benign(0.247) TCGA-86-A4JF-01 16 57719704 57719704 G - GPR97 Frame_Shift_Del p.K471Rfs*18 0.17 TCGA-86-A4JF-01 16 57998443 57998443 G A CNGB1 Silent p.P55P 0.10 TCGA-86-A4JF-01 16 58537754 58537754 C - NDRG4 Frame_Shift_Del p.K79Rfs*82 0.14 TCGA-86-A4JF-01 16 61687567 61687567 C T CDH8 Missense_Mutation p.R782H 0.20 tolerated(0.11) probably_damaging(0.91) TCGA-86-A4JF-01 16 67236431 67236431 G A ELMO3 Missense_Mutation p.D518N 0.22 tolerated(0.49) possibly_damaging(0.515) TCGA-86-A4JF-01 16 67319111 67319111 C A PLEKHG4 Missense_Mutation p.L730I 0.08 tolerated(0.48) benign(0.002) TCGA-86-A4JF-01 16 67917626 67917626 C G EDC4 Silent p.L1335L 0.18 TCGA-86-A4JF-01 16 67965100 67965100 G T CTRL Nonsense_Mutation p.C19* 0.28 TCGA-86-A4JF-01 16 69364998 69364998 C T COG8 Missense_Mutation p.G528D 0.12 deleterious(0) probably_damaging(0.998) TCGA-86-A4JF-01 16 71318557 71318558 - T CMTR2 Frame_Shift_Ins p.S423Ifs*2 0.23 TCGA-86-A4JF-01 16 72110413 72110413 C A HPR Silent p.A160A 0.31 TCGA-86-A4JF-01 16 72198792 72198792 C A PMFBP1 Silent p.V12V 0.17 TCGA-86-A4JF-01 16 74942824 74942824 G T WDR59 Missense_Mutation p.P565H 0.24 deleterious(0) possibly_damaging(0.779) TCGA-86-A4JF-01 16 82182360 82182360 C T MPHOSPH6 Silent p.K153K 0.10 TCGA-86-A4JF-01 16 83999179 83999179 A G OSGIN1 Missense_Mutation p.Y334C 0.21 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 16 84212561 84212561 G A TAF1C Nonsense_Mutation p.R866* 0.32 TCGA-86-A4JF-01 16 84691285 84691285 G A KLHL36 Missense_Mutation p.R291H 0.26 deleterious(0) probably_damaging(0.98) TCGA-86-A4JF-01 16 8866748 8866748 C T ABAT Missense_Mutation p.R310W 0.07 deleterious(0.01) benign(0.036) TCGA-86-A4JF-01 16 88952473 88952473 G T CBFA2T3 Silent p.A263A 0.25 TCGA-86-A4JF-01 16 8949174 8949174 C T CARHSP1 Silent p.G97G 0.19 TCGA-86-A4JF-01 17 10322277 10322277 G A MYH8 Missense_Mutation p.A94V 0.14 tolerated(0.05) benign(0.031) TCGA-86-A4JF-01 17 10356525 10356525 C - MYH4 Frame_Shift_Del p.D1019Tfs*6 0.14 TCGA-86-A4JF-01 17 10368004 10368004 A T MYH4 Nonsense_Mutation p.L176* 0.08 TCGA-86-A4JF-01 17 10409179 10409179 G C MYH1 Missense_Mutation p.I708M 0.12 deleterious(0) probably_damaging(0.976) TCGA-86-A4JF-01 17 10419387 10419387 A T MYH1 Missense_Mutation p.L121M 0.16 deleterious(0) probably_damaging(0.979) TCGA-86-A4JF-01 17 10728646 10728646 C T PIRT Missense_Mutation p.C106Y 0.13 tolerated(0.1) probably_damaging(0.998) TCGA-86-A4JF-01 17 1183525 1183525 C - TUSC5 Frame_Shift_Del p.S79Pfs*90 0.17 TCGA-86-A4JF-01 17 12888090 12888090 C T ARHGAP44 Missense_Mutation p.P728S 0.08 deleterious_low_confidence(0.01) benign(0.122) TCGA-86-A4JF-01 17 13980264 13980264 A G COX10 Silent p.S130S 0.13 TCGA-86-A4JF-01 17 15935609 15935609 T C NCOR1 3'UTR 0.13 TCGA-86-A4JF-01 17 16526153 16526153 G T ZNF624 Missense_Mutation p.L683I 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-86-A4JF-01 17 16526763 16526763 T - ZNF624 Frame_Shift_Del p.A480Pfs*12 0.10 TCGA-86-A4JF-01 17 18137461 18137461 G A LLGL1 Missense_Mutation p.C229Y 0.17 tolerated(0.06) benign(0.005) TCGA-86-A4JF-01 17 18139956 18139956 C T LLGL1 Missense_Mutation p.S463L 0.15 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 17 18155796 18155796 G A FLII Missense_Mutation p.T363M 0.18 tolerated(0.06) possibly_damaging(0.534) TCGA-86-A4JF-01 17 18882019 18882019 T C FAM83G Silent p.E320E 0.09 TCGA-86-A4JF-01 17 19318606 19318606 C G RNF112 Nonsense_Mutation p.S435* 0.12 TCGA-86-A4JF-01 17 19845162 19845162 T C AKAP10 Missense_Mutation p.I346M 0.33 deleterious(0.03) possibly_damaging(0.459) TCGA-86-A4JF-01 17 21318723 21318723 C T KCNJ12 Silent p.V23V 0.08 TCGA-86-A4JF-01 17 21319080 21319080 C T KCNJ12 Silent p.T142T 0.07 TCGA-86-A4JF-01 17 25639400 25639400 T C WSB1 3'UTR 0.21 TCGA-86-A4JF-01 17 27085555 27085555 C T FAM222B Silent p.P474P 0.12 TCGA-86-A4JF-01 17 28445171 28445171 G A NSRP1 Missense_Mutation p.D32N 0.08 deleterious(0.02) possibly_damaging(0.829) TCGA-86-A4JF-01 17 29185289 29185289 A - ATAD5 Frame_Shift_Del p.K970Nfs*32 0.16 TCGA-86-A4JF-01 17 30183823 30183823 C G COPRS Missense_Mutation p.R54P 0.18 deleterious(0.03) benign(0.04) TCGA-86-A4JF-01 17 30814819 30814821 AAG - CDK5R1 In_Frame_Del p.K63del 0.15 TCGA-86-A4JF-01 17 34964956 34964956 A G MRM1 3'UTR 0.12 TCGA-86-A4JF-01 17 3635676 3635676 G T ITGAE Missense_Mutation p.L914I 0.19 deleterious(0.04) possibly_damaging(0.755) TCGA-86-A4JF-01 17 36520738 36520738 A G SOCS7 Silent p.L319L 0.09 TCGA-86-A4JF-01 17 36864105 36864105 C T MLLT6 Missense_Mutation p.P112S 0.37 deleterious(0.01) unknown(0) TCGA-86-A4JF-01 17 37188607 37188607 G A LRRC37A11P RNA 0.11 TCGA-86-A4JF-01 17 38922703 38922703 C A KRT26 3'UTR 0.15 TCGA-86-A4JF-01 17 39114809 39114809 G A KRT39 3'UTR 0.06 TCGA-86-A4JF-01 17 39155696 39155696 T C KRTAP3-2 3'UTR 0.23 TCGA-86-A4JF-01 17 39767353 39767353 G A KRT16 Missense_Mutation p.R301C 0.17 deleterious(0.04) benign(0.262) TCGA-86-A4JF-01 17 39880919 39880919 G C HAP1 3'UTR 0.17 TCGA-86-A4JF-01 17 40706834 40706834 C T HSD17B1 Missense_Mutation p.P289S 0.14 tolerated(0.15) benign(0.005) TCGA-86-A4JF-01 17 40843310 40843310 T C CNTNAP1 Missense_Mutation p.W739R 0.13 deleterious(0.01) possibly_damaging(0.703) TCGA-86-A4JF-01 17 42084749 42084749 G A NAGS Silent p.K385K 0.13 TCGA-86-A4JF-01 17 44096027 44096027 G T MAPT Missense_Mutation p.K682N 0.06 deleterious(0) benign(0.065) TCGA-86-A4JF-01 17 44171961 44171961 G T KANSL1 Missense_Mutation p.Q466K 0.13 deleterious(0.01) probably_damaging(0.99) TCGA-86-A4JF-01 17 4461259 4461259 G A GGT6 3'UTR 0.20 TCGA-86-A4JF-01 17 45822716 45822716 A G TBX21 Missense_Mutation p.N531S 0.13 tolerated_low_confidence(0.4) benign(0.003) TCGA-86-A4JF-01 17 4621236 4621236 G A ARRB2 Missense_Mutation p.G201D 0.20 deleterious(0) benign(0.02) TCGA-86-A4JF-01 17 4624301 4624301 G A ARRB2 Missense_Mutation p.M420I 0.10 tolerated(0.5) benign(0.438) TCGA-86-A4JF-01 17 47875697 47875697 T G KAT7 Silent p.A119A 0.07 TCGA-86-A4JF-01 17 48156231 48156231 G T ITGA3 Missense_Mutation p.G781C 0.18 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 17 48433335 48433335 A G XYLT2 Missense_Mutation p.T428A 0.08 tolerated(0.75) benign(0.159) TCGA-86-A4JF-01 17 48753301 48753301 G A ABCC3 Missense_Mutation p.A973T 0.11 tolerated(0.39) benign(0.082) TCGA-86-A4JF-01 17 5042417 5042417 G T USP6 Intron 0.32 TCGA-86-A4JF-01 17 51900842 51900842 C A KIF2B Missense_Mutation p.L150I 0.13 deleterious(0.04) benign(0.334) TCGA-86-A4JF-01 17 55956981 55956981 G A CUEDC1 Missense_Mutation p.P152L 0.12 tolerated(0.11) benign(0.411) TCGA-86-A4JF-01 17 56405184 56405185 - A BZRAP1 Frame_Shift_Ins p.G33Vfs*2 0.12 TCGA-86-A4JF-01 17 56659037 56659037 C T TEX14 Missense_Mutation p.E1082K 0.15 deleterious(0.01) possibly_damaging(0.788) TCGA-86-A4JF-01 17 56659049 56659049 C T TEX14 Missense_Mutation p.D1078N 0.14 deleterious(0.02) possibly_damaging(0.519) TCGA-86-A4JF-01 17 56659055 56659055 A T TEX14 Missense_Mutation p.S1076T 0.14 deleterious(0.02) probably_damaging(0.934) TCGA-86-A4JF-01 17 57138430 57138431 AC - TRIM37 Frame_Shift_Del p.F328Sfs*9 0.12 TCGA-86-A4JF-01 17 58011874 58011874 C T RPS6KB1 Silent p.L287L 0.15 TCGA-86-A4JF-01 17 59115354 59115354 A C BCAS3 Missense_Mutation p.I638L 0.16 deleterious(0.03) benign(0.406) TCGA-86-A4JF-01 17 59557522 59557522 C T TBX4 Missense_Mutation p.P288L 0.10 tolerated(0.37) benign(0.062) TCGA-86-A4JF-01 17 60799894 60799894 A G MARCH10 Silent p.G723G 0.10 TCGA-86-A4JF-01 17 62034786 62034786 C T SCN4A Silent p.T704T 0.19 TCGA-86-A4JF-01 17 65907073 65907073 G C BPTF Missense_Mutation p.E1025Q 0.17 benign(0.3) TCGA-86-A4JF-01 17 65907696 65907696 G C BPTF Missense_Mutation p.K1232N 0.14 possibly_damaging(0.637) TCGA-86-A4JF-01 17 6590910 6590910 G A SLC13A5 Missense_Mutation p.P505S 0.17 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 17 65955973 65955973 C T BPTF Missense_Mutation p.T2748M 0.06 probably_damaging(0.995) TCGA-86-A4JF-01 17 66533671 66533671 C T FAM20A Missense_Mutation p.G525S 0.13 tolerated(0.14) benign(0.028) TCGA-86-A4JF-01 17 67136823 67136823 C T ABCA6 Missense_Mutation p.V8M 0.07 deleterious(0.03) possibly_damaging(0.755) TCGA-86-A4JF-01 17 6905074 6905076 GAG - ALOX12 In_Frame_Del p.E369del 0.22 TCGA-86-A4JF-01 17 7161910 7161910 C G ELP5 Missense_Mutation p.Q215E 0.11 tolerated(1) benign(0.186) TCGA-86-A4JF-01 17 72470012 72470012 G T CD300A Silent p.P126P 0.21 TCGA-86-A4JF-01 17 72694573 72694573 A G CD300LF Missense_Mutation p.I165T 0.13 deleterious(0.02) benign(0.035) TCGA-86-A4JF-01 17 73228042 73228042 G A NUP85 Missense_Mutation p.R455Q 0.15 tolerated(0.08) possibly_damaging(0.701) TCGA-86-A4JF-01 17 7365426 7365426 C T ZBTB4 Missense_Mutation p.G959R 0.19 possibly_damaging(0.716) TCGA-86-A4JF-01 17 73780837 73780837 C A UNK 5'Flank 0.17 TCGA-86-A4JF-01 17 7401417 7401417 G - POLR2A Frame_Shift_Del p.N410Tfs*60 0.18 TCGA-86-A4JF-01 17 74084855 74084855 G C EXOC7 Silent p.L450L 0.13 TCGA-86-A4JF-01 17 7578275 7578277 GAG - TP53 In_Frame_Del p.P191del 0.31 TCGA-86-A4JF-01 17 7579420 7579420 G - TP53 Frame_Shift_Del p.S90Pfs*33 0.14 TCGA-86-A4JF-01 17 76567820 76567820 G A DNAH17 Missense_Mutation p.T195I 0.18 possibly_damaging(0.717) TCGA-86-A4JF-01 17 77710989 77710989 C T ENPP7 Silent p.C392C 0.24 TCGA-86-A4JF-01 17 77808392 77808392 G A CBX4 Missense_Mutation p.P350L 0.24 tolerated(0.09) probably_damaging(0.997) TCGA-86-A4JF-01 17 7796626 7796626 C T CHD3 Missense_Mutation p.P237S 0.24 possibly_damaging(0.542) TCGA-86-A4JF-01 17 78063585 78063585 A T CCDC40 Nonsense_Mutation p.K912* 0.16 TCGA-86-A4JF-01 17 78079593 78079593 C A GAA Missense_Mutation p.P198T 0.20 deleterious(0.03) possibly_damaging(0.762) TCGA-86-A4JF-01 17 78221997 78221997 G T SLC26A11 Missense_Mutation p.A455S 0.21 deleterious(0.04) benign(0.288) TCGA-86-A4JF-01 17 78319600 78319600 G A RNF213 Missense_Mutation p.A2489T 0.12 probably_damaging(1) TCGA-86-A4JF-01 17 79173301 79173301 C A AZI1 Nonsense_Mutation p.E358* 0.29 TCGA-86-A4JF-01 17 79479369 79479369 C A ACTG1 Missense_Mutation p.E4D 0.26 tolerated_low_confidence(0.71) benign(0.001) TCGA-86-A4JF-01 17 79512907 79512907 G A C17orf70 Silent p.G725G 0.19 TCGA-86-A4JF-01 17 79682017 79682017 G A SLC25A10 Missense_Mutation p.R43H 0.17 tolerated(0.11) possibly_damaging(0.84) TCGA-86-A4JF-01 17 80352267 80352267 C G OGFOD3 Missense_Mutation p.E326Q 0.18 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-86-A4JF-01 17 80402374 80402374 G A C17orf62 Missense_Mutation p.A131V 0.19 tolerated(0.32) benign(0.012) TCGA-86-A4JF-01 17 8135236 8135236 G A CTC1 Silent p.D790D 0.12 TCGA-86-A4JF-01 17 8384696 8384696 G A MYH10 Silent p.H1736H 0.15 TCGA-86-A4JF-01 17 9885172 9885172 G C GAS7 Missense_Mutation p.P112A 0.21 tolerated(0.19) benign(0.007) TCGA-86-A4JF-01 18 13645226 13645226 A G LDLRAD4 Missense_Mutation p.H164R 0.22 tolerated(0.08) probably_damaging(0.992) TCGA-86-A4JF-01 18 21739516 21739516 C A CABYR Missense_Mutation p.Q208K 0.16 tolerated(0.26) benign(0.154) TCGA-86-A4JF-01 18 22804642 22804642 C G ZNF521 Silent p.L1080L 0.11 TCGA-86-A4JF-01 18 28914165 28914165 G T DSG1 Missense_Mutation p.K335N 0.18 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 18 28993610 28993610 A G DSG4 3'UTR 0.21 TCGA-86-A4JF-01 18 29055683 29055683 C T DSG3 Silent p.G820G 0.19 TCGA-86-A4JF-01 18 29055782 29055783 - A DSG3 Frame_Shift_Ins p.L856Tfs*9 0.08 TCGA-86-A4JF-01 18 29419276 29419276 T - TRAPPC8 Frame_Shift_Del p.S1328Afs*4 0.22 TCGA-86-A4JF-01 18 30977140 30977140 C G CCDC178 Missense_Mutation p.E31Q 0.13 tolerated(0.08) benign(0.006) TCGA-86-A4JF-01 18 31326342 31326342 T A ASXL3 Missense_Mutation p.I2177N 0.12 possibly_damaging(0.649) TCGA-86-A4JF-01 18 44560034 44560034 G T TCEB3B Silent p.A534A 0.19 TCGA-86-A4JF-01 18 44560256 44560256 T C TCEB3B Silent p.S460S 0.15 TCGA-86-A4JF-01 18 47361761 47361761 T C MYO5B Missense_Mutation p.N1783D 0.23 tolerated(0.51) probably_damaging(0.999) TCGA-86-A4JF-01 18 47373650 47373650 G A MYO5B Missense_Mutation p.A1442V 0.29 tolerated(0.21) benign(0.371) TCGA-86-A4JF-01 18 47809067 47809067 G A CXXC1 Missense_Mutation p.R627C 0.11 deleterious(0.02) probably_damaging(0.994) TCGA-86-A4JF-01 18 47917649 47917649 C T SKA1 Missense_Mutation p.T202M 0.15 deleterious(0.02) possibly_damaging(0.708) TCGA-86-A4JF-01 18 48473656 48473656 C T ME2 3'UTR 0.19 TCGA-86-A4JF-01 18 48573373 48573373 A G SMAD4 5'UTR 0.15 TCGA-86-A4JF-01 18 52265362 52265362 A G DYNAP Missense_Mutation p.T207A 0.15 deleterious_low_confidence(0) unknown(0) TCGA-86-A4JF-01 18 56205031 56205031 C T ALPK2 Silent p.R796R 0.21 TCGA-86-A4JF-01 18 56278986 56278986 A - ALPK2 Frame_Shift_Del p.L15Yfs*20 0.12 TCGA-86-A4JF-01 18 580764 580764 G A CETN1 Missense_Mutation p.G119E 0.11 deleterious(0) probably_damaging(0.998) TCGA-86-A4JF-01 18 59212338 59212338 G T CDH20 Missense_Mutation p.A537S 0.09 tolerated(0.21) probably_damaging(0.943) TCGA-86-A4JF-01 18 63530048 63530048 G A CDH7 Missense_Mutation p.A587T 0.16 tolerated(0.65) benign(0.065) TCGA-86-A4JF-01 18 64176481 64176481 T C CDH19 Missense_Mutation p.N527D 0.20 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 18 6986274 6986274 T C LAMA1 Silent p.K1747K 0.17 TCGA-86-A4JF-01 18 71797722 71797722 G A FBXO15 Silent p.A168A 0.22 TCGA-86-A4JF-01 18 76753582 76753582 C T SALL3 Missense_Mutation p.P531S 0.31 tolerated(0.14) possibly_damaging(0.593) TCGA-86-A4JF-01 18 77473100 77473100 C T CTDP1 Missense_Mutation p.A331V 0.19 deleterious(0.03) probably_damaging(1) TCGA-86-A4JF-01 18 77896436 77896436 A G ADNP2 Missense_Mutation p.E1047G 0.20 deleterious(0.04) benign(0.057) TCGA-86-A4JF-01 18 8718561 8718561 G A SOGA2 Missense_Mutation p.R38Q 0.15 deleterious(0) probably_damaging(0.997) TCGA-86-A4JF-01 18 9516869 9516869 G C RALBP1 Missense_Mutation p.D91H 0.11 deleterious(0) probably_damaging(0.995) TCGA-86-A4JF-01 19 10089889 10089889 T A COL5A3 Silent p.L931L 0.18 TCGA-86-A4JF-01 19 10224818 10224818 G A PPAN-P2RY11 Missense_Mutation p.A597T 0.10 tolerated_low_confidence(0.57) benign(0) TCGA-86-A4JF-01 19 10381832 10381832 C T ICAM1 5'UTR 0.25 TCGA-86-A4JF-01 19 10795029 10795051 CTCTGTGCCCTTTTTCAAAAGAA - ILF3 Intron 0.13 TCGA-86-A4JF-01 19 11221369 11221369 G A LDLR Missense_Mutation p.V328I 0.24 tolerated(1) benign(0) TCGA-86-A4JF-01 19 11258792 11258792 G A SPC24 Nonsense_Mutation p.Q103* 0.23 TCGA-86-A4JF-01 19 11492777 11492777 C T EPOR Missense_Mutation p.E86K 0.32 deleterious(0.01) probably_damaging(0.972) TCGA-86-A4JF-01 19 11944478 11944478 T C ZNF440 3'UTR 0.08 TCGA-86-A4JF-01 19 12222351 12222351 G C ZNF788 5'UTR 0.31 TCGA-86-A4JF-01 19 1223131 1223131 C T STK11 Silent p.I356I 0.29 TCGA-86-A4JF-01 19 12358827 12358827 A G ZNF44 Silent p.C296C 0.25 TCGA-86-A4JF-01 19 12918074 12918074 A G RNASEH2A Missense_Mutation p.D85G 0.08 tolerated(0.27) benign(0.012) TCGA-86-A4JF-01 19 12976219 12976219 C A MAST1 Silent p.I576I 0.21 TCGA-86-A4JF-01 19 14508934 14508934 G A CD97 Missense_Mutation p.A294T 0.28 tolerated(0.06) benign(0.056) TCGA-86-A4JF-01 19 14562741 14562741 C - PKN1 Frame_Shift_Del p.F366Sfs*2 0.25 TCGA-86-A4JF-01 19 1506029 1506029 C T ADAMTSL5 Silent p.R467R 0.22 TCGA-86-A4JF-01 19 15079159 15079159 C T SLC1A6 Silent p.R168R 0.19 TCGA-86-A4JF-01 19 15734146 15734146 C A CYP4F8 RNA 0.19 TCGA-86-A4JF-01 19 16038020 16038020 A G CYP4F11 Splice_Site p.X175_splice 0.12 TCGA-86-A4JF-01 19 16515465 16515465 C T EPS15L1 Silent p.Q454Q 0.12 TCGA-86-A4JF-01 19 17013617 17013617 G C CPAMD8 Silent p.L1556L 0.15 TCGA-86-A4JF-01 19 17441757 17441757 G A ANO8 Silent p.N291N 0.09 TCGA-86-A4JF-01 19 17836781 17836781 C - MAP1S Frame_Shift_Del p.P198Rfs*93 0.13 TCGA-86-A4JF-01 19 1818718 1818718 C T REXO1 Silent p.K963K 0.15 TCGA-86-A4JF-01 19 18260412 18260412 T C MAST3 Missense_Mutation p.V1269A 0.10 deleterious_low_confidence(0.02) probably_damaging(0.99) TCGA-86-A4JF-01 19 18778620 18778620 G A KLHL26 Missense_Mutation p.G138D 0.06 tolerated(0.37) probably_damaging(0.998) TCGA-86-A4JF-01 19 19043762 19043762 G A HOMER3 Silent p.R168R 0.26 TCGA-86-A4JF-01 19 19655558 19655558 G A CILP2 Missense_Mutation p.R735H 0.23 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 19 19748179 19748180 - A GMIP Frame_Shift_Ins p.L373Ffs*22 0.22 TCGA-86-A4JF-01 19 19766207 19766207 G A ATP13A1 Silent p.I484I 0.08 TCGA-86-A4JF-01 19 21300183 21300183 A G ZNF714 Missense_Mutation p.Y238C 0.14 deleterious(0.02) benign(0.443) TCGA-86-A4JF-01 19 21719123 21719123 G C ZNF429 Missense_Mutation p.D90H 0.07 tolerated(0.08) benign(0.087) TCGA-86-A4JF-01 19 21991863 21991863 G A ZNF43 Missense_Mutation p.P326S 0.07 tolerated(1) benign(0.003) TCGA-86-A4JF-01 19 2222509 2222509 C T DOT1L Missense_Mutation p.A1114V 0.24 tolerated_low_confidence(0.08) probably_damaging(0.987) TCGA-86-A4JF-01 19 2227084 2227084 G A DOT1L Missense_Mutation p.A1522T 0.29 tolerated_low_confidence(0.94) benign(0.003) TCGA-86-A4JF-01 19 22605106 22605106 G A ZNF98 5'UTR 0.16 TCGA-86-A4JF-01 19 22784160 22784160 A T AC011467.1 5'Flank 0.25 TCGA-86-A4JF-01 19 22941438 22941438 A T ZNF99 Missense_Mutation p.C425S 0.19 deleterious(0) possibly_damaging(0.535) TCGA-86-A4JF-01 19 2432467 2432467 T A LMNB2 Missense_Mutation p.I513F 0.15 deleterious(0) probably_damaging(0.996) TCGA-86-A4JF-01 19 30314759 30314759 T C CCNE1 3'UTR 0.24 TCGA-86-A4JF-01 19 30505875 30505875 C T URI1 Missense_Mutation p.P503S 0.20 deleterious(0.03) possibly_damaging(0.45) TCGA-86-A4JF-01 19 30934613 30934613 C G ZNF536 Silent p.P48P 0.22 TCGA-86-A4JF-01 19 30934614 30934614 G A ZNF536 Missense_Mutation p.E49K 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.54) TCGA-86-A4JF-01 19 32873381 32873382 TG - ZNF507 Frame_Shift_Del p.C791Wfs*5 0.14 TCGA-86-A4JF-01 19 33113434 33113434 C T ANKRD27 Missense_Mutation p.R574H 0.14 deleterious(0) possibly_damaging(0.812) TCGA-86-A4JF-01 19 33392233 33392235 TCT - CEP89 In_Frame_Del p.K550del 0.21 TCGA-86-A4JF-01 19 35512615 35512615 G T GRAMD1A Nonsense_Mutation p.E534* 0.06 TCGA-86-A4JF-01 19 3595672 3595672 G A TBXA2R Intron 0.38 TCGA-86-A4JF-01 19 36050968 36050968 C T ATP4A Silent p.V265V 0.07 TCGA-86-A4JF-01 19 36352500 36352500 G A KIRREL2 Missense_Mutation p.R416H 0.19 deleterious(0.01) possibly_damaging(0.891) TCGA-86-A4JF-01 19 36398431 36398431 C G TYROBP Missense_Mutation p.G49A 0.07 tolerated(0.3) probably_damaging(1) TCGA-86-A4JF-01 19 36674505 36674505 G A ZNF565 Silent p.C121C 0.05 TCGA-86-A4JF-01 19 3746678 3746678 A G TJP3 Missense_Mutation p.S745G 0.17 tolerated(0.13) benign(0.001) TCGA-86-A4JF-01 19 38817629 38817629 G A KCNK6 Splice_Site p.X240_splice 0.15 TCGA-86-A4JF-01 19 38845464 38845464 A T CATSPERG Missense_Mutation p.Y371F 0.15 tolerated(0.18) benign(0) TCGA-86-A4JF-01 19 38845474 38845474 C T CATSPERG Silent p.F374F 0.15 TCGA-86-A4JF-01 19 38981297 38981297 G A RYR1 Missense_Mutation p.E2018K 0.07 benign(0.044) TCGA-86-A4JF-01 19 39575753 39575753 T G PAPL 5'UTR 0.22 TCGA-86-A4JF-01 19 39663960 39663960 C T PAK4 Missense_Mutation p.R203W 0.47 deleterious(0) benign(0.432) TCGA-86-A4JF-01 19 3982312 3982312 C A EEF2 Missense_Mutation p.E241D 0.20 tolerated(0.25) benign(0) TCGA-86-A4JF-01 19 39914977 39914977 C - PLEKHG2 Frame_Shift_Del p.P1069Lfs*136 0.16 TCGA-86-A4JF-01 19 39962243 39962243 A G SUPT5H Splice_Site p.X609_splice 0.25 TCGA-86-A4JF-01 19 40363060 40363060 C A FCGBP Missense_Mutation p.A5004S 0.23 benign(0.053) TCGA-86-A4JF-01 19 40363172 40363172 G A FCGBP Silent p.G4966G 0.23 TCGA-86-A4JF-01 19 40419850 40419850 A G FCGBP Silent p.C1048C 0.17 TCGA-86-A4JF-01 19 41597673 41597673 C T CYP2A13 Missense_Mutation p.P231S 0.14 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 19 42489231 42489231 T A ATP1A3 Missense_Mutation p.I291F 0.23 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 19 42489290 42489290 C A ATP1A3 Missense_Mutation p.G271V 0.16 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 19 42566969 42566969 C G GRIK5 Missense_Mutation p.G95R 0.08 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 19 42753391 42753391 G A ERF Silent p.G291G 0.35 TCGA-86-A4JF-01 19 42821935 42821935 G T TMEM145 Silent p.A325A 0.18 TCGA-86-A4JF-01 19 43269750 43269750 G T PSG8 5'UTR 0.15 TCGA-86-A4JF-01 19 43528955 43528955 G A PSG11 Silent p.S106S 0.36 TCGA-86-A4JF-01 19 4431958 4431958 G A CHAF1A Missense_Mutation p.D653N 0.10 deleterious(0.04) probably_damaging(0.995) TCGA-86-A4JF-01 19 44536666 44536666 C T ZNF222 Missense_Mutation p.T320I 0.17 deleterious(0.02) benign(0.087) TCGA-86-A4JF-01 19 44681715 44681715 G A ZNF226 Missense_Mutation p.R767Q 0.19 tolerated(0.08) possibly_damaging(0.523) TCGA-86-A4JF-01 19 44738938 44738938 A G ZNF227 Missense_Mutation p.I119V 0.22 deleterious(0.02) probably_damaging(0.952) TCGA-86-A4JF-01 19 4513302 4513302 C T PLIN4 Missense_Mutation p.V210M 0.14 tolerated(0.19) benign(0.025) TCGA-86-A4JF-01 19 45260649 45260649 C T BCL3 Missense_Mutation p.R264C 0.14 tolerated(0.09) benign(0.086) TCGA-86-A4JF-01 19 4550271 4550271 C T SEMA6B Missense_Mutation p.A379T 0.12 deleterious(0.01) benign(0.355) TCGA-86-A4JF-01 19 46094048 46094048 C T GPR4 Silent p.P359P 0.21 TCGA-86-A4JF-01 19 46195200 46195200 G C SNRPD2 5'UTR 0.27 TCGA-86-A4JF-01 19 46201830 46201832 TCT - QPCTL In_Frame_Del p.F221del 0.12 TCGA-86-A4JF-01 19 46352037 46352037 T C SYMPK Missense_Mutation p.M133V 0.09 tolerated(0.98) benign(0.154) TCGA-86-A4JF-01 19 47207625 47207625 C G PRKD2 Silent p.L230L 0.14 TCGA-86-A4JF-01 19 47775020 47775020 G C CCDC9 3'UTR 0.31 TCGA-86-A4JF-01 19 47884519 47884519 C T DHX34 Missense_Mutation p.T1079M 0.20 deleterious(0) probably_damaging(0.993) TCGA-86-A4JF-01 19 48342973 48342973 G A CRX Missense_Mutation p.G217S 0.17 deleterious(0.02) probably_damaging(0.954) TCGA-86-A4JF-01 19 49416366 49416366 A G NUCB1 Silent p.S193S 0.24 TCGA-86-A4JF-01 19 49519561 49519561 C T LHB Missense_Mutation p.V64M 0.05 deleterious(0) probably_damaging(0.988) TCGA-86-A4JF-01 19 49565009 49565009 C T NTF4 Silent p.V82V 0.29 TCGA-86-A4JF-01 19 49621640 49621640 T C LIN7B 3'UTR 0.19 TCGA-86-A4JF-01 19 50157971 50157971 T G SCAF1 Silent p.S1154S 0.10 TCGA-86-A4JF-01 19 50360277 50360277 G A PTOV1 Missense_Mutation p.V202M 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-86-A4JF-01 19 50412792 50412792 C - NUP62 Frame_Shift_Del p.I92Sfs*8 0.16 TCGA-86-A4JF-01 19 50730196 50730196 T C MYH14 Missense_Mutation p.Y283H 0.09 deleterious(0.04) benign(0.037) TCGA-86-A4JF-01 19 5077464 5077464 G A KDM4B Missense_Mutation p.G255R 0.22 probably_damaging(0.969) TCGA-86-A4JF-01 19 50905061 50905061 C G POLD1 Missense_Mutation p.P115A 0.11 tolerated(0.07) benign(0.018) TCGA-86-A4JF-01 19 51452336 51452336 G A KLK5 Missense_Mutation p.S124L 0.17 tolerated(0.12) benign(0.191) TCGA-86-A4JF-01 19 51532654 51532654 C A KLK12 Silent p.G217G 0.19 TCGA-86-A4JF-01 19 51728598 51728598 C A CD33 Silent p.S54S 0.20 TCGA-86-A4JF-01 19 51919307 51919307 A T SIGLEC10 Missense_Mutation p.L290Q 0.18 deleterious(0.04) probably_damaging(0.996) TCGA-86-A4JF-01 19 52033148 52033148 G - SIGLEC6 Frame_Shift_Del p.P281Lfs*4 0.14 TCGA-86-A4JF-01 19 52505473 52505473 C A ZNF615 Missense_Mutation p.S26I 0.15 deleterious(0.01) benign(0.02) TCGA-86-A4JF-01 19 52709292 52709292 C T PPP2R1A Silent p.G82G 0.06 TCGA-86-A4JF-01 19 53117856 53117856 G A ZNF83 5'UTR 0.13 TCGA-86-A4JF-01 19 53270802 53270802 G A ZNF600 Silent p.S69S 0.17 TCGA-86-A4JF-01 19 53884868 53884868 C T ZNF525 Missense_Mutation p.R346C 0.26 deleterious(0) possibly_damaging(0.653) TCGA-86-A4JF-01 19 54401748 54401748 A - PRKCG Frame_Shift_Del p.K384Rfs*3 0.17 TCGA-86-A4JF-01 19 5456227 5456227 C T ZNRF4 Missense_Mutation p.P242L 0.11 tolerated(0.81) benign(0.018) TCGA-86-A4JF-01 19 54720927 54720929 CTT - LILRB3 3'UTR 0.22 TCGA-86-A4JF-01 19 54778662 54778662 G - LILRB2 Frame_Shift_Del p.Q558Rfs*3 0.16 TCGA-86-A4JF-01 19 54965621 54965621 G A LENG8 Missense_Mutation p.G147S 0.15 tolerated(0.19) benign(0.036) TCGA-86-A4JF-01 19 55044019 55044019 C - KIR3DX1 Frame_Shift_Del p.K4Nfs*12 0.16 TCGA-86-A4JF-01 19 55087350 55087350 G C LILRA2 Silent p.L343L 0.15 TCGA-86-A4JF-01 19 55176298 55176298 C T LILRB4 Missense_Mutation p.A235V 0.17 tolerated(0.29) benign(0.034) TCGA-86-A4JF-01 19 55247296 55247296 T C KIR3DL3 Missense_Mutation p.V355A 0.13 tolerated(0.06) benign(0.206) TCGA-86-A4JF-01 19 55494392 55494392 G T NLRP2 Missense_Mutation p.Q442H 0.26 tolerated(0.31) benign(0.002) TCGA-86-A4JF-01 19 55502029 55502029 G A NLRP2 Silent p.L899L 0.10 TCGA-86-A4JF-01 19 56701359 56701359 T C ZSCAN5B Missense_Mutation p.K442R 0.17 tolerated(0.22) benign(0.046) TCGA-86-A4JF-01 19 56733476 56733476 C - ZSCAN5A Frame_Shift_Del p.G320Afs*11 0.13 TCGA-86-A4JF-01 19 57134042 57134042 G A ZNF71 Missense_Mutation p.E463K 0.10 deleterious(0.01) probably_damaging(0.98) TCGA-86-A4JF-01 19 57175896 57175897 CA - ZNF835 Frame_Shift_Del p.C224Rfs*23 0.17 TCGA-86-A4JF-01 19 57647048 57647048 C T ZIM3 Silent p.E219E 0.19 TCGA-86-A4JF-01 19 5789318 5789318 G A DUS3L Missense_Mutation p.A267V 0.24 tolerated(0.4) benign(0) TCGA-86-A4JF-01 19 5789319 5789319 C A DUS3L Missense_Mutation p.A267S 0.24 tolerated(0.76) benign(0.001) TCGA-86-A4JF-01 19 58572946 58572946 A T ZNF135 Splice_Site p.X24_splice 0.15 TCGA-86-A4JF-01 19 58863777 58863777 G A A1BG Missense_Mutation p.P162L 0.05 tolerated(0.1) benign(0.103) TCGA-86-A4JF-01 19 58863967 58863967 C T A1BG Intron 0.11 TCGA-86-A4JF-01 19 58867521 58867521 C - ZNF497 Frame_Shift_Del p.G494Afs*11 0.18 TCGA-86-A4JF-01 19 59028440 59028440 C T ZBTB45 Missense_Mutation p.A201T 0.05 tolerated(0.21) benign(0.096) TCGA-86-A4JF-01 19 59059660 59059660 G A TRIM28 Splice_Site p.X368_splice 0.18 TCGA-86-A4JF-01 19 6212980 6212980 A G MLLT1 3'UTR 0.14 TCGA-86-A4JF-01 19 6262268 6262268 T C MLLT1 Missense_Mutation p.M83V 0.16 deleterious(0) benign(0.18) TCGA-86-A4JF-01 19 6306730 6306730 A G ACER1 Missense_Mutation p.C264R 0.21 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 19 6432077 6432077 C T SLC25A41 Missense_Mutation p.A116T 0.16 deleterious(0.03) benign(0.331) TCGA-86-A4JF-01 19 7531954 7531954 C T ARHGEF18 Intron 0.22 TCGA-86-A4JF-01 19 7690786 7690786 G A XAB2 Missense_Mutation p.R268C 0.18 deleterious(0) probably_damaging(0.996) TCGA-86-A4JF-01 19 7808049 7808049 C G CD209 Missense_Mutation p.W364S 0.20 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 19 7830594 7830594 G A CLEC4M Silent p.Q95Q 0.22 TCGA-86-A4JF-01 19 8046013 8046014 - CT ELAVL1 Frame_Shift_Ins p.A77Efs*6 0.19 TCGA-86-A4JF-01 19 9046721 9046721 C A MUC16 Missense_Mutation p.S11637I 0.25 benign(0.387) TCGA-86-A4JF-01 19 9073568 9073568 A C MUC16 Silent p.S4626S 0.08 TCGA-86-A4JF-01 19 9076437 9076437 G T MUC16 Missense_Mutation p.A3670E 0.13 unknown(0) TCGA-86-A4JF-01 19 9362421 9362421 C G OR7E24 Missense_Mutation p.F234L 0.09 tolerated(0.27) benign(0.074) TCGA-86-A4JF-01 19 9965293 9965293 T C OLFM2 Missense_Mutation p.T312A 0.13 tolerated(0.17) benign(0.085) TCGA-86-A4JF-01 1 100327118 100327118 A G AGL Missense_Mutation p.T48A 0.23 deleterious(0.04) benign(0.41) TCGA-86-A4JF-01 1 100382040 100382040 A T AGL Missense_Mutation p.Y1445F 0.19 deleterious(0.02) probably_damaging(1) TCGA-86-A4JF-01 1 103573742 103573742 C G COL11A1 5'UTR 0.09 TCGA-86-A4JF-01 1 103573753 103573753 C T COL11A1 5'UTR 0.09 TCGA-86-A4JF-01 1 10511697 10511697 A C APITD1-CORT 3'UTR 0.38 TCGA-86-A4JF-01 1 108313263 108313263 C G VAV3 Missense_Mutation p.E215Q 0.10 tolerated(0.29) probably_damaging(1) TCGA-86-A4JF-01 1 109265169 109265169 G A FNDC7 Missense_Mutation p.D271N 0.19 tolerated(0.22) benign(0.014) TCGA-86-A4JF-01 1 109395283 109395283 C A AKNAD1 Missense_Mutation p.D2Y 0.17 deleterious(0) probably_damaging(0.982) TCGA-86-A4JF-01 1 109607069 109607069 G A TAF13 3'UTR 0.16 TCGA-86-A4JF-01 1 109793738 109793738 C T CELSR2 Missense_Mutation p.S346F 0.13 deleterious(0) probably_damaging(0.992) TCGA-86-A4JF-01 1 109793743 109793743 G T CELSR2 Missense_Mutation p.V348L 0.12 tolerated(0.54) benign(0.405) TCGA-86-A4JF-01 1 109793759 109793759 G A CELSR2 Missense_Mutation p.G353D 0.09 deleterious(0.03) possibly_damaging(0.771) TCGA-86-A4JF-01 1 109824316 109824316 G A PSRC1 Silent p.L148L 0.09 TCGA-86-A4JF-01 1 110655130 110655130 G T UBL4B 5'UTR 0.08 TCGA-86-A4JF-01 1 110766161 110766161 C T KCNC4 Silent p.T418T 0.24 TCGA-86-A4JF-01 1 110925481 110925481 G A SLC16A4 Silent p.I65I 0.04 TCGA-86-A4JF-01 1 111147389 111147389 C T KCNA2 Missense_Mutation p.G6R 0.21 deleterious_low_confidence(0.05) benign(0.26) TCGA-86-A4JF-01 1 114354781 114354781 A G RSBN1 Missense_Mutation p.V85A 0.25 tolerated_low_confidence(0.12) benign(0.294) TCGA-86-A4JF-01 1 115167965 115167965 C T DENND2C Missense_Mutation p.R214H 0.23 deleterious(0.03) probably_damaging(0.975) TCGA-86-A4JF-01 1 115223068 115223068 G A AMPD1 Silent p.D226D 0.11 TCGA-86-A4JF-01 1 115266615 115266615 T C CSDE1 Missense_Mutation p.I634V 0.27 tolerated(0.4) benign(0.001) TCGA-86-A4JF-01 1 116937891 116937891 G A ATP1A1 Missense_Mutation p.R607Q 0.19 tolerated(0.12) probably_damaging(0.999) TCGA-86-A4JF-01 1 116941625 116941625 G A ATP1A1 Silent p.P789P 0.07 TCGA-86-A4JF-01 1 117122188 117122188 G A IGSF3 Missense_Mutation p.R1074C 0.08 deleterious(0.02) benign(0.028) TCGA-86-A4JF-01 1 117619351 117619351 A G TTF2 Silent p.Q493Q 0.09 TCGA-86-A4JF-01 1 118413128 118413128 A T GDAP2 3'UTR 0.11 TCGA-86-A4JF-01 1 11896120 11896120 C T CLCN6 Silent p.H630H 0.07 TCGA-86-A4JF-01 1 12368513 12368513 C T VPS13D Silent p.C2155C 0.08 TCGA-86-A4JF-01 1 12820845 12820845 G A C1orf158 Silent p.P182P 0.08 TCGA-86-A4JF-01 1 13695704 13695704 T C PRAMEF19 Missense_Mutation p.N421D 0.17 benign(0.002) TCGA-86-A4JF-01 1 142713685 142713685 T A RP11-417J8.6 RNA 0.08 TCGA-86-A4JF-01 1 144814685 144814685 A G NBPF9 Missense_Mutation p.Y107C 0.27 tolerated(0.1) probably_damaging(0.993) TCGA-86-A4JF-01 1 144877271 144877271 C A PDE4DIP Silent p.G1472G 0.12 TCGA-86-A4JF-01 1 144952193 144952193 G A PDE4DIP Intron 0.07 TCGA-86-A4JF-01 1 145533871 145533871 T A ITGA10 Missense_Mutation p.V506E 0.14 deleterious(0) probably_damaging(0.99) TCGA-86-A4JF-01 1 145601802 145601802 G A POLR3C Silent p.H243H 0.07 TCGA-86-A4JF-01 1 146680260 146680260 C A FMO5 Intron 0.23 TCGA-86-A4JF-01 1 147092052 147092053 - C BCL9 Frame_Shift_Ins p.Q700Tfs*9 0.09 TCGA-86-A4JF-01 1 149882396 149882396 C T SV2A Missense_Mutation p.A313T 0.11 tolerated(0.06) benign(0.05) TCGA-86-A4JF-01 1 150053436 150053436 G T VPS45 Missense_Mutation p.A234S 0.07 deleterious(0.01) probably_damaging(0.913) TCGA-86-A4JF-01 1 150485940 150485940 A G ECM1 Silent p.E567E 0.27 TCGA-86-A4JF-01 1 151261667 151261667 C T ZNF687 Silent p.C797C 0.05 TCGA-86-A4JF-01 1 151263277 151263277 C T ZNF687 Silent p.G1102G 0.15 TCGA-86-A4JF-01 1 152187076 152187076 G T HRNR Missense_Mutation p.H2343Q 0.06 unknown(0) TCGA-86-A4JF-01 1 152281516 152281516 T G FLG Missense_Mutation p.Q1949P 0.22 benign(0.153) TCGA-86-A4JF-01 1 152282654 152282654 T C FLG Missense_Mutation p.S1570G 0.14 benign(0.418) TCGA-86-A4JF-01 1 152284619 152284619 C T FLG Missense_Mutation p.E915K 0.12 probably_damaging(0.965) TCGA-86-A4JF-01 1 152748981 152748981 G A LCE1F Missense_Mutation p.S45N 0.09 deleterious_low_confidence(0.05) unknown(0) TCGA-86-A4JF-01 1 152759794 152759794 C A LCE1E Missense_Mutation p.Q7K 0.15 deleterious_low_confidence(0) unknown(0) TCGA-86-A4JF-01 1 152777925 152777925 G T LCE1C Nonsense_Mutation p.C10* 0.14 TCGA-86-A4JF-01 1 152975613 152975613 G T SPRR3 Missense_Mutation p.E39D 0.28 tolerated(0.14) benign(0.286) TCGA-86-A4JF-01 1 153346431 153346431 T A S100A12 Nonsense_Mutation p.K51* 0.16 TCGA-86-A4JF-01 1 153636604 153636604 A G ILF2 Missense_Mutation p.V220A 0.25 deleterious(0) benign(0.098) TCGA-86-A4JF-01 1 153742311 153742311 A G INTS3 Missense_Mutation p.N794D 0.16 tolerated(0.51) possibly_damaging(0.465) TCGA-86-A4JF-01 1 153749141 153749141 A G SLC27A3 Missense_Mutation p.Y319C 0.17 tolerated(0.18) benign(0.043) TCGA-86-A4JF-01 1 154931745 154931745 A C PYGO2 Missense_Mutation p.F244C 0.08 tolerated(0.18) possibly_damaging(0.869) TCGA-86-A4JF-01 1 154960557 154960557 C T FLAD1 Intron 0.06 TCGA-86-A4JF-01 1 155013003 155013003 C T DCST1 Missense_Mutation p.A145V 0.19 tolerated(0.58) benign(0.006) TCGA-86-A4JF-01 1 155177614 155177614 G C THBS3 Missense_Mutation p.F18L 0.06 tolerated(0.64) benign(0) TCGA-86-A4JF-01 1 155231903 155231903 G A SCAMP3 Missense_Mutation p.P14S 0.12 deleterious(0.05) benign(0.004) TCGA-86-A4JF-01 1 155236526 155236526 C T CLK2 Missense_Mutation p.V277I 0.06 tolerated(0.14) benign(0.017) TCGA-86-A4JF-01 1 155870379 155870379 G A RIT1 Nonsense_Mutation p.R171* 0.21 TCGA-86-A4JF-01 1 156524033 156524033 G A IQGAP3 Missense_Mutation p.A481V 0.12 tolerated(0.49) benign(0.015) TCGA-86-A4JF-01 1 156846281 156846281 C T NTRK1 Silent p.R574R 0.26 TCGA-86-A4JF-01 1 157014344 157014344 A - ARHGEF11 5'UTR 0.44 TCGA-86-A4JF-01 1 157508987 157508987 C T FCRL5 Missense_Mutation p.G431R 0.20 tolerated(0.65) benign(0.058) TCGA-86-A4JF-01 1 157548318 157548318 C A FCRL4 Nonsense_Mutation p.G459* 0.05 TCGA-86-A4JF-01 1 157660238 157660238 G A FCRL3 Silent p.S499S 0.06 TCGA-86-A4JF-01 1 157668356 157668356 T A FCRL3 Missense_Mutation p.K39I 0.22 tolerated(0.15) benign(0.063) TCGA-86-A4JF-01 1 157737239 157737239 T C FCRL2 Missense_Mutation p.D315G 0.16 tolerated(0.06) possibly_damaging(0.495) TCGA-86-A4JF-01 1 157771252 157771252 T C FCRL1 Missense_Mutation p.I334M 0.18 tolerated(0.06) possibly_damaging(0.605) TCGA-86-A4JF-01 1 158059361 158059361 C T KIRREL Missense_Mutation p.R372W 0.07 deleterious(0) probably_damaging(0.925) TCGA-86-A4JF-01 1 158592942 158592942 C A SPTA1 Missense_Mutation p.R1984I 0.27 deleterious(0.01) possibly_damaging(0.882) TCGA-86-A4JF-01 1 158622424 158622424 G T SPTA1 Silent p.R1070R 0.08 TCGA-86-A4JF-01 1 159163772 159163772 G C CADM3 Silent p.V245V 0.07 TCGA-86-A4JF-01 1 159176249 159176249 C A DARC 3'UTR 0.12 TCGA-86-A4JF-01 1 160062768 160062768 G A IGSF8 Missense_Mutation p.R420C 0.22 deleterious(0.05) probably_damaging(0.997) TCGA-86-A4JF-01 1 160385611 160385611 C A VANGL2 5'UTR 0.11 TCGA-86-A4JF-01 1 160654839 160654839 T A CD48 Nonsense_Mutation p.K75* 0.11 TCGA-86-A4JF-01 1 160654849 160654849 G A CD48 Silent p.S71S 0.12 TCGA-86-A4JF-01 1 160654913 160654913 G A CD48 Missense_Mutation p.P50L 0.18 tolerated(0.33) benign(0.123) TCGA-86-A4JF-01 1 161012387 161012387 G A USF1 Silent p.D44D 0.12 TCGA-86-A4JF-01 1 161140288 161140288 C - PPOX Frame_Shift_Del p.P361Lfs*5 0.18 TCGA-86-A4JF-01 1 161683278 161683278 A G FCRLA 3'UTR 0.21 TCGA-86-A4JF-01 1 161816294 161816294 A C ATF6 Silent p.R415R 0.15 TCGA-86-A4JF-01 1 162535807 162535807 C G UAP1 5'UTR 0.14 TCGA-86-A4JF-01 1 16260194 16260194 G - SPEN Frame_Shift_Del p.I2489Sfs*10 0.11 TCGA-86-A4JF-01 1 16268580 16268580 C A ZBTB17 Missense_Mutation p.G766W 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-86-A4JF-01 1 166818882 166818882 G A POGK Missense_Mutation p.E356K 0.14 tolerated(0.58) benign(0.017) TCGA-86-A4JF-01 1 167088549 167088549 G A DUSP27 Silent p.A167A 0.10 TCGA-86-A4JF-01 1 167779068 167779068 C G ADCY10 Missense_Mutation p.W1560C 0.11 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 1 168550307 168550307 G T XCL1 Missense_Mutation p.G65V 0.17 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 1 169529810 169529810 G - F5 Frame_Shift_Del p.L190Cfs*9 0.11 TCGA-86-A4JF-01 1 16957464 16957464 G A CROCCP2 RNA 0.25 TCGA-86-A4JF-01 1 169698718 169698718 T A SELE Missense_Mutation p.D271V 0.18 tolerated(0.32) benign(0.043) TCGA-86-A4JF-01 1 169698744 169698744 G A SELE Silent p.F262F 0.20 TCGA-86-A4JF-01 1 171510918 171510918 G T PRRC2C Missense_Mutation p.R1436L 0.17 unknown(0) TCGA-86-A4JF-01 1 171765812 171765812 G T METTL13 Missense_Mutation p.L672F 0.14 deleterious(0.01) probably_damaging(0.917) TCGA-86-A4JF-01 1 172579364 172579364 A G SUCO Missense_Mutation p.T1244A 0.10 tolerated(0.08) benign(0.02) TCGA-86-A4JF-01 1 172635021 172635021 G T FASLG Missense_Mutation p.Q237H 0.07 tolerated(0.13) benign(0.026) TCGA-86-A4JF-01 1 173446606 173446606 C T PRDX6 Missense_Mutation p.R24C 0.23 tolerated(0.1) benign(0.003) TCGA-86-A4JF-01 1 173474415 173474415 G T SLC9C2 Missense_Mutation p.T1094N 0.16 tolerated(0.51) benign(0.081) TCGA-86-A4JF-01 1 173567077 173567077 A C SLC9C2 Missense_Mutation p.V108G 0.17 deleterious(0) probably_damaging(0.98) TCGA-86-A4JF-01 1 174363163 174363163 G A RABGAP1L Silent p.G530G 0.07 TCGA-86-A4JF-01 1 175348753 175348753 C A TNR Missense_Mutation p.G633V 0.18 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 1 17594366 17594366 G A PADI3 Silent p.T187T 0.22 TCGA-86-A4JF-01 1 17597576 17597576 C G PADI3 Missense_Mutation p.T317R 0.15 tolerated(0.26) benign(0.102) TCGA-86-A4JF-01 1 176564105 176564105 C A PAPPA2 Silent p.V455V 0.17 TCGA-86-A4JF-01 1 176661389 176661389 C T PAPPA2 Silent p.I853I 0.10 TCGA-86-A4JF-01 1 176738826 176738826 G A PAPPA2 Silent p.P1469P 0.13 TCGA-86-A4JF-01 1 177001715 177001715 C A ASTN1 Missense_Mutation p.D248Y 0.22 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-86-A4JF-01 1 177250524 177250525 - T BRINP2 Frame_Shift_Ins p.D739* 0.13 TCGA-86-A4JF-01 1 180163519 180163519 G A QSOX1 Missense_Mutation p.R487H 0.14 deleterious(0) probably_damaging(0.997) TCGA-86-A4JF-01 1 180971836 180971836 C T STX6 Missense_Mutation p.S69N 0.13 tolerated(0.7) benign(0.001) TCGA-86-A4JF-01 1 181680155 181680155 A G CACNA1E Missense_Mutation p.Q374R 0.06 deleterious(0) benign(0.069) TCGA-86-A4JF-01 1 181706743 181706743 G A CACNA1E Missense_Mutation p.A1169T 0.04 deleterious(0.04) possibly_damaging(0.835) TCGA-86-A4JF-01 1 181727910 181727910 G A CACNA1E Missense_Mutation p.C1504Y 0.08 tolerated(0.83) benign(0.384) TCGA-86-A4JF-01 1 181765963 181765963 G T CACNA1E Missense_Mutation p.S2123I 0.18 deleterious(0) probably_damaging(0.944) TCGA-86-A4JF-01 1 182823294 182823294 G T DHX9 Missense_Mutation p.V203L 0.26 tolerated(0.12) benign(0.026) TCGA-86-A4JF-01 1 185175791 185175791 A T SWT1 Missense_Mutation p.H623L 0.19 deleterious(0.01) possibly_damaging(0.649) TCGA-86-A4JF-01 1 185976347 185976347 G A HMCN1 Silent p.G1521G 0.10 TCGA-86-A4JF-01 1 186276016 186276016 G A PRG4 Missense_Mutation p.A389T 0.11 unknown(0) TCGA-86-A4JF-01 1 186304663 186304663 T C TPR Missense_Mutation p.Q1573R 0.10 benign(0.069) TCGA-86-A4JF-01 1 186313198 186313198 G A TPR Missense_Mutation p.R1148C 0.10 possibly_damaging(0.898) TCGA-86-A4JF-01 1 186908223 186908223 G A PLA2G4A Missense_Mutation p.S260N 0.11 tolerated(0.21) benign(0.348) TCGA-86-A4JF-01 1 19166482 19166482 C T TAS1R2 Missense_Mutation p.D711N 0.21 tolerated(0.34) benign(0.393) TCGA-86-A4JF-01 1 19166980 19166980 A G TAS1R2 Missense_Mutation p.Y545H 0.08 tolerated(1) benign(0) TCGA-86-A4JF-01 1 192778313 192778313 T C RGS2 Splice_Site p.X37_splice 0.10 TCGA-86-A4JF-01 1 196645129 196645129 C T CFH Silent p.L121L 0.15 TCGA-86-A4JF-01 1 196762506 196762506 A C CFHR3 Missense_Mutation p.S286R 0.14 tolerated(0.53) benign(0.007) TCGA-86-A4JF-01 1 196883693 196883693 G A CFHR4 Missense_Mutation p.D416N 0.23 deleterious(0.01) possibly_damaging(0.539) TCGA-86-A4JF-01 1 197070101 197070102 - T ASPM Frame_Shift_Ins p.N2760Kfs*12 0.15 TCGA-86-A4JF-01 1 197070641 197070641 T C ASPM Silent p.T2580T 0.16 TCGA-86-A4JF-01 1 197890513 197890513 G A LHX9 Missense_Mutation p.V153I 0.22 tolerated(0.06) possibly_damaging(0.773) TCGA-86-A4JF-01 1 200882795 200882795 G T C1orf106 3'UTR 0.13 TCGA-86-A4JF-01 1 201351788 201351788 T C LAD1 Missense_Mutation p.D489G 0.33 tolerated(0.31) benign(0.081) TCGA-86-A4JF-01 1 201383686 201383686 G T TNNI1 Missense_Mutation p.P50H 0.18 deleterious(0) possibly_damaging(0.9) TCGA-86-A4JF-01 1 202910787 202910787 C A ADIPOR1 Missense_Mutation p.A348S 0.12 deleterious(0) probably_damaging(0.96) TCGA-86-A4JF-01 1 203138416 203138416 T A MYBPH Missense_Mutation p.T399S 0.16 deleterious(0.01) possibly_damaging(0.908) TCGA-86-A4JF-01 1 203472809 203472809 C G OPTC Nonsense_Mutation p.Y320* 0.12 TCGA-86-A4JF-01 1 203741240 203741240 C T LAX1 Missense_Mutation p.L119F 0.18 deleterious(0) probably_damaging(0.994) TCGA-86-A4JF-01 1 203809449 203809449 C T ZC3H11A Missense_Mutation p.S330F 0.07 deleterious(0) probably_damaging(0.997) TCGA-86-A4JF-01 1 205132094 205132094 G C DSTYK Nonsense_Mutation p.S533* 0.10 TCGA-86-A4JF-01 1 205883992 205883992 C T SLC26A9 3'UTR 0.15 TCGA-86-A4JF-01 1 205884287 205884287 C - SLC26A9 Frame_Shift_Del p.C800Afs*10 0.10 TCGA-86-A4JF-01 1 206666659 206666659 C A IKBKE Missense_Mutation p.P665T 0.10 tolerated(0.13) benign(0.193) TCGA-86-A4JF-01 1 206905807 206905807 T C MAPKAPK2 Intron 0.22 TCGA-86-A4JF-01 1 207245718 207245718 C T PFKFB2 3'UTR 0.19 TCGA-86-A4JF-01 1 207314564 207314564 C T C4BPA Nonsense_Mutation p.Q463* 0.05 TCGA-86-A4JF-01 1 209880165 209880165 G A HSD11B1 Missense_Mutation p.G111R 0.08 deleterious(0.03) probably_damaging(0.994) TCGA-86-A4JF-01 1 209961960 209961960 G A IRF6 Silent p.Y403Y 0.11 TCGA-86-A4JF-01 1 21133762 21133762 A T EIF4G3 3'UTR 0.10 TCGA-86-A4JF-01 1 211545756 211545756 C T TRAF5 Silent p.Y462Y 0.29 TCGA-86-A4JF-01 1 212532041 212532041 C T PPP2R5A Silent p.L414L 0.09 TCGA-86-A4JF-01 1 213277840 213277840 G A RPS6KC1 Missense_Mutation p.E103K 0.17 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 1 214557490 214557491 - T PTPN14 Frame_Shift_Ins p.Y570Ifs*131 0.09 TCGA-86-A4JF-01 1 216040427 216040427 C A USH2A Missense_Mutation p.G2923C 0.24 probably_damaging(1) TCGA-86-A4JF-01 1 216496967 216496967 A T USH2A Missense_Mutation p.Y467N 0.13 probably_damaging(0.954) TCGA-86-A4JF-01 1 218458671 218458671 G T RRP15 Missense_Mutation p.A5S 0.24 deleterious_low_confidence(0.01) benign(0.082) TCGA-86-A4JF-01 1 220153472 220153472 T C EPRS Silent p.T1222T 0.21 TCGA-86-A4JF-01 1 220203798 220203798 C A EPRS Missense_Mutation p.G185W 0.23 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 1 220236296 220236296 C A BPNT1 Missense_Mutation p.A159S 0.16 tolerated(0.78) benign(0.038) TCGA-86-A4JF-01 1 221058024 221058024 A T HLX Missense_Mutation p.Q482L 0.46 tolerated_low_confidence(0.07) benign(0.015) TCGA-86-A4JF-01 1 222753124 222753124 T C TAF1A Missense_Mutation p.I128V 0.15 tolerated(0.51) benign(0.008) TCGA-86-A4JF-01 1 227149080 227149080 C T ADCK3 Intron 0.17 TCGA-86-A4JF-01 1 227149098 227149098 A T ADCK3 Silent p.I4I 0.18 TCGA-86-A4JF-01 1 228003829 228003829 G A PRSS38 Missense_Mutation p.G63S 0.14 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 1 228345796 228345796 G T GJC2 Missense_Mutation p.A113S 0.24 tolerated(0.53) benign(0.082) TCGA-86-A4JF-01 1 228464714 228464714 C G OBSCN Missense_Mutation p.R2566G 0.27 probably_damaging(0.999) TCGA-86-A4JF-01 1 228469872 228469872 G A OBSCN Silent p.R3241R 0.30 TCGA-86-A4JF-01 1 228503570 228503570 G C OBSCN Silent p.G5302G 0.19 TCGA-86-A4JF-01 1 22852927 22852927 G A ZBTB40 3'UTR 0.08 TCGA-86-A4JF-01 1 231060717 231060717 T A TTC13 Missense_Mutation p.M531L 0.13 tolerated(0.13) probably_damaging(0.972) TCGA-86-A4JF-01 1 231124163 231124163 T G ARV1 Missense_Mutation p.I91S 0.32 deleterious(0) possibly_damaging(0.882) TCGA-86-A4JF-01 1 231360240 231360240 G A C1orf131 Intron 0.15 TCGA-86-A4JF-01 1 23239993 23239993 A G EPHB2 Missense_Mutation p.Q965R 0.08 deleterious(0.01) probably_damaging(0.984) TCGA-86-A4JF-01 1 232551291 232551291 C T SIPA1L2 Missense_Mutation p.A1571T 0.14 deleterious(0.02) possibly_damaging(0.819) TCGA-86-A4JF-01 1 233518218 233518218 C T MLK4 Nonsense_Mutation p.Q958* 0.06 TCGA-86-A4JF-01 1 233750036 233750038 TCT - KCNK1 In_Frame_Del p.F41del 0.14 TCGA-86-A4JF-01 1 235613535 235613535 A T B3GALNT2 Missense_Mutation p.C497S 0.29 deleterious(0) possibly_damaging(0.766) TCGA-86-A4JF-01 1 235826344 235826344 T C LYST Missense_Mutation p.T3768A 0.07 tolerated(0.32) probably_damaging(0.978) TCGA-86-A4JF-01 1 237711757 237711757 C G RYR2 Missense_Mutation p.P978R 0.34 probably_damaging(0.989) TCGA-86-A4JF-01 1 237948050 237948050 G A RYR2 Silent p.G4346G 0.21 TCGA-86-A4JF-01 1 238090894 238090894 C A RP11-193H5.1 RNA 0.25 TCGA-86-A4JF-01 1 23848384 23848384 C A E2F2 Missense_Mutation p.V175L 0.20 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 1 240072501 240072501 C A CHRM3 Missense_Mutation p.R584S 0.15 tolerated(0.07) benign(0.023) TCGA-86-A4JF-01 1 240370506 240370506 C T FMN2 Silent p.L798L 0.09 TCGA-86-A4JF-01 1 241671987 241671987 A G FH Silent p.L218L 0.09 TCGA-86-A4JF-01 1 243328759 243328759 G A CEP170 Nonsense_Mutation p.R835* 0.14 TCGA-86-A4JF-01 1 243329202 243329202 T C CEP170 Missense_Mutation p.Y687C 0.14 tolerated(0.18) benign(0.195) TCGA-86-A4JF-01 1 247263869 247263869 C T ZNF669 Missense_Mutation p.R401H 0.14 tolerated(0.54) benign(0.008) TCGA-86-A4JF-01 1 247320033 247320033 T C ZNF124 Silent p.K235K 0.07 TCGA-86-A4JF-01 1 247463920 247463920 G A ZNF496 Silent p.C555C 0.16 TCGA-86-A4JF-01 1 247492575 247492575 C T ZNF496 Silent p.V102V 0.13 TCGA-86-A4JF-01 1 247587853 247587853 A T NLRP3 Missense_Mutation p.I370F 0.28 deleterious(0) probably_damaging(0.918) TCGA-86-A4JF-01 1 247588106 247588106 G - NLRP3 Frame_Shift_Del p.G455Efs*49 0.10 TCGA-86-A4JF-01 1 247588540 247588540 A C NLRP3 Missense_Mutation p.K599Q 0.08 deleterious(0.02) possibly_damaging(0.641) TCGA-86-A4JF-01 1 247769102 247769102 G A OR2G3 Missense_Mutation p.C72Y 0.12 deleterious(0) probably_damaging(0.947) TCGA-86-A4JF-01 1 248039411 248039411 G A TRIM58 Missense_Mutation p.G361R 0.28 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 1 248436164 248436164 C T OR2T33 Missense_Mutation p.R318K 0.14 tolerated_low_confidence(1) benign(0) TCGA-86-A4JF-01 1 248685701 248685701 T G OR2G6 Missense_Mutation p.Y252D 0.12 deleterious(0) probably_damaging(0.998) TCGA-86-A4JF-01 1 249110741 249110741 C G SH3BP5L Missense_Mutation p.A123P 0.07 deleterious(0.01) benign(0.067) TCGA-86-A4JF-01 1 3327948 3327948 G T PRDM16 Missense_Mutation p.C396F 0.15 deleterious(0) probably_damaging(0.981) TCGA-86-A4JF-01 1 33741724 33741724 A G ZNF362 Missense_Mutation p.N21S 0.05 tolerated(0.94) benign(0.045) TCGA-86-A4JF-01 1 35321260 35321260 T C SMIM12 3'UTR 0.20 TCGA-86-A4JF-01 1 35370454 35370454 C T DLGAP3 Silent p.V177V 0.08 TCGA-86-A4JF-01 1 35653600 35653600 A G SFPQ Missense_Mutation p.Y597H 0.13 tolerated(0.05) possibly_damaging(0.86) TCGA-86-A4JF-01 1 35921730 35921730 T C KIAA0319L Missense_Mutation p.T514A 0.22 deleterious(0) possibly_damaging(0.904) TCGA-86-A4JF-01 1 36026477 36026477 A G NCDN Missense_Mutation p.Q242R 0.17 tolerated(0.2) benign(0.003) TCGA-86-A4JF-01 1 36208792 36208792 A T CLSPN Missense_Mutation p.D1031E 0.07 tolerated(0.78) benign(0.076) TCGA-86-A4JF-01 1 36316620 36316620 G A AGO4 Missense_Mutation p.A815T 0.22 deleterious(0) probably_damaging(0.979) TCGA-86-A4JF-01 1 36788029 36788029 G A EVA1B Missense_Mutation p.A122V 0.17 deleterious(0) probably_damaging(0.994) TCGA-86-A4JF-01 1 37945985 37945985 C T ZC3H12A Missense_Mutation p.P180S 0.10 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 1 42880404 42880404 C T RIMKLA Missense_Mutation p.A312V 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.65) TCGA-86-A4JF-01 1 43213438 43213438 C G LEPRE1 Missense_Mutation p.G624R 0.11 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 1 43317473 43317473 G C ZNF691 Missense_Mutation p.D313H 0.12 tolerated_low_confidence(0.17) possibly_damaging(0.635) TCGA-86-A4JF-01 1 43815036 43815036 G T MPL Intron 0.07 TCGA-86-A4JF-01 1 43891222 43891222 T C SZT2 Missense_Mutation p.V908A 0.05 deleterious(0.04) possibly_damaging(0.889) TCGA-86-A4JF-01 1 45221909 45221909 G - KIF2C Frame_Shift_Del 0.17 TCGA-86-A4JF-01 1 45268774 45268774 C G PLK3 Silent p.P299P 0.07 TCGA-86-A4JF-01 1 47101332 47101332 G A ATPAF1 3'UTR 0.14 TCGA-86-A4JF-01 1 50666682 50666682 C T ELAVL4 Silent p.N328N 0.10 TCGA-86-A4JF-01 1 50885183 50885183 G A DMRTA2 Silent p.G261G 0.18 TCGA-86-A4JF-01 1 52854939 52854939 G A ORC1 Silent p.I379I 0.20 TCGA-86-A4JF-01 1 53544496 53544496 G T PODN Silent p.S486S 0.11 TCGA-86-A4JF-01 1 54606942 54606942 A G CDCP2 Missense_Mutation p.C198R 0.14 deleterious(0) probably_damaging(0.996) TCGA-86-A4JF-01 1 57537273 57537273 G T DAB1 Silent p.L160L 0.17 TCGA-86-A4JF-01 1 5947485 5947485 G A NPHP4 Silent p.H782H 0.12 TCGA-86-A4JF-01 1 62672644 62672644 T A L1TD1 Missense_Mutation p.M115K 0.12 tolerated(0.93) unknown(0) TCGA-86-A4JF-01 1 6314816 6314816 C A GPR153 Silent p.A50A 0.27 TCGA-86-A4JF-01 1 66102024 66102024 C G LEPR Missense_Mutation p.L942V 0.13 tolerated(0.05) benign(0.049) TCGA-86-A4JF-01 1 68659685 68659685 A G WLS Missense_Mutation p.L109P 0.13 deleterious(0) probably_damaging(0.994) TCGA-86-A4JF-01 1 70541765 70541765 C A LRRC7 Silent p.G1374G 0.22 TCGA-86-A4JF-01 1 76198771 76198771 C T ACADM Intron 0.10 TCGA-86-A4JF-01 1 76251903 76251903 C T RABGGTB 5'UTR 0.27 TCGA-86-A4JF-01 1 79116148 79116148 T A IFI44 Missense_Mutation p.W90R 0.05 tolerated(0.32) benign(0) TCGA-86-A4JF-01 1 82450947 82450947 G C LPHN2 Missense_Mutation p.R1122P 0.20 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 1 86591055 86591055 C T COL24A1 Missense_Mutation p.V322I 0.06 tolerated(0.23) benign(0.003) TCGA-86-A4JF-01 1 8925448 8925448 G T ENO1 Missense_Mutation p.S254Y 0.15 deleterious_low_confidence(0) benign(0.358) TCGA-86-A4JF-01 1 89449451 89449451 T C RBMXL1 Missense_Mutation p.N20S 0.08 tolerated(0.14) benign(0.004) TCGA-86-A4JF-01 1 92459756 92459756 A G BRDT Silent p.L744L 0.08 TCGA-86-A4JF-01 1 94458777 94458777 C T ABCA4 3'UTR 0.13 TCGA-86-A4JF-01 1 979057 979057 C T AGRN Silent p.H581H 0.14 TCGA-86-A4JF-01 20 10644631 10644631 T C JAG1 Missense_Mutation p.D140G 0.06 deleterious(0) probably_damaging(0.998) TCGA-86-A4JF-01 20 1552625 1552625 T C SIRPB1 Silent p.T164T 0.20 TCGA-86-A4JF-01 20 20144722 20144722 C A C20orf26 Missense_Mutation p.T352N 0.15 tolerated(0.5) benign(0.002) TCGA-86-A4JF-01 20 24964616 24964616 C A APMAP Missense_Mutation p.M45I 0.22 tolerated(0.54) benign(0.001) TCGA-86-A4JF-01 20 2775219 2775219 T C CPXM1 Missense_Mutation p.I643V 0.07 tolerated(0.1) possibly_damaging(0.516) TCGA-86-A4JF-01 20 30689156 30689156 G T HCK Missense_Mutation p.R472L 0.15 deleterious(0.01) benign(0.193) TCGA-86-A4JF-01 20 3649434 3649434 T C ADAM33 3'UTR 0.21 TCGA-86-A4JF-01 20 39987444 39987444 T C LPIN3 Missense_Mutation p.Y832H 0.16 deleterious(0) possibly_damaging(0.493) TCGA-86-A4JF-01 20 40710608 40710608 C G PTPRT Missense_Mutation p.E1396Q 0.06 tolerated(0.06) probably_damaging(0.996) TCGA-86-A4JF-01 20 42159056 42159056 A G L3MBTL1 Missense_Mutation p.K375E 0.21 deleterious(0) possibly_damaging(0.752) TCGA-86-A4JF-01 20 4229214 4229214 T C ADRA1D Missense_Mutation p.T131A 0.13 deleterious(0) probably_damaging(0.987) TCGA-86-A4JF-01 20 43922442 43922442 C T MATN4 Missense_Mutation p.E571K 0.28 possibly_damaging(0.575) TCGA-86-A4JF-01 20 43929583 43929583 T C MATN4 Missense_Mutation p.Y319C 0.26 probably_damaging(0.947) TCGA-86-A4JF-01 20 44048000 44048001 - C PIGT Frame_Shift_Ins p.W189Lfs*8 0.14 TCGA-86-A4JF-01 20 44598229 44598229 G A ZNF335 Silent p.G101G 0.13 TCGA-86-A4JF-01 20 45224801 45224801 G C SLC13A3 Silent p.L263L 0.08 TCGA-86-A4JF-01 20 467059 467059 C A CSNK2A1 Missense_Mutation p.G341W 0.16 deleterious_low_confidence(0) possibly_damaging(0.497) TCGA-86-A4JF-01 20 47297795 47297795 C A PREX1 Missense_Mutation p.L471F 0.18 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 20 47711371 47711371 T A CSE1L Nonsense_Mutation p.Y899* 0.16 TCGA-86-A4JF-01 20 48098895 48098895 C T KCNB1 Silent p.A41A 0.27 TCGA-86-A4JF-01 20 48252693 48252693 C T B4GALT5 3'UTR 0.21 TCGA-86-A4JF-01 20 4880360 4880360 T A SLC23A2 Splice_Site p.X109_splice 0.20 TCGA-86-A4JF-01 20 50241769 50241769 G A ATP9A Missense_Mutation p.R660W 0.18 deleterious(0) probably_damaging(0.987) TCGA-86-A4JF-01 20 50407943 50407943 T C SALL4 Missense_Mutation p.K360R 0.06 deleterious(0) probably_damaging(0.993) TCGA-86-A4JF-01 20 50769313 50769313 G A ZFP64 Missense_Mutation p.T473M 0.19 deleterious(0.02) benign(0.095) TCGA-86-A4JF-01 20 52775600 52775600 C G CYP24A1 Missense_Mutation p.K351N 0.28 tolerated(0.07) benign(0.11) TCGA-86-A4JF-01 20 55027404 55027404 C A CASS4 Missense_Mutation p.P391Q 0.21 tolerated(0.3) benign(0.089) TCGA-86-A4JF-01 20 55033415 55033415 C T CASS4 Missense_Mutation p.P658L 0.11 deleterious(0.04) benign(0.029) TCGA-86-A4JF-01 20 56090746 56090746 G A CTCFL Intron 0.20 TCGA-86-A4JF-01 20 57288530 57288530 C T NPEPL1 Silent p.G352G 0.25 TCGA-86-A4JF-01 20 57767445 57767445 C T ZNF831 Silent p.R457R 0.08 TCGA-86-A4JF-01 20 57767782 57767782 C T ZNF831 Silent p.L570L 0.23 TCGA-86-A4JF-01 20 58562572 58562572 G A CDH26 Missense_Mutation p.R301Q 0.18 tolerated(0.55) benign(0.018) TCGA-86-A4JF-01 20 61288011 61288011 G A SLCO4A1 Missense_Mutation p.A69T 0.19 tolerated(0.75) benign(0) TCGA-86-A4JF-01 20 61511822 61511822 G A DIDO1 Missense_Mutation p.S1829F 0.08 possibly_damaging(0.851) TCGA-86-A4JF-01 20 61828010 61828010 A G YTHDF1 3'UTR 0.14 TCGA-86-A4JF-01 20 61870752 61870752 T C BIRC7 Missense_Mutation p.L231P 0.22 tolerated(0.3) benign(0.001) TCGA-86-A4JF-01 20 61981721 61981721 A C CHRNA4 Missense_Mutation p.F348V 0.20 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 20 62065183 62065183 G A KCNQ2 Missense_Mutation p.T366M 0.08 deleterious(0.03) probably_damaging(0.987) TCGA-86-A4JF-01 20 62172589 62172589 C T SRMS Missense_Mutation p.V414I 0.15 tolerated(1) benign(0.017) TCGA-86-A4JF-01 20 62197486 62197486 C T HELZ2 Missense_Mutation p.V897M 0.36 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 20 62198577 62198577 C T HELZ2 Missense_Mutation p.A712T 0.23 deleterious(0) probably_damaging(0.995) TCGA-86-A4JF-01 20 62595880 62595880 C T ZNF512B Silent p.A408A 0.20 TCGA-86-A4JF-01 20 62680649 62680649 C A SOX18 Missense_Mutation p.R74L 0.08 tolerated(0.25) benign(0.25) TCGA-86-A4JF-01 20 9417703 9417703 G A PLCB4 Missense_Mutation p.A878T 0.13 tolerated(0.65) benign(0.006) TCGA-86-A4JF-01 21 10971326 10971326 C T TPTE Missense_Mutation p.A11T 0.10 tolerated_low_confidence(1) benign(0.005) TCGA-86-A4JF-01 21 19704415 19704415 G T TMPRSS15 Missense_Mutation p.P547H 0.19 deleterious(0.01) probably_damaging(0.971) TCGA-86-A4JF-01 21 27096901 27096901 T C ATP5J 3'UTR 0.13 TCGA-86-A4JF-01 21 30701833 30701833 G A BACH1 Missense_Mutation p.R532Q 0.22 tolerated(0.27) possibly_damaging(0.691) TCGA-86-A4JF-01 21 30968896 30968896 T - GRIK1 Intron 0.16 TCGA-86-A4JF-01 21 32598165 32598165 G A TIAM1 Silent p.L562L 0.11 TCGA-86-A4JF-01 21 34805028 34805028 T C IFNGR2 Silent p.T243T 0.07 TCGA-86-A4JF-01 21 38884219 38884219 T C DYRK1A Silent p.R559R 0.12 TCGA-86-A4JF-01 21 41385056 41385056 C A DSCAM Missense_Mutation p.A1982S 0.22 tolerated_low_confidence(0.54) benign(0.011) TCGA-86-A4JF-01 21 43277313 43277313 C A PRDM15 Missense_Mutation p.W452L 0.16 tolerated_low_confidence(0.65) benign(0.006) TCGA-86-A4JF-01 21 44839845 44839845 T C SIK1 Missense_Mutation p.Y338C 0.39 deleterious(0) probably_damaging(0.998) TCGA-86-A4JF-01 21 45825109 45825109 G A TRPM2 Missense_Mutation p.A875T 0.14 tolerated(0.16) probably_damaging(0.955) TCGA-86-A4JF-01 21 46067128 46067128 G A KRTAP10-11 Silent p.V251V 0.08 TCGA-86-A4JF-01 21 46117834 46117834 T A KRTAP10-12 Missense_Mutation p.C240S 0.07 deleterious(0.01) unknown(0) TCGA-86-A4JF-01 21 46689866 46689866 C A POFUT2 Missense_Mutation p.W300C 0.07 deleterious(0.03) probably_damaging(0.976) TCGA-86-A4JF-01 21 47558810 47558810 G A FTCD Missense_Mutation p.P430S 0.29 tolerated(0.16) benign(0.006) TCGA-86-A4JF-01 21 47801718 47801718 C T PCNT Missense_Mutation p.S1092F 0.11 benign(0.29) TCGA-86-A4JF-01 21 47987485 47987485 G A DIP2A Missense_Mutation p.G1556S 0.13 tolerated(0.54) probably_damaging(0.987) TCGA-86-A4JF-01 21 48019357 48019357 G A S100B Silent p.D66D 0.08 TCGA-86-A4JF-01 22 18185106 18185106 A G BCL2L13 Missense_Mutation p.Y185C 0.22 tolerated(0.09) probably_damaging(1) TCGA-86-A4JF-01 22 20130522 20130522 C - ZDHHC8 Frame_Shift_Del p.T459Rfs*177 0.20 TCGA-86-A4JF-01 22 20229975 20229975 G A RTN4R Silent p.R227R 0.24 TCGA-86-A4JF-01 22 21385396 21385396 C T SLC7A4 Missense_Mutation p.G236S 0.20 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 22 21989125 21989125 C T CCDC116 Missense_Mutation p.P258L 0.09 tolerated(1) benign(0.001) TCGA-86-A4JF-01 22 23237575 23237575 A T IGLL5 Missense_Mutation p.T116S 0.17 tolerated_low_confidence(0.8) benign(0.001) TCGA-86-A4JF-01 22 23237577 23237577 T G IGLL5 Silent p.T116T 0.17 TCGA-86-A4JF-01 22 23237723 23237723 A C IGLL5 Missense_Mutation p.K165T 0.19 tolerated_low_confidence(0.34) benign(0.012) TCGA-86-A4JF-01 22 24036979 24036979 C T RGL4 Intron 0.17 TCGA-86-A4JF-01 22 24615993 24615993 G A GGT5 Missense_Mutation p.A570V 0.31 tolerated(0.09) benign(0.201) TCGA-86-A4JF-01 22 26688690 26688690 C T SEZ6L Missense_Mutation p.S138F 0.15 deleterious_low_confidence(0.01) benign(0.11) TCGA-86-A4JF-01 22 29940579 29940579 T C THOC5 Missense_Mutation p.Y37C 0.15 deleterious(0) probably_damaging(0.926) TCGA-86-A4JF-01 22 30735012 30735012 A G SF3A1 Silent p.D503D 0.21 TCGA-86-A4JF-01 22 31013398 31013398 C T TCN2 Missense_Mutation p.P341L 0.22 deleterious(0.04) benign(0.001) TCGA-86-A4JF-01 22 31501028 31501028 C T SELM Silent p.A122A 0.10 TCGA-86-A4JF-01 22 32211099 32211099 G A DEPDC5 Missense_Mutation p.D523N 0.08 tolerated(0.19) possibly_damaging(0.796) TCGA-86-A4JF-01 22 32651308 32651308 A G SLC5A4 Silent p.S3S 0.15 TCGA-86-A4JF-01 22 36122729 36122729 T G APOL5 Missense_Mutation p.L205R 0.19 deleterious(0) probably_damaging(0.979) TCGA-86-A4JF-01 22 39832586 39832586 G A TAB1 3'Flank 0.17 TCGA-86-A4JF-01 22 39925563 39925565 CTT - RPS19BP1 In_Frame_Del p.K115del 0.17 TCGA-86-A4JF-01 22 41737143 41737143 C - ZC3H7B Frame_Shift_Del p.S399Rfs*90 0.10 TCGA-86-A4JF-01 22 42393029 42393029 C T SEPT3 3'UTR 0.21 TCGA-86-A4JF-01 22 43715978 43715978 C A SCUBE1 Missense_Mutation p.G105V 0.14 deleterious(0) probably_damaging(0.969) TCGA-86-A4JF-01 22 43715979 43715979 C A SCUBE1 Missense_Mutation p.G105C 0.15 deleterious(0.01) possibly_damaging(0.521) TCGA-86-A4JF-01 22 44368855 44368855 A G SAMM50 Silent p.K178K 0.27 TCGA-86-A4JF-01 22 45121160 45121160 G A PRR5 Silent p.T107T 0.07 TCGA-86-A4JF-01 22 45255677 45255677 A G PRR5-ARHGAP8 Missense_Mutation p.Y525C 0.18 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-86-A4JF-01 22 45598964 45598964 G A KIAA0930 Silent p.H258H 0.08 TCGA-86-A4JF-01 22 47569309 47569309 G A TBC1D22A 3'UTR 0.10 TCGA-86-A4JF-01 22 50197901 50197902 - G BRD1 Frame_Shift_Ins p.L492Pfs*21 0.14 TCGA-86-A4JF-01 22 50720293 50720293 A T PLXNB2 Missense_Mutation p.I1112N 0.11 deleterious(0) probably_damaging(0.987) TCGA-86-A4JF-01 22 50962676 50962676 A G SCO2 Silent p.P55P 0.08 TCGA-86-A4JF-01 2 103068532 103068532 C A IL18RAP Missense_Mutation p.S564Y 0.08 deleterious(0) possibly_damaging(0.73) TCGA-86-A4JF-01 2 103148914 103148914 G A SLC9A4 Missense_Mutation p.A722T 0.16 tolerated(0.24) benign(0) TCGA-86-A4JF-01 2 103299789 103299789 C A SLC9A2 Silent p.T358T 0.21 TCGA-86-A4JF-01 2 107459818 107459818 G A ST6GAL2 Missense_Mutation p.R206W 0.19 probably_damaging(0.991) TCGA-86-A4JF-01 2 108488079 108488079 A G RGPD4 Missense_Mutation p.T1207A 0.12 tolerated(0.36) benign(0.443) TCGA-86-A4JF-01 2 109086638 109086638 G C GCC2 Missense_Mutation p.E285Q 0.04 tolerated(0.4) benign(0.355) TCGA-86-A4JF-01 2 109088412 109088412 A G GCC2 Missense_Mutation p.Q876R 0.20 deleterious(0.05) benign(0.115) TCGA-86-A4JF-01 2 11053164 11053164 C - KCNF1 Frame_Shift_Del p.E206Sfs*50 0.16 TCGA-86-A4JF-01 2 112545896 112545896 A G ANAPC1 Missense_Mutation p.Y1572H 0.10 deleterious(0.01) probably_damaging(0.972) TCGA-86-A4JF-01 2 113832251 113832251 C T IL1F10 Intron 0.09 TCGA-86-A4JF-01 2 114220047 114220047 T C CBWD2 Missense_Mutation p.V213A 0.18 deleterious(0) benign(0.155) TCGA-86-A4JF-01 2 11802128 11802128 C T NTSR2 Missense_Mutation p.R288Q 0.15 tolerated(0.23) benign(0.01) TCGA-86-A4JF-01 2 125504879 125504879 G T CNTNAP5 Silent p.G716G 0.15 TCGA-86-A4JF-01 2 128075800 128075800 C A MAP3K2 Missense_Mutation p.R380I 0.15 deleterious(0.02) benign(0.421) TCGA-86-A4JF-01 2 128384597 128384597 G C MYO7B Missense_Mutation p.Q1395H 0.24 tolerated(0.06) probably_damaging(0.962) TCGA-86-A4JF-01 2 12864893 12864893 C T TRIB2 Intron 0.18 TCGA-86-A4JF-01 2 130902500 130902500 G A CCDC74B Missense_Mutation p.R24C 0.25 deleterious(0) probably_damaging(0.988) TCGA-86-A4JF-01 2 130910640 130910640 C T SMPD4 Silent p.R749R 0.22 TCGA-86-A4JF-01 2 130911857 130911857 C T SMPD4 Missense_Mutation p.R590H 0.23 deleterious(0.01) benign(0.061) TCGA-86-A4JF-01 2 135738405 135738405 G A MAP3K19 Silent p.R1302R 0.10 TCGA-86-A4JF-01 2 135738536 135738536 C G MAP3K19 Missense_Mutation p.E1259Q 0.23 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 2 135738647 135738647 C A MAP3K19 Missense_Mutation p.D1222Y 0.17 deleterious(0) probably_damaging(0.979) TCGA-86-A4JF-01 2 136575322 136575322 A G LCT Silent p.S432S 0.15 TCGA-86-A4JF-01 2 138373784 138373784 C A THSD7B Missense_Mutation p.L1158M 0.17 tolerated(0.11) unknown(0) TCGA-86-A4JF-01 2 145162441 145162441 C T ZEB2 Missense_Mutation p.R185H 0.22 deleterious(0) possibly_damaging(0.862) TCGA-86-A4JF-01 2 149260037 149260037 A T MBD5 Missense_Mutation p.E1432D 0.24 tolerated(0.09) unknown(0) TCGA-86-A4JF-01 2 152417107 152417107 T C NEB Missense_Mutation p.H6438R 0.22 benign(0.004) TCGA-86-A4JF-01 2 152466325 152466325 C T NEB Missense_Mutation p.D4110N 0.06 benign(0.046) TCGA-86-A4JF-01 2 155711378 155711378 C A KCNJ3 Silent p.T353T 0.19 TCGA-86-A4JF-01 2 157185855 157185855 C A NR4A2 Missense_Mutation p.G282C 0.26 deleterious(0) probably_damaging(0.997) TCGA-86-A4JF-01 2 158622628 158622628 A G ACVR1 Silent p.L291L 0.07 TCGA-86-A4JF-01 2 164466421 164466421 G A FIGN Missense_Mutation p.R641W 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-86-A4JF-01 2 165381579 165381580 - A GRB14 Frame_Shift_Ins p.P205Sfs*10 0.12 TCGA-86-A4JF-01 2 166027017 166027017 G T SCN3A Missense_Mutation p.F102L 0.20 deleterious(0) probably_damaging(0.992) TCGA-86-A4JF-01 2 166797546 166797546 G A TTC21B Missense_Mutation p.T234I 0.20 tolerated(0.09) benign(0.027) TCGA-86-A4JF-01 2 167085227 167085227 G A SCN9A Missense_Mutation p.L1383F 0.07 tolerated(0.27) benign(0.003) TCGA-86-A4JF-01 2 168100536 168100536 A T XIRP2 Silent p.L878L 0.23 TCGA-86-A4JF-01 2 168100571 168100571 G T XIRP2 Missense_Mutation p.S890I 0.18 probably_damaging(0.964) TCGA-86-A4JF-01 2 169699556 169699556 T C NOSTRIN Missense_Mutation p.Y187H 0.16 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 2 170677623 170677623 A C METTL5 Missense_Mutation p.F129V 0.13 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 2 171358357 171358357 G T MYO3B Missense_Mutation p.A1118S 0.19 deleterious(0.02) benign(0.211) TCGA-86-A4JF-01 2 176995417 176995417 C - HOXD8 Frame_Shift_Del p.P110Lfs*67 0.26 TCGA-86-A4JF-01 2 178684995 178684995 T C PDE11A Missense_Mutation p.R510G 0.12 deleterious(0) probably_damaging(0.968) TCGA-86-A4JF-01 2 179247976 179247976 C T OSBPL6 Missense_Mutation p.S641L 0.23 deleterious(0.02) benign(0.093) TCGA-86-A4JF-01 2 179397513 179397513 C T TTN Missense_Mutation p.R34610H 0.22 TCGA-86-A4JF-01 2 179466784 179466784 C A TTN Missense_Mutation p.R18405L 0.13 TCGA-86-A4JF-01 2 179476318 179476318 C T TTN Missense_Mutation p.G16880S 0.23 TCGA-86-A4JF-01 2 179478921 179478921 G C TTN Silent p.L16401L 0.17 TCGA-86-A4JF-01 2 179605690 179605690 C A TTN Missense_Mutation p.Q4090H 0.18 TCGA-86-A4JF-01 2 179643651 179643651 T C TTN Silent p.P1386P 0.29 TCGA-86-A4JF-01 2 182542430 182542430 G T NEUROD1 3'UTR 0.21 TCGA-86-A4JF-01 2 182542607 182542607 C A NEUROD1 Missense_Mutation p.E327D 0.08 tolerated(0.52) benign(0.003) TCGA-86-A4JF-01 2 183860435 183860435 G T NCKAP1 Silent p.S251S 0.10 TCGA-86-A4JF-01 2 185731144 185731144 A T ZNF804A Nonsense_Mutation p.K54* 0.14 TCGA-86-A4JF-01 2 185801566 185801566 A G ZNF804A Silent p.K481K 0.17 TCGA-86-A4JF-01 2 187698688 187698688 C T ZSWIM2 Silent p.T271T 0.17 TCGA-86-A4JF-01 2 189873720 189873720 G T COL3A1 Missense_Mutation p.G1199V 0.20 unknown(0) TCGA-86-A4JF-01 2 189945717 189945717 C T COL5A2 Missense_Mutation p.R302Q 0.09 probably_damaging(0.957) TCGA-86-A4JF-01 2 190620067 190620067 A G OSGEPL1 Silent p.H147H 0.18 TCGA-86-A4JF-01 2 190927343 190927343 C G MSTN 5'UTR 0.16 TCGA-86-A4JF-01 2 191769864 191769864 G A GLS Missense_Mutation p.R317K 0.19 tolerated(0.48) benign(0.03) TCGA-86-A4JF-01 2 191931188 191931188 C T STAT4 Missense_Mutation p.E200K 0.12 tolerated(0.65) benign(0.009) TCGA-86-A4JF-01 2 196750934 196750934 A - DNAH7 Frame_Shift_Del p.F1823Lfs*11 0.18 TCGA-86-A4JF-01 2 196774816 196774816 T C DNAH7 Missense_Mutation p.K1347E 0.12 deleterious(0) probably_damaging(0.992) TCGA-86-A4JF-01 2 196774853 196774853 C G DNAH7 Missense_Mutation p.K1334N 0.08 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 2 198570844 198570844 C T MARS2 Missense_Mutation p.H239Y 0.16 tolerated(1) benign(0.002) TCGA-86-A4JF-01 2 198571570 198571570 C A MARS2 Silent p.R481R 0.11 TCGA-86-A4JF-01 2 201436981 201436981 G T SGOL2 Missense_Mutation p.V638L 0.17 tolerated(0.25) benign(0.036) TCGA-86-A4JF-01 2 201768359 201768359 T C NIF3L1 Silent p.I364I 0.16 TCGA-86-A4JF-01 2 202611433 202611433 G A ALS2 Silent p.G618G 0.11 TCGA-86-A4JF-01 2 203384882 203384882 A G BMPR2 Missense_Mutation p.T309A 0.08 tolerated(0.21) possibly_damaging(0.731) TCGA-86-A4JF-01 2 210545492 210545492 A G MAP2 Missense_Mutation p.N132S 0.21 deleterious_low_confidence(0) possibly_damaging(0.491) TCGA-86-A4JF-01 2 210558734 210558734 A - MAP2 Frame_Shift_Del p.N615Mfs*67 0.20 TCGA-86-A4JF-01 2 21260890 21260890 G A APOB Silent p.G159G 0.06 TCGA-86-A4JF-01 2 219691684 219691684 G A PRKAG3 Missense_Mutation p.R379C 0.19 deleterious(0.01) probably_damaging(0.969) TCGA-86-A4JF-01 2 220087144 220087144 G A ATG9A Missense_Mutation p.A626V 0.16 tolerated(0.21) benign(0.006) TCGA-86-A4JF-01 2 220167117 220167117 T C PTPRN Missense_Mutation p.R246G 0.36 deleterious(0) benign(0.24) TCGA-86-A4JF-01 2 220167311 220167311 T C PTPRN Missense_Mutation p.Y209C 0.19 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 2 223918043 223918043 C T KCNE4 Silent p.N165N 0.08 TCGA-86-A4JF-01 2 225265821 225265821 G T FAM124B Missense_Mutation p.P222Q 0.13 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 2 228128534 228128534 C T COL4A3 Missense_Mutation p.P397S 0.32 probably_damaging(1) TCGA-86-A4JF-01 2 228167757 228167757 G T COL4A3 Missense_Mutation p.A1296S 0.25 unknown(0) TCGA-86-A4JF-01 2 231338077 231338077 T G SP100 Missense_Mutation p.C490G 0.21 deleterious(0.01) benign(0.402) TCGA-86-A4JF-01 2 231948463 231948463 C T PSMD1 Missense_Mutation p.L570F 0.25 deleterious(0) probably_damaging(0.913) TCGA-86-A4JF-01 2 231973421 231973421 T A HTR2B Missense_Mutation p.N419I 0.15 deleterious_low_confidence(0.01) benign(0.355) TCGA-86-A4JF-01 2 233759611 233759611 C A NGEF Missense_Mutation p.V282F 0.22 deleterious(0) possibly_damaging(0.879) TCGA-86-A4JF-01 2 234752892 234752892 G C HJURP Missense_Mutation p.T178S 0.13 tolerated(0.05) benign(0.157) TCGA-86-A4JF-01 2 238642443 238642443 G A LRRFIP1 Intron 0.19 TCGA-86-A4JF-01 2 240016591 240016591 A G HDAC4 Intron 0.27 TCGA-86-A4JF-01 2 240036897 240036897 C T HDAC4 Missense_Mutation p.R543Q 0.23 tolerated(0.73) benign(0.01) TCGA-86-A4JF-01 2 240985091 240985091 G A OR6B3 Silent p.H133H 0.19 TCGA-86-A4JF-01 2 242141639 242141639 G A ANO7 Missense_Mutation p.G269S 0.25 deleterious(0.03) probably_damaging(1) TCGA-86-A4JF-01 2 24240374 24240374 C T MFSD2B Silent p.H199H 0.38 TCGA-86-A4JF-01 2 25966004 25966004 G A ASXL2 Nonsense_Mutation p.Q1068* 0.11 TCGA-86-A4JF-01 2 26654770 26654770 C T DRC1 Missense_Mutation p.R262C 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-86-A4JF-01 2 26781545 26781545 C A OTOF 5'UTR 0.15 TCGA-86-A4JF-01 2 27164933 27164933 T A DPYSL5 Missense_Mutation p.V402E 0.21 deleterious(0) benign(0.356) TCGA-86-A4JF-01 2 27306073 27306073 G A EMILIN1 Missense_Mutation p.R545H 0.23 benign(0.004) TCGA-86-A4JF-01 2 27670707 27670707 G A IFT172 Missense_Mutation p.A1504V 0.14 deleterious(0) possibly_damaging(0.594) TCGA-86-A4JF-01 2 27800044 27800044 A G C2orf16 Missense_Mutation p.Q202R 0.07 deleterious(0.03) probably_damaging(0.987) TCGA-86-A4JF-01 2 27804048 27804048 A G C2orf16 Missense_Mutation p.K1537E 0.19 deleterious(0.04) unknown(0) TCGA-86-A4JF-01 2 27806526 27806526 C T ZNF512 Missense_Mutation p.T11I 0.07 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-86-A4JF-01 2 29293497 29293497 T C C2orf71 Missense_Mutation p.T1211A 0.21 tolerated(0.49) benign(0.037) TCGA-86-A4JF-01 2 32693563 32693563 C G BIRC6 Missense_Mutation p.L1947V 0.05 probably_damaging(0.978) TCGA-86-A4JF-01 2 47637430 47637430 G T MSH2 Missense_Mutation p.E188D 0.21 deleterious(0) probably_damaging(0.99) TCGA-86-A4JF-01 2 47637431 47637431 G T MSH2 Missense_Mutation p.A189S 0.21 tolerated(0.62) benign(0.132) TCGA-86-A4JF-01 2 54876127 54876127 C T SPTBN1 Missense_Mutation p.R1668C 0.24 deleterious(0) probably_damaging(0.967) TCGA-86-A4JF-01 2 55481268 55481268 G A MTIF2 Silent p.H191H 0.10 TCGA-86-A4JF-01 2 55895050 55895050 G C PNPT1 Missense_Mutation p.F340L 0.17 deleterious(0.02) possibly_damaging(0.708) TCGA-86-A4JF-01 2 55895085 55895085 G C PNPT1 Missense_Mutation p.P329A 0.15 tolerated(0.11) benign(0.103) TCGA-86-A4JF-01 2 63631215 63631215 C T WDPCP Missense_Mutation p.R468K 0.09 tolerated(1) benign(0.009) TCGA-86-A4JF-01 2 63667064 63667064 A - WDPCP Intron 0.17 TCGA-86-A4JF-01 2 64114558 64114561 TCAT - UGP2 Frame_Shift_Del p.I366Nfs*2 0.19 TCGA-86-A4JF-01 2 64139705 64139705 C T VPS54 Missense_Mutation p.S838N 0.11 tolerated(0.48) benign(0.002) TCGA-86-A4JF-01 2 71300674 71300674 G A NAGK Missense_Mutation p.A223T 0.18 tolerated(0.13) benign(0.029) TCGA-86-A4JF-01 2 72360277 72360277 C A CYP26B1 Missense_Mutation p.G341C 0.24 deleterious(0.03) possibly_damaging(0.895) TCGA-86-A4JF-01 2 74593143 74593143 A C DCTN1 Silent p.P921P 0.08 TCGA-86-A4JF-01 2 74594185 74594185 C T DCTN1 Missense_Mutation p.R768H 0.07 deleterious(0.03) benign(0.066) TCGA-86-A4JF-01 2 74690174 74690174 C T MOGS Intron 0.05 TCGA-86-A4JF-01 2 74902472 74902472 C T SEMA4F Missense_Mutation p.L445F 0.21 tolerated(0.15) possibly_damaging(0.882) TCGA-86-A4JF-01 2 79384324 79384324 A C REG3A 3'UTR 0.06 TCGA-86-A4JF-01 2 86346107 86346107 C T PTCD3 Nonsense_Mutation p.R160* 0.26 TCGA-86-A4JF-01 2 86705316 86705316 T C KDM3A Missense_Mutation p.W706R 0.16 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 2 88857452 88857452 G A EIF2AK3 Silent p.Y1051Y 0.19 TCGA-86-A4JF-01 2 89266202 89266202 C T IGKV1-6 Splice_Site p.X19_splice 0.09 TCGA-86-A4JF-01 2 89278277 89278277 T A IGKV3-7 Nonsense_Mutation p.R20* 0.19 TCGA-86-A4JF-01 2 9013370 9013370 A G MBOAT2 Missense_Mutation p.C251R 0.22 deleterious(0.02) benign(0.17) TCGA-86-A4JF-01 2 97543650 97543650 G A FAM178B Silent p.L662L 0.19 TCGA-86-A4JF-01 3 100014012 100014012 T - TBC1D23 Frame_Shift_Del p.F229Lfs*5 0.16 TCGA-86-A4JF-01 3 100567680 100567680 C T ABI3BP Missense_Mutation p.R472Q 0.23 tolerated(0.25) benign(0.031) TCGA-86-A4JF-01 3 101080689 101080689 C T SENP7 Missense_Mutation p.C498Y 0.13 tolerated(0.11) benign(0.027) TCGA-86-A4JF-01 3 105378048 105378048 G A CBLB Silent p.P905P 0.16 TCGA-86-A4JF-01 3 111923077 111923077 T C SLC9C1 Silent p.L720L 0.23 TCGA-86-A4JF-01 3 112255249 112255249 A C ATG3 Intron 0.24 TCGA-86-A4JF-01 3 112299856 112299856 T - SLC35A5 Frame_Shift_Del p.Y300Mfs*8 0.16 TCGA-86-A4JF-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.17 TCGA-86-A4JF-01 3 114058243 114058243 C A ZBTB20 Missense_Mutation p.W612L 0.19 deleterious(0.02) probably_damaging(0.973) TCGA-86-A4JF-01 3 119301279 119301279 A T ADPRH Missense_Mutation p.Q88L 0.21 tolerated(0.09) benign(0.005) TCGA-86-A4JF-01 3 120357337 120357338 - C HGD Frame_Shift_Ins p.V324Gfs*3 0.13 TCGA-86-A4JF-01 3 122126162 122126162 C T FAM162A Nonsense_Mutation p.R100* 0.15 TCGA-86-A4JF-01 3 122255189 122255189 C T PARP9 Missense_Mutation p.V671M 0.15 deleterious(0) probably_damaging(0.967) TCGA-86-A4JF-01 3 122437794 122437794 C T PARP14 Missense_Mutation p.T1599M 0.25 tolerated(0.18) benign(0.007) TCGA-86-A4JF-01 3 123066637 123066637 G A ADCY5 Silent p.D466D 0.08 TCGA-86-A4JF-01 3 123166724 123166724 C T ADCY5 Silent p.S223S 0.12 TCGA-86-A4JF-01 3 123988084 123988084 C T KALRN Silent p.F315F 0.15 TCGA-86-A4JF-01 3 126445943 126445943 G T CHCHD6 Missense_Mutation p.R37L 0.16 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 3 126708479 126708479 G A PLXNA1 Missense_Mutation p.R348H 0.04 tolerated(0.32) probably_damaging(1) TCGA-86-A4JF-01 3 127702994 127702994 A G KBTBD12 Missense_Mutation p.Q582R 0.19 tolerated(0.57) benign(0.004) TCGA-86-A4JF-01 3 128205169 128205169 T C GATA2 Missense_Mutation p.H91R 0.30 deleterious(0.04) probably_damaging(0.921) TCGA-86-A4JF-01 3 130686015 130686016 - G ATP2C1 Frame_Shift_Ins p.E419Gfs*5 0.15 TCGA-86-A4JF-01 3 131404747 131404747 G A CPNE4 Missense_Mutation p.A188V 0.08 deleterious(0.01) benign(0.081) TCGA-86-A4JF-01 3 134514434 134514434 T C EPHB1 5'UTR 0.19 TCGA-86-A4JF-01 3 135721003 135721003 T A PPP2R3A Missense_Mutation p.D221E 0.19 tolerated_low_confidence(0.26) benign(0.003) TCGA-86-A4JF-01 3 138665136 138665136 G C FOXL2 Nonsense_Mutation p.Y143* 0.25 TCGA-86-A4JF-01 3 141231020 141231020 T C RASA2 Missense_Mutation p.L50S 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-86-A4JF-01 3 141697462 141697462 C T TFDP2 Missense_Mutation p.C140Y 0.14 deleterious(0) possibly_damaging(0.887) TCGA-86-A4JF-01 3 142561835 142561835 G T PCOLCE2 Silent p.P168P 0.24 TCGA-86-A4JF-01 3 148458773 148458773 C A AGTR1 Intron 0.15 TCGA-86-A4JF-01 3 148545858 148545858 G A CPB1 Silent p.T47T 0.19 TCGA-86-A4JF-01 3 150391774 150391774 T C FAM194A Missense_Mutation p.T438A 0.22 deleterious(0.01) possibly_damaging(0.861) TCGA-86-A4JF-01 3 151461908 151461908 G A AADACL2 Missense_Mutation p.R130K 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-86-A4JF-01 3 151461909 151461909 A G AADACL2 Silent p.R130R 0.21 TCGA-86-A4JF-01 3 152880854 152880854 C T RAP2B Silent p.R124R 0.17 TCGA-86-A4JF-01 3 153998377 153998377 T C DHX36 Missense_Mutation p.K853R 0.17 tolerated(0.23) benign(0.02) TCGA-86-A4JF-01 3 160142723 160142723 A C SMC4 Silent p.V798V 0.16 TCGA-86-A4JF-01 3 164783108 164783108 G A SI Missense_Mutation p.R250C 0.10 deleterious(0) probably_damaging(0.929) TCGA-86-A4JF-01 3 167068281 167068283 TCT - ZBBX In_Frame_Del p.E151del 0.21 TCGA-86-A4JF-01 3 167754633 167754633 C T GOLIM4 Silent p.E278E 0.17 TCGA-86-A4JF-01 3 169099029 169099029 C T MECOM Silent p.G107G 0.11 TCGA-86-A4JF-01 3 169637308 169637308 A G SAMD7 Missense_Mutation p.T8A 0.14 tolerated(0.33) benign(0.03) TCGA-86-A4JF-01 3 170803010 170803010 C A TNIK Missense_Mutation p.M965I 0.23 tolerated(0.22) benign(0.004) TCGA-86-A4JF-01 3 173997177 173997177 C T NLGN1 Silent p.D462D 0.17 TCGA-86-A4JF-01 3 179288016 179288016 A - ACTL6A Frame_Shift_Del p.N90Mfs*47 0.19 TCGA-86-A4JF-01 3 179294442 179294442 T C ACTL6A Silent p.I202I 0.09 TCGA-86-A4JF-01 3 183882619 183882619 C T DVL3 Missense_Mutation p.R167W 0.12 tolerated(0.09) possibly_damaging(0.496) TCGA-86-A4JF-01 3 186760714 186760714 C T ST6GAL1 Missense_Mutation p.R75C 0.14 benign(0.205) TCGA-86-A4JF-01 3 186969493 186969493 G A MASP1 Missense_Mutation p.P314S 0.12 deleterious(0.02) possibly_damaging(0.867) TCGA-86-A4JF-01 3 193040284 193040284 C A ATP13A5 Missense_Mutation p.S585I 0.21 deleterious(0.04) probably_damaging(0.978) TCGA-86-A4JF-01 3 194117241 194117241 G A GP5 3'UTR 0.17 TCGA-86-A4JF-01 3 25668746 25668747 - A TOP2B Frame_Shift_Ins p.A645Cfs*2 0.23 TCGA-86-A4JF-01 3 32031667 32031667 G T ZNF860 Nonsense_Mutation p.G366* 0.07 TCGA-86-A4JF-01 3 37381674 37381674 G T GOLGA4 Silent p.V2167V 0.23 TCGA-86-A4JF-01 3 39307068 39307068 G T CX3CR1 Nonsense_Mutation p.C343* 0.26 TCGA-86-A4JF-01 3 40299762 40299762 G T MYRIP 3'UTR 0.11 TCGA-86-A4JF-01 3 4354885 4354885 C T SETMAR Missense_Mutation p.R154C 0.09 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-86-A4JF-01 3 44612320 44612320 A G ZKSCAN7 Missense_Mutation p.H573R 0.32 deleterious(0) probably_damaging(0.939) TCGA-86-A4JF-01 3 46539614 46539614 C T RTP3 Missense_Mutation p.P21L 0.24 deleterious(0) possibly_damaging(0.88) TCGA-86-A4JF-01 3 47452631 47452631 G A PTPN23 Missense_Mutation p.A1115T 0.17 benign(0.195) TCGA-86-A4JF-01 3 47453843 47453843 G A PTPN23 Missense_Mutation p.G1417R 0.23 possibly_damaging(0.813) TCGA-86-A4JF-01 3 47470146 47470146 C A SCAP Silent p.P89P 0.09 TCGA-86-A4JF-01 3 48699025 48699025 A G CELSR3 Missense_Mutation p.V348A 0.12 tolerated(0.8) benign(0.002) TCGA-86-A4JF-01 3 49695122 49695122 G A BSN Silent p.G2711G 0.26 TCGA-86-A4JF-01 3 49695611 49695611 G - BSN Frame_Shift_Del p.G2876Dfs*18 0.13 TCGA-86-A4JF-01 3 49897039 49897039 G A CAMKV Silent p.T406T 0.18 TCGA-86-A4JF-01 3 50220896 50220896 G T SEMA3F Missense_Mutation p.D378Y 0.13 deleterious(0) probably_damaging(0.988) TCGA-86-A4JF-01 3 51672255 51672255 A C RAD54L2 Missense_Mutation p.Q593P 0.08 deleterious(0.03) benign(0.047) TCGA-86-A4JF-01 3 52558586 52558586 C T NT5DC2 Missense_Mutation p.R525H 0.30 deleterious(0.02) probably_damaging(1) TCGA-86-A4JF-01 3 57542768 57542770 CTT - PDE12 In_Frame_Del p.S224del 0.25 TCGA-86-A4JF-01 3 62189588 62189588 T C PTPRG Missense_Mutation p.F707L 0.17 tolerated(0.49) benign(0.03) TCGA-86-A4JF-01 3 95374324 95374324 A T MTHFD2P1 RNA 0.18 TCGA-86-A4JF-01 3 9877303 9877303 G A TTLL3 3'Flank 0.12 TCGA-86-A4JF-01 4 106967834 106967834 C A TBCK Missense_Mutation p.A859S 0.11 tolerated(0.38) benign(0.047) TCGA-86-A4JF-01 4 110897233 110897233 G A EGF Missense_Mutation p.G632D 0.15 tolerated(1) benign(0.028) TCGA-86-A4JF-01 4 113352044 113352044 T C ALPK1 Silent p.H447H 0.08 TCGA-86-A4JF-01 4 113435810 113435810 G T NEUROG2 3'UTR 0.24 TCGA-86-A4JF-01 4 114163342 114163342 G A ANK2 Missense_Mutation p.G290S 0.17 possibly_damaging(0.78) TCGA-86-A4JF-01 4 118006110 118006110 G C TRAM1L1 Nonsense_Mutation p.S147* 0.07 TCGA-86-A4JF-01 4 119472272 119472272 T C CEP170P1 RNA 0.17 TCGA-86-A4JF-01 4 119736237 119736237 C T SEC24D Missense_Mutation p.M249I 0.09 tolerated(0.36) benign(0.006) TCGA-86-A4JF-01 4 119951497 119951497 G T SYNPO2 Missense_Mutation p.D523Y 0.06 deleterious(0) possibly_damaging(0.596) TCGA-86-A4JF-01 4 123164167 123164167 G A KIAA1109 Silent p.G1562G 0.21 TCGA-86-A4JF-01 4 123813514 123813514 A C FGF2 Missense_Mutation p.K277T 0.16 tolerated(0.16) probably_damaging(0.981) TCGA-86-A4JF-01 4 134072310 134072310 C G PCDH10 Missense_Mutation p.P339A 0.08 tolerated(0.93) benign(0.107) TCGA-86-A4JF-01 4 134073202 134073202 G T PCDH10 Missense_Mutation p.G636V 0.19 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 4 139964452 139964452 A G CCRN4L Missense_Mutation p.T139A 0.06 tolerated(0.79) benign(0) TCGA-86-A4JF-01 4 139980118 139980118 C T ELF2 3'UTR 0.08 TCGA-86-A4JF-01 4 141446702 141446702 T C ELMOD2 Silent p.G40G 0.21 TCGA-86-A4JF-01 4 146560479 146560479 G A MMAA Missense_Mutation p.R63K 0.09 tolerated(0.18) benign(0.064) TCGA-86-A4JF-01 4 147560581 147560581 G A POU4F2 Splice_Site p.X96_splice 0.16 TCGA-86-A4JF-01 4 152679922 152679922 A G PET112 Splice_Site p.X109_splice 0.09 TCGA-86-A4JF-01 4 154626387 154626387 A G TLR2 Silent p.V776V 0.08 TCGA-86-A4JF-01 4 154626396 154626396 A G TLR2 Silent p.R779R 0.11 TCGA-86-A4JF-01 4 158057766 158057766 A - GLRB Frame_Shift_Del p.S150Vfs*7 0.10 TCGA-86-A4JF-01 4 158073916 158073916 C T GLRB Silent p.A317A 0.15 TCGA-86-A4JF-01 4 16258113 16258113 G A TAPT1-AS1 RNA 0.11 TCGA-86-A4JF-01 4 163032540 163032540 C G FSTL5 Missense_Mutation p.K3N 0.14 tolerated_low_confidence(0.08) benign(0.033) TCGA-86-A4JF-01 4 166262968 166262968 A T MSMO1 Missense_Mutation p.D251V 0.09 deleterious(0) probably_damaging(0.99) TCGA-86-A4JF-01 4 167655922 167655922 A G SPOCK3 3'UTR 0.20 TCGA-86-A4JF-01 4 167656103 167656103 T C SPOCK3 Missense_Mutation p.D427G 0.20 tolerated_low_confidence(0.2) unknown(0) TCGA-86-A4JF-01 4 170611783 170611783 T C CLCN3 Missense_Mutation p.C237R 0.21 deleterious(0.03) benign(0.225) TCGA-86-A4JF-01 4 175237324 175237324 A C CEP44 Missense_Mutation p.K323N 0.09 deleterious(0.04) benign(0.014) TCGA-86-A4JF-01 4 17528453 17528453 G C CLRN2 Silent p.A149A 0.18 TCGA-86-A4JF-01 4 1807625 1807625 C T FGFR3 Silent p.A600A 0.07 TCGA-86-A4JF-01 4 183601769 183601769 G T TENM3 Missense_Mutation p.K571N 0.07 deleterious(0.01) possibly_damaging(0.788) TCGA-86-A4JF-01 4 183814234 183814234 G A DCTD Silent p.D147D 0.30 TCGA-86-A4JF-01 4 185683580 185683580 T C ACSL1 Missense_Mutation p.D540G 0.20 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 4 186244751 186244752 - A SNX25 Frame_Shift_Ins p.S354Ifs*14 0.15 TCGA-86-A4JF-01 4 186366660 186366660 T C CCDC110 Missense_Mutation p.H833R 0.12 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-86-A4JF-01 4 187630638 187630638 T A FAT1 Missense_Mutation p.H115L 0.25 benign(0.13) TCGA-86-A4JF-01 4 20619073 20619073 G T SLIT2 Missense_Mutation p.G1383V 0.19 deleterious(0) possibly_damaging(0.548) TCGA-86-A4JF-01 4 25019697 25019697 G C LGI2 Missense_Mutation p.S190C 0.12 deleterious(0.03) probably_damaging(0.998) TCGA-86-A4JF-01 4 2935297 2935297 C T MFSD10 Missense_Mutation p.G89R 0.08 deleterious(0) possibly_damaging(0.504) TCGA-86-A4JF-01 4 3419254 3419254 G T RGS12 Missense_Mutation p.G916V 0.19 deleterious(0) possibly_damaging(0.851) TCGA-86-A4JF-01 4 37848864 37848864 A G PGM2 Silent p.K410K 0.05 TCGA-86-A4JF-01 4 40113714 40113714 A T N4BP2 Silent p.A503A 0.09 TCGA-86-A4JF-01 4 40351384 40351384 T A CHRNA9 Missense_Mutation p.L284Q 0.10 deleterious(0) probably_damaging(0.997) TCGA-86-A4JF-01 4 41621388 41621389 - AG LIMCH1 Frame_Shift_Ins p.E293Rfs*61 0.11 TCGA-86-A4JF-01 4 48379984 48379984 G A SLAIN2 Missense_Mutation p.A204T 0.22 tolerated(0.22) benign(0.01) TCGA-86-A4JF-01 4 4864600 4864600 G A MSX1 Silent p.T214T 0.10 TCGA-86-A4JF-01 4 533031 533031 G A PIGG Missense_Mutation p.R942H 0.09 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 4 5830291 5830292 - T CRMP1 Frame_Shift_Ins p.N576Kfs*26 0.11 TCGA-86-A4JF-01 4 5857933 5857933 C T CRMP1 Missense_Mutation p.V253M 0.13 tolerated(0.08) probably_damaging(1) TCGA-86-A4JF-01 4 6302489 6302489 C T WFS1 Missense_Mutation p.H323Y 0.20 deleterious(0) possibly_damaging(0.84) TCGA-86-A4JF-01 4 6622930 6622930 C T MAN2B2 Missense_Mutation p.P983L 0.19 tolerated(0.15) benign(0.008) TCGA-86-A4JF-01 4 66467664 66467664 A G EPHA5 Missense_Mutation p.V202A 0.22 deleterious(0) benign(0.339) TCGA-86-A4JF-01 4 6710991 6710991 C T MRFAP1L1 Silent p.E122E 0.20 TCGA-86-A4JF-01 4 68780416 68780416 C A TMPRSS11A Missense_Mutation p.V332L 0.10 tolerated(0.26) benign(0.011) TCGA-86-A4JF-01 4 70078378 70078378 G T UGT2B11 Silent p.S261S 0.21 TCGA-86-A4JF-01 4 70078379 70078379 G T UGT2B11 Missense_Mutation p.S261Y 0.20 tolerated(1) benign(0.019) TCGA-86-A4JF-01 4 70615503 70615503 C A SULT1B1 Missense_Mutation p.R104L 0.20 deleterious(0) probably_damaging(0.989) TCGA-86-A4JF-01 4 71027311 71027311 G T C4orf40 Missense_Mutation p.Q219H 0.14 deleterious_low_confidence(0.01) unknown(0) TCGA-86-A4JF-01 4 73154506 73154506 G A ADAMTS3 Missense_Mutation p.P1004L 0.11 deleterious(0) probably_damaging(0.994) TCGA-86-A4JF-01 4 76811217 76811217 C A PPEF2 Missense_Mutation p.D104Y 0.12 tolerated(0.07) probably_damaging(0.999) TCGA-86-A4JF-01 4 77091113 77091113 T C SCARB2 Silent p.P340P 0.08 TCGA-86-A4JF-01 4 79833082 79833082 C A BMP2K Silent p.P1127P 0.12 TCGA-86-A4JF-01 4 82126021 82126021 G C PRKG2 Missense_Mutation p.Q61E 0.25 tolerated(0.08) benign(0.18) TCGA-86-A4JF-01 4 89680017 89680017 T C FAM13A Silent p.L538L 0.14 TCGA-86-A4JF-01 4 90034803 90034803 T C TIGD2 Silent p.C226C 0.16 TCGA-86-A4JF-01 4 94436524 94436524 G T GRID2 Nonsense_Mutation p.E719* 0.14 TCGA-86-A4JF-01 4 95171962 95171962 A G SMARCAD1 Silent p.L289L 0.16 TCGA-86-A4JF-01 5 109117128 109117128 A T MAN2A1 Missense_Mutation p.D469V 0.16 deleterious(0.01) probably_damaging(0.954) TCGA-86-A4JF-01 5 11023018 11023018 G C CTNND2 Silent p.A954A 0.26 TCGA-86-A4JF-01 5 11199570 11199570 C A CTNND2 Missense_Mutation p.E655D 0.12 deleterious(0.04) probably_damaging(1) TCGA-86-A4JF-01 5 112676373 112676373 A G MCC Missense_Mutation p.L157P 0.10 deleterious_low_confidence(0) benign(0.316) TCGA-86-A4JF-01 5 115783383 115783383 G A SEMA6A Silent p.V673V 0.13 TCGA-86-A4JF-01 5 115803427 115803427 G A SEMA6A Silent p.L582L 0.11 TCGA-86-A4JF-01 5 118867042 118867042 G T HSD17B4 Missense_Mutation p.V671L 0.17 deleterious(0.01) possibly_damaging(0.603) TCGA-86-A4JF-01 5 122343588 122343588 A T SNX24 3'UTR 0.21 TCGA-86-A4JF-01 5 125939778 125939778 G C PHAX Missense_Mutation p.D205H 0.11 deleterious(0) possibly_damaging(0.8) TCGA-86-A4JF-01 5 125939789 125939789 G A PHAX Silent p.G208G 0.11 TCGA-86-A4JF-01 5 128302077 128302077 C T SLC27A6 Nonsense_Mutation p.Q83* 0.10 TCGA-86-A4JF-01 5 132051609 132051609 C T KIF3A Silent p.G323G 0.33 TCGA-86-A4JF-01 5 135583280 135583280 T G TRPC7 Missense_Mutation p.T575P 0.05 deleterious(0) probably_damaging(0.997) TCGA-86-A4JF-01 5 137680720 137680720 A - FAM53C Frame_Shift_Del p.K115Rfs*31 0.20 TCGA-86-A4JF-01 5 13830717 13830717 C T DNAH5 Missense_Mutation p.R2017Q 0.19 possibly_damaging(0.553) TCGA-86-A4JF-01 5 140175289 140175289 A T PCDHA2 Missense_Mutation p.Y247F 0.15 deleterious_low_confidence(0) possibly_damaging(0.604) TCGA-86-A4JF-01 5 140176096 140176096 A T PCDHA2 Missense_Mutation p.K516M 0.17 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-86-A4JF-01 5 140176178 140176178 G A PCDHA2 Silent p.P543P 0.14 TCGA-86-A4JF-01 5 140176254 140176254 A C PCDHA2 Silent p.R569R 0.13 TCGA-86-A4JF-01 5 140188281 140188281 G A PCDHA4 Silent p.A503A 0.19 TCGA-86-A4JF-01 5 140223345 140223345 A T PCDHA8 Intron 0.08 TCGA-86-A4JF-01 5 140264145 140264145 G T PCDHA13 Silent p.P764P 0.17 TCGA-86-A4JF-01 5 140480871 140480871 C A PCDHB3 Missense_Mutation p.T213N 0.16 deleterious_low_confidence(0) possibly_damaging(0.739) TCGA-86-A4JF-01 5 140554653 140554653 G A PCDHB7 Missense_Mutation p.S746N 0.09 tolerated_low_confidence(0.1) benign(0.064) TCGA-86-A4JF-01 5 140559327 140559327 C A PCDHB8 Missense_Mutation p.A571E 0.11 deleterious_low_confidence(0.01) benign(0.306) TCGA-86-A4JF-01 5 140603728 140603728 T C PCDHB14 Silent p.G217G 0.25 TCGA-86-A4JF-01 5 140744451 140744451 G T PCDHGA5 Missense_Mutation p.G185V 0.12 tolerated_low_confidence(0.09) benign(0.259) TCGA-86-A4JF-01 5 140750727 140750727 C - PCDHGB3 Frame_Shift_Del p.A257Lfs*6 0.19 TCGA-86-A4JF-01 5 140769495 140769495 C T PCDHGB4 Missense_Mutation p.L682F 0.06 deleterious(0.04) benign(0.001) TCGA-86-A4JF-01 5 140773060 140773060 G A PCDHGA8 Missense_Mutation p.R227H 0.06 tolerated_low_confidence(0.56) benign(0.028) TCGA-86-A4JF-01 5 140793667 140793667 G C PCDHGA10 Missense_Mutation p.E309Q 0.17 tolerated_low_confidence(0.36) benign(0.065) TCGA-86-A4JF-01 5 140870275 140870275 A G PCDHGC5 Missense_Mutation p.T490A 0.19 deleterious(0.04) benign(0.009) TCGA-86-A4JF-01 5 141014505 141014505 G A HDAC3 Nonsense_Mutation p.Q52* 0.08 TCGA-86-A4JF-01 5 141236891 141236891 A G PCDH1 Missense_Mutation p.L1082P 0.13 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 5 145464071 145464071 G A PLAC8L1 Missense_Mutation p.A153V 0.11 deleterious(0.02) probably_damaging(0.974) TCGA-86-A4JF-01 5 14681701 14681701 C T FAM105B Silent p.D151D 0.23 TCGA-86-A4JF-01 5 148886635 148886635 G A CSNK1A1 Missense_Mutation p.A299V 0.15 deleterious_low_confidence(0.04) benign(0.013) TCGA-86-A4JF-01 5 149216095 149216095 G T PPARGC1B Missense_Mutation p.D693Y 0.12 deleterious(0) probably_damaging(0.974) TCGA-86-A4JF-01 5 149580737 149580737 G A SLC6A7 Missense_Mutation p.G270D 0.12 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 5 149767552 149767552 A G TCOF1 Missense_Mutation p.T983A 0.23 tolerated(0.73) benign(0.004) TCGA-86-A4JF-01 5 150847346 150847346 C T SLC36A1 Nonsense_Mutation p.R195* 0.15 TCGA-86-A4JF-01 5 155771529 155771529 A G SGCD Missense_Mutation p.S12G 0.16 tolerated(0.16) benign(0.024) TCGA-86-A4JF-01 5 156566136 156566136 T C MED7 Missense_Mutation p.I103V 0.20 tolerated(0.25) benign(0.026) TCGA-86-A4JF-01 5 156957869 156957869 G C ADAM19 Missense_Mutation p.T118R 0.09 tolerated(0.48) possibly_damaging(0.512) TCGA-86-A4JF-01 5 158747508 158747509 - C IL12B Frame_Shift_Ins p.V168Gfs*21 0.10 TCGA-86-A4JF-01 5 160018108 160018108 A T ATP10B Missense_Mutation p.D1201E 0.22 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 5 160757957 160757957 C T GABRB2 Missense_Mutation p.R337H 0.20 deleterious(0.03) benign(0.035) TCGA-86-A4JF-01 5 160758126 160758126 T C GABRB2 Missense_Mutation p.T281A 0.14 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 5 169129396 169129397 - TG DOCK2 Frame_Shift_Ins p.E455Rfs*20 0.09 TCGA-86-A4JF-01 5 170876252 170876252 G T FGF18 Missense_Mutation p.G118W 0.18 deleterious(0) possibly_damaging(0.907) TCGA-86-A4JF-01 5 176732845 176732845 C T MXD3 3'Flank 0.26 TCGA-86-A4JF-01 5 176778483 176778483 G A LMAN2 Missense_Mutation p.R56W 0.16 deleterious(0) probably_damaging(0.997) TCGA-86-A4JF-01 5 176859091 176859091 G A GRK6 Missense_Mutation p.A82T 0.09 tolerated(0.17) benign(0.052) TCGA-86-A4JF-01 5 178540864 178540864 T A ADAMTS2 3'UTR 0.19 TCGA-86-A4JF-01 5 179201685 179201685 C T MAML1 Missense_Mutation p.A953V 0.14 deleterious(0.01) benign(0.322) TCGA-86-A4JF-01 5 179292990 179292990 G A TBC1D9B Intron 0.12 TCGA-86-A4JF-01 5 180338442 180338442 G A BTNL8 Nonsense_Mutation p.W167* 0.20 TCGA-86-A4JF-01 5 21765110 21765110 A T CDH12 Missense_Mutation p.C498S 0.13 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 5 21765114 21765114 G T CDH12 Silent p.A496A 0.13 TCGA-86-A4JF-01 5 23526896 23526896 C A PRDM9 Missense_Mutation p.L567I 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-86-A4JF-01 5 26881404 26881404 C T CDH9 Silent p.T737T 0.17 TCGA-86-A4JF-01 5 33549336 33549336 C T ADAMTS12 Silent p.A1426A 0.15 TCGA-86-A4JF-01 5 33616027 33616027 T C ADAMTS12 Missense_Mutation p.Y765C 0.22 deleterious(0) probably_damaging(0.996) TCGA-86-A4JF-01 5 35876508 35876508 G T IL7R Missense_Mutation p.G434C 0.20 tolerated(0.06) probably_damaging(0.957) TCGA-86-A4JF-01 5 35965906 35965906 A G UGT3A1 Missense_Mutation p.V142A 0.21 tolerated(0.25) possibly_damaging(0.731) TCGA-86-A4JF-01 5 36039627 36039627 C A UGT3A2 Missense_Mutation p.A343S 0.21 tolerated(0.07) possibly_damaging(0.665) TCGA-86-A4JF-01 5 38942936 38942936 T C RICTOR Missense_Mutation p.Q1684R 0.08 tolerated(0.17) benign(0.201) TCGA-86-A4JF-01 5 40950050 40950050 C T C7 Missense_Mutation p.H343Y 0.27 tolerated(1) benign(0.041) TCGA-86-A4JF-01 5 52206159 52206159 C A ITGA1 Silent p.I589I 0.19 TCGA-86-A4JF-01 5 5237198 5237198 G A ADAMTS16 Missense_Mutation p.D714N 0.25 tolerated(0.21) possibly_damaging(0.677) TCGA-86-A4JF-01 5 54327397 54327397 A G GZMK Missense_Mutation p.D190G 0.20 deleterious(0.02) benign(0.062) TCGA-86-A4JF-01 5 65460677 65460677 C G SREK1 Missense_Mutation p.S318C 0.11 tolerated(0.07) unknown(0) TCGA-86-A4JF-01 5 6746462 6746462 G A PAPD7 Missense_Mutation p.A211T 0.09 tolerated(0.11) probably_damaging(0.976) TCGA-86-A4JF-01 5 678032 678032 G A TPPP Silent p.L48L 0.10 TCGA-86-A4JF-01 5 72469178 72469178 G - TMEM174 Frame_Shift_Del p.A38Pfs*46 0.15 TCGA-86-A4JF-01 5 73168828 73168828 A T ARHGEF28 Silent p.L857L 0.15 TCGA-86-A4JF-01 5 76926520 76926520 G C OTP Missense_Mutation p.Q183E 0.29 tolerated(0.29) benign(0.093) TCGA-86-A4JF-01 5 79465311 79465311 T C SERINC5 Missense_Mutation p.I204V 0.13 tolerated(0.96) benign(0.009) TCGA-86-A4JF-01 5 86564541 86564541 T C RASA1 Silent p.T91T 0.24 TCGA-86-A4JF-01 5 86690460 86690460 G A CCNH Intron 0.19 TCGA-86-A4JF-01 5 95018645 95018645 G A SPATA9 5'UTR 0.12 TCGA-86-A4JF-01 5 96328758 96328758 C G LNPEP Missense_Mutation p.H391D 0.09 tolerated(0.72) benign(0.002) TCGA-86-A4JF-01 6 100964172 100964172 C G ASCC3 Missense_Mutation p.A1987P 0.09 tolerated(0.35) benign(0.167) TCGA-86-A4JF-01 6 107391046 107391046 A T BEND3 Missense_Mutation p.I450N 0.21 deleterious(0) probably_damaging(0.942) TCGA-86-A4JF-01 6 107391638 107391638 G A BEND3 Missense_Mutation p.L253F 0.16 deleterious(0.02) probably_damaging(0.968) TCGA-86-A4JF-01 6 10755414 10755414 G C TMEM14B Missense_Mutation p.R81T 0.08 deleterious(0) probably_damaging(0.998) TCGA-86-A4JF-01 6 109471354 109471354 G A CEP57L1 Missense_Mutation p.R125H 0.15 deleterious(0.02) benign(0.365) TCGA-86-A4JF-01 6 110714368 110714368 C T DDO Silent p.E240E 0.10 TCGA-86-A4JF-01 6 110777747 110777747 G T SLC22A16 Missense_Mutation p.S176Y 0.15 deleterious(0) probably_damaging(0.989) TCGA-86-A4JF-01 6 116579889 116579889 G A TSPYL4 5'Flank 0.13 TCGA-86-A4JF-01 6 116833430 116833430 C T TRAPPC3L Intron 0.14 TCGA-86-A4JF-01 6 117203554 117203554 C T RFX6 Silent p.L177L 0.18 TCGA-86-A4JF-01 6 118812918 118812918 T C CEP85L Silent p.L459L 0.24 TCGA-86-A4JF-01 6 119327768 119327768 G A FAM184A Silent p.G553G 0.11 TCGA-86-A4JF-01 6 12125447 12125447 C T HIVEP1 Missense_Mutation p.P1807S 0.04 deleterious(0.02) possibly_damaging(0.45) TCGA-86-A4JF-01 6 128505634 128505634 C A PTPRK Missense_Mutation p.G369C 0.17 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 6 129939933 129939933 A G ARHGAP18 Missense_Mutation p.M284T 0.07 deleterious(0) possibly_damaging(0.616) TCGA-86-A4JF-01 6 130762581 130762581 C A TMEM200A Missense_Mutation p.F338L 0.25 tolerated(0.65) benign(0.024) TCGA-86-A4JF-01 6 135507087 135507087 C T MYB Missense_Mutation p.H24Y 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-86-A4JF-01 6 136926361 136926361 C T MAP3K5 Missense_Mutation p.A889T 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-86-A4JF-01 6 139233918 139233918 T A REPS1 Missense_Mutation p.H651L 0.17 tolerated(0.17) benign(0.012) TCGA-86-A4JF-01 6 139563977 139563977 G T TXLNB Missense_Mutation p.P581T 0.24 deleterious_low_confidence(0.04) benign(0.17) TCGA-86-A4JF-01 6 146720638 146720638 C T GRM1 Silent p.L821L 0.13 TCGA-86-A4JF-01 6 146875766 146875766 T C RAB32 3'UTR 0.08 TCGA-86-A4JF-01 6 147588246 147588246 A C STXBP5 Silent p.T219T 0.17 TCGA-86-A4JF-01 6 148835512 148835512 T C SASH1 Missense_Mutation p.L261S 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-86-A4JF-01 6 148865014 148865014 G T SASH1 Missense_Mutation p.G803V 0.15 tolerated_low_confidence(0.22) benign(0.021) TCGA-86-A4JF-01 6 150719297 150719298 - G IYD 3'UTR 0.16 TCGA-86-A4JF-01 6 151358114 151358114 T C MTHFD1L Missense_Mutation p.L903S 0.10 deleterious(0.01) probably_damaging(0.986) TCGA-86-A4JF-01 6 152631900 152631900 C G SYNE1 Missense_Mutation p.A5607P 0.09 benign(0.265) TCGA-86-A4JF-01 6 152784490 152784490 G T SYNE1 Missense_Mutation p.Q699K 0.18 benign(0.05) TCGA-86-A4JF-01 6 154567876 154567876 C T IPCEF1 Missense_Mutation p.R32Q 0.19 deleterious(0) probably_damaging(0.943) TCGA-86-A4JF-01 6 159403600 159403600 G A RSPH3 Missense_Mutation p.R347C 0.06 tolerated(0.16) benign(0.081) TCGA-86-A4JF-01 6 159653528 159653528 G A FNDC1 Missense_Mutation p.A662T 0.15 tolerated_low_confidence(0.36) unknown(0) TCGA-86-A4JF-01 6 160454136 160454136 T - IGF2R Frame_Shift_Del p.L403Pfs*10 0.15 TCGA-86-A4JF-01 6 160575895 160575895 T C SLC22A1 Missense_Mutation p.V484A 0.18 deleterious(0) probably_damaging(0.976) TCGA-86-A4JF-01 6 161006106 161006106 G T LPA Silent p.R1421R 0.21 TCGA-86-A4JF-01 6 161032737 161032737 C A LPA Missense_Mutation p.R820S 0.14 tolerated_low_confidence(0.75) probably_damaging(0.962) TCGA-86-A4JF-01 6 161032738 161032738 C T LPA Missense_Mutation p.R820K 0.14 tolerated_low_confidence(0.91) probably_damaging(0.91) TCGA-86-A4JF-01 6 161054928 161054928 C A LPA Missense_Mutation p.R364S 0.13 tolerated(0.74) benign(0.402) TCGA-86-A4JF-01 6 161054929 161054929 C T LPA Missense_Mutation p.R364K 0.13 tolerated(0.92) benign(0.14) TCGA-86-A4JF-01 6 161174115 161174115 G A PLG 3'UTR 0.16 TCGA-86-A4JF-01 6 162683714 162683714 G T PARK2 Silent p.G85G 0.17 TCGA-86-A4JF-01 6 165715712 165715712 T C C6orf118 Silent p.P33P 0.27 TCGA-86-A4JF-01 6 167275639 167275639 A T RPS6KA2 Missense_Mutation p.L7Q 0.15 tolerated_low_confidence(0.6) possibly_damaging(0.883) TCGA-86-A4JF-01 6 168465694 168465694 G A FRMD1 Missense_Mutation p.R169C 0.14 deleterious(0) probably_damaging(0.987) TCGA-86-A4JF-01 6 169623450 169623450 A T THBS2 Missense_Mutation p.V965D 0.20 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 6 170591878 170591878 C T DLL1 3'UTR 0.15 TCGA-86-A4JF-01 6 18122805 18122805 C G NHLRC1 Silent p.A11A 0.22 TCGA-86-A4JF-01 6 25916990 25916990 G T SLC17A2 Missense_Mutation p.H285N 0.17 tolerated(0.07) probably_damaging(0.962) TCGA-86-A4JF-01 6 26200031 26200031 C T HIST1H2BF Missense_Mutation p.A82V 0.24 tolerated_low_confidence(0.1) benign(0.316) TCGA-86-A4JF-01 6 27834894 27834894 C A HIST1H1B Silent p.T138T 0.22 TCGA-86-A4JF-01 6 28268966 28268967 - A PGBD1 Frame_Shift_Ins p.N447Kfs*28 0.11 TCGA-86-A4JF-01 6 29430310 29430310 C T OR2H1 Missense_Mutation p.A255V 0.12 tolerated(0.39) benign(0.094) TCGA-86-A4JF-01 6 2949161 2949161 G A SERPINB6 Missense_Mutation p.T239I 0.05 tolerated(0.12) benign(0.175) TCGA-86-A4JF-01 6 29556085 29556085 G A OR2H2 Missense_Mutation p.V122M 0.17 deleterious(0.04) benign(0.243) TCGA-86-A4JF-01 6 30624499 30624499 A G DHX16 Missense_Mutation p.V729A 0.19 deleterious(0.01) unknown(0) TCGA-86-A4JF-01 6 31997054 31997054 C G C4B Silent p.A1205A 0.19 TCGA-86-A4JF-01 6 32012899 32012899 C T TNXB Missense_Mutation p.G33D 0.19 deleterious(0) probably_damaging(0.967) TCGA-86-A4JF-01 6 32046972 32046972 G A RNA5SP206 5'Flank 0.05 TCGA-86-A4JF-01 6 33154517 33154517 C T COL11A2 Missense_Mutation p.E229K 0.23 benign(0.041) TCGA-86-A4JF-01 6 33179100 33179100 C T RING1 Silent p.G207G 0.19 TCGA-86-A4JF-01 6 33237776 33237776 C T VPS52 Silent p.T76T 0.16 TCGA-86-A4JF-01 6 33405509 33405509 C A SYNGAP1 Missense_Mutation p.P276H 0.27 deleterious(0) probably_damaging(0.971) TCGA-86-A4JF-01 6 33626605 33626605 C T ITPR3 Silent p.N176N 0.10 TCGA-86-A4JF-01 6 36106756 36106756 T C MAPK13 Silent p.P314P 0.15 TCGA-86-A4JF-01 6 38702370 38702370 A G DNAH8 Missense_Mutation p.D27G 0.16 benign(0.114) TCGA-86-A4JF-01 6 401690 401690 G T IRF4 Missense_Mutation p.G338W 0.07 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 6 40998232 40998232 G - UNC5CL Frame_Shift_Del p.P410Qfs*33 0.19 TCGA-86-A4JF-01 6 41753998 41753998 A C PRICKLE4 Missense_Mutation p.S239R 0.22 tolerated(0.27) benign(0.036) TCGA-86-A4JF-01 6 42141291 42141291 G T GUCA1A 5'UTR 0.14 TCGA-86-A4JF-01 6 42147073 42147073 G A GUCA1A Missense_Mutation p.V180M 0.09 tolerated(0.06) probably_damaging(0.997) TCGA-86-A4JF-01 6 42644556 42644556 G T UBR2 Nonsense_Mutation p.E1475* 0.18 TCGA-86-A4JF-01 6 42832508 42832508 C T GLTSCR1L Missense_Mutation p.P855L 0.19 tolerated(0.56) benign(0.001) TCGA-86-A4JF-01 6 43499297 43499297 G C XPO5 Silent p.L820L 0.09 TCGA-86-A4JF-01 6 43591806 43591806 C T GTPBP2 Splice_Site p.X367_splice 0.21 TCGA-86-A4JF-01 6 44390450 44390451 CT - CDC5L Frame_Shift_Del p.S437Yfs*4 0.19 TCGA-86-A4JF-01 6 46659283 46659283 G A TDRD6 Missense_Mutation p.E1140K 0.24 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 6 49427204 49427204 G C MUT 5'UTR 0.15 TCGA-86-A4JF-01 6 51799086 51799086 G A PKHD1 Silent p.I1981I 0.21 TCGA-86-A4JF-01 6 52374378 52374378 A G TRAM2 Missense_Mutation p.Y140H 0.18 tolerated(0.1) benign(0.2) TCGA-86-A4JF-01 6 55145180 55145180 T C HCRTR2 Missense_Mutation p.F348S 0.18 deleterious(0.01) possibly_damaging(0.643) TCGA-86-A4JF-01 6 56857346 56857346 G T BEND6 Missense_Mutation p.M97I 0.15 tolerated_low_confidence(0.14) benign(0.38) TCGA-86-A4JF-01 6 57189079 57189079 G A PRIM2 Splice_Site p.X113_splice 0.29 TCGA-86-A4JF-01 6 70962016 70962016 A G COL9A1 Silent p.G589G 0.05 TCGA-86-A4JF-01 6 70991169 70991169 T A COL9A1 Splice_Site p.X268_splice 0.24 TCGA-86-A4JF-01 6 71233804 71233804 A C FAM135A Missense_Mutation p.Y413S 0.09 deleterious(0) probably_damaging(0.939) TCGA-86-A4JF-01 6 7249029 7249029 A G RREB1 Missense_Mutation p.H1686R 0.33 tolerated(0.9) benign(0.002) TCGA-86-A4JF-01 6 72891997 72891997 C A RIMS1 Missense_Mutation p.P275T 0.13 deleterious(0.03) benign(0.034) TCGA-86-A4JF-01 6 73751713 73751714 - C KCNQ5 Frame_Shift_Ins p.C184Lfs*6 0.20 TCGA-86-A4JF-01 6 74228506 74228506 A G EEF1A1 Silent p.L229L 0.18 TCGA-86-A4JF-01 6 84233331 84233331 G T PRSS35 Missense_Mutation p.M57I 0.13 tolerated(0.16) benign(0.001) TCGA-86-A4JF-01 6 87967553 87967553 A G ZNF292 Silent p.P1402P 0.22 TCGA-86-A4JF-01 6 87968161 87968161 G A ZNF292 Missense_Mutation p.R1605H 0.23 tolerated_low_confidence(0.1) benign(0.014) TCGA-86-A4JF-01 6 88218206 88218206 C T SLC35A1 Silent p.L215L 0.21 TCGA-86-A4JF-01 6 88313200 88313200 C T ORC3 Silent p.G92G 0.14 TCGA-86-A4JF-01 6 88854818 88854818 T A CNR1 Missense_Mutation p.Q59L 0.21 tolerated_low_confidence(0.32) benign(0.021) TCGA-86-A4JF-01 6 90039500 90039500 A G UBE2J1 Silent p.G285G 0.13 TCGA-86-A4JF-01 6 99824025 99824025 T C COQ3 Missense_Mutation p.I174V 0.18 tolerated(0.07) possibly_damaging(0.669) TCGA-86-A4JF-01 7 100173512 100173515 ATGG - LRCH4 Frame_Shift_Del p.I585Mfs*23 0.27 TCGA-86-A4JF-01 7 100218578 100218578 T A TFR2 Missense_Mutation p.S770C 0.32 deleterious(0.01) possibly_damaging(0.855) TCGA-86-A4JF-01 7 100244608 100244608 G A ACTL6B Missense_Mutation p.P308S 0.17 tolerated(0.1) possibly_damaging(0.734) TCGA-86-A4JF-01 7 100246286 100246286 C A ACTL6B Splice_Site p.X188_splice 0.16 TCGA-86-A4JF-01 7 100865910 100865910 G A ZNHIT1 Silent p.R16R 0.08 TCGA-86-A4JF-01 7 105664879 105664879 G T CDHR3 Missense_Mutation p.W710L 0.24 deleterious(0) possibly_damaging(0.907) TCGA-86-A4JF-01 7 106523599 106523599 T A PIK3CG Silent p.T917T 0.19 TCGA-86-A4JF-01 7 107849966 107849966 A T NRCAM Nonsense_Mutation p.L325* 0.15 TCGA-86-A4JF-01 7 11485876 11485876 T A THSD7A Missense_Mutation p.D959V 0.18 tolerated(0.07) benign(0.119) TCGA-86-A4JF-01 7 117432211 117432211 T G CTTNBP2 Missense_Mutation p.T347P 0.23 tolerated(0.49) benign(0.001) TCGA-86-A4JF-01 7 120381640 120381640 A G KCND2 Missense_Mutation p.Y444C 0.21 deleterious(0.01) possibly_damaging(0.76) TCGA-86-A4JF-01 7 120655890 120655890 C A CPED1 Missense_Mutation p.L141I 0.18 tolerated(0.2) benign(0.077) TCGA-86-A4JF-01 7 120911387 120911388 - A CPED1 Frame_Shift_Ins p.H927Tfs*4 0.14 TCGA-86-A4JF-01 7 120971960 120971960 G A WNT16 Missense_Mutation p.G192D 0.21 tolerated(0.53) benign(0.006) TCGA-86-A4JF-01 7 122634980 122634980 T C TAS2R16 Missense_Mutation p.T237A 0.16 deleterious(0.05) benign(0.093) TCGA-86-A4JF-01 7 127239564 127239564 T C FSCN3 Missense_Mutation p.I417T 0.21 deleterious(0.04) probably_damaging(0.959) TCGA-86-A4JF-01 7 128492671 128492671 C T FLNC Silent p.L1957L 0.21 TCGA-86-A4JF-01 7 132193405 132193405 G T PLXNA4 Silent p.L16L 0.32 TCGA-86-A4JF-01 7 134643007 134643007 A G CALD1 Missense_Mutation p.D676G 0.08 tolerated(0.21) possibly_damaging(0.808) TCGA-86-A4JF-01 7 135291548 135291548 C G NUP205 Missense_Mutation p.I985M 0.06 tolerated(0.15) possibly_damaging(0.722) TCGA-86-A4JF-01 7 135376383 135376383 G A SLC13A4 Missense_Mutation p.R411C 0.16 tolerated(0.08) benign(0.103) TCGA-86-A4JF-01 7 138764576 138764576 C T ZC3HAV1 Missense_Mutation p.A371T 0.09 tolerated(1) benign(0) TCGA-86-A4JF-01 7 139715527 139715527 A G TBXAS1 Missense_Mutation p.T458A 0.13 tolerated(0.39) benign(0.401) TCGA-86-A4JF-01 7 141420840 141420840 G A WEE2 Silent p.Q288Q 0.05 TCGA-86-A4JF-01 7 141766448 141766448 T C MGAM Intron 0.23 TCGA-86-A4JF-01 7 142605941 142605941 T A TRPV5 Silent p.R643R 0.22 TCGA-86-A4JF-01 7 142625885 142625885 G T TRPV5 Silent p.S221S 0.16 TCGA-86-A4JF-01 7 142750138 142750138 A G OR6V1 Missense_Mutation p.K234R 0.20 deleterious(0.04) possibly_damaging(0.804) TCGA-86-A4JF-01 7 143039182 143039182 C T CLCN1 Silent p.I581I 0.17 TCGA-86-A4JF-01 7 143417140 143417140 G C FAM115C Missense_Mutation p.D330H 0.16 deleterious(0.01) possibly_damaging(0.757) TCGA-86-A4JF-01 7 143453687 143453687 A G CTAGE6 Silent p.H355H 0.08 TCGA-86-A4JF-01 7 143748150 143748150 C T OR2A5 Missense_Mutation p.S219L 0.17 tolerated(0.39) benign(0.002) TCGA-86-A4JF-01 7 146536874 146536874 C A CNTNAP2 Missense_Mutation p.Q94K 0.22 tolerated(0.08) benign(0.101) TCGA-86-A4JF-01 7 148910865 148910865 G A ZNF282 Missense_Mutation p.R380H 0.12 tolerated(0.08) possibly_damaging(0.67) TCGA-86-A4JF-01 7 149491942 149491942 A G SSPO RNA 0.07 TCGA-86-A4JF-01 7 149515038 149515038 G A SSPO RNA 0.11 TCGA-86-A4JF-01 7 151064135 151064135 A - NUB1 Frame_Shift_Del p.K330Nfs*2 0.11 TCGA-86-A4JF-01 7 154684414 154684414 C T DPP6 3'UTR 0.22 TCGA-86-A4JF-01 7 155255091 155255091 G A EN2 Silent p.K237K 0.06 TCGA-86-A4JF-01 7 157926483 157926483 G C PTPRN2 Missense_Mutation p.S481W 0.17 deleterious(0.04) benign(0.003) TCGA-86-A4JF-01 7 16734482 16734482 G T BZW2 Missense_Mutation p.Q225H 0.15 deleterious(0) possibly_damaging(0.735) TCGA-86-A4JF-01 7 21630859 21630859 C A DNAH11 Silent p.L777L 0.15 TCGA-86-A4JF-01 7 21805079 21805079 C T DNAH11 Silent p.L2999L 0.06 TCGA-86-A4JF-01 7 23552536 23552536 C T TRA2A Missense_Mutation p.E168K 0.11 tolerated(0.21) benign(0.19) TCGA-86-A4JF-01 7 27147656 27147656 G A HOXA3 Silent p.L404L 0.10 TCGA-86-A4JF-01 7 27187138 27187138 C T HOXA6 Silent p.S77S 0.06 TCGA-86-A4JF-01 7 30825465 30825465 G A FAM188B Missense_Mutation p.V174M 0.16 tolerated(0.18) benign(0) TCGA-86-A4JF-01 7 31125016 31125016 C T ADCYAP1R1 Silent p.L210L 0.09 TCGA-86-A4JF-01 7 31617944 31617944 T C CCDC129 Missense_Mutation p.S382P 0.07 tolerated(0.36) benign(0.168) TCGA-86-A4JF-01 7 34097700 34097700 T C BMPER Silent p.C319C 0.15 TCGA-86-A4JF-01 7 36459863 36459863 G C ANLN Missense_Mutation p.R652P 0.21 tolerated(0.06) probably_damaging(0.986) TCGA-86-A4JF-01 7 37780720 37780720 A G GPR141 Missense_Mutation p.Q242R 0.14 tolerated(0.08) possibly_damaging(0.529) TCGA-86-A4JF-01 7 38398126 38398126 G A TRGV3 Missense_Mutation p.A114V 0.18 deleterious(0) probably_damaging(0.988) TCGA-86-A4JF-01 7 43351404 43351404 T A HECW1 Missense_Mutation p.S24T 0.13 deleterious_low_confidence(0) possibly_damaging(0.849) TCGA-86-A4JF-01 7 44149663 44149663 C T AEBP1 Silent p.I400I 0.26 TCGA-86-A4JF-01 7 44613521 44613521 C A DDX56 5'UTR 0.13 TCGA-86-A4JF-01 7 45145190 45145190 T A TBRG4 Silent p.S195S 0.20 TCGA-86-A4JF-01 7 48318328 48318328 A T ABCA13 Nonsense_Mutation p.R2513* 0.16 TCGA-86-A4JF-01 7 4862023 4862023 A T RADIL Splice_Site p.X539_splice 0.18 TCGA-86-A4JF-01 7 50455145 50455145 G T IKZF1 Intron 0.17 TCGA-86-A4JF-01 7 50563060 50563060 C A DDC Missense_Mutation p.C311F 0.13 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 7 53103455 53103455 G A POM121L12 Missense_Mutation p.A31T 0.16 deleterious(0.01) possibly_damaging(0.908) TCGA-86-A4JF-01 7 54823562 54823562 A T SEC61G Missense_Mutation p.I36N 0.15 deleterious(0.03) possibly_damaging(0.629) TCGA-86-A4JF-01 7 55238150 55238151 AG - EGFR Intron 0.09 TCGA-86-A4JF-01 7 55755519 55755519 C A RNU6-389P 3'Flank 0.17 TCGA-86-A4JF-01 7 55863548 55863548 A G SEPT14 3'UTR 0.18 TCGA-86-A4JF-01 7 57188674 57188674 A T ZNF479 Missense_Mutation p.S150T 0.17 tolerated(1) possibly_damaging(0.872) TCGA-86-A4JF-01 7 62752072 62752072 T C ZNF733P RNA 0.20 TCGA-86-A4JF-01 7 66406931 66406931 G A TMEM248 Missense_Mutation p.V27I 0.20 tolerated(0.26) probably_damaging(0.917) TCGA-86-A4JF-01 7 72413643 72413643 G A POM121 Silent p.A772A 0.06 TCGA-86-A4JF-01 7 73152656 73152656 A G ABHD11 Splice_Site p.X96_splice 0.16 TCGA-86-A4JF-01 7 73245716 73245716 T C CLDN4 Missense_Mutation p.M62T 0.20 deleterious(0) benign(0.332) TCGA-86-A4JF-01 7 73790474 73790474 C A CLIP2 Silent p.L581L 0.17 TCGA-86-A4JF-01 7 77325971 77325971 G A RSBN1L Missense_Mutation p.S62N 0.09 tolerated_low_confidence(0.08) benign(0.383) TCGA-86-A4JF-01 7 796599 796599 G A HEATR2 Missense_Mutation p.A480T 0.24 tolerated(0.08) benign(0.103) TCGA-86-A4JF-01 7 87069116 87069116 A T ABCB4 Missense_Mutation p.L533Q 0.16 deleterious(0) probably_damaging(0.995) TCGA-86-A4JF-01 7 89854661 89854661 A G STEAP2 Missense_Mutation p.I89V 0.06 tolerated(0.4) benign(0.026) TCGA-86-A4JF-01 7 91625027 91625027 C T AKAP9 Silent p.D281D 0.18 TCGA-86-A4JF-01 7 92098484 92098484 G A ERVW-1 Silent p.C404C 0.21 TCGA-86-A4JF-01 7 99022730 99022730 C G ATP5J2-PTCD1 Silent p.L524L 0.11 TCGA-86-A4JF-01 7 99104018 99104018 T C ZKSCAN5 Silent p.S117S 0.07 TCGA-86-A4JF-01 7 99490316 99490316 C A TRIM4 Nonsense_Mutation p.E325* 0.28 TCGA-86-A4JF-01 7 99757730 99757730 G A GAL3ST4 Nonsense_Mutation p.Q428* 0.05 TCGA-86-A4JF-01 7 99818869 99818869 C T PVRIG Nonsense_Mutation p.R326* 0.15 TCGA-86-A4JF-01 8 103663875 103663875 A G KLF10 Missense_Mutation p.Y229H 0.09 tolerated(0.54) benign(0.001) TCGA-86-A4JF-01 8 103846976 103846976 C A AZIN1 Splice_Site p.X195_splice 0.06 TCGA-86-A4JF-01 8 104412681 104412681 G A SLC25A32 Silent p.N302N 0.09 TCGA-86-A4JF-01 8 10469773 10469773 A C RP1L1 Missense_Mutation p.V612G 0.11 benign(0.031) TCGA-86-A4JF-01 8 104898397 104898397 G A RIMS2 Missense_Mutation p.E524K 0.08 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-86-A4JF-01 8 110348394 110348394 C T ENY2 Missense_Mutation p.A15V 0.15 tolerated(0.58) benign(0.002) TCGA-86-A4JF-01 8 110510891 110510891 A T PKHD1L1 Missense_Mutation p.R3573S 0.08 deleterious(0.01) probably_damaging(0.972) TCGA-86-A4JF-01 8 113256623 113256623 C G CSMD3 Missense_Mutation p.A3468P 0.22 tolerated(0.1) benign(0.009) TCGA-86-A4JF-01 8 120940732 120940732 G T DEPTOR Missense_Mutation p.W72L 0.27 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 8 122626600 122626600 T C HAS2 Missense_Mutation p.T470A 0.11 tolerated(0.1) benign(0.146) TCGA-86-A4JF-01 8 125103712 125103712 C T FER1L6 Silent p.L1480L 0.14 TCGA-86-A4JF-01 8 125597329 125597329 T - MTSS1 Frame_Shift_Del p.R155Efs*34 0.11 TCGA-86-A4JF-01 8 128750683 128750683 C A MYC Missense_Mutation p.P74T 0.30 deleterious(0.02) probably_damaging(1) TCGA-86-A4JF-01 8 12957359 12957359 G - DLC1 Frame_Shift_Del p.S830Rfs*7 0.15 TCGA-86-A4JF-01 8 133764240 133764240 G A TMEM71 Silent p.F35F 0.12 TCGA-86-A4JF-01 8 134144055 134144055 G A TG Splice_Site p.X2621_splice 0.24 TCGA-86-A4JF-01 8 134225387 134225387 G A WISP1 Splice_Site p.X117_splice 0.11 TCGA-86-A4JF-01 8 142229761 142229761 C A SLC45A4 Missense_Mutation p.A149S 0.15 deleterious(0.03) possibly_damaging(0.498) TCGA-86-A4JF-01 8 142432240 142432240 T C PTP4A3 5'UTR 0.14 TCGA-86-A4JF-01 8 142441045 142441045 C G PTP4A3 Missense_Mutation p.I141M 0.18 deleterious(0.02) possibly_damaging(0.889) TCGA-86-A4JF-01 8 143784549 143784549 C T LY6K Silent p.S86S 0.09 TCGA-86-A4JF-01 8 143960774 143960774 G A CYP11B1 Intron 0.25 TCGA-86-A4JF-01 8 144550669 144550669 C A ZC3H3 Missense_Mutation p.R663L 0.27 deleterious(0) possibly_damaging(0.812) TCGA-86-A4JF-01 8 145006692 145006692 A G PLEC Missense_Mutation p.L755S 0.14 unknown(0) TCGA-86-A4JF-01 8 145745158 145745158 C T LRRC14 Missense_Mutation p.P17S 0.16 tolerated(0.39) benign(0.001) TCGA-86-A4JF-01 8 145753438 145753438 T C C8orf82 Missense_Mutation p.K59E 0.12 deleterious(0) possibly_damaging(0.547) TCGA-86-A4JF-01 8 145998871 145998871 G A ZNF34 Missense_Mutation p.S488F 0.10 deleterious(0) probably_damaging(0.923) TCGA-86-A4JF-01 8 146017463 146017463 C T RPL8 Missense_Mutation p.A18T 0.11 tolerated(0.09) benign(0.343) TCGA-86-A4JF-01 8 17123433 17123433 A G VPS37A Missense_Mutation p.K48R 0.09 tolerated(0.25) benign(0.288) TCGA-86-A4JF-01 8 17804812 17804812 G A PCM1 Missense_Mutation p.A301T 0.11 tolerated(0.08) probably_damaging(0.999) TCGA-86-A4JF-01 8 1833815 1833815 A T ARHGEF10 Missense_Mutation p.D375V 0.10 deleterious(0.02) probably_damaging(0.976) TCGA-86-A4JF-01 8 195577 195577 A G ZNF596 Missense_Mutation p.T244A 0.07 tolerated(0.1) benign(0.061) TCGA-86-A4JF-01 8 19694653 19694653 A G INTS10 Missense_Mutation p.K541E 0.19 tolerated(0.28) benign(0.035) TCGA-86-A4JF-01 8 20110802 20110802 T C LZTS1 Missense_Mutation p.T214A 0.15 tolerated(0.27) benign(0.101) TCGA-86-A4JF-01 8 2092607 2092607 C T MYOM2 Missense_Mutation p.T1367M 0.15 deleterious(0.01) probably_damaging(0.957) TCGA-86-A4JF-01 8 21984903 21984903 C - HR Frame_Shift_Del p.G351Vfs*12 0.09 TCGA-86-A4JF-01 8 23709044 23709044 C T STC1 Missense_Mutation p.G88R 0.07 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 8 27634626 27634626 A T ESCO2 Missense_Mutation p.E267D 0.13 tolerated(0.09) benign(0.004) TCGA-86-A4JF-01 8 27661009 27661009 T C ESCO2 3'UTR 0.17 TCGA-86-A4JF-01 8 27927171 27927171 T C NUGGC Splice_Site p.X50_splice 0.16 TCGA-86-A4JF-01 8 37730179 37730179 T A RAB11FIP1 Missense_Mutation p.Q714L 0.13 deleterious(0.01) benign(0.167) TCGA-86-A4JF-01 8 3889491 3889491 G T CSMD1 Silent p.I182I 0.08 TCGA-86-A4JF-01 8 40389620 40389620 T A ZMAT4 3'UTR 0.20 TCGA-86-A4JF-01 8 42023071 42023071 G A AP3M2 Missense_Mutation p.A266T 0.12 tolerated(0.55) benign(0.004) TCGA-86-A4JF-01 8 42329756 42329756 A G SLC20A2 Silent p.A51A 0.14 TCGA-86-A4JF-01 8 42586889 42586889 G A CHRNB3 Missense_Mutation p.A147T 0.14 deleterious(0) probably_damaging(0.953) TCGA-86-A4JF-01 8 42611336 42611336 T C CHRNA6 Missense_Mutation p.T336A 0.17 tolerated(0.16) benign(0.001) TCGA-86-A4JF-01 8 48801591 48801591 T C PRKDC Missense_Mutation p.K1421E 0.13 benign(0.001) TCGA-86-A4JF-01 8 49832877 49832877 T C SNAI2 Missense_Mutation p.Q68R 0.10 tolerated(0.54) benign(0) TCGA-86-A4JF-01 8 54866716 54866716 C T RGS20 Missense_Mutation p.A275V 0.11 tolerated(0.29) benign(0.193) TCGA-86-A4JF-01 8 67740918 67740918 G C SGK3 Silent p.L149L 0.08 TCGA-86-A4JF-01 8 68189569 68189569 T A ARFGEF1 Missense_Mutation p.Y384F 0.11 tolerated(0.7) benign(0) TCGA-86-A4JF-01 8 68189578 68189578 G C ARFGEF1 Missense_Mutation p.S381C 0.12 deleterious(0) benign(0.315) TCGA-86-A4JF-01 8 70744643 70744643 G A SLCO5A1 Missense_Mutation p.S89L 0.10 tolerated_low_confidence(0.12) benign(0.004) TCGA-86-A4JF-01 8 71068646 71068646 T A NCOA2 Missense_Mutation p.M652L 0.11 tolerated(1) benign(0.001) TCGA-86-A4JF-01 8 75227126 75227126 G A JPH1 Missense_Mutation p.A370V 0.09 deleterious(0.01) probably_damaging(0.987) TCGA-86-A4JF-01 8 77618430 77618430 G T ZFHX4 Missense_Mutation p.V703F 0.11 possibly_damaging(0.607) TCGA-86-A4JF-01 8 92406162 92406162 A T SLC26A7 Splice_Site p.X611_splice 0.22 TCGA-86-A4JF-01 8 92406193 92406193 G T SLC26A7 Nonsense_Mutation p.G621* 0.21 TCGA-86-A4JF-01 8 97345794 97345794 A - PTDSS1 Frame_Shift_Del 0.10 TCGA-86-A4JF-01 9 103054823 103054823 C T INVS Missense_Mutation p.R762W 0.12 tolerated_low_confidence(0.14) benign(0.001) TCGA-86-A4JF-01 9 103348400 103348400 G A MURC Silent p.R254R 0.13 TCGA-86-A4JF-01 9 104433006 104433006 C A GRIN3A Missense_Mutation p.S563I 0.13 deleterious(0.03) possibly_damaging(0.638) TCGA-86-A4JF-01 9 1056201 1056201 C G DMRT2 Intron 0.13 TCGA-86-A4JF-01 9 106885501 106885501 A - SMC2 Frame_Shift_Del p.T751Pfs*9 0.09 TCGA-86-A4JF-01 9 108456879 108456879 C T TMEM38B 5'UTR 0.10 TCGA-86-A4JF-01 9 111631247 111631247 C G IKBKAP 3'UTR 0.16 TCGA-86-A4JF-01 9 115449906 115449906 T A INIP Missense_Mutation p.H76L 0.10 deleterious(0.03) benign(0.003) TCGA-86-A4JF-01 9 119582992 119582992 G T ASTN2 Missense_Mutation p.S653Y 0.16 deleterious(0) unknown(0) TCGA-86-A4JF-01 9 119903658 119903658 G T ASTN2 Intron 0.21 TCGA-86-A4JF-01 9 123538385 123538385 C T FBXW2 Missense_Mutation p.E269K 0.11 deleterious(0.04) possibly_damaging(0.787) TCGA-86-A4JF-01 9 123628312 123628312 A T PHF19 Missense_Mutation p.L258Q 0.09 deleterious(0) probably_damaging(0.969) TCGA-86-A4JF-01 9 123907593 123907593 G T CNTRL Silent p.L1080L 0.12 TCGA-86-A4JF-01 9 124534997 124534997 G A DAB2IP Silent p.S702S 0.12 TCGA-86-A4JF-01 9 124801587 124801587 T C TTLL11 Missense_Mutation p.N265D 0.12 tolerated(0.08) benign(0.025) TCGA-86-A4JF-01 9 124929055 124929055 G A MORN5 Missense_Mutation p.G19D 0.11 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 9 125084910 125084910 C T MRRF 3'UTR 0.10 TCGA-86-A4JF-01 9 125552142 125552142 C T OR5C1 Nonsense_Mutation p.R311* 0.09 TCGA-86-A4JF-01 9 127674182 127674182 C A GOLGA1 Nonsense_Mutation p.E323* 0.04 TCGA-86-A4JF-01 9 129870628 129870628 C T ANGPTL2 Missense_Mutation p.R128H 0.20 deleterious(0.02) probably_damaging(0.997) TCGA-86-A4JF-01 9 129870961 129870961 A G ANGPTL2 Missense_Mutation p.M17T 0.09 tolerated_low_confidence(0.5) benign(0.001) TCGA-86-A4JF-01 9 131371236 131371236 G T SPTAN1 Silent p.R1525R 0.12 TCGA-86-A4JF-01 9 131482827 131482827 G A PKN3 Missense_Mutation p.R871H 0.13 deleterious(0.05) benign(0.051) TCGA-86-A4JF-01 9 131671401 131671401 A G LRRC8A Missense_Mutation p.Y653C 0.13 tolerated(0.1) probably_damaging(0.998) TCGA-86-A4JF-01 9 132569566 132569566 G A TOR1B Missense_Mutation p.A189T 0.07 deleterious(0.03) benign(0.017) TCGA-86-A4JF-01 9 134136225 134136225 G A FAM78A Missense_Mutation p.P279L 0.21 deleterious(0) probably_damaging(0.998) TCGA-86-A4JF-01 9 135277990 135277990 A G TTF1 Silent p.C73C 0.20 TCGA-86-A4JF-01 9 136230385 136230385 T C SURF4 Missense_Mutation p.K265R 0.17 tolerated(0.43) benign(0.01) TCGA-86-A4JF-01 9 136310876 136310876 G A ADAMTS13 Silent p.T889T 0.22 TCGA-86-A4JF-01 9 137803099 137803099 G A FCN1 Missense_Mutation p.R205C 0.12 deleterious(0.02) probably_damaging(0.931) TCGA-86-A4JF-01 9 138709898 138709898 C A CAMSAP1 Missense_Mutation p.G1399V 0.10 tolerated(0.38) benign(0.272) TCGA-86-A4JF-01 9 139404256 139404256 G A NOTCH1 Silent p.S966S 0.24 TCGA-86-A4JF-01 9 139944974 139944974 G T ENTPD2 Missense_Mutation p.P264H 0.16 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 9 140138202 140138202 T C FAM166A Missense_Mutation p.T302A 0.12 deleterious(0) probably_damaging(0.994) TCGA-86-A4JF-01 9 14146701 14146701 G A NFIB Silent p.H304H 0.15 TCGA-86-A4JF-01 9 17388159 17388159 G C CNTLN Splice_Site p.X663_splice 0.16 TCGA-86-A4JF-01 9 20912883 20912883 G A FOCAD Missense_Mutation p.E913K 0.11 deleterious(0.01) benign(0.064) TCGA-86-A4JF-01 9 21367691 21367691 C A IFNA13 Missense_Mutation p.D107Y 0.16 deleterious(0) possibly_damaging(0.453) TCGA-86-A4JF-01 9 21818190 21818190 G A MTAP Silent p.Q112Q 0.14 TCGA-86-A4JF-01 9 2635510 2635510 C T VLDLR Missense_Mutation p.T47M 0.10 deleterious(0.03) benign(0.137) TCGA-86-A4JF-01 9 27229244 27229244 T C TEK 3'UTR 0.30 TCGA-86-A4JF-01 9 33318740 33318740 G A NFX1 Missense_Mutation p.G534S 0.06 deleterious(0.04) possibly_damaging(0.826) TCGA-86-A4JF-01 9 33676042 33676043 AT - PTENP1 RNA 0.20 TCGA-86-A4JF-01 9 35618040 35618040 A G CD72 Missense_Mutation p.L54S 0.20 tolerated(0.08) possibly_damaging(0.496) TCGA-86-A4JF-01 9 35674214 35674214 G C CA9 Missense_Mutation p.E86D 0.17 tolerated_low_confidence(0.16) benign(0.217) TCGA-86-A4JF-01 9 35674215 35674215 G T CA9 Nonsense_Mutation p.E87* 0.17 TCGA-86-A4JF-01 9 35754006 35754006 G T MSMP Missense_Mutation p.Q41K 0.15 tolerated(0.05) benign(0.197) TCGA-86-A4JF-01 9 35754007 35754007 G T MSMP Missense_Mutation p.F40L 0.15 deleterious(0) probably_damaging(0.982) TCGA-86-A4JF-01 9 35811658 35811658 T C SPAG8 Missense_Mutation p.T129A 0.27 tolerated_low_confidence(0.24) unknown(0) TCGA-86-A4JF-01 9 36966713 36966713 C A PAX5 Nonsense_Mutation p.E205* 0.19 TCGA-86-A4JF-01 9 38413248 38413248 T A IGFBPL1 Missense_Mutation p.T225S 0.17 deleterious(0.03) possibly_damaging(0.73) TCGA-86-A4JF-01 9 39361294 39361294 A - SPATA31A1 Frame_Shift_Del p.S1180Afs*14 0.12 TCGA-86-A4JF-01 9 77400859 77400859 G A TRPM6 Silent p.F950F 0.11 TCGA-86-A4JF-01 9 78772027 78772027 C T PCSK5 Missense_Mutation p.T460I 0.22 deleterious(0.04) benign(0.043) TCGA-86-A4JF-01 9 79118535 79118535 G A GCNT1 Missense_Mutation p.C413Y 0.05 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 9 79520882 79520882 C G PRUNE2 5'UTR 0.09 TCGA-86-A4JF-01 9 80336356 80336356 G T GNAQ Missense_Mutation p.D321E 0.31 tolerated(0.52) benign(0.001) TCGA-86-A4JF-01 9 86905193 86905193 G A SLC28A3 Missense_Mutation p.T342M 0.12 deleterious(0) probably_damaging(0.964) TCGA-86-A4JF-01 9 88938048 88938048 T C ZCCHC6 Missense_Mutation p.M873V 0.07 tolerated(0.57) benign(0) TCGA-86-A4JF-01 9 90535905 90535905 C A SPATA31C1 RNA 0.10 TCGA-86-A4JF-01 9 90582117 90582117 T C CDK20 3'UTR 0.21 TCGA-86-A4JF-01 9 93375631 93375631 T C DIRAS2 Missense_Mutation p.E160G 0.06 deleterious(0) probably_damaging(0.917) TCGA-86-A4JF-01 9 96026304 96026304 G A WNK2 Missense_Mutation p.A1229T 0.26 unknown(0) TCGA-86-A4JF-01 9 96051651 96051651 C - WNK2 Frame_Shift_Del p.R1578Gfs*48 0.15 TCGA-86-A4JF-01 9 98248007 98248007 C T PTCH1 Missense_Mutation p.A182T 0.23 deleterious(0.02) possibly_damaging(0.459) TCGA-86-A4JF-01 X 100093251 100093251 A G CSTF2 Silent p.L545L 0.20 TCGA-86-A4JF-01 X 100382549 100382549 A - CENPI Frame_Shift_Del p.E326Rfs*2 0.15 TCGA-86-A4JF-01 X 10096093 10096093 C T WWC3 Silent p.S724S 0.24 TCGA-86-A4JF-01 X 101396215 101396215 G A TCEAL6 Missense_Mutation p.S30L 0.26 tolerated(0.36) benign(0.012) TCGA-86-A4JF-01 X 102968475 102968475 A C GLRA4 Silent p.L352L 0.34 TCGA-86-A4JF-01 X 115578013 115578013 C A SLC6A14 Missense_Mutation p.A299D 0.32 deleterious(0.01) benign(0.099) TCGA-86-A4JF-01 X 118603885 118603885 G A SLC25A5 Missense_Mutation p.A125T 0.47 deleterious(0.01) probably_damaging(0.918) TCGA-86-A4JF-01 X 118786856 118786856 C A SEPT6 Missense_Mutation p.K163N 0.24 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 X 128894498 128894498 C T XPNPEP2 Missense_Mutation p.T480I 0.14 deleterious(0) probably_damaging(1) TCGA-86-A4JF-01 X 135428208 135428208 T C GPR112 Silent p.T781T 0.48 TCGA-86-A4JF-01 X 135630823 135630823 A C VGLL1 Missense_Mutation p.N97T 0.38 tolerated(0.19) benign(0.077) TCGA-86-A4JF-01 X 135861614 135861616 TGT - ARHGEF6 In_Frame_Del p.N69del 0.32 TCGA-86-A4JF-01 X 13727626 13727626 T C RAB9A 3'UTR 0.28 TCGA-86-A4JF-01 X 142596929 142596929 T C SPANXN3 Silent p.S47S 0.42 TCGA-86-A4JF-01 X 148797770 148797770 G T MAGEA11 Silent p.S208S 0.29 TCGA-86-A4JF-01 X 152721102 152721102 G A HAUS7 Silent p.Y286Y 0.09 TCGA-86-A4JF-01 X 152845825 152845825 C T ATP2B3 3'UTR 0.50 TCGA-86-A4JF-01 X 153221812 153221812 C T HCFC1 Missense_Mutation p.G896R 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-86-A4JF-01 X 15540712 15540712 T C BMX Splice_Site p.X251_splice 0.12 TCGA-86-A4JF-01 X 17768240 17768240 G A SCML1 Missense_Mutation p.R177H 0.42 tolerated(0.26) possibly_damaging(0.642) TCGA-86-A4JF-01 X 18259366 18259366 T - SCML2 3'UTR 0.19 TCGA-86-A4JF-01 X 18622687 18622687 A G CDKL5 Missense_Mutation p.N548S 0.37 tolerated_low_confidence(0.81) benign(0.002) TCGA-86-A4JF-01 X 30260575 30260575 C T MAGEB4 Missense_Mutation p.S108F 0.25 deleterious(0.04) benign(0) TCGA-86-A4JF-01 X 35974294 35974294 T C CXorf22 Missense_Mutation p.I464T 0.19 deleterious(0) probably_damaging(0.928) TCGA-86-A4JF-01 X 47001790 47001790 C T NDUFB11 Missense_Mutation p.E140K 0.17 deleterious(0) probably_damaging(0.999) TCGA-86-A4JF-01 X 47083885 47083885 C T CDK16 Missense_Mutation p.R176C 0.19 deleterious(0) possibly_damaging(0.804) TCGA-86-A4JF-01 X 47307415 47307415 C A ZNF41 Missense_Mutation p.G585V 0.34 deleterious(0) probably_damaging(0.967) TCGA-86-A4JF-01 X 48339835 48339835 A G FTSJ1 Missense_Mutation p.T164A 0.21 tolerated(0.3) benign(0.122) TCGA-86-A4JF-01 X 53652124 53652124 G A HUWE1 Nonsense_Mutation p.R529* 0.15 TCGA-86-A4JF-01 X 54957424 54957425 - T TRO Frame_Shift_Ins p.G1424Wfs*58 0.31 TCGA-86-A4JF-01 X 73049004 73049004 G T XIST RNA 0.19 TCGA-86-A4JF-01 X 78426765 78426765 G A GPR174 Silent p.G87G 0.26 TCGA-86-A4JF-01 X 90690956 90690956 C T PABPC5 Missense_Mutation p.S127F 0.31 deleterious(0) probably_damaging(0.992) TCGA-86-A4JF-01 X 90690970 90690970 A G PABPC5 Missense_Mutation p.I132V 0.27 tolerated(0.06) probably_damaging(0.995) TCGA-86-A4JF-01 X 99662505 99662505 G - PCDH19 Frame_Shift_Del p.P364Rfs*4 0.26 TCGA-86-A4JF-01 X 99943192 99943192 T C SYTL4 Intron 0.75 TCGA-86-A4P7-01 10 114192019 114192019 G A ZDHHC6 Missense_Mutation p.L373F 0.12 tolerated(0.32) benign(0.012) TCGA-86-A4P7-01 11 46895188 46895188 G A LRP4 Intron 0.07 TCGA-86-A4P7-01 11 47189575 47189575 A C ARFGAP2 Missense_Mutation p.S364A 0.27 tolerated(0.24) benign(0.403) TCGA-86-A4P7-01 11 65113271 65113271 A - DPF2 Frame_Shift_Del p.K258Nfs*55 0.21 TCGA-86-A4P7-01 11 6654078 6654078 C T DCHS1 Missense_Mutation p.D889N 0.13 deleterious(0.01) probably_damaging(1) TCGA-86-A4P7-01 11 6661406 6661406 T A DCHS1 Missense_Mutation p.E480V 0.18 deleterious(0.03) possibly_damaging(0.646) TCGA-86-A4P7-01 11 6661975 6661975 C A DCHS1 Silent p.V290V 0.05 TCGA-86-A4P7-01 11 67219123 67219123 G A GPR152 Missense_Mutation p.P358L 0.11 deleterious_low_confidence(0.04) possibly_damaging(0.521) TCGA-86-A4P7-01 11 73941322 73941322 G A PPME1 Missense_Mutation p.G144E 0.11 tolerated(0.31) benign(0.315) TCGA-86-A4P7-01 12 1984461 1984461 T G CACNA2D4 Missense_Mutation p.S588R 0.13 deleterious(0) possibly_damaging(0.769) TCGA-86-A4P7-01 12 4479909 4479909 G A FGF23 Missense_Mutation p.T119M 0.06 tolerated(0.11) benign(0.153) TCGA-86-A4P7-01 12 72024713 72024713 G - ZFC3H1 Frame_Shift_Del p.K1165Rfs*6 0.08 TCGA-86-A4P7-01 12 72343394 72343394 G T TPH2 Missense_Mutation p.Q189H 0.08 deleterious(0.02) benign(0.002) TCGA-86-A4P7-01 12 7651575 7651575 A G CD163 Missense_Mutation p.F223L 0.06 tolerated(1) benign(0.028) TCGA-86-A4P7-01 12 81239532 81239532 G A LIN7A Nonsense_Mutation p.Q154* 0.09 TCGA-86-A4P7-01 13 46554064 46554064 C A ZC3H13 Missense_Mutation p.R599L 0.10 probably_damaging(0.993) TCGA-86-A4P7-01 14 103187693 103187693 G C RCOR1 Missense_Mutation p.E390Q 0.10 deleterious(0) possibly_damaging(0.905) TCGA-86-A4P7-01 14 105413782 105413782 G A AHNAK2 Missense_Mutation p.A2669V 0.09 possibly_damaging(0.596) TCGA-86-A4P7-01 15 85383423 85383423 C T ALPK3 Nonsense_Mutation p.Q507* 0.09 TCGA-86-A4P7-01 16 19477464 19477464 G A TMC5 Missense_Mutation p.G516R 0.07 tolerated(0.65) benign(0.004) TCGA-86-A4P7-01 16 30001125 30001125 C A TAOK2 3'Flank 0.07 TCGA-86-A4P7-01 16 4016704 4016704 T A ADCY9 Missense_Mutation p.K1045M 0.04 deleterious(0) possibly_damaging(0.589) TCGA-86-A4P7-01 16 70512186 70512186 C T FUK Nonsense_Mutation p.Q885* 0.11 TCGA-86-A4P7-01 16 81819645 81819645 G C PLCG2 Missense_Mutation p.Q17H 0.18 tolerated(0.16) possibly_damaging(0.758) TCGA-86-A4P7-01 17 29622474 29622474 C G OMG Silent p.L292L 0.15 TCGA-86-A4P7-01 17 33481605 33481605 C A UNC45B Missense_Mutation p.L162I 0.10 deleterious(0) possibly_damaging(0.893) TCGA-86-A4P7-01 17 34235584 34235584 G A AC015849.16 RNA 0.13 TCGA-86-A4P7-01 17 43194011 43194011 C T PLCD3 Silent p.L467L 0.26 TCGA-86-A4P7-01 17 48356303 48356303 C T TMEM92 Silent p.I104I 0.12 TCGA-86-A4P7-01 17 7577082 7577082 C T TP53 Missense_Mutation p.E286K 0.09 deleterious(0) probably_damaging(0.982) TCGA-86-A4P7-01 17 79805209 79805209 C G P4HB Silent p.R213R 0.15 TCGA-86-A4P7-01 19 16222608 16222608 C G RAB8A 5'UTR 0.12 TCGA-86-A4P7-01 19 54444735 54444735 G A CACNG7 Missense_Mutation p.V146M 0.13 deleterious(0) possibly_damaging(0.654) TCGA-86-A4P7-01 19 54849841 54849841 C A LILRA4 Missense_Mutation p.D61Y 0.07 tolerated(1) benign(0.011) TCGA-86-A4P7-01 19 57909876 57909876 C G ZNF548 Nonsense_Mutation p.S86* 0.09 TCGA-86-A4P7-01 19 9272147 9272147 G C ZNF317 3'UTR 0.05 TCGA-86-A4P7-01 1 12025620 12025620 C A PLOD1 Missense_Mutation p.N518K 0.12 tolerated(0.09) possibly_damaging(0.547) TCGA-86-A4P7-01 1 200730067 200730067 A G CAMSAP2 Silent p.L80L 0.06 TCGA-86-A4P7-01 1 235929473 235929473 C G LYST Missense_Mutation p.L2009F 0.07 deleterious(0) probably_damaging(0.996) TCGA-86-A4P7-01 1 38082234 38082234 G A RSPO1 Missense_Mutation p.R70C 0.06 deleterious(0) probably_damaging(0.987) TCGA-86-A4P7-01 1 40434239 40434239 A T MFSD2A Splice_Site p.X464_splice 0.07 TCGA-86-A4P7-01 1 46726568 46726568 T A RAD54L Missense_Mutation p.V216E 0.10 deleterious(0) probably_damaging(0.937) TCGA-86-A4P7-01 1 74507072 74507072 G A LRRIQ3 Missense_Mutation p.R515C 0.05 deleterious(0.01) possibly_damaging(0.891) TCGA-86-A4P7-01 20 1456769 1456769 G A SIRPB2 3'UTR 0.07 TCGA-86-A4P7-01 21 34799307 34799307 G A IFNGR2 Missense_Mutation p.V177I 0.06 deleterious(0.04) benign(0.335) TCGA-86-A4P7-01 22 22036746 22036746 C T PPIL2 Silent p.I136I 0.07 TCGA-86-A4P7-01 22 39626149 39626149 C T PDGFB Missense_Mutation p.E181K 0.12 deleterious(0.01) benign(0.358) TCGA-86-A4P7-01 2 102959788 102959788 G C IL1RL1 Missense_Mutation p.E295Q 0.07 deleterious(0.01) benign(0.079) TCGA-86-A4P7-01 2 105859461 105859461 C T GPR45 3'UTR 0.10 TCGA-86-A4P7-01 2 11780577 11780577 C G GREB1 Missense_Mutation p.I1949M 0.05 deleterious(0) possibly_damaging(0.776) TCGA-86-A4P7-01 2 182767191 182767191 G C SSFA2 Missense_Mutation p.E471Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-86-A4P7-01 2 241494421 241494421 C T ANKMY1 5'UTR 0.10 TCGA-86-A4P7-01 2 42490382 42490382 A - EML4 Frame_Shift_Del p.N193Ifs*12 0.14 TCGA-86-A4P7-01 2 50765541 50765541 T C NRXN1 Missense_Mutation p.T705A 0.08 tolerated(1) benign(0.003) TCGA-86-A4P7-01 2 74719463 74719463 G A TTC31 Missense_Mutation p.R351Q 0.11 tolerated(0.12) benign(0.096) TCGA-86-A4P7-01 2 86310235 86310235 C A POLR1A Nonsense_Mutation p.E263* 0.09 TCGA-86-A4P7-01 2 89976407 89976407 G T IGKV2D-30 Missense_Mutation p.G93V 0.07 deleterious(0.01) benign(0.423) TCGA-86-A4P7-01 3 183504042 183504042 G A YEATS2 Missense_Mutation p.A956T 0.09 deleterious_low_confidence(0.04) benign(0.164) TCGA-86-A4P7-01 3 38048073 38048073 G C VILL Missense_Mutation p.R780T 0.18 tolerated(0.43) benign(0.001) TCGA-86-A4P7-01 4 109543286 109543286 G A RPL34 Missense_Mutation p.V31I 0.14 tolerated(0.08) benign(0.017) TCGA-86-A4P7-01 5 140188757 140188757 C T PCDHA4 Missense_Mutation p.T662M 0.11 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-86-A4P7-01 5 149748340 149748340 C T TCOF1 Missense_Mutation p.T147M 0.11 tolerated(0.09) benign(0.012) TCGA-86-A4P7-01 5 180582408 180582408 G A OR2V2 Missense_Mutation p.D156N 0.05 tolerated(0.11) probably_damaging(1) TCGA-86-A4P7-01 5 82875874 82875874 C G VCAN Missense_Mutation p.S3319C 0.05 deleterious(0) probably_damaging(0.999) TCGA-86-A4P7-01 6 129826356 129826356 G A LAMA2 Missense_Mutation p.M2853I 0.17 tolerated(0.13) benign(0.001) TCGA-86-A4P7-01 6 130762737 130762737 G T TMEM200A Missense_Mutation p.L390F 0.11 tolerated(0.21) benign(0.001) TCGA-86-A4P7-01 6 26468172 26468172 G A BTN2A1 Intron 0.17 TCGA-86-A4P7-01 6 33036445 33036445 C T HLA-DPA1 Silent p.R255R 0.11 TCGA-86-A4P7-01 7 131864525 131864525 G A PLXNA4 Silent p.R1265R 0.08 TCGA-86-A4P7-01 7 148963782 148963782 C G ZNF783 Missense_Mutation p.I127M 0.07 deleterious(0) probably_damaging(0.94) TCGA-86-A4P7-01 7 149509712 149509712 C G SSPO RNA 0.05 TCGA-86-A4P7-01 7 151699869 151699869 C T GALNTL5 Silent p.A243A 0.10 TCGA-86-A4P7-01 7 26251377 26251377 G T CBX3 Splice_Site p.X142_splice 0.07 TCGA-86-A4P7-01 7 41739639 41739639 C A INHBA Nonsense_Mutation p.E112* 0.10 TCGA-86-A4P7-01 7 55241679 55241681 AAC - EGFR In_Frame_Del p.E709_T710delinsD 0.12 TCGA-86-A4P7-01 7 6730799 6730799 G C ZNF12 Missense_Mutation p.L592V 0.11 deleterious(0.02) probably_damaging(0.923) TCGA-86-A4P7-01 8 100479817 100479817 C G VPS13B Silent p.L1207L 0.12 TCGA-86-A4P7-01 8 144621349 144621349 G A ZC3H3 Missense_Mutation p.S63F 0.07 tolerated(0.17) probably_damaging(0.944) TCGA-86-A4P7-01 9 119567984 119567984 C T ASTN2 Missense_Mutation p.G724R 0.11 tolerated(0.15) unknown(0) TCGA-86-A4P7-01 9 137734093 137734093 G A COL5A1 Missense_Mutation p.G1821S 0.14 unknown(0) TCGA-86-A4P7-01 X 100509465 100509465 T C DRP2 Missense_Mutation p.F677L 0.10 deleterious(0.03) benign(0.039) TCGA-86-A4P7-01 X 118602435 118602435 C G SLC25A5 5'UTR 0.23 TCGA-86-A4P7-01 X 123657297 123657297 G C TENM1 Missense_Mutation p.P984A 0.05 deleterious(0.01) possibly_damaging(0.689) TCGA-86-A4P7-01 X 129270622 129270622 C G AIFM1 Missense_Mutation p.R387T 0.15 deleterious(0.04) benign(0.03) TCGA-86-A4P7-01 X 50146580 50146580 G C DGKK RNA 0.07 TCGA-86-A4P7-01 X 54837360 54837360 G A MAGED2 Missense_Mutation p.R215H 0.15 tolerated(0.06) benign(0.022) TCGA-86-A4P7-01 X 54841756 54841756 G A MAGED2 Missense_Mutation p.E488K 0.07 tolerated(0.34) benign(0.32) TCGA-86-A4P7-01 X 67283861 67283861 A T OPHN1 Missense_Mutation p.C665S 0.07 tolerated(0.45) benign(0) TCGA-86-A4P8-01 14 93685006 93685006 G A UBR7 Silent p.K245K 0.06 TCGA-86-A4P8-01 6 41126487 41126487 T A TREM2 3'UTR 0.06 TCGA-91-6828-01 10 105362429 105362429 C G SH3PXD2A Missense_Mutation p.S821T 0.13 tolerated(1) possibly_damaging(0.667) TCGA-91-6828-01 10 108337046 108337046 G T SORCS1 Intron 0.34 TCGA-91-6828-01 10 135367822 135367822 G T SYCE1 3'Flank 0.24 TCGA-91-6828-01 10 18795465 18795465 C A CACNB2 Missense_Mutation p.P220H 0.39 deleterious(0) probably_damaging(0.999) TCGA-91-6828-01 10 27375513 27375513 T G ANKRD26 Missense_Mutation p.K222Q 0.23 tolerated(0.42) benign(0.23) TCGA-91-6828-01 10 45498738 45498738 G C ZNF22 5'UTR 0.30 TCGA-91-6828-01 10 47087519 47087519 C A NPY4R Missense_Mutation p.R246S 0.13 tolerated(0.24) benign(0.175) TCGA-91-6828-01 10 5788306 5788306 A G FAM208B Silent p.Q974Q 0.06 TCGA-91-6828-01 10 70202766 70202766 G A DNA2 Silent p.F527F 0.24 TCGA-91-6828-01 10 92616928 92616928 C A HTR7 Silent p.T167T 0.71 TCGA-91-6828-01 10 98078206 98078206 C A DNTT Missense_Mutation p.L101I 0.25 tolerated(0.1) benign(0.091) TCGA-91-6828-01 10 99969246 99969246 A G R3HCC1L Missense_Mutation p.T459A 0.10 tolerated(0.16) benign(0.025) TCGA-91-6828-01 11 115049441 115049441 C A CADM1 Missense_Mutation p.G378V 0.07 deleterious(0) probably_damaging(0.998) TCGA-91-6828-01 11 118380757 118380758 - A KMT2A Frame_Shift_Ins p.P3668Tfs*8 0.30 TCGA-91-6828-01 11 11976665 11976665 G T USP47 Missense_Mutation p.V1215F 0.31 deleterious(0.01) possibly_damaging(0.809) TCGA-91-6828-01 11 123597329 123597329 G A ZNF202 Silent p.A441A 0.32 TCGA-91-6828-01 11 124740965 124740965 C A ROBO3 Missense_Mutation p.S363R 0.32 deleterious(0) possibly_damaging(0.454) TCGA-91-6828-01 11 126215396 126215396 T C DCPS Missense_Mutation p.V301A 0.15 deleterious(0) probably_damaging(0.998) TCGA-91-6828-01 11 129784679 129784679 G T PRDM10 Missense_Mutation p.Q925K 0.38 deleterious_low_confidence(0.01) benign(0.124) TCGA-91-6828-01 11 134131719 134131719 G T ACAD8 Nonsense_Mutation p.E343* 0.31 TCGA-91-6828-01 11 18047172 18047172 C A TPH1 Missense_Mutation p.G294C 0.32 deleterious(0) probably_damaging(0.999) TCGA-91-6828-01 11 46455071 46455071 G A AMBRA1 Nonsense_Mutation p.Q887* 0.29 TCGA-91-6828-01 11 5080209 5080209 G C OR52E2 Missense_Mutation p.L217V 0.05 tolerated(0.59) benign(0.039) TCGA-91-6828-01 11 55038382 55038382 C A TRIM48 3'UTR 0.23 TCGA-91-6828-01 11 60184410 60184410 C A MS4A14 Missense_Mutation p.H690N 0.27 tolerated(0.22) benign(0.127) TCGA-91-6828-01 11 60231728 60231728 C T MS4A1 Intron 0.30 TCGA-91-6828-01 11 62416483 62416483 C A INTS5 Nonsense_Mutation p.G357* 0.30 TCGA-91-6828-01 11 62519947 62519947 A T ZBTB3 Missense_Mutation p.L447Q 0.27 tolerated(0.05) benign(0.424) TCGA-91-6828-01 11 62568674 62568674 C A NXF1 Splice_Site p.X267_splice 0.22 TCGA-91-6828-01 11 62571288 62571288 G A NXF1 Missense_Mutation p.A64V 0.10 tolerated(1) benign(0.001) TCGA-91-6828-01 11 65269682 65269682 G C MALAT1 RNA 0.23 TCGA-91-6828-01 11 65743992 65743992 C G SART1 Missense_Mutation p.P567A 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-91-6828-01 11 70507767 70507767 C G SHANK2 Missense_Mutation p.E625Q 0.11 deleterious(0.03) benign(0.346) TCGA-91-6828-01 11 72422487 72422487 A - ARAP1 Frame_Shift_Del p.F360Lfs*31 0.25 TCGA-91-6828-01 11 7530834 7530834 C A OLFML1 Silent p.I208I 0.38 TCGA-91-6828-01 11 76371671 76371671 C G LRRC32 Missense_Mutation p.L322F 0.32 deleterious(0) probably_damaging(0.999) TCGA-91-6828-01 11 77635773 77635773 T A INTS4 Intron 0.18 TCGA-91-6828-01 11 7981515 7981515 A - NLRP10 Frame_Shift_Del p.F548Lfs*8 0.15 TCGA-91-6828-01 12 10467407 10467407 A T KLRD1 3'UTR 0.36 TCGA-91-6828-01 12 109845649 109845649 G - MYO1H Frame_Shift_Del p.A347Qfs*20 0.24 TCGA-91-6828-01 12 114793673 114793673 G T TBX5 Nonsense_Mutation p.Y407* 0.25 TCGA-91-6828-01 12 122079355 122079355 G A ORAI1 Missense_Mutation p.A240T 0.12 tolerated(0.06) benign(0.089) TCGA-91-6828-01 12 122657105 122657105 G A IL31 Nonsense_Mutation p.Q117* 0.14 TCGA-91-6828-01 12 123419912 123419912 G A ABCB9 Silent p.L604L 0.06 TCGA-91-6828-01 12 133438086 133438086 C A CHFR Missense_Mutation p.D252Y 0.27 deleterious(0) possibly_damaging(0.643) TCGA-91-6828-01 12 21471751 21471751 G C SLCO1A2 Missense_Mutation p.S56C 0.28 deleterious(0) probably_damaging(0.98) TCGA-91-6828-01 12 22068791 22068791 C G ABCC9 Missense_Mutation p.Q209H 0.33 deleterious(0) probably_damaging(0.951) TCGA-91-6828-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.47 deleterious(0) possibly_damaging(0.479) TCGA-91-6828-01 12 41582588 41582588 C A PDZRN4 Silent p.R111R 0.44 TCGA-91-6828-01 12 52843583 52843583 G C KRT6B Missense_Mutation p.L291V 0.04 deleterious(0) probably_damaging(0.955) TCGA-91-6828-01 12 53899014 53899014 G A TARBP2 Missense_Mutation p.E237K 0.06 tolerated(0.18) possibly_damaging(0.63) TCGA-91-6828-01 12 57972080 57972080 C A KIF5A Silent p.S831S 0.31 TCGA-91-6828-01 12 6981812 6981812 G T SPSB2 Nonsense_Mutation p.S85* 0.43 TCGA-91-6828-01 12 75444758 75444758 C A KCNC2 Missense_Mutation p.V343L 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-91-6828-01 12 80661044 80661044 G A OTOGL Missense_Mutation p.R792H 0.29 tolerated(0.55) benign(0.021) TCGA-91-6828-01 12 9231857 9231857 C A A2M Missense_Mutation p.R1034S 0.24 tolerated(0.3) benign(0.014) TCGA-91-6828-01 12 977030 977030 A G WNK1 Intron 0.32 TCGA-91-6828-01 13 109699269 109699269 G A MYO16 Missense_Mutation p.M912I 0.10 tolerated(0.3) benign(0.158) TCGA-91-6828-01 13 110813626 110813626 T A COL4A1 Missense_Mutation p.D1518V 0.11 unknown(0) TCGA-91-6828-01 13 110864792 110864792 G - COL4A1 Frame_Shift_Del p.P120Qfs*36 0.22 TCGA-91-6828-01 13 19751729 19751729 G T TUBA3C Missense_Mutation p.L132M 0.21 deleterious_low_confidence(0.01) probably_damaging(0.972) TCGA-91-6828-01 13 26620766 26620766 G A SHISA2 Missense_Mutation p.P258L 0.27 tolerated(0.23) probably_damaging(0.998) TCGA-91-6828-01 13 38148759 38148760 GG T POSTN Frame_Shift_Del p.P680Kfs*5 0.22 TCGA-91-6828-01 13 38320115 38320115 G T TRPC4 Missense_Mutation p.L286I 0.04 deleterious(0) probably_damaging(0.999) TCGA-91-6828-01 13 52598305 52598305 T G ALG11 Missense_Mutation p.F147V 0.06 deleterious(0) possibly_damaging(0.688) TCGA-91-6828-01 13 70456453 70456453 G A KLHL1 Missense_Mutation p.L397F 0.05 deleterious(0) probably_damaging(0.996) TCGA-91-6828-01 13 96601613 96601613 G A UGGT2 Silent p.S477S 0.35 TCGA-91-6828-01 14 102508450 102508450 C T DYNC1H1 Missense_Mutation p.S4068L 0.35 probably_damaging(0.944) TCGA-91-6828-01 14 103371649 103371649 C T TRAF3 Missense_Mutation p.A412V 0.28 tolerated(0.08) possibly_damaging(0.668) TCGA-91-6828-01 14 106815880 106815880 C G IGHV3-33 Missense_Mutation p.E65Q 0.58 tolerated_low_confidence(0.12) possibly_damaging(0.662) TCGA-91-6828-01 14 19378063 19378063 C A OR11H12 Missense_Mutation p.A157D 0.06 tolerated(0.18) benign(0.158) TCGA-91-6828-01 14 21502073 21502073 G T RNASE13 Nonsense_Mutation p.Y125* 0.11 TCGA-91-6828-01 14 21795901 21795901 G T RPGRIP1 Missense_Mutation p.G944W 0.29 deleterious(0.01) possibly_damaging(0.688) TCGA-91-6828-01 14 33292102 33292102 G A AKAP6 Missense_Mutation p.D1695N 0.05 deleterious(0) possibly_damaging(0.735) TCGA-91-6828-01 14 35554835 35554835 T G PPP2R3C Silent p.A441A 0.21 TCGA-91-6828-01 14 47351411 47351411 C A MDGA2 Missense_Mutation p.R751L 0.20 deleterious(0.05) probably_damaging(0.91) TCGA-91-6828-01 14 51058328 51058328 G A ATL1 Missense_Mutation p.A165T 0.24 deleterious(0) probably_damaging(0.97) TCGA-91-6828-01 14 55231189 55231189 G T SAMD4A Missense_Mutation p.L509F 0.38 deleterious(0) possibly_damaging(0.878) TCGA-91-6828-01 14 66209192 66209192 G T FUT8 3'UTR 0.27 TCGA-91-6828-01 14 93199091 93199091 C A LGMN Missense_Mutation p.G14V 0.21 tolerated(0.14) benign(0.046) TCGA-91-6828-01 14 95030054 95030054 C A SERPINA4 Missense_Mutation p.P79T 0.35 deleterious(0) probably_damaging(0.992) TCGA-91-6828-01 15 101464888 101464888 G C LRRK1 Silent p.P17P 0.30 TCGA-91-6828-01 15 32915737 32915737 C A ARHGAP11A Missense_Mutation p.T82N 0.07 deleterious(0) probably_damaging(0.994) TCGA-91-6828-01 15 74290522 74290522 G T PML Missense_Mutation p.A103S 0.15 tolerated(0.32) benign(0.141) TCGA-91-6828-01 15 80260011 80260011 A T BCL2A1 Intron 0.22 TCGA-91-6828-01 15 88669523 88669523 G C NTRK3 Missense_Mutation p.R459G 0.29 deleterious(0.01) possibly_damaging(0.691) TCGA-91-6828-01 15 89450563 89450563 A G MFGE8 Missense_Mutation p.S84P 0.13 deleterious(0.01) possibly_damaging(0.865) TCGA-91-6828-01 15 89698682 89698682 A G ABHD2 Missense_Mutation p.K152R 0.13 tolerated(0.67) benign(0.001) TCGA-91-6828-01 16 17228489 17228489 C G XYLT1 Missense_Mutation p.G623A 0.28 deleterious(0.01) probably_damaging(0.986) TCGA-91-6828-01 16 20996905 20996905 C T DNAH3 Missense_Mutation p.V2387M 0.05 tolerated(0.12) benign(0.045) TCGA-91-6828-01 16 21698947 21698947 C G OTOA Missense_Mutation p.R205G 0.29 tolerated(0.32) benign(0.005) TCGA-91-6828-01 16 27459937 27459937 A G IL21R Missense_Mutation p.Y317C 0.14 tolerated(0.16) benign(0.009) TCGA-91-6828-01 16 28550162 28550162 T G NUPR1 Missense_Mutation p.S23R 0.23 tolerated(0.34) possibly_damaging(0.504) TCGA-91-6828-01 16 29934554 29934554 T G KCTD13 Missense_Mutation p.Y124S 0.23 deleterious(0) probably_damaging(0.988) TCGA-91-6828-01 16 30041831 30041831 C A FAM57B Silent p.V6V 0.38 TCGA-91-6828-01 16 30667570 30667570 G A PRR14 Missense_Mutation p.E566K 0.07 deleterious(0.03) probably_damaging(0.991) TCGA-91-6828-01 16 31157117 31157117 G C PRSS36 Missense_Mutation p.T238S 0.24 tolerated(0.14) possibly_damaging(0.846) TCGA-91-6828-01 16 50388360 50388360 T C BRD7 Missense_Mutation p.N141S 0.08 tolerated(0.31) benign(0.02) TCGA-91-6828-01 16 75269174 75269174 A T BCAR1 Silent p.L587L 0.29 TCGA-91-6828-01 16 87743082 87743082 C A KLHDC4 Silent p.R412R 0.32 TCGA-91-6828-01 16 89998933 89998933 G T TUBB3 Intron 0.23 TCGA-91-6828-01 17 12666716 12666716 C G MYOCD Missense_Mutation p.P906A 0.08 tolerated(0.08) benign(0.024) TCGA-91-6828-01 17 28525391 28525391 A T SLC6A4 3'UTR 0.16 TCGA-91-6828-01 17 38922678 38922678 A T KRT26 3'UTR 0.28 TCGA-91-6828-01 17 39633867 39633867 G A KRT35 Missense_Mutation p.R375W 0.06 deleterious(0.02) probably_damaging(1) TCGA-91-6828-01 17 49079164 49079164 C G SPAG9 Missense_Mutation p.E507Q 0.11 deleterious(0) probably_damaging(1) TCGA-91-6828-01 17 54230859 54230859 C T ANKFN1 5'UTR 0.35 TCGA-91-6828-01 17 59967149 59967149 A G INTS2 Missense_Mutation p.L669S 0.39 tolerated(0.05) probably_damaging(0.993) TCGA-91-6828-01 17 65871782 65871782 G T BPTF Intron 0.30 TCGA-91-6828-01 17 74473792 74473792 C A RHBDF2 Nonsense_Mutation p.E279* 0.39 TCGA-91-6828-01 17 77709206 77709206 G A ENPP7 Missense_Mutation p.R255Q 0.31 tolerated(0.4) benign(0.007) TCGA-91-6828-01 17 79094822 79094822 C G AATK Missense_Mutation p.G972R 0.23 tolerated(0.18) possibly_damaging(0.649) TCGA-91-6828-01 17 80436742 80436742 C T NARF Missense_Mutation p.S196F 0.27 deleterious(0.01) possibly_damaging(0.548) TCGA-91-6828-01 18 13387596 13387596 C T LDLRAD4 5'UTR 0.26 TCGA-91-6828-01 18 19345792 19345792 C T MIB1 Nonsense_Mutation p.R97* 0.16 TCGA-91-6828-01 18 19997690 19997690 A G CTAGE1 Silent p.L29L 0.25 TCGA-91-6828-01 18 28574418 28574418 A C DSC3 Intron 0.26 TCGA-91-6828-01 18 30091910 30091910 A G WBP11P1 RNA 0.28 TCGA-91-6828-01 18 31324042 31324042 C A ASXL3 Missense_Mutation p.H1410Q 0.22 benign(0.021) TCGA-91-6828-01 18 34850743 34850743 G T CELF4 Missense_Mutation p.H363N 0.22 tolerated(0.32) possibly_damaging(0.515) TCGA-91-6828-01 19 11303645 11303645 C A KANK2 Missense_Mutation p.G371C 0.30 deleterious(0.02) possibly_damaging(0.86) TCGA-91-6828-01 19 12461717 12461717 C A ZNF442 Nonsense_Mutation p.E228* 0.23 TCGA-91-6828-01 19 12986926 12986926 G A DNASE2 Missense_Mutation p.R321W 0.15 deleterious(0) probably_damaging(1) TCGA-91-6828-01 19 14743801 14743801 C G EMR3 Missense_Mutation p.L525F 0.24 deleterious(0.03) benign(0.114) TCGA-91-6828-01 19 19760641 19760641 C A ATP13A1 Missense_Mutation p.G815V 0.10 deleterious(0) possibly_damaging(0.884) TCGA-91-6828-01 19 30498451 30498451 G C URI1 Missense_Mutation p.D198H 0.14 deleterious(0.02) possibly_damaging(0.614) TCGA-91-6828-01 19 30934761 30934761 G T ZNF536 Missense_Mutation p.G98W 0.17 deleterious(0) probably_damaging(1) TCGA-91-6828-01 19 37854368 37854368 G T HKR1 Missense_Mutation p.E557D 0.39 tolerated(0.08) benign(0.048) TCGA-91-6828-01 19 41782090 41782090 G T HNRNPUL1 Missense_Mutation p.A225S 0.27 tolerated(1) unknown(0) TCGA-91-6828-01 19 42867243 42867243 G T MEGF8 Missense_Mutation p.W1967C 0.32 deleterious(0) probably_damaging(0.994) TCGA-91-6828-01 19 43258444 43258444 C T PSG8 3'UTR 0.13 TCGA-91-6828-01 19 43698709 43698709 G C PSG4 Silent p.T342T 0.27 TCGA-91-6828-01 19 44792687 44792687 T C ZNF235 Missense_Mutation p.S301G 0.07 tolerated(0.2) benign(0) TCGA-91-6828-01 19 46326729 46326729 G C SYMPK Silent p.V867V 0.09 TCGA-91-6828-01 19 50979147 50979147 C T FAM71E1 Silent p.Q101Q 0.59 TCGA-91-6828-01 19 51379887 51379887 G T KLK2 Missense_Mutation p.M122I 0.40 deleterious(0) probably_damaging(0.992) TCGA-91-6828-01 19 51768813 51768813 C A SIGLECL1 Missense_Mutation p.L72I 0.14 deleterious(0.01) probably_damaging(0.935) TCGA-91-6828-01 19 55494060 55494060 C A NLRP2 Missense_Mutation p.L332M 0.18 deleterious(0) probably_damaging(1) TCGA-91-6828-01 19 58262174 58262174 G A AC003006.7 Missense_Mutation p.V19M 0.07 deleterious(0.03) possibly_damaging(0.721) TCGA-91-6828-01 19 58287980 58287980 C A ZNF586 Missense_Mutation p.Q36K 0.17 deleterious(0) probably_damaging(0.996) TCGA-91-6828-01 19 58439157 58439157 T A ZNF418 Missense_Mutation p.Y131F 0.09 tolerated(0.06) possibly_damaging(0.899) TCGA-91-6828-01 19 6731116 6731116 C T GPR108 Missense_Mutation p.V481M 0.13 tolerated(0.11) possibly_damaging(0.852) TCGA-91-6828-01 19 7754258 7754258 G A FCER2 Missense_Mutation p.R263W 0.25 tolerated(0.15) benign(0.405) TCGA-91-6828-01 19 8550609 8550609 G A HNRNPM Missense_Mutation p.E433K 0.08 tolerated(0.51) benign(0.022) TCGA-91-6828-01 19 9048993 9048993 G C MUC16 Missense_Mutation p.P10880A 0.19 benign(0) TCGA-91-6828-01 19 9213076 9213076 G T OR7G2 Missense_Mutation p.P303T 0.29 tolerated(0.56) benign(0.108) TCGA-91-6828-01 1 100572478 100572478 A G SASS6 Silent p.N466N 0.16 TCGA-91-6828-01 1 113269262 113269262 G T FAM19A3 Missense_Mutation p.S157I 0.23 tolerated_low_confidence(0.25) benign(0.033) TCGA-91-6828-01 1 120166700 120166700 C G ZNF697 Missense_Mutation p.G89A 0.16 tolerated_low_confidence(0.07) benign(0.02) TCGA-91-6828-01 1 151820280 151820280 G A THEM5 Nonsense_Mutation p.Q212* 0.41 TCGA-91-6828-01 1 154530853 154530853 G A UBE2Q1 Silent p.F59F 0.33 TCGA-91-6828-01 1 155237843 155237843 T C CLK2 Missense_Mutation p.N209S 0.40 deleterious(0.03) probably_damaging(0.969) TCGA-91-6828-01 1 158152851 158152851 G T CD1D Missense_Mutation p.R264L 0.34 deleterious(0.03) probably_damaging(0.932) TCGA-91-6828-01 1 158725166 158725166 G T OR6K6 Missense_Mutation p.E187D 0.32 deleterious(0.01) possibly_damaging(0.83) TCGA-91-6828-01 1 160063849 160063849 G T IGSF8 Silent p.G185G 0.06 TCGA-91-6828-01 1 163039313 163039313 G C RGS4 Missense_Mutation p.L110F 0.07 deleterious_low_confidence(0.01) probably_damaging(0.916) TCGA-91-6828-01 1 171504670 171504670 G T PRRC2C Silent p.P657P 0.24 TCGA-91-6828-01 1 176845701 176845701 G A ASTN1 Silent p.C1145C 0.27 TCGA-91-6828-01 1 176927584 176927584 G T ASTN1 Missense_Mutation p.P545T 0.24 deleterious(0) probably_damaging(0.971) TCGA-91-6828-01 1 190067324 190067324 G T BRINP3 Missense_Mutation p.R709S 0.29 deleterious(0) probably_damaging(0.995) TCGA-91-6828-01 1 201293709 201293709 G T PKP1 Missense_Mutation p.G633W 0.33 deleterious(0) probably_damaging(0.969) TCGA-91-6828-01 1 201355939 201355943 AGGAC GGAT LAD1 Frame_Shift_Del p.S184Pfs*35 0.19 TCGA-91-6828-01 1 21050589 21050589 C T SH2D5 Silent p.S262S 0.17 TCGA-91-6828-01 1 236761272 236761272 C A HEATR1 Missense_Mutation p.G170V 0.31 deleterious(0) probably_damaging(1) TCGA-91-6828-01 1 237789031 237789031 C A RYR2 Silent p.S2031S 0.24 TCGA-91-6828-01 1 248005039 248005039 G A OR11L1 Nonsense_Mutation p.R54* 0.19 TCGA-91-6828-01 1 248224863 248224863 A C OR2L3 Missense_Mutation p.K294Q 0.24 deleterious(0.01) possibly_damaging(0.842) TCGA-91-6828-01 1 248616539 248616539 C G OR2T2 Silent p.V147V 0.17 TCGA-91-6828-01 1 28818172 28818172 G T PHACTR4 Missense_Mutation p.R640M 0.29 deleterious(0) probably_damaging(0.924) TCGA-91-6828-01 1 39852909 39852909 C T MACF1 Nonsense_Mutation p.Q2737* 0.12 TCGA-91-6828-01 1 45473082 45473082 G A HECTD3 Intron 0.27 TCGA-91-6828-01 1 6655584 6655584 C A KLHL21 Silent p.P487P 0.25 TCGA-91-6828-01 1 76387904 76387904 A G ASB17 Missense_Mutation p.I181T 0.22 tolerated(0.37) benign(0.007) TCGA-91-6828-01 1 82456564 82456564 A T LPHN2 Missense_Mutation p.Y1316F 0.07 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-91-6828-01 1 8390292 8390292 G A SLC45A1 Missense_Mutation p.V247M 0.06 tolerated(0.29) probably_damaging(0.951) TCGA-91-6828-01 1 91403192 91403192 T A ZNF644 Missense_Mutation p.M1180L 0.16 tolerated(1) benign(0) TCGA-91-6828-01 20 30436163 30436163 C A FOXS1 5'Flank 0.56 TCGA-91-6828-01 20 35060507 35060507 C T DLGAP4 Silent p.A129A 0.09 TCGA-91-6828-01 20 35627148 35627148 A T RBL1 3'UTR 0.45 TCGA-91-6828-01 20 37547132 37547132 G T PPP1R16B Silent p.T509T 0.50 TCGA-91-6828-01 20 43929581 43929581 G A MATN4 Missense_Mutation p.R320C 0.38 possibly_damaging(0.761) TCGA-91-6828-01 20 55027049 55027049 C A CASS4 Missense_Mutation p.P273T 0.17 deleterious(0) possibly_damaging(0.607) TCGA-91-6828-01 20 55027050 55027050 C A CASS4 Missense_Mutation p.P273H 0.17 deleterious(0) probably_damaging(0.968) TCGA-91-6828-01 20 57876513 57876513 C T EDN3 Missense_Mutation p.S34F 0.71 deleterious(0) benign(0.386) TCGA-91-6828-01 20 61430850 61430850 C G MRGBP Missense_Mutation p.S157C 0.05 deleterious(0.05) benign(0.004) TCGA-91-6828-01 21 10908861 10908861 T C TPTE Missense_Mutation p.Y495C 0.04 deleterious(0) probably_damaging(0.951) TCGA-91-6828-01 21 16339433 16339433 C A NRIP1 Missense_Mutation p.G361C 0.33 deleterious(0.02) possibly_damaging(0.653) TCGA-91-6828-01 21 19687463 19687463 C A TMPRSS15 Missense_Mutation p.V678L 0.10 deleterious(0.04) benign(0.143) TCGA-91-6828-01 21 32559330 32559330 T A TIAM1 Missense_Mutation p.L883F 0.38 deleterious(0) probably_damaging(0.987) TCGA-91-6828-01 21 37623551 37623551 G C DOPEY2 Missense_Mutation p.R1697T 0.24 deleterious(0.01) benign(0.06) TCGA-91-6828-01 21 48064292 48064292 G T PRMT2 Silent p.A73A 0.44 TCGA-91-6828-01 22 18301725 18301725 C A MICAL3 Missense_Mutation p.R1234S 0.25 benign(0.118) TCGA-91-6828-01 22 23237608 23237608 C T IGLL5 Missense_Mutation p.L127F 0.26 tolerated_low_confidence(0.16) possibly_damaging(0.479) TCGA-91-6828-01 22 29881765 29881765 C A NEFH Silent p.A379A 0.22 TCGA-91-6828-01 22 30688782 30688782 C A TBC1D10A Missense_Mutation p.R377L 0.12 deleterious(0.03) benign(0.018) TCGA-91-6828-01 22 37333578 37333578 C A CSF2RB Silent p.A576A 0.24 TCGA-91-6828-01 22 38620938 38620938 T A TMEM184B Missense_Mutation p.H279L 0.26 tolerated(0.39) benign(0.001) TCGA-91-6828-01 22 40661419 40661419 C T TNRC6B Silent p.P395P 0.24 TCGA-91-6828-01 22 41253212 41253212 G C XPNPEP3 Missense_Mutation p.K9N 0.26 tolerated_low_confidence(0.26) benign(0.103) TCGA-91-6828-01 2 107460276 107460276 G A ST6GAL2 Missense_Mutation p.P53L 0.15 probably_damaging(0.99) TCGA-91-6828-01 2 128712558 128712558 A C SAP130 Splice_Site p.X834_splice 0.15 TCGA-91-6828-01 2 132054493 132054493 G A CYP4F31P 3'Flank 0.33 TCGA-91-6828-01 2 135214206 135214206 A T TMEM163 3'UTR 0.50 TCGA-91-6828-01 2 142238044 142238044 G T LRP1B Missense_Mutation p.N88K 0.08 possibly_damaging(0.728) TCGA-91-6828-01 2 15496520 15496520 G T NBAS Silent p.R1280R 0.18 TCGA-91-6828-01 2 172966194 172966194 G T DLX2 Missense_Mutation p.T194N 0.23 deleterious(0) probably_damaging(1) TCGA-91-6828-01 2 178483345 178483345 C T TTC30A Missense_Mutation p.E29K 0.19 deleterious(0.01) benign(0.251) TCGA-91-6828-01 2 179320856 179320856 G T DFNB59 Missense_Mutation p.G176V 0.32 deleterious(0) probably_damaging(0.986) TCGA-91-6828-01 2 179592313 179592313 T A TTN Silent p.T6664T 0.07 TCGA-91-6828-01 2 1893159 1893159 G T MYT1L Missense_Mutation p.P790T 0.24 deleterious(0.03) possibly_damaging(0.872) TCGA-91-6828-01 2 190738322 190738322 A T PMS1 Missense_Mutation p.L858F 0.30 deleterious(0.01) possibly_damaging(0.695) TCGA-91-6828-01 2 198949108 198949108 G T PLCL1 Missense_Mutation p.K289N 0.06 deleterious(0.03) possibly_damaging(0.866) TCGA-91-6828-01 2 198950297 198950297 C G PLCL1 Missense_Mutation p.L686V 0.03 tolerated(0.11) benign(0.216) TCGA-91-6828-01 2 207621721 207621721 A C MDH1B Missense_Mutation p.M105R 0.23 tolerated(0.39) benign(0.001) TCGA-91-6828-01 2 209103826 209103826 C A IDH1 Missense_Mutation p.D375Y 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-91-6828-01 2 209104696 209104696 C A IDH1 Silent p.V294V 0.29 TCGA-91-6828-01 2 210560407 210560408 - T MAP2 Frame_Shift_Ins p.E1172* 0.24 TCGA-91-6828-01 2 219890792 219890792 G A CCDC108 Silent p.F767F 0.07 TCGA-91-6828-01 2 234590853 234590853 C T UGT1A7 Silent p.F90F 0.29 TCGA-91-6828-01 2 239988418 239988418 C A HDAC4 Missense_Mutation p.E996D 0.30 deleterious(0.04) benign(0.002) TCGA-91-6828-01 2 241569993 241569993 G A GPR35 Silent p.Q239Q 0.41 TCGA-91-6828-01 2 241622061 241622061 C A AQP12B Missense_Mutation p.G65V 0.33 deleterious(0) possibly_damaging(0.906) TCGA-91-6828-01 2 48033436 48033436 C G MSH6 Missense_Mutation p.T1247S 0.08 deleterious(0) probably_damaging(0.996) TCGA-91-6828-01 2 74650614 74650614 T G WDR54 Missense_Mutation p.V121G 0.27 deleterious(0.02) benign(0.066) TCGA-91-6828-01 2 80529975 80529975 C A LRRTM1 Missense_Mutation p.A324S 0.13 tolerated(0.42) probably_damaging(0.978) TCGA-91-6828-01 2 89103870 89103871 - T ANKRD36BP2 RNA 0.44 TCGA-91-6828-01 2 98277062 98277062 C A ACTR1B Missense_Mutation p.G54V 0.22 deleterious(0.01) probably_damaging(0.928) TCGA-91-6828-01 3 100604424 100604424 C A ABI3BP Missense_Mutation p.V225L 0.43 tolerated(0.15) benign(0.097) TCGA-91-6828-01 3 101090930 101090930 T G SENP7 Missense_Mutation p.K240Q 0.04 deleterious(0.03) benign(0.057) TCGA-91-6828-01 3 113002297 113002297 C A BOC Missense_Mutation p.P824Q 0.28 deleterious(0.01) possibly_damaging(0.526) TCGA-91-6828-01 3 113119471 113119471 G T WDR52 Silent p.L465L 0.08 TCGA-91-6828-01 3 124462773 124462773 G A UMPS Missense_Mutation p.G429S 0.31 deleterious(0) probably_damaging(0.948) TCGA-91-6828-01 3 135870109 135870109 G T MSL2 Missense_Mutation p.N538K 0.08 deleterious(0.02) benign(0.358) TCGA-91-6828-01 3 14200114 14200114 C G XPC Silent p.R423R 0.27 TCGA-91-6828-01 3 186257351 186257351 A T CRYGS Silent p.R19R 0.38 TCGA-91-6828-01 3 187447128 187447128 G T BCL6 Silent p.I355I 0.12 TCGA-91-6828-01 3 38991610 38991610 C A SCN11A Missense_Mutation p.D82Y 0.27 deleterious(0) probably_damaging(1) TCGA-91-6828-01 3 39307362 39307362 T G CX3CR1 Missense_Mutation p.R245S 0.29 tolerated(0.16) benign(0.228) TCGA-91-6828-01 3 46014653 46014653 C A FYCO1 Nonsense_Mutation p.E156* 0.43 TCGA-91-6828-01 3 58183597 58183597 C A DNASE1L3 Missense_Mutation p.D219Y 0.29 deleterious(0) probably_damaging(1) TCGA-91-6828-01 3 64640245 64640245 C A ADAMTS9 Intron 0.27 TCGA-91-6828-01 3 98109910 98109910 C A OR5K3 Missense_Mutation p.T134N 0.28 deleterious(0.01) benign(0.374) TCGA-91-6828-01 4 126372404 126372404 G T FAT4 Silent p.V3411V 0.06 TCGA-91-6828-01 4 134071514 134071514 G T PCDH10 Silent p.L73L 0.05 TCGA-91-6828-01 4 40104287 40104287 C T N4BP2 Silent p.C274C 0.15 TCGA-91-6828-01 4 62453151 62453152 TC - LPHN3 Frame_Shift_Del p.Q89Kfs*4 0.24 TCGA-91-6828-01 4 62778453 62778453 G A LPHN3 Missense_Mutation p.R629H 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-91-6828-01 4 65147240 65147240 G T TECRL Silent p.P290P 0.27 TCGA-91-6828-01 4 71347156 71347156 C A MUC7 Missense_Mutation p.P232Q 0.35 tolerated(0.54) unknown(0) TCGA-91-6828-01 4 7728606 7728606 G C SORCS2 Missense_Mutation p.D949H 0.37 deleterious(0.01) benign(0.265) TCGA-91-6828-01 4 96762444 96762444 G T PDHA2 Missense_Mutation p.W381C 0.12 deleterious(0) probably_damaging(0.999) TCGA-91-6828-01 5 122909090 122909090 G T CSNK1G3 Missense_Mutation p.G98V 0.04 deleterious(0) probably_damaging(1) TCGA-91-6828-01 5 127713551 127713551 C G FBN2 Missense_Mutation p.Q581H 0.06 tolerated(0.17) benign(0.036) TCGA-91-6828-01 5 127713567 127713567 A T FBN2 Missense_Mutation p.I576N 0.06 deleterious(0.05) probably_damaging(0.913) TCGA-91-6828-01 5 135379758 135379758 A - TGFBI Frame_Shift_Del p.Y82Sfs*47 0.18 TCGA-91-6828-01 5 140502877 140502877 C A PCDHB4 Missense_Mutation p.Q433K 0.21 deleterious(0.02) benign(0.087) TCGA-91-6828-01 5 140554464 140554464 C A PCDHB7 Nonsense_Mutation p.S683* 0.33 TCGA-91-6828-01 5 140720800 140720801 - A PCDHGA2 Frame_Shift_Ins p.H755Tfs*32 0.22 TCGA-91-6828-01 5 140732045 140732045 A T PCDHGB1 Missense_Mutation p.S740C 0.17 tolerated(0.09) possibly_damaging(0.711) TCGA-91-6828-01 5 140735712 140735712 T A PCDHGA4 Nonsense_Mutation p.Y315* 0.26 TCGA-91-6828-01 5 141387389 141387389 C A GNPDA1 Missense_Mutation p.K67N 0.24 deleterious(0) possibly_damaging(0.859) TCGA-91-6828-01 5 149240474 149240474 G T PDE6A Missense_Mutation p.S856Y 0.27 deleterious(0.02) benign(0.002) TCGA-91-6828-01 5 162896811 162896811 G T HMMR Missense_Mutation p.R146S 0.47 deleterious(0) possibly_damaging(0.53) TCGA-91-6828-01 5 176332314 176332314 T A UIMC1 Missense_Mutation p.K710I 0.09 deleterious(0) unknown(0) TCGA-91-6828-01 5 24537674 24537674 G T CDH10 Missense_Mutation p.T114K 0.18 tolerated(0.06) benign(0.317) TCGA-91-6828-01 5 34937468 34937468 G T DNAJC21 Missense_Mutation p.C159F 0.44 deleterious(0.02) benign(0.333) TCGA-91-6828-01 5 37299057 37299057 T C NUP155 Missense_Mutation p.S1236G 0.07 tolerated(0.05) benign(0.392) TCGA-91-6828-01 5 38458490 38458490 C A EGFLAM Missense_Mutation p.A930D 0.22 deleterious(0) probably_damaging(1) TCGA-91-6828-01 5 38883971 38883971 A T OSMR Missense_Mutation p.K154I 0.21 tolerated(0.06) benign(0.059) TCGA-91-6828-01 5 39383196 39383196 T A DAB2 Missense_Mutation p.T289S 0.22 deleterious(0) possibly_damaging(0.698) TCGA-91-6828-01 5 5200305 5200305 G A ADAMTS16 Missense_Mutation p.M458I 0.15 deleterious(0) probably_damaging(0.999) TCGA-91-6828-01 5 79855060 79855060 C A ANKRD34B Missense_Mutation p.R260I 0.26 deleterious(0) possibly_damaging(0.646) TCGA-91-6828-01 5 95764992 95764992 G C PCSK1 Missense_Mutation p.F70L 0.04 tolerated(0.17) benign(0.003) TCGA-91-6828-01 6 128294253 128294253 C T PTPRK Missense_Mutation p.E1401K 0.14 deleterious(0) probably_damaging(0.979) TCGA-91-6828-01 6 133044835 133044835 T G VNN3 Intron 0.22 TCGA-91-6828-01 6 135263563 135263563 C A ALDH8A1 Silent p.R142R 0.39 TCGA-91-6828-01 6 146720434 146720434 G C GRM1 Silent p.V753V 0.38 TCGA-91-6828-01 6 166571970 166571970 C T T Missense_Mutation p.A381T 0.07 tolerated(0.13) benign(0.003) TCGA-91-6828-01 6 166872949 166872949 G A RPS6KA2 Missense_Mutation p.R363W 0.16 deleterious(0) probably_damaging(0.94) TCGA-91-6828-01 6 21065370 21065370 G C CDKAL1 Missense_Mutation p.E383Q 0.27 tolerated(0.14) benign(0.004) TCGA-91-6828-01 6 30121946 30121946 C A TRIM10 Missense_Mutation p.G416C 0.57 tolerated(0.06) probably_damaging(0.949) TCGA-91-6828-01 6 4032758 4032758 G T PRPF4B Missense_Mutation p.G336V 0.55 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-91-6828-01 6 49753968 49753968 C A PGK2 Missense_Mutation p.W311C 0.47 deleterious(0.01) benign(0.046) TCGA-91-6828-01 6 56857338 56857338 T A BEND6 Missense_Mutation p.L95M 0.08 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-91-6828-01 6 6196057 6196057 T C F13A1 Silent p.Q426Q 0.05 TCGA-91-6828-01 6 69728293 69728293 G A BAI3 Missense_Mutation p.G670E 0.06 deleterious(0) possibly_damaging(0.81) TCGA-91-6828-01 6 70490434 70490434 C G LMBRD1 Missense_Mutation p.A87P 0.53 tolerated(0.26) benign(0.131) TCGA-91-6828-01 6 76572390 76572390 C - MYO6 Frame_Shift_Del p.H542Tfs*67 0.12 TCGA-91-6828-01 7 1012907 1012907 T C COX19 Missense_Mutation p.E35G 0.11 tolerated(0.35) benign(0.289) TCGA-91-6828-01 7 103018234 103018234 C T SLC26A5 Missense_Mutation p.D600N 0.22 tolerated(0.84) possibly_damaging(0.73) TCGA-91-6828-01 7 103206713 103206713 A T RELN Missense_Mutation p.C1632S 0.20 deleterious(0) probably_damaging(0.992) TCGA-91-6828-01 7 105108805 105108805 C T PUS7 Missense_Mutation p.G502R 0.22 deleterious(0) probably_damaging(0.992) TCGA-91-6828-01 7 108213680 108213680 C G DNAJB9 Silent p.T185T 0.08 TCGA-91-6828-01 7 112462326 112462326 C T C7orf60 Missense_Mutation p.D231N 0.23 tolerated(0.11) benign(0.044) TCGA-91-6828-01 7 127231284 127231284 C T ARF5 Silent p.T158T 0.33 TCGA-91-6828-01 7 129125678 129125678 C A STRIP2 3'UTR 0.05 TCGA-91-6828-01 7 129765721 129765721 T A KLHDC10 Missense_Mutation p.L294H 0.19 deleterious(0) possibly_damaging(0.907) TCGA-91-6828-01 7 129916550 129916550 C A CPA2 Missense_Mutation p.P223H 0.23 deleterious(0) probably_damaging(1) TCGA-91-6828-01 7 136936041 136936041 G - PTN Frame_Shift_Del p.E130Nfs*15 0.18 TCGA-91-6828-01 7 141738391 141738391 C A MGAM Silent p.L764L 0.22 TCGA-91-6828-01 7 142575519 142575519 C A TRPV6 Missense_Mutation p.M78I 0.22 deleterious(0.03) benign(0.001) TCGA-91-6828-01 7 143043748 143043748 C A CLCN1 Silent p.T787T 0.21 TCGA-91-6828-01 7 150217054 150217054 G T GIMAP7 5'UTR 0.19 TCGA-91-6828-01 7 150417162 150417162 C A GIMAP1 Missense_Mutation p.Q24K 0.27 tolerated(0.07) benign(0.41) TCGA-91-6828-01 7 19156565 19156565 G A TWIST1 Missense_Mutation p.A127V 0.14 deleterious(0) probably_damaging(0.99) TCGA-91-6828-01 7 31917643 31917643 A G PDE1C Silent p.Y204Y 0.47 TCGA-91-6828-01 7 48314884 48314884 C G ABCA13 Nonsense_Mutation p.S1874* 0.11 TCGA-91-6828-01 7 56049250 56049250 G T GBAS Missense_Mutation p.Q121H 0.29 deleterious(0) benign(0.311) TCGA-91-6828-01 7 73245707 73245707 C T CLDN4 Missense_Mutation p.T59I 0.18 deleterious(0.01) probably_damaging(0.983) TCGA-91-6828-01 7 7480482 7480482 C A COL28A1 Missense_Mutation p.G554V 0.24 deleterious(0) probably_damaging(1) TCGA-91-6828-01 7 8110750 8110750 A T GLCCI1 Missense_Mutation p.D389V 0.17 deleterious(0) probably_damaging(0.994) TCGA-91-6828-01 7 92730825 92730825 C A SAMD9 Missense_Mutation p.R1529L 0.24 tolerated(0.05) possibly_damaging(0.738) TCGA-91-6828-01 7 96650227 96650227 G T DLX5 Missense_Mutation p.R231S 0.28 tolerated(0.18) probably_damaging(0.931) TCGA-91-6828-01 7 98592340 98592340 G T TRRAP Missense_Mutation p.G3379V 0.26 probably_damaging(0.997) TCGA-91-6828-01 7 99809101 99809101 C A STAG3 Missense_Mutation p.P1152T 0.20 tolerated(0.21) benign(0.003) TCGA-91-6828-01 8 103572936 103572936 G T ODF1 Missense_Mutation p.G193C 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-91-6828-01 8 104973292 104973292 G C RIMS2 Splice_Site p.X901_splice 0.26 TCGA-91-6828-01 8 110523010 110523010 A T PKHD1L1 Silent p.P3800P 0.07 TCGA-91-6828-01 8 122641478 122641478 G A HAS2 Nonsense_Mutation p.Q35* 0.05 TCGA-91-6828-01 8 124992922 124992922 G T FER1L6 Missense_Mutation p.K427N 0.05 tolerated(0.06) probably_damaging(0.997) TCGA-91-6828-01 8 143996605 143996605 G T CYP11B2 Missense_Mutation p.P151H 0.43 deleterious(0) probably_damaging(0.987) TCGA-91-6828-01 8 145151255 145151255 G A CYC1 Missense_Mutation p.G157S 0.12 deleterious(0) probably_damaging(0.997) TCGA-91-6828-01 8 145161786 145161786 G C MAF1 Missense_Mutation p.E223D 0.07 tolerated(0.9) benign(0.217) TCGA-91-6828-01 8 24184143 24184143 G A ADAM28 Missense_Mutation p.V323I 0.52 tolerated(1) benign(0.004) TCGA-91-6828-01 8 52370103 52370103 C - PXDNL Frame_Shift_Del p.E313Kfs*21 0.22 TCGA-91-6828-01 8 59511849 59511849 C G NSMAF Missense_Mutation p.W540C 0.10 deleterious(0) probably_damaging(1) TCGA-91-6828-01 8 68031019 68031019 A G CSPP1 Missense_Mutation p.S549G 0.10 tolerated(0.11) benign(0.007) TCGA-91-6828-01 8 72156924 72156924 G T EYA1 Missense_Mutation p.P352T 0.23 tolerated(0.27) benign(0.059) TCGA-91-6828-01 8 75149448 75149448 C G JPH1 3'UTR 0.31 TCGA-91-6828-01 8 75757410 75757410 A C PI15 Missense_Mutation p.K147T 0.03 deleterious(0.01) probably_damaging(0.911) TCGA-91-6828-01 8 77766034 77766034 G T ZFHX4 Missense_Mutation p.D2293Y 0.36 probably_damaging(0.946) TCGA-91-6828-01 8 77766282 77766282 C A ZFHX4 Missense_Mutation p.N2375K 0.29 benign(0.011) TCGA-91-6828-01 9 104071741 104071741 A G LPPR1 Missense_Mutation p.T212A 0.23 tolerated(1) possibly_damaging(0.866) TCGA-91-6828-01 9 110068802 110068802 C A RAD23B Missense_Mutation p.A124E 0.10 tolerated(0.53) unknown(0) TCGA-91-6828-01 9 140809117 140809117 G T CACNA1B Missense_Mutation p.V212L 0.31 deleterious(0.04) benign(0.027) TCGA-91-6828-01 9 14846066 14846066 A T FREM1 Missense_Mutation p.S429T 0.35 deleterious(0.03) possibly_damaging(0.896) TCGA-91-6828-01 9 15471116 15471116 C G PSIP1 Intron 0.17 TCGA-91-6828-01 9 18905849 18905849 G A ADAMTSL1 Missense_Mutation p.G1641S 0.32 tolerated(0.12) possibly_damaging(0.881) TCGA-91-6828-01 9 2047450 2047450 G T SMARCA2 Missense_Mutation p.D338Y 0.30 possibly_damaging(0.861) TCGA-91-6828-01 9 38396338 38396338 C A ALDH1B1 Missense_Mutation p.P198Q 0.26 deleterious(0) probably_damaging(0.942) TCGA-91-6828-01 9 71152351 71152351 G T TMEM252 Missense_Mutation p.P113T 0.20 deleterious(0.04) benign(0.174) TCGA-91-6828-01 9 73399097 73399097 G C TRPM3 Missense_Mutation p.P358A 0.20 deleterious(0) possibly_damaging(0.775) TCGA-91-6828-01 9 77353458 77353458 C A TRPM6 Missense_Mutation p.G1881W 0.15 deleterious(0) probably_damaging(1) TCGA-91-6828-01 9 78686767 78686767 G C PCSK5 Missense_Mutation p.G283R 0.19 deleterious(0) probably_damaging(1) TCGA-91-6828-01 X 123554295 123554295 C A TENM1 Missense_Mutation p.W1616C 0.39 tolerated(0.05) possibly_damaging(0.827) TCGA-91-6828-01 X 150828215 150828215 T G PASD1 Missense_Mutation p.Y250D 0.07 deleterious(0.04) benign(0.055) TCGA-91-6828-01 X 32663166 32663166 A C DMD Missense_Mutation p.L355R 0.12 probably_damaging(0.975) TCGA-91-6828-01 X 35974306 35974306 G T CXorf22 Missense_Mutation p.G468V 0.62 deleterious(0.03) benign(0.311) TCGA-91-6828-01 X 50112015 50112015 T C DGKK RNA 0.08 TCGA-91-6828-01 X 75396788 75396788 G T PBDC1 Missense_Mutation p.D124Y 0.54 deleterious(0) probably_damaging(0.988) TCGA-91-6828-01 X 99854659 99854659 G T TNMD Missense_Mutation p.C300F 0.59 deleterious(0) probably_damaging(0.991) TCGA-91-6829-01 10 101656083 101656083 T C DNMBP Missense_Mutation p.I998V 0.15 deleterious(0.03) probably_damaging(0.987) TCGA-91-6829-01 10 104228715 104228715 C G TMEM180 5'UTR 0.27 TCGA-91-6829-01 10 107005408 107005408 G T SORCS3 Nonsense_Mutation p.E993* 0.23 TCGA-91-6829-01 10 108923735 108923735 T C SORCS1 Missense_Mutation p.N184D 0.28 deleterious(0.02) possibly_damaging(0.46) TCGA-91-6829-01 10 115536880 115536880 C A PLEKHS1 Intron 0.40 TCGA-91-6829-01 10 123239251 123239251 T A FGFR2 3'Flank 0.26 TCGA-91-6829-01 10 125426441 125426441 C T GPR26 Missense_Mutation p.T173I 0.21 deleterious(0.04) benign(0.178) TCGA-91-6829-01 10 129904199 129904199 C T MKI67 Missense_Mutation p.E1969K 0.23 tolerated(0.08) benign(0.003) TCGA-91-6829-01 10 129913427 129913427 T C MKI67 Silent p.P415P 0.28 TCGA-91-6829-01 10 131666158 131666158 G A EBF3 Missense_Mutation p.A258V 0.28 deleterious(0) possibly_damaging(0.621) TCGA-91-6829-01 10 133106583 133106583 C A TCERG1L Silent p.G187G 0.16 TCGA-91-6829-01 10 16980992 16980992 T C CUBN Silent p.E1901E 0.34 TCGA-91-6829-01 10 17927378 17927378 G T MRC1L1 Missense_Mutation p.G1027V 0.24 benign(0.201) TCGA-91-6829-01 10 18270268 18270268 G T SLC39A12 Nonsense_Mutation p.E318* 0.17 TCGA-91-6829-01 10 18629792 18629792 G A CACNB2 Intron 0.05 TCGA-91-6829-01 10 25886724 25886724 C A GPR158 Silent p.A723A 0.31 TCGA-91-6829-01 10 26508011 26508011 C A GAD2 Missense_Mutation p.A109E 0.42 tolerated(1) benign(0.024) TCGA-91-6829-01 10 26575391 26575391 G C GAD2 Missense_Mutation p.V452L 0.36 deleterious(0.02) benign(0.02) TCGA-91-6829-01 10 27306605 27306605 A G ANKRD26 Silent p.C1444C 0.05 TCGA-91-6829-01 10 38345105 38345105 A G ZNF33A Missense_Mutation p.R685G 0.26 deleterious(0) probably_damaging(0.999) TCGA-91-6829-01 10 43882738 43882738 G T HNRNPF Missense_Mutation p.L199M 0.24 tolerated(0.2) benign(0.065) TCGA-91-6829-01 10 48389931 48389931 G T RBP3 Missense_Mutation p.A316D 0.22 deleterious(0) probably_damaging(0.985) TCGA-91-6829-01 10 49365247 49365247 A T FRMPD2 3'UTR 0.27 TCGA-91-6829-01 10 50959877 50959877 T C OGDHL Missense_Mutation p.M249V 0.20 tolerated(0.06) benign(0.001) TCGA-91-6829-01 10 51077590 51077590 C G PARG Missense_Mutation p.G182A 0.38 tolerated(0.15) probably_damaging(0.982) TCGA-91-6829-01 10 55582281 55582281 G T PCDH15 Silent p.A1737A 0.14 TCGA-91-6829-01 10 55944963 55944963 A T PCDH15 Silent p.T457T 0.36 TCGA-91-6829-01 10 56106133 56106133 C A PCDH15 Missense_Mutation p.D196Y 0.21 deleterious(0.01) possibly_damaging(0.515) TCGA-91-6829-01 10 60548170 60548170 G A BICC1 Missense_Mutation p.R196Q 0.33 deleterious(0) possibly_damaging(0.716) TCGA-91-6829-01 10 70056647 70056647 T A PBLD Silent p.A60A 0.17 TCGA-91-6829-01 10 71103616 71103616 G T HK1 Missense_Mutation p.D37Y 0.25 deleterious(0.02) possibly_damaging(0.686) TCGA-91-6829-01 10 71912108 71912108 C G SAR1A 3'UTR 0.30 TCGA-91-6829-01 10 7244452 7244452 G C SFMBT2 Missense_Mutation p.P493A 0.29 deleterious(0) benign(0.075) TCGA-91-6829-01 10 73455252 73455252 G T CDH23 Missense_Mutation p.E381D 0.19 deleterious(0) probably_damaging(0.91) TCGA-91-6829-01 10 75527670 75527670 C A SEC24C Missense_Mutation p.L696I 0.08 deleterious(0.01) probably_damaging(1) TCGA-91-6829-01 10 75563708 75563708 C A NDST2 Missense_Mutation p.S637I 0.25 tolerated(0.08) benign(0.014) TCGA-91-6829-01 10 7683889 7683889 C T ITIH5 Splice_Site p.X100_splice 0.08 TCGA-91-6829-01 10 85993978 85993978 C A LRIT1 Missense_Mutation p.R249M 0.19 deleterious(0) possibly_damaging(0.873) TCGA-91-6829-01 10 89120773 89120773 C T NUTM2D Silent p.H234H 0.16 TCGA-91-6829-01 10 90341368 90341368 G A RNLS Missense_Mutation p.P108L 0.19 deleterious(0) probably_damaging(0.974) TCGA-91-6829-01 10 93717010 93717010 G T BTAF1 Missense_Mutation p.C287F 0.19 deleterious(0) benign(0.103) TCGA-91-6829-01 10 93784522 93784522 G T BTAF1 Missense_Mutation p.D1625Y 0.23 deleterious(0) probably_damaging(0.996) TCGA-91-6829-01 10 94388606 94388606 T A KIF11 Missense_Mutation p.V420E 0.17 tolerated(0.38) benign(0.007) TCGA-91-6829-01 10 96609673 96609673 G T CYP2C19 Splice_Site p.X384_splice 0.18 TCGA-91-6829-01 10 98743640 98743640 A G C10orf12 Silent p.K831K 0.13 TCGA-91-6829-01 11 1075905 1075905 G C MUC2 Missense_Mutation p.V111L 0.25 probably_damaging(0.999) TCGA-91-6829-01 11 107676120 107676120 C A SLC35F2 Silent p.V232V 0.25 TCGA-91-6829-01 11 121174109 121174109 G C SC5D Missense_Mutation p.D9H 0.22 deleterious(0) probably_damaging(0.995) TCGA-91-6829-01 11 122647789 122647789 C T UBASH3B Silent p.V91V 0.12 TCGA-91-6829-01 11 123894352 123894352 C T OR10G9 Silent p.L211L 0.18 TCGA-91-6829-01 11 124189574 124189574 C - OR8D2 Frame_Shift_Del p.V174Sfs*12 0.21 TCGA-91-6829-01 11 124745497 124745497 G A ROBO3 Silent p.L779L 0.31 TCGA-91-6829-01 11 130785484 130785484 C G SNX19 Missense_Mutation p.W117C 0.39 deleterious(0) probably_damaging(0.998) TCGA-91-6829-01 11 134251899 134251899 C T B3GAT1 Missense_Mutation p.R313Q 0.11 deleterious(0.02) probably_damaging(0.966) TCGA-91-6829-01 11 1718521 1718521 G T KRTAP5-6 Missense_Mutation p.G16C 0.21 unknown(0) TCGA-91-6829-01 11 18194989 18194989 C A MRGPRX4 Silent p.S62S 0.21 TCGA-91-6829-01 11 18434318 18434318 C G LDHC Missense_Mutation p.N18K 0.41 tolerated(0.94) benign(0.007) TCGA-91-6829-01 11 22272548 22272548 G C ANO5 Missense_Mutation p.G391R 0.26 deleterious(0) probably_damaging(0.961) TCGA-91-6829-01 11 30032523 30032523 T A KCNA4 Missense_Mutation p.H568L 0.34 deleterious(0) possibly_damaging(0.75) TCGA-91-6829-01 11 32676475 32676475 G T CCDC73 Missense_Mutation p.T230K 0.25 deleterious(0.03) benign(0.167) TCGA-91-6829-01 11 376276 376276 A T B4GALNT4 Missense_Mutation p.M408L 0.17 tolerated(0.14) benign(0.418) TCGA-91-6829-01 11 4406605 4406605 G A TRIM21 Silent p.F446F 0.12 TCGA-91-6829-01 11 4470615 4470615 T G OR52K2 Missense_Mutation p.L16V 0.09 deleterious(0) probably_damaging(0.997) TCGA-91-6829-01 11 45991437 45991437 G A PHF21A Missense_Mutation p.P210S 0.50 tolerated(0.34) benign(0.009) TCGA-91-6829-01 11 47198363 47198363 A C ARFGAP2 Missense_Mutation p.F14L 0.31 tolerated(0.06) possibly_damaging(0.9) TCGA-91-6829-01 11 47330186 47330186 A T MADD Silent p.A1268A 0.17 TCGA-91-6829-01 11 48238557 48238557 T C OR4B1 Silent p.L66L 0.36 TCGA-91-6829-01 11 51515322 51515322 G A OR4C46 Missense_Mutation p.G14E 0.20 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-91-6829-01 11 55135885 55135885 G A OR4A15 Missense_Mutation p.A176T 0.33 tolerated_low_confidence(0.08) possibly_damaging(0.511) TCGA-91-6829-01 11 55321892 55321892 A G OR4C15 Missense_Mutation p.N37S 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.486) TCGA-91-6829-01 11 55433228 55433228 T - OR4C6 Frame_Shift_Del p.L196* 0.21 TCGA-91-6829-01 11 55588013 55588013 C T OR5D18 Missense_Mutation p.T303I 0.32 deleterious(0.03) benign(0.001) TCGA-91-6829-01 11 55904398 55904398 T C OR8J3 Missense_Mutation p.H266R 0.17 deleterious(0.01) benign(0.073) TCGA-91-6829-01 11 56043784 56043784 C A OR5T1 Missense_Mutation p.L224M 0.20 deleterious(0.05) possibly_damaging(0.694) TCGA-91-6829-01 11 56127836 56127836 C G OR8J1 Silent p.T38T 0.23 TCGA-91-6829-01 11 57440517 57440517 G T ZDHHC5 5'UTR 0.07 TCGA-91-6829-01 11 58275014 58275014 C A OR5B21 Missense_Mutation p.D189Y 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.452) TCGA-91-6829-01 11 58480262 58480262 A T GLYAT Missense_Mutation p.I96N 0.26 deleterious(0) probably_damaging(0.988) TCGA-91-6829-01 11 59271729 59271729 T C OR4D11 Silent p.S227S 0.22 TCGA-91-6829-01 11 59282749 59282749 C T OR4D9 Missense_Mutation p.R122C 0.05 deleterious(0.04) benign(0.046) TCGA-91-6829-01 11 59283102 59283102 C A OR4D9 Silent p.T239T 0.41 TCGA-91-6829-01 11 59828748 59828748 G T MS4A3 Nonsense_Mutation p.G39* 0.13 TCGA-91-6829-01 11 59828749 59828749 G T MS4A3 Missense_Mutation p.G39V 0.15 tolerated(0.15) possibly_damaging(0.719) TCGA-91-6829-01 11 6008214 6008214 C G OR52L1 5'UTR 0.08 TCGA-91-6829-01 11 60703723 60703723 G T TMEM132A Missense_Mutation p.G807C 0.29 deleterious(0.02) possibly_damaging(0.779) TCGA-91-6829-01 11 61026549 61026549 A G VWCE Silent p.G822G 0.21 TCGA-91-6829-01 11 62288621 62288621 C A AHNAK Missense_Mutation p.G4423V 0.20 benign(0.396) TCGA-91-6829-01 11 6231320 6231320 C A C11orf42 Silent p.R105R 0.27 TCGA-91-6829-01 11 6291926 6291926 C A CCKBR Missense_Mutation p.A235D 0.40 deleterious(0.02) possibly_damaging(0.908) TCGA-91-6829-01 11 64694315 64694315 G A PPP2R5B Missense_Mutation p.V111M 0.23 deleterious(0.02) probably_damaging(0.986) TCGA-91-6829-01 11 65267694 65267694 A G MALAT1 RNA 0.08 TCGA-91-6829-01 11 66039815 66039815 C A RAB1B Intron 0.42 TCGA-91-6829-01 11 66061839 66061839 C A TMEM151A Nonsense_Mutation p.S41* 0.13 TCGA-91-6829-01 11 66084402 66084402 T A CD248 Missense_Mutation p.S33C 0.33 tolerated(0.07) probably_damaging(0.996) TCGA-91-6829-01 11 67432005 67432005 C A ALDH3B2 Missense_Mutation p.E245D 0.24 tolerated(0.08) benign(0.073) TCGA-91-6829-01 11 6891751 6891751 G A OR10A2 Missense_Mutation p.E256K 0.29 tolerated(0.16) benign(0.019) TCGA-91-6829-01 11 69631115 69631115 C G FGF3 Missense_Mutation p.M99I 0.05 tolerated(0.12) possibly_damaging(0.596) TCGA-91-6829-01 11 7110638 7110638 C A RBMXL2 Missense_Mutation p.P96Q 0.36 tolerated(0.18) possibly_damaging(0.884) TCGA-91-6829-01 11 71948810 71948810 G C INPPL1 Silent p.R1174R 0.19 TCGA-91-6829-01 11 76371892 76371892 C A LRRC32 Missense_Mutation p.D249Y 0.20 deleterious(0) probably_damaging(1) TCGA-91-6829-01 11 76867955 76867955 G A MYO7A Missense_Mutation p.G214R 0.09 deleterious(0) probably_damaging(1) TCGA-91-6829-01 11 8132164 8132164 G T RIC3 3'UTR 0.20 TCGA-91-6829-01 11 85396854 85396854 T A CCDC89 Missense_Mutation p.Q107L 0.13 tolerated(0.17) benign(0.001) TCGA-91-6829-01 11 85627137 85627137 G A CCDC83 Missense_Mutation p.S345N 0.14 tolerated(0.17) benign(0.206) TCGA-91-6829-01 11 89059881 89059881 G A NOX4 3'UTR 0.06 TCGA-91-6829-01 11 89774486 89774486 G T TRIM49C Missense_Mutation p.G376V 0.21 deleterious(0) possibly_damaging(0.821) TCGA-91-6829-01 11 9455345 9455345 C T IPO7 Missense_Mutation p.P676S 0.11 tolerated(0.44) benign(0.011) TCGA-91-6829-01 12 10149814 10149814 T A CLEC1B Missense_Mutation p.L76F 0.13 deleterious(0.01) possibly_damaging(0.873) TCGA-91-6829-01 12 103872158 103872158 A T C12orf42 Missense_Mutation p.L16Q 0.65 deleterious_low_confidence(0.02) possibly_damaging(0.686) TCGA-91-6829-01 12 104393245 104393245 A G GLT8D2 Missense_Mutation p.V111A 0.54 deleterious(0.02) possibly_damaging(0.821) TCGA-91-6829-01 12 108985202 108985202 C A TMEM119 3'UTR 0.38 TCGA-91-6829-01 12 11507450 11507452 TAC AT PRB1 Splice_Site p.X34_splice 0.23 TCGA-91-6829-01 12 119978416 119978416 C A CCDC60 Intron 0.44 TCGA-91-6829-01 12 130907094 130907094 G C RIMBP2 Missense_Mutation p.P792A 0.12 deleterious(0.04) benign(0.008) TCGA-91-6829-01 12 130963483 130963483 G T RIMBP2 Missense_Mutation p.Q26K 0.23 deleterious(0) probably_damaging(0.993) TCGA-91-6829-01 12 131490582 131490582 G T GPR133 Missense_Mutation p.A441S 0.35 tolerated(0.34) benign(0.246) TCGA-91-6829-01 12 133502422 133502422 T A ZNF605 Missense_Mutation p.E519V 0.22 tolerated(0.44) probably_damaging(0.988) TCGA-91-6829-01 12 15652394 15652394 C A PTPRO Missense_Mutation p.T176K 0.27 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-91-6829-01 12 16757970 16757970 A T LMO3 Intron 0.43 TCGA-91-6829-01 12 2022273 2022273 G T CACNA2D4 Silent p.I114I 0.31 TCGA-91-6829-01 12 21958120 21958120 C G ABCC9 Intron 0.06 TCGA-91-6829-01 12 24736923 24736923 C A LINC00477 RNA 0.15 TCGA-91-6829-01 12 27235055 27235055 T C C12orf71 Missense_Mutation p.K121R 0.18 tolerated(0.11) benign(0.012) TCGA-91-6829-01 12 32134413 32134413 G T KIAA1551 Missense_Mutation p.R175L 0.14 deleterious(0.01) probably_damaging(0.937) TCGA-91-6829-01 12 32138614 32138614 G C KIAA1551 Missense_Mutation p.K1575N 0.14 deleterious(0.04) probably_damaging(0.988) TCGA-91-6829-01 12 46355641 46355641 C T SCAF11 Splice_Site p.X21_splice 0.44 TCGA-91-6829-01 12 48921694 48921694 G A OR8S1 Splice_Site p.X297_splice 0.53 TCGA-91-6829-01 12 53004427 53004427 G C KRT73 Missense_Mutation p.R435G 0.17 deleterious(0) possibly_damaging(0.903) TCGA-91-6829-01 12 54802718 54802718 G A ITGA5 Nonsense_Mutation p.Q202* 0.44 TCGA-91-6829-01 12 56720556 56720556 G A PAN2 Silent p.S369S 0.40 TCGA-91-6829-01 12 6640523 6640523 C T NCAPD2 Missense_Mutation p.T1384I 0.15 deleterious(0) probably_damaging(0.99) TCGA-91-6829-01 12 71016262 71016262 C A PTPRB Nonsense_Mutation p.E206* 0.44 TCGA-91-6829-01 12 71953410 71953410 G T LGR5 Missense_Mutation p.R254M 0.29 deleterious(0) possibly_damaging(0.841) TCGA-91-6829-01 12 72090237 72090237 T C TMEM19 Missense_Mutation p.L89P 0.33 deleterious(0) probably_damaging(0.973) TCGA-91-6829-01 12 96131706 96131706 C G NTN4 Missense_Mutation p.A268P 0.39 deleterious(0) probably_damaging(0.998) TCGA-91-6829-01 12 98992384 98992384 A T SLC25A3 Missense_Mutation p.M183L 0.43 tolerated(0.14) benign(0.145) TCGA-91-6829-01 13 113088847 113088847 G T SPACA7 Missense_Mutation p.S191I 0.42 tolerated_low_confidence(0.05) benign(0.148) TCGA-91-6829-01 13 28623625 28623625 C T FLT3 Missense_Mutation p.R311Q 0.43 deleterious(0.03) probably_damaging(0.97) TCGA-91-6829-01 13 32811922 32811922 C T FRY Missense_Mutation p.H2073Y 0.08 tolerated(0.13) benign(0.012) TCGA-91-6829-01 13 38172919 38172919 G A POSTN 5'UTR 0.15 TCGA-91-6829-01 13 38225534 38225534 T G TRPC4 Missense_Mutation p.E649D 0.39 tolerated(0.41) probably_damaging(0.999) TCGA-91-6829-01 13 39438599 39438599 G C FREM2 Missense_Mutation p.Q2613H 0.47 deleterious(0) probably_damaging(0.956) TCGA-91-6829-01 13 39550731 39550731 G T STOML3 Missense_Mutation p.R59S 0.67 deleterious(0.01) probably_damaging(0.999) TCGA-91-6829-01 13 39586281 39586281 G T PROSER1 Nonsense_Mutation p.S884* 0.40 TCGA-91-6829-01 13 48934152 48934152 G - RB1 Splice_Site p.X204_splice 0.34 TCGA-91-6829-01 13 58207235 58207235 C T PCDH17 Silent p.S185S 0.22 TCGA-91-6829-01 13 72134027 72134027 T A DACH1 Missense_Mutation p.S456C 0.42 probably_damaging(0.997) TCGA-91-6829-01 13 73468017 73468017 T G PIBF1 Missense_Mutation p.L473R 0.39 deleterious(0) possibly_damaging(0.558) TCGA-91-6829-01 13 96238287 96238287 G C DZIP1 Missense_Mutation p.I774M 0.19 tolerated(0.14) benign(0.021) TCGA-91-6829-01 14 101498348 101498348 T A MIR543 RNA 0.15 TCGA-91-6829-01 14 102472468 102472468 A T DYNC1H1 Missense_Mutation p.T1893S 0.50 benign(0.439) TCGA-91-6829-01 14 103187709 103187709 T G RCOR1 Missense_Mutation p.V395G 0.44 deleterious(0) probably_damaging(0.956) TCGA-91-6829-01 14 103442278 103442278 G A CDC42BPB Silent p.Y443Y 0.06 TCGA-91-6829-01 14 105405700 105405700 T C AHNAK2 Missense_Mutation p.D5363G 0.38 benign(0.37) TCGA-91-6829-01 14 105418921 105418921 T A AHNAK2 Missense_Mutation p.D956V 0.42 possibly_damaging(0.843) TCGA-91-6829-01 14 20296000 20296000 C A OR4N2 Missense_Mutation p.H131Q 0.20 deleterious(0.05) benign(0.059) TCGA-91-6829-01 14 22102704 22102704 A T OR10G2 Missense_Mutation p.F99I 0.16 deleterious(0) possibly_damaging(0.493) TCGA-91-6829-01 14 23884905 23884905 C G MYH7 Missense_Mutation p.R1697P 0.19 deleterious(0) probably_damaging(0.996) TCGA-91-6829-01 14 23894191 23894191 C A MYH7 Missense_Mutation p.M822I 0.25 deleterious(0.04) benign(0.433) TCGA-91-6829-01 14 26918112 26918112 T A NOVA1 Missense_Mutation p.T193S 0.20 deleterious(0.04) unknown(0) TCGA-91-6829-01 14 32562038 32562038 G T ARHGAP5 Missense_Mutation p.L721F 0.23 deleterious(0.01) benign(0.068) TCGA-91-6829-01 14 32562039 32562039 G T ARHGAP5 Missense_Mutation p.A722S 0.22 deleterious(0.02) possibly_damaging(0.831) TCGA-91-6829-01 14 34998672 34998672 G A EAPP Missense_Mutation p.T121I 0.21 tolerated(0.21) benign(0.001) TCGA-91-6829-01 14 35777229 35777229 G A PSMA6 Missense_Mutation p.G36S 0.32 deleterious(0.04) possibly_damaging(0.583) TCGA-91-6829-01 14 44974165 44974165 C T FSCB Missense_Mutation p.E676K 0.39 deleterious(0.02) unknown(0) TCGA-91-6829-01 14 45668130 45668130 G C FANCM Missense_Mutation p.M2000I 0.08 deleterious(0.01) possibly_damaging(0.718) TCGA-91-6829-01 14 56755250 56755250 C T PELI2 Silent p.T135T 0.28 TCGA-91-6829-01 14 60712664 60712664 G A PPM1A Silent p.K33K 0.40 TCGA-91-6829-01 14 66082969 66082969 A C FUT8 Missense_Mutation p.E120D 0.16 tolerated(0.42) benign(0.002) TCGA-91-6829-01 14 68217815 68217815 T A ZFYVE26 Splice_Site p.X2458_splice 0.11 TCGA-91-6829-01 14 73686110 73686110 G T PSEN1 3'UTR 0.45 TCGA-91-6829-01 14 86089577 86089577 C A FLRT2 Silent p.T573T 0.38 TCGA-91-6829-01 14 94935730 94935730 C A SERPINA9 Missense_Mutation p.G168C 0.44 deleterious(0) benign(0.394) TCGA-91-6829-01 15 100269825 100269825 C T LYSMD4 Missense_Mutation p.E133K 0.14 tolerated(0.05) probably_damaging(0.97) TCGA-91-6829-01 15 102345921 102345921 C G OR4F6 5'UTR 0.28 TCGA-91-6829-01 15 22332696 22332696 A C RP11-69H14.6 RNA 0.12 TCGA-91-6829-01 15 22368867 22368867 A T OR4M2 Missense_Mutation p.I98F 0.06 deleterious(0.02) possibly_damaging(0.482) TCGA-91-6829-01 15 23812450 23812450 G T MKRN3 Silent p.L507L 0.29 TCGA-91-6829-01 15 25455072 25455072 T A SNORD115-22 RNA 0.28 TCGA-91-6829-01 15 28260040 28260040 T C OCA2 Missense_Mutation p.Q309R 0.24 tolerated(0.16) benign(0.013) TCGA-91-6829-01 15 30663362 30663362 G C CHRFAM7A Silent p.T183T 0.15 TCGA-91-6829-01 15 34023715 34023715 G T RYR3 Missense_Mutation p.R2415M 0.25 probably_damaging(0.999) TCGA-91-6829-01 15 40093898 40093898 C A GPR176 Missense_Mutation p.R328L 0.30 deleterious(0) probably_damaging(0.999) TCGA-91-6829-01 15 41988781 41988781 G T MGA Nonsense_Mutation p.E525* 0.22 TCGA-91-6829-01 15 44198064 44198064 C T FRMD5 Silent p.L171L 0.31 TCGA-91-6829-01 15 49085535 49085535 T C CEP152 Missense_Mutation p.Q272R 0.22 deleterious(0) possibly_damaging(0.798) TCGA-91-6829-01 15 56390279 56390279 C A RFX7 Silent p.P369P 0.23 TCGA-91-6829-01 15 66832443 66832443 C T ZWILCH Missense_Mutation p.P528S 0.26 deleterious(0) probably_damaging(1) TCGA-91-6829-01 15 67473647 67473647 C T SMAD3 Missense_Mutation p.R243C 0.17 deleterious(0) probably_damaging(0.998) TCGA-91-6829-01 15 70345643 70345643 C A TLE3 Missense_Mutation p.G636W 0.33 deleterious(0) probably_damaging(1) TCGA-91-6829-01 15 70961608 70961608 G A UACA Missense_Mutation p.A472V 0.38 tolerated(0.07) probably_damaging(0.998) TCGA-91-6829-01 15 76168613 76168613 G A UBE2Q2 Splice_Site p.X225_splice 0.38 TCGA-91-6829-01 15 78211609 78211609 T C RP11-114H24.7 Intron 0.09 TCGA-91-6829-01 15 83349905 83349905 G C AP3B2 Missense_Mutation p.L183V 0.14 deleterious(0.02) possibly_damaging(0.852) TCGA-91-6829-01 15 85488468 85488468 C A SLC28A1 3'UTR 0.32 TCGA-91-6829-01 15 88576157 88576157 T C NTRK3 Missense_Mutation p.T506A 0.12 deleterious(0.02) benign(0.078) TCGA-91-6829-01 15 89414627 89414627 G A ACAN Missense_Mutation p.E2321K 0.17 deleterious(0) probably_damaging(0.997) TCGA-91-6829-01 15 89865046 89865046 A G POLG Missense_Mutation p.I840T 0.17 deleterious(0) probably_damaging(1) TCGA-91-6829-01 15 99672530 99672530 A T SYNM Missense_Mutation p.Q1321L 0.19 deleterious(0) benign(0.074) TCGA-91-6829-01 16 14403171 14403171 G T MIR365A RNA 0.51 TCGA-91-6829-01 16 1825092 1825092 C T EME2 Silent p.A176A 0.10 TCGA-91-6829-01 16 3063924 3063924 G A CLDN9 Silent p.P187P 0.53 TCGA-91-6829-01 16 31539839 31539839 A G AHSP Missense_Mutation p.N46D 0.23 tolerated(0.12) benign(0.073) TCGA-91-6829-01 16 3349677 3349677 C T TIGD7 Missense_Mutation p.R313Q 0.12 tolerated(0.5) benign(0.008) TCGA-91-6829-01 16 4310143 4310143 G T TFAP4 Nonsense_Mutation p.S257* 0.56 TCGA-91-6829-01 16 56904030 56904030 C T SLC12A3 Silent p.S208S 0.05 TCGA-91-6829-01 16 67007010 67007010 C T CES3 3'UTR 0.33 TCGA-91-6829-01 16 72153084 72153084 A T PMFBP1 3'UTR 0.69 TCGA-91-6829-01 16 77393252 77393252 C A ADAMTS18 Missense_Mutation p.G429C 0.52 deleterious(0) probably_damaging(1) TCGA-91-6829-01 16 87377299 87377299 A G FBXO31 Missense_Mutation p.F188L 0.10 tolerated(0.06) benign(0.008) TCGA-91-6829-01 16 89245971 89245971 C A CDH15 Missense_Mutation p.P64T 0.25 tolerated(0.16) benign(0.004) TCGA-91-6829-01 16 89703053 89703053 G T DPEP1 Missense_Mutation p.M161I 0.16 deleterious(0.02) benign(0.297) TCGA-91-6829-01 16 90127890 90127890 C - PRDM7 Frame_Shift_Del p.G307Efs*10 0.26 TCGA-91-6829-01 17 10231408 10231408 G A MYH13 Silent p.I822I 0.57 TCGA-91-6829-01 17 10419268 10419268 G T MYH1 Missense_Mutation p.D160E 0.45 deleterious(0.01) possibly_damaging(0.489) TCGA-91-6829-01 17 10427854 10427854 C G MYH2 Missense_Mutation p.E1702Q 0.38 deleterious(0.03) possibly_damaging(0.882) TCGA-91-6829-01 17 11522884 11522884 C A DNAH9 Missense_Mutation p.P379Q 0.47 benign(0.335) TCGA-91-6829-01 17 11778317 11778317 G A DNAH9 Missense_Mutation p.D3432N 0.37 benign(0.119) TCGA-91-6829-01 17 12666801 12666801 C T MYOCD Missense_Mutation p.P934L 0.48 deleterious(0) probably_damaging(1) TCGA-91-6829-01 17 16049783 16049783 C A NCOR1 Missense_Mutation p.R330L 0.39 probably_damaging(0.996) TCGA-91-6829-01 17 17754212 17754212 C A TOM1L2 Missense_Mutation p.D445Y 0.42 deleterious(0.01) probably_damaging(0.993) TCGA-91-6829-01 17 26964909 26964909 C A KIAA0100 Missense_Mutation p.W572C 0.14 deleterious(0.01) benign(0.177) TCGA-91-6829-01 17 26964910 26964910 C A KIAA0100 Missense_Mutation p.W572L 0.14 tolerated(0.26) benign(0.126) TCGA-91-6829-01 17 29527486 29527486 G C NF1 Missense_Mutation p.G312A 0.35 tolerated(0.17) probably_damaging(0.991) TCGA-91-6829-01 17 33520748 33520748 A T SLC35G3 Nonsense_Mutation p.Y193* 0.40 TCGA-91-6829-01 17 33768061 33768061 T C SLFN13 Missense_Mutation p.I749M 0.22 deleterious(0.02) possibly_damaging(0.744) TCGA-91-6829-01 17 34416038 34416038 C A CCL3 Missense_Mutation p.D87Y 0.14 deleterious(0.05) benign(0.38) TCGA-91-6829-01 17 3629369 3629369 G C GSG2 Missense_Mutation p.D714H 0.10 deleterious(0.05) benign(0.027) TCGA-91-6829-01 17 3629701 3629701 C G GSG2 3'UTR 0.24 TCGA-91-6829-01 17 37347809 37347809 G C CACNB1 Missense_Mutation p.S70C 0.08 deleterious(0) probably_damaging(0.999) TCGA-91-6829-01 17 38925158 38925158 T A KRT26 Missense_Mutation p.Y387F 0.38 deleterious(0) probably_damaging(0.998) TCGA-91-6829-01 17 38948732 38948732 C G KRT28 Missense_Mutation p.E448Q 0.37 deleterious(0.03) probably_damaging(0.973) TCGA-91-6829-01 17 39597003 39597003 C A KRT38 Silent p.V57V 0.17 TCGA-91-6829-01 17 39684318 39684318 T C KRT19 Missense_Mutation p.Y61C 0.37 tolerated(0.11) possibly_damaging(0.52) TCGA-91-6829-01 17 40715990 40715990 C T COASY Missense_Mutation p.P267S 0.13 tolerated(0.69) possibly_damaging(0.849) TCGA-91-6829-01 17 46198968 46198968 G T SNX11 3'UTR 0.40 TCGA-91-6829-01 17 46703290 46703290 C G HOXB9 Silent p.A114A 0.41 TCGA-91-6829-01 17 4996298 4996298 G C ZFP3 Missense_Mutation p.C500S 0.10 tolerated(0.13) benign(0.022) TCGA-91-6829-01 17 58571945 58571945 C A APPBP2 Missense_Mutation p.M87I 0.51 tolerated(0.25) benign(0.048) TCGA-91-6829-01 17 60003898 60003898 A T INTS2 Silent p.L44L 0.11 TCGA-91-6829-01 17 67537936 67537936 G T MAP2K6 3'UTR 0.59 TCGA-91-6829-01 17 72350426 72350426 C A KIF19 Missense_Mutation p.L812M 0.47 tolerated(0.08) possibly_damaging(0.738) TCGA-91-6829-01 17 72937670 72937670 G C OTOP3 Missense_Mutation p.A86P 0.37 tolerated(0.05) probably_damaging(0.965) TCGA-91-6829-01 17 78013808 78013808 T C CCDC40 Silent p.Y97Y 0.06 TCGA-91-6829-01 17 78357710 78357710 C G RNF213 Silent p.L4768L 0.45 TCGA-91-6829-01 17 79090043 79090043 G A BAIAP2 Missense_Mutation p.A533T 0.47 tolerated_low_confidence(0.45) benign(0) TCGA-91-6829-01 17 8169551 8169551 G T PFAS Splice_Site p.X901_splice 0.42 TCGA-91-6829-01 18 13387641 13387641 G T LDLRAD4 5'UTR 0.08 TCGA-91-6829-01 18 13734586 13734586 A T RNMT Missense_Mutation p.S181C 0.16 deleterious(0) probably_damaging(1) TCGA-91-6829-01 18 14478156 14478156 G T CXADRP3 RNA 0.28 TCGA-91-6829-01 18 24445623 24445623 C T AQP4 Missense_Mutation p.G11S 0.22 tolerated_low_confidence(0.3) benign(0.001) TCGA-91-6829-01 18 2750424 2750424 C T SMCHD1 Missense_Mutation p.L1362F 0.52 tolerated(0.11) probably_damaging(0.981) TCGA-91-6829-01 18 2751313 2751313 C T SMCHD1 Silent p.I1401I 0.23 TCGA-91-6829-01 18 29052319 29052319 C A DSG3 Missense_Mutation p.P657Q 0.34 deleterious(0) probably_damaging(0.964) TCGA-91-6829-01 18 2923837 2923837 G A LPIN2 Missense_Mutation p.L704F 0.37 deleterious(0) probably_damaging(1) TCGA-91-6829-01 18 34854794 34854794 C G CELF4 Missense_Mutation p.A211P 0.30 deleterious(0.03) probably_damaging(0.964) TCGA-91-6829-01 18 34855077 34855077 C A CELF4 Splice_Site p.X193_splice 0.07 TCGA-91-6829-01 18 47429071 47429071 C T MYO5B Missense_Mutation p.E902K 0.27 tolerated(0.09) benign(0.032) TCGA-91-6829-01 18 48252469 48252469 G T MAPK4 Nonsense_Mutation p.E331* 0.08 TCGA-91-6829-01 18 48252472 48252472 G T MAPK4 Missense_Mutation p.D332Y 0.10 deleterious(0.03) probably_damaging(0.997) TCGA-91-6829-01 18 51057113 51057113 T C DCC 3'UTR 0.38 TCGA-91-6829-01 18 74701954 74701954 C A MBP Silent p.R80R 0.19 TCGA-91-6829-01 18 8783844 8783844 A T SOGA2 Missense_Mutation p.Q245L 0.47 tolerated(0.05) probably_damaging(0.99) TCGA-91-6829-01 19 1049420 1049420 G T ABCA7 Missense_Mutation p.G846C 0.30 deleterious(0) probably_damaging(1) TCGA-91-6829-01 19 1091841 1091841 T A POLR2E Missense_Mutation p.T100S 0.45 tolerated(0.51) benign(0.006) TCGA-91-6829-01 19 14877104 14877104 G T EMR2 Missense_Mutation p.P193T 0.40 tolerated(0.06) benign(0.074) TCGA-91-6829-01 19 15535040 15535040 T C WIZ Missense_Mutation p.T727A 0.20 deleterious(0.03) probably_damaging(0.995) TCGA-91-6829-01 19 17654231 17654231 C T FAM129C Missense_Mutation p.R510C 0.44 deleterious(0) probably_damaging(0.984) TCGA-91-6829-01 19 19427361 19427361 C A SUGP1 Nonsense_Mutation p.G26* 0.22 TCGA-91-6829-01 19 2878065 2878065 A G ZNF556 Missense_Mutation p.Y370C 0.35 deleterious(0.01) probably_damaging(0.994) TCGA-91-6829-01 19 30476162 30476162 G A URI1 Missense_Mutation p.R62Q 0.07 tolerated(1) benign(0.003) TCGA-91-6829-01 19 31048131 31048131 G A ZNF536 3'UTR 0.06 TCGA-91-6829-01 19 33355539 33355539 C T SLC7A9 Silent p.T77T 0.69 TCGA-91-6829-01 19 33424517 33424517 T A CEP89 Silent p.A242A 0.05 TCGA-91-6829-01 19 35849849 35849849 G T FFAR3 Silent p.S19S 0.30 TCGA-91-6829-01 19 36330257 36330257 G A NPHS1 Silent p.T997T 0.08 TCGA-91-6829-01 19 36557325 36557325 G T WDR62 Missense_Mutation p.W186L 0.89 deleterious(0.01) probably_damaging(0.923) TCGA-91-6829-01 19 3785136 3785136 C - MATK Intron 0.35 TCGA-91-6829-01 19 39876663 39876663 C T PAF1 Missense_Mutation p.D522N 0.16 tolerated_low_confidence(0.39) unknown(0) TCGA-91-6829-01 19 42213867 42213867 C T CEA Silent p.N111N 0.07 TCGA-91-6829-01 19 44273904 44273904 G T KCNN4 Missense_Mutation p.H299Q 0.44 deleterious(0) benign(0.063) TCGA-91-6829-01 19 44564659 44564659 G T ZNF223 Missense_Mutation p.G23W 0.40 deleterious(0) probably_damaging(0.928) TCGA-91-6829-01 19 45004336 45004336 C A ZNF180 5'UTR 0.45 TCGA-91-6829-01 19 4517573 4517573 C T PLIN4 Silent p.Q48Q 0.37 TCGA-91-6829-01 19 46173932 46173932 C A GIPR Missense_Mutation p.R38S 0.51 tolerated(0.29) benign(0.097) TCGA-91-6829-01 19 46345558 46345558 C A SYMPK Missense_Mutation p.R346L 0.43 deleterious(0.01) benign(0.097) TCGA-91-6829-01 19 46808501 46808501 G A HIF3A Splice_Site p.X73_splice 0.39 TCGA-91-6829-01 19 48205578 48205578 G A GLTSCR1 Missense_Mutation p.G1530D 0.50 possibly_damaging(0.73) TCGA-91-6829-01 19 48982510 48982510 C T CYTH2 3'UTR 0.39 TCGA-91-6829-01 19 498565 498565 C G MADCAM1 Missense_Mutation p.A136G 0.31 deleterious(0) probably_damaging(0.984) TCGA-91-6829-01 19 498569 498569 C A MADCAM1 Missense_Mutation p.H137Q 0.31 tolerated(0.11) probably_damaging(0.915) TCGA-91-6829-01 19 49898410 49898410 G A CCDC155 Missense_Mutation p.G66S 0.36 tolerated(0.29) probably_damaging(0.966) TCGA-91-6829-01 19 51767208 51767208 C - SIGLECL1 5'UTR 0.45 TCGA-91-6829-01 19 51918205 51918205 G T SIGLEC10 Silent p.P496P 0.44 TCGA-91-6829-01 19 51958820 51958820 G T SIGLEC8 Silent p.T301T 0.51 TCGA-91-6829-01 19 53625931 53625931 C G ZNF415 Intron 0.39 TCGA-91-6829-01 19 53793627 53793627 T C BIRC8 Translation_Start_Site p.M1? 0.38 deleterious(0.03) probably_damaging(0.94) TCGA-91-6829-01 19 54760611 54760611 C T LILRB5 Nonsense_Mutation p.W32* 0.56 TCGA-91-6829-01 19 55143585 55143585 C T LILRB1 Silent p.P186P 0.41 TCGA-91-6829-01 19 55417575 55417575 C T NCR1 Silent p.C10C 0.45 TCGA-91-6829-01 19 56319360 56319360 T C NLRP11 Missense_Mutation p.Y621C 0.58 deleterious(0.02) probably_damaging(0.936) TCGA-91-6829-01 19 56379097 56379097 C A NLRP4 Missense_Mutation p.P737T 0.29 tolerated(0.22) benign(0.017) TCGA-91-6829-01 19 56379098 56379098 C A NLRP4 Missense_Mutation p.P737H 0.29 tolerated(0.17) benign(0.023) TCGA-91-6829-01 19 56419176 56419176 C T NLRP13 Missense_Mutation p.C810Y 0.50 deleterious(0) probably_damaging(0.999) TCGA-91-6829-01 19 56953189 56953189 T C ZNF667 Missense_Mutation p.E392G 0.10 tolerated(0.58) benign(0.175) TCGA-91-6829-01 19 57328349 57328349 G C PEG3 Missense_Mutation p.I487M 0.14 deleterious(0.04) benign(0.265) TCGA-91-6829-01 19 581345 581345 T G BSG Missense_Mutation p.F275V 0.12 tolerated(0.29) benign(0.058) TCGA-91-6829-01 19 58551818 58551818 T C ZSCAN1 Missense_Mutation p.V124A 0.12 tolerated(0.84) benign(0.026) TCGA-91-6829-01 19 7184418 7184418 T A INSR Missense_Mutation p.N295Y 0.39 deleterious(0.02) possibly_damaging(0.534) TCGA-91-6829-01 19 9062533 9062533 C A MUC16 Missense_Mutation p.V8305L 0.38 unknown(0) TCGA-91-6829-01 19 9226066 9226066 G T OR7G1 Missense_Mutation p.A125D 0.41 deleterious(0) probably_damaging(0.999) TCGA-91-6829-01 19 9581105 9581105 A G ZNF560 Silent p.D137D 0.39 TCGA-91-6829-01 1 101198042 101198042 A T VCAM1 Missense_Mutation p.M532L 0.21 tolerated(0.55) benign(0.009) TCGA-91-6829-01 1 101704852 101704852 G T S1PR1 Missense_Mutation p.L104F 0.29 tolerated(0.06) benign(0.163) TCGA-91-6829-01 1 110146652 110146652 G T GNAT2 Silent p.V265V 0.17 TCGA-91-6829-01 1 110260114 110260114 C A GSTM5 3'UTR 0.16 TCGA-91-6829-01 1 110882839 110882839 G A RBM15 Missense_Mutation p.S271N 0.08 tolerated(0.4) benign(0) TCGA-91-6829-01 1 112298545 112298545 C T DDX20 5'UTR 0.40 TCGA-91-6829-01 1 119427738 119427738 G T TBX15 Missense_Mutation p.Q370K 0.37 deleterious(0.04) probably_damaging(0.93) TCGA-91-6829-01 1 119427739 119427739 G T TBX15 Silent p.S369S 0.38 TCGA-91-6829-01 1 119474366 119474366 C A TBX15 5'UTR 0.12 TCGA-91-6829-01 1 145293563 145293563 A G NBPF10 Missense_Mutation p.N53S 0.04 benign(0.193) TCGA-91-6829-01 1 145416654 145416654 T A HFE2 Missense_Mutation p.N333K 0.46 tolerated(0.77) benign(0.08) TCGA-91-6829-01 1 147381031 147381031 C G GJA8 Missense_Mutation p.Q317E 0.14 tolerated(0.26) benign(0.01) TCGA-91-6829-01 1 149761697 149761697 T G FCGR1A Missense_Mutation p.L216W 0.12 deleterious(0) probably_damaging(0.999) TCGA-91-6829-01 1 150636173 150636173 C - GOLPH3L Frame_Shift_Del p.A84Pfs*19 0.38 TCGA-91-6829-01 1 151115074 151115074 C G SEMA6C Missense_Mutation p.M8I 0.48 tolerated(0.28) benign(0.043) TCGA-91-6829-01 1 151314767 151314767 C T RFX5 Silent p.K582K 0.14 TCGA-91-6829-01 1 152191355 152191355 G A HRNR Missense_Mutation p.S917F 0.04 unknown(0) TCGA-91-6829-01 1 152280798 152280798 A T FLG Missense_Mutation p.S2188R 0.15 benign(0.307) TCGA-91-6829-01 1 152323313 152323313 G T FLG2 Missense_Mutation p.Q2317K 0.15 benign(0.042) TCGA-91-6829-01 1 152327330 152327330 C G FLG2 Missense_Mutation p.E978Q 0.04 unknown(0) TCGA-91-6829-01 1 152586301 152586301 G T LCE3B Missense_Mutation p.Q5H 0.56 deleterious_low_confidence(0) unknown(0) TCGA-91-6829-01 1 152732910 152732910 C A KPRP Nonsense_Mutation p.Y282* 0.39 TCGA-91-6829-01 1 152732911 152732911 C A KPRP Missense_Mutation p.L283M 0.39 tolerated(0.1) probably_damaging(0.914) TCGA-91-6829-01 1 152883610 152883610 A T IVL Missense_Mutation p.Q446L 0.50 deleterious(0) benign(0.02) TCGA-91-6829-01 1 153643479 153643480 CG A ILF2 5'UTR 0.09 TCGA-91-6829-01 1 156640299 156640299 C A NES Silent p.P1227P 0.47 TCGA-91-6829-01 1 158656363 158656364 - AGAT SPTA1 5'UTR 0.39 TCGA-91-6829-01 1 158669516 158669516 A T OR6K2 Silent p.A309A 0.12 TCGA-91-6829-01 1 158908969 158908969 A G PYHIN1 Missense_Mutation p.T171A 0.42 tolerated(0.66) benign(0.011) TCGA-91-6829-01 1 158911812 158911812 A T PYHIN1 Missense_Mutation p.I209F 0.49 tolerated(0.07) possibly_damaging(0.601) TCGA-91-6829-01 1 159921405 159921405 G A SLAMF9 3'UTR 0.22 TCGA-91-6829-01 1 160134024 160134024 C T ATP1A4 Missense_Mutation p.A286V 0.15 tolerated(0.07) benign(0.005) TCGA-91-6829-01 1 160616716 160616716 A T SLAMF1 Missense_Mutation p.L7H 0.09 deleterious(0.04) probably_damaging(0.941) TCGA-91-6829-01 1 165380320 165380320 G A RXRG Nonsense_Mutation p.R217* 0.46 TCGA-91-6829-01 1 165380321 165380321 G T RXRG Missense_Mutation p.S216R 0.44 deleterious(0.04) possibly_damaging(0.593) TCGA-91-6829-01 1 166039591 166039591 G T FAM78B Silent p.R225R 0.20 TCGA-91-6829-01 1 166039623 166039623 C T FAM78B Missense_Mutation p.R214K 0.19 tolerated(0.23) benign(0.085) TCGA-91-6829-01 1 167778883 167778883 A T ADCY10 3'UTR 0.17 TCGA-91-6829-01 1 168510285 168510285 T G XCL2 Missense_Mutation p.M84L 0.08 tolerated(0.54) benign(0.002) TCGA-91-6829-01 1 173726252 173726252 G A KLHL20 Missense_Mutation p.A369T 0.23 deleterious(0) probably_damaging(1) TCGA-91-6829-01 1 175106085 175106085 C A TNN Silent p.R1186R 0.21 TCGA-91-6829-01 1 179834280 179834281 - A IFRG15 Frame_Shift_Ins p.C11Lfs*8 0.18 TCGA-91-6829-01 1 181745277 181745277 A T CACNA1E Missense_Mutation p.E1727V 0.25 deleterious(0) benign(0.403) TCGA-91-6829-01 1 182025654 182025654 G T ZNF648 Missense_Mutation p.H498N 0.12 deleterious(0.02) possibly_damaging(0.625) TCGA-91-6829-01 1 182026579 182026579 C A ZNF648 Silent p.L189L 0.12 TCGA-91-6829-01 1 184764797 184764797 C A FAM129A Nonsense_Mutation p.E701* 0.24 TCGA-91-6829-01 1 190067188 190067188 G T BRINP3 Missense_Mutation p.P754Q 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-91-6829-01 1 192547357 192547357 C A RGS1 Missense_Mutation p.Q96K 0.16 deleterious(0.01) benign(0.433) TCGA-91-6829-01 1 19482030 19482030 A C UBR4 Missense_Mutation p.Y2069D 0.09 possibly_damaging(0.883) TCGA-91-6829-01 1 198608361 198608361 C A PTPRC 5'UTR 0.20 TCGA-91-6829-01 1 201843470 201843470 C G IPO9 Missense_Mutation p.R935G 0.06 tolerated(0.26) benign(0.008) TCGA-91-6829-01 1 202245436 202245436 G T LGR6 Missense_Mutation p.R144L 0.18 deleterious(0.01) probably_damaging(1) TCGA-91-6829-01 1 202301011 202301011 C A UBE2T Missense_Mutation p.K182N 0.22 deleterious_low_confidence(0) possibly_damaging(0.632) TCGA-91-6829-01 1 202887329 202887329 C A KLHL12 Silent p.V179V 0.12 TCGA-91-6829-01 1 203830805 203830805 G T SNRPE Missense_Mutation p.Q6H 0.07 deleterious(0.03) possibly_damaging(0.739) TCGA-91-6829-01 1 207195296 207195296 G C C1orf116 3'UTR 0.10 TCGA-91-6829-01 1 209951496 209951496 G A TRAF3IP3 Silent p.V410V 0.22 TCGA-91-6829-01 1 214557623 214557623 T A PTPN14 Silent p.P525P 0.22 TCGA-91-6829-01 1 215793486 215793486 G C KCTD3 Missense_Mutation p.R658S 0.21 deleterious_low_confidence(0.01) benign(0.445) TCGA-91-6829-01 1 216497008 216497008 G T USH2A Missense_Mutation p.T453K 0.20 probably_damaging(0.997) TCGA-91-6829-01 1 220805550 220805550 G A MARK1 Missense_Mutation p.M339I 0.06 deleterious(0.04) possibly_damaging(0.554) TCGA-91-6829-01 1 222717255 222717255 C A HHIPL2 Missense_Mutation p.D200Y 0.16 deleterious(0) probably_damaging(0.983) TCGA-91-6829-01 1 22333950 22333950 G T CELA3A Missense_Mutation p.G195V 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-91-6829-01 1 229567267 229567267 G T ACTA1 Silent p.I371I 0.13 TCGA-91-6829-01 1 229594020 229594020 C A NUP133 Missense_Mutation p.L956F 0.37 deleterious(0.01) probably_damaging(0.992) TCGA-91-6829-01 1 229661863 229661863 C A ABCB10 Nonsense_Mutation p.E576* 0.19 TCGA-91-6829-01 1 229661864 229661864 C A ABCB10 Splice_Site p.X576_splice 0.20 TCGA-91-6829-01 1 230846486 230846486 G A AGT Silent p.Y37Y 0.36 TCGA-91-6829-01 1 235969542 235969542 G C LYST Missense_Mutation p.S965C 0.38 deleterious_low_confidence(0) possibly_damaging(0.617) TCGA-91-6829-01 1 236906299 236906299 A T ACTN2 Missense_Mutation p.E404V 0.17 deleterious(0.03) possibly_damaging(0.69) TCGA-91-6829-01 1 236906314 236906314 A G ACTN2 Missense_Mutation p.K409R 0.22 tolerated(0.07) probably_damaging(0.999) TCGA-91-6829-01 1 236912547 236912547 A G ACTN2 Missense_Mutation p.S547G 0.24 deleterious(0.01) benign(0.012) TCGA-91-6829-01 1 247582216 247582216 C A NLRP3 Silent p.P40P 0.24 TCGA-91-6829-01 1 247587692 247587692 G T NLRP3 Missense_Mutation p.G316V 0.19 deleterious(0.04) possibly_damaging(0.868) TCGA-91-6829-01 1 247614514 247614514 T A OR2B11 Silent p.L257L 0.16 TCGA-91-6829-01 1 247614915 247614915 G C OR2B11 Missense_Mutation p.L124V 0.17 deleterious(0.04) probably_damaging(0.978) TCGA-91-6829-01 1 247751975 247751975 A T OR2G2 Missense_Mutation p.Y105F 0.18 tolerated(0.53) probably_damaging(0.984) TCGA-91-6829-01 1 247769494 247769494 A T OR2G3 Missense_Mutation p.S203C 0.21 tolerated(0.1) possibly_damaging(0.582) TCGA-91-6829-01 1 247835474 247835474 C G OR13G1 Missense_Mutation p.Q290H 0.20 deleterious(0) benign(0.275) TCGA-91-6829-01 1 24786969 24786969 A G NIPAL3 Splice_Site p.X288_splice 0.13 TCGA-91-6829-01 1 247902345 247902345 G C OR14K1 Missense_Mutation p.M143I 0.06 tolerated(0.18) benign(0.094) TCGA-91-6829-01 1 248224682 248224682 G T OR2L3 Missense_Mutation p.R233S 0.18 deleterious(0) possibly_damaging(0.697) TCGA-91-6829-01 1 25555610 25555610 T G SYF2 Missense_Mutation p.E46A 0.29 deleterious(0.04) possibly_damaging(0.566) TCGA-91-6829-01 1 26526372 26526372 C T CATSPER4 Intron 0.21 TCGA-91-6829-01 1 29587414 29587414 A C PTPRU Silent p.A381A 0.33 TCGA-91-6829-01 1 31532281 31532281 G C PUM1 Missense_Mutation p.Q45E 0.06 tolerated_low_confidence(0.28) benign(0.042) TCGA-91-6829-01 1 32800178 32800178 A G MARCKSL1 3'UTR 0.29 TCGA-91-6829-01 1 33760575 33760575 C T ZNF362 Missense_Mutation p.P316S 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-91-6829-01 1 34090212 34090212 C T CSMD2 Silent p.R1804R 0.07 TCGA-91-6829-01 1 37356572 37356572 A T GRIK3 Missense_Mutation p.Y81N 0.16 deleterious(0.04) probably_damaging(0.989) TCGA-91-6829-01 1 41474345 41474345 G A CTPS1 Missense_Mutation p.D470N 0.06 tolerated(1) benign(0.001) TCGA-91-6829-01 1 43748350 43748350 T G C1orf210 3'UTR 0.44 TCGA-91-6829-01 1 43890055 43890055 C T SZT2 Missense_Mutation p.P808L 0.26 deleterious(0) benign(0.25) TCGA-91-6829-01 1 45506070 45506070 T A ZSWIM5 Nonsense_Mutation p.K584* 0.11 TCGA-91-6829-01 1 47395733 47395733 A T CYP4A11 3'UTR 0.19 TCGA-91-6829-01 1 47746387 47746387 T A STIL Silent p.S581S 0.26 TCGA-91-6829-01 1 57480745 57480745 G T DAB1 Missense_Mutation p.Q419K 0.15 deleterious(0) probably_damaging(0.997) TCGA-91-6829-01 1 57480986 57480986 G A DAB1 Silent p.P338P 0.21 TCGA-91-6829-01 1 57528586 57528586 A G DAB1 Missense_Mutation p.Y232H 0.27 tolerated(0.12) benign(0.132) TCGA-91-6829-01 1 63128718 63128719 - A DOCK7 Frame_Shift_Ins p.G41Vfs*41 0.14 TCGA-91-6829-01 1 65300289 65300289 T A JAK1 Missense_Mutation p.S1141C 0.23 deleterious(0) possibly_damaging(0.453) TCGA-91-6829-01 1 6639736 6639736 C T TAS1R1 3'UTR 0.40 TCGA-91-6829-01 1 67243129 67243129 C T TCTEX1D1 Missense_Mutation p.L178F 0.18 tolerated(1) benign(0.002) TCGA-91-6829-01 1 68173367 68173367 C G GNG12 Translation_Start_Site p.M1? 0.10 deleterious(0.01) possibly_damaging(0.775) TCGA-91-6829-01 1 70291429 70291429 A T LRRC7 Splice_Site p.X103_splice 0.06 TCGA-91-6829-01 1 79404923 79404923 G T ELTD1 Missense_Mutation p.H116N 0.26 deleterious_low_confidence(0) benign(0.224) TCGA-91-6829-01 1 7993221 7993221 C G TNFRSF9 Splice_Site p.X227_splice 0.07 TCGA-91-6829-01 1 86200648 86200648 C A COL24A1 Splice_Site p.X1595_splice 0.36 TCGA-91-6829-01 20 11904408 11904408 C T BTBD3 3'UTR 0.18 TCGA-91-6829-01 20 20610186 20610186 C A RALGAPA2 Missense_Mutation p.G352C 0.35 deleterious(0.01) benign(0.003) TCGA-91-6829-01 20 2097734 2097734 G T STK35 Missense_Mutation p.A439S 0.42 tolerated(0.81) benign(0.336) TCGA-91-6829-01 20 25507047 25507047 G A NINL Silent p.A59A 0.32 TCGA-91-6829-01 20 25657370 25657370 C G ZNF337 Missense_Mutation p.R185P 0.19 tolerated(0.19) benign(0.119) TCGA-91-6829-01 20 2776685 2776685 G T CPXM1 Missense_Mutation p.H455Q 0.24 tolerated(0.07) benign(0.045) TCGA-91-6829-01 20 31692679 31692679 G T BPIFB4 Missense_Mutation p.A582S 0.38 tolerated(0.57) benign(0.075) TCGA-91-6829-01 20 34135189 34135189 T C ERGIC3 Missense_Mutation p.F132L 0.23 tolerated(0.33) benign(0.002) TCGA-91-6829-01 20 35060244 35060244 C T DLGAP4 Missense_Mutation p.R42C 0.34 tolerated(0.2) possibly_damaging(0.899) TCGA-91-6829-01 20 35060397 35060397 C A DLGAP4 Missense_Mutation p.Q93K 0.12 tolerated(0.29) possibly_damaging(0.798) TCGA-91-6829-01 20 36779382 36779382 A G TGM2 Missense_Mutation p.S171P 0.09 deleterious(0.01) possibly_damaging(0.81) TCGA-91-6829-01 20 40714370 40714370 G A PTPRT Missense_Mutation p.R1324W 0.22 deleterious(0.01) probably_damaging(0.931) TCGA-91-6829-01 20 42143696 42143696 G C L3MBTL1 Missense_Mutation p.E162Q 0.15 tolerated(0.2) benign(0.206) TCGA-91-6829-01 20 46275899 46275899 G T NCOA3 Missense_Mutation p.G1112V 0.38 deleterious(0.02) probably_damaging(0.918) TCGA-91-6829-01 20 4776565 4776565 G T RASSF2 Silent p.G61G 0.23 TCGA-91-6829-01 20 47838011 47838011 G A DDX27 Missense_Mutation p.R70Q 0.18 tolerated(0.1) benign(0.022) TCGA-91-6829-01 20 47879868 47879868 T C ZNFX1 Intron 0.14 TCGA-91-6829-01 20 51872088 51872088 C A TSHZ2 Silent p.A697A 0.07 TCGA-91-6829-01 20 55033542 55033542 G - CASS4 Frame_Shift_Del p.E701Rfs*47 0.12 TCGA-91-6829-01 20 57415891 57415891 C G RP4-806M20.3 5'Flank 0.10 TCGA-91-6829-01 20 57768489 57768489 C A ZNF831 Silent p.V805V 0.64 TCGA-91-6829-01 20 57829259 57829259 G T ZNF831 Missense_Mutation p.V1499L 0.39 tolerated(0.33) benign(0.007) TCGA-91-6829-01 20 58514485 58514485 A C PPP1R3D Missense_Mutation p.F168V 0.16 deleterious(0) possibly_damaging(0.636) TCGA-91-6829-01 20 61978135 61978135 C T CHRNA4 Silent p.G613G 0.51 TCGA-91-6829-01 20 62172184 62172184 C A SRMS Missense_Mutation p.R485I 0.13 deleterious(0) possibly_damaging(0.653) TCGA-91-6829-01 20 62839102 62839102 G T MYT1 Missense_Mutation p.G185C 0.16 benign(0.049) TCGA-91-6829-01 20 62904645 62904645 C G PCMTD2 Missense_Mutation p.H260D 0.15 tolerated(0.63) benign(0.002) TCGA-91-6829-01 20 9360751 9360751 C T PLCB4 Silent p.A265A 0.30 TCGA-91-6829-01 20 9368140 9368141 AG T PLCB4 Frame_Shift_Del p.K365Nfs*8 0.11 TCGA-91-6829-01 21 10910351 10910351 C G TPTE Missense_Mutation p.G469R 0.11 deleterious(0.03) possibly_damaging(0.828) TCGA-91-6829-01 21 30961211 30961211 G T GRIK1 Missense_Mutation p.A506D 0.31 deleterious(0) probably_damaging(0.998) TCGA-91-6829-01 21 31045363 31045363 G C GRIK1 Silent p.G222G 0.04 TCGA-91-6829-01 21 31964947 31964947 G A KRTAP6-3 Silent p.L54L 0.49 TCGA-91-6829-01 21 32253288 32253288 T C KRTAP11-1 3'UTR 0.39 TCGA-91-6829-01 21 33671311 33671311 C A MRAP Missense_Mutation p.P10Q 0.27 tolerated(0.21) probably_damaging(0.998) TCGA-91-6829-01 21 33671312 33671312 A T MRAP Silent p.P10P 0.29 TCGA-91-6829-01 21 37572692 37572692 G A DOPEY2 Silent p.L128L 0.12 TCGA-91-6829-01 21 43161678 43161678 G A RIPK4 Nonsense_Mutation p.R559* 0.11 TCGA-91-6829-01 21 43857644 43857644 C T UBASH3A Silent p.A480A 0.24 TCGA-91-6829-01 21 44845963 44845963 G T SIK1 Silent p.T32T 0.21 TCGA-91-6829-01 22 19776217 19776217 A G GNB1L 3'UTR 0.38 TCGA-91-6829-01 22 22937303 22937303 C T IGLV3-32 Nonsense_Mutation p.Q41* 0.34 TCGA-91-6829-01 22 36587462 36587462 G T APOL4 Silent p.A238A 0.27 TCGA-91-6829-01 22 39178760 39178760 A C DNAL4 5'UTR 0.40 TCGA-91-6829-01 22 40283671 40283671 C A ENTHD1 Missense_Mutation p.D28Y 0.41 deleterious(0) probably_damaging(1) TCGA-91-6829-01 2 103299840 103299840 C T SLC9A2 Silent p.F375F 0.08 TCGA-91-6829-01 2 107040917 107040917 C A RGPD3 Missense_Mutation p.R1169L 0.21 deleterious(0.02) possibly_damaging(0.628) TCGA-91-6829-01 2 109381301 109381301 A G RANBP2 Missense_Mutation p.I1436V 0.30 tolerated(0.77) benign(0.194) TCGA-91-6829-01 2 118864367 118864367 A G INSIG2 Missense_Mutation p.I142V 0.45 tolerated(0.39) benign(0.003) TCGA-91-6829-01 2 118866015 118866015 G T INSIG2 3'UTR 0.46 TCGA-91-6829-01 2 119739773 119739773 G C MARCO Missense_Mutation p.V315L 0.44 deleterious(0.04) unknown(0) TCGA-91-6829-01 2 131520777 131520777 G T AMER3 Nonsense_Mutation p.E378* 0.40 TCGA-91-6829-01 2 136362452 136362452 A T R3HDM1 Missense_Mutation p.T13S 0.41 tolerated(0.64) benign(0.003) TCGA-91-6829-01 2 143913138 143913138 A T ARHGAP15 Nonsense_Mutation p.R27* 0.34 TCGA-91-6829-01 2 152466583 152466583 G T NEB Missense_Mutation p.Q4024K 0.50 benign(0.004) TCGA-91-6829-01 2 152466584 152466584 G T NEB Silent p.A4023A 0.49 TCGA-91-6829-01 2 152470891 152470891 C A NEB Missense_Mutation p.V3834L 0.47 possibly_damaging(0.676) TCGA-91-6829-01 2 158300456 158300456 G C CYTIP Missense_Mutation p.S26C 0.09 tolerated(0.06) benign(0.417) TCGA-91-6829-01 2 1652063 1652063 C G PXDN Silent p.R1163R 0.22 TCGA-91-6829-01 2 1653374 1653374 G T PXDN Missense_Mutation p.H726Q 0.27 deleterious(0) probably_damaging(0.924) TCGA-91-6829-01 2 166856287 166856287 C A SCN1A Splice_Site p.X1429_splice 0.39 TCGA-91-6829-01 2 166901716 166901716 C T SCN1A Missense_Mutation p.R500Q 0.12 tolerated(0.06) benign(0.061) TCGA-91-6829-01 2 167055686 167055686 G C SCN9A Silent p.V1810V 0.15 TCGA-91-6829-01 2 168105070 168105070 G A XIRP2 Missense_Mutation p.G2390R 0.38 possibly_damaging(0.517) TCGA-91-6829-01 2 172952791 172952791 G C DLX1 Missense_Mutation p.A192P 0.47 tolerated(0.2) benign(0.017) TCGA-91-6829-01 2 173435551 173435551 A T PDK1 Missense_Mutation p.K315M 0.49 deleterious(0) probably_damaging(0.969) TCGA-91-6829-01 2 174228182 174228182 A C CDCA7 Missense_Mutation p.K205Q 0.35 deleterious(0.05) possibly_damaging(0.828) TCGA-91-6829-01 2 176964621 176964621 C G HOXD12 Missense_Mutation p.P31R 0.18 deleterious(0.05) possibly_damaging(0.575) TCGA-91-6829-01 2 17697591 17697591 C T RAD51AP2 Missense_Mutation p.D698N 0.17 tolerated(0.35) benign(0.004) TCGA-91-6829-01 2 179318348 179318349 - T DFNB59 Splice_Site p.X71_splice 0.22 TCGA-91-6829-01 2 179391982 179391982 G C TTN Silent p.G35911G 0.10 TCGA-91-6829-01 2 179467007 179467007 A G TTN Splice_Site p.X18374_splice 0.05 TCGA-91-6829-01 2 179641663 179641663 C A TTN Missense_Mutation p.C1643F 0.49 TCGA-91-6829-01 2 210968932 210968932 C A KANSL1L Missense_Mutation p.G442W 0.33 deleterious(0.04) possibly_damaging(0.819) TCGA-91-6829-01 2 211542680 211542680 A G CPS1 Missense_Mutation p.R1498G 0.10 tolerated(0.06) benign(0.397) TCGA-91-6829-01 2 218925443 218925443 G C CXCR2P1 RNA 0.20 TCGA-91-6829-01 2 220355136 220355136 G C SPEG Missense_Mutation p.R2976P 0.35 possibly_damaging(0.886) TCGA-91-6829-01 2 220424202 220424202 T A OBSL1 Missense_Mutation p.I991L 0.43 tolerated(0.88) benign(0.001) TCGA-91-6829-01 2 230667127 230667127 G A TRIP12 Missense_Mutation p.T941I 0.37 tolerated(0.21) benign(0.186) TCGA-91-6829-01 2 231067407 231067407 G C SP110 Silent p.L312L 0.05 TCGA-91-6829-01 2 233745956 233745956 G T NGEF Nonsense_Mutation p.C614* 0.26 TCGA-91-6829-01 2 237415979 237415979 C T IQCA1 5'UTR 0.14 TCGA-91-6829-01 2 240969860 240969861 GG T OR6B2 5'UTR 0.22 TCGA-91-6829-01 2 27446491 27446491 G A CAD Silent p.L290L 0.04 TCGA-91-6829-01 2 29551274 29551274 C G ALK Silent p.G452G 0.11 TCGA-91-6829-01 2 32640490 32640490 C - BIRC6 Frame_Shift_Del p.K712Sfs*9 0.28 TCGA-91-6829-01 2 39944345 39944345 G A TMEM178A Missense_Mutation p.R283Q 0.12 deleterious(0.02) benign(0.022) TCGA-91-6829-01 2 40656505 40656505 C A SLC8A1 Missense_Mutation p.G306C 0.25 deleterious(0) possibly_damaging(0.827) TCGA-91-6829-01 2 45829073 45829073 C A SRBD1 Missense_Mutation p.G77V 0.26 tolerated_low_confidence(0.17) benign(0.001) TCGA-91-6829-01 2 49190767 49190767 C A FSHR Missense_Mutation p.R398M 0.27 deleterious(0) probably_damaging(0.99) TCGA-91-6829-01 2 49216159 49216159 C A FSHR Nonsense_Mutation p.E161* 0.22 TCGA-91-6829-01 2 50724546 50724546 G T NRXN1 Missense_Mutation p.T975K 0.37 deleterious(0) probably_damaging(0.973) TCGA-91-6829-01 2 50847242 50847242 A G NRXN1 Missense_Mutation p.F453S 0.23 deleterious(0.02) benign(0.262) TCGA-91-6829-01 2 5833567 5833567 G C SOX11 Missense_Mutation p.Q238H 0.22 deleterious(0.02) benign(0.001) TCGA-91-6829-01 2 58366863 58366863 C T VRK2 Nonsense_Mutation p.Q307* 0.15 TCGA-91-6829-01 2 69098276 69098276 G T BMP10 Missense_Mutation p.P72H 0.35 deleterious(0.01) probably_damaging(0.984) TCGA-91-6829-01 2 70451749 70451749 C A TIA1 Silent p.V137V 0.13 TCGA-91-6829-01 2 73659341 73659341 G T ALMS1 Nonsense_Mutation p.E452* 0.21 TCGA-91-6829-01 2 73679254 73679254 A G ALMS1 Missense_Mutation p.D1866G 0.22 benign(0.331) TCGA-91-6829-01 2 79385781 79385781 G A REG3A Missense_Mutation p.A64V 0.40 deleterious(0) probably_damaging(1) TCGA-91-6829-01 2 80101247 80101247 G T CTNNA2 Missense_Mutation p.G211W 0.20 deleterious(0) probably_damaging(0.955) TCGA-91-6829-01 2 80529979 80529979 C G LRRTM1 Silent p.V322V 0.23 TCGA-91-6829-01 2 90229080 90229080 C A IGKV1D-42 Missense_Mutation p.P6T 0.20 deleterious(0) probably_damaging(0.998) TCGA-91-6829-01 2 95713751 95713751 C T MAL Silent p.P47P 0.10 TCGA-91-6829-01 2 97007797 97007797 C G NCAPH Missense_Mutation p.D94E 0.06 tolerated(0.27) benign(0.075) TCGA-91-6829-01 2 99008327 99008327 G T CNGA3 Missense_Mutation p.R189S 0.18 deleterious(0) probably_damaging(0.951) TCGA-91-6829-01 3 100605099 100605099 G T ABI3BP Missense_Mutation p.T184N 0.33 deleterious(0) benign(0.403) TCGA-91-6829-01 3 101284693 101284693 G T TRMT10C Missense_Mutation p.M356I 0.32 deleterious(0) possibly_damaging(0.633) TCGA-91-6829-01 3 101370066 101370066 C A ZBTB11 Missense_Mutation p.A1036S 0.34 tolerated_low_confidence(0.81) benign(0.012) TCGA-91-6829-01 3 108188944 108188944 C A MYH15 Missense_Mutation p.W520L 0.50 deleterious(0) probably_damaging(0.95) TCGA-91-6829-01 3 113955154 113955154 G A ZNF80 Silent p.Y256Y 0.13 TCGA-91-6829-01 3 12856744 12856744 C A CAND2 Missense_Mutation p.P371T 0.58 tolerated(0.57) benign(0.002) TCGA-91-6829-01 3 12856745 12856745 C A CAND2 Missense_Mutation p.P371H 0.57 tolerated(0.15) benign(0.443) TCGA-91-6829-01 3 12983333 12983333 C A IQSEC1 Missense_Mutation p.G33V 0.56 deleterious_low_confidence(0.05) benign(0.367) TCGA-91-6829-01 3 132056327 132056327 C T ACPP Missense_Mutation p.P162S 0.43 deleterious(0.02) benign(0.324) TCGA-91-6829-01 3 133672506 133672506 C A SLCO2A1 Splice_Site p.X242_splice 0.48 TCGA-91-6829-01 3 136078061 136078061 C T STAG1 Silent p.L955L 0.54 TCGA-91-6829-01 3 142224081 142224081 T G ATR Missense_Mutation p.E1699A 0.50 deleterious(0.03) probably_damaging(0.999) TCGA-91-6829-01 3 143271264 143271264 G T SLC9A9 Silent p.V343V 0.54 TCGA-91-6829-01 3 145912119 145912119 A T PLSCR4 3'UTR 0.52 TCGA-91-6829-01 3 148919898 148919898 C A CP Missense_Mutation p.G447C 0.50 deleterious(0) probably_damaging(0.999) TCGA-91-6829-01 3 152058724 152058724 A G TMEM14E 5'UTR 0.12 TCGA-91-6829-01 3 167728113 167728113 C A GOLIM4 Nonsense_Mutation p.E679* 0.34 TCGA-91-6829-01 3 168830606 168830606 C A MECOM Missense_Mutation p.R726M 0.26 deleterious(0) probably_damaging(0.94) TCGA-91-6829-01 3 168830608 168830608 C A MECOM Missense_Mutation p.L725F 0.27 deleterious(0.01) possibly_damaging(0.735) TCGA-91-6829-01 3 180319983 180319983 C A TTC14 5'UTR 0.24 TCGA-91-6829-01 3 182775145 182775145 C A MCCC1 Missense_Mutation p.C276F 0.24 deleterious(0) probably_damaging(1) TCGA-91-6829-01 3 183818183 183818183 G T HTR3E Missense_Mutation p.R8L 0.20 tolerated_low_confidence(0.38) possibly_damaging(0.726) TCGA-91-6829-01 3 193052754 193052754 C A ATP13A5 Missense_Mutation p.G360W 0.66 deleterious(0.01) probably_damaging(0.997) TCGA-91-6829-01 3 194081122 194081122 A G LRRC15 Silent p.F223F 0.55 TCGA-91-6829-01 3 33626403 33626403 C A CLASP2 Missense_Mutation p.R694L 0.44 deleterious(0.04) probably_damaging(0.996) TCGA-91-6829-01 3 36779284 36779284 C A DCLK3 Missense_Mutation p.R289S 0.47 deleterious(0.02) benign(0.039) TCGA-91-6829-01 3 39307550 39307550 G C CX3CR1 Missense_Mutation p.L183V 0.06 tolerated(0.8) possibly_damaging(0.883) TCGA-91-6829-01 3 39307625 39307625 C A CX3CR1 Missense_Mutation p.D158Y 0.51 deleterious(0) probably_damaging(1) TCGA-91-6829-01 3 43618386 43618386 T A ANO10 Silent p.P320P 0.44 TCGA-91-6829-01 3 44764010 44764010 G T ZNF502 3'UTR 0.59 TCGA-91-6829-01 3 51696623 51696623 C A RAD54L2 Missense_Mutation p.S1197R 0.12 tolerated_low_confidence(0.09) benign(0.068) TCGA-91-6829-01 3 51696624 51696624 A C RAD54L2 Missense_Mutation p.T1198P 0.11 tolerated_low_confidence(0.29) benign(0.001) TCGA-91-6829-01 3 51752241 51752241 T C GRM2 3'UTR 0.22 TCGA-91-6829-01 3 51937335 51937335 T A IQCF1 5'UTR 0.55 TCGA-91-6829-01 3 52088240 52088240 C T DUSP7 Missense_Mutation p.R223Q 0.58 tolerated(0.13) probably_damaging(0.99) TCGA-91-6829-01 3 58368341 58368341 A G PXK Missense_Mutation p.N101S 0.17 deleterious(0.02) benign(0.236) TCGA-91-6829-01 3 65367627 65367627 C G MAGI1 Missense_Mutation p.V876L 0.27 deleterious(0) probably_damaging(0.94) TCGA-91-6829-01 3 89445102 89445102 C A EPHA3 Nonsense_Mutation p.Y474* 0.40 TCGA-91-6829-01 3 9768831 9768831 G T CPNE9 Silent p.V479V 0.22 TCGA-91-6829-01 3 98217388 98217388 C A OR5K2 Missense_Mutation p.F288L 0.28 tolerated(0.14) benign(0.029) TCGA-91-6829-01 4 1073435 1073435 C A RNF212 Missense_Mutation p.R169I 0.15 deleterious(0) probably_damaging(0.937) TCGA-91-6829-01 4 110925712 110925712 C G EGF Missense_Mutation p.S1075R 0.40 tolerated(0.46) benign(0.036) TCGA-91-6829-01 4 119944675 119944675 T A SYNPO2 Missense_Mutation p.Y66N 0.47 deleterious(0.01) benign(0.361) TCGA-91-6829-01 4 159493974 159493974 T C RXFP1 Silent p.D58D 0.16 TCGA-91-6829-01 4 16513703 16513703 G C LDB2 Missense_Mutation p.Q214E 0.24 deleterious(0.01) possibly_damaging(0.734) TCGA-91-6829-01 4 176622818 176622818 G T GPM6A Nonsense_Mutation p.C46* 0.35 TCGA-91-6829-01 4 183603130 183603130 G T TENM3 Silent p.T666T 0.38 TCGA-91-6829-01 4 187130045 187130045 G C CYP4V2 Missense_Mutation p.E373Q 0.34 tolerated(0.07) probably_damaging(0.948) TCGA-91-6829-01 4 20530581 20530581 A G SLIT2 Missense_Mutation p.D491G 0.22 deleterious(0) probably_damaging(0.995) TCGA-91-6829-01 4 22422577 22422577 C T GPR125 Missense_Mutation p.G581R 0.33 tolerated(0.48) possibly_damaging(0.775) TCGA-91-6829-01 4 22749403 22749404 - T GBA3 Frame_Shift_Ins p.I258Yfs*6 0.18 TCGA-91-6829-01 4 3176790 3176790 C T HTT Silent p.L1455L 0.24 TCGA-91-6829-01 4 3441279 3441279 G C RGS12 Silent p.A1404A 0.21 TCGA-91-6829-01 4 4190608 4190608 G T OTOP1 Silent p.V587V 0.08 TCGA-91-6829-01 4 42145827 42145827 C G BEND4 Missense_Mutation p.Q224H 0.14 tolerated_low_confidence(0.09) benign(0.004) TCGA-91-6829-01 4 46737239 46737239 T C COX7B2 5'UTR 0.41 TCGA-91-6829-01 4 47163293 47163293 C A GABRB1 Missense_Mutation p.Q90K 0.20 deleterious(0) probably_damaging(1) TCGA-91-6829-01 4 48037822 48037822 C A NIPAL1 Missense_Mutation p.T289K 0.24 deleterious(0) probably_damaging(0.95) TCGA-91-6829-01 4 48152932 48152932 C T TEC Missense_Mutation p.D274N 0.20 tolerated(0.24) benign(0.022) TCGA-91-6829-01 4 5624461 5624461 C A EVC2 Silent p.V768V 0.22 TCGA-91-6829-01 4 62903472 62903472 C - LPHN3 Frame_Shift_Del p.L1138Cfs*58 0.23 TCGA-91-6829-01 4 6578375 6578375 G T MAN2B2 Missense_Mutation p.R70L 0.16 deleterious(0) probably_damaging(0.983) TCGA-91-6829-01 4 68788579 68788579 C T TMPRSS11A Missense_Mutation p.A199T 0.30 deleterious(0.05) benign(0.167) TCGA-91-6829-01 4 88029353 88029353 C T AFF1 Silent p.S473S 0.44 TCGA-91-6829-01 4 99962203 99962203 G A METAP1 Missense_Mutation p.E148K 0.28 tolerated(0.06) benign(0.213) TCGA-91-6829-01 5 1085503 1085503 T A SLC12A7 Missense_Mutation p.Y254F 0.14 deleterious(0.03) probably_damaging(0.996) TCGA-91-6829-01 5 109051926 109051926 C T MAN2A1 Missense_Mutation p.L166F 0.38 deleterious(0) probably_damaging(0.999) TCGA-91-6829-01 5 111531407 111531407 T C EPB41L4A Splice_Site p.X459_splice 0.32 TCGA-91-6829-01 5 11732329 11732329 C A CTNND2 Silent p.L31L 0.21 TCGA-91-6829-01 5 120022181 120022181 T C PRR16 Missense_Mutation p.V208A 0.25 deleterious_low_confidence(0.01) benign(0.234) TCGA-91-6829-01 5 126783246 126783246 C A MEGF10 Intron 0.30 TCGA-91-6829-01 5 140503842 140503842 G A PCDHB4 Silent p.L754L 0.45 TCGA-91-6829-01 5 140537383 140537383 G T PCDHB17 3'UTR 0.48 TCGA-91-6829-01 5 140590281 140590281 G T PCDHB12 Missense_Mutation p.W601L 0.11 deleterious_low_confidence(0) possibly_damaging(0.652) TCGA-91-6829-01 5 140712360 140712360 C G PCDHGA1 Silent p.V703V 0.55 TCGA-91-6829-01 5 140724427 140724427 A C PCDHGA3 Missense_Mutation p.Q276P 0.52 deleterious_low_confidence(0) possibly_damaging(0.846) TCGA-91-6829-01 5 149501587 149501587 C A PDGFRB Missense_Mutation p.G734W 0.45 tolerated(0.15) probably_damaging(0.959) TCGA-91-6829-01 5 156895745 156895745 T A NIPAL4 Missense_Mutation p.V179D 0.50 deleterious(0.01) benign(0.367) TCGA-91-6829-01 5 168098301 168098301 G T SLIT3 Nonsense_Mutation p.C1343* 0.38 TCGA-91-6829-01 5 175528581 175528581 G T FAM153B Nonsense_Mutation p.E144* 0.32 TCGA-91-6829-01 5 176520201 176520201 G T FGFR4 Missense_Mutation p.A374S 0.15 tolerated(0.22) benign(0.019) TCGA-91-6829-01 5 24487955 24487955 G A CDH10 Silent p.P728P 0.06 TCGA-91-6829-01 5 2749627 2749627 T A IRX2 Missense_Mutation p.E175V 0.20 deleterious(0) probably_damaging(0.996) TCGA-91-6829-01 5 31294121 31294121 G T CDH6 Missense_Mutation p.G94V 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-91-6829-01 5 32712584 32712584 C A NPR3 Nonsense_Mutation p.Y234* 0.21 TCGA-91-6829-01 5 33596156 33596156 C T ADAMTS12 Missense_Mutation p.R846H 0.07 tolerated(0.1) benign(0.127) TCGA-91-6829-01 5 35065590 35065590 C G PRLR Silent p.T490T 0.31 TCGA-91-6829-01 5 39341300 39341300 A G C9 Missense_Mutation p.C142R 0.05 deleterious(0) probably_damaging(1) TCGA-91-6829-01 5 41382476 41382476 T C PLCXD3 Silent p.L88L 0.09 TCGA-91-6829-01 5 41927303 41927303 G T FBXO4 Missense_Mutation p.K126N 0.16 tolerated(0.14) benign(0.004) TCGA-91-6829-01 5 54326301 54326301 A T GZMK Silent p.A84A 0.29 TCGA-91-6829-01 5 76029252 76029252 G T F2R Missense_Mutation p.G401V 0.39 deleterious(0.01) probably_damaging(0.969) TCGA-91-6829-01 5 7690890 7690890 G T ADCY2 Silent p.A269A 0.20 TCGA-91-6829-01 5 78612080 78612080 G C JMY Missense_Mutation p.E973Q 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-91-6829-01 5 79031289 79031289 C G CMYA5 Missense_Mutation p.A2234G 0.21 benign(0.099) TCGA-91-6829-01 5 79855521 79855521 C A ANKRD34B Missense_Mutation p.K106N 0.38 tolerated(0.13) benign(0.006) TCGA-91-6829-01 5 9227044 9227044 C G SEMA5A Silent p.V123V 0.04 TCGA-91-6829-01 5 94839593 94839593 G A TTC37 Missense_Mutation p.L1048F 0.29 deleterious(0) possibly_damaging(0.628) TCGA-91-6829-01 6 131571672 131571674 AGA - AKAP7 Intron 0.51 TCGA-91-6829-01 6 132874098 132874098 G T TAAR8 Missense_Mutation p.M89I 0.61 tolerated(0.07) benign(0.291) TCGA-91-6829-01 6 139159550 139159550 T A ECT2L Missense_Mutation p.L81I 0.18 deleterious(0) probably_damaging(0.917) TCGA-91-6829-01 6 142510618 142510618 T C VTA1 Missense_Mutation p.L156S 0.62 deleterious(0) probably_damaging(1) TCGA-91-6829-01 6 143080987 143080987 G A HIVEP2 Silent p.P2146P 0.58 TCGA-91-6829-01 6 150001196 150001196 C G LATS1 Missense_Mutation p.S803T 0.10 tolerated(0.3) benign(0.008) TCGA-91-6829-01 6 153019179 153019179 A G MYCT1 Missense_Mutation p.I48V 0.12 tolerated(0.2) benign(0.055) TCGA-91-6829-01 6 155450561 155450561 T A TIAM2 Missense_Mutation p.F68L 0.57 tolerated_low_confidence(0.69) benign(0.003) TCGA-91-6829-01 6 155728268 155728268 G C NOX3 Missense_Mutation p.P526A 0.40 deleterious(0.04) possibly_damaging(0.872) TCGA-91-6829-01 6 159239267 159239267 C A EZR Intron 0.64 TCGA-91-6829-01 6 165715189 165715189 C T C6orf118 Missense_Mutation p.G208R 0.56 deleterious(0) probably_damaging(0.991) TCGA-91-6829-01 6 167587381 167587381 C A TCP10L2 Silent p.G95G 0.35 TCGA-91-6829-01 6 17283081 17283081 C A RBM24 Missense_Mutation p.P72T 0.32 deleterious(0.01) benign(0.423) TCGA-91-6829-01 6 24145935 24145935 C A NRSN1 Missense_Mutation p.L117M 0.27 tolerated(0.05) probably_damaging(0.988) TCGA-91-6829-01 6 26107887 26107887 C A HIST1H1T Missense_Mutation p.K145N 0.41 deleterious(0) benign(0.161) TCGA-91-6829-01 6 26204885 26204885 G T HIST1H4E Missense_Mutation p.G5C 0.33 deleterious_low_confidence(0) unknown(0) TCGA-91-6829-01 6 26392494 26392494 C G BTN2A2 Intron 0.24 TCGA-91-6829-01 6 27222627 27222627 G C PRSS16 Missense_Mutation p.A436P 0.07 deleterious(0.01) benign(0.139) TCGA-91-6829-01 6 27799066 27799066 C G HIST1H4K Missense_Mutation p.K80N 0.23 deleterious(0.01) benign(0.329) TCGA-91-6829-01 6 28327303 28327303 G A ZKSCAN3 Intron 0.45 TCGA-91-6829-01 6 3137679 3137679 T C BPHL Missense_Mutation p.C206R 0.13 deleterious(0.01) possibly_damaging(0.782) TCGA-91-6829-01 6 3137680 3137680 G T BPHL Missense_Mutation p.C206F 0.12 tolerated(0.08) benign(0.012) TCGA-91-6829-01 6 35773838 35773838 G T LHFPL5 Missense_Mutation p.A131S 0.58 tolerated(0.1) probably_damaging(0.999) TCGA-91-6829-01 6 38790760 38790760 T A DNAH8 Missense_Mutation p.F1007I 0.63 possibly_damaging(0.689) TCGA-91-6829-01 6 38919134 38919134 T A DNAH8 Missense_Mutation p.Y3880N 0.55 probably_damaging(0.998) TCGA-91-6829-01 6 41196631 41196631 C A TREML4 Nonsense_Mutation p.Y81* 0.58 TCGA-91-6829-01 6 42893278 42893278 G A PTCRA Missense_Mutation p.G235E 0.38 tolerated_low_confidence(1) benign(0) TCGA-91-6829-01 6 43014777 43014777 C T CUL7 Silent p.L830L 0.11 TCGA-91-6829-01 6 56480481 56480481 T A DST Intron 0.26 TCGA-91-6829-01 6 70886415 70886415 G A COL19A1 Missense_Mutation p.D876N 0.09 deleterious(0) probably_damaging(1) TCGA-91-6829-01 6 75950955 75950955 C A COX7A2 Silent p.T47T 0.49 TCGA-91-6829-01 6 86238049 86238049 C G SNX14 Missense_Mutation p.K642N 0.47 deleterious(0) probably_damaging(0.994) TCGA-91-6829-01 6 88854965 88854965 T C CNR1 Missense_Mutation p.D10G 0.51 tolerated_low_confidence(0.45) benign(0.003) TCGA-91-6829-01 6 91257081 91257081 C G MAP3K7 Missense_Mutation p.G369A 0.40 tolerated(1) benign(0.066) TCGA-91-6829-01 7 100071909 100071909 C T TSC22D4 Missense_Mutation p.S306N 0.08 tolerated(0.07) benign(0.103) TCGA-91-6829-01 7 100451828 100451828 C A SLC12A9 Missense_Mutation p.S3R 0.30 tolerated(0.05) benign(0.254) TCGA-91-6829-01 7 100552728 100552728 C A MUC3A Silent p.R493R 0.21 TCGA-91-6829-01 7 105111238 105111239 - A PUS7 Frame_Shift_Ins p.T432Ifs*40 0.21 TCGA-91-6829-01 7 106508033 106508033 C A PIK3CG Silent p.P9P 0.19 TCGA-91-6829-01 7 107335136 107335137 TG - SLC26A4 Frame_Shift_Del p.W472Efs*4 0.31 TCGA-91-6829-01 7 108155042 108155042 T A PNPLA8 Silent p.V298V 0.23 TCGA-91-6829-01 7 113518241 113518241 G T PPP1R3A Missense_Mutation p.P969H 0.32 deleterious(0.01) possibly_damaging(0.789) TCGA-91-6829-01 7 11418709 11418709 G A THSD7A Missense_Mutation p.P1597S 0.14 deleterious(0.02) probably_damaging(0.996) TCGA-91-6829-01 7 117876164 117876164 A T ANKRD7 Nonsense_Mutation p.K180* 0.32 TCGA-91-6829-01 7 121624102 121624102 G T PTPRZ1 Nonsense_Mutation p.E287* 0.23 TCGA-91-6829-01 7 122338610 122338610 C A RNF133 Missense_Mutation p.E121D 0.34 tolerated(0.1) benign(0.007) TCGA-91-6829-01 7 127013766 127013766 G A ZNF800 Missense_Mutation p.H542Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-91-6829-01 7 127239488 127239488 C A FSCN3 Silent p.R392R 0.27 TCGA-91-6829-01 7 130008265 130008265 A C CPA5 Missense_Mutation p.I380L 0.31 deleterious(0.02) benign(0.071) TCGA-91-6829-01 7 130008287 130008287 A T CPA5 Missense_Mutation p.D387V 0.37 deleterious(0) probably_damaging(0.985) TCGA-91-6829-01 7 133986824 133986824 G T SLC35B4 Missense_Mutation p.S128Y 0.18 deleterious(0) probably_damaging(0.992) TCGA-91-6829-01 7 134222393 134222393 C A AKR1B10 Missense_Mutation p.H241N 0.38 deleterious(0.01) probably_damaging(0.94) TCGA-91-6829-01 7 141618891 141618891 C T OR9A4 Silent p.V72V 0.08 TCGA-91-6829-01 7 142197762 142197762 T A TRBV11-2 RNA 0.37 TCGA-91-6829-01 7 142239750 142239750 G T TRBV9 Missense_Mutation p.P44T 0.43 deleterious(0) probably_damaging(0.958) TCGA-91-6829-01 7 142723286 142723286 G T OR9A2 3'UTR 0.48 TCGA-91-6829-01 7 143141164 143141164 G A TAS2R60 Missense_Mutation p.A207T 0.37 tolerated(0.57) benign(0.265) TCGA-91-6829-01 7 14378256 14378256 C A DGKB Missense_Mutation p.G670V 0.06 deleterious(0.01) probably_damaging(1) TCGA-91-6829-01 7 143884027 143884027 G A ARHGEF35 Missense_Mutation p.L484F 0.53 unknown(0) TCGA-91-6829-01 7 146471396 146471396 C T CNTNAP2 Missense_Mutation p.P44L 0.15 deleterious(0.04) benign(0.001) TCGA-91-6829-01 7 1474755 1474755 C A MICALL2 Missense_Mutation p.D874Y 0.21 deleterious(0.02) possibly_damaging(0.748) TCGA-91-6829-01 7 14797349 14797349 T A DGKB Silent p.T26T 0.11 TCGA-91-6829-01 7 149152848 149152848 T A ZNF777 Missense_Mutation p.Q89L 0.45 deleterious_low_confidence(0.01) benign(0.068) TCGA-91-6829-01 7 150269316 150269316 G A GIMAP4 Missense_Mutation p.R53Q 0.06 tolerated(0.17) benign(0.009) TCGA-91-6829-01 7 150748263 150748263 C A ASIC3 Silent p.A357A 0.46 TCGA-91-6829-01 7 150771574 150771574 A G SLC4A2 Missense_Mutation p.Q960R 0.10 deleterious(0) probably_damaging(0.996) TCGA-91-6829-01 7 1517560 1517560 A G INTS1 Missense_Mutation p.L1548P 0.05 deleterious(0) probably_damaging(0.999) TCGA-91-6829-01 7 151877045 151877045 T C KMT2C Missense_Mutation p.Y2439C 0.38 probably_damaging(0.999) TCGA-91-6829-01 7 1536898 1536898 C A INTS1 Missense_Mutation p.R493L 0.15 deleterious(0) probably_damaging(0.992) TCGA-91-6829-01 7 15430530 15430530 C G AGMO Missense_Mutation p.G226A 0.36 deleterious(0) probably_damaging(0.979) TCGA-91-6829-01 7 17836494 17836494 C T SNX13 Missense_Mutation p.R861K 0.35 deleterious(0) possibly_damaging(0.873) TCGA-91-6829-01 7 19184470 19184470 C A FERD3L 3'UTR 0.19 TCGA-91-6829-01 7 19761724 19761724 G T TMEM196 Missense_Mutation p.Q165K 0.10 tolerated_low_confidence(0.19) benign(0) TCGA-91-6829-01 7 20421493 20421493 C T ITGB8 Silent p.V315V 0.67 TCGA-91-6829-01 7 20762679 20762679 C G ABCB5 Missense_Mutation p.T821S 0.07 tolerated(0.28) benign(0.008) TCGA-91-6829-01 7 2255624 2255624 C T MAD1L1 Missense_Mutation p.E274K 0.07 deleterious(0) probably_damaging(0.936) TCGA-91-6829-01 7 2303980 2303980 C A SNX8 Silent p.R245R 0.14 TCGA-91-6829-01 7 27203226 27203226 T C HOXA9 Missense_Mutation p.E272G 0.41 deleterious(0) probably_damaging(0.968) TCGA-91-6829-01 7 35288379 35288379 A G TBX20 Missense_Mutation p.I152T 0.47 deleterious(0.01) probably_damaging(0.954) TCGA-91-6829-01 7 44100527 44100527 C T DBNL 3'UTR 0.44 TCGA-91-6829-01 7 44180373 44180373 A T MYL7 Missense_Mutation p.I44N 0.36 deleterious(0) probably_damaging(0.996) TCGA-91-6829-01 7 47882629 47882629 C T PKD1L1 Silent p.L1792L 0.14 TCGA-91-6829-01 7 48319268 48319268 G A ABCA13 Nonsense_Mutation p.W2826* 0.38 TCGA-91-6829-01 7 53104131 53104131 T A POM121L12 Missense_Mutation p.L256Q 0.13 tolerated_low_confidence(0.49) probably_damaging(0.955) TCGA-91-6829-01 7 5632887 5632887 C A FSCN1 Missense_Mutation p.A107E 0.33 tolerated(0.44) benign(0.16) TCGA-91-6829-01 7 5662683 5662683 C G RNF216 Silent p.A860A 0.24 TCGA-91-6829-01 7 5662684 5662684 G C RNF216 Missense_Mutation p.A860G 0.24 tolerated(0.16) benign(0.207) TCGA-91-6829-01 7 5752387 5752387 G A RNF216 Silent p.A647A 0.21 TCGA-91-6829-01 7 57528880 57528880 A T ZNF716 Missense_Mutation p.E238V 0.47 deleterious(0.02) probably_damaging(0.996) TCGA-91-6829-01 7 73008567 73008567 T A MLXIPL Intron 0.33 TCGA-91-6829-01 7 73275552 73275552 A T WBSCR28 Missense_Mutation p.S10C 0.30 deleterious(0) probably_damaging(0.938) TCGA-91-6829-01 7 74004251 74004251 A T GTF2IRD1 Nonsense_Mutation p.K830* 0.11 TCGA-91-6829-01 7 7412926 7412926 G C COL28A1 Missense_Mutation p.L871V 0.04 deleterious(0) probably_damaging(0.962) TCGA-91-6829-01 7 81381537 81381537 T C HGF Missense_Mutation p.N175S 0.35 deleterious(0) probably_damaging(0.996) TCGA-91-6829-01 7 86415918 86415918 C G GRM3 Silent p.R270R 0.18 TCGA-91-6829-01 7 87179246 87179246 C A ABCB1 Missense_Mutation p.R492L 0.30 deleterious(0.01) benign(0.083) TCGA-91-6829-01 7 91691630 91691630 G T AKAP9 Missense_Mutation p.R1936M 0.13 probably_damaging(0.922) TCGA-91-6829-01 7 92244466 92244466 C T CDK6 Silent p.L323L 0.26 TCGA-91-6829-01 7 94039100 94039100 T C COL1A2 Silent p.G334G 0.16 TCGA-91-6829-01 7 97862145 97862145 C G TECPR1 Silent p.V604V 0.39 TCGA-91-6829-01 7 98985702 98985702 C A ARPC1B Nonsense_Mutation p.C70* 0.21 TCGA-91-6829-01 7 99757918 99757918 A T GAL3ST4 Missense_Mutation p.L365Q 0.07 deleterious(0) probably_damaging(1) TCGA-91-6829-01 8 101721762 101721762 T A PABPC1 Silent p.R390R 0.13 TCGA-91-6829-01 8 102381147 102381147 G A NACAP1 RNA 0.33 TCGA-91-6829-01 8 10387130 10387130 G T PRSS55 Nonsense_Mutation p.E90* 0.31 TCGA-91-6829-01 8 10396253 10396253 C G PRSS55 Missense_Mutation p.L337V 0.06 deleterious(0.04) benign(0.272) TCGA-91-6829-01 8 10396254 10396254 T C PRSS55 Missense_Mutation p.L337P 0.06 deleterious(0) probably_damaging(0.921) TCGA-91-6829-01 8 10466457 10466457 G A RP1L1 Silent p.P1717P 0.23 TCGA-91-6829-01 8 105503299 105503299 T C LRP12 Missense_Mutation p.S728G 0.07 deleterious(0.04) benign(0.123) TCGA-91-6829-01 8 108334269 108334269 G C ANGPT1 Silent p.G221G 0.06 TCGA-91-6829-01 8 110255340 110255340 T C NUDCD1 Silent p.L550L 0.23 TCGA-91-6829-01 8 118147547 118147547 C G SLC30A8 5'Flank 0.38 TCGA-91-6829-01 8 121483118 121483118 A C MTBP Missense_Mutation p.N369T 0.07 tolerated(0.18) benign(0.001) TCGA-91-6829-01 8 124413331 124413331 C T ATAD2 5'Flank 0.23 TCGA-91-6829-01 8 124664095 124664095 G C KLHL38 Missense_Mutation p.L358V 0.38 tolerated(0.28) benign(0.011) TCGA-91-6829-01 8 133036911 133036911 C A OC90 Silent p.G417G 0.47 TCGA-91-6829-01 8 133036912 133036912 C A OC90 Missense_Mutation p.G417V 0.47 tolerated(0.06) benign(0.117) TCGA-91-6829-01 8 139209824 139209824 C T FAM135B Missense_Mutation p.R253Q 0.20 tolerated(0.31) benign(0.006) TCGA-91-6829-01 8 141370270 141370270 C A TRAPPC9 Silent p.A556A 0.26 TCGA-91-6829-01 8 145619449 145619449 C G CPSF1 Missense_Mutation p.V1271L 0.16 deleterious(0.03) benign(0.405) TCGA-91-6829-01 8 145650186 145650186 G T VPS28 Missense_Mutation p.A106D 0.16 deleterious(0) probably_damaging(0.988) TCGA-91-6829-01 8 17188770 17188770 C G MTMR7 Missense_Mutation p.A252P 0.23 deleterious(0) probably_damaging(0.996) TCGA-91-6829-01 8 2007299 2007299 C A MYOM2 Missense_Mutation p.Q196K 0.33 tolerated(0.59) benign(0.217) TCGA-91-6829-01 8 20110354 20110354 A T LZTS1 Missense_Mutation p.L363H 0.23 deleterious(0) probably_damaging(0.981) TCGA-91-6829-01 8 2054306 2054306 G A MYOM2 Missense_Mutation p.D973N 0.13 tolerated(0.07) possibly_damaging(0.839) TCGA-91-6829-01 8 21766921 21766921 G T DOK2 Silent p.G380G 0.22 TCGA-91-6829-01 8 22005941 22005941 T A LGI3 Missense_Mutation p.Q460L 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-91-6829-01 8 24813237 24813237 A T CTD-2168K21.2 5'Flank 0.11 TCGA-91-6829-01 8 25101272 25101272 G A DOCK5 Silent p.E42E 0.22 TCGA-91-6829-01 8 25101273 25101273 G T DOCK5 Missense_Mutation p.G43C 0.17 deleterious(0) probably_damaging(0.926) TCGA-91-6829-01 8 25209284 25209284 G T DOCK5 Missense_Mutation p.R931L 0.19 tolerated(0.1) possibly_damaging(0.458) TCGA-91-6829-01 8 26238284 26238284 C G BNIP3L 5'Flank 0.32 TCGA-91-6829-01 8 27898609 27898609 C T NUGGC Missense_Mutation p.A524T 0.25 deleterious(0) probably_damaging(1) TCGA-91-6829-01 8 28304710 28304710 C A FBXO16 Missense_Mutation p.R274M 0.16 deleterious(0) possibly_damaging(0.75) TCGA-91-6829-01 8 3046423 3046423 C T CSMD1 Missense_Mutation p.G1837S 0.44 probably_damaging(1) TCGA-91-6829-01 8 38095615 38095615 G C DDHD2 Silent p.V170V 0.19 TCGA-91-6829-01 8 41563755 41563755 C A ANK1 Missense_Mutation p.G701V 0.42 deleterious(0) probably_damaging(0.982) TCGA-91-6829-01 8 49831348 49831348 A G SNAI2 3'UTR 0.32 TCGA-91-6829-01 8 55533900 55533900 G T RP1 Missense_Mutation p.R125L 0.18 tolerated(0.37) benign(0.024) TCGA-91-6829-01 8 57353894 57353894 G T PENK Silent p.G247G 0.16 TCGA-91-6829-01 8 61653994 61653994 G T CHD7 Translation_Start_Site p.M1? 0.16 benign(0.019) TCGA-91-6829-01 8 62212449 62212449 C A CLVS1 Silent p.A21A 0.17 TCGA-91-6829-01 8 68018196 68018196 C G CSPP1 Missense_Mutation p.A369G 0.26 tolerated(0.07) benign(0.381) TCGA-91-6829-01 8 71646054 71646054 T A XKR9 Missense_Mutation p.C173S 0.18 tolerated(0.06) benign(0.035) TCGA-91-6829-01 8 72756411 72756411 C T MSC Translation_Start_Site p.M1? 0.18 deleterious(0) probably_damaging(0.968) TCGA-91-6829-01 8 77766681 77766681 G T ZFHX4 Missense_Mutation p.W2508C 0.14 probably_damaging(0.993) TCGA-91-6829-01 8 85799963 85799963 G T RALYL Missense_Mutation p.M283I 0.10 tolerated(0.17) benign(0.341) TCGA-91-6829-01 9 104335671 104335671 C T GRIN3A Missense_Mutation p.D1045N 0.05 tolerated(0.23) benign(0.002) TCGA-91-6829-01 9 104499662 104499662 G T GRIN3A Silent p.P200P 0.43 TCGA-91-6829-01 9 113265405 113265405 A T SVEP1 Missense_Mutation p.C466S 0.40 probably_damaging(1) TCGA-91-6829-01 9 118950340 118950340 C A PAPPA Silent p.R441R 0.40 TCGA-91-6829-01 9 119858333 119858333 G T ASTN2 Silent p.R371R 0.36 TCGA-91-6829-01 9 120053691 120053691 G T ASTN2 Missense_Mutation p.Q182K 0.55 tolerated_low_confidence(1) benign(0.092) TCGA-91-6829-01 9 120475277 120475277 G C TLR4 Missense_Mutation p.A291P 0.39 tolerated(0.1) probably_damaging(0.937) TCGA-91-6829-01 9 125424827 125424827 C - OR1L1 Frame_Shift_Del p.V279Yfs*2 0.31 TCGA-91-6829-01 9 131038432 131038432 G T SWI5 Missense_Mutation p.R3L 0.31 deleterious_low_confidence(0) benign(0.25) TCGA-91-6829-01 9 135690074 135690074 C A AK8 Missense_Mutation p.R310S 0.43 tolerated(0.23) benign(0.021) TCGA-91-6829-01 9 135704074 135704074 C A AK8 Missense_Mutation p.A148S 0.38 deleterious(0.02) benign(0.049) TCGA-91-6829-01 9 135704075 135704075 C A AK8 Missense_Mutation p.Q147H 0.35 deleterious(0) possibly_damaging(0.863) TCGA-91-6829-01 9 140139769 140139769 C T FAM166A Missense_Mutation p.R171K 0.45 tolerated(0.95) benign(0.055) TCGA-91-6829-01 9 14776091 14776091 G T FREM1 Missense_Mutation p.A1518D 0.12 tolerated(0.61) benign(0.002) TCGA-91-6829-01 9 18906824 18906824 C - ADAMTSL1 Frame_Shift_Del p.N1700Tfs*41 0.37 TCGA-91-6829-01 9 26928119 26928119 T C PLAA Missense_Mutation p.R182G 0.13 deleterious(0.01) possibly_damaging(0.665) TCGA-91-6829-01 9 35310542 35310542 T C UNC13B Silent p.Y280Y 0.08 TCGA-91-6829-01 9 39086814 39086814 G A CNTNAP3 Missense_Mutation p.H1085Y 0.33 tolerated(0.21) benign(0.029) TCGA-91-6829-01 9 40774115 40774115 C G ZNF658 Missense_Mutation p.G387A 0.37 deleterious(0.02) benign(0.138) TCGA-91-6829-01 9 5570146 5570146 C A PDCD1LG2 3'UTR 0.20 TCGA-91-6829-01 9 79328486 79328486 C A PRUNE2 Missense_Mutation p.C303F 0.16 deleterious(0.03) probably_damaging(0.983) TCGA-91-6829-01 9 82340023 82340023 G T TLE4 Silent p.G762G 0.20 TCGA-91-6829-01 9 87285692 87285692 C A NTRK2 Missense_Mutation p.P10H 0.45 tolerated_low_confidence(0.3) probably_damaging(0.993) TCGA-91-6829-01 9 95142109 95142109 G C CENPP Missense_Mutation p.E178Q 0.37 deleterious(0) possibly_damaging(0.728) TCGA-91-6829-01 X 10181855 10181855 A G CLCN4 Missense_Mutation p.I571V 0.60 deleterious(0.03) benign(0.35) TCGA-91-6829-01 X 102334690 102334690 C T NXF3 Splice_Site p.X387_splice 0.40 TCGA-91-6829-01 X 102962361 102962361 G T GLRA4 Missense_Mutation p.P389T 0.23 tolerated_low_confidence(0.37) benign(0.001) TCGA-91-6829-01 X 107225239 107225239 G A TEX13B Missense_Mutation p.S40F 0.40 deleterious(0) probably_damaging(0.985) TCGA-91-6829-01 X 107430488 107430488 G T COL4A6 Missense_Mutation p.P598T 0.51 probably_damaging(0.936) TCGA-91-6829-01 X 117959580 117959580 G T ZCCHC12 Nonsense_Mutation p.E125* 0.54 TCGA-91-6829-01 X 118723347 118723347 G T NKRF Missense_Mutation p.H696N 0.07 tolerated(0.33) possibly_damaging(0.653) TCGA-91-6829-01 X 123195708 123195708 G A STAG2 Missense_Mutation p.R541K 0.38 deleterious(0) possibly_damaging(0.652) TCGA-91-6829-01 X 130219647 130219647 G C ARHGAP36 Silent p.L347L 0.52 TCGA-91-6829-01 X 141290686 141290686 C A MAGEC2 Missense_Mutation p.S363I 0.39 tolerated(0.22) unknown(0) TCGA-91-6829-01 X 147919203 147919203 T A AFF2 Silent p.T373T 0.31 TCGA-91-6829-01 X 149963906 149963906 G C CD99L2 Missense_Mutation p.P111A 0.34 tolerated(0.07) probably_damaging(0.998) TCGA-91-6829-01 X 150345292 150345292 C A GPR50 Nonsense_Mutation p.C33* 0.31 TCGA-91-6829-01 X 150349269 150349269 A T GPR50 Missense_Mutation p.K405M 0.36 deleterious_low_confidence(0) probably_damaging(0.936) TCGA-91-6829-01 X 150891246 150891246 C T FATE1 3'UTR 0.28 TCGA-91-6829-01 X 151283559 151283559 C A RP11-1007I13.4 RNA 0.29 TCGA-91-6829-01 X 151336626 151336626 G T GABRA3 3'UTR 0.27 TCGA-91-6829-01 X 151336627 151336627 G T GABRA3 3'UTR 0.27 TCGA-91-6829-01 X 151560719 151560719 C A GABRA3 Intron 0.33 TCGA-91-6829-01 X 151900674 151900674 A C MAGEA12 Missense_Mutation p.S43A 0.16 deleterious(0.04) possibly_damaging(0.717) TCGA-91-6829-01 X 153171805 153171805 T G AVPR2 Missense_Mutation p.L282R 0.37 deleterious(0) probably_damaging(0.912) TCGA-91-6829-01 X 21609267 21609267 G T CNKSR2 Missense_Mutation p.W595C 0.47 deleterious(0) probably_damaging(1) TCGA-91-6829-01 X 27999166 27999166 C A DCAF8L1 Nonsense_Mutation p.E96* 0.54 TCGA-91-6829-01 X 30747008 30747008 G T GK 3'UTR 0.40 TCGA-91-6829-01 X 32632526 32632526 T A DMD Missense_Mutation p.E459V 0.23 possibly_damaging(0.888) TCGA-91-6829-01 X 37526534 37526534 G T LANCL3 Splice_Site p.X299_splice 0.56 TCGA-91-6829-01 X 37526535 37526535 G T LANCL3 Missense_Mutation p.G299V 0.56 deleterious(0) probably_damaging(0.989) TCGA-91-6829-01 X 47918444 47918444 C A ZNF630 Missense_Mutation p.D463Y 0.50 deleterious(0) possibly_damaging(0.801) TCGA-91-6829-01 X 48339578 48339578 A C FTSJ1 Missense_Mutation p.Q134P 0.52 deleterious(0) probably_damaging(0.98) TCGA-91-6829-01 X 70145656 70145656 G T SLC7A3 3'UTR 0.69 TCGA-91-6829-01 X 77286895 77286895 C T ATP7A Intron 0.49 TCGA-91-6829-01 X 78426763 78426763 G - GPR174 Frame_Shift_Del p.P88Lfs*10 0.43 TCGA-91-6829-01 X 91873528 91873528 A G PCDH11X Silent p.P1211P 0.14 TCGA-91-6829-01 X 91873985 91873985 A - PCDH11X 3'UTR 0.43 TCGA-91-6829-01 X 92926929 92926929 C T NAP1L3 Missense_Mutation p.D459N 0.36 deleterious(0.03) probably_damaging(0.945) TCGA-91-6829-01 X 96200587 96200587 G C DIAPH2 Missense_Mutation p.K502N 0.50 deleterious(0.01) unknown(0) TCGA-91-6830-01 10 135113087 135113087 C T TUBGCP2 Silent p.Q100Q 0.10 TCGA-91-6830-01 10 135341025 135341025 C G CYP2E1 Missense_Mutation p.I42M 0.14 deleterious(0) possibly_damaging(0.52) TCGA-91-6830-01 10 16930444 16930444 G A CUBN Silent p.L2959L 0.08 TCGA-91-6830-01 10 37454039 37454039 G A ANKRD30A Missense_Mutation p.E618K 0.18 tolerated(0.44) possibly_damaging(0.636) TCGA-91-6830-01 10 50859999 50859999 G A CHAT Silent p.Q527Q 0.11 TCGA-91-6830-01 10 7218015 7218015 T G SFMBT2 Missense_Mutation p.S641R 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-91-6830-01 10 75533400 75533400 C T FUT11 Silent p.F387F 0.08 TCGA-91-6830-01 10 90583087 90583087 G A ANKRD22 Missense_Mutation p.L150F 0.09 tolerated(0.19) possibly_damaging(0.846) TCGA-91-6830-01 10 91222269 91222269 C T SLC16A12 Missense_Mutation p.G23R 0.18 tolerated_low_confidence(0.08) benign(0.022) TCGA-91-6830-01 11 110035186 110035186 C G ZC3H12C Missense_Mutation p.A459G 0.19 tolerated(0.26) benign(0.007) TCGA-91-6830-01 11 116692408 116692408 C T APOA4 Silent p.Q122Q 0.21 TCGA-91-6830-01 11 129744182 129744182 G C NFRKB Missense_Mutation p.P727R 0.05 deleterious(0.04) unknown(0) TCGA-91-6830-01 11 1628979 1628979 A T KRTAP5-3 Missense_Mutation p.C213S 0.14 deleterious(0.04) unknown(0) TCGA-91-6830-01 11 36458958 36458958 G C PRR5L Missense_Mutation p.A126P 0.12 deleterious(0.02) benign(0.068) TCGA-91-6830-01 11 46898190 46898190 T A LRP4 Splice_Site p.X1122_splice 0.13 TCGA-91-6830-01 11 6245630 6245630 G C FAM160A2 Silent p.V39V 0.08 TCGA-91-6830-01 11 64088497 64088497 G C PRDX5 Missense_Mutation p.D166H 0.05 deleterious(0) probably_damaging(0.953) TCGA-91-6830-01 11 65486303 65486303 G C RNASEH2C 3'UTR 0.08 TCGA-91-6830-01 11 71733399 71733399 C G NUMA1 Missense_Mutation p.E120Q 0.05 possibly_damaging(0.743) TCGA-91-6830-01 11 77051807 77051807 A C PAK1 Missense_Mutation p.Y334D 0.10 deleterious(0) probably_damaging(1) TCGA-91-6830-01 11 78369787 78369787 G A TENM4 Silent p.L2542L 0.15 TCGA-91-6830-01 11 89392759 89392759 T C FOLH1B RNA 0.17 TCGA-91-6830-01 12 10206897 10206897 C T CLEC9A Missense_Mutation p.S40L 0.16 tolerated(0.22) benign(0.01) TCGA-91-6830-01 12 104147067 104147067 G C STAB2 Missense_Mutation p.R2217T 0.07 deleterious(0.01) benign(0.243) TCGA-91-6830-01 12 108985885 108985885 C A TMEM119 Missense_Mutation p.R92L 0.06 tolerated(0.08) possibly_damaging(0.693) TCGA-91-6830-01 12 110232235 110232235 G A TRPV4 Missense_Mutation p.R464C 0.14 deleterious(0.02) possibly_damaging(0.556) TCGA-91-6830-01 12 119773051 119773051 G A CCDC60 Missense_Mutation p.A24T 0.11 tolerated(0.32) benign(0.04) TCGA-91-6830-01 12 122958565 122958565 C T ZCCHC8 Missense_Mutation p.E535K 0.08 deleterious(0.01) probably_damaging(0.994) TCGA-91-6830-01 12 126138327 126138327 C A TMEM132B Missense_Mutation p.Q770K 0.16 deleterious(0.01) probably_damaging(0.958) TCGA-91-6830-01 12 21621575 21621575 G T PYROXD1 Nonsense_Mutation p.E464* 0.10 TCGA-91-6830-01 12 32760963 32760963 G C FGD4 Missense_Mutation p.E356Q 0.10 deleterious(0) probably_damaging(0.928) TCGA-91-6830-01 12 49582774 49582774 C T TUBA1A 5'UTR 0.12 TCGA-91-6830-01 12 50794711 50794711 C T LARP4 5'UTR 0.04 TCGA-91-6830-01 12 51585530 51585530 G A POU6F1 Silent p.L137L 0.10 TCGA-91-6830-01 12 52449825 52449825 G A NR4A1 Silent p.Q309Q 0.11 TCGA-91-6830-01 12 52470568 52470568 A G C12orf44 Splice_Site p.X85_splice 0.09 TCGA-91-6830-01 12 54765456 54765456 C T ZNF385A Silent p.E155E 0.11 TCGA-91-6830-01 12 5603633 5603633 G A NTF3 Missense_Mutation p.V98M 0.21 tolerated(0.17) benign(0.001) TCGA-91-6830-01 12 71978235 71978235 C G LGR5 Silent p.L815L 0.09 TCGA-91-6830-01 12 78570980 78570980 A G NAV3 Silent p.S1728S 0.07 TCGA-91-6830-01 12 80658986 80658986 C G OTOGL Missense_Mutation p.F731L 0.17 tolerated(0.63) benign(0.236) TCGA-91-6830-01 12 95927967 95927967 G C USP44 Silent p.L22L 0.06 TCGA-91-6830-01 13 102235704 102235704 C A ITGBL1 Nonsense_Mutation p.S289* 0.10 TCGA-91-6830-01 13 113826116 113826116 C T PROZ Silent p.L322L 0.19 TCGA-91-6830-01 13 25264599 25264599 C T ATP12A Nonsense_Mutation p.Q224* 0.20 TCGA-91-6830-01 14 100363537 100363537 G C EML1 Missense_Mutation p.E264Q 0.13 deleterious(0) probably_damaging(0.976) TCGA-91-6830-01 14 101492438 101492438 C G MIR758 RNA 0.04 TCGA-91-6830-01 14 102482742 102482742 G A DYNC1H1 Missense_Mutation p.M2510I 0.09 benign(0) TCGA-91-6830-01 14 20502451 20502451 G A OR4K13 Missense_Mutation p.S156L 0.11 deleterious(0.01) possibly_damaging(0.507) TCGA-91-6830-01 14 23847574 23847574 T A CMTM5 Missense_Mutation p.I48N 0.20 deleterious(0) probably_damaging(0.929) TCGA-91-6830-01 14 31602531 31602531 G A HECTD1 Missense_Mutation p.R1279C 0.10 deleterious(0) probably_damaging(1) TCGA-91-6830-01 14 32562015 32562015 C T ARHGAP5 Missense_Mutation p.L714F 0.24 deleterious(0) probably_damaging(0.999) TCGA-91-6830-01 14 42356638 42356638 T A LRFN5 Silent p.T270T 0.19 TCGA-91-6830-01 14 50085644 50085644 G C RPL36AL Missense_Mutation p.A60G 0.12 deleterious(0.02) benign(0.093) TCGA-91-6830-01 14 54996869 54996870 - T CGRRF1 Frame_Shift_Ins p.C117Lfs*16 0.12 TCGA-91-6830-01 14 95598909 95598909 G C DICER1 Missense_Mutation p.Q84E 0.04 tolerated(0.5) benign(0.009) TCGA-91-6830-01 14 96848643 96848643 C T GSKIP Missense_Mutation p.S20L 0.09 tolerated_low_confidence(0.11) benign(0.024) TCGA-91-6830-01 15 101592125 101592125 G A LRRK1 Missense_Mutation p.E1217K 0.16 deleterious(0.04) probably_damaging(0.995) TCGA-91-6830-01 15 22873224 22873224 C G TUBGCP5 Silent p.L1017L 0.07 TCGA-91-6830-01 15 24923064 24923064 A T NPAP1 Missense_Mutation p.S684C 0.18 tolerated(0.06) benign(0.283) TCGA-91-6830-01 15 37329042 37329042 C T MEIS2 Missense_Mutation p.M291I 0.19 deleterious(0.01) possibly_damaging(0.573) TCGA-91-6830-01 15 43658395 43658395 G C ZSCAN29 Missense_Mutation p.Q379E 0.05 tolerated(1) benign(0) TCGA-91-6830-01 15 50168628 50168628 G A ATP8B4 Silent p.C958C 0.29 TCGA-91-6830-01 15 65421447 65421447 T A PDCD7 Missense_Mutation p.D311V 0.14 deleterious(0) probably_damaging(0.999) TCGA-91-6830-01 15 65622640 65622640 C T IGDCC3 Missense_Mutation p.E617K 0.13 tolerated(0.28) benign(0.004) TCGA-91-6830-01 15 65622990 65622990 C T IGDCC3 Missense_Mutation p.E551K 0.17 tolerated(0.11) benign(0.4) TCGA-91-6830-01 15 65968944 65968944 G C DENND4A Missense_Mutation p.S1402C 0.15 tolerated(0.18) possibly_damaging(0.67) TCGA-91-6830-01 15 75762273 75762273 G A PTPN9 Missense_Mutation p.S476L 0.11 deleterious(0.03) benign(0.028) TCGA-91-6830-01 15 84539583 84539583 A T ADAMTSL3 Nonsense_Mutation p.K278* 0.11 TCGA-91-6830-01 15 85326841 85326841 C G ZNF592 Nonsense_Mutation p.S312* 0.05 TCGA-91-6830-01 15 85327584 85327584 C T ZNF592 Missense_Mutation p.H560Y 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-91-6830-01 15 86122892 86122892 C T AKAP13 Silent p.I531I 0.08 TCGA-91-6830-01 15 89698596 89698596 A T ABHD2 Splice_Site p.X124_splice 0.17 TCGA-91-6830-01 16 11855295 11855295 G A ZC3H7A Silent p.L762L 0.09 TCGA-91-6830-01 16 1756520 1756520 G A MAPK8IP3 Silent p.V60V 0.21 TCGA-91-6830-01 16 19501762 19501762 C G TMC5 Silent p.L873L 0.08 TCGA-91-6830-01 16 22269882 22269882 C G EEF2K Missense_Mutation p.S366C 0.05 deleterious(0) probably_damaging(0.987) TCGA-91-6830-01 16 23498078 23498078 C A GGA2 Nonsense_Mutation p.E205* 0.13 TCGA-91-6830-01 16 24922893 24922893 C T SLC5A11 3'UTR 0.15 TCGA-91-6830-01 16 30005950 30005950 C A HIRIP3 Missense_Mutation p.R172S 0.10 deleterious(0.01) benign(0.057) TCGA-91-6830-01 16 30518166 30518166 G C ITGAL Missense_Mutation p.E833Q 0.04 tolerated(0.28) benign(0.04) TCGA-91-6830-01 16 30771729 30771729 C T C16orf93 Silent p.L115L 0.10 TCGA-91-6830-01 16 31090472 31090472 C T ZNF646 Nonsense_Mutation p.Q943* 0.14 TCGA-91-6830-01 16 3781236 3781236 C G CREBBP Missense_Mutation p.C1710S 0.10 unknown(0) TCGA-91-6830-01 16 50345660 50345660 T C ADCY7 Missense_Mutation p.V804A 0.15 tolerated(0.26) benign(0.005) TCGA-91-6830-01 16 53730115 53730115 C T RPGRIP1L Missense_Mutation p.E60K 0.04 deleterious(0) probably_damaging(0.994) TCGA-91-6830-01 16 56974053 56974053 G C HERPUD1 Missense_Mutation p.W267C 0.04 deleterious(0) probably_damaging(1) TCGA-91-6830-01 16 69368499 69368499 G C RP11-343C2.12 Missense_Mutation p.F92L 0.08 tolerated(0.3) probably_damaging(0.944) TCGA-91-6830-01 16 70064920 70064920 C G MIR1972-2 3'Flank 0.19 TCGA-91-6830-01 16 71668599 71668599 G C MARVELD3 Intron 0.14 TCGA-91-6830-01 16 74695173 74695173 C T RFWD3 Missense_Mutation p.E59K 0.10 deleterious_low_confidence(0.01) benign(0.118) TCGA-91-6830-01 16 81390414 81390414 G T GAN Missense_Mutation p.A220S 0.12 tolerated(0.35) benign(0.01) TCGA-91-6830-01 16 85690992 85690992 C T GSE1 Silent p.I474I 0.08 TCGA-91-6830-01 17 1371352 1371352 G A MYO1C Silent p.L942L 0.10 TCGA-91-6830-01 17 18138158 18138158 A G LLGL1 Missense_Mutation p.H304R 0.15 tolerated(0.1) benign(0.021) TCGA-91-6830-01 17 18150355 18150355 C T FLII Silent p.L896L 0.09 TCGA-91-6830-01 17 18154698 18154698 C T FLII Missense_Mutation p.E493K 0.07 tolerated(0.08) possibly_damaging(0.479) TCGA-91-6830-01 17 26107873 26107873 G T NOS2 Silent p.V308V 0.10 TCGA-91-6830-01 17 28511724 28511724 G A NSRP1 Missense_Mutation p.D237N 0.10 tolerated(0.5) benign(0.001) TCGA-91-6830-01 17 3365780 3365780 C G SPATA22 Missense_Mutation p.W109S 0.14 deleterious(0.03) possibly_damaging(0.853) TCGA-91-6830-01 17 37357505 37357505 C T RPL19 Silent p.L15L 0.08 TCGA-91-6830-01 17 38935988 38935988 C G KRT27 Missense_Mutation p.Q270H 0.30 deleterious(0.01) possibly_damaging(0.857) TCGA-91-6830-01 17 40021372 40021372 C T KLHL11 Silent p.Q84Q 0.27 TCGA-91-6830-01 17 4047098 4047098 G A CYB5D2 Missense_Mutation p.A17T 0.10 tolerated(0.11) unknown(0) TCGA-91-6830-01 17 5392495 5392495 A G MIS12 Missense_Mutation p.K105E 0.16 tolerated(0.06) benign(0.008) TCGA-91-6830-01 17 62492601 62492601 C T POLG2 Silent p.L162L 0.07 TCGA-91-6830-01 17 7094030 7094030 G C DLG4 Silent p.L767L 0.09 TCGA-91-6830-01 17 7306703 7306703 C G TMEM256 Missense_Mutation p.D42H 0.06 deleterious(0.01) possibly_damaging(0.499) TCGA-91-6830-01 17 7365284 7365284 C G ZBTB4 Missense_Mutation p.R1006T 0.08 benign(0.346) TCGA-91-6830-01 17 76203125 76203125 G T AFMID 3'UTR 0.38 TCGA-91-6830-01 17 79968734 79968734 C A ASPSCR1 Silent p.P409P 0.09 TCGA-91-6830-01 17 8140690 8140690 C T CTC1 Intron 0.09 TCGA-91-6830-01 18 28935210 28935210 T C DSG1 Silent p.S1017S 0.18 TCGA-91-6830-01 19 10395858 10395858 C T ICAM1 Silent p.L498L 0.10 TCGA-91-6830-01 19 16643406 16643406 C T CHERP Intron 0.19 TCGA-91-6830-01 19 17337105 17337105 G A OCEL1 Missense_Mutation p.E17K 0.11 deleterious_low_confidence(0.01) benign(0.394) TCGA-91-6830-01 19 17516356 17516356 C G BST2 Missense_Mutation p.R10T 0.09 tolerated(0.15) benign(0.15) TCGA-91-6830-01 19 18499152 18499152 G A GDF15 Missense_Mutation p.E112K 0.08 tolerated(0.64) benign(0.012) TCGA-91-6830-01 19 19453632 19453632 G C MAU2 Missense_Mutation p.Q310H 0.03 tolerated(0.13) benign(0.092) TCGA-91-6830-01 19 24102747 24102747 G A ZNF726 Intron 0.17 TCGA-91-6830-01 19 34955028 34955028 C G UBA2 Missense_Mutation p.I532M 0.09 deleterious(0) benign(0.312) TCGA-91-6830-01 19 36494303 36494303 T A SYNE4 Missense_Mutation p.H384L 0.24 tolerated(0.15) benign(0.007) TCGA-91-6830-01 19 38692597 38692597 G C SIPA1L3 Missense_Mutation p.E1694Q 0.10 tolerated(0.53) possibly_damaging(0.511) TCGA-91-6830-01 19 41597723 41597723 C T CYP2A13 Silent p.F247F 0.20 TCGA-91-6830-01 19 44469137 44469137 C G ZNF221 Missense_Mutation p.F39L 0.04 deleterious(0) probably_damaging(0.999) TCGA-91-6830-01 19 47422373 47422373 G A ARHGAP35 Silent p.Q147Q 0.16 TCGA-91-6830-01 19 50149374 50149374 G A SCAF1 Missense_Mutation p.R59Q 0.18 unknown(0) TCGA-91-6830-01 19 52090721 52090721 C T ZNF175 Silent p.F379F 0.13 TCGA-91-6830-01 19 53384850 53384850 C G ZNF320 Missense_Mutation p.E177Q 0.11 tolerated(0.21) benign(0.016) TCGA-91-6830-01 19 54445569 54445569 C A CACNG7 3'UTR 0.24 TCGA-91-6830-01 19 55147151 55147151 C G LILRB1 Intron 0.06 TCGA-91-6830-01 19 7132214 7132214 T A INSR Missense_Mutation p.N933Y 0.14 tolerated(0.05) probably_damaging(1) TCGA-91-6830-01 1 109439567 109439567 C G GPSM2 Missense_Mutation p.F46L 0.07 deleterious(0.02) benign(0.166) TCGA-91-6830-01 1 144917614 144917614 G C PDE4DIP Missense_Mutation p.S497C 0.05 tolerated(0.86) benign(0.012) TCGA-91-6830-01 1 146397454 146397454 G T NBPF12 Nonsense_Mutation p.E91* 0.09 TCGA-91-6830-01 1 152080046 152080046 C T TCHH Missense_Mutation p.E1883K 0.10 benign(0.403) TCGA-91-6830-01 1 152975629 152975629 G T SPRR3 Missense_Mutation p.V45F 0.17 tolerated(0.05) probably_damaging(0.934) TCGA-91-6830-01 1 158590152 158590152 C T SPTA1 Silent p.L2075L 0.16 TCGA-91-6830-01 1 158590153 158590153 A T SPTA1 Missense_Mutation p.L2075Q 0.16 deleterious(0) probably_damaging(1) TCGA-91-6830-01 1 158632572 158632572 A T SPTA1 Missense_Mutation p.L795Q 0.13 deleterious(0.03) probably_damaging(0.984) TCGA-91-6830-01 1 160147400 160147400 C G ATP1A4 Silent p.L894L 0.04 TCGA-91-6830-01 1 161011920 161011920 G C USF1 Missense_Mutation p.Q88E 0.14 tolerated(0.06) benign(0.042) TCGA-91-6830-01 1 176759087 176759087 C T PAPPA2 Missense_Mutation p.L1620F 0.10 deleterious(0) possibly_damaging(0.807) TCGA-91-6830-01 1 182823168 182823168 C T DHX9 Silent p.L161L 0.12 TCGA-91-6830-01 1 197070190 197070190 C T ASPM Missense_Mutation p.E2731K 0.09 tolerated(0.06) benign(0.056) TCGA-91-6830-01 1 201924633 201924633 C A TIMM17A 5'UTR 0.13 TCGA-91-6830-01 1 216595579 216595579 G C USH2A Missense_Mutation p.R34G 0.08 benign(0.001) TCGA-91-6830-01 1 24663233 24663233 C T GRHL3 Silent p.L176L 0.14 TCGA-91-6830-01 1 24663238 24663238 C T GRHL3 Missense_Mutation p.S178F 0.13 tolerated(0.27) possibly_damaging(0.877) TCGA-91-6830-01 1 247319925 247319925 A G ZNF124 Silent p.L271L 0.06 TCGA-91-6830-01 1 248402784 248402784 T A OR2M4 Nonsense_Mutation p.L185* 0.14 TCGA-91-6830-01 1 32092522 32092523 - C HCRTR1 Frame_Shift_Ins p.I408Hfs*6 0.10 TCGA-91-6830-01 1 33149420 33149420 G C RBBP4 3'UTR 0.20 TCGA-91-6830-01 1 33245125 33245125 C G YARS Splice_Site p.X445_splice 0.07 TCGA-91-6830-01 1 37307505 37307505 C T GRIK3 Silent p.R454R 0.07 TCGA-91-6830-01 1 44424492 44424492 C G IPO13 Missense_Mutation p.I653M 0.08 deleterious(0.02) benign(0.028) TCGA-91-6830-01 1 46744499 46744499 G A LRRC41 3'UTR 0.14 TCGA-91-6830-01 1 46763294 46763294 G C LRRC41 Missense_Mutation p.Q100E 0.11 tolerated(0.18) benign(0.047) TCGA-91-6830-01 1 6641229 6641229 C T ZBTB48 Missense_Mutation p.S187F 0.10 tolerated(0.4) benign(0.004) TCGA-91-6830-01 1 75055630 75055630 G C C1orf173 Missense_Mutation p.Q621E 0.08 tolerated(0.15) possibly_damaging(0.716) TCGA-91-6830-01 1 99470156 99470156 C T LPPR5 Silent p.V24V 0.17 TCGA-91-6830-01 20 33872280 33872280 C G EIF6 Missense_Mutation p.R4P 0.12 deleterious(0) probably_damaging(0.998) TCGA-91-6830-01 20 34059877 34059877 G C CEP250 Missense_Mutation p.E317D 0.04 probably_damaging(0.937) TCGA-91-6830-01 20 37202893 37202893 A C RALGAPB Missense_Mutation p.M1415L 0.05 tolerated(0.91) benign(0.033) TCGA-91-6830-01 20 44536380 44536380 G C PLTP Silent p.L188L 0.13 TCGA-91-6830-01 20 45130568 45130568 G C ZNF334 Missense_Mutation p.F470L 0.05 deleterious(0.02) probably_damaging(0.993) TCGA-91-6830-01 20 47734482 47734482 G C STAU1 Silent p.A447A 0.04 TCGA-91-6830-01 20 50273536 50273536 C T ATP9A Missense_Mutation p.E483K 0.11 tolerated(0.13) benign(0.035) TCGA-91-6830-01 21 34923966 34923966 C G SON Missense_Mutation p.S810C 0.04 possibly_damaging(0.7) TCGA-91-6830-01 22 24509645 24509645 G A CABIN1 Silent p.K1410K 0.12 TCGA-91-6830-01 22 30061031 30061031 C G NF2 Nonsense_Mutation p.S288* 0.16 TCGA-91-6830-01 22 30572117 30572117 C T HORMAD2 Silent p.V295V 0.10 TCGA-91-6830-01 22 35811832 35811832 C G MCM5 Missense_Mutation p.S405C 0.11 deleterious(0) probably_damaging(0.999) TCGA-91-6830-01 22 38320698 38320698 G A MICALL1 Silent p.P352P 0.16 TCGA-91-6830-01 22 38328813 38328813 G A MICALL1 Missense_Mutation p.E718K 0.18 deleterious(0) probably_damaging(0.999) TCGA-91-6830-01 22 50718193 50718193 C A PLXNB2 Nonsense_Mutation p.E1419* 0.12 TCGA-91-6830-01 2 11738826 11738826 C G GREB1 Missense_Mutation p.L725V 0.07 tolerated(0.07) benign(0.021) TCGA-91-6830-01 2 135107508 135107508 C - MGAT5 Frame_Shift_Del p.P416Lfs*17 0.13 TCGA-91-6830-01 2 158140947 158140947 C T GALNT5 Silent p.D536D 0.23 TCGA-91-6830-01 2 166532912 166532912 G A CSRNP3 Missense_Mutation p.E167K 0.04 deleterious(0) probably_damaging(0.991) TCGA-91-6830-01 2 168100037 168100037 A G XIRP2 Missense_Mutation p.E712G 0.16 probably_damaging(1) TCGA-91-6830-01 2 169763265 169763265 C T G6PC2 Nonsense_Mutation p.Q178* 0.13 TCGA-91-6830-01 2 171700629 171700629 G A GAD1 Missense_Mutation p.G238E 0.11 deleterious(0) probably_damaging(1) TCGA-91-6830-01 2 179425394 179425394 C T TTN Missense_Mutation p.E28489K 0.09 TCGA-91-6830-01 2 204304406 204304406 G C RAPH1 Silent p.L1169L 0.08 TCGA-91-6830-01 2 208693029 208693029 C T PLEKHM3 3'UTR 0.10 TCGA-91-6830-01 2 208693066 208693066 C G PLEKHM3 Missense_Mutation p.E755Q 0.08 deleterious(0.04) probably_damaging(0.998) TCGA-91-6830-01 2 215865683 215865683 G C ABCA12 Silent p.V975V 0.14 TCGA-91-6830-01 2 216964811 216964811 G C TMEM169 Missense_Mutation p.R147T 0.09 tolerated(0.15) benign(0.007) TCGA-91-6830-01 2 219612093 219612093 G C TTLL4 Missense_Mutation p.Q749H 0.09 deleterious(0) probably_damaging(1) TCGA-91-6830-01 2 234465641 234465641 C G USP40 Missense_Mutation p.E148Q 0.10 deleterious(0) probably_damaging(1) TCGA-91-6830-01 2 25505430 25505431 - C DNMT3A Frame_Shift_Ins p.Q110Afs*14 0.17 TCGA-91-6830-01 2 25606753 25606753 C T DTNB Missense_Mutation p.E611K 0.10 tolerated(0.17) benign(0.081) TCGA-91-6830-01 2 25705667 25705667 C G DTNB Missense_Mutation p.K359N 0.20 tolerated(0.09) benign(0.409) TCGA-91-6830-01 2 30748605 30748605 G T LCLAT1 Missense_Mutation p.W88L 0.16 deleterious(0.01) probably_damaging(0.931) TCGA-91-6830-01 2 55254100 55254100 G C RTN4 Missense_Mutation p.P379A 0.13 deleterious(0.01) benign(0.407) TCGA-91-6830-01 2 61258828 61258828 G A PEX13 Missense_Mutation p.E123K 0.08 deleterious(0) probably_damaging(0.982) TCGA-91-6830-01 2 75113751 75113751 G A HK2 Missense_Mutation p.E724K 0.11 tolerated(0.3) possibly_damaging(0.53) TCGA-91-6830-01 2 84806723 84806723 G A DNAH6 Missense_Mutation p.E717K 0.07 tolerated(0.4) benign(0.004) TCGA-91-6830-01 2 88828655 88828655 C T TEX37 Missense_Mutation p.P69L 0.07 deleterious_low_confidence(0.02) benign(0) TCGA-91-6830-01 2 9770412 9770412 G A YWHAQ Missense_Mutation p.S57F 0.09 deleterious_low_confidence(0.03) benign(0.252) TCGA-91-6830-01 2 99812190 99812190 G C MRPL30 3'UTR 0.09 TCGA-91-6830-01 3 100352183 100352183 G A GPR128 Missense_Mutation p.G137R 0.10 tolerated(0.08) probably_damaging(0.956) TCGA-91-6830-01 3 101080669 101080669 C G SENP7 Missense_Mutation p.E505Q 0.13 tolerated(0.09) probably_damaging(0.947) TCGA-91-6830-01 3 112647919 112647919 G A CD200R1 Intron 0.15 TCGA-91-6830-01 3 127294632 127294632 G T TPRA1 Silent p.I210I 0.19 TCGA-91-6830-01 3 130714889 130714889 C T ATP2C1 Missense_Mutation p.S721F 0.08 tolerated(0.27) possibly_damaging(0.705) TCGA-91-6830-01 3 150127773 150127773 G A TSC22D2 Silent p.A212A 0.10 TCGA-91-6830-01 3 150127774 150127774 G A TSC22D2 Missense_Mutation p.E213K 0.11 deleterious(0.01) benign(0.292) TCGA-91-6830-01 3 152880634 152880634 C T RAP2B Missense_Mutation p.S51L 0.12 deleterious(0.02) probably_damaging(0.983) TCGA-91-6830-01 3 154011591 154011591 C G DHX36 Missense_Mutation p.R539T 0.13 tolerated(0.19) benign(0.2) TCGA-91-6830-01 3 154832920 154832920 G C MME Missense_Mutation p.D112H 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-91-6830-01 3 172052736 172052736 G A FNDC3B Silent p.L548L 0.09 TCGA-91-6830-01 3 180381717 180381717 C G CCDC39 Missense_Mutation p.E50Q 0.10 deleterious(0) possibly_damaging(0.522) TCGA-91-6830-01 3 182683451 182683451 G C DCUN1D1 Missense_Mutation p.Q32E 0.07 tolerated(0.22) benign(0.028) TCGA-91-6830-01 3 183858262 183858262 C G EIF2B5 Silent p.V300V 0.03 TCGA-91-6830-01 3 183909032 183909032 C A ABCF3 Missense_Mutation p.R520S 0.29 deleterious(0) probably_damaging(1) TCGA-91-6830-01 3 193201744 193201744 G A ATP13A4 Silent p.V263V 0.05 TCGA-91-6830-01 3 196509565 196509565 G A PAK2 Silent p.V16V 0.09 TCGA-91-6830-01 3 196534778 196534778 G C PAK2 Missense_Mutation p.E234D 0.08 tolerated(0.18) benign(0.001) TCGA-91-6830-01 3 36873842 36873842 T A TRANK1 Missense_Mutation p.E2367V 0.14 tolerated(0.15) possibly_damaging(0.883) TCGA-91-6830-01 3 50369288 50369288 C G RASSF1 Splice_Site p.X159_splice 0.11 TCGA-91-6830-01 3 52437226 52437226 G A BAP1 Silent p.A606A 0.11 TCGA-91-6830-01 3 52556687 52556687 C G STAB1 Missense_Mutation p.L2243V 0.22 deleterious(0) probably_damaging(0.994) TCGA-91-6830-01 3 52557144 52557144 C G STAB1 Missense_Mutation p.F2338L 0.19 deleterious(0) probably_damaging(0.962) TCGA-91-6830-01 3 72428503 72428504 - T RYBP Frame_Shift_Ins p.E168Gfs*7 0.17 TCGA-91-6830-01 3 73433779 73433779 G A PDZRN3 Silent p.F646F 0.24 TCGA-91-6830-01 4 119615608 119615608 G C METTL14 Missense_Mutation p.E144Q 0.15 tolerated(0.1) benign(0.324) TCGA-91-6830-01 4 188924516 188924516 G C ZFP42 Silent p.L185L 0.07 TCGA-91-6830-01 4 46314639 46314639 A T GABRA2 Missense_Mutation p.M117K 0.22 deleterious(0) possibly_damaging(0.794) TCGA-91-6830-01 5 102513595 102513595 G A PPIP5K2 Missense_Mutation p.E890K 0.13 deleterious(0) probably_damaging(0.987) TCGA-91-6830-01 5 110428061 110428061 C G WDR36 Silent p.L25L 0.07 TCGA-91-6830-01 5 111540179 111540179 G C EPB41L4A Silent p.L423L 0.10 TCGA-91-6830-01 5 118264410 118264410 G A DTWD2 Missense_Mutation p.S140L 0.08 tolerated(0.06) benign(0.174) TCGA-91-6830-01 5 132409787 132409787 C T HSPA4 Missense_Mutation p.S211F 0.09 tolerated(0.06) probably_damaging(0.982) TCGA-91-6830-01 5 141041628 141041628 G A ARAP3 Missense_Mutation p.R999C 0.08 tolerated(0.16) probably_damaging(0.978) TCGA-91-6830-01 5 148206482 148206482 G T ADRB2 Nonsense_Mutation p.E30* 0.09 TCGA-91-6830-01 5 160047603 160047603 C G ATP10B Missense_Mutation p.D723H 0.10 deleterious(0) probably_damaging(1) TCGA-91-6830-01 5 176024834 176024834 C T GPRIN1 Missense_Mutation p.E668K 0.08 tolerated(0.13) probably_damaging(0.99) TCGA-91-6830-01 5 179221066 179221066 C A LTC4S 5'UTR 0.15 TCGA-91-6830-01 5 180661721 180661721 C G TRIM41 Silent p.V613V 0.06 TCGA-91-6830-01 5 56224647 56224647 C G MIER3 Missense_Mutation p.E290Q 0.11 deleterious(0) probably_damaging(0.922) TCGA-91-6830-01 5 78379134 78379134 C G BHMT2 Missense_Mutation p.L240V 0.09 tolerated(0.42) benign(0.23) TCGA-91-6830-01 5 79733151 79733151 C G ZFYVE16 Nonsense_Mutation p.S216* 0.25 TCGA-91-6830-01 5 9337859 9337859 C G SEMA5A Missense_Mutation p.D64H 0.05 deleterious(0) probably_damaging(0.994) TCGA-91-6830-01 6 107419877 107419877 C T BEND3 Missense_Mutation p.E40K 0.08 deleterious_low_confidence(0.03) benign(0.226) TCGA-91-6830-01 6 111214205 111214205 G C AMD1 Silent p.L267L 0.10 TCGA-91-6830-01 6 111587203 111587203 G C KIAA1919 Silent p.P146P 0.11 TCGA-91-6830-01 6 117665407 117665407 A - ROS1 Frame_Shift_Del p.L1447Qfs*57 0.13 TCGA-91-6830-01 6 12124299 12124299 G C HIVEP1 Missense_Mutation p.R1424T 0.07 deleterious(0) probably_damaging(0.999) TCGA-91-6830-01 6 137519656 137519656 G C IFNGR1 Missense_Mutation p.P328A 0.11 tolerated(0.16) possibly_damaging(0.465) TCGA-91-6830-01 6 144794970 144794970 G A UTRN Splice_Site p.X1060_splice 0.13 TCGA-91-6830-01 6 150321245 150321245 G T RAET1K RNA 0.16 TCGA-91-6830-01 6 169634857 169634857 C G THBS2 Missense_Mutation p.Q541H 0.12 deleterious(0.04) benign(0.003) TCGA-91-6830-01 6 2769019 2769019 G A WRNIP1 Missense_Mutation p.R306Q 0.09 deleterious(0) possibly_damaging(0.832) TCGA-91-6830-01 6 31237136 31237136 C T HLA-C Missense_Mutation p.E359K 0.15 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-91-6830-01 6 35477054 35477054 C T TULP1 Missense_Mutation p.E252K 0.04 tolerated(0.11) benign(0.017) TCGA-91-6830-01 6 35477522 35477522 C T TULP1 Missense_Mutation p.G203R 0.09 deleterious_low_confidence(0.04) benign(0.041) TCGA-91-6830-01 6 42932587 42932587 G C PEX6 Missense_Mutation p.S916C 0.08 deleterious(0.01) possibly_damaging(0.67) TCGA-91-6830-01 6 51732862 51732862 G A PKHD1 Missense_Mutation p.S2511L 0.10 deleterious(0) benign(0.15) TCGA-91-6830-01 6 70871820 70871820 G C COL19A1 Missense_Mutation p.G774A 0.12 deleterious(0.01) probably_damaging(1) TCGA-91-6830-01 6 76734932 76734932 C T IMPG1 Missense_Mutation p.E181K 0.09 tolerated(0.14) benign(0.02) TCGA-91-6830-01 6 90390458 90390458 C G MDN1 Missense_Mutation p.E4039Q 0.10 benign(0.327) TCGA-91-6830-01 7 106840728 106840728 G C HBP1 Missense_Mutation p.K503N 0.16 deleterious(0) probably_damaging(0.999) TCGA-91-6830-01 7 107427285 107427285 C T SLC26A3 Missense_Mutation p.D320N 0.11 tolerated(0.84) benign(0.002) TCGA-91-6830-01 7 117431919 117431919 C T CTTNBP2 Missense_Mutation p.R444Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-91-6830-01 7 123190613 123190613 G C NDUFA5 Missense_Mutation p.L32V 0.05 deleterious(0) possibly_damaging(0.67) TCGA-91-6830-01 7 128394368 128394368 G A CALU Intron 0.11 TCGA-91-6830-01 7 135277877 135277877 C T NUP205 Silent p.I589I 0.11 TCGA-91-6830-01 7 138264004 138264004 C G TRIM24 Missense_Mutation p.S771C 0.08 deleterious(0.05) benign(0.401) TCGA-91-6830-01 7 138968377 138968377 C G UBN2 Missense_Mutation p.S909C 0.17 tolerated_low_confidence(0.12) probably_damaging(0.995) TCGA-91-6830-01 7 142566852 142566852 G T EPHB6 Silent p.V803V 0.08 TCGA-91-6830-01 7 142568550 142568550 G A EPHB6 Missense_Mutation p.D987N 0.07 deleterious(0) probably_damaging(1) TCGA-91-6830-01 7 144060319 144060319 G A ARHGEF5 Missense_Mutation p.C186Y 0.08 deleterious(0.01) benign(0.006) TCGA-91-6830-01 7 151791494 151791494 G A GALNT11 Missense_Mutation p.R61Q 0.08 tolerated(0.18) benign(0.017) TCGA-91-6830-01 7 151945526 151945526 C T KMT2C Missense_Mutation p.E665K 0.11 benign(0.002) TCGA-91-6830-01 7 151945589 151945589 C T KMT2C Missense_Mutation p.E644K 0.11 benign(0.003) TCGA-91-6830-01 7 31124408 31124408 C T ADCYAP1R1 Silent p.L165L 0.07 TCGA-91-6830-01 7 31793087 31793087 C T PDE1C Missense_Mutation p.D741N 0.12 deleterious_low_confidence(0.01) benign(0.156) TCGA-91-6830-01 7 64292443 64292443 G A ZNF138 Missense_Mutation p.E249K 0.17 deleterious(0.02) benign(0.021) TCGA-91-6830-01 7 73107997 73107997 G C WBSCR22 Missense_Mutation p.E214Q 0.04 tolerated(0.32) benign(0.018) TCGA-91-6830-01 7 75070235 75070235 C G POM121C Missense_Mutation p.R75T 0.04 deleterious(0) probably_damaging(0.981) TCGA-91-6830-01 7 76254922 76254922 C T POMZP3 Silent p.L48L 0.06 TCGA-91-6830-01 7 82546170 82546170 A G PCLO Missense_Mutation p.M3711T 0.14 unknown(0) TCGA-91-6830-01 7 86978488 86978488 A C CROT Missense_Mutation p.Y35S 0.19 deleterious(0) probably_damaging(0.931) TCGA-91-6830-01 8 130764991 130764991 G C GSDMC Missense_Mutation p.S266C 0.05 tolerated(0.1) benign(0.327) TCGA-91-6830-01 8 132996518 132996518 G T EFR3A Missense_Mutation p.D570Y 0.16 deleterious(0) probably_damaging(0.996) TCGA-91-6830-01 8 142437124 142437124 C T PTP4A3 Missense_Mutation p.A95V 0.06 deleterious(0.01) benign(0.049) TCGA-91-6830-01 8 145134932 145134932 C T EXOSC4 Silent p.R86R 0.14 TCGA-91-6830-01 8 1905125 1905125 G A ARHGEF10 Missense_Mutation p.G1244E 0.11 deleterious(0.04) probably_damaging(0.99) TCGA-91-6830-01 8 57354182 57354182 G A PENK Silent p.A151A 0.13 TCGA-91-6830-01 8 74204485 74204485 G A RPL7 Silent p.I93I 0.11 TCGA-91-6830-01 8 82571627 82571627 C G IMPA1 Missense_Mutation p.E324Q 0.07 tolerated(0.49) benign(0.144) TCGA-91-6830-01 8 94748573 94748573 G A RBM12B Silent p.F22F 0.10 TCGA-91-6830-01 9 116246510 116246510 C T RGS3 Silent p.F206F 0.10 TCGA-91-6830-01 9 130982498 130982498 G T DNM1 Missense_Mutation p.D243Y 0.19 tolerated(0.09) probably_damaging(0.955) TCGA-91-6830-01 9 130982538 130982538 G A DNM1 Missense_Mutation p.R256Q 0.18 tolerated(0.16) benign(0.229) TCGA-91-6830-01 9 130984587 130984587 G A DNM1 Missense_Mutation p.D321N 0.30 deleterious(0) probably_damaging(0.999) TCGA-91-6830-01 9 139277757 139277757 C T SNAPC4 Missense_Mutation p.G622R 0.29 tolerated(0.42) benign(0.014) TCGA-91-6830-01 9 21077774 21077774 C T IFNB1 Missense_Mutation p.R32K 0.17 tolerated(0.38) possibly_damaging(0.451) TCGA-91-6830-01 X 106111667 106111667 C A TBC1D8B Missense_Mutation p.L925I 0.11 tolerated(0.24) benign(0.016) TCGA-91-6830-01 X 106310852 106310852 C G RBM41 Missense_Mutation p.E383Q 0.12 tolerated(0.16) probably_damaging(0.934) TCGA-91-6830-01 X 109695254 109695254 C A RGAG1 Missense_Mutation p.A470D 0.11 tolerated(0.11) benign(0.056) TCGA-91-6830-01 X 117796680 117796680 G C DOCK11 Missense_Mutation p.K1667N 0.13 tolerated(0.43) possibly_damaging(0.549) TCGA-91-6830-01 X 117960017 117960017 C G ZCCHC12 Silent p.L270L 0.14 TCGA-91-6830-01 X 129200612 129200612 G T ELF4 3'UTR 0.17 TCGA-91-6830-01 X 133119399 133119399 G A GPC3 Silent p.P26P 0.45 TCGA-91-6830-01 X 135326890 135326890 C A MAP7D3 Missense_Mutation p.M106I 0.17 tolerated(0.14) benign(0.041) TCGA-91-6830-01 X 135618272 135618272 C A VGLL1 Silent p.T31T 0.17 TCGA-91-6830-01 X 139866681 139866681 C T CDR1 5'UTR 0.21 TCGA-91-6830-01 X 144905987 144905987 G C SLITRK2 Missense_Mutation p.G682R 0.09 tolerated(0.06) probably_damaging(0.95) TCGA-91-6830-01 X 144905988 144905988 G T SLITRK2 Missense_Mutation p.G682V 0.08 deleterious(0) possibly_damaging(0.842) TCGA-91-6830-01 X 148798460 148798460 C T MAGEA11 3'UTR 0.16 TCGA-91-6830-01 X 153296254 153296254 G A MECP2 Missense_Mutation p.P354L 0.16 deleterious(0.01) benign(0.001) TCGA-91-6830-01 X 153997527 153997527 T C DKC1 Missense_Mutation p.V286A 0.08 deleterious(0) benign(0.297) TCGA-91-6830-01 X 23353199 23353199 C T PTCHD1 Silent p.L69L 0.19 TCGA-91-6830-01 X 2856180 2856180 G A ARSE Silent p.F415F 0.05 TCGA-91-6830-01 X 48887490 48887490 G A TFE3 3'UTR 0.09 TCGA-91-6830-01 X 50213528 50213528 C T DGKK RNA 0.14 TCGA-91-6830-01 X 70357597 70357597 C T MED12 Missense_Mutation p.H1950Y 0.10 possibly_damaging(0.589) TCGA-91-6830-01 X 73962796 73962796 G C KIAA2022 Silent p.T532T 0.13 TCGA-91-6831-01 10 21884350 21884350 C T MLLT10 Missense_Mutation p.P129L 0.34 deleterious(0.01) benign(0.08) TCGA-91-6831-01 10 23321787 23321787 C A ARMC3 Intron 0.34 TCGA-91-6831-01 10 38647260 38647260 G C HSD17B7P2 RNA 0.45 TCGA-91-6831-01 10 68688212 68688212 T C LRRTM3 Splice_Site p.X512_splice 0.34 TCGA-91-6831-01 10 70451167 70451167 G T TET1 Missense_Mutation p.D2003Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-91-6831-01 10 72300887 72300887 G T PALD1 Silent p.R646R 0.32 TCGA-91-6831-01 11 102825237 102825237 G T MMP13 Missense_Mutation p.T154N 0.38 deleterious(0.02) probably_damaging(0.923) TCGA-91-6831-01 11 117038152 117038152 G T PAFAH1B2 Missense_Mutation p.G143C 0.51 deleterious(0) probably_damaging(0.989) TCGA-91-6831-01 11 124134898 124134898 A T OR8G5 Missense_Mutation p.Q59L 0.41 deleterious(0) possibly_damaging(0.885) TCGA-91-6831-01 11 124253209 124253209 C G OR8B2 Missense_Mutation p.E11Q 0.13 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-91-6831-01 11 124763789 124763789 G A ROBO4 Missense_Mutation p.R491C 0.12 deleterious(0.02) benign(0.014) TCGA-91-6831-01 11 128774402 128774402 C T C11orf45 Silent p.T20T 0.12 TCGA-91-6831-01 11 1316878 1316878 T C TOLLIP Silent p.V60V 0.31 TCGA-91-6831-01 11 31327171 31327171 T C DCDC1 Missense_Mutation p.K249E 0.28 tolerated(0.13) benign(0.046) TCGA-91-6831-01 11 43511885 43511885 C T TTC17 Missense_Mutation p.H1043Y 0.26 deleterious(0.01) possibly_damaging(0.844) TCGA-91-6831-01 11 43702283 43702283 T C HSD17B12 5'UTR 0.11 TCGA-91-6831-01 11 45671388 45671388 G A CHST1 Silent p.F362F 0.20 TCGA-91-6831-01 11 48328205 48328205 G A OR4S1 Missense_Mutation p.G144E 0.24 tolerated(0.09) possibly_damaging(0.864) TCGA-91-6831-01 11 49170214 49170214 C A FOLH1 Silent p.G680G 0.17 TCGA-91-6831-01 11 5475230 5475230 C A OR51I2 Missense_Mutation p.S171Y 0.49 deleterious(0) probably_damaging(0.941) TCGA-91-6831-01 11 55032470 55032470 G T TRIM48 Missense_Mutation p.G47W 0.18 deleterious(0) probably_damaging(1) TCGA-91-6831-01 11 55999849 55999849 T G OR5T2 Missense_Mutation p.E271D 0.37 deleterious(0.03) benign(0.139) TCGA-91-6831-01 11 56128574 56128574 T A OR8J1 Silent p.P284P 0.44 TCGA-91-6831-01 11 57076490 57076490 T A TNKS1BP1 Missense_Mutation p.N1232I 0.16 deleterious(0) benign(0.053) TCGA-91-6831-01 11 58380279 58380279 G T ZFP91 Missense_Mutation p.C318F 0.19 deleterious(0) probably_damaging(0.996) TCGA-91-6831-01 11 65810495 65810495 T G GAL3ST3 Missense_Mutation p.D260A 0.13 deleterious(0) possibly_damaging(0.589) TCGA-91-6831-01 11 6661991 6661991 C A DCHS1 Missense_Mutation p.G285V 0.53 deleterious(0) probably_damaging(0.995) TCGA-91-6831-01 11 7818148 7818148 C A OR5P2 Missense_Mutation p.M114I 0.22 deleterious(0.01) probably_damaging(1) TCGA-91-6831-01 11 88583183 88583183 A T GRM5 Missense_Mutation p.L268M 0.49 deleterious(0.01) probably_damaging(0.998) TCGA-91-6831-01 12 104149163 104149163 C G STAB2 Silent p.G2266G 0.25 TCGA-91-6831-01 12 11150167 11150167 C A TAS2R20 Missense_Mutation p.S103I 0.19 deleterious(0) probably_damaging(0.988) TCGA-91-6831-01 12 117715889 117715889 C G NOS1 Missense_Mutation p.Q513H 0.41 tolerated(0.08) possibly_damaging(0.881) TCGA-91-6831-01 12 129360514 129360514 G T GLT1D1 Nonsense_Mutation p.E42* 0.08 TCGA-91-6831-01 12 21353597 21353597 A T SLCO1B1 Missense_Mutation p.I376F 0.16 tolerated(1) benign(0.001) TCGA-91-6831-01 12 32134697 32134697 G A KIAA1551 Missense_Mutation p.A270T 0.44 deleterious(0.01) possibly_damaging(0.515) TCGA-91-6831-01 12 33560221 33560221 C A SYT10 Nonsense_Mutation p.E194* 0.35 TCGA-91-6831-01 12 49497572 49497572 T C LMBR1L Missense_Mutation p.T154A 0.40 tolerated(0.14) benign(0.026) TCGA-91-6831-01 12 5020916 5020916 G A KCNA1 Silent p.E124E 0.26 TCGA-91-6831-01 12 52962032 52962032 G A KRT74 Nonsense_Mutation p.Q426* 0.28 TCGA-91-6831-01 12 52986255 52986255 C A KRT72 Missense_Mutation p.M241I 0.39 deleterious(0.05) possibly_damaging(0.585) TCGA-91-6831-01 12 54059050 54059050 C A ATP5G2 3'UTR 0.50 TCGA-91-6831-01 12 57501993 57501993 G A STAT6 Silent p.P23P 0.12 TCGA-91-6831-01 12 58006846 58006846 C G ARHGEF25 Silent p.G116G 0.29 TCGA-91-6831-01 12 62928628 62928628 G T MON2 Missense_Mutation p.S546I 0.20 tolerated(0.19) benign(0.004) TCGA-91-6831-01 12 7303151 7303151 A G CLSTN3 Missense_Mutation p.I753V 0.39 tolerated(0.11) benign(0.023) TCGA-91-6831-01 12 97078910 97078910 A C C12orf55 Missense_Mutation p.N1970H 0.31 deleterious(0.04) benign(0.009) TCGA-91-6831-01 13 25017845 25017845 T A PARP4 Silent p.R1130R 0.59 TCGA-91-6831-01 13 46543169 46543169 C A ZC3H13 Silent p.T1170T 0.47 TCGA-91-6831-01 14 107179223 107179223 G T IGHV2-70 Missense_Mutation p.P14T 0.20 deleterious(0) probably_damaging(0.996) TCGA-91-6831-01 14 20404276 20404276 G T OR4K1 Missense_Mutation p.V151L 0.31 tolerated(0.07) possibly_damaging(0.513) TCGA-91-6831-01 14 21623231 21623231 G A OR5AU1 Silent p.S318S 0.28 TCGA-91-6831-01 14 23019543 23019543 G T TRAC Missense_Mutation p.R121L 0.40 deleterious(0) probably_damaging(1) TCGA-91-6831-01 14 28734290 28734290 G T BNIP3P1 RNA 0.31 TCGA-91-6831-01 14 36278087 36278087 C A RALGAPA1 5'UTR 0.50 TCGA-91-6831-01 14 39703403 39703403 C T MIA2 Missense_Mutation p.L29F 0.19 tolerated(0.51) benign(0.05) TCGA-91-6831-01 14 52781431 52781431 G T PTGER2 Silent p.G55G 0.15 TCGA-91-6831-01 14 89181381 89181381 C - EML5 Frame_Shift_Del p.G449Dfs*38 0.15 TCGA-91-6831-01 14 99641943 99641943 C T BCL11B Silent p.P410P 0.15 TCGA-91-6831-01 15 24923531 24923531 C T NPAP1 Silent p.T839T 0.21 TCGA-91-6831-01 15 35086936 35086936 C A ACTC1 Missense_Mutation p.G25V 0.44 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-91-6831-01 15 51535050 51535050 G A CYP19A1 Silent p.A20A 0.41 TCGA-91-6831-01 15 60740324 60740324 C A NARG2 Missense_Mutation p.D714Y 0.36 tolerated(1) possibly_damaging(0.59) TCGA-91-6831-01 15 65447222 65447222 C T CLPX Silent p.V503V 0.29 TCGA-91-6831-01 15 69006317 69006317 G T CORO2B Missense_Mutation p.M234I 0.48 tolerated(0.36) benign(0.001) TCGA-91-6831-01 15 75586094 75586094 G A GOLGA6D Missense_Mutation p.E540K 0.11 tolerated(0.12) probably_damaging(0.987) TCGA-91-6831-01 15 78730689 78730689 C A IREB2 Missense_Mutation p.P4T 0.21 tolerated_low_confidence(0.21) benign(0.022) TCGA-91-6831-01 15 86205617 86205617 A C AKAP13 Splice_Site p.X1582_splice 0.05 TCGA-91-6831-01 16 21214498 21214498 T C ZP2 Silent p.T349T 0.05 TCGA-91-6831-01 16 30021433 30021433 G T DOC2A Silent p.P37P 0.35 TCGA-91-6831-01 16 30035561 30035561 G A C16orf92 3'UTR 0.31 TCGA-91-6831-01 16 30080144 30080144 G C ALDOA Missense_Mutation p.D183H 0.13 deleterious(0.01) possibly_damaging(0.754) TCGA-91-6831-01 16 30748760 30748760 C T SRCAP Missense_Mutation p.P2467S 0.17 unknown(0) TCGA-91-6831-01 16 53706851 53706852 - T RPGRIP1L Frame_Shift_Ins p.R321Afs*8 0.28 TCGA-91-6831-01 16 61689618 61689618 G T CDH8 Silent p.S554S 0.17 TCGA-91-6831-01 16 61761041 61761041 G C CDH8 Missense_Mutation p.S498C 0.23 tolerated(0.08) possibly_damaging(0.628) TCGA-91-6831-01 16 70500067 70500067 G T FUK Missense_Mutation p.R106S 0.15 deleterious(0) probably_damaging(0.988) TCGA-91-6831-01 16 71710350 71710350 T A PHLPP2 Missense_Mutation p.R491W 0.40 deleterious(0) possibly_damaging(0.471) TCGA-91-6831-01 16 80718806 80718806 C G CDYL2 Missense_Mutation p.R82P 0.11 deleterious(0.05) possibly_damaging(0.773) TCGA-91-6831-01 16 86602465 86602465 C T FOXC2 3'UTR 0.16 TCGA-91-6831-01 17 25749241 25749241 G A TBC1D3P5 RNA 0.49 TCGA-91-6831-01 17 25749242 25749242 G T TBC1D3P5 RNA 0.49 TCGA-91-6831-01 17 26864298 26864298 G A FOXN1 Silent p.L597L 0.11 TCGA-91-6831-01 17 28576109 28576109 C A BLMH Nonsense_Mutation p.E432* 0.19 TCGA-91-6831-01 17 31048075 31048075 C A MYO1D Missense_Mutation p.A627S 0.47 deleterious(0) probably_damaging(0.997) TCGA-91-6831-01 17 34863665 34863665 C A MYO19 Missense_Mutation p.A444S 0.52 tolerated(0.2) benign(0.088) TCGA-91-6831-01 17 48186727 48186727 T C PDK2 Missense_Mutation p.M349T 0.19 deleterious(0.01) probably_damaging(0.991) TCGA-91-6831-01 17 48244787 48244787 G A SGCA Silent p.V32V 0.23 TCGA-91-6831-01 17 72351374 72351374 C A KIF19 Silent p.R974R 0.18 TCGA-91-6831-01 17 7324850 7324850 C A SPEM1 Missense_Mutation p.P286T 0.52 deleterious(0.03) probably_damaging(0.991) TCGA-91-6831-01 17 7574026 7574026 C A TP53 Missense_Mutation p.G334V 0.56 deleterious(0) probably_damaging(0.973) TCGA-91-6831-01 17 76087626 76087626 C G TNRC6C Missense_Mutation p.P1300R 0.25 deleterious(0.01) probably_damaging(1) TCGA-91-6831-01 17 8131487 8131487 T C CTC1 3'UTR 0.57 TCGA-91-6831-01 18 51025817 51025817 C A DCC Missense_Mutation p.L1350I 0.39 tolerated(0.87) benign(0.085) TCGA-91-6831-01 18 55315736 55315736 C A ATP8B1 Missense_Mutation p.R1247L 0.32 deleterious(0.03) benign(0.04) TCGA-91-6831-01 18 59483393 59483393 G A RNF152 Silent p.L102L 0.20 TCGA-91-6831-01 18 60241328 60241328 A G ZCCHC2 Missense_Mutation p.T672A 0.27 tolerated(0.48) benign(0.002) TCGA-91-6831-01 18 70526210 70526210 G A NETO1 Missense_Mutation p.P107L 0.24 deleterious(0) probably_damaging(1) TCGA-91-6831-01 19 10404521 10404521 G A ICAM5 Missense_Mutation p.G538E 0.29 deleterious(0.01) probably_damaging(0.977) TCGA-91-6831-01 19 12979910 12979910 G C MAST1 Missense_Mutation p.S935T 0.17 deleterious(0) probably_damaging(0.987) TCGA-91-6831-01 19 14040911 14040911 C T CC2D1A Missense_Mutation p.R911W 0.13 deleterious(0) probably_damaging(0.972) TCGA-91-6831-01 19 14910285 14910285 C G OR7C1 Missense_Mutation p.V222L 0.10 deleterious_low_confidence(0.03) benign(0.02) TCGA-91-6831-01 19 19989390 19989390 A C ZNF253 Missense_Mutation p.E35A 0.21 deleterious(0) probably_damaging(0.992) TCGA-91-6831-01 19 21366254 21366254 G T ZNF431 Missense_Mutation p.W383L 0.39 tolerated(0.65) benign(0.253) TCGA-91-6831-01 19 21366255 21366255 G T ZNF431 Missense_Mutation p.W383C 0.40 tolerated(0.21) possibly_damaging(0.871) TCGA-91-6831-01 19 2732928 2732928 C A SLC39A3 Missense_Mutation p.V256L 0.62 tolerated(0.78) benign(0.005) TCGA-91-6831-01 19 36044674 36044674 G A ATP4A Missense_Mutation p.P847S 0.18 deleterious(0) possibly_damaging(0.714) TCGA-91-6831-01 19 36336695 36336695 G C NPHS1 Missense_Mutation p.P545A 0.14 tolerated(0.66) possibly_damaging(0.545) TCGA-91-6831-01 19 36505076 36505076 C - ALKBH6 Splice_Site p.X20_splice 0.31 TCGA-91-6831-01 19 40556272 40556272 T A ZNF780B 5'UTR 0.40 TCGA-91-6831-01 19 40740980 40740980 C A AKT2 Missense_Mutation p.Q446H 0.15 deleterious(0) possibly_damaging(0.508) TCGA-91-6831-01 19 436423 436423 C T SHC2 Silent p.T261T 0.06 TCGA-91-6831-01 19 51128750 51128750 T A SYT3 Missense_Mutation p.N492Y 0.41 deleterious(0) possibly_damaging(0.823) TCGA-91-6831-01 19 51135967 51135967 G T SYT3 Silent p.R84R 0.44 TCGA-91-6831-01 19 52000177 52000177 G T SIGLEC12 Missense_Mutation p.T519K 0.38 tolerated(0.12) benign(0.218) TCGA-91-6831-01 19 52448120 52448120 G T ZNF613 Missense_Mutation p.R328S 0.25 deleterious(0) benign(0.002) TCGA-91-6831-01 19 52468138 52468138 T C ZNF350 Missense_Mutation p.Y523C 0.18 deleterious(0.01) benign(0.11) TCGA-91-6831-01 19 53304727 53304727 C T ZNF28 Missense_Mutation p.G124D 0.24 tolerated(1) benign(0) TCGA-91-6831-01 19 55107955 55107955 A G LILRA1 Silent p.S420S 0.45 TCGA-91-6831-01 19 55143593 55143593 C T LILRB1 Missense_Mutation p.P189L 0.41 deleterious(0.02) benign(0.042) TCGA-91-6831-01 19 57868288 57868288 G T ZNF304 Missense_Mutation p.V351F 0.35 tolerated(0.34) possibly_damaging(0.845) TCGA-91-6831-01 19 5917862 5917862 C T RANBP3 Missense_Mutation p.E535K 0.17 tolerated(0.15) probably_damaging(0.999) TCGA-91-6831-01 19 5997179 5997179 G A RFX2 Silent p.F635F 0.32 TCGA-91-6831-01 19 7810479 7810479 C G CD209 Missense_Mutation p.A225P 0.15 deleterious(0.02) benign(0.007) TCGA-91-6831-01 19 7810548 7810548 C G CD209 Missense_Mutation p.A202P 0.38 tolerated(0.07) probably_damaging(0.996) TCGA-91-6831-01 19 8138147 8138147 G A FBN3 Silent p.C2579C 0.12 TCGA-91-6831-01 19 9087924 9087924 C A MUC16 Missense_Mutation p.M1297I 0.58 unknown(0) TCGA-91-6831-01 19 9523936 9523936 G A ZNF266 3'UTR 0.59 TCGA-91-6831-01 1 12888465 12888465 G T PRAMEF11 Missense_Mutation p.P20H 0.17 deleterious(0) probably_damaging(1) TCGA-91-6831-01 1 145326097 145326097 C T NBPF10 Missense_Mutation p.R1324C 0.43 benign(0.001) TCGA-91-6831-01 1 147955193 147955193 G T PPIAL4A Missense_Mutation p.S51Y 0.50 deleterious_low_confidence(0.01) possibly_damaging(0.722) TCGA-91-6831-01 1 153177438 153177438 C G LELP1 Silent p.S85S 0.14 TCGA-91-6831-01 1 156126240 156126240 A G SEMA4A Missense_Mutation p.K59E 0.46 tolerated(0.68) benign(0.001) TCGA-91-6831-01 1 156307972 156307972 T C CCT3 Missense_Mutation p.M2V 0.14 tolerated(0.29) benign(0.007) TCGA-91-6831-01 1 158436195 158436195 A T OR10K1 Missense_Mutation p.T282S 0.46 deleterious(0) probably_damaging(0.999) TCGA-91-6831-01 1 158746817 158746817 A T OR6N2 Missense_Mutation p.N203K 0.51 deleterious(0.02) probably_damaging(0.99) TCGA-91-6831-01 1 160093794 160093794 A T ATP1A2 Missense_Mutation p.Q148L 0.16 deleterious(0) probably_damaging(0.985) TCGA-91-6831-01 1 16358738 16358738 G T CLCNKA Silent p.L599L 0.10 TCGA-91-6831-01 1 181705475 181705475 G C CACNA1E Missense_Mutation p.E1109D 0.60 tolerated(0.36) benign(0.217) TCGA-91-6831-01 1 186023004 186023004 G - HMCN1 Frame_Shift_Del p.G2251Afs*42 0.16 TCGA-91-6831-01 1 186315293 186315293 T C TPR Missense_Mutation p.R1024G 0.12 benign(0.001) TCGA-91-6831-01 1 201294883 201294883 G A PKP1 Missense_Mutation p.A696T 0.62 tolerated(0.56) benign(0.001) TCGA-91-6831-01 1 204197888 204197888 C T PLEKHA6 Silent p.V951V 0.11 TCGA-91-6831-01 1 204943311 204943311 G T NFASC Silent p.V428V 0.52 TCGA-91-6831-01 1 205389623 205389623 G A LEMD1 Silent p.N14N 0.17 TCGA-91-6831-01 1 207195331 207195331 A G C1orf116 Missense_Mutation p.L593P 0.47 deleterious(0) probably_damaging(1) TCGA-91-6831-01 1 223959907 223959907 A G CAPN2 Missense_Mutation p.E682G 0.47 tolerated(0.05) possibly_damaging(0.454) TCGA-91-6831-01 1 228504513 228504513 G T OBSCN Missense_Mutation p.E5420D 0.21 possibly_damaging(0.799) TCGA-91-6831-01 1 23409697 23409697 G A KDM1A Missense_Mutation p.G824E 0.10 deleterious(0) probably_damaging(1) TCGA-91-6831-01 1 236925911 236925911 G T ACTN2 Missense_Mutation p.D893Y 0.55 deleterious(0) probably_damaging(0.997) TCGA-91-6831-01 1 241946635 241946635 T A WDR64 Missense_Mutation p.V876E 0.15 tolerated(0.26) benign(0.192) TCGA-91-6831-01 1 248685829 248685829 C A OR2G6 Missense_Mutation p.N294K 0.42 deleterious(0.01) possibly_damaging(0.686) TCGA-91-6831-01 1 27089625 27089625 G C ARID1A Missense_Mutation p.A861P 0.17 unknown(0) TCGA-91-6831-01 1 2938383 2938383 C T ACTRT2 Nonsense_Mutation p.Q45* 0.12 TCGA-91-6831-01 1 31351564 31351564 G C SDC3 Missense_Mutation p.N54K 0.19 deleterious(0.01) probably_damaging(0.974) TCGA-91-6831-01 1 34663081 34663081 C T C1orf94 Silent p.P192P 0.20 TCGA-91-6831-01 1 39876924 39876924 G T KIAA0754 Missense_Mutation p.M193I 0.37 benign(0.043) TCGA-91-6831-01 1 40148229 40148229 C T HPCAL4 Silent p.L185L 0.32 TCGA-91-6831-01 1 43777704 43777705 - A TIE1 Frame_Shift_Ins p.T513Dfs*32 0.27 TCGA-91-6831-01 1 46120260 46120260 C A GPBP1L1 Missense_Mutation p.K144N 0.15 deleterious(0) possibly_damaging(0.705) TCGA-91-6831-01 1 52991905 52991905 C T ZCCHC11 Silent p.K16K 0.28 TCGA-91-6831-01 1 6169915 6169915 G T CHD5 Missense_Mutation p.Q1840K 0.33 deleterious(0.02) possibly_damaging(0.705) TCGA-91-6831-01 1 67592863 67592863 C A C1orf141 Missense_Mutation p.A21S 0.20 tolerated(0.53) probably_damaging(0.971) TCGA-91-6831-01 1 75038834 75038834 C A C1orf173 Missense_Mutation p.G854W 0.31 deleterious(0) possibly_damaging(0.498) TCGA-91-6831-01 1 82408796 82408796 G A LPHN2 Missense_Mutation p.D181N 0.31 deleterious(0) probably_damaging(0.988) TCGA-91-6831-01 1 85634849 85634849 C G SYDE2 Missense_Mutation p.E911Q 0.32 tolerated(0.33) possibly_damaging(0.764) TCGA-91-6831-01 1 85647781 85647781 C G SYDE2 Missense_Mutation p.Q848H 0.08 deleterious(0) probably_damaging(1) TCGA-91-6831-01 1 89480279 89480279 C T GBP3 Missense_Mutation p.V127M 0.25 deleterious(0) probably_damaging(0.959) TCGA-91-6831-01 1 90400997 90400997 C G LRRC8D Silent p.L790L 0.33 TCGA-91-6831-01 1 978964 978964 C G AGRN Silent p.T550T 0.25 TCGA-91-6831-01 20 35467637 35467643 GACCACG - SOGA1 Frame_Shift_Del p.R297Wfs*62 0.10 TCGA-91-6831-01 20 43249676 43249676 C T ADA Missense_Mutation p.E320K 0.60 tolerated(0.17) benign(0.034) TCGA-91-6831-01 20 61040522 61040522 T A GATA5 Splice_Site p.X305_splice 0.45 TCGA-91-6831-01 21 11097607 11097607 G A BAGE2 RNA 0.06 TCGA-91-6831-01 21 45994771 45994771 C A KRTAP10-4 Missense_Mutation p.S379Y 0.21 deleterious(0) unknown(0) TCGA-91-6831-01 22 19471469 19471469 C T CDC45 Missense_Mutation p.H143Y 0.63 deleterious(0.02) benign(0.317) TCGA-91-6831-01 22 26859974 26859974 A T HPS4 Missense_Mutation p.M541K 0.22 deleterious(0.02) benign(0.209) TCGA-91-6831-01 22 43870629 43870629 C G MPPED1 Nonsense_Mutation p.Y140* 0.65 TCGA-91-6831-01 2 10583844 10583844 C T ODC1 Missense_Mutation p.D190N 0.21 tolerated(0.09) benign(0.07) TCGA-91-6831-01 2 107446536 107446536 G C ST6GAL2 Missense_Mutation p.S435C 0.38 probably_damaging(1) TCGA-91-6831-01 2 110332300 110332300 T C SEPT10 Missense_Mutation p.Y153C 0.40 deleterious(0.01) probably_damaging(1) TCGA-91-6831-01 2 112767591 112767591 A G MERTK Missense_Mutation p.Y676C 0.32 deleterious(0) probably_damaging(1) TCGA-91-6831-01 2 113420521 113420521 C T SLC20A1 Silent p.A653A 0.32 TCGA-91-6831-01 2 131102212 131102212 G T IMP4 Silent p.L41L 0.43 TCGA-91-6831-01 2 133542094 133542094 C A NCKAP5 Missense_Mutation p.V764L 0.16 tolerated(0.43) benign(0.041) TCGA-91-6831-01 2 135027974 135027974 G C MGAT5 Missense_Mutation p.A87P 0.07 deleterious(0.01) possibly_damaging(0.835) TCGA-91-6831-01 2 135988167 135988167 C G ZRANB3 Missense_Mutation p.G624R 0.18 tolerated(0.52) benign(0.053) TCGA-91-6831-01 2 136564899 136564899 C A LCT Missense_Mutation p.W1324C 0.44 deleterious(0) probably_damaging(1) TCGA-91-6831-01 2 152521927 152521927 G T NEB Missense_Mutation p.P1720T 0.44 probably_damaging(0.997) TCGA-91-6831-01 2 15701345 15701345 G C NBAS Silent p.V28V 0.03 TCGA-91-6831-01 2 163302909 163302909 C T KCNH7 Silent p.Q391Q 0.31 TCGA-91-6831-01 2 1643180 1643180 C T PXDN Missense_Mutation p.G1323R 0.24 tolerated(0.06) possibly_damaging(0.557) TCGA-91-6831-01 2 170060630 170060630 C A LRP2 Missense_Mutation p.G2623W 0.17 probably_damaging(1) TCGA-91-6831-01 2 17698928 17698928 C G RAD51AP2 Missense_Mutation p.R252T 0.11 deleterious(0.01) probably_damaging(0.925) TCGA-91-6831-01 2 179443697 179443697 A T TTN Missense_Mutation p.V22687E 0.34 TCGA-91-6831-01 2 179568920 179568920 G T TTN Silent p.T10059T 0.14 TCGA-91-6831-01 2 179593685 179593685 C A TTN Silent p.G6360G 0.33 TCGA-91-6831-01 2 179593686 179593686 C A TTN Missense_Mutation p.G6360V 0.34 TCGA-91-6831-01 2 179603970 179603970 C G TTN Missense_Mutation p.D4664H 0.10 TCGA-91-6831-01 2 182850701 182850701 G T PPP1R1C 5'UTR 0.24 TCGA-91-6831-01 2 1915812 1915812 G A MYT1L Silent p.S561S 0.18 TCGA-91-6831-01 2 19553013 19553013 G C OSR1 Missense_Mutation p.T185S 0.15 tolerated(0.2) possibly_damaging(0.512) TCGA-91-6831-01 2 196689130 196689130 A G DNAH7 Missense_Mutation p.L3047S 0.20 deleterious(0) probably_damaging(1) TCGA-91-6831-01 2 202260067 202260067 C A TRAK2 Missense_Mutation p.Q290H 0.11 deleterious(0) probably_damaging(0.997) TCGA-91-6831-01 2 207527633 207527633 G A DYTN Missense_Mutation p.P543S 0.15 tolerated(0.12) benign(0.23) TCGA-91-6831-01 2 219000278 219000278 G T CXCR2 Missense_Mutation p.V252F 0.18 deleterious(0) possibly_damaging(0.839) TCGA-91-6831-01 2 225362561 225362561 T C CUL3 Missense_Mutation p.Y539C 0.21 deleterious(0) probably_damaging(0.999) TCGA-91-6831-01 2 238277679 238277679 C G COL6A3 Missense_Mutation p.G1476A 0.11 probably_damaging(0.991) TCGA-91-6831-01 2 25966399 25966399 T C ASXL2 Missense_Mutation p.N936S 0.29 tolerated(0.84) benign(0.027) TCGA-91-6831-01 2 29551313 29551313 G A ALK Silent p.S439S 0.41 TCGA-91-6831-01 2 36775852 36775852 C A CRIM1 3'UTR 0.49 TCGA-91-6831-01 2 49210068 49210068 G T FSHR Silent p.A217A 0.20 TCGA-91-6831-01 2 49216143 49216143 A G FSHR Missense_Mutation p.V166A 0.37 tolerated(0.55) benign(0.001) TCGA-91-6831-01 2 53992614 53992615 - T ASB3 Frame_Shift_Ins p.R69Pfs*7 0.29 TCGA-91-6831-01 2 68804987 68804987 G T APLF Missense_Mutation p.G457W 0.31 deleterious(0) probably_damaging(0.995) TCGA-91-6831-01 2 72562101 72562101 T A EXOC6B Missense_Mutation p.Q724L 0.37 tolerated(0.47) benign(0.003) TCGA-91-6831-01 2 73677420 73677420 A T ALMS1 Missense_Mutation p.N1255Y 0.26 possibly_damaging(0.709) TCGA-91-6831-01 2 8873800 8873800 A G KIDINS220 Missense_Mutation p.M1276T 0.23 deleterious(0) benign(0.082) TCGA-91-6831-01 2 90198768 90198768 C A IGKV1D-12 Missense_Mutation p.P18Q 0.32 tolerated(0.1) benign(0.015) TCGA-91-6831-01 2 91843493 91843493 G A AC027612.6 RNA 0.08 TCGA-91-6831-01 2 95539718 95539718 G C TEKT4 Missense_Mutation p.R193P 0.06 deleterious(0) probably_damaging(0.99) TCGA-91-6831-01 3 113563456 113563456 G T GRAMD1C Missense_Mutation p.G45V 0.17 tolerated_low_confidence(0.12) benign(0.017) TCGA-91-6831-01 3 124418854 124418854 C T AC080008.1 5'Flank 0.19 TCGA-91-6831-01 3 150384584 150384584 G T FAM194A Missense_Mutation p.T573N 0.24 deleterious(0) probably_damaging(0.939) TCGA-91-6831-01 3 151176394 151176394 C A IGSF10 Missense_Mutation p.C35F 0.35 deleterious(0) probably_damaging(0.999) TCGA-91-6831-01 3 158527041 158527041 C T MFSD1 Silent p.L221L 0.14 TCGA-91-6831-01 3 164760926 164760926 G C SI Missense_Mutation p.T642R 0.48 deleterious(0) probably_damaging(0.99) TCGA-91-6831-01 3 170108188 170108188 G T SKIL Missense_Mutation p.R536I 0.30 deleterious(0.01) benign(0.299) TCGA-91-6831-01 3 184052638 184052638 C T EIF4G1 Missense_Mutation p.S1588F 0.16 deleterious(0.01) probably_damaging(1) TCGA-91-6831-01 3 185797643 185797643 T G ETV5 Missense_Mutation p.K205Q 0.10 tolerated(0.38) benign(0.005) TCGA-91-6831-01 3 186299186 186299186 G A DNAJB11 Silent p.R161R 0.22 TCGA-91-6831-01 3 193188773 193188773 T A ATP13A4 Missense_Mutation p.Q273L 0.25 deleterious(0.01) benign(0.243) TCGA-91-6831-01 3 193210950 193210950 C A ATP13A4 Splice_Site p.X128_splice 0.30 TCGA-91-6831-01 3 195937568 195937568 C A ZDHHC19 Missense_Mutation p.V63F 0.19 deleterious(0.01) benign(0.235) TCGA-91-6831-01 3 38287589 38287589 G T OXSR1 Silent p.V378V 0.46 TCGA-91-6831-01 3 4458925 4458925 G C SUMF1 Missense_Mutation p.L243V 0.52 deleterious(0.01) possibly_damaging(0.529) TCGA-91-6831-01 3 53262099 53262099 A T TKT Missense_Mutation p.L524M 0.38 deleterious(0.02) possibly_damaging(0.884) TCGA-91-6831-01 3 53760942 53760942 G T CACNA1D Missense_Mutation p.D733Y 0.15 deleterious(0.04) probably_damaging(1) TCGA-91-6831-01 4 126241071 126241071 C T FAT4 Missense_Mutation p.R1169W 0.45 possibly_damaging(0.901) TCGA-91-6831-01 4 126412622 126412622 A G FAT4 Missense_Mutation p.D4882G 0.06 probably_damaging(0.995) TCGA-91-6831-01 4 17616296 17616296 G T MED28 Missense_Mutation p.G7C 0.18 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-91-6831-01 4 185678833 185678833 T C ACSL1 Missense_Mutation p.M638V 0.50 deleterious(0.02) benign(0.012) TCGA-91-6831-01 4 38829311 38829311 A C TLR6 Missense_Mutation p.M595R 0.11 deleterious(0.01) benign(0.163) TCGA-91-6831-01 4 48384770 48384770 C T SLAIN2 Missense_Mutation p.P350S 0.07 deleterious(0) probably_damaging(0.998) TCGA-91-6831-01 4 54327665 54327665 T C LNX1 Missense_Mutation p.N663S 0.18 deleterious(0.04) possibly_damaging(0.626) TCGA-91-6831-01 4 5461853 5461853 C T STK32B Silent p.S269S 0.25 TCGA-91-6831-01 4 66218804 66218804 C A EPHA5 Missense_Mutation p.V752L 0.41 tolerated(0.17) benign(0.108) TCGA-91-6831-01 5 11236919 11236919 C A CTNND2 Missense_Mutation p.D549Y 0.41 deleterious(0) probably_damaging(0.957) TCGA-91-6831-01 5 1232411 1232411 C A SLC6A18 Missense_Mutation p.Q80K 0.39 deleterious(0) probably_damaging(0.996) TCGA-91-6831-01 5 123980150 123980150 G C ZNF608 Missense_Mutation p.Q1304E 0.18 tolerated(0.56) benign(0.165) TCGA-91-6831-01 5 127704944 127704944 C T FBN2 Missense_Mutation p.E727K 0.31 deleterious(0.02) probably_damaging(0.99) TCGA-91-6831-01 5 137727539 137727539 A T KDM3B Missense_Mutation p.T740S 0.27 deleterious_low_confidence(0.01) probably_damaging(0.97) TCGA-91-6831-01 5 140166206 140166206 G A PCDHA1 Missense_Mutation p.D111N 0.49 deleterious_low_confidence(0.02) benign(0.371) TCGA-91-6831-01 5 140237382 140237382 G A PCDHA10 Silent p.S583S 0.07 TCGA-91-6831-01 5 140503277 140503277 A G PCDHB4 Missense_Mutation p.N566S 0.14 deleterious(0) benign(0.196) TCGA-91-6831-01 5 140515983 140515983 G T PCDHB5 Missense_Mutation p.G323C 0.17 deleterious_low_confidence(0) possibly_damaging(0.744) TCGA-91-6831-01 5 140559014 140559014 C G PCDHB8 Missense_Mutation p.P467A 0.04 deleterious_low_confidence(0) possibly_damaging(0.811) TCGA-91-6831-01 5 140616204 140616204 C A PCDHB18 RNA 0.39 TCGA-91-6831-01 5 154394083 154394083 C A KIF4B Missense_Mutation p.Q222K 0.22 deleterious(0.05) benign(0.279) TCGA-91-6831-01 5 154396412 154396412 A T KIF4B Missense_Mutation p.Q998L 0.30 deleterious(0.03) benign(0.14) TCGA-91-6831-01 5 169494560 169494560 C A DOCK2 Missense_Mutation p.A1505D 0.13 deleterious(0) possibly_damaging(0.63) TCGA-91-6831-01 5 169673169 169673169 G C C5orf58 3'UTR 0.17 TCGA-91-6831-01 5 175717846 175717847 CA T SIMC1 Intron 0.18 TCGA-91-6831-01 5 180335652 180335652 C G BTNL8 Missense_Mutation p.S39C 0.28 deleterious(0.02) probably_damaging(0.989) TCGA-91-6831-01 5 21802463 21802463 G T CDH12 Missense_Mutation p.H357N 0.23 deleterious(0.02) benign(0.022) TCGA-91-6831-01 5 24488183 24488183 G T CDH10 Missense_Mutation p.D652E 0.31 tolerated(1) probably_damaging(0.983) TCGA-91-6831-01 5 33549428 33549428 C A ADAMTS12 Missense_Mutation p.D1396Y 0.45 deleterious(0) probably_damaging(0.954) TCGA-91-6831-01 5 3601123 3601123 C G IRX1 Missense_Mutation p.P471R 0.27 deleterious(0.01) probably_damaging(0.993) TCGA-91-6831-01 5 38448410 38448410 A T EGFLAM Silent p.I832I 0.20 TCGA-91-6831-01 5 40976868 40976868 G T C7 Missense_Mutation p.Q697H 0.09 tolerated(0.12) benign(0.005) TCGA-91-6831-01 5 72798404 72798404 A G BTF3 Missense_Mutation p.N98S 0.29 tolerated(0.11) benign(0.192) TCGA-91-6831-01 5 76029084 76029084 C A F2R Missense_Mutation p.T345N 0.25 tolerated(0.35) benign(0.016) TCGA-91-6831-01 5 86703889 86703889 T C CCNH Missense_Mutation p.I143M 0.21 deleterious(0) probably_damaging(0.996) TCGA-91-6831-01 6 107035708 107035708 C A RTN4IP1 Missense_Mutation p.G279V 0.53 deleterious(0) probably_damaging(0.998) TCGA-91-6831-01 6 112024101 112024101 T A FYN Silent p.V228V 0.49 TCGA-91-6831-01 6 114264527 114264527 C T HDAC2 Missense_Mutation p.D456N 0.45 tolerated(0.07) benign(0.086) TCGA-91-6831-01 6 117629963 117629963 T C ROS1 Missense_Mutation p.D2188G 0.57 deleterious(0.05) possibly_damaging(0.62) TCGA-91-6831-01 6 137814807 137814807 C T OLIG3 Silent p.S167S 0.12 TCGA-91-6831-01 6 15524529 15524529 A G DTNBP1 Intron 0.16 TCGA-91-6831-01 6 27368575 27368575 T C ZNF391 Silent p.C142C 0.14 TCGA-91-6831-01 6 30676135 30676135 C A MDC1 Splice_Site p.X741_splice 0.57 TCGA-91-6831-01 6 33156836 33156836 C - COL11A2 Frame_Shift_Del p.R121Pfs*24 0.35 TCGA-91-6831-01 6 33264242 33264242 C A RGL2 Splice_Site p.X140_splice 0.48 TCGA-91-6831-01 6 33290711 33290711 C T DAXX 5'UTR 0.40 TCGA-91-6831-01 6 39513450 39513450 A T KIF6 Missense_Mutation p.I399K 0.06 deleterious(0) benign(0.288) TCGA-91-6831-01 6 43323188 43323188 G A ZNF318 Silent p.S628S 0.52 TCGA-91-6831-01 6 43607850 43607850 C T MAD2L1BP Silent p.L167L 0.21 TCGA-91-6831-01 6 46684773 46684773 G A PLA2G7 Missense_Mutation p.P57L 0.22 deleterious(0) probably_damaging(1) TCGA-91-6831-01 6 56485224 56485224 A G DST Intron 0.17 TCGA-91-6831-01 6 6266993 6266993 G C F13A1 Silent p.V123V 0.07 TCGA-91-6831-01 6 88229941 88229941 C G RARS2 Missense_Mutation p.V357L 0.05 tolerated(1) benign(0.006) TCGA-91-6831-01 6 90045059 90045059 G T UBE2J1 Missense_Mutation p.Q174K 0.39 tolerated(1) benign(0.001) TCGA-91-6831-01 7 100395402 100395402 A G ZAN 3'UTR 0.30 TCGA-91-6831-01 7 100680675 100680675 G C MUC17 Missense_Mutation p.S1993T 0.35 possibly_damaging(0.833) TCGA-91-6831-01 7 100685025 100685025 C T MUC17 Missense_Mutation p.A3443V 0.19 benign(0.007) TCGA-91-6831-01 7 103215998 103215998 T C RELN Missense_Mutation p.T1434A 0.47 tolerated(0.09) benign(0.027) TCGA-91-6831-01 7 107591767 107591767 A G LAMB1 Missense_Mutation p.F1099L 0.16 tolerated(0.12) benign(0.029) TCGA-91-6831-01 7 107703285 107703285 G T LAMB4 Silent p.V1072V 0.19 TCGA-91-6831-01 7 115624558 115624558 G A TFEC 5'UTR 0.37 TCGA-91-6831-01 7 120655845 120655845 G A CPED1 Missense_Mutation p.V126I 0.18 tolerated(0.07) probably_damaging(0.987) TCGA-91-6831-01 7 12683870 12683870 G A SCIN Silent p.E563E 0.19 TCGA-91-6831-01 7 130020359 130020359 A G CPA1 5'UTR 0.42 TCGA-91-6831-01 7 136699767 136699768 - C CHRM2 Frame_Shift_Ins p.H53Pfs*17 0.31 TCGA-91-6831-01 7 14378177 14378177 G C DGKB Silent p.T696T 0.41 TCGA-91-6831-01 7 148978639 148978639 G T ZNF783 Missense_Mutation p.E282D 0.36 tolerated(0.07) benign(0.01) TCGA-91-6831-01 7 158334236 158334236 C A PTPRN2 Intron 0.42 TCGA-91-6831-01 7 2645525 2645525 C T IQCE Missense_Mutation p.R587C 0.11 tolerated(0.27) benign(0.005) TCGA-91-6831-01 7 30963182 30963182 G A AQP1 Missense_Mutation p.V250M 0.39 tolerated(0.17) benign(0.076) TCGA-91-6831-01 7 31829844 31829844 G T PDE1C Intron 0.27 TCGA-91-6831-01 7 4949536 4949536 G C MMD2 Missense_Mutation p.F195L 0.38 tolerated(0.92) benign(0.004) TCGA-91-6831-01 7 94024394 94024394 A - COL1A2 Frame_Shift_Del p.L17Ffs*3 0.15 TCGA-91-6831-01 8 10583302 10583302 G C SOX7 Missense_Mutation p.I423M 0.26 deleterious(0) probably_damaging(0.998) TCGA-91-6831-01 8 110460608 110460608 A T PKHD1L1 Missense_Mutation p.N2005Y 0.36 tolerated(0.9) benign(0.002) TCGA-91-6831-01 8 113256788 113256788 G T CSMD3 Missense_Mutation p.Q3413K 0.27 deleterious(0) probably_damaging(0.932) TCGA-91-6831-01 8 113323386 113323386 C T CSMD3 Missense_Mutation p.C2569Y 0.34 deleterious(0) probably_damaging(0.986) TCGA-91-6831-01 8 113363403 113363403 C T CSMD3 Splice_Site p.X2109_splice 0.23 TCGA-91-6831-01 8 124658213 124658213 A T KLHL38 Nonsense_Mutation p.C504* 0.07 TCGA-91-6831-01 8 133051267 133051267 G T OC90 Silent p.T187T 0.25 TCGA-91-6831-01 8 133637538 133637538 C T LRRC6 Silent p.R272R 0.22 TCGA-91-6831-01 8 133948035 133948035 G A TG Missense_Mutation p.S1656N 0.12 tolerated(0.16) benign(0.221) TCGA-91-6831-01 8 143958272 143958272 G T CYP11B1 Missense_Mutation p.L209M 0.18 tolerated(0.06) probably_damaging(0.999) TCGA-91-6831-01 8 145642092 145642092 G T SLC39A4 Missense_Mutation p.L28M 0.09 deleterious(0.02) benign(0.409) TCGA-91-6831-01 8 145651592 145651592 C A VPS28 Splice_Site p.X13_splice 0.58 TCGA-91-6831-01 8 28206337 28206337 C A ZNF395 Missense_Mutation p.G481W 0.44 deleterious(0) probably_damaging(1) TCGA-91-6831-01 8 2949101 2949101 A T CSMD1 Missense_Mutation p.L2408I 0.12 benign(0.247) TCGA-91-6831-01 8 33449609 33449609 T C DUSP26 Silent p.R186R 0.31 TCGA-91-6831-01 8 3474272 3474272 C A CSMD1 Missense_Mutation p.G353W 0.27 probably_damaging(0.954) TCGA-91-6831-01 8 51465646 51465646 C A SNTG1 Silent p.V239V 0.20 TCGA-91-6831-01 8 61471410 61471410 G C RAB2A Splice_Site p.X16_splice 0.07 TCGA-91-6831-01 8 68208794 68208794 C A ARFGEF1 Missense_Mutation p.V171L 0.27 tolerated(1) benign(0.007) TCGA-91-6831-01 8 75926293 75926293 G T CRISPLD1 Missense_Mutation p.Q194H 0.42 deleterious(0.03) possibly_damaging(0.811) TCGA-91-6831-01 8 77895569 77895569 C A PEX2 Missense_Mutation p.K282N 0.30 deleterious(0.03) possibly_damaging(0.58) TCGA-91-6831-01 8 8235375 8235377 AGC T SGK223 Frame_Shift_Del p.S181Nfs*56 0.49 TCGA-91-6831-01 8 87060894 87060894 A C PSKH2 Missense_Mutation p.W319G 0.11 deleterious(0) probably_damaging(0.998) TCGA-91-6831-01 8 87899795 87899795 T G CNBD1 Missense_Mutation p.N38K 0.19 deleterious(0.01) possibly_damaging(0.541) TCGA-91-6831-01 8 95262661 95262661 C A GEM Missense_Mutation p.Q256H 0.07 tolerated(0.54) benign(0.208) TCGA-91-6831-01 9 100693073 100693073 G T HEMGN Missense_Mutation p.P202T 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-91-6831-01 9 104190767 104190770 TTTG - ALDOB Frame_Shift_Del p.N120Kfs*32 0.39 TCGA-91-6831-01 9 112899608 112899608 C G PALM2-AKAP2 Nonsense_Mutation p.S595* 0.58 TCGA-91-6831-01 9 112900057 112900057 C T PALM2-AKAP2 Nonsense_Mutation p.Q745* 0.54 TCGA-91-6831-01 9 139252516 139252517 GG C GPSM1 Frame_Shift_Del p.G625Afs*164 0.18 TCGA-91-6831-01 9 21187301 21187301 A T IFNA4 Missense_Mutation p.I77N 0.04 deleterious(0.01) benign(0.369) TCGA-91-6831-01 9 35738882 35738882 C T GBA2 Missense_Mutation p.R605H 0.07 tolerated(0.1) possibly_damaging(0.534) TCGA-91-6831-01 9 70917832 70917832 C T FOXD4L3 5'UTR 0.11 TCGA-91-6831-01 9 79325382 79325382 T - PRUNE2 Frame_Shift_Del p.N603Ifs*11 0.17 TCGA-91-6831-01 9 85958123 85958123 C A FRMD3 Missense_Mutation p.G152C 0.36 deleterious(0.01) probably_damaging(0.99) TCGA-91-6831-01 X 100349972 100349972 T C TMEM35 3'UTR 0.62 TCGA-91-6831-01 X 118112341 118112341 C G LONRF3 Missense_Mutation p.S284C 0.66 deleterious(0) probably_damaging(1) TCGA-91-6831-01 X 119053913 119053913 G T AKAP14 Missense_Mutation p.A161S 0.67 tolerated(1) benign(0.009) TCGA-91-6831-01 X 130222789 130222789 G - ARHGAP36 3'UTR 0.42 TCGA-91-6831-01 X 19031915 19031915 G C GPR64 Missense_Mutation p.P330A 0.69 deleterious(0.04) benign(0.009) TCGA-91-6831-01 X 21624935 21624935 C T CNKSR2 Missense_Mutation p.P695S 0.59 tolerated(1) benign(0.041) TCGA-91-6831-01 X 30260394 30260394 G A MAGEB4 Missense_Mutation p.D48N 0.63 tolerated(0.28) benign(0.275) TCGA-91-6831-01 X 41088852 41088852 G T USP9X Missense_Mutation p.W2417C 0.58 tolerated(0.18) probably_damaging(0.982) TCGA-91-6831-01 X 48460278 48460278 A G WDR13 Missense_Mutation p.D313G 0.53 deleterious(0.01) possibly_damaging(0.77) TCGA-91-6831-01 X 53409448 53409448 C A SMC1A Silent p.L1088L 0.55 TCGA-91-6831-01 X 57020669 57020669 C G SPIN3 Missense_Mutation p.V238L 0.64 deleterious(0.04) possibly_damaging(0.648) TCGA-91-6835-01 10 105363225 105363225 T A SH3PXD2A Missense_Mutation p.R556W 0.07 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-91-6835-01 10 118969399 118969399 G A KCNK18 Silent p.E248E 0.05 TCGA-91-6835-01 10 5014469 5014469 A G AKR1C1 Missense_Mutation p.Y216C 0.09 deleterious(0) probably_damaging(0.996) TCGA-91-6835-01 11 48347118 48347118 T G OR4C3 Missense_Mutation p.L209W 0.12 deleterious(0) probably_damaging(1) TCGA-91-6835-01 11 61257980 61257980 A G PPP1R32 Missense_Mutation p.T406A 0.03 tolerated(0.67) benign(0.005) TCGA-91-6835-01 11 64878173 64878173 A C VPS51 Missense_Mutation p.M670L 0.10 tolerated(0.71) benign(0.001) TCGA-91-6835-01 11 73849825 73849825 T A C2CD3 Missense_Mutation p.S299C 0.09 deleterious(0) probably_damaging(0.959) TCGA-91-6835-01 11 85961365 85961365 A G EED Missense_Mutation p.T48A 0.08 tolerated(0.25) benign(0.001) TCGA-91-6835-01 12 10525829 10525829 G T KLRK1 Missense_Mutation p.L179I 0.12 tolerated(0.12) benign(0.058) TCGA-91-6835-01 12 106824084 106824084 C G POLR3B Missense_Mutation p.R433G 0.14 deleterious(0.01) probably_damaging(0.988) TCGA-91-6835-01 12 463298 463298 G A KDM5A Missense_Mutation p.P325S 0.10 deleterious(0) probably_damaging(0.996) TCGA-91-6835-01 12 49088166 49088166 C A CCNT1 Missense_Mutation p.K277N 0.06 tolerated(0.63) benign(0) TCGA-91-6835-01 12 52862852 52862852 C T KRT6C Silent p.K563K 0.09 TCGA-91-6835-01 12 53169354 53169354 C T KRT76 Silent p.L211L 0.06 TCGA-91-6835-01 12 53552175 53552175 C A CSAD 3'UTR 0.30 TCGA-91-6835-01 12 9346702 9346702 T A PZP Missense_Mutation p.S409C 0.09 deleterious(0.01) benign(0.103) TCGA-91-6835-01 13 61987635 61987635 G A PCDH20 Silent p.I199I 0.09 TCGA-91-6835-01 14 107012950 107012950 A G IGHV3-49 Silent p.Y115Y 0.07 TCGA-91-6835-01 14 22102425 22102425 G A OR10G2 Silent p.L192L 0.13 TCGA-91-6835-01 14 23859465 23859465 C A MYH6 Missense_Mutation p.R1178L 0.14 deleterious(0) probably_damaging(1) TCGA-91-6835-01 14 50667775 50667775 G A SOS2 Missense_Mutation p.P81S 0.07 deleterious(0) probably_damaging(0.999) TCGA-91-6835-01 14 73989316 73989316 G C HEATR4 Missense_Mutation p.L181V 0.21 tolerated(0.11) benign(0.021) TCGA-91-6835-01 14 90430011 90430011 A G TDP1 Missense_Mutation p.I185V 0.05 deleterious(0.02) possibly_damaging(0.513) TCGA-91-6835-01 15 22382756 22382756 G T OR4N4 Missense_Mutation p.R95I 0.05 tolerated(0.18) benign(0.288) TCGA-91-6835-01 15 90213396 90213396 G T PLIN1 Missense_Mutation p.T138N 0.20 deleterious(0) probably_damaging(0.999) TCGA-91-6835-01 16 24909301 24909301 G T SLC5A11 Missense_Mutation p.V293F 0.15 deleterious(0) probably_damaging(0.998) TCGA-91-6835-01 16 27840114 27840114 C A GSG1L Nonsense_Mutation p.E276* 0.21 TCGA-91-6835-01 16 2814127 2814127 C A SRRM2 Missense_Mutation p.L1200M 0.06 unknown(0) TCGA-91-6835-01 16 33020775 33020775 G T IGHV3OR16-8 Silent p.G61G 0.03 TCGA-91-6835-01 17 10216590 10216590 C T MYH13 Missense_Mutation p.E1356K 0.09 deleterious(0.01) benign(0.371) TCGA-91-6835-01 17 14110404 14110404 C T COX10 Silent p.D402D 0.07 TCGA-91-6835-01 17 15935793 15935793 T G NCOR1 Silent p.S2380S 0.05 TCGA-91-6835-01 17 18052870 18052870 C T MYO15A Silent p.D2396D 0.08 TCGA-91-6835-01 17 26905478 26905478 G A SPAG5 Silent p.L1089L 0.06 TCGA-91-6835-01 17 29528174 29528174 T C NF1 Silent p.F394F 0.16 TCGA-91-6835-01 17 40490754 40490754 T C STAT3 Missense_Mutation p.Q182R 0.25 tolerated(1) benign(0.002) TCGA-91-6835-01 17 4798435 4798435 G T MINK1 Missense_Mutation p.V995F 0.04 deleterious(0) probably_damaging(0.996) TCGA-91-6835-01 17 64684503 64684503 G T PRKCA Missense_Mutation p.G257V 0.12 deleterious(0.02) probably_damaging(0.982) TCGA-91-6835-01 17 7480995 7480995 C G EIF4A1 Missense_Mutation p.H293D 0.07 tolerated(0.07) benign(0.177) TCGA-91-6835-01 18 22932064 22932064 G T ZNF521 5'UTR 0.07 TCGA-91-6835-01 18 33785085 33785085 A G MOCOS Missense_Mutation p.Y355C 0.13 deleterious(0) probably_damaging(0.949) TCGA-91-6835-01 18 60241580 60241580 G T ZCCHC2 Missense_Mutation p.V756F 0.05 tolerated(0.1) possibly_damaging(0.548) TCGA-91-6835-01 18 60241581 60241581 T C ZCCHC2 Missense_Mutation p.V756A 0.05 tolerated(0.17) benign(0.257) TCGA-91-6835-01 18 72775115 72775115 C G ZNF407 Missense_Mutation p.S1813C 0.05 deleterious(0) probably_damaging(0.997) TCGA-91-6835-01 18 74587576 74587576 C T ZNF236 Nonsense_Mutation p.Q264* 0.08 TCGA-91-6835-01 19 33424561 33424561 C T CEP89 Missense_Mutation p.A228T 0.06 tolerated(0.5) benign(0.004) TCGA-91-6835-01 19 35612163 35612163 C G FXYD3 Intron 0.04 TCGA-91-6835-01 19 40196515 40196515 A G LGALS14 5'UTR 0.28 TCGA-91-6835-01 19 41704794 41704794 G T CYP2S1 Splice_Site p.X278_splice 0.20 TCGA-91-6835-01 19 43523198 43523198 C A PSG11 Nonsense_Mutation p.E145* 0.09 TCGA-91-6835-01 19 47422502 47422502 A T ARHGAP35 Missense_Mutation p.K190N 0.05 deleterious(0) probably_damaging(0.996) TCGA-91-6835-01 19 55333080 55333080 G A KIR3DL1 Missense_Mutation p.S239N 0.05 tolerated(1) benign(0) TCGA-91-6835-01 19 9088564 9088564 G T MUC16 Missense_Mutation p.P1084Q 0.19 unknown(0) TCGA-91-6835-01 1 110294652 110294652 G A EPS8L3 Missense_Mutation p.R468W 0.14 deleterious(0) possibly_damaging(0.799) TCGA-91-6835-01 1 152275136 152275136 A G FLG 3'UTR 0.12 TCGA-91-6835-01 1 152944414 152944414 G T SPRR4 Missense_Mutation p.Q16H 0.05 tolerated_low_confidence(0.11) unknown(0) TCGA-91-6835-01 1 153748206 153748206 G A SLC27A3 Missense_Mutation p.R125H 0.45 tolerated(0.1) benign(0.12) TCGA-91-6835-01 1 154989004 154989004 A G ZBTB7B Missense_Mutation p.N522S 0.07 tolerated_low_confidence(0.24) possibly_damaging(0.801) TCGA-91-6835-01 1 158325668 158325668 T A CD1E Missense_Mutation p.L226Q 0.22 tolerated(0.07) possibly_damaging(0.559) TCGA-91-6835-01 1 175324639 175324639 C A TNR Missense_Mutation p.K1083N 0.05 deleterious(0) probably_damaging(1) TCGA-91-6835-01 1 180062865 180062865 A G CEP350 Missense_Mutation p.Y2542C 0.08 probably_damaging(1) TCGA-91-6835-01 1 19609317 19609317 C G AKR7A3 Missense_Mutation p.A302P 0.09 tolerated(0.09) possibly_damaging(0.553) TCGA-91-6835-01 1 201437488 201437488 G C PHLDA3 3'UTR 0.08 TCGA-91-6835-01 1 201437501 201437501 G C PHLDA3 3'UTR 0.07 TCGA-91-6835-01 1 226048664 226048664 C G TMEM63A Missense_Mutation p.Q373H 0.05 tolerated(0.1) possibly_damaging(0.878) TCGA-91-6835-01 1 235850271 235850271 G T LYST Missense_Mutation p.T3593K 0.08 deleterious(0.03) benign(0.03) TCGA-91-6835-01 1 52828382 52828382 G C CC2D1B Missense_Mutation p.L36V 0.05 tolerated(0.09) benign(0.008) TCGA-91-6835-01 20 60904066 60904066 G C LAMA5 Silent p.L1427L 0.12 TCGA-91-6835-01 22 22707673 22707673 C G IGLV5-48 Missense_Mutation p.F87L 0.10 deleterious(0.04) benign(0.323) TCGA-91-6835-01 22 35728979 35728979 A G TOM1 Missense_Mutation p.E302G 0.06 deleterious(0.01) probably_damaging(0.984) TCGA-91-6835-01 22 43996129 43996129 C A EFCAB6 Missense_Mutation p.G899V 0.19 deleterious(0) probably_damaging(0.997) TCGA-91-6835-01 2 113260740 113260740 A G TTL Missense_Mutation p.Q286R 0.12 deleterious(0) probably_damaging(1) TCGA-91-6835-01 2 161223815 161223815 C A RBMS1 Nonsense_Mutation p.G55* 0.09 TCGA-91-6835-01 2 173344444 173344444 G A ITGA6 Silent p.A488A 0.11 TCGA-91-6835-01 2 211179669 211179670 GG T MYL1 Frame_Shift_Del p.P33Tfs*40 0.14 TCGA-91-6835-01 2 74605276 74605276 C G DCTN1 Missense_Mutation p.V44L 0.09 deleterious(0.01) probably_damaging(0.991) TCGA-91-6835-01 3 123633720 123633720 C A CCDC14 Missense_Mutation p.R882L 0.15 deleterious(0.03) benign(0.001) TCGA-91-6835-01 3 16411656 16411656 T C RFTN1 Silent p.L319L 0.15 TCGA-91-6835-01 3 49335338 49335338 A T USP4 Silent p.G552G 0.14 TCGA-91-6835-01 3 96533506 96533506 G T EPHA6 Silent p.P13P 0.13 TCGA-91-6835-01 4 106967751 106967751 G A TBCK Silent p.L886L 0.10 TCGA-91-6835-01 4 155505244 155505245 - GAAGACAGAGTGCTCCCATTCCCACTTC FGA 3'UTR 0.22 TCGA-91-6835-01 4 159572994 159572994 A T RXFP1 Silent p.P687P 0.12 TCGA-91-6835-01 4 185552921 185552921 G A CASP3 Nonsense_Mutation p.Q161* 0.08 TCGA-91-6835-01 4 69431416 69431416 C A UGT2B17 Missense_Mutation p.E249D 0.07 tolerated(0.06) possibly_damaging(0.503) TCGA-91-6835-01 4 69431418 69431418 C T UGT2B17 Missense_Mutation p.E249K 0.07 deleterious(0.02) possibly_damaging(0.742) TCGA-91-6835-01 4 71510435 71510435 G C ENAM Missense_Mutation p.E1098Q 0.07 tolerated(0.17) possibly_damaging(0.747) TCGA-91-6835-01 5 140772817 140772817 C T PCDHGA8 Missense_Mutation p.A146V 0.05 tolerated_low_confidence(0.11) possibly_damaging(0.551) TCGA-91-6835-01 5 154396603 154396603 G T KIF4B Missense_Mutation p.G1062C 0.16 tolerated(0.06) benign(0.293) TCGA-91-6835-01 5 24488011 24488011 C T CDH10 Missense_Mutation p.V710I 0.10 tolerated(0.28) probably_damaging(0.939) TCGA-91-6835-01 5 31316327 31316327 A G CDH6 Missense_Mutation p.Q468R 0.10 tolerated(0.09) benign(0.142) TCGA-91-6835-01 6 109764084 109764084 C T SMPD2 Silent p.F207F 0.15 TCGA-91-6835-01 6 33260318 33260318 T C RGL2 Missense_Mutation p.T671A 0.09 deleterious(0) probably_damaging(0.987) TCGA-91-6835-01 6 56504285 56504285 C G DST Missense_Mutation p.R404T 0.15 probably_damaging(0.996) TCGA-91-6835-01 6 80198869 80198869 C G LCA5 Missense_Mutation p.R388T 0.15 deleterious(0.05) benign(0.015) TCGA-91-6835-01 7 100732051 100732051 C G TRIM56 Silent p.G486G 0.05 TCGA-91-6835-01 7 107600230 107600230 G A LAMB1 Silent p.N788N 0.09 TCGA-91-6835-01 7 11464415 11464415 G C THSD7A Nonsense_Mutation p.Y1097* 0.07 TCGA-91-6835-01 7 138943367 138943367 C T UBN2 Missense_Mutation p.P266L 0.07 tolerated(0.07) benign(0.003) TCGA-91-6835-01 7 18066750 18066750 A G PRPS1L1 Missense_Mutation p.V219A 0.17 deleterious(0) probably_damaging(0.974) TCGA-91-6835-01 7 44157303 44157303 T A POLD2 Silent p.I127I 0.17 TCGA-91-6835-01 7 55259515 55259515 T G EGFR Missense_Mutation p.L858R 0.10 deleterious(0) probably_damaging(1) TCGA-91-6835-01 7 55750500 55750500 C T RNU6-389P 5'Flank 0.17 TCGA-91-6835-01 8 113585738 113585738 A G CSMD3 Missense_Mutation p.V1345A 0.13 tolerated(0.5) benign(0.085) TCGA-91-6835-01 8 124664241 124664241 G T KLHL38 Missense_Mutation p.T309N 0.11 deleterious(0.03) benign(0.013) TCGA-91-6835-01 8 13251147 13251147 C A DLC1 Missense_Mutation p.R410L 0.08 tolerated_low_confidence(0.14) benign(0) TCGA-91-6835-01 8 13251148 13251148 G A DLC1 Nonsense_Mutation p.R410* 0.10 TCGA-91-6835-01 8 62289213 62289213 C T CLVS1 Silent p.L169L 0.15 TCGA-91-6835-01 9 123007316 123007316 T A MIR147A RNA 0.09 TCGA-91-6835-01 9 127969979 127969979 G T RABEPK Missense_Mutation p.D64Y 0.22 deleterious(0) probably_damaging(0.982) TCGA-91-6835-01 9 135205442 135205442 T G SETX Missense_Mutation p.T515P 0.08 tolerated(0.11) benign(0.137) TCGA-91-6835-01 9 35102814 35102814 G A STOML2 Silent p.L18L 0.07 TCGA-91-6835-01 X 144337280 144337280 C T SPANXN1 Silent p.C55C 0.08 TCGA-91-6835-01 X 24228471 24228471 A G ZFX Missense_Mutation p.N466D 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-91-6835-01 X 73066244 73066244 G A XIST RNA 0.13 TCGA-91-6836-01 10 108378025 108378025 C A SORCS1 Missense_Mutation p.L934F 0.21 deleterious(0.05) benign(0.043) TCGA-91-6836-01 10 108439445 108439445 G T SORCS1 Nonsense_Mutation p.Y536* 0.42 TCGA-91-6836-01 10 118969098 118969098 T A KCNK18 Missense_Mutation p.L148H 0.51 deleterious(0) probably_damaging(0.997) TCGA-91-6836-01 10 119044270 119044270 G A PDZD8 Silent p.A658A 0.45 TCGA-91-6836-01 10 17363151 17363152 - A ST8SIA6 Frame_Shift_Ins p.A308Vfs*7 0.28 TCGA-91-6836-01 10 17369045 17369045 T A ST8SIA6 Silent p.G201G 0.46 TCGA-91-6836-01 10 18948534 18948534 C T ARL5B 5'UTR 0.60 TCGA-91-6836-01 10 23235080 23235080 C A ARMC3 Missense_Mutation p.P19Q 0.51 deleterious(0.01) probably_damaging(0.97) TCGA-91-6836-01 10 27389139 27389139 G T ANKRD26 Silent p.G39G 0.28 TCGA-91-6836-01 10 27412554 27412554 G A YME1L1 Missense_Mutation p.P399S 0.29 deleterious(0) probably_damaging(1) TCGA-91-6836-01 10 29820930 29820930 C T SVIL Splice_Site p.X670_splice 0.27 TCGA-91-6836-01 10 30915125 30915125 G T LYZL2 Missense_Mutation p.S115R 0.39 deleterious(0) probably_damaging(1) TCGA-91-6836-01 10 32096561 32096561 T C ARHGAP12 3'UTR 0.17 TCGA-91-6836-01 10 43089515 43089515 C A ZNF33B Missense_Mutation p.G295W 0.19 deleterious(0.02) possibly_damaging(0.882) TCGA-91-6836-01 10 47919965 47919965 G T FAM21B Silent p.A465A 0.85 TCGA-91-6836-01 10 50121436 50121436 C T LRRC18 Splice_Site p.X255_splice 0.28 TCGA-91-6836-01 10 50732718 50732718 G C ERCC6-PGBD3 Missense_Mutation p.P253R 0.19 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-91-6836-01 10 64950684 64950684 G C JMJD1C Silent p.A2087A 0.15 TCGA-91-6836-01 10 72291202 72291202 C T PALD1 Missense_Mutation p.R209W 0.48 deleterious(0) probably_damaging(0.988) TCGA-91-6836-01 10 76784718 76784718 G T KAT6B Missense_Mutation p.R1125S 0.18 possibly_damaging(0.884) TCGA-91-6836-01 10 79784767 79784767 C A POLR3A Missense_Mutation p.R151L 0.45 deleterious(0) possibly_damaging(0.87) TCGA-91-6836-01 10 85984284 85984284 C A LRIT2 Missense_Mutation p.G233C 0.25 deleterious(0) possibly_damaging(0.841) TCGA-91-6836-01 10 89118066 89118066 T A NUTM2D Nonsense_Mutation p.L15* 0.13 TCGA-91-6836-01 10 89574407 89574407 T A ATAD1 Intron 0.33 TCGA-91-6836-01 11 107521059 107521059 A G ELMOD1 Splice_Site p.X185_splice 0.88 TCGA-91-6836-01 11 11373607 11373607 C T CSNK2A3 Missense_Mutation p.G354R 0.33 tolerated_low_confidence(0.06) probably_damaging(0.964) TCGA-91-6836-01 11 123778066 123778066 T A OR8D4 Missense_Mutation p.S310T 0.81 tolerated(0.12) benign(0.001) TCGA-91-6836-01 11 126081626 126081626 G - FAM118B 5'UTR 0.43 TCGA-91-6836-01 11 132307167 132307167 A C OPCML Missense_Mutation p.L205V 0.65 tolerated(0.44) benign(0.009) TCGA-91-6836-01 11 14101549 14101549 C A SPON1 RNA 0.44 TCGA-91-6836-01 11 18266884 18266884 C A SAA2 3'UTR 0.67 TCGA-91-6836-01 11 2182168 2182168 C A INS-IGF2 Missense_Mutation p.A12S 0.72 deleterious_low_confidence(0.01) unknown(0) TCGA-91-6836-01 11 31112989 31112989 C T DCDC1 Missense_Mutation p.A730T 0.50 tolerated(0.3) benign(0.188) TCGA-91-6836-01 11 40136344 40136344 G T LRRC4C Nonsense_Mutation p.S500* 0.63 TCGA-91-6836-01 11 47826139 47826139 C A NUP160 Nonsense_Mutation p.E880* 0.21 TCGA-91-6836-01 11 49598361 49598361 C G RP11-707M1.1 RNA 0.36 TCGA-91-6836-01 11 51412108 51412108 C A OR4A5 Missense_Mutation p.M96I 0.54 deleterious_low_confidence(0.02) benign(0.027) TCGA-91-6836-01 11 55322787 55322787 C G OR4C15 Silent p.L335L 0.41 TCGA-91-6836-01 11 55606473 55606473 G C OR5D16 Missense_Mutation p.M82I 0.18 deleterious(0) benign(0) TCGA-91-6836-01 11 55658705 55658705 C T TRIM51 Missense_Mutation p.P319L 0.19 deleterious(0.01) probably_damaging(0.964) TCGA-91-6836-01 11 55681482 55681482 G T OR5W2 Missense_Mutation p.Q193K 0.42 deleterious(0.03) benign(0.119) TCGA-91-6836-01 11 56020494 56020494 T A OR5T3 Silent p.S273S 0.19 TCGA-91-6836-01 11 59245288 59245288 C A OR4D10 Missense_Mutation p.P129H 0.45 deleterious(0) probably_damaging(0.98) TCGA-91-6836-01 11 61081429 61081431 CGA AG DDB1 Frame_Shift_Del p.R589Sfs*4 0.36 TCGA-91-6836-01 11 62327811 62327812 - T EEF1G Frame_Shift_Ins p.E325Rfs*6 0.32 TCGA-91-6836-01 11 64521067 64521067 C A PYGM Missense_Mutation p.A443S 0.33 deleterious(0.04) possibly_damaging(0.806) TCGA-91-6836-01 11 64521068 64521068 C T PYGM Missense_Mutation p.M442I 0.33 deleterious(0.01) benign(0.143) TCGA-91-6836-01 11 64574664 64574664 C A MEN1 Nonsense_Mutation p.G276* 0.24 TCGA-91-6836-01 11 64950964 64950964 G T CAPN1 Silent p.A119A 0.46 TCGA-91-6836-01 11 65629749 65629749 G A MUS81 Missense_Mutation p.R173K 0.15 tolerated(1) benign(0.001) TCGA-91-6836-01 11 65827286 65827286 G C SF3B2 Missense_Mutation p.D479H 0.23 deleterious(0) probably_damaging(1) TCGA-91-6836-01 11 76982254 76982254 G T GDPD4 Nonsense_Mutation p.Y107* 0.34 TCGA-91-6836-01 11 89644601 89644601 T A TRIM49D1 3'UTR 0.18 TCGA-91-6836-01 11 93528177 93528177 A T MED17 Missense_Mutation p.Q321H 0.39 tolerated(0.07) possibly_damaging(0.478) TCGA-91-6836-01 12 10151776 10151776 A G CLEC1B 5'UTR 0.60 TCGA-91-6836-01 12 102796285 102796285 C A IGF1 Nonstop_Mutation p.*138Yext*7 0.46 TCGA-91-6836-01 12 104067855 104067855 G T STAB2 Missense_Mutation p.G848W 0.25 deleterious(0) probably_damaging(0.995) TCGA-91-6836-01 12 104380778 104380778 G T TDG Silent p.G381G 0.22 TCGA-91-6836-01 12 11175131 11175131 C T TAS2R19 Missense_Mutation p.V14M 0.56 tolerated(0.9) benign(0.028) TCGA-91-6836-01 12 112638548 112638548 G A HECTD4 Nonsense_Mutation p.R2675* 0.14 TCGA-91-6836-01 12 113737668 113737669 - AT SLC8B1 Frame_Shift_Ins p.G557Mfs*10 0.41 TCGA-91-6836-01 12 123345953 123345953 C G HIP1R Missense_Mutation p.S1017R 0.42 tolerated(0.14) benign(0.017) TCGA-91-6836-01 12 125397360 125397360 C A UBC Nonsense_Mutation p.E320* 0.44 TCGA-91-6836-01 12 130919346 130919346 G T RIMBP2 Missense_Mutation p.S712Y 0.49 deleterious(0) probably_damaging(0.963) TCGA-91-6836-01 12 132497649 132497649 C G EP400 Missense_Mutation p.C1179W 0.27 unknown(0) TCGA-91-6836-01 12 133214603 133214603 C T POLE Missense_Mutation p.S1892N 0.77 tolerated(1) benign(0.001) TCGA-91-6836-01 12 20522729 20522729 G T PDE3A Nonsense_Mutation p.E171* 0.15 TCGA-91-6836-01 12 21788499 21788499 G A LDHB Nonsense_Mutation p.Q328* 0.78 TCGA-91-6836-01 12 21958111 21958111 C A ABCC9 Intron 0.80 TCGA-91-6836-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.80 deleterious(0.02) possibly_damaging(0.773) TCGA-91-6836-01 12 25706005 25706005 G T IFLTD1 Intron 0.75 TCGA-91-6836-01 12 27475461 27475461 C G STK38L 3'UTR 0.76 TCGA-91-6836-01 12 29911708 29911708 C A TMTC1 Silent p.V161V 0.74 TCGA-91-6836-01 12 31540672 31540672 G T DENND5B Silent p.A1230A 0.83 TCGA-91-6836-01 12 31542294 31542294 T C DENND5B Missense_Mutation p.D1202G 0.86 deleterious(0) probably_damaging(0.994) TCGA-91-6836-01 12 34177038 34177038 G T ALG10 Missense_Mutation p.V105F 0.04 deleterious(0.03) possibly_damaging(0.515) TCGA-91-6836-01 12 38712204 38712204 G T ALG10B Missense_Mutation p.V105F 0.42 deleterious(0.03) possibly_damaging(0.515) TCGA-91-6836-01 12 40012821 40012821 C T ABCD2 Missense_Mutation p.M199I 0.46 deleterious(0.01) benign(0.439) TCGA-91-6836-01 12 45567503 45567503 T C PLEKHA8P1 RNA 0.46 TCGA-91-6836-01 12 49432397 49432397 G T KMT2D Missense_Mutation p.H2914Q 0.34 possibly_damaging(0.71) TCGA-91-6836-01 12 50294991 50294991 C G FAIM2 Missense_Mutation p.E45Q 0.24 tolerated(0.45) benign(0.115) TCGA-91-6836-01 12 51589813 51589813 G A POU6F1 Silent p.P63P 0.44 TCGA-91-6836-01 12 51890825 51890825 G T SLC4A8 Nonsense_Mutation p.E1000* 0.36 TCGA-91-6836-01 12 52314696 52314696 C A ACVRL1 3'UTR 0.39 TCGA-91-6836-01 12 52627069 52627069 G T KRT7 5'UTR 0.50 TCGA-91-6836-01 12 54639997 54639997 C A CBX5 Missense_Mutation p.Q109H 0.46 deleterious(0.05) benign(0.02) TCGA-91-6836-01 12 56232336 56232336 G T MMP19 Intron 0.34 TCGA-91-6836-01 12 56740394 56740394 A T STAT2 Missense_Mutation p.Y626N 0.31 tolerated(0.3) benign(0.014) TCGA-91-6836-01 12 57432273 57432273 C A MYO1A Silent p.P561P 0.50 TCGA-91-6836-01 12 57590052 57590052 G C LRP1 Missense_Mutation p.G2962R 0.36 probably_damaging(1) TCGA-91-6836-01 12 57864343 57864343 C T GLI1 Missense_Mutation p.S607F 0.41 deleterious(0.01) benign(0.158) TCGA-91-6836-01 12 70049062 70049062 G A BEST3 Silent p.G544G 0.47 TCGA-91-6836-01 12 72290454 72290454 C T TBC1D15 Intron 0.34 TCGA-91-6836-01 12 7522016 7522016 G T CD163L1 Missense_Mutation p.H1326N 0.57 tolerated(0.09) benign(0.21) TCGA-91-6836-01 12 78400496 78400496 C G NAV3 Missense_Mutation p.A393G 0.28 deleterious(0.02) benign(0.036) TCGA-91-6836-01 12 85521615 85521615 C T LRRIQ1 Missense_Mutation p.A1338V 0.35 deleterious(0) probably_damaging(1) TCGA-91-6836-01 12 88570021 88570021 G T TMTC3 Missense_Mutation p.G453C 0.32 deleterious(0) probably_damaging(0.999) TCGA-91-6836-01 12 93870766 93870766 A T MRPL42 Missense_Mutation p.Y36F 0.30 tolerated(0.09) benign(0.024) TCGA-91-6836-01 12 94542933 94542933 C T PLXNC1 Silent p.G62G 0.34 TCGA-91-6836-01 13 109475515 109475515 C A MYO16 Missense_Mutation p.A307D 0.57 deleterious(0) probably_damaging(0.917) TCGA-91-6836-01 13 31735728 31735728 C A HSPH1 5'UTR 0.50 TCGA-91-6836-01 13 31858870 31858870 G A B3GALTL Silent p.V312V 0.64 TCGA-91-6836-01 13 36909696 36909696 C A SPG20 Missense_Mutation p.R91M 0.62 deleterious(0) probably_damaging(0.993) TCGA-91-6836-01 13 46679112 46679112 G T CPB2 Silent p.P11P 0.59 TCGA-91-6836-01 13 52293449 52293449 A T WDFY2 Silent p.G150G 0.29 TCGA-91-6836-01 13 52439481 52439481 G A CCDC70 5'UTR 0.56 TCGA-91-6836-01 13 52515216 52515216 C A ATP7B Splice_Site p.X1186_splice 0.30 TCGA-91-6836-01 13 79189871 79189871 C T RNF219 Missense_Mutation p.M675I 0.66 tolerated_low_confidence(0.15) benign(0) TCGA-91-6836-01 13 84455038 84455038 G T SLITRK1 Missense_Mutation p.P202H 0.57 tolerated(0.08) possibly_damaging(0.593) TCGA-91-6836-01 14 102483806 102483806 C T DYNC1H1 Silent p.P2714P 0.32 TCGA-91-6836-01 14 105409775 105409775 G A AHNAK2 Missense_Mutation p.P4005S 0.36 probably_damaging(1) TCGA-91-6836-01 14 105413593 105413593 G A AHNAK2 Missense_Mutation p.P2732L 0.33 probably_damaging(0.998) TCGA-91-6836-01 14 19553937 19553937 G T POTEG Missense_Mutation p.R174M 0.19 deleterious(0) possibly_damaging(0.855) TCGA-91-6836-01 14 20295971 20295971 C A OR4N2 Missense_Mutation p.R122S 0.22 deleterious(0) possibly_damaging(0.738) TCGA-91-6836-01 14 21945407 21945407 G T TOX4 5'UTR 0.37 TCGA-91-6836-01 14 22466300 22466300 A T TRAV17 Missense_Mutation p.H77L 0.45 tolerated(0.18) benign(0.003) TCGA-91-6836-01 14 23892795 23892795 C G MYH7 Silent p.L1020L 0.31 TCGA-91-6836-01 14 31604167 31604167 C A HECTD1 Silent p.L1163L 0.15 TCGA-91-6836-01 14 34269371 34269371 G A NPAS3 Missense_Mutation p.A620T 0.62 tolerated_low_confidence(0.55) benign(0) TCGA-91-6836-01 14 60212999 60212999 G A RTN1 Missense_Mutation p.P148S 0.64 tolerated(0.39) benign(0.004) TCGA-91-6836-01 14 60213133 60213133 G C RTN1 Missense_Mutation p.S103W 0.49 deleterious(0.01) possibly_damaging(0.648) TCGA-91-6836-01 14 70518773 70518773 C A SLC8A3 Missense_Mutation p.M655I 0.59 deleterious(0.01) benign(0.035) TCGA-91-6836-01 14 90446935 90446935 C T TDP1 Silent p.T281T 0.50 TCGA-91-6836-01 14 95884073 95884073 C A SYNE3 3'UTR 0.52 TCGA-91-6836-01 14 96756080 96756080 C A ATG2B Missense_Mutation p.K1973N 0.42 deleterious(0.03) probably_damaging(0.916) TCGA-91-6836-01 15 100332193 100332193 G A AC090825.1 5'Flank 0.35 TCGA-91-6836-01 15 20170068 20170068 T A IGHV1OR15-9 Silent p.G68G 0.35 TCGA-91-6836-01 15 20170069 20170069 C T IGHV1OR15-9 Missense_Mutation p.G68E 0.35 deleterious(0.01) probably_damaging(0.917) TCGA-91-6836-01 15 22473103 22473103 C A IGHV4OR15-8 Missense_Mutation p.W56C 0.23 deleterious(0) probably_damaging(1) TCGA-91-6836-01 15 23931737 23931737 C T NDN Missense_Mutation p.V210I 0.19 tolerated(0.28) probably_damaging(0.996) TCGA-91-6836-01 15 24921349 24921349 G T NPAP1 Missense_Mutation p.S112I 0.26 tolerated(0.06) benign(0.431) TCGA-91-6836-01 15 25221498 25221498 G T SNRPN Missense_Mutation p.G68C 0.35 deleterious(0) probably_damaging(1) TCGA-91-6836-01 15 25620797 25620797 C A UBE3A Missense_Mutation p.R62L 0.34 tolerated(0.27) benign(0.01) TCGA-91-6836-01 15 28424305 28424305 G T HERC2 Missense_Mutation p.S3001Y 0.44 probably_damaging(0.995) TCGA-91-6836-01 15 33927929 33927929 G T RYR3 Missense_Mutation p.G1097V 0.65 probably_damaging(1) TCGA-91-6836-01 15 42676731 42676731 C T CAPN3 Silent p.D120D 0.58 TCGA-91-6836-01 15 45404832 45404832 C G DUOX2 Missense_Mutation p.R82P 0.65 deleterious(0) probably_damaging(1) TCGA-91-6836-01 15 49903457 49903457 T A FAM227B Missense_Mutation p.Q20H 0.60 tolerated(0.12) benign(0.058) TCGA-91-6836-01 15 50544822 50544822 A T HDC Missense_Mutation p.C313S 0.56 deleterious(0.01) probably_damaging(0.968) TCGA-91-6836-01 15 59911449 59911449 C A GCNT3 Missense_Mutation p.R338S 0.69 deleterious(0.01) probably_damaging(1) TCGA-91-6836-01 15 65890720 65890720 G A VWA9 Silent p.P172P 0.60 TCGA-91-6836-01 15 70961405 70961405 C G UACA Missense_Mutation p.E540Q 0.36 deleterious(0.01) benign(0.143) TCGA-91-6836-01 15 72495421 72495421 C A PKM Missense_Mutation p.V417L 0.59 deleterious(0.02) benign(0.221) TCGA-91-6836-01 15 74963911 74963911 C A EDC3 Silent p.V123V 0.60 TCGA-91-6836-01 15 81633780 81633780 C T TMC3 Missense_Mutation p.A599T 0.60 deleterious(0.02) probably_damaging(0.98) TCGA-91-6836-01 15 84286886 84286886 G A SH3GL3 Silent p.E297E 0.59 TCGA-91-6836-01 15 84561633 84561633 G T ADAMTSL3 Missense_Mutation p.W487L 0.64 deleterious(0) probably_damaging(1) TCGA-91-6836-01 15 84561634 84561634 G T ADAMTSL3 Missense_Mutation p.W487C 0.61 deleterious(0) probably_damaging(1) TCGA-91-6836-01 15 85383197 85383197 G T ALPK3 Silent p.G431G 0.39 TCGA-91-6836-01 15 89400720 89400720 G A ACAN Missense_Mutation p.G1635E 0.59 deleterious(0.02) possibly_damaging(0.831) TCGA-91-6836-01 15 91801710 91801710 G A SV2B Missense_Mutation p.V282I 0.31 tolerated(0.05) benign(0.127) TCGA-91-6836-01 16 1388961 1388961 G A BAIAP3 Missense_Mutation p.E99K 0.16 deleterious(0.03) benign(0.297) TCGA-91-6836-01 16 14280892 14280892 G T MKL2 Intron 0.53 TCGA-91-6836-01 16 14576651 14576651 C A PARN Missense_Mutation p.R505L 0.25 deleterious(0.01) possibly_damaging(0.57) TCGA-91-6836-01 16 14960471 14960471 G T NOMO1 Nonsense_Mutation p.E577* 0.42 TCGA-91-6836-01 16 15029134 15029134 G T NPIPA1 5'Flank 0.31 TCGA-91-6836-01 16 15045798 15045798 A G NPIPA1 Silent p.S323S 0.15 TCGA-91-6836-01 16 15811172 15811172 G T MYH11 Missense_Mutation p.R1784S 0.38 probably_damaging(0.999) TCGA-91-6836-01 16 2155467 2155467 C A PKD1 Silent p.R2624R 0.35 TCGA-91-6836-01 16 2222317 2222317 C T TRAF7 Missense_Mutation p.P201S 0.22 tolerated(0.68) benign(0) TCGA-91-6836-01 16 23080432 23080432 T A USP31 Silent p.V998V 0.40 TCGA-91-6836-01 16 24358105 24358105 G T CACNG3 Missense_Mutation p.D88Y 0.14 deleterious(0) probably_damaging(0.987) TCGA-91-6836-01 16 24919397 24919397 C A SLC5A11 Missense_Mutation p.P460Q 0.21 deleterious(0) probably_damaging(0.996) TCGA-91-6836-01 16 27374557 27374557 A G IL4R Silent p.E628E 0.30 TCGA-91-6836-01 16 27720169 27720169 G A KIAA0556 Silent p.S511S 0.42 TCGA-91-6836-01 16 2871423 2871423 A G PRSS21 Silent p.G254G 0.15 TCGA-91-6836-01 16 28920082 28920082 C A RABEP2 Nonsense_Mutation p.E365* 0.48 TCGA-91-6836-01 16 30486638 30486638 G T ITGAL Missense_Mutation p.G59V 0.16 deleterious(0) probably_damaging(0.987) TCGA-91-6836-01 16 31427890 31427890 G T ITGAD Missense_Mutation p.G808C 0.44 deleterious(0) probably_damaging(1) TCGA-91-6836-01 16 31427891 31427891 G T ITGAD Missense_Mutation p.G808V 0.43 deleterious(0) probably_damaging(1) TCGA-91-6836-01 16 3724427 3724427 C A TRAP1 Silent p.A319A 0.60 TCGA-91-6836-01 16 50261809 50261809 G A PAPD5 Silent p.G605G 0.45 TCGA-91-6836-01 16 55880441 55880441 G A CES5A Silent p.S579S 0.55 TCGA-91-6836-01 16 66837013 66837013 C A NAE1 Missense_Mutation p.A502S 0.52 tolerated(0.13) possibly_damaging(0.885) TCGA-91-6836-01 16 68597524 68597524 G T ZFP90 Silent p.G278G 0.29 TCGA-91-6836-01 16 70070376 70070376 C A PDXDC2P RNA 0.15 TCGA-91-6836-01 16 72162647 72162647 C A PMFBP1 Missense_Mutation p.R666L 0.21 deleterious(0.01) benign(0.198) TCGA-91-6836-01 16 73126860 73126860 T A HCCAT5 RNA 0.49 TCGA-91-6836-01 16 73127034 73127034 C A HCCAT5 RNA 0.42 TCGA-91-6836-01 16 81942093 81942093 G T PLCG2 Nonsense_Mutation p.E544* 0.17 TCGA-91-6836-01 16 90161582 90161582 C A TUBB8P7 RNA 0.22 TCGA-91-6836-01 16 90162240 90162240 G T TUBB8P7 RNA 0.09 TCGA-91-6836-01 17 10206531 10206531 C T MYH13 Silent p.K1883K 0.57 TCGA-91-6836-01 17 11778439 11778439 C A DNAH9 Silent p.G3472G 0.64 TCGA-91-6836-01 17 19699554 19699554 G C ULK2 Silent p.S617S 0.33 TCGA-91-6836-01 17 21318834 21318834 G T KCNJ12 Missense_Mutation p.M60I 0.14 tolerated(0.44) benign(0.024) TCGA-91-6836-01 17 26817355 26817355 G T SLC13A2 Nonsense_Mutation p.E88* 0.36 TCGA-91-6836-01 17 27042267 27042267 C T RAB34 Silent p.E210E 0.52 TCGA-91-6836-01 17 27420399 27420399 T C MYO18A Missense_Mutation p.Q1623R 0.30 deleterious(0.03) possibly_damaging(0.534) TCGA-91-6836-01 17 36958280 36958280 G A CWC25 3'UTR 0.23 TCGA-91-6836-01 17 37296055 37296055 G T PLXDC1 Missense_Mutation p.A36D 0.35 tolerated(0.25) benign(0.004) TCGA-91-6836-01 17 38926347 38926347 C A KRT26 Missense_Mutation p.G237W 0.31 deleterious(0) probably_damaging(0.997) TCGA-91-6836-01 17 39383291 39383291 C G KRTAP9-2 Missense_Mutation p.P129A 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-91-6836-01 17 39593787 39593787 G A KRT38 Silent p.P416P 0.38 TCGA-91-6836-01 17 41142355 41142355 A G RUNDC1 Missense_Mutation p.Q293R 0.40 tolerated(0.52) benign(0.024) TCGA-91-6836-01 17 46262150 46262150 G A SKAP1 Silent p.L168L 0.43 TCGA-91-6836-01 17 56621647 56621647 C T C17orf47 5'UTR 0.42 TCGA-91-6836-01 17 56688569 56688569 G T TEX14 Silent p.I385I 0.33 TCGA-91-6836-01 17 58236701 58236701 G T CA4 Silent p.G285G 0.60 TCGA-91-6836-01 17 6604360 6604360 C A SLC13A5 Missense_Mutation p.A268S 0.64 tolerated(0.7) benign(0.028) TCGA-91-6836-01 17 72246134 72246134 G T TTYH2 Silent p.L330L 0.41 TCGA-91-6836-01 17 73043644 73043644 G A KCTD2 Missense_Mutation p.R100H 0.20 deleterious(0.03) probably_damaging(0.96) TCGA-91-6836-01 17 7574000 7574000 C A TP53 Nonsense_Mutation p.E343* 0.47 TCGA-91-6836-01 17 76503452 76503452 C A DNAH17 Splice_Site p.X1525_splice 0.38 TCGA-91-6836-01 17 7681483 7681483 C A DNAH2 Missense_Mutation p.T1779N 0.16 probably_damaging(1) TCGA-91-6836-01 17 78172397 78172397 C T CARD14 Intron 0.14 TCGA-91-6836-01 17 8092892 8092892 C A C17orf59 Silent p.A189A 0.70 TCGA-91-6836-01 18 15323341 15323341 T A RNU6-721P 5'Flank 0.27 TCGA-91-6836-01 18 30518004 30518004 T A CCDC178 Missense_Mutation p.T859S 0.60 tolerated(0.08) benign(0.368) TCGA-91-6836-01 18 40850301 40850301 G T SYT4 3'UTR 0.59 TCGA-91-6836-01 18 43668094 43668096 CAC - ATP5A1 In_Frame_Del p.V260del 0.34 TCGA-91-6836-01 18 5419871 5419871 C A EPB41L3 Missense_Mutation p.G449C 0.52 deleterious(0) probably_damaging(0.998) TCGA-91-6836-01 19 10793266 10793266 G - ILF3 Frame_Shift_Del p.E480Rfs*20 0.15 TCGA-91-6836-01 19 17893866 17893866 C A FCHO1 Missense_Mutation p.P660T 0.70 deleterious(0) possibly_damaging(0.818) TCGA-91-6836-01 19 2226932 2226932 G C DOT1L Missense_Mutation p.G1471A 0.65 tolerated_low_confidence(0.07) benign(0.026) TCGA-91-6836-01 19 2438277 2438277 C A LMNB2 Missense_Mutation p.G190C 0.54 deleterious(0.01) probably_damaging(0.988) TCGA-91-6836-01 19 31039467 31039467 C A ZNF536 Silent p.R981R 0.55 TCGA-91-6836-01 19 41025943 41025943 G A SPTBN4 Missense_Mutation p.G1180D 0.68 deleterious(0.01) probably_damaging(1) TCGA-91-6836-01 19 41522587 41522587 C A CYP2B6 Missense_Mutation p.A444E 0.76 deleterious(0) benign(0.08) TCGA-91-6836-01 19 42398702 42398702 C T ARHGEF1 Missense_Mutation p.P297L 0.69 deleterious(0.04) benign(0.353) TCGA-91-6836-01 19 46282585 46282585 C A DMPK Missense_Mutation p.L133F 0.66 deleterious(0) probably_damaging(1) TCGA-91-6836-01 19 51021718 51021718 C T LRRC4B Missense_Mutation p.D418N 0.66 tolerated(0.07) possibly_damaging(0.88) TCGA-91-6836-01 19 51192465 51192465 C A SHANK1 Missense_Mutation p.R679L 0.48 benign(0.001) TCGA-91-6836-01 19 51885706 51885706 C A LIM2 Silent p.R139R 0.58 TCGA-91-6836-01 19 52004768 52004768 T A SIGLEC12 Missense_Mutation p.I74F 0.64 tolerated(0.59) benign(0.001) TCGA-91-6836-01 19 52216704 52216704 G T HAS1 Silent p.T571T 0.75 TCGA-91-6836-01 19 52658909 52658909 G T ZNF836 Missense_Mutation p.T676N 0.64 tolerated(0.27) probably_damaging(0.987) TCGA-91-6836-01 19 53454623 53454623 C G ZNF816 Missense_Mutation p.L135F 0.56 tolerated(0.09) benign(0.126) TCGA-91-6836-01 19 54705008 54705008 C T RPS9 Intron 0.60 TCGA-91-6836-01 19 55046820 55046820 C A KIR3DX1 Missense_Mutation p.P122H 0.65 deleterious(0) probably_damaging(1) TCGA-91-6836-01 19 55048369 55048369 C A KIR3DX1 Missense_Mutation p.N312K 0.74 tolerated_low_confidence(0.19) benign(0) TCGA-91-6836-01 19 55331451 55331451 G A KIR3DL1 Silent p.L213L 0.64 TCGA-91-6836-01 19 56538872 56538872 C T NLRP5 Missense_Mutation p.R425C 0.62 deleterious(0.04) benign(0.271) TCGA-91-6836-01 19 5925686 5925686 C A RANBP3 Silent p.T292T 0.60 TCGA-91-6836-01 19 6665094 6665094 C A TNFSF14 Missense_Mutation p.R189L 0.67 tolerated(0.1) benign(0.134) TCGA-91-6836-01 19 9017374 9017374 G T MUC16 Silent p.T12650T 0.28 TCGA-91-6836-01 19 9072450 9072451 - G MUC16 Frame_Shift_Ins p.Q4999Pfs*38 0.32 TCGA-91-6836-01 19 9801313 9801313 G T ZNF812 Nonsense_Mutation p.S289* 0.59 TCGA-91-6836-01 1 10327560 10327560 G A KIF1B Silent p.L184L 0.48 TCGA-91-6836-01 1 109856583 109856583 T A SORT1 3'UTR 0.41 TCGA-91-6836-01 1 110737248 110737248 G T SLC6A17 Missense_Mutation p.M449I 0.22 tolerated(0.48) probably_damaging(0.987) TCGA-91-6836-01 1 11105579 11105579 C A MASP2 Missense_Mutation p.V144L 0.50 tolerated(0.22) benign(0.002) TCGA-91-6836-01 1 112234014 112234014 C T RAP1A Missense_Mutation p.S11L 0.23 deleterious(0) probably_damaging(0.984) TCGA-91-6836-01 1 11561436 11561436 G T PTCHD2 Missense_Mutation p.Q129H 0.50 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-91-6836-01 1 12339553 12339553 C T VPS13D Intron 0.42 TCGA-91-6836-01 1 1269215 1269215 C A TAS1R3 Missense_Mutation p.L644I 0.24 deleterious(0.01) probably_damaging(1) TCGA-91-6836-01 1 12888425 12888425 A T PRAMEF11 Silent p.P33P 0.18 TCGA-91-6836-01 1 14106796 14106796 G T PRDM2 Missense_Mutation p.G836C 0.46 probably_damaging(0.94) TCGA-91-6836-01 1 145696534 145696534 A G CD160 3'UTR 0.07 TCGA-91-6836-01 1 150471511 150471511 G T TARS2 Splice_Site p.X513_splice 0.12 TCGA-91-6836-01 1 152080220 152080220 C T TCHH Missense_Mutation p.E1825K 0.07 benign(0.292) TCGA-91-6836-01 1 152275730 152275730 T A FLG Missense_Mutation p.R3878W 0.13 unknown(0) TCGA-91-6836-01 1 152285060 152285060 C A FLG Missense_Mutation p.A768S 0.13 probably_damaging(0.989) TCGA-91-6836-01 1 152759848 152759848 C T LCE1E Missense_Mutation p.P25S 0.17 deleterious_low_confidence(0) unknown(0) TCGA-91-6836-01 1 153949471 153949471 C A JTB Silent p.V34V 0.11 TCGA-91-6836-01 1 153982511 153982511 T C NUP210L Missense_Mutation p.T1623A 0.08 tolerated(0.77) benign(0.032) TCGA-91-6836-01 1 154474139 154474139 T C SHE Missense_Mutation p.N122D 0.10 deleterious(0.01) probably_damaging(0.983) TCGA-91-6836-01 1 155584473 155584473 C T MSTO1 3'UTR 0.15 TCGA-91-6836-01 1 155837814 155837814 G A SYT11 Silent p.S31S 0.06 TCGA-91-6836-01 1 156642310 156642310 A T NES Missense_Mutation p.L557Q 0.79 deleterious(0.04) benign(0.232) TCGA-91-6836-01 1 1572836 1572836 C G CDK11B Missense_Mutation p.V505L 0.16 unknown(0) TCGA-91-6836-01 1 157665123 157665123 G T FCRL3 Silent p.V469V 0.04 TCGA-91-6836-01 1 158262417 158262417 C A CD1C Silent p.P214P 0.12 TCGA-91-6836-01 1 158435743 158435743 G A OR10K1 Missense_Mutation p.R131H 0.07 tolerated(0.31) benign(0.002) TCGA-91-6836-01 1 158435875 158435875 A G OR10K1 Missense_Mutation p.H175R 0.77 deleterious(0.04) benign(0.02) TCGA-91-6836-01 1 158549455 158549455 G T OR10X1 Missense_Mutation p.L79I 0.09 deleterious(0) probably_damaging(0.996) TCGA-91-6836-01 1 158549456 158549456 G T OR10X1 Missense_Mutation p.F78L 0.08 deleterious(0) probably_damaging(0.993) TCGA-91-6836-01 1 158641186 158641186 G T SPTA1 Missense_Mutation p.Q516K 0.82 tolerated(1) benign(0.068) TCGA-91-6836-01 1 158646003 158646005 TCT - SPTA1 In_Frame_Del p.E346del 0.12 TCGA-91-6836-01 1 159166863 159166863 C T CADM3 Intron 0.14 TCGA-91-6836-01 1 159779245 159779245 G T FCRL6 Missense_Mutation p.V220L 0.12 deleterious(0.01) probably_damaging(0.951) TCGA-91-6836-01 1 159805027 159805027 C A SLAMF8 Missense_Mutation p.P279T 0.08 tolerated_low_confidence(0.08) benign(0.003) TCGA-91-6836-01 1 160128798 160128798 C A ATP1A4 Missense_Mutation p.L178M 0.08 tolerated(0.05) possibly_damaging(0.76) TCGA-91-6836-01 1 161138863 161138863 C G PPOX Missense_Mutation p.L233V 0.06 tolerated(0.11) benign(0.133) TCGA-91-6836-01 1 161199615 161199615 A T NR1I3 Missense_Mutation p.M349K 0.83 deleterious(0.05) probably_damaging(0.971) TCGA-91-6836-01 1 171178118 171178118 G A FMO2 3'UTR 0.24 TCGA-91-6836-01 1 176564612 176564612 G T PAPPA2 Missense_Mutation p.R624S 0.37 tolerated(0.06) benign(0.004) TCGA-91-6836-01 1 178489999 178489999 G A TEX35 Missense_Mutation p.G178E 0.42 tolerated_low_confidence(0.73) possibly_damaging(0.483) TCGA-91-6836-01 1 190067402 190067402 G T BRINP3 Missense_Mutation p.L683M 0.23 deleterious(0.04) probably_damaging(0.997) TCGA-91-6836-01 1 196311317 196311317 C A KCNT2 Missense_Mutation p.G482V 0.20 deleterious(0.01) probably_damaging(1) TCGA-91-6836-01 1 196311318 196311318 C G KCNT2 Missense_Mutation p.G482R 0.20 deleterious(0.03) probably_damaging(1) TCGA-91-6836-01 1 197029500 197029500 G C F13B Missense_Mutation p.C267W 0.45 deleterious(0) probably_damaging(1) TCGA-91-6836-01 1 197102652 197102652 C T ASPM Silent p.E749E 0.35 TCGA-91-6836-01 1 201021711 201021711 G T CACNA1S Missense_Mutation p.F1309L 0.26 deleterious(0.02) probably_damaging(0.909) TCGA-91-6836-01 1 201356059 201356059 G A LAD1 Missense_Mutation p.R144W 0.25 deleterious(0) probably_damaging(0.998) TCGA-91-6836-01 1 205039099 205039099 T A CNTN2 Missense_Mutation p.Y781N 0.42 tolerated(0.24) probably_damaging(1) TCGA-91-6836-01 1 207890954 207890954 C A CR1L Missense_Mutation p.S520R 0.19 tolerated(0.19) benign(0.247) TCGA-91-6836-01 1 208218542 208218542 C T PLXNA2 Missense_Mutation p.C1170Y 0.23 deleterious(0.05) probably_damaging(0.993) TCGA-91-6836-01 1 208218557 208218557 T A PLXNA2 Splice_Site p.X1166_splice 0.25 TCGA-91-6836-01 1 215793562 215793562 G C KCTD3 Missense_Mutation p.V684L 0.20 tolerated_low_confidence(0.24) benign(0.001) TCGA-91-6836-01 1 217787488 217787488 C A GPATCH2 Missense_Mutation p.R277I 0.22 deleterious(0) probably_damaging(0.999) TCGA-91-6836-01 1 220088856 220088856 C A SLC30A10 Missense_Mutation p.D465Y 0.42 deleterious(0) possibly_damaging(0.547) TCGA-91-6836-01 1 222802876 222802876 G T MIA3 Missense_Mutation p.D772Y 0.55 tolerated(0.16) possibly_damaging(0.51) TCGA-91-6836-01 1 228346748 228346748 G C GJC2 Missense_Mutation p.S430T 0.45 tolerated(0.2) possibly_damaging(0.899) TCGA-91-6836-01 1 228479688 228479688 G T OBSCN Missense_Mutation p.A3906S 0.46 possibly_damaging(0.686) TCGA-91-6836-01 1 22974119 22974119 G A C1QC Missense_Mutation p.G194D 0.28 tolerated(1) benign(0.001) TCGA-91-6836-01 1 229772860 229772860 G C URB2 Missense_Mutation p.V834L 0.24 tolerated(0.51) benign(0) TCGA-91-6836-01 1 236645688 236645688 G T EDARADD Silent p.L129L 0.46 TCGA-91-6836-01 1 237947924 237947924 C A RYR2 Silent p.G4304G 0.57 TCGA-91-6836-01 1 241262011 241262011 G T RGS7 Missense_Mutation p.R44S 0.42 deleterious(0) probably_damaging(0.986) TCGA-91-6836-01 1 247978437 247978437 G A OR14A16 Missense_Mutation p.L199F 0.33 tolerated(0.63) benign(0.048) TCGA-91-6836-01 1 248756792 248756792 G C OR2T10 Missense_Mutation p.S93W 0.64 deleterious(0) probably_damaging(0.995) TCGA-91-6836-01 1 249152029 249152029 G A ZNF692 Missense_Mutation p.A75V 0.50 deleterious(0.01) probably_damaging(0.948) TCGA-91-6836-01 1 29618423 29618423 G T PTPRU Missense_Mutation p.Q797H 0.35 tolerated(0.11) benign(0.002) TCGA-91-6836-01 1 32503442 32503442 T A KHDRBS1 Silent p.R304R 0.49 TCGA-91-6836-01 1 35972379 35972379 C A KIAA0319L Missense_Mutation p.R167I 0.52 deleterious_low_confidence(0.01) benign(0.061) TCGA-91-6836-01 1 36316599 36316599 G T AGO4 Missense_Mutation p.A808S 0.24 deleterious(0.04) probably_damaging(0.988) TCGA-91-6836-01 1 60125889 60125889 A T FGGY Splice_Site p.X432_splice 0.30 TCGA-91-6836-01 1 62261224 62261224 A T INADL Silent p.I418I 0.21 TCGA-91-6836-01 1 66081754 66081754 T G LEPR Missense_Mutation p.C687G 0.19 tolerated(0.47) benign(0) TCGA-91-6836-01 1 67145433 67145433 C A SGIP1 Missense_Mutation p.P271Q 0.33 tolerated_low_confidence(0.2) benign(0.033) TCGA-91-6836-01 1 67205156 67205156 C G SGIP1 Missense_Mutation p.Q724E 0.36 deleterious(0) possibly_damaging(0.841) TCGA-91-6836-01 1 68512651 68512651 G T DIRAS3 Missense_Mutation p.H110Q 0.18 tolerated(0.35) probably_damaging(0.992) TCGA-91-6836-01 1 70518721 70518721 C G LRRC7 Missense_Mutation p.Q1337E 0.21 deleterious(0.03) benign(0.131) TCGA-91-6836-01 1 76779642 76779642 C A ST6GALNAC3 Silent p.P57P 0.60 TCGA-91-6836-01 1 82409162 82409162 G A LPHN2 Missense_Mutation p.E303K 0.56 deleterious(0.01) possibly_damaging(0.547) TCGA-91-6836-01 20 14307564 14307564 C A FLRT3 Missense_Mutation p.G197C 0.31 deleterious(0) probably_damaging(0.949) TCGA-91-6836-01 20 1559271 1559271 G T RP4-576H24.4 Nonsense_Mutation p.S48* 0.72 TCGA-91-6836-01 20 21695407 21695407 C A PAX1 Missense_Mutation p.S524Y 0.24 deleterious_low_confidence(0) benign(0) TCGA-91-6836-01 20 29977020 29977020 C A DEFB119 Missense_Mutation p.M25I 0.37 tolerated(0.21) benign(0.06) TCGA-91-6836-01 20 31672738 31672738 C A BPIFB4 Silent p.R240R 0.32 TCGA-91-6836-01 20 33338275 33338275 C A NCOA6 Missense_Mutation p.G575W 0.46 probably_damaging(0.999) TCGA-91-6836-01 20 36852001 36852001 G T KIAA1755 Missense_Mutation p.S736Y 0.32 deleterious(0.04) probably_damaging(0.969) TCGA-91-6836-01 20 4768370 4768370 G C RASSF2 Missense_Mutation p.P241R 0.44 deleterious(0) probably_damaging(1) TCGA-91-6836-01 20 5556162 5556162 C T GPCPD1 Missense_Mutation p.G300R 0.52 tolerated(0.09) benign(0.031) TCGA-91-6836-01 20 57768084 57768084 A T ZNF831 Silent p.T670T 0.42 TCGA-91-6836-01 20 742374 742374 G A SLC52A3 Nonsense_Mutation p.Q390* 0.41 TCGA-91-6836-01 20 8639185 8639185 T C PLCB1 Silent p.F232F 0.42 TCGA-91-6836-01 21 10942744 10942744 C - TPTE Frame_Shift_Del p.D233Mfs*5 0.13 TCGA-91-6836-01 21 11029702 11029702 G A BAGE2 RNA 0.08 TCGA-91-6836-01 21 30724120 30724120 A T BACH1-IT1 RNA 0.58 TCGA-91-6836-01 21 32499417 32499417 C T TIAM1 Missense_Mutation p.G1367R 0.45 deleterious(0) possibly_damaging(0.78) TCGA-91-6836-01 21 40777865 40777865 C T LCA5L Silent p.V652V 0.41 TCGA-91-6836-01 21 45107884 45107884 T G RRP1B Silent p.P543P 0.59 TCGA-91-6836-01 21 45994249 45994249 C T KRTAP10-4 Missense_Mutation p.T205M 0.24 tolerated(0.11) unknown(0) TCGA-91-6836-01 22 16287388 16287389 CA T POTEH Frame_Shift_Del p.M166Kfs*38 0.17 TCGA-91-6836-01 22 17445735 17445735 C A GAB4 Missense_Mutation p.S466I 0.51 tolerated(0.22) possibly_damaging(0.766) TCGA-91-6836-01 22 26107113 26107113 G T ADRBK2 Missense_Mutation p.D492Y 0.66 deleterious(0) probably_damaging(0.951) TCGA-91-6836-01 22 39224385 39224385 G A NPTXR Missense_Mutation p.R253C 0.62 deleterious(0) probably_damaging(0.997) TCGA-91-6836-01 22 39498048 39498048 G A APOBEC3H Splice_Site p.X181_splice 0.41 TCGA-91-6836-01 22 42606569 42606569 C A TCF20 Missense_Mutation p.R1581S 0.34 probably_damaging(0.975) TCGA-91-6836-01 22 43529315 43529315 C T MCAT Missense_Mutation p.A303T 0.28 deleterious(0.04) benign(0.027) TCGA-91-6836-01 22 51123021 51123021 C T SHANK3 Silent p.I324I 0.31 TCGA-91-6836-01 2 102979110 102979110 G T IL18R1 5'UTR 0.19 TCGA-91-6836-01 2 103380886 103380886 A T TMEM182 Missense_Mutation p.I111F 0.22 deleterious(0) possibly_damaging(0.833) TCGA-91-6836-01 2 109086135 109086135 A T GCC2 Missense_Mutation p.H117L 0.32 tolerated(0.1) benign(0.016) TCGA-91-6836-01 2 109352197 109352197 G T RANBP2 Silent p.S205S 0.52 TCGA-91-6836-01 2 109527319 109527319 G T EDAR Intron 0.15 TCGA-91-6836-01 2 113671411 113671411 C A IL37 Missense_Mutation p.T42N 0.70 tolerated(0.06) benign(0) TCGA-91-6836-01 2 116485436 116485436 G T DPP10 Missense_Mutation p.K211N 0.38 tolerated(0.33) benign(0.01) TCGA-91-6836-01 2 119600613 119600613 T A EN1 Missense_Mutation p.K360N 0.21 deleterious(0) probably_damaging(1) TCGA-91-6836-01 2 141214101 141214101 G TT LRP1B Frame_Shift_Ins p.H3296Kfs*8 0.16 TCGA-91-6836-01 2 149857288 149857288 G T KIF5C Nonsense_Mutation p.E789* 0.50 TCGA-91-6836-01 2 152499151 152499151 A C NEB Nonsense_Mutation p.Y2770* 0.25 TCGA-91-6836-01 2 152554106 152554106 C T NEB Silent p.E403E 0.19 TCGA-91-6836-01 2 166170469 166170469 G T SCN2A Missense_Mutation p.G412C 0.11 deleterious(0.04) probably_damaging(1) TCGA-91-6836-01 2 1670144 1670144 C A PXDN Missense_Mutation p.G378V 0.30 deleterious(0) possibly_damaging(0.905) TCGA-91-6836-01 2 169764212 169764212 G T G6PC2 Missense_Mutation p.D231Y 0.60 deleterious(0) probably_damaging(0.969) TCGA-91-6836-01 2 169851962 169851962 G C ABCB11 Missense_Mutation p.Q170E 0.20 deleterious(0.01) possibly_damaging(0.745) TCGA-91-6836-01 2 175436859 175436859 T A WIPF1 Missense_Mutation p.N225I 0.18 deleterious(0.01) benign(0.143) TCGA-91-6836-01 2 179457751 179457751 G C TTN Missense_Mutation p.L19699V 0.17 TCGA-91-6836-01 2 185801036 185801036 G A ZNF804A Missense_Mutation p.A305T 0.12 tolerated(1) benign(0) TCGA-91-6836-01 2 1983509 1983509 G T MYT1L Missense_Mutation p.S14Y 0.33 deleterious(0) unknown(0) TCGA-91-6836-01 2 1983510 1983510 A T MYT1L Missense_Mutation p.S14T 0.33 deleterious(0) unknown(0) TCGA-91-6836-01 2 200298192 200298192 G A SATB2 Missense_Mutation p.S72F 0.20 tolerated(0.13) benign(0.001) TCGA-91-6836-01 2 201434433 201434433 T A SGOL2 Missense_Mutation p.M174K 0.57 tolerated(0.28) benign(0.015) TCGA-91-6836-01 2 203776157 203776157 A G WDR12 Splice_Site p.X14_splice 0.43 TCGA-91-6836-01 2 206997805 206997805 T G NDUFS1 Missense_Mutation p.M487L 0.38 tolerated(0.32) benign(0.004) TCGA-91-6836-01 2 20867364 20867364 C T GDF7 Missense_Mutation p.T122I 0.50 deleterious(0.01) probably_damaging(0.992) TCGA-91-6836-01 2 212543799 212543799 C G ERBB4 Missense_Mutation p.E534Q 0.38 deleterious(0.05) benign(0.008) TCGA-91-6836-01 2 219508601 219508601 C T ZNF142 Missense_Mutation p.G880S 0.53 tolerated(0.07) probably_damaging(0.961) TCGA-91-6836-01 2 230231815 230231815 G T DNER Missense_Mutation p.H626N 0.12 deleterious(0.02) benign(0.02) TCGA-91-6836-01 2 234465588 234465588 G A USP40 Silent p.S165S 0.62 TCGA-91-6836-01 2 29420529 29420529 G T ALK Missense_Mutation p.L1318M 0.10 deleterious(0.03) probably_damaging(0.939) TCGA-91-6836-01 2 29519816 29519816 G T ALK Silent p.A585A 0.20 TCGA-91-6836-01 2 33952183 33952183 G T AC009499.1 Intron 0.71 TCGA-91-6836-01 2 37395050 37395050 A T SULT6B1 3'UTR 0.64 TCGA-91-6836-01 2 39509685 39509685 C G MAP4K3 Missense_Mutation p.S533T 0.64 tolerated(0.42) benign(0.247) TCGA-91-6836-01 2 54114395 54114395 C A PSME4 Splice_Site p.X1577_splice 0.22 TCGA-91-6836-01 2 68415760 68415760 C A PPP3R1 Missense_Mutation p.G36C 0.19 deleterious(0) probably_damaging(0.999) TCGA-91-6836-01 2 73053107 73053107 C G EXOC6B 5'UTR 0.50 TCGA-91-6836-01 2 74867433 74867433 A G M1AP 5'UTR 0.47 TCGA-91-6836-01 2 79350291 79350291 G T REG1A Missense_Mutation p.D151Y 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-91-6836-01 2 80801389 80801389 C A CTNNA2 Missense_Mutation p.L615M 0.62 tolerated(0.14) benign(0.101) TCGA-91-6836-01 2 84518026 84518026 G A FUNDC2P2 RNA 0.20 TCGA-91-6836-01 2 85991195 85991195 C T ATOH8 Missense_Mutation p.R284W 0.08 deleterious(0) possibly_damaging(0.634) TCGA-91-6836-01 2 88405948 88405948 C T SMYD1 Silent p.S362S 0.27 TCGA-91-6836-01 2 90139360 90139360 C A IGKV1D-16 Missense_Mutation p.T44N 0.45 tolerated(0.15) benign(0.061) TCGA-91-6836-01 2 90199023 90199023 C A IGKV1D-12 Missense_Mutation p.P62T 0.55 deleterious(0.02) benign(0.411) TCGA-91-6836-01 2 91843461 91843461 C A AC027612.6 RNA 0.22 TCGA-91-6836-01 2 97405754 97405754 A T LMAN2L Silent p.L8L 0.12 TCGA-91-6836-01 3 100961605 100961605 C A IMPG2 Silent p.L983L 0.50 TCGA-91-6836-01 3 113003705 113003705 G A BOC Missense_Mutation p.R988K 0.25 tolerated(0.05) benign(0.297) TCGA-91-6836-01 3 120976087 120976087 T C STXBP5L Missense_Mutation p.L580P 0.36 tolerated(0.56) benign(0.001) TCGA-91-6836-01 3 122865001 122865001 G T PDIA5 Missense_Mutation p.R346I 0.27 deleterious(0) possibly_damaging(0.783) TCGA-91-6836-01 3 123166468 123166468 C G ADCY5 Missense_Mutation p.V309L 0.60 tolerated(1) benign(0.003) TCGA-91-6836-01 3 124160831 124160831 A T KALRN Nonsense_Mutation p.K1078* 0.29 TCGA-91-6836-01 3 133320041 133320041 G C TOPBP1 3'UTR 0.18 TCGA-91-6836-01 3 133910783 133910783 T G RYK Silent p.R310R 0.48 TCGA-91-6836-01 3 13916469 13916469 G C WNT7A Silent p.T91T 0.13 TCGA-91-6836-01 3 139181127 139181127 C T RBP2 Missense_Mutation p.D27N 0.44 tolerated(1) benign(0.016) TCGA-91-6836-01 3 169557830 169557830 T C LRRC31 Silent p.L533L 0.47 TCGA-91-6836-01 3 171965470 171965470 C T FNDC3B Missense_Mutation p.H138Y 0.21 tolerated(1) possibly_damaging(0.885) TCGA-91-6836-01 3 186389415 186389415 C T HRG Missense_Mutation p.S132F 0.17 tolerated(0.1) possibly_damaging(0.485) TCGA-91-6836-01 3 42917186 42917186 G C CYP8B1 Silent p.P41P 0.23 TCGA-91-6836-01 3 46945231 46945231 G A PTH1R 3'UTR 0.37 TCGA-91-6836-01 3 47308467 47308467 C A KIF9 Missense_Mutation p.G256V 0.45 deleterious(0.01) possibly_damaging(0.892) TCGA-91-6836-01 3 48629362 48629362 A T COL7A1 Silent p.R442R 0.47 TCGA-91-6836-01 3 49159605 49159605 C A LAMB2 Missense_Mutation p.R1591L 0.59 deleterious(0.01) benign(0.106) TCGA-91-6836-01 3 49850106 49850106 G C UBA7 Missense_Mutation p.T178R 0.25 deleterious(0.02) benign(0.006) TCGA-91-6836-01 3 64601038 64601038 C A ADAMTS9 Nonsense_Mutation p.E1050* 0.25 TCGA-91-6836-01 3 65342517 65342517 C A MAGI1 Missense_Mutation p.A1309S 0.20 tolerated(1) benign(0.019) TCGA-91-6836-01 3 68934411 68934411 C G FAM19A4 5'UTR 0.52 TCGA-91-6836-01 3 71733846 71733846 C A EIF4E3 Missense_Mutation p.R221L 0.15 deleterious(0.04) possibly_damaging(0.589) TCGA-91-6836-01 3 75679986 75679986 C G MIR1324 RNA 0.08 TCGA-91-6836-01 3 7620333 7620333 C T GRM7 Silent p.P580P 0.51 TCGA-91-6836-01 4 10027616 10027616 T C SLC2A9 5'Flank 0.46 TCGA-91-6836-01 4 10447805 10447805 C A ZNF518B Missense_Mutation p.A50S 0.37 tolerated(0.05) benign(0.283) TCGA-91-6836-01 4 115891729 115891729 C A NDST4 Nonsense_Mutation p.E360* 0.50 TCGA-91-6836-01 4 123161126 123161126 G T KIAA1109 Missense_Mutation p.R1430M 0.11 possibly_damaging(0.547) TCGA-91-6836-01 4 123664927 123664927 C T BBS12 Missense_Mutation p.T627I 0.19 tolerated(0.3) benign(0.007) TCGA-91-6836-01 4 126411157 126411157 G A FAT4 Missense_Mutation p.V4394M 0.13 possibly_damaging(0.456) TCGA-91-6836-01 4 128808591 128808591 G T PLK4 Missense_Mutation p.A467S 0.48 tolerated(0.89) benign(0.002) TCGA-91-6836-01 4 129789081 129789081 A G JADE1 Missense_Mutation p.Q525R 0.20 deleterious(0) benign(0.168) TCGA-91-6836-01 4 13571655 13571655 C A BOD1L1 Missense_Mutation p.V3046L 0.45 benign(0.004) TCGA-91-6836-01 4 146479012 146479012 G T SMAD1 Missense_Mutation p.G442C 0.16 deleterious(0) probably_damaging(1) TCGA-91-6836-01 4 164506983 164506983 C T MARCH1 Nonsense_Mutation p.W114* 0.19 TCGA-91-6836-01 4 1729567 1729567 A T TACC3 Silent p.P146P 0.40 TCGA-91-6836-01 4 183836721 183836721 T A DCTD Missense_Mutation p.M12L 0.48 tolerated(1) benign(0) TCGA-91-6836-01 4 185709868 185709868 T C ACSL1 Silent p.R71R 0.35 TCGA-91-6836-01 4 2160923 2160923 C A POLN Missense_Mutation p.D524Y 0.37 deleterious(0) probably_damaging(0.988) TCGA-91-6836-01 4 24585975 24585975 G C DHX15 Silent p.P14P 0.23 TCGA-91-6836-01 4 3040188 3040188 C T GRK4 Missense_Mutation p.T544I 0.33 tolerated(0.27) benign(0.001) TCGA-91-6836-01 4 39064576 39064576 G C KLHL5 Missense_Mutation p.G148R 0.38 tolerated_low_confidence(0.14) benign(0.246) TCGA-91-6836-01 4 4283517 4283517 C T LYAR Nonsense_Mutation p.W77* 0.08 TCGA-91-6836-01 4 47746498 47746498 G T CORIN Nonsense_Mutation p.C240* 0.39 TCGA-91-6836-01 4 57377510 57377510 G T ARL9 Nonsense_Mutation p.E5* 0.18 TCGA-91-6836-01 4 5961051 5961051 T A C4orf50 3'UTR 0.31 TCGA-91-6836-01 4 67142601 67142601 G T MIR1269A RNA 0.14 TCGA-91-6836-01 4 68919688 68919688 G A TMPRSS11F Missense_Mutation p.P419L 0.22 deleterious(0) probably_damaging(1) TCGA-91-6836-01 4 79847797 79847806 AATTGGGATG - PAQR3 Frame_Shift_Del p.H191Tfs*22 0.18 TCGA-91-6836-01 4 85748105 85748105 T C WDFY3 Missense_Mutation p.K329R 0.18 tolerated(0.37) benign(0.001) TCGA-91-6836-01 4 90756767 90756767 C A SNCA Missense_Mutation p.A18S 0.31 deleterious(0) probably_damaging(0.996) TCGA-91-6836-01 4 90816474 90816474 C A MMRN1 Missense_Mutation p.P118T 0.20 tolerated_low_confidence(0.25) benign(0.118) TCGA-91-6836-01 4 96762101 96762101 C A PDHA2 Missense_Mutation p.A267E 0.30 deleterious(0) probably_damaging(0.994) TCGA-91-6836-01 4 96762102 96762102 A G PDHA2 Silent p.A267A 0.29 TCGA-91-6836-01 5 112903427 112903427 G T YTHDC2 Missense_Mutation p.R1042I 0.47 deleterious(0) probably_damaging(0.986) TCGA-91-6836-01 5 115205814 115205814 G T AP3S1 Missense_Mutation p.D88Y 0.20 deleterious(0) probably_damaging(0.998) TCGA-91-6836-01 5 1217012 1217012 C T SLC6A19 Silent p.Y375Y 0.57 TCGA-91-6836-01 5 131993990 131993990 C T IL13 Missense_Mutation p.P38S 0.48 tolerated(0.12) benign(0.165) TCGA-91-6836-01 5 133702193 133702193 C T CDKL3 Missense_Mutation p.G8R 0.11 deleterious(0) probably_damaging(0.975) TCGA-91-6836-01 5 139193892 139193892 G T PSD2 Missense_Mutation p.R320L 0.16 deleterious(0) probably_damaging(1) TCGA-91-6836-01 5 139740437 139740437 C A SLC4A9 Silent p.R115R 0.48 TCGA-91-6836-01 5 140501701 140501701 G C PCDHB4 Missense_Mutation p.G41R 0.36 deleterious_low_confidence(0.02) probably_damaging(0.972) TCGA-91-6836-01 5 140559020 140559020 C A PCDHB8 Missense_Mutation p.L469M 0.16 deleterious_low_confidence(0.02) benign(0.424) TCGA-91-6836-01 5 140768013 140768013 G T PCDHGB4 Missense_Mutation p.G188C 0.18 deleterious(0) probably_damaging(0.999) TCGA-91-6836-01 5 141244219 141244219 G A PCDH1 Silent p.P559P 0.22 TCGA-91-6836-01 5 141325308 141325308 G A PCDH12 Missense_Mutation p.L1065F 0.29 deleterious(0.03) possibly_damaging(0.747) TCGA-91-6836-01 5 142675083 142675083 C A NR3C1 Missense_Mutation p.R656S 0.24 deleterious(0.04) possibly_damaging(0.551) TCGA-91-6836-01 5 145894611 145894611 G T GPR151 Missense_Mutation p.P356T 0.51 tolerated(0.7) benign(0.055) TCGA-91-6836-01 5 150943133 150943133 T G FAT2 Silent p.A1109A 0.50 TCGA-91-6836-01 5 154395071 154395071 A T KIF4B Missense_Mutation p.Q551L 0.44 deleterious(0.03) benign(0.013) TCGA-91-6836-01 5 156186407 156186407 T A SGCD 3'UTR 0.45 TCGA-91-6836-01 5 156590559 156590559 A C FAM71B Missense_Mutation p.H239Q 0.49 tolerated(0.59) benign(0.001) TCGA-91-6836-01 5 161119185 161119185 T A GABRA6 Silent p.P355P 0.44 TCGA-91-6836-01 5 170160894 170160894 T C KCNIP1 Missense_Mutation p.C210R 0.29 deleterious(0) probably_damaging(1) TCGA-91-6836-01 5 171488252 171488252 C T STK10 Silent p.K701K 0.48 TCGA-91-6836-01 5 175843437 175843437 G A CLTB 5'UTR 0.78 TCGA-91-6836-01 5 178392832 178392832 C A ZNF454 Missense_Mutation p.A476D 0.42 deleterious(0.01) probably_damaging(0.978) TCGA-91-6836-01 5 178392833 178392833 C A ZNF454 Silent p.A476A 0.41 TCGA-91-6836-01 5 179668120 179668120 C G MAPK9 Missense_Mutation p.V303L 0.45 tolerated(0.14) benign(0.317) TCGA-91-6836-01 5 26881336 26881336 C A CDH9 Missense_Mutation p.C760F 0.12 deleterious(0.01) benign(0.067) TCGA-91-6836-01 5 32230269 32230269 G A MTMR12 Missense_Mutation p.S620F 0.12 deleterious(0) benign(0.128) TCGA-91-6836-01 5 33630891 33630891 T A ADAMTS12 Silent p.I672I 0.21 TCGA-91-6836-01 5 36984866 36984866 G C NIPBL Silent p.T528T 0.61 TCGA-91-6836-01 5 37107688 37107688 C A C5orf42 3'UTR 0.16 TCGA-91-6836-01 5 52145249 52145249 A T ITGA1 Missense_Mutation p.T38S 0.58 tolerated(0.74) benign(0.002) TCGA-91-6836-01 5 5239830 5239830 G A ADAMTS16 Missense_Mutation p.R772Q 0.11 tolerated(0.09) benign(0.382) TCGA-91-6836-01 5 63256774 63256774 G A HTR1A Missense_Mutation p.S258L 0.29 tolerated(0.32) benign(0.001) TCGA-91-6836-01 5 65054393 65054393 G A NLN Splice_Site p.X14_splice 0.46 TCGA-91-6836-01 5 74034397 74034397 C T GFM2 Missense_Mutation p.V384I 0.33 tolerated(0.06) possibly_damaging(0.836) TCGA-91-6836-01 5 83680180 83680180 C A EDIL3 Missense_Mutation p.V5L 0.47 tolerated_low_confidence(0.35) benign(0) TCGA-91-6836-01 5 89933562 89933562 G T GPR98 Silent p.R679R 0.22 TCGA-91-6836-01 5 94891012 94891012 A T ARSK Silent p.A10A 0.33 TCGA-91-6836-01 6 108068029 108068029 C A SCML4 Missense_Mutation p.Q117H 0.49 tolerated(0.08) benign(0.113) TCGA-91-6836-01 6 10928648 10928648 C A SYCP2L Missense_Mutation p.P485T 0.28 tolerated(0.77) benign(0.01) TCGA-91-6836-01 6 112469461 112469461 C T LAMA4 Missense_Mutation p.A751T 0.36 tolerated(1) benign(0.021) TCGA-91-6836-01 6 112510338 112510338 G - LAMA4 Frame_Shift_Del p.P263Lfs*9 0.25 TCGA-91-6836-01 6 118606475 118606475 T G SLC35F1 Missense_Mutation p.C326G 0.46 deleterious(0.01) possibly_damaging(0.636) TCGA-91-6836-01 6 121768117 121768117 G T GJA1 Nonsense_Mutation p.E42* 0.47 TCGA-91-6836-01 6 129601234 129601234 A T LAMA2 Missense_Mutation p.S827C 0.51 deleterious(0.03) possibly_damaging(0.838) TCGA-91-6836-01 6 131277383 131277383 C A EPB41L2 Missense_Mutation p.W81C 0.54 deleterious(0) probably_damaging(0.99) TCGA-91-6836-01 6 132891511 132891511 C A TAAR6 Missense_Mutation p.N17K 0.21 tolerated(0.08) benign(0.077) TCGA-91-6836-01 6 134495848 134495848 C A SGK1 Intron 0.55 TCGA-91-6836-01 6 143091192 143091192 T A HIVEP2 Missense_Mutation p.S1562C 0.53 deleterious(0.01) possibly_damaging(0.838) TCGA-91-6836-01 6 144838074 144838074 A G UTRN Missense_Mutation p.N1844S 0.60 tolerated(0.29) benign(0.008) TCGA-91-6836-01 6 155619654 155619654 T C TFB1M Silent p.V117V 0.65 TCGA-91-6836-01 6 170886768 170886768 C G PDCD2 Missense_Mutation p.R305T 0.21 tolerated(0.43) benign(0.014) TCGA-91-6836-01 6 25727536 25727536 G C HIST1H2BA 3'UTR 0.44 TCGA-91-6836-01 6 31685371 31685371 G C LY6G6D Missense_Mutation p.L64F 0.70 tolerated(0.12) possibly_damaging(0.765) TCGA-91-6836-01 6 33287172 33287172 C A DAXX Missense_Mutation p.G642V 0.54 tolerated(0.09) probably_damaging(0.999) TCGA-91-6836-01 6 345854 345854 G T DUSP22 Silent p.L63L 0.10 TCGA-91-6836-01 6 66204789 66204789 T A EYS Missense_Mutation p.Q172L 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.838) TCGA-91-6836-01 6 70981372 70981372 G T COL9A1 Missense_Mutation p.R377S 0.39 probably_damaging(0.982) TCGA-91-6836-01 6 74407275 74407275 C G CD109 Missense_Mutation p.A76G 0.29 tolerated(0.3) benign(0.002) TCGA-91-6836-01 6 82461570 82461570 G T FAM46A Missense_Mutation p.P97T 0.24 tolerated(0.2) possibly_damaging(0.597) TCGA-91-6836-01 6 84569410 84569410 G A CYB5R4 5'UTR 0.40 TCGA-91-6836-01 6 90661490 90661490 C A BACH2 Missense_Mutation p.C112F 0.30 deleterious(0) probably_damaging(1) TCGA-91-6836-01 7 100087213 100087213 C A NYAP1 Silent p.G623G 0.31 TCGA-91-6836-01 7 100454798 100454798 G T SLC12A9 Missense_Mutation p.A253S 0.43 tolerated(0.65) benign(0.042) TCGA-91-6836-01 7 121678889 121678889 G T PTPRZ1 Missense_Mutation p.W1816C 0.26 deleterious(0) probably_damaging(0.996) TCGA-91-6836-01 7 123593677 123593677 G C SPAM1 Missense_Mutation p.S18T 0.10 tolerated(0.14) benign(0.196) TCGA-91-6836-01 7 127235911 127235911 G T FSCN3 Missense_Mutation p.G232V 0.41 deleterious(0) probably_damaging(0.994) TCGA-91-6836-01 7 127255045 127255045 A T PAX4 Silent p.P75P 0.20 TCGA-91-6836-01 7 131853280 131853280 G T PLXNA4 Missense_Mutation p.Q1357K 0.31 deleterious(0.02) probably_damaging(0.994) TCGA-91-6836-01 7 136912820 136912820 C T PTN Missense_Mutation p.E152K 0.48 tolerated(0.59) unknown(0) TCGA-91-6836-01 7 142326540 142326540 C A TRBV19 5'UTR 0.37 TCGA-91-6836-01 7 142562413 142562413 C G EPHB6 Missense_Mutation p.H285Q 0.35 deleterious(0) possibly_damaging(0.757) TCGA-91-6836-01 7 143826632 143826632 C A OR2A14 Missense_Mutation p.L143M 0.26 tolerated(0.07) possibly_damaging(0.889) TCGA-91-6836-01 7 146997282 146997282 G T CNTNAP2 Missense_Mutation p.K466N 0.48 tolerated(0.05) benign(0.411) TCGA-91-6836-01 7 149463300 149463300 C A ZNF467 Missense_Mutation p.K97N 0.44 tolerated(0.05) probably_damaging(0.926) TCGA-91-6836-01 7 157931164 157931164 C A PTPRN2 Silent p.P318P 0.25 TCGA-91-6836-01 7 17374587 17374587 G A AHR Missense_Mutation p.D329N 0.22 deleterious(0.03) probably_damaging(0.996) TCGA-91-6836-01 7 17836341 17836341 T A SNX13 Intron 0.33 TCGA-91-6836-01 7 18705955 18705955 C A HDAC9 Missense_Mutation p.S529R 0.51 tolerated(0.46) possibly_damaging(0.474) TCGA-91-6836-01 7 20762825 20762825 C A ABCB5 Missense_Mutation p.L870I 0.18 deleterious(0.02) possibly_damaging(0.831) TCGA-91-6836-01 7 27148287 27148287 G T HOXA3 Silent p.R193R 0.16 TCGA-91-6836-01 7 27194526 27194526 C A HOXA7 3'UTR 0.64 TCGA-91-6836-01 7 31862691 31862691 G T PDE1C Silent p.P586P 0.42 TCGA-91-6836-01 7 32598970 32598970 T A AVL9 Missense_Mutation p.I370N 0.22 deleterious(0) probably_damaging(0.972) TCGA-91-6836-01 7 41729272 41729272 G T INHBA Silent p.I419I 0.18 TCGA-91-6836-01 7 42006074 42006074 C A GLI3 Missense_Mutation p.G866V 0.40 tolerated(0.08) probably_damaging(1) TCGA-91-6836-01 7 44807180 44807180 G A ZMIZ2 Silent p.T907T 0.27 TCGA-91-6836-01 7 5103959 5103959 G T RBAK Missense_Mutation p.C291F 0.26 deleterious(0) probably_damaging(1) TCGA-91-6836-01 7 56007028 56007028 G T ZNF713 Missense_Mutation p.D208Y 0.42 tolerated(0.15) benign(0.44) TCGA-91-6836-01 7 71036284 71036284 T C WBSCR17 Missense_Mutation p.I326T 0.51 deleterious(0.04) benign(0.013) TCGA-91-6836-01 7 73245979 73245979 C T CLDN4 Missense_Mutation p.P150S 0.53 deleterious(0.02) possibly_damaging(0.846) TCGA-91-6836-01 7 91729041 91729041 C T AKAP9 Missense_Mutation p.T3585I 0.27 possibly_damaging(0.818) TCGA-91-6836-01 7 94034181 94034181 C A COL1A2 Missense_Mutation p.P137T 0.28 unknown(0) TCGA-91-6836-01 7 98508155 98508155 G T TRRAP Missense_Mutation p.K579N 0.30 benign(0.012) TCGA-91-6836-01 8 104987690 104987690 A G RIMS2 Missense_Mutation p.I961M 0.45 tolerated_low_confidence(0.13) benign(0.171) TCGA-91-6836-01 8 105260983 105260983 G A RIMS2 Silent p.L1177L 0.60 TCGA-91-6836-01 8 120807872 120807872 C A TAF2 Splice_Site p.X364_splice 0.13 TCGA-91-6836-01 8 124243670 124243670 C A C8orf76 Nonsense_Mutation p.E229* 0.59 TCGA-91-6836-01 8 143958118 143958118 C A CYP11B1 Missense_Mutation p.W260L 0.75 deleterious(0) probably_damaging(1) TCGA-91-6836-01 8 144991022 144991022 C T PLEC Missense_Mutation p.D4460N 0.17 probably_damaging(1) TCGA-91-6836-01 8 41552783 41552783 C G ANK1 Silent p.L1050L 0.59 TCGA-91-6836-01 8 53071670 53071670 C T ST18 Splice_Site p.X532_splice 0.25 TCGA-91-6836-01 8 77616851 77616851 G T ZFHX4 Missense_Mutation p.K176N 0.37 possibly_damaging(0.607) TCGA-91-6836-01 8 77618638 77618638 G A ZFHX4 Missense_Mutation p.C772Y 0.41 possibly_damaging(0.588) TCGA-91-6836-01 8 77690582 77690582 C A ZFHX4 Silent p.R1078R 0.29 TCGA-91-6836-01 8 88885797 88885797 G T DCAF4L2 Missense_Mutation p.L135M 0.31 tolerated(0.06) probably_damaging(0.977) TCGA-91-6836-01 8 93023240 93023240 G C RUNX1T1 Missense_Mutation p.P194R 0.23 deleterious(0) probably_damaging(0.999) TCGA-91-6836-01 8 95501001 95501001 C A KIAA1429 Missense_Mutation p.G1791V 0.51 tolerated(0.27) benign(0.245) TCGA-91-6836-01 9 107361417 107361452 GAAATGGTCTTTCTTTCTGAAAGGAAGCTCACTAGC AAATGGTCTTTCTTTCTGAAACGAAGCTCACCAAG OR13C5 Frame_Shift_Del p.L86Vfs*32 0.13 TCGA-91-6836-01 9 107367773 107367773 T A OR13C2 Missense_Mutation p.I46F 0.38 deleterious(0) probably_damaging(0.996) TCGA-91-6836-01 9 111625556 111625556 C A ACTL7A Nonsense_Mutation p.C318* 0.55 TCGA-91-6836-01 9 116279874 116279874 G C RGS3 Silent p.L576L 0.26 TCGA-91-6836-01 9 117139859 117139859 C G AKNA Intron 0.30 TCGA-91-6836-01 9 124751870 124751870 G C TTLL11 Missense_Mutation p.I381M 0.20 tolerated(0.16) possibly_damaging(0.754) TCGA-91-6836-01 9 125621032 125621032 C A RC3H2 Silent p.R733R 0.16 TCGA-91-6836-01 9 131115780 131115780 G T SLC27A4 Silent p.L428L 0.20 TCGA-91-6836-01 9 131344978 131344978 G C SPTAN1 Missense_Mutation p.L552F 0.18 deleterious(0.01) probably_damaging(0.986) TCGA-91-6836-01 9 133967011 133967011 C A LAMC3 Missense_Mutation p.P1522Q 0.44 tolerated(0.14) benign(0.062) TCGA-91-6836-01 9 136277519 136277519 C A REXO4 Missense_Mutation p.Q270H 0.64 tolerated(0.06) benign(0.285) TCGA-91-6836-01 9 139370619 139370619 C A SEC16A Silent p.P483P 0.14 TCGA-91-6836-01 9 20365688 20365688 G C MLLT3 Missense_Mutation p.P394A 0.21 deleterious(0.03) benign(0.219) TCGA-91-6836-01 9 34372354 34372354 C A KIAA1161 Missense_Mutation p.W162C 0.77 deleterious(0) probably_damaging(0.999) TCGA-91-6836-01 9 40702753 40702753 C A SPATA31A3 Missense_Mutation p.S137Y 0.42 deleterious(0) probably_damaging(0.919) TCGA-91-6836-01 9 43630579 43630579 T A SPATA31A6 Silent p.L41L 0.15 TCGA-91-6836-01 9 6328761 6328761 C T TPD52L3 Missense_Mutation p.R56C 0.29 deleterious(0.04) benign(0.019) TCGA-91-6836-01 9 69403198 69403198 T C ANKRD20A4 Silent p.A296A 0.13 TCGA-91-6836-01 9 73218314 73218314 G C TRPM3 Missense_Mutation p.Q902E 0.58 deleterious(0) probably_damaging(0.985) TCGA-91-6836-01 9 732575 732575 A T KANK1 Missense_Mutation p.Q1068L 0.76 tolerated(0.12) benign(0.206) TCGA-91-6836-01 9 74319588 74319588 C A TMEM2 Missense_Mutation p.M1039I 0.56 deleterious(0.02) possibly_damaging(0.459) TCGA-91-6836-01 9 78547386 78547386 C A PCSK5 Nonsense_Mutation p.S95* 0.56 TCGA-91-6836-01 9 79117224 79117224 C T GCNT1 5'UTR 0.11 TCGA-91-6836-01 9 84562936 84562936 C G RP11-383M4.6 Intron 0.30 TCGA-91-6836-01 9 84608134 84608134 G A SPATA31D1 Missense_Mutation p.G917S 0.56 deleterious(0.01) probably_damaging(0.985) TCGA-91-6836-01 9 8486184 8486184 T A PTPRD Missense_Mutation p.D878V 0.20 deleterious(0.02) possibly_damaging(0.812) TCGA-91-6836-01 9 94519600 94519600 G T ROR2 Missense_Mutation p.N139K 0.16 deleterious(0.03) probably_damaging(0.998) TCGA-91-6836-01 X 103268067 103268067 G T H2BFWT Missense_Mutation p.Q56K 0.59 tolerated(0.46) possibly_damaging(0.679) TCGA-91-6836-01 X 105281047 105281047 C A SERPINA7 Translation_Start_Site p.M1? 0.38 deleterious(0) possibly_damaging(0.827) TCGA-91-6836-01 X 12938644 12938644 C T TLR8 Silent p.F495F 0.54 TCGA-91-6836-01 X 129498605 129498605 G A SLC25A14 Missense_Mutation p.V200M 0.58 tolerated(0.06) possibly_damaging(0.868) TCGA-91-6836-01 X 130215718 130215718 G T ARHGAP36 Missense_Mutation p.A27S 0.50 deleterious_low_confidence(0.05) benign(0.005) TCGA-91-6836-01 X 137715142 137715142 T A FGF13 Missense_Mutation p.M213L 0.68 tolerated(0.11) benign(0.038) TCGA-91-6836-01 X 147063138 147063138 C T FMR1NB Silent p.L72L 0.56 TCGA-91-6836-01 X 153133300 153133300 G T L1CAM Missense_Mutation p.R632S 0.66 tolerated(0.12) benign(0.235) TCGA-91-6836-01 X 32472826 32472826 C A DMD Nonsense_Mutation p.E1186* 0.44 TCGA-91-6836-01 X 3261706 3261706 C G MXRA5 Missense_Mutation p.V57L 0.38 deleterious(0) probably_damaging(0.999) TCGA-91-6836-01 X 47071826 47071826 A G UBA1 Missense_Mutation p.D823G 0.22 tolerated(0.09) benign(0.005) TCGA-91-6836-01 X 50051710 50051710 T A CCNB3 Missense_Mutation p.C181S 0.59 tolerated(0.54) benign(0.057) TCGA-91-6836-01 X 69283212 69283212 G T OTUD6A Missense_Mutation p.A280S 0.62 tolerated(0.55) benign(0.065) TCGA-91-6840-01 10 18834838 18834838 C G NSUN6 3'UTR 0.26 TCGA-91-6840-01 10 43596058 43596058 G A RET Silent p.T75T 0.21 TCGA-91-6840-01 10 70248311 70248311 G A SLC25A16 Missense_Mutation p.S229L 0.16 tolerated(0.62) benign(0.206) TCGA-91-6840-01 10 76924415 76924415 C T SAMD8 Silent p.I197I 0.15 TCGA-91-6840-01 10 90699218 90699218 G A ACTA2 Intron 0.32 TCGA-91-6840-01 11 134253852 134253852 G T B3GAT1 Missense_Mutation p.L115I 0.64 tolerated(0.1) benign(0.33) TCGA-91-6840-01 11 46744741 46744741 G A F2 Missense_Mutation p.E110K 0.20 tolerated(0.69) benign(0.013) TCGA-91-6840-01 11 58480243 58480243 T C GLYAT Silent p.L102L 0.26 TCGA-91-6840-01 11 59564823 59564823 C T STX3 Missense_Mutation p.S285F 0.12 tolerated(0.18) unknown(0) TCGA-91-6840-01 11 61672051 61672051 A T RAB3IL1 Missense_Mutation p.V289E 0.51 deleterious(0.01) benign(0.13) TCGA-91-6840-01 11 62566046 62566046 C T NXF1 Missense_Mutation p.A340T 0.33 tolerated(0.06) benign(0.011) TCGA-91-6840-01 11 65266725 65266725 G A MALAT1 RNA 0.71 TCGA-91-6840-01 11 73849987 73849987 C T C2CD3 Missense_Mutation p.E245K 0.34 deleterious(0.02) possibly_damaging(0.615) TCGA-91-6840-01 11 89880534 89880534 A C NAALAD2 Missense_Mutation p.E77D 0.42 tolerated(0.21) benign(0.002) TCGA-91-6840-01 11 95550948 95550948 C T CEP57 Intron 0.26 TCGA-91-6840-01 12 113629333 113629333 C T RITA1 Missense_Mutation p.P174L 0.11 tolerated(0.3) benign(0.187) TCGA-91-6840-01 12 121132786 121132786 T G MLEC Missense_Mutation p.Y192D 0.27 tolerated(0.19) benign(0.018) TCGA-91-6840-01 12 123201374 123201374 T C HCAR3 5'UTR 0.25 TCGA-91-6840-01 12 124497004 124497004 C T ZNF664 Missense_Mutation p.H105Y 0.14 deleterious(0) probably_damaging(1) TCGA-91-6840-01 12 130649158 130649159 - A FZD10 Frame_Shift_Ins p.A560Sfs*13 0.14 TCGA-91-6840-01 12 33003796 33003796 C G PKP2 Missense_Mutation p.D428H 0.33 deleterious(0) probably_damaging(0.966) TCGA-91-6840-01 12 4835792 4835792 G A GALNT8 Missense_Mutation p.M102I 0.71 tolerated(0.11) benign(0) TCGA-91-6840-01 12 57135352 57135352 G A PRIM1 Silent p.I283I 0.08 TCGA-91-6840-01 13 107148121 107148121 C T EFNB2 Missense_Mutation p.M158I 0.26 deleterious(0) probably_damaging(0.973) TCGA-91-6840-01 13 21295883 21295883 C A IL17D Missense_Mutation p.S133R 0.47 deleterious(0) probably_damaging(0.999) TCGA-91-6840-01 13 28141976 28141976 G C LNX2 Missense_Mutation p.T219S 0.16 tolerated(0.89) benign(0.001) TCGA-91-6840-01 13 28636175 28636175 G T FLT3 Missense_Mutation p.A66E 0.72 tolerated(0.28) benign(0.049) TCGA-91-6840-01 13 36125086 36125086 C G NBEA Missense_Mutation p.F2241L 0.30 tolerated(0.08) benign(0.143) TCGA-91-6840-01 13 42277540 42277540 G T VWA8 Missense_Mutation p.L1042M 0.36 deleterious(0.05) possibly_damaging(0.78) TCGA-91-6840-01 14 100793565 100793565 C T SLC25A47 Missense_Mutation p.T62M 0.13 tolerated(0.05) benign(0.386) TCGA-91-6840-01 14 102552609 102552616 GTATTGAT - HSP90AA1 Frame_Shift_Del p.I156Ffs*26 0.10 TCGA-91-6840-01 14 20020001 20020001 C T POTEM Missense_Mutation p.G74R 0.27 tolerated_low_confidence(0.15) probably_damaging(0.997) TCGA-91-6840-01 14 21058512 21058512 G A RNASE12 Missense_Mutation p.S124F 0.14 tolerated(0.81) benign(0.025) TCGA-91-6840-01 14 58605804 58605804 C G C14orf37 Silent p.S91S 0.11 TCGA-91-6840-01 14 58831658 58831658 C G ARID4A Missense_Mutation p.L951V 0.32 tolerated(0.34) benign(0.342) TCGA-91-6840-01 14 73957841 73957841 G A HEATR4 Intron 0.09 TCGA-91-6840-01 14 77942387 77942387 G T ISM2 Missense_Mutation p.L423M 0.85 deleterious(0.05) possibly_damaging(0.486) TCGA-91-6840-01 14 92480716 92480716 C G TRIP11 Missense_Mutation p.K343N 0.29 tolerated(0.32) benign(0.005) TCGA-91-6840-01 15 40475921 40475921 C G BUB1B Missense_Mutation p.F196L 0.41 tolerated(0.21) benign(0.392) TCGA-91-6840-01 15 42375420 42375420 C G PLA2G4D Missense_Mutation p.E216D 0.33 tolerated(0.36) benign(0.003) TCGA-91-6840-01 15 74325578 74325578 G T PML Nonsense_Mutation p.E494* 0.34 TCGA-91-6840-01 15 89421266 89421266 G A HAPLN3 Nonsense_Mutation p.R340* 0.20 TCGA-91-6840-01 16 14972646 14972646 C T NOMO1 Silent p.S904S 0.25 TCGA-91-6840-01 16 47497836 47497836 G C PHKB Intron 0.49 TCGA-91-6840-01 16 74525005 74525005 A G GLG1 Missense_Mutation p.I448T 0.23 deleterious(0) probably_damaging(0.977) TCGA-91-6840-01 16 9923359 9923359 G C GRIN2A Missense_Mutation p.A643G 0.06 deleterious(0) probably_damaging(0.999) TCGA-91-6840-01 17 26512286 26512286 G C NLK Missense_Mutation p.D411H 0.27 deleterious(0.02) probably_damaging(0.928) TCGA-91-6840-01 17 45016025 45016025 C T GOSR2 Missense_Mutation p.R180W 0.23 deleterious(0) probably_damaging(0.994) TCGA-91-6840-01 17 46846427 46846427 C T TTLL6 Missense_Mutation p.R867K 0.17 tolerated_low_confidence(0.19) benign(0.014) TCGA-91-6840-01 17 61842114 61842114 T C CCDC47 Missense_Mutation p.I120V 0.30 deleterious(0.03) benign(0.072) TCGA-91-6840-01 17 67190544 67190544 A G ABCA10 Silent p.L443L 0.28 TCGA-91-6840-01 17 7417451 7417451 C A POLR2A Silent p.L1956L 0.24 TCGA-91-6840-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.62 deleterious(0) probably_damaging(1) TCGA-91-6840-01 18 61582871 61582871 T C SERPINB10 Missense_Mutation p.Y43H 0.49 tolerated(0.05) benign(0.199) TCGA-91-6840-01 19 15839226 15839226 G A OR10H2 Missense_Mutation p.A125T 0.53 deleterious(0.02) probably_damaging(0.999) TCGA-91-6840-01 19 34936003 34936003 G T UBA2 Missense_Mutation p.D250Y 0.39 deleterious(0) benign(0.375) TCGA-91-6840-01 19 35849987 35849987 G A FFAR3 Silent p.L65L 0.25 TCGA-91-6840-01 19 38779813 38779813 G A SPINT2 Missense_Mutation p.D125N 0.42 tolerated(0.24) benign(0.024) TCGA-91-6840-01 19 48887602 48887602 G C KDELR1 Silent p.L163L 0.19 TCGA-91-6840-01 19 50029466 50029466 C G FCGRT 3'UTR 0.40 TCGA-91-6840-01 19 51918513 51918513 C G SIGLEC10 Missense_Mutation p.E418Q 0.18 deleterious(0.03) benign(0.417) TCGA-91-6840-01 19 58319454 58319454 G T ZNF552 Missense_Mutation p.S393Y 0.14 tolerated(0.2) benign(0.003) TCGA-91-6840-01 1 101190420 101190420 G C VCAM1 Missense_Mutation p.R301T 0.11 tolerated(0.19) benign(0.045) TCGA-91-6840-01 1 101194797 101194797 C G VCAM1 Missense_Mutation p.L355V 0.19 deleterious(0.04) probably_damaging(0.946) TCGA-91-6840-01 1 112042915 112042915 C T ADORA3 Intron 0.20 TCGA-91-6840-01 1 11273609 11273609 C T MTOR Missense_Mutation p.M1044I 0.19 tolerated(0.5) benign(0) TCGA-91-6840-01 1 157737457 157737457 C T FCRL2 Intron 0.25 TCGA-91-6840-01 1 169529792 169529793 - T F5 Frame_Shift_Ins p.G196Rfs*5 0.16 TCGA-91-6840-01 1 179013004 179013004 G T FAM20B Missense_Mutation p.V8L 0.18 tolerated(0.05) benign(0.118) TCGA-91-6840-01 1 19423145 19423145 C G UBR4 Splice_Site p.X4464_splice 0.16 TCGA-91-6840-01 1 200539118 200539118 C T KIF14 Missense_Mutation p.M1194I 0.29 deleterious(0.03) possibly_damaging(0.546) TCGA-91-6840-01 1 216172259 216172259 T C USH2A Silent p.L2209L 0.27 TCGA-91-6840-01 1 26228095 26228095 C A STMN1 Nonsense_Mutation p.E89* 0.30 TCGA-91-6840-01 1 32751144 32751144 C G LCK Missense_Mutation p.L453V 0.41 tolerated(0.73) probably_damaging(0.998) TCGA-91-6840-01 1 39340775 39340775 C A GJA9 Missense_Mutation p.E332D 0.25 tolerated(0.2) benign(0.003) TCGA-91-6840-01 1 40038208 40038208 T C PABPC4 Missense_Mutation p.I82V 0.27 tolerated(0.46) benign(0.035) TCGA-91-6840-01 1 48703369 48703369 G T SLC5A9 Silent p.L462L 0.20 TCGA-91-6840-01 1 55138776 55138776 C G MROH7 Missense_Mutation p.Q538E 0.24 tolerated(0.1) benign(0.076) TCGA-91-6840-01 1 67147963 67147963 C A SGIP1 Missense_Mutation p.A409E 0.41 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-91-6840-01 20 37202806 37202806 G C RALGAPB Missense_Mutation p.E1386Q 0.10 tolerated(0.12) probably_damaging(0.925) TCGA-91-6840-01 20 62038708 62038708 C G KCNQ2 Missense_Mutation p.K636N 0.17 deleterious(0) probably_damaging(1) TCGA-91-6840-01 21 11047530 11047530 C A BAGE2 RNA 0.05 TCGA-91-6840-01 21 30933950 30933950 G A GRIK1 Missense_Mutation p.P784L 0.35 deleterious(0) probably_damaging(0.997) TCGA-91-6840-01 21 38537922 38537922 G C TTC3 Missense_Mutation p.E1136Q 0.22 deleterious(0.02) probably_damaging(0.947) TCGA-91-6840-01 21 47855999 47855999 G C PCNT Missense_Mutation p.M2978I 0.29 benign(0.107) TCGA-91-6840-01 22 26118370 26118370 G A ADRBK2 Missense_Mutation p.E674K 0.17 tolerated_low_confidence(0.07) benign(0.066) TCGA-91-6840-01 22 38641953 38641953 C T TMEM184B Missense_Mutation p.D116N 0.33 tolerated(0.07) probably_damaging(0.918) TCGA-91-6840-01 2 113420601 113420601 G A SLC20A1 Silent p.%3D 0.14 TCGA-91-6840-01 2 158177848 158177848 G A ERMN Missense_Mutation p.R277W 0.12 deleterious(0) probably_damaging(1) TCGA-91-6840-01 2 164467519 164467519 G - FIGN Frame_Shift_Del p.L275Cfs*26 0.19 TCGA-91-6840-01 2 174081930 174081930 A C MLTK Missense_Mutation p.R313S 0.20 deleterious(0.05) possibly_damaging(0.804) TCGA-91-6840-01 2 179604792 179604792 C G TTN Missense_Mutation p.E4390Q 0.42 TCGA-91-6840-01 2 206590657 206590657 C A NRP2 Missense_Mutation p.L281M 0.23 deleterious(0.03) probably_damaging(0.998) TCGA-91-6840-01 2 220494078 220494078 G A SLC4A3 Missense_Mutation p.E144K 0.31 tolerated_low_confidence(0.51) benign(0.163) TCGA-91-6840-01 2 37076598 37076598 G A STRN 3'UTR 0.24 TCGA-91-6840-01 2 64685477 64685477 T C LGALSL Missense_Mutation p.F145S 0.39 deleterious(0.03) probably_damaging(0.993) TCGA-91-6840-01 3 122552161 122552161 C T DIRC2 Intron 0.19 TCGA-91-6840-01 3 126915686 126915686 C A C3orf56 Missense_Mutation p.T53N 0.65 deleterious(0.04) possibly_damaging(0.607) TCGA-91-6840-01 3 194392802 194392802 A T LSG1 Silent p.T30T 0.12 TCGA-91-6840-01 3 43732525 43732526 GA - ABHD5 Frame_Shift_Del p.R16Vfs*20 0.28 TCGA-91-6840-01 3 62358290 62358290 G C FEZF2 Nonsense_Mutation p.S85* 0.25 TCGA-91-6840-01 4 103910990 103910990 G A SLC9B1 Silent p.L60L 0.36 TCGA-91-6840-01 4 129857944 129857944 C G SCLT1 Missense_Mutation p.E565D 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-91-6840-01 4 138452016 138452016 C G PCDH18 Missense_Mutation p.K409N 0.38 deleterious(0.03) possibly_damaging(0.759) TCGA-91-6840-01 4 77476912 77476912 C T SHROOM3 Missense_Mutation p.R107C 0.30 deleterious(0) probably_damaging(0.999) TCGA-91-6840-01 5 112154981 112154981 G C APC Missense_Mutation p.E418Q 0.18 possibly_damaging(0.579) TCGA-91-6840-01 5 131978009 131978009 G C RAD50 Missense_Mutation p.E1298Q 0.19 deleterious(0.01) benign(0.023) TCGA-91-6840-01 5 13692194 13692194 G C DNAH5 Missense_Mutation p.R4592G 0.21 possibly_damaging(0.569) TCGA-91-6840-01 5 13830323 13830323 C T DNAH5 Splice_Site p.X2021_splice 0.52 TCGA-91-6840-01 5 139876307 139876307 G C ANKHD1 Missense_Mutation p.K816N 0.35 unknown(0) TCGA-91-6840-01 5 140203499 140203499 G A PCDHA5 Silent p.T713T 0.28 TCGA-91-6840-01 5 140228143 140228143 C T PCDHA9 Silent p.L21L 0.37 TCGA-91-6840-01 5 140537822 140537822 G C PCDHB17 3'UTR 0.35 TCGA-91-6840-01 5 140764587 140764587 C T PCDHGA7 Silent p.F707F 0.24 TCGA-91-6840-01 5 79032782 79032782 G T CMYA5 Missense_Mutation p.D2732Y 0.32 unknown(0) TCGA-91-6840-01 6 111714122 111714122 G C REV3L Missense_Mutation p.L207V 0.21 tolerated(0.16) benign(0.004) TCGA-91-6840-01 6 117023208 117023208 T C KPNA5 Silent p.N154N 0.12 TCGA-91-6840-01 6 150004976 150004976 G C LATS1 Missense_Mutation p.H417D 0.20 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-91-6840-01 6 152599341 152599341 C T SYNE1 Silent p.L6152L 0.24 TCGA-91-6840-01 6 165863740 165863740 G A PDE10A Silent p.I112I 0.22 TCGA-91-6840-01 6 29274772 29274772 C T OR14J1 Silent p.F102F 0.07 TCGA-91-6840-01 6 38885911 38885911 C G DNAH8 Missense_Mutation p.L3290V 0.11 probably_damaging(1) TCGA-91-6840-01 6 42858486 42858486 G C C6orf226 Missense_Mutation p.S14C 0.12 deleterious_low_confidence(0.01) benign(0.002) TCGA-91-6840-01 6 46847599 46847599 G A GPR116 Missense_Mutation p.S331L 0.06 tolerated(0.06) benign(0.177) TCGA-91-6840-01 7 100463720 100463720 C T SLC12A9 Silent p.L746L 0.15 TCGA-91-6840-01 7 103207077 103207077 G A RELN Missense_Mutation p.T1573M 0.33 deleterious(0) probably_damaging(0.999) TCGA-91-6840-01 7 129122844 129122844 G C STRIP2 Missense_Mutation p.Q737H 0.12 deleterious(0.01) benign(0.257) TCGA-91-6840-01 7 150498696 150498696 G C TMEM176A Missense_Mutation p.D20H 0.26 tolerated(0.1) benign(0.018) TCGA-91-6840-01 7 48317992 48317992 G C ABCA13 Missense_Mutation p.D2401H 0.26 benign(0.037) TCGA-91-6840-01 7 95041643 95041643 G C PON2 Missense_Mutation p.I116M 0.34 deleterious(0.03) possibly_damaging(0.465) TCGA-91-6840-01 8 105010410 105010410 C T RIMS2 Intron 0.16 TCGA-91-6840-01 8 11189308 11189308 G T SLC35G5 Silent p.L231L 0.14 TCGA-91-6840-01 8 12879335 12879335 G A KIAA1456 Missense_Mutation p.D383N 0.26 tolerated(0.2) benign(0.005) TCGA-91-6840-01 8 142444085 142444085 C T PTP4A3 3'Flank 0.23 TCGA-91-6840-01 8 144992130 144992130 C T PLEC Missense_Mutation p.M4090I 0.20 probably_damaging(0.997) TCGA-91-6840-01 8 144992966 144992966 C T PLEC Missense_Mutation p.E3812K 0.16 possibly_damaging(0.642) TCGA-91-6840-01 8 26237273 26237273 C T BNIP3L 5'Flank 0.33 TCGA-91-6840-01 8 54141989 54141989 G A OPRK1 Silent p.F337F 0.09 TCGA-91-6840-01 9 130581094 130581094 G C ENG Silent p.L443L 0.18 TCGA-91-6840-01 9 13121878 13121878 C T MPDZ Silent p.L1697L 0.19 TCGA-91-6840-01 9 139302345 139302345 C G SDCCAG3 Missense_Mutation p.R112T 0.11 deleterious(0.01) benign(0.003) TCGA-91-6840-01 9 139697160 139697160 C T CCDC183 Silent p.L196L 0.24 TCGA-91-6840-01 9 19372102 19372102 G A DENND4C Silent p.Q1887Q 0.28 TCGA-91-6840-01 9 37746696 37746696 G A FRMPD1 Missense_Mutation p.R1556H 0.23 deleterious(0.03) benign(0.099) TCGA-91-6840-01 9 893951 893951 G A DMRT1 Missense_Mutation p.S193N 0.54 deleterious(0) probably_damaging(1) TCGA-91-6840-01 X 64139010 64139010 G T ZC4H2 Missense_Mutation p.A158E 0.56 tolerated(0.23) possibly_damaging(0.874) TCGA-91-6840-01 X 78011031 78011031 C G LPAR4 Missense_Mutation p.S222C 0.31 tolerated(0.19) benign(0.004) TCGA-91-6847-01 10 103530084 103530084 A G FGF8 3'UTR 0.56 TCGA-91-6847-01 10 134179056 134179056 T G LRRC27 Splice_Site p.X472_splice 0.11 TCGA-91-6847-01 10 72195117 72195117 G A AC022532.1 Missense_Mutation p.V22I 0.68 benign(0.205) TCGA-91-6847-01 10 75673358 75673358 G A PLAU Silent p.R174R 0.13 TCGA-91-6847-01 10 82049168 82049168 C T MAT1A Silent p.P4P 0.30 TCGA-91-6847-01 11 118047142 118047142 T A SCN2B Missense_Mutation p.H2L 0.13 tolerated_low_confidence(0.55) benign(0.006) TCGA-91-6847-01 11 123988563 123988563 A C VWA5A Missense_Mutation p.E76A 0.65 deleterious(0) possibly_damaging(0.817) TCGA-91-6847-01 11 18134789 18134789 T C SAA3P RNA 0.17 TCGA-91-6847-01 11 55890553 55890553 G C OR8H3 Missense_Mutation p.Q235H 0.24 tolerated(0.32) benign(0.008) TCGA-91-6847-01 11 57080491 57080491 A G TNKS1BP1 Silent p.D557D 0.26 TCGA-91-6847-01 11 5862730 5862730 C T OR52E6 Nonsense_Mutation p.W133* 0.21 TCGA-91-6847-01 11 59225216 59225216 C T OR4D6 Silent p.P261P 0.32 TCGA-91-6847-01 11 62288527 62288527 G A AHNAK Silent p.I4454I 0.06 TCGA-91-6847-01 11 65272326 65272326 A C MALAT1 RNA 0.19 TCGA-91-6847-01 12 10233993 10233993 G A CLEC1A Silent p.L78L 0.15 TCGA-91-6847-01 12 116446313 116446313 A G MED13L Silent p.S635S 0.16 TCGA-91-6847-01 12 77220764 77220764 T C ZDHHC17 Missense_Mutation p.I325T 0.04 tolerated(0.59) benign(0.001) TCGA-91-6847-01 13 36748974 36748974 C G SOHLH2 Missense_Mutation p.R302P 0.05 deleterious(0) probably_damaging(1) TCGA-91-6847-01 13 48916758 48916758 G - RB1 Frame_Shift_Del p.E97Nfs*14 0.49 TCGA-91-6847-01 13 52686454 52686454 G A NEK5 Missense_Mutation p.L88F 0.06 deleterious(0) probably_damaging(1) TCGA-91-6847-01 13 73355908 73355908 G C DIS3 Silent p.R21R 0.57 TCGA-91-6847-01 14 20389038 20389038 C G OR4K5 Silent p.T91T 0.05 TCGA-91-6847-01 14 70125247 70125247 C T KIAA0247 5'UTR 0.37 TCGA-91-6847-01 14 81965702 81965702 C T SEL1L Intron 0.31 TCGA-91-6847-01 15 43398195 43398195 G T UBR1 Missense_Mutation p.T9N 0.62 tolerated_low_confidence(0.48) benign(0.011) TCGA-91-6847-01 15 49089914 49089914 C T CEP152 Missense_Mutation p.E69K 0.08 tolerated(0.14) possibly_damaging(0.447) TCGA-91-6847-01 15 86687016 86687016 C T AGBL1 Missense_Mutation p.P22S 0.27 tolerated(0.78) benign(0.002) TCGA-91-6847-01 16 1828259 1828259 C T SPSB3 Missense_Mutation p.R123H 0.15 deleterious(0) probably_damaging(0.995) TCGA-91-6847-01 16 20702350 20702350 T A ACSM1 Missense_Mutation p.Y54F 0.10 deleterious(0.01) benign(0.055) TCGA-91-6847-01 16 53191330 53191330 T C CHD9 Silent p.H443H 0.16 TCGA-91-6847-01 16 78062031 78062031 T C CLEC3A Missense_Mutation p.I57T 0.16 deleterious(0) benign(0.281) TCGA-91-6847-01 17 10366250 10366250 C T MYH4 Missense_Mutation p.A314T 0.36 tolerated(0.46) benign(0.15) TCGA-91-6847-01 17 16612212 16612212 G A CCDC144A Missense_Mutation p.E281K 0.33 tolerated(0.54) benign(0.176) TCGA-91-6847-01 17 27016420 27016420 G C SUPT6H Missense_Mutation p.E1061D 0.23 deleterious(0.01) probably_damaging(0.968) TCGA-91-6847-01 17 29647511 29647511 T A EVI2A 5'UTR 0.25 TCGA-91-6847-01 17 4634777 4634777 G C MED11 5'UTR 0.11 TCGA-91-6847-01 17 61950686 61950686 G A CSH2 Silent p.S8S 0.36 TCGA-91-6847-01 17 61994726 61994726 G A GH1 Silent p.V199V 0.23 TCGA-91-6847-01 17 72287186 72287186 T A DNAI2 Missense_Mutation p.L213Q 0.16 deleterious(0) probably_damaging(0.914) TCGA-91-6847-01 17 7579358 7579358 C A TP53 Missense_Mutation p.R110L 0.75 deleterious(0.04) possibly_damaging(0.898) TCGA-91-6847-01 18 42531615 42531615 G A SETBP1 Silent p.A770A 0.24 TCGA-91-6847-01 18 47796361 47796361 C T MBD1 Intron 0.10 TCGA-91-6847-01 18 72187372 72187372 C T CNDP2 3'UTR 0.42 TCGA-91-6847-01 18 77733657 77733657 A G TXNL4A 3'UTR 0.08 TCGA-91-6847-01 19 17756535 17756535 C G UNC13A Silent p.T768T 0.08 TCGA-91-6847-01 19 39899162 39899162 G C ZFP36 Silent p.L274L 0.10 TCGA-91-6847-01 19 50208490 50208490 G A CPT1C Missense_Mutation p.R300H 0.11 tolerated(0.07) probably_damaging(0.956) TCGA-91-6847-01 19 57176150 57176150 C T ZNF835 Silent p.A139A 0.33 TCGA-91-6847-01 19 8130962 8130962 G A FBN3 Silent p.G2757G 0.10 TCGA-91-6847-01 1 111857983 111857983 G T CHIA Missense_Mutation p.D136Y 0.45 deleterious(0) probably_damaging(0.998) TCGA-91-6847-01 1 145586632 145586632 C A NUDT17 Missense_Mutation p.W315L 0.07 tolerated_low_confidence(0.54) benign(0) TCGA-91-6847-01 1 145586633 145586633 A T NUDT17 Missense_Mutation p.W315R 0.06 tolerated_low_confidence(0.69) benign(0) TCGA-91-6847-01 1 155349869 155349869 G A ASH1L Missense_Mutation p.P2048S 0.24 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-91-6847-01 1 19633532 19633532 A G AKR7A2 Missense_Mutation p.F251S 0.12 deleterious(0) probably_damaging(0.997) TCGA-91-6847-01 1 209807939 209807939 G A LAMB3 Silent p.F139F 0.18 TCGA-91-6847-01 1 212798521 212798521 A C FAM71A Missense_Mutation p.H101P 0.27 tolerated(0.19) benign(0.129) TCGA-91-6847-01 1 237947335 237947335 A G RYR2 Missense_Mutation p.H4108R 0.12 probably_damaging(0.966) TCGA-91-6847-01 1 24668675 24668675 A G GRHL3 Missense_Mutation p.N373S 0.08 tolerated(0.35) benign(0.16) TCGA-91-6847-01 1 38227383 38227383 G A EPHA10 Missense_Mutation p.P182S 0.55 deleterious(0.01) probably_damaging(0.998) TCGA-91-6847-01 1 62740052 62740052 G T KANK4 Missense_Mutation p.P242T 0.26 deleterious(0.04) benign(0.012) TCGA-91-6847-01 1 75596347 75596347 A C LHX8 5'UTR 0.06 TCGA-91-6847-01 20 644541 644541 G T SCRT2 Nonsense_Mutation p.S233* 0.71 TCGA-91-6847-01 21 43783495 43783496 - G TFF1 Frame_Shift_Ins p.R36Pfs*2 0.12 TCGA-91-6847-01 21 43896056 43896056 C A RSPH1 Nonsense_Mutation p.E277* 0.09 TCGA-91-6847-01 22 40217072 40217072 G T ENTHD1 Missense_Mutation p.A253E 0.28 tolerated(0.53) benign(0.004) TCGA-91-6847-01 22 45283868 45283868 C T PHF21B Nonsense_Mutation p.W391* 0.25 TCGA-91-6847-01 2 120003328 120003328 G C STEAP3 Missense_Mutation p.V96L 0.28 tolerated(0.47) benign(0.017) TCGA-91-6847-01 2 175260394 175260394 A T CIR1 5'UTR 0.15 TCGA-91-6847-01 2 39514010 39514010 C G MAP4K3 Missense_Mutation p.E524Q 0.21 tolerated(0.28) benign(0.051) TCGA-91-6847-01 2 63712095 63712095 T C WDPCP Missense_Mutation p.N94D 0.05 deleterious(0) probably_damaging(0.936) TCGA-91-6847-01 2 72360161 72360161 G A CYP26B1 Silent p.F379F 0.20 TCGA-91-6847-01 3 110845158 110845158 G C PVRL3 Missense_Mutation p.D349H 0.16 tolerated(0.18) probably_damaging(0.934) TCGA-91-6847-01 3 112642489 112642489 T A CD200R1 3'UTR 0.31 TCGA-91-6847-01 3 123983428 123983428 C T KALRN Missense_Mutation p.T114M 0.49 deleterious(0.02) possibly_damaging(0.789) TCGA-91-6847-01 3 125786931 125786931 C G SLC41A3 Missense_Mutation p.E44D 0.06 tolerated(0.34) benign(0.006) TCGA-91-6847-01 3 126201146 126201146 G A UROC1 3'UTR 0.27 TCGA-91-6847-01 3 153905608 153905608 G A ARHGEF26 Missense_Mutation p.R541Q 0.52 deleterious(0) possibly_damaging(0.818) TCGA-91-6847-01 3 183756208 183756208 G A HTR3D Missense_Mutation p.A311T 0.47 deleterious(0.03) possibly_damaging(0.752) TCGA-91-6847-01 3 188124020 188124024 ACACA - LPP Frame_Shift_Del p.Q39Afs*14 0.19 TCGA-91-6847-01 3 19436748 19436748 G C KCNH8 Missense_Mutation p.W374C 0.39 deleterious(0) probably_damaging(1) TCGA-91-6847-01 3 41795941 41795941 A C ULK4 Missense_Mutation p.S745A 0.07 deleterious(0.05) possibly_damaging(0.601) TCGA-91-6847-01 4 128565010 128565010 G T INTU Missense_Mutation p.V161L 0.55 deleterious(0.01) benign(0.377) TCGA-91-6847-01 4 46334683 46334683 G C GABRA2 Silent p.V68V 0.23 TCGA-91-6847-01 4 71099895 71099895 C T FDCSP Silent p.S83S 0.25 TCGA-91-6847-01 5 107197409 107197409 G A FBXL17 3'UTR 0.13 TCGA-91-6847-01 6 146262927 146262927 T C SHPRH Silent p.V774V 0.51 TCGA-91-6847-01 6 28963438 28963438 C A ZNF311 Missense_Mutation p.Q447H 0.04 deleterious(0) possibly_damaging(0.547) TCGA-91-6847-01 6 35773429 35773429 A G LHFPL5 5'UTR 0.29 TCGA-91-6847-01 6 36507865 36507865 C A STK38 Nonsense_Mutation p.E39* 0.07 TCGA-91-6847-01 7 106797681 106797681 G A PRKAR2B Silent p.S345S 0.48 TCGA-91-6847-01 7 107335138 107335138 T C SLC26A4 Missense_Mutation p.W472R 0.05 deleterious(0) probably_damaging(1) TCGA-91-6847-01 7 120990539 120990539 T A FAM3C Silent p.G220G 0.47 TCGA-91-6847-01 7 150936506 150936506 G A SMARCD3 Silent p.A458A 0.36 TCGA-91-6847-01 7 44553240 44553240 C T NPC1L1 Missense_Mutation p.V1296I 0.47 tolerated(0.16) benign(0.021) TCGA-91-6847-01 7 6063250 6063250 C T AIMP2 Silent p.A297A 0.28 TCGA-91-6847-01 8 10468680 10468680 C T RP1L1 Silent p.A976A 0.65 TCGA-91-6847-01 8 114389013 114389013 C G CSMD3 Intron 0.16 TCGA-91-6847-01 8 124156985 124156985 G A TBC1D31 Missense_Mutation p.R955H 0.69 tolerated(1) benign(0) TCGA-91-6847-01 8 124413288 124413288 T G ATAD2 5'Flank 0.11 TCGA-91-6847-01 8 133811015 133811015 C T PHF20L1 Intron 0.26 TCGA-91-6847-01 8 139189617 139189617 A C FAM135B Missense_Mutation p.L359R 0.04 tolerated(0.36) benign(0.01) TCGA-91-6847-01 8 141559311 141559311 C G AGO2 Missense_Mutation p.G497A 0.07 tolerated(0.12) benign(0.422) TCGA-91-6847-01 8 145111554 145111554 C T OPLAH Missense_Mutation p.R604H 0.09 tolerated(0.18) benign(0.006) TCGA-91-6847-01 8 69434041 69434041 T G C8orf34 Missense_Mutation p.V258G 0.32 tolerated(0.33) benign(0.205) TCGA-91-6847-01 8 86392932 86392932 G T CA2 Nonsense_Mutation p.E233* 0.18 TCGA-91-6847-01 8 95895049 95895049 C G CCNE2 Missense_Mutation p.L301F 0.17 tolerated(0.17) benign(0.343) TCGA-91-6847-01 8 99101611 99101611 G A C8orf47 Silent p.E122E 0.07 TCGA-91-6847-01 X 123587298 123587298 C A TENM1 Silent p.G1331G 0.25 TCGA-91-6848-01 10 104687115 104687115 G A CNNM2 Intron 0.37 TCGA-91-6848-01 10 121692629 121692629 A G SEC23IP Missense_Mutation p.I957M 0.26 deleterious(0) probably_damaging(0.997) TCGA-91-6848-01 10 127429682 127429682 T C EDRF1 Silent p.N761N 0.43 TCGA-91-6848-01 10 134017364 134017364 G T DPYSL4 Silent p.A520A 0.25 TCGA-91-6848-01 10 134660746 134660746 G T TTC40 Missense_Mutation p.P2011Q 0.45 tolerated(0.64) benign(0.288) TCGA-91-6848-01 10 15145628 15145628 G C RPP38 Silent p.T105T 0.39 TCGA-91-6848-01 10 15713616 15713616 C A ITGA8 Missense_Mutation p.G278V 0.44 deleterious(0.01) possibly_damaging(0.847) TCGA-91-6848-01 10 22209831 22209831 G A DNAJC1 Missense_Mutation p.R145W 0.11 deleterious(0) probably_damaging(1) TCGA-91-6848-01 10 25861770 25861770 C T GPR158 Silent p.I569I 0.36 TCGA-91-6848-01 10 26849032 26849032 A G APBB1IP Splice_Site p.X386_splice 0.39 TCGA-91-6848-01 10 28233208 28233208 A T ARMC4 Silent p.V562V 0.47 TCGA-91-6848-01 10 35477238 35477238 A G CREM Missense_Mutation p.T174A 0.34 tolerated(0.18) benign(0.018) TCGA-91-6848-01 10 38343994 38343994 G C ZNF33A Missense_Mutation p.L314F 0.43 tolerated(0.18) possibly_damaging(0.824) TCGA-91-6848-01 10 43615622 43615622 G A RET Missense_Mutation p.E901K 0.29 deleterious(0) possibly_damaging(0.823) TCGA-91-6848-01 10 50902620 50902620 C A C10orf53 Intron 0.40 TCGA-91-6848-01 10 5782339 5782339 G C FAM208B Missense_Mutation p.V736L 0.10 deleterious(0) possibly_damaging(0.696) TCGA-91-6848-01 10 60549113 60549113 T A BICC1 Missense_Mutation p.I231K 0.25 deleterious(0) possibly_damaging(0.623) TCGA-91-6848-01 10 60998461 60998461 G - PHYHIPL Frame_Shift_Del p.V198Ffs*28 0.15 TCGA-91-6848-01 10 62634756 62634756 C A RHOBTB1 Missense_Mutation p.V591L 0.44 tolerated(0.32) benign(0.011) TCGA-91-6848-01 10 73047481 73047481 G T UNC5B Missense_Mutation p.G287V 0.28 deleterious(0.02) probably_damaging(1) TCGA-91-6848-01 10 76603032 76603032 C A KAT6B Silent p.L139L 0.47 TCGA-91-6848-01 10 81841615 81841615 C G TMEM254 Missense_Mutation p.Q36E 0.39 tolerated(0.49) benign(0.009) TCGA-91-6848-01 10 88415953 88415953 G T OPN4 Silent p.T62T 0.42 TCGA-91-6848-01 10 88912122 88912122 A C FAM35A Silent p.T337T 0.38 TCGA-91-6848-01 10 96802700 96802700 C A CYP2C8 Missense_Mutation p.V366L 0.38 tolerated(1) benign(0.002) TCGA-91-6848-01 10 99133640 99133640 C A RRP12 Missense_Mutation p.A604S 0.40 tolerated(0.64) benign(0.023) TCGA-91-6848-01 11 101347148 101347148 G C TRPC6 Missense_Mutation p.A543G 0.20 deleterious(0) probably_damaging(0.999) TCGA-91-6848-01 11 108032341 108032341 C G NPAT Missense_Mutation p.E1158Q 0.06 tolerated(0.1) possibly_damaging(0.809) TCGA-91-6848-01 11 108302505 108302505 G T C11orf65 Missense_Mutation p.R48S 0.14 tolerated(0.19) benign(0.174) TCGA-91-6848-01 11 110450063 110450063 T A ARHGAP20 3'UTR 0.36 TCGA-91-6848-01 11 113848584 113848584 G C HTR3A Missense_Mutation p.R59S 0.17 deleterious(0.05) benign(0.287) TCGA-91-6848-01 11 114183169 114183169 G T NNMT Silent p.L255L 0.33 TCGA-91-6848-01 11 118374110 118374110 C G KMT2A Silent p.P2501P 0.11 TCGA-91-6848-01 11 118773263 118773263 C G BCL9L Missense_Mutation p.E397Q 0.26 possibly_damaging(0.838) TCGA-91-6848-01 11 119290763 119290763 C T THY1 Missense_Mutation p.R124K 0.30 tolerated(1) benign(0.007) TCGA-91-6848-01 11 121383744 121383744 C T SORL1 Silent p.V324V 0.28 TCGA-91-6848-01 11 122647771 122647771 C T UBASH3B Silent p.P85P 0.18 TCGA-91-6848-01 11 122726461 122726461 C T CRTAM Silent p.L183L 0.34 TCGA-91-6848-01 11 124135698 124135698 A G OR8G5 Missense_Mutation p.S326G 0.29 deleterious(0) possibly_damaging(0.898) TCGA-91-6848-01 11 126081368 126081368 C A RPUSD4 Nonsense_Mutation p.E56* 0.25 TCGA-91-6848-01 11 1263179 1263179 C T MUC5B Missense_Mutation p.T1690I 0.42 unknown(0) TCGA-91-6848-01 11 1271063 1271063 C A MUC5B Missense_Mutation p.S4318Y 0.33 benign(0.1) TCGA-91-6848-01 11 1271064 1271064 C A MUC5B Silent p.S4318S 0.32 TCGA-91-6848-01 11 128709094 128709094 T G KCNJ1 Silent p.R368R 0.32 TCGA-91-6848-01 11 129999018 129999018 G A APLP2 Missense_Mutation p.A458T 0.13 tolerated(0.12) probably_damaging(0.979) TCGA-91-6848-01 11 18159718 18159718 A T MRGPRX3 Nonstop_Mutation p.*323Cext*20 0.34 TCGA-91-6848-01 11 284284 284284 G A NLRP6 Silent p.L752L 0.52 TCGA-91-6848-01 11 4154860 4154860 A T RRM1 Missense_Mutation p.Q658L 0.52 tolerated_low_confidence(0.14) benign(0.001) TCGA-91-6848-01 11 43465625 43465625 G A TTC17 Missense_Mutation p.R844H 0.38 deleterious(0) probably_damaging(0.998) TCGA-91-6848-01 11 44639739 44639739 T C CD82 Missense_Mutation p.Y156H 0.11 tolerated(0.44) benign(0.008) TCGA-91-6848-01 11 4790646 4790646 G C OR51F1 Missense_Mutation p.L168V 0.37 tolerated(0.09) benign(0.341) TCGA-91-6848-01 11 4928886 4928886 C A OR51A7 Missense_Mutation p.A96D 0.09 deleterious(0) probably_damaging(0.958) TCGA-91-6848-01 11 51515693 51515693 G T OR4C46 Missense_Mutation p.V138L 0.25 tolerated_low_confidence(0.81) benign(0.042) TCGA-91-6848-01 11 5254109 5254109 A C HBD 3'UTR 0.32 TCGA-91-6848-01 11 549998 549998 G A LRRC56 Silent p.K141K 0.15 TCGA-91-6848-01 11 55433091 55433091 G T OR4C6 Missense_Mutation p.G150V 0.13 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-91-6848-01 11 55702995 55702995 C G OR5I1 Missense_Mutation p.L294F 0.14 tolerated(0.08) probably_damaging(0.997) TCGA-91-6848-01 11 55944440 55944440 C A OR5J2 Nonsense_Mutation p.S116* 0.34 TCGA-91-6848-01 11 56000297 56000297 A C OR5T2 Missense_Mutation p.V122G 0.09 deleterious(0.04) benign(0.033) TCGA-91-6848-01 11 56113690 56113690 C T OR8K1 Missense_Mutation p.S59F 0.35 deleterious_low_confidence(0.01) benign(0.09) TCGA-91-6848-01 11 56128025 56128025 G T OR8J1 Silent p.L101L 0.15 TCGA-91-6848-01 11 57381909 57381909 G T SERPING1 Missense_Mutation p.G453V 0.22 deleterious(0) probably_damaging(1) TCGA-91-6848-01 11 58607102 58607102 G C GLYATL2 5'UTR 0.29 TCGA-91-6848-01 11 59271159 59271159 G T OR4D11 Silent p.T37T 0.13 TCGA-91-6848-01 11 59406553 59406553 C G PATL1 Silent p.R753R 0.09 TCGA-91-6848-01 11 59406554 59406554 C G PATL1 Missense_Mutation p.R753P 0.09 deleterious(0.03) benign(0.001) TCGA-91-6848-01 11 62415525 62415525 C G INTS5 Missense_Mutation p.R676P 0.06 tolerated(0.25) probably_damaging(0.93) TCGA-91-6848-01 11 62550192 62550192 C G TAF6L Silent p.L285L 0.10 TCGA-91-6848-01 11 64697827 64697827 G A PPP2R5B Silent p.V252V 0.23 TCGA-91-6848-01 11 6478032 6478032 C T TRIM3 Silent p.S308S 0.26 TCGA-91-6848-01 11 6662532 6662532 G T DCHS1 Missense_Mutation p.R105S 0.21 deleterious(0.04) benign(0.304) TCGA-91-6848-01 11 67069117 67069117 G A ANKRD13D Missense_Mutation p.E503K 0.32 deleterious(0) benign(0.385) TCGA-91-6848-01 11 67226143 67226143 G C CABP4 3'UTR 0.23 TCGA-91-6848-01 11 6816161 6816161 C G OR6A2 Missense_Mutation p.S260T 0.11 tolerated(1) probably_damaging(0.999) TCGA-91-6848-01 11 69625282 69625282 G - FGF3 Frame_Shift_Del p.R171Afs*? 0.31 TCGA-91-6848-01 11 76371260 76371260 C G LRRC32 Missense_Mutation p.R459S 0.55 tolerated(0.11) benign(0.028) TCGA-91-6848-01 11 76371261 76371261 C A LRRC32 Missense_Mutation p.R459M 0.55 deleterious(0.04) benign(0.308) TCGA-91-6848-01 11 88911839 88911839 G T TYR Missense_Mutation p.D240Y 0.23 deleterious(0.02) probably_damaging(1) TCGA-91-6848-01 11 96124867 96124867 G T JRKL Missense_Mutation p.D352Y 0.19 deleterious(0.02) probably_damaging(0.992) TCGA-91-6848-01 12 100928704 100928704 T C NR1H4 Missense_Mutation p.L222P 0.12 deleterious(0) probably_damaging(0.973) TCGA-91-6848-01 12 101473000 101473000 C A ANO4 Silent p.R413R 0.44 TCGA-91-6848-01 12 108686033 108686033 A C CMKLR1 Missense_Mutation p.I236S 0.13 deleterious(0) probably_damaging(0.98) TCGA-91-6848-01 12 108910809 108910809 C A FICD Silent p.V20V 0.14 TCGA-91-6848-01 12 109674996 109674996 C T ACACB Silent p.H1491H 0.25 TCGA-91-6848-01 12 109678897 109678897 G A ACACB Silent p.V1611V 0.11 TCGA-91-6848-01 12 11420684 11420684 G T PRB3 Missense_Mutation p.P167T 0.16 tolerated(0.09) unknown(0) TCGA-91-6848-01 12 114404156 114404156 T A RBM19 5'Flank 0.31 TCGA-91-6848-01 12 114804159 114804159 G T TBX5 Missense_Mutation p.Q265K 0.13 deleterious(0) possibly_damaging(0.724) TCGA-91-6848-01 12 11546479 11546479 C A PRB2 Missense_Mutation p.G178V 0.23 deleterious_low_confidence(0.03) unknown(0) TCGA-91-6848-01 12 124104045 124104045 G C DDX55 Missense_Mutation p.R467T 0.11 deleterious(0) benign(0.279) TCGA-91-6848-01 12 124950728 124950728 G C NCOR2 Missense_Mutation p.D232E 0.06 unknown(0) TCGA-91-6848-01 12 14949807 14949807 C G WBP11 Missense_Mutation p.L107F 0.07 deleterious(0) unknown(0) TCGA-91-6848-01 12 20832967 20832967 A T PDE3A Missense_Mutation p.K1063M 0.26 deleterious(0.03) possibly_damaging(0.764) TCGA-91-6848-01 12 22487119 22487119 C A ST8SIA1 Missense_Mutation p.M16I 0.33 tolerated_low_confidence(0.08) benign(0.001) TCGA-91-6848-01 12 22610049 22610049 C A C2CD5 Silent p.R860R 0.34 TCGA-91-6848-01 12 24736421 24736421 A T LINC00477 RNA 0.30 TCGA-91-6848-01 12 25699310 25699310 G - IFLTD1 Frame_Shift_Del p.S164Vfs*8 0.18 TCGA-91-6848-01 12 26818865 26818865 C G ITPR2 Missense_Mutation p.R510T 0.27 deleterious(0) probably_damaging(1) TCGA-91-6848-01 12 27067511 27067511 C A ASUN Missense_Mutation p.D417Y 0.26 deleterious(0) probably_damaging(0.988) TCGA-91-6848-01 12 32764081 32764081 A G FGD4 Missense_Mutation p.K401R 0.06 tolerated(0.17) benign(0.222) TCGA-91-6848-01 12 41327572 41327572 G T CNTN1 Missense_Mutation p.A293S 0.27 tolerated(0.26) probably_damaging(0.934) TCGA-91-6848-01 12 46246464 46246464 G T ARID2 Nonsense_Mutation p.E1520* 0.13 TCGA-91-6848-01 12 49578706 49578706 C T TUBA1A 3'UTR 0.32 TCGA-91-6848-01 12 49725133 49725133 C T TROAP Silent p.G745G 0.29 TCGA-91-6848-01 12 54686781 54686781 G A NFE2 Missense_Mutation p.R167W 0.17 deleterious(0) probably_damaging(0.998) TCGA-91-6848-01 12 55820169 55820169 C G OR6C76 Missense_Mutation p.I44M 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-91-6848-01 12 56092538 56092538 G A ITGA7 Silent p.S322S 0.23 TCGA-91-6848-01 12 56230923 56230923 C T MMP19 Missense_Mutation p.R475Q 0.10 tolerated_low_confidence(1) benign(0.001) TCGA-91-6848-01 12 56661712 56661712 G C COQ10A Missense_Mutation p.R90P 0.32 deleterious(0) benign(0.161) TCGA-91-6848-01 12 57009375 57009375 C T BAZ2A Silent p.V53V 0.16 TCGA-91-6848-01 12 57560773 57560773 G T LRP1 Missense_Mutation p.W953L 0.38 probably_damaging(0.999) TCGA-91-6848-01 12 57560774 57560774 G T LRP1 Missense_Mutation p.W953C 0.39 probably_damaging(1) TCGA-91-6848-01 12 57891949 57891949 G T MARS Silent p.V260V 0.32 TCGA-91-6848-01 12 57970637 57970637 G T KIF5A Missense_Mutation p.Q764H 0.33 tolerated(0.26) benign(0.341) TCGA-91-6848-01 12 57970638 57970638 G T KIF5A Nonsense_Mutation p.E765* 0.33 TCGA-91-6848-01 12 63060977 63060977 C G PPM1H Missense_Mutation p.D460H 0.09 tolerated(0.06) probably_damaging(1) TCGA-91-6848-01 12 65762787 65762787 C A MSRB3 Silent p.T98T 0.12 TCGA-91-6848-01 12 66724946 66724946 C G HELB Missense_Mutation p.Q895E 0.08 tolerated(0.31) benign(0.017) TCGA-91-6848-01 12 70965797 70965797 C A PTPRB Silent p.V971V 0.11 TCGA-91-6848-01 12 73015531 73015531 G T TRHDE Missense_Mutation p.R847I 0.31 tolerated(0.22) benign(0.192) TCGA-91-6848-01 12 73015532 73015532 G T TRHDE Splice_Site p.X847_splice 0.33 TCGA-91-6848-01 12 7476089 7476089 G T ACSM4 Missense_Mutation p.G414V 0.18 deleterious(0) probably_damaging(0.996) TCGA-91-6848-01 12 78225437 78225437 G C NAV3 Missense_Mutation p.E66Q 0.29 tolerated_low_confidence(0.25) benign(0.1) TCGA-91-6848-01 12 81833761 81833761 G C PPFIA2 Missense_Mutation p.A212G 0.27 deleterious(0.01) benign(0.236) TCGA-91-6848-01 12 8388265 8388265 C G RP11-266K4.9 RNA 0.29 TCGA-91-6848-01 12 9264760 9264760 C A A2M Nonsense_Mutation p.E160* 0.23 TCGA-91-6848-01 12 96412590 96412590 T C LTA4H Missense_Mutation p.Y268C 0.32 deleterious(0) probably_damaging(0.996) TCGA-91-6848-01 13 102231637 102231637 G T ITGBL1 Splice_Site p.X196_splice 0.24 TCGA-91-6848-01 13 102235655 102235655 G T ITGBL1 Nonsense_Mutation p.E273* 0.15 TCGA-91-6848-01 13 113201997 113201997 C T TUBGCP3 Missense_Mutation p.V369I 0.19 tolerated(0.07) benign(0.2) TCGA-91-6848-01 13 114164584 114164584 A G TMCO3 Missense_Mutation p.Y357C 0.08 tolerated(0.17) benign(0.008) TCGA-91-6848-01 13 114782827 114782827 C T RASA3 Silent p.Q364Q 0.24 TCGA-91-6848-01 13 19751190 19751190 C A TUBA3C Missense_Mutation p.K311N 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-91-6848-01 13 20049755 20049755 A C TPTE2 Missense_Mutation p.I63S 0.22 deleterious(0.02) benign(0.15) TCGA-91-6848-01 13 25280511 25280511 G T ATP12A Silent p.L699L 0.19 TCGA-91-6848-01 13 29600946 29600946 A G MTUS2 Missense_Mutation p.Q714R 0.20 deleterious(0) possibly_damaging(0.836) TCGA-91-6848-01 13 30104757 30104757 C A SLC7A1 Nonsense_Mutation p.G208* 0.10 TCGA-91-6848-01 13 32930636 32930636 G T BRCA2 Missense_Mutation p.V2503F 0.10 deleterious(0) benign(0.419) TCGA-91-6848-01 13 39343885 39343885 G T FREM2 Missense_Mutation p.V1861L 0.11 tolerated(0.05) benign(0.16) TCGA-91-6848-01 13 39425097 39425097 C G FREM2 Silent p.P2198P 0.13 TCGA-91-6848-01 13 46658367 46658367 C A CPB2 Nonsense_Mutation p.G88* 0.35 TCGA-91-6848-01 13 49281373 49281373 G C CYSLTR2 Missense_Mutation p.M140I 0.37 tolerated(1) benign(0) TCGA-91-6848-01 13 49281374 49281374 G T CYSLTR2 Missense_Mutation p.V141F 0.38 deleterious(0) probably_damaging(0.978) TCGA-91-6848-01 13 51528088 51528088 T C RNASEH2B Silent p.T263T 0.16 TCGA-91-6848-01 13 52440107 52440107 T C CCDC70 Missense_Mutation p.F198S 0.10 deleterious(0.01) benign(0.367) TCGA-91-6848-01 13 52952470 52952470 C T THSD1 Silent p.L545L 0.27 TCGA-91-6848-01 13 52990159 52990159 T G VPS36 Missense_Mutation p.K354Q 0.36 deleterious(0.01) probably_damaging(0.939) TCGA-91-6848-01 13 70681444 70681444 C A KLHL1 Missense_Mutation p.V130L 0.16 tolerated_low_confidence(0.33) benign(0.021) TCGA-91-6848-01 13 70681445 70681445 C A KLHL1 Silent p.V129V 0.16 TCGA-91-6848-01 13 74269599 74269599 T C KLF12 3'UTR 0.27 TCGA-91-6848-01 13 77699604 77699604 C A MYCBP2 Splice_Site p.X2591_splice 0.08 TCGA-91-6848-01 13 78188089 78188089 G T SCEL Nonsense_Mutation p.G484* 0.29 TCGA-91-6848-01 13 84453891 84453891 C T SLITRK1 Silent p.R584R 0.43 TCGA-91-6848-01 13 86368433 86368433 G C SLITRK6 Nonsense_Mutation p.Y737* 0.14 TCGA-91-6848-01 13 99038060 99038060 G A FARP1 Missense_Mutation p.V251M 0.23 deleterious(0) probably_damaging(0.999) TCGA-91-6848-01 14 101201079 101201079 G A DLK1 Nonsense_Mutation p.W333* 0.19 TCGA-91-6848-01 14 101531875 101531875 C A MIR541 3'Flank 0.10 TCGA-91-6848-01 14 101531876 101531876 C A MIR541 3'Flank 0.10 TCGA-91-6848-01 14 106667615 106667615 C G IGHV3-20 Missense_Mutation p.R106T 0.17 tolerated_low_confidence(0.06) benign(0.259) TCGA-91-6848-01 14 107034728 107034728 G T IGHV5-51 3'Flank 0.09 TCGA-91-6848-01 14 107199039 107199039 A T IGHV3-72 Missense_Mutation p.S84T 0.13 deleterious_low_confidence(0.03) benign(0.062) TCGA-91-6848-01 14 107199123 107199123 C - IGHV3-72 Frame_Shift_Del p.V56Sfs*30 0.11 TCGA-91-6848-01 14 19566021 19566021 G C POTEG Missense_Mutation p.Q355H 0.05 deleterious(0.02) possibly_damaging(0.857) TCGA-91-6848-01 14 20296126 20296126 G A OR4N2 Silent p.Q173Q 0.13 TCGA-91-6848-01 14 20389409 20389409 T A OR4K5 Missense_Mutation p.V215D 0.09 deleterious(0) possibly_damaging(0.654) TCGA-91-6848-01 14 20586312 20586312 C G OR4K17 Nonsense_Mutation p.Y249* 0.16 TCGA-91-6848-01 14 20841837 20841837 C A TEP1 Missense_Mutation p.A2202S 0.23 tolerated(0.16) possibly_damaging(0.521) TCGA-91-6848-01 14 20864840 20864840 C G TEP1 Silent p.L533L 0.19 TCGA-91-6848-01 14 28734166 28734166 C A BNIP3P1 RNA 0.13 TCGA-91-6848-01 14 32621727 32621727 C T ARHGAP5 Silent p.L1392L 0.09 TCGA-91-6848-01 14 44974570 44974570 C A FSCB Nonsense_Mutation p.E541* 0.20 TCGA-91-6848-01 14 45431624 45431624 C G FAM179B 5'UTR 0.08 TCGA-91-6848-01 14 51383756 51383756 A G PYGL Missense_Mutation p.I308T 0.18 deleterious(0) probably_damaging(0.951) TCGA-91-6848-01 14 55529631 55529631 C G MAPK1IP1L Missense_Mutation p.P105R 0.17 deleterious_low_confidence(0.02) probably_damaging(0.972) TCGA-91-6848-01 14 61180565 61180565 C T SIX4 Missense_Mutation p.D636N 0.14 tolerated_low_confidence(0.07) benign(0.215) TCGA-91-6848-01 14 61517306 61517306 A G SLC38A6 Silent p.L334L 0.16 TCGA-91-6848-01 14 65008250 65008250 A T HSPA2 Missense_Mutation p.D228V 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-91-6848-01 14 72054814 72054814 G T SIPA1L1 Silent p.G75G 0.12 TCGA-91-6848-01 14 73958834 73958834 G C HEATR4 Intron 0.15 TCGA-91-6848-01 14 74823625 74823625 C A VRTN Silent p.R47R 0.12 TCGA-91-6848-01 14 75278382 75278382 G T YLPM1 Missense_Mutation p.R1763M 0.13 probably_damaging(0.993) TCGA-91-6848-01 14 95108209 95108209 G T SERPINA13P RNA 0.17 TCGA-91-6848-01 15 20663089 20663089 C A HERC2P3 RNA 0.25 TCGA-91-6848-01 15 22368701 22368701 T C OR4M2 Silent p.N42N 0.15 TCGA-91-6848-01 15 22867477 22867477 A C TUBGCP5 Missense_Mutation p.E851D 0.13 tolerated(0.06) benign(0.003) TCGA-91-6848-01 15 23931597 23931597 G T NDN Silent p.P256P 0.15 TCGA-91-6848-01 15 25479346 25479346 T C SNORD115-33 3'Flank 0.09 TCGA-91-6848-01 15 25925042 25925042 T A ATP10A Missense_Mutation p.R1316W 0.13 deleterious(0) possibly_damaging(0.474) TCGA-91-6848-01 15 25959377 25959377 C A ATP10A Missense_Mutation p.R596S 0.24 tolerated(1) benign(0.017) TCGA-91-6848-01 15 25959378 25959378 C T ATP10A Missense_Mutation p.R596K 0.24 tolerated(0.93) benign(0.012) TCGA-91-6848-01 15 26792940 26792940 T A GABRB3 Nonstop_Mutation p.*474Cext*15 0.18 TCGA-91-6848-01 15 26792980 26792980 G C GABRB3 Missense_Mutation p.S461C 0.25 tolerated(0.16) probably_damaging(1) TCGA-91-6848-01 15 26806231 26806231 G A GABRB3 Missense_Mutation p.L310F 0.23 deleterious(0.02) probably_damaging(0.989) TCGA-91-6848-01 15 32460299 32460299 C A CHRNA7 Missense_Mutation p.N412K 0.10 tolerated(0.12) benign(0.081) TCGA-91-6848-01 15 34072441 34072441 C A RYR3 Missense_Mutation p.A3056D 0.25 probably_damaging(0.999) TCGA-91-6848-01 15 35189124 35189124 C G AQR Missense_Mutation p.A812P 0.23 deleterious(0.01) probably_damaging(0.978) TCGA-91-6848-01 15 45409476 45409476 G A DUOXA2 Missense_Mutation p.A248T 0.33 tolerated(0.28) benign(0.022) TCGA-91-6848-01 15 48063837 48063837 C A SEMA6D Missense_Mutation p.S1026Y 0.12 deleterious(0) probably_damaging(0.998) TCGA-91-6848-01 15 52258168 52258168 C G LEO1 Missense_Mutation p.D198H 0.04 deleterious_low_confidence(0) possibly_damaging(0.698) TCGA-91-6848-01 15 52664365 52664365 T G MYO5A Missense_Mutation p.M925L 0.28 tolerated(0.36) benign(0.007) TCGA-91-6848-01 15 65621815 65621815 G T IGDCC3 Silent p.G706G 0.20 TCGA-91-6848-01 15 66604125 66604125 C T DIS3L Nonsense_Mutation p.Q208* 0.27 TCGA-91-6848-01 15 66845470 66845470 G T LCTL Missense_Mutation p.T350K 0.28 tolerated(0.29) probably_damaging(0.944) TCGA-91-6848-01 15 72252402 72252402 T G MYO9A Silent p.P674P 0.09 TCGA-91-6848-01 15 72459019 72459019 C A GRAMD2 Missense_Mutation p.R166L 0.25 deleterious(0.02) probably_damaging(1) TCGA-91-6848-01 15 78211390 78211390 T C RP11-114H24.7 Intron 0.33 TCGA-91-6848-01 15 80464562 80464562 T C FAH Silent p.F226F 0.10 TCGA-91-6848-01 15 81592393 81592393 C A IL16 Missense_Mutation p.P909H 0.21 tolerated(0.06) benign(0.126) TCGA-91-6848-01 16 12758697 12758697 T A CPPED1 3'UTR 0.36 TCGA-91-6848-01 16 2164199 2164199 T A PKD1 Missense_Mutation p.E942V 0.49 possibly_damaging(0.875) TCGA-91-6848-01 16 2499292 2499292 G A CCNF Missense_Mutation p.V410M 0.14 deleterious(0.01) possibly_damaging(0.839) TCGA-91-6848-01 16 2580606 2580606 G C CEMP1 Missense_Mutation p.P157A 0.25 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-91-6848-01 16 30037144 30037144 T G FAM57B Splice_Site p.X149_splice 0.07 TCGA-91-6848-01 16 30977389 30977389 G T SETD1A Silent p.P729P 0.52 TCGA-91-6848-01 16 4164527 4164527 G A ADCY9 Missense_Mutation p.S306F 0.38 deleterious(0.01) possibly_damaging(0.895) TCGA-91-6848-01 16 4835981 4835981 C A SEPT12 Missense_Mutation p.V98F 0.37 deleterious(0.02) possibly_damaging(0.836) TCGA-91-6848-01 16 51174397 51174397 G C SALL1 Missense_Mutation p.P579R 0.12 deleterious(0) possibly_damaging(0.786) TCGA-91-6848-01 16 66943 66943 G A WASH4P Silent p.I231I 0.20 TCGA-91-6848-01 16 67221375 67221375 G A EXOC3L1 Silent p.L265L 0.39 TCGA-91-6848-01 16 705355 705355 C T WDR90 Silent p.G535G 0.21 TCGA-91-6848-01 16 77398110 77398110 G T ADAMTS18 Missense_Mutation p.T316K 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-91-6848-01 16 89180747 89180747 G C ACSF3 Missense_Mutation p.R326S 0.12 deleterious(0) probably_damaging(0.994) TCGA-91-6848-01 16 89704102 89704102 G T DPEP1 Missense_Mutation p.D306Y 0.46 deleterious(0) probably_damaging(1) TCGA-91-6848-01 17 17699940 17699940 G C RAI1 Silent p.S1226S 0.37 TCGA-91-6848-01 17 17718545 17718545 C T SREBF1 Missense_Mutation p.D858N 0.39 tolerated(0.1) benign(0.363) TCGA-91-6848-01 17 21319478 21319478 A T KCNJ12 Missense_Mutation p.D275V 0.15 deleterious(0) probably_damaging(0.975) TCGA-91-6848-01 17 27308526 27308526 A G SEZ6 Missense_Mutation p.V196A 0.50 tolerated(0.94) benign(0.001) TCGA-91-6848-01 17 32646402 32646402 C G CCL8 5'UTR 0.27 TCGA-91-6848-01 17 33680129 33680129 C T SLFN11 Missense_Mutation p.R651Q 0.08 deleterious(0) probably_damaging(1) TCGA-91-6848-01 17 33689860 33689860 C A SLFN11 Missense_Mutation p.A323S 0.14 deleterious(0.01) probably_damaging(0.968) TCGA-91-6848-01 17 34001246 34001246 A T AP2B1 Missense_Mutation p.T744S 0.34 tolerated(0.76) benign(0) TCGA-91-6848-01 17 34191805 34191805 G C C17orf66 Missense_Mutation p.P137R 0.11 tolerated(0.18) benign(0.016) TCGA-91-6848-01 17 35601615 35601615 C G ACACA Missense_Mutation p.Q877H 0.06 deleterious(0.03) benign(0.002) TCGA-91-6848-01 17 35944813 35944813 C A SYNRG Missense_Mutation p.G178W 0.27 deleterious(0) possibly_damaging(0.789) TCGA-91-6848-01 17 37094922 37094922 C G FBXO47 Missense_Mutation p.V383L 0.21 tolerated(0.09) benign(0.015) TCGA-91-6848-01 17 37885642 37885642 G C MIEN1 3'UTR 0.25 TCGA-91-6848-01 17 40030157 40030157 T A ACLY Missense_Mutation p.Q850L 0.10 deleterious(0.01) benign(0.046) TCGA-91-6848-01 17 40148426 40148426 C T DNAJC7 Missense_Mutation p.G103D 0.08 deleterious(0.01) probably_damaging(0.923) TCGA-91-6848-01 17 40460323 40460323 C T STAT5A Silent p.V678V 0.12 TCGA-91-6848-01 17 40840598 40840598 G C CNTNAP1 Silent p.L475L 0.09 TCGA-91-6848-01 17 42225314 42225314 G T C17orf53 Missense_Mutation p.R48M 0.29 deleterious(0.03) possibly_damaging(0.893) TCGA-91-6848-01 17 43474300 43474300 C T ARHGAP27 Missense_Mutation p.D304N 0.33 deleterious(0.05) benign(0.159) TCGA-91-6848-01 17 4686215 4686215 G T TM4SF5 Missense_Mutation p.W154C 0.46 deleterious(0) probably_damaging(1) TCGA-91-6848-01 17 48701339 48701339 G T CACNA1G Silent p.T2044T 0.07 TCGA-91-6848-01 17 49362671 49362671 G T UTP18 Missense_Mutation p.G424C 0.32 deleterious(0) probably_damaging(0.998) TCGA-91-6848-01 17 5086545 5086545 G A ZNF594 Missense_Mutation p.T336I 0.38 deleterious(0.03) probably_damaging(0.987) TCGA-91-6848-01 17 55729473 55729473 G A MSI2 Silent p.A247A 0.10 TCGA-91-6848-01 17 56682358 56682358 G A TEX14 Silent p.I445I 0.29 TCGA-91-6848-01 17 60813751 60813751 G T MARCH10 Nonsense_Mutation p.S493* 0.14 TCGA-91-6848-01 17 66303649 66303649 T C ARSG Silent p.F5F 0.07 TCGA-91-6848-01 17 72469782 72469782 T G CD300A Missense_Mutation p.C50G 0.30 deleterious(0.01) probably_damaging(0.914) TCGA-91-6848-01 17 7578463 7578463 C G TP53 Missense_Mutation p.R156P 0.33 tolerated(0.22) probably_damaging(0.994) TCGA-91-6848-01 17 76455174 76455174 T A DNAH17 Missense_Mutation p.D3243V 0.12 benign(0.015) TCGA-91-6848-01 17 77039957 77039957 C T C1QTNF1 Intron 0.35 TCGA-91-6848-01 17 80391653 80391653 G A HEXDC Silent p.L134L 0.23 TCGA-91-6848-01 17 8053803 8053803 G A PER1 Silent p.S74S 0.09 TCGA-91-6848-01 18 14522346 14522346 G T POTEC Missense_Mutation p.A439D 0.33 tolerated(0.19) possibly_damaging(0.654) TCGA-91-6848-01 18 21474905 21474905 C G LAMA3 Missense_Mutation p.D1832E 0.27 probably_damaging(0.999) TCGA-91-6848-01 18 25593792 25593792 C A CDH2 Missense_Mutation p.G85V 0.41 deleterious(0) probably_damaging(1) TCGA-91-6848-01 18 2775815 2775815 C T SMCHD1 Silent p.V1753V 0.08 TCGA-91-6848-01 18 32834085 32834085 C T ZSCAN30 Missense_Mutation p.V272I 0.31 tolerated(0.41) benign(0.001) TCGA-91-6848-01 18 347058 347058 G T COLEC12 Silent p.L188L 0.42 TCGA-91-6848-01 18 47390530 47390530 C A MYO5B Missense_Mutation p.R1275L 0.49 tolerated(0.06) benign(0.006) TCGA-91-6848-01 18 47421320 47421320 C G MYO5B Missense_Mutation p.E1012D 0.35 tolerated(0.24) benign(0.001) TCGA-91-6848-01 18 51887022 51887022 G T C18orf54 Missense_Mutation p.S27I 0.31 deleterious(0.05) probably_damaging(0.975) TCGA-91-6848-01 18 55319833 55319833 G A ATP8B1 Silent p.F1048F 0.16 TCGA-91-6848-01 18 59483688 59483688 C A RNF152 Silent p.T3T 0.21 TCGA-91-6848-01 18 61620711 61620711 G T HMSD Missense_Mutation p.A8S 0.20 tolerated(0.17) possibly_damaging(0.836) TCGA-91-6848-01 18 61650815 61650815 A G SERPINB8 Missense_Mutation p.K143E 0.20 deleterious(0.02) probably_damaging(0.949) TCGA-91-6848-01 18 67345002 67345002 T A DOK6 Missense_Mutation p.C108S 0.19 tolerated(0.44) benign(0.017) TCGA-91-6848-01 19 10200003 10200003 A T C19orf66 Intron 0.49 TCGA-91-6848-01 19 10602872 10602872 C T KEAP1 Missense_Mutation p.D236N 0.59 tolerated(0.06) benign(0.072) TCGA-91-6848-01 19 10946726 10946726 G T TMED1 Missense_Mutation p.Q48K 0.56 deleterious(0) probably_damaging(0.983) TCGA-91-6848-01 19 11651909 11651909 C G CNN1 Missense_Mutation p.H28D 0.55 deleterious(0.05) benign(0.12) TCGA-91-6848-01 19 13002648 13002648 C G GCDH Missense_Mutation p.S44W 0.42 deleterious_low_confidence(0) possibly_damaging(0.708) TCGA-91-6848-01 19 15073023 15073023 C T SLC1A6 Silent p.R242R 0.34 TCGA-91-6848-01 19 17091493 17091493 C A CPAMD8 Missense_Mutation p.G514W 0.40 deleterious(0) probably_damaging(1) TCGA-91-6848-01 19 19626702 19626702 A G NDUFA13 5'UTR 0.18 TCGA-91-6848-01 19 21720623 21720623 G C ZNF429 Missense_Mutation p.E590Q 0.30 deleterious(0.04) possibly_damaging(0.555) TCGA-91-6848-01 19 22271699 22271699 C A ZNF257 Silent p.R383R 0.45 TCGA-91-6848-01 19 2757393 2757393 C T SGTA Missense_Mutation p.S297N 0.29 tolerated(0.76) benign(0.009) TCGA-91-6848-01 19 2853054 2853054 A G ZNF555 Missense_Mutation p.M331V 0.36 tolerated(0.94) benign(0.003) TCGA-91-6848-01 19 36142133 36142133 A T COX6B1 Splice_Site 0.31 TCGA-91-6848-01 19 36940118 36940118 C T ZNF566 Missense_Mutation p.E341K 0.35 tolerated(0.1) probably_damaging(0.948) TCGA-91-6848-01 19 37369217 37369217 A G ZNF345 3'UTR 0.24 TCGA-91-6848-01 19 42626700 42626700 G A POU2F2 Silent p.A19A 0.33 TCGA-91-6848-01 19 4294587 4294587 T A TMIGD2 Missense_Mutation p.Q180L 0.05 tolerated(0.33) benign(0.018) TCGA-91-6848-01 19 43414920 43414920 G C PSG6 Missense_Mutation p.P173R 0.05 tolerated(0.23) benign(0.037) TCGA-91-6848-01 19 43982285 43982285 C A PHLDB3 Splice_Site p.X568_splice 0.19 TCGA-91-6848-01 19 47423737 47423737 T C ARHGAP35 Missense_Mutation p.I602T 0.42 deleterious(0) possibly_damaging(0.727) TCGA-91-6848-01 19 49671848 49671848 G T TRPM4 Silent p.P217P 0.53 TCGA-91-6848-01 19 49878264 49878264 C T DKKL1 Silent p.L236L 0.31 TCGA-91-6848-01 19 50374892 50374892 T C AKT1S1 Missense_Mutation p.Y200C 0.30 deleterious(0) probably_damaging(0.977) TCGA-91-6848-01 19 50940738 50940738 C T MYBPC2 Nonsense_Mutation p.Q158* 0.33 TCGA-91-6848-01 19 54392896 54392896 C G PRKCG Missense_Mutation p.P97R 0.35 tolerated(0.06) benign(0.013) TCGA-91-6848-01 19 54515511 54515511 C G CACNG6 3'UTR 0.25 TCGA-91-6848-01 19 56733416 56733416 C A ZSCAN5A Missense_Mutation p.S340I 0.19 deleterious(0.04) possibly_damaging(0.451) TCGA-91-6848-01 19 56925402 56925402 G T ZNF583 Missense_Mutation p.R28S 0.40 deleterious(0) benign(0.119) TCGA-91-6848-01 19 5712005 5712005 A C LONP1 Missense_Mutation p.I216S 0.30 deleterious(0.01) possibly_damaging(0.833) TCGA-91-6848-01 19 57327425 57327425 C A PEG3 Silent p.G795G 0.29 TCGA-91-6848-01 19 9089319 9089319 T A MUC16 Silent p.S832S 0.49 TCGA-91-6848-01 1 115527385 115527385 C A SYCP1 Missense_Mutation p.Q867K 0.19 tolerated(0.21) benign(0.006) TCGA-91-6848-01 1 116940558 116940558 C G ATP1A1 Silent p.T674T 0.22 TCGA-91-6848-01 1 117146448 117146448 G A IGSF3 Silent p.S494S 0.07 TCGA-91-6848-01 1 117957422 117957422 G C MAN1A2 Missense_Mutation p.R248T 0.12 tolerated(0.15) benign(0.001) TCGA-91-6848-01 1 11867187 11867187 G C CLCN6 Splice_Site p.X30_splice 0.15 TCGA-91-6848-01 1 12438582 12438582 C T VPS13D Missense_Mutation p.A3673V 0.19 benign(0.01) TCGA-91-6848-01 1 12837494 12837494 G A PRAMEF12 Missense_Mutation p.G402R 0.50 tolerated(0.64) benign(0.022) TCGA-91-6848-01 1 12943150 12943150 G T PRAMEF4 Missense_Mutation p.D22E 0.22 tolerated(0.07) possibly_damaging(0.661) TCGA-91-6848-01 1 12955552 12955552 C A PRAMEF10 Missense_Mutation p.A43S 0.61 deleterious(0) probably_damaging(0.999) TCGA-91-6848-01 1 12955553 12955553 C A PRAMEF10 Missense_Mutation p.E42D 0.61 tolerated(0.09) benign(0.413) TCGA-91-6848-01 1 144866667 144866667 C G PDE4DIP Missense_Mutation p.E1859Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-91-6848-01 1 144882515 144882515 C G PDE4DIP Silent p.V1168V 0.13 TCGA-91-6848-01 1 145015957 145015957 C A RP11-326G21.1 5'Flank 0.08 TCGA-91-6848-01 1 150444442 150444442 G C RPRD2 Silent p.T1006T 0.34 TCGA-91-6848-01 1 152277782 152277782 G T FLG Missense_Mutation p.H3194N 0.11 unknown(0) TCGA-91-6848-01 1 153913380 153913380 C A DENND4B Silent p.S442S 0.36 TCGA-91-6848-01 1 153925803 153925803 G A CRTC2 Silent p.P182P 0.08 TCGA-91-6848-01 1 154544348 154544348 A T CHRNB2 Missense_Mutation p.Q350L 0.36 deleterious(0.01) benign(0.102) TCGA-91-6848-01 1 154573642 154573642 G A ADAR Silent p.P492P 0.08 TCGA-91-6848-01 1 154680722 154680722 G T KCNN3 Silent p.I642I 0.06 TCGA-91-6848-01 1 155903447 155903447 G A KIAA0907 Missense_Mutation p.P78S 0.33 tolerated(0.07) benign(0.178) TCGA-91-6848-01 1 1563074 1563074 G T MIB2 Missense_Mutation p.R630S 0.71 tolerated(0.05) benign(0.287) TCGA-91-6848-01 1 156641864 156641864 C T NES Missense_Mutation p.E706K 0.37 deleterious(0.05) benign(0.063) TCGA-91-6848-01 1 156844387 156844387 C T NTRK1 Missense_Mutation p.P407L 0.18 tolerated(0.1) probably_damaging(0.999) TCGA-91-6848-01 1 156883775 156883775 C A PEAR1 Missense_Mutation p.P949T 0.64 deleterious(0) probably_damaging(0.911) TCGA-91-6848-01 1 158576618 158576618 C T OR10Z1 Silent p.L130L 0.34 TCGA-91-6848-01 1 158632514 158632514 G A SPTA1 Silent p.P814P 0.31 TCGA-91-6848-01 1 158632624 158632624 G T SPTA1 Missense_Mutation p.L778M 0.18 deleterious(0.01) probably_damaging(1) TCGA-91-6848-01 1 158736335 158736335 G T OR6N1 Missense_Mutation p.F46L 0.10 tolerated(0.12) benign(0.047) TCGA-91-6848-01 1 159558186 159558186 A T APCS Silent p.S120S 0.31 TCGA-91-6848-01 1 161719819 161719819 G A DUSP12 Nonsense_Mutation p.W76* 0.10 TCGA-91-6848-01 1 16255917 16255917 C T SPEN Missense_Mutation p.A1061V 0.08 benign(0.005) TCGA-91-6848-01 1 168215720 168215720 C G SFT2D2 3'UTR 0.31 TCGA-91-6848-01 1 16901119 16901119 G C NBPF1 Nonsense_Mutation p.S754* 0.12 TCGA-91-6848-01 1 169292414 169292414 C A NME7 Silent p.L73L 0.09 TCGA-91-6848-01 1 169366523 169366523 C T CCDC181 Missense_Mutation p.C440Y 0.13 tolerated(1) possibly_damaging(0.523) TCGA-91-6848-01 1 169699613 169699613 C T SELE Missense_Mutation p.M225I 0.11 tolerated(0.09) benign(0.006) TCGA-91-6848-01 1 169993679 169993679 C T KIFAP3 Silent p.R300R 0.08 TCGA-91-6848-01 1 173010797 173010797 C A TNFSF18 Missense_Mutation p.V104L 0.34 tolerated(0.16) benign(0) TCGA-91-6848-01 1 173503725 173503725 C A SLC9C2 Missense_Mutation p.M624I 0.27 tolerated(0.46) benign(0.007) TCGA-91-6848-01 1 173542361 173542361 G T SLC9C2 Missense_Mutation p.P336T 0.13 tolerated(0.21) benign(0.002) TCGA-91-6848-01 1 173799862 173799862 G C DARS2 Missense_Mutation p.G120A 0.36 deleterious(0) probably_damaging(1) TCGA-91-6848-01 1 174274246 174274246 G T RABGAP1L Missense_Mutation p.Q482H 0.34 tolerated(0.08) possibly_damaging(0.497) TCGA-91-6848-01 1 175365886 175365886 T A TNR Missense_Mutation p.E345V 0.23 tolerated(0.07) possibly_damaging(0.507) TCGA-91-6848-01 1 176760585 176760585 G C PAPPA2 Missense_Mutation p.V1663L 0.28 tolerated(0.42) benign(0.033) TCGA-91-6848-01 1 17965158 17965158 G T ARHGEF10L Missense_Mutation p.R715S 0.58 deleterious(0) benign(0.277) TCGA-91-6848-01 1 186151329 186151329 T A HMCN1 Missense_Mutation p.C5442S 0.08 probably_damaging(0.942) TCGA-91-6848-01 1 196227468 196227468 T C KCNT2 Missense_Mutation p.R1023G 0.30 tolerated(0.09) probably_damaging(0.989) TCGA-91-6848-01 1 196646790 196646790 G T CFH Missense_Mutation p.K204N 0.29 tolerated(0.1) benign(0.01) TCGA-91-6848-01 1 203150365 203150365 C G CHI3L1 Missense_Mutation p.W212C 0.37 deleterious(0) probably_damaging(0.997) TCGA-91-6848-01 1 204009446 204009446 G A LINC00303 RNA 0.33 TCGA-91-6848-01 1 204214786 204214786 C T PLEKHA6 Silent p.R663R 0.10 TCGA-91-6848-01 1 205117405 205117405 C A DSTYK Missense_Mutation p.G844C 0.32 deleterious(0) probably_damaging(1) TCGA-91-6848-01 1 210411426 210411426 G T SERTAD4 Missense_Mutation p.G41W 0.41 deleterious(0.01) probably_damaging(0.991) TCGA-91-6848-01 1 210856730 210856730 G T KCNH1 Missense_Mutation p.L955I 0.11 tolerated_low_confidence(0.09) benign(0.164) TCGA-91-6848-01 1 214816616 214816616 A G CENPF Silent p.L1645L 0.07 TCGA-91-6848-01 1 214822111 214822111 G T CENPF Nonsense_Mutation p.E2642* 0.27 TCGA-91-6848-01 1 215408281 215408281 C T KCNK2 Silent p.A358A 0.35 TCGA-91-6848-01 1 220088749 220088749 C A SLC30A10 3'UTR 0.28 TCGA-91-6848-01 1 221054644 221054644 C T HLX Missense_Mutation p.S234F 0.36 deleterious(0) possibly_damaging(0.851) TCGA-91-6848-01 1 228492894 228492894 G A OBSCN Silent p.Q4779Q 0.13 TCGA-91-6848-01 1 229568613 229568613 A G ACTA1 Silent p.G48G 0.33 TCGA-91-6848-01 1 229666032 229666032 C A ABCB10 Missense_Mutation p.G520V 0.33 deleterious(0) possibly_damaging(0.781) TCGA-91-6848-01 1 229750098 229750098 G A TAF5L Silent p.A44A 0.09 TCGA-91-6848-01 1 232539223 232539223 G A SIPA1L2 Silent p.G1637G 0.35 TCGA-91-6848-01 1 234744702 234744702 C A IRF2BP2 Missense_Mutation p.R180L 0.36 deleterious(0.03) possibly_damaging(0.726) TCGA-91-6848-01 1 237550680 237550680 G C RYR2 Missense_Mutation p.G226R 0.13 probably_damaging(0.985) TCGA-91-6848-01 1 237823342 237823342 T C RYR2 Silent p.L2756L 0.38 TCGA-91-6848-01 1 237972326 237972326 T C RYR2 Silent p.D4808D 0.23 TCGA-91-6848-01 1 245927431 245927431 T C SMYD3 Missense_Mutation p.H366R 0.29 deleterious(0) probably_damaging(0.996) TCGA-91-6848-01 1 247162696 247162696 C A ZNF695 Missense_Mutation p.R71S 0.30 tolerated(0.36) benign(0.227) TCGA-91-6848-01 1 247835568 247835568 G T OR13G1 Missense_Mutation p.P259H 0.28 deleterious(0) benign(0.206) TCGA-91-6848-01 1 247835569 247835569 G T OR13G1 Missense_Mutation p.P259T 0.28 deleterious(0.01) probably_damaging(0.935) TCGA-91-6848-01 1 248263328 248263328 T C OR2L13 Silent p.C217C 0.19 TCGA-91-6848-01 1 248308451 248308451 T G OR2M5 Translation_Start_Site p.M1? 0.27 deleterious(0) possibly_damaging(0.905) TCGA-91-6848-01 1 248458447 248458447 G A OR2T12 Missense_Mutation p.S145L 0.28 deleterious(0.03) benign(0.001) TCGA-91-6848-01 1 248525707 248525707 C A OR2T4 Silent p.S275S 0.32 TCGA-91-6848-01 1 25783313 25783313 G T TMEM57 Missense_Mutation p.A215S 0.45 tolerated(0.79) benign(0.197) TCGA-91-6848-01 1 27101678 27101678 A T ARID1A Nonsense_Mutation p.K1654* 0.33 TCGA-91-6848-01 1 33245840 33245840 C A YARS Missense_Mutation p.V394L 0.31 tolerated(0.71) benign(0.008) TCGA-91-6848-01 1 37346247 37346247 C G GRIK3 Missense_Mutation p.D180H 0.13 deleterious(0) probably_damaging(0.986) TCGA-91-6848-01 1 38227347 38227347 C A EPHA10 Missense_Mutation p.D194Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-91-6848-01 1 54418024 54418024 C T LRRC42 Silent p.L118L 0.15 TCGA-91-6848-01 1 57409447 57409447 C G C8B Missense_Mutation p.G386R 0.10 deleterious(0.04) benign(0.422) TCGA-91-6848-01 1 57425747 57425747 A C C8B Missense_Mutation p.C65W 0.29 deleterious(0) probably_damaging(1) TCGA-91-6848-01 1 5947499 5947499 C A NPHP4 Missense_Mutation p.V778L 0.51 deleterious(0.02) benign(0.22) TCGA-91-6848-01 1 59978093 59978093 G C FGGY Missense_Mutation p.A261P 0.11 deleterious(0) probably_damaging(1) TCGA-91-6848-01 1 60125890 60125890 G C FGGY Splice_Site p.X432_splice 0.28 TCGA-91-6848-01 1 64603134 64603134 A G ROR1 Missense_Mutation p.M189V 0.45 tolerated(1) benign(0.002) TCGA-91-6848-01 1 65270692 65270692 G C RAVER2 Missense_Mutation p.E426Q 0.40 deleterious(0.01) possibly_damaging(0.812) TCGA-91-6848-01 1 67371051 67371051 C G WDR78 Missense_Mutation p.A60P 0.24 tolerated_low_confidence(0.35) benign(0.086) TCGA-91-6848-01 1 68895527 68895527 C A RPE65 Nonsense_Mutation p.E512* 0.49 TCGA-91-6848-01 1 70397219 70397219 G T LRRC7 Missense_Mutation p.R188I 0.28 deleterious(0.05) probably_damaging(0.997) TCGA-91-6848-01 1 70505400 70505400 A G LRRC7 Missense_Mutation p.E1260G 0.11 deleterious(0.05) benign(0.08) TCGA-91-6848-01 1 75679479 75679479 C A SLC44A5 Splice_Site p.X625_splice 0.48 TCGA-91-6848-01 1 76397843 76397843 G T ASB17 Missense_Mutation p.P45Q 0.41 deleterious_low_confidence(0.01) probably_damaging(0.937) TCGA-91-6848-01 1 86048467 86048467 C G CYR61 Silent p.V296V 0.28 TCGA-91-6848-01 20 2777886 2777886 C T CPXM1 Missense_Mutation p.G262R 0.56 deleterious(0.02) benign(0.013) TCGA-91-6848-01 20 29976934 29976934 C G DEFB119 Missense_Mutation p.R54P 0.23 deleterious(0.01) probably_damaging(0.975) TCGA-91-6848-01 20 30450378 30450378 T G DUSP15 Missense_Mutation p.Q144P 0.30 tolerated(0.26) benign(0.043) TCGA-91-6848-01 20 35882723 35882723 G C GHRH Missense_Mutation p.N66K 0.16 tolerated(0.11) possibly_damaging(0.451) TCGA-91-6848-01 20 37534627 37534627 G T PPP1R16B Missense_Mutation p.A238S 0.25 deleterious(0.03) possibly_damaging(0.713) TCGA-91-6848-01 20 41100998 41100998 C A PTPRT Missense_Mutation p.R453L 0.29 tolerated(0.6) possibly_damaging(0.873) TCGA-91-6848-01 20 43043174 43043174 G A HNF4A Missense_Mutation p.G174S 0.19 tolerated(0.52) benign(0.034) TCGA-91-6848-01 20 43585112 43585112 C A TOMM34 Nonsense_Mutation p.E48* 0.09 TCGA-91-6848-01 20 44444350 44444350 G A UBE2C Silent p.R129R 0.33 TCGA-91-6848-01 20 44664091 44664091 G T SLC12A5 Missense_Mutation p.A89S 0.26 tolerated(0.16) possibly_damaging(0.713) TCGA-91-6848-01 20 47989887 47989887 G T KCNB1 Missense_Mutation p.S737Y 0.09 tolerated_low_confidence(1) possibly_damaging(0.73) TCGA-91-6848-01 20 51872111 51872111 A G TSHZ2 Missense_Mutation p.H705R 0.35 deleterious(0) probably_damaging(0.996) TCGA-91-6848-01 20 61937242 61937242 T A COL20A1 Missense_Mutation p.L116Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-91-6848-01 20 62730025 62730025 G A OPRL1 Missense_Mutation p.C329Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-91-6848-01 21 22839027 22839027 C A NCAM2 Silent p.I585I 0.36 TCGA-91-6848-01 21 31023452 31023452 C A GRIK1 Missense_Mutation p.D314Y 0.22 deleterious(0.01) benign(0.299) TCGA-91-6848-01 21 32185358 32185358 C G KRTAP8-1 Missense_Mutation p.A61P 0.06 tolerated_low_confidence(0.18) probably_damaging(0.975) TCGA-91-6848-01 21 32253439 32253439 T A KRTAP11-1 Silent p.G135G 0.29 TCGA-91-6848-01 21 32253637 32253637 G T KRTAP11-1 Silent p.T69T 0.28 TCGA-91-6848-01 21 33073348 33073348 G A SCAF4 Missense_Mutation p.A246V 0.10 possibly_damaging(0.626) TCGA-91-6848-01 21 34958426 34958426 A - DONSON Frame_Shift_Del p.V155Gfs*23 0.14 TCGA-91-6848-01 21 41457578 41457578 G T DSCAM Silent p.A1361A 0.13 TCGA-91-6848-01 21 45825862 45825862 T C TRPM2 Missense_Mutation p.M911T 0.05 deleterious(0) benign(0.031) TCGA-91-6848-01 21 45949807 45949807 C A TSPEAR Missense_Mutation p.G222C 0.60 deleterious(0) probably_damaging(0.996) TCGA-91-6848-01 21 46900712 46900712 A G COL18A1 Silent p.G697G 0.47 TCGA-91-6848-01 21 47648484 47648484 T A LSS Missense_Mutation p.K15M 0.50 deleterious(0.03) benign(0.04) TCGA-91-6848-01 21 47773050 47773050 C A PCNT Missense_Mutation p.R497S 0.26 benign(0.065) TCGA-91-6848-01 21 9907370 9907370 G T TEKT4P2 RNA 0.64 TCGA-91-6848-01 22 19230340 19230340 G C CLTCL1 Silent p.A213A 0.06 TCGA-91-6848-01 22 24579184 24579184 T C SUSD2 Missense_Mutation p.V79A 0.41 tolerated(0.16) benign(0.013) TCGA-91-6848-01 22 26165023 26165023 C A MYO18B Missense_Mutation p.S380R 0.56 tolerated_low_confidence(0.24) benign(0.009) TCGA-91-6848-01 22 29695819 29695819 G A EWSR1 Missense_Mutation p.G642R 0.40 tolerated_low_confidence(0.17) unknown(0) TCGA-91-6848-01 22 30057207 30057207 C T NF2 Missense_Mutation p.T230I 0.47 deleterious(0) benign(0.35) TCGA-91-6848-01 22 30127238 30127238 C T ZMAT5 Silent p.L163L 0.38 TCGA-91-6848-01 22 38121864 38121864 C T TRIOBP Missense_Mutation p.P1101S 0.43 deleterious_low_confidence(0.02) possibly_damaging(0.744) TCGA-91-6848-01 22 39358102 39358102 G C APOBEC3A Splice_Site p.X157_splice 0.48 TCGA-91-6848-01 22 41574498 41574498 G A EP300 Silent p.Q2261Q 0.23 TCGA-91-6848-01 22 43203106 43203106 A G ARFGAP3 Missense_Mutation p.F462L 0.22 deleterious(0.02) possibly_damaging(0.529) TCGA-91-6848-01 22 45312398 45312398 G T PHF21B Missense_Mutation p.P109H 0.34 deleterious(0) probably_damaging(0.959) TCGA-91-6848-01 22 46654017 46654017 C T PKDREJ Missense_Mutation p.D1735N 0.31 tolerated(0.47) benign(0.138) TCGA-91-6848-01 2 102490607 102490607 C T MAP4K4 Missense_Mutation p.S900L 0.41 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-91-6848-01 2 102956636 102956636 G C IL1RL1 Missense_Mutation p.L117F 0.54 deleterious(0.05) benign(0.325) TCGA-91-6848-01 2 103095375 103095375 G T SLC9A4 Missense_Mutation p.G112C 0.26 deleterious(0.01) benign(0.067) TCGA-91-6848-01 2 109988056 109988056 G - SH3RF3 Frame_Shift_Del p.V289Cfs*69 0.31 TCGA-91-6848-01 2 128467294 128467294 T G WDR33 Silent p.R1149R 0.16 TCGA-91-6848-01 2 131976361 131976361 T C POTEE Missense_Mutation p.M129T 0.20 tolerated_low_confidence(0.16) benign(0) TCGA-91-6848-01 2 155711602 155711602 A G KCNJ3 Missense_Mutation p.Y428C 0.27 tolerated_low_confidence(0.53) benign(0.004) TCGA-91-6848-01 2 166626886 166626886 G C GALNT3 Missense_Mutation p.P109A 0.22 deleterious(0.02) possibly_damaging(0.452) TCGA-91-6848-01 2 166740392 166740392 C T TTC21B Missense_Mutation p.S1199N 0.23 deleterious(0) possibly_damaging(0.57) TCGA-91-6848-01 2 167318959 167318959 C A SCN7A Missense_Mutation p.W341C 0.32 deleterious(0.01) probably_damaging(0.988) TCGA-91-6848-01 2 167992571 167992571 A C XIRP2 Missense_Mutation p.E187D 0.14 possibly_damaging(0.641) TCGA-91-6848-01 2 168106018 168106018 C A XIRP2 Missense_Mutation p.P2706T 0.27 probably_damaging(0.959) TCGA-91-6848-01 2 170048464 170048464 C A LRP2 Missense_Mutation p.W2970C 0.28 probably_damaging(0.986) TCGA-91-6848-01 2 177034076 177034076 C A HOXD3 Silent p.A78A 0.41 TCGA-91-6848-01 2 179485223 179485223 G T TTN Missense_Mutation p.P15342H 0.28 TCGA-91-6848-01 2 180851422 180851422 C A CWC22 Missense_Mutation p.R69L 0.28 deleterious(0.01) possibly_damaging(0.604) TCGA-91-6848-01 2 189868834 189868834 G A COL3A1 Missense_Mutation p.G930R 0.38 probably_damaging(0.999) TCGA-91-6848-01 2 198363420 198363420 C T HSPD1 Silent p.V51V 0.10 TCGA-91-6848-01 2 201477458 201477458 G T AOX1 Nonsense_Mutation p.G464* 0.36 TCGA-91-6848-01 2 201477459 201477459 G T AOX1 Missense_Mutation p.G464V 0.37 deleterious(0) probably_damaging(1) TCGA-91-6848-01 2 204599666 204599666 G T CD28 3'UTR 0.32 TCGA-91-6848-01 2 21235104 21235104 A G APOB Missense_Mutation p.S1546P 0.53 probably_damaging(0.994) TCGA-91-6848-01 2 225379485 225379485 C G CUL3 Missense_Mutation p.R128P 0.22 deleterious(0) possibly_damaging(0.662) TCGA-91-6848-01 2 228882992 228882992 G T SPHKAP Missense_Mutation p.Q860K 0.20 tolerated(0.09) benign(0.001) TCGA-91-6848-01 2 231742238 231742238 C T ITM2C Missense_Mutation p.R229W 0.09 deleterious(0) possibly_damaging(0.632) TCGA-91-6848-01 2 238243434 238243434 G T COL6A3 Missense_Mutation p.L3022I 0.33 unknown(0) TCGA-91-6848-01 2 241631673 241631673 G T AQP12A Missense_Mutation p.K102N 0.35 deleterious(0.02) possibly_damaging(0.694) TCGA-91-6848-01 2 241631679 241631679 G C AQP12A Silent p.A104A 0.16 TCGA-91-6848-01 2 241808281 241808281 C A AGXT 5'UTR 0.38 TCGA-91-6848-01 2 242054766 242054766 T C PASK Silent p.K1045K 0.30 TCGA-91-6848-01 2 25013390 25013390 G C PTRHD1 Missense_Mutation p.H105D 0.12 deleterious(0) probably_damaging(0.986) TCGA-91-6848-01 2 28467646 28467646 G C BRE Splice_Site p.X284_splice 0.28 TCGA-91-6848-01 2 37247938 37247938 C - HEATR5B Frame_Shift_Del p.A1299Hfs*39 0.33 TCGA-91-6848-01 2 42720020 42720020 C T KCNG3 Missense_Mutation p.D208N 0.53 tolerated(0.09) benign(0.031) TCGA-91-6848-01 2 43934572 43934572 G T PLEKHH2 Silent p.L618L 0.39 TCGA-91-6848-01 2 44170944 44170944 C A LRPPRC Missense_Mutation p.A796S 0.07 tolerated(0.06) probably_damaging(0.975) TCGA-91-6848-01 2 63282686 63282686 G T OTX1 Silent p.G100G 0.55 TCGA-91-6848-01 2 72359633 72359633 C T CYP26B1 Missense_Mutation p.R421Q 0.43 tolerated(0.23) possibly_damaging(0.459) TCGA-91-6848-01 2 74173969 74173969 C T DGUOK Missense_Mutation p.P127S 0.42 tolerated(0.47) benign(0.074) TCGA-91-6848-01 2 74757512 74757512 G T HTRA2 Missense_Mutation p.G127C 0.50 deleterious(0.02) possibly_damaging(0.898) TCGA-91-6848-01 2 86479178 86479178 G C REEP1 Missense_Mutation p.L114V 0.22 tolerated(0.06) benign(0.012) TCGA-91-6848-01 2 89156832 89156832 G A IGKC 3'UTR 0.35 TCGA-91-6848-01 2 89160406 89160406 T C IGKJ4 Missense_Mutation p.E10G 0.07 benign(0.257) TCGA-91-6848-01 2 90044210 90044210 G T IGKV2D-24 Missense_Mutation p.R44M 0.14 deleterious(0) possibly_damaging(0.701) TCGA-91-6848-01 2 9770361 9770361 T C YWHAQ Missense_Mutation p.K74R 0.18 tolerated_low_confidence(0.12) possibly_damaging(0.512) TCGA-91-6848-01 2 99012367 99012367 C T CNGA3 Missense_Mutation p.T245M 0.26 deleterious(0.05) benign(0.029) TCGA-91-6848-01 3 100455464 100455464 A T TFG Missense_Mutation p.S209C 0.25 deleterious(0) probably_damaging(0.978) TCGA-91-6848-01 3 118865024 118865024 G A C3orf30 5'UTR 0.32 TCGA-91-6848-01 3 121217499 121217499 C A POLQ Missense_Mutation p.D660Y 0.30 deleterious(0) probably_damaging(0.971) TCGA-91-6848-01 3 121435663 121435663 T C GOLGB1 Silent p.L403L 0.13 TCGA-91-6848-01 3 122004013 122004013 T A CASR Missense_Mutation p.V1081D 0.32 deleterious_low_confidence(0) benign(0.247) TCGA-91-6848-01 3 123010042 123010042 T C ADCY5 Missense_Mutation p.E1082G 0.11 deleterious(0.03) probably_damaging(0.994) TCGA-91-6848-01 3 123427595 123427595 G T MYLK Missense_Mutation p.A697D 0.31 deleterious(0) benign(0.149) TCGA-91-6848-01 3 123633813 123633813 T A CCDC14 Missense_Mutation p.Q851L 0.25 deleterious(0.03) possibly_damaging(0.607) TCGA-91-6848-01 3 126211342 126211342 T G UROC1 Silent p.A569A 0.17 TCGA-91-6848-01 3 127540640 127540640 T - MGLL Frame_Shift_Del p.R18Gfs*58 0.17 TCGA-91-6848-01 3 129270038 129270038 C A H1FOO Missense_Mutation p.A299D 0.30 tolerated(0.05) possibly_damaging(0.621) TCGA-91-6848-01 3 141682740 141682740 C A TFDP2 Silent p.P266P 0.21 TCGA-91-6848-01 3 148459658 148459658 T - AGTR1 Frame_Shift_Del p.I279Mfs*12 0.15 TCGA-91-6848-01 3 150644580 150644580 T G CLRN1 3'Flank 0.17 TCGA-91-6848-01 3 152880554 152880554 G A RAP2B Silent p.V24V 0.14 TCGA-91-6848-01 3 165548510 165548538 GAAGCCTGGAAAACTTTGATCTATGTTCT - BCHE Frame_Shift_Del p.Q95Pfs*11 0.10 TCGA-91-6848-01 3 170736374 170736374 C A SLC2A2 Silent p.V18V 0.08 TCGA-91-6848-01 3 183390119 183390119 A T KLHL24 Silent p.L483L 0.17 TCGA-91-6848-01 3 183823738 183823738 C A HTR3E Silent p.T328T 0.12 TCGA-91-6848-01 3 186256733 186256733 G C CRYGS Missense_Mutation p.Q97E 0.42 deleterious(0) possibly_damaging(0.638) TCGA-91-6848-01 3 186395387 186395387 C T HRG Silent p.H431H 0.13 TCGA-91-6848-01 3 186461656 186461656 A G KNG1 3'Flank 0.47 TCGA-91-6848-01 3 186937957 186937957 A G MASP1 Missense_Mutation p.W668R 0.42 deleterious(0) probably_damaging(1) TCGA-91-6848-01 3 196235126 196235126 C G SMCO1 Missense_Mutation p.E93Q 0.07 tolerated(0.17) benign(0.439) TCGA-91-6848-01 3 35770885 35770885 C G ARPP21 Missense_Mutation p.A405G 0.28 deleterious(0.04) benign(0.007) TCGA-91-6848-01 3 37095446 37095446 T C LRRFIP2 Missense_Mutation p.T688A 0.13 deleterious(0.05) benign(0.222) TCGA-91-6848-01 3 37369958 37369958 G A GOLGA4 Silent p.L2019L 0.15 TCGA-91-6848-01 3 37369959 37369959 A T GOLGA4 Missense_Mutation p.M2020L 0.15 benign(0.127) TCGA-91-6848-01 3 39179822 39179822 C T TTC21A Missense_Mutation p.A1254V 0.24 deleterious(0) probably_damaging(0.999) TCGA-91-6848-01 3 39229939 39229939 G T XIRP1 Missense_Mutation p.P333Q 0.24 tolerated(0.05) possibly_damaging(0.685) TCGA-91-6848-01 3 39374285 39374285 C A CCR8 Missense_Mutation p.L155M 0.34 tolerated(0.09) probably_damaging(0.955) TCGA-91-6848-01 3 47161790 47161790 C A SETD2 Missense_Mutation p.G1446W 0.47 tolerated(0.07) probably_damaging(0.998) TCGA-91-6848-01 3 48629395 48629395 G A COL7A1 Silent p.I431I 0.20 TCGA-91-6848-01 3 49135892 49135892 T C QARS Missense_Mutation p.S660G 0.42 tolerated(0.06) benign(0.063) TCGA-91-6848-01 3 52326297 52326297 G A GLYCTK Missense_Mutation p.D243N 0.12 deleterious(0) probably_damaging(1) TCGA-91-6848-01 3 52426902 52426902 G C DNAH1 Missense_Mutation p.E3445D 0.07 benign(0.131) TCGA-91-6848-01 3 56173652 56173652 A G ERC2 Missense_Mutation p.L453S 0.27 deleterious(0) probably_damaging(0.978) TCGA-91-6848-01 3 65367594 65367594 C A MAGI1 Missense_Mutation p.G887C 0.35 deleterious(0) probably_damaging(1) TCGA-91-6848-01 4 100264151 100264151 A G ADH1C Missense_Mutation p.M210T 0.13 benign(0.215) TCGA-91-6848-01 4 100522817 100522817 C A MTTP Silent p.I430I 0.12 TCGA-91-6848-01 4 10447119 10447119 T C ZNF518B Silent p.L278L 0.10 TCGA-91-6848-01 4 111398162 111398162 G A ENPEP Missense_Mutation p.G198S 0.25 deleterious(0.04) possibly_damaging(0.532) TCGA-91-6848-01 4 114276323 114276323 G A ANK2 Missense_Mutation p.M2183I 0.28 benign(0.087) TCGA-91-6848-01 4 114278911 114278911 G A ANK2 Missense_Mutation p.S3046N 0.11 probably_damaging(0.999) TCGA-91-6848-01 4 114438768 114438769 TC A CAMK2D Frame_Shift_Del p.D216Lfs*26 0.12 TCGA-91-6848-01 4 126239216 126239216 G A FAT4 Silent p.L550L 0.15 TCGA-91-6848-01 4 1369241 1369241 G C UVSSA Missense_Mutation p.A460P 0.10 deleterious(0.02) probably_damaging(0.996) TCGA-91-6848-01 4 154626088 154626088 C T TLR2 Missense_Mutation p.R677W 0.38 deleterious(0) probably_damaging(1) TCGA-91-6848-01 4 15565064 15565064 A G CC2D2A Missense_Mutation p.Q1034R 0.27 deleterious(0) probably_damaging(0.958) TCGA-91-6848-01 4 156632249 156632249 G T GUCY1A3 Missense_Mutation p.R311M 0.45 deleterious(0.05) probably_damaging(0.943) TCGA-91-6848-01 4 156632250 156632250 G T GUCY1A3 Missense_Mutation p.R311S 0.42 deleterious(0.01) benign(0.37) TCGA-91-6848-01 4 159569729 159569729 C A RXFP1 Missense_Mutation p.T612K 0.48 tolerated(0.57) benign(0.038) TCGA-91-6848-01 4 169102871 169102871 T C ANXA10 Silent p.Y254Y 0.17 TCGA-91-6848-01 4 173873319 173873319 C A GALNTL6 Nonsense_Mutation p.C427* 0.28 TCGA-91-6848-01 4 183675829 183675829 G C TENM3 Missense_Mutation p.E1437Q 0.44 deleterious(0.03) benign(0.007) TCGA-91-6848-01 4 187172915 187172915 C G KLKB1 Missense_Mutation p.F348L 0.46 tolerated(0.71) benign(0.075) TCGA-91-6848-01 4 1955223 1955223 C T WHSC1 Silent p.S770S 0.07 TCGA-91-6848-01 4 26622245 26622245 C G TBC1D19 Missense_Mutation p.P77A 0.12 tolerated(0.47) benign(0.077) TCGA-91-6848-01 4 36231157 36231158 AC - ARAP2 5'UTR 0.21 TCGA-91-6848-01 4 39846292 39846292 T C PDS5A Missense_Mutation p.T1178A 0.09 tolerated(0.77) benign(0.001) TCGA-91-6848-01 4 48622678 48622678 G T FRYL Silent p.R98R 0.14 TCGA-91-6848-01 4 54257193 54257193 T A FIP1L1 Missense_Mutation p.Y175N 0.17 deleterious(0) probably_damaging(1) TCGA-91-6848-01 4 55981508 55981508 G T KDR Missense_Mutation p.N143K 0.16 tolerated(1) probably_damaging(0.954) TCGA-91-6848-01 4 647709 647709 C A PDE6B Silent p.A260A 0.09 TCGA-91-6848-01 4 65275006 65275006 T A TECRL Missense_Mutation p.T22S 0.19 tolerated_low_confidence(0.67) benign(0.003) TCGA-91-6848-01 4 678311 678311 G C MFSD7 Silent p.A267A 0.10 TCGA-91-6848-01 4 68528875 68528875 C A UBA6 Missense_Mutation p.S340I 0.24 deleterious(0.01) benign(0.036) TCGA-91-6848-01 4 69101752 69101752 C A TMPRSS11B Missense_Mutation p.K92N 0.29 deleterious(0.03) possibly_damaging(0.736) TCGA-91-6848-01 4 70825785 70825785 G T CSN2 Missense_Mutation p.L22I 0.12 tolerated(0.12) unknown(0) TCGA-91-6848-01 4 72222846 72222846 G T SLC4A4 Silent p.L224L 0.16 TCGA-91-6848-01 4 76882454 76882454 C A SDAD1 Missense_Mutation p.A397S 0.25 tolerated(0.15) benign(0.023) TCGA-91-6848-01 4 76882455 76882455 A T SDAD1 Missense_Mutation p.N396K 0.25 deleterious(0) probably_damaging(0.931) TCGA-91-6848-01 4 77676228 77676228 C T SHROOM3 Missense_Mutation p.P1531L 0.28 tolerated(0.31) benign(0.214) TCGA-91-6848-01 4 77816752 77816752 C G SOWAHB Missense_Mutation p.E751Q 0.06 tolerated(0.05) benign(0.403) TCGA-91-6848-01 4 84015946 84015946 T C PLAC8 Splice_Site p.X82_splice 0.29 TCGA-91-6848-01 4 85642574 85642574 C A WDFY3 Missense_Mutation p.E2531D 0.14 deleterious(0.01) probably_damaging(0.971) TCGA-91-6848-01 4 87703365 87703365 G T PTPN13 Missense_Mutation p.V1997L 0.07 tolerated(0.75) benign(0.003) TCGA-91-6848-01 4 90171017 90171017 C A GPRIN3 Missense_Mutation p.G82V 0.12 deleterious(0) possibly_damaging(0.8) TCGA-91-6848-01 4 90844353 90844353 G T MMRN1 Missense_Mutation p.Q295H 0.31 deleterious(0) probably_damaging(0.999) TCGA-91-6848-01 4 90844354 90844354 G T MMRN1 Missense_Mutation p.A296S 0.31 deleterious(0.01) possibly_damaging(0.713) TCGA-91-6848-01 4 94006358 94006358 C A GRID2 Missense_Mutation p.H153N 0.16 tolerated(1) benign(0) TCGA-91-6848-01 5 109091072 109091072 G T MAN2A1 Missense_Mutation p.W250C 0.39 deleterious(0) probably_damaging(0.998) TCGA-91-6848-01 5 109181676 109181676 T G MAN2A1 Silent p.A937A 0.21 TCGA-91-6848-01 5 126993490 126993490 G A CTXN3 3'UTR 0.19 TCGA-91-6848-01 5 127673778 127673778 C A FBN2 Missense_Mutation p.R1170M 0.48 deleterious(0) probably_damaging(0.985) TCGA-91-6848-01 5 127710335 127710335 C A FBN2 Missense_Mutation p.G694V 0.34 deleterious(0) probably_damaging(0.969) TCGA-91-6848-01 5 140176121 140176121 C A PCDHA2 Missense_Mutation p.D524E 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-91-6848-01 5 140182020 140182020 T G PCDHA3 Missense_Mutation p.L413R 0.46 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-91-6848-01 5 140201762 140201762 A G PCDHA5 Silent p.R134R 0.44 TCGA-91-6848-01 5 140515122 140515122 C A PCDHB5 Missense_Mutation p.P36T 0.40 tolerated_low_confidence(0.47) benign(0.028) TCGA-91-6848-01 5 140712092 140712092 C A PCDHGA1 Missense_Mutation p.P614Q 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-91-6848-01 5 140720458 140720458 G T PCDHGA2 Missense_Mutation p.Q640H 0.42 deleterious_low_confidence(0.01) benign(0.35) TCGA-91-6848-01 5 140731435 140731435 C A PCDHGB1 Silent p.P536P 0.35 TCGA-91-6848-01 5 140857238 140857238 G C PCDHGC3 Missense_Mutation p.V519L 0.19 tolerated(1) benign(0.004) TCGA-91-6848-01 5 1420756 1420756 G A SLC6A3 Silent p.V285V 0.11 TCGA-91-6848-01 5 168199814 168199814 C T SLIT3 Silent p.Q477Q 0.38 TCGA-91-6848-01 5 169139223 169139223 T G DOCK2 Missense_Mutation p.L552R 0.39 deleterious(0) possibly_damaging(0.74) TCGA-91-6848-01 5 173473753 173473753 G T NSG2 5'UTR 0.39 TCGA-91-6848-01 5 176707799 176707799 G T NSD1 Silent p.R1952R 0.29 TCGA-91-6848-01 5 178416024 178416024 G T GRM6 Silent p.L422L 0.26 TCGA-91-6848-01 5 178418464 178418464 G A GRM6 Missense_Mutation p.A273V 0.40 deleterious(0) probably_damaging(0.999) TCGA-91-6848-01 5 24593394 24593394 C A CDH10 Missense_Mutation p.G69V 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-91-6848-01 5 31302334 31302334 G T CDH6 Missense_Mutation p.G310C 0.13 deleterious(0) probably_damaging(0.957) TCGA-91-6848-01 5 35910048 35910048 G C CAPSL Missense_Mutation p.Q149E 0.08 tolerated(0.12) benign(0.405) TCGA-91-6848-01 5 42718700 42718700 G T GHR Missense_Mutation p.R364I 0.19 deleterious(0) probably_damaging(0.976) TCGA-91-6848-01 5 50073902 50073902 G T PARP8 Splice_Site p.X173_splice 0.26 TCGA-91-6848-01 5 99921902 99921902 G C FAM174A 3'UTR 0.25 TCGA-91-6848-01 6 112451149 112451149 G A LAMA4 Silent p.Y1354Y 0.12 TCGA-91-6848-01 6 118228983 118228983 G A SLC35F1 Missense_Mutation p.E32K 0.48 tolerated(0.2) benign(0.017) TCGA-91-6848-01 6 121491651 121491651 C G TBC1D32 Intron 0.31 TCGA-91-6848-01 6 125139608 125139608 T C NKAIN2 Missense_Mutation p.M204T 0.31 tolerated(0.25) probably_damaging(0.954) TCGA-91-6848-01 6 126211940 126211940 G T NCOA7 Missense_Mutation p.A694S 0.39 deleterious(0.04) probably_damaging(0.986) TCGA-91-6848-01 6 127837551 127837551 A G SOGA3 Missense_Mutation p.V70A 0.18 tolerated_low_confidence(0.4) benign(0) TCGA-91-6848-01 6 132891774 132891774 G A TAAR6 Missense_Mutation p.C105Y 0.15 deleterious(0) probably_damaging(0.991) TCGA-91-6848-01 6 134491563 134491563 T A SGK1 Missense_Mutation p.N475I 0.29 tolerated(0.47) benign(0) TCGA-91-6848-01 6 137322846 137322846 C T IL20RA Missense_Mutation p.C504Y 0.10 tolerated(0.53) benign(0.002) TCGA-91-6848-01 6 149847909 149847909 C A PPIL4 Nonsense_Mutation p.G228* 0.34 TCGA-91-6848-01 6 151358234 151358234 T C MTHFD1L Missense_Mutation p.I943T 0.14 deleterious(0) probably_damaging(0.99) TCGA-91-6848-01 6 160831778 160831778 C G SLC22A3 Missense_Mutation p.P292R 0.22 deleterious(0) probably_damaging(1) TCGA-91-6848-01 6 160831779 160831779 C T SLC22A3 Silent p.P292P 0.24 TCGA-91-6848-01 6 160899605 160899605 C A LPAL2 RNA 0.13 TCGA-91-6848-01 6 161969904 161969904 G T PARK2 Silent p.G355G 0.12 TCGA-91-6848-01 6 166575985 166575985 T A T Missense_Mutation p.H285L 0.10 deleterious(0) possibly_damaging(0.548) TCGA-91-6848-01 6 167549845 167549845 C A CCR6 Missense_Mutation p.Q43K 0.14 tolerated(0.52) benign(0.001) TCGA-91-6848-01 6 169008869 169008869 G A SMOC2 Missense_Mutation p.R297K 0.29 deleterious(0.03) possibly_damaging(0.623) TCGA-91-6848-01 6 170844361 170844361 T C PSMB1 Missense_Mutation p.I225V 0.08 tolerated(0.46) benign(0.005) TCGA-91-6848-01 6 25773793 25773793 C A SLC17A4 Missense_Mutation p.P293Q 0.42 deleterious(0) probably_damaging(1) TCGA-91-6848-01 6 27839778 27839778 C G HIST1H3I Missense_Mutation p.E106Q 0.22 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-91-6848-01 6 28121309 28121309 G T ZKSCAN8 Missense_Mutation p.Q417H 0.11 tolerated(0.29) possibly_damaging(0.612) TCGA-91-6848-01 6 28228121 28228121 T A NKAPL Silent p.I324I 0.22 TCGA-91-6848-01 6 29080100 29080100 C T OR2J3 Missense_Mutation p.H145Y 0.12 tolerated(1) benign(0.018) TCGA-91-6848-01 6 31504170 31504170 T G DDX39B Intron 0.42 TCGA-91-6848-01 6 31513941 31513941 T C ATP6V1G2 Missense_Mutation p.E43G 0.09 deleterious(0.03) benign(0.01) TCGA-91-6848-01 6 31779044 31779044 C T HSPA1L Missense_Mutation p.D236N 0.09 deleterious_low_confidence(0) probably_damaging(1) TCGA-91-6848-01 6 31939364 31939364 G A DXO Missense_Mutation p.P30L 0.13 tolerated(0.05) benign(0.305) TCGA-91-6848-01 6 33143790 33143790 C A COL11A2 Intron 0.11 TCGA-91-6848-01 6 34741353 34741353 G C SNRPC 3'UTR 0.09 TCGA-91-6848-01 6 35211468 35211468 C A SCUBE3 Nonsense_Mutation p.C669* 0.24 TCGA-91-6848-01 6 38874088 38874088 G A DNAH8 Missense_Mutation p.A2868T 0.35 benign(0.155) TCGA-91-6848-01 6 41185581 41185581 G T TREML3P RNA 0.29 TCGA-91-6848-01 6 42931185 42931185 G C GNMT Missense_Mutation p.L238F 0.23 tolerated(0.63) benign(0) TCGA-91-6848-01 6 42952393 42952393 G C PPP2R5D 5'UTR 0.35 TCGA-91-6848-01 6 42986681 42986681 G A KLHDC3 Missense_Mutation p.D301N 0.13 tolerated(0.08) benign(0.049) TCGA-91-6848-01 6 47549760 47549760 C T CD2AP Missense_Mutation p.A356V 0.16 tolerated(0.32) benign(0.003) TCGA-91-6848-01 6 49585865 49585865 C T RHAG Silent p.T136T 0.22 TCGA-91-6848-01 6 49986794 49986794 C T DEFB110 Missense_Mutation p.E34K 0.21 tolerated(0.09) benign(0.042) TCGA-91-6848-01 6 50016295 50016295 T A DEFB112 Missense_Mutation p.T24S 0.10 tolerated(0.07) benign(0.292) TCGA-91-6848-01 6 50016296 50016296 G A DEFB112 Silent p.S23S 0.10 TCGA-91-6848-01 6 51524232 51524232 G T PKHD1 Silent p.A3564A 0.29 TCGA-91-6848-01 6 66204904 66204904 G T EYS Missense_Mutation p.H134N 0.44 tolerated_low_confidence(0.18) benign(0.058) TCGA-91-6848-01 6 70639421 70639421 T C COL19A1 Silent p.P165P 0.11 TCGA-91-6848-01 6 72678748 72678748 A C RIMS1 Missense_Mutation p.Q76P 0.24 tolerated(0.2) probably_damaging(0.921) TCGA-91-6848-01 6 72993758 72993758 G A RIMS1 Missense_Mutation p.R1164K 0.14 tolerated(0.44) probably_damaging(0.983) TCGA-91-6848-01 6 73905064 73905064 G T KCNQ5 Missense_Mutation p.R928L 0.15 tolerated_low_confidence(0.16) benign(0.005) TCGA-91-6848-01 6 75890769 75890769 T A COL12A1 Missense_Mutation p.T684S 0.13 benign(0.011) TCGA-91-6848-01 6 76018589 76018589 G C FILIP1 Missense_Mutation p.R1154G 0.18 deleterious(0) probably_damaging(0.979) TCGA-91-6848-01 6 82924358 82924358 C G IBTK Missense_Mutation p.G597A 0.17 tolerated(0.11) benign(0.098) TCGA-91-6848-01 6 83848671 83848671 A C DOPEY1 Missense_Mutation p.Q1637P 0.23 deleterious(0) probably_damaging(0.998) TCGA-91-6848-01 6 96988410 96988410 G C UFL1 Splice_Site p.X387_splice 0.20 TCGA-91-6848-01 6 99282812 99282813 CG T POU3F2 Frame_Shift_Del p.E22Sfs*176 0.23 TCGA-91-6848-01 7 107710162 107710162 C A LAMB4 Missense_Mutation p.G765W 0.49 deleterious(0.01) probably_damaging(1) TCGA-91-6848-01 7 111541736 111541736 C T DOCK4 Silent p.L438L 0.46 TCGA-91-6848-01 7 112462386 112462386 G A C7orf60 Missense_Mutation p.P211S 0.39 tolerated(0.1) benign(0.202) TCGA-91-6848-01 7 119915158 119915158 G T KCND2 Missense_Mutation p.G158W 0.49 deleterious(0.02) benign(0.199) TCGA-91-6848-01 7 122755547 122755547 A G SLC13A1 3'UTR 0.25 TCGA-91-6848-01 7 123302408 123302408 A T LMOD2 Silent p.A256A 0.33 TCGA-91-6848-01 7 129351329 129351329 A T NRF1 Silent p.A326A 0.63 TCGA-91-6848-01 7 136699890 136699890 C A CHRM2 Missense_Mutation p.P93H 0.41 deleterious(0.01) probably_damaging(0.964) TCGA-91-6848-01 7 143826389 143826389 C A OR2A14 Missense_Mutation p.L62I 0.40 deleterious(0.01) possibly_damaging(0.802) TCGA-91-6848-01 7 14647102 14647102 G C DGKB Missense_Mutation p.P465A 0.19 deleterious(0) probably_damaging(1) TCGA-91-6848-01 7 148978664 148978664 G C ZNF783 Missense_Mutation p.G291R 0.30 tolerated(0.19) possibly_damaging(0.678) TCGA-91-6848-01 7 149486743 149486743 G A SSPO RNA 0.62 TCGA-91-6848-01 7 1517509 1517509 G C INTS1 Missense_Mutation p.S1565C 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.572) TCGA-91-6848-01 7 19738056 19738056 A C TWISTNB Missense_Mutation p.S300R 0.03 deleterious(0) probably_damaging(0.999) TCGA-91-6848-01 7 20438485 20438485 G T ITGB8 Missense_Mutation p.K383N 0.16 tolerated(0.05) benign(0.046) TCGA-91-6848-01 7 20721220 20721220 G T ABCB5 Silent p.L600L 0.41 TCGA-91-6848-01 7 23017986 23017986 G C FAM126A Missense_Mutation p.L79V 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-91-6848-01 7 23830442 23830442 G T STK31 Splice_Site p.X880_splice 0.17 TCGA-91-6848-01 7 27134035 27134035 C A HOXA1 3'UTR 0.40 TCGA-91-6848-01 7 30931580 30931580 G C FAM188B Missense_Mutation p.G745A 0.22 deleterious(0) possibly_damaging(0.595) TCGA-91-6848-01 7 31126042 31126042 G T ADCYAP1R1 Silent p.V238V 0.20 TCGA-91-6848-01 7 31917623 31917623 A G PDE1C Missense_Mutation p.V211A 0.23 tolerated(0.41) benign(0.074) TCGA-91-6848-01 7 33035928 33035928 C A FKBP9 Missense_Mutation p.A398D 0.36 deleterious(0.02) probably_damaging(1) TCGA-91-6848-01 7 36438750 36438750 G A ANLN Missense_Mutation p.V79I 0.31 tolerated(0.18) benign(0.075) TCGA-91-6848-01 7 40087427 40087427 A T CDK13 Missense_Mutation p.I851L 0.22 tolerated(0.2) probably_damaging(0.97) TCGA-91-6848-01 7 43483975 43483975 C T HECW1 Missense_Mutation p.P402S 0.10 tolerated_low_confidence(0.93) benign(0.001) TCGA-91-6848-01 7 47814740 47814740 C G PKD1L1 3'UTR 0.27 TCGA-91-6848-01 7 50070862 50070862 G T ZPBP Missense_Mutation p.H178N 0.28 deleterious(0.04) probably_damaging(0.999) TCGA-91-6848-01 7 6042127 6042127 G A PMS2 Missense_Mutation p.T165I 0.29 deleterious(0) probably_damaging(0.967) TCGA-91-6848-01 7 63981860 63981860 A G ZNF680 Silent p.H424H 0.30 TCGA-91-6848-01 7 63982757 63982757 A G ZNF680 Silent p.S125S 0.07 TCGA-91-6848-01 7 80447727 80447727 C A SEMA3C Missense_Mutation p.C112F 0.42 deleterious(0.01) probably_damaging(1) TCGA-91-6848-01 7 882848 882848 G T SUN1 Missense_Mutation p.D153Y 0.20 deleterious(0) probably_damaging(0.998) TCGA-91-6848-01 7 92761383 92761383 C T SAMD9L Missense_Mutation p.R1301K 0.32 tolerated(1) benign(0.002) TCGA-91-6848-01 7 99704334 99704334 C G AP4M1 Silent p.A397A 0.24 TCGA-91-6848-01 8 103341407 103341407 G C UBR5 Missense_Mutation p.R413G 0.20 deleterious(0) possibly_damaging(0.791) TCGA-91-6848-01 8 113246694 113246694 C A CSMD3 Missense_Mutation p.S3547I 0.19 deleterious(0) benign(0.067) TCGA-91-6848-01 8 113353834 113353834 C A CSMD3 Missense_Mutation p.S2175I 0.19 deleterious(0) probably_damaging(0.943) TCGA-91-6848-01 8 124449567 124449567 G A WDYHV1 Silent p.E167E 0.45 TCGA-91-6848-01 8 126093909 126093909 C G KIAA0196 Missense_Mutation p.R171P 0.26 deleterious(0) probably_damaging(0.998) TCGA-91-6848-01 8 133141659 133141659 C - KCNQ3 Frame_Shift_Del p.S824Rfs*4 0.20 TCGA-91-6848-01 8 135614893 135614893 G C ZFAT Missense_Mutation p.R357G 0.24 tolerated(0.14) probably_damaging(0.991) TCGA-91-6848-01 8 139638487 139638487 C T COL22A1 Splice_Site p.X1222_splice 0.20 TCGA-91-6848-01 8 143569828 143569828 G T BAI1 Missense_Mutation p.R804S 0.32 deleterious(0.02) possibly_damaging(0.537) TCGA-91-6848-01 8 143623553 143623553 G A BAI1 Missense_Mutation p.V1320I 0.30 tolerated(0.9) benign(0.062) TCGA-91-6848-01 8 143993949 143993949 G A CYP11B2 Silent p.H465H 0.23 TCGA-91-6848-01 8 143994223 143994223 C T CYP11B2 Silent p.G400G 0.15 TCGA-91-6848-01 8 145741937 145741937 C A RECQL4 Missense_Mutation p.G189V 0.29 deleterious(0.03) probably_damaging(0.917) TCGA-91-6848-01 8 146017401 146017401 G A RPL8 Silent p.H38H 0.26 TCGA-91-6848-01 8 22926386 22926386 C A TNFRSF10B Missense_Mutation p.A8S 0.37 deleterious(0.04) benign(0.048) TCGA-91-6848-01 8 26237541 26237541 T A BNIP3L 5'Flank 0.42 TCGA-91-6848-01 8 30700207 30700207 C A TEX15 Missense_Mutation p.M2109I 0.39 tolerated(0.06) probably_damaging(0.991) TCGA-91-6848-01 8 39836695 39836695 A T IDO2 Missense_Mutation p.Q115L 0.50 tolerated(0.06) benign(0.098) TCGA-91-6848-01 8 49833868 49833868 G A SNAI2 5'UTR 0.37 TCGA-91-6848-01 8 52567288 52567288 G - PXDNL Frame_Shift_Del p.P66Qfs*11 0.17 TCGA-91-6848-01 8 52733134 52733134 C T PCMTD1 Missense_Mutation p.R284K 0.06 tolerated(0.07) benign(0.097) TCGA-91-6848-01 8 63927860 63927860 C A GGH 3'UTR 0.28 TCGA-91-6848-01 8 63927866 63927866 T G GGH 3'UTR 0.26 TCGA-91-6848-01 8 68396970 68396970 A G CPA6 Missense_Mutation p.Y231H 0.13 deleterious(0.05) benign(0.02) TCGA-91-6848-01 8 69028092 69028092 G C PREX2 Missense_Mutation p.R1084P 0.12 deleterious_low_confidence(0.01) benign(0.208) TCGA-91-6848-01 8 71075089 71075089 C A NCOA2 Missense_Mutation p.G278V 0.14 deleterious(0) probably_damaging(1) TCGA-91-6848-01 8 72184041 72184041 C A EYA1 Silent p.R306R 0.12 TCGA-91-6848-01 8 77618055 77618055 G T ZFHX4 Missense_Mutation p.A578S 0.08 benign(0.005) TCGA-91-6848-01 8 82665420 82665420 G T CHMP4C Missense_Mutation p.E104D 0.13 deleterious(0.05) possibly_damaging(0.838) TCGA-91-6848-01 8 88218367 88218367 G T CNBD1 Splice_Site p.X193_splice 0.12 TCGA-91-6848-01 8 90926337 90926337 A G OSGIN2 Missense_Mutation p.M78V 0.24 deleterious(0) benign(0.209) TCGA-91-6848-01 8 94792843 94792843 G T TMEM67 Missense_Mutation p.C246F 0.25 deleterious(0) probably_damaging(1) TCGA-91-6848-01 8 99718862 99718862 C A STK3 Missense_Mutation p.D201Y 0.13 deleterious(0) possibly_damaging(0.708) TCGA-91-6848-01 9 100417207 100417207 A T NCBP1 Missense_Mutation p.N406Y 0.16 deleterious(0) probably_damaging(0.987) TCGA-91-6848-01 9 106889608 106889608 A T SMC2 Missense_Mutation p.K879N 0.40 deleterious(0) benign(0.213) TCGA-91-6848-01 9 126132895 126132895 G A CRB2 Silent p.Q521Q 0.25 TCGA-91-6848-01 9 126144897 126144897 T A DENND1A Missense_Mutation p.D615V 0.21 deleterious(0) possibly_damaging(0.739) TCGA-91-6848-01 9 130868020 130868020 C T SLC25A25 Missense_Mutation p.R254C 0.35 deleterious(0) possibly_damaging(0.797) TCGA-91-6848-01 9 131503873 131503873 C G ZER1 Missense_Mutation p.D560H 0.11 tolerated(0.13) probably_damaging(0.996) TCGA-91-6848-01 9 132740764 132740764 G C FNBP1 Missense_Mutation p.L109V 0.11 deleterious(0.02) benign(0.006) TCGA-91-6848-01 9 134090701 134090701 A T NUP214 Missense_Mutation p.N1899Y 0.33 possibly_damaging(0.878) TCGA-91-6848-01 9 136302875 136302875 C G ADAMTS13 Missense_Mutation p.A481G 0.42 tolerated(0.08) benign(0.047) TCGA-91-6848-01 9 33034271 33034271 T A DNAJA1 Missense_Mutation p.L234Q 0.44 deleterious(0.01) benign(0.235) TCGA-91-6848-01 9 36882074 36882074 G A PAX5 Silent p.P313P 0.43 TCGA-91-6848-01 9 40772703 40772703 C A ZNF658 Nonsense_Mutation p.E858* 0.18 TCGA-91-6848-01 9 5164203 5164203 C A INSL6 Missense_Mutation p.D118Y 0.27 tolerated(1) benign(0) TCGA-91-6848-01 9 6536191 6536191 A G GLDC Missense_Mutation p.M904T 0.12 deleterious(0) probably_damaging(0.972) TCGA-91-6848-01 9 74345096 74345096 G A TMEM2 Missense_Mutation p.T616I 0.24 tolerated(0.14) benign(0.001) TCGA-91-6848-01 9 84608954 84608954 C G SPATA31D1 Nonsense_Mutation p.S1190* 0.39 TCGA-91-6848-01 9 84609725 84609725 T A SPATA31D1 Missense_Mutation p.V1447E 0.40 deleterious(0.04) benign(0.029) TCGA-91-6848-01 9 94485895 94485895 T A ROR2 3'UTR 0.26 TCGA-91-6848-01 X 101911387 101911387 A G GPRASP1 Missense_Mutation p.E849G 0.09 deleterious(0.01) benign(0.048) TCGA-91-6848-01 X 114239843 114239844 - G IL13RA2 Frame_Shift_Ins p.W345Lfs*21 0.31 TCGA-91-6848-01 X 117960152 117960152 G T ZCCHC12 Missense_Mutation p.R315S 0.44 tolerated(0.85) benign(0.006) TCGA-91-6848-01 X 118257545 118257545 C A KIAA1210 Nonsense_Mutation p.G161* 0.67 TCGA-91-6848-01 X 125299602 125299602 C G DCAF12L2 Silent p.A102A 0.46 TCGA-91-6848-01 X 135312579 135312579 C T MAP7D3 Missense_Mutation p.C572Y 0.30 tolerated(1) benign(0.013) TCGA-91-6848-01 X 139038325 139038325 T C CXorf66 Silent p.K272K 0.20 TCGA-91-6848-01 X 140994582 140994582 G A MAGEC1 Silent p.E464E 0.38 TCGA-91-6848-01 X 140995221 140995221 G T MAGEC1 Missense_Mutation p.Q677H 0.51 deleterious_low_confidence(0) benign(0.216) TCGA-91-6848-01 X 148035185 148035185 G C AFF2 Missense_Mutation p.E491D 0.27 tolerated(0.1) probably_damaging(0.992) TCGA-91-6848-01 X 150889935 150889935 C A FATE1 Nonsense_Mutation p.Y101* 0.44 TCGA-91-6848-01 X 151935429 151935429 G C MAGEA3 Silent p.L246L 0.39 TCGA-91-6848-01 X 153051078 153051078 G C SRPK3 3'UTR 0.36 TCGA-91-6848-01 X 153278081 153278081 A G IRAK1 Missense_Mutation p.I660T 0.18 deleterious(0) probably_damaging(0.999) TCGA-91-6848-01 X 18924666 18924666 C T PHKA2 Missense_Mutation p.G918E 0.31 deleterious(0) probably_damaging(0.99) TCGA-91-6848-01 X 23749030 23749030 G C ACOT9 Missense_Mutation p.P89A 0.20 tolerated(0.33) benign(0.015) TCGA-91-6848-01 X 27839860 27839860 A T MAGEB10 Missense_Mutation p.K146M 0.26 deleterious(0) probably_damaging(0.991) TCGA-91-6848-01 X 37027421 37027421 C G FAM47C Nonsense_Mutation p.S313* 0.18 TCGA-91-6848-01 X 37587351 37587351 G C XK Missense_Mutation p.R324T 0.51 deleterious(0) probably_damaging(1) TCGA-91-6848-01 X 47045016 47045016 C T RBM10 Missense_Mutation p.S781L 0.62 deleterious(0) probably_damaging(0.991) TCGA-91-6848-01 X 47086816 47086816 G T CDK16 Missense_Mutation p.M515I 0.53 deleterious(0.01) probably_damaging(0.975) TCGA-91-6848-01 X 66765064 66765064 C A AR Missense_Mutation p.L26M 0.34 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-91-6848-01 X 73044698 73044698 C A XIST RNA 0.42 TCGA-91-6848-01 X 73071534 73071534 G A XIST RNA 0.18 TCGA-91-6848-01 X 86067912 86067912 C G DACH2 Missense_Mutation p.L432V 0.33 deleterious(0.03) possibly_damaging(0.72) TCGA-91-6848-01 X 91090816 91090816 C G PCDH11X Missense_Mutation p.H105D 0.27 tolerated(0.27) benign(0.04) TCGA-91-6848-01 X 92964395 92964395 C A FAM133A 5'UTR 0.42 TCGA-91-6849-01 10 108536324 108536324 C T SORCS1 Missense_Mutation p.D285N 0.29 tolerated(0.14) benign(0.263) TCGA-91-6849-01 10 108923969 108923969 C A SORCS1 Missense_Mutation p.G106C 0.41 deleterious_low_confidence(0.02) possibly_damaging(0.746) TCGA-91-6849-01 10 127705850 127705850 A T ADAM12 Nonstop_Mutation p.*910Rext*9 0.41 TCGA-91-6849-01 10 27702244 27702244 C A PTCHD3 Missense_Mutation p.M312I 0.27 tolerated(0.19) benign(0.008) TCGA-91-6849-01 10 51978297 51978297 C T ASAH2 Silent p.E329E 0.26 TCGA-91-6849-01 10 54531287 54531287 C A MBL2 Missense_Mutation p.A37S 0.38 tolerated(0.14) benign(0.196) TCGA-91-6849-01 10 8116093 8116093 G T GATA3 3'UTR 0.36 TCGA-91-6849-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.39 TCGA-91-6849-01 11 34904943 34904943 T A APIP Silent p.V190V 0.31 TCGA-91-6849-01 11 4870118 4870118 T A OR51S1 Silent p.L107L 0.34 TCGA-91-6849-01 11 5842289 5842289 A G OR52N2 Missense_Mutation p.T242A 0.29 deleterious(0) probably_damaging(1) TCGA-91-6849-01 11 63313865 63313865 G T RARRES3 3'UTR 0.50 TCGA-91-6849-01 11 66455642 66455642 G A SPTBN2 Silent p.D2124D 0.22 TCGA-91-6849-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.28 deleterious(0.04) probably_damaging(0.993) TCGA-91-6849-01 12 46230571 46230571 C T ARID2 Nonsense_Mutation p.R274* 0.42 TCGA-91-6849-01 12 48457499 48457499 A G SENP1 Silent p.N467N 0.26 TCGA-91-6849-01 12 57115188 57115188 T A NACA Silent p.G42G 0.28 TCGA-91-6849-01 12 6761453 6761453 C A ING4 Missense_Mutation p.G211V 0.31 deleterious(0) probably_damaging(0.999) TCGA-91-6849-01 14 69378902 69378902 C A ACTN1 Missense_Mutation p.R133L 0.26 deleterious(0) probably_damaging(0.996) TCGA-91-6849-01 14 92625582 92625582 G T CPSF2 Nonsense_Mutation p.E693* 0.18 TCGA-91-6849-01 14 94107507 94107507 C T UNC79 Silent p.S1801S 0.24 TCGA-91-6849-01 15 101608898 101608898 G T LRRK1 Missense_Mutation p.V1965L 0.34 tolerated_low_confidence(0.14) benign(0.047) TCGA-91-6849-01 15 23048975 23048975 C A NIPA1 Nonsense_Mutation p.E282* 0.42 TCGA-91-6849-01 15 24923547 24923547 G T NPAP1 Nonsense_Mutation p.E845* 0.33 TCGA-91-6849-01 15 44789292 44789292 T C CTDSPL2 Silent p.L280L 0.24 TCGA-91-6849-01 15 54307911 54307911 C G UNC13C Silent p.P937P 0.36 TCGA-91-6849-01 15 82533632 82533632 A T EFTUD1 Silent p.A119A 0.29 TCGA-91-6849-01 15 86800211 86800211 G C AGBL1 Missense_Mutation p.G242A 0.32 tolerated(0.16) probably_damaging(0.942) TCGA-91-6849-01 16 4408035 4408035 C A CORO7 Missense_Mutation p.A843S 0.27 tolerated(0.09) possibly_damaging(0.626) TCGA-91-6849-01 16 74709626 74709626 T A MLKL Missense_Mutation p.M359L 0.28 deleterious(0.01) benign(0) TCGA-91-6849-01 16 84520279 84520279 C A TLDC1 Missense_Mutation p.G306W 0.20 deleterious(0) probably_damaging(1) TCGA-91-6849-01 16 849011 849011 G T GNG13 Missense_Mutation p.Q23K 0.20 tolerated(0.84) benign(0) TCGA-91-6849-01 16 849012 849012 G T GNG13 Missense_Mutation p.F22L 0.20 tolerated(0.98) benign(0.099) TCGA-91-6849-01 17 16722793 16722793 C T AC022596.6 RNA 0.27 TCGA-91-6849-01 17 3539511 3539511 C T SHPK Translation_Start_Site p.M1? 0.23 deleterious(0.01) possibly_damaging(0.675) TCGA-91-6849-01 17 70117604 70117604 C G SOX9 Silent p.P24P 0.19 TCGA-91-6849-01 17 8736345 8736345 G T PIK3R6 Silent p.T221T 0.29 TCGA-91-6849-01 18 30257294 30257294 C G KLHL14 Splice_Site p.X530_splice 0.27 TCGA-91-6849-01 18 42531491 42531491 G T SETBP1 Missense_Mutation p.R729M 0.28 deleterious(0) probably_damaging(0.998) TCGA-91-6849-01 18 42531492 42531492 G T SETBP1 Missense_Mutation p.R729S 0.26 deleterious(0) probably_damaging(0.993) TCGA-91-6849-01 18 47364056 47364056 T C MYO5B Missense_Mutation p.I1657V 0.35 tolerated(0.34) benign(0.001) TCGA-91-6849-01 19 10610235 10610235 C G KEAP1 Missense_Mutation p.A159P 0.41 deleterious(0) probably_damaging(1) TCGA-91-6849-01 19 19655215 19655215 G T CILP2 Missense_Mutation p.A621S 0.40 deleterious(0.02) possibly_damaging(0.887) TCGA-91-6849-01 19 43708259 43708259 C G PSG4 Missense_Mutation p.G70A 0.54 deleterious(0) probably_damaging(0.937) TCGA-91-6849-01 19 50461674 50461674 G T SIGLEC11 Missense_Mutation p.T506N 0.30 deleterious(0) probably_damaging(0.997) TCGA-91-6849-01 19 53747009 53747009 G T ZNF677 Missense_Mutation p.P53T 0.30 tolerated(0.47) benign(0.017) TCGA-91-6849-01 19 54377408 54377408 G T MYADM Missense_Mutation p.V209L 0.29 deleterious(0) possibly_damaging(0.883) TCGA-91-6849-01 19 54745554 54745554 C T LILRA6 Missense_Mutation p.V186M 0.23 tolerated(0.11) benign(0.436) TCGA-91-6849-01 19 54823398 54823398 G T LILRA5 Missense_Mutation p.L49I 0.26 tolerated(0.67) possibly_damaging(0.575) TCGA-91-6849-01 19 55753857 55753857 C G PPP6R1 Splice_Site p.X207_splice 0.28 TCGA-91-6849-01 19 57835140 57835140 G T ZNF543 Missense_Mutation p.V37L 0.27 deleterious(0) probably_damaging(0.98) TCGA-91-6849-01 19 6457519 6457519 C A SLC25A23 Missense_Mutation p.L122F 0.43 deleterious(0.03) probably_damaging(0.961) TCGA-91-6849-01 1 118454705 118454705 C T GDAP2 Splice_Site p.X157_splice 0.24 TCGA-91-6849-01 1 158746799 158746799 G T OR6N2 Silent p.I209I 0.18 TCGA-91-6849-01 1 169100602 169100602 C T ATP1B1 Nonsense_Mutation p.Q241* 0.23 TCGA-91-6849-01 1 175334271 175334271 G A TNR Missense_Mutation p.S821F 0.10 tolerated(0.1) benign(0.003) TCGA-91-6849-01 1 180775265 180775265 G A XPR1 Missense_Mutation p.G172E 0.21 deleterious(0) probably_damaging(0.999) TCGA-91-6849-01 1 183947644 183947644 C A COLGALT2 Missense_Mutation p.D92Y 0.22 deleterious(0) probably_damaging(0.992) TCGA-91-6849-01 1 185270131 185270131 C G IVNS1ABP Missense_Mutation p.E365Q 0.19 tolerated(0.11) benign(0.403) TCGA-91-6849-01 1 214705794 214705794 C A PTPN14 Intron 0.17 TCGA-91-6849-01 1 214705795 214705795 C A PTPN14 Intron 0.15 TCGA-91-6849-01 1 234509375 234509375 G T COA6 5'Flank 0.20 TCGA-91-6849-01 1 27238432 27238432 G A NR0B2 Silent p.S226S 0.28 TCGA-91-6849-01 1 29481238 29481238 C A SRSF4 Missense_Mutation p.R183L 0.27 deleterious(0) benign(0.25) TCGA-91-6849-01 1 47276491 47276491 G A CYP4B1 Silent p.T64T 0.33 TCGA-91-6849-01 1 52403001 52403001 G T RAB3B Silent p.I104I 0.35 TCGA-91-6849-01 1 93306104 93306126 TCAGATGGAGGAGATGTATAAGA - RPL5 Splice_Site p.X236_splice 0.12 TCGA-91-6849-01 20 18794378 18794378 T C SCP2D1 5'UTR 0.38 TCGA-91-6849-01 20 23666557 23666557 C G CST4 Missense_Mutation p.V134L 0.26 tolerated(0.58) benign(0.019) TCGA-91-6849-01 20 35632012 35632012 T A RBL1 Intron 0.24 TCGA-91-6849-01 21 40194699 40194699 G T ETS2 Missense_Mutation p.K432N 0.35 deleterious(0) probably_damaging(0.999) TCGA-91-6849-01 22 21336817 21336817 C T LZTR1 Missense_Mutation p.R53C 0.28 deleterious(0) possibly_damaging(0.794) TCGA-91-6849-01 22 22673464 22673464 G C IGLV5-52 Missense_Mutation p.R86P 0.27 deleterious(0.01) benign(0.297) TCGA-91-6849-01 22 28315222 28315222 C G PITPNB 5'UTR 0.22 TCGA-91-6849-01 2 132914566 132914566 C T ANKRD30BL Missense_Mutation p.D163N 0.24 tolerated(1) possibly_damaging(0.458) TCGA-91-6849-01 2 152383524 152383524 G T NEB Missense_Mutation p.L7285M 0.19 probably_damaging(0.995) TCGA-91-6849-01 2 152432670 152432670 T C NEB Missense_Mutation p.S5635G 0.26 probably_damaging(0.998) TCGA-91-6849-01 2 179594055 179594055 T A TTN Missense_Mutation p.E6276D 0.31 TCGA-91-6849-01 2 203591005 203591005 T A FAM117B Missense_Mutation p.S293R 0.28 deleterious(0.03) probably_damaging(0.996) TCGA-91-6849-01 2 212589824 212589824 C A ERBB4 Nonsense_Mutation p.G240* 0.35 TCGA-91-6849-01 2 219249006 219249006 C T SLC11A1 Missense_Mutation p.P64L 0.25 deleterious(0) benign(0.294) TCGA-91-6849-01 2 50779780 50779780 C A NRXN1 Missense_Mutation p.K608N 0.25 tolerated(0.12) benign(0.333) TCGA-91-6849-01 2 61706009 61706009 C A XPO1 Missense_Mutation p.M1054I 0.21 tolerated(0.09) benign(0.002) TCGA-91-6849-01 2 61729132 61729132 T A XPO1 Missense_Mutation p.Q136L 0.20 deleterious(0.01) benign(0.167) TCGA-91-6849-01 3 111958724 111958724 A T SLC9C1 Missense_Mutation p.M470K 0.16 tolerated(0.07) benign(0.327) TCGA-91-6849-01 3 138191512 138191512 A G ESYT3 Missense_Mutation p.K683R 0.25 tolerated(0.47) benign(0.016) TCGA-91-6849-01 3 138191513 138191513 G T ESYT3 Missense_Mutation p.K683N 0.25 tolerated(0.38) benign(0.424) TCGA-91-6849-01 3 138191514 138191514 A C ESYT3 Missense_Mutation p.S684R 0.25 tolerated(0.16) benign(0.393) TCGA-91-6849-01 3 14755649 14755649 C A C3orf20 Missense_Mutation p.H432Q 0.31 tolerated(0.26) benign(0.076) TCGA-91-6849-01 3 164792419 164792419 C T SI Missense_Mutation p.R52H 0.18 tolerated(0.38) benign(0.004) TCGA-91-6849-01 3 189526252 189526252 A G TP63 Silent p.P172P 0.26 TCGA-91-6849-01 3 55521015 55521015 G A WNT5A 5'UTR 0.46 TCGA-91-6849-01 4 122749557 122749557 T - BBS7 Frame_Shift_Del p.E631Nfs*12 0.25 TCGA-91-6849-01 4 123171706 123171706 G A KIAA1109 Missense_Mutation p.G1967E 0.34 benign(0.002) TCGA-91-6849-01 5 102432325 102432325 C T GIN1 Missense_Mutation p.R405K 0.28 tolerated(0.17) probably_damaging(0.913) TCGA-91-6849-01 5 128362939 128362939 G T SLC27A6 Missense_Mutation p.D457Y 0.32 deleterious(0) probably_damaging(1) TCGA-91-6849-01 5 138266210 138266210 C G CTNNA1 Missense_Mutation p.Q687E 0.29 deleterious(0.03) possibly_damaging(0.708) TCGA-91-6849-01 5 140559724 140559724 C T PCDHB8 Silent p.L703L 0.30 TCGA-91-6849-01 5 140595072 140595072 C A PCDHB13 Missense_Mutation p.F459L 0.28 tolerated_low_confidence(0.26) benign(0.003) TCGA-91-6849-01 5 80419539 80419539 G T RASGRF2 Missense_Mutation p.C850F 0.25 deleterious_low_confidence(0.01) benign(0.267) TCGA-91-6849-01 6 143094060 143094060 C A HIVEP2 Missense_Mutation p.V606L 0.42 tolerated(0.63) benign(0.001) TCGA-91-6849-01 6 161508846 161508846 G T MAP3K4 Missense_Mutation p.V895L 0.46 tolerated(0.78) benign(0.002) TCGA-91-6849-01 6 66115164 66115164 C G EYS Missense_Mutation p.C320S 0.27 deleterious(0) benign(0.021) TCGA-91-6849-01 7 103202009 103202009 G T RELN Silent p.I1833I 0.26 TCGA-91-6849-01 7 142326586 142326586 C G TRBV19 Missense_Mutation p.L6V 0.35 deleterious(0.02) benign(0.126) TCGA-91-6849-01 7 20778674 20778674 C G ABCB5 Missense_Mutation p.S979C 0.31 deleterious(0) probably_damaging(0.976) TCGA-91-6849-01 7 23358808 23358808 C G IGF2BP3 Missense_Mutation p.K423N 0.27 deleterious(0.03) possibly_damaging(0.534) TCGA-91-6849-01 7 42950377 42950377 T - C7orf25 Frame_Shift_Del p.K99Nfs*2 0.26 TCGA-91-6849-01 7 43360233 43360233 G A HECW1 Splice_Site p.X118_splice 0.27 TCGA-91-6849-01 7 45753603 45753603 A G ADCY1 3'UTR 0.27 TCGA-91-6849-01 7 62752645 62752645 A T ZNF733P RNA 0.24 TCGA-91-6849-01 7 81579591 81579591 A T CACNA2D1 3'UTR 0.16 TCGA-91-6849-01 7 91980320 91980320 A T ANKIB1 Missense_Mutation p.Y381F 0.26 tolerated(0.44) benign(0.003) TCGA-91-6849-01 8 139164870 139164870 A G FAM135B Silent p.S616S 0.27 TCGA-91-6849-01 8 145649137 145649137 G A VPS28 3'UTR 0.31 TCGA-91-6849-01 8 145735371 145735371 G C MFSD3 Missense_Mutation p.A219P 0.24 deleterious(0.03) possibly_damaging(0.887) TCGA-91-6849-01 8 19221702 19221702 C A SH2D4A Missense_Mutation p.P276T 0.26 tolerated(0.16) benign(0.009) TCGA-91-6849-01 8 32611924 32611924 C T NRG1 Silent p.T250T 0.24 TCGA-91-6849-01 8 59059008 59059008 G C FAM110B Missense_Mutation p.E73D 0.33 deleterious(0.02) probably_damaging(0.995) TCGA-91-6849-01 8 77767692 77767692 G T ZFHX4 Silent p.L2845L 0.33 TCGA-91-6849-01 8 77767693 77767693 G T ZFHX4 Missense_Mutation p.D2846Y 0.34 possibly_damaging(0.79) TCGA-91-6849-01 9 100965613 100965614 AT - TBC1D2 Frame_Shift_Del p.I743Hfs*4 0.23 TCGA-91-6849-01 9 120476594 120476595 AG T TLR4 Frame_Shift_Del p.R731Efs*3 0.20 TCGA-91-6849-01 9 134385140 134385140 C T POMT1 Silent p.L184L 0.29 TCGA-91-6849-01 9 6986603 6986603 C T KDM4C Silent p.G538G 0.35 TCGA-91-6849-01 9 82333886 82333886 G T TLE4 Silent p.L530L 0.35 TCGA-91-6849-01 9 82333887 82333887 G T TLE4 Splice_Site p.X530_splice 0.34 TCGA-91-6849-01 X 103411604 103411604 C T FAM199X Silent p.F46F 0.23 TCGA-91-6849-01 X 107869498 107869498 C G COL4A5 Silent p.S1055S 0.26 TCGA-91-6849-01 X 129055497 129055497 C A UTP14A Silent p.R428R 0.28 TCGA-91-6849-01 X 133675416 133675416 A T MIR542 RNA 0.27 TCGA-91-6849-01 X 133675417 133675417 G C MIR542 RNA 0.27 TCGA-91-6849-01 X 138871610 138871610 G T ATP11C Missense_Mutation p.T418N 0.23 deleterious(0.01) benign(0.119) TCGA-91-6849-01 X 142718322 142718322 G T SLITRK4 Missense_Mutation p.H201Q 0.29 deleterious(0.04) probably_damaging(0.996) TCGA-91-6849-01 X 152967486 152967486 C G BCAP31 Missense_Mutation p.L293F 0.25 deleterious(0) probably_damaging(0.994) TCGA-91-6849-01 X 153296461 153296461 C A MECP2 Missense_Mutation p.G285V 0.30 deleterious(0.01) benign(0.219) TCGA-91-6849-01 X 27766230 27766230 C G DCAF8L2 Silent p.G406G 0.31 TCGA-91-6849-01 X 3240968 3240968 G C MXRA5 Missense_Mutation p.P920A 0.30 tolerated(0.39) benign(0) TCGA-91-6849-01 X 34648399 34648399 G A TMEM47 3'UTR 0.33 TCGA-91-6849-01 X 34961951 34961951 C A FAM47B Missense_Mutation p.P335T 0.29 tolerated(0.1) benign(0.098) TCGA-91-6849-01 X 49035674 49035674 G A PRICKLE3 Missense_Mutation p.R164W 0.27 deleterious(0) probably_damaging(0.999) TCGA-91-6849-01 X 49047923 49047923 C T SYP Missense_Mutation p.A305T 0.25 deleterious(0.02) unknown(0) TCGA-91-6849-01 X 49840596 49840596 G A CLCN5 Missense_Mutation p.E188K 0.28 tolerated(0.29) benign(0.014) TCGA-91-6849-01 X 54783622 54783622 G T ITIH6 Missense_Mutation p.P962Q 0.40 tolerated(0.13) benign(0.157) TCGA-91-6849-01 X 70782790 70782790 C A OGT Missense_Mutation p.Q691K 0.26 tolerated(0.29) benign(0.046) TCGA-91-6849-01 X 91874008 91874008 G C PCDH11X 3'UTR 0.33 TCGA-91-7771-01 10 103607161 103607161 C A C10orf76 3'UTR 0.20 TCGA-91-7771-01 10 131334541 131334541 C T MGMT Missense_Mutation p.R40C 0.24 tolerated(0.16) possibly_damaging(0.863) TCGA-91-7771-01 10 16967685 16967685 C A CUBN Missense_Mutation p.W2120C 0.20 deleterious(0) probably_damaging(1) TCGA-91-7771-01 10 17110211 17110211 G T CUBN Missense_Mutation p.H954N 0.07 deleterious(0.05) benign(0.194) TCGA-91-7771-01 10 25885651 25885651 G T GPR158 Missense_Mutation p.G693V 0.05 deleterious(0) probably_damaging(0.986) TCGA-91-7771-01 10 33502610 33502610 C G NRP1 Missense_Mutation p.G440R 0.13 deleterious(0) probably_damaging(1) TCGA-91-7771-01 10 43691988 43691988 C T RASGEF1A Missense_Mutation p.V453I 0.08 tolerated(0.21) benign(0) TCGA-91-7771-01 10 43971290 43971290 C T ZNF487 Missense_Mutation p.S11L 0.17 deleterious(0) probably_damaging(0.976) TCGA-91-7771-01 10 50374896 50374896 G T C10orf128 Intron 0.09 TCGA-91-7771-01 10 52912943 52912943 G A PRKG1 Missense_Mutation p.E111K 0.28 tolerated(0.11) benign(0.025) TCGA-91-7771-01 10 52912944 52912944 A T PRKG1 Missense_Mutation p.E111V 0.28 deleterious(0.02) benign(0.025) TCGA-91-7771-01 10 55755468 55755468 G T PCDH15 Missense_Mutation p.P937T 0.12 deleterious(0.04) probably_damaging(0.997) TCGA-91-7771-01 10 6067883 6067883 C G IL2RA Missense_Mutation p.R57T 0.04 deleterious(0) probably_damaging(0.94) TCGA-91-7771-01 10 75147496 75147496 T C ANXA7 Missense_Mutation p.N217S 0.25 tolerated(0.07) benign(0.206) TCGA-91-7771-01 10 75510968 75510968 A C SEC24C Missense_Mutation p.Q92P 0.08 deleterious(0) possibly_damaging(0.833) TCGA-91-7771-01 10 93757446 93757446 G C BTAF1 Missense_Mutation p.D1200H 0.11 deleterious(0.04) benign(0.01) TCGA-91-7771-01 11 1018718 1018718 G A MUC6 Silent p.G1361G 0.09 TCGA-91-7771-01 11 1155162 1155162 C A MUC5AC Missense_Mutation p.A57E 0.19 deleterious(0.01) benign(0.007) TCGA-91-7771-01 11 117335702 117335702 G A DSCAML1 Missense_Mutation p.T1134M 0.11 tolerated(0.06) benign(0.258) TCGA-91-7771-01 11 124509640 124509640 T C SIAE Missense_Mutation p.M364V 0.09 tolerated(0.11) benign(0.02) TCGA-91-7771-01 11 12903493 12903493 C - TEAD1 Frame_Shift_Del p.I190Ffs*84 0.10 TCGA-91-7771-01 11 2154748 2154748 G A IGF2 Missense_Mutation p.P158L 0.12 deleterious(0) probably_damaging(0.918) TCGA-91-7771-01 11 2398821 2398821 C T CD81 Silent p.L14L 0.24 TCGA-91-7771-01 11 418979 418979 C A ANO9 Missense_Mutation p.G649C 0.04 deleterious(0) probably_damaging(0.995) TCGA-91-7771-01 11 4566498 4566498 C G OR52M1 Missense_Mutation p.H26Q 0.05 tolerated(0.12) benign(0.039) TCGA-91-7771-01 11 46831310 46831310 C A CKAP5 Missense_Mutation p.G249C 0.17 tolerated(0.05) possibly_damaging(0.627) TCGA-91-7771-01 11 47681733 47681733 A G AGBL2 Missense_Mutation p.Y901H 0.21 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-91-7771-01 11 48266905 48266905 A G OR4X2 Missense_Mutation p.I84V 0.08 deleterious(0) benign(0.217) TCGA-91-7771-01 11 5153137 5153137 C T OR52A5 Missense_Mutation p.A246T 0.21 deleterious(0.05) benign(0.35) TCGA-91-7771-01 11 55063124 55063124 G T TRIM51HP RNA 0.32 TCGA-91-7771-01 11 55136267 55136267 T A OR4A15 Missense_Mutation p.L303Q 0.20 deleterious_low_confidence(0) possibly_damaging(0.543) TCGA-91-7771-01 11 55703101 55703101 A C OR5I1 Missense_Mutation p.F259C 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-91-7771-01 11 61560079 61560079 C A TMEM258 5'UTR 0.09 TCGA-91-7771-01 11 7111126 7111126 G T RBMXL2 Missense_Mutation p.D259Y 0.09 deleterious(0.03) benign(0.049) TCGA-91-7771-01 11 72712069 72712069 G A FCHSD2 Missense_Mutation p.T118I 0.23 tolerated(0.1) benign(0.011) TCGA-91-7771-01 11 7981425 7981425 A T NLRP10 Silent p.G578G 0.19 TCGA-91-7771-01 11 86662523 86662523 T G FZD4 Silent p.T425T 0.18 TCGA-91-7771-01 11 88911689 88911689 G A TYR Missense_Mutation p.G190R 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-91-7771-01 11 94731161 94731161 C - KDM4D Frame_Shift_Del p.T211Lfs*54 0.16 TCGA-91-7771-01 12 104106154 104106154 C A STAB2 Silent p.T1448T 0.09 TCGA-91-7771-01 12 112460060 112460060 C T ERP29 Silent p.V130V 0.10 TCGA-91-7771-01 12 11421043 11421043 G A PRB3 Missense_Mutation p.P47L 0.06 tolerated(0.05) unknown(0) TCGA-91-7771-01 12 1955760 1955760 C T CACNA2D4 Missense_Mutation p.R781K 0.17 tolerated(1) benign(0.001) TCGA-91-7771-01 12 21196312 21196312 T C SLCO1B7 Missense_Mutation p.W211R 0.18 deleterious(0) probably_damaging(0.999) TCGA-91-7771-01 12 26807047 26807047 C A ITPR2 Missense_Mutation p.A868S 0.20 deleterious(0.01) probably_damaging(0.983) TCGA-91-7771-01 12 43846373 43846373 T G ADAMTS20 Missense_Mutation p.H629P 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-91-7771-01 12 50029039 50029039 C A PRPF40B Missense_Mutation p.R387S 0.36 tolerated(0.14) probably_damaging(0.937) TCGA-91-7771-01 12 56733603 56733603 C T IL23A Silent p.G130G 0.10 TCGA-91-7771-01 12 58008537 58008537 G T ARHGEF25 Silent p.R333R 0.37 TCGA-91-7771-01 12 6103686 6103686 T G VWF Silent p.R2051R 0.15 TCGA-91-7771-01 12 662435 662435 A T B4GALNT3 Missense_Mutation p.N449I 0.12 tolerated(0.09) benign(0.097) TCGA-91-7771-01 12 70149282 70149282 G A RAB3IP Missense_Mutation p.E48K 0.04 tolerated_low_confidence(0.28) benign(0.047) TCGA-91-7771-01 12 70150234 70150234 G A RAB3IP Missense_Mutation p.G117R 0.05 deleterious_low_confidence(0) possibly_damaging(0.495) TCGA-91-7771-01 12 90017984 90017984 C A ATP2B1 Silent p.T440T 0.07 TCGA-91-7771-01 13 107862936 107862936 A G FAM155A Silent p.C361C 0.13 TCGA-91-7771-01 13 32914937 32914937 A G BRCA2 Missense_Mutation p.I2149V 0.17 tolerated(0.4) benign(0.01) TCGA-91-7771-01 13 40175151 40175151 C T LHFP Missense_Mutation p.C68Y 0.22 tolerated(0.06) probably_damaging(0.998) TCGA-91-7771-01 13 42795487 42795487 T C DGKH Missense_Mutation p.I1177T 0.10 deleterious(0) possibly_damaging(0.744) TCGA-91-7771-01 13 77672295 77672295 C A MYCBP2 Missense_Mutation p.R2960S 0.03 probably_damaging(0.972) TCGA-91-7771-01 13 86368055 86368055 T C SLITRK6 3'UTR 0.11 TCGA-91-7771-01 14 20216160 20216160 G T OR4Q3 Missense_Mutation p.D192Y 0.07 deleterious(0) probably_damaging(0.976) TCGA-91-7771-01 14 33016066 33016066 A T AKAP6 Missense_Mutation p.Y736F 0.09 tolerated(0.16) benign(0.004) TCGA-91-7771-01 14 39721990 39721990 G A MIA2 Missense_Mutation p.E536K 0.07 tolerated(0.08) benign(0.039) TCGA-91-7771-01 14 44975456 44975456 T G FSCB Missense_Mutation p.E245D 0.06 tolerated(0.08) possibly_damaging(0.718) TCGA-91-7771-01 14 45414803 45414803 G A KLHL28 Missense_Mutation p.P110L 0.08 deleterious(0) probably_damaging(0.994) TCGA-91-7771-01 14 45414807 45414807 G A KLHL28 Silent p.L109L 0.08 TCGA-91-7771-01 14 45414812 45414812 G A KLHL28 Missense_Mutation p.S107F 0.08 deleterious(0.03) possibly_damaging(0.82) TCGA-91-7771-01 14 45415021 45415021 G A KLHL28 Silent p.I37I 0.13 TCGA-91-7771-01 14 45415118 45415118 G A KLHL28 Missense_Mutation p.S5F 0.15 deleterious(0.03) benign(0.077) TCGA-91-7771-01 14 45415125 45415125 G A KLHL28 Missense_Mutation p.H3Y 0.16 tolerated(0.09) benign(0.053) TCGA-91-7771-01 14 45633573 45633573 G T FANCM Missense_Mutation p.Q531H 0.24 deleterious(0.02) benign(0.063) TCGA-91-7771-01 14 54417079 54417079 G A BMP4 Missense_Mutation p.R300W 0.06 deleterious(0) probably_damaging(0.983) TCGA-91-7771-01 14 59835440 59835440 G T DAAM1 Missense_Mutation p.D1034Y 0.05 deleterious(0) probably_damaging(1) TCGA-91-7771-01 14 74533589 74533589 C T ALDH6A1 Missense_Mutation p.G348E 0.29 deleterious(0) probably_damaging(0.965) TCGA-91-7771-01 15 100649223 100649223 T C ADAMTS17 Missense_Mutation p.T663A 0.27 tolerated(0.38) benign(0.002) TCGA-91-7771-01 15 26825499 26825499 G T GABRB3 Missense_Mutation p.R217S 0.15 deleterious(0.03) benign(0.069) TCGA-91-7771-01 15 26825521 26825521 C A GABRB3 Silent p.P209P 0.15 TCGA-91-7771-01 15 26866463 26866463 G A GABRB3 Silent p.L153L 0.16 TCGA-91-7771-01 15 33359339 33359339 C A FMN1 Missense_Mutation p.Q249H 0.11 deleterious_low_confidence(0) unknown(0) TCGA-91-7771-01 15 40661172 40661172 G T DISP2 Silent p.L953L 0.14 TCGA-91-7771-01 15 41829206 41829206 C A RPAP1 Missense_Mutation p.G40C 0.08 deleterious(0.04) possibly_damaging(0.528) TCGA-91-7771-01 15 90168095 90168095 T A TICRR Silent p.P1518P 0.53 TCGA-91-7771-01 16 14015970 14015970 G T ERCC4 Missense_Mutation p.R97L 0.12 deleterious(0) possibly_damaging(0.903) TCGA-91-7771-01 16 22152928 22152928 G A VWA3A Silent p.G803G 0.13 TCGA-91-7771-01 17 21731278 21731278 G T UBBP4 Intron 0.10 TCGA-91-7771-01 17 34894132 34894132 T A PIGW Silent p.I394I 0.15 TCGA-91-7771-01 17 40139846 40139846 C A DNAJC7 Missense_Mutation p.R334I 0.17 deleterious(0) probably_damaging(0.991) TCGA-91-7771-01 17 7163726 7163726 G A CLDN7 Silent p.Y201Y 0.12 TCGA-91-7771-01 17 73102069 73102069 T C SLC16A5 Missense_Mutation p.W487R 0.12 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-91-7771-01 17 77758731 77758731 C A CBX2 Missense_Mutation p.R497S 0.20 deleterious(0) probably_damaging(0.999) TCGA-91-7771-01 18 31323630 31323630 C T ASXL3 Missense_Mutation p.T1273I 0.13 possibly_damaging(0.826) TCGA-91-7771-01 18 51887198 51887198 T A C18orf54 Missense_Mutation p.C86S 0.09 tolerated(1) benign(0.021) TCGA-91-7771-01 18 905469 905469 G T ADCYAP1 Missense_Mutation p.A28S 0.12 tolerated(0.34) benign(0.078) TCGA-91-7771-01 19 11565613 11565613 C A ELAVL3 Missense_Mutation p.G278C 0.48 deleterious(0.05) benign(0.035) TCGA-91-7771-01 19 1207037 1207037 G - STK11 Frame_Shift_Del p.A43Pfs*8 0.15 TCGA-91-7771-01 19 13015425 13015425 G A SYCE2 Silent p.L63L 0.05 TCGA-91-7771-01 19 16764904 16764904 T C SMIM7 Missense_Mutation p.R52G 0.05 deleterious(0) probably_damaging(0.994) TCGA-91-7771-01 19 18731311 18731311 C A TMEM59L Missense_Mutation p.P332T 0.17 deleterious(0) possibly_damaging(0.581) TCGA-91-7771-01 19 22155891 22155891 C A ZNF208 Missense_Mutation p.V649F 0.26 tolerated(0.78) benign(0) TCGA-91-7771-01 19 37406057 37406057 G A ZNF829 Missense_Mutation p.P86S 0.12 tolerated(0.31) benign(0.065) TCGA-91-7771-01 19 3942134 3942134 G A NMRK2 Missense_Mutation p.D186N 0.06 deleterious(0.02) probably_damaging(0.927) TCGA-91-7771-01 19 55341578 55341578 G T KIR3DL1 Nonsense_Mutation p.E395* 0.14 TCGA-91-7771-01 19 55493791 55493791 C A NLRP2 Missense_Mutation p.A242E 0.59 deleterious(0) probably_damaging(0.985) TCGA-91-7771-01 19 55493982 55493982 G - NLRP2 Frame_Shift_Del p.D307Tfs*16 0.29 TCGA-91-7771-01 19 6680180 6680180 T C C3 Missense_Mutation p.Y1482C 0.10 deleterious(0) probably_damaging(1) TCGA-91-7771-01 19 9271460 9271460 A G ZNF317 Missense_Mutation p.H380R 0.42 deleterious(0) probably_damaging(0.999) TCGA-91-7771-01 1 11918520 11918520 G A NPPB Missense_Mutation p.R47C 0.30 deleterious(0.03) benign(0.238) TCGA-91-7771-01 1 119575957 119575957 T A WARS2 Silent p.L220L 0.21 TCGA-91-7771-01 1 149900782 149900782 G A MTMR11 3'UTR 0.10 TCGA-91-7771-01 1 152538434 152538434 C A LCE3E Missense_Mutation p.C84F 0.21 tolerated_low_confidence(0.05) unknown(0) TCGA-91-7771-01 1 153995740 153995740 G A NUP210L Nonsense_Mutation p.Q1386* 0.07 TCGA-91-7771-01 1 154931485 154931485 C T PYGO2 Missense_Mutation p.G331S 0.11 deleterious(0) probably_damaging(0.982) TCGA-91-7771-01 1 158225793 158225793 G C CD1A Splice_Site p.X109_splice 0.05 TCGA-91-7771-01 1 158670335 158670335 A T OR6K2 Silent p.A36A 0.10 TCGA-91-7771-01 1 15905431 15905431 C A AGMAT Missense_Mutation p.D215Y 0.09 deleterious(0) probably_damaging(0.997) TCGA-91-7771-01 1 182355392 182355392 C T GLUL Silent p.Q158Q 0.21 TCGA-91-7771-01 1 190234090 190234090 C A BRINP3 Nonsense_Mutation p.E175* 0.07 TCGA-91-7771-01 1 207790041 207790041 G A CR1 Missense_Mutation p.M2261I 0.40 tolerated(0.23) benign(0.119) TCGA-91-7771-01 1 214169983 214169983 T C PROX1 Silent p.A35A 0.06 TCGA-91-7771-01 1 216380727 216380727 A C USH2A Silent p.S1068S 0.06 TCGA-91-7771-01 1 229567839 229567839 G A ACTA1 Missense_Mutation p.S237F 0.10 deleterious_low_confidence(0.02) probably_damaging(0.963) TCGA-91-7771-01 1 240656253 240656253 G A GREM2 3'UTR 0.21 TCGA-91-7771-01 1 248308491 248308491 C G OR2M5 Silent p.L14L 0.11 TCGA-91-7771-01 1 248344224 248344224 G T OR2M2 Nonsense_Mutation p.E313* 0.08 TCGA-91-7771-01 1 248366612 248366612 G T OR2M3 Missense_Mutation p.M81I 0.29 deleterious(0.02) benign(0.078) TCGA-91-7771-01 1 29069381 29069381 C T YTHDF2 Missense_Mutation p.A200V 0.12 tolerated(0.19) benign(0.009) TCGA-91-7771-01 1 33237928 33237928 C T KIAA1522 Missense_Mutation p.P1050S 0.20 deleterious_low_confidence(0.05) possibly_damaging(0.903) TCGA-91-7771-01 1 54509117 54509117 C A TMEM59 Missense_Mutation p.A158S 0.11 deleterious(0) probably_damaging(1) TCGA-91-7771-01 1 57481088 57481088 G T DAB1 Silent p.G304G 0.12 TCGA-91-7771-01 1 62908936 62908936 A G USP1 Missense_Mutation p.E168G 0.07 deleterious(0.01) probably_damaging(0.917) TCGA-91-7771-01 1 75038164 75038164 C T C1orf173 Missense_Mutation p.R1077K 0.03 tolerated(0.35) benign(0.013) TCGA-91-7771-01 20 10273857 10273857 T A SNAP25 Missense_Mutation p.M71K 0.20 deleterious(0) benign(0.221) TCGA-91-7771-01 20 30689307 30689307 C A HCK Nonsense_Mutation p.Y522* 0.11 TCGA-91-7771-01 20 44527020 44527020 G T CTSA Missense_Mutation p.M476I 0.09 deleterious(0.01) possibly_damaging(0.549) TCGA-91-7771-01 20 50234086 50234086 T A ATP9A Silent p.G786G 0.09 TCGA-91-7771-01 20 62592756 62592756 G T ZNF512B Missense_Mutation p.A778D 0.05 tolerated(1) benign(0.001) TCGA-91-7771-01 20 8745793 8745793 A C PLCB1 Missense_Mutation p.E906D 0.21 tolerated(0.09) benign(0.065) TCGA-91-7771-01 21 10862809 10862809 C A IGHV1OR21-1 Silent p.A35A 0.05 TCGA-91-7771-01 2 137814712 137814712 C G THSD7B Missense_Mutation p.H288D 0.13 tolerated(0.16) possibly_damaging(0.774) TCGA-91-7771-01 2 152319779 152319779 G C RIF1 Missense_Mutation p.V1249L 0.11 tolerated(0.2) benign(0.02) TCGA-91-7771-01 2 161025799 161025799 T C ITGB6 Missense_Mutation p.Q314R 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-91-7771-01 2 162719544 162719544 G T SLC4A10 Missense_Mutation p.Q246H 0.15 tolerated(0.73) possibly_damaging(0.814) TCGA-91-7771-01 2 163099877 163099877 A G FAP 5'UTR 0.27 TCGA-91-7771-01 2 166892607 166892607 A G SCN1A Missense_Mutation p.L1127S 0.05 deleterious(0.04) possibly_damaging(0.834) TCGA-91-7771-01 2 175939413 175939413 G A ATF2 Missense_Mutation p.A481V 0.06 deleterious(0.01) benign(0.067) TCGA-91-7771-01 2 179395519 179395519 C T TTN Missense_Mutation p.E35275K 0.08 TCGA-91-7771-01 2 179403902 179403902 C T TTN Silent p.R32920R 0.11 TCGA-91-7771-01 2 179439116 179439116 G T TTN Missense_Mutation p.P23915T 0.05 TCGA-91-7771-01 2 179474087 179474087 G T TTN Missense_Mutation p.P17317H 0.16 TCGA-91-7771-01 2 179554545 179554545 G T TTN Missense_Mutation p.A10614D 0.10 TCGA-91-7771-01 2 179599266 179599266 C A TTN Missense_Mutation p.Q5095H 0.15 TCGA-91-7771-01 2 220146664 220146664 C T DNAJB2 Missense_Mutation p.T78I 0.08 tolerated(0.08) benign(0.1) TCGA-91-7771-01 2 220167119 220167119 C T PTPRN Missense_Mutation p.S245N 0.22 tolerated(0.21) possibly_damaging(0.546) TCGA-91-7771-01 2 233651927 233651927 A T GIGYF2 Missense_Mutation p.E222D 0.34 probably_damaging(0.989) TCGA-91-7771-01 2 237489437 237489437 G C ACKR3 Missense_Mutation p.W110S 0.08 deleterious(0) probably_damaging(1) TCGA-91-7771-01 2 242138778 242138778 C A ANO7 Missense_Mutation p.S173R 0.09 tolerated(0.14) benign(0.11) TCGA-91-7771-01 2 242690764 242690764 G C D2HGDH Silent p.V367V 0.15 TCGA-91-7771-01 2 24413459 24413461 CTT - FAM228A In_Frame_Del p.L194del 0.29 TCGA-91-7771-01 2 25387688 25387688 A C POMC 5'UTR 0.22 TCGA-91-7771-01 2 31571173 31571173 C A XDH Silent p.G1036G 0.27 TCGA-91-7771-01 2 55874559 55874559 C G PNPT1 Missense_Mutation p.V509L 0.13 deleterious(0) probably_damaging(0.989) TCGA-91-7771-01 2 71299832 71299832 C T NAGK Silent p.S185S 0.07 TCGA-91-7771-01 2 79385459 79385459 G C REG3A Missense_Mutation p.P109R 0.06 deleterious(0) probably_damaging(0.996) TCGA-91-7771-01 3 105439010 105439010 C T CBLB Missense_Mutation p.D430N 0.12 tolerated(0.47) benign(0.015) TCGA-91-7771-01 3 113517288 113517288 G T ATP6V1A Nonsense_Mutation p.G497* 0.17 TCGA-91-7771-01 3 164908563 164908563 A T SLITRK3 Missense_Mutation p.L19H 0.35 deleterious(0) probably_damaging(0.998) TCGA-91-7771-01 3 179298679 179298679 C A ACTL6A Intron 0.22 TCGA-91-7771-01 3 20215786 20215786 C T SGOL1 Missense_Mutation p.D413N 0.20 tolerated(0.45) benign(0.015) TCGA-91-7771-01 3 35770882 35770882 T C ARPP21 Missense_Mutation p.V404A 0.20 tolerated(0.48) benign(0.001) TCGA-91-7771-01 3 37379191 37379191 A T GOLGA4 Missense_Mutation p.D2136V 0.24 probably_damaging(0.988) TCGA-91-7771-01 3 38764951 38764951 G T SCN10A Missense_Mutation p.L1108M 0.22 tolerated(0.19) possibly_damaging(0.649) TCGA-91-7771-01 3 48697722 48697722 G T CELSR3 Missense_Mutation p.D782E 0.06 deleterious(0) probably_damaging(0.999) TCGA-91-7771-01 3 49758802 49758802 T G RNF123 3'UTR 0.12 TCGA-91-7771-01 3 49758821 49758821 T G RNF123 3'UTR 0.09 TCGA-91-7771-01 3 49764843 49764843 A T IP6K1 Silent p.A346A 0.21 TCGA-91-7771-01 3 50147085 50147085 G A RBM5 Silent p.Q414Q 0.29 TCGA-91-7771-01 3 52022801 52022801 G C ACY1 Missense_Mutation p.E341Q 0.04 tolerated(0.38) benign(0.367) TCGA-91-7771-01 3 53808688 53808688 G T CACNA1D Silent p.A1415A 0.21 TCGA-91-7771-01 4 100208053 100208053 G T ADH1A Silent p.A71A 0.17 TCGA-91-7771-01 4 107845352 107845352 C G DKK2 Missense_Mutation p.G180A 0.09 deleterious(0) probably_damaging(0.995) TCGA-91-7771-01 4 114275689 114275689 A T ANK2 Missense_Mutation p.Q1972L 0.04 benign(0.149) TCGA-91-7771-01 4 125590612 125590612 C G ANKRD50 Missense_Mutation p.E1274Q 0.19 tolerated(0.58) benign(0.019) TCGA-91-7771-01 4 16025961 16025961 G T PROM1 Silent p.A217A 0.12 TCGA-91-7771-01 4 41270013 41270013 A G UCHL1 Missense_Mutation p.K199E 0.13 tolerated(0.24) benign(0.017) TCGA-91-7771-01 4 42895397 42895397 G T GRXCR1 Silent p.P38P 0.08 TCGA-91-7771-01 4 71232466 71232466 C G SMR3A Missense_Mutation p.H54D 0.27 tolerated_low_confidence(0.38) unknown(0) TCGA-91-7771-01 4 85566417 85566417 A C CDS1 Silent p.R399R 0.28 TCGA-91-7771-01 4 87694047 87694047 C G PTPN13 Missense_Mutation p.T1767S 0.24 tolerated(0.62) benign(0.002) TCGA-91-7771-01 4 98480259 98480259 C G STPG2 Missense_Mutation p.E444Q 0.10 tolerated_low_confidence(0.54) benign(0.014) TCGA-91-7771-01 5 110819868 110819868 G C CAMK4 Missense_Mutation p.E376Q 0.08 deleterious(0.02) benign(0.101) TCGA-91-7771-01 5 140202891 140202891 G T PCDHA5 Missense_Mutation p.A511S 0.09 tolerated_low_confidence(0.28) possibly_damaging(0.561) TCGA-91-7771-01 5 140710575 140710575 C G PCDHGA1 Missense_Mutation p.I108M 0.12 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-91-7771-01 5 145176111 145176111 C A PRELID2 Splice_Site p.X135_splice 0.10 TCGA-91-7771-01 5 156566362 156566362 T A MED7 Missense_Mutation p.Q27H 0.08 deleterious(0.01) benign(0.248) TCGA-91-7771-01 5 168244397 168244397 C A SLIT3 Missense_Mutation p.R234L 0.07 tolerated(0.05) possibly_damaging(0.66) TCGA-91-7771-01 5 23509169 23509169 G T PRDM9 Missense_Mutation p.E9D 0.31 tolerated_low_confidence(0.31) unknown(0) TCGA-91-7771-01 5 35954457 35954457 G - UGT3A1 Frame_Shift_Del p.Y474Mfs*47 0.19 TCGA-91-7771-01 5 38481659 38481659 T G LIFR 3'UTR 0.08 TCGA-91-7771-01 5 40730380 40730380 T A TTC33 Missense_Mutation p.Y96F 0.05 tolerated(0.05) benign(0.093) TCGA-91-7771-01 5 52779494 52779494 A G FST Silent p.L146L 0.16 TCGA-91-7771-01 5 66462786 66462786 C T MAST4 Silent p.R2593R 0.08 TCGA-91-7771-01 5 7724663 7724663 G C ADCY2 Missense_Mutation p.W570S 0.08 deleterious(0.04) probably_damaging(0.919) TCGA-91-7771-01 6 108066250 108066250 G T SCML4 Missense_Mutation p.S195R 0.16 deleterious(0) possibly_damaging(0.885) TCGA-91-7771-01 6 124979407 124979407 G C NKAIN2 Missense_Mutation p.V117L 0.09 tolerated(0.67) benign(0.04) TCGA-91-7771-01 6 1313369 1313369 G A FOXQ1 Missense_Mutation p.E144K 0.10 deleterious(0.02) possibly_damaging(0.794) TCGA-91-7771-01 6 135515583 135515583 A T MYB Silent p.G311G 0.07 TCGA-91-7771-01 6 136599520 136599520 T C BCLAF1 Missense_Mutation p.K167E 0.03 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-91-7771-01 6 142399902 142399902 G T NMBR Silent p.I187I 0.04 TCGA-91-7771-01 6 147581767 147581767 C T STXBP5 Silent p.L150L 0.05 TCGA-91-7771-01 6 149699976 149699976 C G TAB2 Missense_Mutation p.H309D 0.18 tolerated(0.12) benign(0.014) TCGA-91-7771-01 6 16254832 16254832 G A GMPR Missense_Mutation p.E111K 0.35 tolerated(0.19) benign(0.011) TCGA-91-7771-01 6 166578310 166578310 C - T Frame_Shift_Del p.A216Lfs*14 0.20 TCGA-91-7771-01 6 27861512 27861512 C A HIST1H2BO Missense_Mutation p.T91N 0.07 deleterious_low_confidence(0) possibly_damaging(0.874) TCGA-91-7771-01 6 46657740 46657740 C A TDRD6 Silent p.L625L 0.24 TCGA-91-7771-01 6 71665781 71665781 C A B3GAT2 Missense_Mutation p.D118Y 0.14 deleterious(0) probably_damaging(1) TCGA-91-7771-01 6 83963432 83963432 A C ME1 Missense_Mutation p.F244V 0.12 deleterious(0) probably_damaging(1) TCGA-91-7771-01 7 1275566 1275566 C A UNCX Missense_Mutation p.S183R 0.17 deleterious(0) probably_damaging(0.989) TCGA-91-7771-01 7 134346228 134346228 T G BPGM 5'UTR 0.36 TCGA-91-7771-01 7 142983074 142983074 G C TMEM139 Silent p.G8G 0.11 TCGA-91-7771-01 7 146536856 146536856 G C CNTNAP2 Missense_Mutation p.D88H 0.17 deleterious(0) probably_damaging(0.999) TCGA-91-7771-01 7 150883746 150883746 C A ASB10 Missense_Mutation p.R106I 0.16 tolerated(0.06) possibly_damaging(0.905) TCGA-91-7771-01 7 150883748 150883748 T G ASB10 Splice_Site p.X106_splice 0.15 TCGA-91-7771-01 7 15652018 15652018 G A MEOX2 Silent p.H303H 0.32 TCGA-91-7771-01 7 158449054 158449054 G A NCAPG2 Silent p.V762V 0.10 TCGA-91-7771-01 7 56045919 56045919 C G GBAS Missense_Mutation p.L65V 0.06 deleterious(0) possibly_damaging(0.893) TCGA-91-7771-01 7 76610277 76610277 G T UPK3B Intron 0.39 TCGA-91-7771-01 7 76825791 76825791 G T FGL2 Nonsense_Mutation p.Y375* 0.04 TCGA-91-7771-01 7 82546079 82546079 G T PCLO Missense_Mutation p.S3741R 0.10 unknown(0) TCGA-91-7771-01 8 131792846 131792846 G T ADCY8 Silent p.P1182P 0.04 TCGA-91-7771-01 8 144946569 144946569 C T EPPK1 Missense_Mutation p.G285S 0.07 benign(0.041) TCGA-91-7771-01 8 144947419 144947419 C A EPPK1 Translation_Start_Site p.M1? 0.15 benign(0) TCGA-91-7771-01 8 27348722 27348722 C T EPHX2 5'UTR 0.17 TCGA-91-7771-01 8 38810885 38810885 G T PLEKHA2 Missense_Mutation p.G258V 0.08 deleterious(0.01) probably_damaging(0.909) TCGA-91-7771-01 8 42183567 42183567 C G IKBKB Missense_Mutation p.S689C 0.47 tolerated(0.18) possibly_damaging(0.77) TCGA-91-7771-01 8 71068640 71068640 G C NCOA2 Missense_Mutation p.P654A 0.38 tolerated(0.1) possibly_damaging(0.472) TCGA-91-7771-01 8 72211347 72211347 G T EYA1 Missense_Mutation p.A254D 0.04 deleterious(0.04) benign(0.425) TCGA-91-7771-01 9 100433388 100433388 G T NCBP1 Missense_Mutation p.Q760H 0.11 deleterious(0.02) possibly_damaging(0.615) TCGA-91-7771-01 9 101014085 101014085 C T TBC1D2 Missense_Mutation p.V165I 0.40 tolerated(0.18) benign(0.031) TCGA-91-7771-01 9 107380196 107380196 C G OR13C9 Missense_Mutation p.C97S 0.14 deleterious(0) probably_damaging(0.996) TCGA-91-7771-01 9 136310829 136310829 A G ADAMTS13 Missense_Mutation p.T874A 0.37 tolerated(0.72) benign(0.002) TCGA-91-7771-01 9 138379677 138379677 G - PPP1R26 Frame_Shift_Del p.L1109Cfs*45 0.19 TCGA-91-7771-01 9 138413352 138413352 C G LCN1 Silent p.P3P 0.23 TCGA-91-7771-01 9 139110934 139110934 G A QSOX2 Missense_Mutation p.P300S 0.40 tolerated(0.34) benign(0.271) TCGA-91-7771-01 9 16738407 16738407 G T BNC2 Missense_Mutation p.P27Q 0.13 tolerated_low_confidence(0.74) unknown(0) TCGA-91-7771-01 9 21077496 21077496 C A IFNB1 Nonsense_Mutation p.E125* 0.24 TCGA-91-7771-01 9 34379708 34379708 G C C9orf24 Missense_Mutation p.P242R 0.06 deleterious(0) benign(0.244) TCGA-91-7771-01 9 86294696 86294696 C T UBQLN1 Missense_Mutation p.M235I 0.16 deleterious(0) benign(0.132) TCGA-91-7771-01 9 90535394 90535394 C T SPATA31C1 RNA 0.09 TCGA-91-7771-01 9 95264875 95264875 G A ECM2 Silent p.T508T 0.19 TCGA-91-7771-01 9 98220516 98220516 C T PTCH1 Missense_Mutation p.D983N 0.15 tolerated(0.19) benign(0.026) TCGA-91-7771-01 X 107404937 107404937 A C COL4A6 Silent p.G1416G 0.12 TCGA-91-7771-01 X 146341182 146341182 A T MIR509-3 RNA 0.10 TCGA-91-7771-01 X 153171917 153171917 C A AVPR2 Intron 0.53 TCGA-91-7771-01 X 17820044 17820044 C A RAI2 Missense_Mutation p.M29I 0.24 deleterious(0.02) possibly_damaging(0.679) TCGA-91-7771-01 X 53612061 53612061 T C HUWE1 Missense_Mutation p.I1638V 0.19 probably_damaging(0.984) TCGA-91-7771-01 X 73815767 73815767 C T RLIM Missense_Mutation p.A16T 0.23 tolerated(0.28) unknown(0) TCGA-91-7771-01 X 77912743 77912743 A G ZCCHC5 Missense_Mutation p.L392P 0.21 deleterious(0) probably_damaging(0.946) TCGA-91-7771-01 X 78427266 78427266 C G GPR174 Missense_Mutation p.F254L 0.19 tolerated(0.37) benign(0.39) TCGA-91-7771-01 Y 2829423 2829423 A T ZFY Missense_Mutation p.I124F 0.16 tolerated(0.18) benign(0.072) TCGA-91-8496-01 10 38407308 38407308 C T ZNF37A Missense_Mutation p.P410L 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-91-8496-01 10 48370853 48370853 G C ZNF488 Missense_Mutation p.R107S 0.08 tolerated(0.11) benign(0.109) TCGA-91-8496-01 11 46515726 46515726 C G AMBRA1 Missense_Mutation p.A700P 0.12 deleterious_low_confidence(0.01) probably_damaging(0.931) TCGA-91-8496-01 11 4903362 4903362 C T OR51T1 Missense_Mutation p.T105M 0.05 deleterious(0) probably_damaging(0.972) TCGA-91-8496-01 11 62566167 62566167 T C NXF1 Intron 0.18 TCGA-91-8496-01 11 95712515 95712515 G A MAML2 Missense_Mutation p.A1023V 0.08 unknown(0) TCGA-91-8496-01 12 123286393 123286393 C T CCDC62 Missense_Mutation p.P567L 0.06 tolerated(0.56) benign(0.001) TCGA-91-8496-01 12 133248870 133248870 C T POLE Silent p.E575E 0.13 TCGA-91-8496-01 12 5963299 5963299 G A ANO2 Silent p.S177S 0.25 TCGA-91-8496-01 13 95840728 95840728 G A ABCC4 Silent p.V444V 0.22 TCGA-91-8496-01 14 105639306 105639306 C T NUDT14 3'UTR 0.45 TCGA-91-8496-01 14 21360107 21360107 C T RNASE3 Missense_Mutation p.R88C 0.04 tolerated(0.07) possibly_damaging(0.672) TCGA-91-8496-01 14 23895277 23895277 G A MYH7 Silent p.N686N 0.17 TCGA-91-8496-01 15 101605814 101605814 C T LRRK1 Silent p.C1724C 0.21 TCGA-91-8496-01 16 23691507 23691507 C T PLK1 Nonsense_Mutation p.R171* 0.04 TCGA-91-8496-01 16 2815682 2815682 C G SRRM2 Missense_Mutation p.S1718C 0.08 unknown(0) TCGA-91-8496-01 17 25936345 25936345 C T KSR1 Nonsense_Mutation p.R624* 0.19 TCGA-91-8496-01 18 59780543 59780543 G - PIGN Frame_Shift_Del p.L420Ffs*5 0.21 TCGA-91-8496-01 19 1014372 1014372 C T TMEM259 Missense_Mutation p.G109D 0.23 deleterious(0) probably_damaging(1) TCGA-91-8496-01 19 55143067 55143067 G C LILRB1 Missense_Mutation p.E63Q 0.05 deleterious(0.02) possibly_damaging(0.491) TCGA-91-8496-01 1 150551665 150551665 C A MCL1 Silent p.P114P 0.13 TCGA-91-8496-01 1 203192374 203192374 G A CHIT1 Missense_Mutation p.A165V 0.15 deleterious(0) possibly_damaging(0.698) TCGA-91-8496-01 1 248201769 248201769 T A OR2L2 Missense_Mutation p.L67H 0.07 deleterious(0.02) benign(0.152) TCGA-91-8496-01 1 36306786 36306786 C T AGO4 Missense_Mutation p.P582L 0.46 deleterious(0.02) possibly_damaging(0.831) TCGA-91-8496-01 1 900406 900406 C T KLHL17 Silent p.S588S 0.18 TCGA-91-8496-01 21 47974581 47974581 C T DIP2A Missense_Mutation p.T1083I 0.47 deleterious(0.03) probably_damaging(0.992) TCGA-91-8496-01 2 48807854 48807854 C T STON1-GTF2A1L Missense_Mutation p.P28S 0.08 tolerated(0.13) possibly_damaging(0.735) TCGA-91-8496-01 3 138724643 138724643 G A PRR23A Silent p.Y156Y 0.32 TCGA-91-8496-01 3 184922343 184922343 T A EHHADH Silent p.L257L 0.26 TCGA-91-8496-01 3 38182083 38182083 G T MYD88 Missense_Mutation p.G236V 0.10 tolerated_low_confidence(0.11) benign(0) TCGA-91-8496-01 3 50255129 50255129 G A SLC38A3 RNA 0.34 TCGA-91-8496-01 4 102014998 102014998 A - PPP3CA Frame_Shift_Del p.F239Lfs*64 0.21 TCGA-91-8496-01 4 15627468 15627469 - A FBXL5 Frame_Shift_Ins p.L419Ffs*16 0.10 TCGA-91-8496-01 5 140166068 140166068 C T PCDHA1 Missense_Mutation p.R65W 0.23 deleterious_low_confidence(0.01) probably_damaging(0.959) TCGA-91-8496-01 6 127768034 127768034 G C KIAA0408 Missense_Mutation p.T477S 0.25 tolerated(0.63) benign(0.022) TCGA-91-8496-01 6 127836123 127836123 G A SOGA3 Nonsense_Mutation p.Q391* 0.23 TCGA-91-8496-01 6 43322938 43322938 A G ZNF318 Missense_Mutation p.F712L 0.20 benign(0.279) TCGA-91-8496-01 7 102760466 102760466 G A NAPEPLD Missense_Mutation p.R167C 0.20 tolerated(0.08) benign(0.001) TCGA-91-8496-01 7 149493797 149493797 G T SSPO RNA 0.17 TCGA-91-8496-01 7 150718370 150718370 C T ATG9B Missense_Mutation p.G290S 0.08 tolerated(0.43) possibly_damaging(0.462) TCGA-91-8496-01 7 16649287 16649287 G A ANKMY2 Nonsense_Mutation p.Q284* 0.07 TCGA-91-8496-01 8 12957364 12957365 - G DLC1 Frame_Shift_Ins p.S828Lfs*6 0.21 TCGA-91-8496-01 8 132968110 132968110 C T EFR3A Missense_Mutation p.A245V 0.06 deleterious(0) probably_damaging(0.969) TCGA-91-8496-01 9 101061590 101061590 G T GABBR2 Missense_Mutation p.P820T 0.29 tolerated(0.07) probably_damaging(0.997) TCGA-91-8496-01 X 20222213 20222213 T C RPS6KA3 Silent p.L84L 0.08 TCGA-91-8497-01 10 114901025 114901025 C T TCF7L2 Missense_Mutation p.T212M 0.08 deleterious(0) probably_damaging(0.999) TCGA-91-8497-01 10 73051292 73051292 C T UNC5B Silent p.I466I 0.05 TCGA-91-8497-01 10 92982639 92982639 A T PCGF5 Missense_Mutation p.Q4L 0.26 deleterious(0.04) benign(0.014) TCGA-91-8497-01 10 98165089 98165089 G T TLL2 Silent p.I389I 0.23 TCGA-91-8497-01 11 108032653 108032653 G A NPAT Missense_Mutation p.P1054S 0.12 tolerated(1) benign(0.022) TCGA-91-8497-01 11 59282725 59282725 T A OR4D9 Missense_Mutation p.S114T 0.11 tolerated(0.09) benign(0.031) TCGA-91-8497-01 11 6262729 6262729 G T CNGA4 Missense_Mutation p.R329L 0.10 deleterious(0) benign(0.283) TCGA-91-8497-01 11 70338468 70338468 C A SHANK2 Missense_Mutation p.R805L 0.14 deleterious(0.01) benign(0.064) TCGA-91-8497-01 12 53453642 53453642 G - TENC1 Frame_Shift_Del p.L749Ffs*17 0.16 TCGA-91-8497-01 13 36909909 36909909 T G SPG20 Missense_Mutation p.Y20S 0.05 deleterious(0) probably_damaging(0.995) TCGA-91-8497-01 15 59406798 59406798 T C CCNB2 Silent p.Y141Y 0.07 TCGA-91-8497-01 15 62210398 62210398 A - VPS13C Frame_Shift_Del p.L2566Hfs*7 0.10 TCGA-91-8497-01 16 17235071 17235071 G A XYLT1 Missense_Mutation p.S509F 0.18 deleterious(0) probably_damaging(0.987) TCGA-91-8497-01 16 18812771 18812771 A C ARL6IP1 Missense_Mutation p.N6K 0.21 deleterious(0.01) benign(0.058) TCGA-91-8497-01 16 2436255 2436255 A - ABCA17P Intron 0.25 TCGA-91-8497-01 16 30094153 30094153 G T PPP4C Silent p.L96L 0.26 TCGA-91-8497-01 16 68055458 68055458 C G DDX28 3'UTR 0.28 TCGA-91-8497-01 17 3402307 3402307 C T ASPA Silent p.Y289Y 0.12 TCGA-91-8497-01 17 48549836 48549836 G T ACSF2 Silent p.T457T 0.17 TCGA-91-8497-01 18 44260239 44260239 G A ST8SIA5 Silent p.I299I 0.27 TCGA-91-8497-01 19 34302768 34302768 G T KCTD15 Intron 0.23 TCGA-91-8497-01 19 42866330 42866330 C T MEGF8 Missense_Mutation p.R1870C 0.17 deleterious(0) probably_damaging(0.983) TCGA-91-8497-01 19 56953137 56953137 T C ZNF667 Silent p.T409T 0.20 TCGA-91-8497-01 19 901461 901461 G A R3HDM4 Silent p.G104G 0.35 TCGA-91-8497-01 1 215256725 215256725 C T KCNK2 5'UTR 0.04 TCGA-91-8497-01 1 235918847 235918847 C T LYST Missense_Mutation p.R2387Q 0.06 tolerated(0.67) benign(0.012) TCGA-91-8497-01 1 75614328 75614328 A G LHX8 Silent p.K257K 0.07 TCGA-91-8497-01 20 2816300 2816300 G T PCED1A Silent p.G391G 0.16 TCGA-91-8497-01 20 61537323 61537323 T C DIDO1 Missense_Mutation p.T502A 0.19 probably_damaging(0.996) TCGA-91-8497-01 22 29884864 29884864 G A NEFH Missense_Mutation p.R412Q 0.30 deleterious(0.01) unknown(0) TCGA-91-8497-01 22 47290724 47290724 G A TBC1D22A Silent p.L294L 0.22 TCGA-91-8497-01 2 155555664 155555664 A T KCNJ3 Missense_Mutation p.N126I 0.05 deleterious(0) probably_damaging(0.999) TCGA-91-8497-01 2 196801402 196801402 G A DNAH7 Missense_Mutation p.R1065C 0.28 deleterious(0) probably_damaging(1) TCGA-91-8497-01 2 203776321 203776321 G A WDR12 5'UTR 0.38 TCGA-91-8497-01 2 230744779 230744779 T C TRIP12 Missense_Mutation p.N6S 0.25 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-91-8497-01 2 30993189 30993189 C T CAPN13 Missense_Mutation p.A172T 0.07 deleterious(0) probably_damaging(1) TCGA-91-8497-01 3 107517465 107517465 G A BBX Missense_Mutation p.E817K 0.15 deleterious(0) probably_damaging(0.991) TCGA-91-8497-01 3 193854779 193854780 - GAC HES1 In_Frame_Ins p.D79dup 0.10 TCGA-91-8497-01 3 47041640 47041640 C G NBEAL2 Missense_Mutation p.P1351A 0.22 deleterious(0.05) probably_damaging(0.912) TCGA-91-8497-01 5 141041418 141041418 G T ARAP3 Intron 0.23 TCGA-91-8497-01 5 149501578 149501578 C T PDGFRB Missense_Mutation p.D737N 0.09 tolerated(0.34) benign(0.136) TCGA-91-8497-01 6 128297829 128297829 C T PTPRK Silent p.R1320R 0.27 TCGA-91-8497-01 6 31829823 31829823 G C NEU1 Missense_Mutation p.S102C 0.20 deleterious(0.02) probably_damaging(0.95) TCGA-91-8497-01 6 31857352 31857352 G C EHMT2 Missense_Mutation p.L298V 0.21 tolerated(0.48) benign(0.138) TCGA-91-8497-01 6 52144355 52144355 C A MCM3 Missense_Mutation p.V237F 0.08 deleterious(0) possibly_damaging(0.458) TCGA-91-8497-01 7 73609524 73609524 C A EIF4H Silent p.L211L 0.08 TCGA-91-8497-01 8 23539110 23539110 G T NKX3-1 Nonsense_Mutation p.S110* 0.27 TCGA-91-8497-01 8 30623911 30623911 G A UBXN8 RNA 0.26 TCGA-91-8497-01 8 39644549 39644549 C T ADAM2 Missense_Mutation p.G279S 0.13 deleterious(0) probably_damaging(0.996) TCGA-91-8497-01 8 6338316 6338316 C A MCPH1 Missense_Mutation p.H685Q 0.23 deleterious(0) probably_damaging(1) TCGA-91-8497-01 8 72935073 72935073 T C TRPA1 3'UTR 0.24 TCGA-91-8497-01 9 130932312 130932312 G A CIZ1 Missense_Mutation p.T673I 0.22 deleterious(0) probably_damaging(0.998) TCGA-91-8497-01 9 133376380 133376380 G A ASS1 Missense_Mutation p.R404H 0.10 tolerated(0.07) benign(0.022) TCGA-91-8497-01 X 100662861 100662861 C A GLA Missense_Mutation p.G11C 0.19 deleterious_low_confidence(0.04) benign(0.024) TCGA-91-8497-01 X 106046175 106046175 G A TBC1D8B Missense_Mutation p.R31H 0.05 deleterious(0) probably_damaging(0.999) TCGA-91-8497-01 X 107310293 107310293 A G VSIG1 Missense_Mutation p.Y150C 0.22 deleterious(0) probably_damaging(1) TCGA-91-8497-01 X 150349712 150349712 C A GPR50 Missense_Mutation p.P553T 0.18 tolerated_low_confidence(0.19) benign(0.023) TCGA-91-8497-01 X 3242278 3242278 C T MXRA5 Missense_Mutation p.G483E 0.12 tolerated(1) benign(0.005) TCGA-91-8497-01 X 49063212 49063212 C T CACNA1F Missense_Mutation p.R1790H 0.06 tolerated(0.05) benign(0.072) TCGA-91-8497-01 X 82763849 82763849 G A POU3F4 Missense_Mutation p.G173S 0.19 tolerated(0.38) benign(0.002) TCGA-91-8499-01 10 115526174 115526174 A G PLEKHS1 Silent p.K5K 0.81 TCGA-91-8499-01 10 27538979 27538979 T A RP11-85G18.6 Intron 0.26 TCGA-91-8499-01 10 29779930 29779930 G - SVIL Frame_Shift_Del p.E1347Sfs*19 0.18 TCGA-91-8499-01 10 51556790 51556790 C A MSMB Nonsense_Mutation p.S50* 0.31 TCGA-91-8499-01 10 72537055 72537055 C - TBATA Frame_Shift_Del p.A182Qfs*63 0.33 TCGA-91-8499-01 10 8006476 8006476 G C TAF3 Missense_Mutation p.V335L 0.26 tolerated_low_confidence(0.16) benign(0.013) TCGA-91-8499-01 10 89118184 89118184 T C NUTM2D Silent p.N54N 0.31 TCGA-91-8499-01 10 89717708 89717708 C T PTEN Nonsense_Mutation p.Q245* 0.82 TCGA-91-8499-01 11 103907529 103907529 C A DDI1 5'UTR 0.16 TCGA-91-8499-01 11 105009606 105009606 G T CARD18 Nonsense_Mutation p.C69* 0.62 TCGA-91-8499-01 11 11354341 11354341 T G GALNT18 Missense_Mutation p.K439T 0.28 tolerated(0.12) possibly_damaging(0.724) TCGA-91-8499-01 11 114569409 114569409 C T NXPE2 Nonsense_Mutation p.Q259* 0.80 TCGA-91-8499-01 11 123813971 123813971 G T OR6T1 Missense_Mutation p.T192N 0.79 deleterious(0) possibly_damaging(0.795) TCGA-91-8499-01 11 1257639 1257639 G C MUC5B Missense_Mutation p.E968D 0.59 unknown(0) TCGA-91-8499-01 11 18755103 18755103 C A PTPN5 Silent p.R360R 0.22 TCGA-91-8499-01 11 20639378 20639378 C T SLC6A5 Missense_Mutation p.A403V 0.54 deleterious(0) benign(0.247) TCGA-91-8499-01 11 2417125 2417125 G C CD81 Silent p.L162L 0.23 TCGA-91-8499-01 11 27721039 27721039 G C BDNF Intron 0.26 TCGA-91-8499-01 11 3681212 3681212 C A ART1 Missense_Mutation p.H155N 0.51 deleterious(0.05) possibly_damaging(0.861) TCGA-91-8499-01 11 4389061 4389061 A G OR52B4 Silent p.Y155Y 0.24 TCGA-91-8499-01 11 46403644 46403644 G T MDK Missense_Mutation p.A13S 0.38 tolerated(0.27) benign(0.008) TCGA-91-8499-01 11 50003179 50003179 G T OR4C12 Missense_Mutation p.L287I 0.27 deleterious_low_confidence(0) possibly_damaging(0.556) TCGA-91-8499-01 11 5254250 5254251 - AGCCT HBD Frame_Shift_Ins p.A130Rfs*? 0.22 TCGA-91-8499-01 11 5270772 5270772 G T HBG1 Silent p.G47G 0.15 TCGA-91-8499-01 11 55321867 55321867 C A OR4C15 Missense_Mutation p.L29M 0.52 tolerated_low_confidence(0.09) benign(0.006) TCGA-91-8499-01 11 55606379 55606379 T C OR5D16 Missense_Mutation p.I51T 0.26 deleterious(0.03) possibly_damaging(0.887) TCGA-91-8499-01 11 55890566 55890566 A T OR8H3 Missense_Mutation p.T240S 0.46 deleterious(0) probably_damaging(0.973) TCGA-91-8499-01 11 56468060 56468060 C A OR9G1 Nonsense_Mutation p.S66* 0.33 TCGA-91-8499-01 11 56511139 56511139 T A OR9G4 Missense_Mutation p.Y50F 0.63 deleterious(0) probably_damaging(0.996) TCGA-91-8499-01 11 6190697 6190697 G T OR52B2 Missense_Mutation p.P287Q 0.64 deleterious(0) probably_damaging(1) TCGA-91-8499-01 11 62384543 62384543 C T B3GAT3 Silent p.E178E 0.55 TCGA-91-8499-01 11 67066550 67066550 C - ANKRD13D Frame_Shift_Del p.W252Gfs*25 0.24 TCGA-91-8499-01 11 67121003 67121003 G T POLD4 5'UTR 0.27 TCGA-91-8499-01 11 6867698 6867698 G A OR10A5 Nonsense_Mutation p.W262* 0.49 TCGA-91-8499-01 11 70505957 70505957 T C SHANK2 Silent p.L680L 0.22 TCGA-91-8499-01 11 840289 840289 C G POLR2L 3'UTR 0.40 TCGA-91-8499-01 11 85342768 85342768 G T TMEM126B Missense_Mutation p.S40I 0.12 tolerated(0.37) benign(0.015) TCGA-91-8499-01 11 88386447 88386447 G T GRM5 Missense_Mutation p.P346T 0.19 tolerated(0.08) probably_damaging(1) TCGA-91-8499-01 11 96092177 96092177 C G CCDC82 Missense_Mutation p.E516Q 0.17 deleterious(0.05) benign(0.143) TCGA-91-8499-01 12 113448374 113448374 T A OAS2 3'UTR 0.66 TCGA-91-8499-01 12 113733982 113733982 C T TPCN1 3'UTR 0.44 TCGA-91-8499-01 12 11420195 11420195 G T PRB3 Silent p.P287P 0.55 TCGA-91-8499-01 12 114352884 114352884 G C RBM19 Silent p.A816A 0.75 TCGA-91-8499-01 12 124268592 124268592 C G DNAH10 Silent p.V305V 0.26 TCGA-91-8499-01 12 124358192 124358192 G T DNAH10 Missense_Mutation p.D2507Y 0.51 probably_damaging(0.91) TCGA-91-8499-01 12 129559566 129559566 G T TMEM132D Silent p.G718G 0.38 TCGA-91-8499-01 12 20885979 20885979 C T SLCO1C1 Silent p.S441S 0.30 TCGA-91-8499-01 12 25232337 25232337 A G LRMP Missense_Mutation p.Y26C 0.17 tolerated_low_confidence(0.29) benign(0.006) TCGA-91-8499-01 12 27813814 27813814 C T PPFIBP1 Intron 0.50 TCGA-91-8499-01 12 32884845 32884845 C T DNM1L Missense_Mutation p.L472F 0.37 deleterious(0) probably_damaging(0.983) TCGA-91-8499-01 12 52314681 52314681 A G ACVRL1 3'UTR 0.58 TCGA-91-8499-01 12 56122200 56122200 C A CD63 Intron 0.40 TCGA-91-8499-01 12 56330273 56330273 G C DGKA 5'UTR 0.21 TCGA-91-8499-01 12 57346650 57346650 C A RDH16 Nonsense_Mutation p.E233* 0.28 TCGA-91-8499-01 12 58160730 58160730 G C CYP27B1 Nonsense_Mutation p.S32* 0.18 TCGA-91-8499-01 12 63042368 63042368 C A PPM1H Silent p.L482L 0.44 TCGA-91-8499-01 12 63195772 63195772 C T PPM1H Missense_Mutation p.E194K 0.17 tolerated(0.48) benign(0.231) TCGA-91-8499-01 12 7653945 7653945 C A CD163 Nonsense_Mutation p.E83* 0.40 TCGA-91-8499-01 12 8327874 8327874 G A ZNF705A Missense_Mutation p.E64K 0.33 deleterious(0.02) possibly_damaging(0.636) TCGA-91-8499-01 13 103440194 103440194 T C KDELC1 Missense_Mutation p.K458R 0.85 tolerated(0.62) benign(0.022) TCGA-91-8499-01 13 108518622 108518622 G T FAM155A Missense_Mutation p.A108E 0.78 deleterious(0.01) probably_damaging(0.998) TCGA-91-8499-01 13 22275530 22275530 G C FGF9 Missense_Mutation p.D195H 0.75 deleterious(0.03) possibly_damaging(0.472) TCGA-91-8499-01 13 26127951 26127951 G T ATP8A2 Nonsense_Mutation p.G360* 0.65 TCGA-91-8499-01 13 26127952 26127952 G T ATP8A2 Missense_Mutation p.G360V 0.65 tolerated(0.38) benign(0.331) TCGA-91-8499-01 13 77595702 77595702 C G FBXL3 Silent p.L98L 0.85 TCGA-91-8499-01 14 104040453 104040453 G A RP11-73M18.2 Missense_Mutation p.E124K 0.16 tolerated_low_confidence(0.19) possibly_damaging(0.621) TCGA-91-8499-01 14 19988082 19988082 C A POTEM 3'UTR 0.24 TCGA-91-8499-01 14 20388993 20388993 T C OR4K5 Silent p.F76F 0.18 TCGA-91-8499-01 14 21679382 21679382 T - HNRNPC Frame_Shift_Del p.%3D 0.31 TCGA-91-8499-01 14 23873506 23873506 A G MYH6 Missense_Mutation p.F245S 0.38 deleterious(0.01) probably_damaging(0.961) TCGA-91-8499-01 14 23888743 23888743 G T MYH7 Missense_Mutation p.R1268S 0.43 deleterious(0.03) probably_damaging(0.984) TCGA-91-8499-01 14 24527070 24527070 G A LRRC16B Missense_Mutation p.R400H 0.41 deleterious(0) possibly_damaging(0.815) TCGA-91-8499-01 14 24685240 24685252 AGGCAGCCACCCT - MDP1 5'UTR 0.43 TCGA-91-8499-01 14 28734414 28734414 C G BNIP3P1 RNA 0.35 TCGA-91-8499-01 14 44973590 44973590 C A FSCB 3'UTR 0.38 TCGA-91-8499-01 14 50360556 50360556 G T ARF6 Missense_Mutation p.K34N 0.33 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-91-8499-01 14 56084834 56084834 A G KTN1 Missense_Mutation p.K272E 0.18 deleterious(0) probably_damaging(0.986) TCGA-91-8499-01 14 56763638 56763638 G T PELI2 Missense_Mutation p.R339S 0.43 tolerated(0.09) probably_damaging(0.942) TCGA-91-8499-01 14 61115466 61115466 A G SIX1 Missense_Mutation p.Y148H 0.05 deleterious(0.02) probably_damaging(1) TCGA-91-8499-01 14 63447677 63447677 C A KCNH5 Missense_Mutation p.R285S 0.53 deleterious(0.01) probably_damaging(0.998) TCGA-91-8499-01 14 67346715 67346715 G A GPHN Missense_Mutation p.G118E 0.29 tolerated(0.28) possibly_damaging(0.532) TCGA-91-8499-01 14 70712709 70712709 C T ADAM21P1 RNA 0.15 TCGA-91-8499-01 14 70925885 70925885 G A ADAM21 Missense_Mutation p.D557N 0.19 deleterious(0.05) benign(0.209) TCGA-91-8499-01 14 74823665 74823665 C A VRTN Nonsense_Mutation p.S60* 0.54 TCGA-91-8499-01 14 74824665 74824665 G T VRTN Silent p.A393A 0.50 TCGA-91-8499-01 14 81610701 81610705 AACAC - TSHR 3'UTR 0.32 TCGA-91-8499-01 14 91146852 91146852 T C TTC7B Silent p.E326E 0.21 TCGA-91-8499-01 14 94395127 94395127 G C FAM181A Missense_Mutation p.E228Q 0.22 deleterious(0.05) probably_damaging(0.976) TCGA-91-8499-01 15 101605805 101605805 G A LRRK1 Silent p.L1721L 0.25 TCGA-91-8499-01 15 25449576 25449576 G A SNORD115-19 RNA 0.34 TCGA-91-8499-01 15 28483351 28483351 C A HERC2 Missense_Mutation p.G1254V 0.29 probably_damaging(0.938) TCGA-91-8499-01 15 28493761 28493761 G A HERC2 Nonsense_Mutation p.Q1058* 0.39 TCGA-91-8499-01 15 38800188 38800188 C T RASGRP1 Missense_Mutation p.M327I 0.42 deleterious(0.01) possibly_damaging(0.823) TCGA-91-8499-01 15 49447745 49447745 C G COPS2 Missense_Mutation p.D11H 0.32 deleterious(0) unknown(0) TCGA-91-8499-01 15 53994429 53994429 C A WDR72 Missense_Mutation p.V491L 0.36 deleterious(0) probably_damaging(0.999) TCGA-91-8499-01 15 56387950 56387950 C T RFX7 Missense_Mutation p.R659Q 0.36 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-91-8499-01 15 63011990 63011990 C T TLN2 Silent p.L968L 0.52 TCGA-91-8499-01 15 71211467 71211467 G T LRRC49 Missense_Mutation p.D221Y 0.31 deleterious(0.02) possibly_damaging(0.891) TCGA-91-8499-01 15 77407467 77407467 G A PEAK1 Silent p.D1424D 0.34 TCGA-91-8499-01 15 82533674 82533674 G A EFTUD1 Silent p.T105T 0.34 TCGA-91-8499-01 15 85341189 85341189 C T ZNF592 Missense_Mutation p.A830V 0.36 deleterious(0.03) probably_damaging(0.999) TCGA-91-8499-01 16 1397985 1397985 C T BAIAP3 Missense_Mutation p.T1074M 0.30 deleterious(0) probably_damaging(0.998) TCGA-91-8499-01 16 20554263 20554263 G C ACSM2B Missense_Mutation p.I494M 0.35 deleterious(0) benign(0.377) TCGA-91-8499-01 16 20566770 20566770 C A ACSM2B Missense_Mutation p.Q139H 0.44 deleterious(0) probably_damaging(0.971) TCGA-91-8499-01 16 2094682 2094682 C G NTHL1 Missense_Mutation p.Q166H 0.29 deleterious(0.02) benign(0.1) TCGA-91-8499-01 16 30583719 30583719 C A ZNF688 5'UTR 0.43 TCGA-91-8499-01 16 62055140 62055140 C G CDH8 Missense_Mutation p.L56F 0.72 tolerated(0.13) benign(0.112) TCGA-91-8499-01 16 68405930 68405930 G T SMPD3 Missense_Mutation p.P52Q 0.94 deleterious(0.05) possibly_damaging(0.674) TCGA-91-8499-01 16 72164550 72164551 - T PMFBP1 Frame_Shift_Ins p.L507Tfs*33 0.12 TCGA-91-8499-01 16 81076028 81076028 G A ATMIN Missense_Mutation p.R202K 0.63 deleterious(0.05) possibly_damaging(0.875) TCGA-91-8499-01 17 16012211 16012211 G A NCOR1 Missense_Mutation p.R691C 0.80 probably_damaging(0.972) TCGA-91-8499-01 17 19555031 19555031 G A ALDH3A2 Missense_Mutation p.G109R 0.31 deleterious(0) probably_damaging(0.996) TCGA-91-8499-01 17 26094769 26094769 C A NOS2 Missense_Mutation p.R710M 0.51 deleterious(0) probably_damaging(0.966) TCGA-91-8499-01 17 34236409 34236409 C T AC015849.16 RNA 0.18 TCGA-91-8499-01 17 36708207 36708207 G A SRCIN1 Missense_Mutation p.A881V 0.48 deleterious(0.04) benign(0.068) TCGA-91-8499-01 17 39525925 39525925 G A KRT33B Silent p.C26C 0.17 TCGA-91-8499-01 17 41222985 41222985 C G BRCA1 Missense_Mutation p.R1670T 0.51 deleterious(0.02) benign(0.316) TCGA-91-8499-01 17 42882137 42882137 T C GJC1 Missense_Mutation p.D350G 0.53 tolerated(0.07) benign(0.239) TCGA-91-8499-01 17 43227287 43227287 G C HEXIM1 Missense_Mutation p.E244Q 0.43 tolerated(0.07) probably_damaging(0.973) TCGA-91-8499-01 17 48465442 48465442 G A LRRC59 Missense_Mutation p.R161W 0.24 deleterious(0) probably_damaging(0.936) TCGA-91-8499-01 17 65907829 65907829 G A BPTF Missense_Mutation p.G1277R 0.60 possibly_damaging(0.493) TCGA-91-8499-01 17 7297453 7297453 G A TMEM256-PLSCR3 5'UTR 0.81 TCGA-91-8499-01 17 73571153 73571153 C T LLGL2 3'UTR 0.19 TCGA-91-8499-01 17 7577552 7577569 CATGCAGGAACTGTTACA - TP53 In_Frame_Del p.C238_M243del 0.68 TCGA-91-8499-01 17 7756561 7756561 G A KDM6B Missense_Mutation p.E1591K 0.92 benign(0.309) TCGA-91-8499-01 18 14522263 14522263 C G POTEC Missense_Mutation p.E467Q 0.30 tolerated(0.12) benign(0.324) TCGA-91-8499-01 18 20953708 20953708 C A TMEM241 Missense_Mutation p.A135S 0.60 tolerated(0.55) benign(0.178) TCGA-91-8499-01 18 28956823 28956823 G T DSG4 5'Flank 0.48 TCGA-91-8499-01 18 44470569 44470579 TCAAGGACATC - PIAS2 Frame_Shift_Del p.D155Cfs*31 0.45 TCGA-91-8499-01 18 56409233 56409233 G A MALT1 Nonsense_Mutation p.W580* 0.14 TCGA-91-8499-01 18 732913 732913 C A YES1 Silent p.R448R 0.14 TCGA-91-8499-01 18 77475297 77475297 A T CTDP1 Missense_Mutation p.N613Y 0.62 deleterious(0.01) benign(0.396) TCGA-91-8499-01 19 12383937 12383937 G A ZNF44 Missense_Mutation p.S426L 0.87 tolerated(0.05) probably_damaging(0.992) TCGA-91-8499-01 19 1461077 1461077 C T APC2 Silent p.D521D 0.83 TCGA-91-8499-01 19 15061105 15061105 C G SLC1A6 Missense_Mutation p.E533Q 0.77 deleterious(0.04) probably_damaging(0.968) TCGA-91-8499-01 19 17716883 17716883 C A UNC13A Missense_Mutation p.G1698C 0.88 deleterious_low_confidence(0.01) benign(0.374) TCGA-91-8499-01 19 18507178 18507178 C T LRRC25 Missense_Mutation p.R199Q 0.87 tolerated(0.96) benign(0) TCGA-91-8499-01 19 19779725 19779725 C G ZNF101 5'UTR 0.54 TCGA-91-8499-01 19 31039818 31039818 G T ZNF536 Missense_Mutation p.G1098C 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.528) TCGA-91-8499-01 19 35175277 35175277 C T ZNF302 Missense_Mutation p.S112F 0.47 tolerated(0.89) benign(0.003) TCGA-91-8499-01 19 36244975 36244975 C T LIN37 Missense_Mutation p.P168S 0.49 deleterious(0.04) benign(0.023) TCGA-91-8499-01 19 37643369 37643369 G A ZNF585A Missense_Mutation p.R423W 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-91-8499-01 19 38964325 38964325 G C RYR1 Silent p.G1358G 0.44 TCGA-91-8499-01 19 40148588 40148588 C T LGALS16 Silent p.I27I 0.68 TCGA-91-8499-01 19 42460949 42460949 C A RABAC1 3'UTR 0.71 TCGA-91-8499-01 19 47151531 47151531 G A DACT3 3'UTR 0.58 TCGA-91-8499-01 19 47240082 47240082 T C STRN4 Silent p.R179R 0.38 TCGA-91-8499-01 19 49894164 49894164 G A CCDC155 Silent p.V8V 0.79 TCGA-91-8499-01 19 51480661 51480661 A G KLK7 3'UTR 0.85 TCGA-91-8499-01 19 51920356 51920356 C T SIGLEC10 Missense_Mutation p.G134E 0.64 tolerated(0.99) benign(0.021) TCGA-91-8499-01 19 54946839 54946839 C T TTYH1 Nonsense_Mutation p.R415* 0.43 TCGA-91-8499-01 19 58018249 58018249 C T ZNF773 Silent p.L262L 0.76 TCGA-91-8499-01 19 58563904 58563904 C A ZSCAN1 Missense_Mutation p.P171H 0.76 tolerated(0.12) possibly_damaging(0.839) TCGA-91-8499-01 19 643539 643539 C T FGF22 Missense_Mutation p.R150W 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-91-8499-01 19 681421 681421 G T FSTL3 Silent p.A198A 0.41 TCGA-91-8499-01 1 110134755 110134755 A T GNAI3 Missense_Mutation p.H322L 0.49 deleterious(0) probably_damaging(0.971) TCGA-91-8499-01 1 110716699 110716699 C T SLC6A17 Silent p.V183V 0.44 TCGA-91-8499-01 1 112525079 112525079 C T KCND3 Silent p.V90V 0.46 TCGA-91-8499-01 1 114128103 114128103 A C MAGI3 Silent p.A216A 0.41 TCGA-91-8499-01 1 114680218 114680218 G T SYT6 Missense_Mutation p.R239S 0.39 deleterious(0.04) benign(0.418) TCGA-91-8499-01 1 120539827 120539827 C T NOTCH2 Missense_Mutation p.D182N 0.54 deleterious(0.02) benign(0.174) TCGA-91-8499-01 1 145326037 145326037 C G NBPF10 Missense_Mutation p.L1304V 0.20 probably_damaging(0.983) TCGA-91-8499-01 1 151110864 151110864 C A SEMA6C Nonsense_Mutation p.E159* 0.57 TCGA-91-8499-01 1 151110865 151110865 C A SEMA6C Missense_Mutation p.Q158H 0.57 tolerated(0.15) benign(0.387) TCGA-91-8499-01 1 153945712 153945725 AAGTCCAGGAGCTG - CREB3L4 Frame_Shift_Del p.K262Rfs*59 0.55 TCGA-91-8499-01 1 154131519 154131519 G A NUP210L 5'Flank 0.26 TCGA-91-8499-01 1 157739790 157739790 G A FCRL2 Missense_Mutation p.S154L 0.30 tolerated(0.22) benign(0.413) TCGA-91-8499-01 1 157740417 157740417 C G FCRL2 Missense_Mutation p.G31A 0.55 deleterious(0) probably_damaging(0.994) TCGA-91-8499-01 1 157805895 157805895 G T CD5L Silent p.R36R 0.24 TCGA-91-8499-01 1 160535420 160535420 C - CD84 Frame_Shift_Del p.W54* 0.22 TCGA-91-8499-01 1 161681057 161681057 C A FCRLA Missense_Mutation p.R121S 0.22 tolerated(0.11) probably_damaging(0.929) TCGA-91-8499-01 1 16580198 16580198 C G FBXO42 Missense_Mutation p.E266Q 0.70 tolerated(0.24) possibly_damaging(0.582) TCGA-91-8499-01 1 169801589 169801591 TCA - C1orf112 In_Frame_Del p.I495del 0.23 TCGA-91-8499-01 1 178885551 178885551 A G RALGPS2 3'UTR 0.15 TCGA-91-8499-01 1 179304745 179304745 C T SOAT1 Silent p.L94L 0.23 TCGA-91-8499-01 1 18149756 18149756 G A ACTL8 Missense_Mutation p.V85M 0.73 deleterious(0.05) benign(0.44) TCGA-91-8499-01 1 186946807 186946807 G A PLA2G4A Missense_Mutation p.G616E 0.29 tolerated(0.08) probably_damaging(0.992) TCGA-91-8499-01 1 190067355 190067355 T A BRINP3 Silent p.S698S 0.61 TCGA-91-8499-01 1 190067536 190067536 G C BRINP3 Missense_Mutation p.P638R 0.52 tolerated(0.5) benign(0.367) TCGA-91-8499-01 1 214557708 214557708 G C PTPN14 Missense_Mutation p.T497S 0.80 tolerated(0.75) benign(0.004) TCGA-91-8499-01 1 2321388 2321388 C T MORN1 Missense_Mutation p.E42K 0.35 deleterious(0) probably_damaging(0.943) TCGA-91-8499-01 1 236894571 236894571 C T ACTN2 Silent p.I218I 0.27 TCGA-91-8499-01 1 243289819 243289819 C A CEP170 Missense_Mutation p.D1563Y 0.62 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-91-8499-01 1 247978984 247978984 A G OR14A16 Silent p.S16S 0.54 TCGA-91-8499-01 1 248402644 248402644 G T OR2M4 Silent p.P138P 0.49 TCGA-91-8499-01 1 248402880 248402880 C A OR2M4 Missense_Mutation p.S217Y 0.44 deleterious(0) probably_damaging(1) TCGA-91-8499-01 1 26688623 26688623 G A ZNF683 Intron 0.75 TCGA-91-8499-01 1 27240369 27240369 G T NR0B2 Silent p.L21L 0.62 TCGA-91-8499-01 1 29647330 29647330 C T PTPRU Missense_Mutation p.S1284F 0.67 tolerated(0.44) possibly_damaging(0.903) TCGA-91-8499-01 1 33958841 33958841 A T ZSCAN20 Missense_Mutation p.E500V 0.77 deleterious(0) possibly_damaging(0.853) TCGA-91-8499-01 1 34164388 34164388 C G CSMD2 Missense_Mutation p.R1257P 0.66 deleterious(0) probably_damaging(0.997) TCGA-91-8499-01 1 62190770 62190770 C A TM2D1 Missense_Mutation p.G70V 0.68 deleterious_low_confidence(0.01) benign(0.226) TCGA-91-8499-01 1 62916040 62916040 G A USP1 Silent p.V582V 0.68 TCGA-91-8499-01 1 74507162 74507162 G T LRRIQ3 Missense_Mutation p.Q485K 0.32 deleterious(0.02) benign(0.1) TCGA-91-8499-01 1 93169023 93169023 T C EVI5 Missense_Mutation p.T209A 0.17 deleterious(0) probably_damaging(0.999) TCGA-91-8499-01 20 13550169 13550169 T C TASP1 Missense_Mutation p.N185D 0.43 tolerated(0.52) benign(0.001) TCGA-91-8499-01 20 31627165 31627165 T A BPIFB6 Missense_Mutation p.Y305N 0.36 deleterious(0) possibly_damaging(0.877) TCGA-91-8499-01 20 35288785 35288785 G A NDRG3 Silent p.V271V 0.17 TCGA-91-8499-01 20 36856570 36856570 G A KIAA1755 Silent p.V648V 0.50 TCGA-91-8499-01 20 45354523 45354523 C G SLC2A10 Missense_Mutation p.A283G 0.41 tolerated(0.12) benign(0.244) TCGA-91-8499-01 20 47870316 47870316 C A ZNFX1 Missense_Mutation p.V998L 0.41 tolerated(0.21) benign(0.009) TCGA-91-8499-01 20 47870317 47870317 C A ZNFX1 Missense_Mutation p.K997N 0.41 tolerated(0.16) benign(0.309) TCGA-91-8499-01 20 52193576 52193576 A T ZNF217 Missense_Mutation p.L576H 0.50 tolerated(0.56) benign(0.03) TCGA-91-8499-01 20 54824808 54824808 C A MC3R Missense_Mutation p.S303R 0.48 deleterious(0) probably_damaging(0.998) TCGA-91-8499-01 21 31802670 31802670 C A KRTAP13-4 Missense_Mutation p.P26H 0.55 deleterious(0.03) possibly_damaging(0.732) TCGA-91-8499-01 21 32185275 32185275 G - KRTAP8-1 3'UTR 0.36 TCGA-91-8499-01 21 32185472 32185472 G A KRTAP8-1 Silent p.L23L 0.26 TCGA-91-8499-01 21 41416172 41416172 C T DSCAM Missense_Mutation p.G1739E 0.26 deleterious(0.01) possibly_damaging(0.552) TCGA-91-8499-01 21 41648030 41648030 C - DSCAM Frame_Shift_Del p.V784Lfs*6 0.28 TCGA-91-8499-01 21 42811706 42811706 G T MX1 Silent p.L174L 0.23 TCGA-91-8499-01 22 22730789 22730789 C A IGLV5-45 Missense_Mutation p.A95D 0.33 deleterious(0.01) benign(0.285) TCGA-91-8499-01 22 25115470 25115470 C T PIWIL3 Missense_Mutation p.R873H 0.34 tolerated(0.46) benign(0.002) TCGA-91-8499-01 22 32217522 32217522 G C DEPDC5 Missense_Mutation p.Q635H 0.34 tolerated(0.05) probably_damaging(0.997) TCGA-91-8499-01 22 41573426 41573426 A C EP300 Missense_Mutation p.Q1904P 0.05 possibly_damaging(0.84) TCGA-91-8499-01 2 111921786 111921786 G T BCL2L11 Missense_Mutation p.R192L 0.24 deleterious(0) probably_damaging(0.977) TCGA-91-8499-01 2 118716044 118716044 G A CCDC93 Missense_Mutation p.S301L 0.49 tolerated(0.08) benign(0.001) TCGA-91-8499-01 2 120197694 120197694 C T SCTR Silent p.%3D 0.25 TCGA-91-8499-01 2 125660522 125660522 C A CNTNAP5 Missense_Mutation p.S1166Y 0.58 deleterious(0) probably_damaging(0.953) TCGA-91-8499-01 2 128050384 128050384 T A ERCC3 Silent p.P91P 0.57 TCGA-91-8499-01 2 136630275 136630275 C T MCM6 Silent p.E82E 0.49 TCGA-91-8499-01 2 145157596 145157596 G C ZEB2 Silent p.G386G 0.49 TCGA-91-8499-01 2 152322188 152322188 G A RIF1 Missense_Mutation p.D2052N 0.29 tolerated_low_confidence(0.31) benign(0.048) TCGA-91-8499-01 2 152989769 152989769 C G STAM2 Missense_Mutation p.K296N 0.21 deleterious(0) probably_damaging(0.986) TCGA-91-8499-01 2 153525752 153525752 C T PRPF40A Missense_Mutation p.E555K 0.55 deleterious(0) possibly_damaging(0.621) TCGA-91-8499-01 2 1546377 1546377 G T TPO 3'UTR 0.27 TCGA-91-8499-01 2 168105069 168105069 T C XIRP2 Silent p.S2389S 0.27 TCGA-91-8499-01 2 179417703 179417703 G C TTN Missense_Mutation p.A29975G 0.18 TCGA-91-8499-01 2 179417704 179417704 C T TTN Missense_Mutation p.A29975T 0.18 TCGA-91-8499-01 2 179437770 179437770 G T TTN Silent p.A24363A 0.24 TCGA-91-8499-01 2 179438689 179438689 G T TTN Missense_Mutation p.P24057Q 0.55 TCGA-91-8499-01 2 179485225 179485225 C G TTN Silent p.V15341V 0.49 TCGA-91-8499-01 2 1795526 1795526 A G MYT1L 3'UTR 0.25 TCGA-91-8499-01 2 179582401 179582401 C T TTN Silent p.L8400L 0.54 TCGA-91-8499-01 2 179592853 179592853 G T TTN Silent p.G6566G 0.23 TCGA-91-8499-01 2 179616722 179616722 G T TTN Intron 0.45 TCGA-91-8499-01 2 185801339 185801339 G T ZNF804A Nonsense_Mutation p.E406* 0.58 TCGA-91-8499-01 2 1890335 1890335 A G MYT1L Missense_Mutation p.L894P 0.28 deleterious(0) probably_damaging(0.97) TCGA-91-8499-01 2 1921068 1921068 G C MYT1L Silent p.P507P 0.26 TCGA-91-8499-01 2 200245205 200245205 G T SATB2 Nonsense_Mutation p.S160* 0.57 TCGA-91-8499-01 2 20824502 20824502 T C HS1BP3 Silent p.S258S 0.53 TCGA-91-8499-01 2 220012436 220012436 G T NHEJ1 Missense_Mutation p.H158N 0.46 tolerated(0.34) benign(0.022) TCGA-91-8499-01 2 224760257 224760257 C T WDFY1 Missense_Mutation p.G230E 0.49 deleterious(0) probably_damaging(0.988) TCGA-91-8499-01 2 227661749 227661749 G A IRS1 Missense_Mutation p.P569L 0.26 tolerated(0.07) benign(0.057) TCGA-91-8499-01 2 231988312 231988312 C T HTR2B Nonsense_Mutation p.W56* 0.29 TCGA-91-8499-01 2 232390053 232390053 C A NMUR1 Missense_Mutation p.D328Y 0.47 deleterious(0) possibly_damaging(0.815) TCGA-91-8499-01 2 239974707 239974707 G A HDAC4 3'UTR 0.31 TCGA-91-8499-01 2 25523021 25523021 C T DNMT3A Missense_Mutation p.R55H 0.56 deleterious_low_confidence(0) benign(0.375) TCGA-91-8499-01 2 5833051 5833051 G T SOX11 Missense_Mutation p.K66N 0.51 deleterious(0) probably_damaging(0.998) TCGA-91-8499-01 2 60996007 60996007 T A PAPOLG Missense_Mutation p.D140E 0.30 tolerated(1) benign(0.001) TCGA-91-8499-01 2 60996008 60996008 G T PAPOLG Missense_Mutation p.G141C 0.27 deleterious(0) probably_damaging(0.926) TCGA-91-8499-01 2 73868257 73868257 C G NAT8 Missense_Mutation p.D167H 0.47 deleterious(0.05) benign(0.072) TCGA-91-8499-01 2 77746278 77746278 G T LRRTM4 Missense_Mutation p.N239K 0.44 deleterious(0) probably_damaging(0.999) TCGA-91-8499-01 2 95541397 95541397 A C TEKT4 Missense_Mutation p.K334T 0.25 deleterious(0) probably_damaging(0.967) TCGA-91-8499-01 3 113380124 113380124 A C KIAA2018 Silent p.S135S 0.24 TCGA-91-8499-01 3 122156060 122156060 C G KPNA1 Missense_Mutation p.W360S 0.57 deleterious(0) probably_damaging(1) TCGA-91-8499-01 3 12978003 12978003 C T IQSEC1 Silent p.E185E 0.44 TCGA-91-8499-01 3 132196824 132196824 G T DNAJC13 Splice_Site p.X850_splice 0.66 TCGA-91-8499-01 3 148562543 148562543 C G CPB1 Missense_Mutation p.A256G 0.24 deleterious(0) probably_damaging(0.965) TCGA-91-8499-01 3 148586711 148586711 T C CPA3 Missense_Mutation p.W52R 0.29 deleterious(0) probably_damaging(1) TCGA-91-8499-01 3 164906357 164906357 G T SLITRK3 Silent p.P754P 0.55 TCGA-91-8499-01 3 165547439 165547439 C A BCHE Missense_Mutation p.W461C 0.50 deleterious(0) probably_damaging(1) TCGA-91-8499-01 3 167512521 167512521 C T SERPINI1 Missense_Mutation p.L264F 0.19 deleterious(0.02) probably_damaging(0.982) TCGA-91-8499-01 3 171431716 171431716 G A PLD1 Missense_Mutation p.T293M 0.16 tolerated(0.1) probably_damaging(1) TCGA-91-8499-01 3 179537674 179537674 G T PEX5L Missense_Mutation p.Q305K 0.26 tolerated(0.54) benign(0.366) TCGA-91-8499-01 3 185191022 185191022 A C MAP3K13 Missense_Mutation p.N635H 0.21 tolerated_low_confidence(0.65) benign(0.001) TCGA-91-8499-01 3 185638965 185638965 G T TRA2B Missense_Mutation p.R217S 0.60 tolerated(0.07) possibly_damaging(0.726) TCGA-91-8499-01 3 196846282 196846282 T C DLG1 Missense_Mutation p.R462G 0.15 deleterious(0) possibly_damaging(0.571) TCGA-91-8499-01 3 197680871 197680871 C T RPL35A Intron 0.18 TCGA-91-8499-01 3 20178507 20178507 A G KAT2B Missense_Mutation p.Y608C 0.46 deleterious(0) probably_damaging(0.997) TCGA-91-8499-01 3 38739333 38739333 A C SCN10A Missense_Mutation p.V1793G 0.44 deleterious(0) probably_damaging(0.965) TCGA-91-8499-01 3 403381 403381 G C CHL1 Splice_Site p.X436_splice 0.51 TCGA-91-8499-01 3 404928 404928 G A CHL1 Missense_Mutation p.E483K 0.57 tolerated(0.16) benign(0.341) TCGA-91-8499-01 3 404988 404988 G A CHL1 Missense_Mutation p.E503K 0.52 tolerated(0.07) possibly_damaging(0.682) TCGA-91-8499-01 3 405064 405064 G C CHL1 Missense_Mutation p.R528T 0.46 deleterious(0) probably_damaging(0.991) TCGA-91-8499-01 3 405137 405137 G T CHL1 Intron 0.39 TCGA-91-8499-01 3 4355245 4355245 G A SETMAR Missense_Mutation p.D274N 0.49 tolerated_low_confidence(0.07) benign(0.108) TCGA-91-8499-01 3 4712518 4712518 C T ITPR1 Silent p.S689S 0.36 TCGA-91-8499-01 3 48459693 48459693 C A PLXNB1 Missense_Mutation p.W1043C 0.30 deleterious(0) probably_damaging(0.998) TCGA-91-8499-01 3 49877731 49877731 C T TRAIP Missense_Mutation p.D261N 0.32 deleterious(0) probably_damaging(0.928) TCGA-91-8499-01 3 55922459 55922459 C T ERC2 Missense_Mutation p.R841Q 0.34 tolerated(0.18) possibly_damaging(0.687) TCGA-91-8499-01 3 9758762 9758762 T A CPNE9 Missense_Mutation p.V302E 0.54 deleterious(0) possibly_damaging(0.569) TCGA-91-8499-01 3 97806511 97806511 A T OR5AC2 Silent p.L165L 0.30 TCGA-91-8499-01 3 98110226 98110226 T A OR5K3 Nonsense_Mutation p.C239* 0.58 TCGA-91-8499-01 4 109931526 109931526 C A COL25A1 Missense_Mutation p.Q142H 0.39 tolerated(0.36) unknown(0) TCGA-91-8499-01 4 122071337 122071337 G C TNIP3 Missense_Mutation p.S254C 0.74 tolerated(0.17) possibly_damaging(0.855) TCGA-91-8499-01 4 13485749 13485749 T A RAB28 Missense_Mutation p.Q9L 0.22 tolerated(0.17) benign(0.001) TCGA-91-8499-01 4 155719986 155719986 G C RBM46 Missense_Mutation p.E224D 0.69 deleterious(0) probably_damaging(0.994) TCGA-91-8499-01 4 156763447 156763447 A G ASIC5 Silent p.F307F 0.65 TCGA-91-8499-01 4 162841682 162841682 G T FSTL5 Missense_Mutation p.R95S 0.62 tolerated(0.1) benign(0.072) TCGA-91-8499-01 4 170345826 170345826 G C NEK1 Missense_Mutation p.Q1034E 0.68 tolerated(0.39) benign(0.197) TCGA-91-8499-01 4 175416762 175416762 A T HPGD Silent p.V145V 0.73 TCGA-91-8499-01 4 185138995 185138995 C A ENPP6 5'UTR 0.83 TCGA-91-8499-01 4 25783980 25783980 C A SEL1L3 Missense_Mutation p.A781S 0.82 tolerated(0.2) benign(0.44) TCGA-91-8499-01 4 47765474 47765474 C T CORIN Missense_Mutation p.R180H 0.13 deleterious(0.01) probably_damaging(1) TCGA-91-8499-01 4 71201024 71201024 A G CABS1 Missense_Mutation p.T90A 0.28 tolerated(0.33) possibly_damaging(0.866) TCGA-91-8499-01 4 9943590 9943590 T C SLC2A9 Missense_Mutation p.D254G 0.23 deleterious(0) benign(0.3) TCGA-91-8499-01 5 101774432 101774432 C T SLCO6A1 Missense_Mutation p.A389T 0.71 tolerated(0.06) benign(0.331) TCGA-91-8499-01 5 13885233 13885233 T C DNAH5 Missense_Mutation p.M950V 0.80 benign(0) TCGA-91-8499-01 5 139915013 139915013 C G ANKHD1 Missense_Mutation p.S2306C 0.38 possibly_damaging(0.891) TCGA-91-8499-01 5 140165959 140165959 C T PCDHA1 Silent p.S28S 0.42 TCGA-91-8499-01 5 140625608 140625608 G T PCDHB15 Silent p.L154L 0.80 TCGA-91-8499-01 5 140763908 140763908 G T PCDHGA7 Missense_Mutation p.S481I 0.78 deleterious_low_confidence(0.01) benign(0.314) TCGA-91-8499-01 5 150948506 150948506 C A FAT2 5'Flank 0.78 TCGA-91-8499-01 5 153029957 153029957 C A GRIA1 Missense_Mutation p.N186K 0.34 tolerated(0.71) probably_damaging(0.911) TCGA-91-8499-01 5 16666852 16666852 C T MYO10 Silent p.K2042K 0.21 TCGA-91-8499-01 5 17354548 17354548 G C CTD-2139B15.2 RNA 0.13 TCGA-91-8499-01 5 176011847 176011847 G T CDHR2 Silent p.G855G 0.72 TCGA-91-8499-01 5 176722109 176722109 G A NSD1 Silent p.A2580A 0.27 TCGA-91-8499-01 5 23522773 23522773 C A PRDM9 Missense_Mutation p.P221T 0.16 deleterious(0) possibly_damaging(0.584) TCGA-91-8499-01 5 24509862 24509862 G T CDH10 Missense_Mutation p.P357T 0.21 deleterious(0.05) probably_damaging(0.987) TCGA-91-8499-01 5 31553081 31553081 G C C5orf22 3'UTR 0.75 TCGA-91-8499-01 5 36143449 36143449 C T LMBRD2 Translation_Start_Site p.M1? 0.24 deleterious(0) probably_damaging(0.914) TCGA-91-8499-01 5 40767653 40767653 G C PRKAA1 Missense_Mutation p.Q261E 0.31 tolerated(1) benign(0.005) TCGA-91-8499-01 5 43277385 43277385 C T NIM1K Silent p.S173S 0.12 TCGA-91-8499-01 5 43280487 43280487 G T NIM1K Nonsense_Mutation p.E323* 0.20 TCGA-91-8499-01 5 63257544 63257544 C A HTR1A Translation_Start_Site p.M1? 0.80 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-91-8499-01 5 64960403 64960403 T C TRAPPC13 Missense_Mutation p.C408R 0.90 deleterious(0.01) possibly_damaging(0.865) TCGA-91-8499-01 5 70672153 70672153 G C RP11-136K7.2 Intron 0.81 TCGA-91-8499-01 5 70672154 70672154 G T RP11-136K7.2 Intron 0.80 TCGA-91-8499-01 5 70945975 70945975 A G MCCC2 Missense_Mutation p.I485V 0.82 tolerated_low_confidence(1) benign(0.009) TCGA-91-8499-01 6 107100349 107100349 G T QRSL1 Silent p.L247L 0.24 TCGA-91-8499-01 6 110729606 110729606 G A DDO Missense_Mutation p.T99I 0.30 deleterious(0) probably_damaging(0.996) TCGA-91-8499-01 6 114379334 114379334 A T HS3ST5 Missense_Mutation p.I43N 0.43 tolerated_low_confidence(0.09) benign(0.174) TCGA-91-8499-01 6 116951693 116951711 GCATATGCCTTCTCCAATG - RSPH4A Frame_Shift_Del p.Y633Kfs*8 0.41 TCGA-91-8499-01 6 130497057 130497057 G C SAMD3 Missense_Mutation p.H251D 0.51 deleterious(0.01) probably_damaging(0.996) TCGA-91-8499-01 6 131277280 131277280 C T EPB41L2 Missense_Mutation p.E116K 0.26 tolerated(0.33) benign(0.033) TCGA-91-8499-01 6 132722338 132722338 G T MOXD1 Silent p.V76V 0.58 TCGA-91-8499-01 6 132859682 132859682 T A TAAR9 Missense_Mutation p.V85E 0.39 deleterious(0) probably_damaging(0.962) TCGA-91-8499-01 6 135254009 135254009 G C ALDH8A1 Missense_Mutation p.L252V 0.59 deleterious(0) probably_damaging(1) TCGA-91-8499-01 6 135776961 135776961 C G AHI1 Missense_Mutation p.E419Q 0.39 deleterious(0) benign(0.352) TCGA-91-8499-01 6 152728224 152728224 G T SYNE1 Nonsense_Mutation p.C2216* 0.23 TCGA-91-8499-01 6 160510170 160510170 A G IGF2R Missense_Mutation p.S2118G 0.48 tolerated(0.6) benign(0.016) TCGA-91-8499-01 6 165715453 165715453 G T C6orf118 Missense_Mutation p.P120T 0.42 deleterious(0) possibly_damaging(0.906) TCGA-91-8499-01 6 25652545 25652545 G C SCGN 5'UTR 0.49 TCGA-91-8499-01 6 25770505 25770505 C G SLC17A4 Missense_Mutation p.R170G 0.25 deleterious(0) probably_damaging(0.976) TCGA-91-8499-01 6 25799109 25799109 C A SLC17A1 Missense_Mutation p.M436I 0.57 tolerated(0.52) benign(0.01) TCGA-91-8499-01 6 30657966 30657967 - G NRM Frame_Shift_Ins p.L63Pfs*21 0.20 TCGA-91-8499-01 6 31867565 31867565 C G ZBTB12 3'UTR 0.50 TCGA-91-8499-01 6 31868680 31868680 C G ZBTB12 Missense_Mutation p.E135Q 0.53 tolerated(0.06) benign(0.403) TCGA-91-8499-01 6 32260851 32260851 C G C6orf10 Missense_Mutation p.K533N 0.55 deleterious(0.01) probably_damaging(0.991) TCGA-91-8499-01 6 32372721 32372721 A G BTNL2 Missense_Mutation p.V141A 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-91-8499-01 6 35056595 35056595 C T ANKS1A 3'UTR 0.23 TCGA-91-8499-01 6 4056594 4056594 G T PRPF4B Missense_Mutation p.G836W 0.28 deleterious(0) unknown(0) TCGA-91-8499-01 6 42854020 42854020 G T RPL7L1 Missense_Mutation p.D187Y 0.21 deleterious(0) probably_damaging(0.985) TCGA-91-8499-01 6 49573539 49573539 G C RHAG Missense_Mutation p.P406R 0.21 deleterious(0) possibly_damaging(0.587) TCGA-91-8499-01 6 55192370 55192370 C G GFRAL Missense_Mutation p.F6L 0.50 tolerated(0.33) benign(0.001) TCGA-91-8499-01 6 71665702 71665702 G T B3GAT2 Missense_Mutation p.T144K 0.40 deleterious(0.02) possibly_damaging(0.819) TCGA-91-8499-01 6 74063753 74063753 G T DPPA5 Missense_Mutation p.P39T 0.24 deleterious(0.03) benign(0.295) TCGA-91-8499-01 6 76751683 76751683 C A IMPG1 Silent p.T76T 0.24 TCGA-91-8499-01 6 83832673 83832673 G C DOPEY1 Missense_Mutation p.V438L 0.55 tolerated(0.22) benign(0.011) TCGA-91-8499-01 6 96651401 96651401 G C FUT9 Missense_Mutation p.A124P 0.35 tolerated(1) benign(0.002) TCGA-91-8499-01 7 100064673 100064673 C T TSC22D4 Missense_Mutation p.R366H 0.23 deleterious(0) probably_damaging(0.998) TCGA-91-8499-01 7 100675389 100675389 C T MUC17 Missense_Mutation p.S231L 0.28 benign(0.202) TCGA-91-8499-01 7 102953640 102953640 C T PMPCB 3'UTR 0.21 TCGA-91-8499-01 7 107613482 107613482 C T LAMB1 Missense_Mutation p.G506E 0.24 deleterious(0) probably_damaging(1) TCGA-91-8499-01 7 130562234 130562234 T C MIR29A RNA 0.60 TCGA-91-8499-01 7 135047737 135047737 G A CNOT4 Missense_Mutation p.S681F 0.29 deleterious_low_confidence(0.01) benign(0.192) TCGA-91-8499-01 7 140159540 140159540 C G MKRN1 Missense_Mutation p.E171Q 0.51 deleterious(0) probably_damaging(0.911) TCGA-91-8499-01 7 143701218 143701218 G A OR6B1 Silent p.V43V 0.21 TCGA-91-8499-01 7 150647133 150647133 G A KCNH2 Intron 0.69 TCGA-91-8499-01 7 31126053 31126053 T G ADCYAP1R1 Missense_Mutation p.F242C 0.67 deleterious(0.02) probably_damaging(0.998) TCGA-91-8499-01 7 53103459 53103459 C A POM121L12 Missense_Mutation p.P32H 0.82 tolerated(0.07) benign(0.066) TCGA-91-8499-01 7 56147389 56147389 C T SUMF2 Missense_Mutation p.S301L 0.43 deleterious_low_confidence(0) benign(0.002) TCGA-91-8499-01 7 73513500 73513500 C T LIMK1 Silent p.V180V 0.54 TCGA-91-8499-01 8 101054145 101054145 C A RGS22 Splice_Site p.X608_splice 0.61 TCGA-91-8499-01 8 102731836 102731836 G T NCALD Missense_Mutation p.L8M 0.26 deleterious(0.01) probably_damaging(0.925) TCGA-91-8499-01 8 10470749 10470749 G T RP1L1 Missense_Mutation p.P287T 0.65 benign(0.351) TCGA-91-8499-01 8 10480579 10480579 G T RP1L1 Silent p.R45R 0.57 TCGA-91-8499-01 8 105405087 105405087 C G DPYS Silent p.T456T 0.32 TCGA-91-8499-01 8 110523119 110523119 C A PKHD1L1 Missense_Mutation p.P3837T 0.30 deleterious(0) probably_damaging(1) TCGA-91-8499-01 8 113348966 113348966 G A CSMD3 Missense_Mutation p.L2312F 0.26 deleterious(0.03) benign(0.392) TCGA-91-8499-01 8 131812721 131812721 C T ADCY8 Missense_Mutation p.G1004E 0.18 deleterious(0.04) probably_damaging(1) TCGA-91-8499-01 8 143561104 143561104 G C BAI1 Missense_Mutation p.E593Q 0.24 tolerated(0.09) possibly_damaging(0.728) TCGA-91-8499-01 8 143956464 143956464 C A CYP11B1 Missense_Mutation p.R436M 0.56 tolerated(0.1) benign(0.208) TCGA-91-8499-01 8 144885650 144885650 G A SCRIB Missense_Mutation p.T1169M 0.16 probably_damaging(1) TCGA-91-8499-01 8 18513162 18513162 C G PSD3 Missense_Mutation p.E736Q 0.63 tolerated(0.3) possibly_damaging(0.623) TCGA-91-8499-01 8 38146989 38146989 C T WHSC1L1 Silent p.L1051L 0.08 TCGA-91-8499-01 8 38187102 38187102 C T WHSC1L1 Missense_Mutation p.E459K 0.08 tolerated(0.32) benign(0.003) TCGA-91-8499-01 8 39624673 39624673 A G ADAM2 Missense_Mutation p.L437P 0.85 deleterious(0.03) possibly_damaging(0.53) TCGA-91-8499-01 8 40625245 40625245 C A ZMAT4 Missense_Mutation p.R36L 0.14 deleterious(0) probably_damaging(0.999) TCGA-91-8499-01 8 51569481 51569481 G A SNTG1 Missense_Mutation p.G288S 0.17 deleterious(0) probably_damaging(1) TCGA-91-8499-01 8 73942611 73942611 G T TERF1 Missense_Mutation p.G310C 0.62 deleterious(0.01) possibly_damaging(0.711) TCGA-91-8499-01 8 75156820 75156820 G C JPH1 Missense_Mutation p.P617A 0.55 tolerated(0.2) possibly_damaging(0.687) TCGA-91-8499-01 8 77765002 77765002 G T ZFHX4 Nonsense_Mutation p.G1949* 0.12 TCGA-91-8499-01 8 80678678 80678678 C G HEY1 Intron 0.55 TCGA-91-8499-01 8 8654982 8654982 G C MFHAS1 Silent p.P1006P 0.50 TCGA-91-8499-01 8 89053608 89053608 G A MMP16 3'UTR 0.70 TCGA-91-8499-01 8 95160974 95160974 A T CDH17 Missense_Mutation p.V642E 0.68 tolerated(0.87) benign(0.038) TCGA-91-8499-01 8 97157355 97157355 C G GDF6 Missense_Mutation p.R268S 0.60 tolerated(0.85) benign(0.026) TCGA-91-8499-01 9 137658864 137658864 G C COL5A1 Missense_Mutation p.G718R 0.80 unknown(0) TCGA-91-8499-01 9 18777678 18777678 G T ADAMTSL1 Missense_Mutation p.G1151W 0.57 tolerated(0.18) possibly_damaging(0.523) TCGA-91-8499-01 9 34242054 34242054 C G UBAP1 Missense_Mutation p.S408C 0.82 tolerated(0.08) probably_damaging(0.927) TCGA-91-8499-01 9 7049119 7049119 G T KDM4C Silent p.A781A 0.63 TCGA-91-8499-01 9 71006587 71006587 G T PGM5 Nonsense_Mutation p.E279* 0.81 TCGA-91-8499-01 9 86909178 86909178 C T SLC28A3 Missense_Mutation p.V292M 0.17 deleterious(0) possibly_damaging(0.875) TCGA-91-8499-01 9 98775119 98775119 G TC ERCC6L2 Frame_Shift_Ins p.L402Pfs*12 0.45 TCGA-91-8499-01 X 106146534 106146534 C T RIPPLY1 5'UTR 0.81 TCGA-91-8499-01 X 109924728 109924728 C T CHRDL1 Missense_Mutation p.V380I 0.81 tolerated(0.58) benign(0.064) TCGA-91-8499-01 X 131513568 131513568 T C MBNL3 3'UTR 0.73 TCGA-91-8499-01 X 134033372 134033372 T A MOSPD1 Missense_Mutation p.Q31L 0.75 deleterious(0.01) probably_damaging(0.99) TCGA-91-8499-01 X 135428953 135428953 G A GPR112 Missense_Mutation p.E1030K 0.76 tolerated(1) benign(0) TCGA-91-8499-01 X 138643872 138643872 A T F9 Missense_Mutation p.N343I 0.78 deleterious(0) probably_damaging(0.965) TCGA-91-8499-01 X 154490503 154490503 C T RAB39B Missense_Mutation p.R76H 0.40 deleterious(0) probably_damaging(0.993) TCGA-91-8499-01 X 27997006 27997006 G C DCAF8L1 3'UTR 0.35 TCGA-91-8499-01 X 30237091 30237091 G T MAGEB2 Missense_Mutation p.V132F 0.13 deleterious(0.02) benign(0.063) TCGA-91-8499-01 X 38530629 38530629 G T TSPAN7 Splice_Site p.X91_splice 0.59 TCGA-91-8499-01 X 62974209 62974209 C A ARHGEF9 5'UTR 0.11 TCGA-91-8499-01 X 62974210 62974210 C T ARHGEF9 5'UTR 0.11 TCGA-91-8499-01 X 70387440 70387440 G T NLGN3 Missense_Mutation p.G498V 0.21 deleterious(0.01) probably_damaging(1) TCGA-91-8499-01 X 70461189 70461189 C T ZMYM3 Missense_Mutation p.G1270S 0.62 tolerated(0.75) benign(0.016) TCGA-91-8499-01 X 74291423 74291423 C A ABCB7 Missense_Mutation p.M377I 0.12 deleterious(0.05) benign(0.205) TCGA-91-8499-01 X 75397471 75397471 G T PBDC1 Missense_Mutation p.A144S 0.15 deleterious(0) probably_damaging(0.997) TCGA-91-8499-01 X 82763370 82763370 G T POU3F4 Missense_Mutation p.S13I 0.12 tolerated_low_confidence(0.07) benign(0.183) TCGA-91-A4BC-01 10 101591889 101591889 G C ABCC2 Splice_Site p.X1086_splice 0.11 TCGA-91-A4BC-01 10 103607143 103607143 T C C10orf76 3'UTR 0.25 TCGA-91-A4BC-01 10 105815603 105815603 T A COL17A1 Missense_Mutation p.S542C 0.22 unknown(0) TCGA-91-A4BC-01 10 105971861 105971861 A G WDR96 Silent p.V213V 0.18 TCGA-91-A4BC-01 10 115422490 115422490 T C NRAP Missense_Mutation p.Y68C 0.10 deleterious(0.01) benign(0.016) TCGA-91-A4BC-01 10 124909103 124909103 G A HMX2 Missense_Mutation p.G96R 0.13 tolerated(0.29) benign(0.302) TCGA-91-A4BC-01 10 131640512 131640512 T A EBF3 Missense_Mutation p.S405C 0.18 deleterious_low_confidence(0) benign(0.324) TCGA-91-A4BC-01 10 28260203 28260203 G A ARMC4 Nonsense_Mutation p.Q326* 0.10 TCGA-91-A4BC-01 10 32560653 32560653 C T EPC1 Missense_Mutation p.R756Q 0.08 tolerated(0.38) probably_damaging(0.979) TCGA-91-A4BC-01 10 38241647 38241647 C G ZNF25 Missense_Mutation p.C260S 0.13 deleterious(0) probably_damaging(1) TCGA-91-A4BC-01 10 38654451 38654451 C A HSD17B7P2 RNA 0.09 TCGA-91-A4BC-01 10 45959700 45959700 G A MARCH8 Nonsense_Mutation p.Q77* 0.14 TCGA-91-A4BC-01 10 50953543 50953543 C A OGDHL Splice_Site p.X493_splice 0.08 TCGA-91-A4BC-01 10 51889183 51889183 G T FAM21A Missense_Mutation p.R1031L 0.10 deleterious(0) probably_damaging(0.999) TCGA-91-A4BC-01 10 54048595 54048595 A T PRKG1 Nonsense_Mutation p.K607* 0.12 TCGA-91-A4BC-01 10 55587186 55587186 G T PCDH15 Missense_Mutation p.A1445E 0.13 tolerated_low_confidence(0.1) benign(0.246) TCGA-91-A4BC-01 10 72195366 72195366 G T AC022532.1 Missense_Mutation p.G105C 0.26 probably_damaging(0.985) TCGA-91-A4BC-01 10 7618715 7618715 G T ITIH5 Missense_Mutation p.P560H 0.14 deleterious(0.05) possibly_damaging(0.885) TCGA-91-A4BC-01 10 88768893 88768893 G T RP11-96C23.10 3'Flank 0.07 TCGA-91-A4BC-01 10 91065912 91065912 A C IFIT2 Missense_Mutation p.N67H 0.16 tolerated(0.14) benign(0.075) TCGA-91-A4BC-01 10 99969601 99969601 G T R3HCC1L Missense_Mutation p.W577L 0.17 deleterious(0) probably_damaging(1) TCGA-91-A4BC-01 11 102985922 102985922 C A DYNC2H1 Missense_Mutation p.S173R 0.25 benign(0.017) TCGA-91-A4BC-01 11 105758265 105758265 T C GRIA4 Silent p.H231H 0.20 TCGA-91-A4BC-01 11 105967582 105967582 A C AASDHPPT Missense_Mutation p.D293A 0.28 deleterious(0.05) benign(0.041) TCGA-91-A4BC-01 11 106681119 106681119 T A GUCY1A2 Missense_Mutation p.D431V 0.41 deleterious(0) probably_damaging(0.962) TCGA-91-A4BC-01 11 108712055 108712055 G T DDX10 Missense_Mutation p.W700L 0.43 tolerated(0.4) probably_damaging(0.999) TCGA-91-A4BC-01 11 114112944 114112944 C G ZBTB16 Missense_Mutation p.S503R 0.27 tolerated(0.49) benign(0.029) TCGA-91-A4BC-01 11 117094011 117094011 C T PCSK7 Silent p.E356E 0.11 TCGA-91-A4BC-01 11 118011971 118011971 G T SCN4B Missense_Mutation p.L182M 0.34 deleterious(0.01) possibly_damaging(0.779) TCGA-91-A4BC-01 11 118770638 118770638 C A BCL9L Missense_Mutation p.G1132C 0.40 probably_damaging(1) TCGA-91-A4BC-01 11 124120635 124120635 C A OR8G1 Missense_Mutation p.F71L 0.17 tolerated_low_confidence(1) benign(0.005) TCGA-91-A4BC-01 11 129754656 129754656 C A NFRKB Silent p.T267T 0.29 TCGA-91-A4BC-01 11 129827702 129827702 T A PRDM10 Missense_Mutation p.Y58F 0.37 tolerated_low_confidence(0.19) benign(0.024) TCGA-91-A4BC-01 11 21250928 21250928 T C NELL1 Missense_Mutation p.C493R 0.31 deleterious(0) probably_damaging(1) TCGA-91-A4BC-01 11 2432720 2432720 C T TRPM5 Missense_Mutation p.V882M 0.14 deleterious(0.02) possibly_damaging(0.543) TCGA-91-A4BC-01 11 35198175 35198175 C T CD44 Missense_Mutation p.R41C 0.16 deleterious(0) probably_damaging(1) TCGA-91-A4BC-01 11 35454407 35454407 G A PAMR1 Missense_Mutation p.P571S 0.17 deleterious(0) probably_damaging(0.999) TCGA-91-A4BC-01 11 36614262 36614262 C A RAG2 Missense_Mutation p.R486I 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-91-A4BC-01 11 55541093 55541093 C A OR5D13 Silent p.I60I 0.25 TCGA-91-A4BC-01 11 55681694 55681694 C A OR5W2 Missense_Mutation p.R122L 0.37 deleterious(0) possibly_damaging(0.594) TCGA-91-A4BC-01 11 60183019 60183019 C T MS4A14 Missense_Mutation p.S226L 0.28 deleterious(0.01) benign(0.297) TCGA-91-A4BC-01 11 60704539 60704539 C T TMEM132A 3'UTR 0.50 TCGA-91-A4BC-01 11 61665821 61665821 A T RAB3IL1 Missense_Mutation p.F360I 0.24 deleterious(0) possibly_damaging(0.821) TCGA-91-A4BC-01 11 62553845 62553845 C T TAF6L Silent p.V358V 0.11 TCGA-91-A4BC-01 11 62760970 62760970 C A SLC22A8 Silent p.G485G 0.31 TCGA-91-A4BC-01 11 65793831 65793831 G T CATSPER1 Missense_Mutation p.P7H 0.26 tolerated(0.08) possibly_damaging(0.712) TCGA-91-A4BC-01 11 74617299 74617299 C T XRRA1 Missense_Mutation p.D322N 0.44 deleterious(0) probably_damaging(1) TCGA-91-A4BC-01 11 76893142 76893142 A T MYO7A Missense_Mutation p.Y1017F 0.10 tolerated(0.07) benign(0.439) TCGA-91-A4BC-01 11 92087607 92087607 G T FAT3 Missense_Mutation p.D777Y 0.08 probably_damaging(0.951) TCGA-91-A4BC-01 12 102811765 102811765 G T IGF1 Missense_Mutation p.T140N 0.16 tolerated(0.2) benign(0.015) TCGA-91-A4BC-01 12 105591632 105591632 C A APPL2 Missense_Mutation p.L327F 0.20 deleterious(0.05) possibly_damaging(0.785) TCGA-91-A4BC-01 12 108589719 108589719 C G WSCD2 Missense_Mutation p.S37C 0.18 deleterious(0.03) possibly_damaging(0.705) TCGA-91-A4BC-01 12 108686249 108686249 C A CMKLR1 Missense_Mutation p.W164L 0.19 deleterious(0) probably_damaging(1) TCGA-91-A4BC-01 12 111351120 111351120 G T MYL2 Missense_Mutation p.P95T 0.18 deleterious(0.02) possibly_damaging(0.65) TCGA-91-A4BC-01 12 111758183 111758183 C G CUX2 Silent p.A790A 0.12 TCGA-91-A4BC-01 12 113515241 113515241 C A DTX1 Missense_Mutation p.P91H 0.31 deleterious(0) benign(0.001) TCGA-91-A4BC-01 12 121687629 121687629 G A CAMKK2 Silent p.D428D 0.07 TCGA-91-A4BC-01 12 122611883 122611883 C A MLXIP Missense_Mutation p.A165D 0.33 deleterious(0) probably_damaging(0.999) TCGA-91-A4BC-01 12 12279761 12279761 A G LRP6 Silent p.F1392F 0.18 TCGA-91-A4BC-01 12 12291357 12291357 A T LRP6 Missense_Mutation p.I1170N 0.13 deleterious(0) possibly_damaging(0.702) TCGA-91-A4BC-01 12 14019048 14019048 G T GRIN2B Missense_Mutation p.P32H 0.22 tolerated(0.15) benign(0) TCGA-91-A4BC-01 12 29659854 29659854 C G TMTC1 Silent p.L858L 0.19 TCGA-91-A4BC-01 12 3659225 3659225 G T PRMT8 Missense_Mutation p.A129S 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-91-A4BC-01 12 40012755 40012755 C A ABCD2 Silent p.V221V 0.24 TCGA-91-A4BC-01 12 44537359 44537359 C T TMEM117 Nonsense_Mutation p.R148* 0.08 TCGA-91-A4BC-01 12 50189998 50189998 C A NCKAP5L Missense_Mutation p.G549C 0.23 deleterious(0.01) probably_damaging(0.989) TCGA-91-A4BC-01 12 52845359 52845359 C T KRT6B Silent p.K168K 0.14 TCGA-91-A4BC-01 12 53670894 53670894 C T ESPL1 Silent p.A656A 0.21 TCGA-91-A4BC-01 12 56552389 56552389 G T MYL6 Intron 0.26 TCGA-91-A4BC-01 12 68052496 68052500 TCACG - DYRK2 3'UTR 0.17 TCGA-91-A4BC-01 12 70938335 70938335 A T PTPRB Splice_Site p.X1832_splice 0.19 TCGA-91-A4BC-01 12 8687304 8687304 C A CLEC4E Missense_Mutation p.C197F 0.14 deleterious(0) probably_damaging(1) TCGA-91-A4BC-01 12 95479678 95479678 C T FGD6 Missense_Mutation p.A1329T 0.11 deleterious(0.01) probably_damaging(0.978) TCGA-91-A4BC-01 12 98849593 98849593 G C SLC9A7P1 RNA 0.12 TCGA-91-A4BC-01 12 99640640 99640640 C A ANKS1B Missense_Mutation p.D587Y 0.22 deleterious(0.01) benign(0.003) TCGA-91-A4BC-01 13 110857877 110857877 G T COL4A1 Silent p.P289P 0.28 TCGA-91-A4BC-01 13 114526417 114526417 G T GAS6 Silent p.P528P 0.35 TCGA-91-A4BC-01 13 25264487 25264487 C A ATP12A Silent p.V186V 0.17 TCGA-91-A4BC-01 13 26535801 26535801 C G ATP8A2 Missense_Mutation p.A1091G 0.12 tolerated(0.06) benign(0.355) TCGA-91-A4BC-01 13 27333464 27333464 G T GPR12 Silent p.T167T 0.25 TCGA-91-A4BC-01 13 27847684 27847684 G T RASL11A 3'UTR 0.31 TCGA-91-A4BC-01 13 30784488 30784488 C A KATNAL1 Missense_Mutation p.E413D 0.21 tolerated(0.44) benign(0.009) TCGA-91-A4BC-01 13 48655783 48655783 G A MED4 Missense_Mutation p.P169L 0.28 tolerated(0.09) probably_damaging(0.999) TCGA-91-A4BC-01 13 52234781 52234781 G C WDFY2 Missense_Mutation p.V63L 0.19 deleterious(0.02) benign(0.004) TCGA-91-A4BC-01 13 77662986 77662986 C A MYCBP2 Missense_Mutation p.C3531F 0.18 probably_damaging(0.988) TCGA-91-A4BC-01 13 77738625 77738625 C A MYCBP2 Missense_Mutation p.A2133S 0.29 possibly_damaging(0.758) TCGA-91-A4BC-01 14 105410607 105410607 G A AHNAK2 Silent p.P3727P 0.07 TCGA-91-A4BC-01 14 106845536 106845536 G A IGHV3-35 Silent p.F46F 0.08 TCGA-91-A4BC-01 14 22314846 22314846 C A TRAV8-2 5'UTR 0.32 TCGA-91-A4BC-01 14 23873947 23873947 G T MYH6 Silent p.G205G 0.06 TCGA-91-A4BC-01 14 38679680 38679680 C A SSTR1 Silent p.A362A 0.17 TCGA-91-A4BC-01 14 45605381 45605381 G C FANCM Missense_Mutation p.Q49H 0.06 tolerated(0.11) benign(0.289) TCGA-91-A4BC-01 14 88454541 88454541 C A GALC Missense_Mutation p.G92V 0.15 deleterious(0) probably_damaging(0.995) TCGA-91-A4BC-01 14 88651967 88651967 T C KCNK10 Missense_Mutation p.Q515R 0.17 tolerated_low_confidence(0.14) benign(0.018) TCGA-91-A4BC-01 14 91755660 91755660 G A CCDC88C Silent p.A1410A 0.10 TCGA-91-A4BC-01 14 91780046 91780046 T C CCDC88C Missense_Mutation p.E705G 0.14 deleterious(0) probably_damaging(0.999) TCGA-91-A4BC-01 14 94404047 94404047 C A ASB2 Missense_Mutation p.A590S 0.19 tolerated(0.3) benign(0.316) TCGA-91-A4BC-01 14 96917827 96917827 A G AK7 Missense_Mutation p.I340V 0.27 tolerated(0.16) benign(0.13) TCGA-91-A4BC-01 15 101569296 101569296 G T LRRK1 Missense_Mutation p.R941L 0.27 deleterious(0.03) possibly_damaging(0.497) TCGA-91-A4BC-01 15 20170015 20170015 C A IGHV1OR15-9 Missense_Mutation p.R86I 0.11 deleterious(0) probably_damaging(0.991) TCGA-91-A4BC-01 15 20649629 20649629 C A HERC2P3 RNA 0.06 TCGA-91-A4BC-01 15 33916007 33916007 G C RYR3 Splice_Site p.X786_splice 0.07 TCGA-91-A4BC-01 15 40630769 40630769 C T C15orf52 Silent p.T204T 0.05 TCGA-91-A4BC-01 15 43712754 43712754 C A TP53BP1 Missense_Mutation p.G1477V 0.14 deleterious(0.03) probably_damaging(0.924) TCGA-91-A4BC-01 15 48500070 48500070 G T SLC12A1 Missense_Mutation p.D52Y 0.18 deleterious(0.01) possibly_damaging(0.466) TCGA-91-A4BC-01 15 48766501 48766501 G C FBN1 Nonsense_Mutation p.Y1387* 0.17 TCGA-91-A4BC-01 15 49254840 49254840 G T SHC4 Missense_Mutation p.P125T 0.16 tolerated(0.28) benign(0.001) TCGA-91-A4BC-01 15 57931725 57931725 C G GCOM1 Silent p.V367V 0.29 TCGA-91-A4BC-01 15 65041234 65041234 G T RBPMS2 Missense_Mutation p.P128H 0.28 deleterious(0) probably_damaging(0.923) TCGA-91-A4BC-01 15 65916469 65916469 A T SLC24A1 Silent p.T17T 0.18 TCGA-91-A4BC-01 15 66779609 66779609 G T MAP2K1 Missense_Mutation p.L313F 0.05 deleterious(0) probably_damaging(0.995) TCGA-91-A4BC-01 15 72500960 72500960 G A PKM Splice_Site p.X279_splice 0.11 TCGA-91-A4BC-01 15 73615910 73615910 G T HCN4 Missense_Mutation p.P842T 0.16 deleterious_low_confidence(0) unknown(0) TCGA-91-A4BC-01 15 74043344 74043344 A T C15orf59 Missense_Mutation p.L43H 0.20 deleterious(0) probably_damaging(0.977) TCGA-91-A4BC-01 15 77407565 77407565 C A PEAK1 Missense_Mutation p.G1392C 0.21 deleterious(0) probably_damaging(1) TCGA-91-A4BC-01 15 91292763 91292763 T C BLM Missense_Mutation p.F89L 0.09 tolerated(0.24) benign(0.006) TCGA-91-A4BC-01 15 99670914 99670914 G A SYNM Silent p.L782L 0.12 TCGA-91-A4BC-01 16 1035322 1035322 C A SOX8 Missense_Mutation p.P426Q 0.27 deleterious(0) benign(0.043) TCGA-91-A4BC-01 16 10841060 10841060 G T NUBP1 Missense_Mutation p.G62V 0.20 deleterious(0) probably_damaging(0.946) TCGA-91-A4BC-01 16 15719405 15719405 T G KIAA0430 Missense_Mutation p.K593Q 0.04 tolerated(0.11) possibly_damaging(0.697) TCGA-91-A4BC-01 16 2239498 2239498 C A CASKIN1 Silent p.A104A 0.16 TCGA-91-A4BC-01 16 2812532 2812532 G T SRRM2 Missense_Mutation p.R668L 0.05 unknown(0) TCGA-91-A4BC-01 16 31384622 31384622 G T ITGAX Missense_Mutation p.V807L 0.15 tolerated(0.11) benign(0.033) TCGA-91-A4BC-01 16 31388223 31388223 G T ITGAX Missense_Mutation p.R871L 0.07 tolerated(0.13) possibly_damaging(0.718) TCGA-91-A4BC-01 16 31429458 31429458 C G ITGAD Silent p.G854G 0.19 TCGA-91-A4BC-01 16 33020844 33020844 G T IGHV3OR16-8 Missense_Mutation p.K84N 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.818) TCGA-91-A4BC-01 16 3434417 3434417 G C ZSCAN32 Intron 0.08 TCGA-91-A4BC-01 16 3580618 3580618 G C CLUAP1 Missense_Mutation p.E327Q 0.13 tolerated(0.12) possibly_damaging(0.864) TCGA-91-A4BC-01 16 57513444 57513444 G A DOK4 5'UTR 0.18 TCGA-91-A4BC-01 16 65025671 65025671 T A CDH11 Missense_Mutation p.S271C 0.17 deleterious(0) possibly_damaging(0.574) TCGA-91-A4BC-01 16 68732298 68732298 G T CDH3 Missense_Mutation p.D829Y 0.31 deleterious(0) probably_damaging(0.917) TCGA-91-A4BC-01 16 69149193 69149193 A G HAS3 3'UTR 0.27 TCGA-91-A4BC-01 16 71823213 71823213 T A AP1G1 Missense_Mutation p.H57L 0.25 deleterious(0) probably_damaging(0.991) TCGA-91-A4BC-01 16 80583392 80583392 C T DYNLRB2 Nonsense_Mutation p.R31* 0.17 TCGA-91-A4BC-01 16 84124547 84124547 C A MBTPS1 Missense_Mutation p.V322L 0.16 deleterious(0) probably_damaging(0.98) TCGA-91-A4BC-01 16 84124548 84124548 C A MBTPS1 Splice_Site p.X322_splice 0.15 TCGA-91-A4BC-01 17 10216531 10216531 C A MYH13 Missense_Mutation p.W1375C 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-91-A4BC-01 17 10295923 10295923 C A MYH8 Missense_Mutation p.R1835L 0.31 deleterious(0) possibly_damaging(0.662) TCGA-91-A4BC-01 17 10312900 10312900 C A MYH8 Silent p.L531L 0.09 TCGA-91-A4BC-01 17 10354212 10354212 C A MYH4 Missense_Mutation p.G1289V 0.27 deleterious(0) probably_damaging(0.99) TCGA-91-A4BC-01 17 10443933 10443933 T G MYH2 Missense_Mutation p.Q329P 0.30 deleterious(0.04) benign(0.282) TCGA-91-A4BC-01 17 10443934 10443934 G A MYH2 Nonsense_Mutation p.Q329* 0.30 TCGA-91-A4BC-01 17 10541134 10541134 G T MYH3 Missense_Mutation p.T1283N 0.29 tolerated(0.07) possibly_damaging(0.465) TCGA-91-A4BC-01 17 11603089 11603089 G T DNAH9 Missense_Mutation p.K1638N 0.33 benign(0.014) TCGA-91-A4BC-01 17 11603152 11603152 A G DNAH9 Silent p.K1659K 0.36 TCGA-91-A4BC-01 17 18923705 18923705 C T SLC5A10 Silent p.L600L 0.17 TCGA-91-A4BC-01 17 19318467 19318467 G T RNF112 Missense_Mutation p.A415S 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.556) TCGA-91-A4BC-01 17 3119337 3119337 T A OR1A1 Nonsense_Mutation p.C141* 0.17 TCGA-91-A4BC-01 17 3337040 3337040 C T OR1E2 Silent p.L32L 0.14 TCGA-91-A4BC-01 17 34251749 34251749 T C RDM1 Missense_Mutation p.R143G 0.06 tolerated(0.5) benign(0.015) TCGA-91-A4BC-01 17 3518819 3518819 C A SHPK Missense_Mutation p.S279I 0.17 deleterious(0) possibly_damaging(0.588) TCGA-91-A4BC-01 17 36485325 36485325 G T GPR179 Missense_Mutation p.T1376N 0.20 tolerated(0.1) benign(0.079) TCGA-91-A4BC-01 17 36873053 36873053 T G MLLT6 Silent p.T490T 0.29 TCGA-91-A4BC-01 17 38122627 38122627 A T GSDMA Missense_Mutation p.N110I 0.14 tolerated(0.18) benign(0.384) TCGA-91-A4BC-01 17 39471519 39471519 G T KRTAP17-1 3'UTR 0.30 TCGA-91-A4BC-01 17 41852134 41852134 C A DUSP3 Missense_Mutation p.A100S 0.21 tolerated(0.73) benign(0.183) TCGA-91-A4BC-01 17 42635887 42635887 G A FZD2 Silent p.E277E 0.06 TCGA-91-A4BC-01 17 43884373 43884373 C A CRHR1 Intron 0.40 TCGA-91-A4BC-01 17 4496284 4496284 C T SMTNL2 Missense_Mutation p.P183L 0.14 deleterious(0.02) probably_damaging(0.919) TCGA-91-A4BC-01 17 4575007 4575007 C A PELP1 Missense_Mutation p.E1093D 0.33 unknown(0) TCGA-91-A4BC-01 17 48156475 48156475 G T ITGA3 Silent p.G812G 0.26 TCGA-91-A4BC-01 17 48193032 48193032 A T SAMD14 Missense_Mutation p.W240R 0.15 deleterious(0.02) probably_damaging(0.978) TCGA-91-A4BC-01 17 48917567 48917567 G T WFIKKN2 Missense_Mutation p.R306S 0.12 tolerated(0.21) benign(0) TCGA-91-A4BC-01 17 56572348 56572348 A T MTMR4 Missense_Mutation p.I1052N 0.29 tolerated(0.36) possibly_damaging(0.564) TCGA-91-A4BC-01 17 59878620 59878620 C G BRIP1 Missense_Mutation p.R378S 0.21 deleterious(0.01) possibly_damaging(0.652) TCGA-91-A4BC-01 17 61949937 61949937 C A CSH2 Silent p.G152G 0.12 TCGA-91-A4BC-01 17 62492934 62492934 C A POLG2 Missense_Mutation p.E51D 0.21 tolerated_low_confidence(0.12) benign(0.006) TCGA-91-A4BC-01 17 63159148 63159148 G T RGS9 Missense_Mutation p.L147F 0.24 deleterious(0) probably_damaging(1) TCGA-91-A4BC-01 17 63530192 63530192 T A AXIN2 Missense_Mutation p.K748I 0.19 deleterious(0) possibly_damaging(0.812) TCGA-91-A4BC-01 17 7576852 7576852 C A TP53 Splice_Site p.X331_splice 0.35 TCGA-91-A4BC-01 17 79556026 79556026 G A NPLOC4 Missense_Mutation p.L409F 0.08 deleterious(0.02) probably_damaging(0.969) TCGA-91-A4BC-01 17 8383492 8383492 C T MYH10 Missense_Mutation p.A1845T 0.09 possibly_damaging(0.485) TCGA-91-A4BC-01 18 12836858 12836858 C A PTPN2 Nonsense_Mutation p.E65* 0.16 TCGA-91-A4BC-01 18 13826343 13826343 G T MC5R Missense_Mutation p.M193I 0.05 tolerated(0.06) probably_damaging(0.983) TCGA-91-A4BC-01 18 13826731 13826731 A T MC5R Nonsense_Mutation p.R323* 0.09 TCGA-91-A4BC-01 18 28584155 28584155 C G DSC3 Missense_Mutation p.G689A 0.14 deleterious(0) probably_damaging(0.999) TCGA-91-A4BC-01 18 30260132 30260132 C A KLHL14 Missense_Mutation p.G530C 0.10 deleterious(0) probably_damaging(0.996) TCGA-91-A4BC-01 18 34376703 34376703 C A TPGS2 3'UTR 0.14 TCGA-91-A4BC-01 18 42618540 42618540 C T SETBP1 Missense_Mutation p.P1364L 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-91-A4BC-01 18 60795936 60795936 C A BCL2 Missense_Mutation p.W214C 0.17 deleterious(0) probably_damaging(0.979) TCGA-91-A4BC-01 18 61322889 61322889 A G SERPINB3 3'UTR 0.07 TCGA-91-A4BC-01 18 74962710 74962710 C G GALR1 Missense_Mutation p.T69S 0.07 deleterious(0) benign(0.314) TCGA-91-A4BC-01 19 11534670 11534670 G A CCDC151 Missense_Mutation p.S331F 0.05 deleterious(0.01) possibly_damaging(0.72) TCGA-91-A4BC-01 19 13010342 13010342 C T GCDH Missense_Mutation p.T435M 0.09 deleterious_low_confidence(0) benign(0.016) TCGA-91-A4BC-01 19 15586769 15586769 G A PGLYRP2 Nonsense_Mutation p.Q238* 0.24 TCGA-91-A4BC-01 19 15756592 15756592 T A CYP4F3 Missense_Mutation p.C88S 0.15 tolerated(0.13) benign(0.002) TCGA-91-A4BC-01 19 23926985 23926985 C A ZNF681 Missense_Mutation p.G456V 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-91-A4BC-01 19 41863868 41863868 G A B9D2 Nonsense_Mutation p.Q50* 0.24 TCGA-91-A4BC-01 19 43233349 43233349 C T PSG3 Missense_Mutation p.G390E 0.20 deleterious(0) probably_damaging(1) TCGA-91-A4BC-01 19 43236933 43236933 C A PSG3 Intron 0.19 TCGA-91-A4BC-01 19 43697455 43697455 C A PSG4 3'UTR 0.12 TCGA-91-A4BC-01 19 44222735 44222735 G T IRGC Missense_Mutation p.V9L 0.19 tolerated(0.21) benign(0.014) TCGA-91-A4BC-01 19 44891225 44891225 G T ZNF285 Missense_Mutation p.H394Q 0.18 deleterious(0) probably_damaging(0.994) TCGA-91-A4BC-01 19 48833641 48833641 G - EMP3 Frame_Shift_Del p.G136Dfs*? 0.17 TCGA-91-A4BC-01 19 49459548 49459548 G T BAX Silent p.R109R 0.27 TCGA-91-A4BC-01 19 51165453 51165453 G A SHANK1 Silent p.P2085P 0.23 TCGA-91-A4BC-01 19 52034212 52034212 G T SIGLEC6 Silent p.A143A 0.13 TCGA-91-A4BC-01 19 52076411 52076411 A G ZNF175 5'UTR 0.24 TCGA-91-A4BC-01 19 5456384 5456384 C T ZNRF4 Silent p.C294C 0.10 TCGA-91-A4BC-01 19 55106229 55106229 A T LILRA1 Missense_Mutation p.E57V 0.25 tolerated(0.1) possibly_damaging(0.801) TCGA-91-A4BC-01 19 55220839 55220839 T C AC098784.2 3'Flank 0.31 TCGA-91-A4BC-01 19 57327564 57327564 G T PEG3 Missense_Mutation p.A749E 0.16 deleterious(0.02) benign(0.087) TCGA-91-A4BC-01 19 6495782 6495782 G A TUBB4A Missense_Mutation p.P243L 0.16 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-91-A4BC-01 19 9070271 9070271 G T MUC16 Silent p.T5725T 0.18 TCGA-91-A4BC-01 19 9070410 9070411 - TT MUC16 Frame_Shift_Ins p.S5679Kfs*6 0.20 TCGA-91-A4BC-01 1 100568571 100568571 C A SASS6 Missense_Mutation p.Q538H 0.15 tolerated(0.08) benign(0.004) TCGA-91-A4BC-01 1 145811895 145811895 C A GPR89A Splice_Site p.X105_splice 0.16 TCGA-91-A4BC-01 1 150684033 150684033 T A HORMAD1 Silent p.P105P 0.23 TCGA-91-A4BC-01 1 151338044 151338044 C A SELENBP1 Nonsense_Mutation p.G347* 0.09 TCGA-91-A4BC-01 1 152282088 152282088 C G FLG Missense_Mutation p.R1758S 0.04 benign(0.227) TCGA-91-A4BC-01 1 152328427 152328427 C A FLG2 Missense_Mutation p.R612I 0.06 unknown(0) TCGA-91-A4BC-01 1 152884122 152884122 C T IVL 3'UTR 0.30 TCGA-91-A4BC-01 1 153430285 153430285 C A S100A7 Missense_Mutation p.Q101H 0.26 tolerated(0.1) benign(0.006) TCGA-91-A4BC-01 1 154229658 154229658 C G UBAP2L Silent p.G759G 0.05 TCGA-91-A4BC-01 1 156132761 156132761 C T SEMA4A Missense_Mutation p.A337V 0.18 deleterious(0.01) probably_damaging(0.962) TCGA-91-A4BC-01 1 156906671 156906671 C T ARHGEF11 Missense_Mutation p.A1523T 0.16 deleterious_low_confidence(0.02) benign(0.027) TCGA-91-A4BC-01 1 156908257 156908257 T A ARHGEF11 Missense_Mutation p.Q1382L 0.23 deleterious_low_confidence(0.02) benign(0.096) TCGA-91-A4BC-01 1 158651406 158651406 G C SPTA1 Missense_Mutation p.L148V 0.14 tolerated(0.26) benign(0.013) TCGA-91-A4BC-01 1 158747315 158747315 G T OR6N2 Missense_Mutation p.F37L 0.13 tolerated(0.63) benign(0.005) TCGA-91-A4BC-01 1 158747400 158747400 A T OR6N2 Missense_Mutation p.L9Q 0.26 deleterious(0) benign(0.365) TCGA-91-A4BC-01 1 159176079 159176079 C A DARC Missense_Mutation p.L286M 0.11 tolerated(0.13) possibly_damaging(0.447) TCGA-91-A4BC-01 1 160054150 160054150 C T KCNJ9 Silent p.A110A 0.11 TCGA-91-A4BC-01 1 160580501 160580502 - T SLAMF1 3'UTR 0.11 TCGA-91-A4BC-01 1 160722938 160722938 A T SLAMF7 Missense_Mutation p.R327W 0.10 deleterious(0) probably_damaging(0.924) TCGA-91-A4BC-01 1 161018044 161018044 G A ARHGAP30 Missense_Mutation p.R923C 0.07 deleterious(0) probably_damaging(0.999) TCGA-91-A4BC-01 1 161682008 161682008 G T FCRLA Missense_Mutation p.G285C 0.17 deleterious(0) probably_damaging(0.977) TCGA-91-A4BC-01 1 165322396 165322396 C A LMX1A Silent p.V60V 0.11 TCGA-91-A4BC-01 1 165875191 165875191 G T UCK2 Missense_Mutation p.G211C 0.15 deleterious(0) probably_damaging(0.948) TCGA-91-A4BC-01 1 167097550 167097550 A T DUSP27 Missense_Mutation p.N1061I 0.21 deleterious(0.01) benign(0.068) TCGA-91-A4BC-01 1 168665762 168665762 C A DPT 3'UTR 0.13 TCGA-91-A4BC-01 1 169578913 169578913 G C SELP Missense_Mutation p.P388A 0.08 tolerated(0.45) benign(0.06) TCGA-91-A4BC-01 1 173474428 173474428 C T SLC9C2 Missense_Mutation p.A1090T 0.14 tolerated(0.68) benign(0.021) TCGA-91-A4BC-01 1 175097286 175097286 C A TNN Missense_Mutation p.T1055N 0.11 deleterious(0.03) possibly_damaging(0.544) TCGA-91-A4BC-01 1 175097287 175097287 C A TNN Silent p.T1055T 0.11 TCGA-91-A4BC-01 1 175292487 175292487 C A TNR 3'UTR 0.10 TCGA-91-A4BC-01 1 176709324 176709324 G T PAPPA2 Missense_Mutation p.Q1381H 0.20 tolerated(0.13) benign(0.027) TCGA-91-A4BC-01 1 176863775 176863775 G T ASTN1 Missense_Mutation p.P955T 0.18 tolerated(0.12) benign(0.054) TCGA-91-A4BC-01 1 177245376 177245376 T C BRINP2 Missense_Mutation p.V273A 0.17 deleterious(0) benign(0.315) TCGA-91-A4BC-01 1 17743063 17743063 G A RCC2 Silent p.A313A 0.19 TCGA-91-A4BC-01 1 180775655 180775655 A G XPR1 Missense_Mutation p.M215V 0.20 deleterious(0) probably_damaging(0.987) TCGA-91-A4BC-01 1 183221827 183221827 C T NMNAT2 Silent p.P291P 0.14 TCGA-91-A4BC-01 1 186266047 186266047 C A PRG4 Missense_Mutation p.L14M 0.08 probably_damaging(0.983) TCGA-91-A4BC-01 1 190067331 190067331 G A BRINP3 Silent p.I706I 0.19 TCGA-91-A4BC-01 1 192547550 192547550 T C RGS1 Intron 0.08 TCGA-91-A4BC-01 1 196977661 196977661 C G CFHR5 Missense_Mutation p.Q520E 0.17 tolerated(0.24) benign(0.138) TCGA-91-A4BC-01 1 198509760 198509760 C A ATP6V1G3 Silent p.G7G 0.19 TCGA-91-A4BC-01 1 200080355 200080355 A G NR5A2 Missense_Mutation p.Q379R 0.16 deleterious(0) possibly_damaging(0.857) TCGA-91-A4BC-01 1 200950098 200950098 T A KIF21B Silent p.T1323T 0.11 TCGA-91-A4BC-01 1 203036893 203036893 C A PPFIA4 Silent p.R535R 0.07 TCGA-91-A4BC-01 1 205767855 205767855 G A SLC41A1 Silent p.G262G 0.17 TCGA-91-A4BC-01 1 206784708 206784708 C A EIF2D Missense_Mutation p.V26L 0.29 tolerated(0.3) probably_damaging(0.994) TCGA-91-A4BC-01 1 209807856 209807856 C G LAMB3 Missense_Mutation p.S167T 0.05 tolerated(0.22) benign(0.033) TCGA-91-A4BC-01 1 21050580 21050580 C A SH2D5 Missense_Mutation p.E265D 0.17 tolerated(0.34) probably_damaging(0.995) TCGA-91-A4BC-01 1 211280606 211280606 T C KCNH1 Missense_Mutation p.S65G 0.19 tolerated(0.36) benign(0.072) TCGA-91-A4BC-01 1 212792489 212792489 C T ATF3 Intron 0.08 TCGA-91-A4BC-01 1 216380774 216380774 C A USH2A Splice_Site p.X1053_splice 0.20 TCGA-91-A4BC-01 1 220791831 220791831 C T MARK1 Silent p.G244G 0.09 TCGA-91-A4BC-01 1 228362825 228362825 G C IBA57 Missense_Mutation p.V228L 0.08 tolerated(0.35) benign(0.279) TCGA-91-A4BC-01 1 228582781 228582781 C A TRIM11 Missense_Mutation p.W344C 0.29 deleterious(0) probably_damaging(1) TCGA-91-A4BC-01 1 232596679 232596679 C T SIPA1L2 Missense_Mutation p.V1017M 0.26 deleterious(0) probably_damaging(1) TCGA-91-A4BC-01 1 234455876 234455876 G T SLC35F3 Missense_Mutation p.V394F 0.14 tolerated(0.23) possibly_damaging(0.626) TCGA-91-A4BC-01 1 236645820 236645820 G T EDARADD Missense_Mutation p.Q173H 0.19 tolerated(0.17) benign(0.093) TCGA-91-A4BC-01 1 237791269 237791269 G T RYR2 Missense_Mutation p.G2110V 0.17 benign(0.017) TCGA-91-A4BC-01 1 237993829 237993829 G A RYR2 Splice_Site p.X4886_splice 0.13 TCGA-91-A4BC-01 1 24469567 24469567 C A IL22RA1 Missense_Mutation p.R2S 0.20 tolerated(0.09) benign(0.281) TCGA-91-A4BC-01 1 247752034 247752034 C A OR2G2 Missense_Mutation p.R125S 0.08 deleterious(0) possibly_damaging(0.806) TCGA-91-A4BC-01 1 247920902 247920902 C A OR1C1 Missense_Mutation p.E269D 0.16 tolerated(0.23) benign(0.187) TCGA-91-A4BC-01 1 248129007 248129007 C A OR2AK2 Missense_Mutation p.T125N 0.09 deleterious(0) benign(0.266) TCGA-91-A4BC-01 1 248637493 248637493 C A OR2T3 Missense_Mutation p.A281D 0.10 deleterious(0) possibly_damaging(0.864) TCGA-91-A4BC-01 1 248844748 248844748 G T OR14I1 Silent p.I286I 0.09 TCGA-91-A4BC-01 1 248844801 248844801 C A OR14I1 Missense_Mutation p.D269Y 0.12 deleterious(0.01) probably_damaging(0.988) TCGA-91-A4BC-01 1 3328988 3328988 C T PRDM16 Nonsense_Mutation p.R743* 0.07 TCGA-91-A4BC-01 1 40756559 40756559 G T ZMPSTE24 Missense_Mutation p.V365L 0.10 tolerated(0.82) benign(0.002) TCGA-91-A4BC-01 1 43778232 43778232 C A TIE1 Silent p.G629G 0.12 TCGA-91-A4BC-01 1 44878341 44878341 G T RNF220 Missense_Mutation p.G191V 0.15 tolerated(0.06) probably_damaging(0.999) TCGA-91-A4BC-01 1 51735789 51735789 G T RNF11 Missense_Mutation p.K95N 0.11 deleterious(0.02) benign(0.094) TCGA-91-A4BC-01 1 67648553 67648553 C G IL23R Silent p.V134V 0.19 TCGA-91-A4BC-01 1 7721796 7721796 C G CAMTA1 Missense_Mutation p.I225M 0.11 tolerated(0.06) possibly_damaging(0.646) TCGA-91-A4BC-01 1 79386063 79386063 T G ELTD1 Missense_Mutation p.K422N 0.14 tolerated(0.26) benign(0.008) TCGA-91-A4BC-01 1 79412052 79412052 T C ELTD1 Missense_Mutation p.T78A 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.491) TCGA-91-A4BC-01 20 2795658 2795658 G A C20orf141 5'UTR 0.27 TCGA-91-A4BC-01 20 42747168 42747168 A C JPH2 Missense_Mutation p.L422R 0.28 deleterious(0) probably_damaging(0.999) TCGA-91-A4BC-01 20 43034787 43034787 G T HNF4A Missense_Mutation p.G69C 0.32 deleterious(0) probably_damaging(0.981) TCGA-91-A4BC-01 20 43034788 43034788 G T HNF4A Missense_Mutation p.G69V 0.32 deleterious(0) possibly_damaging(0.866) TCGA-91-A4BC-01 20 46265136 46265136 C G NCOA3 Missense_Mutation p.S669C 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-91-A4BC-01 20 52773958 52773958 G T CYP24A1 Missense_Mutation p.A468E 0.37 deleterious(0) probably_damaging(1) TCGA-91-A4BC-01 20 56090862 56090862 G C CTCFL Missense_Mutation p.S363C 0.08 deleterious(0) probably_damaging(0.995) TCGA-91-A4BC-01 20 61492893 61492893 G T TCFL5 Missense_Mutation p.L44M 0.33 deleterious(0.04) possibly_damaging(0.86) TCGA-91-A4BC-01 20 62329857 62329857 G A TNFRSF6B Missense_Mutation p.V282M 0.33 tolerated(0.1) benign(0.011) TCGA-91-A4BC-01 20 62493255 62493255 G A ABHD16B Missense_Mutation p.R121H 0.36 deleterious(0.03) possibly_damaging(0.579) TCGA-91-A4BC-01 20 8608987 8608987 T G PLCB1 Missense_Mutation p.L98R 0.23 deleterious(0.03) possibly_damaging(0.726) TCGA-91-A4BC-01 20 8705371 8705371 C A PLCB1 Silent p.V550V 0.14 TCGA-91-A4BC-01 20 9364940 9364940 G T PLCB4 Missense_Mutation p.D316Y 0.16 deleterious(0) probably_damaging(0.929) TCGA-91-A4BC-01 21 19638304 19638304 T A CHODL Silent p.S257S 0.18 TCGA-91-A4BC-01 21 28338577 28338577 C T ADAMTS5 Missense_Mutation p.R45Q 0.11 tolerated_low_confidence(0.45) benign(0.001) TCGA-91-A4BC-01 21 30715097 30715097 T C BACH1 Silent p.S718S 0.08 TCGA-91-A4BC-01 21 31655030 31655030 G A KRTAP24-1 Missense_Mutation p.P74L 0.07 tolerated(0.09) benign(0.02) TCGA-91-A4BC-01 21 31812667 31812667 G C KRTAP15-1 Missense_Mutation p.G8R 0.10 tolerated(0.12) unknown(0) TCGA-91-A4BC-01 21 45103218 45103218 C T RRP1B Silent p.D285D 0.18 TCGA-91-A4BC-01 21 45987834 45987834 G T TSPEAR Missense_Mutation p.S46R 0.17 tolerated(0.57) benign(0.001) TCGA-91-A4BC-01 21 47693315 47693315 C A MCM3AP Missense_Mutation p.R728L 0.14 deleterious(0) probably_damaging(0.999) TCGA-91-A4BC-01 22 16449637 16449637 C A OR11H1 Silent p.G56G 0.08 TCGA-91-A4BC-01 22 18096048 18096048 C G ATP6V1E1 Silent p.V46V 0.13 TCGA-91-A4BC-01 22 29628248 29628248 C A EMID1 Missense_Mutation p.P227Q 0.22 deleterious(0.05) possibly_damaging(0.697) TCGA-91-A4BC-01 22 30202280 30202280 C A ASCC2 Splice_Site p.X362_splice 0.14 TCGA-91-A4BC-01 22 31859942 31859942 G A EIF4ENIF1 Missense_Mutation p.R104C 0.10 deleterious(0) probably_damaging(0.939) TCGA-91-A4BC-01 22 38822686 38822686 C A KCNJ4 3'UTR 0.17 TCGA-91-A4BC-01 22 50547228 50547228 C A MOV10L1 Nonsense_Mutation p.S233* 0.08 TCGA-91-A4BC-01 2 102626214 102626214 G T IL1R2 Missense_Mutation p.M86I 0.22 tolerated(1) benign(0.04) TCGA-91-A4BC-01 2 108488251 108488251 G T RGPD4 Missense_Mutation p.S1264I 0.21 deleterious(0.01) possibly_damaging(0.677) TCGA-91-A4BC-01 2 120439255 120439255 G A TMEM177 Missense_Mutation p.G276R 0.28 deleterious(0) probably_damaging(1) TCGA-91-A4BC-01 2 120439256 120439256 G T TMEM177 Missense_Mutation p.G276V 0.28 deleterious(0) probably_damaging(1) TCGA-91-A4BC-01 2 121107013 121107013 G T INHBB Missense_Mutation p.V263L 0.19 deleterious(0.05) benign(0.361) TCGA-91-A4BC-01 2 130948206 130948206 G C MZT2B 3'UTR 0.12 TCGA-91-A4BC-01 2 131976005 131976005 T G POTEE Silent p.A10A 0.17 TCGA-91-A4BC-01 2 131976006 131976006 G T POTEE Missense_Mutation p.A11S 0.15 deleterious_low_confidence(0) benign(0.364) TCGA-91-A4BC-01 2 136564952 136564952 C A LCT Missense_Mutation p.G1307C 0.22 deleterious(0) probably_damaging(0.998) TCGA-91-A4BC-01 2 137814159 137814159 C A THSD7B Silent p.L103L 0.32 TCGA-91-A4BC-01 2 138376030 138376031 TG - THSD7B Frame_Shift_Del p.C1217Qfs*2 0.23 TCGA-91-A4BC-01 2 141093354 141093354 G T LRP1B Missense_Mutation p.N3982K 0.23 benign(0.403) TCGA-91-A4BC-01 2 152536264 152536264 C A NEB Missense_Mutation p.A1076S 0.33 probably_damaging(0.98) TCGA-91-A4BC-01 2 1653400 1653400 C G PXDN Missense_Mutation p.A718P 0.08 deleterious(0) probably_damaging(0.98) TCGA-91-A4BC-01 2 166020174 166020175 TC - SCN3A Frame_Shift_Del p.R216Nfs*33 0.15 TCGA-91-A4BC-01 2 166153579 166153579 C A SCN2A Missense_Mutation p.P107H 0.24 deleterious(0.01) benign(0.007) TCGA-91-A4BC-01 2 167262930 167262930 G T SCN7A Silent p.A1403A 0.23 TCGA-91-A4BC-01 2 172965192 172965192 G A DLX2 3'UTR 0.25 TCGA-91-A4BC-01 2 179489205 179489205 G T TTN Missense_Mutation p.N14934K 0.26 TCGA-91-A4BC-01 2 17962023 17962023 C A GEN1 Missense_Mutation p.P515H 0.19 tolerated(0.29) benign(0.004) TCGA-91-A4BC-01 2 179642504 179642504 T C TTN Silent p.L1469L 0.25 TCGA-91-A4BC-01 2 182395322 182395322 G T ITGA4 Missense_Mutation p.M870I 0.22 tolerated(1) benign(0.002) TCGA-91-A4BC-01 2 182852548 182852548 G T PPP1R1C Missense_Mutation p.G29C 0.30 tolerated_low_confidence(0.16) benign(0) TCGA-91-A4BC-01 2 192252060 192252060 C T MYO1B Silent p.P555P 0.23 TCGA-91-A4BC-01 2 196723447 196723447 C T DNAH7 Silent p.Q2606Q 0.21 TCGA-91-A4BC-01 2 20455916 20455916 C A PUM2 Nonsense_Mutation p.E834* 0.14 TCGA-91-A4BC-01 2 206036933 206036933 A T PARD3B Splice_Site p.X479_splice 0.13 TCGA-91-A4BC-01 2 208993082 208993082 G T CRYGC Missense_Mutation p.L124I 0.15 deleterious(0.03) benign(0.166) TCGA-91-A4BC-01 2 21231138 21231138 C G APOB Missense_Mutation p.E2868Q 0.15 possibly_damaging(0.449) TCGA-91-A4BC-01 2 217124170 217124170 G A MARCH4 Silent p.G366G 0.28 TCGA-91-A4BC-01 2 238672678 238672678 G T LRRFIP1 Missense_Mutation p.L774F 0.23 deleterious(0) probably_damaging(0.918) TCGA-91-A4BC-01 2 240111690 240111690 G C HDAC4 Missense_Mutation p.P60A 0.22 tolerated(0.06) benign(0.005) TCGA-91-A4BC-01 2 240111691 240111691 C A HDAC4 Silent p.L59L 0.23 TCGA-91-A4BC-01 2 241725749 241725749 C T KIF1A Intron 0.35 TCGA-91-A4BC-01 2 3447574 3447574 G A TRAPPC12 Missense_Mutation p.R481H 0.10 deleterious(0) probably_damaging(0.983) TCGA-91-A4BC-01 2 44032304 44032304 G A DYNC2LI1 Silent p.T304T 0.10 TCGA-91-A4BC-01 2 47177659 47177659 G A TTC7A Silent p.R114R 0.21 TCGA-91-A4BC-01 2 48573635 48573635 A G FOXN2 Silent p.P94P 0.13 TCGA-91-A4BC-01 2 61473588 61473588 G T USP34 Nonsense_Mutation p.S2140* 0.11 TCGA-91-A4BC-01 2 70890767 70890767 C T ADD2 Silent p.T657T 0.19 TCGA-91-A4BC-01 2 73680168 73680168 C T ALMS1 Missense_Mutation p.L2171F 0.21 probably_damaging(0.984) TCGA-91-A4BC-01 2 89102437 89102437 T C ANKRD36BP2 RNA 0.38 TCGA-91-A4BC-01 3 100566488 100566488 G T ABI3BP Missense_Mutation p.P494T 0.07 deleterious(0.05) benign(0) TCGA-91-A4BC-01 3 108812341 108812341 G C MORC1 Missense_Mutation p.P211A 0.09 deleterious(0.02) probably_damaging(0.977) TCGA-91-A4BC-01 3 113376529 113376529 C G KIAA2018 Missense_Mutation p.D1334H 0.13 possibly_damaging(0.866) TCGA-91-A4BC-01 3 119219691 119219691 A T TIMMDC1 Missense_Mutation p.N115I 0.14 deleterious(0) possibly_damaging(0.903) TCGA-91-A4BC-01 3 119459451 119459451 A T MAATS1 Missense_Mutation p.H530L 0.10 deleterious(0) possibly_damaging(0.899) TCGA-91-A4BC-01 3 119886755 119886755 C A GPR156 Missense_Mutation p.Q523H 0.15 tolerated(0.23) benign(0.02) TCGA-91-A4BC-01 3 122646708 122646708 G T SEMA5B Missense_Mutation p.P314H 0.12 deleterious(0.04) probably_damaging(1) TCGA-91-A4BC-01 3 134920531 134920531 G T EPHB1 Missense_Mutation p.L782F 0.16 deleterious(0.01) benign(0.192) TCGA-91-A4BC-01 3 138665397 138665397 C G FOXL2 Silent p.P56P 0.08 TCGA-91-A4BC-01 3 143371146 143371146 A C SLC9A9 Missense_Mutation p.L236V 0.11 tolerated(0.57) possibly_damaging(0.801) TCGA-91-A4BC-01 3 14518786 14518786 G T SLC6A6 Missense_Mutation p.R428L 0.20 deleterious(0) possibly_damaging(0.887) TCGA-91-A4BC-01 3 164907867 164907867 G T SLITRK3 Missense_Mutation p.P251H 0.08 deleterious(0) probably_damaging(0.999) TCGA-91-A4BC-01 3 173525577 173525577 G - NLGN1 Frame_Shift_Del p.G201Afs*3 0.11 TCGA-91-A4BC-01 3 183778023 183778023 C A HTR3C Silent p.T409T 0.16 TCGA-91-A4BC-01 3 189612211 189612211 C A TP63 Silent p.R655R 0.15 TCGA-91-A4BC-01 3 195925708 195925708 C A ZDHHC19 Missense_Mutation p.G242V 0.12 deleterious(0) probably_damaging(1) TCGA-91-A4BC-01 3 21552489 21552489 G T ZNF385D Silent p.G101G 0.16 TCGA-91-A4BC-01 3 39229047 39229047 G T XIRP1 Missense_Mutation p.F630L 0.25 deleterious(0.01) possibly_damaging(0.816) TCGA-91-A4BC-01 3 47703931 47703931 T A SMARCC1 Missense_Mutation p.Q684L 0.21 deleterious(0.03) benign(0.26) TCGA-91-A4BC-01 3 51897054 51897054 C A IQCF2 Silent p.R55R 0.26 TCGA-91-A4BC-01 3 52003343 52003343 G A ABHD14B 3'UTR 0.14 TCGA-91-A4BC-01 3 52874602 52874603 TC - TMEM110 Frame_Shift_Del p.E264Dfs*84 0.08 TCGA-91-A4BC-01 3 56649263 56649263 G C CCDC66 Missense_Mutation p.K558N 0.09 deleterious(0) probably_damaging(0.998) TCGA-91-A4BC-01 3 7620487 7620487 C G GRM7 Missense_Mutation p.L632V 0.13 deleterious(0) probably_damaging(0.996) TCGA-91-A4BC-01 3 77671403 77671403 C T ROBO2 Missense_Mutation p.P1210S 0.10 tolerated(0.08) possibly_damaging(0.641) TCGA-91-A4BC-01 3 93646190 93646190 A T PROS1 Silent p.L46L 0.12 TCGA-91-A4BC-01 3 97356778 97356778 G T EPHA6 Missense_Mutation p.G879V 0.06 deleterious(0.01) probably_damaging(1) TCGA-91-A4BC-01 4 103560925 103560925 C A MANBA Silent p.G653G 0.14 TCGA-91-A4BC-01 4 104577488 104577488 C T TACR3 Missense_Mutation p.V251I 0.11 tolerated(0.08) possibly_damaging(0.678) TCGA-91-A4BC-01 4 111464013 111464013 G T ENPEP Silent p.S638S 0.21 TCGA-91-A4BC-01 4 123178442 123178442 G T KIAA1109 Missense_Mutation p.K2137N 0.21 possibly_damaging(0.821) TCGA-91-A4BC-01 4 126372621 126372621 G T FAT4 Missense_Mutation p.D3484Y 0.22 probably_damaging(1) TCGA-91-A4BC-01 4 140432853 140432853 C T SETD7 Silent p.V355V 0.21 TCGA-91-A4BC-01 4 141888968 141888968 G T RNF150 Missense_Mutation p.L182M 0.21 deleterious(0.04) probably_damaging(1) TCGA-91-A4BC-01 4 158242681 158242681 C A GRIA2 Missense_Mutation p.S271Y 0.19 deleterious(0.03) possibly_damaging(0.641) TCGA-91-A4BC-01 4 164272308 164272309 TG - NPY5R Frame_Shift_Del p.L297Tfs*31 0.13 TCGA-91-A4BC-01 4 166964527 166964527 G T TLL1 Missense_Mutation p.V494L 0.13 deleterious(0) possibly_damaging(0.676) TCGA-91-A4BC-01 4 170037777 170037777 T A SH3RF1 Silent p.A594A 0.12 TCGA-91-A4BC-01 4 170987594 170987594 A G AADAT Missense_Mutation p.I333T 0.14 tolerated(0.07) benign(0.023) TCGA-91-A4BC-01 4 175898849 175898849 C A ADAM29 Missense_Mutation p.P725T 0.14 tolerated(0.12) benign(0.001) TCGA-91-A4BC-01 4 186188132 186188132 C T SNX25 Missense_Mutation p.P141L 0.05 deleterious(0) possibly_damaging(0.817) TCGA-91-A4BC-01 4 3419185 3419185 G C RGS12 Missense_Mutation p.R893P 0.12 tolerated(0.09) possibly_damaging(0.826) TCGA-91-A4BC-01 4 36166626 36166626 C A ARAP2 Nonsense_Mutation p.E695* 0.12 TCGA-91-A4BC-01 4 41699221 41699221 G C LIMCH1 3'UTR 0.07 TCGA-91-A4BC-01 4 5018581 5018581 C T CYTL1 Missense_Mutation p.M103I 0.23 tolerated(0.37) possibly_damaging(0.816) TCGA-91-A4BC-01 4 65188510 65188510 C A TECRL Missense_Mutation p.G111V 0.17 deleterious(0.01) probably_damaging(0.921) TCGA-91-A4BC-01 4 66189839 66189839 G A EPHA5 Missense_Mutation p.P1036L 0.12 deleterious(0) benign(0.227) TCGA-91-A4BC-01 4 66189840 66189840 G T EPHA5 Missense_Mutation p.P1036T 0.13 deleterious(0) benign(0.227) TCGA-91-A4BC-01 4 70080215 70080215 C A UGT2B11 Missense_Mutation p.V76F 0.13 deleterious(0.01) benign(0.062) TCGA-91-A4BC-01 4 83838116 83838116 C A THAP9 Missense_Mutation p.P251T 0.05 tolerated(0.4) benign(0.039) TCGA-91-A4BC-01 4 96035912 96035912 C G BMPR1B Missense_Mutation p.S92C 0.05 tolerated(0.05) possibly_damaging(0.463) TCGA-91-A4BC-01 4 96469928 96469928 G T UNC5C Silent p.A27A 0.10 TCGA-91-A4BC-01 5 11111044 11111044 C A CTNND2 Nonsense_Mutation p.E797* 0.17 TCGA-91-A4BC-01 5 115298605 115298605 C G AQPEP Silent p.R97R 0.17 TCGA-91-A4BC-01 5 1212557 1212557 C A SLC6A19 Silent p.V207V 0.10 TCGA-91-A4BC-01 5 128863457 128863457 A T ADAMTS19 Missense_Mutation p.Q362L 0.14 deleterious(0.01) probably_damaging(0.975) TCGA-91-A4BC-01 5 136314519 136314519 T A SPOCK1 Missense_Mutation p.T382S 0.20 tolerated(0.74) possibly_damaging(0.849) TCGA-91-A4BC-01 5 139060436 139060436 G T CXXC5 Missense_Mutation p.A110S 0.12 tolerated(0.37) benign(0.044) TCGA-91-A4BC-01 5 140250297 140250297 C A PCDHA11 Missense_Mutation p.R537S 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.714) TCGA-91-A4BC-01 5 140389496 140389496 A T PCDHAC1 Missense_Mutation p.S956C 0.12 deleterious(0) probably_damaging(0.979) TCGA-91-A4BC-01 5 140475239 140475239 G T PCDHB2 Missense_Mutation p.D289Y 0.09 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-91-A4BC-01 5 140616187 140616187 C A PCDHB18 RNA 0.10 TCGA-91-A4BC-01 5 140745865 140745865 C T PCDHGA5 Silent p.A656A 0.10 TCGA-91-A4BC-01 5 145239355 145239355 G T GRXCR2 Missense_Mutation p.L230M 0.10 deleterious(0) probably_damaging(1) TCGA-91-A4BC-01 5 147040727 147040727 G T JAKMIP2 Silent p.A137A 0.08 TCGA-91-A4BC-01 5 156649954 156649954 C A ITK Silent p.R193R 0.14 TCGA-91-A4BC-01 5 163267 163267 G T PLEKHG4B Missense_Mutation p.R671L 0.27 tolerated(0.3) benign(0) TCGA-91-A4BC-01 5 167525118 167525118 C A TENM2 Missense_Mutation p.A600E 0.17 tolerated(0.14) benign(0.138) TCGA-91-A4BC-01 5 169230142 169230142 G A DOCK2 Missense_Mutation p.V879I 0.09 tolerated(0.43) benign(0.002) TCGA-91-A4BC-01 5 173317337 173317337 A G CPEB4 Missense_Mutation p.N201D 0.09 tolerated_low_confidence(0.12) benign(0.007) TCGA-91-A4BC-01 5 176562339 176562339 G T NSD1 Missense_Mutation p.A79S 0.06 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-91-A4BC-01 5 180218759 180218759 C A MGAT1 Missense_Mutation p.D405Y 0.13 possibly_damaging(0.773) TCGA-91-A4BC-01 5 180218760 180218760 C A MGAT1 Missense_Mutation p.M404I 0.13 probably_damaging(1) TCGA-91-A4BC-01 5 23522436 23522436 A T PRDM9 Nonsense_Mutation p.R178* 0.19 TCGA-91-A4BC-01 5 24491930 24491930 G T CDH10 Missense_Mutation p.T544N 0.22 deleterious(0.01) probably_damaging(0.911) TCGA-91-A4BC-01 5 33751398 33751398 A G ADAMTS12 Intron 0.32 TCGA-91-A4BC-01 5 38370436 38370436 G T EGFLAM Missense_Mutation p.R195L 0.18 tolerated_low_confidence(0.14) benign(0.255) TCGA-91-A4BC-01 5 41054873 41054873 G C MROH2B Missense_Mutation p.T368R 0.11 tolerated(0.53) benign(0.037) TCGA-91-A4BC-01 5 45262321 45262321 G A HCN1 Missense_Mutation p.S792L 0.11 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-91-A4BC-01 5 50055520 50055520 A G PARP8 Silent p.L76L 0.12 TCGA-91-A4BC-01 5 56777988 56777988 C A ACTBL2 Missense_Mutation p.G183W 0.15 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-91-A4BC-01 5 7414808 7414808 G A ADCY2 Silent p.L111L 0.18 TCGA-91-A4BC-01 5 87501662 87501662 C A TMEM161B Missense_Mutation p.A257S 0.17 tolerated(0.12) probably_damaging(0.998) TCGA-91-A4BC-01 5 88119634 88119634 C T MEF2C 5'UTR 0.16 TCGA-91-A4BC-01 6 102483308 102483308 G C GRIK2 Missense_Mutation p.Q726H 0.06 tolerated(0.11) benign(0.017) TCGA-91-A4BC-01 6 130762208 130762208 C T TMEM200A Missense_Mutation p.S214L 0.25 tolerated(0.36) benign(0.091) TCGA-91-A4BC-01 6 132891796 132891796 T A TAAR6 Missense_Mutation p.D112E 0.15 deleterious(0.04) benign(0.314) TCGA-91-A4BC-01 6 139487651 139487651 G T HECA Missense_Mutation p.G168C 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-91-A4BC-01 6 142725014 142725014 G T GPR126 Silent p.R677R 0.10 TCGA-91-A4BC-01 6 146708034 146708034 G C GRM1 Silent p.R537R 0.11 TCGA-91-A4BC-01 6 152651957 152651957 C A SYNE1 Silent p.T4621T 0.09 TCGA-91-A4BC-01 6 25983445 25983445 G A TRIM38 Missense_Mutation p.D310N 0.27 tolerated(0.25) benign(0.203) TCGA-91-A4BC-01 6 2683263 2683263 C A MYLK4 Missense_Mutation p.D227Y 0.25 deleterious(0.02) probably_damaging(0.974) TCGA-91-A4BC-01 6 28053273 28053273 A T ZNF165 Silent p.P5P 0.32 TCGA-91-A4BC-01 6 28331556 28331556 G T ZKSCAN3 Nonsense_Mutation p.E241* 0.34 TCGA-91-A4BC-01 6 32713634 32713634 G A HLA-DQA2 Missense_Mutation p.C133Y 0.21 deleterious(0) probably_damaging(1) TCGA-91-A4BC-01 6 41029082 41029082 C A APOBEC2 Silent p.A49A 0.14 TCGA-91-A4BC-01 6 41711123 41711123 A G PGC Silent p.S111S 0.15 TCGA-91-A4BC-01 6 43097983 43097983 G T PTK7 Missense_Mutation p.W170C 0.18 deleterious(0) probably_damaging(0.997) TCGA-91-A4BC-01 6 46657374 46657374 G T TDRD6 Missense_Mutation p.W503C 0.16 deleterious(0.04) probably_damaging(0.929) TCGA-91-A4BC-01 6 52696599 52696599 C A GSTA5 3'UTR 0.08 TCGA-91-A4BC-01 6 55659200 55659200 T A BMP5 Missense_Mutation p.T237S 0.12 tolerated(0.74) benign(0.002) TCGA-91-A4BC-01 6 57398198 57398198 C A PRIM2 Missense_Mutation p.L301I 0.05 deleterious(0) probably_damaging(1) TCGA-91-A4BC-01 6 66112376 66112376 A T EYS Silent p.P393P 0.09 TCGA-91-A4BC-01 6 69666069 69666069 C A BAI3 Missense_Mutation p.P450H 0.23 tolerated(0.09) possibly_damaging(0.76) TCGA-91-A4BC-01 6 70916970 70916970 G A COL19A1 Missense_Mutation p.G1141R 0.07 deleterious_low_confidence(0) probably_damaging(1) TCGA-91-A4BC-01 6 74497081 74497081 C A CD109 Missense_Mutation p.P821H 0.10 deleterious(0) probably_damaging(0.98) TCGA-91-A4BC-01 6 8097506 8097506 C G EEF1E1 Silent p.L94L 0.20 TCGA-91-A4BC-01 6 82906044 82906044 T A IBTK Missense_Mutation p.T1049S 0.20 tolerated(0.17) benign(0.001) TCGA-91-A4BC-01 6 87725426 87725426 C A HTR1E Missense_Mutation p.T125N 0.08 deleterious(0) probably_damaging(1) TCGA-91-A4BC-01 7 100028625 100028625 G A MEPCE Silent p.V328V 0.29 TCGA-91-A4BC-01 7 100466340 100466340 C A TRIP6 Missense_Mutation p.P196Q 0.15 deleterious(0.02) possibly_damaging(0.502) TCGA-91-A4BC-01 7 105644980 105644980 G T CDHR3 Missense_Mutation p.R300L 0.30 tolerated(0.09) probably_damaging(0.968) TCGA-91-A4BC-01 7 106508409 106508409 A T PIK3CG Missense_Mutation p.I135F 0.27 deleterious(0.01) possibly_damaging(0.84) TCGA-91-A4BC-01 7 107601720 107601720 C G LAMB1 Silent p.V680V 0.35 TCGA-91-A4BC-01 7 107698367 107698367 C T LAMB4 Missense_Mutation p.G1097S 0.26 deleterious(0.01) probably_damaging(1) TCGA-91-A4BC-01 7 11630163 11630163 G T THSD7A Silent p.I459I 0.19 TCGA-91-A4BC-01 7 128489246 128489246 G A FLNC Missense_Mutation p.G1647S 0.35 deleterious(0.02) probably_damaging(1) TCGA-91-A4BC-01 7 129856239 129856239 C A SSMEM1 Missense_Mutation p.P222T 0.29 tolerated(1) benign(0.012) TCGA-91-A4BC-01 7 141490336 141490336 C T TAS2R5 Nonsense_Mutation p.Q59* 0.08 TCGA-91-A4BC-01 7 141673225 141673225 T A TAS2R38 Missense_Mutation p.N89Y 0.26 deleterious(0) probably_damaging(0.936) TCGA-91-A4BC-01 7 142378858 142378858 T C MTRNR2L6 3'Flank 0.41 TCGA-91-A4BC-01 7 142991330 142991330 G T CASP2 Silent p.V161V 0.35 TCGA-91-A4BC-01 7 150171403 150171403 T A GIMAP8 Missense_Mutation p.L329Q 0.33 deleterious(0) probably_damaging(1) TCGA-91-A4BC-01 7 22766941 22766941 G T IL6 Intron 0.32 TCGA-91-A4BC-01 7 2472659 2472659 C T CHST12 Missense_Mutation p.R129W 0.10 tolerated(0.06) possibly_damaging(0.776) TCGA-91-A4BC-01 7 27134936 27134936 G T HOXA1 Missense_Mutation p.S199Y 0.06 deleterious(0.03) probably_damaging(0.983) TCGA-91-A4BC-01 7 30008609 30008609 C - SCRN1 Frame_Shift_Del p.N47Ifs*42 0.17 TCGA-91-A4BC-01 7 31746945 31746945 G T PPP1R17 3'UTR 0.35 TCGA-91-A4BC-01 7 4955700 4955700 G T MMD2 Missense_Mutation p.H101N 0.17 tolerated(0.23) benign(0.068) TCGA-91-A4BC-01 7 49951632 49951632 C A VWC2 Missense_Mutation p.P277T 0.35 deleterious(0) probably_damaging(0.997) TCGA-91-A4BC-01 7 70800566 70800566 G T WBSCR17 Missense_Mutation p.G90V 0.27 deleterious(0) probably_damaging(0.998) TCGA-91-A4BC-01 7 72849910 72849910 G T FZD9 Missense_Mutation p.G525C 0.34 deleterious(0) probably_damaging(1) TCGA-91-A4BC-01 7 88424010 88424010 C A C7orf62 Nonsense_Mutation p.E83* 0.06 TCGA-91-A4BC-01 7 88966331 88966331 C G ZNF804B Silent p.S1345S 0.19 TCGA-91-A4BC-01 7 92733916 92733916 C G SAMD9 Missense_Mutation p.D499H 0.29 deleterious(0) probably_damaging(0.995) TCGA-91-A4BC-01 7 92838100 92838100 C A HEPACAM2 Missense_Mutation p.D269Y 0.13 tolerated(0.14) benign(0.032) TCGA-91-A4BC-01 7 98257810 98257810 G T NPTX2 Missense_Mutation p.V389F 0.44 tolerated(0.22) benign(0.195) TCGA-91-A4BC-01 7 98554099 98554099 C T TRRAP Silent p.S2051S 0.30 TCGA-91-A4BC-01 8 10465881 10465881 C A RP1L1 Silent p.P1909P 0.10 TCGA-91-A4BC-01 8 105160909 105160909 G T RIMS2 Intron 0.13 TCGA-91-A4BC-01 8 113326177 113326177 C G CSMD3 Missense_Mutation p.D2552H 0.05 deleterious(0) probably_damaging(0.944) TCGA-91-A4BC-01 8 113657431 113657431 C T CSMD3 Missense_Mutation p.G1073R 0.10 deleterious(0.01) possibly_damaging(0.77) TCGA-91-A4BC-01 8 120103386 120103386 A T COLEC10 Splice_Site p.X74_splice 0.06 TCGA-91-A4BC-01 8 124664210 124664210 C A KLHL38 Silent p.P319P 0.10 TCGA-91-A4BC-01 8 133807005 133807005 G A PHF20L1 Silent p.L94L 0.15 TCGA-91-A4BC-01 8 133981732 133981732 T A TG Missense_Mutation p.Y1965N 0.07 deleterious(0) probably_damaging(0.999) TCGA-91-A4BC-01 8 144733100 144733100 G C ZNF623 Missense_Mutation p.G353A 0.16 deleterious(0.01) probably_damaging(0.988) TCGA-91-A4BC-01 8 144943195 144943195 C A EPPK1 Silent p.R1409R 0.17 TCGA-91-A4BC-01 8 15480638 15480638 G T TUSC3 Missense_Mutation p.R63L 0.18 deleterious(0) possibly_damaging(0.809) TCGA-91-A4BC-01 8 16021573 16021573 C A MSR1 Splice_Site p.X273_splice 0.11 TCGA-91-A4BC-01 8 16021574 16021574 C A MSR1 Missense_Mutation p.G273C 0.11 deleterious(0) probably_damaging(1) TCGA-91-A4BC-01 8 27472195 27472195 C G CLU 5'UTR 0.14 TCGA-91-A4BC-01 8 2832048 2832048 C A CSMD1 Nonsense_Mutation p.E2889* 0.16 TCGA-91-A4BC-01 8 30695124 30695124 C A TEX15 Silent p.S2509S 0.26 TCGA-91-A4BC-01 8 3216823 3216823 G C CSMD1 Missense_Mutation p.A1052G 0.20 probably_damaging(0.999) TCGA-91-A4BC-01 8 38279319 38279319 C A FGFR1 Silent p.L390L 0.16 TCGA-91-A4BC-01 8 41552167 41552167 C T ANK1 Silent p.L1131L 0.11 TCGA-91-A4BC-01 8 53570108 53570108 C A RB1CC1 Missense_Mutation p.V761L 0.05 deleterious_low_confidence(0.03) probably_damaging(0.99) TCGA-91-A4BC-01 8 55537994 55537994 G T RP1 Missense_Mutation p.V518F 0.26 tolerated(0.39) possibly_damaging(0.59) TCGA-91-A4BC-01 8 57026209 57026209 C A MOS Missense_Mutation p.R111S 0.06 tolerated(0.1) possibly_damaging(0.72) TCGA-91-A4BC-01 8 6914254 6914254 G T DEFA5 5'UTR 0.29 TCGA-91-A4BC-01 8 7320342 7320342 T A SPAG11B Missense_Mutation p.E34V 0.09 deleterious(0) benign(0.144) TCGA-91-A4BC-01 8 74742676 74742676 T A UBE2W Missense_Mutation p.Q56L 0.28 tolerated(0.17) benign(0.006) TCGA-91-A4BC-01 8 86244718 86244718 C T CA1 Splice_Site p.X171_splice 0.06 TCGA-91-A4BC-01 8 87552538 87552538 C T CPNE3 Silent p.Y203Y 0.28 TCGA-91-A4BC-01 8 89058946 89058946 C A MMP16 Missense_Mutation p.W480C 0.09 deleterious(0) probably_damaging(1) TCGA-91-A4BC-01 9 101829314 101829314 G T COL15A1 Missense_Mutation p.A1268S 0.14 tolerated(0.12) benign(0.395) TCGA-91-A4BC-01 9 104448921 104448921 C A GRIN3A Nonsense_Mutation p.E421* 0.08 TCGA-91-A4BC-01 9 117848660 117848660 G A TNC Silent p.V450V 0.10 TCGA-91-A4BC-01 9 124103418 124103418 A G STOM 3'UTR 0.07 TCGA-91-A4BC-01 9 125424359 125424359 G C OR1L1 Missense_Mutation p.R122P 0.11 deleterious(0) probably_damaging(0.975) TCGA-91-A4BC-01 9 125627701 125627701 C A RC3H2 Missense_Mutation p.V521L 0.14 tolerated(0.7) benign(0.013) TCGA-91-A4BC-01 9 125659558 125659558 C G RC3H2 Missense_Mutation p.Q77H 0.24 deleterious(0.01) probably_damaging(0.965) TCGA-91-A4BC-01 9 125898355 125898355 C T STRBP Missense_Mutation p.A580T 0.13 tolerated(0.25) benign(0.064) TCGA-91-A4BC-01 9 126146185 126146185 G C DENND1A Missense_Mutation p.P529A 0.13 tolerated(0.13) possibly_damaging(0.488) TCGA-91-A4BC-01 9 127549447 127549447 C A OLFML2A Missense_Mutation p.S95Y 0.11 deleterious(0) probably_damaging(0.991) TCGA-91-A4BC-01 9 130513535 130513535 G T SH2D3C Silent p.L200L 0.21 TCGA-91-A4BC-01 9 133943462 133943462 C A LAMC3 Intron 0.19 TCGA-91-A4BC-01 9 136597662 136597662 C G SARDH Silent p.R131R 0.11 TCGA-91-A4BC-01 9 14313598 14313598 G C NFIB 5'UTR 0.16 TCGA-91-A4BC-01 9 17330758 17330758 G T CNTLN Missense_Mutation p.K490N 0.05 tolerated(0.19) benign(0.004) TCGA-91-A4BC-01 9 32633460 32633460 A T TAF1L Missense_Mutation p.N706K 0.06 deleterious(0) possibly_damaging(0.707) TCGA-91-A4BC-01 9 34971618 34971618 C A KIAA1045 Missense_Mutation p.T108N 0.16 deleterious(0.02) benign(0.206) TCGA-91-A4BC-01 9 4117986 4117986 C A GLIS3 Missense_Mutation p.G498C 0.19 deleterious(0) probably_damaging(0.958) TCGA-91-A4BC-01 9 6477774 6477774 C A UHRF2 Missense_Mutation p.P376T 0.21 deleterious(0) probably_damaging(0.998) TCGA-91-A4BC-01 9 72086608 72086608 T A APBA1 Nonsense_Mutation p.R434* 0.20 TCGA-91-A4BC-01 9 78804097 78804097 A T PCSK5 Missense_Mutation p.Y823F 0.10 tolerated(0.07) probably_damaging(0.961) TCGA-91-A4BC-01 9 84532393 84532393 C T SPATA31D5P RNA 0.10 TCGA-91-A4BC-01 9 90502271 90502271 G T SPATA31E1 Missense_Mutation p.G957W 0.12 tolerated(0.08) benign(0.002) TCGA-91-A4BC-01 9 90535489 90535489 C A SPATA31C1 RNA 0.06 TCGA-91-A4BC-01 9 98691075 98691075 A G ERCC6L2 Silent p.S571S 0.10 TCGA-91-A4BC-01 X 102005459 102005459 C T BHLHB9 Silent p.N512N 0.24 TCGA-91-A4BC-01 X 105011295 105011295 C A IL1RAPL2 Missense_Mutation p.H568N 0.26 tolerated(0.12) benign(0.004) TCGA-91-A4BC-01 X 105278270 105278270 C T SERPINA7 Missense_Mutation p.D334N 0.07 tolerated(0.07) benign(0.028) TCGA-91-A4BC-01 X 108684639 108684639 A T GUCY2F Missense_Mutation p.F548I 0.31 tolerated(0.46) benign(0.005) TCGA-91-A4BC-01 X 110459767 110459767 C A PAK3 Missense_Mutation p.S545Y 0.23 deleterious(0) probably_damaging(0.954) TCGA-91-A4BC-01 X 110951510 110951510 C T ALG13 Silent p.S213S 0.14 TCGA-91-A4BC-01 X 111156019 111156019 T A TRPC5 Missense_Mutation p.T134S 0.24 tolerated(0.56) benign(0.002) TCGA-91-A4BC-01 X 112033822 112033822 C A AMOT Missense_Mutation p.Q705H 0.38 unknown(0) TCGA-91-A4BC-01 X 123540246 123540246 C A TENM1 Missense_Mutation p.E1692D 0.26 tolerated(1) benign(0.032) TCGA-91-A4BC-01 X 127185589 127185589 G T ACTRT1 Missense_Mutation p.S199R 0.24 tolerated(1) probably_damaging(0.96) TCGA-91-A4BC-01 X 130409250 130409250 G - IGSF1 Frame_Shift_Del p.K1071Nfs*5 0.19 TCGA-91-A4BC-01 X 130409619 130409619 C A IGSF1 Missense_Mutation p.G1011V 0.26 tolerated(0.24) benign(0.007) TCGA-91-A4BC-01 X 130409620 130409620 C A IGSF1 Nonsense_Mutation p.G1011* 0.26 TCGA-91-A4BC-01 X 13337405 13337405 C T ATXN3L Missense_Mutation p.D217N 0.31 tolerated(0.1) benign(0.127) TCGA-91-A4BC-01 X 147062849 147062849 G A FMR1NB 5'UTR 0.29 TCGA-91-A4BC-01 X 14933851 14933851 G A MOSPD2 Missense_Mutation p.G384D 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-91-A4BC-01 X 152713178 152713178 C A HAUS7 3'UTR 0.28 TCGA-91-A4BC-01 X 15444094 15444094 G A PIR Missense_Mutation p.T167I 0.34 deleterious(0.01) probably_damaging(0.982) TCGA-91-A4BC-01 X 155004534 155004534 G A SPRY3 3'UTR 0.43 TCGA-91-A4BC-01 X 155233169 155233169 C - IL9R Frame_Shift_Del p.H67Tfs*98 0.14 TCGA-91-A4BC-01 X 18259465 18259465 C A SCML2 Missense_Mutation p.S670I 0.25 deleterious(0) probably_damaging(0.996) TCGA-91-A4BC-01 X 30260947 30260947 G T MAGEB4 Missense_Mutation p.G232V 0.17 deleterious(0) probably_damaging(0.986) TCGA-91-A4BC-01 X 3238247 3238247 C T MXRA5 Missense_Mutation p.G1827R 0.28 tolerated(0.81) benign(0.003) TCGA-91-A4BC-01 X 34148074 34148074 A T FAM47A Silent p.R774R 0.30 TCGA-91-A4BC-01 X 35971761 35971761 G A CXorf22 Missense_Mutation p.A367T 0.19 deleterious(0.01) probably_damaging(0.939) TCGA-91-A4BC-01 X 37285103 37285103 G T PRRG1 Silent p.T7T 0.20 TCGA-91-A4BC-01 X 41206239 41206239 G - DDX3X Frame_Shift_Del p.G582Vfs*87 0.20 TCGA-91-A4BC-01 X 47919879 47919879 C A ZNF630 Missense_Mutation p.G63V 0.12 deleterious(0.02) benign(0.31) TCGA-91-A4BC-01 X 47919880 47919880 C A ZNF630 Nonsense_Mutation p.G63* 0.12 TCGA-91-A4BC-01 X 54800582 54800582 G T ITIH6 Missense_Mutation p.P279T 0.23 tolerated(0.26) possibly_damaging(0.882) TCGA-91-A4BC-01 X 77912751 77912751 G T ZCCHC5 Nonsense_Mutation p.C389* 0.26 TCGA-91-A4BC-01 X 9673087 9673087 C T TBL1X Missense_Mutation p.T390I 0.27 deleterious(0.01) possibly_damaging(0.612) TCGA-91-A4BC-01 X 99662343 99662343 T A PCDH19 Missense_Mutation p.Q418L 0.23 deleterious(0.02) benign(0.209) TCGA-91-A4BC-01 Y 4966533 4966533 C A PCDH11Y Missense_Mutation p.A305D 0.31 deleterious(0) probably_damaging(1) TCGA-91-A4BD-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.39 TCGA-91-A4BD-01 11 4471294 4471294 C A OR52K2 Missense_Mutation p.T242K 0.28 deleterious(0) possibly_damaging(0.794) TCGA-91-A4BD-01 11 61645010 61645010 C T FADS3 Silent p.A286A 0.23 TCGA-91-A4BD-01 11 67021837 67021837 C T KDM2A Silent p.L1085L 0.15 TCGA-91-A4BD-01 14 103593769 103593769 C T TNFAIP2 Silent p.G221G 0.21 TCGA-91-A4BD-01 15 42003311 42003311 C T MGA Nonsense_Mutation p.Q950* 0.18 TCGA-91-A4BD-01 15 73862761 73862761 T C NPTN Missense_Mutation p.I282V 0.21 tolerated(0.08) benign(0.002) TCGA-91-A4BD-01 15 93595488 93595488 C T RGMA Missense_Mutation p.R135H 0.21 deleterious(0.04) benign(0.116) TCGA-91-A4BD-01 16 4164782 4164782 A G ADCY9 Missense_Mutation p.V221A 0.28 tolerated(0.05) probably_damaging(0.952) TCGA-91-A4BD-01 16 4790576 4790576 G A C16orf71 Silent p.A233A 0.06 TCGA-91-A4BD-01 17 39739887 39739887 C T KRT14 Silent p.L323L 0.18 TCGA-91-A4BD-01 17 47794987 47794987 G A FAM117A Silent p.N266N 0.22 TCGA-91-A4BD-01 19 15839076 15839076 G A OR10H2 Missense_Mutation p.V75M 0.25 tolerated(0.11) benign(0.148) TCGA-91-A4BD-01 19 34263913 34263913 A G CHST8 Missense_Mutation p.Y407C 0.33 deleterious(0) probably_damaging(1) TCGA-91-A4BD-01 19 54080589 54080589 A T ZNF331 Missense_Mutation p.I259F 0.24 tolerated(0.07) probably_damaging(0.924) TCGA-91-A4BD-01 20 35060511 35060512 - T DLGAP4 Frame_Shift_Ins p.A131Vfs*4 0.18 TCGA-91-A4BD-01 20 44258523 44258523 G A WFDC10A Missense_Mutation p.R24H 0.17 tolerated(0.4) possibly_damaging(0.84) TCGA-91-A4BD-01 21 34652077 34652077 A T IL10RB Missense_Mutation p.M118L 0.23 tolerated(0.15) benign(0.003) TCGA-91-A4BD-01 21 42748785 42748785 T C MX2 5'UTR 0.23 TCGA-91-A4BD-01 2 136575021 136575021 G A LCT Missense_Mutation p.R533C 0.26 deleterious(0) probably_damaging(0.998) TCGA-91-A4BD-01 3 39228755 39228755 A G XIRP1 Missense_Mutation p.F728L 0.13 deleterious(0.01) probably_damaging(0.975) TCGA-91-A4BD-01 3 48423216 48423216 G A FBXW12 Missense_Mutation p.A338T 0.22 tolerated(0.12) benign(0.002) TCGA-91-A4BD-01 3 88199176 88199176 C G C3orf38 5'UTR 0.19 TCGA-91-A4BD-01 4 93511314 93511314 G A GRID2 Missense_Mutation p.D41N 0.09 deleterious(0.01) benign(0.419) TCGA-91-A4BD-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.29 deleterious(0) probably_damaging(0.967) TCGA-91-A4BD-01 7 142622591 142622591 A T TRPV5 Intron 0.27 TCGA-91-A4BD-01 7 50450266 50450266 C T IKZF1 Silent p.C150C 0.39 TCGA-91-A4BD-01 7 75617065 75617065 C T POR 3'Flank 0.14 TCGA-93-7347-01 10 127548457 127548461 ATGAA - DHX32 Frame_Shift_Del p.I187Rfs*7 0.11 TCGA-93-7347-01 10 73406352 73406352 G T CDH23 Missense_Mutation p.G68V 0.12 deleterious(0) possibly_damaging(0.804) TCGA-93-7347-01 10 95720433 95720433 G T PIPSL RNA 0.15 TCGA-93-7347-01 11 106856830 106856830 T A GUCY1A2 Missense_Mutation p.R111W 0.15 deleterious(0) probably_damaging(0.961) TCGA-93-7347-01 11 113803729 113803729 G A HTR3B Missense_Mutation p.D204N 0.12 tolerated(0.17) probably_damaging(0.981) TCGA-93-7347-01 11 126174154 126174154 A T RP11-712L6.5 Missense_Mutation p.L3M 0.16 unknown(0) TCGA-93-7347-01 11 1263477 1263477 G A MUC5B Silent p.E1789E 0.11 TCGA-93-7347-01 11 128680399 128680399 C T FLI1 Missense_Mutation p.S292F 0.24 deleterious(0) probably_damaging(0.999) TCGA-93-7347-01 11 129246035 129246035 C A BARX2 Silent p.T35T 0.15 TCGA-93-7347-01 11 14526749 14526749 T C PSMA1 Missense_Mutation p.M267V 0.11 deleterious(0.05) benign(0.14) TCGA-93-7347-01 11 18755170 18755170 C G PTPN5 Missense_Mutation p.R338T 0.04 deleterious(0) probably_damaging(1) TCGA-93-7347-01 11 4409573 4409573 T A TRIM21 Missense_Mutation p.E231V 0.13 deleterious(0) probably_damaging(0.965) TCGA-93-7347-01 11 5221240 5221240 G A OR51V1 Missense_Mutation p.L231F 0.11 deleterious(0.03) benign(0.4) TCGA-93-7347-01 11 55321821 55321821 A T OR4C15 Silent p.A13A 0.15 TCGA-93-7347-01 11 55890560 55890560 T A OR8H3 Missense_Mutation p.F238I 0.13 deleterious(0.02) probably_damaging(0.928) TCGA-93-7347-01 11 55904714 55904714 G T OR8J3 Missense_Mutation p.P161T 0.13 tolerated(0.18) benign(0.155) TCGA-93-7347-01 11 57799060 57799060 G A OR6Q1 Silent p.L212L 0.17 TCGA-93-7347-01 11 62554190 62554190 C T TAF6L Missense_Mutation p.P431S 0.12 tolerated_low_confidence(0.1) benign(0.024) TCGA-93-7347-01 11 65631311 65631311 A T MUS81 Missense_Mutation p.E333V 0.20 deleterious(0.02) probably_damaging(0.965) TCGA-93-7347-01 12 100048885 100048885 C A ANKS1B Missense_Mutation p.C411F 0.18 deleterious(0.04) probably_damaging(0.986) TCGA-93-7347-01 12 132281798 132281798 A G SFSWAP Silent p.S922S 0.16 TCGA-93-7347-01 12 132610979 132610979 G T RP13-977J11.5 3'Flank 0.22 TCGA-93-7347-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.07 deleterious(0.04) probably_damaging(0.993) TCGA-93-7347-01 12 32134631 32134631 C T KIAA1551 Nonsense_Mutation p.Q248* 0.08 TCGA-93-7347-01 12 32458919 32458919 C T BICD1 Missense_Mutation p.H290Y 0.08 deleterious(0.02) benign(0.219) TCGA-93-7347-01 12 57587439 57587439 G T LRP1 Missense_Mutation p.G2592V 0.25 probably_damaging(1) TCGA-93-7347-01 12 6309607 6309607 C A CD9 5'UTR 0.19 TCGA-93-7347-01 12 85638600 85638600 G C LRRIQ1 Missense_Mutation p.D1684H 0.17 deleterious(0) probably_damaging(0.982) TCGA-93-7347-01 13 101712256 101712256 G A NALCN Missense_Mutation p.R1607W 0.05 deleterious(0.01) benign(0.28) TCGA-93-7347-01 13 20398582 20398582 T C ZMYM5 3'UTR 0.14 TCGA-93-7347-01 14 21836475 21836475 T G SUPT16H Missense_Mutation p.N303T 0.13 tolerated(0.46) benign(0.004) TCGA-93-7347-01 14 21873479 21873479 C A CHD8 Nonsense_Mutation p.E1066* 0.30 TCGA-93-7347-01 14 60976318 60976318 C A SIX6 Missense_Mutation p.R68S 0.21 tolerated(0.05) benign(0.092) TCGA-93-7347-01 14 96157665 96157665 G C TCL1B 3'UTR 0.09 TCGA-93-7347-01 14 99871602 99871602 C A SETD3 Missense_Mutation p.S344I 0.23 deleterious(0) possibly_damaging(0.779) TCGA-93-7347-01 15 31294305 31294305 A T TRPM1 Missense_Mutation p.V1550D 0.04 tolerated_low_confidence(0.62) benign(0.001) TCGA-93-7347-01 15 81593853 81593853 G T IL16 Missense_Mutation p.K1106N 0.14 deleterious(0) probably_damaging(0.938) TCGA-93-7347-01 16 22926638 22926638 C A HS3ST2 Silent p.R287R 0.11 TCGA-93-7347-01 16 23702633 23702633 C T ERN2 Silent p.P878P 0.05 TCGA-93-7347-01 16 28734627 28734627 G T EIF3C Nonsense_Mutation p.G307* 0.06 TCGA-93-7347-01 16 30964750 30964750 G C ORAI3 Missense_Mutation p.G158A 0.15 deleterious(0) probably_damaging(1) TCGA-93-7347-01 16 31073432 31073432 T A ZNF668 Missense_Mutation p.T296S 0.07 tolerated(0.17) possibly_damaging(0.75) TCGA-93-7347-01 16 3533551 3533551 A G NAA60 Missense_Mutation p.T176A 0.08 tolerated(0.07) benign(0.141) TCGA-93-7347-01 16 46649880 46649880 C A SHCBP1 Missense_Mutation p.A192S 0.12 deleterious(0.02) benign(0.382) TCGA-93-7347-01 16 61689518 61689518 T A CDH8 Missense_Mutation p.S588C 0.15 deleterious(0) probably_damaging(0.975) TCGA-93-7347-01 16 64981505 64981505 G A CDH11 3'UTR 0.13 TCGA-93-7347-01 16 67579635 67579635 G A FAM65A Missense_Mutation p.E1107K 0.07 deleterious(0) possibly_damaging(0.635) TCGA-93-7347-01 17 17057722 17057722 G T MPRIP Missense_Mutation p.V490L 0.16 deleterious(0) benign(0.036) TCGA-93-7347-01 17 18023545 18023545 C A MYO15A Missense_Mutation p.F477L 0.34 benign(0.153) TCGA-93-7347-01 17 26822805 26822805 A G SLC13A2 Missense_Mutation p.T530A 0.14 deleterious(0.01) possibly_damaging(0.9) TCGA-93-7347-01 17 27939023 27939023 A G ANKRD13B Missense_Mutation p.K367E 0.12 deleterious(0) possibly_damaging(0.525) TCGA-93-7347-01 17 8731998 8731998 G T PIK3R6 Missense_Mutation p.P400H 0.19 tolerated(0.06) probably_damaging(0.986) TCGA-93-7347-01 18 43437840 43437840 G A EPG5 Missense_Mutation p.R2474W 0.17 deleterious(0) probably_damaging(0.988) TCGA-93-7347-01 18 55996235 55996235 C T NEDD4L Missense_Mutation p.S230F 0.07 tolerated(0.07) benign(0.049) TCGA-93-7347-01 18 72997576 72997576 G T TSHZ1 Missense_Mutation p.A27S 0.12 tolerated(0.05) probably_damaging(0.982) TCGA-93-7347-01 18 8384599 8384599 A T PTPRM Missense_Mutation p.H1320L 0.17 tolerated(0.07) benign(0.005) TCGA-93-7347-01 18 9914270 9914270 G T VAPA Missense_Mutation p.G6V 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.744) TCGA-93-7347-01 19 12867072 12867072 C T BEST2 Missense_Mutation p.R356W 0.05 tolerated(0.19) possibly_damaging(0.582) TCGA-93-7347-01 19 15769110 15769110 C T CYP4F3 Silent p.C384C 0.11 TCGA-93-7347-01 19 16612013 16612013 G T C19orf44 Missense_Mutation p.G137V 0.18 tolerated(0.11) benign(0.394) TCGA-93-7347-01 19 19638969 19638969 C T NDUFA13 3'UTR 0.20 TCGA-93-7347-01 19 19681537 19681537 C A PBX4 Missense_Mutation p.G100V 0.13 deleterious(0.03) possibly_damaging(0.513) TCGA-93-7347-01 19 22585642 22585642 C A ZNF98 Nonsense_Mutation p.G68* 0.13 TCGA-93-7347-01 19 36237385 36237385 C G PSENEN Missense_Mutation p.L43V 0.10 tolerated(0.5) benign(0.008) TCGA-93-7347-01 19 39034259 39034259 G T RYR1 Missense_Mutation p.V3956L 0.13 benign(0.001) TCGA-93-7347-01 19 52941209 52941209 G T ZNF534 Missense_Mutation p.D179Y 0.11 deleterious(0) probably_damaging(0.965) TCGA-93-7347-01 19 54483188 54483188 C A CACNG8 Nonsense_Mutation p.C145* 0.29 TCGA-93-7347-01 19 54760503 54760503 G T LILRB5 Silent p.A68A 0.15 TCGA-93-7347-01 19 9087070 9087070 G T MUC16 Missense_Mutation p.S1582Y 0.09 unknown(0) TCGA-93-7347-01 1 151681551 151681551 A T CELF3 Missense_Mutation p.C137S 0.13 deleterious(0) probably_damaging(0.921) TCGA-93-7347-01 1 160458940 160458940 C - SLAMF6 Frame_Shift_Del p.E273Sfs*72 0.10 TCGA-93-7347-01 1 167032927 167032927 C A GPA33 Missense_Mutation p.G155W 0.12 deleterious(0) probably_damaging(1) TCGA-93-7347-01 1 175335167 175335167 T G TNR Missense_Mutation p.T721P 0.07 deleterious(0.02) probably_damaging(0.958) TCGA-93-7347-01 1 204009392 204009392 C A LINC00303 Splice_Site 0.22 TCGA-93-7347-01 1 236734872 236734872 G T HEATR1 Silent p.P1274P 0.05 TCGA-93-7347-01 1 237813214 237813214 A T RYR2 Missense_Mutation p.N2517I 0.18 probably_damaging(0.999) TCGA-93-7347-01 1 244580948 244580948 A G ADSS Missense_Mutation p.M351T 0.12 tolerated(0.06) benign(0.247) TCGA-93-7347-01 1 28863368 28863368 G T RCC1 Silent p.S380S 0.15 TCGA-93-7347-01 1 34003151 34003151 G A CSMD2 Silent p.F3086F 0.06 TCGA-93-7347-01 21 38459593 38459593 G T TTC3 Silent p.A12A 0.14 TCGA-93-7347-01 22 23090380 23090380 C T IGLV3-16 Silent p.L107L 0.23 TCGA-93-7347-01 22 29754807 29754807 C A AP1B1 Missense_Mutation p.V145L 0.14 deleterious(0.03) probably_damaging(0.948) TCGA-93-7347-01 22 46780486 46780486 G A CELSR1 Silent p.S2279S 0.24 TCGA-93-7347-01 2 101706815 101706815 C G TBC1D8 Missense_Mutation p.G47R 0.12 deleterious(0) probably_damaging(1) TCGA-93-7347-01 2 141299476 141299476 C T LRP1B Nonsense_Mutation p.W2420* 0.16 TCGA-93-7347-01 2 167262236 167262236 C A SCN7A Missense_Mutation p.A1635S 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-93-7347-01 2 207621963 207621963 G C MDH1B Missense_Mutation p.Q90E 0.18 deleterious(0.04) benign(0.042) TCGA-93-7347-01 2 220473352 220473352 G C STK11IP Missense_Mutation p.G562R 0.09 deleterious(0.03) possibly_damaging(0.859) TCGA-93-7347-01 2 233146 233146 G C SH3YL1 Missense_Mutation p.S163C 0.15 deleterious(0) probably_damaging(0.992) TCGA-93-7347-01 2 233995347 233995347 G A INPP5D Silent p.K218K 0.10 TCGA-93-7347-01 2 241465684 241465684 C A ANKMY1 Missense_Mutation p.A289S 0.07 tolerated(0.09) possibly_damaging(0.777) TCGA-93-7347-01 2 241465685 241465685 C A ANKMY1 Silent p.V288V 0.07 TCGA-93-7347-01 2 28840597 28840597 T G PLB1 Missense_Mutation p.W1067G 0.21 deleterious(0) probably_damaging(0.963) TCGA-93-7347-01 2 85981354 85981354 C T ATOH8 Silent p.T14T 0.22 TCGA-93-7347-01 3 121383793 121383793 T G GOLGB1 Missense_Mutation p.T3219P 0.10 benign(0.012) TCGA-93-7347-01 3 123010222 123010222 G T ADCY5 Missense_Mutation p.A1022D 0.11 deleterious(0.03) probably_damaging(0.998) TCGA-93-7347-01 3 159713204 159713204 A G IL12A Missense_Mutation p.N207S 0.09 tolerated(0.65) benign(0.004) TCGA-93-7347-01 3 161221658 161221658 C A OTOL1 Silent p.V454V 0.07 TCGA-93-7347-01 3 39432934 39432934 C T SLC25A38 Silent p.S93S 0.12 TCGA-93-7347-01 3 42201878 42201878 G A TRAK1 Intron 0.06 TCGA-93-7347-01 3 4558210 4558210 G T ITPR1 Missense_Mutation p.G12V 0.08 deleterious(0) probably_damaging(1) TCGA-93-7347-01 3 71804119 71804119 C T GPR27 Missense_Mutation p.R307W 0.09 deleterious(0) probably_damaging(0.999) TCGA-93-7347-01 3 95374412 95374412 G T MTHFD2P1 RNA 0.15 TCGA-93-7347-01 4 126372962 126372962 A T FAT4 Silent p.T3597T 0.17 TCGA-93-7347-01 4 62800699 62800699 C G LPHN3 Missense_Mutation p.L684V 0.06 tolerated(0.23) possibly_damaging(0.831) TCGA-93-7347-01 4 74306346 74306346 C A AFP Missense_Mutation p.H100N 0.05 deleterious(0.01) possibly_damaging(0.805) TCGA-93-7347-01 5 137622942 137622942 C A CDC25C Silent p.L314L 0.08 TCGA-93-7347-01 5 156589684 156589684 G T FAM71B Missense_Mutation p.A531D 0.22 tolerated(0.07) benign(0.055) TCGA-93-7347-01 5 171520788 171520788 T G STK10 Silent p.P394P 0.12 TCGA-93-7347-01 5 38942422 38942423 - T RICTOR Frame_Shift_Ins p.T1704Nfs*4 0.09 TCGA-93-7347-01 5 41201800 41201801 - A C6 Frame_Shift_Ins p.K54* 0.20 TCGA-93-7347-01 5 491958 491958 G A SLC9A3 Missense_Mutation p.A147V 0.24 deleterious(0) probably_damaging(0.976) TCGA-93-7347-01 5 57750850 57750850 T C PLK2 Splice_Site p.X586_splice 0.13 TCGA-93-7347-01 6 106967686 106967686 C T AIM1 Missense_Mutation p.S460L 0.08 tolerated_low_confidence(0.05) benign(0.03) TCGA-93-7347-01 6 128643394 128643394 C A PTPRK Silent p.L95L 0.08 TCGA-93-7347-01 6 2948601 2948601 G A SERPINB6 Silent p.P354P 0.07 TCGA-93-7347-01 6 32122466 32122466 A G PPT2 Missense_Mutation p.H38R 0.08 tolerated(0.73) probably_damaging(0.958) TCGA-93-7347-01 6 34499392 34499392 C G PACSIN1 Missense_Mutation p.D351E 0.07 tolerated(0.81) benign(0.015) TCGA-93-7347-01 7 103202036 103202036 C G RELN Missense_Mutation p.E1824D 0.12 tolerated(0.16) probably_damaging(0.989) TCGA-93-7347-01 7 139416071 139416071 C A HIPK2 Missense_Mutation p.A255S 0.18 deleterious(0) probably_damaging(0.928) TCGA-93-7347-01 7 148963690 148963690 G T ZNF783 Missense_Mutation p.A97S 0.12 deleterious(0.02) probably_damaging(0.962) TCGA-93-7347-01 7 16348241 16348241 A G ISPD Silent p.Y232Y 0.19 TCGA-93-7347-01 7 21469643 21469643 C T SP4 Missense_Mutation p.A287V 0.06 tolerated(0.23) possibly_damaging(0.483) TCGA-93-7347-01 7 43548501 43548501 G T HECW1 Intron 0.10 TCGA-93-7347-01 7 43917298 43917298 C A URGCP Silent p.T588T 0.14 TCGA-93-7347-01 7 93055880 93055880 G A CALCR Nonsense_Mutation p.Q439* 0.24 TCGA-93-7347-01 8 144993590 144993590 C A PLEC Missense_Mutation p.A3604S 0.11 probably_damaging(0.999) TCGA-93-7347-01 8 145749504 145749504 C T LRRC24 Silent p.L199L 0.27 TCGA-93-7347-01 8 20107693 20107693 C A LZTS1 Missense_Mutation p.G444V 0.16 tolerated(0.05) benign(0.219) TCGA-93-7347-01 8 73848226 73848226 C A KCNB2 Silent p.L212L 0.25 TCGA-93-7347-01 9 119567928 119567928 G T ASTN2 Silent p.V742V 0.17 TCGA-93-7347-01 9 135210025 135210025 T A SETX Missense_Mutation p.I270L 0.14 deleterious(0.02) probably_damaging(0.995) TCGA-93-7347-01 9 21816764 21816765 - T MTAP Frame_Shift_Ins p.A59Cfs*53 0.18 TCGA-93-7347-01 9 90343602 90343602 G C CTSL Missense_Mutation p.V167L 0.04 tolerated(0.12) benign(0.099) TCGA-93-7347-01 X 100646034 100646034 G A RPL36A Missense_Mutation p.M37I 0.08 tolerated(0.11) possibly_damaging(0.888) TCGA-93-7347-01 X 109764800 109764800 G T TDGF1P3 RNA 0.12 TCGA-93-7347-01 X 118238956 118238956 T G KIAA1210 Missense_Mutation p.Q356P 0.14 deleterious(0.03) benign(0.075) TCGA-93-7347-01 X 12734352 12734352 C A FRMPD4 Missense_Mutation p.H592N 0.09 tolerated_low_confidence(0.13) benign(0.044) TCGA-93-7347-01 X 131573688 131573688 C G MBNL3 5'UTR 0.16 TCGA-93-7347-01 X 148037640 148037640 C A AFF2 Missense_Mutation p.P689T 0.13 tolerated(0.84) benign(0.004) TCGA-93-7347-01 X 152960251 152960251 G T SLC6A8 Missense_Mutation p.E558D 0.15 tolerated(0.59) benign(0.186) TCGA-93-7347-01 X 153062934 153062934 G T SSR4 Missense_Mutation p.V70F 0.12 deleterious(0) possibly_damaging(0.613) TCGA-93-7347-01 X 27999372 27999372 G C DCAF8L1 Missense_Mutation p.S27C 0.20 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-93-7347-01 X 34148985 34148985 G T FAM47A Missense_Mutation p.P471T 0.13 tolerated(0.12) probably_damaging(0.991) TCGA-93-7347-01 X 46951083 46951083 G A RGN Missense_Mutation p.R190H 0.16 deleterious(0.04) probably_damaging(0.953) TCGA-93-7347-01 X 48978831 48978831 C A GPKOW Missense_Mutation p.D125Y 0.13 deleterious(0) possibly_damaging(0.855) TCGA-93-7347-01 X 55170197 55170197 C T FAM104B 3'Flank 0.11 TCGA-93-7347-01 X 73062976 73062976 C A XIST RNA 0.15 TCGA-93-7348-01 10 105350046 105350046 C T NEURL1 Missense_Mutation p.R548C 0.15 deleterious(0) probably_damaging(0.977) TCGA-93-7348-01 10 106121912 106121912 A T CCDC147 Silent p.S141S 0.27 TCGA-93-7348-01 10 135125252 135125252 G T ZNF511 Missense_Mutation p.G196V 0.14 tolerated(0.55) benign(0.108) TCGA-93-7348-01 10 15256140 15256140 C G FAM171A1 Missense_Mutation p.D483H 0.14 deleterious(0.04) possibly_damaging(0.562) TCGA-93-7348-01 10 35842027 35842027 C T CCNY Silent p.I220I 0.09 TCGA-93-7348-01 11 123676438 123676438 G A OR6M1 Missense_Mutation p.S207F 0.06 deleterious(0) probably_damaging(0.998) TCGA-93-7348-01 11 21592368 21592368 T C NELL1 Missense_Mutation p.L680P 0.15 deleterious(0.03) probably_damaging(0.954) TCGA-93-7348-01 11 2189733 2189733 C A TH Missense_Mutation p.A190S 0.09 tolerated(0.73) benign(0.021) TCGA-93-7348-01 11 36596428 36596428 C A RAG1 Missense_Mutation p.P525H 0.20 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-93-7348-01 11 44289169 44289169 A G ALX4 Missense_Mutation p.W261R 0.22 deleterious(0) probably_damaging(0.998) TCGA-93-7348-01 11 47712126 47712126 G A AGBL2 Missense_Mutation p.T378M 0.18 deleterious(0) probably_damaging(0.996) TCGA-93-7348-01 11 51412273 51412273 C A OR4A5 Silent p.L41L 0.27 TCGA-93-7348-01 11 55999948 55999948 G T OR5T2 Silent p.L238L 0.14 TCGA-93-7348-01 11 5758467 5758467 G A OR56B1 Missense_Mutation p.E241K 0.19 tolerated(0.16) benign(0.311) TCGA-93-7348-01 11 59807771 59807771 G T OOSP2 5'UTR 0.20 TCGA-93-7348-01 11 62554927 62554927 C T TMEM179B Silent p.R8R 0.14 TCGA-93-7348-01 11 63990560 63990560 A C FERMT3 Missense_Mutation p.N575H 0.18 tolerated(0.43) benign(0.009) TCGA-93-7348-01 11 77918630 77918630 C T USP35 Silent p.T482T 0.13 TCGA-93-7348-01 11 92615964 92615964 G A FAT3 Silent p.V4114V 0.28 TCGA-93-7348-01 12 110783811 110783811 C T ATP2A2 Missense_Mutation p.S916F 0.15 deleterious(0) probably_damaging(0.999) TCGA-93-7348-01 12 26810659 26810659 C A ITPR2 Nonsense_Mutation p.E725* 0.14 TCGA-93-7348-01 12 32908428 32908428 C G YARS2 Missense_Mutation p.K127N 0.11 tolerated(0.1) benign(0.08) TCGA-93-7348-01 12 43944882 43944882 C T ADAMTS20 Missense_Mutation p.A95T 0.08 deleterious(0.03) possibly_damaging(0.599) TCGA-93-7348-01 12 52845437 52845437 C A KRT6B Missense_Mutation p.Q142H 0.07 deleterious(0) benign(0.274) TCGA-93-7348-01 12 54801969 54801969 C A ITGA5 Nonsense_Mutation p.E248* 0.23 TCGA-93-7348-01 13 100511246 100511246 G T CLYBL Silent p.R127R 0.23 TCGA-93-7348-01 13 21205212 21205212 G T IFT88 Missense_Mutation p.A462S 0.13 tolerated(0.05) benign(0.41) TCGA-93-7348-01 13 29600083 29600083 A T MTUS2 Silent p.P426P 0.18 TCGA-93-7348-01 13 46632454 46632454 G T CPB2 Missense_Mutation p.P287T 0.06 deleterious(0.03) probably_damaging(1) TCGA-93-7348-01 13 80911047 80911048 - TTT SPRY2 Nonsense_Mutation p.C265delins* 0.18 TCGA-93-7348-01 13 96416145 96416145 A G DNAJC3 Missense_Mutation p.D338G 0.12 tolerated(0.06) benign(0.006) TCGA-93-7348-01 14 101521021 101521021 G A MIR134 RNA 0.16 TCGA-93-7348-01 14 68264919 68264919 G A ZFYVE26 Missense_Mutation p.A687V 0.15 tolerated(0.07) possibly_damaging(0.691) TCGA-93-7348-01 14 88857734 88857734 C T SPATA7 Missense_Mutation p.T10I 0.15 deleterious(0.01) possibly_damaging(0.805) TCGA-93-7348-01 15 55613537 55613537 A T PIGB Silent p.A122A 0.35 TCGA-93-7348-01 15 91548985 91548985 C T VPS33B Missense_Mutation p.M323I 0.09 tolerated(0.06) possibly_damaging(0.874) TCGA-93-7348-01 16 19514835 19514835 T C GDE1 Missense_Mutation p.Y318C 0.12 deleterious(0) probably_damaging(0.998) TCGA-93-7348-01 16 20430747 20430747 G A ACSM5 Missense_Mutation p.E205K 0.25 tolerated(0.13) benign(0.042) TCGA-93-7348-01 16 31498840 31498840 T C SLC5A2 Intron 0.08 TCGA-93-7348-01 17 10537453 10537453 A G MYH3 Missense_Mutation p.L1468P 0.04 deleterious(0.01) possibly_damaging(0.697) TCGA-93-7348-01 17 46607756 46607756 C G HOXB1 Missense_Mutation p.E171Q 0.15 tolerated(0.17) possibly_damaging(0.46) TCGA-93-7348-01 17 48051138 48051138 G A DLX4 Missense_Mutation p.G185E 0.23 tolerated(0.26) benign(0.011) TCGA-93-7348-01 18 31803075 31803075 G T NOL4 Missense_Mutation p.T48K 0.11 tolerated(0.07) probably_damaging(0.996) TCGA-93-7348-01 18 77895840 77895840 C G ADNP2 Missense_Mutation p.H848Q 0.14 deleterious(0.04) possibly_damaging(0.653) TCGA-93-7348-01 19 3736270 3736270 G A TJP3 Missense_Mutation p.G421D 0.09 tolerated(0.4) benign(0.278) TCGA-93-7348-01 19 38983277 38983277 G A RYR1 Splice_Site p.X2092_splice 0.21 TCGA-93-7348-01 19 39871697 39871697 G A SAMD4B Missense_Mutation p.R639H 0.06 deleterious(0.02) benign(0.176) TCGA-93-7348-01 19 43523108 43523108 C G PSG11 Missense_Mutation p.D175H 0.07 deleterious(0.03) probably_damaging(0.921) TCGA-93-7348-01 19 51228604 51228604 C T CLEC11A Silent p.S284S 0.27 TCGA-93-7348-01 19 53854728 53854728 G T ZNF845 Missense_Mutation p.G267V 0.10 deleterious(0.02) probably_damaging(0.995) TCGA-93-7348-01 19 53989968 53989968 A G ZNF813 Missense_Mutation p.Y33C 0.12 deleterious(0) possibly_damaging(0.744) TCGA-93-7348-01 1 10197176 10197176 T G UBE4B Missense_Mutation p.F759C 0.09 deleterious(0) probably_damaging(0.999) TCGA-93-7348-01 1 103355112 103355112 G A COL11A1 Missense_Mutation p.P1455S 0.06 unknown(0) TCGA-93-7348-01 1 107937934 107937934 G A NTNG1 Missense_Mutation p.G349D 0.19 deleterious(0) probably_damaging(0.943) TCGA-93-7348-01 1 145534172 145534172 G A ITGA10 Silent p.L559L 0.06 TCGA-93-7348-01 1 152282874 152282874 G C FLG Missense_Mutation p.S1496R 0.31 benign(0.307) TCGA-93-7348-01 1 204953227 204953227 G T NFASC Intron 0.07 TCGA-93-7348-01 1 216251437 216251437 C G USH2A Missense_Mutation p.E1856Q 0.06 benign(0.028) TCGA-93-7348-01 1 222715378 222715378 C A HHIPL2 Missense_Mutation p.G365V 0.27 deleterious(0) probably_damaging(0.991) TCGA-93-7348-01 1 246810486 246810486 A G CNST Missense_Mutation p.H328R 0.18 tolerated(0.25) benign(0.003) TCGA-93-7348-01 1 39877931 39877931 C G KIAA0754 Nonsense_Mutation p.S529* 0.05 TCGA-93-7348-01 20 2293605 2293605 G T TGM3 Missense_Mutation p.R201L 0.12 tolerated(0.29) possibly_damaging(0.712) TCGA-93-7348-01 20 43034755 43034755 C T HNF4A Missense_Mutation p.A58V 0.22 tolerated(0.24) benign(0.006) TCGA-93-7348-01 20 43681811 43681811 G A STK4 Intron 0.09 TCGA-93-7348-01 20 50407055 50407055 G A SALL4 Missense_Mutation p.T656M 0.07 deleterious(0) probably_damaging(0.998) TCGA-93-7348-01 20 57766574 57766574 C T ZNF831 Missense_Mutation p.T167M 0.05 deleterious(0) probably_damaging(1) TCGA-93-7348-01 20 61513083 61513083 C T DIDO1 Missense_Mutation p.E1409K 0.10 benign(0.114) TCGA-93-7348-01 20 9546635 9546635 C T PAK7 Missense_Mutation p.V463I 0.04 deleterious(0) probably_damaging(0.96) TCGA-93-7348-01 22 37707058 37707058 T A CYTH4 Missense_Mutation p.W280R 0.08 deleterious(0) probably_damaging(0.997) TCGA-93-7348-01 2 100019435 100019435 T G REV1 Missense_Mutation p.T1101P 0.10 tolerated(0.33) benign(0.001) TCGA-93-7348-01 2 109292448 109292448 C T LIMS1 Silent p.R265R 0.16 TCGA-93-7348-01 2 130832520 130832520 A T POTEF Missense_Mutation p.L842Q 0.08 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-93-7348-01 2 17699682 17699682 T A RAD51AP2 Translation_Start_Site p.M1? 0.13 tolerated(0.08) benign(0.005) TCGA-93-7348-01 2 225635033 225635033 G C DOCK10 Missense_Mutation p.D2113E 0.24 tolerated(0.84) benign(0.023) TCGA-93-7348-01 2 226446708 226446708 C A NYAP2 Missense_Mutation p.P192H 0.16 deleterious(0) probably_damaging(1) TCGA-93-7348-01 2 234669637 234669637 C T UGT1A8 Intron 0.05 TCGA-93-7348-01 2 234871956 234871956 C G TRPM8 Missense_Mutation p.Q562E 0.06 deleterious(0.03) possibly_damaging(0.459) TCGA-93-7348-01 2 37594376 37594376 C G QPCT Missense_Mutation p.T183S 0.13 tolerated(0.66) benign(0.103) TCGA-93-7348-01 2 55646180 55646180 C G CCDC88A Missense_Mutation p.Q12H 0.24 tolerated(0.13) benign(0.012) TCGA-93-7348-01 2 74834325 74834325 C T M1AP Missense_Mutation p.G151E 0.08 deleterious(0) possibly_damaging(0.804) TCGA-93-7348-01 2 89278494 89278494 G T IGKV3-7 Missense_Mutation p.P4T 0.16 deleterious(0.05) possibly_damaging(0.793) TCGA-93-7348-01 3 123337498 123337498 A T MYLK Missense_Mutation p.C1830S 0.10 deleterious(0) probably_damaging(0.998) TCGA-93-7348-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.25 deleterious(0.04) probably_damaging(0.96) TCGA-93-7348-01 3 195515885 195515885 C T MUC4 Missense_Mutation p.A856T 0.12 unknown(0) TCGA-93-7348-01 3 19575248 19575248 C T KCNH8 Missense_Mutation p.S994L 0.14 deleterious_low_confidence(0.01) benign(0.05) TCGA-93-7348-01 4 108578069 108578069 A T PAPSS1 Missense_Mutation p.F293Y 0.25 deleterious(0.01) possibly_damaging(0.669) TCGA-93-7348-01 4 75673268 75673268 C G BTC Missense_Mutation p.E174Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-93-7348-01 4 91230499 91230499 T A CCSER1 Missense_Mutation p.L355Q 0.22 tolerated_low_confidence(0.08) possibly_damaging(0.55) TCGA-93-7348-01 5 128301723 128301723 T C SLC27A6 5'UTR 0.36 TCGA-93-7348-01 5 140249937 140249937 G A PCDHA11 Missense_Mutation p.V417M 0.06 tolerated_low_confidence(0.1) possibly_damaging(0.563) TCGA-93-7348-01 5 176301080 176301080 G T UNC5A Missense_Mutation p.G333V 0.17 deleterious(0) probably_damaging(0.953) TCGA-93-7348-01 5 176304986 176304986 G A UNC5A Missense_Mutation p.G576D 0.28 deleterious(0) probably_damaging(1) TCGA-93-7348-01 5 177571094 177571094 C G RMND5B Missense_Mutation p.R227G 0.07 tolerated(0.39) benign(0) TCGA-93-7348-01 5 33964049 33964049 C A SLC45A2 Missense_Mutation p.G212V 0.23 deleterious(0.02) probably_damaging(0.976) TCGA-93-7348-01 5 64960080 64960080 C A TRAPPC13 Missense_Mutation p.L340M 0.16 deleterious(0) probably_damaging(0.998) TCGA-93-7348-01 6 147581750 147581750 G T STXBP5 Splice_Site p.X144_splice 0.17 TCGA-93-7348-01 6 34029800 34029800 C T GRM4 Missense_Mutation p.V248M 0.10 deleterious(0) possibly_damaging(0.563) TCGA-93-7348-01 6 55196548 55196548 C A GFRAL Missense_Mutation p.Q20K 0.08 deleterious(0.03) benign(0.341) TCGA-93-7348-01 6 66204723 66204723 C A EYS Missense_Mutation p.W194L 0.21 tolerated(0.62) possibly_damaging(0.888) TCGA-93-7348-01 7 116412044 116412044 G A MET Splice_Site p.X1028_splice 0.25 TCGA-93-7348-01 7 141672764 141672764 G T TAS2R38 Missense_Mutation p.H242Q 0.24 deleterious(0.03) possibly_damaging(0.554) TCGA-93-7348-01 7 142180780 142180780 G T TRBV6-5 Missense_Mutation p.P27T 0.21 deleterious(0.02) probably_damaging(1) TCGA-93-7348-01 7 142364702 142364702 A G TRBV24-1 Missense_Mutation p.S113G 0.16 deleterious(0.01) possibly_damaging(0.844) TCGA-93-7348-01 7 143657663 143657663 G T OR2F1 Missense_Mutation p.M200I 0.20 tolerated(0.06) benign(0.005) TCGA-93-7348-01 7 31862712 31862712 C T PDE1C Silent p.E579E 0.08 TCGA-93-7348-01 7 34125511 34125511 G T BMPER Missense_Mutation p.D518Y 0.19 deleterious(0.01) possibly_damaging(0.826) TCGA-93-7348-01 7 44298523 44298523 G A CAMK2B Missense_Mutation p.R75C 0.38 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-93-7348-01 7 72658037 72658037 A G GTF2IRD2P1 RNA 0.10 TCGA-93-7348-01 8 106814552 106814552 G T ZFPM2 Nonsense_Mutation p.E748* 0.11 TCGA-93-7348-01 8 126445584 126445584 A T TRIB1 Missense_Mutation p.D129V 0.11 deleterious(0.03) benign(0.116) TCGA-93-7348-01 8 135817175 135817175 A G MIR30D RNA 0.05 TCGA-93-7348-01 8 30938527 30938527 A T WRN Silent p.V328V 0.14 TCGA-93-7348-01 8 6793542 6793542 T A DEFA4 Nonstop_Mutation p.*98Yext*30 0.12 TCGA-93-7348-01 8 69021837 69021837 T C PREX2 Missense_Mutation p.M1042T 0.23 tolerated(0.33) benign(0) TCGA-93-7348-01 8 69351791 69351791 G A C8orf34 Missense_Mutation p.D129N 0.12 tolerated(0.18) benign(0.036) TCGA-93-7348-01 9 101787221 101787221 T A COL15A1 Silent p.V640V 0.18 TCGA-93-7348-01 9 103338911 103338911 A T TMEFF1 3'UTR 0.18 TCGA-93-7348-01 9 107618283 107618283 G A ABCA1 Intron 0.16 TCGA-93-7348-01 9 125562995 125562995 G A OR1K1 Silent p.L198L 0.14 TCGA-93-7348-01 9 138391685 138391685 A C C9orf116 Missense_Mutation p.C5G 0.13 tolerated(0.37) benign(0) TCGA-93-7348-01 X 111195485 111195485 G T TRPC5 Missense_Mutation p.A55D 0.07 deleterious(0.01) probably_damaging(0.993) TCGA-93-7348-01 X 141290803 141290803 G T MAGEC2 Missense_Mutation p.T324N 0.20 deleterious(0.02) possibly_damaging(0.489) TCGA-93-7348-01 X 141293066 141293066 G T MAGEC2 5'UTR 0.25 TCGA-93-7348-01 X 149638205 149638205 G T MAMLD1 Silent p.A95A 0.12 TCGA-93-7348-01 X 151303721 151303721 T C MAGEA10 Silent p.P124P 0.11 TCGA-93-7348-01 X 151815621 151815621 C A GABRQ Nonsense_Mutation p.Y173* 0.09 TCGA-93-7348-01 X 151900386 151900386 C T MAGEA12 Missense_Mutation p.V139I 0.08 tolerated(0.16) possibly_damaging(0.598) TCGA-93-7348-01 X 1746614 1746614 C T ASMT Silent p.Y131Y 0.08 TCGA-93-7348-01 X 38020261 38020261 C A SRPX Missense_Mutation p.D234Y 0.13 tolerated(0.06) benign(0.052) TCGA-93-7348-01 X 50213490 50213490 G T DGKK RNA 0.08 TCGA-93-7348-01 X 50213491 50213491 G T DGKK RNA 0.08 TCGA-93-7348-01 X 71424945 71424945 A G ERCC6L Silent p.V1224V 0.08 TCGA-93-7348-01 X 8759376 8759376 A T FAM9A Missense_Mutation p.S325R 0.13 deleterious_low_confidence(0.01) unknown(0) TCGA-93-7348-01 X 89177188 89177188 G T TGIF2LX Missense_Mutation p.R35I 0.17 deleterious(0.03) benign(0.352) TCGA-93-8067-01 10 1065765 1065765 C G IDI2 Missense_Mutation p.E126Q 0.27 deleterious(0.05) benign(0.005) TCGA-93-8067-01 10 113915700 113915700 G A GPAM Missense_Mutation p.P745S 0.25 deleterious(0.01) possibly_damaging(0.492) TCGA-93-8067-01 10 115603979 115603979 G A DCLRE1A Silent p.L801L 0.28 TCGA-93-8067-01 10 115612709 115612709 G C DCLRE1A Missense_Mutation p.S78C 0.23 deleterious(0.02) benign(0.059) TCGA-93-8067-01 10 115982430 115982430 G C TDRD1 Missense_Mutation p.R992T 0.21 tolerated(0.06) probably_damaging(0.943) TCGA-93-8067-01 10 122668120 122668120 C T WDR11 Silent p.L1190L 0.25 TCGA-93-8067-01 10 15726098 15726098 G C ITGA8 Missense_Mutation p.T158S 0.19 deleterious(0.02) benign(0.333) TCGA-93-8067-01 10 30653968 30653968 C G AL161651.1 3'Flank 0.08 TCGA-93-8067-01 10 30918603 30918603 G A LYZL2 Missense_Mutation p.P11L 0.08 deleterious_low_confidence(0) benign(0.008) TCGA-93-8067-01 10 33496558 33496558 C T NRP1 Silent p.E567E 0.18 TCGA-93-8067-01 10 44876268 44876268 C T CXCL12 Missense_Mutation p.R41K 0.20 tolerated(0.39) benign(0.018) TCGA-93-8067-01 10 75860836 75860836 C T VCL Missense_Mutation p.A668V 0.15 tolerated(0.96) possibly_damaging(0.478) TCGA-93-8067-01 10 7683893 7683893 G T ITIH5 Missense_Mutation p.T99N 0.17 deleterious(0) probably_damaging(0.98) TCGA-93-8067-01 10 95400215 95400215 C G PDE6C Silent p.T546T 0.23 TCGA-93-8067-01 10 95721112 95721112 C G PIPSL RNA 0.23 TCGA-93-8067-01 10 98380186 98380186 C T PIK3AP1 Missense_Mutation p.V622M 0.21 tolerated(0.1) probably_damaging(1) TCGA-93-8067-01 10 98711923 98711923 C A LCOR Missense_Mutation p.S101Y 0.41 deleterious(0.01) probably_damaging(0.962) TCGA-93-8067-01 11 103086512 103086512 A G DYNC2H1 Silent p.G2919G 0.20 TCGA-93-8067-01 11 103907469 103907469 G - DDI1 5'UTR 0.25 TCGA-93-8067-01 11 10552261 10552261 G A RNF141 Missense_Mutation p.L61F 0.10 deleterious(0.02) possibly_damaging(0.572) TCGA-93-8067-01 11 105880224 105880224 G A MSANTD4 3'UTR 0.20 TCGA-93-8067-01 11 1079700 1079700 C T MUC2 Missense_Mutation p.S306L 0.27 probably_damaging(1) TCGA-93-8067-01 11 111754494 111754494 G T C11orf1 Splice_Site p.X115_splice 0.32 TCGA-93-8067-01 11 11977639 11977639 C T USP47 Missense_Mutation p.R1261C 0.22 deleterious(0.03) possibly_damaging(0.721) TCGA-93-8067-01 11 123601559 123601559 C A ZNF202 Missense_Mutation p.W13L 0.37 tolerated(0.23) probably_damaging(0.997) TCGA-93-8067-01 11 125351490 125351490 G C FEZ1 Silent p.L117L 0.29 TCGA-93-8067-01 11 129753970 129753970 G C NFRKB Missense_Mutation p.Q296E 0.32 tolerated(0.12) unknown(0) TCGA-93-8067-01 11 14808039 14808039 G T PDE3B Missense_Mutation p.M362I 0.23 tolerated(0.06) benign(0.146) TCGA-93-8067-01 11 16119177 16119177 C T SOX6 Missense_Mutation p.G319E 0.15 deleterious(0) probably_damaging(1) TCGA-93-8067-01 11 17351722 17351722 G A NUCB2 Missense_Mutation p.E351K 0.29 deleterious(0.04) benign(0.241) TCGA-93-8067-01 11 19967961 19967961 G T NAV2 Missense_Mutation p.A744S 0.35 tolerated(0.46) benign(0.129) TCGA-93-8067-01 11 22225380 22225380 C T ANO5 Missense_Mutation p.S24F 0.16 tolerated(0.14) benign(0) TCGA-93-8067-01 11 22647099 22647099 G C AC103801.2 Missense_Mutation p.E15Q 0.15 unknown(0) TCGA-93-8067-01 11 26586790 26586790 C G MUC15 Missense_Mutation p.E233Q 0.15 tolerated(0.07) possibly_damaging(0.859) TCGA-93-8067-01 11 30944122 30944122 G T DCDC1 Missense_Mutation p.Q1021K 0.16 tolerated(0.06) benign(0.092) TCGA-93-8067-01 11 3688461 3688461 C A CHRNA10 Splice_Site p.X299_splice 0.40 TCGA-93-8067-01 11 407817 407817 C T SIGIRR Missense_Mutation p.D161N 0.23 deleterious(0.01) probably_damaging(0.965) TCGA-93-8067-01 11 43427106 43427106 G A TTC17 Missense_Mutation p.E508K 0.18 tolerated(1) benign(0.001) TCGA-93-8067-01 11 45970444 45970444 C T PHF21A Silent p.R426R 0.10 TCGA-93-8067-01 11 47256828 47256828 C T DDB2 Silent p.F296F 0.15 TCGA-93-8067-01 11 47587364 47587364 G C PTPMT1 Intron 0.17 TCGA-93-8067-01 11 48347439 48347439 A T OR4C3 Missense_Mutation p.N316I 0.30 deleterious(0) probably_damaging(0.961) TCGA-93-8067-01 11 5068692 5068692 G C OR52J3 3'Flank 0.27 TCGA-93-8067-01 11 63585732 63585732 G A C11orf84 Missense_Mutation p.A168T 0.47 tolerated(0.15) benign(0.009) TCGA-93-8067-01 11 64037768 64037768 C T BAD Silent p.Q140Q 0.31 TCGA-93-8067-01 11 65397123 65397123 C G PCNXL3 Missense_Mutation p.S1378C 0.58 deleterious(0) probably_damaging(0.995) TCGA-93-8067-01 11 65793923 65793923 C G CATSPER1 5'UTR 0.07 TCGA-93-8067-01 11 65810468 65810468 G C GAL3ST3 Missense_Mutation p.A269G 0.45 tolerated(0.06) benign(0.439) TCGA-93-8067-01 11 67354069 67354069 G A GSTP1 3'UTR 0.17 TCGA-93-8067-01 11 68682452 68682452 G C IGHMBP2 Missense_Mutation p.Q291H 0.40 deleterious(0.03) possibly_damaging(0.811) TCGA-93-8067-01 12 102046919 102046919 C G MYBPC1 Missense_Mutation p.L529V 0.13 tolerated(0.29) probably_damaging(0.928) TCGA-93-8067-01 12 102064113 102064113 C G MYBPC1 Missense_Mutation p.R840G 0.21 tolerated(0.05) probably_damaging(0.999) TCGA-93-8067-01 12 104152938 104152938 C A STAB2 Missense_Mutation p.H2379N 0.09 deleterious(0) possibly_damaging(0.859) TCGA-93-8067-01 12 105593217 105593217 G C APPL2 Missense_Mutation p.S272C 0.05 tolerated(0.08) benign(0.428) TCGA-93-8067-01 12 108957910 108957910 G C ISCU Intron 0.10 TCGA-93-8067-01 12 109530601 109530601 A G ALKBH2 5'UTR 0.09 TCGA-93-8067-01 12 109698455 109698455 G C ACACB Missense_Mutation p.E2223Q 0.19 tolerated(0.06) possibly_damaging(0.601) TCGA-93-8067-01 12 111160362 111160362 C T PPP1CC Missense_Mutation p.R221K 0.22 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-93-8067-01 12 111745014 111745014 G A CUX2 Silent p.E354E 0.18 TCGA-93-8067-01 12 112608231 112608231 C T HECTD4 Silent p.V3840V 0.17 TCGA-93-8067-01 12 113379508 113379508 C T OAS3 Missense_Mutation p.S104L 0.11 tolerated(1) benign(0) TCGA-93-8067-01 12 113447035 113447035 G T OAS2 Missense_Mutation p.W680L 0.12 deleterious(0) probably_damaging(1) TCGA-93-8067-01 12 113812658 113812658 C G PLBD2 Missense_Mutation p.I235M 0.14 tolerated(0.11) benign(0.037) TCGA-93-8067-01 12 120612967 120612967 G C GCN1L1 Nonsense_Mutation p.S364* 0.13 TCGA-93-8067-01 12 121125205 121125205 G A MLEC Missense_Mutation p.V36M 0.24 tolerated(0.12) unknown(0) TCGA-93-8067-01 12 122757540 122757540 G A CLIP1 Missense_Mutation p.S1400L 0.23 tolerated(0.15) benign(0.063) TCGA-93-8067-01 12 124819806 124819806 C T NCOR2 Missense_Mutation p.E2096K 0.27 possibly_damaging(0.842) TCGA-93-8067-01 12 1919486 1919486 G A CACNA2D4 Silent p.I893I 0.21 TCGA-93-8067-01 12 20523043 20523043 G A PDE3A Silent p.L275L 0.08 TCGA-93-8067-01 12 22637707 22637707 G A C2CD5 Missense_Mutation p.P492S 0.14 deleterious(0.03) probably_damaging(0.961) TCGA-93-8067-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.21 deleterious(0) possibly_damaging(0.479) TCGA-93-8067-01 12 28122432 28122432 T G PTHLH 5'UTR 0.24 TCGA-93-8067-01 12 2974522 2974522 G A FOXM1 Missense_Mutation p.S340L 0.19 tolerated(0.07) benign(0.341) TCGA-93-8067-01 12 45796881 45796881 G A ANO6 Missense_Mutation p.E568K 0.17 deleterious(0) probably_damaging(0.988) TCGA-93-8067-01 12 46245204 46245204 C G ARID2 Missense_Mutation p.Q1100E 0.10 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-93-8067-01 12 4653036 4653036 G A RAD51AP1 Missense_Mutation p.E59K 0.19 tolerated(0.4) benign(0.363) TCGA-93-8067-01 12 4714109 4714109 C G DYRK4 Missense_Mutation p.R271G 0.07 deleterious(0) probably_damaging(1) TCGA-93-8067-01 12 48468561 48468561 C T SENP1 Missense_Mutation p.E190K 0.13 deleterious(0) benign(0.254) TCGA-93-8067-01 12 49217131 49217131 C G CACNB3 Nonsense_Mutation p.S17* 0.12 TCGA-93-8067-01 12 49420767 49420767 C A KMT2D Silent p.L4994L 0.10 TCGA-93-8067-01 12 50037093 50037093 G A PRPF40B Missense_Mutation p.E765K 0.18 tolerated_low_confidence(0.25) possibly_damaging(0.486) TCGA-93-8067-01 12 52966242 52966242 C T KRT74 Silent p.K227K 0.06 TCGA-93-8067-01 12 53186105 53186105 C A KRT3 Missense_Mutation p.S369I 0.42 deleterious(0) probably_damaging(0.988) TCGA-93-8067-01 12 56563387 56563387 C T SMARCC2 Missense_Mutation p.E850K 0.22 tolerated(0.06) benign(0.307) TCGA-93-8067-01 12 56664156 56664159 TTAT - COQ10A 3'UTR 0.24 TCGA-93-8067-01 12 58021515 58021515 C A B4GALNT1 Missense_Mutation p.V424F 0.11 deleterious(0.03) benign(0.36) TCGA-93-8067-01 12 64868016 64868016 G T TBK1 Missense_Mutation p.D183Y 0.23 deleterious(0) probably_damaging(1) TCGA-93-8067-01 12 6923321 6923321 G A CD4 Silent p.L76L 0.23 TCGA-93-8067-01 12 7014918 7014918 G A LRRC23 Missense_Mutation p.E41K 0.05 deleterious(0.01) possibly_damaging(0.573) TCGA-93-8067-01 12 71834018 71834018 C G LGR5 Missense_Mutation p.S53C 0.20 deleterious(0) probably_damaging(0.933) TCGA-93-8067-01 12 7521996 7521996 C G CD163L1 Missense_Mutation p.Q1332H 0.08 tolerated(0.57) benign(0.048) TCGA-93-8067-01 12 75804327 75804327 T G GLIPR1L2 Missense_Mutation p.I116M 0.41 deleterious(0) probably_damaging(0.931) TCGA-93-8067-01 12 78225213 78225213 G T NAV3 5'UTR 0.38 TCGA-93-8067-01 12 80214621 80214621 C G PPP1R12A Missense_Mutation p.K349N 0.11 tolerated(0.08) probably_damaging(0.996) TCGA-93-8067-01 12 80707383 80707383 C G OTOGL Nonsense_Mutation p.S1184* 0.15 TCGA-93-8067-01 12 86373411 86373411 C G MGAT4C Missense_Mutation p.D365H 0.06 deleterious(0.03) possibly_damaging(0.497) TCGA-93-8067-01 12 88589091 88589091 G A TMTC3 Missense_Mutation p.E804K 0.21 deleterious(0.01) possibly_damaging(0.851) TCGA-93-8067-01 12 89745932 89745932 C T DUSP6 5'UTR 0.12 TCGA-93-8067-01 12 94805587 94805587 G A CCDC41 Silent p.L70L 0.16 TCGA-93-8067-01 12 96389705 96389705 G C HAL 5'UTR 0.06 TCGA-93-8067-01 13 103288020 103288020 G A TPP2 Missense_Mutation p.E493K 0.27 deleterious(0.01) possibly_damaging(0.744) TCGA-93-8067-01 13 113212649 113212649 G C TUBGCP3 Missense_Mutation p.Q137E 0.22 deleterious(0.04) benign(0.304) TCGA-93-8067-01 13 29599190 29599190 G A MTUS2 Missense_Mutation p.D129N 0.16 tolerated(0.08) benign(0.011) TCGA-93-8067-01 13 31309752 31309752 G C ALOX5AP Missense_Mutation p.E4Q 0.12 tolerated_low_confidence(0.12) benign(0.14) TCGA-93-8067-01 13 33628216 33628216 C T KL Nonsense_Mutation p.Q378* 0.26 TCGA-93-8067-01 13 45533522 45533522 C T NUFIP1 Missense_Mutation p.D339N 0.18 deleterious(0.03) possibly_damaging(0.872) TCGA-93-8067-01 13 50050665 50050665 G C SETDB2 Missense_Mutation p.R132T 0.10 tolerated(0.17) benign(0.009) TCGA-93-8067-01 13 52439605 52439605 G T CCDC70 Missense_Mutation p.A31S 0.14 tolerated(0.76) benign(0.002) TCGA-93-8067-01 13 80107517 80107517 C G NDFIP2 Missense_Mutation p.L183V 0.16 deleterious(0) possibly_damaging(0.839) TCGA-93-8067-01 13 96705546 96705546 C G UGGT2 Silent p.T7T 0.15 TCGA-93-8067-01 14 102026643 102026643 G A DIO3 5'Flank 0.28 TCGA-93-8067-01 14 102486382 102486382 C A DYNC1H1 Silent p.L2832L 0.08 TCGA-93-8067-01 14 104263810 104263810 C T PPP1R13B Missense_Mutation p.E19K 0.23 deleterious(0) benign(0.26) TCGA-93-8067-01 14 105614685 105614685 C T JAG2 Nonsense_Mutation p.W704* 0.39 TCGA-93-8067-01 14 20295822 20295823 CC - OR4N2 Frame_Shift_Del p.S72Lfs*49 0.17 TCGA-93-8067-01 14 21499292 21499292 G T TPPP2 Nonsense_Mutation p.E99* 0.11 TCGA-93-8067-01 14 23871676 23871676 C T MYH6 Missense_Mutation p.E380K 0.22 deleterious(0) benign(0.027) TCGA-93-8067-01 14 23891511 23891511 C T MYH7 Silent p.E1041E 0.21 TCGA-93-8067-01 14 24653082 24653082 G C IPO4 Missense_Mutation p.S631C 0.25 deleterious(0.01) benign(0.345) TCGA-93-8067-01 14 25288390 25288390 G A STXBP6 Silent p.I154I 0.20 TCGA-93-8067-01 14 31641128 31641128 C G HECTD1 Missense_Mutation p.R424T 0.28 deleterious(0) possibly_damaging(0.908) TCGA-93-8067-01 14 39524487 39524487 G C SEC23A Missense_Mutation p.Q507E 0.16 tolerated(0.61) benign(0.007) TCGA-93-8067-01 14 42356450 42356450 C T LRFN5 Nonsense_Mutation p.Q208* 0.19 TCGA-93-8067-01 14 50088132 50088132 G T MGAT2 Missense_Mutation p.G49V 0.39 tolerated(0.3) benign(0.002) TCGA-93-8067-01 14 50100257 50100257 G A DNAAF2 Silent p.L537L 0.08 TCGA-93-8067-01 14 53619633 53619633 C T DDHD1 Missense_Mutation p.E62K 0.14 deleterious_low_confidence(0.01) benign(0.16) TCGA-93-8067-01 14 57675195 57675195 C G EXOC5 3'UTR 0.19 TCGA-93-8067-01 14 58604887 58604887 G C C14orf37 Missense_Mutation p.S397C 0.19 deleterious(0.01) possibly_damaging(0.843) TCGA-93-8067-01 14 58955482 58955482 C G KIAA0586 Nonsense_Mutation p.S1277* 0.14 TCGA-93-8067-01 14 60072181 60072181 G A RTN1 Nonsense_Mutation p.Q673* 0.09 TCGA-93-8067-01 14 60611732 60611732 C T DHRS7 Splice_Site p.X325_splice 0.20 TCGA-93-8067-01 14 64564707 64564707 A G SYNE2 Missense_Mutation p.N4050S 0.32 possibly_damaging(0.447) TCGA-93-8067-01 14 64676250 64676250 C T SYNE2 Missense_Mutation p.S6165L 0.16 benign(0.341) TCGA-93-8067-01 14 70633819 70633819 T C SLC8A3 Missense_Mutation p.N441D 0.10 deleterious(0.02) benign(0.281) TCGA-93-8067-01 14 74191993 74191993 G C ELMSAN1 Missense_Mutation p.F852L 0.09 deleterious(0) probably_damaging(0.993) TCGA-93-8067-01 14 77494044 77494044 G C IRF2BPL Missense_Mutation p.S31W 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-93-8067-01 14 79432423 79432423 C A NRXN3 Silent p.I444I 0.20 TCGA-93-8067-01 14 80669310 80669310 C A DIO2 Missense_Mutation p.V218L 0.22 deleterious(0.05) benign(0.425) TCGA-93-8067-01 14 89038502 89038502 G T ZC3H14 Missense_Mutation p.A122S 0.27 tolerated(1) benign(0.002) TCGA-93-8067-01 14 92268677 92268677 G A TC2N Silent p.F130F 0.08 TCGA-93-8067-01 14 94931141 94931141 A T SERPINA9 Missense_Mutation p.L336Q 0.30 deleterious(0) probably_damaging(1) TCGA-93-8067-01 15 22382542 22382542 C G OR4N4 Missense_Mutation p.Q24E 0.11 tolerated(0.17) benign(0.014) TCGA-93-8067-01 15 28508179 28508179 G A HERC2 Silent p.S669S 0.39 TCGA-93-8067-01 15 34135718 34135718 G A RYR3 Silent p.L4413L 0.50 TCGA-93-8067-01 15 34521955 34521955 G C EMC4 Missense_Mutation p.R173T 0.36 deleterious(0.01) possibly_damaging(0.733) TCGA-93-8067-01 15 35166146 35166146 C A AQR Silent p.V1160V 0.41 TCGA-93-8067-01 15 39885319 39885319 G A THBS1 Missense_Mutation p.M962I 0.38 tolerated(0.06) benign(0.358) TCGA-93-8067-01 15 42170729 42170729 C T SPTBN5 Missense_Mutation p.R1094Q 0.41 benign(0.001) TCGA-93-8067-01 15 43827592 43827592 G A PPIP5K1 Silent p.F1194F 0.42 TCGA-93-8067-01 15 45007818 45007818 G T B2M Nonsense_Mutation p.E89* 0.41 TCGA-93-8067-01 15 45007819 45007819 A G B2M Missense_Mutation p.E89G 0.41 tolerated(0.24) benign(0.011) TCGA-93-8067-01 15 59323899 59323899 C G RNF111 Nonsense_Mutation p.S293* 0.46 TCGA-93-8067-01 15 64716342 64716342 C G TRIP4 Missense_Mutation p.L491V 0.48 deleterious(0.03) benign(0.279) TCGA-93-8067-01 15 75137884 75137884 G C SCAMP2 Nonsense_Mutation p.S262* 0.36 TCGA-93-8067-01 15 77227977 77227977 G A RCN2 Missense_Mutation p.E121K 0.33 deleterious(0) probably_damaging(1) TCGA-93-8067-01 15 79058524 79058524 C T ADAMTS7 Silent p.L1243L 0.08 TCGA-93-8067-01 15 87089268 87089268 G A AGBL1 Silent p.K861K 0.40 TCGA-93-8067-01 16 11855764 11855764 A G ZC3H7A Splice_Site p.X738_splice 0.17 TCGA-93-8067-01 16 11945367 11945367 C T RSL1D1 Translation_Start_Site p.M1? 0.43 deleterious_low_confidence(0.02) benign(0.035) TCGA-93-8067-01 16 1842110 1842110 G C IGFALS Silent p.L141L 0.10 TCGA-93-8067-01 16 2129040 2129040 C T TSC2 Nonsense_Mutation p.Q992* 0.17 TCGA-93-8067-01 16 24551983 24551983 C T RBBP6 Silent p.L12L 0.19 TCGA-93-8067-01 16 25268335 25268335 C G ZKSCAN2 Silent p.S38S 0.21 TCGA-93-8067-01 16 27518331 27518331 C A GTF3C1 Missense_Mutation p.E463D 0.18 tolerated(0.12) benign(0.015) TCGA-93-8067-01 16 30080846 30080846 G C ALDOA Silent p.L271L 0.20 TCGA-93-8067-01 16 30500431 30500431 C T ITGAL Silent p.F345F 0.11 TCGA-93-8067-01 16 30582337 30582337 G C ZNF688 Missense_Mutation p.R102G 0.07 tolerated(0.38) benign(0.056) TCGA-93-8067-01 16 31475971 31475971 G T ARMC5 Missense_Mutation p.V543L 0.23 deleterious(0.01) probably_damaging(0.995) TCGA-93-8067-01 16 320551 320551 G A RGS11 Nonsense_Mutation p.Q393* 0.19 TCGA-93-8067-01 16 46956285 46956286 - C GPT2 Frame_Shift_Ins p.V393Gfs*8 0.13 TCGA-93-8067-01 16 51185080 51185080 C T SALL1 Missense_Mutation p.D25N 0.41 tolerated(0.45) benign(0) TCGA-93-8067-01 16 53348749 53348749 A C CHD9 Missense_Mutation p.L2443F 0.28 unknown(0) TCGA-93-8067-01 16 53488668 53488668 C T RBL2 Missense_Mutation p.L365F 0.16 tolerated(0.13) benign(0.003) TCGA-93-8067-01 16 618066 618066 C A NHLRC4 Missense_Mutation p.P7T 0.34 deleterious(0.04) possibly_damaging(0.722) TCGA-93-8067-01 16 67576085 67576085 G A FAM65A Missense_Mutation p.E486K 0.17 deleterious(0) probably_damaging(0.913) TCGA-93-8067-01 16 700152 700152 C G WDR90 Silent p.L88L 0.12 TCGA-93-8067-01 16 71319487 71319487 G C CMTR2 Missense_Mutation p.Q113E 0.30 deleterious(0) probably_damaging(0.999) TCGA-93-8067-01 16 90108891 90108891 C G GAS8 Missense_Mutation p.S412W 0.33 deleterious(0) probably_damaging(0.983) TCGA-93-8067-01 17 10214474 10214474 C T MYH13 Silent p.K1534K 0.26 TCGA-93-8067-01 17 10542213 10542213 G C MYH3 Missense_Mutation p.Q1106E 0.18 deleterious(0.02) probably_damaging(0.959) TCGA-93-8067-01 17 1657732 1657732 G A SERPINF2 Silent p.L460L 0.30 TCGA-93-8067-01 17 17942368 17942368 G C ATPAF2 5'UTR 0.31 TCGA-93-8067-01 17 18285004 18285004 G C EVPLL Silent p.G102G 0.26 TCGA-93-8067-01 17 29761112 29761112 C T RAB11FIP4 Missense_Mutation p.A103V 0.23 tolerated(0.26) benign(0.016) TCGA-93-8067-01 17 30688512 30688512 C G ZNF207 Missense_Mutation p.Q193E 0.21 tolerated(0.58) benign(0.092) TCGA-93-8067-01 17 34072251 34072251 C T GAS2L2 Silent p.L755L 0.27 TCGA-93-8067-01 17 34916666 34916666 G C GGNBP2 Missense_Mutation p.R161T 0.09 deleterious(0) probably_damaging(0.999) TCGA-93-8067-01 17 34945659 34945659 G A GGNBP2 Missense_Mutation p.D638N 0.10 deleterious_low_confidence(0) possibly_damaging(0.457) TCGA-93-8067-01 17 36971177 36971177 G C CWC25 Nonsense_Mutation p.S122* 0.20 TCGA-93-8067-01 17 37199457 37199457 T A LRRC37A11P RNA 0.29 TCGA-93-8067-01 17 37213308 37213308 G A CTD-2206N4.4 RNA 0.12 TCGA-93-8067-01 17 37761816 37761816 G A NEUROD2 Missense_Mutation p.S346L 0.29 tolerated(0.06) benign(0.269) TCGA-93-8067-01 17 39684413 39684413 G A KRT19 Silent p.V29V 0.17 TCGA-93-8067-01 17 4173115 4173124 GTTGGCACAA - UBE2G1 3'UTR 0.30 TCGA-93-8067-01 17 42483356 42483356 C T GPATCH8 Missense_Mutation p.E186K 0.26 deleterious(0.01) probably_damaging(0.914) TCGA-93-8067-01 17 42636336 42636336 G A FZD2 Missense_Mutation p.G427D 0.25 deleterious(0) probably_damaging(0.998) TCGA-93-8067-01 17 47304071 47304071 G T PHOSPHO1 5'UTR 0.19 TCGA-93-8067-01 17 48703596 48703596 G C CACNA1G Missense_Mutation p.K2206N 0.09 tolerated_low_confidence(0.28) benign(0.017) TCGA-93-8067-01 17 57288375 57288375 G C SMG8 Missense_Mutation p.Q321H 0.22 deleterious(0.03) probably_damaging(0.915) TCGA-93-8067-01 17 57744325 57744325 C G CLTC Missense_Mutation p.F705L 0.22 deleterious(0.01) possibly_damaging(0.702) TCGA-93-8067-01 17 59760869 59760869 C G BRIP1 Missense_Mutation p.D1180H 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.742) TCGA-93-8067-01 17 62492937 62492937 G A POLG2 Silent p.L50L 0.17 TCGA-93-8067-01 17 62856867 62856867 C G LRRC37A3 Missense_Mutation p.D1133H 0.26 deleterious(0) possibly_damaging(0.496) TCGA-93-8067-01 17 65907073 65907073 G C BPTF Missense_Mutation p.E1025Q 0.22 benign(0.3) TCGA-93-8067-01 17 65908725 65908725 C T BPTF Silent p.V1575V 0.09 TCGA-93-8067-01 17 7348744 7348744 G T CHRNB1 Intron 0.38 TCGA-93-8067-01 17 73624501 73624501 G A RECQL5 Nonsense_Mutation p.Q868* 0.10 TCGA-93-8067-01 17 73647079 73647079 G A RECQL5 Intron 0.29 TCGA-93-8067-01 17 74158662 74158662 C T RNF157 Missense_Mutation p.E255K 0.23 deleterious(0) possibly_damaging(0.721) TCGA-93-8067-01 17 7577085 7577085 C T TP53 Missense_Mutation p.E285K 0.34 deleterious(0) probably_damaging(0.985) TCGA-93-8067-01 17 76869934 76869934 G C TIMP2 Missense_Mutation p.I66M 0.07 tolerated(0.11) probably_damaging(0.963) TCGA-93-8067-01 17 7797908 7797908 A G CHD3 Silent p.K476K 0.31 TCGA-93-8067-01 17 78360641 78360641 C A RNF213 Silent p.R4958R 0.25 TCGA-93-8067-01 17 8076612 8076612 C G TMEM107 3'Flank 0.29 TCGA-93-8067-01 17 80895219 80895219 C T TBCD Silent p.L1088L 0.27 TCGA-93-8067-01 18 12009892 12009892 G T IMPA2 Nonsense_Mutation p.E81* 0.10 TCGA-93-8067-01 18 14183687 14183687 G A ANKRD20A5P RNA 0.07 TCGA-93-8067-01 18 15316720 15316720 C T RNU6-721P 3'Flank 0.24 TCGA-93-8067-01 18 21393038 21393038 G C LAMA3 Missense_Mutation p.D587H 0.10 benign(0.151) TCGA-93-8067-01 18 24496409 24496409 C T CHST9 Silent p.Q382Q 0.21 TCGA-93-8067-01 18 29171754 29171754 C A TTR 5'UTR 0.50 TCGA-93-8067-01 18 42531223 42531223 G A SETBP1 Missense_Mutation p.D640N 0.21 tolerated(0.18) possibly_damaging(0.732) TCGA-93-8067-01 18 59763180 59763180 G A PIGN Missense_Mutation p.S694F 0.38 tolerated(0.24) benign(0.03) TCGA-93-8067-01 18 59966023 59966023 G T KIAA1468 Missense_Mutation p.V1154F 0.23 deleterious(0.04) probably_damaging(0.953) TCGA-93-8067-01 18 67872874 67872874 G A RTTN Silent p.I7I 0.31 TCGA-93-8067-01 18 8785977 8785977 G A SOGA2 Missense_Mutation p.R592Q 0.16 tolerated(0.17) benign(0.036) TCGA-93-8067-01 18 9258684 9258684 G C ANKRD12 Missense_Mutation p.E1807Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-93-8067-01 19 1005107 1005107 C G GRIN3B Missense_Mutation p.S536C 0.18 deleterious(0) probably_damaging(0.992) TCGA-93-8067-01 19 10395578 10395578 G C ICAM1 Missense_Mutation p.D434H 0.26 deleterious(0.03) possibly_damaging(0.787) TCGA-93-8067-01 19 12088997 12088997 G T ZNF763 Missense_Mutation p.Q89H 0.19 tolerated(0.54) benign(0.04) TCGA-93-8067-01 19 16222586 16222586 G A RAB8A 5'UTR 0.26 TCGA-93-8067-01 19 17534379 17534379 C G MVB12A Silent p.L162L 0.20 TCGA-93-8067-01 19 17927681 17927681 C T INSL3 Silent p.%3D 0.14 TCGA-93-8067-01 19 18545055 18545055 G A SSBP4 Silent p.%3D 0.11 TCGA-93-8067-01 19 1912274 1912274 G A ADAT3 Silent p.L76L 0.27 TCGA-93-8067-01 19 19360591 19360591 G A NCAN Silent p.R1279R 0.13 TCGA-93-8067-01 19 20728564 20728564 T C ZNF737 Missense_Mutation p.K149E 0.35 tolerated(0.17) benign(0.162) TCGA-93-8067-01 19 21606115 21606115 C T ZNF493 Silent p.A218A 0.42 TCGA-93-8067-01 19 22846914 22846914 A T ZNF492 Missense_Mutation p.K148M 0.08 deleterious(0.02) probably_damaging(0.99) TCGA-93-8067-01 19 2733109 2733109 C G SLC39A3 Missense_Mutation p.E195D 0.29 tolerated(0.64) benign(0.002) TCGA-93-8067-01 19 2799701 2799701 C T THOP1 Silent p.I167I 0.32 TCGA-93-8067-01 19 32873415 32873415 G C ZNF507 Missense_Mutation p.L801F 0.24 deleterious(0) possibly_damaging(0.86) TCGA-93-8067-01 19 35752837 35752837 C G LSR Nonsense_Mutation p.S243* 0.28 TCGA-93-8067-01 19 36212555 36212555 T C KMT2B Missense_Mutation p.M769T 0.36 benign(0) TCGA-93-8067-01 19 36509865 36509865 G A CLIP3 Missense_Mutation p.S373F 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-93-8067-01 19 40996002 40996002 C A SPTBN4 Silent p.R114R 0.29 TCGA-93-8067-01 19 40996003 40996003 A T SPTBN4 Missense_Mutation p.M115L 0.30 deleterious(0) benign(0.004) TCGA-93-8067-01 19 42583812 42583812 G C ZNF574 Missense_Mutation p.D352H 0.18 deleterious(0.03) probably_damaging(0.988) TCGA-93-8067-01 19 42584270 42584270 C T ZNF574 Silent p.F504F 0.27 TCGA-93-8067-01 19 42906899 42906899 C T LIPE Missense_Mutation p.E943K 0.21 tolerated(0.21) benign(0.048) TCGA-93-8067-01 19 43348703 43348703 A G PSG10P RNA 0.23 TCGA-93-8067-01 19 43371250 43371250 C A PSG1 3'Flank 0.18 TCGA-93-8067-01 19 43414795 43414795 C G PSG6 Missense_Mutation p.E215Q 0.24 deleterious(0.03) probably_damaging(0.989) TCGA-93-8067-01 19 43864550 43864550 A T CD177 3'UTR 0.19 TCGA-93-8067-01 19 44038585 44038585 G A ZNF575 Missense_Mutation p.R4Q 0.38 tolerated(0.06) benign(0.003) TCGA-93-8067-01 19 44103336 44103336 G A ZNF576 Missense_Mutation p.E147K 0.24 tolerated(0.36) probably_damaging(0.998) TCGA-93-8067-01 19 4429522 4429522 G C CHAF1A Missense_Mutation p.E564D 0.10 tolerated(0.1) probably_damaging(0.912) TCGA-93-8067-01 19 4430573 4430573 G A CHAF1A Missense_Mutation p.E628K 0.10 deleterious(0.01) probably_damaging(0.95) TCGA-93-8067-01 19 44418201 44418201 G A ZNF45 Nonsense_Mutation p.Q463* 0.29 TCGA-93-8067-01 19 44471056 44471056 C T ZNF221 Missense_Mutation p.H468Y 0.34 deleterious(0) probably_damaging(1) TCGA-93-8067-01 19 44514964 44514964 G T ZNF230 Missense_Mutation p.G258V 0.17 deleterious(0) probably_damaging(1) TCGA-93-8067-01 19 45262858 45262858 C T BCL3 Missense_Mutation p.P451S 0.22 deleterious_low_confidence(0.01) unknown(0) TCGA-93-8067-01 19 49248543 49248543 C T IZUMO1 Missense_Mutation p.E80K 0.24 tolerated(0.06) possibly_damaging(0.69) TCGA-93-8067-01 19 49843461 49843461 C T CD37 Intron 0.29 TCGA-93-8067-01 19 50189350 50189350 G C PRMT1 Missense_Mutation p.E254Q 0.22 deleterious(0.03) possibly_damaging(0.791) TCGA-93-8067-01 19 50265262 50265262 A C TSKS Missense_Mutation p.L133R 0.16 deleterious(0) probably_damaging(0.979) TCGA-93-8067-01 19 51955813 51955813 C G SIGLEC8 Silent p.G440G 0.16 TCGA-93-8067-01 19 52785408 52785408 G C ZNF766 Missense_Mutation p.E21D 0.27 deleterious(0.05) possibly_damaging(0.815) TCGA-93-8067-01 19 5456148 5456148 G A ZNRF4 Missense_Mutation p.E216K 0.29 deleterious(0.04) possibly_damaging(0.63) TCGA-93-8067-01 19 54660593 54660593 C A LENG1 Missense_Mutation p.Q161H 0.29 tolerated(0.07) possibly_damaging(0.532) TCGA-93-8067-01 19 54665951 54665951 C T TMC4 Missense_Mutation p.E531K 0.17 deleterious(0.03) probably_damaging(0.997) TCGA-93-8067-01 19 54665969 54665969 C G TMC4 Missense_Mutation p.E525Q 0.13 deleterious(0) probably_damaging(1) TCGA-93-8067-01 19 54667500 54667500 C T TMC4 Silent p.L417L 0.20 TCGA-93-8067-01 19 54726913 54726913 G C LILRB3 5'Flank 0.10 TCGA-93-8067-01 19 54746116 54746116 G C LILRA6 Missense_Mutation p.I47M 0.14 deleterious(0.02) probably_damaging(0.992) TCGA-93-8067-01 19 54754935 54754935 G C LILRB5 Intron 0.13 TCGA-93-8067-01 19 55592212 55592212 G A EPS8L1 Missense_Mutation p.A168T 0.21 tolerated(0.37) benign(0.276) TCGA-93-8067-01 19 55592849 55592849 G A EPS8L1 Missense_Mutation p.E255K 0.15 deleterious(0) possibly_damaging(0.451) TCGA-93-8067-01 19 55718105 55718105 C G PTPRH Missense_Mutation p.E102Q 0.17 possibly_damaging(0.679) TCGA-93-8067-01 19 56190126 56190126 G T EPN1 Missense_Mutation p.D156Y 0.19 deleterious(0) unknown(0) TCGA-93-8067-01 19 58437871 58437871 G A ZNF418 Missense_Mutation p.H560Y 0.32 deleterious(0) possibly_damaging(0.844) TCGA-93-8067-01 19 58578399 58578399 G A ZNF135 Missense_Mutation p.E207K 0.21 tolerated(0.7) possibly_damaging(0.794) TCGA-93-8067-01 19 58983039 58983039 G A ZNF324 Missense_Mutation p.E394K 0.19 deleterious(0) probably_damaging(0.999) TCGA-93-8067-01 19 6744951 6744951 C T TRIP10 Silent p.L310L 0.37 TCGA-93-8067-01 19 7506895 7506895 G C ARHGEF18 Missense_Mutation p.K251N 0.21 tolerated(0.07) possibly_damaging(0.77) TCGA-93-8067-01 19 7810438 7810438 G C CD209 Missense_Mutation p.I238M 0.22 tolerated(0.1) benign(0.047) TCGA-93-8067-01 19 8056709 8056709 C A ELAVL1 5'UTR 0.12 TCGA-93-8067-01 19 9077787 9077787 A T MUC16 Missense_Mutation p.I3220N 0.21 unknown(0) TCGA-93-8067-01 1 10195123 10195123 C G UBE4B Missense_Mutation p.I701M 0.22 deleterious(0) probably_damaging(0.992) TCGA-93-8067-01 1 107867486 107867486 G A NTNG1 Missense_Mutation p.D277N 0.32 tolerated(0.16) probably_damaging(0.999) TCGA-93-8067-01 1 11115022 11115022 G T SRM Silent p.R295R 0.10 TCGA-93-8067-01 1 11141233 11141233 T C EXOSC10 Missense_Mutation p.Y448C 0.24 deleterious(0) probably_damaging(1) TCGA-93-8067-01 1 1154297 1154297 G T SDF4 Silent p.V196V 0.20 TCGA-93-8067-01 1 11861279 11861279 G A MTHFR Silent p.I138I 0.24 TCGA-93-8067-01 1 1420549 1420549 C T ATAD3B Nonsense_Mutation p.Q302* 0.09 TCGA-93-8067-01 1 144886255 144886255 C T PDE4DIP Silent p.P993P 0.04 TCGA-93-8067-01 1 153745745 153745745 G A INTS3 Silent p.%3D 0.12 TCGA-93-8067-01 1 154239025 154239025 C T UBAP2L Missense_Mutation p.S984F 0.07 deleterious(0) probably_damaging(0.986) TCGA-93-8067-01 1 154480903 154480903 C G TDRD10 Missense_Mutation p.F29L 0.08 tolerated(0.47) benign(0.007) TCGA-93-8067-01 1 155005659 155005659 G T DCST2 Missense_Mutation p.T117N 0.26 tolerated(0.17) benign(0.01) TCGA-93-8067-01 1 155294228 155294228 C T RUSC1 Intron 0.11 TCGA-93-8067-01 1 155638424 155638424 G A YY1AP1 Silent p.I429I 0.16 TCGA-93-8067-01 1 156213735 156213735 C G PAQR6 Missense_Mutation p.E325Q 0.13 deleterious_low_confidence(0) unknown(0) TCGA-93-8067-01 1 156626862 156626862 C A BCAN Missense_Mutation p.T728K 0.27 deleterious(0) probably_damaging(0.998) TCGA-93-8067-01 1 156626863 156626863 A C BCAN Silent p.T728T 0.28 TCGA-93-8067-01 1 156646679 156646679 C G NES Silent p.L126L 0.18 TCGA-93-8067-01 1 157062633 157062633 C G ETV3L Missense_Mutation p.E298D 0.10 tolerated(0.08) benign(0.001) TCGA-93-8067-01 1 157106124 157106124 G A ETV3 Silent p.I7I 0.18 TCGA-93-8067-01 1 157765840 157765840 G C FCRL1 3'UTR 0.07 TCGA-93-8067-01 1 158325349 158325349 G A CD1E Silent p.L205L 0.08 TCGA-93-8067-01 1 158576398 158576398 C G OR10Z1 Missense_Mutation p.T57S 0.23 deleterious(0) benign(0.003) TCGA-93-8067-01 1 159889525 159889525 G C TAGLN2 Missense_Mutation p.S94C 0.16 deleterious(0) possibly_damaging(0.666) TCGA-93-8067-01 1 160269029 160269029 C G COPA Missense_Mutation p.D574H 0.11 deleterious(0) possibly_damaging(0.878) TCGA-93-8067-01 1 160388969 160388969 C G VANGL2 Missense_Mutation p.L124V 0.07 tolerated(0.37) benign(0.015) TCGA-93-8067-01 1 160920406 160920406 C T ITLN2 Silent p.L179L 0.10 TCGA-93-8067-01 1 16260739 16260739 G A SPEN Silent p.L2668L 0.11 TCGA-93-8067-01 1 16525664 16525664 C T ARHGEF19 Silent p.V744V 0.13 TCGA-93-8067-01 1 165619077 165619077 G C MGST3 Splice_Site 0.12 TCGA-93-8067-01 1 166904577 166904577 G T ILDR2 Missense_Mutation p.P281T 0.22 tolerated(0.1) probably_damaging(0.999) TCGA-93-8067-01 1 167096012 167096012 G C DUSP27 Missense_Mutation p.K548N 0.16 deleterious(0) possibly_damaging(0.886) TCGA-93-8067-01 1 167334802 167334802 C G POU2F1 Missense_Mutation p.Q76E 0.14 tolerated_low_confidence(0.17) unknown(0) TCGA-93-8067-01 1 169439325 169439325 C A SLC19A2 Missense_Mutation p.A303S 0.09 deleterious(0.02) probably_damaging(0.986) TCGA-93-8067-01 1 169510493 169510493 C T F5 Missense_Mutation p.D1279N 0.16 tolerated_low_confidence(0.08) benign(0.006) TCGA-93-8067-01 1 170521271 170521271 G A GORAB Missense_Mutation p.E285K 0.14 deleterious(0) probably_damaging(1) TCGA-93-8067-01 1 171236773 171236773 C A FMO1 Missense_Mutation p.P75Q 0.34 tolerated(0.07) probably_damaging(0.988) TCGA-93-8067-01 1 173155648 173155648 C G TNFSF4 3'UTR 0.13 TCGA-93-8067-01 1 176050403 176050403 G C RFWD2 Missense_Mutation p.Q388E 0.30 tolerated(1) benign(0.12) TCGA-93-8067-01 1 179064464 179064464 C G TOR3A 3'UTR 0.07 TCGA-93-8067-01 1 182368763 182368763 G A TEDDM1 3'UTR 0.22 TCGA-93-8067-01 1 185703881 185703881 G C HMCN1 5'UTR 0.18 TCGA-93-8067-01 1 186101525 186101525 G A HMCN1 Missense_Mutation p.M4432I 0.24 benign(0.402) TCGA-93-8067-01 1 207041829 207041829 C T IL20 Intron 0.23 TCGA-93-8067-01 1 207649591 207649591 G A CR2 Missense_Mutation p.C910Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-93-8067-01 1 212538528 212538528 G C TMEM206 3'UTR 0.21 TCGA-93-8067-01 1 216595651 216595651 A G USH2A Missense_Mutation p.S10P 0.16 benign(0.001) TCGA-93-8067-01 1 220219829 220219829 C A EPRS 5'UTR 0.50 TCGA-93-8067-01 1 220324614 220324633 GGCTTCCACAGCTTCAATGA - RAB3GAP2 Frame_Shift_Del p.L1381Hfs*14 0.19 TCGA-93-8067-01 1 22168096 22168096 G C HSPG2 Silent p.T3088T 0.26 TCGA-93-8067-01 1 222826630 222826630 C G MIA3 Missense_Mutation p.Q1424E 0.31 tolerated(0.37) benign(0.03) TCGA-93-8067-01 1 222827592 222827592 G T MIA3 Silent p.R1443R 0.20 TCGA-93-8067-01 1 228247824 228247824 C T WNT3A 3'UTR 0.21 TCGA-93-8067-01 1 233363037 233363037 G C PCNXL2 Missense_Mutation p.I813M 0.15 tolerated(0.23) benign(0.326) TCGA-93-8067-01 1 242030234 242030234 G T EXO1 Missense_Mutation p.G382C 0.16 deleterious(0.03) possibly_damaging(0.592) TCGA-93-8067-01 1 242277289 242277289 C G PLD5 Missense_Mutation p.D325H 0.17 deleterious(0) probably_damaging(0.998) TCGA-93-8067-01 1 24383947 24383947 G C MYOM3 Silent p.V1407V 0.08 TCGA-93-8067-01 1 248020584 248020584 G A TRIM58 Silent p.E12E 0.25 TCGA-93-8067-01 1 248458629 248458629 C A OR2T12 Missense_Mutation p.L84F 0.09 deleterious(0.01) benign(0.167) TCGA-93-8067-01 1 248801942 248801942 C A OR2T35 Missense_Mutation p.M206I 0.50 deleterious(0.01) probably_damaging(0.983) TCGA-93-8067-01 1 27676499 27676499 G A SYTL1 Missense_Mutation p.E262K 0.37 tolerated(0.15) benign(0.046) TCGA-93-8067-01 1 27875058 27875058 G C AHDC1 Nonsense_Mutation p.S1190* 0.11 TCGA-93-8067-01 1 28905086 28905086 C T TRNAU1AP 3'Flank 0.29 TCGA-93-8067-01 1 32150129 32150129 C T COL16A1 Missense_Mutation p.E719K 0.18 unknown(0) TCGA-93-8067-01 1 33237497 33237497 C T KIAA1522 Missense_Mutation p.S906L 0.21 tolerated(0.11) benign(0.362) TCGA-93-8067-01 1 33276641 33276641 C A YARS Missense_Mutation p.E25D 0.16 tolerated(1) benign(0) TCGA-93-8067-01 1 33613131 33613131 C G TRIM62 Missense_Mutation p.E359Q 0.12 tolerated(0.09) possibly_damaging(0.903) TCGA-93-8067-01 1 3754084 3754084 C G CEP104 Splice_Site p.X298_splice 0.25 TCGA-93-8067-01 1 3789064 3789064 C G DFFB Nonsense_Mutation p.S237* 0.29 TCGA-93-8067-01 1 40928867 40928867 G A ZFP69B Missense_Mutation p.R404K 0.22 tolerated(0.06) probably_damaging(0.982) TCGA-93-8067-01 1 47059829 47059829 G C MKNK1 5'UTR 0.14 TCGA-93-8067-01 1 47059884 47059884 G A MKNK1 5'UTR 0.23 TCGA-93-8067-01 1 47489387 47489387 G C CYP4X1 5'UTR 0.30 TCGA-93-8067-01 1 51913718 51913718 C A EPS15 Silent p.T217T 0.22 TCGA-93-8067-01 1 52871462 52871462 C G PRPF38A Missense_Mutation p.Q81E 0.19 deleterious(0.01) probably_damaging(0.932) TCGA-93-8067-01 1 54266442 54266442 G C NDC1 Silent p.L382L 0.33 TCGA-93-8067-01 1 62593719 62593719 G T INADL Missense_Mutation p.A1707S 0.21 deleterious(0.05) probably_damaging(0.997) TCGA-93-8067-01 1 62923220 62923220 G A DOCK7 Silent p.V2092V 0.26 TCGA-93-8067-01 1 6504635 6504635 C G ESPN Missense_Mutation p.S362W 0.21 deleterious(0) probably_damaging(1) TCGA-93-8067-01 1 70503824 70503824 G A LRRC7 Missense_Mutation p.D735N 0.22 deleterious_low_confidence(0) benign(0.069) TCGA-93-8067-01 1 75038060 75038060 C T C1orf173 Missense_Mutation p.E1112K 0.21 tolerated(0.06) benign(0.046) TCGA-93-8067-01 1 7858730 7858730 G T PER3 Nonsense_Mutation p.E263* 0.11 TCGA-93-8067-01 1 89448344 89448344 C G RBMXL1 Missense_Mutation p.R389T 0.29 deleterious(0) unknown(0) TCGA-93-8067-01 1 9324757 9324757 C A H6PD Silent p.L735L 0.15 TCGA-93-8067-01 20 13763309 13763309 C G ESF1 Missense_Mutation p.E160Q 0.12 deleterious_low_confidence(0.03) benign(0.261) TCGA-93-8067-01 20 14306661 14306661 C T FLRT3 Missense_Mutation p.E498K 0.17 tolerated(0.67) benign(0.01) TCGA-93-8067-01 20 15913923 15913923 G A MACROD2 Missense_Mutation p.E260K 0.18 tolerated(0.1) possibly_damaging(0.795) TCGA-93-8067-01 20 17341202 17341202 C A PCSK2 Missense_Mutation p.T141N 0.14 tolerated(0.4) benign(0.367) TCGA-93-8067-01 20 21687652 21687652 C T PAX1 Missense_Mutation p.S288L 0.16 deleterious(0) probably_damaging(0.981) TCGA-93-8067-01 20 2473393 2473393 G A ZNF343 Silent p.L86L 0.17 TCGA-93-8067-01 20 30102373 30102373 G A HM13 Missense_Mutation p.D7N 0.31 deleterious_low_confidence(0.04) possibly_damaging(0.525) TCGA-93-8067-01 20 33583163 33583163 G A MYH7B Missense_Mutation p.E951K 0.19 probably_damaging(0.997) TCGA-93-8067-01 20 33999825 33999834 CCTCCTTTTG - UQCC1 5'UTR 0.42 TCGA-93-8067-01 20 34568410 34568410 C G CNBD2 Missense_Mutation p.I91M 0.22 deleterious(0) probably_damaging(0.997) TCGA-93-8067-01 20 35384207 35384207 C T DSN1 Missense_Mutation p.E251K 0.21 tolerated(0.19) possibly_damaging(0.859) TCGA-93-8067-01 20 3677877 3677877 G A SIGLEC1 Silent p.F745F 0.22 TCGA-93-8067-01 20 42788652 42788652 C T JPH2 Missense_Mutation p.D259N 0.18 deleterious(0.05) probably_damaging(0.998) TCGA-93-8067-01 20 43623833 43623833 C T STK4 Silent p.L210L 0.21 TCGA-93-8067-01 20 44443062 44443062 G C UBE2C Missense_Mutation p.D57H 0.14 deleterious(0) benign(0.035) TCGA-93-8067-01 20 44673770 44673770 C A SLC12A5 Silent p.P543P 0.19 TCGA-93-8067-01 20 49221298 49221298 C T FAM65C Missense_Mutation p.E320K 0.22 deleterious(0.03) benign(0.419) TCGA-93-8067-01 20 50776712 50776712 T C ZFP64 Missense_Mutation p.Y238C 0.39 deleterious(0) probably_damaging(0.999) TCGA-93-8067-01 20 57566100 57566100 C T NELFCD Silent p.F326F 0.19 TCGA-93-8067-01 20 57571710 57571710 G A CTSZ Missense_Mutation p.S262L 0.17 deleterious(0) probably_damaging(1) TCGA-93-8067-01 20 57613527 57613527 C T SLMO2 Silent p.V65V 0.19 TCGA-93-8067-01 20 57769092 57769092 G C ZNF831 Missense_Mutation p.E1006D 0.17 tolerated(0.05) possibly_damaging(0.551) TCGA-93-8067-01 20 58514177 58514177 G C PPP1R3D Missense_Mutation p.N270K 0.17 deleterious(0) probably_damaging(0.997) TCGA-93-8067-01 20 60736626 60736626 G C SS18L1 Missense_Mutation p.Q122H 0.16 deleterious_low_confidence(0.03) probably_damaging(0.928) TCGA-93-8067-01 20 60927004 60927004 G A LAMA5 Silent p.L273L 0.19 TCGA-93-8067-01 20 62321730 62321730 C A RTEL1 Missense_Mutation p.F807L 0.19 tolerated(0.81) benign(0.001) TCGA-93-8067-01 21 10863040 10863040 G T IGHV1OR21-1 Missense_Mutation p.M112I 0.10 tolerated(0.13) benign(0.004) TCGA-93-8067-01 21 11038756 11038756 A C BAGE2 RNA 0.07 TCGA-93-8067-01 21 36265261 36265261 C T RUNX1 Splice_Site p.X20_splice 0.24 TCGA-93-8067-01 21 40569067 40569067 C G BRWD1 Missense_Mutation p.L1976F 0.15 tolerated_low_confidence(0.13) benign(0.1) TCGA-93-8067-01 21 43256743 43256743 C T PRDM15 Silent p.Q705Q 0.21 TCGA-93-8067-01 21 44486390 44486390 G A CBS Silent p.P138P 0.27 TCGA-93-8067-01 21 47735387 47735387 C T C21orf58 Splice_Site p.X148_splice 0.18 TCGA-93-8067-01 22 19967650 19967650 G A ARVCF Missense_Mutation p.R338W 0.08 deleterious(0.01) possibly_damaging(0.667) TCGA-93-8067-01 22 20079483 20079483 C G DGCR8 Missense_Mutation p.F532L 0.27 deleterious(0) probably_damaging(0.971) TCGA-93-8067-01 22 24379450 24379450 C T GSTT1 Missense_Mutation p.D88N 0.45 deleterious(0.02) possibly_damaging(0.798) TCGA-93-8067-01 22 29130664 29130664 T G CHEK2 Missense_Mutation p.S16R 0.14 tolerated_low_confidence(0.06) benign(0.099) TCGA-93-8067-01 22 30218359 30218359 C T ASCC2 Missense_Mutation p.G169E 0.22 deleterious(0) probably_damaging(0.994) TCGA-93-8067-01 22 31858990 31858990 C G EIF4ENIF1 Missense_Mutation p.D239H 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-93-8067-01 22 36587709 36587709 C A APOL4 Missense_Mutation p.G156V 0.23 deleterious(0) probably_damaging(0.943) TCGA-93-8067-01 22 36889734 36889734 G C FOXRED2 Missense_Mutation p.L581V 0.18 deleterious(0.04) possibly_damaging(0.831) TCGA-93-8067-01 22 41829831 41829831 G C TOB2 3'UTR 0.29 TCGA-93-8067-01 22 41919918 41919918 G A ACO2 Silent p.E485E 0.23 TCGA-93-8067-01 22 42059661 42059661 G C XRCC6 Missense_Mutation p.E558Q 0.33 tolerated(0.08) benign(0.159) TCGA-93-8067-01 2 101186146 101186146 G A PDCL3 Missense_Mutation p.E111K 0.13 tolerated(0.26) benign(0.005) TCGA-93-8067-01 2 101667061 101667061 C G TBC1D8 Missense_Mutation p.R210T 0.14 deleterious(0.02) probably_damaging(0.952) TCGA-93-8067-01 2 103061710 103061710 C G IL18RAP Missense_Mutation p.Q328E 0.11 tolerated(0.77) benign(0.013) TCGA-93-8067-01 2 107040265 107040265 C T RGPD3 Silent p.Q1386Q 0.19 TCGA-93-8067-01 2 108488526 108488526 G T RGPD4 Missense_Mutation p.V1356F 0.16 deleterious(0) probably_damaging(0.996) TCGA-93-8067-01 2 108921946 108921946 G A SULT1C2 Missense_Mutation p.V236I 0.23 tolerated(0.49) possibly_damaging(0.669) TCGA-93-8067-01 2 128340002 128340002 G C MYO7B Missense_Mutation p.E442Q 0.36 deleterious(0) probably_damaging(1) TCGA-93-8067-01 2 128366356 128366356 A G MYO7B Missense_Mutation p.Y906C 0.26 tolerated(0.15) probably_damaging(0.999) TCGA-93-8067-01 2 130899725 130899725 G C CCDC74B Silent p.V175V 0.08 TCGA-93-8067-01 2 132276182 132276182 G T AC093838.4 RNA 0.17 TCGA-93-8067-01 2 141113914 141113914 C T LRP1B Missense_Mutation p.E3843K 0.22 benign(0.292) TCGA-93-8067-01 2 163241412 163241412 G T KCNH7 Silent p.T916T 0.18 TCGA-93-8067-01 2 165947292 165947292 C T SCN3A Missense_Mutation p.E1791K 0.18 deleterious(0) probably_damaging(0.996) TCGA-93-8067-01 2 172926242 172926242 C T METAP1D Silent p.F19F 0.17 TCGA-93-8067-01 2 175677110 175677110 C T CHN1 Silent p.T271T 0.16 TCGA-93-8067-01 2 177034197 177034197 C A HOXD3 Missense_Mutation p.P119T 0.20 tolerated(0.62) possibly_damaging(0.908) TCGA-93-8067-01 2 178098975 178098975 A G NFE2L2 Missense_Mutation p.W24R 0.38 deleterious(0) probably_damaging(1) TCGA-93-8067-01 2 178534241 178534241 C G PDE11A Missense_Mutation p.E848Q 0.15 tolerated(0.06) benign(0.096) TCGA-93-8067-01 2 179440946 179440946 C G TTN Missense_Mutation p.D23305H 0.22 TCGA-93-8067-01 2 17998209 17998209 G C MSGN1 Missense_Mutation p.D142H 0.26 deleterious(0) probably_damaging(0.963) TCGA-93-8067-01 2 180810028 180810028 G C CWC22 Nonsense_Mutation p.S852* 0.18 TCGA-93-8067-01 2 181922511 181922511 G A UBE2E3 Missense_Mutation p.D113N 0.41 tolerated(0.11) probably_damaging(0.912) TCGA-93-8067-01 2 191872321 191872321 T C STAT1 Missense_Mutation p.K114E 0.13 tolerated(0.41) benign(0.162) TCGA-93-8067-01 2 198570150 198570150 C T MARS2 Silent p.L7L 0.13 TCGA-93-8067-01 2 201814359 201814359 C G ORC2 Missense_Mutation p.L82F 0.11 tolerated(0.37) benign(0.091) TCGA-93-8067-01 2 202003529 202003529 C G CFLAR Intron 0.21 TCGA-93-8067-01 2 203682252 203682252 C T ICA1L Silent p.V191V 0.21 TCGA-93-8067-01 2 206980863 206980863 C T AC007383.4 RNA 0.07 TCGA-93-8067-01 2 207169995 207169995 C T ZDBF2 Missense_Mutation p.S248L 0.17 deleterious(0) benign(0.307) TCGA-93-8067-01 2 21233601 21233601 C T APOB Missense_Mutation p.E2047K 0.21 benign(0.039) TCGA-93-8067-01 2 212530094 212530094 C T ERBB4 Missense_Mutation p.D609N 0.13 deleterious(0.04) benign(0.237) TCGA-93-8067-01 2 228197302 228197302 G A MFF Missense_Mutation p.E143K 0.17 deleterious(0.02) probably_damaging(0.98) TCGA-93-8067-01 2 228846466 228846466 C T SPHKAP Silent p.L1690L 0.18 TCGA-93-8067-01 2 231157404 231157404 C T SP140 Silent p.F623F 0.17 TCGA-93-8067-01 2 238287660 238287660 G A COL6A3 Silent p.L706L 0.16 TCGA-93-8067-01 2 238483689 238483689 C T RAB17 Silent p.A204A 0.20 TCGA-93-8067-01 2 241492374 241492374 C T ANKMY1 Missense_Mutation p.R57Q 0.25 deleterious(0.01) possibly_damaging(0.638) TCGA-93-8067-01 2 241969721 241969721 C G SNED1 Missense_Mutation p.I78M 0.19 deleterious(0) possibly_damaging(0.824) TCGA-93-8067-01 2 242380735 242380735 A G FARP2 Missense_Mutation p.E392G 0.19 deleterious(0.03) possibly_damaging(0.616) TCGA-93-8067-01 2 27325437 27325437 G C CGREF1 Missense_Mutation p.Q35E 0.21 tolerated(0.24) benign(0.064) TCGA-93-8067-01 2 32958898 32958898 C T TTC27 Missense_Mutation p.L413F 0.23 deleterious(0) probably_damaging(0.984) TCGA-93-8067-01 2 36744610 36744610 G A CRIM1 Missense_Mutation p.E711K 0.19 tolerated(0.1) probably_damaging(0.991) TCGA-93-8067-01 2 46608855 46608855 G C EPAS1 Silent p.L722L 0.20 TCGA-93-8067-01 2 54081848 54081848 G A GPR75 Missense_Mutation p.L16F 0.45 tolerated_low_confidence(0.42) benign(0.001) TCGA-93-8067-01 2 64144059 64144059 C G VPS54 Missense_Mutation p.E735Q 0.10 deleterious(0.02) possibly_damaging(0.557) TCGA-93-8067-01 2 73316167 73316167 G C RAB11FIP5 Silent p.L236L 0.22 TCGA-93-8067-01 2 73677423 73677423 C T ALMS1 Missense_Mutation p.H1256Y 0.19 possibly_damaging(0.792) TCGA-93-8067-01 2 85888574 85888574 C T SFTPB Intron 0.26 TCGA-93-8067-01 2 87069424 87069424 C T CD8B Intron 0.27 TCGA-93-8067-01 2 99797427 99797427 C G MITD1 Silent p.L6L 0.13 TCGA-93-8067-01 2 99984953 99984953 C G EIF5B Intron 0.09 TCGA-93-8067-01 3 100354668 100354668 G C GPR128 Missense_Mutation p.E199Q 0.23 tolerated(0.39) benign(0.139) TCGA-93-8067-01 3 107778371 107778371 C A CD47 Missense_Mutation p.A207S 0.37 tolerated(0.53) benign(0.106) TCGA-93-8067-01 3 108626864 108626864 C T GUCA1C 3'UTR 0.17 TCGA-93-8067-01 3 111632360 111632360 G A PHLDB2 Silent p.R510R 0.15 TCGA-93-8067-01 3 119426384 119426384 G C MAATS1 Missense_Mutation p.R112T 0.08 tolerated(0.11) benign(0.248) TCGA-93-8067-01 3 123066634 123066634 G T ADCY5 Missense_Mutation p.N467K 0.15 deleterious(0.01) probably_damaging(0.916) TCGA-93-8067-01 3 124951270 124951270 G A ZNF148 Missense_Mutation p.S767L 0.11 tolerated(0.07) benign(0.02) TCGA-93-8067-01 3 125725692 125725692 C G SLC41A3 Intron 0.30 TCGA-93-8067-01 3 128199879 128199879 C T GATA2 Missense_Mutation p.V476M 0.33 deleterious(0.03) probably_damaging(0.986) TCGA-93-8067-01 3 133118930 133118930 G A BFSP2 Translation_Start_Site p.M1? 0.18 deleterious_low_confidence(0) benign(0.035) TCGA-93-8067-01 3 136573862 136573862 C G SLC35G2 Nonsense_Mutation p.S187* 0.20 TCGA-93-8067-01 3 137822729 137822729 G A DZIP1L Missense_Mutation p.R29C 0.19 deleterious(0) probably_damaging(1) TCGA-93-8067-01 3 138665307 138665307 C T FOXL2 Silent p.A86A 0.15 TCGA-93-8067-01 3 141164465 141164465 G A ZBTB38 Missense_Mutation p.E1079K 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-93-8067-01 3 141712399 141712399 C T TFDP2 Missense_Mutation p.D113N 0.19 deleterious(0.01) benign(0.118) TCGA-93-8067-01 3 148601507 148601507 G A CPA3 Missense_Mutation p.E296K 0.18 tolerated(0.21) benign(0.079) TCGA-93-8067-01 3 15093882 15093882 A C MRPS25 3'UTR 0.12 TCGA-93-8067-01 3 153839996 153839996 C T ARHGEF26 Missense_Mutation p.S72L 0.19 tolerated_low_confidence(0.09) benign(0.109) TCGA-93-8067-01 3 156272819 156272819 G T SSR3 Missense_Mutation p.F20L 0.20 deleterious(0.05) benign(0.193) TCGA-93-8067-01 3 15642940 15642940 C T HACL1 Missense_Mutation p.E11K 0.23 tolerated_low_confidence(0.07) benign(0.012) TCGA-93-8067-01 3 164735606 164735606 C G SI Missense_Mutation p.L1192F 0.19 deleterious(0.01) probably_damaging(0.984) TCGA-93-8067-01 3 167045853 167045853 G A ZBBX Silent p.L247L 0.18 TCGA-93-8067-01 3 179472617 179472617 C A USP13 Silent p.P632P 0.22 TCGA-93-8067-01 3 182937685 182937685 C G MCF2L2 Missense_Mutation p.D777H 0.15 deleterious(0) probably_damaging(0.999) TCGA-93-8067-01 3 183967492 183967492 C G ECE2 Missense_Mutation p.P4A 0.18 tolerated_low_confidence(1) benign(0.002) TCGA-93-8067-01 3 184018147 184018147 C T PSMD2 Missense_Mutation p.S91L 0.20 deleterious(0) probably_damaging(0.999) TCGA-93-8067-01 3 184290555 184290555 G T EPHB3 Missense_Mutation p.W149C 0.12 deleterious(0) probably_damaging(1) TCGA-93-8067-01 3 186257180 186257180 G C CRYGS Silent p.L76L 0.16 TCGA-93-8067-01 3 186507953 186507953 G C RFC4 Missense_Mutation p.S325C 0.17 tolerated(0.06) benign(0.164) TCGA-93-8067-01 3 3182296 3182296 G A TRNT1 Missense_Mutation p.E149K 0.17 tolerated(0.41) possibly_damaging(0.454) TCGA-93-8067-01 3 39118627 39118627 C T WDR48 Intron 0.34 TCGA-93-8067-01 3 49750010 49750010 C T RNF123 Silent p.F865F 0.26 TCGA-93-8067-01 3 50220144 50220144 C T SEMA3F Silent p.F277F 0.26 TCGA-93-8067-01 3 54961971 54961971 C T LRTM1 5'UTR 0.24 TCGA-93-8067-01 3 57488152 57488152 C T DNAH12 Missense_Mutation p.D381N 0.27 deleterious(0.03) benign(0.071) TCGA-93-8067-01 3 73651536 73651536 C T PDZRN3 Missense_Mutation p.G296E 0.26 tolerated(0.16) benign(0.196) TCGA-93-8067-01 3 74350654 74350654 C T CNTN3 Missense_Mutation p.E664K 0.27 tolerated(0.06) possibly_damaging(0.734) TCGA-93-8067-01 3 9055495 9055495 C T SRGAP3 Silent p.Q615Q 0.26 TCGA-93-8067-01 3 93845109 93845109 G A NSUN3 Silent p.T266T 0.12 TCGA-93-8067-01 3 98251868 98251868 G A GPR15 Missense_Mutation p.E331K 0.19 tolerated(0.12) possibly_damaging(0.856) TCGA-93-8067-01 4 100480443 100480443 T - TRMT10A Frame_Shift_Del p.K18Sfs*4 0.14 TCGA-93-8067-01 4 114170951 114170951 G A ANK2 Missense_Mutation p.R308Q 0.22 probably_damaging(0.999) TCGA-93-8067-01 4 114824021 114824021 G A ARSJ Silent p.I403I 0.26 TCGA-93-8067-01 4 115544150 115544150 C A UGT8 Missense_Mutation p.F38L 0.20 tolerated(0.1) probably_damaging(0.998) TCGA-93-8067-01 4 123848876 123848876 G A SPATA5 Missense_Mutation p.R84Q 0.23 deleterious(0.05) probably_damaging(0.999) TCGA-93-8067-01 4 13605215 13605215 C A BOD1L1 Missense_Mutation p.Q1103H 0.25 probably_damaging(0.959) TCGA-93-8067-01 4 153897474 153897474 G C FHDC1 Missense_Mutation p.E1011Q 0.24 tolerated(0.59) benign(0.016) TCGA-93-8067-01 4 154523788 154523788 C G KIAA0922 Missense_Mutation p.L850V 0.25 deleterious(0) probably_damaging(0.999) TCGA-93-8067-01 4 154624869 154624869 G A TLR2 Missense_Mutation p.M270I 0.17 tolerated(0.47) benign(0.002) TCGA-93-8067-01 4 160189301 160189301 C T RAPGEF2 5'UTR 0.32 TCGA-93-8067-01 4 160273951 160273951 C A RAPGEF2 Nonsense_Mutation p.S1166* 0.18 TCGA-93-8067-01 4 17516810 17516810 G C CLRN2 5'UTR 0.17 TCGA-93-8067-01 4 185687869 185687869 C T ACSL1 Silent p.L390L 0.13 TCGA-93-8067-01 4 190873383 190873383 G A FRG1 Missense_Mutation p.G67E 0.08 tolerated(0.41) possibly_damaging(0.847) TCGA-93-8067-01 4 2242524 2242524 C T HAUS3 Silent p.Q50Q 0.22 TCGA-93-8067-01 4 47548905 47548905 C G ATP10D Intron 0.24 TCGA-93-8067-01 4 48517101 48517101 C T FRYL Silent p.L2627L 0.24 TCGA-93-8067-01 4 48542384 48542384 G C FRYL Missense_Mutation p.P2094R 0.32 deleterious(0) probably_damaging(0.974) TCGA-93-8067-01 4 48559525 48559525 C A FRYL Missense_Mutation p.G1357V 0.24 deleterious(0) probably_damaging(0.998) TCGA-93-8067-01 4 48559526 48559526 C A FRYL Nonsense_Mutation p.G1357* 0.25 TCGA-93-8067-01 4 53330 53330 G C ZNF595 5'UTR 0.03 TCGA-93-8067-01 4 56734553 56734553 T C EXOC1 Missense_Mutation p.V156A 0.23 tolerated(0.82) benign(0) TCGA-93-8067-01 4 68620010 68620010 G A GNRHR Missense_Mutation p.S15L 0.21 tolerated(0.07) benign(0.004) TCGA-93-8067-01 4 71847739 71847739 G A MOB1B Missense_Mutation p.E211K 0.11 deleterious(0.02) benign(0.078) TCGA-93-8067-01 4 84376606 84376606 C T HELQ Missense_Mutation p.D81N 0.19 tolerated_low_confidence(0.29) benign(0.012) TCGA-93-8067-01 4 95539174 95539174 C T PDLIM5 Missense_Mutation p.P343S 0.15 tolerated(0.46) benign(0.002) TCGA-93-8067-01 5 136448128 136448128 G C SPOCK1 Missense_Mutation p.S157C 0.37 deleterious(0) probably_damaging(0.943) TCGA-93-8067-01 5 137426400 137426400 G C WNT8A Missense_Mutation p.E232Q 0.12 tolerated(0.17) probably_damaging(0.999) TCGA-93-8067-01 5 137519250 137519250 C G KIF20A Silent p.L373L 0.24 TCGA-93-8067-01 5 13871085 13871085 C T DNAH5 Missense_Mutation p.E1209K 0.11 benign(0.292) TCGA-93-8067-01 5 140203436 140203436 G T PCDHA5 Silent p.L692L 0.33 TCGA-93-8067-01 5 140209291 140209291 G T PCDHA6 Missense_Mutation p.D539Y 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-93-8067-01 5 140502213 140502213 C T PCDHB4 Silent p.L211L 0.25 TCGA-93-8067-01 5 140735121 140735121 G A PCDHGA4 Silent p.R118R 0.17 TCGA-93-8067-01 5 14474147 14474147 G C TRIO Missense_Mutation p.M2008I 0.13 benign(0.002) TCGA-93-8067-01 5 154394241 154394241 C T KIF4B Silent p.I274I 0.11 TCGA-93-8067-01 5 158522672 158522672 C A EBF1 Nonsense_Mutation p.E123* 0.16 TCGA-93-8067-01 5 168189549 168189549 G A SLIT3 Silent p.T535T 0.29 TCGA-93-8067-01 5 176637183 176637183 G A NSD1 Missense_Mutation p.E595K 0.28 tolerated_low_confidence(0.1) benign(0.012) TCGA-93-8067-01 5 178454577 178454577 A T ZNF879 Missense_Mutation p.N46I 0.10 deleterious(0) possibly_damaging(0.867) TCGA-93-8067-01 5 178552074 178552074 G A ADAMTS2 Missense_Mutation p.S953F 0.13 deleterious(0.01) possibly_damaging(0.857) TCGA-93-8067-01 5 179192990 179192990 C T MAML1 Silent p.L327L 0.12 TCGA-93-8067-01 5 180166746 180166746 G A OR2Y1 Silent p.L105L 0.40 TCGA-93-8067-01 5 2749510 2749510 G A IRX2 Missense_Mutation p.S214L 0.07 tolerated(0.09) probably_damaging(0.92) TCGA-93-8067-01 5 32108194 32108194 G C PDZD2 Missense_Mutation p.E2825Q 0.20 deleterious(0.01) probably_damaging(1) TCGA-93-8067-01 5 36105264 36105264 C G LMBRD2 Missense_Mutation p.E645Q 0.16 tolerated(0.06) benign(0.156) TCGA-93-8067-01 5 36985131 36985131 G A NIPBL Missense_Mutation p.E617K 0.21 tolerated_low_confidence(0.07) benign(0.076) TCGA-93-8067-01 5 56778234 56778234 C T ACTBL2 Missense_Mutation p.E101K 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.57) TCGA-93-8067-01 5 65077225 65077225 G C NLN Missense_Mutation p.A267P 0.31 deleterious(0) probably_damaging(0.996) TCGA-93-8067-01 5 66480257 66480257 G T CD180 Silent p.S138S 0.15 TCGA-93-8067-01 5 72374089 72374089 G C FCHO2 Missense_Mutation p.E644Q 0.23 deleterious(0.01) probably_damaging(0.968) TCGA-93-8067-01 5 7868116 7868117 - T FASTKD3 Frame_Shift_Ins p.N27Kfs*2 0.11 TCGA-93-8067-01 5 81574175 81574175 G C RPS23 5'UTR 0.17 TCGA-93-8067-01 5 96139402 96139402 G A ERAP1 Silent p.F76F 0.29 TCGA-93-8067-01 6 101095322 101095322 T A ASCC3 Silent p.A1086A 0.31 TCGA-93-8067-01 6 107070779 107070779 C G RTN4IP1 Missense_Mutation p.E114Q 0.36 deleterious(0.02) probably_damaging(0.987) TCGA-93-8067-01 6 117861837 117861837 C T DCBLD1 Nonsense_Mutation p.Q370* 0.33 TCGA-93-8067-01 6 123377169 123377169 G A CLVS2 Silent p.K298K 0.23 TCGA-93-8067-01 6 132910811 132910811 G A TAAR5 Silent p.F5F 0.25 TCGA-93-8067-01 6 136693704 136693704 G A MAP7 Nonsense_Mutation p.R293* 0.14 TCGA-93-8067-01 6 143081428 143081428 C T HIVEP2 Silent p.Q1999Q 0.22 TCGA-93-8067-01 6 143081661 143081661 C T HIVEP2 Missense_Mutation p.D1922N 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-93-8067-01 6 144508448 144508448 C T STX11 Silent p.F228F 0.29 TCGA-93-8067-01 6 152751714 152751714 C T SYNE1 Missense_Mutation p.R1531K 0.23 benign(0.038) TCGA-93-8067-01 6 154412548 154412548 C A OPRM1 Missense_Mutation p.R462S 0.27 deleterious(0.02) possibly_damaging(0.681) TCGA-93-8067-01 6 17292493 17292493 T A RBM24 3'UTR 0.20 TCGA-93-8067-01 6 29054106 29054106 C T OR2B3 Missense_Mutation p.R307K 0.11 tolerated(0.52) benign(0.005) TCGA-93-8067-01 6 30673794 30673794 G C MDC1 Missense_Mutation p.Q1056E 0.22 deleterious(0.01) possibly_damaging(0.637) TCGA-93-8067-01 6 30681752 30681752 C G MDC1 Silent p.L115L 0.27 TCGA-93-8067-01 6 3127631 3127631 G C BPHL Missense_Mutation p.D123H 0.24 deleterious(0.01) benign(0.325) TCGA-93-8067-01 6 31608003 31608003 G A BAG6 Silent p.L1043L 0.26 TCGA-93-8067-01 6 33245798 33245798 G C B3GALT4 Missense_Mutation p.R201T 0.19 tolerated(0.15) benign(0.017) TCGA-93-8067-01 6 37427352 37427352 G A CMTR1 Silent p.G329G 0.21 TCGA-93-8067-01 6 42196193 42196193 C T TRERF1 Missense_Mutation p.D1165N 0.20 deleterious_low_confidence(0) possibly_damaging(0.555) TCGA-93-8067-01 6 42996856 42996856 G A RRP36 Missense_Mutation p.E224K 0.20 deleterious(0.01) probably_damaging(0.942) TCGA-93-8067-01 6 42996903 42996903 G C RRP36 Missense_Mutation p.L239F 0.23 deleterious(0) probably_damaging(0.999) TCGA-93-8067-01 6 42996920 42996920 G A RRP36 Missense_Mutation p.R245Q 0.25 deleterious(0) probably_damaging(0.972) TCGA-93-8067-01 6 43027907 43027907 C G KLC4 5'UTR 0.19 TCGA-93-8067-01 6 64394072 64394072 C G PHF3 Nonsense_Mutation p.S150* 0.28 TCGA-93-8067-01 6 80656897 80656897 C G ELOVL4 Missense_Mutation p.D34H 0.18 deleterious(0) possibly_damaging(0.528) TCGA-93-8067-01 6 89790788 89790788 C G PNRC1 Missense_Mutation p.H59D 0.33 deleterious_low_confidence(0) possibly_damaging(0.523) TCGA-93-8067-01 7 100283903 100283903 C T GIGYF1 Missense_Mutation p.G283D 0.10 deleterious(0) unknown(0) TCGA-93-8067-01 7 100373441 100373441 A C ZAN Missense_Mutation p.T2059P 0.22 unknown(0) TCGA-93-8067-01 7 100420125 100420125 G A EPHB4 Silent p.L192L 0.29 TCGA-93-8067-01 7 100674431 100674431 G C MUC17 Missense_Mutation p.G38A 0.22 benign(0) TCGA-93-8067-01 7 103270624 103270624 C A RELN Splice_Site p.X822_splice 0.30 TCGA-93-8067-01 7 105429084 105429084 C G ATXN7L1 Missense_Mutation p.Q107H 0.49 tolerated(0.06) possibly_damaging(0.734) TCGA-93-8067-01 7 11076235 11076235 C T PHF14 Missense_Mutation p.S598L 0.21 tolerated(0.11) possibly_damaging(0.604) TCGA-93-8067-01 7 129410232 129410232 G A MIR182 RNA 0.33 TCGA-93-8067-01 7 141490167 141490167 G A TAS2R5 Silent p.L2L 0.32 TCGA-93-8067-01 7 142919810 142919810 C T TAS2R40 Silent p.A213A 0.12 TCGA-93-8067-01 7 1525131 1525131 C A INTS1 Intron 0.53 TCGA-93-8067-01 7 152549306 152549306 C T ACTR3B Silent p.L349L 0.31 TCGA-93-8067-01 7 17915323 17915323 C G SNX13 Missense_Mutation p.Q177H 0.27 tolerated(0.1) possibly_damaging(0.605) TCGA-93-8067-01 7 20198585 20198585 G A MACC1 Missense_Mutation p.H467Y 0.21 deleterious(0.05) benign(0.008) TCGA-93-8067-01 7 21727128 21727128 C T DNAH11 Silent p.I1976I 0.19 TCGA-93-8067-01 7 30795195 30795195 G C INMT Missense_Mutation p.D174H 0.19 tolerated(0.11) probably_damaging(0.955) TCGA-93-8067-01 7 31124942 31124942 G A ADCYAP1R1 Missense_Mutation p.R185H 0.21 deleterious(0) probably_damaging(1) TCGA-93-8067-01 7 44187288 44187288 C A GCK Missense_Mutation p.R276L 0.46 tolerated(0.1) possibly_damaging(0.752) TCGA-93-8067-01 7 5569282 5569282 C T ACTB Missense_Mutation p.D3N 0.24 tolerated_low_confidence(0.09) benign(0.002) TCGA-93-8067-01 7 65705471 65705471 C G TPST1 Missense_Mutation p.T20S 0.18 tolerated_low_confidence(0.35) benign(0.016) TCGA-93-8067-01 7 72658660 72658660 G C GTF2IRD2P1 RNA 0.09 TCGA-93-8067-01 7 87795228 87795228 G C ADAM22 Missense_Mutation p.D720H 0.21 tolerated(0.21) benign(0.062) TCGA-93-8067-01 7 8790884 8790884 C T NXPH1 Missense_Mutation p.R101W 0.18 tolerated(0.11) probably_damaging(0.981) TCGA-93-8067-01 7 95775921 95775921 G A SLC25A13 Nonsense_Mutation p.R468* 0.15 TCGA-93-8067-01 8 101076134 101076134 G A RGS22 Nonsense_Mutation p.Q288* 0.16 TCGA-93-8067-01 8 103663385 103663385 G A KLF10 Missense_Mutation p.T392M 0.06 deleterious(0) probably_damaging(1) TCGA-93-8067-01 8 104778759 104778759 C T RIMS2 Missense_Mutation p.S231L 0.27 tolerated_low_confidence(0.23) benign(0.062) TCGA-93-8067-01 8 113504765 113504765 C - CSMD3 Frame_Shift_Del p.G1744Efs*49 0.25 TCGA-93-8067-01 8 119391929 119391929 C A SAMD12 Silent p.L111L 0.37 TCGA-93-8067-01 8 121457760 121457760 C T MTBP Missense_Mutation p.S17L 0.22 tolerated_low_confidence(0.09) benign(0.001) TCGA-93-8067-01 8 124238837 124238837 G A C8orf76 Missense_Mutation p.S284L 0.26 deleterious(0) possibly_damaging(0.867) TCGA-93-8067-01 8 133953692 133953692 C T TG Missense_Mutation p.S1713L 0.10 tolerated(0.16) benign(0.003) TCGA-93-8067-01 8 145724289 145724289 C T PPP1R16A Intron 0.25 TCGA-93-8067-01 8 145736371 145736371 C G MFSD3 Intron 0.11 TCGA-93-8067-01 8 146067424 146067424 G A ZNF7 Missense_Mutation p.C311Y 0.31 deleterious(0) probably_damaging(1) TCGA-93-8067-01 8 16026165 16026165 G A MSR1 Silent p.F144F 0.13 TCGA-93-8067-01 8 27321177 27321177 G A CHRNA2 Silent p.I261I 0.13 TCGA-93-8067-01 8 28321234 28321234 C G FBXO16 Missense_Mutation p.E79D 0.18 tolerated(0.44) benign(0.005) TCGA-93-8067-01 8 38832189 38832189 C T HTRA4 Missense_Mutation p.A136V 0.45 deleterious(0.05) benign(0.332) TCGA-93-8067-01 8 41394734 41394734 G A GINS4 Silent p.L73L 0.51 TCGA-93-8067-01 8 41399411 41399411 G A GINS4 Missense_Mutation p.E190K 0.22 deleterious(0.03) benign(0.051) TCGA-93-8067-01 8 48826610 48826610 C A PRKDC Nonsense_Mutation p.E878* 0.34 TCGA-93-8067-01 8 48845627 48845627 C T PRKDC Missense_Mutation p.E577K 0.12 benign(0.187) TCGA-93-8067-01 8 54163485 54163485 C G OPRK1 Missense_Mutation p.S38T 0.13 tolerated(0.45) benign(0.011) TCGA-93-8067-01 8 75156954 75156954 C A JPH1 Missense_Mutation p.G572V 0.41 tolerated(0.61) benign(0.003) TCGA-93-8067-01 8 86039056 86039056 C T LRRCC1 Silent p.L469L 0.15 TCGA-93-8067-01 8 86057636 86057636 G A LRRCC1 Missense_Mutation p.E997K 0.13 deleterious(0) probably_damaging(0.999) TCGA-93-8067-01 8 93088269 93088269 G C RUNX1T1 Intron 0.17 TCGA-93-8067-01 8 99440549 99440549 C T KCNS2 Silent p.F114F 0.20 TCGA-93-8067-01 9 102744965 102744965 C G ERP44 Missense_Mutation p.E384Q 0.17 deleterious(0.01) possibly_damaging(0.507) TCGA-93-8067-01 9 113212469 113212469 G T SVEP1 Missense_Mutation p.Q1325K 0.43 benign(0.146) TCGA-93-8067-01 9 115095884 115095884 G C PTBP3 5'Flank 0.22 TCGA-93-8067-01 9 120476532 120476532 A G TLR4 Missense_Mutation p.Y709C 0.35 deleterious(0.01) probably_damaging(1) TCGA-93-8067-01 9 124976324 124976324 C G LHX6 Missense_Mutation p.D270H 0.22 deleterious(0) possibly_damaging(0.812) TCGA-93-8067-01 9 125273662 125273662 C G OR1J2 Silent p.L194L 0.20 TCGA-93-8067-01 9 127265451 127265451 C G NR5A1 Missense_Mutation p.E51Q 0.25 tolerated(0.08) possibly_damaging(0.51) TCGA-93-8067-01 9 130965893 130965893 C G DNM1 Silent p.L48L 0.14 TCGA-93-8067-01 9 132375865 132375865 C T C9orf50 Missense_Mutation p.V298I 0.07 tolerated(1) benign(0) TCGA-93-8067-01 9 132630324 132630324 A G USP20 Missense_Mutation p.H244R 0.19 deleterious(0) probably_damaging(0.997) TCGA-93-8067-01 9 133760560 133760560 G T ABL1 Silent p.P980P 0.24 TCGA-93-8067-01 9 135203294 135203294 C T SETX Missense_Mutation p.E1231K 0.13 tolerated(1) benign(0) TCGA-93-8067-01 9 135203861 135203861 C G SETX Missense_Mutation p.E1042Q 0.21 deleterious(0.04) benign(0.157) TCGA-93-8067-01 9 139621406 139621406 G A FAM69B 3'Flank 0.18 TCGA-93-8067-01 9 139637401 139637401 C G LCN10 5'UTR 0.26 TCGA-93-8067-01 9 139740121 139740121 G C C9orf172 Missense_Mutation p.D419H 0.21 tolerated(0.12) possibly_damaging(0.532) TCGA-93-8067-01 9 139741083 139741083 C G C9orf172 Missense_Mutation p.I739M 0.14 deleterious(0.04) possibly_damaging(0.692) TCGA-93-8067-01 9 140115059 140115059 G A RNF208 Silent p.A202A 0.09 TCGA-93-8067-01 9 14722167 14722167 G T CER1 Missense_Mutation p.S168R 0.25 deleterious(0.03) benign(0.139) TCGA-93-8067-01 9 19450460 19450460 C G ACER2 Missense_Mutation p.I218M 0.26 deleterious(0.05) probably_damaging(0.998) TCGA-93-8067-01 9 21334683 21334683 C T KLHL9 Missense_Mutation p.G59E 0.36 deleterious(0.02) benign(0.004) TCGA-93-8067-01 9 21971108 21971108 C T CDKN2A Missense_Mutation p.D84N 0.21 deleterious(0) probably_damaging(1) TCGA-93-8067-01 9 33973196 33973196 G C UBAP2 Nonsense_Mutation p.S187* 0.22 TCGA-93-8067-01 9 35061014 35061014 G - VCP Frame_Shift_Del p.R453Gfs*4 0.20 TCGA-93-8067-01 9 35076490 35076490 G T FANCG Missense_Mutation p.H339N 0.21 tolerated(0.1) benign(0.254) TCGA-93-8067-01 9 37442082 37442082 G C ZBTB5 Nonsense_Mutation p.S156* 0.09 TCGA-93-8067-01 9 6007726 6007726 G A KIAA2026 Missense_Mutation p.P21L 0.20 tolerated_low_confidence(0.15) unknown(0) TCGA-93-8067-01 9 6252872 6252872 C T IL33 Missense_Mutation p.S117L 0.19 tolerated(0.21) benign(0.004) TCGA-93-8067-01 9 713094 713094 G A KANK1 Missense_Mutation p.M776I 0.13 tolerated(0.13) benign(0.027) TCGA-93-8067-01 9 71628259 71628259 C T PRKACG Silent p.K250K 0.07 TCGA-93-8067-01 9 74332886 74332886 C G TMEM2 Missense_Mutation p.D793H 0.30 deleterious(0) possibly_damaging(0.459) TCGA-93-8067-01 9 86530305 86530305 G T KIF27 Missense_Mutation p.L68I 0.21 deleterious(0) probably_damaging(1) TCGA-93-8067-01 9 87342834 87342834 G A NTRK2 Silent p.Q373Q 0.14 TCGA-93-8067-01 X 101382089 101382089 G A TCEAL2 Missense_Mutation p.R96K 0.62 tolerated(1) benign(0.22) TCGA-93-8067-01 X 101615556 101615556 T A NXF2B Missense_Mutation p.K616M 0.17 deleterious(0) probably_damaging(0.992) TCGA-93-8067-01 X 105181572 105181572 C T NRK Missense_Mutation p.S1267L 0.57 deleterious(0) probably_damaging(0.99) TCGA-93-8067-01 X 11204541 11204541 G A ARHGAP6 Missense_Mutation p.S363L 0.50 deleterious(0) probably_damaging(0.996) TCGA-93-8067-01 X 128926602 128926602 G A SASH3 Splice_Site p.X198_splice 0.51 TCGA-93-8067-01 X 140969369 140969369 C G MAGEC3 Missense_Mutation p.F232L 0.43 tolerated(0.55) benign(0.418) TCGA-93-8067-01 X 153458901 153458901 G C OPN1MW Silent p.V249V 0.50 TCGA-93-8067-01 X 3235275 3235275 C G MXRA5 Silent p.T2149T 0.67 TCGA-93-8067-01 X 34962790 34962790 G T FAM47B Missense_Mutation p.K614N 0.52 tolerated(0.08) benign(0.009) TCGA-93-8067-01 X 37850467 37850467 G A CXorf27 3'UTR 0.33 TCGA-93-8067-01 X 50054322 50054322 C G CCNB3 Silent p.P1051P 0.41 TCGA-93-8067-01 X 54209131 54209131 G C FAM120C Silent p.L167L 0.43 TCGA-93-8067-01 X 54472809 54472809 G A FGD1 Silent p.F873F 0.71 TCGA-93-8067-01 X 63410529 63410529 G A AMER1 Missense_Mutation p.P880S 0.07 tolerated(0.14) benign(0.011) TCGA-93-8067-01 Y 14838715 14838715 C T USP9Y Nonsense_Mutation p.R216* 0.30 TCGA-93-A4JN-01 10 108338891 108338891 G A SORCS1 Missense_Mutation p.P1164S 0.30 tolerated(0.44) benign(0.172) TCGA-93-A4JN-01 10 125558698 125558698 G C CPXM2 Missense_Mutation p.S224C 0.18 deleterious(0) probably_damaging(0.983) TCGA-93-A4JN-01 10 15210621 15210621 G A NMT2 5'UTR 0.43 TCGA-93-A4JN-01 11 108199921 108199921 A C ATM Missense_Mutation p.K2421N 0.22 tolerated(0.05) possibly_damaging(0.588) TCGA-93-A4JN-01 11 113813888 113813888 G A HTR3B Missense_Mutation p.R294Q 0.21 tolerated(0.15) benign(0.099) TCGA-93-A4JN-01 11 116691894 116691894 C A APOA4 Missense_Mutation p.G294W 0.17 deleterious(0.01) probably_damaging(0.96) TCGA-93-A4JN-01 11 124413308 124413308 C T OR8B12 Silent p.L81L 0.05 TCGA-93-A4JN-01 11 18159273 18159273 C T MRGPRX3 Missense_Mutation p.T175M 0.17 tolerated(0.1) benign(0.233) TCGA-93-A4JN-01 11 5153684 5153684 A T OR52A5 Silent p.I63I 0.18 TCGA-93-A4JN-01 11 6048630 6048630 G T OR56A1 Missense_Mutation p.P102H 0.21 tolerated(0.06) benign(0.172) TCGA-93-A4JN-01 11 71725334 71725341 AGACCACG T NUMA1 Frame_Shift_Del p.G1071Rfs*5 0.09 TCGA-93-A4JN-01 12 10319475 10319475 G T OLR1 Missense_Mutation p.A87D 0.24 tolerated(0.06) benign(0.172) TCGA-93-A4JN-01 12 29469879 29469879 C G FAR2 Missense_Mutation p.A354G 0.03 tolerated(0.33) benign(0.241) TCGA-93-A4JN-01 12 64587517 64587517 G A C12orf66 3'UTR 0.38 TCGA-93-A4JN-01 13 113770046 113770046 C A F7 Missense_Mutation p.T168N 0.30 tolerated(0.32) benign(0.13) TCGA-93-A4JN-01 13 48951075 48951075 G T RB1 Nonsense_Mutation p.E413* 0.32 TCGA-93-A4JN-01 13 88329142 88329142 C T SLITRK5 Missense_Mutation p.T500I 0.16 deleterious(0) probably_damaging(0.975) TCGA-93-A4JN-01 14 20216100 20216100 C T OR4Q3 Missense_Mutation p.P172S 0.11 deleterious(0.01) possibly_damaging(0.815) TCGA-93-A4JN-01 14 52781546 52781546 G C PTGER2 Missense_Mutation p.A94P 0.23 deleterious(0.04) probably_damaging(0.918) TCGA-93-A4JN-01 14 75248769 75248769 G - YLPM1 Frame_Shift_Del p.V675Cfs*24 0.20 TCGA-93-A4JN-01 14 93399080 93399080 C G CHGA Missense_Mutation p.R392G 0.43 deleterious(0) benign(0.383) TCGA-93-A4JN-01 14 94394961 94394961 T A FAM181A Silent p.A172A 0.33 TCGA-93-A4JN-01 14 94417427 94417427 G T ASB2 Silent p.S266S 0.25 TCGA-93-A4JN-01 14 94417428 94417428 G T ASB2 Missense_Mutation p.S266Y 0.25 tolerated(0.48) benign(0.392) TCGA-93-A4JN-01 14 94914545 94914545 G T SERPINA11 Nonsense_Mutation p.Y189* 0.29 TCGA-93-A4JN-01 15 33925215 33925215 C T RYR3 Missense_Mutation p.P978L 0.08 benign(0.05) TCGA-93-A4JN-01 15 72311436 72311436 T A MYO9A Missense_Mutation p.I367L 0.35 tolerated(0.35) benign(0.055) TCGA-93-A4JN-01 16 3367623 3367623 A G ZNF75A Silent p.K215K 0.20 TCGA-93-A4JN-01 16 46638315 46638315 G A SHCBP1 Silent p.L250L 0.03 TCGA-93-A4JN-01 16 47462785 47462785 C T ITFG1 Silent p.L195L 0.26 TCGA-93-A4JN-01 16 67409314 67409314 C T LRRC36 Silent p.L553L 0.29 TCGA-93-A4JN-01 17 17122454 17122454 G A FLCN Missense_Mutation p.P314L 0.12 tolerated(0.21) benign(0) TCGA-93-A4JN-01 17 27982579 27982579 C T SSH2 Missense_Mutation p.G333E 0.10 deleterious(0) probably_damaging(0.993) TCGA-93-A4JN-01 17 7577082 7577082 C G TP53 Missense_Mutation p.E286Q 0.36 deleterious(0) probably_damaging(0.98) TCGA-93-A4JN-01 18 31323889 31323889 G A ASXL3 Silent p.L1359L 0.09 TCGA-93-A4JN-01 18 7049238 7049238 T C LAMA1 Missense_Mutation p.N203D 0.21 deleterious(0) probably_damaging(1) TCGA-93-A4JN-01 19 11447857 11447857 C G RAB3D Silent p.L73L 0.11 TCGA-93-A4JN-01 19 32845768 32845768 G A ZNF507 Missense_Mutation p.A678T 0.12 deleterious(0) probably_damaging(0.989) TCGA-93-A4JN-01 19 35850496 35850496 T G FFAR3 Missense_Mutation p.L235R 0.06 deleterious(0.01) probably_damaging(0.964) TCGA-93-A4JN-01 19 38976466 38976466 G A RYR1 Missense_Mutation p.R1724H 0.28 probably_damaging(0.976) TCGA-93-A4JN-01 19 40408679 40408679 C T FCGBP Missense_Mutation p.C1387Y 0.13 probably_damaging(0.983) TCGA-93-A4JN-01 19 43411107 43411107 C A PSG6 Nonsense_Mutation p.E403* 0.06 TCGA-93-A4JN-01 19 43411811 43411811 C T PSG6 Missense_Mutation p.R301K 0.05 tolerated(1) benign(0.107) TCGA-93-A4JN-01 19 43411957 43411957 C G PSG6 Missense_Mutation p.E252D 0.05 tolerated(0.31) benign(0.168) TCGA-93-A4JN-01 19 55085284 55085284 C A LILRA2 Intron 0.29 TCGA-93-A4JN-01 19 55816195 55816195 G A BRSK1 Missense_Mutation p.G542S 0.24 tolerated(0.61) possibly_damaging(0.862) TCGA-93-A4JN-01 1 152083666 152083666 T C TCHH Missense_Mutation p.H676R 0.06 unknown(0) TCGA-93-A4JN-01 1 152284256 152284256 G T FLG Missense_Mutation p.R1036S 0.24 possibly_damaging(0.655) TCGA-93-A4JN-01 1 174983830 174983830 G A MRPS14 Missense_Mutation p.S121F 0.07 deleterious(0) probably_damaging(0.997) TCGA-93-A4JN-01 1 175323572 175323572 G C TNR Missense_Mutation p.Q1113E 0.23 tolerated(0.31) possibly_damaging(0.78) TCGA-93-A4JN-01 1 212988451 212988451 A G TATDN3 Missense_Mutation p.N267D 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-93-A4JN-01 1 216251524 216251524 C T USH2A Missense_Mutation p.G1827R 0.36 benign(0.009) TCGA-93-A4JN-01 1 220835284 220835284 C T MARK1 Nonsense_Mutation p.R722* 0.27 TCGA-93-A4JN-01 1 51755688 51755688 G A TTC39A Silent p.S498S 0.27 TCGA-93-A4JN-01 20 42694450 42694450 C A TOX2 Silent p.A353A 0.25 TCGA-93-A4JN-01 20 50241784 50241784 G A ATP9A Silent p.L655L 0.29 TCGA-93-A4JN-01 20 58330363 58330363 C T PHACTR3 Missense_Mutation p.T162M 0.36 tolerated(0.09) benign(0.003) TCGA-93-A4JN-01 21 45522663 45522663 C T TRAPPC10 Silent p.V1117V 0.28 TCGA-93-A4JN-01 21 46086825 46086825 G A KRTAP12-2 5'UTR 0.39 TCGA-93-A4JN-01 22 26829569 26829569 C A ASPHD2 5'UTR 0.19 TCGA-93-A4JN-01 2 130832471 130832471 C GT POTEF Frame_Shift_Ins p.V859Rfs*9 0.09 TCGA-93-A4JN-01 2 179594052 179594052 G A TTN Silent p.G6277G 0.17 TCGA-93-A4JN-01 2 1926208 1926208 C T MYT1L Missense_Mutation p.A445T 0.06 tolerated(0.08) possibly_damaging(0.646) TCGA-93-A4JN-01 2 200213792 200213792 C T SATB2 Missense_Mutation p.E269K 0.09 tolerated(0.12) benign(0.043) TCGA-93-A4JN-01 2 27722063 27722063 G A GCKR Silent p.E161E 0.08 TCGA-93-A4JN-01 2 32658783 32658783 A G BIRC6 Missense_Mutation p.K1107R 0.26 probably_damaging(0.98) TCGA-93-A4JN-01 2 63101530 63101530 G A EHBP1 Missense_Mutation p.V385I 0.27 tolerated(0.2) benign(0.002) TCGA-93-A4JN-01 3 120347066 120347066 A G HGD 3'UTR 0.37 TCGA-93-A4JN-01 3 12854848 12854848 G C CAND2 Missense_Mutation p.E323Q 0.22 tolerated(0.2) benign(0.279) TCGA-93-A4JN-01 3 47447462 47447462 C A PTPN23 Silent p.R158R 0.44 TCGA-93-A4JN-01 4 73984476 73984476 C T ANKRD17 Missense_Mutation p.V1373M 0.18 possibly_damaging(0.796) TCGA-93-A4JN-01 4 81122481 81122481 T C PRDM8 Missense_Mutation p.L86P 0.22 tolerated(0.08) probably_damaging(0.979) TCGA-93-A4JN-01 4 88967857 88967857 G T PKD2 Missense_Mutation p.K461N 0.18 deleterious(0) probably_damaging(0.932) TCGA-93-A4JN-01 5 10465107 10465107 C G ROPN1L 3'UTR 0.17 TCGA-93-A4JN-01 5 127666324 127666324 G A FBN2 Missense_Mutation p.P1429L 0.20 tolerated(0.08) probably_damaging(0.918) TCGA-93-A4JN-01 5 140229134 140229134 A C PCDHA9 Missense_Mutation p.I352L 0.04 tolerated_low_confidence(0.22) benign(0.001) TCGA-93-A4JN-01 5 178310682 178310682 A G ZNF354B Missense_Mutation p.Y410C 0.16 deleterious(0) probably_damaging(0.991) TCGA-93-A4JN-01 6 31507049 31507049 G A DDX39B Nonsense_Mutation p.Q72* 0.19 TCGA-93-A4JN-01 7 100678914 100678914 C T MUC17 Missense_Mutation p.T1406M 0.37 unknown(0) TCGA-93-A4JN-01 7 148876304 148876304 G A ZNF398 Missense_Mutation p.R447K 0.30 deleterious(0.03) possibly_damaging(0.454) TCGA-93-A4JN-01 7 149133780 149133780 C A ZNF777 Nonsense_Mutation p.E409* 0.15 TCGA-93-A4JN-01 7 20691082 20691082 C T ABCB5 Missense_Mutation p.R458W 0.22 deleterious(0.01) possibly_damaging(0.828) TCGA-93-A4JN-01 8 140630606 140630606 G A KCNK9 Silent p.S340S 0.23 TCGA-93-A4JN-01 8 17581258 17581258 C T MTUS1 Missense_Mutation p.S791N 0.09 tolerated(0.27) benign(0.022) TCGA-93-A4JN-01 8 17918915 17918915 G T ASAH1 Silent p.L268L 0.32 TCGA-93-A4JN-01 8 21771068 21771068 C G DOK2 Missense_Mutation p.Q15H 0.12 tolerated(0.08) possibly_damaging(0.879) TCGA-93-A4JN-01 8 35648014 35648014 T C UNC5D Missense_Mutation p.L932P 0.10 deleterious(0.04) benign(0.329) TCGA-93-A4JN-01 8 55542774 55542774 T C RP1 Missense_Mutation p.V2111A 0.11 tolerated(0.06) benign(0.036) TCGA-93-A4JN-01 9 107266615 107266615 G C OR13F1 Missense_Mutation p.Q24H 0.09 deleterious(0.01) benign(0.252) TCGA-93-A4JN-01 9 119903647 119903647 T A ASTN2 Intron 0.22 TCGA-93-A4JN-01 9 130670612 130670612 T C ST6GALNAC4 3'UTR 0.20 TCGA-93-A4JN-01 9 133760589 133760589 C T ABL1 Missense_Mutation p.P990L 0.11 tolerated_low_confidence(0.12) benign(0.419) TCGA-93-A4JN-01 9 23704937 23704937 T C ELAVL2 Missense_Mutation p.I156V 0.05 tolerated(0.33) benign(0.078) TCGA-93-A4JN-01 9 32635443 32635443 G A TAF1L Silent p.I45I 0.15 TCGA-93-A4JN-01 9 32635611 32635611 G A TAF1L 5'UTR 0.26 TCGA-93-A4JN-01 9 95163461 95163461 C A OGN Nonsense_Mutation p.E61* 0.16 TCGA-93-A4JN-01 9 98703772 98703774 TGT - ERCC6L2 In_Frame_Del p.V610del 0.21 TCGA-93-A4JN-01 9 99580644 99580644 C G ZNF782 Missense_Mutation p.R554T 0.21 deleterious(0.02) benign(0.398) TCGA-93-A4JN-01 X 119066179 119066179 C G NKAP Silent p.S246S 0.33 TCGA-93-A4JN-01 X 26212442 26212442 G A MAGEB6 Missense_Mutation p.G160D 0.30 tolerated(0.11) benign(0.005) TCGA-93-A4JN-01 X 34148211 34148211 C T FAM47A Missense_Mutation p.V729I 0.30 tolerated(1) benign(0.075) TCGA-93-A4JN-01 X 83402034 83402034 C T RPS6KA6 Missense_Mutation p.D125N 0.32 tolerated(0.35) benign(0.072) TCGA-93-A4JO-01 10 31815708 31815708 A G ZEB1 Missense_Mutation p.K965R 0.09 deleterious(0) possibly_damaging(0.846) TCGA-93-A4JO-01 10 75276186 75276186 C A USP54 Missense_Mutation p.G1333V 0.10 deleterious(0.02) benign(0.014) TCGA-93-A4JO-01 11 102395682 102395682 C G MMP7 Missense_Mutation p.D200H 0.12 deleterious(0.01) probably_damaging(0.964) TCGA-93-A4JO-01 11 121500348 121500348 G T SORL1 3'UTR 0.18 TCGA-93-A4JO-01 11 44075033 44075033 G C ACCSL Missense_Mutation p.M342I 0.08 tolerated(0.29) benign(0.011) TCGA-93-A4JO-01 11 55681358 55681358 C A OR5W2 Missense_Mutation p.R234M 0.07 deleterious(0) probably_damaging(0.968) TCGA-93-A4JO-01 11 60565959 60565959 G A MS4A10 Missense_Mutation p.G232S 0.06 tolerated(0.09) benign(0.037) TCGA-93-A4JO-01 11 6651238 6651238 G C DCHS1 Nonsense_Mutation p.S1596* 0.08 TCGA-93-A4JO-01 11 67075705 67075705 G C SSH3 Missense_Mutation p.D316H 0.14 deleterious(0) probably_damaging(1) TCGA-93-A4JO-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.28 deleterious(0) benign(0.361) TCGA-93-A4JO-01 12 56868884 56868884 C T GLS2 Missense_Mutation p.E314K 0.09 deleterious(0) probably_damaging(0.999) TCGA-93-A4JO-01 12 97052065 97052065 A T C12orf55 Nonsense_Mutation p.K1801* 0.19 TCGA-93-A4JO-01 13 20221156 20221156 G C MPHOSPH8 Missense_Mutation p.D315H 0.09 deleterious_low_confidence(0) possibly_damaging(0.868) TCGA-93-A4JO-01 13 97639923 97639923 G C OXGR1 Missense_Mutation p.L31V 0.07 tolerated(0.17) benign(0.051) TCGA-93-A4JO-01 14 23344728 23344728 C T LRP10 Missense_Mutation p.P191S 0.05 tolerated(0.29) benign(0.004) TCGA-93-A4JO-01 14 67940036 67940036 G A TMEM229B 3'UTR 0.11 TCGA-93-A4JO-01 16 24802337 24802337 T C TNRC6A Missense_Mutation p.W792R 0.15 deleterious(0) probably_damaging(0.998) TCGA-93-A4JO-01 16 68156624 68156624 G C NFATC3 Missense_Mutation p.E280Q 0.09 tolerated(0.08) benign(0.405) TCGA-93-A4JO-01 16 85813344 85813344 C G EMC8 Missense_Mutation p.E201D 0.05 tolerated(0.16) benign(0.022) TCGA-93-A4JO-01 17 35687329 35687329 G A ACACA Missense_Mutation p.P41L 0.15 deleterious_low_confidence(0.05) benign(0.015) TCGA-93-A4JO-01 17 40696049 40696049 G A NAGLU Nonsense_Mutation p.W675* 0.16 TCGA-93-A4JO-01 17 59489802 59489802 G T C17orf82 Nonsense_Mutation p.E156* 0.32 TCGA-93-A4JO-01 17 5998505 5998505 G A WSCD1 Missense_Mutation p.V271M 0.06 tolerated(1) benign(0.026) TCGA-93-A4JO-01 17 63221242 63221242 C G RGS9 Silent p.P510P 0.06 TCGA-93-A4JO-01 17 7578507 7578507 G C TP53 Missense_Mutation p.C141W 0.09 deleterious(0) probably_damaging(1) TCGA-93-A4JO-01 18 21104096 21104096 C - C18orf8 Frame_Shift_Del p.P322Lfs*4 0.12 TCGA-93-A4JO-01 19 11917083 11917083 T C ZNF491 Silent p.C105C 0.14 TCGA-93-A4JO-01 19 12542505 12542505 T A ZNF443 Missense_Mutation p.R161W 0.09 deleterious(0) possibly_damaging(0.811) TCGA-93-A4JO-01 19 40901155 40901155 G A PRX Missense_Mutation p.A1035V 0.06 tolerated(0.42) possibly_damaging(0.682) TCGA-93-A4JO-01 19 51961413 51961413 C T SIGLEC8 Missense_Mutation p.A77T 0.05 tolerated(0.09) benign(0.052) TCGA-93-A4JO-01 19 55363610 55363610 C T KIR3DL2 Silent p.F76F 0.21 TCGA-93-A4JO-01 1 109743471 109743471 C T KIAA1324 Silent p.I974I 0.07 TCGA-93-A4JO-01 1 241798090 241798090 T C CHML Missense_Mutation p.K327E 0.05 tolerated(0.07) benign(0.12) TCGA-93-A4JO-01 1 248023997 248023997 A C TRIM58 Missense_Mutation p.K167Q 0.06 deleterious(0) benign(0.405) TCGA-93-A4JO-01 1 86822223 86822223 C T ODF2L Silent p.A474A 0.08 TCGA-93-A4JO-01 1 89524623 89524623 A C GBP1 Missense_Mutation p.F178V 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-93-A4JO-01 20 30053417 30053417 A C DEFB124 Silent p.T36T 0.18 TCGA-93-A4JO-01 20 44049038 44049038 G A PIGT Missense_Mutation p.R279Q 0.10 tolerated(0.11) benign(0.015) TCGA-93-A4JO-01 22 20073592 20073592 C T DGCR8 Missense_Mutation p.P36S 0.09 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-93-A4JO-01 22 23077441 23077441 G C IGLV2-18 Missense_Mutation p.S73T 0.05 tolerated_low_confidence(0.15) benign(0.013) TCGA-93-A4JO-01 2 160697317 160697317 G T LY75-CD302 Missense_Mutation p.P1144T 0.10 tolerated(0.53) benign(0.057) TCGA-93-A4JO-01 2 168105190 168105190 C A XIRP2 Missense_Mutation p.P2430T 0.07 benign(0.311) TCGA-93-A4JO-01 2 179403592 179403592 G A TTN Intron 0.20 TCGA-93-A4JO-01 2 179542882 179542882 G C TTN Missense_Mutation p.P11322A 0.12 TCGA-93-A4JO-01 2 179542910 179542910 G A TTN Silent p.I11312I 0.12 TCGA-93-A4JO-01 3 113207814 113207814 G A SPICE1 Nonsense_Mutation p.Q197* 0.10 TCGA-93-A4JO-01 3 172062040 172062040 G C FNDC3B Missense_Mutation p.D748H 0.07 deleterious(0.02) possibly_damaging(0.796) TCGA-93-A4JO-01 3 183823716 183823716 T C HTR3E Missense_Mutation p.M321T 0.05 tolerated(0.05) benign(0.008) TCGA-93-A4JO-01 3 52256845 52256845 G A TLR9 Missense_Mutation p.S650L 0.22 deleterious(0.01) possibly_damaging(0.778) TCGA-93-A4JO-01 4 160235830 160235830 A T RAPGEF2 Missense_Mutation p.I94F 0.11 tolerated(0.67) possibly_damaging(0.512) TCGA-93-A4JO-01 4 42509121 42509121 T C ATP8A1 Silent p.Q666Q 0.14 TCGA-93-A4JO-01 4 74964334 74964334 C A CXCL2 Nonsense_Mutation p.E98* 0.07 TCGA-93-A4JO-01 4 75248499 75248499 A C EREG Missense_Mutation p.Y139S 0.08 deleterious(0) probably_damaging(0.988) TCGA-93-A4JO-01 5 15616177 15616177 C T FBXL7 Silent p.S41S 0.12 TCGA-93-A4JO-01 5 158747501 158747501 G A IL12B Silent p.C170C 0.18 TCGA-93-A4JO-01 6 36291231 36291231 G A C6orf222 Missense_Mutation p.S437L 0.05 deleterious(0.02) benign(0.001) TCGA-93-A4JO-01 6 83848079 83848079 C G DOPEY1 Missense_Mutation p.P1440A 0.06 tolerated(0.41) benign(0.04) TCGA-93-A4JO-01 7 128355590 128355590 C A FAM71F1 Missense_Mutation p.A32D 0.14 deleterious_low_confidence(0) possibly_damaging(0.448) TCGA-93-A4JO-01 7 45005368 45005368 G A MYO1G Missense_Mutation p.A750V 0.06 tolerated(0.2) benign(0.242) TCGA-93-A4JO-01 8 105361387 105361387 A T DCSTAMP Missense_Mutation p.T203S 0.06 tolerated(0.17) benign(0.045) TCGA-93-A4JO-01 8 2976043 2976043 T C CSMD1 Missense_Mutation p.Y2103C 0.15 probably_damaging(0.978) TCGA-93-A4JO-01 8 72975148 72975148 G A TRPA1 Silent p.H231H 0.09 TCGA-93-A4JO-01 9 133961066 133961066 A T LAMC3 Nonsense_Mutation p.K1396* 0.14 TCGA-93-A4JO-01 9 86591967 86591967 C G HNRNPK Splice_Site p.X53_splice 0.08 TCGA-93-A4JO-01 X 129360821 129360821 T A ZNF280C Missense_Mutation p.H436L 0.20 deleterious(0) probably_damaging(1) TCGA-93-A4JO-01 X 135308164 135308164 G T MAP7D3 Missense_Mutation p.D681E 0.20 deleterious(0.05) possibly_damaging(0.864) TCGA-93-A4JP-01 10 13160919 13160919 G A OPTN Missense_Mutation p.D220N 0.10 tolerated(0.1) benign(0.001) TCGA-93-A4JP-01 10 44112221 44112221 T C ZNF485 Missense_Mutation p.C244R 0.09 deleterious(0) probably_damaging(1) TCGA-93-A4JP-01 10 82185739 82185739 G A FAM213A Missense_Mutation p.G130R 0.07 deleterious(0) probably_damaging(0.992) TCGA-93-A4JP-01 11 114270791 114270791 C T C11orf71 Missense_Mutation p.R88K 0.06 deleterious_low_confidence(0.01) probably_damaging(0.971) TCGA-93-A4JP-01 11 117052141 117052141 G - SIDT2 Frame_Shift_Del p.V65Cfs*5 0.16 TCGA-93-A4JP-01 11 563294 563294 G A RASSF7 Missense_Mutation p.D310N 0.12 deleterious(0.03) benign(0.205) TCGA-93-A4JP-01 11 62287121 62287121 A T AHNAK Nonsense_Mutation p.L4923* 0.06 TCGA-93-A4JP-01 11 88300512 88300512 G A GRM5 Missense_Mutation p.T780M 0.06 deleterious(0) probably_damaging(1) TCGA-93-A4JP-01 12 109017169 109017169 G T SELPLG Silent p.V321V 0.09 TCGA-93-A4JP-01 12 123430750 123430750 T A ABCB9 Missense_Mutation p.Q358L 0.09 deleterious(0) probably_damaging(0.994) TCGA-93-A4JP-01 12 15262209 15262209 G A RERG Silent p.Y145Y 0.04 TCGA-93-A4JP-01 12 52649908 52649908 C T KRT121P RNA 0.10 TCGA-93-A4JP-01 12 62888910 62888910 G A MON2 Missense_Mutation p.D140N 0.11 tolerated(0.14) benign(0.025) TCGA-93-A4JP-01 12 85260938 85260938 C G SLC6A15 Silent p.L510L 0.07 TCGA-93-A4JP-01 13 48941739 48941739 G T RB1 Missense_Mutation p.S350I 0.15 tolerated(0.26) benign(0.312) TCGA-93-A4JP-01 14 20444046 20444046 C A OR4K15 Silent p.A123A 0.05 TCGA-93-A4JP-01 14 20665896 20665896 C A OR11G2 Silent p.G134G 0.09 TCGA-93-A4JP-01 14 64194057 64194057 G A SGPP1 Silent p.Y202Y 0.05 TCGA-93-A4JP-01 14 65009291 65009291 A G HSPA2 Missense_Mutation p.D575G 0.07 deleterious_low_confidence(0.04) benign(0.392) TCGA-93-A4JP-01 14 71576524 71576524 T A PCNX Missense_Mutation p.W2300R 0.07 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-93-A4JP-01 14 94394887 94394887 G A FAM181A Missense_Mutation p.D148N 0.08 tolerated(0.07) benign(0.002) TCGA-93-A4JP-01 15 81225672 81225672 C A KIAA1199 Missense_Mutation p.D960E 0.09 deleterious(0) probably_damaging(0.998) TCGA-93-A4JP-01 16 2026955 2026955 A T TBL3 Missense_Mutation p.H478L 0.13 deleterious(0) probably_damaging(0.989) TCGA-93-A4JP-01 16 27689060 27689060 G T KIAA0556 Missense_Mutation p.R184I 0.07 deleterious(0) possibly_damaging(0.622) TCGA-93-A4JP-01 16 56716449 56716449 C T MT1X 5'UTR 0.08 TCGA-93-A4JP-01 16 837107 837107 C G RPUSD1 Missense_Mutation p.A127P 0.12 tolerated(0.07) benign(0.035) TCGA-93-A4JP-01 16 9196940 9196940 G T C16orf72 Missense_Mutation p.R136I 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-93-A4JP-01 17 30677262 30677262 G A ZNF207 5'UTR 0.07 TCGA-93-A4JP-01 17 40317619 40317619 C T KCNH4 Missense_Mutation p.D645N 0.08 tolerated(0.1) benign(0.227) TCGA-93-A4JP-01 17 41222993 41222993 G A BRCA1 Silent p.V1667V 0.08 TCGA-93-A4JP-01 17 4510772 4510772 G A SMTNL2 Missense_Mutation p.R459H 0.07 tolerated(0.26) benign(0.007) TCGA-93-A4JP-01 17 5280513 5280513 A C RABEP1 Missense_Mutation p.K710Q 0.12 tolerated(0.09) probably_damaging(0.997) TCGA-93-A4JP-01 17 62758637 62758637 C G hsa-mir-6080 RNA 0.07 TCGA-93-A4JP-01 17 7577509 7577509 C A TP53 Nonsense_Mutation p.E258* 0.18 TCGA-93-A4JP-01 19 17450397 17450397 C T GTPBP3 Silent p.R353R 0.14 TCGA-93-A4JP-01 19 40901333 40901333 C A PRX Nonsense_Mutation p.E976* 0.19 TCGA-93-A4JP-01 19 40902245 40902245 C G PRX Missense_Mutation p.E672Q 0.21 deleterious(0.03) possibly_damaging(0.607) TCGA-93-A4JP-01 19 40902269 40902269 C T PRX Missense_Mutation p.E664K 0.18 tolerated(0.09) possibly_damaging(0.486) TCGA-93-A4JP-01 19 40903848 40903848 C G PRX Missense_Mutation p.K137N 0.25 deleterious(0.01) possibly_damaging(0.607) TCGA-93-A4JP-01 19 40904689 40904689 C T PRX Silent p.E73E 0.20 TCGA-93-A4JP-01 19 40904710 40904710 C T PRX Silent p.L66L 0.20 TCGA-93-A4JP-01 19 45885828 45885828 G A PPP1R13L Missense_Mutation p.A802V 0.06 deleterious(0.02) possibly_damaging(0.734) TCGA-93-A4JP-01 19 47422058 47422058 C T ARHGAP35 Silent p.F42F 0.06 TCGA-93-A4JP-01 1 167815495 167815495 G T ADCY10 Missense_Mutation p.S815Y 0.04 deleterious(0) possibly_damaging(0.498) TCGA-93-A4JP-01 1 196762692 196762692 C T CFHR3 3'UTR 0.09 TCGA-93-A4JP-01 1 197071325 197071325 C G ASPM Missense_Mutation p.M2352I 0.05 tolerated(0.69) benign(0.006) TCGA-93-A4JP-01 1 228402058 228402058 A T OBSCN Missense_Mutation p.Q481L 0.06 possibly_damaging(0.678) TCGA-93-A4JP-01 1 233105693 233105693 C T NTPCR Silent p.V111V 0.08 TCGA-93-A4JP-01 20 40049168 40049169 TC - CHD6 Frame_Shift_Del p.D2036Rfs*5 0.09 TCGA-93-A4JP-01 20 44515573 44515573 G C SPATA25 Missense_Mutation p.N89K 0.11 deleterious_low_confidence(0.01) benign(0.043) TCGA-93-A4JP-01 21 33949215 33949215 C A TCP10L Nonsense_Mutation p.E173* 0.06 TCGA-93-A4JP-01 21 47552223 47552223 C T COL6A2 Silent p.H939H 0.12 TCGA-93-A4JP-01 22 31823154 31823154 C T DRG1 Silent p.I330I 0.08 TCGA-93-A4JP-01 22 38776375 38776375 C T RP3-449O17.1 Intron 0.14 TCGA-93-A4JP-01 2 150426477 150426477 G A MMADHC 3'UTR 0.11 TCGA-93-A4JP-01 2 190728574 190728574 A G PMS1 Missense_Mutation p.I654M 0.06 tolerated(0.36) benign(0.002) TCGA-93-A4JP-01 2 197662524 197662524 C T GTF3C3 Missense_Mutation p.E71K 0.08 tolerated_low_confidence(0.61) benign(0.002) TCGA-93-A4JP-01 2 201778068 201778068 G A ORC2 Missense_Mutation p.R533W 0.07 deleterious(0) probably_damaging(1) TCGA-93-A4JP-01 2 31595111 31595111 C T XDH Silent p.R613R 0.04 TCGA-93-A4JP-01 2 43798926 43798926 A C THADA Missense_Mutation p.W662G 0.08 deleterious(0) benign(0.078) TCGA-93-A4JP-01 2 69706132 69706132 G C AAK1 Missense_Mutation p.D877E 0.08 tolerated(0.09) possibly_damaging(0.672) TCGA-93-A4JP-01 3 130398311 130398311 T A PIK3R4 Nonsense_Mutation p.K1309* 0.07 TCGA-93-A4JP-01 3 164785184 164785184 C T SI Silent p.K193K 0.16 TCGA-93-A4JP-01 3 52544511 52544511 G C STAB1 Silent p.V925V 0.11 TCGA-93-A4JP-01 4 169183235 169183235 G A DDX60 Silent p.V1063V 0.10 TCGA-93-A4JP-01 4 46125878 46125878 C T GABRG1 Missense_Mutation p.S18N 0.10 tolerated_low_confidence(0.07) benign(0.001) TCGA-93-A4JP-01 4 68543401 68543401 T A UBA6 Silent p.P131P 0.10 TCGA-93-A4JP-01 4 79832090 79832090 G T BMP2K Nonsense_Mutation p.E797* 0.09 TCGA-93-A4JP-01 5 110836682 110836682 A G STARD4 Intron 0.07 TCGA-93-A4JP-01 5 140531421 140531421 G A PCDHB6 Missense_Mutation p.R528H 0.06 tolerated(0.23) benign(0.017) TCGA-93-A4JP-01 5 140751680 140751680 G A PCDHGB3 Silent p.A573A 0.09 TCGA-93-A4JP-01 5 161116748 161116748 A T GABRA6 Silent p.G212G 0.09 TCGA-93-A4JP-01 6 121768295 121768295 G A GJA1 Missense_Mutation p.R101Q 0.14 deleterious(0) probably_damaging(0.917) TCGA-93-A4JP-01 6 135521538 135521538 G T MYB Missense_Mutation p.K645N 0.11 deleterious(0) probably_damaging(1) TCGA-93-A4JP-01 6 152546872 152546872 G A SYNE1 Missense_Mutation p.A7112V 0.09 benign(0.135) TCGA-93-A4JP-01 6 32150470 32150470 C G AGER Missense_Mutation p.V233L 0.07 tolerated(0.3) benign(0) TCGA-93-A4JP-01 6 33424243 33424243 C T ZBTB9 Missense_Mutation p.H456Y 0.06 deleterious(0) probably_damaging(0.997) TCGA-93-A4JP-01 7 121652090 121652090 C T PTPRZ1 Missense_Mutation p.S997F 0.05 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-93-A4JP-01 7 130021012 130021012 C T CPA1 Missense_Mutation p.H47Y 0.11 tolerated(0.11) benign(0.008) TCGA-93-A4JP-01 7 55259524 55259524 T A EGFR Missense_Mutation p.L861Q 0.10 deleterious(0) possibly_damaging(0.831) TCGA-93-A4JP-01 9 101817574 101817574 G C COL15A1 Missense_Mutation p.E1038Q 0.09 tolerated(0.3) benign(0.305) TCGA-93-A4JP-01 9 98279194 98279194 C G RP11-435O5.4 3'Flank 0.10 TCGA-93-A4JP-01 X 134680696 134680696 A T DDX26B Missense_Mutation p.R167W 0.05 deleterious(0) probably_damaging(0.995) TCGA-93-A4JP-01 Y 4968284 4968284 C A PCDH11Y Missense_Mutation p.P889T 0.11 deleterious(0) probably_damaging(0.991) TCGA-93-A4JQ-01 10 105752861 105752861 C G SLK Missense_Mutation p.L162V 0.13 deleterious(0) probably_damaging(0.998) TCGA-93-A4JQ-01 10 127548237 127548237 G A DHX32 Missense_Mutation p.L262F 0.13 deleterious(0.04) probably_damaging(0.999) TCGA-93-A4JQ-01 10 129911746 129911746 G T MKI67 Missense_Mutation p.T534N 0.06 tolerated(0.24) benign(0.099) TCGA-93-A4JQ-01 10 46121673 46121673 G A ZFAND4 Missense_Mutation p.S533L 0.05 deleterious(0) probably_damaging(0.996) TCGA-93-A4JQ-01 10 73591664 73591664 C T PSAP Missense_Mutation p.C63Y 0.11 deleterious(0) probably_damaging(1) TCGA-93-A4JQ-01 10 75527635 75527635 C G SEC24C Missense_Mutation p.A684G 0.06 tolerated(0.58) possibly_damaging(0.717) TCGA-93-A4JQ-01 10 79590500 79590500 G A DLG5 Missense_Mutation p.T627M 0.10 tolerated(0.2) possibly_damaging(0.888) TCGA-93-A4JQ-01 10 97174523 97174523 G A SORBS1 Missense_Mutation p.P180S 0.11 deleterious_low_confidence(0.03) benign(0.019) TCGA-93-A4JQ-01 11 100226905 100226905 C G CNTN5 Nonsense_Mutation p.S1086* 0.25 TCGA-93-A4JQ-01 11 128844831 128844831 T C ARHGAP32 Missense_Mutation p.N740S 0.12 tolerated(0.05) benign(0.064) TCGA-93-A4JQ-01 11 134074000 134074000 G A NCAPD3 Missense_Mutation p.P386S 0.08 tolerated(0.06) benign(0.082) TCGA-93-A4JQ-01 11 14991612 14991612 C G CALCA Silent p.L32L 0.11 TCGA-93-A4JQ-01 11 20939730 20939730 G T NELL1 Silent p.G202G 0.10 TCGA-93-A4JQ-01 11 498910 498910 G C RNH1 Nonsense_Mutation p.S213* 0.11 TCGA-93-A4JQ-01 11 55861037 55861037 T A OR8I2 Missense_Mutation p.F85Y 0.06 deleterious(0) benign(0.27) TCGA-93-A4JQ-01 11 6592129 6592129 C G DNHD1 Missense_Mutation p.Q4463E 0.08 benign(0.016) TCGA-93-A4JQ-01 12 100200279 100200279 T C ANKS1B Missense_Mutation p.N191S 0.08 tolerated(0.07) benign(0.029) TCGA-93-A4JQ-01 12 101731899 101731899 A G UTP20 Missense_Mutation p.I1238V 0.07 tolerated(0.41) benign(0.001) TCGA-93-A4JQ-01 12 105534995 105534995 A T KIAA1033 Missense_Mutation p.K586N 0.06 deleterious(0.02) probably_damaging(0.911) TCGA-93-A4JQ-01 12 133311022 133311022 G C ANKLE2 Missense_Mutation p.Q614E 0.11 tolerated(0.34) benign(0.015) TCGA-93-A4JQ-01 12 40653348 40653348 G A LRRK2 Silent p.E495E 0.10 TCGA-93-A4JQ-01 12 6061619 6061619 A T VWF Missense_Mutation p.F2685I 0.12 tolerated(1) benign(0) TCGA-93-A4JQ-01 12 64814267 64814267 T C XPOT Missense_Mutation p.V270A 0.07 tolerated(0.09) benign(0.037) TCGA-93-A4JQ-01 13 32836593 32836593 A C FRY Missense_Mutation p.Q2587P 0.10 tolerated_low_confidence(0.18) benign(0.002) TCGA-93-A4JQ-01 13 98829472 98829472 G C RNF113B Missense_Mutation p.P7A 0.07 deleterious_low_confidence(0.03) benign(0.011) TCGA-93-A4JQ-01 13 99483971 99483971 G C DOCK9 Missense_Mutation p.L1439V 0.17 deleterious(0.02) possibly_damaging(0.904) TCGA-93-A4JQ-01 14 57269042 57269042 C T OTX2 Missense_Mutation p.R102H 0.15 deleterious(0.01) probably_damaging(0.909) TCGA-93-A4JQ-01 14 94120089 94120089 A C UNC79 Missense_Mutation p.M1891L 0.19 tolerated(0.35) possibly_damaging(0.902) TCGA-93-A4JQ-01 14 96752271 96752271 C G ATG2B Missense_Mutation p.E2020Q 0.09 deleterious(0) probably_damaging(0.988) TCGA-93-A4JQ-01 15 25332817 25332817 G A SNORD116-20 RNA 0.06 TCGA-93-A4JQ-01 15 42057194 42057194 G A MGA Missense_Mutation p.V2619I 0.07 tolerated(0.05) benign(0.02) TCGA-93-A4JQ-01 16 2231581 2231581 C T CASKIN1 Missense_Mutation p.M596I 0.27 possibly_damaging(0.813) TCGA-93-A4JQ-01 16 69385535 69385535 C G TMED6 Missense_Mutation p.R41P 0.05 deleterious(0.01) possibly_damaging(0.637) TCGA-93-A4JQ-01 16 76592407 76592407 T G CNTNAP4 Missense_Mutation p.F1179V 0.12 deleterious(0) probably_damaging(0.999) TCGA-93-A4JQ-01 16 81157274 81157274 G A PKD1L2 RNA 0.08 TCGA-93-A4JQ-01 16 85954813 85954813 C G IRF8 Silent p.V402V 0.05 TCGA-93-A4JQ-01 17 45507379 45507379 G C EFCAB13 Intron 0.11 TCGA-93-A4JQ-01 17 46919124 46919124 C G CALCOCO2 Missense_Mutation p.H19D 0.07 deleterious(0.01) benign(0.434) TCGA-93-A4JQ-01 17 56271143 56271143 G A EPX Missense_Mutation p.E139K 0.10 tolerated(0.62) benign(0.069) TCGA-93-A4JQ-01 17 58299774 58299774 C G USP32 Missense_Mutation p.R582T 0.08 deleterious(0) probably_damaging(0.985) TCGA-93-A4JQ-01 17 74077594 74077594 C T EXOC7 3'Flank 0.06 TCGA-93-A4JQ-01 17 78172583 78172583 C T CARD14 Intron 0.07 TCGA-93-A4JQ-01 17 79620241 79620241 T C PDE6G Missense_Mutation p.Q32R 0.05 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-93-A4JQ-01 18 13621205 13621205 G T LDLRAD4 Missense_Mutation p.V91F 0.06 deleterious(0.04) benign(0.273) TCGA-93-A4JQ-01 18 54291579 54291579 G T TXNL1 Silent p.I103I 0.06 TCGA-93-A4JQ-01 19 17985495 17985495 G A SLC5A5 Silent p.A166A 0.09 TCGA-93-A4JQ-01 19 33700335 33700335 G A SLC7A10 Silent p.F440F 0.05 TCGA-93-A4JQ-01 19 43259217 43259217 T A PSG8 Missense_Mutation p.E304V 0.09 deleterious(0.01) possibly_damaging(0.457) TCGA-93-A4JQ-01 19 43259218 43259218 C A PSG8 Nonsense_Mutation p.E304* 0.09 TCGA-93-A4JQ-01 19 51633410 51633410 T C SIGLEC9 Intron 0.24 TCGA-93-A4JQ-01 19 51769043 51769043 T C SIGLECL1 Missense_Mutation p.L106S 0.05 tolerated(0.13) benign(0.11) TCGA-93-A4JQ-01 19 52618487 52618487 G C ZNF616 Missense_Mutation p.Q644E 0.04 tolerated(0.27) possibly_damaging(0.696) TCGA-93-A4JQ-01 19 58017984 58017984 C T ZNF773 Missense_Mutation p.S174L 0.09 tolerated(0.11) benign(0.003) TCGA-93-A4JQ-01 19 58048864 58048864 G C ZNF549 Missense_Mutation p.E164D 0.06 tolerated(0.24) benign(0.011) TCGA-93-A4JQ-01 1 150471498 150471498 C A TARS2 Missense_Mutation p.D509E 0.06 tolerated(0.08) benign(0.075) TCGA-93-A4JQ-01 1 152006272 152006272 T G S100A11 Missense_Mutation p.K3T 0.09 deleterious_low_confidence(0) benign(0.305) TCGA-93-A4JQ-01 1 167863154 167863154 C T ADCY10 Silent p.L255L 0.10 TCGA-93-A4JQ-01 1 179312040 179312040 A G SOAT1 Silent p.L301L 0.14 TCGA-93-A4JQ-01 1 190067540 190067540 C T BRINP3 Missense_Mutation p.G637S 0.07 tolerated(0.5) benign(0.009) TCGA-93-A4JQ-01 1 21902374 21902374 C T ALPL Silent p.V382V 0.04 TCGA-93-A4JQ-01 1 220091750 220091750 T A SLC30A10 Missense_Mutation p.S269C 0.05 tolerated(0.05) possibly_damaging(0.762) TCGA-93-A4JQ-01 1 235918941 235918941 C G LYST Missense_Mutation p.D2356H 0.21 tolerated(0.12) benign(0.004) TCGA-93-A4JQ-01 1 237659909 237659909 C T RYR2 Missense_Mutation p.T687I 0.09 probably_damaging(1) TCGA-93-A4JQ-01 1 45811115 45811115 G C TESK2 Missense_Mutation p.I371M 0.07 tolerated(0.4) benign(0.133) TCGA-93-A4JQ-01 1 46067955 46067955 C T NASP Silent p.L46L 0.10 TCGA-93-A4JQ-01 1 91843965 91843965 C G HFM1 Missense_Mutation p.D411H 0.08 deleterious(0) probably_damaging(1) TCGA-93-A4JQ-01 20 50241757 50241757 C G ATP9A Missense_Mutation p.E664Q 0.11 deleterious(0) probably_damaging(0.987) TCGA-93-A4JQ-01 20 62724085 62724085 C G OPRL1 Silent p.L4L 0.07 TCGA-93-A4JQ-01 20 62738106 62738106 G A NPBWR2 Nonsense_Mutation p.Q27* 0.07 TCGA-93-A4JQ-01 21 28302319 28302319 A G ADAMTS5 Missense_Mutation p.V704A 0.09 deleterious(0.02) benign(0.341) TCGA-93-A4JQ-01 21 45173597 45173597 C G PDXK Silent p.L252L 0.08 TCGA-93-A4JQ-01 2 103095545 103095545 C T SLC9A4 Silent p.I168I 0.08 TCGA-93-A4JQ-01 2 179736895 179736895 G A CCDC141 Nonsense_Mutation p.Q682* 0.09 TCGA-93-A4JQ-01 2 209271779 209271779 T A PTH2R Missense_Mutation p.L4Q 0.14 deleterious_low_confidence(0.03) benign(0.094) TCGA-93-A4JQ-01 2 231036849 231036849 G A SP110 Missense_Mutation p.S583L 0.08 tolerated(0.1) possibly_damaging(0.504) TCGA-93-A4JQ-01 2 233898902 233898902 C T NEU2 Missense_Mutation p.A93V 0.09 deleterious(0.02) benign(0.016) TCGA-93-A4JQ-01 2 26598010 26598010 A G EPT1 Missense_Mutation p.I226V 0.05 tolerated(0.18) possibly_damaging(0.851) TCGA-93-A4JQ-01 2 60689297 60689297 C G BCL11A Missense_Mutation p.E250D 0.07 tolerated(0.54) benign(0.026) TCGA-93-A4JQ-01 2 71650870 71650870 C G ZNF638 Nonsense_Mutation p.S1409* 0.08 TCGA-93-A4JQ-01 2 85554207 85554207 A G TGOLN2 Silent p.T216T 0.06 TCGA-93-A4JQ-01 2 98275910 98275910 G C ACTR1B Missense_Mutation p.P74A 0.05 deleterious(0.02) possibly_damaging(0.595) TCGA-93-A4JQ-01 3 119134278 119134278 G A ARHGAP31 Missense_Mutation p.V1168I 0.15 tolerated(0.24) benign(0.015) TCGA-93-A4JQ-01 3 122247396 122247396 T C PARP9 Missense_Mutation p.S794G 0.06 deleterious(0) probably_damaging(1) TCGA-93-A4JQ-01 3 150377891 150377891 G C FAM194A Missense_Mutation p.L594V 0.08 deleterious(0.02) possibly_damaging(0.803) TCGA-93-A4JQ-01 3 151545625 151545625 G C AADAC Missense_Mutation p.E289Q 0.06 deleterious(0.01) possibly_damaging(0.573) TCGA-93-A4JQ-01 3 178525132 178525132 T A KCNMB2 Intron 0.09 TCGA-93-A4JQ-01 3 37476507 37476507 G A C3orf35 Silent p.L133L 0.09 TCGA-93-A4JQ-01 3 47376203 47376203 C A KLHL18 Missense_Mutation p.H264Q 0.10 tolerated(0.13) probably_damaging(0.983) TCGA-93-A4JQ-01 3 49881292 49881292 G A TRAIP Missense_Mutation p.T117I 0.05 deleterious(0.03) benign(0.382) TCGA-93-A4JQ-01 3 51696547 51696547 G A RAD54L2 Missense_Mutation p.S1172N 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.905) TCGA-93-A4JQ-01 3 78685053 78685053 T C ROBO1 Silent p.S1081S 0.12 TCGA-93-A4JQ-01 3 97852232 97852232 G C OR5H1 Missense_Mutation p.D231H 0.09 tolerated(0.08) possibly_damaging(0.516) TCGA-93-A4JQ-01 4 160273969 160273969 G A RAPGEF2 Missense_Mutation p.R1172H 0.14 tolerated_low_confidence(0.55) benign(0.006) TCGA-93-A4JQ-01 4 187628340 187628340 C T FAT1 Missense_Mutation p.R881H 0.06 benign(0.005) TCGA-93-A4JQ-01 4 76877194 76877194 G A SDAD1 Silent p.N650N 0.14 TCGA-93-A4JQ-01 4 8229541 8229541 C T SH3TC1 Missense_Mutation p.S707L 0.11 tolerated(0.35) benign(0.001) TCGA-93-A4JQ-01 5 1052461 1052461 G C SLC12A7 3'UTR 0.08 TCGA-93-A4JQ-01 5 122748204 122748204 T G CEP120 Missense_Mutation p.K118Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-93-A4JQ-01 5 131396515 131396515 T C IL3 Missense_Mutation p.I39T 0.07 deleterious(0.03) possibly_damaging(0.627) TCGA-93-A4JQ-01 5 138761964 138761964 G A DNAJC18 Silent p.F152F 0.06 TCGA-93-A4JQ-01 5 140182147 140182147 C A PCDHA3 Missense_Mutation p.F455L 0.06 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-93-A4JQ-01 5 140188574 140188574 C G PCDHA4 Missense_Mutation p.S601W 0.07 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-93-A4JQ-01 5 147012311 147012311 A G JAKMIP2 Silent p.L570L 0.08 TCGA-93-A4JQ-01 5 148596606 148596606 A G ABLIM3 Missense_Mutation p.T252A 0.20 tolerated(0.06) benign(0.077) TCGA-93-A4JQ-01 5 167182167 167182167 C G TENM2 Intron 0.07 TCGA-93-A4JQ-01 5 26881247 26881247 A T CDH9 Nonstop_Mutation p.*790Kext*6 0.05 TCGA-93-A4JQ-01 5 35904743 35904743 G A CAPSL Silent p.T177T 0.10 TCGA-93-A4JQ-01 5 37168999 37168999 G A C5orf42 Missense_Mutation p.S2376L 0.05 tolerated(0.33) benign(0.013) TCGA-93-A4JQ-01 5 442605 442605 C T C5orf55 Silent p.L111L 0.17 TCGA-93-A4JQ-01 6 109965820 109965820 A G AK9 Silent p.F277F 0.12 TCGA-93-A4JQ-01 6 26197187 26197187 C T HIST1H3D Missense_Mutation p.E98K 0.07 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-93-A4JQ-01 6 26252142 26252142 G C HIST1H2BH Silent p.S88S 0.12 TCGA-93-A4JQ-01 6 30671931 30671931 G C MDC1 Missense_Mutation p.Q1677E 0.07 tolerated(0.16) benign(0.01) TCGA-93-A4JQ-01 6 49573491 49573491 C T RHAG 3'UTR 0.06 TCGA-93-A4JQ-01 6 54806417 54806417 A G FAM83B Missense_Mutation p.D883G 0.06 tolerated(0.11) possibly_damaging(0.798) TCGA-93-A4JQ-01 6 75994297 75994297 C G TMEM30A Missense_Mutation p.G20R 0.07 tolerated(0.15) benign(0.021) TCGA-93-A4JQ-01 6 90097286 90097286 T A RRAGD Missense_Mutation p.S58C 0.16 deleterious(0.03) possibly_damaging(0.784) TCGA-93-A4JQ-01 6 90097287 90097287 G A RRAGD Silent p.F57F 0.16 TCGA-93-A4JQ-01 7 111387323 111387323 C A DOCK4 Missense_Mutation p.E1522D 0.12 tolerated(0.1) probably_damaging(0.991) TCGA-93-A4JQ-01 7 114299660 114299660 C T FOXP2 Missense_Mutation p.L552F 0.09 deleterious(0) unknown(0) TCGA-93-A4JQ-01 7 142606742 142606742 C T TRPV5 Missense_Mutation p.M603I 0.12 deleterious(0.01) benign(0.291) TCGA-93-A4JQ-01 7 151877213 151877213 T G KMT2C Splice_Site p.X2384_splice 0.17 TCGA-93-A4JQ-01 7 27135309 27135309 G A HOXA1 Missense_Mutation p.P75S 0.09 tolerated(0.17) benign(0.011) TCGA-93-A4JQ-01 7 36397094 36397094 C G KIAA0895 Missense_Mutation p.G95A 0.09 deleterious_low_confidence(0.05) benign(0.021) TCGA-93-A4JQ-01 7 91631979 91631979 C G AKAP9 Silent p.V916V 0.06 TCGA-93-A4JQ-01 7 99566019 99566019 C A AZGP1 Missense_Mutation p.E124D 0.05 tolerated(0.35) probably_damaging(0.97) TCGA-93-A4JQ-01 8 109215343 109215343 G A EIF3E Missense_Mutation p.H390Y 0.12 tolerated(0.09) probably_damaging(0.983) TCGA-93-A4JQ-01 8 26365954 26365954 C G PNMA2 Missense_Mutation p.L106F 0.07 deleterious(0.02) probably_damaging(0.997) TCGA-93-A4JQ-01 8 73958199 73958199 T C TERF1 Missense_Mutation p.W383R 0.06 deleterious(0) probably_damaging(1) TCGA-93-A4JQ-01 9 101061540 101061540 G A GABBR2 Silent p.D836D 0.06 TCGA-93-A4JQ-01 9 125391113 125391113 C G OR1B1 Missense_Mutation p.L234F 0.09 tolerated(0.06) probably_damaging(0.967) TCGA-93-A4JQ-01 9 131504097 131504097 C T ZER1 Silent p.K533K 0.06 TCGA-93-A4JQ-01 9 33468556 33468556 C A NOL6 Missense_Mutation p.D386Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-93-A4JQ-01 9 35870031 35870031 T G OR13J1 Missense_Mutation p.Y123S 0.07 deleterious(0.01) possibly_damaging(0.632) TCGA-93-A4JQ-01 9 8486187 8486187 T C PTPRD Missense_Mutation p.E877G 0.09 deleterious(0.03) benign(0.239) TCGA-93-A4JQ-01 X 110574254 110574254 T C DCX Missense_Mutation p.K356R 0.15 tolerated(0.09) benign(0.186) TCGA-93-A4JQ-01 X 114250332 114250332 G C IL13RA2 Silent p.L49L 0.14 TCGA-93-A4JQ-01 X 114250373 114250373 G C IL13RA2 Missense_Mutation p.Q36E 0.19 tolerated(0.13) benign(0.001) TCGA-93-A4JQ-01 X 128890529 128890529 C T XPNPEP2 Silent p.Y455Y 0.17 TCGA-93-A4JQ-01 X 128946763 128946763 G C ZDHHC9 Silent p.L236L 0.12 TCGA-93-A4JQ-01 X 12905742 12905742 C A TLR7 Missense_Mutation p.D705E 0.14 deleterious(0) probably_damaging(0.991) TCGA-93-A4JQ-01 X 152226294 152226294 G C PNMA3 Silent p.L294L 0.10 TCGA-93-A4JQ-01 X 54275485 54275485 C A WNK3 Missense_Mutation p.R1099I 0.19 tolerated(0.05) possibly_damaging(0.602) TCGA-93-A4JQ-01 X 54275518 54275518 T G WNK3 Missense_Mutation p.Q1088P 0.20 tolerated(0.06) benign(0.002) TCGA-93-A4JQ-01 X 65427052 65427052 C A HEPH Missense_Mutation p.F823L 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-95-7039-01 10 101371021 101371021 C A SLC25A28 Missense_Mutation p.S227I 0.29 deleterious(0) probably_damaging(0.998) TCGA-95-7039-01 10 101716779 101716779 C A DNMBP Missense_Mutation p.R151L 0.20 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 10 101829578 101829578 C A CPN1 Missense_Mutation p.V157L 0.17 tolerated(0.4) benign(0.016) TCGA-95-7039-01 10 102509555 102509555 C T PAX2 Silent p.P32P 0.24 TCGA-95-7039-01 10 105798268 105798268 A T COL17A1 Missense_Mutation p.M989K 0.27 benign(0.258) TCGA-95-7039-01 10 1060227 1060227 G T GTPBP4 Missense_Mutation p.G528V 0.17 deleterious(0) probably_damaging(0.983) TCGA-95-7039-01 10 111639976 111639976 G T XPNPEP1 Silent p.L384L 0.15 TCGA-95-7039-01 10 117027883 117027883 G T ATRNL1 Missense_Mutation p.D688Y 0.18 deleterious(0) probably_damaging(0.935) TCGA-95-7039-01 10 118030335 118030335 C A GFRA1 Missense_Mutation p.Q111H 0.12 deleterious(0.05) benign(0.225) TCGA-95-7039-01 10 118101646 118101646 T C CCDC172 Silent p.L127L 0.28 TCGA-95-7039-01 10 122280557 122280557 C A PPAPDC1A Missense_Mutation p.P132H 0.25 deleterious(0.02) possibly_damaging(0.897) TCGA-95-7039-01 10 122334710 122334710 T A PPAPDC1A Missense_Mutation p.S171R 0.13 tolerated(1) benign(0) TCGA-95-7039-01 10 123970198 123970198 G T TACC2 Silent p.S2086S 0.19 TCGA-95-7039-01 10 124273937 124273937 G T HTRA1 3'UTR 0.24 TCGA-95-7039-01 10 127693614 127693614 G C FANK1 Missense_Mutation p.C234S 0.14 deleterious(0.04) possibly_damaging(0.839) TCGA-95-7039-01 10 127731681 127731681 G - ADAM12 Frame_Shift_Del p.H681Tfs*29 0.11 TCGA-95-7039-01 10 129207637 129207637 T G DOCK1 Missense_Mutation p.V1421G 0.24 deleterious(0) possibly_damaging(0.745) TCGA-95-7039-01 10 133930790 133930790 G T JAKMIP3 Silent p.R115R 0.17 TCGA-95-7039-01 10 135166001 135166001 G A PRAP1 3'UTR 0.17 TCGA-95-7039-01 10 15255361 15255361 A T FAM171A1 Silent p.S742S 0.17 TCGA-95-7039-01 10 15617595 15617595 T A ITGA8 Splice_Site p.X791_splice 0.26 TCGA-95-7039-01 10 15647745 15647745 C A ITGA8 Missense_Mutation p.D650Y 0.19 deleterious(0) probably_damaging(0.979) TCGA-95-7039-01 10 15726004 15726004 G C ITGA8 Missense_Mutation p.N189K 0.18 deleterious(0) benign(0.211) TCGA-95-7039-01 10 15902296 15902296 C A FAM188A Translation_Start_Site p.M1? 0.23 deleterious_low_confidence(0) benign(0.035) TCGA-95-7039-01 10 18087560 18087560 C G TMEM236 3'UTR 0.22 TCGA-95-7039-01 10 18280167 18280167 G T SLC39A12 Nonsense_Mutation p.G453* 0.22 TCGA-95-7039-01 10 18280168 18280168 G T SLC39A12 Missense_Mutation p.G453V 0.23 deleterious(0) probably_damaging(0.912) TCGA-95-7039-01 10 25885700 25885700 G T GPR158 Missense_Mutation p.L709F 0.21 deleterious(0) possibly_damaging(0.844) TCGA-95-7039-01 10 26459394 26459395 - A MYO3A Frame_Shift_Ins p.N1110Kfs*11 0.10 TCGA-95-7039-01 10 27294557 27294557 C A ANKRD26 Nonsense_Mutation p.E1699* 0.16 TCGA-95-7039-01 10 27687737 27687737 G T PTCHD3 Missense_Mutation p.T597K 0.27 deleterious(0) possibly_damaging(0.839) TCGA-95-7039-01 10 3190491 3190491 A G PITRM1 Intron 0.32 TCGA-95-7039-01 10 38651256 38651256 C A HSD17B7P2 RNA 0.34 TCGA-95-7039-01 10 43316061 43316061 A T BMS1 Missense_Mutation p.I959F 0.21 deleterious(0.01) probably_damaging(0.949) TCGA-95-7039-01 10 43606842 43606842 T C RET Missense_Mutation p.M484T 0.29 tolerated(0.9) benign(0) TCGA-95-7039-01 10 45941035 45941035 T G ALOX5 Missense_Mutation p.L642R 0.27 deleterious(0) probably_damaging(1) TCGA-95-7039-01 10 46999948 46999948 G T GPRIN2 Silent p.A356A 0.10 TCGA-95-7039-01 10 47087349 47087349 C A NPY4R Missense_Mutation p.S189Y 0.11 tolerated(0.07) possibly_damaging(0.904) TCGA-95-7039-01 10 48414232 48414232 C T GDF2 Silent p.K212K 0.16 TCGA-95-7039-01 10 50863149 50863149 G T CHAT Missense_Mutation p.R548L 0.15 tolerated(0.09) benign(0.007) TCGA-95-7039-01 10 54531239 54531239 C A MBL2 Missense_Mutation p.D53Y 0.19 deleterious(0) possibly_damaging(0.873) TCGA-95-7039-01 10 55569178 55569178 T A PCDH15 Missense_Mutation p.R478S 0.21 deleterious_low_confidence(0) unknown(0) TCGA-95-7039-01 10 55780091 55780091 G T PCDH15 Missense_Mutation p.T871K 0.27 deleterious(0) probably_damaging(0.998) TCGA-95-7039-01 10 55780158 55780158 C T PCDH15 Missense_Mutation p.G849R 0.17 tolerated(0.46) probably_damaging(0.972) TCGA-95-7039-01 10 60124613 60124613 C G UBE2D1 Nonsense_Mutation p.S94* 0.20 TCGA-95-7039-01 10 60549116 60549116 C T BICC1 Missense_Mutation p.S232L 0.16 tolerated(0.31) benign(0.028) TCGA-95-7039-01 10 61834532 61834532 T A ANK3 Missense_Mutation p.Y2036F 0.21 probably_damaging(0.935) TCGA-95-7039-01 10 61846462 61846462 T C ANK3 Missense_Mutation p.N1241D 0.35 benign(0.045) TCGA-95-7039-01 10 64148220 64148220 G A ZNF365 Missense_Mutation p.R270Q 0.14 deleterious(0.04) possibly_damaging(0.713) TCGA-95-7039-01 10 69909816 69909816 A G MYPN Missense_Mutation p.Y422C 0.11 tolerated(0.07) probably_damaging(0.988) TCGA-95-7039-01 10 69948766 69948766 G A MYPN Silent p.E936E 0.29 TCGA-95-7039-01 10 70446225 70446225 A G TET1 Missense_Mutation p.K1722R 0.22 tolerated(1) benign(0.003) TCGA-95-7039-01 10 72489072 72489072 A T ADAMTS14 Missense_Mutation p.E298V 0.14 deleterious(0) probably_damaging(0.958) TCGA-95-7039-01 10 73511558 73511558 G A C10orf54 Silent p.P255P 0.25 TCGA-95-7039-01 10 73577134 73577134 C G PSAP 3'UTR 0.23 TCGA-95-7039-01 10 74714288 74714288 A G PLA2G12B Silent p.S52S 0.15 TCGA-95-7039-01 10 75072269 75072269 C A TTC18 Nonsense_Mutation p.E419* 0.07 TCGA-95-7039-01 10 76936061 76936061 G - SAMD8 Intron 0.08 TCGA-95-7039-01 10 7829784 7829784 T A KIN Missense_Mutation p.E38V 0.27 deleterious(0) possibly_damaging(0.735) TCGA-95-7039-01 10 82403816 82403816 C A SH2D4B Silent p.T351T 0.24 TCGA-95-7039-01 10 84733613 84733613 C A NRG3 Missense_Mutation p.Q452K 0.33 tolerated_low_confidence(0.14) benign(0.297) TCGA-95-7039-01 10 84744865 84744865 G A NRG3 Missense_Mutation p.S532N 0.15 tolerated(0.86) benign(0.003) TCGA-95-7039-01 10 96039631 96039631 G T PLCE1 Missense_Mutation p.E1586D 0.33 tolerated(0.34) benign(0.163) TCGA-95-7039-01 10 98097906 98097906 C A DNTT Silent p.L485L 0.23 TCGA-95-7039-01 11 102586169 102586169 C T MMP8 Splice_Site p.X301_splice 0.64 TCGA-95-7039-01 11 104970149 104970149 C G CARD17 Splice_Site p.X92_splice 0.33 TCGA-95-7039-01 11 10648107 10648107 G T MRVI1 Missense_Mutation p.D258E 0.18 tolerated(0.07) probably_damaging(0.97) TCGA-95-7039-01 11 116633838 116633838 C G BUD13 Missense_Mutation p.R156P 0.24 deleterious(0) benign(0.029) TCGA-95-7039-01 11 117066842 117066842 G T SIDT2 3'UTR 0.31 TCGA-95-7039-01 11 118916543 118916543 C A HYOU1 Missense_Mutation p.G963V 0.12 tolerated(0.22) benign(0.025) TCGA-95-7039-01 11 120350915 120350915 G T ARHGEF12 Missense_Mutation p.R1338L 0.26 tolerated_low_confidence(0.22) benign(0.002) TCGA-95-7039-01 11 121016361 121016361 G T TECTA Missense_Mutation p.G1214V 0.06 deleterious(0) probably_damaging(0.985) TCGA-95-7039-01 11 1217626 1217626 C A MUC5AC RNA 0.30 TCGA-95-7039-01 11 121970474 121970474 C T MIR125B1 RNA 0.33 TCGA-95-7039-01 11 122742061 122742061 C - CRTAM Frame_Shift_Del p.S379* 0.29 TCGA-95-7039-01 11 122756812 122756812 G T C11orf63 Silent p.L85L 0.30 TCGA-95-7039-01 11 123676174 123676174 T A OR6M1 Missense_Mutation p.Q295L 0.11 deleterious(0) benign(0) TCGA-95-7039-01 11 123810330 123810330 C T OR4D5 Missense_Mutation p.P3S 0.13 tolerated(0.75) benign(0.002) TCGA-95-7039-01 11 124564420 124564420 G C SPA17 3'UTR 0.50 TCGA-95-7039-01 11 125299986 125299986 G T PKNOX2 Missense_Mutation p.A381S 0.09 tolerated(0.14) benign(0.339) TCGA-95-7039-01 11 129753093 129753093 C T NFRKB Silent p.P300P 0.30 TCGA-95-7039-01 11 129793258 129793258 T C PRDM10 Missense_Mutation p.Y644C 0.24 deleterious(0) possibly_damaging(0.808) TCGA-95-7039-01 11 134026925 134026925 T C NCAPD3 Missense_Mutation p.S1414G 0.14 deleterious(0) probably_damaging(0.994) TCGA-95-7039-01 11 134062584 134062584 C A NCAPD3 Missense_Mutation p.S682I 0.20 tolerated(0.11) benign(0.133) TCGA-95-7039-01 11 17111392 17111392 G C PIK3C2A Missense_Mutation p.L1652V 0.14 tolerated(0.11) probably_damaging(0.999) TCGA-95-7039-01 11 18291466 18291466 C A SAA1 3'UTR 0.32 TCGA-95-7039-01 11 18955702 18955702 C A MRGPRX1 Silent p.P210P 0.25 TCGA-95-7039-01 11 2181169 2181169 C A INS Silent p.L82L 0.27 TCGA-95-7039-01 11 28318438 28318438 C - METTL15 Frame_Shift_Del p.I248Sfs*45 0.15 TCGA-95-7039-01 11 30033219 30033219 C A KCNA4 Missense_Mutation p.R336M 0.13 deleterious(0.01) possibly_damaging(0.556) TCGA-95-7039-01 11 34181802 34181802 G T ABTB2 Silent p.A832A 0.33 TCGA-95-7039-01 11 35456112 35456112 C A PAMR1 Missense_Mutation p.G542V 0.08 deleterious(0) probably_damaging(1) TCGA-95-7039-01 11 36597194 36597194 A T RAG1 Missense_Mutation p.K780N 0.18 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-95-7039-01 11 4133143 4133143 A T RRM1 Silent p.P167P 0.18 TCGA-95-7039-01 11 44098999 44098999 G T ACCS Intron 0.20 TCGA-95-7039-01 11 44129620 44129620 G T EXT2 Missense_Mutation p.V153F 0.41 deleterious(0.05) benign(0.3) TCGA-95-7039-01 11 4566790 4566790 C G OR52M1 Missense_Mutation p.R124G 0.34 deleterious(0) possibly_damaging(0.734) TCGA-95-7039-01 11 46407467 46407467 A T CHRM4 Missense_Mutation p.L214Q 0.25 deleterious(0) probably_damaging(1) TCGA-95-7039-01 11 46783552 46783552 T C CKAP5 Missense_Mutation p.N1407D 0.11 deleterious(0.04) benign(0.061) TCGA-95-7039-01 11 47256366 47256366 G T DDB2 Missense_Mutation p.C254F 0.37 deleterious(0.01) probably_damaging(1) TCGA-95-7039-01 11 48146544 48146544 G T PTPRJ Missense_Mutation p.R300L 0.13 tolerated(0.39) benign(0.002) TCGA-95-7039-01 11 4825302 4825302 C A OR52R1 Missense_Mutation p.Q103H 0.33 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 11 48511136 48511136 C A OR4A47 Silent p.P264P 0.29 TCGA-95-7039-01 11 49598243 49598243 C A RP11-707M1.1 RNA 0.17 TCGA-95-7039-01 11 4968004 4968004 G A OR51A4 Silent p.F109F 0.10 TCGA-95-7039-01 11 4968029 4968029 G C OR51A4 Missense_Mutation p.A101G 0.11 deleterious(0.01) probably_damaging(0.911) TCGA-95-7039-01 11 5010967 5010967 G A MMP26 Silent p.R63R 0.32 TCGA-95-7039-01 11 5221672 5221672 C G OR51V1 Missense_Mutation p.V87L 0.34 tolerated(1) benign(0.07) TCGA-95-7039-01 11 5255238 5255238 C A HBD Missense_Mutation p.D100Y 0.16 deleterious(0) probably_damaging(0.992) TCGA-95-7039-01 11 55032683 55032683 A G TRIM48 Missense_Mutation p.M118V 0.10 tolerated(0.14) benign(0.004) TCGA-95-7039-01 11 55032762 55032762 C A TRIM48 Missense_Mutation p.P144H 0.19 deleterious(0) possibly_damaging(0.818) TCGA-95-7039-01 11 55322642 55322642 G - OR4C15 Frame_Shift_Del p.W287* 0.27 TCGA-95-7039-01 11 55339859 55339860 AA T OR4C16 Frame_Shift_Del p.K86* 0.17 TCGA-95-7039-01 11 55418948 55418948 C A OR4S2 Missense_Mutation p.T190K 0.19 deleterious(0) probably_damaging(1) TCGA-95-7039-01 11 55419038 55419038 T A OR4S2 Missense_Mutation p.L220Q 0.16 deleterious(0) probably_damaging(1) TCGA-95-7039-01 11 55578958 55578958 T A OR5L1 Missense_Mutation p.C6S 0.16 tolerated(0.46) probably_damaging(0.995) TCGA-95-7039-01 11 55587679 55587679 G T OR5D18 Missense_Mutation p.D192Y 0.32 deleterious(0) benign(0.406) TCGA-95-7039-01 11 55595022 55595022 A T OR5L2 Missense_Mutation p.T110S 0.14 tolerated(0.16) benign(0.038) TCGA-95-7039-01 11 55735707 55735707 G C OR10AG1 Missense_Mutation p.T78S 0.11 tolerated(0.07) benign(0.086) TCGA-95-7039-01 11 55798067 55798067 C A OR5AS1 Missense_Mutation p.P58H 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-95-7039-01 11 55798068 55798068 C T OR5AS1 Silent p.P58P 0.24 TCGA-95-7039-01 11 55798258 55798258 C A OR5AS1 Missense_Mutation p.R122S 0.30 deleterious(0.01) possibly_damaging(0.825) TCGA-95-7039-01 11 55798783 55798783 G T OR5AS1 Missense_Mutation p.V297L 0.23 deleterious(0) benign(0.327) TCGA-95-7039-01 11 55872601 55872602 TG - OR8H2 Frame_Shift_Del p.F29Yfs*42 0.27 TCGA-95-7039-01 11 55872770 55872770 G A OR8H2 Silent p.A84A 0.14 TCGA-95-7039-01 11 55904431 55904431 A C OR8J3 Missense_Mutation p.M255R 0.11 deleterious(0) benign(0.047) TCGA-95-7039-01 11 56057627 56057627 C G OR8H1 Missense_Mutation p.M304I 0.21 tolerated(0.65) benign(0.003) TCGA-95-7039-01 11 56185245 56185245 A C OR5R1 Missense_Mutation p.V155G 0.09 deleterious(0.02) benign(0.004) TCGA-95-7039-01 11 56345057 56345057 C A OR5M10 Silent p.L47L 0.32 TCGA-95-7039-01 11 56345131 56345131 G C OR5M10 Missense_Mutation p.L23V 0.20 deleterious(0.02) benign(0.41) TCGA-95-7039-01 11 56468178 56468178 G T OR9G1 Silent p.G105G 0.09 TCGA-95-7039-01 11 56511071 56511071 G T OR9G4 Missense_Mutation p.P73T 0.23 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 11 56756798 56756798 C T OR5AK2 Missense_Mutation p.S137F 0.15 deleterious(0) probably_damaging(0.966) TCGA-95-7039-01 11 57076401 57076401 C A TNKS1BP1 Missense_Mutation p.G1262C 0.23 deleterious(0.04) probably_damaging(0.958) TCGA-95-7039-01 11 57145281 57145281 T A PRG3 Missense_Mutation p.D179V 0.17 deleterious(0) probably_damaging(0.996) TCGA-95-7039-01 11 57947257 57947257 T A OR9Q1 Missense_Mutation p.L114H 0.17 deleterious(0) probably_damaging(0.966) TCGA-95-7039-01 11 58170407 58170407 C A OR5B3 Missense_Mutation p.G159V 0.27 tolerated_low_confidence(0.07) benign(0.17) TCGA-95-7039-01 11 59210894 59210894 C A OR5A1 Missense_Mutation p.L85I 0.10 deleterious(0.02) possibly_damaging(0.786) TCGA-95-7039-01 11 59211169 59211169 C A OR5A1 Silent p.I176I 0.37 TCGA-95-7039-01 11 59828629 59828629 C - MS4A3 5'UTR 0.16 TCGA-95-7039-01 11 60070044 60070044 C A MS4A4A Missense_Mutation p.L134I 0.13 deleterious(0.05) probably_damaging(0.919) TCGA-95-7039-01 11 6023867 6023867 A G OR56A4 Missense_Mutation p.M171T 0.43 deleterious(0.03) benign(0.008) TCGA-95-7039-01 11 60637239 60637239 T C ZP1 Missense_Mutation p.L183P 0.14 deleterious(0.03) benign(0.004) TCGA-95-7039-01 11 608054 608064 CAGCCCGAAGG - PHRF1 Frame_Shift_Del p.S866Pfs*46 0.13 TCGA-95-7039-01 11 61249829 61249829 C A PPP1R32 Silent p.G52G 0.24 TCGA-95-7039-01 11 6245023 6245023 C A FAM160A2 Silent p.L198L 0.24 TCGA-95-7039-01 11 62763239 62763239 G T SLC22A8 Missense_Mutation p.T313N 0.08 deleterious(0.04) benign(0.006) TCGA-95-7039-01 11 62766429 62766429 A T SLC22A8 Missense_Mutation p.V242E 0.16 deleterious(0) possibly_damaging(0.719) TCGA-95-7039-01 11 64596949 64596949 C G CDC42BPG Missense_Mutation p.G1321R 0.42 deleterious(0.02) probably_damaging(0.986) TCGA-95-7039-01 11 64596950 64596950 C A CDC42BPG Missense_Mutation p.M1320I 0.43 tolerated(0.22) benign(0) TCGA-95-7039-01 11 65664461 65664461 G - FOSL1 Frame_Shift_Del p.P39Qfs*6 0.19 TCGA-95-7039-01 11 65788098 65788100 CCT ACCA CATSPER1 Splice_Site p.X643_splice 0.21 TCGA-95-7039-01 11 6661175 6661175 G T DCHS1 Missense_Mutation p.P557H 0.24 deleterious(0) possibly_damaging(0.908) TCGA-95-7039-01 11 67790069 67790069 C A ALDH3B1 Missense_Mutation p.T317K 0.39 deleterious(0) probably_damaging(0.981) TCGA-95-7039-01 11 6790029 6790029 G T OR2AG2 Silent p.R54R 0.30 TCGA-95-7039-01 11 6816649 6816649 G T OR6A2 Silent p.I97I 0.41 TCGA-95-7039-01 11 68777349 68777349 C T MRGPRF Nonsense_Mutation p.W7* 0.17 TCGA-95-7039-01 11 6898667 6898667 C A OR10A4 Silent p.P263P 0.26 TCGA-95-7039-01 11 70007788 70007788 A G ANO1 Missense_Mutation p.K614R 0.17 deleterious(0.01) benign(0.168) TCGA-95-7039-01 11 70277294 70277294 C G CTTN Intron 0.20 TCGA-95-7039-01 11 73066625 73066625 C A ARHGEF17 Missense_Mutation p.N1167K 0.20 deleterious(0) benign(0.345) TCGA-95-7039-01 11 76867736 76867736 C A MYO7A Missense_Mutation p.S167R 0.45 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 11 82924021 82924021 G T ANKRD42 Intron 0.40 TCGA-95-7039-01 11 8959302 8959303 - T ASCL3 Frame_Shift_Ins p.R136Kfs*8 0.17 TCGA-95-7039-01 11 92086959 92086959 G A FAT3 Missense_Mutation p.E561K 0.15 probably_damaging(0.999) TCGA-95-7039-01 11 92258098 92258098 C A FAT3 Silent p.A1197A 0.16 TCGA-95-7039-01 11 92538504 92538504 G C FAT3 Missense_Mutation p.V3028L 0.31 benign(0.033) TCGA-95-7039-01 11 94230194 94230194 G T ANKRD49 Intron 0.22 TCGA-95-7039-01 11 94963990 94963990 G C SESN3 Missense_Mutation p.A12G 0.24 tolerated_low_confidence(0.43) benign(0.002) TCGA-95-7039-01 12 100169423 100169423 C A ANKS1B Silent p.V288V 0.29 TCGA-95-7039-01 12 100728014 100728014 A T SCYL2 Missense_Mutation p.E611V 0.33 deleterious(0) probably_damaging(0.979) TCGA-95-7039-01 12 101295493 101295493 G T ANO4 5'UTR 0.17 TCGA-95-7039-01 12 101551060 101551060 C T SLC5A8 Silent p.L610L 0.15 TCGA-95-7039-01 12 10167231 10167231 C A CLEC12B Missense_Mutation p.N100K 0.26 tolerated(0.53) benign(0.001) TCGA-95-7039-01 12 102038463 102038463 C A MYBPC1 Missense_Mutation p.P260H 0.18 deleterious(0) probably_damaging(1) TCGA-95-7039-01 12 107712990 107712990 G T BTBD11 Silent p.L91L 0.33 TCGA-95-7039-01 12 108043084 108043084 G T BTBD11 Intron 0.47 TCGA-95-7039-01 12 109182873 109182873 C A SSH1 Missense_Mutation p.A681S 0.36 tolerated_low_confidence(0.61) benign(0.008) TCGA-95-7039-01 12 109200079 109200079 C G SSH1 Missense_Mutation p.E275Q 0.37 tolerated(0.18) possibly_damaging(0.627) TCGA-95-7039-01 12 111351114 111351114 C T MYL2 Missense_Mutation p.E97K 0.35 deleterious(0.03) probably_damaging(0.927) TCGA-95-7039-01 12 111729346 111729346 C A CUX2 Silent p.L142L 0.30 TCGA-95-7039-01 12 112622545 112622545 C T HECTD4 Missense_Mutation p.D3263N 0.25 benign(0.022) TCGA-95-7039-01 12 117175674 117175674 C T C12orf49 Missense_Mutation p.R11Q 0.40 deleterious(0.01) benign(0.08) TCGA-95-7039-01 12 117685232 117685232 C T NOS1 Missense_Mutation p.R949K 0.27 deleterious(0.01) possibly_damaging(0.74) TCGA-95-7039-01 12 122973980 122973980 T A ZCCHC8 Nonsense_Mutation p.K152* 0.32 TCGA-95-7039-01 12 126135313 126135313 T A TMEM132B Silent p.R571R 0.27 TCGA-95-7039-01 12 12966355 12966355 G T DDX47 Silent p.V18V 0.31 TCGA-95-7039-01 12 132403802 132403802 T G ULK1 Missense_Mutation p.F853V 0.37 deleterious(0) probably_damaging(0.996) TCGA-95-7039-01 12 133354352 133354352 G A GOLGA3 Missense_Mutation p.H1208Y 0.45 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 12 133372567 133372567 C A GOLGA3 Silent p.A780A 0.27 TCGA-95-7039-01 12 18573954 18573954 C A PIK3C2G Missense_Mutation p.P758T 0.38 deleterious(0) probably_damaging(1) TCGA-95-7039-01 12 18891436 18891436 G - CAPZA3 Frame_Shift_Del p.G79Afs*23 0.20 TCGA-95-7039-01 12 20790087 20790087 T G PDE3A Missense_Mutation p.I685M 0.19 deleterious(0) benign(0.197) TCGA-95-7039-01 12 21205070 21205070 T A SLCO1B7 Missense_Mutation p.Y411N 0.18 tolerated(0.27) benign(0.039) TCGA-95-7039-01 12 21531345 21531345 T G IAPP Missense_Mutation p.N85K 0.28 tolerated(0.09) benign(0.026) TCGA-95-7039-01 12 21531349 21531349 T A IAPP Missense_Mutation p.L87M 0.16 deleterious(0.02) possibly_damaging(0.831) TCGA-95-7039-01 12 22354535 22354535 C G ST8SIA1 Missense_Mutation p.R341T 0.22 deleterious(0) possibly_damaging(0.572) TCGA-95-7039-01 12 23687398 23687398 T A SOX5 Missense_Mutation p.M683L 0.39 tolerated(0.06) benign(0.012) TCGA-95-7039-01 12 23687399 23687399 G T SOX5 Silent p.A682A 0.39 TCGA-95-7039-01 12 25398220 25398220 A T KRAS Missense_Mutation p.D33E 0.31 tolerated(0.08) probably_damaging(0.924) TCGA-95-7039-01 12 25656679 25656679 G T IFLTD1 3'UTR 0.33 TCGA-95-7039-01 12 26808643 26808644 - A ITPR2 Frame_Shift_Ins p.E863* 0.12 TCGA-95-7039-01 12 27849605 27849605 A T REP15 Missense_Mutation p.E37V 0.59 deleterious(0.01) possibly_damaging(0.564) TCGA-95-7039-01 12 2932953 2932953 G T ITFG2 Nonsense_Mutation p.E362* 0.19 TCGA-95-7039-01 12 29650610 29650610 G C OVCH1 Missense_Mutation p.L4V 0.14 deleterious_low_confidence(0) unknown(0) TCGA-95-7039-01 12 29904677 29904677 C A TMTC1 Missense_Mutation p.G287V 0.25 tolerated(0.07) benign(0.009) TCGA-95-7039-01 12 29904703 29904703 C A TMTC1 Silent p.R278R 0.21 TCGA-95-7039-01 12 29911707 29911707 C A TMTC1 Missense_Mutation p.A162S 0.22 tolerated(0.64) benign(0.049) TCGA-95-7039-01 12 33559883 33559883 A G SYT10 Silent p.Y306Y 0.29 TCGA-95-7039-01 12 3677990 3677990 G C PRMT8 Silent p.V200V 0.20 TCGA-95-7039-01 12 42839970 42839970 T G PPHLN1 Missense_Mutation p.W410G 0.42 deleterious_low_confidence(0) benign(0.307) TCGA-95-7039-01 12 43858450 43858450 C T ADAMTS20 Missense_Mutation p.G485R 0.15 deleterious(0) possibly_damaging(0.786) TCGA-95-7039-01 12 4554610 4554610 G T FGF6 Missense_Mutation p.R43S 0.46 tolerated(0.06) benign(0.09) TCGA-95-7039-01 12 47471813 47471813 C A AMIGO2 Missense_Mutation p.G325C 0.18 tolerated(0.06) possibly_damaging(0.784) TCGA-95-7039-01 12 48723116 48723116 C A H1FNT Silent p.P14P 0.27 TCGA-95-7039-01 12 49332691 49332691 C A ARF3 3'UTR 0.17 TCGA-95-7039-01 12 49391466 49391466 C A DDN Missense_Mutation p.S398I 0.16 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-95-7039-01 12 50794684 50794684 G T LARP4 5'UTR 0.27 TCGA-95-7039-01 12 51723585 51723585 C G CELA1 Silent p.V214V 0.29 TCGA-95-7039-01 12 52946599 52946599 G A KRT71 Missense_Mutation p.A88V 0.15 tolerated(0.09) benign(0.008) TCGA-95-7039-01 12 53223890 53223890 C T KRT79 Missense_Mutation p.A258T 0.31 deleterious(0.02) benign(0.207) TCGA-95-7039-01 12 54910700 54910700 G T NCKAP1L Missense_Mutation p.R340L 0.19 deleterious(0.01) possibly_damaging(0.832) TCGA-95-7039-01 12 56089355 56089355 C A ITGA7 Missense_Mutation p.A656S 0.22 tolerated(0.25) benign(0.022) TCGA-95-7039-01 12 56351763 56351763 C A PMEL Missense_Mutation p.R192L 0.39 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 12 56726626 56726626 C A PAN2 Nonsense_Mutation p.E85* 0.24 TCGA-95-7039-01 12 57872537 57872537 G T ARHGAP9 Missense_Mutation p.P107Q 0.28 deleterious(0.01) possibly_damaging(0.716) TCGA-95-7039-01 12 58220837 58220837 T C CTDSP2 Missense_Mutation p.Q99R 0.40 tolerated(0.58) benign(0.002) TCGA-95-7039-01 12 63987882 63987882 G C DPY19L2 Missense_Mutation p.T522R 0.46 tolerated(0.28) benign(0.026) TCGA-95-7039-01 12 64041051 64041051 G A DPY19L2 Missense_Mutation p.P228L 0.20 tolerated(0.16) benign(0.02) TCGA-95-7039-01 12 66773138 66773138 G T GRIP1 Missense_Mutation p.P796Q 0.10 deleterious(0.01) possibly_damaging(0.458) TCGA-95-7039-01 12 6958844 6958844 C A CDCA3 Missense_Mutation p.E143D 0.46 tolerated(0.05) possibly_damaging(0.728) TCGA-95-7039-01 12 71977430 71977430 C G LGR5 Missense_Mutation p.P547R 0.21 deleterious(0) possibly_damaging(0.824) TCGA-95-7039-01 12 76453598 76453598 C T NAP1L1 Missense_Mutation p.D137N 0.22 deleterious(0.02) benign(0.081) TCGA-95-7039-01 12 7805356 7805356 G A APOBEC1 Silent p.Y40Y 0.20 TCGA-95-7039-01 12 78522620 78522620 C A NAV3 Missense_Mutation p.A1472D 0.33 tolerated(0.07) benign(0.342) TCGA-95-7039-01 12 80752087 80752087 G T OTOGL Missense_Mutation p.D2018Y 0.35 deleterious(0.01) possibly_damaging(0.652) TCGA-95-7039-01 12 81101569 81101569 C T MYF6 Missense_Mutation p.P24L 0.33 tolerated(0.12) benign(0.062) TCGA-95-7039-01 12 81110812 81110812 C A MYF5 5'UTR 0.22 TCGA-95-7039-01 12 85270331 85270331 C A SLC6A15 Missense_Mutation p.R271I 0.39 deleterious(0) probably_damaging(0.995) TCGA-95-7039-01 12 85466740 85466740 C T LRRIQ1 Silent p.H917H 0.45 TCGA-95-7039-01 12 86268206 86268207 - A NTS Frame_Shift_Ins p.L9Hfs*39 0.23 TCGA-95-7039-01 12 9348939 9348939 G A PZP Missense_Mutation p.P360L 0.21 deleterious(0) probably_damaging(0.996) TCGA-95-7039-01 12 977171 977171 G T WNK1 Intron 0.18 TCGA-95-7039-01 12 99020244 99020244 C A IKBIP Nonsense_Mutation p.E200* 0.25 TCGA-95-7039-01 13 101714375 101714375 A C NALCN Missense_Mutation p.V1567G 0.14 deleterious(0) probably_damaging(1) TCGA-95-7039-01 13 114175005 114175005 G A TMCO3 Missense_Mutation p.V434I 0.08 tolerated(0.71) benign(0.006) TCGA-95-7039-01 13 28122554 28122554 T A LNX2 Missense_Mutation p.H664L 0.22 deleterious(0) probably_damaging(1) TCGA-95-7039-01 13 29004227 29004227 A G FLT1 Missense_Mutation p.S356P 0.23 tolerated(0.53) benign(0.042) TCGA-95-7039-01 13 33275556 33275556 A G PDS5B Missense_Mutation p.I613V 0.65 tolerated(0.22) benign(0.171) TCGA-95-7039-01 13 35615209 35615209 G T NBEA Missense_Mutation p.R145L 0.35 deleterious(0) possibly_damaging(0.714) TCGA-95-7039-01 13 36367543 36367543 G T DCLK1 Missense_Mutation p.P673H 0.48 deleterious(0.04) probably_damaging(0.95) TCGA-95-7039-01 13 37679016 37679016 G T CSNK1A1L Nonsense_Mutation p.Y126* 0.11 TCGA-95-7039-01 13 38225495 38225495 G T TRPC4 Missense_Mutation p.S662R 0.16 deleterious(0) probably_damaging(0.996) TCGA-95-7039-01 13 38237773 38237773 G T TRPC4 Missense_Mutation p.L490M 0.11 deleterious(0.01) probably_damaging(0.97) TCGA-95-7039-01 13 43934144 43934144 C T ENOX1 Silent p.V144V 0.29 TCGA-95-7039-01 13 43935502 43935502 G T ENOX1 Missense_Mutation p.L99M 0.38 tolerated(0.44) probably_damaging(0.998) TCGA-95-7039-01 13 46287685 46287685 G A SPERT Silent p.L175L 0.12 TCGA-95-7039-01 13 49281037 49281037 C A CYSLTR2 Missense_Mutation p.S28R 0.15 deleterious(0.03) benign(0.032) TCGA-95-7039-01 13 52548750 52548750 A G ATP7B Silent p.N202N 0.20 TCGA-95-7039-01 13 52598351 52598351 A - ALG11 Frame_Shift_Del p.A163Lfs*2 0.14 TCGA-95-7039-01 13 52710340 52710340 C T NEK3 Silent p.Q345Q 0.25 TCGA-95-7039-01 13 53418746 53418746 G T PCDH8 Silent p.S1054S 0.18 TCGA-95-7039-01 13 58207659 58207659 G T PCDH17 Missense_Mutation p.G327W 0.13 deleterious(0) probably_damaging(1) TCGA-95-7039-01 13 58208940 58208940 G A PCDH17 Missense_Mutation p.G754R 0.21 tolerated(0.39) benign(0.358) TCGA-95-7039-01 13 58208942 58208942 G T PCDH17 Silent p.G754G 0.21 TCGA-95-7039-01 13 60348955 60348955 C T DIAPH3 Missense_Mutation p.G1056S 0.39 deleterious(0.01) possibly_damaging(0.513) TCGA-95-7039-01 13 60566710 60566710 C A DIAPH3 Missense_Mutation p.C341F 0.20 deleterious(0) probably_damaging(1) TCGA-95-7039-01 13 64321217 64321217 G T AL445989.1 Missense_Mutation p.G95V 0.26 unknown(0) TCGA-95-7039-01 13 70681505 70681505 C - KLHL1 Frame_Shift_Del p.Q110Rfs*16 0.21 TCGA-95-7039-01 13 72049304 72049304 G A DACH1 Silent p.G686G 0.40 TCGA-95-7039-01 13 72255995 72255995 G T DACH1 Missense_Mutation p.P301Q 0.36 benign(0.01) TCGA-95-7039-01 13 72255996 72255996 G C DACH1 Missense_Mutation p.P301A 0.36 benign(0.022) TCGA-95-7039-01 13 72255997 72255997 G T DACH1 Silent p.S300S 0.32 TCGA-95-7039-01 13 80911327 80911327 C A SPRY2 Missense_Mutation p.G172C 0.18 deleterious(0.02) possibly_damaging(0.707) TCGA-95-7039-01 13 84455035 84455035 C A SLITRK1 Missense_Mutation p.G203V 0.24 deleterious(0.04) possibly_damaging(0.889) TCGA-95-7039-01 13 84455189 84455189 C A SLITRK1 Missense_Mutation p.D152Y 0.22 deleterious(0.01) possibly_damaging(0.86) TCGA-95-7039-01 13 86368804 86368804 G C SLITRK6 Missense_Mutation p.L614V 0.22 deleterious(0) possibly_damaging(0.751) TCGA-95-7039-01 13 86370512 86370512 C A SLITRK6 Missense_Mutation p.M44I 0.24 deleterious(0.02) benign(0) TCGA-95-7039-01 13 95714958 95714958 C A ABCC4 Missense_Mutation p.Q1122H 0.22 deleterious(0) probably_damaging(0.995) TCGA-95-7039-01 13 97638907 97638907 C A OXGR1 3'UTR 0.47 TCGA-95-7039-01 13 98086712 98086712 C T RAP2A 5'UTR 0.19 TCGA-95-7039-01 13 99042248 99042248 G T FARP1 Missense_Mutation p.S298I 0.22 deleterious(0) possibly_damaging(0.87) TCGA-95-7039-01 14 100118597 100118597 G T HHIPL1 Nonsense_Mutation p.E98* 0.25 TCGA-95-7039-01 14 100182233 100182233 C - CYP46A1 Frame_Shift_Del p.R261Afs*5 0.24 TCGA-95-7039-01 14 100551124 100551125 AT - EVL Frame_Shift_Del p.I38Qfs*59 0.23 TCGA-95-7039-01 14 101488424 101488424 G T MIR379 RNA 0.25 TCGA-95-7039-01 14 102516461 102516461 G C DYNC1H1 Missense_Mutation p.A4580P 0.35 benign(0.167) TCGA-95-7039-01 14 105054645 105054645 G T C14orf180 Missense_Mutation p.R92S 0.30 tolerated(0.58) benign(0.008) TCGA-95-7039-01 14 105206120 105206120 A T ADSSL1 Missense_Mutation p.Q191L 0.46 tolerated(0.07) probably_damaging(0.935) TCGA-95-7039-01 14 105409436 105409436 C T AHNAK2 Missense_Mutation p.D4118N 0.21 probably_damaging(0.966) TCGA-95-7039-01 14 106109759 106109759 G T IGHG2 Missense_Mutation p.S254R 0.26 tolerated(0.37) probably_damaging(0.919) TCGA-95-7039-01 14 106926442 106926442 C T IGHV3-43 Missense_Mutation p.G34R 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.796) TCGA-95-7039-01 14 106967313 106967313 C T IGHV1-46 Silent p.E29E 0.19 TCGA-95-7039-01 14 107178997 107178997 C G IGHV2-70 Missense_Mutation p.Q60H 0.07 deleterious(0) probably_damaging(0.953) TCGA-95-7039-01 14 19377894 19377894 C A OR11H12 Missense_Mutation p.L101I 0.10 tolerated(0.09) benign(0.157) TCGA-95-7039-01 14 20010170 20010170 C A POTEM Missense_Mutation p.D330Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 14 20249031 20249031 G T OR4M1 Missense_Mutation p.V184F 0.07 deleterious(0.01) probably_damaging(0.987) TCGA-95-7039-01 14 20389373 20389373 G T OR4K5 Missense_Mutation p.S203I 0.39 deleterious(0) probably_damaging(0.991) TCGA-95-7039-01 14 20389492 20389493 - A OR4K5 Frame_Shift_Ins p.H243Qfs*27 0.13 TCGA-95-7039-01 14 20403925 20403925 G C OR4K1 Missense_Mutation p.V34L 0.20 tolerated(0.86) benign(0.003) TCGA-95-7039-01 14 20404324 20404324 C - OR4K1 Frame_Shift_Del p.P167Hfs*18 0.17 TCGA-95-7039-01 14 20665680 20665680 G T OR11G2 Missense_Mutation p.Q62H 0.51 deleterious(0.01) benign(0.039) TCGA-95-7039-01 14 20666300 20666300 C A OR11G2 Missense_Mutation p.A269E 0.11 tolerated(0.05) benign(0.151) TCGA-95-7039-01 14 21109704 21109704 C A OR6S1 Silent p.G49G 0.44 TCGA-95-7039-01 14 21167586 21167586 G A RNASE4 Missense_Mutation p.G19E 0.23 tolerated(0.13) benign(0.263) TCGA-95-7039-01 14 22192451 22192451 G T TRAV3 Missense_Mutation p.V76F 0.40 deleterious(0) benign(0.442) TCGA-95-7039-01 14 22309871 22309871 G T TRAV12-1 Missense_Mutation p.Q84H 0.14 tolerated(0.67) benign(0.018) TCGA-95-7039-01 14 22471641 22471641 T C TRAV18 Missense_Mutation p.S22P 0.54 deleterious(0.01) benign(0.018) TCGA-95-7039-01 14 22600744 22600744 T C TRAV8-7 Missense_Mutation p.V30A 0.28 deleterious(0) probably_damaging(0.969) TCGA-95-7039-01 14 22616550 22616550 C A TRAV27 Silent p.A97A 0.12 TCGA-95-7039-01 14 22919114 22919114 G A TRDJ1 Missense_Mutation p.R12H 0.23 unknown(0) TCGA-95-7039-01 14 22932185 22932185 T A TRDC Missense_Mutation p.V88E 0.11 tolerated(1) benign(0.031) TCGA-95-7039-01 14 23078735 23078735 C A ABHD4 Silent p.I286I 0.12 TCGA-95-7039-01 14 23871912 23871912 G T MYH6 Silent p.A332A 0.18 TCGA-95-7039-01 14 23889178 23889178 G T MYH7 Missense_Mutation p.A1201D 0.26 deleterious(0.01) probably_damaging(0.986) TCGA-95-7039-01 14 24737089 24737089 A G RABGGTA Missense_Mutation p.F408S 0.10 deleterious(0) probably_damaging(0.997) TCGA-95-7039-01 14 25077587 25077587 G T GZMH Silent p.P29P 0.10 TCGA-95-7039-01 14 25077588 25077588 G T GZMH Missense_Mutation p.P29H 0.11 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 14 26918139 26918139 C A NOVA1 Missense_Mutation p.G184C 0.06 deleterious(0) unknown(0) TCGA-95-7039-01 14 33291653 33291653 A G AKAP6 Missense_Mutation p.N1545S 0.15 deleterious_low_confidence(0) benign(0.05) TCGA-95-7039-01 14 33292084 33292084 A T AKAP6 Missense_Mutation p.T1689S 0.26 deleterious(0) probably_damaging(0.993) TCGA-95-7039-01 14 36785946 36785946 G A MBIP Missense_Mutation p.P68S 0.09 deleterious(0.01) probably_damaging(1) TCGA-95-7039-01 14 44975324 44975324 G C FSCB Silent p.T289T 0.09 TCGA-95-7039-01 14 45369870 45369870 A T C14orf28 Missense_Mutation p.R78W 0.26 deleterious_low_confidence(0) benign(0.319) TCGA-95-7039-01 14 45645576 45645576 A T FANCM Nonsense_Mutation p.R1207* 0.20 TCGA-95-7039-01 14 59757977 59757977 G T DAAM1 Missense_Mutation p.A76S 0.42 tolerated(0.35) unknown(0) TCGA-95-7039-01 14 61518616 61518616 G T SLC38A6 Missense_Mutation p.V388F 0.13 deleterious(0) probably_damaging(0.991) TCGA-95-7039-01 14 63174542 63174542 G T KCNH5 Missense_Mutation p.P884Q 0.14 deleterious_low_confidence(0) possibly_damaging(0.818) TCGA-95-7039-01 14 64408654 64408654 G T SYNE2 Missense_Mutation p.A97S 0.33 probably_damaging(0.997) TCGA-95-7039-01 14 70527586 70527586 C A SLC8A3 Missense_Mutation p.G619C 0.30 deleterious(0.01) possibly_damaging(0.849) TCGA-95-7039-01 14 70530647 70530647 C A SLC8A3 Intron 0.19 TCGA-95-7039-01 14 70633658 70633658 T A SLC8A3 Silent p.P494P 0.31 TCGA-95-7039-01 14 74874330 74874330 G T SYNDIG1L Missense_Mutation p.L209I 0.38 deleterious(0.04) probably_damaging(0.994) TCGA-95-7039-01 14 76966235 76966235 C T ESRRB Silent p.P442P 0.36 TCGA-95-7039-01 14 81259188 81259188 C A CEP128 Missense_Mutation p.Q492H 0.33 tolerated(0.06) benign(0.082) TCGA-95-7039-01 14 88729848 88729848 T A KCNK10 Missense_Mutation p.N34Y 0.06 tolerated_low_confidence(0.05) possibly_damaging(0.459) TCGA-95-7039-01 14 94007138 94007138 C A UNC79 Missense_Mutation p.H318Q 0.40 tolerated(0.08) probably_damaging(0.998) TCGA-95-7039-01 14 94914504 94914504 G T SERPINA11 Missense_Mutation p.T203K 0.36 deleterious(0) probably_damaging(0.948) TCGA-95-7039-01 14 94914644 94914644 G A SERPINA11 Silent p.S156S 0.29 TCGA-95-7039-01 14 95030053 95030053 C A SERPINA4 Silent p.S78S 0.20 TCGA-95-7039-01 14 96707667 96707667 C A BDKRB2 Silent p.I334I 0.21 TCGA-95-7039-01 15 100533317 100533317 C T ADAMTS17 Missense_Mutation p.R962K 0.29 tolerated(0.88) benign(0.004) TCGA-95-7039-01 15 20193360 20193360 C A IGHV3OR15-7 Missense_Mutation p.G4V 0.24 tolerated_low_confidence(0.44) benign(0.004) TCGA-95-7039-01 15 22368783 22368783 G T OR4M2 Missense_Mutation p.D70Y 0.23 deleterious(0) probably_damaging(0.976) TCGA-95-7039-01 15 22382574 22382574 C G OR4N4 Missense_Mutation p.F34L 0.12 tolerated(0.25) probably_damaging(0.995) TCGA-95-7039-01 15 22383165 22383165 A T OR4N4 Missense_Mutation p.E231D 0.09 deleterious(0.04) possibly_damaging(0.486) TCGA-95-7039-01 15 24921403 24921403 C T NPAP1 Missense_Mutation p.P130L 0.37 tolerated(0.35) benign(0.002) TCGA-95-7039-01 15 25200193 25200193 G T SNURF 5'UTR 0.37 TCGA-95-7039-01 15 25222171 25222171 C A SNRPN Missense_Mutation p.Q139K 0.41 tolerated(0.27) benign(0.328) TCGA-95-7039-01 15 25342831 25342831 T A SNORD116-25 RNA 0.39 TCGA-95-7039-01 15 28200349 28200349 C T OCA2 Silent p.Q599Q 0.63 TCGA-95-7039-01 15 33261322 33261322 C A FMN1 Missense_Mutation p.M637I 0.31 tolerated(0.52) unknown(0) TCGA-95-7039-01 15 33945067 33945067 C A RYR3 Missense_Mutation p.L1431M 0.61 benign(0.091) TCGA-95-7039-01 15 39884809 39884809 A T THBS1 Missense_Mutation p.N858I 0.45 deleterious(0) possibly_damaging(0.888) TCGA-95-7039-01 15 40657469 40657469 C A DISP2 Missense_Mutation p.P281T 0.12 tolerated(0.25) benign(0.287) TCGA-95-7039-01 15 40675063 40675063 G T KNSTRN Silent p.L9L 0.43 TCGA-95-7039-01 15 41829177 41829177 C G RPAP1 Silent p.P49P 0.18 TCGA-95-7039-01 15 41989078 41989078 A T MGA Nonsense_Mutation p.K624* 0.60 TCGA-95-7039-01 15 41989080 41989080 G A MGA Silent p.K624K 0.67 TCGA-95-7039-01 15 42840305 42840306 CA - LRRC57 Frame_Shift_Del p.L74Hfs*5 0.12 TCGA-95-7039-01 15 52074915 52074915 T C TMOD2 Intron 0.38 TCGA-95-7039-01 15 52562007 52562007 C A MYO5C Nonsense_Mutation p.E295* 0.35 TCGA-95-7039-01 15 53998260 53998260 A T WDR72 Silent p.R322R 0.37 TCGA-95-7039-01 15 56130727 56130727 C T NEDD4 Missense_Mutation p.D1050N 0.41 deleterious(0) probably_damaging(0.937) TCGA-95-7039-01 15 64204383 64204383 T A DAPK2 Missense_Mutation p.Q291L 0.27 tolerated(0.11) benign(0) TCGA-95-7039-01 15 73528767 73528767 G T NEO1 Missense_Mutation p.L457F 0.66 deleterious(0.01) probably_damaging(0.931) TCGA-95-7039-01 15 75982075 75982075 G T CSPG4 Missense_Mutation p.T444K 0.12 deleterious(0.04) benign(0.24) TCGA-95-7039-01 15 75982619 75982619 C T CSPG4 Missense_Mutation p.V263M 0.59 tolerated(0.28) benign(0.14) TCGA-95-7039-01 15 81561978 81561978 G T IL16 Missense_Mutation p.G222C 0.65 deleterious(0) probably_damaging(1) TCGA-95-7039-01 15 81582867 81582867 A T IL16 Missense_Mutation p.Q469L 0.61 tolerated(0.05) benign(0.092) TCGA-95-7039-01 15 83349497 83349497 A G AP3B2 Missense_Mutation p.L261P 0.26 deleterious(0.04) benign(0.039) TCGA-95-7039-01 15 84241444 84241444 G C SH3GL3 Missense_Mutation p.E153D 0.33 tolerated(0.19) probably_damaging(0.972) TCGA-95-7039-01 15 84245427 84245427 G T SH3GL3 Silent p.A186A 0.44 TCGA-95-7039-01 15 84651720 84651720 G C ADAMTSL3 Missense_Mutation p.D1114H 0.29 deleterious(0) probably_damaging(0.963) TCGA-95-7039-01 16 10788224 10788224 C T TEKT5 Silent p.L169L 0.18 TCGA-95-7039-01 16 11056400 11056400 A T CLEC16A Missense_Mutation p.T100S 0.42 tolerated(0.1) benign(0.168) TCGA-95-7039-01 16 14029051 14029051 G A ERCC4 Missense_Mutation p.R421K 0.26 tolerated(0.66) benign(0.003) TCGA-95-7039-01 16 1574791 1574791 G A IFT140 Silent p.V997V 0.22 TCGA-95-7039-01 16 17353102 17353102 G T XYLT1 Missense_Mutation p.P219H 0.17 tolerated_low_confidence(0.54) benign(0.003) TCGA-95-7039-01 16 18853565 18853565 C A SMG1 Missense_Mutation p.G2144V 0.30 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 16 20380973 20380973 A T PDILT Missense_Mutation p.N319K 0.22 deleterious(0.01) probably_damaging(0.92) TCGA-95-7039-01 16 20451195 20451195 A T ACSM5 Missense_Mutation p.Q537L 0.14 deleterious(0) probably_damaging(0.963) TCGA-95-7039-01 16 20489935 20489935 C A ACSM2A Missense_Mutation p.T406K 0.19 tolerated(1) benign(0.001) TCGA-95-7039-01 16 20634722 20634722 C T ACSM1 3'UTR 0.11 TCGA-95-7039-01 16 20996803 20996803 G A DNAH3 Missense_Mutation p.R2421C 0.28 deleterious(0) probably_damaging(1) TCGA-95-7039-01 16 2226101 2226101 G A TRAF7 Missense_Mutation p.G600S 0.19 deleterious(0.01) probably_damaging(1) TCGA-95-7039-01 16 2226102 2226102 G T TRAF7 Missense_Mutation p.G600V 0.20 deleterious(0) probably_damaging(1) TCGA-95-7039-01 16 2239298 2239298 T C CASKIN1 Missense_Mutation p.M143V 0.18 benign(0.004) TCGA-95-7039-01 16 23101980 23101980 C T USP31 Silent p.V460V 0.15 TCGA-95-7039-01 16 2314333 2314333 C A RNPS1 Splice_Site p.X24_splice 0.48 TCGA-95-7039-01 16 2522510 2522510 G T NTN3 Missense_Mutation p.G270C 0.17 deleterious(0) probably_damaging(0.984) TCGA-95-7039-01 16 27709764 27709764 A G KIAA0556 Silent p.A352A 0.29 TCGA-95-7039-01 16 2868930 2868930 C T PRSS21 Silent p.D170D 0.09 TCGA-95-7039-01 16 29897000 29897000 C A SEZ6L2 Nonsense_Mutation p.E427* 0.27 TCGA-95-7039-01 16 29900017 29900017 G T SEZ6L2 Silent p.R295R 0.23 TCGA-95-7039-01 16 31230632 31230632 G T TRIM72 Missense_Mutation p.G170V 0.12 tolerated(0.2) benign(0.1) TCGA-95-7039-01 16 3140594 3140594 C A ZSCAN10 Missense_Mutation p.G226W 0.13 deleterious(0.01) possibly_damaging(0.793) TCGA-95-7039-01 16 3191229 3191229 C T ZNF213 Missense_Mutation p.R421C 0.19 deleterious(0) probably_damaging(0.984) TCGA-95-7039-01 16 3367345 3367345 G T ZNF75A Nonsense_Mutation p.G123* 0.24 TCGA-95-7039-01 16 46705670 46705670 C A VPS35 Missense_Mutation p.V491L 0.31 tolerated(0.81) benign(0.01) TCGA-95-7039-01 16 5064994 5064994 G T SEC14L5 3'UTR 0.24 TCGA-95-7039-01 16 51171213 51171213 G T SALL1 Missense_Mutation p.P1262Q 0.36 tolerated(0.89) benign(0.223) TCGA-95-7039-01 16 51171227 51171227 G T SALL1 Missense_Mutation p.N1257K 0.28 deleterious(0) probably_damaging(0.997) TCGA-95-7039-01 16 51171426 51171426 G T SALL1 Missense_Mutation p.A1191E 0.15 deleterious(0) probably_damaging(0.993) TCGA-95-7039-01 16 51174255 51174255 C A SALL1 Missense_Mutation p.E626D 0.15 tolerated(0.43) benign(0.001) TCGA-95-7039-01 16 55525805 55525805 T A MMP2 Missense_Mutation p.Y425N 0.19 deleterious(0) probably_damaging(0.998) TCGA-95-7039-01 16 55532201 55532201 G C MMP2 Missense_Mutation p.G537A 0.27 deleterious(0) possibly_damaging(0.778) TCGA-95-7039-01 16 57060697 57060697 G T NLRC5 Missense_Mutation p.E614D 0.42 deleterious(0.01) probably_damaging(0.91) TCGA-95-7039-01 16 57449018 57449018 G T CCL17 Missense_Mutation p.E32D 0.17 tolerated(0.1) possibly_damaging(0.677) TCGA-95-7039-01 16 57600520 57600520 A T GPR114 Missense_Mutation p.T186S 0.32 tolerated(0.25) benign(0.119) TCGA-95-7039-01 16 66436744 66436744 C A CDH5 Missense_Mutation p.P676H 0.50 tolerated(0.26) possibly_damaging(0.759) TCGA-95-7039-01 16 66949151 66949151 C G CDH16 Silent p.R185R 0.20 TCGA-95-7039-01 16 67290373 67290373 G T SLC9A5 Missense_Mutation p.V305L 0.32 tolerated(0.12) benign(0.015) TCGA-95-7039-01 16 68156795 68156795 C T NFATC3 Missense_Mutation p.P337S 0.20 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 16 69965789 69965789 G T WWP2 Missense_Mutation p.A560S 0.21 tolerated(0.27) probably_damaging(0.997) TCGA-95-7039-01 16 71571745 71571745 G T CHST4 3'UTR 0.44 TCGA-95-7039-01 16 72993483 72993483 C A ZFHX3 Missense_Mutation p.A188S 0.28 benign(0.31) TCGA-95-7039-01 16 74640625 74640625 G C GLG1 Missense_Mutation p.T123S 0.22 tolerated(0.8) benign(0.008) TCGA-95-7039-01 16 74943460 74943460 C T WDR59 Silent p.G527G 0.27 TCGA-95-7039-01 16 78064496 78064496 G T CLEC3A Missense_Mutation p.G127C 0.13 deleterious(0.04) possibly_damaging(0.889) TCGA-95-7039-01 16 81161599 81161599 G T PKD1L2 RNA 0.29 TCGA-95-7039-01 16 82033530 82033530 G A SDR42E1 Missense_Mutation p.T123I 0.23 deleterious(0) probably_damaging(0.994) TCGA-95-7039-01 16 84256411 84256411 G T KCNG4 Missense_Mutation p.S324R 0.40 deleterious(0.04) possibly_damaging(0.674) TCGA-95-7039-01 16 87453466 87453466 G A ZCCHC14 Missense_Mutation p.P186L 0.11 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 16 87678336 87678336 C G JPH3 Silent p.T285T 0.25 TCGA-95-7039-01 16 87678337 87678337 G A JPH3 Missense_Mutation p.E286K 0.25 deleterious(0) probably_damaging(1) TCGA-95-7039-01 16 88695191 88695191 G T ZC3H18 Missense_Mutation p.R832L 0.11 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-95-7039-01 16 89347829 89347829 C A ANKRD11 Silent p.T1707T 0.23 TCGA-95-7039-01 16 89663001 89663001 G T CPNE7 Missense_Mutation p.G625V 0.08 tolerated(0.36) benign(0.033) TCGA-95-7039-01 16 9009313 9009313 C A USP7 Missense_Mutation p.G326C 0.28 deleterious(0) probably_damaging(1) TCGA-95-7039-01 16 961035 961035 G A LMF1 Silent p.L187L 0.45 TCGA-95-7039-01 17 10250078 10250078 A T MYH13 Silent p.S394S 0.42 TCGA-95-7039-01 17 10309664 10309664 C G MYH8 Missense_Mutation p.S741T 0.57 deleterious(0.02) possibly_damaging(0.525) TCGA-95-7039-01 17 10404639 10404639 G T MYH1 Missense_Mutation p.Q1176K 0.48 tolerated(0.11) possibly_damaging(0.705) TCGA-95-7039-01 17 10426462 10426462 A T MYH2 Nonsense_Mutation p.L1873* 0.31 TCGA-95-7039-01 17 10533637 10533637 C A MYH3 Missense_Mutation p.G1809W 0.26 deleterious(0) probably_damaging(1) TCGA-95-7039-01 17 11687751 11687751 C T DNAH9 Silent p.I2652I 0.26 TCGA-95-7039-01 17 11687858 11687858 T C DNAH9 Splice_Site p.X2687_splice 0.24 TCGA-95-7039-01 17 1371772 1371772 C A MYO1C Missense_Mutation p.A877S 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-95-7039-01 17 15964934 15964934 G A NCOR1 Missense_Mutation p.P1888S 0.25 benign(0.004) TCGA-95-7039-01 17 19470125 19470125 C T SLC47A1 Nonsense_Mutation p.Q377* 0.57 TCGA-95-7039-01 17 20354854 20354854 C A LGALS9B Missense_Mutation p.W287C 0.26 deleterious(0) probably_damaging(1) TCGA-95-7039-01 17 21731178 21731178 G T UBBP4 Silent p.L160L 0.24 TCGA-95-7039-01 17 26883216 26883216 C T PIGS Silent p.V383V 0.14 TCGA-95-7039-01 17 27579114 27579114 G T CRYBA1 Missense_Mutation p.G83V 0.15 deleterious(0) probably_damaging(0.99) TCGA-95-7039-01 17 31352947 31352947 G A ASIC2 Silent p.L398L 0.31 TCGA-95-7039-01 17 32685094 32685094 T A CCL13 Missense_Mutation p.W81R 0.18 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 17 33497163 33497163 G T UNC45B Silent p.R526R 0.20 TCGA-95-7039-01 17 34251770 34251770 C A RDM1 Nonsense_Mutation p.E136* 0.44 TCGA-95-7039-01 17 34958299 34958299 C A MRM1 Missense_Mutation p.F20L 0.17 tolerated_low_confidence(0.19) benign(0.001) TCGA-95-7039-01 17 36708782 36708782 T A SRCIN1 Missense_Mutation p.E794V 0.18 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 17 36963160 36963160 T A CWC25 Missense_Mutation p.M254L 0.38 tolerated(0.65) benign(0) TCGA-95-7039-01 17 38319962 38319962 G T CASC3 Silent p.R338R 0.15 TCGA-95-7039-01 17 39183248 39183248 C A KRTAP1-5 Missense_Mutation p.G54W 0.12 deleterious(0.01) unknown(0) TCGA-95-7039-01 17 39190682 39190682 G T KRTAP1-3 Missense_Mutation p.P131Q 0.06 deleterious(0) possibly_damaging(0.904) TCGA-95-7039-01 17 40001920 40001920 G A KLHL10 Silent p.E409E 0.19 TCGA-95-7039-01 17 40010890 40010890 T C KLHL11 Missense_Mutation p.Y410C 0.18 deleterious(0.01) probably_damaging(1) TCGA-95-7039-01 17 40174455 40174455 G T NKIRAS2 Missense_Mutation p.G45C 0.26 tolerated(0.07) probably_damaging(0.976) TCGA-95-7039-01 17 40315736 40315736 G A KCNH4 Nonsense_Mutation p.Q789* 0.28 TCGA-95-7039-01 17 41835995 41835995 C T SOST Missense_Mutation p.E39K 0.08 tolerated(0.15) benign(0.125) TCGA-95-7039-01 17 41955065 41955065 C A MPP2 3'UTR 0.16 TCGA-95-7039-01 17 42018976 42018976 C T PPY Missense_Mutation p.C16Y 0.19 deleterious(0) unknown(0) TCGA-95-7039-01 17 42451767 42451767 C A ITGA2B Silent p.L1005L 0.22 TCGA-95-7039-01 17 42457493 42457493 C A ITGA2B Silent p.R543R 0.29 TCGA-95-7039-01 17 42457494 42457494 C A ITGA2B Missense_Mutation p.R543L 0.26 tolerated(0.09) possibly_damaging(0.475) TCGA-95-7039-01 17 45361879 45361879 G C ITGB3 Missense_Mutation p.M144I 0.20 deleterious(0) probably_damaging(0.998) TCGA-95-7039-01 17 45695735 45695735 T C NPEPPS Missense_Mutation p.M772T 0.14 deleterious(0.01) possibly_damaging(0.628) TCGA-95-7039-01 17 46606916 46606916 G A HOXB1 Missense_Mutation p.T300I 0.20 deleterious(0.01) possibly_damaging(0.46) TCGA-95-7039-01 17 46606917 46606917 T G HOXB1 Missense_Mutation p.T300P 0.21 deleterious(0.01) possibly_damaging(0.46) TCGA-95-7039-01 17 46608020 46608020 C A HOXB1 Missense_Mutation p.G83W 0.31 deleterious(0) probably_damaging(1) TCGA-95-7039-01 17 48683512 48683512 T C CACNA1G Intron 0.24 TCGA-95-7039-01 17 48913470 48913470 G T WFIKKN2 Missense_Mutation p.A58S 0.50 tolerated(0.13) probably_damaging(1) TCGA-95-7039-01 17 54912249 54912249 G T DGKE Silent p.L31L 0.15 TCGA-95-7039-01 17 56233080 56233080 G T OR4D1 Missense_Mutation p.C189F 0.17 deleterious(0) probably_damaging(0.992) TCGA-95-7039-01 17 56247175 56247175 C A OR4D2 Silent p.S53S 0.13 TCGA-95-7039-01 17 56329618 56329618 A G LPO Missense_Mutation p.T286A 0.36 tolerated(0.62) benign(0.023) TCGA-95-7039-01 17 56544284 56544284 G T HSF5 Missense_Mutation p.P328T 0.23 tolerated(0.07) possibly_damaging(0.835) TCGA-95-7039-01 17 61898278 61898278 G A FTSJ3 Missense_Mutation p.P665S 0.31 deleterious(0.02) possibly_damaging(0.79) TCGA-95-7039-01 17 62018185 62018185 G C SCN4A Silent p.P1819P 0.20 TCGA-95-7039-01 17 62496295 62496295 G C DDX5 Missense_Mutation p.Q531E 0.19 tolerated_low_confidence(0.58) benign(0.372) TCGA-95-7039-01 17 63847968 63847968 T A CEP112 Missense_Mutation p.E783V 0.19 deleterious(0) possibly_damaging(0.738) TCGA-95-7039-01 17 64125897 64125897 G A CEP112 Silent p.D203D 0.14 TCGA-95-7039-01 17 66440643 66440643 T G WIPI1 Missense_Mutation p.N141H 0.39 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 17 66925834 66925834 C T ABCA8 Nonsense_Mutation p.W269* 0.35 TCGA-95-7039-01 17 67501928 67501928 G T MAP2K6 Missense_Mutation p.K8N 0.35 deleterious(0.01) possibly_damaging(0.616) TCGA-95-7039-01 17 68172348 68172348 A T KCNJ2 Missense_Mutation p.S390C 0.20 deleterious(0.03) benign(0.141) TCGA-95-7039-01 17 6909277 6909277 G A ALOX12 Missense_Mutation p.R450Q 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-95-7039-01 17 7107104 7107104 C A DLG4 Missense_Mutation p.G124V 0.38 deleterious(0) probably_damaging(0.995) TCGA-95-7039-01 17 7107105 7107105 C A DLG4 Missense_Mutation p.G124C 0.38 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 17 72367926 72367926 C A GPR142 Silent p.S192S 0.36 TCGA-95-7039-01 17 7329778 7329778 A G C17orf74 Silent p.S156S 0.28 TCGA-95-7039-01 17 74732406 74732406 C T SRSF2 Missense_Mutation p.R168K 0.17 tolerated(0.61) unknown(0) TCGA-95-7039-01 17 75303255 75303255 A T SEPT9 Missense_Mutation p.R18W 0.34 deleterious_low_confidence(0) benign(0.074) TCGA-95-7039-01 17 7577120 7577120 C A TP53 Missense_Mutation p.R273L 0.71 deleterious(0) probably_damaging(0.993) TCGA-95-7039-01 17 7612491 7612491 C A EFNB3 Missense_Mutation p.P207H 0.36 tolerated(0.05) benign(0.204) TCGA-95-7039-01 17 76135285 76135285 C T TMC8 Silent p.A622A 0.09 TCGA-95-7039-01 17 78083808 78083808 G - GAA Frame_Shift_Del p.V466Ffs*11 0.16 TCGA-95-7039-01 17 78316967 78316967 A G RNF213 Missense_Mutation p.M2009V 0.21 benign(0.005) TCGA-95-7039-01 17 78968447 78968447 G T CHMP6 Nonsense_Mutation p.E44* 0.47 TCGA-95-7039-01 17 79516286 79516286 C T C17orf70 Missense_Mutation p.S450N 0.15 tolerated(0.65) benign(0.003) TCGA-95-7039-01 17 80332573 80332573 G T UTS2R Missense_Mutation p.V125L 0.29 tolerated(0.22) benign(0.042) TCGA-95-7039-01 17 8049961 8049961 C A PER1 Missense_Mutation p.A620S 0.26 tolerated(0.8) benign(0.001) TCGA-95-7039-01 17 8785176 8785176 C T PIK3R5 Missense_Mutation p.R743H 0.23 tolerated(0.36) benign(0.021) TCGA-95-7039-01 18 10681675 10681675 C A PIEZO2 Missense_Mutation p.A2475S 0.16 tolerated(0.76) benign(0.001) TCGA-95-7039-01 18 12697226 12697227 - C CEP76 Frame_Shift_Ins p.V235Cfs*17 0.38 TCGA-95-7039-01 18 21735744 21735744 T C CABYR Silent p.S93S 0.51 TCGA-95-7039-01 18 2555033 2555033 C A METTL4 Missense_Mutation p.R155M 0.33 deleterious(0) probably_damaging(0.928) TCGA-95-7039-01 18 25565563 25565563 C A CDH2 Missense_Mutation p.G635V 0.15 deleterious(0.01) probably_damaging(0.959) TCGA-95-7039-01 18 25565564 25565564 C A CDH2 Nonsense_Mutation p.G635* 0.21 TCGA-95-7039-01 18 30092431 30092431 C G WBP11P1 RNA 0.15 TCGA-95-7039-01 18 31325106 31325106 C A ASXL3 Missense_Mutation p.P1765Q 0.31 probably_damaging(0.999) TCGA-95-7039-01 18 31326041 31326041 A T ASXL3 Missense_Mutation p.S2077C 0.13 probably_damaging(0.998) TCGA-95-7039-01 18 33610792 33610792 T G RPRD1A Silent p.G155G 0.13 TCGA-95-7039-01 18 43224063 43224063 C A SLC14A2 Missense_Mutation p.P430H 0.20 deleterious(0) probably_damaging(0.998) TCGA-95-7039-01 18 47527634 47527634 G A MYO5B Silent p.P201P 0.15 TCGA-95-7039-01 18 50683813 50683813 G T DCC Missense_Mutation p.R450L 0.21 deleterious(0) possibly_damaging(0.567) TCGA-95-7039-01 18 50866234 50866234 G A DCC Silent p.V772V 0.17 TCGA-95-7039-01 18 5397300 5397300 C G EPB41L3 Silent p.A866A 0.15 TCGA-95-7039-01 18 54688028 54688028 G T WDR7 Missense_Mutation p.G1406V 0.16 deleterious(0) probably_damaging(1) TCGA-95-7039-01 18 54815092 54815092 A G BOD1L2 3'UTR 0.39 TCGA-95-7039-01 18 55024505 55024505 C A ST8SIA3 Missense_Mutation p.L222I 0.22 probably_damaging(0.999) TCGA-95-7039-01 18 55103647 55103647 C T ONECUT2 Silent p.G233G 0.13 TCGA-95-7039-01 18 56409154 56409154 T C MALT1 Missense_Mutation p.L554S 0.19 deleterious(0.03) probably_damaging(0.971) TCGA-95-7039-01 18 61232706 61232706 C A SERPINB12 Missense_Mutation p.T225K 0.15 tolerated(0.27) benign(0.003) TCGA-95-7039-01 18 61328425 61328425 G T SERPINB3 Missense_Mutation p.T9N 0.15 deleterious(0.04) benign(0.345) TCGA-95-7039-01 18 66504519 66504519 A G CCDC102B Silent p.Q173Q 0.17 TCGA-95-7039-01 18 67863821 67863821 C A RTTN Missense_Mutation p.V253L 0.38 tolerated(0.54) benign(0.228) TCGA-95-7039-01 18 74583718 74583718 C - ZNF236 Frame_Shift_Del p.P200Rfs*13 0.22 TCGA-95-7039-01 18 76754811 76754811 C A SALL3 Missense_Mutation p.S940R 0.38 deleterious(0.04) possibly_damaging(0.78) TCGA-95-7039-01 18 9887046 9887046 G A TXNDC2 Silent p.K190K 0.36 TCGA-95-7039-01 19 10107362 10107362 G A COL5A3 Missense_Mutation p.P423S 0.36 unknown(0) TCGA-95-7039-01 19 1043816 1043816 C G ABCA7 Missense_Mutation p.D341E 0.20 deleterious(0.03) benign(0.26) TCGA-95-7039-01 19 12949442 12949442 G A MAST1 Missense_Mutation p.G19D 0.28 tolerated_low_confidence(0.41) benign(0.001) TCGA-95-7039-01 19 14266339 14266339 T A LPHN1 Missense_Mutation p.K1047N 0.46 tolerated(0.07) benign(0.021) TCGA-95-7039-01 19 14885070 14885070 C T EMR2 Missense_Mutation p.R27K 0.19 tolerated(1) benign(0.002) TCGA-95-7039-01 19 15064949 15064949 G T SLC1A6 Silent p.I454I 0.27 TCGA-95-7039-01 19 15905108 15905108 G A OR10H5 Missense_Mutation p.D84N 0.07 tolerated(0.3) benign(0.337) TCGA-95-7039-01 19 16595992 16595992 C T CALR3 Silent p.K158K 0.32 TCGA-95-7039-01 19 17369165 17369165 A G USHBP1 Missense_Mutation p.L359P 0.23 deleterious(0) probably_damaging(0.989) TCGA-95-7039-01 19 18895885 18895885 C T COMP Missense_Mutation p.G579S 0.26 tolerated(0.15) probably_damaging(1) TCGA-95-7039-01 19 19338321 19338321 C A NCAN Missense_Mutation p.P631H 0.24 deleterious(0) probably_damaging(0.998) TCGA-95-7039-01 19 21240398 21240398 C G ZNF430 Silent p.P428P 0.26 TCGA-95-7039-01 19 22155018 22155018 C T ZNF208 Missense_Mutation p.A940T 0.19 tolerated(1) unknown(0) TCGA-95-7039-01 19 22156554 22156554 C A ZNF208 Nonsense_Mutation p.E428* 0.27 TCGA-95-7039-01 19 22256291 22256291 G T ZNF257 Missense_Mutation p.D51Y 0.24 deleterious(0.02) possibly_damaging(0.885) TCGA-95-7039-01 19 22939489 22939489 G T ZNF99 3'Flank 0.13 TCGA-95-7039-01 19 29698967 29698967 C A UQCRFS1 Nonsense_Mutation p.E105* 0.35 TCGA-95-7039-01 19 30199212 30199212 C A C19orf12 Missense_Mutation p.A48S 0.17 tolerated(0.12) benign(0.127) TCGA-95-7039-01 19 30308449 30308449 G T CCNE1 Splice_Site p.X154_splice 0.15 TCGA-95-7039-01 19 30935048 30935048 C A ZNF536 Silent p.R193R 0.23 TCGA-95-7039-01 19 33355660 33355660 G A SLC7A9 Missense_Mutation p.S37F 0.18 tolerated(0.05) possibly_damaging(0.723) TCGA-95-7039-01 19 33597774 33597774 G T GPATCH1 Silent p.R418R 0.39 TCGA-95-7039-01 19 3532599 3532599 C T FZR1 Missense_Mutation p.T398M 0.28 deleterious(0) probably_damaging(0.989) TCGA-95-7039-01 19 35941285 35941285 G T FFAR2 Silent p.L223L 0.22 TCGA-95-7039-01 19 36562599 36562599 G T WDR62 Missense_Mutation p.A342S 0.66 tolerated(0.19) possibly_damaging(0.665) TCGA-95-7039-01 19 37368191 37368191 A T ZNF345 Missense_Mutation p.K153N 0.18 deleterious(0) probably_damaging(0.995) TCGA-95-7039-01 19 3779011 3779011 C A MATK Silent p.A393A 0.15 TCGA-95-7039-01 19 38609996 38609996 C T SIPA1L3 Missense_Mutation p.P781L 0.15 deleterious(0) probably_damaging(1) TCGA-95-7039-01 19 38876354 38876354 G T GGN Silent p.P516P 0.38 TCGA-95-7039-01 19 38934251 38934251 C A RYR1 Silent p.L108L 0.11 TCGA-95-7039-01 19 39408393 39408393 C A SARS2 Missense_Mutation p.E379D 0.31 tolerated(0.16) possibly_damaging(0.453) TCGA-95-7039-01 19 41312536 41312536 G T EGLN2 Missense_Mutation p.C307F 0.25 deleterious(0.03) benign(0.139) TCGA-95-7039-01 19 41447987 41447987 C G AC092071.1 5'Flank 0.17 TCGA-95-7039-01 19 43439795 43439795 C A PSG7 Missense_Mutation p.G64V 0.49 deleterious(0) probably_damaging(0.922) TCGA-95-7039-01 19 43519313 43519313 C G PSG11 Missense_Mutation p.A307P 0.66 deleterious(0.04) probably_damaging(0.95) TCGA-95-7039-01 19 43698662 43698662 G A PSG4 Missense_Mutation p.S358F 0.57 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 19 45391414 45391414 A G PVRL2 Silent p.G465G 0.21 TCGA-95-7039-01 19 48640796 48640796 T A LIG1 Missense_Mutation p.R413W 0.27 deleterious(0.03) possibly_damaging(0.673) TCGA-95-7039-01 19 49183658 49183658 C A RN7SL345P 5'Flank 0.38 TCGA-95-7039-01 19 49244675 49244675 G T IZUMO1 Missense_Mutation p.A272E 0.30 tolerated(0.85) benign(0.009) TCGA-95-7039-01 19 50340169 50340169 A T MED25 Missense_Mutation p.M738L 0.33 deleterious_low_confidence(0.01) benign(0.03) TCGA-95-7039-01 19 51135839 51135839 C G SYT3 Silent p.L126L 0.55 TCGA-95-7039-01 19 51171708 51171708 C T SHANK1 Missense_Mutation p.R1170H 0.41 unknown(0) TCGA-95-7039-01 19 51175344 51175344 G - SHANK1 Frame_Shift_Del p.Q869Sfs*16 0.59 TCGA-95-7039-01 19 51379746 51379746 G A KLK2 Silent p.L75L 0.32 TCGA-95-7039-01 19 51410274 51410274 C A KLK4 Silent p.P227P 0.25 TCGA-95-7039-01 19 51670964 51670964 A G CTD-3187F8.14 Intron 0.29 TCGA-95-7039-01 19 51918453 51918453 G T SIGLEC10 Missense_Mutation p.L438I 0.22 deleterious(0.01) possibly_damaging(0.896) TCGA-95-7039-01 19 52004947 52004947 C A SIGLEC12 Missense_Mutation p.G14V 0.57 deleterious(0.03) probably_damaging(0.953) TCGA-95-7039-01 19 52403449 52403449 G A ZNF649 5'UTR 0.18 TCGA-95-7039-01 19 52941322 52941322 C - ZNF534 Frame_Shift_Del p.R217Vfs*3 0.20 TCGA-95-7039-01 19 53013861 53013861 C T ZNF578 Missense_Mutation p.S76L 0.23 deleterious(0.05) probably_damaging(0.99) TCGA-95-7039-01 19 54201656 54201656 C A MIR523 RNA 0.54 TCGA-95-7039-01 19 54758761 54758762 - G LILRB5 Frame_Shift_Ins p.L365Afs*11 0.20 TCGA-95-7039-01 19 54818758 54818758 C A LILRA5 Silent p.G280G 0.69 TCGA-95-7039-01 19 54850149 54850149 G T LILRA4 Silent p.R20R 0.51 TCGA-95-7039-01 19 55175231 55175231 C A LILRB4 Silent p.T30T 0.19 TCGA-95-7039-01 19 55177354 55177354 C A LILRB4 Missense_Mutation p.H282Q 0.49 tolerated(0.17) benign(0.024) TCGA-95-7039-01 19 55222078 55222078 C A AC098784.2 3'Flank 0.45 TCGA-95-7039-01 19 55301498 55301498 T G CTB-61M7.1 RNA 0.28 TCGA-95-7039-01 19 55449504 55449504 A G NLRP7 Silent p.F679F 0.10 TCGA-95-7039-01 19 55815133 55815133 G - BRSK1 Frame_Shift_Del p.G410Vfs*36 0.24 TCGA-95-7039-01 19 56203177 56203177 G T EPN1 Missense_Mutation p.D360Y 0.45 deleterious(0.01) benign(0.037) TCGA-95-7039-01 19 57325715 57325715 T A PEG3 Silent p.A1365A 0.32 TCGA-95-7039-01 19 57803294 57803294 A G ZNF460 Missense_Mutation p.N462S 0.29 tolerated(0.42) benign(0.147) TCGA-95-7039-01 19 58084091 58084091 C A ZNF416 Missense_Mutation p.S394I 0.55 tolerated(0.23) benign(0.244) TCGA-95-7039-01 19 58084093 58084093 T G ZNF416 Missense_Mutation p.Q393H 0.57 tolerated(0.12) benign(0.202) TCGA-95-7039-01 19 58490783 58490783 T A ZNF606 Missense_Mutation p.H422L 0.66 deleterious(0.01) benign(0.029) TCGA-95-7039-01 19 58724056 58724056 G T ZNF274 Silent p.G502G 0.31 TCGA-95-7039-01 19 7125416 7125416 T G INSR Missense_Mutation p.I1046L 0.16 tolerated(0.08) benign(0.03) TCGA-95-7039-01 19 7143017 7143017 G A INSR Silent p.S784S 0.10 TCGA-95-7039-01 19 746629 746629 G C PALM Missense_Mutation p.E327Q 0.25 deleterious(0) probably_damaging(1) TCGA-95-7039-01 19 757678 757678 G T MISP Silent p.V244V 0.56 TCGA-95-7039-01 19 8564440 8564440 C A PRAM1 Silent p.P84P 0.09 TCGA-95-7039-01 19 8922257 8922257 C A ZNF558 Missense_Mutation p.K303N 0.31 tolerated(0.25) probably_damaging(0.977) TCGA-95-7039-01 19 9019294 9019294 G A MUC16 Silent p.F12531F 0.38 TCGA-95-7039-01 19 9048196 9048196 T A MUC16 Silent p.S11145S 0.11 TCGA-95-7039-01 19 9058542 9058542 G A MUC16 Missense_Mutation p.T9635I 0.11 unknown(0) TCGA-95-7039-01 19 9063543 9063543 G C MUC16 Missense_Mutation p.T7968S 0.42 unknown(0) TCGA-95-7039-01 19 9069697 9069697 T A MUC16 Missense_Mutation p.S5917C 0.43 unknown(0) TCGA-95-7039-01 19 9075151 9075151 G T MUC16 Missense_Mutation p.P4099T 0.13 unknown(0) TCGA-95-7039-01 19 9083001 9083001 C A MUC16 Missense_Mutation p.R2938S 0.40 unknown(0) TCGA-95-7039-01 19 9084796 9084796 G T MUC16 Missense_Mutation p.T2340K 0.26 unknown(0) TCGA-95-7039-01 19 9090897 9090897 G T MUC16 Silent p.L306L 0.26 TCGA-95-7039-01 19 9408584 9408584 C A ZNF699 Missense_Mutation p.Q86H 0.10 tolerated(0.18) benign(0.259) TCGA-95-7039-01 19 9584916 9584916 C T ZNF560 Missense_Mutation p.R39K 0.14 tolerated(0.98) benign(0.001) TCGA-95-7039-01 1 102296235 102296235 T A OLFM3 Missense_Mutation p.H122L 0.19 tolerated(0.19) benign(0.171) TCGA-95-7039-01 1 104113194 104113194 C - AMY2B Intron 0.15 TCGA-95-7039-01 1 10711081 10711081 C A CASZ1 Silent p.P911P 0.15 TCGA-95-7039-01 1 108145771 108145771 A G VAV3 Missense_Mutation p.M677T 0.15 deleterious(0) possibly_damaging(0.832) TCGA-95-7039-01 1 108313279 108313279 T G VAV3 Missense_Mutation p.E209D 0.10 tolerated(0.63) probably_damaging(0.946) TCGA-95-7039-01 1 108507484 108507484 G T VAV3 Missense_Mutation p.P3Q 0.46 tolerated(0.34) benign(0.324) TCGA-95-7039-01 1 109554149 109554149 T C WDR47 Silent p.A180A 0.15 TCGA-95-7039-01 1 109795090 109795090 G T CELSR2 Missense_Mutation p.D797Y 0.26 deleterious(0) probably_damaging(1) TCGA-95-7039-01 1 110257957 110257957 C A GSTM5 Intron 0.43 TCGA-95-7039-01 1 110740984 110740984 C T SLC6A17 Missense_Mutation p.S701L 0.17 tolerated_low_confidence(0.21) benign(0.196) TCGA-95-7039-01 1 110996618 110996618 C A PROK1 Silent p.T36T 0.17 TCGA-95-7039-01 1 11194472 11194472 C A MTOR Missense_Mutation p.A1728S 0.58 tolerated(0.61) benign(0.163) TCGA-95-7039-01 1 112318662 112318662 T G KCND3 3'UTR 0.57 TCGA-95-7039-01 1 115130046 115130046 G A DENND2C Missense_Mutation p.S906L 0.37 tolerated(0.06) possibly_damaging(0.505) TCGA-95-7039-01 1 115168040 115168040 T A DENND2C Missense_Mutation p.K189M 0.10 deleterious(0) probably_damaging(0.968) TCGA-95-7039-01 1 119964541 119964541 C A HSD3B2 Missense_Mutation p.N139K 0.34 deleterious(0.01) probably_damaging(0.976) TCGA-95-7039-01 1 12374349 12374349 C A VPS13D Silent p.T2371T 0.43 TCGA-95-7039-01 1 1256375 1256375 C A CPSF3L Splice_Site p.X48_splice 0.19 TCGA-95-7039-01 1 12853545 12853545 C A PRAMEF1 Missense_Mutation p.Q57K 0.11 deleterious(0.02) probably_damaging(0.979) TCGA-95-7039-01 1 144903151 144903151 C A PDE4DIP Missense_Mutation p.R914L 0.33 deleterious(0) probably_damaging(0.982) TCGA-95-7039-01 1 145414786 145414786 G T HFE2 Missense_Mutation p.G2V 0.32 deleterious_low_confidence(0) unknown(0) TCGA-95-7039-01 1 145560150 145560150 G T ANKRD35 Silent p.A212A 0.43 TCGA-95-7039-01 1 145562978 145562978 C A ANKRD35 Missense_Mutation p.A889D 0.13 deleterious(0.03) benign(0.35) TCGA-95-7039-01 1 146055374 146055374 T C NBPF11 Silent p.A137A 0.09 TCGA-95-7039-01 1 1463089 1463089 T C ATAD3A Missense_Mutation p.L499P 0.17 deleterious(0) probably_damaging(0.99) TCGA-95-7039-01 1 147230755 147230755 C T GJA5 Missense_Mutation p.V198I 0.22 tolerated(0.9) benign(0.029) TCGA-95-7039-01 1 148252012 148252012 G A NBPF20 Nonsense_Mutation p.Q4577* 0.38 TCGA-95-7039-01 1 148932898 148932898 C G RP11-14N7.2 RNA 0.05 TCGA-95-7039-01 1 151131197 151131197 C A TNFAIP8L2 Missense_Mutation p.S8R 0.12 deleterious(0.03) benign(0.289) TCGA-95-7039-01 1 151774717 151774717 A G LINGO4 Missense_Mutation p.L155P 0.16 deleterious(0) probably_damaging(0.998) TCGA-95-7039-01 1 152084342 152084342 G T TCHH Missense_Mutation p.Q451K 0.23 unknown(0) TCGA-95-7039-01 1 152188238 152188238 G T HRNR Missense_Mutation p.S1956Y 0.04 unknown(0) TCGA-95-7039-01 1 152275457 152275457 G T FLG Missense_Mutation p.Q3969K 0.51 unknown(0) TCGA-95-7039-01 1 152275775 152275775 C A FLG Missense_Mutation p.V3863F 0.13 unknown(0) TCGA-95-7039-01 1 152280612 152280612 C T FLG Silent p.E2250E 0.21 TCGA-95-7039-01 1 152281738 152281738 C A FLG Missense_Mutation p.G1875V 0.17 probably_damaging(0.953) TCGA-95-7039-01 1 152284273 152284273 C G FLG Missense_Mutation p.G1030A 0.45 probably_damaging(0.994) TCGA-95-7039-01 1 152326860 152326860 G T FLG2 Silent p.G1134G 0.22 TCGA-95-7039-01 1 152586433 152586433 T A LCE3B Silent p.S49S 0.17 TCGA-95-7039-01 1 153028957 153028957 C A SPRR2A 3'UTR 0.22 TCGA-95-7039-01 1 154108410 154108410 G T NUP210L Missense_Mutation p.Q297K 0.17 tolerated(0.09) benign(0.265) TCGA-95-7039-01 1 154317158 154317158 G T ATP8B2 Missense_Mutation p.G761V 0.22 tolerated(0.38) benign(0.017) TCGA-95-7039-01 1 154544056 154544056 A T CHRNB2 Missense_Mutation p.I253F 0.52 deleterious(0) possibly_damaging(0.812) TCGA-95-7039-01 1 155451048 155451048 G - ASH1L Frame_Shift_Del p.S538Lfs*13 0.10 TCGA-95-7039-01 1 156105882 156105882 A G LMNA Missense_Mutation p.Y376C 0.24 deleterious(0) probably_damaging(0.998) TCGA-95-7039-01 1 156280816 156280816 C A CCT3 Missense_Mutation p.Q442H 0.09 tolerated(0.12) benign(0.025) TCGA-95-7039-01 1 156565192 156565192 C T GPATCH4 Missense_Mutation p.G314E 0.27 tolerated_low_confidence(0.43) benign(0.001) TCGA-95-7039-01 1 156617404 156617404 C T BCAN Nonsense_Mutation p.Q191* 0.10 TCGA-95-7039-01 1 156906634 156906634 T G ARHGEF11 Missense_Mutation p.H1535P 0.18 deleterious_low_confidence(0.01) benign(0.377) TCGA-95-7039-01 1 157497563 157497563 G T FCRL5 Missense_Mutation p.H602N 0.17 deleterious(0.01) possibly_damaging(0.881) TCGA-95-7039-01 1 157665394 157665394 G T FCRL3 Missense_Mutation p.P379Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 1 158590119 158590119 C T SPTA1 Silent p.E2086E 0.23 TCGA-95-7039-01 1 158670034 158670034 G T OR6K2 Missense_Mutation p.P137T 0.17 tolerated(0.16) possibly_damaging(0.616) TCGA-95-7039-01 1 158670151 158670151 G C OR6K2 Missense_Mutation p.L98V 0.17 deleterious(0.04) benign(0.224) TCGA-95-7039-01 1 158686986 158686986 T A OR6K3 Missense_Mutation p.Q307L 0.13 tolerated(0.08) benign(0.013) TCGA-95-7039-01 1 158990202 158990202 A C IFI16 Silent p.T348T 0.23 TCGA-95-7039-01 1 159174646 159174646 C A DARC 5'Flank 0.13 TCGA-95-7039-01 1 159409967 159409967 C T OR10J1 Missense_Mutation p.P140L 0.20 deleterious(0.01) probably_damaging(1) TCGA-95-7039-01 1 160012258 160012258 C G KCNJ10 Missense_Mutation p.G22A 0.11 tolerated(0.07) benign(0.013) TCGA-95-7039-01 1 160313244 160313244 C G NCSTN Missense_Mutation p.L20V 0.23 tolerated_low_confidence(0.14) benign(0.049) TCGA-95-7039-01 1 160580462 160580462 G T SLAMF1 3'UTR 0.32 TCGA-95-7039-01 1 161044151 161044151 T A PVRL4 Missense_Mutation p.D338V 0.20 tolerated(0.28) benign(0.005) TCGA-95-7039-01 1 161179353 161179353 C T NDUFS2 Missense_Mutation p.P199S 0.66 deleterious(0) probably_damaging(1) TCGA-95-7039-01 1 161693363 161693363 A G FCRLB Missense_Mutation p.T87A 0.23 deleterious(0.03) possibly_damaging(0.832) TCGA-95-7039-01 1 161976182 161976182 C A OLFML2B Missense_Mutation p.G210C 0.23 tolerated(0.15) benign(0.044) TCGA-95-7039-01 1 161976233 161976233 C T OLFML2B Missense_Mutation p.E193K 0.21 tolerated(0.33) benign(0.003) TCGA-95-7039-01 1 16257201 16257201 C G SPEN Missense_Mutation p.P1489R 0.32 probably_damaging(0.999) TCGA-95-7039-01 1 163042650 163042650 C A RGS4 Missense_Mutation p.H166N 0.26 tolerated(0.28) benign(0.031) TCGA-95-7039-01 1 165380219 165380219 T C RXRG Silent p.T250T 0.25 TCGA-95-7039-01 1 165721336 165721336 C A TMCO1 Intron 0.39 TCGA-95-7039-01 1 166818420 166818420 G A POGK Missense_Mutation p.A202T 0.20 tolerated(0.1) probably_damaging(0.993) TCGA-95-7039-01 1 166973514 166973514 A T MAEL Silent p.P207P 0.11 TCGA-95-7039-01 1 166990948 166990948 C T MAEL Silent p.S387S 0.52 TCGA-95-7039-01 1 167097512 167097512 C T DUSP27 Silent p.S1048S 0.19 TCGA-95-7039-01 1 167487721 167487721 A T CD247 5'UTR 0.13 TCGA-95-7039-01 1 16893836 16893836 C T NBPF1 Missense_Mutation p.E893K 0.03 tolerated(0.06) possibly_damaging(0.74) TCGA-95-7039-01 1 169519150 169519150 G A F5 Silent p.C500C 0.43 TCGA-95-7039-01 1 17292337 17292337 G C CROCC Missense_Mutation p.G1509R 0.34 probably_damaging(0.98) TCGA-95-7039-01 1 175097863 175097863 C A TNN Missense_Mutation p.T1104K 0.14 tolerated(0.05) probably_damaging(1) TCGA-95-7039-01 1 175331847 175331847 C T TNR Missense_Mutation p.V936M 0.23 tolerated(0.1) possibly_damaging(0.73) TCGA-95-7039-01 1 175914216 175914216 C T RFWD2 3'UTR 0.18 TCGA-95-7039-01 1 175996778 175996778 C A RFWD2 Missense_Mutation p.E553D 0.31 tolerated(0.68) possibly_damaging(0.585) TCGA-95-7039-01 1 176708847 176708847 C A PAPPA2 Missense_Mutation p.P1295Q 0.26 tolerated(0.2) possibly_damaging(0.815) TCGA-95-7039-01 1 176734887 176734887 G C PAPPA2 Missense_Mutation p.G1413R 0.22 tolerated(0.17) possibly_damaging(0.634) TCGA-95-7039-01 1 176809373 176809373 G C PAPPA2 Missense_Mutation p.G1756A 0.18 deleterious(0) probably_damaging(1) TCGA-95-7039-01 1 176811528 176811528 G T PAPPA2 Missense_Mutation p.A1772S 0.12 tolerated(0.15) possibly_damaging(0.571) TCGA-95-7039-01 1 177133679 177133679 A T ASTN1 Missense_Mutation p.L45Q 0.23 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-95-7039-01 1 177250747 177250747 C A BRINP2 3'UTR 0.44 TCGA-95-7039-01 1 178485794 178485794 T A TEX35 Missense_Mutation p.F87L 0.21 tolerated(0.1) probably_damaging(0.916) TCGA-95-7039-01 1 179870504 179870504 G T TOR1AIP1 Missense_Mutation p.R240S 0.16 tolerated_low_confidence(0.71) benign(0.129) TCGA-95-7039-01 1 18023766 18023766 G T ARHGEF10L Missense_Mutation p.G1244V 0.58 deleterious(0) probably_damaging(1) TCGA-95-7039-01 1 181707532 181707532 G T CACNA1E Silent p.T1194T 0.46 TCGA-95-7039-01 1 183106963 183106963 G T LAMC1 Splice_Site p.X1491_splice 0.50 TCGA-95-7039-01 1 183514116 183514116 G T SMG7 Missense_Mutation p.G634V 0.10 deleterious_low_confidence(0) benign(0.287) TCGA-95-7039-01 1 184764355 184764355 G A FAM129A Missense_Mutation p.S848F 0.11 deleterious_low_confidence(0) possibly_damaging(0.857) TCGA-95-7039-01 1 184764954 184764954 G A FAM129A Silent p.P648P 0.24 TCGA-95-7039-01 1 185153929 185153929 G T SWT1 Missense_Mutation p.R432L 0.11 deleterious(0.02) probably_damaging(0.963) TCGA-95-7039-01 1 185191038 185191038 G T SWT1 Missense_Mutation p.G727C 0.18 deleterious(0.03) possibly_damaging(0.711) TCGA-95-7039-01 1 186059943 186059943 G T HMCN1 Nonsense_Mutation p.G3261* 0.22 TCGA-95-7039-01 1 186340118 186340118 C G TPR Missense_Mutation p.R105P 0.13 benign(0.026) TCGA-95-7039-01 1 186342569 186342569 T A TPR Missense_Mutation p.R60W 0.11 possibly_damaging(0.675) TCGA-95-7039-01 1 192150512 192150512 G T RGS18 Missense_Mutation p.S125I 0.40 tolerated(0.17) benign(0.027) TCGA-95-7039-01 1 196762605 196762605 T A CFHR3 Missense_Mutation p.C319S 0.17 deleterious(0.01) possibly_damaging(0.885) TCGA-95-7039-01 1 19683126 19683126 T C CAPZB Intron 0.09 TCGA-95-7039-01 1 19992779 19992779 G C HTR6 Missense_Mutation p.G178A 0.19 tolerated(0.35) benign(0.043) TCGA-95-7039-01 1 200821748 200821748 C T CAMSAP2 Missense_Mutation p.T1182I 0.15 deleterious(0.01) benign(0.094) TCGA-95-7039-01 1 200971298 200971298 C A KIF21B Missense_Mutation p.A465S 0.42 tolerated(0.14) benign(0.012) TCGA-95-7039-01 1 201046249 201046249 C T CACNA1S Nonsense_Mutation p.W542* 0.35 TCGA-95-7039-01 1 202270015 202270015 A T LGR6 Missense_Mutation p.K275M 0.18 deleterious(0.02) possibly_damaging(0.75) TCGA-95-7039-01 1 204228631 204228631 G A PLEKHA6 Silent p.P254P 0.15 TCGA-95-7039-01 1 205064008 205064008 G A RBBP5 Silent p.P527P 0.19 TCGA-95-7039-01 1 205779592 205779592 G A SLC41A1 5'UTR 0.12 TCGA-95-7039-01 1 20915674 20915674 C T CDA Silent p.L18L 0.15 TCGA-95-7039-01 1 21031213 21031213 G A KIF17 Missense_Mutation p.H284Y 0.13 tolerated(0.06) possibly_damaging(0.885) TCGA-95-7039-01 1 212798530 212798530 C A FAM71A Missense_Mutation p.A104D 0.33 tolerated(0.21) possibly_damaging(0.521) TCGA-95-7039-01 1 214803990 214803990 G C CENPF Missense_Mutation p.Q436H 0.19 probably_damaging(0.98) TCGA-95-7039-01 1 215799109 215799109 T C USH2A 3'UTR 0.20 TCGA-95-7039-01 1 215847454 215847454 T A USH2A Missense_Mutation p.K4600M 0.27 possibly_damaging(0.852) TCGA-95-7039-01 1 215847984 215847984 G T USH2A Silent p.A4423A 0.24 TCGA-95-7039-01 1 216052381 216052381 C A USH2A Missense_Mutation p.M2761I 0.13 possibly_damaging(0.899) TCGA-95-7039-01 1 216462717 216462717 G C USH2A Missense_Mutation p.R626G 0.14 probably_damaging(0.99) TCGA-95-7039-01 1 216495284 216495284 T C USH2A Missense_Mutation p.T529A 0.10 benign(0.159) TCGA-95-7039-01 1 216498711 216498711 G T USH2A Missense_Mutation p.T360K 0.12 benign(0.022) TCGA-95-7039-01 1 216680258 216680258 G A ESRRG 3'UTR 0.19 TCGA-95-7039-01 1 217947784 217947784 G C SPATA17 Missense_Mutation p.D210H 0.15 tolerated(0.56) benign(0.002) TCGA-95-7039-01 1 21928224 21928224 C T RAP1GAP Silent p.E599E 0.11 TCGA-95-7039-01 1 223984286 223984286 C G TP53BP2 Missense_Mutation p.G652A 0.09 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 1 226784531 226784531 G T C1orf95 Silent p.L77L 0.16 TCGA-95-7039-01 1 227348267 227348267 G C CDC42BPA Missense_Mutation p.L224V 0.12 deleterious(0) probably_damaging(0.997) TCGA-95-7039-01 1 228003799 228003799 C A PRSS38 Silent p.R53R 0.22 TCGA-95-7039-01 1 228505766 228505766 G C OBSCN Missense_Mutation p.G5632R 0.21 probably_damaging(0.992) TCGA-95-7039-01 1 22987440 22987440 G T C1QB Missense_Mutation p.G108V 0.25 deleterious(0) probably_damaging(1) TCGA-95-7039-01 1 231488891 231488891 C T SPRTN Silent p.D418D 0.27 TCGA-95-7039-01 1 235972423 235972423 G A LYST Silent p.S565S 0.19 TCGA-95-7039-01 1 23637164 23637164 C A HNRNPR Missense_Mutation p.R565L 0.16 tolerated(0.07) unknown(0) TCGA-95-7039-01 1 237666694 237666694 G A RYR2 Silent p.V834V 0.20 TCGA-95-7039-01 1 237777402 237777402 C A RYR2 Silent p.L1658L 0.17 TCGA-95-7039-01 1 237802473 237802473 T A RYR2 Missense_Mutation p.S2363T 0.12 benign(0.032) TCGA-95-7039-01 1 237837423 237837423 C A RYR2 Missense_Mutation p.P2873H 0.19 probably_damaging(1) TCGA-95-7039-01 1 237870417 237870417 G T RYR2 Missense_Mutation p.W3250L 0.20 benign(0.026) TCGA-95-7039-01 1 238049089 238049089 C A ZP4 Nonsense_Mutation p.G313* 0.24 TCGA-95-7039-01 1 238090683 238090683 G T RP11-193H5.1 RNA 0.46 TCGA-95-7039-01 1 238090699 238090699 C A RP11-193H5.1 RNA 0.13 TCGA-95-7039-01 1 240341258 240341258 C A FMN2 Missense_Mutation p.P607H 0.15 unknown(0) TCGA-95-7039-01 1 240969580 240969580 C G RGS7 Missense_Mutation p.V377L 0.40 tolerated(0.08) probably_damaging(0.983) TCGA-95-7039-01 1 242035553 242035553 C T EXO1 Missense_Mutation p.A496V 0.18 deleterious(0.03) possibly_damaging(0.616) TCGA-95-7039-01 1 245582880 245582880 G T KIF26B Splice_Site p.X334_splice 0.31 TCGA-95-7039-01 1 247024416 247024416 C A AHCTF1 Missense_Mutation p.G1315V 0.22 deleterious(0) benign(0.135) TCGA-95-7039-01 1 247063718 247063718 C A AHCTF1 Nonsense_Mutation p.G400* 0.16 TCGA-95-7039-01 1 247202732 247202732 G T ZNF670 Missense_Mutation p.F37L 0.16 tolerated(0.18) benign(0.078) TCGA-95-7039-01 1 247263971 247263971 C A ZNF669 Missense_Mutation p.C367F 0.23 deleterious(0) probably_damaging(0.998) TCGA-95-7039-01 1 247654475 247654475 G T OR2W5 RNA 0.20 TCGA-95-7039-01 1 247695553 247695553 C T OR2C3 Nonsense_Mutation p.W87* 0.23 TCGA-95-7039-01 1 247769675 247769675 G C OR2G3 Missense_Mutation p.S263T 0.16 tolerated(0.2) benign(0.139) TCGA-95-7039-01 1 248059293 248059293 C A OR2W3 Silent p.I135I 0.26 TCGA-95-7039-01 1 248112346 248112346 A G OR2L8 Missense_Mutation p.S63G 0.09 deleterious(0.01) benign(0.142) TCGA-95-7039-01 1 248112525 248112525 C T OR2L8 Silent p.Y122Y 0.16 TCGA-95-7039-01 1 248224240 248224240 C A OR2L3 Missense_Mutation p.S86Y 0.13 tolerated(0.94) benign(0) TCGA-95-7039-01 1 248263312 248263312 G T OR2L13 Missense_Mutation p.G212V 0.15 tolerated(1) probably_damaging(0.973) TCGA-95-7039-01 1 248308469 248308469 C - OR2M5 Frame_Shift_Del p.F8Sfs*123 0.18 TCGA-95-7039-01 1 248367101 248367101 C A OR2M3 Missense_Mutation p.H244Q 0.17 deleterious(0.02) possibly_damaging(0.859) TCGA-95-7039-01 1 248436766 248436766 G T OR2T33 Silent p.A117A 0.10 TCGA-95-7039-01 1 248436792 248436792 C A OR2T33 Nonsense_Mutation p.E109* 0.20 TCGA-95-7039-01 1 248512964 248512964 G T OR14C36 Missense_Mutation p.K296N 0.11 deleterious(0.02) benign(0.347) TCGA-95-7039-01 1 248551251 248551251 G C OR2T6 Silent p.L114L 0.07 TCGA-95-7039-01 1 248756958 248756958 C A OR2T10 Missense_Mutation p.A38S 0.24 tolerated(0.19) possibly_damaging(0.468) TCGA-95-7039-01 1 248756959 248756959 C A OR2T10 Missense_Mutation p.M37I 0.24 tolerated(0.24) benign(0.005) TCGA-95-7039-01 1 249106309 249106309 G - SH3BP5L Frame_Shift_Del p.G325Afs*9 0.18 TCGA-95-7039-01 1 2494735 2494735 G C TNFRSF14 3'UTR 0.11 TCGA-95-7039-01 1 27677381 27677381 G T SYTL1 Nonsense_Mutation p.E368* 0.21 TCGA-95-7039-01 1 28527766 28527766 C A DNAJC8 Missense_Mutation p.R252L 0.16 deleterious(0) benign(0.14) TCGA-95-7039-01 1 28598184 28598184 G T SESN2 Splice_Site p.X53_splice 0.44 TCGA-95-7039-01 1 31744346 31744346 C A SNRNP40 Missense_Mutation p.V219F 0.12 deleterious(0.01) possibly_damaging(0.815) TCGA-95-7039-01 1 32623006 32623006 G A KPNA6 Silent p.Q97Q 0.23 TCGA-95-7039-01 1 32627617 32627617 A T KPNA6 Silent p.R239R 0.46 TCGA-95-7039-01 1 3328481 3328481 G C PRDM16 Missense_Mutation p.G574R 0.59 tolerated(0.07) possibly_damaging(0.866) TCGA-95-7039-01 1 33478750 33478750 G A AK2 3'UTR 0.59 TCGA-95-7039-01 1 34238303 34238303 C G CSMD2 Silent p.R531R 0.15 TCGA-95-7039-01 1 35365842 35365842 G T DLGAP3 Silent p.T380T 0.05 TCGA-95-7039-01 1 36181870 36181870 G A C1orf216 Missense_Mutation p.P18L 0.29 tolerated(0.38) benign(0.003) TCGA-95-7039-01 1 38095317 38095317 C A RSPO1 Missense_Mutation p.C6F 0.55 tolerated(0.69) benign(0.001) TCGA-95-7039-01 1 38155370 38155370 C A C1orf109 Silent p.P61P 0.23 TCGA-95-7039-01 1 39854322 39854322 G C MACF1 Missense_Mutation p.D3208H 0.13 probably_damaging(0.976) TCGA-95-7039-01 1 39920741 39920741 G A MACF1 Missense_Mutation p.R4957Q 0.18 benign(0.006) TCGA-95-7039-01 1 44280572 44280572 G A ST3GAL3 Missense_Mutation p.R74Q 0.06 tolerated_low_confidence(0.1) benign(0.056) TCGA-95-7039-01 1 44595237 44595237 G T KLF17 Missense_Mutation p.M98I 0.27 tolerated(0.07) benign(0.001) TCGA-95-7039-01 1 47609582 47609582 C A CYP4A22 Missense_Mutation p.H262N 0.11 deleterious(0) benign(0.394) TCGA-95-7039-01 1 52499412 52499412 C T KTI12 Missense_Mutation p.G8R 0.19 deleterious(0) probably_damaging(1) TCGA-95-7039-01 1 52859452 52859452 G A ORC1 Nonsense_Mutation p.Q249* 0.23 TCGA-95-7039-01 1 5927116 5927116 T A NPHP4 Missense_Mutation p.N1178Y 0.45 deleterious(0) probably_damaging(0.978) TCGA-95-7039-01 1 6142306 6142306 G C KCNAB2 Missense_Mutation p.D118H 0.24 deleterious(0.02) probably_damaging(0.996) TCGA-95-7039-01 1 65858405 65858405 G T DNAJC6 Missense_Mutation p.G587V 0.23 tolerated(0.37) benign(0.014) TCGA-95-7039-01 1 66083808 66083808 G C LEPR Missense_Mutation p.V792L 0.22 tolerated(0.29) benign(0.014) TCGA-95-7039-01 1 67724433 67724434 - A IL23R Frame_Shift_Ins p.T505Nfs*6 0.23 TCGA-95-7039-01 1 70478690 70478690 C A LRRC7 Missense_Mutation p.L352I 0.31 deleterious(0) probably_damaging(0.99) TCGA-95-7039-01 1 75037774 75037774 C A C1orf173 Missense_Mutation p.G1207V 0.07 deleterious(0) benign(0.372) TCGA-95-7039-01 1 75037803 75037803 G T C1orf173 Silent p.S1197S 0.29 TCGA-95-7039-01 1 79116312 79116312 G T IFI44 Missense_Mutation p.Q144H 0.24 tolerated(0.45) probably_damaging(0.979) TCGA-95-7039-01 1 79383622 79383622 G T ELTD1 Missense_Mutation p.N525K 0.49 deleterious(0.01) probably_damaging(1) TCGA-95-7039-01 1 9098496 9098496 C A SLC2A5 Missense_Mutation p.G390W 0.32 deleterious(0) probably_damaging(1) TCGA-95-7039-01 1 9129637 9129637 C A SLC2A5 5'UTR 0.11 TCGA-95-7039-01 1 97564188 97564188 T G DPYD Missense_Mutation p.K875Q 0.38 tolerated(0.41) benign(0.029) TCGA-95-7039-01 1 982115 982115 G T AGRN Missense_Mutation p.G1084W 0.50 deleterious(0) possibly_damaging(0.893) TCGA-95-7039-01 1 99418878 99418878 T A LPPR5 Splice_Site p.X124_splice 0.39 TCGA-95-7039-01 1 99771526 99771526 C A LPPR4 Missense_Mutation p.P418T 0.34 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 1 99771527 99771527 C A LPPR4 Missense_Mutation p.P418Q 0.34 deleterious(0) probably_damaging(1) TCGA-95-7039-01 20 1961312 1961312 G T PDYN Missense_Mutation p.A141E 0.25 tolerated(1) benign(0.007) TCGA-95-7039-01 20 2083825 2083825 G A STK35 Missense_Mutation p.D236N 0.38 tolerated(0.17) benign(0.058) TCGA-95-7039-01 20 23016573 23016573 T A SSTR4 Silent p.P151P 0.24 TCGA-95-7039-01 20 23433353 23433353 T A CST11 Silent p.L32L 0.24 TCGA-95-7039-01 20 24524197 24524197 A G SYNDIG1 Missense_Mutation p.E155G 0.12 tolerated(0.39) benign(0.001) TCGA-95-7039-01 20 24646227 24646227 C G SYNDIG1 3'UTR 0.21 TCGA-95-7039-01 20 25596977 25596977 C A NANP Missense_Mutation p.A111S 0.13 tolerated(0.81) benign(0.031) TCGA-95-7039-01 20 2846072 2846072 G T VPS16 Silent p.L734L 0.17 TCGA-95-7039-01 20 30028493 30028493 G T DEFB123 5'UTR 0.27 TCGA-95-7039-01 20 30064471 30064471 G T REM1 Missense_Mutation p.G75C 0.33 tolerated(0.06) benign(0.005) TCGA-95-7039-01 20 30064472 30064472 G T REM1 Missense_Mutation p.G75V 0.36 tolerated(0.16) benign(0.04) TCGA-95-7039-01 20 30409403 30409403 C A MYLK2 Missense_Mutation p.P212Q 0.20 tolerated(0.08) benign(0.006) TCGA-95-7039-01 20 30785203 30785203 C T PLAGL2 Silent p.R181R 0.28 TCGA-95-7039-01 20 31583529 31583529 A T SUN5 Missense_Mutation p.Y144N 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-95-7039-01 20 32302524 32302524 C A PXMP4 Silent p.R44R 0.14 TCGA-95-7039-01 20 3299041 3299041 T A C20orf194 Missense_Mutation p.M455L 0.33 tolerated(0.52) probably_damaging(0.988) TCGA-95-7039-01 20 33509666 33509666 T C ACSS2 Silent p.Y528Y 0.15 TCGA-95-7039-01 20 34809839 34809840 - G EPB41L1 Frame_Shift_Ins p.D833Gfs*2 0.32 TCGA-95-7039-01 20 35812692 35812692 G T RPN2 Silent p.L41L 0.29 TCGA-95-7039-01 20 36026134 36026134 A T SRC Missense_Mutation p.T246S 0.33 tolerated(0.69) benign(0) TCGA-95-7039-01 20 36611785 36611785 C A TTI1 3'UTR 0.22 TCGA-95-7039-01 20 3687105 3687105 G T SIGLEC1 Missense_Mutation p.L100M 0.20 deleterious(0) probably_damaging(0.998) TCGA-95-7039-01 20 36974972 36974972 C A LBP Missense_Mutation p.T18K 0.23 tolerated(0.4) unknown(0) TCGA-95-7039-01 20 39728849 39728849 A G TOP1 Missense_Mutation p.I377V 0.23 tolerated(0.76) benign(0.075) TCGA-95-7039-01 20 40979359 40979359 G T PTPRT Missense_Mutation p.P592T 0.35 tolerated(0.06) benign(0.002) TCGA-95-7039-01 20 42788499 42788499 T C JPH2 Missense_Mutation p.S310G 0.15 tolerated(0.07) probably_damaging(0.998) TCGA-95-7039-01 20 44507303 44507303 A C ZSWIM3 3'UTR 0.11 TCGA-95-7039-01 20 47585760 47585760 G A ARFGEF2 Missense_Mutation p.R379H 0.24 deleterious(0) probably_damaging(0.995) TCGA-95-7039-01 20 51871691 51871691 T C TSHZ2 Missense_Mutation p.L565P 0.16 tolerated(0.1) probably_damaging(0.945) TCGA-95-7039-01 20 52645453 52645453 C A BCAS1 Silent p.T67T 0.17 TCGA-95-7039-01 20 57769659 57769659 C A ZNF831 Silent p.P1195P 0.28 TCGA-95-7039-01 20 61991028 61991028 C A CHRNA4 Missense_Mutation p.A34S 0.09 tolerated(0.57) possibly_damaging(0.493) TCGA-95-7039-01 20 62571609 62571609 T A UCKL1 Silent p.A487A 0.25 TCGA-95-7039-01 20 9498814 9498814 G A LAMP5 Missense_Mutation p.M201I 0.17 tolerated(0.11) benign(0.006) TCGA-95-7039-01 20 9546846 9546846 C A PAK7 Silent p.S392S 0.24 TCGA-95-7039-01 21 10910354 10910354 C A TPTE Missense_Mutation p.D468Y 0.18 deleterious(0) possibly_damaging(0.777) TCGA-95-7039-01 21 15481210 15481210 A T LIPI 3'UTR 0.30 TCGA-95-7039-01 21 15591968 15591968 G T RBM11 Nonsense_Mutation p.E61* 0.25 TCGA-95-7039-01 21 19687566 19687566 G A TMPRSS15 Silent p.C643C 0.18 TCGA-95-7039-01 21 28338566 28338566 C T ADAMTS5 Missense_Mutation p.E49K 0.19 deleterious_low_confidence(0.03) benign(0.017) TCGA-95-7039-01 21 30953808 30953808 C T GRIK1 Missense_Mutation p.V617M 0.27 tolerated(0.06) probably_damaging(0.969) TCGA-95-7039-01 21 31045395 31045395 C A GRIK1 Missense_Mutation p.A212S 0.43 tolerated(0.38) possibly_damaging(0.613) TCGA-95-7039-01 21 31720917 31720917 T C KRTAP23-1 Missense_Mutation p.Y3C 0.17 deleterious_low_confidence(0.02) unknown(0) TCGA-95-7039-01 21 31852438 31852438 C A KRTAP19-1 Missense_Mutation p.G67C 0.24 deleterious_low_confidence(0.02) unknown(0) TCGA-95-7039-01 21 32492846 32492846 C G TIAM1 Missense_Mutation p.G1539A 0.23 tolerated(0.26) benign(0) TCGA-95-7039-01 21 35166694 35166694 T C ITSN1 Missense_Mutation p.M625T 0.25 tolerated(0.24) benign(0.009) TCGA-95-7039-01 21 35254742 35254742 T A ITSN1 Missense_Mutation p.Y1513N 0.18 deleterious(0) probably_damaging(0.969) TCGA-95-7039-01 21 35821760 35821760 G A KCNE1 Missense_Mutation p.T58I 0.26 deleterious(0) probably_damaging(0.995) TCGA-95-7039-01 21 35890403 35890403 G A RCAN1 Silent p.Y246Y 0.22 TCGA-95-7039-01 21 37741461 37741461 G T MORC3 Nonsense_Mutation p.E599* 0.37 TCGA-95-7039-01 21 38593547 38593547 G A DSCR3 3'Flank 0.18 TCGA-95-7039-01 21 40194635 40194635 A C ETS2 Missense_Mutation p.K411T 0.19 deleterious(0) probably_damaging(0.987) TCGA-95-7039-01 21 41300977 41300977 G A PCP4 Missense_Mutation p.V44M 0.09 deleterious(0) probably_damaging(0.972) TCGA-95-7039-01 21 41539148 41539148 C A DSCAM Missense_Mutation p.W1005C 0.15 deleterious(0) probably_damaging(0.993) TCGA-95-7039-01 21 42748938 42748938 A G MX2 Silent p.P35P 0.18 TCGA-95-7039-01 21 43236155 43236155 C A PRDM15 Missense_Mutation p.K1132N 0.22 deleterious(0.04) probably_damaging(0.992) TCGA-95-7039-01 21 43412040 43412040 T C ZBTB21 Missense_Mutation p.Y722C 0.23 deleterious(0.01) possibly_damaging(0.759) TCGA-95-7039-01 21 44323960 44323960 G T NDUFV3 Nonsense_Mutation p.E280* 0.22 TCGA-95-7039-01 21 45709916 45709916 C A AIRE Missense_Mutation p.P282T 0.43 tolerated(0.29) benign(0.15) TCGA-95-7039-01 21 46021053 46021053 T A KRTAP10-7 Missense_Mutation p.C178S 0.32 deleterious(0.03) unknown(0) TCGA-95-7039-01 21 47738140 47738140 G A C21orf58 Intron 0.35 TCGA-95-7039-01 22 17073318 17073318 C T CCT8L2 Silent p.Q41Q 0.20 TCGA-95-7039-01 22 17630584 17630584 C T CECR5 Missense_Mutation p.G60S 0.26 deleterious(0) probably_damaging(0.946) TCGA-95-7039-01 22 18070036 18070036 C T SLC25A18 Missense_Mutation p.L182F 0.22 deleterious(0.01) probably_damaging(0.971) TCGA-95-7039-01 22 23063423 23063423 G A IGLV3-19 Missense_Mutation p.D44N 0.14 tolerated(0.46) benign(0.017) TCGA-95-7039-01 22 23523546 23523546 G T BCR Missense_Mutation p.R133S 0.25 tolerated_low_confidence(0.25) benign(0.005) TCGA-95-7039-01 22 26701995 26701995 C A SEZ6L Missense_Mutation p.P467T 0.19 deleterious(0) probably_damaging(1) TCGA-95-7039-01 22 31668610 31668610 G A LIMK2 Missense_Mutation p.R472H 0.12 deleterious(0.02) probably_damaging(0.93) TCGA-95-7039-01 22 41077634 41077634 C - MCHR1 Frame_Shift_Del p.R325Afs*22 0.19 TCGA-95-7039-01 22 44692601 44692601 C G KIAA1644 Missense_Mutation p.A78P 0.28 deleterious(0.02) probably_damaging(0.996) TCGA-95-7039-01 22 50894717 50894717 T A SBF1 Silent p.P1398P 0.25 TCGA-95-7039-01 2 101609882 101609882 G T NPAS2 Missense_Mutation p.V729F 0.47 deleterious(0) benign(0.346) TCGA-95-7039-01 2 102956659 102956659 C A IL1RL1 Nonsense_Mutation p.S125* 0.14 TCGA-95-7039-01 2 102965695 102965695 T A IL1RL1 Missense_Mutation p.L425Q 0.47 deleterious(0.01) probably_damaging(0.949) TCGA-95-7039-01 2 107423348 107423348 G T ST6GAL2 Missense_Mutation p.S459Y 0.45 probably_damaging(1) TCGA-95-7039-01 2 118579481 118579481 G T DDX18 Missense_Mutation p.M265I 0.17 tolerated(0.19) benign(0.037) TCGA-95-7039-01 2 122122783 122122783 T C CLASP1 Missense_Mutation p.K1322E 0.24 deleterious(0) benign(0.407) TCGA-95-7039-01 2 125521572 125521572 T A CNTNAP5 Missense_Mutation p.V793D 0.39 deleterious(0) possibly_damaging(0.544) TCGA-95-7039-01 2 125530416 125530420 TCCTG GCCTGT CNTNAP5 Frame_Shift_Ins p.E860Gfs*12 0.21 TCGA-95-7039-01 2 127453522 127453522 G T GYPC Missense_Mutation p.G64V 0.09 deleterious(0.01) possibly_damaging(0.865) TCGA-95-7039-01 2 127957001 127957001 T C CYP27C1 Missense_Mutation p.Q168R 0.36 tolerated(0.17) benign(0.049) TCGA-95-7039-01 2 128331623 128331623 C T MYO7B Missense_Mutation p.R241W 0.20 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 2 128335809 128335809 C A MYO7B Missense_Mutation p.D317E 0.15 tolerated(1) probably_damaging(0.996) TCGA-95-7039-01 2 128408417 128408417 C A GPR17 Silent p.S64S 0.26 TCGA-95-7039-01 2 135744697 135744697 G T MAP3K19 Missense_Mutation p.P582H 0.17 tolerated(0.17) benign(0.016) TCGA-95-7039-01 2 136624258 136624258 C A MCM6 Missense_Mutation p.S219I 0.07 deleterious(0) possibly_damaging(0.835) TCGA-95-7039-01 2 141108558 141108558 A T LRP1B Silent p.G3900G 0.11 TCGA-95-7039-01 2 141459833 141459833 C A LRP1B Missense_Mutation p.R2060L 0.14 benign(0.25) TCGA-95-7039-01 2 141707882 141707882 G A LRP1B Missense_Mutation p.P1020S 0.30 probably_damaging(0.982) TCGA-95-7039-01 2 143973977 143973978 - A ARHGAP15 Frame_Shift_Ins p.A89Sfs*2 0.16 TCGA-95-7039-01 2 144966327 144966327 C A GTDC1 Missense_Mutation p.A8S 0.24 tolerated(0.15) possibly_damaging(0.842) TCGA-95-7039-01 2 145187395 145187395 C - ZEB2 Frame_Shift_Del p.G91Vfs*17 0.11 TCGA-95-7039-01 2 149522656 149522656 A C EPC2 Missense_Mutation p.N361H 0.10 deleterious(0) benign(0.024) TCGA-95-7039-01 2 149847596 149847596 G T KIF5C Nonsense_Mutation p.E597* 0.43 TCGA-95-7039-01 2 152348631 152348631 T A NEB Missense_Mutation p.Q8346H 0.07 benign(0.096) TCGA-95-7039-01 2 152422283 152422283 G C NEB Missense_Mutation p.L6070V 0.47 possibly_damaging(0.882) TCGA-95-7039-01 2 152507197 152507197 T A NEB Missense_Mutation p.Q2373L 0.09 probably_damaging(0.997) TCGA-95-7039-01 2 152684741 152684741 C A ARL5A 5'UTR 0.29 TCGA-95-7039-01 2 160884857 160884857 G T PLA2R1 Missense_Mutation p.P324Q 0.07 deleterious(0.01) probably_damaging(0.925) TCGA-95-7039-01 2 165353989 165353989 T C GRB14 Silent p.S372S 0.13 TCGA-95-7039-01 2 166026976 166026976 G A SCN3A Missense_Mutation p.P116L 0.10 tolerated(0.65) benign(0.344) TCGA-95-7039-01 2 166245987 166245987 G A SCN2A Missense_Mutation p.V1891I 0.17 tolerated(0.33) benign(0.043) TCGA-95-7039-01 2 166533059 166533059 T A CSRNP3 Missense_Mutation p.C216S 0.10 deleterious(0) probably_damaging(0.99) TCGA-95-7039-01 2 1667450 1667451 - C PXDN Frame_Shift_Ins p.Q499Pfs*78 0.09 TCGA-95-7039-01 2 168099387 168099387 G A XIRP2 Silent p.L495L 0.17 TCGA-95-7039-01 2 168100659 168100659 A C XIRP2 Missense_Mutation p.Q919H 0.08 benign(0.275) TCGA-95-7039-01 2 168102600 168102601 GG T XIRP2 Frame_Shift_Del p.Q1566Hfs*12 0.22 TCGA-95-7039-01 2 168107039 168107039 C A XIRP2 Missense_Mutation p.P3046H 0.17 benign(0.015) TCGA-95-7039-01 2 168107258 168107258 C A XIRP2 Missense_Mutation p.P3119Q 0.48 benign(0.299) TCGA-95-7039-01 2 168114542 168114542 A T XIRP2 3'UTR 0.15 TCGA-95-7039-01 2 170063602 170063602 C T LRP2 Missense_Mutation p.G2210R 0.12 probably_damaging(1) TCGA-95-7039-01 2 170493265 170493265 A G PPIG Silent p.E499E 0.12 TCGA-95-7039-01 2 170502615 170502615 A T CCDC173 Silent p.A465A 0.14 TCGA-95-7039-01 2 173354257 173354257 C A ITGA6 Silent p.T850T 0.17 TCGA-95-7039-01 2 175436472 175436472 G C WIPF1 Nonsense_Mutation p.S354* 0.18 TCGA-95-7039-01 2 175612944 175612944 G A CHRNA1 Missense_Mutation p.H453Y 0.19 deleterious(0) probably_damaging(0.992) TCGA-95-7039-01 2 176988789 176988789 C T HOXD9 Silent p.R315R 0.23 TCGA-95-7039-01 2 178081299 178081299 C T HNRNPA3 Nonsense_Mutation p.Q208* 0.06 TCGA-95-7039-01 2 178310322 178310322 G T AGPS Missense_Mutation p.A280S 0.10 tolerated(0.16) possibly_damaging(0.458) TCGA-95-7039-01 2 179417574 179417574 G T TTN Missense_Mutation p.P30018H 0.16 TCGA-95-7039-01 2 179436920 179436920 G A TTN Nonsense_Mutation p.R24647* 0.06 TCGA-95-7039-01 2 179439522 179439522 G C TTN Silent p.T23779T 0.11 TCGA-95-7039-01 2 179441663 179441663 C A TTN Missense_Mutation p.M23133I 0.11 TCGA-95-7039-01 2 179449937 179449937 G T TTN Missense_Mutation p.H21512N 0.48 TCGA-95-7039-01 2 179453306 179453306 G T TTN Missense_Mutation p.P21049Q 0.12 TCGA-95-7039-01 2 179464352 179464352 G C TTN Missense_Mutation p.T18759S 0.06 TCGA-95-7039-01 2 179468686 179468686 T A TTN Missense_Mutation p.Q18243L 0.14 TCGA-95-7039-01 2 179474428 179474428 T A TTN Missense_Mutation p.K17241I 0.10 TCGA-95-7039-01 2 179482673 179482673 G T TTN Missense_Mutation p.S15802Y 0.43 TCGA-95-7039-01 2 179486621 179486621 C G TTN Missense_Mutation p.E15010Q 0.14 TCGA-95-7039-01 2 179499928 179499928 T C TTN Silent p.Q13996Q 0.08 TCGA-95-7039-01 2 179500696 179500696 C A TTN Missense_Mutation p.V13868L 0.09 TCGA-95-7039-01 2 179501527 179501527 C T TTN Splice_Site p.X13643_splice 0.10 TCGA-95-7039-01 2 179592456 179592456 C A TTN Missense_Mutation p.G6617C 0.20 TCGA-95-7039-01 2 179659182 179659182 G T TTN Missense_Mutation p.Q448K 0.17 TCGA-95-7039-01 2 179714841 179714841 T A CCDC141 Nonsense_Mutation p.K1098* 0.28 TCGA-95-7039-01 2 17998011 17998011 A C MSGN1 Missense_Mutation p.S76R 0.33 tolerated(0.39) benign(0.015) TCGA-95-7039-01 2 1805558 1805558 A G MYT1L Silent p.D1060D 0.15 TCGA-95-7039-01 2 182322569 182322569 C T ITGA4 Missense_Mutation p.A63V 0.22 tolerated(0.25) benign(0.001) TCGA-95-7039-01 2 184024234 184024234 G A NUP35 Missense_Mutation p.D253N 0.29 tolerated(0.07) benign(0.005) TCGA-95-7039-01 2 185803074 185803074 T C ZNF804A Missense_Mutation p.M984T 0.30 tolerated(0.12) benign(0.012) TCGA-95-7039-01 2 185803881 185803881 T G ZNF804A 3'UTR 0.38 TCGA-95-7039-01 2 186673154 186673154 C A FSIP2 Nonsense_Mutation p.S6463* 0.21 TCGA-95-7039-01 2 187615934 187615934 G C FAM171B Missense_Mutation p.K266N 0.12 tolerated(0.42) benign(0.014) TCGA-95-7039-01 2 1891331 1891331 G A MYT1L Silent p.P855P 0.52 TCGA-95-7039-01 2 190334125 190334125 G A WDR75 Silent p.E593E 0.24 TCGA-95-7039-01 2 190535324 190535324 C G ASNSD1 Missense_Mutation p.R602G 0.07 deleterious(0) probably_damaging(0.98) TCGA-95-7039-01 2 192701246 192701246 C A SDPR Missense_Mutation p.R227S 0.32 deleterious(0) probably_damaging(0.968) TCGA-95-7039-01 2 197183691 197183691 A T HECW2 Silent p.A641A 0.17 TCGA-95-7039-01 2 197705997 197705997 G A PGAP1 Silent p.F910F 0.08 TCGA-95-7039-01 2 202149719 202149719 G T CASP8 Missense_Mutation p.G387V 0.30 deleterious(0) probably_damaging(1) TCGA-95-7039-01 2 207516519 207516519 G C DYTN 3'UTR 0.21 TCGA-95-7039-01 2 209195317 209195317 G T PIKFYVE Missense_Mutation p.G1288C 0.15 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 2 209302551 209302551 G A PTH2R Nonsense_Mutation p.W119* 0.28 TCGA-95-7039-01 2 21225603 21225603 C A APOB Missense_Mutation p.V4231L 0.07 benign(0.001) TCGA-95-7039-01 2 21227239 21227239 T G APOB Missense_Mutation p.I3997L 0.53 benign(0) TCGA-95-7039-01 2 21228567 21228567 C A APOB Missense_Mutation p.V3725F 0.08 possibly_damaging(0.61) TCGA-95-7039-01 2 21234458 21234458 C A APOB Missense_Mutation p.G1761V 0.52 probably_damaging(0.999) TCGA-95-7039-01 2 21249662 21249662 G T APOB Missense_Mutation p.Q748K 0.07 probably_damaging(0.987) TCGA-95-7039-01 2 215838689 215838689 C T ABCA12 Missense_Mutation p.C1849Y 0.31 deleterious(0) probably_damaging(1) TCGA-95-7039-01 2 219130619 219130619 C T AAMP Missense_Mutation p.G272S 0.19 deleterious(0.01) probably_damaging(0.978) TCGA-95-7039-01 2 219900384 219900385 GG T CCDC108 Frame_Shift_Del p.P120Qfs*18 0.29 TCGA-95-7039-01 2 219920022 219920022 C A IHH Silent p.V381V 0.42 TCGA-95-7039-01 2 220353835 220353835 C A SPEG Missense_Mutation p.H2737N 0.21 benign(0.05) TCGA-95-7039-01 2 220399896 220399896 C G ASIC4 Missense_Mutation p.S468C 0.29 tolerated(0.16) probably_damaging(0.912) TCGA-95-7039-01 2 220439701 220439701 C G INHA Missense_Mutation p.A185G 0.24 tolerated(0.06) possibly_damaging(0.52) TCGA-95-7039-01 2 222301814 222301814 G T EPHA4 Nonsense_Mutation p.Y701* 0.18 TCGA-95-7039-01 2 224749362 224749362 C A WDFY1 Intron 0.22 TCGA-95-7039-01 2 227886798 227886798 C T COL4A4 Missense_Mutation p.M1394I 0.22 unknown(0) TCGA-95-7039-01 2 228881338 228881338 G C SPHKAP Missense_Mutation p.P1411R 0.14 tolerated(0.39) benign(0) TCGA-95-7039-01 2 234879034 234879034 G T TRPM8 Silent p.S773S 0.15 TCGA-95-7039-01 2 237489920 237489920 C T ACKR3 Missense_Mutation p.A271V 0.16 tolerated(1) benign(0.004) TCGA-95-7039-01 2 238277749 238277749 C A COL6A3 Missense_Mutation p.A1453S 0.52 probably_damaging(0.977) TCGA-95-7039-01 2 239161571 239161571 C T PER2 Silent p.Q1031Q 0.08 TCGA-95-7039-01 2 26691303 26691303 C T OTOF Missense_Mutation p.E1355K 0.15 tolerated(0.38) benign(0.144) TCGA-95-7039-01 2 27360302 27360302 C A C2orf53 Missense_Mutation p.G299V 0.22 deleterious(0) probably_damaging(0.98) TCGA-95-7039-01 2 27373134 27373134 C A TCF23 Silent p.A122A 0.15 TCGA-95-7039-01 2 32361981 32361981 G T SPAST Missense_Mutation p.G453W 0.29 deleterious(0) probably_damaging(1) TCGA-95-7039-01 2 37304053 37304053 C A HEATR5B Splice_Site p.X149_splice 0.71 TCGA-95-7039-01 2 38301699 38301699 C A CYP1B1 Missense_Mutation p.R278M 0.16 deleterious(0.01) possibly_damaging(0.619) TCGA-95-7039-01 2 48687233 48687233 G T PPP1R21 Splice_Site p.X181_splice 0.40 TCGA-95-7039-01 2 49216144 49216144 C A FSHR Missense_Mutation p.V166L 0.44 tolerated(0.75) benign(0) TCGA-95-7039-01 2 50724570 50724571 - T NRXN1 Frame_Shift_Ins p.M967Nfs*19 0.24 TCGA-95-7039-01 2 50850623 50850623 C A NRXN1 Missense_Mutation p.M354I 0.35 tolerated(0.4) benign(0.153) TCGA-95-7039-01 2 54859864 54859864 C G SPTBN1 Missense_Mutation p.N1242K 0.45 tolerated(0.26) benign(0.102) TCGA-95-7039-01 2 54874368 54874368 G A SPTBN1 Missense_Mutation p.R1656Q 0.09 tolerated(0.65) benign(0.061) TCGA-95-7039-01 2 58431271 58431271 C T FANCL Silent p.K155K 0.17 TCGA-95-7039-01 2 80530833 80530833 C A LRRTM1 Missense_Mutation p.G38W 0.53 deleterious(0.02) possibly_damaging(0.908) TCGA-95-7039-01 2 84517949 84517949 G A FUNDC2P2 RNA 0.27 TCGA-95-7039-01 2 85818874 85818874 G C VAMP5 Missense_Mutation p.Q10H 0.08 deleterious(0) probably_damaging(0.998) TCGA-95-7039-01 2 8823008 8823008 C G ID2 Missense_Mutation p.D128E 0.15 tolerated(0.13) benign(0.004) TCGA-95-7039-01 2 89399349 89399349 G T IGKV1-16 3'Flank 0.38 TCGA-95-7039-01 2 90199071 90199071 A T IGKV1D-12 Missense_Mutation p.S78C 0.05 deleterious(0) benign(0.245) TCGA-95-7039-01 3 101384009 101384009 C A ZBTB11 Missense_Mutation p.R474S 0.25 tolerated(0.41) benign(0.001) TCGA-95-7039-01 3 101384010 101384010 C A ZBTB11 Missense_Mutation p.R474M 0.25 tolerated(0.09) benign(0.002) TCGA-95-7039-01 3 112648206 112648206 C A CD200R1 Missense_Mutation p.E117D 0.19 deleterious(0.01) benign(0.265) TCGA-95-7039-01 3 113188063 113188063 C A SPICE1 Nonsense_Mutation p.E212* 0.27 TCGA-95-7039-01 3 113955509 113955509 C A ZNF80 Missense_Mutation p.C138F 0.29 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 3 118621313 118621313 C A IGSF11 3'UTR 0.27 TCGA-95-7039-01 3 119445164 119445164 G T MAATS1 Nonsense_Mutation p.E277* 0.30 TCGA-95-7039-01 3 120871405 120871405 G A STXBP5L Missense_Mutation p.E251K 0.19 deleterious(0.05) possibly_damaging(0.868) TCGA-95-7039-01 3 121187155 121187155 C A POLQ Missense_Mutation p.G2281V 0.24 tolerated(0.18) benign(0.007) TCGA-95-7039-01 3 121212454 121212454 C G POLQ Missense_Mutation p.R798P 0.53 deleterious(0) probably_damaging(0.95) TCGA-95-7039-01 3 122641169 122641170 - T SEMA5B Frame_Shift_Ins p.D521Gfs*16 0.31 TCGA-95-7039-01 3 122928212 122928212 A T SEC22A Nonsense_Mutation p.R50* 0.48 TCGA-95-7039-01 3 123665764 123665764 C A CCDC14 Missense_Mutation p.D370Y 0.28 deleterious(0) probably_damaging(0.979) TCGA-95-7039-01 3 126135295 126135295 C A CCDC37 Missense_Mutation p.A121D 0.15 tolerated(0.29) possibly_damaging(0.489) TCGA-95-7039-01 3 12950017 12950017 C G IQSEC1 Missense_Mutation p.E877Q 0.39 deleterious(0.01) possibly_damaging(0.702) TCGA-95-7039-01 3 133467322 133467322 A T TF Missense_Mutation p.K37M 0.37 deleterious(0) probably_damaging(1) TCGA-95-7039-01 3 133664069 133664069 C G SLCO2A1 Missense_Mutation p.C444S 0.15 deleterious(0.02) possibly_damaging(0.686) TCGA-95-7039-01 3 134968220 134968220 G T EPHB1 Silent p.T911T 0.57 TCGA-95-7039-01 3 137786534 137786534 G T DZIP1L Missense_Mutation p.P614Q 0.22 deleterious(0.03) probably_damaging(1) TCGA-95-7039-01 3 140282886 140282886 C A CLSTN2 Silent p.R856R 0.32 TCGA-95-7039-01 3 141304930 141304930 C T RASA2 Silent p.L606L 0.47 TCGA-95-7039-01 3 147120515 147120515 T A ZIC4 Missense_Mutation p.S74C 0.32 deleterious_low_confidence(0) benign(0.436) TCGA-95-7039-01 3 147131292 147131292 C A ZIC1 Missense_Mutation p.A433D 0.16 tolerated(0.25) benign(0.001) TCGA-95-7039-01 3 14770100 14770100 A - C3orf20 Frame_Shift_Del p.I616Lfs*5 0.15 TCGA-95-7039-01 3 150403781 150403781 G A FAM194A Missense_Mutation p.S213L 0.27 tolerated(0.14) benign(0.002) TCGA-95-7039-01 3 164724632 164724632 C A SI Nonsense_Mutation p.G1460* 0.17 TCGA-95-7039-01 3 164764657 164764657 A T SI Missense_Mutation p.L620Q 0.22 deleterious(0) probably_damaging(0.982) TCGA-95-7039-01 3 166958490 166958490 C A ZBBX 3'UTR 0.44 TCGA-95-7039-01 3 167245610 167245610 G A WDR49 Nonsense_Mutation p.Q516* 0.25 TCGA-95-7039-01 3 170587948 170587948 C A RPL22L1 Silent p.P3P 0.14 TCGA-95-7039-01 3 170912349 170912349 C G TNIK Missense_Mutation p.E128Q 0.06 deleterious(0.03) unknown(0) TCGA-95-7039-01 3 176765161 176765161 T A TBL1XR1 Missense_Mutation p.Q264L 0.36 deleterious(0.01) possibly_damaging(0.83) TCGA-95-7039-01 3 178947861 178947861 A T PIK3CA Silent p.G912G 0.09 TCGA-95-7039-01 3 187447539 187447539 C A BCL6 Missense_Mutation p.M218I 0.22 tolerated(0.42) benign(0.004) TCGA-95-7039-01 3 189455623 189455623 G C TP63 Missense_Mutation p.E53Q 0.21 tolerated(0.1) benign(0.034) TCGA-95-7039-01 3 191179241 191179241 C A PYDC2 Missense_Mutation p.P97H 0.21 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-95-7039-01 3 19389399 19389399 G C KCNH8 Silent p.L251L 0.27 TCGA-95-7039-01 3 19559492 19559492 C G KCNH8 Missense_Mutation p.P849A 0.30 tolerated(0.24) benign(0) TCGA-95-7039-01 3 19575573 19575573 C A KCNH8 Missense_Mutation p.N1102K 0.47 tolerated_low_confidence(0.18) benign(0) TCGA-95-7039-01 3 32933404 32933404 A T TRIM71 3'UTR 0.47 TCGA-95-7039-01 3 33419616 33419616 A C FBXL2 Missense_Mutation p.M291L 0.41 tolerated(0.4) benign(0.047) TCGA-95-7039-01 3 36896947 36896947 C G TRANK1 Silent p.S1378S 0.34 TCGA-95-7039-01 3 36899193 36899193 C A TRANK1 Missense_Mutation p.G630C 0.30 tolerated(0.13) benign(0.043) TCGA-95-7039-01 3 38404451 38404451 G C XYLB Missense_Mutation p.K78N 0.29 deleterious(0.01) benign(0.045) TCGA-95-7039-01 3 38888539 38888539 C A SCN11A Missense_Mutation p.M1674I 0.19 tolerated(0.19) benign(0.034) TCGA-95-7039-01 3 42906417 42906417 C A ACKR2 Missense_Mutation p.D141E 0.19 deleterious(0) possibly_damaging(0.901) TCGA-95-7039-01 3 47281438 47281438 G T KIF9 Intron 0.21 TCGA-95-7039-01 3 47382105 47382105 G - KLHL18 Frame_Shift_Del p.G390Afs*24 0.17 TCGA-95-7039-01 3 48643287 48643287 C T UQCRC1 Silent p.V71V 0.24 TCGA-95-7039-01 3 48717147 48717147 C A NCKIPSD Splice_Site p.X451_splice 0.31 TCGA-95-7039-01 3 49163401 49163401 C T LAMB2 Silent p.L781L 0.23 TCGA-95-7039-01 3 49690234 49690234 G A BSN Missense_Mutation p.R1082Q 0.11 unknown(0) TCGA-95-7039-01 3 51399971 51399971 A T DOCK3 Missense_Mutation p.N1720I 0.33 tolerated_low_confidence(0.12) benign(0.006) TCGA-95-7039-01 3 51458159 51458159 C A VPRBP Silent p.R326R 0.23 TCGA-95-7039-01 3 51746995 51746995 G T GRM2 Silent p.L319L 0.26 TCGA-95-7039-01 3 51981799 51981799 C G PARP3 Missense_Mutation p.F447L 0.27 deleterious(0.03) probably_damaging(1) TCGA-95-7039-01 3 52412653 52412653 C T DNAH1 Missense_Mutation p.L2412F 0.23 benign(0.346) TCGA-95-7039-01 3 73016750 73016750 G T GXYLT2 Missense_Mutation p.M343I 0.16 tolerated(0.41) probably_damaging(0.99) TCGA-95-7039-01 3 79638972 79638972 A T ROBO1 Splice_Site p.X30_splice 0.32 TCGA-95-7039-01 3 87017913 87017913 A T VGLL3 Missense_Mutation p.L255Q 0.41 deleterious(0) probably_damaging(0.99) TCGA-95-7039-01 3 93646175 93646175 C A PROS1 Missense_Mutation p.Q51H 0.32 deleterious(0) possibly_damaging(0.726) TCGA-95-7039-01 3 97983944 97983944 C A OR5H6 Silent p.T272T 0.17 TCGA-95-7039-01 3 9832953 9832953 G C TADA3 Silent p.A66A 0.24 TCGA-95-7039-01 3 9911574 9911574 G A CIDEC Silent p.R192R 0.20 TCGA-95-7039-01 4 100208112 100208112 G T ADH1A Missense_Mutation p.H52N 0.31 tolerated(0.08) benign(0.173) TCGA-95-7039-01 4 100237443 100237443 C A ADH1B Silent p.P92P 0.29 TCGA-95-7039-01 4 101439082 101439082 G T EMCN 5'UTR 0.31 TCGA-95-7039-01 4 103866435 103866435 C A SLC9B1 Missense_Mutation p.G190C 0.25 deleterious(0.01) possibly_damaging(0.569) TCGA-95-7039-01 4 10446546 10446546 C A ZNF518B Missense_Mutation p.L469F 0.18 deleterious(0.04) benign(0.005) TCGA-95-7039-01 4 108608329 108608329 C T PAPSS1 Missense_Mutation p.R139H 0.22 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 4 108817003 108817003 A T SGMS2 Silent p.T98T 0.28 TCGA-95-7039-01 4 110897316 110897316 G T EGF Missense_Mutation p.D660Y 0.18 deleterious(0) probably_damaging(1) TCGA-95-7039-01 4 113108033 113108033 G T C4orf32 Missense_Mutation p.G113V 0.20 deleterious(0) probably_damaging(1) TCGA-95-7039-01 4 113970948 113970948 A G ANK2 Missense_Mutation p.R22G 0.26 benign(0.068) TCGA-95-7039-01 4 114275488 114275488 C A ANK2 Nonsense_Mutation p.S1905* 0.36 TCGA-95-7039-01 4 114276613 114276613 C A ANK2 Missense_Mutation p.P2280H 0.25 benign(0.011) TCGA-95-7039-01 4 114424132 114424132 T A CAMK2D Intron 0.23 TCGA-95-7039-01 4 115792057 115792057 C A NDST4 Missense_Mutation p.G529V 0.20 deleterious(0) probably_damaging(0.998) TCGA-95-7039-01 4 119948138 119948138 A T SYNPO2 Missense_Mutation p.Q205L 0.30 deleterious(0.02) benign(0.199) TCGA-95-7039-01 4 123161088 123161088 A T KIAA1109 Missense_Mutation p.K1417N 0.40 benign(0.367) TCGA-95-7039-01 4 123166172 123166172 C T KIAA1109 Intron 0.22 TCGA-95-7039-01 4 123237904 123237904 A T KIAA1109 Silent p.R3519R 0.33 TCGA-95-7039-01 4 123246455 123246455 A G KIAA1109 Missense_Mutation p.T3659A 0.21 probably_damaging(0.983) TCGA-95-7039-01 4 126411837 126411837 T C FAT4 Silent p.Y4620Y 0.19 TCGA-95-7039-01 4 1309328 1309328 C T MAEA Silent p.H132H 0.36 TCGA-95-7039-01 4 134072215 134072215 C A PCDH10 Missense_Mutation p.T307N 0.17 deleterious(0.03) possibly_damaging(0.752) TCGA-95-7039-01 4 134073551 134073551 G A PCDH10 Silent p.L752L 0.23 TCGA-95-7039-01 4 141598060 141598060 G T TBC1D9 Silent p.I349I 0.18 TCGA-95-7039-01 4 144442691 144442691 A T SMARCA5 Missense_Mutation p.K121I 0.25 tolerated(0.05) possibly_damaging(0.635) TCGA-95-7039-01 4 144797935 144797935 G T GYPE Silent p.I70I 0.14 TCGA-95-7039-01 4 145039884 145039884 T A GYPA Missense_Mutation p.H85L 0.18 deleterious(0.03) benign(0.013) TCGA-95-7039-01 4 146806953 146806953 C A ZNF827 Missense_Mutation p.D542Y 0.25 deleterious(0) probably_damaging(0.991) TCGA-95-7039-01 4 15009984 15009984 C A CPEB2 Missense_Mutation p.P656Q 0.19 deleterious_low_confidence(0.03) benign(0.003) TCGA-95-7039-01 4 152096538 152096538 C T SH3D19 5'UTR 0.29 TCGA-95-7039-01 4 153268138 153268138 G A FBXW7 Nonsense_Mutation p.R224* 0.20 TCGA-95-7039-01 4 154707014 154707014 A T SFRP2 Splice_Site p.X195_splice 0.17 TCGA-95-7039-01 4 155487640 155487640 G A FGB Splice_Site p.X103_splice 0.13 TCGA-95-7039-01 4 155666013 155666013 G C LRAT Missense_Mutation p.D179H 0.25 tolerated(0.46) possibly_damaging(0.862) TCGA-95-7039-01 4 156651182 156651182 A T GUCY1A3 Missense_Mutation p.R624S 0.10 tolerated(0.05) possibly_damaging(0.62) TCGA-95-7039-01 4 158091864 158091864 G A GLRB Nonsense_Mutation p.W493* 0.08 TCGA-95-7039-01 4 160253760 160253760 A T RAPGEF2 Missense_Mutation p.K521N 0.16 deleterious(0.01) possibly_damaging(0.552) TCGA-95-7039-01 4 162307033 162307033 C A FSTL5 Missense_Mutation p.G804C 0.15 deleterious(0) probably_damaging(0.998) TCGA-95-7039-01 4 166405746 166405746 C A CPE Missense_Mutation p.S321R 0.22 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 4 166929094 166929094 G T TLL1 Splice_Site p.X271_splice 0.24 TCGA-95-7039-01 4 167655991 167655991 G T SPOCK3 3'UTR 0.44 TCGA-95-7039-01 4 169846183 169846183 G C PALLD Missense_Mutation p.K1104N 0.17 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 4 170613336 170613336 C G CLCN3 Missense_Mutation p.I267M 0.14 tolerated(0.13) benign(0.141) TCGA-95-7039-01 4 177143474 177143474 G T ASB5 Missense_Mutation p.A125E 0.33 tolerated(0.17) probably_damaging(0.911) TCGA-95-7039-01 4 177608561 177608561 C T VEGFC Missense_Mutation p.E309K 0.43 tolerated(0.75) possibly_damaging(0.742) TCGA-95-7039-01 4 184612552 184612552 A C TRAPPC11 Silent p.L659L 0.20 TCGA-95-7039-01 4 187086567 187086567 C G FAM149A Silent p.V371V 0.20 TCGA-95-7039-01 4 187172752 187172752 G A KLKB1 Missense_Mutation p.R327H 0.14 tolerated(0.05) probably_damaging(0.984) TCGA-95-7039-01 4 187517714 187517714 C A FAT1 Missense_Mutation p.S4327I 0.33 possibly_damaging(0.555) TCGA-95-7039-01 4 187627857 187627857 G A FAT1 Missense_Mutation p.T1042I 0.15 benign(0.003) TCGA-95-7039-01 4 189067976 189067976 C T TRIML1 Missense_Mutation p.T286M 0.23 tolerated(0.07) benign(0.062) TCGA-95-7039-01 4 1985073 1985073 C A NELFA Missense_Mutation p.K531N 0.09 tolerated(0.08) possibly_damaging(0.895) TCGA-95-7039-01 4 20728923 20728923 A T PACRGL Missense_Mutation p.I236F 0.20 deleterious(0) probably_damaging(0.926) TCGA-95-7039-01 4 2306845 2306845 C G ZFYVE28 Missense_Mutation p.G408R 0.50 deleterious_low_confidence(0) probably_damaging(0.912) TCGA-95-7039-01 4 3443844 3443844 G T HGFAC Missense_Mutation p.G39V 0.36 tolerated_low_confidence(0.11) benign(0.001) TCGA-95-7039-01 4 36195269 36195269 T A ARAP2 Silent p.G496G 0.64 TCGA-95-7039-01 4 36230838 36230838 T A ARAP2 Nonsense_Mutation p.K91* 0.23 TCGA-95-7039-01 4 37962214 37962214 A G PTTG2 Silent p.P53P 0.30 TCGA-95-7039-01 4 40104284 40104284 G T N4BP2 Missense_Mutation p.E273D 0.36 tolerated(0.07) benign(0.169) TCGA-95-7039-01 4 40356565 40356565 T C CHRNA9 3'UTR 0.27 TCGA-95-7039-01 4 46067421 46067421 G A GABRG1 Missense_Mutation p.L168F 0.12 tolerated(0.45) possibly_damaging(0.89) TCGA-95-7039-01 4 46099325 46099325 A T GABRG1 Missense_Mutation p.V49E 0.20 tolerated(0.26) benign(0.069) TCGA-95-7039-01 4 46736914 46736914 A G COX7B2 3'UTR 0.28 TCGA-95-7039-01 4 46930604 46930604 G T GABRA4 Missense_Mutation p.P435T 0.26 tolerated_low_confidence(0.08) possibly_damaging(0.902) TCGA-95-7039-01 4 48490966 48490966 T C SLC10A4 3'UTR 0.39 TCGA-95-7039-01 4 494291 494291 G A PIGG Silent p.V87V 0.31 TCGA-95-7039-01 4 52861910 52861910 G T LRRC66 Nonsense_Mutation p.Y426* 0.15 TCGA-95-7039-01 4 55151608 55151608 C A PDGFRA Missense_Mutation p.F798L 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-95-7039-01 4 55155249 55155249 G T PDGFRA Missense_Mutation p.V950L 0.25 tolerated(0.56) benign(0.046) TCGA-95-7039-01 4 55561731 55561731 C T KIT Missense_Mutation p.P41S 0.47 deleterious(0.03) probably_damaging(0.955) TCGA-95-7039-01 4 55987331 55987331 G T KDR Missense_Mutation p.P32T 0.07 deleterious(0) probably_damaging(1) TCGA-95-7039-01 4 5620325 5620325 C G EVC2 Missense_Mutation p.M862I 0.50 tolerated(0.06) benign(0.231) TCGA-95-7039-01 4 5961151 5961151 A T C4orf50 Missense_Mutation p.I735N 0.23 deleterious(0) possibly_damaging(0.862) TCGA-95-7039-01 4 68928656 68928656 C A TMPRSS11F Intron 0.22 TCGA-95-7039-01 4 70361312 70361312 T A UGT2B4 Missense_Mutation p.I90F 0.15 tolerated(1) benign(0.002) TCGA-95-7039-01 4 7043945 7043945 G A CCDC96 Missense_Mutation p.R241C 0.26 deleterious(0) probably_damaging(0.917) TCGA-95-7039-01 4 70823204 70823204 G T CSN2 Missense_Mutation p.Q155K 0.25 deleterious(0) possibly_damaging(0.621) TCGA-95-7039-01 4 70825776 70825776 T C CSN2 Missense_Mutation p.S25G 0.21 deleterious(0.03) benign(0.184) TCGA-95-7039-01 4 72994393 72994393 G A NPFFR2 Missense_Mutation p.D131N 0.17 tolerated(0.11) benign(0.014) TCGA-95-7039-01 4 73923798 73923798 C A COX18 3'UTR 0.19 TCGA-95-7039-01 4 73923799 73923799 C A COX18 3'UTR 0.19 TCGA-95-7039-01 4 75311105 75311105 C G AREG Missense_Mutation p.L15V 0.38 tolerated_low_confidence(0.07) unknown(0) TCGA-95-7039-01 4 77661953 77661953 G T SHROOM3 Missense_Mutation p.R876L 0.13 tolerated(0.51) benign(0.042) TCGA-95-7039-01 4 79831904 79831904 A T BMP2K Nonsense_Mutation p.K735* 0.16 TCGA-95-7039-01 4 83378077 83378077 G T ENOPH1 Missense_Mutation p.G178C 0.14 deleterious(0) probably_damaging(1) TCGA-95-7039-01 4 88584385 88584385 G A DMP1 Silent p.E485E 0.16 TCGA-95-7039-01 4 90816678 90816678 C A MMRN1 Silent p.R186R 0.22 TCGA-95-7039-01 4 90874223 90874223 C A MMRN1 Missense_Mutation p.P1114H 0.20 deleterious(0) probably_damaging(0.995) TCGA-95-7039-01 4 96762193 96762193 A T PDHA2 Missense_Mutation p.S298C 0.42 deleterious(0) probably_damaging(0.969) TCGA-95-7039-01 5 100147663 100147663 C A ST8SIA4 Missense_Mutation p.R323M 0.38 benign(0.378) TCGA-95-7039-01 5 10973543 10973546 CGGA GGG CTNND2 3'UTR 0.14 TCGA-95-7039-01 5 121356024 121356024 G T SRFBP1 Silent p.V198V 0.14 TCGA-95-7039-01 5 122717864 122717864 C A CEP120 Missense_Mutation p.A682S 0.34 tolerated(0.09) benign(0.115) TCGA-95-7039-01 5 126771134 126771134 G T MEGF10 Missense_Mutation p.R686I 0.47 deleterious(0) benign(0.265) TCGA-95-7039-01 5 127637170 127637170 C G FBN2 Missense_Mutation p.V1984L 0.51 tolerated(0.51) probably_damaging(0.999) TCGA-95-7039-01 5 127685063 127685063 C A FBN2 Missense_Mutation p.D989Y 0.50 deleterious(0) probably_damaging(0.993) TCGA-95-7039-01 5 13752338 13752338 T C DNAH5 Missense_Mutation p.R3645G 0.09 benign(0.415) TCGA-95-7039-01 5 137708510 137708510 A T KDM3B Missense_Mutation p.I114F 0.48 deleterious(0.04) benign(0.009) TCGA-95-7039-01 5 140595396 140595396 C T PCDHB13 Silent p.N567N 0.29 TCGA-95-7039-01 5 140794562 140794562 G T PCDHGA10 Missense_Mutation p.W607L 0.40 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-95-7039-01 5 140794563 140794563 G T PCDHGA10 Missense_Mutation p.W607C 0.41 deleterious_low_confidence(0) possibly_damaging(0.822) TCGA-95-7039-01 5 146030164 146030164 C A PPP2R2B Missense_Mutation p.A194S 0.27 tolerated(0.09) possibly_damaging(0.736) TCGA-95-7039-01 5 14610259 14610259 T C FAM105A Missense_Mutation p.F303L 0.15 tolerated(0.06) benign(0.019) TCGA-95-7039-01 5 149576602 149576602 C A SLC6A7 Intron 0.44 TCGA-95-7039-01 5 153835567 153835567 G T SAP30L Missense_Mutation p.E177D 0.32 tolerated(1) benign(0.001) TCGA-95-7039-01 5 154394958 154394958 T A KIF4B Silent p.T513T 0.22 TCGA-95-7039-01 5 156533651 156533651 C A HAVCR2 Missense_Mutation p.L127F 0.26 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 5 15928016 15928016 C T FBXL7 Missense_Mutation p.R49C 0.09 deleterious(0) probably_damaging(0.985) TCGA-95-7039-01 5 15928503 15928503 G T FBXL7 Missense_Mutation p.C211F 0.09 tolerated(0.12) probably_damaging(0.987) TCGA-95-7039-01 5 161576309 161576309 A G GABRG2 Missense_Mutation p.K413R 0.21 tolerated(0.72) possibly_damaging(0.693) TCGA-95-7039-01 5 16177928 16177928 C T MARCH11 Silent p.L200L 0.30 TCGA-95-7039-01 5 167674058 167674058 C A TENM2 Silent p.V2038V 0.32 TCGA-95-7039-01 5 167957216 167957216 G A FBLL1 Missense_Mutation p.R236H 0.18 deleterious(0.01) benign(0.204) TCGA-95-7039-01 5 167995915 167995915 T C PANK3 Silent p.Q39Q 0.34 TCGA-95-7039-01 5 168201290 168201290 C T SLIT3 Silent p.L415L 0.33 TCGA-95-7039-01 5 168310291 168310291 C A SLIT3 Missense_Mutation p.G155V 0.33 deleterious(0) probably_damaging(1) TCGA-95-7039-01 5 168310292 168310292 C A SLIT3 Missense_Mutation p.G155C 0.31 deleterious(0) probably_damaging(1) TCGA-95-7039-01 5 169507218 169507218 G A DOCK2 Missense_Mutation p.A1740T 0.23 tolerated_low_confidence(0.59) benign(0.001) TCGA-95-7039-01 5 170222293 170222293 G T GABRP Missense_Mutation p.D108Y 0.34 deleterious(0) probably_damaging(0.976) TCGA-95-7039-01 5 170235603 170235603 G A GABRP Splice_Site p.X227_splice 0.20 TCGA-95-7039-01 5 171481639 171481639 G T STK10 Missense_Mutation p.H862Q 0.22 tolerated(0.07) possibly_damaging(0.907) TCGA-95-7039-01 5 171765999 171765999 C A SH3PXD2B Nonsense_Mutation p.E704* 0.29 TCGA-95-7039-01 5 172395553 172395553 G T RPL26L1 Missense_Mutation p.R87L 0.17 deleterious(0.02) benign(0.011) TCGA-95-7039-01 5 17275863 17275863 G T BASP1 Missense_Mutation p.A180S 0.10 deleterious(0.02) probably_damaging(0.925) TCGA-95-7039-01 5 176289768 176289768 C T UNC5A Nonsense_Mutation p.Q72* 0.32 TCGA-95-7039-01 5 178580565 178580565 A G ADAMTS2 Missense_Mutation p.L481P 0.19 deleterious(0.04) probably_damaging(0.999) TCGA-95-7039-01 5 179192625 179192625 G T MAML1 Missense_Mutation p.S205I 0.26 deleterious(0.02) benign(0.429) TCGA-95-7039-01 5 179221117 179221117 C A LTC4S Silent p.T12T 0.23 TCGA-95-7039-01 5 180038481 180038481 T A FLT4 Splice_Site p.X1180_splice 0.21 TCGA-95-7039-01 5 180219260 180219260 C A MGAT1 Missense_Mutation p.V238F 0.27 probably_damaging(0.992) TCGA-95-7039-01 5 19612661 19612661 A T CDH18 Missense_Mutation p.H231Q 0.11 tolerated(1) possibly_damaging(0.867) TCGA-95-7039-01 5 21765189 21765189 G T CDH12 Missense_Mutation p.S471R 0.32 deleterious(0.01) possibly_damaging(0.535) TCGA-95-7039-01 5 24498512 24498512 C A CDH10 Missense_Mutation p.G504W 0.59 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 5 24535843 24535843 C G CDH10 Silent p.G205G 0.17 TCGA-95-7039-01 5 24537582 24537582 C A CDH10 Nonsense_Mutation p.E145* 0.12 TCGA-95-7039-01 5 26881700 26881700 G T CDH9 Missense_Mutation p.Q639K 0.45 tolerated(0.13) probably_damaging(0.981) TCGA-95-7039-01 5 32229899 32229899 G A MTMR12 Silent p.D743D 0.16 TCGA-95-7039-01 5 32243643 32243643 A T MTMR12 Missense_Mutation p.W362R 0.16 deleterious(0) possibly_damaging(0.775) TCGA-95-7039-01 5 32263282 32263282 C A MTMR12 Missense_Mutation p.R217L 0.13 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 5 32263287 32263287 C A MTMR12 Silent p.L215L 0.15 TCGA-95-7039-01 5 32739067 32739067 T A NPR3 Silent p.P330P 0.13 TCGA-95-7039-01 5 33616005 33616005 A T ADAMTS12 Missense_Mutation p.F772L 0.08 deleterious(0) possibly_damaging(0.901) TCGA-95-7039-01 5 34035752 34035752 C A C1QTNF3 Nonsense_Mutation p.G139* 0.55 TCGA-95-7039-01 5 35753794 35753794 C A SPEF2 Missense_Mutation p.D1133E 0.13 deleterious(0.02) probably_damaging(0.991) TCGA-95-7039-01 5 35957310 35957310 A C UGT3A1 Missense_Mutation p.L352R 0.06 deleterious(0) probably_damaging(0.997) TCGA-95-7039-01 5 36962328 36962328 C T NIPBL Missense_Mutation p.P188S 0.12 tolerated_low_confidence(0.24) benign(0.007) TCGA-95-7039-01 5 37006617 37006617 G C NIPBL Missense_Mutation p.Q1338H 0.07 tolerated(0.05) probably_damaging(0.966) TCGA-95-7039-01 5 38933124 38933124 C G OSMR Missense_Mutation p.L840V 0.49 tolerated(0.11) benign(0.426) TCGA-95-7039-01 5 39376927 39376927 C A DAB2 Missense_Mutation p.M654I 0.14 deleterious(0.02) benign(0.161) TCGA-95-7039-01 5 41142944 41142944 C T C6 Missense_Mutation p.G930R 0.08 deleterious(0.01) possibly_damaging(0.487) TCGA-95-7039-01 5 41381964 41381964 C T PLCXD3 Missense_Mutation p.G259E 0.09 deleterious(0.05) probably_damaging(0.937) TCGA-95-7039-01 5 43548014 43548014 T G PAIP1 Missense_Mutation p.E146A 0.15 tolerated(0.53) benign(0.015) TCGA-95-7039-01 5 45262699 45262699 G C HCN1 Missense_Mutation p.P666R 0.09 deleterious_low_confidence(0.04) benign(0.418) TCGA-95-7039-01 5 5303493 5303493 A G ADAMTS16 Missense_Mutation p.S968G 0.23 deleterious(0.04) benign(0.114) TCGA-95-7039-01 5 5461238 5461238 A G KIAA0947 Silent p.E597E 0.08 TCGA-95-7039-01 5 56542933 56542933 A G GPBP1 Missense_Mutation p.N239S 0.26 tolerated(0.18) benign(0.041) TCGA-95-7039-01 5 70785389 70785389 G T BDP1 Missense_Mutation p.D458Y 0.39 tolerated(0.05) probably_damaging(0.994) TCGA-95-7039-01 5 72875896 72875896 G T UTP15 Nonsense_Mutation p.E512* 0.08 TCGA-95-7039-01 5 7414860 7414860 G T ADCY2 Missense_Mutation p.G129C 0.36 deleterious(0) probably_damaging(0.94) TCGA-95-7039-01 5 7784551 7784551 C T ADCY2 Silent p.L820L 0.08 TCGA-95-7039-01 5 7789875 7789875 G A ADCY2 Missense_Mutation p.V864M 0.17 deleterious(0) probably_damaging(1) TCGA-95-7039-01 5 79498704 79498704 C A SERINC5 Splice_Site p.X65_splice 0.25 TCGA-95-7039-01 5 82841407 82841407 C A VCAN Missense_Mutation p.P3106H 0.25 deleterious(0) probably_damaging(0.95) TCGA-95-7039-01 5 82841424 82841424 G T VCAN Missense_Mutation p.V3112L 0.30 deleterious(0.01) probably_damaging(0.917) TCGA-95-7039-01 5 82937337 82937337 T A HAPLN1 Missense_Mutation p.Y348F 0.19 tolerated(0.21) possibly_damaging(0.834) TCGA-95-7039-01 5 83549934 83549934 G T EDIL3 Missense_Mutation p.T55K 0.11 deleterious(0) benign(0.057) TCGA-95-7039-01 5 887578 887578 G A BRD9 Silent p.F205F 0.12 TCGA-95-7039-01 5 89933730 89933730 G T GPR98 Silent p.P735P 0.21 TCGA-95-7039-01 5 89933731 89933731 G T GPR98 Nonsense_Mutation p.E736* 0.20 TCGA-95-7039-01 5 9066568 9066568 C A SEMA5A Missense_Mutation p.C755F 0.12 deleterious(0) probably_damaging(0.997) TCGA-95-7039-01 5 9136667 9136667 C T SEMA5A Silent p.L516L 0.17 TCGA-95-7039-01 5 94353173 94353173 C G MCTP1 Missense_Mutation p.A246P 0.41 deleterious(0.03) benign(0.327) TCGA-95-7039-01 5 9629221 9629221 C T TAS2R1 3'UTR 0.09 TCGA-95-7039-01 6 100056737 100056737 C A PRDM13 Missense_Mutation p.P89T 0.41 deleterious(0.04) possibly_damaging(0.625) TCGA-95-7039-01 6 100838856 100838856 G T SIM1 Missense_Mutation p.P561H 0.09 tolerated_low_confidence(0.13) probably_damaging(0.989) TCGA-95-7039-01 6 101073156 101073156 C A ASCC3 Missense_Mutation p.R1566L 0.30 deleterious(0) benign(0.257) TCGA-95-7039-01 6 101307034 101307034 C A ASCC3 Intron 0.33 TCGA-95-7039-01 6 106543577 106543577 C T PRDM1 Missense_Mutation p.P127S 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-95-7039-01 6 107595379 107595379 G A PDSS2 Missense_Mutation p.H162Y 0.31 deleterious(0) probably_damaging(1) TCGA-95-7039-01 6 108041845 108041845 G T SCML4 Intron 0.44 TCGA-95-7039-01 6 108070974 108070974 G T SCML4 Missense_Mutation p.P67Q 0.23 deleterious(0.01) probably_damaging(0.942) TCGA-95-7039-01 6 108214792 108214792 G C SEC63 Missense_Mutation p.T523S 0.13 tolerated(0.73) benign(0.004) TCGA-95-7039-01 6 10874559 10874559 G T GCM2 Missense_Mutation p.P397H 0.29 deleterious(0) probably_damaging(0.944) TCGA-95-7039-01 6 109274530 109274530 G T ARMC2 Missense_Mutation p.V631L 0.21 deleterious(0.02) benign(0.039) TCGA-95-7039-01 6 109787142 109787142 T C ZBTB24 Missense_Mutation p.Q669R 0.19 tolerated(0.19) benign(0.328) TCGA-95-7039-01 6 109850183 109850183 C A AK9 Intron 0.56 TCGA-95-7039-01 6 111983136 111983136 C A FYN Nonsense_Mutation p.E474* 0.15 TCGA-95-7039-01 6 112462121 112462121 C A LAMA4 Silent p.V939V 0.27 TCGA-95-7039-01 6 117113850 117113850 C A GPRC6A Nonsense_Mutation p.E746* 0.45 TCGA-95-7039-01 6 11723638 11723638 T A ADTRP Missense_Mutation p.Y219F 0.17 tolerated(0.22) benign(0.004) TCGA-95-7039-01 6 119222019 119222019 C A ASF1A Silent p.P66P 0.21 TCGA-95-7039-01 6 129486760 129486760 T A LAMA2 Missense_Mutation p.C416S 0.17 deleterious(0) probably_damaging(1) TCGA-95-7039-01 6 129634139 129634139 G T LAMA2 Missense_Mutation p.C1103F 0.21 deleterious(0) probably_damaging(1) TCGA-95-7039-01 6 130505706 130505706 A T SAMD3 Nonsense_Mutation p.L149* 0.16 TCGA-95-7039-01 6 132966951 132966951 G T TAAR1 Silent p.S64S 0.17 TCGA-95-7039-01 6 135239893 135239893 G A ALDH8A1 Missense_Mutation p.P375L 0.22 deleterious(0) probably_damaging(0.982) TCGA-95-7039-01 6 136589325 136589325 C A BCLAF1 Missense_Mutation p.G791V 0.09 deleterious(0) probably_damaging(0.979) TCGA-95-7039-01 6 136597197 136597197 G C BCLAF1 Missense_Mutation p.T489R 0.12 tolerated(0.07) possibly_damaging(0.702) TCGA-95-7039-01 6 136597469 136597469 T A BCLAF1 Missense_Mutation p.E398D 0.14 tolerated(0.36) benign(0.006) TCGA-95-7039-01 6 137468906 137468906 A T IL22RA2 Missense_Mutation p.Y199N 0.15 deleterious(0) probably_damaging(0.996) TCGA-95-7039-01 6 142741181 142741181 G T GPR126 Missense_Mutation p.A1087S 0.17 deleterious(0.01) possibly_damaging(0.836) TCGA-95-7039-01 6 143080981 143080981 C A HIVEP2 Missense_Mutation p.R2148S 0.44 tolerated(0.07) probably_damaging(0.996) TCGA-95-7039-01 6 144179062 144179062 G A LTV1 Missense_Mutation p.S238N 0.12 deleterious(0) probably_damaging(0.994) TCGA-95-7039-01 6 146126176 146126176 C A FBXO30 Missense_Mutation p.V456F 0.12 tolerated(1) benign(0) TCGA-95-7039-01 6 146271525 146271525 T G SHPRH Missense_Mutation p.Q286P 0.27 deleterious(0.05) benign(0.136) TCGA-95-7039-01 6 146351134 146351134 G T GRM1 Missense_Mutation p.G161C 0.39 deleterious(0) probably_damaging(1) TCGA-95-7039-01 6 146480667 146480667 C A GRM1 Missense_Mutation p.T295K 0.40 deleterious(0) probably_damaging(0.987) TCGA-95-7039-01 6 146720058 146720058 G T GRM1 Missense_Mutation p.R628L 0.24 deleterious(0) probably_damaging(0.997) TCGA-95-7039-01 6 147685201 147685201 A C STXBP5 Silent p.R994R 0.16 TCGA-95-7039-01 6 147885734 147885734 C T SAMD5 3'UTR 0.25 TCGA-95-7039-01 6 154414435 154414435 G T OPRM1 Intron 0.15 TCGA-95-7039-01 6 155750056 155750056 G T NOX3 Silent p.T339T 0.15 TCGA-95-7039-01 6 159654268 159654268 C G FNDC1 Missense_Mutation p.D908E 0.58 tolerated_low_confidence(0.4) unknown(0) TCGA-95-7039-01 6 161470144 161470144 G T MAP3K4 Missense_Mutation p.Q280H 0.08 deleterious(0) probably_damaging(0.998) TCGA-95-7039-01 6 161560499 161560499 C T AGPAT4 Missense_Mutation p.G333R 0.19 deleterious(0) probably_damaging(1) TCGA-95-7039-01 6 165715190 165715190 G T C6orf118 Silent p.A207A 0.19 TCGA-95-7039-01 6 167592025 167592025 G C TCP10L2 Missense_Mutation p.G218R 0.08 tolerated(0.05) probably_damaging(0.964) TCGA-95-7039-01 6 1961137 1961137 C A GMDS Missense_Mutation p.D137Y 0.44 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-95-7039-01 6 25762211 25762211 C G SLC17A4 Silent p.V7V 0.25 TCGA-95-7039-01 6 26285734 26285734 G C HIST1H4H 5'UTR 0.24 TCGA-95-7039-01 6 28251657 28251657 G T PGBD1 Missense_Mutation p.D23Y 0.10 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-95-7039-01 6 28543261 28543261 C A SCAND3 Silent p.R407R 0.11 TCGA-95-7039-01 6 29638542 29638542 G A MOG Intron 0.42 TCGA-95-7039-01 6 29976208 29976208 G C ZNRD1-AS1 Intron 0.17 TCGA-95-7039-01 6 30166684 30166684 C A TRIM26 Missense_Mutation p.R66L 0.40 deleterious(0) probably_damaging(0.966) TCGA-95-7039-01 6 3155958 3155958 C A TUBB2A Missense_Mutation p.V60L 0.15 deleterious_low_confidence(0.01) benign(0.123) TCGA-95-7039-01 6 32087620 32087620 G A ATF6B Missense_Mutation p.S316F 0.22 deleterious(0.01) possibly_damaging(0.498) TCGA-95-7039-01 6 32183075 32183075 A T NOTCH4 Missense_Mutation p.L650H 0.19 deleterious(0.03) probably_damaging(0.94) TCGA-95-7039-01 6 3225019 3225020 - C TUBB2B Frame_Shift_Ins p.E435Gfs*89 0.11 TCGA-95-7039-01 6 33257991 33257991 A G PFDN6 Silent p.A35A 0.16 TCGA-95-7039-01 6 34614553 34614553 C A C6orf106 Silent p.G112G 0.13 TCGA-95-7039-01 6 35210811 35210811 G T SCUBE3 Silent p.L569L 0.15 TCGA-95-7039-01 6 36842579 36842579 T A PPIL1 5'UTR 0.36 TCGA-95-7039-01 6 38560523 38560523 T A BTBD9 Nonsense_Mutation p.K215* 0.15 TCGA-95-7039-01 6 39895354 39895354 C A MOCS1 5'UTR 0.36 TCGA-95-7039-01 6 39895355 39895355 C A MOCS1 5'UTR 0.36 TCGA-95-7039-01 6 40359650 40359650 G A LRFN2 3'UTR 0.15 TCGA-95-7039-01 6 44197352 44197352 C T SLC29A1 Silent p.S46S 0.12 TCGA-95-7039-01 6 44197727 44197727 A - SLC29A1 Frame_Shift_Del p.Q133Rfs*12 0.08 TCGA-95-7039-01 6 46672422 46672422 C G PLA2G7 Missense_Mutation p.D401H 0.16 deleterious(0) probably_damaging(0.961) TCGA-95-7039-01 6 46672424 46672424 T G PLA2G7 Missense_Mutation p.K400T 0.16 deleterious(0) probably_damaging(0.979) TCGA-95-7039-01 6 47649714 47649714 C A GPR111 Missense_Mutation p.S473R 0.33 tolerated(0.14) benign(0.022) TCGA-95-7039-01 6 47847003 47847003 G A PTCHD4 Missense_Mutation p.P526L 0.44 deleterious(0.01) probably_damaging(0.997) TCGA-95-7039-01 6 49936501 49936501 G A DEFB113 Silent p.C46C 0.17 TCGA-95-7039-01 6 49986759 49986759 C A DEFB110 Missense_Mutation p.Q45H 0.40 tolerated(0.54) possibly_damaging(0.685) TCGA-95-7039-01 6 50807921 50807921 T G TFAP2B Missense_Mutation p.F331L 0.20 deleterious(0) probably_damaging(0.991) TCGA-95-7039-01 6 51524559 51524559 T A PKHD1 Silent p.S3455S 0.12 TCGA-95-7039-01 6 52052579 52052579 G T IL17A Missense_Mutation p.R69L 0.17 deleterious(0) probably_damaging(1) TCGA-95-7039-01 6 52657702 52657702 G C GSTA1 Nonsense_Mutation p.Y166* 0.16 TCGA-95-7039-01 6 52871145 52871145 A G ICK Missense_Mutation p.V571A 0.06 deleterious(0.04) benign(0.097) TCGA-95-7039-01 6 55198732 55198732 C G GFRAL Missense_Mutation p.I102M 0.22 deleterious(0.04) benign(0.02) TCGA-95-7039-01 6 6305730 6305730 C A F13A1 Missense_Mutation p.W58L 0.18 tolerated(0.36) benign(0.124) TCGA-95-7039-01 6 63989854 63989854 C G LGSN 3'UTR 0.15 TCGA-95-7039-01 6 63990329 63990329 A T LGSN Missense_Mutation p.L376Q 0.25 tolerated(0.42) benign(0.014) TCGA-95-7039-01 6 70064178 70064178 A G BAI3 Silent p.A1171A 0.21 TCGA-95-7039-01 6 70890247 70890247 C A COL19A1 Missense_Mutation p.P904Q 0.47 deleterious(0.02) possibly_damaging(0.854) TCGA-95-7039-01 6 71004241 71004241 C T COL9A1 Missense_Mutation p.E109K 0.23 unknown(0) TCGA-95-7039-01 6 71009794 71009794 T A COL9A1 Missense_Mutation p.Q84L 0.24 unknown(0) TCGA-95-7039-01 6 71566579 71566579 A G SMAP1 Silent p.P269P 0.22 TCGA-95-7039-01 6 71603926 71603926 C A B3GAT2 Missense_Mutation p.G214V 0.42 deleterious(0) probably_damaging(1) TCGA-95-7039-01 6 74150094 74150094 C A MB21D1 Missense_Mutation p.V318L 0.49 tolerated(0.06) benign(0.439) TCGA-95-7039-01 6 75865471 75865471 T A COL12A1 Missense_Mutation p.Y1117F 0.21 probably_damaging(0.996) TCGA-95-7039-01 6 76018362 76018362 C T FILIP1 3'UTR 0.28 TCGA-95-7039-01 6 80715639 80715639 T - TTK Frame_Shift_Del p.F27Lfs*10 0.31 TCGA-95-7039-01 6 82910357 82910357 T G IBTK Silent p.V953V 0.20 TCGA-95-7039-01 6 84634200 84634200 G C CYB5R4 Missense_Mutation p.E235Q 0.21 tolerated(0.5) benign(0.052) TCGA-95-7039-01 6 88049924 88049924 G T SMIM8 Missense_Mutation p.D76Y 0.34 deleterious(0) possibly_damaging(0.718) TCGA-95-7039-01 6 89859008 89859008 G A PM20D2 Missense_Mutation p.E164K 0.24 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 6 89977760 89977760 G T GABRR2 Missense_Mutation p.Q190K 0.27 deleterious(0) probably_damaging(0.994) TCGA-95-7039-01 6 90089038 90089038 A T RRAGD Missense_Mutation p.Y222N 0.20 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 6 90347478 90347478 T C LYRM2 Missense_Mutation p.K57E 0.22 deleterious(0.03) possibly_damaging(0.606) TCGA-95-7039-01 6 90660542 90660542 C A BACH2 Missense_Mutation p.R428L 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-95-7039-01 6 96054232 96054232 G T MANEA Missense_Mutation p.S447I 0.29 tolerated(0.21) benign(0.004) TCGA-95-7039-01 6 97677230 97677230 C A MMS22L Missense_Mutation p.G527C 0.35 deleterious(0.02) benign(0.13) TCGA-95-7039-01 7 100210495 100210495 C A MOSPD3 Silent p.P27P 0.29 TCGA-95-7039-01 7 100663478 100663478 C A MUC17 Missense_Mutation p.P21Q 0.32 benign(0.002) TCGA-95-7039-01 7 100684764 100684764 A G MUC17 Missense_Mutation p.E3356G 0.14 benign(0.012) TCGA-95-7039-01 7 103206745 103206745 T C RELN Missense_Mutation p.Y1621C 0.18 deleterious(0) probably_damaging(0.998) TCGA-95-7039-01 7 103969353 103969353 C T LHFPL3 Silent p.I42I 0.27 TCGA-95-7039-01 7 107432291 107432291 G T SLC26A3 Silent p.S122S 0.27 TCGA-95-7039-01 7 107432292 107432292 G T SLC26A3 Missense_Mutation p.S122Y 0.28 deleterious(0) probably_damaging(1) TCGA-95-7039-01 7 107823173 107823173 C A NRCAM Missense_Mutation p.E832D 0.31 tolerated(0.11) benign(0.116) TCGA-95-7039-01 7 112098960 112098960 C G IFRD1 Missense_Mutation p.L152V 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-95-7039-01 7 112724719 112724719 C A GPR85 Missense_Mutation p.A20S 0.20 tolerated(0.72) benign(0.011) TCGA-95-7039-01 7 113518730 113518730 C A PPP1R3A Missense_Mutation p.R806L 0.24 tolerated(0.66) benign(0.031) TCGA-95-7039-01 7 120911434 120911434 G T CPED1 Missense_Mutation p.G940W 0.49 deleterious(0) probably_damaging(1) TCGA-95-7039-01 7 120911435 120911435 G T CPED1 Missense_Mutation p.G940V 0.51 deleterious(0) probably_damaging(1) TCGA-95-7039-01 7 122634999 122634999 G T TAS2R16 Silent p.A230A 0.10 TCGA-95-7039-01 7 123514871 123514871 T A HYAL4 Silent p.V337V 0.09 TCGA-95-7039-01 7 126882944 126882944 C G GRM8 Silent p.T105T 0.16 TCGA-95-7039-01 7 128033047 128033047 C T IMPDH1 3'UTR 0.12 TCGA-95-7039-01 7 128415650 128415650 C G OPN1SW Missense_Mutation p.L65F 0.30 deleterious(0.01) probably_damaging(1) TCGA-95-7039-01 7 128482971 128482971 C G FLNC Missense_Mutation p.A838G 0.30 deleterious(0.02) benign(0.195) TCGA-95-7039-01 7 128490526 128490526 G T FLNC Missense_Mutation p.G1796V 0.36 deleterious(0) probably_damaging(1) TCGA-95-7039-01 7 128846355 128846355 C A SMO Nonsense_Mutation p.Y397* 0.15 TCGA-95-7039-01 7 128849169 128849169 C A SMO Missense_Mutation p.T466N 0.35 deleterious(0) probably_damaging(0.952) TCGA-95-7039-01 7 131878928 131878928 C G PLXNA4 Missense_Mutation p.E917Q 0.37 tolerated(0.15) possibly_damaging(0.674) TCGA-95-7039-01 7 132193255 132193255 C A PLXNA4 Silent p.G66G 0.40 TCGA-95-7039-01 7 133622741 133622741 G A EXOC4 Missense_Mutation p.A709T 0.35 tolerated(0.51) benign(0.194) TCGA-95-7039-01 7 134215442 134215442 A G AKR1B10 Silent p.A38A 0.12 TCGA-95-7039-01 7 134617956 134617956 A G CALD1 Missense_Mutation p.T146A 0.31 tolerated(0.19) unknown(0) TCGA-95-7039-01 7 135309933 135309933 G C NUP205 Missense_Mutation p.D1501H 0.15 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 7 136701006 136701007 - T CHRM2 Frame_Shift_Ins p.R466Kfs*6 0.21 TCGA-95-7039-01 7 136848978 136848978 G T hsa-mir-490 Intron 0.34 TCGA-95-7039-01 7 136912695 136912695 G T PTN 3'UTR 0.46 TCGA-95-7039-01 7 137080404 137080404 G T DGKI Missense_Mutation p.N1007K 0.17 deleterious(0.03) benign(0.193) TCGA-95-7039-01 7 138239468 138239468 G T TRIM24 Missense_Mutation p.E429D 0.38 tolerated(0.23) benign(0.003) TCGA-95-7039-01 7 140476711 140476711 C T BRAF Splice_Site p.X565_splice 0.14 TCGA-95-7039-01 7 141490554 141490554 G T TAS2R5 Silent p.L131L 0.30 TCGA-95-7039-01 7 141795484 141795484 C A MGAM Silent p.G1630G 0.23 TCGA-95-7039-01 7 142124152 142124152 C T TRBV6-8 Missense_Mutation p.C109Y 0.28 deleterious(0.01) probably_damaging(0.943) TCGA-95-7039-01 7 142250940 142250940 C A TRBV6-4 Missense_Mutation p.R36L 0.29 tolerated(0.08) benign(0.021) TCGA-95-7039-01 7 142378658 142378658 G T MTRNR2L6 3'Flank 0.23 TCGA-95-7039-01 7 142651292 142651292 C G KEL Missense_Mutation p.M301I 0.30 tolerated(0.42) benign(0.026) TCGA-95-7039-01 7 143053913 143053913 T A FAM131B Silent p.G271G 0.18 TCGA-95-7039-01 7 143053924 143053924 G T FAM131B Missense_Mutation p.P268T 0.38 tolerated(0.84) benign(0.002) TCGA-95-7039-01 7 143701304 143701304 G T OR6B1 Missense_Mutation p.W72L 0.18 tolerated(0.08) possibly_damaging(0.56) TCGA-95-7039-01 7 144345917 144345917 C G TPK1 Missense_Mutation p.E81Q 0.10 tolerated(0.11) benign(0.041) TCGA-95-7039-01 7 14775792 14775792 A G DGKB Missense_Mutation p.F66L 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-95-7039-01 7 147869463 147869463 C T CNTNAP2 Missense_Mutation p.T968I 0.16 deleterious(0) benign(0.305) TCGA-95-7039-01 7 148080953 148080953 C A CNTNAP2 Missense_Mutation p.P1230T 0.21 tolerated(0.24) benign(0.014) TCGA-95-7039-01 7 149462026 149462026 C G ZNF467 Missense_Mutation p.R522P 0.08 deleterious(0) probably_damaging(1) TCGA-95-7039-01 7 149477177 149477177 A T SSPO RNA 0.31 TCGA-95-7039-01 7 149490413 149490413 C A SSPO RNA 0.21 TCGA-95-7039-01 7 149493717 149493717 G T SSPO RNA 0.45 TCGA-95-7039-01 7 150069097 150069097 G T REPIN1 Missense_Mutation p.R313L 0.14 deleterious(0) probably_damaging(0.91) TCGA-95-7039-01 7 150094380 150094380 G T ZNF775 Missense_Mutation p.G271C 0.62 tolerated(0.06) benign(0.189) TCGA-95-7039-01 7 150267034 150267034 A T GIMAP4 Silent p.P15P 0.24 TCGA-95-7039-01 7 150488558 150488558 G A TMEM176B 3'UTR 0.23 TCGA-95-7039-01 7 150698406 150698406 T A NOS3 Missense_Mutation p.C441S 0.46 deleterious(0.01) probably_damaging(0.998) TCGA-95-7039-01 7 150746083 150746083 C A ASIC3 Missense_Mutation p.S37R 0.16 tolerated(0.75) benign(0.004) TCGA-95-7039-01 7 19184587 19184587 G C FERD3L Nonsense_Mutation p.Y133* 0.17 TCGA-95-7039-01 7 21723444 21723444 C G DNAH11 Missense_Mutation p.H1842D 0.09 probably_damaging(1) TCGA-95-7039-01 7 23651005 23651005 T - CCDC126 Frame_Shift_Del p.W25Gfs*3 0.11 TCGA-95-7039-01 7 23651099 23651099 A T CCDC126 Missense_Mutation p.R55S 0.26 deleterious(0) benign(0.322) TCGA-95-7039-01 7 2416670 2416670 G T EIF3B Missense_Mutation p.R705L 0.24 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 7 2418366 2418366 C T EIF3B Nonsense_Mutation p.Q733* 0.43 TCGA-95-7039-01 7 27135176 27135176 A T HOXA1 Missense_Mutation p.V119E 0.59 tolerated(0.51) probably_damaging(0.98) TCGA-95-7039-01 7 29552359 29552359 G T CHN2 3'UTR 0.71 TCGA-95-7039-01 7 29915475 29915475 G A WIPF3 Silent p.R40R 0.10 TCGA-95-7039-01 7 30825406 30825406 C T FAM188B Missense_Mutation p.S154L 0.18 tolerated(0.14) benign(0.008) TCGA-95-7039-01 7 37354510 37354510 G T ELMO1 Missense_Mutation p.H46N 0.56 deleterious(0.01) benign(0.001) TCGA-95-7039-01 7 41739856 41739856 C T INHBA Silent p.A39A 0.45 TCGA-95-7039-01 7 4249736 4249736 G T SDK1 Silent p.A1827A 0.34 TCGA-95-7039-01 7 44146316 44146316 C T AEBP1 Missense_Mutation p.P142L 0.14 deleterious_low_confidence(0) unknown(0) TCGA-95-7039-01 7 44664004 44664004 A C OGDH Missense_Mutation p.K21T 0.68 tolerated(0.2) benign(0.021) TCGA-95-7039-01 7 47467916 47467916 G C TNS3 Nonsense_Mutation p.S128* 0.23 TCGA-95-7039-01 7 47933617 47933617 C A PKD1L1 Missense_Mutation p.V771L 0.75 tolerated(0.12) possibly_damaging(0.465) TCGA-95-7039-01 7 49842402 49842402 C A VWC2 Nonsense_Mutation p.Y264* 0.12 TCGA-95-7039-01 7 55266471 55266471 C A EGFR Missense_Mutation p.S921R 0.12 tolerated(1) benign(0.42) TCGA-95-7039-01 7 55755566 55755566 C G RNU6-389P 3'Flank 0.19 TCGA-95-7039-01 7 57528796 57528796 A T ZNF716 Missense_Mutation p.E210V 0.48 tolerated(0.19) probably_damaging(0.996) TCGA-95-7039-01 7 5966163 5966163 A G RSPH10B Silent p.L817L 0.20 TCGA-95-7039-01 7 6217528 6217528 T A CYTH3 Silent p.P98P 0.44 TCGA-95-7039-01 7 63727040 63727040 G T ZNF679 Missense_Mutation p.K343N 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-95-7039-01 7 64388439 64388439 C A ZNF273 Missense_Mutation p.Q245K 0.13 tolerated(0.32) benign(0.103) TCGA-95-7039-01 7 6639514 6639514 A T C7orf26 Missense_Mutation p.E212V 0.40 deleterious(0.03) possibly_damaging(0.607) TCGA-95-7039-01 7 71135054 71135054 C A WBSCR17 Missense_Mutation p.P455Q 0.31 deleterious(0.01) probably_damaging(0.994) TCGA-95-7039-01 7 74191693 74191693 T A NCF1 Missense_Mutation p.H51Q 0.25 tolerated(0.24) probably_damaging(0.973) TCGA-95-7039-01 7 76112351 76112351 C T DTX2 Silent p.N265N 0.06 TCGA-95-7039-01 7 79082430 79082430 C G MAGI2 Silent p.V69V 0.27 TCGA-95-7039-01 7 79082635 79082635 A G MAGI2 Translation_Start_Site p.M1? 0.10 deleterious(0) benign(0.01) TCGA-95-7039-01 7 803466 803466 G T HEATR2 Silent p.L546L 0.15 TCGA-95-7039-01 7 81350088 81350088 C A HGF Missense_Mutation p.W415L 0.38 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 7 81386553 81386553 C A HGF Missense_Mutation p.S145I 0.29 deleterious(0) probably_damaging(0.961) TCGA-95-7039-01 7 81386583 81386583 C A HGF Missense_Mutation p.S135I 0.09 deleterious(0.01) possibly_damaging(0.542) TCGA-95-7039-01 7 81388113 81388113 C A HGF Missense_Mutation p.V88F 0.39 tolerated(0.7) possibly_damaging(0.81) TCGA-95-7039-01 7 81596490 81596490 T A CACNA2D1 Missense_Mutation p.S833C 0.11 tolerated(0.19) probably_damaging(0.936) TCGA-95-7039-01 7 82545187 82545187 C G PCLO Missense_Mutation p.D4039H 0.32 unknown(0) TCGA-95-7039-01 7 83036427 83036427 C A SEMA3E Missense_Mutation p.G267W 0.26 deleterious(0) probably_damaging(1) TCGA-95-7039-01 7 87021880 87021880 A T CROT Splice_Site p.X504_splice 0.15 TCGA-95-7039-01 7 87037415 87037415 A G ABCB4 Missense_Mutation p.C1073R 0.25 deleterious(0) probably_damaging(0.994) TCGA-95-7039-01 7 87737540 87737540 C G ADAM22 Nonsense_Mutation p.S147* 0.10 TCGA-95-7039-01 7 88963430 88963430 C A ZNF804B Silent p.A378A 0.33 TCGA-95-7039-01 7 91631164 91631164 G T AKAP9 Nonsense_Mutation p.E645* 0.43 TCGA-95-7039-01 7 92732038 92732038 G A SAMD9 Nonsense_Mutation p.Q1125* 0.31 TCGA-95-7039-01 7 92764098 92764098 A G SAMD9L Missense_Mutation p.L396P 0.16 tolerated(0.32) benign(0.008) TCGA-95-7039-01 7 94043556 94043556 C T COL1A2 Missense_Mutation p.P563L 0.11 unknown(0) TCGA-95-7039-01 7 94049850 94049850 C T COL1A2 Intron 0.30 TCGA-95-7039-01 7 94057735 94057735 C A COL1A2 Missense_Mutation p.S1219R 0.33 unknown(0) TCGA-95-7039-01 7 99454461 99454461 A T CYP3A43 Silent p.R268R 0.35 TCGA-95-7039-01 8 104898412 104898412 G A RIMS2 Missense_Mutation p.D529N 0.27 deleterious_low_confidence(0.03) probably_damaging(0.966) TCGA-95-7039-01 8 105161047 105161047 G T RIMS2 Intron 0.44 TCGA-95-7039-01 8 105361495 105361495 G T DCSTAMP Missense_Mutation p.G239C 0.52 deleterious(0) probably_damaging(0.91) TCGA-95-7039-01 8 106813771 106813771 T A ZFPM2 Missense_Mutation p.N487K 0.48 tolerated(0.12) benign(0.046) TCGA-95-7039-01 8 106813782 106813782 C A ZFPM2 Missense_Mutation p.S491Y 0.16 deleterious(0.03) benign(0.309) TCGA-95-7039-01 8 110457187 110457187 C T PKHD1L1 Missense_Mutation p.H1697Y 0.41 tolerated(0.27) benign(0.005) TCGA-95-7039-01 8 113293519 113293519 G T CSMD3 Missense_Mutation p.T3131K 0.44 tolerated(0.13) probably_damaging(0.944) TCGA-95-7039-01 8 113293559 113293559 C A CSMD3 Nonsense_Mutation p.G3118* 0.44 TCGA-95-7039-01 8 113504867 113504867 C A CSMD3 Missense_Mutation p.G1710V 0.21 deleterious(0) probably_damaging(0.994) TCGA-95-7039-01 8 113569024 113569024 C A CSMD3 Missense_Mutation p.R1401M 0.43 deleterious(0.01) probably_damaging(0.992) TCGA-95-7039-01 8 116599565 116599565 C T TRPS1 Missense_Mutation p.G788E 0.45 tolerated_low_confidence(0.06) benign(0.268) TCGA-95-7039-01 8 121021350 121021350 C T DEPTOR Missense_Mutation p.P360L 0.43 deleterious(0) benign(0.32) TCGA-95-7039-01 8 121239003 121239003 G T COL14A1 Nonsense_Mutation p.E668* 0.18 TCGA-95-7039-01 8 139144721 139144721 G T FAM135B 3'UTR 0.69 TCGA-95-7039-01 8 13947852 13947852 C A SGCZ 3'UTR 0.19 TCGA-95-7039-01 8 143999226 143999226 C T CYP11B2 Missense_Mutation p.V11M 0.47 tolerated(0.37) benign(0.001) TCGA-95-7039-01 8 144662227 144662227 C A EEF1D Silent p.V620V 0.38 TCGA-95-7039-01 8 145622131 145622131 T C CPSF1 Missense_Mutation p.Q869R 0.50 tolerated(0.22) benign(0.006) TCGA-95-7039-01 8 1497162 1497162 G T DLGAP2 Silent p.A101A 0.31 TCGA-95-7039-01 8 2077162 2077162 C G MYOM2 Missense_Mutation p.R1248G 0.30 deleterious(0.01) benign(0.2) TCGA-95-7039-01 8 21978634 21978634 A G HR Silent p.L771L 0.19 TCGA-95-7039-01 8 22570953 22570953 G T PEBP4 Missense_Mutation p.T205N 0.37 tolerated_low_confidence(0.52) benign(0.001) TCGA-95-7039-01 8 27634552 27634552 G T ESCO2 Missense_Mutation p.D243Y 0.11 deleterious(0.01) possibly_damaging(0.646) TCGA-95-7039-01 8 2857553 2857553 G C CSMD1 Missense_Mutation p.F2710L 0.21 possibly_damaging(0.452) TCGA-95-7039-01 8 2875998 2875998 C A CSMD1 Splice_Site p.X2677_splice 0.23 TCGA-95-7039-01 8 2949144 2949144 C - CSMD1 Frame_Shift_Del p.N2394Ifs*41 0.22 TCGA-95-7039-01 8 36641927 36641927 A T KCNU1 5'UTR 0.28 TCGA-95-7039-01 8 37556059 37556059 C G ZNF703 Missense_Mutation p.P547R 0.21 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 8 38369939 38369939 C A C8orf86 Missense_Mutation p.G213V 0.25 tolerated_low_confidence(0.16) benign(0.105) TCGA-95-7039-01 8 39044509 39044509 G T ADAM32 Missense_Mutation p.D333Y 0.24 deleterious(0) probably_damaging(0.997) TCGA-95-7039-01 8 42294897 42294897 C A SLC20A2 Missense_Mutation p.R378L 0.27 tolerated(0.17) benign(0.318) TCGA-95-7039-01 8 48614372 48614372 C T SPIDR Silent p.P621P 0.20 TCGA-95-7039-01 8 49833892 49833892 C G SNAI2 5'UTR 0.11 TCGA-95-7039-01 8 53555277 53555277 T C RB1CC1 Silent p.Q1361Q 0.39 TCGA-95-7039-01 8 61766937 61766937 G A CHD7 Missense_Mutation p.R2264K 0.09 benign(0.01) TCGA-95-7039-01 8 67578701 67578701 C A VCPIP1 Missense_Mutation p.D165Y 0.22 deleterious(0) probably_damaging(0.984) TCGA-95-7039-01 8 70981464 70981464 G T PRDM14 Missense_Mutation p.P211H 0.55 tolerated(0.25) possibly_damaging(0.754) TCGA-95-7039-01 8 75737725 75737725 G C PI15 Missense_Mutation p.V81L 0.17 deleterious(0) probably_damaging(0.994) TCGA-95-7039-01 8 77617528 77617528 C T ZFHX4 Missense_Mutation p.P402L 0.48 possibly_damaging(0.851) TCGA-95-7039-01 8 77895554 77895554 T G PEX2 Silent p.V287V 0.19 TCGA-95-7039-01 8 77895675 77895675 C A PEX2 Missense_Mutation p.C247F 0.13 deleterious(0) probably_damaging(1) TCGA-95-7039-01 8 87076652 87076652 G C PSKH2 Missense_Mutation p.Q132E 0.30 deleterious(0.01) benign(0.027) TCGA-95-7039-01 8 88885086 88885086 G T DCAF4L2 Missense_Mutation p.L372I 0.18 tolerated(0.09) benign(0.391) TCGA-95-7039-01 8 89068387 89068387 C A MMP16 Missense_Mutation p.V448F 0.22 tolerated(0.07) probably_damaging(0.931) TCGA-95-7039-01 8 89086929 89086929 C G MMP16 Missense_Mutation p.G376R 0.16 deleterious(0) probably_damaging(0.995) TCGA-95-7039-01 8 92375762 92375762 A T SLC26A7 Missense_Mutation p.D495V 0.22 deleterious(0.03) benign(0.376) TCGA-95-7039-01 8 94746596 94746596 C A RBM12B Missense_Mutation p.E681D 0.38 tolerated_low_confidence(0.2) benign(0.205) TCGA-95-7039-01 8 95792642 95792642 A T DPY19L4 Missense_Mutation p.E544V 0.24 tolerated(0.1) possibly_damaging(0.479) TCGA-95-7039-01 8 97307406 97307406 G T PTDSS1 Missense_Mutation p.W174C 0.12 tolerated(0.19) probably_damaging(0.935) TCGA-95-7039-01 8 97605770 97605770 A T SDC2 Silent p.S41S 0.21 TCGA-95-7039-01 9 104133520 104133520 C A BAAT Missense_Mutation p.G56V 0.24 deleterious(0) probably_damaging(1) TCGA-95-7039-01 9 104448970 104448970 G T GRIN3A Silent p.T404T 0.39 TCGA-95-7039-01 9 1057240 1057240 G A DMRT2 Silent p.R551R 0.30 TCGA-95-7039-01 9 113169173 113169173 C A SVEP1 Nonsense_Mutation p.E2903* 0.20 TCGA-95-7039-01 9 113217973 113217973 A G SVEP1 Silent p.C1228C 0.33 TCGA-95-7039-01 9 116132008 116132008 C T BSPRY Silent p.G265G 0.26 TCGA-95-7039-01 9 124976256 124976256 G T LHX6 Silent p.I292I 0.22 TCGA-95-7039-01 9 132569606 132569606 G C TOR1B Missense_Mutation p.G202A 0.26 deleterious(0) benign(0.314) TCGA-95-7039-01 9 135357749 135357749 C T C9orf171 Missense_Mutation p.A83V 0.33 tolerated_low_confidence(0.08) benign(0.023) TCGA-95-7039-01 9 135739083 135739083 G C AK8 Missense_Mutation p.T101S 0.21 tolerated(0.7) benign(0.004) TCGA-95-7039-01 9 136501680 136501680 T C DBH Missense_Mutation p.W63R 0.17 deleterious(0) probably_damaging(1) TCGA-95-7039-01 9 137660255 137660255 G T COL5A1 Splice_Site p.X745_splice 0.34 TCGA-95-7039-01 9 137779182 137779182 C G FCN2 Missense_Mutation p.A288G 0.27 tolerated(0.11) benign(0.036) TCGA-95-7039-01 9 139740876 139740876 C - C9orf172 Frame_Shift_Del p.R671Gfs*180 0.27 TCGA-95-7039-01 9 139911094 139911094 C A ABCA2 Missense_Mutation p.W952L 0.25 tolerated(0.32) benign(0.011) TCGA-95-7039-01 9 140059526 140059526 G C GRIN1 Intron 0.29 TCGA-95-7039-01 9 140671225 140671225 G A EHMT1 Silent p.S649S 0.16 TCGA-95-7039-01 9 15971664 15971664 G A CCDC171 Missense_Mutation p.D1271N 0.13 tolerated_low_confidence(0.11) benign(0.007) TCGA-95-7039-01 9 21201913 21201913 G A IFNA7 Silent p.I84I 0.13 TCGA-95-7039-01 9 27524686 27524686 C A IFNK Missense_Mutation p.L118I 0.11 deleterious(0.01) probably_damaging(0.992) TCGA-95-7039-01 9 27548256 27548256 C A C9orf72 Missense_Mutation p.R475L 0.50 deleterious_low_confidence(0.01) benign(0.171) TCGA-95-7039-01 9 27949889 27949889 G T LINGO2 Missense_Mutation p.L261M 0.12 deleterious(0.01) probably_damaging(1) TCGA-95-7039-01 9 28888889 28888889 C A MIR873 RNA 0.47 TCGA-95-7039-01 9 33364755 33364755 G A NFX1 Missense_Mutation p.V1008M 0.14 deleterious(0) probably_damaging(0.995) TCGA-95-7039-01 9 35065277 35065277 G A VCP Missense_Mutation p.H183Y 0.30 tolerated(0.6) benign(0.012) TCGA-95-7039-01 9 36117143 36117143 G T RECK Missense_Mutation p.G741V 0.20 deleterious(0) probably_damaging(0.981) TCGA-95-7039-01 9 36633107 36633107 A T MELK Silent p.P248P 0.29 TCGA-95-7039-01 9 43737469 43737469 C A CNTNAP3B Missense_Mutation p.F113L 0.19 deleterious(0.01) possibly_damaging(0.737) TCGA-95-7039-01 9 5233662 5233662 T C INSL4 Missense_Mutation p.S69P 0.40 tolerated(0.34) benign(0.013) TCGA-95-7039-01 9 72046228 72046228 C T APBA1 3'UTR 0.17 TCGA-95-7039-01 9 73255569 73255569 A T TRPM3 Missense_Mutation p.N451K 0.20 tolerated(0.05) probably_damaging(0.921) TCGA-95-7039-01 9 73442800 73442800 T C TRPM3 Silent p.Q312Q 0.21 TCGA-95-7039-01 9 77442615 77442615 T A TRPM6 Intron 0.26 TCGA-95-7039-01 9 79325548 79325548 T G PRUNE2 Missense_Mutation p.N548H 0.42 deleterious(0) possibly_damaging(0.867) TCGA-95-7039-01 9 79635203 79635203 G C FOXB2 Silent p.P211P 0.33 TCGA-95-7039-01 9 84531715 84531715 C T SPATA31D5P RNA 0.18 TCGA-95-7039-01 9 84607054 84607054 A C SPATA31D1 Missense_Mutation p.S557R 0.27 tolerated(0.42) benign(0.133) TCGA-95-7039-01 9 8521291 8521291 T C PTPRD Missense_Mutation p.Q316R 0.19 deleterious(0.03) probably_damaging(0.972) TCGA-95-7039-01 9 90500556 90500556 G A SPATA31E1 Missense_Mutation p.R385Q 0.17 tolerated(0.58) benign(0.41) TCGA-95-7039-01 9 95608877 95608877 T C ZNF484 Missense_Mutation p.Q733R 0.23 tolerated(0.31) probably_damaging(0.99) TCGA-95-7039-01 X 10176261 10176261 C G CLCN4 Silent p.V340V 0.43 TCGA-95-7039-01 X 107929351 107929351 G T COL4A5 Missense_Mutation p.G1436V 0.27 probably_damaging(1) TCGA-95-7039-01 X 107976275 107976275 G A IRS4 Silent p.V1100V 0.11 TCGA-95-7039-01 X 107976299 107976299 G A IRS4 Silent p.F1092F 0.10 TCGA-95-7039-01 X 107976307 107976307 G A IRS4 Nonsense_Mutation p.Q1090* 0.09 TCGA-95-7039-01 X 111698695 111698695 C A ZCCHC16 Missense_Mutation p.P247T 0.36 tolerated(0.12) benign(0.027) TCGA-95-7039-01 X 113965977 113965977 C A HTR2C Missense_Mutation p.L104I 0.51 tolerated(0.57) benign(0.032) TCGA-95-7039-01 X 135426568 135426568 A G GPR112 Missense_Mutation p.T235A 0.25 tolerated(0.09) benign(0.197) TCGA-95-7039-01 X 137717645 137717645 C A FGF13 Missense_Mutation p.A202S 0.38 tolerated(0.46) benign(0.338) TCGA-95-7039-01 X 138684576 138684576 C A MCF2 Missense_Mutation p.A685S 0.27 tolerated(0.11) benign(0.062) TCGA-95-7039-01 X 139047602 139047602 C A CXorf66 Missense_Mutation p.M18I 0.25 tolerated(0.09) benign(0) TCGA-95-7039-01 X 139866610 139866610 C T CDR1 5'UTR 0.43 TCGA-95-7039-01 X 142967330 142967330 C A UBE2NL Nonsense_Mutation p.S43* 0.44 TCGA-95-7039-01 X 150773156 150773156 T A PASD1 Missense_Mutation p.W23R 0.44 tolerated(0.08) benign(0.073) TCGA-95-7039-01 X 152845758 152845758 A C ATP2B3 3'UTR 0.33 TCGA-95-7039-01 X 153133866 153133866 C A L1CAM Missense_Mutation p.G532C 0.36 deleterious(0) probably_damaging(1) TCGA-95-7039-01 X 153694733 153694733 C G PLXNA3 Missense_Mutation p.D938E 0.30 tolerated(0.88) benign(0.001) TCGA-95-7039-01 X 154132669 154132669 T C F8 Missense_Mutation p.K1906R 0.42 deleterious(0.02) probably_damaging(0.995) TCGA-95-7039-01 X 16170424 16170424 G T GRPR Missense_Mutation p.G271C 0.51 tolerated(0.09) benign(0.024) TCGA-95-7039-01 X 18276333 18276333 G A SCML2 Silent p.G368G 0.20 TCGA-95-7039-01 X 26157881 26157881 C A MAGEB18 Missense_Mutation p.P260H 0.25 deleterious(0) probably_damaging(0.992) TCGA-95-7039-01 X 30261205 30261205 G A MAGEB4 Missense_Mutation p.R318Q 0.41 tolerated(0.12) unknown(0) TCGA-95-7039-01 X 3241306 3241306 G A MXRA5 Missense_Mutation p.T807I 0.33 deleterious(0) benign(0.137) TCGA-95-7039-01 X 34961513 34961513 C A FAM47B Missense_Mutation p.P189T 0.32 tolerated(0.28) benign(0.407) TCGA-95-7039-01 X 34962866 34962866 G T FAM47B Missense_Mutation p.D640Y 0.52 deleterious(0) possibly_damaging(0.814) TCGA-95-7039-01 X 35971832 35971832 C G CXorf22 Missense_Mutation p.I390M 0.28 tolerated(0.15) benign(0.067) TCGA-95-7039-01 X 36007542 36007542 G T CXorf22 Silent p.A940A 0.35 TCGA-95-7039-01 X 47269737 47269737 C A ZNF157 Missense_Mutation p.D45E 0.35 deleterious(0.02) benign(0.308) TCGA-95-7039-01 X 47308150 47308150 G C ZNF41 Nonsense_Mutation p.S340* 0.30 TCGA-95-7039-01 X 47424443 47424443 T C ARAF Silent p.H121H 0.24 TCGA-95-7039-01 X 48772296 48772296 C - PIM2 Splice_Site p.X199_splice 0.21 TCGA-95-7039-01 X 49048097 49048097 C A SYP Missense_Mutation p.G247W 0.35 tolerated(0.18) unknown(0) TCGA-95-7039-01 X 49689888 49689888 G T CLCN5 5'UTR 0.27 TCGA-95-7039-01 X 53245133 53245133 G - KDM5C Frame_Shift_Del p.T270Qfs*2 0.14 TCGA-95-7039-01 X 54161386 54161386 G A FAM120C Silent p.S498S 0.27 TCGA-95-7039-01 X 54956046 54956047 - A TRO Frame_Shift_Ins p.S964Kfs*35 0.13 TCGA-95-7039-01 X 55052265 55052265 T G ALAS2 Missense_Mutation p.K57Q 0.24 tolerated(0.47) possibly_damaging(0.493) TCGA-95-7039-01 X 73064668 73064668 G T XIST RNA 0.43 TCGA-95-7039-01 X 73641730 73641730 C A SLC16A2 Silent p.R86R 0.42 TCGA-95-7039-01 X 73961331 73961331 C T KIAA2022 Missense_Mutation p.D1021N 0.27 deleterious(0) possibly_damaging(0.864) TCGA-95-7039-01 X 74644564 74644564 G T ZDHHC15 Missense_Mutation p.A220D 0.44 deleterious(0) probably_damaging(0.952) TCGA-95-7039-01 X 76939494 76939494 T A ATRX Silent p.R418R 0.40 TCGA-95-7039-01 X 77913726 77913726 G T ZCCHC5 Silent p.L64L 0.27 TCGA-95-7039-01 X 79999660 79999660 C A BRWD3 Missense_Mutation p.M228I 0.35 tolerated(0.37) benign(0.068) TCGA-95-7039-01 X 84349161 84349161 C A SATL1 Missense_Mutation p.D617Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-95-7039-01 X 84520185 84520185 T A ZNF711 Silent p.L280L 0.15 TCGA-95-7039-01 X 84585958 84585958 C A POF1B Missense_Mutation p.G284V 0.13 deleterious(0) probably_damaging(1) TCGA-95-7039-01 X 86880684 86880684 G A KLHL4 Missense_Mutation p.M404I 0.19 tolerated(0.1) benign(0.132) TCGA-95-7039-01 X 89177226 89177226 G T TGIF2LX Nonsense_Mutation p.E48* 0.10 TCGA-95-7039-01 X 91873836 91873836 G T PCDH11X Missense_Mutation p.S1314I 0.13 deleterious_low_confidence(0) possibly_damaging(0.451) TCGA-95-7039-01 X 99657667 99657667 C - PCDH19 Frame_Shift_Del p.G824Afs*10 0.43 TCGA-95-7043-01 10 101147614 101147614 G C CNNM1 Missense_Mutation p.C793S 0.30 tolerated(1) benign(0.006) TCGA-95-7043-01 10 102566266 102566266 C G PAX2 Silent p.T255T 0.32 TCGA-95-7043-01 10 105158271 105158271 G T PDCD11 Missense_Mutation p.D30Y 0.33 deleterious(0) probably_damaging(0.954) TCGA-95-7043-01 10 105209359 105209359 G T CALHM2 Missense_Mutation p.P114T 0.53 deleterious(0) probably_damaging(1) TCGA-95-7043-01 10 105218463 105218463 G T CALHM1 Missense_Mutation p.Q16K 0.32 deleterious(0.01) probably_damaging(0.979) TCGA-95-7043-01 10 105830296 105830296 G T COL17A1 Silent p.L165L 0.27 TCGA-95-7043-01 10 106802834 106802835 GG T SORCS3 Frame_Shift_Del p.G326* 0.48 TCGA-95-7043-01 10 106802854 106802854 G T SORCS3 Missense_Mutation p.M332I 0.47 tolerated(0.48) benign(0) TCGA-95-7043-01 10 107022154 107022154 C G SORCS3 Nonsense_Mutation p.S1170* 0.54 TCGA-95-7043-01 10 108466362 108466362 C A SORCS1 Missense_Mutation p.V392L 0.24 deleterious(0.03) probably_damaging(0.991) TCGA-95-7043-01 10 108923745 108923745 C A SORCS1 Missense_Mutation p.W180C 0.30 deleterious(0) probably_damaging(0.979) TCGA-95-7043-01 10 115366008 115366008 G A NRAP Missense_Mutation p.H1246Y 0.56 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 10 117185799 117185799 A G ATRNL1 Silent p.R1103R 0.34 TCGA-95-7043-01 10 117278785 117278785 C A ATRNL1 Missense_Mutation p.Q1223K 0.35 deleterious(0.01) possibly_damaging(0.762) TCGA-95-7043-01 10 117486824 117486824 G A ATRNL1 Missense_Mutation p.V1288M 0.19 tolerated(0.26) possibly_damaging(0.46) TCGA-95-7043-01 10 117884934 117884934 G A GFRA1 Missense_Mutation p.R190C 0.19 deleterious(0) probably_damaging(0.987) TCGA-95-7043-01 10 118354355 118354355 C A PNLIPRP1 Silent p.A148A 0.32 TCGA-95-7043-01 10 118385498 118385498 C A PNLIPRP2 Missense_Mutation p.N82K 0.20 deleterious(0.02) possibly_damaging(0.805) TCGA-95-7043-01 10 122280544 122280544 T A PPAPDC1A Missense_Mutation p.C128S 0.48 deleterious(0) probably_damaging(1) TCGA-95-7043-01 10 124097569 124097569 T G BTBD16 Missense_Mutation p.V497G 0.40 deleterious(0) benign(0.318) TCGA-95-7043-01 10 124459225 124459225 C A C10orf120 Nonsense_Mutation p.E28* 0.46 TCGA-95-7043-01 10 135053621 135053621 G T VENTX Missense_Mutation p.M196I 0.77 tolerated(0.41) benign(0.002) TCGA-95-7043-01 10 15573122 15573122 G A ITGA8 Missense_Mutation p.S970F 0.27 deleterious(0.02) possibly_damaging(0.863) TCGA-95-7043-01 10 17276749 17276749 C T VIM Nonsense_Mutation p.Q314* 0.66 TCGA-95-7043-01 10 20506453 20506453 T C PLXDC2 Silent p.T407T 0.73 TCGA-95-7043-01 10 20534321 20534321 G T PLXDC2 Missense_Mutation p.A454S 0.40 tolerated(0.2) benign(0.013) TCGA-95-7043-01 10 25313812 25313812 A T THNSL1 Nonsense_Mutation p.R554* 0.28 TCGA-95-7043-01 10 25840014 25840014 G T GPR158 Missense_Mutation p.R505M 0.28 deleterious(0.02) probably_damaging(1) TCGA-95-7043-01 10 25887098 25887098 C T GPR158 Missense_Mutation p.T848I 0.54 tolerated(0.11) benign(0.001) TCGA-95-7043-01 10 26446279 26446279 A T MYO3A Missense_Mutation p.Q945L 0.62 tolerated(0.06) benign(0.056) TCGA-95-7043-01 10 48371143 48371143 G - ZNF488 Frame_Shift_Del p.G205Vfs*82 0.21 TCGA-95-7043-01 10 48388110 48388110 G C RBP3 Missense_Mutation p.A923G 0.54 deleterious(0) benign(0.364) TCGA-95-7043-01 10 48388252 48388252 C G RBP3 Missense_Mutation p.A876P 0.42 deleterious(0.01) probably_damaging(0.936) TCGA-95-7043-01 10 50964945 50964945 G T OGDHL Silent p.G84G 0.45 TCGA-95-7043-01 10 55566681 55566681 G A PCDH15 Silent p.S1568S 0.59 TCGA-95-7043-01 10 58117852 58117852 C A ZWINT 3'UTR 0.21 TCGA-95-7043-01 10 69881591 69881591 C A MYPN Silent p.P132P 0.60 TCGA-95-7043-01 10 71048483 71048483 C A HK1 5'Flank 0.37 TCGA-95-7043-01 10 71647246 71647246 C G COL13A1 Missense_Mutation p.P174R 0.47 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 10 71690197 71690197 C A COL13A1 Silent p.P513P 0.55 TCGA-95-7043-01 10 72360455 72360455 C A PRF1 Silent p.R68R 0.52 TCGA-95-7043-01 10 72493775 72493775 G T ADAMTS14 Missense_Mutation p.R451L 0.46 deleterious(0.04) possibly_damaging(0.613) TCGA-95-7043-01 10 75407866 75407866 G T SYNPO2L Missense_Mutation p.P515H 0.56 deleterious(0.01) benign(0.376) TCGA-95-7043-01 10 7621837 7621837 G A ITIH5 Silent p.I433I 0.62 TCGA-95-7043-01 10 8111517 8111517 G C GATA3 Missense_Mutation p.D336H 0.59 deleterious(0) possibly_damaging(0.644) TCGA-95-7043-01 10 82126836 82126836 G C DYDC2 3'UTR 0.36 TCGA-95-7043-01 10 85984321 85984321 G A LRIT2 Silent p.L220L 0.34 TCGA-95-7043-01 10 85992169 85992169 G T LRIT1 Silent p.L462L 0.20 TCGA-95-7043-01 10 96030305 96030305 G A PLCE1 Silent p.S1484S 0.24 TCGA-95-7043-01 10 96306165 96306165 G T HELLS Silent p.L21L 0.61 TCGA-95-7043-01 10 96350194 96350194 A G HELLS Missense_Mutation p.T505A 0.62 tolerated(0.35) benign(0.024) TCGA-95-7043-01 10 98098044 98098044 G T DNTT 3'UTR 0.27 TCGA-95-7043-01 10 98743139 98743139 G C C10orf12 Missense_Mutation p.Q664H 0.52 deleterious(0) probably_damaging(0.938) TCGA-95-7043-01 10 99531108 99531108 G A SFRP5 Silent p.L161L 0.54 TCGA-95-7043-01 11 102239280 102239280 G T BIRC2 Splice_Site p.X456_splice 0.59 TCGA-95-7043-01 11 102398608 102398608 C A MMP7 Missense_Mutation p.G72V 0.49 deleterious(0) probably_damaging(1) TCGA-95-7043-01 11 102593335 102593335 C A MMP8 Missense_Mutation p.V58L 0.55 tolerated(1) benign(0.003) TCGA-95-7043-01 11 103124057 103124057 C A DYNC2H1 Nonsense_Mutation p.Y3369* 0.43 TCGA-95-7043-01 11 103907855 103907855 C A DDI1 Missense_Mutation p.P102H 0.18 deleterious(0) probably_damaging(0.98) TCGA-95-7043-01 11 105948418 105948418 G T AASDHPPT 5'UTR 0.19 TCGA-95-7043-01 11 111414669 111414669 G T LAYN Missense_Mutation p.G44V 0.15 deleterious(0) probably_damaging(0.996) TCGA-95-7043-01 11 113286302 113286302 G T DRD2 Silent p.A188A 0.47 TCGA-95-7043-01 11 113287642 113287642 C G DRD2 Missense_Mutation p.V159L 0.12 deleterious(0.03) probably_damaging(0.975) TCGA-95-7043-01 11 113857438 113857438 A T HTR3A Missense_Mutation p.T308S 0.49 deleterious(0) probably_damaging(0.99) TCGA-95-7043-01 11 113857618 113857618 G A HTR3A Missense_Mutation p.V368M 0.47 deleterious(0.01) probably_damaging(0.972) TCGA-95-7043-01 11 113857766 113857766 C T HTR3A Missense_Mutation p.S417L 0.30 deleterious(0.03) benign(0.373) TCGA-95-7043-01 11 114401102 114401103 - A NXPE1 Frame_Shift_Ins p.V68Cfs*2 0.17 TCGA-95-7043-01 11 116661628 116661628 C T APOA5 Missense_Mutation p.R106H 0.45 deleterious(0.01) probably_damaging(0.992) TCGA-95-7043-01 11 117332278 117332278 C A DSCAML1 Silent p.L1160L 0.60 TCGA-95-7043-01 11 117774772 117774772 C A TMPRSS13 Missense_Mutation p.D476Y 0.12 deleterious(0) probably_damaging(0.977) TCGA-95-7043-01 11 118376564 118376564 A T KMT2A Silent p.T3319T 0.55 TCGA-95-7043-01 11 118498106 118498106 G T PHLDB1 Silent p.L189L 0.37 TCGA-95-7043-01 11 118650398 118650398 T C DDX6 Silent p.K104K 0.53 TCGA-95-7043-01 11 118773205 118773205 T A BCL9L Missense_Mutation p.D416V 0.45 probably_damaging(0.999) TCGA-95-7043-01 11 118982044 118982044 A T C2CD2L Silent p.L290L 0.20 TCGA-95-7043-01 11 119998114 119998114 T G TRIM29 Missense_Mutation p.K355T 0.16 tolerated(0.27) possibly_damaging(0.694) TCGA-95-7043-01 11 120833279 120833279 G T GRIK4 Missense_Mutation p.A719S 0.60 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 11 122669678 122669678 T A UBASH3B Silent p.I462I 0.51 TCGA-95-7043-01 11 12278459 12278459 G T MICAL2 Missense_Mutation p.R1028L 0.53 deleterious(0) benign(0.44) TCGA-95-7043-01 11 123847751 123847751 G T OR10S1 Missense_Mutation p.S216R 0.36 deleterious(0) benign(0.082) TCGA-95-7043-01 11 123908878 123908878 C G OR10G7 Silent p.T277T 0.31 TCGA-95-7043-01 11 124179963 124179963 G T OR8D1 Silent p.R234R 0.59 TCGA-95-7043-01 11 125325984 125325984 C A FEZ1 Missense_Mutation p.G229V 0.53 tolerated(1) benign(0.003) TCGA-95-7043-01 11 1270603 1270603 G A MUC5B Missense_Mutation p.V4165I 0.57 unknown(0) TCGA-95-7043-01 11 131781346 131781346 C A NTM 5'Flank 0.68 TCGA-95-7043-01 11 133715043 133715043 G T SPATA19 Missense_Mutation p.H41N 0.48 deleterious(0.01) possibly_damaging(0.607) TCGA-95-7043-01 11 17438477 17438477 C T ABCC8 Missense_Mutation p.S752N 0.31 tolerated(0.17) benign(0) TCGA-95-7043-01 11 2181150 2181150 G C INS Missense_Mutation p.R89G 0.93 deleterious(0) probably_damaging(1) TCGA-95-7043-01 11 22271871 22271871 G T ANO5 Missense_Mutation p.A323S 0.57 tolerated(0.45) benign(0.088) TCGA-95-7043-01 11 22294524 22294524 G A ANO5 Missense_Mutation p.V742I 0.33 deleterious(0.02) benign(0.092) TCGA-95-7043-01 11 27016337 27016337 C A FIBIN Silent p.G88G 0.48 TCGA-95-7043-01 11 31531320 31531320 G T ELP4 5'UTR 0.54 TCGA-95-7043-01 11 32636042 32636042 G T CCDC73 Missense_Mutation p.P608T 0.50 tolerated(0.32) benign(0.094) TCGA-95-7043-01 11 33358645 33358645 G T HIPK3 Missense_Mutation p.G416C 0.34 deleterious(0) probably_damaging(1) TCGA-95-7043-01 11 33596419 33596419 C A KIAA1549L Missense_Mutation p.P1171T 0.49 deleterious(0) probably_damaging(0.993) TCGA-95-7043-01 11 35227679 35227679 C A CD44 Missense_Mutation p.H435N 0.36 deleterious(0) benign(0.206) TCGA-95-7043-01 11 36594998 36594998 A T RAG1 Missense_Mutation p.E48D 0.26 tolerated_low_confidence(0.39) benign(0) TCGA-95-7043-01 11 36595593 36595593 C T RAG1 Missense_Mutation p.R247C 0.30 deleterious_low_confidence(0.03) benign(0) TCGA-95-7043-01 11 4045158 4045159 - T STIM1 Frame_Shift_Ins p.G110Wfs*2 0.23 TCGA-95-7043-01 11 4156359 4156359 G T RRM1 Silent p.V683V 0.39 TCGA-95-7043-01 11 46747442 46747442 G T F2 Missense_Mutation p.R198L 0.44 deleterious(0.05) benign(0.016) TCGA-95-7043-01 11 46897219 46897219 G A LRP4 Missense_Mutation p.A1238V 0.37 tolerated(0.11) benign(0.111) TCGA-95-7043-01 11 4703108 4703108 G T OR51E2 Silent p.I278I 0.34 TCGA-95-7043-01 11 48328183 48328183 C T OR4S1 Missense_Mutation p.R137W 0.53 tolerated(0.05) benign(0.003) TCGA-95-7043-01 11 4944805 4944805 G T OR51G1 Silent p.I255I 0.27 TCGA-95-7043-01 11 51411794 51411794 C A OR4A5 Missense_Mutation p.G201V 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.89) TCGA-95-7043-01 11 5142772 5142772 G T OR52A4 RNA 0.40 TCGA-95-7043-01 11 5269533 5269533 G T HBG1 3'UTR 0.39 TCGA-95-7043-01 11 5444288 5444288 C T OR51Q1 Silent p.P286P 0.30 TCGA-95-7043-01 11 5530799 5530799 G A UBQLN3 5'UTR 0.31 TCGA-95-7043-01 11 55321938 55321938 G T OR4C15 Missense_Mutation p.L52F 0.31 tolerated_low_confidence(0.09) benign(0.262) TCGA-95-7043-01 11 55432871 55432871 C A OR4C6 Missense_Mutation p.P77T 0.31 deleterious_low_confidence(0) possibly_damaging(0.856) TCGA-95-7043-01 11 55433099 55433099 C A OR4C6 Missense_Mutation p.H153N 0.44 deleterious_low_confidence(0) probably_damaging(1) TCGA-95-7043-01 11 55563060 55563060 T A OR5D14 Missense_Mutation p.M10K 0.45 tolerated(0.14) benign(0.001) TCGA-95-7043-01 11 55563061 55563061 G T OR5D14 Missense_Mutation p.M10I 0.46 tolerated(0.21) benign(0) TCGA-95-7043-01 11 55563196 55563196 C T OR5D14 Silent p.P55P 0.25 TCGA-95-7043-01 11 55594843 55594843 A G OR5L2 Missense_Mutation p.Q50R 0.34 tolerated(1) benign(0.009) TCGA-95-7043-01 11 55735035 55735035 C G OR10AG1 Nonstop_Mutation p.*302Sext*9 0.36 TCGA-95-7043-01 11 56020379 56020379 C A OR5T3 Missense_Mutation p.S235Y 0.32 tolerated(0.46) benign(0.088) TCGA-95-7043-01 11 56020487 56020487 G C OR5T3 Missense_Mutation p.C271S 0.57 deleterious(0) probably_damaging(0.99) TCGA-95-7043-01 11 56230127 56230127 C A OR5M9 Missense_Mutation p.G251W 0.57 deleterious(0) probably_damaging(0.998) TCGA-95-7043-01 11 56230128 56230128 A T OR5M9 Nonsense_Mutation p.Y250* 0.59 TCGA-95-7043-01 11 56230340 56230340 G T OR5M9 Missense_Mutation p.P180T 0.59 deleterious(0.02) possibly_damaging(0.673) TCGA-95-7043-01 11 56468109 56468109 G A OR9G1 Silent p.V82V 0.16 TCGA-95-7043-01 11 57259335 57259335 C T SLC43A1 Missense_Mutation p.R291K 0.47 tolerated(1) benign(0.002) TCGA-95-7043-01 11 57958752 57958752 A T OR9Q2 Missense_Mutation p.T264S 0.35 tolerated(1) benign(0.002) TCGA-95-7043-01 11 57983153 57983153 G C OR1S1 Missense_Mutation p.A313P 0.49 deleterious(0) probably_damaging(0.961) TCGA-95-7043-01 11 58034886 58034886 G C OR10W1 Missense_Mutation p.Q149E 0.33 tolerated(0.34) possibly_damaging(0.882) TCGA-95-7043-01 11 58384721 58384721 A G ZFP91 Missense_Mutation p.M419V 0.43 deleterious(0) benign(0.212) TCGA-95-7043-01 11 59283051 59283051 G C OR4D9 Missense_Mutation p.L222F 0.56 deleterious(0.01) benign(0.309) TCGA-95-7043-01 11 59480878 59480878 T A OR10V1 Silent p.V147V 0.49 TCGA-95-7043-01 11 59611418 59611418 C A GIF Missense_Mutation p.A64S 0.36 deleterious(0.01) possibly_damaging(0.625) TCGA-95-7043-01 11 59834453 59834453 C T MS4A3 Silent p.A127A 0.40 TCGA-95-7043-01 11 60157001 60157001 C A MS4A7 Missense_Mutation p.P160T 0.22 tolerated(0.12) probably_damaging(0.981) TCGA-95-7043-01 11 60777114 60777114 G A CD6 Silent p.G284G 0.20 TCGA-95-7043-01 11 61675767 61675767 G C RAB3IL1 Missense_Mutation p.P8R 0.33 deleterious_low_confidence(0.01) benign(0.005) TCGA-95-7043-01 11 62156712 62156712 C T ASRGL1 Missense_Mutation p.S200L 0.51 deleterious(0) possibly_damaging(0.864) TCGA-95-7043-01 11 62297223 62297224 - A AHNAK Frame_Shift_Ins p.E1556* 0.22 TCGA-95-7043-01 11 6260393 6260393 A T CNGA4 5'UTR 0.47 TCGA-95-7043-01 11 62931309 62931309 C A SLC22A25 Missense_Mutation p.S544I 0.33 deleterious(0.02) benign(0.208) TCGA-95-7043-01 11 64032518 64032518 C T PLCB3 Silent p.S916S 0.60 TCGA-95-7043-01 11 64390478 64390478 T A NRXN2 Missense_Mutation p.Q1307L 0.73 tolerated(0.11) benign(0.22) TCGA-95-7043-01 11 64607593 64607593 T A CDC42BPG Missense_Mutation p.R194W 0.50 deleterious(0) probably_damaging(0.998) TCGA-95-7043-01 11 64795066 64795066 G T SNX15 Missense_Mutation p.R19S 0.61 deleterious(0) probably_damaging(0.933) TCGA-95-7043-01 11 65273716 65273717 - G MALAT1 RNA 0.27 TCGA-95-7043-01 11 6541202 6541202 G A DNHD1 Missense_Mutation p.R552K 0.29 possibly_damaging(0.515) TCGA-95-7043-01 11 66190227 66190227 C A NPAS4 Silent p.G171G 0.38 TCGA-95-7043-01 11 66190315 66190315 C A NPAS4 Missense_Mutation p.P201T 0.31 tolerated(0.39) benign(0.001) TCGA-95-7043-01 11 66192356 66192356 G A NPAS4 Silent p.L665L 0.55 TCGA-95-7043-01 11 6654134 6654134 C G DCHS1 Missense_Mutation p.G870A 0.24 deleterious(0.02) probably_damaging(1) TCGA-95-7043-01 11 6654222 6654222 C T DCHS1 Missense_Mutation p.A841T 0.41 tolerated(0.38) benign(0.054) TCGA-95-7043-01 11 66617321 66617321 C T PC Missense_Mutation p.D970N 0.37 tolerated(0.23) benign(0.054) TCGA-95-7043-01 11 67431999 67431999 C A ALDH3B2 Missense_Mutation p.E247D 0.41 tolerated(1) benign(0.042) TCGA-95-7043-01 11 68529082 68529082 C A CPT1A Missense_Mutation p.G650V 0.63 deleterious(0) probably_damaging(1) TCGA-95-7043-01 11 6867387 6867387 T A OR10A5 Silent p.T158T 0.38 TCGA-95-7043-01 11 72409058 72409058 C A ARAP1 Missense_Mutation p.A879S 0.68 tolerated(0.96) benign(0.01) TCGA-95-7043-01 11 72945641 72945641 G A P2RY2 Missense_Mutation p.R146Q 0.27 tolerated(0.28) benign(0.025) TCGA-95-7043-01 11 74914215 74914215 C A SLCO2B1 Intron 0.36 TCGA-95-7043-01 11 74983955 74983955 C A ARRB1 Missense_Mutation p.V328L 0.66 tolerated(0.13) possibly_damaging(0.521) TCGA-95-7043-01 11 82693371 82693371 C A RAB30 Nonsense_Mutation p.E150* 0.58 TCGA-95-7043-01 11 82705151 82705151 G A RAB30 Missense_Mutation p.P36L 0.24 tolerated(0.06) probably_damaging(0.911) TCGA-95-7043-01 11 83497829 83497829 C A DLG2 Missense_Mutation p.G577C 0.65 deleterious(0) probably_damaging(0.979) TCGA-95-7043-01 11 85725988 85725988 T C PICALM Silent p.R157R 0.21 TCGA-95-7043-01 11 86662732 86662732 C A FZD4 Missense_Mutation p.A356S 0.64 tolerated(0.55) probably_damaging(0.973) TCGA-95-7043-01 11 92086947 92086947 C A FAT3 Missense_Mutation p.R557S 0.28 probably_damaging(1) TCGA-95-7043-01 11 92616385 92616385 G T FAT3 Missense_Mutation p.G4255W 0.45 possibly_damaging(0.648) TCGA-95-7043-01 11 94180593 94180593 C A MRE11A Missense_Mutation p.R525S 0.55 deleterious(0.05) benign(0.037) TCGA-95-7043-01 12 100377919 100377919 C T ANKS1B Missense_Mutation p.G33S 0.80 tolerated(0.76) benign(0.007) TCGA-95-7043-01 12 109192936 109192936 C A SSH1 Missense_Mutation p.V397L 0.92 deleterious(0.02) possibly_damaging(0.867) TCGA-95-7043-01 12 111731317 111731317 C A CUX2 Silent p.P168P 0.24 TCGA-95-7043-01 12 112375995 112375995 C A TMEM116 Missense_Mutation p.R112L 0.23 tolerated(0.71) benign(0.127) TCGA-95-7043-01 12 113303256 113303256 G T RPH3A Missense_Mutation p.V90L 0.61 deleterious(0.02) benign(0.059) TCGA-95-7043-01 12 113307593 113307593 C G RPH3A Missense_Mutation p.Q214E 0.66 tolerated(0.84) benign(0.013) TCGA-95-7043-01 12 113354411 113354411 C A OAS1 Missense_Mutation p.T251K 0.67 deleterious(0) probably_damaging(0.997) TCGA-95-7043-01 12 114397122 114397122 C A RBM19 Missense_Mutation p.A156S 0.15 tolerated(0.18) benign(0.019) TCGA-95-7043-01 12 114793770 114793770 C A TBX5 Missense_Mutation p.R375L 0.62 deleterious(0) probably_damaging(0.919) TCGA-95-7043-01 12 115118881 115118881 C A TBX3 Missense_Mutation p.D154Y 0.60 deleterious(0) probably_damaging(1) TCGA-95-7043-01 12 117968764 117968764 G A KSR2 Missense_Mutation p.P595L 0.35 tolerated(0.09) benign(0.026) TCGA-95-7043-01 12 120156602 120156602 T C CIT Missense_Mutation p.E1302G 0.05 deleterious(0.04) benign(0.37) TCGA-95-7043-01 12 120171981 120171981 T A CIT Missense_Mutation p.E1113V 0.68 deleterious(0) probably_damaging(0.974) TCGA-95-7043-01 12 122012500 122012500 T C KDM2B Splice_Site p.X117_splice 0.13 TCGA-95-7043-01 12 122615452 122615452 C T MLXIP Silent p.D324D 0.64 TCGA-95-7043-01 12 125449024 125449024 G T DHX37 Missense_Mutation p.S654Y 0.58 deleterious(0) probably_damaging(0.986) TCGA-95-7043-01 12 126139074 126139074 C A TMEM132B Missense_Mutation p.P1019T 0.45 tolerated(0.32) benign(0.394) TCGA-95-7043-01 12 130935811 130935811 G T RIMBP2 Missense_Mutation p.P128T 0.69 tolerated(0.1) possibly_damaging(0.623) TCGA-95-7043-01 12 133244114 133244114 C A POLE Missense_Mutation p.R765L 0.64 deleterious(0) probably_damaging(1) TCGA-95-7043-01 12 133727739 133727739 G - CTD-2140B24.4 Frame_Shift_Del 0.21 TCGA-95-7043-01 12 18641550 18641550 A T PIK3C2G Missense_Mutation p.D850V 0.67 deleterious(0.04) possibly_damaging(0.824) TCGA-95-7043-01 12 20807033 20807033 G A PDE3A Nonsense_Mutation p.W1026* 0.62 TCGA-95-7043-01 12 21689983 21689983 C T GYS2 Missense_Mutation p.E673K 0.62 tolerated_low_confidence(0.06) probably_damaging(0.991) TCGA-95-7043-01 12 23728652 23728652 G - SOX5 Frame_Shift_Del p.L429Sfs*9 0.42 TCGA-95-7043-01 12 24736767 24736767 C A LINC00477 RNA 0.64 TCGA-95-7043-01 12 247619 247619 C A IQSEC3 Missense_Mutation p.L364M 0.25 tolerated(0.24) possibly_damaging(0.876) TCGA-95-7043-01 12 25047340 25047340 C A BCAT1 Nonsense_Mutation p.G62* 0.67 TCGA-95-7043-01 12 25047341 25047341 A G BCAT1 Silent p.F61F 0.67 TCGA-95-7043-01 12 27850246 27850247 - A REP15 3'UTR 0.33 TCGA-95-7043-01 12 3104151 3104151 G T TEAD4 Missense_Mutation p.K73N 0.91 deleterious(0.01) probably_damaging(0.991) TCGA-95-7043-01 12 34179644 34179644 G T ALG10 Missense_Mutation p.V406F 0.72 deleterious(0.02) possibly_damaging(0.797) TCGA-95-7043-01 12 39751058 39751058 G A KIF21A Missense_Mutation p.A466V 0.74 tolerated(0.11) benign(0.003) TCGA-95-7043-01 12 44913928 44913928 G T NELL2 Missense_Mutation p.R804S 0.67 deleterious(0) possibly_damaging(0.6) TCGA-95-7043-01 12 48145203 48145203 C A RAPGEF3 Missense_Mutation p.D161Y 0.83 deleterious(0) probably_damaging(0.981) TCGA-95-7043-01 12 49521984 49521984 T C TUBA1B Silent p.V371V 0.71 TCGA-95-7043-01 12 51752990 51752990 C A GALNT6 Missense_Mutation p.A432S 0.79 deleterious(0) probably_damaging(0.997) TCGA-95-7043-01 12 6219732 6219732 C G VWF Missense_Mutation p.A114P 0.39 deleterious(0) probably_damaging(0.993) TCGA-95-7043-01 12 64860683 64860683 G T TBK1 Missense_Mutation p.G121C 0.78 deleterious(0) possibly_damaging(0.894) TCGA-95-7043-01 12 67699358 67699358 G T CAND1 Missense_Mutation p.G637V 0.88 tolerated(0.36) benign(0.011) TCGA-95-7043-01 12 6970680 6970680 G T USP5 Silent p.R524R 0.88 TCGA-95-7043-01 12 70195437 70195437 G A RAB3IP Missense_Mutation p.E372K 0.78 deleterious(0) possibly_damaging(0.852) TCGA-95-7043-01 12 77444526 77444526 T A E2F7 Splice_Site p.X124_splice 0.79 TCGA-95-7043-01 12 81111175 81111175 G T MYF5 Silent p.T111T 0.70 TCGA-95-7043-01 12 83251126 83251126 G T TMTC2 Missense_Mutation p.D141Y 0.85 deleterious(0) probably_damaging(1) TCGA-95-7043-01 12 85460613 85460613 G T LRRIQ1 Missense_Mutation p.G878C 0.78 deleterious(0) probably_damaging(1) TCGA-95-7043-01 12 85500333 85500333 G A LRRIQ1 Missense_Mutation p.C1106Y 0.82 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 12 91347991 91347991 C A CCER1 Nonsense_Mutation p.E177* 0.76 TCGA-95-7043-01 12 91445104 91445104 A G KERA 3'UTR 0.85 TCGA-95-7043-01 12 9265129 9265129 G T A2M Missense_Mutation p.P92T 0.92 deleterious(0) possibly_damaging(0.507) TCGA-95-7043-01 12 93968550 93968550 G T SOCS2 Missense_Mutation p.E64D 0.90 tolerated(1) benign(0.001) TCGA-95-7043-01 12 94562941 94562941 C A PLXNC1 Missense_Mutation p.Q359K 0.73 tolerated(1) benign(0) TCGA-95-7043-01 13 102051436 102051436 T C NALCN Silent p.P14P 0.35 TCGA-95-7043-01 13 102051437 102051437 G T NALCN Missense_Mutation p.P14Q 0.35 tolerated(0.17) possibly_damaging(0.579) TCGA-95-7043-01 13 103718339 103718339 C A SLC10A2 Silent p.S87S 0.46 TCGA-95-7043-01 13 106124955 106124955 G T DAOA Missense_Mutation p.G68C 0.35 deleterious_low_confidence(0.04) probably_damaging(0.992) TCGA-95-7043-01 13 111138059 111138059 G T COL4A2 Missense_Mutation p.R1028M 0.49 possibly_damaging(0.902) TCGA-95-7043-01 13 113536149 113536149 G A ATP11A 3'UTR 0.54 TCGA-95-7043-01 13 113832441 113832441 G A PCID2 Intron 0.35 TCGA-95-7043-01 13 114817632 114817632 T A RASA3 Splice_Site p.X58_splice 0.38 TCGA-95-7043-01 13 19753574 19753574 C A TUBA3C Missense_Mutation p.G45W 0.33 deleterious_low_confidence(0.01) probably_damaging(0.912) TCGA-95-7043-01 13 20579273 20579273 A G ZMYM2 Missense_Mutation p.Q398R 0.37 deleterious(0.02) probably_damaging(0.987) TCGA-95-7043-01 13 24415500 24415500 C A MIPEP Missense_Mutation p.V412L 0.26 tolerated(0.32) benign(0.03) TCGA-95-7043-01 13 25433235 25433235 C A RNF17 Missense_Mutation p.A1236E 0.46 deleterious(0.01) probably_damaging(0.992) TCGA-95-7043-01 13 29598964 29598964 G T MTUS2 Missense_Mutation p.E53D 0.37 tolerated(0.12) possibly_damaging(0.637) TCGA-95-7043-01 13 31506870 31506870 C A TEX26 Silent p.P6P 0.30 TCGA-95-7043-01 13 32355867 32355867 C A RXFP2 Nonsense_Mutation p.S282* 0.53 TCGA-95-7043-01 13 33222891 33222891 G T PDS5B Intron 0.48 TCGA-95-7043-01 13 35923251 35923251 G C NBEA Silent p.L1970L 0.30 TCGA-95-7043-01 13 36049778 36049778 G T MAB21L1 Nonsense_Mutation p.Y166* 0.44 TCGA-95-7043-01 13 37014166 37014166 C A CCNA1 Missense_Mutation p.T315N 0.43 deleterious(0) probably_damaging(1) TCGA-95-7043-01 13 38211559 38211559 C A TRPC4 Silent p.P810P 0.45 TCGA-95-7043-01 13 38248495 38248495 C T TRPC4 Nonsense_Mutation p.W415* 0.34 TCGA-95-7043-01 13 39542626 39542626 G T STOML3 Silent p.R188R 0.30 TCGA-95-7043-01 13 39917996 39917996 G A LHFP 3'UTR 0.36 TCGA-95-7043-01 13 40175298 40175298 C A LHFP Missense_Mutation p.C19F 0.30 deleterious(0.01) possibly_damaging(0.828) TCGA-95-7043-01 13 41656988 41656988 A C WBP4 Missense_Mutation p.K357Q 0.39 deleterious(0) probably_damaging(0.986) TCGA-95-7043-01 13 44455341 44455341 G A LACC1 Missense_Mutation p.E74K 0.46 tolerated(0.71) benign(0.001) TCGA-95-7043-01 13 45975271 45975271 C A SLC25A30 Missense_Mutation p.K187N 0.50 deleterious(0) probably_damaging(0.998) TCGA-95-7043-01 13 47469908 47469908 C A HTR2A Missense_Mutation p.W45L 0.38 tolerated(0.88) benign(0) TCGA-95-7043-01 13 49796399 49796399 C A MLNR Silent p.S375S 0.59 TCGA-95-7043-01 13 50064963 50064963 T A SETDB2 Missense_Mutation p.S653R 0.47 deleterious(0) probably_damaging(0.978) TCGA-95-7043-01 13 52364174 52364174 C - DHRS12 Frame_Shift_Del p.E141Kfs*18 0.22 TCGA-95-7043-01 13 52972231 52972231 T C THSD1 Missense_Mutation p.N53D 0.41 deleterious(0.02) benign(0.077) TCGA-95-7043-01 13 53419026 53419026 G C PCDH8 Missense_Mutation p.S961C 0.36 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 13 58299198 58299198 C A PCDH17 Missense_Mutation p.Q1084K 0.41 tolerated_low_confidence(0.08) benign(0.057) TCGA-95-7043-01 13 72204847 72204847 G T DACH1 Missense_Mutation p.L325M 0.42 probably_damaging(0.986) TCGA-95-7043-01 13 77651280 77651280 C A MYCBP2 Intron 0.39 TCGA-95-7043-01 13 77748563 77748563 C T MYCBP2 Missense_Mutation p.G1807E 0.41 probably_damaging(1) TCGA-95-7043-01 13 88327910 88327910 C G SLITRK5 Silent p.S89S 0.40 TCGA-95-7043-01 13 88329734 88329734 C A SLITRK5 Missense_Mutation p.S697R 0.41 tolerated(0.38) benign(0.018) TCGA-95-7043-01 13 97485261 97485261 G A HS6ST3 Missense_Mutation p.E409K 0.34 tolerated(0.09) probably_damaging(0.918) TCGA-95-7043-01 13 99505739 99505739 C A DOCK9 Missense_Mutation p.R1290L 0.43 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 14 101350919 101350919 C T RTL1 Silent p.L69L 0.83 TCGA-95-7043-01 14 102028296 102028296 G T DIO3 Missense_Mutation p.A155S 0.87 tolerated(0.2) benign(0.146) TCGA-95-7043-01 14 102874864 102874864 A G TECPR2 Missense_Mutation p.I130V 0.90 tolerated(0.49) benign(0.338) TCGA-95-7043-01 14 102918939 102918939 G T TECPR2 Missense_Mutation p.W1205C 0.93 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 14 104121095 104121095 T C KLC1 Missense_Mutation p.V65A 0.22 tolerated(0.41) benign(0.03) TCGA-95-7043-01 14 105410035 105410035 G T AHNAK2 Missense_Mutation p.P3918H 0.84 probably_damaging(0.992) TCGA-95-7043-01 14 106208309 106208309 C A IGHG1 Silent p.L197L 0.90 TCGA-95-7043-01 14 106452803 106452803 G C IGHV1-2 Missense_Mutation p.N73K 0.84 tolerated(0.43) benign(0.001) TCGA-95-7043-01 14 106725296 106725296 G A IGHV3-23 Missense_Mutation p.R86W 0.46 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-95-7043-01 14 107179003 107179003 G T IGHV2-70 Silent p.I58I 0.27 TCGA-95-7043-01 14 20444383 20444383 C A OR4K15 Missense_Mutation p.L236I 0.40 tolerated(0.85) benign(0.013) TCGA-95-7043-01 14 20502144 20502144 G T OR4K13 Nonsense_Mutation p.Y258* 0.39 TCGA-95-7043-01 14 20836575 20836575 T C TEP1 3'UTR 0.37 TCGA-95-7043-01 14 20926740 20926740 T A TMEM55B Missense_Mutation p.H278L 0.45 tolerated(0.07) benign(0.164) TCGA-95-7043-01 14 22580941 22580941 C G TRAV25 Missense_Mutation p.T95R 0.37 tolerated(0.19) benign(0.202) TCGA-95-7043-01 14 22616588 22616588 C A TRAV27 3'Flank 0.37 TCGA-95-7043-01 14 23868097 23868097 G A MYH6 Silent p.H577H 0.79 TCGA-95-7043-01 14 29237535 29237535 G A FOXG1 Silent p.L350L 0.87 TCGA-95-7043-01 14 38678810 38678810 G A SSTR1 Silent p.G72G 0.90 TCGA-95-7043-01 14 38724269 38724269 G T CLEC14A Missense_Mutation p.P320Q 0.82 deleterious_low_confidence(0.03) benign(0.132) TCGA-95-7043-01 14 55231218 55231218 G T SAMD4A Missense_Mutation p.S519I 0.86 deleterious(0) possibly_damaging(0.448) TCGA-95-7043-01 14 57078985 57078985 G T TMEM260 Missense_Mutation p.S280I 0.91 deleterious(0.01) possibly_damaging(0.491) TCGA-95-7043-01 14 63447595 63447595 C G KCNH5 Missense_Mutation p.D313H 0.91 deleterious(0.02) probably_damaging(0.961) TCGA-95-7043-01 14 64447428 64447428 T A SYNE2 Nonsense_Mutation p.C542* 0.75 TCGA-95-7043-01 14 65233335 65233335 G T SPTB Intron 0.79 TCGA-95-7043-01 14 74206148 74206148 C T ELMSAN1 Silent p.Q188Q 0.79 TCGA-95-7043-01 14 92136302 92136302 G T CATSPERB Silent p.A381A 0.39 TCGA-95-7043-01 14 94469586 94469586 G T LINC00521 RNA 0.78 TCGA-95-7043-01 14 94770871 94770871 G - SERPINA6 Frame_Shift_Del p.L368* 0.47 TCGA-95-7043-01 15 22332473 22332473 A T RP11-69H14.6 RNA 0.19 TCGA-95-7043-01 15 22368844 22368844 A G OR4M2 Missense_Mutation p.K90R 0.17 deleterious(0.03) possibly_damaging(0.872) TCGA-95-7043-01 15 22382695 22382695 T C OR4N4 Missense_Mutation p.F75L 0.04 deleterious(0.01) benign(0.213) TCGA-95-7043-01 15 22709915 22709915 C G AC116165.1 5'Flank 0.13 TCGA-95-7043-01 15 23441081 23441081 G T AC100757.1 5'Flank 0.22 TCGA-95-7043-01 15 23890725 23890725 C A MAGEL2 Missense_Mutation p.R119M 0.33 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-95-7043-01 15 23932277 23932277 C A NDN Nonsense_Mutation p.E30* 0.44 TCGA-95-7043-01 15 24921513 24921513 G T NPAP1 Missense_Mutation p.V167L 0.34 tolerated(0.29) benign(0.194) TCGA-95-7043-01 15 24922265 24922265 T A NPAP1 Silent p.T417T 0.36 TCGA-95-7043-01 15 24922352 24922352 C T NPAP1 Silent p.T446T 0.36 TCGA-95-7043-01 15 24922627 24922627 C A NPAP1 Missense_Mutation p.T538N 0.45 deleterious(0.03) possibly_damaging(0.469) TCGA-95-7043-01 15 24924332 24924332 C A NPAP1 Silent p.G1106G 0.34 TCGA-95-7043-01 15 28096607 28096607 C A OCA2 Silent p.L753L 0.19 TCGA-95-7043-01 15 28211927 28211927 C A OCA2 Silent p.G515G 0.44 TCGA-95-7043-01 15 28260048 28260048 G T OCA2 Silent p.A306A 0.32 TCGA-95-7043-01 15 28263615 28263615 C T OCA2 Silent p.G245G 0.44 TCGA-95-7043-01 15 28377876 28377876 C - HERC2 Frame_Shift_Del p.D4111Tfs*22 0.28 TCGA-95-7043-01 15 28538048 28538048 C A HERC2 Missense_Mutation p.W103L 0.53 possibly_damaging(0.549) TCGA-95-7043-01 15 31358394 31358394 G T TRPM1 Missense_Mutation p.N242K 0.46 deleterious(0) probably_damaging(0.993) TCGA-95-7043-01 15 31779767 31779767 C T OTUD7A Missense_Mutation p.V385M 0.79 deleterious(0) probably_damaging(0.997) TCGA-95-7043-01 15 33939623 33939623 A T RYR3 Splice_Site p.X1314_splice 0.45 TCGA-95-7043-01 15 34446862 34446862 C A KATNBL1 Missense_Mutation p.L47F 0.30 tolerated(0.12) probably_damaging(0.999) TCGA-95-7043-01 15 34825090 34825090 C T GOLGA8B Missense_Mutation p.R81K 0.17 tolerated(0.06) benign(0.185) TCGA-95-7043-01 15 39883723 39883723 G A THBS1 Missense_Mutation p.D811N 0.22 deleterious(0) probably_damaging(0.987) TCGA-95-7043-01 15 41347448 41347448 C A INO80 Nonsense_Mutation p.E729* 0.42 TCGA-95-7043-01 15 42021366 42021366 G - MGA Frame_Shift_Del p.E1222Kfs*14 0.32 TCGA-95-7043-01 15 42436328 42436328 C T PLA2G4F Missense_Mutation p.A664T 0.39 tolerated(0.33) benign(0.057) TCGA-95-7043-01 15 43577146 43577146 C G TGM7 Missense_Mutation p.M290I 0.47 deleterious(0.01) possibly_damaging(0.608) TCGA-95-7043-01 15 43815578 43815578 A G MAP1A Missense_Mutation p.D636G 0.22 possibly_damaging(0.7) TCGA-95-7043-01 15 43851102 43851102 G A PPIP5K1 Silent p.T1092T 0.37 TCGA-95-7043-01 15 44876469 44876469 C G SPG11 Silent p.L1803L 0.45 TCGA-95-7043-01 15 45411404 45411404 G A DUOXA1 Missense_Mutation p.A311V 0.49 tolerated(0.05) benign(0.184) TCGA-95-7043-01 15 48063806 48063806 C A SEMA6D Missense_Mutation p.P1016T 0.51 tolerated(0.11) benign(0.138) TCGA-95-7043-01 15 49800546 49800546 C T FAM227B Splice_Site p.X292_splice 0.31 TCGA-95-7043-01 15 52192420 52192420 G A TMOD3 Silent p.T268T 0.26 TCGA-95-7043-01 15 57910261 57910261 A G MYZAP Missense_Mutation p.R65G 0.33 tolerated(0.6) benign(0.001) TCGA-95-7043-01 15 59523934 59523934 G A MYO1E Silent p.A159A 0.40 TCGA-95-7043-01 15 62283946 62283946 C A VPS13C Missense_Mutation p.R470L 0.57 tolerated(0.19) benign(0.115) TCGA-95-7043-01 15 63058585 63058585 A T TLN2 Silent p.T1720T 0.40 TCGA-95-7043-01 15 64499794 64499794 C T CSNK1G1 Splice_Site p.X227_splice 0.39 TCGA-95-7043-01 15 65502107 65502107 C A CILP 5'UTR 0.53 TCGA-95-7043-01 15 65667730 65667730 G T IGDCC3 Missense_Mutation p.H38Q 0.64 tolerated(0.29) benign(0.093) TCGA-95-7043-01 15 65993503 65993503 T C DENND4A Missense_Mutation p.R863G 0.42 tolerated(0.14) benign(0.001) TCGA-95-7043-01 15 68504016 68504016 C A CLN6 Silent p.T161T 0.41 TCGA-95-7043-01 15 69747561 69747561 G T RPLP1 Missense_Mutation p.G67V 0.44 deleterious(0.02) possibly_damaging(0.853) TCGA-95-7043-01 15 72195371 72195371 G A MYO9A Nonsense_Mutation p.R971* 0.17 TCGA-95-7043-01 15 72873134 72873134 G T ARIH1 Missense_Mutation p.Q426H 0.26 tolerated(0.08) benign(0.055) TCGA-95-7043-01 15 73616435 73616435 C T HCN4 Missense_Mutation p.R713H 0.40 deleterious(0) unknown(0) TCGA-95-7043-01 15 73616437 73616437 G T HCN4 Missense_Mutation p.D712E 0.39 deleterious(0.01) unknown(0) TCGA-95-7043-01 15 74702899 74702899 C A SEMA7A 3'UTR 0.38 TCGA-95-7043-01 15 76152291 76152291 G C UBE2Q2 Missense_Mutation p.E119Q 0.37 tolerated(0.14) benign(0.289) TCGA-95-7043-01 15 77406890 77406890 C A PEAK1 Nonsense_Mutation p.E1617* 0.43 TCGA-95-7043-01 15 78316866 78316866 G A TBC1D2B Missense_Mutation p.L368F 0.51 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 15 78585583 78585583 C A WDR61 Missense_Mutation p.W24C 0.25 deleterious(0) probably_damaging(0.961) TCGA-95-7043-01 15 79058984 79058984 C T ADAMTS7 Missense_Mutation p.G1090E 0.39 tolerated(0.12) benign(0.007) TCGA-95-7043-01 15 79189377 79189378 - T MORF4L1 Frame_Shift_Ins p.A353Vfs*4 0.22 TCGA-95-7043-01 15 79614395 79614395 G T TMED3 Nonsense_Mutation p.E165* 0.34 TCGA-95-7043-01 15 79748577 79748577 C A KIAA1024 Missense_Mutation p.L30M 0.32 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 15 80460463 80460463 G A FAH Silent p.R175R 0.48 TCGA-95-7043-01 15 81598783 81598783 G A IL16 Silent p.T1234T 0.44 TCGA-95-7043-01 15 82422771 82422771 C A EFTUD1 Silent p.V1102V 0.51 TCGA-95-7043-01 15 84442319 84442319 G A ADAMTSL3 Nonsense_Mutation p.W78* 0.44 TCGA-95-7043-01 15 88576188 88576188 A C NTRK3 Missense_Mutation p.D495E 0.46 tolerated(1) benign(0.039) TCGA-95-7043-01 15 89198669 89198669 G T ISG20 Silent p.S151S 0.48 TCGA-95-7043-01 15 89398775 89398775 C A ACAN Missense_Mutation p.P987T 0.35 tolerated(0.1) benign(0.269) TCGA-95-7043-01 16 15045757 15045757 G T NPIPA1 Nonsense_Mutation p.E310* 0.30 TCGA-95-7043-01 16 19584460 19584460 G A C16orf62 Missense_Mutation p.R191H 0.45 deleterious(0.03) possibly_damaging(0.584) TCGA-95-7043-01 16 19883423 19883423 C T GPRC5B Missense_Mutation p.A249T 0.23 tolerated(0.05) benign(0.014) TCGA-95-7043-01 16 20043302 20043302 G T GPR139 Missense_Mutation p.L273I 0.41 tolerated(0.06) probably_damaging(0.994) TCGA-95-7043-01 16 20335515 20335515 G T GP2 Missense_Mutation p.T53N 0.36 tolerated(0.1) benign(0.039) TCGA-95-7043-01 16 20370606 20370606 G T PDILT 3'UTR 0.44 TCGA-95-7043-01 16 20386194 20386194 C T PDILT Missense_Mutation p.V211I 0.36 tolerated(0.52) benign(0.079) TCGA-95-7043-01 16 20996710 20996710 C A DNAH3 Missense_Mutation p.A2452S 0.36 tolerated(0.37) benign(0.003) TCGA-95-7043-01 16 2156625 2156625 G A PKD1 Silent p.T2421T 0.32 TCGA-95-7043-01 16 23718351 23718351 C A ERN2 Missense_Mutation p.S167I 0.45 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 16 24196448 24196448 C A PRKCB Missense_Mutation p.P517H 0.37 deleterious(0.01) benign(0.284) TCGA-95-7043-01 16 25235842 25235842 G T AQP8 Missense_Mutation p.G183C 0.35 deleterious(0.04) possibly_damaging(0.852) TCGA-95-7043-01 16 27480842 27480842 T A GTF3C1 Missense_Mutation p.D1615V 0.49 deleterious(0) possibly_damaging(0.851) TCGA-95-7043-01 16 28164033 28164033 G A XPO6 Nonsense_Mutation p.Q391* 0.29 TCGA-95-7043-01 16 30081553 30081553 G T ALDOA 3'UTR 0.35 TCGA-95-7043-01 16 30718950 30718950 C T SRCAP Missense_Mutation p.R184W 0.40 unknown(0) TCGA-95-7043-01 16 3140419 3140419 G T ZSCAN10 Missense_Mutation p.P284H 0.40 deleterious(0.01) possibly_damaging(0.541) TCGA-95-7043-01 16 424377 424377 C A TMEM8A Silent p.T533T 0.29 TCGA-95-7043-01 16 48209260 48209260 C T ABCC11 Missense_Mutation p.G1203S 0.37 deleterious(0.02) probably_damaging(0.914) TCGA-95-7043-01 16 49671762 49671762 G T ZNF423 Missense_Mutation p.A434E 0.41 tolerated(0.72) benign(0.426) TCGA-95-7043-01 16 53859963 53859963 G T FTO Missense_Mutation p.C104F 0.39 tolerated(0.61) benign(0.076) TCGA-95-7043-01 16 56485445 56485445 G T OGFOD1 5'UTR 0.33 TCGA-95-7043-01 16 57608834 57608834 G A GPR114 Missense_Mutation p.R439H 0.51 tolerated(0.13) benign(0.11) TCGA-95-7043-01 16 57741492 57741492 A T CCDC135 Missense_Mutation p.S327C 0.51 deleterious(0) probably_damaging(0.987) TCGA-95-7043-01 16 58617059 58617059 C A CNOT1 Silent p.V278V 0.67 TCGA-95-7043-01 16 66422325 66422325 T A CDH5 Missense_Mutation p.F200I 0.43 deleterious(0) probably_damaging(1) TCGA-95-7043-01 16 67325561 67325561 G T KCTD19 Missense_Mutation p.P800T 0.37 tolerated(0.26) benign(0.002) TCGA-95-7043-01 16 67694282 67694282 G A ACD Nonsense_Mutation p.R34* 0.55 TCGA-95-7043-01 16 67708931 67708931 C A GFOD2 3'UTR 0.42 TCGA-95-7043-01 16 67943054 67943054 G T PSKH1 Silent p.R134R 0.42 TCGA-95-7043-01 16 71418248 71418248 G C CALB2 Silent p.L180L 0.42 TCGA-95-7043-01 16 72170413 72170413 C A PMFBP1 Missense_Mutation p.Q379H 0.45 deleterious(0.03) probably_damaging(0.957) TCGA-95-7043-01 16 72829861 72829862 - C ZFHX3 Frame_Shift_Ins p.S2241Kfs*30 0.28 TCGA-95-7043-01 16 74339560 74339560 G A PSMD7 Missense_Mutation p.E302K 0.29 tolerated(0.67) unknown(0) TCGA-95-7043-01 16 75138794 75138794 G A ZNRF1 Intron 0.27 TCGA-95-7043-01 16 76486650 76486650 C A CNTNAP4 Silent p.P366P 0.48 TCGA-95-7043-01 16 7657325 7657325 C A RBFOX1 Missense_Mutation p.P241T 0.41 deleterious(0.02) probably_damaging(0.984) TCGA-95-7043-01 16 81151043 81151043 C A PKD1L2 RNA 0.41 TCGA-95-7043-01 16 81187854 81187854 G T PKD1L2 RNA 0.43 TCGA-95-7043-01 16 81241150 81241150 A T PKD1L2 Missense_Mutation p.L284Q 0.33 deleterious(0) probably_damaging(1) TCGA-95-7043-01 16 82034396 82034396 C A SDR42E1 Missense_Mutation p.R23L 0.36 deleterious(0.04) possibly_damaging(0.863) TCGA-95-7043-01 16 84031857 84031857 G C NECAB2 Silent p.L299L 0.47 TCGA-95-7043-01 16 84050271 84050271 C A SLC38A8 Missense_Mutation p.A339S 0.63 tolerated(0.73) benign(0.008) TCGA-95-7043-01 16 84227731 84227731 G T ADAD2 Missense_Mutation p.D180Y 0.47 deleterious_low_confidence(0.01) benign(0.348) TCGA-95-7043-01 16 87636837 87636837 G A JPH3 Missense_Mutation p.V29I 0.36 tolerated(1) benign(0.006) TCGA-95-7043-01 16 9943701 9943701 C T GRIN2A Missense_Mutation p.A414T 0.10 tolerated(0.14) benign(0.185) TCGA-95-7043-01 17 10367997 10367997 C G MYH4 Splice_Site p.X178_splice 0.60 TCGA-95-7043-01 17 10368006 10368006 G T MYH4 Silent p.I175I 0.62 TCGA-95-7043-01 17 10424660 10424660 G T MYH2 Silent p.S1921S 0.83 TCGA-95-7043-01 17 10532963 10532963 G A MYH3 Missense_Mutation p.S1916F 0.86 deleterious(0) probably_damaging(0.995) TCGA-95-7043-01 17 10552923 10552923 G T MYH3 Missense_Mutation p.L205M 0.85 deleterious(0.04) benign(0.309) TCGA-95-7043-01 17 11645507 11645507 G - DNAH9 Frame_Shift_Del p.V1997Ffs*6 0.44 TCGA-95-7043-01 17 11737983 11737983 C A DNAH9 Missense_Mutation p.A3092D 0.74 benign(0.033) TCGA-95-7043-01 17 16325967 16325967 G A TRPV2 Missense_Mutation p.G130E 0.67 deleterious(0) probably_damaging(1) TCGA-95-7043-01 17 16631038 16631038 G T CCDC144A Nonsense_Mutation p.E697* 0.64 TCGA-95-7043-01 17 17700138 17700138 C T RAI1 Silent p.L1292L 0.80 TCGA-95-7043-01 17 21201777 21201777 C A MAP2K3 Silent p.P34P 0.29 TCGA-95-7043-01 17 21731007 21731007 G T UBBP4 Missense_Mutation p.K103N 0.29 deleterious(0) probably_damaging(0.973) TCGA-95-7043-01 17 27425126 27425126 C A MYO18A Silent p.L1329L 0.28 TCGA-95-7043-01 17 27958261 27958261 C G SSH2 Missense_Mutation p.Q1290H 0.49 tolerated(0.08) possibly_damaging(0.88) TCGA-95-7043-01 17 29562765 29562765 G T NF1 Missense_Mutation p.S1282I 0.60 deleterious(0) probably_damaging(0.993) TCGA-95-7043-01 17 29653020 29653020 A G NF1 Missense_Mutation p.N1673S 0.25 tolerated(0.11) probably_damaging(0.971) TCGA-95-7043-01 17 30380301 30380301 G - LRRC37B Frame_Shift_Del p.A934Hfs*29 0.23 TCGA-95-7043-01 17 32598262 32598262 C T CCL7 Silent p.H58H 0.54 TCGA-95-7043-01 17 33427891 33427891 G A RAD51D 3'UTR 0.42 TCGA-95-7043-01 17 33592371 33592371 A T SLFN5 Missense_Mutation p.N714Y 0.25 deleterious(0.02) benign(0.011) TCGA-95-7043-01 17 33738442 33738442 G A SLFN12 Missense_Mutation p.A551V 0.57 tolerated_low_confidence(1) possibly_damaging(0.483) TCGA-95-7043-01 17 34072312 34072312 C A GAS2L2 Missense_Mutation p.S735I 0.51 tolerated(0.11) benign(0.018) TCGA-95-7043-01 17 34261789 34261789 C A LYZL6 3'UTR 0.67 TCGA-95-7043-01 17 3458053 3458053 G T TRPV3 Missense_Mutation p.P31Q 0.95 deleterious(0.01) benign(0.321) TCGA-95-7043-01 17 34797787 34797787 A T TBC1D3G Missense_Mutation p.L450Q 0.29 deleterious(0) probably_damaging(0.959) TCGA-95-7043-01 17 3514000 3514000 C A SHPK Missense_Mutation p.G431W 0.86 deleterious(0) probably_damaging(1) TCGA-95-7043-01 17 35945436 35945436 G T SYNRG Silent p.P158P 0.23 TCGA-95-7043-01 17 3779708 3779708 G A CAMKK1 Nonsense_Mutation p.Q307* 0.76 TCGA-95-7043-01 17 38079405 38079405 T A ORMDL3 Missense_Mutation p.T96S 0.36 tolerated(0.11) possibly_damaging(0.51) TCGA-95-7043-01 17 39197547 39197547 A G KRTAP1-1 Missense_Mutation p.C35R 0.26 deleterious(0) possibly_damaging(0.712) TCGA-95-7043-01 17 39535648 39535648 G T KRT34 Missense_Mutation p.T320K 0.17 deleterious(0.01) probably_damaging(0.984) TCGA-95-7043-01 17 39551818 39551818 C A KRT31 Missense_Mutation p.A216S 0.36 deleterious(0.01) probably_damaging(0.947) TCGA-95-7043-01 17 39553206 39553206 C A KRT31 Missense_Mutation p.Q130H 0.48 tolerated(0.11) benign(0.03) TCGA-95-7043-01 17 3955431 3955431 C A ZZEF1 Splice_Site p.X1812_splice 1.00 TCGA-95-7043-01 17 39684352 39684352 C A KRT19 Missense_Mutation p.A50S 0.44 tolerated(0.88) benign(0.01) TCGA-95-7043-01 17 39766755 39766755 T A KRT16 Missense_Mutation p.M370L 0.51 tolerated(0.85) benign(0.006) TCGA-95-7043-01 17 39913690 39913690 G T JUP Missense_Mutation p.H675N 0.54 tolerated(0.44) benign(0.001) TCGA-95-7043-01 17 40328139 40328139 A T KCNH4 Missense_Mutation p.D254E 0.57 tolerated(0.28) benign(0.001) TCGA-95-7043-01 17 40673079 40673079 G T ATP6V0A1 Missense_Mutation p.G820C 0.28 deleterious(0) probably_damaging(1) TCGA-95-7043-01 17 41622670 41622670 C T ETV4 Silent p.P42P 0.32 TCGA-95-7043-01 17 45669379 45669379 A G NPEPPS Missense_Mutation p.K440E 0.05 deleterious(0) probably_damaging(0.997) TCGA-95-7043-01 17 46629746 46629746 C A HOXB3 Missense_Mutation p.V31F 0.17 deleterious(0) benign(0.039) TCGA-95-7043-01 17 46703298 46703298 C A HOXB9 Missense_Mutation p.G112C 0.79 tolerated(0.19) probably_damaging(0.916) TCGA-95-7043-01 17 47115774 47115774 G A IGF2BP1 Missense_Mutation p.A216T 0.33 tolerated(0.19) possibly_damaging(0.593) TCGA-95-7043-01 17 48821101 48821101 A C LUC7L3 Missense_Mutation p.E154A 0.71 deleterious(0) unknown(0) TCGA-95-7043-01 17 51902054 51902054 C A KIF2B Missense_Mutation p.H554N 0.73 tolerated(0.53) benign(0.034) TCGA-95-7043-01 17 5485233 5485233 C A NLRP1 Nonsense_Mutation p.E200* 0.80 TCGA-95-7043-01 17 56060145 56060145 C A VEZF1 Missense_Mutation p.D215Y 0.23 deleterious(0) probably_damaging(0.997) TCGA-95-7043-01 17 56565295 56565295 G A HSF5 Missense_Mutation p.P114L 0.19 deleterious(0.01) benign(0.412) TCGA-95-7043-01 17 59793421 59793421 C A BRIP1 Nonsense_Mutation p.E795* 0.73 TCGA-95-7043-01 17 61957914 61957914 C A GH2 Missense_Mutation p.S225I 0.69 deleterious_low_confidence(0) possibly_damaging(0.766) TCGA-95-7043-01 17 61994796 61994796 G T GH1 Nonsense_Mutation p.S176* 0.68 TCGA-95-7043-01 17 62126469 62126469 C T ERN1 Missense_Mutation p.A783T 0.25 deleterious(0) probably_damaging(0.936) TCGA-95-7043-01 17 62968961 62968961 C A AMZ2P1 RNA 0.14 TCGA-95-7043-01 17 67266797 67266797 T A ABCA5 Missense_Mutation p.N996I 0.23 deleterious(0) probably_damaging(0.997) TCGA-95-7043-01 17 68128878 68128878 G T KCNJ16 Missense_Mutation p.R217I 0.75 deleterious(0) probably_damaging(0.979) TCGA-95-7043-01 17 72916480 72916480 C - USH1G Frame_Shift_Del p.A151Pfs*36 0.12 TCGA-95-7043-01 17 73177235 73177235 C A SUMO2 Missense_Mutation p.G24W 0.66 deleterious(0) probably_damaging(0.978) TCGA-95-7043-01 17 73567787 73567787 G T LLGL2 Missense_Mutation p.G739V 0.77 deleterious(0.01) possibly_damaging(0.768) TCGA-95-7043-01 17 74151371 74151371 T G RNF157 Missense_Mutation p.N576H 0.19 tolerated_low_confidence(0.05) benign(0.012) TCGA-95-7043-01 17 7578457 7578457 C A TP53 Missense_Mutation p.R158L 0.89 deleterious(0) probably_damaging(0.986) TCGA-95-7043-01 17 76570801 76570801 C T DNAH17 Silent p.V113V 0.70 TCGA-95-7043-01 17 77079562 77079562 A T ENGASE Splice_Site p.X381_splice 0.21 TCGA-95-7043-01 17 78073477 78073477 T C CCDC40 Missense_Mutation p.L1111P 0.24 deleterious(0) probably_damaging(0.984) TCGA-95-7043-01 17 78973065 78973065 G T CHMP6 3'UTR 0.15 TCGA-95-7043-01 17 79219442 79219442 G A SLC38A10 Nonsense_Mutation p.Q1092* 0.20 TCGA-95-7043-01 17 96918 96918 C A RPH3AL Silent p.T199T 0.88 TCGA-95-7043-01 18 10471946 10471946 A G APCDD1 Missense_Mutation p.H221R 0.43 tolerated(0.58) benign(0.004) TCGA-95-7043-01 18 14478135 14478135 C A CXADRP3 RNA 0.45 TCGA-95-7043-01 18 14537921 14537921 G T POTEC Missense_Mutation p.A230D 0.40 deleterious(0) benign(0.245) TCGA-95-7043-01 18 18539817 18539817 T C ROCK1 Missense_Mutation p.M1166V 0.40 deleterious(0) benign(0.077) TCGA-95-7043-01 18 19348713 19348713 G A MIB1 Silent p.K177K 0.32 TCGA-95-7043-01 18 20716526 20716526 G T CABLES1 Missense_Mutation p.G267V 0.54 deleterious_low_confidence(0) benign(0.203) TCGA-95-7043-01 18 22805247 22805247 C G ZNF521 Missense_Mutation p.V879L 0.68 tolerated(0.48) benign(0.283) TCGA-95-7043-01 18 22805797 22805797 G A ZNF521 Silent p.I695I 0.28 TCGA-95-7043-01 18 28712399 28712399 G A DSC1 Intron 0.46 TCGA-95-7043-01 18 2885111 2885111 C T EMILIN2 Missense_Mutation p.P136L 0.33 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 18 29056037 29056037 G T DSG3 Silent p.S938S 0.53 TCGA-95-7043-01 18 29446844 29446844 T A TRAPPC8 Missense_Mutation p.D853V 0.43 deleterious(0.01) benign(0.027) TCGA-95-7043-01 18 30092997 30092997 A T WBP11P1 RNA 0.27 TCGA-95-7043-01 18 30093482 30093482 C A WBP11P1 RNA 0.39 TCGA-95-7043-01 18 30260411 30260411 G T KLHL14 Missense_Mutation p.H464N 0.23 deleterious(0) probably_damaging(0.932) TCGA-95-7043-01 18 3126821 3126821 G A MYOM1 Missense_Mutation p.P957S 0.32 deleterious(0) probably_damaging(1) TCGA-95-7043-01 18 31319839 31319839 C G ASXL3 Missense_Mutation p.P824R 0.53 benign(0.329) TCGA-95-7043-01 18 346949 346949 G A COLEC12 Missense_Mutation p.R225W 0.30 deleterious(0) possibly_damaging(0.898) TCGA-95-7043-01 18 42530401 42530401 G T SETBP1 Nonsense_Mutation p.E366* 0.47 TCGA-95-7043-01 18 50832076 50832076 G T DCC Missense_Mutation p.W680C 0.30 deleterious(0.03) benign(0.025) TCGA-95-7043-01 18 51025781 51025781 C A DCC Missense_Mutation p.P1338T 0.49 deleterious(0.02) probably_damaging(0.996) TCGA-95-7043-01 18 54444048 54444048 G T WDR7 Missense_Mutation p.D962Y 0.16 deleterious(0.02) benign(0.121) TCGA-95-7043-01 18 56247141 56247141 G T ALPK2 Silent p.A289A 0.25 TCGA-95-7043-01 18 59221667 59221667 G C CDH20 Silent p.T715T 0.25 TCGA-95-7043-01 18 61459672 61459672 A G SERPINB7 Missense_Mutation p.S72G 0.65 tolerated(0.18) benign(0.053) TCGA-95-7043-01 18 70526112 70526112 C T NETO1 Missense_Mutation p.D140N 0.64 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 18 7231280 7231280 G T LRRC30 Missense_Mutation p.M48I 0.43 tolerated(0.21) benign(0.002) TCGA-95-7043-01 18 74962774 74962774 C A GALR1 Silent p.P90P 0.16 TCGA-95-7043-01 18 77489060 77489060 G T CTDP1 Missense_Mutation p.M857I 0.13 deleterious(0) probably_damaging(0.987) TCGA-95-7043-01 19 10610411 10610411 A G KEAP1 Missense_Mutation p.L100P 0.92 deleterious(0) probably_damaging(1) TCGA-95-7043-01 19 10794217 10794217 A T ILF3 Missense_Mutation p.K621M 0.72 tolerated(0.07) probably_damaging(0.964) TCGA-95-7043-01 19 1462038 1462038 G A APC2 Missense_Mutation p.C572Y 0.88 probably_damaging(0.994) TCGA-95-7043-01 19 16925938 16925938 G T NWD1 3'UTR 0.68 TCGA-95-7043-01 19 18561687 18561687 C A ELL Missense_Mutation p.K355N 0.69 deleterious(0.04) possibly_damaging(0.756) TCGA-95-7043-01 19 18672929 18672929 A G KXD1 Silent p.T21T 0.75 TCGA-95-7043-01 19 18704380 18704380 C G CRLF1 Missense_Mutation p.R422T 0.54 deleterious_low_confidence(0.01) benign(0.012) TCGA-95-7043-01 19 18709629 18709629 G T CRLF1 Missense_Mutation p.H160Q 0.46 tolerated(0.68) benign(0.001) TCGA-95-7043-01 19 20807979 20807979 C A ZNF626 Missense_Mutation p.G235V 0.48 deleterious(0.01) probably_damaging(0.975) TCGA-95-7043-01 19 22171598 22171598 G T ZNF208 Missense_Mutation p.N39K 0.21 deleterious(0) benign(0.353) TCGA-95-7043-01 19 22363718 22363718 G T ZNF676 Silent p.T267T 0.38 TCGA-95-7043-01 19 22574632 22574632 T A ZNF98 Nonsense_Mutation p.K469* 0.09 TCGA-95-7043-01 19 22847753 22847753 A T ZNF492 Nonsense_Mutation p.K428* 0.50 TCGA-95-7043-01 19 30936006 30936006 G T ZNF536 Missense_Mutation p.A513S 0.38 deleterious(0.02) probably_damaging(0.993) TCGA-95-7043-01 19 34868446 34868446 G T GPI Intron 0.28 TCGA-95-7043-01 19 35175591 35175591 A T ZNF302 Missense_Mutation p.S217C 0.45 deleterious(0.01) benign(0.363) TCGA-95-7043-01 19 35850157 35850157 G A FFAR3 Nonsense_Mutation p.W122* 0.19 TCGA-95-7043-01 19 36230358 36230358 G - IGFLR1 Frame_Shift_Del p.F298Lfs*5 0.36 TCGA-95-7043-01 19 36336385 36336385 G T NPHS1 Silent p.A605A 0.58 TCGA-95-7043-01 19 36518058 36518058 G T CLIP3 Missense_Mutation p.H94Q 0.40 tolerated(1) benign(0.027) TCGA-95-7043-01 19 36940594 36940594 C G ZNF566 Missense_Mutation p.R182T 0.32 tolerated(0.41) benign(0.164) TCGA-95-7043-01 19 37005495 37005495 C G ZNF260 Missense_Mutation p.G216R 0.51 deleterious(0.02) possibly_damaging(0.512) TCGA-95-7043-01 19 38903603 38903603 G T RASGRP4 Silent p.A501A 0.45 TCGA-95-7043-01 19 39063883 39063883 A G RYR1 Missense_Mutation p.I4689V 0.42 unknown(0) TCGA-95-7043-01 19 40224969 40224969 C T CLC Missense_Mutation p.G86D 0.34 tolerated(0.06) possibly_damaging(0.864) TCGA-95-7043-01 19 4028941 4028941 G A PIAS4 Missense_Mutation p.A272T 0.70 deleterious(0.03) possibly_damaging(0.901) TCGA-95-7043-01 19 40424300 40424300 C A FCGBP Nonsense_Mutation p.E635* 0.38 TCGA-95-7043-01 19 40902280 40902280 G A PRX Missense_Mutation p.P660L 0.51 deleterious(0.02) possibly_damaging(0.859) TCGA-95-7043-01 19 41223332 41223332 G C ITPKC Missense_Mutation p.A98P 0.57 deleterious_low_confidence(0) benign(0.169) TCGA-95-7043-01 19 4233293 4233293 C A EBI3 Missense_Mutation p.T123K 0.82 tolerated(0.06) benign(0.002) TCGA-95-7043-01 19 43406487 43406488 - T PSG6 3'Flank 0.16 TCGA-95-7043-01 19 43702180 43702180 G A PSG4 Silent p.S226S 0.18 TCGA-95-7043-01 19 44470421 44470421 G T ZNF221 Missense_Mutation p.C256F 0.41 deleterious(0) probably_damaging(0.997) TCGA-95-7043-01 19 45395673 45395673 G C TOMM40 Missense_Mutation p.G100R 0.39 deleterious(0) probably_damaging(0.997) TCGA-95-7043-01 19 46832551 46832551 A G HIF3A Missense_Mutation p.R510G 0.47 tolerated(0.07) benign(0.257) TCGA-95-7043-01 19 48179129 48179129 G A GLTSCR1 Missense_Mutation p.D36N 0.69 unknown(0) TCGA-95-7043-01 19 48374645 48374645 C T SULT2A1 3'UTR 0.30 TCGA-95-7043-01 19 49622182 49622182 T A C19orf73 Missense_Mutation p.H33L 0.46 tolerated_low_confidence(0.49) benign(0.004) TCGA-95-7043-01 19 50384576 50384576 G T TBC1D17 Missense_Mutation p.G124V 0.37 tolerated(0.2) possibly_damaging(0.898) TCGA-95-7043-01 19 51274689 51274689 G C GPR32 Missense_Mutation p.V278L 0.47 tolerated(0.61) benign(0.124) TCGA-95-7043-01 19 51359527 51359527 G T KLK3 Silent p.V26V 0.55 TCGA-95-7043-01 19 51742912 51742912 C A CD33 Missense_Mutation p.S355Y 0.33 tolerated(0.25) benign(0.005) TCGA-95-7043-01 19 51960828 51960828 G T SIGLEC8 Nonsense_Mutation p.S207* 0.49 TCGA-95-7043-01 19 52146581 52146581 C A SIGLEC14 3'UTR 0.42 TCGA-95-7043-01 19 52146585 52146585 G T SIGLEC14 3'UTR 0.43 TCGA-95-7043-01 19 52196137 52196137 G T SPACA6P-AS RNA 0.39 TCGA-95-7043-01 19 52272475 52272475 G A FPR2 Silent p.E188E 0.39 TCGA-95-7043-01 19 52327904 52327904 C A FPR3 Silent p.L301L 0.32 TCGA-95-7043-01 19 52619865 52619865 C G ZNF616 Silent p.T184T 0.49 TCGA-95-7043-01 19 52725455 52725455 C G PPP2R1A Missense_Mutation p.A541G 0.29 deleterious(0.01) benign(0.204) TCGA-95-7043-01 19 54185475 54185475 C T MIR520F RNA 0.46 TCGA-95-7043-01 19 54238193 54238193 C - MIR518D RNA 0.31 TCGA-95-7043-01 19 54297355 54297355 C G NLRP12 Missense_Mutation p.S1045T 0.49 tolerated(0.39) benign(0.065) TCGA-95-7043-01 19 54401363 54401364 AA GAT PRKCG Frame_Shift_Ins p.K364Dfs*11 0.20 TCGA-95-7043-01 19 54403679 54403679 C A PRKCG Nonsense_Mutation p.Y460* 0.67 TCGA-95-7043-01 19 54780277 54780277 C T LILRB2 Missense_Mutation p.G506E 0.37 deleterious(0.01) possibly_damaging(0.448) TCGA-95-7043-01 19 54875929 54875929 G T LAIR1 Missense_Mutation p.L15M 0.44 deleterious(0.01) probably_damaging(0.969) TCGA-95-7043-01 19 55020268 55020268 C A LAIR2 Missense_Mutation p.P130T 0.39 tolerated(0.08) benign(0.058) TCGA-95-7043-01 19 55341671 55341671 A T KIR3DL1 Missense_Mutation p.I426F 0.53 deleterious(0.01) benign(0.042) TCGA-95-7043-01 19 55424185 55424185 C A NCR1 Silent p.A287A 0.39 TCGA-95-7043-01 19 55665576 55665576 T AG TNNI3 Splice_Site p.X125_splice 0.40 TCGA-95-7043-01 19 55889205 55889205 T A TMEM190 Missense_Mutation p.W86R 0.25 deleterious(0.02) probably_damaging(0.934) TCGA-95-7043-01 19 56370165 56370165 A T NLRP4 Missense_Mutation p.H469L 0.28 tolerated(0.08) benign(0.109) TCGA-95-7043-01 19 57335793 57335793 C G PEG3 Silent p.P77P 0.81 TCGA-95-7043-01 19 57642182 57642182 T C USP29 Silent p.N713N 0.92 TCGA-95-7043-01 19 58118528 58118528 G A ZNF530 Silent p.R545R 0.30 TCGA-95-7043-01 19 58146122 58146122 G T ZNF211 Silent p.L85L 0.46 TCGA-95-7043-01 19 58189661 58189661 T A ZSCAN4 Silent p.P230P 0.35 TCGA-95-7043-01 19 58190161 58190161 C A ZSCAN4 Missense_Mutation p.T397K 0.53 tolerated(0.93) benign(0.013) TCGA-95-7043-01 19 58262153 58262153 G T AC003006.7 Missense_Mutation p.G12C 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-95-7043-01 19 6821692 6821692 G T VAV1 Splice_Site p.X127_splice 0.73 TCGA-95-7043-01 19 7794773 7794773 C A CLEC4G Missense_Mutation p.R226M 0.75 deleterious(0) probably_damaging(0.989) TCGA-95-7043-01 19 9066733 9066733 G T MUC16 Missense_Mutation p.L6905I 0.77 unknown(0) TCGA-95-7043-01 19 9085554 9085554 C T MUC16 Silent p.T2087T 0.78 TCGA-95-7043-01 19 9089641 9089641 G A MUC16 Missense_Mutation p.P725L 0.81 unknown(0) TCGA-95-7043-01 19 9090222 9090222 G T MUC16 Silent p.P531P 0.73 TCGA-95-7043-01 1 103347291 103347291 G T COL11A1 Missense_Mutation p.P1668T 0.83 unknown(0) TCGA-95-7043-01 1 107691317 107691317 G A NTNG1 Silent p.K34K 0.76 TCGA-95-7043-01 1 109428168 109428168 G T GPSM2 Missense_Mutation p.M8I 0.73 tolerated_low_confidence(0.16) benign(0.072) TCGA-95-7043-01 1 110551754 110551754 C T AHCYL1 Silent p.D73D 0.88 TCGA-95-7043-01 1 110884751 110884751 G - RBM15 Frame_Shift_Del p.G910Afs*41 0.49 TCGA-95-7043-01 1 118526493 118526493 G T SPAG17 Missense_Mutation p.T1938K 0.80 tolerated(0.39) benign(0.199) TCGA-95-7043-01 1 11983315 11983315 T A KIAA2013 Missense_Mutation p.Q422L 0.92 deleterious(0.01) benign(0.237) TCGA-95-7043-01 1 12091341 12091341 G T MIIP Missense_Mutation p.D321Y 0.79 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 1 13695719 13695719 G T PRAMEF19 Silent p.R416R 0.60 TCGA-95-7043-01 1 149882375 149882375 C A SV2A Intron 0.44 TCGA-95-7043-01 1 149884986 149884986 C A SV2A Missense_Mutation p.R136L 0.46 tolerated(0.09) unknown(0) TCGA-95-7043-01 1 149885396 149885396 G T SV2A 5'UTR 0.45 TCGA-95-7043-01 1 150679041 150679041 C T HORMAD1 Silent p.E264E 0.33 TCGA-95-7043-01 1 151234661 151234661 G C PSMD4 Silent p.R17R 0.44 TCGA-95-7043-01 1 152128814 152128814 C T RPTN Missense_Mutation p.G254E 0.37 deleterious(0.03) possibly_damaging(0.691) TCGA-95-7043-01 1 152192465 152192465 C T HRNR Missense_Mutation p.R547Q 0.50 unknown(0) TCGA-95-7043-01 1 152284714 152284714 G C FLG Missense_Mutation p.S883C 0.34 probably_damaging(0.996) TCGA-95-7043-01 1 152957793 152957793 C A SPRR1A Silent p.P29P 0.52 TCGA-95-7043-01 1 153012687 153012687 G T SPRR2D Missense_Mutation p.P46T 0.51 deleterious_low_confidence(0) unknown(0) TCGA-95-7043-01 1 153043211 153043211 G T SPRR2B Silent p.P35P 0.36 TCGA-95-7043-01 1 153640497 153640497 C A ILF2 Silent p.V90V 0.30 TCGA-95-7043-01 1 153790011 153790011 C A GATAD2B Missense_Mutation p.S246I 0.38 tolerated(0.21) benign(0.194) TCGA-95-7043-01 1 154422387 154422387 G C IL6R Missense_Mutation p.A333P 0.42 tolerated(0.19) possibly_damaging(0.828) TCGA-95-7043-01 1 154437778 154437778 G T IL6R Silent p.S443S 0.42 TCGA-95-7043-01 1 155252500 155252500 G T HCN3 Nonsense_Mutation p.E193* 0.34 TCGA-95-7043-01 1 156642986 156642986 C A NES Nonsense_Mutation p.E332* 0.32 TCGA-95-7043-01 1 157494099 157494099 G A FCRL5 Missense_Mutation p.R737C 0.36 deleterious(0.03) possibly_damaging(0.856) TCGA-95-7043-01 1 157555991 157555991 C A FCRL4 Missense_Mutation p.V368F 0.46 deleterious(0.01) benign(0.383) TCGA-95-7043-01 1 158368578 158368578 G T OR10T2 Missense_Mutation p.L227M 0.38 deleterious(0.02) probably_damaging(1) TCGA-95-7043-01 1 158435954 158435954 G T OR10K1 Missense_Mutation p.M201I 0.53 tolerated(1) benign(0.004) TCGA-95-7043-01 1 15844622 15844622 C A CASP9 Missense_Mutation p.G134V 0.72 tolerated(0.14) benign(0.382) TCGA-95-7043-01 1 158548787 158548787 G A OR10X1 Silent p.I301I 0.53 TCGA-95-7043-01 1 158577002 158577002 G A OR10Z1 Silent p.V258V 0.55 TCGA-95-7043-01 1 158585084 158585084 C A SPTA1 Missense_Mutation p.G2237V 0.35 deleterious(0) probably_damaging(0.991) TCGA-95-7043-01 1 158639547 158639547 A T SPTA1 Silent p.I543I 0.37 TCGA-95-7043-01 1 158651381 158651381 C T SPTA1 Missense_Mutation p.R156Q 0.37 tolerated(1) benign(0.006) TCGA-95-7043-01 1 158669545 158669545 C A OR6K2 Nonsense_Mutation p.E300* 0.35 TCGA-95-7043-01 1 158735961 158735961 G A OR6N1 Missense_Mutation p.P171L 0.41 deleterious(0.02) benign(0.012) TCGA-95-7043-01 1 158911776 158911776 C A PYHIN1 Missense_Mutation p.P197T 0.52 tolerated(0.81) benign(0.007) TCGA-95-7043-01 1 161970018 161970018 G T OLFML2B Silent p.P278P 0.38 TCGA-95-7043-01 1 161989882 161989882 A T OLFML2B Missense_Mutation p.C89S 0.54 deleterious(0) probably_damaging(1) TCGA-95-7043-01 1 16455969 16455969 C A EPHA2 Missense_Mutation p.G929C 0.81 deleterious(0) probably_damaging(1) TCGA-95-7043-01 1 16535535 16535535 T A ARHGEF19 Silent p.P5P 0.78 TCGA-95-7043-01 1 166904641 166904641 G A ILDR2 Silent p.I259I 0.56 TCGA-95-7043-01 1 168054915 168054915 C T GPR161 Missense_Mutation p.E502K 0.42 tolerated_low_confidence(0.12) benign(0.158) TCGA-95-7043-01 1 171083478 171083478 C T FMO3 Missense_Mutation p.R387C 0.50 deleterious(0.01) benign(0.344) TCGA-95-7043-01 1 175049430 175049430 C A TNN Missense_Mutation p.Q306K 0.27 tolerated(0.09) benign(0.068) TCGA-95-7043-01 1 175331857 175331857 G T TNR Missense_Mutation p.S932R 0.45 deleterious(0.03) possibly_damaging(0.589) TCGA-95-7043-01 1 175360456 175360456 C A TNR Missense_Mutation p.R492L 0.37 deleterious(0.03) probably_damaging(1) TCGA-95-7043-01 1 176738765 176738765 C G PAPPA2 Missense_Mutation p.S1449C 0.44 deleterious(0.05) possibly_damaging(0.717) TCGA-95-7043-01 1 176993816 176993816 G T ASTN1 Silent p.I391I 0.47 TCGA-95-7043-01 1 177001871 177001871 C T ASTN1 Missense_Mutation p.E196K 0.45 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-95-7043-01 1 17707550 17707550 G C PADI6 RNA 0.62 TCGA-95-7043-01 1 177133544 177133544 G T ASTN1 Missense_Mutation p.P90H 0.33 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-95-7043-01 1 178802638 178802638 G T RALGPS2 Missense_Mutation p.R187I 0.41 deleterious(0) probably_damaging(1) TCGA-95-7043-01 1 179338016 179338016 C A AXDND1 Missense_Mutation p.P60H 0.37 deleterious(0) probably_damaging(0.953) TCGA-95-7043-01 1 179520369 179520369 G T NPHS2 Missense_Mutation p.P364Q 0.29 deleterious(0.05) possibly_damaging(0.764) TCGA-95-7043-01 1 179544726 179544726 C A NPHS2 Missense_Mutation p.G92C 0.45 deleterious(0) probably_damaging(0.997) TCGA-95-7043-01 1 181689992 181689992 G C CACNA1E Splice_Site p.X652_splice 0.50 TCGA-95-7043-01 1 183255865 183255865 C - NMNAT2 Frame_Shift_Del p.G127Dfs*50 0.29 TCGA-95-7043-01 1 184446562 184446562 T A C1orf21 5'UTR 0.60 TCGA-95-7043-01 1 186083236 186083236 C A HMCN1 Missense_Mutation p.L3753I 0.49 probably_damaging(0.994) TCGA-95-7043-01 1 186310292 186310292 C T TPR Splice_Site p.X1297_splice 0.55 TCGA-95-7043-01 1 19166267 19166267 G A TAS1R2 Silent p.A782A 0.56 TCGA-95-7043-01 1 19166384 19166384 G A TAS1R2 Silent p.F743F 0.87 TCGA-95-7043-01 1 1956994 1956994 G A GABRD Missense_Mutation p.R96Q 0.82 deleterious(0.03) possibly_damaging(0.862) TCGA-95-7043-01 1 196227369 196227369 C A KCNT2 Missense_Mutation p.V1056L 0.46 deleterious(0) probably_damaging(0.986) TCGA-95-7043-01 1 196748352 196748352 G C CFHR3 Missense_Mutation p.R40T 0.43 tolerated(0.09) probably_damaging(0.965) TCGA-95-7043-01 1 197128671 197128671 G A ZBTB41 Nonsense_Mutation p.R850* 0.35 TCGA-95-7043-01 1 197890707 197890707 C A LHX9 Missense_Mutation p.N217K 0.43 tolerated(0.09) possibly_damaging(0.489) TCGA-95-7043-01 1 202462446 202462446 G T PPP1R12B Splice_Site p.X715_splice 0.95 TCGA-95-7043-01 1 203798748 203798748 A G ZC3H11A Silent p.V156V 0.83 TCGA-95-7043-01 1 204588013 204588013 G T LRRN2 Missense_Mutation p.P370T 0.74 deleterious(0) probably_damaging(1) TCGA-95-7043-01 1 204957917 204957917 C A NFASC Missense_Mutation p.P917Q 0.80 tolerated(0.06) unknown(0) TCGA-95-7043-01 1 209933636 209933636 C A TRAF3IP3 Silent p.A84A 0.64 TCGA-95-7043-01 1 210577926 210577926 C T HHAT Missense_Mutation p.S197L 0.88 tolerated(0.29) benign(0.103) TCGA-95-7043-01 1 222700385 222700385 C A HHIPL2 Silent p.L577L 0.82 TCGA-95-7043-01 1 226032925 226032925 C A EPHX1 Missense_Mutation p.F415L 0.68 tolerated(0.33) benign(0) TCGA-95-7043-01 1 227920667 227920667 C A JMJD4 Missense_Mutation p.R341L 0.77 tolerated(0.32) benign(0.008) TCGA-95-7043-01 1 231342533 231342533 G A TRIM67 Missense_Mutation p.D606N 0.82 deleterious(0.01) benign(0.305) TCGA-95-7043-01 1 242021860 242021860 G T EXO1 Missense_Mutation p.R199L 0.88 deleterious(0.04) probably_damaging(0.985) TCGA-95-7043-01 1 243727068 243727068 G T AKT3 Missense_Mutation p.A301D 0.84 tolerated(0.67) probably_damaging(0.939) TCGA-95-7043-01 1 247587977 247587977 T - NLRP3 Frame_Shift_Del p.I411Tfs*12 0.47 TCGA-95-7043-01 1 247921270 247921270 C G OR1C1 Missense_Mutation p.G147R 0.77 tolerated(0.3) benign(0.045) TCGA-95-7043-01 1 248262901 248262901 C A OR2L13 Missense_Mutation p.T75N 0.82 tolerated(0.19) benign(0.185) TCGA-95-7043-01 1 248343692 248343692 C T OR2M2 Silent p.L135L 0.75 TCGA-95-7043-01 1 248737718 248737718 C - OR2T34 Frame_Shift_Del p.G114Efs*27 0.26 TCGA-95-7043-01 1 25880543 25880543 G A LDLRAP1 Silent p.R73R 0.81 TCGA-95-7043-01 1 29508206 29508206 C A SRSF4 Missense_Mutation p.R20L 0.88 deleterious(0) probably_damaging(0.976) TCGA-95-7043-01 1 33150085 33150085 G C RBBP4 3'UTR 0.75 TCGA-95-7043-01 1 3350408 3350408 C A PRDM16 3'UTR 0.80 TCGA-95-7043-01 1 37346444 37346444 T C GRIK3 Missense_Mutation p.Q114R 0.58 tolerated(0.1) benign(0.052) TCGA-95-7043-01 1 37356641 37356641 G T GRIK3 Missense_Mutation p.H58N 0.80 tolerated(0.2) benign(0.097) TCGA-95-7043-01 1 42049210 42049210 C A HIVEP3 Missense_Mutation p.G420V 0.77 probably_damaging(1) TCGA-95-7043-01 1 43891740 43891740 T A SZT2 Missense_Mutation p.H987Q 0.89 tolerated(0.18) benign(0.085) TCGA-95-7043-01 1 43891741 43891741 G T SZT2 Nonsense_Mutation p.E988* 0.94 TCGA-95-7043-01 1 55075530 55075530 C T FAM151A Missense_Mutation p.G390D 0.14 tolerated(0.32) benign(0.038) TCGA-95-7043-01 1 6214763 6214763 G A CHD5 Silent p.P234P 0.90 TCGA-95-7043-01 1 66075675 66075675 G T LEPR Missense_Mutation p.V600F 0.77 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 1 67263852 67263852 C A INSL5 Missense_Mutation p.K84N 0.85 tolerated(0.1) possibly_damaging(0.845) TCGA-95-7043-01 1 68912412 68912412 G A RPE65 Missense_Mutation p.H76Y 0.88 deleterious(0.02) benign(0.215) TCGA-95-7043-01 1 70504652 70504652 G C LRRC7 Missense_Mutation p.G1011R 0.76 deleterious(0.04) possibly_damaging(0.893) TCGA-95-7043-01 1 70504653 70504653 G T LRRC7 Missense_Mutation p.G1011V 0.75 tolerated(0.1) possibly_damaging(0.728) TCGA-95-7043-01 1 75097512 75097512 G T C1orf173 Missense_Mutation p.P235H 0.71 deleterious(0) probably_damaging(0.991) TCGA-95-7043-01 1 75677192 75677192 C T SLC44A5 Missense_Mutation p.V670I 0.71 deleterious(0.01) possibly_damaging(0.665) TCGA-95-7043-01 1 76397963 76397963 G T ASB17 Missense_Mutation p.T5N 0.64 tolerated_low_confidence(0.31) benign(0) TCGA-95-7043-01 1 8073505 8073505 T A ERRFI1 Missense_Mutation p.N385I 0.86 deleterious(0) possibly_damaging(0.878) TCGA-95-7043-01 1 86313345 86313345 G C COL24A1 Intron 0.83 TCGA-95-7043-01 1 86591275 86591275 G T COL24A1 Nonsense_Mutation p.Y248* 0.82 TCGA-95-7043-01 1 86591289 86591289 G T COL24A1 Missense_Mutation p.Q244K 0.78 tolerated(0.1) benign(0.014) TCGA-95-7043-01 1 87036808 87036808 C A CLCA4 Missense_Mutation p.L411M 0.73 deleterious(0.01) probably_damaging(0.927) TCGA-95-7043-01 1 92181945 92181945 A - TGFBR3 Frame_Shift_Del p.C572Afs*6 0.47 TCGA-95-7043-01 1 9324492 9324492 C A H6PD Missense_Mutation p.P647H 0.75 deleterious(0) probably_damaging(1) TCGA-95-7043-01 1 93711761 93711761 G T CCDC18 Missense_Mutation p.Q1080H 0.72 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 1 99767365 99767365 G T LPPR4 Missense_Mutation p.C293F 0.78 deleterious(0) probably_damaging(0.972) TCGA-95-7043-01 20 13561609 13561609 C G TASP1 Silent p.S141S 0.39 TCGA-95-7043-01 20 13775574 13775574 G T NDUFAF5 Missense_Mutation p.V156F 0.33 tolerated(0.06) benign(0.22) TCGA-95-7043-01 20 1629907 1629907 C T SIRPG Missense_Mutation p.R74Q 0.25 tolerated(0.13) benign(0.442) TCGA-95-7043-01 20 18143305 18143305 G T CSRP2BP Missense_Mutation p.V463L 0.55 tolerated(1) benign(0.002) TCGA-95-7043-01 20 18794586 18794586 G C SCP2D1 Missense_Mutation p.E43Q 0.31 tolerated(1) benign(0.001) TCGA-95-7043-01 20 19701802 19701802 G T SLC24A3 3'UTR 0.57 TCGA-95-7043-01 20 21494243 21494243 T A NKX2-2 Missense_Mutation p.N22I 0.49 deleterious(0.01) possibly_damaging(0.571) TCGA-95-7043-01 20 23016582 23016582 G - SSTR4 Frame_Shift_Del p.A155Rfs*108 0.36 TCGA-95-7043-01 20 29960910 29960910 T G DEFB118 Silent p.V103V 0.39 TCGA-95-7043-01 20 29976905 29976905 G T DEFB119 Missense_Mutation p.H64N 0.43 deleterious(0.04) benign(0.009) TCGA-95-7043-01 20 30064330 30064330 C G REM1 Missense_Mutation p.H28D 0.49 tolerated(0.36) benign(0.009) TCGA-95-7043-01 20 30584609 30584609 C A XKR7 Silent p.V363V 0.37 TCGA-95-7043-01 20 3146898 3146898 G A LZTS3 Missense_Mutation p.R190W 0.29 deleterious(0.02) probably_damaging(0.973) TCGA-95-7043-01 20 31630680 31630680 C A BPIFB6 Silent p.V416V 0.70 TCGA-95-7043-01 20 31659958 31659958 G C BPIFB3 Missense_Mutation p.A437P 0.39 deleterious(0) possibly_damaging(0.544) TCGA-95-7043-01 20 33879855 33879855 C A FAM83C Missense_Mutation p.V85L 0.28 tolerated(0.17) possibly_damaging(0.578) TCGA-95-7043-01 20 34535571 34535571 G T PHF20 3'UTR 0.65 TCGA-95-7043-01 20 35060954 35060954 C A DLGAP4 Silent p.P278P 0.59 TCGA-95-7043-01 20 35386978 35386978 C T DSN1 Missense_Mutation p.M211I 0.53 tolerated(0.48) benign(0.068) TCGA-95-7043-01 20 37210018 37210018 G T ADIG Splice_Site p.X42_splice 0.23 TCGA-95-7043-01 20 39974574 39974574 G T LPIN3 Missense_Mutation p.R44L 0.55 deleterious(0.04) benign(0.12) TCGA-95-7043-01 20 39974575 39974575 G T LPIN3 Silent p.R44R 0.56 TCGA-95-7043-01 20 40116427 40116427 C A CHD6 Nonsense_Mutation p.G627* 0.43 TCGA-95-7043-01 20 41101007 41101007 C T PTPRT Missense_Mutation p.R450Q 0.53 tolerated(0.07) possibly_damaging(0.47) TCGA-95-7043-01 20 43246994 43246994 A T PKIG Missense_Mutation p.T74S 0.45 tolerated(0.32) benign(0.026) TCGA-95-7043-01 20 43561038 43561038 C - PABPC1L Frame_Shift_Del p.R434Gfs*48 0.23 TCGA-95-7043-01 20 44187578 44187578 C - WFDC8 Frame_Shift_Del p.D64Tfs*36 0.28 TCGA-95-7043-01 20 44518888 44518888 C G NEURL2 Splice_Site p.X248_splice 0.46 TCGA-95-7043-01 20 44574995 44574995 G A PCIF1 Missense_Mutation p.D529N 0.33 deleterious(0) probably_damaging(1) TCGA-95-7043-01 20 44845556 44845556 G T CDH22 Missense_Mutation p.D249E 0.32 deleterious(0) benign(0.081) TCGA-95-7043-01 20 45853080 45853080 G A ZMYND8 Missense_Mutation p.A1003V 0.27 tolerated(0.05) probably_damaging(0.999) TCGA-95-7043-01 20 45853081 45853081 C A ZMYND8 Missense_Mutation p.A1003S 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-95-7043-01 20 45853099 45853099 T A ZMYND8 Nonsense_Mutation p.K997* 0.26 TCGA-95-7043-01 20 49195123 49195123 G A PTPN1 Missense_Mutation p.G220D 0.32 deleterious(0.02) probably_damaging(0.956) TCGA-95-7043-01 20 50048654 50048654 C A NFATC2 Missense_Mutation p.G891V 0.30 tolerated(0.1) probably_damaging(0.99) TCGA-95-7043-01 20 50255930 50255930 C G ATP9A Missense_Mutation p.Q540H 0.33 tolerated(0.24) benign(0.008) TCGA-95-7043-01 20 50803371 50803371 C A ZFP64 Missense_Mutation p.V96F 0.40 tolerated(0.21) probably_damaging(0.979) TCGA-95-7043-01 20 57768079 57768079 G T ZNF831 Missense_Mutation p.G669C 0.45 deleterious(0.01) probably_damaging(0.95) TCGA-95-7043-01 20 58564199 58564199 G T CDH26 Missense_Mutation p.D422Y 0.39 tolerated(0.3) probably_damaging(0.929) TCGA-95-7043-01 20 60348060 60348060 C T CDH4 Missense_Mutation p.P133L 0.24 tolerated(0.32) benign(0) TCGA-95-7043-01 20 61512609 61512609 C G DIDO1 Missense_Mutation p.A1567P 0.58 probably_damaging(0.951) TCGA-95-7043-01 20 61941222 61941222 G T COL20A1 Missense_Mutation p.K406N 0.29 deleterious(0) possibly_damaging(0.461) TCGA-95-7043-01 20 62046337 62046337 T G KCNQ2 Missense_Mutation p.K482Q 0.38 deleterious(0.02) possibly_damaging(0.491) TCGA-95-7043-01 20 62187822 62187822 A T C20orf195 Missense_Mutation p.D269V 0.30 tolerated(1) benign(0.02) TCGA-95-7043-01 20 62863576 62863576 G T MYT1 Missense_Mutation p.R912M 0.34 probably_damaging(1) TCGA-95-7043-01 20 8720994 8720994 A T PLCB1 Missense_Mutation p.Y771F 0.29 tolerated(0.11) probably_damaging(0.967) TCGA-95-7043-01 21 11039119 11039119 C T BAGE2 RNA 0.05 TCGA-95-7043-01 21 11047556 11047556 C T BAGE2 RNA 0.06 TCGA-95-7043-01 21 31588042 31588042 C A CLDN8 Missense_Mutation p.D68Y 0.74 deleterious(0) probably_damaging(1) TCGA-95-7043-01 21 33678889 33678889 C A MRAP Intron 0.82 TCGA-95-7043-01 21 36088700 36088700 A G CLIC6 Missense_Mutation p.R661G 0.77 deleterious(0) probably_damaging(0.995) TCGA-95-7043-01 21 43711290 43711290 C T ABCG1 Silent p.D506D 0.80 TCGA-95-7043-01 21 47540982 47540982 G A COL6A2 Missense_Mutation p.R468Q 0.58 tolerated(0.82) benign(0.018) TCGA-95-7043-01 22 17073042 17073042 C A CCT8L2 Silent p.R133R 0.28 TCGA-95-7043-01 22 17073043 17073043 C A CCT8L2 Missense_Mutation p.R133L 0.30 tolerated(1) probably_damaging(0.992) TCGA-95-7043-01 22 18300138 18300138 G A MICAL3 Silent p.T1763T 0.33 TCGA-95-7043-01 22 20229571 20229571 C A RTN4R Missense_Mutation p.R362L 0.39 deleterious(0.05) possibly_damaging(0.647) TCGA-95-7043-01 22 22143003 22143003 T A MAPK1 Missense_Mutation p.D235V 0.39 deleterious(0.01) probably_damaging(0.96) TCGA-95-7043-01 22 24323170 24323170 C T GSTT2 Silent p.I48I 0.33 TCGA-95-7043-01 22 26110499 26110499 G T ADRBK2 Missense_Mutation p.R539M 0.43 deleterious(0) benign(0.382) TCGA-95-7043-01 22 31741545 31741545 T C PATZ1 Missense_Mutation p.Y15C 0.39 deleterious_low_confidence(0) benign(0.09) TCGA-95-7043-01 22 36055215 36055215 A C APOL6 Missense_Mutation p.K202Q 0.31 deleterious(0.01) probably_damaging(0.955) TCGA-95-7043-01 22 38120968 38120968 G T TRIOBP Missense_Mutation p.R802I 0.36 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-95-7043-01 22 38155203 38155203 G C TRIOBP Missense_Mutation p.G2086R 0.37 deleterious(0.03) probably_damaging(1) TCGA-95-7043-01 22 38168672 38168672 G T TRIOBP Missense_Mutation p.R2334L 0.43 deleterious(0.01) probably_damaging(0.994) TCGA-95-7043-01 22 39125575 39125575 G T GTPBP1 Missense_Mutation p.G609C 0.68 deleterious(0.01) benign(0.417) TCGA-95-7043-01 22 40060149 40060149 C A CACNA1I Silent p.G1217G 0.38 TCGA-95-7043-01 22 41566409 41566409 G C EP300 Splice_Site p.X1429_splice 0.11 TCGA-95-7043-01 22 41652743 41652743 G A RANGAP1 Missense_Mutation p.A287V 0.31 tolerated(0.33) benign(0.102) TCGA-95-7043-01 22 42204948 42204948 G T CCDC134 Missense_Mutation p.M18I 0.29 tolerated_low_confidence(0.42) benign(0.003) TCGA-95-7043-01 22 43088836 43088836 C T A4GALT 3'UTR 0.60 TCGA-95-7043-01 22 43570314 43570315 CG A TTLL12 Frame_Shift_Del p.R377Wfs*104 0.26 TCGA-95-7043-01 22 45681845 45681845 G T UPK3A Missense_Mutation p.A26S 0.53 deleterious(0.04) probably_damaging(0.999) TCGA-95-7043-01 22 45745638 45745638 C A SMC1B Missense_Mutation p.A1156S 0.29 deleterious(0) probably_damaging(0.986) TCGA-95-7043-01 22 46685307 46685307 G T TTC38 Missense_Mutation p.G364V 0.33 deleterious(0.02) possibly_damaging(0.586) TCGA-95-7043-01 22 50722093 50722093 C T PLXNB2 Silent p.Q836Q 0.31 TCGA-95-7043-01 2 102792910 102792910 A T IL1R1 Silent p.S467S 0.84 TCGA-95-7043-01 2 110065636 110065636 T A SH3RF3 Silent p.S613S 0.81 TCGA-95-7043-01 2 11053962 11053962 C G KCNF1 Silent p.L470L 0.28 TCGA-95-7043-01 2 11053984 11053984 C T KCNF1 Missense_Mutation p.P478S 0.26 tolerated_low_confidence(0.11) benign(0.115) TCGA-95-7043-01 2 11716613 11716613 G T GREB1 Missense_Mutation p.A197S 0.44 tolerated(1) benign(0.304) TCGA-95-7043-01 2 11738826 11738826 C G GREB1 Missense_Mutation p.L725V 0.41 tolerated(0.07) benign(0.021) TCGA-95-7043-01 2 11780520 11780520 C G GREB1 Missense_Mutation p.F1930L 0.31 deleterious(0.02) probably_damaging(0.995) TCGA-95-7043-01 2 121746742 121746742 G C GLI2 Missense_Mutation p.Q1084H 0.86 tolerated(0.11) benign(0.003) TCGA-95-7043-01 2 1251116 1251116 G T SNTG2 Missense_Mutation p.W302C 0.36 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 2 125530389 125530389 C A CNTNAP5 Silent p.I848I 0.91 TCGA-95-7043-01 2 128341834 128341834 C A MYO7B Missense_Mutation p.P494H 0.88 tolerated(0.1) benign(0.119) TCGA-95-7043-01 2 128341835 128341835 C T MYO7B Silent p.P494P 0.88 TCGA-95-7043-01 2 128351163 128351163 G T MYO7B Missense_Mutation p.V730L 0.83 tolerated(0.3) benign(0.002) TCGA-95-7043-01 2 131487177 131487177 C A GPR148 Silent p.I151I 0.86 TCGA-95-7043-01 2 131520865 131520865 C T AMER3 Missense_Mutation p.T407I 0.94 tolerated(0.12) possibly_damaging(0.876) TCGA-95-7043-01 2 131521632 131521632 G T AMER3 Nonsense_Mutation p.G663* 0.94 TCGA-95-7043-01 2 135982056 135982056 C A ZRANB3 Silent p.V730V 0.84 TCGA-95-7043-01 2 136594685 136594685 C G LCT Missense_Mutation p.G19R 0.90 deleterious_low_confidence(0) possibly_damaging(0.779) TCGA-95-7043-01 2 152320044 152320044 G A RIF1 Missense_Mutation p.C1337Y 0.89 tolerated(0.08) benign(0.064) TCGA-95-7043-01 2 152534533 152534533 C A NEB Missense_Mutation p.D1142Y 0.78 probably_damaging(0.996) TCGA-95-7043-01 2 15359018 15359018 C A NBAS Missense_Mutation p.R2104L 0.38 deleterious(0.03) benign(0.131) TCGA-95-7043-01 2 159033120 159033120 T C CCDC148 Silent p.A514A 0.95 TCGA-95-7043-01 2 163253371 163253371 C A KCNH7 Missense_Mutation p.C831F 0.84 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 2 1652140 1652140 C A PXDN Nonsense_Mutation p.E1138* 0.43 TCGA-95-7043-01 2 165353977 165353977 C A GRB14 Silent p.L376L 0.85 TCGA-95-7043-01 2 166179881 166179881 C A SCN2A Missense_Mutation p.S629R 0.69 deleterious(0.01) probably_damaging(0.986) TCGA-95-7043-01 2 168104538 168104538 T C XIRP2 Silent p.L2212L 0.88 TCGA-95-7043-01 2 170487403 170487403 A G PPIG Missense_Mutation p.T223A 0.90 tolerated(0.4) unknown(0) TCGA-95-7043-01 2 179436924 179436924 G T TTN Silent p.G24645G 0.93 TCGA-95-7043-01 2 179640216 179640216 G A TTN Silent p.Y2125Y 0.80 TCGA-95-7043-01 2 183595774 183595774 A G DNAJC10 Missense_Mutation p.I249V 0.69 tolerated(0.25) benign(0.05) TCGA-95-7043-01 2 185800922 185800922 G T ZNF804A Missense_Mutation p.V267L 0.82 tolerated(0.17) benign(0.031) TCGA-95-7043-01 2 185803644 185803644 C G ZNF804A Missense_Mutation p.A1174G 0.89 tolerated(0.11) probably_damaging(0.968) TCGA-95-7043-01 2 186672738 186672738 C A FSIP2 Silent p.T6324T 0.96 TCGA-95-7043-01 2 18767604 18767604 G T NT5C1B Silent p.R118R 0.88 TCGA-95-7043-01 2 1926727 1926727 G T MYT1L Missense_Mutation p.H272N 0.41 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-95-7043-01 2 192818493 192818493 G T TMEFF2 Missense_Mutation p.P314T 0.92 tolerated(0.2) benign(0.039) TCGA-95-7043-01 2 206165394 206165394 G T PARD3B Missense_Mutation p.G714C 0.81 deleterious(0) probably_damaging(1) TCGA-95-7043-01 2 212578300 212578300 C A ERBB4 Silent p.G319G 0.95 TCGA-95-7043-01 2 220167434 220167434 C A PTPRN Missense_Mutation p.G168V 0.87 tolerated(0.06) benign(0.394) TCGA-95-7043-01 2 220371037 220371037 G C GMPPA Missense_Mutation p.R352P 0.85 deleterious(0) probably_damaging(1) TCGA-95-7043-01 2 220502304 220502304 T G SLC4A3 Missense_Mutation p.V873G 0.88 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 2 224463757 224463757 G C SCG2 Missense_Mutation p.Q82E 0.88 tolerated(0.13) possibly_damaging(0.575) TCGA-95-7043-01 2 225378314 225378314 C T CUL3 Missense_Mutation p.G194D 0.87 deleterious(0) probably_damaging(0.987) TCGA-95-7043-01 2 227662185 227662185 C T IRS1 Missense_Mutation p.G424S 0.85 tolerated(0.05) probably_damaging(0.999) TCGA-95-7043-01 2 228881720 228881720 C A SPHKAP Missense_Mutation p.G1284C 0.89 deleterious(0) probably_damaging(0.997) TCGA-95-7043-01 2 228882836 228882836 C G SPHKAP Missense_Mutation p.A912P 0.87 tolerated(0.18) benign(0.019) TCGA-95-7043-01 2 232597568 232597568 T A PDE6D 3'UTR 0.86 TCGA-95-7043-01 2 233897540 233897540 C G NEU2 Silent p.V53V 0.85 TCGA-95-7043-01 2 237308121 237308121 T C IQCA1 Missense_Mutation p.E382G 0.75 tolerated(0.07) benign(0.266) TCGA-95-7043-01 2 238303482 238303482 G T COL6A3 Missense_Mutation p.H153N 0.91 possibly_damaging(0.484) TCGA-95-7043-01 2 238727147 238727147 G T RBM44 Missense_Mutation p.D530Y 0.20 deleterious(0) probably_damaging(0.957) TCGA-95-7043-01 2 242135200 242135200 C A ANO7 Missense_Mutation p.H137Q 0.76 tolerated(0.15) benign(0.04) TCGA-95-7043-01 2 242141710 242141710 C A ANO7 Silent p.P292P 0.87 TCGA-95-7043-01 2 27801652 27801652 C T C2orf16 Missense_Mutation p.T738I 0.34 deleterious(0.04) possibly_damaging(0.714) TCGA-95-7043-01 2 28855821 28855821 C A PLB1 Missense_Mutation p.T1338N 0.34 deleterious(0.04) benign(0.219) TCGA-95-7043-01 2 29164364 29164364 A T WDR43 Missense_Mutation p.Q553L 0.63 deleterious(0.01) probably_damaging(0.925) TCGA-95-7043-01 2 32476135 32476135 C G NLRC4 Missense_Mutation p.K266N 0.52 deleterious(0) probably_damaging(0.997) TCGA-95-7043-01 2 32673862 32673862 G T BIRC6 Splice_Site p.X1495_splice 0.75 TCGA-95-7043-01 2 33585793 33585793 G T LTBP1 Missense_Mutation p.G1377V 0.34 deleterious(0) probably_damaging(0.994) TCGA-95-7043-01 2 33614329 33614329 G T LTBP1 Missense_Mutation p.S1597I 0.47 tolerated(0.31) benign(0.342) TCGA-95-7043-01 2 36691775 36691775 G T CRIM1 Missense_Mutation p.C323F 0.44 deleterious(0) probably_damaging(0.982) TCGA-95-7043-01 2 39088829 39088829 C A DHX57 Missense_Mutation p.L241F 0.40 tolerated(0.2) benign(0.14) TCGA-95-7043-01 2 39944284 39944284 T G TMEM178A Missense_Mutation p.C263G 0.40 tolerated(0.97) benign(0.005) TCGA-95-7043-01 2 44055222 44055222 G C ABCG5 Missense_Mutation p.S178R 0.43 tolerated(0.2) benign(0.292) TCGA-95-7043-01 2 44099212 44099212 T A ABCG8 Silent p.R354R 0.84 TCGA-95-7043-01 2 46588229 46588229 G T EPAS1 Missense_Mutation p.R260I 0.89 deleterious(0) probably_damaging(0.911) TCGA-95-7043-01 2 47382370 47382370 G A C2orf61 Silent p.A7A 0.35 TCGA-95-7043-01 2 56420333 56420333 G T CCDC85A Missense_Mutation p.G333V 0.33 tolerated_low_confidence(0.2) possibly_damaging(0.478) TCGA-95-7043-01 2 60679770 60679770 G T BCL11A 3'Flank 0.87 TCGA-95-7043-01 2 68415683 68415683 T C PPP3R1 Missense_Mutation p.I61M 0.37 deleterious(0) probably_damaging(0.955) TCGA-95-7043-01 2 69769699 69769699 G A AAK1 Missense_Mutation p.R164C 0.47 deleterious(0.03) unknown(0) TCGA-95-7043-01 2 71797024 71797024 G T DYSF Missense_Mutation p.G980V 0.24 deleterious(0.01) possibly_damaging(0.534) TCGA-95-7043-01 2 71838723 71838723 C T DYSF Silent p.P1396P 0.44 TCGA-95-7043-01 2 77748820 77748820 C - LRRTM4 5'UTR 0.32 TCGA-95-7043-01 2 79386515 79386515 G T REG3A Missense_Mutation p.A6D 0.48 deleterious(0.04) benign(0.041) TCGA-95-7043-01 2 85049164 85049164 C A TRABD2A Silent p.R416R 0.44 TCGA-95-7043-01 2 85049165 85049165 C T TRABD2A Missense_Mutation p.R416Q 0.44 tolerated_low_confidence(0.53) benign(0.001) TCGA-95-7043-01 2 87085357 87085357 C A CD8B Missense_Mutation p.A76S 0.52 tolerated(1) benign(0) TCGA-95-7043-01 2 89544454 89544454 T G IGKV2-30 Missense_Mutation p.Y57S 0.45 deleterious(0.02) benign(0.285) TCGA-95-7043-01 2 90458658 90458658 G T CH17-132F21.1 Missense_Mutation p.D112Y 0.10 TCGA-95-7043-01 3 100988399 100988400 - A IMPG2 Frame_Shift_Ins p.G283Wfs*12 0.17 TCGA-95-7043-01 3 10392146 10392146 C A ATP2B2 Missense_Mutation p.G751V 0.79 deleterious(0) probably_damaging(0.979) TCGA-95-7043-01 3 108096133 108096133 G A HHLA2 3'UTR 1.00 TCGA-95-7043-01 3 108549564 108549564 G T TRAT1 Missense_Mutation p.G19C 0.86 deleterious(0.02) probably_damaging(0.998) TCGA-95-7043-01 3 11059079 11059079 C - SLC6A1 Frame_Shift_Del p.I62Sfs*22 0.47 TCGA-95-7043-01 3 111705160 111705160 A T ABHD10 Missense_Mutation p.T126S 0.91 tolerated(0.12) benign(0.219) TCGA-95-7043-01 3 119451224 119451224 G T MAATS1 Missense_Mutation p.A368S 0.91 tolerated(0.34) benign(0.119) TCGA-95-7043-01 3 123457762 123457762 C T MYLK Silent p.P190P 0.28 TCGA-95-7043-01 3 124578287 124578287 C A ITGB5 Nonsense_Mutation p.G55* 0.65 TCGA-95-7043-01 3 126751248 126751248 G T PLXNA1 Missense_Mutation p.W1750C 0.91 deleterious(0) probably_damaging(1) TCGA-95-7043-01 3 127294893 127294893 C A TPRA1 Missense_Mutation p.G167W 0.52 deleterious(0) probably_damaging(0.99) TCGA-95-7043-01 3 127786902 127786902 G T SEC61A1 Missense_Mutation p.R415L 0.27 deleterious(0) probably_damaging(0.951) TCGA-95-7043-01 3 129291713 129291713 C T PLXND1 Missense_Mutation p.G970D 0.09 deleterious(0) probably_damaging(0.974) TCGA-95-7043-01 3 130698177 130698177 T C ATP2C1 Missense_Mutation p.V586A 0.87 deleterious(0.03) benign(0.021) TCGA-95-7043-01 3 139894870 139894870 C A CLSTN2 Missense_Mutation p.P63T 0.87 deleterious(0) probably_damaging(0.992) TCGA-95-7043-01 3 147128676 147128676 G T ZIC1 Missense_Mutation p.E259D 0.93 tolerated(0.11) benign(0.323) TCGA-95-7043-01 3 14861949 14861949 C A FGD5 Silent p.G457G 0.83 TCGA-95-7043-01 3 14862037 14862037 G T FGD5 Missense_Mutation p.G487W 0.82 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 3 151148145 151148145 G T MED12L Missense_Mutation p.R2121L 0.88 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-95-7043-01 3 154146871 154146871 C A GPR149 Silent p.T178T 0.38 TCGA-95-7043-01 3 16242201 16242201 T A GALNT15 Missense_Mutation p.L261Q 0.65 tolerated(0.07) probably_damaging(1) TCGA-95-7043-01 3 164906124 164906124 G A SLITRK3 Missense_Mutation p.T832M 0.18 tolerated(0.11) possibly_damaging(0.451) TCGA-95-7043-01 3 167507133 167507133 C T SERPINI1 Missense_Mutation p.R73C 0.32 deleterious(0) probably_damaging(0.986) TCGA-95-7043-01 3 172428871 172428871 T A NCEH1 5'UTR 0.96 TCGA-95-7043-01 3 185241925 185241925 C T LIPH Missense_Mutation p.G218R 0.10 deleterious(0) probably_damaging(1) TCGA-95-7043-01 3 185983091 185983091 C T DGKG Missense_Mutation p.R405K 0.26 tolerated(0.17) benign(0.007) TCGA-95-7043-01 3 194080366 194080366 G A LRRC15 Silent p.V475V 0.93 TCGA-95-7043-01 3 197351046 197351046 C A AC024560.3 RNA 0.66 TCGA-95-7043-01 3 27216141 27216141 C A NEK10 Missense_Mutation p.D897Y 0.84 deleterious(0) probably_damaging(0.978) TCGA-95-7043-01 3 27759079 27759079 G T EOMES Missense_Mutation p.P515T 0.81 deleterious(0.01) benign(0.184) TCGA-95-7043-01 3 2967431 2967431 G - CNTN4 Frame_Shift_Del p.G444Efs*5 0.44 TCGA-95-7043-01 3 38603945 38603945 G T SCN5A Silent p.L1308L 1.00 TCGA-95-7043-01 3 42754701 42754701 G T CCDC13 Missense_Mutation p.P609Q 0.76 deleterious(0.01) possibly_damaging(0.76) TCGA-95-7043-01 3 46414426 46414426 C T CCR5 Silent p.D11D 0.66 TCGA-95-7043-01 3 46935439 46935439 C T PTH1R Silent p.L40L 0.78 TCGA-95-7043-01 3 48689956 48689956 C A CELSR3 Missense_Mutation p.G1889C 0.56 deleterious(0) probably_damaging(0.997) TCGA-95-7043-01 3 49153219 49153219 T A USP19 Missense_Mutation p.S542C 0.79 deleterious(0.02) possibly_damaging(0.838) TCGA-95-7043-01 3 49167053 49167053 C A LAMB2 Missense_Mutation p.G501V 0.80 tolerated(0.56) benign(0.371) TCGA-95-7043-01 3 49395450 49395450 C T GPX1 Intron 0.50 TCGA-95-7043-01 3 49698459 49698459 C T BSN Missense_Mutation p.P3061S 0.82 unknown(0) TCGA-95-7043-01 3 71064794 71064794 C T FOXP1 Missense_Mutation p.E296K 0.77 deleterious(0.02) possibly_damaging(0.554) TCGA-95-7043-01 3 74350699 74350699 C A CNTN3 Splice_Site p.X649_splice 0.74 TCGA-95-7043-01 3 9517764 9517764 G C SETD5 Missense_Mutation p.G1440R 1.00 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 3 97806084 97806084 C A OR5AC2 Missense_Mutation p.P23Q 0.87 tolerated(0.06) benign(0.213) TCGA-95-7043-01 3 98072932 98072932 C A OR5K4 Missense_Mutation p.P79T 0.90 deleterious(0) probably_damaging(0.992) TCGA-95-7043-01 3 98073254 98073254 G T OR5K4 Missense_Mutation p.R186I 0.90 deleterious(0) possibly_damaging(0.905) TCGA-95-7043-01 3 98189183 98189183 C T OR5K1 Missense_Mutation p.L255F 0.93 deleterious(0) possibly_damaging(0.65) TCGA-95-7043-01 4 100002601 100002601 C A ADH5 Missense_Mutation p.D87Y 0.91 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 4 111553593 111553593 G T PITX2 Silent p.S30S 0.86 TCGA-95-7043-01 4 114290745 114290745 T A ANK2 Silent p.P3798P 0.67 TCGA-95-7043-01 4 138442648 138442648 C G PCDH18 Missense_Mutation p.K981N 0.74 deleterious(0) possibly_damaging(0.71) TCGA-95-7043-01 4 143033733 143033733 A G INPP4B Silent p.F746F 0.88 TCGA-95-7043-01 4 144469250 144469250 C T SMARCA5 Missense_Mutation p.P981L 0.81 deleterious(0) possibly_damaging(0.763) TCGA-95-7043-01 4 151000359 151000359 G T DCLK2 Silent p.R60R 0.73 TCGA-95-7043-01 4 151770033 151770033 T A LRBA Missense_Mutation p.T1426S 0.85 tolerated(1) probably_damaging(0.986) TCGA-95-7043-01 4 156135158 156135158 G T NPY2R Missense_Mutation p.G23W 0.93 tolerated_low_confidence(0.08) benign(0.001) TCGA-95-7043-01 4 15841733 15841733 A G CD38 Silent p.E248E 0.85 TCGA-95-7043-01 4 164246718 164246718 G C NPY1R Missense_Mutation p.H298D 0.79 deleterious(0.03) probably_damaging(0.967) TCGA-95-7043-01 4 164393480 164393480 C A TKTL2 Missense_Mutation p.K469N 0.89 tolerated(0.07) possibly_damaging(0.886) TCGA-95-7043-01 4 16504563 16504563 G T LDB2 Intron 0.71 TCGA-95-7043-01 4 169312708 169312708 C A DDX60L Missense_Mutation p.A1300S 1.00 deleterious(0) possibly_damaging(0.893) TCGA-95-7043-01 4 169589501 169589501 G T PALLD Missense_Mutation p.A357S 0.72 deleterious(0) probably_damaging(0.998) TCGA-95-7043-01 4 177083325 177083325 G T WDR17 Missense_Mutation p.E974D 0.79 tolerated(0.34) possibly_damaging(0.55) TCGA-95-7043-01 4 178262723 178262723 T - NEIL3 Frame_Shift_Del p.F266Lfs*7 0.42 TCGA-95-7043-01 4 183522079 183522079 C A TENM3 Missense_Mutation p.Q172K 0.85 tolerated_low_confidence(0.67) benign(0.149) TCGA-95-7043-01 4 185681540 185681540 G A ACSL1 Nonsense_Mutation p.Q585* 0.82 TCGA-95-7043-01 4 187518259 187518259 C A FAT1 Silent p.T4145T 0.81 TCGA-95-7043-01 4 190876296 190876296 T A FRG1 Missense_Mutation p.V141D 0.10 deleterious(0.03) probably_damaging(0.995) TCGA-95-7043-01 4 190882991 190882991 G T FRG1 Missense_Mutation p.S215I 0.77 deleterious(0.01) probably_damaging(0.993) TCGA-95-7043-01 4 3432304 3432304 G C RGS12 Missense_Mutation p.A1246P 0.71 tolerated(0.33) possibly_damaging(0.604) TCGA-95-7043-01 4 3521898 3521898 C T LRPAP1 Silent p.L124L 0.12 TCGA-95-7043-01 4 38698816 38698816 G A KLF3 Missense_Mutation p.D324N 0.78 deleterious(0.01) possibly_damaging(0.856) TCGA-95-7043-01 4 46066481 46066481 G T GABRG1 Missense_Mutation p.S201Y 0.65 deleterious(0) probably_damaging(0.998) TCGA-95-7043-01 4 55133888 55133888 G A PDGFRA Silent p.V367V 0.69 TCGA-95-7043-01 4 68539437 68539437 C T UBA6 Missense_Mutation p.R175H 0.86 tolerated(1) benign(0.03) TCGA-95-7043-01 4 70799955 70799955 G C CSN1S1 Missense_Mutation p.R26P 0.79 tolerated(0.23) benign(0.015) TCGA-95-7043-01 4 70921224 70921224 C A HTN1 Missense_Mutation p.H38N 0.78 deleterious_low_confidence(0.02) possibly_damaging(0.607) TCGA-95-7043-01 4 73979623 73979623 C A ANKRD17 Missense_Mutation p.E1429D 0.83 benign(0.258) TCGA-95-7043-01 4 75167563 75167563 A G MTHFD2L 3'UTR 0.75 TCGA-95-7043-01 4 76817470 76817470 G T PPEF2 Missense_Mutation p.S3R 0.85 deleterious(0.04) benign(0.067) TCGA-95-7043-01 4 80329142 80329142 C A GK2 Silent p.T71T 0.82 TCGA-95-7043-01 4 88766836 88766836 T A MEPE Silent p.T272T 0.79 TCGA-95-7043-01 4 89199638 89199638 C A PPM1K Missense_Mutation p.R33L 1.00 tolerated_low_confidence(0.7) benign(0.018) TCGA-95-7043-01 4 9922190 9922190 T C SLC2A9 Missense_Mutation p.Q274R 0.50 tolerated(0.61) benign(0.052) TCGA-95-7043-01 5 108133938 108133938 G T FER Missense_Mutation p.D19Y 0.76 deleterious(0) probably_damaging(1) TCGA-95-7043-01 5 11082812 11082812 G C CTNND2 Silent p.L928L 0.40 TCGA-95-7043-01 5 11159798 11159798 G T CTNND2 Silent p.T683T 0.38 TCGA-95-7043-01 5 118969798 118969798 G T FAM170A Missense_Mutation p.V119L 0.78 tolerated(0.54) benign(0.006) TCGA-95-7043-01 5 121187974 121187974 G T FTMT Missense_Mutation p.V106L 0.68 deleterious(0.02) possibly_damaging(0.671) TCGA-95-7043-01 5 122881511 122881511 G T CSNK1G3 Missense_Mutation p.G52C 0.78 deleterious(0) probably_damaging(0.996) TCGA-95-7043-01 5 1232936 1232936 G T SLC6A18 Missense_Mutation p.W124C 0.45 deleterious(0) probably_damaging(0.994) TCGA-95-7043-01 5 127640704 127640704 G A FBN2 Silent p.Y1915Y 0.81 TCGA-95-7043-01 5 131973867 131973867 G T RAD50 Missense_Mutation p.K1190N 0.71 deleterious(0) probably_damaging(0.998) TCGA-95-7043-01 5 132552942 132552942 G C FSTL4 Missense_Mutation p.I529M 0.76 deleterious(0.02) benign(0.344) TCGA-95-7043-01 5 137465150 137465150 T A NME5 Missense_Mutation p.K46I 1.00 deleterious(0.03) benign(0.285) TCGA-95-7043-01 5 139218303 139218303 C G PSD2 Silent p.S638S 0.76 TCGA-95-7043-01 5 140175318 140175319 - T PCDHA2 Frame_Shift_Ins p.N257Ifs*7 0.41 TCGA-95-7043-01 5 140207853 140207853 G C PCDHA6 Silent p.L59L 0.78 TCGA-95-7043-01 5 140209082 140209082 C A PCDHA6 Missense_Mutation p.P469Q 0.69 deleterious_low_confidence(0.03) probably_damaging(0.952) TCGA-95-7043-01 5 140480990 140480990 G T PCDHB3 Nonsense_Mutation p.E253* 0.77 TCGA-95-7043-01 5 140554148 140554148 C A PCDHB7 Silent p.R578R 0.75 TCGA-95-7043-01 5 140580953 140580953 C A PCDHB11 Missense_Mutation p.R536S 0.71 tolerated_low_confidence(0.09) benign(0.111) TCGA-95-7043-01 5 140581353 140581353 C A PCDHB11 Missense_Mutation p.P669H 0.71 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-95-7043-01 5 140590838 140590838 C T PCDHB12 Missense_Mutation p.P787S 0.71 tolerated_low_confidence(0.49) benign(0.002) TCGA-95-7043-01 5 140594246 140594246 G T PCDHB13 Missense_Mutation p.R184L 0.78 tolerated_low_confidence(0.05) benign(0.033) TCGA-95-7043-01 5 140615975 140615975 G T PCDHB18 RNA 0.78 TCGA-95-7043-01 5 140736547 140736547 G T PCDHGA4 Missense_Mutation p.V594L 0.68 deleterious_low_confidence(0) possibly_damaging(0.521) TCGA-95-7043-01 5 140751907 140751907 G T PCDHGB3 Missense_Mutation p.G649V 0.64 deleterious(0) probably_damaging(0.948) TCGA-95-7043-01 5 148754126 148754126 G T IL17B Missense_Mutation p.P117T 0.83 deleterious(0) probably_damaging(0.99) TCGA-95-7043-01 5 149460556 149460556 G T CSF1R Silent p.V27V 0.67 TCGA-95-7043-01 5 149747463 149747463 A C TCOF1 Missense_Mutation p.M121L 0.77 tolerated(0.42) benign(0.001) TCGA-95-7043-01 5 150920179 150920179 A T FAT2 Silent p.T2996T 0.89 TCGA-95-7043-01 5 156482482 156482482 G T HAVCR1 Missense_Mutation p.H37N 0.90 tolerated(0.14) benign(0.081) TCGA-95-7043-01 5 156589873 156589873 C G FAM71B Missense_Mutation p.R468P 0.80 deleterious(0.01) probably_damaging(0.929) TCGA-95-7043-01 5 156899633 156899633 G T NIPAL4 Missense_Mutation p.V356L 0.67 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 5 161119118 161119118 A T GABRA6 Missense_Mutation p.Q333L 0.73 tolerated(0.26) benign(0.16) TCGA-95-7043-01 5 167653201 167653201 C A TENM2 Missense_Mutation p.N1739K 0.83 tolerated(0.07) benign(0.065) TCGA-95-7043-01 5 169267785 169267785 G A DOCK2 Missense_Mutation p.E910K 0.64 tolerated(0.47) benign(0.065) TCGA-95-7043-01 5 172745123 172745123 G T STC2 Silent p.T212T 0.59 TCGA-95-7043-01 5 172745124 172745124 G T STC2 Missense_Mutation p.T212N 0.58 deleterious(0.03) possibly_damaging(0.872) TCGA-95-7043-01 5 174869713 174869713 C - DRD1 Frame_Shift_Del p.Y131Mfs*5 0.36 TCGA-95-7043-01 5 175992346 175992346 C A CDHR2 5'UTR 0.77 TCGA-95-7043-01 5 176812848 176812848 C G SLC34A1 Missense_Mutation p.Q36E 0.71 tolerated_low_confidence(0.12) benign(0.004) TCGA-95-7043-01 5 21765109 21765109 C A CDH12 Missense_Mutation p.C498F 0.40 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 5 23526698 23526698 G T PRDM9 Missense_Mutation p.G501C 0.57 deleterious(0.02) probably_damaging(0.97) TCGA-95-7043-01 5 23526699 23526699 G T PRDM9 Missense_Mutation p.G501V 0.52 deleterious(0.03) possibly_damaging(0.829) TCGA-95-7043-01 5 24535880 24535880 C A CDH10 Missense_Mutation p.G193V 0.46 deleterious(0) probably_damaging(0.998) TCGA-95-7043-01 5 26881517 26881517 T A CDH9 Missense_Mutation p.I700L 0.33 tolerated(0.65) benign(0.109) TCGA-95-7043-01 5 26885730 26885730 T A CDH9 Silent p.I625I 0.42 TCGA-95-7043-01 5 2752838 2752838 G T C5orf38 Missense_Mutation p.R101S 0.27 deleterious_low_confidence(0) benign(0.402) TCGA-95-7043-01 5 31323360 31323360 G A CDH6 Missense_Mutation p.R773Q 0.30 tolerated(0.06) probably_damaging(0.992) TCGA-95-7043-01 5 31526703 31526703 C A DROSHA Missense_Mutation p.V113F 0.31 tolerated_low_confidence(0.21) benign(0.193) TCGA-95-7043-01 5 32780908 32780908 G C NPR3 Missense_Mutation p.A426P 0.36 deleterious(0.03) possibly_damaging(0.492) TCGA-95-7043-01 5 32784940 32784940 G T NPR3 Missense_Mutation p.V489L 0.37 tolerated(0.52) possibly_damaging(0.605) TCGA-95-7043-01 5 34043119 34043119 C - C1QTNF3 Frame_Shift_Del p.A38Qfs*3 0.29 TCGA-95-7043-01 5 35875726 35875726 C A IL7R Intron 0.50 TCGA-95-7043-01 5 3599475 3599475 G T IRX1 Missense_Mutation p.S138I 0.38 deleterious(0) probably_damaging(0.944) TCGA-95-7043-01 5 36257164 36257164 G T RANBP3L Missense_Mutation p.S286Y 0.39 tolerated(1) benign(0.27) TCGA-95-7043-01 5 40979941 40979941 G T C7 Missense_Mutation p.R760S 0.41 tolerated(0.71) benign(0.001) TCGA-95-7043-01 5 43381982 43381982 C A CCL28 Missense_Mutation p.G122C 0.34 tolerated(0.1) possibly_damaging(0.894) TCGA-95-7043-01 5 43388480 43388480 C G CCL28 Missense_Mutation p.D55H 0.44 deleterious(0.01) probably_damaging(1) TCGA-95-7043-01 5 45262443 45262443 C T HCN1 Silent p.P751P 0.51 TCGA-95-7043-01 5 55252045 55252045 C T IL6ST Missense_Mutation p.A359T 0.78 tolerated(0.08) benign(0.031) TCGA-95-7043-01 5 6625754 6625754 T C NSUN2 Missense_Mutation p.N130D 0.43 tolerated(0.11) benign(0.173) TCGA-95-7043-01 5 6633888 6633888 C G SRD5A1 Missense_Mutation p.P67A 0.32 deleterious(0.02) probably_damaging(0.967) TCGA-95-7043-01 5 76028811 76028811 G A F2R Missense_Mutation p.C254Y 0.76 deleterious(0) probably_damaging(1) TCGA-95-7043-01 5 76251618 76251618 G T CRHBP Missense_Mutation p.M158I 0.70 deleterious(0.01) probably_damaging(0.939) TCGA-95-7043-01 5 7766897 7766897 C A ADCY2 Missense_Mutation p.A731E 0.45 tolerated(1) benign(0.002) TCGA-95-7043-01 5 7766902 7766902 A G ADCY2 Missense_Mutation p.N733D 0.43 tolerated(0.57) benign(0.001) TCGA-95-7043-01 5 82786165 82786165 C G VCAN Missense_Mutation p.P107A 0.70 deleterious(0.03) benign(0.139) TCGA-95-7043-01 5 90107048 90107048 G T GPR98 Missense_Mutation p.G5324V 0.78 probably_damaging(0.993) TCGA-95-7043-01 5 9044566 9044566 G T SEMA5A Silent p.P1008P 0.28 TCGA-95-7043-01 5 94992042 94992042 G A RFESD 3'UTR 0.86 TCGA-95-7043-01 5 9629330 9629330 C T TAS2R1 Missense_Mutation p.G272E 0.35 deleterious(0.01) probably_damaging(0.949) TCGA-95-7043-01 6 110778140 110778140 C G SLC22A16 Missense_Mutation p.G45A 0.85 tolerated(1) benign(0.001) TCGA-95-7043-01 6 112480078 112480078 G T LAMA4 Missense_Mutation p.A558E 0.82 tolerated(0.21) benign(0.297) TCGA-95-7043-01 6 117121858 117121858 C T GPRC6A Nonsense_Mutation p.W479* 0.79 TCGA-95-7043-01 6 122744005 122744005 A T HSF2 Missense_Mutation p.S325C 0.71 deleterious(0.01) probably_damaging(0.969) TCGA-95-7043-01 6 132891991 132891991 G T TAAR6 Silent p.L177L 0.90 TCGA-95-7043-01 6 133833917 133833917 G T EYA4 Missense_Mutation p.S447I 0.78 deleterious(0) possibly_damaging(0.748) TCGA-95-7043-01 6 133844274 133844274 G C EYA4 Missense_Mutation p.G566A 0.86 tolerated(0.7) benign(0.004) TCGA-95-7043-01 6 137814589 137814589 G T OLIG3 Missense_Mutation p.P240H 0.82 deleterious(0) probably_damaging(0.996) TCGA-95-7043-01 6 139498103 139498103 G T HECA Missense_Mutation p.G498V 0.69 tolerated(0.13) probably_damaging(1) TCGA-95-7043-01 6 146351269 146351269 C A GRM1 Missense_Mutation p.P206T 0.85 deleterious(0) probably_damaging(1) TCGA-95-7043-01 6 146351270 146351270 C G GRM1 Missense_Mutation p.P206R 0.87 deleterious(0) probably_damaging(1) TCGA-95-7043-01 6 152265379 152265379 G T ESR1 Missense_Mutation p.G278C 0.88 deleterious(0.03) benign(0.195) TCGA-95-7043-01 6 158349650 158349650 G T SNX9 Missense_Mutation p.V402L 0.69 deleterious(0.01) probably_damaging(0.996) TCGA-95-7043-01 6 159687132 159687132 G A FNDC1 Nonsense_Mutation p.W1767* 0.81 TCGA-95-7043-01 6 16143360 16143360 G T MYLIP Missense_Mutation p.V192L 0.83 tolerated(0.05) benign(0.054) TCGA-95-7043-01 6 165712974 165712974 G T C6orf118 Nonsense_Mutation p.Y298* 0.78 TCGA-95-7043-01 6 167754962 167754962 C T TTLL2 Missense_Mutation p.A525V 0.84 tolerated(0.54) benign(0) TCGA-95-7043-01 6 169648861 169648861 G T THBS2 Missense_Mutation p.T87K 0.78 tolerated(0.06) benign(0.142) TCGA-95-7043-01 6 25773795 25773795 C T SLC17A4 Missense_Mutation p.L294F 0.89 tolerated(0.07) probably_damaging(1) TCGA-95-7043-01 6 26240975 26240975 C A HIST1H4F 3'UTR 0.89 TCGA-95-7043-01 6 26413455 26413455 G T BTN3A1 Missense_Mutation p.Q359H 0.77 tolerated(0.06) probably_damaging(0.935) TCGA-95-7043-01 6 35260751 35260751 A T ZNF76 Missense_Mutation p.Q420L 0.81 deleterious(0.01) benign(0.063) TCGA-95-7043-01 6 39271868 39271868 G T KCNK17 Missense_Mutation p.L185I 0.84 deleterious(0.03) possibly_damaging(0.835) TCGA-95-7043-01 6 41058044 41058044 G T NFYA Missense_Mutation p.Q181H 0.86 deleterious(0) probably_damaging(0.983) TCGA-95-7043-01 6 4125573 4125573 T A ECI2 Nonsense_Mutation p.K236* 0.85 TCGA-95-7043-01 6 42883861 42883861 C G PTCRA Silent p.P18P 0.71 TCGA-95-7043-01 6 42934080 42934080 C A PEX6 Missense_Mutation p.G734C 0.83 deleterious(0) probably_damaging(1) TCGA-95-7043-01 6 43306801 43306801 G - ZNF318 Frame_Shift_Del p.I1646Lfs*8 0.42 TCGA-95-7043-01 6 46979916 46979917 - A GPR110 Frame_Shift_Ins p.V315Cfs*6 0.24 TCGA-95-7043-01 6 51503728 51503728 C A PKHD1 Missense_Mutation p.G3809C 0.31 tolerated(0.07) probably_damaging(1) TCGA-95-7043-01 6 51890206 51890206 G A PKHD1 Silent p.L1468L 0.30 TCGA-95-7043-01 6 53373448 53373449 - A GCLC Frame_Shift_Ins p.W297Lfs*10 0.16 TCGA-95-7043-01 6 5369009 5369009 A T FARS2 Missense_Mutation p.K69M 0.81 deleterious(0.01) possibly_damaging(0.805) TCGA-95-7043-01 6 53989472 53989472 G T MLIP Missense_Mutation p.A141S 0.55 deleterious(0.02) benign(0.015) TCGA-95-7043-01 6 57012917 57012917 G T ZNF451 Silent p.V678V 0.29 TCGA-95-7043-01 6 64394326 64394326 G T PHF3 Missense_Mutation p.D235Y 0.22 deleterious_low_confidence(0) benign(0.372) TCGA-95-7043-01 6 64422676 64422676 C - PHF3 Frame_Shift_Del p.S1731Ffs*14 0.37 TCGA-95-7043-01 6 6649876 6649876 G T LY86 Missense_Mutation p.G124V 0.65 deleterious(0) probably_damaging(0.995) TCGA-95-7043-01 6 69943233 69943233 C A BAI3 Silent p.T844T 0.51 TCGA-95-7043-01 6 70064220 70064220 G T BAI3 Missense_Mutation p.M1185I 0.86 deleterious(0) benign(0.038) TCGA-95-7043-01 6 72889554 72889554 C T RIMS1 Nonsense_Mutation p.Q250* 0.78 TCGA-95-7043-01 6 74079001 74079001 G C OOEP Missense_Mutation p.P100A 0.71 deleterious(0.02) probably_damaging(0.996) TCGA-95-7043-01 6 74229077 74229077 T G EEF1A1 Missense_Mutation p.I103L 0.06 deleterious_low_confidence(0.01) benign(0.351) TCGA-95-7043-01 6 7572226 7572226 G T DSP Missense_Mutation p.R685S 0.85 benign(0.11) TCGA-95-7043-01 6 75811368 75811368 C A COL12A1 Missense_Mutation p.G2824V 0.91 probably_damaging(1) TCGA-95-7043-01 6 75847209 75847209 C A COL12A1 Missense_Mutation p.V1780L 0.71 possibly_damaging(0.487) TCGA-95-7043-01 6 76023481 76023481 G T FILIP1 Silent p.A689A 0.80 TCGA-95-7043-01 7 100028156 100028156 G C MEPCE Missense_Mutation p.R172P 0.15 deleterious(0) possibly_damaging(0.691) TCGA-95-7043-01 7 100355873 100355873 T C ZAN Missense_Mutation p.W1120R 0.27 unknown(0) TCGA-95-7043-01 7 100355875 100355875 G T ZAN Missense_Mutation p.W1120C 0.28 unknown(0) TCGA-95-7043-01 7 100355877 100355877 C G ZAN Missense_Mutation p.P1121R 0.58 unknown(0) TCGA-95-7043-01 7 100421849 100421849 C A EPHB4 Silent p.V33V 0.59 TCGA-95-7043-01 7 100459382 100459382 G T SLC12A9 Silent p.L520L 0.26 TCGA-95-7043-01 7 100459383 100459383 G T SLC12A9 Missense_Mutation p.D521Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 7 100552602 100552602 C A MUC3A Missense_Mutation p.S451R 0.12 tolerated(0.21) benign(0.266) TCGA-95-7043-01 7 100678238 100678238 T A MUC17 Missense_Mutation p.S1181T 0.38 unknown(0) TCGA-95-7043-01 7 100678938 100678938 G C MUC17 Missense_Mutation p.S1414T 0.24 unknown(0) TCGA-95-7043-01 7 100687100 100687100 T A MUC17 Missense_Mutation p.C4135S 0.54 benign(0.035) TCGA-95-7043-01 7 102760610 102760610 C A NAPEPLD Nonsense_Mutation p.G119* 0.30 TCGA-95-7043-01 7 103155724 103155724 C T RELN Missense_Mutation p.S2676N 0.27 tolerated(0.14) benign(0.06) TCGA-95-7043-01 7 103193922 103193922 T C RELN Missense_Mutation p.I2020V 0.20 tolerated(0.57) benign(0.01) TCGA-95-7043-01 7 103202352 103202352 C A RELN Silent p.G1753G 0.32 TCGA-95-7043-01 7 103275894 103275894 A C RELN Missense_Mutation p.Y815D 0.64 tolerated(0.18) possibly_damaging(0.545) TCGA-95-7043-01 7 103474000 103474000 C A RELN Missense_Mutation p.G153C 0.24 deleterious(0) possibly_damaging(0.529) TCGA-95-7043-01 7 103969335 103969335 C T LHFPL3 Silent p.I36I 0.27 TCGA-95-7043-01 7 103969337 103969337 G T LHFPL3 Missense_Mutation p.G37V 0.22 deleterious(0) probably_damaging(1) TCGA-95-7043-01 7 105603698 105603698 T C CDHR3 5'UTR 0.26 TCGA-95-7043-01 7 107704242 107704242 C A LAMB4 Missense_Mutation p.G1009C 0.26 deleterious(0) probably_damaging(0.998) TCGA-95-7043-01 7 107745057 107745057 C - LAMB4 Frame_Shift_Del p.G293Vfs*53 0.20 TCGA-95-7043-01 7 107872866 107872866 C A NRCAM Nonsense_Mutation p.E111* 0.30 TCGA-95-7043-01 7 111509684 111509684 G T DOCK4 Nonsense_Mutation p.Y685* 0.23 TCGA-95-7043-01 7 111926927 111926927 G C ZNF277 Splice_Site p.X31_splice 0.28 TCGA-95-7043-01 7 112407276 112407276 T A TMEM168 Missense_Mutation p.Q690H 0.20 tolerated(0.52) benign(0.007) TCGA-95-7043-01 7 112462099 112462099 C A C7orf60 Missense_Mutation p.K306N 0.66 deleterious(0.01) probably_damaging(0.986) TCGA-95-7043-01 7 113520171 113520171 G T PPP1R3A Missense_Mutation p.H326N 0.28 tolerated(0.09) benign(0.044) TCGA-95-7043-01 7 113559067 113559067 C G PPP1R3A 5'UTR 0.21 TCGA-95-7043-01 7 115890435 115890435 G T TES Missense_Mutation p.C196F 0.31 tolerated(0.11) benign(0.003) TCGA-95-7043-01 7 119915317 119915317 T A KCND2 Missense_Mutation p.S211T 0.25 tolerated(0.71) benign(0) TCGA-95-7043-01 7 123334896 123334896 C T WASL Silent p.K233K 0.58 TCGA-95-7043-01 7 123388756 123388756 C A WASL Silent p.P11P 0.45 TCGA-95-7043-01 7 123516864 123516864 C A HYAL4 Silent p.A367A 0.22 TCGA-95-7043-01 7 126173616 126173616 C A GRM8 Missense_Mutation p.R607L 0.30 deleterious(0.03) probably_damaging(0.951) TCGA-95-7043-01 7 127338952 127338952 G T SND1 Nonsense_Mutation p.E125* 0.47 TCGA-95-7043-01 7 128494600 128494600 G T FLNC Silent p.T2287T 0.36 TCGA-95-7043-01 7 128494601 128494601 G T FLNC Missense_Mutation p.V2288F 0.36 deleterious(0) probably_damaging(1) TCGA-95-7043-01 7 129093097 129093097 G T STRIP2 Missense_Mutation p.D147Y 0.49 deleterious(0) benign(0.06) TCGA-95-7043-01 7 129765756 129765756 C T KLHDC10 Missense_Mutation p.P306S 0.50 deleterious(0.03) probably_damaging(0.97) TCGA-95-7043-01 7 130353886 130353886 A T TSGA13 Missense_Mutation p.W266R 0.45 deleterious(0) benign(0.044) TCGA-95-7043-01 7 132709316 132709316 C T CHCHD3 Missense_Mutation p.D81N 0.40 tolerated(0.52) benign(0) TCGA-95-7043-01 7 132959880 132959880 A G EXOC4 Missense_Mutation p.Q77R 0.51 tolerated(0.06) possibly_damaging(0.818) TCGA-95-7043-01 7 140110823 140110823 G C RAB19 Intron 0.43 TCGA-95-7043-01 7 141478657 141478657 G T TAS2R4 Silent p.R123R 0.41 TCGA-95-7043-01 7 141719006 141719006 G A MGAM Missense_Mutation p.C112Y 0.89 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 7 142562421 142562421 G T EPHB6 Missense_Mutation p.G288V 0.30 deleterious(0.01) possibly_damaging(0.694) TCGA-95-7043-01 7 142574921 142574921 C T TRPV6 Missense_Mutation p.R154H 0.50 tolerated(0.37) benign(0.005) TCGA-95-7043-01 7 143056081 143056081 G A FAM131B Missense_Mutation p.P102L 0.74 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 7 143096462 143096462 A - EPHA1 Frame_Shift_Del p.C294Vfs*46 0.17 TCGA-95-7043-01 7 143175250 143175250 C A TAS2R41 Silent p.A95A 0.45 TCGA-95-7043-01 7 144096938 144096938 G T NOBOX Silent p.R356R 0.62 TCGA-95-7043-01 7 144098525 144098525 G T NOBOX Missense_Mutation p.A153D 0.50 deleterious(0.03) benign(0.223) TCGA-95-7043-01 7 146536876 146536876 G C CNTNAP2 Missense_Mutation p.Q94H 0.45 deleterious(0) probably_damaging(0.942) TCGA-95-7043-01 7 148769333 148769333 C A ZNF786 Missense_Mutation p.W177C 0.92 deleterious(0.05) benign(0.02) TCGA-95-7043-01 7 149559330 149559330 C T ZNF862 Silent p.A1027A 0.33 TCGA-95-7043-01 7 150267057 150267057 C A GIMAP4 Intron 0.46 TCGA-95-7043-01 7 150269499 150269499 C T GIMAP4 Missense_Mutation p.P114L 0.89 deleterious(0.02) possibly_damaging(0.766) TCGA-95-7043-01 7 150643995 150643995 G T KCNH2 Silent p.L1100L 0.85 TCGA-95-7043-01 7 150647243 150647243 C A KCNH2 Intron 0.50 TCGA-95-7043-01 7 150815701 150815701 G T AGAP3 Silent p.P317P 0.43 TCGA-95-7043-01 7 15599808 15599808 G T AGMO Missense_Mutation p.A72D 0.44 deleterious(0.03) benign(0.09) TCGA-95-7043-01 7 15666476 15666476 G T MEOX2 Silent p.T195T 0.24 TCGA-95-7043-01 7 23737895 23737895 C T FAM221A Missense_Mutation p.S241F 0.50 deleterious(0) possibly_damaging(0.601) TCGA-95-7043-01 7 2583439 2583439 C A BRAT1 Missense_Mutation p.Q196H 0.36 tolerated(0.05) possibly_damaging(0.907) TCGA-95-7043-01 7 27238965 27238965 C - HOXA13 Frame_Shift_Del p.Q244Hfs*91 0.34 TCGA-95-7043-01 7 31683159 31683159 C A CCDC129 Silent p.A751A 0.38 TCGA-95-7043-01 7 31917651 31917651 T A PDE1C Splice_Site p.X202_splice 0.31 TCGA-95-7043-01 7 34118554 34118554 C A BMPER Nonsense_Mutation p.Y388* 0.46 TCGA-95-7043-01 7 36655997 36655997 G T AOAH Missense_Mutation p.Q279K 0.38 tolerated(0.2) probably_damaging(0.963) TCGA-95-7043-01 7 37382250 37382250 C A ELMO1 Silent p.P15P 0.31 TCGA-95-7043-01 7 37780648 37780648 A T GPR141 Missense_Mutation p.H218L 0.36 deleterious(0) probably_damaging(0.96) TCGA-95-7043-01 7 38282072 38282072 G T TRGC2 Silent p.V128V 0.37 TCGA-95-7043-01 7 44192931 44192931 G A GCK Silent p.P60P 0.55 TCGA-95-7043-01 7 48522714 48522714 C A ABCA13 Missense_Mutation p.A4379D 0.50 benign(0.048) TCGA-95-7043-01 7 5568883 5568883 T C ACTB Missense_Mutation p.Y91C 0.45 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-95-7043-01 7 55902135 55902135 C G SEPT14 Missense_Mutation p.A235P 0.60 deleterious(0.01) benign(0.262) TCGA-95-7043-01 7 57188163 57188163 G T ZNF479 Missense_Mutation p.T320N 0.41 deleterious(0) possibly_damaging(0.694) TCGA-95-7043-01 7 57193727 57193727 G T ZNF479 Missense_Mutation p.P87Q 0.45 deleterious(0) possibly_damaging(0.617) TCGA-95-7043-01 7 57522810 57522810 C A ZNF716 Silent p.T66T 0.37 TCGA-95-7043-01 7 69364473 69364473 G C AUTS2 Missense_Mutation p.A171P 0.29 tolerated(0.87) benign(0.003) TCGA-95-7043-01 7 70246712 70246712 G T AUTS2 Missense_Mutation p.A706S 0.29 deleterious(0) probably_damaging(0.991) TCGA-95-7043-01 7 72159680 72159680 G C MIR4650-2 5'Flank 0.20 TCGA-95-7043-01 7 72658435 72658435 C T GTF2IRD2P1 RNA 0.30 TCGA-95-7043-01 7 72745759 72745759 G T FKBP6 Missense_Mutation p.A190S 0.14 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 7 72754748 72754748 G T FKBP6 Missense_Mutation p.D233Y 0.34 deleterious(0) benign(0.27) TCGA-95-7043-01 7 81355309 81355309 T A HGF Silent p.R355R 0.31 TCGA-95-7043-01 7 82387928 82387928 C A PCLO Missense_Mutation p.W5131L 0.24 unknown(0) TCGA-95-7043-01 7 82580282 82580282 C A PCLO Missense_Mutation p.D3208Y 0.28 unknown(0) TCGA-95-7043-01 7 86394875 86394875 C T GRM3 Silent p.I138I 0.23 TCGA-95-7043-01 7 87069682 87069682 C T ABCB4 Missense_Mutation p.V465I 0.46 tolerated(0.44) benign(0.361) TCGA-95-7043-01 7 87838653 87838653 C A SRI Splice_Site p.X171_splice 0.52 TCGA-95-7043-01 7 88965012 88965012 G A ZNF804B Missense_Mutation p.G906S 0.37 tolerated(0.57) benign(0.006) TCGA-95-7043-01 7 891585 891585 A T SUN1 Splice_Site p.X253_splice 0.39 TCGA-95-7043-01 7 92821666 92821666 C T HEPACAM2 Missense_Mutation p.R429K 0.29 tolerated(0.19) benign(0.004) TCGA-95-7043-01 7 94059592 94059592 G C COL1A2 Missense_Mutation p.E1330Q 0.56 unknown(0) TCGA-95-7043-01 7 95039225 95039225 G - PON2 Frame_Shift_Del p.S228Yfs*26 0.20 TCGA-95-7043-01 7 95157649 95157649 A G ASB4 Intron 0.32 TCGA-95-7043-01 7 96651669 96651669 G T DLX5 Missense_Mutation p.T123N 0.28 tolerated(0.34) benign(0) TCGA-95-7043-01 7 98564763 98564763 G C TRRAP Missense_Mutation p.D2419H 0.30 benign(0.401) TCGA-95-7043-01 7 98586464 98586464 G C TRRAP Missense_Mutation p.G3160R 0.24 probably_damaging(0.998) TCGA-95-7043-01 8 101586066 101586066 G T SNX31 3'UTR 0.85 TCGA-95-7043-01 8 102656453 102656453 G T GRHL2 Missense_Mutation p.V538L 0.75 deleterious(0.02) possibly_damaging(0.795) TCGA-95-7043-01 8 103293656 103293656 C T UBR5 Missense_Mutation p.D1930N 0.22 tolerated(0.94) probably_damaging(0.98) TCGA-95-7043-01 8 104053095 104053095 G T ATP6V1C1 Missense_Mutation p.G11W 0.66 deleterious(0) probably_damaging(1) TCGA-95-7043-01 8 10555224 10555224 C T C8orf74 Silent p.I119I 0.51 TCGA-95-7043-01 8 10555225 10555225 C A C8orf74 Missense_Mutation p.R120S 0.53 tolerated(0.07) benign(0.258) TCGA-95-7043-01 8 10623065 10623065 C A PINX1 Missense_Mutation p.G278V 0.43 tolerated(0.09) benign(0.115) TCGA-95-7043-01 8 107782411 107782411 G - ABRA Frame_Shift_Del p.P3Rfs*122 0.45 TCGA-95-7043-01 8 110131617 110131617 T A TRHR Missense_Mutation p.L377Q 0.58 deleterious_low_confidence(0.02) benign(0.125) TCGA-95-7043-01 8 113241120 113241120 C A CSMD3 Missense_Mutation p.G3610V 0.86 deleterious(0.04) possibly_damaging(0.756) TCGA-95-7043-01 8 113253976 113253976 G T CSMD3 Missense_Mutation p.L3481M 0.54 tolerated(0.25) possibly_damaging(0.519) TCGA-95-7043-01 8 113347615 113347615 G C CSMD3 Missense_Mutation p.L2370V 0.48 deleterious(0.03) probably_damaging(0.988) TCGA-95-7043-01 8 113418917 113418917 G T CSMD3 Missense_Mutation p.P1882H 0.19 deleterious(0) probably_damaging(0.998) TCGA-95-7043-01 8 113697935 113697935 G T CSMD3 Missense_Mutation p.P728T 0.25 deleterious(0.03) probably_damaging(0.992) TCGA-95-7043-01 8 114185950 114185950 C A CSMD3 Splice_Site p.X237_splice 0.73 TCGA-95-7043-01 8 117950633 117950633 G A AARD Missense_Mutation p.A51T 0.64 tolerated(0.24) probably_damaging(0.913) TCGA-95-7043-01 8 118147573 118147573 T A SLC30A8 Missense_Mutation p.F3I 0.15 tolerated(0.19) benign(0.033) TCGA-95-7043-01 8 120114614 120114614 G T COLEC10 Missense_Mutation p.G107V 0.60 deleterious(0) probably_damaging(1) TCGA-95-7043-01 8 125072822 125072822 G T FER1L6 Missense_Mutation p.V1007L 0.67 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 8 134225300 134225300 C A WISP1 Missense_Mutation p.T88K 0.69 deleterious(0.01) probably_damaging(0.95) TCGA-95-7043-01 8 139629171 139629171 C A COL22A1 Missense_Mutation p.A1286S 0.12 unknown(0) TCGA-95-7043-01 8 142458055 142458055 G T SNORD5 3'Flank 0.64 TCGA-95-7043-01 8 143956654 143956654 G C CYP11B1 Missense_Mutation p.A399G 0.22 deleterious(0.01) probably_damaging(0.938) TCGA-95-7043-01 8 1842738 1842738 G T ARHGEF10 Silent p.S480S 0.92 TCGA-95-7043-01 8 2017574 2017574 G A MYOM2 Missense_Mutation p.G251R 0.37 deleterious(0.02) possibly_damaging(0.611) TCGA-95-7043-01 8 27528514 27528514 G C SCARA3 Missense_Mutation p.L489F 0.54 tolerated(0.48) possibly_damaging(0.849) TCGA-95-7043-01 8 39695667 39695667 C A ADAM2 Missense_Mutation p.G13V 0.06 deleterious(0.02) benign(0.097) TCGA-95-7043-01 8 41387778 41387778 G T GINS4 Silent p.V19V 0.44 TCGA-95-7043-01 8 52232462 52232462 C T PXDNL Missense_Mutation p.E1461K 0.82 tolerated_low_confidence(0.09) benign(0.004) TCGA-95-7043-01 8 52232505 52232505 G T PXDNL Nonsense_Mutation p.C1446* 0.69 TCGA-95-7043-01 8 52287226 52287226 C G PXDNL Missense_Mutation p.G1208A 0.75 deleterious(0) probably_damaging(0.996) TCGA-95-7043-01 8 52412259 52412259 A T PXDNL Missense_Mutation p.L151Q 0.29 deleterious(0) probably_damaging(0.993) TCGA-95-7043-01 8 57354422 57354422 C A PENK Silent p.L71L 0.83 TCGA-95-7043-01 8 57358534 57358534 G T PENK 5'UTR 0.56 TCGA-95-7043-01 8 62289231 62289231 C A CLVS1 Missense_Mutation p.L175I 0.82 tolerated(0.48) benign(0.348) TCGA-95-7043-01 8 69020436 69020436 C T PREX2 Silent p.T936T 0.83 TCGA-95-7043-01 8 71581315 71581315 C A LACTB2 Missense_Mutation p.R14L 0.75 deleterious(0.02) benign(0.006) TCGA-95-7043-01 8 87081748 87081748 C G PSKH2 Missense_Mutation p.G35A 0.70 tolerated(0.27) benign(0.04) TCGA-95-7043-01 8 87570585 87570585 A G CPNE3 Missense_Mutation p.T521A 0.23 tolerated(0.59) benign(0.002) TCGA-95-7043-01 8 88885757 88885757 C - DCAF4L2 Frame_Shift_Del p.G148Dfs*18 0.13 TCGA-95-7043-01 8 93023228 93023228 A G RUNX1T1 Splice_Site p.X197_splice 0.23 TCGA-95-7043-01 8 93029639 93029639 A T RUNX1T1 Intron 0.44 TCGA-95-7043-01 8 93074840 93074840 G C RUNX1T1 Intron 0.25 TCGA-95-7043-01 8 95158220 95158220 G A CDH17 Silent p.P701P 0.58 TCGA-95-7043-01 8 97256192 97256192 G A MTERFD1 Silent p.H338H 0.66 TCGA-95-7043-01 9 103111484 103111484 A T TEX10 Missense_Mutation p.N54K 0.41 tolerated(0.82) benign(0.082) TCGA-95-7043-01 9 104133567 104133567 G A BAAT Silent p.N40N 0.19 TCGA-95-7043-01 9 104317070 104317070 G A RNF20 Missense_Mutation p.R705Q 0.41 tolerated(0.06) benign(0.081) TCGA-95-7043-01 9 107331522 107331522 C G OR13C8 Missense_Mutation p.T25R 0.46 tolerated(0.69) benign(0.295) TCGA-95-7043-01 9 107331774 107331774 C - OR13C8 Frame_Shift_Del p.T110Rfs*4 0.31 TCGA-95-7043-01 9 107574976 107574976 C A ABCA1 Missense_Mutation p.G1310V 0.38 deleterious(0.02) benign(0.091) TCGA-95-7043-01 9 110249774 110249774 C A KLF4 Missense_Mutation p.A301S 0.38 tolerated(0.8) benign(0) TCGA-95-7043-01 9 111617354 111617354 C - ACTL7B Frame_Shift_Del p.G286Afs*74 0.21 TCGA-95-7043-01 9 113205783 113205783 T A SVEP1 Intron 0.71 TCGA-95-7043-01 9 114820804 114820804 T C SUSD1 Missense_Mutation p.I671M 0.45 deleterious(0.03) benign(0.139) TCGA-95-7043-01 9 115805811 115805811 C A ZFP37 Missense_Mutation p.A363S 0.49 tolerated(0.99) probably_damaging(0.992) TCGA-95-7043-01 9 117028854 117028854 G T COL27A1 Nonsense_Mutation p.G1135* 0.38 TCGA-95-7043-01 9 118164403 118164403 G A DEC1 Silent p.%3D 0.30 TCGA-95-7043-01 9 118969867 118969867 C A PAPPA Silent p.A537A 0.32 TCGA-95-7043-01 9 119738981 119738981 C T ASTN2 Missense_Mutation p.G508R 0.44 deleterious_low_confidence(0.01) unknown(0) TCGA-95-7043-01 9 124074583 124074583 C - GSN Intron 0.33 TCGA-95-7043-01 9 125075536 125075536 G T MRRF Silent p.V194V 0.48 TCGA-95-7043-01 9 125154553 125154553 G A PTGS1 Silent p.K510K 0.38 TCGA-95-7043-01 9 126133229 126133229 C G CRB2 Missense_Mutation p.R633G 0.36 deleterious(0) benign(0.25) TCGA-95-7043-01 9 131262530 131262530 C G ODF2 Missense_Mutation p.A829G 0.29 deleterious_low_confidence(0.02) benign(0.025) TCGA-95-7043-01 9 133932507 133932507 C A LAMC3 Missense_Mutation p.Q711K 0.45 tolerated(0.05) possibly_damaging(0.902) TCGA-95-7043-01 9 133942388 133942388 C A LAMC3 Missense_Mutation p.P797T 0.43 deleterious(0) probably_damaging(1) TCGA-95-7043-01 9 136083520 136083520 A T OBP2B Missense_Mutation p.Y93N 0.43 tolerated(0.22) benign(0.009) TCGA-95-7043-01 9 136915621 136915621 C A BRD3 Missense_Mutation p.A197S 0.44 tolerated(0.89) probably_damaging(0.964) TCGA-95-7043-01 9 138656922 138656922 G T KCNT1 Missense_Mutation p.G361C 0.35 deleterious(0) probably_damaging(0.988) TCGA-95-7043-01 9 139100583 139100583 C A QSOX2 Silent p.P696P 0.53 TCGA-95-7043-01 9 139233111 139233111 G T GPSM1 Missense_Mutation p.E306D 0.54 tolerated(0.09) benign(0.007) TCGA-95-7043-01 9 139990738 139990738 C A MAN1B1 Missense_Mutation p.P172H 0.37 tolerated(0.08) possibly_damaging(0.682) TCGA-95-7043-01 9 140062156 140062156 C T GRIN1 Intron 0.56 TCGA-95-7043-01 9 141016023 141016023 C A CACNA1B Missense_Mutation p.R2198S 0.53 deleterious(0) probably_damaging(0.998) TCGA-95-7043-01 9 19126234 19126234 C A PLIN2 Missense_Mutation p.S35I 0.31 deleterious(0.01) benign(0.079) TCGA-95-7043-01 9 19126235 19126235 T A PLIN2 Missense_Mutation p.S35C 0.30 deleterious(0.02) possibly_damaging(0.619) TCGA-95-7043-01 9 21480970 21480970 A G IFNE 3'UTR 0.35 TCGA-95-7043-01 9 26998035 26998035 G T LRRC19 Missense_Mutation p.L96I 0.35 deleterious(0.01) probably_damaging(0.969) TCGA-95-7043-01 9 2717905 2717905 G A KCNV2 Missense_Mutation p.E56K 0.40 tolerated_low_confidence(0.06) benign(0.028) TCGA-95-7043-01 9 34397704 34397704 C A C9orf24 5'UTR 0.39 TCGA-95-7043-01 9 34397705 34397705 C A C9orf24 5'UTR 0.40 TCGA-95-7043-01 9 34402709 34402709 C A FAM219A Missense_Mutation p.R86L 0.35 deleterious(0.05) probably_damaging(0.999) TCGA-95-7043-01 9 6012689 6012690 - T RANBP6 Frame_Shift_Ins p.N973Kfs*19 0.32 TCGA-95-7043-01 9 65508168 65508168 G T SPATA31A7 Missense_Mutation p.P72H 0.35 deleterious(0.05) probably_damaging(0.998) TCGA-95-7043-01 9 6556225 6556225 G C GLDC Missense_Mutation p.I710M 0.37 deleterious(0) probably_damaging(0.917) TCGA-95-7043-01 9 71144537 71144537 A G PGM5 Missense_Mutation p.R557G 0.55 tolerated(0.32) benign(0.007) TCGA-95-7043-01 9 74838109 74838109 G T GDA Missense_Mutation p.G227V 0.90 deleterious(0) probably_damaging(1) TCGA-95-7043-01 9 79325653 79325653 C A PRUNE2 Missense_Mutation p.A513S 0.75 tolerated(0.06) benign(0.266) TCGA-95-7043-01 9 8319965 8319965 C T PTPRD Missense_Mutation p.A1846T 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-95-7043-01 9 84603853 84603853 G T SPATA31D1 Silent p.L40L 0.76 TCGA-95-7043-01 9 84607299 84607299 C A SPATA31D1 Silent p.G638G 0.70 TCGA-95-7043-01 9 8507430 8507430 T C PTPRD Silent p.P516P 0.45 TCGA-95-7043-01 9 8528597 8528597 G T PTPRD Silent p.R179R 0.31 TCGA-95-7043-01 9 88635851 88635851 G T NAA35 Missense_Mutation p.K695N 0.60 tolerated(0.15) benign(0.175) TCGA-95-7043-01 9 95482728 95482728 C A BICD2 Missense_Mutation p.G306C 0.85 deleterious(0) possibly_damaging(0.79) TCGA-95-7043-01 9 96024316 96024316 C G WNK2 Missense_Mutation p.P1096R 0.62 unknown(0) TCGA-95-7043-01 9 96429477 96429477 T G PHF2 Missense_Mutation p.L768R 0.83 deleterious(0) unknown(0) TCGA-95-7043-01 X 100911707 100911707 G T ARMCX2 Silent p.R290R 0.28 TCGA-95-7043-01 X 101768985 101768985 G A TMSB15A 3'UTR 0.26 TCGA-95-7043-01 X 101857907 101857907 G T ARMCX5 Nonsense_Mutation p.E280* 0.49 TCGA-95-7043-01 X 101857943 101857943 G T ARMCX5 Missense_Mutation p.G292W 0.52 tolerated(0.06) probably_damaging(0.988) TCGA-95-7043-01 X 102968568 102968568 C A GLRA4 Missense_Mutation p.W321C 0.27 deleterious(0) probably_damaging(1) TCGA-95-7043-01 X 102968923 102968923 C A TMEM31 Missense_Mutation p.F168L 0.53 deleterious_low_confidence(0) benign(0.077) TCGA-95-7043-01 X 107402958 107402958 G T COL4A6 Missense_Mutation p.P1517T 0.25 benign(0.019) TCGA-95-7043-01 X 107422547 107422547 G A COL4A6 Silent p.D752D 0.26 TCGA-95-7043-01 X 107909782 107909782 C A COL4A5 Missense_Mutation p.Q1171K 0.50 unknown(0) TCGA-95-7043-01 X 107976481 107976482 - A IRS4 Frame_Shift_Ins p.A1032Cfs*2 0.32 TCGA-95-7043-01 X 115303526 115303526 A G AGTR2 5'UTR 0.34 TCGA-95-7043-01 X 117959831 117959831 C T ZCCHC12 Silent p.N208N 0.53 TCGA-95-7043-01 X 118109535 118109535 C G LONRF3 Silent p.L264L 0.73 TCGA-95-7043-01 X 118221720 118221720 G T KIAA1210 Missense_Mutation p.A1158D 0.58 tolerated(0.1) benign(0.154) TCGA-95-7043-01 X 118223080 118223080 G T KIAA1210 Missense_Mutation p.Q705K 0.66 tolerated(0.28) benign(0) TCGA-95-7043-01 X 122551485 122551485 C A GRIA3 Missense_Mutation p.P578H 0.30 deleterious(0) probably_damaging(0.992) TCGA-95-7043-01 X 122616661 122616661 C - GRIA3 Frame_Shift_Del p.S817Rfs*3 0.38 TCGA-95-7043-01 X 122760512 122760512 G T THOC2 Missense_Mutation p.P920H 0.34 deleterious(0.01) probably_damaging(0.95) TCGA-95-7043-01 X 123041011 123041011 C A XIAP Missense_Mutation p.Q492K 0.56 tolerated(0.15) possibly_damaging(0.908) TCGA-95-7043-01 X 123554363 123554363 C A TENM1 Missense_Mutation p.V1594L 0.31 tolerated(0.92) benign(0.05) TCGA-95-7043-01 X 128624153 128624153 A C SMARCA1 Missense_Mutation p.I611S 0.72 deleterious(0) probably_damaging(1) TCGA-95-7043-01 X 128652416 128652416 A G SMARCA1 Silent p.V61V 0.60 TCGA-95-7043-01 X 128657242 128657242 C T SMARCA1 Missense_Mutation p.E36K 0.24 tolerated(0.53) benign(0.003) TCGA-95-7043-01 X 128957772 128957772 G T ZDHHC9 Missense_Mutation p.P124T 0.49 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 X 129055513 129055513 G T UTP14A Missense_Mutation p.R433I 0.49 tolerated(0.06) benign(0.018) TCGA-95-7043-01 X 129281788 129281788 C A AIFM1 Missense_Mutation p.G138V 0.56 deleterious(0) probably_damaging(1) TCGA-95-7043-01 X 129506898 129506898 G T SLC25A14 Nonsense_Mutation p.E318* 0.55 TCGA-95-7043-01 X 131202555 131202555 G A MST4 Nonsense_Mutation p.W185* 0.35 TCGA-95-7043-01 X 131212529 131212529 G T FRMD7 Missense_Mutation p.P506T 0.28 deleterious(0.04) benign(0.021) TCGA-95-7043-01 X 131526362 131526362 C A MBNL3 Missense_Mutation p.G115C 0.43 deleterious(0.02) benign(0.357) TCGA-95-7043-01 X 134993903 134993903 G T SAGE1 Missense_Mutation p.S771I 0.28 deleterious(0) probably_damaging(0.931) TCGA-95-7043-01 X 135292119 135292119 G C FHL1 3'UTR 0.30 TCGA-95-7043-01 X 135322608 135322608 C T MAP7D3 Silent p.Q191Q 0.55 TCGA-95-7043-01 X 135323319 135323319 C A MAP7D3 Missense_Mutation p.A179S 0.46 tolerated(0.07) benign(0.041) TCGA-95-7043-01 X 135431007 135431007 T A GPR112 Silent p.T1714T 0.60 TCGA-95-7043-01 X 135572419 135572419 G A BRS3 Missense_Mutation p.V188I 0.60 tolerated(0.05) possibly_damaging(0.669) TCGA-95-7043-01 X 137715101 137715101 G T FGF13 Silent p.S226S 0.24 TCGA-95-7043-01 X 137939743 137939743 C G FGF13 Missense_Mutation p.A50P 0.32 deleterious_low_confidence(0.01) benign(0.329) TCGA-95-7043-01 X 138679702 138679702 A G MCF2 Silent p.L734L 0.61 TCGA-95-7043-01 X 138708385 138708385 C A MCF2 Silent p.L278L 0.57 TCGA-95-7043-01 X 139038471 139038471 C G CXorf66 Missense_Mutation p.E224Q 0.60 tolerated(1) possibly_damaging(0.859) TCGA-95-7043-01 X 140271183 140271183 C A LDOC1 Silent p.L8L 0.41 TCGA-95-7043-01 X 140985371 140985371 C A MAGEC3 Intron 0.51 TCGA-95-7043-01 X 142605142 142605142 C A SPANXN3 Missense_Mutation p.E26D 0.07 tolerated(0.06) possibly_damaging(0.527) TCGA-95-7043-01 X 142967173 142967173 G A UBE2NL 5'UTR 0.35 TCGA-95-7043-01 X 144904214 144904214 C A SLITRK2 Missense_Mutation p.L91I 0.32 tolerated(0.39) probably_damaging(0.999) TCGA-95-7043-01 X 145078263 145078263 C G MIR891B 3'Flank 0.55 TCGA-95-7043-01 X 14625390 14625390 G A GLRA2 Missense_Mutation p.G239R 0.66 deleterious(0.02) probably_damaging(0.997) TCGA-95-7043-01 X 147011491 147011491 G T FMR1 Missense_Mutation p.K148N 0.62 deleterious(0.02) possibly_damaging(0.453) TCGA-95-7043-01 X 147026523 147026523 G A FMR1 Missense_Mutation p.G536R 0.73 tolerated_low_confidence(0.05) possibly_damaging(0.776) TCGA-95-7043-01 X 147026524 147026524 G T FMR1 Missense_Mutation p.G536V 0.75 deleterious_low_confidence(0) possibly_damaging(0.697) TCGA-95-7043-01 X 147743550 147743550 C A AFF2 Missense_Mutation p.S101Y 0.71 deleterious(0.02) probably_damaging(0.996) TCGA-95-7043-01 X 148037572 148037572 C A AFF2 Missense_Mutation p.P666Q 0.68 tolerated(0.66) possibly_damaging(0.812) TCGA-95-7043-01 X 148038108 148038108 G C AFF2 Missense_Mutation p.E845Q 0.61 deleterious(0.02) possibly_damaging(0.614) TCGA-95-7043-01 X 148690348 148690348 C G TMEM185A Missense_Mutation p.C130S 0.22 deleterious(0.02) probably_damaging(1) TCGA-95-7043-01 X 150345294 150345294 C A GPR50 Missense_Mutation p.A34E 0.66 deleterious(0.01) benign(0.333) TCGA-95-7043-01 X 150349445 150349445 T A GPR50 Missense_Mutation p.S464T 0.71 deleterious_low_confidence(0.05) benign(0.028) TCGA-95-7043-01 X 151092786 151092786 C A MAGEA4 Missense_Mutation p.A217D 0.65 deleterious(0) probably_damaging(0.994) TCGA-95-7043-01 X 152721042 152721042 G T HAUS7 Silent p.P306P 0.59 TCGA-95-7043-01 X 152815537 152815537 T C ATP2B3 Missense_Mutation p.V539A 0.72 deleterious(0.02) probably_damaging(0.968) TCGA-95-7043-01 X 152959710 152959710 C G SLC6A8 Silent p.S460S 0.65 TCGA-95-7043-01 X 153001804 153001804 G T ABCD1 Silent p.T410T 0.23 TCGA-95-7043-01 X 153171971 153171971 C A AVPR2 Intron 0.69 TCGA-95-7043-01 X 153176039 153176039 C A ARHGAP4 Nonsense_Mutation p.E655* 0.32 TCGA-95-7043-01 X 153587460 153587460 G T FLNA Missense_Mutation p.P1456T 0.61 deleterious(0.02) benign(0.067) TCGA-95-7043-01 X 153590134 153590134 T G FLNA Missense_Mutation p.T950P 0.48 deleterious(0.01) benign(0.274) TCGA-95-7043-01 X 153608666 153608666 C A EMD Missense_Mutation p.P113Q 0.69 tolerated(0.06) benign(0.002) TCGA-95-7043-01 X 154158167 154158167 C A F8 Nonsense_Mutation p.G1300* 0.24 TCGA-95-7043-01 X 154255175 154255175 G T FUNDC2 5'UTR 0.75 TCGA-95-7043-01 X 154754199 154754200 - T TMLHE Frame_Shift_Ins p.R93Afs*21 0.40 TCGA-95-7043-01 X 155004198 155004198 G T SPRY3 Missense_Mutation p.W222L 0.19 deleterious(0) probably_damaging(0.994) TCGA-95-7043-01 X 21627341 21627341 C A CNKSR2 Silent p.R766R 0.85 TCGA-95-7043-01 X 2184953 2184953 C A DHRSX Missense_Mutation p.D142Y 0.77 deleterious(0) probably_damaging(1) TCGA-95-7043-01 X 2772127 2772127 C T GYG2 Missense_Mutation p.L117F 0.83 tolerated(0.58) possibly_damaging(0.501) TCGA-95-7043-01 X 3240313 3240313 G T MXRA5 Missense_Mutation p.P1138Q 0.84 tolerated(0.06) benign(0.035) TCGA-95-7043-01 X 32827656 32827656 G T DMD Missense_Mutation p.N201K 0.77 possibly_damaging(0.836) TCGA-95-7043-01 X 32834669 32834669 C A DMD Missense_Mutation p.R149L 0.71 possibly_damaging(0.5) TCGA-95-7043-01 X 34150258 34150258 C A FAM47A Missense_Mutation p.Q46H 0.76 deleterious(0) probably_damaging(0.977) TCGA-95-7043-01 X 38031232 38031232 C A SRPX Missense_Mutation p.C143F 0.95 deleterious(0) probably_damaging(0.999) TCGA-95-7043-01 X 41586807 41586807 C A GPR82 Silent p.V176V 0.83 TCGA-95-7043-01 X 47466569 47466569 G T SYN1 Missense_Mutation p.H136N 0.58 tolerated(0.59) benign(0.018) TCGA-95-7043-01 X 47920238 47920238 C G ZNF630 Missense_Mutation p.R34S 0.71 deleterious(0.01) benign(0.255) TCGA-95-7043-01 X 49955701 49955701 G T AKAP4 Missense_Mutation p.Q823K 0.75 deleterious(0) possibly_damaging(0.664) TCGA-95-7043-01 X 54777568 54777568 G C ITIH6 Missense_Mutation p.R1200G 0.67 tolerated(0.32) benign(0.118) TCGA-95-7043-01 X 54838685 54838685 G T MAGED2 Splice_Site p.X362_splice 0.73 TCGA-95-7043-01 X 54954192 54954192 A G TRO Missense_Mutation p.K619R 0.82 deleterious(0.04) unknown(0) TCGA-95-7043-01 X 55513782 55513782 C A USP51 Nonsense_Mutation p.E531* 0.78 TCGA-95-7043-01 X 63412928 63412928 C A AMER1 Missense_Mutation p.G80V 0.85 deleterious(0.02) benign(0.418) TCGA-95-7043-01 X 65411974 65411974 G A HEPH Missense_Mutation p.G410S 0.73 tolerated(0.06) probably_damaging(1) TCGA-95-7043-01 X 65414993 65414993 C A HEPH Missense_Mutation p.R529S 0.78 deleterious(0) probably_damaging(0.909) TCGA-95-7043-01 X 65480040 65480040 C A HEPH Missense_Mutation p.H1099Q 0.94 deleterious(0) probably_damaging(1) TCGA-95-7043-01 X 69282386 69282386 G T OTUD6A Silent p.P4P 0.53 TCGA-95-7043-01 X 69501021 69501021 G T ARR3 Intron 0.24 TCGA-95-7043-01 X 70341558 70341558 C A MED12 Silent p.T331T 0.56 TCGA-95-7043-01 X 70352234 70352234 G T MED12 Nonsense_Mutation p.E1421* 0.34 TCGA-95-7043-01 X 70352315 70352315 G T MED12 Missense_Mutation p.G1448W 0.50 probably_damaging(0.991) TCGA-95-7043-01 X 70517785 70517785 T A NONO Missense_Mutation p.D376E 0.24 tolerated(0.35) benign(0.008) TCGA-95-7043-01 X 70784509 70784509 G T OGT Missense_Mutation p.R832L 0.63 deleterious(0) probably_damaging(1) TCGA-95-7043-01 X 71360077 71360077 G T NHSL2 Missense_Mutation p.E893D 0.08 deleterious(0.03) benign(0.346) TCGA-95-7043-01 X 72673480 72673480 G T CDX4 Silent p.L210L 0.61 TCGA-95-7043-01 X 73044656 73044656 C - XIST RNA 0.16 TCGA-95-7043-01 X 73811407 73811407 G T RLIM Missense_Mutation p.N581K 0.46 deleterious(0) probably_damaging(0.997) TCGA-95-7043-01 X 73963343 73963343 G T KIAA2022 Missense_Mutation p.S350Y 0.59 deleterious(0) possibly_damaging(0.506) TCGA-95-7043-01 X 75003851 75003851 C A MAGEE2 Nonsense_Mutation p.E346* 0.54 TCGA-95-7043-01 X 75650314 75650314 C A MAGEE1 Missense_Mutation p.T664N 0.53 deleterious(0.04) benign(0.2) TCGA-95-7043-01 X 76938803 76938803 C A ATRX Nonsense_Mutation p.E649* 0.58 TCGA-95-7043-01 X 77109424 77109424 G A MAGT1 Missense_Mutation p.A299V 0.57 tolerated(0.23) benign(0.044) TCGA-95-7043-01 X 77267028 77267028 C A ATP7A Missense_Mutation p.H677N 0.56 tolerated(0.23) benign(0.091) TCGA-95-7043-01 X 77298190 77298190 C A ATP7A Silent p.I1303I 0.61 TCGA-95-7043-01 X 77387130 77387130 C A TAF9B Missense_Mutation p.D245Y 0.55 deleterious(0) possibly_damaging(0.526) TCGA-95-7043-01 X 77528599 77528599 G C CYSLTR1 Silent p.T215T 0.67 TCGA-95-7043-01 X 78427217 78427217 T A GPR174 Missense_Mutation p.V238E 0.33 deleterious(0) probably_damaging(1) TCGA-95-7043-01 X 78622629 78622629 C T ITM2A Silent p.T28T 0.38 TCGA-95-7043-01 X 79286260 79286260 C A TBX22 Missense_Mutation p.P405T 0.60 tolerated(0.05) possibly_damaging(0.642) TCGA-95-7043-01 X 79698120 79698120 C A FAM46D Missense_Mutation p.H28N 0.25 deleterious(0.04) probably_damaging(1) TCGA-95-7043-01 X 79952243 79952243 G A BRWD3 Silent p.S1021S 0.31 TCGA-95-7043-01 X 79960191 79960191 G T BRWD3 Missense_Mutation p.Q903K 0.61 tolerated(0.61) benign(0.003) TCGA-95-7043-01 X 82763269 82763269 A C POU3F4 5'UTR 0.32 TCGA-95-7043-01 X 83128432 83128432 C A CYLC1 Nonsense_Mutation p.S239* 0.28 TCGA-95-7043-01 X 83371266 83371266 G A RPS6KA6 Missense_Mutation p.H327Y 0.12 deleterious(0.01) possibly_damaging(0.854) TCGA-95-7043-01 X 83411147 83411147 T A RPS6KA6 Missense_Mutation p.Y65F 0.26 tolerated(0.73) benign(0.002) TCGA-95-7043-01 X 83723981 83723981 A G HDX Silent p.I250I 0.62 TCGA-95-7043-01 X 84363299 84363299 G A SATL1 Missense_Mutation p.P226S 0.58 tolerated(0.38) possibly_damaging(0.803) TCGA-95-7043-01 X 84510740 84510740 T A ZNF711 Silent p.T185T 0.33 TCGA-95-7043-01 X 86772993 86772993 G T KLHL4 Nonsense_Mutation p.G33* 0.26 TCGA-95-7043-01 X 8768213 8768213 G T FAM9A 5'UTR 1.00 TCGA-95-7043-01 X 88008905 88008905 G T CPXCR1 Missense_Mutation p.A164S 0.36 tolerated(0.41) possibly_damaging(0.866) TCGA-95-7043-01 X 89177276 89177276 C G TGIF2LX Missense_Mutation p.I64M 0.57 deleterious(0) probably_damaging(0.979) TCGA-95-7043-01 X 89177530 89177530 G A TGIF2LX Missense_Mutation p.S149N 0.27 tolerated(0.48) benign(0.006) TCGA-95-7043-01 X 91133695 91133695 C A PCDH11X Missense_Mutation p.A819D 0.38 deleterious(0) probably_damaging(0.965) TCGA-95-7043-01 X 91133962 91133962 C G PCDH11X Missense_Mutation p.P908R 0.30 deleterious(0.01) probably_damaging(0.991) TCGA-95-7043-01 X 91873433 91873433 G T PCDH11X Missense_Mutation p.A1180S 0.28 tolerated_low_confidence(0.48) benign(0.002) TCGA-95-7043-01 X 92964479 92964479 G T FAM133A Missense_Mutation p.G21C 0.47 deleterious_low_confidence(0) probably_damaging(1) TCGA-95-7043-01 X 96212929 96212929 G C DIAPH2 Missense_Mutation p.G573R 0.47 tolerated(0.3) unknown(0) TCGA-95-7562-01 10 104111668 104111668 G T GBF1 Missense_Mutation p.M161I 0.43 tolerated(0.07) benign(0.443) TCGA-95-7562-01 10 24820858 24820858 G A KIAA1217 Missense_Mutation p.G1061E 0.44 deleterious(0) probably_damaging(1) TCGA-95-7562-01 10 26463125 26463125 C T MYO3A Missense_Mutation p.T1311I 0.46 tolerated_low_confidence(0.25) benign(0.01) TCGA-95-7562-01 10 26463126 26463126 C T MYO3A Silent p.T1311T 0.44 TCGA-95-7562-01 10 50531840 50531840 C A C10orf71 Missense_Mutation p.P417H 0.15 deleterious(0.01) probably_damaging(0.946) TCGA-95-7562-01 10 50946090 50946090 T A OGDHL Missense_Mutation p.Q807L 0.46 deleterious(0) probably_damaging(0.982) TCGA-95-7562-01 10 63957907 63957907 C G RTKN2 Missense_Mutation p.W530C 0.12 tolerated(0.16) benign(0.016) TCGA-95-7562-01 10 70962674 70962677 ATGG - SUPV3L1 Frame_Shift_Del p.D552Ifs*8 0.14 TCGA-95-7562-01 10 72360415 72360415 C T PRF1 Missense_Mutation p.E82K 0.41 tolerated(0.73) benign(0.001) TCGA-95-7562-01 11 105774686 105774686 C A GRIA4 Missense_Mutation p.D344E 0.49 tolerated(0.56) benign(0.022) TCGA-95-7562-01 11 117266822 117266822 G T CEP164 Missense_Mutation p.V1048F 0.16 deleterious(0.04) possibly_damaging(0.751) TCGA-95-7562-01 11 124121246 124121246 C A OR8G1 Intron 0.55 TCGA-95-7562-01 11 12525923 12525924 CG T PARVA Frame_Shift_Del p.R242Sfs*33 0.28 TCGA-95-7562-01 11 128850628 128850628 G A ARHGAP32 Missense_Mutation p.P585L 0.20 deleterious(0) probably_damaging(0.999) TCGA-95-7562-01 11 18159385 18159385 C T MRGPRX3 Silent p.T212T 0.59 TCGA-95-7562-01 11 19197524 19197524 A G ZDHHC13 3'UTR 0.12 TCGA-95-7562-01 11 1959716 1959716 G T TNNT3 Missense_Mutation p.W257C 0.17 deleterious(0) probably_damaging(0.994) TCGA-95-7562-01 11 290668 290668 G T ATHL1 Intron 0.12 TCGA-95-7562-01 11 34188815 34188816 AG - ABTB2 Frame_Shift_Del p.S582Cfs*39 0.10 TCGA-95-7562-01 11 43702264 43702264 G T HSD17B12 5'UTR 0.68 TCGA-95-7562-01 11 45274074 45274074 G T SYT13 Silent p.R248R 0.14 TCGA-95-7562-01 11 4945414 4945414 A G OR51G1 Silent p.C52C 0.08 TCGA-95-7562-01 11 4967518 4967518 G T OR51A4 Silent p.P271P 0.12 TCGA-95-7562-01 11 51515930 51515930 G T OR4C46 Missense_Mutation p.V217L 0.53 tolerated_low_confidence(0.15) benign(0.02) TCGA-95-7562-01 11 5274598 5274598 T C HBG2 Missense_Mutation p.H118R 0.13 tolerated(0.08) benign(0.01) TCGA-95-7562-01 11 55322048 55322048 C A OR4C15 Missense_Mutation p.A89E 0.44 deleterious_low_confidence(0) probably_damaging(0.92) TCGA-95-7562-01 11 55587801 55587801 C A OR5D18 Silent p.V232V 0.21 TCGA-95-7562-01 11 55659148 55659148 C A TRIM51 3'UTR 0.21 TCGA-95-7562-01 11 557439 557439 G A C11orf35 Missense_Mutation p.P225S 0.53 deleterious(0) probably_damaging(0.997) TCGA-95-7562-01 11 56143778 56143778 A T OR8U1 Missense_Mutation p.R227W 0.13 deleterious(0) probably_damaging(0.923) TCGA-95-7562-01 11 59834461 59834461 C A MS4A3 Missense_Mutation p.T130K 0.14 deleterious(0.01) possibly_damaging(0.782) TCGA-95-7562-01 11 60296933 60296933 G A MS4A13 Silent p.L134L 0.47 TCGA-95-7562-01 11 60538784 60538784 C A MS4A15 Silent p.L123L 0.18 TCGA-95-7562-01 11 62302648 62302648 C A AHNAK Missense_Mutation p.G57C 0.52 probably_damaging(0.997) TCGA-95-7562-01 11 62434122 62434123 TT - METTL12 Frame_Shift_Del p.P110Cfs*8 0.10 TCGA-95-7562-01 11 64402876 64402876 G T NRXN2 Missense_Mutation p.T1151K 0.40 deleterious(0.05) possibly_damaging(0.862) TCGA-95-7562-01 11 65272241 65272242 TA - MALAT1 RNA 0.32 TCGA-95-7562-01 11 6662397 6662397 G T DCHS1 Missense_Mutation p.L150M 0.30 deleterious(0.03) probably_damaging(0.994) TCGA-95-7562-01 11 6816294 6816294 G A OR6A2 Missense_Mutation p.L216F 0.44 tolerated(0.07) probably_damaging(1) TCGA-95-7562-01 11 77411766 77411766 C A RSF1 Missense_Mutation p.K836N 0.26 deleterious(0) probably_damaging(0.986) TCGA-95-7562-01 11 903090 903090 C A CHID1 Missense_Mutation p.V70L 0.53 deleterious(0) benign(0.376) TCGA-95-7562-01 12 108604024 108604024 C A WSCD2 Silent p.G208G 0.75 TCGA-95-7562-01 12 119563266 119563266 C A SRRM4 Missense_Mutation p.P199H 0.54 deleterious_low_confidence(0) unknown(0) TCGA-95-7562-01 12 13761687 13761687 C G GRIN2B Silent p.V620V 0.59 TCGA-95-7562-01 12 21069043 21069043 G T SLCO1B3 Missense_Mutation p.K657N 0.74 tolerated(0.35) benign(0.008) TCGA-95-7562-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.56 deleterious(0.04) probably_damaging(0.993) TCGA-95-7562-01 12 4488571 4488571 G A FGF23 Missense_Mutation p.H60Y 0.58 tolerated(0.27) possibly_damaging(0.74) TCGA-95-7562-01 12 62104160 62104160 C A FAM19A2 3'UTR 0.55 TCGA-95-7562-01 12 75875685 75875685 G T GLIPR1 Silent p.R82R 0.57 TCGA-95-7562-01 12 80771659 80771659 C A OTOGL Missense_Mutation p.P2289Q 0.70 deleterious(0) probably_damaging(0.995) TCGA-95-7562-01 12 85264449 85264449 C G SLC6A15 Missense_Mutation p.A435P 0.56 deleterious(0.01) possibly_damaging(0.702) TCGA-95-7562-01 13 100617810 100617810 G T ZIC5 Missense_Mutation p.P605T 0.47 tolerated(0.15) benign(0.255) TCGA-95-7562-01 13 115090693 115090695 CTC - CHAMP1 In_Frame_Del p.P460del 0.22 TCGA-95-7562-01 13 36229811 36229811 G T NBEA Nonsense_Mutation p.G2742* 0.51 TCGA-95-7562-01 13 49037878 49037878 T A RB1 Nonsense_Mutation p.C706* 0.51 TCGA-95-7562-01 13 58207160 58207160 C T PCDH17 Silent p.D160D 0.30 TCGA-95-7562-01 13 64321012 64321012 G T AL445989.1 Missense_Mutation p.G27C 0.44 unknown(0) TCGA-95-7562-01 14 104491913 104491913 G T TDRD9 Nonsense_Mutation p.G911* 0.08 TCGA-95-7562-01 14 105414134 105414134 G A AHNAK2 Missense_Mutation p.P2552S 0.12 benign(0.359) TCGA-95-7562-01 14 105416603 105416603 C A AHNAK2 Missense_Mutation p.G1729C 0.20 probably_damaging(0.998) TCGA-95-7562-01 14 106204045 106204045 C G IGHG1 3'UTR 0.29 TCGA-95-7562-01 14 106321768 106321768 C A IGHM Missense_Mutation p.G156W 0.16 deleterious(0.02) possibly_damaging(0.78) TCGA-95-7562-01 14 107034908 107034908 G T IGHV5-51 Missense_Mutation p.Q58K 0.15 deleterious(0) benign(0.269) TCGA-95-7562-01 14 20216497 20216497 T AA OR4Q3 Frame_Shift_Ins p.I304Kfs*? 0.17 TCGA-95-7562-01 14 20404281 20404281 C T OR4K1 Silent p.G152G 0.07 TCGA-95-7562-01 14 20502532 20502532 G A OR4K13 Missense_Mutation p.P129L 0.09 deleterious(0) possibly_damaging(0.452) TCGA-95-7562-01 14 20711185 20711185 C A OR11H4 Missense_Mutation p.L79I 0.17 deleterious(0.01) possibly_damaging(0.762) TCGA-95-7562-01 14 21560931 21560931 C T ZNF219 Silent p.S175S 0.17 TCGA-95-7562-01 14 21840048 21840048 C G SUPT16H Silent p.L105L 0.64 TCGA-95-7562-01 14 23794321 23794321 G T PABPN1 Intron 0.14 TCGA-95-7562-01 14 23886862 23886862 C A MYH7 Missense_Mutation p.E1401D 0.17 deleterious(0.02) probably_damaging(1) TCGA-95-7562-01 14 31852859 31852859 C A HEATR5A Missense_Mutation p.L195F 0.14 deleterious(0.01) probably_damaging(0.991) TCGA-95-7562-01 14 52485851 52485851 G T NID2 Missense_Mutation p.P986T 0.65 tolerated(0.21) benign(0.102) TCGA-95-7562-01 14 57101671 57101671 G T TMEM260 Splice_Site p.X593_splice 0.24 TCGA-95-7562-01 14 63447720 63447720 A G KCNH5 Missense_Mutation p.V271A 0.62 deleterious(0) probably_damaging(0.996) TCGA-95-7562-01 14 63757700 63757700 G A RHOJ Silent p.K201K 0.55 TCGA-95-7562-01 14 74975631 74975631 T C LTBP2 Missense_Mutation p.Q1143R 0.51 tolerated(0.43) benign(0.012) TCGA-95-7562-01 14 77275766 77275766 C A ANGEL1 Missense_Mutation p.M95I 0.53 tolerated(0.14) probably_damaging(0.985) TCGA-95-7562-01 14 81562992 81562992 C A TSHR Nonsense_Mutation p.Y185* 0.23 TCGA-95-7562-01 14 81670444 81670444 C G GTF2A1 Missense_Mutation p.W46S 0.49 deleterious(0) probably_damaging(0.999) TCGA-95-7562-01 14 88983565 88983565 T A PTPN21 Missense_Mutation p.Q74L 0.20 deleterious(0.03) benign(0.023) TCGA-95-7562-01 14 91366489 91366489 T - RPS6KA5 Frame_Shift_Del p.S448Vfs*9 0.22 TCGA-95-7562-01 15 26825543 26825543 C A GABRB3 Missense_Mutation p.G202V 0.35 deleterious(0) probably_damaging(0.989) TCGA-95-7562-01 15 29346346 29346346 G T APBA2 Missense_Mutation p.D87Y 0.54 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-95-7562-01 15 31332462 31332462 C A TRPM1 Silent p.L742L 0.64 TCGA-95-7562-01 15 40702870 40702870 G T IVD Silent p.L113L 0.47 TCGA-95-7562-01 15 40933168 40933168 G T CASC5 Missense_Mutation p.R1940L 0.46 tolerated(0.07) probably_damaging(0.916) TCGA-95-7562-01 15 42092020 42092020 G T MAPKBP1 Splice_Site p.X39_splice 0.57 TCGA-95-7562-01 15 59519758 59519758 C A MYO1E Missense_Mutation p.G181V 0.39 deleterious(0.04) probably_damaging(0.993) TCGA-95-7562-01 15 70975135 70975135 C T UACA Splice_Site p.X262_splice 0.61 TCGA-95-7562-01 15 82574560 82574560 G T FAM154B Missense_Mutation p.Q118H 0.58 deleterious(0) probably_damaging(0.996) TCGA-95-7562-01 15 84683341 84683341 A T ADAMTSL3 Missense_Mutation p.S1341C 0.41 deleterious(0.02) probably_damaging(0.928) TCGA-95-7562-01 15 88472452 88472452 G T NTRK3 Silent p.S701S 0.51 TCGA-95-7562-01 15 91578423 91578423 C T AC068831.10 RNA 0.50 TCGA-95-7562-01 15 97326884 97326884 G T SPATA8 5'UTR 0.42 TCGA-95-7562-01 16 15818444 15818444 G T NDE1 3'UTR 0.27 TCGA-95-7562-01 16 20352529 20352529 C A UMOD Silent p.V487V 0.28 TCGA-95-7562-01 16 20839771 20839771 G T AC004381.6 Missense_Mutation p.C357F 0.34 deleterious(0.01) possibly_damaging(0.739) TCGA-95-7562-01 16 23647469 23647469 C A PALB2 Missense_Mutation p.S133I 0.31 tolerated(0.12) possibly_damaging(0.668) TCGA-95-7562-01 16 23691419 23691419 G T PLK1 Silent p.L141L 0.28 TCGA-95-7562-01 16 24231279 24231279 C A PRKCB 3'UTR 0.25 TCGA-95-7562-01 16 24801401 24801401 A T TNRC6A Missense_Mutation p.T480S 0.25 tolerated(0.91) benign(0.001) TCGA-95-7562-01 16 26147375 26147375 G T HS3ST4 Missense_Mutation p.G393W 0.43 deleterious(0) probably_damaging(1) TCGA-95-7562-01 16 27373726 27373726 C G IL4R Silent p.L351L 0.34 TCGA-95-7562-01 16 28618330 28618330 C A SULT1A1 Missense_Mutation p.K147N 0.36 tolerated(0.12) possibly_damaging(0.825) TCGA-95-7562-01 16 28943304 28943304 C A CD19 5'UTR 0.31 TCGA-95-7562-01 16 28943317 28943317 C T CD19 5'UTR 0.35 TCGA-95-7562-01 16 29859306 29859306 G C MVP Missense_Mutation p.R893P 0.38 deleterious_low_confidence(0) possibly_damaging(0.453) TCGA-95-7562-01 16 30387538 30387538 A G MYLPF Missense_Mutation p.M57V 0.31 deleterious(0.02) benign(0.028) TCGA-95-7562-01 16 49669611 49669611 C A ZNF423 Missense_Mutation p.S1151I 0.51 deleterious(0.02) benign(0.082) TCGA-95-7562-01 16 50709781 50709781 T C SNX20 Missense_Mutation p.Q61R 0.47 deleterious(0) probably_damaging(0.999) TCGA-95-7562-01 16 51175704 51175704 G T SALL1 Missense_Mutation p.S143R 0.54 tolerated(0.37) benign(0.013) TCGA-95-7562-01 16 58076196 58076196 G T MMP15 Missense_Mutation p.G409V 0.43 deleterious(0) possibly_damaging(0.631) TCGA-95-7562-01 16 67858656 67858658 GAG - TSNAXIP1 In_Frame_Del p.E165del 0.19 TCGA-95-7562-01 16 68011906 68011906 C A DPEP3 Nonsense_Mutation p.E256* 0.53 TCGA-95-7562-01 16 7629798 7629798 C T RBFOX1 Missense_Mutation p.P117L 0.19 deleterious(0.01) benign(0.247) TCGA-95-7562-01 16 84778661 84778661 G T USP10 Nonsense_Mutation p.E192* 0.35 TCGA-95-7562-01 17 26951321 26951321 C A KIAA0100 Missense_Mutation p.C1561F 0.61 tolerated(0.14) benign(0.157) TCGA-95-7562-01 17 33343586 33343586 T A RFFL Missense_Mutation p.E230V 0.66 deleterious(0.04) probably_damaging(0.939) TCGA-95-7562-01 17 34149647 34149647 A T TAF15 Missense_Mutation p.Q98H 0.65 tolerated_low_confidence(0.16) benign(0) TCGA-95-7562-01 17 34325331 34325331 G T CCL15 Missense_Mutation p.S78Y 0.53 deleterious(0.01) probably_damaging(0.951) TCGA-95-7562-01 17 35453958 35453958 C A ACACA Missense_Mutation p.W2288C 0.56 deleterious(0) possibly_damaging(0.899) TCGA-95-7562-01 17 39978640 39978640 C A FKBP10 Silent p.R577R 0.59 TCGA-95-7562-01 17 40958713 40958713 C A CNTD1 Missense_Mutation p.P201Q 0.64 deleterious(0) benign(0.101) TCGA-95-7562-01 17 5039129 5039129 C A USP6 Missense_Mutation p.S190R 0.59 deleterious_low_confidence(0) possibly_damaging(0.637) TCGA-95-7562-01 17 56643155 56643155 G A TEX14 Missense_Mutation p.T1352M 0.16 tolerated(0.18) benign(0.019) TCGA-95-7562-01 17 74473010 74473010 G T RHBDF2 Missense_Mutation p.H368Q 0.58 tolerated(0.87) benign(0.01) TCGA-95-7562-01 17 74878337 74878337 G T MGAT5B Nonsense_Mutation p.E107* 0.63 TCGA-95-7562-01 17 7579591 7579591 C A TP53 Splice_Site p.X33_splice 0.58 TCGA-95-7562-01 17 80049286 80049286 T C FASN Missense_Mutation p.Q435R 0.43 tolerated(0.23) benign(0.001) TCGA-95-7562-01 17 9763285 9763285 G T GLP2R Missense_Mutation p.Q264H 0.57 tolerated(0.43) benign(0.044) TCGA-95-7562-01 17 9828916 9828916 C A GAS7 Missense_Mutation p.A339S 0.61 tolerated(0.2) possibly_damaging(0.794) TCGA-95-7562-01 18 31324562 31324562 C A ASXL3 Missense_Mutation p.R1584S 0.71 benign(0.005) TCGA-95-7562-01 18 39623776 39623776 G C PIK3C3 Missense_Mutation p.S728T 0.65 deleterious(0.02) benign(0.311) TCGA-95-7562-01 18 51731402 51731403 TG - MBD2 Frame_Shift_Del p.Q223Efs*11 0.11 TCGA-95-7562-01 18 59221514 59221514 C T CDH20 Silent p.R664R 0.72 TCGA-95-7562-01 18 64235801 64235801 G C CDH19 Missense_Mutation p.I114M 0.70 deleterious(0.01) benign(0.01) TCGA-95-7562-01 18 76754439 76754439 C A SALL3 Silent p.T816T 0.63 TCGA-95-7562-01 19 10397793 10397793 G A ICAM4 Silent p.K35K 0.24 TCGA-95-7562-01 19 12807321 12807321 G C FBXW9 Missense_Mutation p.D25E 0.35 deleterious_low_confidence(0.03) probably_damaging(0.986) TCGA-95-7562-01 19 14938434 14938434 C A OR7A5 Missense_Mutation p.G207V 0.37 tolerated_low_confidence(0.11) benign(0.139) TCGA-95-7562-01 19 15648690 15648690 G T CYP4F22 Missense_Mutation p.W186L 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-95-7562-01 19 16539513 16539513 C A EPS15L1 Silent p.V186V 0.23 TCGA-95-7562-01 19 17452109 17452109 C A GTPBP3 Missense_Mutation p.L443M 0.21 tolerated(0.07) probably_damaging(1) TCGA-95-7562-01 19 2102141 2102141 C G AP3D1 3'UTR 0.34 TCGA-95-7562-01 19 22002012 22002012 T C ZNF43 Silent p.T5T 0.41 TCGA-95-7562-01 19 24102162 24102162 G C ZNF726 Intron 0.17 TCGA-95-7562-01 19 2790430 2790430 G T THOP1 Missense_Mutation p.D10Y 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.647) TCGA-95-7562-01 19 31038921 31038921 G A ZNF536 Missense_Mutation p.E799K 0.32 deleterious(0.02) probably_damaging(0.993) TCGA-95-7562-01 19 35251148 35251148 T C ZNF599 Silent p.P186P 0.36 TCGA-95-7562-01 19 36231353 36231353 G A IGFLR1 Silent p.S90S 0.37 TCGA-95-7562-01 19 37482711 37482711 G T ZNF568 Missense_Mutation p.W132C 0.31 deleterious(0) probably_damaging(0.995) TCGA-95-7562-01 19 38910609 38910609 G T RASGRP4 Missense_Mutation p.P185Q 0.48 deleterious(0) probably_damaging(0.999) TCGA-95-7562-01 19 39412260 39412260 C A SARS2 Intron 0.41 TCGA-95-7562-01 19 41599562 41599562 T A CYP2A13 Missense_Mutation p.Y287N 0.45 tolerated(0.58) benign(0.016) TCGA-95-7562-01 19 41838172 41838174 TTC - TGFB1 In_Frame_Del p.K291del 0.55 TCGA-95-7562-01 19 43763037 43763037 G C PSG9 Silent p.R320R 0.23 TCGA-95-7562-01 19 4491805 4491805 G T HDGFRP2 Missense_Mutation p.R217S 0.45 deleterious(0.02) unknown(0) TCGA-95-7562-01 19 47940752 47940752 C A SLC8A2 Nonsense_Mutation p.E693* 0.34 TCGA-95-7562-01 19 48244466 48244466 C T EHD2 Missense_Mutation p.S470F 0.17 deleterious(0.01) possibly_damaging(0.56) TCGA-95-7562-01 19 49102508 49102508 G C SULT2B1 Missense_Mutation p.E315Q 0.22 tolerated(0.13) unknown(0) TCGA-95-7562-01 19 50885780 50885780 C G NR1H2 Missense_Mutation p.S435W 0.40 deleterious(0) probably_damaging(1) TCGA-95-7562-01 19 52249355 52249355 G T FPR1 Missense_Mutation p.P298H 0.36 deleterious(0) probably_damaging(1) TCGA-95-7562-01 19 53762646 53762646 C G VN1R2 Missense_Mutation p.L340V 0.35 tolerated(0.26) benign(0.387) TCGA-95-7562-01 19 54313975 54313975 C A NLRP12 Missense_Mutation p.C313F 0.14 deleterious(0.02) possibly_damaging(0.761) TCGA-95-7562-01 19 54598537 54598537 G T OSCAR 3'UTR 0.43 TCGA-95-7562-01 19 55106225 55106225 C G LILRA1 Missense_Mutation p.Q56E 0.32 tolerated(0.38) benign(0.025) TCGA-95-7562-01 19 55175025 55175025 G T LILRB4 Missense_Mutation p.G24W 0.18 deleterious(0) probably_damaging(0.987) TCGA-95-7562-01 19 55743285 55743285 C G PPP6R1 Missense_Mutation p.G731R 0.40 tolerated(0.67) benign(0.002) TCGA-95-7562-01 19 56473463 56473463 G T NLRP8 Missense_Mutation p.W691C 0.41 tolerated(0.32) probably_damaging(0.998) TCGA-95-7562-01 19 57175068 57175068 G A ZNF835 Missense_Mutation p.S500L 0.35 tolerated(0.05) benign(0.007) TCGA-95-7562-01 19 57325967 57325967 G T PEG3 Silent p.L1281L 0.29 TCGA-95-7562-01 19 57327815 57327815 G A PEG3 Silent p.T665T 0.43 TCGA-95-7562-01 19 58018464 58018464 G T ZNF773 Missense_Mutation p.S334I 0.17 tolerated(0.21) benign(0.424) TCGA-95-7562-01 19 8841578 8841578 T G OR2Z1 Missense_Mutation p.L63R 0.09 deleterious(0) probably_damaging(0.999) TCGA-95-7562-01 19 9007522 9007522 G T MUC16 Missense_Mutation p.T13149N 0.30 probably_damaging(0.931) TCGA-95-7562-01 19 9062824 9062824 C A MUC16 Missense_Mutation p.G8208W 0.43 unknown(0) TCGA-95-7562-01 1 103467525 103467525 C A COL11A1 Missense_Mutation p.G700C 0.39 unknown(0) TCGA-95-7562-01 1 1223178 1223178 G A SCNN1D Missense_Mutation p.V509I 0.25 tolerated(1) benign(0.002) TCGA-95-7562-01 1 147380309 147380309 G T GJA8 Missense_Mutation p.R76L 0.47 deleterious(0) probably_damaging(0.999) TCGA-95-7562-01 1 152287234 152287234 G T FLG Intron 0.45 TCGA-95-7562-01 1 152325157 152325157 G C FLG2 Missense_Mutation p.T1702S 0.46 benign(0.292) TCGA-95-7562-01 1 152857284 152857284 G T SMCP 3'UTR 0.27 TCGA-95-7562-01 1 153043072 153043072 A G SPRR2B 3'UTR 0.49 TCGA-95-7562-01 1 153347001 153347001 C T S100A12 Missense_Mutation p.G23E 0.24 deleterious(0.03) probably_damaging(0.919) TCGA-95-7562-01 1 158687916 158687916 G T OR6K3 5'Flank 0.53 TCGA-95-7562-01 1 158725613 158725613 G A OR6K6 Silent p.K336K 0.38 TCGA-95-7562-01 1 165175215 165175215 C A LMX1A Missense_Mutation p.A292S 0.22 tolerated(0.87) benign(0.007) TCGA-95-7562-01 1 17682506 17682506 C A PADI4 Missense_Mutation p.L447M 0.51 deleterious(0) probably_damaging(0.984) TCGA-95-7562-01 1 176926897 176926897 G C ASTN1 Missense_Mutation p.R602G 0.44 deleterious(0) probably_damaging(0.996) TCGA-95-7562-01 1 177001610 177001610 C A ASTN1 Missense_Mutation p.G283W 0.45 deleterious_low_confidence(0) possibly_damaging(0.569) TCGA-95-7562-01 1 181708314 181708314 G T CACNA1E Missense_Mutation p.G1215V 0.14 deleterious(0) probably_damaging(0.998) TCGA-95-7562-01 1 182025565 182025565 G T ZNF648 Missense_Mutation p.N527K 0.45 deleterious(0.02) probably_damaging(0.964) TCGA-95-7562-01 1 185116352 185116355 GTAA - TRMT1L Frame_Shift_Del p.P163Vfs*4 0.21 TCGA-95-7562-01 1 19181045 19181045 C A TAS1R2 Missense_Mutation p.D307Y 0.58 deleterious(0) probably_damaging(0.999) TCGA-95-7562-01 1 197070953 197070955 CTT - ASPM In_Frame_Del p.K2476del 0.19 TCGA-95-7562-01 1 197403858 197403858 T C CRB1 Silent p.N955N 0.18 TCGA-95-7562-01 1 204588190 204588190 C A LRRN2 Nonsense_Mutation p.E311* 0.51 TCGA-95-7562-01 1 207782968 207782968 G T CR1 Missense_Mutation p.G2077V 0.60 deleterious(0) probably_damaging(1) TCGA-95-7562-01 1 209790826 209790826 G A LAMB3 Nonsense_Mutation p.Q1053* 0.08 TCGA-95-7562-01 1 210415446 210415446 G T SERTAD4 Missense_Mutation p.A279S 0.38 tolerated(0.29) benign(0.001) TCGA-95-7562-01 1 22181464 22181464 G T HSPG2 Missense_Mutation p.R2004S 0.55 benign(0.064) TCGA-95-7562-01 1 228473958 228473958 G C OBSCN Missense_Mutation p.V3491L 0.58 benign(0.131) TCGA-95-7562-01 1 233507807 233507807 C T MLK4 Nonsense_Mutation p.Q526* 0.22 TCGA-95-7562-01 1 233507808 233507808 A G MLK4 Missense_Mutation p.Q526R 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-95-7562-01 1 235896917 235896917 A T LYST Missense_Mutation p.L2896H 0.10 tolerated(0.1) probably_damaging(0.998) TCGA-95-7562-01 1 237001848 237001849 - A MTR Frame_Shift_Ins p.Y491Vfs*11 0.35 TCGA-95-7562-01 1 240286574 240286576 CTC - FMN2 In_Frame_Del p.L572del 0.26 TCGA-95-7562-01 1 241714305 241714305 A T KMO Silent p.S91S 0.52 TCGA-95-7562-01 1 242159429 242159429 C A MAP1LC3C 3'UTR 0.61 TCGA-95-7562-01 1 247588620 247588620 C A NLRP3 Silent p.P625P 0.58 TCGA-95-7562-01 1 247654851 247654851 G T OR2W5 RNA 0.30 TCGA-95-7562-01 1 248058987 248058987 C G OR2W3 Missense_Mutation p.I33M 0.20 deleterious(0.03) possibly_damaging(0.531) TCGA-95-7562-01 1 248202303 248202303 C T OR2L2 Missense_Mutation p.T245I 0.20 tolerated(0.17) benign(0.362) TCGA-95-7562-01 1 248202304 248202304 T G OR2L2 Silent p.T245T 0.20 TCGA-95-7562-01 1 248262747 248262747 A T OR2L13 Missense_Mutation p.I24L 0.22 tolerated(1) benign(0) TCGA-95-7562-01 1 248570136 248570136 G T OR2T1 Missense_Mutation p.V281L 0.47 deleterious(0.04) benign(0.02) TCGA-95-7562-01 1 248636759 248636759 C A OR2T3 Silent p.T36T 0.14 TCGA-95-7562-01 1 248685497 248685497 C A OR2G6 Missense_Mutation p.L184I 0.58 tolerated(0.13) benign(0.361) TCGA-95-7562-01 1 35370468 35370468 G T DLGAP3 Missense_Mutation p.L173M 0.27 deleterious(0) probably_damaging(0.99) TCGA-95-7562-01 1 36439068 36439068 A T AGO3 Missense_Mutation p.Q205L 0.52 deleterious(0) probably_damaging(0.984) TCGA-95-7562-01 1 3679878 3679878 G C CCDC27 Missense_Mutation p.R387S 0.23 tolerated(0.58) benign(0.029) TCGA-95-7562-01 1 3786208 3786208 G T DFFB Nonsense_Mutation p.E184* 0.53 TCGA-95-7562-01 1 39816643 39816643 G T MACF1 Nonsense_Mutation p.E1656* 0.40 TCGA-95-7562-01 1 46106022 46106022 A G GPBP1L1 Missense_Mutation p.S202P 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-95-7562-01 1 47264783 47264785 CTC - CYP4B1 In_Frame_Del p.S12del 0.28 TCGA-95-7562-01 1 47338978 47338978 G T CYP4Z2P RNA 0.16 TCGA-95-7562-01 1 50659564 50659564 C A ELAVL4 Nonsense_Mutation p.S178* 0.45 TCGA-95-7562-01 1 54262662 54262662 C A NDC1 Missense_Mutation p.A460S 0.50 tolerated(0.19) benign(0.038) TCGA-95-7562-01 1 57425840 57425840 C A C8B Missense_Mutation p.R34S 0.18 deleterious(0.05) benign(0.108) TCGA-95-7562-01 1 64022900 64022900 G T EFCAB7 Missense_Mutation p.A444S 0.58 deleterious(0.01) possibly_damaging(0.792) TCGA-95-7562-01 1 67371051 67371051 C A WDR78 Missense_Mutation p.A60S 0.40 tolerated_low_confidence(0.98) benign(0.001) TCGA-95-7562-01 1 74929136 74929136 G T TNNI3K Missense_Mutation p.A776S 0.50 tolerated(0.07) possibly_damaging(0.827) TCGA-95-7562-01 1 75038366 75038366 C A C1orf173 Nonsense_Mutation p.E1010* 0.53 TCGA-95-7562-01 1 75038367 75038367 C A C1orf173 Silent p.S1009S 0.52 TCGA-95-7562-01 1 78098983 78098983 C A ZZZ3 Missense_Mutation p.L19F 0.52 deleterious(0) probably_damaging(0.999) TCGA-95-7562-01 1 79121080 79121080 G T IFI44 Missense_Mutation p.G242C 0.49 deleterious(0) probably_damaging(0.962) TCGA-95-7562-01 1 8385953 8385953 A G SLC45A1 Missense_Mutation p.H189R 0.22 tolerated(0.31) possibly_damaging(0.512) TCGA-95-7562-01 1 84348659 84348659 A T TTLL7 Missense_Mutation p.W844R 0.53 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-95-7562-01 1 874763 874763 G A SAMD11 Missense_Mutation p.R210H 0.08 tolerated(0.07) possibly_damaging(0.673) TCGA-95-7562-01 1 99422227 99422227 G T LPPR5 Missense_Mutation p.T103N 0.45 deleterious(0) possibly_damaging(0.548) TCGA-95-7562-01 1 99422237 99422237 G C LPPR5 Missense_Mutation p.Q100E 0.46 tolerated(0.36) benign(0.108) TCGA-95-7562-01 20 1905416 1905416 C T SIRPA Missense_Mutation p.T365I 0.49 tolerated(0.21) benign(0.004) TCGA-95-7562-01 20 30363695 30363695 G T TPX2 Nonsense_Mutation p.E212* 0.11 TCGA-95-7562-01 20 31017711 31017711 G T ASXL1 Silent p.S191S 0.19 TCGA-95-7562-01 20 34091725 34091725 T C CEP250 Missense_Mutation p.L1843P 0.45 probably_damaging(1) TCGA-95-7562-01 20 37546928 37546928 C T PPP1R16B Silent p.N441N 0.10 TCGA-95-7562-01 20 5170484 5170484 G T CDS2 Missense_Mutation p.R402I 0.58 deleterious(0) possibly_damaging(0.786) TCGA-95-7562-01 20 52602018 52602018 G T BCAS1 Silent p.T316T 0.45 TCGA-95-7562-01 20 57415335 57415335 C A RP4-806M20.3 5'Flank 0.58 TCGA-95-7562-01 20 58467696 58467696 C A SYCP2 Missense_Mutation p.W618C 0.40 tolerated(0.08) probably_damaging(0.999) TCGA-95-7562-01 20 9496200 9496200 G T LAMP5 Silent p.T55T 0.47 TCGA-95-7562-01 21 10959760 10959760 C A TPTE Nonsense_Mutation p.E72* 0.20 TCGA-95-7562-01 21 10998262 10998262 C A TPTE RNA 0.23 TCGA-95-7562-01 21 11097555 11097555 C A BAGE2 RNA 0.10 TCGA-95-7562-01 21 19725322 19725322 C - TMPRSS15 Frame_Shift_Del p.V357Sfs*4 0.35 TCGA-95-7562-01 21 28212773 28212773 G T ADAMTS1 Missense_Mutation p.S496Y 0.56 tolerated(0.79) probably_damaging(1) TCGA-95-7562-01 21 31015275 31015275 C A GRIK1 Silent p.L323L 0.59 TCGA-95-7562-01 21 46020563 46020563 C T KRTAP10-7 Silent p.S14S 0.49 TCGA-95-7562-01 22 17073447 17073447 C A CCT8L2 5'UTR 0.28 TCGA-95-7562-01 22 21153433 21153433 G A PI4KA Missense_Mutation p.P651L 0.17 deleterious(0.05) benign(0.028) TCGA-95-7562-01 22 24837129 24837129 G A ADORA2A Missense_Mutation p.R304H 0.31 tolerated(0.15) benign(0.001) TCGA-95-7562-01 22 26688869 26688869 G T SEZ6L Missense_Mutation p.A198S 0.40 tolerated(0.2) benign(0.041) TCGA-95-7562-01 22 38695939 38695941 TCT - CSNK1E In_Frame_Del p.K232del 0.17 TCGA-95-7562-01 2 110053404 110053404 C A SH3RF3 Missense_Mutation p.L544M 0.57 tolerated(0.21) possibly_damaging(0.781) TCGA-95-7562-01 2 141739825 141739825 G C LRP1B Missense_Mutation p.Q931E 0.57 possibly_damaging(0.665) TCGA-95-7562-01 2 152381116 152381117 TT - NEB Frame_Shift_Del p.K7429Rfs*13 0.19 TCGA-95-7562-01 2 15307344 15307344 T A NBAS Missense_Mutation p.H2315L 0.52 deleterious(0.02) benign(0.282) TCGA-95-7562-01 2 167149859 167149859 C A SCN9A Missense_Mutation p.C330F 0.83 deleterious(0) probably_damaging(1) TCGA-95-7562-01 2 173351781 173351781 G A ITGA6 Missense_Mutation p.D629N 0.20 deleterious(0) probably_damaging(0.991) TCGA-95-7562-01 2 183608325 183608325 G T DNAJC10 Missense_Mutation p.V398F 0.51 deleterious(0) possibly_damaging(0.659) TCGA-95-7562-01 2 183943749 183943749 A T DUSP19 Nonsense_Mutation p.K30* 0.40 TCGA-95-7562-01 2 192160877 192160877 G T MYO1B Missense_Mutation p.R59L 0.47 deleterious(0.01) possibly_damaging(0.477) TCGA-95-7562-01 2 196651890 196651890 T A DNAH7 Missense_Mutation p.E3574D 0.72 tolerated(0.59) benign(0.243) TCGA-95-7562-01 2 196740502 196740502 C A DNAH7 Missense_Mutation p.E2061D 0.53 deleterious(0) probably_damaging(1) TCGA-95-7562-01 2 197953451 197953451 C A ANKRD44 Missense_Mutation p.A386S 0.58 tolerated(0.06) probably_damaging(0.999) TCGA-95-7562-01 2 203155894 203155896 AGA - NOP58 In_Frame_Del p.E229del 0.36 TCGA-95-7562-01 2 212576813 212576813 G C ERBB4 Missense_Mutation p.I362M 0.57 deleterious(0) probably_damaging(0.998) TCGA-95-7562-01 2 212578371 212578371 T A ERBB4 Missense_Mutation p.N296Y 0.85 deleterious(0.02) probably_damaging(0.998) TCGA-95-7562-01 2 214204941 214204941 G T SPAG16 Missense_Mutation p.M197I 0.64 deleterious(0.04) benign(0.039) TCGA-95-7562-01 2 220082438 220082438 T C ABCB6 Missense_Mutation p.Y214C 0.65 tolerated(0.05) probably_damaging(0.94) TCGA-95-7562-01 2 220333888 220333888 G A SPEG Missense_Mutation p.E1168K 0.49 probably_damaging(0.995) TCGA-95-7562-01 2 233321649 233321649 C T ALPI Missense_Mutation p.T114I 0.76 deleterious(0) probably_damaging(1) TCGA-95-7562-01 2 238243323 238243328 CCACAG - COL6A3 In_Frame_Del p.A3057_V3058del 0.72 TCGA-95-7562-01 2 238289629 238289629 C T COL6A3 Missense_Mutation p.R609Q 0.15 possibly_damaging(0.49) TCGA-95-7562-01 2 37126778 37126778 G A STRN Missense_Mutation p.A228V 0.61 tolerated(0.08) benign(0.072) TCGA-95-7562-01 2 61632973 61632974 TT - USP34 Frame_Shift_Del p.K141Efs*3 0.22 TCGA-95-7562-01 2 79314712 79314712 C A REG1B Missense_Mutation p.M9I 0.61 tolerated(0.64) benign(0) TCGA-95-7562-01 3 105086174 105086174 C A ALCAM 5'UTR 0.36 TCGA-95-7562-01 3 11059622 11059622 G T SLC6A1 Missense_Mutation p.G111V 0.42 deleterious(0) probably_damaging(0.967) TCGA-95-7562-01 3 112198471 112198473 TGT - BTLA In_Frame_Del p.T78del 0.21 TCGA-95-7562-01 3 113323796 113323796 G T SIDT1 Silent p.V459V 0.44 TCGA-95-7562-01 3 115395234 115395234 C G GAP43 Silent p.A171A 0.43 TCGA-95-7562-01 3 119456314 119456314 G T MAATS1 Missense_Mutation p.L482F 0.31 deleterious(0.04) benign(0.211) TCGA-95-7562-01 3 119501603 119501603 G T NR1I2 5'UTR 0.44 TCGA-95-7562-01 3 120998777 120998777 C A STXBP5L Missense_Mutation p.P695H 0.44 deleterious(0) probably_damaging(0.999) TCGA-95-7562-01 3 122284747 122284747 G A DTX3L Missense_Mutation p.V77I 0.44 tolerated(0.56) benign(0.034) TCGA-95-7562-01 3 122354777 122354777 G A PARP15 Missense_Mutation p.G623R 0.16 deleterious(0) probably_damaging(1) TCGA-95-7562-01 3 122647398 122647398 G T SEMA5B Missense_Mutation p.T255N 0.61 deleterious(0) probably_damaging(1) TCGA-95-7562-01 3 123383052 123383052 G A MYLK Silent p.L1295L 0.41 TCGA-95-7562-01 3 124196166 124196166 G T KALRN Silent p.A1390A 0.34 TCGA-95-7562-01 3 129140527 129140527 G A EFCAB12 Missense_Mutation p.R57W 0.26 deleterious(0) probably_damaging(1) TCGA-95-7562-01 3 130399505 130399505 T A PIK3R4 Silent p.P1286P 0.26 TCGA-95-7562-01 3 137811270 137811270 C A DZIP1L Missense_Mutation p.W275C 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-95-7562-01 3 141697431 141697431 C A TFDP2 Silent p.S150S 0.43 TCGA-95-7562-01 3 147128303 147128303 C A ZIC1 Missense_Mutation p.T135K 0.29 tolerated(0.17) benign(0.093) TCGA-95-7562-01 3 147128526 147128526 C A ZIC1 Silent p.G209G 0.38 TCGA-95-7562-01 3 151127030 151127030 G T MED12L Splice_Site p.X1906_splice 0.37 TCGA-95-7562-01 3 167254657 167254657 C A WDR49 Splice_Site p.X300_splice 0.12 TCGA-95-7562-01 3 170716071 170716071 G C SLC2A2 Missense_Mutation p.Q429E 0.46 deleterious(0) probably_damaging(0.999) TCGA-95-7562-01 3 178916938 178916940 GAA - PIK3CA In_Frame_Del p.E110del 0.26 TCGA-95-7562-01 3 186272084 186272084 T A TBCCD1 Silent p.I501I 0.21 TCGA-95-7562-01 3 194790352 194790352 C A XXYLT1 3'UTR 0.24 TCGA-95-7562-01 3 38913149 38913149 C G SCN11A Missense_Mutation p.L1182F 0.41 deleterious(0) probably_damaging(1) TCGA-95-7562-01 3 46062775 46062775 C G XCR1 Missense_Mutation p.R222P 0.50 deleterious(0) probably_damaging(0.999) TCGA-95-7562-01 3 47044544 47044544 G T NBEAL2 Nonsense_Mutation p.E1853* 0.48 TCGA-95-7562-01 3 47882406 47882406 G C DHX30 Missense_Mutation p.A136P 0.09 tolerated_low_confidence(0.11) possibly_damaging(0.642) TCGA-95-7562-01 3 48460384 48460384 C A PLXNB1 Missense_Mutation p.R966L 0.09 tolerated(0.65) benign(0.001) TCGA-95-7562-01 3 49698362 49698362 C T BSN Silent p.P3028P 0.44 TCGA-95-7562-01 3 52256866 52256866 G T TLR9 Missense_Mutation p.P643Q 0.48 tolerated(0.12) benign(0.273) TCGA-95-7562-01 3 64554096 64554096 C G ADAMTS9 Missense_Mutation p.R1491T 0.26 deleterious(0.03) benign(0.444) TCGA-95-7562-01 3 73450153 73450153 A T PDZRN3 Missense_Mutation p.S392T 0.44 tolerated(0.51) benign(0.002) TCGA-95-7562-01 3 77638012 77638012 G A ROBO2 Missense_Mutation p.V887I 0.39 tolerated(0.58) benign(0.097) TCGA-95-7562-01 3 77657049 77657049 C G ROBO2 Silent p.V1095V 0.12 TCGA-95-7562-01 3 97851698 97851698 C A OR5H1 Missense_Mutation p.P53T 0.26 tolerated(0.06) benign(0.394) TCGA-95-7562-01 3 98216908 98216908 C G OR5K2 Missense_Mutation p.N128K 0.43 tolerated(0.42) benign(0.01) TCGA-95-7562-01 4 115891588 115891588 G T NDST4 Missense_Mutation p.L407M 0.32 tolerated(0.14) benign(0.016) TCGA-95-7562-01 4 126412874 126412874 G T FAT4 Missense_Mutation p.G4966V 0.35 possibly_damaging(0.717) TCGA-95-7562-01 4 151412075 151412075 T A LRBA Missense_Mutation p.N2159I 0.27 deleterious(0.02) probably_damaging(0.971) TCGA-95-7562-01 4 152049369 152049369 T A SH3D19 Missense_Mutation p.Q704L 0.23 deleterious(0.03) benign(0.102) TCGA-95-7562-01 4 162463774 162463774 G T FSTL5 Missense_Mutation p.H363N 0.33 deleterious(0) probably_damaging(0.952) TCGA-95-7562-01 4 166964426 166964426 C G TLL1 Missense_Mutation p.A460G 0.35 deleterious(0) possibly_damaging(0.825) TCGA-95-7562-01 4 171010866 171010868 CTT - AADAT 5'UTR 0.11 TCGA-95-7562-01 4 177069351 177069351 G T WDR17 Missense_Mutation p.V612L 0.34 deleterious(0) probably_damaging(0.997) TCGA-95-7562-01 4 183522201 183522201 G A TENM3 Silent p.R212R 0.39 TCGA-95-7562-01 4 183721399 183721399 G T TENM3 Missense_Mutation p.Q2665H 0.57 deleterious(0.01) possibly_damaging(0.781) TCGA-95-7562-01 4 184932078 184932078 A G STOX2 Missense_Mutation p.E696G 0.14 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-95-7562-01 4 185045392 185045392 G T ENPP6 Missense_Mutation p.T152N 0.41 tolerated(0.19) benign(0.015) TCGA-95-7562-01 4 22389413 22389413 C G GPR125 Missense_Mutation p.S1294T 0.24 tolerated(0.11) benign(0.001) TCGA-95-7562-01 4 25005367 25005367 C A LGI2 Missense_Mutation p.W448C 0.35 deleterious(0) probably_damaging(1) TCGA-95-7562-01 4 437208 437208 C A ZNF721 Missense_Mutation p.V350L 0.17 tolerated(0.36) benign(0.004) TCGA-95-7562-01 4 55972008 55972008 G A KDR Missense_Mutation p.H546Y 0.36 tolerated(0.88) probably_damaging(0.992) TCGA-95-7562-01 4 57181911 57181911 G T KIAA1211 Missense_Mutation p.R748I 0.29 tolerated(0.13) possibly_damaging(0.506) TCGA-95-7562-01 4 57797951 57797951 C T REST Missense_Mutation p.P976L 0.32 deleterious(0) benign(0.08) TCGA-95-7562-01 4 6925430 6925430 G T TBC1D14 Missense_Mutation p.C105F 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.62) TCGA-95-7562-01 4 70799954 70799954 C T CSN1S1 Missense_Mutation p.R26C 0.18 tolerated(0.19) benign(0.043) TCGA-95-7562-01 4 71024512 71024512 G T C4orf40 Missense_Mutation p.E181D 0.40 tolerated(0.37) unknown(0) TCGA-95-7562-01 4 780285 780285 G T CPLX1 3'UTR 0.69 TCGA-95-7562-01 4 82056432 82056432 G T PRKG2 Silent p.P551P 0.22 TCGA-95-7562-01 4 95444992 95444992 G C PDLIM5 Missense_Mutation p.G72R 0.44 deleterious(0) benign(0.125) TCGA-95-7562-01 5 107700563 107700563 T C FBXL17 Missense_Mutation p.Y417C 0.59 deleterious(0) probably_damaging(0.983) TCGA-95-7562-01 5 115335516 115335516 G A AQPEP Missense_Mutation p.V478M 0.57 tolerated(0.29) benign(0.166) TCGA-95-7562-01 5 123982821 123982821 C A ZNF608 Missense_Mutation p.G1086W 0.44 deleterious(0.01) probably_damaging(1) TCGA-95-7562-01 5 126734390 126734390 G T MEGF10 Missense_Mutation p.G228C 0.56 deleterious(0) probably_damaging(0.936) TCGA-95-7562-01 5 131705726 131705728 TCT - SLC22A5 In_Frame_Del p.F23del 0.35 TCGA-95-7562-01 5 140166090 140166090 G T PCDHA1 Missense_Mutation p.R72M 0.72 deleterious_low_confidence(0.02) benign(0.271) TCGA-95-7562-01 5 140174761 140174761 A C PCDHA2 Missense_Mutation p.H71P 0.40 deleterious_low_confidence(0.02) benign(0.027) TCGA-95-7562-01 5 140174763 140174763 G T PCDHA2 Missense_Mutation p.G72W 0.41 deleterious_low_confidence(0) possibly_damaging(0.688) TCGA-95-7562-01 5 140174764 140174764 G T PCDHA2 Missense_Mutation p.G72V 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.622) TCGA-95-7562-01 5 140530858 140530858 C A PCDHB6 Missense_Mutation p.D340E 0.68 deleterious(0) possibly_damaging(0.749) TCGA-95-7562-01 5 140558509 140558509 G T PCDHB8 Missense_Mutation p.L298F 0.34 tolerated_low_confidence(0.31) benign(0.003) TCGA-95-7562-01 5 140589931 140589931 C A PCDHB12 Silent p.A484A 0.65 TCGA-95-7562-01 5 140590226 140590226 G T PCDHB12 Missense_Mutation p.G583C 0.38 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-95-7562-01 5 140625198 140625200 CTT - PCDHB15 In_Frame_Del p.L19del 0.13 TCGA-95-7562-01 5 14693064 14693064 C - FAM105B Frame_Shift_Del p.P323Hfs*8 0.17 TCGA-95-7562-01 5 150275758 150275758 G T ZNF300 Missense_Mutation p.T364N 0.71 deleterious(0) possibly_damaging(0.683) TCGA-95-7562-01 5 159776207 159776207 A T C1QTNF2 Missense_Mutation p.Y321N 0.61 deleterious(0.02) benign(0.155) TCGA-95-7562-01 5 177733901 177733901 G T COL23A1 Silent p.G127G 0.62 TCGA-95-7562-01 5 178489016 178489016 A T ZNF354C Intron 0.62 TCGA-95-7562-01 5 179734272 179734274 CTC - GFPT2 In_Frame_Del p.E526del 0.19 TCGA-95-7562-01 5 36049001 36049001 G T UGT3A2 Missense_Mutation p.P278Q 0.06 deleterious(0.01) probably_damaging(0.991) TCGA-95-7562-01 5 37185083 37185083 C T C5orf42 Missense_Mutation p.E1430K 0.77 deleterious(0) probably_damaging(0.997) TCGA-95-7562-01 5 40972598 40972598 G C C7 Missense_Mutation p.C659S 0.58 deleterious(0) probably_damaging(0.999) TCGA-95-7562-01 5 41061726 41061726 G T MROH2B Missense_Mutation p.F187L 0.71 tolerated(0.2) benign(0.06) TCGA-95-7562-01 5 58271518 58271518 C A PDE4D Missense_Mutation p.C660F 0.68 deleterious_low_confidence(0) probably_damaging(1) TCGA-95-7562-01 5 61668339 61668341 CTT - KIF2A In_Frame_Del p.S575del 0.24 TCGA-95-7562-01 5 79797631 79797631 C A FAM151B Missense_Mutation p.L16M 0.53 deleterious(0.01) probably_damaging(0.94) TCGA-95-7562-01 6 10419772 10419774 TCC - TFAP2A 5'Flank 0.19 TCGA-95-7562-01 6 105548996 105548996 G A BVES Missense_Mutation p.P351S 0.34 tolerated_low_confidence(0.16) benign(0.001) TCGA-95-7562-01 6 117019962 117019962 G T KPNA5 Splice_Site p.X145_splice 0.42 TCGA-95-7562-01 6 129712788 129712788 G T LAMA2 Missense_Mutation p.D1742Y 0.41 tolerated(0.06) probably_damaging(0.914) TCGA-95-7562-01 6 137479540 137479540 C - IL22RA2 Frame_Shift_Del p.W47Cfs*26 0.28 TCGA-95-7562-01 6 139694476 139694476 G A CITED2 Silent p.P202P 0.47 TCGA-95-7562-01 6 151671532 151671532 C A AKAP12 Missense_Mutation p.P669Q 0.30 deleterious(0) probably_damaging(0.976) TCGA-95-7562-01 6 152702486 152702489 ATCT - SYNE1 Frame_Shift_Del p.D2888Pfs*19 0.29 TCGA-95-7562-01 6 15468783 15468783 G C JARID2 Silent p.A168A 0.15 TCGA-95-7562-01 6 160671617 160671617 C G SLC22A2 Silent p.L212L 0.06 TCGA-95-7562-01 6 160908411 160908411 C A LPAL2 RNA 0.29 TCGA-95-7562-01 6 161026124 161026124 T C LPA Missense_Mutation p.M967V 0.36 tolerated(0.11) probably_damaging(0.968) TCGA-95-7562-01 6 161134091 161134091 G T PLG Missense_Mutation p.G161W 0.30 deleterious(0) probably_damaging(0.998) TCGA-95-7562-01 6 31324481 31324483 GTA - HLA-B In_Frame_Del p.Y109del 0.52 TCGA-95-7562-01 6 32944099 32944101 CTC - BRD2 In_Frame_Del p.P231del 0.21 TCGA-95-7562-01 6 35280196 35280196 G T DEF6 Missense_Mutation p.V181F 0.22 deleterious(0) probably_damaging(0.994) TCGA-95-7562-01 6 4130840 4130840 A C C6orf201 3'UTR 0.26 TCGA-95-7562-01 6 41558085 41558085 G C FOXP4 Missense_Mutation p.Q478H 0.17 tolerated(0.07) benign(0.147) TCGA-95-7562-01 6 42893292 42893292 C A PTCRA Missense_Mutation p.L240I 0.39 tolerated_low_confidence(0.28) benign(0.022) TCGA-95-7562-01 6 47646774 47646774 A G GPR111 Silent p.P125P 0.42 TCGA-95-7562-01 6 49803073 49803073 G T CRISP1 Missense_Mutation p.L236I 0.26 tolerated(0.18) benign(0.259) TCGA-95-7562-01 6 51701234 51701234 C A PKHD1 Missense_Mutation p.R2714L 0.42 tolerated(0.12) benign(0) TCGA-95-7562-01 6 51923249 51923249 C T PKHD1 Missense_Mutation p.A462T 0.23 tolerated(0.35) benign(0.019) TCGA-95-7562-01 6 70935688 70935688 C T COL9A1 Missense_Mutation p.R843H 0.26 probably_damaging(0.966) TCGA-95-7562-01 6 7231723 7231723 G T RREB1 Missense_Mutation p.A1131S 0.23 tolerated(0.37) benign(0.316) TCGA-95-7562-01 6 73000514 73000514 G C RIMS1 Missense_Mutation p.M1229I 0.25 tolerated(0.06) benign(0) TCGA-95-7562-01 6 84302942 84302942 G A SNAP91 Missense_Mutation p.P578L 0.31 tolerated(0.2) possibly_damaging(0.869) TCGA-95-7562-01 6 96651518 96651518 G A FUT9 Missense_Mutation p.D163N 0.21 tolerated(0.06) possibly_damaging(0.835) TCGA-95-7562-01 6 97676848 97676848 C G MMS22L Missense_Mutation p.S654T 0.31 tolerated(0.29) benign(0.007) TCGA-95-7562-01 7 100352852 100352852 G T ZAN Missense_Mutation p.R1043L 0.24 unknown(0) TCGA-95-7562-01 7 100485430 100485430 G T SRRT Missense_Mutation p.R759L 0.35 deleterious(0) benign(0.16) TCGA-95-7562-01 7 102004817 102004818 CT - PRKRIP1 5'UTR 0.27 TCGA-95-7562-01 7 103163848 103163848 C A RELN Nonsense_Mutation p.G2494* 0.47 TCGA-95-7562-01 7 11675996 11675996 G T THSD7A Missense_Mutation p.S261R 0.62 deleterious(0.01) probably_damaging(0.922) TCGA-95-7562-01 7 120935786 120935786 A T CPED1 3'UTR 0.33 TCGA-95-7562-01 7 126173247 126173247 G A GRM8 Missense_Mutation p.T730I 0.26 tolerated(0.15) probably_damaging(0.999) TCGA-95-7562-01 7 126173414 126173414 G C GRM8 Missense_Mutation p.H674Q 0.23 tolerated(0.06) probably_damaging(0.999) TCGA-95-7562-01 7 127014829 127014829 C A ZNF800 Missense_Mutation p.E187D 0.38 tolerated(0.37) benign(0) TCGA-95-7562-01 7 128483620 128483620 G A FLNC Missense_Mutation p.A934T 0.14 deleterious(0) possibly_damaging(0.502) TCGA-95-7562-01 7 128486942 128486942 G T FLNC Missense_Mutation p.G1424V 0.17 deleterious(0) probably_damaging(1) TCGA-95-7562-01 7 142148962 142148962 C A TRBV5-5 Silent p.G103G 0.41 TCGA-95-7562-01 7 142250739 142250739 G T TRBV6-4 Missense_Mutation p.S103Y 0.18 deleterious(0) possibly_damaging(0.884) TCGA-95-7562-01 7 146829491 146829491 G T CNTNAP2 Missense_Mutation p.S413I 0.55 tolerated(0.11) benign(0.081) TCGA-95-7562-01 7 148767405 148767407 AAG - ZNF786 3'UTR 0.20 TCGA-95-7562-01 7 150069954 150069954 G T REPIN1 Missense_Mutation p.A599S 0.36 deleterious(0.02) benign(0.087) TCGA-95-7562-01 7 150779461 150779461 C T TMUB1 Missense_Mutation p.G64R 0.48 tolerated(0.07) benign(0.002) TCGA-95-7562-01 7 157178347 157178347 G C DNAJB6 Intron 0.11 TCGA-95-7562-01 7 29105649 29105650 AA - CPVL Frame_Shift_Del p.L318Afs*6 0.23 TCGA-95-7562-01 7 41729729 41729729 C A INHBA Missense_Mutation p.G267V 0.27 tolerated_low_confidence(0.4) benign(0.001) TCGA-95-7562-01 7 43484399 43484399 A T HECW1 Missense_Mutation p.E543V 0.19 deleterious_low_confidence(0) possibly_damaging(0.723) TCGA-95-7562-01 7 44150555 44150555 A T AEBP1 Missense_Mutation p.E510V 0.45 deleterious(0.02) probably_damaging(0.972) TCGA-95-7562-01 7 44574134 44574134 C T NPC1L1 Missense_Mutation p.R693H 0.15 deleterious(0) possibly_damaging(0.627) TCGA-95-7562-01 7 57187634 57187634 T A ZNF479 Missense_Mutation p.E496D 0.24 deleterious(0.01) benign(0.334) TCGA-95-7562-01 7 65554161 65554161 G T ASL Missense_Mutation p.R306L 0.57 tolerated(0.14) benign(0.006) TCGA-95-7562-01 7 73477534 73477534 G T ELN Missense_Mutation p.G613V 0.22 unknown(0) TCGA-95-7562-01 7 7613214 7613214 T C MIOS Missense_Mutation p.C370R 0.25 tolerated(0.37) possibly_damaging(0.888) TCGA-95-7562-01 7 76825712 76825712 G C FGL2 Missense_Mutation p.R402G 0.21 deleterious(0.01) probably_damaging(0.991) TCGA-95-7562-01 7 8181394 8181394 C A ICA1 Splice_Site p.X319_splice 0.38 TCGA-95-7562-01 7 82476452 82476453 CA - PCLO Splice_Site p.X4588_splice 0.18 TCGA-95-7562-01 7 87911912 87911912 C A STEAP4 Intron 0.48 TCGA-95-7562-01 7 92028306 92028306 G T ANKIB1 3'UTR 0.26 TCGA-95-7562-01 7 92821673 92821673 G T HEPACAM2 Missense_Mutation p.P427T 0.39 tolerated(0.11) benign(0.146) TCGA-95-7562-01 7 99917425 99917427 GGA - SPDYE3 In_Frame_Del 0.28 TCGA-95-7562-01 8 106815675 106815675 G T ZFPM2 Missense_Mutation p.R1122L 0.34 deleterious(0) probably_damaging(0.999) TCGA-95-7562-01 8 110447569 110447569 C A PKHD1L1 Missense_Mutation p.S1164Y 0.36 deleterious(0) probably_damaging(0.995) TCGA-95-7562-01 8 110457589 110457589 C A PKHD1L1 Missense_Mutation p.P1831T 0.55 tolerated(0.13) benign(0.348) TCGA-95-7562-01 8 110457590 110457590 C G PKHD1L1 Missense_Mutation p.P1831R 0.55 tolerated(0.13) probably_damaging(0.937) TCGA-95-7562-01 8 116617099 116617101 TGT - TRPS1 In_Frame_Del p.Q365del 0.08 TCGA-95-7562-01 8 116631839 116631839 C A TRPS1 Missense_Mutation p.E162D 0.06 deleterious_low_confidence(0) benign(0.325) TCGA-95-7562-01 8 116631927 116631927 C - TRPS1 Frame_Shift_Del p.G133Efs*6 0.08 TCGA-95-7562-01 8 139144961 139144961 C T FAM135B Missense_Mutation p.V1366M 0.15 deleterious(0) probably_damaging(0.979) TCGA-95-7562-01 8 139642963 139642963 C A COL22A1 Missense_Mutation p.G1213V 0.43 unknown(0) TCGA-95-7562-01 8 139768066 139768066 C G COL22A1 Missense_Mutation p.V637L 0.08 unknown(0) TCGA-95-7562-01 8 143747263 143747263 T A JRK RNA 0.10 TCGA-95-7562-01 8 143996477 143996477 G C CYP11B2 Missense_Mutation p.H194D 0.33 tolerated(0.17) benign(0.216) TCGA-95-7562-01 8 17743046 17743046 A G FGL1 Silent p.S6S 0.32 TCGA-95-7562-01 8 1905156 1905156 C T ARHGEF10 Silent p.S1254S 0.08 TCGA-95-7562-01 8 24775346 24775346 C G NEFM Missense_Mutation p.P660A 0.27 deleterious(0.03) possibly_damaging(0.539) TCGA-95-7562-01 8 26267914 26267914 G T BNIP3L Missense_Mutation p.A216S 0.19 tolerated(0.2) benign(0.188) TCGA-95-7562-01 8 30954286 30954286 G T WRN Missense_Mutation p.G634V 0.25 deleterious(0) probably_damaging(0.993) TCGA-95-7562-01 8 32505335 32505335 G T NRG1 Intron 0.33 TCGA-95-7562-01 8 52325718 52325718 C A PXDNL Missense_Mutation p.L632F 0.20 deleterious(0.05) possibly_damaging(0.704) TCGA-95-7562-01 8 53570045 53570045 C T RB1CC1 Missense_Mutation p.V782I 0.28 tolerated_low_confidence(1) benign(0.001) TCGA-95-7562-01 8 67066418 67066418 C T TRIM55 Missense_Mutation p.P458L 0.20 tolerated_low_confidence(0.1) benign(0.002) TCGA-95-7562-01 8 68992769 68992769 T C PREX2 Silent p.L578L 0.18 TCGA-95-7562-01 8 69021748 69021748 G C PREX2 Missense_Mutation p.R1012S 0.30 tolerated_low_confidence(1) benign(0.062) TCGA-95-7562-01 8 85097165 85097165 G C RALYL 5'UTR 0.45 TCGA-95-7562-01 8 85441611 85441611 A T RALYL Missense_Mutation p.I32F 0.14 deleterious(0.02) possibly_damaging(0.818) TCGA-95-7562-01 8 87679324 87679324 A - CNGB3 Frame_Shift_Del p.A228Pfs*51 0.09 TCGA-95-7562-01 8 87683198 87683198 G T CNGB3 Missense_Mutation p.S156Y 0.15 deleterious(0) possibly_damaging(0.827) TCGA-95-7562-01 8 87878717 87878717 C T CNBD1 5'UTR 0.24 TCGA-95-7562-01 8 92030647 92030647 C T TMEM55A Missense_Mutation p.V153M 0.12 tolerated(0.08) possibly_damaging(0.836) TCGA-95-7562-01 9 100136836 100136836 C G CCDC180 Missense_Mutation p.P1582A 0.37 tolerated(0.09) possibly_damaging(0.728) TCGA-95-7562-01 9 115337178 115337178 C T KIAA1958 Missense_Mutation p.P273L 0.31 deleterious(0) benign(0.012) TCGA-95-7562-01 9 116811081 116811081 T C ZNF618 Missense_Mutation p.V407A 0.12 deleterious(0) probably_damaging(0.997) TCGA-95-7562-01 9 128206873 128206873 G A MAPKAP1 Silent p.H450H 0.28 TCGA-95-7562-01 9 131095905 131095905 A T COQ4 Missense_Mutation p.H260L 0.39 tolerated(0.66) benign(0.001) TCGA-95-7562-01 9 137709648 137709648 G T COL5A1 Nonsense_Mutation p.E1401* 0.43 TCGA-95-7562-01 9 138457261 138457261 G T PAEP Missense_Mutation p.V143F 0.38 deleterious(0) possibly_damaging(0.852) TCGA-95-7562-01 9 140325748 140325749 AG - NOXA1 Frame_Shift_Del p.E254Gfs*4 0.24 TCGA-95-7562-01 9 140972574 140972574 C T CACNA1B Missense_Mutation p.T1653M 0.20 deleterious(0) probably_damaging(1) TCGA-95-7562-01 9 14722272 14722272 G T CER1 Missense_Mutation p.F133L 0.51 deleterious(0.01) probably_damaging(0.999) TCGA-95-7562-01 9 34125082 34125084 TTA - DCAF12 In_Frame_Del p.N90del 0.13 TCGA-95-7562-01 9 34125105 34125106 CT - DCAF12 Frame_Shift_Del p.E83Vfs*7 0.09 TCGA-95-7562-01 9 35077020 35077020 C T FANCG Missense_Mutation p.R242Q 0.21 tolerated(0.12) benign(0.048) TCGA-95-7562-01 9 35733427 35733428 AG - CREB3 Frame_Shift_Del p.L129Ifs*10 0.11 TCGA-95-7562-01 9 36227307 36227307 G A GNE Silent p.L438L 0.18 TCGA-95-7562-01 9 36227330 36227330 T C GNE Missense_Mutation p.D430G 0.24 deleterious(0) probably_damaging(0.956) TCGA-95-7562-01 9 37719069 37719069 G T FRMPD1 Missense_Mutation p.V138F 0.31 tolerated(0.08) benign(0.379) TCGA-95-7562-01 9 84605879 84605879 C A SPATA31D1 Missense_Mutation p.A165E 0.29 deleterious(0.04) benign(0.021) TCGA-95-7562-01 X 101909023 101909023 G T GPRASP1 Missense_Mutation p.G61V 0.72 deleterious(0.02) benign(0.259) TCGA-95-7562-01 X 109764323 109764323 G T TDGF1P3 RNA 0.90 TCGA-95-7562-01 X 117960201 117960201 C T ZCCHC12 Missense_Mutation p.P332S 0.07 tolerated_low_confidence(0.12) benign(0.053) TCGA-95-7562-01 X 1321391 1321391 G T CRLF2 Missense_Mutation p.P122T 0.36 deleterious(0.04) probably_damaging(0.998) TCGA-95-7562-01 X 132161911 132161911 C A USP26 Missense_Mutation p.G113V 0.67 tolerated(0.52) benign(0.004) TCGA-95-7562-01 X 140996287 140996287 G T MAGEC1 Nonsense_Mutation p.E1033* 0.59 TCGA-95-7562-01 X 141291591 141291591 C G MAGEC2 Silent p.L61L 0.65 TCGA-95-7562-01 X 153881556 153881556 G T CTAG2 Nonsense_Mutation p.C78* 0.59 TCGA-95-7562-01 X 15841214 15841214 G T ZRSR2 Missense_Mutation p.R433L 0.53 tolerated_low_confidence(0.1) unknown(0) TCGA-95-7562-01 X 1585327 1585327 A T P2RY8 Missense_Mutation p.L42H 0.25 tolerated(0.33) probably_damaging(0.935) TCGA-95-7562-01 X 18189125 18189125 G C BEND2 Silent p.L727L 0.73 TCGA-95-7562-01 X 26157179 26157179 G T MAGEB18 Missense_Mutation p.G26V 0.72 tolerated(0.35) benign(0.01) TCGA-95-7562-01 X 29301214 29301214 G T IL1RAPL1 Missense_Mutation p.G81V 0.63 tolerated(0.13) benign(0.012) TCGA-95-7562-01 X 3242067 3242067 G T MXRA5 Nonsense_Mutation p.Y553* 0.58 TCGA-95-7562-01 X 39931884 39931884 C A BCOR Silent p.L905L 0.63 TCGA-95-7562-01 X 54956546 54956546 G T TRO Missense_Mutation p.G1130V 0.72 deleterious(0) probably_damaging(0.996) TCGA-95-7562-01 X 65835827 65835827 C A EDA2R Missense_Mutation p.W12C 0.81 tolerated(0.17) probably_damaging(0.986) TCGA-95-7562-01 X 65835828 65835828 C T EDA2R Nonsense_Mutation p.W12* 0.83 TCGA-95-7562-01 X 69890341 69890341 T A TEX11 Silent p.L437L 0.73 TCGA-95-7562-01 X 83360849 83360849 C A RPS6KA6 Missense_Mutation p.E467D 0.49 deleterious(0) probably_damaging(1) TCGA-95-7562-01 Y 3447477 3447477 C A TGIF2LY Silent p.I64I 0.35 TCGA-95-7567-01 10 102796833 102796833 A G SFXN3 Silent p.R202R 0.12 TCGA-95-7567-01 10 104378865 104378865 G A SUFU Intron 0.16 TCGA-95-7567-01 10 11367850 11367850 A G CELF2 Missense_Mutation p.D449G 0.14 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 10 11797413 11797413 A G ECHDC3 Missense_Mutation p.M133V 0.06 tolerated(0.3) benign(0.036) TCGA-95-7567-01 10 118084561 118084561 C A CCDC172 Missense_Mutation p.T13N 0.14 deleterious(0) benign(0.232) TCGA-95-7567-01 10 12131255 12131255 G T DHTKD1 Splice_Site p.X329_splice 0.21 TCGA-95-7567-01 10 121337189 121337189 T C TIAL1 Missense_Mutation p.T223A 0.18 deleterious(0) benign(0.414) TCGA-95-7567-01 10 12291634 12291635 - A CDC123 Nonsense_Mutation p.Y301* 0.13 TCGA-95-7567-01 10 125426343 125426343 C A GPR26 Silent p.A140A 0.23 TCGA-95-7567-01 10 125521574 125521574 G T CPXM2 Silent p.R531R 0.20 TCGA-95-7567-01 10 127436206 127436206 T C EDRF1 Silent p.F972F 0.09 TCGA-95-7567-01 10 1279656 1279656 G A ADARB2 Missense_Mutation p.P498L 0.23 deleterious(0) probably_damaging(0.983) TCGA-95-7567-01 10 134016185 134016185 C A DPYSL4 Nonsense_Mutation p.C439* 0.21 TCGA-95-7567-01 10 135205008 135205008 C T PAOX 3'UTR 0.14 TCGA-95-7567-01 10 14816530 14816530 C G FAM107B Missense_Mutation p.V45L 0.13 tolerated_low_confidence(0.08) benign(0.049) TCGA-95-7567-01 10 16635373 16635373 A G RSU1 3'UTR 0.10 TCGA-95-7567-01 10 16942786 16942786 T C CUBN Missense_Mutation p.R2750G 0.08 tolerated(0.33) benign(0.349) TCGA-95-7567-01 10 17110651 17110652 - A CUBN Frame_Shift_Ins p.S915Ffs*3 0.09 TCGA-95-7567-01 10 18331738 18331738 A T SLC39A12 Silent p.I684I 0.19 TCGA-95-7567-01 10 18439885 18439885 C G CACNB2 Nonsense_Mutation p.S65* 0.11 TCGA-95-7567-01 10 20432341 20432341 A G PLXDC2 Missense_Mutation p.D220G 0.15 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 10 21804201 21804202 - A SKIDA1 Frame_Shift_Ins p.P851Sfs*24 0.12 TCGA-95-7567-01 10 27536758 27536758 C T RP11-85G18.6 Intron 0.20 TCGA-95-7567-01 10 29815987 29815987 T C SVIL Splice_Site p.X749_splice 0.14 TCGA-95-7567-01 10 30918551 30918551 A G LYZL2 Silent p.S28S 0.16 TCGA-95-7567-01 10 37486217 37486217 G T ANKRD30A Nonsense_Mutation p.E819* 0.30 TCGA-95-7567-01 10 38406690 38406690 A T ZNF37A Missense_Mutation p.E204V 0.32 deleterious(0.05) possibly_damaging(0.725) TCGA-95-7567-01 10 402340 402340 C T DIP2C Intron 0.19 TCGA-95-7567-01 10 44052263 44052263 T C ZNF239 Missense_Mutation p.Q422R 0.11 deleterious(0.03) probably_damaging(0.985) TCGA-95-7567-01 10 46111911 46111911 A G ZFAND4 Silent p.V719V 0.07 TCGA-95-7567-01 10 55582643 55582643 A G PCDH15 Missense_Mutation p.C1617R 0.12 tolerated_low_confidence(0.36) benign(0.002) TCGA-95-7567-01 10 55582862 55582862 T C PCDH15 Missense_Mutation p.I1544V 0.18 tolerated_low_confidence(0.22) benign(0.011) TCGA-95-7567-01 10 55944970 55944970 G A PCDH15 Missense_Mutation p.T455I 0.22 deleterious(0) probably_damaging(0.936) TCGA-95-7567-01 10 64159496 64159496 T C ZNF365 Intron 0.10 TCGA-95-7567-01 10 64913381 64913381 C T NRBF2 Silent p.N89N 0.12 TCGA-95-7567-01 10 69751983 69751983 G A HERC4 Missense_Mutation p.S415F 0.25 tolerated(0.05) benign(0.132) TCGA-95-7567-01 10 69934191 69934191 A G MYPN Missense_Mutation p.Q781R 0.16 tolerated(0.21) benign(0.013) TCGA-95-7567-01 10 70672916 70672916 A G DDX50 Splice_Site p.X214_splice 0.10 TCGA-95-7567-01 10 73544143 73544143 C A CDH23 Missense_Mutation p.A1828D 0.10 deleterious(0) probably_damaging(0.958) TCGA-95-7567-01 10 75607836 75607836 G T CAMK2G Silent p.V202V 0.18 TCGA-95-7567-01 10 7608296 7608296 G A ITIH5 Missense_Mutation p.R742C 0.18 deleterious(0.04) possibly_damaging(0.84) TCGA-95-7567-01 10 7866286 7866286 C T TAF3 Nonsense_Mutation p.R58* 0.10 TCGA-95-7567-01 10 82098194 82098195 - T DYDC1 Intron 0.11 TCGA-95-7567-01 10 88439263 88439263 T A LDB3 Missense_Mutation p.L78H 0.34 deleterious(0) probably_damaging(1) TCGA-95-7567-01 10 91066380 91066380 C T IFIT2 Missense_Mutation p.R223C 0.13 deleterious(0.03) benign(0.001) TCGA-95-7567-01 10 95385369 95385369 T C PDE6C Missense_Mutation p.V301A 0.32 tolerated(0.83) benign(0.026) TCGA-95-7567-01 10 99426256 99426256 T A PI4K2A Missense_Mutation p.D352E 0.21 tolerated(0.37) benign(0.02) TCGA-95-7567-01 11 100221521 100221521 T A CNTN5 Missense_Mutation p.V1040D 0.11 tolerated(1) possibly_damaging(0.588) TCGA-95-7567-01 11 102822743 102822743 T C MMP13 Missense_Mutation p.Y266C 0.04 deleterious(0) probably_damaging(1) TCGA-95-7567-01 11 104815577 104815577 A G CASP4 Missense_Mutation p.V346A 0.25 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 11 104899951 104899951 A G CASP1 Silent p.S302S 0.25 TCGA-95-7567-01 11 10506451 10506452 - G AMPD3 Frame_Shift_Ins p.I237Hfs*6 0.19 TCGA-95-7567-01 11 105481700 105481700 C T GRIA4 5'UTR 0.19 TCGA-95-7567-01 11 108181041 108181041 A G ATM Missense_Mutation p.R1973G 0.08 deleterious(0.01) benign(0.101) TCGA-95-7567-01 11 108381280 108381280 C A EXPH5 Nonsense_Mutation p.E1652* 0.28 TCGA-95-7567-01 11 111386831 111386831 A T C11orf88 Missense_Mutation p.Q112L 0.07 deleterious(0) probably_damaging(0.931) TCGA-95-7567-01 11 111386832 111386832 A C C11orf88 Missense_Mutation p.Q112H 0.08 deleterious(0) probably_damaging(0.976) TCGA-95-7567-01 11 113078037 113078037 G T NCAM1 Missense_Mutation p.G287V 0.09 deleterious(0.02) possibly_damaging(0.558) TCGA-95-7567-01 11 11373918 11373918 C A CSNK2A3 Missense_Mutation p.G250V 0.23 deleterious(0) probably_damaging(0.99) TCGA-95-7567-01 11 11374301 11374301 C A CSNK2A3 Missense_Mutation p.K122N 0.17 deleterious(0) possibly_damaging(0.815) TCGA-95-7567-01 11 114401078 114401078 T C NXPE1 Missense_Mutation p.T76A 0.20 tolerated(0.38) benign(0.06) TCGA-95-7567-01 11 116692115 116692115 C A APOA4 Missense_Mutation p.R220L 0.14 deleterious(0) probably_damaging(0.991) TCGA-95-7567-01 11 116734527 116734527 A G SIK3 Missense_Mutation p.Y548H 0.21 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-95-7567-01 11 118037610 118037610 C T SCN2B Missense_Mutation p.A214T 0.15 tolerated_low_confidence(1) benign(0) TCGA-95-7567-01 11 118886423 118886423 T C CCDC84 3'UTR 0.18 TCGA-95-7567-01 11 118918710 118918710 T G HYOU1 Missense_Mutation p.E820A 0.21 deleterious(0.02) benign(0.06) TCGA-95-7567-01 11 119045255 119045255 A G NLRX1 Missense_Mutation p.T315A 0.05 tolerated(0.64) probably_damaging(0.998) TCGA-95-7567-01 11 119243829 119243829 C T USP2 Missense_Mutation p.C121Y 0.06 tolerated_low_confidence(0.11) benign(0.05) TCGA-95-7567-01 11 120176403 120176403 G T POU2F3 Missense_Mutation p.Q228H 0.19 deleterious(0) probably_damaging(0.998) TCGA-95-7567-01 11 120983858 120983858 G T TECTA Missense_Mutation p.W188C 0.23 deleterious(0) probably_damaging(0.997) TCGA-95-7567-01 11 122775152 122775152 G T C11orf63 Missense_Mutation p.Q288H 0.23 deleterious(0) probably_damaging(0.996) TCGA-95-7567-01 11 123908953 123908953 G A OR10G7 Silent p.G252G 0.20 TCGA-95-7567-01 11 124120445 124120445 C - OR8G1 Frame_Shift_Del p.S8* 0.20 TCGA-95-7567-01 11 124121181 124121181 A G OR8G1 Silent p.G253G 0.21 TCGA-95-7567-01 11 125280187 125280187 C T PKNOX2 Silent p.I228I 0.13 TCGA-95-7567-01 11 125525121 125525121 G A CHEK1 Missense_Mutation p.G446D 0.23 deleterious(0) probably_damaging(1) TCGA-95-7567-01 11 125769723 125769723 T A HYLS1 Missense_Mutation p.F154I 0.09 tolerated(0.41) benign(0.045) TCGA-95-7567-01 11 126126732 126126732 A G FAM118B Missense_Mutation p.T323A 0.27 tolerated(0.55) benign(0.001) TCGA-95-7567-01 11 1269131 1269131 C A MUC5B Missense_Mutation p.T3674N 0.17 unknown(0) TCGA-95-7567-01 11 133799598 133799598 A G IGSF9B Silent p.Y533Y 0.21 TCGA-95-7567-01 11 14280894 14280894 A T RP11-21L19.1 3'Flank 0.40 TCGA-95-7567-01 11 1464569 1464569 A G BRSK2 Missense_Mutation p.E236G 0.38 deleterious(0.01) benign(0.343) TCGA-95-7567-01 11 15212305 15212305 G A INSC Missense_Mutation p.G260E 0.13 tolerated(0.16) benign(0.179) TCGA-95-7567-01 11 16077358 16077358 C A SOX6 Silent p.T397T 0.22 TCGA-95-7567-01 11 16838711 16838711 C A PLEKHA7 Missense_Mutation p.R501L 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-95-7567-01 11 17430022 17430022 G T ABCC8 Missense_Mutation p.L913I 0.14 tolerated(0.08) possibly_damaging(0.58) TCGA-95-7567-01 11 17793334 17793334 G A KCNC1 Silent p.T231T 0.09 TCGA-95-7567-01 11 18159239 18159239 C A MRGPRX3 Missense_Mutation p.L164M 0.08 tolerated(0.06) possibly_damaging(0.809) TCGA-95-7567-01 11 22647210 22647210 A C FANCF Silent p.G49G 0.10 TCGA-95-7567-01 11 27077189 27077190 - A BBOX1 Frame_Shift_Ins p.V74Gfs*8 0.13 TCGA-95-7567-01 11 31086146 31086146 C A DCDC1 Missense_Mutation p.G821C 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-95-7567-01 11 40136488 40136488 G A LRRC4C Missense_Mutation p.S452F 0.32 deleterious(0.05) possibly_damaging(0.759) TCGA-95-7567-01 11 40137478 40137478 C A LRRC4C Missense_Mutation p.G122V 0.48 deleterious(0.03) probably_damaging(0.975) TCGA-95-7567-01 11 43419030 43419031 - AT TTC17 Frame_Shift_Ins p.A306Mfs*28 0.12 TCGA-95-7567-01 11 46407202 46407202 G T CHRM4 Silent p.T302T 0.06 TCGA-95-7567-01 11 46408003 46408003 A G CHRM4 Silent p.I35I 0.29 TCGA-95-7567-01 11 4673831 4673831 G T OR51E1 Missense_Mutation p.E25D 0.24 tolerated(0.65) benign(0.001) TCGA-95-7567-01 11 46911534 46911534 T C LRP4 Missense_Mutation p.M685V 0.08 deleterious(0) probably_damaging(0.954) TCGA-95-7567-01 11 46921473 46921473 C A LRP4 Missense_Mutation p.R124L 0.38 tolerated(0.19) benign(0.05) TCGA-95-7567-01 11 47681749 47681749 G T AGBL2 Silent p.S895S 0.11 TCGA-95-7567-01 11 4790450 4790450 G A OR51F1 Missense_Mutation p.P233L 0.27 tolerated(0.06) benign(0.098) TCGA-95-7567-01 11 48134531 48134532 CA - PTPRJ Frame_Shift_Del p.T117Wfs*7 0.09 TCGA-95-7567-01 11 4825052 4825052 C A OR52R1 Missense_Mutation p.V187L 0.32 tolerated(0.23) benign(0.181) TCGA-95-7567-01 11 4825054 4825054 G C OR52R1 Missense_Mutation p.A186G 0.31 tolerated(0.28) probably_damaging(0.999) TCGA-95-7567-01 11 51412112 51412112 C A OR4A5 Missense_Mutation p.C95F 0.23 deleterious_low_confidence(0) benign(0.216) TCGA-95-7567-01 11 51515322 51515322 G T OR4C46 Missense_Mutation p.G14V 0.31 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-95-7567-01 11 5364088 5364088 C T OR51B5 Missense_Mutation p.V223I 0.07 deleterious(0.04) possibly_damaging(0.764) TCGA-95-7567-01 11 55038144 55038144 G T TRIM48 3'UTR 0.35 TCGA-95-7567-01 11 55111262 55111262 A G OR4A16 Missense_Mutation p.T196A 0.05 tolerated_low_confidence(0.33) benign(0.06) TCGA-95-7567-01 11 55798786 55798786 A - OR5AS1 Frame_Shift_Del p.N299Mfs*7 0.13 TCGA-95-7567-01 11 55890409 55890409 G T OR8H3 Silent p.L187L 0.16 TCGA-95-7567-01 11 55890411 55890411 C T OR8H3 Missense_Mutation p.S188F 0.15 deleterious(0) probably_damaging(0.993) TCGA-95-7567-01 11 55904663 55904663 A G OR8J3 Missense_Mutation p.Y178H 0.18 deleterious(0) probably_damaging(0.981) TCGA-95-7567-01 11 55927589 55927589 C T OR8K5 Missense_Mutation p.V69I 0.15 tolerated_low_confidence(0.54) benign(0.002) TCGA-95-7567-01 11 57077972 57077972 G - TNKS1BP1 Frame_Shift_Del p.P738Hfs*87 0.19 TCGA-95-7567-01 11 5758380 5758380 G A OR56B1 Missense_Mutation p.A212T 0.28 tolerated(0.08) probably_damaging(0.954) TCGA-95-7567-01 11 57995971 57995971 C T OR10Q1 Missense_Mutation p.R126H 0.38 deleterious(0.01) possibly_damaging(0.902) TCGA-95-7567-01 11 58034412 58034412 C A OR10W1 3'UTR 0.19 TCGA-95-7567-01 11 58034413 58034413 C A OR10W1 Nonstop_Mutation p.*306Yext*? 0.18 TCGA-95-7567-01 11 58207488 58207488 A C OR5B12 Missense_Mutation p.L46W 0.28 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-95-7567-01 11 58391564 58391564 G T CNTF Missense_Mutation p.V58L 0.21 tolerated(0.45) benign(0.004) TCGA-95-7567-01 11 5841902 5841902 G T OR52N2 Nonsense_Mutation p.E113* 0.05 TCGA-95-7567-01 11 58477234 58477234 T G GLYAT 3'UTR 0.19 TCGA-95-7567-01 11 58979595 58979599 CACGG - MPEG1 Frame_Shift_Del p.T247Kfs*5 0.44 TCGA-95-7567-01 11 59282678 59282678 T C OR4D9 Missense_Mutation p.V98A 0.14 deleterious(0) benign(0.028) TCGA-95-7567-01 11 6048892 6048892 G T OR56A1 Missense_Mutation p.P15T 0.10 tolerated(0.18) benign(0.073) TCGA-95-7567-01 11 61097030 61097030 G A DDB1 Silent p.T118T 0.24 TCGA-95-7567-01 11 6129945 6129945 C A OR56B4 Missense_Mutation p.L313M 0.16 tolerated(0.08) possibly_damaging(0.86) TCGA-95-7567-01 11 62340201 62340201 T A EEF1G Missense_Mutation p.Y9F 0.19 tolerated(0.08) benign(0.33) TCGA-95-7567-01 11 63141428 63141428 G A SLC22A9 Missense_Mutation p.G242S 0.23 tolerated(1) benign(0.004) TCGA-95-7567-01 11 64026363 64026363 G A PLCB3 Silent p.K420K 0.13 TCGA-95-7567-01 11 64893273 64893273 A G MRPL49 Missense_Mutation p.T144A 0.17 tolerated(0.23) benign(0.057) TCGA-95-7567-01 11 65123341 65123341 T C TIGD3 Missense_Mutation p.L21P 0.21 deleterious(0) probably_damaging(1) TCGA-95-7567-01 11 65650585 65650585 T C CTSW Missense_Mutation p.I264T 0.14 deleterious(0) probably_damaging(0.997) TCGA-95-7567-01 11 65988100 65988100 A T PACS1 Splice_Site p.X347_splice 0.44 TCGA-95-7567-01 11 66311439 66311439 A G ZDHHC24 Missense_Mutation p.C99R 0.11 deleterious(0) probably_damaging(0.998) TCGA-95-7567-01 11 66411054 66411054 C T RBM14-RBM4 Silent p.R157R 0.19 TCGA-95-7567-01 11 67258406 67258406 G A AIP Missense_Mutation p.R312Q 0.30 tolerated(0.12) possibly_damaging(0.76) TCGA-95-7567-01 11 67815252 67815252 G A TCIRG1 Missense_Mutation p.A482T 0.14 tolerated(0.2) possibly_damaging(0.864) TCGA-95-7567-01 11 6867096 6867096 C G OR10A5 Nonsense_Mutation p.Y61* 0.20 TCGA-95-7567-01 11 7081289 7081289 A T NLRP14 Missense_Mutation p.D933V 0.17 tolerated(0.12) possibly_damaging(0.545) TCGA-95-7567-01 11 71719744 71719744 T C NUMA1 Missense_Mutation p.S1736G 0.45 benign(0.138) TCGA-95-7567-01 11 72466013 72466013 C T STARD10 Missense_Mutation p.A269T 0.25 tolerated(0.58) benign(0.001) TCGA-95-7567-01 11 73765676 73765676 C A C2CD3 Missense_Mutation p.V1711F 0.14 deleterious(0) possibly_damaging(0.9) TCGA-95-7567-01 11 73829363 73829364 - T C2CD3 Frame_Shift_Ins p.I477Nfs*12 0.15 TCGA-95-7567-01 11 74414386 74414387 - G CHRDL2 Frame_Shift_Ins p.E304Rfs*22 0.17 TCGA-95-7567-01 11 75439835 75439835 G T MOGAT2 Silent p.G217G 0.14 TCGA-95-7567-01 11 77961261 77961261 C T GAB2 Missense_Mutation p.A188T 0.19 tolerated(0.53) benign(0.087) TCGA-95-7567-01 11 8148266 8148266 T G RIC3 Missense_Mutation p.I204L 0.19 tolerated(0.52) benign(0.002) TCGA-95-7567-01 11 83195190 83195190 C G DLG2 Missense_Mutation p.E759Q 0.15 deleterious(0.02) probably_damaging(0.969) TCGA-95-7567-01 11 8496256 8496256 T A STK33 Missense_Mutation p.N66I 0.18 tolerated_low_confidence(0.14) benign(0.001) TCGA-95-7567-01 11 92085701 92085701 G T FAT3 Missense_Mutation p.W141C 0.22 probably_damaging(0.976) TCGA-95-7567-01 11 92881785 92881785 G A SLC36A4 Missense_Mutation p.P478L 0.13 deleterious(0) probably_damaging(0.987) TCGA-95-7567-01 11 93104408 93104408 C A CCDC67 Missense_Mutation p.L251I 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-95-7567-01 11 93454920 93454921 - G KIAA1731 Intron 0.34 TCGA-95-7567-01 11 93471430 93471430 T A TAF1D Missense_Mutation p.T102S 0.07 tolerated(0.18) benign(0.324) TCGA-95-7567-01 11 93796832 93796832 G A HEPHL1 Missense_Mutation p.A192T 0.06 tolerated(0.25) possibly_damaging(0.462) TCGA-95-7567-01 11 9445353 9445353 G A IPO7 Silent p.L357L 0.11 TCGA-95-7567-01 11 9445360 9445360 T C IPO7 Missense_Mutation p.Y360H 0.10 tolerated(0.29) benign(0.17) TCGA-95-7567-01 12 100453146 100453147 - A UHRF1BP1L Frame_Shift_Ins p.S637* 0.13 TCGA-95-7567-01 12 104397073 104397073 C T GLT8D2 Missense_Mutation p.E42K 0.23 tolerated(0.15) benign(0.003) TCGA-95-7567-01 12 10856658 10856658 C T YBX3 Silent p.R290R 0.24 TCGA-95-7567-01 12 109972579 109972579 C G UBE3B Missense_Mutation p.L1067V 0.15 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 12 110002929 110002929 G A MMAB Nonsense_Mutation p.Q115* 0.20 TCGA-95-7567-01 12 110236656 110236656 C T TRPV4 Silent p.T305T 0.39 TCGA-95-7567-01 12 11214514 11214514 C T TAS2R46 Missense_Mutation p.S127N 0.05 tolerated(0.25) benign(0.033) TCGA-95-7567-01 12 121154530 121154530 C T UNC119B Missense_Mutation p.T153I 0.21 deleterious(0.02) possibly_damaging(0.826) TCGA-95-7567-01 12 122359327 122359327 A G WDR66 Missense_Mutation p.E39G 0.08 tolerated_low_confidence(0.15) benign(0.008) TCGA-95-7567-01 12 123075220 123075220 G T KNTC1 Missense_Mutation p.D1356Y 0.25 deleterious(0.01) possibly_damaging(0.75) TCGA-95-7567-01 12 123087619 123087620 - A KNTC1 Frame_Shift_Ins p.L1647Tfs*12 0.23 TCGA-95-7567-01 12 12315178 12315178 A G LRP6 Missense_Mutation p.V743A 0.06 deleterious(0) possibly_damaging(0.884) TCGA-95-7567-01 12 124094491 124094491 A T DDX55 Missense_Mutation p.N186I 0.19 deleterious(0) probably_damaging(0.996) TCGA-95-7567-01 12 12483643 12483643 T G MANSC1 Missense_Mutation p.Q205P 0.08 tolerated(0.13) benign(0.013) TCGA-95-7567-01 12 125834534 125834534 G T TMEM132B Missense_Mutation p.G197C 0.29 deleterious(0.01) possibly_damaging(0.849) TCGA-95-7567-01 12 130647987 130647987 C T FZD10 Missense_Mutation p.P167L 0.22 deleterious(0.04) probably_damaging(0.998) TCGA-95-7567-01 12 13208754 13208754 C T KIAA1467 Missense_Mutation p.R103C 0.17 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 12 132466666 132466666 G A EP400 Silent p.A524A 0.07 TCGA-95-7567-01 12 132546759 132546759 G A EP400 Silent p.T2663T 0.21 TCGA-95-7567-01 12 14959395 14959395 T C SMCO3 Missense_Mutation p.M74V 0.05 tolerated(0.3) benign(0) TCGA-95-7567-01 12 16189224 16189224 C G DERA Missense_Mutation p.S270C 0.11 tolerated(0.1) benign(0.033) TCGA-95-7567-01 12 18691100 18691100 C A PIK3C2G Missense_Mutation p.P1071T 0.38 deleterious(0) probably_damaging(0.994) TCGA-95-7567-01 12 21715920 21715920 A T GYS2 Missense_Mutation p.Y332N 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-95-7567-01 12 21926504 21926504 C T KCNJ8 Missense_Mutation p.R16H 0.10 deleterious(0.05) benign(0.284) TCGA-95-7567-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.36 deleterious(0) possibly_damaging(0.479) TCGA-95-7567-01 12 27181251 27181251 C A MED21 Missense_Mutation p.H98N 0.05 tolerated(0.13) benign(0.182) TCGA-95-7567-01 12 29689180 29689180 C A TMTC1 Missense_Mutation p.D583Y 0.10 deleterious(0) probably_damaging(0.986) TCGA-95-7567-01 12 29709802 29709802 C T TMTC1 Missense_Mutation p.G555E 0.15 deleterious(0) probably_damaging(0.998) TCGA-95-7567-01 12 29709899 29709899 G A TMTC1 Missense_Mutation p.L523F 0.05 deleterious(0) probably_damaging(0.99) TCGA-95-7567-01 12 39695300 39695300 T A KIF21A Missense_Mutation p.H1638L 0.17 tolerated(0.13) benign(0.031) TCGA-95-7567-01 12 45001014 45001014 G A NELL2 Missense_Mutation p.A584V 0.25 tolerated(0.18) benign(0.002) TCGA-95-7567-01 12 46315840 46315841 - T SCAF11 Frame_Shift_Ins p.N1461Kfs*28 0.16 TCGA-95-7567-01 12 47471225 47471225 A G AMIGO2 Missense_Mutation p.S521P 0.19 tolerated(0.1) benign(0) TCGA-95-7567-01 12 47471601 47471601 T C AMIGO2 Silent p.A395A 0.17 TCGA-95-7567-01 12 47629134 47629134 C G PCED1B Silent p.R96R 0.09 TCGA-95-7567-01 12 47629138 47629138 T A PCED1B Missense_Mutation p.Y98N 0.08 deleterious(0) probably_damaging(1) TCGA-95-7567-01 12 48367950 48367950 G T COL2A1 Silent p.I1413I 0.08 TCGA-95-7567-01 12 48723269 48723269 C T H1FNT Silent p.L65L 0.19 TCGA-95-7567-01 12 4920250 4920250 G A KCNA6 Missense_Mutation p.R348Q 0.25 deleterious(0) probably_damaging(0.997) TCGA-95-7567-01 12 49364124 49364124 T G WNT10B Missense_Mutation p.N29H 0.11 tolerated(0.05) probably_damaging(0.987) TCGA-95-7567-01 12 50386086 50386086 T C RACGAP1 Missense_Mutation p.H507R 0.16 deleterious(0) probably_damaging(1) TCGA-95-7567-01 12 50390984 50390984 T A RACGAP1 Missense_Mutation p.I295F 0.13 deleterious(0) probably_damaging(0.996) TCGA-95-7567-01 12 51281099 51281099 G T TMPRSS12 Missense_Mutation p.V284L 0.12 tolerated(0.89) benign(0.005) TCGA-95-7567-01 12 5154172 5154172 G A KCNA5 Missense_Mutation p.A287T 0.13 tolerated(0.44) benign(0.033) TCGA-95-7567-01 12 56078909 56078909 G T ITGA7 Missense_Mutation p.P1120H 0.24 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-95-7567-01 12 56347958 56347958 C G PMEL 3'UTR 0.11 TCGA-95-7567-01 12 56492201 56492201 A T ERBB3 Intron 0.27 TCGA-95-7567-01 12 56607845 56607845 A G RNF41 5'UTR 0.04 TCGA-95-7567-01 12 57598893 57598894 - C LRP1 Frame_Shift_Ins p.T3735Hfs*32 0.15 TCGA-95-7567-01 12 57599438 57599438 G A LRP1 Silent p.T3856T 0.13 TCGA-95-7567-01 12 5853387 5853387 C A ANO2 Silent p.A425A 0.12 TCGA-95-7567-01 12 6145658 6145658 C A VWF Splice_Site p.X815_splice 0.19 TCGA-95-7567-01 12 63963125 63963125 G T DPY19L2 Silent p.R669R 0.20 TCGA-95-7567-01 12 64588065 64588066 - A C12orf66 Frame_Shift_Ins p.G299Wfs*11 0.14 TCGA-95-7567-01 12 70724089 70724089 A G CNOT2 Missense_Mutation p.R137G 0.15 deleterious(0) probably_damaging(0.994) TCGA-95-7567-01 12 70989879 70989879 G T PTPRB Missense_Mutation p.A403D 0.31 deleterious(0) possibly_damaging(0.885) TCGA-95-7567-01 12 7585029 7585029 A G CD163L1 Missense_Mutation p.V250A 0.16 tolerated(1) benign(0.004) TCGA-95-7567-01 12 77417769 77417769 C T E2F7 3'UTR 0.17 TCGA-95-7567-01 12 8048258 8048258 A T NANOGP1 RNA 0.24 TCGA-95-7567-01 12 81762565 81762565 G T PPFIA2 Missense_Mutation p.T474N 0.15 deleterious(0) benign(0.008) TCGA-95-7567-01 12 83358848 83358848 T A TMTC2 Missense_Mutation p.H548Q 0.15 tolerated(0.51) benign(0.038) TCGA-95-7567-01 12 85446027 85446027 G T LRRIQ1 Nonsense_Mutation p.E251* 0.14 TCGA-95-7567-01 12 91347651 91347651 T G CCER1 Missense_Mutation p.Y290S 0.19 tolerated(0.63) possibly_damaging(0.607) TCGA-95-7567-01 12 97084914 97084914 T C C12orf55 Silent p.L2030L 0.20 TCGA-95-7567-01 13 101795488 101795488 G A NALCN Silent p.S687S 0.27 TCGA-95-7567-01 13 101795498 101795498 G A NALCN Missense_Mutation p.T684I 0.19 tolerated(0.2) benign(0.002) TCGA-95-7567-01 13 103338753 103338753 A T METTL21C Missense_Mutation p.D141E 0.27 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 13 103515012 103515012 A C BIVM-ERCC5 Missense_Mutation p.S931R 0.14 tolerated_low_confidence(0.14) benign(0.027) TCGA-95-7567-01 13 110826813 110826813 G T COL4A1 Missense_Mutation p.P1129H 0.11 probably_damaging(0.997) TCGA-95-7567-01 13 113181737 113181737 A G TUBGCP3 Missense_Mutation p.L466S 0.05 deleterious(0.02) possibly_damaging(0.903) TCGA-95-7567-01 13 113530213 113530213 C T ATP11A Silent p.V1095V 0.27 TCGA-95-7567-01 13 21548889 21548889 A G LATS2 3'UTR 0.36 TCGA-95-7567-01 13 25671457 25671457 G A PABPC3 Missense_Mutation p.R374H 0.05 deleterious(0.01) possibly_damaging(0.781) TCGA-95-7567-01 13 32976974 32976974 C T N4BP2L1 3'UTR 0.25 TCGA-95-7567-01 13 32981855 32981856 - A N4BP2L1 Frame_Shift_Ins p.F79Lfs*8 0.08 TCGA-95-7567-01 13 33316786 33316786 A G PDS5B Missense_Mutation p.K845E 0.12 tolerated(0.42) benign(0.088) TCGA-95-7567-01 13 38237797 38237797 C A TRPC4 Missense_Mutation p.A482S 0.18 tolerated(0.13) benign(0.29) TCGA-95-7567-01 13 41814395 41814395 A G MTRF1 Splice_Site p.X290_splice 0.24 TCGA-95-7567-01 13 42874407 42874407 A T AKAP11 Missense_Mutation p.T509S 0.22 tolerated(0.75) benign(0.02) TCGA-95-7567-01 13 49823042 49823042 A G CDADC1 Missense_Mutation p.T40A 0.24 deleterious(0.01) probably_damaging(0.97) TCGA-95-7567-01 13 52511720 52511720 C A ATP7B Silent p.V1265V 0.15 TCGA-95-7567-01 13 58240827 58240827 G T PCDH17 Missense_Mutation p.S886I 0.19 deleterious(0) probably_damaging(0.98) TCGA-95-7567-01 13 70681664 70681664 C A KLHL1 Silent p.L56L 0.24 TCGA-95-7567-01 13 77754433 77754433 C A MYCBP2 Silent p.G1616G 0.16 TCGA-95-7567-01 13 77847731 77847731 A G MYCBP2 Missense_Mutation p.L236S 0.29 benign(0.131) TCGA-95-7567-01 13 84453836 84453836 C A SLITRK1 Missense_Mutation p.G603W 0.20 deleterious(0.02) possibly_damaging(0.712) TCGA-95-7567-01 13 84454373 84454373 C T SLITRK1 Missense_Mutation p.D424N 0.24 tolerated(1) benign(0) TCGA-95-7567-01 13 86368858 86368858 T C SLITRK6 Missense_Mutation p.T596A 0.20 tolerated(0.77) benign(0.018) TCGA-95-7567-01 13 94482464 94482464 G A GPC6 Missense_Mutation p.R126Q 0.24 tolerated(0.2) benign(0.135) TCGA-95-7567-01 13 95121241 95121241 G A DCT Silent p.C118C 0.16 TCGA-95-7567-01 13 98641412 98641412 T A IPO5 Missense_Mutation p.I172N 0.31 deleterious(0) probably_damaging(0.967) TCGA-95-7567-01 13 99368211 99368211 A G SLC15A1 Missense_Mutation p.V215A 0.32 deleterious(0) possibly_damaging(0.612) TCGA-95-7567-01 14 101531997 101531997 T C MIR369 RNA 0.21 TCGA-95-7567-01 14 103416123 103416123 G A CDC42BPB Missense_Mutation p.A1143V 0.08 tolerated(1) possibly_damaging(0.842) TCGA-95-7567-01 14 104508420 104508420 G T TDRD9 Missense_Mutation p.R1290S 0.38 deleterious(0) probably_damaging(0.988) TCGA-95-7567-01 14 107078555 107078555 G A IGHV1-58 Nonsense_Mutation p.R57* 0.30 TCGA-95-7567-01 14 107178989 107178989 C A IGHV2-70 Missense_Mutation p.G63V 0.22 deleterious(0.01) probably_damaging(0.957) TCGA-95-7567-01 14 19988264 19988264 A G POTEM 3'UTR 0.25 TCGA-95-7567-01 14 20248712 20248712 A T OR4M1 Silent p.T77T 0.15 TCGA-95-7567-01 14 20444032 20444032 G C OR4K15 Missense_Mutation p.D119H 0.25 deleterious(0.04) benign(0.227) TCGA-95-7567-01 14 22675994 22675994 C A TRAV34 Missense_Mutation p.S102R 0.20 tolerated(0.21) benign(0.043) TCGA-95-7567-01 14 24652867 24652867 G T IPO4 Missense_Mutation p.S664R 0.08 deleterious(0) probably_damaging(0.938) TCGA-95-7567-01 14 24807128 24807128 T C RIPK3 Silent p.L261L 0.07 TCGA-95-7567-01 14 28734217 28734218 - G BNIP3P1 RNA 0.09 TCGA-95-7567-01 14 31077152 31077152 C T G2E3 Silent p.H459H 0.15 TCGA-95-7567-01 14 31597942 31597942 C T HECTD1 Silent p.L1545L 0.19 TCGA-95-7567-01 14 31778294 31778294 A T AL136418.1 5'Flank 0.20 TCGA-95-7567-01 14 33015751 33015751 T C AKAP6 Missense_Mutation p.L631P 0.08 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 14 35871225 35871225 C G NFKBIA Silent p.T316T 0.05 TCGA-95-7567-01 14 42356095 42356095 T C LRFN5 Silent p.F89F 0.18 TCGA-95-7567-01 14 47504297 47504297 G T MDGA2 Nonsense_Mutation p.S579* 0.20 TCGA-95-7567-01 14 50100073 50100073 C T DNAAF2 Missense_Mutation p.A599T 0.22 tolerated(0.34) benign(0.111) TCGA-95-7567-01 14 50666524 50666524 G A SOS2 Missense_Mutation p.A132V 0.08 deleterious(0.03) probably_damaging(1) TCGA-95-7567-01 14 52734510 52734510 C A PTGDR 5'UTR 0.20 TCGA-95-7567-01 14 52741620 52741620 A G PTGDR Missense_Mutation p.I340V 0.12 tolerated(0.48) benign(0.001) TCGA-95-7567-01 14 52957649 52957649 A T TXNDC16 Silent p.V277V 0.09 TCGA-95-7567-01 14 52957674 52957674 A G TXNDC16 Missense_Mutation p.L269P 0.12 deleterious(0) probably_damaging(0.993) TCGA-95-7567-01 14 58965577 58965577 T C KIAA0586 Missense_Mutation p.M1409T 0.36 tolerated(0.31) benign(0.027) TCGA-95-7567-01 14 59967908 59967908 G A JKAMP Splice_Site p.X214_splice 0.11 TCGA-95-7567-01 14 62014573 62014573 G A RP11-47I22.4 Missense_Mutation p.R130H 0.20 deleterious(0) possibly_damaging(0.821) TCGA-95-7567-01 14 64580082 64580082 T G SYNE2 Silent p.A4211A 0.09 TCGA-95-7567-01 14 64957119 64957119 A G ZBTB25 Missense_Mutation p.F45L 0.16 deleterious(0) probably_damaging(0.998) TCGA-95-7567-01 14 71575562 71575562 C T PCNX Silent p.S2181S 0.11 TCGA-95-7567-01 14 72054904 72054904 C G SIPA1L1 Missense_Mutation p.C105W 0.16 tolerated(0.18) possibly_damaging(0.624) TCGA-95-7567-01 14 74824469 74824469 G A VRTN Missense_Mutation p.G328D 0.22 tolerated(0.14) possibly_damaging(0.894) TCGA-95-7567-01 14 89220988 89220988 C T EML5 Silent p.L75L 0.24 TCGA-95-7567-01 14 90769341 90769341 C A NRDE2 Missense_Mutation p.Q378H 0.09 deleterious(0.03) benign(0.035) TCGA-95-7567-01 14 94060041 94060041 C A UNC79 Silent p.V839V 0.08 TCGA-95-7567-01 14 94942518 94942518 A T SERPINA9 5'UTR 0.21 TCGA-95-7567-01 14 95572020 95572020 T C DICER1 Missense_Mutation p.K1030E 0.28 deleterious(0) probably_damaging(0.99) TCGA-95-7567-01 15 101606267 101606267 C T LRRK1 Silent p.C1875C 0.14 TCGA-95-7567-01 15 22369029 22369029 G T OR4M2 Missense_Mutation p.G152C 0.04 deleterious(0) probably_damaging(1) TCGA-95-7567-01 15 22382941 22382941 A G OR4N4 Missense_Mutation p.I157V 0.07 tolerated(0.22) benign(0.116) TCGA-95-7567-01 15 23931868 23931868 G A NDN Missense_Mutation p.A166V 0.17 tolerated(0.23) possibly_damaging(0.654) TCGA-95-7567-01 15 25468286 25468286 G T SNORD115-27 3'Flank 0.56 TCGA-95-7567-01 15 31197648 31197648 C T FAN1 Missense_Mutation p.A261V 0.22 tolerated(0.22) possibly_damaging(0.755) TCGA-95-7567-01 15 33873837 33873837 A T RYR3 Missense_Mutation p.K522N 0.08 benign(0.049) TCGA-95-7567-01 15 38614463 38614463 A - SPRED1 Frame_Shift_Del p.D79Tfs*42 0.11 TCGA-95-7567-01 15 40093574 40093574 G A GPR176 Missense_Mutation p.P436L 0.26 tolerated_low_confidence(0.06) benign(0.021) TCGA-95-7567-01 15 40284431 40284431 G A EIF2AK4 Splice_Site p.X896_splice 0.26 TCGA-95-7567-01 15 42807447 42807447 G A SNAP23 Missense_Mutation p.R54H 0.07 deleterious(0.04) benign(0.097) TCGA-95-7567-01 15 43378291 43378291 A T UBR1 Missense_Mutation p.Y77N 0.31 deleterious(0.01) benign(0.282) TCGA-95-7567-01 15 43814596 43814596 A G MAP1A Missense_Mutation p.K309E 0.23 probably_damaging(0.993) TCGA-95-7567-01 15 45412380 45412380 G T DUOXA1 Silent p.T231T 0.08 TCGA-95-7567-01 15 48755289 48755289 G A FBN1 Silent p.I1738I 0.25 TCGA-95-7567-01 15 59499746 59499746 C T LDHAL6B Missense_Mutation p.P203S 0.33 deleterious(0.05) benign(0.262) TCGA-95-7567-01 15 64792230 64792230 G A ZNF609 Silent p.V204V 0.17 TCGA-95-7567-01 15 71952986 71952986 A G THSD4 Missense_Mutation p.S424G 0.08 tolerated(0.1) benign(0.216) TCGA-95-7567-01 15 72553991 72553991 C A PARP6 Missense_Mutation p.K151N 0.17 tolerated(0.32) benign(0.001) TCGA-95-7567-01 15 72873113 72873113 T C ARIH1 Silent p.N419N 0.39 TCGA-95-7567-01 15 73048687 73048687 T C ADPGK Missense_Mutation p.S249G 0.27 deleterious(0.01) possibly_damaging(0.775) TCGA-95-7567-01 15 74919983 74919983 A G CLK3 Missense_Mutation p.H487R 0.15 deleterious(0) probably_damaging(0.99) TCGA-95-7567-01 15 90319996 90319996 G A MESP2 Silent p.S136S 0.45 TCGA-95-7567-01 15 91035793 91035793 G T IQGAP1 Missense_Mutation p.R1493L 0.36 deleterious(0) probably_damaging(0.969) TCGA-95-7567-01 15 91038012 91038012 G A IQGAP1 Missense_Mutation p.A1566T 0.18 tolerated(0.06) benign(0.329) TCGA-95-7567-01 15 91505112 91505112 C G RCCD1 3'UTR 0.25 TCGA-95-7567-01 16 16215926 16215926 T C ABCC1 Missense_Mutation p.V1162A 0.26 tolerated(0.93) possibly_damaging(0.507) TCGA-95-7567-01 16 17353197 17353197 A G XYLT1 Silent p.S187S 0.27 TCGA-95-7567-01 16 20386170 20386170 G C PDILT Missense_Mutation p.L219V 0.27 tolerated(0.1) probably_damaging(0.936) TCGA-95-7567-01 16 20442632 20442632 A G ACSM5 Missense_Mutation p.N433D 0.12 tolerated(0.07) benign(0.102) TCGA-95-7567-01 16 22277709 22277709 A C EEF2K Splice_Site p.X481_splice 0.05 TCGA-95-7567-01 16 23096295 23096295 A G USP31 Silent p.T572T 0.20 TCGA-95-7567-01 16 23693478 23693478 G T PLK1 Missense_Mutation p.K272N 0.26 tolerated(0.38) benign(0.005) TCGA-95-7567-01 16 23693479 23693479 G T PLK1 Splice_Site p.X272_splice 0.25 TCGA-95-7567-01 16 3025598 3025598 A G PKMYT1 Silent p.C198C 0.45 TCGA-95-7567-01 16 30569377 30569377 A G ZNF764 Silent p.L43L 0.30 TCGA-95-7567-01 16 30976134 30976134 T C SETD1A Silent p.S357S 0.25 TCGA-95-7567-01 16 31213972 31213972 T C PYCARD Missense_Mutation p.N14D 0.27 tolerated(0.39) benign(0.066) TCGA-95-7567-01 16 31426269 31426269 G A ITGAD Missense_Mutation p.R747H 0.12 tolerated(0.06) benign(0.064) TCGA-95-7567-01 16 332515 332515 C A ARHGDIG Missense_Mutation p.R155S 0.19 deleterious(0.02) probably_damaging(0.979) TCGA-95-7567-01 16 3363159 3363159 G A ZNF75A Silent p.E28E 0.18 TCGA-95-7567-01 16 347134 347134 G A AXIN1 Missense_Mutation p.A626V 0.18 tolerated(0.37) benign(0.001) TCGA-95-7567-01 16 3777990 3777990 C A CREBBP Missense_Mutation p.R2353L 0.26 unknown(0) TCGA-95-7567-01 16 4941903 4941903 T C PPL Missense_Mutation p.E626G 0.07 tolerated(0.07) benign(0.131) TCGA-95-7567-01 16 52484375 52484375 C T TOX3 Silent p.A164A 0.26 TCGA-95-7567-01 16 55532222 55532222 C A MMP2 Nonsense_Mutation p.S544* 0.16 TCGA-95-7567-01 16 55690629 55690629 C T SLC6A2 Missense_Mutation p.P8L 0.22 tolerated_low_confidence(0.25) benign(0.008) TCGA-95-7567-01 16 56623879 56623880 - C MT3 Intron 0.29 TCGA-95-7567-01 16 65022183 65022183 A G CDH11 Silent p.A292A 0.19 TCGA-95-7567-01 16 68846036 68846037 AG - CDH1 Splice_Site p.X337_splice 0.18 TCGA-95-7567-01 16 71772945 71772945 C A AP1G1 Missense_Mutation p.R726L 0.21 deleterious(0.02) possibly_damaging(0.512) TCGA-95-7567-01 16 71807199 71807199 G A AP1G1 Silent p.S131S 0.19 TCGA-95-7567-01 16 72993377 72993377 C A ZFHX3 Missense_Mutation p.G223V 0.35 probably_damaging(0.994) TCGA-95-7567-01 16 74446736 74446736 C A CLEC18B Missense_Mutation p.G240V 0.08 deleterious(0) probably_damaging(0.959) TCGA-95-7567-01 16 77229460 77229460 G A MON1B Missense_Mutation p.E442K 0.31 tolerated(0.12) benign(0.07) TCGA-95-7567-01 16 84213680 84213680 G A TAF1C Missense_Mutation p.A524V 0.56 tolerated(0.19) benign(0.014) TCGA-95-7567-01 16 84695241 84695241 C G KLHL36 Silent p.G451G 0.10 TCGA-95-7567-01 16 89345689 89345689 C T ANKRD11 Missense_Mutation p.A2421T 0.23 probably_damaging(0.977) TCGA-95-7567-01 16 89598357 89598357 G A SPG7 Missense_Mutation p.A345T 0.21 deleterious(0) probably_damaging(0.974) TCGA-95-7567-01 16 89614444 89614444 C T SPG7 Missense_Mutation p.A529V 0.20 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 16 89661895 89661895 G A CPNE7 Missense_Mutation p.A550T 0.26 deleterious(0.03) possibly_damaging(0.545) TCGA-95-7567-01 17 10318842 10318842 C A MYH8 Missense_Mutation p.A199S 0.35 deleterious(0) probably_damaging(0.945) TCGA-95-7567-01 17 15212074 15212074 T A TEKT3 Missense_Mutation p.D388V 0.51 deleterious(0.04) possibly_damaging(0.888) TCGA-95-7567-01 17 15532258 15532258 G A TRIM16 Missense_Mutation p.R456C 0.29 tolerated(0.08) benign(0.135) TCGA-95-7567-01 17 21731576 21731576 G T UBBP4 Silent p.S217S 0.26 TCGA-95-7567-01 17 2601632 2601632 T C CLUH Missense_Mutation p.T469A 0.45 deleterious(0) probably_damaging(0.991) TCGA-95-7567-01 17 27849414 27849414 T C TAOK1 Silent p.C675C 0.14 TCGA-95-7567-01 17 2908736 2908736 T C RAP1GAP2 Splice_Site p.X424_splice 0.06 TCGA-95-7567-01 17 3100858 3100858 G T OR1A2 Nonsense_Mutation p.G16* 0.32 TCGA-95-7567-01 17 33772338 33772338 C T SLFN13 Missense_Mutation p.G121D 0.41 tolerated(0.67) benign(0.002) TCGA-95-7567-01 17 35928998 35928998 T C SYNRG Missense_Mutation p.Q459R 0.19 deleterious(0) possibly_damaging(0.652) TCGA-95-7567-01 17 36495347 36495347 G T GPR179 Missense_Mutation p.P286T 0.44 deleterious(0) probably_damaging(0.96) TCGA-95-7567-01 17 37074986 37074986 C T LASP1 Silent p.T247T 0.15 TCGA-95-7567-01 17 37826287 37826287 T C PNMT Missense_Mutation p.L165P 0.09 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 17 39596688 39596688 T A KRT38 Missense_Mutation p.Q162H 0.15 deleterious(0.01) probably_damaging(1) TCGA-95-7567-01 17 39776803 39776803 G T KRT17 Missense_Mutation p.Q397K 0.09 tolerated(0.77) benign(0.01) TCGA-95-7567-01 17 39884470 39884470 G T HAP1 Missense_Mutation p.Q395K 0.13 deleterious(0.03) benign(0.092) TCGA-95-7567-01 17 42807349 42807349 G T DBF4B Missense_Mutation p.G101V 0.10 tolerated(0.1) benign(0.034) TCGA-95-7567-01 17 43044870 43044870 G A C1QL1 Missense_Mutation p.R183C 0.12 deleterious(0) probably_damaging(0.995) TCGA-95-7567-01 17 43343939 43343939 C A SPATA32 5'Flank 0.13 TCGA-95-7567-01 17 43907906 43907906 C A CRHR1 Missense_Mutation p.R256S 0.07 tolerated(0.09) benign(0.077) TCGA-95-7567-01 17 53798376 53798376 G T TMEM100 Missense_Mutation p.A19E 0.07 tolerated(0.72) benign(0.002) TCGA-95-7567-01 17 56536135 56536135 A G HSF5 Missense_Mutation p.S572P 0.14 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-95-7567-01 17 57721770 57721770 G A CLTC Missense_Mutation p.S59N 0.13 tolerated(1) benign(0.002) TCGA-95-7567-01 17 57725762 57725762 G T CLTC Missense_Mutation p.K227N 0.15 tolerated(0.06) probably_damaging(1) TCGA-95-7567-01 17 58343443 58343443 T A USP32 Missense_Mutation p.K274M 0.18 deleterious(0) possibly_damaging(0.521) TCGA-95-7567-01 17 59560342 59560342 G A TBX4 Missense_Mutation p.R368H 0.41 deleterious(0.02) probably_damaging(0.996) TCGA-95-7567-01 17 5984019 5984019 G A WSCD1 Missense_Mutation p.R14Q 0.24 deleterious(0.02) benign(0.357) TCGA-95-7567-01 17 60802296 60802296 T C MARCH10 Intron 0.13 TCGA-95-7567-01 17 61492920 61492920 A G TANC2 Missense_Mutation p.Y1267C 0.21 deleterious(0) probably_damaging(0.99) TCGA-95-7567-01 17 61901457 61901457 C A FTSJ3 Missense_Mutation p.A381S 0.04 tolerated(0.15) possibly_damaging(0.896) TCGA-95-7567-01 17 61995822 61995822 G A GH1 Missense_Mutation p.P19S 0.22 tolerated(0.14) benign(0.314) TCGA-95-7567-01 17 62574681 62574681 C T SMURF2 Silent p.T262T 0.23 TCGA-95-7567-01 17 63221362 63221362 G A RGS9 Silent p.G550G 0.19 TCGA-95-7567-01 17 641168 641168 T A FAM57A Missense_Mutation p.C97S 0.32 deleterious(0.02) benign(0.109) TCGA-95-7567-01 17 65871755 65871755 A G BPTF Intron 0.23 TCGA-95-7567-01 17 66267675 66267675 G A SLC16A6 Missense_Mutation p.A209V 0.09 tolerated(0.2) benign(0) TCGA-95-7567-01 17 67082829 67082829 C A ABCA6 Missense_Mutation p.Q1289H 0.10 deleterious(0.01) benign(0.027) TCGA-95-7567-01 17 68171776 68171776 C T KCNJ2 Missense_Mutation p.A199V 0.09 deleterious(0) probably_damaging(1) TCGA-95-7567-01 17 71282358 71282358 C A CDC42EP4 Missense_Mutation p.R94S 0.21 deleterious(0) probably_damaging(0.996) TCGA-95-7567-01 17 72588262 72588262 C T C17orf77 Missense_Mutation p.P26L 0.14 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-95-7567-01 17 72588589 72588589 A T C17orf77 Missense_Mutation p.E135V 0.19 tolerated_low_confidence(0.12) possibly_damaging(0.607) TCGA-95-7567-01 17 73228076 73228076 T C NUP85 Splice_Site p.X466_splice 0.12 TCGA-95-7567-01 17 73657775 73657775 C T RECQL5 Missense_Mutation p.G262D 0.06 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 17 73887174 73887174 C A TRIM65 Missense_Mutation p.D414Y 0.09 tolerated(0.07) probably_damaging(0.998) TCGA-95-7567-01 17 74003980 74003980 C T EVPL Missense_Mutation p.G1769D 0.11 deleterious(0.03) probably_damaging(1) TCGA-95-7567-01 17 74068450 74068451 - T SRP68 Frame_Shift_Ins p.N41Kfs*17 0.18 TCGA-95-7567-01 17 7496106 7496106 G C FXR2 Silent p.R545R 0.14 TCGA-95-7567-01 17 7578236 7578236 A G TP53 Missense_Mutation p.Y205H 0.48 deleterious(0.01) benign(0.387) TCGA-95-7567-01 17 7606341 7606341 G T WRAP53 Silent p.T433T 0.24 TCGA-95-7567-01 17 78923270 78923271 - T RPTOR Frame_Shift_Ins p.A1100Cfs*2 0.14 TCGA-95-7567-01 17 79612332 79612332 C T TSPAN10 Silent p.P117P 0.24 TCGA-95-7567-01 18 21106650 21106650 A G C18orf8 Silent p.L370L 0.11 TCGA-95-7567-01 18 21736785 21736785 T C CABYR Intron 0.09 TCGA-95-7567-01 18 22057564 22057564 C A HRH4 3'UTR 0.08 TCGA-95-7567-01 18 2718223 2718224 - A SMCHD1 Frame_Shift_Ins p.M779Nfs*20 0.21 TCGA-95-7567-01 18 29340530 29340530 T A SLC25A52 Missense_Mutation p.K42M 0.35 deleterious(0) possibly_damaging(0.819) TCGA-95-7567-01 18 31319230 31319230 C G ASXL3 Missense_Mutation p.A621G 0.54 benign(0.001) TCGA-95-7567-01 18 33610849 33610849 C T RPRD1A Silent p.R136R 0.05 TCGA-95-7567-01 18 33736468 33736468 T C ELP2 Missense_Mutation p.Y504H 0.84 deleterious(0) probably_damaging(0.986) TCGA-95-7567-01 18 3451899 3451899 G T TGIF1 5'UTR 0.11 TCGA-95-7567-01 18 45372173 45372173 T A SMAD2 Splice_Site p.X333_splice 0.47 TCGA-95-7567-01 18 48604668 48604668 G A SMAD4 Missense_Mutation p.R497H 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-95-7567-01 18 55342077 55342077 A G ATP8B1 Missense_Mutation p.M603T 0.07 deleterious(0) probably_damaging(0.998) TCGA-95-7567-01 18 61602088 61602088 C A SERPINB10 Missense_Mutation p.T269N 0.30 tolerated(0.06) probably_damaging(1) TCGA-95-7567-01 18 67344982 67344982 A G DOK6 Missense_Mutation p.E101G 0.12 tolerated(0.06) benign(0.02) TCGA-95-7567-01 19 10225288 10225288 A G PPAN-P2RY11 Silent p.R753R 0.37 TCGA-95-7567-01 19 10506666 10506666 G A CDC37 Missense_Mutation p.R106C 0.25 deleterious(0.01) possibly_damaging(0.79) TCGA-95-7567-01 19 11473281 11473281 C T DKFZP761J1410 Silent p.G227G 0.15 TCGA-95-7567-01 19 12256520 12256520 A G ZNF625 Silent p.H237H 0.19 TCGA-95-7567-01 19 12256740 12256740 T A ZNF625 Missense_Mutation p.D164V 0.23 tolerated(0.15) benign(0.001) TCGA-95-7567-01 19 14492311 14492311 G T CD97 5'UTR 0.54 TCGA-95-7567-01 19 15465643 15465643 G A AKAP8 3'UTR 0.29 TCGA-95-7567-01 19 15769082 15769082 T C CYP4F3 Missense_Mutation p.L375P 0.20 deleterious(0) probably_damaging(0.995) TCGA-95-7567-01 19 16612359 16612359 T G C19orf44 Missense_Mutation p.F252L 0.39 tolerated(0.3) benign(0.037) TCGA-95-7567-01 19 17330029 17330029 G A USE1 Missense_Mutation p.A144T 0.31 tolerated(0.49) benign(0.002) TCGA-95-7567-01 19 19162560 19162560 T C ARMC6 Missense_Mutation p.Y137H 0.16 deleterious(0.05) possibly_damaging(0.515) TCGA-95-7567-01 19 19369631 19369631 C A HAPLN4 Missense_Mutation p.R173L 0.38 deleterious(0) possibly_damaging(0.687) TCGA-95-7567-01 19 19381855 19381855 C A TM6SF2 Missense_Mutation p.V59F 0.31 tolerated(0.7) benign(0.101) TCGA-95-7567-01 19 19748726 19748726 C T GMIP Intron 0.15 TCGA-95-7567-01 19 1987200 1987200 T G BTBD2 Missense_Mutation p.I412L 0.11 tolerated(0.12) benign(0.033) TCGA-95-7567-01 19 20044841 20044841 T C ZNF93 Silent p.H359H 0.12 TCGA-95-7567-01 19 2132509 2132509 T G AP3D1 Silent p.P141P 0.08 TCGA-95-7567-01 19 21588564 21588564 T C ZNF493 Silent p.G53G 0.19 TCGA-95-7567-01 19 30935669 30935669 G T ZNF536 Silent p.S400S 0.23 TCGA-95-7567-01 19 31039043 31039043 G T ZNF536 Missense_Mutation p.R839S 0.22 deleterious(0) probably_damaging(0.989) TCGA-95-7567-01 19 33486947 33486947 C T RHPN2 Missense_Mutation p.A469T 0.18 deleterious(0.01) benign(0.377) TCGA-95-7567-01 19 34949785 34949785 C T UBA2 Missense_Mutation p.R453W 0.15 tolerated(0.22) benign(0.339) TCGA-95-7567-01 19 35451185 35451185 A G ZNF792 Silent p.D79D 0.12 TCGA-95-7567-01 19 36233696 36233696 G A U2AF1L4 Nonsense_Mutation p.R138* 0.15 TCGA-95-7567-01 19 36342575 36342575 C T NPHS1 Splice_Site p.X20_splice 0.27 TCGA-95-7567-01 19 37644495 37644495 C T ZNF585A Nonsense_Mutation p.W47* 0.19 TCGA-95-7567-01 19 3822091 3822091 C G ZFR2 Silent p.R493R 0.38 TCGA-95-7567-01 19 38905617 38905617 G C RASGRP4 Missense_Mutation p.D367E 0.21 deleterious(0) possibly_damaging(0.816) TCGA-95-7567-01 19 40487098 40487098 G T PSMC4 Splice_Site p.X382_splice 0.23 TCGA-95-7567-01 19 40895596 40895596 C T HIPK4 Missense_Mutation p.V72I 0.06 tolerated(1) benign(0.009) TCGA-95-7567-01 19 41211353 41211353 C G ADCK4 Splice_Site p.X123_splice 0.21 TCGA-95-7567-01 19 41355874 41355874 G T CYP2A6 Silent p.R64R 0.17 TCGA-95-7567-01 19 42558011 42558011 C T GRIK5 Missense_Mutation p.R376H 0.12 tolerated(0.09) benign(0.015) TCGA-95-7567-01 19 42584388 42584388 A T ZNF574 Missense_Mutation p.T544S 0.20 deleterious(0.02) benign(0.049) TCGA-95-7567-01 19 42827784 42827784 G A TMEM145 Missense_Mutation p.R415H 0.21 deleterious(0) probably_damaging(0.944) TCGA-95-7567-01 19 43763165 43763165 G A PSG9 Nonsense_Mutation p.Q278* 0.19 TCGA-95-7567-01 19 44515277 44515277 A G ZNF230 Silent p.K362K 0.24 TCGA-95-7567-01 19 44515285 44515285 G A ZNF230 Missense_Mutation p.R365K 0.26 tolerated(1) benign(0.002) TCGA-95-7567-01 19 45419501 45419501 A G APOC1 Missense_Mutation p.K38R 0.15 deleterious(0.03) benign(0.096) TCGA-95-7567-01 19 47424279 47424279 C T ARHGAP35 Nonsense_Mutation p.R783* 0.10 TCGA-95-7567-01 19 48945587 48945587 G A GRIN2D Missense_Mutation p.R874Q 0.24 deleterious(0) possibly_damaging(0.805) TCGA-95-7567-01 19 48981711 48981711 A G CYTH2 Missense_Mutation p.Y325C 0.11 deleterious(0.02) possibly_damaging(0.483) TCGA-95-7567-01 19 49843627 49843627 C T CD37 3'UTR 0.31 TCGA-95-7567-01 19 50185191 50185191 A G PRMT1 Missense_Mutation p.T73A 0.15 deleterious(0.05) possibly_damaging(0.522) TCGA-95-7567-01 19 52394472 52394472 A G ZNF649 Missense_Mutation p.V306A 0.09 tolerated(0.09) benign(0.034) TCGA-95-7567-01 19 53384157 53384157 T C ZNF320 Missense_Mutation p.T408A 0.19 deleterious(0.01) benign(0.244) TCGA-95-7567-01 19 54314394 54314394 C A NLRP12 Missense_Mutation p.Q173H 0.29 deleterious(0) probably_damaging(0.962) TCGA-95-7567-01 19 54649361 54649361 C T CNOT3 Missense_Mutation p.R171W 0.32 deleterious(0) probably_damaging(0.994) TCGA-95-7567-01 19 54802050 54802050 C A LILRA3 Missense_Mutation p.A380S 0.24 deleterious(0.02) probably_damaging(0.964) TCGA-95-7567-01 19 54844801 54844801 T C LILRA4 3'UTR 0.26 TCGA-95-7567-01 19 55494830 55494830 C T NLRP2 Silent p.C588C 0.22 TCGA-95-7567-01 19 55656924 55656924 C T TNNT1 Missense_Mutation p.R39H 0.29 deleterious(0) unknown(0) TCGA-95-7567-01 19 56303748 56303748 C A NLRP11 Missense_Mutation p.C811F 0.27 tolerated(0.11) benign(0.171) TCGA-95-7567-01 19 57840569 57840569 A G ZNF543 Missense_Mutation p.N580S 0.22 tolerated(0.3) benign(0.001) TCGA-95-7567-01 19 58187749 58187749 G A ZSCAN4 Missense_Mutation p.S79N 0.25 deleterious(0) probably_damaging(0.961) TCGA-95-7567-01 19 6222511 6222511 G A MLLT1 Missense_Mutation p.A244V 0.30 tolerated(0.29) benign(0.09) TCGA-95-7567-01 19 8842180 8842180 G A OR2Z1 Missense_Mutation p.A264T 0.27 tolerated(0.11) benign(0.015) TCGA-95-7567-01 19 9028257 9028257 A T MUC16 Missense_Mutation p.Y12179N 0.10 possibly_damaging(0.565) TCGA-95-7567-01 19 9062971 9062971 T C MUC16 Missense_Mutation p.T8159A 0.19 unknown(0) TCGA-95-7567-01 19 9074654 9074654 G T MUC16 Silent p.G4264G 0.33 TCGA-95-7567-01 19 9077354 9077354 T C MUC16 Silent p.T3364T 0.19 TCGA-95-7567-01 19 9085517 9085517 C A MUC16 Missense_Mutation p.A2100S 0.18 unknown(0) TCGA-95-7567-01 19 9087193 9087193 G T MUC16 Missense_Mutation p.T1541K 0.17 unknown(0) TCGA-95-7567-01 19 9362502 9362502 T C OR7E24 Silent p.S261S 0.24 TCGA-95-7567-01 19 9646885 9646885 A G ZNF426 Silent p.H8H 0.14 TCGA-95-7567-01 1 100672099 100672099 C T DBT Missense_Mutation p.A371T 0.07 deleterious(0) probably_damaging(0.936) TCGA-95-7567-01 1 10179590 10179590 T C UBE4B Missense_Mutation p.V453A 0.11 deleterious(0.02) benign(0.165) TCGA-95-7567-01 1 103343560 103343560 T G COL11A1 3'UTR 0.24 TCGA-95-7567-01 1 103385907 103385907 G T COL11A1 Missense_Mutation p.P1241H 0.23 unknown(0) TCGA-95-7567-01 1 103453264 103453264 T C COL11A1 Silent p.E809E 0.09 TCGA-95-7567-01 1 109338865 109338866 - T STXBP3 Frame_Shift_Ins p.G375Wfs*3 0.25 TCGA-95-7567-01 1 109884687 109884687 T C SORT1 Missense_Mutation p.I353V 0.29 tolerated(0.23) benign(0.069) TCGA-95-7567-01 1 110213909 110213909 G A GSTM2 Missense_Mutation p.E121K 0.12 deleterious(0.01) benign(0.128) TCGA-95-7567-01 1 110231320 110231320 G A GSTM1 Nonsense_Mutation p.W46* 0.46 TCGA-95-7567-01 1 114249340 114249340 T A PHTF1 Missense_Mutation p.H425L 0.28 deleterious(0) possibly_damaging(0.843) TCGA-95-7567-01 1 11561464 11561464 G A PTCHD2 Missense_Mutation p.D139N 0.34 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-95-7567-01 1 11561954 11561954 A C PTCHD2 Missense_Mutation p.E302A 0.22 deleterious(0) probably_damaging(0.995) TCGA-95-7567-01 1 115829316 115829316 T C NGF Missense_Mutation p.Q34R 0.21 tolerated(0.12) benign(0.002) TCGA-95-7567-01 1 118548157 118548157 T C SPAG17 Silent p.S1552S 0.11 TCGA-95-7567-01 1 119427471 119427471 T G TBX15 Missense_Mutation p.S459R 0.14 deleterious_low_confidence(0) benign(0.057) TCGA-95-7567-01 1 120480031 120480031 C T NOTCH2 Silent p.T1132T 0.18 TCGA-95-7567-01 1 12368591 12368591 T G VPS13D Missense_Mutation p.D2181E 0.21 benign(0.001) TCGA-95-7567-01 1 12855851 12855851 C A PRAMEF1 Silent p.S377S 0.16 TCGA-95-7567-01 1 12921200 12921200 C A PRAMEF2 Missense_Mutation p.L331M 0.08 tolerated(0.17) possibly_damaging(0.521) TCGA-95-7567-01 1 12921234 12921234 C A PRAMEF2 Missense_Mutation p.A342D 0.61 deleterious(0.01) benign(0.296) TCGA-95-7567-01 1 13001249 13001249 T G PRAMEF6 Missense_Mutation p.Q145P 0.06 tolerated(0.15) probably_damaging(0.999) TCGA-95-7567-01 1 13474870 13474870 T C PRAMEF18 Missense_Mutation p.D420G 0.21 tolerated(0.2) benign(0.036) TCGA-95-7567-01 1 145440510 145440510 T C TXNIP Silent p.V272V 0.16 TCGA-95-7567-01 1 148022954 148022954 A G NBPF14 Missense_Mutation p.W186R 0.05 tolerated(0.14) benign(0.03) TCGA-95-7567-01 1 149882414 149882414 C T SV2A Missense_Mutation p.A307T 0.09 deleterious(0) probably_damaging(1) TCGA-95-7567-01 1 150255794 150255794 G - C1orf51 Frame_Shift_Del p.A41Pfs*66 0.18 TCGA-95-7567-01 1 150255915 150255915 C T C1orf51 Missense_Mutation p.P80S 0.10 tolerated(0.62) benign(0.003) TCGA-95-7567-01 1 150958830 150958830 T C ANXA9 Missense_Mutation p.V164A 0.10 deleterious(0.03) benign(0.003) TCGA-95-7567-01 1 151774831 151774831 C T LINGO4 Missense_Mutation p.G117D 0.10 tolerated(0.06) probably_damaging(0.969) TCGA-95-7567-01 1 152328032 152328032 C T FLG2 Missense_Mutation p.G744S 0.13 unknown(0) TCGA-95-7567-01 1 153655008 153655008 C T NPR1 Silent p.G402G 0.11 TCGA-95-7567-01 1 153954676 153954676 T C RAB13 Intron 0.10 TCGA-95-7567-01 1 154231458 154231458 A G UBAP2L Silent p.Q816Q 0.06 TCGA-95-7567-01 1 154557298 154557298 T C ADAR Missense_Mutation p.Y1222C 0.19 deleterious(0.03) possibly_damaging(0.682) TCGA-95-7567-01 1 156182918 156182918 C A PMF1 Missense_Mutation p.L38I 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.842) TCGA-95-7567-01 1 156811294 156811294 A T INSRR Missense_Mutation p.I1185N 0.11 deleterious(0) probably_damaging(1) TCGA-95-7567-01 1 156823913 156823913 C T INSRR Missense_Mutation p.G90R 0.28 deleterious(0) probably_damaging(1) TCGA-95-7567-01 1 156875187 156875187 G T PEAR1 Missense_Mutation p.G93V 0.19 deleterious(0) probably_damaging(1) TCGA-95-7567-01 1 156914894 156914894 G A ARHGEF11 Missense_Mutation p.R970C 0.15 deleterious(0.01) benign(0.015) TCGA-95-7567-01 1 157803024 157803025 - A CD5L Frame_Shift_Ins p.H333Sfs*39 0.11 TCGA-95-7567-01 1 158064144 158064144 C T KIRREL Silent p.C587C 0.21 TCGA-95-7567-01 1 158326568 158326568 T C CD1E Missense_Mutation p.M350T 0.14 tolerated(1) benign(0.001) TCGA-95-7567-01 1 158435462 158435462 C T OR10K1 Silent p.F37F 0.07 TCGA-95-7567-01 1 158584046 158584046 T C SPTA1 Missense_Mutation p.Y2280C 0.11 deleterious(0) possibly_damaging(0.907) TCGA-95-7567-01 1 159923178 159923178 A C SLAMF9 Missense_Mutation p.D104E 0.07 deleterious(0) probably_damaging(0.958) TCGA-95-7567-01 1 160328200 160328200 T A NCSTN 3'UTR 0.15 TCGA-95-7567-01 1 16071048 16071048 T C TMEM82 Missense_Mutation p.Y244H 0.18 deleterious(0.03) possibly_damaging(0.86) TCGA-95-7567-01 1 161954714 161954714 C A OLFML2B Missense_Mutation p.G511W 0.18 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 1 165721382 165721382 T G TMCO1 Missense_Mutation p.I145L 0.15 tolerated(0.11) benign(0.053) TCGA-95-7567-01 1 167042734 167042734 T G GPA33 Missense_Mutation p.D29A 0.12 tolerated(0.21) benign(0.077) TCGA-95-7567-01 1 168670267 168670267 G A DPT Missense_Mutation p.S176F 0.12 deleterious(0) probably_damaging(0.983) TCGA-95-7567-01 1 171763663 171763663 T C METTL13 Silent p.P607P 0.15 TCGA-95-7567-01 1 173840201 173840201 G T ZBTB37 Missense_Mutation p.G280C 0.07 tolerated(0.08) probably_damaging(0.912) TCGA-95-7567-01 1 175105027 175105027 G A TNN Nonsense_Mutation p.W1126* 0.16 TCGA-95-7567-01 1 176915113 176915113 T C ASTN1 Missense_Mutation p.N733S 0.15 deleterious(0.04) benign(0.254) TCGA-95-7567-01 1 178410697 178410697 G T RASAL2 Missense_Mutation p.S281I 0.36 deleterious(0.01) possibly_damaging(0.812) TCGA-95-7567-01 1 179013194 179013194 T C FAM20B Missense_Mutation p.V71A 0.14 deleterious(0.03) benign(0.358) TCGA-95-7567-01 1 179399628 179399629 - T AXDND1 Frame_Shift_Ins p.W459Lfs*7 0.16 TCGA-95-7567-01 1 181727990 181727990 G A CACNA1E Missense_Mutation p.A1531T 0.05 deleterious(0) possibly_damaging(0.798) TCGA-95-7567-01 1 182798087 182798087 A G NPL 3'UTR 0.11 TCGA-95-7567-01 1 183616967 183616967 A G APOBEC4 Missense_Mutation p.V317A 0.11 deleterious(0) benign(0.171) TCGA-95-7567-01 1 184764055 184764055 T C FAM129A 3'UTR 0.17 TCGA-95-7567-01 1 185964206 185964206 G A HMCN1 Silent p.T1255T 0.09 TCGA-95-7567-01 1 186089238 186089238 G C HMCN1 Missense_Mutation p.A4064P 0.24 possibly_damaging(0.86) TCGA-95-7567-01 1 186310226 186310226 G A TPR Silent p.S1318S 0.09 TCGA-95-7567-01 1 190424011 190424011 G A BRINP3 Nonsense_Mutation p.R4* 0.07 TCGA-95-7567-01 1 1961597 1961598 - G GABRD Frame_Shift_Ins p.I415Hfs*14 0.18 TCGA-95-7567-01 1 196762670 196762670 T C CFHR3 3'UTR 0.10 TCGA-95-7567-01 1 197115347 197115347 A G ASPM Missense_Mutation p.V74A 0.11 tolerated(0.33) benign(0.001) TCGA-95-7567-01 1 197890769 197890769 A G LHX9 Missense_Mutation p.D238G 0.15 deleterious(0.03) benign(0.077) TCGA-95-7567-01 1 198677283 198677283 A T PTPRC Missense_Mutation p.H309L 0.18 tolerated(0.82) benign(0) TCGA-95-7567-01 1 198725188 198725189 - C PTPRC Frame_Shift_Ins p.E1269Rfs*5 0.13 TCGA-95-7567-01 1 19992715 19992715 G A HTR6 Missense_Mutation p.A157T 0.15 tolerated(0.32) benign(0.027) TCGA-95-7567-01 1 200558480 200558480 C A KIF14 Missense_Mutation p.R993S 0.12 deleterious(0) possibly_damaging(0.843) TCGA-95-7567-01 1 200558485 200558485 G C KIF14 Missense_Mutation p.Q992E 0.10 tolerated(0.53) benign(0.003) TCGA-95-7567-01 1 200635559 200635559 C A DDX59 Missense_Mutation p.G104W 0.34 deleterious(0) probably_damaging(1) TCGA-95-7567-01 1 200960786 200960786 T A KIF21B Missense_Mutation p.E818V 0.12 deleterious(0) probably_damaging(0.991) TCGA-95-7567-01 1 201454441 201454441 C T CSRP1 Missense_Mutation p.A159T 0.14 tolerated(1) benign(0.024) TCGA-95-7567-01 1 203134679 203134679 T G ADORA1 Missense_Mutation p.L211R 0.06 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 1 203140535 203140535 C T MYBPH Missense_Mutation p.A257T 0.18 deleterious(0.02) possibly_damaging(0.464) TCGA-95-7567-01 1 204425008 204425008 C T PIK3C2B Missense_Mutation p.R640H 0.16 deleterious(0.03) probably_damaging(0.985) TCGA-95-7567-01 1 205126496 205126496 T A DSTYK Missense_Mutation p.T753S 0.20 tolerated(0.73) benign(0.004) TCGA-95-7567-01 1 207751302 207751302 T C CR1 Missense_Mutation p.Y1564H 0.13 tolerated(0.17) possibly_damaging(0.801) TCGA-95-7567-01 1 20827840 20827840 G A MUL1 Silent p.G134G 0.15 TCGA-95-7567-01 1 20998460 20998460 G T KIF17 Missense_Mutation p.P898H 0.19 deleterious(0.02) probably_damaging(1) TCGA-95-7567-01 1 21268372 21268372 C A EIF4G3 Silent p.T375T 0.23 TCGA-95-7567-01 1 213009242 213009242 T C C1orf227 Missense_Mutation p.M84V 0.15 tolerated(0.17) benign(0) TCGA-95-7567-01 1 213009321 213009321 G C C1orf227 Silent p.S57S 0.28 TCGA-95-7567-01 1 213186655 213186655 C A ANGEL2 Missense_Mutation p.M55I 0.08 tolerated_low_confidence(0.3) benign(0.002) TCGA-95-7567-01 1 21573844 21573844 C T ECE1 Missense_Mutation p.A345T 0.16 tolerated(0.43) possibly_damaging(0.537) TCGA-95-7567-01 1 215848155 215848155 G T USH2A Silent p.A4366A 0.44 TCGA-95-7567-01 1 216363655 216363655 G T USH2A Missense_Mutation p.P1436T 0.09 probably_damaging(0.999) TCGA-95-7567-01 1 22214083 22214083 A G HSPG2 Missense_Mutation p.M263T 0.08 benign(0) TCGA-95-7567-01 1 228109378 228109378 G A WNT9A Silent p.C313C 0.15 TCGA-95-7567-01 1 228288785 228288785 A G C1orf35 3'UTR 0.14 TCGA-95-7567-01 1 228548090 228548090 G T OBSCN Intron 0.08 TCGA-95-7567-01 1 22965741 22965741 C A C1QA Silent p.T193T 0.11 TCGA-95-7567-01 1 234529224 234529224 T C TARBP1 Missense_Mutation p.R1482G 0.15 deleterious(0) probably_damaging(1) TCGA-95-7567-01 1 235826260 235826260 T C LYST Missense_Mutation p.S3796G 0.05 tolerated(0.07) benign(0.423) TCGA-95-7567-01 1 235976278 235976279 - T LYST Frame_Shift_Ins p.A93Gfs*5 0.12 TCGA-95-7567-01 1 236973836 236973836 C T MTR Missense_Mutation p.P148L 0.12 deleterious(0) probably_damaging(1) TCGA-95-7567-01 1 237711753 237711753 A C RYR2 Missense_Mutation p.K977Q 0.29 possibly_damaging(0.905) TCGA-95-7567-01 1 237711755 237711755 G T RYR2 Missense_Mutation p.K977N 0.30 possibly_damaging(0.831) TCGA-95-7567-01 1 237802422 237802422 G T RYR2 Missense_Mutation p.A2346S 0.17 possibly_damaging(0.867) TCGA-95-7567-01 1 237813350 237813350 C A RYR2 Silent p.T2562T 0.23 TCGA-95-7567-01 1 238090244 238090244 C A RP11-193H5.1 RNA 0.38 TCGA-95-7567-01 1 238090543 238090543 C T RP11-193H5.1 RNA 0.06 TCGA-95-7567-01 1 240072567 240072567 C A CHRM3 3'UTR 0.23 TCGA-95-7567-01 1 240255602 240255602 A T FMN2 Nonsense_Mutation p.K65* 0.36 TCGA-95-7567-01 1 244715642 244715642 A G C1orf101 Silent p.V185V 0.17 TCGA-95-7567-01 1 247768980 247768980 C G OR2G3 Silent p.V31V 0.04 TCGA-95-7567-01 1 248004548 248004548 G T OR11L1 Silent p.P217P 0.19 TCGA-95-7567-01 1 248309002 248309002 C A OR2M5 Missense_Mutation p.L185I 0.12 deleterious(0.01) possibly_damaging(0.881) TCGA-95-7567-01 1 248737392 248737392 A G OR2T34 Missense_Mutation p.Y223H 0.10 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 1 248737797 248737797 C A OR2T34 Missense_Mutation p.V88L 0.21 tolerated(0.3) benign(0.001) TCGA-95-7567-01 1 248789505 248789505 G T OR2T11 Missense_Mutation p.Q309K 0.10 tolerated(0.25) benign(0.001) TCGA-95-7567-01 1 248845570 248845570 C G OR14I1 Silent p.L12L 0.47 TCGA-95-7567-01 1 249211112 249211112 G A PGBD2 Missense_Mutation p.R110H 0.09 tolerated(0.13) benign(0.001) TCGA-95-7567-01 1 2526778 2526778 C A MMEL1 Missense_Mutation p.Q507H 0.18 tolerated(0.18) benign(0.17) TCGA-95-7567-01 1 27480569 27480569 C T SLC9A1 Missense_Mutation p.R86H 0.12 deleterious(0.04) benign(0.004) TCGA-95-7567-01 1 28880162 28880162 A G TRNAU1AP Missense_Mutation p.Y13C 0.32 deleterious(0) probably_damaging(0.98) TCGA-95-7567-01 1 31899543 31899543 C T SERINC2 Missense_Mutation p.A227V 0.19 tolerated(0.88) benign(0.004) TCGA-95-7567-01 1 32120447 32120447 T G COL16A1 Missense_Mutation p.N1435H 0.17 probably_damaging(0.988) TCGA-95-7567-01 1 39494495 39494495 C G NDUFS5 Missense_Mutation p.C33W 0.34 deleterious(0) possibly_damaging(0.67) TCGA-95-7567-01 1 43851674 43851674 T C MED8 Silent p.V239V 0.20 TCGA-95-7567-01 1 44071069 44071069 G A PTPRF Missense_Mutation p.R1115H 0.30 tolerated(0.55) benign(0.008) TCGA-95-7567-01 1 46752036 46752036 G T LRRC41 Silent p.R165R 0.22 TCGA-95-7567-01 1 47278265 47278265 C T CYP4B1 Silent p.A155A 0.09 TCGA-95-7567-01 1 54497896 54497896 C G TMEM59 Missense_Mutation p.R300T 0.29 tolerated(0.96) benign(0.004) TCGA-95-7567-01 1 57209836 57209836 G - C1orf168 Frame_Shift_Del p.R498Gfs*7 0.21 TCGA-95-7567-01 1 62907238 62907238 A G USP1 Missense_Mutation p.N84D 0.32 deleterious(0.03) possibly_damaging(0.895) TCGA-95-7567-01 1 6324738 6324738 C T ACOT7 Silent p.E354E 0.10 TCGA-95-7567-01 1 6504661 6504661 A T ESPN Missense_Mutation p.S371C 0.39 tolerated(0.13) benign(0.049) TCGA-95-7567-01 1 6631174 6631174 C T TAS1R1 Missense_Mutation p.L133F 0.13 tolerated(0.9) benign(0.02) TCGA-95-7567-01 1 67648610 67648610 C A IL23R Nonsense_Mutation p.Y153* 0.30 TCGA-95-7567-01 1 70715732 70715732 T C SRSF11 Splice_Site p.X373_splice 0.21 TCGA-95-7567-01 1 76877904 76877905 - T ST6GALNAC3 Frame_Shift_Ins p.K145Qfs*53 0.24 TCGA-95-7567-01 1 82409430 82409430 T C LPHN2 Missense_Mutation p.F392S 0.28 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 1 87045266 87045266 A G CLCA4 Silent p.G784G 0.24 TCGA-95-7567-01 1 89844084 89844084 A T GBP6 Silent p.T179T 0.34 TCGA-95-7567-01 1 9324171 9324171 C T H6PD Missense_Mutation p.P540L 0.17 deleterious(0.01) benign(0.313) TCGA-95-7567-01 1 93602423 93602423 C T MTF2 Nonsense_Mutation p.Q541* 0.29 TCGA-95-7567-01 1 99772192 99772192 G A LPPR4 Missense_Mutation p.E640K 0.25 tolerated(0.18) probably_damaging(0.952) TCGA-95-7567-01 20 15480436 15480436 G T MACROD2 Missense_Mutation p.A197S 0.31 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 20 1638402 1638403 - G SIRPG 5'UTR 0.26 TCGA-95-7567-01 20 23433365 23433365 C T CST11 Silent p.K28K 0.25 TCGA-95-7567-01 20 30497577 30497577 G A TTLL9 Missense_Mutation p.R119Q 0.37 deleterious(0) probably_damaging(0.995) TCGA-95-7567-01 20 33875106 33875106 C A FAM83C Silent p.V492V 0.06 TCGA-95-7567-01 20 34526967 34526967 G T PHF20 Silent p.L883L 0.37 TCGA-95-7567-01 20 34828453 34828453 G A AAR2 Silent p.T221T 0.20 TCGA-95-7567-01 20 39795149 39795149 T C PLCG1 Silent p.A678A 0.14 TCGA-95-7567-01 20 40074364 40074364 G A CHD6 Missense_Mutation p.P1273L 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-95-7567-01 20 42271134 42271134 T G IFT52 Missense_Mutation p.L379R 0.12 deleterious(0) probably_damaging(0.993) TCGA-95-7567-01 20 42341662 42341662 G A MYBL2 Silent p.K580K 0.36 TCGA-95-7567-01 20 43058204 43058204 G - HNF4A Frame_Shift_Del p.S443Lfs*76 0.16 TCGA-95-7567-01 20 43132458 43132458 A G SERINC3 Silent p.S351S 0.14 TCGA-95-7567-01 20 47858627 47858627 A G DDX27 Missense_Mutation p.E698G 0.14 deleterious(0) benign(0.309) TCGA-95-7567-01 20 52831911 52831911 T C PFDN4 Missense_Mutation p.Y69H 0.09 deleterious(0) probably_damaging(1) TCGA-95-7567-01 20 57484421 57484421 G A GNAS Missense_Mutation p.R844H 0.16 deleterious(0.01) probably_damaging(1) TCGA-95-7567-01 20 60791154 60791154 G T HRH3 Missense_Mutation p.H416N 0.20 deleterious(0) benign(0.026) TCGA-95-7567-01 20 61458629 61458629 G A COL9A3 Missense_Mutation p.G277S 0.21 deleterious(0) unknown(0) TCGA-95-7567-01 20 61468525 61468525 C A COL9A3 Missense_Mutation p.P565Q 0.05 tolerated(0.09) probably_damaging(1) TCGA-95-7567-01 20 61510873 61510873 C A DIDO1 Silent p.R2145R 0.43 TCGA-95-7567-01 20 62331707 62331708 - C ARFRP1 3'UTR 0.19 TCGA-95-7567-01 21 10942989 10942989 T A TPTE Missense_Mutation p.I200F 0.07 tolerated(0.13) possibly_damaging(0.652) TCGA-95-7567-01 21 15870868 15870868 C A SAMSN1 Missense_Mutation p.D340Y 0.27 deleterious(0) probably_damaging(0.998) TCGA-95-7567-01 21 27136661 27136661 G T GABPA Nonsense_Mutation p.G315* 0.31 TCGA-95-7567-01 21 27141599 27141599 A T GABPA 3'UTR 0.28 TCGA-95-7567-01 21 27840881 27840881 G T CYYR1 Missense_Mutation p.T135N 0.26 deleterious(0) possibly_damaging(0.465) TCGA-95-7567-01 21 30325585 30325585 G A LTN1 Missense_Mutation p.R1111C 0.16 tolerated(0.19) benign(0.001) TCGA-95-7567-01 21 31964831 31964831 G T KRTAP6-3 Missense_Mutation p.G16W 0.28 unknown(0) TCGA-95-7567-01 21 32253380 32253380 C T KRTAP11-1 Missense_Mutation p.C155Y 0.22 tolerated(0.11) benign(0.011) TCGA-95-7567-01 21 33068519 33068519 A G SCAF4 Silent p.D325D 0.13 TCGA-95-7567-01 21 34166092 34166092 A G C21orf62 Missense_Mutation p.V214A 0.25 deleterious(0.04) benign(0.03) TCGA-95-7567-01 21 43547904 43547904 G A UMODL1 Missense_Mutation p.R1346H 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-95-7567-01 21 45523433 45523433 G A TRAPPC10 3'UTR 0.21 TCGA-95-7567-01 21 45811243 45811243 T C TRPM2 Missense_Mutation p.L510P 0.10 deleterious(0) probably_damaging(0.926) TCGA-95-7567-01 21 45971263 45971263 A G KRTAP10-2 Missense_Mutation p.C27R 0.18 deleterious(0) possibly_damaging(0.761) TCGA-95-7567-01 21 47360050 47360050 G T PCBP3 Missense_Mutation p.R339L 0.13 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 21 47777012 47777012 A C PCNT Missense_Mutation p.E687A 0.39 possibly_damaging(0.636) TCGA-95-7567-01 22 17072284 17072284 C G CCT8L2 Missense_Mutation p.R386P 0.05 tolerated(0.07) probably_damaging(0.93) TCGA-95-7567-01 22 17447184 17447184 C G GAB4 Missense_Mutation p.G365A 0.10 deleterious(0.01) benign(0.007) TCGA-95-7567-01 22 18064154 18064154 G T SLC25A18 Silent p.A58A 0.10 TCGA-95-7567-01 22 19950324 19950324 T G COMT Missense_Mutation p.V92G 0.19 deleterious(0) probably_damaging(1) TCGA-95-7567-01 22 20079413 20079413 G T DGCR8 Missense_Mutation p.G509V 0.41 deleterious(0) possibly_damaging(0.785) TCGA-95-7567-01 22 20940865 20940866 - T MED15 Frame_Shift_Ins p.L749Pfs*70 0.14 TCGA-95-7567-01 22 21157563 21157563 C T PI4KA Missense_Mutation p.V503M 0.12 tolerated(0.2) benign(0.071) TCGA-95-7567-01 22 21385901 21385901 A T SLC7A4 Silent p.A67A 0.23 TCGA-95-7567-01 22 30771484 30771484 C T CCDC157 Silent p.S563S 0.19 TCGA-95-7567-01 22 38075703 38075703 A G LGALS1 Missense_Mutation p.N119D 0.21 tolerated(0.71) benign(0.004) TCGA-95-7567-01 22 38212698 38212698 G T GCAT Silent p.V437V 0.19 TCGA-95-7567-01 22 38503887 38503887 C T BAIAP2L2 Missense_Mutation p.R83Q 0.18 deleterious(0.01) probably_damaging(0.991) TCGA-95-7567-01 22 39176983 39176983 T G DNAL4 Missense_Mutation p.E34A 0.15 deleterious(0) possibly_damaging(0.803) TCGA-95-7567-01 22 41556648 41556648 A T EP300 Missense_Mutation p.Y1198F 0.22 possibly_damaging(0.739) TCGA-95-7567-01 22 43533109 43533109 C A MCAT Missense_Mutation p.R236M 0.07 deleterious(0) probably_damaging(0.966) TCGA-95-7567-01 22 50437719 50437719 C T IL17REL Splice_Site p.X201_splice 0.31 TCGA-95-7567-01 2 100020219 100020219 C T REV1 Silent p.A1035A 0.28 TCGA-95-7567-01 2 103148849 103148849 G A SLC9A4 Missense_Mutation p.G700E 0.07 tolerated(1) benign(0.004) TCGA-95-7567-01 2 103414332 103414332 T C TMEM182 Silent p.G114G 0.24 TCGA-95-7567-01 2 10584717 10584717 C T ODC1 Silent p.L53L 0.18 TCGA-95-7567-01 2 105858858 105858858 G T GPR45 Missense_Mutation p.Q181H 0.18 deleterious(0) possibly_damaging(0.822) TCGA-95-7567-01 2 108626899 108626899 G T SLC5A7 Missense_Mutation p.G442V 0.29 deleterious(0) probably_damaging(0.997) TCGA-95-7567-01 2 109432411 109432411 G A CCDC138 Silent p.G352G 0.08 TCGA-95-7567-01 2 111721234 111721234 A C ACOXL Intron 0.12 TCGA-95-7567-01 2 116593767 116593767 A T DPP10 Missense_Mutation p.K666I 0.10 tolerated(0.16) benign(0.374) TCGA-95-7567-01 2 11735467 11735467 T C GREB1 Missense_Mutation p.V596A 0.14 tolerated(0.11) possibly_damaging(0.529) TCGA-95-7567-01 2 11737992 11737992 T C GREB1 Silent p.D680D 0.06 TCGA-95-7567-01 2 11924059 11924059 T C LPIN1 Intron 0.11 TCGA-95-7567-01 2 122513266 122513266 G C TSN 5'UTR 0.44 TCGA-95-7567-01 2 125530593 125530593 A T CNTNAP5 Silent p.V916V 0.29 TCGA-95-7567-01 2 131883392 131883392 A T PLEKHB2 Missense_Mutation p.Y35F 0.13 tolerated(0.07) probably_damaging(1) TCGA-95-7567-01 2 132508378 132508378 A T C2orf27A 5'UTR 0.27 TCGA-95-7567-01 2 133403780 133403780 G A LYPD1 Silent p.C88C 0.15 TCGA-95-7567-01 2 137990553 137990553 C T THSD7B Missense_Mutation p.T667I 0.40 deleterious(0) possibly_damaging(0.607) TCGA-95-7567-01 2 141201983 141201983 T A LRP1B Missense_Mutation p.T3404S 0.23 possibly_damaging(0.621) TCGA-95-7567-01 2 141641441 141641441 G T LRP1B Missense_Mutation p.L1372I 0.45 benign(0.022) TCGA-95-7567-01 2 141751631 141751631 T A LRP1B Missense_Mutation p.Q859H 0.20 probably_damaging(0.954) TCGA-95-7567-01 2 141812773 141812773 G C LRP1B Missense_Mutation p.H488Q 0.21 benign(0.227) TCGA-95-7567-01 2 142237972 142237972 A T LRP1B Missense_Mutation p.H112Q 0.09 possibly_damaging(0.537) TCGA-95-7567-01 2 152534572 152534573 - T NEB Frame_Shift_Ins p.D1129Rfs*3 0.18 TCGA-95-7567-01 2 15468400 15468400 T C NBAS Missense_Mutation p.T1462A 0.17 tolerated(0.8) benign(0) TCGA-95-7567-01 2 155295153 155295153 T A GALNT13 Nonsense_Mutation p.L482* 0.07 TCGA-95-7567-01 2 160901445 160901445 A G PLA2R1 Silent p.V111V 0.19 TCGA-95-7567-01 2 161056554 161056554 G T ITGB6 Nonsense_Mutation p.C7* 0.07 TCGA-95-7567-01 2 163074565 163074565 T C FAP Missense_Mutation p.I231M 0.16 deleterious(0) probably_damaging(0.98) TCGA-95-7567-01 2 166187980 166187980 G A SCN2A Missense_Mutation p.A764T 0.10 tolerated(0.48) probably_damaging(0.939) TCGA-95-7567-01 2 166627100 166627100 C T GALNT3 Missense_Mutation p.M37I 0.23 tolerated(0.33) benign(0) TCGA-95-7567-01 2 166848817 166848817 G T SCN1A Silent p.I1656I 0.50 TCGA-95-7567-01 2 168096393 168096393 C T XIRP2 Missense_Mutation p.T296I 0.42 benign(0.001) TCGA-95-7567-01 2 168099218 168099218 C A XIRP2 Missense_Mutation p.A439E 0.19 benign(0.072) TCGA-95-7567-01 2 169551539 169551539 A G CERS6 Missense_Mutation p.Q196R 0.20 deleterious(0.02) benign(0.046) TCGA-95-7567-01 2 169792755 169792755 C A ABCB11 Silent p.L933L 0.32 TCGA-95-7567-01 2 169801236 169801237 - T ABCB11 Frame_Shift_Ins p.R830Kfs*4 0.18 TCGA-95-7567-01 2 170101223 170101223 C T LRP2 Missense_Mutation p.G1137E 0.18 probably_damaging(0.998) TCGA-95-7567-01 2 172809466 172809466 A C HAT1 Missense_Mutation p.M86L 0.10 tolerated(0.39) benign(0) TCGA-95-7567-01 2 173352323 173352323 T C ITGA6 Missense_Mutation p.C737R 0.15 deleterious(0) probably_damaging(0.997) TCGA-95-7567-01 2 173891410 173891410 C T RAPGEF4 Silent p.F788F 0.21 TCGA-95-7567-01 2 176988216 176988216 G A HOXD9 Silent p.S240S 0.25 TCGA-95-7567-01 2 179402290 179402290 C T TTN Missense_Mutation p.R33215Q 0.18 TCGA-95-7567-01 2 179407396 179407396 G A TTN Silent p.I32395I 0.05 TCGA-95-7567-01 2 179428787 179428787 T C TTN Missense_Mutation p.K27358E 0.28 TCGA-95-7567-01 2 179457128 179457128 G A TTN Silent p.V19868V 0.15 TCGA-95-7567-01 2 179468719 179468719 T G TTN Missense_Mutation p.N18232T 0.16 TCGA-95-7567-01 2 179468741 179468741 C T TTN Missense_Mutation p.G18225R 0.15 TCGA-95-7567-01 2 179593385 179593385 T A TTN Missense_Mutation p.K6423I 0.21 TCGA-95-7567-01 2 180008389 180008389 C T SESTD1 Missense_Mutation p.R260H 0.06 deleterious(0.02) possibly_damaging(0.635) TCGA-95-7567-01 2 182438611 182438611 C A CERKL Missense_Mutation p.G161V 0.18 deleterious(0.02) probably_damaging(0.917) TCGA-95-7567-01 2 182850819 182850819 A G PPP1R1C 5'UTR 0.23 TCGA-95-7567-01 2 183011765 183011765 C A PDE1A Intron 0.10 TCGA-95-7567-01 2 183848087 183848087 C T NCKAP1 Missense_Mutation p.R349H 0.15 deleterious(0) probably_damaging(0.914) TCGA-95-7567-01 2 187627130 187627130 C G FAM171B Missense_Mutation p.H687Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 2 187702270 187702270 C A ZSWIM2 Missense_Mutation p.G169V 0.21 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 2 190738243 190738243 A T PMS1 Missense_Mutation p.Y832F 0.37 tolerated(0.06) benign(0.004) TCGA-95-7567-01 2 196661411 196661411 C T DNAH7 Silent p.G3468G 0.12 TCGA-95-7567-01 2 196749432 196749432 T A DNAH7 Silent p.P1880P 0.23 TCGA-95-7567-01 2 198257171 198257171 T G SF3B1 Silent p.P1257P 0.12 TCGA-95-7567-01 2 201437494 201437494 A G SGOL2 Missense_Mutation p.R809G 0.13 deleterious(0.02) benign(0.072) TCGA-95-7567-01 2 201485502 201485502 T C AOX1 Silent p.L612L 0.19 TCGA-95-7567-01 2 201507471 201507471 A G AOX1 Missense_Mutation p.T932A 0.24 tolerated(1) possibly_damaging(0.859) TCGA-95-7567-01 2 202626489 202626489 C A ALS2 Missense_Mutation p.E76D 0.16 tolerated(0.29) benign(0.008) TCGA-95-7567-01 2 202901109 202901109 C A FZD7 3'UTR 0.14 TCGA-95-7567-01 2 207631781 207631781 C T FASTKD2 Missense_Mutation p.P122S 0.37 tolerated(1) benign(0) TCGA-95-7567-01 2 207804357 207804357 G T CPO Missense_Mutation p.G12W 0.12 deleterious_low_confidence(0) possibly_damaging(0.817) TCGA-95-7567-01 2 210993811 210993811 G A KANSL1L Silent p.L392L 0.18 TCGA-95-7567-01 2 211456690 211456690 T C CPS1 Silent p.N367N 0.19 TCGA-95-7567-01 2 211457612 211457612 C T CPS1 Missense_Mutation p.H372Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 2 21229034 21229034 T G APOB Missense_Mutation p.N3569T 0.19 possibly_damaging(0.515) TCGA-95-7567-01 2 212293190 212293190 C T ERBB4 Missense_Mutation p.A888T 0.12 deleterious(0) probably_damaging(0.948) TCGA-95-7567-01 2 219605282 219605282 A G TTLL4 Missense_Mutation p.S546G 0.05 tolerated(0.14) benign(0) TCGA-95-7567-01 2 219691724 219691724 T C PRKAG3 Silent p.T365T 0.28 TCGA-95-7567-01 2 220146675 220146675 C A DNAJB2 Silent p.R82R 0.28 TCGA-95-7567-01 2 220435105 220435105 G T OBSL1 Missense_Mutation p.R284S 0.27 deleterious(0.01) possibly_damaging(0.546) TCGA-95-7567-01 2 220505321 220505321 G T SLC4A3 Missense_Mutation p.K1176N 0.06 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 2 223085040 223085040 G T PAX3 Missense_Mutation p.P331H 0.19 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-95-7567-01 2 228563570 228563570 G A SLC19A3 Silent p.F287F 0.20 TCGA-95-7567-01 2 231931679 231931680 - A PSMD1 Frame_Shift_Ins p.P125Tfs*3 0.18 TCGA-95-7567-01 2 234545503 234545503 C T UGT1A10 Missense_Mutation p.S112L 0.13 tolerated(0.32) benign(0.021) TCGA-95-7567-01 2 234869468 234869468 C A TRPM8 Missense_Mutation p.P471T 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-95-7567-01 2 234869469 234869469 C A TRPM8 Missense_Mutation p.P471H 0.15 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 2 237103581 237103581 G T ASB18 Silent p.P445P 0.24 TCGA-95-7567-01 2 237103582 237103582 G T ASB18 Missense_Mutation p.P445H 0.20 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 2 237395535 237395535 T C IQCA1 Silent p.R219R 0.27 TCGA-95-7567-01 2 238249452 238249452 T G COL6A3 Missense_Mutation p.S2703R 0.12 unknown(0) TCGA-95-7567-01 2 241418855 241418855 C A ANKMY1 3'UTR 0.28 TCGA-95-7567-01 2 241808422 241808422 G T AGXT Missense_Mutation p.G47V 0.11 deleterious(0) probably_damaging(0.998) TCGA-95-7567-01 2 242128062 242128062 A T ANO7 Missense_Mutation p.Q12H 0.21 deleterious_low_confidence(0.02) benign(0.03) TCGA-95-7567-01 2 24300453 24300454 - G TP53I3 Frame_Shift_Ins p.Q332Pfs*40 0.13 TCGA-95-7567-01 2 24413572 24413572 T A FAM228A 3'UTR 0.56 TCGA-95-7567-01 2 26486254 26486254 A T HADHB Missense_Mutation p.Q39L 0.12 deleterious(0.01) benign(0.027) TCGA-95-7567-01 2 27485788 27485788 C G SLC30A3 5'UTR 0.24 TCGA-95-7567-01 2 27501077 27501077 C G DNAJC5G Missense_Mutation p.L133V 0.36 tolerated(0.13) probably_damaging(0.996) TCGA-95-7567-01 2 27801984 27801984 C T C2orf16 Nonsense_Mutation p.R849* 0.23 TCGA-95-7567-01 2 29016786 29016786 G C PPP1CB Missense_Mutation p.A268P 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-95-7567-01 2 31600099 31600099 T C XDH Missense_Mutation p.E416G 0.35 deleterious(0) probably_damaging(0.963) TCGA-95-7567-01 2 31621554 31621554 G T XDH Silent p.A106A 0.25 TCGA-95-7567-01 2 38960634 38960634 G A GALM Missense_Mutation p.R319H 0.20 tolerated(0.83) benign(0) TCGA-95-7567-01 2 43793906 43793906 A G THADA Missense_Mutation p.S748P 0.19 deleterious(0) possibly_damaging(0.841) TCGA-95-7567-01 2 44050063 44050063 G A ABCG5 Nonsense_Mutation p.R446* 0.27 TCGA-95-7567-01 2 48602604 48602604 A G FOXN2 3'UTR 0.24 TCGA-95-7567-01 2 61705883 61705883 T C XPO1 3'UTR 0.22 TCGA-95-7567-01 2 62112169 62112169 C A CCT4 Nonsense_Mutation p.G56* 0.09 TCGA-95-7567-01 2 68389725 68389725 G A PNO1 Missense_Mutation p.A184T 0.14 deleterious(0.01) probably_damaging(0.992) TCGA-95-7567-01 2 7036001 7036001 T C RSAD2 Silent p.F338F 0.19 TCGA-95-7567-01 2 71191570 71191570 C A ATP6V1B1 Silent p.I382I 0.17 TCGA-95-7567-01 2 73491083 73491083 C T FBXO41 Silent p.E635E 0.45 TCGA-95-7567-01 2 74763974 74763974 A T LOXL3 Nonsense_Mutation p.C258* 0.11 TCGA-95-7567-01 2 75100444 75100444 A T HK2 Silent p.G179G 0.08 TCGA-95-7567-01 2 79253127 79253127 G T REG3G 5'UTR 0.25 TCGA-95-7567-01 2 80801393 80801393 T A CTNNA2 Missense_Mutation p.V616E 0.19 deleterious(0) possibly_damaging(0.846) TCGA-95-7567-01 2 80808944 80808944 G T CTNNA2 Silent p.R669R 0.09 TCGA-95-7567-01 2 89246832 89246832 T C IGKV1-5 Missense_Mutation p.Y113C 0.25 deleterious(0.04) benign(0.012) TCGA-95-7567-01 2 9588365 9588365 G C CPSF3 Missense_Mutation p.L427F 0.07 deleterious(0.02) probably_damaging(0.979) TCGA-95-7567-01 2 99261962 99261962 A G MGAT4A Missense_Mutation p.I273T 0.09 deleterious(0) possibly_damaging(0.5) TCGA-95-7567-01 2 99726005 99726005 A G TSGA10 Intron 0.15 TCGA-95-7567-01 3 10327481 10327481 G T GHRL 3'UTR 0.24 TCGA-95-7567-01 3 112066479 112066479 C A CD200 Missense_Mutation p.P191T 0.34 deleterious(0) probably_damaging(1) TCGA-95-7567-01 3 112324355 112324355 T C CCDC80 Missense_Mutation p.Y921C 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-95-7567-01 3 118865972 118865972 C A C3orf30 Silent p.G312G 0.28 TCGA-95-7567-01 3 121350806 121350806 C A HCLS1 Missense_Mutation p.D450Y 0.06 deleterious(0.01) probably_damaging(0.961) TCGA-95-7567-01 3 124482530 124482530 C T ITGB5 Silent p.T780T 0.14 TCGA-95-7567-01 3 126751317 126751317 G T PLXNA1 Missense_Mutation p.L1773F 0.07 deleterious(0.01) probably_damaging(1) TCGA-95-7567-01 3 128623263 128623263 T C ACAD9 Missense_Mutation p.V355A 0.27 tolerated(0.39) benign(0.013) TCGA-95-7567-01 3 129134220 129134220 C A EFCAB12 Nonsense_Mutation p.E236* 0.40 TCGA-95-7567-01 3 130409378 130409378 A G PIK3R4 Silent p.A1073A 0.07 TCGA-95-7567-01 3 133363056 133363056 T C TOPBP1 Silent p.L552L 0.20 TCGA-95-7567-01 3 138724634 138724634 G A PRR23A Silent p.D159D 0.15 TCGA-95-7567-01 3 1424651 1424651 G T CNTN6 Missense_Mutation p.G731V 0.23 deleterious(0) possibly_damaging(0.541) TCGA-95-7567-01 3 145912140 145912140 C A PLSCR4 3'UTR 0.23 TCGA-95-7567-01 3 150460419 150460419 C G SIAH2 Missense_Mutation p.E162Q 0.25 deleterious(0.02) benign(0.288) TCGA-95-7567-01 3 150659515 150659515 C T CLRN1 Missense_Mutation p.S96N 0.29 tolerated(0.1) benign(0.085) TCGA-95-7567-01 3 150659548 150659548 A C CLRN1 Missense_Mutation p.F85C 0.24 deleterious(0.05) possibly_damaging(0.754) TCGA-95-7567-01 3 153202336 153202336 G A C3orf79 5'UTR 0.27 TCGA-95-7567-01 3 154832920 154832920 G T MME Missense_Mutation p.D112Y 0.18 deleterious(0) probably_damaging(0.995) TCGA-95-7567-01 3 15621450 15621450 T C HACL1 Missense_Mutation p.N257S 0.30 tolerated(0.79) benign(0.004) TCGA-95-7567-01 3 160474420 160474420 C A PPM1L Silent p.R108R 0.07 TCGA-95-7567-01 3 16269082 16269082 T C GALNT15 3'UTR 0.32 TCGA-95-7567-01 3 167750317 167750317 C T GOLIM4 Silent p.A389A 0.22 TCGA-95-7567-01 3 169500335 169500335 C T MYNN Missense_Mutation p.R435C 0.21 deleterious(0) probably_damaging(0.983) TCGA-95-7567-01 3 169569568 169569568 A G LRRC31 Missense_Mutation p.V333A 0.19 tolerated(0.07) benign(0.213) TCGA-95-7567-01 3 169664286 169664286 G T RP11-379K17.4 RNA 0.20 TCGA-95-7567-01 3 179138686 179138686 C T GNB4 Silent p.T29T 0.14 TCGA-95-7567-01 3 180328098 180328098 G A TTC14 Missense_Mutation p.R694H 0.18 tolerated_low_confidence(0.21) unknown(0) TCGA-95-7567-01 3 180693108 180693108 T C FXR1 Silent p.V537V 0.15 TCGA-95-7567-01 3 182605387 182605387 G A ATP11B Missense_Mutation p.S910N 0.21 deleterious(0.01) possibly_damaging(0.649) TCGA-95-7567-01 3 183036004 183036004 G C MCF2L2 Missense_Mutation p.A202G 0.39 deleterious(0) probably_damaging(0.961) TCGA-95-7567-01 3 183209770 183209770 A T KLHL6 Missense_Mutation p.I604N 0.09 deleterious(0) possibly_damaging(0.541) TCGA-95-7567-01 3 18458546 18458546 A G SATB1 Missense_Mutation p.V79A 0.16 deleterious(0) possibly_damaging(0.472) TCGA-95-7567-01 3 187419915 187419915 A G RTP2 Translation_Start_Site p.M1? 0.06 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-95-7567-01 3 190322124 190322124 G A IL1RAP Missense_Mutation p.R91H 0.22 tolerated(0.2) benign(0.177) TCGA-95-7567-01 3 195798336 195798336 G A TFRC Silent p.N206N 0.14 TCGA-95-7567-01 3 21792459 21792459 C A ZNF385D 5'UTR 0.22 TCGA-95-7567-01 3 21792460 21792460 C G ZNF385D 5'UTR 0.26 TCGA-95-7567-01 3 24231827 24231827 T C THRB Splice_Site p.X8_splice 0.19 TCGA-95-7567-01 3 25668743 25668743 C A TOP2B Missense_Mutation p.D646Y 0.25 deleterious(0.01) benign(0.36) TCGA-95-7567-01 3 3084680 3084680 A G CNTN4 Missense_Mutation p.E844G 0.15 tolerated(0.78) benign(0.009) TCGA-95-7567-01 3 32031830 32031830 A G ZNF860 Missense_Mutation p.H420R 0.30 deleterious(0.01) probably_damaging(0.985) TCGA-95-7567-01 3 38294360 38294360 T C OXSR1 Missense_Mutation p.F521S 0.42 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 3 38835492 38835492 G T SCN10A Missense_Mutation p.P4T 0.22 deleterious(0) possibly_damaging(0.798) TCGA-95-7567-01 3 41831195 41831195 C A ULK4 Missense_Mutation p.M717I 0.22 deleterious(0.04) benign(0.064) TCGA-95-7567-01 3 42264609 42264609 G T TRAK1 Missense_Mutation p.G748C 0.23 deleterious(0) probably_damaging(1) TCGA-95-7567-01 3 46063155 46063155 C A XCR1 Missense_Mutation p.W95C 0.32 deleterious(0) probably_damaging(0.997) TCGA-95-7567-01 3 48680236 48680236 A C CELSR3 Missense_Mutation p.S2830A 0.35 tolerated(0.23) probably_damaging(0.989) TCGA-95-7567-01 3 48697504 48697504 C T CELSR3 Missense_Mutation p.R855Q 0.28 deleterious(0) probably_damaging(0.998) TCGA-95-7567-01 3 51733556 51733556 T C TEX264 Silent p.L205L 0.07 TCGA-95-7567-01 3 51864635 51864635 A G IQCF3 Missense_Mutation p.K95E 0.09 deleterious(0.01) probably_damaging(0.959) TCGA-95-7567-01 3 52825838 52825838 G T ITIH1 Missense_Mutation p.A883S 0.17 tolerated(0.53) benign(0.063) TCGA-95-7567-01 3 53218942 53218942 C T PRKCD Silent p.C280C 0.16 TCGA-95-7567-01 3 54798282 54798282 G A CACNA2D3 Silent p.Q428Q 0.22 TCGA-95-7567-01 3 64582668 64582668 C T ADAMTS9 Splice_Site p.X1340_splice 0.33 TCGA-95-7567-01 3 73433717 73433717 G A PDZRN3 Missense_Mutation p.P667L 0.19 tolerated(0.21) benign(0.001) TCGA-95-7567-01 3 74420347 74420347 C A CNTN3 Missense_Mutation p.G220C 0.37 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 3 9781262 9781262 C T BRPF1 Silent p.G393G 0.09 TCGA-95-7567-01 4 103947550 103947550 C A SLC9B2 Nonsense_Mutation p.G531* 0.11 TCGA-95-7567-01 4 109677636 109677636 G T ETNPPL Missense_Mutation p.N116K 0.21 deleterious(0) probably_damaging(0.958) TCGA-95-7567-01 4 114278693 114278693 G T ANK2 Silent p.V2973V 0.29 TCGA-95-7567-01 4 114278694 114278694 G T ANK2 Missense_Mutation p.A2974S 0.29 benign(0.096) TCGA-95-7567-01 4 119234547 119234547 C T PRSS12 Missense_Mutation p.G433D 0.28 deleterious(0.03) probably_damaging(0.969) TCGA-95-7567-01 4 125631202 125631202 G A ANKRD50 Silent p.L155L 0.20 TCGA-95-7567-01 4 126241714 126241714 A T FAT4 Missense_Mutation p.Q1383L 0.26 benign(0.349) TCGA-95-7567-01 4 134071879 134071879 C T PCDH10 Missense_Mutation p.A195V 0.09 tolerated(0.09) possibly_damaging(0.453) TCGA-95-7567-01 4 13617056 13617056 A T BOD1L1 Missense_Mutation p.F147I 0.17 probably_damaging(1) TCGA-95-7567-01 4 149356882 149356882 A G NR3C2 Silent p.T377T 0.31 TCGA-95-7567-01 4 151509207 151509207 T C LRBA Missense_Mutation p.D2119G 0.10 deleterious(0.02) probably_damaging(0.985) TCGA-95-7567-01 4 156835562 156835562 C G TDO2 Missense_Mutation p.R272G 0.25 tolerated(0.42) benign(0.094) TCGA-95-7567-01 4 159520482 159520482 C A RXFP1 Silent p.V97V 0.23 TCGA-95-7567-01 4 164246422 164246422 G T NPY1R 3'UTR 0.26 TCGA-95-7567-01 4 164415933 164415933 C A TMA16 5'UTR 0.25 TCGA-95-7567-01 4 166981331 166981331 A T TLL1 Missense_Mutation p.E666D 0.18 deleterious(0) probably_damaging(0.968) TCGA-95-7567-01 4 170641086 170641086 G A CLCN3 Missense_Mutation p.R824K 0.29 deleterious_low_confidence(0.05) possibly_damaging(0.87) TCGA-95-7567-01 4 175897731 175897731 C A ADAM29 Missense_Mutation p.P352H 0.05 tolerated(0.57) benign(0.033) TCGA-95-7567-01 4 177650751 177650751 G T VEGFC Silent p.L99L 0.10 TCGA-95-7567-01 4 17824746 17824746 G A NCAPG Missense_Mutation p.R420K 0.13 deleterious(0.04) benign(0.163) TCGA-95-7567-01 4 178354388 178354388 G A AGA Missense_Mutation p.A307V 0.20 tolerated(1) benign(0.035) TCGA-95-7567-01 4 184626132 184626132 G C TRAPPC11 Missense_Mutation p.R988S 0.08 deleterious(0) benign(0.402) TCGA-95-7567-01 4 1955101 1955101 T C WHSC1 Missense_Mutation p.C730R 0.07 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 4 20706396 20706396 C T PACRGL Missense_Mutation p.P56S 0.16 tolerated(0.18) possibly_damaging(0.656) TCGA-95-7567-01 4 2083370 2083370 G A POLN Silent p.F766F 0.17 TCGA-95-7567-01 4 248097 248097 C T ZNF876P RNA 0.15 TCGA-95-7567-01 4 37836326 37836326 C T PGM2 Silent p.S112S 0.12 TCGA-95-7567-01 4 42509100 42509100 C T ATP8A1 Silent p.T673T 0.06 TCGA-95-7567-01 4 48530280 48530280 G A FRYL Missense_Mutation p.A2326V 0.17 tolerated(0.13) probably_damaging(0.995) TCGA-95-7567-01 4 4864671 4864671 T C MSX1 Missense_Mutation p.L238P 0.19 deleterious(0) possibly_damaging(0.627) TCGA-95-7567-01 4 55139701 55139701 T C PDGFRA Intron 0.17 TCGA-95-7567-01 4 57244594 57244594 C A AASDH Missense_Mutation p.D130Y 0.47 deleterious(0.01) possibly_damaging(0.907) TCGA-95-7567-01 4 6303549 6303549 G A WFS1 Missense_Mutation p.R676H 0.16 tolerated(0.1) probably_damaging(0.99) TCGA-95-7567-01 4 69978228 69978228 A G UGT2B7 Missense_Mutation p.K455R 0.26 deleterious(0.02) probably_damaging(0.996) TCGA-95-7567-01 4 69978313 69978313 C T UGT2B7 Silent p.L483L 0.25 TCGA-95-7567-01 4 70152507 70152507 G A UGT2B28 Missense_Mutation p.G303D 0.17 deleterious(0.01) possibly_damaging(0.753) TCGA-95-7567-01 4 71889417 71889417 T G DCK Silent p.T181T 0.17 TCGA-95-7567-01 4 72897682 72897682 G T NPFFR2 Missense_Mutation p.A22S 0.26 tolerated_low_confidence(0.22) benign(0.001) TCGA-95-7567-01 4 73179474 73179474 C - ADAMTS3 Frame_Shift_Del p.S556Hfs*105 0.10 TCGA-95-7567-01 4 77276548 77276548 T C CCDC158 Missense_Mutation p.K739E 0.25 deleterious(0) probably_damaging(0.979) TCGA-95-7567-01 4 77936159 77936159 G A SEPT11 Missense_Mutation p.A226T 0.16 tolerated(0.36) benign(0.322) TCGA-95-7567-01 4 82380611 82380611 G T RASGEF1B Silent p.R18R 0.10 TCGA-95-7567-01 4 84358134 84358134 T C HELQ Missense_Mutation p.Y642C 0.12 deleterious(0) probably_damaging(1) TCGA-95-7567-01 4 86916559 86916560 - G ARHGAP24 Frame_Shift_Ins p.N587Efs*3 0.22 TCGA-95-7567-01 4 88106788 88106788 G T KLHL8 Missense_Mutation p.S127Y 0.13 deleterious(0) probably_damaging(0.93) TCGA-95-7567-01 4 891922 891922 G A GAK Nonsense_Mutation p.Q184* 0.19 TCGA-95-7567-01 4 90856406 90856406 G T MMRN1 Missense_Mutation p.Q525H 0.19 tolerated(0.12) benign(0.015) TCGA-95-7567-01 4 94344008 94344008 A T GRID2 Missense_Mutation p.L478F 0.28 deleterious(0) probably_damaging(0.991) TCGA-95-7567-01 4 9452126 9452126 T C DEFB131 Silent p.Y33Y 0.13 TCGA-95-7567-01 4 96051154 96051154 A T BMPR1B Nonsense_Mutation p.R273* 0.21 TCGA-95-7567-01 5 10461362 10461362 C A ROPN1L Missense_Mutation p.R162S 0.41 deleterious(0.04) possibly_damaging(0.685) TCGA-95-7567-01 5 112915284 112915284 G T YTHDC2 Silent p.V1082V 0.19 TCGA-95-7567-01 5 112915285 112915285 G T YTHDC2 Missense_Mutation p.D1083Y 0.19 deleterious(0.04) possibly_damaging(0.547) TCGA-95-7567-01 5 120022249 120022249 A T PRR16 Missense_Mutation p.T231S 0.34 tolerated_low_confidence(0.3) benign(0) TCGA-95-7567-01 5 121187760 121187760 G T FTMT Silent p.P34P 0.42 TCGA-95-7567-01 5 121188390 121188390 C T FTMT 3'UTR 0.23 TCGA-95-7567-01 5 121799351 121799351 C A SNCAIP 3'UTR 0.40 TCGA-95-7567-01 5 126154676 126154677 CT - LMNB1 Frame_Shift_Del p.R336Sfs*23 0.22 TCGA-95-7567-01 5 127487078 127487079 - A SLC12A2 Frame_Shift_Ins p.P754Tfs*35 0.12 TCGA-95-7567-01 5 130535268 130535268 T G LYRM7 Missense_Mutation p.C97G 0.14 tolerated(0.07) possibly_damaging(0.526) TCGA-95-7567-01 5 131923333 131923333 A C RAD50 Missense_Mutation p.K279T 0.18 deleterious(0.01) possibly_damaging(0.557) TCGA-95-7567-01 5 132099497 132099497 G A SEPT8 Silent p.Y145Y 0.20 TCGA-95-7567-01 5 134143555 134143555 T C DDX46 Missense_Mutation p.V691A 0.22 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 5 134164459 134164459 A C DDX46 3'UTR 0.25 TCGA-95-7567-01 5 134724751 134724751 G T H2AFY Silent p.T11T 0.14 TCGA-95-7567-01 5 135692395 135692395 A G TRPC7 Silent p.S227S 0.44 TCGA-95-7567-01 5 136324131 136324131 T C SPOCK1 Missense_Mutation p.Y303C 0.22 deleterious(0.02) probably_damaging(1) TCGA-95-7567-01 5 139193933 139193933 C A PSD2 Silent p.R334R 0.26 TCGA-95-7567-01 5 140209641 140209641 T C PCDHA6 Silent p.G655G 0.08 TCGA-95-7567-01 5 140530476 140530476 C G PCDHB6 Missense_Mutation p.A213G 0.24 deleterious(0) probably_damaging(0.998) TCGA-95-7567-01 5 140559312 140559312 T A PCDHB8 Missense_Mutation p.L566Q 0.07 deleterious_low_confidence(0) possibly_damaging(0.802) TCGA-95-7567-01 5 140870009 140870009 A T PCDHGC5 Missense_Mutation p.E401V 0.24 tolerated(0.08) possibly_damaging(0.867) TCGA-95-7567-01 5 141993670 141993670 G A FGF1 Missense_Mutation p.T8I 0.17 tolerated(0.08) possibly_damaging(0.607) TCGA-95-7567-01 5 145465023 145465023 C T PLAC8L1 Splice_Site p.X131_splice 0.33 TCGA-95-7567-01 5 14749341 14749341 A G ANKH Silent p.S254S 0.06 TCGA-95-7567-01 5 148748059 148748059 C G PCYOX1L Missense_Mutation p.L443V 0.23 tolerated(0.07) probably_damaging(0.985) TCGA-95-7567-01 5 149361207 149361207 C T SLC26A2 Missense_Mutation p.A684V 0.15 deleterious(0.01) possibly_damaging(0.802) TCGA-95-7567-01 5 159344042 159344042 A G ADRA1B Missense_Mutation p.R44G 0.19 deleterious(0) possibly_damaging(0.82) TCGA-95-7567-01 5 159797634 159797635 - G C1QTNF2 Frame_Shift_Ins p.L4Pfs*14 0.21 TCGA-95-7567-01 5 161128731 161128731 A T GABRA6 Silent p.V438V 0.21 TCGA-95-7567-01 5 169145738 169145738 T C DOCK2 Missense_Mutation p.L737P 0.12 deleterious(0) probably_damaging(0.971) TCGA-95-7567-01 5 169472840 169472840 T C DOCK2 Silent p.S1299S 0.28 TCGA-95-7567-01 5 169805721 169805721 G C KCNMB1 Missense_Mutation p.A188G 0.23 deleterious(0.03) probably_damaging(0.961) TCGA-95-7567-01 5 171765970 171765970 C A SH3PXD2B Silent p.T713T 0.32 TCGA-95-7567-01 5 171777413 171777413 G A SH3PXD2B Silent p.D322D 0.09 TCGA-95-7567-01 5 174869318 174869318 A T DRD1 Missense_Mutation p.M262K 0.31 tolerated(0.25) possibly_damaging(0.497) TCGA-95-7567-01 5 175717418 175717418 A G SIMC1 Intron 0.20 TCGA-95-7567-01 5 176022715 176022715 C A CDHR2 3'UTR 0.23 TCGA-95-7567-01 5 1879636 1879636 T C IRX4 Missense_Mutation p.K240E 0.31 tolerated(0.11) benign(0.075) TCGA-95-7567-01 5 24487723 24487723 G T CDH10 3'UTR 0.21 TCGA-95-7567-01 5 24505254 24505254 A G CDH10 Missense_Mutation p.W454R 0.15 deleterious(0.01) benign(0.29) TCGA-95-7567-01 5 33561216 33561216 G C ADAMTS12 Missense_Mutation p.D1347E 0.14 deleterious(0.01) probably_damaging(0.958) TCGA-95-7567-01 5 36249757 36249757 C A RANBP3L Nonstop_Mutation p.*491Lext*25 0.20 TCGA-95-7567-01 5 37183684 37183685 - T C5orf42 Frame_Shift_Ins p.N1533Kfs*12 0.22 TCGA-95-7567-01 5 37816117 37816117 C A GDNF Missense_Mutation p.R108L 0.12 deleterious(0.01) probably_damaging(0.987) TCGA-95-7567-01 5 38950335 38950335 T C RICTOR Silent p.V1205V 0.24 TCGA-95-7567-01 5 43490815 43490815 T C C5orf34 Missense_Mutation p.T533A 0.19 deleterious(0.03) benign(0.167) TCGA-95-7567-01 5 45267329 45267329 G T HCN1 Missense_Mutation p.R549S 0.24 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 5 54563598 54563598 C A DHX29 Missense_Mutation p.G1116V 0.18 deleterious(0) possibly_damaging(0.906) TCGA-95-7567-01 5 55185898 55185898 C T IL31RA Missense_Mutation p.A236V 0.11 tolerated(0.9) benign(0.006) TCGA-95-7567-01 5 56171006 56171006 A T MAP3K1 Missense_Mutation p.S612C 0.22 deleterious(0.02) benign(0.315) TCGA-95-7567-01 5 59982868 59982869 - T DEPDC1B Frame_Shift_Ins p.F79Ifs*8 0.24 TCGA-95-7567-01 5 63256362 63256362 A G HTR1A Silent p.L395L 0.18 TCGA-95-7567-01 5 6607459 6607460 CT - NSUN2 Frame_Shift_Del p.Q454Pfs*16 0.18 TCGA-95-7567-01 5 666182 666182 A T TPPP Missense_Mutation p.L123H 0.12 deleterious(0) probably_damaging(0.998) TCGA-95-7567-01 5 71756480 71756480 C A ZNF366 Missense_Mutation p.A282S 0.15 tolerated(0.37) probably_damaging(0.996) TCGA-95-7567-01 5 75427613 75427613 A C SV2C Missense_Mutation p.K13T 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.511) TCGA-95-7567-01 5 76326698 76326698 T C AGGF1 Missense_Mutation p.L36P 0.26 deleterious(0) probably_damaging(0.995) TCGA-95-7567-01 5 78181601 78181601 T A ARSB Silent p.G316G 0.25 TCGA-95-7567-01 5 80497209 80497209 C T RASGRF2 Nonsense_Mutation p.R952* 0.25 TCGA-95-7567-01 5 80521611 80521611 T A RASGRF2 3'UTR 0.32 TCGA-95-7567-01 5 92923832 92923832 C T NR2F1 Missense_Mutation p.R225C 0.14 deleterious(0) probably_damaging(0.996) TCGA-95-7567-01 6 101049771 101049771 C T ASCC3 Missense_Mutation p.A1740T 0.26 deleterious(0.01) benign(0.115) TCGA-95-7567-01 6 110533348 110533348 A G CDC40 Missense_Mutation p.Y247C 0.26 tolerated(0.09) benign(0.035) TCGA-95-7567-01 6 114279863 114279863 C A HDAC2 Missense_Mutation p.R78L 0.27 deleterious(0.01) benign(0.118) TCGA-95-7567-01 6 127836062 127836062 T C SOGA3 Missense_Mutation p.Y411C 0.07 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 6 129835636 129835636 G A LAMA2 Missense_Mutation p.R3036H 0.07 tolerated(0.16) benign(0.026) TCGA-95-7567-01 6 130530745 130530745 T C SAMD3 Missense_Mutation p.D93G 0.43 tolerated_low_confidence(0.19) benign(0.003) TCGA-95-7567-01 6 132029785 132029786 - A CTAGE9 3'UTR 0.16 TCGA-95-7567-01 6 13283761 13283761 T C TBC1D7 Intron 0.36 TCGA-95-7567-01 6 142539636 142539636 G A VTA1 Silent p.G260G 0.30 TCGA-95-7567-01 6 146870795 146870795 A G RAB32 Missense_Mutation p.K149R 0.15 tolerated(0.25) benign(0.014) TCGA-95-7567-01 6 147635025 147635025 C A STXBP5 Missense_Mutation p.P384H 0.25 deleterious(0) probably_damaging(0.961) TCGA-95-7567-01 6 148869642 148869642 T G SASH1 Missense_Mutation p.L1231R 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-95-7567-01 6 155465914 155465914 T C TIAM2 Splice_Site p.X601_splice 0.16 TCGA-95-7567-01 6 160238159 160238159 A G PNLDC1 Missense_Mutation p.H367R 0.11 deleterious(0) probably_damaging(0.996) TCGA-95-7567-01 6 160999570 160999570 C A LPA Missense_Mutation p.A1486S 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-95-7567-01 6 161519335 161519335 C T MAP3K4 Missense_Mutation p.R1184W 0.19 deleterious(0) possibly_damaging(0.816) TCGA-95-7567-01 6 162206910 162206910 G A PARK2 Silent p.S255S 0.22 TCGA-95-7567-01 6 16326806 16326806 A G ATXN1 Missense_Mutation p.I579T 0.20 deleterious(0) probably_damaging(0.988) TCGA-95-7567-01 6 27792113 27792113 G A HIST1H4J Missense_Mutation p.V71M 0.10 deleterious(0.02) probably_damaging(0.95) TCGA-95-7567-01 6 28293832 28293832 T A ZSCAN31 3'UTR 0.19 TCGA-95-7567-01 6 28473527 28473527 C A GPX6 Missense_Mutation p.G138W 0.06 deleterious(0.03) probably_damaging(1) TCGA-95-7567-01 6 29012595 29012595 A G OR2W1 Missense_Mutation p.Y120H 0.07 deleterious(0) probably_damaging(0.945) TCGA-95-7567-01 6 29795563 29795563 G T HLA-G 5'UTR 0.55 TCGA-95-7567-01 6 30553956 30553956 C T ABCF1 Nonsense_Mutation p.R587* 0.20 TCGA-95-7567-01 6 3129350 3129350 A T BPHL Silent p.A150A 0.61 TCGA-95-7567-01 6 31777849 31777849 C T HSPA1L Missense_Mutation p.G634D 0.07 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-95-7567-01 6 31939953 31939953 C A STK19 Silent p.I60I 0.30 TCGA-95-7567-01 6 3225815 3225815 T C TUBB2B Missense_Mutation p.M170V 0.11 tolerated_low_confidence(1) benign(0.001) TCGA-95-7567-01 6 38690788 38690788 A G DNAH8 5'Flank 0.57 TCGA-95-7567-01 6 38885823 38885824 - A DNAH8 Frame_Shift_Ins p.V3263Sfs*23 0.16 TCGA-95-7567-01 6 39873950 39873950 A G MOCS1 3'UTR 0.12 TCGA-95-7567-01 6 40400486 40400486 G T LRFN2 Missense_Mutation p.L123M 0.63 tolerated(0.22) possibly_damaging(0.774) TCGA-95-7567-01 6 43496605 43496605 T C XPO5 Silent p.V912V 0.15 TCGA-95-7567-01 6 46836805 46836805 G A GPR116 Missense_Mutation p.P479L 0.47 tolerated(0.18) benign(0.007) TCGA-95-7567-01 6 47681570 47681570 G A GPR115 Missense_Mutation p.A197T 0.56 tolerated(0.18) benign(0.006) TCGA-95-7567-01 6 49696400 49696400 C G CRISP3 3'UTR 0.04 TCGA-95-7567-01 6 49753867 49753867 C A PGK2 Missense_Mutation p.W345L 0.49 deleterious(0.04) benign(0.249) TCGA-95-7567-01 6 49754423 49754423 C A PGK2 Missense_Mutation p.V160F 0.15 deleterious(0) probably_damaging(0.967) TCGA-95-7567-01 6 52992867 52992867 A C GCM1 3'UTR 0.25 TCGA-95-7567-01 6 55113517 55113517 C A HCRTR2 Missense_Mutation p.L102I 0.25 deleterious(0.01) probably_damaging(0.99) TCGA-95-7567-01 6 56371299 56371299 C A DST Missense_Mutation p.R3846L 0.19 probably_damaging(0.999) TCGA-95-7567-01 6 56400064 56400064 C A DST Missense_Mutation p.Q2976H 0.27 benign(0.061) TCGA-95-7567-01 6 576801 576801 G A EXOC2 Missense_Mutation p.A425V 0.12 tolerated(0.16) probably_damaging(0.939) TCGA-95-7567-01 6 80910666 80910666 T A BCKDHB Missense_Mutation p.I253K 0.11 tolerated(0.24) benign(0.001) TCGA-95-7567-01 6 82927845 82927845 A T IBTK Missense_Mutation p.W420R 0.47 deleterious(0) probably_damaging(1) TCGA-95-7567-01 6 84108163 84108163 C T ME1 Silent p.E95E 0.09 TCGA-95-7567-01 6 87970954 87970954 A G ZNF292 Missense_Mutation p.E2536G 0.10 deleterious(0.01) benign(0.24) TCGA-95-7567-01 6 96651162 96651162 C T FUT9 Missense_Mutation p.A44V 0.09 tolerated(0.37) benign(0.012) TCGA-95-7567-01 7 100345264 100345264 G A ZAN Silent p.Q341Q 0.16 TCGA-95-7567-01 7 100696690 100696691 - A MUC17 Frame_Shift_Ins p.N4447Kfs*5 0.23 TCGA-95-7567-01 7 101747700 101747700 A T CUX1 Missense_Mutation p.K175M 0.20 deleterious(0.01) unknown(0) TCGA-95-7567-01 7 101755043 101755043 G A CUX1 Missense_Mutation p.S210N 0.14 deleterious(0.02) unknown(0) TCGA-95-7567-01 7 103276722 103276722 G A RELN Missense_Mutation p.R755C 0.19 deleterious(0) probably_damaging(0.997) TCGA-95-7567-01 7 105142882 105142882 T C PUS7 Missense_Mutation p.K239E 0.17 tolerated(0.11) benign(0.015) TCGA-95-7567-01 7 110762813 110762813 G A LRRN3 5'UTR 0.20 TCGA-95-7567-01 7 121650420 121650420 C T PTPRZ1 Silent p.G440G 0.15 TCGA-95-7567-01 7 122338851 122338851 T A RNF133 Missense_Mutation p.Y41F 0.06 tolerated(0.06) benign(0.005) TCGA-95-7567-01 7 127721958 127721958 T C SND1 Intron 0.21 TCGA-95-7567-01 7 128486101 128486101 C T FLNC Missense_Mutation p.T1283I 0.25 tolerated(0.15) benign(0.003) TCGA-95-7567-01 7 129394889 129394889 G C NRF1 Missense_Mutation p.Q460H 0.21 tolerated(0.11) probably_damaging(0.999) TCGA-95-7567-01 7 135286203 135286203 C G NUP205 Silent p.L820L 0.25 TCGA-95-7567-01 7 135376328 135376328 G A SLC13A4 Missense_Mutation p.A429V 0.12 deleterious(0.01) benign(0.272) TCGA-95-7567-01 7 138269730 138269731 - T TRIM24 3'UTR 0.20 TCGA-95-7567-01 7 138555917 138555917 T C KIAA1549 Missense_Mutation p.K1513E 0.13 deleterious(0) probably_damaging(0.999) TCGA-95-7567-01 7 138603198 138603198 C T KIAA1549 Missense_Mutation p.E392K 0.06 tolerated(0.31) benign(0.018) TCGA-95-7567-01 7 140706247 140706247 C A MRPS33 Missense_Mutation p.A102S 0.24 tolerated(0.33) unknown(0) TCGA-95-7567-01 7 142206515 142206515 C A TRBV10-2 Nonsense_Mutation p.E114* 0.19 TCGA-95-7567-01 7 142250913 142250913 T A TRBV6-4 Missense_Mutation p.D45V 0.09 deleterious(0) possibly_damaging(0.85) TCGA-95-7567-01 7 142480049 142480049 G A PRSS3P2 RNA 0.15 TCGA-95-7567-01 7 142499806 142499806 G T TRBC2 Missense_Mutation p.V142F 0.11 deleterious(0.02) possibly_damaging(0.847) TCGA-95-7567-01 7 142724022 142724022 A T OR9A2 Silent p.S66S 0.16 TCGA-95-7567-01 7 143028329 143028329 C A CLCN1 Silent p.T328T 0.31 TCGA-95-7567-01 7 143079711 143079711 A T ZYX Missense_Mutation p.D145V 0.09 deleterious(0) unknown(0) TCGA-95-7567-01 7 143792215 143792215 G T OR2A12 Missense_Mutation p.Q5H 0.28 tolerated(0.05) benign(0.005) TCGA-95-7567-01 7 143884172 143884172 A C ARHGEF35 Silent p.T435T 0.09 TCGA-95-7567-01 7 147183130 147183130 A G CNTNAP2 Missense_Mutation p.N592D 0.16 tolerated(0.28) benign(0.005) TCGA-95-7567-01 7 148311279 148311279 G C C7orf33 Missense_Mutation p.R117T 0.26 deleterious_low_confidence(0) benign(0.402) TCGA-95-7567-01 7 149129388 149129388 T C ZNF777 Missense_Mutation p.T659A 0.12 tolerated(0.09) benign(0.019) TCGA-95-7567-01 7 149474866 149474866 C T ZNF467 5'Flank 0.31 TCGA-95-7567-01 7 150325462 150325462 A G GIMAP6 Missense_Mutation p.V75A 0.20 deleterious(0) probably_damaging(1) TCGA-95-7567-01 7 150921105 150921105 C A ABCF2 Missense_Mutation p.D155Y 0.21 deleterious(0.02) benign(0.045) TCGA-95-7567-01 7 156798491 156798491 G A MNX1 Missense_Mutation p.A310V 0.08 deleterious(0.03) probably_damaging(0.939) TCGA-95-7567-01 7 158552753 158552753 T A ESYT2 Missense_Mutation p.D488V 0.26 deleterious(0) benign(0.271) TCGA-95-7567-01 7 16744220 16744220 A G BZW2 Missense_Mutation p.H386R 0.22 deleterious(0.01) probably_damaging(0.966) TCGA-95-7567-01 7 18066925 18066925 C G PRPS1L1 Missense_Mutation p.E161Q 0.27 tolerated(0.14) benign(0.005) TCGA-95-7567-01 7 19184928 19184928 G T FERD3L Missense_Mutation p.L20M 0.12 deleterious(0.05) possibly_damaging(0.472) TCGA-95-7567-01 7 20420306 20420306 G C ITGB8 Missense_Mutation p.C218S 0.13 deleterious(0) probably_damaging(1) TCGA-95-7567-01 7 23775246 23775246 G T STK31 Missense_Mutation p.Q191H 0.07 deleterious(0.03) benign(0.274) TCGA-95-7567-01 7 23809301 23809301 G A STK31 Missense_Mutation p.A547T 0.40 tolerated(0.46) benign(0) TCGA-95-7567-01 7 24727207 24727207 T C MPP6 Missense_Mutation p.W533R 0.22 deleterious(0) probably_damaging(1) TCGA-95-7567-01 7 2565886 2565886 A G LFNG Missense_Mutation p.H277R 0.43 tolerated(0.59) benign(0.03) TCGA-95-7567-01 7 42005962 42005962 C A GLI3 Silent p.S903S 0.18 TCGA-95-7567-01 7 44005532 44005532 A G RP5-1165K10.2 RNA 0.31 TCGA-95-7567-01 7 44579292 44579292 G T NPC1L1 Missense_Mutation p.P235H 0.13 deleterious(0) probably_damaging(0.974) TCGA-95-7567-01 7 45011817 45011817 C A MYO1G Missense_Mutation p.R209I 0.08 tolerated(0.41) probably_damaging(0.912) TCGA-95-7567-01 7 45223044 45223044 G A RAMP3 3'UTR 0.15 TCGA-95-7567-01 7 48080957 48080957 C T C7orf57 Missense_Mutation p.R28C 0.11 deleterious(0.01) probably_damaging(0.959) TCGA-95-7567-01 7 48349667 48349667 C A ABCA13 Missense_Mutation p.P3149T 0.43 probably_damaging(0.953) TCGA-95-7567-01 7 5265457 5265457 C T WIPI2 Silent p.C248C 0.50 TCGA-95-7567-01 7 5568949 5568949 T C ACTB Missense_Mutation p.Y69C 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-95-7567-01 7 57528486 57528486 C A ZNF716 Missense_Mutation p.L107I 0.14 deleterious(0) probably_damaging(0.996) TCGA-95-7567-01 7 57529293 57529293 G C ZNF716 Missense_Mutation p.G376R 0.16 deleterious(0.03) probably_damaging(0.953) TCGA-95-7567-01 7 57529294 57529294 G T ZNF716 Missense_Mutation p.G376V 0.18 deleterious(0) probably_damaging(0.965) TCGA-95-7567-01 7 5769176 5769176 G A RNF216 Missense_Mutation p.R426C 0.15 deleterious(0) possibly_damaging(0.785) TCGA-95-7567-01 7 72717935 72717935 C T NSUN5 Missense_Mutation p.A345T 0.22 deleterious(0) probably_damaging(0.993) TCGA-95-7567-01 7 769461 769461 C T HEATR2 Nonsense_Mutation p.R253* 0.16 TCGA-95-7567-01 7 82585510 82585510 T A PCLO Missense_Mutation p.S1587C 0.20 unknown(0) TCGA-95-7567-01 7 82763648 82763648 G T PCLO Missense_Mutation p.P1073H 0.18 unknown(0) TCGA-95-7567-01 7 87195421 87195421 G T ABCB1 Missense_Mutation p.P223T 0.17 deleterious(0) probably_damaging(0.992) TCGA-95-7567-01 7 92020624 92020624 G C ANKIB1 Missense_Mutation p.A733P 0.24 deleterious(0.02) probably_damaging(0.947) TCGA-95-7567-01 7 92762906 92762906 C T SAMD9L Silent p.Q793Q 0.20 TCGA-95-7567-01 7 93098038 93098038 G T CALCR Missense_Mutation p.F188L 0.63 deleterious(0.03) possibly_damaging(0.742) TCGA-95-7567-01 7 93108766 93108766 C T CALCR Silent p.E53E 0.15 TCGA-95-7567-01 7 93108804 93108804 G T CALCR Missense_Mutation p.L41I 0.19 tolerated(0.06) benign(0.276) TCGA-95-7567-01 7 97862899 97862899 C T TECPR1 Silent p.S502S 0.20 TCGA-95-7567-01 7 98543387 98543387 C T TRRAP Silent p.C1497C 0.19 TCGA-95-7567-01 8 100712139 100712139 A G VPS13B Missense_Mutation p.K2170E 0.27 tolerated(0.12) possibly_damaging(0.636) TCGA-95-7567-01 8 100844718 100844718 A G VPS13B Missense_Mutation p.D3176G 0.27 tolerated(0.13) possibly_damaging(0.539) TCGA-95-7567-01 8 100844812 100844812 A G VPS13B Silent p.R3207R 0.19 TCGA-95-7567-01 8 103273473 103273473 A G UBR5 Silent p.P2619P 0.16 TCGA-95-7567-01 8 10470481 10470481 A G RP1L1 Missense_Mutation p.F376S 0.07 benign(0.043) TCGA-95-7567-01 8 10583693 10583693 G A SOX7 Missense_Mutation p.P293L 0.13 tolerated(0.09) benign(0.126) TCGA-95-7567-01 8 106456593 106456593 C A ZFPM2 Missense_Mutation p.D95E 0.38 tolerated(1) benign(0.001) TCGA-95-7567-01 8 106813864 106813864 T A ZFPM2 Silent p.A518A 0.20 TCGA-95-7567-01 8 10756150 10756150 C T XKR6 Nonsense_Mutation p.W413* 0.21 TCGA-95-7567-01 8 109241348 109241348 T C EIF3E Missense_Mutation p.D183G 0.17 deleterious(0.05) benign(0.001) TCGA-95-7567-01 8 113299373 113299373 G T CSMD3 Missense_Mutation p.T3084N 0.57 tolerated(0.38) benign(0.063) TCGA-95-7567-01 8 113301759 113301759 A T CSMD3 Missense_Mutation p.C2995S 0.26 deleterious(0) probably_damaging(0.932) TCGA-95-7567-01 8 113304920 113304920 A T CSMD3 Silent p.P2878P 0.29 TCGA-95-7567-01 8 113418912 113418912 G C CSMD3 Missense_Mutation p.P1884A 0.49 deleterious(0.01) probably_damaging(0.983) TCGA-95-7567-01 8 113657345 113657345 A T CSMD3 Missense_Mutation p.H1101Q 0.18 deleterious(0.04) benign(0.309) TCGA-95-7567-01 8 113678554 113678554 C T CSMD3 Nonsense_Mutation p.W923* 0.21 TCGA-95-7567-01 8 11421475 11421475 C T BLK Missense_Mutation p.T459I 0.18 deleterious(0.04) benign(0.111) TCGA-95-7567-01 8 116631829 116631829 C A TRPS1 Missense_Mutation p.D166Y 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.698) TCGA-95-7567-01 8 12040085 12040085 A G FAM86B1 3'UTR 0.25 TCGA-95-7567-01 8 124250158 124250158 A G C8orf76 Silent p.S79S 0.17 TCGA-95-7567-01 8 124266208 124266208 C A ZHX1 Missense_Mutation p.S660I 0.13 tolerated(0.08) benign(0.019) TCGA-95-7567-01 8 133192474 133192474 C T KCNQ3 Missense_Mutation p.R236H 0.34 deleterious(0) probably_damaging(0.995) TCGA-95-7567-01 8 139620214 139620214 C T COL22A1 Missense_Mutation p.G1333R 0.13 unknown(0) TCGA-95-7567-01 8 144995924 144995924 G A PLEC Missense_Mutation p.R2826C 0.13 benign(0.21) TCGA-95-7567-01 8 163605 163605 G A RPL23AP53 RNA 0.20 TCGA-95-7567-01 8 17823602 17823602 C A PCM1 Missense_Mutation p.L984I 0.13 tolerated(0.09) possibly_damaging(0.876) TCGA-95-7567-01 8 17823622 17823622 C G PCM1 Silent p.L990L 0.28 TCGA-95-7567-01 8 2041800 2041800 C T MYOM2 Silent p.F669F 0.13 TCGA-95-7567-01 8 2063832 2063832 C A MYOM2 Silent p.T1087T 0.09 TCGA-95-7567-01 8 21859696 21859696 T A XPO7 Silent p.R952R 0.36 TCGA-95-7567-01 8 24776003 24776003 G A NEFM Missense_Mutation p.V879I 0.09 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-95-7567-01 8 2857501 2857501 C A CSMD1 Nonsense_Mutation p.G2728* 0.27 TCGA-95-7567-01 8 2967841 2967841 G T CSMD1 Missense_Mutation p.N2149K 0.36 probably_damaging(0.999) TCGA-95-7567-01 8 3046418 3046418 C T CSMD1 Silent p.S1838S 0.30 TCGA-95-7567-01 8 37794833 37794833 G C GOT1L1 Missense_Mutation p.L161V 0.45 tolerated(0.13) possibly_damaging(0.874) TCGA-95-7567-01 8 51617225 51617225 G A SNTG1 Silent p.L368L 0.41 TCGA-95-7567-01 8 52359577 52359577 A G PXDNL Silent p.T504T 0.21 TCGA-95-7567-01 8 54742088 54742088 A G ATP6V1H Silent p.A74A 0.09 TCGA-95-7567-01 8 56715024 56715024 A G TGS1 Missense_Mutation p.K620E 0.07 tolerated(0.45) benign(0.005) TCGA-95-7567-01 8 62212685 62212685 A G CLVS1 Missense_Mutation p.Y100C 0.08 deleterious(0) probably_damaging(0.91) TCGA-95-7567-01 8 63492148 63492148 G T NKAIN3 Silent p.A35A 0.33 TCGA-95-7567-01 8 68062151 68062151 T G CSPP1 Missense_Mutation p.D698E 0.28 tolerated(0.68) probably_damaging(0.991) TCGA-95-7567-01 8 72756272 72756272 C A MSC Nonsense_Mutation p.E48* 0.21 TCGA-95-7567-01 8 73480526 73480526 C A KCNB2 Missense_Mutation p.P186H 0.09 deleterious(0) probably_damaging(0.966) TCGA-95-7567-01 8 76470886 76470886 A T HNF4G Silent p.A279A 0.12 TCGA-95-7567-01 8 77617020 77617020 C G ZFHX4 Missense_Mutation p.R233G 0.23 benign(0.433) TCGA-95-7567-01 8 77765790 77765790 G C ZFHX4 Missense_Mutation p.Q2211H 0.14 probably_damaging(0.979) TCGA-95-7567-01 8 77766839 77766839 C A ZFHX4 Missense_Mutation p.P2561H 0.18 probably_damaging(0.927) TCGA-95-7567-01 8 77768303 77768303 A G ZFHX4 Missense_Mutation p.Y3049C 0.10 benign(0.421) TCGA-95-7567-01 8 77775752 77775752 C A ZFHX4 Missense_Mutation p.P3268T 0.10 probably_damaging(0.996) TCGA-95-7567-01 8 87076615 87076615 T C PSKH2 Missense_Mutation p.E144G 0.22 deleterious(0.02) benign(0.35) TCGA-95-7567-01 8 90965679 90965679 T A NBN Missense_Mutation p.R546S 0.53 tolerated(0.72) benign(0.045) TCGA-95-7567-01 8 90976659 90976659 G A NBN Missense_Mutation p.P325S 0.22 deleterious(0) probably_damaging(0.998) TCGA-95-7567-01 8 94793932 94793932 A T TMEM67 Missense_Mutation p.N342I 0.24 deleterious(0) possibly_damaging(0.751) TCGA-95-7567-01 9 104314667 104314667 A G RNF20 Silent p.T511T 0.24 TCGA-95-7567-01 9 114538246 114538246 A G C9orf84 Silent p.I25I 0.17 TCGA-95-7567-01 9 115956435 115956435 T C FKBP15 Silent p.R293R 0.13 TCGA-95-7567-01 9 123580064 123580064 C G PSMD5 3'UTR 0.40 TCGA-95-7567-01 9 125617600 125617600 A C RC3H2 Missense_Mutation p.I893R 0.19 deleterious(0) probably_damaging(0.976) TCGA-95-7567-01 9 132396449 132396449 G A NTMT1 Silent p.T93T 0.12 TCGA-95-7567-01 9 133760409 133760409 G T ABL1 Missense_Mutation p.G930V 0.32 tolerated_low_confidence(0.26) probably_damaging(0.953) TCGA-95-7567-01 9 135187144 135187144 C T SETX Missense_Mutation p.V1792I 0.12 tolerated(0.26) benign(0.007) TCGA-95-7567-01 9 135864570 135864570 G A GFI1B Silent p.T211T 0.17 TCGA-95-7567-01 9 136412196 136412196 G A ADAMTSL2 Missense_Mutation p.G267D 0.16 deleterious(0) probably_damaging(0.996) TCGA-95-7567-01 9 138657025 138657025 C T KCNT1 Missense_Mutation p.A395V 0.17 deleterious(0.03) possibly_damaging(0.54) TCGA-95-7567-01 9 139395128 139395128 C T NOTCH1 Missense_Mutation p.R1937H 0.16 deleterious(0) probably_damaging(0.957) TCGA-95-7567-01 9 140057044 140057044 C T GRIN1 Silent p.G643G 0.17 TCGA-95-7567-01 9 140458994 140458994 C A DPH7 Missense_Mutation p.V281L 0.12 tolerated(0.05) benign(0.128) TCGA-95-7567-01 9 140693355 140693355 G A EHMT1 Missense_Mutation p.V866I 0.13 tolerated(0.55) benign(0.28) TCGA-95-7567-01 9 140919614 140919614 G T CACNA1B Silent p.T1092T 0.40 TCGA-95-7567-01 9 20912903 20912903 A G FOCAD Silent p.G919G 0.51 TCGA-95-7567-01 9 32542019 32542019 T C TOPORS Missense_Mutation p.N835S 0.09 tolerated(0.87) unknown(0) TCGA-95-7567-01 9 35044946 35044946 A G C9orf131 Missense_Mutation p.T774A 0.14 tolerated(0.23) benign(0.173) TCGA-95-7567-01 9 35682149 35682149 T C TPM2 Missense_Mutation p.S262G 0.34 tolerated(0.21) benign(0.029) TCGA-95-7567-01 9 43626696 43626696 C T SPATA31A6 Missense_Mutation p.C664Y 0.26 deleterious(0.03) probably_damaging(0.93) TCGA-95-7567-01 9 69112982 69112982 T C RP11-87H9.3 5'Flank 0.08 TCGA-95-7567-01 9 77397757 77397757 A G TRPM6 Missense_Mutation p.F978L 0.14 tolerated(0.15) probably_damaging(1) TCGA-95-7567-01 9 78771962 78771962 G T PCSK5 Silent p.V438V 0.22 TCGA-95-7567-01 9 78842447 78842447 C T PCSK5 Silent p.C885C 0.15 TCGA-95-7567-01 9 79898509 79898509 C T VPS13A Silent p.N1094N 0.22 TCGA-95-7567-01 9 79930204 79930204 A C VPS13A Missense_Mutation p.D1483A 0.17 tolerated(0.77) benign(0.146) TCGA-95-7567-01 9 8517921 8517921 G A PTPRD Silent p.V490V 0.20 TCGA-95-7567-01 9 86474140 86474140 C A KIF27 Missense_Mutation p.K1027N 0.08 deleterious(0) possibly_damaging(0.603) TCGA-95-7567-01 9 86920183 86920183 C A SLC28A3 Missense_Mutation p.G107V 0.11 deleterious(0.01) possibly_damaging(0.703) TCGA-95-7567-01 9 86920184 86920184 C A SLC28A3 Missense_Mutation p.G107C 0.11 deleterious(0.01) probably_damaging(0.928) TCGA-95-7567-01 9 91262457 91262457 C A RP13-60M5.2 RNA 0.14 TCGA-95-7567-01 9 91266874 91266874 A G RP13-60M5.2 Splice_Site 0.23 TCGA-95-7567-01 9 968124 968124 C A DMRT1 Silent p.I369I 0.32 TCGA-95-7567-01 9 98684621 98684621 A G ERCC6L2 Missense_Mutation p.Y456C 0.19 tolerated(0.16) benign(0.021) TCGA-95-7567-01 9 990347 990347 T A DMRT3 Missense_Mutation p.V254E 0.52 deleterious(0) probably_damaging(0.988) TCGA-95-7567-01 X 106033443 106033443 C T RNF128 Silent p.D305D 0.12 TCGA-95-7567-01 X 107412728 107412728 G A COL4A6 Nonsense_Mutation p.R1231* 0.46 TCGA-95-7567-01 X 120009217 120009217 G A CT47B1 Missense_Mutation p.A103V 0.46 tolerated(0.21) possibly_damaging(0.815) TCGA-95-7567-01 X 130215565 130215565 C A ARHGAP36 5'UTR 0.62 TCGA-95-7567-01 X 134991033 134991033 T G SAGE1 Missense_Mutation p.I484M 0.71 deleterious(0) benign(0.166) TCGA-95-7567-01 X 137821450 137821450 C A FGF13 Intron 0.71 TCGA-95-7567-01 X 138642967 138642967 C A F9 Missense_Mutation p.T264N 0.69 deleterious(0) probably_damaging(0.974) TCGA-95-7567-01 X 14039615 14039616 - A GEMIN8 5'UTR 0.32 TCGA-95-7567-01 X 142717407 142717407 G A SLITRK4 Silent p.N506N 0.20 TCGA-95-7567-01 X 142717510 142717510 A G SLITRK4 Missense_Mutation p.M472T 0.64 deleterious(0.05) benign(0.005) TCGA-95-7567-01 X 147084797 147084797 A C FMR1NB Missense_Mutation p.E118D 0.06 tolerated(0.13) benign(0.388) TCGA-95-7567-01 X 147743755 147743755 A G AFF2 Silent p.V169V 0.34 TCGA-95-7567-01 X 147891398 147891398 A G AFF2 Splice_Site p.X348_splice 0.12 TCGA-95-7567-01 X 148069036 148069036 C T AFF2 Missense_Mutation p.R1255W 0.31 deleterious(0) probably_damaging(0.996) TCGA-95-7567-01 X 152818579 152818579 C T ATP2B3 Missense_Mutation p.P637L 0.24 deleterious(0) probably_damaging(0.988) TCGA-95-7567-01 X 152826253 152826253 G A ATP2B3 Missense_Mutation p.A987T 0.09 deleterious(0) probably_damaging(1) TCGA-95-7567-01 X 153134138 153134138 A G L1CAM Missense_Mutation p.F475S 0.07 tolerated(0.54) possibly_damaging(0.491) TCGA-95-7567-01 X 16168617 16168617 C T GRPR Silent p.H201H 0.09 TCGA-95-7567-01 X 2773172 2773172 G A GYG2 Missense_Mutation p.A186T 0.41 deleterious(0.01) probably_damaging(0.995) TCGA-95-7567-01 X 29417281 29417281 A T IL1RAPL1 Missense_Mutation p.T187S 0.41 tolerated(0.78) benign(0) TCGA-95-7567-01 X 34961569 34961569 G T FAM47B Silent p.P207P 0.36 TCGA-95-7567-01 X 35820879 35820879 C G MAGEB16 Missense_Mutation p.T189S 0.50 deleterious(0.03) probably_damaging(1) TCGA-95-7567-01 X 38664362 38664362 G T MID1IP1 Nonsense_Mutation p.E55* 0.33 TCGA-95-7567-01 X 47272598 47272598 C A ZNF157 Missense_Mutation p.H376N 0.36 deleterious(0) probably_damaging(0.998) TCGA-95-7567-01 X 50051702 50051703 - A CCNB3 Frame_Shift_Ins p.C181Vfs*5 0.31 TCGA-95-7567-01 X 73061240 73061240 C A XIST RNA 0.33 TCGA-95-7567-01 X 77286968 77286968 T C ATP7A Missense_Mutation p.V1061A 0.16 deleterious(0) benign(0.114) TCGA-95-7567-01 X 79984377 79984377 C A BRWD3 Missense_Mutation p.K420N 0.38 tolerated(0.08) benign(0.074) TCGA-95-7567-01 X 84526120 84526120 G T ZNF711 Missense_Mutation p.M524I 0.52 tolerated(0.09) possibly_damaging(0.49) TCGA-95-7567-01 X 84526406 84526406 A C ZNF711 Missense_Mutation p.K620Q 0.11 tolerated(0.11) probably_damaging(1) TCGA-95-7567-01 X 89177480 89177480 C A TGIF2LX Silent p.A132A 0.41 TCGA-95-7567-01 X 99661862 99661862 G T PCDH19 Silent p.P578P 0.38 TCGA-95-7944-01 10 123325105 123325105 C T FGFR2 Missense_Mutation p.D75N 0.26 tolerated(0.13) probably_damaging(0.998) TCGA-95-7944-01 10 124391388 124391388 C G DMBT1 Missense_Mutation p.P1993A 0.25 tolerated(0.19) benign(0.006) TCGA-95-7944-01 10 283612 283612 C G ZMYND11 Missense_Mutation p.Q202E 0.36 tolerated(0.75) benign(0.217) TCGA-95-7944-01 10 332217 332217 C G DIP2C Missense_Mutation p.G1372A 0.22 deleterious(0) probably_damaging(0.999) TCGA-95-7944-01 10 37422886 37422886 A G ANKRD30A Missense_Mutation p.I164M 0.20 deleterious(0) possibly_damaging(0.902) TCGA-95-7944-01 10 51748695 51748695 G A AGAP6 Missense_Mutation p.E74K 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.899) TCGA-95-7944-01 10 6157423 6157423 T G RBM17 Silent p.V370V 0.04 TCGA-95-7944-01 10 73565679 73565679 C G CDH23 Missense_Mutation p.F423L 0.24 tolerated(0.59) benign(0.007) TCGA-95-7944-01 10 90773980 90773980 G A FAS Missense_Mutation p.E261K 0.24 deleterious(0.01) probably_damaging(0.961) TCGA-95-7944-01 10 91404806 91404806 C T PANK1 Missense_Mutation p.G85E 0.29 tolerated_low_confidence(0.22) benign(0.003) TCGA-95-7944-01 11 101761986 101761986 C A ANGPTL5 3'UTR 0.11 TCGA-95-7944-01 11 106647213 106647213 C T GUCY1A2 Missense_Mutation p.M596I 0.20 deleterious(0) possibly_damaging(0.876) TCGA-95-7944-01 11 107663347 107663347 G A SLC35F2 Silent p.V373V 0.12 TCGA-95-7944-01 11 111166827 111166827 C T COLCA1 3'UTR 0.09 TCGA-95-7944-01 11 124618657 124618657 C T VSIG2 Missense_Mutation p.E197K 0.13 tolerated(0.15) possibly_damaging(0.705) TCGA-95-7944-01 11 4510866 4510866 C G OR52K1 Missense_Mutation p.H246D 0.17 deleterious(0) probably_damaging(1) TCGA-95-7944-01 11 46563784 46563784 C T AMBRA1 Missense_Mutation p.E505K 0.07 tolerated_low_confidence(0.06) probably_damaging(0.956) TCGA-95-7944-01 11 47380517 47380517 A G SPI1 Missense_Mutation p.L125P 0.24 tolerated(0.24) probably_damaging(0.998) TCGA-95-7944-01 11 55340491 55340491 G C OR4C16 Missense_Mutation p.M296I 0.27 tolerated(0.08) benign(0.378) TCGA-95-7944-01 11 57235412 57235412 C T RTN4RL2 Missense_Mutation p.S121L 0.24 tolerated(0.08) benign(0.316) TCGA-95-7944-01 11 57310245 57310245 G A SMTNL1 Missense_Mutation p.E62K 0.12 deleterious_low_confidence(0.03) possibly_damaging(0.53) TCGA-95-7944-01 11 58723297 58723297 G T GLYATL1 Nonsense_Mutation p.E267* 0.23 TCGA-95-7944-01 11 65629679 65629679 C T MUS81 Intron 0.11 TCGA-95-7944-01 11 66444488 66444488 G C RBM4B Silent p.L21L 0.17 TCGA-95-7944-01 11 68530098 68530098 C G CPT1A Missense_Mutation p.Q624H 0.17 tolerated(0.19) benign(0.01) TCGA-95-7944-01 11 6891559 6891559 C G OR10A2 Missense_Mutation p.L192V 0.25 tolerated(0.15) benign(0.118) TCGA-95-7944-01 11 6891879 6891879 C T OR10A2 Silent p.L298L 0.07 TCGA-95-7944-01 12 112143554 112143554 G A ACAD10 Missense_Mutation p.V117M 0.04 tolerated(0.09) possibly_damaging(0.632) TCGA-95-7944-01 12 121013751 121013751 C T RNF10 Missense_Mutation p.S786F 0.18 deleterious(0.03) possibly_damaging(0.56) TCGA-95-7944-01 12 124203189 124203189 C G ATP6V0A2 Missense_Mutation p.S46C 0.18 deleterious(0.01) benign(0.016) TCGA-95-7944-01 12 131471786 131471786 G C GPR133 Missense_Mutation p.E213Q 0.14 tolerated_low_confidence(0.09) benign(0.183) TCGA-95-7944-01 12 23687272 23687272 C T SOX5 Missense_Mutation p.E725K 0.19 tolerated(0.14) probably_damaging(0.991) TCGA-95-7944-01 12 26218195 26218195 G C RASSF8 Missense_Mutation p.E290Q 0.23 tolerated(0.07) benign(0.004) TCGA-95-7944-01 12 32138464 32138464 G A KIAA1551 Silent p.Q1525Q 0.15 TCGA-95-7944-01 12 33560264 33560264 C T SYT10 Silent p.P179P 0.19 TCGA-95-7944-01 12 39124087 39124087 C G CPNE8 Missense_Mutation p.E266Q 0.27 tolerated(0.07) probably_damaging(0.934) TCGA-95-7944-01 12 4721836 4721836 G A DYRK4 Missense_Mutation p.E425K 0.17 tolerated(0.11) benign(0.004) TCGA-95-7944-01 12 53497988 53497988 G T SOAT2 Nonsense_Mutation p.E46* 0.18 TCGA-95-7944-01 12 54369146 54369146 G C HOXC11 Missense_Mutation p.K288N 0.27 deleterious(0) probably_damaging(0.999) TCGA-95-7944-01 12 55356284 55356284 C G TESPA1 Missense_Mutation p.Q466H 0.16 deleterious_low_confidence(0.04) benign(0.005) TCGA-95-7944-01 12 56493520 56493520 G A ERBB3 Silent p.L976L 0.25 TCGA-95-7944-01 12 56629424 56629424 C T SLC39A5 Silent p.L295L 0.17 TCGA-95-7944-01 12 88570062 88570062 G A TMTC3 Silent p.L466L 0.26 TCGA-95-7944-01 12 93131216 93131216 G A PLEKHG7 5'UTR 0.14 TCGA-95-7944-01 12 9322029 9322029 G C PZP Silent p.L666L 0.14 TCGA-95-7944-01 13 111340150 111340150 C G CARS2 Silent p.L163L 0.17 TCGA-95-7944-01 13 38213416 38213416 C G TRPC4 Missense_Mutation p.L705F 0.22 deleterious(0.03) benign(0.16) TCGA-95-7944-01 13 38237709 38237709 C T TRPC4 Missense_Mutation p.R511K 0.22 deleterious(0) possibly_damaging(0.833) TCGA-95-7944-01 13 76100707 76100707 C T COMMD6 3'UTR 0.12 TCGA-95-7944-01 14 103596137 103596137 C T TNFAIP2 Silent p.L307L 0.32 TCGA-95-7944-01 14 51132059 51132059 C A SAV1 Nonsense_Mutation p.E125* 0.20 TCGA-95-7944-01 14 94395253 94395253 G A FAM181A Missense_Mutation p.V270I 0.08 deleterious(0.05) benign(0.016) TCGA-95-7944-01 15 101115203 101115203 G A LINS Missense_Mutation p.S207L 0.12 tolerated(0.53) benign(0.094) TCGA-95-7944-01 15 101845511 101845511 C T PCSK6 Silent p.R953R 0.15 TCGA-95-7944-01 15 27128310 27128310 C T GABRA5 Intron 0.22 TCGA-95-7944-01 15 28511033 28511033 G A HERC2 Silent p.Y562Y 0.13 TCGA-95-7944-01 15 32988853 32988853 C G SCG5 3'UTR 0.17 TCGA-95-7944-01 15 34657815 34657815 G A LPCAT4 Nonsense_Mutation p.Q68* 0.20 TCGA-95-7944-01 15 35085666 35085666 G A ACTC1 Silent p.I78I 0.16 TCGA-95-7944-01 15 44105285 44105285 C A MFAP1 Missense_Mutation p.D263Y 0.04 deleterious(0.03) probably_damaging(0.926) TCGA-95-7944-01 15 44943789 44943789 G A SPG11 Silent p.L452L 0.14 TCGA-95-7944-01 15 53908079 53908079 G C WDR72 Missense_Mutation p.S775C 0.14 deleterious(0.02) probably_damaging(0.928) TCGA-95-7944-01 15 56208071 56208071 G A NEDD4 Missense_Mutation p.S320L 0.15 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-95-7944-01 15 62995024 62995024 G C TLN2 Silent p.L655L 0.19 TCGA-95-7944-01 15 69018214 69018214 G C CORO2B Missense_Mutation p.E448D 0.17 deleterious(0.04) probably_damaging(0.983) TCGA-95-7944-01 15 76995253 76995253 C T SCAPER Missense_Mutation p.D780N 0.21 deleterious(0) possibly_damaging(0.746) TCGA-95-7944-01 15 78921930 78921930 G A CHRNB4 Silent p.L239L 0.15 TCGA-95-7944-01 15 79294070 79294070 C T RASGRF1 Missense_Mutation p.D853N 0.16 tolerated(0.17) benign(0.003) TCGA-95-7944-01 15 79350718 79350718 C A RASGRF1 Missense_Mutation p.Q163H 0.19 deleterious(0.05) probably_damaging(0.99) TCGA-95-7944-01 15 79350750 79350750 C G RASGRF1 Missense_Mutation p.E153Q 0.16 deleterious(0) probably_damaging(0.988) TCGA-95-7944-01 15 90319945 90319945 G T MESP2 Silent p.L119L 0.31 TCGA-95-7944-01 16 111903 111903 C T RHBDF1 Silent p.E367E 0.35 TCGA-95-7944-01 16 1129595 1129595 G C SSTR5 Missense_Mutation p.E243Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-95-7944-01 16 22926611 22926611 A G HS3ST2 Missense_Mutation p.I278V 0.13 tolerated(0.36) benign(0.193) TCGA-95-7944-01 16 2569287 2569287 G A RP11-20I23.1 Missense_Mutation p.G345E 0.12 unknown(0) TCGA-95-7944-01 16 28619801 28619801 G C SULT1A1 Nonsense_Mutation p.S91* 0.18 TCGA-95-7944-01 16 30970052 30970052 G C SETD1A 5'UTR 0.14 TCGA-95-7944-01 16 30970072 30970072 G A SETD1A Missense_Mutation p.G7E 0.16 benign(0.373) TCGA-95-7944-01 16 31201042 31201042 C G FUS Silent p.G331G 0.10 TCGA-95-7944-01 16 31427868 31427868 G A ITGAD Silent p.V800V 0.20 TCGA-95-7944-01 16 3458971 3458971 C T ZNF174 3'UTR 0.12 TCGA-95-7944-01 16 58314605 58314605 C T PRSS54 Silent p.L237L 0.27 TCGA-95-7944-01 16 61687657 61687657 C G CDH8 Missense_Mutation p.R752P 0.11 tolerated(0.13) possibly_damaging(0.638) TCGA-95-7944-01 16 67862267 67862267 G A CENPT Missense_Mutation p.S530L 0.13 deleterious(0) probably_damaging(0.997) TCGA-95-7944-01 16 68719187 68719187 G A CDH3 Missense_Mutation p.D502N 0.17 deleterious(0) probably_damaging(0.998) TCGA-95-7944-01 16 69718866 69718866 C T NFAT5 Silent p.A589A 0.11 TCGA-95-7944-01 16 70902626 70902626 G A HYDIN Silent p.I3719I 0.19 TCGA-95-7944-01 16 72170667 72170667 C T PMFBP1 Missense_Mutation p.E324K 0.13 deleterious(0.01) possibly_damaging(0.716) TCGA-95-7944-01 16 86544587 86544587 C T FOXF1 Missense_Mutation p.R138W 0.17 deleterious(0) probably_damaging(1) TCGA-95-7944-01 16 8722877 8722877 G C METTL22 Missense_Mutation p.D142H 0.20 deleterious(0.01) possibly_damaging(0.77) TCGA-95-7944-01 16 89930239 89930239 C T SPIRE2 Missense_Mutation p.S583L 0.18 deleterious(0) possibly_damaging(0.498) TCGA-95-7944-01 17 1686771 1686771 C G SMYD4 Splice_Site p.X674_splice 0.35 TCGA-95-7944-01 17 2297373 2297373 A G MNT Silent p.N257N 0.30 TCGA-95-7944-01 17 29664546 29664547 TT - NF1 Frame_Shift_Del p.F2197Cfs*44 0.23 TCGA-95-7944-01 17 35969387 35969387 C G SYNRG Missense_Mutation p.G6A 0.36 deleterious_low_confidence(0) unknown(0) TCGA-95-7944-01 17 41931336 41931336 C T CD300LG Missense_Mutation p.R215C 0.29 deleterious(0.01) possibly_damaging(0.836) TCGA-95-7944-01 17 55183810 55183810 G A AKAP1 Missense_Mutation p.E329K 0.36 tolerated(0.77) possibly_damaging(0.636) TCGA-95-7944-01 17 72349089 72349089 G A KIF19 Missense_Mutation p.E704K 0.25 deleterious(0.01) benign(0.365) TCGA-95-7944-01 17 73754672 73754672 C T GALK1 Missense_Mutation p.D268N 0.40 tolerated(0.32) benign(0.001) TCGA-95-7944-01 17 74729630 74729630 C G METTL23 Silent p.L145L 0.37 TCGA-95-7944-01 17 7578443 7578443 A C TP53 Missense_Mutation p.Y163D 0.17 deleterious(0) probably_damaging(1) TCGA-95-7944-01 17 76046235 76046235 G C TNRC6C Missense_Mutation p.E364D 0.50 tolerated(1) benign(0.003) TCGA-95-7944-01 18 12859241 12859241 C T PTPN2 Missense_Mutation p.E28K 0.15 tolerated(0.13) benign(0.001) TCGA-95-7944-01 18 178978 178978 G A USP14 Missense_Mutation p.E81K 0.15 tolerated(0.3) benign(0.15) TCGA-95-7944-01 18 29037027 29037027 G A DSG3 Silent p.V52V 0.12 TCGA-95-7944-01 18 29706662 29706662 C A RNF138 Missense_Mutation p.P190T 0.09 tolerated(0.08) possibly_damaging(0.788) TCGA-95-7944-01 18 44435364 44435364 C A PIAS2 Missense_Mutation p.D224Y 0.15 deleterious(0) benign(0.215) TCGA-95-7944-01 18 47016844 47016844 C G RPL17 Missense_Mutation p.E99Q 0.14 deleterious(0.04) benign(0.133) TCGA-95-7944-01 18 61305270 61305270 G C SERPINB4 Missense_Mutation p.R286G 0.17 deleterious(0) probably_damaging(0.975) TCGA-95-7944-01 19 1045163 1045163 G C ABCA7 Missense_Mutation p.G460R 0.24 tolerated(0.27) probably_damaging(0.966) TCGA-95-7944-01 19 10572350 10572350 C T PDE4A Silent p.I538I 0.26 TCGA-95-7944-01 19 10795018 10795018 C T ILF3 Intron 0.27 TCGA-95-7944-01 19 13397674 13397674 C G CACNA1A Missense_Mutation p.D1066H 0.21 benign(0.207) TCGA-95-7944-01 19 17434398 17434398 G C ANO8 Silent p.L1209L 0.25 TCGA-95-7944-01 19 2151334 2151334 C G AP3D1 5'UTR 0.21 TCGA-95-7944-01 19 35422794 35422794 G T ZNF30 Silent p.V19V 0.29 TCGA-95-7944-01 19 3600065 3600065 C T TBXA2R Missense_Mutation p.E190K 0.14 tolerated(0.38) benign(0.182) TCGA-95-7944-01 19 36029287 36029287 C A GAPDHS Missense_Mutation p.F108L 0.14 deleterious_low_confidence(0.03) probably_damaging(0.986) TCGA-95-7944-01 19 36234745 36234745 G T U2AF1L4 Missense_Mutation p.S123Y 0.21 deleterious_low_confidence(0) benign(0.266) TCGA-95-7944-01 19 41351330 41351330 C T CYP2A6 Missense_Mutation p.E344K 0.16 probably_damaging(1) TCGA-95-7944-01 19 42560902 42560902 G T GRIK5 Missense_Mutation p.T272K 0.19 tolerated(0.56) benign(0.056) TCGA-95-7944-01 19 42621423 42621423 C G POU2F2 Missense_Mutation p.L94F 0.18 deleterious(0) possibly_damaging(0.709) TCGA-95-7944-01 19 42864988 42864988 G A MEGF8 Silent p.G1783G 0.40 TCGA-95-7944-01 19 43031264 43031264 C T CEACAM1 Missense_Mutation p.G118E 0.18 deleterious(0) probably_damaging(1) TCGA-95-7944-01 19 43269774 43269774 C A PSG8 5'UTR 0.19 TCGA-95-7944-01 19 43430715 43430715 C G PSG7 Missense_Mutation p.R288P 0.21 tolerated(0.21) possibly_damaging(0.822) TCGA-95-7944-01 19 44777994 44777994 G C ZNF233 Missense_Mutation p.G394A 0.16 deleterious(0.04) benign(0.028) TCGA-95-7944-01 19 49473872 49473872 C G GYS1 Silent p.R580R 0.17 TCGA-95-7944-01 19 49519073 49519073 G A RUVBL2 Splice_Site p.X456_splice 0.18 TCGA-95-7944-01 19 49814595 49814595 C G SLC6A16 Missense_Mutation p.E4Q 0.27 deleterious(0.03) possibly_damaging(0.483) TCGA-95-7944-01 19 53302742 53302742 G C ZNF28 3'UTR 0.25 TCGA-95-7944-01 19 53994330 53994330 C G ZNF813 Missense_Mutation p.Q282E 0.20 deleterious(0.04) benign(0.133) TCGA-95-7944-01 19 58944982 58944982 C T ZNF132 Missense_Mutation p.R610Q 0.17 tolerated(0.65) possibly_damaging(0.488) TCGA-95-7944-01 19 58945414 58945414 C G ZNF132 Missense_Mutation p.R466T 0.22 deleterious(0) possibly_damaging(0.819) TCGA-95-7944-01 19 58945666 58945666 C G ZNF132 Missense_Mutation p.R382T 0.18 deleterious(0) possibly_damaging(0.883) TCGA-95-7944-01 19 58945763 58945763 C G ZNF132 Missense_Mutation p.D350H 0.17 deleterious(0.01) benign(0.012) TCGA-95-7944-01 19 7676948 7676948 C A CAMSAP3 Silent p.P550P 0.16 TCGA-95-7944-01 19 8595209 8595209 G T MYO1F Missense_Mutation p.N733K 0.20 tolerated(0.25) benign(0.209) TCGA-95-7944-01 1 100327208 100327208 G A AGL Missense_Mutation p.D78N 0.15 tolerated(0.17) benign(0.188) TCGA-95-7944-01 1 118550738 118550738 C G SPAG17 Missense_Mutation p.E1506Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-95-7944-01 1 145608189 145608189 C G POLR3C Missense_Mutation p.D170H 0.18 tolerated(0.1) benign(0.344) TCGA-95-7944-01 1 152329308 152329308 C T FLG2 Silent p.Q318Q 0.16 TCGA-95-7944-01 1 152975541 152975541 G T SPRR3 Missense_Mutation p.Q15H 0.18 tolerated(0.05) unknown(0) TCGA-95-7944-01 1 154956129 154956129 G A FLAD1 5'UTR 0.18 TCGA-95-7944-01 1 157106140 157106140 T G ETV3 Missense_Mutation p.K2T 0.22 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-95-7944-01 1 16817148 16817148 C T CROCCP3 RNA 0.15 TCGA-95-7944-01 1 16901153 16901153 C G NBPF1 Missense_Mutation p.E743Q 0.06 tolerated(0.77) probably_damaging(0.974) TCGA-95-7944-01 1 193028909 193028909 G T UCHL5 5'Flank 0.31 TCGA-95-7944-01 1 197396599 197396599 G C CRB1 Missense_Mutation p.R715T 0.14 deleterious(0) benign(0.193) TCGA-95-7944-01 1 201972488 201972488 T C RNPEP Missense_Mutation p.L517P 0.17 tolerated(0.28) benign(0.046) TCGA-95-7944-01 1 201982158 201982158 C G ELF3 Missense_Mutation p.P228A 0.14 tolerated(0.34) benign(0.03) TCGA-95-7944-01 1 220273987 220273987 G C IARS2 Missense_Mutation p.K182N 0.18 tolerated(0.2) benign(0.043) TCGA-95-7944-01 1 221912616 221912616 C G DUSP10 Missense_Mutation p.K157N 0.18 tolerated(0.09) benign(0.01) TCGA-95-7944-01 1 228238393 228238393 C A WNT3A Nonsense_Mutation p.S117* 0.17 TCGA-95-7944-01 1 228246923 228246923 C T WNT3A Silent p.V272V 0.31 TCGA-95-7944-01 1 228246937 228246937 C T WNT3A Missense_Mutation p.S277L 0.31 deleterious(0) probably_damaging(1) TCGA-95-7944-01 1 228486202 228486202 G A OBSCN Missense_Mutation p.E4332K 0.20 probably_damaging(0.996) TCGA-95-7944-01 1 237843832 237843832 G T RYR2 Missense_Mutation p.C2991F 0.32 benign(0.069) TCGA-95-7944-01 1 240070879 240070879 C G CHRM3 Missense_Mutation p.S43C 0.24 deleterious(0.03) benign(0.285) TCGA-95-7944-01 1 3328631 3328631 G C PRDM16 Missense_Mutation p.D624H 0.26 deleterious(0) probably_damaging(0.992) TCGA-95-7944-01 1 38168972 38168972 G A CDCA8 Silent p.V179V 0.19 TCGA-95-7944-01 1 43212771 43212771 G A LEPRE1 Missense_Mutation p.L743F 0.04 tolerated_low_confidence(0.81) possibly_damaging(0.765) TCGA-95-7944-01 1 44058142 44058142 C T PTPRF Silent p.F561F 0.23 TCGA-95-7944-01 1 45805821 45805821 G C MUTYH Intron 0.21 TCGA-95-7944-01 1 52901122 52901122 C A ZCCHC11 Missense_Mutation p.R1393L 0.23 deleterious(0) possibly_damaging(0.496) TCGA-95-7944-01 1 52901123 52901123 G A ZCCHC11 Missense_Mutation p.R1393C 0.23 deleterious(0) possibly_damaging(0.88) TCGA-95-7944-01 1 55175851 55175851 G C MROH7 Missense_Mutation p.L1321F 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.807) TCGA-95-7944-01 1 66058398 66058398 C T LEPR Missense_Mutation p.H185Y 0.18 deleterious(0) benign(0.012) TCGA-95-7944-01 1 87329192 87329192 C G SEP15 Missense_Mutation p.E152Q 0.10 tolerated(0.1) probably_damaging(0.96) TCGA-95-7944-01 20 17705763 17705763 C T BANF2 Silent p.L38L 0.17 TCGA-95-7944-01 20 21349164 21349164 T - XRN2 Frame_Shift_Del p.Y841Tfs*10 0.14 TCGA-95-7944-01 20 23424636 23424636 C A CSTL1 Missense_Mutation p.D95E 0.18 tolerated(0.47) benign(0.003) TCGA-95-7944-01 20 31385001 31385001 C T DNMT3B Silent p.F462F 0.15 TCGA-95-7944-01 20 44592630 44592630 C T ZNF335 Splice_Site p.X368_splice 0.15 TCGA-95-7944-01 20 5904094 5904094 G A CHGB Missense_Mutation p.R435K 0.15 tolerated(0.53) benign(0.01) TCGA-95-7944-01 20 61512150 61512150 C T DIDO1 Missense_Mutation p.E1720K 0.18 benign(0.242) TCGA-95-7944-01 21 27253876 27253876 C A APP 3'UTR 0.36 TCGA-95-7944-01 21 42808970 42808970 G A MX1 Silent p.L109L 0.15 TCGA-95-7944-01 21 42812945 42812945 G C MX1 Missense_Mutation p.R241S 0.12 deleterious(0) probably_damaging(1) TCGA-95-7944-01 21 47320913 47320913 T A PCBP3 Missense_Mutation p.S75R 0.11 deleterious(0) probably_damaging(1) TCGA-95-7944-01 21 47575467 47575467 C G FTCD 5'UTR 0.24 TCGA-95-7944-01 22 21348942 21348942 G A LZTR1 Missense_Mutation p.E571K 0.25 tolerated(0.16) benign(0.343) TCGA-95-7944-01 22 26902337 26902337 C A TFIP11 Missense_Mutation p.G151V 0.17 deleterious(0) probably_damaging(1) TCGA-95-7944-01 22 42968465 42968465 C T SERHL2 Missense_Mutation p.S252L 0.26 tolerated(0.46) benign(0.016) TCGA-95-7944-01 22 50649150 50649150 G A SELO Silent p.R387R 0.31 TCGA-95-7944-01 2 107040796 107040796 C T RGPD3 Silent p.L1209L 0.23 TCGA-95-7944-01 2 108994907 108994907 C T SULT1C4 Silent p.I38I 0.24 TCGA-95-7944-01 2 116593822 116593822 G C DPP10 Missense_Mutation p.L684F 0.20 tolerated(1) benign(0.001) TCGA-95-7944-01 2 118582222 118582222 G C DDX18 Missense_Mutation p.E382Q 0.23 tolerated(0.17) benign(0.04) TCGA-95-7944-01 2 136678164 136678164 C A DARS Missense_Mutation p.R273I 0.19 deleterious(0) probably_damaging(0.973) TCGA-95-7944-01 2 148730380 148730380 C A ORC4 Silent p.L51L 0.13 TCGA-95-7944-01 2 159922446 159922446 G A TANC1 Silent p.K8K 0.19 TCGA-95-7944-01 2 170012841 170012841 A G LRP2 Missense_Mutation p.C4032R 0.20 probably_damaging(1) TCGA-95-7944-01 2 170103489 170103489 G A LRP2 Silent p.N972N 0.17 TCGA-95-7944-01 2 172195853 172195853 C T METTL8 Silent p.V149V 0.12 TCGA-95-7944-01 2 174086030 174086030 G A MLTK Intron 0.27 TCGA-95-7944-01 2 181925523 181925523 G C UBE2E3 Missense_Mutation p.L170F 0.17 tolerated(0.08) probably_damaging(0.925) TCGA-95-7944-01 2 207171761 207171761 C G ZDBF2 Missense_Mutation p.L837V 0.20 tolerated(0.15) possibly_damaging(0.745) TCGA-95-7944-01 2 222433460 222433460 A C EPHA4 Missense_Mutation p.I46R 0.26 deleterious(0.04) benign(0.156) TCGA-95-7944-01 2 27679435 27679435 C G IFT172 Missense_Mutation p.R1105T 0.10 deleterious(0) benign(0.358) TCGA-95-7944-01 2 28635106 28635106 G C FOSL2 Missense_Mutation p.E258Q 0.19 tolerated(0.59) possibly_damaging(0.651) TCGA-95-7944-01 2 28635135 28635135 G A FOSL2 Silent p.V267V 0.21 TCGA-95-7944-01 2 29375645 29375645 C T CLIP4 Silent p.I372I 0.19 TCGA-95-7944-01 2 70890694 70890694 C G ADD2 Missense_Mutation p.D682H 0.21 deleterious(0.03) possibly_damaging(0.525) TCGA-95-7944-01 2 74071950 74071950 G A STAMBP Missense_Mutation p.E72K 0.17 deleterious(0) possibly_damaging(0.717) TCGA-95-7944-01 2 79254997 79254997 G A REG3G Nonsense_Mutation p.W133* 0.16 TCGA-95-7944-01 2 88327782 88327782 G A KRCC1 Silent p.L101L 0.23 TCGA-95-7944-01 2 96993668 96993668 G C ITPRIPL1 Missense_Mutation p.Q441H 0.25 deleterious(0.04) benign(0.444) TCGA-95-7944-01 3 111603503 111603503 C T PHLDB2 Silent p.I193I 0.10 TCGA-95-7944-01 3 136646998 136646998 C T NCK1 Missense_Mutation p.P52L 0.22 deleterious(0) possibly_damaging(0.791) TCGA-95-7944-01 3 136701011 136701011 G C IL20RB Missense_Mutation p.E75D 0.22 deleterious(0) probably_damaging(0.988) TCGA-95-7944-01 3 169802552 169802552 A T GPR160 Missense_Mutation p.L264F 0.28 tolerated(0.39) benign(0.004) TCGA-95-7944-01 3 184429374 184429374 G A MAGEF1 Missense_Mutation p.T79M 0.26 deleterious(0) possibly_damaging(0.749) TCGA-95-7944-01 3 186395478 186395478 C T HRG Missense_Mutation p.P462S 0.21 deleterious(0.03) possibly_damaging(0.682) TCGA-95-7944-01 3 32933216 32933216 G A TRIM71 Silent p.Q840Q 0.24 TCGA-95-7944-01 3 39229551 39229551 C G XIRP1 Silent p.G462G 0.29 TCGA-95-7944-01 3 41953120 41953120 C T ULK4 Missense_Mutation p.D310N 0.27 tolerated(0.24) benign(0.013) TCGA-95-7944-01 3 42750393 42750393 G C CCDC13 3'UTR 0.09 TCGA-95-7944-01 3 4856130 4856130 G T ITPR1 Nonsense_Mutation p.E2514* 0.21 TCGA-95-7944-01 3 52713719 52713719 G T PBRM1 Silent p.S3S 0.14 TCGA-95-7944-01 3 77147253 77147253 G T ROBO2 Silent p.L66L 0.24 TCGA-95-7944-01 3 97984037 97984037 C T OR5H6 Silent p.P303P 0.21 TCGA-95-7944-01 4 155253832 155253832 T A DCHS2 Silent p.T677T 0.30 TCGA-95-7944-01 4 156618245 156618245 G C GUCY1A3 Missense_Mutation p.E76Q 0.26 deleterious(0.02) probably_damaging(0.978) TCGA-95-7944-01 4 25366682 25366682 C T ZCCHC4 Missense_Mutation p.P434S 0.20 tolerated(0.05) possibly_damaging(0.857) TCGA-95-7944-01 4 47560965 47560965 G A ATP10D Silent p.Q820Q 0.30 TCGA-95-7944-01 4 73013182 73013182 G A NPFFR2 Missense_Mutation p.E408K 0.27 tolerated(0.06) benign(0.05) TCGA-95-7944-01 4 74005309 74005311 TTG - ANKRD17 In_Frame_Del p.Q1008del 0.19 TCGA-95-7944-01 4 79831884 79831884 C G BMP2K Nonsense_Mutation p.S728* 0.33 TCGA-95-7944-01 4 93225895 93225895 G A GRID2 Missense_Mutation p.G30R 0.17 deleterious(0) probably_damaging(1) TCGA-95-7944-01 4 9784185 9784185 C G DRD5 Missense_Mutation p.L178V 0.21 deleterious(0) probably_damaging(0.936) TCGA-95-7944-01 5 114506854 114506854 T A TRIM36 Intron 0.06 TCGA-95-7944-01 5 129520242 129520242 G C CHSY3 Silent p.L469L 0.07 TCGA-95-7944-01 5 131324548 131324548 G A ACSL6 Missense_Mutation p.P201L 0.16 deleterious(0) probably_damaging(1) TCGA-95-7944-01 5 134077181 134077181 C T CAMLG Missense_Mutation p.L201F 0.10 tolerated(0.32) benign(0.011) TCGA-95-7944-01 5 134130537 134130537 C G DDX46 Intron 0.16 TCGA-95-7944-01 5 140502308 140502308 A T PCDHB4 Missense_Mutation p.H243L 0.03 deleterious_low_confidence(0.01) benign(0.007) TCGA-95-7944-01 5 140581409 140581409 G T PCDHB11 Missense_Mutation p.V688F 0.03 deleterious_low_confidence(0.01) benign(0.029) TCGA-95-7944-01 5 140589697 140589697 G C PCDHB12 Missense_Mutation p.E406D 0.10 tolerated_low_confidence(0.19) benign(0.097) TCGA-95-7944-01 5 140856119 140856119 G A PCDHGC3 Missense_Mutation p.E146K 0.06 deleterious(0) probably_damaging(0.999) TCGA-95-7944-01 5 1489874 1489874 C T LPCAT1 Missense_Mutation p.G198E 0.22 deleterious(0.01) probably_damaging(0.955) TCGA-95-7944-01 5 150846811 150846811 C G SLC36A1 Silent p.V157V 0.18 TCGA-95-7944-01 5 176289834 176289834 G C UNC5A Missense_Mutation p.D94H 0.11 deleterious(0) possibly_damaging(0.866) TCGA-95-7944-01 5 32089429 32089429 G C PDZD2 Missense_Mutation p.E1959Q 0.23 deleterious(0.01) possibly_damaging(0.46) TCGA-95-7944-01 5 33448722 33448722 C A TARS Missense_Mutation p.L72M 0.17 deleterious(0.02) benign(0.137) TCGA-95-7944-01 5 43529946 43529946 C G PAIP1 Missense_Mutation p.E430Q 0.21 tolerated(0.34) benign(0.025) TCGA-95-7944-01 5 52403032 52403032 G A MOCS2 5'UTR 0.16 TCGA-95-7944-01 5 72311486 72311486 C T FCHO2 Missense_Mutation p.H212Y 0.12 deleterious(0) benign(0.003) TCGA-95-7944-01 5 77385268 77385268 C G AP3B1 Missense_Mutation p.L842F 0.08 deleterious(0.04) possibly_damaging(0.587) TCGA-95-7944-01 5 78915478 78915478 C G PAPD4 Missense_Mutation p.P3A 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.706) TCGA-95-7944-01 5 82815822 82815822 C T VCAN Missense_Mutation p.S566F 0.18 tolerated(0.08) possibly_damaging(0.837) TCGA-95-7944-01 5 83680196 83680196 C G EDIL3 5'UTR 0.12 TCGA-95-7944-01 5 93076688 93076688 C T POU5F2 Silent p.E194E 0.11 TCGA-95-7944-01 6 114378593 114378593 C G HS3ST5 Missense_Mutation p.R290T 0.25 deleterious(0) probably_damaging(0.957) TCGA-95-7944-01 6 133767825 133767825 T C EYA4 Silent p.T47T 0.20 TCGA-95-7944-01 6 142397008 142397008 G C NMBR Missense_Mutation p.S317C 0.24 deleterious(0) probably_damaging(1) TCGA-95-7944-01 6 157713913 157713913 G A TMEM242 3'UTR 0.17 TCGA-95-7944-01 6 159184342 159184342 C T SYTL3 Silent p.L508L 0.31 TCGA-95-7944-01 6 160510945 160510945 C T IGF2R Intron 0.20 TCGA-95-7944-01 6 30691701 30691701 G A TUBB Missense_Mutation p.E288K 0.20 deleterious_low_confidence(0.01) probably_damaging(0.918) TCGA-95-7944-01 6 31864717 31864717 C G EHMT2 Missense_Mutation p.R31T 0.20 deleterious_low_confidence(0.05) possibly_damaging(0.879) TCGA-95-7944-01 6 33638445 33638445 C T ITPR3 Intron 0.22 TCGA-95-7944-01 6 43274007 43274007 G C CRIP3 Missense_Mutation p.L149V 0.17 deleterious(0) possibly_damaging(0.848) TCGA-95-7944-01 7 100675543 100675543 C A MUC17 Silent p.L282L 0.36 TCGA-95-7944-01 7 127669962 127669962 G A LRRC4 Silent p.L244L 0.16 TCGA-95-7944-01 7 127970944 127970944 C T RBM28 Missense_Mutation p.E353K 0.10 tolerated(0.09) probably_damaging(0.994) TCGA-95-7944-01 7 128414567 128414567 C G OPN1SW Silent p.L224L 0.15 TCGA-95-7944-01 7 128490867 128490867 G A FLNC Silent p.R1803R 0.20 TCGA-95-7944-01 7 131859601 131859601 C G PLXNA4 Missense_Mutation p.R1318T 0.10 deleterious(0) probably_damaging(0.999) TCGA-95-7944-01 7 133812364 133812364 G A LRGUK Missense_Mutation p.E82K 0.13 deleterious_low_confidence(0.03) benign(0.006) TCGA-95-7944-01 7 141755355 141755355 C T MGAM Intron 0.15 TCGA-95-7944-01 7 19765276 19765276 G C TMEM196 Missense_Mutation p.S107C 0.14 deleterious(0.02) possibly_damaging(0.843) TCGA-95-7944-01 7 27285980 27285980 C T EVX1 Missense_Mutation p.S387L 0.07 deleterious(0) possibly_damaging(0.826) TCGA-95-7944-01 7 31683046 31683046 C A CCDC129 Missense_Mutation p.L714I 0.18 deleterious(0.05) benign(0.271) TCGA-95-7944-01 7 43477759 43477759 G C HECW1 Intron 0.13 TCGA-95-7944-01 7 5568044 5568044 C G ACTB Missense_Mutation p.E224Q 0.14 tolerated_low_confidence(0.06) benign(0.343) TCGA-95-7944-01 7 56156583 56156583 C G PHKG1 Missense_Mutation p.E18Q 0.17 tolerated(0.63) benign(0.02) TCGA-95-7944-01 7 645827 645827 C G PRKAR1B Intron 0.15 TCGA-95-7944-01 7 77649163 77649163 C A MAGI2 Missense_Mutation p.Q1279H 0.17 tolerated(0.14) benign(0) TCGA-95-7944-01 7 79828601 79828601 G A GNAI1 Missense_Mutation p.E122K 0.17 deleterious(0.04) benign(0.044) TCGA-95-7944-01 7 92765007 92765007 G A SAMD9L Missense_Mutation p.S93L 0.12 tolerated(0.18) benign(0.06) TCGA-95-7944-01 7 93055669 93055669 C G CALCR Nonstop_Mutation p.*509Sext*2 0.16 TCGA-95-7944-01 7 94540203 94540203 C T PPP1R9A Missense_Mutation p.P260S 0.15 tolerated(0.16) benign(0.121) TCGA-95-7944-01 7 99055881 99055881 G C ATP5J2 3'UTR 0.10 TCGA-95-7944-01 8 145742824 145742824 C G RECQL4 Missense_Mutation p.E63Q 0.20 tolerated(0.97) benign(0.002) TCGA-95-7944-01 8 24201067 24201067 C T ADAM28 Missense_Mutation p.P654S 0.25 deleterious(0) probably_damaging(1) TCGA-95-7944-01 8 27401271 27401271 G C EPHX2 Silent p.L485L 0.16 TCGA-95-7944-01 8 70964454 70964454 G C PRDM14 Missense_Mutation p.S525C 0.20 deleterious(0.03) benign(0.054) TCGA-95-7944-01 8 72111650 72111650 C T EYA1 Silent p.A568A 0.18 TCGA-95-7944-01 8 95658444 95658444 G C ESRP1 Missense_Mutation p.E142Q 0.17 deleterious(0) probably_damaging(0.996) TCGA-95-7944-01 9 100895494 100895494 C T CORO2A Missense_Mutation p.M158I 0.14 tolerated(0.88) possibly_damaging(0.89) TCGA-95-7944-01 9 100899883 100899883 C T CORO2A Missense_Mutation p.E97K 0.20 deleterious(0.02) benign(0.297) TCGA-95-7944-01 9 105767323 105767323 G T CYLC2 Missense_Mutation p.G137V 0.11 tolerated(0.26) benign(0.003) TCGA-95-7944-01 9 109765590 109765590 G C ZNF462 Missense_Mutation p.E2358Q 0.20 probably_damaging(0.989) TCGA-95-7944-01 9 116930895 116930895 C T COL27A1 Nonsense_Mutation p.Q354* 0.24 TCGA-95-7944-01 9 123911011 123911011 C G CNTRL Nonsense_Mutation p.S1174* 0.15 TCGA-95-7944-01 9 125622316 125622316 G T RC3H2 Missense_Mutation p.Q577K 0.16 tolerated(0.67) benign(0) TCGA-95-7944-01 9 127064309 127064309 G A NEK6 Silent p.G56G 0.19 TCGA-95-7944-01 9 135158732 135158732 C T SETX Silent p.L2155L 0.20 TCGA-95-7944-01 9 139621221 139621221 C T FAM69B 3'Flank 0.14 TCGA-95-7944-01 9 139925416 139925416 G A FUT7 Missense_Mutation p.R259W 0.16 deleterious(0) probably_damaging(0.982) TCGA-95-7944-01 9 6554723 6554723 T C GLDC Missense_Mutation p.K754R 0.17 deleterious(0) possibly_damaging(0.872) TCGA-95-7944-01 9 72333267 72333267 C G PTAR1 Missense_Mutation p.L400F 0.13 tolerated_low_confidence(0.71) benign(0.011) TCGA-95-7944-01 9 82333670 82333670 G A TLE4 Silent p.Q458Q 0.20 TCGA-95-7944-01 9 91930174 91930175 AG - CKS2 Frame_Shift_Del p.L52Rfs*9 0.17 TCGA-95-7944-01 9 97522564 97522564 C T C9orf3 Silent p.L167L 0.18 TCGA-95-7944-01 X 100871508 100871508 C A ARMCX6 Nonsense_Mutation p.E35* 0.30 TCGA-95-7944-01 X 130409661 130409661 C T IGSF1 Missense_Mutation p.R997Q 0.26 tolerated(1) benign(0.001) TCGA-95-7944-01 X 134185796 134185796 C G FAM127B 3'UTR 0.26 TCGA-95-7944-01 X 1401583 1401583 C T CSF2RA 5'UTR 0.09 TCGA-95-7944-01 Y 21893666 21893666 C T KDM5D Missense_Mutation p.E455K 0.39 deleterious(0.02) possibly_damaging(0.644) TCGA-95-7947-01 10 104184914 104184915 - G CUEDC2 Frame_Shift_Ins p.L11Pfs*19 0.25 TCGA-95-7947-01 10 112337194 112337194 C T SMC3 Missense_Mutation p.R72C 0.36 deleterious(0) probably_damaging(0.964) TCGA-95-7947-01 10 115986915 115986915 C T TDRD1 Missense_Mutation p.S1087F 0.34 deleterious(0.02) probably_damaging(0.919) TCGA-95-7947-01 10 117607396 117607396 C T ATRNL1 Silent p.P1304P 0.36 TCGA-95-7947-01 10 117823905 117823905 G T GFRA1 3'UTR 0.26 TCGA-95-7947-01 10 118386379 118386379 T A PNLIPRP2 Missense_Mutation p.M112K 0.48 deleterious(0) possibly_damaging(0.676) TCGA-95-7947-01 10 123662043 123662043 C A ATE1 Missense_Mutation p.A226S 0.29 tolerated(0.31) benign(0.008) TCGA-95-7947-01 10 123970110 123970110 C T TACC2 Missense_Mutation p.S2057L 0.30 benign(0.059) TCGA-95-7947-01 10 127414318 127414318 G C EDRF1 Missense_Mutation p.D235H 0.30 deleterious(0.03) possibly_damaging(0.452) TCGA-95-7947-01 10 127460821 127460821 G C MMP21 Missense_Mutation p.D315E 0.21 deleterious(0.03) possibly_damaging(0.457) TCGA-95-7947-01 10 131761712 131761712 G T EBF3 Missense_Mutation p.F70L 0.17 deleterious(0.02) probably_damaging(0.987) TCGA-95-7947-01 10 13337539 13337539 C G PHYH Missense_Mutation p.V68L 0.15 tolerated(0.42) benign(0.107) TCGA-95-7947-01 10 134261355 134261355 G A C10orf91 Silent p.T76T 0.23 TCGA-95-7947-01 10 32329346 32329346 C T KIF5B Missense_Mutation p.G85E 0.14 deleterious(0) probably_damaging(1) TCGA-95-7947-01 10 33137593 33137593 C T C10ORF68 Missense_Mutation p.T524I 0.16 tolerated(0.06) benign(0.297) TCGA-95-7947-01 10 49662178 49662178 C T ARHGAP22 Silent p.V289V 0.33 TCGA-95-7947-01 10 50957830 50957830 C A OGDHL Missense_Mutation p.R310L 0.38 deleterious(0) benign(0.214) TCGA-95-7947-01 10 52575818 52575818 G C A1CF Silent p.A371A 0.24 TCGA-95-7947-01 10 55591228 55591228 C T PCDH15 Missense_Mutation p.R1350H 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-95-7947-01 10 5965635 5965635 C T FBXO18 Nonsense_Mutation p.Q843* 0.23 TCGA-95-7947-01 10 60027344 60027344 G A IPMK Missense_Mutation p.R10W 0.58 deleterious_low_confidence(0.01) probably_damaging(0.93) TCGA-95-7947-01 10 61932732 61932732 C T ANK3 Missense_Mutation p.A770T 0.16 probably_damaging(0.989) TCGA-95-7947-01 10 69926080 69926080 C A MYPN Missense_Mutation p.L544I 0.53 tolerated(0.4) benign(0.052) TCGA-95-7947-01 10 70706177 70706177 G C DDX50 Missense_Mutation p.D669H 0.22 deleterious(0.01) probably_damaging(0.96) TCGA-95-7947-01 10 70706499 70706499 G C DDX50 3'UTR 0.32 TCGA-95-7947-01 10 72539364 72539364 G A TBATA Missense_Mutation p.P138S 0.38 deleterious(0.03) probably_damaging(1) TCGA-95-7947-01 10 871104 871104 G A LARP4B Missense_Mutation p.T462I 0.39 deleterious(0.01) possibly_damaging(0.77) TCGA-95-7947-01 10 87615890 87615890 T C GRID1 Missense_Mutation p.K337E 0.36 deleterious(0.04) probably_damaging(0.998) TCGA-95-7947-01 10 98380131 98380131 G A PIK3AP1 Missense_Mutation p.S640L 0.35 deleterious(0.01) probably_damaging(0.946) TCGA-95-7947-01 11 101347075 101347075 C A TRPC6 Missense_Mutation p.L567F 0.25 deleterious(0.02) possibly_damaging(0.828) TCGA-95-7947-01 11 103153800 103153800 G A DYNC2H1 Missense_Mutation p.V3633M 0.25 benign(0.388) TCGA-95-7947-01 11 111592583 111592583 C T SIK2 Silent p.V658V 0.39 TCGA-95-7947-01 11 111941400 111941400 G C PIH1D2 Missense_Mutation p.S191R 0.06 tolerated(0.36) possibly_damaging(0.598) TCGA-95-7947-01 11 113194080 113194080 G C TTC12 Missense_Mutation p.K43N 0.34 tolerated(0.07) benign(0.031) TCGA-95-7947-01 11 116707841 116707841 C T APOA1 Missense_Mutation p.E26K 0.20 deleterious(0.01) possibly_damaging(0.673) TCGA-95-7947-01 11 118926253 118926253 C G HYOU1 Silent p.V72V 0.20 TCGA-95-7947-01 11 119989012 119989012 C A TRIM29 Missense_Mutation p.V516F 0.40 deleterious(0.04) benign(0.27) TCGA-95-7947-01 11 123753962 123753962 A G TMEM225 Silent p.S187S 0.16 TCGA-95-7947-01 11 124135246 124135246 C A OR8G5 Missense_Mutation p.A175D 0.27 deleterious(0) benign(0.051) TCGA-95-7947-01 11 124135248 124135248 T G OR8G5 Missense_Mutation p.C176G 0.26 deleterious(0) possibly_damaging(0.841) TCGA-95-7947-01 11 124310488 124310488 C T OR8B8 Missense_Mutation p.G165D 0.22 deleterious_low_confidence(0) benign(0.102) TCGA-95-7947-01 11 130064080 130064080 C T ST14 Silent p.T304T 0.33 TCGA-95-7947-01 11 131781292 131781292 C T NTM 5'Flank 0.44 TCGA-95-7947-01 11 17981053 17981053 C T SERGEF Missense_Mutation p.M325I 0.27 tolerated(0.64) benign(0) TCGA-95-7947-01 11 20129313 20129313 C T NAV2 Silent p.V2374V 0.33 TCGA-95-7947-01 11 20483592 20483592 T C PRMT3 Missense_Mutation p.I380T 0.31 possibly_damaging(0.852) TCGA-95-7947-01 11 36657643 36657643 G T C11orf74 Nonsense_Mutation p.E112* 0.40 TCGA-95-7947-01 11 4790238 4790238 C A OR51F1 Missense_Mutation p.A304S 0.24 deleterious(0.04) benign(0.244) TCGA-95-7947-01 11 51412202 51412202 G T OR4A5 Nonsense_Mutation p.S65* 0.25 TCGA-95-7947-01 11 5345279 5345279 T C OR51B2 Silent p.L83L 0.19 TCGA-95-7947-01 11 55111087 55111087 G C OR4A16 Silent p.L137L 0.32 TCGA-95-7947-01 11 55111088 55111088 G T OR4A16 Missense_Mutation p.V138F 0.32 deleterious_low_confidence(0.01) benign(0.33) TCGA-95-7947-01 11 55541372 55541372 G T OR5D13 Missense_Mutation p.W153C 0.24 tolerated(0.12) benign(0.33) TCGA-95-7947-01 11 55798703 55798703 C A OR5AS1 Missense_Mutation p.T270N 0.23 tolerated(0.08) benign(0.309) TCGA-95-7947-01 11 55944812 55944812 C A OR5J2 Missense_Mutation p.T240N 0.33 deleterious(0) probably_damaging(0.997) TCGA-95-7947-01 11 55999647 55999647 A T OR5T2 Missense_Mutation p.S339T 0.35 deleterious(0.02) benign(0.001) TCGA-95-7947-01 11 56949704 56949704 C A LRRC55 Missense_Mutation p.L113I 0.39 deleterious(0) probably_damaging(0.99) TCGA-95-7947-01 11 57958095 57958095 A G OR9Q2 Missense_Mutation p.M45V 0.37 deleterious(0.01) benign(0.094) TCGA-95-7947-01 11 57995839 57995839 A G OR10Q1 Missense_Mutation p.L170P 0.34 deleterious(0) probably_damaging(0.996) TCGA-95-7947-01 11 59367987 59367987 G C OSBP Silent p.L431L 0.05 TCGA-95-7947-01 11 60610191 60610191 A G CCDC86 Silent p.P198P 0.17 TCGA-95-7947-01 11 61295611 61295611 C G SYT7 Missense_Mutation p.R208P 0.35 tolerated(0.09) benign(0.07) TCGA-95-7947-01 11 62287401 62287401 C T AHNAK Missense_Mutation p.A4830T 0.33 possibly_damaging(0.726) TCGA-95-7947-01 11 63283785 63283785 A T LGALS12 Missense_Mutation p.S312C 0.39 deleterious(0) probably_damaging(0.967) TCGA-95-7947-01 11 64023072 64023072 G T PLCB3 Missense_Mutation p.G194V 0.35 deleterious(0.02) probably_damaging(0.959) TCGA-95-7947-01 11 64033811 64033811 C G PLCB3 Missense_Mutation p.I1097M 0.16 tolerated(0.09) possibly_damaging(0.604) TCGA-95-7947-01 11 65733911 65733911 G A SART1 Missense_Mutation p.D358N 0.32 tolerated(0.09) possibly_damaging(0.562) TCGA-95-7947-01 11 65788969 65788969 G C CATSPER1 Silent p.L563L 0.27 TCGA-95-7947-01 11 66392840 66392840 A G RBM14 Missense_Mutation p.Y498C 0.25 deleterious(0) unknown(0) TCGA-95-7947-01 11 68193529 68193529 G T LRP5 Missense_Mutation p.D1171Y 0.30 deleterious(0) probably_damaging(0.954) TCGA-95-7947-01 11 6891617 6891617 C A OR10A2 Missense_Mutation p.A211D 0.35 deleterious(0.01) possibly_damaging(0.606) TCGA-95-7947-01 11 69950235 69950235 T A ANO1 Missense_Mutation p.F224Y 0.35 tolerated(0.09) probably_damaging(0.993) TCGA-95-7947-01 11 7064056 7064056 G T NLRP14 Missense_Mutation p.A267S 0.30 tolerated(0.35) possibly_damaging(0.858) TCGA-95-7947-01 11 73801966 73801966 C A C2CD3 Missense_Mutation p.G1178V 0.33 tolerated(0.3) benign(0.022) TCGA-95-7947-01 11 7662787 7662787 C A PPFIBP2 Missense_Mutation p.P485T 0.28 tolerated(0.25) benign(0.184) TCGA-95-7947-01 11 7718041 7718041 G A OVCH2 Missense_Mutation p.S371L 0.33 tolerated(0.07) benign(0.104) TCGA-95-7947-01 11 88911070 88911070 C A TYR 5'UTR 0.25 TCGA-95-7947-01 11 92430571 92430571 G T FAT3 Missense_Mutation p.R1210M 0.10 probably_damaging(0.995) TCGA-95-7947-01 11 99690455 99690455 C G CNTN5 Missense_Mutation p.P79R 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.697) TCGA-95-7947-01 12 101801527 101801527 C A ARL1 5'UTR 0.56 TCGA-95-7947-01 12 103238149 103238149 C T PAH Missense_Mutation p.G344S 0.50 deleterious(0) probably_damaging(1) TCGA-95-7947-01 12 104056698 104056698 G A STAB2 Silent p.L648L 0.55 TCGA-95-7947-01 12 10462274 10462274 A T KLRD1 Silent p.I50I 0.63 TCGA-95-7947-01 12 113316981 113316981 A G RPH3A Missense_Mutation p.Q410R 0.50 deleterious(0) benign(0.027) TCGA-95-7947-01 12 117448125 117448125 C G FBXW8 Intron 0.47 TCGA-95-7947-01 12 122623364 122623364 C T MLXIP Missense_Mutation p.S796F 0.52 tolerated(0.11) possibly_damaging(0.794) TCGA-95-7947-01 12 124192153 124192153 G T TCTN2 Nonsense_Mutation p.E663* 0.43 TCGA-95-7947-01 12 124272447 124272447 G A DNAH10 Silent p.E445E 0.31 TCGA-95-7947-01 12 1910245 1910245 C T CACNA2D4 Silent p.S944S 0.31 TCGA-95-7947-01 12 20522876 20522876 G C PDE3A Missense_Mutation p.A220P 0.36 tolerated(0.08) possibly_damaging(0.693) TCGA-95-7947-01 12 20885847 20885847 C T SLCO1C1 Silent p.L397L 0.61 TCGA-95-7947-01 12 22646262 22646262 T A C2CD5 Missense_Mutation p.E386V 0.42 deleterious(0) probably_damaging(0.996) TCGA-95-7947-01 12 27234319 27234319 C T C12orf71 Missense_Mutation p.D200N 0.51 tolerated(0.06) possibly_damaging(0.857) TCGA-95-7947-01 12 41353010 41353010 C T CNTN1 Missense_Mutation p.S593L 0.27 deleterious(0.01) benign(0.439) TCGA-95-7947-01 12 4479503 4479503 G T FGF23 3'UTR 0.35 TCGA-95-7947-01 12 4479504 4479504 C T FGF23 3'UTR 0.36 TCGA-95-7947-01 12 46245869 46245869 A T ARID2 Silent p.L1321L 0.23 TCGA-95-7947-01 12 50483734 50483734 T A SMARCD1 Missense_Mutation p.V280E 0.32 deleterious(0) probably_damaging(0.924) TCGA-95-7947-01 12 51865142 51865142 T C SLC4A8 Missense_Mutation p.L577P 0.33 deleterious(0) probably_damaging(1) TCGA-95-7947-01 12 51865208 51865208 C T SLC4A8 Missense_Mutation p.S599F 0.21 deleterious(0) probably_damaging(0.915) TCGA-95-7947-01 12 52827669 52827669 G T KRT75 Silent p.P140P 0.28 TCGA-95-7947-01 12 52827670 52827670 G T KRT75 Missense_Mutation p.P140H 0.28 deleterious(0) possibly_damaging(0.637) TCGA-95-7947-01 12 53189278 53189278 G T KRT3 Silent p.L183L 0.33 TCGA-95-7947-01 12 53875980 53875980 C G MAP3K12 Silent p.L775L 0.33 TCGA-95-7947-01 12 54975868 54975868 C T PPP1R1A Missense_Mutation p.E99K 0.25 deleterious(0.04) possibly_damaging(0.771) TCGA-95-7947-01 12 56638527 56638527 C T ANKRD52 Silent p.L877L 0.27 TCGA-95-7947-01 12 56872853 56872853 C T GLS2 Missense_Mutation p.E173K 0.34 tolerated(0.87) benign(0.002) TCGA-95-7947-01 12 57485106 57485106 C T NAB2 Silent p.L94L 0.38 TCGA-95-7947-01 12 57559724 57559724 C G LRP1 Silent p.L889L 0.34 TCGA-95-7947-01 12 57572344 57572344 C T LRP1 Missense_Mutation p.P1522S 0.28 possibly_damaging(0.804) TCGA-95-7947-01 12 66765480 66765480 C T GRIP1 Silent p.L950L 0.26 TCGA-95-7947-01 12 6978853 6978853 T C TPI1 Silent p.D190D 0.32 TCGA-95-7947-01 12 7015087 7015087 C G LRRC23 Missense_Mutation p.H69D 0.29 deleterious(0) probably_damaging(0.99) TCGA-95-7947-01 12 72167776 72167776 G T RAB21 Missense_Mutation p.G122V 0.26 deleterious(0) probably_damaging(0.997) TCGA-95-7947-01 12 7480967 7480967 T C ACSM4 Nonstop_Mutation p.*581Qext*17 0.31 TCGA-95-7947-01 12 77426850 77426850 C T E2F7 Silent p.Q454Q 0.40 TCGA-95-7947-01 12 8211415 8211415 G C C3AR1 Missense_Mutation p.A456G 0.38 tolerated(0.3) benign(0.022) TCGA-95-7947-01 12 89918168 89918168 C T GALNT4 Silent p.Q53Q 0.45 TCGA-95-7947-01 12 94642146 94642146 C G PLXNC1 Missense_Mutation p.I912M 0.42 tolerated(0.24) benign(0.243) TCGA-95-7947-01 13 101714406 101714406 C G NALCN Missense_Mutation p.E1557Q 0.31 deleterious(0) probably_damaging(0.925) TCGA-95-7947-01 13 111160490 111160490 G T COL4A2 Silent p.A1601A 0.31 TCGA-95-7947-01 13 25480420 25480420 C G CENPJ Missense_Mutation p.D586H 0.53 deleterious(0) probably_damaging(0.973) TCGA-95-7947-01 13 35926326 35926326 A C NBEA Missense_Mutation p.R2015S 0.50 deleterious(0) possibly_damaging(0.515) TCGA-95-7947-01 13 48934258 48934259 - A RB1 Frame_Shift_Ins p.Y239Ifs*2 0.23 TCGA-95-7947-01 13 73345239 73345239 G A DIS3 Silent p.S550S 0.38 TCGA-95-7947-01 13 78477365 78477365 T C EDNRB Missense_Mutation p.I333V 0.33 tolerated(0.63) benign(0.005) TCGA-95-7947-01 13 79233246 79233246 T C RNF219 Missense_Mutation p.T4A 0.39 tolerated(0.21) benign(0.037) TCGA-95-7947-01 13 84453917 84453917 C A SLITRK1 Nonsense_Mutation p.E576* 0.22 TCGA-95-7947-01 14 21490336 21490336 A C NDRG2 Missense_Mutation p.S77A 0.36 tolerated(0.1) benign(0.21) TCGA-95-7947-01 14 21499323 21499323 C T TPPP2 Missense_Mutation p.T109I 0.33 deleterious(0.03) benign(0.066) TCGA-95-7947-01 14 22337432 22337432 G T TRAV13-1 Nonsense_Mutation p.E75* 0.34 TCGA-95-7947-01 14 22928101 22928101 C T TRDJ3 Missense_Mutation p.T5I 0.45 unknown(0) TCGA-95-7947-01 14 23341964 23341964 C G LRP10 Missense_Mutation p.P18A 0.38 tolerated(0.26) benign(0.02) TCGA-95-7947-01 14 23842197 23842197 G T IL25 5'UTR 0.26 TCGA-95-7947-01 14 24517419 24517419 G C LRRC16B 5'Flank 0.21 TCGA-95-7947-01 14 24617533 24617533 G A RNF31 Missense_Mutation p.E136K 0.25 deleterious(0.01) possibly_damaging(0.653) TCGA-95-7947-01 14 24656911 24656911 G A IPO4 Nonsense_Mutation p.Q124* 0.30 TCGA-95-7947-01 14 33015051 33015051 G T AKAP6 Nonsense_Mutation p.E398* 0.25 TCGA-95-7947-01 14 33290675 33290675 G A AKAP6 Nonsense_Mutation p.W1219* 0.27 TCGA-95-7947-01 14 34247779 34247779 G T NPAS3 Splice_Site p.X385_splice 0.32 TCGA-95-7947-01 14 35240752 35240752 T A BAZ1A Missense_Mutation p.Q1089L 0.27 deleterious(0) possibly_damaging(0.775) TCGA-95-7947-01 14 45481238 45481238 G - FAM179B Frame_Shift_Del p.I1069Ffs*36 0.09 TCGA-95-7947-01 14 45481238 45481238 G A FAM179B Silent p.K1066K 0.17 TCGA-95-7947-01 14 47351289 47351289 A T MDGA2 Missense_Mutation p.F792I 0.30 deleterious(0) possibly_damaging(0.837) TCGA-95-7947-01 14 53138391 53138391 C A ERO1L Missense_Mutation p.W155C 0.20 deleterious(0) probably_damaging(0.997) TCGA-95-7947-01 14 57082682 57082682 G C TMEM260 Missense_Mutation p.R293T 0.33 tolerated(0.4) benign(0.014) TCGA-95-7947-01 14 58954712 58954712 A G KIAA0586 Missense_Mutation p.I1191V 0.22 tolerated(0.38) benign(0.003) TCGA-95-7947-01 14 63735881 63735881 G T RHOJ Nonsense_Mutation p.G78* 0.21 TCGA-95-7947-01 14 63735882 63735882 G T RHOJ Missense_Mutation p.G78V 0.21 deleterious(0) probably_damaging(0.961) TCGA-95-7947-01 14 64447432 64447432 G C SYNE2 Missense_Mutation p.E544Q 0.20 probably_damaging(0.999) TCGA-95-7947-01 14 65240051 65240051 T A SPTB Missense_Mutation p.M1689L 0.31 tolerated(0.74) benign(0.002) TCGA-95-7947-01 14 65253478 65253478 C T SPTB Missense_Mutation p.D1069N 0.36 deleterious(0.03) benign(0.037) TCGA-95-7947-01 14 68220796 68220796 C T ZFYVE26 Missense_Mutation p.A2374T 0.23 deleterious(0) probably_damaging(0.996) TCGA-95-7947-01 14 70170113 70170113 G T KIAA0247 Silent p.V41V 0.25 TCGA-95-7947-01 14 70170115 70170115 G T KIAA0247 Missense_Mutation p.C42F 0.25 deleterious(0) probably_damaging(1) TCGA-95-7947-01 14 75131573 75131573 A G AREL1 Missense_Mutation p.V720A 0.29 tolerated(0.18) probably_damaging(0.992) TCGA-95-7947-01 14 76638254 76638254 C T GPATCH2L Silent p.L266L 0.32 TCGA-95-7947-01 14 81209499 81209499 T A CEP128 Missense_Mutation p.K909M 0.30 deleterious(0) probably_damaging(0.992) TCGA-95-7947-01 14 90650453 90650453 A G KCNK13 Splice_Site p.X112_splice 0.28 TCGA-95-7947-01 14 95562743 95562743 G A DICER1 Missense_Mutation p.S1505F 0.31 deleterious(0) probably_damaging(0.922) TCGA-95-7947-01 14 96180344 96180344 G T TCL1A Silent p.A20A 0.34 TCGA-95-7947-01 14 96180345 96180345 G T TCL1A Missense_Mutation p.A20D 0.33 deleterious(0) possibly_damaging(0.593) TCGA-95-7947-01 15 101031128 101031129 - C CERS3 Frame_Shift_Ins p.A61Gfs*11 0.24 TCGA-95-7947-01 15 28369251 28369251 C A HERC2 Missense_Mutation p.D4374Y 0.29 benign(0.251) TCGA-95-7947-01 15 33878235 33878235 G T RYR3 Missense_Mutation p.S569I 0.38 probably_damaging(0.999) TCGA-95-7947-01 15 44106739 44106739 C T MFAP1 Missense_Mutation p.D193N 0.35 deleterious(0.01) possibly_damaging(0.822) TCGA-95-7947-01 15 55964742 55964742 T A PRTG Missense_Mutation p.I648F 0.31 deleterious(0) possibly_damaging(0.678) TCGA-95-7947-01 15 59193471 59193471 C A SLTM Nonsense_Mutation p.E193* 0.36 TCGA-95-7947-01 15 62539502 62539502 C T AC126323.1 5'Flank 0.29 TCGA-95-7947-01 15 65108962 65108962 G T PIF1 Silent p.G559G 0.25 TCGA-95-7947-01 15 65411716 65411716 G A PDCD7 Silent p.I444I 0.33 TCGA-95-7947-01 15 73048727 73048727 G A ADPGK Silent p.L235L 0.37 TCGA-95-7947-01 15 73852120 73852120 C T C15orf60 Missense_Mutation p.H222Y 0.28 tolerated(0.28) benign(0.003) TCGA-95-7947-01 15 75500696 75500696 A G C15orf39 Silent p.G769G 0.20 TCGA-95-7947-01 15 83349890 83349890 C G AP3B2 Missense_Mutation p.E188Q 0.28 deleterious(0.03) benign(0.262) TCGA-95-7947-01 15 84527563 84527563 G A ADAMTSL3 Missense_Mutation p.R258K 0.30 tolerated(0.05) probably_damaging(0.967) TCGA-95-7947-01 15 89169692 89169692 G C AEN Silent p.L84L 0.18 TCGA-95-7947-01 15 90771953 90771953 G T SEMA4B 3'UTR 0.38 TCGA-95-7947-01 16 1129519 1129519 C T SSTR5 Silent p.I217I 0.22 TCGA-95-7947-01 16 14026137 14026137 G T ERCC4 Missense_Mutation p.G366V 0.47 tolerated(0.28) benign(0.001) TCGA-95-7947-01 16 1536191 1536191 G A PTX4 Missense_Mutation p.P391S 0.19 deleterious(0.01) possibly_damaging(0.779) TCGA-95-7947-01 16 18535853 18535853 C G NOMO2 Missense_Mutation p.R639P 0.23 tolerated(0.18) possibly_damaging(0.659) TCGA-95-7947-01 16 18826800 18826800 G T SMG1 Silent p.I3492I 0.04 TCGA-95-7947-01 16 19508440 19508440 C G TMC5 Intron 0.48 TCGA-95-7947-01 16 19883904 19883904 C G GPRC5B Missense_Mutation p.E88D 0.14 tolerated(0.16) probably_damaging(0.997) TCGA-95-7947-01 16 20435296 20435296 G T ACSM5 Missense_Mutation p.V276L 0.50 tolerated(0.09) possibly_damaging(0.596) TCGA-95-7947-01 16 21139082 21139082 C A DNAH3 Missense_Mutation p.L378F 0.46 tolerated(0.73) benign(0.016) TCGA-95-7947-01 16 24373034 24373034 C A CACNG3 Silent p.T266T 0.45 TCGA-95-7947-01 16 25175941 25175941 G C LCMT1 Missense_Mutation p.E198Q 0.50 deleterious(0) probably_damaging(0.997) TCGA-95-7947-01 16 2752431 2752431 G T KCTD5 Silent p.L209L 0.20 TCGA-95-7947-01 16 27765513 27765513 C T KIAA0556 Missense_Mutation p.P1191L 0.49 tolerated(0.12) benign(0.266) TCGA-95-7947-01 16 30537139 30537139 C A ZNF768 Missense_Mutation p.D108Y 0.23 deleterious_low_confidence(0) benign(0.042) TCGA-95-7947-01 16 31150446 31150446 G A PRSS36 3'UTR 0.20 TCGA-95-7947-01 16 31340616 31340616 C T ITGAM Nonsense_Mutation p.Q955* 0.65 TCGA-95-7947-01 16 32894000 32894000 T A RP11-989E6.3 5'Flank 0.09 TCGA-95-7947-01 16 335387 335387 C A PDIA2 Silent p.R291R 0.43 TCGA-95-7947-01 16 3544590 3544590 G T C16orf90 Missense_Mutation p.P112T 0.51 deleterious_low_confidence(0.01) benign(0.038) TCGA-95-7947-01 16 4511769 4511769 G A NMRAL1 3'UTR 0.28 TCGA-95-7947-01 16 51175993 51175993 C A SALL1 Missense_Mutation p.R47L 0.52 deleterious(0) probably_damaging(0.998) TCGA-95-7947-01 16 77389862 77389862 G A ADAMTS18 Missense_Mutation p.R479C 0.33 deleterious(0) probably_damaging(0.998) TCGA-95-7947-01 16 81272546 81272546 A G BCMO1 Silent p.E11E 0.29 TCGA-95-7947-01 16 8722634 8722634 G A METTL22 Missense_Mutation p.D61N 0.26 deleterious(0.01) benign(0.374) TCGA-95-7947-01 16 89351075 89351075 C T ANKRD11 Silent p.E625E 0.28 TCGA-95-7947-01 17 10428230 10428230 G C MYH2 Missense_Mutation p.S1605R 0.51 deleterious(0.04) benign(0.018) TCGA-95-7947-01 17 18023816 18023816 C T MYO15A Missense_Mutation p.P568S 0.46 possibly_damaging(0.641) TCGA-95-7947-01 17 18927649 18927649 C T GRAP Missense_Mutation p.G116E 0.32 deleterious(0) probably_damaging(1) TCGA-95-7947-01 17 19645475 19645475 G C ALDH3A1 Silent p.L177L 0.28 TCGA-95-7947-01 17 19687055 19687055 G A ULK2 Silent p.L805L 0.64 TCGA-95-7947-01 17 26723394 26723394 G A SARM1 3'UTR 0.42 TCGA-95-7947-01 17 33520613 33520613 G T SLC35G3 Silent p.L238L 0.27 TCGA-95-7947-01 17 33521035 33521035 G C SLC35G3 Missense_Mutation p.P98A 0.35 tolerated(0.22) benign(0.083) TCGA-95-7947-01 17 3477008 3477008 G A SHPK Silent p.L674L 0.48 TCGA-95-7947-01 17 34883390 34883390 G C MYO19 Missense_Mutation p.Q98E 0.24 tolerated(0.22) benign(0.032) TCGA-95-7947-01 17 36895085 36895085 C T PCGF2 Missense_Mutation p.E116K 0.12 tolerated(0.05) benign(0.362) TCGA-95-7947-01 17 38240976 38240976 C G THRA Missense_Mutation p.P162A 0.29 tolerated(0.13) benign(0) TCGA-95-7947-01 17 38907553 38907553 G T KRT25 Missense_Mutation p.A232D 0.59 deleterious(0.01) probably_damaging(1) TCGA-95-7947-01 17 39279911 39279911 C A KRTAP4-12 Missense_Mutation p.C155F 0.06 deleterious(0) unknown(0) TCGA-95-7947-01 17 40844610 40844610 G A CNTNAP1 Nonsense_Mutation p.W875* 0.62 TCGA-95-7947-01 17 48917367 48917367 G A WFIKKN2 Missense_Mutation p.E240K 0.34 tolerated(0.1) possibly_damaging(0.458) TCGA-95-7947-01 17 56060700 56060700 G C VEZF1 Missense_Mutation p.L30V 0.18 tolerated(0.17) probably_damaging(0.978) TCGA-95-7947-01 17 56280473 56280473 C T EPX Silent p.L580L 0.39 TCGA-95-7947-01 17 56356990 56356990 G T MPO Missense_Mutation p.Q148K 0.62 deleterious(0.02) possibly_damaging(0.78) TCGA-95-7947-01 17 57684443 57684443 C A DHX40 Missense_Mutation p.D750E 0.26 tolerated_low_confidence(0.66) benign(0.004) TCGA-95-7947-01 17 6683381 6683381 G T FBXO39 Missense_Mutation p.G65V 0.53 deleterious(0) probably_damaging(0.997) TCGA-95-7947-01 17 68171623 68171623 G T KCNJ2 Missense_Mutation p.R148I 0.70 deleterious(0) probably_damaging(1) TCGA-95-7947-01 17 72249298 72249298 G A TTYH2 Silent p.P446P 0.06 TCGA-95-7947-01 17 73492070 73492070 A G KIAA0195 Missense_Mutation p.M990V 0.63 deleterious(0) probably_damaging(0.956) TCGA-95-7947-01 17 7578235 7578235 T C TP53 Missense_Mutation p.Y205C 0.33 deleterious(0) probably_damaging(0.99) TCGA-95-7947-01 17 7977019 7977019 T C ALOX12B Missense_Mutation p.I571V 0.45 tolerated(0.06) benign(0.164) TCGA-95-7947-01 18 265526 265526 G C THOC1 Missense_Mutation p.S20C 0.17 tolerated(0.2) possibly_damaging(0.518) TCGA-95-7947-01 18 28993456 28993456 G A DSG4 Missense_Mutation p.M1026I 0.11 tolerated(0.13) benign(0.002) TCGA-95-7947-01 18 39637886 39637886 G T PIK3C3 Missense_Mutation p.R768L 0.37 deleterious(0) probably_damaging(0.999) TCGA-95-7947-01 18 47091756 47091756 C G LIPG Missense_Mutation p.S56C 0.40 tolerated(0.1) probably_damaging(0.969) TCGA-95-7947-01 18 70532834 70532834 T G NETO1 Intron 0.25 TCGA-95-7947-01 18 72343820 72343820 A G ZNF407 Missense_Mutation p.Q282R 0.52 deleterious(0.04) possibly_damaging(0.68) TCGA-95-7947-01 18 74962762 74962762 C G GALR1 Silent p.L86L 0.56 TCGA-95-7947-01 18 8819032 8819032 C T SOGA2 Silent p.P977P 0.29 TCGA-95-7947-01 19 10610405 10610405 G A KEAP1 Missense_Mutation p.S102L 0.42 deleterious(0.01) probably_damaging(0.981) TCGA-95-7947-01 19 10692432 10692432 G A AP1M2 Silent p.I130I 0.34 TCGA-95-7947-01 19 1079762 1079762 G A HMHA1 Missense_Mutation p.E495K 0.38 deleterious(0) possibly_damaging(0.733) TCGA-95-7947-01 19 11347230 11347230 G A DOCK6 Silent p.F728F 0.22 TCGA-95-7947-01 19 12061267 12061267 C G ZNF700 3'UTR 0.47 TCGA-95-7947-01 19 17488060 17488060 C G PLVAP Missense_Mutation p.R13P 0.26 deleterious(0) probably_damaging(0.988) TCGA-95-7947-01 19 17488061 17488061 G A PLVAP Missense_Mutation p.R13W 0.26 deleterious(0) probably_damaging(0.996) TCGA-95-7947-01 19 18331046 18331046 C A PDE4C Silent p.R264R 0.29 TCGA-95-7947-01 19 18561707 18561707 G A ELL Nonsense_Mutation p.Q349* 0.18 TCGA-95-7947-01 19 18974407 18974407 A G UPF1 Missense_Mutation p.N921D 0.35 tolerated(0.06) benign(0.013) TCGA-95-7947-01 19 20026089 20026089 G T ZNF93 Nonsense_Mutation p.G2* 0.21 TCGA-95-7947-01 19 23542380 23542380 T A ZNF91 Missense_Mutation p.Y1134F 0.30 tolerated(0.06) possibly_damaging(0.9) TCGA-95-7947-01 19 23836495 23836495 G A ZNF675 Missense_Mutation p.H414Y 0.31 deleterious(0) probably_damaging(0.991) TCGA-95-7947-01 19 30313407 30313407 T C CCNE1 Missense_Mutation p.M336T 0.36 tolerated(0.35) benign(0.015) TCGA-95-7947-01 19 31039132 31039132 A T ZNF536 Missense_Mutation p.H869L 0.28 tolerated(0.33) benign(0.021) TCGA-95-7947-01 19 35251243 35251243 C T ZNF599 Missense_Mutation p.D155N 0.28 tolerated(0.24) benign(0.001) TCGA-95-7947-01 19 35556566 35556566 G A HPN Missense_Mutation p.G344D 0.05 deleterious(0) probably_damaging(1) TCGA-95-7947-01 19 35823807 35823807 G C CD22 Missense_Mutation p.R131P 0.29 tolerated(0.35) benign(0.002) TCGA-95-7947-01 19 39876822 39876822 C T PAF1 Missense_Mutation p.E469K 0.36 tolerated_low_confidence(0.26) unknown(0) TCGA-95-7947-01 19 40199894 40199894 G A LGALS14 Missense_Mutation p.V150M 0.20 deleterious(0) probably_damaging(0.998) TCGA-95-7947-01 19 40433429 40433429 A G FCGBP Silent p.H280H 0.30 TCGA-95-7947-01 19 40885612 40885612 C A HIPK4 Missense_Mutation p.C578F 0.19 deleterious_low_confidence(0) benign(0.021) TCGA-95-7947-01 19 41778021 41778021 C T HNRNPUL1 Silent p.T151T 0.35 TCGA-95-7947-01 19 41860592 41860592 G C B9D2 3'UTR 0.35 TCGA-95-7947-01 19 42818843 42818843 G T TMEM145 Missense_Mutation p.G118C 0.37 deleterious(0) probably_damaging(0.998) TCGA-95-7947-01 19 44570323 44570323 T C ZNF223 Silent p.P114P 0.21 TCGA-95-7947-01 19 4529859 4529859 G A PLIN5 Silent p.L92L 0.30 TCGA-95-7947-01 19 47197300 47197300 C G PRKD2 Missense_Mutation p.V470L 0.30 tolerated(0.72) benign(0.039) TCGA-95-7947-01 19 47986462 47986462 C T KPTN Silent p.L135L 0.31 TCGA-95-7947-01 19 49004250 49004250 C T LMTK3 Intron 0.24 TCGA-95-7947-01 19 50128901 50128901 G T PRR12 3'UTR 0.36 TCGA-95-7947-01 19 50373285 50373285 C T AKT1S1 Silent p.A240A 0.39 TCGA-95-7947-01 19 50498136 50498136 C A VRK3 Missense_Mutation p.A269S 0.28 deleterious(0.02) probably_damaging(0.919) TCGA-95-7947-01 19 51471425 51471425 T C KLK6 Intron 0.06 TCGA-95-7947-01 19 51983826 51983826 G T CEACAM18 Missense_Mutation p.G159C 0.24 deleterious(0) probably_damaging(1) TCGA-95-7947-01 19 52909814 52909814 G A ZNF528 Silent p.K63K 0.31 TCGA-95-7947-01 19 53885501 53885502 GG - ZNF525 3'UTR 0.17 TCGA-95-7947-01 19 53911769 53911769 C T ZNF765 Missense_Mutation p.H321Y 0.24 deleterious(0.01) probably_damaging(0.994) TCGA-95-7947-01 19 54313954 54313954 G T NLRP12 Missense_Mutation p.T320K 0.44 tolerated(0.15) possibly_damaging(0.878) TCGA-95-7947-01 19 54754627 54754627 A G LILRB5 3'UTR 0.33 TCGA-95-7947-01 19 55021737 55021737 G A LAIR2 Silent p.G139G 0.21 TCGA-95-7947-01 19 55446005 55446005 G T NLRP7 Missense_Mutation p.P775T 0.33 tolerated(1) benign(0) TCGA-95-7947-01 19 55816287 55816287 G T BRSK1 Missense_Mutation p.Q572H 0.29 tolerated(0.05) probably_damaging(0.991) TCGA-95-7947-01 19 56244602 56244602 G T NLRP9 Missense_Mutation p.L199M 0.29 tolerated(0.08) possibly_damaging(0.761) TCGA-95-7947-01 19 6475302 6475302 C T DENND1C Missense_Mutation p.A346T 0.27 deleterious(0) probably_damaging(0.99) TCGA-95-7947-01 19 6590912 6590912 G C CD70 Silent p.L34L 0.21 TCGA-95-7947-01 19 814446 814446 G T LPPR3 Silent p.I301I 0.32 TCGA-95-7947-01 19 8969281 8969281 C A MUC16 Missense_Mutation p.D14355Y 0.34 possibly_damaging(0.598) TCGA-95-7947-01 19 8994195 8994195 G A MUC16 Silent p.F13830F 0.33 TCGA-95-7947-01 19 9049135 9049135 G A MUC16 Silent p.S10832S 0.32 TCGA-95-7947-01 19 9062050 9062050 G C MUC16 Missense_Mutation p.Q8466E 0.27 unknown(0) TCGA-95-7947-01 19 917741 917741 A G KISS1R Missense_Mutation p.Y80C 0.21 deleterious(0) probably_damaging(0.983) TCGA-95-7947-01 1 101186295 101186295 G T VCAM1 Missense_Mutation p.V110L 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-95-7947-01 1 103404613 103404613 C T COL11A1 Missense_Mutation p.S1139N 0.32 unknown(0) TCGA-95-7947-01 1 104120463 104120463 G T AMY2B Missense_Mutation p.D448Y 0.34 tolerated(0.08) probably_damaging(0.991) TCGA-95-7947-01 1 111986713 111986713 G A WDR77 Missense_Mutation p.S176F 0.15 deleterious(0.03) probably_damaging(0.98) TCGA-95-7947-01 1 12252977 12252977 G T TNFRSF1B Silent p.T203T 0.28 TCGA-95-7947-01 1 145115793 145115793 G A SEC22B RNA 0.09 TCGA-95-7947-01 1 147084819 147084819 G T BCL9 Missense_Mutation p.C64F 0.19 deleterious(0) probably_damaging(0.946) TCGA-95-7947-01 1 151318730 151318730 C G RFX5 Missense_Mutation p.E23Q 0.47 tolerated(0.08) possibly_damaging(0.762) TCGA-95-7947-01 1 152186839 152186839 G T HRNR Silent p.G2422G 0.10 TCGA-95-7947-01 1 152324674 152324674 C G FLG2 Missense_Mutation p.G1863A 0.45 probably_damaging(0.984) TCGA-95-7947-01 1 153789011 153789011 C T GATAD2B Missense_Mutation p.M318I 0.47 tolerated(0.34) possibly_damaging(0.885) TCGA-95-7947-01 1 156039991 156040025 CCGGACCAATGCCATCACTCTGGGCAGTGCCCAGG - RAB25 Frame_Shift_Del p.R186Wfs*80 0.14 TCGA-95-7947-01 1 157555986 157555986 C A FCRL4 Missense_Mutation p.Q369H 0.21 tolerated(0.52) benign(0.293) TCGA-95-7947-01 1 157803231 157803231 C G CD5L Missense_Mutation p.V264L 0.18 tolerated(0.31) benign(0.027) TCGA-95-7947-01 1 158368962 158368962 C T OR10T2 Missense_Mutation p.A99T 0.43 deleterious(0.03) possibly_damaging(0.813) TCGA-95-7947-01 1 158517795 158517795 G A OR6Y1 Missense_Mutation p.S34F 0.53 tolerated(0.68) benign(0.001) TCGA-95-7947-01 1 158946623 158946623 G A PYHIN1 3'UTR 0.24 TCGA-95-7947-01 1 159170669 159170669 G A CADM3 Missense_Mutation p.G419D 0.40 deleterious(0.03) probably_damaging(1) TCGA-95-7947-01 1 159803054 159803054 C A SLAMF8 Missense_Mutation p.P226T 0.47 deleterious(0.01) benign(0.146) TCGA-95-7947-01 1 159850455 159850455 C A CCDC19 Missense_Mutation p.M311I 0.18 tolerated(0.68) benign(0.01) TCGA-95-7947-01 1 160064708 160064708 G A IGSF8 Silent p.S131S 0.22 TCGA-95-7947-01 1 161024435 161024435 C T ARHGAP30 Missense_Mutation p.E136K 0.21 deleterious(0.02) probably_damaging(0.934) TCGA-95-7947-01 1 163298026 163298026 G C NUF2 Silent p.V69V 0.50 TCGA-95-7947-01 1 170967360 170967360 T A MROH9 Missense_Mutation p.V514E 0.19 tolerated(0.21) probably_damaging(0.986) TCGA-95-7947-01 1 172579007 172579007 G C SUCO Missense_Mutation p.E1125Q 0.53 tolerated(0.08) benign(0.091) TCGA-95-7947-01 1 175332847 175332847 G T TNR Missense_Mutation p.Q902K 0.29 tolerated(0.38) benign(0.004) TCGA-95-7947-01 1 176659359 176659359 T C PAPPA2 Missense_Mutation p.Y742H 0.27 deleterious(0.03) probably_damaging(1) TCGA-95-7947-01 1 177199193 177199193 G T BRINP2 Missense_Mutation p.D61Y 0.26 deleterious(0) probably_damaging(0.927) TCGA-95-7947-01 1 177902413 177902413 G A SEC16B Missense_Mutation p.S920L 0.55 deleterious(0.03) benign(0.027) TCGA-95-7947-01 1 185143850 185143850 A T SWT1 Missense_Mutation p.N191Y 0.53 tolerated(1) benign(0.002) TCGA-95-7947-01 1 197057405 197057406 TT A ASPM Frame_Shift_Del p.K3381* 0.31 TCGA-95-7947-01 1 200080447 200080447 C A NR5A2 Missense_Mutation p.Q410K 0.18 tolerated(0.62) benign(0.002) TCGA-95-7947-01 1 211529722 211529722 A G TRAF5 Missense_Mutation p.N97S 0.39 tolerated(0.07) possibly_damaging(0.844) TCGA-95-7947-01 1 215848206 215848206 G T USH2A Silent p.I4349I 0.50 TCGA-95-7947-01 1 216062108 216062108 G T USH2A Missense_Mutation p.P2628Q 0.53 possibly_damaging(0.547) TCGA-95-7947-01 1 216246500 216246500 G A USH2A Silent p.S1905S 0.41 TCGA-95-7947-01 1 222923449 222923449 C T FAM177B 3'UTR 0.17 TCGA-95-7947-01 1 225976981 225976981 A G SRP9 Missense_Mutation p.K61E 0.53 deleterious(0) probably_damaging(0.99) TCGA-95-7947-01 1 226076613 226076613 C A LEFTY1 Missense_Mutation p.V52F 0.10 deleterious(0) possibly_damaging(0.765) TCGA-95-7947-01 1 232577108 232577108 G A SIPA1L2 Silent p.L1191L 0.24 TCGA-95-7947-01 1 234546274 234546274 C T TARBP1 Missense_Mutation p.E1237K 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-95-7947-01 1 235324524 235324524 C T RBM34 Missense_Mutation p.M6I 0.38 deleterious_low_confidence(0.03) benign(0.065) TCGA-95-7947-01 1 237780642 237780642 C A RYR2 Silent p.A1924A 0.20 TCGA-95-7947-01 1 238090711 238090711 C A RP11-193H5.1 RNA 0.41 TCGA-95-7947-01 1 246784876 246784876 A G CNST Silent p.S175S 0.23 TCGA-95-7947-01 1 247752236 247752236 G T OR2G2 Missense_Mutation p.C192F 0.40 deleterious(0) probably_damaging(1) TCGA-95-7947-01 1 248512673 248512673 C A OR14C36 Silent p.V199V 0.23 TCGA-95-7947-01 1 25549784 25549784 C G SYF2 Missense_Mutation p.Q235H 0.26 deleterious(0.01) probably_damaging(0.977) TCGA-95-7947-01 1 33237907 33237907 C G KIAA1522 Missense_Mutation p.R1043G 0.19 tolerated_low_confidence(0.27) probably_damaging(0.961) TCGA-95-7947-01 1 34190196 34190196 C G CSMD2 Silent p.S895S 0.26 TCGA-95-7947-01 1 34190197 34190197 G A CSMD2 Missense_Mutation p.S895L 0.26 deleterious(0.01) benign(0.036) TCGA-95-7947-01 1 36939405 36939405 C G CSF3R Missense_Mutation p.E149Q 0.26 deleterious(0.01) benign(0.227) TCGA-95-7947-01 1 37947399 37947399 G A ZC3H12A Missense_Mutation p.E261K 0.39 deleterious(0) probably_damaging(0.996) TCGA-95-7947-01 1 38061441 38061441 G A GNL2 5'UTR 0.24 TCGA-95-7947-01 1 39888568 39888568 A C MACF1 Missense_Mutation p.Q3320P 0.30 probably_damaging(0.991) TCGA-95-7947-01 1 40713748 40713749 - T TMCO2 Frame_Shift_Ins p.L30Ffs*5 0.20 TCGA-95-7947-01 1 46085982 46085982 G A CCDC17 Missense_Mutation p.H612Y 0.21 tolerated_low_confidence(0.06) benign(0.055) TCGA-95-7947-01 1 54060371 54060371 C A GLIS1 Missense_Mutation p.G69C 0.27 deleterious_low_confidence(0.05) probably_damaging(1) TCGA-95-7947-01 1 55307302 55307302 T C C1orf177 Intron 0.33 TCGA-95-7947-01 1 6186638 6186638 C A CHD5 Missense_Mutation p.D1358Y 0.37 deleterious(0) probably_damaging(0.996) TCGA-95-7947-01 1 67635043 67635043 G T IL23R Missense_Mutation p.C30F 0.24 deleterious(0) probably_damaging(0.919) TCGA-95-7947-01 1 68512795 68512795 G A DIRAS3 Silent p.F62F 0.29 TCGA-95-7947-01 1 75037590 75037590 T A C1orf173 Silent p.L1268L 0.32 TCGA-95-7947-01 1 82450289 82450289 G C LPHN2 Missense_Mutation p.C1085S 0.29 deleterious(0.02) benign(0.12) TCGA-95-7947-01 1 86959282 86959282 G C CLCA1 Missense_Mutation p.K560N 0.44 deleterious(0) probably_damaging(0.917) TCGA-95-7947-01 1 90478797 90478797 G T ZNF326 Splice_Site p.X309_splice 0.48 TCGA-95-7947-01 1 95290143 95290143 C A SLC44A3 Missense_Mutation p.S77Y 0.27 deleterious(0.01) possibly_damaging(0.691) TCGA-95-7947-01 1 9790694 9790694 C T CLSTN1 Missense_Mutation p.E940K 0.31 tolerated(0.1) benign(0.194) TCGA-95-7947-01 20 10639247 10639247 T C JAG1 Missense_Mutation p.D188G 0.30 deleterious(0.03) benign(0.279) TCGA-95-7947-01 20 1456860 1456860 G A SIRPB2 Silent p.G327G 0.27 TCGA-95-7947-01 20 14665577 14665577 C G MACROD2 Missense_Mutation p.I130M 0.33 deleterious(0.02) probably_damaging(0.985) TCGA-95-7947-01 20 1616208 1616208 C A SIRPG Missense_Mutation p.R262S 0.38 tolerated(0.76) benign(0.036) TCGA-95-7947-01 20 18165313 18165313 C G CSRP2BP Missense_Mutation p.I684M 0.26 deleterious(0) possibly_damaging(0.549) TCGA-95-7947-01 20 25667172 25667172 T C ZNF337 5'UTR 0.27 TCGA-95-7947-01 20 257404 257404 C A C20orf96 Intron 0.63 TCGA-95-7947-01 20 29632695 29632695 A T FRG1B Silent p.G170G 0.03 TCGA-95-7947-01 20 31647283 31647283 C T BPIFB3 Silent p.C127C 0.19 TCGA-95-7947-01 20 31647285 31647285 C G BPIFB3 Missense_Mutation p.S128C 0.20 deleterious(0.03) probably_damaging(0.983) TCGA-95-7947-01 20 32264541 32264541 G C E2F1 Missense_Mutation p.F437L 0.35 tolerated(0.16) benign(0.115) TCGA-95-7947-01 20 33588488 33588488 C T MYH7B Missense_Mutation p.S1767L 0.36 benign(0.239) TCGA-95-7947-01 20 36625251 36625251 G A TTI1 Silent p.I966I 0.27 TCGA-95-7947-01 20 44049006 44049006 C T PIGT Silent p.L268L 0.53 TCGA-95-7947-01 20 45188658 45188658 G A SLC13A3 3'UTR 0.07 TCGA-95-7947-01 20 46290572 46290572 C T SULF2 Silent p.L813L 0.18 TCGA-95-7947-01 20 47835954 47835954 T G DDX27 Missense_Mutation p.V21G 0.34 tolerated_low_confidence(0.05) benign(0) TCGA-95-7947-01 20 47990541 47990541 G A KCNB1 Missense_Mutation p.S519F 0.48 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-95-7947-01 20 48330195 48330195 C A B4GALT5 Silent p.P11P 0.29 TCGA-95-7947-01 20 56728612 56728612 G A C20orf85 Silent p.L27L 0.49 TCGA-95-7947-01 20 61428022 61428022 C T MRGBP Silent p.V49V 0.40 TCGA-95-7947-01 20 61528345 61528345 G A DIDO1 Missense_Mutation p.T531M 0.38 benign(0.006) TCGA-95-7947-01 20 7866418 7866418 C A HAO1 Missense_Mutation p.A303S 0.33 deleterious(0.01) probably_damaging(1) TCGA-95-7947-01 21 19698834 19698834 C A TMPRSS15 Missense_Mutation p.M612I 0.34 tolerated(0.09) possibly_damaging(0.893) TCGA-95-7947-01 21 30435737 30435737 T A CCT8 Missense_Mutation p.T293S 0.36 tolerated(0.65) benign(0.006) TCGA-95-7947-01 21 31768547 31768547 T A KRTAP13-1 Missense_Mutation p.L48Q 0.28 deleterious(0.04) possibly_damaging(0.732) TCGA-95-7947-01 21 41151172 41151172 C T IGSF5 Missense_Mutation p.R292C 0.39 tolerated(0.2) benign(0.072) TCGA-95-7947-01 21 41450791 41450791 C G DSCAM Missense_Mutation p.E1512Q 0.32 deleterious(0.04) probably_damaging(0.925) TCGA-95-7947-01 21 41465712 41465712 C A DSCAM Silent p.V1262V 0.39 TCGA-95-7947-01 21 46032559 46032559 C T KRTAP10-8 Missense_Mutation p.S181F 0.27 deleterious(0.02) unknown(0) TCGA-95-7947-01 21 47361694 47361694 G C PCBP3 3'UTR 0.38 TCGA-95-7947-01 21 47678951 47678951 G A MCM3AP Silent p.V1212V 0.26 TCGA-95-7947-01 22 17072854 17072854 C - CCT8L2 Frame_Shift_Del p.G196Afs*27 0.46 TCGA-95-7947-01 22 22842707 22842707 C A ZNF280B Missense_Mutation p.W339C 0.70 deleterious(0) probably_damaging(0.992) TCGA-95-7947-01 22 22842708 22842708 C A ZNF280B Missense_Mutation p.W339L 0.71 deleterious(0.01) possibly_damaging(0.452) TCGA-95-7947-01 22 24898459 24898459 G A UPB1 Intron 0.65 TCGA-95-7947-01 22 36122339 36122339 C A APOL5 Missense_Mutation p.S75Y 0.63 tolerated(1) benign(0.004) TCGA-95-7947-01 22 38245581 38245581 C T EIF3L Intron 0.25 TCGA-95-7947-01 22 42473379 42473379 G C FAM109B Missense_Mutation p.G28R 0.63 tolerated(0.09) benign(0.224) TCGA-95-7947-01 22 42486834 42486834 G C NDUFA6 5'UTR 0.34 TCGA-95-7947-01 22 42525130 42525130 G A CYP2D6 Missense_Mutation p.S137F 0.26 deleterious(0.04) possibly_damaging(0.856) TCGA-95-7947-01 22 47022849 47022849 G C GRAMD4 Silent p.L51L 0.06 TCGA-95-7947-01 22 50667893 50667893 C G TUBGCP6 Silent p.L410L 0.28 TCGA-95-7947-01 22 50728234 50728234 C T PLXNB2 Silent p.L260L 0.40 TCGA-95-7947-01 2 103040355 103040355 A T IL18RAP Missense_Mutation p.Q52L 0.34 tolerated(0.15) benign(0.102) TCGA-95-7947-01 2 103149081 103149081 G T SLC9A4 Missense_Mutation p.W777C 0.20 deleterious(0.01) probably_damaging(0.962) TCGA-95-7947-01 2 1133490 1133490 G C SNTG2 Missense_Mutation p.E136Q 0.37 deleterious(0) probably_damaging(0.993) TCGA-95-7947-01 2 113514362 113514362 C G CKAP2L Missense_Mutation p.E196Q 0.23 tolerated(0.07) benign(0.167) TCGA-95-7947-01 2 127451438 127451438 A G GYPC Splice_Site p.X36_splice 0.25 TCGA-95-7947-01 2 135076221 135076221 T A MGAT5 Missense_Mutation p.W162R 0.26 deleterious(0) possibly_damaging(0.898) TCGA-95-7947-01 2 149226874 149226874 G T MBD5 Missense_Mutation p.E454D 0.40 deleterious(0) benign(0.388) TCGA-95-7947-01 2 158390463 158390463 A G ACVR1C Silent p.S483S 0.34 TCGA-95-7947-01 2 166903286 166903286 T C SCN1A Silent p.A457A 0.23 TCGA-95-7947-01 2 1684106 1684106 C T PXDN Missense_Mutation p.D197N 0.25 tolerated(0.23) benign(0.042) TCGA-95-7947-01 2 169869891 169869891 C G ABCB11 Missense_Mutation p.D94H 0.33 deleterious(0.01) probably_damaging(0.984) TCGA-95-7947-01 2 176948242 176948242 A G EVX2 Missense_Mutation p.V88A 0.24 tolerated(0.45) benign(0.001) TCGA-95-7947-01 2 177036264 177036264 G C HOXD3 Missense_Mutation p.K187N 0.35 deleterious(0.05) benign(0.005) TCGA-95-7947-01 2 179430662 179430662 C A TTN Missense_Mutation p.V26733L 0.27 TCGA-95-7947-01 2 179436378 179436378 A T TTN Silent p.T24827T 0.38 TCGA-95-7947-01 2 179642232 179642232 G T TTN Silent p.A1520A 0.23 TCGA-95-7947-01 2 192701335 192701335 G A SDPR Missense_Mutation p.H198Y 0.27 deleterious(0.01) possibly_damaging(0.751) TCGA-95-7947-01 2 201477456 201477456 A G AOX1 Missense_Mutation p.Y463C 0.27 deleterious(0) possibly_damaging(0.582) TCGA-95-7947-01 2 202319513 202319513 C A STRADB 5'UTR 0.35 TCGA-95-7947-01 2 204078335 204078335 G A NBEAL1 Missense_Mutation p.D2648N 0.33 deleterious(0.05) probably_damaging(0.999) TCGA-95-7947-01 2 207527684 207527684 C G DYTN Missense_Mutation p.E526Q 0.27 deleterious(0.03) possibly_damaging(0.849) TCGA-95-7947-01 2 21250865 21250865 A G APOB Silent p.S634S 0.31 TCGA-95-7947-01 2 216286823 216286823 G A FN1 Nonsense_Mutation p.Q513* 0.30 TCGA-95-7947-01 2 219299291 219299291 A G VIL1 Missense_Mutation p.T515A 0.27 tolerated(0.14) benign(0.004) TCGA-95-7947-01 2 219418306 219418306 C G USP37 Missense_Mutation p.D100H 0.30 deleterious(0) possibly_damaging(0.597) TCGA-95-7947-01 2 219870856 219870856 G A CCDC108 Silent p.C1603C 0.23 TCGA-95-7947-01 2 226446730 226446730 G C NYAP2 Silent p.P199P 0.34 TCGA-95-7947-01 2 233399876 233399876 G A CHRND Missense_Mutation p.D470N 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-95-7947-01 2 233421133 233421133 G A EIF4E2 Missense_Mutation p.D10N 0.19 deleterious(0.04) benign(0.017) TCGA-95-7947-01 2 242626193 242626193 C A DTYMK Silent p.A2A 0.29 TCGA-95-7947-01 2 25973043 25973043 G C ASXL2 Nonsense_Mutation p.S461* 0.37 TCGA-95-7947-01 2 27505683 27505683 C T TRIM54 Silent p.I28I 0.34 TCGA-95-7947-01 2 39552700 39552700 C A MAP4K3 Missense_Mutation p.D293Y 0.28 deleterious(0) probably_damaging(0.986) TCGA-95-7947-01 2 46808133 46808133 G T RHOQ Nonsense_Mutation p.E177* 0.31 TCGA-95-7947-01 2 61415551 61415551 T C USP34 Missense_Mutation p.R3443G 0.23 tolerated_low_confidence(0.22) benign(0.002) TCGA-95-7947-01 2 71576075 71576075 G A ZNF638 5'UTR 0.19 TCGA-95-7947-01 2 73676206 73676206 C G ALMS1 Missense_Mutation p.P850R 0.24 benign(0.049) TCGA-95-7947-01 2 73676340 73676340 C G ALMS1 Missense_Mutation p.Q895E 0.32 benign(0.122) TCGA-95-7947-01 2 73826634 73826634 A G ALMS1 Missense_Mutation p.K3884R 0.30 probably_damaging(0.999) TCGA-95-7947-01 2 89278144 89278144 G A IGKV3-7 Missense_Mutation p.A64V 0.20 tolerated(0.07) benign(0.086) TCGA-95-7947-01 2 95494780 95494780 T C ANKRD20A8P RNA 0.30 TCGA-95-7947-01 3 102187849 102187849 G A ZPLD1 Missense_Mutation p.R284Q 0.18 tolerated(0.26) benign(0.096) TCGA-95-7947-01 3 107798905 107798905 G C CD47 Missense_Mutation p.N111K 0.21 deleterious(0.03) probably_damaging(0.997) TCGA-95-7947-01 3 107798924 107798924 G C CD47 Missense_Mutation p.A105G 0.21 deleterious(0.02) benign(0.325) TCGA-95-7947-01 3 108129526 108129526 G C MYH15 Missense_Mutation p.Q1487E 0.16 deleterious(0.01) benign(0.124) TCGA-95-7947-01 3 108355516 108355516 G T DZIP3 Missense_Mutation p.R324S 0.24 tolerated(0.11) benign(0.34) TCGA-95-7947-01 3 111769520 111769520 T A TMPRSS7 Missense_Mutation p.C239S 0.24 tolerated(0.1) probably_damaging(0.999) TCGA-95-7947-01 3 112987214 112987214 G C BOC Missense_Mutation p.A149P 0.52 tolerated(0.23) possibly_damaging(0.574) TCGA-95-7947-01 3 113375045 113375045 G A KIAA2018 Silent p.L1828L 0.23 TCGA-95-7947-01 3 113775317 113775317 C T KIAA1407 5'UTR 0.21 TCGA-95-7947-01 3 11851124 11851124 C G TAMM41 Missense_Mutation p.Q247H 0.41 tolerated(0.9) benign(0.048) TCGA-95-7947-01 3 118623579 118623580 - A IGSF11 Frame_Shift_Ins p.C257Lfs*17 0.32 TCGA-95-7947-01 3 118867070 118867070 G C C3orf30 Missense_Mutation p.R481P 0.53 tolerated(0.23) benign(0.114) TCGA-95-7947-01 3 118909142 118909142 C T UPK1B Silent p.I107I 0.42 TCGA-95-7947-01 3 119180904 119180904 C G TMEM39A Missense_Mutation p.R6S 0.10 deleterious(0) probably_damaging(0.977) TCGA-95-7947-01 3 121264695 121264695 C T POLQ Silent p.R10R 0.20 TCGA-95-7947-01 3 121547718 121547718 C G IQCB1 Missense_Mutation p.L30F 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-95-7947-01 3 122003742 122003742 G A CASR Missense_Mutation p.E991K 0.19 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-95-7947-01 3 127649003 127649003 C T KBTBD12 Nonsense_Mutation p.R457* 0.20 TCGA-95-7947-01 3 128973901 128973901 C T COPG1 Missense_Mutation p.S158F 0.23 deleterious(0) benign(0.392) TCGA-95-7947-01 3 130284269 130284269 C A COL6A6 Missense_Mutation p.L365M 0.47 tolerated(1) benign(0.029) TCGA-95-7947-01 3 133362198 133362198 G C TOPBP1 Missense_Mutation p.Q623E 0.14 tolerated(0.55) benign(0.002) TCGA-95-7947-01 3 137850116 137850116 A T A4GNT 5'UTR 0.58 TCGA-95-7947-01 3 146307453 146307453 G C PLSCR5 Missense_Mutation p.A255G 0.20 deleterious(0) possibly_damaging(0.901) TCGA-95-7947-01 3 160960298 160960298 G T NMD3 Missense_Mutation p.A292S 0.43 tolerated(0.06) benign(0.327) TCGA-95-7947-01 3 164767629 164767629 G A SI Missense_Mutation p.S516L 0.15 deleterious(0) benign(0.215) TCGA-95-7947-01 3 172634193 172634193 C T SPATA16 Missense_Mutation p.E473K 0.41 deleterious(0) possibly_damaging(0.486) TCGA-95-7947-01 3 178928079 178928079 G C PIK3CA Missense_Mutation p.E453Q 0.51 tolerated(0.07) probably_damaging(0.928) TCGA-95-7947-01 3 179478938 179478938 G C USP13 Missense_Mutation p.E663Q 0.22 tolerated(0.19) possibly_damaging(0.858) TCGA-95-7947-01 3 180334372 180334372 C T CCDC39 Missense_Mutation p.E840K 0.54 tolerated(1) benign(0.001) TCGA-95-7947-01 3 180378460 180378460 C A CCDC39 Missense_Mutation p.W138C 0.50 tolerated(0.29) possibly_damaging(0.601) TCGA-95-7947-01 3 183898408 183898408 A C AP2M1 Intron 0.16 TCGA-95-7947-01 3 18419677 18419677 T G SATB1 Silent p.A520A 0.44 TCGA-95-7947-01 3 185245369 185245369 G C LIPH Silent p.L177L 0.53 TCGA-95-7947-01 3 36896758 36896758 G A TRANK1 Silent p.F1441F 0.45 TCGA-95-7947-01 3 39226540 39226540 C T XIRP1 Missense_Mutation p.R1466K 0.46 tolerated(0.7) benign(0.031) TCGA-95-7947-01 3 48688384 48688384 C A CELSR3 Missense_Mutation p.G2104V 0.55 deleterious(0) probably_damaging(1) TCGA-95-7947-01 3 50223354 50223354 C T SEMA3F Silent p.V540V 0.33 TCGA-95-7947-01 3 52130587 52130587 G C POC1A Missense_Mutation p.Q375E 0.50 tolerated(0.13) benign(0.098) TCGA-95-7947-01 3 64601146 64601146 C T ADAMTS9 Missense_Mutation p.D1014N 0.61 deleterious(0.05) benign(0.062) TCGA-95-7947-01 3 73433423 73433423 C A PDZRN3 Missense_Mutation p.R765L 0.39 deleterious(0) probably_damaging(0.946) TCGA-95-7947-01 4 141578791 141578791 G A TBC1D9 Silent p.F699F 0.51 TCGA-95-7947-01 4 39077583 39077583 A G KLHL5 Splice_Site p.X174_splice 0.27 TCGA-95-7947-01 4 3949895 3949895 C A FAM86EP RNA 0.33 TCGA-95-7947-01 4 40810350 40810350 G C NSUN7 Silent p.V517V 0.06 TCGA-95-7947-01 4 42122225 42122225 C - BEND4 Frame_Shift_Del p.R412Dfs*47 0.26 TCGA-95-7947-01 4 46067385 46067385 G C GABRG1 Missense_Mutation p.L180V 0.33 tolerated(0.12) benign(0.13) TCGA-95-7947-01 4 47427732 47427732 C A GABRB1 Silent p.I374I 0.33 TCGA-95-7947-01 4 48611798 48611798 G C FRYL Missense_Mutation p.L152V 0.12 tolerated(1) probably_damaging(0.983) TCGA-95-7947-01 4 52860629 52860629 C A LRRC66 Missense_Mutation p.Q853H 0.31 deleterious(0) benign(0.001) TCGA-95-7947-01 4 56448305 56448305 G T PDCL2 Missense_Mutation p.R36S 0.15 tolerated(0.39) possibly_damaging(0.495) TCGA-95-7947-01 4 57314715 57314715 A G PAICS Missense_Mutation p.I182M 0.33 probably_damaging(0.923) TCGA-95-7947-01 4 62679579 62679579 C T LPHN3 Silent p.D416D 0.10 TCGA-95-7947-01 4 62897312 62897312 G - LPHN3 Frame_Shift_Del p.C1124Lfs*72 0.21 TCGA-95-7947-01 4 649750 649750 G T PDE6B Missense_Mutation p.W338C 0.26 deleterious(0.05) probably_damaging(0.969) TCGA-95-7947-01 4 673776 673776 G T MYL5 Missense_Mutation p.M87I 0.32 tolerated(0.1) benign(0.039) TCGA-95-7947-01 4 72215656 72215656 A G SLC4A4 Silent p.E139E 0.34 TCGA-95-7947-01 4 76726444 76726444 G C USO1 Missense_Mutation p.M768I 0.31 tolerated(0.34) benign(0) TCGA-95-7947-01 4 79350311 79350311 C T FRAS1 Nonsense_Mutation p.Q1592* 0.19 TCGA-95-7947-01 4 79436952 79436952 G A FRAS1 Splice_Site p.X3392_splice 0.27 TCGA-95-7947-01 4 82126147 82126147 C A PRKG2 Missense_Mutation p.G19W 0.35 deleterious(0.01) possibly_damaging(0.697) TCGA-95-7947-01 4 85686979 85686979 C A WDFY3 Missense_Mutation p.K1724N 0.22 deleterious(0) benign(0.254) TCGA-95-7947-01 4 85729562 85729562 T A WDFY3 Missense_Mutation p.E785V 0.35 tolerated(0.09) benign(0.184) TCGA-95-7947-01 4 89393557 89393557 C A HERC5 Intron 0.27 TCGA-95-7947-01 4 98762043 98762043 T A STPG2 Missense_Mutation p.Y362F 0.41 tolerated(0.59) benign(0.018) TCGA-95-7947-01 5 135287087 135287087 A T LECT2 Intron 0.36 TCGA-95-7947-01 5 140175601 140175601 C T PCDHA2 Missense_Mutation p.S351L 0.33 tolerated_low_confidence(0.14) benign(0) TCGA-95-7947-01 5 140202977 140202977 G C PCDHA5 Silent p.A539A 0.40 TCGA-95-7947-01 5 140216280 140216280 C T PCDHA7 Missense_Mutation p.A771V 0.28 tolerated_low_confidence(0.14) benign(0.155) TCGA-95-7947-01 5 140222831 140222831 C G PCDHA8 Missense_Mutation p.S642C 0.30 deleterious_low_confidence(0) benign(0.154) TCGA-95-7947-01 5 140389491 140389491 G T PCDHAC1 Missense_Mutation p.G954V 0.23 deleterious(0) probably_damaging(0.989) TCGA-95-7947-01 5 140552615 140552615 G T PCDHB7 Missense_Mutation p.V67F 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.726) TCGA-95-7947-01 5 140559546 140559546 T A PCDHB8 Missense_Mutation p.L644Q 0.48 deleterious_low_confidence(0.02) benign(0.435) TCGA-95-7947-01 5 140725741 140725741 T A PCDHGA3 Missense_Mutation p.L714H 0.25 deleterious_low_confidence(0.02) benign(0.378) TCGA-95-7947-01 5 140741192 140741192 A T PCDHGB2 Missense_Mutation p.K497M 0.46 deleterious(0.04) benign(0.22) TCGA-95-7947-01 5 141236903 141236903 C A PCDH1 Missense_Mutation p.R1078L 0.38 tolerated(0.13) probably_damaging(0.994) TCGA-95-7947-01 5 149758943 149758943 G T TCOF1 Missense_Mutation p.S877I 0.33 tolerated(0.1) probably_damaging(0.916) TCGA-95-7947-01 5 153833008 153833008 G T SAP30L Missense_Mutation p.R124L 0.37 deleterious(0) probably_damaging(0.988) TCGA-95-7947-01 5 154346452 154346452 C G MRPL22 Missense_Mutation p.L206V 0.50 deleterious(0.01) possibly_damaging(0.831) TCGA-95-7947-01 5 154394711 154394711 A T KIF4B Missense_Mutation p.N431I 0.33 tolerated(0.29) benign(0.009) TCGA-95-7947-01 5 156464271 156464271 G A HAVCR1 Silent p.V313V 0.31 TCGA-95-7947-01 5 156920137 156920137 G C ADAM19 Silent p.P584P 0.24 TCGA-95-7947-01 5 158267057 158267057 G A EBF1 Missense_Mutation p.R206C 0.23 deleterious(0) probably_damaging(0.997) TCGA-95-7947-01 5 159686540 159686542 GCA CC CCNJL Frame_Shift_Del p.C221Gfs*17 0.15 TCGA-95-7947-01 5 160047577 160047577 G C ATP10B Silent p.A731A 0.27 TCGA-95-7947-01 5 160047578 160047578 G C ATP10B Missense_Mutation p.A731G 0.27 deleterious(0) probably_damaging(0.971) TCGA-95-7947-01 5 167957247 167957247 C G FBLL1 Missense_Mutation p.F246L 0.26 deleterious(0) possibly_damaging(0.879) TCGA-95-7947-01 5 172745196 172745196 G A STC2 Missense_Mutation p.A188V 0.28 tolerated(0.19) probably_damaging(1) TCGA-95-7947-01 5 26988330 26988330 T A CDH9 Silent p.I37I 0.21 TCGA-95-7947-01 5 26988331 26988331 A T CDH9 Missense_Mutation p.I37K 0.22 tolerated(0.92) benign(0) TCGA-95-7947-01 5 33881259 33881259 C A ADAMTS12 Missense_Mutation p.V152F 0.12 tolerated(0.1) benign(0.155) TCGA-95-7947-01 5 39331837 39331837 C T C9 Missense_Mutation p.D186N 0.18 deleterious(0) probably_damaging(0.998) TCGA-95-7947-01 5 41012727 41012727 C T MROH2B Missense_Mutation p.M1031I 0.20 tolerated(0.78) benign(0.003) TCGA-95-7947-01 5 41510658 41510658 C A PLCXD3 5'UTR 0.10 TCGA-95-7947-01 5 45645327 45645327 C T HCN1 Missense_Mutation p.R270Q 0.24 deleterious(0) probably_damaging(0.994) TCGA-95-7947-01 5 52374604 52374604 C G ITGA2 Missense_Mutation p.S943C 0.46 tolerated(0.08) possibly_damaging(0.774) TCGA-95-7947-01 5 66449351 66449351 C G MAST4 Missense_Mutation p.I1197M 0.20 probably_damaging(0.95) TCGA-95-7947-01 5 68728870 68728870 G C MARVELD2 Missense_Mutation p.E485Q 0.46 tolerated(0.08) probably_damaging(0.913) TCGA-95-7947-01 5 74109750 74109750 C G FAM169A Silent p.G195G 0.04 TCGA-95-7947-01 5 79084793 79084793 G C CMYA5 Splice_Site p.X3852_splice 0.57 TCGA-95-7947-01 6 110056358 110056358 G T FIG4 Missense_Mutation p.S168I 0.24 deleterious(0) possibly_damaging(0.9) TCGA-95-7947-01 6 112476083 112476083 C T LAMA4 Missense_Mutation p.A676T 0.21 deleterious(0.01) possibly_damaging(0.839) TCGA-95-7947-01 6 112476086 112476086 G A LAMA4 Nonsense_Mutation p.Q675* 0.22 TCGA-95-7947-01 6 128134640 128134640 G T THEMIS Silent p.S382S 0.32 TCGA-95-7947-01 6 135263570 135263570 G A ALDH8A1 Missense_Mutation p.T140M 0.29 deleterious(0) probably_damaging(0.995) TCGA-95-7947-01 6 136597195 136597195 C A BCLAF1 Missense_Mutation p.V490L 0.14 tolerated(0.41) benign(0.198) TCGA-95-7947-01 6 139609632 139609632 C A TXLNB Missense_Mutation p.K135N 0.26 deleterious(0.02) probably_damaging(0.982) TCGA-95-7947-01 6 153296105 153296105 C T FBXO5 Missense_Mutation p.R252Q 0.34 tolerated(0.64) benign(0.073) TCGA-95-7947-01 6 155606413 155606413 T C TFB1M Splice_Site p.X183_splice 0.29 TCGA-95-7947-01 6 170846376 170846376 G A PSMB1 Silent p.S162S 0.35 TCGA-95-7947-01 6 25777198 25777198 C G SLC17A4 Intron 0.25 TCGA-95-7947-01 6 26197311 26197311 C T HIST1H3D Silent p.Q56Q 0.19 TCGA-95-7947-01 6 27114968 27114968 C G HIST1H2AH Missense_Mutation p.R21G 0.26 deleterious_low_confidence(0) unknown(0) TCGA-95-7947-01 6 27925535 27925535 G T OR2B6 Missense_Mutation p.V173L 0.36 tolerated(0.2) benign(0.013) TCGA-95-7947-01 6 28540642 28540642 C G SCAND3 Missense_Mutation p.M1008I 0.28 tolerated(0.21) benign(0.016) TCGA-95-7947-01 6 29795569 29795569 G T HLA-G 5'UTR 0.36 TCGA-95-7947-01 6 29910647 29910647 G T HLA-A Missense_Mutation p.D63Y 0.33 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-95-7947-01 6 30639018 30639018 G T DHX16 Silent p.R81R 0.29 TCGA-95-7947-01 6 32036752 32036752 C A TNXB Missense_Mutation p.D1917Y 0.25 probably_damaging(0.999) TCGA-95-7947-01 6 401593 401593 G C IRF4 Missense_Mutation p.E305D 0.38 tolerated(0.07) benign(0.317) TCGA-95-7947-01 6 40400156 40400156 G T LRFN2 Missense_Mutation p.P233T 0.20 tolerated(0.45) benign(0.024) TCGA-95-7947-01 6 42016349 42016349 G C TAF8 5'Flank 0.39 TCGA-95-7947-01 6 42797548 42797548 C T GLTSCR1L Nonsense_Mutation p.Q493* 0.28 TCGA-95-7947-01 6 43111325 43111325 G A PTK7 Missense_Mutation p.E748K 0.33 deleterious(0.03) possibly_damaging(0.588) TCGA-95-7947-01 6 43251427 43251427 C T TTBK1 Silent p.L983L 0.33 TCGA-95-7947-01 6 43488713 43488713 C T POLR1C Silent p.F283F 0.29 TCGA-95-7947-01 6 47846746 47846746 C A PTCHD4 Missense_Mutation p.A612S 0.30 tolerated(0.14) probably_damaging(0.989) TCGA-95-7947-01 6 50683113 50683113 G T TFAP2D Silent p.G108G 0.29 TCGA-95-7947-01 6 56346868 56346868 T C DST Missense_Mutation p.T4548A 0.32 benign(0.004) TCGA-95-7947-01 6 79655973 79655973 C T PHIP Missense_Mutation p.E1459K 0.30 tolerated(0.54) probably_damaging(0.98) TCGA-95-7947-01 6 86346828 86346828 C T SYNCRIP Missense_Mutation p.E175K 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-95-7947-01 6 89388103 89388103 C T RNGTT Missense_Mutation p.G492E 0.32 deleterious(0) probably_damaging(0.996) TCGA-95-7947-01 6 90455280 90455280 C G MDN1 Missense_Mutation p.E1324Q 0.20 benign(0.033) TCGA-95-7947-01 7 100210339 100210339 C T MOSPD3 5'UTR 0.21 TCGA-95-7947-01 7 100485997 100485997 C T SRRT Missense_Mutation p.R850C 0.08 deleterious(0) probably_damaging(0.996) TCGA-95-7947-01 7 102047917 102047917 G A PRKRIP1 Silent p.K143K 0.18 TCGA-95-7947-01 7 103368615 103368615 G A RELN Silent p.G232G 0.43 TCGA-95-7947-01 7 11068308 11068308 G C PHF14 Missense_Mutation p.E440Q 0.65 tolerated(0.14) probably_damaging(0.929) TCGA-95-7947-01 7 111379217 111379217 G A DOCK4 Silent p.I1726I 0.25 TCGA-95-7947-01 7 113518041 113518041 G T PPP1R3A Missense_Mutation p.Q1036K 0.25 tolerated(0.62) benign(0.021) TCGA-95-7947-01 7 121726159 121726159 C G AASS Missense_Mutation p.L697F 0.26 tolerated(0.19) probably_damaging(1) TCGA-95-7947-01 7 124404368 124404368 C G GPR37 Missense_Mutation p.Q221H 0.30 deleterious(0.03) possibly_damaging(0.541) TCGA-95-7947-01 7 127342491 127342491 A G SND1 Missense_Mutation p.I198V 0.25 tolerated(0.94) benign(0.009) TCGA-95-7947-01 7 128497331 128497331 C A FLNC Missense_Mutation p.A2574D 0.39 tolerated(0.1) benign(0.41) TCGA-95-7947-01 7 138579145 138579145 G A KIAA1549 Silent p.R1325R 0.20 TCGA-95-7947-01 7 138579146 138579146 C A KIAA1549 Missense_Mutation p.R1325L 0.21 deleterious(0) probably_damaging(1) TCGA-95-7947-01 7 143632716 143632716 C T OR2F2 Nonsense_Mutation p.R131* 0.25 TCGA-95-7947-01 7 149495214 149495214 G T SSPO Splice_Site 0.42 TCGA-95-7947-01 7 150939586 150939586 T G SMARCD3 Missense_Mutation p.E187A 0.54 deleterious(0.02) probably_damaging(0.999) TCGA-95-7947-01 7 151932917 151932917 A G KMT2C Silent p.A918A 0.13 TCGA-95-7947-01 7 151945009 151945009 G T KMT2C Missense_Mutation p.P837H 0.07 probably_damaging(0.999) TCGA-95-7947-01 7 156799175 156799175 G C MNX1 Missense_Mutation p.Q284E 0.39 deleterious(0) probably_damaging(0.987) TCGA-95-7947-01 7 158829540 158829540 G T VIPR2 Missense_Mutation p.F217L 0.25 deleterious(0) probably_damaging(0.998) TCGA-95-7947-01 7 1976459 1976459 C A MAD1L1 Silent p.L557L 0.13 TCGA-95-7947-01 7 21469387 21469387 G A SP4 Missense_Mutation p.G202S 0.16 deleterious(0.05) probably_damaging(0.986) TCGA-95-7947-01 7 24690293 24690293 A T MPP6 Missense_Mutation p.I205F 0.44 deleterious(0) probably_damaging(0.958) TCGA-95-7947-01 7 26224622 26224622 C G NFE2L3 Missense_Mutation p.S435C 0.13 tolerated(0.07) benign(0.02) TCGA-95-7947-01 7 27149900 27149900 C A HOXA3 Silent p.P120P 0.20 TCGA-95-7947-01 7 2954905 2954905 C G CARD11 Silent p.L935L 0.61 TCGA-95-7947-01 7 32110073 32110073 G A PDE1C Intron 0.16 TCGA-95-7947-01 7 34994315 34994315 C A DPY19L1 Missense_Mutation p.D366Y 0.33 deleterious(0) probably_damaging(0.995) TCGA-95-7947-01 7 39125535 39125535 G A POU6F2 Missense_Mutation p.E32K 0.25 deleterious_low_confidence(0.01) probably_damaging(0.952) TCGA-95-7947-01 7 50671734 50671734 T A GRB10 Missense_Mutation p.E502V 0.24 deleterious(0.01) possibly_damaging(0.647) TCGA-95-7947-01 7 50671735 50671735 C T GRB10 Missense_Mutation p.E502K 0.24 deleterious(0.01) possibly_damaging(0.6) TCGA-95-7947-01 7 55211028 55211028 A G EGFR Missense_Mutation p.I91V 0.27 tolerated(0.57) benign(0.03) TCGA-95-7947-01 7 55269468 55269468 G T EGFR Missense_Mutation p.R1052I 0.23 tolerated(0.12) benign(0.081) TCGA-95-7947-01 7 73470702 73470702 G T ELN Missense_Mutation p.A418S 0.26 unknown(0) TCGA-95-7947-01 7 8095167 8095167 C G GLCCI1 Missense_Mutation p.I267M 0.65 tolerated(0.07) possibly_damaging(0.562) TCGA-95-7947-01 7 87471013 87471013 G C SLC25A40 Missense_Mutation p.T253S 0.19 deleterious(0) probably_damaging(0.999) TCGA-95-7947-01 7 87479232 87479232 C A SLC25A40 Missense_Mutation p.G99V 0.11 deleterious(0) probably_damaging(1) TCGA-95-7947-01 7 93067425 93067425 C G CALCR Missense_Mutation p.V327L 0.20 tolerated(0.19) benign(0.056) TCGA-95-7947-01 7 97822874 97822874 G A LMTK2 Missense_Mutation p.E1033K 0.23 deleterious(0) probably_damaging(0.999) TCGA-95-7947-01 7 99674999 99674999 C T ZNF3 5'UTR 0.27 TCGA-95-7947-01 8 109001460 109001460 G A RSPO2 Missense_Mutation p.S36L 0.26 deleterious(0.03) benign(0.049) TCGA-95-7947-01 8 110397764 110397764 A T PKHD1L1 Splice_Site p.X159_splice 0.19 TCGA-95-7947-01 8 131073214 131073214 G C ASAP1 Missense_Mutation p.P935A 0.28 tolerated(0.13) benign(0.101) TCGA-95-7947-01 8 133053885 133053885 G A OC90 Silent p.I77I 0.26 TCGA-95-7947-01 8 139736904 139736904 G T COL22A1 Missense_Mutation p.P734H 0.40 unknown(0) TCGA-95-7947-01 8 139839014 139839014 G A COL22A1 Missense_Mutation p.P286S 0.24 unknown(0) TCGA-95-7947-01 8 140630669 140630669 G A KCNK9 Silent p.S319S 0.32 TCGA-95-7947-01 8 142178212 142178212 G A DENND3 Silent p.L541L 0.28 TCGA-95-7947-01 8 17796323 17796323 G A PCM1 Silent p.K139K 0.37 TCGA-95-7947-01 8 35606111 35606111 C G UNC5D Missense_Mutation p.I611M 0.44 tolerated(0.09) benign(0.254) TCGA-95-7947-01 8 36793497 36793497 G T KCNU1 3'UTR 0.25 TCGA-95-7947-01 8 37688280 37688280 G A GPR124 Silent p.V257V 0.24 TCGA-95-7947-01 8 37691560 37691560 G A GPR124 Missense_Mutation p.E508K 0.31 deleterious(0) probably_damaging(0.917) TCGA-95-7947-01 8 42166509 42166509 C T IKBKB Missense_Mutation p.R220W 0.28 deleterious(0) probably_damaging(0.961) TCGA-95-7947-01 8 61734601 61734601 G A CHD7 Missense_Mutation p.D952N 0.22 possibly_damaging(0.551) TCGA-95-7947-01 8 65509386 65509386 C T CYP7B1 Missense_Mutation p.G445E 0.29 deleterious(0) probably_damaging(1) TCGA-95-7947-01 8 72936057 72936057 C T TRPA1 Silent p.Q1047Q 0.33 TCGA-95-7947-01 8 7752238 7752238 A G DEFB4A Missense_Mutation p.R2G 0.06 deleterious(0.01) unknown(0) TCGA-95-7947-01 8 77617343 77617343 A C ZFHX4 Missense_Mutation p.K340N 0.26 possibly_damaging(0.607) TCGA-95-7947-01 8 86039068 86039068 G A LRRCC1 Missense_Mutation p.D473N 0.30 deleterious(0.03) probably_damaging(0.971) TCGA-95-7947-01 8 88885347 88885347 G - DCAF4L2 Frame_Shift_Del p.L285Wfs*6 0.25 TCGA-95-7947-01 8 95541319 95541319 C T KIAA1429 Missense_Mutation p.E287K 0.23 tolerated(0.1) benign(0.047) TCGA-95-7947-01 8 95884155 95884155 G C INTS8 Missense_Mutation p.E820Q 0.33 tolerated(0.3) probably_damaging(0.998) TCGA-95-7947-01 9 101304157 101304157 C T GABBR2 Missense_Mutation p.E210K 0.26 tolerated(0.27) probably_damaging(0.963) TCGA-95-7947-01 9 117267091 117267091 G A DFNB31 5'UTR 0.90 TCGA-95-7947-01 9 117848184 117848184 C T TNC Missense_Mutation p.C609Y 0.78 deleterious(0) probably_damaging(1) TCGA-95-7947-01 9 136330483 136330483 C T CACFD1 Silent p.F78F 0.80 TCGA-95-7947-01 9 138011958 138011958 G A OLFM1 Nonsense_Mutation p.W446* 0.17 TCGA-95-7947-01 9 138588565 138588565 G C SOHLH1 Missense_Mutation p.A185G 0.78 tolerated(0.12) benign(0.033) TCGA-95-7947-01 9 23731084 23731084 G T ELAVL2 Missense_Mutation p.P90H 0.18 deleterious(0.04) benign(0.399) TCGA-95-7947-01 9 34241369 34241369 C G UBAP1 Missense_Mutation p.P180A 0.26 tolerated(0.5) benign(0.332) TCGA-95-7947-01 9 34242063 34242063 C G UBAP1 Missense_Mutation p.S411C 0.24 deleterious(0.05) probably_damaging(0.946) TCGA-95-7947-01 9 40784563 40784563 C A ZNF658 Missense_Mutation p.R19L 0.42 deleterious(0.05) benign(0.02) TCGA-95-7947-01 9 43737405 43737405 C G CNTNAP3B Missense_Mutation p.T92S 0.17 tolerated(0.12) possibly_damaging(0.491) TCGA-95-7947-01 9 4833225 4833225 G A RCL1 Silent p.L152L 0.17 TCGA-95-7947-01 9 6012838 6012838 C G RANBP6 Missense_Mutation p.D924H 0.22 tolerated(0.13) possibly_damaging(0.872) TCGA-95-7947-01 9 73477941 73477941 G T TRPM3 Silent p.L115L 0.28 TCGA-95-7947-01 9 74477467 74477467 C A ABHD17B 3'UTR 0.20 TCGA-95-7947-01 9 74477498 74477498 C A ABHD17B Nonstop_Mutation p.*294Lext*23 0.23 TCGA-95-7947-01 9 79117682 79117682 G T GCNT1 Missense_Mutation p.V129F 0.45 deleterious(0) probably_damaging(0.969) TCGA-95-7947-01 9 80336181 80336181 C T GNAQ 3'UTR 0.28 TCGA-95-7947-01 9 84534351 84534351 C A SPATA31D5P RNA 0.54 TCGA-95-7947-01 9 84534483 84534483 A T SPATA31D5P RNA 0.09 TCGA-95-7947-01 9 86368180 86368180 T G GKAP1 Missense_Mutation p.Q278P 0.19 deleterious(0.01) possibly_damaging(0.642) TCGA-95-7947-01 9 89771716 89771716 C A C9orf170 3'UTR 0.18 TCGA-95-7947-01 9 94874764 94874764 T G SPTLC1 Missense_Mutation p.L46F 0.16 tolerated(0.38) possibly_damaging(0.653) TCGA-95-7947-01 9 95258649 95258649 G A ECM2 Missense_Mutation p.S683L 0.03 deleterious(0.02) probably_damaging(0.926) TCGA-95-7947-01 9 977286 977286 A G DMRT3 Silent p.P95P 0.23 TCGA-95-7947-01 X 115304135 115304135 C T AGTR2 Missense_Mutation p.P201L 0.56 tolerated(0.85) benign(0.009) TCGA-95-7947-01 X 1467367 1467376 GTGAAGTGAC - IL3RA Frame_Shift_Del p.C76Sfs*32 0.15 TCGA-95-7947-01 X 17820121 17820121 G C RAI2 Missense_Mutation p.L4V 0.69 deleterious_low_confidence(0.04) probably_damaging(0.969) TCGA-95-7947-01 X 20153879 20153879 T G EIF1AX Missense_Mutation p.I61L 0.62 tolerated(0.06) possibly_damaging(0.727) TCGA-95-7947-01 X 21627461 21627461 G T CNKSR2 Silent p.R806R 0.67 TCGA-95-7947-01 X 24766437 24766437 C G POLA1 Missense_Mutation p.Q895E 0.72 tolerated(0.95) benign(0.001) TCGA-95-7947-01 X 2712605 2712605 G A XG Missense_Mutation p.G95R 0.44 deleterious(0.03) probably_damaging(0.991) TCGA-95-7947-01 X 47086599 47086599 G A CDK16 Missense_Mutation p.D495N 0.55 tolerated(0.14) benign(0.007) TCGA-95-7947-01 X 47271817 47271817 C G ZNF157 Silent p.L115L 0.61 TCGA-95-7947-01 X 52896082 52896082 A T XAGE3 Splice_Site p.X27_splice 0.62 TCGA-95-7947-01 X 64709193 64709193 G A ZC3H12B Missense_Mutation p.R171K 0.80 tolerated(0.98) benign(0) TCGA-95-7947-01 X 69282948 69282948 C A OTUD6A Missense_Mutation p.P192T 0.69 tolerated(0.07) benign(0.314) TCGA-95-7947-01 X 70339996 70339997 - AG MED12 Frame_Shift_Ins p.H179Dfs*42 0.47 TCGA-95-7947-01 X 72667226 72667226 C A CDX4 Missense_Mutation p.A46E 0.67 deleterious(0.01) possibly_damaging(0.491) TCGA-95-7947-01 X 75396725 75396725 C G PBDC1 Missense_Mutation p.P103A 0.76 tolerated(0.1) possibly_damaging(0.771) TCGA-95-7947-01 X 76972666 76972666 T A ATRX Silent p.S25S 0.67 TCGA-95-7947-01 X 84526329 84526329 A G ZNF711 Missense_Mutation p.H594R 0.75 tolerated(0.07) possibly_damaging(0.906) TCGA-95-7947-01 X 86773043 86773043 G T KLHL4 Missense_Mutation p.Q49H 0.53 deleterious_low_confidence(0.02) benign(0.023) TCGA-95-7947-01 Y 6736332 6736332 G A AMELY Nonsense_Mutation p.Q107* 0.75 TCGA-95-7948-01 10 102304755 102304755 C G HIF1AN Missense_Mutation p.Q209E 0.20 deleterious(0.03) probably_damaging(0.978) TCGA-95-7948-01 10 105145201 105145201 C G TAF5 Missense_Mutation p.P595A 0.19 deleterious(0) probably_damaging(0.992) TCGA-95-7948-01 10 115536935 115536935 G C PLEKHS1 Missense_Mutation p.D362H 0.14 deleterious(0) probably_damaging(1) TCGA-95-7948-01 10 131676071 131676071 C A EBF3 Missense_Mutation p.L199F 0.29 deleterious(0) possibly_damaging(0.513) TCGA-95-7948-01 10 134017270 134017270 C T DPYSL4 Missense_Mutation p.A489V 0.45 tolerated(0.14) benign(0.002) TCGA-95-7948-01 10 27328913 27328913 G A ANKRD26 Nonsense_Mutation p.R786* 0.06 TCGA-95-7948-01 10 27448608 27448608 G A MASTL Missense_Mutation p.D129N 0.24 deleterious(0) probably_damaging(1) TCGA-95-7948-01 10 34663884 34663884 G A PARD3 Missense_Mutation p.S529L 0.34 deleterious(0) benign(0.118) TCGA-95-7948-01 10 69832647 69832647 C G HERC4 Missense_Mutation p.K73N 0.04 tolerated(0.23) benign(0.035) TCGA-95-7948-01 10 71158502 71158502 G C HK1 Missense_Mutation p.D847H 0.06 deleterious(0.01) benign(0.169) TCGA-95-7948-01 10 71158543 71158543 G T HK1 Silent p.V860V 0.07 TCGA-95-7948-01 10 71683573 71683573 G A COL13A1 Missense_Mutation p.D405N 0.28 tolerated(0.45) benign(0.021) TCGA-95-7948-01 10 88446862 88446862 G A LDB3 Silent p.L242L 0.28 TCGA-95-7948-01 11 104897032 104897032 C T CASP1 Missense_Mutation p.E390K 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-95-7948-01 11 1216383 1216383 C T MUC5AC RNA 0.29 TCGA-95-7948-01 11 129999975 129999975 G C APLP2 Missense_Mutation p.E500Q 0.12 deleterious(0) probably_damaging(0.998) TCGA-95-7948-01 11 1718870 1718870 C G KRTAP5-6 3'UTR 0.17 TCGA-95-7948-01 11 2323358 2323358 A G TSPAN32 5'UTR 0.14 TCGA-95-7948-01 11 2950336 2950336 C T PHLDA2 Missense_Mutation p.E87K 0.26 deleterious(0.02) benign(0.041) TCGA-95-7948-01 11 49168488 49168488 G C FOLH1 Missense_Mutation p.I691M 0.19 deleterious(0) probably_damaging(0.989) TCGA-95-7948-01 11 5020308 5020308 C G OR51L1 Silent p.L32L 0.05 TCGA-95-7948-01 11 55890191 55890191 C G OR8H3 Missense_Mutation p.L115V 0.16 deleterious(0) probably_damaging(0.977) TCGA-95-7948-01 11 56510847 56510847 A G OR9G4 Silent p.Y147Y 0.04 TCGA-95-7948-01 11 64521147 64521147 G A PYGM Missense_Mutation p.A416V 0.26 tolerated(0.18) benign(0.045) TCGA-95-7948-01 11 64974124 64974124 C T CAPN1 Missense_Mutation p.S515L 0.15 deleterious(0.01) probably_damaging(0.987) TCGA-95-7948-01 11 65273045 65273045 C G MALAT1 RNA 0.17 TCGA-95-7948-01 11 65829154 65829154 C T SF3B2 Intron 0.11 TCGA-95-7948-01 11 66360198 66360198 C T CCDC87 Missense_Mutation p.E97K 0.11 deleterious(0.01) possibly_damaging(0.537) TCGA-95-7948-01 11 68181430 68181430 G A LRP5 Missense_Mutation p.C926Y 0.19 deleterious(0) probably_damaging(1) TCGA-95-7948-01 11 73803494 73803494 C T C2CD3 Missense_Mutation p.E1162K 0.25 deleterious(0.02) benign(0.133) TCGA-95-7948-01 11 77823813 77823813 G A ALG8 Nonsense_Mutation p.Q261* 0.15 TCGA-95-7948-01 12 10750794 10750794 G A KLRAP1 RNA 0.36 TCGA-95-7948-01 12 130827556 130827556 C T PIWIL1 Nonsense_Mutation p.Q34* 0.29 TCGA-95-7948-01 12 31944812 31944812 C T H3F3C Missense_Mutation p.E97K 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.666) TCGA-95-7948-01 12 56188646 56188646 C T SARNP Missense_Mutation p.E108K 0.29 tolerated(0.3) benign(0.358) TCGA-95-7948-01 12 56346586 56346586 C A DGKA Missense_Mutation p.S604R 0.54 deleterious(0) probably_damaging(0.995) TCGA-95-7948-01 12 72017964 72017964 G A ZFC3H1 Nonsense_Mutation p.Q1476* 0.08 TCGA-95-7948-01 13 41704613 41704613 C G KBTBD6 3'UTR 0.31 TCGA-95-7948-01 13 41704658 41704658 C G KBTBD6 Missense_Mutation p.D664H 0.37 deleterious_low_confidence(0.01) probably_damaging(0.928) TCGA-95-7948-01 14 21269841 21269841 C T RNASE1 Silent p.P129P 0.30 TCGA-95-7948-01 14 45431675 45431675 C T FAM179B Silent p.L17L 0.28 TCGA-95-7948-01 14 74753327 74753327 G C ABCD4 Intron 0.42 TCGA-95-7948-01 14 96178093 96178093 C T TCL1A Silent p.%3D 0.38 TCGA-95-7948-01 15 100331181 100331181 C G AC090825.1 5'Flank 0.46 TCGA-95-7948-01 15 42510006 42510006 C T TMEM87A Missense_Mutation p.D541N 0.39 deleterious(0) probably_damaging(0.987) TCGA-95-7948-01 15 43328728 43328728 G A UBR1 Nonsense_Mutation p.Q696* 0.31 TCGA-95-7948-01 15 52433340 52433340 C T GNB5 Missense_Mutation p.M208I 0.20 tolerated(0.51) benign(0.214) TCGA-95-7948-01 15 64026970 64026970 G C HERC1 Missense_Mutation p.L867V 0.40 probably_damaging(0.979) TCGA-95-7948-01 15 64506298 64506298 G A CSNK1G1 Missense_Mutation p.S157L 0.21 deleterious(0.04) possibly_damaging(0.731) TCGA-95-7948-01 15 75115958 75115958 G A LMAN1L Missense_Mutation p.E420K 0.21 tolerated(1) benign(0.004) TCGA-95-7948-01 15 78777160 78777160 C T IREB2 Missense_Mutation p.H491Y 0.06 tolerated(0.07) benign(0.121) TCGA-95-7948-01 15 83455853 83455853 C T FSD2 Missense_Mutation p.R97K 0.20 tolerated(0.16) benign(0.005) TCGA-95-7948-01 15 90173628 90173628 G A KIF7 Missense_Mutation p.L1070F 0.08 deleterious(0) probably_damaging(0.999) TCGA-95-7948-01 16 21611078 21611078 G A METTL9 Silent p.L8L 0.20 TCGA-95-7948-01 16 2161870 2161870 C T PKD1 Missense_Mutation p.E1100K 0.19 possibly_damaging(0.811) TCGA-95-7948-01 16 31309257 31309257 C G ITGAM Missense_Mutation p.I564M 0.20 deleterious(0.02) probably_damaging(0.93) TCGA-95-7948-01 16 69833132 69833132 A - WWP2 Frame_Shift_Del p.R92Efs*5 0.24 TCGA-95-7948-01 16 71674454 71674454 C T MARVELD3 Missense_Mutation p.R253W 0.20 deleterious(0) probably_damaging(0.999) TCGA-95-7948-01 16 89964965 89964965 G C TCF25 Missense_Mutation p.R341S 0.25 deleterious(0) probably_damaging(0.994) TCGA-95-7948-01 17 18565946 18565946 C G ZNF286B Missense_Mutation p.Q291H 0.14 tolerated(0.09) possibly_damaging(0.721) TCGA-95-7948-01 17 2224685 2224685 G C SRR Missense_Mutation p.G162A 0.24 deleterious(0) probably_damaging(1) TCGA-95-7948-01 17 25621405 25621405 C T WSB1 5'UTR 0.20 TCGA-95-7948-01 17 39579083 39579083 G A KRT37 Nonsense_Mutation p.Q227* 0.25 TCGA-95-7948-01 17 40957871 40957871 G C CNTD1 Silent p.L183L 0.23 TCGA-95-7948-01 17 40957872 40957872 G T CNTD1 Missense_Mutation p.A184S 0.23 tolerated(0.15) benign(0.03) TCGA-95-7948-01 17 48217463 48217463 C T PPP1R9B Missense_Mutation p.E619K 0.25 deleterious(0.01) possibly_damaging(0.484) TCGA-95-7948-01 17 49072576 49072576 C A SPAG9 Missense_Mutation p.A690S 0.07 deleterious(0.01) probably_damaging(0.994) TCGA-95-7948-01 17 51902371 51902371 G C KIF2B Silent p.L659L 0.19 TCGA-95-7948-01 17 65850861 65850861 G A BPTF Silent p.L473L 0.13 TCGA-95-7948-01 17 73490824 73490824 G T KIAA0195 Missense_Mutation p.D842Y 0.12 deleterious(0) probably_damaging(0.928) TCGA-95-7948-01 17 73754172 73754172 G C GALK1 Missense_Mutation p.Q382E 0.25 tolerated(0.59) benign(0.001) TCGA-95-7948-01 17 7950584 7950584 C G ALOX15B Missense_Mutation p.S489C 0.50 deleterious(0) probably_damaging(0.992) TCGA-95-7948-01 18 29041325 29041325 G A DSG3 Missense_Mutation p.E317K 0.23 deleterious(0.05) possibly_damaging(0.765) TCGA-95-7948-01 18 33243677 33243677 G A GALNT1 Missense_Mutation p.M75I 0.31 tolerated(0.2) benign(0.01) TCGA-95-7948-01 18 44683867 44683867 C A IER3IP1 Nonsense_Mutation p.E45* 0.24 TCGA-95-7948-01 18 56205245 56205245 C G ALPK2 Missense_Mutation p.R725T 0.19 deleterious(0.01) possibly_damaging(0.698) TCGA-95-7948-01 18 59483731 59483731 G A RNF152 5'UTR 0.06 TCGA-95-7948-01 18 72167216 72167221 CCCTCA - CNDP2 In_Frame_Del p.L4_T5del 0.18 TCGA-95-7948-01 19 10087239 10087239 G A COL5A3 Missense_Mutation p.P1113S 0.21 possibly_damaging(0.518) TCGA-95-7948-01 19 10127876 10127876 G C RDH8 Missense_Mutation p.E103Q 0.34 tolerated(0.19) benign(0.008) TCGA-95-7948-01 19 12786738 12786738 C T DHPS Missense_Mutation p.D342N 0.18 deleterious(0) possibly_damaging(0.453) TCGA-95-7948-01 19 13395961 13395961 C T CACNA1A Missense_Mutation p.E1205K 0.21 benign(0.077) TCGA-95-7948-01 19 19371821 19371821 G T HAPLN4 Missense_Mutation p.F95L 0.20 tolerated(0.66) probably_damaging(0.996) TCGA-95-7948-01 19 2214609 2214609 G A DOT1L Intron 0.15 TCGA-95-7948-01 19 38198843 38198843 C T ZNF607 Silent p.V69V 0.20 TCGA-95-7948-01 19 40730538 40730538 G C CNTD2 Missense_Mutation p.L124V 0.26 deleterious(0) probably_damaging(0.999) TCGA-95-7948-01 19 44051123 44051123 G C XRCC1 Silent p.L402L 0.26 TCGA-95-7948-01 19 45998252 45998252 C T RTN2 Missense_Mutation p.D31N 0.23 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-95-7948-01 19 47230793 47230793 G A STRN4 Silent p.I395I 0.34 TCGA-95-7948-01 19 49618206 49618206 C G LIN7B Missense_Mutation p.F46L 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-95-7948-01 19 54664081 54664081 G A TMC4 Missense_Mutation p.R701C 0.23 deleterious(0) probably_damaging(0.988) TCGA-95-7948-01 19 56935705 56935705 C T ZNF583 Nonsense_Mutation p.Q560* 0.37 TCGA-95-7948-01 19 58773458 58773458 C T ZNF544 Nonsense_Mutation p.Q496* 0.32 TCGA-95-7948-01 19 6183092 6183092 C G ACSBG2 Silent p.L377L 0.21 TCGA-95-7948-01 19 8201290 8201290 C T FBN3 Missense_Mutation p.V443M 0.05 tolerated(0.12) benign(0.21) TCGA-95-7948-01 19 9721178 9721178 G A ZNF561 Missense_Mutation p.H387Y 0.15 deleterious(0) possibly_damaging(0.902) TCGA-95-7948-01 1 150131230 150131230 G C PLEKHO1 Missense_Mutation p.D248H 0.49 deleterious(0.05) benign(0.399) TCGA-95-7948-01 1 152282561 152282561 C G FLG Missense_Mutation p.E1601Q 0.22 possibly_damaging(0.728) TCGA-95-7948-01 1 155385641 155385641 A C ASH1L Missense_Mutation p.L1968V 0.17 tolerated_low_confidence(0.27) benign(0.167) TCGA-95-7948-01 1 1721961 1721961 G C GNB1 Missense_Mutation p.S191C 0.10 deleterious(0) probably_damaging(0.955) TCGA-95-7948-01 1 202544281 202544281 C T PPP1R12B Intron 0.12 TCGA-95-7948-01 1 212118198 212118198 G C INTS7 Silent p.L843L 0.04 TCGA-95-7948-01 1 24449853 24449853 G T IL22RA1 Missense_Mutation p.A244E 0.53 deleterious(0) possibly_damaging(0.793) TCGA-95-7948-01 1 41483474 41483474 C T SLFNL1 Missense_Mutation p.D264N 0.17 deleterious(0.02) possibly_damaging(0.651) TCGA-95-7948-01 1 41483477 41483477 C A SLFNL1 Nonsense_Mutation p.E263* 0.17 TCGA-95-7948-01 1 41486212 41486212 C G SLFNL1 Missense_Mutation p.E41Q 0.12 tolerated_low_confidence(0.39) benign(0.033) TCGA-95-7948-01 1 41486281 41486281 C T SLFNL1 Missense_Mutation p.E18K 0.13 deleterious_low_confidence(0.03) benign(0.017) TCGA-95-7948-01 1 89448792 89448792 C T RBMXL1 Missense_Mutation p.D240N 0.49 tolerated(0.07) possibly_damaging(0.694) TCGA-95-7948-01 20 16348428 16348428 G A KIF16B Missense_Mutation p.A1181V 0.14 tolerated_low_confidence(0.28) benign(0.001) TCGA-95-7948-01 20 30065669 30065669 G C REM1 Missense_Mutation p.D127H 0.25 deleterious(0.02) probably_damaging(0.961) TCGA-95-7948-01 20 3102754 3102754 G T UBOX5 Silent p.I177I 0.22 TCGA-95-7948-01 20 8721083 8721083 G C PLCB1 Missense_Mutation p.D801H 0.19 deleterious(0) possibly_damaging(0.694) TCGA-95-7948-01 21 41142889 41142889 G C IGSF5 Missense_Mutation p.E155D 0.17 deleterious(0.01) probably_damaging(0.91) TCGA-95-7948-01 21 44323733 44323733 C T NDUFV3 Missense_Mutation p.S204L 0.16 tolerated(0.17) possibly_damaging(0.591) TCGA-95-7948-01 21 45540973 45540973 G A PWP2 Silent p.L542L 0.29 TCGA-95-7948-01 22 19222139 19222139 G A CLTCL1 Missense_Mutation p.R354C 0.07 deleterious(0.01) benign(0.151) TCGA-95-7948-01 22 38690475 38690475 C T CSNK1E Missense_Mutation p.M317I 0.13 tolerated_low_confidence(0.45) benign(0) TCGA-95-7948-01 22 47290698 47290698 C T TBC1D22A Missense_Mutation p.R286C 0.24 deleterious(0) probably_damaging(0.962) TCGA-95-7948-01 2 110905540 110905540 G C NPHP1 Missense_Mutation p.P464A 0.19 deleterious(0.04) probably_damaging(0.973) TCGA-95-7948-01 2 11367475 11367475 G A ROCK2 Missense_Mutation p.S258L 0.15 deleterious(0) probably_damaging(1) TCGA-95-7948-01 2 153530178 153530178 C G PRPF40A Missense_Mutation p.K358N 0.09 tolerated(0.06) benign(0.403) TCGA-95-7948-01 2 166767949 166767949 C T TTC21B Silent p.L783L 0.22 TCGA-95-7948-01 2 185802465 185802465 C T ZNF804A Missense_Mutation p.S781L 0.25 deleterious(0) probably_damaging(0.95) TCGA-95-7948-01 2 20508167 20508167 C G PUM2 Missense_Mutation p.E233Q 0.19 tolerated_low_confidence(0.06) benign(0.379) TCGA-95-7948-01 2 215880343 215880343 G A ABCA12 Silent p.I609I 0.42 TCGA-95-7948-01 2 26178520 26178520 G A KIF3C Missense_Mutation p.R554W 0.49 possibly_damaging(0.877) TCGA-95-7948-01 2 39224544 39224544 C G SOS1 Missense_Mutation p.L938F 0.23 tolerated(0.07) probably_damaging(0.959) TCGA-95-7948-01 2 50724737 50724737 G T NRXN1 Missense_Mutation p.S911R 0.14 deleterious(0.03) benign(0.218) TCGA-95-7948-01 2 71650506 71650506 C G ZNF638 Missense_Mutation p.P1288A 0.11 tolerated(0.27) benign(0) TCGA-95-7948-01 3 110837719 110837719 G C PVRL3 Missense_Mutation p.R240T 0.50 deleterious(0.01) probably_damaging(0.966) TCGA-95-7948-01 3 159976291 159976296 TTCTTA - IFT80 3'UTR 0.64 TCGA-95-7948-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.43 deleterious(0.02) probably_damaging(0.959) TCGA-95-7948-01 3 40251560 40251560 G C MYRIP Missense_Mutation p.Q627H 0.53 tolerated(0.08) benign(0.038) TCGA-95-7948-01 3 49163465 49163465 G A LAMB2 Missense_Mutation p.S760F 0.64 deleterious(0) benign(0.025) TCGA-95-7948-01 3 50386409 50386409 C G NPRL2 Missense_Mutation p.E161Q 0.43 tolerated(0.52) benign(0.007) TCGA-95-7948-01 3 52437500 52437500 C - BAP1 Frame_Shift_Del p.G554Vfs*17 0.44 TCGA-95-7948-01 4 123192815 123192815 C G KIAA1109 Missense_Mutation p.F2712L 0.10 probably_damaging(0.977) TCGA-95-7948-01 4 125590140 125590140 T - ANKRD50 Intron 0.27 TCGA-95-7948-01 4 126238505 126238505 C G FAT4 Missense_Mutation p.F313L 0.17 benign(0.314) TCGA-95-7948-01 4 134073363 134073363 G A PCDH10 Missense_Mutation p.G690R 0.40 tolerated(0.59) probably_damaging(0.991) TCGA-95-7948-01 4 154625613 154625613 A G TLR2 Silent p.Q518Q 0.53 TCGA-95-7948-01 4 40121580 40121580 G C N4BP2 Missense_Mutation p.E617Q 0.11 tolerated(0.25) possibly_damaging(0.649) TCGA-95-7948-01 4 40122548 40122548 G C N4BP2 Missense_Mutation p.K939N 0.20 tolerated(0.07) possibly_damaging(0.701) TCGA-95-7948-01 4 79808376 79808376 C G BMP2K Missense_Mutation p.S667C 0.11 deleterious_low_confidence(0) unknown(0) TCGA-95-7948-01 5 134147433 134147433 C T DDX46 Silent p.F778F 0.20 TCGA-95-7948-01 5 140228529 140228529 C G PCDHA9 Missense_Mutation p.S150C 0.11 deleterious_low_confidence(0.01) probably_damaging(0.971) TCGA-95-7948-01 5 146777387 146777387 C T DPYSL3 Missense_Mutation p.E549K 0.24 deleterious(0.02) probably_damaging(0.976) TCGA-95-7948-01 5 153144112 153144112 G C GRIA1 Missense_Mutation p.E658Q 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-95-7948-01 5 176002508 176002508 G A CDHR2 Missense_Mutation p.G257E 0.04 deleterious(0) probably_damaging(0.982) TCGA-95-7948-01 5 36049273 36049273 G A UGT3A2 Silent p.F187F 0.23 TCGA-95-7948-01 5 79454754 79454754 G C SERINC5 Missense_Mutation p.I297M 0.05 tolerated(0.08) possibly_damaging(0.883) TCGA-95-7948-01 6 110113848 110113848 G A FIG4 Missense_Mutation p.D814N 0.37 deleterious(0.04) possibly_damaging(0.562) TCGA-95-7948-01 6 155596801 155596801 C A CLDN20 5'UTR 0.10 TCGA-95-7948-01 6 26032138 26032138 C G HIST1H3B Missense_Mutation p.E51Q 0.13 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-95-7948-01 6 26124097 26124097 C T HIST1H2BC Silent p.K12K 0.16 TCGA-95-7948-01 6 27776021 27776021 C T HIST1H2AI Missense_Mutation p.R12C 0.05 deleterious_low_confidence(0.03) unknown(0) TCGA-95-7948-01 6 27782485 27782485 G A HIST1H2AJ Missense_Mutation p.R12C 0.09 deleterious_low_confidence(0.03) unknown(0) TCGA-95-7948-01 6 28251760 28251760 G A PGBD1 Missense_Mutation p.G57E 0.27 tolerated_low_confidence(0.06) benign(0.125) TCGA-95-7948-01 6 31084746 31084746 G A CDSN Missense_Mutation p.R216C 0.17 deleterious_low_confidence(0) unknown(0) TCGA-95-7948-01 6 32023733 32023733 C T TNXB Missense_Mutation p.E2788K 0.23 benign(0.009) TCGA-95-7948-01 6 35210967 35210967 G A SCUBE3 Silent p.P621P 0.21 TCGA-95-7948-01 6 35444128 35444128 C T TEAD3 Missense_Mutation p.R226Q 0.25 tolerated(0.16) benign(0.088) TCGA-95-7948-01 6 39082745 39082745 G C SAYSD1 Missense_Mutation p.L41V 0.19 tolerated(0.45) benign(0.038) TCGA-95-7948-01 6 49421348 49421348 G C MUT Missense_Mutation p.L345V 0.05 deleterious_low_confidence(0.02) benign(0.206) TCGA-95-7948-01 7 113518581 113518581 G A PPP1R3A Nonsense_Mutation p.Q856* 0.18 TCGA-95-7948-01 7 131817925 131817925 G A PLXNA4 Silent p.I1824I 0.20 TCGA-95-7948-01 7 138982636 138982636 G A UBN2 3'UTR 0.36 TCGA-95-7948-01 7 2409156 2409156 G A EIF3B Missense_Mutation p.E485K 0.17 deleterious(0) benign(0.326) TCGA-95-7948-01 7 30831131 30831131 G C FAM188B Missense_Mutation p.M338I 0.25 tolerated(0.1) benign(0.011) TCGA-95-7948-01 7 8110737 8110737 G A GLCCI1 Missense_Mutation p.D385N 0.18 deleterious(0) probably_damaging(0.991) TCGA-95-7948-01 8 105261043 105261043 T A RIMS2 Splice_Site p.X1197_splice 0.04 TCGA-95-7948-01 8 105511743 105511743 G A LRP12 Nonsense_Mutation p.Q93* 0.09 TCGA-95-7948-01 8 142178249 142178249 C G DENND3 Missense_Mutation p.L554V 0.35 tolerated(0.46) benign(0.002) TCGA-95-7948-01 8 143957662 143957662 C G CYP11B1 Missense_Mutation p.D317H 0.26 deleterious(0) probably_damaging(0.997) TCGA-95-7948-01 8 48719862 48719862 C T PRKDC Missense_Mutation p.E3194K 0.33 benign(0.118) TCGA-95-7948-01 8 99102182 99102182 C T C8orf47 Nonsense_Mutation p.R313* 0.17 TCGA-95-7948-01 9 137004995 137004995 G A WDR5 5'UTR 0.29 TCGA-95-7948-01 9 98244475 98244475 A G PTCH1 Silent p.L199L 0.33 TCGA-95-7948-01 X 100533109 100533109 A T TAF7L Missense_Mutation p.Y255N 0.06 tolerated(0.06) benign(0.089) TCGA-95-7948-01 X 12906731 12906731 C G TLR7 Missense_Mutation p.T1035R 0.08 deleterious(0) benign(0.254) TCGA-95-7948-01 X 15605910 15605910 G C ACE2 Missense_Mutation p.I256M 0.05 deleterious(0.01) possibly_damaging(0.768) TCGA-95-7948-01 X 1714321 1714321 G C AKAP17A Missense_Mutation p.K269N 0.17 deleterious(0.03) unknown(0) TCGA-95-7948-01 X 18725777 18725777 G C PPEF1 Splice_Site 0.27 TCGA-95-7948-01 X 63445233 63445233 C G ASB12 Missense_Mutation p.D100H 0.12 deleterious(0) probably_damaging(0.999) TCGA-95-7948-01 X 70465569 70465569 C A ZMYM3 Nonsense_Mutation p.E937* 0.13 TCGA-95-7948-01 X 70823512 70823512 G A ACRC Missense_Mutation p.D129N 0.21 possibly_damaging(0.539) TCGA-95-7948-01 X 75004055 75004055 G T MAGEE2 Missense_Mutation p.P278T 0.09 deleterious(0) benign(0.399) TCGA-95-7948-01 X 96140097 96140097 G A RPA4 3'UTR 0.31 TCGA-95-8039-01 10 115335696 115335696 C A HABP2 Nonsense_Mutation p.C88* 0.25 TCGA-95-8039-01 10 13206194 13206194 C G MCM10 5'UTR 0.27 TCGA-95-8039-01 10 27520740 27520740 C A ACBD5 Missense_Mutation p.W104C 0.26 deleterious(0) probably_damaging(0.997) TCGA-95-8039-01 10 48428867 48428867 C T GDF10 Missense_Mutation p.R340H 0.15 deleterious(0.01) probably_damaging(0.988) TCGA-95-8039-01 10 52912933 52912933 T C PRKG1 Silent p.D107D 0.14 TCGA-95-8039-01 10 64136459 64136464 TGAGGC - ZNF365 In_Frame_Del p.E170_A171del 0.20 TCGA-95-8039-01 10 72520236 72520236 C A ADAMTS14 Missense_Mutation p.P1103H 0.22 deleterious(0.01) possibly_damaging(0.625) TCGA-95-8039-01 10 92656112 92656112 G A RPP30 Silent p.A220A 0.15 TCGA-95-8039-01 10 98080419 98080419 T G DNTT Missense_Mutation p.N184K 0.22 tolerated(0.1) probably_damaging(0.998) TCGA-95-8039-01 11 20417373 20417373 T G PRMT3 Missense_Mutation p.V142G 0.19 benign(0.02) TCGA-95-8039-01 11 5153038 5153038 A T OR52A5 Missense_Mutation p.L279M 0.20 tolerated(0.15) probably_damaging(0.973) TCGA-95-8039-01 11 65321675 65321675 G A LTBP3 Missense_Mutation p.P170S 0.13 tolerated(0.05) benign(0.006) TCGA-95-8039-01 11 68703838 68703851 CACACAGCATGGGG - IGHMBP2 Frame_Shift_Del p.F630Lfs*7 0.08 TCGA-95-8039-01 11 7530992 7530992 T G OLFML1 Missense_Mutation p.V261G 0.10 deleterious(0) benign(0.433) TCGA-95-8039-01 12 51863545 51863545 G T SLC4A8 Silent p.L499L 0.18 TCGA-95-8039-01 12 54348901 54348901 G T HOXC12 Missense_Mutation p.G63V 0.19 deleterious(0.01) probably_damaging(0.964) TCGA-95-8039-01 12 57864972 57864972 G A GLI1 Missense_Mutation p.E817K 0.18 deleterious(0.01) probably_damaging(0.993) TCGA-95-8039-01 12 57905595 57905595 A G MARS Missense_Mutation p.I495V 0.20 tolerated(0.07) probably_damaging(0.96) TCGA-95-8039-01 12 7586010 7586010 A G CD163L1 Silent p.H135H 0.21 TCGA-95-8039-01 12 988794 988794 C T WNK1 Missense_Mutation p.A810V 0.23 tolerated(0.07) possibly_damaging(0.893) TCGA-95-8039-01 13 32811893 32811893 C T FRY Missense_Mutation p.A2063V 0.38 deleterious(0) probably_damaging(0.955) TCGA-95-8039-01 13 76395684 76395684 T G LMO7 Missense_Mutation p.V627G 0.36 deleterious(0) probably_damaging(0.998) TCGA-95-8039-01 13 99171719 99171719 C A STK24 Missense_Mutation p.K29N 0.25 tolerated(0.13) benign(0.003) TCGA-95-8039-01 13 99907375 99907375 C G GPR18 Missense_Mutation p.C251S 0.20 tolerated(0.22) probably_damaging(0.947) TCGA-95-8039-01 13 99907848 99907848 G - GPR18 Frame_Shift_Del p.C94Afs*54 0.20 TCGA-95-8039-01 14 104205098 104205098 C A PPP1R13B Missense_Mutation p.A928S 0.25 deleterious(0.03) possibly_damaging(0.527) TCGA-95-8039-01 14 52520910 52520910 G A NID2 Silent p.S299S 0.22 TCGA-95-8039-01 15 42731878 42731878 T - ZNF106 Frame_Shift_Del p.E1277Kfs*14 0.26 TCGA-95-8039-01 15 51041856 51041856 G C SPPL2A Missense_Mutation p.L52V 0.23 deleterious(0.03) probably_damaging(0.955) TCGA-95-8039-01 15 54306626 54306626 A C UNC13C Missense_Mutation p.K509T 0.30 tolerated_low_confidence(0.47) benign(0.021) TCGA-95-8039-01 16 3016183 3016183 G A KREMEN2 Silent p.E104E 0.23 TCGA-95-8039-01 16 53190039 53190039 A G CHD9 Missense_Mutation p.N13S 0.12 benign(0.033) TCGA-95-8039-01 17 38151727 38151727 G A PSMD3 Missense_Mutation p.A423T 0.22 deleterious(0) probably_damaging(0.991) TCGA-95-8039-01 17 40722187 40722187 C G MLX Missense_Mutation p.H276D 0.19 deleterious(0) probably_damaging(0.998) TCGA-95-8039-01 17 40820225 40820225 C G PLEKHH3 Missense_Mutation p.D768H 0.30 deleterious_low_confidence(0.05) probably_damaging(0.947) TCGA-95-8039-01 17 65925581 65925581 G T BPTF Missense_Mutation p.G2043V 0.17 benign(0.053) TCGA-95-8039-01 17 73627675 73627675 G T RECQL5 Missense_Mutation p.Q435K 0.13 tolerated(1) benign(0) TCGA-95-8039-01 17 7579373 7579373 C T TP53 Missense_Mutation p.G105D 0.22 deleterious(0) probably_damaging(1) TCGA-95-8039-01 18 55862901 55862901 C T NEDD4L Intron 0.26 TCGA-95-8039-01 18 61602110 61602110 G C SERPINB10 Missense_Mutation p.W276C 0.19 deleterious(0) probably_damaging(1) TCGA-95-8039-01 18 6241433 6241433 T A L3MBTL4 Missense_Mutation p.K159I 0.16 deleterious(0) probably_damaging(1) TCGA-95-8039-01 18 6985611 6985611 T A LAMA1 Missense_Mutation p.N1804I 0.20 tolerated(0.17) possibly_damaging(0.71) TCGA-95-8039-01 19 10823271 10823271 C T QTRT1 Silent p.D276D 0.18 TCGA-95-8039-01 19 36015641 36015641 G T SBSN Missense_Mutation p.P574H 0.23 deleterious(0) probably_damaging(0.996) TCGA-95-8039-01 19 36351937 36351937 A C KIRREL2 Missense_Mutation p.Q352P 0.24 tolerated(0.16) possibly_damaging(0.664) TCGA-95-8039-01 19 4510609 4510609 C A PLIN4 Silent p.A1107A 0.29 TCGA-95-8039-01 19 51217526 51217526 C T SHANK1 Missense_Mutation p.E185K 0.21 possibly_damaging(0.754) TCGA-95-8039-01 19 53572735 53572735 C G ZNF160 Missense_Mutation p.R351T 0.31 tolerated(0.35) benign(0.157) TCGA-95-8039-01 1 108322068 108322068 G A VAV3 Missense_Mutation p.A123V 0.33 tolerated(0.12) benign(0.001) TCGA-95-8039-01 1 145273310 145273310 C T NOTCH2NL Missense_Mutation p.S55L 0.05 tolerated(1) benign(0.002) TCGA-95-8039-01 1 152327864 152327864 C A FLG2 Missense_Mutation p.G800C 0.07 unknown(0) TCGA-95-8039-01 1 156280403 156280403 C T CCT3 Silent p.L493L 0.32 TCGA-95-8039-01 1 235840796 235840796 T G LYST Missense_Mutation p.I3642L 0.10 tolerated(0.19) benign(0.019) TCGA-95-8039-01 1 248344313 248344313 G C OR2M2 Missense_Mutation p.L342F 0.32 tolerated_low_confidence(0.2) unknown(0) TCGA-95-8039-01 1 26392855 26392855 C T TRIM63 Missense_Mutation p.R79H 0.22 deleterious(0.02) probably_damaging(1) TCGA-95-8039-01 1 54483100 54483100 C T LDLRAD1 Missense_Mutation p.G8R 0.22 tolerated(0.35) benign(0.094) TCGA-95-8039-01 1 6150513 6150513 G T KCNAB2 Silent p.P193P 0.13 TCGA-95-8039-01 20 13753262 13753262 C G ESF1 Splice_Site p.X384_splice 0.27 TCGA-95-8039-01 20 18574431 18574431 T A DTD1 Missense_Mutation p.S34T 0.16 tolerated(0.1) benign(0.354) TCGA-95-8039-01 20 30309755 30309755 C T BCL2L1 Silent p.A89A 0.21 TCGA-95-8039-01 20 42680029 42680029 C A TOX2 Silent p.A165A 0.17 TCGA-95-8039-01 20 45188667 45188667 G T SLC13A3 Silent p.T601T 0.19 TCGA-95-8039-01 2 119603980 119603980 G A EN1 Missense_Mutation p.S255L 0.19 deleterious(0) benign(0.019) TCGA-95-8039-01 2 128389852 128389852 T G MYO7B Missense_Mutation p.W1735G 0.22 deleterious(0) probably_damaging(0.999) TCGA-95-8039-01 2 133175319 133175319 T G GPR39 Missense_Mutation p.L235R 0.15 deleterious(0) probably_damaging(0.999) TCGA-95-8039-01 2 152499796 152499796 C T NEB Silent p.E2676E 0.29 TCGA-95-8039-01 2 169781240 169781240 C T ABCB11 Missense_Mutation p.R1231Q 0.23 deleterious(0) probably_damaging(1) TCGA-95-8039-01 2 170531188 170531188 T C CCDC173 Missense_Mutation p.E187G 0.44 deleterious(0) benign(0.054) TCGA-95-8039-01 2 179529628 179529628 A T TTN Silent p.I12023I 0.23 TCGA-95-8039-01 2 186680101 186680101 G T FSIP2 Nonsense_Mutation p.E6866* 0.16 TCGA-95-8039-01 2 208632531 208632531 G A FZD5 Silent p.G311G 0.14 TCGA-95-8039-01 2 27426143 27426143 C T SLC5A6 Missense_Mutation p.E389K 0.15 tolerated(0.42) benign(0.016) TCGA-95-8039-01 2 27844223 27844223 A T ZNF512 Missense_Mutation p.E533D 0.18 tolerated_low_confidence(0.17) benign(0.001) TCGA-95-8039-01 2 85531118 85531118 A C TCF7L1 Silent p.P253P 0.25 TCGA-95-8039-01 2 97506529 97506529 C T ANKRD23 Missense_Mutation p.D141N 0.21 deleterious(0.03) benign(0.335) TCGA-95-8039-01 3 121825239 121825239 G A CD86 Missense_Mutation p.V199I 0.20 tolerated(0.13) possibly_damaging(0.787) TCGA-95-8039-01 3 124449468 124449468 G A UMPS Silent p.L50L 0.21 TCGA-95-8039-01 3 157155312 157155312 C T PTX3 Silent p.C47C 0.08 TCGA-95-8039-01 3 173996886 173996886 A C NLGN1 Silent p.I365I 0.19 TCGA-95-8039-01 3 192517350 192517350 C A MB21D2 Missense_Mutation p.D101Y 0.15 deleterious(0.02) possibly_damaging(0.453) TCGA-95-8039-01 3 48298278 48298278 C A ZNF589 Intron 0.21 TCGA-95-8039-01 4 113527180 113527181 TT G C4orf21 Frame_Shift_Del p.K929Qfs*15 0.26 TCGA-95-8039-01 4 114254316 114254316 G C ANK2 Missense_Mutation p.D1111H 0.20 possibly_damaging(0.866) TCGA-95-8039-01 4 140300008 140300008 G C NAA15 Missense_Mutation p.A719P 0.21 tolerated(0.19) benign(0.001) TCGA-95-8039-01 4 140300009 140300009 G T NAA15 Splice_Site p.X719_splice 0.21 TCGA-95-8039-01 4 141545328 141545328 C A TBC1D9 Missense_Mutation p.W1007L 0.14 tolerated(0.18) probably_damaging(0.993) TCGA-95-8039-01 4 16900066 16900066 C T LDB2 Missense_Mutation p.G15S 0.22 tolerated(0.5) benign(0.022) TCGA-95-8039-01 4 186336883 186336883 G A UFSP2 Missense_Mutation p.P158S 0.20 tolerated(0.36) benign(0.005) TCGA-95-8039-01 4 70361160 70361160 T C UGT2B4 Silent p.L140L 0.23 TCGA-95-8039-01 5 131546065 131546065 T A P4HA2 Silent p.S207S 0.20 TCGA-95-8039-01 5 148206584 148206584 C T ADRB2 Silent p.L64L 0.32 TCGA-95-8039-01 5 153382414 153382414 G A FAM114A2 Missense_Mutation p.S370L 0.13 deleterious(0) benign(0.049) TCGA-95-8039-01 5 175995996 175995996 C T CDHR2 Silent p.S100S 0.10 TCGA-95-8039-01 5 21842370 21842370 T A CDH12 Missense_Mutation p.Q238H 0.16 deleterious(0) probably_damaging(0.999) TCGA-95-8039-01 5 24488058 24488058 G A CDH10 Missense_Mutation p.T694M 0.09 tolerated(0.2) possibly_damaging(0.447) TCGA-95-8039-01 5 39127875 39127875 A C FYB Nonsense_Mutation p.Y635* 0.14 TCGA-95-8039-01 5 57751605 57751605 G A PLK2 Silent p.C462C 0.17 TCGA-95-8039-01 6 132967043 132967043 T C TAAR1 Missense_Mutation p.I34V 0.03 tolerated(0.17) benign(0.263) TCGA-95-8039-01 6 138635035 138635035 A G KIAA1244 Missense_Mutation p.D1435G 0.20 deleterious(0.03) possibly_damaging(0.818) TCGA-95-8039-01 6 150569944 150569944 G A PPP1R14C Silent p.K162K 0.18 TCGA-95-8039-01 6 30313016 30313016 G A RPP21 Intron 0.33 TCGA-95-8039-01 6 32010132 32010132 T C TNXB Missense_Mutation p.Q502R 0.13 deleterious(0.01) probably_damaging(0.932) TCGA-95-8039-01 6 32170178 32170178 C G NOTCH4 Missense_Mutation p.G1144R 0.15 deleterious(0) probably_damaging(1) TCGA-95-8039-01 6 43008794 43008794 C T CUL7 Missense_Mutation p.R1306Q 0.13 tolerated(0.3) possibly_damaging(0.596) TCGA-95-8039-01 7 102585036 102585036 A - LRRC17 Frame_Shift_Del p.I437Lfs*3 0.22 TCGA-95-8039-01 7 143175140 143175140 C T TAS2R41 Nonsense_Mutation p.Q59* 0.16 TCGA-95-8039-01 7 143701254 143701254 G T OR6B1 Silent p.L55L 0.32 TCGA-95-8039-01 7 14378302 14378302 A G DGKB Missense_Mutation p.S655P 0.13 deleterious(0.04) probably_damaging(0.974) TCGA-95-8039-01 7 45104153 45104153 G A CCM2 Missense_Mutation p.G148E 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-95-8039-01 7 88424068 88424068 T A C7orf62 Missense_Mutation p.K63N 0.33 tolerated(0.06) benign(0.008) TCGA-95-8039-01 8 110587637 110587637 G C SYBU Missense_Mutation p.P497R 0.13 deleterious(0.03) probably_damaging(0.985) TCGA-95-8039-01 8 133895218 133895218 G A TG Missense_Mutation p.R350Q 0.12 tolerated(0.1) benign(0.161) TCGA-95-8039-01 8 82439275 82439275 C G FABP12 Missense_Mutation p.V110L 0.09 tolerated(0.15) benign(0.112) TCGA-95-8039-01 8 86019516 86019516 C T LRRCC1 5'UTR 0.24 TCGA-95-8039-01 8 92988173 92988173 A T RUNX1T1 Silent p.P447P 0.17 TCGA-95-8039-01 9 100849584 100849584 G C TRIM14 3'UTR 0.23 TCGA-95-8039-01 9 115961190 115961190 G A FKBP15 Missense_Mutation p.T221I 0.33 deleterious(0.01) probably_damaging(1) TCGA-95-8039-01 9 140444731 140444731 C T PNPLA7 5'UTR 0.17 TCGA-95-8039-01 9 34514436 34514436 C A DNAI1 Silent p.A538A 0.25 TCGA-95-8039-01 9 79441545 79441545 T G PRUNE2 Silent p.P204P 0.39 TCGA-95-8039-01 9 85863200 85863200 T C FRMD3 Missense_Mutation p.E476G 0.31 tolerated(0.14) benign(0) TCGA-95-8039-01 X 101138518 101138518 C A ZMAT1 Missense_Mutation p.E627D 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-95-8039-01 X 127186089 127186089 G A ACTRT1 Missense_Mutation p.H33Y 0.41 tolerated(1) possibly_damaging(0.728) TCGA-95-8039-01 X 48858658 48858658 C T GRIPAP1 5'UTR 0.34 TCGA-95-8494-01 10 100185701 100185701 A T HPS1 Silent p.P343P 0.33 TCGA-95-8494-01 10 122648679 122648679 G A WDR11 Silent p.L737L 0.16 TCGA-95-8494-01 10 29777528 29777528 A T SVIL Splice_Site p.X1450_splice 0.56 TCGA-95-8494-01 10 50954884 50954884 C A OGDHL Missense_Mutation p.G403V 0.29 deleterious(0) probably_damaging(1) TCGA-95-8494-01 10 75011591 75011591 G C MRPS16 Silent p.L68L 0.13 TCGA-95-8494-01 10 98170231 98170231 G A TLL2 Missense_Mutation p.A350V 0.39 tolerated(0.09) benign(0.006) TCGA-95-8494-01 11 113860378 113860378 C T HTR3A Missense_Mutation p.R482C 0.21 tolerated(0.05) possibly_damaging(0.828) TCGA-95-8494-01 11 12265536 12265536 T G MICAL2 Missense_Mutation p.N887K 0.53 tolerated_low_confidence(0.17) benign(0.11) TCGA-95-8494-01 11 123676164 123676164 C T OR6M1 Silent p.L298L 0.17 TCGA-95-8494-01 11 57144265 57144265 G C PRG3 3'UTR 0.38 TCGA-95-8494-01 11 63438773 63438773 G C ATL3 Nonsense_Mutation p.S12* 0.20 TCGA-95-8494-01 11 64055813 64055813 C T GPR137 Missense_Mutation p.A320V 0.19 deleterious(0.04) probably_damaging(0.934) TCGA-95-8494-01 11 65268315 65268317 GGG - MALAT1 RNA 0.52 TCGA-95-8494-01 11 66204683 66204683 C T MRPL11 Missense_Mutation p.R122H 0.39 tolerated(0.07) possibly_damaging(0.489) TCGA-95-8494-01 11 92534952 92534952 G A FAT3 Missense_Mutation p.A2925T 0.17 benign(0.004) TCGA-95-8494-01 12 106704939 106704939 C T TCP11L2 Missense_Mutation p.S29L 0.15 tolerated(0.08) benign(0.416) TCGA-95-8494-01 12 108003971 108003971 G A BTBD11 Missense_Mutation p.D550N 0.17 deleterious(0.01) probably_damaging(0.964) TCGA-95-8494-01 12 122826036 122826036 G C CLIP1 Missense_Mutation p.S572C 0.16 deleterious(0) probably_damaging(0.995) TCGA-95-8494-01 12 19436477 19436477 G A PLEKHA5 Missense_Mutation p.R526Q 0.13 tolerated(0.1) probably_damaging(0.997) TCGA-95-8494-01 12 21015720 21015720 C T SLCO1B3 Missense_Mutation p.P220L 0.03 tolerated(0.09) benign(0.084) TCGA-95-8494-01 12 29786135 29786135 A T TMTC1 Missense_Mutation p.I358N 0.31 deleterious(0.01) benign(0.212) TCGA-95-8494-01 13 20220962 20220962 G C MPHOSPH8 Missense_Mutation p.R250T 0.21 deleterious_low_confidence(0) benign(0.357) TCGA-95-8494-01 14 24679955 24679955 C T CHMP4A Missense_Mutation p.E170K 0.28 deleterious(0.01) benign(0.18) TCGA-95-8494-01 14 24785064 24785064 C G LTB4R Silent p.L69L 0.20 TCGA-95-8494-01 14 74343732 74343732 C A PTGR2 Nonsense_Mutation p.S127* 0.22 TCGA-95-8494-01 15 32912349 32912349 C G ARHGAP11A Missense_Mutation p.S57C 0.18 tolerated(0.15) benign(0.008) TCGA-95-8494-01 15 48450996 48450996 C T MYEF2 Missense_Mutation p.E281K 0.07 deleterious(0.02) probably_damaging(0.963) TCGA-95-8494-01 15 84566694 84566694 C G ADAMTSL3 Missense_Mutation p.P518A 0.18 deleterious(0.03) probably_damaging(1) TCGA-95-8494-01 16 30567092 30567092 G A ZNF764 Missense_Mutation p.S217F 0.18 tolerated(0.18) probably_damaging(0.981) TCGA-95-8494-01 16 30567106 30567106 G A ZNF764 Silent p.F212F 0.22 TCGA-95-8494-01 16 3707076 3707076 C T DNASE1 Silent p.D171D 0.17 TCGA-95-8494-01 16 66947161 66947161 C T CDH16 Silent p.Q309Q 0.22 TCGA-95-8494-01 16 70415747 70415747 C G ST3GAL2 Missense_Mutation p.G300R 0.07 possibly_damaging(0.827) TCGA-95-8494-01 16 85667701 85667701 G A GSE1 Silent p.A63A 0.19 TCGA-95-8494-01 17 10355577 10355577 C T MYH4 Missense_Mutation p.R1140H 0.49 deleterious(0.01) probably_damaging(1) TCGA-95-8494-01 17 19648427 19648427 C T ALDH3A1 Missense_Mutation p.E6K 0.38 tolerated(0.38) benign(0.321) TCGA-95-8494-01 17 26821425 26821425 G A SLC13A2 Silent p.L450L 0.25 TCGA-95-8494-01 17 40842164 40842164 C T CNTNAP1 Silent p.F598F 0.10 TCGA-95-8494-01 17 74006262 74006262 C T EVPL Silent p.K1008K 0.13 TCGA-95-8494-01 17 74006263 74006263 T A EVPL Missense_Mutation p.K1008M 0.13 deleterious(0.02) benign(0.073) TCGA-95-8494-01 17 74007749 74007749 C A EVPL Nonsense_Mutation p.E857* 0.12 TCGA-95-8494-01 17 7578534 7578534 C A TP53 Missense_Mutation p.K132N 0.54 deleterious(0) probably_damaging(1) TCGA-95-8494-01 17 79409908 79409908 G A RP11-1055B8.7 Silent p.P511P 0.05 TCGA-95-8494-01 17 79914823 79914823 G A NOTUM Missense_Mutation p.R275C 0.18 deleterious(0.01) possibly_damaging(0.832) TCGA-95-8494-01 18 14537814 14537814 C T POTEC Missense_Mutation p.E266K 0.13 deleterious(0) possibly_damaging(0.663) TCGA-95-8494-01 18 29453502 29453502 C T TRAPPC8 Splice_Site p.X652_splice 0.17 TCGA-95-8494-01 18 42530226 42530226 G A SETBP1 Silent p.E307E 0.45 TCGA-95-8494-01 18 43450707 43450707 T C EPG5 Missense_Mutation p.D2017G 0.16 tolerated(0.2) probably_damaging(0.981) TCGA-95-8494-01 19 1467098 1467098 G A APC2 Silent p.E1266E 0.17 TCGA-95-8494-01 19 17922596 17922596 G A B3GNT3 Missense_Mutation p.E262K 0.31 tolerated(0.19) benign(0.15) TCGA-95-8494-01 19 42133303 42133303 C T CEACAM4 Missense_Mutation p.G10E 0.29 deleterious(0.02) benign(0.407) TCGA-95-8494-01 19 54445692 54445692 C T CACNG7 3'UTR 0.43 TCGA-95-8494-01 19 55453116 55453116 G A NLRP7 Intron 0.48 TCGA-95-8494-01 1 149763001 149763001 G A FCGR1A Silent p.L351L 0.19 TCGA-95-8494-01 1 157738327 157738327 G A FCRL2 Missense_Mutation p.R254C 0.35 deleterious(0) probably_damaging(0.938) TCGA-95-8494-01 1 16914278 16914278 C T NBPF1 Missense_Mutation p.E170K 0.13 tolerated(0.09) possibly_damaging(0.486) TCGA-95-8494-01 1 175066664 175066664 C G TNN Missense_Mutation p.S567C 0.16 deleterious(0) probably_damaging(0.992) TCGA-95-8494-01 1 183201964 183201964 C T LAMC2 Missense_Mutation p.A731V 0.16 deleterious(0.02) benign(0.12) TCGA-95-8494-01 1 19166219 19166219 G C TAS1R2 Silent p.L798L 0.15 TCGA-95-8494-01 1 192544909 192544909 T G RGS1 5'UTR 0.27 TCGA-95-8494-01 1 242277283 242277283 C G PLD5 Missense_Mutation p.D327H 0.18 tolerated(0.08) probably_damaging(0.933) TCGA-95-8494-01 1 3809444 3809444 C G C1orf174 Intron 0.28 TCGA-95-8494-01 1 46211802 46211802 G A IPP Silent p.F94F 0.23 TCGA-95-8494-01 1 74902157 74902157 G T TNNI3K Splice_Site p.X710_splice 0.11 TCGA-95-8494-01 1 78435673 78435673 T A FUBP1 Silent p.A49A 0.20 TCGA-95-8494-01 1 99771602 99771602 G C LPPR4 Missense_Mutation p.R443P 0.17 deleterious(0) probably_damaging(0.999) TCGA-95-8494-01 20 11899001 11899001 C G BTBD3 Silent p.S26S 0.33 TCGA-95-8494-01 20 48259055 48259055 G A B4GALT5 Missense_Mutation p.P186S 0.33 deleterious(0) probably_damaging(0.989) TCGA-95-8494-01 22 31850286 31850286 C T EIF4ENIF1 Silent p.K452K 0.40 TCGA-95-8494-01 2 109099619 109099619 A C GCC2 Missense_Mutation p.K1149N 0.26 deleterious(0) benign(0.118) TCGA-95-8494-01 2 121036307 121036307 G A RALB Missense_Mutation p.G23R 0.15 deleterious(0.01) probably_damaging(0.995) TCGA-95-8494-01 2 128341856 128341856 C T MYO7B Silent p.L501L 0.18 TCGA-95-8494-01 2 141242971 141242971 A G LRP1B Silent p.T3122T 0.16 TCGA-95-8494-01 2 155099252 155099252 G T GALNT13 Nonsense_Mutation p.E174* 0.07 TCGA-95-8494-01 2 168102133 168102133 G A XIRP2 Missense_Mutation p.D1411N 0.16 benign(0.16) TCGA-95-8494-01 2 179579976 179579976 C T TTN Missense_Mutation p.R8646H 0.34 TCGA-95-8494-01 2 191898689 191898689 C A STAT4 Nonsense_Mutation p.E555* 0.12 TCGA-95-8494-01 2 203644330 203644330 G A ICA1L Silent p.L459L 0.25 TCGA-95-8494-01 2 209113202 209113202 A G IDH1 Missense_Mutation p.I102T 0.12 tolerated_low_confidence(0.05) benign(0.044) TCGA-95-8494-01 2 220072627 220072627 G T ZFAND2B Nonsense_Mutation p.E101* 0.17 TCGA-95-8494-01 2 228560705 228560705 C T SLC19A3 Missense_Mutation p.G358S 0.14 tolerated(0.07) possibly_damaging(0.453) TCGA-95-8494-01 2 230662490 230662490 G A TRIP12 Silent p.F1105F 0.10 TCGA-95-8494-01 2 26652621 26652621 C G DRC1 Silent p.L222L 0.18 TCGA-95-8494-01 2 31467291 31467291 G A EHD3 Missense_Mutation p.A127T 0.25 tolerated(0.34) benign(0.029) TCGA-95-8494-01 2 58449124 58449124 C A FANCL Missense_Mutation p.Q109H 0.21 tolerated(0.1) benign(0.012) TCGA-95-8494-01 3 123694228 123694228 C T ROPN1 Missense_Mutation p.V132I 0.33 tolerated(0.18) possibly_damaging(0.679) TCGA-95-8494-01 3 164704982 164704982 G A SI Missense_Mutation p.A1714V 0.14 deleterious(0.01) benign(0.041) TCGA-95-8494-01 3 171338216 171338216 G T PLD1 Missense_Mutation p.H896Q 0.14 deleterious(0.02) possibly_damaging(0.673) TCGA-95-8494-01 3 183907648 183907648 C G ABCF3 Missense_Mutation p.F440L 0.30 deleterious(0) probably_damaging(1) TCGA-95-8494-01 3 187447543 187447543 C T BCL6 Missense_Mutation p.R217Q 0.20 tolerated(0.3) probably_damaging(0.99) TCGA-95-8494-01 3 27760382 27760382 C T EOMES Missense_Mutation p.M387I 0.19 deleterious(0.01) probably_damaging(0.989) TCGA-95-8494-01 3 52954585 52954585 C A SFMBT1 Missense_Mutation p.G447V 0.20 deleterious(0) possibly_damaging(0.575) TCGA-95-8494-01 3 73047268 73047268 G C PPP4R2 Silent p.L25L 0.13 TCGA-95-8494-01 3 75986735 75986735 G A ROBO2 Missense_Mutation p.G31R 0.08 tolerated_low_confidence(0.06) unknown(0) TCGA-95-8494-01 3 77089948 77089948 G A ROBO2 Intron 0.18 TCGA-95-8494-01 3 97868994 97868994 C T OR5H14 Silent p.L255L 0.17 TCGA-95-8494-01 4 177116675 177116675 C T SPATA4 Silent p.Q13Q 0.19 TCGA-95-8494-01 4 2757762 2757762 G A TNIP2 Silent p.A85A 0.21 TCGA-95-8494-01 5 101735275 101735275 C T SLCO6A1 Missense_Mutation p.V600I 0.15 tolerated(0.85) benign(0) TCGA-95-8494-01 5 111576490 111576490 G C EPB41L4A Missense_Mutation p.F271L 0.13 deleterious(0.01) possibly_damaging(0.559) TCGA-95-8494-01 5 138723467 138723467 C G MZB1 Missense_Mutation p.R186T 0.16 deleterious_low_confidence(0) possibly_damaging(0.599) TCGA-95-8494-01 5 140802867 140802867 G A PCDHGA11 Silent p.S691S 0.11 TCGA-95-8494-01 5 160025779 160025779 C G ATP10B Missense_Mutation p.E1188Q 0.13 tolerated(0.09) benign(0.117) TCGA-95-8494-01 5 170883549 170883549 G A FGF18 Missense_Mutation p.G122S 0.31 deleterious(0.04) possibly_damaging(0.548) TCGA-95-8494-01 5 26902807 26902807 G T CDH9 Missense_Mutation p.T344N 0.21 tolerated(0.07) benign(0.001) TCGA-95-8494-01 5 37816164 37816164 C T GDNF Silent p.L92L 0.10 TCGA-95-8494-01 5 54460038 54460038 G A GPX8 Missense_Mutation p.D208N 0.17 deleterious(0) benign(0.332) TCGA-95-8494-01 5 70812024 70812024 G A BDP1 Missense_Mutation p.E1596K 0.16 deleterious(0.02) benign(0.169) TCGA-95-8494-01 6 135776901 135776901 C T AHI1 Missense_Mutation p.E439K 0.31 deleterious(0.01) benign(0.424) TCGA-95-8494-01 6 136596780 136596780 T G BCLAF1 Missense_Mutation p.K581T 0.04 deleterious(0.01) possibly_damaging(0.607) TCGA-95-8494-01 6 42200423 42200423 C A TRERF1 Missense_Mutation p.G1092C 0.15 deleterious(0) probably_damaging(0.991) TCGA-95-8494-01 6 7378910 7378910 A C CAGE1 Silent p.A209A 0.44 TCGA-95-8494-01 7 100334138 100334138 G A ZAN Missense_Mutation p.A47T 0.35 benign(0.022) TCGA-95-8494-01 7 11514014 11514014 C G THSD7A Missense_Mutation p.Q733H 0.07 deleterious(0) possibly_damaging(0.465) TCGA-95-8494-01 7 129053479 129053479 A T AHCYL2 Missense_Mutation p.N471Y 0.22 deleterious(0) probably_damaging(0.971) TCGA-95-8494-01 7 141635717 141635717 C T CLEC5A Missense_Mutation p.R81K 0.08 tolerated(0.58) benign(0.001) TCGA-95-8494-01 7 142223887 142223887 A T TRBV11-1 Missense_Mutation p.S94T 0.06 deleterious(0.01) probably_damaging(0.986) TCGA-95-8494-01 7 149430610 149430610 C T KRBA1 Missense_Mutation p.T855I 0.27 deleterious(0.03) probably_damaging(0.986) TCGA-95-8494-01 7 149493701 149493701 C T SSPO RNA 0.11 TCGA-95-8494-01 7 154684391 154684391 C A DPP6 3'UTR 0.27 TCGA-95-8494-01 7 47323419 47323432 TGAGGGACTCCATC - TNS3 Frame_Shift_Del p.E1320Dfs*89 0.49 TCGA-95-8494-01 7 77558459 77558459 C T PHTF2 Missense_Mutation p.R351C 0.11 deleterious(0.01) probably_damaging(0.988) TCGA-95-8494-01 8 144941649 144941649 C A EPPK1 Missense_Mutation p.A1925S 0.28 benign(0.005) TCGA-95-8494-01 8 48874123 48874123 G A MCM4 Missense_Mutation p.E40K 0.36 tolerated(0.61) benign(0.023) TCGA-95-8494-01 8 68184169 68184169 G A ARFGEF1 Missense_Mutation p.S447F 0.14 deleterious(0) probably_damaging(0.987) TCGA-95-8494-01 9 103046859 103046859 A T INVS Missense_Mutation p.Q681L 0.21 tolerated_low_confidence(0.13) benign(0.097) TCGA-95-8494-01 9 125797225 125797225 G C GPR21 Missense_Mutation p.R127T 0.35 deleterious(0) probably_damaging(1) TCGA-95-8494-01 9 131023764 131023764 C T GOLGA2 Nonsense_Mutation p.W407* 0.16 TCGA-95-8494-01 9 16437286 16437286 C T BNC2 Silent p.E302E 0.27 TCGA-95-8494-01 X 101395632 101395632 A C TCEAL6 3'UTR 0.68 TCGA-95-8494-01 X 119249500 119249500 C A RHOXF1 Silent p.A91A 0.43 TCGA-95-8494-01 X 127185028 127185028 C T ACTRT1 3'UTR 0.17 TCGA-95-8494-01 X 154185268 154185268 G A F8 Silent p.I572I 0.16 TCGA-95-8494-01 X 54107803 54107803 C T FAM120C Missense_Mutation p.R977Q 0.37 tolerated(0.17) benign(0.016) TCGA-95-8494-01 X 69563592 69563592 G C KIF4A Missense_Mutation p.E436Q 0.60 tolerated(0.32) benign(0.057) TCGA-95-A4VK-01 10 128840908 128840908 A T DOCK1 Missense_Mutation p.D656V 0.26 deleterious(0) benign(0.001) TCGA-95-A4VK-01 10 25284702 25284702 T C ENKUR Missense_Mutation p.N107S 0.24 tolerated(0.25) benign(0.003) TCGA-95-A4VK-01 10 25288332 25288332 G T ENKUR Missense_Mutation p.P74H 0.23 deleterious(0.02) benign(0.015) TCGA-95-A4VK-01 10 26505681 26505681 C A GAD2 5'UTR 0.25 TCGA-95-A4VK-01 10 37508634 37508634 T C ANKRD30A Missense_Mutation p.W1276R 0.18 deleterious(0.02) possibly_damaging(0.861) TCGA-95-A4VK-01 10 38121333 38121333 C A ZNF248 Missense_Mutation p.G317V 0.08 deleterious(0.01) possibly_damaging(0.621) TCGA-95-A4VK-01 10 47087064 47087064 G T NPY4R Missense_Mutation p.C94F 0.18 deleterious(0) probably_damaging(1) TCGA-95-A4VK-01 10 48388549 48388549 C T RBP3 Missense_Mutation p.A777T 0.21 tolerated(0.06) possibly_damaging(0.787) TCGA-95-A4VK-01 10 52067896 52067896 C T SGMS1 Missense_Mutation p.R303Q 0.26 tolerated(0.12) probably_damaging(0.957) TCGA-95-A4VK-01 10 61846512 61846512 G A ANK3 Missense_Mutation p.P1224L 0.25 possibly_damaging(0.842) TCGA-95-A4VK-01 10 64565041 64565041 A G ADO Silent p.T74T 0.25 TCGA-95-A4VK-01 10 68686967 68686967 G C LRRTM3 Missense_Mutation p.S98T 0.19 tolerated(0.4) benign(0.06) TCGA-95-A4VK-01 10 86132045 86132045 G T CCSER2 Missense_Mutation p.D413Y 0.09 deleterious(0) probably_damaging(1) TCGA-95-A4VK-01 10 87628883 87628883 T C GRID1 Missense_Mutation p.T279A 0.25 deleterious(0.03) benign(0.006) TCGA-95-A4VK-01 10 96361404 96361404 A G HELLS 3'UTR 0.29 TCGA-95-A4VK-01 10 96698553 96698553 G C CYP2C9 Silent p.V38V 0.18 TCGA-95-A4VK-01 10 96701771 96701771 G C CYP2C9 Missense_Mutation p.G109R 0.25 deleterious(0.02) benign(0.276) TCGA-95-A4VK-01 10 98108059 98108059 G T OPALIN Missense_Mutation p.P79H 0.09 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-95-A4VK-01 11 128807551 128807551 G T TP53AIP1 Intron 0.31 TCGA-95-A4VK-01 11 27384611 27384611 C A CCDC34 Missense_Mutation p.G44V 0.24 deleterious(0) possibly_damaging(0.578) TCGA-95-A4VK-01 11 45275887 45275887 G T SYT13 Missense_Mutation p.P160T 0.19 deleterious(0.01) probably_damaging(0.965) TCGA-95-A4VK-01 11 47819348 47819348 C T NUP160 Missense_Mutation p.R1091H 0.21 deleterious(0) probably_damaging(0.999) TCGA-95-A4VK-01 11 48286285 48286285 A T OR4X1 Missense_Mutation p.E291D 0.32 deleterious(0.04) benign(0.109) TCGA-95-A4VK-01 11 5274423 5274423 G T HBG2 3'UTR 0.23 TCGA-95-A4VK-01 11 55110864 55110864 A T OR4A16 Missense_Mutation p.Y63F 0.22 tolerated_low_confidence(0.41) benign(0.005) TCGA-95-A4VK-01 11 55595330 55595330 G T OR5L2 Missense_Mutation p.M212I 0.25 tolerated(0.29) benign(0.001) TCGA-95-A4VK-01 11 55606469 55606469 C A OR5D16 Missense_Mutation p.P81H 0.26 deleterious(0) probably_damaging(0.98) TCGA-95-A4VK-01 11 56185150 56185150 G T OR5R1 Missense_Mutation p.L187M 0.25 tolerated(0.09) probably_damaging(1) TCGA-95-A4VK-01 11 56380368 56380368 C A OR5M1 Missense_Mutation p.G204V 0.25 deleterious(0.01) probably_damaging(0.965) TCGA-95-A4VK-01 11 56380369 56380369 C A OR5M1 Missense_Mutation p.G204C 0.24 deleterious(0) probably_damaging(0.99) TCGA-95-A4VK-01 11 57004114 57004114 C T APLNR Missense_Mutation p.G122D 0.10 tolerated(0.07) probably_damaging(0.969) TCGA-95-A4VK-01 11 5862768 5862768 C A OR52E6 Missense_Mutation p.M120I 0.29 deleterious(0.01) benign(0.004) TCGA-95-A4VK-01 11 58892708 58892708 G A FAM111B Missense_Mutation p.V380I 0.04 tolerated(1) benign(0.001) TCGA-95-A4VK-01 11 62288374 62288374 G C AHNAK Silent p.P4505P 0.08 TCGA-95-A4VK-01 11 62457842 62457842 G A BSCL2 Silent p.S462S 0.24 TCGA-95-A4VK-01 11 63767023 63767023 A T MACROD1 Missense_Mutation p.C266S 0.12 tolerated(0.08) possibly_damaging(0.503) TCGA-95-A4VK-01 11 64111772 64111772 G T CCDC88B Nonsense_Mutation p.E587* 0.19 TCGA-95-A4VK-01 11 64519430 64519430 G C PYGM Silent p.L578L 0.24 TCGA-95-A4VK-01 11 65124212 65124212 G A TIGD3 Silent p.R311R 0.29 TCGA-95-A4VK-01 11 71850846 71850846 G T FOLR3 Missense_Mutation p.A279S 0.18 tolerated(0.13) benign(0.082) TCGA-95-A4VK-01 11 88027450 88027450 A G CTSC Silent p.V372V 0.23 TCGA-95-A4VK-01 12 11214037 11214037 A G TAS2R46 Missense_Mutation p.L286P 0.22 deleterious(0.01) probably_damaging(0.955) TCGA-95-A4VK-01 12 129558447 129558447 G C TMEM132D Nonsense_Mutation p.Y1091* 0.22 TCGA-95-A4VK-01 12 21918992 21918992 T G KCNJ8 Missense_Mutation p.I314L 0.21 tolerated(1) benign(0.013) TCGA-95-A4VK-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.14 deleterious(0) possibly_damaging(0.479) TCGA-95-A4VK-01 12 27849586 27849586 G T REP15 Missense_Mutation p.A31S 0.28 deleterious(0.01) benign(0.138) TCGA-95-A4VK-01 12 31435711 31435711 C G FAM60A Missense_Mutation p.A201P 0.22 tolerated(0.36) benign(0) TCGA-95-A4VK-01 12 41966358 41966358 G T PDZRN4 Missense_Mutation p.D593Y 0.28 deleterious(0) possibly_damaging(0.721) TCGA-95-A4VK-01 12 42706924 42706924 C A ZCRB1 Missense_Mutation p.R200L 0.22 tolerated(0.08) benign(0.027) TCGA-95-A4VK-01 12 43846479 43846479 A G ADAMTS20 Missense_Mutation p.Y594H 0.30 deleterious(0) probably_damaging(0.986) TCGA-95-A4VK-01 12 48152157 48152157 C T RAPGEF3 Intron 0.30 TCGA-95-A4VK-01 12 4919525 4919525 G T KCNA6 Silent p.L106L 0.21 TCGA-95-A4VK-01 12 54757622 54757622 G T GPR84 Missense_Mutation p.S5Y 0.36 deleterious(0) possibly_damaging(0.736) TCGA-95-A4VK-01 12 54793692 54793692 C - ITGA5 Frame_Shift_Del p.E895Kfs*15 0.16 TCGA-95-A4VK-01 12 54914979 54914979 G T NCKAP1L Missense_Mutation p.C612F 0.21 tolerated(0.08) possibly_damaging(0.511) TCGA-95-A4VK-01 12 54914980 54914980 C T NCKAP1L Silent p.C612C 0.21 TCGA-95-A4VK-01 12 56398798 56398798 A G SUOX Missense_Mutation p.Y542C 0.26 tolerated(0.24) benign(0.276) TCGA-95-A4VK-01 12 63963124 63963124 C A DPY19L2 Missense_Mutation p.R669L 0.20 deleterious(0) probably_damaging(0.99) TCGA-95-A4VK-01 12 88912645 88912645 C A KITLG Splice_Site p.X65_splice 0.29 TCGA-95-A4VK-01 13 103473386 103473386 G T BIVM-ERCC5 Splice_Site p.X174_splice 0.18 TCGA-95-A4VK-01 13 38266344 38266344 G T TRPC4 Silent p.V342V 0.38 TCGA-95-A4VK-01 13 41341004 41341004 C A MRPS31 Missense_Mutation p.M106I 0.20 deleterious(0) possibly_damaging(0.513) TCGA-95-A4VK-01 13 64321102 64321102 G T AL445989.1 Missense_Mutation p.G57C 0.56 unknown(0) TCGA-95-A4VK-01 14 101506611 101506611 C A MIR654 RNA 0.36 TCGA-95-A4VK-01 14 102548483 102548483 G C HSP90AA1 Missense_Mutation p.A807G 0.25 tolerated_low_confidence(0.07) unknown(0) TCGA-95-A4VK-01 14 102918770 102918770 G T TECPR2 Missense_Mutation p.C1149F 0.19 tolerated(1) benign(0) TCGA-95-A4VK-01 14 23826418 23826418 G C EFS 3'UTR 0.26 TCGA-95-A4VK-01 14 24040372 24040372 G A JPH4 Missense_Mutation p.P523L 0.22 deleterious(0.01) benign(0.039) TCGA-95-A4VK-01 14 31191118 31191118 C T SCFD1 Nonsense_Mutation p.Q589* 0.31 TCGA-95-A4VK-01 14 63175026 63175026 C A KCNH5 Missense_Mutation p.G723C 0.24 deleterious(0) possibly_damaging(0.817) TCGA-95-A4VK-01 14 70515614 70515614 G A SLC8A3 Silent p.A759A 0.22 TCGA-95-A4VK-01 14 70634938 70634938 G T SLC8A3 Missense_Mutation p.P68T 0.25 tolerated(0.36) benign(0.368) TCGA-95-A4VK-01 14 77765851 77765851 G A POMT2 Silent p.P290P 0.15 TCGA-95-A4VK-01 14 79270125 79270125 T A NRXN3 Missense_Mutation p.L363Q 0.17 deleterious(0) probably_damaging(0.996) TCGA-95-A4VK-01 14 92909071 92909071 C A SLC24A4 Missense_Mutation p.H165N 0.24 deleterious(0.04) possibly_damaging(0.777) TCGA-95-A4VK-01 14 94395203 94395203 T A FAM181A Missense_Mutation p.L253Q 0.28 tolerated(0.62) benign(0.033) TCGA-95-A4VK-01 15 25420075 25420075 G T SNORD115-3 RNA 0.22 TCGA-95-A4VK-01 15 25448407 25448407 G T SNORD115-18 RNA 0.21 TCGA-95-A4VK-01 15 25467574 25467574 C T SNORD115-28 RNA 0.24 TCGA-95-A4VK-01 15 26806273 26806273 T C GABRB3 Missense_Mutation p.T296A 0.09 deleterious(0.04) possibly_damaging(0.859) TCGA-95-A4VK-01 15 33936593 33936593 A G RYR3 Missense_Mutation p.Y1213C 0.19 probably_damaging(0.962) TCGA-95-A4VK-01 15 35045465 35045465 G T GJD2 Silent p.P60P 0.24 TCGA-95-A4VK-01 15 65684551 65684551 C A IGDCC4 Silent p.G681G 0.29 TCGA-95-A4VK-01 15 69011847 69011847 G A CORO2B Missense_Mutation p.G423R 0.27 deleterious(0.05) probably_damaging(0.928) TCGA-95-A4VK-01 15 81428949 81428949 G T C15orf26 Silent p.V84V 0.27 TCGA-95-A4VK-01 15 90258279 90258279 C A WDR93 Missense_Mutation p.P237T 0.16 tolerated(0.11) probably_damaging(0.928) TCGA-95-A4VK-01 15 91803553 91803553 G T SV2B Missense_Mutation p.G308C 0.25 deleterious(0) probably_damaging(0.998) TCGA-95-A4VK-01 16 19194972 19194972 G C SYT17 Missense_Mutation p.D152H 0.13 deleterious(0.01) benign(0.436) TCGA-95-A4VK-01 16 21712280 21712280 G T OTOA Silent p.L304L 0.41 TCGA-95-A4VK-01 16 2880254 2880254 G T ZG16B Silent p.G2G 0.56 TCGA-95-A4VK-01 16 3274353 3274353 T A ZNF200 Missense_Mutation p.T243S 0.18 tolerated(0.61) benign(0.007) TCGA-95-A4VK-01 16 61687787 61687787 T A CDH8 Missense_Mutation p.R709W 0.26 deleterious(0) probably_damaging(0.997) TCGA-95-A4VK-01 16 67686212 67686212 C A RLTPR Missense_Mutation p.F929L 0.18 tolerated(0.36) probably_damaging(0.965) TCGA-95-A4VK-01 16 69726616 69726616 A G NFAT5 Missense_Mutation p.N963S 0.22 benign(0.001) TCGA-95-A4VK-01 16 70531901 70531901 T C COG4 Missense_Mutation p.Q418R 0.27 deleterious(0.01) probably_damaging(0.955) TCGA-95-A4VK-01 16 73126769 73126769 A T HCCAT5 RNA 0.30 TCGA-95-A4VK-01 16 75263547 75263547 G A BCAR1 Silent p.G871G 0.17 TCGA-95-A4VK-01 16 88779313 88779313 G C CTU2 Missense_Mutation p.R246P 0.21 deleterious(0) probably_damaging(0.998) TCGA-95-A4VK-01 17 10399616 10399616 G T MYH1 Missense_Mutation p.A1636D 0.33 deleterious(0) possibly_damaging(0.864) TCGA-95-A4VK-01 17 10538842 10538842 G C MYH3 Silent p.R1338R 0.35 TCGA-95-A4VK-01 17 16055313 16055313 C T NCOR1 Splice_Site p.X264_splice 0.39 TCGA-95-A4VK-01 17 26694405 26694405 A C VTN Silent p.A474A 0.26 TCGA-95-A4VK-01 17 27071117 27071117 G T TRAF4 5'UTR 0.25 TCGA-95-A4VK-01 17 27207763 27207763 C A FLOT2 Missense_Mutation p.V406L 0.24 tolerated(0.09) benign(0.02) TCGA-95-A4VK-01 17 27412634 27412634 C A MYO18A Missense_Mutation p.R1962I 0.33 deleterious(0) possibly_damaging(0.558) TCGA-95-A4VK-01 17 3649189 3649189 C A ITGAE Missense_Mutation p.D730Y 0.20 deleterious(0) probably_damaging(0.983) TCGA-95-A4VK-01 17 43893883 43893883 C A CRHR1 Missense_Mutation p.P59H 0.31 deleterious(0.01) possibly_damaging(0.806) TCGA-95-A4VK-01 17 43922667 43922667 C G SPPL2C Missense_Mutation p.T132S 0.21 tolerated(0.3) benign(0.038) TCGA-95-A4VK-01 17 48270407 48270407 C A COL1A1 Missense_Mutation p.G590V 0.20 unknown(0) TCGA-95-A4VK-01 17 48608775 48608775 C T MYCBPAP Missense_Mutation p.R981C 0.10 deleterious_low_confidence(0.05) benign(0.023) TCGA-95-A4VK-01 17 60032812 60032812 C G MED13 Missense_Mutation p.A1967P 0.15 deleterious(0) probably_damaging(0.997) TCGA-95-A4VK-01 17 62130213 62130213 C A ERN1 Missense_Mutation p.R727L 0.08 tolerated(1) benign(0.07) TCGA-95-A4VK-01 17 7487089 7487089 G A MPDU1 5'UTR 0.28 TCGA-95-A4VK-01 17 78032663 78032663 T A CCDC40 Missense_Mutation p.Y442N 0.23 tolerated(0.05) possibly_damaging(0.56) TCGA-95-A4VK-01 17 80046325 80046325 G A FASN Missense_Mutation p.P845L 0.25 deleterious(0.03) probably_damaging(0.971) TCGA-95-A4VK-01 17 8136235 8136235 G C CTC1 Missense_Mutation p.P645R 0.32 deleterious(0.01) possibly_damaging(0.737) TCGA-95-A4VK-01 18 14752650 14752650 G T ANKRD30B Missense_Mutation p.D103Y 0.19 deleterious(0) probably_damaging(1) TCGA-95-A4VK-01 18 31323013 31323013 G A ASXL3 Silent p.Q1067Q 0.08 TCGA-95-A4VK-01 18 33935571 33935571 C A FHOD3 Missense_Mutation p.Q79K 0.22 deleterious(0) possibly_damaging(0.801) TCGA-95-A4VK-01 18 3880075 3880075 C A DLGAP1 5'UTR 0.28 TCGA-95-A4VK-01 18 56052803 56052803 G T NEDD4L Missense_Mutation p.M824I 0.22 deleterious(0) benign(0.427) TCGA-95-A4VK-01 18 67992718 67992718 G T SOCS6 Missense_Mutation p.D272Y 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.779) TCGA-95-A4VK-01 18 72345996 72345996 C T ZNF407 Silent p.S1007S 0.30 TCGA-95-A4VK-01 19 31039668 31039668 G T ZNF536 Missense_Mutation p.A1048S 0.35 tolerated(0.39) benign(0.002) TCGA-95-A4VK-01 19 35801012 35801012 C A MAG Silent p.T489T 0.17 TCGA-95-A4VK-01 19 38610061 38610061 G T SIPA1L3 Missense_Mutation p.A803S 0.45 deleterious(0) probably_damaging(0.999) TCGA-95-A4VK-01 19 40579843 40579843 G A ZNF780A 3'UTR 0.78 TCGA-95-A4VK-01 19 46116844 46116844 G C EML2 Missense_Mutation p.D794E 0.23 deleterious(0) probably_damaging(0.918) TCGA-95-A4VK-01 19 49167399 49167399 C T NTN5 Splice_Site p.X324_splice 0.21 TCGA-95-A4VK-01 19 51471411 51471411 C A KLK6 Intron 0.41 TCGA-95-A4VK-01 19 55179238 55179238 C T LILRB4 Silent p.D398D 0.26 TCGA-95-A4VK-01 19 9063559 9063559 G A MUC16 Missense_Mutation p.P7963S 0.38 unknown(0) TCGA-95-A4VK-01 19 9065265 9065265 G T MUC16 Missense_Mutation p.S7394Y 0.42 unknown(0) TCGA-95-A4VK-01 19 9072573 9072573 G T MUC16 Missense_Mutation p.T4958N 0.32 unknown(0) TCGA-95-A4VK-01 1 104116960 104116960 G - AMY2B Frame_Shift_Del p.A275Qfs*18 0.22 TCGA-95-A4VK-01 1 113241077 113241077 G C MOV10 Missense_Mutation p.V829L 0.24 deleterious(0.03) possibly_damaging(0.607) TCGA-95-A4VK-01 1 118539047 118539047 C T SPAG17 Missense_Mutation p.A1667T 0.18 deleterious(0) probably_damaging(0.994) TCGA-95-A4VK-01 1 144828562 144828562 A T NBPF9 Missense_Mutation p.E610D 0.17 tolerated(0.18) probably_damaging(0.99) TCGA-95-A4VK-01 1 149919237 149919237 C A OTUD7B Splice_Site p.X413_splice 0.49 TCGA-95-A4VK-01 1 152275893 152275893 G A FLG Silent p.S3823S 0.19 TCGA-95-A4VK-01 1 156884691 156884691 G T PEAR1 3'UTR 0.21 TCGA-95-A4VK-01 1 158227500 158227500 C T CD1A 3'UTR 0.05 TCGA-95-A4VK-01 1 159162411 159162411 C T CADM3 Silent p.H125H 0.19 TCGA-95-A4VK-01 1 18023766 18023766 G T ARHGEF10L Missense_Mutation p.G1244V 0.34 deleterious(0) probably_damaging(1) TCGA-95-A4VK-01 1 190067807 190067807 G A BRINP3 Missense_Mutation p.H548Y 0.22 deleterious(0) probably_damaging(0.986) TCGA-95-A4VK-01 1 190067808 190067808 G T BRINP3 Silent p.V547V 0.22 TCGA-95-A4VK-01 1 196887660 196887660 A G CFHR4 3'UTR 0.20 TCGA-95-A4VK-01 1 198492575 198492575 G A ATP6V1G3 Silent p.S101S 0.15 TCGA-95-A4VK-01 1 201195251 201195251 G T IGFN1 Missense_Mutation p.D3596Y 0.27 probably_damaging(0.993) TCGA-95-A4VK-01 1 228464987 228464987 C T OBSCN Nonsense_Mutation p.Q2618* 0.14 TCGA-95-A4VK-01 1 228476575 228476575 C A OBSCN Missense_Mutation p.T3871N 0.22 possibly_damaging(0.87) TCGA-95-A4VK-01 1 233464509 233464509 G C MLK4 Silent p.A245A 0.33 TCGA-95-A4VK-01 1 234458973 234458973 C T SLC35F3 Missense_Mutation p.P486L 0.17 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-95-A4VK-01 1 238048738 238048738 G T ZP4 Silent p.P371P 0.25 TCGA-95-A4VK-01 1 247902098 247902098 T G OR14K1 Missense_Mutation p.L61R 0.17 deleterious(0.01) possibly_damaging(0.907) TCGA-95-A4VK-01 1 248308874 248308874 G T OR2M5 Missense_Mutation p.G142V 0.20 tolerated(0.29) benign(0.049) TCGA-95-A4VK-01 1 249211673 249211673 G C PGBD2 Missense_Mutation p.W297S 0.43 deleterious(0) probably_damaging(0.999) TCGA-95-A4VK-01 1 34076810 34076810 G C CSMD2 Missense_Mutation p.N2018K 0.22 tolerated(0.09) probably_damaging(0.968) TCGA-95-A4VK-01 1 34208987 34208987 T A CSMD2 Silent p.S649S 0.26 TCGA-95-A4VK-01 1 36926905 36926905 T C MRPS15 Missense_Mutation p.D87G 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-95-A4VK-01 1 36926906 36926906 C A MRPS15 Missense_Mutation p.D87Y 0.21 deleterious(0) probably_damaging(1) TCGA-95-A4VK-01 1 65855118 65855118 C T DNAJC6 Missense_Mutation p.T458M 0.28 tolerated(0.1) probably_damaging(0.942) TCGA-95-A4VK-01 1 74507362 74507362 C G LRRIQ3 Missense_Mutation p.R418P 0.22 tolerated(0.17) benign(0.061) TCGA-95-A4VK-01 1 881035 881035 T A NOC2L Splice_Site p.X640_splice 0.18 TCGA-95-A4VK-01 1 89449152 89449152 T G RBMXL1 Silent p.R120R 0.26 TCGA-95-A4VK-01 1 92459779 92459779 A C BRDT Missense_Mutation p.N752T 0.21 tolerated(0.12) benign(0.164) TCGA-95-A4VK-01 20 23433335 23433335 C A CST11 Missense_Mutation p.M38I 0.22 tolerated(0.16) benign(0) TCGA-95-A4VK-01 20 23433336 23433336 A T CST11 Missense_Mutation p.M38K 0.22 tolerated(0.22) benign(0) TCGA-95-A4VK-01 20 2375118 2375118 G T TGM6 Missense_Mutation p.D10Y 0.19 deleterious(0) probably_damaging(0.992) TCGA-95-A4VK-01 20 40085957 40085957 C A CHD6 Missense_Mutation p.G926W 0.38 deleterious(0) probably_damaging(1) TCGA-95-A4VK-01 20 44841660 44841660 G T CDH22 Missense_Mutation p.Q336K 0.12 deleterious(0.05) probably_damaging(0.987) TCGA-95-A4VK-01 20 45811992 45811992 T A EYA2 Missense_Mutation p.Y497N 0.30 deleterious(0.02) probably_damaging(1) TCGA-95-A4VK-01 20 47587708 47587708 G A ARFGEF2 Silent p.V414V 0.23 TCGA-95-A4VK-01 20 4850594 4850594 C A SLC23A2 Missense_Mutation p.R403L 0.19 deleterious(0) probably_damaging(0.997) TCGA-95-A4VK-01 20 50406961 50406961 G A SALL4 Silent p.V687V 0.19 TCGA-95-A4VK-01 20 57246221 57246221 G A STX16 Silent p.E220E 0.17 TCGA-95-A4VK-01 20 57392727 57392727 G A MIR296 RNA 0.32 TCGA-95-A4VK-01 20 57828182 57828182 C T ZNF831 Nonsense_Mutation p.R1393* 0.21 TCGA-95-A4VK-01 20 60348093 60348093 C A CDH4 Missense_Mutation p.P144H 0.19 tolerated(0.18) benign(0.195) TCGA-95-A4VK-01 20 825986 825986 G A FAM110A Missense_Mutation p.R180Q 0.31 deleterious(0.01) benign(0.252) TCGA-95-A4VK-01 21 15872969 15872969 T A SAMSN1 Missense_Mutation p.I285F 0.29 deleterious(0) probably_damaging(0.945) TCGA-95-A4VK-01 21 19666612 19666612 C A TMPRSS15 Missense_Mutation p.V821L 0.26 tolerated(0.28) benign(0.35) TCGA-95-A4VK-01 21 31654961 31654961 G T KRTAP24-1 Missense_Mutation p.S97Y 0.19 deleterious(0.05) benign(0.384) TCGA-95-A4VK-01 21 31812962 31812962 G T KRTAP15-1 Missense_Mutation p.G106V 0.21 deleterious(0) probably_damaging(0.994) TCGA-95-A4VK-01 21 33974486 33974486 T A C21orf59 Intron 0.39 TCGA-95-A4VK-01 21 46011390 46011390 A T KRTAP10-6 Missense_Mutation p.S326T 0.33 tolerated(0.1) possibly_damaging(0.867) TCGA-95-A4VK-01 21 47570081 47570081 G A FTCD Silent p.C286C 0.32 TCGA-95-A4VK-01 22 19052395 19052395 G A DGCR2 Missense_Mutation p.P172S 0.23 tolerated(0.28) benign(0.271) TCGA-95-A4VK-01 22 19766908 19766908 C G GNB1L 3'Flank 0.28 TCGA-95-A4VK-01 22 31835994 31835994 G A EIF4ENIF1 Missense_Mutation p.R944C 0.09 deleterious_low_confidence(0.04) benign(0.01) TCGA-95-A4VK-01 22 33670448 33670448 C G LARGE Missense_Mutation p.A746P 0.19 deleterious(0) probably_damaging(0.999) TCGA-95-A4VK-01 22 44965251 44965251 G T LINC00207 RNA 0.29 TCGA-95-A4VK-01 22 50716156 50716156 C A PLXNB2 Missense_Mutation p.R1687L 0.21 deleterious(0) probably_damaging(1) TCGA-95-A4VK-01 2 109381702 109381702 G T RANBP2 Silent p.P1569P 0.24 TCGA-95-A4VK-01 2 109455669 109455669 A C CCDC138 Missense_Mutation p.Q412P 0.30 deleterious(0) benign(0.293) TCGA-95-A4VK-01 2 113513880 113513880 C A CKAP2L Missense_Mutation p.K356N 0.31 deleterious(0) probably_damaging(0.978) TCGA-95-A4VK-01 2 121728133 121728133 C T GLI2 Missense_Mutation p.T337M 0.29 tolerated(0.09) benign(0.02) TCGA-95-A4VK-01 2 127826500 127826500 C A BIN1 Missense_Mutation p.K173N 0.17 deleterious(0) possibly_damaging(0.906) TCGA-95-A4VK-01 2 130832880 130832880 G T POTEF Missense_Mutation p.A722E 0.22 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-95-A4VK-01 2 136570356 136570356 G T LCT Missense_Mutation p.F626L 0.21 deleterious(0) probably_damaging(0.967) TCGA-95-A4VK-01 2 142012133 142012133 C T LRP1B Missense_Mutation p.E141K 0.20 benign(0.003) TCGA-95-A4VK-01 2 142012134 142012134 A C LRP1B Missense_Mutation p.C140W 0.20 possibly_damaging(0.675) TCGA-95-A4VK-01 2 155555740 155555740 C A KCNJ3 Silent p.I151I 0.17 TCGA-95-A4VK-01 2 168100699 168100699 C G XIRP2 Missense_Mutation p.R933G 0.25 possibly_damaging(0.908) TCGA-95-A4VK-01 2 168103859 168103859 C G XIRP2 Missense_Mutation p.P1986R 0.28 possibly_damaging(0.767) TCGA-95-A4VK-01 2 168105672 168105672 A G XIRP2 Silent p.Q2590Q 0.24 TCGA-95-A4VK-01 2 170011008 170011008 G T LRP2 Missense_Mutation p.A4086D 0.21 probably_damaging(0.912) TCGA-95-A4VK-01 2 175962188 175962188 G A ATF2 Missense_Mutation p.S321F 0.07 tolerated(0.08) possibly_damaging(0.687) TCGA-95-A4VK-01 2 17998038 17998038 G A MSGN1 Missense_Mutation p.G85S 0.15 tolerated(0.57) benign(0.011) TCGA-95-A4VK-01 2 182359478 182359478 G T ITGA4 Silent p.S426S 0.16 TCGA-95-A4VK-01 2 183050667 183050667 C - PDE1A Frame_Shift_Del p.D506Tfs*13 0.18 TCGA-95-A4VK-01 2 189874947 189874947 T A COL3A1 Silent p.A1289A 0.26 TCGA-95-A4VK-01 2 191236211 191236211 C T INPP1 3'UTR 0.29 TCGA-95-A4VK-01 2 1926248 1926248 C A MYT1L Silent p.L431L 0.18 TCGA-95-A4VK-01 2 207012518 207012518 C T NDUFS1 Missense_Mutation p.D141N 0.27 deleterious(0) probably_damaging(1) TCGA-95-A4VK-01 2 216251493 216251493 G T FN1 Missense_Mutation p.P1511T 0.25 deleterious(0) probably_damaging(0.999) TCGA-95-A4VK-01 2 231050816 231050816 C A SP110 Silent p.V391V 0.22 TCGA-95-A4VK-01 2 231050818 231050818 C T SP110 Missense_Mutation p.V391M 0.22 tolerated(0.19) possibly_damaging(0.781) TCGA-95-A4VK-01 2 233899013 233899013 C T NEU2 Missense_Mutation p.T130I 0.20 tolerated(0.18) benign(0.108) TCGA-95-A4VK-01 2 234238162 234238162 C A SAG Silent p.I224I 0.21 TCGA-95-A4VK-01 2 234527015 234527015 A T UGT1A8 Missense_Mutation p.Q221L 0.26 tolerated(0.63) benign(0.004) TCGA-95-A4VK-01 2 29259465 29259465 C A FAM179A Missense_Mutation p.A826E 0.18 deleterious(0) probably_damaging(0.997) TCGA-95-A4VK-01 2 36583748 36583748 G T CRIM1 Nonsense_Mutation p.E105* 0.25 TCGA-95-A4VK-01 2 89385176 89385176 G T IGKV3-15 Missense_Mutation p.P4Q 0.31 tolerated(0.48) benign(0.3) TCGA-95-A4VK-01 2 89999512 89999512 C A IGKV2D-28 Missense_Mutation p.A105D 0.27 deleterious(0.01) possibly_damaging(0.802) TCGA-95-A4VK-01 2 96690281 96690281 G T GPAT2 Silent p.I521I 0.34 TCGA-95-A4VK-01 2 9731527 9731527 G C YWHAQ Missense_Mutation p.R138G 0.19 deleterious_low_confidence(0) benign(0.36) TCGA-95-A4VK-01 3 11402238 11402238 G T ATG7 Missense_Mutation p.D555Y 0.25 deleterious(0) probably_damaging(0.998) TCGA-95-A4VK-01 3 121351019 121351019 C A HCLS1 Missense_Mutation p.C418F 0.25 tolerated(0.7) benign(0.308) TCGA-95-A4VK-01 3 14558608 14558608 G T GRIP2 RNA 0.19 TCGA-95-A4VK-01 3 14861839 14861839 G A FGD5 Missense_Mutation p.A421T 0.31 tolerated_low_confidence(0.97) benign(0.028) TCGA-95-A4VK-01 3 52811641 52811641 G T ITIH1 Missense_Mutation p.A4S 0.32 tolerated_low_confidence(0.11) benign(0.268) TCGA-95-A4VK-01 3 52825828 52825828 G A ITIH1 Silent p.P879P 0.21 TCGA-95-A4VK-01 4 147861018 147861018 T C TTC29 Silent p.T10T 0.27 TCGA-95-A4VK-01 4 185689423 185689423 C A ACSL1 Intron 0.30 TCGA-95-A4VK-01 4 185940048 185940048 G T HELT 5'Flank 0.26 TCGA-95-A4VK-01 4 186068041 186068041 C T SLC25A4 Silent p.F271F 0.24 TCGA-95-A4VK-01 4 188924349 188924349 G T ZFP42 Nonsense_Mutation p.E130* 0.22 TCGA-95-A4VK-01 4 23826100 23826100 G A PPARGC1A Silent p.T263T 0.22 TCGA-95-A4VK-01 4 57514943 57514943 C A HOPX 3'UTR 0.28 TCGA-95-A4VK-01 4 70361450 70361450 C T UGT2B4 Missense_Mutation p.D44N 0.21 tolerated(0.09) benign(0.119) TCGA-95-A4VK-01 4 7044705 7044705 C A CCDC96 5'UTR 0.17 TCGA-95-A4VK-01 4 76797607 76797607 C T PPEF2 Missense_Mutation p.E385K 0.21 tolerated(0.26) benign(0.446) TCGA-95-A4VK-01 4 82125882 82125882 C A PRKG2 Missense_Mutation p.R107L 0.24 tolerated(0.28) benign(0.061) TCGA-95-A4VK-01 4 88534106 88534106 C T DSPP Silent p.D256D 0.27 TCGA-95-A4VK-01 5 110843118 110843118 G A STARD4 Missense_Mutation p.S5F 0.37 deleterious(0) benign(0.044) TCGA-95-A4VK-01 5 11159803 11159803 G T CTNND2 Missense_Mutation p.L682M 0.27 deleterious(0.01) probably_damaging(0.958) TCGA-95-A4VK-01 5 128301820 128301820 C A SLC27A6 5'UTR 0.35 TCGA-95-A4VK-01 5 140432109 140432109 G - PCDHB1 Frame_Shift_Del p.V352Cfs*14 0.17 TCGA-95-A4VK-01 5 140517005 140517005 C A PCDHB5 Missense_Mutation p.D663E 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.608) TCGA-95-A4VK-01 5 140595675 140595675 G T PCDHB13 Silent p.V660V 0.24 TCGA-95-A4VK-01 5 140741247 140741247 C A PCDHGB2 Missense_Mutation p.F515L 0.27 deleterious(0.02) possibly_damaging(0.718) TCGA-95-A4VK-01 5 140763118 140763118 G A PCDHGA7 Missense_Mutation p.G218S 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-95-A4VK-01 5 140772414 140772414 G T PCDHGA8 Nonsense_Mutation p.E12* 0.19 TCGA-95-A4VK-01 5 140784429 140784429 C T PCDHGA9 Missense_Mutation p.A637V 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.511) TCGA-95-A4VK-01 5 156456733 156456733 A G HAVCR1 3'UTR 0.22 TCGA-95-A4VK-01 5 161300291 161300291 C A GABRA1 Missense_Mutation p.P142T 0.31 deleterious(0) possibly_damaging(0.473) TCGA-95-A4VK-01 5 172659775 172659775 C G NKX2-5 Missense_Mutation p.G258R 0.19 tolerated(0.06) benign(0.094) TCGA-95-A4VK-01 5 178140243 178140243 T A ZNF354A Missense_Mutation p.K212N 0.27 deleterious(0) possibly_damaging(0.887) TCGA-95-A4VK-01 5 180486720 180486720 G T BTNL9 Missense_Mutation p.R489M 0.54 tolerated(0.06) probably_damaging(0.988) TCGA-95-A4VK-01 5 23522916 23522916 G C PRDM9 Silent p.P268P 0.23 TCGA-95-A4VK-01 5 72469211 72469211 G T TMEM174 Silent p.L47L 0.26 TCGA-95-A4VK-01 5 82817667 82817667 G T VCAN Missense_Mutation p.G1181V 0.25 deleterious(0) probably_damaging(0.971) TCGA-95-A4VK-01 5 82836899 82836899 C G VCAN Missense_Mutation p.L2693V 0.18 tolerated(0.05) probably_damaging(0.925) TCGA-95-A4VK-01 5 83433159 83433159 G C EDIL3 Missense_Mutation p.C123W 0.20 deleterious(0) probably_damaging(0.99) TCGA-95-A4VK-01 5 89815177 89815177 C A LYSMD3 Missense_Mutation p.R127I 0.26 tolerated(0.05) possibly_damaging(0.878) TCGA-95-A4VK-01 5 95234345 95234345 G T ELL2 Missense_Mutation p.P375H 0.19 tolerated(0.07) benign(0.376) TCGA-95-A4VK-01 5 98204325 98204325 C A CHD1 Missense_Mutation p.K1374N 0.24 deleterious(0.04) benign(0.004) TCGA-95-A4VK-01 6 100403881 100403881 C A MCHR2 Missense_Mutation p.G48V 0.22 deleterious(0) probably_damaging(1) TCGA-95-A4VK-01 6 10697641 10697641 A C PAK1IP1 Missense_Mutation p.T57P 0.19 deleterious(0) probably_damaging(0.988) TCGA-95-A4VK-01 6 125284172 125284172 A T RP11-510H23.1 RNA 0.25 TCGA-95-A4VK-01 6 135239870 135239870 C T ALDH8A1 Missense_Mutation p.D383N 0.28 tolerated(0.18) possibly_damaging(0.461) TCGA-95-A4VK-01 6 135318590 135318593 CTTC TTT HBS1L Frame_Shift_Del p.A249Rfs*15 0.22 TCGA-95-A4VK-01 6 136596998 136596998 A T BCLAF1 Silent p.P555P 0.06 TCGA-95-A4VK-01 6 25924083 25924083 G C SLC17A2 Nonsense_Mutation p.S27* 0.07 TCGA-95-A4VK-01 6 2896338 2896338 C A SERPINB9 Silent p.L85L 0.19 TCGA-95-A4VK-01 6 31540517 31540517 C G LTA 5'UTR 0.19 TCGA-95-A4VK-01 6 5002460 5002460 T A RPP40 Missense_Mutation p.E48V 0.39 deleterious(0) possibly_damaging(0.758) TCGA-95-A4VK-01 6 52053913 52053913 G T IL17A Missense_Mutation p.L97F 0.31 tolerated(0.7) benign(0.158) TCGA-95-A4VK-01 7 100253146 100253146 C T ACTL6B Missense_Mutation p.G56R 0.26 tolerated(0.14) possibly_damaging(0.616) TCGA-95-A4VK-01 7 100364703 100364703 G T ZAN Missense_Mutation p.M1561I 0.24 unknown(0) TCGA-95-A4VK-01 7 114303530 114303530 C T FOXP2 Missense_Mutation p.P624S 0.20 tolerated(0.7) benign(0.001) TCGA-95-A4VK-01 7 127255598 127255598 C A PAX4 5'UTR 0.21 TCGA-95-A4VK-01 7 129096290 129096290 G T STRIP2 Missense_Mutation p.G282V 0.25 deleterious(0) probably_damaging(0.998) TCGA-95-A4VK-01 7 139030421 139030421 C T C7orf55 Nonsense_Mutation p.Q105* 0.26 TCGA-95-A4VK-01 7 141349062 141349062 G T AGK Splice_Site p.X326_splice 0.21 TCGA-95-A4VK-01 7 142499005 142499005 C A TRBC2 Missense_Mutation p.F94L 0.09 deleterious(0) probably_damaging(0.998) TCGA-95-A4VK-01 7 146829572 146829572 C A CNTNAP2 Missense_Mutation p.T440N 0.21 tolerated(0.37) benign(0) TCGA-95-A4VK-01 7 149523302 149523302 G T SSPO RNA 0.20 TCGA-95-A4VK-01 7 157926403 157926403 C A PTPRN2 Nonsense_Mutation p.E508* 0.22 TCGA-95-A4VK-01 7 20403296 20403296 G T ITGB8 Missense_Mutation p.C55F 0.37 deleterious(0) probably_damaging(0.999) TCGA-95-A4VK-01 7 20782623 20782623 G C ABCB5 Missense_Mutation p.G1050R 0.21 deleterious(0) possibly_damaging(0.903) TCGA-95-A4VK-01 7 2638184 2638184 G T IQCE Missense_Mutation p.R509L 0.28 tolerated(0.43) benign(0.006) TCGA-95-A4VK-01 7 27149788 27149788 A G HOXA3 Missense_Mutation p.W158R 0.28 deleterious(0) possibly_damaging(0.608) TCGA-95-A4VK-01 7 30491319 30491319 C A NOD1 Missense_Mutation p.G572C 0.24 deleterious(0.03) benign(0.315) TCGA-95-A4VK-01 7 5340114 5340114 G A SLC29A4 Missense_Mutation p.R424H 0.29 deleterious(0) probably_damaging(1) TCGA-95-A4VK-01 7 95614126 95614126 G T DYNC1I1 Splice_Site p.X211_splice 0.30 TCGA-95-A4VK-01 7 99700561 99700561 A T AP4M1 Missense_Mutation p.Y110F 0.29 deleterious(0) probably_damaging(0.972) TCGA-95-A4VK-01 8 113314023 113314023 T C CSMD3 Silent p.L2813L 0.24 TCGA-95-A4VK-01 8 55060069 55060069 C G MRPL15 Silent p.A227A 0.19 TCGA-95-A4VK-01 9 101540538 101540538 G A ANKS6 Missense_Mutation p.P513S 0.18 tolerated(0.43) benign(0.002) TCGA-95-A4VK-01 9 107566948 107566948 C A ABCA1 Silent p.S1506S 0.20 TCGA-95-A4VK-01 9 114695260 114695260 G A UGCG Missense_Mutation p.E390K 0.29 tolerated(0.08) benign(0.222) TCGA-95-A4VK-01 9 119903668 119903668 G A ASTN2 Intron 0.29 TCGA-95-A4VK-01 9 127738467 127738467 T G SCAI Splice_Site p.X466_splice 0.28 TCGA-95-A4VK-01 9 130579604 130579604 C T ENG Intron 0.25 TCGA-95-A4VK-01 9 132400638 132400638 G - ASB6 Frame_Shift_Del p.Q233Rfs*2 0.16 TCGA-95-A4VK-01 9 15192621 15192621 C A TTC39B Silent p.G299G 0.16 TCGA-95-A4VK-01 9 18928029 18928029 C A FAM154A 3'UTR 0.32 TCGA-95-A4VK-01 9 79325838 79325838 G T PRUNE2 Missense_Mutation p.P451H 0.23 deleterious(0) probably_damaging(1) TCGA-95-A4VK-01 9 82333781 82333781 C T TLE4 Silent p.I495I 0.05 TCGA-95-A4VK-01 X 101817565 101817565 G T NXF4 RNA 0.29 TCGA-95-A4VK-01 X 107834356 107834356 G T COL4A5 Nonsense_Mutation p.G412* 0.30 TCGA-95-A4VK-01 X 123556352 123556352 T C TENM1 Missense_Mutation p.Q1414R 0.44 tolerated(0.08) possibly_damaging(0.833) TCGA-95-A4VK-01 X 127185246 127185246 G T ACTRT1 Missense_Mutation p.L314I 0.39 tolerated(0.18) possibly_damaging(0.874) TCGA-95-A4VK-01 X 138870481 138870481 G A ATP11C Missense_Mutation p.R467C 0.41 deleterious(0.02) probably_damaging(0.988) TCGA-95-A4VK-01 X 1428322 1428322 G T CSF2RA Nonsense_Mutation p.E419* 0.23 TCGA-95-A4VK-01 X 18646679 18646679 G A CDKL5 Silent p.P895P 0.06 TCGA-95-A4VK-01 X 34150282 34150282 C A FAM47A Silent p.L38L 0.39 TCGA-95-A4VK-01 X 37850307 37850307 C A CXorf27 Missense_Mutation p.A72D 0.35 deleterious(0.01) benign(0.4) TCGA-95-A4VK-01 X 37850308 37850308 C G CXorf27 Silent p.A72A 0.35 TCGA-95-A4VK-01 X 50127767 50127767 G T DGKK RNA 0.34 TCGA-95-A4VK-01 X 53440276 53440276 T G SMC1A Missense_Mutation p.E174A 0.21 tolerated(0.1) possibly_damaging(0.479) TCGA-95-A4VK-01 X 83129603 83129603 G T CYLC1 Missense_Mutation p.M629I 0.40 tolerated(0.1) benign(0.06) TCGA-95-A4VN-01 10 101961868 101961868 C G CHUK Missense_Mutation p.E516Q 0.09 tolerated(1) benign(0.111) TCGA-95-A4VN-01 10 105819895 105819895 G T COL17A1 Missense_Mutation p.P375T 0.24 unknown(0) TCGA-95-A4VN-01 10 127503661 127503661 G A UROS Silent p.T62T 0.15 TCGA-95-A4VN-01 10 131557572 131557572 G T MGMT Silent p.A158A 0.29 TCGA-95-A4VN-01 10 133950541 133950541 A T JAKMIP3 Missense_Mutation p.I379L 0.39 tolerated(1) benign(0.001) TCGA-95-A4VN-01 10 134010561 134010561 G T DPYSL4 Missense_Mutation p.A193S 0.25 deleterious(0) probably_damaging(0.999) TCGA-95-A4VN-01 10 134886387 134886387 G T GPR123 Missense_Mutation p.D141Y 0.24 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-95-A4VN-01 10 17130209 17130209 G A CUBN Missense_Mutation p.T634I 0.28 deleterious(0.04) probably_damaging(0.98) TCGA-95-A4VN-01 10 21806646 21806646 G C SKIDA1 Missense_Mutation p.L36V 0.39 deleterious(0) probably_damaging(0.998) TCGA-95-A4VN-01 10 25160969 25160969 C A PRTFDC1 Missense_Mutation p.M121I 0.32 tolerated(1) benign(0.058) TCGA-95-A4VN-01 10 26506849 26506849 C A GAD2 Missense_Mutation p.A72D 0.34 tolerated_low_confidence(0.44) benign(0.017) TCGA-95-A4VN-01 10 26506850 26506850 C A GAD2 Silent p.A72A 0.35 TCGA-95-A4VN-01 10 27009245 27009245 G A PDSS1 Missense_Mutation p.R189Q 0.05 deleterious(0) probably_damaging(0.995) TCGA-95-A4VN-01 10 27536581 27536581 C A RP11-85G18.6 Intron 0.22 TCGA-95-A4VN-01 10 27703027 27703027 C T PTCHD3 Silent p.P51P 0.07 TCGA-95-A4VN-01 10 32856642 32856642 A T CCDC7 Missense_Mutation p.Q414H 0.19 tolerated(0.09) probably_damaging(0.971) TCGA-95-A4VN-01 10 33214840 33214840 C T ITGB1 Missense_Mutation p.E249K 0.06 deleterious(0) probably_damaging(0.99) TCGA-95-A4VN-01 10 33221494 33221494 T A ITGB1 Silent p.S34S 0.09 TCGA-95-A4VN-01 10 403772 403772 C A DIP2C Missense_Mutation p.R967L 0.20 deleterious(0.04) benign(0) TCGA-95-A4VN-01 10 42928803 42928803 C G CCNYL2 Splice_Site 0.14 TCGA-95-A4VN-01 10 44873953 44873953 C A CXCL12 Intron 0.35 TCGA-95-A4VN-01 10 50955097 50955097 C A OGDHL Missense_Mutation p.R382L 0.07 tolerated(0.15) benign(0.059) TCGA-95-A4VN-01 10 54528052 54528052 G T MBL2 Missense_Mutation p.L198M 0.16 tolerated(0.22) benign(0.188) TCGA-95-A4VN-01 10 54529059 54529059 C A MBL2 Silent p.L107L 0.15 TCGA-95-A4VN-01 10 55912914 55912914 C A PCDH15 Missense_Mutation p.R577L 0.25 deleterious(0.01) benign(0.187) TCGA-95-A4VN-01 10 58118466 58118466 G A ZWINT Missense_Mutation p.L215F 0.08 deleterious(0.01) probably_damaging(0.934) TCGA-95-A4VN-01 10 64136086 64136086 C T ZNF365 Missense_Mutation p.A45V 0.15 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-95-A4VN-01 10 82269138 82269138 G T TSPAN14 Missense_Mutation p.D121Y 0.22 deleterious(0) probably_damaging(0.914) TCGA-95-A4VN-01 10 84745032 84745032 C A NRG3 Missense_Mutation p.Q588K 0.27 deleterious(0.02) possibly_damaging(0.447) TCGA-95-A4VN-01 10 85973974 85973974 G A CDHR1 Missense_Mutation p.R726H 0.29 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-95-A4VN-01 10 90354471 90354471 C T LIPJ Missense_Mutation p.T126I 0.30 tolerated(1) benign(0) TCGA-95-A4VN-01 10 96028740 96028740 G - PLCE1 Frame_Shift_Del p.M1447Cfs*10 0.17 TCGA-95-A4VN-01 11 1011325 1011325 G T AP2A2 3'UTR 0.28 TCGA-95-A4VN-01 11 102980366 102980366 C G DYNC2H1 Missense_Mutation p.F21L 0.15 benign(0.007) TCGA-95-A4VN-01 11 105924887 105924887 C A KBTBD3 Missense_Mutation p.V177L 0.19 tolerated(1) benign(0.047) TCGA-95-A4VN-01 11 107677513 107677513 C A SLC35F2 Silent p.V168V 0.18 TCGA-95-A4VN-01 11 10785223 10785223 C G CTR9 Missense_Mutation p.Q331E 0.17 deleterious(0.01) probably_damaging(0.959) TCGA-95-A4VN-01 11 118392124 118392124 G A KMT2A Missense_Mutation p.D3879N 0.09 possibly_damaging(0.645) TCGA-95-A4VN-01 11 118899022 118899022 C A SLC37A4 Missense_Mutation p.G88V 0.21 deleterious(0) probably_damaging(0.998) TCGA-95-A4VN-01 11 18330504 18330504 A T HPS5 Nonsense_Mutation p.C200* 0.19 TCGA-95-A4VN-01 11 1858270 1858270 C A SYT8 Missense_Mutation p.P306T 0.08 deleterious(0) probably_damaging(1) TCGA-95-A4VN-01 11 1858271 1858271 C A SYT8 Missense_Mutation p.P306H 0.07 deleterious(0) probably_damaging(1) TCGA-95-A4VN-01 11 224188 224188 C A SIRT3 Missense_Mutation p.V287L 0.19 deleterious(0.01) benign(0.373) TCGA-95-A4VN-01 11 2441552 2441552 G A TRPM5 Silent p.F183F 0.05 TCGA-95-A4VN-01 11 30433026 30433026 G A MPPED2 Nonsense_Mutation p.Q292* 0.07 TCGA-95-A4VN-01 11 30433133 30433133 C A MPPED2 Missense_Mutation p.G256V 0.11 deleterious(0) benign(0.422) TCGA-95-A4VN-01 11 32421568 32421568 C A WT1 Missense_Mutation p.D342Y 0.10 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-95-A4VN-01 11 32956763 32956763 C T QSER1 Missense_Mutation p.P1191L 0.06 tolerated(0.14) benign(0.044) TCGA-95-A4VN-01 11 35828002 35828002 G T TRIM44 3'UTR 0.08 TCGA-95-A4VN-01 11 40136657 40136657 G T LRRC4C Missense_Mutation p.H396N 0.12 deleterious(0) probably_damaging(0.994) TCGA-95-A4VN-01 11 47446155 47446155 C A PSMC3 Intron 0.17 TCGA-95-A4VN-01 11 4944871 4944871 G T OR51G1 Missense_Mutation p.H233Q 0.16 tolerated(0.34) benign(0.007) TCGA-95-A4VN-01 11 5462724 5462724 G A OR51I1 Silent p.T7T 0.05 TCGA-95-A4VN-01 11 55036733 55036733 G T TRIM48 Silent p.L198L 0.12 TCGA-95-A4VN-01 11 55406172 55406172 C T OR4P4 Silent p.L113L 0.10 TCGA-95-A4VN-01 11 55579442 55579442 C A OR5L1 Missense_Mutation p.P167H 0.06 tolerated(0.05) possibly_damaging(0.776) TCGA-95-A4VN-01 11 55587148 55587148 C A OR5D18 Missense_Mutation p.L15I 0.11 deleterious(0) possibly_damaging(0.608) TCGA-95-A4VN-01 11 5602650 5602651 - T OR52B6 Frame_Shift_Ins p.E183* 0.09 TCGA-95-A4VN-01 11 59210942 59210942 G A OR5A1 Missense_Mutation p.A101T 0.10 tolerated(0.22) benign(0.303) TCGA-95-A4VN-01 11 59481066 59481066 G T OR10V1 Missense_Mutation p.L85I 0.10 tolerated(0.86) benign(0.027) TCGA-95-A4VN-01 11 639514 639514 A G DRD4 Missense_Mutation p.I123V 0.09 deleterious(0) unknown(0) TCGA-95-A4VN-01 11 64434816 64434816 G A NRXN2 Silent p.D568D 0.08 TCGA-95-A4VN-01 11 64436068 64436068 G T NRXN2 Silent p.I402I 0.22 TCGA-95-A4VN-01 11 64600143 64600143 G A CDC42BPG Silent p.L980L 0.14 TCGA-95-A4VN-01 11 64675246 64675246 C A ATG2A Missense_Mutation p.K827N 0.09 deleterious(0) probably_damaging(0.994) TCGA-95-A4VN-01 11 64825613 64825613 C T NAALADL1 Missense_Mutation p.A99T 0.15 tolerated(0.58) benign(0.001) TCGA-95-A4VN-01 11 65715066 65715066 A T TSGA10IP RNA 0.09 TCGA-95-A4VN-01 11 6891001 6891001 C A OR10A2 Missense_Mutation p.L6M 0.06 deleterious(0.03) possibly_damaging(0.841) TCGA-95-A4VN-01 11 71277145 71277145 G A KRTAP5-10 Missense_Mutation p.S171N 0.16 unknown(0) TCGA-95-A4VN-01 11 83585501 83585501 C A DLG2 Missense_Mutation p.Q509H 0.15 tolerated(0.23) benign(0.431) TCGA-95-A4VN-01 11 88386527 88386527 C A GRM5 Missense_Mutation p.R319L 0.15 tolerated(0.33) benign(0.133) TCGA-95-A4VN-01 12 100926265 100926265 G T NR1H4 Missense_Mutation p.A169S 0.07 deleterious(0) probably_damaging(0.968) TCGA-95-A4VN-01 12 101017384 101017384 G A GAS2L3 Nonsense_Mutation p.W267* 0.20 TCGA-95-A4VN-01 12 101477465 101477465 C T ANO4 Nonsense_Mutation p.R434* 0.07 TCGA-95-A4VN-01 12 104109602 104109602 C A STAB2 Missense_Mutation p.P1516Q 0.21 deleterious(0.01) probably_damaging(1) TCGA-95-A4VN-01 12 106824186 106824186 G - POLR3B Frame_Shift_Del p.G467Vfs*33 0.21 TCGA-95-A4VN-01 12 111749950 111749950 C A CUX2 Missense_Mutation p.D649E 0.11 tolerated(0.58) probably_damaging(0.959) TCGA-95-A4VN-01 12 112688182 112688182 C A HECTD4 Splice_Site p.X1093_splice 0.07 TCGA-95-A4VN-01 12 117769036 117769036 G T NOS1 5'Flank 0.27 TCGA-95-A4VN-01 12 131285957 131285957 C A STX2 Intron 0.20 TCGA-95-A4VN-01 12 133381391 133381391 T C GOLGA3 Missense_Mutation p.N503S 0.07 tolerated(0.3) benign(0.006) TCGA-95-A4VN-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.35 deleterious(0) possibly_damaging(0.479) TCGA-95-A4VN-01 12 26220606 26220606 G T RASSF8 Missense_Mutation p.E366D 0.43 tolerated(0.16) benign(0.002) TCGA-95-A4VN-01 12 3806019 3806019 T A EFCAB4B Silent p.L49L 0.08 TCGA-95-A4VN-01 12 46315891 46315891 C A SCAF11 Silent p.R1444R 0.19 TCGA-95-A4VN-01 12 49495911 49495911 C A LMBR1L Missense_Mutation p.V308L 0.08 tolerated(0.68) benign(0.002) TCGA-95-A4VN-01 12 54405344 54405344 C A HOXC8 3'UTR 0.19 TCGA-95-A4VN-01 12 55356745 55356745 C A TESPA1 Missense_Mutation p.D313Y 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-95-A4VN-01 12 56230864 56230864 A T MMP19 Missense_Mutation p.L495M 0.11 tolerated_low_confidence(0.06) unknown(0) TCGA-95-A4VN-01 12 57437123 57437123 C T MYO1A Silent p.E304E 0.18 TCGA-95-A4VN-01 12 58109591 58109591 G T OS9 Missense_Mutation p.V210L 0.11 tolerated(0.06) possibly_damaging(0.903) TCGA-95-A4VN-01 12 66935728 66935728 C A GRIP1 Nonsense_Mutation p.E47* 0.19 TCGA-95-A4VN-01 12 70918305 70918305 G T PTPRB Missense_Mutation p.Q2191K 0.17 deleterious(0.01) possibly_damaging(0.804) TCGA-95-A4VN-01 12 75601758 75601758 G T KCNC2 Silent p.G2G 0.14 TCGA-95-A4VN-01 12 78513132 78513132 C A NAV3 Silent p.P1052P 0.18 TCGA-95-A4VN-01 12 85518189 85518189 A T LRRIQ1 Missense_Mutation p.E1300V 0.08 deleterious(0.01) possibly_damaging(0.649) TCGA-95-A4VN-01 12 95228192 95228192 C A MIR492 RNA 0.09 TCGA-95-A4VN-01 13 103449232 103449232 A T KDELC1 Missense_Mutation p.Y104N 0.07 deleterious(0) probably_damaging(0.923) TCGA-95-A4VN-01 13 106124955 106124955 G T DAOA Missense_Mutation p.G68C 0.21 deleterious_low_confidence(0.04) probably_damaging(0.992) TCGA-95-A4VN-01 13 113826299 113826299 C A PROZ Missense_Mutation p.H383Q 0.09 deleterious(0) probably_damaging(0.989) TCGA-95-A4VN-01 13 114164726 114164726 G T TMCO3 Silent p.R404R 0.12 TCGA-95-A4VN-01 13 22069445 22069445 C A MICU2 Missense_Mutation p.R352I 0.15 deleterious(0) probably_damaging(1) TCGA-95-A4VN-01 13 26153001 26153001 G T ATP8A2 Nonsense_Mutation p.E611* 0.16 TCGA-95-A4VN-01 13 32731475 32731475 G T FRY Nonsense_Mutation p.E573* 0.14 TCGA-95-A4VN-01 13 32841377 32841377 C A FRY Missense_Mutation p.Q2673K 0.08 tolerated(0.27) probably_damaging(0.996) TCGA-95-A4VN-01 13 38229405 38229405 C T TRPC4 Silent p.L568L 0.10 TCGA-95-A4VN-01 13 38266159 38266159 C G TRPC4 Missense_Mutation p.W404S 0.10 tolerated(0.07) probably_damaging(0.958) TCGA-95-A4VN-01 13 41515130 41515130 C G ELF1 Missense_Mutation p.V395L 0.06 tolerated(0.28) benign(0.005) TCGA-95-A4VN-01 13 86369880 86369880 C T SLITRK6 Missense_Mutation p.G255E 0.06 deleterious(0) probably_damaging(0.911) TCGA-95-A4VN-01 13 93879653 93879653 C A GPC6 5'UTR 0.09 TCGA-95-A4VN-01 14 106067886 106067886 G T IGHE Silent p.L60L 0.07 TCGA-95-A4VN-01 14 20585632 20585632 C G OR4K17 Missense_Mutation p.P23A 0.12 tolerated_low_confidence(1) benign(0) TCGA-95-A4VN-01 14 21899264 21899264 G A CHD8 Missense_Mutation p.A180V 0.10 tolerated_low_confidence(0.1) benign(0.01) TCGA-95-A4VN-01 14 22509377 22509377 C A TRAV20 Silent p.A105A 0.23 TCGA-95-A4VN-01 14 22592194 22592194 C A TRAV26-1 Silent p.P93P 0.09 TCGA-95-A4VN-01 14 23889338 23889338 C G MYH7 Missense_Mutation p.E1148Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-95-A4VN-01 14 23902775 23902775 C A MYH7 Missense_Mutation p.G56V 0.08 deleterious(0) probably_damaging(0.935) TCGA-95-A4VN-01 14 24629797 24629797 C T RNF31 3'UTR 0.14 TCGA-95-A4VN-01 14 25076363 25076363 C A GZMH Missense_Mutation p.G197C 0.07 deleterious(0.04) benign(0.23) TCGA-95-A4VN-01 14 50616925 50616925 C T SOS2 Missense_Mutation p.E729K 0.11 deleterious(0.01) possibly_damaging(0.88) TCGA-95-A4VN-01 14 55169163 55169163 C T SAMD4A Missense_Mutation p.R194W 0.08 deleterious(0.04) probably_damaging(0.983) TCGA-95-A4VN-01 14 57083905 57083905 A G TMEM260 Missense_Mutation p.R316G 0.22 deleterious(0.02) benign(0) TCGA-95-A4VN-01 14 71492888 71492888 G C PCNX Missense_Mutation p.G1080R 0.07 deleterious(0.04) possibly_damaging(0.864) TCGA-95-A4VN-01 14 79175742 79175742 G T NRXN3 Missense_Mutation p.M95I 0.08 tolerated(0.09) possibly_damaging(0.593) TCGA-95-A4VN-01 14 79432749 79432749 G T NRXN3 Missense_Mutation p.G553V 0.05 deleterious(0) probably_damaging(0.999) TCGA-95-A4VN-01 14 88477962 88477962 C T GPR65 Silent p.N257N 0.07 TCGA-95-A4VN-01 14 92150220 92150220 C A CATSPERB Splice_Site p.X311_splice 0.07 TCGA-95-A4VN-01 14 92150224 92150224 C A CATSPERB Nonsense_Mutation p.E310* 0.06 TCGA-95-A4VN-01 14 94909074 94909074 G T SERPINA11 Missense_Mutation p.Q380K 0.14 tolerated(0.55) possibly_damaging(0.851) TCGA-95-A4VN-01 14 94909076 94909076 G T SERPINA11 Missense_Mutation p.S379Y 0.14 tolerated(0.12) probably_damaging(0.924) TCGA-95-A4VN-01 14 95081396 95081396 C A SERPINA3 Silent p.V206V 0.08 TCGA-95-A4VN-01 14 96134502 96134502 A C TCL6 Intron 0.11 TCGA-95-A4VN-01 15 25223397 25223397 C G SNRPN Missense_Mutation p.P206R 0.15 deleterious(0.01) unknown(0) TCGA-95-A4VN-01 15 27128315 27128315 C A GABRA5 Missense_Mutation p.R71S 0.09 tolerated(0.58) benign(0.281) TCGA-95-A4VN-01 15 27772716 27772716 G T GABRG3 Missense_Mutation p.A335S 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-95-A4VN-01 15 35174838 35174838 T A AQR Missense_Mutation p.E1010D 0.22 deleterious(0) possibly_damaging(0.791) TCGA-95-A4VN-01 15 37109453 37109453 C T CSNK1A1P1 RNA 0.19 TCGA-95-A4VN-01 15 49716496 49716496 T A FGF7 Translation_Start_Site p.M1? 0.13 deleterious(0) possibly_damaging(0.888) TCGA-95-A4VN-01 15 49882153 49882153 T G FAM227B Missense_Mutation p.T53P 0.07 tolerated(0.14) possibly_damaging(0.806) TCGA-95-A4VN-01 15 74702835 74702835 C T SEMA7A 3'UTR 0.19 TCGA-95-A4VN-01 15 98514358 98514358 C A ARRDC4 Intron 0.08 TCGA-95-A4VN-01 16 1143912 1143912 G T C1QTNF8 Nonsense_Mutation p.Y116* 0.27 TCGA-95-A4VN-01 16 1545401 1545401 G T TELO2 Missense_Mutation p.E130D 0.23 tolerated(0.6) benign(0.005) TCGA-95-A4VN-01 16 30567267 30567267 G A ZNF764 Missense_Mutation p.R159C 0.11 tolerated(0.14) benign(0.049) TCGA-95-A4VN-01 16 31382471 31382471 G T ITGAX Missense_Mutation p.D593Y 0.09 deleterious(0) probably_damaging(0.997) TCGA-95-A4VN-01 16 31391126 31391126 G A ITGAX Missense_Mutation p.V973M 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-95-A4VN-01 16 31393295 31393295 G T ITGAX 3'UTR 0.16 TCGA-95-A4VN-01 16 3139796 3139796 C A ZSCAN10 Nonsense_Mutation p.E492* 0.28 TCGA-95-A4VN-01 16 3801726 3801726 C A CREBBP Splice_Site p.X1260_splice 0.11 TCGA-95-A4VN-01 16 71318473 71318473 C A CMTR2 Nonsense_Mutation p.E451* 0.19 TCGA-95-A4VN-01 16 72984519 72984519 C G ZFHX3 Missense_Mutation p.G1022A 0.08 probably_damaging(0.996) TCGA-95-A4VN-01 16 74750325 74750325 A C FA2H Missense_Mutation p.F320C 0.24 deleterious(0) probably_damaging(0.95) TCGA-95-A4VN-01 16 85936518 85936518 C T IRF8 Intron 0.11 TCGA-95-A4VN-01 16 8997213 8997213 T C USP7 Missense_Mutation p.Y584C 0.14 deleterious(0) benign(0.009) TCGA-95-A4VN-01 17 10247286 10247286 A T MYH13 Silent p.A575A 0.11 TCGA-95-A4VN-01 17 16527816 16527816 C T ZNF624 Silent p.E128E 0.08 TCGA-95-A4VN-01 17 27804710 27804710 C T TAOK1 Missense_Mutation p.S113L 0.15 deleterious(0) possibly_damaging(0.757) TCGA-95-A4VN-01 17 3119077 3119077 C A OR1A1 Missense_Mutation p.L55I 0.06 deleterious(0) benign(0.242) TCGA-95-A4VN-01 17 3379592 3379592 G T ASPA Nonsense_Mutation p.E47* 0.09 TCGA-95-A4VN-01 17 34304603 34304603 C A CCL16 Nonstop_Mutation p.*121Lext*1 0.09 TCGA-95-A4VN-01 17 39595080 39595080 C T KRT38 Missense_Mutation p.E255K 0.25 deleterious(0) benign(0.122) TCGA-95-A4VN-01 17 41063139 41063139 C T G6PC Missense_Mutation p.P257L 0.10 deleterious(0.04) probably_damaging(0.971) TCGA-95-A4VN-01 17 53046065 53046065 G T COX11 5'UTR 0.12 TCGA-95-A4VN-01 17 56699131 56699131 T A TEX14 Missense_Mutation p.Q145L 0.29 deleterious(0) possibly_damaging(0.821) TCGA-95-A4VN-01 17 59760748 59760748 T A BRIP1 Missense_Mutation p.E1220V 0.25 deleterious_low_confidence(0) benign(0.232) TCGA-95-A4VN-01 17 61987493 61987493 G A CSHL1 Intron 0.08 TCGA-95-A4VN-01 17 6547882 6547882 G A MED31 Nonsense_Mutation p.Q101* 0.09 TCGA-95-A4VN-01 17 67249975 67249975 T C ABCA5 Missense_Mutation p.Q1427R 0.05 tolerated(0.09) probably_damaging(0.933) TCGA-95-A4VN-01 17 72310318 72310318 A G DNAI2 Missense_Mutation p.E594G 0.07 tolerated_low_confidence(0.21) unknown(0) TCGA-95-A4VN-01 17 72350601 72350601 G C KIF19 Missense_Mutation p.R870P 0.22 deleterious(0.05) possibly_damaging(0.448) TCGA-95-A4VN-01 17 7246853 7246853 G T ACAP1 Missense_Mutation p.R167L 0.10 deleterious(0) benign(0.012) TCGA-95-A4VN-01 17 7330028 7330028 C A C17orf74 Missense_Mutation p.L240M 0.10 tolerated(0.07) probably_damaging(0.934) TCGA-95-A4VN-01 18 13825921 13825921 G T MC5R Nonsense_Mutation p.E53* 0.13 TCGA-95-A4VN-01 18 47340597 47340597 G C ACAA2 5'Flank 0.12 TCGA-95-A4VN-01 18 51797789 51797789 G T POLI Missense_Mutation p.D59Y 0.10 deleterious(0) probably_damaging(1) TCGA-95-A4VN-01 18 52924593 52924593 C A TCF4 Nonsense_Mutation p.G469* 0.16 TCGA-95-A4VN-01 18 54814762 54814762 C A BOD1L2 Missense_Mutation p.S73R 0.12 tolerated(1) benign(0.006) TCGA-95-A4VN-01 18 55024694 55024694 G T ST8SIA3 Missense_Mutation p.V285F 0.08 benign(0.042) TCGA-95-A4VN-01 18 59854698 59854698 G T KIAA1468 5'UTR 0.12 TCGA-95-A4VN-01 18 59854699 59854699 G T KIAA1468 5'UTR 0.12 TCGA-95-A4VN-01 18 63547762 63547762 G T CDH7 Nonsense_Mutation p.E664* 0.14 TCGA-95-A4VN-01 18 67562943 67562943 C G CD226 Missense_Mutation p.A241P 0.06 deleterious(0) possibly_damaging(0.548) TCGA-95-A4VN-01 18 77477579 77477579 G T CTDP1 Missense_Mutation p.V705L 0.11 deleterious(0.03) probably_damaging(0.967) TCGA-95-A4VN-01 19 15133836 15133836 C G CCDC105 Missense_Mutation p.Q469E 0.12 deleterious(0.01) benign(0.001) TCGA-95-A4VN-01 19 19338191 19338191 G C NCAN Missense_Mutation p.E588Q 0.11 tolerated(0.12) benign(0.031) TCGA-95-A4VN-01 19 2834360 2834360 G T ZNF554 Missense_Mutation p.G376V 0.17 deleterious(0) probably_damaging(1) TCGA-95-A4VN-01 19 30934582 30934582 A T ZNF536 Missense_Mutation p.Q38L 0.12 deleterious_low_confidence(0) benign(0.149) TCGA-95-A4VN-01 19 31039625 31039625 C A ZNF536 Missense_Mutation p.N1033K 0.15 tolerated(0.82) benign(0.031) TCGA-95-A4VN-01 19 33600881 33600881 G T GPATCH1 Missense_Mutation p.R515L 0.10 deleterious(0) probably_damaging(0.997) TCGA-95-A4VN-01 19 35250513 35250513 C A ZNF599 Missense_Mutation p.G398V 0.05 tolerated(0.34) benign(0.079) TCGA-95-A4VN-01 19 36271850 36271850 C T ARHGAP33 Silent p.A286A 0.15 TCGA-95-A4VN-01 19 37117630 37117630 C G ZNF382 Silent p.L277L 0.10 TCGA-95-A4VN-01 19 3783828 3783828 A T MATK Missense_Mutation p.L190H 0.08 deleterious(0) probably_damaging(1) TCGA-95-A4VN-01 19 37853203 37853203 G T HKR1 Missense_Mutation p.G169V 0.11 tolerated(0.07) benign(0.001) TCGA-95-A4VN-01 19 37879790 37879791 - T ZNF527 Frame_Shift_Ins p.D281* 0.15 TCGA-95-A4VN-01 19 3909598 3909598 C A ATCAY Nonsense_Mutation p.Y254* 0.32 TCGA-95-A4VN-01 19 40408562 40408562 G A FCGBP Missense_Mutation p.S1426F 0.18 probably_damaging(0.999) TCGA-95-A4VN-01 19 422251 422251 C A SHC2 Silent p.G505G 0.09 TCGA-95-A4VN-01 19 422252 422252 C A SHC2 Missense_Mutation p.G505V 0.09 deleterious(0) probably_damaging(1) TCGA-95-A4VN-01 19 43259277 43259277 G T PSG8 Missense_Mutation p.P284H 0.13 deleterious(0.03) benign(0.314) TCGA-95-A4VN-01 19 43433615 43433615 G T PSG7 Missense_Mutation p.P230T 0.14 deleterious(0.02) possibly_damaging(0.89) TCGA-95-A4VN-01 19 43708377 43708377 G A PSG4 Missense_Mutation p.P31S 0.10 deleterious(0.02) probably_damaging(0.997) TCGA-95-A4VN-01 19 45452002 45452002 C G APOC2 Missense_Mutation p.P34A 0.22 tolerated(0.12) benign(0.253) TCGA-95-A4VN-01 19 49404089 49404089 G C NUCB1 Silent p.L12L 0.08 TCGA-95-A4VN-01 19 49619582 49619582 C T LIN7B Silent p.P97P 0.20 TCGA-95-A4VN-01 19 51671384 51671384 C A CTD-3187F8.14 Intron 0.12 TCGA-95-A4VN-01 19 51871757 51871757 G C CLDND2 Silent p.S25S 0.14 TCGA-95-A4VN-01 19 52619554 52619554 T G ZNF616 Missense_Mutation p.Q288P 0.07 deleterious(0.01) possibly_damaging(0.822) TCGA-95-A4VN-01 19 54722657 54722657 G T LILRB3 Missense_Mutation p.P493T 0.14 tolerated(0.18) probably_damaging(0.999) TCGA-95-A4VN-01 19 54850362 54850362 C A LILRA4 Translation_Start_Site p.M1? 0.05 deleterious(0.01) benign(0) TCGA-95-A4VN-01 19 55106139 55106139 C A LILRA1 Missense_Mutation p.P27H 0.05 tolerated(0.12) benign(0.063) TCGA-95-A4VN-01 19 55179430 55179430 C G LILRB4 Missense_Mutation p.P436R 0.05 deleterious(0.03) benign(0.121) TCGA-95-A4VN-01 19 56313106 56313106 C A NLRP11 Splice_Site p.X668_splice 0.14 TCGA-95-A4VN-01 19 56466283 56466283 G A NLRP8 Missense_Mutation p.G287S 0.18 tolerated(0.55) probably_damaging(0.995) TCGA-95-A4VN-01 19 56539573 56539573 C G NLRP5 Silent p.P658P 0.13 TCGA-95-A4VN-01 19 57840085 57840085 G T ZNF543 Missense_Mutation p.G419W 0.16 deleterious(0) probably_damaging(1) TCGA-95-A4VN-01 19 58601749 58601749 C A ZSCAN18 Silent p.L18L 0.19 TCGA-95-A4VN-01 19 5866564 5866564 G A FUT5 3'UTR 0.20 TCGA-95-A4VN-01 19 7985243 7985243 C A SNAPC2 5'UTR 0.20 TCGA-95-A4VN-01 19 8121319 8121319 G T CCL25 Missense_Mutation p.M87I 0.09 tolerated(0.09) benign(0.115) TCGA-95-A4VN-01 19 8152967 8152967 G T FBN3 Missense_Mutation p.P2158H 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-95-A4VN-01 19 9000192 9000192 G T MUC16 Missense_Mutation p.T13522N 0.10 probably_damaging(0.976) TCGA-95-A4VN-01 19 9014602 9014602 C G MUC16 Silent p.L12791L 0.08 TCGA-95-A4VN-01 19 9049680 9049680 C G MUC16 Missense_Mutation p.A10651P 0.09 benign(0.145) TCGA-95-A4VN-01 19 9213556 9213556 G C OR7G2 Missense_Mutation p.R143G 0.11 deleterious(0.01) probably_damaging(0.91) TCGA-95-A4VN-01 19 9325138 9325138 T A OR7D4 Missense_Mutation p.I126F 0.07 deleterious(0) possibly_damaging(0.891) TCGA-95-A4VN-01 19 9361855 9361855 G C OR7E24 Missense_Mutation p.A46P 0.18 deleterious(0.03) benign(0.01) TCGA-95-A4VN-01 19 9491821 9491821 C T ZNF177 Nonsense_Mutation p.Q272* 0.12 TCGA-95-A4VN-01 1 103491489 103491489 T A COL11A1 Intron 0.12 TCGA-95-A4VN-01 1 104160622 104160622 C A AMY2A Missense_Mutation p.P72H 0.06 deleterious(0) probably_damaging(1) TCGA-95-A4VN-01 1 108138873 108138873 G T VAV3 Missense_Mutation p.H771N 0.06 tolerated(0.41) benign(0) TCGA-95-A4VN-01 1 114948266 114948266 A G TRIM33 Missense_Mutation p.M845T 0.06 tolerated(0.62) benign(0) TCGA-95-A4VN-01 1 11562145 11562145 G T PTCHD2 Missense_Mutation p.G366C 0.32 deleterious(0) probably_damaging(1) TCGA-95-A4VN-01 1 11580787 11580787 C G PTCHD2 Missense_Mutation p.S748R 0.10 deleterious(0.03) probably_damaging(0.915) TCGA-95-A4VN-01 1 117564488 117564488 A T CD101 Missense_Mutation p.S771C 0.13 deleterious(0.02) probably_damaging(0.964) TCGA-95-A4VN-01 1 1254843 1254843 C T CPSF3L Missense_Mutation p.G94R 0.12 deleterious(0) probably_damaging(0.997) TCGA-95-A4VN-01 1 150255532 150255532 A G C1orf51 5'UTR 0.31 TCGA-95-A4VN-01 1 151630885 151630885 G T SNX27 Nonsense_Mutation p.E240* 0.13 TCGA-95-A4VN-01 1 152276706 152276706 A T FLG Silent p.S3552S 0.28 TCGA-95-A4VN-01 1 152276900 152276900 G T FLG Missense_Mutation p.Q3488K 0.26 unknown(0) TCGA-95-A4VN-01 1 154931808 154931808 C G PYGO2 Missense_Mutation p.G223A 0.24 tolerated(0.31) probably_damaging(0.91) TCGA-95-A4VN-01 1 155230379 155230379 C G SCAMP3 Silent p.S72S 0.07 TCGA-95-A4VN-01 1 155796655 155796655 C G GON4L Missense_Mutation p.E224Q 0.08 deleterious(0.02) benign(0.007) TCGA-95-A4VN-01 1 157514753 157514753 C A FCRL5 Missense_Mutation p.A143S 0.22 tolerated(0.64) benign(0.101) TCGA-95-A4VN-01 1 159799683 159799683 C T SLAMF8 Missense_Mutation p.A23V 0.15 tolerated(0.17) benign(0.007) TCGA-95-A4VN-01 1 161682974 161682974 C A FCRLA Missense_Mutation p.P318Q 0.18 deleterious(0.05) probably_damaging(0.996) TCGA-95-A4VN-01 1 165218838 165218838 G C LMX1A Missense_Mutation p.I101M 0.09 deleterious(0) probably_damaging(0.978) TCGA-95-A4VN-01 1 165877072 165877072 C T UCK2 3'UTR 0.10 TCGA-95-A4VN-01 1 165877073 165877073 G C UCK2 3'UTR 0.10 TCGA-95-A4VN-01 1 171621537 171621537 T A MYOC Missense_Mutation p.H72L 0.15 tolerated_low_confidence(0.11) benign(0.001) TCGA-95-A4VN-01 1 175054578 175054578 G A TNN Silent p.V424V 0.10 TCGA-95-A4VN-01 1 175067503 175067503 G T TNN Missense_Mutation p.V631L 0.25 deleterious(0.05) possibly_damaging(0.483) TCGA-95-A4VN-01 1 175067722 175067722 G T TNN Missense_Mutation p.A704S 0.13 deleterious(0.03) possibly_damaging(0.847) TCGA-95-A4VN-01 1 176833515 176833515 C G ASTN1 Missense_Mutation p.D1264H 0.04 tolerated_low_confidence(0.12) benign(0.001) TCGA-95-A4VN-01 1 177911050 177911050 T C SEC16B Silent p.L669L 0.08 TCGA-95-A4VN-01 1 179078092 179078092 G A ABL2 Silent p.A770A 0.16 TCGA-95-A4VN-01 1 183515282 183515282 C G SMG7 Missense_Mutation p.P805R 0.09 deleterious_low_confidence(0) possibly_damaging(0.901) TCGA-95-A4VN-01 1 186282802 186282802 C T TPR 3'UTR 0.13 TCGA-95-A4VN-01 1 190203601 190203601 C G BRINP3 Missense_Mutation p.E209Q 0.05 deleterious(0) probably_damaging(0.981) TCGA-95-A4VN-01 1 1959083 1959083 C A GABRD Missense_Mutation p.L180M 0.12 deleterious(0) probably_damaging(0.974) TCGA-95-A4VN-01 1 202092445 202092445 C T GPR37L1 Silent p.N118N 0.07 TCGA-95-A4VN-01 1 203054712 203054712 G T MYOG Silent p.I126I 0.16 TCGA-95-A4VN-01 1 203696707 203696707 G T ATP2B4 Intron 0.11 TCGA-95-A4VN-01 1 204587305 204587305 T A LRRN2 Missense_Mutation p.T606S 0.24 tolerated(0.32) benign(0.015) TCGA-95-A4VN-01 1 204588137 204588137 G C LRRN2 Silent p.P328P 0.30 TCGA-95-A4VN-01 1 205070793 205070793 G A RBBP5 Silent p.F189F 0.08 TCGA-95-A4VN-01 1 207718657 207718657 T A CR1 Nonsense_Mutation p.C747* 0.26 TCGA-95-A4VN-01 1 207850819 207850819 G A CR1L Silent p.L61L 0.04 TCGA-95-A4VN-01 1 21053505 21053505 C A SH2D5 Missense_Mutation p.G78W 0.16 deleterious(0.02) probably_damaging(0.986) TCGA-95-A4VN-01 1 216258142 216258142 C A USH2A Nonsense_Mutation p.E1689* 0.24 TCGA-95-A4VN-01 1 21936088 21936088 C A RAP1GAP Missense_Mutation p.D415Y 0.08 deleterious(0.01) possibly_damaging(0.893) TCGA-95-A4VN-01 1 22161201 22161201 G A HSPG2 Missense_Mutation p.T3564I 0.23 benign(0.297) TCGA-95-A4VN-01 1 225155412 225155412 A G DNAH14 Intron 0.26 TCGA-95-A4VN-01 1 228495849 228495849 G T OBSCN Silent p.A5125A 0.18 TCGA-95-A4VN-01 1 22973860 22973860 C A C1QC Missense_Mutation p.P108T 0.13 tolerated(0.09) possibly_damaging(0.723) TCGA-95-A4VN-01 1 230472947 230472947 T A PGBD5 Missense_Mutation p.S259C 0.09 deleterious(0.02) possibly_damaging(0.796) TCGA-95-A4VN-01 1 231060705 231060705 C A TTC13 Missense_Mutation p.A535S 0.18 tolerated(0.43) benign(0.296) TCGA-95-A4VN-01 1 235295003 235295003 G T RBM34 3'UTR 0.22 TCGA-95-A4VN-01 1 235331875 235331875 C A ARID4B Missense_Mutation p.A1302S 0.14 tolerated_low_confidence(1) benign(0.004) TCGA-95-A4VN-01 1 236306161 236306163 TCT - GPR137B In_Frame_Del p.F81del 0.11 TCGA-95-A4VN-01 1 236849944 236849944 C A ACTN2 5'UTR 0.10 TCGA-95-A4VN-01 1 237729895 237729895 C A RYR2 Silent p.T1081T 0.06 TCGA-95-A4VN-01 1 237880546 237880546 C A RYR2 Silent p.R3458R 0.10 TCGA-95-A4VN-01 1 237969473 237969473 G T RYR2 Missense_Mutation p.V4730F 0.14 benign(0.157) TCGA-95-A4VN-01 1 243504397 243504397 A T SDCCAG8 Silent p.T426T 0.11 TCGA-95-A4VN-01 1 247582379 247582379 G T NLRP3 Missense_Mutation p.G95C 0.21 tolerated(0.11) benign(0) TCGA-95-A4VN-01 1 247978600 247978600 A T OR14A16 Silent p.T144T 0.12 TCGA-95-A4VN-01 1 248224409 248224409 G A OR2L3 Silent p.L142L 0.14 TCGA-95-A4VN-01 1 31769578 31769578 A T SNRNP40 Silent p.R7R 0.07 TCGA-95-A4VN-01 1 3703872 3703872 C A LRRC47 Silent p.T206T 0.23 TCGA-95-A4VN-01 1 52991850 52991850 T C ZCCHC11 Missense_Mutation p.K35E 0.22 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-95-A4VN-01 1 70478695 70478695 C A LRRC7 Silent p.R353R 0.13 TCGA-95-A4VN-01 1 75038705 75038705 G T C1orf173 Missense_Mutation p.Q897K 0.15 tolerated(0.08) benign(0.173) TCGA-95-A4VN-01 1 84700924 84700924 A C PRKACB Missense_Mutation p.Y378S 0.14 deleterious(0.01) possibly_damaging(0.853) TCGA-95-A4VN-01 20 1615916 1615916 G T SIRPG Missense_Mutation p.P360T 0.22 tolerated(0.22) benign(0.017) TCGA-95-A4VN-01 20 31388716 31388716 A T DNMT3B Missense_Mutation p.R661W 0.17 deleterious(0) probably_damaging(0.998) TCGA-95-A4VN-01 20 33370043 33370043 C T NCOA6 Missense_Mutation p.S39N 0.13 benign(0.001) TCGA-95-A4VN-01 20 33609050 33609050 G A TRPC4AP Silent p.Y387Y 0.12 TCGA-95-A4VN-01 20 33609144 33609144 G A TRPC4AP Missense_Mutation p.P356L 0.13 tolerated(0.68) benign(0.001) TCGA-95-A4VN-01 20 36952440 36952440 G T BPI Missense_Mutation p.D313Y 0.10 deleterious(0.01) probably_damaging(0.932) TCGA-95-A4VN-01 20 44045215 44045215 A TC PIGT Frame_Shift_Ins p.R83Pfs*40 0.19 TCGA-95-A4VN-01 20 47851569 47851569 G T DDX27 Silent p.L488L 0.07 TCGA-95-A4VN-01 20 54974129 54974129 G T CSTF1 Missense_Mutation p.C251F 0.16 deleterious(0) probably_damaging(0.995) TCGA-95-A4VN-01 20 60738638 60738638 G T SS18L1 Missense_Mutation p.M227I 0.21 tolerated_low_confidence(0.11) benign(0.034) TCGA-95-A4VN-01 20 62612617 62612617 C G PRPF6 Missense_Mutation p.P7A 0.31 tolerated(1) benign(0.002) TCGA-95-A4VN-01 20 896566 896566 T G ANGPT4 Missense_Mutation p.T98P 0.05 deleterious(0.01) benign(0.159) TCGA-95-A4VN-01 21 15858298 15858298 C A SAMSN1 Missense_Mutation p.D421Y 0.11 deleterious(0) probably_damaging(0.994) TCGA-95-A4VN-01 21 31988849 31988849 G A KRTAP20-1 Missense_Mutation p.G26S 0.05 unknown(0) TCGA-95-A4VN-01 21 39426911 39426911 G T DSCR4 3'UTR 0.13 TCGA-95-A4VN-01 21 47532110 47532110 G T COL6A2 Silent p.P111P 0.11 TCGA-95-A4VN-01 22 16287446 16287446 C G POTEH Missense_Mutation p.R147T 0.05 tolerated(0.05) benign(0.071) TCGA-95-A4VN-01 22 17072824 17072824 C T CCT8L2 Missense_Mutation p.C206Y 0.11 deleterious(0.01) probably_damaging(1) TCGA-95-A4VN-01 22 21363842 21363842 G T AC002472.1 5'Flank 0.50 TCGA-95-A4VN-01 22 22868922 22868922 T A ZNF280A Missense_Mutation p.T345S 0.05 tolerated(0.05) benign(0.209) TCGA-95-A4VN-01 22 23040432 23040432 C G IGLV2-23 5'UTR 0.22 TCGA-95-A4VN-01 22 23603639 23603639 A T BCR Missense_Mutation p.E555V 0.14 deleterious(0.03) probably_damaging(0.937) TCGA-95-A4VN-01 22 29837654 29837654 C A RFPL1 Missense_Mutation p.S166Y 0.20 tolerated(0.12) benign(0.411) TCGA-95-A4VN-01 22 36690172 36690172 C A MYH9 Missense_Mutation p.R1268L 0.10 benign(0.235) TCGA-95-A4VN-01 22 38212812 38212812 G T GCAT Intron 0.18 TCGA-95-A4VN-01 22 45595766 45595766 C A KIAA0930 Missense_Mutation p.D340Y 0.09 deleterious(0.01) possibly_damaging(0.9) TCGA-95-A4VN-01 22 45595767 45595767 C A KIAA0930 Missense_Mutation p.E339D 0.09 tolerated(0.5) benign(0.002) TCGA-95-A4VN-01 22 45959018 45959018 G C FBLN1 Intron 0.07 TCGA-95-A4VN-01 2 103299781 103299781 T G SLC9A2 Missense_Mutation p.Y356D 0.11 deleterious(0.05) probably_damaging(0.993) TCGA-95-A4VN-01 2 107029646 107029646 G T RGPD3 Missense_Mutation p.F1720L 0.18 deleterious_low_confidence(0) benign(0.418) TCGA-95-A4VN-01 2 119604484 119604484 G T EN1 Missense_Mutation p.A87E 0.13 tolerated_low_confidence(0.28) unknown(0) TCGA-95-A4VN-01 2 119914346 119914346 T A C1QL2 3'UTR 0.22 TCGA-95-A4VN-01 2 145157076 145157076 G C ZEB2 Missense_Mutation p.R560G 0.08 tolerated(0.25) benign(0.115) TCGA-95-A4VN-01 2 148705695 148705695 T A ORC4 Silent p.I229I 0.09 TCGA-95-A4VN-01 2 158443733 158443733 A T ACVR1C Missense_Mutation p.D90E 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-95-A4VN-01 2 159519781 159519781 C T PKP4 Intron 0.18 TCGA-95-A4VN-01 2 161051903 161051903 T G ITGB6 Silent p.P190P 0.06 TCGA-95-A4VN-01 2 162751332 162751332 C T SLC4A10 Silent p.S446S 0.08 TCGA-95-A4VN-01 2 162761322 162761322 G T SLC4A10 Missense_Mutation p.G552W 0.13 deleterious(0) probably_damaging(1) TCGA-95-A4VN-01 2 167262275 167262275 G A SCN7A Nonsense_Mutation p.R1622* 0.06 TCGA-95-A4VN-01 2 168105913 168105913 T A XIRP2 Missense_Mutation p.S2671T 0.08 benign(0.034) TCGA-95-A4VN-01 2 170537532 170537532 C A CCDC173 Missense_Mutation p.W93C 0.14 deleterious(0) probably_damaging(0.969) TCGA-95-A4VN-01 2 179554582 179554582 G A TTN Missense_Mutation p.P10602S 0.12 TCGA-95-A4VN-01 2 179611788 179611788 T A TTN Intron 0.14 TCGA-95-A4VN-01 2 182350692 182350692 G T ITGA4 Missense_Mutation p.G376C 0.15 deleterious(0) probably_damaging(1) TCGA-95-A4VN-01 2 183846073 183846073 C A NCKAP1 Nonsense_Mutation p.E420* 0.16 TCGA-95-A4VN-01 2 193059097 193059097 T G TMEFF2 Missense_Mutation p.T52P 0.12 tolerated(0.09) possibly_damaging(0.694) TCGA-95-A4VN-01 2 201369539 201369539 T C KCTD18 Missense_Mutation p.S102G 0.14 deleterious(0.04) possibly_damaging(0.827) TCGA-95-A4VN-01 2 21233700 21233700 G T APOB Missense_Mutation p.L2014M 0.13 probably_damaging(0.996) TCGA-95-A4VN-01 2 21234878 21234878 G T APOB Missense_Mutation p.S1621Y 0.17 possibly_damaging(0.817) TCGA-95-A4VN-01 2 220047172 220047172 G T FAM134A Nonsense_Mutation p.E485* 0.13 TCGA-95-A4VN-01 2 225652093 225652093 A T DOCK10 Missense_Mutation p.Y1814N 0.15 deleterious(0.01) benign(0.002) TCGA-95-A4VN-01 2 228195496 228195496 G A MFF Missense_Mutation p.G65R 0.17 tolerated(0.14) benign(0.012) TCGA-95-A4VN-01 2 231036426 231036426 C A SP110 Missense_Mutation p.G625C 0.07 deleterious(0) probably_damaging(0.984) TCGA-95-A4VN-01 2 233925280 233925280 G T INPP5D Missense_Mutation p.R31L 0.24 deleterious(0) probably_damaging(1) TCGA-95-A4VN-01 2 234851311 234851311 G T TRPM8 Missense_Mutation p.E206D 0.13 tolerated(0.13) probably_damaging(0.985) TCGA-95-A4VN-01 2 238475749 238475749 G T PRLH Missense_Mutation p.K65N 0.18 tolerated(0.06) benign(0.32) TCGA-95-A4VN-01 2 25383955 25383955 C A POMC Nonsense_Mutation p.E267* 0.21 TCGA-95-A4VN-01 2 26203459 26203459 C A KIF3C Missense_Mutation p.R443L 0.11 benign(0.013) TCGA-95-A4VN-01 2 26705354 26705354 C G OTOF Missense_Mutation p.R500P 0.10 tolerated(0.12) probably_damaging(0.999) TCGA-95-A4VN-01 2 30977172 30977172 C A CAPN13 Nonsense_Mutation p.E309* 0.22 TCGA-95-A4VN-01 2 30977173 30977173 C A CAPN13 Silent p.R308R 0.21 TCGA-95-A4VN-01 2 32889483 32889483 G T TTC27 Missense_Mutation p.D252Y 0.06 deleterious(0.01) benign(0.005) TCGA-95-A4VN-01 2 40397449 40397449 C A SLC8A1 Silent p.P670P 0.15 TCGA-95-A4VN-01 2 68882044 68882044 G C PROKR1 Missense_Mutation p.R173P 0.18 deleterious(0) probably_damaging(0.999) TCGA-95-A4VN-01 2 77745853 77745853 G T LRRTM4 Missense_Mutation p.P381H 0.09 tolerated(0.06) possibly_damaging(0.885) TCGA-95-A4VN-01 2 77745854 77745854 G T LRRTM4 Missense_Mutation p.P381T 0.10 tolerated(0.33) benign(0.293) TCGA-95-A4VN-01 2 80529584 80529584 G T LRRTM1 Missense_Mutation p.P454Q 0.14 deleterious(0) probably_damaging(0.996) TCGA-95-A4VN-01 2 85924798 85924798 C T GNLY Missense_Mutation p.T142I 0.23 tolerated(0.71) benign(0.059) TCGA-95-A4VN-01 2 96690230 96690230 G T GPAT2 Missense_Mutation p.H538Q 0.14 tolerated(0.38) benign(0.004) TCGA-95-A4VN-01 2 96952114 96952114 C G SNRNP200 Missense_Mutation p.R1313T 0.07 deleterious(0.03) benign(0.058) TCGA-95-A4VN-01 2 96993594 96993594 G C ITPRIPL1 Missense_Mutation p.V417L 0.21 tolerated(0.17) benign(0.176) TCGA-95-A4VN-01 2 98744728 98744728 G - VWA3B Frame_Shift_Del p.D245Mfs*34 0.12 TCGA-95-A4VN-01 2 98887265 98887265 A T VWA3B Silent p.L988L 0.17 TCGA-95-A4VN-01 3 100413854 100413854 A T GPR128 3'UTR 0.08 TCGA-95-A4VN-01 3 105243211 105243211 G A ALCAM Missense_Mutation p.E85K 0.11 tolerated(0.13) benign(0.297) TCGA-95-A4VN-01 3 112299906 112299906 A G SLC35A5 Silent p.A314A 0.11 TCGA-95-A4VN-01 3 121158875 121158875 T A POLQ Silent p.P2451P 0.15 TCGA-95-A4VN-01 3 121206914 121206914 C A POLQ Missense_Mutation p.G1622W 0.20 tolerated(0.09) possibly_damaging(0.838) TCGA-95-A4VN-01 3 121229085 121229085 T A POLQ Silent p.I539I 0.13 TCGA-95-A4VN-01 3 122634455 122634455 G T SEMA5B Missense_Mutation p.T661K 0.27 deleterious(0.04) possibly_damaging(0.462) TCGA-95-A4VN-01 3 126180502 126180502 C A ZXDC Missense_Mutation p.R668L 0.18 tolerated(0.35) benign(0.002) TCGA-95-A4VN-01 3 127642718 127642718 G C KBTBD12 Missense_Mutation p.E272Q 0.14 tolerated(0.16) probably_damaging(0.999) TCGA-95-A4VN-01 3 129158650 129158650 C G MBD4 Silent p.L9L 0.14 TCGA-95-A4VN-01 3 129251386 129251386 A T RHO Missense_Mutation p.Q236L 0.16 deleterious(0.02) probably_damaging(0.961) TCGA-95-A4VN-01 3 138738703 138738703 G T PRR23B 3'UTR 0.15 TCGA-95-A4VN-01 3 171431738 171431738 C A PLD1 Missense_Mutation p.V286L 0.11 tolerated(0.38) benign(0.159) TCGA-95-A4VN-01 3 172025188 172025188 G T FNDC3B Missense_Mutation p.C366F 0.21 tolerated(0.7) benign(0.008) TCGA-95-A4VN-01 3 173996700 173996700 G T NLGN1 Missense_Mutation p.W303C 0.12 deleterious(0) probably_damaging(0.999) TCGA-95-A4VN-01 3 194062383 194062383 G T CPN2 Missense_Mutation p.T350K 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-95-A4VN-01 3 21478473 21478473 G T ZNF385D Missense_Mutation p.A221E 0.14 deleterious(0) probably_damaging(0.996) TCGA-95-A4VN-01 3 30691886 30691886 G T TGFBR2 Missense_Mutation p.G155C 0.16 deleterious(0.01) probably_damaging(0.939) TCGA-95-A4VN-01 3 30691887 30691887 G T TGFBR2 Missense_Mutation p.G155V 0.17 deleterious(0.05) possibly_damaging(0.757) TCGA-95-A4VN-01 3 3131935 3131935 A T IL5RA Intron 0.13 TCGA-95-A4VN-01 3 37033435 37033435 A C EPM2AIP1 Silent p.L378L 0.14 TCGA-95-A4VN-01 3 42705736 42705736 G C ZBTB47 Missense_Mutation p.K630N 0.11 deleterious(0) unknown(0) TCGA-95-A4VN-01 3 46574296 46574296 A G LRRC2 Silent p.S198S 0.13 TCGA-95-A4VN-01 3 50329971 50329971 G T IFRD2 5'Flank 0.09 TCGA-95-A4VN-01 3 7728045 7728045 C T GRM7 Intron 0.09 TCGA-95-A4VN-01 3 97868603 97868603 C A OR5H14 Missense_Mutation p.A125D 0.16 deleterious(0) probably_damaging(0.998) TCGA-95-A4VN-01 4 122254113 122254113 G A QRFPR Silent p.V220V 0.09 TCGA-95-A4VN-01 4 1305887 1305887 G T MAEA Missense_Mutation p.V64L 0.14 tolerated(0.16) benign(0.024) TCGA-95-A4VN-01 4 155533354 155533354 C A FGG Splice_Site p.X42_splice 0.11 TCGA-95-A4VN-01 4 156711055 156711055 G A GUCY1B3 Missense_Mutation p.D163N 0.16 tolerated(0.46) benign(0.008) TCGA-95-A4VN-01 4 156784816 156784816 G T ASIC5 Missense_Mutation p.S44Y 0.06 tolerated(0.06) possibly_damaging(0.833) TCGA-95-A4VN-01 4 158224786 158224786 C T GRIA2 Silent p.C104C 0.09 TCGA-95-A4VN-01 4 162459369 162459369 C T FSTL5 Missense_Mutation p.V421M 0.15 deleterious(0.02) probably_damaging(0.996) TCGA-95-A4VN-01 4 166929120 166929120 G T TLL1 Missense_Mutation p.M279I 0.07 deleterious(0) benign(0.194) TCGA-95-A4VN-01 4 167020548 167020548 G T TLL1 Missense_Mutation p.G926C 0.08 deleterious(0) probably_damaging(0.981) TCGA-95-A4VN-01 4 177648981 177648981 C T VEGFC Missense_Mutation p.S168N 0.15 tolerated(0.24) probably_damaging(0.924) TCGA-95-A4VN-01 4 187518842 187518842 C - FAT1 Frame_Shift_Del p.G4121Efs*85 0.17 TCGA-95-A4VN-01 4 2951886 2951886 T A NOP14 Missense_Mutation p.S353C 0.18 deleterious(0.03) possibly_damaging(0.859) TCGA-95-A4VN-01 4 39098377 39098377 G T KLHL5 Missense_Mutation p.M439I 0.07 tolerated(0.29) benign(0) TCGA-95-A4VN-01 4 41615569 41615569 C T LIMCH1 Silent p.L191L 0.09 TCGA-95-A4VN-01 4 57181977 57181977 G T KIAA1211 Missense_Mutation p.G770V 0.15 tolerated(0.3) probably_damaging(0.979) TCGA-95-A4VN-01 4 66213891 66213891 G T EPHA5 Missense_Mutation p.P847T 0.14 deleterious(0) probably_damaging(0.998) TCGA-95-A4VN-01 4 70070257 70070257 C A UGT2B11 Missense_Mutation p.D401Y 0.17 deleterious(0) possibly_damaging(0.655) TCGA-95-A4VN-01 4 8469800 8469800 G C TRMT44 Missense_Mutation p.G552R 0.15 tolerated(0.22) possibly_damaging(0.591) TCGA-95-A4VN-01 4 91230686 91230686 G T CCSER1 Missense_Mutation p.K417N 0.21 tolerated_low_confidence(0.1) benign(0.004) TCGA-95-A4VN-01 5 10263288 10263288 G C CCT5 Missense_Mutation p.A454P 0.06 deleterious(0) probably_damaging(0.973) TCGA-95-A4VN-01 5 108380450 108380450 G C FER Missense_Mutation p.E595Q 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-95-A4VN-01 5 109181594 109181594 T A MAN2A1 Nonsense_Mutation p.L910* 0.12 TCGA-95-A4VN-01 5 112418705 112418705 C - MCC Frame_Shift_Del p.V546Yfs*48 0.15 TCGA-95-A4VN-01 5 114879154 114879154 C G FEM1C Missense_Mutation p.D13H 0.16 deleterious(0) possibly_damaging(0.828) TCGA-95-A4VN-01 5 115351445 115351445 G T AQPEP Missense_Mutation p.W913C 0.08 deleterious(0) probably_damaging(1) TCGA-95-A4VN-01 5 121405865 121405865 T A LOX Splice_Site p.X378_splice 0.14 TCGA-95-A4VN-01 5 127664437 127664437 G C FBN2 Missense_Mutation p.C1474W 0.12 deleterious(0) probably_damaging(0.994) TCGA-95-A4VN-01 5 132197389 132197389 A T GDF9 Nonsense_Mutation p.C419* 0.13 TCGA-95-A4VN-01 5 135692767 135692767 C T TRPC7 Silent p.L103L 0.19 TCGA-95-A4VN-01 5 140174856 140174856 A G PCDHA2 Missense_Mutation p.S103G 0.14 tolerated_low_confidence(0.06) benign(0.08) TCGA-95-A4VN-01 5 140188050 140188050 C G PCDHA4 Silent p.T426T 0.16 TCGA-95-A4VN-01 5 140188626 140188626 G T PCDHA4 Silent p.A618A 0.11 TCGA-95-A4VN-01 5 140229519 140229519 G T PCDHA9 Missense_Mutation p.R480L 0.17 tolerated_low_confidence(0.06) benign(0.039) TCGA-95-A4VN-01 5 140476198 140476198 G T PCDHB2 Silent p.L608L 0.07 TCGA-95-A4VN-01 5 140725308 140725308 G A PCDHGA3 Missense_Mutation p.D570N 0.11 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-95-A4VN-01 5 140746036 140746036 G T PCDHGA5 Silent p.V713V 0.11 TCGA-95-A4VN-01 5 140865208 140865208 G C PCDHGC4 Missense_Mutation p.K156N 0.16 tolerated(0.08) benign(0.055) TCGA-95-A4VN-01 5 141242990 141242990 T A PCDH1 Missense_Mutation p.Y969F 0.22 deleterious(0) probably_damaging(0.997) TCGA-95-A4VN-01 5 14601320 14601320 A T FAM105A Splice_Site p.X75_splice 0.06 TCGA-95-A4VN-01 5 148618808 148618808 A T ABLIM3 Intron 0.19 TCGA-95-A4VN-01 5 148627393 148627393 C T ABLIM3 Missense_Mutation p.R534W 0.11 deleterious(0.01) probably_damaging(0.995) TCGA-95-A4VN-01 5 148977366 148977366 A T ARHGEF37 Missense_Mutation p.R12W 0.15 deleterious_low_confidence(0) possibly_damaging(0.619) TCGA-95-A4VN-01 5 150945880 150945880 G A FAT2 Silent p.L871L 0.17 TCGA-95-A4VN-01 5 153406750 153406750 C T FAM114A2 Missense_Mutation p.E259K 0.17 deleterious(0) probably_damaging(0.967) TCGA-95-A4VN-01 5 155771633 155771633 A G SGCD Missense_Mutation p.I46M 0.11 tolerated(0.48) possibly_damaging(0.888) TCGA-95-A4VN-01 5 157065288 157065288 G T SOX30 Missense_Mutation p.F610L 0.15 deleterious(0) probably_damaging(0.997) TCGA-95-A4VN-01 5 157073704 157073704 C A SOX30 Missense_Mutation p.R443L 0.10 deleterious(0.05) benign(0.326) TCGA-95-A4VN-01 5 160763720 160763720 T A GABRB2 Missense_Mutation p.T200S 0.14 tolerated(0.22) possibly_damaging(0.517) TCGA-95-A4VN-01 5 168098472 168098472 G T SLIT3 Silent p.T1286T 0.18 TCGA-95-A4VN-01 5 175530234 175530234 G T FAM153B Silent p.L146L 0.04 TCGA-95-A4VN-01 5 175995688 175995688 C G CDHR2 Missense_Mutation p.A45G 0.17 deleterious(0.01) benign(0.126) TCGA-95-A4VN-01 5 176083119 176083119 T G TSPAN17 Missense_Mutation p.L208R 0.15 tolerated(0.48) benign(0.019) TCGA-95-A4VN-01 5 176517994 176517994 G A FGFR4 Silent p.A164A 0.16 TCGA-95-A4VN-01 5 176517995 176517995 G T FGFR4 Missense_Mutation p.G165W 0.16 deleterious(0) probably_damaging(1) TCGA-95-A4VN-01 5 176815091 176815091 C G SLC34A1 Missense_Mutation p.I247M 0.14 tolerated(0.07) benign(0.01) TCGA-95-A4VN-01 5 177161930 177161930 C A FAM153A Silent p.L146L 0.15 TCGA-95-A4VN-01 5 180486751 180486751 C T BTNL9 Silent p.P499P 0.11 TCGA-95-A4VN-01 5 19747265 19747265 A T CDH18 Silent p.I103I 0.07 TCGA-95-A4VN-01 5 38506061 38506061 G A LIFR Missense_Mutation p.H413Y 0.17 tolerated(1) benign(0.001) TCGA-95-A4VN-01 5 39311243 39311243 C A C9 Silent p.R369R 0.20 TCGA-95-A4VN-01 5 39382780 39382780 G A DAB2 Silent p.S427S 0.26 TCGA-95-A4VN-01 5 44310553 44310553 G A FGF10 Silent p.N135N 0.29 TCGA-95-A4VN-01 5 52780011 52780011 G A FST Silent p.E203E 0.30 TCGA-95-A4VN-01 5 55212558 55212558 G A IL31RA Silent p.L635L 0.21 TCGA-95-A4VN-01 5 79465219 79465219 T A SERINC5 Silent p.G234G 0.06 TCGA-95-A4VN-01 5 80643647 80643647 G A ACOT12 Missense_Mutation p.T200I 0.08 deleterious(0.02) probably_damaging(0.911) TCGA-95-A4VN-01 5 82833254 82833254 G T VCAN Nonsense_Mutation p.E1478* 0.12 TCGA-95-A4VN-01 6 130762217 130762217 G T TMEM200A Missense_Mutation p.R217L 0.14 tolerated_low_confidence(0.3) benign(0.018) TCGA-95-A4VN-01 6 133035163 133035163 C G VNN1 Missense_Mutation p.Q4H 0.13 tolerated_low_confidence(0.52) benign(0.235) TCGA-95-A4VN-01 6 167571239 167571239 C T GPR31 Silent p.L27L 0.20 TCGA-95-A4VN-01 6 24559364 24559364 C A KIAA0319 Missense_Mutation p.V871L 0.09 deleterious(0) possibly_damaging(0.53) TCGA-95-A4VN-01 6 25482500 25482500 G T LRRC16A Missense_Mutation p.S297I 0.15 tolerated(0.13) probably_damaging(0.978) TCGA-95-A4VN-01 6 26189155 26189155 G A HIST1H4D Silent p.L50L 0.18 TCGA-95-A4VN-01 6 29275253 29275253 G A OR14J1 Missense_Mutation p.D263N 0.16 tolerated(0.16) benign(0.169) TCGA-95-A4VN-01 6 29627167 29627167 C A MOG Missense_Mutation p.R54S 0.12 deleterious(0.01) possibly_damaging(0.793) TCGA-95-A4VN-01 6 311963 311963 G T DUSP22 Splice_Site p.X46_splice 0.09 TCGA-95-A4VN-01 6 35704944 35704944 G A ARMC12 Missense_Mutation p.S20N 0.13 deleterious(0.01) benign(0.423) TCGA-95-A4VN-01 6 47759584 47759584 G C OPN5 Missense_Mutation p.W99C 0.14 deleterious(0) probably_damaging(0.988) TCGA-95-A4VN-01 6 49408046 49408046 C T MUT Missense_Mutation p.R610H 0.17 tolerated_low_confidence(0.2) benign(0) TCGA-95-A4VN-01 6 55196616 55196616 G A GFRAL Nonsense_Mutation p.W42* 0.12 TCGA-95-A4VN-01 6 73919796 73919796 G A RP11-257K9.8 3'UTR 0.23 TCGA-95-A4VN-01 6 73919797 73919797 C A RP11-257K9.8 3'UTR 0.24 TCGA-95-A4VN-01 6 89974244 89974244 C A GABRR2 Missense_Mutation p.D325Y 0.13 deleterious(0) probably_damaging(0.989) TCGA-95-A4VN-01 6 89974245 89974245 C A GABRR2 Silent p.V324V 0.13 TCGA-95-A4VN-01 7 100240935 100240935 C T ACTL6B Silent p.Q405Q 0.07 TCGA-95-A4VN-01 7 100350697 100350697 C A ZAN Missense_Mutation p.P990H 0.22 unknown(0) TCGA-95-A4VN-01 7 100680008 100680008 G T MUC17 Missense_Mutation p.A1771S 0.24 benign(0.09) TCGA-95-A4VN-01 7 100684738 100684738 C T MUC17 Silent p.F3347F 0.16 TCGA-95-A4VN-01 7 11676247 11676247 C G THSD7A Missense_Mutation p.E178Q 0.27 tolerated(0.08) probably_damaging(0.922) TCGA-95-A4VN-01 7 124386713 124386713 C A GPR37 Nonsense_Mutation p.E570* 0.10 TCGA-95-A4VN-01 7 134878404 134878404 C A WDR91 Silent p.V472V 0.15 TCGA-95-A4VN-01 7 136849018 136849018 C A hsa-mir-490 Intron 0.20 TCGA-95-A4VN-01 7 143792759 143792759 G T OR2A12 Missense_Mutation p.A187S 0.25 deleterious(0.01) possibly_damaging(0.633) TCGA-95-A4VN-01 7 14724898 14724898 G T DGKB Silent p.G267G 0.09 TCGA-95-A4VN-01 7 150269721 150269721 C G GIMAP4 Missense_Mutation p.A188G 0.06 tolerated(0.16) benign(0.087) TCGA-95-A4VN-01 7 150325213 150325213 G C GIMAP6 Missense_Mutation p.T158S 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-95-A4VN-01 7 150325381 150325381 G C GIMAP6 Missense_Mutation p.P102R 0.07 tolerated(0.1) benign(0.145) TCGA-95-A4VN-01 7 154379564 154379564 G - DPP6 Intron 0.21 TCGA-95-A4VN-01 7 15725885 15725885 C T MEOX2 Missense_Mutation p.C48Y 0.32 tolerated(0.09) probably_damaging(0.979) TCGA-95-A4VN-01 7 157985027 157985027 G T PTPRN2 Missense_Mutation p.P181T 0.11 tolerated(0.16) benign(0.002) TCGA-95-A4VN-01 7 16298087 16298087 T - ISPD Frame_Shift_Del p.E350Kfs*6 0.10 TCGA-95-A4VN-01 7 19184535 19184535 A T FERD3L Missense_Mutation p.S151T 0.08 deleterious(0.02) possibly_damaging(0.574) TCGA-95-A4VN-01 7 19765298 19765298 G T TMEM196 Missense_Mutation p.L100I 0.13 tolerated(0.12) possibly_damaging(0.567) TCGA-95-A4VN-01 7 25163458 25163458 C A CYCS Missense_Mutation p.W60C 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-95-A4VN-01 7 31692433 31692433 T A CCDC129 Intron 0.31 TCGA-95-A4VN-01 7 42079752 42079752 C A GLI3 Missense_Mutation p.D305Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-95-A4VN-01 7 44799012 44799012 A T ZMIZ2 Missense_Mutation p.M316L 0.11 tolerated(0.54) benign(0) TCGA-95-A4VN-01 7 48026916 48026916 T A SUN3 3'UTR 0.37 TCGA-95-A4VN-01 7 50737540 50737540 T A GRB10 Missense_Mutation p.Q128L 0.14 tolerated(0.14) benign(0.002) TCGA-95-A4VN-01 7 53103377 53103377 G T POM121L12 Missense_Mutation p.A5S 0.33 tolerated_low_confidence(0.26) benign(0.001) TCGA-95-A4VN-01 7 53104381 53104381 C A POM121L12 3'UTR 0.59 TCGA-95-A4VN-01 7 55902186 55902186 T G SEPT14 Missense_Mutation p.N218H 0.12 tolerated(0.22) benign(0.29) TCGA-95-A4VN-01 7 57187654 57187654 C A ZNF479 Nonsense_Mutation p.E490* 0.12 TCGA-95-A4VN-01 7 57188280 57188280 G T ZNF479 Missense_Mutation p.S281Y 0.31 tolerated(0.18) probably_damaging(0.943) TCGA-95-A4VN-01 7 57528528 57528528 G T ZNF716 Nonsense_Mutation p.E121* 0.14 TCGA-95-A4VN-01 7 63538477 63538477 C A ZNF727 Silent p.T350T 0.19 TCGA-95-A4VN-01 7 70249928 70249928 G T AUTS2 Missense_Mutation p.G716V 0.11 deleterious(0) probably_damaging(0.971) TCGA-95-A4VN-01 7 71571172 71571172 C A CALN1 Nonsense_Mutation p.E118* 0.27 TCGA-95-A4VN-01 7 73030462 73030462 C A MLXIPL Missense_Mutation p.K113N 0.26 deleterious(0) probably_damaging(0.997) TCGA-95-A4VN-01 7 87022266 87022266 G T CROT Missense_Mutation p.G562V 0.07 deleterious(0.03) probably_damaging(0.954) TCGA-95-A4VN-01 7 95750595 95750595 T C SLC25A13 Missense_Mutation p.T647A 0.05 tolerated(0.08) benign(0.275) TCGA-95-A4VN-01 7 99264375 99264375 G T CYP3A5 Intron 0.11 TCGA-95-A4VN-01 7 99758253 99758253 G T GAL3ST4 Silent p.T253T 0.08 TCGA-95-A4VN-01 8 10466501 10466501 C A RP1L1 Missense_Mutation p.G1703W 0.08 unknown(0) TCGA-95-A4VN-01 8 104897767 104897767 G A RIMS2 Missense_Mutation p.V314M 0.07 tolerated_low_confidence(0.1) possibly_damaging(0.459) TCGA-95-A4VN-01 8 110100365 110100365 C A TRHR Silent p.T208T 0.28 TCGA-95-A4VN-01 8 113569124 113569124 C A CSMD3 Missense_Mutation p.D1368Y 0.45 deleterious(0) probably_damaging(0.998) TCGA-95-A4VN-01 8 131861946 131861946 G T ADCY8 Silent p.R772R 0.10 TCGA-95-A4VN-01 8 143694573 143694573 C A ARC Nonsense_Mutation p.E354* 0.35 TCGA-95-A4VN-01 8 143957789 143957789 G T CYP11B1 Silent p.I274I 0.40 TCGA-95-A4VN-01 8 144650388 144650388 C A MROH6 Missense_Mutation p.W563L 0.28 deleterious(0) probably_damaging(0.999) TCGA-95-A4VN-01 8 15978002 15978002 C A MSR1 Missense_Mutation p.V383F 0.05 deleterious(0.05) possibly_damaging(0.587) TCGA-95-A4VN-01 8 2027014 2027014 G A MYOM2 Missense_Mutation p.A488T 0.06 tolerated(0.25) benign(0.008) TCGA-95-A4VN-01 8 2048736 2048736 G T MYOM2 Silent p.V837V 0.07 TCGA-95-A4VN-01 8 27606081 27606081 C A CCDC25 Silent p.T93T 0.07 TCGA-95-A4VN-01 8 36675211 36675211 G A KCNU1 Missense_Mutation p.A347T 0.06 tolerated(0.72) possibly_damaging(0.708) TCGA-95-A4VN-01 8 37693266 37693266 C T GPR124 Silent p.T676T 0.12 TCGA-95-A4VN-01 8 41563706 41563706 T C ANK1 Silent p.A717A 0.08 TCGA-95-A4VN-01 8 53044586 53044586 T A ST18 Silent p.L866L 0.08 TCGA-95-A4VN-01 8 56663648 56663648 T C TMEM68 Missense_Mutation p.R188G 0.06 deleterious(0) benign(0.158) TCGA-95-A4VN-01 8 61736679 61736680 - T CHD7 Intron 0.22 TCGA-95-A4VN-01 8 75898316 75898316 T C CRISPLD1 Silent p.L32L 0.30 TCGA-95-A4VN-01 8 76476478 76476478 G A HNF4G 3'UTR 0.28 TCGA-95-A4VN-01 8 77766929 77766929 G T ZFHX4 Missense_Mutation p.S2591I 0.10 probably_damaging(0.988) TCGA-95-A4VN-01 8 92030658 92030658 C T TMEM55A Missense_Mutation p.G149D 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-95-A4VN-01 8 99440716 99440716 G A KCNS2 Missense_Mutation p.R170H 0.39 deleterious(0) probably_damaging(0.987) TCGA-95-A4VN-01 9 101817400 101817400 A G COL15A1 Silent p.L1016L 0.22 TCGA-95-A4VN-01 9 110249615 110249615 C T KLF4 Missense_Mutation p.D354N 0.10 tolerated(0.2) benign(0.034) TCGA-95-A4VN-01 9 110249616 110249616 G C KLF4 Silent p.P353P 0.11 TCGA-95-A4VN-01 9 112899928 112899928 C A PALM2-AKAP2 Missense_Mutation p.L702I 0.10 tolerated(0.15) probably_damaging(0.999) TCGA-95-A4VN-01 9 114124179 114124179 C G KIAA0368 3'UTR 0.08 TCGA-95-A4VN-01 9 114454122 114454122 G C C9orf84 Missense_Mutation p.Q1315E 0.09 tolerated(1) benign(0) TCGA-95-A4VN-01 9 119187731 119187731 C A ASTN2 3'UTR 0.27 TCGA-95-A4VN-01 9 120475921 120475921 G A TLR4 Silent p.Q505Q 0.26 TCGA-95-A4VN-01 9 125377785 125377785 T A OR1Q1 Missense_Mutation p.W257R 0.08 tolerated(0.08) possibly_damaging(0.828) TCGA-95-A4VN-01 9 126132439 126132439 C A CRB2 Missense_Mutation p.H369Q 0.06 deleterious(0.02) possibly_damaging(0.683) TCGA-95-A4VN-01 9 134952951 134952951 G C MED27 Missense_Mutation p.L76V 0.06 tolerated(0.33) benign(0.201) TCGA-95-A4VN-01 9 136804229 136804229 C - VAV2 Frame_Shift_Del p.G106Efs*79 0.09 TCGA-95-A4VN-01 9 137778408 137778408 C G FCN2 Missense_Mutation p.A231G 0.19 deleterious(0) probably_damaging(0.982) TCGA-95-A4VN-01 9 137990228 137990228 G T OLFM1 Missense_Mutation p.V167F 0.06 tolerated(0.11) benign(0.02) TCGA-95-A4VN-01 9 139616663 139616663 G A FAM69B Silent p.A131A 0.11 TCGA-95-A4VN-01 9 140968057 140968057 G T CACNA1B Splice_Site p.X1597_splice 0.26 TCGA-95-A4VN-01 9 19786877 19786877 G T SLC24A2 5'UTR 0.15 TCGA-95-A4VN-01 9 21481533 21481533 A G IFNE Missense_Mutation p.L54P 0.18 deleterious(0) probably_damaging(1) TCGA-95-A4VN-01 9 21481558 21481558 G T IFNE Missense_Mutation p.Q46K 0.17 tolerated(0.38) benign(0.192) TCGA-95-A4VN-01 9 35043340 35043340 G A C9orf131 Silent p.R238R 0.19 TCGA-95-A4VN-01 9 6620208 6620208 C A GLDC Missense_Mutation p.R149L 0.23 deleterious(0) probably_damaging(0.999) TCGA-95-A4VN-01 9 79320503 79320503 T C PRUNE2 Silent p.E2229E 0.06 TCGA-95-A4VN-01 9 8524982 8524982 C A PTPRD Missense_Mutation p.V208F 0.26 deleterious(0) probably_damaging(0.999) TCGA-95-A4VN-01 X 100653788 100653788 C A GLA Missense_Mutation p.W262C 0.07 deleterious(0) probably_damaging(1) TCGA-95-A4VN-01 X 101857939 101857939 G T ARMCX5 Missense_Mutation p.K290N 0.07 deleterious(0.05) probably_damaging(0.997) TCGA-95-A4VN-01 X 105179267 105179267 A T NRK Missense_Mutation p.H1203L 0.08 deleterious(0) probably_damaging(0.994) TCGA-95-A4VN-01 X 105451000 105451000 G A MUM1L1 Silent p.P525P 0.10 TCGA-95-A4VN-01 X 108652298 108652298 G A GUCY2F Silent p.L631L 0.05 TCGA-95-A4VN-01 X 114141858 114141858 C T HTR2C Silent p.T419T 0.04 TCGA-95-A4VN-01 X 118723759 118723759 C A NKRF Missense_Mutation p.E558D 0.04 tolerated(0.14) benign(0.017) TCGA-95-A4VN-01 X 125686013 125686013 G T DCAF12L1 Missense_Mutation p.H193Q 0.18 deleterious(0) probably_damaging(1) TCGA-95-A4VN-01 X 125686366 125686366 G C DCAF12L1 Missense_Mutation p.R76G 0.16 tolerated(0.08) benign(0.009) TCGA-95-A4VN-01 X 12940355 12940355 A T TLR8 3'UTR 0.07 TCGA-95-A4VN-01 X 130413277 130413277 A T IGSF1 Missense_Mutation p.M562K 0.10 deleterious(0) probably_damaging(0.991) TCGA-95-A4VN-01 X 134156105 134156105 C A FAM127C 3'UTR 0.13 TCGA-95-A4VN-01 X 139038040 139038040 A C CXorf66 3'UTR 0.14 TCGA-95-A4VN-01 X 140984987 140984987 G T MAGEC3 Missense_Mutation p.E481D 0.14 tolerated(0.38) possibly_damaging(0.549) TCGA-95-A4VN-01 X 147063199 147063199 G A FMR1NB Missense_Mutation p.G93R 0.19 tolerated(0.28) probably_damaging(0.98) TCGA-95-A4VN-01 X 149984521 149984521 G T CD99L2 Missense_Mutation p.T54N 0.04 tolerated(0.41) benign(0.311) TCGA-95-A4VN-01 X 151283846 151283846 G A RP11-1007I13.4 RNA 0.06 TCGA-95-A4VN-01 X 153296438 153296438 C A MECP2 Missense_Mutation p.A293S 0.16 tolerated(0.06) possibly_damaging(0.569) TCGA-95-A4VN-01 X 153780267 153780267 G C IKBKG Missense_Mutation p.S85T 0.07 deleterious(0.03) benign(0.28) TCGA-95-A4VN-01 X 15584408 15584408 G T ACE2 Silent p.I694I 0.05 TCGA-95-A4VN-01 X 23411706 23411706 C T PTCHD1 Nonsense_Mutation p.R691* 0.22 TCGA-95-A4VN-01 X 23740786 23740786 C A ACOT9 Splice_Site p.X162_splice 0.05 TCGA-95-A4VN-01 X 23740787 23740787 C A ACOT9 Missense_Mutation p.D162Y 0.05 deleterious(0.01) possibly_damaging(0.847) TCGA-95-A4VN-01 X 24830861 24830861 G T POLA1 Missense_Mutation p.K1053N 0.04 deleterious(0) probably_damaging(0.999) TCGA-95-A4VN-01 X 30852176 30852176 G T TAB3 Missense_Mutation p.A661D 0.08 tolerated(0.28) benign(0.013) TCGA-95-A4VN-01 X 3238886 3238886 G T MXRA5 Missense_Mutation p.L1614I 0.15 tolerated(0.35) benign(0.218) TCGA-95-A4VN-01 X 34148749 34148749 C A FAM47A Missense_Mutation p.K549N 0.13 deleterious(0.03) possibly_damaging(0.607) TCGA-95-A4VN-01 X 35966465 35966465 C A CXorf22 Silent p.P184P 0.12 TCGA-95-A4VN-01 X 39932705 39932705 C A BCOR Missense_Mutation p.G632C 0.12 deleterious(0) probably_damaging(1) TCGA-95-A4VN-01 X 46360723 46360723 C A ZNF674 Missense_Mutation p.D101Y 0.05 deleterious(0) possibly_damaging(0.467) TCGA-95-A4VN-01 X 47487552 47487552 C A CFP Missense_Mutation p.G118W 0.18 deleterious(0) probably_damaging(0.996) TCGA-95-A4VN-01 X 49070710 49070710 G A CACNA1F Missense_Mutation p.P1217L 0.06 tolerated(0.72) benign(0.181) TCGA-95-A4VN-01 X 49070711 49070711 G T CACNA1F Missense_Mutation p.P1217T 0.06 tolerated(0.41) benign(0.313) TCGA-95-A4VN-01 X 51638314 51638314 G T MAGED1 Missense_Mutation p.A127S 0.09 tolerated_low_confidence(0.28) unknown(0) TCGA-95-A4VN-01 X 53596699 53596699 A T HUWE1 Missense_Mutation p.L2134Q 0.07 possibly_damaging(0.897) TCGA-95-A4VN-01 X 57935970 57935970 C A ZXDA Missense_Mutation p.Q295H 0.10 deleterious(0.03) probably_damaging(0.993) TCGA-95-A4VN-01 X 73069431 73069431 C A XIST RNA 0.20 TCGA-95-A4VN-01 X 77225092 77225092 G T PGAM4 Missense_Mutation p.T15K 0.07 tolerated(0.19) benign(0.008) TCGA-95-A4VN-01 X 79962989 79962989 A G BRWD3 Missense_Mutation p.V830A 0.09 tolerated(0.73) benign(0.005) TCGA-95-A4VN-01 X 82764096 82764096 G T POU3F4 Missense_Mutation p.W255L 0.09 deleterious(0) probably_damaging(1) TCGA-95-A4VN-01 X 91133801 91133801 G T PCDH11X Missense_Mutation p.W854C 0.20 deleterious(0) probably_damaging(0.999) TCGA-95-A4VP-01 10 101835692 101835692 G T CPN1 Missense_Mutation p.D132E 0.26 deleterious(0) probably_damaging(1) TCGA-95-A4VP-01 10 134622002 134622002 C T TTC40 Missense_Mutation p.G2691S 0.10 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-95-A4VP-01 10 135203109 135203110 - CA PAOX Frame_Shift_Ins p.A418Tfs*109 0.13 TCGA-95-A4VP-01 10 18874951 18874951 C A NSUN6 Silent p.G283G 0.11 TCGA-95-A4VP-01 10 6262820 6262820 G T PFKFB3 Missense_Mutation p.G275C 0.24 probably_damaging(1) TCGA-95-A4VP-01 10 87489353 87489353 C A GRID1 Nonsense_Mutation p.E418* 0.30 TCGA-95-A4VP-01 10 89311973 89311973 G T MINPP1 Missense_Mutation p.R401L 0.24 deleterious(0) probably_damaging(0.996) TCGA-95-A4VP-01 11 103780324 103780324 A T PDGFD 3'UTR 0.44 TCGA-95-A4VP-01 11 108205764 108205766 AGG - ATM In_Frame_Del p.G2695del 0.34 TCGA-95-A4VP-01 11 113644388 113644388 T C ZW10 Translation_Start_Site p.M1? 0.40 deleterious(0) probably_damaging(0.997) TCGA-95-A4VP-01 11 117253625 117253625 C T CEP164 Missense_Mutation p.A564V 0.17 tolerated(0.33) benign(0.009) TCGA-95-A4VP-01 11 128680406 128680406 C T FLI1 Silent p.S294S 0.24 TCGA-95-A4VP-01 11 1629605 1629605 G C KRTAP5-3 Missense_Mutation p.S4C 0.32 deleterious_low_confidence(0.01) unknown(0) TCGA-95-A4VP-01 11 19735320 19735320 G T NAV2 Missense_Mutation p.V27L 0.14 tolerated_low_confidence(0.61) benign(0.17) TCGA-95-A4VP-01 11 24998151 24998151 T A LUZP2 Silent p.T179T 0.36 TCGA-95-A4VP-01 11 55062927 55062927 C T TRIM51HP Intron 0.31 TCGA-95-A4VP-01 11 55405996 55405996 C A OR4P4 Missense_Mutation p.Q55K 0.32 deleterious(0.01) benign(0.009) TCGA-95-A4VP-01 11 6942931 6942931 T G OR2D3 Silent p.S233S 0.08 TCGA-95-A4VP-01 11 7335118 7335118 G T SYT9 Missense_Mutation p.L330F 0.28 tolerated(0.71) benign(0.254) TCGA-95-A4VP-01 11 99715952 99715952 G T CNTN5 Missense_Mutation p.V179L 0.36 tolerated(0.42) benign(0) TCGA-95-A4VP-01 12 112638514 112638514 G T HECTD4 Missense_Mutation p.P2686H 0.09 probably_damaging(1) TCGA-95-A4VP-01 12 120995377 120995377 G T RNF10 Missense_Mutation p.V287F 0.11 tolerated(0.25) benign(0.006) TCGA-95-A4VP-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.29 deleterious(0) possibly_damaging(0.479) TCGA-95-A4VP-01 12 29639253 29639253 T C OVCH1 Silent p.K307K 0.12 TCGA-95-A4VP-01 12 50472251 50472251 G T ASIC1 Missense_Mutation p.M295I 0.21 tolerated(0.36) benign(0.002) TCGA-95-A4VP-01 12 53342925 53342925 C T KRT18 5'UTR 0.05 TCGA-95-A4VP-01 12 6887564 6887564 C G LAG3 3'UTR 0.10 TCGA-95-A4VP-01 12 69652539 69652539 A G CPSF6 Silent p.P288P 0.11 TCGA-95-A4VP-01 12 71526483 71526483 A T TSPAN8 Missense_Mutation p.V189D 0.12 deleterious(0) probably_damaging(0.977) TCGA-95-A4VP-01 13 23905025 23905025 C A SACS Missense_Mutation p.R4330S 0.15 probably_damaging(0.977) TCGA-95-A4VP-01 13 52952174 52952174 T C THSD1 Missense_Mutation p.H644R 0.08 tolerated(0.16) benign(0.239) TCGA-95-A4VP-01 14 101492380 101492380 C A MIR758 RNA 0.13 TCGA-95-A4VP-01 14 21542977 21542977 A T ARHGEF40 Missense_Mutation p.Q363L 0.12 tolerated(0.06) possibly_damaging(0.885) TCGA-95-A4VP-01 14 22989454 22989454 C A TRAJ23 Missense_Mutation p.P21H 0.39 unknown(0) TCGA-95-A4VP-01 14 36302283 36302283 A C BRMS1L Missense_Mutation p.E111D 0.07 tolerated(0.32) benign(0.02) TCGA-95-A4VP-01 14 39645282 39645282 G A PNN Silent p.R38R 0.64 TCGA-95-A4VP-01 14 53211592 53211592 G T STYX Missense_Mutation p.R27L 0.11 deleterious(0) probably_damaging(0.992) TCGA-95-A4VP-01 15 31222863 31222863 C A FAN1 Missense_Mutation p.R969S 0.15 tolerated(0.26) benign(0.391) TCGA-95-A4VP-01 15 33954955 33954955 G T RYR3 Missense_Mutation p.D1742Y 0.14 probably_damaging(0.95) TCGA-95-A4VP-01 15 42166137 42166137 T C SPTBN5 Missense_Mutation p.E1599G 0.13 probably_damaging(0.956) TCGA-95-A4VP-01 15 71125456 71125456 C A LARP6 Splice_Site p.X138_splice 0.07 TCGA-95-A4VP-01 15 77473170 77473170 C A PEAK1 Missense_Mutation p.G367W 0.11 deleterious(0) possibly_damaging(0.779) TCGA-95-A4VP-01 16 15790651 15790651 G A NDE1 Missense_Mutation p.S294N 0.12 tolerated(0.39) benign(0.097) TCGA-95-A4VP-01 16 2025196 2025196 G A TBL3 Missense_Mutation p.R215H 0.06 deleterious(0) probably_damaging(0.999) TCGA-95-A4VP-01 16 20329558 20329558 G T GP2 Missense_Mutation p.T404N 0.28 deleterious(0) probably_damaging(1) TCGA-95-A4VP-01 16 20386184 20386184 C G PDILT Missense_Mutation p.R214P 0.06 tolerated(0.05) probably_damaging(0.952) TCGA-95-A4VP-01 16 70905944 70905944 G T HYDIN Missense_Mutation p.P3696Q 0.13 probably_damaging(0.972) TCGA-95-A4VP-01 16 77353903 77353903 C T ADAMTS18 Missense_Mutation p.R792Q 0.07 deleterious(0) probably_damaging(0.993) TCGA-95-A4VP-01 17 10439904 10439904 G T MYH2 Silent p.A639A 0.12 TCGA-95-A4VP-01 17 10439905 10439905 G T MYH2 Missense_Mutation p.A639D 0.10 tolerated(0.42) benign(0.034) TCGA-95-A4VP-01 17 12666767 12666767 A T MYOCD Missense_Mutation p.S923C 0.19 deleterious(0.01) probably_damaging(0.987) TCGA-95-A4VP-01 17 19555090 19555090 A G ALDH3A2 Silent p.A128A 0.09 TCGA-95-A4VP-01 17 29159372 29159372 G C ATAD5 Missense_Mutation p.G3R 0.18 deleterious(0) probably_damaging(1) TCGA-95-A4VP-01 17 37822127 37822127 C T TCAP Missense_Mutation p.P90L 0.26 deleterious(0) possibly_damaging(0.768) TCGA-95-A4VP-01 17 39580583 39580583 G A KRT37 Missense_Mutation p.P65S 0.12 tolerated(0.15) possibly_damaging(0.776) TCGA-95-A4VP-01 17 4851757 4851757 C A PFN1 5'UTR 0.38 TCGA-95-A4VP-01 17 51900904 51900904 C A KIF2B Silent p.I170I 0.10 TCGA-95-A4VP-01 17 7187978 7187978 C G SLC2A4 Missense_Mutation p.S301C 0.09 deleterious(0.01) possibly_damaging(0.562) TCGA-95-A4VP-01 17 72942915 72942915 A T OTOP3 Missense_Mutation p.H322L 0.15 deleterious(0) possibly_damaging(0.762) TCGA-95-A4VP-01 17 76116728 76116728 C T TMC6 Intron 0.06 TCGA-95-A4VP-01 17 7663255 7663255 G A DNAH2 Silent p.V928V 0.14 TCGA-95-A4VP-01 17 78079567 78079567 G T GAA Missense_Mutation p.R189M 0.10 deleterious(0.04) benign(0.077) TCGA-95-A4VP-01 17 80684397 80684397 G A FN3KRP Silent p.R170R 0.09 TCGA-95-A4VP-01 18 30091692 30091693 - A WBP11P1 RNA 0.31 TCGA-95-A4VP-01 18 34854427 34854427 G C CELF4 Intron 0.15 TCGA-95-A4VP-01 18 55144008 55144008 C A ONECUT2 3'UTR 0.32 TCGA-95-A4VP-01 19 1220487 1220487 G C STK11 Missense_Mutation p.D194H 0.33 deleterious(0) probably_damaging(1) TCGA-95-A4VP-01 19 37721317 37721317 G A ZNF383 5'UTR 0.15 TCGA-95-A4VP-01 19 4310486 4310486 C A FSD1 Missense_Mutation p.P128H 0.29 deleterious(0) probably_damaging(0.995) TCGA-95-A4VP-01 19 55451367 55451367 C A NLRP7 Nonsense_Mutation p.E274* 0.12 TCGA-95-A4VP-01 19 55452989 55452989 C A NLRP7 Missense_Mutation p.A31S 0.16 tolerated(0.77) benign(0.048) TCGA-95-A4VP-01 19 58905907 58905907 G C RPS5 Missense_Mutation p.R164P 0.08 deleterious(0) benign(0.04) TCGA-95-A4VP-01 19 6591001 6591001 C G CD70 Missense_Mutation p.G5R 0.08 tolerated(0.12) probably_damaging(0.979) TCGA-95-A4VP-01 1 110709767 110709767 C A SLC6A17 Silent p.A72A 0.14 TCGA-95-A4VP-01 1 11254970 11254970 G A ANGPTL7 Missense_Mutation p.G311S 0.24 deleterious(0) probably_damaging(0.998) TCGA-95-A4VP-01 1 147092411 147092411 T C BCL9 Missense_Mutation p.M817T 0.19 deleterious(0) possibly_damaging(0.769) TCGA-95-A4VP-01 1 152276069 152276069 T C FLG Missense_Mutation p.R3765G 0.04 unknown(0) TCGA-95-A4VP-01 1 152282954 152282954 G A FLG Missense_Mutation p.H1470Y 0.18 benign(0.152) TCGA-95-A4VP-01 1 152285017 152285017 C A FLG Missense_Mutation p.R782L 0.11 possibly_damaging(0.801) TCGA-95-A4VP-01 1 159283532 159283532 C G OR10J3 Silent p.G306G 0.20 TCGA-95-A4VP-01 1 160000118 160000118 C T PIGM 3'UTR 0.32 TCGA-95-A4VP-01 1 170705269 170705269 T A PRRX1 Missense_Mutation p.L227Q 0.20 deleterious(0) probably_damaging(0.995) TCGA-95-A4VP-01 1 175052929 175052929 G C TNN Missense_Mutation p.E364D 0.15 tolerated(0.08) possibly_damaging(0.874) TCGA-95-A4VP-01 1 178411986 178411986 C - RASAL2 Frame_Shift_Del p.L369Ffs*27 0.16 TCGA-95-A4VP-01 1 186415579 186415579 T A PDC Silent p.S64S 0.23 TCGA-95-A4VP-01 1 228464187 228464187 T G OBSCN Missense_Mutation p.V2461G 0.14 probably_damaging(0.975) TCGA-95-A4VP-01 1 230371806 230371806 G T GALNT2 Missense_Mutation p.V141L 0.21 deleterious(0) benign(0.221) TCGA-95-A4VP-01 1 235599077 235599077 A T TBCE Missense_Mutation p.Q252L 0.22 deleterious(0.01) benign(0.031) TCGA-95-A4VP-01 1 237982468 237982468 G T RYR2 Missense_Mutation p.V4856F 0.18 probably_damaging(0.942) TCGA-95-A4VP-01 1 240370728 240370728 C A FMN2 Silent p.G872G 0.24 TCGA-95-A4VP-01 1 248202418 248202418 G T OR2L2 Missense_Mutation p.M283I 0.19 deleterious(0.01) benign(0.016) TCGA-95-A4VP-01 1 6194862 6194862 G T CHD5 Silent p.G976G 0.28 TCGA-95-A4VP-01 1 65157012 65157012 G T CACHD1 Missense_Mutation p.S1147I 0.20 deleterious(0) probably_damaging(0.996) TCGA-95-A4VP-01 1 68948349 68948349 T A DEPDC1 Missense_Mutation p.Q381L 0.26 tolerated(0.1) benign(0.287) TCGA-95-A4VP-01 20 1902216 1902216 C A SIRPA Missense_Mutation p.S204R 0.20 tolerated(0.05) possibly_damaging(0.727) TCGA-95-A4VP-01 20 25205927 25205927 G T ENTPD6 Missense_Mutation p.G444C 0.17 deleterious(0) probably_damaging(1) TCGA-95-A4VP-01 20 36979231 36979231 G C LBP Missense_Mutation p.C86S 0.08 deleterious(0.01) possibly_damaging(0.794) TCGA-95-A4VP-01 20 36995460 36995460 C T LBP Silent p.P323P 0.04 TCGA-95-A4VP-01 21 31709413 31709413 C T KRTAP27-1 Missense_Mutation p.V192I 0.33 tolerated(0.11) benign(0) TCGA-95-A4VP-01 21 44839252 44839252 A C SIK1 Missense_Mutation p.L409R 0.13 tolerated(0.3) possibly_damaging(0.694) TCGA-95-A4VP-01 22 51019954 51019954 C A CHKB Missense_Mutation p.R159L 0.08 tolerated(0.14) benign(0.164) TCGA-95-A4VP-01 2 113500348 113500348 T A CKAP2L Splice_Site p.X587_splice 0.38 TCGA-95-A4VP-01 2 152417530 152417530 A G NEB Silent p.N6398N 0.12 TCGA-95-A4VP-01 2 165948804 165948804 C G SCN3A Missense_Mutation p.W1589C 0.47 deleterious(0) probably_damaging(0.999) TCGA-95-A4VP-01 2 170885859 170885859 A T UBR3 Missense_Mutation p.Q1486L 0.35 tolerated(0.19) probably_damaging(0.969) TCGA-95-A4VP-01 2 17830765 17830765 A T VSNL1 Missense_Mutation p.E84V 0.09 deleterious(0) probably_damaging(0.985) TCGA-95-A4VP-01 2 224831597 224831597 C T MRPL44 Missense_Mutation p.A282V 0.37 deleterious(0) probably_damaging(0.925) TCGA-95-A4VP-01 2 225662578 225662578 A T DOCK10 Missense_Mutation p.F1539I 0.05 deleterious(0) probably_damaging(0.997) TCGA-95-A4VP-01 2 234545287 234545287 C T UGT1A10 Missense_Mutation p.T40I 0.05 deleterious(0) probably_damaging(0.948) TCGA-95-A4VP-01 2 74043390 74043390 G T C2orf78 Missense_Mutation p.E680D 0.28 tolerated(0.21) benign(0.034) TCGA-95-A4VP-01 2 79253886 79253886 A T REG3G Nonsense_Mutation p.K42* 0.47 TCGA-95-A4VP-01 3 10050266 10050266 T A AC022007.5 RNA 0.35 TCGA-95-A4VP-01 3 196733532 196733532 G T MFI2 Missense_Mutation p.A609D 0.28 deleterious(0) probably_damaging(0.992) TCGA-95-A4VP-01 3 26751686 26751686 T A LRRC3B Missense_Mutation p.S175T 0.30 deleterious(0.01) possibly_damaging(0.604) TCGA-95-A4VP-01 3 37035048 37035048 G T MLH1 Missense_Mutation p.V4L 0.30 tolerated_low_confidence(0.24) benign(0.006) TCGA-95-A4VP-01 4 100512481 100512481 G T MTTP Silent p.A197A 0.10 TCGA-95-A4VP-01 4 109861739 109861739 C A COL25A1 Missense_Mutation p.G210W 0.20 deleterious(0) unknown(0) TCGA-95-A4VP-01 4 110758732 110758732 G T RRH Missense_Mutation p.D231Y 0.19 tolerated(0.06) benign(0.202) TCGA-95-A4VP-01 4 177138030 177138030 C T ASB5 Silent p.L267L 0.10 TCGA-95-A4VP-01 4 56448363 56448363 A G PDCL2 Silent p.D16D 0.11 TCGA-95-A4VP-01 5 133895545 133895545 C T JADE2 Missense_Mutation p.P113S 0.26 tolerated(0.41) benign(0.009) TCGA-95-A4VP-01 5 13735953 13735953 C A DNAH5 Silent p.L3848L 0.12 TCGA-95-A4VP-01 5 13823396 13823396 T C DNAH5 Silent p.E2221E 0.12 TCGA-95-A4VP-01 5 140389529 140389529 C G PCDHAC1 3'UTR 0.30 TCGA-95-A4VP-01 5 140516312 140516312 C T PCDHB5 Silent p.T432T 0.24 TCGA-95-A4VP-01 5 140574289 140574289 G T PCDHB10 Missense_Mutation p.A722S 0.23 tolerated_low_confidence(0.12) benign(0.224) TCGA-95-A4VP-01 5 180219587 180219587 G A MGAT1 Missense_Mutation p.R129W 0.13 probably_damaging(1) TCGA-95-A4VP-01 5 33963911 33963911 G T SLC45A2 Missense_Mutation p.P258H 0.14 tolerated(0.3) benign(0.008) TCGA-95-A4VP-01 5 45261997 45261997 C T HCN1 3'UTR 0.13 TCGA-95-A4VP-01 5 79029022 79029022 A G CMYA5 Silent p.S1478S 0.18 TCGA-95-A4VP-01 5 82816020 82816020 C A VCAN Missense_Mutation p.T632K 0.19 deleterious(0.01) benign(0.428) TCGA-95-A4VP-01 6 112471818 112471818 C A LAMA4 Missense_Mutation p.A690S 0.17 tolerated(0.25) benign(0.043) TCGA-95-A4VP-01 6 139165567 139165567 G A ECT2L Missense_Mutation p.R205Q 0.15 deleterious(0) probably_damaging(0.984) TCGA-95-A4VP-01 6 152722347 152722347 A T SYNE1 Missense_Mutation p.W2319R 0.12 possibly_damaging(0.578) TCGA-95-A4VP-01 6 31837024 31837024 T C SLC44A4 Missense_Mutation p.T381A 0.23 deleterious(0) benign(0.072) TCGA-95-A4VP-01 6 32975906 32975906 G A HLA-DOA Missense_Mutation p.P72L 0.15 deleterious(0.01) probably_damaging(1) TCGA-95-A4VP-01 6 35436198 35436198 C A RPL10A 5'UTR 0.25 TCGA-95-A4VP-01 6 41309571 41309571 T C NCR2 Missense_Mutation p.L145P 0.19 tolerated(0.14) benign(0.016) TCGA-95-A4VP-01 7 150558107 150558107 G T AOC1 Missense_Mutation p.G689V 0.33 deleterious(0) possibly_damaging(0.901) TCGA-95-A4VP-01 7 150707257 150707257 G A NOS3 Missense_Mutation p.R856H 0.06 tolerated(0.46) benign(0.003) TCGA-95-A4VP-01 7 47869697 47869697 A G PKD1L1 Missense_Mutation p.W2167R 0.46 deleterious(0) probably_damaging(0.986) TCGA-95-A4VP-01 7 88963524 88963524 A C ZNF804B Silent p.R410R 0.27 TCGA-95-A4VP-01 8 103306336 103306336 T A UBR5 Missense_Mutation p.D1399V 0.13 deleterious(0) probably_damaging(0.994) TCGA-95-A4VP-01 8 10755661 10755661 C T XKR6 Missense_Mutation p.R576H 0.07 tolerated(0.08) probably_damaging(0.945) TCGA-95-A4VP-01 8 120865345 120865345 C - DSCC1 Frame_Shift_Del p.C98Lfs*7 0.25 TCGA-95-A4VP-01 8 143381910 143381910 C T TSNARE1 Silent p.P409P 0.08 TCGA-95-A4VP-01 8 27729430 27729430 G C SCARA5 3'UTR 0.06 TCGA-95-A4VP-01 8 35624506 35624506 C A UNC5D Silent p.T800T 0.43 TCGA-95-A4VP-01 8 42563858 42563858 A T CHRNB3 Splice_Site p.X18_splice 0.23 TCGA-95-A4VP-01 8 61769402 61769402 A G CHD7 Silent p.G2521G 0.28 TCGA-95-A4VP-01 8 68931840 68931840 C T PREX2 Silent p.V90V 0.06 TCGA-95-A4VP-01 8 77764983 77764983 C T ZFHX4 Silent p.N1942N 0.18 TCGA-95-A4VP-01 8 77766941 77766941 G A ZFHX4 Missense_Mutation p.G2595E 0.31 probably_damaging(0.999) TCGA-95-A4VP-01 8 77767911 77767911 C A ZFHX4 Silent p.P2918P 0.28 TCGA-95-A4VP-01 8 77767912 77767912 T A ZFHX4 Missense_Mutation p.F2919I 0.29 probably_damaging(0.974) TCGA-95-A4VP-01 8 80553737 80553737 C A STMN2 Silent p.S80S 0.27 TCGA-95-A4VP-01 8 88885201 88885201 G T DCAF4L2 Silent p.G333G 0.28 TCGA-95-A4VP-01 9 114134802 114134802 C T KIAA0368 Missense_Mutation p.A1657T 0.11 tolerated(0.33) benign(0.051) TCGA-95-A4VP-01 9 135139899 135139899 T A SETX Silent p.I2587I 0.19 TCGA-95-A4VP-01 9 140953545 140953545 C A CACNA1B Silent p.P1496P 0.17 TCGA-95-A4VP-01 9 84530461 84530461 G C SPATA31D5P RNA 0.15 TCGA-95-A4VP-01 X 153496075 153496075 G T OPN1MW2 Missense_Mutation p.R268L 0.35 deleterious(0) probably_damaging(0.993) TCGA-95-A4VP-01 X 153608673 153608673 G T EMD Missense_Mutation p.R115S 0.19 tolerated(0.25) benign(0.014) TCGA-95-A4VP-01 X 3248362 3248362 G A MXRA5 Missense_Mutation p.H136Y 0.22 deleterious(0) probably_damaging(0.978) TCGA-95-A4VP-01 X 46466380 46466380 G A SLC9A7 3'UTR 0.15 TCGA-95-A4VP-01 X 70782820 70782820 C T OGT Missense_Mutation p.H701Y 0.26 tolerated(0.06) benign(0.146) TCGA-97-7546-01 10 102762640 102762640 A C LZTS2 Silent p.A115A 0.16 TCGA-97-7546-01 10 103190200 103190200 A T BTRC Silent p.T49T 0.33 TCGA-97-7546-01 10 1034399 1034399 C T GTPBP4 5'UTR 0.26 TCGA-97-7546-01 10 108924037 108924037 C T SORCS1 Missense_Mutation p.G83E 0.46 tolerated_low_confidence(0.5) probably_damaging(0.988) TCGA-97-7546-01 10 113933468 113933468 C A GPAM Silent p.P183P 0.19 TCGA-97-7546-01 10 25888238 25888238 C A GPR158 3'UTR 0.42 TCGA-97-7546-01 10 30653638 30653638 C A AL161651.1 3'Flank 0.29 TCGA-97-7546-01 10 49450362 49450362 G A FRMPD2 Silent p.L137L 0.24 TCGA-97-7546-01 10 73377139 73377139 G T CDH23 Missense_Mutation p.D375Y 0.29 deleterious(0) probably_damaging(1) TCGA-97-7546-01 10 7608307 7608307 C A ITIH5 Missense_Mutation p.R738L 0.18 deleterious(0) probably_damaging(1) TCGA-97-7546-01 10 7627984 7627984 G T ITIH5 Missense_Mutation p.R330S 0.14 tolerated(0.06) benign(0.246) TCGA-97-7546-01 10 94813 94813 C A TUBB8 Missense_Mutation p.A33S 0.36 tolerated_low_confidence(0.41) benign(0.014) TCGA-97-7546-01 11 106849374 106849374 C T GUCY1A2 Missense_Mutation p.G153E 0.24 tolerated(0.89) benign(0.015) TCGA-97-7546-01 11 106849452 106849452 T A GUCY1A2 Missense_Mutation p.E127V 0.25 tolerated(0.06) benign(0.092) TCGA-97-7546-01 11 122653759 122653759 A T UBASH3B Splice_Site p.X201_splice 0.17 TCGA-97-7546-01 11 128781086 128781086 G T KCNJ5 Intron 0.33 TCGA-97-7546-01 11 14479392 14479392 G A COPB1 Missense_Mutation p.S947L 0.20 tolerated(0.64) benign(0.166) TCGA-97-7546-01 11 40136549 40136549 C A LRRC4C Missense_Mutation p.V432F 0.23 deleterious(0) benign(0.21) TCGA-97-7546-01 11 40136878 40136878 G T LRRC4C Nonsense_Mutation p.S322* 0.25 TCGA-97-7546-01 11 4411492 4411492 C A TRIM21 Missense_Mutation p.V50F 0.18 tolerated(0.45) possibly_damaging(0.469) TCGA-97-7546-01 11 4470638 4470638 A G OR52K2 Silent p.E23E 0.38 TCGA-97-7546-01 11 46726982 46726982 C T ZNF408 Missense_Mutation p.P578S 0.14 deleterious(0) probably_damaging(0.999) TCGA-97-7546-01 11 5068235 5068235 C G OR52J3 Silent p.P160P 0.21 TCGA-97-7546-01 11 5345063 5345063 C A OR51B2 Silent p.L155L 0.20 TCGA-97-7546-01 11 540786 540786 G T LRRC56 Missense_Mutation p.Q34H 0.28 tolerated(0.12) possibly_damaging(0.885) TCGA-97-7546-01 11 55340160 55340160 C G OR4C16 Missense_Mutation p.A186G 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-97-7546-01 11 57003266 57003266 C A APLNR 3'UTR 0.16 TCGA-97-7546-01 11 58207463 58207463 G A OR5B12 Silent p.H54H 0.18 TCGA-97-7546-01 11 61981325 61981325 T C SCGB2A1 3'UTR 0.31 TCGA-97-7546-01 11 64434943 64434943 G T NRXN2 Missense_Mutation p.P526H 0.28 deleterious(0) benign(0.07) TCGA-97-7546-01 11 65266463 65266463 G T MALAT1 RNA 0.19 TCGA-97-7546-01 11 6898520 6898520 G T OR10A4 Silent p.L214L 0.21 TCGA-97-7546-01 11 88300451 88300451 G T GRM5 Silent p.I800I 0.31 TCGA-97-7546-01 11 89531374 89531374 C G TRIM49 Missense_Mutation p.S428T 0.24 deleterious(0.02) possibly_damaging(0.589) TCGA-97-7546-01 12 100904904 100904904 C T NR1H4 Missense_Mutation p.T153I 0.13 deleterious(0) probably_damaging(0.999) TCGA-97-7546-01 12 121093916 121093916 C A CABP1 Intron 0.13 TCGA-97-7546-01 12 125834873 125834873 G A TMEM132B Missense_Mutation p.D310N 0.10 deleterious(0.02) benign(0.046) TCGA-97-7546-01 12 133196156 133196156 C A P2RX2 Missense_Mutation p.P102H 0.16 deleterious(0) probably_damaging(0.991) TCGA-97-7546-01 12 15095548 15095548 A G ARHGDIB Missense_Mutation p.Y172H 0.13 deleterious(0) probably_damaging(1) TCGA-97-7546-01 12 18237467 18237467 T A RERGL Missense_Mutation p.T107S 0.39 tolerated(0.71) benign(0.007) TCGA-97-7546-01 12 2614017 2614017 G A CACNA1C Missense_Mutation p.A375T 0.14 deleterious(0.01) probably_damaging(0.929) TCGA-97-7546-01 12 29630297 29630297 G - OVCH1 Frame_Shift_Del p.T408Mfs*19 0.10 TCGA-97-7546-01 12 42853627 42853627 T C PRICKLE1 Missense_Mutation p.N827S 0.40 deleterious(0) probably_damaging(0.996) TCGA-97-7546-01 12 44915846 44915846 A G NELL2 Silent p.N754N 0.10 TCGA-97-7546-01 12 4919702 4919702 G T KCNA6 Missense_Mutation p.E165D 0.28 deleterious(0) probably_damaging(0.986) TCGA-97-7546-01 12 52162673 52162673 C T SCN8A Missense_Mutation p.L976F 0.14 deleterious(0) probably_damaging(1) TCGA-97-7546-01 12 58217755 58217755 T A CTDSP2 Missense_Mutation p.R208W 0.11 deleterious(0) probably_damaging(1) TCGA-97-7546-01 12 63974554 63974554 C A DPY19L2 Silent p.V596V 0.20 TCGA-97-7546-01 12 69233396 69233396 G C MDM2 Missense_Mutation p.E421Q 0.35 tolerated(0.06) possibly_damaging(0.453) TCGA-97-7546-01 12 70072571 70072571 G T BEST3 Missense_Mutation p.A195D 0.10 deleterious(0) probably_damaging(0.997) TCGA-97-7546-01 12 94649046 94649046 T C PLXNC1 Missense_Mutation p.F1021L 0.17 deleterious(0) probably_damaging(0.999) TCGA-97-7546-01 13 101726011 101726011 C A NALCN Silent p.S1374S 0.17 TCGA-97-7546-01 13 113897418 113897418 A G CUL4A Missense_Mutation p.K391R 0.36 tolerated(0.1) benign(0.161) TCGA-97-7546-01 13 43788070 43788070 A G ENOX1 3'UTR 0.14 TCGA-97-7546-01 14 101455516 101455516 G T SNORD114-28 RNA 0.35 TCGA-97-7546-01 14 22133880 22133880 C A OR4E2 Missense_Mutation p.T195K 0.12 deleterious(0) probably_damaging(0.917) TCGA-97-7546-01 14 31085815 31085815 C A G2E3 3'UTR 0.42 TCGA-97-7546-01 14 34269356 34269356 C A NPAS3 Silent p.R615R 0.18 TCGA-97-7546-01 14 42356189 42356189 G A LRFN5 Missense_Mutation p.G121S 0.15 deleterious(0) probably_damaging(1) TCGA-97-7546-01 14 54955665 54955665 G A GMFB 5'UTR 0.37 TCGA-97-7546-01 14 59789744 59789744 C G DAAM1 Missense_Mutation p.S192C 0.19 deleterious(0) unknown(0) TCGA-97-7546-01 14 81743256 81743256 T A STON2 Missense_Mutation p.D800V 0.35 deleterious(0) probably_damaging(0.999) TCGA-97-7546-01 14 91007859 91007859 C A TTC7B Silent p.S795S 0.35 TCGA-97-7546-01 15 101550913 101550913 A G LRRK1 Silent p.E384E 0.09 TCGA-97-7546-01 15 32928865 32928865 G T ARHGAP11A Nonsense_Mutation p.E631* 0.38 TCGA-97-7546-01 15 35084623 35084623 G T ACTC1 Missense_Mutation p.S201Y 0.19 deleterious_low_confidence(0.04) probably_damaging(0.915) TCGA-97-7546-01 15 63991040 63991040 A C HERC1 Missense_Mutation p.F1598V 0.31 benign(0.081) TCGA-97-7546-01 15 74326883 74326883 A G PML Intron 0.23 TCGA-97-7546-01 15 78474319 78474319 C A ACSBG1 Missense_Mutation p.A355S 0.16 deleterious(0.02) benign(0.332) TCGA-97-7546-01 15 85488008 85488008 G A SLC28A1 Missense_Mutation p.G595E 0.21 tolerated(0.24) benign(0.024) TCGA-97-7546-01 16 10274282 10274282 G T GRIN2A 5'UTR 0.63 TCGA-97-7546-01 16 15808797 15808797 G C MYH11 Missense_Mutation p.R1926G 0.50 probably_damaging(0.999) TCGA-97-7546-01 16 19126972 19126972 C T ITPRIPL2 Nonsense_Mutation p.Q397* 0.21 TCGA-97-7546-01 16 2164249 2164249 C A PKD1 Silent p.R925R 0.10 TCGA-97-7546-01 16 2328346 2328346 C A ABCA3 Missense_Mutation p.W1554L 0.22 deleterious(0) probably_damaging(0.977) TCGA-97-7546-01 16 2578487 2578487 G T AMDHD2 Missense_Mutation p.L299F 0.12 tolerated(0.09) possibly_damaging(0.614) TCGA-97-7546-01 16 48142350 48142350 C T ABCC12 Splice_Site p.X791_splice 0.25 TCGA-97-7546-01 17 1183251 1183251 C A TUSC5 5'UTR 0.13 TCGA-97-7546-01 17 32598209 32598209 A C CCL7 Missense_Mutation p.K41Q 0.38 tolerated(0.11) benign(0.3) TCGA-97-7546-01 17 38240933 38240933 G T THRA Missense_Mutation p.K147N 0.46 deleterious(0.05) probably_damaging(0.994) TCGA-97-7546-01 17 38922683 38922683 T C KRT26 3'UTR 0.29 TCGA-97-7546-01 17 38948771 38948771 G A KRT28 Missense_Mutation p.R435C 0.29 tolerated(0.18) benign(0.022) TCGA-97-7546-01 17 44952705 44952705 C T WNT9B Silent p.D191D 0.18 TCGA-97-7546-01 17 4607241 4607241 C A PELP1 Missense_Mutation p.V56L 0.17 benign(0.444) TCGA-97-7546-01 17 56395678 56395678 G A BZRAP1 Missense_Mutation p.S612F 0.14 deleterious(0) possibly_damaging(0.897) TCGA-97-7546-01 17 72955115 72955115 C A HID1 Missense_Mutation p.R347L 0.16 deleterious(0.01) benign(0.131) TCGA-97-7546-01 17 74533500 74533500 C A CYGB Missense_Mutation p.G42V 0.10 deleterious(0) probably_damaging(1) TCGA-97-7546-01 17 76547656 76547656 C T DNAH17 Silent p.K784K 0.23 TCGA-97-7546-01 17 76547658 76547658 T A DNAH17 Nonsense_Mutation p.K784* 0.22 TCGA-97-7546-01 17 7721353 7721353 C T DNAH2 Silent p.N3442N 0.11 TCGA-97-7546-01 17 78320969 78320969 G A RNF213 Missense_Mutation p.R2945H 0.20 benign(0.136) TCGA-97-7546-01 17 79287590 79287590 T G TMEM105 Missense_Mutation p.H84P 0.13 deleterious_low_confidence(0.01) benign(0.013) TCGA-97-7546-01 18 13087146 13087146 G T CEP192 Missense_Mutation p.R1916L 0.22 deleterious(0) probably_damaging(0.937) TCGA-97-7546-01 18 21109655 21109655 C T NPC1 3'Flank 0.12 TCGA-97-7546-01 18 31325198 31325198 G T ASXL3 Missense_Mutation p.V1796F 0.38 benign(0.343) TCGA-97-7546-01 18 31803106 31803106 G - NOL4 Frame_Shift_Del p.Q38Sfs*54 0.19 TCGA-97-7546-01 18 67613982 67613982 C A CD226 Missense_Mutation p.V124L 0.20 deleterious(0.01) probably_damaging(0.927) TCGA-97-7546-01 19 10114363 10114363 G A COL5A3 Missense_Mutation p.R243C 0.19 unknown(0) TCGA-97-7546-01 19 12501395 12501395 T A ZNF799 Missense_Mutation p.H606L 0.16 deleterious(0) probably_damaging(0.994) TCGA-97-7546-01 19 21300752 21300752 G C ZNF714 Missense_Mutation p.E428Q 0.35 deleterious(0.02) possibly_damaging(0.588) TCGA-97-7546-01 19 34712605 34712605 G C LSM14A Missense_Mutation p.G444R 0.26 deleterious_low_confidence(0.02) probably_damaging(0.929) TCGA-97-7546-01 19 3979429 3979429 G A EEF2 Silent p.I537I 0.30 TCGA-97-7546-01 19 40711891 40711891 G T MAP3K10 Missense_Mutation p.R421L 0.12 deleterious(0.02) benign(0.32) TCGA-97-7546-01 19 41727831 41727831 C T AXL Silent p.A152A 0.12 TCGA-97-7546-01 19 422268 422268 T C SHC2 Missense_Mutation p.M500V 0.17 deleterious(0) benign(0.102) TCGA-97-7546-01 19 42585458 42585458 G T ZNF574 3'UTR 0.21 TCGA-97-7546-01 19 51297178 51297178 C G ACPT Missense_Mutation p.S271C 0.20 deleterious(0) probably_damaging(0.998) TCGA-97-7546-01 19 51914473 51914473 G T SIGLEC10 Silent p.S658S 0.29 TCGA-97-7546-01 19 52472344 52472344 C T ZNF350 Nonsense_Mutation p.W19* 0.25 TCGA-97-7546-01 19 53013918 53013918 G T ZNF578 Missense_Mutation p.S95I 0.20 tolerated(0.06) possibly_damaging(0.884) TCGA-97-7546-01 19 54849342 54849342 C A LILRA4 Nonsense_Mutation p.G174* 0.07 TCGA-97-7546-01 19 55420680 55420680 C - NCR1 Frame_Shift_Del p.R145Vfs*2 0.17 TCGA-97-7546-01 19 56249718 56249718 T A NLRP9 Missense_Mutation p.D8V 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-97-7546-01 19 57326402 57326402 G C PEG3 Missense_Mutation p.D1136E 0.31 tolerated(0.25) benign(0.081) TCGA-97-7546-01 19 5776215 5776215 G T CATSPERD Missense_Mutation p.R662M 0.23 tolerated(0.06) benign(0.393) TCGA-97-7546-01 19 5776216 5776216 G T CATSPERD Missense_Mutation p.R662S 0.22 tolerated(0.16) possibly_damaging(0.625) TCGA-97-7546-01 19 57867973 57867973 G C ZNF304 Missense_Mutation p.A246P 0.23 tolerated(0.09) benign(0.002) TCGA-97-7546-01 19 58565031 58565031 C T ZSCAN1 Missense_Mutation p.S280L 0.16 tolerated(0.06) benign(0.129) TCGA-97-7546-01 19 6919615 6919615 C T EMR1 Missense_Mutation p.R493C 0.22 deleterious(0.01) possibly_damaging(0.677) TCGA-97-7546-01 19 9047883 9047883 C A MUC16 Missense_Mutation p.V11250F 0.13 benign(0.027) TCGA-97-7546-01 19 9059529 9059529 C A MUC16 Missense_Mutation p.S9306I 0.07 unknown(0) TCGA-97-7546-01 19 9578633 9578633 A T ZNF560 Silent p.T330T 0.24 TCGA-97-7546-01 1 101194697 101194697 C T VCAM1 Silent p.P321P 0.27 TCGA-97-7546-01 1 101704645 101704645 G A S1PR1 Silent p.L35L 0.33 TCGA-97-7546-01 1 104160118 104160118 C A AMY2A Missense_Mutation p.P19Q 0.27 deleterious(0.02) probably_damaging(0.984) TCGA-97-7546-01 1 120491110 120491110 G T NOTCH2 Silent p.G893G 0.12 TCGA-97-7546-01 1 120509106 120509106 T A NOTCH2 Missense_Mutation p.K487I 0.34 deleterious(0.03) probably_damaging(0.951) TCGA-97-7546-01 1 12333079 12333079 C A VPS13D Missense_Mutation p.T708N 0.31 benign(0.046) TCGA-97-7546-01 1 145273189 145273189 C G NOTCH2NL Missense_Mutation p.P15A 0.08 tolerated(0.68) benign(0.003) TCGA-97-7546-01 1 150551692 150551692 C A MCL1 Silent p.A105A 0.38 TCGA-97-7546-01 1 152327770 152327770 G T FLG2 Missense_Mutation p.S831Y 0.28 unknown(0) TCGA-97-7546-01 1 156640547 156640547 C G NES Missense_Mutation p.E1145Q 0.24 tolerated(0.27) benign(0.031) TCGA-97-7546-01 1 156708225 156708225 C A MRPL24 Missense_Mutation p.E63D 0.18 deleterious(0.01) possibly_damaging(0.626) TCGA-97-7546-01 1 157493954 157493954 T C FCRL5 Intron 0.33 TCGA-97-7546-01 1 157508895 157508895 C A FCRL5 Silent p.A461A 0.26 TCGA-97-7546-01 1 158609710 158609710 G C SPTA1 Missense_Mutation p.Q1609E 0.33 tolerated(0.06) probably_damaging(0.986) TCGA-97-7546-01 1 158815391 158815391 G A MNDA Silent p.Q195Q 0.29 TCGA-97-7546-01 1 165179965 165179965 G A LMX1A Nonsense_Mutation p.Q240* 0.23 TCGA-97-7546-01 1 171510393 171510393 G T PRRC2C Missense_Mutation p.R1261L 0.20 unknown(0) TCGA-97-7546-01 1 17296381 17296381 G T CROCC Silent p.L1801L 0.23 TCGA-97-7546-01 1 179523762 179523762 C A AXDND1 3'UTR 0.26 TCGA-97-7546-01 1 192335245 192335245 T - RGS21 Frame_Shift_Del p.L152Cfs*7 0.30 TCGA-97-7546-01 1 192335252 192335252 T G RGS21 Nonstop_Mutation p.*153Gext*3 0.41 TCGA-97-7546-01 1 197091620 197091620 T A ASPM Missense_Mutation p.T1166S 0.23 tolerated(0.07) probably_damaging(0.923) TCGA-97-7546-01 1 197144219 197144219 A G ZBTB41 Missense_Mutation p.C636R 0.28 deleterious(0) probably_damaging(0.999) TCGA-97-7546-01 1 214828619 214828619 G A CENPF Silent p.K2786K 0.17 TCGA-97-7546-01 1 216390770 216390770 G T USH2A Missense_Mutation p.A1039E 0.45 probably_damaging(0.978) TCGA-97-7546-01 1 222700353 222700353 T G HHIPL2 Missense_Mutation p.Y588S 0.39 tolerated(0.29) benign(0.19) TCGA-97-7546-01 1 226453251 226453251 C G LIN9 Missense_Mutation p.E357Q 0.37 tolerated(0.08) benign(0.048) TCGA-97-7546-01 1 228509182 228509182 G T OBSCN Missense_Mutation p.Q5837H 0.25 probably_damaging(0.999) TCGA-97-7546-01 1 229600529 229600529 C A NUP133 Missense_Mutation p.R798L 0.30 tolerated(0.06) probably_damaging(0.982) TCGA-97-7546-01 1 235629009 235629009 T A B3GALNT2 Missense_Mutation p.H262L 0.04 tolerated(0.19) benign(0.003) TCGA-97-7546-01 1 237941996 237941996 G T RYR2 Missense_Mutation p.A3936S 0.29 probably_damaging(0.994) TCGA-97-7546-01 1 238045718 238045718 G A ZP4 3'UTR 0.26 TCGA-97-7546-01 1 238090327 238090327 C A RP11-193H5.1 RNA 0.22 TCGA-97-7546-01 1 247694869 247694869 G T OR2C3 Silent p.G315G 0.36 TCGA-97-7546-01 1 34663381 34663381 G T C1orf94 Silent p.L292L 0.30 TCGA-97-7546-01 1 36752483 36752483 G C THRAP3 Missense_Mutation p.E218Q 0.28 deleterious(0.02) benign(0.277) TCGA-97-7546-01 1 39549881 39549881 C T MACF1 5'UTR 0.10 TCGA-97-7546-01 1 62703954 62703954 G T KANK4 Missense_Mutation p.L995M 0.17 tolerated_low_confidence(0.14) possibly_damaging(0.86) TCGA-97-7546-01 1 68512327 68512327 G A DIRAS3 Silent p.T218T 0.35 TCGA-97-7546-01 1 76397994 76397994 C A ASB17 5'UTR 0.41 TCGA-97-7546-01 1 77094406 77094406 G T ST6GALNAC3 Missense_Mutation p.R278M 0.25 probably_damaging(0.999) TCGA-97-7546-01 1 87025627 87025627 A T CLCA4 Missense_Mutation p.T58S 0.28 tolerated(0.1) benign(0.063) TCGA-97-7546-01 20 17474970 17474970 G T BFSP1 Missense_Mutation p.P583T 0.03 deleterious(0.01) possibly_damaging(0.798) TCGA-97-7546-01 20 24523733 24523733 C A SYNDIG1 5'UTR 0.27 TCGA-97-7546-01 20 36641088 36641088 G T TTI1 Missense_Mutation p.S377R 0.30 deleterious(0) benign(0.091) TCGA-97-7546-01 20 37546959 37546959 G C PPP1R16B Missense_Mutation p.D452H 0.25 deleterious(0) possibly_damaging(0.789) TCGA-97-7546-01 20 40828028 40828028 C A PTPRT Missense_Mutation p.L781F 0.34 tolerated(0.71) benign(0) TCGA-97-7546-01 20 45315870 45315870 C T TP53RK Missense_Mutation p.G95E 0.25 deleterious(0) probably_damaging(0.987) TCGA-97-7546-01 20 60791826 60791826 A T HRH3 Missense_Mutation p.F192I 0.24 deleterious(0) probably_damaging(0.998) TCGA-97-7546-01 20 61956826 61956826 C A COL20A1 Missense_Mutation p.H1110N 0.30 tolerated(0.5) benign(0.021) TCGA-97-7546-01 21 32007602 32007602 A G KRTAP20-2 Missense_Mutation p.Y7C 0.37 unknown(0) TCGA-97-7546-01 21 32537381 32537381 C G TIAM1 Silent p.G963G 0.27 TCGA-97-7546-01 21 41648136 41648137 - T DSCAM Frame_Shift_Ins p.N748Kfs*38 0.22 TCGA-97-7546-01 21 47571592 47571592 C A FTCD Silent p.G172G 0.16 TCGA-97-7546-01 21 47571593 47571593 C A FTCD Missense_Mutation p.G172V 0.16 deleterious(0) probably_damaging(1) TCGA-97-7546-01 22 24483437 24483437 G C CABIN1 Missense_Mutation p.R1099P 0.18 deleterious(0) probably_damaging(0.998) TCGA-97-7546-01 22 24483438 24483438 G T CABIN1 Silent p.R1099R 0.20 TCGA-97-7546-01 22 30737734 30737734 C A SF3A1 Nonsense_Mutation p.E340* 0.26 TCGA-97-7546-01 22 39421324 39421324 G - APOBEC3D Frame_Shift_Del p.A155Pfs*3 0.13 TCGA-97-7546-01 22 40030681 40030681 G T CACNA1I Missense_Mutation p.W231L 0.31 deleterious(0) possibly_damaging(0.776) TCGA-97-7546-01 22 44276639 44276639 G T PNPLA5 3'UTR 0.50 TCGA-97-7546-01 2 120383254 120383254 G T PCDP1 Silent p.S502S 0.24 TCGA-97-7546-01 2 128631402 128631402 T C AMMECR1L Missense_Mutation p.Y136C 0.30 deleterious(0.02) possibly_damaging(0.856) TCGA-97-7546-01 2 158390505 158390505 T A ACVR1C Silent p.G469G 0.27 TCGA-97-7546-01 2 175983089 175983089 G A ATF2 Missense_Mutation p.P70S 0.24 deleterious(0) possibly_damaging(0.809) TCGA-97-7546-01 2 179638339 179638339 C A TTN Missense_Mutation p.D2482Y 0.07 TCGA-97-7546-01 2 200137283 200137283 C A SATB2 Missense_Mutation p.R618L 0.24 deleterious(0) probably_damaging(0.943) TCGA-97-7546-01 2 241683359 241683359 C A KIF1A Missense_Mutation p.S1195I 0.25 tolerated(0.06) benign(0.09) TCGA-97-7546-01 2 26691279 26691279 C A OTOF Nonsense_Mutation p.E1363* 0.10 TCGA-97-7546-01 2 31147628 31147628 C A GALNT14 Nonsense_Mutation p.E410* 0.23 TCGA-97-7546-01 2 68804988 68804988 G T APLF Missense_Mutation p.G457V 0.15 deleterious(0) probably_damaging(0.93) TCGA-97-7546-01 2 72360249 72360249 C T CYP26B1 Missense_Mutation p.G350E 0.19 tolerated(0.27) benign(0.217) TCGA-97-7546-01 2 77745966 77745966 C A LRRTM4 Missense_Mutation p.K343N 0.26 tolerated(0.07) probably_damaging(0.997) TCGA-97-7546-01 2 97526877 97526877 C A SEMA4C Missense_Mutation p.G663V 0.30 tolerated(0.12) probably_damaging(0.98) TCGA-97-7546-01 2 97526878 97526878 C A SEMA4C Missense_Mutation p.G663W 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-97-7546-01 3 12645699 12645699 G A RAF1 Missense_Mutation p.S257L 0.31 deleterious(0.01) benign(0.226) TCGA-97-7546-01 3 148586701 148586701 G T CPA3 Splice_Site p.X49_splice 0.29 TCGA-97-7546-01 3 148614332 148614332 C T CPA3 Silent p.D364D 0.10 TCGA-97-7546-01 3 155198723 155198723 C A PLCH1 3'UTR 0.12 TCGA-97-7546-01 3 183700641 183700641 C A ABCC5 Missense_Mutation p.R249L 0.26 deleterious(0) probably_damaging(0.999) TCGA-97-7546-01 3 187386920 187386920 G T SST Missense_Mutation p.A95D 0.12 tolerated(0.62) benign(0.174) TCGA-97-7546-01 3 187386921 187386921 C G SST Missense_Mutation p.A95P 0.11 tolerated(0.28) benign(0.005) TCGA-97-7546-01 3 197682660 197682660 A G RPL35A 3'UTR 0.12 TCGA-97-7546-01 3 197687280 197687280 C T LMLN Missense_Mutation p.P63L 0.41 tolerated(0.07) benign(0.009) TCGA-97-7546-01 3 431095 431095 C A CHL1 Missense_Mutation p.A803D 0.13 deleterious(0) probably_damaging(1) TCGA-97-7546-01 3 4712497 4712497 G A ITPR1 Silent p.V682V 0.14 TCGA-97-7546-01 3 49066742 49066742 T C IMPDH2 Silent p.P14P 0.27 TCGA-97-7546-01 3 49166129 49166129 T C LAMB2 Missense_Mutation p.M619V 0.42 deleterious(0) possibly_damaging(0.542) TCGA-97-7546-01 3 7620820 7620820 G A GRM7 Missense_Mutation p.A743T 0.10 tolerated(0.17) probably_damaging(0.998) TCGA-97-7546-01 3 81698058 81698058 C A GBE1 Missense_Mutation p.A214S 0.40 tolerated(0.34) probably_damaging(0.998) TCGA-97-7546-01 3 89448476 89448476 A T EPHA3 Missense_Mutation p.Q480H 0.26 deleterious(0.04) probably_damaging(0.998) TCGA-97-7546-01 3 97356759 97356759 C T EPHA6 Missense_Mutation p.L873F 0.34 deleterious(0) probably_damaging(0.933) TCGA-97-7546-01 3 97467588 97467588 A G EPHA6 3'UTR 0.38 TCGA-97-7546-01 4 114682252 114682252 G C CAMK2D 5'Flank 0.25 TCGA-97-7546-01 4 119163305 119163305 G T NDST3 Splice_Site p.X800_splice 0.21 TCGA-97-7546-01 4 126241834 126241834 G C FAT4 Missense_Mutation p.G1423A 0.07 probably_damaging(0.993) TCGA-97-7546-01 4 141832458 141832458 C A RNF150 Silent p.L346L 0.23 TCGA-97-7546-01 4 151682995 151682995 C A LRBA Missense_Mutation p.W1862L 0.17 deleterious(0) probably_damaging(0.993) TCGA-97-7546-01 4 164061434 164061434 C T NAF1 Missense_Mutation p.M273I 0.26 tolerated(0.05) benign(0.089) TCGA-97-7546-01 4 17492369 17492369 C A QDPR Splice_Site p.X182_splice 0.10 TCGA-97-7546-01 4 188924130 188924130 G T ZFP42 Nonsense_Mutation p.E57* 0.20 TCGA-97-7546-01 4 189026054 189026054 C A TRIML2 Missense_Mutation p.R24S 0.21 deleterious(0.04) benign(0.218) TCGA-97-7546-01 4 189060824 189060824 G T TRIML1 Missense_Mutation p.V38L 0.25 tolerated(0.39) benign(0.009) TCGA-97-7546-01 4 38800341 38800341 G T TLR1 Missense_Mutation p.H38N 0.27 tolerated(0.3) benign(0.086) TCGA-97-7546-01 4 55139896 55139896 C A PDGFRA Silent p.P519P 0.22 TCGA-97-7546-01 4 55139897 55139897 A G PDGFRA Missense_Mutation p.T520A 0.23 tolerated(0.51) benign(0) TCGA-97-7546-01 4 5664968 5664968 C A EVC2 Missense_Mutation p.W337C 0.28 tolerated(0.14) possibly_damaging(0.663) TCGA-97-7546-01 4 5837717 5837717 G T CRMP1 Silent p.A516A 0.26 TCGA-97-7546-01 4 74308081 74308081 G A AFP Missense_Mutation p.R184H 0.34 tolerated(0.44) benign(0.016) TCGA-97-7546-01 4 81974526 81974526 A G BMP3 Missense_Mutation p.I419V 0.26 deleterious(0) probably_damaging(0.994) TCGA-97-7546-01 4 84338004 84338004 C A HELQ Missense_Mutation p.Q1026H 0.25 deleterious(0) probably_damaging(0.99) TCGA-97-7546-01 4 85724565 85724565 C A WDFY3 Missense_Mutation p.D829Y 0.19 deleterious(0.02) possibly_damaging(0.799) TCGA-97-7546-01 4 88766569 88766569 T C MEPE Silent p.S183S 0.26 TCGA-97-7546-01 5 122281823 122281823 A T SNX24 Missense_Mutation p.Q73L 0.30 deleterious(0) possibly_damaging(0.462) TCGA-97-7546-01 5 126792966 126792966 G T MEGF10 Missense_Mutation p.D1127Y 0.27 deleterious(0) probably_damaging(0.953) TCGA-97-7546-01 5 132015566 132015566 G - IL4 Frame_Shift_Del p.G116Afs*5 0.13 TCGA-97-7546-01 5 140167866 140167866 C T PCDHA1 Missense_Mutation p.T664I 0.24 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-97-7546-01 5 140210056 140210056 G C PCDHA6 Missense_Mutation p.D794H 0.34 deleterious_low_confidence(0.02) benign(0.009) TCGA-97-7546-01 5 140237240 140237240 C A PCDHA10 Missense_Mutation p.A536E 0.52 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-97-7546-01 5 140581105 140581105 G T PCDHB11 Silent p.V586V 0.36 TCGA-97-7546-01 5 140741739 140741739 G T PCDHGB2 Silent p.R679R 0.31 TCGA-97-7546-01 5 140784598 140784598 C G PCDHGA9 Silent p.L693L 0.20 TCGA-97-7546-01 5 140798052 140798052 A T PCDHGB7 Missense_Mutation p.H209L 0.19 tolerated(0.28) benign(0.008) TCGA-97-7546-01 5 145435760 145435760 G T SH3RF2 Silent p.R513R 0.35 TCGA-97-7546-01 5 158523367 158523367 C A EBF1 Missense_Mutation p.Q113H 0.28 tolerated(0.07) benign(0.385) TCGA-97-7546-01 5 164028186 164028186 G T CTC-340A15.2 RNA 0.22 TCGA-97-7546-01 5 169805858 169805858 G A KCNMB1 Silent p.N142N 0.17 TCGA-97-7546-01 5 52356839 52356839 G T ITGA2 Missense_Mutation p.G474V 0.34 deleterious(0.02) probably_damaging(0.993) TCGA-97-7546-01 5 54275063 54275063 C T ESM1 3'UTR 0.26 TCGA-97-7546-01 5 64766967 64766967 C A ADAMTS6 Nonsense_Mutation p.E34* 0.29 TCGA-97-7546-01 5 75621336 75621336 G C SV2C Silent p.L716L 0.25 TCGA-97-7546-01 5 7773143 7773143 G T ADCY2 Silent p.V771V 0.33 TCGA-97-7546-01 5 82875806 82875806 C T VCAN Silent p.C3296C 0.17 TCGA-97-7546-01 5 9629708 9629708 T A TAS2R1 Missense_Mutation p.K146I 0.29 deleterious(0.03) benign(0.378) TCGA-97-7546-01 5 96364290 96364290 G T LNPEP 3'UTR 0.31 TCGA-97-7546-01 6 10586824 10586824 G T GCNT2 Intron 0.25 TCGA-97-7546-01 6 107955481 107955481 C A SOBP Missense_Mutation p.P478Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-97-7546-01 6 114379192 114379192 G C HS3ST5 Silent p.L90L 0.21 TCGA-97-7546-01 6 121629179 121629179 C A TBC1D32 Missense_Mutation p.W211C 0.18 deleterious(0) probably_damaging(0.99) TCGA-97-7546-01 6 130466509 130466509 G T SAMD3 Missense_Mutation p.S418R 0.25 tolerated(0.13) possibly_damaging(0.548) TCGA-97-7546-01 6 137815150 137815150 C T OLIG3 Missense_Mutation p.G53E 0.13 tolerated(0.1) benign(0.002) TCGA-97-7546-01 6 137815151 137815151 C T OLIG3 Missense_Mutation p.G53R 0.13 deleterious(0.02) benign(0.178) TCGA-97-7546-01 6 13977460 13977460 T G RNF182 Missense_Mutation p.L37R 0.27 deleterious(0) probably_damaging(1) TCGA-97-7546-01 6 13977461 13977461 G T RNF182 Silent p.L37L 0.26 TCGA-97-7546-01 6 146755768 146755768 G A GRM1 Missense_Mutation p.D1141N 0.08 tolerated_low_confidence(0.11) benign(0.208) TCGA-97-7546-01 6 159457971 159457971 C A TAGAP Missense_Mutation p.V362L 0.16 tolerated(0.86) benign(0.001) TCGA-97-7546-01 6 165801872 165801872 T C PDE10A Missense_Mutation p.Q576R 0.22 tolerated(0.07) benign(0.297) TCGA-97-7546-01 6 170892118 170892121 AATG - PDCD2 Intron 0.19 TCGA-97-7546-01 6 29408489 29408489 C T OR10C1 Missense_Mutation p.R233C 0.16 deleterious(0) probably_damaging(0.993) TCGA-97-7546-01 6 29430484 29430484 G T OR2H1 Missense_Mutation p.W313L 0.25 tolerated(0.23) benign(0) TCGA-97-7546-01 6 38818077 38818077 G A DNAH8 Silent p.Q1533Q 0.32 TCGA-97-7546-01 6 38891790 38891790 G T DNAH8 Missense_Mutation p.C3388F 0.24 possibly_damaging(0.477) TCGA-97-7546-01 6 43323347 43323347 T A ZNF318 Silent p.P575P 0.23 TCGA-97-7546-01 6 52850269 52850269 C A GSTA4 Missense_Mutation p.K84N 0.29 deleterious(0.04) benign(0.011) TCGA-97-7546-01 6 69666045 69666045 C T BAI3 Missense_Mutation p.A442V 0.10 tolerated(0.75) possibly_damaging(0.653) TCGA-97-7546-01 6 75841753 75841753 G A COL12A1 Missense_Mutation p.P1947L 0.23 possibly_damaging(0.876) TCGA-97-7546-01 6 87797884 87797884 A G CGA Missense_Mutation p.L12P 0.29 deleterious(0) probably_damaging(0.979) TCGA-97-7546-01 6 90605016 90605016 C A GJA10 Missense_Mutation p.P277T 0.34 deleterious(0.03) benign(0.053) TCGA-97-7546-01 6 90605017 90605017 C A GJA10 Missense_Mutation p.P277H 0.34 tolerated(0.09) benign(0.031) TCGA-97-7546-01 6 93967918 93967918 C A EPHA7 Missense_Mutation p.G670V 0.32 deleterious(0) probably_damaging(1) TCGA-97-7546-01 7 100390129 100390129 C A ZAN Silent p.G2604G 0.29 TCGA-97-7546-01 7 115624467 115624467 G T TFEC Missense_Mutation p.P10Q 0.27 tolerated(1) benign(0) TCGA-97-7546-01 7 116199023 116199023 A G CAV1 Silent p.A73A 0.24 TCGA-97-7546-01 7 126883250 126883250 G T GRM8 Nonsense_Mutation p.C3* 0.26 TCGA-97-7546-01 7 141726932 141726932 G T MGAM Missense_Mutation p.A334S 0.21 tolerated(0.15) benign(0.063) TCGA-97-7546-01 7 14647118 14647118 G T DGKB Missense_Mutation p.F459L 0.23 deleterious(0.04) probably_damaging(0.957) TCGA-97-7546-01 7 149174137 149174137 A C ZNF746 Silent p.G238G 0.21 TCGA-97-7546-01 7 36895295 36895295 G A ELMO1 Missense_Mutation p.T682M 0.26 tolerated(0.2) probably_damaging(0.984) TCGA-97-7546-01 7 41729603 41729603 C A INHBA Missense_Mutation p.R309L 0.21 deleterious(0) possibly_damaging(0.809) TCGA-97-7546-01 7 4247746 4247746 G T SDK1 Missense_Mutation p.A1744S 0.22 tolerated(0.37) benign(0.014) TCGA-97-7546-01 7 53104336 53104336 C A POM121L12 3'UTR 0.23 TCGA-97-7546-01 8 102731625 102731625 C T NCALD Missense_Mutation p.G78E 0.11 deleterious(0.01) probably_damaging(0.953) TCGA-97-7546-01 8 113364662 113364662 G T CSMD3 Missense_Mutation p.Q2080K 0.24 deleterious(0.01) benign(0.213) TCGA-97-7546-01 8 121344948 121344948 G A COL14A1 Missense_Mutation p.G1587R 0.38 deleterious(0) probably_damaging(1) TCGA-97-7546-01 8 125033810 125033810 C A FER1L6 Silent p.A678A 0.13 TCGA-97-7546-01 8 145268189 145268189 G A MROH1 Intron 0.43 TCGA-97-7546-01 8 145947374 145947374 C A ZNF251 Missense_Mutation p.W557C 0.42 deleterious(0.01) possibly_damaging(0.759) TCGA-97-7546-01 8 24242041 24242041 A T ADAMDEC1 Silent p.L8L 0.33 TCGA-97-7546-01 8 24299997 24299997 C A ADAM7 Missense_Mutation p.L22I 0.09 tolerated(0.4) benign(0.015) TCGA-97-7546-01 8 25325745 25325745 G T CDCA2 Missense_Mutation p.G184V 0.21 tolerated(0.05) possibly_damaging(0.754) TCGA-97-7546-01 8 52320868 52320868 C A PXDNL Missense_Mutation p.G1106C 0.09 deleterious(0) probably_damaging(0.998) TCGA-97-7546-01 8 59508123 59508123 T C NSMAF Missense_Mutation p.K661E 0.25 deleterious(0) possibly_damaging(0.575) TCGA-97-7546-01 8 82626216 82626216 T A ZFAND1 Silent p.T139T 0.12 TCGA-97-7546-01 9 100678466 100678466 T A C9orf156 Silent p.L77L 0.19 TCGA-97-7546-01 9 107267317 107267317 G T OR13F1 Missense_Mutation p.M258I 0.27 deleterious(0.01) benign(0.026) TCGA-97-7546-01 9 108097868 108097868 C T SLC44A1 Silent p.C98C 0.26 TCGA-97-7546-01 9 127262971 127262971 C T NR5A1 Missense_Mutation p.G90S 0.27 deleterious(0) probably_damaging(0.995) TCGA-97-7546-01 9 131730939 131730939 G T NUP188 Missense_Mutation p.R247M 0.13 deleterious(0.01) probably_damaging(1) TCGA-97-7546-01 9 131730940 131730940 G T NUP188 Missense_Mutation p.R247S 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-97-7546-01 9 132863393 132863393 G A GPR107 Missense_Mutation p.G341E 0.30 deleterious(0) probably_damaging(0.997) TCGA-97-7546-01 9 134471745 134471745 C A RAPGEF1 Missense_Mutation p.D709Y 0.27 deleterious(0) probably_damaging(0.967) TCGA-97-7546-01 9 139409742 139409742 C A NOTCH1 Missense_Mutation p.G672W 0.38 deleterious(0) probably_damaging(1) TCGA-97-7546-01 9 17791273 17791273 G A SH3GL2 Silent p.L223L 0.16 TCGA-97-7546-01 9 17791274 17791274 G T SH3GL2 Nonsense_Mutation p.E224* 0.16 TCGA-97-7546-01 9 37740199 37740199 G T FRMPD1 Missense_Mutation p.Q558H 0.37 tolerated(0.17) benign(0.004) TCGA-97-7546-01 9 8521338 8521338 G T PTPRD Nonsense_Mutation p.Y300* 0.18 TCGA-97-7546-01 X 105855611 105855611 G C CXorf57 Missense_Mutation p.D101H 0.29 deleterious(0) probably_damaging(1) TCGA-97-7546-01 X 107979005 107979005 C A IRS4 Missense_Mutation p.W190C 0.24 deleterious(0) probably_damaging(0.999) TCGA-97-7546-01 X 117676698 117676698 A G DOCK11 Missense_Mutation p.K38R 0.31 tolerated(0.23) benign(0.036) TCGA-97-7546-01 X 120008948 120008948 C A CT47B1 Missense_Mutation p.A193S 0.30 tolerated(0.14) probably_damaging(0.971) TCGA-97-7546-01 X 120009178 120009178 G T CT47B1 Missense_Mutation p.P116Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-97-7546-01 X 129059173 129059173 T A UTP14A Splice_Site p.X583_splice 0.24 TCGA-97-7546-01 X 130416558 130416558 G T IGSF1 Missense_Mutation p.T369N 0.42 tolerated(0.26) benign(0.283) TCGA-97-7546-01 X 134947917 134947917 G T CT45A5 Nonsense_Mutation p.C136* 0.30 TCGA-97-7546-01 X 135067901 135067901 G T SLC9A6 Silent p.L80L 0.18 TCGA-97-7546-01 X 135750017 135750017 A T ARHGEF6 3'UTR 0.22 TCGA-97-7546-01 X 140984900 140984900 C A MAGEC3 Silent p.P452P 0.39 TCGA-97-7546-01 X 144904758 144904758 G T SLITRK2 Missense_Mutation p.S272I 0.32 tolerated(0.11) benign(0.001) TCGA-97-7546-01 X 148072969 148072969 T C AFF2 3'UTR 0.39 TCGA-97-7546-01 X 149101926 149101926 A G CXorf40B Missense_Mutation p.L56P 0.18 deleterious(0) probably_damaging(0.944) TCGA-97-7546-01 X 149901131 149901131 G C MTMR1 Missense_Mutation p.D329H 0.26 deleterious(0) probably_damaging(0.942) TCGA-97-7546-01 X 150840152 150840152 C A PASD1 Silent p.L446L 0.25 TCGA-97-7546-01 X 151998262 151998262 G T CETN2 Silent p.R16R 0.25 TCGA-97-7546-01 X 152018931 152018931 G T NSDHL Missense_Mutation p.Q77H 0.24 tolerated(0.06) benign(0.005) TCGA-97-7546-01 X 15287938 15287938 G T ASB9 Missense_Mutation p.P20H 0.21 tolerated(0.06) benign(0.245) TCGA-97-7546-01 X 153136566 153136566 G T L1CAM Missense_Mutation p.P157T 0.20 deleterious(0.02) probably_damaging(1) TCGA-97-7546-01 X 153590841 153590841 T C FLNA Missense_Mutation p.K837R 0.22 tolerated(0.09) benign(0.396) TCGA-97-7546-01 X 155171606 155171606 G T VAMP7 Nonsense_Mutation p.E196* 0.10 TCGA-97-7546-01 X 155171607 155171607 A T VAMP7 Missense_Mutation p.E196V 0.11 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-97-7546-01 X 155233457 155233457 C G IL9R Missense_Mutation p.H124D 0.19 tolerated(0.2) benign(0.026) TCGA-97-7546-01 X 22132685 22132685 A G PHEX Missense_Mutation p.Q428R 0.14 tolerated(0.13) benign(0.068) TCGA-97-7546-01 X 24608231 24608231 C G PCYT1B Missense_Mutation p.R132T 0.23 deleterious(0) probably_damaging(1) TCGA-97-7546-01 X 30738765 30738765 G A GK Missense_Mutation p.G416R 0.18 deleterious(0.01) benign(0.138) TCGA-97-7546-01 X 32380912 32380912 G T DMD Missense_Mutation p.T1773N 0.25 possibly_damaging(0.607) TCGA-97-7546-01 X 32481653 32481653 C A DMD Missense_Mutation p.G1112V 0.36 benign(0.254) TCGA-97-7546-01 X 3533931 3533931 G A PRKX Silent p.N292N 0.21 TCGA-97-7546-01 X 35970075 35970075 C A CXorf22 Silent p.T347T 0.14 TCGA-97-7546-01 X 39921532 39921532 G A BCOR Nonsense_Mutation p.Q1430* 0.22 TCGA-97-7546-01 X 46522080 46522080 T G SLC9A7 Splice_Site p.X265_splice 0.30 TCGA-97-7546-01 X 46618218 46618218 G C SLC9A7 Missense_Mutation p.L83V 0.20 tolerated(0.06) possibly_damaging(0.629) TCGA-97-7546-01 X 48418713 48418713 C A TBC1D25 Missense_Mutation p.P473T 0.27 deleterious(0.05) probably_damaging(0.997) TCGA-97-7546-01 X 48629391 48629391 G A GLOD5 Missense_Mutation p.E84K 0.17 deleterious(0.03) probably_damaging(0.982) TCGA-97-7546-01 X 49065126 49065126 G T CACNA1F Missense_Mutation p.P1669T 0.27 tolerated(0.16) benign(0.002) TCGA-97-7546-01 X 50111949 50111949 G T DGKK RNA 0.32 TCGA-97-7546-01 X 72667267 72667267 C - CDX4 Frame_Shift_Del p.S61Afs*38 0.28 TCGA-97-7546-01 X 77529058 77529058 C A CYSLTR1 Missense_Mutation p.M62I 0.17 deleterious(0.01) probably_damaging(0.93) TCGA-97-7546-01 X 78216382 78216382 G A P2RY10 Missense_Mutation p.C122Y 0.28 tolerated(0.92) benign(0.005) TCGA-97-7546-01 X 86877411 86877411 A C KLHL4 Missense_Mutation p.L375F 0.28 deleterious(0.01) probably_damaging(1) TCGA-97-7546-01 X 91873430 91873430 C T PCDH11X Nonsense_Mutation p.Q1179* 0.22 TCGA-97-7547-01 10 104182723 104182723 C T FBXL15 Silent p.F292F 0.33 TCGA-97-7547-01 10 134218902 134218902 G C PWWP2B Missense_Mutation p.E300Q 0.13 tolerated(0.25) benign(0.043) TCGA-97-7547-01 10 33103369 33103369 A T C10ORF68 Nonsense_Mutation p.K328* 0.23 TCGA-97-7547-01 10 38345022 38345022 G T ZNF33A Missense_Mutation p.R657I 0.42 deleterious(0) probably_damaging(0.948) TCGA-97-7547-01 10 84745430 84745430 T A NRG3 3'Flank 0.20 TCGA-97-7547-01 10 84745431 84745431 A T NRG3 3'Flank 0.21 TCGA-97-7547-01 10 98118875 98118875 C A OPALIN 5'UTR 0.33 TCGA-97-7547-01 10 99968825 99968825 A T R3HCC1L Silent p.S318S 0.23 TCGA-97-7547-01 11 106617361 106617361 C A GUCY1A2 Missense_Mutation p.R615S 0.44 tolerated_low_confidence(0.65) benign(0) TCGA-97-7547-01 11 122817321 122817321 A T C11orf63 Missense_Mutation p.S584C 0.61 deleterious(0.01) possibly_damaging(0.893) TCGA-97-7547-01 11 18195490 18195490 C A MRGPRX4 Silent p.G229G 0.25 TCGA-97-7547-01 11 18195491 18195491 C A MRGPRX4 Missense_Mutation p.L230M 0.25 deleterious(0.01) probably_damaging(0.986) TCGA-97-7547-01 11 55135705 55135705 G A OR4A15 Missense_Mutation p.E116K 0.06 tolerated_low_confidence(0.12) benign(0.023) TCGA-97-7547-01 11 5529627 5529627 G A UBQLN3 Nonsense_Mutation p.Q388* 0.05 TCGA-97-7547-01 11 5624859 5624859 T C TRIM6-TRIM34 Missense_Mutation p.L134P 0.05 deleterious(0) probably_damaging(0.991) TCGA-97-7547-01 11 57114626 57114626 G C P2RX3 Missense_Mutation p.V98L 0.20 tolerated(0.26) benign(0.005) TCGA-97-7547-01 11 60170396 60170396 C T MS4A14 Silent p.V110V 0.20 TCGA-97-7547-01 11 61318893 61318893 C T SYT7 Missense_Mutation p.D60N 0.23 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-97-7547-01 11 65271985 65271985 C T MALAT1 RNA 0.43 TCGA-97-7547-01 11 65361297 65361297 A T KCNK7 Missense_Mutation p.M123K 0.11 deleterious(0) benign(0.275) TCGA-97-7547-01 11 89892452 89892452 C A NAALAD2 Silent p.A312A 0.44 TCGA-97-7547-01 11 92507250 92507250 G C FAT3 Silent p.G1413G 0.26 TCGA-97-7547-01 12 102158580 102158580 T C GNPTAB Silent p.K705K 0.46 TCGA-97-7547-01 12 39170048 39170048 A T CPNE8 Missense_Mutation p.C155S 0.36 tolerated(0.3) benign(0.021) TCGA-97-7547-01 12 52843283 52843283 C T KRT6B Silent p.R349R 0.50 TCGA-97-7547-01 12 53877763 53877763 A - MAP3K12 Frame_Shift_Del p.K431Sfs*10 0.39 TCGA-97-7547-01 13 25008744 25008744 C A PARP4 Missense_Mutation p.R1512L 0.34 tolerated(0.34) benign(0) TCGA-97-7547-01 13 25026574 25026574 G A PARP4 Missense_Mutation p.P995L 0.19 tolerated(0.59) benign(0.006) TCGA-97-7547-01 13 35756583 35756583 A T NBEA Missense_Mutation p.L1583F 0.30 deleterious(0) probably_damaging(0.999) TCGA-97-7547-01 13 96086182 96086182 C T CLDN10 Missense_Mutation p.T32M 0.37 deleterious(0) possibly_damaging(0.766) TCGA-97-7547-01 14 20389309 20389309 C A OR4K5 Missense_Mutation p.P182T 0.48 deleterious(0.05) probably_damaging(0.993) TCGA-97-7547-01 14 20389310 20389310 C A OR4K5 Missense_Mutation p.P182H 0.47 deleterious(0) probably_damaging(0.996) TCGA-97-7547-01 14 24702395 24702395 G C GMPR2 5'UTR 0.55 TCGA-97-7547-01 14 50085480 50085480 T C RPL36AL 3'UTR 0.50 TCGA-97-7547-01 14 64542737 64542737 C T SYNE2 Silent p.S3647S 0.29 TCGA-97-7547-01 14 70253009 70253009 G A SLC10A1 Silent p.T124T 0.55 TCGA-97-7547-01 14 94079309 94079309 G T UNC79 Silent p.T1130T 0.48 TCGA-97-7547-01 14 95053763 95053763 C T SERPINA5 Missense_Mutation p.H22Y 0.46 tolerated(0.36) benign(0.005) TCGA-97-7547-01 15 33962735 33962735 G C RYR3 Silent p.T1946T 0.25 TCGA-97-7547-01 15 43813642 43813642 C T MAP1A 5'UTR 0.38 TCGA-97-7547-01 15 51014345 51014346 TG - SPPL2A Frame_Shift_Del p.Y436Lfs*48 0.29 TCGA-97-7547-01 15 68124644 68124644 G A SKOR1 Missense_Mutation p.E777K 0.06 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-97-7547-01 16 14738156 14738156 C T BFAR 5'UTR 0.21 TCGA-97-7547-01 16 14738178 14738178 C T BFAR 5'UTR 0.23 TCGA-97-7547-01 16 14738306 14738306 C T BFAR Missense_Mutation p.H35Y 0.17 deleterious(0.04) possibly_damaging(0.794) TCGA-97-7547-01 16 14738323 14738323 C T BFAR Silent p.I40I 0.15 TCGA-97-7547-01 16 14738324 14738324 C T BFAR Silent p.L41L 0.16 TCGA-97-7547-01 16 14738369 14738369 C T BFAR Missense_Mutation p.H56Y 0.25 tolerated(0.14) probably_damaging(0.979) TCGA-97-7547-01 16 14738414 14738414 C T BFAR Missense_Mutation p.P71S 0.24 deleterious(0) probably_damaging(1) TCGA-97-7547-01 16 1841019 1841019 C T IGFALS Missense_Mutation p.R505H 0.12 tolerated(0.67) benign(0.004) TCGA-97-7547-01 16 23085050 23085050 C A USP31 Silent p.S776S 0.25 TCGA-97-7547-01 16 27556834 27556834 T A GTF3C1 Missense_Mutation p.I78F 0.36 deleterious(0) possibly_damaging(0.646) TCGA-97-7547-01 16 2809140 2809140 G T SRRM2 Splice_Site p.X219_splice 0.58 TCGA-97-7547-01 16 28493500 28493500 C A CLN3 Missense_Mutation p.A328S 0.26 tolerated(0.05) possibly_damaging(0.868) TCGA-97-7547-01 16 31429436 31429436 C A ITGAD Missense_Mutation p.T847K 0.40 tolerated(0.05) benign(0.122) TCGA-97-7547-01 16 71779392 71779392 G A AP1G1 Missense_Mutation p.P622L 0.26 tolerated(0.11) benign(0.001) TCGA-97-7547-01 16 77225468 77225468 G C MON1B Missense_Mutation p.R29T 0.44 tolerated_low_confidence(0.23) benign(0.006) TCGA-97-7547-01 17 10426673 10426673 G C MYH2 Silent p.V1843V 0.41 TCGA-97-7547-01 17 1540332 1540332 C A SCARF1 Silent p.V463V 0.16 TCGA-97-7547-01 17 29664508 29664508 G A NF1 Missense_Mutation p.D2184N 0.14 deleterious(0.04) probably_damaging(0.98) TCGA-97-7547-01 17 30510194 30510194 C T RHOT1 Missense_Mutation p.S148L 0.45 deleterious(0) probably_damaging(1) TCGA-97-7547-01 17 33443895 33443895 A T RAD51D Silent p.T102T 0.71 TCGA-97-7547-01 17 35506832 35506832 C T ACACA Missense_Mutation p.E1879K 0.14 deleterious(0) benign(0.108) TCGA-97-7547-01 17 39471861 39471861 C T KRTAP17-1 Silent p.Q14Q 0.28 TCGA-97-7547-01 17 41020274 41020274 A T AOC4P RNA 0.24 TCGA-97-7547-01 17 53084899 53084899 C T STXBP4 Silent p.L203L 0.37 TCGA-97-7547-01 17 57126725 57126725 C G TRIM37 Missense_Mutation p.Q448H 0.42 deleterious_low_confidence(0) benign(0.052) TCGA-97-7547-01 17 61987426 61987426 C T CSHL1 Intron 0.38 TCGA-97-7547-01 17 6330284 6330284 G T AIPL1 Silent p.R187R 0.14 TCGA-97-7547-01 18 30092359 30092359 C G WBP11P1 RNA 0.32 TCGA-97-7547-01 18 34340586 34340586 G A FHOD3 Missense_Mutation p.G1306S 0.36 tolerated(0.28) benign(0.007) TCGA-97-7547-01 18 47107935 47107935 G A LIPG Missense_Mutation p.R315H 0.08 deleterious(0.01) probably_damaging(1) TCGA-97-7547-01 18 56246184 56246184 T A ALPK2 Silent p.A608A 0.49 TCGA-97-7547-01 18 6978242 6978242 G T LAMA1 Missense_Mutation p.T2048N 0.27 tolerated(0.28) benign(0.004) TCGA-97-7547-01 19 18975033 18975033 G T UPF1 Missense_Mutation p.G944C 0.46 deleterious(0) probably_damaging(0.917) TCGA-97-7547-01 19 41040158 41040158 G C SPTBN4 Missense_Mutation p.D1423H 0.11 deleterious(0.01) possibly_damaging(0.863) TCGA-97-7547-01 19 42489502 42489502 A G ATP1A3 Missense_Mutation p.L240S 0.43 deleterious(0) probably_damaging(1) TCGA-97-7547-01 19 42798355 42798355 C T CIC Missense_Mutation p.S1409L 0.06 possibly_damaging(0.885) TCGA-97-7547-01 19 44636270 44636270 C A ZNF225 Silent p.T501T 0.39 TCGA-97-7547-01 19 49339627 49339627 C A HSD17B14 Silent p.V14V 0.32 TCGA-97-7547-01 1 112524696 112524696 C A KCND3 Missense_Mutation p.C218F 0.19 deleterious(0.01) benign(0) TCGA-97-7547-01 1 150131275 150131275 C T PLEKHO1 Missense_Mutation p.P263S 0.09 tolerated(0.46) benign(0.001) TCGA-97-7547-01 1 151773696 151773696 C T LINGO4 Silent p.L495L 0.09 TCGA-97-7547-01 1 155698856 155698856 C - DAP3 Frame_Shift_Del p.W210Gfs*21 0.10 TCGA-97-7547-01 1 156262990 156262990 G T C1orf85 Missense_Mutation p.L356M 0.48 deleterious(0.04) benign(0.221) TCGA-97-7547-01 1 158299853 158299853 C G CD1B Silent p.L132L 0.06 TCGA-97-7547-01 1 171605716 171605716 G A MYOC Silent p.I288I 0.16 TCGA-97-7547-01 1 182369068 182369068 A C TEDDM1 Missense_Mutation p.Y185D 0.16 deleterious(0) probably_damaging(0.992) TCGA-97-7547-01 1 19549906 19549906 G C EMC1 Nonsense_Mutation p.S787* 0.18 TCGA-97-7547-01 1 197070009 197070009 C A ASPM Missense_Mutation p.G2791V 0.25 tolerated(0.32) benign(0.004) TCGA-97-7547-01 1 198711402 198711402 C T PTPRC Missense_Mutation p.A868V 0.58 deleterious(0.02) probably_damaging(0.999) TCGA-97-7547-01 1 198713307 198713307 C G PTPRC Missense_Mutation p.P941R 0.65 deleterious(0) probably_damaging(0.989) TCGA-97-7547-01 1 204413539 204413539 C A PIK3C2B Nonsense_Mutation p.E898* 0.67 TCGA-97-7547-01 1 209776559 209776559 G T CAMK1G Missense_Mutation p.K74N 0.25 deleterious(0.02) benign(0.008) TCGA-97-7547-01 1 209800794 209800794 G T LAMB3 Silent p.A473A 0.33 TCGA-97-7547-01 1 216172401 216172401 C A USH2A Splice_Site p.X2162_splice 0.57 TCGA-97-7547-01 1 223179146 223179146 G C DISP1 Silent p.G1469G 0.28 TCGA-97-7547-01 1 225598100 225598100 T C LBR Missense_Mutation p.M403V 0.09 deleterious(0) possibly_damaging(0.578) TCGA-97-7547-01 1 228285584 228285584 T C ARF1 Missense_Mutation p.I139T 0.36 deleterious_low_confidence(0.01) benign(0.38) TCGA-97-7547-01 1 237666691 237666691 A T RYR2 Missense_Mutation p.K833N 0.16 benign(0.255) TCGA-97-7547-01 1 237729890 237729890 G T RYR2 Missense_Mutation p.G1080C 0.36 benign(0.18) TCGA-97-7547-01 1 248028004 248028004 C G TRIM58 Intron 0.34 TCGA-97-7547-01 1 248129274 248129274 T A OR2AK2 Missense_Mutation p.V214D 0.55 deleterious(0.01) probably_damaging(0.968) TCGA-97-7547-01 1 25233845 25233845 C A RUNX3 Missense_Mutation p.R217L 0.24 deleterious(0) benign(0.028) TCGA-97-7547-01 20 37076807 37076807 T C SNHG11 Intron 0.39 TCGA-97-7547-01 20 40714437 40714437 C T PTPRT Silent p.V1301V 0.41 TCGA-97-7547-01 20 49224947 49224947 A T FAM65C Missense_Mutation p.L308Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-97-7547-01 20 51870518 51870518 C A TSHZ2 Missense_Mutation p.S174Y 0.33 deleterious(0) possibly_damaging(0.907) TCGA-97-7547-01 20 57769142 57769142 G A ZNF831 Missense_Mutation p.G1023E 0.38 tolerated(0.14) benign(0.016) TCGA-97-7547-01 21 32638333 32638333 G C TIAM1 Missense_Mutation p.T319R 0.22 tolerated(0.24) possibly_damaging(0.566) TCGA-97-7547-01 21 46309270 46309270 C A ITGB2 Missense_Mutation p.V600L 0.33 tolerated(0.31) benign(0.015) TCGA-97-7547-01 22 23603711 23603711 A C BCR Missense_Mutation p.D579A 0.21 deleterious(0.01) probably_damaging(0.96) TCGA-97-7547-01 22 45278881 45278881 T C PHF21B 3'UTR 0.22 TCGA-97-7547-01 2 120690065 120690065 C G PTPN4 Missense_Mutation p.S379C 0.13 deleterious(0) possibly_damaging(0.628) TCGA-97-7547-01 2 128394466 128394466 G C MYO7B Missense_Mutation p.R2076P 0.09 deleterious(0) probably_damaging(0.999) TCGA-97-7547-01 2 152552143 152552143 A - NEB Frame_Shift_Del p.D542Ifs*15 0.29 TCGA-97-7547-01 2 163133358 163133358 T G IFIH1 Missense_Mutation p.T715P 0.27 tolerated(0.07) benign(0.323) TCGA-97-7547-01 2 171806226 171806226 G T GORASP2 Missense_Mutation p.A108S 0.25 deleterious(0.01) possibly_damaging(0.902) TCGA-97-7547-01 2 175436802 175436802 G A WIPF1 Missense_Mutation p.S244L 0.43 tolerated_low_confidence(0.44) benign(0.128) TCGA-97-7547-01 2 179478655 179478655 C A TTN Missense_Mutation p.G16452V 0.39 TCGA-97-7547-01 2 179574477 179574477 T C TTN Missense_Mutation p.I9523M 0.43 TCGA-97-7547-01 2 186672753 186672753 T A FSIP2 Silent p.T6329T 0.21 TCGA-97-7547-01 2 207459528 207459528 C T ADAM23 Missense_Mutation p.P716S 0.23 deleterious(0) probably_damaging(0.997) TCGA-97-7547-01 2 216213903 216213906 ACTG - ATIC Frame_Shift_Del p.T532Kfs*16 0.33 TCGA-97-7547-01 2 216964787 216964787 C T TMEM169 Missense_Mutation p.S139L 0.26 tolerated(0.41) benign(0.002) TCGA-97-7547-01 2 219521075 219521075 C T ZNF142 Silent p.L26L 0.14 TCGA-97-7547-01 2 242511798 242511798 C T BOK Silent p.F200F 0.37 TCGA-97-7547-01 2 25463511 25463511 T C DNMT3A Missense_Mutation p.Y724C 0.21 deleterious(0.01) probably_damaging(0.994) TCGA-97-7547-01 2 44203337 44203337 G A LRPPRC Missense_Mutation p.L228F 0.18 deleterious(0.04) probably_damaging(0.994) TCGA-97-7547-01 2 47206041 47206041 G A TTC7A Silent p.K253K 0.35 TCGA-97-7547-01 2 90122054 90122054 C A IGKV1D-17 Missense_Mutation p.T91K 0.13 deleterious(0.02) benign(0.246) TCGA-97-7547-01 2 97361799 97361799 G C FER1L5 RNA 0.22 TCGA-97-7547-01 2 99172083 99172083 A T INPP4A Missense_Mutation p.Q550L 0.08 deleterious(0.02) possibly_damaging(0.767) TCGA-97-7547-01 3 112358289 112358289 G C CCDC80 Nonsense_Mutation p.S155* 0.55 TCGA-97-7547-01 3 114070243 114070243 C A ZBTB20 Nonsense_Mutation p.E228* 0.63 TCGA-97-7547-01 3 126291177 126291177 C A TXNRD3NB Missense_Mutation p.K70N 0.36 possibly_damaging(0.607) TCGA-97-7547-01 3 15686685 15686685 G T BTD Missense_Mutation p.G441V 0.43 deleterious(0.01) probably_damaging(0.962) TCGA-97-7547-01 3 52390704 52390704 C G DNAH1 Missense_Mutation p.I1256M 0.15 probably_damaging(0.986) TCGA-97-7547-01 3 9032298 9032298 C G SRGAP3 Missense_Mutation p.K928N 0.47 tolerated(0.37) benign(0.028) TCGA-97-7547-01 4 100463155 100463155 C A C4orf17 Silent p.P323P 0.17 TCGA-97-7547-01 4 113362526 113362526 G C ALPK1 3'UTR 0.19 TCGA-97-7547-01 4 138452267 138452267 C G PCDH18 Missense_Mutation p.A326P 0.30 deleterious(0) probably_damaging(1) TCGA-97-7547-01 4 164271924 164271924 G T NPY5R Missense_Mutation p.G167C 0.26 deleterious(0) probably_damaging(1) TCGA-97-7547-01 4 175898069 175898069 C T ADAM29 Missense_Mutation p.P465S 0.42 deleterious(0.05) probably_damaging(0.996) TCGA-97-7547-01 4 187517920 187517920 C A FAT1 Silent p.P4258P 0.43 TCGA-97-7547-01 4 77003393 77003393 T A ART3 Nonsense_Mutation p.Y162* 0.46 TCGA-97-7547-01 4 88243936 88243936 C G HSD17B13 Missense_Mutation p.E20Q 0.27 deleterious(0.01) unknown(0) TCGA-97-7547-01 4 94750451 94750451 G A ATOH1 Missense_Mutation p.R125Q 0.14 deleterious(0.01) probably_damaging(0.953) TCGA-97-7547-01 5 115336183 115336183 C G AQPEP Silent p.V523V 0.25 TCGA-97-7547-01 5 13919372 13919372 C A DNAH5 Missense_Mutation p.K296N 0.05 benign(0.286) TCGA-97-7547-01 5 13919373 13919373 T A DNAH5 Missense_Mutation p.K296M 0.05 possibly_damaging(0.823) TCGA-97-7547-01 5 140476387 140476387 C A PCDHB2 Silent p.P671P 0.20 TCGA-97-7547-01 5 140723710 140723710 A G PCDHGA3 Missense_Mutation p.E37G 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-97-7547-01 5 140768908 140768908 C G PCDHGB4 Missense_Mutation p.S486C 0.18 deleterious(0) possibly_damaging(0.634) TCGA-97-7547-01 5 141335529 141335529 C T PCDH12 Missense_Mutation p.A630T 0.23 tolerated(0.65) benign(0.02) TCGA-97-7547-01 5 14610558 14610558 G A FAM105A 3'UTR 0.20 TCGA-97-7547-01 5 154292552 154292552 G A GEMIN5 Silent p.T634T 0.32 TCGA-97-7547-01 5 161116278 161116278 C A GABRA6 Missense_Mutation p.D155E 0.21 tolerated(1) probably_damaging(0.997) TCGA-97-7547-01 5 205920 205920 A C CCDC127 Missense_Mutation p.L92R 0.34 deleterious(0) probably_damaging(0.999) TCGA-97-7547-01 5 206038 206038 C T CCDC127 Missense_Mutation p.E53K 0.35 tolerated(0.07) possibly_damaging(0.461) TCGA-97-7547-01 5 206057 206057 C T CCDC127 Silent p.R46R 0.30 TCGA-97-7547-01 5 31299689 31299689 G A CDH6 Silent p.V254V 0.10 TCGA-97-7547-01 5 55204136 55204136 G A IL31RA Silent p.V466V 0.16 TCGA-97-7547-01 7 100551306 100551306 A T MUC3A Silent p.S19S 0.42 TCGA-97-7547-01 7 100678076 100678076 G A MUC17 Missense_Mutation p.D1127N 0.02 unknown(0) TCGA-97-7547-01 7 100884160 100884160 T C FIS1 Missense_Mutation p.E69G 0.20 tolerated(0.5) possibly_damaging(0.641) TCGA-97-7547-01 7 1049627 1049627 G A C7orf50 Silent p.A94A 0.58 TCGA-97-7547-01 7 112090830 112090830 G C IFRD1 Silent p.A29A 0.21 TCGA-97-7547-01 7 112424043 112424043 G A TMEM168 Missense_Mutation p.L280F 0.07 tolerated(0.27) benign(0.011) TCGA-97-7547-01 7 116770714 116770714 C G ST7 Intron 0.10 TCGA-97-7547-01 7 127015090 127015090 T A ZNF800 Splice_Site p.X101_splice 0.24 TCGA-97-7547-01 7 127961379 127961395 TTTGTCATCTACAGCCT - RBM28 Frame_Shift_Del p.K496Tfs*11 0.13 TCGA-97-7547-01 7 128612636 128612636 C A TNPO3 Missense_Mutation p.R758S 0.30 deleterious(0) probably_damaging(0.992) TCGA-97-7547-01 7 139655362 139655362 G A TBXAS1 Missense_Mutation p.R262H 0.46 tolerated(0.07) possibly_damaging(0.9) TCGA-97-7547-01 7 151878671 151878671 C A KMT2C Missense_Mutation p.D2092Y 0.43 probably_damaging(0.945) TCGA-97-7547-01 7 157414128 157414128 G A PTPRN2 Missense_Mutation p.A757V 0.33 deleterious(0) probably_damaging(0.999) TCGA-97-7547-01 7 64023421 64023421 G C ZNF680 5'UTR 0.27 TCGA-97-7547-01 7 76891586 76891586 A T CCDC146 Missense_Mutation p.R379W 0.29 deleterious(0.01) benign(0.229) TCGA-97-7547-01 7 8125955 8125955 C G GLCCI1 Silent p.L477L 0.37 TCGA-97-7547-01 7 92734062 92734062 C A SAMD9 Missense_Mutation p.G450V 0.40 deleterious(0) probably_damaging(0.999) TCGA-97-7547-01 8 110457431 110457431 A G PKHD1L1 Missense_Mutation p.D1778G 0.25 tolerated(0.11) possibly_damaging(0.633) TCGA-97-7547-01 8 110466963 110466963 G T PKHD1L1 Missense_Mutation p.E2252D 0.23 deleterious(0.01) probably_damaging(1) TCGA-97-7547-01 8 110530508 110530508 T A PKHD1L1 Silent p.T3934T 0.08 TCGA-97-7547-01 8 121170441 121170441 G C COL14A1 Missense_Mutation p.R54T 0.33 tolerated(0.11) possibly_damaging(0.559) TCGA-97-7547-01 8 131861865 131861865 C A ADCY8 Missense_Mutation p.G799C 0.14 tolerated(0.18) benign(0.009) TCGA-97-7547-01 8 131861866 131861866 C A ADCY8 Silent p.L798L 0.13 TCGA-97-7547-01 8 144621321 144621321 C G ZC3H3 Missense_Mutation p.K72N 0.10 deleterious(0) probably_damaging(0.999) TCGA-97-7547-01 8 144808209 144808209 T A FAM83H Missense_Mutation p.K1141M 0.35 deleterious(0) probably_damaging(0.94) TCGA-97-7547-01 8 2967821 2967821 G T CSMD1 Missense_Mutation p.T2156N 0.38 probably_damaging(0.999) TCGA-97-7547-01 8 32617912 32617912 C T NRG1 Missense_Mutation p.P424L 0.32 deleterious(0) probably_damaging(1) TCGA-97-7547-01 8 35608118 35608118 G C UNC5D Missense_Mutation p.D652H 0.28 deleterious(0) possibly_damaging(0.728) TCGA-97-7547-01 8 51314806 51314806 C A SNTG1 Missense_Mutation p.Q22K 0.29 tolerated(0.53) benign(0.019) TCGA-97-7547-01 8 51705310 51705310 C A SNTG1 Missense_Mutation p.P492H 0.07 deleterious(0) probably_damaging(1) TCGA-97-7547-01 8 52321725 52321725 G C PXDNL Missense_Mutation p.A820G 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-97-7547-01 8 68102951 68102951 C A CSPP1 Missense_Mutation p.S1091Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-97-7547-01 8 99961588 99961588 G C OSR2 Silent p.L136L 0.26 TCGA-97-7547-01 9 103261080 103261080 G T TMEFF1 Missense_Mutation p.C77F 0.18 deleterious(0) probably_damaging(0.986) TCGA-97-7547-01 9 133493204 133493204 G T FUBP3 Missense_Mutation p.M196I 0.06 deleterious(0) possibly_damaging(0.821) TCGA-97-7547-01 9 136213404 136213404 C G MED22 Missense_Mutation p.K38N 0.36 tolerated(0.27) probably_damaging(0.989) TCGA-97-7547-01 9 140057730 140057730 G C GRIN1 Missense_Mutation p.G782R 0.18 deleterious(0) probably_damaging(0.997) TCGA-97-7547-01 9 711044 711044 C T KANK1 Missense_Mutation p.S93L 0.10 tolerated(0.18) possibly_damaging(0.682) TCGA-97-7547-01 9 711087 711087 C G KANK1 Silent p.L107L 0.06 TCGA-97-7547-01 9 711446 711446 C T KANK1 Missense_Mutation p.P227L 0.10 tolerated(0.05) benign(0.284) TCGA-97-7547-01 9 73477930 73477930 T G TRPM3 Missense_Mutation p.D119A 0.08 tolerated(0.12) possibly_damaging(0.574) TCGA-97-7547-01 9 87366961 87366961 C A NTRK2 Missense_Mutation p.L453M 0.42 deleterious(0.01) possibly_damaging(0.805) TCGA-97-7547-01 X 106359107 106359107 A T RBM41 Missense_Mutation p.H101Q 0.35 tolerated(0.2) benign(0.218) TCGA-97-7547-01 X 111697858 111697858 G T ZCCHC16 5'UTR 0.32 TCGA-97-7547-01 X 123779098 123779098 C T TENM1 Missense_Mutation p.V591I 0.33 tolerated(0.11) benign(0.079) TCGA-97-7547-01 X 12938975 12938975 G T TLR8 Nonsense_Mutation p.E606* 0.18 TCGA-97-7547-01 X 129799724 129799724 C G ENOX2 Splice_Site p.X332_splice 0.12 TCGA-97-7547-01 X 132670153 132670153 C T GPC3 Silent p.%3D 0.18 TCGA-97-7547-01 X 135104823 135104823 G T SLC9A6 Nonsense_Mutation p.G477* 0.48 TCGA-97-7547-01 X 148068981 148068981 C A AFF2 Silent p.P1236P 0.35 TCGA-97-7547-01 X 150828209 150828209 G T PASD1 Nonsense_Mutation p.E248* 0.28 TCGA-97-7547-01 X 152981134 152981134 G A BCAP31 Silent p.R135R 0.14 TCGA-97-7547-01 X 153130402 153130402 C T L1CAM Missense_Mutation p.E974K 0.32 tolerated(0.63) benign(0.028) TCGA-97-7547-01 X 153215989 153215989 C A HCFC1 Silent p.P1903P 0.38 TCGA-97-7547-01 X 153707110 153707110 C G LAGE3 Missense_Mutation p.A49P 0.22 tolerated(0.25) benign(0.181) TCGA-97-7547-01 X 154130390 154130390 C T F8 Silent p.V2017V 0.32 TCGA-97-7547-01 X 15474024 15474024 T A PIR Missense_Mutation p.S143C 0.37 deleterious(0.04) benign(0.24) TCGA-97-7547-01 X 16168471 16168471 G T GRPR Missense_Mutation p.A153S 0.31 tolerated(0.1) possibly_damaging(0.674) TCGA-97-7547-01 X 21674661 21674661 C T KLHL34 Missense_Mutation p.A416T 0.55 deleterious(0.03) benign(0.021) TCGA-97-7547-01 X 23693132 23693132 A C PRDX4 Missense_Mutation p.I129L 0.27 tolerated(0.18) benign(0.055) TCGA-97-7547-01 X 28807536 28807536 G C IL1RAPL1 Missense_Mutation p.G26R 0.34 tolerated(0.21) benign(0.051) TCGA-97-7547-01 X 36162979 36162979 G T CHDC2 3'UTR 0.36 TCGA-97-7547-01 X 48775876 48775876 G T PIM2 Silent p.P36P 0.31 TCGA-97-7547-01 X 55247881 55247881 A T PAGE5 Silent p.P42P 0.20 TCGA-97-7547-01 X 62885809 62885809 C A ARHGEF9 Missense_Mutation p.R338L 0.45 deleterious(0) probably_damaging(0.945) TCGA-97-7547-01 X 73065920 73065920 G A XIST RNA 0.29 TCGA-97-7547-01 X 73963490 73963490 G C KIAA2022 Nonsense_Mutation p.S301* 0.12 TCGA-97-7547-01 X 74293742 74293742 C T ABCB7 Missense_Mutation p.G303D 0.24 deleterious(0.02) possibly_damaging(0.899) TCGA-97-7547-01 X 79699022 79699022 G T FAM46D Missense_Mutation p.M328I 0.38 deleterious(0) benign(0.314) TCGA-97-7552-01 10 50964886 50964886 C T OGDHL Missense_Mutation p.R104Q 0.12 tolerated(0.59) benign(0) TCGA-97-7552-01 10 73047465 73047465 G A UNC5B Missense_Mutation p.G282R 0.07 deleterious(0) probably_damaging(1) TCGA-97-7552-01 10 98711952 98711952 G C LCOR Missense_Mutation p.G111R 0.08 tolerated(0.24) benign(0.006) TCGA-97-7552-01 11 49974551 49974551 C T OR4C13 Silent p.L193L 0.13 TCGA-97-7552-01 11 62362837 62362837 A G MTA2 Missense_Mutation p.L461P 0.11 deleterious(0) benign(0.305) TCGA-97-7552-01 11 64521112 64521112 G A PYGM Missense_Mutation p.R428C 0.21 deleterious(0) possibly_damaging(0.884) TCGA-97-7552-01 11 65714930 65714930 G A TSGA10IP RNA 0.13 TCGA-97-7552-01 12 112600844 112600844 A C HECTD4 Splice_Site p.X4228_splice 0.05 TCGA-97-7552-01 12 55368298 55368298 A G TESPA1 Missense_Mutation p.W17R 0.31 deleterious(0.04) benign(0.379) TCGA-97-7552-01 12 78513568 78513568 G T NAV3 Missense_Mutation p.D1198Y 0.09 deleterious(0) probably_damaging(1) TCGA-97-7552-01 14 36988334 36988334 G - NKX2-1 Frame_Shift_Del p.Q107Sfs*18 0.18 TCGA-97-7552-01 14 95056549 95056549 C T SERPINA5 Missense_Mutation p.T264M 0.17 deleterious(0.01) probably_damaging(0.983) TCGA-97-7552-01 16 3274335 3274335 T G ZNF200 Silent p.R249R 0.10 TCGA-97-7552-01 16 4165247 4165247 C T ADCY9 Missense_Mutation p.R66Q 0.16 tolerated_low_confidence(0.58) benign(0.083) TCGA-97-7552-01 16 56904081 56904081 C T SLC12A3 Silent p.F225F 0.06 TCGA-97-7552-01 16 721945 721945 G C RHOT2 Missense_Mutation p.R347P 0.08 tolerated(0.21) benign(0.049) TCGA-97-7552-01 17 27003436 27003436 T G SUPT6H Silent p.P295P 0.06 TCGA-97-7552-01 17 29848989 29848989 T A RAB11FIP4 Missense_Mutation p.V272D 0.11 deleterious(0.01) probably_damaging(0.934) TCGA-97-7552-01 18 18650556 18650556 C A ROCK1 Missense_Mutation p.V38L 0.15 deleterious(0.01) possibly_damaging(0.449) TCGA-97-7552-01 18 30092804 30092804 C T WBP11P1 RNA 0.13 TCGA-97-7552-01 18 5433980 5433980 T C EPB41L3 Missense_Mutation p.Y249C 0.10 deleterious(0) probably_damaging(0.996) TCGA-97-7552-01 19 2717373 2717373 G A DIRAS1 Silent p.C144C 0.12 TCGA-97-7552-01 19 38933075 38933075 G C RYR1 Silent p.T84T 0.07 TCGA-97-7552-01 19 38976776 38976776 C T RYR1 Silent p.R1827R 0.13 TCGA-97-7552-01 19 48558162 48558162 G A PLA2G4C Missense_Mutation p.P478S 0.10 deleterious(0.02) probably_damaging(0.992) TCGA-97-7552-01 19 50306626 50306626 C G AP2A1 Silent p.L801L 0.23 TCGA-97-7552-01 19 56443372 56443372 T C NLRP13 Silent p.R102R 0.18 TCGA-97-7552-01 19 9008336 9008336 C T MUC16 Silent p.K13072K 0.09 TCGA-97-7552-01 1 156247793 156247793 A G SMG5 Missense_Mutation p.Y74H 0.08 deleterious(0) possibly_damaging(0.667) TCGA-97-7552-01 1 158631122 158631122 G A SPTA1 Missense_Mutation p.R848C 0.09 deleterious(0.03) benign(0.04) TCGA-97-7552-01 1 205904909 205904909 C T SLC26A9 Missense_Mutation p.A14T 0.06 tolerated(0.21) benign(0.012) TCGA-97-7552-01 1 25718526 25718526 T C RHCE Missense_Mutation p.N198S 0.05 tolerated(0.29) benign(0.023) TCGA-97-7552-01 20 35533856 35533856 C T SAMHD1 Missense_Mutation p.A441T 0.09 deleterious(0) probably_damaging(0.935) TCGA-97-7552-01 21 31655071 31655071 G T KRTAP24-1 Nonsense_Mutation p.Y60* 0.08 TCGA-97-7552-01 2 107423242 107423242 G T ST6GAL2 Silent p.R494R 0.07 TCGA-97-7552-01 2 165984435 165984435 C T SCN3A Silent p.K1033K 0.06 TCGA-97-7552-01 2 174086116 174086116 A C MLTK Intron 0.11 TCGA-97-7552-01 2 179397281 179397281 A T TTN Silent p.L34687L 0.10 TCGA-97-7552-01 2 90193261 90193261 G T IGKV1D-13 Missense_Mutation p.G63V 0.10 deleterious(0) probably_damaging(0.947) TCGA-97-7552-01 3 122990411 122990412 TC - SEC22A Frame_Shift_Del p.S256Ffs*16 0.10 TCGA-97-7552-01 3 88105073 88105073 A G CGGBP1 Silent p.A18A 0.05 TCGA-97-7552-01 5 132199850 132199850 C T GDF9 Missense_Mutation p.A126T 0.12 tolerated(0.59) benign(0.003) TCGA-97-7552-01 7 149174059 149174059 T - ZNF746 Frame_Shift_Del p.C265Afs*6 0.12 TCGA-97-7552-01 7 18767353 18767353 C T HDAC9 Missense_Mutation p.R628C 0.12 deleterious(0.02) benign(0.001) TCGA-97-7552-01 8 8877863 8877863 T C ERI1 Silent p.S232S 0.12 TCGA-97-7552-01 8 94767313 94767313 C A TMEM67 Silent p.I57I 0.10 TCGA-97-7552-01 9 2039803 2039803 G A SMARCA2 Silent p.Q231Q 0.33 TCGA-97-7552-01 9 2039811 2039811 A C SMARCA2 Missense_Mutation p.Q234P 0.30 benign(0) TCGA-97-7552-01 X 36117961 36117961 C T CHDC2 Missense_Mutation p.R273W 0.22 deleterious(0.02) benign(0.15) TCGA-97-7552-01 X 70343061 70343061 G A MED12 Silent p.A534A 0.19 TCGA-97-7553-01 10 115609461 115609461 G T DCLRE1A Missense_Mutation p.P468H 0.15 deleterious(0.03) benign(0.023) TCGA-97-7553-01 10 51889283 51889283 A T FAM21A Silent p.G1064G 0.33 TCGA-97-7553-01 11 55681686 55681713 CCTTGTACCGATCAAAGGCCATCACTGA - OR5W2 Frame_Shift_Del p.S116Pfs*21 0.14 TCGA-97-7553-01 11 58979414 58979414 G C MPEG1 Missense_Mutation p.P309A 0.11 deleterious(0) probably_damaging(0.978) TCGA-97-7553-01 11 58979536 58979536 G T MPEG1 Nonsense_Mutation p.S268* 0.10 TCGA-97-7553-01 11 60183610 60183610 C A MS4A14 Missense_Mutation p.T423K 0.14 tolerated(0.06) possibly_damaging(0.563) TCGA-97-7553-01 11 66130941 66130941 G A SLC29A2 Missense_Mutation p.A446V 0.16 deleterious(0) probably_damaging(0.996) TCGA-97-7553-01 11 73950234 73950240 AGGAAGA - PPME1 Frame_Shift_Del p.E257Kfs*10 0.13 TCGA-97-7553-01 12 12336938 12336951 CCAGGAGTTTGACC - LRP6 Frame_Shift_Del p.V314Efs*60 0.13 TCGA-97-7553-01 12 247991 247991 G A IQSEC3 Missense_Mutation p.V488I 0.29 deleterious(0.01) probably_damaging(0.993) TCGA-97-7553-01 12 4554746 4554746 C T FGF6 5'UTR 0.14 TCGA-97-7553-01 12 54910732 54910732 C T NCKAP1L Silent p.L351L 0.08 TCGA-97-7553-01 13 35517094 35517094 G T NBEA Missense_Mutation p.R46M 0.21 tolerated_low_confidence(0.23) benign(0.047) TCGA-97-7553-01 13 48937094 48937094 G A RB1 Splice_Site p.X287_splice 0.09 TCGA-97-7553-01 13 49906199 49906199 G A CAB39L Missense_Mutation p.H240Y 0.05 tolerated(0.05) probably_damaging(0.917) TCGA-97-7553-01 14 23445977 23445977 C A AJUBA Intron 0.14 TCGA-97-7553-01 16 25258540 25258557 CTCCATGTTTTTCCTGCA - ZKSCAN2 In_Frame_Del p.S320_W325del 0.21 TCGA-97-7553-01 16 3304702 3304702 G A MEFV Silent p.D122D 0.19 TCGA-97-7553-01 17 29665755 29665756 - A NF1 Nonsense_Mutation p.Y2285* 0.17 TCGA-97-7553-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.14 deleterious(0) probably_damaging(0.997) TCGA-97-7553-01 18 77659126 77659126 C A KCNG2 Silent p.S237S 0.16 TCGA-97-7553-01 19 1800400 1800400 C T ATP8B3 Missense_Mutation p.G401S 0.15 tolerated(0.16) benign(0.126) TCGA-97-7553-01 19 52090627 52090627 C A ZNF175 Nonsense_Mutation p.S348* 0.16 TCGA-97-7553-01 19 55831513 55831513 C A TMEM150B Missense_Mutation p.R73L 0.15 deleterious(0) probably_damaging(0.999) TCGA-97-7553-01 19 56693610 56693610 G A GALP Nonsense_Mutation p.W69* 0.13 TCGA-97-7553-01 19 8660968 8660968 G A ADAMTS10 Silent p.T442T 0.16 TCGA-97-7553-01 1 113057555 113057555 G A WNT2B Missense_Mutation p.R81Q 0.15 tolerated(0.23) benign(0.103) TCGA-97-7553-01 1 169698730 169698730 G C SELE Missense_Mutation p.T267S 0.14 tolerated(0.21) benign(0.173) TCGA-97-7553-01 1 176857225 176857225 G A ASTN1 Missense_Mutation p.A1019V 0.04 deleterious(0) probably_damaging(0.996) TCGA-97-7553-01 1 1848605 1848605 G A CALML6 Silent p.T173T 0.11 TCGA-97-7553-01 1 200965516 200965516 C A KIF21B Missense_Mutation p.M695I 0.17 tolerated(0.09) benign(0.02) TCGA-97-7553-01 1 67263829 67263829 C T INSL5 Missense_Mutation p.R92H 0.07 tolerated(0.56) benign(0.001) TCGA-97-7553-01 1 9416188 9416188 G T SPSB1 Missense_Mutation p.V80L 0.14 deleterious(0) possibly_damaging(0.693) TCGA-97-7553-01 20 20349683 20349683 G A INSM1 Missense_Mutation p.G258R 0.16 deleterious(0.01) probably_damaging(0.953) TCGA-97-7553-01 21 45861686 45861686 G A TRPM2 Missense_Mutation p.G1500R 0.35 deleterious(0.01) possibly_damaging(0.66) TCGA-97-7553-01 2 241066016 241066016 C T MYEOV2 Silent p.G241G 0.15 TCGA-97-7553-01 2 29225560 29225560 G T FAM179A Missense_Mutation p.D196Y 0.16 deleterious(0) probably_damaging(0.979) TCGA-97-7553-01 3 152132832 152132832 A - MBNL1 Frame_Shift_Del p.M93Wfs*10 0.22 TCGA-97-7553-01 3 184049748 184049748 C T EIF4G1 Nonsense_Mutation p.R1505* 0.04 TCGA-97-7553-01 3 57132270 57132270 G A IL17RD Silent p.D487D 0.08 TCGA-97-7553-01 4 128861025 128861025 C T MFSD8 Silent p.L227L 0.10 TCGA-97-7553-01 5 150922824 150922824 A G FAT2 Missense_Mutation p.Y2622H 0.16 probably_damaging(1) TCGA-97-7553-01 6 38224278 38224278 T C BTBD9 Missense_Mutation p.D490G 0.19 deleterious(0.03) benign(0.071) TCGA-97-7553-01 6 40359735 40359735 C A LRFN2 Missense_Mutation p.G773W 0.15 deleterious(0) probably_damaging(0.921) TCGA-97-7553-01 6 45390272 45390272 C G RUNX2 Intron 0.27 TCGA-97-7553-01 6 56566691 56566691 G A DST Missense_Mutation p.R106C 0.12 possibly_damaging(0.854) TCGA-97-7553-01 6 7581318 7581318 A T DSP Missense_Mutation p.D1632V 0.08 benign(0.268) TCGA-97-7553-01 7 100391521 100391521 C T ZAN Intron 0.11 TCGA-97-7553-01 7 12692267 12692269 TCA - SCIN In_Frame_Del p.I694del 0.21 TCGA-97-7553-01 7 150845685 150845685 G A GBX1 Silent p.A361A 0.04 TCGA-97-7553-01 7 48007448 48007448 G A HUS1 Nonsense_Mutation p.Q239* 0.13 TCGA-97-7553-01 8 140631199 140631199 T C KCNK9 Missense_Mutation p.I143V 0.11 tolerated(1) benign(0.001) TCGA-97-7553-01 8 22442336 22442336 C G PDLIM2 Missense_Mutation p.S333C 0.15 deleterious(0.01) probably_damaging(0.982) TCGA-97-7553-01 8 22442594 22442594 C T PDLIM2 Missense_Mutation p.S377F 0.15 deleterious(0.01) possibly_damaging(0.664) TCGA-97-7553-01 8 71570008 71570008 A C LACTB2 Silent p.T132T 0.06 TCGA-97-7553-01 8 77616928 77616928 G T ZFHX4 Missense_Mutation p.G202V 0.12 probably_damaging(0.979) TCGA-97-7553-01 8 92033563 92033563 C T TMEM55A Missense_Mutation p.R59H 0.06 deleterious(0) possibly_damaging(0.781) TCGA-97-7553-01 9 16870675 16870675 C A BNC2 5'UTR 0.14 TCGA-97-7554-01 10 100481549 100481549 A G HPSE2 Missense_Mutation p.V274A 0.21 deleterious(0) benign(0.243) TCGA-97-7554-01 10 104572996 104572996 C A WBP1L Missense_Mutation p.P334T 0.20 tolerated(0.08) benign(0.149) TCGA-97-7554-01 10 105110867 105110867 G A PCGF6 5'UTR 0.26 TCGA-97-7554-01 10 134219612 134219612 G T PWWP2B Silent p.T536T 0.38 TCGA-97-7554-01 10 135209744 135209744 G T RP11-108K14.8 Missense_Mutation p.M90I 0.38 tolerated(0.14) benign(0.05) TCGA-97-7554-01 10 31138896 31138896 A G ZNF438 Silent p.C146C 0.09 TCGA-97-7554-01 10 34399947 34399947 A C PARD3 3'UTR 0.29 TCGA-97-7554-01 10 37506637 37506637 A T ANKRD30A Missense_Mutation p.Q977L 0.23 deleterious(0.04) benign(0.403) TCGA-97-7554-01 10 5258743 5258743 G A AKR1C4 Missense_Mutation p.V306I 0.19 tolerated(0.44) benign(0) TCGA-97-7554-01 10 5791121 5791121 G C FAM208B Missense_Mutation p.V1913L 0.28 deleterious(0.01) possibly_damaging(0.475) TCGA-97-7554-01 10 62149354 62149354 C A ANK3 5'UTR 0.14 TCGA-97-7554-01 10 6553016 6553016 C T PRKCQ Missense_Mutation p.V87M 0.17 tolerated(0.09) benign(0.053) TCGA-97-7554-01 10 73558329 73558329 T A CDH23 Missense_Mutation p.S110T 0.25 tolerated(0.12) benign(0.063) TCGA-97-7554-01 10 82111703 82111703 T C DYDC1 Missense_Mutation p.Q68R 0.25 tolerated(0.84) benign(0.006) TCGA-97-7554-01 10 84733574 84733574 G C NRG3 Missense_Mutation p.A439P 0.31 tolerated(0.12) possibly_damaging(0.742) TCGA-97-7554-01 10 87628790 87628790 C A GRID1 Nonsense_Mutation p.E310* 0.31 TCGA-97-7554-01 10 90672641 90672641 G T STAMBPL1 Intron 0.31 TCGA-97-7554-01 10 95116586 95116586 T C MYOF Missense_Mutation p.D1047G 0.29 tolerated(0.29) benign(0.005) TCGA-97-7554-01 10 96827198 96827198 T A CYP2C8 Intron 0.23 TCGA-97-7554-01 11 101833442 101833442 A G KIAA1377 Missense_Mutation p.H559R 0.27 deleterious(0.05) possibly_damaging(0.53) TCGA-97-7554-01 11 1025222 1025222 C T MUC6 Missense_Mutation p.R982K 0.28 unknown(0) TCGA-97-7554-01 11 103182692 103182692 G T DYNC2H1 Missense_Mutation p.R3867L 0.17 possibly_damaging(0.462) TCGA-97-7554-01 11 10791812 10791812 A G CTR9 Missense_Mutation p.Y722C 0.15 deleterious(0.03) possibly_damaging(0.84) TCGA-97-7554-01 11 113264300 113264300 G T ANKK1 Missense_Mutation p.G95C 0.23 deleterious(0) probably_damaging(0.991) TCGA-97-7554-01 11 113631271 113631271 C A ZW10 Missense_Mutation p.E128D 0.23 tolerated(0.06) benign(0.143) TCGA-97-7554-01 11 119548513 119548513 C A PVRL1 Missense_Mutation p.G162V 0.31 tolerated(0.17) possibly_damaging(0.884) TCGA-97-7554-01 11 124121124 124121124 G T OR8G1 Missense_Mutation p.R234S 0.13 deleterious_low_confidence(0) probably_damaging(0.924) TCGA-97-7554-01 11 125542425 125542425 G T ACRV1 3'UTR 0.44 TCGA-97-7554-01 11 1272071 1272071 C A MUC5B Missense_Mutation p.T4654N 0.14 unknown(0) TCGA-97-7554-01 11 130319110 130319110 C T ADAMTS15 Missense_Mutation p.T81I 0.28 tolerated(1) benign(0.004) TCGA-97-7554-01 11 1466580 1466580 G A BRSK2 Missense_Mutation p.R336H 0.11 tolerated(0.19) benign(0.118) TCGA-97-7554-01 11 15267485 15267485 T C INSC Missense_Mutation p.C547R 0.20 deleterious(0.02) benign(0.207) TCGA-97-7554-01 11 17419927 17419927 G A ABCC8 Missense_Mutation p.L1238F 0.07 deleterious(0) benign(0.122) TCGA-97-7554-01 11 18159074 18159074 G T MRGPRX3 Missense_Mutation p.G109C 0.19 deleterious(0) probably_damaging(0.949) TCGA-97-7554-01 11 18159075 18159075 G T MRGPRX3 Missense_Mutation p.G109V 0.19 deleterious(0) probably_damaging(0.993) TCGA-97-7554-01 11 18421090 18421090 G T LDHA Missense_Mutation p.G109V 0.16 deleterious(0) probably_damaging(0.974) TCGA-97-7554-01 11 19077263 19077263 C A MRGPRX2 Silent p.V229V 0.35 TCGA-97-7554-01 11 1955808 1955808 C A TNNT3 Silent p.A171A 0.29 TCGA-97-7554-01 11 26463584 26463584 C A ANO3 Missense_Mutation p.L56I 0.23 tolerated_low_confidence(0.25) benign(0.071) TCGA-97-7554-01 11 30034191 30034191 C A KCNA4 Missense_Mutation p.G12V 0.22 deleterious_low_confidence(0) unknown(0) TCGA-97-7554-01 11 31312234 31312234 T A DCDC1 Missense_Mutation p.D307V 0.15 deleterious(0.04) possibly_damaging(0.736) TCGA-97-7554-01 11 44956479 44956479 T A TP53I11 Missense_Mutation p.I176F 0.27 tolerated(0.09) benign(0.002) TCGA-97-7554-01 11 46406886 46406886 C A CHRM4 Missense_Mutation p.A408S 0.37 deleterious(0) probably_damaging(0.998) TCGA-97-7554-01 11 4967808 4967808 G T OR51A4 Missense_Mutation p.Q175K 0.13 deleterious(0.01) benign(0.216) TCGA-97-7554-01 11 4967809 4967809 G T OR51A4 Missense_Mutation p.N174K 0.14 deleterious(0.02) benign(0.014) TCGA-97-7554-01 11 4968008 4968008 C A OR51A4 Missense_Mutation p.G108V 0.09 tolerated(0.45) benign(0.098) TCGA-97-7554-01 11 51515557 51515557 C A OR4C46 Missense_Mutation p.F92L 0.29 deleterious_low_confidence(0.04) benign(0.048) TCGA-97-7554-01 11 5364119 5364119 G A OR51B5 Silent p.I212I 0.10 TCGA-97-7554-01 11 55038196 55038196 G T TRIM48 3'UTR 0.14 TCGA-97-7554-01 11 55063008 55063008 G - TRIM51HP RNA 0.16 TCGA-97-7554-01 11 55322784 55322784 G T OR4C15 Missense_Mutation p.L334F 0.20 tolerated_low_confidence(0.05) benign(0.079) TCGA-97-7554-01 11 55563449 55563449 C A OR5D14 Missense_Mutation p.Q140K 0.18 deleterious(0.04) benign(0.04) TCGA-97-7554-01 11 55735071 55735071 A T OR10AG1 Missense_Mutation p.V290E 0.17 tolerated(0.43) benign(0.004) TCGA-97-7554-01 11 55944484 55944484 C A OR5J2 Missense_Mutation p.L131I 0.22 deleterious(0.02) benign(0.126) TCGA-97-7554-01 11 56230251 56230251 G T OR5M9 Silent p.L209L 0.34 TCGA-97-7554-01 11 5776415 5776415 G C OR52N4 Missense_Mutation p.A149P 0.28 deleterious(0) possibly_damaging(0.739) TCGA-97-7554-01 11 57798435 57798435 A T OR6Q1 Missense_Mutation p.Y4F 0.23 tolerated_low_confidence(0.68) benign(0.01) TCGA-97-7554-01 11 5968677 5968677 C A OR56A3 Missense_Mutation p.P34H 0.45 deleterious(0) possibly_damaging(0.896) TCGA-97-7554-01 11 60163973 60163973 C A MS4A14 5'UTR 0.25 TCGA-97-7554-01 11 61295448 61295448 C T SYT7 Silent p.L262L 0.09 TCGA-97-7554-01 11 62123819 62123819 A G ASRGL1 Silent p.T71T 0.31 TCGA-97-7554-01 11 65733831 65733831 G T SART1 Missense_Mutation p.R331L 0.42 deleterious(0.01) benign(0.219) TCGA-97-7554-01 11 66311271 66311271 C T ZDHHC24 Missense_Mutation p.V155M 0.13 deleterious(0.03) probably_damaging(0.952) TCGA-97-7554-01 11 6648047 6648047 C A DCHS1 Missense_Mutation p.A2075S 0.13 deleterious(0.01) benign(0.099) TCGA-97-7554-01 11 6662271 6662271 G T DCHS1 Silent p.R192R 0.30 TCGA-97-7554-01 11 67059113 67059113 G T ANKRD13D Missense_Mutation p.R146L 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-97-7554-01 11 6898303 6898303 G T OR10A4 Missense_Mutation p.C142F 0.23 tolerated(0.12) benign(0.311) TCGA-97-7554-01 11 71293801 71293801 C G KRTAP5-11 Missense_Mutation p.C28S 0.03 deleterious_low_confidence(0.01) unknown(0) TCGA-97-7554-01 11 76506887 76506887 C T TSKU Missense_Mutation p.S76L 0.23 deleterious(0) probably_damaging(0.999) TCGA-97-7554-01 11 76833670 76833670 C A CAPN5 Nonsense_Mutation p.S551* 0.36 TCGA-97-7554-01 11 82868580 82868580 C A PCF11 Missense_Mutation p.S33R 0.10 deleterious(0) probably_damaging(0.987) TCGA-97-7554-01 12 101598296 101598296 G A SLC5A8 Silent p.V133V 0.33 TCGA-97-7554-01 12 102591417 102591417 C T PMCH Silent p.L44L 0.20 TCGA-97-7554-01 12 111785481 111785481 C A CUX2 Silent p.T1271T 0.21 TCGA-97-7554-01 12 113534535 113534535 A T DTX1 Missense_Mutation p.I552F 0.22 tolerated(0.17) possibly_damaging(0.76) TCGA-97-7554-01 12 114386693 114386693 C A RBM19 Silent p.R407R 0.29 TCGA-97-7554-01 12 120135562 120135562 C T CIT Silent p.A1928A 0.23 TCGA-97-7554-01 12 21358833 21358833 C A SLCO1B1 Missense_Mutation p.P455T 0.31 tolerated(0.3) possibly_damaging(0.734) TCGA-97-7554-01 12 21757624 21757624 G A GYS2 5'UTR 0.27 TCGA-97-7554-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.25 deleterious(0) possibly_damaging(0.479) TCGA-97-7554-01 12 29464033 29464033 G C FAR2 Missense_Mutation p.V281L 0.20 deleterious(0.04) possibly_damaging(0.772) TCGA-97-7554-01 12 40013091 40013091 C A ABCD2 Silent p.L109L 0.20 TCGA-97-7554-01 12 50029645 50029645 G T PRPF40B Missense_Mutation p.R432L 0.32 deleterious(0) probably_damaging(0.978) TCGA-97-7554-01 12 55725826 55725826 C A OR6C3 Silent p.A114A 0.16 TCGA-97-7554-01 12 58018651 58018651 C G SLC26A10 Silent p.L410L 0.20 TCGA-97-7554-01 12 58139966 58139966 T A TSPAN31 Missense_Mutation p.I80N 0.14 deleterious(0) probably_damaging(0.942) TCGA-97-7554-01 12 60168655 60168655 C G SLC16A7 Silent p.S193S 0.14 TCGA-97-7554-01 12 64195983 64195983 T A TMEM5 Missense_Mutation p.L181I 0.19 deleterious(0) probably_damaging(0.996) TCGA-97-7554-01 12 8325187 8325187 C A ZNF705A 5'UTR 0.17 TCGA-97-7554-01 12 91502264 91502264 G T LUM Missense_Mutation p.H165N 0.19 tolerated(0.28) benign(0.008) TCGA-97-7554-01 12 9230301 9230301 A G A2M Missense_Mutation p.I1091T 0.16 deleterious(0) benign(0.314) TCGA-97-7554-01 12 93100327 93100327 G T C12orf74 5'UTR 0.22 TCGA-97-7554-01 12 94976286 94976286 C T TMCC3 Missense_Mutation p.S36N 0.18 tolerated(0.17) benign(0.445) TCGA-97-7554-01 13 114781695 114781695 C A RASA3 Missense_Mutation p.G420V 0.25 deleterious(0.03) benign(0.006) TCGA-97-7554-01 13 25899149 25899149 C T NUPL1 Missense_Mutation p.A325V 0.08 deleterious(0) possibly_damaging(0.898) TCGA-97-7554-01 13 27259977 27259977 G A WASF3 Missense_Mutation p.D502N 0.17 deleterious(0) unknown(0) TCGA-97-7554-01 13 28882994 28882994 T A FLT1 Missense_Mutation p.T1236S 0.20 tolerated(0.38) benign(0.021) TCGA-97-7554-01 13 32907344 32907344 G T BRCA2 Missense_Mutation p.A577S 0.17 tolerated(0.39) benign(0.012) TCGA-97-7554-01 13 38166303 38166303 T A POSTN Splice_Site p.X73_splice 0.24 TCGA-97-7554-01 14 21486164 21486164 G - NDRG2 Frame_Shift_Del p.L311Cfs*12 0.12 TCGA-97-7554-01 14 23587927 23587927 C T CEBPE Missense_Mutation p.R125Q 0.07 tolerated(0.05) possibly_damaging(0.457) TCGA-97-7554-01 14 31855777 31855777 G A HEATR5A Silent p.A105A 0.05 TCGA-97-7554-01 14 52188672 52188672 G A FRMD6 Missense_Mutation p.E456K 0.29 tolerated(0.06) benign(0.025) TCGA-97-7554-01 14 52505539 52505539 C A NID2 Missense_Mutation p.R728L 0.21 deleterious(0) probably_damaging(0.988) TCGA-97-7554-01 14 55411173 55411173 G A WDHD1 Silent p.F1022F 0.26 TCGA-97-7554-01 14 55643878 55643878 C T DLGAP5 Silent p.L317L 0.33 TCGA-97-7554-01 14 71445031 71445031 A T PCNX Silent p.T659T 0.16 TCGA-97-7554-01 14 88477216 88477216 C G GPR65 Missense_Mutation p.Q9E 0.10 tolerated(0.23) benign(0.01) TCGA-97-7554-01 14 92600367 92600367 G T CPSF2 Missense_Mutation p.Q54H 0.25 tolerated(0.11) benign(0.275) TCGA-97-7554-01 14 94063707 94063707 G T UNC79 Nonsense_Mutation p.E888* 0.18 TCGA-97-7554-01 15 20662843 20662843 C A HERC2P3 Intron 0.13 TCGA-97-7554-01 15 22369217 22369217 G T OR4M2 Silent p.L214L 0.09 TCGA-97-7554-01 15 25425505 25425505 G T SNORD115-6 5'Flank 0.42 TCGA-97-7554-01 15 27572044 27572044 G T GABRG3 Missense_Mutation p.S120I 0.30 deleterious(0) probably_damaging(0.998) TCGA-97-7554-01 15 34072493 34072493 C A RYR3 Silent p.R3073R 0.33 TCGA-97-7554-01 15 41820068 41820068 G A RPAP1 Missense_Mutation p.P473L 0.07 tolerated(0.21) probably_damaging(0.997) TCGA-97-7554-01 15 41820069 41820069 G T RPAP1 Missense_Mutation p.P473T 0.07 deleterious(0.03) probably_damaging(0.997) TCGA-97-7554-01 15 41820194 41820194 G C RPAP1 Missense_Mutation p.A431G 0.16 tolerated(0.21) benign(0.001) TCGA-97-7554-01 15 41821712 41821712 G A RPAP1 Silent p.L372L 0.29 TCGA-97-7554-01 15 41822100 41822100 G A RPAP1 Nonsense_Mutation p.Q341* 0.24 TCGA-97-7554-01 15 41822157 41822157 G A RPAP1 Missense_Mutation p.P322S 0.24 tolerated(0.07) benign(0.016) TCGA-97-7554-01 15 41823307 41823307 G A RPAP1 Missense_Mutation p.S286F 0.25 deleterious(0.03) benign(0.006) TCGA-97-7554-01 15 41823309 41823309 G A RPAP1 Silent p.P285P 0.25 TCGA-97-7554-01 15 41823359 41823359 G A RPAP1 Nonsense_Mutation p.Q269* 0.23 TCGA-97-7554-01 15 41823373 41823373 G C RPAP1 Missense_Mutation p.S264C 0.24 deleterious(0.02) probably_damaging(0.977) TCGA-97-7554-01 15 45657019 45657019 G A GATM Missense_Mutation p.P340S 0.33 tolerated(0.15) possibly_damaging(0.751) TCGA-97-7554-01 15 50540498 50540498 G A HDC Missense_Mutation p.L362F 0.25 deleterious(0) probably_damaging(0.999) TCGA-97-7554-01 15 50899520 50899520 T C TRPM7 Silent p.A862A 0.29 TCGA-97-7554-01 15 63988517 63988517 G A HERC1 Nonsense_Mutation p.Q1643* 0.23 TCGA-97-7554-01 15 75586280 75586280 G T GOLGA6D Missense_Mutation p.S574I 0.16 tolerated(0.07) possibly_damaging(0.838) TCGA-97-7554-01 15 88690601 88690601 C A NTRK3 Silent p.S143S 0.31 TCGA-97-7554-01 15 93558024 93558024 C T CHD2 Silent p.T1597T 0.06 TCGA-97-7554-01 16 19883154 19883154 C A GPRC5B Missense_Mutation p.M338I 0.14 deleterious(0.04) probably_damaging(0.958) TCGA-97-7554-01 16 23703537 23703537 G T ERN2 Missense_Mutation p.P787H 0.47 tolerated(0.46) benign(0.006) TCGA-97-7554-01 16 23703538 23703538 G T ERN2 Missense_Mutation p.P787T 0.47 tolerated(0.34) benign(0.006) TCGA-97-7554-01 16 28604843 28604843 T C SULT1A2 Missense_Mutation p.Y140C 0.52 deleterious(0) probably_damaging(0.995) TCGA-97-7554-01 16 2903323 2903323 G A PRSS22 Missense_Mutation p.S242F 0.30 deleterious(0) probably_damaging(0.98) TCGA-97-7554-01 16 3187242 3187255 CAGGTTGAAGCCGA - ZNF213 5'UTR 0.21 TCGA-97-7554-01 16 32264789 32264789 G C TP53TG3D Missense_Mutation p.D39H 0.33 deleterious_low_confidence(0.02) probably_damaging(0.934) TCGA-97-7554-01 16 55703493 55703493 G A SLC6A2 Silent p.P97P 0.06 TCGA-97-7554-01 16 58608961 58608961 C T CNOT1 Missense_Mutation p.E593K 0.10 deleterious(0.01) probably_damaging(0.983) TCGA-97-7554-01 16 67997387 67997387 C T SLC12A4 Intron 0.45 TCGA-97-7554-01 16 68014139 68014139 G A DPEP3 Silent p.L74L 0.45 TCGA-97-7554-01 16 72153719 72153719 C A PMFBP1 Intron 0.07 TCGA-97-7554-01 16 74750356 74750356 G A FA2H Missense_Mutation p.L310F 0.39 tolerated(0.05) benign(0.033) TCGA-97-7554-01 16 84691417 84691417 G T KLHL36 Missense_Mutation p.R335L 0.29 deleterious(0.01) possibly_damaging(0.713) TCGA-97-7554-01 16 88945811 88945811 G C CBFA2T3 Missense_Mutation p.S510W 0.36 deleterious(0.01) possibly_damaging(0.858) TCGA-97-7554-01 16 89258091 89258091 C A CDH15 Silent p.T468T 0.38 TCGA-97-7554-01 17 16068441 16068441 G A NCOR1 Missense_Mutation p.S157F 0.06 probably_damaging(0.983) TCGA-97-7554-01 17 27038717 27038717 C A PROCA1 5'UTR 0.37 TCGA-97-7554-01 17 29857480 29857480 G T RAB11FIP4 Missense_Mutation p.R597L 0.14 deleterious(0) probably_damaging(0.982) TCGA-97-7554-01 17 32904574 32904574 G T C17orf102 Missense_Mutation p.A159D 0.24 deleterious_low_confidence(0.01) benign(0.017) TCGA-97-7554-01 17 33323635 33323635 G C LIG3 Missense_Mutation p.D596H 0.12 deleterious(0) probably_damaging(0.999) TCGA-97-7554-01 17 33323660 33323660 G C LIG3 Missense_Mutation p.S604T 0.09 tolerated(0.27) possibly_damaging(0.665) TCGA-97-7554-01 17 39579095 39579095 C A KRT37 Missense_Mutation p.D223Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-97-7554-01 17 39645847 39645847 G T KRT36 Missense_Mutation p.N90K 0.20 deleterious(0.01) possibly_damaging(0.541) TCGA-97-7554-01 17 41234512 41234512 C A BRCA1 Silent p.G1422G 0.26 TCGA-97-7554-01 17 41234513 41234513 C A BRCA1 Missense_Mutation p.G1422V 0.27 deleterious(0) probably_damaging(0.978) TCGA-97-7554-01 17 55950963 55950963 C A CUEDC1 Missense_Mutation p.D194Y 0.27 deleterious(0) possibly_damaging(0.707) TCGA-97-7554-01 17 57046944 57046944 G T PPM1E Silent p.G276G 0.29 TCGA-97-7554-01 17 61988510 61988510 G T CSHL1 Intron 0.25 TCGA-97-7554-01 17 70117637 70117637 C A SOX9 Nonsense_Mutation p.C35* 0.20 TCGA-97-7554-01 17 71334933 71334933 C A SDK2 Missense_Mutation p.E2104D 0.26 tolerated(0.4) possibly_damaging(0.539) TCGA-97-7554-01 17 72346894 72346894 G A KIF19 Silent p.Q479Q 0.32 TCGA-97-7554-01 17 72356255 72356255 G T BTBD17 Missense_Mutation p.A72E 0.28 deleterious(0.04) benign(0.319) TCGA-97-7554-01 17 73240717 73240717 T G GGA3 Missense_Mutation p.K95Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-97-7554-01 17 7577536 7577536 T A TP53 Missense_Mutation p.R249W 0.45 deleterious(0.02) possibly_damaging(0.698) TCGA-97-7554-01 17 77758716 77758716 G T CBX2 Missense_Mutation p.D492Y 0.34 deleterious(0) probably_damaging(1) TCGA-97-7554-01 17 78931471 78931471 A T RPTOR Missense_Mutation p.S1140C 0.15 tolerated(0.15) benign(0.001) TCGA-97-7554-01 17 79219556 79219556 G A SLC38A10 Missense_Mutation p.R1054W 0.29 deleterious(0) probably_damaging(1) TCGA-97-7554-01 17 8732150 8732150 C G PIK3R6 Silent p.G349G 0.30 TCGA-97-7554-01 18 11885721 11885721 A C MPPE1 Missense_Mutation p.V321G 0.12 deleterious(0) probably_damaging(0.953) TCGA-97-7554-01 18 21057143 21057143 G T RIOK3 Missense_Mutation p.V419F 0.28 deleterious(0.01) probably_damaging(0.928) TCGA-97-7554-01 18 21485527 21485527 G T LAMA3 Silent p.L2219L 0.34 TCGA-97-7554-01 18 21512237 21512237 G A LAMA3 Missense_Mutation p.S2897N 0.30 probably_damaging(0.952) TCGA-97-7554-01 18 21698196 21698196 G T TTC39C Missense_Mutation p.V396F 0.10 deleterious(0) probably_damaging(0.972) TCGA-97-7554-01 18 28648987 28648987 G A DSC2 Missense_Mutation p.S794L 0.14 tolerated(1) benign(0.001) TCGA-97-7554-01 18 30093540 30093540 C T WBP11P1 RNA 0.13 TCGA-97-7554-01 18 33775249 33775249 A T MOCOS Missense_Mutation p.T58S 0.39 deleterious(0.01) probably_damaging(0.984) TCGA-97-7554-01 18 40503541 40503541 C T RIT2 Missense_Mutation p.R141H 0.11 deleterious(0.05) benign(0.03) TCGA-97-7554-01 18 42530368 42530368 G T SETBP1 Missense_Mutation p.V355F 0.16 tolerated(0.11) possibly_damaging(0.518) TCGA-97-7554-01 18 56203989 56203989 G T ALPK2 Missense_Mutation p.Q1144K 0.06 tolerated(0.25) benign(0.023) TCGA-97-7554-01 18 59217383 59217383 C A CDH20 Missense_Mutation p.S607R 0.34 tolerated(0.19) benign(0.155) TCGA-97-7554-01 18 71796748 71796748 A G FBXO15 Missense_Mutation p.V226A 0.15 deleterious(0.05) benign(0.037) TCGA-97-7554-01 18 74091856 74091856 C A ZNF516 Missense_Mutation p.R738S 0.60 deleterious(0.02) benign(0.015) TCGA-97-7554-01 18 9255152 9255152 T C ANKRD12 Silent p.H629H 0.07 TCGA-97-7554-01 19 1055905 1055905 G T ABCA7 Splice_Site p.X1402_splice 0.60 TCGA-97-7554-01 19 14515282 14515282 T C CD97 Missense_Mutation p.C513R 0.40 deleterious(0) probably_damaging(0.999) TCGA-97-7554-01 19 15651465 15651465 G T CYP4F22 Missense_Mutation p.E292D 0.40 tolerated(1) benign(0.016) TCGA-97-7554-01 19 17313008 17313008 A G MYO9B Missense_Mutation p.T1578A 0.58 tolerated(0.81) benign(0.001) TCGA-97-7554-01 19 17955088 17955088 C A JAK3 Missense_Mutation p.D47Y 0.44 deleterious(0.01) possibly_damaging(0.838) TCGA-97-7554-01 19 18235560 18235560 G T MAST3 Missense_Mutation p.G323C 0.30 deleterious(0) probably_damaging(0.997) TCGA-97-7554-01 19 18235570 18235570 A T MAST3 Missense_Mutation p.K326M 0.31 deleterious(0) possibly_damaging(0.793) TCGA-97-7554-01 19 2037694 2037694 C A MKNK2 3'UTR 0.35 TCGA-97-7554-01 19 2037695 2037695 C A MKNK2 3'UTR 0.37 TCGA-97-7554-01 19 22271202 22271202 C A ZNF257 Missense_Mutation p.T217N 0.18 tolerated(0.16) benign(0.078) TCGA-97-7554-01 19 22586258 22586258 G T ZNF98 Nonsense_Mutation p.C29* 0.40 TCGA-97-7554-01 19 23299921 23299921 T A ZNF730 5'UTR 0.15 TCGA-97-7554-01 19 31040290 31040290 C A ZNF536 Missense_Mutation p.P1255H 0.30 tolerated_low_confidence(0.11) possibly_damaging(0.907) TCGA-97-7554-01 19 3207777 3207777 C A NCLN 3'UTR 0.66 TCGA-97-7554-01 19 33355045 33355045 C A SLC7A9 Missense_Mutation p.K145N 0.23 tolerated(0.4) benign(0.005) TCGA-97-7554-01 19 34818678 34818678 A T KIAA0355 Silent p.A283A 0.31 TCGA-97-7554-01 19 37854204 37854204 G - HKR1 Frame_Shift_Del p.R504Efs*9 0.10 TCGA-97-7554-01 19 38933001 38933001 G A RYR1 Missense_Mutation p.D60N 0.16 possibly_damaging(0.862) TCGA-97-7554-01 19 39038899 39038899 C T RYR1 Missense_Mutation p.R4041W 0.13 benign(0.01) TCGA-97-7554-01 19 41798236 41798237 - T HNRNPUL1 Frame_Shift_Ins p.L363Ffs*44 0.12 TCGA-97-7554-01 19 4292808 4292808 C T TMIGD2 Missense_Mutation p.G213R 0.54 tolerated(0.21) benign(0.001) TCGA-97-7554-01 19 44001416 44001416 C A PHLDB3 Missense_Mutation p.D227Y 0.21 deleterious(0) possibly_damaging(0.867) TCGA-97-7554-01 19 50475331 50475331 C A VRK3 3'Flank 0.31 TCGA-97-7554-01 19 51826942 51826942 G T IGLON5 Missense_Mutation p.R62L 0.25 deleterious(0.02) benign(0.397) TCGA-97-7554-01 19 52869860 52869860 G T ZNF610 Missense_Mutation p.G410V 0.14 tolerated(0.17) benign(0.063) TCGA-97-7554-01 19 52937242 52937242 T G ZNF534 Missense_Mutation p.F17C 0.29 deleterious(0) probably_damaging(0.98) TCGA-97-7554-01 19 53304938 53304938 T C ZNF28 Missense_Mutation p.M54V 0.46 tolerated(1) benign(0.003) TCGA-97-7554-01 19 54308698 54308698 C A NLRP12 Missense_Mutation p.K750N 0.16 tolerated(0.35) probably_damaging(0.958) TCGA-97-7554-01 19 54377348 54377348 G T MYADM Missense_Mutation p.A189S 0.17 tolerated(0.1) benign(0.222) TCGA-97-7554-01 19 54824394 54824394 C A LILRA5 5'UTR 0.60 TCGA-97-7554-01 19 55106637 55106637 A G LILRA1 Missense_Mutation p.H144R 0.14 tolerated(0.14) benign(0) TCGA-97-7554-01 19 55349047 55349047 T A KIR2DS4 Silent p.P29P 0.35 TCGA-97-7554-01 19 55445885 55445885 G A NLRP7 Missense_Mutation p.R815C 0.14 deleterious(0) benign(0.39) TCGA-97-7554-01 19 55450993 55450993 G T NLRP7 Silent p.L398L 0.26 TCGA-97-7554-01 19 55451569 55451569 G T NLRP7 Nonsense_Mutation p.Y206* 0.34 TCGA-97-7554-01 19 55751251 55751251 C A PPP6R1 Missense_Mutation p.W502C 0.26 deleterious(0) probably_damaging(1) TCGA-97-7554-01 19 56180848 56180848 G T U2AF2 Silent p.P361P 0.11 TCGA-97-7554-01 19 56538692 56538692 G A NLRP5 Missense_Mutation p.D365N 0.16 deleterious(0.03) possibly_damaging(0.728) TCGA-97-7554-01 19 56953937 56953937 G T ZNF667 Missense_Mutation p.P143T 0.08 deleterious(0.02) benign(0.016) TCGA-97-7554-01 19 57293363 57293363 T A ZIM2 Missense_Mutation p.R202W 0.10 deleterious(0.02) benign(0.344) TCGA-97-7554-01 19 57336106 57336106 G A PEG3 5'UTR 0.22 TCGA-97-7554-01 19 57647108 57647108 G C ZIM3 Missense_Mutation p.S199R 0.22 tolerated(0.16) benign(0) TCGA-97-7554-01 19 6772756 6772756 G A VAV1 5'UTR 0.56 TCGA-97-7554-01 19 8976586 8976586 G A MUC16 Silent p.S14130S 0.32 TCGA-97-7554-01 19 9578679 9578679 C T ZNF560 Missense_Mutation p.S315N 0.07 tolerated(0.78) benign(0.035) TCGA-97-7554-01 1 103449739 103449739 A T COL11A1 Silent p.L837L 0.40 TCGA-97-7554-01 1 11182094 11182094 C T MTOR Missense_Mutation p.R2251Q 0.15 deleterious(0) probably_damaging(0.992) TCGA-97-7554-01 1 116206606 116206606 G C VANGL1 Missense_Mutation p.A177P 0.15 deleterious(0) probably_damaging(0.975) TCGA-97-7554-01 1 12711243 12711243 C A AADACL4 Silent p.T90T 0.37 TCGA-97-7554-01 1 14107117 14107117 G T PRDM2 Missense_Mutation p.D943Y 0.29 possibly_damaging(0.511) TCGA-97-7554-01 1 149907245 149907245 G C MTMR11 Missense_Mutation p.P91R 0.49 tolerated(0.24) possibly_damaging(0.569) TCGA-97-7554-01 1 152636901 152636901 G T LCE2D Missense_Mutation p.G107V 0.13 deleterious_low_confidence(0.02) unknown(0) TCGA-97-7554-01 1 152636902 152636902 G T LCE2D Silent p.G107G 0.13 TCGA-97-7554-01 1 154519884 154519884 G C TDRD10 Splice_Site p.X318_splice 0.11 TCGA-97-7554-01 1 156811916 156811916 C A INSRR Missense_Mutation p.V1129F 0.11 deleterious(0) probably_damaging(1) TCGA-97-7554-01 1 156876502 156876502 C A PEAR1 Silent p.P158P 0.49 TCGA-97-7554-01 1 158913591 158913591 T C PYHIN1 Silent p.N338N 0.31 TCGA-97-7554-01 1 159923135 159923135 T C SLAMF9 Missense_Mutation p.I119V 0.50 tolerated(0.43) benign(0.007) TCGA-97-7554-01 1 160616670 160616670 G C SLAMF1 Missense_Mutation p.S22R 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-97-7554-01 1 161049471 161049471 G A PVRL4 Silent p.N116N 0.10 TCGA-97-7554-01 1 162367061 162367061 G A SH2D1B 3'UTR 0.06 TCGA-97-7554-01 1 173569280 173569280 T A SLC9C2 Silent p.G68G 0.51 TCGA-97-7554-01 1 181479632 181479632 C A CACNA1E Missense_Mutation p.L96M 0.11 deleterious(0.02) possibly_damaging(0.665) TCGA-97-7554-01 1 183536055 183536055 C A NCF2 Missense_Mutation p.Q308H 0.43 deleterious(0.02) possibly_damaging(0.738) TCGA-97-7554-01 1 186324788 186324788 C A TPR Missense_Mutation p.E667D 0.14 benign(0.217) TCGA-97-7554-01 1 19180949 19180949 G T TAS1R2 Missense_Mutation p.R339S 0.18 deleterious(0.02) probably_damaging(0.955) TCGA-97-7554-01 1 19209835 19209835 C A ALDH4A1 Nonsense_Mutation p.E181* 0.40 TCGA-97-7554-01 1 19549300 19549300 C T EMC1 Missense_Mutation p.R802H 0.10 deleterious(0) probably_damaging(1) TCGA-97-7554-01 1 197026449 197026449 C T F13B Missense_Mutation p.D318N 0.11 tolerated(1) benign(0.001) TCGA-97-7554-01 1 201453779 201453779 C T CSRP1 3'UTR 0.25 TCGA-97-7554-01 1 202128594 202128594 G T PTPN7 Intron 0.46 TCGA-97-7554-01 1 204978720 204978721 - A NFASC Frame_Shift_Ins p.G1109Efs*44 0.14 TCGA-97-7554-01 1 204985633 204985633 C T NFASC Missense_Mutation p.T1230M 0.41 deleterious(0) unknown(0) TCGA-97-7554-01 1 211534059 211534059 T C TRAF5 Silent p.L187L 0.13 TCGA-97-7554-01 1 212553283 212553283 C T TMEM206 Missense_Mutation p.A259T 0.08 tolerated(0.1) possibly_damaging(0.774) TCGA-97-7554-01 1 214575100 214575100 T C PTPN14 Silent p.A199A 0.52 TCGA-97-7554-01 1 216420066 216420066 G T USH2A Silent p.T890T 0.10 TCGA-97-7554-01 1 216420067 216420067 G T USH2A Missense_Mutation p.T890N 0.10 benign(0.03) TCGA-97-7554-01 1 22416563 22416563 T A CDC42 Intron 0.33 TCGA-97-7554-01 1 224318265 224318265 T G FBXO28 Missense_Mutation p.V120G 0.47 deleterious(0) possibly_damaging(0.676) TCGA-97-7554-01 1 2288985 2288985 C T MORN1 Missense_Mutation p.G308R 0.24 tolerated(0.15) benign(0.391) TCGA-97-7554-01 1 236175324 236175324 T G NID1 Silent p.P808P 0.06 TCGA-97-7554-01 1 236881227 236881227 T A ACTN2 Missense_Mutation p.F66I 0.44 deleterious(0.01) possibly_damaging(0.768) TCGA-97-7554-01 1 237729937 237729937 A T RYR2 Silent p.A1095A 0.49 TCGA-97-7554-01 1 237813181 237813181 C T RYR2 Missense_Mutation p.A2506V 0.16 benign(0.057) TCGA-97-7554-01 1 237947313 237947313 C A RYR2 Missense_Mutation p.L4101I 0.45 probably_damaging(0.998) TCGA-97-7554-01 1 238049109 238049109 G C ZP4 Missense_Mutation p.P306R 0.52 deleterious(0.01) probably_damaging(0.998) TCGA-97-7554-01 1 241912881 241912881 C A WDR64 Missense_Mutation p.Q533K 0.36 deleterious(0.05) benign(0.348) TCGA-97-7554-01 1 242511458 242511458 C T PLD5 Missense_Mutation p.M92I 0.40 tolerated(0.39) benign(0.003) TCGA-97-7554-01 1 24768625 24768625 C T NIPAL3 Silent p.F81F 0.30 TCGA-97-7554-01 1 24768626 24768626 C T NIPAL3 Silent p.L82L 0.29 TCGA-97-7554-01 1 248059128 248059128 G A OR2W3 Silent p.Q80Q 0.14 TCGA-97-7554-01 1 248202247 248202247 C G OR2L2 Silent p.R226R 0.44 TCGA-97-7554-01 1 248308862 248308862 C G OR2M5 Missense_Mutation p.P138R 0.14 tolerated(1) benign(0.002) TCGA-97-7554-01 1 248512288 248512288 A T OR14C36 Missense_Mutation p.Y71F 0.17 tolerated(0.22) benign(0.165) TCGA-97-7554-01 1 248844746 248844746 A T OR14I1 Missense_Mutation p.I287K 0.13 deleterious(0) probably_damaging(0.996) TCGA-97-7554-01 1 26517187 26517187 G T CATSPER4 Silent p.G23G 0.26 TCGA-97-7554-01 1 3427376 3427376 C A MEGF6 Missense_Mutation p.R402L 0.34 deleterious(0) possibly_damaging(0.862) TCGA-97-7554-01 1 35227283 35227283 C A GJB4 Missense_Mutation p.A143D 0.27 deleterious(0.02) benign(0.234) TCGA-97-7554-01 1 3740027 3740027 C A CEP104 Nonsense_Mutation p.E822* 0.25 TCGA-97-7554-01 1 46726526 46726526 G C RAD54L Missense_Mutation p.R202P 0.17 deleterious(0) probably_damaging(0.979) TCGA-97-7554-01 1 70504765 70504765 A G LRRC7 Missense_Mutation p.I1048M 0.22 tolerated(0.25) benign(0.002) TCGA-97-7554-01 1 77510025 77510025 G T ST6GALNAC5 Missense_Mutation p.R133L 0.30 benign(0.007) TCGA-97-7554-01 1 85547055 85547055 G T WDR63 Missense_Mutation p.R81I 0.20 deleterious(0) probably_damaging(0.998) TCGA-97-7554-01 1 92733549 92733549 T A GLMN Missense_Mutation p.E340V 0.17 tolerated(0.1) benign(0.021) TCGA-97-7554-01 1 99771914 99771914 C A LPPR4 Missense_Mutation p.S547Y 0.28 deleterious(0) possibly_damaging(0.878) TCGA-97-7554-01 20 23614635 23614635 T A CST3 Missense_Mutation p.K120I 0.22 deleterious(0.01) benign(0.446) TCGA-97-7554-01 20 25056973 25056973 G T VSX1 Missense_Mutation p.P341H 0.15 tolerated(0.15) benign(0.143) TCGA-97-7554-01 20 40980762 40980762 C A PTPRT Missense_Mutation p.G575V 0.21 deleterious(0) probably_damaging(0.974) TCGA-97-7554-01 20 4842670 4842670 G T SLC23A2 Missense_Mutation p.N516K 0.26 deleterious(0) probably_damaging(0.996) TCGA-97-7554-01 20 48699190 48699190 T A UBE2V1 3'UTR 0.29 TCGA-97-7554-01 20 51870553 51870553 G T TSHZ2 Missense_Mutation p.V186F 0.17 tolerated(0.14) benign(0.007) TCGA-97-7554-01 20 56094353 56094353 G - CTCFL Frame_Shift_Del p.H279Tfs*13 0.18 TCGA-97-7554-01 20 61513243 61513243 C A DIDO1 Silent p.P1355P 0.28 TCGA-97-7554-01 21 30313665 30313666 - A LTN1 Frame_Shift_Ins p.L1499Ffs*13 0.40 TCGA-97-7554-01 21 30953768 30953768 C A GRIK1 Missense_Mutation p.G630V 0.55 tolerated(0.06) probably_damaging(0.951) TCGA-97-7554-01 21 31933445 31933445 C A KRTAP19-7 Missense_Mutation p.G55V 0.61 tolerated_low_confidence(0.09) unknown(0) TCGA-97-7554-01 21 31971160 31971160 C A KRTAP6-2 Missense_Mutation p.D12Y 0.65 unknown(0) TCGA-97-7554-01 21 34399437 34399437 G C OLIG2 Silent p.A89A 0.38 TCGA-97-7554-01 21 41459132 41459132 C A DSCAM Silent p.G1311G 0.07 TCGA-97-7554-01 21 46047279 46047279 C T KRTAP10-9 Missense_Mutation p.P64L 0.14 deleterious(0.03) unknown(0) TCGA-97-7554-01 21 47929244 47929244 C T DIP2A Missense_Mutation p.P287S 0.34 deleterious(0) probably_damaging(0.994) TCGA-97-7554-01 22 17472833 17472833 G - GAB4 Frame_Shift_Del p.R137Gfs*4 0.19 TCGA-97-7554-01 22 22893340 22893340 G T PRAME Missense_Mutation p.H65N 0.15 tolerated(0.09) possibly_damaging(0.668) TCGA-97-7554-01 22 36537770 36537770 C A APOL3 Silent p.A229A 0.09 TCGA-97-7554-01 22 37098411 37098411 C T CACNG2 Missense_Mutation p.G71R 0.24 deleterious(0.03) probably_damaging(0.928) TCGA-97-7554-01 22 37882095 37882095 G C MFNG Missense_Mutation p.L41V 0.22 tolerated(0.69) benign(0.011) TCGA-97-7554-01 22 41895792 41895792 G T ACO2 Silent p.A33A 0.16 TCGA-97-7554-01 22 45726535 45726535 G C FAM118A Missense_Mutation p.G192R 0.20 deleterious(0.02) possibly_damaging(0.701) TCGA-97-7554-01 2 130738066 130738066 T C RAB6C Silent p.N126N 0.30 TCGA-97-7554-01 2 133541593 133541593 G A NCKAP5 Missense_Mutation p.P931S 0.12 tolerated(0.31) benign(0.109) TCGA-97-7554-01 2 141806654 141806654 G A LRP1B Missense_Mutation p.H564Y 0.07 benign(0.152) TCGA-97-7554-01 2 142238100 142238100 G T LRP1B Missense_Mutation p.P70T 0.21 possibly_damaging(0.641) TCGA-97-7554-01 2 158178139 158178139 G T ERMN Missense_Mutation p.Q180K 0.39 tolerated(0.23) benign(0.407) TCGA-97-7554-01 2 158656003 158656003 C A ACVR1 Translation_Start_Site p.M1? 0.28 deleterious_low_confidence(0.02) benign(0.004) TCGA-97-7554-01 2 160673472 160673472 T C LY75-CD302 Missense_Mutation p.I1409V 0.50 tolerated(0.37) possibly_damaging(0.658) TCGA-97-7554-01 2 160833814 160833814 C A PLA2R1 Missense_Mutation p.W794C 0.34 deleterious(0) probably_damaging(1) TCGA-97-7554-01 2 179412568 179412568 A T TTN Missense_Mutation p.V31262E 0.11 TCGA-97-7554-01 2 182399575 182399575 C G ITGA4 Silent p.P972P 0.10 TCGA-97-7554-01 2 1842962 1842962 G A MYT1L Silent p.D1011D 0.08 TCGA-97-7554-01 2 189904256 189904257 - A COL5A2 Frame_Shift_Ins p.P1223Sfs*19 0.14 TCGA-97-7554-01 2 202755521 202755521 T C CDK15 Intron 0.18 TCGA-97-7554-01 2 231308915 231308915 A T SP100 Missense_Mutation p.N98I 0.14 deleterious(0) possibly_damaging(0.844) TCGA-97-7554-01 2 233406084 233406084 C A CHRNG Missense_Mutation p.N117K 0.10 deleterious(0.03) probably_damaging(0.997) TCGA-97-7554-01 2 234580712 234580712 G T UGT1A9 Silent p.V44V 0.17 TCGA-97-7554-01 2 238275811 238275811 G T COL6A3 Silent p.G1673G 0.26 TCGA-97-7554-01 2 28739673 28739673 A T PLB1 Splice_Site p.X19_splice 0.26 TCGA-97-7554-01 2 3598004 3598004 C A RNASEH1 Silent p.P156P 0.28 TCGA-97-7554-01 2 44548542 44548542 C A PREPL Missense_Mutation p.D713Y 0.19 deleterious(0) probably_damaging(0.984) TCGA-97-7554-01 2 45616508 45616508 C A SRBD1 Missense_Mutation p.V977L 0.26 deleterious(0.04) probably_damaging(0.923) TCGA-97-7554-01 2 60688990 60688990 G T BCL11A Missense_Mutation p.P353T 0.19 deleterious(0) probably_damaging(0.996) TCGA-97-7554-01 2 61575333 61575333 T C USP34 Missense_Mutation p.I653V 0.11 tolerated_low_confidence(0.47) benign(0.003) TCGA-97-7554-01 2 71300684 71300684 A G NAGK Missense_Mutation p.D226G 0.23 tolerated(0.17) benign(0.043) TCGA-97-7554-01 2 71886086 71886086 C T DYSF Nonsense_Mutation p.Q1612* 0.19 TCGA-97-7554-01 2 74307667 74307667 C T TET3 Silent p.I741I 0.15 TCGA-97-7554-01 2 79314699 79314699 G T REG1B Missense_Mutation p.L14M 0.21 deleterious(0.01) possibly_damaging(0.665) TCGA-97-7554-01 2 79348739 79348739 G A REG1A Missense_Mutation p.G39D 0.30 deleterious(0) possibly_damaging(0.843) TCGA-97-7554-01 2 79386464 79386464 T A REG3A Missense_Mutation p.Q23L 0.21 tolerated(0.1) benign(0.393) TCGA-97-7554-01 2 79878782 79878783 - A CTNNA2 Frame_Shift_Ins p.V35Gfs*15 0.23 TCGA-97-7554-01 2 95719202 95719202 G A MAL 3'UTR 0.26 TCGA-97-7554-01 3 10491287 10491287 G A ATP2B2 5'UTR 0.06 TCGA-97-7554-01 3 11067189 11067189 C A SLC6A1 Missense_Mutation p.R257S 0.16 deleterious(0) probably_damaging(0.961) TCGA-97-7554-01 3 114014612 114014612 C T TIGIT Silent p.T94T 0.20 TCGA-97-7554-01 3 121341270 121341270 A G FBXO40 Missense_Mutation p.R332G 0.18 deleterious(0) benign(0.138) TCGA-97-7554-01 3 133614406 133614406 G C RAB6B 5'UTR 0.33 TCGA-97-7554-01 3 14861743 14861743 A T FGD5 Missense_Mutation p.M389L 0.15 tolerated_low_confidence(0.43) benign(0) TCGA-97-7554-01 3 151545806 151545806 G A AADAC Missense_Mutation p.G349E 0.20 deleterious(0) probably_damaging(1) TCGA-97-7554-01 3 164735453 164735453 G T SI Silent p.G1214G 0.32 TCGA-97-7554-01 3 169099123 169099123 A C MECOM Missense_Mutation p.I100S 0.22 deleterious(0) probably_damaging(0.999) TCGA-97-7554-01 3 186502613 186502613 G T EIF4A2 Intron 0.14 TCGA-97-7554-01 3 186943230 186943230 G T MASP1 Missense_Mutation p.H541Q 0.16 deleterious(0) probably_damaging(1) TCGA-97-7554-01 3 190362060 190362060 G T IL1RAP Nonsense_Mutation p.E359* 0.15 TCGA-97-7554-01 3 191888365 191888365 G A FGF12 Silent p.R165R 0.21 TCGA-97-7554-01 3 196867097 196867097 C A DLG1 Silent p.T242T 0.22 TCGA-97-7554-01 3 447382 447382 C A CHL1 Silent p.P1221P 0.31 TCGA-97-7554-01 3 47450286 47450286 G A PTPN23 Missense_Mutation p.D451N 0.21 unknown(0) TCGA-97-7554-01 3 49841780 49841780 T A FAM212A Missense_Mutation p.V75E 0.25 tolerated(1) benign(0.219) TCGA-97-7554-01 3 51746673 51746673 C A GRM2 Missense_Mutation p.S212Y 0.26 deleterious(0) probably_damaging(1) TCGA-97-7554-01 3 52840398 52840398 C A ITIH3 Missense_Mutation p.R678S 0.32 tolerated(0.47) benign(0.003) TCGA-97-7554-01 3 64617141 64617141 G T ADAMTS9 Missense_Mutation p.D793E 0.05 deleterious(0) possibly_damaging(0.794) TCGA-97-7554-01 3 88040418 88040418 C G HTR1F Missense_Mutation p.I173M 0.14 tolerated(0.23) possibly_damaging(0.812) TCGA-97-7554-01 3 93619740 93619740 C A PROS1 Missense_Mutation p.C212F 0.15 deleterious(0) probably_damaging(0.991) TCGA-97-7554-01 3 97686352 97686352 C A MINA Missense_Mutation p.G29V 0.16 tolerated(0.45) benign(0.001) TCGA-97-7554-01 3 9877118 9877118 G A TTLL3 Missense_Mutation p.G898E 0.10 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-97-7554-01 4 100212093 100212093 G T ADH1A 5'UTR 0.29 TCGA-97-7554-01 4 100443848 100443848 C A C4orf17 Missense_Mutation p.P107T 0.15 tolerated(0.11) probably_damaging(0.964) TCGA-97-7554-01 4 109861693 109861694 - C COL25A1 Splice_Site p.X224_splice 0.18 TCGA-97-7554-01 4 114278492 114278492 G T ANK2 Missense_Mutation p.M2906I 0.24 benign(0.001) TCGA-97-7554-01 4 115544302 115544302 A T UGT8 Missense_Mutation p.K89M 0.25 tolerated(0.05) probably_damaging(1) TCGA-97-7554-01 4 115998118 115998118 G A NDST4 Silent p.S25S 0.23 TCGA-97-7554-01 4 119978927 119978927 C A SYNPO2 Silent p.S1208S 0.24 TCGA-97-7554-01 4 123317427 123317427 G T ADAD1 Missense_Mutation p.A207S 0.16 tolerated(0.68) benign(0.001) TCGA-97-7554-01 4 134071464 134071464 C A PCDH10 Missense_Mutation p.P57T 0.27 tolerated(0.23) benign(0.287) TCGA-97-7554-01 4 134072738 134072738 C A PCDH10 Nonsense_Mutation p.Y481* 0.19 TCGA-97-7554-01 4 146058708 146058708 C A OTUD4 Missense_Mutation p.W1008C 0.27 deleterious(0.01) probably_damaging(1) TCGA-97-7554-01 4 147741356 147741356 A G TTC29 Missense_Mutation p.V341A 0.19 deleterious(0) benign(0.257) TCGA-97-7554-01 4 154524568 154524568 A T KIAA0922 Missense_Mutation p.N918I 0.11 deleterious(0) benign(0.185) TCGA-97-7554-01 4 155241794 155241794 G - DCHS2 Frame_Shift_Del p.T1131Kfs*2 0.18 TCGA-97-7554-01 4 155508744 155508744 T A FGA Nonsense_Mutation p.K144* 0.28 TCGA-97-7554-01 4 156135828 156135828 T A NPY2R Nonsense_Mutation p.L246* 0.18 TCGA-97-7554-01 4 16504567 16504567 G T LDB2 Intron 0.21 TCGA-97-7554-01 4 175604028 175604028 C T GLRA3 Missense_Mutation p.E213K 0.12 tolerated(0.1) benign(0.167) TCGA-97-7554-01 4 177605008 177605008 C A VEGFC 3'UTR 0.30 TCGA-97-7554-01 4 183713454 183713454 C T TENM3 Missense_Mutation p.R1877W 0.25 deleterious(0) possibly_damaging(0.876) TCGA-97-7554-01 4 1920134 1920134 G T WHSC1 Missense_Mutation p.K398N 0.10 deleterious(0.02) benign(0.412) TCGA-97-7554-01 4 3441281 3441281 G T RGS12 Missense_Mutation p.G1405V 0.21 deleterious_low_confidence(0.03) benign(0.425) TCGA-97-7554-01 4 41258908 41258908 G A UCHL1 5'UTR 0.17 TCGA-97-7554-01 4 4317389 4317389 G A ZBTB49 Missense_Mutation p.R468H 0.12 deleterious(0) possibly_damaging(0.725) TCGA-97-7554-01 4 46264116 46264116 G T GABRA2 Missense_Mutation p.L296I 0.15 deleterious(0) probably_damaging(0.927) TCGA-97-7554-01 4 5862766 5862766 C A CRMP1 Silent p.G214G 0.14 TCGA-97-7554-01 4 6474060 6474060 G T PPP2R2C 5'UTR 0.24 TCGA-97-7554-01 4 651145 651145 G A PDE6B Silent p.L421L 0.27 TCGA-97-7554-01 4 68490785 68490785 C A UBA6 Missense_Mutation p.R880L 0.24 deleterious(0) benign(0.281) TCGA-97-7554-01 4 77272874 77272874 T G CCDC158 Missense_Mutation p.K846T 0.22 deleterious(0) probably_damaging(0.986) TCGA-97-7554-01 4 82031648 82031648 C A PRKG2 Missense_Mutation p.D632Y 0.18 deleterious(0) probably_damaging(1) TCGA-97-7554-01 4 88035845 88035845 C T AFF1 Silent p.A620A 0.29 TCGA-97-7554-01 4 96106324 96106324 C T UNC5C Silent p.Q720Q 0.17 TCGA-97-7554-01 5 1034410 1034410 T C NKD2 Missense_Mutation p.Y131H 0.22 deleterious(0) probably_damaging(0.998) TCGA-97-7554-01 5 13766239 13766239 G - DNAH5 Frame_Shift_Del p.P3316Lfs*22 0.29 TCGA-97-7554-01 5 139941196 139941196 A T APBB3 Missense_Mutation p.S248R 0.44 deleterious(0) probably_damaging(0.998) TCGA-97-7554-01 5 140214488 140214488 C A PCDHA7 Missense_Mutation p.P174T 0.46 tolerated_low_confidence(0.1) benign(0.018) TCGA-97-7554-01 5 140263343 140263343 G T PCDHA13 Missense_Mutation p.R497L 0.54 deleterious_low_confidence(0) probably_damaging(0.922) TCGA-97-7554-01 5 140719292 140719292 C - PCDHGA2 Frame_Shift_Del p.P252Rfs*13 0.27 TCGA-97-7554-01 5 140784509 140784509 A T PCDHGA9 Missense_Mutation p.I664L 0.47 tolerated_low_confidence(0.13) benign(0.007) TCGA-97-7554-01 5 145969781 145969781 A C PPP2R2B Missense_Mutation p.M357R 0.40 deleterious(0) possibly_damaging(0.899) TCGA-97-7554-01 5 150867873 150867873 G T SLC36A1 3'UTR 0.55 TCGA-97-7554-01 5 150946570 150946570 T G FAT2 Silent p.T641T 0.50 TCGA-97-7554-01 5 154065361 154065361 A G MIR1303 RNA 0.46 TCGA-97-7554-01 5 154394885 154394885 A G KIF4B Missense_Mutation p.D489G 0.39 tolerated(0.07) benign(0.14) TCGA-97-7554-01 5 154396536 154396536 G C KIF4B Missense_Mutation p.M1039I 0.50 tolerated(0.52) benign(0.001) TCGA-97-7554-01 5 15928506 15928506 C A FBXL7 Missense_Mutation p.P212H 0.34 deleterious(0.03) probably_damaging(0.936) TCGA-97-7554-01 5 169129338 169129338 C T DOCK2 Silent p.L430L 0.05 TCGA-97-7554-01 5 171777438 171777438 T A SH3PXD2B Missense_Mutation p.K314M 0.52 deleterious(0.03) possibly_damaging(0.798) TCGA-97-7554-01 5 176823992 176823992 C A SLC34A1 Missense_Mutation p.L445M 0.52 deleterious(0) probably_damaging(0.995) TCGA-97-7554-01 5 1878849 1878849 G T IRX4 Missense_Mutation p.P265Q 0.36 tolerated(0.11) possibly_damaging(0.502) TCGA-97-7554-01 5 195279 195279 C A LRRC14B Missense_Mutation p.D452E 0.18 tolerated(1) benign(0.005) TCGA-97-7554-01 5 23527395 23527395 C A PRDM9 Nonsense_Mutation p.S733* 0.17 TCGA-97-7554-01 5 26915805 26915805 G C CDH9 Missense_Mutation p.I152M 0.46 deleterious(0.01) probably_damaging(0.982) TCGA-97-7554-01 5 32780871 32780871 T C NPR3 Silent p.Y413Y 0.24 TCGA-97-7554-01 5 33751635 33751635 G A ADAMTS12 Missense_Mutation p.P170S 0.05 tolerated(0.61) probably_damaging(0.996) TCGA-97-7554-01 5 41008745 41008745 G A MROH2B Nonsense_Mutation p.Q1191* 0.43 TCGA-97-7554-01 5 52979007 52979007 G T NDUFS4 Missense_Mutation p.A162S 0.42 tolerated(0.3) benign(0.026) TCGA-97-7554-01 5 55395953 55395953 T A ANKRD55 3'UTR 0.33 TCGA-97-7554-01 5 66426037 66426037 G T MAST4 Splice_Site p.X582_splice 0.25 TCGA-97-7554-01 5 70809190 70809190 A G BDP1 Missense_Mutation p.M1476V 0.04 tolerated(0.32) benign(0.001) TCGA-97-7554-01 5 83433124 83433124 G T EDIL3 Missense_Mutation p.T135K 0.13 tolerated(0.3) possibly_damaging(0.878) TCGA-97-7554-01 5 85578556 85578556 C A NBPF22P RNA 0.17 TCGA-97-7554-01 6 123332140 123332140 G A CLVS2 Missense_Mutation p.V134M 0.35 tolerated(0.17) possibly_damaging(0.657) TCGA-97-7554-01 6 129762043 129762043 A G LAMA2 Silent p.T2056T 0.31 TCGA-97-7554-01 6 143091866 143091866 C T HIVEP2 Missense_Mutation p.R1337Q 0.19 deleterious(0) probably_damaging(0.996) TCGA-97-7554-01 6 146719925 146719925 C T GRM1 Missense_Mutation p.R584C 0.04 deleterious(0) benign(0.339) TCGA-97-7554-01 6 152129254 152129254 C A ESR1 Missense_Mutation p.N69K 0.30 tolerated(0.25) benign(0.002) TCGA-97-7554-01 6 162683678 162683678 C A PARK2 Silent p.R97R 0.28 TCGA-97-7554-01 6 169640673 169640673 C A THBS2 Missense_Mutation p.Q302H 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.498) TCGA-97-7554-01 6 24651078 24651078 C A TDP2 Missense_Mutation p.D343Y 0.13 deleterious(0) probably_damaging(0.95) TCGA-97-7554-01 6 26411336 26411336 G - BTN3A1 Splice_Site p.X323_splice 0.09 TCGA-97-7554-01 6 28539765 28539765 G A SCAND3 Silent p.L1301L 0.25 TCGA-97-7554-01 6 28872429 28872429 C G TRIM27 Silent p.L320L 0.15 TCGA-97-7554-01 6 2892184 2892184 G A SERPINB9 Silent p.A202A 0.07 TCGA-97-7554-01 6 29274893 29274893 G T OR14J1 Missense_Mutation p.V143L 0.50 tolerated(0.08) benign(0.107) TCGA-97-7554-01 6 30653751 30653751 G T PPP1R18 Silent p.R15R 0.20 TCGA-97-7554-01 6 31600360 31600360 G T PRRC2A Missense_Mutation p.A1304S 0.15 unknown(0) TCGA-97-7554-01 6 32180263 32180263 C A NOTCH4 Missense_Mutation p.A890S 0.58 deleterious(0) possibly_damaging(0.5) TCGA-97-7554-01 6 32816584 32816584 C A TAP1 Missense_Mutation p.A531S 0.52 tolerated(0.16) possibly_damaging(0.725) TCGA-97-7554-01 6 350734 350734 G T DUSP22 Intron 0.26 TCGA-97-7554-01 6 39282878 39282878 G T KCNK16 3'UTR 0.20 TCGA-97-7554-01 6 43275482 43275482 C A CRIP3 Splice_Site p.X66_splice 0.23 TCGA-97-7554-01 6 43480928 43480928 G T YIPF3 Missense_Mutation p.T182N 0.24 deleterious(0) probably_damaging(0.999) TCGA-97-7554-01 6 49754702 49754702 G T PGK2 Missense_Mutation p.P67T 0.39 deleterious(0) probably_damaging(0.99) TCGA-97-7554-01 6 56819367 56819367 G T BEND6 5'Flank 0.30 TCGA-97-7554-01 6 56880084 56880084 C T BEND6 Missense_Mutation p.S151F 0.44 deleterious(0) benign(0.328) TCGA-97-7554-01 6 70071353 70071353 A T BAI3 Silent p.A1396A 0.37 TCGA-97-7554-01 6 73102455 73102455 G T RIMS1 Missense_Mutation p.D1521Y 0.30 deleterious(0) probably_damaging(0.972) TCGA-97-7554-01 6 88853946 88853946 C G CNR1 Missense_Mutation p.V350L 0.04 tolerated(0.28) possibly_damaging(0.669) TCGA-97-7554-01 7 100361433 100361433 C G ZAN Missense_Mutation p.Q1331E 0.05 unknown(0) TCGA-97-7554-01 7 100696348 100696348 G A MUC17 Silent p.V4395V 0.16 TCGA-97-7554-01 7 102108574 102108574 G T LRWD1 Silent p.A248A 0.14 TCGA-97-7554-01 7 103205900 103205900 A T RELN Missense_Mutation p.S1679T 0.21 tolerated(0.54) benign(0.014) TCGA-97-7554-01 7 107204403 107204403 G T COG5 Missense_Mutation p.S11Y 0.35 tolerated_low_confidence(0.52) possibly_damaging(0.781) TCGA-97-7554-01 7 108524062 108524062 C G C7orf66 3'UTR 0.21 TCGA-97-7554-01 7 111430661 111430661 C A DOCK4 Missense_Mutation p.G1056V 0.28 deleterious(0) probably_damaging(0.999) TCGA-97-7554-01 7 120884330 120884330 C A CPED1 Missense_Mutation p.H750N 0.27 tolerated(0.06) benign(0.188) TCGA-97-7554-01 7 121651931 121651931 A G PTPRZ1 Missense_Mutation p.Y944C 0.26 deleterious_low_confidence(0) possibly_damaging(0.497) TCGA-97-7554-01 7 128034398 128034398 C T IMPDH1 Missense_Mutation p.G571E 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-97-7554-01 7 128488078 128488078 C T FLNC Silent p.P1512P 0.33 TCGA-97-7554-01 7 141952344 141952344 G T PRSS58 Missense_Mutation p.T175K 0.27 tolerated(0.26) benign(0.005) TCGA-97-7554-01 7 142099521 142099521 G A TRBV7-8 Missense_Mutation p.S94F 0.07 tolerated(0.08) possibly_damaging(0.744) TCGA-97-7554-01 7 142423431 142423431 C A TRBV27 Nonsense_Mutation p.Y29* 0.28 TCGA-97-7554-01 7 142498960 142498960 C A TRBC2 Silent p.R79R 0.10 TCGA-97-7554-01 7 142627152 142627152 C A TRPV5 Splice_Site p.X117_splice 0.29 TCGA-97-7554-01 7 142651549 142651549 T A KEL Intron 0.32 TCGA-97-7554-01 7 143701161 143701161 G T OR6B1 Silent p.R24R 0.32 TCGA-97-7554-01 7 143748127 143748127 C G OR2A5 Silent p.L211L 0.28 TCGA-97-7554-01 7 148515173 148515173 C T EZH2 Missense_Mutation p.E346K 0.09 tolerated(0.22) possibly_damaging(0.562) TCGA-97-7554-01 7 149491894 149491894 C A SSPO RNA 0.15 TCGA-97-7554-01 7 154172070 154172070 T C DPP6 Silent p.D135D 0.10 TCGA-97-7554-01 7 18688117 18688117 C T HDAC9 Silent p.P426P 0.15 TCGA-97-7554-01 7 21784546 21784546 G C DNAH11 Missense_Mutation p.R2799T 0.28 benign(0.026) TCGA-97-7554-01 7 27182927 27182927 C A HOXA5 Silent p.P100P 0.29 TCGA-97-7554-01 7 2976714 2976714 C G CARD11 Missense_Mutation p.S433T 0.31 tolerated(0.13) benign(0.207) TCGA-97-7554-01 7 37780847 37780847 C T GPR141 Silent p.V284V 0.22 TCGA-97-7554-01 7 39247051 39247051 C A POU6F2 Missense_Mutation p.P115T 0.26 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-97-7554-01 7 43283514 43283514 C - HECW1 Frame_Shift_Del p.H4Tfs*5 0.21 TCGA-97-7554-01 7 43447293 43447293 T A HECW1 Missense_Mutation p.I255N 0.36 deleterious(0.01) probably_damaging(0.982) TCGA-97-7554-01 7 43484732 43484732 C A HECW1 Missense_Mutation p.T654N 0.37 tolerated_low_confidence(0.1) benign(0.322) TCGA-97-7554-01 7 44560608 44560608 G A NPC1L1 Silent p.N1021N 0.27 TCGA-97-7554-01 7 45650033 45650033 A G ADCY1 Missense_Mutation p.D282G 0.27 deleterious(0.01) possibly_damaging(0.67) TCGA-97-7554-01 7 50023026 50023026 T C ZPBP Silent p.E291E 0.29 TCGA-97-7554-01 7 5760761 5760761 T A RNF216 Missense_Mutation p.K516M 0.32 deleterious(0) possibly_damaging(0.902) TCGA-97-7554-01 7 70255379 70255379 G T AUTS2 Missense_Mutation p.E1059D 0.20 tolerated(0.17) benign(0.117) TCGA-97-7554-01 7 72298738 72298738 A T TYW1B 5'UTR 0.29 TCGA-97-7554-01 7 87160794 87160794 G A ABCB1 Missense_Mutation p.A834V 0.33 deleterious(0.02) benign(0.178) TCGA-97-7554-01 7 89982211 89982211 G T GTPBP10 Missense_Mutation p.G39C 0.36 deleterious(0) probably_damaging(1) TCGA-97-7554-01 7 95726882 95726882 G T DYNC1I1 Missense_Mutation p.G639C 0.22 deleterious(0.01) possibly_damaging(0.874) TCGA-97-7554-01 7 99809090 99809090 G T STAG3 Missense_Mutation p.R1148M 0.26 deleterious_low_confidence(0) benign(0.021) TCGA-97-7554-01 8 105361457 105361457 G T DCSTAMP Missense_Mutation p.G226V 0.20 deleterious(0.01) possibly_damaging(0.707) TCGA-97-7554-01 8 113253949 113253949 C A CSMD3 Missense_Mutation p.V3490F 0.29 deleterious(0.02) possibly_damaging(0.806) TCGA-97-7554-01 8 124266145 124266145 C A ZHX1 Missense_Mutation p.R681L 0.36 deleterious(0) possibly_damaging(0.865) TCGA-97-7554-01 8 143994821 143994821 G T CYP11B2 Missense_Mutation p.P334H 0.29 deleterious(0) probably_damaging(0.994) TCGA-97-7554-01 8 145108265 145108265 C A OPLAH Missense_Mutation p.K906N 0.17 tolerated(0.06) benign(0.02) TCGA-97-7554-01 8 2046747 2046747 G T MYOM2 Missense_Mutation p.G792C 0.29 deleterious(0) probably_damaging(1) TCGA-97-7554-01 8 3443742 3443742 C A CSMD1 Missense_Mutation p.V380L 0.20 probably_damaging(0.997) TCGA-97-7554-01 8 41552150 41552150 G - ANK1 Frame_Shift_Del p.P1137Rfs*9 0.28 TCGA-97-7554-01 8 42586918 42586918 C G CHRNB3 Missense_Mutation p.D156E 0.15 deleterious(0.01) possibly_damaging(0.59) TCGA-97-7554-01 8 49987906 49987906 G A C8orf22 3'UTR 0.27 TCGA-97-7554-01 8 68421816 68421816 G A CPA6 Missense_Mutation p.S157L 0.20 deleterious(0) benign(0.297) TCGA-97-7554-01 8 70981566 70981566 T A PRDM14 Missense_Mutation p.Q177L 0.27 tolerated(0.45) benign(0.001) TCGA-97-7554-01 8 77766126 77766126 G A ZFHX4 Silent p.R2323R 0.19 TCGA-97-7554-01 8 77895700 77895700 T A PEX2 Missense_Mutation p.T239S 0.08 tolerated(0.81) benign(0.002) TCGA-97-7554-01 8 87679339 87679339 G T CNGB3 Silent p.L222L 0.24 TCGA-97-7554-01 8 95189922 95189922 A C CDH17 Missense_Mutation p.F60V 0.32 deleterious(0.02) probably_damaging(0.926) TCGA-97-7554-01 9 101749627 101749627 C A COL15A1 Missense_Mutation p.L234M 0.08 tolerated(0.21) possibly_damaging(0.602) TCGA-97-7554-01 9 114348369 114348369 T C PTGR1 Missense_Mutation p.I96V 0.34 tolerated(0.39) benign(0) TCGA-97-7554-01 9 119106938 119106938 G T PAPPA Missense_Mutation p.R1243L 0.41 tolerated(0.17) benign(0.003) TCGA-97-7554-01 9 130635071 130635071 G A AK1 Silent p.T35T 0.11 TCGA-97-7554-01 9 136405847 136405847 C A ADAMTSL2 Nonsense_Mutation p.C180* 0.39 TCGA-97-7554-01 9 137630345 137630345 G T COL5A1 Missense_Mutation p.G472V 0.10 probably_damaging(1) TCGA-97-7554-01 9 138588531 138588531 C G SOHLH1 Silent p.T196T 0.40 TCGA-97-7554-01 9 139747556 139747556 G T MAMDC4 Missense_Mutation p.G17W 0.60 deleterious(0.01) benign(0.007) TCGA-97-7554-01 9 140777407 140777407 G A CACNA1B Intron 0.13 TCGA-97-7554-01 9 14737474 14737474 C A FREM1 Missense_Mutation p.V2154F 0.20 deleterious(0.03) possibly_damaging(0.529) TCGA-97-7554-01 9 37707468 37707468 C A FRMPD1 Missense_Mutation p.P53T 0.31 tolerated(0.26) benign(0.005) TCGA-97-7554-01 9 40702898 40702898 G T SPATA31A3 Missense_Mutation p.Q185H 0.33 tolerated(0.19) possibly_damaging(0.891) TCGA-97-7554-01 9 43627644 43627644 C A SPATA31A6 Missense_Mutation p.G348V 0.57 deleterious(0.01) probably_damaging(0.984) TCGA-97-7554-01 9 43627645 43627645 C A SPATA31A6 Nonsense_Mutation p.G348* 0.56 TCGA-97-7554-01 9 43630516 43630516 T C SPATA31A6 Silent p.R62R 0.61 TCGA-97-7554-01 9 4844522 4844522 C T RCL1 Intron 0.29 TCGA-97-7554-01 9 73424904 73424905 - G TRPM3 Intron 0.10 TCGA-97-7554-01 9 77354303 77354303 T G TRPM6 Missense_Mutation p.Q1850H 0.40 tolerated(0.96) benign(0.013) TCGA-97-7554-01 9 79635314 79635314 G T FOXB2 Silent p.G248G 0.47 TCGA-97-7554-01 9 87570366 87570366 G C NTRK2 Missense_Mutation p.E702D 0.16 tolerated(0.19) probably_damaging(0.972) TCGA-97-7554-01 X 105152724 105152724 C A NRK Missense_Mutation p.P365H 0.14 deleterious_low_confidence(0) benign(0.018) TCGA-97-7554-01 X 105882817 105882817 G T CXorf57 Missense_Mutation p.R545M 0.11 deleterious(0) probably_damaging(0.999) TCGA-97-7554-01 X 107225222 107225222 C A TEX13B Missense_Mutation p.V46L 0.08 deleterious(0) probably_damaging(0.944) TCGA-97-7554-01 X 107977374 107977374 C A IRS4 Missense_Mutation p.R734L 0.10 deleterious(0.01) unknown(0) TCGA-97-7554-01 X 111914478 111914478 G A LHFPL1 Silent p.F47F 0.06 TCGA-97-7554-01 X 118221651 118221651 C A KIAA1210 Missense_Mutation p.G1181V 0.11 tolerated(0.29) possibly_damaging(0.502) TCGA-97-7554-01 X 118709339 118709339 C A UBE2A Missense_Mutation p.P43T 0.17 deleterious(0.01) probably_damaging(1) TCGA-97-7554-01 X 119005497 119005497 G T RNF113A Missense_Mutation p.A27D 0.17 tolerated(0.13) benign(0.147) TCGA-97-7554-01 X 123480538 123480538 G T SH2D1A Missense_Mutation p.G16C 0.27 tolerated(0.35) probably_damaging(1) TCGA-97-7554-01 X 127184979 127184979 C A ACTRT1 3'UTR 0.07 TCGA-97-7554-01 X 128873207 128873207 G T XPNPEP2 Missense_Mutation p.W6C 0.03 deleterious_low_confidence(0.02) benign(0.01) TCGA-97-7554-01 X 12906090 12906090 G A TLR7 Silent p.K821K 0.15 TCGA-97-7554-01 X 129149581 129149581 C T BCORL1 Nonsense_Mutation p.R945* 0.11 TCGA-97-7554-01 X 130218253 130218253 A T ARHGAP36 Missense_Mutation p.Q207L 0.59 deleterious(0) benign(0.097) TCGA-97-7554-01 X 131540343 131540343 C T MBNL3 Silent p.R85R 0.11 TCGA-97-7554-01 X 141291176 141291176 C A MAGEC2 Missense_Mutation p.V200L 0.60 deleterious(0.03) benign(0.097) TCGA-97-7554-01 X 144906475 144906475 G A SLITRK2 Silent p.Q844Q 0.57 TCGA-97-7554-01 X 148039929 148039929 C A AFF2 Silent p.I877I 0.45 TCGA-97-7554-01 X 14871289 14871289 C - FANCB Frame_Shift_Del p.V400Ffs*27 0.17 TCGA-97-7554-01 X 149638377 149638377 G C MAMLD1 Missense_Mutation p.E153Q 0.09 deleterious(0) possibly_damaging(0.571) TCGA-97-7554-01 X 151870201 151870201 T - MAGEA6 Frame_Shift_Del p.R298Afs*12 0.09 TCGA-97-7554-01 X 152613149 152613149 C A ZNF275 Intron 0.10 TCGA-97-7554-01 X 153215033 153215033 G T HCFC1 Silent p.A2013A 0.07 TCGA-97-7554-01 X 153247646 153247646 G A TMEM187 Missense_Mutation p.V45M 0.09 deleterious(0.01) probably_damaging(0.928) TCGA-97-7554-01 X 153716440 153716440 G T SLC10A3 Missense_Mutation p.D280E 0.11 deleterious(0) probably_damaging(0.999) TCGA-97-7554-01 X 154158987 154158987 T C F8 Silent p.S1026S 0.50 TCGA-97-7554-01 X 17818712 17818712 G T RAI2 Silent p.S473S 0.12 TCGA-97-7554-01 X 18230737 18230737 T C BEND2 Missense_Mutation p.Y147C 0.13 tolerated(0.17) probably_damaging(0.924) TCGA-97-7554-01 X 21444616 21444616 T C CNKSR2 Silent p.G22G 0.09 TCGA-97-7554-01 X 26212219 26212219 G T MAGEB6 Missense_Mutation p.A86S 0.16 tolerated(0.07) probably_damaging(0.992) TCGA-97-7554-01 X 30261111 30261111 G T MAGEB4 Nonsense_Mutation p.E287* 0.31 TCGA-97-7554-01 X 37027649 37027649 C T FAM47C Missense_Mutation p.P389L 0.29 tolerated(0.35) benign(0.444) TCGA-97-7554-01 X 43662545 43662545 A T MAOB Splice_Site p.X128_splice 0.08 TCGA-97-7554-01 X 46917891 46917891 G T JADE3 Silent p.S628S 0.12 TCGA-97-7554-01 X 47002067 47002067 A T NDUFB11 Missense_Mutation p.V95D 0.26 deleterious(0) possibly_damaging(0.844) TCGA-97-7554-01 X 48767203 48767203 G A SLC35A2 Silent p.I54I 0.17 TCGA-97-7554-01 X 48935502 48935502 G T WDR45 Missense_Mutation p.H42N 0.12 deleterious(0.05) benign(0.038) TCGA-97-7554-01 X 49022560 49022560 C A MAGIX Missense_Mutation p.A276D 0.35 deleterious(0.01) benign(0.282) TCGA-97-7554-01 X 63411318 63411318 C A AMER1 Nonsense_Mutation p.E617* 0.11 TCGA-97-7554-01 X 70837092 70837092 A T CXCR3 Missense_Mutation p.V124E 0.27 deleterious(0) probably_damaging(0.998) TCGA-97-7554-01 X 75649518 75649518 G C MAGEE1 Missense_Mutation p.G399R 0.28 deleterious(0.04) benign(0.002) TCGA-97-7554-01 X 76711990 76711990 A G FGF16 Missense_Mutation p.R110G 0.10 possibly_damaging(0.465) TCGA-97-7554-01 X 91873704 91873704 G C PCDH11X Missense_Mutation p.S1270T 0.15 tolerated_low_confidence(0.27) benign(0.002) TCGA-97-7937-01 10 103577825 103577825 T G MGEA5 5'UTR 0.78 TCGA-97-7937-01 10 105218577 105218577 C A CALHM1 5'UTR 0.38 TCGA-97-7937-01 10 106960951 106960951 G A SORCS3 Missense_Mutation p.R734Q 0.34 tolerated(0.15) benign(0.006) TCGA-97-7937-01 10 108380255 108380255 C T SORCS1 Silent p.A909A 0.18 TCGA-97-7937-01 10 120353836 120353836 G T PRLHR Silent p.A307A 0.19 TCGA-97-7937-01 10 120353837 120353837 G T PRLHR Missense_Mutation p.A307D 0.18 deleterious(0) probably_damaging(0.968) TCGA-97-7937-01 10 124595810 124595810 C A CUZD1 Nonsense_Mutation p.E292* 0.52 TCGA-97-7937-01 10 15255026 15255026 C A FAM171A1 Missense_Mutation p.R854I 0.16 tolerated(0.19) benign(0.175) TCGA-97-7937-01 10 16961963 16961963 T A CUBN Missense_Mutation p.N2274Y 0.60 deleterious(0) probably_damaging(0.928) TCGA-97-7937-01 10 17891714 17891714 G C MRC1L1 Missense_Mutation p.A399P 0.14 benign(0.423) TCGA-97-7937-01 10 17949621 17949621 C T MRC1L1 Missense_Mutation p.R1329W 0.12 possibly_damaging(0.761) TCGA-97-7937-01 10 18289663 18289663 C A SLC39A12 Silent p.G556G 0.60 TCGA-97-7937-01 10 18289664 18289664 C G SLC39A12 Missense_Mutation p.L557V 0.60 deleterious(0.05) probably_damaging(0.951) TCGA-97-7937-01 10 18789836 18789836 G T CACNB2 Silent p.L184L 0.28 TCGA-97-7937-01 10 24885806 24885806 T C ARHGAP21 Missense_Mutation p.T1114A 0.59 tolerated(0.15) probably_damaging(0.928) TCGA-97-7937-01 10 31812883 31812883 C A ZEB1 Nonsense_Mutation p.S876* 0.08 TCGA-97-7937-01 10 43279882 43279882 A T BMS1 Missense_Mutation p.S14C 0.40 deleterious(0) probably_damaging(0.998) TCGA-97-7937-01 10 47000090 47000090 G A GPRIN2 Missense_Mutation p.G404S 0.08 deleterious(0) probably_damaging(1) TCGA-97-7937-01 10 48388931 48388931 G T RBP3 Silent p.A649A 0.20 TCGA-97-7937-01 10 54527994 54527994 C T MBL2 Missense_Mutation p.G217D 0.58 tolerated(0.23) benign(0.05) TCGA-97-7937-01 10 54528149 54528149 G T MBL2 Silent p.P165P 0.49 TCGA-97-7937-01 10 5930007 5930007 G C ANKRD16 Missense_Mutation p.T113R 0.10 deleterious(0) probably_damaging(0.978) TCGA-97-7937-01 10 74671501 74671501 G A OIT3 Missense_Mutation p.G232S 0.25 tolerated(0.21) possibly_damaging(0.899) TCGA-97-7937-01 10 7708784 7708784 C A ITIH5 Missense_Mutation p.W24C 0.62 tolerated_low_confidence(0.18) possibly_damaging(0.634) TCGA-97-7937-01 11 102706916 102706916 C G MMP3 Missense_Mutation p.D459H 0.03 deleterious(0) probably_damaging(0.996) TCGA-97-7937-01 11 104034583 104034583 G T PDGFD Missense_Mutation p.P25T 0.44 tolerated(0.11) benign(0.031) TCGA-97-7937-01 11 118037795 118037795 G T SCN2B Missense_Mutation p.P152H 0.61 deleterious(0.03) probably_damaging(0.996) TCGA-97-7937-01 11 118399492 118399492 A G TTC36 Missense_Mutation p.Q98R 0.05 tolerated(0.64) benign(0.034) TCGA-97-7937-01 11 119148982 119148982 G T CBL Missense_Mutation p.C401F 0.36 deleterious(0) probably_damaging(1) TCGA-97-7937-01 11 119243549 119243549 C A USP2 Missense_Mutation p.Q214H 0.46 tolerated_low_confidence(0.59) benign(0.243) TCGA-97-7937-01 11 1217197 1217197 G C MUC5AC RNA 0.29 TCGA-97-7937-01 11 123814234 123814234 G T OR6T1 Nonsense_Mutation p.Y104* 0.11 TCGA-97-7937-01 11 123900899 123900899 C T OR10G8 Silent p.D190D 0.30 TCGA-97-7937-01 11 124765732 124765732 C A ROBO4 Silent p.P252P 0.29 TCGA-97-7937-01 11 1263424 1263424 T C MUC5B Silent p.L1772L 0.45 TCGA-97-7937-01 11 18436732 18436732 A T LDHC Missense_Mutation p.D43V 0.38 deleterious(0.03) possibly_damaging(0.885) TCGA-97-7937-01 11 18955686 18955686 C A MRGPRX1 Missense_Mutation p.V216L 0.12 tolerated(0.09) benign(0.273) TCGA-97-7937-01 11 21392455 21392455 G T NELL1 Missense_Mutation p.V536F 0.24 deleterious(0.01) benign(0.278) TCGA-97-7937-01 11 24784845 24784845 C A LUZP2 Silent p.L129L 0.33 TCGA-97-7937-01 11 40137471 40137471 C T LRRC4C Silent p.A124A 0.14 TCGA-97-7937-01 11 46408006 46408006 G A CHRM4 Silent p.F34F 0.12 TCGA-97-7937-01 11 4843021 4843021 C T OR51F2 Missense_Mutation p.R136C 0.37 deleterious(0.02) possibly_damaging(0.855) TCGA-97-7937-01 11 5011057 5011057 G A MMP26 Silent p.S93S 0.22 TCGA-97-7937-01 11 5255342 5255342 C A HBD Missense_Mutation p.G65V 0.29 deleterious(0) probably_damaging(1) TCGA-97-7937-01 11 55579763 55579763 C A OR5L1 Missense_Mutation p.A274D 0.36 deleterious(0) probably_damaging(0.939) TCGA-97-7937-01 11 55594697 55594697 G - OR5L2 Frame_Shift_Del p.G2Afs*22 0.18 TCGA-97-7937-01 11 55761238 55761238 C A OR5F1 Silent p.L288L 0.30 TCGA-97-7937-01 11 55761239 55761239 A G OR5F1 Missense_Mutation p.L288P 0.30 deleterious(0) probably_damaging(0.95) TCGA-97-7937-01 11 56086160 56086160 C G OR8K3 Missense_Mutation p.I126M 0.33 deleterious_low_confidence(0) possibly_damaging(0.877) TCGA-97-7937-01 11 56127775 56127775 C G OR8J1 Missense_Mutation p.S18C 0.37 deleterious(0) probably_damaging(0.954) TCGA-97-7937-01 11 56143662 56143662 C G OR8U1 Missense_Mutation p.T188S 0.24 tolerated(1) benign(0.044) TCGA-97-7937-01 11 58207410 58207410 G A OR5B12 Missense_Mutation p.S72F 0.32 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-97-7937-01 11 59599163 59599163 G T GIF Missense_Mutation p.P394T 0.33 deleterious(0) possibly_damaging(0.536) TCGA-97-7937-01 11 59943069 59943069 C - MS4A6A Frame_Shift_Del p.V147Lfs*5 0.23 TCGA-97-7937-01 11 60182930 60182930 G T MS4A14 Silent p.S196S 0.32 TCGA-97-7937-01 11 60233393 60233393 G T MS4A1 Splice_Site p.X113_splice 0.15 TCGA-97-7937-01 11 6191349 6191349 C A OR52B2 Missense_Mutation p.V70F 0.37 tolerated(0.18) benign(0.003) TCGA-97-7937-01 11 62065061 62065061 A G SCGB1D4 Missense_Mutation p.V42A 0.10 deleterious(0.04) benign(0.039) TCGA-97-7937-01 11 6220836 6220836 C A OR52W1 Missense_Mutation p.A128D 0.33 deleterious(0) probably_damaging(0.933) TCGA-97-7937-01 11 62678015 62678015 G T CHRM1 Silent p.P186P 0.10 TCGA-97-7937-01 11 62911077 62911077 C G SLC22A24 Missense_Mutation p.V59L 0.38 tolerated(0.12) benign(0.079) TCGA-97-7937-01 11 6292607 6292607 T C CCKBR Missense_Mutation p.M393T 0.26 deleterious(0) probably_damaging(0.996) TCGA-97-7937-01 11 64374729 64374729 G A NRXN2 Missense_Mutation p.P1693L 0.24 tolerated(0.08) benign(0.125) TCGA-97-7937-01 11 65721154 65721154 C A TSGA10IP RNA 0.13 TCGA-97-7937-01 11 68853220 68853220 G A TPCN2 Silent p.A640A 0.23 TCGA-97-7937-01 11 82625771 82625771 G C C11orf82 5'UTR 0.28 TCGA-97-7937-01 11 82921358 82921358 G T ANKRD42 Missense_Mutation p.G88V 0.30 deleterious(0) probably_damaging(1) TCGA-97-7937-01 11 88323889 88323889 G T GRM5 Silent p.R524R 0.25 TCGA-97-7937-01 11 92087123 92087123 C T FAT3 Silent p.I615I 0.39 TCGA-97-7937-01 11 92715180 92715180 G A MTNR1B Nonsense_Mutation p.W264* 0.39 TCGA-97-7937-01 11 970255 970255 G A AP2A2 Missense_Mutation p.G75R 0.28 deleterious(0) probably_damaging(1) TCGA-97-7937-01 12 109094945 109094945 T C CORO1C Missense_Mutation p.I50M 0.26 deleterious(0) possibly_damaging(0.884) TCGA-97-7937-01 12 111760342 111760342 C A CUX2 Missense_Mutation p.Q962K 0.30 deleterious(0.04) probably_damaging(0.981) TCGA-97-7937-01 12 113745551 113745551 C A SLC8B1 Silent p.R452R 0.43 TCGA-97-7937-01 12 129563149 129563149 A T TMEM132D Missense_Mutation p.L682H 0.57 tolerated(0.43) probably_damaging(0.951) TCGA-97-7937-01 12 13715656 13715656 C A GRIN2B 3'UTR 0.58 TCGA-97-7937-01 12 13716716 13716716 G T GRIN2B Silent p.T1152T 0.27 TCGA-97-7937-01 12 16753644 16753644 C A LMO3 Intron 0.17 TCGA-97-7937-01 12 2602407 2602407 G T CACNA1C Missense_Mutation p.G323V 0.23 deleterious(0) possibly_damaging(0.902) TCGA-97-7937-01 12 2714876 2714876 G A CACNA1C Missense_Mutation p.R1047Q 0.41 deleterious(0.02) possibly_damaging(0.866) TCGA-97-7937-01 12 33049511 33049511 T C PKP2 Missense_Mutation p.K52R 0.14 tolerated(0.4) benign(0.263) TCGA-97-7937-01 12 43846314 43846314 T A ADAMTS20 Intron 0.20 TCGA-97-7937-01 12 4461605 4461605 A T C12orf5 Silent p.P187P 0.45 TCGA-97-7937-01 12 52100473 52100473 G T SCN8A Missense_Mutation p.G537W 0.50 deleterious(0) probably_damaging(0.965) TCGA-97-7937-01 12 54963089 54963089 G T PDE1B Nonsense_Mutation p.E117* 0.19 TCGA-97-7937-01 12 56094734 56094734 G A ITGA7 Missense_Mutation p.P207S 0.41 tolerated(0.17) benign(0.259) TCGA-97-7937-01 12 58006675 58006675 G A ARHGEF25 Intron 0.17 TCGA-97-7937-01 12 64615783 64615783 C A C12orf66 Missense_Mutation p.G79W 0.45 deleterious(0.01) probably_damaging(0.916) TCGA-97-7937-01 12 72017243 72017243 A G ZFC3H1 Silent p.N1547N 0.17 TCGA-97-7937-01 12 7639150 7639150 G T CD163 Missense_Mutation p.H801Q 0.17 tolerated(0.47) possibly_damaging(0.657) TCGA-97-7937-01 12 7867942 7867942 G T DPPA3 Missense_Mutation p.R82S 0.61 deleterious(0.02) benign(0.005) TCGA-97-7937-01 12 7981387 7981387 T C SLC2A14 Missense_Mutation p.I220V 0.14 tolerated(1) benign(0.018) TCGA-97-7937-01 12 81545594 81545594 G C ACSS3 Intron 0.55 TCGA-97-7937-01 12 93244898 93244898 C T EEA1 Missense_Mutation p.A263T 0.10 tolerated(1) benign(0.001) TCGA-97-7937-01 13 111090995 111090995 A T COL4A2 Missense_Mutation p.M298L 0.47 benign(0.127) TCGA-97-7937-01 13 113699673 113699673 G A MCF2L Missense_Mutation p.A123T 0.67 deleterious(0.04) benign(0.126) TCGA-97-7937-01 13 113714936 113714936 C T MCF2L Silent p.V133V 0.46 TCGA-97-7937-01 13 113771857 113771857 C A F7 Missense_Mutation p.A251E 0.36 deleterious(0) probably_damaging(1) TCGA-97-7937-01 13 25671622 25671622 C A PABPC3 Missense_Mutation p.P429H 0.10 deleterious(0.01) benign(0.127) TCGA-97-7937-01 13 25826072 25826072 T G MTMR6 Missense_Mutation p.K466T 0.49 tolerated(0.57) benign(0) TCGA-97-7937-01 13 58206761 58206761 G T PCDH17 Missense_Mutation p.E27D 0.62 deleterious(0.02) benign(0.232) TCGA-97-7937-01 13 58299356 58299356 G - PCDH17 Frame_Shift_Del p.E1137Kfs*3 0.10 TCGA-97-7937-01 13 75861045 75861045 C G TBC1D4 Missense_Mutation p.K1260N 0.22 tolerated(0.34) benign(0.026) TCGA-97-7937-01 13 88328774 88328774 G T SLITRK5 Silent p.A377A 0.41 TCGA-97-7937-01 13 95121220 95121220 C A DCT Silent p.V125V 0.45 TCGA-97-7937-01 14 101193396 101193396 C T DLK1 5'UTR 0.30 TCGA-97-7937-01 14 106174413 106174413 G A IGHA1 Nonsense_Mutation p.R126* 0.19 TCGA-97-7937-01 14 20849833 20849833 C A TEP1 Missense_Mutation p.E1479D 0.27 tolerated(0.21) possibly_damaging(0.836) TCGA-97-7937-01 14 21360130 21360130 C G RNASE3 Silent p.L95L 0.40 TCGA-97-7937-01 14 21500233 21500233 G T TPPP2 Missense_Mutation p.K170N 0.14 deleterious(0) benign(0.055) TCGA-97-7937-01 14 22315257 22315257 T C TRAV8-2 Silent p.L65L 0.28 TCGA-97-7937-01 14 23902898 23902898 T C MYH7 Missense_Mutation p.Y15C 0.53 deleterious(0) probably_damaging(0.987) TCGA-97-7937-01 14 24026245 24026245 T C THTPA Silent p.C93C 0.07 TCGA-97-7937-01 14 24780785 24780785 G T LTB4R2 Silent p.T305T 0.22 TCGA-97-7937-01 14 60574939 60574939 A G PCNXL4 Intron 0.24 TCGA-97-7937-01 14 64675528 64675528 A C SYNE2 Missense_Mutation p.N6085T 0.28 possibly_damaging(0.841) TCGA-97-7937-01 14 69520831 69520831 C G DCAF5 Missense_Mutation p.A858P 0.16 tolerated_low_confidence(0.15) benign(0.122) TCGA-97-7937-01 14 70635016 70635016 C T SLC8A3 Missense_Mutation p.G42R 0.34 tolerated(0.07) benign(0.082) TCGA-97-7937-01 14 76967186 76967186 G T ESRRB 3'UTR 0.44 TCGA-97-7937-01 14 79175973 79175973 G A NRXN3 Silent p.V172V 0.24 TCGA-97-7937-01 14 81744475 81744475 C A STON2 Missense_Mutation p.D394Y 0.19 deleterious(0) probably_damaging(0.997) TCGA-97-7937-01 14 86089745 86089745 C G FLRT2 Silent p.T629T 0.21 TCGA-97-7937-01 14 89337909 89337909 G T TTC8 Missense_Mutation p.G356C 0.17 deleterious(0) probably_damaging(0.999) TCGA-97-7937-01 14 94563303 94563303 G T IFI27L1 Missense_Mutation p.W7L 0.19 tolerated_low_confidence(0.62) unknown(0) TCGA-97-7937-01 14 94770882 94770882 G T SERPINA6 Missense_Mutation p.T364N 0.38 tolerated(0.19) benign(0.067) TCGA-97-7937-01 15 101114206 101114206 A G LINS Missense_Mutation p.I291T 0.47 tolerated(0.13) benign(0.037) TCGA-97-7937-01 15 25222142 25222142 G T SNRPN Missense_Mutation p.G129V 0.34 deleterious(0) probably_damaging(0.991) TCGA-97-7937-01 15 31357259 31357259 T A TRPM1 Intron 0.34 TCGA-97-7937-01 15 32976839 32976839 C A SCG5 Missense_Mutation p.P153Q 0.33 tolerated(0.18) probably_damaging(0.999) TCGA-97-7937-01 15 59172148 59172148 T A SLTM 3'UTR 0.33 TCGA-97-7937-01 15 62939619 62939619 G T TLN2 Missense_Mutation p.R37L 0.30 deleterious(0) benign(0.326) TCGA-97-7937-01 15 64027005 64027005 G T HERC1 Missense_Mutation p.P855H 0.24 probably_damaging(0.999) TCGA-97-7937-01 15 65621255 65621255 C A IGDCC3 Nonsense_Mutation p.E813* 0.34 TCGA-97-7937-01 15 70980144 70980144 G A UACA Missense_Mutation p.P147L 0.30 tolerated(0.39) benign(0.141) TCGA-97-7937-01 15 79058106 79058106 C A ADAMTS7 Missense_Mutation p.A1383S 0.27 tolerated(0.52) benign(0.021) TCGA-97-7937-01 15 99511709 99511709 A T PGPEP1L Nonstop_Mutation p.*197Rext*10 0.18 TCGA-97-7937-01 15 99669911 99669911 C A SYNM Missense_Mutation p.P448Q 0.23 tolerated(0.15) benign(0.094) TCGA-97-7937-01 16 21848679 21848679 G T NPIPB4 Silent p.P343P 0.41 TCGA-97-7937-01 16 21848767 21848767 G A NPIPB4 Missense_Mutation p.P314L 0.12 probably_damaging(0.991) TCGA-97-7937-01 16 22359093 22359093 A C CDR2 Silent p.G186G 0.22 TCGA-97-7937-01 16 2571043 2571043 C T AMDHD2 Silent p.L93L 0.25 TCGA-97-7937-01 16 27818870 27818870 T A GSG1L Missense_Mutation p.E279V 0.40 tolerated_low_confidence(0.14) benign(0.001) TCGA-97-7937-01 16 31154757 31154757 A C PRSS36 Missense_Mutation p.W336G 0.54 deleterious(0) probably_damaging(1) TCGA-97-7937-01 16 31384596 31384596 A T ITGAX Missense_Mutation p.N798I 0.23 tolerated(0.08) possibly_damaging(0.523) TCGA-97-7937-01 16 32077658 32077658 G T IGHV3OR16-9 Silent p.T91T 0.14 TCGA-97-7937-01 16 49670254 49670254 G T ZNF423 Silent p.R937R 0.60 TCGA-97-7937-01 16 55725860 55725860 T A SLC6A2 Missense_Mutation p.F272I 0.57 tolerated(0.31) benign(0.002) TCGA-97-7937-01 16 56667691 56667691 T A MT1M Nonsense_Mutation p.C41* 0.56 TCGA-97-7937-01 16 67188856 67188856 C G TRADD Missense_Mutation p.R212P 0.24 deleterious(0) probably_damaging(0.997) TCGA-97-7937-01 16 67644874 67644874 G T CTCF Missense_Mutation p.G47W 0.30 deleterious_low_confidence(0.01) benign(0.237) TCGA-97-7937-01 16 68713715 68713715 G T CDH3 Missense_Mutation p.M235I 0.28 tolerated(0.16) probably_damaging(0.998) TCGA-97-7937-01 16 69725937 69725937 A T NFAT5 Nonsense_Mutation p.R737* 0.37 TCGA-97-7937-01 16 70513219 70513219 T C FUK Silent p.A1022A 0.40 TCGA-97-7937-01 16 82033819 82033819 C A SDR42E1 Missense_Mutation p.A27S 0.52 tolerated(0.35) benign(0.129) TCGA-97-7937-01 16 87678146 87678146 G T JPH3 Missense_Mutation p.G222V 0.48 deleterious(0) probably_damaging(0.997) TCGA-97-7937-01 16 9858086 9858086 G T GRIN2A Nonsense_Mutation p.Y1105* 0.20 TCGA-97-7937-01 17 10265553 10265553 G T MYH13 Nonsense_Mutation p.Y129* 0.30 TCGA-97-7937-01 17 10302880 10302880 G T MYH8 Missense_Mutation p.A1281E 0.25 deleterious(0.01) possibly_damaging(0.741) TCGA-97-7937-01 17 10351287 10351287 G T MYH4 Missense_Mutation p.L1605M 0.26 deleterious(0) probably_damaging(0.948) TCGA-97-7937-01 17 10427825 10427825 C G MYH2 Missense_Mutation p.E1711D 0.08 deleterious(0.03) probably_damaging(0.961) TCGA-97-7937-01 17 15234527 15234527 G C TEKT3 Missense_Mutation p.R126G 0.23 deleterious(0) probably_damaging(0.974) TCGA-97-7937-01 17 21477512 21477512 C A AC138710.1 5'Flank 0.36 TCGA-97-7937-01 17 27002069 27002069 G T SUPT6H Nonsense_Mutation p.E143* 0.14 TCGA-97-7937-01 17 35300443 35300443 G T LHX1 3'UTR 0.65 TCGA-97-7937-01 17 38487528 38487528 C T RARA Missense_Mutation p.P20S 0.64 deleterious_low_confidence(0.01) benign(0.005) TCGA-97-7937-01 17 39978051 39978051 C A FKBP10 Silent p.G515G 0.21 TCGA-97-7937-01 17 4074090 4074090 G A ANKFY1 Missense_Mutation p.R1111C 0.23 tolerated(0.34) benign(0.024) TCGA-97-7937-01 17 41477375 41477375 G T ARL4D Missense_Mutation p.R92L 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-97-7937-01 17 56349090 56349090 C A MPO Missense_Mutation p.K652N 0.53 deleterious(0.04) benign(0.003) TCGA-97-7937-01 17 59763348 59763348 G A BRIP1 Silent p.T918T 0.19 TCGA-97-7937-01 17 6381910 6381910 C A PITPNM3 Missense_Mutation p.R245I 0.14 deleterious(0.02) benign(0.017) TCGA-97-7937-01 17 66038394 66038394 G T KPNA2 Missense_Mutation p.A166S 0.19 tolerated(0.23) probably_damaging(0.965) TCGA-97-7937-01 17 67148534 67148534 G A ABCA10 Missense_Mutation p.R1409C 0.08 deleterious(0.01) possibly_damaging(0.637) TCGA-97-7937-01 17 7139797 7139797 G C PHF23 Missense_Mutation p.S150C 0.21 tolerated_low_confidence(0.13) benign(0.439) TCGA-97-7937-01 17 72346895 72346895 C G KIF19 Missense_Mutation p.R480G 0.18 deleterious(0.01) benign(0.016) TCGA-97-7937-01 17 73566089 73566089 G T LLGL2 Nonsense_Mutation p.E543* 0.51 TCGA-97-7937-01 17 74289852 74289852 C T QRICH2 Missense_Mutation p.R153H 0.07 tolerated(0.12) benign(0.011) TCGA-97-7937-01 17 74569353 74569353 C A ST6GALNAC2 Missense_Mutation p.A152S 0.63 probably_damaging(1) TCGA-97-7937-01 17 74720008 74720008 G A JMJD6 Silent p.L217L 0.53 TCGA-97-7937-01 17 7577547 7577547 C A TP53 Missense_Mutation p.G245V 0.21 deleterious(0) probably_damaging(1) TCGA-97-7937-01 17 7646377 7646377 C A DNAH2 Missense_Mutation p.D607E 0.21 benign(0.019) TCGA-97-7937-01 17 76695001 76695001 C A CYTH1 Silent p.L200L 0.14 TCGA-97-7937-01 17 7720969 7720969 G T DNAH2 Missense_Mutation p.G3371W 0.26 probably_damaging(1) TCGA-97-7937-01 17 78063594 78063594 C T CCDC40 Nonsense_Mutation p.Q915* 0.21 TCGA-97-7937-01 17 78184803 78184803 C A SGSH Silent p.T319T 0.10 TCGA-97-7937-01 18 12358888 12358888 G A AFG3L2 Silent p.Y269Y 0.23 TCGA-97-7937-01 18 180238 180238 G A USP14 Missense_Mutation p.M101I 0.68 tolerated(0.18) benign(0.007) TCGA-97-7937-01 18 21113343 21113343 G T NPC1 Missense_Mutation p.L1244I 0.05 deleterious(0) probably_damaging(1) TCGA-97-7937-01 18 25543382 25543382 G T CDH2 Missense_Mutation p.P818H 0.40 tolerated(0.14) benign(0.052) TCGA-97-7937-01 18 25543383 25543383 G T CDH2 Missense_Mutation p.P818T 0.42 deleterious(0) possibly_damaging(0.688) TCGA-97-7937-01 18 2890886 2890886 C A EMILIN2 Missense_Mutation p.T254N 0.58 tolerated(1) benign(0.001) TCGA-97-7937-01 18 30992018 30992018 G A CCDC178 Missense_Mutation p.T12I 0.13 tolerated_low_confidence(0.3) possibly_damaging(0.6) TCGA-97-7937-01 18 40695453 40695453 G T RIT2 Missense_Mutation p.P11Q 0.38 tolerated(0.14) benign(0.024) TCGA-97-7937-01 18 40695454 40695454 G T RIT2 Missense_Mutation p.P11T 0.37 tolerated(0.21) benign(0) TCGA-97-7937-01 18 42530157 42530157 G T SETBP1 Silent p.L284L 0.30 TCGA-97-7937-01 18 46917985 46917985 G T DYM Silent p.T57T 0.47 TCGA-97-7937-01 18 48575058 48575058 G T SMAD4 Silent p.V84V 0.24 TCGA-97-7937-01 18 56205108 56205108 G T ALPK2 Missense_Mutation p.P771T 0.42 deleterious(0.01) possibly_damaging(0.626) TCGA-97-7937-01 18 61471695 61471695 C - SERPINB7 Frame_Shift_Del p.H323Qfs*5 0.61 TCGA-97-7937-01 18 74091788 74091788 G A ZNF516 Missense_Mutation p.P761L 0.28 tolerated(0.12) probably_damaging(0.998) TCGA-97-7937-01 19 10254626 10254626 C - DNMT1 Frame_Shift_Del p.E978Sfs*171 0.07 TCGA-97-7937-01 19 1362247 1362247 A G MUM1 Splice_Site p.X372_splice 0.32 TCGA-97-7937-01 19 15082612 15082612 C G SLC1A6 Missense_Mutation p.E94Q 0.31 deleterious(0) benign(0.188) TCGA-97-7937-01 19 15166240 15166240 G T CASP14 Splice_Site p.X174_splice 0.30 TCGA-97-7937-01 19 15281310 15281310 G A NOTCH3 Missense_Mutation p.A1649V 0.08 tolerated(1) benign(0.001) TCGA-97-7937-01 19 17514602 17514602 C A BST2 Missense_Mutation p.A149S 0.41 tolerated(0.36) benign(0.032) TCGA-97-7937-01 19 17651213 17651213 G T FAM129C Missense_Mutation p.G362V 0.22 deleterious(0.04) probably_damaging(0.909) TCGA-97-7937-01 19 18004572 18004572 C A SLC5A5 Silent p.P606P 0.53 TCGA-97-7937-01 19 18576628 18576628 C A ELL Missense_Mutation p.C95F 0.42 deleterious(0) probably_damaging(1) TCGA-97-7937-01 19 19330057 19330057 G T NCAN Missense_Mutation p.G136V 0.25 deleterious(0) probably_damaging(1) TCGA-97-7937-01 19 21910143 21910143 T C ZNF100 Missense_Mutation p.K324R 0.32 deleterious(0.05) benign(0.025) TCGA-97-7937-01 19 21910147 21910147 C A ZNF100 Missense_Mutation p.G323C 0.33 deleterious(0) probably_damaging(0.995) TCGA-97-7937-01 19 22785282 22785282 C A AC011467.1 5'Flank 0.56 TCGA-97-7937-01 19 23328697 23328697 A G ZNF730 Missense_Mutation p.Y284C 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-97-7937-01 19 2733240 2733240 C A SLC39A3 Missense_Mutation p.G152C 0.33 deleterious(0.03) possibly_damaging(0.746) TCGA-97-7937-01 19 31768367 31768367 C T TSHZ3 Missense_Mutation p.D778N 0.15 tolerated(0.3) benign(0.009) TCGA-97-7937-01 19 33490580 33490580 C T RHPN2 Silent p.E379E 0.09 TCGA-97-7937-01 19 35791212 35791212 T A MAG Missense_Mutation p.L292Q 0.36 deleterious(0) probably_damaging(0.989) TCGA-97-7937-01 19 36333395 36333395 T C NPHS1 Missense_Mutation p.T798A 0.09 deleterious(0.02) benign(0.202) TCGA-97-7937-01 19 36339557 36339557 C A NPHS1 Missense_Mutation p.M384I 0.26 deleterious(0) benign(0.003) TCGA-97-7937-01 19 37854448 37854448 G T HKR1 Missense_Mutation p.C584F 0.31 deleterious(0) possibly_damaging(0.552) TCGA-97-7937-01 19 37879792 37879792 G A ZNF527 Missense_Mutation p.D281N 0.18 deleterious(0.04) benign(0.001) TCGA-97-7937-01 19 38901791 38901791 G T RASGRP4 Missense_Mutation p.P606T 0.45 deleterious(0.04) benign(0.08) TCGA-97-7937-01 19 3917771 3917771 G C ATCAY Missense_Mutation p.E333Q 0.31 deleterious(0) possibly_damaging(0.486) TCGA-97-7937-01 19 39299514 39299514 C - LGALS4 Frame_Shift_Del p.G70Afs*37 0.37 TCGA-97-7937-01 19 39759454 39759454 T A IFNL2 Missense_Mutation p.S50T 0.36 deleterious(0.02) benign(0.422) TCGA-97-7937-01 19 41062044 41062044 G T SPTBN4 Missense_Mutation p.K1713N 0.50 deleterious(0) probably_damaging(0.999) TCGA-97-7937-01 19 41388126 41388126 A G CYP2A7 5'UTR 0.10 TCGA-97-7937-01 19 43414963 43414963 C T PSG6 Missense_Mutation p.E159K 0.08 deleterious(0.04) probably_damaging(0.919) TCGA-97-7937-01 19 44097349 44097349 T C IRGQ Missense_Mutation p.D234G 0.16 tolerated(1) benign(0.032) TCGA-97-7937-01 19 45731239 45731239 G A EXOC3L2 Silent p.L96L 0.19 TCGA-97-7937-01 19 47127112 47127112 G C PTGIR Missense_Mutation p.P124R 0.50 deleterious(0) probably_damaging(1) TCGA-97-7937-01 19 47824025 47824025 G T C5AR1 Nonsense_Mutation p.E331* 0.19 TCGA-97-7937-01 19 47996754 47996754 G A NAPA Intron 0.24 TCGA-97-7937-01 19 52131257 52131257 G - SIGLEC5 Frame_Shift_Del p.P276Lfs*4 0.23 TCGA-97-7937-01 19 53644353 53644353 C A ZNF347 Missense_Mutation p.K577N 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-97-7937-01 19 54942294 54942296 GGA - TTYH1 In_Frame_Del p.E352del 0.18 TCGA-97-7937-01 19 55294961 55294961 T C KIR2DL1 Missense_Mutation p.S281P 0.05 tolerated(1) benign(0) TCGA-97-7937-01 19 56539104 56539104 A G NLRP5 Missense_Mutation p.H502R 0.22 deleterious(0.01) benign(0.001) TCGA-97-7937-01 19 56688566 56688566 T C GALP Splice_Site p.X29_splice 0.18 TCGA-97-7937-01 19 7743422 7743422 G T CTD-3214H19.16 Missense_Mutation p.W13L 0.25 tolerated_low_confidence(0.06) possibly_damaging(0.504) TCGA-97-7937-01 19 9006391 9006391 G C MUC16 Missense_Mutation p.S13209R 0.10 possibly_damaging(0.502) TCGA-97-7937-01 19 9017345 9017345 C T MUC16 Splice_Site p.X12660_splice 0.29 TCGA-97-7937-01 1 100350258 100350258 T G AGL Missense_Mutation p.S894A 0.24 tolerated(0.83) benign(0.001) TCGA-97-7937-01 1 103388946 103388946 C A COL11A1 Splice_Site p.X1201_splice 0.32 TCGA-97-7937-01 1 103444427 103444427 G T COL11A1 Missense_Mutation p.P900T 0.45 unknown(0) TCGA-97-7937-01 1 107867328 107867328 A T NTNG1 Missense_Mutation p.E224V 0.30 deleterious(0) probably_damaging(1) TCGA-97-7937-01 1 109265024 109265024 G T FNDC7 Missense_Mutation p.W222C 0.27 deleterious(0.03) benign(0.111) TCGA-97-7937-01 1 110086448 110086448 C A GPR61 Missense_Mutation p.S268R 0.18 deleterious(0.05) benign(0.133) TCGA-97-7937-01 1 110168042 110168042 A T AMPD2 Missense_Mutation p.K124M 0.26 deleterious(0) probably_damaging(0.998) TCGA-97-7937-01 1 110734689 110734689 C A SLC6A17 Silent p.S320S 0.17 TCGA-97-7937-01 1 111061202 111061202 A G KCNA10 Missense_Mutation p.Y70H 0.18 tolerated_low_confidence(0.54) benign(0.229) TCGA-97-7937-01 1 112524243 112524243 C A KCND3 Missense_Mutation p.G369V 0.21 deleterious(0) benign(0.02) TCGA-97-7937-01 1 119923274 119923274 G T HAO2 Intron 0.23 TCGA-97-7937-01 1 13743067 13743067 G C PRAMEF20 Missense_Mutation p.D86H 0.15 deleterious(0.03) probably_damaging(1) TCGA-97-7937-01 1 144598686 144598686 C A RP11-640M9.2 RNA 0.16 TCGA-97-7937-01 1 152187608 152187608 G T HRNR Missense_Mutation p.S2166Y 0.04 unknown(0) TCGA-97-7937-01 1 152190785 152190785 G T HRNR Missense_Mutation p.S1107Y 0.33 unknown(0) TCGA-97-7937-01 1 152192921 152192921 C G HRNR Missense_Mutation p.R395P 0.05 unknown(0) TCGA-97-7937-01 1 152284538 152284538 G T FLG Missense_Mutation p.Q942K 0.18 possibly_damaging(0.795) TCGA-97-7937-01 1 152777857 152777857 C A LCE1C Missense_Mutation p.C33F 0.17 deleterious_low_confidence(0) unknown(0) TCGA-97-7937-01 1 156811930 156811930 G T INSRR Missense_Mutation p.S1124Y 0.52 deleterious(0) probably_damaging(0.982) TCGA-97-7937-01 1 156821946 156821946 C A INSRR Missense_Mutation p.R225S 0.54 tolerated(0.91) benign(0.002) TCGA-97-7937-01 1 156846278 156846278 G T NTRK1 Silent p.V573V 0.53 TCGA-97-7937-01 1 160091019 160091019 A T ATP1A2 Missense_Mutation p.K52I 0.24 deleterious(0) benign(0.435) TCGA-97-7937-01 1 160122952 160122952 C A ATP1A4 Intron 0.14 TCGA-97-7937-01 1 173616018 173616019 GA - ANKRD45 Frame_Shift_Del p.Q155Dfs*2 0.30 TCGA-97-7937-01 1 175304922 175304922 C A TNR Missense_Mutation p.G1186C 0.48 deleterious(0.04) probably_damaging(1) TCGA-97-7937-01 1 17597416 17597416 C G PADI3 Missense_Mutation p.R292G 0.36 deleterious(0.01) possibly_damaging(0.878) TCGA-97-7937-01 1 17597417 17597417 G A PADI3 Missense_Mutation p.R292Q 0.38 deleterious(0) benign(0.409) TCGA-97-7937-01 1 176668241 176668241 C T PAPPA2 Missense_Mutation p.P918S 0.17 deleterious(0) probably_damaging(1) TCGA-97-7937-01 1 183556105 183556105 G A NCF2 Missense_Mutation p.T61I 0.53 tolerated(0.06) possibly_damaging(0.612) TCGA-97-7937-01 1 190423851 190423851 G T BRINP3 Nonsense_Mutation p.S57* 0.17 TCGA-97-7937-01 1 19181170 19181170 T A TAS1R2 Missense_Mutation p.Q265L 0.36 tolerated(0.47) benign(0.013) TCGA-97-7937-01 1 196659293 196659293 C A CFH Nonsense_Mutation p.Y420* 0.22 TCGA-97-7937-01 1 196801041 196801041 G A CFHR1 Missense_Mutation p.R302Q 0.28 tolerated(0.3) benign(0.236) TCGA-97-7937-01 1 200880740 200880740 C T C1orf106 Silent p.G373G 0.56 TCGA-97-7937-01 1 200943242 200943242 C T KIF21B Missense_Mutation p.R1632H 0.41 deleterious_low_confidence(0.01) probably_damaging(0.964) TCGA-97-7937-01 1 201196064 201196064 C A IGFN1 Missense_Mutation p.P3614H 0.28 probably_damaging(1) TCGA-97-7937-01 1 204913465 204913466 - T NFASC Frame_Shift_Ins p.P8Lfs*29 0.22 TCGA-97-7937-01 1 207867838 207867838 G A CR1L Missense_Mutation p.E202K 0.20 deleterious(0.04) possibly_damaging(0.595) TCGA-97-7937-01 1 20811778 20811778 G T CAMK2N1 Missense_Mutation p.T32N 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.895) TCGA-97-7937-01 1 228479795 228479795 G T OBSCN Missense_Mutation p.M3941I 0.23 benign(0.011) TCGA-97-7937-01 1 22903141 22903141 C A EPHA8 Silent p.L197L 0.34 TCGA-97-7937-01 1 22974075 22974075 C T C1QC Silent p.C179C 0.07 TCGA-97-7937-01 1 23405646 23405646 G A KDM1A Silent p.R677R 0.13 TCGA-97-7937-01 1 235600748 235600748 A T TBCE Missense_Mutation p.I359F 0.48 deleterious(0) probably_damaging(0.989) TCGA-97-7937-01 1 236902629 236902629 C T ACTN2 Missense_Mutation p.P302S 0.41 tolerated(0.09) possibly_damaging(0.888) TCGA-97-7937-01 1 237732488 237732488 G A RYR2 Nonsense_Mutation p.W1156* 0.37 TCGA-97-7937-01 1 237732489 237732489 G T RYR2 Missense_Mutation p.W1156C 0.36 probably_damaging(1) TCGA-97-7937-01 1 238090543 238090543 C A RP11-193H5.1 RNA 0.24 TCGA-97-7937-01 1 242159682 242159682 C A MAP1LC3C Missense_Mutation p.R76L 0.17 deleterious(0) benign(0.423) TCGA-97-7937-01 1 247836166 247836166 G T OR13G1 Missense_Mutation p.L60I 0.47 tolerated(0.12) probably_damaging(0.991) TCGA-97-7937-01 1 248814116 248814116 G A OR2T27 Missense_Mutation p.P24S 0.18 tolerated(0.49) benign(0.004) TCGA-97-7937-01 1 249211545 249211545 C A PGBD2 Nonsense_Mutation p.C254* 0.06 TCGA-97-7937-01 1 34666502 34666502 C A C1orf94 Missense_Mutation p.T380N 0.16 deleterious_low_confidence(0.01) benign(0.201) TCGA-97-7937-01 1 34666503 34666503 C A C1orf94 Silent p.T380T 0.17 TCGA-97-7937-01 1 34666504 34666504 C A C1orf94 Missense_Mutation p.L381M 0.17 tolerated_low_confidence(0.09) probably_damaging(0.945) TCGA-97-7937-01 1 40432551 40432551 G T MFSD2A Missense_Mutation p.G305C 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-97-7937-01 1 44441782 44441782 C G ATP6V0B Missense_Mutation p.P46R 0.21 deleterious(0) probably_damaging(1) TCGA-97-7937-01 1 47611765 47611765 G T CYP4A22 Missense_Mutation p.R435L 0.22 deleterious(0) possibly_damaging(0.614) TCGA-97-7937-01 1 59248305 59248305 C A JUN Silent p.A146A 0.29 TCGA-97-7937-01 1 6526149 6526149 C A TNFRSF25 Missense_Mutation p.G7C 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.843) TCGA-97-7937-01 1 7527940 7527940 G C CAMTA1 Silent p.R163R 0.25 TCGA-97-7937-01 1 84373287 84373287 C A TTLL7 Missense_Mutation p.S615I 0.39 tolerated(0.16) benign(0.025) TCGA-97-7937-01 1 92442881 92442881 C A BRDT Missense_Mutation p.D300E 0.27 deleterious(0) possibly_damaging(0.734) TCGA-97-7937-01 20 24645992 24645992 C G SYNDIG1 Missense_Mutation p.A210G 0.18 deleterious(0.03) benign(0.041) TCGA-97-7937-01 20 2596792 2596792 G T TMC2 Missense_Mutation p.A628S 0.12 tolerated(0.26) benign(0.034) TCGA-97-7937-01 20 3128579 3128579 T C FASTKD5 Missense_Mutation p.I380V 0.13 tolerated(1) benign(0.002) TCGA-97-7937-01 20 44540099 44540099 G T PLTP 5'UTR 0.12 TCGA-97-7937-01 20 47887258 47887258 C A ZNFX1 Missense_Mutation p.S364I 0.28 deleterious(0) possibly_damaging(0.677) TCGA-97-7937-01 20 55746136 55746136 G C BMP7 Missense_Mutation p.P392R 0.49 deleterious(0) probably_damaging(1) TCGA-97-7937-01 20 57251381 57251381 G T STX16 3'UTR 0.38 TCGA-97-7937-01 20 57480483 57480483 C T GNAS Missense_Mutation p.R803C 0.05 deleterious(0.01) benign(0.287) TCGA-97-7937-01 20 61444144 61444144 G T OGFR Nonsense_Mutation p.E393* 0.48 TCGA-97-7937-01 20 8698344 8698344 C G PLCB1 Missense_Mutation p.S454R 0.34 deleterious(0) probably_damaging(0.994) TCGA-97-7937-01 20 8745828 8745828 C T PLCB1 Missense_Mutation p.S918L 0.42 tolerated(0.25) benign(0.004) TCGA-97-7937-01 20 9538263 9538263 C T PAK7 Missense_Mutation p.D579N 0.18 deleterious(0.01) probably_damaging(0.917) TCGA-97-7937-01 21 10921972 10921972 C A TPTE Missense_Mutation p.A351S 0.26 tolerated(0.06) possibly_damaging(0.466) TCGA-97-7937-01 21 15399866 15399866 G T AP001347.6 RNA 0.34 TCGA-97-7937-01 21 19732101 19732101 C A TMPRSS15 Missense_Mutation p.G285C 0.26 deleterious(0) probably_damaging(1) TCGA-97-7937-01 21 30699067 30699067 C - BACH1 Frame_Shift_Del p.P308Lfs*8 0.14 TCGA-97-7937-01 21 32624181 32624181 C T TIAM1 Missense_Mutation p.A430T 0.29 tolerated(0.17) benign(0.002) TCGA-97-7937-01 21 35122620 35122620 T C ITSN1 Silent p.A173A 0.13 TCGA-97-7937-01 21 40871829 40871829 C T SH3BGR Silent p.A194A 0.15 TCGA-97-7937-01 22 16256642 16256642 C A POTEH 3'UTR 0.20 TCGA-97-7937-01 22 23235924 23235924 G A IGLL5 Nonsense_Mutation p.W84* 0.32 TCGA-97-7937-01 22 29908010 29908010 C A THOC5 Silent p.R599R 0.20 TCGA-97-7937-01 22 30136662 30136662 T A ZMAT5 Missense_Mutation p.Q83L 0.47 tolerated(0.35) benign(0.007) TCGA-97-7937-01 22 32464549 32464549 C A SLC5A1 Missense_Mutation p.L147I 0.18 tolerated(0.39) benign(0.002) TCGA-97-7937-01 22 35480424 35480424 G T ISX Missense_Mutation p.G144C 0.26 deleterious(0) probably_damaging(0.983) TCGA-97-7937-01 22 44342629 44342629 T A PNPLA3 3'UTR 0.33 TCGA-97-7937-01 22 44464964 44464964 G C PARVB Intron 0.15 TCGA-97-7937-01 22 45937139 45937139 C A FBLN1 Missense_Mutation p.P318Q 0.18 deleterious(0) probably_damaging(0.991) TCGA-97-7937-01 22 50752104 50752104 C A DENND6B Missense_Mutation p.R418L 0.64 deleterious(0) possibly_damaging(0.519) TCGA-97-7937-01 2 109964268 109964268 G A SH3RF3 Missense_Mutation p.G238S 0.33 tolerated(0.06) probably_damaging(0.915) TCGA-97-7937-01 2 112686861 112686861 G T MERTK Nonsense_Mutation p.G76* 0.15 TCGA-97-7937-01 2 131521341 131521341 C A AMER3 Missense_Mutation p.Q566K 0.20 tolerated(0.32) benign(0.021) TCGA-97-7937-01 2 133174748 133174748 C T GPR39 Missense_Mutation p.L45F 0.21 deleterious(0) benign(0.021) TCGA-97-7937-01 2 136567006 136567006 C T LCT Missense_Mutation p.V971M 0.23 deleterious(0) probably_damaging(0.998) TCGA-97-7937-01 2 136873558 136873558 G C CXCR4 5'UTR 0.30 TCGA-97-7937-01 2 141709435 141709435 C A LRP1B Missense_Mutation p.D988Y 0.09 probably_damaging(0.996) TCGA-97-7937-01 2 141819784 141819784 C G LRP1B Missense_Mutation p.G358R 0.48 probably_damaging(0.953) TCGA-97-7937-01 2 148701024 148701024 C A ORC4 Missense_Mutation p.R277L 0.11 tolerated(0.06) benign(0.051) TCGA-97-7937-01 2 152408338 152408338 C A NEB Missense_Mutation p.V6620L 0.30 benign(0.057) TCGA-97-7937-01 2 155555453 155555453 C A KCNJ3 Missense_Mutation p.Q56K 0.48 tolerated(0.27) benign(0.247) TCGA-97-7937-01 2 157184479 157184479 T G NR4A2 Missense_Mutation p.K348Q 0.50 deleterious(0) probably_damaging(0.999) TCGA-97-7937-01 2 163074507 163074507 G C FAP Missense_Mutation p.P251A 0.11 deleterious(0.04) possibly_damaging(0.898) TCGA-97-7937-01 2 179642637 179642637 G T TTN Missense_Mutation p.A1425E 0.34 TCGA-97-7937-01 2 183070793 183070793 C A PDE1A Splice_Site p.X275_splice 0.14 TCGA-97-7937-01 2 183853815 183853815 C A NCKAP1 Missense_Mutation p.R303L 0.50 deleterious(0) probably_damaging(0.944) TCGA-97-7937-01 2 185800708 185800708 A - ZNF804A Frame_Shift_Del p.N197Ifs*28 0.18 TCGA-97-7937-01 2 201888717 201888717 G A FAM126B Missense_Mutation p.R6C 0.39 deleterious(0) possibly_damaging(0.614) TCGA-97-7937-01 2 217142435 217142435 G T MARCH4 Silent p.I275I 0.20 TCGA-97-7937-01 2 225717798 225717798 T C DOCK10 Missense_Mutation p.M644V 0.25 tolerated(0.32) benign(0) TCGA-97-7937-01 2 226446778 226446778 T C NYAP2 Silent p.H215H 0.06 TCGA-97-7937-01 2 226447461 226447461 G T NYAP2 Missense_Mutation p.G443V 0.48 deleterious(0) probably_damaging(0.935) TCGA-97-7937-01 2 233675975 233675975 G T GIGYF2 Missense_Mutation p.L661F 0.23 probably_damaging(0.971) TCGA-97-7937-01 2 233899170 233899170 G T NEU2 Silent p.R182R 0.33 TCGA-97-7937-01 2 239057702 239057702 G T KLHL30 Missense_Mutation p.R465L 0.18 deleterious(0.01) possibly_damaging(0.815) TCGA-97-7937-01 2 241666337 241666337 G T KIF1A Missense_Mutation p.A1343D 0.46 deleterious(0) benign(0.252) TCGA-97-7937-01 2 27840351 27840351 G T ZNF512 Silent p.V436V 0.36 TCGA-97-7937-01 2 27907997 27907997 G A SLC4A1AP Missense_Mutation p.E657K 0.40 tolerated(0.07) benign(0.175) TCGA-97-7937-01 2 33246135 33246135 G - LTBP1 Frame_Shift_Del p.G243Afs*27 0.18 TCGA-97-7937-01 2 3502710 3502710 C T ADI1 3'UTR 0.26 TCGA-97-7937-01 2 3749982 3749982 T C ALLC Silent p.D335D 0.20 TCGA-97-7937-01 2 44053653 44053653 C T ABCG5 Missense_Mutation p.M214I 0.29 tolerated(0.34) benign(0.034) TCGA-97-7937-01 2 60687643 60687643 A G BCL11A Missense_Mutation p.C802R 0.31 deleterious(0) probably_damaging(0.996) TCGA-97-7937-01 2 80874880 80874880 C A CTNNA2 Silent p.P867P 0.36 TCGA-97-7937-01 2 80874881 80874881 C A CTNNA2 Missense_Mutation p.L868I 0.36 deleterious(0.05) probably_damaging(0.999) TCGA-97-7937-01 2 95846908 95846908 G T ZNF2 Missense_Mutation p.R112M 0.14 tolerated(0.2) benign(0.031) TCGA-97-7937-01 3 100365486 100365486 C T GPR128 Missense_Mutation p.T395I 0.51 deleterious(0) probably_damaging(1) TCGA-97-7937-01 3 113440559 113440559 C G NAA50 3'UTR 0.35 TCGA-97-7937-01 3 119367247 119367247 C G POPDC2 Missense_Mutation p.C290S 0.48 tolerated(0.71) benign(0.001) TCGA-97-7937-01 3 130284056 130284056 C A COL6A6 Missense_Mutation p.Q294K 0.50 tolerated(0.06) benign(0.069) TCGA-97-7937-01 3 13546094 13546094 C G HDAC11 Missense_Mutation p.L319V 0.11 deleterious(0) probably_damaging(1) TCGA-97-7937-01 3 137849858 137849858 A T A4GNT Missense_Mutation p.W81R 0.48 tolerated(1) benign(0) TCGA-97-7937-01 3 154042092 154042092 T A DHX36 Silent p.G38G 0.67 TCGA-97-7937-01 3 15531057 15531057 G A COLQ Missense_Mutation p.P65L 0.11 tolerated(0.08) probably_damaging(0.999) TCGA-97-7937-01 3 167189680 167189680 C A SERPINI2 Intron 0.56 TCGA-97-7937-01 3 197273292 197273292 C A BDH1 Missense_Mutation p.R8I 0.51 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-97-7937-01 3 46622811 46622811 G T TDGF1 3'UTR 0.57 TCGA-97-7937-01 3 53326317 53326317 G A DCP1A Missense_Mutation p.L389F 0.28 tolerated(0.5) benign(0.011) TCGA-97-7937-01 3 62751566 62751566 C A CADPS Missense_Mutation p.A179S 0.55 deleterious(0.03) possibly_damaging(0.515) TCGA-97-7937-01 3 65438997 65438997 T C MAGI1 Silent p.T326T 0.63 TCGA-97-7937-01 3 96962882 96962882 G T EPHA6 Missense_Mutation p.G453W 0.33 deleterious(0) probably_damaging(1) TCGA-97-7937-01 3 96962883 96962883 G T EPHA6 Missense_Mutation p.G453V 0.33 deleterious(0.01) probably_damaging(1) TCGA-97-7937-01 3 97887720 97887720 G T OR5H15 Missense_Mutation p.M59I 0.54 deleterious(0.02) possibly_damaging(0.589) TCGA-97-7937-01 4 100515986 100515986 G - MTTP Frame_Shift_Del p.A286Pfs*63 0.28 TCGA-97-7937-01 4 10078942 10078942 C A WDR1 Missense_Mutation p.R567I 0.12 deleterious(0.02) possibly_damaging(0.779) TCGA-97-7937-01 4 10445615 10445615 C A ZNF518B Missense_Mutation p.V780F 0.11 deleterious(0.02) benign(0.026) TCGA-97-7937-01 4 10445616 10445616 C A ZNF518B Missense_Mutation p.R779S 0.10 deleterious(0) possibly_damaging(0.796) TCGA-97-7937-01 4 109663733 109663733 G T ETNPPL Missense_Mutation p.D469E 0.14 tolerated_low_confidence(0.28) benign(0.002) TCGA-97-7937-01 4 109753571 109753571 C A COL25A1 Nonsense_Mutation p.G559* 0.26 TCGA-97-7937-01 4 114279924 114279924 C G ANK2 Missense_Mutation p.P3384A 0.15 benign(0.007) TCGA-97-7937-01 4 134072734 134072734 C A PCDH10 Missense_Mutation p.A480D 0.09 deleterious(0.02) probably_damaging(1) TCGA-97-7937-01 4 153896290 153896290 C T FHDC1 Missense_Mutation p.S616L 0.15 tolerated(0.27) benign(0.006) TCGA-97-7937-01 4 155287395 155287395 C T DCHS2 Missense_Mutation p.V221M 0.16 tolerated(0.38) benign(0.226) TCGA-97-7937-01 4 159520580 159520580 C T RXFP1 Missense_Mutation p.A130V 0.17 tolerated(0.4) benign(0.001) TCGA-97-7937-01 4 162459355 162459355 G C FSTL5 Missense_Mutation p.I425M 0.20 deleterious(0) probably_damaging(0.991) TCGA-97-7937-01 4 166795155 166795155 T C TLL1 Silent p.Y33Y 0.40 TCGA-97-7937-01 4 20530694 20530694 G C SLIT2 Missense_Mutation p.E529Q 0.22 tolerated(0.16) benign(0.065) TCGA-97-7937-01 4 22749343 22749343 G T GBA3 Silent p.V237V 0.09 TCGA-97-7937-01 4 25780734 25780734 A C SEL1L3 Missense_Mutation p.L850R 0.13 deleterious(0) probably_damaging(0.955) TCGA-97-7937-01 4 55962478 55962478 G T KDR Silent p.L882L 0.25 TCGA-97-7937-01 4 57891066 57891066 G T POLR2B Missense_Mutation p.K993N 0.31 tolerated(0.31) possibly_damaging(0.561) TCGA-97-7937-01 4 68797728 68797728 G T TMPRSS11A Missense_Mutation p.N104K 0.11 deleterious(0.01) possibly_damaging(0.653) TCGA-97-7937-01 4 69533895 69533895 T A UGT2B15 Missense_Mutation p.T246S 0.38 deleterious(0.04) possibly_damaging(0.58) TCGA-97-7937-01 4 70505078 70505078 G T UGT2A2 Missense_Mutation p.S94Y 0.22 tolerated(0.14) benign(0.188) TCGA-97-7937-01 4 74606352 74606352 G A IL8 5'UTR 0.29 TCGA-97-7937-01 4 83996468 83996468 C T COPS4 Missense_Mutation p.T369M 0.29 tolerated(0.13) benign(0.012) TCGA-97-7937-01 4 85560101 85560101 G C CDS1 Missense_Mutation p.G279R 0.33 deleterious(0) probably_damaging(1) TCGA-97-7937-01 4 89410360 89410363 AAGA - HERC5 Frame_Shift_Del p.R671Sfs*6 0.11 TCGA-97-7937-01 4 95194771 95194771 C G SMARCAD1 Missense_Mutation p.L526V 0.27 deleterious(0) probably_damaging(1) TCGA-97-7937-01 5 1057703 1057703 G A SLC12A7 Missense_Mutation p.A970V 0.23 tolerated(0.13) benign(0.044) TCGA-97-7937-01 5 110428091 110428091 G A WDR36 Silent p.L35L 0.65 TCGA-97-7937-01 5 110679794 110679794 G T CAMK4 Missense_Mutation p.K78N 0.21 deleterious(0.03) benign(0.278) TCGA-97-7937-01 5 128430635 128430635 G A ISOC1 Missense_Mutation p.G59D 0.67 tolerated_low_confidence(0.19) benign(0.003) TCGA-97-7937-01 5 130515787 130515787 G - LYRM7 Splice_Site p.X7_splice 0.38 TCGA-97-7937-01 5 1323984 1323984 C A CLPTM1L Missense_Mutation p.A400S 0.66 tolerated(0.17) possibly_damaging(0.893) TCGA-97-7937-01 5 137495798 137495798 C T BRD8 Missense_Mutation p.R831Q 0.12 deleterious(0) probably_damaging(0.994) TCGA-97-7937-01 5 139218323 139218323 C A PSD2 Missense_Mutation p.P645H 0.38 deleterious(0) probably_damaging(0.987) TCGA-97-7937-01 5 139218355 139218355 C A PSD2 Missense_Mutation p.Q656K 0.45 tolerated(0.13) benign(0.077) TCGA-97-7937-01 5 140589465 140589465 G T PCDHB12 Missense_Mutation p.G329V 0.56 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-97-7937-01 5 140743982 140743982 G A PCDHGA5 Missense_Mutation p.G29R 0.53 tolerated_low_confidence(0.17) benign(0.146) TCGA-97-7937-01 5 140753830 140753830 G A PCDHGA6 Silent p.A60A 0.41 TCGA-97-7937-01 5 143307 143307 G T PLEKHG4B Missense_Mutation p.Q185H 0.51 tolerated(0.12) possibly_damaging(0.79) TCGA-97-7937-01 5 14769250 14769250 C A ANKH Silent p.L49L 0.09 TCGA-97-7937-01 5 16091127 16091127 G C MARCH11 Missense_Mutation p.L253V 0.58 tolerated(0.11) probably_damaging(0.968) TCGA-97-7937-01 5 167943881 167943881 C G RARS Missense_Mutation p.I517M 0.24 deleterious(0) possibly_damaging(0.817) TCGA-97-7937-01 5 19520842 19520842 A G CDH18 Missense_Mutation p.L479P 0.12 deleterious(0) probably_damaging(0.983) TCGA-97-7937-01 5 205459 205459 C A CCDC127 Nonsense_Mutation p.E246* 0.64 TCGA-97-7937-01 5 40955492 40955492 C T C7 Missense_Mutation p.T366I 0.13 tolerated(0.21) benign(0.152) TCGA-97-7937-01 5 41853623 41853623 C A OXCT1 Silent p.R104R 0.08 TCGA-97-7937-01 5 5463945 5463945 G T KIAA0947 Missense_Mutation p.G1500C 0.05 deleterious(0) probably_damaging(0.997) TCGA-97-7937-01 5 67576452 67576452 T G PIK3R1 Nonsense_Mutation p.L244* 0.11 TCGA-97-7937-01 5 7873601 7873601 C T MTRR Missense_Mutation p.P109L 0.15 deleterious(0.01) possibly_damaging(0.672) TCGA-97-7937-01 5 89705515 89705515 T C CETN3 5'UTR 0.18 TCGA-97-7937-01 6 106553457 106553457 A - PRDM1 Frame_Shift_Del p.A475Pfs*31 0.09 TCGA-97-7937-01 6 126080295 126080295 T C HEY2 Missense_Mutation p.F121L 0.09 deleterious(0) benign(0.193) TCGA-97-7937-01 6 127797417 127797417 G A SOGA3 Missense_Mutation p.A585V 0.31 deleterious(0) probably_damaging(0.995) TCGA-97-7937-01 6 138655328 138655328 G T KIAA1244 Missense_Mutation p.R1782M 0.29 tolerated(0.22) possibly_damaging(0.778) TCGA-97-7937-01 6 151857490 151857490 G T CCDC170 Missense_Mutation p.R32L 0.27 deleterious(0) possibly_damaging(0.702) TCGA-97-7937-01 6 160557608 160557608 G T SLC22A1 Missense_Mutation p.K329N 0.35 tolerated(0.08) benign(0.443) TCGA-97-7937-01 6 25466175 25466175 T A LRRC16A Missense_Mutation p.L230Q 0.35 deleterious(0.02) probably_damaging(0.953) TCGA-97-7937-01 6 25466178 25466178 T G LRRC16A Splice_Site p.X230_splice 0.36 TCGA-97-7937-01 6 25771161 25771161 G T SLC17A4 Missense_Mutation p.M209I 0.11 tolerated(0.59) benign(0.077) TCGA-97-7937-01 6 26031935 26031935 C T HIST1H3B Silent p.V118V 0.05 TCGA-97-7937-01 6 26216739 26216739 C A HIST1H2BG Missense_Mutation p.V45L 0.21 deleterious_low_confidence(0.02) benign(0.042) TCGA-97-7937-01 6 29080190 29080190 C A OR2J3 Missense_Mutation p.R175S 0.32 deleterious(0.04) benign(0.165) TCGA-97-7937-01 6 40360552 40360552 C G LRFN2 Silent p.T500T 0.22 TCGA-97-7937-01 6 43171718 43171718 C T CUL9 Silent p.T1384T 0.07 TCGA-97-7937-01 6 4735027 4735027 C A CDYL Missense_Mutation p.S45R 0.27 tolerated_low_confidence(0.17) benign(0) TCGA-97-7937-01 6 47682410 47682410 A C GPR115 Missense_Mutation p.T477P 0.25 deleterious(0) probably_damaging(1) TCGA-97-7937-01 6 51909840 51909840 C A PKHD1 Missense_Mutation p.R880L 0.27 deleterious(0) probably_damaging(0.998) TCGA-97-7937-01 6 7327023 7327023 G T CAGE1 3'UTR 0.19 TCGA-97-7937-01 6 84798821 84798821 C A MRAP2 Missense_Mutation p.S80Y 0.30 tolerated(0.36) possibly_damaging(0.804) TCGA-97-7937-01 6 87968174 87968175 AA - ZNF292 Frame_Shift_Del p.I1609Mfs*13 0.17 TCGA-97-7937-01 6 97052641 97052641 G T FHL5 Missense_Mutation p.D59Y 0.27 deleterious(0) possibly_damaging(0.748) TCGA-97-7937-01 6 97729166 97729166 C G MMS22L Missense_Mutation p.W79C 0.32 deleterious(0) probably_damaging(0.998) TCGA-97-7937-01 7 100685958 100685958 T A MUC17 Missense_Mutation p.L3754H 0.37 benign(0.122) TCGA-97-7937-01 7 100731715 100731715 G T TRIM56 Missense_Mutation p.Q374H 0.29 deleterious_low_confidence(0.04) benign(0.002) TCGA-97-7937-01 7 100773858 100773858 C A SERPINE1 Missense_Mutation p.T143K 0.31 tolerated(0.89) benign(0.118) TCGA-97-7937-01 7 103216019 103216019 A T RELN Missense_Mutation p.C1427S 0.34 deleterious(0) benign(0.136) TCGA-97-7937-01 7 110526703 110526703 G C IMMP2L Missense_Mutation p.I118M 0.15 tolerated(0.12) benign(0.001) TCGA-97-7937-01 7 113519437 113519437 G C PPP1R3A Silent p.T570T 0.22 TCGA-97-7937-01 7 113558931 113558931 G T PPP1R3A Missense_Mutation p.P41T 0.33 deleterious(0) probably_damaging(0.97) TCGA-97-7937-01 7 115596827 115596827 A T TFEC Missense_Mutation p.D96E 0.25 tolerated(0.05) possibly_damaging(0.562) TCGA-97-7937-01 7 116371799 116371799 C T MET Silent p.R426R 0.16 TCGA-97-7937-01 7 121650942 121650942 A T PTPRZ1 Silent p.P614P 0.41 TCGA-97-7937-01 7 122787356 122787356 G T SLC13A1 Silent p.G223G 0.25 TCGA-97-7937-01 7 126173364 126173364 C A GRM8 Missense_Mutation p.S691I 0.45 deleterious(0) probably_damaging(0.999) TCGA-97-7937-01 7 126173365 126173365 T A GRM8 Missense_Mutation p.S691C 0.46 deleterious(0) probably_damaging(0.999) TCGA-97-7937-01 7 127894638 127894638 A T LEP Missense_Mutation p.H109L 0.30 tolerated(0.06) benign(0.268) TCGA-97-7937-01 7 132192822 132192822 C T PLXNA4 Missense_Mutation p.D211N 0.23 tolerated(0.48) benign(0.229) TCGA-97-7937-01 7 132192823 132192823 C A PLXNA4 Silent p.A210A 0.24 TCGA-97-7937-01 7 134260294 134260294 G T AKR1B15 Missense_Mutation p.Q212H 0.27 deleterious(0) probably_damaging(0.999) TCGA-97-7937-01 7 134552502 134552502 T A CALD1 Silent p.R6R 0.45 TCGA-97-7937-01 7 136700283 136700283 C A CHRM2 Missense_Mutation p.P224H 0.19 tolerated(0.12) possibly_damaging(0.617) TCGA-97-7937-01 7 138406718 138406718 C A ATP6V0A4 Missense_Mutation p.S688I 0.33 tolerated(0.19) benign(0.004) TCGA-97-7937-01 7 143000939 143000939 G T CASP2 Nonsense_Mutation p.E344* 0.14 TCGA-97-7937-01 7 149499006 149499006 G T SSPO RNA 0.09 TCGA-97-7937-01 7 150034263 150034263 G A LRRC61 Missense_Mutation p.A105T 0.11 deleterious(0) benign(0.423) TCGA-97-7937-01 7 150324908 150324908 C A GIMAP6 Nonsense_Mutation p.E260* 0.49 TCGA-97-7937-01 7 150773337 150773337 C A SLC4A2 Intron 0.07 TCGA-97-7937-01 7 15725928 15725928 C A MEOX2 Missense_Mutation p.D34Y 0.37 deleterious(0) possibly_damaging(0.84) TCGA-97-7937-01 7 21906152 21906152 G C DNAH11 Missense_Mutation p.W3861S 0.07 probably_damaging(0.96) TCGA-97-7937-01 7 27168817 27168817 T C HOXA4 3'UTR 0.10 TCGA-97-7937-01 7 34724296 34724296 G - NPSR1 Frame_Shift_Del 0.16 TCGA-97-7937-01 7 35288451 35288451 C A TBX20 Missense_Mutation p.R128M 0.32 deleterious(0) probably_damaging(0.937) TCGA-97-7937-01 7 38295957 38295957 C A TRGJP2 Missense_Mutation p.R14S 0.34 unknown(0) TCGA-97-7937-01 7 38835164 38835164 C A VPS41 Silent p.V206V 0.32 TCGA-97-7937-01 7 4089086 4089086 G T SDK1 Missense_Mutation p.Q903H 0.31 deleterious(0) probably_damaging(0.997) TCGA-97-7937-01 7 48319189 48319189 G A ABCA13 Missense_Mutation p.D2800N 0.21 benign(0.001) TCGA-97-7937-01 7 51095726 51095726 G A COBL Missense_Mutation p.P1023S 0.28 tolerated(0.41) benign(0.008) TCGA-97-7937-01 7 57193821 57193821 C A ZNF479 Splice_Site p.X56_splice 0.31 TCGA-97-7937-01 7 57528925 57528925 C A ZNF716 Missense_Mutation p.S253Y 0.14 tolerated(0.25) probably_damaging(0.911) TCGA-97-7937-01 7 63726427 63726427 G T ZNF679 Missense_Mutation p.G139V 0.20 tolerated(0.14) possibly_damaging(0.771) TCGA-97-7937-01 7 66098317 66098317 C A KCTD7 Missense_Mutation p.S67Y 0.22 deleterious(0) probably_damaging(0.986) TCGA-97-7937-01 7 70885934 70885934 C A WBSCR17 Missense_Mutation p.R269S 0.44 tolerated(0.17) probably_damaging(0.995) TCGA-97-7937-01 7 71488689 71488689 C A CALN1 Missense_Mutation p.G152C 0.34 tolerated(0.14) possibly_damaging(0.875) TCGA-97-7937-01 7 73811523 73811523 A C CLIP2 Missense_Mutation p.K947T 0.17 deleterious(0.01) possibly_damaging(0.597) TCGA-97-7937-01 7 81611924 81611924 T A CACNA2D1 Silent p.P638P 0.38 TCGA-97-7937-01 7 89917641 89917641 C A C7orf63 Missense_Mutation p.L584I 0.16 tolerated(0.07) possibly_damaging(0.471) TCGA-97-7937-01 7 92027594 92027594 T C ANKIB1 Silent p.S867S 0.42 TCGA-97-7937-01 7 92821574 92821574 G T HEPACAM2 Missense_Mutation p.H460N 0.40 tolerated_low_confidence(0.23) benign(0.001) TCGA-97-7937-01 7 931930 931933 AAAC - GET4 Frame_Shift_Del p.N208Kfs*44 0.24 TCGA-97-7937-01 7 99022666 99022666 C A ATP5J2-PTCD1 Missense_Mutation p.V546L 0.41 tolerated(0.1) benign(0.166) TCGA-97-7937-01 8 103297392 103297392 G A UBR5 Nonsense_Mutation p.R1887* 0.09 TCGA-97-7937-01 8 103572795 103572795 G T ODF1 Nonsense_Mutation p.G146* 0.38 TCGA-97-7937-01 8 10466664 10466664 G T RP1L1 Silent p.G1648G 0.35 TCGA-97-7937-01 8 105459732 105459732 C A DPYS Splice_Site p.X142_splice 0.32 TCGA-97-7937-01 8 108970395 108970395 C G RSPO2 Missense_Mutation p.V177L 0.34 tolerated(0.81) benign(0.355) TCGA-97-7937-01 8 113694857 113694857 G T CSMD3 Missense_Mutation p.H831N 0.31 deleterious(0.02) possibly_damaging(0.871) TCGA-97-7937-01 8 117874087 117874087 C A RAD21 Missense_Mutation p.D123Y 0.41 deleterious(0) probably_damaging(0.989) TCGA-97-7937-01 8 118817013 118817013 G A EXT1 Missense_Mutation p.P668L 0.09 deleterious(0) probably_damaging(1) TCGA-97-7937-01 8 121381709 121381709 G C COL14A1 Missense_Mutation p.A1766P 0.47 deleterious(0.01) benign(0.247) TCGA-97-7937-01 8 124361527 124361527 C G ATAD2 Missense_Mutation p.E602Q 0.15 deleterious(0.04) benign(0.027) TCGA-97-7937-01 8 133740100 133740100 A G TMEM71 Missense_Mutation p.L188P 0.33 tolerated(0.31) benign(0.002) TCGA-97-7937-01 8 139749792 139749792 C - COL22A1 Frame_Shift_Del p.G705Efs*110 0.24 TCGA-97-7937-01 8 140630539 140630539 C T KCNK9 Missense_Mutation p.D363N 0.17 tolerated(0.36) benign(0.372) TCGA-97-7937-01 8 143961219 143961219 C A CYP11B1 Missense_Mutation p.R4M 0.37 deleterious(0) possibly_damaging(0.886) TCGA-97-7937-01 8 17581246 17581246 C T MTUS1 Missense_Mutation p.R795Q 0.17 tolerated(0.27) benign(0.016) TCGA-97-7937-01 8 22137081 22137081 G - PIWIL2 Frame_Shift_Del p.P63Qfs*26 0.09 TCGA-97-7937-01 8 22926487 22926487 T C TNFRSF10B 5'UTR 0.30 TCGA-97-7937-01 8 27288539 27288539 G T PTK2B Intron 0.20 TCGA-97-7937-01 8 35544126 35544126 G T UNC5D Missense_Mutation p.R328L 0.13 deleterious(0.01) probably_damaging(0.99) TCGA-97-7937-01 8 35544127 35544127 G T UNC5D Silent p.R328R 0.14 TCGA-97-7937-01 8 36793211 36793211 C G KCNU1 Missense_Mutation p.P1075A 0.21 tolerated(0.08) benign(0.014) TCGA-97-7937-01 8 42587132 42587132 G T CHRNB3 Missense_Mutation p.V228F 0.57 deleterious(0.02) probably_damaging(0.984) TCGA-97-7937-01 8 59764193 59764193 T C TOX Missense_Mutation p.M195V 0.21 tolerated(0.65) benign(0) TCGA-97-7937-01 8 67066507 67066507 G T TRIM55 Missense_Mutation p.A488S 0.38 tolerated_low_confidence(0.21) benign(0.027) TCGA-97-7937-01 8 68049813 68049813 C G CSPP1 Silent p.L645L 0.26 TCGA-97-7937-01 8 72971673 72971673 T A TRPA1 Missense_Mutation p.R315S 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-97-7937-01 8 86025304 86025304 G A LRRCC1 Missense_Mutation p.G172R 0.45 deleterious(0) possibly_damaging(0.707) TCGA-97-7937-01 8 87641256 87641256 G T CNGB3 Silent p.A457A 0.16 TCGA-97-7937-01 8 91081419 91081419 C T CALB1 Missense_Mutation p.R93Q 0.16 deleterious(0.05) possibly_damaging(0.63) TCGA-97-7937-01 9 100092615 100092615 A T CCDC180 Nonsense_Mutation p.K658* 0.26 TCGA-97-7937-01 9 104357194 104357194 C T PPP3R2 Missense_Mutation p.E7K 0.31 deleterious(0.03) benign(0.032) TCGA-97-7937-01 9 107266778 107266778 T C OR13F1 Missense_Mutation p.S79P 0.18 tolerated(1) benign(0) TCGA-97-7937-01 9 113173805 113173805 A T SVEP1 Missense_Mutation p.N2062K 0.31 probably_damaging(0.955) TCGA-97-7937-01 9 114989795 114989795 A C PTBP3 Silent p.T454T 0.14 TCGA-97-7937-01 9 117553073 117553073 G A TNFSF15 Silent p.L139L 0.39 TCGA-97-7937-01 9 119737613 119737613 C A ASTN2 Missense_Mutation p.S537I 0.44 deleterious(0) unknown(0) TCGA-97-7937-01 9 125552027 125552027 G A OR5C1 Silent p.L272L 0.25 TCGA-97-7937-01 9 135926348 135926348 G T GTF3C5 Nonsense_Mutation p.E251* 0.21 TCGA-97-7937-01 9 136291323 136291323 G A ADAMTS13 Missense_Mutation p.D182N 0.32 deleterious(0) probably_damaging(1) TCGA-97-7937-01 9 137645731 137645731 G T COL5A1 Silent p.P585P 0.32 TCGA-97-7937-01 9 138416989 138416989 C A LCN1 Missense_Mutation p.P173T 0.28 tolerated(0.1) possibly_damaging(0.623) TCGA-97-7937-01 9 138516186 138516186 G T GLT6D1 Silent p.A196A 0.36 TCGA-97-7937-01 9 139990728 139990728 C A MAN1B1 Missense_Mutation p.Q169K 0.28 tolerated(0.16) benign(0.284) TCGA-97-7937-01 9 140040201 140040201 C A GRIN1 Silent p.R139R 0.17 TCGA-97-7937-01 9 17484328 17484328 G A CNTLN Silent p.V1297V 0.42 TCGA-97-7937-01 9 18504846 18504846 C G ADAMTSL1 Missense_Mutation p.S28C 0.33 deleterious(0) probably_damaging(0.999) TCGA-97-7937-01 9 19576964 19576964 C A SLC24A2 Missense_Mutation p.V396L 0.29 tolerated(0.54) benign(0.001) TCGA-97-7937-01 9 26961955 26961955 G T IFT74 5'UTR 0.20 TCGA-97-7937-01 9 27202926 27202926 G A TEK Missense_Mutation p.R673H 0.11 tolerated(0.08) probably_damaging(0.967) TCGA-97-7937-01 9 27949151 27949151 G T LINGO2 Missense_Mutation p.R507S 0.33 tolerated(0.75) benign(0.091) TCGA-97-7937-01 9 32631704 32631704 T C TAF1L Missense_Mutation p.M1292V 0.33 deleterious(0.01) possibly_damaging(0.636) TCGA-97-7937-01 9 35106295 35106295 A C FAM214B Missense_Mutation p.V391G 0.14 deleterious(0) probably_damaging(0.998) TCGA-97-7937-01 9 36217419 36217419 G A GNE Silent p.P735P 0.21 TCGA-97-7937-01 9 8486072 8486072 T A PTPRD Missense_Mutation p.E915D 0.14 tolerated(0.07) probably_damaging(0.952) TCGA-97-7937-01 9 8517893 8517893 C A PTPRD Missense_Mutation p.D500Y 0.30 deleterious(0.01) probably_damaging(1) TCGA-97-7937-01 9 90535546 90535546 C A SPATA31C1 RNA 0.26 TCGA-97-7937-01 9 95872911 95872911 G T C9orf89 Missense_Mutation p.R71L 0.22 deleterious(0.04) possibly_damaging(0.464) TCGA-97-7937-01 9 98241428 98241428 C A PTCH1 Missense_Mutation p.A357S 0.17 deleterious(0) probably_damaging(0.993) TCGA-97-7937-01 9 98669551 98669551 C T ERCC6L2 Silent p.N273N 0.32 TCGA-97-7937-01 9 990852 990852 G A DMRT3 Silent p.S422S 0.14 TCGA-97-7937-01 X 106144008 106144008 C A RIPPLY1 Nonsense_Mutation p.E143* 0.14 TCGA-97-7937-01 X 107977851 107977851 C - IRS4 Frame_Shift_Del p.G575Dfs*36 0.35 TCGA-97-7937-01 X 132887815 132887815 T C GPC3 Silent p.T242T 0.82 TCGA-97-7937-01 X 139038483 139038483 G T CXorf66 Missense_Mutation p.H220N 0.73 tolerated(0.38) possibly_damaging(0.607) TCGA-97-7937-01 X 152225685 152225685 G T PNMA3 Silent p.V91V 0.75 TCGA-97-7937-01 X 152807167 152807167 G T ATP2B3 Missense_Mutation p.E149D 0.74 tolerated(0.13) benign(0.023) TCGA-97-7937-01 X 26157186 26157186 G T MAGEB18 Silent p.T28T 0.64 TCGA-97-7937-01 X 32466621 32466621 G C DMD Missense_Mutation p.N1246K 0.55 benign(0.047) TCGA-97-7937-01 X 48336506 48336506 G T FTSJ1 Missense_Mutation p.R24L 0.60 deleterious(0) probably_damaging(1) TCGA-97-7937-01 X 54978518 54978518 G T PFKFB1 Missense_Mutation p.D222E 0.53 benign(0.014) TCGA-97-7937-01 X 69421846 69421846 C A DGAT2L6 Nonsense_Mutation p.C193* 0.31 TCGA-97-7937-01 X 69811632 69811632 G T TEX11 Nonsense_Mutation p.C718* 0.62 TCGA-97-7937-01 X 70148048 70148048 C A SLC7A3 Missense_Mutation p.G256V 0.64 deleterious(0) probably_damaging(1) TCGA-97-7937-01 X 73960667 73960667 C A KIAA2022 Missense_Mutation p.G1242V 0.33 deleterious(0.02) benign(0.288) TCGA-97-7937-01 X 84329295 84329295 G T APOOL Nonsense_Mutation p.E206* 0.73 TCGA-97-7937-01 X 84523327 84523327 A G ZNF711 Missense_Mutation p.Y315C 0.22 tolerated(0.06) probably_damaging(0.95) TCGA-97-7937-01 X 84634178 84634178 C A POF1B Missense_Mutation p.Q94H 0.91 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-97-7937-01 X 86887407 86887407 C G KLHL4 Missense_Mutation p.P508A 0.68 deleterious(0.02) probably_damaging(0.999) TCGA-97-7937-01 Y 21883061 21883061 C A KDM5D Missense_Mutation p.W503L 0.58 deleterious(0) probably_damaging(0.998) TCGA-97-7938-01 10 102753033 102753033 G C C10orf2 Missense_Mutation p.K607N 0.06 deleterious(0) probably_damaging(1) TCGA-97-7938-01 10 103907013 103907013 C T PPRC1 Missense_Mutation p.R1422C 0.36 deleterious_low_confidence(0.02) benign(0) TCGA-97-7938-01 10 104594607 104594607 A G CYP17A1 Missense_Mutation p.Y201H 0.26 deleterious(0) probably_damaging(0.958) TCGA-97-7938-01 10 105921783 105921783 A T WDR96 Missense_Mutation p.L1117H 0.29 tolerated(0.22) benign(0.005) TCGA-97-7938-01 10 11504481 11504481 T G USP6NL Missense_Mutation p.N833H 0.37 tolerated_low_confidence(0.17) benign(0.105) TCGA-97-7938-01 10 12143171 12143171 G T DHTKD1 Silent p.G629G 0.40 TCGA-97-7938-01 10 23408279 23408279 G T MSRB2 Nonsense_Mutation p.E115* 0.27 TCGA-97-7938-01 10 27303608 27303608 C G ANKRD26 Missense_Mutation p.Q1513H 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-97-7938-01 10 30316484 30316484 C G KIAA1462 Missense_Mutation p.E865Q 0.07 tolerated(0.28) possibly_damaging(0.447) TCGA-97-7938-01 10 3141545 3141545 G T PFKP Splice_Site p.X88_splice 0.23 TCGA-97-7938-01 10 43089490 43089490 C A ZNF33B Missense_Mutation p.C303F 0.26 tolerated(0.18) benign(0.086) TCGA-97-7938-01 10 55568867 55568867 G T PCDH15 Missense_Mutation p.T582K 0.28 deleterious_low_confidence(0) unknown(0) TCGA-97-7938-01 10 61112086 61112086 T C FAM13C Missense_Mutation p.R90G 0.23 deleterious_low_confidence(0) benign(0.341) TCGA-97-7938-01 10 70646248 70646248 A T STOX1 Missense_Mutation p.Q899L 0.27 deleterious(0.03) benign(0.347) TCGA-97-7938-01 10 72468463 72468463 G T ADAMTS14 Missense_Mutation p.V267L 0.20 deleterious(0.01) probably_damaging(0.912) TCGA-97-7938-01 10 75296160 75296160 G A USP54 Silent p.C337C 0.20 TCGA-97-7938-01 10 93866 93866 G T TUBB8 Silent p.R156R 0.33 TCGA-97-7938-01 10 98127779 98127779 T C TLL2 3'UTR 0.47 TCGA-97-7938-01 11 102221329 102221329 A G BIRC2 Silent p.P248P 0.21 TCGA-97-7938-01 11 110035499 110035499 G A ZC3H12C Missense_Mutation p.M563I 0.30 tolerated(0.15) benign(0) TCGA-97-7938-01 11 113078567 113078567 G A NCAM1 Silent p.Q312Q 0.38 TCGA-97-7938-01 11 118898449 118898449 G C SLC37A4 Missense_Mutation p.S172C 0.20 tolerated(0.05) possibly_damaging(0.819) TCGA-97-7938-01 11 119998221 119998221 C A TRIM29 Silent p.R319R 0.20 TCGA-97-7938-01 11 126278003 126278003 C - ST3GAL4 Frame_Shift_Del p.R118Afs*30 0.16 TCGA-97-7938-01 11 18740270 18740270 G T IGSF22 Silent p.I234I 0.27 TCGA-97-7938-01 11 3681265 3681265 C A ART1 Silent p.P172P 0.36 TCGA-97-7938-01 11 433355 433355 G T ANO9 Missense_Mutation p.H103Q 0.38 tolerated(0.31) benign(0.004) TCGA-97-7938-01 11 4389414 4389414 C T OR52B4 Missense_Mutation p.V38I 0.29 tolerated(0.94) benign(0.008) TCGA-97-7938-01 11 4870090 4870090 C T OR51S1 Missense_Mutation p.V117I 0.30 tolerated(0.75) benign(0.09) TCGA-97-7938-01 11 4935983 4935983 A T OR51G2 Missense_Mutation p.I304N 0.22 deleterious(0) probably_damaging(0.998) TCGA-97-7938-01 11 5173074 5173074 C T OR52A1 Missense_Mutation p.V176I 0.30 tolerated(0.82) benign(0.019) TCGA-97-7938-01 11 55587463 55587463 G A OR5D18 Missense_Mutation p.A120T 0.23 deleterious(0) probably_damaging(0.957) TCGA-97-7938-01 11 55594811 55594811 G T OR5L2 Missense_Mutation p.L39F 0.05 deleterious(0.03) benign(0.001) TCGA-97-7938-01 11 55659177 55659177 G T TRIM51 3'UTR 0.24 TCGA-97-7938-01 11 55999732 55999732 G T OR5T2 Missense_Mutation p.D310E 0.22 deleterious(0.03) possibly_damaging(0.764) TCGA-97-7938-01 11 56344661 56344661 G A OR5M10 Silent p.C179C 0.39 TCGA-97-7938-01 11 58034615 58034615 A G OR10W1 Missense_Mutation p.V239A 0.29 deleterious(0) probably_damaging(0.999) TCGA-97-7938-01 11 60184092 60184092 C A MS4A14 Missense_Mutation p.Q584K 0.23 tolerated(0.18) benign(0.194) TCGA-97-7938-01 11 61675769 61675769 C A RAB3IL1 Missense_Mutation p.Q7H 0.24 tolerated_low_confidence(0.56) benign(0) TCGA-97-7938-01 11 73625495 73625495 C G PAAF1 Silent p.L255L 0.10 TCGA-97-7938-01 11 75115797 75115797 A G RPS3 Missense_Mutation p.H223R 0.41 tolerated(0.36) benign(0.008) TCGA-97-7938-01 11 85396231 85396231 C G CCDC89 Missense_Mutation p.E315Q 0.37 tolerated(0.24) benign(0.196) TCGA-97-7938-01 11 85967511 85967511 G T EED Missense_Mutation p.G170V 0.29 deleterious(0) probably_damaging(1) TCGA-97-7938-01 12 108686252 108686252 A T CMKLR1 Missense_Mutation p.I163N 0.24 deleterious(0) possibly_damaging(0.786) TCGA-97-7938-01 12 111748436 111748436 C T CUX2 Missense_Mutation p.S617L 0.18 deleterious(0) probably_damaging(0.99) TCGA-97-7938-01 12 114841655 114841655 G T TBX5 Missense_Mutation p.P17T 0.25 tolerated(0.23) benign(0.036) TCGA-97-7938-01 12 116534519 116534519 C A MED13L Missense_Mutation p.W145L 0.24 deleterious(0.02) unknown(0) TCGA-97-7938-01 12 118575880 118575880 C G PEBP1 Missense_Mutation p.L58V 0.09 tolerated(0.36) benign(0.003) TCGA-97-7938-01 12 118610414 118610414 A G TAOK3 Missense_Mutation p.S583P 0.24 tolerated(0.23) benign(0.231) TCGA-97-7938-01 12 123780484 123780484 G A SBNO1 Nonsense_Mutation p.Q1385* 0.11 TCGA-97-7938-01 12 132325149 132325149 G T MMP17 Missense_Mutation p.G152W 0.31 deleterious(0) probably_damaging(1) TCGA-97-7938-01 12 14610230 14610230 G T ATF7IP Splice_Site p.X720_splice 0.18 TCGA-97-7938-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.53 deleterious(0.04) probably_damaging(0.993) TCGA-97-7938-01 12 34179612 34179612 G T ALG10 Missense_Mutation p.W395L 0.25 deleterious(0.03) possibly_damaging(0.859) TCGA-97-7938-01 12 49447314 49447314 C A KMT2D Missense_Mutation p.A262S 0.36 unknown(0) TCGA-97-7938-01 12 55523560 55523560 G T OR9K2 Missense_Mutation p.G3V 0.19 tolerated_low_confidence(0.09) benign(0.017) TCGA-97-7938-01 12 57351253 57351253 G A RDH16 5'UTR 0.29 TCGA-97-7938-01 12 62148676 62148676 C A FAM19A2 Missense_Mutation p.R79L 0.16 deleterious(0) possibly_damaging(0.496) TCGA-97-7938-01 12 64849639 64849639 G T TBK1 5'UTR 0.42 TCGA-97-7938-01 12 81741445 81741445 G T PPFIA2 Missense_Mutation p.P700Q 0.23 tolerated(0.3) benign(0.003) TCGA-97-7938-01 12 91348430 91348430 G C CCER1 Silent p.A30A 0.31 TCGA-97-7938-01 12 91502420 91502420 A T LUM Missense_Mutation p.S113T 0.24 tolerated(0.15) possibly_damaging(0.515) TCGA-97-7938-01 13 21729278 21729278 C A SKA3 3'UTR 0.17 TCGA-97-7938-01 13 42295619 42295619 T C VWA8 Missense_Mutation p.I951V 0.39 tolerated(0.62) benign(0.002) TCGA-97-7938-01 13 42742644 42742644 G T DGKH Missense_Mutation p.W396L 0.36 deleterious(0) probably_damaging(0.995) TCGA-97-7938-01 13 46288187 46288187 G A SPERT Missense_Mutation p.A343T 0.33 tolerated(0.42) benign(0.01) TCGA-97-7938-01 13 50276609 50276609 C T KPNA3 Silent p.E460E 0.24 TCGA-97-7938-01 13 52598430 52598431 - G ALG11 Frame_Shift_Ins p.C191Lfs*28 0.25 TCGA-97-7938-01 13 53039580 53039580 G A CKAP2 Missense_Mutation p.A487T 0.21 deleterious(0) probably_damaging(0.984) TCGA-97-7938-01 13 79175537 79175537 C A POU4F1 3'UTR 0.18 TCGA-97-7938-01 14 101439019 101439019 G C SNORD114-15 RNA 0.23 TCGA-97-7938-01 14 21058461 21058461 C G RNASE12 Missense_Mutation p.S141T 0.47 tolerated(0.19) benign(0.001) TCGA-97-7938-01 14 24538031 24538031 C A LRRC16B Missense_Mutation p.P1280T 0.45 deleterious_low_confidence(0.01) unknown(0) TCGA-97-7938-01 14 30047522 30047522 G A PRKD1 Missense_Mutation p.R827C 0.35 deleterious(0) probably_damaging(1) TCGA-97-7938-01 14 51226934 51226934 C G NIN Missense_Mutation p.Q680H 0.36 deleterious(0) possibly_damaging(0.888) TCGA-97-7938-01 14 56585389 56585389 C G PELI2 Missense_Mutation p.P4R 0.38 deleterious_low_confidence(0.02) possibly_damaging(0.58) TCGA-97-7938-01 14 58471367 58471367 G T C14orf37 3'UTR 0.27 TCGA-97-7938-01 14 64675542 64675542 C G SYNE2 Missense_Mutation p.L6090V 0.37 probably_damaging(0.999) TCGA-97-7938-01 14 76906004 76906004 G T ESRRB Missense_Mutation p.C103F 0.23 deleterious(0) probably_damaging(0.996) TCGA-97-7938-01 14 77242564 77242564 G A VASH1 Missense_Mutation p.R287H 0.12 tolerated(0.1) possibly_damaging(0.481) TCGA-97-7938-01 14 77772688 77772688 T A POMT2 Missense_Mutation p.M144L 0.20 deleterious(0) probably_damaging(0.999) TCGA-97-7938-01 14 91196419 91196419 C A TTC7B Missense_Mutation p.G233V 0.40 deleterious(0) probably_damaging(1) TCGA-97-7938-01 14 91196420 91196420 C A TTC7B Missense_Mutation p.G233W 0.39 deleterious(0) probably_damaging(1) TCGA-97-7938-01 14 94079174 94079175 - A UNC79 Frame_Shift_Ins p.D1087Gfs*29 0.15 TCGA-97-7938-01 14 99642443 99642443 G T BCL11B Missense_Mutation p.H244N 0.16 deleterious(0) probably_damaging(0.999) TCGA-97-7938-01 15 102291827 102291827 G T DNM1P47 RNA 0.22 TCGA-97-7938-01 15 22969346 22969346 A T CYFIP1 Missense_Mutation p.N858Y 0.30 deleterious(0) probably_damaging(1) TCGA-97-7938-01 15 25446394 25446394 A G SNORD115-19 5'Flank 0.06 TCGA-97-7938-01 15 37187382 37187382 C A MEIS2 Missense_Mutation p.G373C 0.25 deleterious(0) probably_damaging(0.971) TCGA-97-7938-01 15 42676714 42676714 G T CAPN3 Nonsense_Mutation p.G115* 0.27 TCGA-97-7938-01 15 63353426 63353426 G A TPM1 Missense_Mutation p.R198K 0.13 tolerated(1) benign(0.003) TCGA-97-7938-01 15 63414099 63414099 C T LACTB Missense_Mutation p.A10V 0.29 tolerated_low_confidence(0.71) benign(0.003) TCGA-97-7938-01 15 65357604 65357604 G A RASL12 Silent p.T37T 0.15 TCGA-97-7938-01 15 65899529 65899529 C T VWA9 Intron 0.26 TCGA-97-7938-01 15 78921882 78921882 G T CHRNB4 Nonsense_Mutation p.Y255* 0.21 TCGA-97-7938-01 15 83926689 83926689 C A BNC1 Silent p.L830L 0.23 TCGA-97-7938-01 15 97326820 97326820 G T SPATA8 5'UTR 0.35 TCGA-97-7938-01 16 10274009 10274009 C A GRIN2A Missense_Mutation p.C87F 0.27 deleterious(0) probably_damaging(1) TCGA-97-7938-01 16 15850236 15850236 C A MYH11 Missense_Mutation p.D578Y 0.23 probably_damaging(0.992) TCGA-97-7938-01 16 15850237 15850237 C A MYH11 Missense_Mutation p.K577N 0.22 probably_damaging(0.999) TCGA-97-7938-01 16 18849510 18849510 C A SMG1 Silent p.L2413L 0.24 TCGA-97-7938-01 16 19056725 19056725 C G TMC7 Missense_Mutation p.I506M 0.13 tolerated(0.07) possibly_damaging(0.61) TCGA-97-7938-01 16 20327339 20327339 G C GP2 Silent p.R483R 0.28 TCGA-97-7938-01 16 20494388 20494388 G A ACSM2A Silent p.K506K 0.30 TCGA-97-7938-01 16 2256185 2256185 C T MLST8 Silent p.I33I 0.31 TCGA-97-7938-01 16 27473778 27473778 C A GTF3C1 Missense_Mutation p.R1985L 0.17 deleterious(0) probably_damaging(0.999) TCGA-97-7938-01 16 30081430 30081430 C T ALDOA Intron 0.28 TCGA-97-7938-01 16 30129733 30129733 G A MAPK3 Silent p.A160A 0.04 TCGA-97-7938-01 16 30528393 30528393 T A ITGAL Missense_Mutation p.W988R 0.28 tolerated(0.26) possibly_damaging(0.648) TCGA-97-7938-01 16 4934221 4934221 C T PPL Missense_Mutation p.E1479K 0.06 tolerated(0.05) probably_damaging(0.999) TCGA-97-7938-01 16 4935596 4935596 C A PPL Silent p.L1020L 0.29 TCGA-97-7938-01 16 49670231 49670231 C A ZNF423 Silent p.G944G 0.31 TCGA-97-7938-01 16 50339437 50339437 C T ADCY7 Missense_Mutation p.S540L 0.09 tolerated(0.69) benign(0.007) TCGA-97-7938-01 16 53878094 53878094 C G FTO Missense_Mutation p.S260C 0.09 tolerated(0.05) possibly_damaging(0.7) TCGA-97-7938-01 16 640413 640413 C T RAB40C Missense_Mutation p.S41F 0.15 deleterious(0) possibly_damaging(0.483) TCGA-97-7938-01 16 71007821 71007821 C A HYDIN Nonsense_Mutation p.G1714* 0.24 TCGA-97-7938-01 16 71098635 71098635 G A HYDIN Silent p.L728L 0.23 TCGA-97-7938-01 16 71417284 71417284 C A CALB2 Missense_Mutation p.D138E 0.18 tolerated(0.08) possibly_damaging(0.601) TCGA-97-7938-01 16 77325218 77325218 G T ADAMTS18 Missense_Mutation p.P1116Q 0.28 deleterious(0.04) possibly_damaging(0.497) TCGA-97-7938-01 16 849032 849032 G T GNG13 Missense_Mutation p.L16I 0.28 deleterious(0.01) probably_damaging(0.973) TCGA-97-7938-01 16 849033 849033 G T GNG13 Missense_Mutation p.S15R 0.26 deleterious(0) probably_damaging(0.985) TCGA-97-7938-01 16 88723851 88723851 G A MVD Silent p.A132A 0.41 TCGA-97-7938-01 17 11881681 11881681 T A ZNF18 Nonsense_Mutation p.K415* 0.43 TCGA-97-7938-01 17 18219588 18219588 A - SMCR8 Frame_Shift_Del p.Q162Rfs*22 0.31 TCGA-97-7938-01 17 30228589 30228589 C A UTP6 Nonsense_Mutation p.E20* 0.27 TCGA-97-7938-01 17 33353469 33353469 C A RFFL Missense_Mutation p.S35I 0.21 deleterious(0) probably_damaging(0.961) TCGA-97-7938-01 17 34191520 34191520 T G C17orf66 Missense_Mutation p.E164A 0.05 deleterious(0.01) possibly_damaging(0.884) TCGA-97-7938-01 17 37922523 37922523 C G IKZF3 Missense_Mutation p.E350D 0.12 tolerated(0.39) benign(0.012) TCGA-97-7938-01 17 55027858 55027858 C A COIL Nonsense_Mutation p.E249* 0.28 TCGA-97-7938-01 17 64216808 64216808 A T APOH Nonsense_Mutation p.Y156* 0.24 TCGA-97-7938-01 17 7579310 7579310 A T TP53 Splice_Site p.X125_splice 0.09 TCGA-97-7938-01 17 7984442 7984442 G T ALOX12B Missense_Mutation p.A139D 0.39 deleterious(0.05) possibly_damaging(0.478) TCGA-97-7938-01 18 11852027 11852027 A G CHMP1B Missense_Mutation p.T173A 0.21 tolerated(0.59) benign(0.008) TCGA-97-7938-01 18 14183682 14183682 C G ANKRD20A5P RNA 0.05 TCGA-97-7938-01 18 19353597 19353597 C T MIB1 Nonsense_Mutation p.Q182* 0.25 TCGA-97-7938-01 18 21508596 21508596 G T LAMA3 Missense_Mutation p.R2768L 0.22 possibly_damaging(0.828) TCGA-97-7938-01 18 21914211 21914211 G C OSBPL1A Missense_Mutation p.L160V 0.15 deleterious(0) possibly_damaging(0.803) TCGA-97-7938-01 18 28648025 28648025 C A DSC2 Nonsense_Mutation p.E888* 0.25 TCGA-97-7938-01 18 31323412 31323412 G C ASXL3 Silent p.V1200V 0.30 TCGA-97-7938-01 18 40857296 40857296 G C SYT4 5'UTR 0.30 TCGA-97-7938-01 18 43249312 43249312 G T SLC14A2 Missense_Mutation p.W693L 0.28 deleterious(0) probably_damaging(0.999) TCGA-97-7938-01 18 56203726 56203726 C A ALPK2 Missense_Mutation p.E1231D 0.21 tolerated(0.13) benign(0.02) TCGA-97-7938-01 18 63527057 63527057 C G CDH7 Missense_Mutation p.N536K 0.14 deleterious(0.01) probably_damaging(1) TCGA-97-7938-01 18 6980545 6980545 G T LAMA1 Silent p.L1994L 0.23 TCGA-97-7938-01 18 72775126 72775126 G A ZNF407 Missense_Mutation p.E1817K 0.24 deleterious(0) probably_damaging(0.994) TCGA-97-7938-01 19 1235049 1235049 C A C19orf26 Nonsense_Mutation p.E136* 0.25 TCGA-97-7938-01 19 15990587 15990587 C A CYP4F2 Silent p.R412R 0.25 TCGA-97-7938-01 19 16874726 16874726 C A NWD1 Missense_Mutation p.R741S 0.21 tolerated(0.08) benign(0.387) TCGA-97-7938-01 19 2252613 2252613 C G JSRP1 Missense_Mutation p.E237D 0.15 deleterious(0.05) possibly_damaging(0.801) TCGA-97-7938-01 19 22939348 22939348 C T ZNF99 3'Flank 0.39 TCGA-97-7938-01 19 30935800 30935800 C A ZNF536 Missense_Mutation p.A444D 0.31 tolerated(0.56) benign(0.093) TCGA-97-7938-01 19 34003636 34003636 G T PEPD Missense_Mutation p.L22I 0.25 deleterious(0) probably_damaging(0.941) TCGA-97-7938-01 19 34302445 34302445 C G KCTD15 Silent p.L227L 0.15 TCGA-97-7938-01 19 3578827 3578827 C A HMG20B 3'UTR 0.30 TCGA-97-7938-01 19 36303452 36303452 C A PRODH2 Missense_Mutation p.A137S 0.48 tolerated(0.63) benign(0.011) TCGA-97-7938-01 19 37854120 37854120 G T HKR1 Missense_Mutation p.G475W 0.26 deleterious(0) probably_damaging(1) TCGA-97-7938-01 19 37854121 37854121 G T HKR1 Missense_Mutation p.G475V 0.25 deleterious(0) probably_damaging(0.995) TCGA-97-7938-01 19 37854344 37854344 G A HKR1 Silent p.G549G 0.18 TCGA-97-7938-01 19 3822144 3822144 T C ZFR2 Missense_Mutation p.S476G 0.42 deleterious(0) probably_damaging(0.95) TCGA-97-7938-01 19 38948829 38948829 C A RYR1 Silent p.T688T 0.22 TCGA-97-7938-01 19 42719285 42719285 C G DEDD2 Missense_Mutation p.G150R 0.20 tolerated(0.2) benign(0.323) TCGA-97-7938-01 19 42824524 42824524 G C TMEM145 Missense_Mutation p.A377P 0.26 deleterious(0.04) probably_damaging(0.926) TCGA-97-7938-01 19 44777052 44777052 G A ZNF233 Missense_Mutation p.G80E 0.21 deleterious(0.05) possibly_damaging(0.505) TCGA-97-7938-01 19 46289820 46289820 G A DMWD Missense_Mutation p.H312Y 0.29 tolerated(0.08) benign(0.052) TCGA-97-7938-01 19 47870342 47870342 C A DHX34 Silent p.A566A 0.27 TCGA-97-7938-01 19 48830119 48830119 G T EMP3 Silent p.L6L 0.24 TCGA-97-7938-01 19 48830120 48830120 G T EMP3 Missense_Mutation p.V7L 0.24 tolerated(0.19) possibly_damaging(0.472) TCGA-97-7938-01 19 49132455 49132455 C T SPHK2 Missense_Mutation p.P464S 0.27 tolerated(0.19) probably_damaging(0.962) TCGA-97-7938-01 19 50944254 50944254 C G MYBPC2 Silent p.A230A 0.30 TCGA-97-7938-01 19 54310817 54310817 C A NLRP12 Silent p.L725L 0.24 TCGA-97-7938-01 19 54758764 54758764 G C LILRB5 Silent p.P363P 0.12 TCGA-97-7938-01 19 54848130 54848130 G A LILRA4 Silent p.L413L 0.33 TCGA-97-7938-01 19 55087568 55087568 T A LILRA2 Missense_Mutation p.V416E 0.21 tolerated(0.07) possibly_damaging(0.696) TCGA-97-7938-01 19 55331182 55331182 C A KIR3DL1 Missense_Mutation p.P124T 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-97-7938-01 19 55331183 55331183 C A KIR3DL1 Missense_Mutation p.P124H 0.21 deleterious(0) probably_damaging(1) TCGA-97-7938-01 19 55685998 55685998 G T SYT5 Missense_Mutation p.L283M 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-97-7938-01 19 57867768 57867768 A G ZNF304 Silent p.P177P 0.31 TCGA-97-7938-01 19 8808217 8808217 T A ACTL9 Missense_Mutation p.T279S 0.23 tolerated(0.48) benign(0.012) TCGA-97-7938-01 19 8842168 8842168 A G OR2Z1 Missense_Mutation p.M260V 0.27 tolerated(0.2) probably_damaging(0.994) TCGA-97-7938-01 19 9061226 9061226 G C MUC16 Silent p.V8740V 0.10 TCGA-97-7938-01 1 100316648 100316648 A T AGL Missense_Mutation p.K17I 0.38 tolerated(0.13) benign(0.058) TCGA-97-7938-01 1 10165755 10165755 C G UBE4B Missense_Mutation p.S254R 0.17 deleterious(0) benign(0.307) TCGA-97-7938-01 1 10165759 10165759 A G UBE4B Missense_Mutation p.M256V 0.17 tolerated_low_confidence(0.16) benign(0.019) TCGA-97-7938-01 1 103355109 103355109 C A COL11A1 Missense_Mutation p.G1456C 0.27 unknown(0) TCGA-97-7938-01 1 107691365 107691365 C - NTNG1 Frame_Shift_Del p.Q51Sfs*7 0.19 TCGA-97-7938-01 1 110022152 110022152 A T SYPL2 Silent p.G267G 0.22 TCGA-97-7938-01 1 11007869 11007869 C A C1orf127 Missense_Mutation p.V775L 0.18 tolerated(0.29) possibly_damaging(0.893) TCGA-97-7938-01 1 11577656 11577656 C A PTCHD2 Missense_Mutation p.T629N 0.32 tolerated(0.14) benign(0.004) TCGA-97-7938-01 1 116202368 116202368 G A VANGL1 Missense_Mutation p.D60N 0.12 deleterious(0.04) benign(0.112) TCGA-97-7938-01 1 117120039 117120039 C - IGSF3 Frame_Shift_Del p.K1181Rfs*33 0.20 TCGA-97-7938-01 1 12907748 12907748 G T HNRNPCL1 Missense_Mutation p.P132H 0.36 deleterious(0) probably_damaging(0.947) TCGA-97-7938-01 1 152187691 152187691 A T HRNR Silent p.S2138S 0.03 TCGA-97-7938-01 1 152285383 152285383 G C FLG Missense_Mutation p.P660R 0.18 benign(0.118) TCGA-97-7938-01 1 152636846 152636846 C A LCE2D Missense_Mutation p.P89T 0.23 tolerated_low_confidence(0.74) unknown(0) TCGA-97-7938-01 1 152671416 152671416 T - LCE2A Frame_Shift_Del p.K15Sfs*55 0.18 TCGA-97-7938-01 1 155408305 155408305 C A ASH1L Nonsense_Mutation p.E1881* 0.49 TCGA-97-7938-01 1 158325805 158325805 A T CD1E Missense_Mutation p.T272S 0.17 tolerated(0.22) possibly_damaging(0.558) TCGA-97-7938-01 1 158517795 158517795 G T OR6Y1 Missense_Mutation p.S34Y 0.22 tolerated(0.42) benign(0.056) TCGA-97-7938-01 1 159176075 159176075 G T DARC Silent p.L284L 0.48 TCGA-97-7938-01 1 166839015 166839015 G A TADA1 Missense_Mutation p.L51F 0.05 deleterious(0.01) probably_damaging(0.956) TCGA-97-7938-01 1 172628584 172628584 G T FASLG Silent p.L81L 0.55 TCGA-97-7938-01 1 175372661 175372661 C A TNR Missense_Mutation p.K197N 0.25 tolerated(0.11) benign(0.356) TCGA-97-7938-01 1 17556647 17556647 A G PADI1 Missense_Mutation p.N333D 0.18 tolerated(0.3) benign(0.009) TCGA-97-7938-01 1 176640158 176640158 C T PAPPA2 Missense_Mutation p.H682Y 0.07 tolerated(0.09) probably_damaging(0.998) TCGA-97-7938-01 1 176708897 176708897 G T PAPPA2 Nonsense_Mutation p.G1312* 0.25 TCGA-97-7938-01 1 180240844 180240844 T C LHX4 Intron 0.35 TCGA-97-7938-01 1 183079686 183079686 T A LAMC1 Missense_Mutation p.N306K 0.39 tolerated(0.93) benign(0.049) TCGA-97-7938-01 1 185815174 185815174 A T HMCN1 Silent p.T95T 0.15 TCGA-97-7938-01 1 186114890 186114890 G T HMCN1 Nonsense_Mutation p.G4815* 0.08 TCGA-97-7938-01 1 190423813 190423813 C A BRINP3 Nonsense_Mutation p.G70* 0.15 TCGA-97-7938-01 1 193074524 193074524 G A GLRX2 Intron 0.28 TCGA-97-7938-01 1 197390932 197390932 C A CRB1 Silent p.I658I 0.20 TCGA-97-7938-01 1 201334424 201334424 C G TNNT2 Silent p.R92R 0.10 TCGA-97-7938-01 1 202287279 202287279 C A LGR6 Silent p.G616G 0.06 TCGA-97-7938-01 1 206652443 206652443 A G IKBKE Missense_Mutation p.T384A 0.19 tolerated(0.89) benign(0.001) TCGA-97-7938-01 1 209811879 209811879 C A LAMB3 Missense_Mutation p.D100Y 0.40 deleterious(0.03) probably_damaging(0.997) TCGA-97-7938-01 1 21054067 21054067 C G SH2D5 Silent p.L39L 0.28 TCGA-97-7938-01 1 215259899 215259899 G A KCNK2 Missense_Mutation p.V79M 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-97-7938-01 1 215345448 215345448 G T KCNK2 Nonsense_Mutation p.E249* 0.22 TCGA-97-7938-01 1 229635556 229635556 C A NUP133 Missense_Mutation p.V175F 0.19 deleterious(0.02) probably_damaging(0.988) TCGA-97-7938-01 1 230846207 230846207 C A AGT Silent p.G130G 0.22 TCGA-97-7938-01 1 233464558 233464558 C T MLK4 Missense_Mutation p.R262W 0.14 deleterious(0) probably_damaging(1) TCGA-97-7938-01 1 236891015 236891015 C A ACTN2 Silent p.R192R 0.15 TCGA-97-7938-01 1 236911069 236911069 C A ACTN2 Silent p.A503A 0.12 TCGA-97-7938-01 1 242159555 242159555 G T MAP1LC3C Silent p.T118T 0.15 TCGA-97-7938-01 1 247769025 247769025 C G OR2G3 Missense_Mutation p.I46M 0.45 deleterious(0.03) benign(0.21) TCGA-97-7938-01 1 248039386 248039386 G T TRIM58 Silent p.V352V 0.40 TCGA-97-7938-01 1 248085099 248085099 C A OR2T8 Silent p.P260P 0.40 TCGA-97-7938-01 1 248202392 248202392 G A OR2L2 Missense_Mutation p.V275I 0.19 tolerated(0.2) benign(0.248) TCGA-97-7938-01 1 248202407 248202407 C A OR2L2 Missense_Mutation p.L280I 0.19 tolerated(0.1) benign(0.311) TCGA-97-7938-01 1 248262809 248262809 G C OR2L13 Missense_Mutation p.M44I 0.47 deleterious(0.03) benign(0.02) TCGA-97-7938-01 1 248402257 248402257 C A OR2M4 Missense_Mutation p.N9K 0.29 tolerated(0.27) benign(0.013) TCGA-97-7938-01 1 27097658 27097658 G T ARID1A Missense_Mutation p.G1083C 0.37 unknown(0) TCGA-97-7938-01 1 32222314 32222314 C A BAI2 Missense_Mutation p.A42S 0.29 tolerated(0.19) benign(0.083) TCGA-97-7938-01 1 34663011 34663011 G T C1orf94 Missense_Mutation p.G169V 0.26 tolerated(0.13) benign(0.261) TCGA-97-7938-01 1 34663274 34663274 A G C1orf94 Missense_Mutation p.K257E 0.30 tolerated(0.06) probably_damaging(0.999) TCGA-97-7938-01 1 41536268 41536268 T A SCMH1 Silent p.T358T 0.27 TCGA-97-7938-01 1 53153487 53153487 C T COA7 Missense_Mutation p.D201N 0.12 tolerated(0.14) benign(0.003) TCGA-97-7938-01 1 54708962 54708962 C G SSBP3 Missense_Mutation p.S221T 0.32 tolerated(0.11) benign(0.138) TCGA-97-7938-01 1 57383331 57383331 C T C8A Missense_Mutation p.A566V 0.31 deleterious(0.01) possibly_damaging(0.641) TCGA-97-7938-01 1 70509696 70509696 A T LRRC7 Silent p.S1305S 0.24 TCGA-97-7938-01 1 79357340 79357340 G C ELTD1 Missense_Mutation p.L627V 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-97-7938-01 1 94574223 94574223 C T ABCA4 Missense_Mutation p.E118K 0.23 tolerated(0.52) benign(0.18) TCGA-97-7938-01 20 2775049 2775049 C G CPXM1 Silent p.L664L 0.25 TCGA-97-7938-01 20 31625383 31625383 C A BPIFB6 Missense_Mutation p.Q229K 0.33 tolerated(1) benign(0.001) TCGA-97-7938-01 20 34203957 34203957 C T SPAG4 Missense_Mutation p.S11L 0.43 deleterious_low_confidence(0) unknown(0) TCGA-97-7938-01 20 45003949 45003949 T C ELMO2 Missense_Mutation p.S331G 0.30 tolerated(0.12) benign(0.026) TCGA-97-7938-01 20 47989689 47989689 G T KCNB1 Missense_Mutation p.P803H 0.30 deleterious_low_confidence(0.01) benign(0.293) TCGA-97-7938-01 20 54824002 54824002 T A MC3R Missense_Mutation p.C35S 0.33 deleterious(0) possibly_damaging(0.859) TCGA-97-7938-01 20 60791330 60791330 G T HRH3 Missense_Mutation p.A357D 0.39 deleterious(0) probably_damaging(1) TCGA-97-7938-01 20 60888854 60888854 G - LAMA5 Frame_Shift_Del p.L2837Sfs*14 0.14 TCGA-97-7938-01 20 61950474 61950474 G T COL20A1 Nonsense_Mutation p.E910* 0.31 TCGA-97-7938-01 20 947845 947845 C A RSPO4 Missense_Mutation p.L127F 0.31 deleterious(0.04) benign(0.008) TCGA-97-7938-01 21 34038882 34038882 T G SYNJ1 Missense_Mutation p.T644P 0.25 deleterious(0) probably_damaging(1) TCGA-97-7938-01 21 34927181 34927181 G T SON Nonsense_Mutation p.G1882* 0.31 TCGA-97-7938-01 21 35821695 35821695 C T KCNE1 Missense_Mutation p.V80I 0.38 tolerated(0.3) benign(0.026) TCGA-97-7938-01 21 40559292 40559292 T A BRWD1 Missense_Mutation p.H2208L 0.38 tolerated_low_confidence(0.65) possibly_damaging(0.84) TCGA-97-7938-01 21 41033144 41033144 G A B3GALT5 Missense_Mutation p.V220M 0.31 deleterious(0) probably_damaging(0.964) TCGA-97-7938-01 21 46951949 46951949 G T SLC19A1 Silent p.L101L 0.12 TCGA-97-7938-01 21 47705219 47705219 G A MCM3AP 5'UTR 0.11 TCGA-97-7938-01 21 48022263 48022263 C A S100B Missense_Mutation p.E22D 0.21 tolerated(0.18) benign(0.066) TCGA-97-7938-01 22 18028016 18028016 G T CECR2 Silent p.A992A 0.38 TCGA-97-7938-01 22 22036798 22036798 G A PPIL2 Missense_Mutation p.D154N 0.14 deleterious(0) possibly_damaging(0.453) TCGA-97-7938-01 22 22937463 22937463 G T IGLV3-32 Missense_Mutation p.G94V 0.30 deleterious(0) possibly_damaging(0.895) TCGA-97-7938-01 22 25777402 25777402 C A LRP5L 5'UTR 0.39 TCGA-97-7938-01 22 44692609 44692609 T A KIAA1644 Missense_Mutation p.E75V 0.19 deleterious(0) possibly_damaging(0.485) TCGA-97-7938-01 2 113587852 113587852 G T IL1B 3'UTR 0.58 TCGA-97-7938-01 2 120209622 120209622 C A SCTR Missense_Mutation p.W295C 0.36 deleterious(0) probably_damaging(0.997) TCGA-97-7938-01 2 120219492 120219492 G A SCTR Missense_Mutation p.H241Y 0.15 tolerated(0.07) probably_damaging(0.978) TCGA-97-7938-01 2 131356267 131356267 G A CFC1 Silent p.A65A 0.12 TCGA-97-7938-01 2 131984486 131984486 C A POTEE Missense_Mutation p.L301M 0.11 deleterious_low_confidence(0.02) probably_damaging(0.976) TCGA-97-7938-01 2 132290881 132290881 A G CCDC74A Silent p.A349A 0.37 TCGA-97-7938-01 2 141707960 141707960 C A LRP1B Missense_Mutation p.G994W 0.33 probably_damaging(0.999) TCGA-97-7938-01 2 155555636 155555636 G T KCNJ3 Missense_Mutation p.V117F 0.24 deleterious(0.02) benign(0.395) TCGA-97-7938-01 2 155711758 155711758 G T KCNJ3 Missense_Mutation p.G480V 0.33 tolerated_low_confidence(0.53) benign(0.038) TCGA-97-7938-01 2 160690611 160690611 T C LY75-CD302 Missense_Mutation p.K1262R 0.29 tolerated(0.11) benign(0.015) TCGA-97-7938-01 2 169780333 169780333 C A ABCB11 Splice_Site p.X1256_splice 0.28 TCGA-97-7938-01 2 170062546 170062546 C A LRP2 Missense_Mutation p.D2515Y 0.23 probably_damaging(1) TCGA-97-7938-01 2 175436932 175436932 G C WIPF1 Missense_Mutation p.R201G 0.21 tolerated(0.09) probably_damaging(0.987) TCGA-97-7938-01 2 182766646 182766646 G C SSFA2 Missense_Mutation p.S289T 0.30 tolerated(0.13) probably_damaging(0.997) TCGA-97-7938-01 2 205986319 205986319 C A PARD3B Missense_Mutation p.Q271K 0.11 deleterious(0) probably_damaging(0.998) TCGA-97-7938-01 2 206872011 206872011 C G INO80D Missense_Mutation p.E639Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-97-7938-01 2 209051687 209051687 C T C2orf80 Silent p.K8K 0.38 TCGA-97-7938-01 2 211481168 211481168 C A CPS1 Missense_Mutation p.L870I 0.25 tolerated(0.29) benign(0.003) TCGA-97-7938-01 2 215440422 215440422 A G VWC2L Missense_Mutation p.I183V 0.28 tolerated(1) benign(0.025) TCGA-97-7938-01 2 219532829 219532829 C A RNF25 Missense_Mutation p.R87L 0.34 deleterious(0) probably_damaging(0.999) TCGA-97-7938-01 2 239040110 239040110 T A ESPNL Missense_Mutation p.F919I 0.39 deleterious(0) probably_damaging(0.931) TCGA-97-7938-01 2 27354669 27354669 T C PREB Missense_Mutation p.I344V 0.26 deleterious(0.01) benign(0.38) TCGA-97-7938-01 2 28634930 28634930 G T FOSL2 Missense_Mutation p.R199L 0.41 tolerated(0.28) benign(0.042) TCGA-97-7938-01 2 29430080 29430080 C A ALK Nonsense_Mutation p.E1299* 0.32 TCGA-97-7938-01 2 33413709 33413709 C A LTBP1 Missense_Mutation p.H498N 0.34 deleterious(0) possibly_damaging(0.904) TCGA-97-7938-01 2 36623783 36623783 C T CRIM1 Missense_Mutation p.L120F 0.34 deleterious(0.01) probably_damaging(0.986) TCGA-97-7938-01 2 44102327 44102327 T C ABCG8 Missense_Mutation p.Y511H 0.32 deleterious(0) probably_damaging(0.995) TCGA-97-7938-01 2 48915419 48915419 C A LHCGR Missense_Mutation p.S506I 0.16 deleterious(0) probably_damaging(0.999) TCGA-97-7938-01 2 61433248 61433248 C A USP34 Missense_Mutation p.A3020S 0.27 tolerated(0.32) benign(0.04) TCGA-97-7938-01 2 68384639 68384639 A C WDR92 5'UTR 0.19 TCGA-97-7938-01 2 80831229 80831229 T A CTNNA2 Missense_Mutation p.D740E 0.33 deleterious(0.01) possibly_damaging(0.586) TCGA-97-7938-01 2 98263849 98263849 A G COX5B Missense_Mutation p.R74G 0.26 deleterious(0) benign(0.102) TCGA-97-7938-01 3 102187852 102187852 G C ZPLD1 Missense_Mutation p.S285T 0.39 deleterious(0.03) probably_damaging(0.979) TCGA-97-7938-01 3 108179195 108179195 C T MYH15 Silent p.K648K 0.35 TCGA-97-7938-01 3 108818286 108818286 A C MORC1 Missense_Mutation p.F114L 0.21 tolerated(0.05) possibly_damaging(0.874) TCGA-97-7938-01 3 12613724 12613724 G A MKRN2 Missense_Mutation p.S165N 0.30 tolerated(0.35) benign(0.001) TCGA-97-7938-01 3 12950774 12950774 C A IQSEC1 Missense_Mutation p.E873D 0.20 deleterious(0.02) benign(0.043) TCGA-97-7938-01 3 133119269 133119269 C G BFSP2 Missense_Mutation p.C114W 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-97-7938-01 3 136117607 136117607 T C STAG1 Missense_Mutation p.D754G 0.45 tolerated(0.29) benign(0.062) TCGA-97-7938-01 3 142681067 142681067 G T PAQR9 Missense_Mutation p.S371Y 0.23 deleterious(0.01) benign(0.125) TCGA-97-7938-01 3 147128612 147128612 C A ZIC1 Missense_Mutation p.P238H 0.21 deleterious(0) probably_damaging(0.998) TCGA-97-7938-01 3 164777757 164777757 C A SI Missense_Mutation p.W360L 0.27 deleterious(0.01) probably_damaging(0.911) TCGA-97-7938-01 3 167322098 167322098 T A WDR49 Missense_Mutation p.N32Y 0.20 deleterious(0) probably_damaging(0.994) TCGA-97-7938-01 3 182591803 182591803 G T ATP11B Missense_Mutation p.R751I 0.32 deleterious(0.04) possibly_damaging(0.487) TCGA-97-7938-01 3 182591804 182591804 G T ATP11B Splice_Site p.X751_splice 0.32 TCGA-97-7938-01 3 27346303 27346303 G A NEK10 Silent p.D321D 0.28 TCGA-97-7938-01 3 44488733 44488733 C A ZNF445 Missense_Mutation p.R810S 0.34 deleterious(0) unknown(0) TCGA-97-7938-01 3 44598651 44598651 C T ZKSCAN7 Nonsense_Mutation p.Q38* 0.28 TCGA-97-7938-01 3 52090174 52090174 G A DUSP7 Missense_Mutation p.A70V 0.50 tolerated(0.27) benign(0.007) TCGA-97-7938-01 3 69077407 69077407 T A TMF1 Silent p.V878V 0.16 TCGA-97-7938-01 3 73432857 73432857 G C PDZRN3 Missense_Mutation p.R954G 0.25 deleterious(0) probably_damaging(0.999) TCGA-97-7938-01 3 74548901 74548901 C G CNTN3 Missense_Mutation p.E31Q 0.27 tolerated(0.14) probably_damaging(0.997) TCGA-97-7938-01 3 88040885 88040885 C T HTR1F Missense_Mutation p.S329F 0.13 tolerated(1) probably_damaging(0.961) TCGA-97-7938-01 3 89390222 89390222 G A EPHA3 Splice_Site p.X324_splice 0.20 TCGA-97-7938-01 3 93593219 93593219 G T PROS1 Missense_Mutation p.A634D 0.26 deleterious(0) probably_damaging(0.939) TCGA-97-7938-01 3 97887754 97887754 G T OR5H15 Missense_Mutation p.A71S 0.27 tolerated(0.52) benign(0.077) TCGA-97-7938-01 3 9948474 9948474 C T IL17RE Missense_Mutation p.R151C 0.04 deleterious(0) possibly_damaging(0.808) TCGA-97-7938-01 4 134072410 134072410 C A PCDH10 Missense_Mutation p.A372E 0.40 tolerated(0.45) probably_damaging(0.92) TCGA-97-7938-01 4 13603505 13603505 T C BOD1L1 Missense_Mutation p.I1673M 0.35 benign(0.02) TCGA-97-7938-01 4 162380377 162380377 G T FSTL5 Nonsense_Mutation p.S568* 0.35 TCGA-97-7938-01 4 169341505 169341505 A T DDX60L Silent p.T807T 0.25 TCGA-97-7938-01 4 2209923 2209923 T C POLN Missense_Mutation p.S169G 0.21 deleterious(0.04) benign(0.015) TCGA-97-7938-01 4 48899870 48899870 C T OCIAD2 Silent p.L56L 0.20 TCGA-97-7938-01 4 66467428 66467428 C A EPHA5 Nonsense_Mutation p.E281* 0.23 TCGA-97-7938-01 4 68699078 68699078 A T TMPRSS11D Missense_Mutation p.L179Q 0.35 tolerated(0.48) probably_damaging(0.994) TCGA-97-7938-01 4 71201476 71201476 C A CABS1 Silent p.T240T 0.15 TCGA-97-7938-01 4 83748591 83748591 G T SEC31A Silent p.G1074G 0.30 TCGA-97-7938-01 4 86116 86116 C T Z95704.2 RNA 0.25 TCGA-97-7938-01 4 891884 891884 C A GAK Silent p.T196T 0.32 TCGA-97-7938-01 4 91229853 91229853 G T CCSER1 Nonsense_Mutation p.E140* 0.21 TCGA-97-7938-01 4 94006431 94006431 G A GRID2 Splice_Site p.X177_splice 0.23 TCGA-97-7938-01 4 96762478 96762478 A T PDHA2 3'UTR 0.31 TCGA-97-7938-01 5 125885926 125885926 G C ALDH7A1 Missense_Mutation p.I459M 0.26 deleterious(0.04) benign(0.094) TCGA-97-7938-01 5 127638739 127638739 C G FBN2 Missense_Mutation p.C1948S 0.31 deleterious(0) probably_damaging(0.999) TCGA-97-7938-01 5 134143536 134143536 G A DDX46 Missense_Mutation p.V685M 0.26 deleterious(0) probably_damaging(1) TCGA-97-7938-01 5 140166363 140166363 G T PCDHA1 Missense_Mutation p.G163V 0.32 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-97-7938-01 5 140166396 140166396 C A PCDHA1 Missense_Mutation p.P174Q 0.30 tolerated_low_confidence(0.09) benign(0.14) TCGA-97-7938-01 5 140250092 140250092 A C PCDHA11 Silent p.P468P 0.29 TCGA-97-7938-01 5 140481843 140481843 G T PCDHB3 Missense_Mutation p.G537V 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-97-7938-01 5 140531177 140531177 C A PCDHB6 Missense_Mutation p.P447T 0.26 deleterious(0) probably_damaging(0.969) TCGA-97-7938-01 5 140603627 140603627 G A PCDHB14 Missense_Mutation p.D184N 0.35 tolerated_low_confidence(1) possibly_damaging(0.87) TCGA-97-7938-01 5 145843189 145843189 C T TCERG1 Missense_Mutation p.A323V 0.14 tolerated(0.35) unknown(0) TCGA-97-7938-01 5 145843190 145843190 T G TCERG1 Silent p.A323A 0.14 TCGA-97-7938-01 5 145843192 145843192 C T TCERG1 Missense_Mutation p.P324L 0.17 deleterious(0.01) unknown(0) TCGA-97-7938-01 5 148388422 148388422 G C SH3TC2 Missense_Mutation p.T1157R 0.27 tolerated(0.35) benign(0.002) TCGA-97-7938-01 5 148691761 148691761 G A AFAP1L1 Silent p.L338L 0.08 TCGA-97-7938-01 5 156590064 156590064 G C FAM71B Missense_Mutation p.S404R 0.12 tolerated(0.11) probably_damaging(0.951) TCGA-97-7938-01 5 158523361 158523361 G C EBF1 Silent p.L115L 0.14 TCGA-97-7938-01 5 15928183 15928183 C A FBXL7 Silent p.A104A 0.16 TCGA-97-7938-01 5 169468121 169468121 C A DOCK2 Missense_Mutation p.T1243K 0.22 deleterious(0) probably_damaging(0.993) TCGA-97-7938-01 5 171471803 171471803 G A STK10 3'UTR 0.29 TCGA-97-7938-01 5 175305729 175305729 C A CPLX2 5'UTR 0.29 TCGA-97-7938-01 5 178699960 178699960 G T ADAMTS2 Silent p.R214R 0.28 TCGA-97-7938-01 5 23526445 23526445 C A PRDM9 Missense_Mutation p.F416L 0.20 tolerated(0.41) benign(0.001) TCGA-97-7938-01 5 24491722 24491722 G T CDH10 Silent p.A613A 0.16 TCGA-97-7938-01 5 31401494 31401494 C A DROSHA 3'UTR 0.23 TCGA-97-7938-01 5 32739072 32739072 T C NPR3 Missense_Mutation p.F332S 0.24 deleterious(0) probably_damaging(0.948) TCGA-97-7938-01 5 45396684 45396684 G A HCN1 Silent p.I380I 0.19 TCGA-97-7938-01 5 5146296 5146296 C A ADAMTS16 Missense_Mutation p.H77N 0.16 deleterious(0.04) possibly_damaging(0.644) TCGA-97-7938-01 5 54581634 54581634 C A DHX29 Missense_Mutation p.W374C 0.16 deleterious(0) probably_damaging(0.999) TCGA-97-7938-01 5 54581635 54581635 C A DHX29 Missense_Mutation p.W374L 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-97-7938-01 5 7766919 7766919 G T ADCY2 Silent p.P738P 0.20 TCGA-97-7938-01 5 89979496 89979496 A G GPR98 Missense_Mutation p.I1920V 0.28 benign(0) TCGA-97-7938-01 5 9052006 9052006 A G SEMA5A Missense_Mutation p.F942L 0.24 tolerated(0.51) benign(0.009) TCGA-97-7938-01 6 114181669 114181669 G A MARCKS Missense_Mutation p.A305T 0.12 tolerated_low_confidence(0.15) unknown(0) TCGA-97-7938-01 6 121615715 121615715 C A TBC1D32 Splice_Site p.X411_splice 0.44 TCGA-97-7938-01 6 137528097 137528097 C G IFNGR1 Intron 0.50 TCGA-97-7938-01 6 155450943 155450943 C A TIAM2 Missense_Mutation p.Q196K 0.34 deleterious_low_confidence(0.04) benign(0.035) TCGA-97-7938-01 6 168226960 168226960 C A MLLT4 5'Flank 0.38 TCGA-97-7938-01 6 17292285 17292285 G T RBM24 Missense_Mutation p.A216S 0.32 tolerated(0.27) benign(0.051) TCGA-97-7938-01 6 25826688 25826688 C A SLC17A1 Splice_Site p.X69_splice 0.09 TCGA-97-7938-01 6 2623839 2623839 G T C6orf195 Missense_Mutation p.P73H 0.14 deleterious_low_confidence(0.02) probably_damaging(0.95) TCGA-97-7938-01 6 26408110 26408110 G T BTN3A1 Silent p.G215G 0.23 TCGA-97-7938-01 6 28887798 28887798 C A TRIM27 Missense_Mutation p.E246D 0.22 tolerated(0.12) possibly_damaging(0.636) TCGA-97-7938-01 6 30866676 30866676 G T DDR1 Silent p.T827T 0.39 TCGA-97-7938-01 6 43222290 43222290 C G TTBK1 Missense_Mutation p.N159K 0.24 possibly_damaging(0.842) TCGA-97-7938-01 6 44280862 44280862 G A AARS2 Missense_Mutation p.R67C 0.38 tolerated(0.17) possibly_damaging(0.875) TCGA-97-7938-01 6 46518064 46518064 C A CYP39A1 3'UTR 0.37 TCGA-97-7938-01 6 46657549 46657549 G T TDRD6 Missense_Mutation p.D562Y 0.21 deleterious(0) probably_damaging(0.964) TCGA-97-7938-01 6 54805297 54805297 G C FAM83B Missense_Mutation p.D510H 0.19 deleterious(0.01) possibly_damaging(0.815) TCGA-97-7938-01 6 56819243 56819243 G T BEND6 5'Flank 0.36 TCGA-97-7938-01 6 66115233 66115233 G T EYS Missense_Mutation p.P297H 0.40 tolerated(0.54) benign(0) TCGA-97-7938-01 6 66115234 66115234 G T EYS Missense_Mutation p.P297T 0.40 tolerated(0.39) benign(0.003) TCGA-97-7938-01 6 8064636 8064636 C T BLOC1S5 5'UTR 0.15 TCGA-97-7938-01 6 90365644 90365644 A T MDN1 Missense_Mutation p.M5110K 0.46 unknown(0) TCGA-97-7938-01 6 90604546 90604546 A G GJA10 Missense_Mutation p.N120S 0.25 tolerated(0.43) benign(0.01) TCGA-97-7938-01 7 100683730 100683730 T C MUC17 Silent p.P3011P 0.33 TCGA-97-7938-01 7 126173481 126173481 C A GRM8 Missense_Mutation p.R652L 0.29 deleterious(0) probably_damaging(0.951) TCGA-97-7938-01 7 142104507 142104507 G T TRBV6-9 Missense_Mutation p.A16E 0.28 deleterious(0.01) possibly_damaging(0.755) TCGA-97-7938-01 7 142239828 142239828 G A TRBV9 Missense_Mutation p.P18S 0.14 tolerated(0.62) benign(0.003) TCGA-97-7938-01 7 142612158 142612158 C A TRPV5 Missense_Mutation p.G449W 0.25 deleterious(0.04) probably_damaging(1) TCGA-97-7938-01 7 143632559 143632559 C A OR2F2 Silent p.V78V 0.27 TCGA-97-7938-01 7 151962165 151962165 G T KMT2C Missense_Mutation p.A381E 0.04 probably_damaging(0.999) TCGA-97-7938-01 7 17349710 17349710 C T AHR Silent p.L72L 0.25 TCGA-97-7938-01 7 21788231 21788231 G C DNAH11 Missense_Mutation p.Q2855H 0.17 benign(0.014) TCGA-97-7938-01 7 23300116 23300116 C A GPNMB Silent p.R248R 0.26 TCGA-97-7938-01 7 42005519 42005519 C A GLI3 Missense_Mutation p.R1051L 0.31 tolerated(0.21) possibly_damaging(0.734) TCGA-97-7938-01 7 43601556 43601556 G C HECW1 3'UTR 0.50 TCGA-97-7938-01 7 47384421 47384421 C A TNS3 Missense_Mutation p.R861L 0.34 tolerated(0.32) benign(0.004) TCGA-97-7938-01 7 57188822 57188822 C A ZNF479 Missense_Mutation p.E100D 0.21 tolerated(0.1) benign(0.004) TCGA-97-7938-01 7 63982213 63982213 C A ZNF680 Missense_Mutation p.A307S 0.17 tolerated(1) benign(0.002) TCGA-97-7938-01 7 81388018 81388018 A G HGF Silent p.Y119Y 0.33 TCGA-97-7938-01 7 91842527 91842527 G A KRIT1 Silent p.L669L 0.26 TCGA-97-7938-01 7 97875324 97875324 G C TECPR1 Missense_Mutation p.C45W 0.18 deleterious(0) probably_damaging(0.981) TCGA-97-7938-01 8 101936182 101936182 C A YWHAZ Splice_Site p.X226_splice 0.44 TCGA-97-7938-01 8 114186070 114186070 C G CSMD3 Missense_Mutation p.G197A 0.18 deleterious(0) benign(0.071) TCGA-97-7938-01 8 133196529 133196529 C A KCNQ3 Missense_Mutation p.R188L 0.41 tolerated(0.06) possibly_damaging(0.892) TCGA-97-7938-01 8 139160884 139160884 T C FAM135B Silent p.E1109E 0.65 TCGA-97-7938-01 8 143395770 143395770 G A TSNARE1 Missense_Mutation p.P369L 0.25 tolerated(0.06) probably_damaging(0.982) TCGA-97-7938-01 8 143921848 143921848 G C GML 5'UTR 0.39 TCGA-97-7938-01 8 144296999 144296999 C A GPIHBP1 Missense_Mutation p.T98N 0.22 deleterious(0.01) benign(0.058) TCGA-97-7938-01 8 144994908 144994908 C G PLEC Silent p.A3164A 0.51 TCGA-97-7938-01 8 2832025 2832025 C G CSMD1 Silent p.T2896T 0.50 TCGA-97-7938-01 8 48882525 48882525 T G MCM4 Missense_Mutation p.L448V 0.23 tolerated(0.3) benign(0.008) TCGA-97-7938-01 8 51351120 51351120 C T SNTG1 Silent p.I60I 0.39 TCGA-97-7938-01 8 57354112 57354112 C T PENK Missense_Mutation p.G175S 0.51 tolerated(0.45) benign(0.006) TCGA-97-7938-01 8 63985591 63985591 T C TTPA Silent p.L87L 0.23 TCGA-97-7938-01 8 72211423 72211423 A T EYA1 Missense_Mutation p.Y229N 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-97-7938-01 8 95164334 95164334 C G CDH17 Missense_Mutation p.D520H 0.05 deleterious(0) probably_damaging(1) TCGA-97-7938-01 9 104357227 104357227 G T PPP3R2 5'UTR 0.33 TCGA-97-7938-01 9 107267135 107267135 A T OR13F1 Missense_Mutation p.I198F 0.34 tolerated(0.22) benign(0.026) TCGA-97-7938-01 9 115422119 115422119 C T KIAA1958 Missense_Mutation p.R641W 0.09 deleterious(0.02) possibly_damaging(0.706) TCGA-97-7938-01 9 119115904 119115904 G A PAPPA Silent p.R1393R 0.28 TCGA-97-7938-01 9 124855658 124855658 C T TTLL11 Missense_Mutation p.A14T 0.32 tolerated_low_confidence(0.31) benign(0.001) TCGA-97-7938-01 9 138376987 138376987 G T PPP1R26 Missense_Mutation p.A211S 0.29 tolerated(0.13) benign(0.056) TCGA-97-7938-01 9 139973038 139973038 C A UAP1L1 Missense_Mutation p.N193K 0.14 deleterious(0.01) probably_damaging(0.99) TCGA-97-7938-01 9 19316466 19316466 C T DENND4C Silent p.C513C 0.55 TCGA-97-7938-01 9 27359199 27359199 T A MOB3B Nonsense_Mutation p.K152* 0.27 TCGA-97-7938-01 9 27949358 27949358 G A LINGO2 Missense_Mutation p.P438S 0.25 deleterious(0) probably_damaging(0.999) TCGA-97-7938-01 9 32541401 32541401 T C TOPORS Missense_Mutation p.D1041G 0.26 tolerated_low_confidence(0.09) unknown(0) TCGA-97-7938-01 9 32635371 32635371 C T TAF1L Silent p.G69G 0.22 TCGA-97-7938-01 9 35663038 35663038 C T ARHGEF39 Missense_Mutation p.R193K 0.14 tolerated(0.72) benign(0.003) TCGA-97-7938-01 9 43625072 43625072 G A SPATA31A6 Silent p.L1205L 0.29 TCGA-97-7938-01 9 94486827 94486827 C A ROR2 Missense_Mutation p.G650V 0.31 tolerated(0.05) probably_damaging(0.91) TCGA-97-7938-01 9 95609655 95609655 C G ZNF484 Missense_Mutation p.E474Q 0.15 tolerated(0.07) benign(0.135) TCGA-97-7938-01 9 97082809 97082809 C A NUTM2F Missense_Mutation p.R350M 0.30 deleterious(0.01) possibly_damaging(0.553) TCGA-97-7938-01 X 100505499 100505499 G T DRP2 Missense_Mutation p.R543L 0.30 deleterious(0.01) possibly_damaging(0.737) TCGA-97-7938-01 X 100548010 100548010 G C TAF7L Silent p.L8L 0.23 TCGA-97-7938-01 X 101092551 101092551 T A NXF5 Missense_Mutation p.Q332L 0.33 tolerated(0.05) benign(0.12) TCGA-97-7938-01 X 101911737 101911737 G T GPRASP1 Missense_Mutation p.G966W 0.22 deleterious(0) probably_damaging(0.981) TCGA-97-7938-01 X 101911813 101911813 C G GPRASP1 Missense_Mutation p.S991C 0.15 deleterious(0.02) possibly_damaging(0.701) TCGA-97-7938-01 X 102331194 102331194 G T NXF3 3'UTR 0.20 TCGA-97-7938-01 X 102931962 102931962 C A MORF4L2 5'UTR 0.19 TCGA-97-7938-01 X 103041545 103041545 G A PLP1 Missense_Mutation p.A115T 0.30 tolerated(0.12) possibly_damaging(0.553) TCGA-97-7938-01 X 103041617 103041617 T A PLP1 Missense_Mutation p.C139S 0.28 deleterious(0.01) probably_damaging(0.987) TCGA-97-7938-01 X 10417750 10417750 G T MID1 Silent p.A554A 0.27 TCGA-97-7938-01 X 105970235 105970235 C G RNF128 Missense_Mutation p.P31R 0.13 tolerated(0.48) benign(0.315) TCGA-97-7938-01 X 106959973 106959973 G T TSC22D3 Intron 0.32 TCGA-97-7938-01 X 107811895 107811895 G C COL4A5 Missense_Mutation p.G105R 0.14 unknown(0) TCGA-97-7938-01 X 110951467 110951467 C A ALG13 Missense_Mutation p.P199H 0.26 tolerated_low_confidence(0.22) benign(0.001) TCGA-97-7938-01 X 118893606 118893606 G T SOWAHD 3'UTR 0.24 TCGA-97-7938-01 X 118972440 118972440 T A UPF3B Missense_Mutation p.E299D 0.14 tolerated(0.12) benign(0.018) TCGA-97-7938-01 X 118974609 118974609 A G UPF3B Silent p.N282N 0.24 TCGA-97-7938-01 X 119495983 119495983 C A ATP1B4 5'UTR 0.24 TCGA-97-7938-01 X 123514321 123514321 C A TENM1 3'UTR 0.18 TCGA-97-7938-01 X 128709136 128709136 G A OCRL Missense_Mutation p.R541Q 0.39 tolerated(0.42) benign(0.001) TCGA-97-7938-01 X 128901599 128901599 C A XPNPEP2 Silent p.T587T 0.28 TCGA-97-7938-01 X 129146954 129146954 G T BCORL1 Missense_Mutation p.S69I 0.21 unknown(0) TCGA-97-7938-01 X 129149417 129149417 G A BCORL1 Missense_Mutation p.R890Q 0.19 probably_damaging(0.996) TCGA-97-7938-01 X 129281502 129281502 G T AIFM1 Missense_Mutation p.L191M 0.19 deleterious(0.02) probably_damaging(0.986) TCGA-97-7938-01 X 129506943 129506943 G A SLC25A14 3'UTR 0.25 TCGA-97-7938-01 X 132351379 132351379 C T TFDP3 Silent p.G303G 0.24 TCGA-97-7938-01 X 136649358 136649358 G C ZIC3 Missense_Mutation p.A170P 0.22 tolerated(0.56) benign(0) TCGA-97-7938-01 X 13825877 13825877 C A GPM6B Missense_Mutation p.A25S 0.38 tolerated_low_confidence(0.61) benign(0.033) TCGA-97-7938-01 X 13825879 13825879 C G GPM6B Missense_Mutation p.R24T 0.37 tolerated_low_confidence(0.2) benign(0.014) TCGA-97-7938-01 X 138878530 138878530 C A ATP11C Missense_Mutation p.G373C 0.33 deleterious(0) probably_damaging(1) TCGA-97-7938-01 X 140335859 140335859 G T SPANXC Missense_Mutation p.P29T 0.13 deleterious(0.04) benign(0.112) TCGA-97-7938-01 X 149761086 149761086 G T MTM1 Missense_Mutation p.A4S 0.31 tolerated_low_confidence(0.24) benign(0.005) TCGA-97-7938-01 X 149809819 149809819 G C MTM1 Missense_Mutation p.L202F 0.32 tolerated(0.15) probably_damaging(1) TCGA-97-7938-01 X 150572114 150572114 C T VMA21 Missense_Mutation p.S22L 0.21 deleterious(0) benign(0.02) TCGA-97-7938-01 X 152686378 152686378 G T ZFP92 Silent p.A181A 0.33 TCGA-97-7938-01 X 152937358 152937358 C A PNCK Missense_Mutation p.G214W 0.29 deleterious(0) probably_damaging(0.999) TCGA-97-7938-01 X 152957557 152957557 G T SLC6A8 Nonsense_Mutation p.G258* 0.21 TCGA-97-7938-01 X 153191677 153191677 G T ARHGAP4 5'UTR 0.45 TCGA-97-7938-01 X 153200939 153200939 C A RENBP Intron 0.28 TCGA-97-7938-01 X 153247965 153247965 C A TMEM187 Missense_Mutation p.A151D 0.20 tolerated(0.24) benign(0.164) TCGA-97-7938-01 X 153533764 153533764 C A TKTL1 Silent p.V81V 0.39 TCGA-97-7938-01 X 15840940 15840940 G T ZRSR2 Missense_Mutation p.A342S 0.25 deleterious(0.03) possibly_damaging(0.757) TCGA-97-7938-01 X 17746878 17746878 A G NHS Silent p.L1423L 0.27 TCGA-97-7938-01 X 21534647 21534647 C - CNKSR2 Frame_Shift_Del p.P286Rfs*6 0.22 TCGA-97-7938-01 X 21627197 21627197 C A CNKSR2 Nonsense_Mutation p.C718* 0.31 TCGA-97-7938-01 X 26157161 26157161 G T MAGEB18 Missense_Mutation p.C20F 0.31 deleterious(0.02) benign(0.079) TCGA-97-7938-01 X 2933093 2933093 C T ARSH Silent p.Y141Y 0.27 TCGA-97-7938-01 X 30254096 30254096 C A MAGEB3 Silent p.R19R 0.22 TCGA-97-7938-01 X 30254525 30254525 G T MAGEB3 Missense_Mutation p.V162L 0.31 tolerated(1) benign(0.192) TCGA-97-7938-01 X 30578036 30578036 G T CXorf21 Missense_Mutation p.S146Y 0.27 tolerated(1) benign(0.004) TCGA-97-7938-01 X 32398778 32398778 T A DMD Missense_Mutation p.Q1565L 0.31 possibly_damaging(0.465) TCGA-97-7938-01 X 34961170 34961170 C A FAM47B Missense_Mutation p.D74E 0.28 tolerated(0.53) possibly_damaging(0.83) TCGA-97-7938-01 X 34961213 34961213 G T FAM47B Missense_Mutation p.D89Y 0.34 tolerated(0.06) probably_damaging(0.999) TCGA-97-7938-01 X 47917869 47917869 C G ZNF630 Missense_Mutation p.L654F 0.27 tolerated(0.09) benign(0.02) TCGA-97-7938-01 X 49138527 49138527 G T PPP1R3F Splice_Site p.X381_splice 0.29 TCGA-97-7938-01 X 50121611 50121611 G A DGKK RNA 0.19 TCGA-97-7938-01 X 53459013 53459013 C A HSD17B10 Missense_Mutation p.G137C 0.30 deleterious(0.05) benign(0.016) TCGA-97-7938-01 X 53579703 53579703 C G HUWE1 Missense_Mutation p.Q2882H 0.34 benign(0.001) TCGA-97-7938-01 X 54496629 54496629 G T FGD1 Missense_Mutation p.S307R 0.58 tolerated(0.09) benign(0.006) TCGA-97-7938-01 X 55042168 55042168 G T ALAS2 Silent p.I337I 0.23 TCGA-97-7938-01 X 55116965 55116965 G T PAGE2 Nonsense_Mutation p.E39* 0.34 TCGA-97-7938-01 X 56310764 56310764 G T KLF8 Missense_Mutation p.C306F 0.22 deleterious(0) possibly_damaging(0.844) TCGA-97-7938-01 X 56591627 56591627 G T UBQLN2 Missense_Mutation p.D441Y 0.24 deleterious(0) probably_damaging(0.971) TCGA-97-7938-01 X 67936219 67936219 G T STARD8 Missense_Mutation p.M81I 0.20 tolerated(0.1) benign(0.359) TCGA-97-7938-01 X 68382689 68382689 A T PJA1 Silent p.A131A 0.40 TCGA-97-7938-01 X 69902567 69902567 C A TEX11 Missense_Mutation p.K386N 0.33 tolerated(0.28) benign(0.272) TCGA-97-7938-01 X 70073099 70073099 G T TEX11 Missense_Mutation p.A150D 0.28 tolerated(0.62) benign(0.143) TCGA-97-7938-01 X 70465190 70465190 C G ZMYM3 Missense_Mutation p.K1002N 0.30 deleterious(0.02) benign(0.162) TCGA-97-7938-01 X 71350845 71350845 G A RGAG4 Silent p.P182P 0.17 TCGA-97-7938-01 X 73069290 73069290 C A XIST RNA 0.20 TCGA-97-7938-01 X 75648363 75648363 C T MAGEE1 Missense_Mutation p.R14C 0.22 deleterious_low_confidence(0.04) possibly_damaging(0.551) TCGA-97-7938-01 X 78011480 78011480 G T LPAR4 3'UTR 0.30 TCGA-97-7941-01 10 118137968 118137968 T C CCDC172 Silent p.D229D 0.13 TCGA-97-7941-01 10 128153375 128153375 C G C10orf90 Missense_Mutation p.S475T 0.12 tolerated(0.25) benign(0.311) TCGA-97-7941-01 10 22675764 22675764 G T SPAG6 Missense_Mutation p.R185M 0.20 deleterious(0) probably_damaging(0.969) TCGA-97-7941-01 10 23235079 23235079 C A ARMC3 Missense_Mutation p.P19T 0.10 tolerated(0.12) benign(0.356) TCGA-97-7941-01 10 87628808 87628808 G C GRID1 Missense_Mutation p.L304V 0.16 tolerated(0.37) benign(0.075) TCGA-97-7941-01 11 106681042 106681042 C A GUCY1A2 Nonsense_Mutation p.E457* 0.05 TCGA-97-7941-01 11 117063023 117063023 C T SIDT2 Silent p.I642I 0.06 TCGA-97-7941-01 11 123777516 123777516 C A OR8D4 Silent p.I126I 0.19 TCGA-97-7941-01 11 15243191 15243191 G T INSC Missense_Mutation p.V377F 0.08 deleterious(0.01) benign(0.089) TCGA-97-7941-01 11 18418443 18418443 C A LDHA Silent p.T47T 0.11 TCGA-97-7941-01 11 26682071 26682071 G T ANO3 3'UTR 0.23 TCGA-97-7941-01 11 60615506 60615506 G T CCDC86 Nonsense_Mutation p.E290* 0.18 TCGA-97-7941-01 11 619514 619514 G A CDHR5 Missense_Mutation p.T418I 0.16 deleterious(0) probably_damaging(0.986) TCGA-97-7941-01 11 65393401 65393401 A G PCNXL3 Silent p.A1085A 0.18 TCGA-97-7941-01 11 6913156 6913156 G T OR2D2 Silent p.T192T 0.06 TCGA-97-7941-01 12 121947779 121947779 T A KDM2B Missense_Mutation p.E413V 0.19 tolerated(0.08) benign(0.009) TCGA-97-7941-01 12 14941933 14941933 G A WBP11 Missense_Mutation p.P482S 0.11 tolerated_low_confidence(0.27) unknown(0) TCGA-97-7941-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.28 deleterious(0.02) possibly_damaging(0.773) TCGA-97-7941-01 12 34179154 34179154 G T ALG10 Missense_Mutation p.M242I 0.15 tolerated(0.49) benign(0.004) TCGA-97-7941-01 13 21166516 21166516 C T IFT88 Missense_Mutation p.S133F 0.05 deleterious(0) benign(0.038) TCGA-97-7941-01 14 105477868 105477868 G C CDCA4 Silent p.T133T 0.05 TCGA-97-7941-01 14 106518634 106518634 G C IGHV3-7 Silent p.L39L 0.12 TCGA-97-7941-01 14 20876303 20876303 G C TEP1 Missense_Mutation p.S99C 0.03 deleterious_low_confidence(0.02) probably_damaging(0.909) TCGA-97-7941-01 14 70713834 70713834 G A ADAM21P1 RNA 0.08 TCGA-97-7941-01 15 76225419 76225422 CATA - FBXO22 Frame_Shift_Del p.H398Wfs*8 0.13 TCGA-97-7941-01 16 1306674 1306674 G T TPSD1 Silent p.A80A 0.12 TCGA-97-7941-01 16 29994190 29994190 G T TAOK2 Missense_Mutation p.G323C 0.19 deleterious(0) probably_damaging(1) TCGA-97-7941-01 16 48382016 48382016 G - LONP2 Frame_Shift_Del p.G718Efs*31 0.12 TCGA-97-7941-01 16 49669967 49669967 C A ZNF423 Silent p.T1032T 0.12 TCGA-97-7941-01 16 5140288 5140288 C T FAM86A Missense_Mutation p.R180H 0.18 tolerated(0.6) benign(0.002) TCGA-97-7941-01 16 67262440 67262440 C T TMEM208 Missense_Mutation p.H69Y 0.25 tolerated(0.06) benign(0.029) TCGA-97-7941-01 16 67864961 67864961 A G CENPT Intron 0.18 TCGA-97-7941-01 17 10295215 10295215 C A MYH8 Missense_Mutation p.R1883I 0.24 deleterious(0) probably_damaging(0.988) TCGA-97-7941-01 17 12620700 12620700 G T MYOCD Missense_Mutation p.C72F 0.17 tolerated(0.06) benign(0.169) TCGA-97-7941-01 17 16723379 16723379 C A AC022596.6 RNA 0.11 TCGA-97-7941-01 17 47038312 47038312 G A GIP Missense_Mutation p.R130W 0.15 deleterious(0) possibly_damaging(0.846) TCGA-97-7941-01 17 78319618 78319618 A G RNF213 Missense_Mutation p.I2495V 0.17 benign(0.009) TCGA-97-7941-01 18 48593406 48593406 G T SMAD4 Missense_Mutation p.G386V 0.20 deleterious(0) probably_damaging(1) TCGA-97-7941-01 19 23328736 23328736 C G ZNF730 Nonsense_Mutation p.S297* 0.07 TCGA-97-7941-01 19 41349784 41349784 G T CYP2A6 Missense_Mutation p.P468T 0.08 benign(0.012) TCGA-97-7941-01 19 43920682 43920682 G T TEX101 Missense_Mutation p.Q140H 0.16 tolerated(0.12) benign(0.049) TCGA-97-7941-01 19 46319250 46319250 C A SYMPK Silent p.P1182P 0.25 TCGA-97-7941-01 19 48342874 48342874 C A CRX Missense_Mutation p.P184T 0.16 tolerated(0.47) benign(0.042) TCGA-97-7941-01 19 52954848 52954848 C A ZNF578 5'Flank 0.21 TCGA-97-7941-01 19 57967782 57967782 C T VN1R1 Missense_Mutation p.D25N 0.09 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-97-7941-01 19 8002966 8002966 G A TIMM44 Silent p.D86D 0.03 TCGA-97-7941-01 1 116675911 116675911 C A MAB21L3 Silent p.T338T 0.04 TCGA-97-7941-01 1 12855993 12855993 G A PRAMEF1 Missense_Mutation p.V425I 0.11 tolerated(0.13) benign(0.352) TCGA-97-7941-01 1 155264336 155264336 A G PKLR Missense_Mutation p.L301P 0.15 deleterious(0) probably_damaging(1) TCGA-97-7941-01 1 16258564 16258564 G A SPEN Silent p.A1943A 0.15 TCGA-97-7941-01 1 203186013 203186013 C T CHIT1 3'UTR 0.05 TCGA-97-7941-01 1 207642509 207642509 G A CR2 Missense_Mutation p.G250D 0.17 deleterious(0) probably_damaging(0.997) TCGA-97-7941-01 1 220088985 220088985 G T SLC30A10 Missense_Mutation p.L422M 0.19 deleterious(0.02) possibly_damaging(0.505) TCGA-97-7941-01 1 222860943 222860943 G A AIDA Missense_Mutation p.P116L 0.10 deleterious(0.03) benign(0.001) TCGA-97-7941-01 1 247014516 247014516 C A AHCTF1 Missense_Mutation p.G1607C 0.23 deleterious(0) probably_damaging(0.999) TCGA-97-7941-01 1 65895546 65895546 G T LEPROT Missense_Mutation p.V32F 0.18 deleterious(0.05) possibly_damaging(0.808) TCGA-97-7941-01 20 20172016 20172016 G A C20orf26 Missense_Mutation p.E515K 0.16 deleterious(0.05) possibly_damaging(0.597) TCGA-97-7941-01 20 35769666 35769666 T C MROH8 Missense_Mutation p.T490A 0.36 tolerated(1) benign(0.297) TCGA-97-7941-01 20 3651739 3651739 G A ADAM33 Silent p.A718A 0.27 TCGA-97-7941-01 20 42965731 42965731 G T R3HDML 5'UTR 0.14 TCGA-97-7941-01 20 60504878 60504878 C T CDH4 Silent p.L739L 0.23 TCGA-97-7941-01 20 61429996 61429996 G C MRGBP Missense_Mutation p.E110Q 0.09 deleterious(0.02) probably_damaging(0.992) TCGA-97-7941-01 21 33684278 33684278 G A MRAP Missense_Mutation p.G164R 0.19 tolerated_low_confidence(0.25) possibly_damaging(0.876) TCGA-97-7941-01 2 109347334 109347334 G A RANBP2 Missense_Mutation p.C82Y 0.14 deleterious(0) benign(0.083) TCGA-97-7941-01 2 166900521 166900521 C T SCN1A Silent p.R567R 0.21 TCGA-97-7941-01 2 172809485 172809485 C T HAT1 Missense_Mutation p.A92V 0.04 deleterious(0.05) benign(0.01) TCGA-97-7941-01 2 178098809 178098809 T A NFE2L2 Missense_Mutation p.E79V 0.18 deleterious(0) probably_damaging(1) TCGA-97-7941-01 2 179456035 179456035 C T TTN Silent p.K20139K 0.03 TCGA-97-7941-01 2 202093849 202093849 G A CASP10 3'UTR 0.08 TCGA-97-7941-01 2 216296671 216296671 C A FN1 Silent p.G144G 0.17 TCGA-97-7941-01 2 228856017 228856017 G A SPHKAP Missense_Mutation p.L1583F 0.08 tolerated(0.09) benign(0.111) TCGA-97-7941-01 2 26802362 26802362 G T C2orf70 3'UTR 0.26 TCGA-97-7941-01 2 27704107 27704107 C A IFT172 Silent p.P197P 0.15 TCGA-97-7941-01 2 45774718 45774718 T A SRBD1 Missense_Mutation p.H570L 0.17 deleterious(0) possibly_damaging(0.885) TCGA-97-7941-01 2 45774723 45774723 G A SRBD1 Silent p.Y568Y 0.16 TCGA-97-7941-01 2 74699360 74699360 A T MRPL53 Silent p.I75I 0.16 TCGA-97-7941-01 2 90212092 90212092 C T IGKV3D-11 Nonsense_Mutation p.Q62* 0.15 TCGA-97-7941-01 2 95766248 95766248 G A MRPS5 Missense_Mutation p.T301M 0.05 deleterious(0.03) possibly_damaging(0.802) TCGA-97-7941-01 3 38763897 38763897 A T SCN10A Missense_Mutation p.I1120N 0.14 deleterious(0.04) benign(0.009) TCGA-97-7941-01 3 46486797 46486797 G T LTF Missense_Mutation p.F496L 0.06 tolerated(0.19) benign(0.003) TCGA-97-7941-01 3 47103738 47103738 G A SETD2 Nonsense_Mutation p.Q2070* 0.15 TCGA-97-7941-01 3 47158197 47158197 C G SETD2 Missense_Mutation p.C1501S 0.17 deleterious(0) probably_damaging(0.996) TCGA-97-7941-01 3 50332964 50332964 G T HYAL3 Missense_Mutation p.P24T 0.17 tolerated(0.27) possibly_damaging(0.762) TCGA-97-7941-01 3 51718507 51718507 G T TEX264 Missense_Mutation p.D113Y 0.19 deleterious(0.01) benign(0.207) TCGA-97-7941-01 3 54919551 54919551 G A CACNA2D3 Missense_Mutation p.R665H 0.23 deleterious(0.01) benign(0.006) TCGA-97-7941-01 4 162376268 162376268 C - FSTL5 Frame_Shift_Del p.A577Pfs*37 0.15 TCGA-97-7941-01 4 170913125 170913125 T A MFAP3L Missense_Mutation p.T212S 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-97-7941-01 4 177648996 177648996 C A VEGFC Missense_Mutation p.G163V 0.14 deleterious(0) probably_damaging(0.999) TCGA-97-7941-01 4 4322915 4322915 G T ZBTB49 Missense_Mutation p.G724C 0.13 deleterious(0.02) possibly_damaging(0.528) TCGA-97-7941-01 4 56316293 56316305 CTTGAACTCCGAG - CLOCK Frame_Shift_Del p.S434* 0.12 TCGA-97-7941-01 4 71824700 71824700 C T MOB1B Missense_Mutation p.R47W 0.27 deleterious(0) probably_damaging(0.989) TCGA-97-7941-01 4 96140183 96140183 G T UNC5C Missense_Mutation p.P528T 0.10 tolerated(0.2) possibly_damaging(0.842) TCGA-97-7941-01 5 132232334 132232334 G A AFF4 Missense_Mutation p.S663L 0.21 tolerated(0.13) probably_damaging(0.985) TCGA-97-7941-01 5 140480999 140480999 C T PCDHB3 Missense_Mutation p.P256S 0.08 tolerated_low_confidence(0.09) benign(0.071) TCGA-97-7941-01 5 140563505 140563505 C A PCDHB16 Silent p.T457T 0.15 TCGA-97-7941-01 5 140594640 140594640 C A PCDHB13 Silent p.S315S 0.10 TCGA-97-7941-01 5 150920132 150920132 G T FAT2 Nonsense_Mutation p.S3012* 0.12 TCGA-97-7941-01 5 158743806 158743806 C A IL12B Missense_Mutation p.D292Y 0.15 deleterious(0) probably_damaging(0.92) TCGA-97-7941-01 5 35793372 35793372 G C SPEF2 Missense_Mutation p.E1556Q 0.14 tolerated(0.2) benign(0.155) TCGA-97-7941-01 6 116264242 116264242 A G FRK Missense_Mutation p.V416A 0.08 deleterious(0) probably_damaging(1) TCGA-97-7941-01 6 129723466 129723466 C G LAMA2 Intron 0.09 TCGA-97-7941-01 6 146351216 146351216 C A GRM1 Missense_Mutation p.T188K 0.05 deleterious(0) probably_damaging(0.99) TCGA-97-7941-01 6 149944338 149944338 G A KATNA1 Silent p.V134V 0.07 TCGA-97-7941-01 6 26598733 26598733 C T ABT1 Missense_Mutation p.R227W 0.14 deleterious(0) probably_damaging(0.977) TCGA-97-7941-01 6 74073285 74073285 G C KHDC3L Missense_Mutation p.G119A 0.12 tolerated(0.72) benign(0.115) TCGA-97-7941-01 7 103138348 103138348 C T RELN Missense_Mutation p.G2957S 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-97-7941-01 7 142231664 142231664 C A TRBV10-1 Missense_Mutation p.V85F 0.14 deleterious(0.01) probably_damaging(0.991) TCGA-97-7941-01 7 16744259 16744259 A G BZW2 Missense_Mutation p.K399R 0.23 tolerated(0.08) probably_damaging(0.933) TCGA-97-7941-01 7 72849738 72849738 C A FZD9 Silent p.V467V 0.19 TCGA-97-7941-01 7 72988330 72988330 G A TBL2 Silent p.R128R 0.17 TCGA-97-7941-01 7 80374432 80374432 G A SEMA3C Silent p.T678T 0.20 TCGA-97-7941-01 7 95625311 95625311 G T DYNC1I1 Nonsense_Mutation p.E316* 0.05 TCGA-97-7941-01 8 27289812 27289812 C T PTK2B Silent p.S307S 0.11 TCGA-97-7941-01 8 27823930 27823930 C G SCARA5 Splice_Site p.X81_splice 0.22 TCGA-97-7941-01 8 41792359 41792359 G A KAT6A Missense_Mutation p.L1127F 0.07 benign(0.008) TCGA-97-7941-01 9 139877972 139877972 C A LCNL1 5'UTR 0.33 TCGA-97-7941-01 9 140953545 140953545 C T CACNA1B Silent p.P1496P 0.15 TCGA-97-7941-01 9 5054630 5054630 C T JAK2 Nonsense_Mutation p.R228* 0.09 TCGA-97-7941-01 9 74360430 74360430 G T TMEM2 Missense_Mutation p.L180M 0.13 deleterious(0) probably_damaging(0.981) TCGA-97-7941-01 X 117707926 117707926 C A DOCK11 Nonsense_Mutation p.S445* 0.22 TCGA-97-7941-01 X 18275064 18275064 G A SCML2 Missense_Mutation p.H454Y 0.05 deleterious(0) probably_damaging(0.952) TCGA-97-7941-01 X 34962077 34962077 C A FAM47B Missense_Mutation p.P377T 0.24 tolerated(0.37) probably_damaging(0.976) TCGA-97-7941-01 X 49066186 49066186 G A CACNA1F Missense_Mutation p.T1586I 0.16 deleterious(0.01) probably_damaging(0.975) TCGA-97-7941-01 X 49962221 49962221 G T AKAP4 Missense_Mutation p.L50M 0.11 deleterious(0.01) possibly_damaging(0.851) TCGA-97-7941-01 X 83372087 83372087 C A RPS6KA6 Missense_Mutation p.R310S 0.25 deleterious(0.01) probably_damaging(0.985) TCGA-97-8171-01 10 108466321 108466321 C T SORCS1 Silent p.P405P 0.32 TCGA-97-8171-01 10 115804661 115804661 A T ADRB1 Missense_Mutation p.K257M 0.29 deleterious(0) probably_damaging(0.999) TCGA-97-8171-01 11 6432183 6432183 A G APBB1 Missense_Mutation p.L132P 0.46 tolerated(0.1) benign(0.102) TCGA-97-8171-01 11 64326680 64326680 G A SLC22A11 Missense_Mutation p.G156D 0.42 deleterious(0) probably_damaging(0.999) TCGA-97-8171-01 11 70335437 70335437 T C SHANK2 Silent p.L857L 0.35 TCGA-97-8171-01 12 2786939 2786939 G A CACNA1C Missense_Mutation p.R1714Q 0.10 deleterious(0.02) possibly_damaging(0.709) TCGA-97-8171-01 12 419030 419030 T A KDM5A Missense_Mutation p.D1106V 0.41 tolerated(0.09) benign(0.244) TCGA-97-8171-01 12 54403335 54403335 T C HOXC8 Silent p.Y89Y 0.46 TCGA-97-8171-01 13 113772841 113772841 G A F7 Missense_Mutation p.R307H 0.50 tolerated(0.09) benign(0.136) TCGA-97-8171-01 14 103598058 103598058 G A TNFAIP2 Missense_Mutation p.G461S 0.27 tolerated(0.09) possibly_damaging(0.668) TCGA-97-8171-01 14 23235926 23235926 A G OXA1L Missense_Mutation p.M66V 0.03 tolerated_low_confidence(0.32) benign(0.003) TCGA-97-8171-01 14 37641587 37641587 T C SLC25A21-AS1 5'UTR 0.28 TCGA-97-8171-01 14 70634539 70634539 G A SLC8A3 Nonsense_Mutation p.R201* 0.38 TCGA-97-8171-01 14 92909807 92909807 G A SLC24A4 Missense_Mutation p.V216M 0.31 tolerated(0.06) possibly_damaging(0.879) TCGA-97-8171-01 15 83328462 83328462 C A AP3B2 Missense_Mutation p.R1033S 0.42 deleterious(0) benign(0.227) TCGA-97-8171-01 16 23847490 23847490 G T PRKCB 5'UTR 0.53 TCGA-97-8171-01 16 49525207 49525207 C T ZNF423 Silent p.T1278T 0.89 TCGA-97-8171-01 16 55886820 55886820 C A CES5A Missense_Mutation p.A445S 0.86 tolerated(0.43) benign(0.257) TCGA-97-8171-01 16 816150 816150 G A MSLN Silent p.A329A 0.44 TCGA-97-8171-01 17 16593986 16593986 G A CCDC144A Missense_Mutation p.G91D 0.39 deleterious_low_confidence(0.03) probably_damaging(0.981) TCGA-97-8171-01 17 40716080 40716080 C T COASY Missense_Mutation p.P297S 0.09 deleterious(0.03) benign(0.151) TCGA-97-8171-01 17 7834411 7834411 G A TRAPPC1 Missense_Mutation p.T76M 0.40 deleterious(0) probably_damaging(0.94) TCGA-97-8171-01 18 19761486 19761486 G A GATA6 Missense_Mutation p.A459T 0.07 tolerated(0.06) possibly_damaging(0.547) TCGA-97-8171-01 18 28991109 28991109 A T DSG4 Missense_Mutation p.T704S 0.41 tolerated(0.25) unknown(0) TCGA-97-8171-01 18 3879304 3879304 G A DLGAP1 Silent p.N255N 0.06 TCGA-97-8171-01 19 38573083 38573083 G T SIPA1L3 Missense_Mutation p.G293V 0.73 deleterious(0.02) benign(0.069) TCGA-97-8171-01 19 43763263 43763263 G A PSG9 Missense_Mutation p.T245I 0.04 deleterious(0.04) benign(0.073) TCGA-97-8171-01 19 4852119 4852119 C T PLIN3 Silent p.L181L 0.80 TCGA-97-8171-01 19 7975184 7975184 G T MAP2K7 Nonsense_Mutation p.E125* 0.67 TCGA-97-8171-01 19 9213835 9213835 T C OR7G2 Missense_Mutation p.S50G 0.06 tolerated(0.64) benign(0.011) TCGA-97-8171-01 1 154548481 154548481 C T CHRNB2 3'UTR 0.23 TCGA-97-8171-01 1 157557294 157557294 A T FCRL4 Missense_Mutation p.S207T 0.22 tolerated(0.45) possibly_damaging(0.87) TCGA-97-8171-01 1 36934779 36934779 G C CSF3R Silent p.V518V 0.21 TCGA-97-8171-01 1 52850385 52850385 T A ORC1 Missense_Mutation p.Y531F 0.63 deleterious(0.01) probably_damaging(0.971) TCGA-97-8171-01 22 40425583 40425583 G T FAM83F 3'UTR 0.50 TCGA-97-8171-01 22 41077012 41077012 G A MCHR1 Missense_Mutation p.G117S 0.43 deleterious(0.04) probably_damaging(0.999) TCGA-97-8171-01 22 42997998 42997998 A C POLDIP3 Missense_Mutation p.V172G 0.46 tolerated(0.36) possibly_damaging(0.694) TCGA-97-8171-01 2 109087033 109087033 C T GCC2 Silent p.C416C 0.46 TCGA-97-8171-01 2 149247153 149247153 G A MBD5 Missense_Mutation p.V1085I 0.36 tolerated_low_confidence(0.06) unknown(0) TCGA-97-8171-01 2 239242659 239242659 C T TRAF3IP1 Missense_Mutation p.S349F 0.14 tolerated(0.05) possibly_damaging(0.795) TCGA-97-8171-01 2 98275439 98275439 G T ACTR1B Missense_Mutation p.L115I 0.37 deleterious(0.03) benign(0.276) TCGA-97-8171-01 3 101520088 101520088 C T NXPE3 Missense_Mutation p.H35Y 0.40 tolerated(1) benign(0.153) TCGA-97-8171-01 3 121206448 121206448 G T POLQ Missense_Mutation p.P1777H 0.36 tolerated(0.08) possibly_damaging(0.625) TCGA-97-8171-01 3 140406604 140406604 C T TRIM42 Silent p.I360I 0.38 TCGA-97-8171-01 3 168807868 168807868 A T MECOM Missense_Mutation p.S984R 0.44 tolerated(0.06) benign(0.444) TCGA-97-8171-01 3 179311629 179311629 G - MRPL47 Frame_Shift_Del p.L153* 0.35 TCGA-97-8171-01 3 186915397 186915397 A C RTP1 Missense_Mutation p.T32P 0.48 tolerated_low_confidence(0.3) benign(0) TCGA-97-8171-01 3 41266104 41266104 G T CTNNB1 Missense_Mutation p.G34V 0.48 deleterious(0) probably_damaging(0.998) TCGA-97-8171-01 3 48619140 48619140 C T COL7A1 Missense_Mutation p.R1574Q 0.34 unknown(0) TCGA-97-8171-01 4 37850211 37850211 G T PGM2 Missense_Mutation p.A451S 0.46 tolerated(0.1) possibly_damaging(0.571) TCGA-97-8171-01 4 44177097 44177097 G A KCTD8 Nonsense_Mutation p.Q378* 0.48 TCGA-97-8171-01 5 14711229 14711229 C T ANKH 3'UTR 0.30 TCGA-97-8171-01 5 156819961 156819961 C T CYFIP2 Missense_Mutation p.R1213C 0.43 deleterious(0) probably_damaging(0.931) TCGA-97-8171-01 5 176002375 176002375 C A CDHR2 Missense_Mutation p.P239H 0.31 deleterious(0) probably_damaging(1) TCGA-97-8171-01 5 54460037 54460037 G A GPX8 Silent p.E207E 0.38 TCGA-97-8171-01 6 105726276 105726276 C G PREP Missense_Mutation p.D626H 0.27 tolerated(0.07) benign(0.002) TCGA-97-8171-01 6 129637033 129637033 G A LAMA2 Missense_Mutation p.V1288I 0.04 tolerated(0.24) benign(0.008) TCGA-97-8171-01 6 24146163 24146163 C A NRSN1 Missense_Mutation p.L193M 0.16 tolerated_low_confidence(0.06) benign(0.153) TCGA-97-8171-01 6 31541368 31541368 G A LTA Silent p.A172A 0.23 TCGA-97-8171-01 6 54792354 54792354 G A FAM83B Missense_Mutation p.G220R 0.19 deleterious(0) probably_damaging(1) TCGA-97-8171-01 7 123269106 123269106 C T ASB15 Missense_Mutation p.A353V 0.21 tolerated(0.07) possibly_damaging(0.721) TCGA-97-8171-01 7 55242465 55242479 GGAATTAAGAGAAGC - EGFR In_Frame_Del p.E746_A750del 0.54 TCGA-97-8171-01 7 57194336 57194336 A G ZNF479 Silent p.D43D 0.13 TCGA-97-8171-01 7 6082607 6082607 C A EIF2AK1 Nonsense_Mutation p.E250* 0.29 TCGA-97-8171-01 7 99746599 99746599 G A LAMTOR4 Splice_Site p.X1_splice 0.20 TCGA-97-8171-01 8 113299440 113299440 G A CSMD3 Missense_Mutation p.P3062S 0.61 deleterious(0) benign(0.232) TCGA-97-8171-01 9 103271360 103271360 C T TMEFF1 Missense_Mutation p.A127V 0.40 deleterious(0.02) benign(0.034) TCGA-97-8171-01 9 131767758 131767758 G A NUP188 Silent p.L1562L 0.47 TCGA-97-8171-01 X 65412112 65412112 A G HEPH Missense_Mutation p.T456A 0.83 deleterious(0.01) possibly_damaging(0.476) TCGA-97-8172-01 10 115383322 115383322 A T NRAP Missense_Mutation p.L808Q 0.14 tolerated(0.18) benign(0.133) TCGA-97-8172-01 10 117045857 117045857 T A ATRNL1 Missense_Mutation p.S789T 0.21 tolerated(0.79) benign(0.012) TCGA-97-8172-01 10 12123522 12123522 A T DHTKD1 Missense_Mutation p.K69I 0.22 deleterious(0) possibly_damaging(0.749) TCGA-97-8172-01 10 26463097 26463097 G T MYO3A Nonsense_Mutation p.E1302* 0.14 TCGA-97-8172-01 10 27329008 27329008 T A ANKRD26 Missense_Mutation p.K754I 0.23 deleterious(0.01) probably_damaging(0.954) TCGA-97-8172-01 10 27536617 27536617 C T RP11-85G18.6 Intron 0.09 TCGA-97-8172-01 10 35896712 35896712 G A GJD4 Missense_Mutation p.V91I 0.33 tolerated(0.21) benign(0.252) TCGA-97-8172-01 10 45652518 45652518 G C RP11-445N18.7 RNA 0.26 TCGA-97-8172-01 10 49365238 49365238 T G FRMPD2 3'UTR 0.22 TCGA-97-8172-01 10 51579259 51579259 C T NCOA4 Nonsense_Mutation p.Q56* 0.09 TCGA-97-8172-01 10 56106150 56106150 A G PCDH15 Missense_Mutation p.V190A 0.25 tolerated(0.38) benign(0.02) TCGA-97-8172-01 10 85997412 85997412 G T LRIT1 Silent p.T51T 0.21 TCGA-97-8172-01 10 93863 93863 C A TUBB8 Nonsense_Mutation p.E157* 0.12 TCGA-97-8172-01 10 99327766 99327766 G T UBTD1 Missense_Mutation p.D56Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-97-8172-01 11 106558446 106558446 C A GUCY1A2 Silent p.P707P 0.23 TCGA-97-8172-01 11 121440977 121440977 G C SORL1 Missense_Mutation p.C1112S 0.27 deleterious_low_confidence(0) possibly_damaging(0.751) TCGA-97-8172-01 11 1216379 1216379 C T MUC5AC RNA 0.18 TCGA-97-8172-01 11 123900489 123900489 C T OR10G8 Missense_Mutation p.H54Y 0.20 deleterious(0.01) possibly_damaging(0.904) TCGA-97-8172-01 11 18731206 18731206 A T IGSF22 Missense_Mutation p.L909Q 0.24 deleterious(0.04) probably_damaging(0.983) TCGA-97-8172-01 11 20122531 20122531 C T NAV2 Missense_Mutation p.P2136L 0.32 deleterious(0) probably_damaging(0.997) TCGA-97-8172-01 11 21596620 21596620 G T NELL1 3'UTR 0.28 TCGA-97-8172-01 11 2189762 2189762 C A TH Missense_Mutation p.R180L 0.18 deleterious(0.03) benign(0.253) TCGA-97-8172-01 11 34670626 34670627 - TG EHF Frame_Shift_Ins p.E158Vfs*6 0.13 TCGA-97-8172-01 11 35456353 35456353 C T PAMR1 Splice_Site p.X462_splice 0.17 TCGA-97-8172-01 11 376447 376447 G T B4GALNT4 Nonsense_Mutation p.E442* 0.23 TCGA-97-8172-01 11 3789902 3789902 C A NUP98 Missense_Mutation p.S286I 0.20 deleterious(0.04) possibly_damaging(0.742) TCGA-97-8172-01 11 3789935 3789935 C - NUP98 Frame_Shift_Del p.G275Afs*34 0.16 TCGA-97-8172-01 11 46407071 46407071 G A CHRM4 Missense_Mutation p.T346M 0.04 deleterious(0.04) probably_damaging(0.998) TCGA-97-8172-01 11 4936312 4936312 A T OR51G2 Nonsense_Mutation p.C194* 0.18 TCGA-97-8172-01 11 50003266 50003266 G T OR4C12 Missense_Mutation p.R258S 0.28 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-97-8172-01 11 5510397 5510397 G A OR52D1 Missense_Mutation p.R154H 0.25 deleterious(0.01) probably_damaging(0.953) TCGA-97-8172-01 11 55136245 55136245 G T OR4A15 Missense_Mutation p.D296Y 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-97-8172-01 11 55798776 55798776 C A OR5AS1 Missense_Mutation p.N294K 0.26 deleterious(0) probably_damaging(0.998) TCGA-97-8172-01 11 5862660 5862660 G C OR52E6 Nonsense_Mutation p.Y156* 0.21 TCGA-97-8172-01 11 61017165 61017165 C T PGA5 Silent p.I266I 0.10 TCGA-97-8172-01 11 61249346 61249346 C T PPP1R32 Missense_Mutation p.T22M 0.23 tolerated(0.09) benign(0.157) TCGA-97-8172-01 11 61254046 61254046 C A PPP1R32 Silent p.A266A 0.12 TCGA-97-8172-01 11 62521622 62521622 G T ZBTB3 5'UTR 0.26 TCGA-97-8172-01 11 6942452 6942452 C A OR2D3 Missense_Mutation p.P74T 0.18 deleterious(0) probably_damaging(0.987) TCGA-97-8172-01 11 89028405 89028405 C A TYR Silent p.V487V 0.21 TCGA-97-8172-01 11 92616357 92616357 C A FAT3 Silent p.S4245S 0.15 TCGA-97-8172-01 11 94169023 94169023 G T MRE11A Missense_Mutation p.P657T 0.17 tolerated_low_confidence(0.25) benign(0.002) TCGA-97-8172-01 12 100200323 100200323 C A ANKS1B Silent p.V176V 0.20 TCGA-97-8172-01 12 101723228 101723228 G A UTP20 Splice_Site p.X1139_splice 0.25 TCGA-97-8172-01 12 105322120 105322120 G A SLC41A2 Silent p.N62N 0.21 TCGA-97-8172-01 12 124158242 124158242 C A TCTN2 Silent p.S116S 0.19 TCGA-97-8172-01 12 124798907 124798907 C G FAM101A Missense_Mutation p.R82G 0.32 deleterious(0.01) benign(0.328) TCGA-97-8172-01 12 20893283 20893283 G A SLCO1C1 Missense_Mutation p.G572R 0.29 deleterious(0) probably_damaging(0.985) TCGA-97-8172-01 12 26640067 26640068 - G ITPR2 Frame_Shift_Ins p.I1830Hfs*5 0.20 TCGA-97-8172-01 12 27841317 27841317 G T PPFIBP1 Silent p.A825A 0.17 TCGA-97-8172-01 12 28544322 28544322 G A CCDC91 Missense_Mutation p.C247Y 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-97-8172-01 12 33579319 33579319 G A SYT10 Missense_Mutation p.P88L 0.32 tolerated(0.44) benign(0.001) TCGA-97-8172-01 12 41587940 41587940 G A PDZRN4 Missense_Mutation p.G265R 0.23 deleterious(0) probably_damaging(0.999) TCGA-97-8172-01 12 42481711 42481711 T A GXYLT1 Missense_Mutation p.K400N 0.16 tolerated(0.52) benign(0.001) TCGA-97-8172-01 12 48371820 48371820 C A COL2A1 Silent p.T1028T 0.41 TCGA-97-8172-01 12 49934881 49934881 G T KCNH3 Missense_Mutation p.E92D 0.12 deleterious(0.01) probably_damaging(0.989) TCGA-97-8172-01 12 53189302 53189302 G T KRT3 Silent p.I175I 0.21 TCGA-97-8172-01 12 57601998 57601998 G T LRP1 Missense_Mutation p.G4013W 0.26 probably_damaging(0.998) TCGA-97-8172-01 12 64458908 64458908 T C SRGAP1 Missense_Mutation p.V345A 0.19 deleterious(0) benign(0.103) TCGA-97-8172-01 12 7288872 7288872 G A CLSTN3 Silent p.E271E 0.20 TCGA-97-8172-01 12 81102768 81102768 G A MYF6 3'UTR 0.08 TCGA-97-8172-01 12 9322071 9322071 A G PZP Silent p.Y652Y 0.26 TCGA-97-8172-01 12 94634358 94634358 G A PLXNC1 Missense_Mutation p.G740R 0.22 tolerated(0.22) benign(0.38) TCGA-97-8172-01 13 100617835 100617835 G A ZIC5 Silent p.G596G 0.10 TCGA-97-8172-01 13 113679026 113679026 G T MCF2L Missense_Mutation p.D78Y 0.24 deleterious(0.01) possibly_damaging(0.888) TCGA-97-8172-01 13 32911850 32911850 G T BRCA2 Nonsense_Mutation p.E1120* 0.21 TCGA-97-8172-01 13 49030418 49030418 A T RB1 Missense_Mutation p.Q631H 0.14 tolerated(0.09) possibly_damaging(0.663) TCGA-97-8172-01 14 103804248 103804248 A G EIF5 Intron 0.14 TCGA-97-8172-01 14 20917174 20917174 T C OSGEP Splice_Site p.X170_splice 0.20 TCGA-97-8172-01 14 47426642 47426642 T C MDGA2 Missense_Mutation p.Y675C 0.25 tolerated(0.15) possibly_damaging(0.843) TCGA-97-8172-01 14 52734827 52734827 G A PTGDR Missense_Mutation p.A99T 0.12 tolerated(0.25) benign(0.02) TCGA-97-8172-01 14 53118989 53118990 - A ERO1L Frame_Shift_Ins p.A365Cfs*4 0.10 TCGA-97-8172-01 14 57960349 57960349 C A C14orf105 Missense_Mutation p.G29C 0.37 tolerated(0.39) benign(0.045) TCGA-97-8172-01 14 65032158 65032158 T A PPP1R36 Missense_Mutation p.L118Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-97-8172-01 14 81743347 81743347 C A STON2 Missense_Mutation p.G770C 0.21 deleterious(0.01) probably_damaging(1) TCGA-97-8172-01 14 94527333 94527333 C A DDX24 Silent p.V441V 0.16 TCGA-97-8172-01 15 101561313 101561313 G T LRRK1 Silent p.L555L 0.25 TCGA-97-8172-01 15 22369263 22369263 G T OR4M2 Missense_Mutation p.G230C 0.14 tolerated(0.12) possibly_damaging(0.872) TCGA-97-8172-01 15 24923827 24923827 G T NPAP1 Missense_Mutation p.G938V 0.12 deleterious(0.01) probably_damaging(0.991) TCGA-97-8172-01 15 31294564 31294564 G A TRPM1 Missense_Mutation p.P1464S 0.14 deleterious_low_confidence(0.04) benign(0.178) TCGA-97-8172-01 15 41275985 41275985 T A INO80 Silent p.T1404T 0.20 TCGA-97-8172-01 15 63084882 63084882 G T TLN2 Missense_Mutation p.G1927C 0.12 deleterious(0.02) probably_damaging(0.959) TCGA-97-8172-01 15 74032484 74032485 GG - C15orf59 Frame_Shift_Del p.P219* 0.27 TCGA-97-8172-01 15 83698921 83698921 C A BTBD1 Missense_Mutation p.R341L 0.15 deleterious(0) probably_damaging(0.969) TCGA-97-8172-01 15 86125278 86125278 G T AKAP13 Missense_Mutation p.A1327S 0.12 tolerated_low_confidence(0.13) benign(0.382) TCGA-97-8172-01 15 86807974 86807974 G T AGBL1 Silent p.V478V 0.23 TCGA-97-8172-01 15 88678509 88678509 G A NTRK3 Missense_Mutation p.R343W 0.12 deleterious(0.01) possibly_damaging(0.848) TCGA-97-8172-01 16 1550635 1550635 G T TELO2 Missense_Mutation p.G406C 0.28 deleterious(0) probably_damaging(1) TCGA-97-8172-01 16 2223814 2223814 G T TRAF7 Missense_Mutation p.R371L 0.27 deleterious(0.04) benign(0.045) TCGA-97-8172-01 16 31230629 31230629 G - TRIM72 Frame_Shift_Del p.A171Pfs*42 0.30 TCGA-97-8172-01 16 31471247 31471247 C A ARMC5 Missense_Mutation p.S134R 0.33 deleterious(0) probably_damaging(0.999) TCGA-97-8172-01 16 71692263 71692263 C T PHLPP2 Missense_Mutation p.V718I 0.30 tolerated(0.09) probably_damaging(0.994) TCGA-97-8172-01 16 76509927 76509927 G C CNTNAP4 Missense_Mutation p.A510P 0.19 deleterious(0.01) possibly_damaging(0.905) TCGA-97-8172-01 16 81279173 81279173 G T BCMO1 Missense_Mutation p.G53V 0.18 deleterious(0) probably_damaging(1) TCGA-97-8172-01 16 823189 823189 G T MSLNL Silent p.T693T 0.32 TCGA-97-8172-01 16 823190 823190 G T MSLNL Missense_Mutation p.T693N 0.32 benign(0.225) TCGA-97-8172-01 16 83999435 83999435 G T OSGIN1 Silent p.P419P 0.16 TCGA-97-8172-01 16 8862089 8862089 G A ABAT Missense_Mutation p.G215S 0.26 deleterious(0) benign(0.423) TCGA-97-8172-01 17 10309685 10309685 G C MYH8 Missense_Mutation p.P734R 0.13 deleterious(0) probably_damaging(1) TCGA-97-8172-01 17 10411688 10411688 G T MYH1 Missense_Mutation p.A630E 0.14 tolerated(0.17) benign(0.195) TCGA-97-8172-01 17 11572813 11572813 G A DNAH9 Missense_Mutation p.E1019K 0.20 benign(0.024) TCGA-97-8172-01 17 11593398 11593398 T C DNAH9 Missense_Mutation p.V1420A 0.26 probably_damaging(0.971) TCGA-97-8172-01 17 11597656 11597656 G T DNAH9 Missense_Mutation p.K1588N 0.23 probably_damaging(0.998) TCGA-97-8172-01 17 11894342 11894342 C - ZNF18 Frame_Shift_Del p.E176Sfs*3 0.21 TCGA-97-8172-01 17 20354812 20354812 G T LGALS9B Silent p.V301V 0.23 TCGA-97-8172-01 17 28418935 28418935 C - EFCAB5 Frame_Shift_Del p.R1329Efs*30 0.16 TCGA-97-8172-01 17 38296959 38296959 G A CASC3 Missense_Mutation p.G53E 0.56 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-97-8172-01 17 38636077 38636077 G A TNS4 Silent p.L587L 0.29 TCGA-97-8172-01 17 43482394 43482394 C G ARHGAP27 Missense_Mutation p.G41R 0.25 tolerated(0.1) benign(0.007) TCGA-97-8172-01 17 5118220 5118220 A G SCIMP Missense_Mutation p.S95P 0.20 tolerated(0.17) possibly_damaging(0.648) TCGA-97-8172-01 17 51901019 51901019 C A KIF2B Missense_Mutation p.P209T 0.25 tolerated(0.07) benign(0.002) TCGA-97-8172-01 17 56679796 56679796 G C TEX14 Missense_Mutation p.Q504E 0.08 deleterious(0) probably_damaging(0.999) TCGA-97-8172-01 17 59760758 59760758 A C BRIP1 Missense_Mutation p.W1217G 0.06 tolerated_low_confidence(0.34) benign(0) TCGA-97-8172-01 17 67521099 67521099 T A MAP2K6 Missense_Mutation p.W241R 0.08 deleterious(0) probably_damaging(0.993) TCGA-97-8172-01 17 7323954 7323954 C T SPEM1 Silent p.S51S 0.16 TCGA-97-8172-01 17 73851428 73851428 C G WBP2 5'UTR 0.25 TCGA-97-8172-01 17 7579312 7579312 C T TP53 Silent p.T125T 0.08 TCGA-97-8172-01 17 8702249 8702249 G A MFSD6L Missense_Mutation p.P64S 0.22 deleterious(0) probably_damaging(1) TCGA-97-8172-01 17 9792737 9792737 C G GLP2R Missense_Mutation p.H459Q 0.19 tolerated(0.06) benign(0.288) TCGA-97-8172-01 18 22806823 22806823 G T ZNF521 Silent p.S353S 0.32 TCGA-97-8172-01 18 40323369 40323369 T C RIT2 3'UTR 0.19 TCGA-97-8172-01 18 5395685 5395685 C A EPB41L3 Nonsense_Mutation p.E999* 0.25 TCGA-97-8172-01 18 60243863 60243863 G A ZCCHC2 3'UTR 0.17 TCGA-97-8172-01 19 11942791 11942791 G T ZNF440 Missense_Mutation p.S267I 0.29 tolerated(0.37) possibly_damaging(0.9) TCGA-97-8172-01 19 12760825 12760825 G A MAN2B1 Silent p.D723D 0.17 TCGA-97-8172-01 19 17452006 17452006 G T GTPBP3 Silent p.S408S 0.10 TCGA-97-8172-01 19 19790026 19790026 G T ZNF101 Silent p.G76G 0.17 TCGA-97-8172-01 19 35758461 35758461 A T LSR Missense_Mutation p.R580W 0.37 deleterious(0) possibly_damaging(0.885) TCGA-97-8172-01 19 36145513 36145513 C T COX6B1 Silent p.G49G 0.07 TCGA-97-8172-01 19 38964183 38964183 C A RYR1 Missense_Mutation p.P1311H 0.30 possibly_damaging(0.492) TCGA-97-8172-01 19 39909557 39909557 G T PLEKHG2 Missense_Mutation p.A393S 0.19 deleterious_low_confidence(0.01) benign(0.41) TCGA-97-8172-01 19 42880503 42880503 C T MEGF8 Missense_Mutation p.P2638L 0.32 deleterious(0.03) benign(0.434) TCGA-97-8172-01 19 4290578 4290578 A T SHD Missense_Mutation p.Q324L 0.14 deleterious(0) possibly_damaging(0.517) TCGA-97-8172-01 19 46543020 46543020 A T IGFL4 3'UTR 0.22 TCGA-97-8172-01 19 47422306 47422306 T C ARHGAP35 Missense_Mutation p.L125P 0.09 deleterious(0) probably_damaging(0.994) TCGA-97-8172-01 19 50150037 50150037 C A SCAF1 Missense_Mutation p.P143H 0.30 unknown(0) TCGA-97-8172-01 19 50764766 50764766 G T MYH14 Missense_Mutation p.R820L 0.23 deleterious(0) probably_damaging(0.998) TCGA-97-8172-01 19 52569216 52569216 A G ZNF841 Missense_Mutation p.L640P 0.15 deleterious(0) probably_damaging(1) TCGA-97-8172-01 19 54803978 54803978 C A LILRA3 Missense_Mutation p.G12V 0.30 deleterious(0) possibly_damaging(0.883) TCGA-97-8172-01 19 5831558 5831558 A T FUT6 Missense_Mutation p.W341R 0.21 tolerated(0.84) benign(0.042) TCGA-97-8172-01 19 6422371 6422371 T C KHSRP Missense_Mutation p.K109R 0.23 deleterious(0) probably_damaging(0.98) TCGA-97-8172-01 19 8997162 8997162 G T MUC16 Silent p.T13678T 0.17 TCGA-97-8172-01 19 9090916 9090916 A T MUC16 Missense_Mutation p.I300K 0.14 unknown(0) TCGA-97-8172-01 1 10502340 10502340 A C APITD1 Intron 0.14 TCGA-97-8172-01 1 110085739 110085739 C T GPR61 Missense_Mutation p.P32L 0.10 tolerated(0.15) benign(0.001) TCGA-97-8172-01 1 119929334 119929334 G T HAO2 Missense_Mutation p.L217F 0.14 deleterious(0) probably_damaging(0.999) TCGA-97-8172-01 1 149898367 149898367 G A SF3B4 Nonsense_Mutation p.Q203* 0.41 TCGA-97-8172-01 1 152732427 152732427 G T KPRP Missense_Mutation p.Q121H 0.11 tolerated(0.05) benign(0.18) TCGA-97-8172-01 1 156437799 156437799 G A MEF2D Missense_Mutation p.R514W 0.12 deleterious(0) probably_damaging(0.997) TCGA-97-8172-01 1 157514637 157514637 G T FCRL5 Silent p.V181V 0.10 TCGA-97-8172-01 1 158592983 158592983 C A SPTA1 Splice_Site p.X1971_splice 0.39 TCGA-97-8172-01 1 159284290 159284290 G T OR10J3 Missense_Mutation p.H54N 0.14 deleterious(0.03) benign(0.014) TCGA-97-8172-01 1 159409949 159409949 A T OR10J1 Missense_Mutation p.Y134F 0.22 tolerated(0.06) benign(0.443) TCGA-97-8172-01 1 160389029 160389029 G T VANGL2 Missense_Mutation p.A144S 0.08 tolerated(0.5) benign(0.185) TCGA-97-8172-01 1 160851944 160851944 A T ITLN1 Missense_Mutation p.C70S 0.06 deleterious(0) probably_damaging(0.92) TCGA-97-8172-01 1 172411686 172411686 T C PIGC Missense_Mutation p.D26G 0.27 tolerated(0.06) possibly_damaging(0.585) TCGA-97-8172-01 1 176934348 176934348 G A ASTN1 Nonsense_Mutation p.R517* 0.08 TCGA-97-8172-01 1 183907988 183907988 C T COLGALT2 Silent p.R596R 0.30 TCGA-97-8172-01 1 197071289 197071289 G A ASPM Silent p.I2364I 0.09 TCGA-97-8172-01 1 217822286 217822286 G A SPATA17 Missense_Mutation p.R44Q 0.07 deleterious(0) probably_damaging(0.931) TCGA-97-8172-01 1 233152808 233152808 C A PCNXL2 Missense_Mutation p.W1566C 0.31 tolerated(0.07) benign(0.043) TCGA-97-8172-01 1 237947802 237947802 C A RYR2 Missense_Mutation p.L4264M 0.18 benign(0.157) TCGA-97-8172-01 1 241261976 241261976 G T RGS7 Missense_Mutation p.S55R 0.39 deleterious(0) probably_damaging(0.994) TCGA-97-8172-01 1 247320002 247320002 G A ZNF124 Missense_Mutation p.H246Y 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-97-8172-01 1 247769718 247769718 C A OR2G3 Missense_Mutation p.F277L 0.42 tolerated(0.06) possibly_damaging(0.656) TCGA-97-8172-01 1 248059023 248059023 C A OR2W3 Silent p.I45I 0.37 TCGA-97-8172-01 1 248059024 248059024 A T OR2W3 Missense_Mutation p.I46F 0.37 deleterious(0) probably_damaging(0.973) TCGA-97-8172-01 1 28800619 28800619 G T PHACTR4 Silent p.L469L 0.28 TCGA-97-8172-01 1 43812539 43812539 G A MPL Silent p.S414S 0.16 TCGA-97-8172-01 1 61869831 61869831 G T NFIA Missense_Mutation p.Q422H 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-97-8172-01 1 63069642 63069642 G A ANGPTL3 Missense_Mutation p.E312K 0.24 deleterious(0.02) possibly_damaging(0.861) TCGA-97-8172-01 1 67890850 67890850 C T SERBP1 Missense_Mutation p.G174D 0.14 tolerated(0.05) probably_damaging(1) TCGA-97-8172-01 1 68943530 68943530 T C DEPDC1 Silent p.L746L 0.13 TCGA-97-8172-01 1 70504453 70504454 - A LRRC7 Frame_Shift_Ins p.S947Vfs*6 0.20 TCGA-97-8172-01 20 18123229 18123229 G T CSRP2BP 5'UTR 0.18 TCGA-97-8172-01 20 19634777 19634777 C T SLC24A3 Silent p.I228I 0.25 TCGA-97-8172-01 20 23472296 23472296 C A CST8 5'UTR 0.18 TCGA-97-8172-01 20 23472301 23472301 G A CST8 5'UTR 0.18 TCGA-97-8172-01 20 2779519 2779519 G T CPXM1 Silent p.R65R 0.21 TCGA-97-8172-01 20 30730812 30730812 A T TM9SF4 Missense_Mutation p.I186F 0.36 tolerated(0.4) benign(0.056) TCGA-97-8172-01 20 30784959 30784959 T A PLAGL2 Missense_Mutation p.S263C 0.30 tolerated(0.18) possibly_damaging(0.52) TCGA-97-8172-01 20 40102083 40102083 G A CHD6 Missense_Mutation p.P848L 0.21 deleterious(0) possibly_damaging(0.73) TCGA-97-8172-01 20 44986344 44986344 G A SLC35C2 Silent p.S63S 0.29 TCGA-97-8172-01 20 45212243 45212243 C A SLC13A3 Missense_Mutation p.R396M 0.22 tolerated(0.26) probably_damaging(0.943) TCGA-97-8172-01 20 55027050 55027050 C A CASS4 Missense_Mutation p.P273H 0.15 deleterious(0) probably_damaging(0.968) TCGA-97-8172-01 21 36088776 36088776 A C CLIC6 Missense_Mutation p.K686T 0.23 deleterious(0) probably_damaging(0.99) TCGA-97-8172-01 21 45821628 45821628 G C TRPM2 Missense_Mutation p.V796L 0.18 tolerated(0.1) benign(0.251) TCGA-97-8172-01 21 46067011 46067011 C T KRTAP10-11 Silent p.S212S 0.05 TCGA-97-8172-01 21 46078065 46078065 C - KRTAP12-3 Frame_Shift_Del p.V58* 0.15 TCGA-97-8172-01 21 46191316 46191316 G A UBE2G2 Silent p.I158I 0.09 TCGA-97-8172-01 22 18905928 18905928 C T PRODH Missense_Mutation p.R443Q 0.08 deleterious(0) probably_damaging(0.987) TCGA-97-8172-01 22 23055532 23055532 C A IGLV3-21 Silent p.V65V 0.23 TCGA-97-8172-01 22 29879418 29879418 C A NEFH Nonsense_Mutation p.S313* 0.17 TCGA-97-8172-01 22 36960739 36960743 TGGCC - CACNG2 Frame_Shift_Del p.A210Gfs*83 0.19 TCGA-97-8172-01 22 40030583 40030583 G T CACNA1I Silent p.L198L 0.18 TCGA-97-8172-01 22 40161324 40161324 C A ENTHD1 Missense_Mutation p.D375Y 0.19 deleterious(0) possibly_damaging(0.569) TCGA-97-8172-01 22 50521573 50521573 C A MLC1 Silent p.S69S 0.17 TCGA-97-8172-01 22 50903056 50903056 A G SBF1 Missense_Mutation p.W515R 0.27 tolerated(0.51) possibly_damaging(0.509) TCGA-97-8172-01 2 100623643 100623643 C A AFF3 Missense_Mutation p.G177W 0.23 deleterious(0) probably_damaging(0.999) TCGA-97-8172-01 2 107460274 107460274 C A ST6GAL2 Missense_Mutation p.V54L 0.31 benign(0.001) TCGA-97-8172-01 2 121746688 121746688 G T GLI2 Silent p.V1066V 0.16 TCGA-97-8172-01 2 128861575 128861575 A T UGGT1 Silent p.S88S 0.35 TCGA-97-8172-01 2 131521309 131521309 G C AMER3 Missense_Mutation p.G555A 0.47 tolerated(0.08) benign(0.004) TCGA-97-8172-01 2 131521310 131521310 G T AMER3 Silent p.G555G 0.47 TCGA-97-8172-01 2 145157818 145157818 G C ZEB2 Missense_Mutation p.C312W 0.22 deleterious(0) probably_damaging(0.999) TCGA-97-8172-01 2 162891739 162891739 C A DPP4 Nonsense_Mutation p.E237* 0.26 TCGA-97-8172-01 2 168101461 168101461 C A XIRP2 Missense_Mutation p.P1187T 0.28 benign(0.02) TCGA-97-8172-01 2 168107382 168107382 G C XIRP2 Silent p.S3160S 0.15 TCGA-97-8172-01 2 172942581 172942581 T C METAP1D Missense_Mutation p.I254T 0.13 deleterious(0.01) probably_damaging(0.957) TCGA-97-8172-01 2 175436469 175436469 C T WIPF1 Missense_Mutation p.G355D 0.35 deleterious(0.01) probably_damaging(0.994) TCGA-97-8172-01 2 203424500 203424500 G A BMPR2 Missense_Mutation p.R983Q 0.15 tolerated(0.12) benign(0.033) TCGA-97-8172-01 2 20647632 20647632 C T RHOB Nonsense_Mutation p.Q136* 0.12 TCGA-97-8172-01 2 21227226 21227226 G T APOB Missense_Mutation p.A4001E 0.25 benign(0.009) TCGA-97-8172-01 2 219755016 219755016 G T WNT10A Silent p.L229L 0.28 TCGA-97-8172-01 2 220354332 220354332 T A SPEG Missense_Mutation p.S2864R 0.11 benign(0.016) TCGA-97-8172-01 2 228155588 228155588 C T COL4A3 Missense_Mutation p.P1066S 0.39 unknown(0) TCGA-97-8172-01 2 238999980 238999980 G - SCLY Intron 0.14 TCGA-97-8172-01 2 26535931 26535931 C A GPR113 Silent p.L511L 0.19 TCGA-97-8172-01 2 30957344 30957344 G C CAPN13 Missense_Mutation p.S590W 0.27 deleterious(0.03) probably_damaging(0.989) TCGA-97-8172-01 2 32463286 32463286 G A NLRC4 Silent p.V812V 0.19 TCGA-97-8172-01 2 3691316 3691316 G C COLEC11 Splice_Site p.X156_splice 0.33 TCGA-97-8172-01 2 37458805 37458805 A T CEBPZ 5'UTR 0.13 TCGA-97-8172-01 2 60688406 60688406 C T BCL11A Missense_Mutation p.M547I 0.34 tolerated(0.09) benign(0.019) TCGA-97-8172-01 2 79384732 79384732 G T REG3A Missense_Mutation p.S142R 0.28 tolerated(0.06) benign(0.001) TCGA-97-8172-01 2 96049772 96049772 T C KCNIP3 Missense_Mutation p.M249T 0.32 deleterious(0) probably_damaging(0.982) TCGA-97-8172-01 3 114069779 114069779 G - ZBTB20 Frame_Shift_Del p.I383* 0.20 TCGA-97-8172-01 3 114070127 114070127 C A ZBTB20 Silent p.V266V 0.27 TCGA-97-8172-01 3 13896063 13896063 A T WNT7A Missense_Mutation p.L179H 0.25 deleterious(0) probably_damaging(0.997) TCGA-97-8172-01 3 145839019 145839019 T C PLOD2 Missense_Mutation p.E73G 0.36 deleterious(0) benign(0.301) TCGA-97-8172-01 3 150460262 150460262 C A SIAH2 Missense_Mutation p.G214V 0.31 deleterious(0.01) probably_damaging(1) TCGA-97-8172-01 3 183772520 183772520 G T HTR3C Missense_Mutation p.A27S 0.29 tolerated(0.27) benign(0.001) TCGA-97-8172-01 3 27333021 27333021 T G NEK10 Missense_Mutation p.D477A 0.11 deleterious(0.01) probably_damaging(0.967) TCGA-97-8172-01 3 39433404 39433404 G T SLC25A38 Missense_Mutation p.G173W 0.21 deleterious(0) probably_damaging(1) TCGA-97-8172-01 3 52541635 52541635 T A STAB1 Missense_Mutation p.C666S 0.27 deleterious(0) probably_damaging(0.992) TCGA-97-8172-01 3 58817416 58817416 G - C3orf67 Frame_Shift_Del p.P473Hfs*14 0.21 TCGA-97-8172-01 3 77607127 77607127 C T ROBO2 Nonsense_Mutation p.Q438* 0.26 TCGA-97-8172-01 4 106621162 106621162 T G INTS12 Translation_Start_Site p.M1? 0.25 deleterious_low_confidence(0.02) benign(0.145) TCGA-97-8172-01 4 115998155 115998155 G A NDST4 Missense_Mutation p.T13I 0.25 tolerated_low_confidence(0.45) benign(0.135) TCGA-97-8172-01 4 39458036 39458036 C A RPL9 Silent p.R127R 0.31 TCGA-97-8172-01 4 44177161 44177161 G T KCTD8 Silent p.S356S 0.25 TCGA-97-8172-01 4 44177163 44177163 A G KCTD8 Missense_Mutation p.S356P 0.24 deleterious(0.02) probably_damaging(0.969) TCGA-97-8172-01 4 44177164 44177164 G T KCTD8 Silent p.L355L 0.24 TCGA-97-8172-01 4 53331 53331 A C ZNF595 5'UTR 0.05 TCGA-97-8172-01 4 57181089 57181089 C A KIAA1211 Missense_Mutation p.A474D 0.20 tolerated(0.64) possibly_damaging(0.82) TCGA-97-8172-01 4 57181090 57181090 C A KIAA1211 Silent p.A474A 0.19 TCGA-97-8172-01 4 68795599 68795599 A T TMPRSS11A Missense_Mutation p.N163K 0.29 tolerated(0.55) benign(0.05) TCGA-97-8172-01 4 70148356 70148356 C G UGT2B28 Missense_Mutation p.C282W 0.22 deleterious(0) possibly_damaging(0.624) TCGA-97-8172-01 4 70504982 70504982 G T UGT2A2 Missense_Mutation p.T126N 0.22 tolerated(0.35) benign(0.002) TCGA-97-8172-01 4 79240019 79240019 G T FRAS1 Silent p.G672G 0.14 TCGA-97-8172-01 4 8305914 8305914 G A HTRA3 Silent p.L368L 0.24 TCGA-97-8172-01 4 94344051 94344051 G A GRID2 Missense_Mutation p.D493N 0.20 deleterious(0) possibly_damaging(0.469) TCGA-97-8172-01 5 114466440 114466440 C T TRIM36 Missense_Mutation p.D561N 0.10 tolerated(0.05) benign(0.113) TCGA-97-8172-01 5 134782290 134782290 G T C5orf20 Nonsense_Mutation p.S170* 0.11 TCGA-97-8172-01 5 13862727 13862727 C G DNAH5 Missense_Mutation p.D1576H 0.11 probably_damaging(0.961) TCGA-97-8172-01 5 149563163 149563163 C A CDX1 Missense_Mutation p.L240M 0.13 tolerated(0.2) benign(0.146) TCGA-97-8172-01 5 154393474 154393474 C A KIF4B Missense_Mutation p.L19M 0.17 deleterious(0) probably_damaging(0.993) TCGA-97-8172-01 5 156590518 156590518 C A FAM71B Missense_Mutation p.S253I 0.06 tolerated(0.08) benign(0.093) TCGA-97-8172-01 5 177569900 177569900 C A RMND5B Missense_Mutation p.D111E 0.08 tolerated(0.56) benign(0.001) TCGA-97-8172-01 5 21817240 21817240 G T CDH12 Missense_Mutation p.S272R 0.23 tolerated(0.41) benign(0.008) TCGA-97-8172-01 5 39021181 39021181 G T RICTOR Nonsense_Mutation p.S52* 0.23 TCGA-97-8172-01 5 63256619 63256619 C T HTR1A Missense_Mutation p.E310K 0.12 tolerated(0.82) benign(0.052) TCGA-97-8172-01 5 75757421 75757421 G A IQGAP2 Missense_Mutation p.A25T 0.16 deleterious(0) probably_damaging(0.942) TCGA-97-8172-01 5 82837478 82837478 A G VCAN Missense_Mutation p.I2886V 0.17 tolerated(0.32) benign(0.002) TCGA-97-8172-01 5 82875858 82875858 C A VCAN Missense_Mutation p.R3314S 0.21 deleterious(0) probably_damaging(0.995) TCGA-97-8172-01 5 89921016 89921016 G A GPR98 Missense_Mutation p.G210S 0.20 probably_damaging(0.982) TCGA-97-8172-01 5 89921017 89921017 G A GPR98 Missense_Mutation p.G210D 0.24 probably_damaging(0.989) TCGA-97-8172-01 6 105406068 105406068 G T LIN28B Missense_Mutation p.K35N 0.26 deleterious(0) probably_damaging(0.999) TCGA-97-8172-01 6 109815259 109815259 C T AK9 Missense_Mutation p.G1820R 0.09 deleterious(0) probably_damaging(0.979) TCGA-97-8172-01 6 114181672 114181672 G T MARCKS Missense_Mutation p.A306S 0.21 tolerated_low_confidence(0.37) unknown(0) TCGA-97-8172-01 6 127767820 127767820 A G KIAA0408 Silent p.S548S 0.19 TCGA-97-8172-01 6 130762913 130762913 C T TMEM200A Missense_Mutation p.A449V 0.09 tolerated(0.09) benign(0.001) TCGA-97-8172-01 6 131215508 131215508 C A EPB41L2 Missense_Mutation p.C488F 0.25 deleterious(0) probably_damaging(0.999) TCGA-97-8172-01 6 139583904 139583904 C A TXLNB Missense_Mutation p.A232S 0.22 tolerated(0.15) benign(0.006) TCGA-97-8172-01 6 146121371 146121371 G T FBXO30 Missense_Mutation p.H703Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-97-8172-01 6 160913883 160913883 G A LPAL2 RNA 0.10 TCGA-97-8172-01 6 165827040 165827040 G T PDE10A Missense_Mutation p.N409K 0.29 tolerated(0.16) possibly_damaging(0.486) TCGA-97-8172-01 6 17292272 17292272 C T RBM24 Silent p.A211A 0.11 TCGA-97-8172-01 6 26124432 26124432 C T HIST1H2AC 5'UTR 0.33 TCGA-97-8172-01 6 31964305 31964305 C A C4A Missense_Mutation p.L1202M 0.14 deleterious(0) probably_damaging(0.993) TCGA-97-8172-01 6 32166772 32166772 C T NOTCH4 Missense_Mutation p.R1489Q 0.19 tolerated(0.23) benign(0.025) TCGA-97-8172-01 6 32180372 32180372 G T NOTCH4 Nonsense_Mutation p.C853* 0.16 TCGA-97-8172-01 6 32726867 32726867 G A HLA-DQB2 Missense_Mutation p.L136F 0.13 deleterious(0) probably_damaging(0.933) TCGA-97-8172-01 6 36298434 36298434 C T C6orf222 Missense_Mutation p.A12T 0.12 tolerated(0.2) benign(0.001) TCGA-97-8172-01 6 38800190 38800190 C A DNAH8 Missense_Mutation p.N1210K 0.20 benign(0.004) TCGA-97-8172-01 6 44226874 44226874 C A NFKBIE 3'UTR 0.22 TCGA-97-8172-01 6 70854147 70854147 G - COL19A1 Frame_Shift_Del p.G558Efs*10 0.18 TCGA-97-8172-01 6 7862714 7862714 G T BMP6 Missense_Mutation p.R396L 0.17 tolerated(0.43) possibly_damaging(0.785) TCGA-97-8172-01 6 80202330 80202330 T A LCA5 Missense_Mutation p.Y298F 0.21 deleterious(0.01) probably_damaging(1) TCGA-97-8172-01 6 80715700 80715700 G T TTK Splice_Site p.X47_splice 0.15 TCGA-97-8172-01 6 94120262 94120262 A T EPHA7 Nonsense_Mutation p.C263* 0.23 TCGA-97-8172-01 7 127230161 127230161 C T ARF5 Silent p.V100V 0.26 TCGA-97-8172-01 7 128807730 128807730 C T TSPAN33 3'UTR 0.26 TCGA-97-8172-01 7 130364109 130364109 C A TSGA13 Missense_Mutation p.D91Y 0.20 deleterious(0) probably_damaging(0.934) TCGA-97-8172-01 7 136699972 136699972 C - CHRM2 Frame_Shift_Del p.D120Efs*10 0.21 TCGA-97-8172-01 7 142008666 142008666 G T TRBV3-1 Missense_Mutation p.G47C 0.20 deleterious(0) probably_damaging(0.997) TCGA-97-8172-01 7 143268907 143268907 C T CTAGE15 5'UTR 0.32 TCGA-97-8172-01 7 144098420 144098420 G T NOBOX Missense_Mutation p.P188Q 0.24 tolerated(0.14) probably_damaging(0.965) TCGA-97-8172-01 7 18630021 18630021 G T HDAC9 Silent p.L109L 0.20 TCGA-97-8172-01 7 18630022 18630022 G T HDAC9 Nonsense_Mutation p.E110* 0.20 TCGA-97-8172-01 7 27147768 27147768 G A HOXA3 Silent p.F366F 0.18 TCGA-97-8172-01 7 44152274 44152274 C T AEBP1 Missense_Mutation p.P779S 0.38 tolerated(0.09) benign(0.173) TCGA-97-8172-01 7 48411966 48411966 A T ABCA13 Missense_Mutation p.S3669C 0.23 probably_damaging(0.994) TCGA-97-8172-01 7 55233129 55233129 G T EGFR Nonsense_Mutation p.G627* 0.09 TCGA-97-8172-01 7 82584611 82584611 C A PCLO Missense_Mutation p.L1886F 0.25 unknown(0) TCGA-97-8172-01 7 83634783 83634783 T C SEMA3A Missense_Mutation p.N411S 0.23 tolerated(0.11) possibly_damaging(0.788) TCGA-97-8172-01 7 86394908 86394908 T C GRM3 Silent p.S149S 0.23 TCGA-97-8172-01 8 121238908 121238908 C T COL14A1 Missense_Mutation p.T636M 0.22 deleterious(0) benign(0.027) TCGA-97-8172-01 8 139164424 139164424 G T FAM135B Missense_Mutation p.T765N 0.12 tolerated(0.26) benign(0.025) TCGA-97-8172-01 8 143746052 143746052 C - JRK RNA 0.46 TCGA-97-8172-01 8 145650100 145650100 C G VPS28 Splice_Site p.X134_splice 0.27 TCGA-97-8172-01 8 1497722 1497722 G T DLGAP2 Missense_Mutation p.R288L 0.46 deleterious(0) probably_damaging(0.999) TCGA-97-8172-01 8 20110466 20110466 G C LZTS1 Missense_Mutation p.R326G 0.23 deleterious(0) probably_damaging(0.988) TCGA-97-8172-01 8 23306297 23306297 C T ENTPD4 Missense_Mutation p.R55Q 0.05 tolerated(0.16) benign(0.122) TCGA-97-8172-01 8 28574374 28574374 G A EXTL3 Nonsense_Mutation p.W266* 0.21 TCGA-97-8172-01 8 3000071 3000071 G A CSMD1 Silent p.L2053L 0.21 TCGA-97-8172-01 8 30706378 30706378 T A TEX15 Missense_Mutation p.R52S 0.15 deleterious(0) probably_damaging(0.998) TCGA-97-8172-01 8 30706379 30706379 C A TEX15 Missense_Mutation p.R52I 0.15 deleterious(0) probably_damaging(0.999) TCGA-97-8172-01 8 43147805 43147805 C A POTEA RNA 0.19 TCGA-97-8172-01 8 70585449 70585449 A C SLCO5A1 Missense_Mutation p.F734L 0.15 tolerated(0.15) benign(0.042) TCGA-97-8172-01 8 70744246 70744247 GG - SLCO5A1 Frame_Shift_Del p.P221Lfs*38 0.17 TCGA-97-8172-01 8 74529688 74529688 T A STAU2 Splice_Site p.X137_splice 0.17 TCGA-97-8172-01 8 87155124 87155124 T C ATP6V0D2 Missense_Mutation p.Y194H 0.18 tolerated(0.22) benign(0.261) TCGA-97-8172-01 9 107298915 107298915 G T OR13C3 Silent p.L60L 0.25 TCGA-97-8172-01 9 113163220 113163220 T C SVEP1 Missense_Mutation p.S3246G 0.11 benign(0.403) TCGA-97-8172-01 9 126133511 126133511 C G CRB2 Missense_Mutation p.T697R 0.24 tolerated(0.06) possibly_damaging(0.507) TCGA-97-8172-01 9 130478238 130478238 C T PTRH1 5'UTR 0.21 TCGA-97-8172-01 9 130575629 130575629 C - FPGS Frame_Shift_Del p.H505Tfs*62 0.19 TCGA-97-8172-01 9 131802879 131802879 G T FAM73B Silent p.A2A 0.20 TCGA-97-8172-01 9 134526226 134526226 C T RAPGEF1 Missense_Mutation p.V59I 0.06 deleterious_low_confidence(0.04) benign(0.027) TCGA-97-8172-01 9 135153498 135153498 G C SETX Missense_Mutation p.F2267L 0.19 deleterious(0) probably_damaging(0.999) TCGA-97-8172-01 9 138594093 138594093 C A KCNT1 5'UTR 0.12 TCGA-97-8172-01 9 39888156 39888156 C T SPATA31A2 Silent p.P381P 0.16 TCGA-97-8172-01 9 6329093 6329093 C T TPD52L3 3'UTR 0.32 TCGA-97-8172-01 9 77431670 77431670 G A TRPM6 Missense_Mutation p.A408V 0.10 deleterious(0.03) benign(0.052) TCGA-97-8172-01 9 79118535 79118535 G T GCNT1 Missense_Mutation p.C413F 0.20 deleterious(0) probably_damaging(0.999) TCGA-97-8172-01 9 79816284 79816284 C T VPS13A Nonsense_Mutation p.Q50* 0.12 TCGA-97-8172-01 9 8465638 8465638 C T PTPRD Missense_Mutation p.R1181H 0.09 deleterious(0) benign(0.066) TCGA-97-8172-01 X 104464799 104464799 C A TEX13A Missense_Mutation p.G95C 0.16 deleterious(0) possibly_damaging(0.712) TCGA-97-8172-01 X 106224171 106224171 C A MORC4 Missense_Mutation p.A296S 0.24 tolerated(0.7) benign(0.016) TCGA-97-8172-01 X 111698016 111698016 A G ZCCHC16 Silent p.A20A 0.48 TCGA-97-8172-01 X 12736290 12736290 T A FRMPD4 Missense_Mutation p.F1115L 0.33 tolerated_low_confidence(0.56) benign(0.001) TCGA-97-8172-01 X 135570212 135570212 G A BRS3 5'UTR 0.09 TCGA-97-8172-01 X 151376484 151376484 C A GABRA3 Missense_Mutation p.R256L 0.07 deleterious(0.04) benign(0.233) TCGA-97-8172-01 X 155004454 155004454 G T SPRY3 3'UTR 0.57 TCGA-97-8172-01 X 22051049 22051049 A G PHEX 5'UTR 0.35 TCGA-97-8172-01 X 44879872 44879872 A T KDM6A Missense_Mutation p.Q154L 0.35 deleterious(0) benign(0.042) TCGA-97-8172-01 X 6069324 6069324 A T NLGN4X Missense_Mutation p.L62I 0.29 deleterious(0.02) probably_damaging(0.978) TCGA-97-8172-01 X 89177276 89177276 C A TGIF2LX Silent p.I64I 0.48 TCGA-97-8172-01 X 89177277 89177277 C A TGIF2LX Missense_Mutation p.L65I 0.47 deleterious(0) probably_damaging(0.952) TCGA-97-8172-01 X 91132254 91132254 G T PCDH11X Missense_Mutation p.A339S 0.44 deleterious(0.04) possibly_damaging(0.538) TCGA-97-8174-01 10 123845735 123845735 C A TACC2 Silent p.V1240V 0.11 TCGA-97-8174-01 10 135184159 135184159 C T ECHS1 Missense_Mutation p.G64D 0.16 tolerated(0.22) benign(0.115) TCGA-97-8174-01 10 18837139 18837139 C A NSUN6 Missense_Mutation p.V367L 0.19 deleterious(0.03) benign(0.03) TCGA-97-8174-01 10 27821445 27821445 G C RAB18 Missense_Mutation p.G66R 0.19 deleterious(0) probably_damaging(0.995) TCGA-97-8174-01 10 48370925 48370925 C A ZNF488 Silent p.A131A 0.25 TCGA-97-8174-01 10 50315974 50315974 T C VSTM4 Missense_Mutation p.N41S 0.21 deleterious(0) probably_damaging(0.998) TCGA-97-8174-01 10 69970290 69970303 AGCAACCGAAGTTG - MYPN 3'UTR 0.19 TCGA-97-8174-01 10 95276880 95276880 G C CEP55 Missense_Mutation p.D290H 0.16 deleterious(0.03) probably_damaging(0.96) TCGA-97-8174-01 10 98146741 98146741 G A TLL2 Silent p.Y607Y 0.19 TCGA-97-8174-01 11 1586994 1586994 C A DUSP8 Silent p.R21R 0.39 TCGA-97-8174-01 11 31785031 31785031 A G ELP4 Intron 0.32 TCGA-97-8174-01 11 4935969 4935969 T C OR51G2 Missense_Mutation p.T309A 0.13 tolerated(0.07) benign(0.001) TCGA-97-8174-01 11 55872634 55872634 C A OR8H2 Missense_Mutation p.T39N 0.26 deleterious(0.01) probably_damaging(0.931) TCGA-97-8174-01 11 55873137 55873137 C A OR8H2 Missense_Mutation p.L207M 0.26 tolerated(0.21) probably_damaging(0.951) TCGA-97-8174-01 11 59189613 59189613 C T OR5A2 Missense_Mutation p.D272N 0.08 tolerated(0.23) possibly_damaging(0.597) TCGA-97-8174-01 11 66394035 66394035 C T RBM14 Missense_Mutation p.R636C 0.29 deleterious(0) unknown(0) TCGA-97-8174-01 11 66411316 66411316 G A RBM14-RBM4 Missense_Mutation p.D245N 0.11 tolerated(0.22) unknown(0) TCGA-97-8174-01 11 88338056 88338056 G C GRM5 Silent p.A408A 0.12 TCGA-97-8174-01 11 88338057 88338057 G C GRM5 Missense_Mutation p.A408G 0.13 tolerated(0.07) probably_damaging(0.997) TCGA-97-8174-01 12 10134636 10134636 G T CLEC12A Missense_Mutation p.Q193H 0.26 tolerated(0.11) benign(0.016) TCGA-97-8174-01 12 110765776 110765776 C T ATP2A2 Missense_Mutation p.S350L 0.22 deleterious(0.02) possibly_damaging(0.544) TCGA-97-8174-01 12 133249225 133249225 G A POLE Silent p.C558C 0.06 TCGA-97-8174-01 12 21712055 21712055 T A GYS2 Silent p.T426T 0.24 TCGA-97-8174-01 12 29689187 29689187 C A TMTC1 Missense_Mutation p.E580D 0.13 tolerated(0.51) benign(0.005) TCGA-97-8174-01 12 49225085 49225085 T C DDX23 Silent p.T693T 0.24 TCGA-97-8174-01 12 49444940 49444940 C G KMT2D Silent p.L842L 0.12 TCGA-97-8174-01 12 78515899 78515899 C A NAV3 Missense_Mutation p.P1310H 0.20 deleterious(0.02) probably_damaging(1) TCGA-97-8174-01 12 78592424 78592424 A G NAV3 Silent p.S2140S 0.11 TCGA-97-8174-01 13 101742056 101742056 G T NALCN Silent p.T1149T 0.24 TCGA-97-8174-01 13 103518708 103518708 G T BIVM-ERCC5 Nonsense_Mutation p.G1192* 0.16 TCGA-97-8174-01 13 114514731 114514731 C T TMEM255B Missense_Mutation p.A279V 0.08 tolerated(0.07) benign(0.03) TCGA-97-8174-01 13 42876873 42876873 C T AKAP11 Silent p.L1331L 0.09 TCGA-97-8174-01 13 47316031 47316031 G C LRCH1 3'UTR 0.09 TCGA-97-8174-01 13 70275757 70275757 A G KLHL1 3'UTR 0.27 TCGA-97-8174-01 14 31619285 31619285 C A HECTD1 Missense_Mutation p.G692V 0.19 deleterious(0) probably_damaging(0.999) TCGA-97-8174-01 14 45605533 45605533 G T FANCM Missense_Mutation p.R100L 0.28 deleterious(0.01) benign(0.111) TCGA-97-8174-01 14 47566300 47566300 C A MDGA2 Missense_Mutation p.D318Y 0.21 deleterious(0) possibly_damaging(0.859) TCGA-97-8174-01 14 50100868 50100868 G A DNAAF2 Nonsense_Mutation p.Q334* 0.44 TCGA-97-8174-01 14 66096222 66096222 G T FUT8 Silent p.T165T 0.24 TCGA-97-8174-01 14 81670442 81670442 C - GTF2A1 Frame_Shift_Del p.E47Kfs*4 0.32 TCGA-97-8174-01 14 94936000 94936000 C G SERPINA9 Missense_Mutation p.V78L 0.32 tolerated(0.19) benign(0.009) TCGA-97-8174-01 14 96779474 96779474 C T ATG2B Missense_Mutation p.R1257Q 0.14 deleterious(0) probably_damaging(0.971) TCGA-97-8174-01 15 25322123 25322123 G C SNORD116-9 3'Flank 0.28 TCGA-97-8174-01 15 25322124 25322124 G T SNORD116-9 3'Flank 0.28 TCGA-97-8174-01 15 25456808 25456808 C A SNORD115-22 3'Flank 0.28 TCGA-97-8174-01 15 28513742 28513742 G T HERC2 Silent p.G489G 0.28 TCGA-97-8174-01 15 41191514 41191514 A T VPS18 Missense_Mutation p.Q166H 0.22 deleterious(0.02) benign(0.076) TCGA-97-8174-01 15 41193186 41193186 G T VPS18 Nonsense_Mutation p.E724* 0.09 TCGA-97-8174-01 15 45444087 45444087 G A DUOX1 Silent p.Q1010Q 0.14 TCGA-97-8174-01 15 48539131 48539131 G A SLC12A1 Missense_Mutation p.G493D 0.23 deleterious(0) possibly_damaging(0.878) TCGA-97-8174-01 15 74327004 74327004 A G PML Intron 0.25 TCGA-97-8174-01 15 76629167 76629167 G C ISL2 5'UTR 0.33 TCGA-97-8174-01 16 2607892 2607892 G A PDPK1 Silent p.P71P 0.23 TCGA-97-8174-01 16 30536019 30536019 C A ZNF768 Missense_Mutation p.G481V 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-97-8174-01 17 10267668 10267668 G C MYH13 Silent p.V60V 0.28 TCGA-97-8174-01 17 10300290 10300290 G C MYH8 Missense_Mutation p.Q1398E 0.26 tolerated(0.08) possibly_damaging(0.863) TCGA-97-8174-01 17 10300291 10300291 G T MYH8 Silent p.A1397A 0.26 TCGA-97-8174-01 17 10364329 10364329 C A MYH4 Missense_Mutation p.A351S 0.15 tolerated(0.57) benign(0.003) TCGA-97-8174-01 17 11511555 11511555 T C DNAH9 Missense_Mutation p.I176T 0.20 benign(0.001) TCGA-97-8174-01 17 27306808 27306808 C T SEZ6 Missense_Mutation p.G250S 0.15 tolerated(0.18) possibly_damaging(0.677) TCGA-97-8174-01 17 39973440 39973440 G T FKBP10 Missense_Mutation p.G126W 0.28 deleterious(0) probably_damaging(1) TCGA-97-8174-01 17 4497156 4497156 G T SMTNL2 Missense_Mutation p.G257V 0.21 deleterious(0.01) possibly_damaging(0.662) TCGA-97-8174-01 17 5050377 5050377 G T USP6 Splice_Site p.X774_splice 0.22 TCGA-97-8174-01 17 62049992 62049992 G T SCN4A Missense_Mutation p.D70E 0.19 tolerated(0.07) benign(0.018) TCGA-97-8174-01 17 6927438 6927438 A G BCL6B Silent p.G72G 0.22 TCGA-97-8174-01 18 52602071 52602071 G A CCDC68 Missense_Mutation p.L194F 0.15 tolerated(0.09) probably_damaging(0.986) TCGA-97-8174-01 18 63511180 63511180 G T CDH7 Missense_Mutation p.D372Y 0.25 deleterious(0) probably_damaging(0.95) TCGA-97-8174-01 19 14208663 14208663 C G PRKACA Silent p.L153L 0.07 TCGA-97-8174-01 19 19655534 19655534 T A CILP2 Missense_Mutation p.F727Y 0.29 tolerated(0.06) probably_damaging(0.997) TCGA-97-8174-01 19 21607376 21607376 A T ZNF493 Nonsense_Mutation p.K639* 0.15 TCGA-97-8174-01 19 38102699 38102699 C G ZNF540 Nonsense_Mutation p.S173* 0.12 TCGA-97-8174-01 19 39100610 39100610 T C MAP4K1 Missense_Mutation p.D289G 0.14 deleterious(0) benign(0.211) TCGA-97-8174-01 19 39826638 39826638 C G GMFG 5'UTR 0.09 TCGA-97-8174-01 19 42259611 42259611 G A CEACAM6 Splice_Site p.X22_splice 0.05 TCGA-97-8174-01 19 51918654 51918654 G T SIGLEC10 Missense_Mutation p.L371M 0.39 deleterious(0.02) probably_damaging(0.987) TCGA-97-8174-01 19 58187863 58187863 G T ZSCAN4 Missense_Mutation p.R117I 0.30 deleterious(0) benign(0.334) TCGA-97-8174-01 19 6501408 6501408 C A TUBB4A Missense_Mutation p.G56V 0.37 deleterious_low_confidence(0.02) benign(0.175) TCGA-97-8174-01 1 115576635 115576635 C A TSHB Silent p.S68S 0.17 TCGA-97-8174-01 1 155206143 155206143 T A GBA Missense_Mutation p.T373S 0.19 tolerated(0.23) benign(0.027) TCGA-97-8174-01 1 159163815 159163815 C T CADM3 Missense_Mutation p.R260C 0.09 tolerated(0.17) possibly_damaging(0.663) TCGA-97-8174-01 1 162743265 162743265 C T DDR2 Missense_Mutation p.L579F 0.19 deleterious(0) probably_damaging(1) TCGA-97-8174-01 1 167097000 167097000 G T DUSP27 Nonsense_Mutation p.E878* 0.17 TCGA-97-8174-01 1 169366521 169366521 A C CCDC181 Missense_Mutation p.L441V 0.29 tolerated(0.91) possibly_damaging(0.799) TCGA-97-8174-01 1 170004651 170004651 C T KIFAP3 Nonsense_Mutation p.W187* 0.16 TCGA-97-8174-01 1 182845247 182845247 A G DHX9 Silent p.Q626Q 0.24 TCGA-97-8174-01 1 19519034 19519034 G A UBR4 Missense_Mutation p.L382F 0.24 probably_damaging(0.971) TCGA-97-8174-01 1 197169565 197169565 C G ZBTB41 Missense_Mutation p.K13N 0.06 deleterious_low_confidence(0.01) benign(0.063) TCGA-97-8174-01 1 223568335 223568335 G A C1orf65 Silent p.L506L 0.08 TCGA-97-8174-01 1 226076619 226076619 C T LEFTY1 Missense_Mutation p.E50K 0.11 tolerated(0.61) benign(0.001) TCGA-97-8174-01 1 228547550 228547550 G C OBSCN Intron 0.29 TCGA-97-8174-01 1 230846468 230846468 G A AGT Silent p.L43L 0.13 TCGA-97-8174-01 1 243328054 243328054 C A CEP170 Nonsense_Mutation p.G1070* 0.23 TCGA-97-8174-01 1 247463849 247463849 C G ZNF496 Missense_Mutation p.R579P 0.24 deleterious(0.03) possibly_damaging(0.901) TCGA-97-8174-01 1 248112269 248112269 C A OR2L8 Missense_Mutation p.A37D 0.31 deleterious(0) probably_damaging(0.985) TCGA-97-8174-01 1 248112637 248112637 G T OR2L8 Missense_Mutation p.V160L 0.29 tolerated(0.31) benign(0.04) TCGA-97-8174-01 1 248201606 248201606 T A OR2L2 Missense_Mutation p.L13I 0.27 deleterious(0) probably_damaging(0.956) TCGA-97-8174-01 1 248458871 248458876 TCATCT ACATC OR2T12 Frame_Shift_Del p.E2Gfs*12 0.09 TCGA-97-8174-01 1 248569989 248569989 C A OR2T1 Missense_Mutation p.P232T 0.17 deleterious(0) probably_damaging(0.998) TCGA-97-8174-01 1 248569990 248569990 C A OR2T1 Missense_Mutation p.P232Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-97-8174-01 1 248652131 248652131 C A OR2T5 Missense_Mutation p.T81N 0.17 deleterious(0.01) probably_damaging(0.973) TCGA-97-8174-01 1 36181316 36181316 C G C1orf216 Missense_Mutation p.D203H 0.10 deleterious(0) probably_damaging(1) TCGA-97-8174-01 1 62704015 62704015 G T KANK4 Silent p.P974P 0.16 TCGA-97-8174-01 1 7723444 7723444 C A CAMTA1 Missense_Mutation p.N279K 0.20 deleterious(0) probably_damaging(0.993) TCGA-97-8174-01 1 77627083 77627083 G C PIGK Missense_Mutation p.P237R 0.27 tolerated(0.31) possibly_damaging(0.666) TCGA-97-8174-01 1 7811339 7811339 C G CAMTA1 Missense_Mutation p.F1590L 0.07 deleterious(0.02) probably_damaging(0.994) TCGA-97-8174-01 1 92737073 92737073 T A GLMN Missense_Mutation p.Y291F 0.24 deleterious(0.03) probably_damaging(0.909) TCGA-97-8174-01 20 20150085 20150085 C A C20orf26 Missense_Mutation p.H456N 0.09 deleterious(0.03) benign(0.203) TCGA-97-8174-01 20 33232030 33232030 T C PIGU Missense_Mutation p.I86V 0.21 tolerated(0.41) benign(0.003) TCGA-97-8174-01 20 3362107 3362107 C A C20orf194 Missense_Mutation p.A68S 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-97-8174-01 20 45912347 45912347 G - ZMYND8 Frame_Shift_Del p.Q284Kfs*22 0.12 TCGA-97-8174-01 20 47990088 47990088 C A KCNB1 Missense_Mutation p.R670L 0.33 deleterious_low_confidence(0) benign(0.041) TCGA-97-8174-01 20 6750998 6750998 G C BMP2 Silent p.V75V 0.11 TCGA-97-8174-01 20 9510306 9510306 G A LAMP5 Missense_Mutation p.D228N 0.08 deleterious(0.01) probably_damaging(1) TCGA-97-8174-01 21 10863004 10863004 G T IGHV1OR21-1 Missense_Mutation p.M100I 0.09 deleterious(0.03) benign(0.107) TCGA-97-8174-01 21 30359174 30359174 G A LTN1 Nonsense_Mutation p.Q88* 0.05 TCGA-97-8174-01 21 32410513 32410513 G T KRTAP19-8 3'UTR 0.25 TCGA-97-8174-01 21 32410514 32410514 G T KRTAP19-8 3'UTR 0.26 TCGA-97-8174-01 21 32492919 32492919 C A TIAM1 Missense_Mutation p.V1515L 0.27 tolerated(0.67) benign(0.002) TCGA-97-8174-01 22 17443568 17443568 G T GAB4 3'UTR 0.21 TCGA-97-8174-01 22 18028887 18028887 G A CECR2 Missense_Mutation p.A1283T 0.06 deleterious(0) probably_damaging(0.999) TCGA-97-8174-01 22 20920866 20920866 C T MED15 Missense_Mutation p.P268L 0.36 deleterious_low_confidence(0.04) unknown(0) TCGA-97-8174-01 22 26286748 26286748 C T MYO18B Missense_Mutation p.A1447V 0.06 deleterious(0) probably_damaging(0.967) TCGA-97-8174-01 2 100210225 100210225 T C AFF3 Missense_Mutation p.N658S 0.40 tolerated(0.83) benign(0.001) TCGA-97-8174-01 2 101879140 101879140 G C CNOT11 Missense_Mutation p.K273N 0.32 tolerated(0.32) benign(0.081) TCGA-97-8174-01 2 106498387 106498387 G T NCK2 Missense_Mutation p.S277I 0.31 tolerated(0.21) benign(0.001) TCGA-97-8174-01 2 132240264 132240264 A C TUBA3D Missense_Mutation p.Y399S 0.06 deleterious_low_confidence(0) possibly_damaging(0.824) TCGA-97-8174-01 2 163004009 163004009 G C GCG Silent p.S36S 0.07 TCGA-97-8174-01 2 163215668 163215668 G T GCA Splice_Site p.X190_splice 0.09 TCGA-97-8174-01 2 164467547 164467547 C A FIGN Silent p.G265G 0.32 TCGA-97-8174-01 2 166756310 166756310 C G TTC21B Missense_Mutation p.Q946H 0.06 tolerated(0.06) possibly_damaging(0.62) TCGA-97-8174-01 2 175346332 175346332 C A GPR155 Missense_Mutation p.C118F 0.31 deleterious(0.01) probably_damaging(0.995) TCGA-97-8174-01 2 178098801 178098801 C G NFE2L2 Missense_Mutation p.E82Q 0.10 deleterious(0) probably_damaging(1) TCGA-97-8174-01 2 191334511 191334511 T C MFSD6 Silent p.N520N 0.08 TCGA-97-8174-01 2 191334528 191334528 A T MFSD6 Missense_Mutation p.Y526F 0.08 deleterious(0.01) possibly_damaging(0.833) TCGA-97-8174-01 2 220404948 220404948 C A CHPF Missense_Mutation p.E495D 0.16 deleterious(0) probably_damaging(0.95) TCGA-97-8174-01 2 233323118 233323118 G A ALPI Missense_Mutation p.G395R 0.48 deleterious(0.01) probably_damaging(0.991) TCGA-97-8174-01 2 24244731 24244731 C G MFSD2B Missense_Mutation p.P262R 0.25 tolerated(0.48) benign(0.078) TCGA-97-8174-01 2 69472589 69472589 C T ANTXR1 Missense_Mutation p.S556F 0.40 deleterious_low_confidence(0.04) unknown(0) TCGA-97-8174-01 3 100295766 100295766 C G TMEM45A Intron 0.09 TCGA-97-8174-01 3 112262939 112262939 T A ATG3 Missense_Mutation p.T120S 0.27 tolerated(0.4) benign(0.042) TCGA-97-8174-01 3 121351300 121351300 C A HCLS1 Missense_Mutation p.E373D 0.17 tolerated(0.42) benign(0.217) TCGA-97-8174-01 3 128181862 128181862 C A DNAJB8 Missense_Mutation p.G76V 0.09 deleterious(0.03) benign(0.314) TCGA-97-8174-01 3 138375036 138375036 A T PIK3CB Nonsense_Mutation p.L1008* 0.23 TCGA-97-8174-01 3 183756230 183756230 T - HTR3D Frame_Shift_Del p.V318Gfs*63 0.17 TCGA-97-8174-01 3 184947222 184947222 G A EHHADH Missense_Mutation p.S154L 0.11 deleterious(0) possibly_damaging(0.683) TCGA-97-8174-01 3 19384137 19384137 T A KCNH8 Missense_Mutation p.S167R 0.19 deleterious(0.01) possibly_damaging(0.901) TCGA-97-8174-01 3 33885676 33885676 A T PDCD6IP Missense_Mutation p.R483W 0.12 deleterious(0) probably_damaging(1) TCGA-97-8174-01 3 46939381 46939381 G T PTH1R Missense_Mutation p.C117F 0.22 deleterious(0) probably_damaging(1) TCGA-97-8174-01 3 6903475 6903475 G A GRM7 Missense_Mutation p.V134M 0.17 tolerated(0.08) probably_damaging(0.999) TCGA-97-8174-01 3 9034649 9034649 G T SRGAP3 Missense_Mutation p.N833K 0.19 tolerated(0.95) benign(0.264) TCGA-97-8174-01 4 106603920 106603920 C A INTS12 Missense_Mutation p.K453N 0.08 deleterious_low_confidence(0) unknown(0) TCGA-97-8174-01 4 110603814 110603814 T A CCDC109B Missense_Mutation p.H176Q 0.25 deleterious(0.01) benign(0.309) TCGA-97-8174-01 4 113353354 113353354 G T ALPK1 Missense_Mutation p.R884M 0.22 tolerated(0.13) benign(0.008) TCGA-97-8174-01 4 114280399 114280399 C A ANK2 Missense_Mutation p.S3542Y 0.26 probably_damaging(0.94) TCGA-97-8174-01 4 174090066 174090066 C T GALNT7 Missense_Mutation p.S27F 0.19 deleterious_low_confidence(0) possibly_damaging(0.691) TCGA-97-8174-01 4 1742645 1742645 G T TACC3 Nonsense_Mutation p.E719* 0.11 TCGA-97-8174-01 4 1952852 1952852 C T WHSC1 Silent p.D645D 0.11 TCGA-97-8174-01 4 2097595 2097595 G A POLN Missense_Mutation p.A683V 0.26 deleterious(0.03) benign(0.037) TCGA-97-8174-01 4 57272658 57272658 T G PPAT Intron 0.19 TCGA-97-8174-01 4 70715156 70715156 C A SULT1E1 Missense_Mutation p.Q165H 0.18 deleterious(0) possibly_damaging(0.453) TCGA-97-8174-01 4 8021391 8021391 G T ABLIM2 Silent p.G459G 0.15 TCGA-97-8174-01 5 131630489 131630489 C T SLC22A4 Silent p.S60S 0.12 TCGA-97-8174-01 5 140554472 140554472 G A PCDHB7 Missense_Mutation p.V686I 0.09 tolerated_low_confidence(0.15) benign(0.018) TCGA-97-8174-01 5 140712441 140712441 C T PCDHGA1 Silent p.G730G 0.09 TCGA-97-8174-01 5 147902753 147902753 C A HTR4 Intron 0.10 TCGA-97-8174-01 5 167645134 167645134 G A TENM2 Missense_Mutation p.R1413H 0.19 tolerated(0.1) benign(0.059) TCGA-97-8174-01 5 177547519 177547519 G T N4BP3 Missense_Mutation p.R224L 0.14 deleterious(0) probably_damaging(0.991) TCGA-97-8174-01 5 178417643 178417643 T G GRM6 Missense_Mutation p.D321A 0.14 tolerated(0.27) benign(0.02) TCGA-97-8174-01 5 41019059 41019059 T A MROH2B Missense_Mutation p.R835W 0.14 deleterious(0.01) possibly_damaging(0.525) TCGA-97-8174-01 5 78111866 78111866 C G ARSB Intron 0.09 TCGA-97-8174-01 6 132058512 132058512 G A ENPP3 Missense_Mutation p.D703N 0.15 tolerated(0.39) benign(0.013) TCGA-97-8174-01 6 151917607 151917607 C A CCDC170 Silent p.I535I 0.33 TCGA-97-8174-01 6 31556841 31556841 G T NCR3 3'UTR 0.20 TCGA-97-8174-01 6 42978258 42978258 C G PPP2R5D Missense_Mutation p.Q478E 0.07 tolerated(0.15) possibly_damaging(0.591) TCGA-97-8174-01 6 75862069 75862069 C A COL12A1 Missense_Mutation p.G1232V 0.27 possibly_damaging(0.884) TCGA-97-8174-01 6 84234145 84234145 G A PRSS35 Missense_Mutation p.D329N 0.24 deleterious(0) possibly_damaging(0.802) TCGA-97-8174-01 7 101200713 101200713 T A COL26A1 Missense_Mutation p.M409K 0.29 deleterious(0.03) possibly_damaging(0.718) TCGA-97-8174-01 7 147336367 147336367 C T CNTNAP2 Silent p.F689F 0.07 TCGA-97-8174-01 7 38431514 38431514 G A AMPH Silent p.D571D 0.19 TCGA-97-8174-01 7 44555689 44555689 T A NPC1L1 Silent p.G1236G 0.19 TCGA-97-8174-01 7 53103857 53103857 G T POM121L12 Missense_Mutation p.A165S 0.16 tolerated(0.08) probably_damaging(0.923) TCGA-97-8174-01 7 56149352 56149352 G C PHKG1 Missense_Mutation p.R329G 0.24 tolerated(0.06) probably_damaging(0.999) TCGA-97-8174-01 7 6068591 6068591 T C EIF2AK1 Missense_Mutation p.I469V 0.16 tolerated(0.1) benign(0.098) TCGA-97-8174-01 7 93519621 93519621 C T TFPI2 Silent p.A33A 0.15 TCGA-97-8174-01 7 99564646 99564646 C A AZGP1 Missense_Mutation p.V293L 0.23 tolerated(0.66) benign(0.028) TCGA-97-8174-01 8 106431380 106431380 G C ZFPM2 Missense_Mutation p.E17Q 0.26 tolerated(0.2) possibly_damaging(0.703) TCGA-97-8174-01 8 10755929 10755929 C A XKR6 Missense_Mutation p.G487W 0.16 deleterious(0) probably_damaging(1) TCGA-97-8174-01 8 11162519 11162519 G T MTMR9 Missense_Mutation p.G196V 0.29 deleterious(0.04) benign(0.337) TCGA-97-8174-01 8 11420538 11420538 G T BLK Missense_Mutation p.V411F 0.17 tolerated(0.26) possibly_damaging(0.903) TCGA-97-8174-01 8 131793006 131793006 C T ADCY8 Missense_Mutation p.R1129Q 0.09 tolerated(0.06) possibly_damaging(0.553) TCGA-97-8174-01 8 143993365 143993365 C T CYP11B2 3'UTR 0.20 TCGA-97-8174-01 8 144775972 144775972 G T ZNF707 Missense_Mutation p.D130Y 0.13 tolerated(0.24) benign(0) TCGA-97-8174-01 8 145101765 145101765 G A SPATC1 Missense_Mutation p.V562M 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-97-8174-01 8 24811114 24811114 C A CTD-2168K21.2 5'Flank 0.18 TCGA-97-8174-01 8 27097515 27097515 G T STMN4 Silent p.A188A 0.19 TCGA-97-8174-01 8 32621319 32621319 C A NRG1 Missense_Mutation p.T446K 0.19 tolerated(0.08) possibly_damaging(0.811) TCGA-97-8174-01 8 38677945 38677945 A G TACC1 Missense_Mutation p.N395D 0.14 tolerated(0.12) benign(0.005) TCGA-97-8174-01 8 57079692 57079692 C A PLAG1 Missense_Mutation p.V205L 0.16 deleterious(0) probably_damaging(0.935) TCGA-97-8174-01 8 75156935 75156935 T C JPH1 Silent p.S578S 0.06 TCGA-97-8174-01 8 9912116 9912116 C T MSRA Silent p.I30I 0.14 TCGA-97-8174-01 9 104432505 104432505 C G GRIN3A Missense_Mutation p.R730T 0.15 deleterious(0) probably_damaging(0.999) TCGA-97-8174-01 9 104432565 104432565 C G GRIN3A Missense_Mutation p.R710T 0.18 deleterious(0) probably_damaging(0.999) TCGA-97-8174-01 9 109746691 109746691 G T ZNF462 Splice_Site p.X2352_splice 0.21 TCGA-97-8174-01 9 123922513 123922513 G A CNTRL Silent p.K1674K 0.09 TCGA-97-8174-01 9 130420698 130420698 G C STXBP1 Missense_Mutation p.E72Q 0.10 deleterious(0) possibly_damaging(0.776) TCGA-97-8174-01 9 136279795 136279795 G C REXO4 Missense_Mutation p.P188A 0.10 tolerated(0.68) benign(0.009) TCGA-97-8174-01 9 137778319 137778319 C A FCN2 Missense_Mutation p.N201K 0.42 tolerated(0.29) benign(0.033) TCGA-97-8174-01 9 19516202 19516202 C T SLC24A2 Silent p.V645V 0.22 TCGA-97-8174-01 9 21440510 21440510 G T IFNA1 Missense_Mutation p.A2S 0.24 deleterious(0.01) benign(0.295) TCGA-97-8174-01 9 96062415 96062415 C A WNK2 Silent p.P2103P 0.28 TCGA-97-8174-01 X 100658909 100658909 C G GLA Missense_Mutation p.E87Q 0.23 tolerated(0.19) benign(0.021) TCGA-97-8174-01 X 135488054 135488054 G A GPR112 Nonsense_Mutation p.W2953* 0.45 TCGA-97-8174-01 X 150840876 150840876 G T PASD1 Missense_Mutation p.M553I 0.39 tolerated_low_confidence(0.15) benign(0.043) TCGA-97-8174-01 X 151303682 151303682 C G MAGEA10 Missense_Mutation p.K137N 0.19 deleterious(0.01) probably_damaging(0.975) TCGA-97-8174-01 X 21627589 21627589 G A CNKSR2 Missense_Mutation p.R849Q 0.23 tolerated(0.05) probably_damaging(0.999) TCGA-97-8174-01 X 47486576 47486576 C T CFP Missense_Mutation p.E244K 0.25 deleterious(0.01) possibly_damaging(0.887) TCGA-97-8174-01 X 53563335 53563339 CCTCA - HUWE1 Splice_Site p.X4142_splice 0.24 TCGA-97-8174-01 X 56591151 56591151 C T UBQLN2 Missense_Mutation p.A282V 0.07 deleterious(0.01) possibly_damaging(0.453) TCGA-97-8174-01 X 5811181 5811181 G A NLGN4X Missense_Mutation p.R710C 0.20 deleterious(0) probably_damaging(0.988) TCGA-97-8174-01 Y 5605378 5605378 G - PCDH11Y Frame_Shift_Del p.G1140Afs*43 0.42 TCGA-97-8175-01 10 13656035 13656035 A G PRPF18 Silent p.K247K 0.15 TCGA-97-8175-01 10 29821003 29821003 C A SVIL Missense_Mutation p.G646V 0.16 deleterious(0) probably_damaging(0.932) TCGA-97-8175-01 10 55955644 55955644 T C PCDH15 Silent p.E368E 0.08 TCGA-97-8175-01 11 64900484 64900484 C T SYVN1 Missense_Mutation p.R96Q 0.28 deleterious(0) possibly_damaging(0.791) TCGA-97-8175-01 11 77618829 77618829 T C INTS4 Silent p.Q650Q 0.20 TCGA-97-8175-01 11 90602322 90602322 G T MIR1261 RNA 0.15 TCGA-97-8175-01 12 102512193 102512193 A G NUP37 Missense_Mutation p.L35P 0.16 deleterious(0) probably_damaging(1) TCGA-97-8175-01 12 110765478 110765478 C A ATP2A2 Missense_Mutation p.Q251K 0.06 tolerated(0.39) benign(0.011) TCGA-97-8175-01 12 118828940 118828940 G T SUDS3 Missense_Mutation p.V124L 0.21 deleterious(0.04) benign(0.067) TCGA-97-8175-01 12 120572490 120572490 G A GCN1L1 Missense_Mutation p.T2350I 0.20 benign(0.036) TCGA-97-8175-01 12 83526233 83526233 C T TMTC2 3'UTR 0.23 TCGA-97-8175-01 16 4415016 4415016 C G CORO7 Missense_Mutation p.A296P 0.10 tolerated(0.2) probably_damaging(0.939) TCGA-97-8175-01 17 17131423 17131423 A - FLCN Frame_Shift_Del p.F10Sfs*45 0.30 TCGA-97-8175-01 17 38024506 38024506 G A ZPBP2 5'UTR 0.22 TCGA-97-8175-01 17 38449836 38449836 G A CDC6 Missense_Mutation p.M263I 0.49 tolerated(0.44) benign(0.002) TCGA-97-8175-01 17 3945846 3945846 T A ZZEF1 Missense_Mutation p.E2061D 0.23 tolerated(0.45) benign(0.002) TCGA-97-8175-01 17 56350977 56350977 C T MPO Silent p.R473R 0.18 TCGA-97-8175-01 17 56356990 56356990 G A MPO Nonsense_Mutation p.Q148* 0.15 TCGA-97-8175-01 17 7578272 7578272 G T TP53 Missense_Mutation p.H193N 0.28 deleterious(0) probably_damaging(1) TCGA-97-8175-01 19 11144113 11144113 G A SMARCA4 Missense_Mutation p.G1232S 0.13 possibly_damaging(0.797) TCGA-97-8175-01 19 22785235 22785235 C A AC011467.1 5'Flank 0.19 TCGA-97-8175-01 19 37149318 37149318 T G ZNF461 Missense_Mutation p.M7L 0.30 tolerated(0.29) benign(0.002) TCGA-97-8175-01 19 57640238 57640239 - A USP29 Frame_Shift_Ins p.R68Kfs*18 0.26 TCGA-97-8175-01 1 156884528 156884528 C T PEAR1 Missense_Mutation p.H1018Y 0.16 deleterious(0) probably_damaging(0.998) TCGA-97-8175-01 1 175067639 175067639 C T TNN Missense_Mutation p.T676I 0.08 tolerated(0.14) benign(0.047) TCGA-97-8175-01 1 23520796 23520796 C G HTR1D 5'UTR 0.14 TCGA-97-8175-01 1 7907689 7907689 A T UTS2 3'Flank 0.21 TCGA-97-8175-01 21 11039088 11039088 C A BAGE2 RNA 0.03 TCGA-97-8175-01 2 88082471 88082471 T A RGPD2 Nonsense_Mutation p.R1358* 0.24 TCGA-97-8175-01 2 97024843 97024843 G A NCAPH Missense_Mutation p.M423I 0.16 deleterious(0.05) benign(0.068) TCGA-97-8175-01 3 38044780 38044780 G A VILL Missense_Mutation p.R594Q 0.10 tolerated(0.06) benign(0.042) TCGA-97-8175-01 4 79353667 79353667 G A FRAS1 Missense_Mutation p.R1709Q 0.18 benign(0.001) TCGA-97-8175-01 5 139508162 139508162 G T IGIP Missense_Mutation p.C34F 0.14 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-97-8175-01 6 158505188 158505188 C A SYNJ2 Missense_Mutation p.Q1064K 0.09 deleterious_low_confidence(0.05) benign(0.043) TCGA-97-8175-01 6 39284197 39284197 T C KCNK16 Intron 0.19 TCGA-97-8175-01 6 43006189 43006189 C T CUL7 Missense_Mutation p.G1614D 0.18 tolerated(0.77) benign(0.005) TCGA-97-8175-01 6 49696554 49696554 G A CRISP3 Silent p.Y232Y 0.15 TCGA-97-8175-01 7 121718036 121718036 C T AASS Missense_Mutation p.D840N 0.06 tolerated(0.41) benign(0.006) TCGA-97-8175-01 8 100493868 100493868 C A VPS13B Silent p.V1236V 0.06 TCGA-97-8175-01 8 48641528 48641528 G A SPIDR Silent p.V823V 0.21 TCGA-97-8175-01 8 51465702 51465702 C A SNTG1 Missense_Mutation p.A258E 0.09 deleterious(0.04) possibly_damaging(0.796) TCGA-97-8175-01 9 134019889 134019889 C T NUP214 Missense_Mutation p.S506F 0.22 possibly_damaging(0.683) TCGA-97-8175-01 9 134019890 134019890 C G NUP214 Silent p.S506S 0.19 TCGA-97-8176-01 10 103827455 103827455 C T HPS6 Nonsense_Mutation p.Q742* 0.27 TCGA-97-8176-01 10 106918722 106918722 G T SORCS3 Nonsense_Mutation p.E568* 0.18 TCGA-97-8176-01 10 115636523 115636523 C T NHLRC2 Missense_Mutation p.S192L 0.20 deleterious(0.05) benign(0.299) TCGA-97-8176-01 10 124595810 124595810 C G CUZD1 Missense_Mutation p.E292Q 0.29 tolerated(0.61) benign(0.044) TCGA-97-8176-01 10 127843829 127843829 G A ADAM12 Silent p.D102D 0.29 TCGA-97-8176-01 10 135178173 135178173 T C ECHS1 Missense_Mutation p.T266A 0.27 tolerated(0.1) benign(0.181) TCGA-97-8176-01 10 13541911 13541911 G A BEND7 Silent p.A53A 0.36 TCGA-97-8176-01 11 108170486 108170486 C G ATM Missense_Mutation p.S1684C 0.43 deleterious(0) possibly_damaging(0.769) TCGA-97-8176-01 11 111369487 111369487 A G BTG4 Silent p.I5I 0.44 TCGA-97-8176-01 11 117165845 117165863 ACCCTGGCAATCTCAGCAT - BACE1 Splice_Site p.X184_splice 0.43 TCGA-97-8176-01 11 118896717 118896717 A G SLC37A4 Missense_Mutation p.M315T 0.60 deleterious(0) benign(0.008) TCGA-97-8176-01 11 12315474 12315474 G A MICALCL Missense_Mutation p.E166K 0.26 tolerated(0.36) benign(0.284) TCGA-97-8176-01 11 124765802 124765802 T C ROBO4 Missense_Mutation p.Q229R 0.14 tolerated(0.69) benign(0.004) TCGA-97-8176-01 11 1271930 1271930 C - MUC5B Frame_Shift_Del p.S4608Afs*30 0.14 TCGA-97-8176-01 11 1462057 1462057 C T BRSK2 Silent p.F150F 0.30 TCGA-97-8176-01 11 17124229 17124229 C G PIK3C2A Missense_Mutation p.Q1277H 0.24 deleterious(0) probably_damaging(1) TCGA-97-8176-01 11 5291026 5291026 T A HBE1 Intron 0.20 TCGA-97-8176-01 11 5530488 5530488 C T UBQLN3 Missense_Mutation p.E101K 0.21 tolerated(0.3) benign(0.045) TCGA-97-8176-01 11 55579082 55579082 C T OR5L1 Missense_Mutation p.A47V 0.26 tolerated(1) benign(0.008) TCGA-97-8176-01 11 55927292 55927292 A C OR8K5 Missense_Mutation p.F168V 0.04 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-97-8176-01 11 57193106 57193106 G A SLC43A3 Silent p.F74F 0.20 TCGA-97-8176-01 11 6232909 6232909 C T FAM160A2 Missense_Mutation p.G930S 0.23 tolerated(0.52) benign(0.069) TCGA-97-8176-01 11 9077431 9077431 C G SCUBE2 Missense_Mutation p.R372S 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-97-8176-01 11 92624096 92624096 C A FAT3 Silent p.G4529G 0.62 TCGA-97-8176-01 12 101706034 101706034 G A UTP20 Silent p.P844P 0.22 TCGA-97-8176-01 12 106633263 106633263 C A CKAP4 Missense_Mutation p.A450S 0.23 tolerated(0.29) benign(0.118) TCGA-97-8176-01 12 112667594 112667594 C T HECTD4 Missense_Mutation p.A1997T 0.24 possibly_damaging(0.464) TCGA-97-8176-01 12 120935938 120935938 T C DYNLL1 Silent p.Y65Y 0.25 TCGA-97-8176-01 12 13526240 13526240 C T C12orf36 Silent p.Q105Q 0.20 TCGA-97-8176-01 12 13716136 13716136 C T GRIN2B Missense_Mutation p.E1346K 0.09 tolerated(0.18) benign(0.039) TCGA-97-8176-01 12 25398285 25398285 C T KRAS Missense_Mutation p.G12S 0.27 deleterious(0.03) possibly_damaging(0.644) TCGA-97-8176-01 12 3127715 3127715 G A TEAD4 Nonsense_Mutation p.W163* 0.28 TCGA-97-8176-01 12 48367239 48367239 C T COL2A1 Missense_Mutation p.G1472E 0.28 unknown(0) TCGA-97-8176-01 12 49110575 49110575 T C CCNT1 5'UTR 0.36 TCGA-97-8176-01 12 50236683 50236683 G A BCDIN3D Missense_Mutation p.P63L 0.30 tolerated(0.17) possibly_damaging(0.908) TCGA-97-8176-01 12 52842748 52842748 C A KRT6B Nonsense_Mutation p.E361* 0.23 TCGA-97-8176-01 12 56631422 56631422 C T SLC39A5 Silent p.L510L 0.08 TCGA-97-8176-01 12 57994143 57994143 C G PIP4K2C Missense_Mutation p.L246V 0.12 tolerated(0.49) possibly_damaging(0.507) TCGA-97-8176-01 12 7048196 7048196 G A ATN1 Missense_Mutation p.E1024K 0.22 probably_damaging(0.987) TCGA-97-8176-01 12 71148106 71148106 G A PTPRR Intron 0.36 TCGA-97-8176-01 12 79842926 79842926 C A SYT1 3'UTR 0.17 TCGA-97-8176-01 12 95483458 95483458 G A FGD6 Missense_Mutation p.P1289S 0.31 tolerated(0.12) benign(0.067) TCGA-97-8176-01 13 111329336 111329336 C A CARS2 Missense_Mutation p.C257F 0.15 deleterious(0) probably_damaging(0.967) TCGA-97-8176-01 13 25424514 25424514 C T RNF17 Missense_Mutation p.A1046V 0.23 tolerated(0.38) probably_damaging(0.935) TCGA-97-8176-01 13 31729698 31729698 A G HSPH1 Silent p.L87L 0.13 TCGA-97-8176-01 13 52603228 52603228 A T UTP14C Silent p.S96S 0.16 TCGA-97-8176-01 13 60544092 60544092 C A DIAPH3 Missense_Mutation p.C687F 0.21 deleterious(0.01) probably_damaging(0.953) TCGA-97-8176-01 14 45654507 45654507 G C FANCM Missense_Mutation p.E1535Q 0.17 deleterious(0.02) possibly_damaging(0.666) TCGA-97-8176-01 15 30024870 30024873 TTTG - TJP1 Frame_Shift_Del p.T628Sfs*16 0.36 TCGA-97-8176-01 15 51791155 51791155 C T DMXL2 Silent p.E1422E 0.05 TCGA-97-8176-01 15 63014669 63014669 C T TLN2 Missense_Mutation p.R1037C 0.15 deleterious(0) benign(0.006) TCGA-97-8176-01 15 73022005 73022005 T A BBS4 Missense_Mutation p.Y231N 0.21 deleterious(0.04) benign(0.236) TCGA-97-8176-01 16 10862766 10862766 A T TVP23A 3'UTR 0.19 TCGA-97-8176-01 16 14342866 14342866 G T MKL2 Missense_Mutation p.L727F 0.15 deleterious(0.01) possibly_damaging(0.735) TCGA-97-8176-01 16 14342867 14342867 G T MKL2 Missense_Mutation p.A728S 0.15 tolerated(0.17) benign(0.197) TCGA-97-8176-01 16 18883831 18883831 T G SMG1 Missense_Mutation p.Y669S 0.16 deleterious(0) probably_damaging(0.986) TCGA-97-8176-01 16 22826294 22826294 C A HS3ST2 Silent p.G121G 0.48 TCGA-97-8176-01 16 27481533 27481533 G A GTF3C1 Silent p.A1570A 0.14 TCGA-97-8176-01 16 30794329 30794329 G T ZNF629 Silent p.I440I 0.29 TCGA-97-8176-01 16 69965411 69965411 G A WWP2 Splice_Site p.X508_splice 0.29 TCGA-97-8176-01 16 706454 706454 G T WDR90 Missense_Mutation p.A707S 0.17 tolerated(1) benign(0.031) TCGA-97-8176-01 17 10263332 10263332 G T MYH13 Missense_Mutation p.A197E 0.13 deleterious(0) probably_damaging(0.999) TCGA-97-8176-01 17 15449223 15449223 G - TVP23C Frame_Shift_Del p.S113Ffs*27 0.17 TCGA-97-8176-01 17 16722834 16722834 C A AC022596.6 RNA 0.20 TCGA-97-8176-01 17 18155795 18155795 C T FLII Silent p.T363T 0.20 TCGA-97-8176-01 17 18907093 18907093 G C FAM83G Missense_Mutation p.Q88E 0.21 tolerated(1) benign(0.005) TCGA-97-8176-01 17 25749148 25749148 G C TBC1D3P5 RNA 0.21 TCGA-97-8176-01 17 27895747 27895747 G T TP53I13 5'UTR 0.44 TCGA-97-8176-01 17 31107652 31107652 C T MYO1D Silent p.A82A 0.26 TCGA-97-8176-01 17 3119742 3119742 C A OR1A1 Nonsense_Mutation p.Y276* 0.20 TCGA-97-8176-01 17 39383164 39383164 C A KRTAP9-2 Nonsense_Mutation p.C86* 0.33 TCGA-97-8176-01 17 47294040 47294040 C T ABI3 Missense_Mutation p.R89C 0.20 deleterious(0.01) possibly_damaging(0.838) TCGA-97-8176-01 17 5035640 5035640 G A USP6 Intron 0.27 TCGA-97-8176-01 17 68171491 68171491 G A KCNJ2 Nonsense_Mutation p.W104* 0.23 TCGA-97-8176-01 17 72832527 72832527 G C TMEM104 Missense_Mutation p.V398L 0.19 tolerated(0.75) benign(0.001) TCGA-97-8176-01 17 76450734 76450734 G A DNAH17 Silent p.D3394D 0.18 TCGA-97-8176-01 17 80053285 80053285 A G FASN Missense_Mutation p.F64S 0.23 deleterious(0) probably_damaging(0.997) TCGA-97-8176-01 18 22807071 22807071 C A ZNF521 Nonsense_Mutation p.E271* 0.42 TCGA-97-8176-01 18 22807613 22807613 G A ZNF521 Missense_Mutation p.S90L 0.32 deleterious(0) possibly_damaging(0.629) TCGA-97-8176-01 19 10468715 10468715 C T TYK2 Missense_Mutation p.D759N 0.19 deleterious(0) probably_damaging(0.999) TCGA-97-8176-01 19 10600008 10600008 C T KEAP1 Missense_Mutation p.G523E 0.48 deleterious(0) probably_damaging(0.996) TCGA-97-8176-01 19 11132545 11132545 C T SMARCA4 Missense_Mutation p.L921F 0.26 probably_damaging(0.992) TCGA-97-8176-01 19 17895613 17895613 C G FCHO1 Nonsense_Mutation p.S769* 0.16 TCGA-97-8176-01 19 31770192 31770192 C G TSHZ3 Missense_Mutation p.Q169H 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-97-8176-01 19 36044656 36044656 C A ATP4A Missense_Mutation p.D853Y 0.46 deleterious(0) possibly_damaging(0.586) TCGA-97-8176-01 19 39898886 39898886 C G ZFP36 Silent p.G182G 0.18 TCGA-97-8176-01 19 42860128 42860128 G T MEGF8 Missense_Mutation p.A1388S 0.09 tolerated(0.19) possibly_damaging(0.839) TCGA-97-8176-01 19 43585117 43585117 C T PSG2 Missense_Mutation p.D116N 0.17 deleterious(0.02) possibly_damaging(0.897) TCGA-97-8176-01 19 44635501 44635501 C G ZNF225 Nonsense_Mutation p.S245* 0.19 TCGA-97-8176-01 19 53454016 53454016 C T ZNF816 Missense_Mutation p.E338K 0.37 deleterious(0.02) possibly_damaging(0.729) TCGA-97-8176-01 19 9076273 9076273 G A MUC16 Silent p.L3725L 0.39 TCGA-97-8176-01 1 112298676 112298676 C G DDX20 Missense_Mutation p.Q44E 0.12 deleterious(0.01) benign(0.004) TCGA-97-8176-01 1 114483824 114483824 G A HIPK1 Silent p.Q273Q 0.22 TCGA-97-8176-01 1 1235383 1235383 C A ACAP3 Silent p.L211L 0.45 TCGA-97-8176-01 1 1235384 1235384 A G ACAP3 Missense_Mutation p.L211P 0.46 deleterious(0) possibly_damaging(0.823) TCGA-97-8176-01 1 168211776 168211776 T C SFT2D2 Nonstop_Mutation p.*161Qext*64 0.18 TCGA-97-8176-01 1 193038730 193038730 A G TROVE2 Silent p.L182L 0.16 TCGA-97-8176-01 1 197053535 197053535 C G ASPM Missense_Mutation p.L3451F 0.12 deleterious(0) probably_damaging(0.999) TCGA-97-8176-01 1 201286883 201286883 G A PKP1 Missense_Mutation p.A344T 0.20 tolerated(1) benign(0) TCGA-97-8176-01 1 202568423 202568425 TCT - SYT2 In_Frame_Del p.K325del 0.10 TCGA-97-8176-01 1 203453287 203453287 T A PRELP Splice_Site p.X325_splice 0.40 TCGA-97-8176-01 1 214625225 214625225 G A PTPN14 Silent p.F89F 0.23 TCGA-97-8176-01 1 215956231 215956231 G T USH2A Silent p.A3478A 0.20 TCGA-97-8176-01 1 248458161 248458161 A G OR2T12 Silent p.S240S 0.07 TCGA-97-8176-01 1 248512285 248512285 G T OR14C36 Missense_Mutation p.C70F 0.13 deleterious(0) probably_damaging(0.949) TCGA-97-8176-01 1 248637592 248637592 T G OR2T3 Missense_Mutation p.M314R 0.06 tolerated(0.43) benign(0.001) TCGA-97-8176-01 1 248789800 248789800 G C OR2T11 Missense_Mutation p.I210M 0.06 deleterious(0.02) benign(0.395) TCGA-97-8176-01 1 36788625 36788625 C T EVA1B Missense_Mutation p.R5Q 0.32 deleterious(0.04) benign(0.026) TCGA-97-8176-01 1 36859702 36859702 C T LSM10 Missense_Mutation p.R10Q 0.21 tolerated(0.08) possibly_damaging(0.741) TCGA-97-8176-01 1 89652016 89652016 C T GBP4 Silent p.K569K 0.31 TCGA-97-8176-01 20 17437058 17437058 G T PCSK2 Missense_Mutation p.E389D 0.14 deleterious(0.01) possibly_damaging(0.702) TCGA-97-8176-01 20 17437059 17437059 G T PCSK2 Missense_Mutation p.A390S 0.15 deleterious(0) possibly_damaging(0.868) TCGA-97-8176-01 20 30345332 30345332 A G TPX2 Missense_Mutation p.N18S 0.05 deleterious(0.01) possibly_damaging(0.672) TCGA-97-8176-01 20 35128032 35128032 C T DLGAP4 Intron 0.23 TCGA-97-8176-01 20 45362400 45362400 C A SLC2A10 Missense_Mutation p.T518N 0.18 tolerated(0.52) benign(0.031) TCGA-97-8176-01 20 47591392 47591392 C T ARFGEF2 Silent p.P585P 0.23 TCGA-97-8176-01 20 53205293 53205293 C A DOK5 Silent p.I119I 0.28 TCGA-97-8176-01 20 58381109 58381109 G C PHACTR3 Silent p.R396R 0.23 TCGA-97-8176-01 20 62198235 62198235 C T HELZ2 Missense_Mutation p.E826K 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-97-8176-01 20 62319326 62319326 C T RTEL1 Silent p.I530I 0.17 TCGA-97-8176-01 20 62340199 62340199 G T ZGPAT Silent p.A89A 0.33 TCGA-97-8176-01 21 15554083 15554083 G T LIPI Silent p.S234S 0.33 TCGA-97-8176-01 21 28217255 28217255 C T ADAMTS1 Missense_Mutation p.E7K 0.10 tolerated_low_confidence(0.61) benign(0.012) TCGA-97-8176-01 21 31874354 31874354 C A KRTAP19-5 Missense_Mutation p.D19Y 0.21 deleterious_low_confidence(0.04) unknown(0) TCGA-97-8176-01 21 46925758 46925758 C T COL18A1 Missense_Mutation p.L1212F 0.35 benign(0.064) TCGA-97-8176-01 22 21066883 21066883 C T PI4KA Missense_Mutation p.C1898Y 0.17 deleterious(0) probably_damaging(0.968) TCGA-97-8176-01 22 22453327 22453327 C G IGLV8-61 Missense_Mutation p.Q25E 0.20 deleterious(0.04) benign(0.012) TCGA-97-8176-01 2 132021446 132021446 C A POTEE Silent p.T806T 0.20 TCGA-97-8176-01 2 168100900 168100900 C T XIRP2 Nonsense_Mutation p.Q1000* 0.16 TCGA-97-8176-01 2 176957890 176957890 C G HOXD13 Missense_Mutation p.S91C 0.23 deleterious(0.01) benign(0.108) TCGA-97-8176-01 2 185801588 185801588 C T ZNF804A Nonsense_Mutation p.Q489* 0.25 TCGA-97-8176-01 2 189872774 189872774 C G COL3A1 Missense_Mutation p.P1144R 0.20 unknown(0) TCGA-97-8176-01 2 225721646 225721646 G A DOCK10 Missense_Mutation p.P580L 0.31 deleterious(0) possibly_damaging(0.694) TCGA-97-8176-01 2 234652436 234652436 C T UGT1A10 Intron 0.18 TCGA-97-8176-01 2 235404667 235404667 C T ARL4C Silent p.Q188Q 0.16 TCGA-97-8176-01 2 25457243 25457243 G A DNMT3A Missense_Mutation p.R882C 0.05 deleterious(0.02) probably_damaging(0.997) TCGA-97-8176-01 2 26151773 26151773 G T KIF3C 3'UTR 0.25 TCGA-97-8176-01 2 27800981 27800981 A G C2orf16 Silent p.K514K 0.33 TCGA-97-8176-01 2 74593475 74593475 A T DCTN1 Missense_Mutation p.Y886N 0.35 tolerated(0.07) benign(0.288) TCGA-97-8176-01 2 98378573 98378573 G A TMEM131 Missense_Mutation p.P1605L 0.29 deleterious_low_confidence(0.03) possibly_damaging(0.704) TCGA-97-8176-01 3 100170641 100170641 C G LNP1 Missense_Mutation p.R79G 0.24 deleterious(0.03) benign(0.112) TCGA-97-8176-01 3 108409761 108409761 C G DZIP3 Intron 0.25 TCGA-97-8176-01 3 113172770 113172770 G A SPICE1 Missense_Mutation p.P562L 0.25 tolerated(0.25) probably_damaging(0.999) TCGA-97-8176-01 3 133653583 133653583 C T SLCO2A1 Missense_Mutation p.V636M 0.13 deleterious(0.05) possibly_damaging(0.632) TCGA-97-8176-01 3 169801905 169801905 A C GPR160 Missense_Mutation p.N49H 0.07 tolerated(0.05) benign(0.368) TCGA-97-8176-01 3 179533763 179533763 G A PEX5L Silent p.F323F 0.20 TCGA-97-8176-01 3 180328061 180328061 G T TTC14 Missense_Mutation p.V682F 0.28 tolerated_low_confidence(0.19) unknown(0) TCGA-97-8176-01 3 186334993 186334993 C A AHSG Missense_Mutation p.R143S 0.19 tolerated(0.38) possibly_damaging(0.84) TCGA-97-8176-01 3 40529119 40529119 A C ZNF619 Missense_Mutation p.E413A 0.05 tolerated(0.08) benign(0.032) TCGA-97-8176-01 3 49940721 49940721 C T MST1R Missense_Mutation p.G108S 0.17 tolerated(0.09) benign(0.031) TCGA-97-8176-01 3 52536021 52536021 G A STAB1 Splice_Site p.X111_splice 0.17 TCGA-97-8176-01 3 67054205 67054205 A T KBTBD8 Missense_Mutation p.N272Y 0.27 tolerated(0.2) benign(0) TCGA-97-8176-01 4 114278688 114278688 G T ANK2 Missense_Mutation p.V2972L 0.25 benign(0.007) TCGA-97-8176-01 4 142053999 142053999 C A RNF150 5'Flank 0.23 TCGA-97-8176-01 4 154542918 154542918 G T KIAA0922 Missense_Mutation p.W1259L 0.29 deleterious(0.02) possibly_damaging(0.856) TCGA-97-8176-01 4 178274877 178274877 T A NEIL3 Silent p.S485S 0.18 TCGA-97-8176-01 4 68829158 68829158 C T TMPRSS11A 5'UTR 0.29 TCGA-97-8176-01 5 115298371 115298371 G A AQPEP Silent p.L19L 0.21 TCGA-97-8176-01 5 115298372 115298372 G T AQPEP Missense_Mutation p.A20S 0.22 deleterious(0.02) benign(0.254) TCGA-97-8176-01 5 1217037 1217037 G A SLC6A19 Missense_Mutation p.D384N 0.23 tolerated(0.18) benign(0.19) TCGA-97-8176-01 5 127471499 127471499 A G SLC12A2 Silent p.K469K 0.25 TCGA-97-8176-01 5 140215837 140215837 C A PCDHA7 Silent p.R623R 0.17 TCGA-97-8176-01 5 148620262 148620262 C A ABLIM3 Missense_Mutation p.P410T 0.29 deleterious(0) possibly_damaging(0.732) TCGA-97-8176-01 5 169141073 169141073 C A DOCK2 Silent p.T567T 0.19 TCGA-97-8176-01 5 24509790 24509790 G T CDH10 Missense_Mutation p.P381T 0.23 deleterious(0.02) probably_damaging(0.987) TCGA-97-8176-01 5 35084642 35084642 C T PRLR Missense_Mutation p.M101I 0.07 tolerated(1) benign(0.001) TCGA-97-8176-01 5 54557208 54557208 C A DHX29 Missense_Mutation p.W1316C 0.21 deleterious(0) possibly_damaging(0.695) TCGA-97-8176-01 5 71739537 71739537 A G ZNF366 3'UTR 0.18 TCGA-97-8176-01 6 167417743 167417743 C A FGFR1OP Intron 0.11 TCGA-97-8176-01 6 28269795 28269795 C T PGBD1 Nonsense_Mutation p.Q722* 0.22 TCGA-97-8176-01 6 29231760 29231760 A G XXbac-BPG308J9.3 RNA 0.25 TCGA-97-8176-01 6 55933888 55933888 C A COL21A1 Nonsense_Mutation p.G683* 0.12 TCGA-97-8176-01 6 84563439 84563439 G C RIPPLY2 Missense_Mutation p.V41L 0.26 tolerated(0.37) benign(0.005) TCGA-97-8176-01 7 100678341 100678341 G C MUC17 Missense_Mutation p.G1215A 0.08 unknown(0) TCGA-97-8176-01 7 104782488 104782488 C G SRPK2 Missense_Mutation p.V504L 0.28 tolerated(0.61) probably_damaging(0.949) TCGA-97-8176-01 7 116339760 116339760 G T MET Missense_Mutation p.D208Y 0.27 deleterious(0.04) possibly_damaging(0.905) TCGA-97-8176-01 7 141734094 141734094 C G MGAM Missense_Mutation p.L568V 0.18 tolerated(0.09) benign(0.107) TCGA-97-8176-01 7 1785510 1785510 C G ELFN1 Silent p.L426L 0.25 TCGA-97-8176-01 7 17931229 17931229 C A SNX13 Missense_Mutation p.R86S 0.08 deleterious(0.04) benign(0.016) TCGA-97-8176-01 7 27239096 27239096 C A HOXA13 Missense_Mutation p.A201S 0.18 tolerated(0.53) unknown(0) TCGA-97-8176-01 7 66460544 66460544 C A SBDS 5'UTR 0.40 TCGA-97-8176-01 7 70239076 70239076 G T AUTS2 Missense_Mutation p.K631N 0.25 deleterious(0) probably_damaging(0.999) TCGA-97-8176-01 7 82996895 82996895 C T SEMA3E 3'UTR 0.24 TCGA-97-8176-01 8 2857522 2857522 G T CSMD1 Missense_Mutation p.L2721M 0.22 probably_damaging(0.936) TCGA-97-8176-01 8 37555443 37555443 G A ZNF703 Missense_Mutation p.V342M 0.30 tolerated(0.24) probably_damaging(0.995) TCGA-97-8176-01 8 9609263 9609263 G C TNKS Missense_Mutation p.D993H 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-97-8176-01 9 105757672 105757672 C A CYLC2 Missense_Mutation p.P4T 0.16 deleterious(0) probably_damaging(0.995) TCGA-97-8176-01 9 119976782 119976782 C A ASTN2 Silent p.L290L 0.14 TCGA-97-8176-01 9 128099631 128099631 A T GAPVD1 Missense_Mutation p.T907S 0.33 tolerated_low_confidence(0.13) benign(0.046) TCGA-97-8176-01 9 136340214 136340214 C T SLC2A6 Missense_Mutation p.E266K 0.38 deleterious(0.02) possibly_damaging(0.837) TCGA-97-8176-01 9 140005081 140005081 G A DPP7 3'UTR 0.24 TCGA-97-8176-01 9 18795510 18795510 G A ADAMTSL1 Missense_Mutation p.V1265I 0.30 tolerated(0.09) benign(0.02) TCGA-97-8176-01 9 18829843 18829843 C T ADAMTSL1 Missense_Mutation p.P1373S 0.21 tolerated(0.24) benign(0.063) TCGA-97-8176-01 9 18829862 18829862 A T ADAMTSL1 Missense_Mutation p.Q1379L 0.28 tolerated(0.22) benign(0.079) TCGA-97-8176-01 9 20789607 20789607 G T FOCAD Missense_Mutation p.Q485H 0.33 deleterious(0) possibly_damaging(0.868) TCGA-97-8176-01 9 36147803 36147803 G A GLIPR2 Missense_Mutation p.E12K 0.29 deleterious(0) benign(0.117) TCGA-97-8176-01 9 88887029 88887029 T G ISCA1 Splice_Site p.X46_splice 0.19 TCGA-97-8176-01 9 95142087 95142087 G T CENPP Silent p.L170L 0.15 TCGA-97-8176-01 X 104440393 104440393 G A IL1RAPL2 Missense_Mutation p.E107K 0.04 tolerated(0.21) possibly_damaging(0.515) TCGA-97-8176-01 X 130218912 130218912 C T ARHGAP36 Silent p.L277L 0.49 TCGA-97-8176-01 X 144904119 144904119 C A SLITRK2 Missense_Mutation p.P59H 0.12 tolerated(0.11) probably_damaging(0.986) TCGA-97-8176-01 X 153694503 153694503 G A PLXNA3 Missense_Mutation p.E897K 0.61 tolerated(0.17) benign(0.006) TCGA-97-8177-01 11 34378353 34378353 C A ABTB2 Missense_Mutation p.G260W 0.07 tolerated(0.18) possibly_damaging(0.68) TCGA-97-8177-01 12 28637039 28637039 G C CCDC91 Missense_Mutation p.E386Q 0.23 tolerated(0.07) possibly_damaging(0.882) TCGA-97-8177-01 12 569666 569666 G A B4GALNT3 Missense_Mutation p.E42K 0.19 deleterious(0.04) possibly_damaging(0.721) TCGA-97-8177-01 13 28542667 28542667 G T CDX2 Silent p.G159G 0.13 TCGA-97-8177-01 14 105414687 105414687 G A AHNAK2 Silent p.S2367S 0.03 TCGA-97-8177-01 15 102346711 102346711 C T OR4F6 Silent p.P263P 0.05 TCGA-97-8177-01 15 35083338 35083338 C A ACTC1 Missense_Mutation p.A323S 0.04 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-97-8177-01 15 42126987 42126987 G A JMJD7-PLA2G4B Silent p.P38P 0.07 TCGA-97-8177-01 15 44065388 44065388 C T ELL3 Missense_Mutation p.E374K 0.04 deleterious(0) probably_damaging(1) TCGA-97-8177-01 17 18916757 18916757 G A SLC5A10 Silent p.L355L 0.06 TCGA-97-8177-01 17 56355289 56355289 C T MPO Missense_Mutation p.R368H 0.08 tolerated(0.1) benign(0.003) TCGA-97-8177-01 17 79517622 79517622 T A C17orf70 Missense_Mutation p.N300Y 0.04 deleterious(0.02) benign(0.243) TCGA-97-8177-01 18 347278 347278 A G COLEC12 Missense_Mutation p.I115T 0.35 deleterious(0) possibly_damaging(0.84) TCGA-97-8177-01 19 9639460 9639460 C T ZNF426 Missense_Mutation p.E421K 0.08 tolerated(0.27) benign(0.026) TCGA-97-8177-01 1 155699050 155699050 G C DAP3 Missense_Mutation p.E246Q 0.04 deleterious(0) probably_damaging(0.999) TCGA-97-8177-01 1 176640151 176640151 C G PAPPA2 Missense_Mutation p.N679K 0.03 deleterious(0) probably_damaging(0.997) TCGA-97-8177-01 1 19524200 19524200 G A UBR4 Missense_Mutation p.P286L 0.09 probably_damaging(0.998) TCGA-97-8177-01 1 203743757 203743757 G T LAX1 Missense_Mutation p.G382V 0.05 tolerated(0.14) possibly_damaging(0.694) TCGA-97-8177-01 1 93301834 93301837 CAGC - RPL5 Frame_Shift_Del p.P139Vfs*24 0.12 TCGA-97-8177-01 21 38593667 38593667 T C DSCR3 3'Flank 0.04 TCGA-97-8177-01 22 39224291 39224291 C T NPTXR Splice_Site p.X284_splice 0.16 TCGA-97-8177-01 22 47022830 47022830 C T GRAMD4 Missense_Mutation p.P45L 0.20 tolerated_low_confidence(0.4) benign(0.002) TCGA-97-8177-01 2 108622615 108622615 G A SLC5A7 Missense_Mutation p.M284I 0.26 deleterious(0.01) possibly_damaging(0.771) TCGA-97-8177-01 2 131890480 131890480 T C PLEKHB2 Silent p.Y113Y 0.03 TCGA-97-8177-01 2 179733928 179733928 G A CCDC141 Silent p.H770H 0.09 TCGA-97-8177-01 2 198285796 198285796 G A SF3B1 Missense_Mutation p.A86V 0.07 deleterious(0.03) possibly_damaging(0.545) TCGA-97-8177-01 2 73675265 73675265 C T ALMS1 Silent p.L536L 0.26 TCGA-97-8177-01 2 90193232 90193232 T A IGKV1D-13 Missense_Mutation p.S53R 0.27 tolerated(0.06) benign(0.005) TCGA-97-8177-01 2 98779374 98779374 C T VWA3B Missense_Mutation p.T350M 0.05 deleterious(0.01) possibly_damaging(0.604) TCGA-97-8177-01 3 178916924 178916924 C T PIK3CA Missense_Mutation p.P104L 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-97-8177-01 4 25677815 25677815 C T SLC34A2 Missense_Mutation p.P506L 0.13 deleterious(0) probably_damaging(0.999) TCGA-97-8177-01 5 140209731 140209731 C T PCDHA6 Silent p.G685G 0.05 TCGA-97-8177-01 5 154393963 154393963 T A KIF4B Missense_Mutation p.L182I 0.21 tolerated(0.5) benign(0.015) TCGA-97-8177-01 5 70812039 70812039 A C BDP1 Missense_Mutation p.I1601L 0.06 tolerated(0.32) benign(0.005) TCGA-97-8177-01 6 110081456 110081456 C A FIG4 Silent p.R381R 0.20 TCGA-97-8177-01 6 123101489 123101489 A C FABP7 Missense_Mutation p.I43L 0.06 deleterious(0.02) probably_damaging(0.968) TCGA-97-8177-01 6 1313481 1313481 T C FOXQ1 Missense_Mutation p.L181P 0.15 tolerated(0.28) probably_damaging(0.914) TCGA-97-8177-01 6 38783304 38783304 C A DNAH8 Missense_Mutation p.L915M 0.17 possibly_damaging(0.643) TCGA-97-8177-01 6 51890704 51890704 C T PKHD1 Missense_Mutation p.V1302I 0.18 deleterious(0.05) benign(0.13) TCGA-97-8177-01 6 80878646 80878646 G - BCKDHB Frame_Shift_Del p.G178Efs*52 0.08 TCGA-97-8177-01 7 15601606 15601606 G A AGMO 5'UTR 0.12 TCGA-97-8177-01 7 16664699 16664699 T C ANKMY2 Silent p.K93K 0.31 TCGA-97-8177-01 7 27211519 27211519 C T HOXA10 Silent p.%3D 0.05 TCGA-97-8177-01 7 55259515 55259515 T G EGFR Missense_Mutation p.L858R 0.19 deleterious(0) probably_damaging(1) TCGA-97-8177-01 8 53062469 53062469 G A ST18 Silent p.D625D 0.11 TCGA-97-8177-01 X 100667389 100667389 C G HNRNPH2 Missense_Mutation p.P138R 0.04 deleterious(0.04) possibly_damaging(0.775) TCGA-97-8177-01 X 119005322 119005322 G A RNF113A Silent p.S85S 0.04 TCGA-97-8177-01 X 134166794 134166794 G A FAM127A 3'UTR 0.24 TCGA-97-8177-01 X 39923084 39923084 T A BCOR Missense_Mutation p.Q1208H 0.20 deleterious(0.04) probably_damaging(0.995) TCGA-97-8179-01 10 114154797 114154797 G C ACSL5 Silent p.L87L 0.22 TCGA-97-8179-01 10 125601968 125601968 A T CPXM2 Missense_Mutation p.W184R 0.20 deleterious(0) probably_damaging(0.994) TCGA-97-8179-01 10 18429756 18429756 C T CACNB2 Missense_Mutation p.P31S 0.30 tolerated_low_confidence(0.5) benign(0.058) TCGA-97-8179-01 10 23482674 23482674 C G PTF1A Missense_Mutation p.L276V 0.44 deleterious(0.02) unknown(0) TCGA-97-8179-01 10 27702550 27702550 C A PTCHD3 Silent p.S210S 0.46 TCGA-97-8179-01 10 58118708 58118708 C A ZWINT Nonsense_Mutation p.E161* 0.19 TCGA-97-8179-01 10 73553354 73553354 G T CDH23 5'Flank 0.21 TCGA-97-8179-01 10 73992792 73992792 G T ANAPC16 Missense_Mutation p.G84V 0.33 tolerated_low_confidence(0.06) benign(0.252) TCGA-97-8179-01 10 78647081 78647081 C A KCNMA1 Silent p.R1201R 0.36 TCGA-97-8179-01 11 105623773 105623773 C A GRIA4 Missense_Mutation p.T105N 0.58 deleterious(0) probably_damaging(0.98) TCGA-97-8179-01 11 113281276 113281276 G T DRD2 3'UTR 0.42 TCGA-97-8179-01 11 113281583 113281583 C A DRD2 Missense_Mutation p.D400Y 0.54 deleterious(0.01) benign(0.122) TCGA-97-8179-01 11 128709081 128709081 C A KCNJ1 Missense_Mutation p.G372V 0.55 deleterious(0) probably_damaging(1) TCGA-97-8179-01 11 20622919 20622919 G T SLC6A5 Missense_Mutation p.S83I 0.50 deleterious_low_confidence(0.01) benign(0.002) TCGA-97-8179-01 11 55110965 55110965 G T OR4A16 Missense_Mutation p.G97C 0.50 tolerated_low_confidence(0.08) benign(0.03) TCGA-97-8179-01 11 5842134 5842134 C A OR52N2 Missense_Mutation p.S190Y 0.53 deleterious(0) probably_damaging(0.988) TCGA-97-8179-01 11 6891778 6891778 T A OR10A2 Missense_Mutation p.Y265N 0.53 deleterious(0.01) probably_damaging(0.958) TCGA-97-8179-01 11 82443523 82443523 C A FAM181B Missense_Mutation p.A417S 0.31 tolerated_low_confidence(0.06) benign(0.082) TCGA-97-8179-01 11 85396657 85396657 C T CCDC89 Missense_Mutation p.E173K 0.52 deleterious(0.02) benign(0.04) TCGA-97-8179-01 11 99715950 99715950 C T CNTN5 Missense_Mutation p.T178I 0.52 deleterious(0.02) benign(0.047) TCGA-97-8179-01 12 25398262 25398262 C G KRAS Missense_Mutation p.L19F 0.57 deleterious(0.01) probably_damaging(0.999) TCGA-97-8179-01 12 49742765 49742765 C A DNAJC22 Missense_Mutation p.T37N 0.54 deleterious(0) probably_damaging(0.958) TCGA-97-8179-01 12 68708812 68708812 C A MDM1 Missense_Mutation p.R472M 0.49 tolerated(0.05) benign(0.026) TCGA-97-8179-01 12 81205403 81205403 G T LIN7A Missense_Mutation p.S181R 0.53 deleterious(0.04) probably_damaging(0.96) TCGA-97-8179-01 12 94975772 94975772 G T TMCC3 Silent p.A207A 0.47 TCGA-97-8179-01 13 39430379 39430379 A T FREM2 Missense_Mutation p.I2348L 0.51 tolerated(0.23) benign(0.013) TCGA-97-8179-01 13 95050778 95050778 G T GPC6 Missense_Mutation p.D450Y 0.54 deleterious(0) possibly_damaging(0.579) TCGA-97-8179-01 14 101442834 101442834 C A SNORD114-19 RNA 0.17 TCGA-97-8179-01 14 23511481 23511481 G T PSMB11 Missense_Mutation p.G16V 0.17 tolerated(0.06) benign(0.033) TCGA-97-8179-01 14 24736916 24736916 C A RABGGTA Missense_Mutation p.V435L 0.22 deleterious(0.01) benign(0.011) TCGA-97-8179-01 14 51706958 51706958 G T TMX1 5'UTR 0.19 TCGA-97-8179-01 14 75019651 75019651 G T LTBP2 Missense_Mutation p.T379N 0.27 deleterious(0) probably_damaging(0.999) TCGA-97-8179-01 14 79175811 79175811 C A NRXN3 Silent p.P118P 0.18 TCGA-97-8179-01 14 79175812 79175812 C A NRXN3 Missense_Mutation p.Q119K 0.18 tolerated(0.1) possibly_damaging(0.766) TCGA-97-8179-01 14 94069729 94069729 C A UNC79 Missense_Mutation p.A1063E 0.18 deleterious(0.01) possibly_damaging(0.83) TCGA-97-8179-01 14 95942096 95942096 C G SYNE3 Missense_Mutation p.K21N 0.19 deleterious(0) possibly_damaging(0.467) TCGA-97-8179-01 15 34640690 34640690 G T NUTM1 Missense_Mutation p.W179C 0.49 tolerated(0.1) benign(0.196) TCGA-97-8179-01 15 43814037 43814037 C T MAP1A Silent p.D122D 0.16 TCGA-97-8179-01 15 45413003 45413003 C T DUOXA1 Missense_Mutation p.G114E 0.51 deleterious(0.02) probably_damaging(0.996) TCGA-97-8179-01 15 45545486 45545486 G T SLC28A2 Nonsense_Mutation p.E25* 0.43 TCGA-97-8179-01 15 65917127 65917127 C G SLC24A1 Missense_Mutation p.L237V 0.21 benign(0) TCGA-97-8179-01 15 72050253 72050253 T G THSD4 Missense_Mutation p.C810G 0.47 deleterious(0) probably_damaging(0.998) TCGA-97-8179-01 15 75310807 75310807 G T SCAMP5 Silent p.A148A 0.53 TCGA-97-8179-01 15 80215233 80215233 C G C15orf37 Missense_Mutation p.P40A 0.21 possibly_damaging(0.728) TCGA-97-8179-01 16 258094 258094 C A LUC7L Missense_Mutation p.A117S 0.29 tolerated(0.1) possibly_damaging(0.74) TCGA-97-8179-01 16 31286930 31286930 C A ITGAM Missense_Mutation p.P307T 0.41 deleterious(0) probably_damaging(0.999) TCGA-97-8179-01 16 3406351 3406351 C T OR2C1 Silent p.N137N 0.26 TCGA-97-8179-01 16 47117175 47117175 C A NETO2 Missense_Mutation p.G512V 0.33 deleterious_low_confidence(0) benign(0.342) TCGA-97-8179-01 16 48395996 48395996 G C SIAH1 Missense_Mutation p.A146G 0.41 tolerated(0.12) benign(0.021) TCGA-97-8179-01 16 67763277 67763277 A T RANBP10 Missense_Mutation p.S420T 0.43 tolerated(0.52) benign(0.025) TCGA-97-8179-01 16 712009 712019 CGCGTGCCGGC - WDR90 Frame_Shift_Del p.R1329Lfs*9 0.41 TCGA-97-8179-01 16 72090086 72090086 T C HP Missense_Mutation p.L11P 0.30 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-97-8179-01 16 74490579 74490579 C A GLG1 Missense_Mutation p.D1114Y 0.32 tolerated(0.06) possibly_damaging(0.796) TCGA-97-8179-01 16 81194298 81194298 C T PKD1L2 RNA 0.33 TCGA-97-8179-01 16 815582 815582 G A MSLN Missense_Mutation p.V254M 0.34 deleterious(0.02) possibly_damaging(0.907) TCGA-97-8179-01 16 84778796 84778796 A T USP10 Missense_Mutation p.R237W 0.27 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-97-8179-01 16 85690012 85690012 T C GSE1 Silent p.R351R 0.18 TCGA-97-8179-01 16 90161663 90161663 C A TUBB8P7 RNA 0.28 TCGA-97-8179-01 17 10536029 10536029 C G MYH3 Missense_Mutation p.D1574H 0.60 deleterious(0) benign(0.211) TCGA-97-8179-01 17 1520021 1520021 C T SLC43A2 Missense_Mutation p.G68E 0.54 tolerated(1) benign(0) TCGA-97-8179-01 17 21319358 21319358 C A KCNJ12 Missense_Mutation p.P235Q 0.12 tolerated(0.15) probably_damaging(0.953) TCGA-97-8179-01 17 26942212 26942212 C A KIAA0100 Missense_Mutation p.G2193V 0.63 tolerated(0.06) benign(0.009) TCGA-97-8179-01 17 36916717 36916717 C T PSMB3 Silent p.A110A 0.20 TCGA-97-8179-01 17 5280435 5280435 T A RABEP1 Missense_Mutation p.Y684N 0.04 deleterious(0) probably_damaging(0.968) TCGA-97-8179-01 17 57917381 57917381 T G VMP1 3'UTR 0.14 TCGA-97-8179-01 17 7122173 7122173 C T DLG4 5'UTR 0.44 TCGA-97-8179-01 17 71394283 71394283 G C SDK2 Missense_Mutation p.P1082R 0.63 tolerated(0.11) probably_damaging(1) TCGA-97-8179-01 17 73748613 73748613 C T ITGB4 Missense_Mutation p.R1355C 0.59 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-97-8179-01 17 7577120 7577120 C A TP53 Missense_Mutation p.R273L 0.64 deleterious(0) probably_damaging(0.993) TCGA-97-8179-01 17 78261710 78261710 C T RNF213 Silent p.L120L 0.82 TCGA-97-8179-01 18 334822 334822 G A COLEC12 Missense_Mutation p.P579L 0.60 tolerated(0.31) unknown(0) TCGA-97-8179-01 18 66506039 66506039 G T CCDC102B Missense_Mutation p.G235C 0.53 tolerated(0.44) benign(0.005) TCGA-97-8179-01 19 10610109 10610109 G A KEAP1 Nonsense_Mutation p.Q201* 0.50 TCGA-97-8179-01 19 1220578 1220578 A G STK11 Splice_Site p.X200_splice 0.50 TCGA-97-8179-01 19 14827808 14827808 G T ZNF333 Missense_Mutation p.D244Y 0.50 tolerated(1) possibly_damaging(0.861) TCGA-97-8179-01 19 2877840 2877840 C T ZNF556 Missense_Mutation p.A295V 0.54 deleterious(0.04) possibly_damaging(0.734) TCGA-97-8179-01 19 36054406 36054406 C T ATP4A Silent p.V12V 0.58 TCGA-97-8179-01 19 40433530 40433530 C A FCGBP Missense_Mutation p.A247S 0.55 benign(0.152) TCGA-97-8179-01 19 42728858 42728858 G T ZNF526 Silent p.V101V 0.62 TCGA-97-8179-01 19 55481509 55481509 C T NLRP2 Silent p.I42I 0.59 TCGA-97-8179-01 19 9061927 9061927 C A MUC16 Nonsense_Mutation p.E8507* 0.54 TCGA-97-8179-01 19 9077809 9077809 C A MUC16 Nonsense_Mutation p.E3213* 0.59 TCGA-97-8179-01 1 143744408 143744408 C T RP6-206I17.1 RNA 0.10 TCGA-97-8179-01 1 148023109 148023109 T C NBPF14 Missense_Mutation p.K134R 0.13 tolerated(0.11) possibly_damaging(0.839) TCGA-97-8179-01 1 158647559 158647559 C A SPTA1 Missense_Mutation p.G293V 0.45 deleterious(0) probably_damaging(1) TCGA-97-8179-01 1 165218805 165218805 C T LMX1A Silent p.K112K 0.10 TCGA-97-8179-01 1 167095767 167095767 C A DUSP27 Missense_Mutation p.R467S 0.22 tolerated(0.06) possibly_damaging(0.63) TCGA-97-8179-01 1 176563714 176563714 T - PAPPA2 Frame_Shift_Del p.I325Tfs*23 0.31 TCGA-97-8179-01 1 196887535 196887535 A C CFHR4 Nonstop_Mutation p.*578Sext*27 0.24 TCGA-97-8179-01 1 205744038 205744038 G C RAB7L1 Missense_Mutation p.A16G 0.35 tolerated(0.15) benign(0.01) TCGA-97-8179-01 1 209797324 209797324 C T LAMB3 Silent p.Q666Q 0.22 TCGA-97-8179-01 1 220267517 220267517 G T IARS2 5'UTR 0.21 TCGA-97-8179-01 1 237586394 237586394 G T RYR2 Missense_Mutation p.W284L 0.22 probably_damaging(0.979) TCGA-97-8179-01 1 237586395 237586395 G T RYR2 Missense_Mutation p.W284C 0.22 probably_damaging(0.997) TCGA-97-8179-01 1 248436906 248436906 G T OR2T33 Missense_Mutation p.L71M 0.42 tolerated(0.06) possibly_damaging(0.903) TCGA-97-8179-01 1 25890245 25890245 C T LDLRAP1 Missense_Mutation p.P237L 0.05 tolerated(0.49) benign(0.002) TCGA-97-8179-01 1 41976690 41976690 G A HIVEP3 Missense_Mutation p.T2218I 0.49 benign(0.001) TCGA-97-8179-01 1 50885339 50885339 C A DMRTA2 Silent p.P209P 0.50 TCGA-97-8179-01 1 70477604 70477604 A T LRRC7 Nonsense_Mutation p.R339* 0.46 TCGA-97-8179-01 1 75038648 75038648 G C C1orf173 Missense_Mutation p.L916V 0.49 tolerated(1) benign(0.003) TCGA-97-8179-01 1 86916408 86916408 C A CLCA2 Missense_Mutation p.T716K 0.51 deleterious(0) benign(0.055) TCGA-97-8179-01 1 92442776 92442776 G T BRDT Missense_Mutation p.K265N 0.40 deleterious(0.02) benign(0.062) TCGA-97-8179-01 20 19955586 19955587 - A RIN2 Frame_Shift_Ins p.P358Tfs*9 0.35 TCGA-97-8179-01 20 43836170 43836170 C G SEMG1 Missense_Mutation p.Q78E 0.34 tolerated(0.16) benign(0.061) TCGA-97-8179-01 20 47768230 47768230 C A STAU1 Silent p.V133V 0.38 TCGA-97-8179-01 20 47841731 47841731 C G DDX27 Missense_Mutation p.L230V 0.33 deleterious(0.02) benign(0.443) TCGA-97-8179-01 20 50007812 50007812 T A NFATC2 3'UTR 0.27 TCGA-97-8179-01 20 54573581 54573581 C A CBLN4 3'UTR 0.37 TCGA-97-8179-01 20 55025718 55025718 C A CASS4 Missense_Mutation p.P209T 0.15 tolerated(0.33) benign(0.065) TCGA-97-8179-01 20 57607328 57607328 G C ATP5E 5'UTR 0.22 TCGA-97-8179-01 20 62174823 62174823 C A SRMS Missense_Mutation p.Q163H 0.30 tolerated(0.24) benign(0.056) TCGA-97-8179-01 21 11039057 11039057 C A BAGE2 RNA 0.07 TCGA-97-8179-01 21 31864170 31864170 C A KRTAP19-3 Missense_Mutation p.G36C 0.30 tolerated_low_confidence(0.07) unknown(0) TCGA-97-8179-01 21 35467451 35467451 G A SLC5A3 5'UTR 0.39 TCGA-97-8179-01 21 40194739 40194739 C A ETS2 Missense_Mutation p.L446I 0.27 deleterious(0) probably_damaging(0.996) TCGA-97-8179-01 22 17680454 17680454 T A CECR1 Intron 0.50 TCGA-97-8179-01 22 21384088 21384088 A T SLC7A4 Missense_Mutation p.L512Q 0.61 deleterious(0) probably_damaging(0.98) TCGA-97-8179-01 22 25753347 25753347 C A LRP5L Missense_Mutation p.A105S 0.45 tolerated(0.37) possibly_damaging(0.746) TCGA-97-8179-01 22 26422708 26422708 G C MYO18B Silent p.G2256G 0.56 TCGA-97-8179-01 22 40364276 40364276 G C GRAP2 Missense_Mutation p.Q230H 0.30 tolerated(0.1) possibly_damaging(0.789) TCGA-97-8179-01 2 103124593 103124593 C T SLC9A4 Silent p.I418I 0.19 TCGA-97-8179-01 2 109092020 109092020 G T GCC2 Nonsense_Mutation p.E964* 0.32 TCGA-97-8179-01 2 11751088 11751088 G T GREB1 Nonsense_Mutation p.E981* 0.22 TCGA-97-8179-01 2 130792746 130792746 G C FAR2P1 5'Flank 0.44 TCGA-97-8179-01 2 131519789 131519789 C A AMER3 Missense_Mutation p.H48Q 0.29 tolerated(0.31) benign(0.001) TCGA-97-8179-01 2 168114423 168114424 - C XIRP2 3'UTR 0.13 TCGA-97-8179-01 2 179404855 179404855 C T TTN Missense_Mutation p.A32680T 0.03 TCGA-97-8179-01 2 18112517 18112518 - T KCNS3 Frame_Shift_Ins p.Y83Lfs*32 0.18 TCGA-97-8179-01 2 189916108 189916108 C A COL5A2 Nonsense_Mutation p.G957* 0.37 TCGA-97-8179-01 2 198540275 198540275 C A RFTN2 5'UTR 0.24 TCGA-97-8179-01 2 198622102 198622102 C G BOLL Missense_Mutation p.G204A 0.19 tolerated(0.1) possibly_damaging(0.607) TCGA-97-8179-01 2 219563696 219563696 G T STK36 Silent p.L1143L 0.20 TCGA-97-8179-01 2 220424039 220424039 C A OBSL1 Missense_Mutation p.R1045L 0.31 tolerated(0.08) possibly_damaging(0.887) TCGA-97-8179-01 2 232389704 232389706 CTC TA NMUR1 3'UTR 0.34 TCGA-97-8179-01 2 242794798 242794798 G T PDCD1 Missense_Mutation p.S137R 0.20 deleterious(0) probably_damaging(1) TCGA-97-8179-01 2 25497957 25497957 C A DNMT3A Splice_Site p.X165_splice 0.55 TCGA-97-8179-01 2 33412037 33412037 T C LTBP1 Missense_Mutation p.V439A 0.40 tolerated(0.91) benign(0.001) TCGA-97-8179-01 2 39485694 39485694 T C MAP4K3 Silent p.Q781Q 0.46 TCGA-97-8179-01 2 44073350 44073350 C A ABCG8 Silent p.P74P 0.25 TCGA-97-8179-01 2 50463954 50463954 G T NRXN1 Silent p.G1213G 0.25 TCGA-97-8179-01 2 50464097 50464097 A T NRXN1 Missense_Mutation p.Y1166N 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-97-8179-01 2 51254727 51254727 G T NRXN1 Missense_Mutation p.L229I 0.24 tolerated(0.46) benign(0.196) TCGA-97-8179-01 2 68388900 68388900 T A PNO1 Splice_Site p.X147_splice 0.48 TCGA-97-8179-01 2 95542529 95542529 C A TEKT4 3'UTR 0.12 TCGA-97-8179-01 3 113850168 113850168 C A DRD3 Missense_Mutation p.G268V 0.52 tolerated(0.19) benign(0.005) TCGA-97-8179-01 3 13659766 13659766 T A FBLN2 Missense_Mutation p.D640E 0.49 deleterious(0) probably_damaging(0.999) TCGA-97-8179-01 3 140275464 140275464 C A CLSTN2 Missense_Mutation p.T595K 0.51 deleterious(0) probably_damaging(0.971) TCGA-97-8179-01 3 146239431 146239431 C T PLSCR1 Missense_Mutation p.C213Y 0.44 tolerated(0.45) benign(0.134) TCGA-97-8179-01 3 167761252 167761252 T G GOLIM4 Missense_Mutation p.E144D 0.53 tolerated(0.33) benign(0.101) TCGA-97-8179-01 3 196669346 196669346 C G NCBP2 Missense_Mutation p.R10P 0.67 tolerated(0.38) benign(0.019) TCGA-97-8179-01 3 49167691 49167691 C T LAMB2 Missense_Mutation p.D400N 0.44 deleterious(0.02) probably_damaging(0.981) TCGA-97-8179-01 3 65367576 65367576 C G MAGI1 Missense_Mutation p.V893L 0.46 tolerated(0.05) possibly_damaging(0.73) TCGA-97-8179-01 4 119727097 119727097 C T SEC24D Missense_Mutation p.E272K 0.49 deleterious(0.03) benign(0.289) TCGA-97-8179-01 4 138451499 138451499 G T PCDH18 Missense_Mutation p.R582S 0.24 tolerated(0.52) benign(0.006) TCGA-97-8179-01 4 143043280 143043280 C T INPP4B Splice_Site p.X712_splice 0.50 TCGA-97-8179-01 4 170384466 170384466 C G NEK1 Missense_Mutation p.V839L 0.56 deleterious(0) possibly_damaging(0.84) TCGA-97-8179-01 4 175439152 175439152 T G HPGD Missense_Mutation p.K98N 0.18 tolerated(0.25) possibly_damaging(0.462) TCGA-97-8179-01 4 187521203 187521203 C - FAT1 Frame_Shift_Del p.Q3985Rfs*5 0.39 TCGA-97-8179-01 4 30732542 30732542 T C PCDH7 Intron 0.14 TCGA-97-8179-01 4 68442941 68442941 G A STAP1 Silent p.G109G 0.38 TCGA-97-8179-01 4 7725441 7725441 C G SORCS2 Silent p.T814T 0.32 TCGA-97-8179-01 4 84368014 84368014 T C HELQ Missense_Mutation p.S456G 0.53 tolerated(0.12) benign(0.014) TCGA-97-8179-01 4 96761818 96761818 G C PDHA2 Missense_Mutation p.A173P 0.43 deleterious(0) probably_damaging(0.929) TCGA-97-8179-01 5 115827446 115827446 T A SEMA6A Silent p.A175A 0.55 TCGA-97-8179-01 5 140202447 140202447 C A PCDHA5 Missense_Mutation p.P363T 0.43 deleterious_low_confidence(0.03) benign(0.152) TCGA-97-8179-01 5 140482001 140482001 G T PCDHB3 Missense_Mutation p.V590L 0.52 deleterious_low_confidence(0.01) possibly_damaging(0.868) TCGA-97-8179-01 5 140718766 140718766 T C PCDHGA2 Silent p.A76A 0.51 TCGA-97-8179-01 5 140756074 140756074 G T PCDHGA6 Missense_Mutation p.Q808H 0.57 deleterious_low_confidence(0.01) benign(0.02) TCGA-97-8179-01 5 169812417 169812417 C A KCNMB1 Missense_Mutation p.G12V 0.40 deleterious(0) probably_damaging(1) TCGA-97-8179-01 5 76359143 76359143 C T AGGF1 3'UTR 0.52 TCGA-97-8179-01 5 79855420 79855420 G T ANKRD34B Missense_Mutation p.A140D 0.27 deleterious(0) probably_damaging(0.997) TCGA-97-8179-01 6 109962757 109962757 C A AK9 Missense_Mutation p.Q299H 0.40 tolerated(0.07) benign(0.046) TCGA-97-8179-01 6 112421892 112421892 G - FAM229B Frame_Shift_Del p.G49Efs*5 0.37 TCGA-97-8179-01 6 129759897 129759897 T A LAMA2 Silent p.A2025A 0.51 TCGA-97-8179-01 6 130762280 130762280 G T TMEM200A Missense_Mutation p.S238I 0.40 tolerated(0.28) benign(0.013) TCGA-97-8179-01 6 155123283 155123283 T C SCAF8 Splice_Site p.X261_splice 0.48 TCGA-97-8179-01 6 158454651 158454651 G A SYNJ2 Missense_Mutation p.R217H 0.54 deleterious(0.01) possibly_damaging(0.466) TCGA-97-8179-01 6 32780877 32780877 T A HLA-DOB 3'UTR 0.35 TCGA-97-8179-01 6 43096778 43096778 G T PTK7 Missense_Mutation p.R56L 0.29 tolerated(0.07) possibly_damaging(0.787) TCGA-97-8179-01 6 52876868 52876886 TTTTTCAGGTCAATCCTGC AT ICK Frame_Shift_Del p.S431Nfs*7 0.30 TCGA-97-8179-01 6 7569490 7569490 C T DSP Silent p.G497G 0.39 TCGA-97-8179-01 6 84765133 84765133 A T MRAP2 Silent p.P32P 0.52 TCGA-97-8179-01 7 106524639 106524639 G T PIK3CG Missense_Mutation p.G934C 0.37 deleterious(0) probably_damaging(1) TCGA-97-8179-01 7 135330953 135330953 A G NUP205 Missense_Mutation p.I1954V 0.35 tolerated(0.63) benign(0) TCGA-97-8179-01 7 135418867 135418867 T A FAM180A Silent p.T126T 0.33 TCGA-97-8179-01 7 136700550 136700550 G T CHRM2 Missense_Mutation p.G313V 0.37 tolerated(0.36) benign(0.005) TCGA-97-8179-01 7 141767205 141767205 G T MGAM Intron 0.70 TCGA-97-8179-01 7 141954953 141954953 C T PRSS58 Missense_Mutation p.A120T 0.36 deleterious(0.01) benign(0.179) TCGA-97-8179-01 7 143029891 143029891 C A CLCN1 Missense_Mutation p.S442R 0.30 tolerated(0.54) possibly_damaging(0.477) TCGA-97-8179-01 7 143047472 143047472 C A CLCN1 Missense_Mutation p.A804D 0.30 tolerated(0.27) possibly_damaging(0.811) TCGA-97-8179-01 7 143047473 143047473 C A CLCN1 Silent p.A804A 0.30 TCGA-97-8179-01 7 143453483 143453483 G C CTAGE6 Silent p.L423L 0.15 TCGA-97-8179-01 7 143701707 143701707 C A OR6B1 Silent p.I206I 0.29 TCGA-97-8179-01 7 143884451 143884451 G A ARHGEF35 Silent p.D342D 0.39 TCGA-97-8179-01 7 24910371 24910371 C - OSBPL3 Frame_Shift_Del p.E121Sfs*6 0.29 TCGA-97-8179-01 7 39125552 39125553 TT - POU6F2 Frame_Shift_Del p.S38Rfs*6 0.10 TCGA-97-8179-01 7 75630311 75630311 T C STYXL1 Missense_Mutation p.H236R 0.47 tolerated(0.14) benign(0) TCGA-97-8179-01 7 79764451 79764451 G C GNAI1 5'UTR 0.28 TCGA-97-8179-01 7 95439799 95439799 C G DYNC1I1 Missense_Mutation p.I68M 0.26 deleterious(0) probably_damaging(0.973) TCGA-97-8179-01 7 95616453 95616453 G T DYNC1I1 Missense_Mutation p.D294Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-97-8179-01 8 113259301 113259301 T C CSMD3 Silent p.T3390T 0.46 TCGA-97-8179-01 8 139164925 139164925 C A FAM135B Missense_Mutation p.G598V 0.25 tolerated(0.14) benign(0.01) TCGA-97-8179-01 8 141297729 141297729 C A TRAPPC9 Silent p.T751T 0.26 TCGA-97-8179-01 8 67705916 67705916 G T SGK3 5'UTR 0.35 TCGA-97-8179-01 8 87242542 87242542 C A SLC7A13 5'UTR 0.30 TCGA-97-8179-01 8 87641149 87641149 A T CNGB3 Missense_Mutation p.L493Q 0.28 deleterious(0) probably_damaging(0.98) TCGA-97-8179-01 8 88885345 88885345 C G DCAF4L2 Silent p.L285L 0.34 TCGA-97-8179-01 9 101151278 101151278 G T GABBR2 Missense_Mutation p.P463T 0.50 deleterious(0) probably_damaging(0.996) TCGA-97-8179-01 9 132985014 132985014 G T NCS1 Missense_Mutation p.M131I 0.45 deleterious(0) probably_damaging(1) TCGA-97-8179-01 9 40772742 40772742 G A ZNF658 Nonsense_Mutation p.Q845* 0.42 TCGA-97-8179-01 X 117712607 117712607 A T DOCK11 Silent p.V503V 0.09 TCGA-97-8179-01 X 125685270 125685270 A T DCAF12L1 Missense_Mutation p.M441K 0.67 deleterious(0.01) benign(0.071) TCGA-97-8179-01 X 125685341 125685341 C A DCAF12L1 Missense_Mutation p.W417C 0.60 deleterious(0.01) probably_damaging(0.91) TCGA-97-8179-01 X 148693044 148693044 T A TMEM185A Silent p.I47I 0.67 TCGA-97-8179-01 X 152087526 152087526 G C ZNF185 Splice_Site p.X144_splice 0.43 TCGA-97-8179-01 X 152958456 152958456 G A SLC6A8 Intron 0.33 TCGA-97-8179-01 X 153049528 153049528 C A SRPK3 Missense_Mutation p.P336H 0.62 tolerated(0.13) possibly_damaging(0.893) TCGA-97-8179-01 X 5821826 5821826 C A NLGN4X Missense_Mutation p.R298L 0.39 tolerated(0.15) probably_damaging(0.968) TCGA-97-8179-01 X 78011361 78011361 C A LPAR4 Missense_Mutation p.S332Y 0.68 deleterious_low_confidence(0.02) possibly_damaging(0.558) TCGA-97-8547-01 10 118960748 118960748 G C KCNK18 Missense_Mutation p.W101S 0.35 deleterious(0) probably_damaging(0.991) TCGA-97-8547-01 10 82273780 82273780 A G TSPAN14 Silent p.K194K 0.17 TCGA-97-8547-01 11 11454334 11454334 C A GALNT18 Silent p.G143G 0.15 TCGA-97-8547-01 11 118495660 118495660 G A PHLDB1 Silent p.L122L 0.31 TCGA-97-8547-01 11 118779161 118779161 G A BCL9L Missense_Mutation p.A77V 0.22 possibly_damaging(0.75) TCGA-97-8547-01 11 4929322 4929322 C T OR51A7 Silent p.V241V 0.18 TCGA-97-8547-01 11 57117340 57117340 G T P2RX3 Missense_Mutation p.A225S 0.18 deleterious(0.03) possibly_damaging(0.877) TCGA-97-8547-01 11 63419431 63419431 C T ATL3 Missense_Mutation p.E180K 0.31 deleterious(0) probably_damaging(0.999) TCGA-97-8547-01 12 2967795 2967795 G T FOXM1 3'UTR 0.21 TCGA-97-8547-01 13 111102677 111102677 G T COL4A2 Missense_Mutation p.E405D 0.13 benign(0.122) TCGA-97-8547-01 14 63735878 63735878 G A RHOJ Missense_Mutation p.A77T 0.18 deleterious(0.01) probably_damaging(0.978) TCGA-97-8547-01 15 44028609 44028609 T A RNU6-354P 5'Flank 0.17 TCGA-97-8547-01 15 75499182 75499182 G A C15orf39 Missense_Mutation p.G265R 0.15 tolerated(0.33) benign(0) TCGA-97-8547-01 15 85326889 85326889 C A ZNF592 Nonsense_Mutation p.S328* 0.23 TCGA-97-8547-01 15 85326988 85326988 C A ZNF592 Nonsense_Mutation p.S361* 0.18 TCGA-97-8547-01 16 66918476 66918476 G A PDP2 Missense_Mutation p.D97N 0.30 tolerated(0.16) benign(0.003) TCGA-97-8547-01 16 70841495 70841495 C A HYDIN Silent p.G5118G 0.20 TCGA-97-8547-01 16 70977722 70977722 C T HYDIN Missense_Mutation p.R2221Q 0.25 possibly_damaging(0.564) TCGA-97-8547-01 17 12028632 12028632 G A MAP2K4 Missense_Mutation p.A279T 0.30 tolerated(0.57) benign(0.38) TCGA-97-8547-01 17 42336615 42336615 G A SLC4A1 Silent p.F264F 0.07 TCGA-97-8547-01 17 48190283 48190284 - GCGCCGGAGCTTC SAMD14 Frame_Shift_Ins p.R438Efs*47 0.17 TCGA-97-8547-01 17 7576852 7576852 C T TP53 Splice_Site p.X331_splice 0.10 TCGA-97-8547-01 17 8045618 8045618 G A PER1 Missense_Mutation p.R1140C 0.42 deleterious(0) possibly_damaging(0.79) TCGA-97-8547-01 18 28574066 28574066 G A DSC3 3'UTR 0.15 TCGA-97-8547-01 18 333009 333009 G A COLEC12 Nonsense_Mutation p.Q651* 0.28 TCGA-97-8547-01 18 9258230 9258230 G A ANKRD12 Missense_Mutation p.M1655I 0.22 tolerated_low_confidence(0.14) benign(0.001) TCGA-97-8547-01 19 22155388 22155388 C T ZNF208 Silent p.K816K 0.21 TCGA-97-8547-01 19 51201108 51201108 C T SHANK1 Missense_Mutation p.S618N 0.14 benign(0.064) TCGA-97-8547-01 19 54930400 54930400 C T TTYH1 Silent p.P75P 0.07 TCGA-97-8547-01 19 58578256 58578256 G T ZNF135 Missense_Mutation p.W159L 0.06 tolerated(0.67) benign(0.016) TCGA-97-8547-01 19 9090640 9090640 C T MUC16 Missense_Mutation p.S392N 0.26 unknown(0) TCGA-97-8547-01 1 113253428 113253428 G A PPM1J Missense_Mutation p.H386Y 0.40 deleterious(0) possibly_damaging(0.896) TCGA-97-8547-01 1 147096575 147096575 G A BCL9 Missense_Mutation p.A1366T 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.842) TCGA-97-8547-01 1 152671463 152671463 G A LCE2A Missense_Mutation p.R29Q 0.06 tolerated_low_confidence(0.6) unknown(0) TCGA-97-8547-01 1 160321960 160321960 C T NCSTN Silent p.T320T 0.16 TCGA-97-8547-01 1 173523928 173523928 G C SLC9C2 Nonsense_Mutation p.S414* 0.21 TCGA-97-8547-01 1 48705146 48705146 C T SLC5A9 Silent p.C563C 0.23 TCGA-97-8547-01 1 68152224 68152224 G T GADD45A Missense_Mutation p.S113I 0.34 tolerated(0.07) benign(0.061) TCGA-97-8547-01 1 8073337 8073337 G A ERRFI1 Missense_Mutation p.S441L 0.04 tolerated_low_confidence(0.06) benign(0.154) TCGA-97-8547-01 20 257909 257909 G A C20orf96 Silent p.S227S 0.27 TCGA-97-8547-01 20 30253791 30253791 G A BCL2L1 Silent p.A221A 0.24 TCGA-97-8547-01 21 30701962 30701962 G A BACH1 Missense_Mutation p.R575H 0.31 deleterious(0) probably_damaging(0.999) TCGA-97-8547-01 21 45457771 45457771 C T TRAPPC10 Missense_Mutation p.T83M 0.05 deleterious(0.01) probably_damaging(0.962) TCGA-97-8547-01 22 17445664 17445664 G T GAB4 Missense_Mutation p.L490I 0.12 tolerated(0.41) benign(0) TCGA-97-8547-01 22 23523595 23523595 A G BCR Missense_Mutation p.S150G 0.19 tolerated_low_confidence(0.42) benign(0.153) TCGA-97-8547-01 2 202588118 202588118 T C ALS2 Missense_Mutation p.N1187D 0.29 tolerated(0.08) benign(0.135) TCGA-97-8547-01 2 215914373 215914373 C G ABCA12 Missense_Mutation p.E224Q 0.14 tolerated(0.08) possibly_damaging(0.893) TCGA-97-8547-01 2 241700696 241700696 C T KIF1A Missense_Mutation p.A739T 0.24 deleterious(0) possibly_damaging(0.821) TCGA-97-8547-01 2 48809093 48809093 C G STON1-GTF2A1L Missense_Mutation p.Q441E 0.21 deleterious(0.01) probably_damaging(0.994) TCGA-97-8547-01 4 104006526 104006526 C A BDH2 Missense_Mutation p.R171M 0.35 deleterious(0) probably_damaging(1) TCGA-97-8547-01 4 125592957 125592957 T C ANKRD50 Missense_Mutation p.K492R 0.05 tolerated(0.52) benign(0.017) TCGA-97-8547-01 4 84367236 84367236 G A HELQ Missense_Mutation p.H466Y 0.24 deleterious(0) probably_damaging(1) TCGA-97-8547-01 5 139876283 139876283 A T ANKHD1 Missense_Mutation p.Q808H 0.25 unknown(0) TCGA-97-8547-01 5 179545614 179545614 C T RASGEF1C Missense_Mutation p.E360K 0.20 deleterious(0) benign(0.148) TCGA-97-8547-01 5 44815046 44815046 T G MRPS30 Silent p.P354P 0.54 TCGA-97-8547-01 5 620334 620334 C T CEP72 Missense_Mutation p.R121C 0.15 deleterious(0.02) probably_damaging(1) TCGA-97-8547-01 5 86676332 86676332 G A RASA1 Silent p.L870L 0.06 TCGA-97-8547-01 5 86676333 86676333 A C RASA1 Silent p.R871R 0.06 TCGA-97-8547-01 6 106967789 106967789 A - AIM1 Frame_Shift_Del p.V496Cfs*23 0.33 TCGA-97-8547-01 6 133072369 133072369 C G VNN2 Missense_Mutation p.R372T 0.30 tolerated(0.1) benign(0.01) TCGA-97-8547-01 7 129951897 129951897 C T CPA4 Missense_Mutation p.A338V 0.30 deleterious(0.01) benign(0.296) TCGA-97-8547-01 7 146536868 146536868 C T CNTNAP2 Missense_Mutation p.R92W 0.27 deleterious(0) probably_damaging(1) TCGA-97-8547-01 7 47968954 47968954 G A PKD1L1 Missense_Mutation p.R303W 0.48 tolerated(0.2) benign(0.001) TCGA-97-8547-01 7 55242465 55242479 GGAATTAAGAGAAGC - EGFR In_Frame_Del p.E746_A750del 0.37 TCGA-97-8547-01 7 82579847 82579847 C T PCLO Missense_Mutation p.E3353K 0.12 unknown(0) TCGA-97-8547-01 8 113347573 113347574 - A CSMD3 Frame_Shift_Ins p.V2384Cfs*22 0.25 TCGA-97-8547-01 8 98943317 98943317 C T MATN2 Silent p.V93V 0.09 TCGA-97-8547-01 9 21994138 21994138 C T RP11-149I2.4 5'Flank 0.25 TCGA-97-8547-01 X 119005003 119005003 T C RNF113A Missense_Mutation p.T192A 0.31 deleterious(0) probably_damaging(0.967) TCGA-97-8547-01 X 150773199 150773199 C T PASD1 Missense_Mutation p.T37M 0.37 tolerated(0.29) benign(0.009) TCGA-97-8547-01 X 153677103 153677103 G C FAM50A Missense_Mutation p.K195N 0.05 deleterious(0) probably_damaging(0.999) TCGA-97-8547-01 X 68382833 68382833 C T PJA1 Silent p.E83E 0.32 TCGA-97-8547-01 X 69282483 69282483 G A OTUD6A Missense_Mutation p.D37N 0.31 deleterious(0) probably_damaging(1) TCGA-97-8547-01 X 92928146 92928146 C T NAP1L3 Missense_Mutation p.G53D 0.18 tolerated(0.14) benign(0) TCGA-97-8552-01 10 61835663 61835663 G A ANK3 Missense_Mutation p.P1659L 0.17 probably_damaging(0.994) TCGA-97-8552-01 12 70953187 70953187 G C PTPRB Silent p.V1550V 0.17 TCGA-97-8552-01 14 65263322 65263322 C T SPTB Missense_Mutation p.A432T 0.20 tolerated(0.15) possibly_damaging(0.872) TCGA-97-8552-01 15 35275372 35275386 ACGCTGACAAATACT - ZNF770 In_Frame_Del p.S84_R88del 0.15 TCGA-97-8552-01 15 48758035 48758035 G A FBN1 Missense_Mutation p.P1590S 0.12 probably_damaging(0.997) TCGA-97-8552-01 16 48595979 48595979 C T N4BP1 Missense_Mutation p.G192D 0.07 tolerated(0.25) benign(0.027) TCGA-97-8552-01 19 12126124 12126124 A C ZNF433 Missense_Mutation p.S520A 0.12 tolerated(0.17) possibly_damaging(0.838) TCGA-97-8552-01 19 53345048 53345048 A T ZNF468 Missense_Mutation p.S167T 0.14 tolerated(0.07) possibly_damaging(0.483) TCGA-97-8552-01 19 7688089 7688089 G C XAB2 Silent p.A402A 0.25 TCGA-97-8552-01 1 158908869 158908869 G A PYHIN1 Splice_Site p.X138_splice 0.05 TCGA-97-8552-01 1 175106087 175106087 G A TNN Silent p.R1186R 0.13 TCGA-97-8552-01 1 26900949 26900949 A G RPS6KA1 3'Flank 0.19 TCGA-97-8552-01 1 29519637 29519637 T A MECR 3'Flank 0.10 TCGA-97-8552-01 21 36079602 36079602 G A CLIC6 Missense_Mutation p.G467R 0.20 deleterious(0) probably_damaging(1) TCGA-97-8552-01 21 45820152 45820152 C T TRPM2 Missense_Mutation p.T740I 0.11 deleterious(0) probably_damaging(0.999) TCGA-97-8552-01 2 175618427 175618427 C A CHRNA1 Silent p.G219G 0.24 TCGA-97-8552-01 3 178916933 178916933 A G PIK3CA Missense_Mutation p.N107S 0.10 tolerated(0.07) possibly_damaging(0.841) TCGA-97-8552-01 3 53905380 53905380 C T ACTR8 Missense_Mutation p.M482I 0.17 tolerated(0.79) benign(0.002) TCGA-97-8552-01 3 74535706 74535706 T A CNTN3 Missense_Mutation p.I87F 0.11 tolerated(0.27) benign(0.004) TCGA-97-8552-01 4 52943076 52943076 C T SPATA18 Missense_Mutation p.A297V 0.28 tolerated(0.1) benign(0.024) TCGA-97-8552-01 5 32789927 32789927 C A NPR3 3'UTR 0.33 TCGA-97-8552-01 5 68709952 68709952 G T RAD17 Nonsense_Mutation p.E627* 0.15 TCGA-97-8552-01 6 33371133 33371133 C A KIFC1 Missense_Mutation p.A98D 0.31 deleterious(0.03) benign(0.145) TCGA-97-8552-01 6 79787827 79787827 G A PHIP 5'UTR 0.07 TCGA-97-8552-01 7 128441272 128441272 C G CCDC136 Missense_Mutation p.L127V 0.11 tolerated(0.09) benign(0.159) TCGA-97-8552-01 7 55242466 55242480 GAATTAAGAGAAGCA - EGFR In_Frame_Del p.E746_A750del 0.20 TCGA-97-8552-01 7 76825804 76825804 C G FGL2 Missense_Mutation p.C371S 0.21 deleterious(0) probably_damaging(1) TCGA-97-8552-01 8 22021462 22021462 G A SFTPC Missense_Mutation p.D168N 0.23 tolerated(0.17) benign(0.006) TCGA-97-8552-01 8 38090549 38090549 C T DDHD2 Nonsense_Mutation p.Q13* 0.20 TCGA-97-8552-01 9 96214397 96214397 G C FAM120A Missense_Mutation p.S67T 0.10 deleterious(0) possibly_damaging(0.554) TCGA-97-8552-01 X 76907621 76907621 G A ATRX Nonsense_Mutation p.R1514* 0.15 TCGA-97-A4LX-01 10 6104151 6104151 G T IL2RA 5'UTR 0.10 TCGA-97-A4LX-01 10 70404509 70404509 A G TET1 Missense_Mutation p.S675G 0.11 tolerated(0.09) benign(0.011) TCGA-97-A4LX-01 10 79571788 79571788 T A DLG5 Missense_Mutation p.T1406S 0.08 deleterious(0.02) probably_damaging(0.981) TCGA-97-A4LX-01 11 101375089 101375089 T A TRPC6 Missense_Mutation p.D204V 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-97-A4LX-01 11 118210617 118210617 G A CD3D Silent p.C93C 0.11 TCGA-97-A4LX-01 11 130284551 130284551 C T ADAMTS8 Missense_Mutation p.G481R 0.09 deleterious(0.01) possibly_damaging(0.871) TCGA-97-A4LX-01 11 17793415 17793415 C A KCNC1 Missense_Mutation p.F258L 0.06 tolerated(0.53) possibly_damaging(0.477) TCGA-97-A4LX-01 11 18587907 18587907 T A UEVLD Silent p.A160A 0.12 TCGA-97-A4LX-01 11 2356806 2356806 A C CD81-AS1 Intron 0.11 TCGA-97-A4LX-01 11 44080221 44080221 T C ACCSL Silent p.F532F 0.10 TCGA-97-A4LX-01 11 5274542 5274542 C A HBG2 Nonsense_Mutation p.G137* 0.16 TCGA-97-A4LX-01 11 55681634 55681634 T C OR5W2 Missense_Mutation p.Y142C 0.10 tolerated(0.17) benign(0.016) TCGA-97-A4LX-01 11 55905081 55905081 G T OR8J3 Silent p.T38T 0.12 TCGA-97-A4LX-01 11 58274771 58274771 T A OR5B21 Missense_Mutation p.I270L 0.05 tolerated_low_confidence(0.1) benign(0.007) TCGA-97-A4LX-01 11 71712974 71712974 G A IL18BP 3'UTR 0.12 TCGA-97-A4LX-01 11 77630019 77630019 T A INTS4 Silent p.P590P 0.10 TCGA-97-A4LX-01 12 10150970 10150970 G T CLEC1B Missense_Mutation p.A25E 0.12 tolerated(0.09) possibly_damaging(0.545) TCGA-97-A4LX-01 12 104497029 104497029 A G HCFC2 Missense_Mutation p.N786S 0.12 tolerated(1) possibly_damaging(0.527) TCGA-97-A4LX-01 12 10583758 10583758 C T KLRC2 Silent p.Q218Q 0.08 TCGA-97-A4LX-01 12 121882328 121882328 T A KDM2B Silent p.S705S 0.12 TCGA-97-A4LX-01 12 131498759 131498759 G T GPR133 Missense_Mutation p.M449I 0.10 deleterious(0.03) benign(0.007) TCGA-97-A4LX-01 12 133433133 133433133 G A CHFR Missense_Mutation p.R396W 0.09 deleterious(0) probably_damaging(0.987) TCGA-97-A4LX-01 12 27462089 27462089 A G STK38L Missense_Mutation p.M118V 0.10 deleterious(0) possibly_damaging(0.706) TCGA-97-A4LX-01 12 5022059 5022059 C G KCNA1 3'UTR 0.10 TCGA-97-A4LX-01 12 51072584 51072584 G T DIP2B Missense_Mutation p.G347C 0.07 deleterious(0) probably_damaging(0.999) TCGA-97-A4LX-01 12 5153877 5153877 G T KCNA5 Silent p.P188P 0.08 TCGA-97-A4LX-01 12 53005055 53005055 T C KRT73 Missense_Mutation p.N348S 0.09 tolerated(0.37) benign(0.032) TCGA-97-A4LX-01 12 56531108 56531108 C G ESYT1 Missense_Mutation p.A640G 0.11 tolerated(0.35) benign(0.006) TCGA-97-A4LX-01 12 60173372 60173372 C G SLC16A7 Missense_Mutation p.P450R 0.07 tolerated(0.06) benign(0.011) TCGA-97-A4LX-01 12 69968091 69968091 C T FRS2 Nonsense_Mutation p.R295* 0.06 TCGA-97-A4LX-01 12 75444636 75444636 C A KCNC2 Missense_Mutation p.L383F 0.11 tolerated(0.08) probably_damaging(0.987) TCGA-97-A4LX-01 12 75900384 75900384 T C KRR1 Silent p.V133V 0.09 TCGA-97-A4LX-01 12 93210069 93210069 T C EEA1 Silent p.A612A 0.07 TCGA-97-A4LX-01 13 32376302 32376302 A T RXFP2 Silent p.I675I 0.10 TCGA-97-A4LX-01 13 37583435 37583435 A T EXOSC8 Nonstop_Mutation p.*277Lext*16 0.19 TCGA-97-A4LX-01 13 38266311 38266311 G T TRPC4 Missense_Mutation p.S353R 0.11 deleterious(0) probably_damaging(0.975) TCGA-97-A4LX-01 13 43896589 43896589 C T ENOX1 Missense_Mutation p.E398K 0.12 deleterious(0.01) probably_damaging(0.989) TCGA-97-A4LX-01 14 20388985 20388985 G T OR4K5 Missense_Mutation p.A74S 0.06 tolerated(1) benign(0.034) TCGA-97-A4LX-01 14 23866220 23866220 C T MYH6 Missense_Mutation p.C707Y 0.10 deleterious(0.03) probably_damaging(0.962) TCGA-97-A4LX-01 14 24620756 24620756 G T RNF31 Missense_Mutation p.Q600H 0.08 tolerated(0.09) benign(0.103) TCGA-97-A4LX-01 14 52460441 52460441 T C C14orf166 Missense_Mutation p.Y63H 0.20 deleterious(0) probably_damaging(0.989) TCGA-97-A4LX-01 14 60749727 60749727 A T PPM1A Missense_Mutation p.R175S 0.09 deleterious(0.04) possibly_damaging(0.894) TCGA-97-A4LX-01 14 72090866 72090866 G T SIPA1L1 Silent p.V577V 0.14 TCGA-97-A4LX-01 14 81744537 81744537 C A STON2 Missense_Mutation p.S373I 0.15 tolerated(0.13) benign(0.201) TCGA-97-A4LX-01 14 91928502 91928502 T A SMEK1 Silent p.T672T 0.15 TCGA-97-A4LX-01 14 95562559 95562559 C A DICER1 Silent p.L1566L 0.08 TCGA-97-A4LX-01 15 25327735 25327735 G T SNORD116-18 5'Flank 0.16 TCGA-97-A4LX-01 15 25327736 25327736 G T SNORD116-18 5'Flank 0.16 TCGA-97-A4LX-01 15 28230313 28230313 G T OCA2 Silent p.R421R 0.16 TCGA-97-A4LX-01 15 42042523 42042523 G T MGA Nonsense_Mutation p.E2240* 0.15 TCGA-97-A4LX-01 15 82574554 82574554 A T FAM154B Silent p.T116T 0.14 TCGA-97-A4LX-01 15 82575165 82575165 G T FAM154B Missense_Mutation p.R320I 0.10 deleterious(0) probably_damaging(0.996) TCGA-97-A4LX-01 16 23491168 23491168 C A GGA2 Silent p.L349L 0.15 TCGA-97-A4LX-01 16 24902277 24902277 G T SLC5A11 Missense_Mutation p.G251V 0.10 tolerated(0.36) probably_damaging(1) TCGA-97-A4LX-01 16 27504602 27504602 C G GTF3C1 Missense_Mutation p.E932Q 0.08 deleterious(0.04) possibly_damaging(0.556) TCGA-97-A4LX-01 16 3075959 3075959 G A THOC6 Missense_Mutation p.E64K 0.12 tolerated(0.35) benign(0.046) TCGA-97-A4LX-01 16 55362818 55362818 G C IRX6 Missense_Mutation p.G310R 0.09 tolerated(0.08) possibly_damaging(0.72) TCGA-97-A4LX-01 16 68009843 68009843 C T DPEP3 Missense_Mutation p.S456N 0.12 tolerated(0.46) benign(0.012) TCGA-97-A4LX-01 16 72163076 72163076 T A PMFBP1 Silent p.T613T 0.07 TCGA-97-A4LX-01 16 89851301 89851301 C A FANCA Missense_Mutation p.L477F 0.04 deleterious(0) possibly_damaging(0.587) TCGA-97-A4LX-01 17 1549867 1549867 T A RILP Missense_Mutation p.T359S 0.09 tolerated(0.32) benign(0.035) TCGA-97-A4LX-01 17 38122577 38122577 G T GSDMA Silent p.V93V 0.08 TCGA-97-A4LX-01 17 5462709 5462709 G C NLRP1 Missense_Mutation p.A436G 0.12 deleterious(0) possibly_damaging(0.478) TCGA-97-A4LX-01 17 61607561 61607561 C T KCNH6 Silent p.C139C 0.10 TCGA-97-A4LX-01 17 61607856 61607856 C T KCNH6 Missense_Mutation p.H210Y 0.07 tolerated(0.23) benign(0.066) TCGA-97-A4LX-01 17 65103684 65103684 G A HELZ Silent p.S1614S 0.06 TCGA-97-A4LX-01 17 72368685 72368685 G A GPR142 Missense_Mutation p.M445I 0.10 tolerated_low_confidence(0.18) benign(0.019) TCGA-97-A4LX-01 17 72588123 72588123 C A C17orf77 Intron 0.07 TCGA-97-A4LX-01 17 7577556 7577556 C A TP53 Missense_Mutation p.C242F 0.06 deleterious(0) probably_damaging(1) TCGA-97-A4LX-01 18 12325224 12325224 G T TUBB6 Missense_Mutation p.G146C 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-97-A4LX-01 18 22805950 22805950 T A ZNF521 Silent p.T644T 0.06 TCGA-97-A4LX-01 18 22805951 22805951 G T ZNF521 Missense_Mutation p.T644K 0.06 tolerated(0.1) possibly_damaging(0.811) TCGA-97-A4LX-01 18 30093348 30093348 G C WBP11P1 RNA 0.07 TCGA-97-A4LX-01 18 63547773 63547773 C G CDH7 Missense_Mutation p.D667E 0.10 deleterious(0.01) possibly_damaging(0.866) TCGA-97-A4LX-01 19 15905624 15905624 G T OR10H5 Missense_Mutation p.A256S 0.12 deleterious(0.01) probably_damaging(1) TCGA-97-A4LX-01 19 33623311 33623311 C A WDR88 Missense_Mutation p.P79Q 0.07 tolerated(0.06) benign(0.441) TCGA-97-A4LX-01 19 40540449 40540449 T C ZNF780B Missense_Mutation p.S773G 0.12 deleterious(0.02) possibly_damaging(0.787) TCGA-97-A4LX-01 19 51330313 51330313 C A KLK15 Missense_Mutation p.R101L 0.11 tolerated(0.05) benign(0.028) TCGA-97-A4LX-01 19 57988682 57988682 C A ZNF772 5'UTR 0.10 TCGA-97-A4LX-01 19 9074569 9074569 A T MUC16 Missense_Mutation p.S4293T 0.08 unknown(0) TCGA-97-A4LX-01 1 10209326 10209326 A T UBE4B Missense_Mutation p.L892F 0.11 deleterious(0) possibly_damaging(0.596) TCGA-97-A4LX-01 1 151847163 151847163 A G THEM4 3'UTR 0.20 TCGA-97-A4LX-01 1 156873754 156873754 T A PEAR1 Silent p.A12A 0.14 TCGA-97-A4LX-01 1 158612647 158612647 G T SPTA1 Missense_Mutation p.P1521H 0.12 deleterious(0.04) probably_damaging(1) TCGA-97-A4LX-01 1 159410064 159410064 A T OR10J1 Silent p.T172T 0.14 TCGA-97-A4LX-01 1 172558600 172558600 A G SUCO Missense_Mutation p.I787V 0.14 tolerated(0.9) benign(0) TCGA-97-A4LX-01 1 173951987 173951987 C T RC3H1 Missense_Mutation p.A216T 0.09 deleterious(0) probably_damaging(0.998) TCGA-97-A4LX-01 1 175331934 175331934 C G TNR Missense_Mutation p.D907H 0.06 deleterious(0.02) probably_damaging(0.988) TCGA-97-A4LX-01 1 190067040 190067040 G T BRINP3 3'UTR 0.09 TCGA-97-A4LX-01 1 203669983 203669983 C T ATP2B4 Missense_Mutation p.S278F 0.16 deleterious(0) probably_damaging(0.999) TCGA-97-A4LX-01 1 209790914 209790914 C A LAMB3 Silent p.R1023R 0.13 TCGA-97-A4LX-01 1 209956756 209956756 C A C1orf74 Missense_Mutation p.G75V 0.13 tolerated(0.21) benign(0.232) TCGA-97-A4LX-01 1 222713400 222713400 C T HHIPL2 Missense_Mutation p.E468K 0.07 deleterious(0) probably_damaging(0.967) TCGA-97-A4LX-01 1 228474602 228474602 C G OBSCN Missense_Mutation p.R3565G 0.22 probably_damaging(0.92) TCGA-97-A4LX-01 1 228612980 228612980 G T HIST3H3 Missense_Mutation p.A16E 0.16 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-97-A4LX-01 1 232581314 232581314 C A SIPA1L2 Missense_Mutation p.R1105L 0.12 deleterious(0.03) possibly_damaging(0.838) TCGA-97-A4LX-01 1 248201638 248201638 C A OR2L2 Silent p.G23G 0.11 TCGA-97-A4LX-01 1 40236169 40236169 A G OXCT2 Silent p.A253A 0.06 TCGA-97-A4LX-01 1 46827252 46827252 C A NSUN4 Missense_Mutation p.L297I 0.10 deleterious(0.04) probably_damaging(0.944) TCGA-97-A4LX-01 1 7879479 7879479 A T PER3 Nonsense_Mutation p.R545* 0.10 TCGA-97-A4LX-01 1 84668381 84668381 G T PRKACB Missense_Mutation p.V267L 0.06 deleterious(0) probably_damaging(0.965) TCGA-97-A4LX-01 1 95001593 95001593 T A F3 Missense_Mutation p.N114Y 0.08 deleterious(0.04) benign(0.001) TCGA-97-A4LX-01 20 20079339 20079339 G T C20orf26 Missense_Mutation p.R247I 0.12 tolerated(0.09) benign(0.252) TCGA-97-A4LX-01 20 33328573 33328573 G A NCOA6 Silent p.T1829T 0.12 TCGA-97-A4LX-01 20 868992 868992 G A ANGPT4 Nonsense_Mutation p.Q186* 0.18 TCGA-97-A4LX-01 21 15537668 15537668 C A LIPI Missense_Mutation p.L280F 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-97-A4LX-01 22 29834723 29834723 G A RFPL1 5'UTR 0.07 TCGA-97-A4LX-01 2 130832687 130832687 C A POTEF Missense_Mutation p.W786C 0.11 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-97-A4LX-01 2 130832688 130832688 C A POTEF Missense_Mutation p.W786L 0.10 deleterious_low_confidence(0) benign(0.229) TCGA-97-A4LX-01 2 141777510 141777510 C A LRP1B Missense_Mutation p.V651L 0.12 benign(0.299) TCGA-97-A4LX-01 2 160035493 160035493 A G TANC1 Missense_Mutation p.I777V 0.09 tolerated(0.45) benign(0.058) TCGA-97-A4LX-01 2 164466622 164466622 C A FIGN Missense_Mutation p.A574S 0.09 deleterious(0.05) probably_damaging(0.996) TCGA-97-A4LX-01 2 176981904 176981904 A T HOXD10 Missense_Mutation p.M115L 0.09 tolerated(0.66) possibly_damaging(0.801) TCGA-97-A4LX-01 2 185800932 185800932 G T ZNF804A Missense_Mutation p.S270I 0.12 deleterious(0.02) possibly_damaging(0.451) TCGA-97-A4LX-01 2 21228400 21228400 G A APOB Silent p.A3780A 0.09 TCGA-97-A4LX-01 2 228855895 228855895 C A SPHKAP Missense_Mutation p.A1594S 0.07 tolerated(0.29) benign(0.141) TCGA-97-A4LX-01 2 238978020 238978020 G T SCLY Missense_Mutation p.S137I 0.11 tolerated(0.09) benign(0.031) TCGA-97-A4LX-01 2 46603775 46603775 G T EPAS1 Missense_Mutation p.G378C 0.11 deleterious(0.04) possibly_damaging(0.779) TCGA-97-A4LX-01 2 76975898 76975898 C A LRRTM4 Missense_Mutation p.G566C 0.09 deleterious_low_confidence(0.03) benign(0.122) TCGA-97-A4LX-01 2 76975914 76975914 G C LRRTM4 Missense_Mutation p.S560R 0.11 tolerated_low_confidence(0.38) benign(0.01) TCGA-97-A4LX-01 2 90211781 90211781 G T IGKV3D-11 Missense_Mutation p.W14C 0.10 tolerated(0.06) probably_damaging(1) TCGA-97-A4LX-01 3 100009532 100009532 A G TBC1D23 Missense_Mutation p.Y196C 0.11 deleterious(0) probably_damaging(0.953) TCGA-97-A4LX-01 3 105377761 105377761 C G CBLB 3'UTR 0.10 TCGA-97-A4LX-01 3 108474563 108474563 G T RETNLB 3'UTR 0.11 TCGA-97-A4LX-01 3 115529217 115529217 C T LSAMP Missense_Mutation p.V322I 0.10 tolerated(0.41) unknown(0) TCGA-97-A4LX-01 3 133557037 133557037 A T RAB6B Missense_Mutation p.S156R 0.06 deleterious(0.01) possibly_damaging(0.81) TCGA-97-A4LX-01 3 149089400 149089400 C G TM4SF1 Intron 0.12 TCGA-97-A4LX-01 3 151463350 151463350 C T AADACL2 Missense_Mutation p.A162V 0.11 tolerated(0.16) benign(0.02) TCGA-97-A4LX-01 3 16358277 16358277 T G RFTN1 3'UTR 0.13 TCGA-97-A4LX-01 3 164737459 164737459 T C SI Silent p.E1118E 0.06 TCGA-97-A4LX-01 3 164764801 164764801 C A SI Splice_Site p.X572_splice 0.13 TCGA-97-A4LX-01 3 179615999 179615999 G T PEX5L Silent p.A43A 0.09 TCGA-97-A4LX-01 3 183472056 183472056 A T YEATS2 Silent p.A431A 0.16 TCGA-97-A4LX-01 3 195798920 195798920 T C TFRC Missense_Mutation p.K180E 0.19 tolerated(0.27) benign(0.074) TCGA-97-A4LX-01 3 27460108 27460108 C A SLC4A7 Missense_Mutation p.A501S 0.12 deleterious(0) probably_damaging(0.999) TCGA-97-A4LX-01 3 44948575 44948575 C A TGM4 Missense_Mutation p.Q404K 0.13 tolerated(1) benign(0) TCGA-97-A4LX-01 3 47917344 47917344 T C MAP4 Missense_Mutation p.K718R 0.07 tolerated(0.14) possibly_damaging(0.878) TCGA-97-A4LX-01 3 52437782 52437782 G C BAP1 Nonsense_Mutation p.S460* 0.12 TCGA-97-A4LX-01 3 97311492 97311492 C A EPHA6 Missense_Mutation p.P808H 0.13 tolerated_low_confidence(0.16) benign(0.078) TCGA-97-A4LX-01 3 97868667 97868667 C A OR5H14 Silent p.I146I 0.07 TCGA-97-A4LX-01 4 100208112 100208112 G T ADH1A Missense_Mutation p.H52N 0.04 tolerated(0.08) benign(0.173) TCGA-97-A4LX-01 4 104510989 104510989 G T TACR3 Missense_Mutation p.N416K 0.10 tolerated(0.86) benign(0.006) TCGA-97-A4LX-01 4 114179473 114179473 G T ANK2 Missense_Mutation p.G431V 0.06 probably_damaging(0.995) TCGA-97-A4LX-01 4 126372247 126372247 G T FAT4 Missense_Mutation p.G3359V 0.11 probably_damaging(0.999) TCGA-97-A4LX-01 4 138452270 138452270 G T PCDH18 Missense_Mutation p.Q325K 0.07 deleterious(0) probably_damaging(0.999) TCGA-97-A4LX-01 4 155287387 155287387 G T DCHS2 Silent p.S223S 0.06 TCGA-97-A4LX-01 4 175688114 175688114 C A GLRA3 Missense_Mutation p.M89I 0.07 deleterious(0) probably_damaging(0.996) TCGA-97-A4LX-01 4 20714530 20714530 G T PACRGL Silent p.V162V 0.07 TCGA-97-A4LX-01 4 40339331 40339331 C T CHRNA9 Silent p.I105I 0.08 TCGA-97-A4LX-01 4 52917844 52917844 G T SPATA18 5'UTR 0.08 TCGA-97-A4LX-01 4 55970819 55970819 T A KDR Missense_Mutation p.T660S 0.19 tolerated(1) benign(0.016) TCGA-97-A4LX-01 4 70066359 70066359 C A UGT2B11 Missense_Mutation p.W463C 0.10 deleterious(0) probably_damaging(1) TCGA-97-A4LX-01 5 101834266 101834266 C T SLCO6A1 Missense_Mutation p.V95I 0.09 tolerated(0.06) benign(0.232) TCGA-97-A4LX-01 5 109159499 109159499 G T MAN2A1 Missense_Mutation p.D843Y 0.11 deleterious(0.02) benign(0.155) TCGA-97-A4LX-01 5 113831649 113831649 G T KCNN2 Nonsense_Mutation p.E504* 0.06 TCGA-97-A4LX-01 5 121405749 121405749 G T LOX Missense_Mutation p.P416T 0.07 tolerated(0.14) benign(0.395) TCGA-97-A4LX-01 5 135276812 135276812 G C FBXL21 RNA 0.09 TCGA-97-A4LX-01 5 137621514 137621514 T G CDC25C Missense_Mutation p.Q430P 0.06 tolerated(0.14) benign(0.164) TCGA-97-A4LX-01 5 138209593 138209593 C G LRRTM2 Missense_Mutation p.K219N 0.10 deleterious(0) probably_damaging(0.999) TCGA-97-A4LX-01 5 160044967 160044967 A G ATP10B Silent p.N810N 0.06 TCGA-97-A4LX-01 5 161119121 161119121 A G GABRA6 Missense_Mutation p.K334R 0.09 tolerated(0.62) benign(0.003) TCGA-97-A4LX-01 5 176047741 176047741 A T SNCB 3'UTR 0.08 TCGA-97-A4LX-01 5 24537546 24537546 C A CDH10 Nonsense_Mutation p.E157* 0.06 TCGA-97-A4LX-01 5 26906191 26906191 C A CDH9 Nonsense_Mutation p.E230* 0.14 TCGA-97-A4LX-01 5 31323352 31323352 G T CDH6 Missense_Mutation p.W770C 0.07 deleterious(0) probably_damaging(0.998) TCGA-97-A4LX-01 5 33616002 33616002 C A ADAMTS12 Missense_Mutation p.Q773H 0.07 tolerated(0.38) benign(0.285) TCGA-97-A4LX-01 5 54416314 54416314 C A CDC20B Missense_Mutation p.R427L 0.07 tolerated(0.78) benign(0.003) TCGA-97-A4LX-01 6 13588622 13588622 G T SIRT5 Missense_Mutation p.A59S 0.08 tolerated(0.05) probably_damaging(0.961) TCGA-97-A4LX-01 6 26431620 26431620 G A BTN2A3P RNA 0.10 TCGA-97-A4LX-01 6 27101068 27101068 A G HIST1H2AG Missense_Mutation p.D73G 0.13 deleterious_low_confidence(0) possibly_damaging(0.824) TCGA-97-A4LX-01 6 55924820 55924820 T C COL21A1 Silent p.L868L 0.16 TCGA-97-A4LX-01 6 84834881 84834881 C A KIAA1009 Missense_Mutation p.D1374Y 0.16 deleterious(0) probably_damaging(1) TCGA-97-A4LX-01 7 103341396 103341396 T C RELN Missense_Mutation p.K288R 0.08 tolerated(0.67) benign(0.001) TCGA-97-A4LX-01 7 120906374 120906374 G T CPED1 Missense_Mutation p.G802C 0.10 deleterious(0.02) probably_damaging(0.99) TCGA-97-A4LX-01 7 134221871 134221871 T A AKR1B10 Silent p.V207V 0.14 TCGA-97-A4LX-01 7 142561841 142561841 G C EPHB6 Missense_Mutation p.V95L 0.11 deleterious(0) benign(0.196) TCGA-97-A4LX-01 7 142920023 142920023 C T TAS2R40 Silent p.I284I 0.05 TCGA-97-A4LX-01 7 143632554 143632554 G C OR2F2 Missense_Mutation p.V77L 0.11 tolerated(0.19) benign(0.017) TCGA-97-A4LX-01 7 144320274 144320274 T G TPK1 Missense_Mutation p.E113D 0.10 tolerated(0.08) benign(0) TCGA-97-A4LX-01 7 150501929 150501929 G A TMEM176A Silent p.K227K 0.10 TCGA-97-A4LX-01 7 45145037 45145037 T A TBRG4 Intron 0.13 TCGA-97-A4LX-01 7 80430137 80430137 C A SEMA3C Missense_Mutation p.V308L 0.10 deleterious(0) benign(0.184) TCGA-97-A4LX-01 7 83636787 83636787 C A SEMA3A Missense_Mutation p.C341F 0.17 deleterious(0) probably_damaging(1) TCGA-97-A4LX-01 7 88965917 88965917 C A ZNF804B Silent p.T1207T 0.09 TCGA-97-A4LX-01 8 105361365 105361365 C A DCSTAMP Missense_Mutation p.S195R 0.21 tolerated(0.63) benign(0.004) TCGA-97-A4LX-01 8 106815450 106815450 G T ZFPM2 Missense_Mutation p.G1047V 0.21 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-97-A4LX-01 8 110980597 110980597 A T KCNV1 Missense_Mutation p.V408E 0.23 deleterious(0) possibly_damaging(0.697) TCGA-97-A4LX-01 8 116632032 116632032 C A TRPS1 Missense_Mutation p.G98V 0.25 tolerated_low_confidence(0.09) benign(0.226) TCGA-97-A4LX-01 8 121587351 121587351 G A SNTB1 Missense_Mutation p.H371Y 0.06 deleterious(0.05) benign(0.179) TCGA-97-A4LX-01 8 125131932 125131932 C A FER1L6 Silent p.I1825I 0.16 TCGA-97-A4LX-01 8 125989176 125989176 G T ZNF572 Silent p.G222G 0.18 TCGA-97-A4LX-01 8 139209823 139209823 C A FAM135B Silent p.R253R 0.24 TCGA-97-A4LX-01 8 146156419 146156419 C A ZNF16 Missense_Mutation p.S585I 0.24 tolerated(0.08) benign(0.115) TCGA-97-A4LX-01 8 41584821 41584821 C A ANK1 Nonsense_Mutation p.E158* 0.06 TCGA-97-A4LX-01 8 54714367 54714367 C T ATP6V1H Silent p.G223G 0.08 TCGA-97-A4LX-01 8 70744698 70744698 C A SLCO5A1 Nonsense_Mutation p.E71* 0.22 TCGA-97-A4LX-01 8 77768487 77768488 - A ZFHX4 Frame_Shift_Ins p.G3111Rfs*80 0.15 TCGA-97-A4LX-01 9 104238240 104238240 C A TMEM246 Missense_Mutation p.V379L 0.10 tolerated(0.18) benign(0.377) TCGA-97-A4LX-01 9 104238995 104238995 C T TMEM246 Missense_Mutation p.R127Q 0.11 tolerated(0.42) benign(0.002) TCGA-97-A4LX-01 9 106877090 106877090 A G SMC2 Missense_Mutation p.N551D 0.07 deleterious(0.02) possibly_damaging(0.847) TCGA-97-A4LX-01 9 125860076 125860076 G C RABGAP1 Missense_Mutation p.L895F 0.13 deleterious(0.01) probably_damaging(0.991) TCGA-97-A4LX-01 9 130207370 130207370 A C ZNF79 Missense_Mutation p.Q464P 0.06 deleterious(0) probably_damaging(0.973) TCGA-97-A4LX-01 9 140449607 140449607 G A DPH7 3'UTR 0.17 TCGA-97-A4LX-01 9 32784844 32784844 T C TMEM215 Silent p.Y221Y 0.07 TCGA-97-A4LX-01 9 35737761 35737761 G A GBA2 Missense_Mutation p.A830V 0.09 deleterious(0) probably_damaging(0.999) TCGA-97-A4LX-01 9 37745022 37745022 G A FRMPD1 Missense_Mutation p.G998E 0.10 deleterious_low_confidence(0.02) benign(0.125) TCGA-97-A4LX-01 9 69127026 69127026 T A PGM5P2 RNA 0.09 TCGA-97-A4LX-01 9 990334 990334 C A DMRT3 Missense_Mutation p.P250T 0.06 tolerated(0.09) probably_damaging(0.995) TCGA-97-A4LX-01 X 130222714 130222714 C G ARHGAP36 Silent p.P533P 0.18 TCGA-97-A4LX-01 X 1585173 1585173 C A P2RY8 Silent p.V93V 0.13 TCGA-97-A4LX-01 X 21755740 21755740 G C SMPX Missense_Mutation p.L70V 0.21 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-97-A4LX-01 X 26212753 26212753 C A MAGEB6 Missense_Mutation p.L264I 0.15 tolerated(0.05) probably_damaging(0.987) TCGA-97-A4LX-01 X 3239242 3239242 G T MXRA5 Missense_Mutation p.S1495Y 0.08 tolerated(1) benign(0.068) TCGA-97-A4LX-01 X 37027567 37027567 C A FAM47C Missense_Mutation p.R362S 0.23 tolerated(0.21) possibly_damaging(0.808) TCGA-97-A4LX-01 X 38024095 38024095 G T SRPX Missense_Mutation p.P194T 0.17 deleterious(0) probably_damaging(0.968) TCGA-97-A4LX-01 X 49093573 49093573 A T CCDC22 Missense_Mutation p.Q24L 0.27 tolerated(0.09) possibly_damaging(0.877) TCGA-97-A4LX-01 X 70586156 70586156 T A TAF1 5'UTR 0.07 TCGA-97-A4LX-01 X 78618173 78618173 G T ITM2A Missense_Mutation p.L153M 0.17 deleterious(0) probably_damaging(0.999) TCGA-97-A4LX-01 X 84634367 84634367 G A POF1B Silent p.H31H 0.27 TCGA-97-A4LX-01 X 86887275 86887275 G T KLHL4 Missense_Mutation p.G464C 0.09 deleterious(0) probably_damaging(1) TCGA-97-A4M0-01 10 106159223 106159223 G T CCDC147 Missense_Mutation p.G594W 0.25 deleterious(0) possibly_damaging(0.672) TCGA-97-A4M0-01 10 112266825 112266825 A T DUSP5 Missense_Mutation p.T221S 0.27 tolerated(0.08) benign(0) TCGA-97-A4M0-01 10 123730477 123730477 T C NSMCE4A Missense_Mutation p.M160V 0.27 tolerated(0.56) benign(0.145) TCGA-97-A4M0-01 10 124909220 124909220 C A HMX2 Silent p.R135R 0.48 TCGA-97-A4M0-01 10 129903176 129903176 C A MKI67 Missense_Mutation p.A2310S 0.32 tolerated(0.2) possibly_damaging(0.751) TCGA-97-A4M0-01 10 133976829 133976829 G T JAKMIP3 Missense_Mutation p.Q777H 0.24 deleterious(0.01) possibly_damaging(0.785) TCGA-97-A4M0-01 10 16562728 16562728 C T C1QL3 Missense_Mutation p.A113T 0.08 tolerated(0.56) benign(0.108) TCGA-97-A4M0-01 10 30727940 30727940 G C MAP3K8 Missense_Mutation p.D25H 0.48 tolerated_low_confidence(0.08) possibly_damaging(0.735) TCGA-97-A4M0-01 10 43015128 43015128 T A ZNF37BP RNA 0.33 TCGA-97-A4M0-01 10 50732792 50732792 G A ERCC6-PGBD3 Silent p.L228L 0.28 TCGA-97-A4M0-01 10 63957846 63957846 G C RTKN2 Missense_Mutation p.H551D 0.32 deleterious(0.03) benign(0.108) TCGA-97-A4M0-01 10 69881369 69881369 T A MYPN Missense_Mutation p.D58E 0.38 tolerated(0.17) benign(0.006) TCGA-97-A4M0-01 10 72489103 72489103 C A ADAMTS14 Silent p.L308L 0.27 TCGA-97-A4M0-01 11 1013997 1013997 G T MUC6 Silent p.V2348V 0.22 TCGA-97-A4M0-01 11 104869612 104869612 G T CASP5 Missense_Mutation p.H379N 0.38 tolerated(0.11) possibly_damaging(0.847) TCGA-97-A4M0-01 11 117308752 117308752 C A DSCAML1 Missense_Mutation p.V1491L 0.32 tolerated(0.22) benign(0.022) TCGA-97-A4M0-01 11 124294630 124294630 G C OR8B4 Missense_Mutation p.I46M 0.30 tolerated_low_confidence(0.15) benign(0.006) TCGA-97-A4M0-01 11 129817352 129817352 G A PRDM10 Intron 0.30 TCGA-97-A4M0-01 11 17517222 17517222 G A USH1C Missense_Mutation p.A850V 0.44 tolerated_low_confidence(0.47) benign(0.004) TCGA-97-A4M0-01 11 2181118 2181118 G T INS Silent p.I99I 0.47 TCGA-97-A4M0-01 11 30032405 30032405 G A KCNA4 Silent p.D607D 0.33 TCGA-97-A4M0-01 11 3712668 3712668 C A NUP98 Nonsense_Mutation p.E1455* 0.25 TCGA-97-A4M0-01 11 40136113 40136113 C A LRRC4C Missense_Mutation p.G577V 0.34 tolerated_low_confidence(0.05) benign(0.028) TCGA-97-A4M0-01 11 43333658 43333658 C T API5 5'UTR 0.20 TCGA-97-A4M0-01 11 44102567 44102567 C T ACCS Intron 0.34 TCGA-97-A4M0-01 11 55433532 55433532 A G OR4C6 Missense_Mutation p.K297R 0.41 tolerated_low_confidence(1) benign(0.002) TCGA-97-A4M0-01 11 5566403 5566403 G T OR52H1 Silent p.V117V 0.30 TCGA-97-A4M0-01 11 5776037 5776037 G T OR52N4 Nonsense_Mutation p.E23* 0.25 TCGA-97-A4M0-01 11 58979884 58979884 A G MPEG1 Missense_Mutation p.V152A 0.53 deleterious(0.02) possibly_damaging(0.771) TCGA-97-A4M0-01 11 66475140 66475140 C A SPTBN2 Missense_Mutation p.K500N 0.27 deleterious(0.05) possibly_damaging(0.907) TCGA-97-A4M0-01 11 68305259 68305259 A T PPP6R3 Nonsense_Mutation p.K43* 0.35 TCGA-97-A4M0-01 11 7111259 7111260 GA - RBMXL2 Frame_Shift_Del p.G304Rfs*59 0.24 TCGA-97-A4M0-01 11 92533533 92533533 A G FAT3 Missense_Mutation p.T2452A 0.29 benign(0.02) TCGA-97-A4M0-01 11 92577723 92577723 G C FAT3 Missense_Mutation p.E3730D 0.34 benign(0.034) TCGA-97-A4M0-01 12 100806634 100806634 G T SLC17A8 Nonsense_Mutation p.G425* 0.27 TCGA-97-A4M0-01 12 102107962 102107962 C G CHPT1 Missense_Mutation p.S123C 0.43 deleterious(0) probably_damaging(0.994) TCGA-97-A4M0-01 12 104517137 104517137 G A NFYB Missense_Mutation p.S99F 0.29 deleterious(0) probably_damaging(1) TCGA-97-A4M0-01 12 107141350 107141350 C G RFX4 Missense_Mutation p.P599R 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-97-A4M0-01 12 108145560 108145560 C A PRDM4 Missense_Mutation p.G253V 0.28 deleterious_low_confidence(0.01) benign(0.062) TCGA-97-A4M0-01 12 110032875 110032875 G T MVK Missense_Mutation p.V310L 0.32 tolerated(0.06) possibly_damaging(0.618) TCGA-97-A4M0-01 12 112926892 112926892 G T PTPN11 Missense_Mutation p.M504I 0.30 deleterious(0) probably_damaging(0.923) TCGA-97-A4M0-01 12 113382470 113382470 G A OAS3 Intron 0.32 TCGA-97-A4M0-01 12 122354268 122354268 G C PSMD9 3'UTR 0.34 TCGA-97-A4M0-01 12 122354269 122354269 G T PSMD9 3'UTR 0.33 TCGA-97-A4M0-01 12 129432001 129432001 G T GLT1D1 Nonsense_Mutation p.E180* 0.21 TCGA-97-A4M0-01 12 130926552 130926552 C G RIMBP2 Missense_Mutation p.V432L 0.28 deleterious(0) possibly_damaging(0.831) TCGA-97-A4M0-01 12 19418718 19418718 G C PLEKHA5 Silent p.L215L 0.33 TCGA-97-A4M0-01 12 25148816 25148816 T A C12orf77 Missense_Mutation p.K111M 0.35 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-97-A4M0-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.33 deleterious(0.04) probably_damaging(0.993) TCGA-97-A4M0-01 12 26636755 26636755 C A ITPR2 Missense_Mutation p.C1963F 0.28 deleterious(0) probably_damaging(0.992) TCGA-97-A4M0-01 12 27849504 27849504 G A REP15 Silent p.Q3Q 0.26 TCGA-97-A4M0-01 12 2797891 2797891 G T CACNA1C Missense_Mutation p.Q2069H 0.26 tolerated_low_confidence(0.21) benign(0.002) TCGA-97-A4M0-01 12 29598285 29598285 G T OVCH1 Missense_Mutation p.P936Q 0.28 tolerated(0.08) probably_damaging(0.964) TCGA-97-A4M0-01 12 29630155 29630155 A T OVCH1 Nonsense_Mutation p.C419* 0.28 TCGA-97-A4M0-01 12 2997491 2997491 G T RHNO1 Nonsense_Mutation p.G195* 0.33 TCGA-97-A4M0-01 12 33031968 33031968 T A PKP2 Splice_Site p.X75_splice 0.23 TCGA-97-A4M0-01 12 40077281 40077281 C T C12orf40 Silent p.N427N 0.23 TCGA-97-A4M0-01 12 44166837 44166837 G T IRAK4 Missense_Mutation p.V205L 0.19 tolerated(0.92) benign(0.002) TCGA-97-A4M0-01 12 4705765 4705765 C A DYRK4 Missense_Mutation p.Q144K 0.39 deleterious(0) probably_damaging(0.945) TCGA-97-A4M0-01 12 49444861 49444861 C T KMT2D Missense_Mutation p.E869K 0.34 unknown(0) TCGA-97-A4M0-01 12 52565300 52565300 G C KRT80 Missense_Mutation p.S414C 0.34 deleterious(0.01) benign(0.025) TCGA-97-A4M0-01 12 52913876 52913877 CC T KRT5 Frame_Shift_Del p.G70Afs*81 0.28 TCGA-97-A4M0-01 12 53073576 53073576 G A KRT1 Missense_Mutation p.S186L 0.26 deleterious(0.01) possibly_damaging(0.542) TCGA-97-A4M0-01 12 56094077 56094077 G T ITGA7 Silent p.R257R 0.24 TCGA-97-A4M0-01 12 57135255 57135255 G C PRIM1 Missense_Mutation p.L316V 0.23 deleterious(0) probably_damaging(1) TCGA-97-A4M0-01 12 58009772 58009772 C A ARHGEF25 Silent p.I503I 0.29 TCGA-97-A4M0-01 12 58140827 58140827 C A TSPAN31 Nonsense_Mutation p.C157* 0.35 TCGA-97-A4M0-01 12 62104193 62104193 G C FAM19A2 Silent p.T130T 0.36 TCGA-97-A4M0-01 12 69085777 69085777 A T NUP107 Silent p.A111A 0.31 TCGA-97-A4M0-01 12 72771791 72771791 G T TRHDE Missense_Mutation p.R357I 0.38 deleterious(0) probably_damaging(0.997) TCGA-97-A4M0-01 12 78444896 78444896 A - NAV3 Frame_Shift_Del p.S830Vfs*12 0.26 TCGA-97-A4M0-01 12 80014936 80014936 C A PAWR Nonsense_Mutation p.E190* 0.37 TCGA-97-A4M0-01 12 86373964 86373964 T A MGAT4C Silent p.P180P 0.26 TCGA-97-A4M0-01 12 97043686 97043686 A G C12orf55 Missense_Mutation p.T1570A 0.50 tolerated(0.48) benign(0.039) TCGA-97-A4M0-01 12 98995313 98995313 C T SLC25A3 3'UTR 0.41 TCGA-97-A4M0-01 13 32745389 32745389 C A FRY Missense_Mutation p.N711K 0.40 tolerated(0.49) benign(0) TCGA-97-A4M0-01 13 41902922 41902922 G T NAA16 Missense_Mutation p.D252Y 0.26 tolerated(0.06) benign(0.082) TCGA-97-A4M0-01 13 43361012 43361012 G T FAM216B Missense_Mutation p.Q71H 0.18 tolerated(0.08) benign(0.054) TCGA-97-A4M0-01 13 53608603 53608603 C G OLFM4 Missense_Mutation p.L109V 0.30 deleterious(0.02) possibly_damaging(0.696) TCGA-97-A4M0-01 14 101350948 101350949 - G RTL1 Frame_Shift_Ins p.S60Qfs*13 0.18 TCGA-97-A4M0-01 14 106452765 106452765 C A IGHV1-2 Missense_Mutation p.R86M 0.48 deleterious(0) probably_damaging(0.991) TCGA-97-A4M0-01 14 20851369 20851369 G A TEP1 Silent p.Y1337Y 0.14 TCGA-97-A4M0-01 14 22309474 22309474 G A TRAV12-1 Splice_Site p.X17_splice 0.33 TCGA-97-A4M0-01 14 22965926 22965926 C G TRAJ42 Missense_Mutation p.S19C 0.37 unknown(0) TCGA-97-A4M0-01 14 25044508 25044508 C T CTSG Missense_Mutation p.E56K 0.15 tolerated(0.31) benign(0.439) TCGA-97-A4M0-01 14 30107735 30107735 T A PRKD1 Missense_Mutation p.K315N 0.36 tolerated(0.14) possibly_damaging(0.906) TCGA-97-A4M0-01 14 53527845 53527845 T A DDHD1 Missense_Mutation p.K614M 0.14 deleterious(0.01) probably_damaging(0.995) TCGA-97-A4M0-01 14 63269075 63269075 G T KCNH5 Silent p.I598I 0.45 TCGA-97-A4M0-01 14 68046578 68046578 G A PLEKHH1 Silent p.L1056L 0.60 TCGA-97-A4M0-01 14 68157058 68157058 C A RDH11 Missense_Mutation p.A179S 0.40 deleterious(0.01) possibly_damaging(0.795) TCGA-97-A4M0-01 14 74753296 74753296 G T ABCD4 Intron 0.14 TCGA-97-A4M0-01 14 77257046 77257046 C A ANGEL1 Missense_Mutation p.R587L 0.16 tolerated(0.31) benign(0.014) TCGA-97-A4M0-01 15 101833253 101833253 C A SNRPA1 Missense_Mutation p.L69F 0.61 deleterious(0) probably_damaging(0.974) TCGA-97-A4M0-01 15 25453304 25453304 G - SNORD115-21 RNA 0.32 TCGA-97-A4M0-01 15 26812803 26812803 A T GABRB3 Missense_Mutation p.S254T 0.39 tolerated(0.07) probably_damaging(0.999) TCGA-97-A4M0-01 15 28482184 28482184 C A HERC2 Missense_Mutation p.G1310C 0.49 possibly_damaging(0.894) TCGA-97-A4M0-01 15 41476288 41476288 T C EXD1 Silent p.T462T 0.52 TCGA-97-A4M0-01 15 43724619 43724619 C T TP53BP1 Missense_Mutation p.E1150K 0.47 tolerated(0.62) benign(0.025) TCGA-97-A4M0-01 15 52011672 52011672 C A SCG3 Silent p.I452I 0.62 TCGA-97-A4M0-01 15 63922691 63922691 C T HERC1 Missense_Mutation p.A4314T 0.25 benign(0.058) TCGA-97-A4M0-01 15 73994711 73994711 C T CD276 Silent p.L65L 0.23 TCGA-97-A4M0-01 15 83805260 83805260 C T TM6SF1 Missense_Mutation p.L317F 0.28 tolerated(0.06) benign(0.21) TCGA-97-A4M0-01 15 84611767 84611767 C T ADAMTSL3 Missense_Mutation p.A808V 0.37 tolerated(0.31) benign(0.12) TCGA-97-A4M0-01 15 85664124 85664124 G A PDE8A Missense_Mutation p.A611T 0.30 deleterious(0) possibly_damaging(0.769) TCGA-97-A4M0-01 16 18851073 18851073 T C SMG1 Missense_Mutation p.K2298E 0.27 deleterious(0.01) possibly_damaging(0.78) TCGA-97-A4M0-01 16 19603178 19603178 G T C16orf62 Missense_Mutation p.D325Y 0.18 deleterious(0) probably_damaging(0.993) TCGA-97-A4M0-01 16 2155980 2155980 C - PKD1 Frame_Shift_Del p.L2584Sfs*36 0.25 TCGA-97-A4M0-01 16 2162818 2162818 C T PKD1 Silent p.L1044L 0.47 TCGA-97-A4M0-01 16 24366256 24366256 A G CACNG3 Missense_Mutation p.N133S 0.35 tolerated(0.05) benign(0.1) TCGA-97-A4M0-01 16 26147497 26147497 A T HS3ST4 Missense_Mutation p.K433N 0.35 deleterious(0) possibly_damaging(0.772) TCGA-97-A4M0-01 16 30750547 30750547 C A SRCAP Silent p.P3062P 0.31 TCGA-97-A4M0-01 16 332523 332523 C G ARHGDIG Silent p.G157G 0.35 TCGA-97-A4M0-01 16 49671819 49671819 G A ZNF423 Missense_Mutation p.S415F 0.52 tolerated(0.12) benign(0.091) TCGA-97-A4M0-01 16 56906649 56906649 C T SLC12A3 Missense_Mutation p.P349L 0.22 deleterious(0) probably_damaging(0.999) TCGA-97-A4M0-01 16 57005005 57005005 G A CETP Silent p.L196L 0.27 TCGA-97-A4M0-01 16 67943519 67943519 C T PSKH1 Silent p.I289I 0.23 TCGA-97-A4M0-01 16 67943520 67943520 C T PSKH1 Silent p.L290L 0.23 TCGA-97-A4M0-01 16 67943526 67943526 A C PSKH1 Missense_Mutation p.S292R 0.22 deleterious(0.02) probably_damaging(0.996) TCGA-97-A4M0-01 16 67943583 67943583 A C PSKH1 Silent p.R311R 0.20 TCGA-97-A4M0-01 16 67943600 67943600 C T PSKH1 Silent p.Y316Y 0.29 TCGA-97-A4M0-01 16 72820983 72820983 C A ZFHX3 3'UTR 0.52 TCGA-97-A4M0-01 16 84256134 84256134 T A KCNG4 Missense_Mutation p.T417S 0.53 deleterious(0) probably_damaging(0.997) TCGA-97-A4M0-01 16 84494344 84494344 C G ATP2C2 Missense_Mutation p.I806M 0.04 tolerated(0.11) possibly_damaging(0.595) TCGA-97-A4M0-01 17 13977669 13977669 G C COX10 Missense_Mutation p.E25Q 0.19 tolerated_low_confidence(0.11) benign(0.009) TCGA-97-A4M0-01 17 21318928 21318928 C T KCNJ12 Missense_Mutation p.L92F 0.12 deleterious(0.02) possibly_damaging(0.838) TCGA-97-A4M0-01 17 25753010 25753010 G A TBC1D3P5 RNA 0.38 TCGA-97-A4M0-01 17 26370081 26370081 T A NLK Missense_Mutation p.V61E 0.45 deleterious_low_confidence(0) benign(0.022) TCGA-97-A4M0-01 17 31324808 31324808 C A SPACA3 3'UTR 0.27 TCGA-97-A4M0-01 17 39740572 39740572 G T KRT14 Missense_Mutation p.D234E 0.39 deleterious(0) probably_damaging(0.998) TCGA-97-A4M0-01 17 40267831 40267831 C T KAT2A Missense_Mutation p.M595I 0.27 deleterious(0) probably_damaging(0.975) TCGA-97-A4M0-01 17 4684113 4684113 G T TM4SF5 Silent p.R69R 0.53 TCGA-97-A4M0-01 17 48545503 48545503 C T CHAD Silent p.L224L 0.35 TCGA-97-A4M0-01 17 51901696 51901696 G T KIF2B Missense_Mutation p.K434N 0.25 deleterious(0) probably_damaging(0.968) TCGA-97-A4M0-01 17 65740013 65740013 C T NOL11 3'UTR 0.18 TCGA-97-A4M0-01 17 73975108 73975108 G A ACOX1 Missense_Mutation p.P16L 0.47 tolerated(0.3) benign(0.022) TCGA-97-A4M0-01 17 74395732 74395732 C A UBE2O Missense_Mutation p.A476S 0.26 tolerated(0.74) benign(0.001) TCGA-97-A4M0-01 17 79424530 79424530 G T RP11-1055B8.7 Silent p.V1651V 0.64 TCGA-97-A4M0-01 18 29055693 29055693 A T DSG3 Missense_Mutation p.T824S 0.52 tolerated(0.35) benign(0.005) TCGA-97-A4M0-01 18 31263407 31263407 G T ASXL3 Nonsense_Mutation p.E252* 0.42 TCGA-97-A4M0-01 18 61322963 61322963 G T SERPINB3 Missense_Mutation p.H367Q 0.54 deleterious(0.02) possibly_damaging(0.887) TCGA-97-A4M0-01 18 61570553 61570553 G T SERPINB2 3'UTR 0.62 TCGA-97-A4M0-01 18 72178086 72178086 G A CNDP2 Missense_Mutation p.M165I 0.50 deleterious(0) probably_damaging(0.98) TCGA-97-A4M0-01 19 13346491 13346491 G C CACNA1A Missense_Mutation p.I1668M 0.28 benign(0.08) TCGA-97-A4M0-01 19 15784348 15784348 G T CYP4F12 Silent p.L3L 0.34 TCGA-97-A4M0-01 19 15838879 15838879 T A OR10H2 Missense_Mutation p.M9K 0.38 deleterious(0) benign(0.017) TCGA-97-A4M0-01 19 16222570 16222570 G A RAB8A 5'UTR 0.31 TCGA-97-A4M0-01 19 17343232 17343232 T C NR2F6 Missense_Mutation p.I382V 0.32 deleterious(0.04) possibly_damaging(0.741) TCGA-97-A4M0-01 19 19339357 19339357 G A NCAN Silent p.G976G 0.36 TCGA-97-A4M0-01 19 19371791 19371791 C A HAPLN4 Missense_Mutation p.Q105H 0.44 tolerated(0.81) possibly_damaging(0.855) TCGA-97-A4M0-01 19 22271685 22271685 G T ZNF257 Missense_Mutation p.G378V 0.36 deleterious(0) probably_damaging(0.999) TCGA-97-A4M0-01 19 22362403 22362403 C G ZNF676 3'UTR 0.67 TCGA-97-A4M0-01 19 22605150 22605150 C T ZNF98 5'Flank 0.38 TCGA-97-A4M0-01 19 36015787 36015787 C A SBSN Missense_Mutation p.A560S 0.38 deleterious(0.03) possibly_damaging(0.567) TCGA-97-A4M0-01 19 36110652 36110652 G T HAUS5 Missense_Mutation p.R466S 0.27 tolerated(1) benign(0) TCGA-97-A4M0-01 19 36211317 36211317 G T KMT2B Missense_Mutation p.K356N 0.36 unknown(0) TCGA-97-A4M0-01 19 38948217 38948217 G T RYR1 Missense_Mutation p.L624F 0.27 probably_damaging(1) TCGA-97-A4M0-01 19 38959666 38959666 G A RYR1 Missense_Mutation p.V1148I 0.05 possibly_damaging(0.67) TCGA-97-A4M0-01 19 39330790 39330790 C G AC104534.3 Missense_Mutation p.K10N 0.37 tolerated(0.08) unknown(0) TCGA-97-A4M0-01 19 39691255 39691255 G C NCCRP1 Splice_Site p.X230_splice 0.29 TCGA-97-A4M0-01 19 3984142 3984142 G C EEF2 Missense_Mutation p.I70M 0.34 deleterious(0) probably_damaging(0.999) TCGA-97-A4M0-01 19 39870704 39870704 G A SAMD4B Silent p.Q543Q 0.33 TCGA-97-A4M0-01 19 42132075 42132075 C A CEACAM4 Silent p.L108L 0.28 TCGA-97-A4M0-01 19 43429927 43429927 G T PSG7 Missense_Mutation p.S414Y 0.30 deleterious_low_confidence(0) benign(0.193) TCGA-97-A4M0-01 19 43586679 43586679 A G PSG2 Missense_Mutation p.W15R 0.38 deleterious(0.04) benign(0.007) TCGA-97-A4M0-01 19 43757667 43757667 A T PSG9 3'UTR 0.44 TCGA-97-A4M0-01 19 44981400 44981400 C T ZNF180 Missense_Mutation p.G433E 0.26 deleterious(0) probably_damaging(1) TCGA-97-A4M0-01 19 54515519 54515519 C A CACNG6 3'UTR 0.28 TCGA-97-A4M0-01 19 54603066 54603066 G A OSCAR Silent p.L15L 0.40 TCGA-97-A4M0-01 19 55250025 55250025 C G KIR2DL3 Silent p.V5V 0.42 TCGA-97-A4M0-01 19 55739909 55739909 T A AC010327.2 3'UTR 0.55 TCGA-97-A4M0-01 19 55739910 55739910 A C AC010327.2 3'UTR 0.55 TCGA-97-A4M0-01 19 6937352 6937352 A T EMR1 Missense_Mutation p.Y827F 0.29 deleterious(0.01) probably_damaging(0.917) TCGA-97-A4M0-01 19 7591450 7591450 G A MCOLN1 Silent p.T121T 0.31 TCGA-97-A4M0-01 19 7830642 7830642 G T CLEC4M Missense_Mutation p.E111D 0.32 deleterious(0.01) probably_damaging(0.977) TCGA-97-A4M0-01 19 9225933 9225933 G T OR7G1 Nonsense_Mutation p.C169* 0.32 TCGA-97-A4M0-01 1 100928221 100928221 G T CDC14A Missense_Mutation p.A208S 0.19 tolerated(0.21) benign(0.279) TCGA-97-A4M0-01 1 103377745 103377745 C A COL11A1 Missense_Mutation p.E1352D 0.29 unknown(0) TCGA-97-A4M0-01 1 108023385 108023385 G T NTNG1 Missense_Mutation p.G515C 0.42 tolerated(0.28) possibly_damaging(0.592) TCGA-97-A4M0-01 1 109742498 109742498 G A KIAA1324 Missense_Mutation p.D842N 0.26 deleterious(0.01) probably_damaging(1) TCGA-97-A4M0-01 1 110022073 110022073 G C SYPL2 Missense_Mutation p.G241A 0.31 tolerated(1) benign(0.003) TCGA-97-A4M0-01 1 112525289 112525289 C T KCND3 Missense_Mutation p.M20I 0.37 tolerated(0.1) benign(0) TCGA-97-A4M0-01 1 120464953 120464953 C A NOTCH2 Missense_Mutation p.G1707C 0.23 deleterious(0) probably_damaging(1) TCGA-97-A4M0-01 1 12383786 12383786 G A VPS13D Missense_Mutation p.E2647K 0.28 benign(0.003) TCGA-97-A4M0-01 1 12835865 12835865 G A PRAMEF12 Missense_Mutation p.G156E 0.28 tolerated(0.46) benign(0.04) TCGA-97-A4M0-01 1 1309115 1309115 C G AURKAIP1 3'UTR 0.31 TCGA-97-A4M0-01 1 145325957 145325957 G T NBPF10 Missense_Mutation p.S1277I 0.57 probably_damaging(0.991) TCGA-97-A4M0-01 1 147380739 147380739 C T GJA8 Silent p.L219L 0.49 TCGA-97-A4M0-01 1 152080426 152080426 C T TCHH Missense_Mutation p.R1756H 0.22 unknown(0) TCGA-97-A4M0-01 1 152325628 152325628 C T FLG2 Missense_Mutation p.G1545E 0.48 possibly_damaging(0.865) TCGA-97-A4M0-01 1 152975697 152975697 C A SPRR3 Silent p.T67T 0.09 TCGA-97-A4M0-01 1 152975721 152975721 C A SPRR3 Silent p.T75T 0.17 TCGA-97-A4M0-01 1 157789891 157789891 T A FCRL1 5'UTR 0.31 TCGA-97-A4M0-01 1 161018473 161018473 C T ARHGAP30 Missense_Mutation p.E780K 0.26 tolerated_low_confidence(0.14) benign(0.004) TCGA-97-A4M0-01 1 169564018 169564018 A G SELP Silent p.H733H 0.50 TCGA-97-A4M0-01 1 178412303 178412303 G T RASAL2 Missense_Mutation p.R474I 0.45 deleterious(0) benign(0.43) TCGA-97-A4M0-01 1 180166253 180166253 C A QSOX1 3'UTR 0.33 TCGA-97-A4M0-01 1 1849326 1849326 G A TMEM52 Missense_Mutation p.P209S 0.28 deleterious_low_confidence(0) benign(0.108) TCGA-97-A4M0-01 1 196697568 196697568 A T CFH Missense_Mutation p.I777L 0.49 tolerated(0.36) benign(0.014) TCGA-97-A4M0-01 1 197390929 197390929 C A CRB1 Missense_Mutation p.N657K 0.36 deleterious(0.04) possibly_damaging(0.616) TCGA-97-A4M0-01 1 197396695 197396695 A T CRB1 Missense_Mutation p.Q747L 0.14 deleterious(0.01) benign(0.122) TCGA-97-A4M0-01 1 201437669 201437669 C G PHLDA3 Missense_Mutation p.E82D 0.30 deleterious(0.03) probably_damaging(0.978) TCGA-97-A4M0-01 1 201781726 201781726 C T NAV1 Missense_Mutation p.P1720S 0.45 deleterious(0) probably_damaging(1) TCGA-97-A4M0-01 1 202912948 202912948 G T ADIPOR1 Missense_Mutation p.S248Y 0.22 deleterious(0.02) benign(0.361) TCGA-97-A4M0-01 1 216074181 216074181 G C USH2A Missense_Mutation p.S2456C 0.48 probably_damaging(0.951) TCGA-97-A4M0-01 1 219347247 219347247 G C LYPLAL1 Silent p.S5S 0.49 TCGA-97-A4M0-01 1 220791827 220791827 T AG MARK1 Frame_Shift_Ins p.L243Qfs*43 0.19 TCGA-97-A4M0-01 1 224475615 224475615 T C NVL Silent p.E552E 0.22 TCGA-97-A4M0-01 1 227921791 227921791 C T SNAP47 5'Flank 0.41 TCGA-97-A4M0-01 1 228432200 228432200 G T OBSCN Missense_Mutation p.G1229C 0.24 probably_damaging(0.978) TCGA-97-A4M0-01 1 228612814 228612814 C T HIST3H3 Silent p.L71L 0.51 TCGA-97-A4M0-01 1 236925893 236925893 G T ACTN2 Missense_Mutation p.A887S 0.47 tolerated(0.21) probably_damaging(0.999) TCGA-97-A4M0-01 1 23697872 23697872 C G C1orf213 3'UTR 0.38 TCGA-97-A4M0-01 1 237580373 237580373 T C RYR2 Silent p.A266A 0.22 TCGA-97-A4M0-01 1 237841400 237841400 G A RYR2 Silent p.K2961K 0.26 TCGA-97-A4M0-01 1 241886720 241886720 C A WDR64 Silent p.V382V 0.22 TCGA-97-A4M0-01 1 24433712 24433712 G A MYOM3 Silent p.L85L 0.38 TCGA-97-A4M0-01 1 244816500 244816500 G C DESI2 5'UTR 0.56 TCGA-97-A4M0-01 1 247597517 247597517 G T NLRP3 Nonsense_Mutation p.G814* 0.51 TCGA-97-A4M0-01 1 247751947 247751947 G T OR2G2 Missense_Mutation p.A96S 0.23 tolerated(1) benign(0.001) TCGA-97-A4M0-01 1 248028073 248028073 C T TRIM58 Nonsense_Mutation p.Q195* 0.48 TCGA-97-A4M0-01 1 248084415 248084415 C T OR2T8 Silent p.I32I 0.20 TCGA-97-A4M0-01 1 248112419 248112419 G T OR2L8 Missense_Mutation p.G87V 0.47 deleterious(0.01) benign(0.383) TCGA-97-A4M0-01 1 248112691 248112691 T C OR2L8 Missense_Mutation p.C178R 0.37 deleterious(0) probably_damaging(0.969) TCGA-97-A4M0-01 1 249111042 249111042 G C SH3BP5L Missense_Mutation p.N75K 0.21 deleterious(0) probably_damaging(0.999) TCGA-97-A4M0-01 1 26514729 26514729 G T CNKSR1 Missense_Mutation p.V487L 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-97-A4M0-01 1 28339624 28339624 G C EYA3 Missense_Mutation p.S256C 0.29 deleterious(0.02) possibly_damaging(0.823) TCGA-97-A4M0-01 1 43805161 43805161 C T MPL Missense_Mutation p.S204F 0.32 deleterious(0.03) benign(0.071) TCGA-97-A4M0-01 1 45213104 45213104 C T KIF2C Missense_Mutation p.L72F 0.23 tolerated(0.11) benign(0.008) TCGA-97-A4M0-01 1 46087339 46087339 G A CCDC17 Silent p.D385D 0.12 TCGA-97-A4M0-01 1 64644201 64644201 C T ROR1 Missense_Mutation p.P826L 0.45 deleterious(0) benign(0.073) TCGA-97-A4M0-01 1 67861257 67861257 C T IL12RB2 Missense_Mutation p.L692F 0.09 tolerated(0.32) benign(0.02) TCGA-97-A4M0-01 1 70504402 70504402 A T LRRC7 Missense_Mutation p.K927N 0.35 deleterious(0) benign(0.384) TCGA-97-A4M0-01 1 75055450 75055450 C G C1orf173 Missense_Mutation p.A681P 0.30 deleterious(0.01) probably_damaging(0.982) TCGA-97-A4M0-01 1 75078447 75078447 A C C1orf173 Missense_Mutation p.S349R 0.23 deleterious(0) probably_damaging(1) TCGA-97-A4M0-01 1 76254929 76254929 T C RABGGTB Missense_Mutation p.M66T 0.15 tolerated(0.05) benign(0.042) TCGA-97-A4M0-01 1 78429954 78429954 T A FUBP1 Missense_Mutation p.I309F 0.24 deleterious(0) probably_damaging(0.995) TCGA-97-A4M0-01 1 79357263 79357263 G A ELTD1 Silent p.S652S 0.33 TCGA-97-A4M0-01 1 89654383 89654383 T A GBP4 Missense_Mutation p.H431L 0.30 deleterious(0.01) benign(0.001) TCGA-97-A4M0-01 1 92446921 92446921 G T BRDT Missense_Mutation p.R616I 0.28 deleterious(0.04) benign(0.091) TCGA-97-A4M0-01 20 17462810 17462810 C T PCSK2 3'UTR 0.27 TCGA-97-A4M0-01 20 23065923 23065923 G T CD93 Silent p.R303R 0.23 TCGA-97-A4M0-01 20 2413300 2413300 G A TGM6 3'UTR 0.32 TCGA-97-A4M0-01 20 24949626 24949626 C A APMAP Missense_Mutation p.G315W 0.28 deleterious(0) probably_damaging(0.997) TCGA-97-A4M0-01 20 30584930 30584930 G C XKR7 Silent p.T470T 0.35 TCGA-97-A4M0-01 20 3171461 3171461 C A DDRGK1 Silent p.V261V 0.25 TCGA-97-A4M0-01 20 33077155 33077155 G A ITCH Silent p.Q767Q 0.35 TCGA-97-A4M0-01 20 37214709 37214709 G T ADIG Missense_Mutation p.W54C 0.33 deleterious(0) probably_damaging(0.948) TCGA-97-A4M0-01 20 51872008 51872008 G C TSHZ2 Missense_Mutation p.E671Q 0.36 tolerated(0.15) benign(0.022) TCGA-97-A4M0-01 20 61834884 61834884 C - YTHDF1 Frame_Shift_Del p.S137Lfs*44 0.17 TCGA-97-A4M0-01 20 62126223 62126223 C A EEF1A2 Missense_Mutation p.A186S 0.44 tolerated_low_confidence(0.16) benign(0.202) TCGA-97-A4M0-01 21 31027133 31027133 G T GRIK1 Silent p.T259T 0.17 TCGA-97-A4M0-01 22 16287748 16287748 A T POTEH Silent p.S46S 0.19 TCGA-97-A4M0-01 22 18300823 18300823 T A MICAL3 Missense_Mutation p.E1535V 0.60 possibly_damaging(0.756) TCGA-97-A4M0-01 22 20128506 20128506 G T ZDHHC8 Missense_Mutation p.G289W 0.29 deleterious(0) probably_damaging(1) TCGA-97-A4M0-01 22 20749701 20749701 G T ZNF74 Missense_Mutation p.R38M 0.37 tolerated(0.14) possibly_damaging(0.536) TCGA-97-A4M0-01 22 21363405 21363405 G A AC002472.1 5'Flank 0.70 TCGA-97-A4M0-01 22 21998425 21998425 G T SDF2L1 Missense_Mutation p.K209N 0.38 tolerated(0.08) possibly_damaging(0.51) TCGA-97-A4M0-01 22 24034170 24034170 C A RGL4 5'UTR 0.43 TCGA-97-A4M0-01 22 30855965 30855965 G A SEC14L3 3'UTR 0.31 TCGA-97-A4M0-01 22 43533293 43533293 C A MCAT Missense_Mutation p.V175L 0.63 deleterious(0.02) probably_damaging(0.947) TCGA-97-A4M0-01 2 10104081 10104081 G A GRHL1 Missense_Mutation p.M271I 0.28 deleterious(0) probably_damaging(0.953) TCGA-97-A4M0-01 2 102992438 102992438 G T IL18R1 Missense_Mutation p.Q180H 0.23 deleterious(0.03) possibly_damaging(0.907) TCGA-97-A4M0-01 2 114251400 114251400 C A CBWD2 Missense_Mutation p.Q295K 0.34 deleterious(0.02) possibly_damaging(0.893) TCGA-97-A4M0-01 2 11725325 11725325 A T GREB1 Nonsense_Mutation p.K314* 0.18 TCGA-97-A4M0-01 2 130899728 130899728 A T CCDC74B Silent p.S174S 0.33 TCGA-97-A4M0-01 2 176987785 176987785 C A HOXD9 Missense_Mutation p.H97N 0.33 deleterious(0) probably_damaging(0.992) TCGA-97-A4M0-01 2 179436858 179436858 G T TTN Silent p.A24667A 0.29 TCGA-97-A4M0-01 2 183707211 183707211 T C FRZB Missense_Mutation p.N196S 0.20 tolerated(0.57) possibly_damaging(0.808) TCGA-97-A4M0-01 2 186672557 186672557 C A FSIP2 Missense_Mutation p.S6264Y 0.25 possibly_damaging(0.908) TCGA-97-A4M0-01 2 197511178 197511178 G T CCDC150 Missense_Mutation p.Q42H 0.32 deleterious(0) possibly_damaging(0.907) TCGA-97-A4M0-01 2 201332087 201332087 G C SPATS2L Missense_Mutation p.E308Q 0.24 deleterious(0) probably_damaging(0.998) TCGA-97-A4M0-01 2 209309526 209309526 T A PTH2R Missense_Mutation p.V256E 0.40 deleterious(0) probably_damaging(0.964) TCGA-97-A4M0-01 2 215866300 215866300 T A ABCA12 Missense_Mutation p.S949C 0.38 deleterious(0.01) possibly_damaging(0.778) TCGA-97-A4M0-01 2 217057378 217057378 G T XRCC5 Missense_Mutation p.R654L 0.30 tolerated(0.84) benign(0.087) TCGA-97-A4M0-01 2 219757907 219757907 G C WNT10A Missense_Mutation p.E390Q 0.28 tolerated(0.05) probably_damaging(0.998) TCGA-97-A4M0-01 2 219894347 219894347 C A CCDC108 Missense_Mutation p.W476C 0.25 tolerated(0.29) benign(0.017) TCGA-97-A4M0-01 2 234835196 234835196 C A TRPM8 Missense_Mutation p.A5E 0.28 tolerated_low_confidence(0.43) benign(0.001) TCGA-97-A4M0-01 2 3727503 3727503 C A ALLC Silent p.R73R 0.37 TCGA-97-A4M0-01 2 39998659 39998659 G T THUMPD2 Missense_Mutation p.S83Y 0.33 tolerated(0.12) benign(0.316) TCGA-97-A4M0-01 2 44993592 44993592 A T CAMKMT Silent p.P262P 0.26 TCGA-97-A4M0-01 2 47739523 47739523 G T KCNK12 3'Flank 0.33 TCGA-97-A4M0-01 2 51149803 51149803 G C NRXN1 Silent p.G304G 0.20 TCGA-97-A4M0-01 2 69049868 69049868 G A ARHGAP25 Missense_Mutation p.A533T 0.35 tolerated(0.35) benign(0.005) TCGA-97-A4M0-01 2 72802699 72802699 T A EXOC6B Silent p.T256T 0.32 TCGA-97-A4M0-01 2 73868308 73868308 G C NAT8 Missense_Mutation p.R150G 0.40 tolerated(1) benign(0) TCGA-97-A4M0-01 2 74594537 74594537 C T DCTN1 Missense_Mutation p.S732N 0.35 tolerated(0.08) probably_damaging(0.999) TCGA-97-A4M0-01 2 74720367 74720367 G T TTC31 3'UTR 0.37 TCGA-97-A4M0-01 2 74751342 74751342 C A DQX1 Missense_Mutation p.R175L 0.29 deleterious(0) probably_damaging(0.999) TCGA-97-A4M0-01 2 77745428 77745428 G A LRRTM4 Intron 0.50 TCGA-97-A4M0-01 2 88082582 88082582 C G RGPD2 Missense_Mutation p.E1321Q 0.35 deleterious(0) possibly_damaging(0.607) TCGA-97-A4M0-01 2 90044383 90044383 A G IGKV2D-24 Missense_Mutation p.R102G 0.31 tolerated(0.09) benign(0.015) TCGA-97-A4M0-01 2 90078248 90078248 C A IGKV3D-20 Silent p.T95T 0.25 TCGA-97-A4M0-01 2 96937156 96937156 G A CIAO1 3'UTR 0.31 TCGA-97-A4M0-01 3 100378577 100378577 G T GPR128 Silent p.P623P 0.36 TCGA-97-A4M0-01 3 101010330 101010330 C A IMPG2 Missense_Mutation p.V176L 0.28 tolerated(0.22) benign(0.002) TCGA-97-A4M0-01 3 10379967 10379967 G T ATP2B2 Missense_Mutation p.P1105T 0.57 tolerated(0.38) benign(0.094) TCGA-97-A4M0-01 3 108174704 108174704 T G MYH15 Missense_Mutation p.Y734S 0.24 deleterious(0) probably_damaging(0.971) TCGA-97-A4M0-01 3 14154446 14154446 C T CHCHD4 Missense_Mutation p.A137T 0.75 tolerated(0.69) unknown(0) TCGA-97-A4M0-01 3 148459494 148459494 G T AGTR1 Missense_Mutation p.K224N 0.33 tolerated(0.18) benign(0.011) TCGA-97-A4M0-01 3 170198480 170198480 T A SLC7A14 Missense_Mutation p.I531F 0.29 tolerated(0.71) benign(0.002) TCGA-97-A4M0-01 3 197640778 197640778 C A IQCG Nonsense_Mutation p.E288* 0.34 TCGA-97-A4M0-01 3 28476723 28476723 A G ZCWPW2 Missense_Mutation p.K152R 0.14 tolerated(0.39) benign(0.079) TCGA-97-A4M0-01 3 38548393 38548393 G T EXOG Missense_Mutation p.W193C 0.51 deleterious(0.02) probably_damaging(0.976) TCGA-97-A4M0-01 3 38770137 38770137 G A SCN10A Missense_Mutation p.L846F 0.49 deleterious(0) probably_damaging(0.995) TCGA-97-A4M0-01 3 38888589 38888589 G T SCN11A Missense_Mutation p.R1658S 0.57 deleterious(0) probably_damaging(0.998) TCGA-97-A4M0-01 3 52442491 52442491 T C BAP1 Missense_Mutation p.Q85R 0.53 deleterious(0) probably_damaging(0.995) TCGA-97-A4M0-01 3 95374108 95374108 G C MTHFD2P1 RNA 0.40 TCGA-97-A4M0-01 3 9965591 9965591 G A IL17RC Missense_Mutation p.D288N 0.40 deleterious(0.04) benign(0.119) TCGA-97-A4M0-01 4 103947533 103947533 T A SLC9B2 Missense_Mutation p.Q536H 0.32 tolerated_low_confidence(0.17) benign(0.003) TCGA-97-A4M0-01 4 10444773 10444773 T C ZNF518B Missense_Mutation p.I1060M 0.12 deleterious(0) possibly_damaging(0.84) TCGA-97-A4M0-01 4 104510916 104510916 G A TACR3 Missense_Mutation p.R441C 0.36 tolerated(0.1) benign(0) TCGA-97-A4M0-01 4 106647735 106647735 G T GSTCD Splice_Site p.X299_splice 0.36 TCGA-97-A4M0-01 4 119145643 119145643 C - NDST3 Intron 0.25 TCGA-97-A4M0-01 4 122766799 122766799 G C BBS7 Missense_Mutation p.Q364E 0.30 tolerated(0.09) benign(0.208) TCGA-97-A4M0-01 4 1388539 1388539 C A CRIPAK Silent p.P80P 0.30 TCGA-97-A4M0-01 4 147560544 147560544 G A POU4F2 Silent p.S84S 0.36 TCGA-97-A4M0-01 4 17493927 17493927 T C QDPR Missense_Mutation p.H158R 0.24 deleterious(0) probably_damaging(1) TCGA-97-A4M0-01 4 178911726 178911726 G T LINC01098 3'UTR 0.27 TCGA-97-A4M0-01 4 183696179 183696179 C T TENM3 Missense_Mutation p.T1726I 0.37 deleterious(0.04) possibly_damaging(0.86) TCGA-97-A4M0-01 4 184614124 184614124 G T TRAPPC11 Silent p.V687V 0.16 TCGA-97-A4M0-01 4 184614125 184614125 G T TRAPPC11 Missense_Mutation p.D688Y 0.18 tolerated(0.85) probably_damaging(0.961) TCGA-97-A4M0-01 4 22737821 22737821 C T GBA3 Silent p.I92I 0.33 TCGA-97-A4M0-01 4 46252339 46252339 C A GABRA2 Missense_Mutation p.G448W 0.23 deleterious_low_confidence(0) probably_damaging(0.944) TCGA-97-A4M0-01 4 47602303 47602303 G T CORIN Nonsense_Mutation p.Y958* 0.31 TCGA-97-A4M0-01 4 52861347 52861347 C A LRRC66 Missense_Mutation p.W614L 0.29 tolerated(1) benign(0) TCGA-97-A4M0-01 4 55131086 55131086 C A PDGFRA Missense_Mutation p.A210E 0.22 tolerated(0.07) possibly_damaging(0.573) TCGA-97-A4M0-01 4 55564658 55564658 C G KIT Silent p.L182L 0.45 TCGA-97-A4M0-01 4 55976699 55976699 T C KDR Missense_Mutation p.T376A 0.29 tolerated(0.39) possibly_damaging(0.626) TCGA-97-A4M0-01 4 62935831 62935831 G T LPHN3 Silent p.G1205G 0.28 TCGA-97-A4M0-01 4 66286275 66286275 G T EPHA5 Missense_Mutation p.P471T 0.21 tolerated(0.62) benign(0.011) TCGA-97-A4M0-01 4 77817610 77817610 G C SOWAHB Missense_Mutation p.H465D 0.22 deleterious(0.02) benign(0.227) TCGA-97-A4M0-01 5 111601987 111601987 C A EPB41L4A Missense_Mutation p.G126C 0.78 deleterious(0) probably_damaging(0.999) TCGA-97-A4M0-01 5 118485650 118485650 C T DMXL1 Silent p.I1376I 0.23 TCGA-97-A4M0-01 5 128932356 128932356 A T ADAMTS19 Missense_Mutation p.N487Y 0.46 deleterious(0) probably_damaging(0.997) TCGA-97-A4M0-01 5 132202560 132202560 G C UQCRQ Splice_Site 0.50 TCGA-97-A4M0-01 5 134010908 134010908 G A SEC24A Splice_Site p.X384_splice 0.23 TCGA-97-A4M0-01 5 137230085 137230085 G T PKD2L2 Missense_Mutation p.W104L 0.46 deleterious(0) probably_damaging(0.988) TCGA-97-A4M0-01 5 140175103 140175103 A T PCDHA2 Missense_Mutation p.N185I 0.46 deleterious_low_confidence(0.01) benign(0.038) TCGA-97-A4M0-01 5 140432088 140432088 C T PCDHB1 Missense_Mutation p.P345S 0.26 deleterious(0) probably_damaging(0.998) TCGA-97-A4M0-01 5 140530675 140530675 C A PCDHB6 Silent p.A279A 0.26 TCGA-97-A4M0-01 5 140794911 140794911 G T PCDHGA10 Missense_Mutation p.W723C 0.27 deleterious_low_confidence(0) possibly_damaging(0.598) TCGA-97-A4M0-01 5 140867176 140867176 G A PCDHGC4 Silent p.G812G 0.31 TCGA-97-A4M0-01 5 141052161 141052161 T C ARAP3 Missense_Mutation p.K448R 0.34 tolerated(0.08) possibly_damaging(0.677) TCGA-97-A4M0-01 5 150276360 150276360 C A ZNF300 Missense_Mutation p.Q163H 0.22 tolerated(0.84) possibly_damaging(0.885) TCGA-97-A4M0-01 5 156565775 156565775 C T MED7 Missense_Mutation p.C223Y 0.17 deleterious(0) probably_damaging(0.967) TCGA-97-A4M0-01 5 159821568 159821568 T A C5orf54 Silent p.L310L 0.26 TCGA-97-A4M0-01 5 169186760 169186760 T G DOCK2 Missense_Mutation p.F810V 0.30 deleterious(0.01) probably_damaging(0.926) TCGA-97-A4M0-01 5 171318470 171318470 C A FBXW11 Splice_Site p.X263_splice 0.33 TCGA-97-A4M0-01 5 172660000 172660000 T G NKX2-5 Missense_Mutation p.K183Q 0.19 deleterious(0) possibly_damaging(0.861) TCGA-97-A4M0-01 5 179765592 179765592 C T GFPT2 Missense_Mutation p.A6T 0.33 deleterious(0.01) possibly_damaging(0.808) TCGA-97-A4M0-01 5 26988233 26988233 C A CDH9 Missense_Mutation p.D70Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-97-A4M0-01 5 32712047 32712047 G T NPR3 Silent p.V55V 0.42 TCGA-97-A4M0-01 5 35010122 35010122 C G AGXT2 Missense_Mutation p.E441Q 0.47 deleterious(0) probably_damaging(1) TCGA-97-A4M0-01 5 40945391 40945391 G C C7 Missense_Mutation p.R220P 0.52 tolerated(0.26) benign(0.058) TCGA-97-A4M0-01 5 41382417 41382417 T A PLCXD3 Missense_Mutation p.N108I 0.46 deleterious(0.01) probably_damaging(0.953) TCGA-97-A4M0-01 5 77411967 77411967 T A AP3B1 Missense_Mutation p.D687V 0.31 deleterious(0.04) possibly_damaging(0.804) TCGA-97-A4M0-01 5 7826934 7826934 G C ADCY2 Missense_Mutation p.V1076L 0.04 tolerated(0.14) possibly_damaging(0.629) TCGA-97-A4M0-01 5 93076803 93076803 C A POU5F2 Missense_Mutation p.G156V 0.25 deleterious(0) probably_damaging(0.996) TCGA-97-A4M0-01 5 9629732 9629732 G T TAS2R1 Missense_Mutation p.S138Y 0.32 tolerated(0.11) possibly_damaging(0.862) TCGA-97-A4M0-01 6 102266260 102266260 C A GRIK2 Missense_Mutation p.P407T 0.16 tolerated(0.08) benign(0.118) TCGA-97-A4M0-01 6 110300781 110300781 G T GPR6 Missense_Mutation p.V156F 0.48 deleterious(0) possibly_damaging(0.856) TCGA-97-A4M0-01 6 116956937 116956937 T C ZUFSP 3'UTR 0.39 TCGA-97-A4M0-01 6 129498855 129498855 G - LAMA2 Frame_Shift_Del p.A438Hfs*14 0.25 TCGA-97-A4M0-01 6 130762273 130762273 G T TMEM200A Missense_Mutation p.G236C 0.21 tolerated(0.05) benign(0.087) TCGA-97-A4M0-01 6 132047238 132047238 G C ENPP3 Missense_Mutation p.Q617H 0.17 deleterious(0.02) probably_damaging(0.968) TCGA-97-A4M0-01 6 144806566 144806566 G T UTRN Nonsense_Mutation p.E1245* 0.37 TCGA-97-A4M0-01 6 155129905 155129905 C G SCAF8 Nonsense_Mutation p.S400* 0.22 TCGA-97-A4M0-01 6 159688834 159688834 A T FNDC1 Splice_Site p.X1816_splice 0.22 TCGA-97-A4M0-01 6 160662564 160662564 C A SLC22A2 Silent p.T481T 0.31 TCGA-97-A4M0-01 6 24134685 24134685 T A NRSN1 Missense_Mutation p.Y44N 0.39 tolerated(0.28) benign(0.109) TCGA-97-A4M0-01 6 26508950 26508950 G A BTN1A1 Missense_Mutation p.E377K 0.20 tolerated(0.11) probably_damaging(1) TCGA-97-A4M0-01 6 27839699 27839699 C G HIST1H3I Missense_Mutation p.R132P 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-97-A4M0-01 6 33652436 33652436 G - ITPR3 Frame_Shift_Del p.D1705Tfs*6 0.15 TCGA-97-A4M0-01 6 43308006 43308006 G A ZNF318 Missense_Mutation p.P1244S 0.41 possibly_damaging(0.791) TCGA-97-A4M0-01 6 549213 549213 C A EXOC2 Nonsense_Mutation p.E734* 0.18 TCGA-97-A4M0-01 6 56504145 56504145 A T DST Missense_Mutation p.L422H 0.42 probably_damaging(1) TCGA-97-A4M0-01 6 64410282 64410282 C T PHF3 Missense_Mutation p.H1009Y 0.35 deleterious(0) probably_damaging(0.998) TCGA-97-A4M0-01 6 71236168 71236168 T C FAM135A Silent p.L1127L 0.50 TCGA-97-A4M0-01 6 71236176 71236176 C A FAM135A Missense_Mutation p.S1130Y 0.45 tolerated(0.28) benign(0.361) TCGA-97-A4M0-01 6 71248018 71248018 A G FAM135A Missense_Mutation p.K1381R 0.55 deleterious(0) probably_damaging(0.999) TCGA-97-A4M0-01 6 74493427 74493427 C T CD109 Intron 0.33 TCGA-97-A4M0-01 6 76558187 76558187 G C MYO6 Silent p.R339R 0.46 TCGA-97-A4M0-01 7 121676734 121676734 G T PTPRZ1 Missense_Mutation p.D1789Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-97-A4M0-01 7 121678937 121678937 A T PTPRZ1 Missense_Mutation p.K1832N 0.29 deleterious(0.05) benign(0.185) TCGA-97-A4M0-01 7 12727900 12727900 C G ARL4A Missense_Mutation p.D7E 0.29 tolerated(1) benign(0.002) TCGA-97-A4M0-01 7 137075842 137075842 G A DGKI 3'UTR 0.28 TCGA-97-A4M0-01 7 141727508 141727508 G C MGAM Missense_Mutation p.E398D 0.28 tolerated(0.52) benign(0.001) TCGA-97-A4M0-01 7 142364682 142364682 C A TRBV24-1 Missense_Mutation p.A106D 0.29 deleterious(0) possibly_damaging(0.876) TCGA-97-A4M0-01 7 148508810 148508810 A T EZH2 Missense_Mutation p.H618Q 0.28 deleterious(0) probably_damaging(0.982) TCGA-97-A4M0-01 7 150742500 150742500 G T ABCB8 3'UTR 0.48 TCGA-97-A4M0-01 7 150778617 150778617 C A TMUB1 3'UTR 0.33 TCGA-97-A4M0-01 7 151927017 151927017 G A KMT2C Silent p.V989V 0.09 TCGA-97-A4M0-01 7 19184828 19184828 C A FERD3L Missense_Mutation p.R53M 0.31 tolerated(0.1) benign(0.264) TCGA-97-A4M0-01 7 2275087 2275087 C G FTSJ2 Missense_Mutation p.Q137H 0.29 deleterious(0.03) benign(0.275) TCGA-97-A4M0-01 7 23381702 23381702 G T IGF2BP3 Missense_Mutation p.P395H 0.41 tolerated(0.09) benign(0.017) TCGA-97-A4M0-01 7 28844058 28844058 C A CREB5 Missense_Mutation p.H315Q 0.36 tolerated(0.31) unknown(0) TCGA-97-A4M0-01 7 2946234 2946234 C - CARD11 3'UTR 0.22 TCGA-97-A4M0-01 7 31378476 31378476 A G NEUROD6 Missense_Mutation p.L136S 0.44 deleterious(0) probably_damaging(0.961) TCGA-97-A4M0-01 7 38725385 38725385 G A FAM183B Missense_Mutation p.A74V 0.31 deleterious(0.03) benign(0.259) TCGA-97-A4M0-01 7 53104242 53104242 C A POM121L12 Missense_Mutation p.P293H 0.28 deleterious_low_confidence(0) benign(0.192) TCGA-97-A4M0-01 7 5567818 5567818 T A ACTB Splice_Site p.X268_splice 0.34 TCGA-97-A4M0-01 7 57188412 57188412 C A ZNF479 Missense_Mutation p.G237V 0.28 deleterious(0.01) probably_damaging(1) TCGA-97-A4M0-01 7 64467090 64467090 C A ERV3-1 5'Flank 0.41 TCGA-97-A4M0-01 7 66406959 66406959 C T TMEM248 Missense_Mutation p.T36I 0.35 deleterious(0) probably_damaging(0.929) TCGA-97-A4M0-01 7 71488669 71488669 C T CALN1 Silent p.G158G 0.32 TCGA-97-A4M0-01 7 76019476 76019476 C A SRCRB4D Missense_Mutation p.R543L 0.35 tolerated(0.09) possibly_damaging(0.524) TCGA-97-A4M0-01 7 8008922 8008922 C A GLCCI1 5'UTR 0.21 TCGA-97-A4M0-01 7 81591241 81591241 T A CACNA2D1 Missense_Mutation p.S979C 0.34 deleterious(0.01) possibly_damaging(0.774) TCGA-97-A4M0-01 7 90042545 90042545 G C CLDN12 Silent p.L185L 0.29 TCGA-97-A4M0-01 7 92027912 92027912 C T ANKIB1 Silent p.I973I 0.33 TCGA-97-A4M0-01 7 93072940 93072940 G A CALCR Missense_Mutation p.R294W 0.28 tolerated(0.23) benign(0.006) TCGA-97-A4M0-01 8 104955077 104955077 C A RIMS2 Nonsense_Mutation p.S875* 0.29 TCGA-97-A4M0-01 8 106814043 106814043 T C ZFPM2 Missense_Mutation p.M578T 0.31 tolerated(0.68) benign(0.005) TCGA-97-A4M0-01 8 110432868 110432868 T C PKHD1L1 Silent p.T882T 0.42 TCGA-97-A4M0-01 8 113249521 113249521 C A CSMD3 Nonsense_Mutation p.G3509* 0.27 TCGA-97-A4M0-01 8 113358326 113358326 C A CSMD3 Missense_Mutation p.G2148C 0.16 deleterious(0) probably_damaging(0.996) TCGA-97-A4M0-01 8 113697844 113697844 C T CSMD3 Missense_Mutation p.R758Q 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-97-A4M0-01 8 113871424 113871424 C A CSMD3 Missense_Mutation p.D569Y 0.24 deleterious(0) probably_damaging(0.961) TCGA-97-A4M0-01 8 113988240 113988240 G T CSMD3 Missense_Mutation p.L390I 0.28 tolerated(0.33) benign(0) TCGA-97-A4M0-01 8 130874577 130874577 T C FAM49B Missense_Mutation p.I67V 0.31 deleterious(0.02) probably_damaging(0.937) TCGA-97-A4M0-01 8 131792879 131792879 C A ADCY8 Silent p.L1171L 0.26 TCGA-97-A4M0-01 8 142151541 142151541 G T DENND3 Intron 0.33 TCGA-97-A4M0-01 8 142151542 142151542 G T DENND3 Intron 0.35 TCGA-97-A4M0-01 8 143956474 143956474 C A CYP11B1 Missense_Mutation p.G433C 0.25 deleterious(0.01) probably_damaging(0.965) TCGA-97-A4M0-01 8 145584691 145584691 G A SLC52A2 3'UTR 0.11 TCGA-97-A4M0-01 8 22079139 22079139 C A PHYHIP Silent p.A240A 0.50 TCGA-97-A4M0-01 8 24199223 24199223 C A ADAM28 Missense_Mutation p.Q595K 0.32 tolerated(0.26) benign(0.307) TCGA-97-A4M0-01 8 27378399 27378399 G T EPHX2 Splice_Site p.X316_splice 0.47 TCGA-97-A4M0-01 8 28309993 28309993 T C FBXO16 Missense_Mutation p.T170A 0.59 tolerated(0.07) benign(0.023) TCGA-97-A4M0-01 8 32617784 32617784 A T NRG1 Silent p.V381V 0.46 TCGA-97-A4M0-01 8 37730113 37730113 C G RAB11FIP1 Missense_Mutation p.G736A 0.54 tolerated(0.41) benign(0.085) TCGA-97-A4M0-01 8 52321388 52321388 G A PXDNL Silent p.P932P 0.39 TCGA-97-A4M0-01 8 54628482 54628482 A G ATP6V1H 3'UTR 0.21 TCGA-97-A4M0-01 8 59511904 59511904 T C NSMAF Missense_Mutation p.Q522R 0.31 tolerated(0.17) benign(0.007) TCGA-97-A4M0-01 8 70970922 70970922 G T PRDM14 Missense_Mutation p.L447I 0.45 deleterious(0) probably_damaging(0.998) TCGA-97-A4M0-01 8 87162418 87162418 C G ATP6V0D2 Silent p.T239T 0.29 TCGA-97-A4M0-01 8 87242499 87242499 C A SLC7A13 Missense_Mutation p.R3I 0.39 tolerated(0.12) benign(0.002) TCGA-97-A4M0-01 8 92008890 92008890 C A TMEM55A Missense_Mutation p.G208W 0.23 deleterious(0) probably_damaging(0.999) TCGA-97-A4M0-01 8 92374658 92374658 C G SLC26A7 Silent p.T464T 0.35 TCGA-97-A4M0-01 9 100331257 100331257 C T TMOD1 Silent p.L270L 0.33 TCGA-97-A4M0-01 9 103348392 103348392 G A MURC Missense_Mutation p.G252R 0.36 tolerated(0.14) probably_damaging(1) TCGA-97-A4M0-01 9 108151423 108151423 T C SLC44A1 3'UTR 0.37 TCGA-97-A4M0-01 9 114124286 114124289 TTGT - KIAA0368 3'UTR 0.34 TCGA-97-A4M0-01 9 125424273 125424273 T C OR1L1 Silent p.S93S 0.34 TCGA-97-A4M0-01 9 125946444 125946444 C G STRBP 5'UTR 0.33 TCGA-97-A4M0-01 9 129595619 129595619 G T ZBTB43 Missense_Mutation p.Q277H 0.23 tolerated(0.11) benign(0.359) TCGA-97-A4M0-01 9 130687395 130687395 C A PIP5KL1 Missense_Mutation p.R303L 0.33 tolerated(0.06) benign(0.029) TCGA-97-A4M0-01 9 135863739 135863739 G T GFI1B Nonsense_Mutation p.E132* 0.25 TCGA-97-A4M0-01 9 136403486 136403486 G T ADAMTSL2 Silent p.P83P 0.37 TCGA-97-A4M0-01 9 139397682 139397682 C T NOTCH1 Missense_Mutation p.A1707T 0.38 deleterious(0.02) probably_damaging(0.977) TCGA-97-A4M0-01 9 2054619 2054619 A T SMARCA2 Missense_Mutation p.R357W 0.59 possibly_damaging(0.675) TCGA-97-A4M0-01 9 36356313 36356313 T A RNF38 Missense_Mutation p.Q299L 0.30 deleterious(0.05) probably_damaging(0.916) TCGA-97-A4M0-01 9 73230871 73230871 G T TRPM3 Missense_Mutation p.P815T 0.32 tolerated(0.15) benign(0.436) TCGA-97-A4M0-01 9 79324926 79324926 G A PRUNE2 Missense_Mutation p.P755L 0.42 tolerated(0.2) benign(0.027) TCGA-97-A4M0-01 9 79824409 79824409 G T VPS13A Missense_Mutation p.Q152H 0.18 deleterious(0.03) benign(0.167) TCGA-97-A4M0-01 9 86924580 86924580 T C SLC28A3 Missense_Mutation p.H69R 0.38 tolerated(0.46) benign(0) TCGA-97-A4M0-01 9 90534128 90534128 G A SPATA31C1 Intron 0.33 TCGA-97-A4M0-01 9 94499745 94499745 G T ROR2 Missense_Mutation p.R184S 0.31 deleterious(0.05) benign(0.258) TCGA-97-A4M0-01 9 96294523 96294523 G T FAM120A Missense_Mutation p.Q607H 0.30 deleterious(0) probably_damaging(0.999) TCGA-97-A4M0-01 9 99327125 99327125 T A CDC14B Silent p.A87A 0.27 TCGA-97-A4M0-01 X 100494032 100494032 G T DRP2 Missense_Mutation p.Q167H 0.32 deleterious(0.01) probably_damaging(0.984) TCGA-97-A4M0-01 X 100667615 100667615 G A HNRNPH2 Silent p.P213P 0.35 TCGA-97-A4M0-01 X 104463767 104463767 C A TEX13A Missense_Mutation p.R370I 0.33 deleterious(0) possibly_damaging(0.766) TCGA-97-A4M0-01 X 117752665 117752665 G T DOCK11 Missense_Mutation p.A1149S 0.22 tolerated(1) possibly_damaging(0.865) TCGA-97-A4M0-01 X 118223026 118223026 G T KIAA1210 Missense_Mutation p.Q723K 0.31 deleterious(0.03) possibly_damaging(0.574) TCGA-97-A4M0-01 X 119425146 119425146 C - TMEM255A Frame_Shift_Del p.C105Ffs*4 0.21 TCGA-97-A4M0-01 X 122537305 122537305 G T GRIA3 Missense_Mutation p.D410Y 0.32 tolerated(0.18) benign(0.288) TCGA-97-A4M0-01 X 125299068 125299068 C A DCAF12L2 Silent p.V280V 0.41 TCGA-97-A4M0-01 X 125685608 125685608 G T DCAF12L1 Missense_Mutation p.H328Q 0.32 deleterious(0.02) benign(0.426) TCGA-97-A4M0-01 X 129150093 129150093 G C BCORL1 Silent p.P1115P 0.30 TCGA-97-A4M0-01 X 129518709 129518709 C A GPR119 Missense_Mutation p.W238L 0.29 deleterious(0) probably_damaging(1) TCGA-97-A4M0-01 X 129843275 129843275 C A ENOX2 5'UTR 0.27 TCGA-97-A4M0-01 X 131212671 131212671 G A FRMD7 Silent p.S458S 0.36 TCGA-97-A4M0-01 X 134679347 134679347 G T DDX26B Splice_Site p.X64_splice 0.28 TCGA-97-A4M0-01 X 135067800 135067800 G T SLC9A6 Missense_Mutation p.G47C 0.28 deleterious(0.05) possibly_damaging(0.669) TCGA-97-A4M0-01 X 135430383 135430383 G A GPR112 Silent p.T1506T 0.26 TCGA-97-A4M0-01 X 135764068 135764068 G T ARHGEF6 Missense_Mutation p.D513E 0.36 tolerated(0.25) benign(0.001) TCGA-97-A4M0-01 X 140996190 140996190 G C MAGEC1 Silent p.L1000L 0.30 TCGA-97-A4M0-01 X 141291835 141291835 C A MAGEC2 5'UTR 0.36 TCGA-97-A4M0-01 X 142718914 142718914 C A SLITRK4 Missense_Mutation p.W4L 0.31 tolerated(0.23) benign(0.001) TCGA-97-A4M0-01 X 144905813 144905813 G C SLITRK2 Missense_Mutation p.G624R 0.35 deleterious(0.01) probably_damaging(0.969) TCGA-97-A4M0-01 X 149809741 149809741 G T MTM1 Splice_Site p.X177_splice 0.39 TCGA-97-A4M0-01 X 149809742 149809742 G C MTM1 Missense_Mutation p.G177R 0.38 deleterious(0) benign(0.062) TCGA-97-A4M0-01 X 150906979 150906979 G A CNGA2 Silent p.V8V 0.34 TCGA-97-A4M0-01 X 153055722 153055722 C A IDH3G Missense_Mutation p.R54L 0.25 deleterious(0.01) possibly_damaging(0.841) TCGA-97-A4M0-01 X 153586887 153586887 G C FLNA Silent p.T1508T 0.27 TCGA-97-A4M0-01 X 153760495 153760495 G T G6PD Missense_Mutation p.S485R 0.31 tolerated(0.41) possibly_damaging(0.722) TCGA-97-A4M0-01 X 1584429 1584429 A T P2RY8 Silent p.P341P 0.32 TCGA-97-A4M0-01 X 17739608 17739608 G T NHS Missense_Mutation p.R300S 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-97-A4M0-01 X 18342067 18342067 T G SCML2 Missense_Mutation p.R103S 0.26 tolerated(0.22) benign(0.011) TCGA-97-A4M0-01 X 19387335 19387335 G T MAP3K15 Missense_Mutation p.L1135I 0.30 deleterious(0.01) possibly_damaging(0.881) TCGA-97-A4M0-01 X 2406643 2406643 C A ZBED1 3'UTR 0.45 TCGA-97-A4M0-01 X 30237275 30237275 T C MAGEB2 Missense_Mutation p.L193P 0.27 deleterious(0.04) benign(0.425) TCGA-97-A4M0-01 X 30577855 30577855 A C CXorf21 Silent p.S206S 0.30 TCGA-97-A4M0-01 X 31222183 31222183 C A DMD Silent p.L3234L 0.41 TCGA-97-A4M0-01 X 32305724 32305724 C T DMD Missense_Mutation p.R2071K 0.37 benign(0.001) TCGA-97-A4M0-01 X 35821247 35821247 G T MAGEB16 Missense_Mutation p.A312S 0.46 deleterious(0) unknown(0) TCGA-97-A4M0-01 X 36122702 36122702 T C CHDC2 Silent p.C313C 0.38 TCGA-97-A4M0-01 X 37026739 37026739 C - FAM47C Frame_Shift_Del p.Q87Kfs*32 0.25 TCGA-97-A4M0-01 X 38160619 38160619 C A RPGR Missense_Mutation p.G314C 0.26 probably_damaging(1) TCGA-97-A4M0-01 X 48650388 48650388 G A GATA1 Missense_Mutation p.A120T 0.35 tolerated(0.18) benign(0.001) TCGA-97-A4M0-01 X 49958105 49958105 G T AKAP4 Missense_Mutation p.T420K 0.36 deleterious(0.01) benign(0.345) TCGA-97-A4M0-01 X 50051913 50051913 G A CCNB3 Silent p.S248S 0.29 TCGA-97-A4M0-01 X 53112194 53112194 G C TSPYL2 Missense_Mutation p.V172L 0.36 deleterious(0.02) probably_damaging(0.99) TCGA-97-A4M0-01 X 54784317 54784317 G - ITIH6 Frame_Shift_Del p.S731Qfs*9 0.28 TCGA-97-A4M0-01 X 54956218 54956218 A T TRO Missense_Mutation p.S1021C 0.33 deleterious(0) probably_damaging(0.981) TCGA-97-A4M0-01 X 68381718 68381718 G T PJA1 Missense_Mutation p.S455Y 0.27 tolerated(0.08) possibly_damaging(0.651) TCGA-97-A4M0-01 X 70472696 70472696 G T ZMYM3 Missense_Mutation p.P137H 0.39 deleterious_low_confidence(0.02) benign(0.135) TCGA-97-A4M0-01 X 70832920 70832920 G A ACRC 3'UTR 0.52 TCGA-97-A4M0-01 X 72095162 72095162 C A DMRTC1 Missense_Mutation p.G23V 0.17 deleterious(0.04) possibly_damaging(0.775) TCGA-97-A4M0-01 X 72673429 72673429 T A CDX4 Missense_Mutation p.H193Q 0.49 deleterious(0) probably_damaging(0.996) TCGA-97-A4M0-01 X 76763752 76763752 C G ATRX 3'UTR 0.42 TCGA-97-A4M0-01 X 77126323 77126323 G T MAGT1 Silent p.G156G 0.19 TCGA-97-A4M0-01 X 79698556 79698556 T A FAM46D Missense_Mutation p.V173E 0.40 deleterious(0) probably_damaging(0.995) TCGA-97-A4M0-01 X 88008501 88008501 C A CPXCR1 Missense_Mutation p.T29K 0.26 tolerated(0.05) possibly_damaging(0.895) TCGA-97-A4M0-01 X 99551540 99551540 G A PCDH19 Missense_Mutation p.A1061V 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.611) TCGA-97-A4M1-01 10 52601655 52601655 T G A1CF Missense_Mutation p.N119T 0.19 tolerated(0.18) benign(0.008) TCGA-97-A4M1-01 11 18738373 18738373 G A IGSF22 Missense_Mutation p.T383M 0.16 tolerated(0.1) probably_damaging(1) TCGA-97-A4M1-01 11 26663543 26663543 C T ANO3 Missense_Mutation p.L748F 0.26 deleterious(0.04) benign(0.314) TCGA-97-A4M1-01 11 72289976 72289976 G T PDE2A Missense_Mutation p.Q812K 0.37 deleterious(0.01) probably_damaging(0.964) TCGA-97-A4M1-01 12 113446984 113446984 G T OAS2 Missense_Mutation p.W663L 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-97-A4M1-01 13 60554963 60554963 T C DIAPH3 Missense_Mutation p.E504G 0.22 deleterious(0.04) benign(0.007) TCGA-97-A4M1-01 13 75863085 75863085 G C TBC1D4 Silent p.L1216L 0.07 TCGA-97-A4M1-01 14 21469436 21469436 G T SLC39A2 Missense_Mutation p.V210L 0.08 tolerated(1) benign(0.097) TCGA-97-A4M1-01 14 70245096 70245096 G T SLC10A1 Silent p.L299L 0.15 TCGA-97-A4M1-01 16 15198428 15198428 G A RP11-1186N24.5 3'Flank 0.17 TCGA-97-A4M1-01 16 29831094 29831094 C G PAGR1 3'UTR 0.13 TCGA-97-A4M1-01 16 29998398 29998398 G C TAOK2 Silent p.L935L 0.08 TCGA-97-A4M1-01 16 4308230 4308230 G T TFAP4 Silent p.G281G 0.09 TCGA-97-A4M1-01 16 85106539 85106539 C A KIAA0513 Missense_Mutation p.N146K 0.05 tolerated(0.28) benign(0.003) TCGA-97-A4M1-01 17 56232956 56232956 G A OR4D1 Missense_Mutation p.A148T 0.10 tolerated(0.06) benign(0.089) TCGA-97-A4M1-01 17 58262976 58262976 G C USP32 Missense_Mutation p.R1227G 0.32 deleterious(0) probably_damaging(0.992) TCGA-97-A4M1-01 17 73760023 73760023 G A GALK1 Missense_Mutation p.P104S 0.09 deleterious(0.02) benign(0.177) TCGA-97-A4M1-01 17 74621550 74621550 A C ST6GALNAC1 Missense_Mutation p.D555E 0.19 probably_damaging(0.968) TCGA-97-A4M1-01 17 7578463 7578466 CGGG T TP53 In_Frame_Del p.T155_R156delinsN 0.35 TCGA-97-A4M1-01 18 31523045 31523045 C T NOL4 Missense_Mutation p.R509H 0.09 deleterious(0) probably_damaging(0.999) TCGA-97-A4M1-01 19 4013226 4013226 C T PIAS4 Silent p.L111L 0.11 TCGA-97-A4M1-01 19 46375660 46375660 G A FOXA3 Missense_Mutation p.A133T 0.09 deleterious(0.01) possibly_damaging(0.696) TCGA-97-A4M1-01 1 120438502 120438502 G A ADAM30 Missense_Mutation p.P153L 0.08 tolerated(0.05) benign(0.268) TCGA-97-A4M1-01 1 12884672 12884672 C A PRAMEF11 3'UTR 0.26 TCGA-97-A4M1-01 1 150483702 150483702 G A ECM1 Intron 0.15 TCGA-97-A4M1-01 1 175372564 175372564 A T TNR Missense_Mutation p.C230S 0.07 deleterious(0) possibly_damaging(0.842) TCGA-97-A4M1-01 1 22202226 22202226 C A HSPG2 Silent p.R1066R 0.10 TCGA-97-A4M1-01 1 237813254 237813254 A T RYR2 Missense_Mutation p.R2530S 0.09 benign(0.169) TCGA-97-A4M1-01 20 50401183 50401183 C T SALL4 Missense_Mutation p.R928H 0.06 tolerated(0.07) possibly_damaging(0.777) TCGA-97-A4M1-01 21 47570400 47570400 G C FTCD Missense_Mutation p.L226V 0.13 tolerated(0.25) benign(0.206) TCGA-97-A4M1-01 22 18384734 18384734 G A MICAL3 Missense_Mutation p.R201W 0.18 probably_damaging(1) TCGA-97-A4M1-01 22 51015404 51015404 G A CPT1B Missense_Mutation p.T114M 0.28 deleterious(0.01) probably_damaging(0.932) TCGA-97-A4M1-01 2 168102832 168102832 T A XIRP2 Missense_Mutation p.S1644T 0.22 possibly_damaging(0.486) TCGA-97-A4M1-01 2 170007496 170007496 C T LRP2 Missense_Mutation p.V4168M 0.09 probably_damaging(1) TCGA-97-A4M1-01 2 173916421 173916421 C T RAPGEF4 Missense_Mutation p.R988W 0.17 deleterious(0) probably_damaging(0.999) TCGA-97-A4M1-01 2 179452823 179452823 C T TTN Missense_Mutation p.R21104K 0.16 TCGA-97-A4M1-01 2 207171117 207171117 C T ZDBF2 Missense_Mutation p.A622V 0.16 tolerated(0.11) possibly_damaging(0.827) TCGA-97-A4M1-01 3 167254771 167254771 C G WDR49 Missense_Mutation p.R262P 0.11 deleterious(0.03) benign(0.275) TCGA-97-A4M1-01 3 195491889 195491889 C T MUC4 Missense_Mutation p.V4635M 0.20 probably_damaging(0.963) TCGA-97-A4M1-01 3 447262 447262 C G CHL1 Silent p.V1181V 0.11 TCGA-97-A4M1-01 3 50332592 50332592 C G HYAL3 Missense_Mutation p.A148P 0.06 deleterious(0.02) probably_damaging(0.995) TCGA-97-A4M1-01 4 119674015 119674015 G A SEC24D Nonsense_Mutation p.R484* 0.10 TCGA-97-A4M1-01 4 147561758 147561758 C T POU4F2 Missense_Mutation p.A343V 0.21 deleterious(0.01) benign(0.105) TCGA-97-A4M1-01 4 6331042 6331042 G A PPP2R2C Silent p.Y333Y 0.20 TCGA-97-A4M1-01 4 71844970 71844970 C G MOB1B Missense_Mutation p.L184V 0.11 tolerated(0.34) possibly_damaging(0.871) TCGA-97-A4M1-01 5 140389659 140389659 G C PCDHAC1 3'UTR 0.30 TCGA-97-A4M1-01 5 7867505 7867505 G A FASTKD3 Missense_Mutation p.S231L 0.05 deleterious(0.02) benign(0.028) TCGA-97-A4M1-01 5 7895960 7895960 A G MTRR Silent p.Q584Q 0.10 TCGA-97-A4M1-01 7 150270193 150270193 C A GIMAP4 3'UTR 0.11 TCGA-97-A4M1-01 7 55259515 55259515 T G EGFR Missense_Mutation p.L858R 0.12 deleterious(0) probably_damaging(1) TCGA-97-A4M1-01 8 68074148 68074148 C T CSPP1 Missense_Mutation p.H876Y 0.05 tolerated(0.07) benign(0.332) TCGA-97-A4M1-01 X 109924728 109924728 C T CHRDL1 Missense_Mutation p.V380I 0.12 tolerated(0.58) benign(0.064) TCGA-97-A4M1-01 X 119680993 119680993 T A CUL4B Missense_Mutation p.R276S 0.11 tolerated(0.81) benign(0.014) TCGA-97-A4M1-01 X 153171897 153171897 C T AVPR2 Intron 0.15 TCGA-97-A4M1-01 X 44922915 44922915 G A KDM6A Silent p.L592L 0.10 TCGA-97-A4M1-01 X 54282208 54282208 C G WNK3 Missense_Mutation p.E739Q 0.13 deleterious(0.04) benign(0.08) TCGA-97-A4M2-01 10 74695386 74695386 C T PLA2G12B Missense_Mutation p.E193K 0.04 tolerated(0.29) possibly_damaging(0.621) TCGA-97-A4M2-01 11 128680823 128680823 C A FLI1 Missense_Mutation p.N433K 0.06 deleterious(0.01) possibly_damaging(0.852) TCGA-97-A4M2-01 11 71948308 71948308 C A INPPL1 Missense_Mutation p.A1007D 0.09 tolerated(0.23) benign(0.036) TCGA-97-A4M2-01 11 77389164 77389164 T C RSF1 Missense_Mutation p.I1034V 0.08 deleterious(0.01) benign(0.062) TCGA-97-A4M2-01 12 113710467 113710467 C G TPCN1 Missense_Mutation p.F323L 0.04 deleterious(0) probably_damaging(0.99) TCGA-97-A4M2-01 12 55725831 55725831 C T OR6C3 Missense_Mutation p.S116F 0.08 deleterious_low_confidence(0) benign(0.077) TCGA-97-A4M2-01 12 8289441 8289441 C T CLEC4A Missense_Mutation p.P170S 0.05 deleterious(0.02) possibly_damaging(0.903) TCGA-97-A4M2-01 16 2160490 2160490 C A PKD1 Missense_Mutation p.V1560L 0.06 possibly_damaging(0.685) TCGA-97-A4M2-01 17 48277216 48277216 C G COL1A1 Missense_Mutation p.G66R 0.08 unknown(0) TCGA-97-A4M2-01 19 19304811 19304811 C G RFXANK Nonsense_Mutation p.S19* 0.03 TCGA-97-A4M2-01 1 161132087 161132087 C G USP21 Missense_Mutation p.L230V 0.05 deleterious(0) probably_damaging(0.998) TCGA-97-A4M2-01 1 205138924 205138924 G A DSTYK Missense_Mutation p.R231W 0.06 deleterious(0.01) possibly_damaging(0.586) TCGA-97-A4M2-01 1 233105780 233105780 C G NTPCR Missense_Mutation p.I140M 0.06 deleterious(0.03) benign(0.136) TCGA-97-A4M2-01 1 243329092 243329092 T A CEP170 Missense_Mutation p.S724C 0.11 deleterious(0.02) benign(0.003) TCGA-97-A4M2-01 22 41257968 41257968 G T DNAJB7 Missense_Mutation p.Q11K 0.07 tolerated(0.07) benign(0.266) TCGA-97-A4M2-01 2 232389976 232389976 G A NMUR1 Silent p.P353P 0.07 TCGA-97-A4M2-01 2 50724693 50724693 C A NRXN1 Missense_Mutation p.G926V 0.08 deleterious(0) probably_damaging(0.999) TCGA-97-A4M2-01 3 183774712 183774712 G A HTR3C Missense_Mutation p.E147K 0.06 tolerated(0.14) benign(0.049) TCGA-97-A4M2-01 4 109822299 109822299 T C COL25A1 Silent p.G270G 0.08 TCGA-97-A4M2-01 4 123665067 123665067 C T BBS12 Missense_Mutation p.R674C 0.12 deleterious(0) probably_damaging(1) TCGA-97-A4M2-01 4 47954618 47954618 A T CNGA1 Missense_Mutation p.M103K 0.09 deleterious_low_confidence(0) benign(0.438) TCGA-97-A4M2-01 5 133724037 133724037 G A UBE2B Missense_Mutation p.C88Y 0.07 deleterious(0) probably_damaging(1) TCGA-97-A4M2-01 5 140563073 140563073 G A PCDHB16 Silent p.T313T 0.09 TCGA-97-A4M2-01 5 32229897 32229897 A C MTMR12 Missense_Mutation p.L744R 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-97-A4M2-01 5 37310724 37310724 T A NUP155 Missense_Mutation p.D853V 0.06 deleterious(0) possibly_damaging(0.804) TCGA-97-A4M2-01 5 89990000 89990000 A T GPR98 Missense_Mutation p.N2476I 0.08 benign(0.002) TCGA-97-A4M2-01 6 118791708 118791708 A T CEP85L Missense_Mutation p.L675M 0.08 tolerated(0.21) probably_damaging(0.967) TCGA-97-A4M2-01 8 122627209 122627209 C G HAS2 Missense_Mutation p.E267Q 0.04 deleterious(0) probably_damaging(1) TCGA-97-A4M2-01 8 144997306 144997306 C A PLEC Missense_Mutation p.R2401L 0.17 possibly_damaging(0.735) TCGA-97-A4M2-01 9 34557531 34557531 G A CNTFR Silent p.F199F 0.12 TCGA-97-A4M2-01 X 148072778 148072778 G T AFF2 Silent p.L1284L 0.18 TCGA-97-A4M2-01 X 35820367 35820367 C A MAGEB16 Silent p.T18T 0.19 TCGA-97-A4M3-01 10 104632936 104632936 A G AS3MT Missense_Mutation p.Y135C 0.06 tolerated(0.07) benign(0.072) TCGA-97-A4M3-01 10 125426361 125426361 G T GPR26 Missense_Mutation p.W146C 0.38 deleterious(0) probably_damaging(0.998) TCGA-97-A4M3-01 10 129902432 129902432 C A MKI67 Missense_Mutation p.D2558Y 0.35 deleterious(0) probably_damaging(1) TCGA-97-A4M3-01 10 15600177 15600177 G T ITGA8 Missense_Mutation p.P888T 0.21 tolerated(0.06) possibly_damaging(0.72) TCGA-97-A4M3-01 10 294440 294440 G A ZMYND11 Silent p.Q464Q 0.12 TCGA-97-A4M3-01 10 37508171 37508171 G T ANKRD30A Missense_Mutation p.M1121I 0.07 tolerated(0.23) benign(0) TCGA-97-A4M3-01 10 54529070 54529070 C A MBL2 Missense_Mutation p.D104Y 0.31 deleterious(0.05) benign(0.082) TCGA-97-A4M3-01 10 6104115 6104115 C T IL2RA 5'UTR 0.30 TCGA-97-A4M3-01 10 64973690 64973690 C T JMJD1C Missense_Mutation p.R746K 0.28 tolerated(0.12) possibly_damaging(0.55) TCGA-97-A4M3-01 10 95263058 95263058 G T CEP55 Missense_Mutation p.E124D 0.32 deleterious(0) probably_damaging(0.918) TCGA-97-A4M3-01 11 108117798 108117798 C T ATM Missense_Mutation p.R337C 0.61 deleterious(0) probably_damaging(0.999) TCGA-97-A4M3-01 11 128839563 128839563 C T ARHGAP32 Missense_Mutation p.E1835K 0.28 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-97-A4M3-01 11 130078384 130078384 C T ST14 Missense_Mutation p.R692C 0.55 deleterious(0) probably_damaging(0.998) TCGA-97-A4M3-01 11 134055339 134055339 T A NCAPD3 Missense_Mutation p.T710S 0.64 deleterious(0.03) benign(0.097) TCGA-97-A4M3-01 11 14479388 14479388 C A COPB1 Missense_Mutation p.Q948H 0.42 deleterious(0) possibly_damaging(0.472) TCGA-97-A4M3-01 11 55062948 55062948 C A TRIM51HP RNA 0.23 TCGA-97-A4M3-01 11 55136058 55136058 G C OR4A15 Silent p.A233A 0.35 TCGA-97-A4M3-01 11 55890340 55890340 C A OR8H3 Missense_Mutation p.S164R 0.24 tolerated(0.19) benign(0.049) TCGA-97-A4M3-01 11 59992493 59992493 T A MS4A4E Intron 0.21 TCGA-97-A4M3-01 11 62364116 62364116 T A MTA2 Missense_Mutation p.Q292L 0.30 deleterious(0.01) possibly_damaging(0.728) TCGA-97-A4M3-01 11 63668343 63668343 G - MARK2 Frame_Shift_Del p.R328Gfs*4 0.27 TCGA-97-A4M3-01 11 65391707 65391707 C A PCNXL3 Missense_Mutation p.F862L 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-97-A4M3-01 11 65392665 65392665 C A PCNXL3 Silent p.V981V 0.23 TCGA-97-A4M3-01 11 65392880 65392880 C T PCNXL3 Silent p.L1012L 0.26 TCGA-97-A4M3-01 11 65393131 65393131 C G PCNXL3 Silent p.V1048V 0.18 TCGA-97-A4M3-01 11 71850891 71850891 C A FOLR3 3'UTR 0.18 TCGA-97-A4M3-01 12 102796278 102796278 G T IGF1 3'UTR 0.26 TCGA-97-A4M3-01 12 109201542 109201542 C G SSH1 Missense_Mutation p.G200R 0.43 deleterious(0.02) probably_damaging(0.973) TCGA-97-A4M3-01 12 130923022 130923022 C A RIMBP2 Missense_Mutation p.G498V 0.52 deleterious(0) probably_damaging(0.964) TCGA-97-A4M3-01 12 1943618 1943618 G T LRTM2 Missense_Mutation p.G282W 0.24 deleterious(0.02) probably_damaging(0.969) TCGA-97-A4M3-01 12 29736491 29736491 G T TMTC1 Missense_Mutation p.L423I 0.30 tolerated(0.05) probably_damaging(0.98) TCGA-97-A4M3-01 12 43771174 43771175 CC - ADAMTS20 Frame_Shift_Del p.W1663* 0.33 TCGA-97-A4M3-01 12 48963777 48963777 C T LALBA Silent p.L9L 0.29 TCGA-97-A4M3-01 12 53069263 53069263 C A KRT1 Missense_Mutation p.G550V 0.20 tolerated(0.24) unknown(0) TCGA-97-A4M3-01 12 55725574 55725574 C T OR6C3 Silent p.I30I 0.29 TCGA-97-A4M3-01 12 56667541 56667541 C G CS Missense_Mutation p.D354H 0.18 deleterious(0) probably_damaging(1) TCGA-97-A4M3-01 12 62902314 62902314 T G MON2 Intron 0.43 TCGA-97-A4M3-01 12 72094890 72094890 T A TMEM19 3'UTR 0.62 TCGA-97-A4M3-01 12 72956672 72956672 G T TRHDE Missense_Mutation p.V587L 0.35 deleterious(0.01) benign(0.077) TCGA-97-A4M3-01 12 8756845 8756845 T - AICDA 3'UTR 0.33 TCGA-97-A4M3-01 12 91450009 91450009 G T KERA Missense_Mutation p.T17N 0.30 tolerated(0.4) benign(0.019) TCGA-97-A4M3-01 13 101717798 101717798 C A NALCN Missense_Mutation p.R1521M 0.30 deleterious(0) probably_damaging(0.976) TCGA-97-A4M3-01 13 45768790 45768790 C G KCTD4 5'UTR 0.36 TCGA-97-A4M3-01 13 52532665 52532665 A G ATP7B Missense_Mutation p.Y713H 0.27 tolerated(0.47) benign(0.242) TCGA-97-A4M3-01 14 105518155 105518155 G T GPR132 Missense_Mutation p.R107S 0.30 tolerated(0.23) benign(0.069) TCGA-97-A4M3-01 14 21548906 21548906 G T ARHGEF40 Nonsense_Mutation p.E821* 0.35 TCGA-97-A4M3-01 14 69808482 69808482 G T GALNT16 Splice_Site p.X424_splice 0.47 TCGA-97-A4M3-01 14 73137989 73137989 G A DPF3 Missense_Mutation p.T310M 0.29 tolerated_low_confidence(0.05) benign(0.003) TCGA-97-A4M3-01 14 90450920 90450920 G A TDP1 Silent p.S315S 0.26 TCGA-97-A4M3-01 15 43170825 43170825 C A TTBK2 5'UTR 0.42 TCGA-97-A4M3-01 15 43699769 43699769 C T TP53BP1 Splice_Site p.X1916_splice 0.15 TCGA-97-A4M3-01 15 68653962 68653962 G C ITGA11 Missense_Mutation p.F146L 0.33 tolerated(0.14) probably_damaging(0.999) TCGA-97-A4M3-01 15 75632117 75632117 C T COMMD4 Missense_Mutation p.P153S 0.36 deleterious(0.01) probably_damaging(0.981) TCGA-97-A4M3-01 15 83933323 83933323 G T BNC1 Missense_Mutation p.P227H 0.28 deleterious(0) probably_damaging(0.976) TCGA-97-A4M3-01 16 27500985 27500985 C T GTF3C1 Silent p.E1077E 0.46 TCGA-97-A4M3-01 16 31409208 31409208 G T ITGAD Missense_Mutation p.Q135H 0.25 deleterious(0.01) benign(0.219) TCGA-97-A4M3-01 16 4016478 4016478 C T ADCY9 Silent p.L1120L 0.39 TCGA-97-A4M3-01 16 48242388 48242388 C A ABCC11 Missense_Mutation p.C543F 0.36 deleterious(0) probably_damaging(1) TCGA-97-A4M3-01 16 511444 511444 G T RAB11FIP3 Missense_Mutation p.G252V 0.30 deleterious(0.03) probably_damaging(0.967) TCGA-97-A4M3-01 16 53686795 53686795 G T RPGRIP1L Silent p.R602R 0.43 TCGA-97-A4M3-01 16 66423294 66423294 G T CDH5 Missense_Mutation p.R217L 0.28 deleterious(0) probably_damaging(0.999) TCGA-97-A4M3-01 16 71610119 71610119 G T TAT Missense_Mutation p.P67Q 0.17 deleterious(0.02) benign(0.122) TCGA-97-A4M3-01 16 74506311 74506311 T C GLG1 Splice_Site p.X685_splice 0.27 TCGA-97-A4M3-01 16 81888091 81888091 C A PLCG2 Missense_Mutation p.S79Y 0.42 deleterious(0) possibly_damaging(0.723) TCGA-97-A4M3-01 16 88945685 88945685 G T CBFA2T3 Missense_Mutation p.S552Y 0.44 deleterious(0) possibly_damaging(0.806) TCGA-97-A4M3-01 16 9004618 9004618 C A USP7 Missense_Mutation p.G382V 0.23 deleterious(0) probably_damaging(1) TCGA-97-A4M3-01 17 1576725 1576725 G A PRPF8 Missense_Mutation p.R1195C 0.29 deleterious(0.01) probably_damaging(1) TCGA-97-A4M3-01 17 26969036 26969036 T A KIAA0100 Missense_Mutation p.S213C 0.37 tolerated(0.05) possibly_damaging(0.591) TCGA-97-A4M3-01 17 3806863 3806863 G T P2RX1 Missense_Mutation p.P196Q 0.36 deleterious(0) probably_damaging(0.997) TCGA-97-A4M3-01 17 38567973 38567973 C T TOP2A Missense_Mutation p.R296K 0.55 deleterious(0) probably_damaging(0.98) TCGA-97-A4M3-01 17 38954528 38954528 G T KRT28 Missense_Mutation p.L217M 0.12 deleterious(0.01) probably_damaging(0.927) TCGA-97-A4M3-01 17 4351559 4351559 G A SPNS3 Missense_Mutation p.R244K 0.36 tolerated(0.26) benign(0.033) TCGA-97-A4M3-01 17 46135950 46135950 C G NFE2L1 Silent p.L422L 0.24 TCGA-97-A4M3-01 17 62131718 62131718 C A ERN1 Silent p.L615L 0.42 TCGA-97-A4M3-01 17 6328811 6328811 G T AIPL1 Missense_Mutation p.P375H 0.32 deleterious_low_confidence(0) unknown(0) TCGA-97-A4M3-01 17 74076406 74076406 C G ZACN Missense_Mutation p.L149V 0.29 tolerated(0.11) possibly_damaging(0.867) TCGA-97-A4M3-01 17 75192298 75192298 G T SEC14L1 Missense_Mutation p.D242Y 0.24 deleterious(0) probably_damaging(1) TCGA-97-A4M3-01 17 7761413 7761413 G A CYB5D1 5'UTR 0.30 TCGA-97-A4M3-01 18 28919895 28919895 C A DSG1 Missense_Mutation p.P532T 0.37 tolerated(0.29) benign(0) TCGA-97-A4M3-01 18 28993193 28993193 C A DSG4 Missense_Mutation p.P939T 0.28 deleterious(0) probably_damaging(1) TCGA-97-A4M3-01 18 31319913 31319913 C A ASXL3 Missense_Mutation p.P849T 0.32 benign(0.002) TCGA-97-A4M3-01 18 31323098 31323098 A G ASXL3 Missense_Mutation p.T1096A 0.18 benign(0) TCGA-97-A4M3-01 18 3188808 3188808 C A MYOM1 Nonsense_Mutation p.E237* 0.34 TCGA-97-A4M3-01 18 43249417 43249417 C G SLC14A2 Missense_Mutation p.A728G 0.22 tolerated(0.19) benign(0.297) TCGA-97-A4M3-01 18 60985607 60985607 C T BCL2 Missense_Mutation p.R98H 0.35 deleterious(0) benign(0.189) TCGA-97-A4M3-01 19 10602923 10602923 C G KEAP1 Missense_Mutation p.E219Q 0.35 deleterious(0.03) benign(0.361) TCGA-97-A4M3-01 19 1207092 1207092 C - STK11 Frame_Shift_Del p.Y60* 0.39 TCGA-97-A4M3-01 19 22157592 22157592 C A ZNF208 Missense_Mutation p.A82S 0.34 tolerated(0.62) benign(0.265) TCGA-97-A4M3-01 19 31039405 31039405 G A ZNF536 Missense_Mutation p.S960N 0.34 tolerated(0.33) benign(0.001) TCGA-97-A4M3-01 19 32944130 32944130 G T DPY19L3 Missense_Mutation p.G312V 0.29 tolerated(0.32) probably_damaging(0.983) TCGA-97-A4M3-01 19 40541447 40541447 G C ZNF780B Missense_Mutation p.S440C 0.35 deleterious(0) possibly_damaging(0.869) TCGA-97-A4M3-01 19 4174896 4174896 C G SIRT6 Missense_Mutation p.M262I 0.44 tolerated(0.06) benign(0.391) TCGA-97-A4M3-01 19 44500947 44500947 A T ZNF155 Missense_Mutation p.E324V 0.30 deleterious(0) probably_damaging(0.997) TCGA-97-A4M3-01 19 47422924 47422924 A T ARHGAP35 Missense_Mutation p.E331V 0.33 deleterious(0) probably_damaging(0.92) TCGA-97-A4M3-01 19 47423821 47423821 G T ARHGAP35 Missense_Mutation p.G630V 0.35 deleterious(0) probably_damaging(1) TCGA-97-A4M3-01 19 49796523 49796523 C T SLC6A16 Missense_Mutation p.V579I 0.24 tolerated(1) benign(0.002) TCGA-97-A4M3-01 19 57889658 57889658 G T ZNF547 3'UTR 0.32 TCGA-97-A4M3-01 19 9063857 9063857 G C MUC16 Missense_Mutation p.I7863M 0.49 unknown(0) TCGA-97-A4M3-01 19 968450 968450 A T ARID3A Missense_Mutation p.N514I 0.27 deleterious(0.01) probably_damaging(0.969) TCGA-97-A4M3-01 1 103540337 103540337 C G COL11A1 Splice_Site p.X163_splice 0.28 TCGA-97-A4M3-01 1 10364089 10364089 G T KIF1B Intron 0.40 TCGA-97-A4M3-01 1 11300470 11300470 T A MTOR Missense_Mutation p.K559M 0.07 deleterious(0.04) benign(0.155) TCGA-97-A4M3-01 1 11317216 11317217 - G MTOR Frame_Shift_Ins p.L93Pfs*27 0.18 TCGA-97-A4M3-01 1 118527376 118527376 A T SPAG17 Missense_Mutation p.L1900Q 0.32 tolerated(0.1) possibly_damaging(0.793) TCGA-97-A4M3-01 1 12954997 12954997 T A PRAMEF10 Splice_Site p.X96_splice 0.44 TCGA-97-A4M3-01 1 144868093 144868093 G A PDE4DIP Silent p.N1782N 0.18 TCGA-97-A4M3-01 1 156640382 156640382 G A NES Missense_Mutation p.P1200S 0.64 tolerated(0.16) benign(0.141) TCGA-97-A4M3-01 1 167097933 167097933 A T DUSP27 3'UTR 0.43 TCGA-97-A4M3-01 1 175116086 175116086 G - TNN Frame_Shift_Del p.W1260* 0.09 TCGA-97-A4M3-01 1 176927506 176927506 C A ASTN1 Missense_Mutation p.V571L 0.53 deleterious(0.01) benign(0.242) TCGA-97-A4M3-01 1 178834215 178834215 G T ANGPTL1 Missense_Mutation p.L233M 0.43 tolerated(0.24) possibly_damaging(0.535) TCGA-97-A4M3-01 1 242271042 242271042 G A PLD5 Silent p.P390P 0.12 TCGA-97-A4M3-01 1 248004941 248004941 C G OR11L1 Silent p.L86L 0.19 TCGA-97-A4M3-01 1 248437021 248437021 G T OR2T33 Silent p.I32I 0.17 TCGA-97-A4M3-01 1 248616651 248616651 G A OR2T2 Missense_Mutation p.V185M 0.15 tolerated(0.16) probably_damaging(0.999) TCGA-97-A4M3-01 1 32089241 32089241 G A HCRTR1 Missense_Mutation p.E286K 0.26 tolerated(0.08) benign(0.03) TCGA-97-A4M3-01 1 3548811 3548811 A C WRAP73 Missense_Mutation p.F338L 0.27 deleterious(0.01) benign(0.391) TCGA-97-A4M3-01 1 36643587 36643587 G A MAP7D1 Missense_Mutation p.R498Q 0.22 probably_damaging(0.997) TCGA-97-A4M3-01 1 44436377 44436377 G T DPH2 Missense_Mutation p.G86V 0.45 deleterious(0) probably_damaging(0.946) TCGA-97-A4M3-01 1 45472399 45472399 C T HECTD3 Missense_Mutation p.V564M 0.08 tolerated(0.23) benign(0.231) TCGA-97-A4M3-01 1 52943553 52943553 G C ZCCHC11 Missense_Mutation p.S617C 0.28 deleterious(0.03) possibly_damaging(0.879) TCGA-97-A4M3-01 1 70397230 70397230 G A LRRC7 Missense_Mutation p.G192S 0.17 tolerated(0.11) probably_damaging(0.998) TCGA-97-A4M3-01 1 70541787 70541787 G T LRRC7 Missense_Mutation p.G1382W 0.23 deleterious(0) probably_damaging(1) TCGA-97-A4M3-01 20 30585239 30585239 G T XKR7 Silent p.L573L 0.32 TCGA-97-A4M3-01 20 34832682 34832682 G T AAR2 Missense_Mutation p.W274L 0.23 deleterious(0) probably_damaging(1) TCGA-97-A4M3-01 20 34832683 34832683 G T AAR2 Missense_Mutation p.W274C 0.22 deleterious(0) probably_damaging(1) TCGA-97-A4M3-01 20 61453460 61453460 C A COL9A3 Intron 0.45 TCGA-97-A4M3-01 20 9525092 9525092 G T PAK7 Missense_Mutation p.P598Q 0.28 tolerated(0.14) probably_damaging(1) TCGA-97-A4M3-01 21 33976537 33976537 G C AP000275.65 Missense_Mutation p.D144E 0.30 tolerated(0.07) benign(0.221) TCGA-97-A4M3-01 22 20230097 20230097 C A RTN4R Missense_Mutation p.G187C 0.30 deleterious(0) probably_damaging(1) TCGA-97-A4M3-01 22 31998707 31998707 C T SFI1 Missense_Mutation p.R581C 0.08 tolerated(0.09) benign(0.002) TCGA-97-A4M3-01 22 42536349 42536349 A G NDUFA6-AS1 3'Flank 0.18 TCGA-97-A4M3-01 22 45918978 45918978 G T FBLN1 Intron 0.29 TCGA-97-A4M3-01 2 116539951 116539951 C A DPP10 Missense_Mutation p.L507I 0.39 tolerated(0.17) possibly_damaging(0.499) TCGA-97-A4M3-01 2 121747580 121747580 G T GLI2 Missense_Mutation p.A1364S 0.53 tolerated(1) benign(0.002) TCGA-97-A4M3-01 2 135710897 135710897 G T CCNT2 Missense_Mutation p.S291I 0.68 deleterious(0.02) benign(0.043) TCGA-97-A4M3-01 2 141680605 141680605 C A LRP1B Missense_Mutation p.S1083I 0.23 probably_damaging(0.954) TCGA-97-A4M3-01 2 15618411 15618411 T C NBAS Silent p.P362P 0.55 TCGA-97-A4M3-01 2 158397655 158397655 A T ACVR1C Missense_Mutation p.I391N 0.52 deleterious(0) probably_damaging(0.996) TCGA-97-A4M3-01 2 168873606 168873606 C T STK39 Splice_Site p.X459_splice 0.27 TCGA-97-A4M3-01 2 177034262 177034262 C A HOXD3 Silent p.A140A 0.22 TCGA-97-A4M3-01 2 178494216 178494216 C G PDE11A Missense_Mutation p.E907D 0.41 tolerated(0.37) possibly_damaging(0.636) TCGA-97-A4M3-01 2 19553070 19553070 C A OSR1 Missense_Mutation p.R166L 0.68 deleterious(0.01) benign(0.336) TCGA-97-A4M3-01 2 204305090 204305090 T C RAPH1 Silent p.P941P 0.49 TCGA-97-A4M3-01 2 204305324 204305324 C G RAPH1 Missense_Mutation p.K863N 0.25 benign(0.023) TCGA-97-A4M3-01 2 217057441 217057441 G A XRCC5 Nonsense_Mutation p.W675* 0.55 TCGA-97-A4M3-01 2 219222716 219222716 C T C2orf62 Intron 0.37 TCGA-97-A4M3-01 2 228235643 228235643 G A TM4SF20 Silent p.N79N 0.49 TCGA-97-A4M3-01 2 232322438 232322438 C T NCL Missense_Mutation p.D455N 0.29 possibly_damaging(0.552) TCGA-97-A4M3-01 2 39281778 39281778 T A SOS1 Missense_Mutation p.N233Y 0.71 tolerated(1) possibly_damaging(0.621) TCGA-97-A4M3-01 2 54482311 54482311 A C TSPYL6 Silent p.T326T 0.05 TCGA-97-A4M3-01 2 55646154 55646154 C T CCDC88A Nonsense_Mutation p.W21* 0.15 TCGA-97-A4M3-01 2 69565089 69565089 C T GFPT1 Missense_Mutation p.E475K 0.25 tolerated(0.25) possibly_damaging(0.504) TCGA-97-A4M3-01 2 89309946 89309946 C A IGKV1-9 Missense_Mutation p.M3I 0.22 deleterious_low_confidence(0.02) benign(0.113) TCGA-97-A4M3-01 2 9630449 9630449 C G ADAM17 Missense_Mutation p.E778Q 0.62 tolerated_low_confidence(0.11) benign(0.015) TCGA-97-A4M3-01 2 97361315 97361315 G A FER1L5 RNA 0.24 TCGA-97-A4M3-01 3 100364873 100364873 G A GPR128 Missense_Mutation p.S344N 0.29 tolerated(0.15) benign(0.101) TCGA-97-A4M3-01 3 150127639 150127639 G T TSC22D2 Missense_Mutation p.D168Y 0.44 deleterious(0) possibly_damaging(0.861) TCGA-97-A4M3-01 3 186570860 186570860 G T ADIPOQ Nonsense_Mutation p.G5* 0.53 TCGA-97-A4M3-01 3 27758884 27758884 A G EOMES Missense_Mutation p.S580P 0.23 tolerated(0.24) benign(0.265) TCGA-97-A4M3-01 3 30875763 30875763 C A GADL1 Missense_Mutation p.G305V 0.34 deleterious(0) probably_damaging(1) TCGA-97-A4M3-01 3 37035149 37035149 G C MLH1 Missense_Mutation p.E37D 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-97-A4M3-01 3 49148453 49148453 C A USP19 Missense_Mutation p.G1157C 0.21 deleterious(0) probably_damaging(0.997) TCGA-97-A4M3-01 3 87017994 87017994 C G VGLL3 Missense_Mutation p.R228P 0.18 tolerated(0.33) benign(0.38) TCGA-97-A4M3-01 3 87017995 87017995 G C VGLL3 Missense_Mutation p.R228G 0.16 tolerated(0.23) benign(0.132) TCGA-97-A4M3-01 3 87017996 87017996 C A VGLL3 Missense_Mutation p.M227I 0.16 tolerated(0.41) benign(0.013) TCGA-97-A4M3-01 3 93780124 93780124 T C DHFRL1 Missense_Mutation p.R78G 0.08 deleterious(0) probably_damaging(0.934) TCGA-97-A4M3-01 3 9828886 9828886 T C TADA3 Missense_Mutation p.K235E 0.36 tolerated(0.75) benign(0.023) TCGA-97-A4M3-01 4 110434945 110434945 G T SEC24B Missense_Mutation p.G649V 0.30 deleterious(0.05) probably_damaging(1) TCGA-97-A4M3-01 4 148595012 148595012 C A PRMT10 Missense_Mutation p.D118Y 0.21 deleterious(0) probably_damaging(1) TCGA-97-A4M3-01 4 183594345 183594345 G T TENM3 Silent p.R433R 0.33 TCGA-97-A4M3-01 4 186329175 186329175 C A UFSP2 Nonsense_Mutation p.G346* 0.23 TCGA-97-A4M3-01 4 26719612 26719612 G T TBC1D19 Missense_Mutation p.A338S 0.20 tolerated(0.34) probably_damaging(0.938) TCGA-97-A4M3-01 4 52729838 52729838 C T DCUN1D4 Silent p.N33N 0.35 TCGA-97-A4M3-01 4 65146772 65146772 T A TECRL Silent p.T317T 0.22 TCGA-97-A4M3-01 4 66286268 66286268 G T EPHA5 Missense_Mutation p.T473N 0.30 tolerated(0.37) benign(0.239) TCGA-97-A4M3-01 4 66286274 66286274 G T EPHA5 Missense_Mutation p.P471Q 0.24 tolerated(0.86) possibly_damaging(0.697) TCGA-97-A4M3-01 5 118485508 118485508 A C DMXL1 Missense_Mutation p.Q1329P 0.33 deleterious(0) probably_damaging(1) TCGA-97-A4M3-01 5 140249145 140249145 C G PCDHA11 Missense_Mutation p.P153A 0.35 deleterious_low_confidence(0) possibly_damaging(0.749) TCGA-97-A4M3-01 5 140517376 140517376 C A PCDHB5 Missense_Mutation p.A787D 0.33 tolerated_low_confidence(0.15) benign(0.003) TCGA-97-A4M3-01 5 140603170 140603170 A G PCDHB14 Silent p.A31A 0.29 TCGA-97-A4M3-01 5 140731390 140731391 GC - PCDHGB1 Frame_Shift_Del p.A523Lfs*30 0.31 TCGA-97-A4M3-01 5 140769198 140769198 G T PCDHGB4 Missense_Mutation p.G583C 0.37 deleterious(0) probably_damaging(0.999) TCGA-97-A4M3-01 5 156589411 156589411 C A FAM71B 3'UTR 0.30 TCGA-97-A4M3-01 5 175716824 175716824 A T SIMC1 Intron 0.25 TCGA-97-A4M3-01 5 176026495 176026495 C T GPRIN1 Missense_Mutation p.G114E 0.28 tolerated(0.46) benign(0.007) TCGA-97-A4M3-01 5 178585795 178585795 G T ADAMTS2 Missense_Mutation p.T354K 0.29 deleterious(0.04) benign(0.283) TCGA-97-A4M3-01 5 180432766 180432766 T C BTNL3 Missense_Mutation p.L432P 0.24 deleterious(0.02) unknown(0) TCGA-97-A4M3-01 5 35873695 35873695 G T IL7R Missense_Mutation p.W217C 0.16 deleterious(0) probably_damaging(0.999) TCGA-97-A4M3-01 5 40681274 40681274 G T PTGER4 Missense_Mutation p.G60V 0.33 deleterious(0) probably_damaging(0.953) TCGA-97-A4M3-01 5 41181643 41181643 C T C6 Missense_Mutation p.D249N 0.24 tolerated(0.08) probably_damaging(0.952) TCGA-97-A4M3-01 5 41794128 41794128 C A OXCT1 Missense_Mutation p.D409Y 0.23 deleterious(0) probably_damaging(1) TCGA-97-A4M3-01 5 78329215 78329215 C A DMGDH Missense_Mutation p.A404S 0.32 tolerated(0.57) benign(0.084) TCGA-97-A4M3-01 5 90079695 90079695 A G GPR98 Missense_Mutation p.T4492A 0.21 possibly_damaging(0.899) TCGA-97-A4M3-01 6 112460488 112460488 T A LAMA4 Missense_Mutation p.K1039M 0.06 deleterious(0) probably_damaging(0.999) TCGA-97-A4M3-01 6 129823818 129823818 A T LAMA2 Silent p.A2753A 0.24 TCGA-97-A4M3-01 6 146125711 146125711 C A FBXO30 Missense_Mutation p.D611Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-97-A4M3-01 6 161032688 161032688 T A LPA Missense_Mutation p.T837S 0.07 tolerated(0.44) probably_damaging(0.969) TCGA-97-A4M3-01 6 26234599 26234599 T C HIST1H1D Missense_Mutation p.K188R 0.41 deleterious(0.04) unknown(0) TCGA-97-A4M3-01 6 30571007 30571007 T C PPP1R10 Missense_Mutation p.D608G 0.26 deleterious(0) possibly_damaging(0.762) TCGA-97-A4M3-01 6 35762924 35762924 C G CLPS Nonstop_Mutation p.*113Sext*42 0.16 TCGA-97-A4M3-01 6 36990024 36990024 G A FGD2 Missense_Mutation p.E446K 0.23 tolerated(0.25) benign(0.366) TCGA-97-A4M3-01 6 51798979 51798979 G A PKHD1 Missense_Mutation p.S2017F 0.33 tolerated(0.71) benign(0.033) TCGA-97-A4M3-01 6 52269009 52269009 G C PAQR8 Missense_Mutation p.C333S 0.37 tolerated(0.19) probably_damaging(0.994) TCGA-97-A4M3-01 6 52269010 52269010 C T PAQR8 Silent p.C333C 0.37 TCGA-97-A4M3-01 6 55925731 55925731 C A COL21A1 Silent p.G770G 0.28 TCGA-97-A4M3-01 6 55925732 55925732 C A COL21A1 Missense_Mutation p.G770V 0.27 deleterious(0) probably_damaging(1) TCGA-97-A4M3-01 6 76022793 76022793 C A FILIP1 Nonsense_Mutation p.E919* 0.37 TCGA-97-A4M3-01 7 107356021 107356021 T A SLC26A4 3'UTR 0.29 TCGA-97-A4M3-01 7 107580477 107580477 C T LAMB1 Missense_Mutation p.A1240T 0.30 tolerated(0.23) benign(0.004) TCGA-97-A4M3-01 7 140221682 140221682 G A DENND2A Missense_Mutation p.R962W 0.38 deleterious(0) probably_damaging(1) TCGA-97-A4M3-01 7 146536993 146536993 C T CNTNAP2 Silent p.I133I 0.39 TCGA-97-A4M3-01 7 150417320 150417320 C G GIMAP1 Missense_Mutation p.C76W 0.34 tolerated(0.57) benign(0.001) TCGA-97-A4M3-01 7 35289651 35289651 C A TBX20 Missense_Mutation p.A98S 0.28 tolerated(0.59) benign(0.063) TCGA-97-A4M3-01 7 43918525 43918525 C A URGCP Silent p.T179T 0.34 TCGA-97-A4M3-01 7 57528601 57528601 T C ZNF716 Missense_Mutation p.V145A 0.24 deleterious(0.01) benign(0.413) TCGA-97-A4M3-01 7 92921060 92921060 A G CCDC132 Missense_Mutation p.K330E 0.32 deleterious(0) possibly_damaging(0.591) TCGA-97-A4M3-01 7 93633510 93633510 C A BET1 Missense_Mutation p.G7C 0.25 deleterious(0) probably_damaging(1) TCGA-97-A4M3-01 7 99328720 99328720 G A CYP3A7 Missense_Mutation p.P43S 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-97-A4M3-01 7 99669593 99669593 C A ZNF3 Nonsense_Mutation p.E172* 0.30 TCGA-97-A4M3-01 7 99669594 99669594 G A ZNF3 Silent p.S171S 0.30 TCGA-97-A4M3-01 8 42037883 42037883 G T PLAT Missense_Mutation p.H367N 0.08 tolerated(0.57) benign(0.01) TCGA-97-A4M3-01 8 42232314 42232314 C T DKK4 Missense_Mutation p.R127K 0.05 tolerated(1) benign(0.003) TCGA-97-A4M3-01 8 53540663 53540663 G C RB1CC1 Missense_Mutation p.T1522S 0.36 tolerated(0.12) possibly_damaging(0.649) TCGA-97-A4M3-01 9 100056350 100056350 G A CCDC180 5'UTR 0.12 TCGA-97-A4M3-01 9 106889632 106889632 T A SMC2 Silent p.T887T 0.27 TCGA-97-A4M3-01 9 123675619 123675619 C A TRAF1 Missense_Mutation p.S231I 0.40 tolerated(0.31) possibly_damaging(0.553) TCGA-97-A4M3-01 9 131337584 131337584 G T SPTAN1 Missense_Mutation p.R204I 0.30 deleterious(0.03) probably_damaging(0.967) TCGA-97-A4M3-01 9 21077632 21077632 G C IFNB1 Silent p.T79T 0.34 TCGA-97-A4M3-01 9 70178123 70178123 T G FOXD4L5 5'UTR 0.50 TCGA-97-A4M3-01 9 75526923 75526923 G T ALDH1A1 Missense_Mutation p.P384H 0.09 deleterious(0) probably_damaging(1) TCGA-97-A4M3-01 9 79321279 79321279 C A PRUNE2 Missense_Mutation p.D1971Y 0.31 deleterious(0.05) benign(0.08) TCGA-97-A4M3-01 9 79322950 79322950 C T PRUNE2 Missense_Mutation p.D1414N 0.38 tolerated(0.14) benign(0.254) TCGA-97-A4M3-01 9 79635564 79635564 G A FOXB2 Missense_Mutation p.A332T 0.24 tolerated_low_confidence(0.07) probably_damaging(0.981) TCGA-97-A4M3-01 9 84609550 84609550 G T SPATA31D1 Missense_Mutation p.G1389C 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-97-A4M3-01 9 90500444 90500444 C A SPATA31E1 Missense_Mutation p.H348N 0.32 deleterious(0.01) benign(0.122) TCGA-97-A4M3-01 X 103411599 103411599 G T FAM199X Missense_Mutation p.D45Y 0.12 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-97-A4M3-01 X 129205072 129205072 C A ELF4 Missense_Mutation p.W251L 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-97-A4M3-01 X 129289263 129289263 T A AIFM1 Intron 0.27 TCGA-97-A4M3-01 X 133547667 133547667 G T PHF6 Nonsense_Mutation p.E189* 0.31 TCGA-97-A4M3-01 X 13771519 13771519 T C OFD1 Missense_Mutation p.I363T 0.30 tolerated(0.85) benign(0.002) TCGA-97-A4M3-01 X 140984438 140984438 C T MAGEC3 Intron 0.05 TCGA-97-A4M3-01 X 1584364 1584364 C A P2RY8 3'UTR 0.18 TCGA-97-A4M3-01 X 30237713 30237713 C A MAGEB2 3'UTR 0.26 TCGA-97-A4M3-01 X 46360507 46360507 C T ZNF674 Missense_Mutation p.G173R 0.29 tolerated(0.22) benign(0.082) TCGA-97-A4M3-01 X 46433844 46433844 C G CHST7 Missense_Mutation p.L160V 0.38 tolerated(0.17) probably_damaging(0.998) TCGA-97-A4M3-01 X 48326126 48326126 G T SLC38A5 Missense_Mutation p.P34T 0.21 tolerated(0.3) benign(0.002) TCGA-97-A4M3-01 X 49021366 49021366 A T MAGIX Missense_Mutation p.T149S 0.34 deleterious(0.04) benign(0.122) TCGA-97-A4M3-01 X 53574893 53574893 G C HUWE1 Silent p.L3459L 0.32 TCGA-97-A4M3-01 X 53610740 53610740 C A HUWE1 Silent p.L1766L 0.26 TCGA-97-A4M3-01 X 5827217 5827217 G T NLGN4X Missense_Mutation p.A230E 0.32 deleterious(0) probably_damaging(1) TCGA-97-A4M3-01 X 63410915 63410915 G T AMER1 Missense_Mutation p.P751H 0.32 deleterious(0) possibly_damaging(0.625) TCGA-97-A4M3-01 X 76225864 76225864 C A MIR325 RNA 0.24 TCGA-97-A4M3-01 X 76225865 76225865 C A MIR325 RNA 0.23 TCGA-97-A4M3-01 X 78216209 78216209 C A P2RY10 Missense_Mutation p.S64R 0.31 tolerated(0.36) benign(0.012) TCGA-97-A4M3-01 X 83351227 83351227 C A RPS6KA6 Missense_Mutation p.W649L 0.08 deleterious(0) probably_damaging(0.992) TCGA-97-A4M3-01 X 83351228 83351228 A G RPS6KA6 Missense_Mutation p.W649R 0.08 deleterious(0) probably_damaging(0.996) TCGA-97-A4M5-01 10 103920652 103920652 G A NOLC1 Missense_Mutation p.E515K 0.08 tolerated_low_confidence(0.25) unknown(0) TCGA-97-A4M5-01 10 135373621 135373621 A G SYCE1 Missense_Mutation p.M37T 0.06 deleterious(0) possibly_damaging(0.72) TCGA-97-A4M5-01 10 16979638 16979638 C T CUBN Nonsense_Mutation p.W1960* 0.10 TCGA-97-A4M5-01 10 403797 403797 G A DIP2C Nonsense_Mutation p.Q959* 0.12 TCGA-97-A4M5-01 10 61592387 61592387 C G CCDC6 Missense_Mutation p.E160Q 0.12 deleterious(0.01) probably_damaging(0.966) TCGA-97-A4M5-01 10 63212678 63212678 G A TMEM26 Silent p.L54L 0.10 TCGA-97-A4M5-01 10 70152914 70152914 C T RUFY2 Missense_Mutation p.E246K 0.11 deleterious(0) probably_damaging(0.961) TCGA-97-A4M5-01 10 99025638 99025638 G A ARHGAP19 Missense_Mutation p.L101F 0.11 tolerated(0.72) benign(0.029) TCGA-97-A4M5-01 11 124789730 124789730 C G HEPN1 Silent p.P28P 0.15 TCGA-97-A4M5-01 11 22399095 22399095 C T SLC17A6 Missense_Mutation p.H520Y 0.09 tolerated(0.12) benign(0.001) TCGA-97-A4M5-01 11 57982241 57982241 C T OR1S1 Nonsense_Mutation p.Q9* 0.08 TCGA-97-A4M5-01 11 59211194 59211194 C A OR5A1 Missense_Mutation p.P185T 0.12 tolerated(0.08) probably_damaging(0.969) TCGA-97-A4M5-01 11 88300380 88300380 A T GRM5 Missense_Mutation p.I824N 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-97-A4M5-01 12 106977076 106977076 C T RP11-144F15.1 Intron 0.14 TCGA-97-A4M5-01 12 10955127 10955127 C T TAS2R7 Missense_Mutation p.G15R 0.11 deleterious(0) probably_damaging(0.966) TCGA-97-A4M5-01 12 120741830 120741830 C T SIRT4 Missense_Mutation p.R156C 0.11 deleterious(0.03) benign(0.118) TCGA-97-A4M5-01 12 123380645 123380645 G T VPS37B 5'UTR 0.11 TCGA-97-A4M5-01 12 123782635 123782635 G A SBNO1 Missense_Mutation p.S1310L 0.10 tolerated(0.3) benign(0.286) TCGA-97-A4M5-01 12 124268683 124268683 G A DNAH10 Missense_Mutation p.D336N 0.09 probably_damaging(0.982) TCGA-97-A4M5-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.21 deleterious(0.04) probably_damaging(0.993) TCGA-97-A4M5-01 12 27832555 27832555 C T PPFIBP1 Silent p.I589I 0.11 TCGA-97-A4M5-01 12 30848540 30848540 G C IPO8 Missense_Mutation p.I14M 0.14 tolerated(0.37) benign(0.119) TCGA-97-A4M5-01 12 49086941 49086941 G A CCNT1 Missense_Mutation p.P686S 0.11 tolerated_low_confidence(1) benign(0.001) TCGA-97-A4M5-01 12 49086993 49086993 G A CCNT1 Silent p.L668L 0.09 TCGA-97-A4M5-01 12 49087120 49087120 G C CCNT1 Nonsense_Mutation p.S626* 0.12 TCGA-97-A4M5-01 12 49391546 49391546 C G DDN Silent p.S371S 0.16 TCGA-97-A4M5-01 12 6570094 6570094 G C TAPBPL Missense_Mutation p.Q427H 0.11 deleterious(0.03) benign(0.037) TCGA-97-A4M5-01 12 7031262 7031262 C G ENO2 Missense_Mutation p.H371D 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-97-A4M5-01 12 85547872 85547872 G A LRRIQ1 Missense_Mutation p.D1574N 0.17 deleterious(0.03) benign(0.086) TCGA-97-A4M5-01 12 91497864 91497864 C - LUM 3'UTR 0.11 TCGA-97-A4M5-01 13 100953794 100953794 C T PCCA Silent p.L382L 0.16 TCGA-97-A4M5-01 13 103271129 103271129 G C TPP2 Missense_Mutation p.E185Q 0.14 deleterious(0.01) probably_damaging(0.971) TCGA-97-A4M5-01 13 108881784 108881784 C T ABHD13 Missense_Mutation p.S73F 0.14 tolerated(0.37) possibly_damaging(0.596) TCGA-97-A4M5-01 13 28578263 28578263 G T FLT3 Missense_Mutation p.Q970K 0.15 tolerated(0.59) benign(0.065) TCGA-97-A4M5-01 13 31712588 31712588 G A HSPH1 Nonsense_Mutation p.Q776* 0.15 TCGA-97-A4M5-01 13 94482633 94482633 C T GPC6 Silent p.F182F 0.16 TCGA-97-A4M5-01 14 107211121 107211121 G A IGHV3-73 Silent p.V56V 0.10 TCGA-97-A4M5-01 14 21897347 21897347 G A CHD8 Nonsense_Mutation p.Q331* 0.15 TCGA-97-A4M5-01 14 24976669 24976669 G - CMA1 Frame_Shift_Del p.Y35Tfs*8 0.12 TCGA-97-A4M5-01 14 31381030 31381030 C G STRN3 Missense_Mutation p.K517N 0.10 deleterious(0) benign(0.202) TCGA-97-A4M5-01 14 45656994 45656994 G A FANCM Missense_Mutation p.M1561I 0.11 deleterious(0) probably_damaging(0.997) TCGA-97-A4M5-01 14 47343356 47343356 G A MDGA2 Nonsense_Mutation p.Q829* 0.10 TCGA-97-A4M5-01 14 71478241 71478241 C T PCNX Missense_Mutation p.S918L 0.09 tolerated(0.18) probably_damaging(0.996) TCGA-97-A4M5-01 14 74416642 74416642 C T COQ6 5'Flank 0.11 TCGA-97-A4M5-01 14 78398019 78398019 C G ADCK1 Silent p.L455L 0.09 TCGA-97-A4M5-01 15 100821539 100821539 G A ADAMTS17 Silent p.L228L 0.17 TCGA-97-A4M5-01 15 100821545 100821545 G A ADAMTS17 Silent p.I226I 0.14 TCGA-97-A4M5-01 15 101938627 101938627 G C PCSK6 Missense_Mutation p.F325L 0.10 tolerated(0.18) benign(0.24) TCGA-97-A4M5-01 15 22861877 22861877 G T TUBGCP5 Nonsense_Mutation p.E633* 0.08 TCGA-97-A4M5-01 15 22863040 22863040 G T TUBGCP5 Silent p.L687L 0.11 TCGA-97-A4M5-01 15 22864301 22864301 G C TUBGCP5 Missense_Mutation p.Q753H 0.05 deleterious(0.01) probably_damaging(0.95) TCGA-97-A4M5-01 15 31217443 31217443 C G FAN1 Missense_Mutation p.F762L 0.12 tolerated(0.24) benign(0.001) TCGA-97-A4M5-01 15 34654985 34654985 C T LPCAT4 Missense_Mutation p.E267K 0.11 deleterious(0) probably_damaging(0.997) TCGA-97-A4M5-01 15 43814224 43814224 G C MAP1A Missense_Mutation p.E185Q 0.13 probably_damaging(0.998) TCGA-97-A4M5-01 15 43814764 43814764 G C MAP1A Missense_Mutation p.E365Q 0.11 probably_damaging(0.992) TCGA-97-A4M5-01 15 48633708 48633708 G A DUT Intron 0.21 TCGA-97-A4M5-01 15 55619816 55619816 G A PIGB Missense_Mutation p.E169K 0.09 tolerated(0.17) benign(0.033) TCGA-97-A4M5-01 15 65756178 65756178 T C DPP8 Missense_Mutation p.Y647C 0.13 deleterious(0) probably_damaging(0.998) TCGA-97-A4M5-01 15 74572368 74572368 G A CCDC33 Missense_Mutation p.R275Q 0.17 tolerated(0.13) benign(0.001) TCGA-97-A4M5-01 15 75650805 75650805 C T MAN2C1 Missense_Mutation p.E818K 0.11 tolerated(0.34) benign(0.004) TCGA-97-A4M5-01 15 77471357 77471357 T C PEAK1 Missense_Mutation p.H971R 0.15 deleterious(0.01) benign(0.424) TCGA-97-A4M5-01 15 89015892 89015892 C G MRPS11 Missense_Mutation p.L73V 0.08 deleterious(0.03) possibly_damaging(0.802) TCGA-97-A4M5-01 16 15844061 15844061 C T MYH11 Silent p.L671L 0.07 TCGA-97-A4M5-01 16 18846393 18846393 G C SMG1 Missense_Mutation p.I2717M 0.11 tolerated(0.23) possibly_damaging(0.459) TCGA-97-A4M5-01 16 2335490 2335490 G C ABCA3 Missense_Mutation p.L1146V 0.11 deleterious(0) possibly_damaging(0.808) TCGA-97-A4M5-01 16 28507607 28507607 G A APOBR Silent p.E415E 0.14 TCGA-97-A4M5-01 16 31138575 31138575 C T KAT8 Silent p.F194F 0.08 TCGA-97-A4M5-01 16 53636095 53636095 C T RPGRIP1L Missense_Mutation p.D1281N 0.10 tolerated(0.1) benign(0.191) TCGA-97-A4M5-01 16 71149692 71149692 C A HYDIN Missense_Mutation p.D412Y 0.14 probably_damaging(0.991) TCGA-97-A4M5-01 17 38146393 38146393 G A PSMD3 Silent p.T308T 0.12 TCGA-97-A4M5-01 17 38556205 38556205 C G TOP2A Missense_Mutation p.G1039R 0.16 deleterious(0) probably_damaging(0.946) TCGA-97-A4M5-01 17 47115631 47115631 G A IGF2BP1 Missense_Mutation p.R168Q 0.11 tolerated(0.1) benign(0.07) TCGA-97-A4M5-01 17 55123150 55123150 C G RNF126P1 RNA 0.28 TCGA-97-A4M5-01 17 61972892 61972892 C A CSH1 Missense_Mutation p.D133Y 0.07 deleterious(0.01) benign(0.032) TCGA-97-A4M5-01 17 73498482 73498482 C T CASKIN2 Silent p.E891E 0.18 TCGA-97-A4M5-01 17 73499789 73499789 G A CASKIN2 Missense_Mutation p.S544L 0.12 tolerated(0.14) benign(0.025) TCGA-97-A4M5-01 18 54363664 54363664 C G WDR7 Missense_Mutation p.Q517E 0.14 deleterious(0.03) benign(0.01) TCGA-97-A4M5-01 18 61308162 61308162 C A SERPINB4 Missense_Mutation p.A139S 0.14 deleterious(0.01) possibly_damaging(0.883) TCGA-97-A4M5-01 19 13263993 13263993 G C IER2 5'UTR 0.15 TCGA-97-A4M5-01 19 14000978 14000978 C G C19orf57 Missense_Mutation p.G231R 0.06 tolerated(0.63) benign(0) TCGA-97-A4M5-01 19 16797132 16797132 C G TMEM38A Silent p.L196L 0.13 TCGA-97-A4M5-01 19 20727892 20727892 C G ZNF737 Missense_Mutation p.E373Q 0.09 deleterious(0.01) possibly_damaging(0.572) TCGA-97-A4M5-01 19 39408419 39408419 C G SARS2 Missense_Mutation p.E371Q 0.11 tolerated(0.25) benign(0.155) TCGA-97-A4M5-01 19 41939525 41939525 T A ATP5SL Missense_Mutation p.E123V 0.10 tolerated(0.06) benign(0.071) TCGA-97-A4M5-01 19 41939526 41939526 C A ATP5SL Nonsense_Mutation p.E123* 0.10 TCGA-97-A4M5-01 19 44791837 44791837 G C ZNF235 Nonsense_Mutation p.S584* 0.10 TCGA-97-A4M5-01 19 50435975 50435975 C G ATF5 Missense_Mutation p.L159V 0.16 tolerated(0.18) probably_damaging(0.978) TCGA-97-A4M5-01 19 50969574 50969574 C G MYBPC2 3'UTR 0.30 TCGA-97-A4M5-01 19 56539846 56539846 C T NLRP5 Silent p.S749S 0.07 TCGA-97-A4M5-01 19 57640599 57640599 G T USP29 Nonsense_Mutation p.E186* 0.09 TCGA-97-A4M5-01 19 58265102 58265102 C T ZNF776 Nonsense_Mutation p.Q202* 0.04 TCGA-97-A4M5-01 19 8601175 8601175 C G MYO1F Missense_Mutation p.Q668H 0.09 deleterious(0) possibly_damaging(0.858) TCGA-97-A4M5-01 19 9071248 9071248 G A MUC16 Missense_Mutation p.H5400Y 0.06 unknown(0) TCGA-97-A4M5-01 1 11087442 11087442 C T MASP2 Missense_Mutation p.E521K 0.11 tolerated(0.27) probably_damaging(0.941) TCGA-97-A4M5-01 1 115218533 115218533 G A AMPD1 Nonsense_Mutation p.Q527* 0.13 TCGA-97-A4M5-01 1 14106040 14106040 G A PRDM2 Missense_Mutation p.D584N 0.11 probably_damaging(0.99) TCGA-97-A4M5-01 1 158819004 158819004 G T MNDA Nonsense_Mutation p.E401* 0.25 TCGA-97-A4M5-01 1 160811238 160811238 C A CD244 Missense_Mutation p.K144N 0.10 deleterious(0.02) possibly_damaging(0.737) TCGA-97-A4M5-01 1 166810314 166810314 G A POGK Missense_Mutation p.E41K 0.12 deleterious_low_confidence(0.01) benign(0.015) TCGA-97-A4M5-01 1 173910431 173910431 G A RC3H1 Missense_Mutation p.P1075S 0.08 tolerated_low_confidence(0.31) benign(0.002) TCGA-97-A4M5-01 1 176564016 176564016 C A PAPPA2 Missense_Mutation p.L426M 0.09 deleterious(0.01) possibly_damaging(0.447) TCGA-97-A4M5-01 1 196743998 196743998 A T CFHR3 5'UTR 0.06 TCGA-97-A4M5-01 1 197407738 197407738 G T CRB1 Nonsense_Mutation p.G1271* 0.07 TCGA-97-A4M5-01 1 226475390 226475390 C T LIN9 Missense_Mutation p.E141K 0.12 deleterious(0) probably_damaging(1) TCGA-97-A4M5-01 1 241671920 241671920 G C FH Missense_Mutation p.P241A 0.07 deleterious(0) probably_damaging(1) TCGA-97-A4M5-01 1 241796960 241796960 G A CHML 3'UTR 0.12 TCGA-97-A4M5-01 1 247464222 247464222 C T ZNF496 Missense_Mutation p.E455K 0.18 tolerated(0.17) probably_damaging(0.959) TCGA-97-A4M5-01 1 27332920 27332920 C T FAM46B Missense_Mutation p.V265I 0.11 tolerated(0.12) benign(0.008) TCGA-97-A4M5-01 1 54605396 54605396 C T CDCP2 Missense_Mutation p.E383K 0.08 tolerated(0.54) benign(0.002) TCGA-97-A4M5-01 1 86948048 86948048 G T CLCA1 Missense_Mutation p.A240S 0.16 tolerated(0.12) benign(0.008) TCGA-97-A4M5-01 20 36640338 36640338 T G TTI1 Silent p.I627I 0.10 TCGA-97-A4M5-01 20 39832858 39832858 G C ZHX3 Missense_Mutation p.I233M 0.12 tolerated(0.07) benign(0.104) TCGA-97-A4M5-01 20 42891869 42891869 G A GDAP1L1 Splice_Site p.X183_splice 0.09 TCGA-97-A4M5-01 20 43851577 43851577 C G SEMG2 Missense_Mutation p.S435C 0.15 tolerated(0.12) possibly_damaging(0.902) TCGA-97-A4M5-01 20 43851975 43851975 C G SEMG2 Missense_Mutation p.H568D 0.10 deleterious(0.03) benign(0.266) TCGA-97-A4M5-01 20 45315554 45315554 G C TP53RK Silent p.L200L 0.16 TCGA-97-A4M5-01 20 468152 468152 A C CSNK2A1 Missense_Mutation p.L298V 0.09 tolerated(0.2) benign(0.248) TCGA-97-A4M5-01 20 57769285 57769285 G A ZNF831 Missense_Mutation p.D1071N 0.14 tolerated(0.05) benign(0.012) TCGA-97-A4M5-01 22 22036746 22036746 C G PPIL2 Missense_Mutation p.I136M 0.12 deleterious(0.01) benign(0.167) TCGA-97-A4M5-01 22 24581643 24581643 C T SUSD2 Missense_Mutation p.S362L 0.09 deleterious(0) possibly_damaging(0.555) TCGA-97-A4M5-01 2 131803227 131803227 C A ARHGEF4 Intron 0.35 TCGA-97-A4M5-01 2 15378747 15378747 C T NBAS Missense_Mutation p.E1930K 0.09 tolerated(0.12) benign(0.057) TCGA-97-A4M5-01 2 15767219 15767219 C G DDX1 Missense_Mutation p.H546D 0.13 deleterious(0.02) probably_damaging(1) TCGA-97-A4M5-01 2 168115356 168115356 C T XIRP2 3'UTR 0.18 TCGA-97-A4M5-01 2 169713286 169713286 G A NOSTRIN Missense_Mutation p.E408K 0.11 deleterious(0.01) possibly_damaging(0.847) TCGA-97-A4M5-01 2 175087797 175087797 G A OLA1 Missense_Mutation p.H113Y 0.10 deleterious(0) probably_damaging(0.99) TCGA-97-A4M5-01 2 189873791 189873791 G T COL3A1 Nonsense_Mutation p.E1223* 0.12 TCGA-97-A4M5-01 2 190541456 190541456 C T ANKAR Silent p.F80F 0.08 TCGA-97-A4M5-01 2 196664086 196664086 T G DNAH7 Silent p.P3429P 0.15 TCGA-97-A4M5-01 2 197946417 197946417 G C ANKRD44 Nonsense_Mutation p.S472* 0.12 TCGA-97-A4M5-01 2 21230397 21230397 C T APOB Missense_Mutation p.V3115I 0.14 benign(0.002) TCGA-97-A4M5-01 2 219561571 219561571 G C STK36 Intron 0.12 TCGA-97-A4M5-01 2 3743318 3743318 G A ALLC Missense_Mutation p.A175T 0.10 deleterious(0) probably_damaging(0.999) TCGA-97-A4M5-01 2 42282530 42282530 A T PKDCC Missense_Mutation p.T407S 0.14 tolerated(0.71) benign(0.001) TCGA-97-A4M5-01 3 150176241 150176241 G A TSC22D2 Missense_Mutation p.E721K 0.13 deleterious(0) possibly_damaging(0.621) TCGA-97-A4M5-01 3 153839863 153839863 C T ARHGEF26 Nonsense_Mutation p.Q28* 0.18 TCGA-97-A4M5-01 3 160156518 160156518 A C TRIM59 Missense_Mutation p.L152V 0.05 deleterious(0) probably_damaging(0.925) TCGA-97-A4M5-01 3 170185016 170185016 C T SLC7A14 Missense_Mutation p.E715K 0.08 tolerated(0.24) benign(0.001) TCGA-97-A4M5-01 3 20019840 20019840 C T RAB5A Silent p.F159F 0.14 TCGA-97-A4M5-01 3 38271907 38271907 G A OXSR1 Missense_Mutation p.E313K 0.14 tolerated(0.29) benign(0.15) TCGA-97-A4M5-01 3 48664422 48664422 C G SLC26A6 Missense_Mutation p.D654H 0.11 deleterious(0.01) benign(0.063) TCGA-97-A4M5-01 4 109571866 109571866 C T OSTC Silent p.L19L 0.06 TCGA-97-A4M5-01 4 160273836 160273836 G T RAPGEF2 Splice_Site p.X1128_splice 0.14 TCGA-97-A4M5-01 4 164050298 164050298 C T NAF1 Silent p.Q412Q 0.14 TCGA-97-A4M5-01 4 186536069 186536069 C T SORBS2 Silent p.P1033P 0.14 TCGA-97-A4M5-01 4 3227432 3227432 G A HTT Missense_Mutation p.E2604K 0.15 probably_damaging(0.934) TCGA-97-A4M5-01 4 47405418 47405418 C T GABRB1 Nonsense_Mutation p.Q210* 0.10 TCGA-97-A4M5-01 4 71472233 71472233 G T AMBN Missense_Mutation p.S377I 0.08 tolerated(0.08) benign(0.202) TCGA-97-A4M5-01 4 90874223 90874223 C G MMRN1 Missense_Mutation p.P1114R 0.10 deleterious(0) probably_damaging(0.993) TCGA-97-A4M5-01 5 118510967 118510967 G A DMXL1 Missense_Mutation p.M2231I 0.11 deleterious(0.01) benign(0.284) TCGA-97-A4M5-01 5 123983203 123983203 C T ZNF608 Missense_Mutation p.M958I 0.08 tolerated(0.19) benign(0.007) TCGA-97-A4M5-01 5 134044431 134044431 G C SEC24A Silent p.L860L 0.12 TCGA-97-A4M5-01 5 137600206 137600206 C T GFRA3 Missense_Mutation p.M41I 0.08 tolerated(0.4) benign(0.004) TCGA-97-A4M5-01 5 140476414 140476414 G A PCDHB2 Silent p.P680P 0.11 TCGA-97-A4M5-01 5 140744899 140744899 G T PCDHGA5 Silent p.V334V 0.08 TCGA-97-A4M5-01 5 1422008 1422008 C T SLC6A3 Missense_Mutation p.V259M 0.10 deleterious(0.01) probably_damaging(0.931) TCGA-97-A4M5-01 5 169533523 169533523 G A FOXI1 Missense_Mutation p.E188K 0.20 deleterious(0) possibly_damaging(0.685) TCGA-97-A4M5-01 5 176721900 176721900 G C NSD1 Missense_Mutation p.D2511H 0.11 deleterious_low_confidence(0) possibly_damaging(0.8) TCGA-97-A4M5-01 5 34024066 34024066 C T C1QTNF3 Missense_Mutation p.E250K 0.09 tolerated(0.22) possibly_damaging(0.596) TCGA-97-A4M5-01 5 37121722 37121722 C T C5orf42 Missense_Mutation p.R3007K 0.08 tolerated(0.33) benign(0.046) TCGA-97-A4M5-01 5 78693382 78693382 C T HOMER1 Missense_Mutation p.E255K 0.11 deleterious(0.03) probably_damaging(0.99) TCGA-97-A4M5-01 5 79617308 79617308 C T SPZ1 Missense_Mutation p.S425L 0.05 deleterious(0.01) benign(0.399) TCGA-97-A4M5-01 6 116977967 116977967 G A ZUFSP Nonsense_Mutation p.R281* 0.09 TCGA-97-A4M5-01 6 131948538 131948538 G A MED23 Nonsense_Mutation p.Q53* 0.12 TCGA-97-A4M5-01 6 13615976 13615976 G C NOL7 Missense_Mutation p.R100P 0.05 deleterious(0.03) probably_damaging(0.995) TCGA-97-A4M5-01 6 167752174 167752174 T C TTLL2 Silent p.I29I 0.14 TCGA-97-A4M5-01 6 29430426 29430426 G A OR2H1 Missense_Mutation p.E294K 0.10 deleterious(0.02) possibly_damaging(0.665) TCGA-97-A4M5-01 6 74073402 74073402 G A KHDC3L Missense_Mutation p.R158H 0.18 tolerated(0.26) possibly_damaging(0.762) TCGA-97-A4M5-01 7 138732513 138732513 G C ZC3HAV1 Missense_Mutation p.L846V 0.13 deleterious(0) probably_damaging(0.932) TCGA-97-A4M5-01 7 148895584 148895584 G A ZNF282 Missense_Mutation p.E109K 0.09 deleterious(0) probably_damaging(0.997) TCGA-97-A4M5-01 7 150217434 150217434 G A GIMAP7 Missense_Mutation p.M124I 0.20 tolerated(0.06) possibly_damaging(0.692) TCGA-97-A4M5-01 7 22771063 22771063 C T IL6 Silent p.T170T 0.07 TCGA-97-A4M5-01 7 35053184 35053184 G C DPY19L1 Missense_Mutation p.P109R 0.05 deleterious(0) probably_damaging(0.999) TCGA-97-A4M5-01 7 76255365 76255365 A G POMZP3 Missense_Mutation p.V6A 0.09 tolerated_low_confidence(0.09) unknown(0) TCGA-97-A4M5-01 8 13162805 13162805 G C DLC1 Missense_Mutation p.Q441E 0.13 tolerated(0.07) benign(0) TCGA-97-A4M5-01 8 2048819 2048819 C T MYOM2 Missense_Mutation p.T865M 0.19 deleterious(0.02) possibly_damaging(0.475) TCGA-97-A4M5-01 8 21766768 21766768 G C DOK2 3'UTR 0.06 TCGA-97-A4M5-01 8 48647880 48647882 GAA - SPIDR In_Frame_Del p.K873del 0.08 TCGA-97-A4M5-01 8 61761617 61761617 G A CHD7 Missense_Mutation p.D1770N 0.13 probably_damaging(0.993) TCGA-97-A4M5-01 9 112898425 112898425 G C PALM2-AKAP2 Missense_Mutation p.E201Q 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-97-A4M5-01 9 116835207 116835207 C T AMBP Missense_Mutation p.R185Q 0.09 tolerated(0.06) possibly_damaging(0.801) TCGA-97-A4M5-01 9 130216818 130216818 C T LRSAM1 Silent p.F4F 0.12 TCGA-97-A4M5-01 9 131749890 131749890 C G NUP188 Missense_Mutation p.L763V 0.11 tolerated(0.48) possibly_damaging(0.866) TCGA-97-A4M5-01 9 131752418 131752418 C G NUP188 Silent p.L851L 0.10 TCGA-97-A4M5-01 9 140056864 140056864 G A GRIN1 Missense_Mutation p.G608D 0.09 deleterious(0) probably_damaging(1) TCGA-97-A4M5-01 9 19102581 19102581 G C HAUS6 Missense_Mutation p.F23L 0.10 tolerated(0.13) probably_damaging(0.999) TCGA-97-A4M5-01 9 35609360 35609360 C T TESK1 Missense_Mutation p.S501L 0.05 tolerated(0.13) benign(0.001) TCGA-97-A4M5-01 9 35712044 35712044 C G TLN1 Silent p.L1213L 0.14 TCGA-97-A4M5-01 9 35738624 35738624 C T GBA2 Silent p.V651V 0.13 TCGA-97-A4M5-01 9 88200404 88200404 C T AGTPBP1 Missense_Mutation p.D1007N 0.11 tolerated(0.26) benign(0.138) TCGA-97-A4M5-01 9 90388107 90388107 C G CTSL3P RNA 0.08 TCGA-97-A4M5-01 X 117739263 117739263 C G DOCK11 Silent p.L875L 0.24 TCGA-97-A4M5-01 X 16867404 16867404 G C RBBP7 Nonsense_Mutation p.S398* 0.16 TCGA-97-A4M6-01 10 1063240 1063240 G A GTPBP4 3'UTR 0.28 TCGA-97-A4M6-01 11 6452580 6452580 G A HPX Missense_Mutation p.S417L 0.17 deleterious_low_confidence(0) possibly_damaging(0.826) TCGA-97-A4M6-01 11 85375132 85375144 TCCTCCTGCAGTG - CREBZF Frame_Shift_Del p.A259Gfs*9 0.22 TCGA-97-A4M6-01 11 94197291 94197291 T C MRE11A Missense_Mutation p.K405E 0.33 deleterious(0.05) benign(0.196) TCGA-97-A4M6-01 12 121476663 121476663 G A OASL Missense_Mutation p.R38W 0.09 tolerated(0.21) benign(0.007) TCGA-97-A4M6-01 12 50867254 50867254 C T LARP4 Silent p.C534C 0.24 TCGA-97-A4M6-01 12 57992878 57992878 C G PIP4K2C Missense_Mutation p.L182V 0.23 deleterious(0) probably_damaging(0.994) TCGA-97-A4M6-01 14 21870212 21870212 G A CHD8 Silent p.G1322G 0.05 TCGA-97-A4M6-01 14 99959893 99959893 C T CCNK Silent p.R80R 0.16 TCGA-97-A4M6-01 15 78921989 78921989 C T CHRNB4 Missense_Mutation p.V220M 0.26 tolerated(0.1) probably_damaging(1) TCGA-97-A4M6-01 16 19490810 19490840 TTCTCTTTAGTCAATTCCTTCCTGGGGGAGT - TMC5 Frame_Shift_Del p.S744* 0.13 TCGA-97-A4M6-01 16 19490849 19490849 A T TMC5 Nonsense_Mutation p.R756* 0.08 TCGA-97-A4M6-01 16 29912482 29912482 G A ASPHD1 Missense_Mutation p.A64T 0.13 deleterious_low_confidence(0) benign(0.173) TCGA-97-A4M6-01 18 48581285 48581286 - C SMAD4 Frame_Shift_Ins p.A199Sfs*7 0.18 TCGA-97-A4M6-01 19 11891513 11891513 C T ZNF441 Missense_Mutation p.L292F 0.07 tolerated(0.7) possibly_damaging(0.587) TCGA-97-A4M6-01 19 48601513 48601513 G T PLA2G4C Missense_Mutation p.P161T 0.30 tolerated(0.19) benign(0.037) TCGA-97-A4M6-01 19 52146516 52146516 T G SIGLEC14 3'UTR 0.29 TCGA-97-A4M6-01 1 114224871 114224871 C T MAGI3 Intron 0.22 TCGA-97-A4M6-01 1 158577047 158577047 T A OR10Z1 Silent p.L273L 0.20 TCGA-97-A4M6-01 1 160718246 160718246 G T SLAMF7 Silent p.G106G 0.07 TCGA-97-A4M6-01 1 16360154 16360154 G A CLCNKA 3'UTR 0.20 TCGA-97-A4M6-01 1 183534839 183534839 C T NCF2 Missense_Mutation p.G334S 0.19 tolerated(0.12) benign(0.027) TCGA-97-A4M6-01 1 192150435 192150435 T A RGS18 Silent p.A99A 0.09 TCGA-97-A4M6-01 1 200558389 200558389 C A KIF14 Missense_Mutation p.V1024F 0.10 tolerated(0.63) benign(0.008) TCGA-97-A4M6-01 1 204495542 204495542 G A MDM4 Missense_Mutation p.E45K 0.10 deleterious(0.02) possibly_damaging(0.768) TCGA-97-A4M6-01 22 22749737 22749737 C G IGLV7-43 Silent p.L87L 0.21 TCGA-97-A4M6-01 22 40757204 40757204 G A ADSL Intron 0.07 TCGA-97-A4M6-01 2 141598536 141598536 T A LRP1B Missense_Mutation p.I1689F 0.17 benign(0.227) TCGA-97-A4M6-01 3 136062772 136062772 T C STAG1 Silent p.Q1116Q 0.26 TCGA-97-A4M6-01 3 47161670 47161670 A C SETD2 Splice_Site p.X1485_splice 0.30 TCGA-97-A4M6-01 3 52436883 52436883 A G BAP1 Missense_Mutation p.L632P 0.04 deleterious(0) probably_damaging(0.999) TCGA-97-A4M6-01 4 128741626 128741626 A C HSPA4L Missense_Mutation p.K573T 0.15 tolerated(0.07) benign(0.144) TCGA-97-A4M6-01 4 154517429 154517429 C A KIAA0922 Missense_Mutation p.S672Y 0.18 deleterious(0.04) possibly_damaging(0.664) TCGA-97-A4M6-01 4 40427927 40427927 T C RBM47 Silent p.T592T 0.20 TCGA-97-A4M6-01 4 84516043 84516043 A G AGPAT9 Missense_Mutation p.M262V 0.21 deleterious(0.02) probably_damaging(0.992) TCGA-97-A4M6-01 5 102260736 102260736 G A PAM Silent p.R144R 0.12 TCGA-97-A4M6-01 5 5303571 5303571 C T ADAMTS16 Missense_Mutation p.P994S 0.35 tolerated(0.17) benign(0.05) TCGA-97-A4M6-01 7 55242465 55242479 GGAATTAAGAGAAGC - EGFR In_Frame_Del p.E746_A750del 0.15 TCGA-97-A4M6-01 8 107719108 107719108 T C OXR1 Silent p.L454L 0.14 TCGA-97-A4M6-01 8 146076155 146076155 A G COMMD5 Missense_Mutation p.F190S 0.31 deleterious(0) probably_damaging(0.997) TCGA-97-A4M6-01 8 42612118 42612118 G A CHRNA6 Silent p.R109R 0.18 TCGA-97-A4M6-01 8 72964856 72964856 G A TRPA1 Missense_Mutation p.L597F 0.20 tolerated(0.71) benign(0.025) TCGA-97-A4M6-01 8 72964876 72964876 T G TRPA1 Missense_Mutation p.N590T 0.25 deleterious(0.01) possibly_damaging(0.488) TCGA-97-A4M6-01 X 102612727 102612727 G T WBP5 Missense_Mutation p.A39S 0.20 tolerated(0.65) benign(0.062) TCGA-97-A4M6-01 X 132092450 132092450 C T HS6ST2 Missense_Mutation p.G61R 0.17 deleterious_low_confidence(0) benign(0.053) TCGA-97-A4M6-01 X 78011469 78011469 C T LPAR4 Missense_Mutation p.S368F 0.27 deleterious_low_confidence(0.01) benign(0.276) TCGA-97-A4M7-01 10 100481538 100481538 G T HPSE2 Missense_Mutation p.Q278K 0.09 deleterious(0.01) benign(0.174) TCGA-97-A4M7-01 10 105174762 105174762 G T PDCD11 Missense_Mutation p.G458C 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-97-A4M7-01 10 106130801 106130801 G T CCDC147 Missense_Mutation p.G360V 0.20 deleterious(0.01) possibly_damaging(0.676) TCGA-97-A4M7-01 10 118969793 118969793 C T KCNK18 Missense_Mutation p.H380Y 0.06 tolerated_low_confidence(0.61) benign(0) TCGA-97-A4M7-01 10 123842458 123842458 G C TACC2 Missense_Mutation p.G148A 0.09 possibly_damaging(0.856) TCGA-97-A4M7-01 10 132965132 132965132 C A TCERG1L Silent p.R291R 0.16 TCGA-97-A4M7-01 10 134943064 134943064 G C GPR123 3'UTR 0.27 TCGA-97-A4M7-01 10 22675740 22675740 A G SPAG6 Missense_Mutation p.Q177R 0.27 deleterious(0.02) benign(0.139) TCGA-97-A4M7-01 10 24909340 24909340 G A ARHGAP21 Missense_Mutation p.S495L 0.12 deleterious(0.01) benign(0.403) TCGA-97-A4M7-01 10 50863282 50863282 A T CHAT Silent p.P592P 0.10 TCGA-97-A4M7-01 10 54531269 54531269 T A MBL2 Missense_Mutation p.I43F 0.10 tolerated(0.07) possibly_damaging(0.689) TCGA-97-A4M7-01 10 55568697 55568697 G T PCDH15 Missense_Mutation p.P639T 0.27 deleterious_low_confidence(0.01) unknown(0) TCGA-97-A4M7-01 10 55591088 55591088 C A PCDH15 Missense_Mutation p.V1397F 0.19 deleterious(0.01) probably_damaging(0.973) TCGA-97-A4M7-01 10 6157570 6157570 A T RBM17 3'UTR 0.08 TCGA-97-A4M7-01 10 70549551 70549551 G T CCAR1 Missense_Mutation p.S1091I 0.08 tolerated(0.15) unknown(0) TCGA-97-A4M7-01 10 7618968 7618968 C A ITIH5 Missense_Mutation p.D476Y 0.11 deleterious(0.01) possibly_damaging(0.677) TCGA-97-A4M7-01 10 87628878 87628878 C A GRID1 Silent p.V280V 0.20 TCGA-97-A4M7-01 10 91144408 91144408 C A IFIT1B Silent p.I446I 0.10 TCGA-97-A4M7-01 10 95552634 95552634 G T LGI1 Missense_Mutation p.S213I 0.10 deleterious(0) benign(0.257) TCGA-97-A4M7-01 10 96580336 96580336 A T CYP2C19 Silent p.T301T 0.10 TCGA-97-A4M7-01 11 102665881 102665881 C G MMP1 Intron 0.09 TCGA-97-A4M7-01 11 104869617 104869617 G T CASP5 Missense_Mutation p.T377K 0.18 deleterious(0.01) possibly_damaging(0.869) TCGA-97-A4M7-01 11 123814000 123814000 C A OR6T1 Missense_Mutation p.W182C 0.09 tolerated(0.19) benign(0.02) TCGA-97-A4M7-01 11 123894445 123894445 C A OR10G9 Silent p.S242S 0.14 TCGA-97-A4M7-01 11 1266943 1266943 A G MUC5B Missense_Mutation p.R2945G 0.11 unknown(0) TCGA-97-A4M7-01 11 134182324 134182324 T A GLB1L3 Missense_Mutation p.Y457N 0.18 deleterious(0) probably_damaging(1) TCGA-97-A4M7-01 11 18195010 18195010 C A MRGPRX4 Silent p.A69A 0.12 TCGA-97-A4M7-01 11 18424492 18424492 G T LDHA Missense_Mutation p.G204V 0.18 deleterious(0.04) probably_damaging(0.989) TCGA-97-A4M7-01 11 21392415 21392415 C A NELL1 Silent p.G522G 0.14 TCGA-97-A4M7-01 11 281643 281643 G A NLRP6 Missense_Mutation p.A637T 0.09 deleterious(0) possibly_damaging(0.871) TCGA-97-A4M7-01 11 43284737 43284737 T A HNRNPKP3 RNA 0.19 TCGA-97-A4M7-01 11 44931364 44931364 C A TSPAN18 Missense_Mutation p.L58I 0.17 tolerated(0.76) benign(0.049) TCGA-97-A4M7-01 11 4790796 4790796 C A OR51F1 Missense_Mutation p.V118L 0.19 tolerated(1) benign(0.007) TCGA-97-A4M7-01 11 48157811 48157811 C T PTPRJ Silent p.H612H 0.06 TCGA-97-A4M7-01 11 4903652 4903652 G T OR51T1 Nonsense_Mutation p.E202* 0.16 TCGA-97-A4M7-01 11 5536432 5536432 G T UBQLNL Missense_Mutation p.L414I 0.17 tolerated(0.43) benign(0.137) TCGA-97-A4M7-01 11 55761961 55761961 G T OR5F1 Silent p.L47L 0.17 TCGA-97-A4M7-01 11 59271913 59271913 C A OR4D11 Missense_Mutation p.L289M 0.17 deleterious(0) probably_damaging(0.999) TCGA-97-A4M7-01 11 59860291 59860291 T A MS4A2 Silent p.I116I 0.24 TCGA-97-A4M7-01 11 59860293 59860293 T A MS4A2 Missense_Mutation p.I117K 0.23 deleterious(0.01) benign(0.175) TCGA-97-A4M7-01 11 6023782 6023782 G A OR56A4 Silent p.A199A 0.20 TCGA-97-A4M7-01 11 60694737 60694737 C T TMEM132A Silent p.D54D 0.06 TCGA-97-A4M7-01 11 64575565 64575565 T G MEN1 Missense_Mutation p.K156T 0.18 deleterious(0) probably_damaging(0.989) TCGA-97-A4M7-01 11 6648079 6648079 C A DCHS1 Missense_Mutation p.R2064L 0.19 deleterious(0.02) benign(0.144) TCGA-97-A4M7-01 11 67431212 67431212 C A ALDH3B2 Missense_Mutation p.E298D 0.24 tolerated(0.56) benign(0.009) TCGA-97-A4M7-01 11 70031709 70031709 C G ANO1 Missense_Mutation p.R868G 0.17 deleterious(0) probably_damaging(0.98) TCGA-97-A4M7-01 11 78204213 78204213 G C NARS2 Missense_Mutation p.P240A 0.06 deleterious(0) probably_damaging(0.973) TCGA-97-A4M7-01 11 95825828 95825828 T C MAML2 Missense_Mutation p.H456R 0.10 benign(0.32) TCGA-97-A4M7-01 12 10560358 10560358 C A KLRC4 Missense_Mutation p.W124L 0.13 deleterious(0) benign(0.238) TCGA-97-A4M7-01 12 10560360 10560360 C A KLRC4 Missense_Mutation p.E123D 0.13 tolerated(0.22) possibly_damaging(0.843) TCGA-97-A4M7-01 12 106717429 106717429 G T TCP11L2 Intron 0.16 TCGA-97-A4M7-01 12 10783774 10783774 C A STYK1 Missense_Mutation p.Q107H 0.21 deleterious(0) possibly_damaging(0.633) TCGA-97-A4M7-01 12 108012088 108012088 G T BTBD11 Silent p.L795L 0.19 TCGA-97-A4M7-01 12 113424976 113424976 A T OAS2 Missense_Mutation p.K104M 0.20 deleterious(0.04) benign(0.125) TCGA-97-A4M7-01 12 120589093 120589093 C G GCN1L1 Missense_Mutation p.D1389H 0.23 possibly_damaging(0.907) TCGA-97-A4M7-01 12 129431955 129431955 G T GLT1D1 Silent p.A164A 0.12 TCGA-97-A4M7-01 12 130934762 130934762 G A RIMBP2 Silent p.L171L 0.10 TCGA-97-A4M7-01 12 133210946 133210946 C T POLE Missense_Mutation p.G1944R 0.16 tolerated(0.47) benign(0.001) TCGA-97-A4M7-01 12 13906434 13906434 C A GRIN2B Missense_Mutation p.G276V 0.20 deleterious(0) probably_damaging(1) TCGA-97-A4M7-01 12 1703114 1703114 T A FBXL14 Missense_Mutation p.Y40F 0.25 deleterious(0.04) probably_damaging(0.986) TCGA-97-A4M7-01 12 20874769 20874769 G T SLCO1C1 Missense_Mutation p.Q269H 0.19 deleterious(0.01) benign(0.14) TCGA-97-A4M7-01 12 21229499 21229499 T A SLCO1B7 Missense_Mutation p.L574M 0.19 deleterious(0.01) possibly_damaging(0.712) TCGA-97-A4M7-01 12 29786150 29786150 C T TMTC1 Missense_Mutation p.R353Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-97-A4M7-01 12 30863445 30863445 T G CAPRIN2 Intron 0.16 TCGA-97-A4M7-01 12 333166 333166 G A SLC6A13 Missense_Mutation p.L435F 0.10 deleterious(0) probably_damaging(0.93) TCGA-97-A4M7-01 12 3782739 3782739 G A EFCAB4B Missense_Mutation p.L182F 0.28 deleterious(0) probably_damaging(0.951) TCGA-97-A4M7-01 12 49854771 49854772 - T SPATS2 5'UTR 0.22 TCGA-97-A4M7-01 12 56031336 56031336 C A OR10P1 Missense_Mutation p.R221S 0.14 tolerated(0.25) benign(0.12) TCGA-97-A4M7-01 12 58021458 58021458 T A B4GALNT1 Missense_Mutation p.T443S 0.10 deleterious(0) possibly_damaging(0.666) TCGA-97-A4M7-01 12 6161928 6161928 T A VWF Missense_Mutation p.Q656L 0.22 tolerated(0.08) probably_damaging(0.968) TCGA-97-A4M7-01 12 69145871 69145871 G T SLC35E3 Missense_Mutation p.Q191H 0.19 deleterious(0) possibly_damaging(0.771) TCGA-97-A4M7-01 12 71050494 71050494 G T PTPRR Missense_Mutation p.R624S 0.20 deleterious(0.01) probably_damaging(1) TCGA-97-A4M7-01 12 7254465 7254465 C T C1RL Intron 0.27 TCGA-97-A4M7-01 12 78598856 78598856 T A NAV3 Missense_Mutation p.S2304T 0.14 tolerated(0.19) benign(0.002) TCGA-97-A4M7-01 13 102220103 102220103 G T ITGBL1 Missense_Mutation p.D124Y 0.11 tolerated(0.14) possibly_damaging(0.608) TCGA-97-A4M7-01 13 103338651 103338651 G T METTL21C Missense_Mutation p.D175E 0.17 tolerated(0.13) benign(0.307) TCGA-97-A4M7-01 13 110814772 110814772 C A COL4A1 Missense_Mutation p.G1423C 0.20 unknown(0) TCGA-97-A4M7-01 13 111545442 111545442 C A ANKRD10 Silent p.V208V 0.11 TCGA-97-A4M7-01 13 21442842 21442842 T A XPO4 Splice_Site p.X24_splice 0.20 TCGA-97-A4M7-01 13 29600023 29600023 C G MTUS2 Silent p.P406P 0.11 TCGA-97-A4M7-01 13 31309743 31309743 A G ALOX5AP Translation_Start_Site p.M1? 0.09 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-97-A4M7-01 13 36049135 36049135 G T MAB21L1 3'UTR 0.14 TCGA-97-A4M7-01 13 42872727 42872727 G T AKAP11 Missense_Mutation p.R137M 0.10 deleterious(0.01) probably_damaging(0.919) TCGA-97-A4M7-01 13 46357953 46357953 G T SIAH3 Silent p.P125P 0.14 TCGA-97-A4M7-01 14 106209346 106209346 G T IGHG1 Silent p.G21G 0.20 TCGA-97-A4M7-01 14 19553629 19553629 G T POTEG Missense_Mutation p.W71C 0.06 tolerated_low_confidence(1) benign(0) TCGA-97-A4M7-01 14 20019901 20019901 G T POTEM Missense_Mutation p.P107H 0.15 deleterious_low_confidence(0) benign(0.265) TCGA-97-A4M7-01 14 23531434 23531434 G A ACIN1 Silent p.V1072V 0.06 TCGA-97-A4M7-01 14 23745440 23745441 GG A HOMEZ Frame_Shift_Del p.Q333Kfs*57 0.14 TCGA-97-A4M7-01 14 30105570 30105570 C A PRKD1 Missense_Mutation p.M372I 0.10 tolerated(0.46) benign(0.001) TCGA-97-A4M7-01 14 50862540 50862540 C A CDKL1 Missense_Mutation p.G17V 0.20 deleterious(0) probably_damaging(1) TCGA-97-A4M7-01 14 67862182 67862182 C A PLEK2 Missense_Mutation p.G109V 0.17 tolerated(0.11) benign(0.004) TCGA-97-A4M7-01 14 80677634 80677634 C A DIO2 Missense_Mutation p.R61L 0.13 tolerated(0.15) benign(0.123) TCGA-97-A4M7-01 14 80971335 80971335 T C CEP128 Missense_Mutation p.H1034R 0.18 tolerated(0.39) benign(0.003) TCGA-97-A4M7-01 14 94046715 94046715 G A UNC79 Missense_Mutation p.R708Q 0.19 deleterious(0.03) possibly_damaging(0.732) TCGA-97-A4M7-01 14 95570375 95570375 T G DICER1 Missense_Mutation p.N1120H 0.22 tolerated(0.07) benign(0.229) TCGA-97-A4M7-01 15 100672325 100672325 C A ADAMTS17 Silent p.T536T 0.23 TCGA-97-A4M7-01 15 28514451 28514451 G A HERC2 Silent p.F463F 0.13 TCGA-97-A4M7-01 15 33927958 33927958 G T RYR3 Missense_Mutation p.G1107C 0.21 probably_damaging(0.941) TCGA-97-A4M7-01 15 65756107 65756107 C T DPP8 Missense_Mutation p.G671S 0.18 deleterious(0) probably_damaging(0.999) TCGA-97-A4M7-01 15 77907357 77907357 G T LINGO1 Missense_Mutation p.P298T 0.17 deleterious(0.01) probably_damaging(0.986) TCGA-97-A4M7-01 15 79088945 79088945 G T ADAMTS7 Missense_Mutation p.T269N 0.17 deleterious(0) probably_damaging(0.995) TCGA-97-A4M7-01 15 84442394 84442394 G C ADAMTSL3 Missense_Mutation p.L103F 0.15 deleterious(0) probably_damaging(0.911) TCGA-97-A4M7-01 15 89417156 89417156 C A ACAN Silent p.R2473R 0.09 TCGA-97-A4M7-01 16 1035113 1035113 C G SOX8 Silent p.P356P 0.35 TCGA-97-A4M7-01 16 11933609 11933609 G A RSL1D1 Silent p.D363D 0.05 TCGA-97-A4M7-01 16 20471548 20471548 C A ACSM2A Missense_Mutation p.Q38K 0.17 tolerated(0.26) benign(0.005) TCGA-97-A4M7-01 16 20566665 20566665 A G ACSM2B Silent p.C174C 0.07 TCGA-97-A4M7-01 16 21042519 21042519 C G DNAH3 Missense_Mutation p.V1763L 0.29 deleterious(0.02) benign(0.126) TCGA-97-A4M7-01 16 29899989 29899989 G A SEZ6L2 Missense_Mutation p.T304M 0.29 tolerated(0.4) possibly_damaging(0.49) TCGA-97-A4M7-01 16 31424548 31424548 A T ITGAD Missense_Mutation p.K659N 0.23 deleterious(0.01) possibly_damaging(0.703) TCGA-97-A4M7-01 16 50344760 50344760 G T ADCY7 Missense_Mutation p.G775C 0.35 tolerated(0.15) benign(0.01) TCGA-97-A4M7-01 16 61891107 61891107 C A CDH8 Missense_Mutation p.D195Y 0.14 deleterious(0.01) probably_damaging(1) TCGA-97-A4M7-01 16 75690287 75690287 C T TERF2IP Silent p.N326N 0.05 TCGA-97-A4M7-01 16 76461394 76461394 C A CNTNAP4 Missense_Mutation p.L121I 0.10 deleterious(0) probably_damaging(0.914) TCGA-97-A4M7-01 16 77401463 77401463 G T ADAMTS18 Missense_Mutation p.P218H 0.25 tolerated(0.11) benign(0.289) TCGA-97-A4M7-01 16 84005730 84005730 G T NECAB2 Intron 0.15 TCGA-97-A4M7-01 16 8868746 8868746 G T ABAT Splice_Site p.X319_splice 0.07 TCGA-97-A4M7-01 17 10408826 10408826 T C MYH1 Missense_Mutation p.Y726C 0.23 deleterious(0.01) probably_damaging(0.989) TCGA-97-A4M7-01 17 16612467 16612467 G T CCDC144A Nonsense_Mutation p.E366* 0.13 TCGA-97-A4M7-01 17 18925292 18925292 C A GRAP Missense_Mutation p.V212L 0.40 deleterious(0) probably_damaging(0.999) TCGA-97-A4M7-01 17 21825423 21825423 C A FAM27L RNA 0.14 TCGA-97-A4M7-01 17 31039046 31039046 C A MYO1D Missense_Mutation p.R694L 0.24 deleterious(0) possibly_damaging(0.86) TCGA-97-A4M7-01 17 3195605 3195605 C T OR3A1 Missense_Mutation p.R91H 0.07 tolerated(1) benign(0) TCGA-97-A4M7-01 17 33454273 33454273 C T FNDC8 Missense_Mutation p.P141L 0.19 deleterious_low_confidence(0) benign(0.013) TCGA-97-A4M7-01 17 33904285 33904285 C T PEX12 Missense_Mutation p.R151H 0.07 tolerated(0.57) benign(0.001) TCGA-97-A4M7-01 17 3513806 3513806 T C SHPK 3'UTR 0.16 TCGA-97-A4M7-01 17 39036944 39036944 G T KRT20 Silent p.T184T 0.20 TCGA-97-A4M7-01 17 39262141 39262141 C A KRTAP4-9 Silent p.S167S 0.25 TCGA-97-A4M7-01 17 39846059 39846059 G T EIF1 Missense_Mutation p.D21Y 0.13 deleterious(0.02) possibly_damaging(0.714) TCGA-97-A4M7-01 17 42340064 42340064 G T SLC4A1 Missense_Mutation p.L16M 0.08 tolerated(0.15) probably_damaging(0.969) TCGA-97-A4M7-01 17 45369932 45369932 C A ITGB3 Nonsense_Mutation p.S563* 0.16 TCGA-97-A4M7-01 17 47583739 47583739 C A NGFR Nonsense_Mutation p.S96* 0.28 TCGA-97-A4M7-01 17 51900545 51900545 A C KIF2B Silent p.R51R 0.10 TCGA-97-A4M7-01 17 61949794 61949794 G T CSH2 Intron 0.18 TCGA-97-A4M7-01 17 6367540 6367540 C T PITPNM3 Silent p.P702P 0.07 TCGA-97-A4M7-01 17 73658964 73658964 C T RECQL5 Silent p.Q122Q 0.18 TCGA-97-A4M7-01 18 14537800 14537800 C G POTEC Missense_Mutation p.K270N 0.10 deleterious(0) benign(0.096) TCGA-97-A4M7-01 18 21523882 21523882 A G LAMA3 Missense_Mutation p.K3053E 0.11 possibly_damaging(0.794) TCGA-97-A4M7-01 18 28714742 28714742 G T DSC1 Silent p.R557R 0.14 TCGA-97-A4M7-01 18 30873266 30873266 A G CCDC178 Missense_Mutation p.Y345H 0.17 tolerated(0.05) benign(0.051) TCGA-97-A4M7-01 18 31324851 31324851 G C ASXL3 Missense_Mutation p.R1680T 0.07 possibly_damaging(0.529) TCGA-97-A4M7-01 18 54362369 54362369 G T WDR7 Missense_Mutation p.V433L 0.29 deleterious(0.01) probably_damaging(0.99) TCGA-97-A4M7-01 18 56936405 56936405 G T RAX Missense_Mutation p.P291H 0.30 tolerated(0.86) possibly_damaging(0.867) TCGA-97-A4M7-01 18 61322888 61322888 C A SERPINB3 3'UTR 0.07 TCGA-97-A4M7-01 18 63547961 63547961 T G CDH7 Missense_Mutation p.L730R 0.18 deleterious(0) probably_damaging(0.998) TCGA-97-A4M7-01 18 67698116 67698116 C T RTTN Silent p.L1881L 0.20 TCGA-97-A4M7-01 18 76753878 76753878 G A SALL3 Silent p.T629T 0.29 TCGA-97-A4M7-01 19 10220806 10220806 G T PPAN Missense_Mutation p.G236W 0.14 deleterious(0.02) probably_damaging(1) TCGA-97-A4M7-01 19 1487180 1487180 C A PCSK4 Missense_Mutation p.G272V 0.09 deleterious(0) probably_damaging(0.998) TCGA-97-A4M7-01 19 1487181 1487181 C A PCSK4 Missense_Mutation p.G272C 0.09 deleterious(0) probably_damaging(1) TCGA-97-A4M7-01 19 15132452 15132452 C T CCDC105 Silent p.L356L 0.25 TCGA-97-A4M7-01 19 17660439 17660439 G T FAM129C Intron 0.20 TCGA-97-A4M7-01 19 19378872 19378872 G T TM6SF2 Missense_Mutation p.L212I 0.23 tolerated(0.09) benign(0.015) TCGA-97-A4M7-01 19 20307866 20307866 G T ZNF486 Missense_Mutation p.G116V 0.11 deleterious(0.01) possibly_damaging(0.785) TCGA-97-A4M7-01 19 22000689 22000689 C A ZNF43 Splice_Site p.X77_splice 0.14 TCGA-97-A4M7-01 19 22817249 22817249 G T ZNF492 5'UTR 0.18 TCGA-97-A4M7-01 19 2933766 2933766 C T ZNF77 Silent p.E453E 0.15 TCGA-97-A4M7-01 19 30934842 30934842 C A ZNF536 Missense_Mutation p.R125S 0.29 deleterious(0.02) probably_damaging(0.994) TCGA-97-A4M7-01 19 35786543 35786543 G T MAG Missense_Mutation p.W25L 0.13 deleterious(0) probably_damaging(0.997) TCGA-97-A4M7-01 19 36398148 36398148 C G TYROBP Missense_Mutation p.R83P 0.14 tolerated(0.25) benign(0.022) TCGA-97-A4M7-01 19 36506996 36506996 G T CLIP3 3'UTR 0.23 TCGA-97-A4M7-01 19 38126847 38126847 C A ZFP30 Missense_Mutation p.A199S 0.13 tolerated(1) benign(0.072) TCGA-97-A4M7-01 19 39881998 39881998 G T MED29 5'UTR 0.11 TCGA-97-A4M7-01 19 40395981 40395981 C A FCGBP Missense_Mutation p.M2472I 0.23 benign(0.002) TCGA-97-A4M7-01 19 41758860 41758860 G A AXL Silent p.G638G 0.07 TCGA-97-A4M7-01 19 4231320 4231320 G T EBI3 Missense_Mutation p.R67M 0.19 deleterious(0) probably_damaging(0.992) TCGA-97-A4M7-01 19 43234158 43234158 T G PSG3 Missense_Mutation p.N254H 0.18 tolerated(0.09) benign(0.098) TCGA-97-A4M7-01 19 43679575 43679575 A C PSG5 Silent p.R252R 0.09 TCGA-97-A4M7-01 19 44891051 44891051 C A ZNF285 Silent p.G452G 0.19 TCGA-97-A4M7-01 19 4529233 4529233 G A PLIN5 Silent p.S124S 0.23 TCGA-97-A4M7-01 19 51983815 51983815 T G CEACAM18 Missense_Mutation p.V155G 0.07 deleterious(0) probably_damaging(0.99) TCGA-97-A4M7-01 19 52132748 52132748 A G SIGLEC5 Missense_Mutation p.L188P 0.10 tolerated(0.06) probably_damaging(0.919) TCGA-97-A4M7-01 19 54759273 54759273 G T LILRB5 Silent p.S276S 0.17 TCGA-97-A4M7-01 19 54783871 54783871 G T LILRB2 Missense_Mutation p.P44T 0.12 tolerated(0.06) possibly_damaging(0.823) TCGA-97-A4M7-01 19 55399467 55399467 C A FCAR Missense_Mutation p.P152Q 0.26 tolerated(0.07) probably_damaging(0.952) TCGA-97-A4M7-01 19 55816220 55816220 G T BRSK1 Missense_Mutation p.R550M 0.16 deleterious(0) possibly_damaging(0.507) TCGA-97-A4M7-01 19 55816221 55816221 G T BRSK1 Missense_Mutation p.R550S 0.17 deleterious(0) benign(0.227) TCGA-97-A4M7-01 19 56952761 56952761 C A ZNF667 Missense_Mutation p.A535S 0.19 tolerated(0.19) benign(0.076) TCGA-97-A4M7-01 19 57327305 57327305 G A PEG3 Silent p.I835I 0.19 TCGA-97-A4M7-01 19 5754237 5754237 G A CATSPERD Missense_Mutation p.G420D 0.23 deleterious(0.05) possibly_damaging(0.589) TCGA-97-A4M7-01 19 57646871 57646871 G T ZIM3 Silent p.S278S 0.21 TCGA-97-A4M7-01 19 6185606 6185606 T A ACSBG2 Silent p.S494S 0.18 TCGA-97-A4M7-01 19 9062708 9062708 G A MUC16 Silent p.S8246S 0.17 TCGA-97-A4M7-01 1 108292216 108292216 C A VAV3 Missense_Mutation p.R420S 0.12 deleterious(0.01) benign(0.062) TCGA-97-A4M7-01 1 108298048 108298048 C A VAV3 Splice_Site p.X391_splice 0.22 TCGA-97-A4M7-01 1 108681794 108681794 C G SLC25A24 Missense_Mutation p.D379H 0.07 tolerated(0.07) possibly_damaging(0.832) TCGA-97-A4M7-01 1 11562886 11562886 G A PTCHD2 Silent p.E416E 0.13 TCGA-97-A4M7-01 1 12175698 12175698 C A TNFRSF8 Silent p.G286G 0.12 TCGA-97-A4M7-01 1 12884630 12884630 A T PRAMEF11 3'UTR 0.14 TCGA-97-A4M7-01 1 152279008 152279008 G T FLG Missense_Mutation p.T2785N 0.09 benign(0.255) TCGA-97-A4M7-01 1 152573506 152573506 G A LCE3C 3'UTR 0.35 TCGA-97-A4M7-01 1 153932866 153932866 C A SLC39A1 Missense_Mutation p.R228L 0.16 deleterious(0.02) benign(0.421) TCGA-97-A4M7-01 1 154296851 154296851 C A AQP10 Missense_Mutation p.H267Q 0.20 deleterious(0) possibly_damaging(0.742) TCGA-97-A4M7-01 1 157559231 157559232 - A FCRL4 Frame_Shift_Ins p.V24Cfs*71 0.12 TCGA-97-A4M7-01 1 158390364 158390364 G T OR10K2 Missense_Mutation p.A98D 0.22 deleterious(0) possibly_damaging(0.617) TCGA-97-A4M7-01 1 160721186 160721186 T C SLAMF7 Missense_Mutation p.I274T 0.25 tolerated(0.25) benign(0.014) TCGA-97-A4M7-01 1 171174711 171174711 C A FMO2 Missense_Mutation p.P374H 0.44 deleterious(0) probably_damaging(1) TCGA-97-A4M7-01 1 175331843 175331844 - G TNR Frame_Shift_Ins p.R937Pfs*43 0.13 TCGA-97-A4M7-01 1 176526316 176526316 G T PAPPA2 Silent p.A286A 0.33 TCGA-97-A4M7-01 1 190423904 190423904 A G BRINP3 Silent p.H39H 0.22 TCGA-97-A4M7-01 1 207640225 207640225 G - CR2 Frame_Shift_Del p.P140Rfs*8 0.12 TCGA-97-A4M7-01 1 210857394 210857395 - G KCNH1 Frame_Shift_Ins p.D734Gfs*22 0.24 TCGA-97-A4M7-01 1 212792486 212792486 G T ATF3 Intron 0.18 TCGA-97-A4M7-01 1 214178587 214178587 T A PROX1 Missense_Mutation p.M602K 0.20 deleterious(0) probably_damaging(0.999) TCGA-97-A4M7-01 1 216246234 216246234 C T USH2A Missense_Mutation p.A1952T 0.19 benign(0.005) TCGA-97-A4M7-01 1 217784235 217784235 T A GPATCH2 Missense_Mutation p.R338S 0.17 deleterious(0.01) benign(0.103) TCGA-97-A4M7-01 1 228520564 228520564 C A OBSCN Missense_Mutation p.T6176K 0.06 probably_damaging(0.999) TCGA-97-A4M7-01 1 233394593 233394593 C T PCNXL2 Missense_Mutation p.G339R 0.22 tolerated_low_confidence(0.25) benign(0.019) TCGA-97-A4M7-01 1 23520465 23520465 G A HTR1D Missense_Mutation p.T83I 0.19 deleterious(0) probably_damaging(0.999) TCGA-97-A4M7-01 1 247588376 247588376 C A NLRP3 Missense_Mutation p.T544K 0.17 tolerated(0.91) benign(0.001) TCGA-97-A4M7-01 1 247768914 247768914 A C OR2G3 Silent p.L9L 0.26 TCGA-97-A4M7-01 1 248085042 248085042 A C OR2T8 Silent p.S241S 0.10 TCGA-97-A4M7-01 1 248487825 248487825 C A OR2M7 Nonsense_Mutation p.G16* 0.12 TCGA-97-A4M7-01 1 248487826 248487826 C A OR2M7 Silent p.L15L 0.12 TCGA-97-A4M7-01 1 248685794 248685794 C A OR2G6 Missense_Mutation p.P283T 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-97-A4M7-01 1 34254306 34254306 C T CSMD2 Missense_Mutation p.G480S 0.17 deleterious(0.04) probably_damaging(0.951) TCGA-97-A4M7-01 1 38227513 38227513 G T EPHA10 Silent p.G138G 0.20 TCGA-97-A4M7-01 1 46976223 46976223 A T DMBX1 Missense_Mutation p.Q77L 0.17 deleterious(0) possibly_damaging(0.885) TCGA-97-A4M7-01 1 50575544 50575544 C G ELAVL4 Intron 0.35 TCGA-97-A4M7-01 1 52280232 52280232 G - NRD1 Frame_Shift_Del p.P605Qfs*63 0.13 TCGA-97-A4M7-01 1 57285073 57285073 C - C1orf168 5'Flank 0.25 TCGA-97-A4M7-01 1 59004730 59004730 T A OMA1 Silent p.T79T 0.21 TCGA-97-A4M7-01 1 71512772 71512772 G T PTGER3 Missense_Mutation p.H163Q 0.19 deleterious(0.03) probably_damaging(1) TCGA-97-A4M7-01 1 74701813 74701813 C T FPGT-TNNI3K Missense_Mutation p.S137L 0.16 deleterious_low_confidence(0) benign(0.228) TCGA-97-A4M7-01 1 75602877 75602877 C A LHX8 Silent p.S66S 0.19 TCGA-97-A4M7-01 1 76387895 76387895 G C ASB17 Missense_Mutation p.T184R 0.11 deleterious(0.01) benign(0.021) TCGA-97-A4M7-01 1 99771331 99771331 G C LPPR4 Missense_Mutation p.D353H 0.07 deleterious(0.01) possibly_damaging(0.762) TCGA-97-A4M7-01 20 18724844 18724844 G T DTD1 Missense_Mutation p.R193L 0.08 tolerated_low_confidence(0.19) benign(0) TCGA-97-A4M7-01 20 2845915 2845924 ACAAGCGTGC - VPS16 Frame_Shift_Del p.N709Kfs*18 0.20 TCGA-97-A4M7-01 20 30451725 30451725 T A DUSP15 Missense_Mutation p.N83I 0.10 deleterious(0.02) possibly_damaging(0.807) TCGA-97-A4M7-01 20 35060337 35060337 C T DLGAP4 Missense_Mutation p.R73C 0.18 deleterious(0.02) probably_damaging(0.984) TCGA-97-A4M7-01 20 44054450 44054450 G T PIGT Missense_Mutation p.G574V 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-97-A4M7-01 20 44590776 44590776 C A ZNF335 Nonsense_Mutation p.E527* 0.20 TCGA-97-A4M7-01 20 51871727 51871727 C A TSHZ2 Missense_Mutation p.P577H 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-97-A4M7-01 20 62198344 62198344 T A HELZ2 Silent p.P789P 0.18 TCGA-97-A4M7-01 21 10942973 10942973 A T TPTE Missense_Mutation p.I205N 0.07 deleterious(0) probably_damaging(0.961) TCGA-97-A4M7-01 21 47407540 47407540 C A COL6A1 Missense_Mutation p.P259Q 0.19 tolerated(0.11) unknown(0) TCGA-97-A4M7-01 22 22277613 22277613 A T PPM1F Missense_Mutation p.I406N 0.12 deleterious(0) probably_damaging(1) TCGA-97-A4M7-01 22 40037129 40037129 C G CACNA1I Missense_Mutation p.P333R 0.10 deleterious(0) probably_damaging(0.985) TCGA-97-A4M7-01 22 40080474 40080474 C A CACNA1I Missense_Mutation p.P2000T 0.19 deleterious(0) possibly_damaging(0.641) TCGA-97-A4M7-01 22 40139818 40139818 C A ENTHD1 Nonsense_Mutation p.E564* 0.19 TCGA-97-A4M7-01 22 42204967 42204967 A T CCDC134 Missense_Mutation p.R25W 0.13 deleterious(0) possibly_damaging(0.513) TCGA-97-A4M7-01 2 103010991 103010991 G T IL18R1 Nonsense_Mutation p.E392* 0.11 TCGA-97-A4M7-01 2 105705441 105705441 G T MRPS9 Splice_Site p.X164_splice 0.15 TCGA-97-A4M7-01 2 113819740 113819740 C A IL36RN Missense_Mutation p.A52D 0.11 tolerated(0.53) benign(0.023) TCGA-97-A4M7-01 2 128184758 128184758 C A PROC Silent p.A252A 0.22 TCGA-97-A4M7-01 2 132021714 132021714 C A POTEE Missense_Mutation p.R896S 0.11 deleterious_low_confidence(0.03) probably_damaging(0.948) TCGA-97-A4M7-01 2 139429123 139429123 G C NXPH2 Missense_Mutation p.P55R 0.08 deleterious(0) probably_damaging(0.997) TCGA-97-A4M7-01 2 144709601 144709601 C A GTDC1 Missense_Mutation p.R414M 0.21 tolerated(0.13) probably_damaging(0.974) TCGA-97-A4M7-01 2 152108172 152108172 T A RBM43 Missense_Mutation p.S108C 0.27 tolerated(0.11) benign(0.012) TCGA-97-A4M7-01 2 159028675 159028675 G T CCDC148 Missense_Mutation p.P576T 0.12 deleterious(0) probably_damaging(0.958) TCGA-97-A4M7-01 2 162804089 162804089 T G SLC4A10 Missense_Mutation p.L706W 0.18 tolerated(0.06) benign(0.01) TCGA-97-A4M7-01 2 163253386 163253386 C G KCNH7 Missense_Mutation p.R826T 0.14 deleterious(0.01) probably_damaging(0.945) TCGA-97-A4M7-01 2 168104562 168104562 C A XIRP2 Silent p.S2220S 0.14 TCGA-97-A4M7-01 2 196801468 196801468 G T DNAH7 Missense_Mutation p.L1043M 0.14 deleterious(0.02) possibly_damaging(0.789) TCGA-97-A4M7-01 2 203332400 203332400 A T BMPR2 Missense_Mutation p.T136S 0.17 tolerated(0.53) benign(0.055) TCGA-97-A4M7-01 2 207437885 207437885 A T ADAM23 Missense_Mutation p.D568V 0.17 deleterious(0) probably_damaging(1) TCGA-97-A4M7-01 2 209345829 209345829 T G PTH2R Missense_Mutation p.V339G 0.21 deleterious(0) probably_damaging(0.983) TCGA-97-A4M7-01 2 210558606 210558606 A G MAP2 Missense_Mutation p.K571R 0.08 deleterious(0.01) probably_damaging(0.923) TCGA-97-A4M7-01 2 21233649 21233649 T A APOB Missense_Mutation p.S2031C 0.23 possibly_damaging(0.781) TCGA-97-A4M7-01 2 219127845 219127845 C A GPBAR1 Missense_Mutation p.A133D 0.28 deleterious(0.03) benign(0.327) TCGA-97-A4M7-01 2 28853532 28853532 G T PLB1 Splice_Site p.X1299_splice 0.27 TCGA-97-A4M7-01 2 31457399 31457399 G C EHD3 5'UTR 0.14 TCGA-97-A4M7-01 2 44047066 44047066 G T ABCG5 Missense_Mutation p.S546Y 0.17 deleterious(0) probably_damaging(0.968) TCGA-97-A4M7-01 2 50723069 50723069 G T NRXN1 Missense_Mutation p.A1055D 0.29 tolerated(0.06) benign(0.241) TCGA-97-A4M7-01 2 9630407 9630407 A G ADAM17 Missense_Mutation p.F792L 0.15 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-97-A4M7-01 2 97017722 97017722 C - NCAPH Frame_Shift_Del p.P292Qfs*3 0.09 TCGA-97-A4M7-01 2 99685368 99685368 T C TSGA10 Missense_Mutation p.N401D 0.11 tolerated(0.48) benign(0.004) TCGA-97-A4M7-01 3 111936360 111936361 TG - SLC9C1 Frame_Shift_Del p.T573Sfs*5 0.08 TCGA-97-A4M7-01 3 112356938 112356938 C G CCDC80 Silent p.T605T 0.07 TCGA-97-A4M7-01 3 121615315 121615315 G C SLC15A2 Missense_Mutation p.E56D 0.05 deleterious(0) probably_damaging(0.978) TCGA-97-A4M7-01 3 150396264 150396264 A G FAM194A Missense_Mutation p.F397L 0.11 tolerated(0.67) benign(0.002) TCGA-97-A4M7-01 3 154145374 154145374 G - GPR149 Frame_Shift_Del p.H369Tfs*44 0.09 TCGA-97-A4M7-01 3 155571391 155571391 G A SLC33A1 Silent p.V132V 0.14 TCGA-97-A4M7-01 3 178560535 178560535 C G KCNMB2 Missense_Mutation p.S173C 0.36 deleterious(0.02) possibly_damaging(0.733) TCGA-97-A4M7-01 3 19574939 19574939 T A KCNH8 Missense_Mutation p.V891E 0.11 deleterious(0) benign(0.312) TCGA-97-A4M7-01 3 47098519 47098519 G C SETD2 Missense_Mutation p.S2252C 0.14 deleterious(0.03) possibly_damaging(0.784) TCGA-97-A4M7-01 3 49841970 49841970 C A FAM212A Missense_Mutation p.S138R 0.16 tolerated(0.18) benign(0.007) TCGA-97-A4M7-01 3 81635341 81635341 C A GBE1 Missense_Mutation p.D413Y 0.07 deleterious(0) probably_damaging(0.998) TCGA-97-A4M7-01 3 89390960 89390960 C T EPHA3 Silent p.I342I 0.05 TCGA-97-A4M7-01 3 9991566 9991566 G A PRRT3 Silent p.A78A 0.12 TCGA-97-A4M7-01 4 104116370 104116370 G A CENPE Silent p.L126L 0.24 TCGA-97-A4M7-01 4 111470922 111470922 C T ENPEP Missense_Mutation p.S794F 0.24 deleterious(0.01) probably_damaging(0.964) TCGA-97-A4M7-01 4 114179244 114179244 C A ANK2 Missense_Mutation p.N409K 0.09 probably_damaging(0.988) TCGA-97-A4M7-01 4 114179245 114179245 C A ANK2 Missense_Mutation p.R410S 0.09 probably_damaging(0.932) TCGA-97-A4M7-01 4 155157673 155157673 C T DCHS2 Missense_Mutation p.G2256R 0.08 deleterious(0.01) probably_damaging(0.914) TCGA-97-A4M7-01 4 155505708 155505708 A T FGA Silent p.V723V 0.12 TCGA-97-A4M7-01 4 156135553 156135553 C T NPY2R Silent p.Y154Y 0.24 TCGA-97-A4M7-01 4 16597468 16597468 A T LDB2 Missense_Mutation p.F89Y 0.19 deleterious(0) probably_damaging(0.996) TCGA-97-A4M7-01 4 174449996 174449996 C A HAND2 Missense_Mutation p.A149S 0.22 tolerated(0.21) benign(0.102) TCGA-97-A4M7-01 4 189068534 189068534 G T TRIML1 3'UTR 0.25 TCGA-97-A4M7-01 4 30725633 30725633 G T PCDH7 Missense_Mutation p.Q863H 0.09 tolerated(0.13) possibly_damaging(0.77) TCGA-97-A4M7-01 4 57181843 57181843 G T KIAA1211 Missense_Mutation p.W725C 0.11 deleterious(0) possibly_damaging(0.878) TCGA-97-A4M7-01 4 5862847 5862847 G T CRMP1 Missense_Mutation p.N187K 0.15 deleterious(0) possibly_damaging(0.886) TCGA-97-A4M7-01 4 69343256 69343256 G A TMPRSS11E Missense_Mutation p.V293I 0.14 tolerated(0.14) possibly_damaging(0.529) TCGA-97-A4M7-01 4 8288498 8288498 G T HTRA3 Missense_Mutation p.K232N 0.19 deleterious(0.01) benign(0.061) TCGA-97-A4M7-01 4 870895 870895 C G GAK Missense_Mutation p.G653R 0.17 deleterious(0) probably_damaging(0.989) TCGA-97-A4M7-01 4 88401604 88401604 C T SPARCL1 Silent p.R579R 0.08 TCGA-97-A4M7-01 4 9785111 9785111 G T DRD5 3'UTR 0.32 TCGA-97-A4M7-01 5 1085385 1085385 G T SLC12A7 Silent p.A293A 0.23 TCGA-97-A4M7-01 5 115469782 115469782 G T COMMD10 Missense_Mutation p.W139C 0.17 deleterious(0) probably_damaging(1) TCGA-97-A4M7-01 5 118970247 118970247 A T FAM170A Silent p.T268T 0.24 TCGA-97-A4M7-01 5 121761073 121761073 C A SNCAIP Missense_Mutation p.D343E 0.10 tolerated(1) probably_damaging(0.997) TCGA-97-A4M7-01 5 135587338 135587338 G T TRPC7 Nonsense_Mutation p.Y526* 0.17 TCGA-97-A4M7-01 5 139889704 139889704 G T ANKHD1 Missense_Mutation p.G1348C 0.20 probably_damaging(0.991) TCGA-97-A4M7-01 5 140166919 140166919 A G PCDHA1 Silent p.P348P 0.32 TCGA-97-A4M7-01 5 140256892 140256892 A T PCDHA12 Missense_Mutation p.Q612L 0.13 tolerated_low_confidence(0.26) benign(0.064) TCGA-97-A4M7-01 5 140516658 140516658 G T PCDHB5 Missense_Mutation p.V548L 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.739) TCGA-97-A4M7-01 5 140557755 140557755 C A PCDHB8 Missense_Mutation p.T47N 0.22 deleterious_low_confidence(0) possibly_damaging(0.539) TCGA-97-A4M7-01 5 140557756 140557756 C A PCDHB8 Silent p.T47T 0.21 TCGA-97-A4M7-01 5 140589401 140589401 G T PCDHB12 Missense_Mutation p.D308Y 0.25 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-97-A4M7-01 5 140736238 140736238 C T PCDHGA4 Silent p.L491L 0.08 TCGA-97-A4M7-01 5 145246248 145246248 T C GRXCR2 Missense_Mutation p.N127S 0.21 tolerated(0.66) benign(0.165) TCGA-97-A4M7-01 5 146030285 146030285 C A PPP2R2B Silent p.V153V 0.30 TCGA-97-A4M7-01 5 156381735 156381735 C A TIMD4 Missense_Mutation p.V31F 0.10 tolerated(1) benign(0.001) TCGA-97-A4M7-01 5 16067786 16067786 G T MARCH11 Silent p.R335R 0.30 TCGA-97-A4M7-01 5 172659698 172659698 C A NKX2-5 Silent p.P283P 0.12 TCGA-97-A4M7-01 5 176524383 176524383 G T FGFR4 Silent p.L748L 0.28 TCGA-97-A4M7-01 5 176895872 176895872 C A DBN1 Missense_Mutation p.D41Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-97-A4M7-01 5 22142671 22142671 G T CDH12 Intron 0.13 TCGA-97-A4M7-01 5 23527006 23527006 A C PRDM9 Silent p.T603T 0.13 TCGA-97-A4M7-01 5 31323152 31323152 C A CDH6 Missense_Mutation p.P704T 0.18 tolerated(0.08) benign(0.229) TCGA-97-A4M7-01 5 52356877 52356877 G T ITGA2 Splice_Site p.X486_splice 0.18 TCGA-97-A4M7-01 5 78340146 78340146 G A DMGDH Silent p.V325V 0.18 TCGA-97-A4M7-01 5 7900234 7900234 C T MTRR 3'UTR 0.32 TCGA-97-A4M7-01 6 151358099 151358099 A G MTHFD1L Splice_Site p.X899_splice 0.29 TCGA-97-A4M7-01 6 158923144 158923144 G T TULP4 Missense_Mutation p.A817S 0.18 tolerated_low_confidence(0.13) benign(0.02) TCGA-97-A4M7-01 6 17781014 17781014 C A KIF13A Missense_Mutation p.A1265S 0.25 tolerated(0.72) benign(0.019) TCGA-97-A4M7-01 6 26108009 26108009 C A HIST1H1T Missense_Mutation p.A105S 0.23 deleterious(0) probably_damaging(0.996) TCGA-97-A4M7-01 6 26508767 26508767 C A BTN1A1 Missense_Mutation p.L316I 0.14 deleterious(0) probably_damaging(1) TCGA-97-A4M7-01 6 35258421 35258421 C T ZNF76 Missense_Mutation p.H185Y 0.15 deleterious(0) probably_damaging(0.997) TCGA-97-A4M7-01 6 45459726 45459726 G T RUNX2 Missense_Mutation p.R245L 0.24 deleterious(0) probably_damaging(0.994) TCGA-97-A4M7-01 6 47549737 47549737 A T CD2AP Splice_Site p.X349_splice 0.13 TCGA-97-A4M7-01 6 49667526 49667526 G T CRISP2 Missense_Mutation p.R88S 0.13 deleterious(0.02) probably_damaging(1) TCGA-97-A4M7-01 6 52141252 52141252 C A MCM3 Silent p.G441G 0.17 TCGA-97-A4M7-01 6 52141253 52141253 C A MCM3 Missense_Mutation p.G441V 0.17 deleterious(0) probably_damaging(0.993) TCGA-97-A4M7-01 6 71185211 71185211 G T FAM135A Missense_Mutation p.V86F 0.30 deleterious(0.03) probably_damaging(0.938) TCGA-97-A4M7-01 6 87967283 87967283 G T ZNF292 Silent p.G1312G 0.44 TCGA-97-A4M7-01 6 90718437 90718437 C T BACH2 Missense_Mutation p.V43M 0.06 deleterious(0.03) probably_damaging(0.923) TCGA-97-A4M7-01 7 129938648 129938648 T G CPA4 Missense_Mutation p.V44G 0.12 tolerated(0.18) benign(0.029) TCGA-97-A4M7-01 7 129938649 129938649 G T CPA4 Silent p.V44V 0.10 TCGA-97-A4M7-01 7 137790167 137790167 A C AKR1D1 Missense_Mutation p.S191R 0.21 deleterious(0) probably_damaging(0.92) TCGA-97-A4M7-01 7 140453149 140453149 C T BRAF Missense_Mutation p.G596S 0.23 deleterious(0) probably_damaging(0.975) TCGA-97-A4M7-01 7 142144045 142144045 G T TRBV6-7 Missense_Mutation p.L14M 0.10 deleterious(0) probably_damaging(0.991) TCGA-97-A4M7-01 7 14722178 14722178 T G DGKB Silent p.T345T 0.16 TCGA-97-A4M7-01 7 151877859 151877859 T A KMT2C Silent p.S2362S 0.22 TCGA-97-A4M7-01 7 154379452 154379452 C A DPP6 Intron 0.25 TCGA-97-A4M7-01 7 20180570 20180570 T C MACC1 Nonstop_Mutation p.*853Wext*7 0.20 TCGA-97-A4M7-01 7 20785024 20785024 C G ABCB5 Missense_Mutation p.A1131G 0.06 tolerated(0.13) probably_damaging(0.982) TCGA-97-A4M7-01 7 23571582 23571582 T A TRA2A 5'UTR 0.31 TCGA-97-A4M7-01 7 26709796 26709796 C A SKAP2 Missense_Mutation p.G335C 0.38 deleterious(0) probably_damaging(1) TCGA-97-A4M7-01 7 27238832 27238832 T G HOXA13 Missense_Mutation p.M289L 0.17 tolerated(0.29) benign(0.018) TCGA-97-A4M7-01 7 42959587 42959587 C A PSMA2 Intron 0.33 TCGA-97-A4M7-01 7 43581470 43581470 C A HECW1 Missense_Mutation p.P1374H 0.11 deleterious(0.02) probably_damaging(0.964) TCGA-97-A4M7-01 7 44146399 44146399 C - AEBP1 Frame_Shift_Del p.I172Ffs*120 0.25 TCGA-97-A4M7-01 7 55259515 55259515 T G EGFR Missense_Mutation p.L858R 0.13 deleterious(0) probably_damaging(1) TCGA-97-A4M7-01 7 5643183 5643183 C T FSCN1 Missense_Mutation p.A349V 0.10 deleterious(0) possibly_damaging(0.908) TCGA-97-A4M7-01 7 57188356 57188356 G T ZNF479 Missense_Mutation p.L256I 0.30 tolerated(0.05) probably_damaging(0.995) TCGA-97-A4M7-01 7 6620241 6620241 G A ZDHHC4 Missense_Mutation p.G17S 0.06 tolerated(0.79) benign(0.003) TCGA-97-A4M7-01 7 71252731 71252731 T A CALN1 3'UTR 0.19 TCGA-97-A4M7-01 7 77549683 77549683 C T PHTF2 Silent p.S254S 0.19 TCGA-97-A4M7-01 7 95499298 95499298 C T DYNC1I1 Missense_Mutation p.H177Y 0.20 tolerated(0.58) benign(0.238) TCGA-97-A4M7-01 7 97484706 97484706 C T ASNS Missense_Mutation p.G366R 0.10 deleterious(0.04) possibly_damaging(0.818) TCGA-97-A4M7-01 8 104054571 104054571 G T ATP6V1C1 Missense_Mutation p.G46C 0.11 deleterious(0) possibly_damaging(0.88) TCGA-97-A4M7-01 8 104898089 104898089 C A RIMS2 Missense_Mutation p.P421Q 0.14 tolerated_low_confidence(0.21) benign(0.003) TCGA-97-A4M7-01 8 113326717 113326717 G A CSMD3 Missense_Mutation p.T2497I 0.15 deleterious(0) possibly_damaging(0.816) TCGA-97-A4M7-01 8 2021562 2021562 G T MYOM2 Missense_Mutation p.A368S 0.23 deleterious(0.02) probably_damaging(0.931) TCGA-97-A4M7-01 8 39027459 39027459 G A ADAM32 Silent p.L286L 0.11 TCGA-97-A4M7-01 8 52323841 52323841 C A PXDNL Missense_Mutation p.K677N 0.18 tolerated(0.38) benign(0.009) TCGA-97-A4M7-01 8 53554950 53554950 C A RB1CC1 Missense_Mutation p.R1433I 0.09 tolerated(0.12) benign(0.002) TCGA-97-A4M7-01 8 68939490 68939490 G T PREX2 Missense_Mutation p.D159Y 0.08 deleterious(0) possibly_damaging(0.876) TCGA-97-A4M7-01 8 88885612 88885612 C A DCAF4L2 Silent p.A196A 0.13 TCGA-97-A4M7-01 9 107367863 107367865 CCT AA OR13C2 Frame_Shift_Del p.K15Ifs*19 0.17 TCGA-97-A4M7-01 9 113170013 113170013 C T SVEP1 Missense_Mutation p.D2623N 0.08 benign(0.187) TCGA-97-A4M7-01 9 115336424 115336424 C T KIAA1958 Missense_Mutation p.H22Y 0.27 deleterious(0) possibly_damaging(0.727) TCGA-97-A4M7-01 9 119976865 119976865 G C ASTN2 Missense_Mutation p.Q263E 0.22 deleterious_low_confidence(0.02) unknown(0) TCGA-97-A4M7-01 9 125148880 125148880 C A PTGS1 Missense_Mutation p.L389I 0.19 deleterious(0) probably_damaging(0.967) TCGA-97-A4M7-01 9 135984156 135984156 C T RALGDS Missense_Mutation p.V228M 0.27 deleterious(0.01) probably_damaging(0.99) TCGA-97-A4M7-01 9 139265296 139265296 C A CARD9 Silent p.L208L 0.18 TCGA-97-A4M7-01 9 21187346 21187346 G T IFNA4 Missense_Mutation p.P62H 0.27 deleterious(0) probably_damaging(0.934) TCGA-97-A4M7-01 9 72006746 72006746 A T FAM189A2 3'UTR 0.33 TCGA-97-A4M7-01 9 90321080 90321080 G - DAPK1 Frame_Shift_Del p.V1032Cfs*64 0.16 TCGA-97-A4M7-01 X 100494017 100494017 G C DRP2 Silent p.V162V 0.32 TCGA-97-A4M7-01 X 106840727 106840727 C T FRMPD3 Nonsense_Mutation p.Q573* 0.08 TCGA-97-A4M7-01 X 110644530 110644530 G A DCX Silent p.N212N 0.16 TCGA-97-A4M7-01 X 117043360 117043360 C A KLHL13 Missense_Mutation p.V427F 0.46 deleterious(0.01) probably_damaging(0.93) TCGA-97-A4M7-01 X 12817467 12817467 G T PRPS2 Silent p.V88V 0.33 TCGA-97-A4M7-01 X 131202253 131202253 G C MST4 Missense_Mutation p.G114A 0.49 deleterious(0.04) possibly_damaging(0.614) TCGA-97-A4M7-01 X 13338079 13338079 A C ATXN3L 5'UTR 0.15 TCGA-97-A4M7-01 X 134978488 134978488 G - SAGE1 Frame_Shift_Del 0.24 TCGA-97-A4M7-01 X 137790977 137790977 T G FGF13 Intron 0.15 TCGA-97-A4M7-01 X 138642936 138642936 G A F9 Missense_Mutation p.G254S 0.27 deleterious(0) probably_damaging(0.975) TCGA-97-A4M7-01 X 1409278 1409278 C A CSF2RA Silent p.T174T 0.21 TCGA-97-A4M7-01 X 144905395 144905395 G T SLITRK2 Silent p.R484R 0.41 TCGA-97-A4M7-01 X 15301712 15301712 C A ASB11 Missense_Mutation p.R296L 0.42 deleterious(0.01) possibly_damaging(0.813) TCGA-97-A4M7-01 X 155235049 155235049 C - IL9R Frame_Shift_Del p.T230Hfs*7 0.19 TCGA-97-A4M7-01 X 47041007 47041007 G T RBM10 Nonsense_Mutation p.E513* 0.44 TCGA-97-A4M7-01 X 48566049 48566049 C T SUV39H1 3'UTR 0.35 TCGA-97-A4M7-01 X 54956056 54956056 G T TRO Missense_Mutation p.A967S 0.35 tolerated(0.08) benign(0.224) TCGA-97-A4M7-01 X 71427655 71427655 A G ERCC6L Missense_Mutation p.I321T 0.45 deleterious(0) probably_damaging(0.966) TCGA-99-7458-01 10 104638606 104638606 G T AS3MT Missense_Mutation p.G248V 0.20 deleterious(0) probably_damaging(0.967) TCGA-99-7458-01 10 115374047 115374047 G T NRAP Nonsense_Mutation p.Y1065* 0.06 TCGA-99-7458-01 10 117026348 117026348 A T ATRNL1 Missense_Mutation p.K616M 0.21 deleterious(0.02) benign(0.235) TCGA-99-7458-01 10 118030531 118030531 T C GFRA1 Missense_Mutation p.Y46C 0.09 deleterious(0) probably_damaging(0.998) TCGA-99-7458-01 10 123970146 123970146 G T TACC2 Missense_Mutation p.R2069L 0.18 probably_damaging(1) TCGA-99-7458-01 10 25701316 25701316 C T GPR158 Nonsense_Mutation p.R417* 0.03 TCGA-99-7458-01 10 26559665 26559665 A G GAD2 Missense_Mutation p.K358E 0.16 tolerated(0.28) benign(0.008) TCGA-99-7458-01 10 44873881 44873881 T C CXCL12 Intron 0.21 TCGA-99-7458-01 10 56128918 56128918 T A PCDH15 Missense_Mutation p.T146S 0.20 tolerated(0.54) benign(0.007) TCGA-99-7458-01 10 5808594 5808594 G A GDI2 Silent p.Y333Y 0.12 TCGA-99-7458-01 10 6527227 6527227 C A PRKCQ Missense_Mutation p.R302L 0.17 tolerated(0.13) benign(0.092) TCGA-99-7458-01 10 69700789 69700789 A T HERC4 Missense_Mutation p.V812E 0.21 deleterious(0) possibly_damaging(0.892) TCGA-99-7458-01 10 81850697 81850697 A C TMEM254 3'UTR 0.13 TCGA-99-7458-01 10 87484184 87484184 C A GRID1 Missense_Mutation p.A595S 0.16 tolerated(1) benign(0.003) TCGA-99-7458-01 10 88415988 88415988 G T OPN4 Missense_Mutation p.G74V 0.10 deleterious(0) probably_damaging(1) TCGA-99-7458-01 10 95276916 95276916 G T CEP55 Nonsense_Mutation p.E302* 0.23 TCGA-99-7458-01 11 101868485 101868485 A G KIAA1377 3'UTR 0.17 TCGA-99-7458-01 11 109294692 109294692 T A C11orf87 Silent p.G111G 0.18 TCGA-99-7458-01 11 1104128 1104128 C T MUC2 Silent p.S2773S 0.14 TCGA-99-7458-01 11 113281557 113281557 G T DRD2 Nonsense_Mutation p.Y408* 0.13 TCGA-99-7458-01 11 114392778 114392778 A T NXPE1 Missense_Mutation p.M377K 0.27 deleterious(0.04) possibly_damaging(0.616) TCGA-99-7458-01 11 118037787 118037787 C - SCN2B Frame_Shift_Del p.D155Tfs*6 0.16 TCGA-99-7458-01 11 123676321 123676321 G T OR6M1 Missense_Mutation p.S246Y 0.22 deleterious(0) possibly_damaging(0.492) TCGA-99-7458-01 11 130275652 130275652 G T ADAMTS8 Missense_Mutation p.T824N 0.20 deleterious(0.03) benign(0.197) TCGA-99-7458-01 11 130278466 130278466 G T ADAMTS8 Silent p.A664A 0.13 TCGA-99-7458-01 11 133799663 133799663 C A IGSF9B Missense_Mutation p.A512S 0.22 deleterious(0.04) possibly_damaging(0.716) TCGA-99-7458-01 11 17531216 17531216 G A USH1C Missense_Mutation p.P567L 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.797) TCGA-99-7458-01 11 17793517 17793517 G A KCNC1 Silent p.E292E 0.12 TCGA-99-7458-01 11 22707280 22707280 C T GAS2 Missense_Mutation p.A71V 0.18 tolerated(0.3) probably_damaging(0.919) TCGA-99-7458-01 11 27147268 27147268 G T BBOX1 Missense_Mutation p.V302L 0.11 tolerated(0.88) benign(0.002) TCGA-99-7458-01 11 32953644 32953644 G T QSER1 Missense_Mutation p.L151F 0.16 deleterious(0) probably_damaging(0.999) TCGA-99-7458-01 11 33108609 33108609 C T CSTF3 Missense_Mutation p.E574K 0.13 tolerated(0.38) benign(0.01) TCGA-99-7458-01 11 4703067 4703067 C A OR51E2 Missense_Mutation p.G292V 0.16 deleterious(0) possibly_damaging(0.508) TCGA-99-7458-01 11 51515712 51515712 G T OR4C46 Missense_Mutation p.G144V 0.13 tolerated_low_confidence(0.16) benign(0.12) TCGA-99-7458-01 11 55032685 55032685 G A TRIM48 Missense_Mutation p.M118I 0.09 tolerated(1) benign(0.001) TCGA-99-7458-01 11 55541127 55541127 G A OR5D13 Missense_Mutation p.D72N 0.19 deleterious(0) probably_damaging(1) TCGA-99-7458-01 11 55653015 55653015 C A TRIM51 Silent p.P37P 0.14 TCGA-99-7458-01 11 55735603 55735603 G C OR10AG1 Missense_Mutation p.R113G 0.21 deleterious(0) probably_damaging(0.976) TCGA-99-7458-01 11 55735739 55735739 G T OR10AG1 Silent p.I67I 0.17 TCGA-99-7458-01 11 55872682 55872682 A T OR8H2 Missense_Mutation p.Q55L 0.17 deleterious(0) benign(0.02) TCGA-99-7458-01 11 55944520 55944520 G A OR5J2 Missense_Mutation p.E143K 0.19 tolerated(0.82) benign(0.001) TCGA-99-7458-01 11 5776795 5776795 C - OR52N4 Frame_Shift_Del p.H276Tfs*4 0.09 TCGA-99-7458-01 11 57947124 57947124 G T OR9Q1 Missense_Mutation p.D70Y 0.17 deleterious(0) probably_damaging(1) TCGA-99-7458-01 11 59225093 59225093 C T OR4D6 Silent p.V220V 0.15 TCGA-99-7458-01 11 59271238 59271238 C T OR4D11 Missense_Mutation p.R64C 0.19 tolerated(0.29) benign(0.003) TCGA-99-7458-01 11 59573868 59573868 G T MRPL16 Silent p.T236T 0.20 TCGA-99-7458-01 11 59814444 59814444 T A OOSP2 Silent p.S125S 0.20 TCGA-99-7458-01 11 60310044 60310044 C T MS4A13 Missense_Mutation p.P152L 0.25 deleterious_low_confidence(0) benign(0) TCGA-99-7458-01 11 61295600 61295600 C A SYT7 Missense_Mutation p.G212C 0.26 deleterious(0) probably_damaging(0.999) TCGA-99-7458-01 11 62557391 62557391 G C TMEM179B Missense_Mutation p.V178L 0.10 tolerated(1) benign(0.001) TCGA-99-7458-01 11 64393933 64393933 A G NRXN2 Splice_Site p.X1283_splice 0.28 TCGA-99-7458-01 11 64527451 64527451 C A PYGM 5'UTR 0.17 TCGA-99-7458-01 11 64564003 64564003 C A MAP4K2 Missense_Mutation p.W532L 0.14 deleterious(0) probably_damaging(0.98) TCGA-99-7458-01 11 65043444 65043444 C T POLA2 Missense_Mutation p.L146F 0.12 tolerated(0.8) benign(0.06) TCGA-99-7458-01 11 6913354 6913354 G C OR2D2 Missense_Mutation p.I126M 0.17 deleterious(0.01) probably_damaging(0.91) TCGA-99-7458-01 11 71276873 71276874 - A KRTAP5-10 Frame_Shift_Ins p.G82Rfs*65 0.12 TCGA-99-7458-01 11 7324419 7324419 C T SYT9 Missense_Mutation p.L99F 0.22 tolerated(0.76) benign(0.004) TCGA-99-7458-01 11 7982838 7982838 G T NLRP10 Silent p.R107R 0.20 TCGA-99-7458-01 11 82643414 82643414 G C C11orf82 Missense_Mutation p.R345P 0.25 deleterious(0.03) benign(0.271) TCGA-99-7458-01 11 85375677 85375677 C T CREBZF Silent p.E81E 0.17 TCGA-99-7458-01 11 89166020 89166020 A G NOX4 Silent p.P160P 0.20 TCGA-99-7458-01 11 89413826 89413826 A T FOLH1B RNA 0.20 TCGA-99-7458-01 12 112669411 112669411 T C HECTD4 Missense_Mutation p.I1890V 0.22 benign(0) TCGA-99-7458-01 12 11461410 11461410 T - PRB4 Frame_Shift_Del p.G170Efs*87 0.17 TCGA-99-7458-01 12 126138827 126138827 G - TMEM132B Frame_Shift_Del p.G937Afs*35 0.09 TCGA-99-7458-01 12 130648510 130648510 G A FZD10 Silent p.K341K 0.17 TCGA-99-7458-01 12 13769510 13769510 C T GRIN2B Missense_Mutation p.D403N 0.15 deleterious(0.02) possibly_damaging(0.494) TCGA-99-7458-01 12 26753039 26753039 C G ITPR2 Missense_Mutation p.D1228H 0.13 deleterious(0.03) probably_damaging(1) TCGA-99-7458-01 12 42717844 42717844 G - ZCRB1 Frame_Shift_Del p.L21* 0.22 TCGA-99-7458-01 12 50794740 50794740 G T LARP4 5'UTR 0.20 TCGA-99-7458-01 12 5154561 5154561 C T KCNA5 Silent p.H416H 0.12 TCGA-99-7458-01 12 55356595 55356595 A G TESPA1 Missense_Mutation p.C363R 0.25 tolerated_low_confidence(0.14) benign(0.003) TCGA-99-7458-01 12 6181546 6181546 C A VWF Nonsense_Mutation p.G354* 0.16 TCGA-99-7458-01 12 77421680 77421680 C A E2F7 Missense_Mutation p.C708F 0.26 deleterious(0.01) benign(0.003) TCGA-99-7458-01 12 8628803 8628803 G T CLEC6A Missense_Mutation p.W151L 0.15 deleterious(0.04) benign(0.072) TCGA-99-7458-01 12 8628804 8628804 G T CLEC6A Missense_Mutation p.W151C 0.15 deleterious(0) probably_damaging(0.967) TCGA-99-7458-01 12 94694764 94694764 C T PLXNC1 Silent p.D1439D 0.22 TCGA-99-7458-01 12 97137624 97137624 C T C12orf55 Missense_Mutation p.S2498F 0.10 tolerated(0.39) benign(0.002) TCGA-99-7458-01 13 101726022 101726022 T C NALCN Missense_Mutation p.N1371D 0.08 deleterious(0.01) probably_damaging(0.996) TCGA-99-7458-01 13 103710636 103710636 G C SLC10A2 Missense_Mutation p.I158M 0.13 deleterious(0.01) benign(0.319) TCGA-99-7458-01 13 109707814 109707814 C T MYO16 Missense_Mutation p.S1047L 0.22 tolerated(0.07) possibly_damaging(0.478) TCGA-99-7458-01 13 20656961 20656961 G T ZMYM2 Missense_Mutation p.R1203S 0.18 tolerated(0.56) benign(0.067) TCGA-99-7458-01 13 26975623 26975623 G C CDK8 Missense_Mutation p.Q377H 0.23 tolerated(0.07) benign(0.11) TCGA-99-7458-01 13 28542718 28542718 G T CDX2 Silent p.P142P 0.50 TCGA-99-7458-01 13 29608247 29608247 A T MTUS2 Missense_Mutation p.S821C 0.17 tolerated(0.1) possibly_damaging(0.518) TCGA-99-7458-01 13 53624469 53624469 A T OLFM4 Missense_Mutation p.N366Y 0.17 tolerated(0.12) benign(0.053) TCGA-99-7458-01 13 58207657 58207657 T A PCDH17 Missense_Mutation p.L326Q 0.13 tolerated(0.15) benign(0.367) TCGA-99-7458-01 14 102452915 102452915 G T DYNC1H1 Missense_Mutation p.V785F 0.14 probably_damaging(0.961) TCGA-99-7458-01 14 105413664 105413664 C G AHNAK2 Missense_Mutation p.Q2708H 0.13 benign(0.341) TCGA-99-7458-01 14 105417186 105417186 C T AHNAK2 Silent p.G1534G 0.13 TCGA-99-7458-01 14 105417188 105417188 C T AHNAK2 Missense_Mutation p.G1534R 0.11 probably_damaging(0.994) TCGA-99-7458-01 14 107170008 107170008 C A IGHV1-69 Missense_Mutation p.D92Y 0.18 deleterious(0.01) possibly_damaging(0.731) TCGA-99-7458-01 14 20216098 20216098 G T OR4Q3 Missense_Mutation p.G171V 0.08 deleterious(0.01) benign(0.381) TCGA-99-7458-01 14 22133904 22133904 G T OR4E2 Missense_Mutation p.S203I 0.26 deleterious(0) probably_damaging(1) TCGA-99-7458-01 14 33291625 33291625 A G AKAP6 Missense_Mutation p.M1536V 0.05 tolerated_low_confidence(1) benign(0.004) TCGA-99-7458-01 14 44976080 44976080 G C FSCB Missense_Mutation p.S37R 0.21 deleterious(0) possibly_damaging(0.686) TCGA-99-7458-01 14 50734574 50734574 C A L2HGDH Missense_Mutation p.G321C 0.25 deleterious(0) probably_damaging(1) TCGA-99-7458-01 14 51239122 51239122 C A NIN Missense_Mutation p.R293L 0.18 deleterious(0.01) probably_damaging(0.935) TCGA-99-7458-01 14 52481130 52481130 G T NID2 Missense_Mutation p.P1099T 0.27 tolerated(0.08) possibly_damaging(0.831) TCGA-99-7458-01 14 57268600 57268600 C A OTX2 Missense_Mutation p.Q249H 0.29 tolerated(0.08) possibly_damaging(0.615) TCGA-99-7458-01 14 63417043 63417043 C A KCNH5 Missense_Mutation p.A393S 0.18 tolerated(0.21) benign(0.328) TCGA-99-7458-01 14 70477560 70477561 - C SMOC1 Frame_Shift_Ins p.G254Wfs*5 0.19 TCGA-99-7458-01 14 91749723 91749723 G A CCDC88C Missense_Mutation p.T1527I 0.14 tolerated(0.39) benign(0.016) TCGA-99-7458-01 14 95899631 95899631 T C SYNE3 Missense_Mutation p.Y885C 0.18 deleterious(0) probably_damaging(0.999) TCGA-99-7458-01 15 21071276 21071276 C A POTEB2 Missense_Mutation p.W112L 0.10 tolerated(0.66) probably_damaging(0.954) TCGA-99-7458-01 15 22368804 22368804 A T OR4M2 Missense_Mutation p.T77S 0.08 deleterious(0) possibly_damaging(0.897) TCGA-99-7458-01 15 22368830 22368830 C G OR4M2 Missense_Mutation p.F85L 0.03 tolerated(0.52) probably_damaging(0.993) TCGA-99-7458-01 15 25436448 25436448 G C SNORD115-11 3'Flank 0.07 TCGA-99-7458-01 15 34077909 34077909 C A RYR3 Silent p.P3105P 0.06 TCGA-99-7458-01 15 38234566 38234566 C A TMCO5A Intron 0.12 TCGA-99-7458-01 15 40564615 40564615 G A PAK6 Missense_Mutation p.G350E 0.18 tolerated(0.06) probably_damaging(0.985) TCGA-99-7458-01 15 41687110 41687110 T C NDUFAF1 Missense_Mutation p.M236V 0.17 tolerated(0.37) benign(0.038) TCGA-99-7458-01 15 45365705 45365705 G T SORD Missense_Mutation p.D351Y 0.16 deleterious(0) probably_damaging(0.97) TCGA-99-7458-01 15 48052056 48052056 G C SEMA6D Missense_Mutation p.V21L 0.18 tolerated(0.3) benign(0.001) TCGA-99-7458-01 15 49800432 49800432 C G FAM227B Missense_Mutation p.D330H 0.10 tolerated(0.11) benign(0.073) TCGA-99-7458-01 15 72968489 72968489 C A HIGD2B Missense_Mutation p.R76L 0.26 deleterious(0) benign(0.002) TCGA-99-7458-01 15 74425301 74425301 G T ISLR2 Missense_Mutation p.G69V 0.22 deleterious(0.01) probably_damaging(1) TCGA-99-7458-01 15 78401674 78401674 C T CIB2 Silent p.E83E 0.05 TCGA-99-7458-01 15 85345586 85345586 C G ZNF592 Missense_Mutation p.Q1256E 0.07 tolerated_low_confidence(0.18) benign(0.049) TCGA-99-7458-01 15 89401442 89401442 G A ACAN Missense_Mutation p.G1876R 0.19 deleterious(0.02) probably_damaging(0.992) TCGA-99-7458-01 16 1308196 1308196 G T TPSD1 Silent p.A219A 0.29 TCGA-99-7458-01 16 1308350 1308350 C A TPSD1 Silent p.P234P 0.19 TCGA-99-7458-01 16 20370659 20370659 T C PDILT Silent p.K579K 0.20 TCGA-99-7458-01 16 31121042 31121042 C A BCKDK Missense_Mutation p.R105S 0.11 deleterious(0) probably_damaging(0.987) TCGA-99-7458-01 16 33647406 33647406 T C RP11-812E19.9 Missense_Mutation p.E65G 0.13 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-99-7458-01 16 33647407 33647407 C T RP11-812E19.9 Missense_Mutation p.E65K 0.14 deleterious_low_confidence(0) benign(0.348) TCGA-99-7458-01 16 48212511 48212511 C A ABCC11 Missense_Mutation p.M1115I 0.16 tolerated(1) benign(0.007) TCGA-99-7458-01 16 51175648 51175648 C T SALL1 Missense_Mutation p.G162D 0.31 tolerated(0.63) benign(0) TCGA-99-7458-01 16 57803531 57803533 CTC TA KIFC3 Frame_Shift_Del p.E398* 0.20 TCGA-99-7458-01 16 67679982 67679982 A T RLTPR Missense_Mutation p.Q83L 0.18 tolerated(0.14) benign(0.005) TCGA-99-7458-01 16 70590926 70590926 G T SF3B3 Silent p.G668G 0.21 TCGA-99-7458-01 16 71604215 71604215 C A TAT Missense_Mutation p.R333L 0.15 tolerated(0.23) benign(0.082) TCGA-99-7458-01 16 71663520 71663520 T A MARVELD3 Intron 0.30 TCGA-99-7458-01 16 75327845 75327845 T G CFDP1 3'UTR 0.19 TCGA-99-7458-01 17 10247257 10247257 G C MYH13 Missense_Mutation p.A585G 0.23 deleterious(0.01) benign(0.283) TCGA-99-7458-01 17 10295913 10295913 C A MYH8 Missense_Mutation p.E1838D 0.14 tolerated(0.21) benign(0.029) TCGA-99-7458-01 17 11554601 11554601 C - DNAH9 Frame_Shift_Del p.L772Sfs*8 0.27 TCGA-99-7458-01 17 20108350 20108350 G T SPECC1 Missense_Mutation p.D330Y 0.09 deleterious(0) probably_damaging(0.99) TCGA-99-7458-01 17 30665284 30665284 C A C17orf75 Missense_Mutation p.R145L 0.16 tolerated(0.71) benign(0) TCGA-99-7458-01 17 33520287 33520287 C A SLC35G3 3'UTR 0.16 TCGA-99-7458-01 17 39023359 39023359 A G KRT12 Missense_Mutation p.I27T 0.10 tolerated(0.47) unknown(0) TCGA-99-7458-01 17 40134324 40134324 C A DNAJC7 Nonsense_Mutation p.E394* 0.12 TCGA-99-7458-01 17 45668224 45668224 T G NPEPPS Missense_Mutation p.L413V 0.05 deleterious(0) probably_damaging(0.96) TCGA-99-7458-01 17 48195635 48195635 G T SAMD14 Silent p.R34R 0.08 TCGA-99-7458-01 17 48692748 48692748 G T CACNA1G Missense_Mutation p.D1596Y 0.13 deleterious(0.02) probably_damaging(0.971) TCGA-99-7458-01 17 56349109 56349109 C A MPO Missense_Mutation p.G646V 0.23 deleterious(0) probably_damaging(0.997) TCGA-99-7458-01 17 56694958 56694958 G A TEX14 Nonsense_Mutation p.R193* 0.07 TCGA-99-7458-01 17 66924151 66924151 G T ABCA8 Missense_Mutation p.D393E 0.17 tolerated(0.44) benign(0.12) TCGA-99-7458-01 17 67197675 67197675 C A ABCA10 Missense_Mutation p.V381L 0.16 deleterious(0.04) benign(0.178) TCGA-99-7458-01 17 72345400 72345400 C A KIF19 Silent p.I375I 0.15 TCGA-99-7458-01 17 7578290 7578290 C T TP53 Splice_Site p.X187_splice 0.20 TCGA-99-7458-01 17 78082517 78082517 G T GAA Missense_Mutation p.D406Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-99-7458-01 18 10696216 10696216 A C PIEZO2 Missense_Mutation p.M2236R 0.15 deleterious(0) probably_damaging(0.926) TCGA-99-7458-01 18 13731900 13731900 A T RNMT Missense_Mutation p.K128N 0.14 tolerated(0.07) benign(0.041) TCGA-99-7458-01 18 19780813 19780813 G T GATA6 3'UTR 0.24 TCGA-99-7458-01 18 19995559 19995559 A - CTAGE1 Frame_Shift_Del p.F739Sfs*17 0.22 TCGA-99-7458-01 18 20832975 20832975 G A CABLES1 Missense_Mutation p.E500K 0.14 deleterious(0.03) probably_damaging(0.938) TCGA-99-7458-01 18 21110037 21110037 C G C18orf8 Missense_Mutation p.L514V 0.16 tolerated(0.29) benign(0.021) TCGA-99-7458-01 18 2762143 2762143 T C SMCHD1 Missense_Mutation p.V1492A 0.23 tolerated(0.53) benign(0.046) TCGA-99-7458-01 18 29056010 29056010 T C DSG3 Silent p.G929G 0.17 TCGA-99-7458-01 18 29867127 29867127 C A GAREM Missense_Mutation p.C478F 0.20 tolerated(0.71) benign(0.147) TCGA-99-7458-01 18 31319709 31319709 C G ASXL3 Missense_Mutation p.P781A 0.18 benign(0.159) TCGA-99-7458-01 18 31538265 31538265 C G NOL4 Missense_Mutation p.D392H 0.16 deleterious(0.02) possibly_damaging(0.678) TCGA-99-7458-01 18 43418724 43418724 G A SIGLEC15 Missense_Mutation p.A180T 0.19 tolerated(0.58) benign(0.014) TCGA-99-7458-01 18 50450202 50450202 C A DCC Silent p.R275R 0.19 TCGA-99-7458-01 18 55024500 55024500 A T ST8SIA3 Missense_Mutation p.N220I 0.17 probably_damaging(0.972) TCGA-99-7458-01 18 64172450 64172450 G T CDH19 Missense_Mutation p.Q640K 0.10 tolerated(0.4) benign(0.001) TCGA-99-7458-01 18 67812964 67812964 C A RTTN Missense_Mutation p.A789S 0.09 tolerated(0.27) benign(0.209) TCGA-99-7458-01 18 67812965 67812965 C A RTTN Silent p.G788G 0.09 TCGA-99-7458-01 18 7231664 7231664 G T LRRC30 Silent p.A176A 0.17 TCGA-99-7458-01 18 72913562 72913562 C A ZADH2 Missense_Mutation p.A315S 0.12 tolerated(0.23) benign(0.069) TCGA-99-7458-01 18 77895005 77895006 - T ADNP2 Frame_Shift_Ins p.V571Cfs*147 0.17 TCGA-99-7458-01 18 7888243 7888243 G A PTPRM Silent p.G112G 0.19 TCGA-99-7458-01 19 12501876 12501876 C A ZNF799 Nonsense_Mutation p.E446* 0.19 TCGA-99-7458-01 19 15990654 15990654 C A CYP4F2 Missense_Mutation p.R390L 0.16 deleterious(0) probably_damaging(0.999) TCGA-99-7458-01 19 17892527 17892527 C A FCHO1 Missense_Mutation p.S612Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-99-7458-01 19 17892528 17892528 C A FCHO1 Silent p.S612S 0.18 TCGA-99-7458-01 19 21607859 21607859 T C ZNF493 3'UTR 0.12 TCGA-99-7458-01 19 23329555 23329555 C A ZNF730 3'UTR 0.12 TCGA-99-7458-01 19 23544912 23544912 C A ZNF91 Missense_Mutation p.G290V 0.11 deleterious(0) probably_damaging(0.991) TCGA-99-7458-01 19 31040324 31040324 G T ZNF536 Silent p.S1266S 0.16 TCGA-99-7458-01 19 33077677 33077677 A G PDCD5 Intron 0.33 TCGA-99-7458-01 19 41086559 41086559 A G SHKBP1 Missense_Mutation p.Y217C 0.10 deleterious(0) probably_damaging(0.99) TCGA-99-7458-01 19 42821947 42821947 G C TMEM145 Missense_Mutation p.W329C 0.22 deleterious(0.01) probably_damaging(0.986) TCGA-99-7458-01 19 43922565 43922565 C A TEX101 3'UTR 0.22 TCGA-99-7458-01 19 43922567 43922567 T G TEX101 3'UTR 0.22 TCGA-99-7458-01 19 48517427 48517427 G T ELSPBP1 Splice_Site p.X24_splice 0.26 TCGA-99-7458-01 19 51742847 51742847 G T CD33 Missense_Mutation p.E333D 0.15 tolerated(0.59) benign(0.143) TCGA-99-7458-01 19 53015320 53015320 C T ZNF578 Silent p.S562S 0.14 TCGA-99-7458-01 19 54310871 54310871 C A NLRP12 Silent p.A707A 0.16 TCGA-99-7458-01 19 55019118 55019118 G A LAIR2 Missense_Mutation p.R28K 0.19 tolerated(0.59) benign(0.241) TCGA-99-7458-01 19 55148268 55148268 C A LILRB1 Missense_Mutation p.P633Q 0.23 deleterious(0.03) benign(0.033) TCGA-99-7458-01 19 55665404 55665404 G A TNNI3 Silent p.T181T 0.20 TCGA-99-7458-01 19 55665459 55665459 G T TNNI3 Missense_Mutation p.A163D 0.18 deleterious(0.01) benign(0.212) TCGA-99-7458-01 19 56369531 56369531 C G NLRP4 Missense_Mutation p.Q258E 0.14 tolerated(0.66) benign(0.058) TCGA-99-7458-01 19 57175196 57175196 G A ZNF835 Silent p.N457N 0.24 TCGA-99-7458-01 19 58421422 58421422 C A ZNF417 Missense_Mutation p.R75I 0.18 tolerated(0.18) possibly_damaging(0.595) TCGA-99-7458-01 19 58846460 58846460 C T ZSCAN22 Silent p.L98L 0.12 TCGA-99-7458-01 19 6380303 6380303 G C GTF2F1 Missense_Mutation p.L515V 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-99-7458-01 19 6897259 6897259 C A EMR1 Missense_Mutation p.S113Y 0.22 tolerated(0.07) possibly_damaging(0.578) TCGA-99-7458-01 1 103427822 103427822 C A COL11A1 Splice_Site p.X1009_splice 0.17 TCGA-99-7458-01 1 103440407 103440407 G T COL11A1 Missense_Mutation p.F929L 0.06 unknown(0) TCGA-99-7458-01 1 103544311 103544311 C A COL11A1 Missense_Mutation p.V131F 0.16 probably_damaging(0.993) TCGA-99-7458-01 1 104112639 104112639 G A AMY2B Intron 0.19 TCGA-99-7458-01 1 110883214 110883214 G T RBM15 Missense_Mutation p.R396L 0.19 deleterious(0) probably_damaging(0.97) TCGA-99-7458-01 1 147231030 147231030 C T GJA5 Missense_Mutation p.R106H 0.13 deleterious(0.04) benign(0.223) TCGA-99-7458-01 1 147380436 147380436 G - GJA8 Frame_Shift_Del p.T120Lfs*29 0.30 TCGA-99-7458-01 1 151006393 151006393 A T PRUNE Nonsense_Mutation p.K349* 0.29 TCGA-99-7458-01 1 152191370 152191370 C A HRNR Missense_Mutation p.G912V 0.11 unknown(0) TCGA-99-7458-01 1 152193475 152193475 A G HRNR Silent p.S210S 0.12 TCGA-99-7458-01 1 152749092 152749092 G T LCE1F Missense_Mutation p.R82L 0.09 tolerated_low_confidence(0.75) unknown(0) TCGA-99-7458-01 1 154437894 154437894 G T IL6R 3'UTR 0.15 TCGA-99-7458-01 1 157769856 157769856 A G FCRL1 Silent p.D341D 0.20 TCGA-99-7458-01 1 158389873 158389873 G T OR10K2 Missense_Mutation p.P262T 0.15 deleterious(0.01) probably_damaging(0.952) TCGA-99-7458-01 1 158449763 158449763 C A OR10R2 Missense_Mutation p.F32L 0.20 deleterious(0.02) benign(0.335) TCGA-99-7458-01 1 158627314 158627314 G T SPTA1 Missense_Mutation p.P920T 0.14 deleterious(0.01) probably_damaging(0.954) TCGA-99-7458-01 1 158645987 158645987 C A SPTA1 Missense_Mutation p.W352C 0.27 deleterious(0) probably_damaging(0.988) TCGA-99-7458-01 1 158645988 158645988 C A SPTA1 Missense_Mutation p.W352L 0.28 deleterious(0) probably_damaging(0.936) TCGA-99-7458-01 1 159023368 159023368 A T IFI16 Missense_Mutation p.T655S 0.15 deleterious(0.01) possibly_damaging(0.844) TCGA-99-7458-01 1 161683163 161683163 C T FCRLA Missense_Mutation p.A381V 0.10 tolerated(0.07) possibly_damaging(0.571) TCGA-99-7458-01 1 161722885 161722885 C G DUSP12 Missense_Mutation p.S232C 0.28 deleterious(0) probably_damaging(0.99) TCGA-99-7458-01 1 164815956 164815956 G A PBX1 3'UTR 0.33 TCGA-99-7458-01 1 165859550 165859550 C T UCK2 Missense_Mutation p.S70L 0.14 tolerated(0.11) benign(0.003) TCGA-99-7458-01 1 171504671 171504671 G A PRRC2C Missense_Mutation p.A658T 0.14 unknown(0) TCGA-99-7458-01 1 176153798 176153798 T C RFWD2 Silent p.A146A 0.15 TCGA-99-7458-01 1 186275895 186275895 G A PRG4 Silent p.K348K 0.28 TCGA-99-7458-01 1 18809454 18809454 G T KLHDC7A Missense_Mutation p.G660V 0.15 deleterious(0.05) benign(0.282) TCGA-99-7458-01 1 196927062 196927062 G T CFHR2 Nonsense_Mutation p.G158* 0.12 TCGA-99-7458-01 1 197065239 197065239 C A ASPM Missense_Mutation p.C2959F 0.28 tolerated(0.4) probably_damaging(0.953) TCGA-99-7458-01 1 197396975 197396975 G A CRB1 Silent p.E840E 0.29 TCGA-99-7458-01 1 200978394 200978394 C A KIF21B Missense_Mutation p.Q88H 0.33 deleterious(0) probably_damaging(0.991) TCGA-99-7458-01 1 202318255 202318255 G T PPP1R12B Missense_Mutation p.L92F 0.36 deleterious(0.03) probably_damaging(0.981) TCGA-99-7458-01 1 204009482 204009482 G T LINC00303 RNA 0.46 TCGA-99-7458-01 1 206666379 206666379 A G IKBKE Missense_Mutation p.H620R 0.20 tolerated(0.36) benign(0.342) TCGA-99-7458-01 1 215342686 215342686 T C KCNK2 Missense_Mutation p.V207A 0.27 deleterious(0.03) benign(0.156) TCGA-99-7458-01 1 216369929 216369929 G T USH2A Nonsense_Mutation p.S1406* 0.17 TCGA-99-7458-01 1 220792037 220792037 C G MARK1 Missense_Mutation p.D283E 0.08 deleterious(0) probably_damaging(0.999) TCGA-99-7458-01 1 223567834 223567834 G T C1orf65 Silent p.V339V 0.33 TCGA-99-7458-01 1 225609925 225609925 T A LBR Nonsense_Mutation p.R74* 0.19 TCGA-99-7458-01 1 226125399 226125399 C G LEFTY2 Missense_Mutation p.W281C 0.31 deleterious(0) probably_damaging(1) TCGA-99-7458-01 1 234367270 234367270 C T SLC35F3 Nonsense_Mutation p.Q131* 0.12 TCGA-99-7458-01 1 236902752 236902752 A T ACTN2 Missense_Mutation p.I343F 0.14 deleterious(0.01) possibly_damaging(0.826) TCGA-99-7458-01 1 237024505 237024505 T G MTR Missense_Mutation p.I708M 0.16 deleterious(0) probably_damaging(1) TCGA-99-7458-01 1 237993846 237993846 G T RYR2 Missense_Mutation p.C4891F 0.12 benign(0.414) TCGA-99-7458-01 1 240071786 240071786 C T CHRM3 Silent p.S345S 0.28 TCGA-99-7458-01 1 2429996 2429996 C A PLCH2 Silent p.P726P 0.22 TCGA-99-7458-01 1 247836182 247836182 C A OR13G1 Silent p.T54T 0.31 TCGA-99-7458-01 1 248004298 248004298 C A OR11L1 Missense_Mutation p.V301F 0.28 tolerated(0.13) benign(0.308) TCGA-99-7458-01 1 248059468 248059468 G A OR2W3 Missense_Mutation p.A194T 0.13 tolerated(0.44) benign(0.02) TCGA-99-7458-01 1 248085207 248085207 G T OR2T8 Missense_Mutation p.K296N 0.29 tolerated(0.22) benign(0.111) TCGA-99-7458-01 1 249106196 249106196 C A SH3BP5L Missense_Mutation p.S362I 0.28 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-99-7458-01 1 38227387 38227387 G T EPHA10 Silent p.I180I 0.16 TCGA-99-7458-01 1 40230563 40230563 G T BMP8B Intron 0.08 TCGA-99-7458-01 1 44750540 44750540 C T ERI3 Silent p.A266A 0.16 TCGA-99-7458-01 1 53122519 53122519 T G FAM159A Missense_Mutation p.V127G 0.18 tolerated(0.22) benign(0.178) TCGA-99-7458-01 1 55060276 55060276 G A ACOT11 Silent p.E173E 0.16 TCGA-99-7458-01 1 67142663 67142663 G T AL139147.1 5'UTR 0.23 TCGA-99-7458-01 1 70034315 70034315 C A LRRC7 5'UTR 0.19 TCGA-99-7458-01 1 70715696 70715696 A G SRSF11 Missense_Mutation p.K362E 0.17 deleterious_low_confidence(0.03) unknown(0) TCGA-99-7458-01 1 87043639 87043639 C A CLCA4 Missense_Mutation p.T669K 0.19 tolerated(1) benign(0.001) TCGA-99-7458-01 1 92161256 92161256 C A TGFBR3 Missense_Mutation p.A804S 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-99-7458-01 20 1298980 1298980 C G SDCBP2 Missense_Mutation p.Q69H 0.20 tolerated(0.14) benign(0.009) TCGA-99-7458-01 20 14307338 14307338 T C FLRT3 Missense_Mutation p.Q272R 0.23 tolerated(1) benign(0.027) TCGA-99-7458-01 20 30450488 30450488 C A DUSP15 Silent p.T107T 0.18 TCGA-99-7458-01 20 3128895 3128895 C G FASTKD5 Missense_Mutation p.K274N 0.20 tolerated(0.06) benign(0.02) TCGA-99-7458-01 20 37546820 37546820 C G PPP1R16B Silent p.P405P 0.21 TCGA-99-7458-01 20 42680134 42680134 C A TOX2 Silent p.T200T 0.25 TCGA-99-7458-01 20 62595244 62595244 C A ZNF512B Missense_Mutation p.Q501H 0.14 tolerated(0.09) benign(0.066) TCGA-99-7458-01 21 28212020 28212020 C - ADAMTS1 Frame_Shift_Del p.S639Vfs*40 0.14 TCGA-99-7458-01 21 44152188 44152188 G A PDE9A Missense_Mutation p.E151K 0.27 tolerated(0.22) possibly_damaging(0.721) TCGA-99-7458-01 21 44317035 44317035 A T NDUFV3 Splice_Site p.X17_splice 0.06 TCGA-99-7458-01 21 45711088 45711088 C A AIRE Silent p.I330I 0.27 TCGA-99-7458-01 21 45730904 45730904 G - PFKL Frame_Shift_Del p.V59Wfs*13 0.17 TCGA-99-7458-01 22 35809931 35809931 A T MCM5 Silent p.T385T 0.14 TCGA-99-7458-01 22 50518354 50518354 G C MLC1 Missense_Mutation p.A139G 0.20 deleterious_low_confidence(0.04) probably_damaging(0.994) TCGA-99-7458-01 2 10126264 10126264 G T GRHL1 Missense_Mutation p.V375L 0.21 deleterious(0) probably_damaging(0.997) TCGA-99-7458-01 2 101591311 101591311 A T NPAS2 Missense_Mutation p.D396V 0.11 deleterious(0.01) possibly_damaging(0.779) TCGA-99-7458-01 2 102476325 102476325 A T MAP4K4 Missense_Mutation p.E568V 0.20 tolerated_low_confidence(0.09) probably_damaging(0.913) TCGA-99-7458-01 2 11053359 11053359 C A KCNF1 Missense_Mutation p.S269R 0.19 deleterious(0.02) possibly_damaging(0.745) TCGA-99-7458-01 2 111850528 111850528 G T ACOXL Silent p.T509T 0.19 TCGA-99-7458-01 2 125521700 125521700 G T CNTNAP5 Missense_Mutation p.D836Y 0.19 deleterious(0) probably_damaging(0.958) TCGA-99-7458-01 2 128324281 128324281 G T MYO7B Nonsense_Mutation p.E117* 0.23 TCGA-99-7458-01 2 132021317 132021317 C A POTEE Silent p.G763G 0.13 TCGA-99-7458-01 2 133541991 133541991 T C NCKAP5 Missense_Mutation p.Q798R 0.18 tolerated(0.48) benign(0.386) TCGA-99-7458-01 2 143715264 143715264 C A KYNU Silent p.R188R 0.31 TCGA-99-7458-01 2 168115313 168115313 G A XIRP2 3'UTR 0.22 TCGA-99-7458-01 2 179446892 179446892 G T TTN Silent p.T22068T 0.13 TCGA-99-7458-01 2 179455328 179455328 G C TTN Missense_Mutation p.P20375R 0.15 TCGA-99-7458-01 2 185800718 185800718 C T ZNF804A Nonsense_Mutation p.Q199* 0.08 TCGA-99-7458-01 2 197712671 197712671 C A PGAP1 Missense_Mutation p.G651V 0.11 deleterious(0.01) probably_damaging(0.924) TCGA-99-7458-01 2 197878371 197878371 C A HNRNPA3P15 5'Flank 0.14 TCGA-99-7458-01 2 197878372 197878372 C A HNRNPA3P15 5'Flank 0.14 TCGA-99-7458-01 2 198274687 198274687 A G SF3B1 Silent p.G237G 0.20 TCGA-99-7458-01 2 1983535 1983535 G C MYT1L Silent p.T5T 0.26 TCGA-99-7458-01 2 207174855 207174855 T C ZDBF2 Missense_Mutation p.V1868A 0.11 tolerated(0.12) benign(0.153) TCGA-99-7458-01 2 207176110 207176110 G T ZDBF2 Missense_Mutation p.M2286I 0.15 tolerated(0.65) benign(0) TCGA-99-7458-01 2 210560641 210560641 C G MAP2 Silent p.L1249L 0.13 TCGA-99-7458-01 2 211163206 211163206 G T MYL1 Missense_Mutation p.A81D 0.08 deleterious(0) probably_damaging(0.996) TCGA-99-7458-01 2 212537946 212537946 C A ERBB4 Silent p.V553V 0.14 TCGA-99-7458-01 2 218999542 218999542 G A CXCR2 Missense_Mutation p.M6I 0.11 tolerated(0.41) benign(0.001) TCGA-99-7458-01 2 225729643 225729643 T C DOCK10 Silent p.R473R 0.04 TCGA-99-7458-01 2 228884712 228884712 A T SPHKAP Silent p.S286S 0.11 TCGA-99-7458-01 2 24205881 24205881 G T UBXN2A Nonsense_Mutation p.G135* 0.27 TCGA-99-7458-01 2 26569027 26569027 C T EPT1 5'UTR 0.14 TCGA-99-7458-01 2 27355541 27355541 C G PREB Missense_Mutation p.V228L 0.14 tolerated(0.19) benign(0.003) TCGA-99-7458-01 2 39494378 39494378 C A MAP4K3 Missense_Mutation p.V662L 0.14 tolerated(1) probably_damaging(0.996) TCGA-99-7458-01 2 40656493 40656493 G T SLC8A1 Missense_Mutation p.L310M 0.14 tolerated(0.28) benign(0.08) TCGA-99-7458-01 2 44508605 44508605 A G SLC3A1 Silent p.T230T 0.30 TCGA-99-7458-01 2 49210102 49210102 A G FSHR Missense_Mutation p.L206S 0.25 deleterious(0) probably_damaging(1) TCGA-99-7458-01 2 50723093 50723093 G A NRXN1 Missense_Mutation p.T1047I 0.13 deleterious(0.01) possibly_damaging(0.849) TCGA-99-7458-01 2 62228008 62228008 G C COMMD1 Missense_Mutation p.G118A 0.25 tolerated(0.8) benign(0.174) TCGA-99-7458-01 2 63283419 63283419 G A OTX1 Missense_Mutation p.D345N 0.11 deleterious(0.01) unknown(0) TCGA-99-7458-01 2 65540999 65540999 C T SPRED2 Missense_Mutation p.R298Q 0.19 deleterious(0.03) benign(0.122) TCGA-99-7458-01 2 74007070 74007070 C T DUSP11 Nonsense_Mutation p.W58* 0.17 TCGA-99-7458-01 2 74689757 74689757 C T MOGS Missense_Mutation p.E387K 0.13 tolerated(0.08) possibly_damaging(0.459) TCGA-99-7458-01 2 74709220 74709220 T - CCDC142 Frame_Shift_Del p.S249Vfs*12 0.20 TCGA-99-7458-01 2 79255428 79255428 G C REG3G 3'UTR 0.12 TCGA-99-7458-01 2 85576626 85576626 C A RETSAT Missense_Mutation p.R293L 0.16 deleterious(0.05) benign(0.04) TCGA-99-7458-01 2 88474273 88474273 G T THNSL2 Missense_Mutation p.K113N 0.20 deleterious(0) probably_damaging(1) TCGA-99-7458-01 2 89117842 89117842 G T AC096579.13 RNA 0.15 TCGA-99-7458-01 2 99013028 99013028 G T CNGA3 Missense_Mutation p.K465N 0.30 deleterious(0) benign(0.439) TCGA-99-7458-01 3 118865727 118865774 TCCGTCCCATCTGACCAAAGTCCTTCTGTACAGATTGACAGTGGATCG - C3orf30 In_Frame_Del p.S237_Q252del 0.16 TCGA-99-7458-01 3 118865753 118865753 T C C3orf30 Silent p.S239S 0.08 TCGA-99-7458-01 3 118865771 118865771 A G C3orf30 Silent p.G245G 0.07 TCGA-99-7458-01 3 118865774 118865774 G A C3orf30 Silent p.S246S 0.07 TCGA-99-7458-01 3 119325679 119325679 T C PLA1A Silent p.F44F 0.16 TCGA-99-7458-01 3 120489651 120489651 A G GTF2E1 Silent p.T175T 0.11 TCGA-99-7458-01 3 121414623 121414623 C A GOLGB1 Missense_Mutation p.G1583C 0.12 probably_damaging(0.987) TCGA-99-7458-01 3 127379625 127379625 A G PODXL2 Missense_Mutation p.T252A 0.15 tolerated(0.21) benign(0.009) TCGA-99-7458-01 3 132226082 132226082 G T DNAJC13 Missense_Mutation p.G1667V 0.13 deleterious(0.01) benign(0.387) TCGA-99-7458-01 3 13546070 13546070 A G HDAC11 Missense_Mutation p.I311V 0.10 tolerated(1) benign(0.252) TCGA-99-7458-01 3 13896107 13896107 C A WNT7A Missense_Mutation p.K164N 0.07 deleterious(0.01) benign(0.333) TCGA-99-7458-01 3 147108970 147108970 C T ZIC4 Missense_Mutation p.R301H 0.13 deleterious(0) probably_damaging(0.979) TCGA-99-7458-01 3 147113693 147113693 C A ZIC4 Missense_Mutation p.G262W 0.18 deleterious(0) probably_damaging(0.999) TCGA-99-7458-01 3 14798940 14798940 T G C3orf20 Missense_Mutation p.L668R 0.22 deleterious(0) probably_damaging(1) TCGA-99-7458-01 3 15116382 15116382 C A ZFYVE20 Missense_Mutation p.R421L 0.13 tolerated(0.3) benign(0.023) TCGA-99-7458-01 3 15499779 15499779 T C COLQ Missense_Mutation p.R290G 0.15 deleterious(0.01) unknown(0) TCGA-99-7458-01 3 164906009 164906009 C A SLITRK3 Silent p.V870V 0.15 TCGA-99-7458-01 3 169644460 169644467 CTGCCTAC - SAMD7 Frame_Shift_Del p.A138Wfs*9 0.11 TCGA-99-7458-01 3 183209738 183209738 C A KLHL6 Missense_Mutation p.V615L 0.12 tolerated_low_confidence(0.07) benign(0.039) TCGA-99-7458-01 3 186503788 186503788 T C EIF4A2 Silent p.I155I 0.09 TCGA-99-7458-01 3 194081447 194081447 G T LRRC15 Missense_Mutation p.A115D 0.09 deleterious(0) possibly_damaging(0.853) TCGA-99-7458-01 3 19575454 19575454 T A KCNH8 Missense_Mutation p.F1063I 0.10 tolerated_low_confidence(0.22) benign(0.02) TCGA-99-7458-01 3 39942332 39942332 G A MYRIP Missense_Mutation p.G9S 0.18 tolerated(0.07) benign(0.196) TCGA-99-7458-01 3 48628953 48628953 G T COL7A1 Missense_Mutation p.S527Y 0.12 unknown(0) TCGA-99-7458-01 3 51978525 51978525 G A PARP3 Silent p.V151V 0.12 TCGA-99-7458-01 3 53904143 53904143 T A ACTR8 Missense_Mutation p.S533C 0.15 deleterious(0) probably_damaging(0.989) TCGA-99-7458-01 3 73111553 73111553 C G EBLN2 Silent p.A107A 0.17 TCGA-99-7458-01 3 89499492 89499492 C A EPHA3 Missense_Mutation p.L888M 0.16 deleterious(0) probably_damaging(0.997) TCGA-99-7458-01 3 93615497 93615497 C A PROS1 Missense_Mutation p.K296N 0.20 tolerated(1) benign(0) TCGA-99-7458-01 4 100231927 100231927 C T ADH1B Silent p.G366G 0.21 TCGA-99-7458-01 4 104101595 104101595 T A CENPE Missense_Mutation p.E372V 0.10 probably_damaging(0.999) TCGA-99-7458-01 4 111539669 111539669 A T PITX2 Missense_Mutation p.L196Q 0.21 deleterious(0) probably_damaging(0.996) TCGA-99-7458-01 4 114158754 114158754 G T ANK2 Splice_Site p.X224_splice 0.17 TCGA-99-7458-01 4 134073021 134073039 GCGCCTCTACCAGGGCGCA - PCDH10 Frame_Shift_Del p.A576Tfs*45 0.15 TCGA-99-7458-01 4 154525149 154525149 C T KIAA0922 Silent p.A995A 0.10 TCGA-99-7458-01 4 159048600 159048600 T C FAM198B Missense_Mutation p.I515V 0.18 deleterious(0.01) possibly_damaging(0.658) TCGA-99-7458-01 4 160252815 160252815 G A RAPGEF2 Missense_Mutation p.A376T 0.15 deleterious(0) probably_damaging(0.996) TCGA-99-7458-01 4 164247633 164247633 A G NPY1R Missense_Mutation p.L25P 0.12 tolerated(0.14) benign(0.001) TCGA-99-7458-01 4 164271488 164271488 C A NPY5R Silent p.A21A 0.22 TCGA-99-7458-01 4 166964494 166964496 CGC GG TLL1 Frame_Shift_Del p.R483Gfs*3 0.17 TCGA-99-7458-01 4 167012334 167012334 G C TLL1 Missense_Mutation p.E833Q 0.16 tolerated(0.06) benign(0.257) TCGA-99-7458-01 4 1733028 1733028 G A TACC3 Missense_Mutation p.V531I 0.23 deleterious(0) benign(0.309) TCGA-99-7458-01 4 176561298 176561298 C T GPM6A Silent p.G222G 0.16 TCGA-99-7458-01 4 185694265 185694265 G A ACSL1 Silent p.S295S 0.19 TCGA-99-7458-01 4 186544881 186544881 G A SORBS2 Missense_Mutation p.P664S 0.12 deleterious(0.01) benign(0.117) TCGA-99-7458-01 4 26483303 26483303 C A CCKAR Missense_Mutation p.R415M 0.15 deleterious(0) possibly_damaging(0.713) TCGA-99-7458-01 4 4275328 4275328 C A LYAR Missense_Mutation p.D301Y 0.15 tolerated(0.09) benign(0.062) TCGA-99-7458-01 4 55602663 55602663 G A KIT Splice_Site p.X829_splice 0.17 TCGA-99-7458-01 4 57182249 57182249 G T KIAA1211 Missense_Mutation p.D861Y 0.12 deleterious(0) probably_damaging(0.963) TCGA-99-7458-01 4 62598746 62598746 G C LPHN3 Missense_Mutation p.E223D 0.15 deleterious(0) probably_damaging(0.998) TCGA-99-7458-01 4 68688116 68688116 G T TMPRSS11D Missense_Mutation p.P399Q 0.12 deleterious(0) probably_damaging(1) TCGA-99-7458-01 4 69111267 69111267 A C TMPRSS11B Splice_Site p.X3_splice 0.20 TCGA-99-7458-01 4 69111268 69111268 C T TMPRSS11B Splice_Site p.X3_splice 0.21 TCGA-99-7458-01 4 70080447 70080447 G A UGT2B11 5'UTR 0.15 TCGA-99-7458-01 4 70360873 70360873 T A UGT2B4 Missense_Mutation p.Y236F 0.17 deleterious(0.05) benign(0.35) TCGA-99-7458-01 4 74285336 74285336 G T ALB Nonsense_Mutation p.E589* 0.15 TCGA-99-7458-01 4 81967361 81967361 C T BMP3 Silent p.H262H 0.15 TCGA-99-7458-01 4 88055667 88055667 C T AFF1 Missense_Mutation p.A1119V 0.18 deleterious(0) unknown(0) TCGA-99-7458-01 4 96171725 96171725 G - UNC5C Frame_Shift_Del p.R230Dfs*27 0.16 TCGA-99-7458-01 5 10407232 10407232 G T MARCH6 Missense_Mutation p.V491F 0.24 deleterious(0) probably_damaging(0.964) TCGA-99-7458-01 5 109026153 109026153 G T MAN2A1 Missense_Mutation p.S12I 0.17 deleterious(0.01) possibly_damaging(0.536) TCGA-99-7458-01 5 11117652 11117652 G T CTNND2 Silent p.A729A 0.13 TCGA-99-7458-01 5 115813603 115813603 C T SEMA6A Missense_Mutation p.D530N 0.15 deleterious(0) probably_damaging(0.983) TCGA-99-7458-01 5 11732360 11732360 G T CTNND2 Missense_Mutation p.P21H 0.29 deleterious(0) possibly_damaging(0.497) TCGA-99-7458-01 5 121188294 121188294 G T FTMT Silent p.V212V 0.14 TCGA-99-7458-01 5 121786272 121786272 C A SNCAIP Missense_Mutation p.P577Q 0.18 tolerated_low_confidence(0.16) possibly_damaging(0.544) TCGA-99-7458-01 5 127595228 127595228 C A FBN2 Silent p.L2886L 0.15 TCGA-99-7458-01 5 128362849 128362849 C A SLC27A6 Silent p.R427R 0.14 TCGA-99-7458-01 5 135383018 135383018 G C TGFBI Missense_Mutation p.G227A 0.13 deleterious(0) probably_damaging(0.999) TCGA-99-7458-01 5 140038606 140038606 G T IK Nonsense_Mutation p.E345* 0.16 TCGA-99-7458-01 5 140176297 140176297 G A PCDHA2 Nonsense_Mutation p.W583* 0.10 TCGA-99-7458-01 5 140202930 140202930 C T PCDHA5 Missense_Mutation p.H524Y 0.16 tolerated_low_confidence(0.21) benign(0.166) TCGA-99-7458-01 5 140474443 140474443 G T PCDHB2 Silent p.L23L 0.11 TCGA-99-7458-01 5 140481091 140481091 A T PCDHB3 Missense_Mutation p.E286D 0.16 tolerated_low_confidence(0.4) benign(0.007) TCGA-99-7458-01 5 140503916 140503916 G T PCDHB4 Missense_Mutation p.G779V 0.16 deleterious_low_confidence(0.04) benign(0.013) TCGA-99-7458-01 5 140531365 140531365 C T PCDHB6 Silent p.G509G 0.15 TCGA-99-7458-01 5 140558989 140558989 C A PCDHB8 Silent p.T458T 0.11 TCGA-99-7458-01 5 140574002 140574002 C T PCDHB10 Missense_Mutation p.T626I 0.15 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-99-7458-01 5 140574378 140574378 C A PCDHB10 Nonsense_Mutation p.Y751* 0.11 TCGA-99-7458-01 5 140603152 140603152 G A PCDHB14 Silent p.R25R 0.19 TCGA-99-7458-01 5 140723667 140723667 C T PCDHGA3 Silent p.L23L 0.15 TCGA-99-7458-01 5 140725254 140725254 G T PCDHGA3 Missense_Mutation p.V552L 0.20 tolerated_low_confidence(0.05) benign(0.332) TCGA-99-7458-01 5 140725835 140725835 G T PCDHGA3 Silent p.G745G 0.11 TCGA-99-7458-01 5 140732157 140732157 T A PCDHGB1 Missense_Mutation p.L777Q 0.20 deleterious(0.02) probably_damaging(0.959) TCGA-99-7458-01 5 140801052 140801052 C G PCDHGA11 Missense_Mutation p.I86M 0.20 deleterious_low_confidence(0) benign(0.376) TCGA-99-7458-01 5 141243248 141243248 T C PCDH1 Missense_Mutation p.K883R 0.19 tolerated(0.17) probably_damaging(0.997) TCGA-99-7458-01 5 148206928 148206928 C A ADRB2 Missense_Mutation p.H178Q 0.12 tolerated(0.07) benign(0.017) TCGA-99-7458-01 5 148420208 148420208 C A SH3TC2 Missense_Mutation p.G255V 0.22 deleterious(0) possibly_damaging(0.774) TCGA-99-7458-01 5 150945590 150945590 G T FAT2 Missense_Mutation p.A968D 0.14 benign(0.297) TCGA-99-7458-01 5 150946786 150946786 A G FAT2 Silent p.C569C 0.09 TCGA-99-7458-01 5 154320679 154320679 G T MRPL22 Silent p.A3A 0.15 TCGA-99-7458-01 5 157158616 157158616 G A THG1L Silent p.R56R 0.15 TCGA-99-7458-01 5 161128728 161128728 G A GABRA6 Nonsense_Mutation p.W437* 0.18 TCGA-99-7458-01 5 161580240 161580240 T A GABRG2 Missense_Mutation p.C472S 0.13 deleterious(0.03) probably_damaging(0.996) TCGA-99-7458-01 5 175110087 175110087 C T HRH2 5'UTR 0.10 TCGA-99-7458-01 5 176047764 176047764 C A SNCB 3'UTR 0.16 TCGA-99-7458-01 5 179227513 179227513 C G MGAT4B Missense_Mutation p.E245D 0.14 tolerated(0.12) benign(0.348) TCGA-99-7458-01 5 179227594 179227594 G T MGAT4B Missense_Mutation p.F218L 0.12 deleterious(0.04) possibly_damaging(0.873) TCGA-99-7458-01 5 195068 195068 T A LRRC14B Missense_Mutation p.L382Q 0.28 tolerated(0.57) benign(0.073) TCGA-99-7458-01 5 21752095 21752095 G A CDH12 Silent p.D712D 0.18 TCGA-99-7458-01 5 33462222 33462222 G A TARS Silent p.K616K 0.17 TCGA-99-7458-01 5 35871178 35871178 G T IL7R Missense_Mutation p.D134Y 0.23 deleterious(0.01) probably_damaging(0.977) TCGA-99-7458-01 5 37169412 37169412 G A C5orf42 Silent p.P2238P 0.08 TCGA-99-7458-01 5 45262209 45262209 T C HCN1 Silent p.A829A 0.21 TCGA-99-7458-01 5 5239793 5239793 G T ADAMTS16 Splice_Site p.X760_splice 0.24 TCGA-99-7458-01 5 56777820 56777820 G T ACTBL2 Silent p.R239R 0.18 TCGA-99-7458-01 5 678034 678034 G A TPPP Missense_Mutation p.L48F 0.11 deleterious(0.01) possibly_damaging(0.721) TCGA-99-7458-01 5 7869320 7869320 G T MTRR Intron 0.17 TCGA-99-7458-01 5 80109418 80109418 G T MSH3 Missense_Mutation p.V891L 0.15 deleterious(0.04) possibly_damaging(0.497) TCGA-99-7458-01 6 112457342 112457342 C G LAMA4 Missense_Mutation p.D1133H 0.18 deleterious(0) probably_damaging(1) TCGA-99-7458-01 6 117121757 117121757 C T GPRC6A Missense_Mutation p.R513K 0.23 tolerated(0.94) benign(0) TCGA-99-7458-01 6 132891761 132891761 G - TAAR6 Frame_Shift_Del p.R102Gfs*83 0.22 TCGA-99-7458-01 6 133072284 133072284 C A VNN2 Missense_Mutation p.Q400H 0.15 deleterious(0) possibly_damaging(0.838) TCGA-99-7458-01 6 138628520 138628520 G T KIAA1244 Missense_Mutation p.G1320V 0.12 tolerated(0.11) probably_damaging(0.994) TCGA-99-7458-01 6 143823540 143823540 C G FUCA2 Missense_Mutation p.R305S 0.04 deleterious(0.01) possibly_damaging(0.848) TCGA-99-7458-01 6 147704039 147704039 G T STXBP5 Missense_Mutation p.A1107S 0.13 tolerated(0.13) possibly_damaging(0.887) TCGA-99-7458-01 6 149340286 149340286 G T UST Missense_Mutation p.E231D 0.12 tolerated(0.43) benign(0.028) TCGA-99-7458-01 6 152737815 152737815 T C SYNE1 Silent p.L1919L 0.15 TCGA-99-7458-01 6 153043182 153043182 C A MYCT1 Missense_Mutation p.H168N 0.14 deleterious(0.02) probably_damaging(0.996) TCGA-99-7458-01 6 157527447 157527447 G T ARID1B Missense_Mutation p.L1724F 0.13 benign(0.205) TCGA-99-7458-01 6 157528318 157528318 G T ARID1B Missense_Mutation p.D2015Y 0.13 probably_damaging(0.999) TCGA-99-7458-01 6 160468236 160468236 A G IGF2R Silent p.S699S 0.14 TCGA-99-7458-01 6 165715274 165715274 C A C6orf118 Silent p.L179L 0.23 TCGA-99-7458-01 6 167595301 167595301 G A TCP10L2 Missense_Mutation p.R320Q 0.10 tolerated(0.82) benign(0.002) TCGA-99-7458-01 6 168479740 168479740 G T FRMD1 Missense_Mutation p.P12H 0.20 tolerated_low_confidence(0.08) benign(0.047) TCGA-99-7458-01 6 25619837 25619837 G C LRRC16A 3'UTR 0.17 TCGA-99-7458-01 6 29429522 29429522 C A OR2H1 5'UTR 0.19 TCGA-99-7458-01 6 30104804 30104804 G T TRIM40 5'UTR 0.08 TCGA-99-7458-01 6 41773944 41773944 T A USP49 Missense_Mutation p.N260Y 0.08 deleterious(0) probably_damaging(0.981) TCGA-99-7458-01 6 42672193 42672193 C T PRPH2 Nonsense_Mutation p.W246* 0.09 TCGA-99-7458-01 6 43020329 43020329 C A CUL7 Silent p.L118L 0.09 TCGA-99-7458-01 6 44310868 44310868 G A SPATS1 Silent p.R12R 0.17 TCGA-99-7458-01 6 4892523 4892523 G T CDYL Missense_Mutation p.G201W 0.19 deleterious(0) probably_damaging(0.999) TCGA-99-7458-01 6 49580220 49580220 C A RHAG Nonsense_Mutation p.G279* 0.20 TCGA-99-7458-01 6 53385617 53385617 T C GCLC Silent p.L135L 0.08 TCGA-99-7458-01 6 55198661 55198661 C G GFRAL Missense_Mutation p.Q79E 0.20 tolerated(0.66) benign(0.007) TCGA-99-7458-01 6 56471533 56471533 A T DST Intron 0.15 TCGA-99-7458-01 6 56471763 56471763 C A DST Intron 0.16 TCGA-99-7458-01 6 72960115 72960115 G A RIMS1 Missense_Mutation p.G775E 0.19 deleterious(0) probably_damaging(0.997) TCGA-99-7458-01 6 75840577 75840577 C A COL12A1 Missense_Mutation p.G2020C 0.19 probably_damaging(0.969) TCGA-99-7458-01 6 80745022 80745023 - G TTK Frame_Shift_Ins p.N606Kfs*3 0.22 TCGA-99-7458-01 6 84799141 84799141 C A MRAP2 Missense_Mutation p.P187T 0.15 deleterious(0.03) benign(0.003) TCGA-99-7458-01 6 85447051 85447051 G A TBX18 Silent p.G392G 0.14 TCGA-99-7458-01 6 9903606 9903606 C A OFCC1 Intron 0.16 TCGA-99-7458-01 7 100732499 100732499 G T TRIM56 Missense_Mutation p.A636S 0.17 tolerated(0.11) probably_damaging(0.96) TCGA-99-7458-01 7 103151413 103151413 T A RELN Missense_Mutation p.E2720V 0.26 deleterious(0.02) probably_damaging(0.985) TCGA-99-7458-01 7 113558946 113558946 C A PPP1R3A Missense_Mutation p.G36C 0.14 deleterious(0.04) probably_damaging(0.95) TCGA-99-7458-01 7 119915431 119915431 G T KCND2 Missense_Mutation p.A249S 0.15 deleterious(0.04) benign(0.063) TCGA-99-7458-01 7 126086184 126086184 G T GRM8 Silent p.T891T 0.17 TCGA-99-7458-01 7 132192798 132192798 G T PLXNA4 Missense_Mutation p.H219N 0.13 tolerated(0.11) probably_damaging(0.973) TCGA-99-7458-01 7 141672456 141672456 G C TAS2R38 3'UTR 0.24 TCGA-99-7458-01 7 142231575 142231575 C A TRBV10-1 Missense_Mutation p.E114D 0.15 tolerated(0.69) benign(0.001) TCGA-99-7458-01 7 142561931 142561931 C A EPHB6 Silent p.R125R 0.20 TCGA-99-7458-01 7 142750269 142750269 G A OR6V1 Missense_Mutation p.V278I 0.18 tolerated(0.57) benign(0.208) TCGA-99-7458-01 7 143141079 143141079 G T TAS2R60 Missense_Mutation p.W178C 0.15 deleterious(0) probably_damaging(0.911) TCGA-99-7458-01 7 143701858 143701858 T C OR6B1 Missense_Mutation p.Y257H 0.09 deleterious(0) probably_damaging(1) TCGA-99-7458-01 7 143792483 143792483 C - OR2A12 Frame_Shift_Del p.P95Lfs*18 0.19 TCGA-99-7458-01 7 14724966 14724966 G T DGKB Missense_Mutation p.H245N 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-99-7458-01 7 150715032 150715032 T C ATG9B Missense_Mutation p.T660A 0.21 deleterious(0.02) benign(0.05) TCGA-99-7458-01 7 151716812 151716812 C A GALNTL5 Missense_Mutation p.L420M 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-99-7458-01 7 151970805 151970805 G T KMT2C Missense_Mutation p.Q333K 0.03 possibly_damaging(0.792) TCGA-99-7458-01 7 155538132 155538132 G T RBM33 Nonsense_Mutation p.E939* 0.19 TCGA-99-7458-01 7 27238029 27238029 A T HOXA13 Missense_Mutation p.Y319N 0.15 deleterious(0) possibly_damaging(0.898) TCGA-99-7458-01 7 37354511 37354512 - T ELMO1 Frame_Shift_Ins p.N45Kfs*3 0.13 TCGA-99-7458-01 7 38433709 38433709 C T AMPH Missense_Mutation p.G502R 0.15 tolerated(0.07) benign(0.005) TCGA-99-7458-01 7 43916860 43916860 T C URGCP Silent p.T734T 0.24 TCGA-99-7458-01 7 43917673 43917673 G T URGCP Missense_Mutation p.D463E 0.18 deleterious(0) probably_damaging(0.999) TCGA-99-7458-01 7 64168858 64168858 G T ZNF107 Missense_Mutation p.G726C 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-99-7458-01 7 75959153 75959153 T A YWHAG Missense_Mutation p.K162I 0.18 deleterious_low_confidence(0.05) benign(0.178) TCGA-99-7458-01 7 76111844 76111844 G A DTX2 Silent p.R96R 0.17 TCGA-99-7458-01 7 82545660 82545660 G C PCLO Missense_Mutation p.P3881R 0.14 unknown(0) TCGA-99-7458-01 7 86824364 86824364 C A DMTF1 Missense_Mutation p.H731N 0.10 deleterious_low_confidence(0.04) benign(0.215) TCGA-99-7458-01 7 909028 909028 C T SUN1 Nonsense_Mutation p.Q675* 0.17 TCGA-99-7458-01 7 99015095 99015095 C G BUD31 Missense_Mutation p.N87K 0.15 tolerated(0.14) benign(0.062) TCGA-99-7458-01 7 99030992 99030992 C A ATP5J2-PTCD1 Missense_Mutation p.R217L 0.16 deleterious(0) probably_damaging(0.956) TCGA-99-7458-01 8 103667925 103667925 C T KLF10 5'UTR 0.25 TCGA-99-7458-01 8 10466663 10466663 C A RP1L1 Nonsense_Mutation p.E1649* 0.22 TCGA-99-7458-01 8 105257206 105257206 G T RIMS2 Nonsense_Mutation p.E1133* 0.20 TCGA-99-7458-01 8 105361085 105361085 G T DCSTAMP Missense_Mutation p.G102V 0.19 deleterious(0) probably_damaging(1) TCGA-99-7458-01 8 113402960 113402960 G T CSMD3 Missense_Mutation p.P1956H 0.27 deleterious(0) probably_damaging(1) TCGA-99-7458-01 8 113697783 113697783 T A CSMD3 Missense_Mutation p.K778N 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-99-7458-01 8 120651050 120651050 C G ENPP2 5'UTR 0.12 TCGA-99-7458-01 8 133935738 133935738 G T TG Missense_Mutation p.D1562Y 0.23 deleterious(0) possibly_damaging(0.885) TCGA-99-7458-01 8 145999678 145999678 G A ZNF34 Missense_Mutation p.S219L 0.21 deleterious(0.03) benign(0.002) TCGA-99-7458-01 8 20022571 20022571 G T SLC18A1 Silent p.I302I 0.20 TCGA-99-7458-01 8 36698038 36698038 C T KCNU1 Silent p.L526L 0.20 TCGA-99-7458-01 8 51314903 51314903 G T SNTG1 Missense_Mutation p.G54V 0.10 deleterious(0.05) benign(0.142) TCGA-99-7458-01 8 53853025 53853025 C A NPBWR1 Silent p.R186R 0.22 TCGA-99-7458-01 8 91075512 91075512 G C CALB1 Missense_Mutation p.F181L 0.20 deleterious(0.02) probably_damaging(0.976) TCGA-99-7458-01 8 95178176 95178176 A T CDH17 Missense_Mutation p.H365Q 0.21 tolerated(0.36) benign(0.024) TCGA-99-7458-01 9 100286423 100286423 G T TMOD1 Intron 0.27 TCGA-99-7458-01 9 101810113 101810113 G T COL15A1 Missense_Mutation p.G909W 0.33 deleterious(0) probably_damaging(1) TCGA-99-7458-01 9 125281713 125281713 A G OR1J4 Silent p.V98V 0.31 TCGA-99-7458-01 9 127255381 127255381 C T NR5A1 Silent p.L306L 0.37 TCGA-99-7458-01 9 133485348 133485348 C - FUBP3 Frame_Shift_Del p.Q67Sfs*2 0.24 TCGA-99-7458-01 9 137676928 137676928 C T COL5A1 Missense_Mutation p.P860S 0.08 unknown(0) TCGA-99-7458-01 9 139409097 139409097 C - NOTCH1 Frame_Shift_Del p.G691Afs*81 0.20 TCGA-99-7458-01 9 140991002 140991002 C A CACNA1B Missense_Mutation p.L1721I 0.31 deleterious(0.01) possibly_damaging(0.572) TCGA-99-7458-01 9 23701398 23701398 G T ELAVL2 Missense_Mutation p.A231D 0.19 deleterious(0.04) benign(0.028) TCGA-99-7458-01 9 35043876 35043887 GAGAAAACTCAG - C9orf131 In_Frame_Del p.E418_G421del 0.12 TCGA-99-7458-01 9 43822694 43822694 A T CNTNAP3B Silent p.S416S 0.20 TCGA-99-7458-01 9 6015050 6015050 G A RANBP6 Silent p.D186D 0.20 TCGA-99-7458-01 9 8492961 8492961 G T PTPRD Missense_Mutation p.L790I 0.19 deleterious(0) possibly_damaging(0.526) TCGA-99-7458-01 9 94486708 94486708 G T ROR2 Missense_Mutation p.L690M 0.30 deleterious(0.04) probably_damaging(0.973) TCGA-99-7458-01 X 10035347 10035347 C T WWC3 Missense_Mutation p.P13S 0.15 deleterious(0) probably_damaging(1) TCGA-99-7458-01 X 10096748 10096748 G T WWC3 Missense_Mutation p.R811L 0.29 deleterious(0.01) possibly_damaging(0.906) TCGA-99-7458-01 X 101970569 101970569 C A GPRASP2 Missense_Mutation p.H258N 0.18 tolerated(0.19) possibly_damaging(0.854) TCGA-99-7458-01 X 101971085 101971085 A T GPRASP2 Missense_Mutation p.S430C 0.14 tolerated(0.14) possibly_damaging(0.765) TCGA-99-7458-01 X 104993096 104993096 G T IL1RAPL2 Missense_Mutation p.D398Y 0.18 deleterious(0) probably_damaging(0.971) TCGA-99-7458-01 X 105277592 105277592 G T SERPINA7 Missense_Mutation p.P383T 0.14 tolerated(0.11) possibly_damaging(0.725) TCGA-99-7458-01 X 106186365 106186365 G C MORC4 Missense_Mutation p.P586A 0.15 tolerated(0.42) benign(0.04) TCGA-99-7458-01 X 106310791 106310791 G T RBM41 Missense_Mutation p.A403D 0.13 deleterious_low_confidence(0.05) benign(0.068) TCGA-99-7458-01 X 107975899 107975899 G T IRS4 Missense_Mutation p.P1226T 0.21 deleterious_low_confidence(0) unknown(0) TCGA-99-7458-01 X 109560903 109560903 A T AMMECR1 Missense_Mutation p.F133I 0.21 deleterious(0) possibly_damaging(0.857) TCGA-99-7458-01 X 114540908 114540908 C T LUZP4 Nonsense_Mutation p.R161* 0.22 TCGA-99-7458-01 X 117032802 117032802 G T KLHL13 3'UTR 0.11 TCGA-99-7458-01 X 117960036 117960036 G A ZCCHC12 Missense_Mutation p.V277M 0.15 deleterious(0) probably_damaging(0.998) TCGA-99-7458-01 X 118699205 118699205 G T CXorf56 Silent p.V38V 0.12 TCGA-99-7458-01 X 120182641 120182641 A T GLUD2 Missense_Mutation p.E368V 0.13 deleterious(0.03) benign(0.187) TCGA-99-7458-01 X 123191729 123191729 A G STAG2 Missense_Mutation p.R440G 0.10 tolerated(0.37) benign(0.007) TCGA-99-7458-01 X 123779114 123779114 C A TENM1 Missense_Mutation p.K585N 0.20 deleterious(0) probably_damaging(0.988) TCGA-99-7458-01 X 129147583 129147583 G T BCORL1 Missense_Mutation p.A279S 0.17 unknown(0) TCGA-99-7458-01 X 129149725 129149725 C T BCORL1 Missense_Mutation p.H993Y 0.19 probably_damaging(0.959) TCGA-99-7458-01 X 131212489 131212489 G C FRMD7 Missense_Mutation p.P519R 0.16 tolerated(0.1) benign(0.197) TCGA-99-7458-01 X 133303882 133303882 A T MIR20B RNA 0.13 TCGA-99-7458-01 X 135427714 135427714 G T GPR112 Nonsense_Mutation p.G617* 0.15 TCGA-99-7458-01 X 135429187 135429187 G T GPR112 Nonsense_Mutation p.E1108* 0.19 TCGA-99-7458-01 X 135741549 135741549 C A CD40LG Missense_Mutation p.T254K 0.15 deleterious(0) probably_damaging(0.998) TCGA-99-7458-01 X 136112640 136112640 A G GPR101 Silent p.A398A 0.16 TCGA-99-7458-01 X 139586844 139586844 T A SOX3 Missense_Mutation p.S128C 0.14 deleterious(0.01) benign(0.282) TCGA-99-7458-01 X 140984797 140984797 C T MAGEC3 Missense_Mutation p.S418F 0.13 tolerated(0.1) possibly_damaging(0.713) TCGA-99-7458-01 X 144337419 144337419 G T SPANXN1 3'UTR 0.06 TCGA-99-7458-01 X 14861873 14861873 G A FANCB Missense_Mutation p.A799V 0.24 tolerated(1) benign(0.001) TCGA-99-7458-01 X 149013098 149013098 G A MAGEA8 Missense_Mutation p.A18T 0.23 tolerated(0.18) probably_damaging(1) TCGA-99-7458-01 X 151303513 151303513 C A MAGEA10 Missense_Mutation p.V194L 0.15 tolerated(0.1) benign(0.034) TCGA-99-7458-01 X 151869560 151869560 T G MAGEA6 Missense_Mutation p.Y84D 0.16 tolerated(1) benign(0.001) TCGA-99-7458-01 X 151996441 151996441 C T CETN2 Missense_Mutation p.G155R 0.14 tolerated(0.05) probably_damaging(0.927) TCGA-99-7458-01 X 152159318 152159318 G T PNMA5 Missense_Mutation p.H275Q 0.20 tolerated(1) benign(0) TCGA-99-7458-01 X 152226044 152226044 G T PNMA3 Missense_Mutation p.G211V 0.12 deleterious(0) probably_damaging(0.999) TCGA-99-7458-01 X 15306042 15306042 G T ASB11 Missense_Mutation p.P270T 0.16 deleterious(0.02) probably_damaging(0.986) TCGA-99-7458-01 X 153295809 153295809 C A MECP2 3'UTR 0.16 TCGA-99-7458-01 X 153295921 153295921 C A MECP2 Missense_Mutation p.R465L 0.15 tolerated_low_confidence(0.15) unknown(0) TCGA-99-7458-01 X 153716657 153716657 C A SLC10A3 Missense_Mutation p.G208V 0.13 deleterious(0) probably_damaging(1) TCGA-99-7458-01 X 15618935 15618935 G T ACE2 Missense_Mutation p.H34N 0.13 tolerated(0.35) benign(0) TCGA-99-7458-01 X 1584210 1584210 G C P2RY8 3'UTR 0.35 TCGA-99-7458-01 X 16168473 16168473 C A GRPR Silent p.A153A 0.17 TCGA-99-7458-01 X 17047678 17047678 C A REPS2 Missense_Mutation p.Q235K 0.13 deleterious(0.03) benign(0.345) TCGA-99-7458-01 X 19984254 19984254 G T CXorf23 Silent p.S185S 0.23 TCGA-99-7458-01 X 21875099 21875099 C A YY2 Missense_Mutation p.T166K 0.21 tolerated(0.32) benign(0.031) TCGA-99-7458-01 X 24552145 24552145 A T PDK3 Missense_Mutation p.S393C 0.08 deleterious(0.01) probably_damaging(0.97) TCGA-99-7458-01 X 26212836 26212836 C T MAGEB6 Silent p.L291L 0.07 TCGA-99-7458-01 X 3002504 3002504 C A ARSF Missense_Mutation p.S209R 0.11 tolerated(0.42) benign(0.037) TCGA-99-7458-01 X 30326724 30326724 C A NR0B1 Missense_Mutation p.V253L 0.21 tolerated(0.19) benign(0.06) TCGA-99-7458-01 X 30327329 30327329 C T NR0B1 Missense_Mutation p.R51K 0.16 deleterious_low_confidence(0.04) benign(0.002) TCGA-99-7458-01 X 3229391 3229391 C A MXRA5 Missense_Mutation p.V2285L 0.15 tolerated(0.08) benign(0.193) TCGA-99-7458-01 X 3239278 3239278 G T MXRA5 Missense_Mutation p.P1483H 0.19 tolerated(0.07) possibly_damaging(0.628) TCGA-99-7458-01 X 32466669 32466669 A G DMD Silent p.P1230P 0.06 TCGA-99-7458-01 X 35820687 35820687 T A MAGEB16 Missense_Mutation p.L125Q 0.18 deleterious(0.02) probably_damaging(1) TCGA-99-7458-01 X 47107328 47107328 G C USP11 Nonstop_Mutation p.*964Sext*40 0.17 TCGA-99-7458-01 X 48831665 48831665 C A GRIPAP1 Missense_Mutation p.D779Y 0.11 probably_damaging(0.951) TCGA-99-7458-01 X 50053979 50053979 C T CCNB3 Missense_Mutation p.P937L 0.14 tolerated(0.15) benign(0.007) TCGA-99-7458-01 X 50163469 50163469 G T DGKK RNA 0.14 TCGA-99-7458-01 X 50377606 50377606 G T SHROOM4 Missense_Mutation p.H489Q 0.12 tolerated(0.1) benign(0.052) TCGA-99-7458-01 X 54275959 54275959 A T WNK3 Missense_Mutation p.V941E 0.19 tolerated(0.12) benign(0.066) TCGA-99-7458-01 X 54783638 54783638 G T ITIH6 Missense_Mutation p.L957M 0.23 deleterious(0.03) probably_damaging(0.946) TCGA-99-7458-01 X 57936015 57936015 C A ZXDA Missense_Mutation p.K280N 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-99-7458-01 X 6069174 6069174 G C NLGN4X Missense_Mutation p.Q112E 0.19 deleterious(0) possibly_damaging(0.875) TCGA-99-7458-01 X 63411755 63411755 T C AMER1 Missense_Mutation p.Y471C 0.16 deleterious(0) probably_damaging(1) TCGA-99-7458-01 X 63411772 63411772 G - AMER1 Frame_Shift_Del p.N466Ifs*75 0.12 TCGA-99-7458-01 X 67943859 67943859 G A STARD8 Silent p.V1030V 0.14 TCGA-99-7458-01 X 68749663 68749663 C T FAM155B Missense_Mutation p.P428L 0.20 deleterious(0.03) benign(0.114) TCGA-99-7458-01 X 70145939 70145939 A T SLC7A3 Missense_Mutation p.F570L 0.20 deleterious(0.02) benign(0.327) TCGA-99-7458-01 X 70349190 70349190 C A MED12 Missense_Mutation p.S1201Y 0.07 benign(0.108) TCGA-99-7458-01 X 71351284 71351284 A T RGAG4 Missense_Mutation p.L36H 0.12 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-99-7458-01 X 73065307 73065307 T A XIST RNA 0.12 TCGA-99-7458-01 X 74670759 74670759 T A ZDHHC15 Splice_Site p.X87_splice 0.25 TCGA-99-7458-01 X 75004218 75004218 C T MAGEE2 Silent p.R223R 0.32 TCGA-99-7458-01 X 75395337 75395337 G T PBDC1 Silent p.L62L 0.10 TCGA-99-7458-01 X 76890137 76890137 G T ATRX Missense_Mutation p.P1586Q 0.08 benign(0.155) TCGA-99-7458-01 X 77380449 77380449 C A PGK1 Missense_Mutation p.P339T 0.07 deleterious(0) probably_damaging(0.998) TCGA-99-7458-01 X 77913593 77913593 G T ZCCHC5 Missense_Mutation p.P109T 0.19 tolerated_low_confidence(0.09) benign(0.086) TCGA-99-7458-01 X 78216850 78216850 C T P2RY10 Missense_Mutation p.P278L 0.08 tolerated(0.79) benign(0.005) TCGA-99-7458-01 X 84342616 84342616 G T APOOL Missense_Mutation p.D247Y 0.27 deleterious(0) probably_damaging(1) TCGA-99-7458-01 X 89177650 89177650 C G TGIF2LX Missense_Mutation p.P189R 0.13 tolerated(0.17) probably_damaging(0.997) TCGA-99-8025-01 10 103310561 103310561 G T BTRC Missense_Mutation p.A588S 0.43 tolerated_low_confidence(0.95) benign(0.001) TCGA-99-8025-01 10 106057398 106057398 C T GSTO2 Silent p.L177L 0.16 TCGA-99-8025-01 10 121212659 121212659 G A GRK5 Missense_Mutation p.M515I 0.18 tolerated(0.15) benign(0.181) TCGA-99-8025-01 10 124249141 124249141 A T HTRA1 Missense_Mutation p.Q259L 0.51 tolerated(0.07) benign(0.041) TCGA-99-8025-01 10 124399868 124399868 C T DMBT1 Missense_Mutation p.H2290Y 0.18 deleterious(0.02) possibly_damaging(0.677) TCGA-99-8025-01 10 124896633 124896633 C T HMX3 Missense_Mutation p.P154S 0.24 tolerated(0.08) possibly_damaging(0.449) TCGA-99-8025-01 10 22616706 22616706 C T BMI1 Missense_Mutation p.H101Y 0.23 tolerated(0.73) benign(0.005) TCGA-99-8025-01 10 23326212 23326212 G T ARMC3 Missense_Mutation p.R808I 0.55 deleterious(0) possibly_damaging(0.857) TCGA-99-8025-01 10 24889620 24889620 T A ARHGAP21 Silent p.L1029L 0.46 TCGA-99-8025-01 10 26465699 26465699 C G MYO3A Missense_Mutation p.L1455V 0.17 deleterious_low_confidence(0.03) probably_damaging(0.915) TCGA-99-8025-01 10 26508002 26508002 C A GAD2 Missense_Mutation p.P106H 0.29 tolerated(0.25) benign(0.203) TCGA-99-8025-01 10 29784068 29784068 A C SVIL Missense_Mutation p.I1236S 0.16 deleterious(0.03) benign(0.004) TCGA-99-8025-01 10 32573694 32573694 G A EPC1 Missense_Mutation p.A559V 0.14 tolerated(0.11) benign(0.26) TCGA-99-8025-01 10 37508156 37508156 A G ANKRD30A Missense_Mutation p.I1116M 0.11 tolerated(0.08) benign(0.137) TCGA-99-8025-01 10 38121908 38121908 C A ZNF248 Missense_Mutation p.L125F 0.21 tolerated(0.34) possibly_damaging(0.548) TCGA-99-8025-01 10 43613825 43613825 C A RET Missense_Mutation p.N763K 0.27 deleterious(0.01) probably_damaging(0.979) TCGA-99-8025-01 10 49812824 49812824 G A ARHGAP22 Silent p.I6I 0.07 TCGA-99-8025-01 10 50954894 50954894 C A OGDHL Missense_Mutation p.A400S 0.42 tolerated(0.16) probably_damaging(0.989) TCGA-99-8025-01 10 55892758 55892758 G A PCDH15 Silent p.I598I 0.17 TCGA-99-8025-01 10 61802447 61802447 T C ANK3 3'UTR 0.10 TCGA-99-8025-01 10 71692333 71692333 C A COL13A1 Silent p.A556A 0.12 TCGA-99-8025-01 10 73544672 73544672 G A CDH23 Missense_Mutation p.D1848N 0.17 deleterious(0.01) possibly_damaging(0.908) TCGA-99-8025-01 10 76732321 76732321 G C KAT6B Missense_Mutation p.E329Q 0.23 possibly_damaging(0.847) TCGA-99-8025-01 10 87615795 87615795 G T GRID1 Silent p.T368T 0.41 TCGA-99-8025-01 10 91468937 91468937 A T KIF20B Missense_Mutation p.E54V 0.47 deleterious(0.01) probably_damaging(0.997) TCGA-99-8025-01 11 100141900 100141900 A T CNTN5 Silent p.R747R 0.30 TCGA-99-8025-01 11 109294730 109294730 C A C11orf87 Missense_Mutation p.T124N 0.38 tolerated_low_confidence(0.34) benign(0.003) TCGA-99-8025-01 11 109294862 109294862 C T C11orf87 Missense_Mutation p.P168L 0.30 deleterious_low_confidence(0.04) benign(0.006) TCGA-99-8025-01 11 111745735 111745735 C G FDXACB1 Missense_Mutation p.D596H 0.16 deleterious(0) probably_damaging(1) TCGA-99-8025-01 11 1157924 1157924 C A MUC5AC Missense_Mutation p.P331T 0.18 deleterious(0.01) possibly_damaging(0.653) TCGA-99-8025-01 11 117779460 117779460 C A TMPRSS13 Silent p.A383A 0.42 TCGA-99-8025-01 11 118250165 118250165 C A UBE4A Missense_Mutation p.H533N 0.17 tolerated(0.29) benign(0.19) TCGA-99-8025-01 11 118501990 118501990 G A PHLDB1 Missense_Mutation p.E632K 0.09 deleterious(0.03) possibly_damaging(0.9) TCGA-99-8025-01 11 119230296 119230296 G A USP2 Silent p.Y300Y 0.22 TCGA-99-8025-01 11 123513205 123513205 G T SCN3B Silent p.R132R 0.36 TCGA-99-8025-01 11 123909115 123909115 G T OR10G7 Silent p.I198I 0.18 TCGA-99-8025-01 11 128709193 128709193 C T KCNJ1 Missense_Mutation p.G335R 0.20 deleterious(0.02) benign(0.08) TCGA-99-8025-01 11 128842458 128842458 T C ARHGAP32 Missense_Mutation p.R1301G 0.23 deleterious_low_confidence(0.01) benign(0.445) TCGA-99-8025-01 11 129758493 129758493 G T NFRKB Missense_Mutation p.F124L 0.22 tolerated(0.59) unknown(0) TCGA-99-8025-01 11 130060525 130060525 C T ST14 Missense_Mutation p.R271C 0.29 tolerated(0.35) benign(0.002) TCGA-99-8025-01 11 130064107 130064107 C G ST14 Silent p.L313L 0.15 TCGA-99-8025-01 11 133790522 133790522 C T IGSF9B Missense_Mutation p.G1033E 0.18 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-99-8025-01 11 133807299 133807299 A T IGSF9B Silent p.A217A 0.38 TCGA-99-8025-01 11 17428910 17428910 C G ABCC8 Missense_Mutation p.E971Q 0.24 tolerated(0.1) benign(0.014) TCGA-99-8025-01 11 17538963 17538963 C T USH1C Intron 0.30 TCGA-99-8025-01 11 1955836 1955836 G C TNNT3 Missense_Mutation p.E181Q 0.25 deleterious(0.02) possibly_damaging(0.69) TCGA-99-8025-01 11 27406969 27406969 C G LGR4 Missense_Mutation p.E150Q 0.37 tolerated(0.07) benign(0.378) TCGA-99-8025-01 11 281643 281643 G A NLRP6 Missense_Mutation p.A637T 0.28 deleterious(0) possibly_damaging(0.871) TCGA-99-8025-01 11 294191 294191 G T ATHL1 Silent p.G601G 0.23 TCGA-99-8025-01 11 2981071 2981071 G A NAP1L4 Silent p.Y225Y 0.32 TCGA-99-8025-01 11 30946907 30946907 A T DCDC1 Missense_Mutation p.N982K 0.32 deleterious(0.01) benign(0.188) TCGA-99-8025-01 11 36594979 36594979 C A RAG1 Missense_Mutation p.P42H 0.23 deleterious_low_confidence(0) benign(0.224) TCGA-99-8025-01 11 36595131 36595131 G C RAG1 Missense_Mutation p.D93H 0.29 tolerated_low_confidence(0.13) possibly_damaging(0.502) TCGA-99-8025-01 11 45117336 45117336 C T PRDM11 5'UTR 0.19 TCGA-99-8025-01 11 4566869 4566869 C A OR52M1 Missense_Mutation p.S150Y 0.33 deleterious(0) possibly_damaging(0.516) TCGA-99-8025-01 11 4929447 4929447 C A OR51A7 Missense_Mutation p.P283Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-99-8025-01 11 5323154 5323154 C T OR51B4 Missense_Mutation p.G8D 0.27 tolerated(0.06) benign(0.002) TCGA-99-8025-01 11 55860968 55860969 TC A OR8I2 Frame_Shift_Del p.F62Yfs*2 0.18 TCGA-99-8025-01 11 56237475 56237475 A G OR5M3 Missense_Mutation p.C167R 0.27 deleterious(0) possibly_damaging(0.62) TCGA-99-8025-01 11 5878886 5878886 G A OR52E8 Missense_Mutation p.S16F 0.42 tolerated(0.21) benign(0.046) TCGA-99-8025-01 11 62296322 62296322 G C AHNAK Missense_Mutation p.S1856C 0.03 possibly_damaging(0.843) TCGA-99-8025-01 11 62298153 62298153 G C AHNAK Missense_Mutation p.Q1246E 0.02 benign(0.003) TCGA-99-8025-01 11 62677484 62677484 C A CHRM1 Silent p.A363A 0.37 TCGA-99-8025-01 11 64021900 64021900 G T PLCB3 Missense_Mutation p.R38L 0.16 tolerated(0.1) benign(0.006) TCGA-99-8025-01 11 64374723 64374723 G A NRXN2 Missense_Mutation p.A1695V 0.07 tolerated(0.25) benign(0.29) TCGA-99-8025-01 11 65267826 65267826 T C MALAT1 RNA 0.24 TCGA-99-8025-01 11 66190010 66190010 C G NPAS4 Missense_Mutation p.S139C 0.06 deleterious(0) probably_damaging(0.946) TCGA-99-8025-01 11 7092427 7092427 A T NLRP14 Missense_Mutation p.E1057V 0.39 deleterious(0.02) possibly_damaging(0.572) TCGA-99-8025-01 11 71155938 71155938 C G DHCR7 Missense_Mutation p.D21H 0.33 tolerated(0.09) benign(0.117) TCGA-99-8025-01 11 73372606 73372606 G A PLEKHB1 Missense_Mutation p.A231T 0.34 tolerated(0.07) probably_damaging(0.998) TCGA-99-8025-01 11 7647005 7647005 C T PPFIBP2 Intron 0.25 TCGA-99-8025-01 11 89403578 89403578 A T FOLH1B RNA 0.18 TCGA-99-8025-01 12 100796155 100796155 G T SLC17A8 Missense_Mutation p.L267F 0.06 tolerated(0.31) benign(0.077) TCGA-99-8025-01 12 102164787 102164787 C T GNPTAB Missense_Mutation p.S307N 0.03 tolerated(0.13) benign(0.347) TCGA-99-8025-01 12 106460807 106460807 C A NUAK1 Missense_Mutation p.D587Y 0.33 deleterious(0) possibly_damaging(0.855) TCGA-99-8025-01 12 107155217 107155217 C G RFX4 Missense_Mutation p.N735K 0.40 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-99-8025-01 12 113407457 113407457 A T OAS3 Missense_Mutation p.H1050L 0.57 tolerated(0.36) benign(0.008) TCGA-99-8025-01 12 113553590 113553590 C T RASAL1 Missense_Mutation p.D285N 0.21 tolerated(0.2) possibly_damaging(0.642) TCGA-99-8025-01 12 122091132 122091132 C G MORN3 Missense_Mutation p.R166T 0.09 tolerated(0.23) benign(0.21) TCGA-99-8025-01 12 122361648 122361648 G A WDR66 Missense_Mutation p.E167K 0.18 deleterious(0.04) benign(0.104) TCGA-99-8025-01 12 124337774 124337774 G A DNAH10 Missense_Mutation p.V1987I 0.15 probably_damaging(0.919) TCGA-99-8025-01 12 20787959 20787959 G T PDE3A Missense_Mutation p.S657I 0.25 tolerated(0.18) benign(0.017) TCGA-99-8025-01 12 25398282 25398282 C A KRAS Missense_Mutation p.G13C 0.56 deleterious(0.02) probably_damaging(0.997) TCGA-99-8025-01 12 4919345 4919345 T C KCNA6 Silent p.N46N 0.19 TCGA-99-8025-01 12 54577566 54577566 G A SMUG1 Silent p.I53I 0.28 TCGA-99-8025-01 12 55420429 55420432 GAAG AAA NEUROD4 Frame_Shift_Del p.R69Kfs*9 0.31 TCGA-99-8025-01 12 57396578 57396578 C G ZBTB39 Missense_Mutation p.K708N 0.26 tolerated(0.15) probably_damaging(0.991) TCGA-99-8025-01 12 65564629 65564629 C T LEMD3 Missense_Mutation p.A418V 0.45 tolerated(0.34) benign(0.05) TCGA-99-8025-01 12 75601680 75601680 G T KCNC2 Silent p.T28T 0.48 TCGA-99-8025-01 12 75601681 75601681 G T KCNC2 Missense_Mutation p.T28N 0.49 tolerated(0.14) probably_damaging(1) TCGA-99-8025-01 12 85695119 85695119 G T ALX1 Missense_Mutation p.D283Y 0.08 tolerated(0.67) possibly_damaging(0.819) TCGA-99-8025-01 12 96674563 96674563 G C CDK17 Intron 0.14 TCGA-99-8025-01 13 101714330 101714330 C G NALCN Missense_Mutation p.R1582P 0.57 deleterious(0) possibly_damaging(0.564) TCGA-99-8025-01 13 101714331 101714331 G T NALCN Missense_Mutation p.R1582S 0.58 deleterious(0) possibly_damaging(0.655) TCGA-99-8025-01 13 110826340 110826340 G A COL4A1 Missense_Mutation p.P1138S 0.20 probably_damaging(0.977) TCGA-99-8025-01 13 20346444 20346444 T C PSPC1 Silent p.A204A 0.27 TCGA-99-8025-01 13 39263980 39263980 C T FREM2 Silent p.L833L 0.23 TCGA-99-8025-01 13 39438657 39438657 G A FREM2 Missense_Mutation p.E2633K 0.57 tolerated(0.08) probably_damaging(0.994) TCGA-99-8025-01 13 48955415 48955415 G A RB1 Missense_Mutation p.D511N 0.18 tolerated(0.38) benign(0.006) TCGA-99-8025-01 13 60686168 60686168 G A DIAPH3 Silent p.L122L 0.20 TCGA-99-8025-01 14 100118878 100118878 C T HHIPL1 Silent p.N191N 0.11 TCGA-99-8025-01 14 20979193 20979193 C A RNASE10 Missense_Mutation p.P188H 0.22 deleterious(0) probably_damaging(1) TCGA-99-8025-01 14 22924282 22924282 C A TRDJ4 Missense_Mutation p.Q15K 0.05 unknown(0) TCGA-99-8025-01 14 35484003 35484003 G A SRP54 Missense_Mutation p.D314N 0.34 tolerated(0.22) benign(0.002) TCGA-99-8025-01 14 38724628 38724628 G A CLEC14A Silent p.S200S 0.07 TCGA-99-8025-01 14 52417477 52417477 G C GNG2 Missense_Mutation p.R27S 0.11 deleterious(0.01) possibly_damaging(0.697) TCGA-99-8025-01 14 64469506 64469506 A T SYNE2 Silent p.V1285V 0.45 TCGA-99-8025-01 14 64522939 64522939 C G SYNE2 Nonsense_Mutation p.S3341* 0.24 TCGA-99-8025-01 14 66208906 66208906 G A FUT8 Silent p.Q502Q 0.17 TCGA-99-8025-01 14 70477638 70477638 C T SMOC1 Missense_Mutation p.R278C 0.28 deleterious(0) probably_damaging(0.927) TCGA-99-8025-01 14 74531615 74531615 C G ALDH6A1 Silent p.V471V 0.08 TCGA-99-8025-01 14 75537426 75537426 G A ZC2HC1C Silent p.R50R 0.51 TCGA-99-8025-01 14 81744487 81744487 T C STON2 Missense_Mutation p.I390V 0.20 tolerated(0.07) benign(0.442) TCGA-99-8025-01 14 88729865 88729865 T A KCNK10 Missense_Mutation p.Q28L 0.11 tolerated_low_confidence(0.25) benign(0.014) TCGA-99-8025-01 14 93043770 93043770 G A RIN3 Silent p.L105L 0.30 TCGA-99-8025-01 15 22382770 22382770 C A OR4N4 Missense_Mutation p.Q100K 0.08 deleterious(0) probably_damaging(0.993) TCGA-99-8025-01 15 23811059 23811059 C G MKRN3 Missense_Mutation p.P44A 0.11 tolerated(0.52) benign(0) TCGA-99-8025-01 15 25463664 25463664 G A SNORD115-27 5'Flank 0.14 TCGA-99-8025-01 15 25605644 25605644 C A UBE3A Missense_Mutation p.D550Y 0.50 deleterious(0) probably_damaging(0.932) TCGA-99-8025-01 15 28465776 28465776 T A HERC2 Silent p.P1889P 0.21 TCGA-99-8025-01 15 41192082 41192083 - G VPS18 Frame_Shift_Ins p.D357Gfs*27 0.16 TCGA-99-8025-01 15 50782020 50782020 G A USP8 Missense_Mutation p.R638K 0.15 tolerated(0.14) possibly_damaging(0.867) TCGA-99-8025-01 15 53908228 53908228 C G WDR72 Silent p.L725L 0.24 TCGA-99-8025-01 15 65499281 65499281 C T CILP Missense_Mutation p.R88H 0.38 deleterious(0.04) benign(0.017) TCGA-99-8025-01 15 79058597 79058597 T G ADAMTS7 Missense_Mutation p.K1219T 0.26 tolerated(0.37) benign(0.05) TCGA-99-8025-01 15 79749740 79749740 A G KIAA1024 Silent p.P417P 0.63 TCGA-99-8025-01 16 17211518 17211518 G A XYLT1 Nonsense_Mutation p.Q848* 0.10 TCGA-99-8025-01 16 1836554 1836554 C T NUBP2 Silent p.A11A 0.35 TCGA-99-8025-01 16 1836555 1836555 G T NUBP2 Missense_Mutation p.G12C 0.36 deleterious(0.03) possibly_damaging(0.791) TCGA-99-8025-01 16 2153864 2153864 G A PKD1 Missense_Mutation p.R2732W 0.12 possibly_damaging(0.462) TCGA-99-8025-01 16 27078153 27078153 G T C16orf82 RNA 0.24 TCGA-99-8025-01 16 29825302 29825302 C T PRRT2 Intron 0.28 TCGA-99-8025-01 16 30976454 30976454 C T SETD1A Missense_Mutation p.S464F 0.37 benign(0.198) TCGA-99-8025-01 16 31391316 31391316 G C ITGAX Missense_Mutation p.R997P 0.15 tolerated(0.45) benign(0.286) TCGA-99-8025-01 16 5057443 5057443 G A SEC14L5 Missense_Mutation p.E510K 0.22 tolerated(0.13) benign(0.13) TCGA-99-8025-01 16 53532421 53532421 G A AKTIP Missense_Mutation p.P44S 0.10 deleterious(0.01) probably_damaging(1) TCGA-99-8025-01 16 55525751 55525751 C T MMP2 Missense_Mutation p.H407Y 0.10 deleterious(0.01) probably_damaging(1) TCGA-99-8025-01 16 56670820 56670820 A G MT1M 3'Flank 0.33 TCGA-99-8025-01 16 58001103 58001103 C G CNGB1 Missense_Mutation p.E30Q 0.16 tolerated_low_confidence(0.25) probably_damaging(0.968) TCGA-99-8025-01 16 65038634 65038634 C T CDH11 Missense_Mutation p.V47M 0.16 tolerated(0.13) benign(0.344) TCGA-99-8025-01 16 68330369 68330369 C G SLC7A6 Missense_Mutation p.Q408E 0.16 deleterious(0.02) possibly_damaging(0.595) TCGA-99-8025-01 16 72130817 72130817 G T DHX38 Silent p.R140R 0.24 TCGA-99-8025-01 16 76532467 76532467 C A CNTNAP4 Silent p.T674T 0.24 TCGA-99-8025-01 16 84213089 84213089 G A TAF1C Nonsense_Mutation p.Q690* 0.15 TCGA-99-8025-01 16 88907414 88907414 C A GALNS Missense_Mutation p.K136N 0.30 deleterious(0.04) probably_damaging(0.985) TCGA-99-8025-01 17 10403977 10403977 G - MYH1 Frame_Shift_Del p.T1278Qfs*18 0.24 TCGA-99-8025-01 17 16285380 16285380 C A UBB Silent p.G53G 0.10 TCGA-99-8025-01 17 21731312 21731312 C A UBBP4 Intron 0.64 TCGA-99-8025-01 17 21731313 21731313 G C UBBP4 Intron 0.64 TCGA-99-8025-01 17 26096596 26096596 C A NOS2 Silent p.S608S 0.50 TCGA-99-8025-01 17 31343042 31343042 G T ASIC2 Missense_Mutation p.L513I 0.21 tolerated(0.08) benign(0.315) TCGA-99-8025-01 17 32906102 32906102 G T C17orf102 Silent p.G66G 0.50 TCGA-99-8025-01 17 34235995 34235995 C G AC015849.16 RNA 0.14 TCGA-99-8025-01 17 34641582 34641582 G A CCL4L2 3'UTR 0.19 TCGA-99-8025-01 17 39084778 39084778 C A KRT23 Missense_Mutation p.V240F 0.48 deleterious(0) possibly_damaging(0.649) TCGA-99-8025-01 17 39334307 39334307 C A KRTAP4-2 Missense_Mutation p.R37L 0.15 deleterious(0.03) unknown(0) TCGA-99-8025-01 17 40948811 40948811 C A WNK4 3'UTR 0.54 TCGA-99-8025-01 17 40948812 40948812 C A WNK4 3'UTR 0.54 TCGA-99-8025-01 17 43037496 43037496 G T C1QL1 3'UTR 0.48 TCGA-99-8025-01 17 46847384 46847384 C - TTLL6 Frame_Shift_Del p.A706Lfs*2 0.31 TCGA-99-8025-01 17 47656254 47656254 C T NXPH3 Silent p.L117L 0.13 TCGA-99-8025-01 17 48148244 48148245 - AG ITGA3 Frame_Shift_Ins p.S235Dfs*23 0.15 TCGA-99-8025-01 17 57297869 57297869 G A GDPD1 5'UTR 0.20 TCGA-99-8025-01 17 57754355 57754355 G C CLTC Missense_Mutation p.E868Q 0.21 tolerated(0.21) probably_damaging(0.94) TCGA-99-8025-01 17 61914380 61914380 G A SMARCD2 Nonsense_Mutation p.Q157* 0.10 TCGA-99-8025-01 17 62050153 62050153 A T SCN4A Missense_Mutation p.L17M 0.12 deleterious(0) possibly_damaging(0.447) TCGA-99-8025-01 17 62145576 62145576 G A ERN1 Missense_Mutation p.S185L 0.12 tolerated(0.08) benign(0.055) TCGA-99-8025-01 17 68129281 68129281 C A KCNJ16 Silent p.L351L 0.43 TCGA-99-8025-01 17 73106670 73106670 G T ARMC7 Missense_Mutation p.E68D 0.44 tolerated(0.09) benign(0.199) TCGA-99-8025-01 17 74289038 74289038 C G QRICH2 Missense_Mutation p.L424F 0.08 tolerated(0.12) probably_damaging(0.961) TCGA-99-8025-01 17 7578413 7578413 C A TP53 Missense_Mutation p.V173L 0.39 deleterious(0) probably_damaging(0.998) TCGA-99-8025-01 17 78085838 78085838 C T GAA Missense_Mutation p.L565F 0.16 deleterious(0.02) possibly_damaging(0.519) TCGA-99-8025-01 17 79918634 79918634 C T NOTUM Missense_Mutation p.S51N 0.35 deleterious(0.01) possibly_damaging(0.679) TCGA-99-8025-01 17 80352343 80352343 C T OGFOD3 Silent p.A300A 0.24 TCGA-99-8025-01 17 80616388 80616388 G A RAB40B Missense_Mutation p.R182W 0.50 tolerated(0.14) benign(0) TCGA-99-8025-01 18 22805488 22805488 C T ZNF521 Silent p.L798L 0.15 TCGA-99-8025-01 18 32887376 32887376 C G ZNF271 RNA 0.31 TCGA-99-8025-01 18 42530538 42530538 G A SETBP1 Silent p.L411L 0.56 TCGA-99-8025-01 18 42530539 42530539 G T SETBP1 Missense_Mutation p.D412Y 0.58 tolerated(0.14) probably_damaging(0.974) TCGA-99-8025-01 18 59217334 59217334 C A CDH20 Missense_Mutation p.T591N 0.61 deleterious(0) probably_damaging(0.999) TCGA-99-8025-01 18 60237391 60237391 G C ZCCHC2 Missense_Mutation p.E634D 0.69 deleterious(0.02) probably_damaging(0.99) TCGA-99-8025-01 18 7231778 7231778 C A LRRC30 Missense_Mutation p.F214L 0.36 tolerated(1) benign(0.015) TCGA-99-8025-01 19 12542522 12542522 G A ZNF443 Missense_Mutation p.S155L 0.10 tolerated(0.27) possibly_damaging(0.731) TCGA-99-8025-01 19 13186447 13186447 G A NFIX Missense_Mutation p.S306N 0.14 tolerated(0.21) benign(0.258) TCGA-99-8025-01 19 14875264 14875264 G C EMR2 Missense_Mutation p.F355L 0.31 tolerated(0.12) benign(0.005) TCGA-99-8025-01 19 15483953 15483953 C G AKAP8 Silent p.R190R 0.22 TCGA-99-8025-01 19 15839237 15839237 C - OR10H2 Frame_Shift_Del p.L130Cfs*7 0.30 TCGA-99-8025-01 19 16025652 16025652 C T CYP4F11 Missense_Mutation p.R390Q 0.58 deleterious(0) probably_damaging(1) TCGA-99-8025-01 19 20229235 20229235 G A ZNF90 Missense_Mutation p.G291D 0.21 deleterious(0.04) possibly_damaging(0.865) TCGA-99-8025-01 19 22154571 22154571 C G ZNF208 Missense_Mutation p.E1089Q 0.13 deleterious(0.05) benign(0.378) TCGA-99-8025-01 19 23328682 23328682 C T ZNF730 Missense_Mutation p.T279I 0.19 deleterious(0.02) probably_damaging(0.991) TCGA-99-8025-01 19 24102822 24102822 G T ZNF726 Missense_Mutation p.C55F 0.25 tolerated(0.16) benign(0.056) TCGA-99-8025-01 19 24288789 24288789 G T ZNF254 Missense_Mutation p.E26D 0.26 deleterious(0) probably_damaging(1) TCGA-99-8025-01 19 31040235 31040235 G T ZNF536 Missense_Mutation p.G1237C 0.36 deleterious_low_confidence(0.02) benign(0.376) TCGA-99-8025-01 19 31048228 31048228 C A ZNF536 3'UTR 0.20 TCGA-99-8025-01 19 35842977 35842977 G T FFAR1 Missense_Mutation p.D175Y 0.10 deleterious(0.01) possibly_damaging(0.879) TCGA-99-8025-01 19 36018294 36018294 C A SBSN Missense_Mutation p.G297V 0.28 tolerated(0.27) probably_damaging(0.988) TCGA-99-8025-01 19 36133536 36133536 C T ETV2 Silent p.F30F 0.16 TCGA-99-8025-01 19 36297378 36297378 C T PRODH2 Missense_Mutation p.G395R 0.07 deleterious(0.01) possibly_damaging(0.624) TCGA-99-8025-01 19 36523157 36523157 G T CLIP3 Missense_Mutation p.Q35K 0.17 tolerated(0.79) benign(0.037) TCGA-99-8025-01 19 36728285 36728285 C T ZNF146 3'UTR 0.22 TCGA-99-8025-01 19 38024289 38024289 G T ZNF793 Silent p.P74P 0.18 TCGA-99-8025-01 19 39013725 39013725 C T RYR1 Silent p.G3439G 0.19 TCGA-99-8025-01 19 39038955 39038955 G T RYR1 Missense_Mutation p.K4059N 0.12 benign(0.001) TCGA-99-8025-01 19 39101717 39101717 G A MAP4K1 Nonsense_Mutation p.R262* 0.24 TCGA-99-8025-01 19 40368399 40368399 C A FCGBP Missense_Mutation p.D4317Y 0.11 benign(0.298) TCGA-99-8025-01 19 42125674 42125674 C A CEACAM4 3'UTR 0.15 TCGA-99-8025-01 19 42266103 42266103 G T CEACAM6 Missense_Mutation p.R310S 0.12 tolerated(0.41) benign(0.064) TCGA-99-8025-01 19 43268358 43268358 T G PSG8 Missense_Mutation p.E47A 0.31 deleterious(0.03) benign(0.089) TCGA-99-8025-01 19 43689096 43689096 T C PSG5 Missense_Mutation p.I90V 0.35 tolerated(0.27) benign(0.13) TCGA-99-8025-01 19 44536511 44536511 T A ZNF222 Silent p.P268P 0.11 TCGA-99-8025-01 19 44605359 44605359 C G ZNF224 Missense_Mutation p.I72M 0.13 deleterious(0.04) benign(0.004) TCGA-99-8025-01 19 44661342 44661342 G T ZNF234 Missense_Mutation p.Q391H 0.34 tolerated(0.11) probably_damaging(0.955) TCGA-99-8025-01 19 44661343 44661343 G T ZNF234 Nonsense_Mutation p.G392* 0.34 TCGA-99-8025-01 19 44932620 44932620 C T ZNF229 Missense_Mutation p.R779H 0.09 tolerated(0.35) possibly_damaging(0.498) TCGA-99-8025-01 19 48547208 48547208 C A CABP5 5'UTR 0.23 TCGA-99-8025-01 19 51330410 51330410 T C KLK15 Missense_Mutation p.R69G 0.25 tolerated(0.33) possibly_damaging(0.543) TCGA-99-8025-01 19 51480935 51480935 C T KLK7 Missense_Mutation p.G207R 0.10 deleterious(0) probably_damaging(0.999) TCGA-99-8025-01 19 52376621 52376621 G A ZNF577 Missense_Mutation p.H208Y 0.49 deleterious(0) probably_damaging(0.933) TCGA-99-8025-01 19 54848795 54848795 G A LILRA4 Silent p.S276S 0.41 TCGA-99-8025-01 19 55333044 55333044 C T KIR3DL1 Missense_Mutation p.S227L 0.15 tolerated(0.05) benign(0.139) TCGA-99-8025-01 19 55751199 55751199 C A PPP6R1 Missense_Mutation p.D520Y 0.61 deleterious(0.04) probably_damaging(0.999) TCGA-99-8025-01 19 56487517 56487517 G A NLRP8 Silent p.L908L 0.51 TCGA-99-8025-01 19 8381506 8381506 G C NDUFA7 Missense_Mutation p.P42R 0.53 deleterious(0) probably_damaging(0.995) TCGA-99-8025-01 19 9047702 9047702 G C MUC16 Missense_Mutation p.T11310S 0.06 possibly_damaging(0.682) TCGA-99-8025-01 1 100588800 100588800 A G SASS6 Missense_Mutation p.Y58H 0.45 deleterious(0) probably_damaging(0.994) TCGA-99-8025-01 1 103468337 103468337 C A COL11A1 Missense_Mutation p.G670V 0.33 unknown(0) TCGA-99-8025-01 1 104114336 104114336 G A AMY2B Missense_Mutation p.D38N 0.07 deleterious(0.01) probably_damaging(1) TCGA-99-8025-01 1 108116693 108116693 C A VAV3 Missense_Mutation p.W826C 0.33 deleterious(0) probably_damaging(1) TCGA-99-8025-01 1 110050664 110050664 C T AMIGO1 Missense_Mutation p.D291N 0.27 deleterious(0) probably_damaging(1) TCGA-99-8025-01 1 110561707 110561707 C T AHCYL1 Missense_Mutation p.P451L 0.44 deleterious(0) probably_damaging(0.993) TCGA-99-8025-01 1 114498234 114498234 G T HIPK1 Missense_Mutation p.R457L 0.13 deleterious(0) probably_damaging(1) TCGA-99-8025-01 1 114508854 114508854 C G HIPK1 Missense_Mutation p.P781A 0.10 tolerated(0.1) benign(0.05) TCGA-99-8025-01 1 120056650 120056650 G A HSD3B1 Silent p.A168A 0.10 TCGA-99-8025-01 1 151149328 151149328 T C VPS72 Missense_Mutation p.H307R 0.46 tolerated(0.63) benign(0.241) TCGA-99-8025-01 1 152060528 152060528 C G TCHHL1 Missense_Mutation p.R31T 0.21 tolerated(0.19) benign(0.237) TCGA-99-8025-01 1 152325242 152325242 G T FLG2 Missense_Mutation p.H1674N 0.27 probably_damaging(0.988) TCGA-99-8025-01 1 153177254 153177254 A T LELP1 Missense_Mutation p.E24V 0.16 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-99-8025-01 1 153784275 153784275 C A GATAD2B Missense_Mutation p.R527L 0.31 deleterious(0) possibly_damaging(0.862) TCGA-99-8025-01 1 155307419 155307419 C T ASH1L 3'UTR 0.07 TCGA-99-8025-01 1 156616868 156616868 G C BCAN Missense_Mutation p.A123P 0.48 tolerated(0.23) possibly_damaging(0.664) TCGA-99-8025-01 1 156703283 156703283 C G RRNAD1 Missense_Mutation p.L203V 0.13 tolerated(0.1) benign(0.444) TCGA-99-8025-01 1 158670347 158670347 G C OR6K2 Silent p.L32L 0.19 TCGA-99-8025-01 1 158687243 158687243 G T OR6K3 Silent p.V221V 0.43 TCGA-99-8025-01 1 159163693 159163693 G T CADM3 Missense_Mutation p.G219V 0.08 deleterious(0) possibly_damaging(0.888) TCGA-99-8025-01 1 163317551 163317551 A G NUF2 Splice_Site p.X317_splice 0.22 TCGA-99-8025-01 1 166927196 166927196 C A ILDR2 Missense_Mutation p.Q63H 0.26 tolerated(0.08) probably_damaging(0.962) TCGA-99-8025-01 1 168073831 168073831 C T GPR161 Silent p.T106T 0.04 TCGA-99-8025-01 1 16895660 16895660 A G NBPF1 Missense_Mutation p.I841T 0.08 tolerated(0.26) possibly_damaging(0.652) TCGA-99-8025-01 1 169510906 169510906 G T F5 Missense_Mutation p.T1141N 0.32 deleterious_low_confidence(0.02) possibly_damaging(0.726) TCGA-99-8025-01 1 172634827 172634827 G C FASLG Missense_Mutation p.G173R 0.47 deleterious(0) probably_damaging(0.999) TCGA-99-8025-01 1 175375900 175375900 G A TNR 5'UTR 0.29 TCGA-99-8025-01 1 176564387 176564387 G T PAPPA2 Silent p.L549L 0.20 TCGA-99-8025-01 1 176853496 176853496 C G ASTN1 Missense_Mutation p.D1069H 0.06 deleterious(0) probably_damaging(0.996) TCGA-99-8025-01 1 180853169 180853169 G T XPR1 Missense_Mutation p.L686F 0.17 tolerated_low_confidence(0.1) possibly_damaging(0.798) TCGA-99-8025-01 1 180913640 180913640 G A KIAA1614 Missense_Mutation p.S1092N 0.22 tolerated(0.15) benign(0.015) TCGA-99-8025-01 1 182554744 182554744 G T RNASEL Missense_Mutation p.R400S 0.26 tolerated(0.31) possibly_damaging(0.672) TCGA-99-8025-01 1 190067632 190067632 T A BRINP3 Missense_Mutation p.Q606L 0.04 deleterious(0) benign(0.15) TCGA-99-8025-01 1 192998517 192998517 C - UCHL5 Splice_Site p.X145_splice 0.08 TCGA-99-8025-01 1 20141127 20141127 G C RNF186 Silent p.A156A 0.33 TCGA-99-8025-01 1 20220953 20220953 C - OTUD3 Frame_Shift_Del p.N156Mfs*15 0.08 TCGA-99-8025-01 1 203316693 203316693 G T FMOD Silent p.R236R 0.27 TCGA-99-8025-01 1 205031034 205031034 G A CNTN2 Missense_Mutation p.D339N 0.15 deleterious(0.02) benign(0.098) TCGA-99-8025-01 1 207790112 207790112 G T CR1 Missense_Mutation p.S2285I 0.51 tolerated(0.05) possibly_damaging(0.904) TCGA-99-8025-01 1 21013919 21013919 C T KIF17 Missense_Mutation p.D634N 0.12 deleterious_low_confidence(0.01) benign(0.357) TCGA-99-8025-01 1 21071536 21071536 C G HP1BP3 Silent p.V472V 0.11 TCGA-99-8025-01 1 214818844 214818844 G T CENPF Silent p.L1977L 0.16 TCGA-99-8025-01 1 214818845 214818845 G T CENPF Missense_Mutation p.D1978Y 0.16 possibly_damaging(0.824) TCGA-99-8025-01 1 215931936 215931936 C A USH2A Splice_Site p.X3797_splice 0.45 TCGA-99-8025-01 1 216073486 216073486 G A USH2A Missense_Mutation p.R2509W 0.16 possibly_damaging(0.693) TCGA-99-8025-01 1 216258221 216258221 T C USH2A Splice_Site p.X1663_splice 0.17 TCGA-99-8025-01 1 21808122 21808122 C A NBPF3 Missense_Mutation p.P489H 0.12 tolerated(0.13) possibly_damaging(0.677) TCGA-99-8025-01 1 221879729 221879729 C A DUSP10 Silent p.G297G 0.55 TCGA-99-8025-01 1 223567450 223567450 G A C1orf65 Silent p.K211K 0.17 TCGA-99-8025-01 1 225700578 225700578 G A ENAH Silent p.A453A 0.29 TCGA-99-8025-01 1 237829816 237829816 C T RYR2 Missense_Mutation p.S2814F 0.19 possibly_damaging(0.473) TCGA-99-8025-01 1 238045785 238045785 G T ZP4 Silent p.A520A 0.56 TCGA-99-8025-01 1 238048537 238048537 G T ZP4 Missense_Mutation p.H413Q 0.46 deleterious(0) probably_damaging(0.991) TCGA-99-8025-01 1 23836326 23836326 G C E2F2 3'UTR 0.29 TCGA-99-8025-01 1 247588839 247588839 C A NLRP3 Silent p.G698G 0.48 TCGA-99-8025-01 1 247836135 247836135 C A OR13G1 Missense_Mutation p.C70F 0.45 deleterious(0) possibly_damaging(0.853) TCGA-99-8025-01 1 247921309 247921309 C A OR1C1 Missense_Mutation p.A134S 0.51 tolerated(0.15) benign(0.001) TCGA-99-8025-01 1 248525460 248525460 C A OR2T4 Missense_Mutation p.P193H 0.46 deleterious(0) probably_damaging(0.954) TCGA-99-8025-01 1 248525658 248525658 G T OR2T4 Missense_Mutation p.G259V 0.53 deleterious(0.01) benign(0.009) TCGA-99-8025-01 1 25617229 25617229 G A RHD Missense_Mutation p.V145M 0.32 tolerated(0.16) benign(0.392) TCGA-99-8025-01 1 26586131 26586131 C G CEP85 Missense_Mutation p.F393L 0.07 deleterious(0.03) probably_damaging(0.999) TCGA-99-8025-01 1 26607302 26607302 G A SH3BGRL3 Missense_Mutation p.R32H 0.13 tolerated(0.24) benign(0.004) TCGA-99-8025-01 1 27087346 27087346 G A ARID1A Splice_Site p.X641_splice 0.22 TCGA-99-8025-01 1 27087936 27087936 G A ARID1A Missense_Mutation p.M741I 0.14 unknown(0) TCGA-99-8025-01 1 27101217 27101217 G T ARID1A Missense_Mutation p.G1500V 0.19 unknown(0) TCGA-99-8025-01 1 33585632 33585632 C G ADC Intron 0.19 TCGA-99-8025-01 1 3669225 3669225 C T CCDC27 Silent p.S60S 0.27 TCGA-99-8025-01 1 38049482 38049482 C A GNL2 Missense_Mutation p.G208C 0.08 deleterious(0) probably_damaging(0.984) TCGA-99-8025-01 1 38227278 38227278 C A EPHA10 Missense_Mutation p.G217C 0.21 deleterious(0) probably_damaging(0.961) TCGA-99-8025-01 1 39988106 39988106 C G BMP8A Silent p.V300V 0.10 TCGA-99-8025-01 1 40723960 40723960 C T ZMPSTE24 Missense_Mutation p.S6L 0.26 tolerated_low_confidence(0.13) benign(0.001) TCGA-99-8025-01 1 41012466 41012466 C T ZNF684 Silent p.N157N 0.14 TCGA-99-8025-01 1 43124140 43124140 C T PPIH Missense_Mutation p.P8L 0.20 deleterious(0) benign(0.045) TCGA-99-8025-01 1 52299742 52299742 G A NRD1 Silent p.R339R 0.20 TCGA-99-8025-01 1 55138821 55138821 G A MROH7 Missense_Mutation p.E553K 0.21 tolerated(0.29) benign(0.037) TCGA-99-8025-01 1 57171767 57171767 A G PRKAA2 Silent p.V432V 0.39 TCGA-99-8025-01 1 6196583 6196583 C A CHD5 Missense_Mutation p.R897M 0.19 deleterious(0) probably_damaging(0.992) TCGA-99-8025-01 1 65349142 65349142 T C JAK1 Missense_Mutation p.E8G 0.05 deleterious_low_confidence(0.01) benign(0.307) TCGA-99-8025-01 1 70488821 70488821 C A LRRC7 Missense_Mutation p.Q482K 0.32 tolerated(0.89) benign(0) TCGA-99-8025-01 1 74929197 74929197 C A TNNI3K Nonsense_Mutation p.S796* 0.07 TCGA-99-8025-01 1 76269445 76269445 G C MSH4 Missense_Mutation p.A92P 0.40 tolerated_low_confidence(0.13) benign(0.386) TCGA-99-8025-01 1 86939560 86939560 G T CLCA1 Splice_Site p.X151_splice 0.32 TCGA-99-8025-01 1 92185023 92185023 T A TGFBR3 Splice_Site p.X472_splice 0.11 TCGA-99-8025-01 1 97839190 97839190 G A DPYD Missense_Mutation p.A662V 0.29 tolerated(0.23) possibly_damaging(0.653) TCGA-99-8025-01 20 10632894 10632894 G A JAG1 Silent p.L297L 0.17 TCGA-99-8025-01 20 17208121 17208121 C T PCSK2 Silent p.V57V 0.41 TCGA-99-8025-01 20 23432523 23432523 T A CST11 Missense_Mutation p.E88V 0.20 deleterious(0) probably_damaging(0.998) TCGA-99-8025-01 20 30432421 30432421 C T FOXS1 Missense_Mutation p.G309S 0.13 tolerated(0.08) benign(0.065) TCGA-99-8025-01 20 30584967 30584967 G A XKR7 Missense_Mutation p.E483K 0.11 deleterious(0.03) possibly_damaging(0.831) TCGA-99-8025-01 20 33337969 33337969 T G NCOA6 Missense_Mutation p.M677L 0.09 possibly_damaging(0.504) TCGA-99-8025-01 20 3869917 3869917 C G PANK2 Missense_Mutation p.P57R 0.25 deleterious_low_confidence(0.01) benign(0) TCGA-99-8025-01 20 40117113 40117113 C G CHD6 Missense_Mutation p.K604N 0.28 deleterious(0) probably_damaging(1) TCGA-99-8025-01 20 46255824 46255824 C T NCOA3 Nonsense_Mutation p.Q146* 0.22 TCGA-99-8025-01 20 49510647 49510647 C T ADNP Missense_Mutation p.E202K 0.15 deleterious(0.01) benign(0.113) TCGA-99-8025-01 20 49571794 49571794 C T DPM1 Missense_Mutation p.D64N 0.25 deleterious(0) probably_damaging(0.998) TCGA-99-8025-01 20 50329530 50329530 C A ATP9A Missense_Mutation p.Q137H 0.19 deleterious(0) possibly_damaging(0.828) TCGA-99-8025-01 20 54579040 54579040 G T CBLN4 Nonsense_Mutation p.S63* 0.22 TCGA-99-8025-01 20 56138115 56138115 G A PCK1 Silent p.P214P 0.37 TCGA-99-8025-01 20 57561856 57561856 C G NELFCD Missense_Mutation p.S93C 0.20 deleterious(0) probably_damaging(0.995) TCGA-99-8025-01 20 60887534 60887534 G C LAMA5 Missense_Mutation p.I3094M 0.10 benign(0.19) TCGA-99-8025-01 20 62714779 62714779 C G C20orf201 Missense_Mutation p.E228Q 0.18 tolerated_low_confidence(0.79) benign(0) TCGA-99-8025-01 21 19635105 19635105 T C CHODL Intron 0.38 TCGA-99-8025-01 21 31654667 31654667 G T KRTAP24-1 Missense_Mutation p.S195Y 0.15 tolerated(0.09) benign(0.189) TCGA-99-8025-01 21 31913956 31913956 T C KRTAP19-6 3'UTR 0.21 TCGA-99-8025-01 21 32253447 32253447 G T KRTAP11-1 Missense_Mutation p.P133T 0.59 deleterious(0) benign(0.34) TCGA-99-8025-01 21 37618238 37618238 G C DOPEY2 Silent p.L1320L 0.27 TCGA-99-8025-01 21 45711020 45711020 C G AIRE Missense_Mutation p.L308V 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-99-8025-01 22 16449670 16449670 G T OR11H1 Silent p.L45L 0.23 TCGA-99-8025-01 22 18301083 18301083 C T MICAL3 Silent p.S1448S 0.44 TCGA-99-8025-01 22 20937171 20937171 C T MED15 Missense_Mutation p.S485L 0.08 deleterious(0) unknown(0) TCGA-99-8025-01 22 21119900 21119900 G C PI4KA Missense_Mutation p.L804V 0.11 tolerated(1) benign(0.001) TCGA-99-8025-01 22 21385925 21385925 T A SLC7A4 Silent p.T59T 0.14 TCGA-99-8025-01 22 22869399 22869399 C A ZNF280A Nonsense_Mutation p.G186* 0.10 TCGA-99-8025-01 22 29446408 29446408 G C ZNRF3 Missense_Mutation p.G747R 0.51 tolerated_low_confidence(0.09) benign(0.365) TCGA-99-8025-01 22 31663872 31663872 G A LIMK2 Silent p.L392L 0.11 TCGA-99-8025-01 22 37333880 37333880 C A CSF2RB Missense_Mutation p.P677H 0.55 deleterious(0.03) possibly_damaging(0.907) TCGA-99-8025-01 22 38119561 38119561 C T TRIOBP Missense_Mutation p.S333L 0.14 deleterious_low_confidence(0.01) benign(0.038) TCGA-99-8025-01 22 38322036 38322036 G C MICALL1 Missense_Mutation p.S484T 0.38 tolerated(0.05) possibly_damaging(0.556) TCGA-99-8025-01 2 102958727 102958727 C A IL1RL1 Missense_Mutation p.Q219K 0.18 tolerated(0.31) benign(0.063) TCGA-99-8025-01 2 103335115 103335115 C G MFSD9 Missense_Mutation p.D397H 0.31 deleterious(0.03) possibly_damaging(0.622) TCGA-99-8025-01 2 103335116 103335116 C A MFSD9 Silent p.T396T 0.29 TCGA-99-8025-01 2 107049662 107049662 G C RGPD3 Missense_Mutation p.P762R 0.06 tolerated(0.09) benign(0.221) TCGA-99-8025-01 2 107423138 107423138 G T ST6GAL2 Missense_Mutation p.S529Y 0.16 probably_damaging(0.979) TCGA-99-8025-01 2 1241750 1241750 G T SNTG2 Silent p.R270R 0.37 TCGA-99-8025-01 2 130897173 130897173 C A CCDC74B Missense_Mutation p.R366S 0.21 deleterious(0) possibly_damaging(0.819) TCGA-99-8025-01 2 133403254 133403254 C G LYPD1 3'UTR 0.29 TCGA-99-8025-01 2 138033516 138033516 C A THSD7B Missense_Mutation p.P807H 0.30 tolerated(0.22) probably_damaging(0.95) TCGA-99-8025-01 2 141027818 141027818 C A LRP1B Missense_Mutation p.V4414L 0.26 benign(0) TCGA-99-8025-01 2 141945996 141945996 A G LRP1B Missense_Mutation p.I336T 0.21 benign(0.152) TCGA-99-8025-01 2 155098653 155098653 G A GALNT13 Missense_Mutation p.R141H 0.22 deleterious(0) benign(0.414) TCGA-99-8025-01 2 155099275 155099275 G C GALNT13 Missense_Mutation p.R181S 0.20 deleterious(0) probably_damaging(0.909) TCGA-99-8025-01 2 157439371 157439371 G A GPD2 Missense_Mutation p.E709K 0.16 tolerated(0.09) benign(0.013) TCGA-99-8025-01 2 162036256 162036256 A C TANK Missense_Mutation p.K28T 0.26 deleterious(0.02) possibly_damaging(0.752) TCGA-99-8025-01 2 163130423 163130423 C T IFIH1 Missense_Mutation p.R779H 0.12 tolerated(0.13) possibly_damaging(0.614) TCGA-99-8025-01 2 1652879 1652879 C T PXDN Silent p.S891S 0.23 TCGA-99-8025-01 2 166896071 166896071 C T SCN1A Silent p.L817L 0.25 TCGA-99-8025-01 2 167262609 167262609 C A SCN7A Missense_Mutation p.L1510F 0.33 deleterious(0) probably_damaging(0.999) TCGA-99-8025-01 2 168074719 168074719 C T XIRP2 Missense_Mutation p.A256V 0.31 probably_damaging(0.999) TCGA-99-8025-01 2 179526515 179526515 G - TTN Frame_Shift_Del p.P12419Lfs*528 0.11 TCGA-99-8025-01 2 182386949 182386949 G T ITGA4 Missense_Mutation p.G652W 0.32 deleterious(0) probably_damaging(1) TCGA-99-8025-01 2 183593357 183593357 G T DNAJC10 Missense_Mutation p.C158F 0.18 deleterious(0) probably_damaging(1) TCGA-99-8025-01 2 18765488 18765488 A T NT5C1B Missense_Mutation p.S313T 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-99-8025-01 2 198266713 198266713 C A SF3B1 Missense_Mutation p.G740V 0.25 deleterious(0) probably_damaging(0.984) TCGA-99-8025-01 2 203745650 203745650 C A WDR12 Missense_Mutation p.S402I 0.43 deleterious(0) probably_damaging(0.98) TCGA-99-8025-01 2 207310034 207310034 C T ADAM23 Missense_Mutation p.P73L 0.10 tolerated_low_confidence(0.32) benign(0) TCGA-99-8025-01 2 214239765 214239765 A T SPAG16 Silent p.P288P 0.25 TCGA-99-8025-01 2 215919300 215919300 G T ABCA12 Missense_Mutation p.L136I 0.23 tolerated(0.1) benign(0.028) TCGA-99-8025-01 2 216257767 216257767 G A FN1 Missense_Mutation p.S1319L 0.23 deleterious(0) benign(0.407) TCGA-99-8025-01 2 219892501 219892501 G A CCDC108 Silent p.C694C 0.37 TCGA-99-8025-01 2 220147594 220147594 G T DNAJB2 Missense_Mutation p.G130C 0.30 deleterious(0.03) possibly_damaging(0.56) TCGA-99-8025-01 2 220348085 220348085 C A SPEG Missense_Mutation p.A1967D 0.21 benign(0.001) TCGA-99-8025-01 2 220399980 220399980 G - ASIC4 Frame_Shift_Del p.I497Sfs*28 0.28 TCGA-99-8025-01 2 223066087 223066087 C A PAX3 Intron 0.17 TCGA-99-8025-01 2 228137827 228137827 G A COL4A3 Missense_Mutation p.E641K 0.10 unknown(0) TCGA-99-8025-01 2 231774763 231774763 G A GPR55 Silent p.S305S 0.23 TCGA-99-8025-01 2 239040124 239040124 A C ESPNL Missense_Mutation p.K923N 0.39 deleterious(0) probably_damaging(0.996) TCGA-99-8025-01 2 240036884 240036884 C G HDAC4 Missense_Mutation p.Q547H 0.08 tolerated(0.14) benign(0.002) TCGA-99-8025-01 2 241569725 241569725 G T GPR35 Missense_Mutation p.R150L 0.23 deleterious(0.01) possibly_damaging(0.533) TCGA-99-8025-01 2 26531895 26531895 C T GPR113 3'Flank 0.18 TCGA-99-8025-01 2 27355223 27355223 C G PREB Silent p.V267V 0.15 TCGA-99-8025-01 2 27445767 27445767 G T CAD Missense_Mutation p.G224V 0.11 deleterious(0.01) probably_damaging(1) TCGA-99-8025-01 2 31165067 31165067 C A GALNT14 Nonsense_Mutation p.E316* 0.37 TCGA-99-8025-01 2 51253541 51253541 C A NRXN1 Missense_Mutation p.C280F 0.28 tolerated(0.13) benign(0.003) TCGA-99-8025-01 2 54482054 54482054 G A TSPYL6 3'UTR 0.25 TCGA-99-8025-01 2 66667693 66667693 G T MEIS1 Splice_Site p.X128_splice 0.12 TCGA-99-8025-01 2 69092786 69092786 C T BMP10 Missense_Mutation p.V418I 0.26 deleterious(0) probably_damaging(0.999) TCGA-99-8025-01 2 75116483 75116483 G T HK2 Silent p.R829R 0.30 TCGA-99-8025-01 2 79384295 79384295 G A REG3A 3'UTR 0.29 TCGA-99-8025-01 2 86352636 86352636 A C PTCD3 Missense_Mutation p.H288P 0.28 tolerated(0.06) benign(0.001) TCGA-99-8025-01 2 88485432 88485432 C G THNSL2 Missense_Mutation p.C415W 0.20 deleterious(0) probably_damaging(0.971) TCGA-99-8025-01 2 89513109 89513109 G TT IGKV1-27 Frame_Shift_Ins p.I51Nfs*2 0.17 TCGA-99-8025-01 2 89513177 89513177 G C IGKV1-27 Missense_Mutation p.Q28E 0.16 deleterious(0) possibly_damaging(0.898) TCGA-99-8025-01 2 97529498 97529498 C A SEMA4C Missense_Mutation p.G455V 0.32 deleterious(0.01) probably_damaging(0.979) TCGA-99-8025-01 2 97757441 97757441 C A FAHD2B Translation_Start_Site p.M1? 0.16 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-99-8025-01 3 121641106 121641106 C G SLC15A2 Missense_Mutation p.P246R 0.48 deleterious(0.03) probably_damaging(0.98) TCGA-99-8025-01 3 124351379 124351379 C A KALRN Silent p.S66S 0.10 TCGA-99-8025-01 3 134322417 134322417 G A KY 3'UTR 0.40 TCGA-99-8025-01 3 138739311 138739311 C A PRR23B Missense_Mutation p.A65S 0.67 tolerated(0.09) possibly_damaging(0.539) TCGA-99-8025-01 3 14190340 14190340 G C XPC Missense_Mutation p.Q742E 0.19 deleterious(0.05) possibly_damaging(0.841) TCGA-99-8025-01 3 14768452 14768452 G C C3orf20 Missense_Mutation p.M537I 0.39 tolerated(0.25) benign(0.023) TCGA-99-8025-01 3 151598718 151598718 A T SUCNR1 Silent p.R129R 0.59 TCGA-99-8025-01 3 164907502 164907502 A C SLITRK3 Missense_Mutation p.C373G 0.03 deleterious(0) possibly_damaging(0.786) TCGA-99-8025-01 3 193048962 193048962 G A ATP13A5 Missense_Mutation p.P471S 0.42 deleterious(0) probably_damaging(1) TCGA-99-8025-01 3 38035437 38035437 G C VILL Missense_Mutation p.E37Q 0.44 deleterious(0.02) possibly_damaging(0.812) TCGA-99-8025-01 3 38407197 38407197 C T XYLB Silent p.L159L 0.41 TCGA-99-8025-01 3 38592690 38592690 G T SCN5A Missense_Mutation p.P1725T 0.55 deleterious(0) probably_damaging(0.999) TCGA-99-8025-01 3 38770310 38770310 C T SCN10A Missense_Mutation p.G788E 0.62 deleterious(0) probably_damaging(0.986) TCGA-99-8025-01 3 39229640 39229640 C T XIRP1 Missense_Mutation p.E433K 0.37 tolerated(0.87) benign(0.033) TCGA-99-8025-01 3 42730389 42730389 G A KLHL40 Missense_Mutation p.D484N 0.12 tolerated(1) benign(0.006) TCGA-99-8025-01 3 51101982 51101982 G A DOCK3 Missense_Mutation p.R140Q 0.33 tolerated(0.1) benign(0.12) TCGA-99-8025-01 3 71008398 71008398 T A FOXP1 Nonstop_Mutation p.*680Cext*? 0.57 TCGA-99-8025-01 3 74344381 74344381 G C CNTN3 Missense_Mutation p.T803R 0.63 tolerated(0.2) benign(0.177) TCGA-99-8025-01 3 89259174 89259174 C A EPHA3 Nonsense_Mutation p.C106* 0.10 TCGA-99-8025-01 4 113353582 113353582 C T ALPK1 Missense_Mutation p.S960L 0.15 tolerated(0.5) benign(0.033) TCGA-99-8025-01 4 113508556 113508556 T A C4orf21 Missense_Mutation p.Q1219H 0.37 tolerated(0.05) benign(0.037) TCGA-99-8025-01 4 123202794 123202794 C T KIAA1109 Missense_Mutation p.P2968S 0.28 benign(0.242) TCGA-99-8025-01 4 144387343 144387343 G T GAB1 Missense_Mutation p.D661Y 0.31 deleterious(0) probably_damaging(0.995) TCGA-99-8025-01 4 144387344 144387344 A T GAB1 Missense_Mutation p.D661V 0.31 deleterious(0) probably_damaging(0.969) TCGA-99-8025-01 4 147860996 147860996 C G TTC29 Missense_Mutation p.A18P 0.12 tolerated(0.23) benign(0.247) TCGA-99-8025-01 4 153897015 153897015 G T FHDC1 Missense_Mutation p.D858Y 0.11 deleterious(0) probably_damaging(0.959) TCGA-99-8025-01 4 155237036 155237036 C A DCHS2 Missense_Mutation p.Q1253H 0.38 deleterious(0) probably_damaging(1) TCGA-99-8025-01 4 166978456 166978456 G T TLL1 Missense_Mutation p.C614F 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-99-8025-01 4 187521113 187521113 C G FAT1 Silent p.T4014T 0.23 TCGA-99-8025-01 4 189068190 189068190 C A TRIML1 Silent p.I357I 0.18 TCGA-99-8025-01 4 38798906 38798906 A T TLR1 Missense_Mutation p.M516K 0.30 deleterious(0) benign(0.024) TCGA-99-8025-01 4 52928395 52928395 G A SPATA18 Missense_Mutation p.D107N 0.12 deleterious(0.04) probably_damaging(0.981) TCGA-99-8025-01 4 57204688 57204688 A G AASDH Silent p.S1059S 0.18 TCGA-99-8025-01 4 6064133 6064133 C A JAKMIP1 Missense_Mutation p.C489F 0.23 deleterious(0.02) possibly_damaging(0.739) TCGA-99-8025-01 4 62758546 62758546 C A LPHN3 Missense_Mutation p.H483Q 0.21 tolerated(0.64) benign(0.002) TCGA-99-8025-01 4 69342086 69342086 G A TMPRSS11E Missense_Mutation p.G213R 0.28 deleterious(0) probably_damaging(0.992) TCGA-99-8025-01 4 70896453 70896453 C A HTN3 5'UTR 0.08 TCGA-99-8025-01 4 74477493 74477493 T C RASSF6 Missense_Mutation p.Q39R 0.35 deleterious(0.05) benign(0.004) TCGA-99-8025-01 4 77303824 77303824 C G CCDC158 Missense_Mutation p.E285Q 0.15 deleterious(0.03) benign(0.328) TCGA-99-8025-01 4 79238637 79238637 C G FRAS1 Missense_Mutation p.F645L 0.15 benign(0.011) TCGA-99-8025-01 4 86992 86992 A T Z95704.2 RNA 0.19 TCGA-99-8025-01 5 10239436 10239436 G C FAM173B Missense_Mutation p.Q17E 0.18 tolerated(0.29) benign(0.003) TCGA-99-8025-01 5 109155568 109155568 G T MAN2A1 Missense_Mutation p.D770Y 0.12 deleterious(0.03) possibly_damaging(0.744) TCGA-99-8025-01 5 110409104 110409104 G A TSLP Intron 0.13 TCGA-99-8025-01 5 128359383 128359383 G T SLC27A6 Missense_Mutation p.W412L 0.17 tolerated(0.58) benign(0.023) TCGA-99-8025-01 5 131008371 131008371 T C FNIP1 Missense_Mutation p.H589R 0.18 tolerated(0.17) probably_damaging(0.996) TCGA-99-8025-01 5 131396520 131396520 G A IL3 Missense_Mutation p.E41K 0.38 deleterious(0) possibly_damaging(0.57) TCGA-99-8025-01 5 134074341 134074341 G A CAMLG Missense_Mutation p.G11R 0.23 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-99-8025-01 5 140208358 140208358 C A PCDHA6 Missense_Mutation p.L228M 0.19 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-99-8025-01 5 140475054 140475054 C A PCDHB2 Missense_Mutation p.T227K 0.12 deleterious_low_confidence(0) benign(0.383) TCGA-99-8025-01 5 140615935 140615935 G T PCDHB18 RNA 0.18 TCGA-99-8025-01 5 140724253 140724253 G A PCDHGA3 Missense_Mutation p.G218D 0.12 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-99-8025-01 5 150924836 150924836 G T FAT2 Missense_Mutation p.T1951N 0.38 benign(0.175) TCGA-99-8025-01 5 156390223 156390223 C A TIMD4 5'UTR 0.41 TCGA-99-8025-01 5 156916128 156916128 C T ADAM19 Silent p.T769T 0.24 TCGA-99-8025-01 5 1589349 1589349 T C SDHAP3 RNA 0.16 TCGA-99-8025-01 5 1589382 1589382 G C SDHAP3 RNA 0.15 TCGA-99-8025-01 5 179306763 179306763 C A TBC1D9B Silent p.S427S 0.41 TCGA-99-8025-01 5 32712513 32712513 C T NPR3 Missense_Mutation p.R211W 0.34 deleterious(0) probably_damaging(1) TCGA-99-8025-01 5 33938059 33938059 G T RXFP3 Missense_Mutation p.W405L 0.22 tolerated(0.23) benign(0.001) TCGA-99-8025-01 5 33938270 33938270 C A RXFP3 3'UTR 0.37 TCGA-99-8025-01 5 39392557 39392557 C A DAB2 Silent p.A80A 0.45 TCGA-99-8025-01 5 42807080 42807080 G A SEPP1 Missense_Mutation p.P112S 0.16 tolerated(0.19) probably_damaging(0.961) TCGA-99-8025-01 5 5464791 5464791 G C KIAA0947 Missense_Mutation p.D1782H 0.19 deleterious(0) probably_damaging(0.984) TCGA-99-8025-01 5 55412516 55412516 A T ANKRD55 Missense_Mutation p.N297K 0.41 tolerated(0.07) benign(0.086) TCGA-99-8025-01 5 56242801 56242801 C T MIER3 Missense_Mutation p.M44I 0.10 tolerated(0.18) benign(0.018) TCGA-99-8025-01 5 57753390 57753390 T A PLK2 Missense_Mutation p.N245I 0.24 deleterious(0) probably_damaging(0.997) TCGA-99-8025-01 5 92921039 92921039 G A NR2F1 Missense_Mutation p.E104K 0.29 deleterious(0) probably_damaging(0.945) TCGA-99-8025-01 5 96073554 96073554 C T CAST Missense_Mutation p.S193L 0.23 deleterious(0.03) benign(0.065) TCGA-99-8025-01 5 96332192 96332192 C G LNPEP Missense_Mutation p.F502L 0.19 tolerated(0.14) possibly_damaging(0.534) TCGA-99-8025-01 6 100369084 100369084 A G MCHR2 Missense_Mutation p.M252T 0.11 tolerated(0.57) benign(0.013) TCGA-99-8025-01 6 101090536 101090536 A T ASCC3 Missense_Mutation p.D1274E 0.22 tolerated(0.08) probably_damaging(0.996) TCGA-99-8025-01 6 10898309 10898309 G A SYCP2L Silent p.S134S 0.29 TCGA-99-8025-01 6 111631220 111631220 C T REV3L Missense_Mutation p.V2960I 0.05 tolerated(0.07) benign(0.015) TCGA-99-8025-01 6 149916233 149916233 G A KATNA1 Missense_Mutation p.S472L 0.15 deleterious(0) probably_damaging(0.998) TCGA-99-8025-01 6 153043387 153043387 G T MYCT1 Nonstop_Mutation p.*236Lext*22 0.61 TCGA-99-8025-01 6 154754614 154754614 T G CNKSR3 Missense_Mutation p.K179Q 0.33 deleterious(0.04) possibly_damaging(0.793) TCGA-99-8025-01 6 157517356 157517356 A T ARID1B Missense_Mutation p.Q1307L 0.45 benign(0.364) TCGA-99-8025-01 6 160494963 160494963 G T IGF2R Missense_Mutation p.A1708S 0.14 deleterious(0.03) probably_damaging(0.922) TCGA-99-8025-01 6 26189100 26189100 C A HIST1H4D Missense_Mutation p.D69Y 0.11 deleterious(0.01) possibly_damaging(0.861) TCGA-99-8025-01 6 26189215 26189215 G C HIST1H4D Missense_Mutation p.I30M 0.17 deleterious(0) probably_damaging(0.993) TCGA-99-8025-01 6 27420263 27420263 C T ZNF184 Missense_Mutation p.E359K 0.12 deleterious(0.03) probably_damaging(0.997) TCGA-99-8025-01 6 31639043 31639043 G T CSNK2B-LY6G5B-1181 Missense_Mutation p.G223V 0.47 probably_damaging(0.953) TCGA-99-8025-01 6 31844849 31844849 G C SLC44A4 Silent p.V17V 0.21 TCGA-99-8025-01 6 32184981 32184981 C T NOTCH4 Missense_Mutation p.G563S 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-99-8025-01 6 32370751 32370751 C T BTNL2 Missense_Mutation p.V224I 0.11 tolerated(0.74) benign(0.021) TCGA-99-8025-01 6 35840369 35840369 G C SRPK1 Missense_Mutation p.S241C 0.11 deleterious(0.02) possibly_damaging(0.76) TCGA-99-8025-01 6 36259099 36259099 G A PNPLA1 Missense_Mutation p.E70K 0.12 tolerated(0.19) benign(0.094) TCGA-99-8025-01 6 4047454 4047454 C T PRPF4B Missense_Mutation p.S636F 0.12 deleterious(0) unknown(0) TCGA-99-8025-01 6 51917992 51917992 G A PKHD1 Silent p.L674L 0.43 TCGA-99-8025-01 6 56399982 56399982 C A DST Missense_Mutation p.A3004S 0.47 probably_damaging(0.989) TCGA-99-8025-01 6 64394489 64394489 C G PHF3 Nonsense_Mutation p.S289* 0.28 TCGA-99-8025-01 6 7580939 7580939 A G DSP Missense_Mutation p.R1506G 0.20 benign(0.02) TCGA-99-8025-01 6 75851876 75851876 A G COL12A1 Missense_Mutation p.V1610A 0.52 possibly_damaging(0.791) TCGA-99-8025-01 6 76715120 76715120 A G IMPG1 Missense_Mutation p.M340T 0.57 tolerated(0.51) benign(0.006) TCGA-99-8025-01 6 79726319 79726319 G A PHIP Nonsense_Mutation p.Q393* 0.16 TCGA-99-8025-01 6 84904635 84904635 C A KIAA1009 Nonsense_Mutation p.E332* 0.39 TCGA-99-8025-01 6 97052726 97052726 G T FHL5 Missense_Mutation p.R87L 0.43 tolerated(0.41) benign(0.003) TCGA-99-8025-01 6 99282904 99282904 G T POU3F2 Missense_Mutation p.G52V 0.42 deleterious(0) possibly_damaging(0.656) TCGA-99-8025-01 7 100184131 100184131 C T FBXO24 5'Flank 0.44 TCGA-99-8025-01 7 100282985 100282985 C T GIGYF1 Missense_Mutation p.E392K 0.22 tolerated(0.88) unknown(0) TCGA-99-8025-01 7 100482974 100482974 C T SRRT Missense_Mutation p.R434W 0.12 deleterious(0) possibly_damaging(0.898) TCGA-99-8025-01 7 100692124 100692124 A T MUC17 Splice_Site p.X4179_splice 0.33 TCGA-99-8025-01 7 101877436 101877436 G T CUX1 Nonsense_Mutation p.E1191* 0.13 TCGA-99-8025-01 7 103234147 103234147 T A RELN Silent p.G1298G 0.33 TCGA-99-8025-01 7 106513229 106513229 G A PIK3CG Silent p.Q711Q 0.15 TCGA-99-8025-01 7 11485816 11485816 A C THSD7A Missense_Mutation p.V979G 0.27 tolerated(0.27) benign(0.01) TCGA-99-8025-01 7 128477508 128477508 C A FLNC Silent p.T252T 0.13 TCGA-99-8025-01 7 128490525 128490525 G C FLNC Missense_Mutation p.G1796R 0.19 deleterious(0) probably_damaging(1) TCGA-99-8025-01 7 131910976 131910976 G A PLXNA4 Silent p.T642T 0.12 TCGA-99-8025-01 7 139297963 139297963 T A HIPK2 Silent p.P699P 0.13 TCGA-99-8025-01 7 139715560 139715560 G C TBXAS1 Missense_Mutation p.G469R 0.15 deleterious(0) probably_damaging(0.996) TCGA-99-8025-01 7 141708454 141708454 G A MGAM Silent p.V92V 0.27 TCGA-99-8025-01 7 142008629 142008629 G T TRBV3-1 Missense_Mutation p.M34I 0.52 tolerated(0.2) benign(0.209) TCGA-99-8025-01 7 142630618 142630618 G T TRPV5 5'UTR 0.23 TCGA-99-8025-01 7 143013471 143013471 G A CLCN1 Missense_Mutation p.V56I 0.16 tolerated_low_confidence(0.46) benign(0.001) TCGA-99-8025-01 7 143048844 143048844 G C CLCN1 Missense_Mutation p.G918A 0.24 tolerated_low_confidence(0.38) benign(0.046) TCGA-99-8025-01 7 143807225 143807225 C A OR2A2 Missense_Mutation p.L184I 0.29 deleterious(0) possibly_damaging(0.907) TCGA-99-8025-01 7 149530961 149530961 A T ZNF862 5'Flank 0.14 TCGA-99-8025-01 7 150490634 150490634 C T TMEM176B Missense_Mutation p.A124T 0.30 tolerated(0.84) benign(0.046) TCGA-99-8025-01 7 151704998 151704998 G C GALNTL5 Missense_Mutation p.W332S 0.18 deleterious(0.02) benign(0.035) TCGA-99-8025-01 7 154667717 154667717 G T DPP6 Missense_Mutation p.G662V 0.26 deleterious(0) probably_damaging(0.998) TCGA-99-8025-01 7 17379756 17379756 G T AHR Silent p.V769V 0.19 TCGA-99-8025-01 7 22768383 22768383 G C IL6 Missense_Mutation p.K94N 0.28 deleterious(0.02) probably_damaging(0.921) TCGA-99-8025-01 7 2472627 2472627 G A CHST12 Missense_Mutation p.G118D 0.07 tolerated(0.65) benign(0.001) TCGA-99-8025-01 7 34698012 34698012 C T NPSR1 5'UTR 0.23 TCGA-99-8025-01 7 44260446 44260446 T C CAMK2B Missense_Mutation p.N551S 0.31 tolerated_low_confidence(0.08) benign(0.407) TCGA-99-8025-01 7 44739749 44739749 G A OGDH Missense_Mutation p.E814K 0.20 tolerated(1) benign(0.226) TCGA-99-8025-01 7 45650019 45650019 G T ADCY1 Missense_Mutation p.M277I 0.21 tolerated(0.06) benign(0.016) TCGA-99-8025-01 7 53103903 53103903 G A POM121L12 Missense_Mutation p.G180E 0.43 deleterious(0.01) benign(0.002) TCGA-99-8025-01 7 63720684 63720684 G C ZNF679 Missense_Mutation p.R42T 0.18 deleterious(0) probably_damaging(0.998) TCGA-99-8025-01 7 63721279 63721279 G C ZNF679 Missense_Mutation p.K78N 0.19 deleterious(0.03) possibly_damaging(0.655) TCGA-99-8025-01 7 63726834 63726834 C A ZNF679 Missense_Mutation p.Q275K 0.49 tolerated(1) benign(0.004) TCGA-99-8025-01 7 65579916 65579916 C G CRCP 5'UTR 0.27 TCGA-99-8025-01 7 73731983 73731983 C G CLIP2 Missense_Mutation p.A36G 0.23 deleterious(0.05) benign(0.046) TCGA-99-8025-01 7 76891544 76891544 A T CCDC146 Nonsense_Mutation p.R365* 0.21 TCGA-99-8025-01 7 80088083 80088083 C A GNAT3 Missense_Mutation p.M323I 0.36 tolerated(0.06) benign(0.397) TCGA-99-8025-01 7 892462 892462 G A SUN1 Missense_Mutation p.R309Q 0.25 tolerated(0.05) benign(0.028) TCGA-99-8025-01 7 89856810 89856810 C T STEAP2 Nonsense_Mutation p.Q340* 0.16 TCGA-99-8025-01 7 92734099 92734099 C T SAMD9 Missense_Mutation p.A438T 0.21 deleterious(0.04) probably_damaging(0.991) TCGA-99-8025-01 7 99752721 99752721 G C C7orf43 Silent p.L552L 0.18 TCGA-99-8025-01 8 106813664 106813664 C T ZFPM2 Nonsense_Mutation p.Q452* 0.14 TCGA-99-8025-01 8 121239521 121239521 T C COL14A1 Silent p.Y689Y 0.44 TCGA-99-8025-01 8 124358447 124358447 C A ATAD2 Missense_Mutation p.G804V 0.35 deleterious(0) probably_damaging(0.988) TCGA-99-8025-01 8 124989743 124989743 G A FER1L6 Silent p.R319R 0.29 TCGA-99-8025-01 8 144992003 144992003 C G PLEC Missense_Mutation p.V4133L 0.26 probably_damaging(0.998) TCGA-99-8025-01 8 145246689 145246689 G A MROH1 Silent p.Q262Q 0.14 TCGA-99-8025-01 8 145692395 145692395 G A KIFC2 Missense_Mutation p.A78T 0.16 tolerated_low_confidence(0.3) benign(0.002) TCGA-99-8025-01 8 1853834 1853834 G A ARHGEF10 Missense_Mutation p.R640Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-99-8025-01 8 22464484 22464484 C T CCAR2 Missense_Mutation p.P102S 0.50 tolerated(0.16) probably_damaging(1) TCGA-99-8025-01 8 23225689 23225689 C A LOXL2 Missense_Mutation p.R59L 0.55 deleterious(0) possibly_damaging(0.877) TCGA-99-8025-01 8 27097617 27097617 G T STMN4 Silent p.I154I 0.60 TCGA-99-8025-01 8 28976451 28976451 C A KIF13B Silent p.A1198A 0.54 TCGA-99-8025-01 8 3000057 3000057 C A CSMD1 Silent p.T2057T 0.38 TCGA-99-8025-01 8 3224677 3224677 T C CSMD1 Missense_Mutation p.R998G 0.31 probably_damaging(0.999) TCGA-99-8025-01 8 33342719 33342719 G C MAK16 5'UTR 0.13 TCGA-99-8025-01 8 38005811 38005811 C G STAR Missense_Mutation p.Q71H 0.40 tolerated(0.12) benign(0.176) TCGA-99-8025-01 8 38314887 38314887 G T FGFR1 Silent p.T59T 0.49 TCGA-99-8025-01 8 40438709 40438709 G T ZMAT4 Missense_Mutation p.L217M 0.53 tolerated(0.82) probably_damaging(0.988) TCGA-99-8025-01 8 61735190 61735190 C T CHD7 Missense_Mutation p.P1029L 0.29 probably_damaging(1) TCGA-99-8025-01 8 67364273 67364273 G T ADHFE1 Missense_Mutation p.G274C 0.41 deleterious(0) probably_damaging(0.983) TCGA-99-8025-01 8 67425830 67425830 C T C8orf46 Missense_Mutation p.A133V 0.03 tolerated(0.41) benign(0.008) TCGA-99-8025-01 8 73479901 73479901 C T KCNB2 5'UTR 0.27 TCGA-99-8025-01 8 75262778 75262778 C T GDAP1 Silent p.L28L 0.12 TCGA-99-8025-01 9 100008457 100008457 G A CCDC180 5'UTR 0.19 TCGA-99-8025-01 9 108127001 108127001 G T SLC44A1 Missense_Mutation p.R418M 0.12 deleterious(0) probably_damaging(1) TCGA-99-8025-01 9 112542776 112542776 A T PALM2-AKAP2 Missense_Mutation p.E3V 0.43 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-99-8025-01 9 115336826 115336826 G C KIAA1958 Missense_Mutation p.E156Q 0.07 deleterious(0) possibly_damaging(0.857) TCGA-99-8025-01 9 115920023 115920023 C G SLC31A2 Nonsense_Mutation p.S8* 0.22 TCGA-99-8025-01 9 116812420 116812420 C T ZNF618 Silent p.L853L 0.13 TCGA-99-8025-01 9 119097264 119097264 G C PAPPA Silent p.S1174S 0.45 TCGA-99-8025-01 9 125282078 125282078 A C OR1J4 Missense_Mutation p.H220P 0.48 deleterious_low_confidence(0.04) possibly_damaging(0.866) TCGA-99-8025-01 9 126132645 126132645 A T CRB2 Missense_Mutation p.N438I 0.07 deleterious(0.02) possibly_damaging(0.703) TCGA-99-8025-01 9 131186815 131186815 G C CERCAM Missense_Mutation p.A230P 0.07 deleterious(0.03) benign(0.016) TCGA-99-8025-01 9 135102405 135102405 G A NTNG2 Missense_Mutation p.A343T 0.34 tolerated(0.75) benign(0.012) TCGA-99-8025-01 9 135785997 135785997 G T TSC1 Missense_Mutation p.H408Q 0.21 tolerated(0.31) benign(0.026) TCGA-99-8025-01 9 135942481 135942481 G C CEL Missense_Mutation p.E265Q 0.19 tolerated(0.14) benign(0.024) TCGA-99-8025-01 9 136521627 136521627 G T DBH Intron 0.13 TCGA-99-8025-01 9 136910446 136910446 T C BRD3 Missense_Mutation p.H395R 0.25 deleterious(0) possibly_damaging(0.842) TCGA-99-8025-01 9 14807943 14807943 G T FREM1 Missense_Mutation p.A1028E 0.10 tolerated(0.12) benign(0.036) TCGA-99-8025-01 9 14863888 14863888 T A FREM1 Missense_Mutation p.H83L 0.10 deleterious(0) possibly_damaging(0.76) TCGA-99-8025-01 9 17394905 17394905 G T CNTLN Missense_Mutation p.R818L 0.37 tolerated(0.08) benign(0.033) TCGA-99-8025-01 9 32631684 32631684 G A TAF1L Silent p.C1298C 0.42 TCGA-99-8025-01 9 33442444 33442444 C A AQP3 Missense_Mutation p.G189C 0.35 deleterious(0) probably_damaging(0.998) TCGA-99-8025-01 9 43626259 43626259 C A SPATA31A6 Missense_Mutation p.G810C 0.31 tolerated(0.19) probably_damaging(0.946) TCGA-99-8025-01 9 71851939 71851939 G A TJP2 Missense_Mutation p.R720H 0.17 deleterious(0) probably_damaging(1) TCGA-99-8025-01 9 77354666 77354666 C T TRPM6 Silent p.E1820E 0.08 TCGA-99-8025-01 9 79320109 79320109 T A PRUNE2 Missense_Mutation p.I2361F 0.52 tolerated(0.35) benign(0.02) TCGA-99-8025-01 9 79325044 79325044 A G PRUNE2 Missense_Mutation p.W716R 0.44 deleterious(0) possibly_damaging(0.707) TCGA-99-8025-01 9 84607882 84607882 C T SPATA31D1 Missense_Mutation p.R833C 0.08 deleterious(0) benign(0.064) TCGA-99-8025-01 9 8486196 8486196 G C PTPRD Missense_Mutation p.S874C 0.21 tolerated(0.05) possibly_damaging(0.65) TCGA-99-8025-01 9 91926184 91926184 C T CKS2 5'UTR 0.38 TCGA-99-8025-01 9 99607184 99607184 G A ZNF782 Missense_Mutation p.L44F 0.09 deleterious(0.02) possibly_damaging(0.9) TCGA-99-8025-01 X 102317843 102317843 C A BEX1 Missense_Mutation p.E120D 0.29 tolerated(0.4) benign(0.107) TCGA-99-8025-01 X 122846715 122846715 T C THOC2 Missense_Mutation p.S39G 0.42 tolerated(0.25) benign(0.001) TCGA-99-8025-01 X 123838900 123838900 G C TENM1 Missense_Mutation p.I326M 0.50 deleterious(0.01) possibly_damaging(0.773) TCGA-99-8025-01 X 130215545 130215545 G C ARHGAP36 5'UTR 0.56 TCGA-99-8025-01 X 134305009 134305009 G A CT55 Silent p.L29L 0.18 TCGA-99-8025-01 X 134715460 134715460 A T DDX26B Nonsense_Mutation p.R829* 0.15 TCGA-99-8025-01 X 137749883 137749883 G T FGF13 Intron 0.42 TCGA-99-8025-01 X 147011749 147011749 A T FMR1 Missense_Mutation p.S206C 0.44 tolerated(0.06) benign(0.067) TCGA-99-8025-01 X 148035133 148035133 C A AFF2 Missense_Mutation p.P474H 0.31 tolerated(0.05) possibly_damaging(0.853) TCGA-99-8025-01 X 152612793 152612793 C T ZNF275 Missense_Mutation p.S217L 0.05 tolerated(0.11) possibly_damaging(0.763) TCGA-99-8025-01 X 153136408 153136408 C T L1CAM Silent p.L177L 0.28 TCGA-99-8025-01 X 154065908 154065908 C A F8 Missense_Mutation p.M2340I 0.37 tolerated(0.41) benign(0.003) TCGA-99-8025-01 X 31697668 31697668 C G DMD Missense_Mutation p.E2566Q 0.24 possibly_damaging(0.607) TCGA-99-8025-01 X 40506712 40506712 C T CXorf38 Missense_Mutation p.A21T 0.05 deleterious(0) probably_damaging(0.999) TCGA-99-8025-01 X 47434534 47434534 T A SYN1 Missense_Mutation p.H433L 0.67 tolerated(0.51) benign(0.085) TCGA-99-8025-01 X 48382176 48382176 G T EBP Missense_Mutation p.G6V 0.67 tolerated(0.27) benign(0.001) TCGA-99-8025-01 X 73064528 73064528 C A XIST RNA 0.50 TCGA-99-8025-01 X 75648966 75648966 G T MAGEE1 Missense_Mutation p.A215S 0.45 tolerated_low_confidence(0.62) benign(0.019) TCGA-99-8025-01 X 90691684 90691684 C A PABPC5 Missense_Mutation p.P370T 0.60 deleterious(0) possibly_damaging(0.869) TCGA-99-8028-01 10 103789483 103789483 C A C10orf76 Missense_Mutation p.R109L 0.11 tolerated(0.13) benign(0.073) TCGA-99-8028-01 10 103904063 103904063 G T PPRC1 Missense_Mutation p.G1203C 0.08 deleterious(0) probably_damaging(0.927) TCGA-99-8028-01 10 115531777 115531777 G T PLEKHS1 Missense_Mutation p.D195Y 0.05 tolerated(1) possibly_damaging(0.465) TCGA-99-8028-01 10 123903112 123903112 G C TACC2 Missense_Mutation p.G1909R 0.06 possibly_damaging(0.794) TCGA-99-8028-01 10 127436195 127436195 A T EDRF1 Missense_Mutation p.T969S 0.12 tolerated(0.08) probably_damaging(0.98) TCGA-99-8028-01 10 13233305 13233305 A T MCM10 Silent p.A475A 0.08 TCGA-99-8028-01 10 13239664 13239664 T C MCM10 Silent p.L673L 0.05 TCGA-99-8028-01 10 17373510 17373510 A G ST8SIA6 Missense_Mutation p.V140A 0.21 deleterious(0.01) benign(0.371) TCGA-99-8028-01 10 17756752 17756752 A G STAM Silent p.Q532Q 0.04 TCGA-99-8028-01 10 21124531 21124531 C A NEBL Nonsense_Mutation p.E454* 0.13 TCGA-99-8028-01 10 27702459 27702459 C A PTCHD3 Missense_Mutation p.V241L 0.07 tolerated(0.1) benign(0.128) TCGA-99-8028-01 10 294403 294403 A G ZMYND11 Missense_Mutation p.H452R 0.04 tolerated(0.15) probably_damaging(0.936) TCGA-99-8028-01 10 32096669 32096669 C A ARHGAP12 Missense_Mutation p.G820C 0.10 tolerated(0.08) benign(0.101) TCGA-99-8028-01 10 43297666 43297666 G T BMS1 Nonsense_Mutation p.E777* 0.05 TCGA-99-8028-01 10 85992512 85992512 G A LRIT1 Missense_Mutation p.P348L 0.11 deleterious(0.05) benign(0.005) TCGA-99-8028-01 10 88441552 88441552 C A LDB3 Silent p.L227L 0.08 TCGA-99-8028-01 11 113264300 113264300 G C ANKK1 Missense_Mutation p.G95R 0.10 deleterious(0) probably_damaging(0.988) TCGA-99-8028-01 11 114182844 114182844 A G NNMT Missense_Mutation p.Q147R 0.04 tolerated(0.33) benign(0.001) TCGA-99-8028-01 11 123777682 123777682 G T OR8D4 Missense_Mutation p.V182F 0.04 tolerated(0.23) possibly_damaging(0.815) TCGA-99-8028-01 11 123847545 123847545 G A OR10S1 Missense_Mutation p.A285V 0.08 tolerated(1) benign(0.021) TCGA-99-8028-01 11 123900848 123900848 C A OR10G8 Silent p.I173I 0.06 TCGA-99-8028-01 11 123900892 123900892 G T OR10G8 Missense_Mutation p.C188F 0.09 deleterious(0) probably_damaging(0.995) TCGA-99-8028-01 11 124180490 124180490 G A OR8D1 Missense_Mutation p.P58L 0.04 deleterious(0) probably_damaging(0.999) TCGA-99-8028-01 11 128786363 128786363 T A KCNJ5 Missense_Mutation p.F333I 0.06 deleterious(0) probably_damaging(0.964) TCGA-99-8028-01 11 130131117 130131117 T C ZBTB44 Missense_Mutation p.R218G 0.07 tolerated(0.28) benign(0.107) TCGA-99-8028-01 11 134158719 134158719 G T GLB1L3 Missense_Mutation p.V222L 0.05 tolerated(0.08) benign(0.232) TCGA-99-8028-01 11 22384285 22384285 G T SLC17A6 Missense_Mutation p.G221V 0.05 deleterious(0.01) probably_damaging(0.949) TCGA-99-8028-01 11 2433398 2433398 G T TRPM5 Missense_Mutation p.A814D 0.06 deleterious(0) probably_damaging(0.964) TCGA-99-8028-01 11 27679716 27679716 A T BDNF Silent p.P214P 0.07 TCGA-99-8028-01 11 30255205 30255205 G A FSHB Missense_Mutation p.G83D 0.06 deleterious(0.01) probably_damaging(0.997) TCGA-99-8028-01 11 35323111 35323119 TTGAAGAAA - SLC1A2 In_Frame_Del p.F269_N271del 0.08 TCGA-99-8028-01 11 49831737 49831737 C A RP11-707M1.1 RNA 0.08 TCGA-99-8028-01 11 55135866 55135866 T G OR4A15 Missense_Mutation p.C169W 0.04 deleterious_low_confidence(0) probably_damaging(1) TCGA-99-8028-01 11 55340041 55340041 C A OR4C16 Silent p.A146A 0.09 TCGA-99-8028-01 11 55419059 55419059 C A OR4S2 Nonsense_Mutation p.S227* 0.05 TCGA-99-8028-01 11 55433292 55433292 C A OR4C6 Missense_Mutation p.T217K 0.08 deleterious_low_confidence(0.01) benign(0.33) TCGA-99-8028-01 11 55594868 55594868 C T OR5L2 Silent p.P58P 0.11 TCGA-99-8028-01 11 55798207 55798207 G A OR5AS1 Missense_Mutation p.A105T 0.08 tolerated(0.09) benign(0.295) TCGA-99-8028-01 11 56143272 56143272 C A OR8U1 Missense_Mutation p.P58Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-99-8028-01 11 5727829 5727829 G T TRIM22 Silent p.V252V 0.08 TCGA-99-8028-01 11 57996009 57996009 G T OR10Q1 Missense_Mutation p.S113R 0.09 deleterious(0.04) possibly_damaging(0.643) TCGA-99-8028-01 11 60156932 60156932 G T MS4A7 Missense_Mutation p.D137Y 0.08 tolerated(1) benign(0.015) TCGA-99-8028-01 11 60783219 60783219 C A CD6 Silent p.P474P 0.06 TCGA-99-8028-01 11 63137816 63137816 G T SLC22A9 Missense_Mutation p.W96C 0.07 deleterious(0) probably_damaging(0.999) TCGA-99-8028-01 11 63141190 63141190 C A SLC22A9 Missense_Mutation p.P194H 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-99-8028-01 11 65766820 65766820 C A EIF1AD Splice_Site p.X118_splice 0.08 TCGA-99-8028-01 11 7509635 7509635 T A OLFML1 Missense_Mutation p.L136Q 0.19 tolerated(0.37) possibly_damaging(0.779) TCGA-99-8028-01 11 83195246 83195246 C A DLG2 Missense_Mutation p.S740I 0.07 deleterious(0.02) benign(0.215) TCGA-99-8028-01 11 83962335 83962335 C A DLG2 Splice_Site p.X174_splice 0.14 TCGA-99-8028-01 11 92881986 92881986 C T SLC36A4 Missense_Mutation p.R411H 0.07 tolerated(0.12) benign(0.091) TCGA-99-8028-01 12 100934501 100934501 C G NR1H4 Missense_Mutation p.A338G 0.07 deleterious(0.03) probably_damaging(0.975) TCGA-99-8028-01 12 101491471 101491471 G A ANO4 Silent p.R596R 0.08 TCGA-99-8028-01 12 104100719 104100719 C A STAB2 Silent p.A1382A 0.06 TCGA-99-8028-01 12 10599187 10599187 C A KLRC1 Missense_Mutation p.G222V 0.06 tolerated(0.29) possibly_damaging(0.53) TCGA-99-8028-01 12 106786903 106786903 A T POLR3B Missense_Mutation p.Q273L 0.07 tolerated(0.64) benign(0) TCGA-99-8028-01 12 109288126 109288126 C T DAO Missense_Mutation p.R199W 0.09 deleterious(0) probably_damaging(1) TCGA-99-8028-01 12 11286103 11286103 T A TAS2R30 Silent p.I247I 0.07 TCGA-99-8028-01 12 113614691 113614691 G A DDX54 Silent p.L236L 0.05 TCGA-99-8028-01 12 114793855 114793855 G C TBX5 Missense_Mutation p.P347A 0.08 tolerated(0.12) benign(0.254) TCGA-99-8028-01 12 117583936 117583936 C T FBXO21 Missense_Mutation p.V615M 0.04 deleterious(0) possibly_damaging(0.878) TCGA-99-8028-01 12 124091977 124091977 A T DDX55 Splice_Site p.X83_splice 0.09 TCGA-99-8028-01 12 124175078 124175078 A T TCTN2 Splice_Site p.X298_splice 0.08 TCGA-99-8028-01 12 132546831 132546831 G T EP400 Missense_Mutation p.Q2687H 0.10 benign(0.387) TCGA-99-8028-01 12 20792882 20792882 G T PDE3A Missense_Mutation p.D748Y 0.08 deleterious(0.01) possibly_damaging(0.466) TCGA-99-8028-01 12 21448710 21448710 A T SLCO1A2 Silent p.P364P 0.12 TCGA-99-8028-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.22 deleterious(0.04) probably_damaging(0.993) TCGA-99-8028-01 12 2566870 2566870 C A CACNA1C Missense_Mutation p.P252Q 0.06 deleterious(0) probably_damaging(0.998) TCGA-99-8028-01 12 29689123 29689123 T A TMTC1 Intron 0.06 TCGA-99-8028-01 12 32136199 32136199 G T KIAA1551 Missense_Mutation p.E770D 0.30 tolerated(1) benign(0) TCGA-99-8028-01 12 41327286 41327286 G T CNTN1 Missense_Mutation p.D243Y 0.04 deleterious(0) probably_damaging(1) TCGA-99-8028-01 12 42840060 42840060 A T PPHLN1 Missense_Mutation p.M440L 0.11 deleterious_low_confidence(0.04) benign(0.008) TCGA-99-8028-01 12 48367917 48367917 C T COL2A1 Silent p.E1424E 0.06 TCGA-99-8028-01 12 51074453 51074453 A T DIP2B Splice_Site p.X372_splice 0.14 TCGA-99-8028-01 12 53715132 53715132 C A AAAS Missense_Mutation p.G40C 0.06 tolerated(0.05) possibly_damaging(0.598) TCGA-99-8028-01 12 56031471 56031471 G A OR10P1 Missense_Mutation p.G266S 0.08 tolerated(1) benign(0.034) TCGA-99-8028-01 12 56477557 56477557 C G ERBB3 Silent p.G35G 0.05 TCGA-99-8028-01 12 57866309 57866309 G C ARHGAP9 Silent p.L729L 0.05 TCGA-99-8028-01 12 6125748 6125748 G T VWF Missense_Mutation p.P1749T 0.06 deleterious(0.01) benign(0.007) TCGA-99-8028-01 12 64519927 64519927 G T SRGAP1 Missense_Mutation p.V799L 0.04 tolerated(0.53) benign(0.029) TCGA-99-8028-01 12 66718823 66718823 C T HELB Silent p.L863L 0.06 TCGA-99-8028-01 12 68708812 68708812 C A MDM1 Missense_Mutation p.R472M 0.07 tolerated(0.05) benign(0.026) TCGA-99-8028-01 12 69651550 69651550 G T CPSF6 Missense_Mutation p.G187C 0.07 deleterious(0.01) unknown(0) TCGA-99-8028-01 12 70049230 70049230 G C BEST3 Silent p.S488S 0.04 TCGA-99-8028-01 12 83250788 83250788 G T TMTC2 Splice_Site p.X28_splice 0.08 TCGA-99-8028-01 12 96371728 96371728 C A HAL Nonsense_Mutation p.E550* 0.05 TCGA-99-8028-01 13 102359164 102359164 C G ITGBL1 Silent p.L397L 0.08 TCGA-99-8028-01 13 103280275 103280275 G A TPP2 Splice_Site p.X339_splice 0.08 TCGA-99-8028-01 13 113803614 113803614 G T F10 Missense_Mutation p.G417V 0.06 deleterious(0) probably_damaging(1) TCGA-99-8028-01 13 22246295 22246295 A G FGF9 Missense_Mutation p.I82V 0.05 tolerated(1) benign(0.001) TCGA-99-8028-01 13 25376579 25376579 G T RNF17 Missense_Mutation p.V607F 0.08 deleterious(0.01) probably_damaging(0.954) TCGA-99-8028-01 13 36748888 36748888 C A SOHLH2 Nonsense_Mutation p.E331* 0.07 TCGA-99-8028-01 13 39424180 39424180 A G FREM2 Missense_Mutation p.K2129E 0.10 tolerated(0.11) benign(0.324) TCGA-99-8028-01 13 52952524 52952524 C T THSD1 Silent p.L527L 0.06 TCGA-99-8028-01 14 105416199 105416199 C A AHNAK2 Missense_Mutation p.Q1863H 0.07 possibly_damaging(0.702) TCGA-99-8028-01 14 20764577 20764577 T A TTC5 Missense_Mutation p.N223I 0.07 deleterious(0.02) possibly_damaging(0.807) TCGA-99-8028-01 14 21961228 21961228 C T TOX4 Nonsense_Mutation p.Q485* 0.06 TCGA-99-8028-01 14 23862218 23862218 G T MYH6 Silent p.R1052R 0.06 TCGA-99-8028-01 14 23876269 23876269 T A MYH6 Missense_Mutation p.E55V 0.09 deleterious(0.02) benign(0.391) TCGA-99-8028-01 14 25076432 25076432 G C GZMH Missense_Mutation p.R174G 0.07 tolerated(0.14) benign(0.009) TCGA-99-8028-01 14 31112531 31112531 G T SCFD1 Missense_Mutation p.R178M 0.09 deleterious(0.01) possibly_damaging(0.45) TCGA-99-8028-01 14 95053760 95053760 C A SERPINA5 Missense_Mutation p.R21S 0.04 deleterious(0.01) possibly_damaging(0.87) TCGA-99-8028-01 14 97321690 97321690 G T VRK1 Missense_Mutation p.V236L 0.07 tolerated(0.08) benign(0.233) TCGA-99-8028-01 15 24922256 24922256 C G NPAP1 Silent p.T414T 0.09 TCGA-99-8028-01 15 24924366 24924366 G T NPAP1 Missense_Mutation p.A1118S 0.04 tolerated_low_confidence(0.14) benign(0.231) TCGA-99-8028-01 15 26825554 26825554 C T GABRB3 Silent p.K198K 0.15 TCGA-99-8028-01 15 34355873 34355873 C A CHRM5 Missense_Mutation p.P319T 0.11 tolerated(0.39) benign(0.122) TCGA-99-8028-01 15 43025385 43025385 C A CDAN1 Splice_Site p.X456_splice 0.06 TCGA-99-8028-01 15 43815987 43815987 A G MAP1A Silent p.T772T 0.17 TCGA-99-8028-01 15 45433203 45433203 C T DUOX1 Silent p.I500I 0.05 TCGA-99-8028-01 15 65497661 65497661 C T CILP Missense_Mutation p.E190K 0.04 tolerated(0.54) probably_damaging(0.998) TCGA-99-8028-01 15 72638868 72638868 C T HEXA Missense_Mutation p.G444S 0.13 deleterious(0) probably_damaging(0.995) TCGA-99-8028-01 15 74315681 74315681 G T PML Missense_Mutation p.R372L 0.08 tolerated(0.11) benign(0.041) TCGA-99-8028-01 15 76168529 76168529 G T UBE2Q2 Missense_Mutation p.G197V 0.08 deleterious(0.02) possibly_damaging(0.887) TCGA-99-8028-01 15 83725258 83725258 T G BTBD1 Silent p.T147T 0.12 TCGA-99-8028-01 15 91020971 91020971 G T IQGAP1 Missense_Mutation p.R1060L 0.06 deleterious(0) probably_damaging(0.998) TCGA-99-8028-01 16 1507298 1507298 C A CLCN7 Missense_Mutation p.G260V 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-99-8028-01 16 1536356 1536356 C A PTX4 Missense_Mutation p.V336L 0.09 deleterious(0.01) possibly_damaging(0.749) TCGA-99-8028-01 16 17202849 17202849 C A XYLT1 Silent p.G861G 0.13 TCGA-99-8028-01 16 20043524 20043524 A T GPR139 Missense_Mutation p.F199I 0.10 tolerated(0.11) probably_damaging(0.994) TCGA-99-8028-01 16 2156019 2156019 C A PKD1 Missense_Mutation p.L2570F 0.09 possibly_damaging(0.908) TCGA-99-8028-01 16 23080011 23080011 T A USP31 Missense_Mutation p.R1139W 0.12 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-99-8028-01 16 23695252 23695252 G A PLK1 Missense_Mutation p.R293H 0.05 deleterious(0) probably_damaging(1) TCGA-99-8028-01 16 25251490 25251490 T C ZKSCAN2 Missense_Mutation p.R851G 0.08 deleterious(0.01) probably_damaging(1) TCGA-99-8028-01 16 28157507 28157507 G A XPO6 Silent p.Y414Y 0.14 TCGA-99-8028-01 16 32264985 32264985 G T TP53TG3D Missense_Mutation p.R104I 0.04 tolerated_low_confidence(0.06) benign(0) TCGA-99-8028-01 16 32891912 32891912 A T SLC6A10P RNA 0.08 TCGA-99-8028-01 16 48204029 48204029 A G ABCC11 Missense_Mutation p.L1293P 0.06 deleterious(0) probably_damaging(1) TCGA-99-8028-01 16 49433039 49433039 C A C16orf78 Intron 0.10 TCGA-99-8028-01 16 51175560 51175560 G T SALL1 Silent p.I191I 0.06 TCGA-99-8028-01 16 61689569 61689569 C A CDH8 Missense_Mutation p.V571F 0.05 tolerated(0.19) benign(0.255) TCGA-99-8028-01 16 72992410 72992410 C A ZFHX3 Missense_Mutation p.R545S 0.09 benign(0.438) TCGA-99-8028-01 16 83781774 83781774 G C CDH13 Missense_Mutation p.D581H 0.05 tolerated(0.05) possibly_damaging(0.631) TCGA-99-8028-01 17 10253903 10253903 C A MYH13 Nonsense_Mutation p.E372* 0.07 TCGA-99-8028-01 17 10419243 10419243 C A MYH1 Missense_Mutation p.D169Y 0.11 deleterious(0) probably_damaging(0.932) TCGA-99-8028-01 17 10424632 10424632 G T MYH2 Silent p.R1931R 0.12 TCGA-99-8028-01 17 12852475 12852475 C T ARHGAP44 Missense_Mutation p.P294S 0.20 tolerated(0.1) benign(0.065) TCGA-99-8028-01 17 17962227 17962227 G A GID4 Missense_Mutation p.D218N 0.12 tolerated(0.08) probably_damaging(0.978) TCGA-99-8028-01 17 2203075 2203075 C A SMG6 Missense_Mutation p.K324N 0.11 deleterious_low_confidence(0.01) benign(0.121) TCGA-99-8028-01 17 27287971 27287971 G C SEZ6 Missense_Mutation p.R421G 0.10 deleterious(0.02) benign(0.156) TCGA-99-8028-01 17 29645285 29645285 A G EVI2A 3'UTR 0.11 TCGA-99-8028-01 17 3422043 3422043 C A TRPV3 Missense_Mutation p.G638C 0.15 deleterious(0) probably_damaging(1) TCGA-99-8028-01 17 36499492 36499492 C G GPR179 Missense_Mutation p.A61P 0.05 deleterious(0) possibly_damaging(0.84) TCGA-99-8028-01 17 38927945 38927945 T C KRT26 Missense_Mutation p.I141V 0.05 deleterious(0.01) benign(0.023) TCGA-99-8028-01 17 39506982 39506982 C A KRT33A Missense_Mutation p.R13L 0.17 tolerated(0.23) probably_damaging(0.968) TCGA-99-8028-01 17 39538404 39538404 G T KRT34 Missense_Mutation p.P74H 0.04 deleterious(0.01) probably_damaging(0.987) TCGA-99-8028-01 17 39728088 39728088 A T KRT9 Missense_Mutation p.Y53N 0.11 deleterious_low_confidence(0.02) unknown(0) TCGA-99-8028-01 17 43922658 43922658 G C SPPL2C Missense_Mutation p.C129S 0.08 deleterious_low_confidence(0.02) probably_damaging(0.957) TCGA-99-8028-01 17 44060837 44060837 G T MAPT Missense_Mutation p.D223Y 0.11 deleterious(0) probably_damaging(0.99) TCGA-99-8028-01 17 44143943 44143943 C A KANSL1 Missense_Mutation p.R603M 0.07 deleterious(0) probably_damaging(1) TCGA-99-8028-01 17 51901880 51901880 G A KIF2B Missense_Mutation p.A496T 0.13 deleterious(0.04) benign(0.39) TCGA-99-8028-01 17 51902396 51902396 G T KIF2B Missense_Mutation p.V668L 0.10 tolerated_low_confidence(0.07) benign(0.004) TCGA-99-8028-01 17 61573795 61573795 G A ACE Missense_Mutation p.A1141T 0.10 deleterious(0.05) possibly_damaging(0.513) TCGA-99-8028-01 17 64873421 64873421 C A CACNG5 5'UTR 0.10 TCGA-99-8028-01 17 65733689 65733689 C G NOL11 Missense_Mutation p.D428E 0.13 tolerated(0.08) benign(0.038) TCGA-99-8028-01 17 68171367 68171367 G T KCNJ2 Nonsense_Mutation p.E63* 0.10 TCGA-99-8028-01 17 68171720 68171720 G T KCNJ2 Missense_Mutation p.M180I 0.12 deleterious(0.01) probably_damaging(0.989) TCGA-99-8028-01 17 72368021 72368021 G T GPR142 Missense_Mutation p.R224L 0.11 deleterious(0) probably_damaging(0.998) TCGA-99-8028-01 17 7577556 7577556 C A TP53 Missense_Mutation p.C242F 0.15 deleterious(0) probably_damaging(1) TCGA-99-8028-01 17 78972164 78972164 A G CHMP6 Splice_Site p.X166_splice 0.06 TCGA-99-8028-01 17 7979494 7979494 T A ALOX12B Nonsense_Mutation p.K511* 0.13 TCGA-99-8028-01 18 28935132 28935132 G T DSG1 Silent p.L991L 0.07 TCGA-99-8028-01 18 29175117 29175117 A T TTR Missense_Mutation p.T79S 0.08 deleterious(0.03) possibly_damaging(0.656) TCGA-99-8028-01 18 43480998 43480998 C T EPG5 Missense_Mutation p.V1537M 0.08 tolerated(0.27) benign(0.013) TCGA-99-8028-01 18 6980563 6980563 C - LAMA1 Frame_Shift_Del p.R1988Sfs*8 0.09 TCGA-99-8028-01 18 73130832 73130832 C A SMIM21 Missense_Mutation p.V57F 0.13 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-99-8028-01 19 11649688 11649688 C A CNN1 5'UTR 0.12 TCGA-99-8028-01 19 11649689 11649689 C T CNN1 5'UTR 0.11 TCGA-99-8028-01 19 15052664 15052664 C A OR7C2 Missense_Mutation p.R122S 0.06 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-99-8028-01 19 15064962 15064962 T G SLC1A6 Missense_Mutation p.Q450P 0.09 deleterious(0) probably_damaging(0.988) TCGA-99-8028-01 19 16060291 16060291 G A OR10H4 Missense_Mutation p.M158I 0.04 tolerated(0.33) benign(0.008) TCGA-99-8028-01 19 23329189 23329189 G T ZNF730 Missense_Mutation p.G448V 0.08 deleterious(0.02) possibly_damaging(0.812) TCGA-99-8028-01 19 2873515 2873515 G T ZNF556 Missense_Mutation p.V9L 0.06 deleterious(0) unknown(0) TCGA-99-8028-01 19 30936083 30936083 G C ZNF536 Missense_Mutation p.L538F 0.07 tolerated(0.08) probably_damaging(0.997) TCGA-99-8028-01 19 31039421 31039421 G T ZNF536 Missense_Mutation p.Q965H 0.08 tolerated_low_confidence(0.08) benign(0.229) TCGA-99-8028-01 19 36051397 36051397 C G ATP4A Missense_Mutation p.A219P 0.08 deleterious(0.02) possibly_damaging(0.789) TCGA-99-8028-01 19 36634015 36634015 G T CAPNS1 Missense_Mutation p.M147I 0.10 tolerated(0.13) benign(0.171) TCGA-99-8028-01 19 38028084 38028084 G C ZNF793 Missense_Mutation p.R175P 0.11 tolerated(0.19) benign(0.044) TCGA-99-8028-01 19 38948887 38948887 G T RYR1 Missense_Mutation p.D708Y 0.04 probably_damaging(1) TCGA-99-8028-01 19 39825901 39825901 C A GMFG Missense_Mutation p.Q50H 0.03 deleterious(0) probably_damaging(0.999) TCGA-99-8028-01 19 42082628 42082628 T A CEACAM21 Translation_Start_Site p.M1? 0.06 deleterious(0) probably_damaging(1) TCGA-99-8028-01 19 42312900 42312900 C A CEACAM3 Silent p.T158T 0.09 TCGA-99-8028-01 19 43772201 43772201 G T PSG9 Silent p.V55V 0.12 TCGA-99-8028-01 19 45899652 45899652 T A PPP1R13L Missense_Mutation p.E252V 0.17 deleterious(0) probably_damaging(0.959) TCGA-99-8028-01 19 47124587 47124587 C A PTGIR Missense_Mutation p.V371L 0.07 tolerated_low_confidence(0.14) benign(0.003) TCGA-99-8028-01 19 48201948 48201948 G T GLTSCR1 Silent p.T1102T 0.11 TCGA-99-8028-01 19 51503858 51503858 G A KLK8 Missense_Mutation p.P63S 0.05 tolerated(0.65) benign(0.003) TCGA-99-8028-01 19 54177560 54177560 T A MIR498 RNA 0.07 TCGA-99-8028-01 19 54515431 54515431 C A CACNG6 Missense_Mutation p.H257Q 0.16 tolerated_low_confidence(0.69) benign(0.003) TCGA-99-8028-01 19 54932505 54932505 C G TTYH1 Silent p.S120S 0.11 TCGA-99-8028-01 19 55349195 55349195 G - KIR2DS4 Frame_Shift_Del p.V80Ffs*11 0.11 TCGA-99-8028-01 19 55417548 55417548 G A NCR1 Translation_Start_Site p.M1? 0.07 deleterious(0.01) probably_damaging(0.954) TCGA-99-8028-01 19 56704259 56704259 C A ZSCAN5B Nonsense_Mutation p.E55* 0.13 TCGA-99-8028-01 19 56901391 56901391 C A ZNF582 Missense_Mutation p.V71L 0.08 tolerated(0.56) benign(0.004) TCGA-99-8028-01 19 57642250 57642250 A T USP29 Missense_Mutation p.Q736L 0.08 tolerated(0.08) benign(0.005) TCGA-99-8028-01 19 57839521 57839521 G T ZNF543 Nonsense_Mutation p.E231* 0.06 TCGA-99-8028-01 19 6418511 6418511 C G KHSRP Missense_Mutation p.D288H 0.11 deleterious(0) possibly_damaging(0.866) TCGA-99-8028-01 19 884906 884906 C A MED16 Missense_Mutation p.V328L 0.12 tolerated(0.21) benign(0.234) TCGA-99-8028-01 19 8987249 8987249 G C MUC16 Silent p.S13946S 0.07 TCGA-99-8028-01 19 9056555 9056555 G T MUC16 Silent p.A10297A 0.07 TCGA-99-8028-01 19 9064371 9064371 G A MUC16 Missense_Mutation p.S7692F 0.06 unknown(0) TCGA-99-8028-01 19 9070670 9070670 C A MUC16 Silent p.G5592G 0.08 TCGA-99-8028-01 19 9204721 9204721 C A OR1M1 Silent p.T267T 0.08 TCGA-99-8028-01 19 9296521 9296521 G T OR7D2 Nonsense_Mutation p.E22* 0.12 TCGA-99-8028-01 1 110086322 110086322 G T GPR61 Silent p.V226V 0.06 TCGA-99-8028-01 1 111060225 111060225 A G KCNA10 Silent p.F395F 0.05 TCGA-99-8028-01 1 114450790 114450790 A C DCLRE1B Missense_Mutation p.H172P 0.12 deleterious(0) probably_damaging(0.962) TCGA-99-8028-01 1 114680331 114680331 T G SYT6 Missense_Mutation p.H201P 0.08 deleterious(0) probably_damaging(0.995) TCGA-99-8028-01 1 119466092 119466092 C G TBX15 Silent p.V170V 0.08 TCGA-99-8028-01 1 12343698 12343698 C A VPS13D Missense_Mutation p.P1847T 0.09 benign(0.006) TCGA-99-8028-01 1 145535836 145535836 G T ITGA10 Missense_Mutation p.C675F 0.09 deleterious(0.03) probably_damaging(1) TCGA-99-8028-01 1 149398998 149398998 C A HIST2H3PS2 3'Flank 0.17 TCGA-99-8028-01 1 151345142 151345142 C A SELENBP1 5'UTR 0.06 TCGA-99-8028-01 1 152324197 152324197 G A FLG2 Missense_Mutation p.T2022I 0.09 possibly_damaging(0.86) TCGA-99-8028-01 1 153614810 153614810 G A CHTOP Missense_Mutation p.R103Q 0.07 tolerated(0.25) unknown(0) TCGA-99-8028-01 1 154142943 154142943 T C TPM3 Silent p.A236A 0.19 TCGA-99-8028-01 1 154544088 154544088 C T CHRNB2 Silent p.G263G 0.08 TCGA-99-8028-01 1 155253905 155253905 G T HCN3 Missense_Mutation p.W283C 0.08 deleterious(0) probably_damaging(1) TCGA-99-8028-01 1 158651334 158651334 C G SPTA1 Missense_Mutation p.E172Q 0.03 tolerated(0.6) probably_damaging(0.998) TCGA-99-8028-01 1 161494745 161494745 G T HSPA6 Missense_Mutation p.E99D 0.08 tolerated_low_confidence(1) benign(0) TCGA-99-8028-01 1 162326880 162326880 A T NOS1AP Missense_Mutation p.Q298L 0.10 deleterious(0.02) possibly_damaging(0.641) TCGA-99-8028-01 1 162469875 162469875 G T UHMK1 Missense_Mutation p.W133C 0.06 deleterious(0) probably_damaging(0.956) TCGA-99-8028-01 1 165218685 165218685 C T LMX1A Silent p.R152R 0.05 TCGA-99-8028-01 1 16529032 16529032 C G ARHGEF19 Missense_Mutation p.A649P 0.05 tolerated(0.28) benign(0.002) TCGA-99-8028-01 1 166987187 166987187 G T MAEL Silent p.G344G 0.09 TCGA-99-8028-01 1 167059529 167059529 T C GPA33 5'UTR 0.09 TCGA-99-8028-01 1 167059531 167059531 G T GPA33 5'UTR 0.11 TCGA-99-8028-01 1 169698686 169698686 G T SELE Missense_Mutation p.Q282K 0.11 tolerated(0.98) benign(0.004) TCGA-99-8028-01 1 172411085 172411085 C A PIGC Silent p.R226R 0.09 TCGA-99-8028-01 1 174219771 174219771 G T RABGAP1L Splice_Site p.X292_splice 0.06 TCGA-99-8028-01 1 175372726 175372726 T A TNR Missense_Mutation p.S176C 0.10 deleterious(0) probably_damaging(0.95) TCGA-99-8028-01 1 176668546 176668546 G C PAPPA2 Silent p.G1019G 0.06 TCGA-99-8028-01 1 181767764 181767764 G T CACNA1E Nonsense_Mutation p.E2246* 0.24 TCGA-99-8028-01 1 182571618 182571618 T A RGS16 Nonsense_Mutation p.R53* 0.09 TCGA-99-8028-01 1 186050389 186050389 G T HMCN1 Missense_Mutation p.V2884L 0.09 possibly_damaging(0.576) TCGA-99-8028-01 1 186413120 186413120 A G PDC Silent p.D244D 0.05 TCGA-99-8028-01 1 197145789 197145789 C A ZBTB41 Missense_Mutation p.R595L 0.08 deleterious(0) probably_damaging(1) TCGA-99-8028-01 1 203032955 203032955 G T PPFIA4 Splice_Site p.X453_splice 0.06 TCGA-99-8028-01 1 204217998 204217998 A G PLEKHA6 Missense_Mutation p.L592P 0.11 deleterious(0) probably_damaging(0.99) TCGA-99-8028-01 1 215901645 215901645 G C USH2A Silent p.T3931T 0.10 TCGA-99-8028-01 1 216173815 216173815 C A USH2A Missense_Mutation p.A2139S 0.10 possibly_damaging(0.463) TCGA-99-8028-01 1 216850751 216850751 C A ESRRG Missense_Mutation p.A52S 0.06 tolerated(1) benign(0.022) TCGA-99-8028-01 1 222695840 222695840 C A HHIPL2 3'UTR 0.15 TCGA-99-8028-01 1 226180674 226180674 C G SDE2 Missense_Mutation p.A90P 0.11 deleterious(0) probably_damaging(0.999) TCGA-99-8028-01 1 227076674 227076674 G T PSEN2 Silent p.A237A 0.06 TCGA-99-8028-01 1 228464890 228464890 G A OBSCN Silent p.T2585T 0.25 TCGA-99-8028-01 1 228465539 228465539 G T OBSCN Missense_Mutation p.R2709L 0.11 possibly_damaging(0.857) TCGA-99-8028-01 1 231374868 231374868 A G C1orf131 Missense_Mutation p.V62A 0.06 tolerated(0.74) benign(0.009) TCGA-99-8028-01 1 237632437 237632437 G T RYR2 Missense_Mutation p.G553V 0.07 possibly_damaging(0.542) TCGA-99-8028-01 1 237753956 237753956 G T RYR2 Missense_Mutation p.G1275V 0.05 benign(0.001) TCGA-99-8028-01 1 237837393 237837393 T G RYR2 Intron 0.10 TCGA-99-8028-01 1 241886637 241886637 A G WDR64 Missense_Mutation p.S355G 0.12 tolerated(0.26) probably_damaging(0.998) TCGA-99-8028-01 1 247586606 247586606 T A NLRP3 Missense_Mutation p.L120I 0.09 tolerated(0.08) benign(0.017) TCGA-99-8028-01 1 247752190 247752190 G T OR2G2 Missense_Mutation p.V177L 0.06 tolerated(0.42) benign(0.028) TCGA-99-8028-01 1 247835486 247835486 C A OR13G1 Silent p.V286V 0.09 TCGA-99-8028-01 1 248004466 248004466 G T OR11L1 Missense_Mutation p.L245M 0.06 deleterious(0) probably_damaging(0.994) TCGA-99-8028-01 1 248004467 248004467 G T OR11L1 Missense_Mutation p.H244Q 0.06 deleterious(0) probably_damaging(1) TCGA-99-8028-01 1 248059519 248059519 T A OR2W3 Missense_Mutation p.L211M 0.11 deleterious(0.01) probably_damaging(0.988) TCGA-99-8028-01 1 248487546 248487546 C A OR2M7 Missense_Mutation p.G109C 0.04 deleterious(0) probably_damaging(0.997) TCGA-99-8028-01 1 248637080 248637080 G T OR2T3 Missense_Mutation p.Q143H 0.08 tolerated(0.82) benign(0.003) TCGA-99-8028-01 1 25254076 25254076 C A RUNX3 Missense_Mutation p.R157L 0.04 deleterious(0.01) probably_damaging(0.998) TCGA-99-8028-01 1 32542911 32542911 C G TMEM39B Silent p.L194L 0.10 TCGA-99-8028-01 1 33956744 33956744 C T ZSCAN20 Missense_Mutation p.P296S 0.08 tolerated(0.11) benign(0.01) TCGA-99-8028-01 1 40775619 40775619 C A COL9A2 Missense_Mutation p.K279N 0.04 deleterious(0) benign(0.403) TCGA-99-8028-01 1 43778196 43778196 G A TIE1 Silent p.Q617Q 0.09 TCGA-99-8028-01 1 46977903 46977903 G T DMBX1 Missense_Mutation p.A291S 0.20 tolerated_low_confidence(0.8) benign(0.082) TCGA-99-8028-01 1 52847401 52847401 T A ORC1 Silent p.T682T 0.11 TCGA-99-8028-01 1 55607342 55607342 C A USP24 Missense_Mutation p.M899I 0.13 tolerated(0.23) benign(0.001) TCGA-99-8028-01 1 63294775 63294775 A T ATG4C Missense_Mutation p.K287N 0.06 deleterious(0.01) probably_damaging(0.941) TCGA-99-8028-01 1 65855292 65855292 G T DNAJC6 Missense_Mutation p.A484S 0.04 tolerated(1) benign(0.001) TCGA-99-8028-01 1 70482218 70482218 G T LRRC7 Splice_Site p.X402_splice 0.17 TCGA-99-8028-01 1 70504266 70504266 C G LRRC7 Missense_Mutation p.T882S 0.07 tolerated_low_confidence(0.47) benign(0.004) TCGA-99-8028-01 1 71318495 71318495 G T PTGER3 3'UTR 0.08 TCGA-99-8028-01 1 75038003 75038003 G T C1orf173 Missense_Mutation p.P1131T 0.13 deleterious(0.01) benign(0.311) TCGA-99-8028-01 1 75626543 75626543 C G LHX8 Missense_Mutation p.P345R 0.07 deleterious(0.01) possibly_damaging(0.676) TCGA-99-8028-01 1 86960043 86960043 C A CLCA1 Silent p.A618A 0.11 TCGA-99-8028-01 1 91788737 91788737 C A HFM1 Missense_Mutation p.C816F 0.09 deleterious(0) probably_damaging(0.996) TCGA-99-8028-01 1 91844620 91844620 T A HFM1 Silent p.P386P 0.08 TCGA-99-8028-01 1 92441875 92441875 C A BRDT Missense_Mutation p.S166R 0.07 tolerated(0.12) benign(0.002) TCGA-99-8028-01 20 18794945 18794945 C A SCP2D1 3'UTR 0.12 TCGA-99-8028-01 20 1902148 1902148 C A SIRPA Missense_Mutation p.L182M 0.04 deleterious(0) probably_damaging(0.993) TCGA-99-8028-01 20 20036618 20036618 G A CRNKL1 Missense_Mutation p.T14I 0.08 deleterious_low_confidence(0) benign(0) TCGA-99-8028-01 20 23065642 23065642 G C CD93 Missense_Mutation p.C396W 0.08 deleterious(0) probably_damaging(1) TCGA-99-8028-01 20 2320518 2320518 G T TGM3 Missense_Mutation p.V607L 0.07 tolerated(0.05) benign(0.077) TCGA-99-8028-01 20 33328482 33328482 T C NCOA6 Missense_Mutation p.T1860A 0.09 benign(0.001) TCGA-99-8028-01 20 35826807 35826807 G A RPN2 Missense_Mutation p.C72Y 0.08 deleterious(0) probably_damaging(1) TCGA-99-8028-01 20 43047093 43047093 A T HNF4A Missense_Mutation p.E226V 0.07 deleterious(0) probably_damaging(0.999) TCGA-99-8028-01 20 44507231 44507231 G T ZSWIM3 Missense_Mutation p.W678C 0.13 deleterious(0) probably_damaging(0.999) TCGA-99-8028-01 20 4781701 4781701 G A RASSF2 5'UTR 0.06 TCGA-99-8028-01 20 5528360 5528360 C G GPCPD1 Missense_Mutation p.E656Q 0.07 tolerated(0.58) benign(0.017) TCGA-99-8028-01 20 61340904 61340904 C A NTSR1 Silent p.T115T 0.10 TCGA-99-8028-01 20 61870741 61870741 G T BIRC7 Silent p.A227A 0.11 TCGA-99-8028-01 20 62839456 62839456 G A MYT1 Missense_Mutation p.E303K 0.10 benign(0.218) TCGA-99-8028-01 21 22841089 22841089 T G NCAM2 Missense_Mutation p.I627M 0.08 deleterious(0) possibly_damaging(0.856) TCGA-99-8028-01 21 28338447 28338447 G T ADAMTS5 Silent p.G88G 0.06 TCGA-99-8028-01 21 34799249 34799249 C T IFNGR2 Silent p.I157I 0.09 TCGA-99-8028-01 21 37605233 37605233 G T DOPEY2 Missense_Mutation p.A828S 0.06 deleterious(0.05) benign(0.176) TCGA-99-8028-01 21 37609570 37609570 G T DOPEY2 Missense_Mutation p.R878L 0.09 tolerated(0.83) benign(0.01) TCGA-99-8028-01 21 39086964 39086964 C G KCNJ6 Missense_Mutation p.E166Q 0.04 deleterious(0.02) probably_damaging(0.978) TCGA-99-8028-01 21 43706075 43706075 G T ABCG1 Missense_Mutation p.C315F 0.06 deleterious(0) probably_damaging(0.96) TCGA-99-8028-01 21 43867343 43867343 G A UBASH3A 3'UTR 0.07 TCGA-99-8028-01 21 45656865 45656865 G T ICOSLG Silent p.S97S 0.09 TCGA-99-8028-01 21 47571536 47571536 C A FTCD Missense_Mutation p.G191V 0.08 deleterious(0.04) possibly_damaging(0.598) TCGA-99-8028-01 22 20783898 20783898 A T SCARF2 Missense_Mutation p.L450H 0.09 deleterious(0) probably_damaging(0.996) TCGA-99-8028-01 22 21192992 21192992 C A PI4KA Missense_Mutation p.V62L 0.06 tolerated(0.69) benign(0.001) TCGA-99-8028-01 22 32625228 32625228 G A SLC5A4 Silent p.T411T 0.10 TCGA-99-8028-01 22 36907015 36907015 C A EIF3D 3'UTR 0.06 TCGA-99-8028-01 22 37602624 37602624 C G SSTR3 Missense_Mutation p.G407R 0.05 tolerated_low_confidence(0.21) benign(0.006) TCGA-99-8028-01 2 113890241 113890241 C A IL1RN Missense_Mutation p.N112K 0.05 tolerated(0.09) probably_damaging(0.93) TCGA-99-8028-01 2 11758936 11758936 A T GREB1 Missense_Mutation p.Y1312F 0.15 deleterious(0.01) benign(0.05) TCGA-99-8028-01 2 118575267 118575267 G T DDX18 Missense_Mutation p.K111N 0.13 deleterious(0.02) benign(0.244) TCGA-99-8028-01 2 125284956 125284956 G A CNTNAP5 Silent p.K523K 0.07 TCGA-99-8028-01 2 131521157 131521157 C A AMER3 Silent p.I504I 0.12 TCGA-99-8028-01 2 141459778 141459778 C A LRP1B Silent p.V2078V 0.07 TCGA-99-8028-01 2 141607869 141607869 G A LRP1B Missense_Mutation p.R1581C 0.11 possibly_damaging(0.689) TCGA-99-8028-01 2 154996878 154996878 A G GALNT13 Silent p.P57P 0.09 TCGA-99-8028-01 2 155306993 155306993 C G GALNT13 Missense_Mutation p.P534R 0.10 tolerated(0.07) probably_damaging(0.999) TCGA-99-8028-01 2 157186542 157186542 C T NR4A2 Missense_Mutation p.A53T 0.05 deleterious(0.02) probably_damaging(0.927) TCGA-99-8028-01 2 166771850 166771850 G A TTC21B Nonsense_Mutation p.Q667* 0.11 TCGA-99-8028-01 2 169801117 169801117 C A ABCB11 Missense_Mutation p.G870W 0.12 deleterious(0) probably_damaging(0.993) TCGA-99-8028-01 2 179431647 179431647 G A TTN Silent p.T26404T 0.06 TCGA-99-8028-01 2 179451888 179451888 G T TTN Silent p.V21350V 0.05 TCGA-99-8028-01 2 188210985 188210985 T C CALCRL Missense_Mutation p.S438G 0.16 tolerated(0.11) benign(0.001) TCGA-99-8028-01 2 198367823 198367823 G T HSPE1 Nonsense_Mutation p.G77* 0.05 TCGA-99-8028-01 2 207437889 207437889 T C ADAM23 Silent p.I569I 0.04 TCGA-99-8028-01 2 21228222 21228222 G A APOB Silent p.L3840L 0.07 TCGA-99-8028-01 2 212426710 212426710 C A ERBB4 Missense_Mutation p.G802V 0.04 deleterious(0) probably_damaging(1) TCGA-99-8028-01 2 215440491 215440491 T A VWC2L Missense_Mutation p.W206R 0.06 tolerated(1) possibly_damaging(0.864) TCGA-99-8028-01 2 217124067 217124067 G T MARCH4 Silent p.R401R 0.15 TCGA-99-8028-01 2 218954038 218954038 G T RUFY4 Silent p.V542V 0.11 TCGA-99-8028-01 2 228004956 228004956 T C COL4A4 Splice_Site p.X39_splice 0.05 TCGA-99-8028-01 2 242716323 242716323 G T GAL3ST2 5'UTR 0.19 TCGA-99-8028-01 2 242757931 242757931 C A NEU4 Missense_Mutation p.Q351K 0.19 tolerated(0.54) benign(0.083) TCGA-99-8028-01 2 27354558 27354558 G A PREB Missense_Mutation p.H381Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-99-8028-01 2 27700895 27700895 C A IFT172 Silent p.L378L 0.12 TCGA-99-8028-01 2 30966322 30966322 C A CAPN13 Missense_Mutation p.V458L 0.09 tolerated(0.06) benign(0.168) TCGA-99-8028-01 2 33534500 33534500 G T LTBP1 Splice_Site p.X1161_splice 0.16 TCGA-99-8028-01 2 44036905 44036905 G T DYNC2LI1 Nonstop_Mutation p.*352Lext*21 0.13 TCGA-99-8028-01 2 46611659 46611659 C T EPAS1 Missense_Mutation p.R825W 0.04 deleterious(0.01) probably_damaging(0.981) TCGA-99-8028-01 2 69409731 69409731 G A ANTXR1 Missense_Mutation p.R431Q 0.04 tolerated(0.11) benign(0.089) TCGA-99-8028-01 2 69569302 69569302 A C GFPT1 Missense_Mutation p.S395R 0.04 deleterious(0) probably_damaging(1) TCGA-99-8028-01 2 74593130 74593130 G C DCTN1 Missense_Mutation p.L926V 0.06 tolerated(0.47) benign(0.009) TCGA-99-8028-01 2 77746040 77746040 T A LRRTM4 Missense_Mutation p.I319F 0.19 deleterious(0) possibly_damaging(0.764) TCGA-99-8028-01 2 79312317 79312317 C A REG1B 3'UTR 0.09 TCGA-99-8028-01 2 80772105 80772105 A T CTNNA2 Splice_Site p.X431_splice 0.10 TCGA-99-8028-01 2 84668443 84668443 T C SUCLG1 Silent p.V153V 0.10 TCGA-99-8028-01 2 88327418 88327418 C G KRCC1 Missense_Mutation p.S222T 0.06 tolerated(0.06) benign(0.025) TCGA-99-8028-01 2 88828652 88828652 A T TEX37 Missense_Mutation p.Y68F 0.04 tolerated_low_confidence(0.08) possibly_damaging(0.866) TCGA-99-8028-01 2 89185400 89185400 G T IGKV4-1 Missense_Mutation p.A32S 0.13 tolerated(1) benign(0.223) TCGA-99-8028-01 2 89247034 89247034 G C IGKV1-5 Missense_Mutation p.R46G 0.08 deleterious(0.01) benign(0.045) TCGA-99-8028-01 2 95481217 95481217 C A ANKRD20A8P RNA 0.06 TCGA-99-8028-01 2 96798326 96798326 G T ASTL Missense_Mutation p.A197D 0.10 deleterious(0) probably_damaging(0.998) TCGA-99-8028-01 2 99695169 99695169 T A TSGA10 Nonsense_Mutation p.K279* 0.09 TCGA-99-8028-01 3 10413499 10413499 C T ATP2B2 Silent p.K551K 0.12 TCGA-99-8028-01 3 108366907 108366907 G T DZIP3 Missense_Mutation p.G637V 0.07 tolerated_low_confidence(0.25) benign(0.001) TCGA-99-8028-01 3 122944080 122944080 G T SEC22A Silent p.G159G 0.07 TCGA-99-8028-01 3 123014997 123014997 C T ADCY5 Silent p.L999L 0.07 TCGA-99-8028-01 3 123049777 123049777 G T ADCY5 Missense_Mutation p.H535Q 0.07 deleterious(0.04) possibly_damaging(0.744) TCGA-99-8028-01 3 124378292 124378292 G T KALRN Missense_Mutation p.Q159H 0.11 deleterious(0) probably_damaging(0.957) TCGA-99-8028-01 3 154055772 154055772 T C GPR149 Missense_Mutation p.S638G 0.16 deleterious(0) probably_damaging(0.993) TCGA-99-8028-01 3 164741565 164741565 C A SI Splice_Site p.X965_splice 0.13 TCGA-99-8028-01 3 167159884 167159884 C A SERPINI2 3'UTR 0.14 TCGA-99-8028-01 3 180359854 180359854 C A CCDC39 Nonsense_Mutation p.E601* 0.05 TCGA-99-8028-01 3 183471913 183471913 G T YEATS2 Splice_Site p.X384_splice 0.11 TCGA-99-8028-01 3 19575088 19575088 G T KCNH8 Missense_Mutation p.G941W 0.04 deleterious_low_confidence(0.01) benign(0.437) TCGA-99-8028-01 3 196281164 196281164 C A WDR53 Missense_Mutation p.G332V 0.06 tolerated(0.5) benign(0.013) TCGA-99-8028-01 3 37583978 37583978 T C ITGA9 Missense_Mutation p.Y531H 0.09 deleterious(0) probably_damaging(0.987) TCGA-99-8028-01 3 38519355 38519355 G T ACVR2B Missense_Mutation p.Q88H 0.08 tolerated(0.21) benign(0.039) TCGA-99-8028-01 3 42680902 42680902 G T NKTR Missense_Mutation p.A1236S 0.06 tolerated_low_confidence(0.21) benign(0.191) TCGA-99-8028-01 3 58641299 58641299 G T FAM3D 5'UTR 0.10 TCGA-99-8028-01 4 100460412 100460412 G T C4orf17 Missense_Mutation p.A241S 0.04 tolerated(0.08) benign(0.379) TCGA-99-8028-01 4 114279580 114279580 G A ANK2 Missense_Mutation p.R3269K 0.04 benign(0.007) TCGA-99-8028-01 4 114279809 114279809 G T ANK2 Missense_Mutation p.K3345N 0.08 probably_damaging(0.944) TCGA-99-8028-01 4 115997287 115997287 C T NDST4 Silent p.R302R 0.07 TCGA-99-8028-01 4 122724173 122724173 G T EXOSC9 Splice_Site p.X128_splice 0.10 TCGA-99-8028-01 4 13597538 13597538 C A BOD1L1 Missense_Mutation p.G2684C 0.06 benign(0.029) TCGA-99-8028-01 4 162459402 162459402 C A FSTL5 Missense_Mutation p.A410S 0.05 deleterious(0.04) probably_damaging(0.981) TCGA-99-8028-01 4 164393428 164393428 G T TKTL2 Missense_Mutation p.P487T 0.05 tolerated(0.08) benign(0.033) TCGA-99-8028-01 4 1705370 1705370 T A SLBP Silent p.A78A 0.09 TCGA-99-8028-01 4 175897069 175897069 C A ADAM29 Missense_Mutation p.D131E 0.07 deleterious(0.01) benign(0.3) TCGA-99-8028-01 4 55152062 55152062 G A PDGFRA Missense_Mutation p.V832M 0.07 tolerated(0.05) probably_damaging(0.998) TCGA-99-8028-01 4 79285087 79285087 C T FRAS1 Silent p.C867C 0.08 TCGA-99-8028-01 4 88766510 88766510 C A MEPE Missense_Mutation p.L164M 0.07 tolerated(0.09) probably_damaging(0.977) TCGA-99-8028-01 4 90872782 90872782 C G MMRN1 Missense_Mutation p.P1049A 0.05 deleterious(0) probably_damaging(1) TCGA-99-8028-01 5 10250480 10250480 G C CCT5 Missense_Mutation p.D10H 0.05 deleterious(0) probably_damaging(0.989) TCGA-99-8028-01 5 102522037 102522037 C G PPIP5K2 Silent p.G1062G 0.09 TCGA-99-8028-01 5 115152142 115152142 G T CDO1 5'UTR 0.08 TCGA-99-8028-01 5 122729125 122729125 C A CEP120 Nonsense_Mutation p.G227* 0.14 TCGA-99-8028-01 5 131398393 131398393 G T IL3 Missense_Mutation p.W123L 0.12 tolerated(0.69) benign(0.03) TCGA-99-8028-01 5 13792276 13792276 C A DNAH5 Missense_Mutation p.V2759L 0.16 benign(0.299) TCGA-99-8028-01 5 140011407 140011407 C T CD14 3'UTR 0.09 TCGA-99-8028-01 5 140719771 140719771 C A PCDHGA2 Missense_Mutation p.D411E 0.12 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-99-8028-01 5 140737050 140737050 G C PCDHGA4 Silent p.A761A 0.12 TCGA-99-8028-01 5 140739882 140739882 C T PCDHGB2 Silent p.D60D 0.06 TCGA-99-8028-01 5 140750675 140750675 C G PCDHGB3 Missense_Mutation p.N238K 0.07 deleterious(0) probably_damaging(0.983) TCGA-99-8028-01 5 150672930 150672930 C A SLC36A3 Missense_Mutation p.W133C 0.08 deleterious(0) probably_damaging(0.973) TCGA-99-8028-01 5 156514194 156514194 C A HAVCR2 Missense_Mutation p.E275D 0.13 deleterious(0.01) possibly_damaging(0.739) TCGA-99-8028-01 5 161116322 161116322 G T GABRA6 Missense_Mutation p.C170F 0.08 deleterious(0) probably_damaging(0.999) TCGA-99-8028-01 5 16451879 16451879 G A ZNF622 Nonsense_Mutation p.R441* 0.10 TCGA-99-8028-01 5 169020408 169020408 G T SPDL1 Missense_Mutation p.Q129H 0.08 tolerated(0.06) probably_damaging(0.999) TCGA-99-8028-01 5 178419059 178419059 G T GRM6 Missense_Mutation p.T177K 0.09 deleterious(0) probably_damaging(1) TCGA-99-8028-01 5 179668157 179668157 T A MAPK9 Splice_Site p.X291_splice 0.03 TCGA-99-8028-01 5 23522894 23522894 G A PRDM9 Nonsense_Mutation p.W261* 0.05 TCGA-99-8028-01 5 26915964 26915964 A C CDH9 Missense_Mutation p.S99R 0.09 deleterious(0) benign(0.238) TCGA-99-8028-01 5 2749646 2749646 G A IRX2 Missense_Mutation p.R169C 0.07 deleterious(0) probably_damaging(0.997) TCGA-99-8028-01 5 32143957 32143957 T A GOLPH3 Silent p.I85I 0.09 TCGA-99-8028-01 5 33684078 33684078 C A ADAMTS12 Silent p.R239R 0.18 TCGA-99-8028-01 5 35861072 35861073 - A IL7R Frame_Shift_Ins p.N68Kfs*5 0.16 TCGA-99-8028-01 5 39341776 39341776 A G C9 Silent p.F70F 0.10 TCGA-99-8028-01 5 41382400 41382400 G T PLCXD3 Missense_Mutation p.H114N 0.10 deleterious(0) probably_damaging(1) TCGA-99-8028-01 5 41842860 41842860 G C OXCT1 Missense_Mutation p.H196Q 0.03 tolerated(0.49) benign(0.006) TCGA-99-8028-01 5 45262506 45262506 C A HCN1 Missense_Mutation p.M730I 0.19 tolerated_low_confidence(0.68) benign(0) TCGA-99-8028-01 5 66461312 66461312 G C MAST4 Missense_Mutation p.S2102T 0.15 benign(0.013) TCGA-99-8028-01 5 66479359 66479359 G T CD180 Missense_Mutation p.Q438K 0.11 deleterious(0.02) benign(0.063) TCGA-99-8028-01 5 80643712 80643712 T C ACOT12 Silent p.T178T 0.11 TCGA-99-8028-01 5 90124847 90124847 G T GPR98 Missense_Mutation p.Q5485H 0.04 possibly_damaging(0.781) TCGA-99-8028-01 5 9197364 9197364 C A SEMA5A Silent p.A328A 0.13 TCGA-99-8028-01 5 92929327 92929327 G T NR2F1 Missense_Mutation p.A351S 0.06 deleterious(0.03) possibly_damaging(0.826) TCGA-99-8028-01 5 94956165 94956165 A T GPR150 Silent p.T62T 0.20 TCGA-99-8028-01 6 100060974 100060974 C A PRDM13 Missense_Mutation p.H155N 0.11 deleterious(0) probably_damaging(0.997) TCGA-99-8028-01 6 112466014 112466014 G T LAMA4 Silent p.T825T 0.11 TCGA-99-8028-01 6 128134894 128134894 G T THEMIS Missense_Mutation p.Q298K 0.06 tolerated(0.3) benign(0.002) TCGA-99-8028-01 6 128297928 128297928 C G PTPRK Splice_Site p.X1288_splice 0.09 TCGA-99-8028-01 6 129419545 129419545 C T LAMA2 Silent p.P208P 0.07 TCGA-99-8028-01 6 130761699 130761699 C A TMEM200A Silent p.P44P 0.06 TCGA-99-8028-01 6 13230268 13230268 G T PHACTR1 Splice_Site p.X412_splice 0.11 TCGA-99-8028-01 6 133783520 133783520 C A EYA4 Missense_Mutation p.A162D 0.10 deleterious(0) benign(0.237) TCGA-99-8028-01 6 143094948 143094948 C A HIVEP2 Missense_Mutation p.G310C 0.09 deleterious(0) possibly_damaging(0.713) TCGA-99-8028-01 6 143095831 143095831 C A HIVEP2 Missense_Mutation p.R15S 0.04 deleterious(0.02) benign(0.293) TCGA-99-8028-01 6 143654577 143654577 A T AIG1 Missense_Mutation p.Q225L 0.06 tolerated(0.33) benign(0.029) TCGA-99-8028-01 6 161134090 161134090 G T PLG Missense_Mutation p.Q160H 0.05 tolerated(0.26) benign(0.004) TCGA-99-8028-01 6 25813395 25813395 A G SLC17A1 Silent p.Y221Y 0.19 TCGA-99-8028-01 6 27840995 27840995 C A HIST1H4L Silent p.L98L 0.06 TCGA-99-8028-01 6 35087018 35087018 G A TCP11 Silent p.V435V 0.05 TCGA-99-8028-01 6 36287196 36287196 G C C6orf222 Missense_Mutation p.C620W 0.06 tolerated(0.11) benign(0.427) TCGA-99-8028-01 6 37617941 37617941 C T MDGA1 Missense_Mutation p.R518H 0.08 deleterious(0.05) possibly_damaging(0.883) TCGA-99-8028-01 6 41309601 41309601 G A NCR2 Missense_Mutation p.C155Y 0.15 tolerated(0.25) possibly_damaging(0.706) TCGA-99-8028-01 6 49666169 49666169 G T CRISP2 Missense_Mutation p.S108Y 0.07 deleterious(0) probably_damaging(0.995) TCGA-99-8028-01 6 51947219 51947219 C A PKHD1 Missense_Mutation p.L84F 0.04 tolerated(0.35) benign(0.035) TCGA-99-8028-01 7 100773869 100773869 G T SERPINE1 Missense_Mutation p.V147L 0.08 tolerated(0.1) benign(0.162) TCGA-99-8028-01 7 100839647 100839647 G T MOGAT3 Missense_Mutation p.S231Y 0.11 deleterious(0) probably_damaging(0.969) TCGA-99-8028-01 7 101921232 101921232 G T CUX1 Missense_Mutation p.A524S 0.13 tolerated(0.45) benign(0.096) TCGA-99-8028-01 7 105739719 105739719 T C SYPL1 Missense_Mutation p.I45V 0.14 deleterious(0.04) probably_damaging(0.977) TCGA-99-8028-01 7 114329992 114329992 G T FOXP2 3'UTR 0.04 TCGA-99-8028-01 7 128413798 128413798 G T OPN1SW Missense_Mutation p.H278N 0.11 tolerated(0.5) probably_damaging(0.999) TCGA-99-8028-01 7 128852331 128852331 C A SMO 3'UTR 0.09 TCGA-99-8028-01 7 129950768 129950768 A T CPA4 Missense_Mutation p.Q312L 0.10 deleterious(0) probably_damaging(1) TCGA-99-8028-01 7 133906639 133906639 G T LRGUK Missense_Mutation p.W651L 0.06 tolerated(1) benign(0.006) TCGA-99-8028-01 7 140301465 140301465 G T DENND2A Silent p.R245R 0.05 TCGA-99-8028-01 7 142626597 142626597 G T TRPV5 Missense_Mutation p.T138N 0.12 tolerated(0.21) benign(0.005) TCGA-99-8028-01 7 143657110 143657110 G T OR2F1 Missense_Mutation p.G16V 0.07 deleterious(0) probably_damaging(0.993) TCGA-99-8028-01 7 151093186 151093186 C A WDR86 Silent p.R134R 0.10 TCGA-99-8028-01 7 157926440 157926440 G C PTPRN2 Silent p.L495L 0.10 TCGA-99-8028-01 7 17379475 17379475 A G AHR Missense_Mutation p.T676A 0.10 tolerated_low_confidence(0.2) benign(0) TCGA-99-8028-01 7 18705981 18705981 T A HDAC9 Missense_Mutation p.V538E 0.11 tolerated(1) benign(0.005) TCGA-99-8028-01 7 21629022 21629022 G T DNAH11 Splice_Site p.X723_splice 0.06 TCGA-99-8028-01 7 23802461 23802461 G T STK31 Missense_Mutation p.Q445H 0.10 deleterious(0.03) benign(0.126) TCGA-99-8028-01 7 27205101 27205101 C A HOXA9 5'UTR 0.17 TCGA-99-8028-01 7 28527850 28527850 C A CREB5 Missense_Mutation p.P21T 0.11 deleterious(0) probably_damaging(0.998) TCGA-99-8028-01 7 41730074 41730074 C A INHBA Missense_Mutation p.R152L 0.11 deleterious(0) benign(0.209) TCGA-99-8028-01 7 57194302 57194302 G T ZNF479 Missense_Mutation p.L55M 0.05 deleterious(0) probably_damaging(0.999) TCGA-99-8028-01 7 71252835 71252835 G T CALN1 Nonsense_Mutation p.C237* 0.07 TCGA-99-8028-01 7 81372700 81372700 G T HGF Silent p.T278T 0.09 TCGA-99-8028-01 7 87104740 87104740 G T ABCB4 Silent p.P14P 0.10 TCGA-99-8028-01 7 88424219 88424219 C A C7orf62 Missense_Mutation p.R13M 0.15 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-99-8028-01 7 90741882 90741882 G T CDK14 Missense_Mutation p.D376Y 0.11 deleterious(0) possibly_damaging(0.684) TCGA-99-8028-01 7 92734185 92734185 T C SAMD9 Missense_Mutation p.Y409C 0.13 deleterious(0.01) probably_damaging(0.917) TCGA-99-8028-01 8 101076165 101076165 C A RGS22 Missense_Mutation p.E277D 0.11 tolerated(0.54) benign(0.004) TCGA-99-8028-01 8 10466209 10466209 C A RP1L1 Missense_Mutation p.R1800M 0.07 unknown(0) TCGA-99-8028-01 8 10470312 10470312 G C RP1L1 Silent p.V432V 0.09 TCGA-99-8028-01 8 104987670 104987670 C T RIMS2 Missense_Mutation p.P955S 0.12 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-99-8028-01 8 105456570 105456570 G T DPYS Silent p.A233A 0.12 TCGA-99-8028-01 8 107751701 107751701 G A OXR1 Missense_Mutation p.D686N 0.22 tolerated(0.07) benign(0.049) TCGA-99-8028-01 8 113349772 113349772 C A CSMD3 Missense_Mutation p.A2281S 0.18 deleterious(0.01) probably_damaging(0.955) TCGA-99-8028-01 8 113402933 113402933 C G CSMD3 Missense_Mutation p.C1965S 0.06 deleterious(0) probably_damaging(0.999) TCGA-99-8028-01 8 113484931 113484931 A T CSMD3 Missense_Mutation p.C1762S 0.22 deleterious(0.01) possibly_damaging(0.531) TCGA-99-8028-01 8 128429197 128429197 C A POU5F1B 3'UTR 0.15 TCGA-99-8028-01 8 140630863 140630863 G T KCNK9 Silent p.R255R 0.09 TCGA-99-8028-01 8 144941186 144941186 C A EPPK1 Missense_Mutation p.G2079V 0.14 probably_damaging(0.927) TCGA-99-8028-01 8 1581027 1581027 C T DLGAP2 Missense_Mutation p.S462F 0.13 deleterious(0) probably_damaging(0.993) TCGA-99-8028-01 8 22035099 22035099 G A BMP1 Intron 0.08 TCGA-99-8028-01 8 38899496 38899496 G T ADAM9 Nonsense_Mutation p.E388* 0.10 TCGA-99-8028-01 8 52321665 52321665 G T PXDNL Missense_Mutation p.P840H 0.09 deleterious(0.03) probably_damaging(0.964) TCGA-99-8028-01 8 55534108 55534108 T A RP1 Silent p.P194P 0.06 TCGA-99-8028-01 8 55541397 55541397 G T RP1 Missense_Mutation p.R1652L 0.15 deleterious(0.03) benign(0.011) TCGA-99-8028-01 8 75737501 75737501 C A PI15 Missense_Mutation p.A6D 0.13 tolerated_low_confidence(0.19) unknown(0) TCGA-99-8028-01 8 87393807 87393807 G C WWP1 Missense_Mutation p.G95R 0.12 deleterious(0) probably_damaging(1) TCGA-99-8028-01 8 87393808 87393808 G T WWP1 Missense_Mutation p.G95V 0.12 deleterious(0) probably_damaging(1) TCGA-99-8028-01 8 87738841 87738841 G T CNGB3 Missense_Mutation p.P86T 0.08 tolerated(0.07) benign(0.013) TCGA-99-8028-01 8 88885242 88885242 C A DCAF4L2 Missense_Mutation p.V320L 0.13 tolerated(1) benign(0.001) TCGA-99-8028-01 8 88885345 88885345 C G DCAF4L2 Silent p.L285L 0.11 TCGA-99-8028-01 8 89086900 89086900 C A MMP16 Missense_Mutation p.W385C 0.07 deleterious(0) probably_damaging(0.998) TCGA-99-8028-01 8 89131043 89131043 C A MMP16 Nonsense_Mutation p.G253* 0.12 TCGA-99-8028-01 8 93088193 93088193 C A RUNX1T1 Intron 0.06 TCGA-99-8028-01 8 97332499 97332499 G T PTDSS1 Missense_Mutation p.V367F 0.12 deleterious(0.02) probably_damaging(0.917) TCGA-99-8028-01 8 98078268 98078268 A G CPQ Missense_Mutation p.E362G 0.04 deleterious(0) probably_damaging(1) TCGA-99-8028-01 9 100126406 100126406 G A CCDC180 Missense_Mutation p.A1370T 0.06 tolerated(0.18) possibly_damaging(0.682) TCGA-99-8028-01 9 110084315 110084315 G T RAD23B Missense_Mutation p.A245S 0.07 tolerated(0.45) benign(0.082) TCGA-99-8028-01 9 111735093 111735093 C T CTNNAL1 Silent p.Q403Q 0.04 TCGA-99-8028-01 9 113169017 113169017 G A SVEP1 Missense_Mutation p.L2955F 0.05 possibly_damaging(0.678) TCGA-99-8028-01 9 125140827 125140827 G T PTGS1 Missense_Mutation p.E109D 0.06 tolerated(1) benign(0) TCGA-99-8028-01 9 125486718 125486718 C A OR1L4 Nonsense_Mutation p.C150* 0.06 TCGA-99-8028-01 9 130551528 130551528 G T CDK9 Silent p.V275V 0.07 TCGA-99-8028-01 9 135163713 135163713 C A SETX Missense_Mutation p.Q2078H 0.11 deleterious(0) probably_damaging(1) TCGA-99-8028-01 9 135982518 135982518 G A RALGDS Missense_Mutation p.A456V 0.05 tolerated(0.06) unknown(0) TCGA-99-8028-01 9 136245975 136245975 C A C9orf96 Silent p.V52V 0.08 TCGA-99-8028-01 9 136649542 136649542 T G VAV2 Splice_Site p.X511_splice 0.08 TCGA-99-8028-01 9 138379900 138379900 G T PPP1R26 Nonsense_Mutation p.E1182* 0.06 TCGA-99-8028-01 9 138585630 138585630 G T SOHLH1 Missense_Mutation p.P326H 0.25 deleterious(0) probably_damaging(0.979) TCGA-99-8028-01 9 138585631 138585631 G T SOHLH1 Missense_Mutation p.P326T 0.25 tolerated(0.1) probably_damaging(0.958) TCGA-99-8028-01 9 138707824 138707824 T C CAMSAP1 Missense_Mutation p.I1433M 0.05 tolerated(0.08) benign(0.017) TCGA-99-8028-01 9 32784185 32784185 C A TMEM215 Silent p.R2R 0.19 TCGA-99-8028-01 9 36122952 36122952 G T RECK Silent p.S942S 0.04 TCGA-99-8028-01 9 5089707 5089707 G A JAK2 Missense_Mutation p.D869N 0.09 deleterious(0) probably_damaging(0.989) TCGA-99-8028-01 9 78771982 78771982 G T PCSK5 Missense_Mutation p.G445V 0.10 deleterious(0) probably_damaging(0.975) TCGA-99-8028-01 9 78911708 78911708 G T PCSK5 Missense_Mutation p.Q1150H 0.12 tolerated(0.13) benign(0.005) TCGA-99-8028-01 9 8499760 8499760 G T PTPRD Missense_Mutation p.P737T 0.05 tolerated(0.06) benign(0.393) TCGA-99-8028-01 9 88953756 88953756 T C ZCCHC6 Silent p.A439A 0.07 TCGA-99-8028-01 9 91963091 91963091 G A SECISBP2 Missense_Mutation p.G567D 0.06 tolerated(0.47) possibly_damaging(0.616) TCGA-99-8028-01 X 100103702 100103702 G T NOX1 Silent p.I495I 0.04 TCGA-99-8028-01 X 100500401 100500401 G T DRP2 Missense_Mutation p.W380C 0.09 deleterious(0) probably_damaging(1) TCGA-99-8028-01 X 101092546 101092546 C A NXF5 Missense_Mutation p.D334Y 0.06 deleterious(0) probably_damaging(0.977) TCGA-99-8028-01 X 107938530 107938530 G T COL4A5 Missense_Mutation p.A1619S 0.08 probably_damaging(0.983) TCGA-99-8028-01 X 108926435 108926435 T C ACSL4 Missense_Mutation p.D94G 0.07 tolerated(0.36) possibly_damaging(0.493) TCGA-99-8028-01 X 125685302 125685302 C G DCAF12L1 Silent p.A430A 0.10 TCGA-99-8028-01 X 12904876 12904876 T G TLR7 Missense_Mutation p.F417V 0.10 deleterious(0.01) benign(0.057) TCGA-99-8028-01 X 12937818 12937818 T A TLR8 Missense_Mutation p.L220Q 0.14 deleterious(0) probably_damaging(1) TCGA-99-8028-01 X 134495020 134495020 G T ZNF449 3'UTR 0.05 TCGA-99-8028-01 X 135426804 135426804 T C GPR112 Silent p.F313F 0.10 TCGA-99-8028-01 X 148068913 148068913 G T AFF2 Missense_Mutation p.V1214L 0.06 tolerated(0.1) benign(0.004) TCGA-99-8028-01 X 152806815 152806815 A T ATP2B3 Splice_Site p.X70_splice 0.07 TCGA-99-8028-01 X 153135387 153135387 C A L1CAM Missense_Mutation p.A332S 0.10 tolerated(0.07) benign(0.356) TCGA-99-8028-01 X 153247658 153247658 C T TMEM187 Missense_Mutation p.P49S 0.04 tolerated(0.1) possibly_damaging(0.799) TCGA-99-8028-01 X 18600059 18600059 T A CDKL5 Missense_Mutation p.L151Q 0.03 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-99-8028-01 X 21861318 21861318 G A MBTPS2 Missense_Mutation p.D36N 0.04 tolerated(0.38) benign(0.008) TCGA-99-8028-01 X 22095665 22095665 C G PHEX Missense_Mutation p.L170V 0.09 tolerated(0.4) benign(0.24) TCGA-99-8028-01 X 37028454 37028454 G C FAM47C Missense_Mutation p.E657D 0.04 deleterious(0.01) possibly_damaging(0.64) TCGA-99-8028-01 X 47104297 47104297 G C USP11 Missense_Mutation p.R730P 0.08 tolerated(0.24) benign(0.167) TCGA-99-8028-01 X 54578157 54578157 G C GNL3L Missense_Mutation p.Q340H 0.10 tolerated(0.06) probably_damaging(0.946) TCGA-99-8028-01 X 54777684 54777684 C A ITIH6 Missense_Mutation p.R1161L 0.13 tolerated(0.74) benign(0.013) TCGA-99-8028-01 X 67454407 67454407 C G OPHN1 Missense_Mutation p.K136N 0.05 deleterious(0) probably_damaging(0.999) TCGA-99-8028-01 X 69748933 69748933 C A TEX11 3'UTR 0.11 TCGA-99-8028-01 X 70767810 70767810 T C OGT Silent p.S195S 0.06 TCGA-99-8028-01 X 73066011 73066011 C A XIST RNA 0.08 TCGA-99-8028-01 X 74318789 74318789 C A ABCB7 Missense_Mutation p.L148F 0.07 deleterious(0) probably_damaging(1) TCGA-99-8028-01 X 86880719 86880719 T C KLHL4 Missense_Mutation p.M416T 0.07 deleterious(0.03) benign(0.008) TCGA-99-8028-01 X 89177229 89177229 C A TGIF2LX Missense_Mutation p.H49N 0.10 tolerated(0.59) benign(0.033) TCGA-99-8032-01 10 102286804 102286804 G A NDUFB8 Silent p.D80D 0.15 TCGA-99-8032-01 10 102286806 102286806 C A NDUFB8 Missense_Mutation p.D80Y 0.15 deleterious(0) probably_damaging(0.969) TCGA-99-8032-01 10 111646061 111646061 T A XPNPEP1 Nonsense_Mutation p.K231* 0.22 TCGA-99-8032-01 10 118215251 118215251 C A PNLIPRP3 Silent p.S158S 0.11 TCGA-99-8032-01 10 118434621 118434621 C T HSPA12A Missense_Mutation p.V567I 0.14 tolerated(0.58) benign(0.034) TCGA-99-8032-01 10 125521564 125521564 C T CPXM2 Nonsense_Mutation p.W534* 0.23 TCGA-99-8032-01 10 134909203 134909203 C A GPR123 Intron 0.25 TCGA-99-8032-01 10 135371400 135371400 C T SYCE1 Silent p.L114L 0.21 TCGA-99-8032-01 10 50369589 50369589 G T C10orf128 Intron 0.33 TCGA-99-8032-01 10 55569225 55569225 T A PCDH15 Nonsense_Mutation p.K463* 0.28 TCGA-99-8032-01 10 70645798 70645798 G T STOX1 Missense_Mutation p.R749L 0.38 tolerated(0.47) benign(0.001) TCGA-99-8032-01 10 72518015 72518015 T C ADAMTS14 Missense_Mutation p.L1054P 0.05 tolerated(0.3) benign(0.003) TCGA-99-8032-01 10 73521421 73521421 C A C10orf54 Missense_Mutation p.V149L 0.29 tolerated(0.4) benign(0.022) TCGA-99-8032-01 10 75406449 75406449 C G SYNPO2L 3'UTR 0.14 TCGA-99-8032-01 10 88466390 88466390 G A LDB3 Intron 0.22 TCGA-99-8032-01 10 88768197 88768197 C G RP11-96C23.10 3'Flank 0.09 TCGA-99-8032-01 10 92680081 92680081 C T ANKRD1 Missense_Mutation p.G18R 0.24 tolerated(0.31) benign(0.002) TCGA-99-8032-01 10 93711298 93711298 C T BTAF1 Missense_Mutation p.S180L 0.16 tolerated(0.28) benign(0.005) TCGA-99-8032-01 10 98764458 98764458 G T SLIT1 Silent p.A1234A 0.17 TCGA-99-8032-01 11 100169914 100169914 G T CNTN5 Missense_Mutation p.Q802H 0.40 deleterious(0) probably_damaging(0.999) TCGA-99-8032-01 11 106647301 106647301 G T GUCY1A2 Missense_Mutation p.T567K 0.25 deleterious(0) probably_damaging(0.969) TCGA-99-8032-01 11 111747582 111747582 C A FDXACB1 Silent p.V161V 0.25 TCGA-99-8032-01 11 113286297 113286297 A T DRD2 Missense_Mutation p.V190E 0.18 deleterious(0) probably_damaging(0.97) TCGA-99-8032-01 11 113295381 113295381 G T DRD2 5'UTR 0.24 TCGA-99-8032-01 11 124766982 124766982 G T ROBO4 Silent p.L82L 0.16 TCGA-99-8032-01 11 16812603 16812603 C A PLEKHA7 Missense_Mutation p.R963S 0.29 deleterious(0) probably_damaging(0.999) TCGA-99-8032-01 11 16812604 16812604 C A PLEKHA7 Missense_Mutation p.R963M 0.30 deleterious(0) probably_damaging(0.999) TCGA-99-8032-01 11 18159842 18159842 C T MRGPRX3 3'UTR 0.29 TCGA-99-8032-01 11 18195060 18195060 G T MRGPRX4 Missense_Mutation p.R86L 0.29 tolerated(0.6) benign(0.001) TCGA-99-8032-01 11 18422524 18422524 C T LDHA Missense_Mutation p.P158S 0.08 deleterious(0.02) possibly_damaging(0.771) TCGA-99-8032-01 11 18422549 18422549 C G LDHA Nonsense_Mutation p.S166* 0.08 TCGA-99-8032-01 11 18955912 18955912 C A MRGPRX1 Silent p.A140A 0.14 TCGA-99-8032-01 11 20629027 20629027 T C SLC6A5 Missense_Mutation p.C272R 0.03 deleterious(0) probably_damaging(0.926) TCGA-99-8032-01 11 26664773 26664773 C G ANO3 Missense_Mutation p.L774V 0.04 deleterious(0) probably_damaging(0.934) TCGA-99-8032-01 11 26677675 26677675 C T ANO3 Silent p.C860C 0.16 TCGA-99-8032-01 11 3038339 3038339 C T CARS Silent p.L638L 0.10 TCGA-99-8032-01 11 33565039 33565039 T G KIAA1549L Missense_Mutation p.F347V 0.23 tolerated_low_confidence(0.43) benign(0.003) TCGA-99-8032-01 11 46407288 46407288 C A CHRM4 Nonsense_Mutation p.E274* 0.38 TCGA-99-8032-01 11 4703622 4703622 G T OR51E2 Nonsense_Mutation p.S107* 0.44 TCGA-99-8032-01 11 47774629 47774629 T A FNBP4 Missense_Mutation p.Q159L 0.44 deleterious(0.03) possibly_damaging(0.504) TCGA-99-8032-01 11 48347004 48347004 G A OR4C3 Missense_Mutation p.G171E 0.15 deleterious(0.04) possibly_damaging(0.856) TCGA-99-8032-01 11 4870006 4870006 T A OR51S1 Missense_Mutation p.T145S 0.24 deleterious(0.02) possibly_damaging(0.581) TCGA-99-8032-01 11 55032454 55032454 G - TRIM48 Frame_Shift_Del p.V42Sfs*3 0.13 TCGA-99-8032-01 11 55038409 55038409 C A TRIM48 3'UTR 0.11 TCGA-99-8032-01 11 55579114 55579114 C A OR5L1 Missense_Mutation p.P58T 0.25 deleterious(0.01) probably_damaging(1) TCGA-99-8032-01 11 55579559 55579559 A G OR5L1 Missense_Mutation p.N206S 0.29 tolerated(0.13) benign(0.259) TCGA-99-8032-01 11 56950055 56950055 G T LRRC55 Missense_Mutation p.G230W 0.19 deleterious(0) probably_damaging(0.998) TCGA-99-8032-01 11 57507689 57507689 C T TMX2 Missense_Mutation p.S288L 0.27 deleterious_low_confidence(0.04) benign(0.025) TCGA-99-8032-01 11 5776267 5776267 C G OR52N4 Missense_Mutation p.C99W 0.05 deleterious(0) probably_damaging(1) TCGA-99-8032-01 11 5905708 5905708 C T OR52E4 Silent p.F62F 0.33 TCGA-99-8032-01 11 59224661 59224661 C A OR4D6 Silent p.I76I 0.29 TCGA-99-8032-01 11 59556354 59556354 G C STX3 Missense_Mutation p.D75H 0.24 deleterious(0.04) possibly_damaging(0.897) TCGA-99-8032-01 11 62286994 62286994 G A AHNAK Silent p.I4965I 0.19 TCGA-99-8032-01 11 62302641 62302641 G A AHNAK Missense_Mutation p.T59I 0.25 probably_damaging(0.987) TCGA-99-8032-01 11 64536951 64536951 G A SF1 Missense_Mutation p.H329Y 0.33 deleterious(0) probably_damaging(0.993) TCGA-99-8032-01 11 66191995 66191995 C A NPAS4 Missense_Mutation p.P545H 0.33 deleterious(0.01) probably_damaging(0.962) TCGA-99-8032-01 11 6913209 6913209 C A OR2D2 Missense_Mutation p.A175S 0.10 tolerated(0.07) benign(0.014) TCGA-99-8032-01 11 75438611 75438611 T A MOGAT2 Silent p.G134G 0.25 TCGA-99-8032-01 11 75438612 75438612 A T MOGAT2 Missense_Mutation p.I135F 0.25 tolerated(0.3) possibly_damaging(0.836) TCGA-99-8032-01 11 76372200 76372200 C A LRRC32 Missense_Mutation p.G146V 0.28 tolerated(0.17) benign(0.281) TCGA-99-8032-01 11 89936515 89936515 T A CHORDC1 Silent p.S250S 0.14 TCGA-99-8032-01 12 109283320 109283320 G T DAO Missense_Mutation p.G129C 0.21 deleterious(0.04) benign(0.329) TCGA-99-8032-01 12 115118728 115118728 G T TBX3 Missense_Mutation p.H205N 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-99-8032-01 12 124862806 124862806 T A NCOR2 Missense_Mutation p.E715V 0.09 unknown(0) TCGA-99-8032-01 12 132474620 132474620 A G EP400 Missense_Mutation p.I841V 0.32 unknown(0) TCGA-99-8032-01 12 14849271 14849271 T G GUCY2C Missense_Mutation p.S38R 0.12 deleterious(0.01) benign(0.349) TCGA-99-8032-01 12 21015716 21015716 G T SLCO1B3 Missense_Mutation p.G219C 0.28 deleterious(0) probably_damaging(1) TCGA-99-8032-01 12 24736745 24736745 C T LINC00477 RNA 0.11 TCGA-99-8032-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.18 deleterious(0.04) probably_damaging(0.993) TCGA-99-8032-01 12 31116783 31116783 C A TSPAN11 Missense_Mutation p.A36D 0.16 deleterious(0) probably_damaging(0.984) TCGA-99-8032-01 12 3126660 3126660 G T TEAD4 Missense_Mutation p.A151S 0.18 tolerated(0.66) benign(0.004) TCGA-99-8032-01 12 33538176 33538176 C A SYT10 Silent p.T376T 0.18 TCGA-99-8032-01 12 43847849 43847849 G A ADAMTS20 Missense_Mutation p.R541C 0.45 deleterious(0.02) possibly_damaging(0.828) TCGA-99-8032-01 12 44913867 44913867 A T NELL2 Missense_Mutation p.L824Q 0.16 tolerated(0.34) probably_damaging(0.91) TCGA-99-8032-01 12 46254604 46254604 A T ARID2 Silent p.S1598S 0.10 TCGA-99-8032-01 12 4829957 4829957 G T GALNT8 Silent p.T38T 0.35 TCGA-99-8032-01 12 4848478 4848478 A G GALNT8 Missense_Mutation p.D220G 0.42 deleterious(0) probably_damaging(0.964) TCGA-99-8032-01 12 5021141 5021141 G - KCNA1 Frame_Shift_Del p.G200Afs*55 0.11 TCGA-99-8032-01 12 52565216 52565216 T G KRT80 Missense_Mutation p.K442T 0.04 deleterious(0.01) benign(0.154) TCGA-99-8032-01 12 54964027 54964027 C G PDE1B Missense_Mutation p.N160K 0.06 tolerated(0.15) benign(0.007) TCGA-99-8032-01 12 57398632 57398632 G A ZBTB39 Missense_Mutation p.R24W 0.28 deleterious(0) probably_damaging(0.999) TCGA-99-8032-01 12 63543820 63543820 A G AVPR1A Missense_Mutation p.F266S 0.24 tolerated(0.44) benign(0.007) TCGA-99-8032-01 12 72338365 72338365 G T TPH2 Splice_Site p.X147_splice 0.31 TCGA-99-8032-01 12 81102749 81102749 C T MYF6 3'UTR 0.31 TCGA-99-8032-01 12 8375101 8375101 G A FAM90A1 Nonsense_Mutation p.R238* 0.12 TCGA-99-8032-01 12 88584315 88584315 A C TMTC3 Missense_Mutation p.N541T 0.30 deleterious(0.04) benign(0.087) TCGA-99-8032-01 13 108862241 108862241 A G LIG4 Missense_Mutation p.M459T 0.02 tolerated(0.06) benign(0.001) TCGA-99-8032-01 13 113477682 113477682 T A ATP11A Missense_Mutation p.L250Q 0.35 deleterious(0) probably_damaging(0.996) TCGA-99-8032-01 13 32913113 32913113 A G BRCA2 Missense_Mutation p.K1541E 0.22 deleterious(0) probably_damaging(0.994) TCGA-99-8032-01 13 51918540 51918540 A T SERPINE3 Missense_Mutation p.S137C 0.33 tolerated(0.07) possibly_damaging(0.648) TCGA-99-8032-01 13 53313202 53313202 G T LECT1 Silent p.I59I 0.36 TCGA-99-8032-01 13 70681609 70681609 A T KLHL1 Missense_Mutation p.S75T 0.22 tolerated_low_confidence(0.58) benign(0.006) TCGA-99-8032-01 13 96237027 96237027 G T DZIP1 Silent p.A829A 0.10 TCGA-99-8032-01 14 22434157 22434157 G T TRAV12-3 Missense_Mutation p.M70I 0.11 tolerated(1) benign(0.002) TCGA-99-8032-01 14 22434160 22434160 C T TRAV12-3 Silent p.Y71Y 0.11 TCGA-99-8032-01 14 23597256 23597256 G T SLC7A8 Missense_Mutation p.H471Q 0.35 tolerated(0.12) benign(0.002) TCGA-99-8032-01 14 23894195 23894195 A G MYH7 Missense_Mutation p.F821S 0.28 deleterious(0) probably_damaging(1) TCGA-99-8032-01 14 31849705 31849705 C A HEATR5A Missense_Mutation p.G266V 0.21 deleterious(0) probably_damaging(0.915) TCGA-99-8032-01 14 51370853 51370853 C G ABHD12B Missense_Mutation p.P335R 0.03 deleterious(0.05) probably_damaging(1) TCGA-99-8032-01 14 74824136 74824136 C A VRTN Missense_Mutation p.T217K 0.28 deleterious(0) possibly_damaging(0.806) TCGA-99-8032-01 14 88895776 88895776 A T SPATA7 Nonsense_Mutation p.K333* 0.25 TCGA-99-8032-01 14 88895778 88895778 G T SPATA7 Missense_Mutation p.K333N 0.25 deleterious(0.01) possibly_damaging(0.837) TCGA-99-8032-01 15 101924557 101924557 C A PCSK6 Missense_Mutation p.D461Y 0.19 deleterious(0) probably_damaging(1) TCGA-99-8032-01 15 23811323 23811323 G T MKRN3 Missense_Mutation p.V132F 0.29 tolerated(0.69) benign(0.216) TCGA-99-8032-01 15 25332861 25332861 G T SNORD116-20 RNA 0.09 TCGA-99-8032-01 15 27128648 27128648 C A GABRA5 Silent p.T147T 0.14 TCGA-99-8032-01 15 43378282 43378282 C T UBR1 Missense_Mutation p.G80R 0.30 tolerated(0.11) benign(0.077) TCGA-99-8032-01 15 48056493 48056493 C A SEMA6D Missense_Mutation p.P363Q 0.33 deleterious(0) probably_damaging(1) TCGA-99-8032-01 15 62302673 62302673 G A VPS13C Nonsense_Mutation p.Q337* 0.37 TCGA-99-8032-01 15 67482863 67482863 A C SMAD3 Missense_Mutation p.S423R 0.27 deleterious(0) probably_damaging(0.933) TCGA-99-8032-01 15 68583191 68583191 G A FEM1B Missense_Mutation p.D499N 0.27 tolerated(0.05) probably_damaging(0.999) TCGA-99-8032-01 15 70347516 70347516 C - TLE3 Frame_Shift_Del p.E487Rfs*6 0.33 TCGA-99-8032-01 15 89011140 89011140 A T MRPS11 Missense_Mutation p.R23W 0.12 deleterious_low_confidence(0) possibly_damaging(0.781) TCGA-99-8032-01 15 90039789 90039789 C A RHCG 5'UTR 0.46 TCGA-99-8032-01 16 12146024 12146024 G T SNX29 Missense_Mutation p.V357L 0.24 tolerated_low_confidence(0.46) benign(0.003) TCGA-99-8032-01 16 1306312 1306312 C T TPSD1 Silent p.L11L 0.21 TCGA-99-8032-01 16 24372760 24372760 A G CACNG3 Missense_Mutation p.Y175C 0.18 deleterious(0) probably_damaging(1) TCGA-99-8032-01 16 30012745 30012745 C T INO80E Missense_Mutation p.S136F 0.31 deleterious(0.01) benign(0.067) TCGA-99-8032-01 16 30536853 30536853 C G ZNF768 Missense_Mutation p.G203A 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.487) TCGA-99-8032-01 16 30735499 30735499 C A SRCAP Missense_Mutation p.T1585N 0.13 benign(0.403) TCGA-99-8032-01 16 31408780 31408780 C G ITGAD Missense_Mutation p.H80D 0.23 deleterious(0.04) benign(0.005) TCGA-99-8032-01 16 49670364 49670364 A T ZNF423 Missense_Mutation p.L900Q 0.24 deleterious(0) probably_damaging(0.979) TCGA-99-8032-01 16 49670418 49670418 G A ZNF423 Missense_Mutation p.S882L 0.25 deleterious(0.01) benign(0.072) TCGA-99-8032-01 16 58705099 58705099 C A SLC38A7 Nonsense_Mutation p.E361* 0.08 TCGA-99-8032-01 16 58705100 58705100 C T SLC38A7 Silent p.E360E 0.09 TCGA-99-8032-01 16 68107935 68107935 A T DUS2 Splice_Site p.X271_splice 0.14 TCGA-99-8032-01 16 683127 683127 C G WFIKKN1 Missense_Mutation p.N239K 0.08 deleterious(0) probably_damaging(0.999) TCGA-99-8032-01 16 69404452 69404452 G C TERF2 Silent p.T216T 0.15 TCGA-99-8032-01 16 711452 711452 C T WDR90 Silent p.T1208T 0.12 TCGA-99-8032-01 16 718356 718356 A T RHOT2 Missense_Mutation p.Q14L 0.21 deleterious(0.04) benign(0.1) TCGA-99-8032-01 16 81056210 81056210 A T CENPN Silent p.T180T 0.14 TCGA-99-8032-01 17 10216544 10216544 T A MYH13 Missense_Mutation p.E1371V 0.25 deleterious(0) benign(0.185) TCGA-99-8032-01 17 10323357 10323357 G A MYH8 Missense_Mutation p.T63I 0.25 tolerated(0.17) probably_damaging(0.945) TCGA-99-8032-01 17 10395748 10395748 G A MYH1 Silent p.I1935I 0.18 TCGA-99-8032-01 17 11631206 11631206 C T DNAH9 Silent p.I1927I 0.17 TCGA-99-8032-01 17 11757540 11757540 C G DNAH9 Missense_Mutation p.P3243R 0.21 possibly_damaging(0.693) TCGA-99-8032-01 17 11757643 11757643 G C DNAH9 Missense_Mutation p.E3277D 0.19 benign(0.02) TCGA-99-8032-01 17 11757677 11757677 C G DNAH9 Missense_Mutation p.L3289V 0.21 possibly_damaging(0.85) TCGA-99-8032-01 17 15443732 15443732 C A TVP23C Intron 0.14 TCGA-99-8032-01 17 16469845 16469845 C A ZNF287 Silent p.V165V 0.25 TCGA-99-8032-01 17 18111594 18111594 C T ALKBH5 Missense_Mutation p.R357W 0.29 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-99-8032-01 17 21731496 21731496 G T UBBP4 Missense_Mutation p.D191Y 0.25 tolerated(0.08) probably_damaging(0.982) TCGA-99-8032-01 17 28612480 28612480 G A BLMH Nonsense_Mutation p.R191* 0.05 TCGA-99-8032-01 17 33520735 33520735 G T SLC35G3 Missense_Mutation p.L198M 0.19 tolerated(0.44) benign(0.069) TCGA-99-8032-01 17 33802349 33802349 G A SLFN12L Nonsense_Mutation p.Q454* 0.23 TCGA-99-8032-01 17 37673787 37673787 C T CDK12 Missense_Mutation p.R981C 0.18 probably_damaging(0.999) TCGA-99-8032-01 17 38910715 38910715 G A KRT25 Silent p.I145I 0.21 TCGA-99-8032-01 17 39644573 39644573 G T KRT36 Silent p.T207T 0.27 TCGA-99-8032-01 17 39739564 39739564 C A KRT14 Missense_Mutation p.K399N 0.24 tolerated(0.08) benign(0.104) TCGA-99-8032-01 17 41369735 41369735 A T TMEM106A Missense_Mutation p.E235V 0.29 deleterious(0) probably_damaging(0.979) TCGA-99-8032-01 17 51900439 51900439 C A KIF2B Silent p.P15P 0.12 TCGA-99-8032-01 17 51900785 51900785 C A KIF2B Missense_Mutation p.L131M 0.23 tolerated(0.2) possibly_damaging(0.472) TCGA-99-8032-01 17 5421149 5421149 A G NLRP1 Missense_Mutation p.V1325A 0.24 tolerated(0.13) possibly_damaging(0.479) TCGA-99-8032-01 17 56357807 56357807 C T MPO Silent p.E56E 0.25 TCGA-99-8032-01 17 59489513 59489513 C A C17orf82 Missense_Mutation p.S59R 0.22 deleterious_low_confidence(0) possibly_damaging(0.654) TCGA-99-8032-01 17 61735166 61735166 C G MAP3K3 Missense_Mutation p.L125V 0.24 tolerated(0.05) benign(0.169) TCGA-99-8032-01 17 65103614 65103614 T A HELZ Missense_Mutation p.S1638C 0.08 deleterious_low_confidence(0.04) unknown(0) TCGA-99-8032-01 17 663366 663366 G - GLOD4 3'UTR 0.22 TCGA-99-8032-01 17 67303001 67303001 C A ABCA5 Missense_Mutation p.R218L 0.20 tolerated(0.41) probably_damaging(0.95) TCGA-99-8032-01 17 7077487 7077487 G T ASGR1 Missense_Mutation p.H188Q 0.09 deleterious(0.04) possibly_damaging(0.883) TCGA-99-8032-01 17 7137472 7137472 C A DVL2 Missense_Mutation p.R37L 0.21 tolerated(0.13) possibly_damaging(0.738) TCGA-99-8032-01 17 73258723 73258723 G C MRPS7 Missense_Mutation p.A77P 0.08 tolerated(0.06) possibly_damaging(0.658) TCGA-99-8032-01 17 7557992 7557992 G A ATP1B2 Missense_Mutation p.C200Y 0.18 deleterious(0) possibly_damaging(0.834) TCGA-99-8032-01 17 76392437 76392437 C T PGS1 Silent p.L128L 0.19 TCGA-99-8032-01 17 77709420 77709420 G T ENPP7 Missense_Mutation p.R326S 0.04 deleterious(0) probably_damaging(0.981) TCGA-99-8032-01 17 8139594 8139594 G A CTC1 Nonsense_Mutation p.R287* 0.10 TCGA-99-8032-01 18 29055649 29055649 C A DSG3 Missense_Mutation p.A809E 0.19 deleterious(0.01) benign(0.109) TCGA-99-8032-01 18 43422117 43422117 C A SIGLEC15 Missense_Mutation p.P318T 0.24 deleterious_low_confidence(0.02) benign(0.172) TCGA-99-8032-01 18 52901794 52901795 GG - TCF4 Frame_Shift_Del p.Q593Gfs*21 0.09 TCGA-99-8032-01 18 59217332 59217332 G T CDH20 Silent p.L590L 0.28 TCGA-99-8032-01 18 61261683 61261683 G A SERPINB13 Silent p.R189R 0.24 TCGA-99-8032-01 18 61620716 61620716 G T HMSD Missense_Mutation p.M9I 0.15 deleterious(0) probably_damaging(0.994) TCGA-99-8032-01 18 9258529 9258529 C G ANKRD12 Missense_Mutation p.T1755R 0.18 deleterious(0.03) benign(0.323) TCGA-99-8032-01 19 1219355 1219355 T A STK11 Missense_Mutation p.M136K 0.50 deleterious(0) possibly_damaging(0.866) TCGA-99-8032-01 19 1219356 1219356 G T STK11 Missense_Mutation p.M136I 0.50 tolerated(0.06) benign(0.051) TCGA-99-8032-01 19 13340930 13340930 C A CACNA1A Missense_Mutation p.V1832L 0.22 benign(0.315) TCGA-99-8032-01 19 22362709 22362709 A G ZNF676 3'UTR 0.73 TCGA-99-8032-01 19 22362821 22362821 A T ZNF676 Nonsense_Mutation p.C566* 0.09 TCGA-99-8032-01 19 22375858 22375858 G T ZNF676 Silent p.P30P 0.07 TCGA-99-8032-01 19 35996649 35996649 C A DMKN Missense_Mutation p.G369C 0.10 deleterious(0) unknown(0) TCGA-99-8032-01 19 37239983 37239983 G T ZNF850 Silent p.A653A 0.24 TCGA-99-8032-01 19 37676193 37676193 C A ZNF585B Missense_Mutation p.G749V 0.25 tolerated(0.2) benign(0.001) TCGA-99-8032-01 19 40362933 40362933 C T FCGBP Missense_Mutation p.S5046N 0.14 benign(0.241) TCGA-99-8032-01 19 43680113 43680113 A T PSG5 Missense_Mutation p.S206R 0.21 tolerated(0.43) benign(0.072) TCGA-99-8032-01 19 44679174 44679174 G C ZNF226 Intron 0.10 TCGA-99-8032-01 19 44679175 44679175 G T ZNF226 Intron 0.10 TCGA-99-8032-01 19 44932550 44932550 C T ZNF229 Silent p.G802G 0.30 TCGA-99-8032-01 19 51466592 51466592 G A KLK6 Silent p.S137S 0.36 TCGA-99-8032-01 19 51960979 51960979 G T SIGLEC8 Missense_Mutation p.P157T 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-99-8032-01 19 51983761 51983761 A T CEACAM18 Missense_Mutation p.H137L 0.12 deleterious(0.01) benign(0) TCGA-99-8032-01 19 51995080 51995080 G T SIGLEC12 Missense_Mutation p.P535T 0.36 tolerated(0.51) benign(0.008) TCGA-99-8032-01 19 52130939 52130939 C G SIGLEC5 Missense_Mutation p.C353S 0.28 deleterious(0) probably_damaging(1) TCGA-99-8032-01 19 53960356 53960356 G C ZNF761 RNA 0.46 TCGA-99-8032-01 19 55144591 55144591 G T LILRB1 Silent p.G361G 0.23 TCGA-99-8032-01 19 55144760 55144760 G T LILRB1 Missense_Mutation p.V418L 0.32 tolerated(0.64) benign(0.006) TCGA-99-8032-01 19 55331266 55331266 C A KIR3DL1 Missense_Mutation p.H152N 0.07 tolerated(0.45) benign(0.112) TCGA-99-8032-01 19 55494118 55494118 C T NLRP2 Missense_Mutation p.P351L 0.14 deleterious(0) probably_damaging(1) TCGA-99-8032-01 19 57176365 57176365 C A ZNF835 Missense_Mutation p.A68S 0.13 tolerated(0.59) benign(0.005) TCGA-99-8032-01 19 57286106 57286107 - T ZIM2 Frame_Shift_Ins p.H512Tfs*12 0.21 TCGA-99-8032-01 19 5787307 5787307 C A DUS3L Missense_Mutation p.Q426H 0.31 tolerated(0.07) benign(0.033) TCGA-99-8032-01 19 58115697 58115697 G T ZNF530 Missense_Mutation p.W28L 0.24 deleterious(0) probably_damaging(0.992) TCGA-99-8032-01 19 7806527 7806527 G A CD209 3'UTR 0.03 TCGA-99-8032-01 19 9451817 9451817 A C ZNF559 Missense_Mutation p.Q67P 0.15 deleterious(0.04) possibly_damaging(0.507) TCGA-99-8032-01 1 109897034 109897034 C T SORT1 Missense_Mutation p.M221I 0.17 tolerated(0.48) benign(0) TCGA-99-8032-01 1 11008829 11008830 - G C1orf127 Frame_Shift_Ins p.R455Qfs*39 0.09 TCGA-99-8032-01 1 111996840 111996840 C T ATP5F1 Nonsense_Mutation p.Q29* 0.20 TCGA-99-8032-01 1 11249525 11249525 C A ANGPTL7 5'UTR 0.08 TCGA-99-8032-01 1 13001263 13001263 C G PRAMEF6 Missense_Mutation p.R140S 0.06 tolerated(0.17) benign(0.015) TCGA-99-8032-01 1 144598647 144598647 G A RP11-640M9.2 RNA 0.07 TCGA-99-8032-01 1 145039601 145039601 C A PDE4DIP Missense_Mutation p.Q3H 0.04 deleterious_low_confidence(0) unknown(0) TCGA-99-8032-01 1 149921568 149921568 C A OTUD7B Missense_Mutation p.V363L 0.14 deleterious(0) probably_damaging(0.992) TCGA-99-8032-01 1 152128587 152128587 G T RPTN Missense_Mutation p.H330N 0.24 tolerated(0.07) possibly_damaging(0.552) TCGA-99-8032-01 1 153409561 153409561 C A S100A7L2 Silent p.V104V 0.09 TCGA-99-8032-01 1 153745769 153745769 C T INTS3 3'UTR 0.11 TCGA-99-8032-01 1 154458442 154458442 G A SHE Silent p.N426N 0.19 TCGA-99-8032-01 1 155059072 155059072 G T EFNA3 3'UTR 0.27 TCGA-99-8032-01 1 155724193 155724193 C A GON4L Missense_Mutation p.R1868S 0.09 deleterious(0.04) benign(0.402) TCGA-99-8032-01 1 156917203 156917203 C T ARHGEF11 Missense_Mutation p.R794Q 0.20 deleterious(0) probably_damaging(0.938) TCGA-99-8032-01 1 158576395 158576395 A T OR10Z1 Missense_Mutation p.H56L 0.20 deleterious(0) probably_damaging(0.991) TCGA-99-8032-01 1 158632582 158632582 G C SPTA1 Missense_Mutation p.L792V 0.07 tolerated(0.53) benign(0.073) TCGA-99-8032-01 1 160523821 160523821 C A CD84 Missense_Mutation p.W168C 0.09 deleterious(0) probably_damaging(1) TCGA-99-8032-01 1 160523822 160523822 C A CD84 Missense_Mutation p.W168L 0.09 deleterious(0) probably_damaging(1) TCGA-99-8032-01 1 168665749 168665749 G A DPT 3'UTR 0.21 TCGA-99-8032-01 1 169524574 169524574 C A F5 Missense_Mutation p.A322S 0.20 deleterious(0.01) probably_damaging(0.936) TCGA-99-8032-01 1 17395760 17395760 C T PADI2 Missense_Mutation p.V593M 0.17 deleterious(0) probably_damaging(0.984) TCGA-99-8032-01 1 176738909 176738909 C G PAPPA2 Missense_Mutation p.A1497G 0.16 deleterious(0) probably_damaging(0.997) TCGA-99-8032-01 1 176738910 176738910 C T PAPPA2 Silent p.A1497A 0.16 TCGA-99-8032-01 1 179520478 179520478 G A NPHS2 Nonsense_Mutation p.Q328* 0.23 TCGA-99-8032-01 1 179520514 179520514 G C NPHS2 Missense_Mutation p.P316A 0.24 deleterious(0) probably_damaging(0.999) TCGA-99-8032-01 1 186062343 186062343 C A HMCN1 Missense_Mutation p.T3322N 0.07 benign(0.287) TCGA-99-8032-01 1 19166641 19166641 C T TAS1R2 Missense_Mutation p.A658T 0.14 deleterious(0.01) benign(0.105) TCGA-99-8032-01 1 192998709 192998709 C - UCHL5 Frame_Shift_Del p.E109Rfs*17 0.18 TCGA-99-8032-01 1 196964992 196964992 T A CFHR5 Nonsense_Mutation p.C251* 0.36 TCGA-99-8032-01 1 197168592 197168592 C A ZBTB41 Missense_Mutation p.G338C 0.08 tolerated(0.12) benign(0.302) TCGA-99-8032-01 1 197704924 197704924 C G DENND1B Intron 0.31 TCGA-99-8032-01 1 197898254 197898254 C T LHX9 Silent p.L353L 0.10 TCGA-99-8032-01 1 198247150 198247150 G T NEK7 Missense_Mutation p.Q144H 0.04 deleterious(0.01) possibly_damaging(0.611) TCGA-99-8032-01 1 200968555 200968555 C A KIF21B Nonsense_Mutation p.E603* 0.23 TCGA-99-8032-01 1 200969639 200969639 C T KIF21B Missense_Mutation p.A522T 0.30 tolerated(0.29) benign(0) TCGA-99-8032-01 1 214706071 214706071 C A PTPN14 Intron 0.18 TCGA-99-8032-01 1 214813740 214813740 G T CENPF Missense_Mutation p.D687Y 0.24 probably_damaging(0.996) TCGA-99-8032-01 1 215931992 215931992 T A USH2A Silent p.P3778P 0.25 TCGA-99-8032-01 1 221912767 221912767 C G DUSP10 Missense_Mutation p.G107A 0.33 tolerated_low_confidence(0.58) benign(0.007) TCGA-99-8032-01 1 223949949 223949949 G T CAPN2 Missense_Mutation p.G543V 0.20 deleterious(0) probably_damaging(0.999) TCGA-99-8032-01 1 227935689 227935689 G A SNAP47 Silent p.R129R 0.21 TCGA-99-8032-01 1 231131630 231131631 - T ARV1 Frame_Shift_Ins p.L192Ffs*11 0.24 TCGA-99-8032-01 1 236966853 236966853 C T MTR Nonsense_Mutation p.Q54* 0.35 TCGA-99-8032-01 1 236973820 236973820 G T MTR Missense_Mutation p.A143S 0.16 deleterious(0.01) probably_damaging(0.981) TCGA-99-8032-01 1 237713890 237713890 T C RYR2 Missense_Mutation p.L1038P 0.14 benign(0.333) TCGA-99-8032-01 1 237713891 237713891 G T RYR2 Silent p.L1038L 0.14 TCGA-99-8032-01 1 247737464 247737464 G C GCSAML Missense_Mutation p.G63A 0.22 tolerated(0.08) probably_damaging(0.996) TCGA-99-8032-01 1 247752038 247752038 A C OR2G2 Missense_Mutation p.Y126S 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-99-8032-01 1 248458497 248458497 G T OR2T12 Silent p.L128L 0.17 TCGA-99-8032-01 1 248487365 248487365 C A OR2M7 Missense_Mutation p.C169F 0.14 deleterious(0) probably_damaging(0.977) TCGA-99-8032-01 1 248790325 248790325 G T OR2T11 Silent p.A35A 0.34 TCGA-99-8032-01 1 3417646 3417646 C A MEGF6 Missense_Mutation p.G820V 0.12 deleterious(0) probably_damaging(0.999) TCGA-99-8032-01 1 35370233 35370233 C A DLGAP3 Missense_Mutation p.G251V 0.31 tolerated(0.08) possibly_damaging(0.521) TCGA-99-8032-01 1 44435873 44435873 C G DPH2 Missense_Mutation p.A9G 0.14 tolerated(0.83) benign(0.011) TCGA-99-8032-01 1 52810614 52810614 C A ZFYVE9 Missense_Mutation p.Q1372K 0.21 tolerated(0.11) probably_damaging(0.99) TCGA-99-8032-01 1 71512441 71512441 C A PTGER3 Missense_Mutation p.G274C 0.08 deleterious(0.05) probably_damaging(0.992) TCGA-99-8032-01 1 84543974 84543974 C T RP11-486G15.2 5'Flank 0.17 TCGA-99-8032-01 1 86964328 86964328 C T CLCA1 Silent p.S729S 0.29 TCGA-99-8032-01 20 10030076 10030076 C G ANKEF1 Missense_Mutation p.P287A 0.22 tolerated(0.09) benign(0.194) TCGA-99-8032-01 20 23017214 23017214 C T SSTR4 Missense_Mutation p.P365L 0.29 deleterious(0.01) benign(0.347) TCGA-99-8032-01 20 25059522 25059522 A G VSX1 Silent p.D190D 0.24 TCGA-99-8032-01 20 30347911 30347911 G T TPX2 Missense_Mutation p.G53V 0.16 tolerated(0.26) possibly_damaging(0.486) TCGA-99-8032-01 20 34079134 34079134 C T CEP250 Silent p.L951L 0.22 TCGA-99-8032-01 20 36641192 36641192 C A TTI1 Nonsense_Mutation p.E343* 0.25 TCGA-99-8032-01 20 36952395 36952395 G T BPI Missense_Mutation p.G298W 0.22 deleterious(0.02) probably_damaging(0.917) TCGA-99-8032-01 20 36952396 36952396 G T BPI Missense_Mutation p.G298V 0.22 deleterious(0.03) possibly_damaging(0.845) TCGA-99-8032-01 20 39992362 39992362 C A EMILIN3 Nonsense_Mutation p.E144* 0.24 TCGA-99-8032-01 20 40980875 40980875 G C PTPRT Missense_Mutation p.S537R 0.31 tolerated(0.21) benign(0.005) TCGA-99-8032-01 20 44594382 44594382 C A ZNF335 Missense_Mutation p.E329D 0.25 tolerated(0.31) benign(0.103) TCGA-99-8032-01 20 46307442 46307442 C G SULF2 Missense_Mutation p.D391H 0.05 deleterious(0.05) probably_damaging(0.981) TCGA-99-8032-01 20 47324938 47324938 C T PREX1 Missense_Mutation p.G215S 0.22 tolerated(0.6) benign(0.037) TCGA-99-8032-01 20 5566845 5566845 G A GPCPD1 Missense_Mutation p.P101L 0.08 deleterious(0) probably_damaging(0.999) TCGA-99-8032-01 20 60509135 60509135 C A CDH4 Missense_Mutation p.Q801K 0.26 deleterious(0.03) benign(0.276) TCGA-99-8032-01 20 61511551 61511551 G T DIDO1 Silent p.P1919P 0.26 TCGA-99-8032-01 20 61511598 61511598 G C DIDO1 Missense_Mutation p.R1904G 0.25 probably_damaging(0.998) TCGA-99-8032-01 20 61990972 61990972 G T CHRNA4 Silent p.S52S 0.25 TCGA-99-8032-01 21 10942712 10942712 T A TPTE Silent p.T243T 0.13 TCGA-99-8032-01 21 10970059 10970059 T A TPTE Silent p.P23P 0.09 TCGA-99-8032-01 21 15884770 15884770 G T SAMSN1 Nonsense_Mutation p.S203* 0.28 TCGA-99-8032-01 21 31709534 31709534 G A KRTAP27-1 Silent p.F151F 0.30 TCGA-99-8032-01 21 33651113 33651113 C A MIS18A Missense_Mutation p.E71D 0.44 tolerated(0.15) benign(0.218) TCGA-99-8032-01 22 16267015 16267015 A T POTEH Missense_Mutation p.N478K 0.03 tolerated(0.14) benign(0.118) TCGA-99-8032-01 22 19183810 19183810 C A CLTCL1 Missense_Mutation p.W1386C 0.12 deleterious(0) probably_damaging(1) TCGA-99-8032-01 22 19883051 19883051 C A TXNRD2 Silent p.L276L 0.26 TCGA-99-8032-01 22 23626286 23626286 G A BCR Splice_Site p.X746_splice 0.08 TCGA-99-8032-01 22 24919673 24919673 G T UPB1 Missense_Mutation p.D335Y 0.25 deleterious(0) probably_damaging(0.997) TCGA-99-8032-01 22 39822784 39822784 G C TAB1 Missense_Mutation p.R333P 0.20 deleterious(0) probably_damaging(0.999) TCGA-99-8032-01 22 39996625 39996625 G T CACNA1I Missense_Mutation p.W150L 0.15 deleterious(0) possibly_damaging(0.892) TCGA-99-8032-01 22 41642642 41642642 G A RANGAP1 Missense_Mutation p.R577C 0.43 deleterious(0) probably_damaging(0.996) TCGA-99-8032-01 2 113942965 113942965 G T PSD4 Missense_Mutation p.W399C 0.21 tolerated_low_confidence(0.08) benign(0.023) TCGA-99-8032-01 2 125192089 125192089 A T CNTNAP5 Silent p.R186R 0.22 TCGA-99-8032-01 2 136605726 136605726 C T MCM6 Silent p.R650R 0.13 TCGA-99-8032-01 2 139428595 139428595 A T NXPH2 Missense_Mutation p.I231N 0.21 deleterious(0) probably_damaging(1) TCGA-99-8032-01 2 141115658 141115658 C A LRP1B Missense_Mutation p.C3762F 0.20 possibly_damaging(0.639) TCGA-99-8032-01 2 1653191 1653191 G T PXDN Nonsense_Mutation p.Y787* 0.26 TCGA-99-8032-01 2 171238572 171238572 G T MYO3B Nonsense_Mutation p.E340* 0.23 TCGA-99-8032-01 2 179510709 179510709 G C TTN Missense_Mutation p.P13449R 0.29 TCGA-99-8032-01 2 179581883 179581883 G T TTN Nonsense_Mutation p.Y8526* 0.11 TCGA-99-8032-01 2 189932740 189932740 C A COL5A2 Splice_Site p.X467_splice 0.21 TCGA-99-8032-01 2 197636477 197636477 G A GTF3C3 Missense_Mutation p.A752V 0.25 deleterious(0) probably_damaging(0.998) TCGA-99-8032-01 2 202614485 202614485 C A ALS2 Missense_Mutation p.G589C 0.10 deleterious(0.01) probably_damaging(1) TCGA-99-8032-01 2 220312959 220312959 C A SPEG Nonsense_Mutation p.S360* 0.13 TCGA-99-8032-01 2 220396544 220396544 G T ASIC4 Missense_Mutation p.R343L 0.21 tolerated(0.82) benign(0.069) TCGA-99-8032-01 2 223339308 223339308 G A SGPP2 Missense_Mutation p.V81M 0.17 deleterious(0) probably_damaging(0.981) TCGA-99-8032-01 2 234200813 234200813 G C ATG16L1 Missense_Mutation p.K490N 0.11 deleterious(0.01) benign(0.249) TCGA-99-8032-01 2 238657878 238657878 C A LRRFIP1 Missense_Mutation p.L108M 0.21 deleterious(0) probably_damaging(0.999) TCGA-99-8032-01 2 241534630 241534630 C - CAPN10 Frame_Shift_Del p.R397Gfs*31 0.18 TCGA-99-8032-01 2 26863398 26863398 C A CIB4 Intron 0.17 TCGA-99-8032-01 2 272088 272088 G T ACP1 Intron 0.25 TCGA-99-8032-01 2 27355120 27355120 C T PREB Missense_Mutation p.V302I 0.07 tolerated(0.09) benign(0.065) TCGA-99-8032-01 2 31569684 31569684 C G XDH Missense_Mutation p.R1101T 0.04 deleterious(0) probably_damaging(0.948) TCGA-99-8032-01 2 33477850 33477850 C A LTBP1 Nonsense_Mutation p.C702* 0.26 TCGA-99-8032-01 2 46986645 46986645 G T SOCS5 Nonsense_Mutation p.E326* 0.24 TCGA-99-8032-01 2 48873625 48873625 T C STON1-GTF2A1L Missense_Mutation p.V845A 0.13 deleterious(0) possibly_damaging(0.454) TCGA-99-8032-01 2 6991757 6991757 C A CMPK2 Missense_Mutation p.Q350H 0.20 tolerated(0.14) benign(0.081) TCGA-99-8032-01 2 88828978 88828978 C T TEX37 Missense_Mutation p.P177S 0.10 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-99-8032-01 2 90212124 90212124 C T IGKV3D-11 Silent p.S72S 0.09 TCGA-99-8032-01 3 10443856 10443856 A T ATP2B2 Missense_Mutation p.F192I 0.18 tolerated(0.22) probably_damaging(0.997) TCGA-99-8032-01 3 108746644 108746644 T C MORC1 Missense_Mutation p.E553G 0.28 deleterious(0) benign(0.424) TCGA-99-8032-01 3 118824037 118824037 C T IGSF11 Translation_Start_Site p.M1? 0.25 deleterious_low_confidence(0) benign(0) TCGA-99-8032-01 3 120941999 120941999 C G STXBP5L Missense_Mutation p.P369R 0.14 tolerated(0.07) possibly_damaging(0.694) TCGA-99-8032-01 3 121647881 121647881 A T SLC15A2 Missense_Mutation p.H465L 0.09 tolerated(0.51) benign(0.065) TCGA-99-8032-01 3 124377301 124377301 G A KALRN Silent p.V111V 0.16 TCGA-99-8032-01 3 124951807 124951807 C A ZNF148 Missense_Mutation p.G588V 0.30 tolerated(0.14) benign(0.014) TCGA-99-8032-01 3 131624135 131624135 C A CPNE4 Missense_Mutation p.K51N 0.18 tolerated(0.19) benign(0.005) TCGA-99-8032-01 3 145788611 145788611 G A PLOD2 Nonsense_Mutation p.R724* 0.10 TCGA-99-8032-01 3 149238716 149238716 A - WWTR1 Frame_Shift_Del p.F360Sfs*12 0.17 TCGA-99-8032-01 3 151055571 151055571 C G P2RY12 3'UTR 0.20 TCGA-99-8032-01 3 155208579 155208579 C T PLCH1 Missense_Mutation p.D784N 0.20 tolerated(0.08) probably_damaging(1) TCGA-99-8032-01 3 15726906 15726906 C G ANKRD28 Missense_Mutation p.G709A 0.04 tolerated(0.19) benign(0.042) TCGA-99-8032-01 3 184294823 184294823 G C EPHB3 Missense_Mutation p.Q402H 0.34 tolerated(0.07) benign(0.114) TCGA-99-8032-01 3 187416465 187416465 G T RTP2 Missense_Mutation p.P167T 0.28 deleterious(0.02) probably_damaging(0.994) TCGA-99-8032-01 3 38616931 38616931 G A SCN5A Missense_Mutation p.R1175C 0.30 tolerated(0.09) probably_damaging(0.961) TCGA-99-8032-01 3 44488777 44488777 C G ZNF445 Missense_Mutation p.G796R 0.12 deleterious(0) unknown(0) TCGA-99-8032-01 3 48689382 48689382 C G CELSR3 Missense_Mutation p.A1951P 0.42 tolerated(0.29) benign(0.102) TCGA-99-8032-01 3 51749096 51749096 A T GRM2 Missense_Mutation p.D436V 0.10 tolerated(0.19) benign(0.1) TCGA-99-8032-01 4 120072050 120072050 A C MYOZ2 Missense_Mutation p.K34Q 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-99-8032-01 4 121958168 121958168 T C NDNF Missense_Mutation p.N320D 0.13 tolerated(0.27) benign(0.001) TCGA-99-8032-01 4 160263070 160263070 G T RAPGEF2 Missense_Mutation p.K802N 0.17 deleterious(0) probably_damaging(0.994) TCGA-99-8032-01 4 177146444 177146444 C A ASB5 Missense_Mutation p.R82L 0.15 deleterious(0) probably_damaging(0.996) TCGA-99-8032-01 4 189068113 189068113 G C TRIML1 Missense_Mutation p.G332R 0.11 deleterious(0) probably_damaging(1) TCGA-99-8032-01 4 2306730 2306730 C T ZFYVE28 Missense_Mutation p.G446E 0.23 tolerated_low_confidence(0.51) benign(0.005) TCGA-99-8032-01 4 39217615 39217615 A T WDR19 Silent p.V372V 0.33 TCGA-99-8032-01 4 46307694 46307694 C A GABRA2 Missense_Mutation p.W198C 0.12 deleterious(0) probably_damaging(0.999) TCGA-99-8032-01 4 501300 501300 G T PIGG Missense_Mutation p.G226V 0.11 deleterious(0) probably_damaging(1) TCGA-99-8032-01 4 5021099 5021099 G T CYTL1 Missense_Mutation p.P25Q 0.27 deleterious(0) unknown(0) TCGA-99-8032-01 4 62845424 62845424 C A LPHN3 Missense_Mutation p.N915K 0.14 deleterious(0) probably_damaging(0.998) TCGA-99-8032-01 4 66201706 66201706 C A EPHA5 Missense_Mutation p.L932F 0.21 deleterious(0) probably_damaging(0.997) TCGA-99-8032-01 4 72263332 72263332 A T SLC4A4 Missense_Mutation p.S257C 0.32 deleterious(0) probably_damaging(0.95) TCGA-99-8032-01 4 73179476 73179476 C A ADAMTS3 Missense_Mutation p.G555W 0.09 deleterious(0) probably_damaging(0.999) TCGA-99-8032-01 4 7725523 7725523 T G SORCS2 Missense_Mutation p.Y842D 0.29 deleterious(0) probably_damaging(0.999) TCGA-99-8032-01 4 83381180 83381180 G T ENOPH1 Silent p.V231V 0.21 TCGA-99-8032-01 4 85566403 85566403 G T CDS1 Missense_Mutation p.G394V 0.18 deleterious(0) probably_damaging(0.997) TCGA-99-8032-01 4 8605700 8605700 C A CPZ Intron 0.14 TCGA-99-8032-01 4 96166241 96166241 C A UNC5C Missense_Mutation p.G277V 0.16 deleterious(0) probably_damaging(1) TCGA-99-8032-01 5 127595198 127595198 T A FBN2 Silent p.L2896L 0.37 TCGA-99-8032-01 5 127744479 127744479 G T FBN2 Nonsense_Mutation p.C322* 0.21 TCGA-99-8032-01 5 140166660 140166660 C - PCDHA1 Frame_Shift_Del p.T263Hfs*2 0.20 TCGA-99-8032-01 5 140167312 140167312 G A PCDHA1 Silent p.A479A 0.32 TCGA-99-8032-01 5 140176336 140176336 C A PCDHA2 Missense_Mutation p.A596E 0.15 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-99-8032-01 5 140188444 140188444 G A PCDHA4 Missense_Mutation p.E558K 0.09 deleterious_low_confidence(0.02) benign(0.081) TCGA-99-8032-01 5 140237241 140237241 G A PCDHA10 Silent p.A536A 0.35 TCGA-99-8032-01 5 140237350 140237350 G A PCDHA10 Missense_Mutation p.G573S 0.41 tolerated_low_confidence(0.18) benign(0.011) TCGA-99-8032-01 5 140590252 140590252 G T PCDHB12 Silent p.A591A 0.05 TCGA-99-8032-01 5 140590803 140590803 T A PCDHB12 Missense_Mutation p.L775Q 0.22 tolerated_low_confidence(0.41) benign(0.002) TCGA-99-8032-01 5 140768315 140768315 C G PCDHGB4 Silent p.T288T 0.14 TCGA-99-8032-01 5 140773411 140773411 G T PCDHGA8 Missense_Mutation p.R344I 0.24 deleterious_low_confidence(0.03) benign(0.005) TCGA-99-8032-01 5 140783057 140783057 C A PCDHGA9 Missense_Mutation p.L180M 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-99-8032-01 5 149497284 149497284 C A PDGFRB Missense_Mutation p.V1012L 0.19 tolerated(0.26) possibly_damaging(0.509) TCGA-99-8032-01 5 153857485 153857485 G C HAND1 Silent p.L28L 0.06 TCGA-99-8032-01 5 15936685 15936685 G T FBXL7 Missense_Mutation p.G289V 0.18 deleterious(0) probably_damaging(0.942) TCGA-99-8032-01 5 168100236 168100236 C T SLIT3 Missense_Mutation p.G1263R 0.32 tolerated(0.07) probably_damaging(1) TCGA-99-8032-01 5 169122808 169122808 A T DOCK2 Missense_Mutation p.D282V 0.05 deleterious(0.01) possibly_damaging(0.882) TCGA-99-8032-01 5 169685154 169685154 C A LCP2 Missense_Mutation p.L329F 0.17 tolerated(0.09) probably_damaging(0.921) TCGA-99-8032-01 5 169685157 169685157 A C LCP2 Silent p.P328P 0.17 TCGA-99-8032-01 5 176289624 176289624 G C UNC5A Splice_Site p.X24_splice 0.26 TCGA-99-8032-01 5 19473656 19473656 C A CDH18 Missense_Mutation p.E684D 0.17 tolerated(0.59) probably_damaging(0.992) TCGA-99-8032-01 5 23526979 23526979 C A PRDM9 Silent p.V594V 0.23 TCGA-99-8032-01 5 31302387 31302387 G T CDH6 Silent p.G327G 0.22 TCGA-99-8032-01 5 43659345 43659345 G T NNT Missense_Mutation p.G843C 0.24 deleterious(0) probably_damaging(1) TCGA-99-8032-01 5 5460782 5460782 C T KIAA0947 Silent p.F445F 0.16 TCGA-99-8032-01 5 6600086 6600086 C G NSUN2 Missense_Mutation p.D753H 0.05 deleterious_low_confidence(0.01) benign(0.174) TCGA-99-8032-01 5 71494392 71494392 C - MAP1B Frame_Shift_Del p.P1738Lfs*85 0.10 TCGA-99-8032-01 5 71496161 71496161 T A MAP1B Missense_Mutation p.S2327T 0.07 benign(0.074) TCGA-99-8032-01 5 74981259 74981259 C A POC5 Nonsense_Mutation p.G394* 0.25 TCGA-99-8032-01 5 7789838 7789838 G C ADCY2 Silent p.L851L 0.13 TCGA-99-8032-01 5 9197415 9197415 C G SEMA5A Silent p.V311V 0.16 TCGA-99-8032-01 6 101095196 101095196 T A ASCC3 Missense_Mutation p.R1128S 0.08 deleterious(0) possibly_damaging(0.697) TCGA-99-8032-01 6 109773801 109773801 G C MICAL1 Missense_Mutation p.Q197E 0.14 tolerated(1) benign(0.001) TCGA-99-8032-01 6 112496675 112496675 G T LAMA4 Missense_Mutation p.N399K 0.17 tolerated(0.9) benign(0.099) TCGA-99-8032-01 6 116833421 116833421 T A TRAPPC3L Intron 0.12 TCGA-99-8032-01 6 116837205 116837205 C G FAM26E 3'UTR 0.19 TCGA-99-8032-01 6 146480589 146480589 G C GRM1 Missense_Mutation p.S269T 0.11 tolerated(0.24) benign(0.405) TCGA-99-8032-01 6 147124382 147124382 C A ADGB Intron 0.39 TCGA-99-8032-01 6 160174509 160174509 T C WTAP Missense_Mutation p.L157S 0.18 deleterious(0) probably_damaging(0.925) TCGA-99-8032-01 6 160328731 160328731 C A MAS1 Nonsense_Mutation p.Y248* 0.08 TCGA-99-8032-01 6 162622223 162622223 C A PARK2 Missense_Mutation p.Q158H 0.13 deleterious(0.03) probably_damaging(0.919) TCGA-99-8032-01 6 168226591 168226591 C A MLLT4 5'Flank 0.25 TCGA-99-8032-01 6 1960206 1960206 C A GMDS Splice_Site p.X180_splice 0.24 TCGA-99-8032-01 6 25819737 25819737 A T SLC17A1 Splice_Site p.X177_splice 0.22 TCGA-99-8032-01 6 27424622 27424622 G A ZNF184 Missense_Mutation p.P94L 0.40 tolerated(0.42) benign(0.036) TCGA-99-8032-01 6 3723971 3723971 C G PXDC1 Splice_Site p.X193_splice 0.17 TCGA-99-8032-01 6 42905454 42905454 G T CNPY3 Splice_Site p.X125_splice 0.28 TCGA-99-8032-01 6 44218851 44218851 G C HSP90AB1 Missense_Mutation p.D342H 0.12 deleterious(0) probably_damaging(0.953) TCGA-99-8032-01 6 54805921 54805921 G T FAM83B Nonsense_Mutation p.E718* 0.12 TCGA-99-8032-01 6 55925587 55925587 C A COL21A1 Nonsense_Mutation p.E787* 0.27 TCGA-99-8032-01 6 70859924 70859924 C A COL19A1 Missense_Mutation p.P675H 0.12 deleterious(0) probably_damaging(1) TCGA-99-8032-01 6 74533385 74533385 C A CD109 3'UTR 0.21 TCGA-99-8032-01 6 84894917 84894917 G T KIAA1009 Missense_Mutation p.P551T 0.17 tolerated(0.22) benign(0.002) TCGA-99-8032-01 6 87964708 87964708 G T ZNF292 Missense_Mutation p.R454L 0.21 deleterious(0) probably_damaging(0.993) TCGA-99-8032-01 6 97512538 97512538 T - KLHL32 Frame_Shift_Del p.L116Qfs*24 0.12 TCGA-99-8032-01 7 100730990 100730990 G T TRIM56 Missense_Mutation p.D133Y 0.26 deleterious(0.03) probably_damaging(0.996) TCGA-99-8032-01 7 105660897 105660897 G C CDHR3 Missense_Mutation p.D578H 0.06 deleterious(0) probably_damaging(0.959) TCGA-99-8032-01 7 11485751 11485751 G C THSD7A Missense_Mutation p.Q1001E 0.23 deleterious(0.01) possibly_damaging(0.519) TCGA-99-8032-01 7 117432137 117432137 G T CTTNBP2 Silent p.P371P 0.24 TCGA-99-8032-01 7 123097558 123097558 G A IQUB Silent p.C690C 0.04 TCGA-99-8032-01 7 126086302 126086302 C A GRM8 Missense_Mutation p.R852L 0.17 tolerated(0.07) benign(0.41) TCGA-99-8032-01 7 130020340 130020340 G C CPA1 5'UTR 0.10 TCGA-99-8032-01 7 137076038 137076038 G A DGKI Silent p.D1042D 0.30 TCGA-99-8032-01 7 138831962 138831962 G T TTC26 Missense_Mutation p.L157F 0.19 deleterious(0) probably_damaging(0.999) TCGA-99-8032-01 7 138831963 138831963 G T TTC26 Missense_Mutation p.A158S 0.19 deleterious(0.03) probably_damaging(0.994) TCGA-99-8032-01 7 141296405 141296405 A T AGK Missense_Mutation p.K62M 0.15 deleterious(0) probably_damaging(0.981) TCGA-99-8032-01 7 144097306 144097306 C A NOBOX Missense_Mutation p.R315L 0.29 deleterious(0) probably_damaging(1) TCGA-99-8032-01 7 147675037 147675037 C A CNTNAP2 Nonsense_Mutation p.S780* 0.19 TCGA-99-8032-01 7 149557742 149557742 A T ZNF862 Missense_Mutation p.D498V 0.17 deleterious(0) probably_damaging(0.999) TCGA-99-8032-01 7 150217064 150217064 T G GIMAP7 Translation_Start_Site p.M1? 0.10 deleterious(0) probably_damaging(0.982) TCGA-99-8032-01 7 4272965 4272965 G T SDK1 Missense_Mutation p.R1969L 0.33 tolerated(0.4) benign(0.035) TCGA-99-8032-01 7 44148933 44148933 G C AEBP1 Missense_Mutation p.E381D 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.504) TCGA-99-8032-01 7 44924337 44924337 G A PURB Missense_Mutation p.P204L 0.25 tolerated(0.35) benign(0.025) TCGA-99-8032-01 7 5410323 5410323 C A TNRC18 Missense_Mutation p.G1301V 0.30 possibly_damaging(0.572) TCGA-99-8032-01 7 7273973 7273974 - T C1GALT1 Frame_Shift_Ins p.L10Ffs*19 0.21 TCGA-99-8032-01 7 75877533 75877534 - GT SRRM3 Frame_Shift_Ins p.G89Wfs*8 0.17 TCGA-99-8032-01 7 79828541 79828541 G C GNAI1 Missense_Mutation p.D102H 0.13 deleterious(0.05) benign(0.335) TCGA-99-8032-01 7 8125841 8125841 G A GLCCI1 Silent p.S439S 0.19 TCGA-99-8032-01 7 81388090 81388090 T C HGF Silent p.Q95Q 0.18 TCGA-99-8032-01 7 81603859 81603859 G T CACNA2D1 Nonsense_Mutation p.C655* 0.27 TCGA-99-8032-01 7 86548627 86548627 C A KIAA1324L Splice_Site p.X467_splice 0.21 TCGA-99-8032-01 7 88424178 88424178 G A C7orf62 Missense_Mutation p.R27C 0.24 deleterious(0) probably_damaging(0.992) TCGA-99-8032-01 7 90895851 90895851 C T FZD1 Silent p.I552I 0.22 TCGA-99-8032-01 7 99032694 99032694 C A ATP5J2-PTCD1 Nonsense_Mutation p.E107* 0.38 TCGA-99-8032-01 7 99227455 99227455 G T ZSCAN25 Nonsense_Mutation p.E483* 0.09 TCGA-99-8032-01 8 10383167 10383167 C - PRSS55 Frame_Shift_Del p.P25Qfs*8 0.29 TCGA-99-8032-01 8 116631983 116631983 C G TRPS1 Silent p.P114P 0.44 TCGA-99-8032-01 8 121357762 121357762 C T COL14A1 Silent p.F1679F 0.16 TCGA-99-8032-01 8 139163953 139163953 C A FAM135B Missense_Mutation p.G922V 0.42 tolerated_low_confidence(0.06) benign(0.005) TCGA-99-8032-01 8 139164776 139164776 G T FAM135B Missense_Mutation p.L648M 0.13 tolerated(0.09) possibly_damaging(0.717) TCGA-99-8032-01 8 139763750 139763750 G T COL22A1 Missense_Mutation p.P679Q 0.15 unknown(0) TCGA-99-8032-01 8 145139400 145139400 G T GPAA1 Missense_Mutation p.G300C 0.16 deleterious(0) probably_damaging(0.997) TCGA-99-8032-01 8 17829939 17829939 C A PCM1 Nonsense_Mutation p.S1229* 0.15 TCGA-99-8032-01 8 18729563 18729563 C A PSD3 Nonsense_Mutation p.E271* 0.42 TCGA-99-8032-01 8 19682462 19682462 A T INTS10 Missense_Mutation p.I329L 0.27 deleterious(0.04) benign(0.067) TCGA-99-8032-01 8 24359005 24359005 C A ADAM7 Silent p.T708T 0.27 TCGA-99-8032-01 8 24366086 24366086 C A ADAM7 3'UTR 0.27 TCGA-99-8032-01 8 25216507 25216507 T G DOCK5 Missense_Mutation p.L960R 0.25 deleterious(0) benign(0.089) TCGA-99-8032-01 8 25365090 25365090 G C CDCA2 Missense_Mutation p.E970Q 0.03 deleterious(0.03) benign(0.331) TCGA-99-8032-01 8 2964136 2964136 G T CSMD1 Missense_Mutation p.P2288H 0.21 probably_damaging(0.997) TCGA-99-8032-01 8 3000087 3000087 C G CSMD1 Silent p.T2047T 0.11 TCGA-99-8032-01 8 30977802 30977802 C T WRN Missense_Mutation p.A831V 0.30 deleterious(0.01) probably_damaging(0.976) TCGA-99-8032-01 8 3611481 3611481 C A CSMD1 Missense_Mutation p.R301L 0.21 probably_damaging(0.977) TCGA-99-8032-01 8 36793301 36793301 A G KCNU1 Missense_Mutation p.I1105V 0.11 tolerated_low_confidence(0.15) benign(0) TCGA-99-8032-01 8 37822813 37822813 G A ADRB3 Missense_Mutation p.A392V 0.21 tolerated(0.19) benign(0.157) TCGA-99-8032-01 8 51705299 51705299 T A SNTG1 Silent p.A488A 0.43 TCGA-99-8032-01 8 59720293 59720293 G T TOX 3'UTR 0.15 TCGA-99-8032-01 8 61777627 61777627 G T CHD7 Missense_Mutation p.R2710L 0.26 benign(0.002) TCGA-99-8032-01 8 77767825 77767825 G T ZFHX4 Missense_Mutation p.D2890Y 0.14 probably_damaging(0.971) TCGA-99-8032-01 8 77768504 77768504 C G ZFHX4 Missense_Mutation p.S3116C 0.21 probably_damaging(0.994) TCGA-99-8032-01 8 85441657 85441657 A G RALYL Missense_Mutation p.K47R 0.18 deleterious(0.02) possibly_damaging(0.63) TCGA-99-8032-01 8 89086932 89086932 C A MMP16 Missense_Mutation p.D375Y 0.10 deleterious(0.02) benign(0.033) TCGA-99-8032-01 8 89086933 89086933 C A MMP16 Missense_Mutation p.M374I 0.10 tolerated(0.06) benign(0.026) TCGA-99-8032-01 8 96044273 96044273 C G NDUFAF6 Missense_Mutation p.S83C 0.09 tolerated(0.23) benign(0.033) TCGA-99-8032-01 9 107361002 107361002 C A OR13C5 Silent p.S231S 0.45 TCGA-99-8032-01 9 107380307 107380307 T A OR13C9 Missense_Mutation p.Y60F 0.38 deleterious(0.01) probably_damaging(0.993) TCGA-99-8032-01 9 113166770 113166770 C A SVEP1 Missense_Mutation p.R3168L 0.21 benign(0.009) TCGA-99-8032-01 9 117240845 117240845 C A DFNB31 Silent p.G275G 0.18 TCGA-99-8032-01 9 120470855 120470855 T A TLR4 Silent p.I36I 0.24 TCGA-99-8032-01 9 120476554 120476554 G T TLR4 Silent p.V716V 0.23 TCGA-99-8032-01 9 124111469 124111469 T A STOM Missense_Mutation p.R152W 0.33 deleterious(0) probably_damaging(1) TCGA-99-8032-01 9 130648896 130648896 G A ST6GALNAC6 Silent p.S328S 0.27 TCGA-99-8032-01 9 132842044 132842044 A T GPR107 Silent p.T174T 0.06 TCGA-99-8032-01 9 133738212 133738212 G C ABL1 Silent p.T223T 0.24 TCGA-99-8032-01 9 133901830 133901830 T C LAMC3 Missense_Mutation p.Y178H 0.22 deleterious(0.05) benign(0.182) TCGA-99-8032-01 9 134394271 134394271 C A POMT1 Silent p.I493I 0.07 TCGA-99-8032-01 9 137703220 137703220 C T COL5A1 Silent p.I1188I 0.25 TCGA-99-8032-01 9 137801676 137801676 T A FCN1 Nonsense_Mutation p.K317* 0.36 TCGA-99-8032-01 9 2029134 2029134 G T SMARCA2 Missense_Mutation p.G38C 0.40 unknown(0) TCGA-99-8032-01 9 2029135 2029135 G T SMARCA2 Missense_Mutation p.G38V 0.36 unknown(0) TCGA-99-8032-01 9 32630337 32630337 T - TAF1L Frame_Shift_Del p.E1748Rfs*44 0.13 TCGA-99-8032-01 9 37974719 37974719 G A SHB Silent p.P318P 0.27 TCGA-99-8032-01 9 5072599 5072599 G T JAK2 Silent p.L583L 0.20 TCGA-99-8032-01 9 80022476 80022476 A G VPS13A Missense_Mutation p.R3143G 0.34 deleterious(0) benign(0.044) TCGA-99-8032-01 X 103494998 103494998 T A ESX1 Missense_Mutation p.R378W 0.50 deleterious_low_confidence(0) unknown(0) TCGA-99-8032-01 X 109697789 109697789 A T RGAG1 Missense_Mutation p.K1315M 0.55 deleterious_low_confidence(0.03) probably_damaging(0.992) TCGA-99-8032-01 X 114882230 114882230 C T PLS3 Silent p.S551S 0.52 TCGA-99-8032-01 X 125685176 125685176 A C DCAF12L1 Splice_Site 0.24 TCGA-99-8032-01 X 125686318 125686318 G T DCAF12L1 Missense_Mutation p.L92M 0.52 deleterious(0.01) probably_damaging(0.966) TCGA-99-8032-01 X 133700442 133700442 T G PLAC1 Missense_Mutation p.M91L 0.07 tolerated(0.28) benign(0.013) TCGA-99-8032-01 X 135428781 135428781 G T GPR112 Missense_Mutation p.R972S 0.39 deleterious(0) benign(0.154) TCGA-99-8032-01 X 152086639 152086639 T A ZNF185 Silent p.A124A 0.45 TCGA-99-8032-01 X 24024448 24024448 G A KLHL15 Silent p.C121C 0.36 TCGA-99-8032-01 X 2942079 2942079 C A ARSH Missense_Mutation p.L307M 0.45 deleterious(0.01) possibly_damaging(0.57) TCGA-99-8032-01 X 31089461 31089461 C T FTHL17 3'UTR 0.62 TCGA-99-8032-01 X 3241975 3241975 G T MXRA5 Missense_Mutation p.T584K 0.35 tolerated(0.1) possibly_damaging(0.53) TCGA-99-8032-01 X 48924721 48924721 C T CCDC120 Silent p.G322G 0.10 TCGA-99-8032-01 X 76777777 76777777 C A ATRX Missense_Mutation p.L2313F 0.52 benign(0.099) TCGA-99-8032-01 X 91134012 91134012 C A PCDH11X Missense_Mutation p.P925T 0.17 deleterious(0) possibly_damaging(0.732) TCGA-99-8032-01 Y 6736195 6736195 G T AMELY Silent p.P152P 0.68 TCGA-99-8033-01 10 101823387 101823387 C A CPN1 Missense_Mutation p.W285C 0.09 deleterious(0) probably_damaging(0.997) TCGA-99-8033-01 10 124697613 124697613 C T C10orf88 Missense_Mutation p.M237I 0.13 tolerated(0.53) benign(0.006) TCGA-99-8033-01 10 131636201 131636201 G T EBF3 Missense_Mutation p.P550T 0.19 deleterious_low_confidence(0) benign(0.31) TCGA-99-8033-01 10 131761981 131761981 C G EBF3 Missense_Mutation p.E18Q 0.18 deleterious_low_confidence(0.03) benign(0.385) TCGA-99-8033-01 10 134898429 134898429 C A GPR123 5'Flank 0.26 TCGA-99-8033-01 10 17275594 17275594 C T VIM Silent p.D211D 0.11 TCGA-99-8033-01 10 3206026 3206026 C A PITRM1 Missense_Mutation p.D228Y 0.08 deleterious(0) benign(0.062) TCGA-99-8033-01 10 38245973 38245973 T C ZNF25 Silent p.V71V 0.10 TCGA-99-8033-01 10 5777329 5777329 G A FAM208B Missense_Mutation p.A423T 0.18 tolerated(0.31) benign(0.156) TCGA-99-8033-01 10 79590037 79590037 C A DLG5 Silent p.P649P 0.20 TCGA-99-8033-01 10 79629016 79629016 C A AL391421.1 3'UTR 0.27 TCGA-99-8033-01 10 79629017 79629017 C A AL391421.1 3'UTR 0.27 TCGA-99-8033-01 10 82034280 82034280 C A MAT1A Missense_Mutation p.V361F 0.23 deleterious(0.04) possibly_damaging(0.714) TCGA-99-8033-01 10 85972117 85972117 G A CDHR1 Missense_Mutation p.S579N 0.11 tolerated(1) benign(0.001) TCGA-99-8033-01 10 94223586 94223586 G T IDE Missense_Mutation p.A888E 0.22 deleterious(0) probably_damaging(0.999) TCGA-99-8033-01 11 115102140 115102140 G T CADM1 Missense_Mutation p.N165K 0.09 deleterious(0.01) possibly_damaging(0.513) TCGA-99-8033-01 11 128680401 128680401 G T FLI1 Missense_Mutation p.D293Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-99-8033-01 11 24518774 24518774 C G LUZP2 5'UTR 0.23 TCGA-99-8033-01 11 48510632 48510632 G T OR4A47 Missense_Mutation p.M96I 0.18 deleterious_low_confidence(0.03) benign(0.137) TCGA-99-8033-01 11 55038289 55038289 C A TRIM48 3'UTR 0.22 TCGA-99-8033-01 11 55540981 55540981 C A OR5D13 Missense_Mutation p.P23Q 0.12 deleterious(0) probably_damaging(0.937) TCGA-99-8033-01 11 55873213 55873213 C A OR8H2 Nonsense_Mutation p.S232* 0.13 TCGA-99-8033-01 11 56143603 56143603 T A OR8U1 Nonsense_Mutation p.Y168* 0.13 TCGA-99-8033-01 11 56237432 56237432 G T OR5M3 Missense_Mutation p.P181H 0.17 deleterious(0) probably_damaging(0.995) TCGA-99-8033-01 11 56310237 56310237 G A OR5M11 Missense_Mutation p.T166I 0.10 tolerated(0.06) benign(0.03) TCGA-99-8033-01 11 60666028 60666028 C A PRPF19 Missense_Mutation p.K375N 0.20 deleterious(0) benign(0.378) TCGA-99-8033-01 11 60971000 60971000 C A PGA3 5'UTR 0.07 TCGA-99-8033-01 11 65793793 65793793 C T CATSPER1 Missense_Mutation p.D20N 0.16 deleterious(0.02) benign(0.006) TCGA-99-8033-01 11 74049637 74049637 C A PGM2L1 Missense_Mutation p.V548L 0.17 tolerated(0.08) benign(0.014) TCGA-99-8033-01 11 76506656 76506656 C G TSKU 5'UTR 0.06 TCGA-99-8033-01 12 101880376 101880376 C T SPIC Nonsense_Mutation p.Q192* 0.13 TCGA-99-8033-01 12 118199146 118199146 G A KSR2 Missense_Mutation p.P219L 0.18 deleterious(0.04) benign(0.002) TCGA-99-8033-01 12 121248609 121248609 T A SPPL3 Intron 0.25 TCGA-99-8033-01 12 130648608 130648608 G C FZD10 Missense_Mutation p.R374T 0.21 tolerated(0.25) probably_damaging(0.996) TCGA-99-8033-01 12 25398282 25398282 C A KRAS Missense_Mutation p.G13C 0.10 deleterious(0.02) probably_damaging(0.997) TCGA-99-8033-01 12 31540647 31540647 C A DENND5B Missense_Mutation p.A1239S 0.14 tolerated(0.91) possibly_damaging(0.79) TCGA-99-8033-01 12 40012582 40012582 C A ABCD2 Missense_Mutation p.G279V 0.22 deleterious(0) probably_damaging(0.998) TCGA-99-8033-01 12 49412626 49412626 C A PRKAG1 5'Flank 0.20 TCGA-99-8033-01 12 53931237 53931237 G C ATF7 Missense_Mutation p.P122A 0.17 deleterious(0.03) benign(0.135) TCGA-99-8033-01 12 57573277 57573277 G A LRP1 Missense_Mutation p.R1635Q 0.12 probably_damaging(0.999) TCGA-99-8033-01 12 5941669 5941669 T A ANO2 Missense_Mutation p.N241I 0.19 tolerated(0.28) possibly_damaging(0.554) TCGA-99-8033-01 12 6671087 6671087 C A NOP2 Missense_Mutation p.K376N 0.11 deleterious(0.04) possibly_damaging(0.883) TCGA-99-8033-01 12 70928281 70928281 C T PTPRB Missense_Mutation p.V2119M 0.19 deleterious(0) probably_damaging(0.937) TCGA-99-8033-01 12 7651536 7651536 A G CD163 Missense_Mutation p.W236R 0.18 deleterious(0) probably_damaging(1) TCGA-99-8033-01 12 85264442 85264442 T A SLC6A15 Missense_Mutation p.Q437L 0.21 deleterious(0) benign(0.446) TCGA-99-8033-01 12 85279726 85279726 G T SLC6A15 Missense_Mutation p.S137R 0.22 tolerated(0.1) benign(0.401) TCGA-99-8033-01 13 38164596 38164596 G C POSTN Missense_Mutation p.D118E 0.16 tolerated(0.24) benign(0.212) TCGA-99-8033-01 13 53603037 53603037 G - OLFM4 Frame_Shift_Del p.D24Mfs*37 0.16 TCGA-99-8033-01 14 100129270 100129270 C G HHIPL1 Missense_Mutation p.I520M 0.27 deleterious(0) probably_damaging(0.928) TCGA-99-8033-01 14 104642556 104642556 G T KIF26A Missense_Mutation p.G1144V 0.58 tolerated(0.52) benign(0.016) TCGA-99-8033-01 14 51561184 51561184 G T TRIM9 Nonsense_Mutation p.Y158* 0.39 TCGA-99-8033-01 14 96134605 96134605 C A TCL6 Intron 0.24 TCGA-99-8033-01 15 41823313 41823313 C G RPAP1 Missense_Mutation p.G284A 0.25 tolerated(0.57) benign(0.004) TCGA-99-8033-01 15 41823314 41823314 C T RPAP1 Missense_Mutation p.G284R 0.24 tolerated(0.52) benign(0.007) TCGA-99-8033-01 15 43579514 43579514 C G TGM7 Missense_Mutation p.G277R 0.12 deleterious(0) probably_damaging(1) TCGA-99-8033-01 15 43579515 43579515 G T TGM7 Nonsense_Mutation p.Y276* 0.12 TCGA-99-8033-01 15 53907791 53907791 G A WDR72 Missense_Mutation p.S871L 0.08 deleterious(0.03) possibly_damaging(0.611) TCGA-99-8033-01 15 65157235 65157235 C T PLEKHO2 Silent p.T207T 0.23 TCGA-99-8033-01 15 84611511 84611511 C A ADAMTSL3 Missense_Mutation p.P761T 0.17 deleterious(0) probably_damaging(0.979) TCGA-99-8033-01 16 15809106 15809106 G T MYH11 Nonsense_Mutation p.S1850* 0.19 TCGA-99-8033-01 16 1706092 1706092 C T CRAMP1L Missense_Mutation p.A445V 0.27 tolerated_low_confidence(0.07) probably_damaging(0.999) TCGA-99-8033-01 16 2129276 2129276 G C TSC2 Splice_Site p.X1044_splice 0.24 TCGA-99-8033-01 16 31437429 31437429 C T ITGAD Missense_Mutation p.P1156S 0.15 tolerated_low_confidence(0.1) benign(0.03) TCGA-99-8033-01 16 3779779 3779779 C A CREBBP Missense_Mutation p.G1757C 0.21 unknown(0) TCGA-99-8033-01 16 77401531 77401531 C A ADAMTS18 Silent p.A195A 0.25 TCGA-99-8033-01 17 11893855 11893855 G A ZNF18 Missense_Mutation p.S197F 0.22 deleterious(0.02) possibly_damaging(0.723) TCGA-99-8033-01 17 16526104 16526104 T C ZNF624 Missense_Mutation p.N699S 0.24 tolerated(0.18) possibly_damaging(0.474) TCGA-99-8033-01 17 17494897 17494897 G T PEMT Nonsense_Mutation p.S15* 0.15 TCGA-99-8033-01 17 3324273 3324273 C A OR3A3 Missense_Mutation p.P138T 0.24 deleterious(0) probably_damaging(1) TCGA-99-8033-01 17 38569028 38569028 T A TOP2A Missense_Mutation p.N258Y 0.23 deleterious(0) probably_damaging(0.977) TCGA-99-8033-01 17 45917625 45917625 G A SCRN2 Silent p.G96G 0.19 TCGA-99-8033-01 17 47117345 47117345 C T IGF2BP1 Missense_Mutation p.A237V 0.21 tolerated(0.37) possibly_damaging(0.803) TCGA-99-8033-01 17 54305291 54305291 A G ANKFN1 Missense_Mutation p.K12R 0.22 tolerated_low_confidence(0.12) benign(0.01) TCGA-99-8033-01 17 56573018 56573018 T A MTMR4 Missense_Mutation p.S829C 0.24 tolerated_low_confidence(0.06) benign(0.002) TCGA-99-8033-01 17 58024113 58024113 C T RPS6KB1 Silent p.I514I 0.16 TCGA-99-8033-01 17 62144144 62144144 G A ERN1 Silent p.I243I 0.09 TCGA-99-8033-01 17 64210622 64210622 C A APOH Nonsense_Mutation p.E311* 0.17 TCGA-99-8033-01 17 74396592 74396592 T C UBE2O Missense_Mutation p.S312G 0.11 tolerated(0.12) probably_damaging(0.952) TCGA-99-8033-01 17 7463672 7463672 G C TNFSF12-TNFSF13 Silent p.L250L 0.26 TCGA-99-8033-01 17 7577046 7577046 C A TP53 Nonsense_Mutation p.E298* 0.29 TCGA-99-8033-01 17 7830975 7830975 C A KCNAB3 Missense_Mutation p.E108D 0.11 tolerated(0.25) probably_damaging(0.995) TCGA-99-8033-01 18 21416985 21416985 A G LAMA3 Missense_Mutation p.I1009V 0.23 benign(0.002) TCGA-99-8033-01 18 31325236 31325236 G A ASXL3 Silent p.K1808K 0.16 TCGA-99-8033-01 18 34855140 34855140 A G CELF4 Missense_Mutation p.F172S 0.14 deleterious(0) probably_damaging(0.974) TCGA-99-8033-01 19 10599915 10599915 C T KEAP1 Missense_Mutation p.R554Q 0.16 deleterious(0) probably_damaging(0.982) TCGA-99-8033-01 19 12127089 12127089 T C ZNF433 Missense_Mutation p.Y198C 0.25 deleterious(0) probably_damaging(0.992) TCGA-99-8033-01 19 19740905 19740905 C T GMIP Missense_Mutation p.R927H 0.17 deleterious(0) benign(0.135) TCGA-99-8033-01 19 2043524 2043524 G T MKNK2 Missense_Mutation p.L133M 0.32 deleterious(0.01) possibly_damaging(0.856) TCGA-99-8033-01 19 22942333 22942333 G A ZNF99 Silent p.H126H 0.14 TCGA-99-8033-01 19 31039059 31039059 C A ZNF536 Missense_Mutation p.L845I 0.19 tolerated(0.23) benign(0.437) TCGA-99-8033-01 19 33134491 33134491 C T ANKRD27 Missense_Mutation p.R191K 0.18 tolerated(0.42) benign(0.067) TCGA-99-8033-01 19 37975236 37975236 A T ZNF570 Nonsense_Mutation p.R238* 0.21 TCGA-99-8033-01 19 38126627 38126627 C A ZFP30 Missense_Mutation p.C272F 0.13 deleterious(0) probably_damaging(1) TCGA-99-8033-01 19 38951108 38951108 G A RYR1 Silent p.E818E 0.19 TCGA-99-8033-01 19 38951109 38951109 C A RYR1 Silent p.R819R 0.19 TCGA-99-8033-01 19 43358257 43358257 C A PSG10P RNA 0.15 TCGA-99-8033-01 19 51885669 51885669 C T LIM2 Intron 0.11 TCGA-99-8033-01 19 625205 625205 C A POLRMT Missense_Mutation p.G291V 0.25 deleterious(0) probably_damaging(0.984) TCGA-99-8033-01 1 103440388 103440388 G T COL11A1 Missense_Mutation p.P936T 0.19 unknown(0) TCGA-99-8033-01 1 110163670 110163670 G A AMPD2 Missense_Mutation p.R12Q 0.21 tolerated_low_confidence(0.16) benign(0) TCGA-99-8033-01 1 110884206 110884206 C T RBM15 Nonsense_Mutation p.R727* 0.14 TCGA-99-8033-01 1 152770558 152770558 G - LCE1D Frame_Shift_Del p.G98Afs*? 0.25 TCGA-99-8033-01 1 153430337 153430337 G A S100A7 Missense_Mutation p.T84I 0.20 tolerated(0.5) benign(0) TCGA-99-8033-01 1 155030407 155030407 G A ADAM15 Silent p.Q499Q 0.04 TCGA-99-8033-01 1 155783529 155783529 G A GON4L Missense_Mutation p.P450S 0.15 deleterious(0.02) possibly_damaging(0.803) TCGA-99-8033-01 1 156508667 156508667 T A IQGAP3 Missense_Mutation p.H1072L 0.36 deleterious(0.04) benign(0.232) TCGA-99-8033-01 1 158152818 158152818 T C CD1D Missense_Mutation p.I253T 0.05 tolerated(0.09) benign(0.23) TCGA-99-8033-01 1 158225836 158225836 C T CD1A Missense_Mutation p.S123F 0.07 tolerated(0.54) probably_damaging(0.997) TCGA-99-8033-01 1 158576274 158576274 G T OR10Z1 Missense_Mutation p.G16C 0.18 deleterious(0) possibly_damaging(0.804) TCGA-99-8033-01 1 161761933 161761933 G T ATF6 Missense_Mutation p.K168N 0.11 deleterious(0.02) possibly_damaging(0.533) TCGA-99-8033-01 1 173930230 173930230 G C RC3H1 Silent p.T785T 0.08 TCGA-99-8033-01 1 180158767 180158767 T C QSOX1 Silent p.I366I 0.15 TCGA-99-8033-01 1 186120875 186120875 G T HMCN1 Nonsense_Mutation p.G4966* 0.32 TCGA-99-8033-01 1 197031084 197031084 G T F13B Missense_Mutation p.P94H 0.22 deleterious(0) probably_damaging(1) TCGA-99-8033-01 1 198711391 198711391 C A PTPRC Silent p.I864I 0.20 TCGA-99-8033-01 1 220232232 220232232 T A BPNT1 Missense_Mutation p.Y294F 0.08 tolerated(0.1) possibly_damaging(0.667) TCGA-99-8033-01 1 2237607 2237607 G T SKI Missense_Mutation p.R639L 0.31 deleterious(0.01) possibly_damaging(0.743) TCGA-99-8033-01 1 238049083 238049083 G C ZP4 Missense_Mutation p.L315V 0.11 deleterious(0) probably_damaging(0.998) TCGA-99-8033-01 1 240492663 240492663 C A FMN2 Silent p.I1444I 0.13 TCGA-99-8033-01 1 24684935 24684935 T A STPG1 3'UTR 0.19 TCGA-99-8033-01 1 248344103 248344103 G A OR2M2 Silent p.K272K 0.17 TCGA-99-8033-01 1 2938971 2938971 G T ACTRT2 Nonsense_Mutation p.E241* 0.12 TCGA-99-8033-01 1 32052549 32052549 G T TINAGL1 Missense_Mutation p.R458L 0.48 deleterious(0.01) probably_damaging(0.996) TCGA-99-8033-01 1 33234331 33234331 G A KIAA1522 Missense_Mutation p.A181T 0.08 tolerated(0.21) unknown(0) TCGA-99-8033-01 1 33292201 33292201 G A S100PBP Silent p.S167S 0.46 TCGA-99-8033-01 1 3511923 3511923 C T MEGF6 Missense_Mutation p.D119N 0.06 tolerated(0.24) benign(0) TCGA-99-8033-01 1 43738640 43738640 G T TMEM125 Missense_Mutation p.V83L 0.12 tolerated(1) benign(0.203) TCGA-99-8033-01 1 70715710 70715710 C T SRSF11 Silent p.S366S 0.18 TCGA-99-8033-01 1 76397866 76397866 C T ASB17 Silent p.Q37Q 0.07 TCGA-99-8033-01 1 77509890 77509890 C A ST6GALNAC5 Missense_Mutation p.P88H 0.11 probably_damaging(0.977) TCGA-99-8033-01 1 77509891 77509891 C A ST6GALNAC5 Silent p.P88P 0.11 TCGA-99-8033-01 1 8390300 8390300 C T SLC45A1 Silent p.G249G 0.11 TCGA-99-8033-01 1 9791826 9791826 C T CLSTN1 Silent p.P852P 0.24 TCGA-99-8033-01 1 97981407 97981407 C T DPYD Missense_Mutation p.G539R 0.18 deleterious(0) probably_damaging(0.965) TCGA-99-8033-01 20 25484662 25484663 AG - NINL Frame_Shift_Del p.F263Qfs*3 0.20 TCGA-99-8033-01 20 60913424 60913424 G A LAMA5 Silent p.P540P 0.11 TCGA-99-8033-01 22 39440175 39440175 C A APOBEC3F Intron 0.25 TCGA-99-8033-01 2 105654581 105654581 G A MRPS9 Missense_Mutation p.A11T 0.14 tolerated_low_confidence(0.17) benign(0.002) TCGA-99-8033-01 2 125261888 125261888 G T CNTNAP5 Missense_Mutation p.C360F 0.11 deleterious(0) probably_damaging(0.999) TCGA-99-8033-01 2 136609003 136609003 T A MCM6 Missense_Mutation p.E629V 0.31 deleterious(0) probably_damaging(1) TCGA-99-8033-01 2 1480950 1480950 C T TPO Silent p.L304L 0.18 TCGA-99-8033-01 2 1670116 1670116 C A PXDN Silent p.P387P 0.15 TCGA-99-8033-01 2 170027086 170027086 C T LRP2 Silent p.G3785G 0.07 TCGA-99-8033-01 2 176812295 176812295 G C KIAA1715 Missense_Mutation p.P207A 0.08 deleterious(0.01) possibly_damaging(0.818) TCGA-99-8033-01 2 198436779 198436779 C G RFTN2 Missense_Mutation p.G487R 0.05 deleterious(0) possibly_damaging(0.471) TCGA-99-8033-01 2 207174040 207174040 A T ZDBF2 Missense_Mutation p.Q1596H 0.19 tolerated(0.13) benign(0.216) TCGA-99-8033-01 2 219232586 219232586 G A C2orf62 Missense_Mutation p.D355N 0.14 deleterious(0.03) benign(0.245) TCGA-99-8033-01 2 231314306 231314306 A G SP100 Missense_Mutation p.E206G 0.19 tolerated(0.06) possibly_damaging(0.607) TCGA-99-8033-01 2 234854514 234854514 C G TRPM8 Silent p.A238A 0.12 TCGA-99-8033-01 2 26864206 26864206 C A CIB4 5'UTR 0.16 TCGA-99-8033-01 2 26951259 26951259 C T KCNK3 Silent p.S336S 0.16 TCGA-99-8033-01 2 27324636 27324637 - T CGREF1 Frame_Shift_Ins p.P155Tfs*20 0.15 TCGA-99-8033-01 2 37035872 37035872 C A VIT Silent p.I549I 0.10 TCGA-99-8033-01 2 37455252 37455252 T A CEBPZ Nonsense_Mutation p.K362* 0.22 TCGA-99-8033-01 2 48600429 48600429 A C FOXN2 Splice_Site p.X235_splice 0.23 TCGA-99-8033-01 2 48808711 48808711 G T STON1-GTF2A1L Missense_Mutation p.Q313H 0.10 deleterious(0) benign(0.429) TCGA-99-8033-01 2 55462635 55462635 T C RPS27A Silent p.F131F 0.15 TCGA-99-8033-01 2 71044012 71044012 C T CLEC4F Silent p.Q167Q 0.13 TCGA-99-8033-01 2 74459673 74459673 G A SLC4A5 Silent p.S899S 0.13 TCGA-99-8033-01 3 108363265 108363265 G C DZIP3 Missense_Mutation p.D466H 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-99-8033-01 3 148596298 148596298 C T CPA3 Missense_Mutation p.H114Y 0.27 tolerated(0.38) benign(0.051) TCGA-99-8033-01 3 186947573 186947573 C T MASP1 3'Flank 0.14 TCGA-99-8033-01 3 46009257 46009257 T C FYCO1 Silent p.A523A 0.23 TCGA-99-8033-01 4 109805345 109805345 G T COL25A1 Missense_Mutation p.P337T 0.11 tolerated(0.08) probably_damaging(1) TCGA-99-8033-01 4 119036052 119036052 C A NDST3 Silent p.P387P 0.13 TCGA-99-8033-01 4 13615185 13615185 C A BOD1L1 Missense_Mutation p.E425D 0.18 probably_damaging(0.996) TCGA-99-8033-01 4 145039898 145039898 C G GYPA Missense_Mutation p.R80S 0.18 tolerated(0.05) benign(0.03) TCGA-99-8033-01 4 55155025 55155025 G T PDGFRA Missense_Mutation p.G912W 0.12 deleterious(0) probably_damaging(0.999) TCGA-99-8033-01 4 68964643 68964643 C A TMPRSS11F Missense_Mutation p.G42V 0.17 deleterious(0.03) possibly_damaging(0.647) TCGA-99-8033-01 4 68964644 68964644 C A TMPRSS11F Nonsense_Mutation p.G42* 0.17 TCGA-99-8033-01 4 8230268 8230268 C - SH3TC1 Frame_Shift_Del p.L950Cfs*194 0.16 TCGA-99-8033-01 5 109155454 109155454 G A MAN2A1 Missense_Mutation p.D732N 0.08 tolerated(0.29) possibly_damaging(0.784) TCGA-99-8033-01 5 110407596 110407596 C G TSLP Missense_Mutation p.P3R 0.22 deleterious(0) benign(0.276) TCGA-99-8033-01 5 127712545 127712545 A G FBN2 Silent p.D617D 0.13 TCGA-99-8033-01 5 140503619 140503619 C A PCDHB4 Missense_Mutation p.A680D 0.24 tolerated_low_confidence(0.13) benign(0.009) TCGA-99-8033-01 5 147030044 147030044 C T JAKMIP2 Missense_Mutation p.G232S 0.06 deleterious(0.01) benign(0.008) TCGA-99-8033-01 5 1474094 1474094 T G LPCAT1 Missense_Mutation p.D386A 0.24 tolerated(0.07) benign(0.033) TCGA-99-8033-01 5 150948474 150948474 C A FAT2 Missense_Mutation p.G7C 0.08 possibly_damaging(0.606) TCGA-99-8033-01 5 156479590 156479590 G A HAVCR1 Missense_Mutation p.T152M 0.12 tolerated(0.14) unknown(0) TCGA-99-8033-01 5 176012969 176012969 A T CDHR2 Missense_Mutation p.T917S 0.08 tolerated(0.44) benign(0.146) TCGA-99-8033-01 5 26902731 26902731 C A CDH9 Silent p.V369V 0.44 TCGA-99-8033-01 5 33944811 33944811 G C SLC45A2 Missense_Mutation p.S512C 0.07 deleterious(0) probably_damaging(1) TCGA-99-8033-01 5 36608564 36608564 C T SLC1A3 Silent p.G13G 0.06 TCGA-99-8033-01 5 38950545 38950545 C T RICTOR Silent p.T1135T 0.09 TCGA-99-8033-01 5 78415090 78415090 C G BHMT Missense_Mutation p.L59V 0.10 deleterious(0.03) benign(0.129) TCGA-99-8033-01 5 90074370 90074370 C T GPR98 Missense_Mutation p.P4265S 0.23 probably_damaging(0.96) TCGA-99-8033-01 6 10586826 10586826 G T GCNT2 Intron 0.20 TCGA-99-8033-01 6 136582447 136582447 T C BCLAF1 Missense_Mutation p.M905V 0.07 tolerated(0.88) unknown(0) TCGA-99-8033-01 6 138607928 138607928 G A KIAA1244 Missense_Mutation p.S887N 0.13 tolerated(0.25) probably_damaging(0.93) TCGA-99-8033-01 6 152129053 152129053 C A ESR1 Silent p.T2T 0.12 TCGA-99-8033-01 6 22297263 22297263 C A PRL 5'UTR 0.27 TCGA-99-8033-01 6 25538152 25538152 A C LRRC16A Missense_Mutation p.I713L 0.25 tolerated(0.09) benign(0.002) TCGA-99-8033-01 6 30546297 30546297 G T ABCF1 Missense_Mutation p.E144D 0.20 tolerated_low_confidence(0.11) possibly_damaging(0.874) TCGA-99-8033-01 6 86253019 86253019 C A SNX14 Nonsense_Mutation p.E424* 0.26 TCGA-99-8033-01 7 111375194 111375194 G C DOCK4 Missense_Mutation p.L1770V 0.17 deleterious_low_confidence(0.01) benign(0.045) TCGA-99-8033-01 7 123599887 123599887 T C SPAM1 Missense_Mutation p.I465T 0.20 deleterious(0) probably_damaging(0.979) TCGA-99-8033-01 7 129843832 129843832 C G TMEM209 Missense_Mutation p.G41A 0.17 tolerated(1) probably_damaging(1) TCGA-99-8033-01 7 133160209 133160209 C T EXOC4 Missense_Mutation p.P437L 0.09 deleterious(0.02) benign(0.055) TCGA-99-8033-01 7 141954928 141954928 G T PRSS58 Missense_Mutation p.S128Y 0.24 deleterious(0.01) benign(0.223) TCGA-99-8033-01 7 150384165 150384165 C A GIMAP2 Missense_Mutation p.H6Q 0.06 tolerated(0.62) benign(0.093) TCGA-99-8033-01 7 55863620 55863620 G A SEPT14 Missense_Mutation p.H429Y 0.14 deleterious_low_confidence(0) benign(0.049) TCGA-99-8033-01 7 57187572 57187572 C A ZNF479 Missense_Mutation p.G517V 0.19 deleterious(0.01) benign(0.046) TCGA-99-8033-01 7 64167291 64167291 T C ZNF107 Silent p.L203L 0.06 TCGA-99-8033-01 7 86991070 86991070 G T CROT Missense_Mutation p.G178V 0.13 tolerated(0.11) benign(0.183) TCGA-99-8033-01 7 92147008 92147008 T C PEX1 Missense_Mutation p.K274R 0.24 tolerated(0.29) benign(0.008) TCGA-99-8033-01 8 10468811 10468811 C A RP1L1 Missense_Mutation p.G933C 0.12 probably_damaging(0.997) TCGA-99-8033-01 8 144990735 144990735 G A PLEC Silent p.D4555D 0.22 TCGA-99-8033-01 8 24197078 24197078 C G ADAM28 Missense_Mutation p.A556G 0.26 tolerated(0.16) benign(0.086) TCGA-99-8033-01 8 2820144 2820144 G T CSMD1 Missense_Mutation p.P3158T 0.22 possibly_damaging(0.897) TCGA-99-8033-01 8 48649914 48649914 G C CEBPD Missense_Mutation p.P257A 0.26 tolerated(1) benign(0) TCGA-99-8033-01 8 49643135 49643135 G T EFCAB1 Missense_Mutation p.L95M 0.20 deleterious(0.02) benign(0.099) TCGA-99-8033-01 8 56436676 56436677 AG T XKR4 Frame_Shift_Del p.L616Sfs*6 0.28 TCGA-99-8033-01 8 61774771 61774771 T G CHD7 Missense_Mutation p.L2616R 0.33 possibly_damaging(0.731) TCGA-99-8033-01 8 77767868 77767868 T C ZFHX4 Missense_Mutation p.I2904T 0.20 possibly_damaging(0.805) TCGA-99-8033-01 8 97345788 97345788 G A PTDSS1 Silent p.K472K 0.07 TCGA-99-8033-01 9 100227242 100227242 G T TDRD7 Missense_Mutation p.A521S 0.21 deleterious(0) probably_damaging(0.978) TCGA-99-8033-01 9 104192165 104192165 C T ALDOB Missense_Mutation p.V66M 0.30 deleterious(0.03) possibly_damaging(0.661) TCGA-99-8033-01 9 133747590 133747590 G A ABL1 Silent p.V318V 0.36 TCGA-99-8033-01 9 139396253 139396253 G A NOTCH1 Missense_Mutation p.P1862L 0.08 deleterious(0) possibly_damaging(0.855) TCGA-99-8033-01 9 5081771 5081771 A T JAK2 Silent p.I827I 0.20 TCGA-99-8033-01 9 78749062 78749062 G - PCSK5 Frame_Shift_Del p.V416Sfs*9 0.23 TCGA-99-8033-01 9 86258454 86258454 C A IDNK Nonsense_Mutation p.S108* 0.35 TCGA-99-8033-01 X 112024168 112024168 C A AMOT Missense_Mutation p.G807C 0.16 unknown(0) TCGA-99-8033-01 X 125299273 125299273 G A DCAF12L2 Missense_Mutation p.S212F 0.16 deleterious(0) probably_damaging(1) TCGA-99-8033-01 X 128633737 128633738 - GC SMARCA1 Frame_Shift_Ins p.L417Afs*4 0.13 TCGA-99-8033-01 X 13764451 13764451 G T OFD1 Missense_Mutation p.Q177H 0.11 deleterious(0.01) probably_damaging(0.975) TCGA-99-8033-01 X 137717721 137717721 G C FGF13 Silent p.G176G 0.15 TCGA-99-8033-01 X 2408325 2408325 C T ZBED1 Missense_Mutation p.E146K 0.09 tolerated(0.34) probably_damaging(0.973) TCGA-99-8033-01 X 86773139 86773139 C A KLHL4 Silent p.A81A 0.11 TCGA-99-8033-01 X 91132951 91132951 C A PCDH11X Missense_Mutation p.T571N 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-99-8033-01 X 9864516 9864516 C T SHROOM2 Silent p.S856S 0.11 TCGA-99-AA5R-01 10 96018816 96018816 A C PLCE1 Silent p.A1241A 0.06 TCGA-99-AA5R-01 11 112088525 112088525 T C BCO2 Silent p.F556F 0.09 TCGA-99-AA5R-01 11 134074799 134074799 C A NCAPD3 Missense_Mutation p.A362S 0.10 tolerated(0.12) benign(0.022) TCGA-99-AA5R-01 11 30557717 30557717 T A MPPED2 Missense_Mutation p.D45V 0.11 tolerated(0.14) benign(0.105) TCGA-99-AA5R-01 11 56432039 56432039 G A OR5AR1 Missense_Mutation p.R293Q 0.09 deleterious(0.02) possibly_damaging(0.784) TCGA-99-AA5R-01 11 60161379 60161379 G A MS4A7 3'UTR 0.06 TCGA-99-AA5R-01 11 7981396 7981396 A T NLRP10 Missense_Mutation p.I588K 0.08 tolerated(0.13) benign(0.024) TCGA-99-AA5R-01 12 29604449 29604449 G T OVCH1 Silent p.R862R 0.09 TCGA-99-AA5R-01 12 45410303 45410303 C A DBX2 Missense_Mutation p.E262D 0.07 deleterious(0.03) benign(0.013) TCGA-99-AA5R-01 13 74269780 74269780 T A KLF12 Missense_Mutation p.E352D 0.05 tolerated(0.73) benign(0.039) TCGA-99-AA5R-01 14 26949349 26949349 C A NOVA1 Missense_Mutation p.G94V 0.12 deleterious(0) unknown(0) TCGA-99-AA5R-01 14 51288753 51288753 G A NIN Nonsense_Mutation p.Q8* 0.06 TCGA-99-AA5R-01 14 73959608 73959608 G C HEATR4 Intron 0.09 TCGA-99-AA5R-01 14 74363090 74363090 A C ZNF410 Missense_Mutation p.N98H 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.845) TCGA-99-AA5R-01 16 1616174 1616174 T A IFT140 Missense_Mutation p.Q630L 0.04 tolerated(0.31) benign(0.142) TCGA-99-AA5R-01 16 1616175 1616175 G A IFT140 Nonsense_Mutation p.Q630* 0.04 TCGA-99-AA5R-01 16 16215937 16215937 C T ABCC1 Nonsense_Mutation p.R1166* 0.08 TCGA-99-AA5R-01 17 2318523 2318523 T A AC006435.1 Silent p.P43P 0.04 TCGA-99-AA5R-01 17 73127374 73127374 A C NT5C Missense_Mutation p.D59E 0.09 tolerated(1) benign(0.001) TCGA-99-AA5R-01 18 13826298 13826298 C A MC5R Silent p.I178I 0.04 TCGA-99-AA5R-01 18 14179549 14179549 T A ANKRD20A5P RNA 0.11 TCGA-99-AA5R-01 18 22642616 22642616 G A ZNF521 3'UTR 0.07 TCGA-99-AA5R-01 18 2892249 2892249 T C EMILIN2 Silent p.H708H 0.07 TCGA-99-AA5R-01 19 50251681 50251681 T A TSKS Missense_Mutation p.S149C 0.04 deleterious(0) probably_damaging(0.999) TCGA-99-AA5R-01 19 50453351 50453351 G T SIGLEC11 Missense_Mutation p.A658E 0.08 tolerated(0.53) benign(0.005) TCGA-99-AA5R-01 19 51361388 51361388 A G KLK3 Missense_Mutation p.S104G 0.05 deleterious(0.01) possibly_damaging(0.817) TCGA-99-AA5R-01 19 51994993 51994993 G T SIGLEC12 Missense_Mutation p.Q564K 0.06 deleterious(0.03) benign(0.021) TCGA-99-AA5R-01 1 152283092 152283092 T C FLG Missense_Mutation p.K1424E 0.03 benign(0.292) TCGA-99-AA5R-01 1 152328502 152328502 G T FLG2 Nonsense_Mutation p.S587* 0.04 TCGA-99-AA5R-01 1 152586405 152586405 G T LCE3B Missense_Mutation p.R40I 0.09 deleterious_low_confidence(0) unknown(0) TCGA-99-AA5R-01 1 159802915 159802915 C T SLAMF8 Missense_Mutation p.P206L 0.07 deleterious(0) probably_damaging(0.974) TCGA-99-AA5R-01 1 186277016 186277016 C A PRG4 Missense_Mutation p.P722H 0.05 unknown(0) TCGA-99-AA5R-01 1 200017430 200017430 G T NR5A2 Missense_Mutation p.Q198H 0.07 tolerated(0.15) benign(0.005) TCGA-99-AA5R-01 1 207504623 207504623 C T CD55 Missense_Mutation p.P279S 0.05 tolerated(0.06) possibly_damaging(0.841) TCGA-99-AA5R-01 1 241797637 241797637 T C CHML Missense_Mutation p.I478V 0.14 tolerated(0.13) benign(0.002) TCGA-99-AA5R-01 20 19701848 19701848 C G SLC24A3 3'UTR 0.10 TCGA-99-AA5R-01 20 20030060 20030060 T C CRNKL1 Missense_Mutation p.I235V 0.07 tolerated(0.26) benign(0.088) TCGA-99-AA5R-01 20 45130394 45130394 T A ZNF334 Missense_Mutation p.K528N 0.04 tolerated(0.2) benign(0.261) TCGA-99-AA5R-01 21 28296640 28296640 G T ADAMTS5 Missense_Mutation p.P842Q 0.05 deleterious(0.03) possibly_damaging(0.46) TCGA-99-AA5R-01 21 46078123 46078123 G C KRTAP12-3 Missense_Mutation p.C76S 0.04 deleterious(0) probably_damaging(0.966) TCGA-99-AA5R-01 22 19365556 19365556 G A HIRA Silent p.P483P 0.05 TCGA-99-AA5R-01 22 32828531 32828531 C A BPIFC Splice_Site p.X327_splice 0.11 TCGA-99-AA5R-01 22 40661948 40661948 C G TNRC6B Missense_Mutation p.Q572E 0.05 tolerated(1) probably_damaging(0.974) TCGA-99-AA5R-01 2 189875596 189875596 G C COL3A1 Missense_Mutation p.V1412L 0.05 unknown(0) TCGA-99-AA5R-01 2 196753009 196753009 C A DNAH7 Silent p.S1793S 0.05 TCGA-99-AA5R-01 2 26667184 26667184 C G DRC1 Missense_Mutation p.R375G 0.07 deleterious(0) probably_damaging(0.997) TCGA-99-AA5R-01 2 80097045 80097045 C G CTNNA2 Missense_Mutation p.A190G 0.06 deleterious(0) benign(0.134) TCGA-99-AA5R-01 3 100447590 100447590 G T TFG Missense_Mutation p.Q101H 0.07 deleterious(0.02) possibly_damaging(0.897) TCGA-99-AA5R-01 3 195022791 195022791 C A ACAP2 Missense_Mutation p.G410V 0.03 deleterious(0) probably_damaging(1) TCGA-99-AA5R-01 4 13602882 13602882 C A BOD1L1 Missense_Mutation p.G1881V 0.06 benign(0.382) TCGA-99-AA5R-01 4 183713576 183713576 C A TENM3 Silent p.P1917P 0.07 TCGA-99-AA5R-01 4 187120167 187120167 G T CYP4V2 Missense_Mutation p.W244L 0.05 tolerated(1) benign(0) TCGA-99-AA5R-01 4 47163427 47163427 C T GABRB1 Silent p.V134V 0.08 TCGA-99-AA5R-01 4 68459040 68459040 A T STAP1 Missense_Mutation p.L264F 0.06 deleterious(0) probably_damaging(0.999) TCGA-99-AA5R-01 5 101834284 101834284 A T SLCO6A1 Missense_Mutation p.C89S 0.05 tolerated(0.13) possibly_damaging(0.798) TCGA-99-AA5R-01 5 31299685 31299685 C A CDH6 Missense_Mutation p.T253N 0.06 deleterious(0) benign(0.36) TCGA-99-AA5R-01 6 27419931 27419931 A T ZNF184 Silent p.T469T 0.05 TCGA-99-AA5R-01 6 33373283 33373283 G T KIFC1 Missense_Mutation p.D471Y 0.13 deleterious(0) probably_damaging(1) TCGA-99-AA5R-01 6 56373500 56373501 GT - DST Frame_Shift_Del p.L3733Gfs*21 0.14 TCGA-99-AA5R-01 7 100240949 100240949 C A ACTL6B Missense_Mutation p.G401C 0.09 deleterious(0) probably_damaging(0.998) TCGA-99-AA5R-01 7 129950807 129950807 C A CPA4 Missense_Mutation p.A325D 0.04 deleterious(0.01) probably_damaging(0.961) TCGA-99-AA5R-01 7 141767223 141767223 C A MGAM Intron 0.08 TCGA-99-AA5R-01 7 143748150 143748150 C A OR2A5 Nonsense_Mutation p.S219* 0.04 TCGA-99-AA5R-01 7 53103568 53103568 G A POM121L12 Nonsense_Mutation p.W68* 0.12 TCGA-99-AA5R-01 8 105257240 105257240 G T RIMS2 Missense_Mutation p.R1144L 0.08 deleterious_low_confidence(0) benign(0.421) TCGA-99-AA5R-01 8 87473528 87473528 G A WWP1 Missense_Mutation p.G859R 0.07 deleterious(0) probably_damaging(1) TCGA-99-AA5R-01 X 100880021 100880021 G T ARMCX3 Missense_Mutation p.A18S 0.05 deleterious(0) probably_damaging(0.935) TCGA-99-AA5R-01 X 107823795 107823795 T A COL4A5 Silent p.P271P 0.05 TCGA-99-AA5R-01 X 12735197 12735197 G A FRMPD4 Silent p.L873L 0.04 TCGA-99-AA5R-01 X 130411062 130411062 C A IGSF1 Missense_Mutation p.S825I 0.06 deleterious(0.04) possibly_damaging(0.601) TCGA-99-AA5R-01 X 37029298 37029298 G T FAM47C Nonsense_Mutation p.G939* 0.05 TCGA-99-AA5R-01 X 37029299 37029299 G T FAM47C Missense_Mutation p.G939V 0.05 deleterious(0) probably_damaging(0.96) TCGA-99-AA5R-01 X 54956971 54956971 G T TRO Nonsense_Mutation p.G1272* 0.07 TCGA-99-AA5R-01 X 78010867 78010867 C A LPAR4 Silent p.L167L 0.06 TCGA-J2-8192-01 10 17087977 17087977 T C CUBN Missense_Mutation p.D1149G 0.16 tolerated(0.34) benign(0.002) TCGA-J2-8192-01 11 111166792 111166792 G A COLCA1 3'UTR 0.08 TCGA-J2-8192-01 11 123508977 123508977 G T SCN3B Silent p.V167V 0.09 TCGA-J2-8192-01 11 34162078 34162078 C G NAT10 Missense_Mutation p.L851V 0.20 tolerated(0.28) benign(0.405) TCGA-J2-8192-01 11 35456318 35456318 C A PAMR1 Missense_Mutation p.K473N 0.08 tolerated(0.41) probably_damaging(0.948) TCGA-J2-8192-01 11 4843482 4843482 C A OR51F2 Silent p.I289I 0.05 TCGA-J2-8192-01 11 57983102 57983102 C G OR1S1 Missense_Mutation p.P296A 0.10 deleterious(0) probably_damaging(1) TCGA-J2-8192-01 11 62389341 62389341 G C B3GAT3 Missense_Mutation p.L27V 0.11 tolerated(0.06) benign(0.03) TCGA-J2-8192-01 11 7324582 7324582 G A SYT9 Missense_Mutation p.R153H 0.16 tolerated(0.19) benign(0.391) TCGA-J2-8192-01 12 112451258 112451258 G A ERP29 5'UTR 0.11 TCGA-J2-8192-01 12 50355845 50355845 C T AQP5 Silent p.F15F 0.08 TCGA-J2-8192-01 12 56648430 56648430 G C ANKRD52 Missense_Mutation p.L209V 0.16 deleterious(0.02) benign(0.039) TCGA-J2-8192-01 12 57113686 57113687 GG - NACA Frame_Shift_Del p.P543Ffs*25 0.14 TCGA-J2-8192-01 12 57113813 57113819 GAGTGGT CAG NACA Frame_Shift_Del p.T499Lfs*2 0.17 TCGA-J2-8192-01 12 990073 990073 A G WNK1 Missense_Mutation p.M1007V 0.14 tolerated(0.73) benign(0.007) TCGA-J2-8192-01 13 21721420 21721420 A G SAP18 Missense_Mutation p.D153G 0.20 deleterious(0.01) possibly_damaging(0.513) TCGA-J2-8192-01 13 76427232 76427232 G A LMO7 Missense_Mutation p.E1224K 0.15 deleterious(0) probably_damaging(0.989) TCGA-J2-8192-01 14 21553927 21553927 G A ARHGEF40 Missense_Mutation p.R1347Q 0.13 tolerated(0.38) benign(0.319) TCGA-J2-8192-01 14 58063588 58063588 G A SLC35F4 Missense_Mutation p.H10Y 0.13 tolerated_low_confidence(0.08) benign(0) TCGA-J2-8192-01 14 61518549 61518549 C A SLC38A6 Missense_Mutation p.F365L 0.17 deleterious(0.01) benign(0.259) TCGA-J2-8192-01 14 64165370 64165370 G T SGPP1 Missense_Mutation p.L231I 0.12 deleterious(0.02) benign(0.2) TCGA-J2-8192-01 14 77493096 77493096 T C IRF2BPL Missense_Mutation p.K347R 0.22 tolerated(0.06) unknown(0) TCGA-J2-8192-01 15 71124557 71124557 C T LARP6 Missense_Mutation p.R437H 0.05 deleterious(0.01) probably_damaging(0.95) TCGA-J2-8192-01 16 25258712 25258712 C T ZKSCAN2 Splice_Site p.X269_splice 0.07 TCGA-J2-8192-01 16 48138271 48138271 C T ABCC12 Silent p.K894K 0.21 TCGA-J2-8192-01 17 27208843 27208843 G A FLOT2 Silent p.A301A 0.13 TCGA-J2-8192-01 17 4802325 4802325 T G CHRNE Missense_Mutation p.S433R 0.14 tolerated(0.13) possibly_damaging(0.717) TCGA-J2-8192-01 17 48226726 48226726 C T PPP1R9B Missense_Mutation p.E383K 0.15 deleterious(0.05) benign(0.076) TCGA-J2-8192-01 17 48626442 48626442 G T SPATA20 Missense_Mutation p.W185C 0.16 deleterious(0) probably_damaging(0.993) TCGA-J2-8192-01 17 74394355 74394355 G A UBE2O Missense_Mutation p.A669V 0.20 tolerated(0.36) benign(0.003) TCGA-J2-8192-01 17 78078713 78078713 T C GAA Missense_Mutation p.Y110H 0.11 deleterious(0) probably_damaging(0.951) TCGA-J2-8192-01 17 80684842 80684842 C T FN3KRP Missense_Mutation p.S242L 0.13 deleterious(0.01) possibly_damaging(0.869) TCGA-J2-8192-01 18 48584593 48584593 C T SMAD4 Nonsense_Mutation p.Q256* 0.07 TCGA-J2-8192-01 19 1785674 1785674 C A ATP8B3 Nonsense_Mutation p.E1063* 0.19 TCGA-J2-8192-01 19 19823380 19823380 G C ZNF14 Missense_Mutation p.S237C 0.22 deleterious(0.04) probably_damaging(0.914) TCGA-J2-8192-01 19 46807230 46807230 G A HIF3A Silent p.L34L 0.20 TCGA-J2-8192-01 19 48733816 48733816 A G CARD8 Missense_Mutation p.I305T 0.22 tolerated(0.09) probably_damaging(0.911) TCGA-J2-8192-01 19 8367855 8367855 T C CD320 Missense_Mutation p.E171G 0.11 tolerated(0.17) benign(0.205) TCGA-J2-8192-01 1 109773541 109773541 A T SARS Silent p.T163T 0.15 TCGA-J2-8192-01 1 110884074 110884074 C T RBM15 Missense_Mutation p.R683C 0.14 tolerated(0.1) possibly_damaging(0.795) TCGA-J2-8192-01 1 11716117 11716117 G A FBXO44 Silent p.R75R 0.18 TCGA-J2-8192-01 1 153973372 153973372 C T NUP210L Silent p.E1782E 0.05 TCGA-J2-8192-01 1 1559245 1559245 C G MIB2 Missense_Mutation p.D228E 0.20 deleterious(0) probably_damaging(0.999) TCGA-J2-8192-01 1 161953940 161953940 C T OLFML2B Missense_Mutation p.R593H 0.20 deleterious(0) probably_damaging(0.999) TCGA-J2-8192-01 1 177001612 177001612 G C ASTN1 Missense_Mutation p.S282W 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.524) TCGA-J2-8192-01 1 215793829 215793829 C G KCTD3 Missense_Mutation p.L773V 0.03 deleterious_low_confidence(0.01) benign(0.003) TCGA-J2-8192-01 1 225155275 225155275 T A DNAH14 Missense_Mutation p.F214Y 0.15 tolerated(0.07) possibly_damaging(0.729) TCGA-J2-8192-01 1 247875281 247875281 G A OR6F1 Silent p.H259H 0.15 TCGA-J2-8192-01 1 38197242 38197242 G T EPHA10 Missense_Mutation p.Q502K 0.03 tolerated(0.35) benign(0.061) TCGA-J2-8192-01 1 44463258 44463258 C T SLC6A9 Missense_Mutation p.G694S 0.15 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-J2-8192-01 1 57341845 57341845 T A C8A Missense_Mutation p.Y143N 0.06 deleterious(0) possibly_damaging(0.65) TCGA-J2-8192-01 20 40827935 40827935 G A PTPRT Silent p.S812S 0.03 TCGA-J2-8192-01 20 47887190 47887190 C G ZNFX1 Missense_Mutation p.G387R 0.15 deleterious(0) probably_damaging(0.999) TCGA-J2-8192-01 20 5923132 5923132 G A TRMT6 Missense_Mutation p.T323I 0.21 tolerated(0.36) benign(0.001) TCGA-J2-8192-01 20 62642703 62642703 G C PRPF6 Silent p.R457R 0.23 TCGA-J2-8192-01 2 179516217 179516217 C A TTN Silent p.L13170L 0.07 TCGA-J2-8192-01 2 180815274 180815274 T C CWC22 Missense_Mutation p.D702G 0.18 tolerated_low_confidence(0.19) benign(0) TCGA-J2-8192-01 2 202137461 202137461 T G CASP8 Missense_Mutation p.L230R 0.08 deleterious(0) probably_damaging(0.997) TCGA-J2-8192-01 2 210867501 210867501 T G RPE Missense_Mutation p.M39R 0.15 deleterious(0) probably_damaging(0.976) TCGA-J2-8192-01 2 3727515 3727515 G A ALLC Missense_Mutation p.V77M 0.12 deleterious(0.02) probably_damaging(0.989) TCGA-J2-8192-01 2 69093006 69093006 C T BMP10 Silent p.P344P 0.15 TCGA-J2-8192-01 2 71043960 71043960 C T CLEC4F Missense_Mutation p.E185K 0.14 deleterious(0.04) benign(0.013) TCGA-J2-8192-01 3 12626023 12626023 G A RAF1 Missense_Mutation p.P646L 0.19 deleterious(0) benign(0.383) TCGA-J2-8192-01 3 183896833 183896834 - G AP2M1 Frame_Shift_Ins p.M89Dfs*22 0.10 TCGA-J2-8192-01 3 44492401 44492401 C T ZNF445 Missense_Mutation p.D218N 0.22 tolerated(0.72) possibly_damaging(0.539) TCGA-J2-8192-01 3 52544403 52544403 C T STAB1 Silent p.C889C 0.19 TCGA-J2-8192-01 4 121706213 121706213 C A PRDM5 Nonsense_Mutation p.E408* 0.13 TCGA-J2-8192-01 4 40115055 40115055 C T N4BP2 Nonsense_Mutation p.Q531* 0.13 TCGA-J2-8192-01 4 6925380 6925380 G T TBC1D14 Missense_Mutation p.R88S 0.19 tolerated_low_confidence(0.05) benign(0.025) TCGA-J2-8192-01 5 140529911 140529911 G A PCDHB6 Missense_Mutation p.V25M 0.18 deleterious(0.01) benign(0.033) TCGA-J2-8192-01 5 145849135 145849135 C T TCERG1 Silent p.I409I 0.24 TCGA-J2-8192-01 5 177633752 177633752 A G HNRNPAB Missense_Mutation p.H133R 0.22 deleterious(0.03) benign(0.261) TCGA-J2-8192-01 5 79615953 79615953 C A SPZ1 5'UTR 0.14 TCGA-J2-8192-01 6 138539390 138539390 A T PBOV1 Missense_Mutation p.F48Y 0.29 tolerated_low_confidence(0.09) benign(0.004) TCGA-J2-8192-01 6 35392297 35392297 C G PPARD Silent p.L273L 0.05 TCGA-J2-8192-01 6 43266262 43266262 G A SLC22A7 Missense_Mutation p.A56T 0.19 tolerated(0.2) benign(0.016) TCGA-J2-8192-01 7 140227117 140227117 C A DENND2A Splice_Site p.X835_splice 0.21 TCGA-J2-8192-01 7 149490705 149490705 C G SSPO RNA 0.25 TCGA-J2-8192-01 7 154738232 154738232 G C PAXIP1 Silent p.A1041A 0.28 TCGA-J2-8192-01 7 44184668 44184668 G A GCK 3'UTR 0.12 TCGA-J2-8192-01 7 55242466 55242480 GAATTAAGAGAAGCA - EGFR In_Frame_Del p.E746_A750del 0.34 TCGA-J2-8192-01 7 75643175 75643175 C T STYXL1 Missense_Mutation p.G113D 0.26 deleterious(0) possibly_damaging(0.906) TCGA-J2-8192-01 7 92762947 92762947 G T SAMD9L Missense_Mutation p.Q780K 0.08 deleterious(0) probably_damaging(0.976) TCGA-J2-8192-01 8 131797655 131797655 C T ADCY8 Missense_Mutation p.V1043M 0.11 deleterious(0.01) benign(0.008) TCGA-J2-8192-01 8 21977855 21977855 G A HR Missense_Mutation p.L926F 0.19 tolerated(0.34) benign(0.097) TCGA-J2-8192-01 8 57353913 57353913 A G PENK Missense_Mutation p.L241P 0.05 deleterious(0.02) possibly_damaging(0.864) TCGA-J2-8192-01 8 86360269 86360277 AAGCTGCGG - CA3 In_Frame_Del p.K224_R226del 0.11 TCGA-J2-8192-01 8 86360390 86360390 G A CA3 3'UTR 0.15 TCGA-J2-8192-01 8 86360412 86360412 G A CA3 3'UTR 0.14 TCGA-J2-8192-01 9 138719300 138719300 C T CAMSAP1 Silent p.A392A 0.21 TCGA-J2-8192-01 9 37731098 37731098 C T FRMPD1 Nonsense_Mutation p.Q286* 0.32 TCGA-J2-8192-01 9 79318530 79318530 C T PRUNE2 Missense_Mutation p.G2667S 0.16 tolerated(1) benign(0.003) TCGA-J2-8192-01 X 117526804 117526804 G A WDR44 Silent p.E132E 0.26 TCGA-J2-8192-01 X 22291956 22291956 C T ZNF645 Missense_Mutation p.A283V 0.22 tolerated(0.29) benign(0.004) TCGA-J2-8192-01 X 30327300 30327300 C A NR0B1 Missense_Mutation p.A61S 0.26 tolerated_low_confidence(0.21) benign(0.005) TCGA-J2-8194-01 10 108489815 108489815 C T SORCS1 Silent p.V339V 0.13 TCGA-J2-8194-01 10 113916902 113916902 G T GPAM Intron 0.12 TCGA-J2-8194-01 10 116887387 116887387 T A ATRNL1 Missense_Mutation p.N174K 0.20 deleterious(0.02) probably_damaging(0.997) TCGA-J2-8194-01 10 125557567 125557567 G A CPXM2 Missense_Mutation p.R272C 0.13 deleterious(0) probably_damaging(1) TCGA-J2-8194-01 10 45878049 45878049 C T ALOX5 Missense_Mutation p.T90M 0.29 deleterious(0) benign(0.24) TCGA-J2-8194-01 10 75532206 75532206 G A AC022400.2 Missense_Mutation p.A58V 0.17 unknown(0) TCGA-J2-8194-01 10 93904753 93904753 G T CPEB3 Missense_Mutation p.R438S 0.35 deleterious(0.02) possibly_damaging(0.833) TCGA-J2-8194-01 11 17531361 17531361 G T USH1C Missense_Mutation p.P519T 0.18 tolerated_low_confidence(0.3) benign(0.003) TCGA-J2-8194-01 11 18729501 18729501 G T IGSF22 Missense_Mutation p.P1044T 0.35 tolerated(0.1) benign(0.005) TCGA-J2-8194-01 11 24750793 24750793 G T LUZP2 Missense_Mutation p.K47N 0.19 deleterious(0) probably_damaging(0.994) TCGA-J2-8194-01 11 35453994 35453994 C T PAMR1 Nonsense_Mutation p.W708* 0.20 TCGA-J2-8194-01 11 45671282 45671282 A T CHST1 Missense_Mutation p.S398T 0.30 deleterious(0.03) benign(0.068) TCGA-J2-8194-01 11 5221680 5221680 A T OR51V1 Missense_Mutation p.L84Q 0.30 deleterious(0) probably_damaging(0.981) TCGA-J2-8194-01 11 6007327 6007327 G A OR52L1 Silent p.L278L 0.22 TCGA-J2-8194-01 11 71209481 71209481 C T NADSYN1 Silent p.A659A 0.19 TCGA-J2-8194-01 11 82643558 82643558 C G C11orf82 Missense_Mutation p.P393R 0.36 tolerated(0.05) possibly_damaging(0.839) TCGA-J2-8194-01 12 102572513 102572513 C T PARPBP Silent p.I383I 0.30 TCGA-J2-8194-01 12 120576207 120576209 CCT - GCN1L1 In_Frame_Del p.E2056del 0.18 TCGA-J2-8194-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.38 deleterious(0.04) probably_damaging(0.993) TCGA-J2-8194-01 12 29598234 29598234 C A OVCH1 Missense_Mutation p.S953I 0.10 deleterious(0.02) possibly_damaging(0.693) TCGA-J2-8194-01 12 32975440 32975440 A T PKP2 Missense_Mutation p.S644R 0.10 deleterious(0) possibly_damaging(0.89) TCGA-J2-8194-01 12 53184100 53184100 T C KRT3 Missense_Mutation p.Y538C 0.20 tolerated(0.17) unknown(0) TCGA-J2-8194-01 13 101717812 101717812 G T NALCN Nonsense_Mutation p.C1516* 0.20 TCGA-J2-8194-01 13 110866345 110866345 C A COL4A1 Silent p.P54P 0.18 TCGA-J2-8194-01 13 25049728 25049728 T C PARP4 Missense_Mutation p.Q599R 0.20 tolerated(0.17) benign(0.008) TCGA-J2-8194-01 13 53029601 53029602 - T CKAP2 5'Flank 0.23 TCGA-J2-8194-01 14 20019994 20019994 C T POTEM Missense_Mutation p.G76D 0.05 tolerated_low_confidence(0.06) probably_damaging(0.994) TCGA-J2-8194-01 14 22447359 22447359 G C TRAV8-6 Silent p.%3D 0.48 TCGA-J2-8194-01 14 60212923 60212923 G T RTN1 Missense_Mutation p.A173E 0.15 tolerated(0.06) benign(0.223) TCGA-J2-8194-01 14 89307251 89307251 G T TTC8 Missense_Mutation p.G103V 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-J2-8194-01 14 99182568 99182568 A G C14orf177 Missense_Mutation p.R14G 0.42 deleterious_low_confidence(0) benign(0.291) TCGA-J2-8194-01 15 34077931 34077931 G A RYR3 Missense_Mutation p.E3113K 0.15 benign(0.041) TCGA-J2-8194-01 15 59387128 59387128 T G RNF111 3'UTR 0.35 TCGA-J2-8194-01 15 85461820 85461820 G T SLC28A1 Missense_Mutation p.Q287H 0.16 deleterious(0) probably_damaging(0.995) TCGA-J2-8194-01 16 28845848 28845848 C T ATXN2L Missense_Mutation p.S756L 0.28 deleterious(0.02) benign(0.213) TCGA-J2-8194-01 16 312437 312437 G A ITFG3 Missense_Mutation p.G286S 0.17 tolerated(0.2) benign(0.13) TCGA-J2-8194-01 16 3304752 3304752 C T MEFV Missense_Mutation p.A106T 0.08 tolerated(0.67) benign(0.012) TCGA-J2-8194-01 16 58031233 58031233 G A ZNF319 Missense_Mutation p.R313W 0.08 deleterious(0) probably_damaging(0.997) TCGA-J2-8194-01 16 74908315 74908315 C T WDR59 Missense_Mutation p.R906Q 0.19 tolerated(0.23) benign(0.026) TCGA-J2-8194-01 16 76486402 76486402 C A CNTNAP4 Intron 0.13 TCGA-J2-8194-01 16 83704553 83704553 C T CDH13 Silent p.N467N 0.16 TCGA-J2-8194-01 17 10224996 10224996 T A MYH13 Silent p.A988A 0.22 TCGA-J2-8194-01 17 1792036 1792036 G T RPA1 Missense_Mutation p.C481F 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-J2-8194-01 17 3195638 3195638 G C OR3A1 Missense_Mutation p.T80S 0.10 tolerated(0.07) possibly_damaging(0.725) TCGA-J2-8194-01 17 40135610 40135610 T A DNAJC7 Missense_Mutation p.E352V 0.47 deleterious(0) probably_damaging(0.983) TCGA-J2-8194-01 17 44101553 44101553 G A MAPT 3'UTR 0.09 TCGA-J2-8194-01 17 5983970 5983970 C - WSCD1 5'UTR 0.26 TCGA-J2-8194-01 17 65026856 65026856 A T CACNG4 Silent p.R240R 0.16 TCGA-J2-8194-01 17 73735773 73735773 G A ITGB4 Silent p.P747P 0.15 TCGA-J2-8194-01 17 80758792 80758792 G T TBCD Missense_Mutation p.Q290H 0.11 tolerated(0.19) benign(0.02) TCGA-J2-8194-01 18 54339866 54339866 C T WDR7 Silent p.D40D 0.06 TCGA-J2-8194-01 18 65178663 65178663 C G DSEL Missense_Mutation p.L1071F 0.18 deleterious(0.03) possibly_damaging(0.76) TCGA-J2-8194-01 18 6859832 6859832 C G ARHGAP28 Missense_Mutation p.T62S 0.20 tolerated(0.26) benign(0.017) TCGA-J2-8194-01 19 10599954 10599958 GTTTC - KEAP1 Frame_Shift_Del p.E540Rfs*32 0.29 TCGA-J2-8194-01 19 1219384 1219384 A T STK11 Nonsense_Mutation p.K146* 0.29 TCGA-J2-8194-01 19 30936564 30936564 G A ZNF536 Missense_Mutation p.G699R 0.62 deleterious(0.01) probably_damaging(1) TCGA-J2-8194-01 19 36430423 36430423 C A LRFN3 Nonsense_Mutation p.C32* 0.20 TCGA-J2-8194-01 19 37619969 37619971 ATT - ZNF420 3'UTR 0.10 TCGA-J2-8194-01 19 40903823 40903823 C A PRX Missense_Mutation p.G146W 0.37 deleterious(0) probably_damaging(0.984) TCGA-J2-8194-01 19 44056275 44056275 C A XRCC1 Missense_Mutation p.V326L 0.25 deleterious(0) probably_damaging(0.961) TCGA-J2-8194-01 19 44681231 44681231 T C ZNF226 Missense_Mutation p.C606R 0.26 tolerated(0.12) probably_damaging(0.972) TCGA-J2-8194-01 19 47228789 47228789 G A STRN4 Silent p.T462T 0.15 TCGA-J2-8194-01 19 48342910 48342910 G T CRX Missense_Mutation p.A196S 0.25 tolerated(0.7) benign(0.085) TCGA-J2-8194-01 19 55669071 55669071 C A TNNI3 5'UTR 0.40 TCGA-J2-8194-01 19 56545069 56545069 C T NLRP5 Missense_Mutation p.S870F 0.15 deleterious(0) probably_damaging(0.962) TCGA-J2-8194-01 19 57175631 57175631 G T ZNF835 Silent p.G312G 0.33 TCGA-J2-8194-01 19 57327835 57327835 C T PEG3 Missense_Mutation p.G659S 0.16 tolerated(0.57) benign(0.041) TCGA-J2-8194-01 19 7614949 7614949 G A PNPLA6 Missense_Mutation p.A598T 0.20 tolerated(0.07) benign(0.307) TCGA-J2-8194-01 19 9061952 9061952 C A MUC16 Missense_Mutation p.E8498D 0.43 unknown(0) TCGA-J2-8194-01 1 103488338 103488338 C A COL11A1 Missense_Mutation p.G402V 0.11 probably_damaging(0.999) TCGA-J2-8194-01 1 118558666 118558666 G T SPAG17 Silent p.I1403I 0.17 TCGA-J2-8194-01 1 149871694 149871694 G T BOLA1 Missense_Mutation p.A28S 0.28 tolerated(0.62) benign(0.003) TCGA-J2-8194-01 1 151847213 151847213 T C THEM4 3'UTR 0.22 TCGA-J2-8194-01 1 152285936 152285936 C T FLG Missense_Mutation p.E476K 0.03 probably_damaging(0.928) TCGA-J2-8194-01 1 154245953 154245953 C G HAX1 Missense_Mutation p.F65L 0.13 deleterious(0.03) benign(0.074) TCGA-J2-8194-01 1 169588373 169588373 T A SELP Missense_Mutation p.I30F 0.32 deleterious(0.04) possibly_damaging(0.447) TCGA-J2-8194-01 1 178514808 178514808 G T C1ORF220 Missense_Mutation p.G65V 0.21 probably_damaging(0.979) TCGA-J2-8194-01 1 182909474 182909474 C T SHCBP1L Missense_Mutation p.E254K 0.12 deleterious(0) possibly_damaging(0.779) TCGA-J2-8194-01 1 184706191 184706191 G A EDEM3 Silent p.L105L 0.06 TCGA-J2-8194-01 1 196887591 196887591 C T CFHR4 3'UTR 0.15 TCGA-J2-8194-01 1 197069578 197069578 T C ASPM Missense_Mutation p.S2935G 0.24 tolerated(0.12) possibly_damaging(0.903) TCGA-J2-8194-01 1 216595492 216595492 G T USH2A Silent p.R63R 0.14 TCGA-J2-8194-01 1 217793461 217793461 G A GPATCH2 Missense_Mutation p.S146F 0.15 deleterious(0) possibly_damaging(0.498) TCGA-J2-8194-01 1 223284821 223284821 G A TLR5 Missense_Mutation p.P518L 0.10 deleterious(0.01) probably_damaging(0.92) TCGA-J2-8194-01 1 228003884 228003884 G T PRSS38 Missense_Mutation p.G81V 0.10 deleterious(0) probably_damaging(0.994) TCGA-J2-8194-01 1 228432121 228432121 T C OBSCN Silent p.D1202D 0.13 TCGA-J2-8194-01 1 228646151 228646151 G T HIST3H2BB Silent p.L107L 0.14 TCGA-J2-8194-01 1 236154282 236154282 G T NID1 Silent p.T944T 0.15 TCGA-J2-8194-01 1 238051702 238051702 C T ZP4 Missense_Mutation p.C170Y 0.31 deleterious(0.01) probably_damaging(0.994) TCGA-J2-8194-01 1 26664533 26664533 G A AIM1L Silent p.C285C 0.23 TCGA-J2-8194-01 1 31210499 31210499 C G LAPTM5 Missense_Mutation p.K186N 0.41 tolerated(0.09) benign(0.023) TCGA-J2-8194-01 1 3428683 3428683 T A MEGF6 Missense_Mutation p.E288V 0.17 deleterious(0) probably_damaging(0.998) TCGA-J2-8194-01 1 70541814 70541814 C A LRRC7 Silent p.R1391R 0.38 TCGA-J2-8194-01 1 86920985 86920985 G T CLCA2 Missense_Mutation p.M869I 0.38 tolerated(0.87) benign(0) TCGA-J2-8194-01 20 35684010 35684010 T A RBL1 Silent p.I471I 0.40 TCGA-J2-8194-01 20 46264946 46264946 G T NCOA3 Missense_Mutation p.A606S 0.33 tolerated(1) benign(0.001) TCGA-J2-8194-01 21 14417521 14417521 G T RNU6-614P 5'Flank 0.11 TCGA-J2-8194-01 21 35247740 35247740 A T ITSN1 Missense_Mutation p.Q1419L 0.37 deleterious(0) probably_damaging(0.991) TCGA-J2-8194-01 21 37758546 37758546 G A CHAF1B Missense_Mutation p.D38N 0.19 deleterious(0) probably_damaging(0.997) TCGA-J2-8194-01 21 44838388 44838388 G A SIK1 Missense_Mutation p.P499L 0.09 deleterious(0.03) benign(0.154) TCGA-J2-8194-01 21 45736321 45736321 G T PFKL Missense_Mutation p.V284F 0.15 deleterious(0.01) benign(0.001) TCGA-J2-8194-01 22 17601203 17601203 G A CECR6 Missense_Mutation p.P272L 0.15 deleterious_low_confidence(0.01) unknown(0) TCGA-J2-8194-01 22 22550564 22550564 C T IGLV6-57 Missense_Mutation p.R81W 0.10 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-J2-8194-01 22 28310311 28310311 A G PITPNB Silent p.V15V 0.09 TCGA-J2-8194-01 22 36700084 36700084 T C MYH9 Missense_Mutation p.I783V 0.25 benign(0.194) TCGA-J2-8194-01 22 40060100 40060100 G A CACNA1I Missense_Mutation p.R1201H 0.61 deleterious(0) possibly_damaging(0.522) TCGA-J2-8194-01 22 51160716 51160716 G T SHANK3 Silent p.G1501G 0.16 TCGA-J2-8194-01 2 121742248 121742248 G A GLI2 Missense_Mutation p.E629K 0.21 deleterious(0.05) probably_damaging(0.991) TCGA-J2-8194-01 2 128044495 128044495 C A ERCC3 Missense_Mutation p.A376S 0.34 tolerated(0.59) benign(0.021) TCGA-J2-8194-01 2 160035524 160035524 G T TANC1 Missense_Mutation p.G787V 0.25 tolerated(0.17) benign(0.066) TCGA-J2-8194-01 2 163083063 163083063 A T FAP Missense_Mutation p.Y54N 0.25 tolerated(0.14) probably_damaging(0.999) TCGA-J2-8194-01 2 171264279 171264279 G T MYO3B Missense_Mutation p.D859Y 0.33 deleterious(0) probably_damaging(0.996) TCGA-J2-8194-01 2 232156124 232156124 A T ARMC9 Missense_Mutation p.Q562L 0.24 deleterious(0) probably_damaging(0.991) TCGA-J2-8194-01 2 234581345 234581345 G A UGT1A9 Silent p.T255T 0.29 TCGA-J2-8194-01 2 234959503 234959503 T A SPP2 Missense_Mutation p.W25R 0.30 tolerated(0.2) benign(0.006) TCGA-J2-8194-01 2 235950746 235950746 C G SH3BP4 Missense_Mutation p.L445V 0.17 deleterious(0.01) probably_damaging(0.949) TCGA-J2-8194-01 2 31489410 31489410 A T EHD3 Missense_Mutation p.K483M 0.32 deleterious(0) probably_damaging(0.937) TCGA-J2-8194-01 2 44040323 44040323 A G ABCG5 Missense_Mutation p.F630L 0.25 deleterious(0) possibly_damaging(0.786) TCGA-J2-8194-01 3 102157401 102157401 T C ZPLD1 Missense_Mutation p.Y40H 0.13 tolerated(0.12) probably_damaging(0.945) TCGA-J2-8194-01 3 126220755 126220755 C T UROC1 Nonsense_Mutation p.W313* 0.16 TCGA-J2-8194-01 3 142742815 142742815 A T U2SURP Splice_Site p.X411_splice 0.16 TCGA-J2-8194-01 3 180337699 180337699 G T CCDC39 Missense_Mutation p.N686K 0.27 tolerated(0.25) benign(0.012) TCGA-J2-8194-01 3 18390868 18390868 G T SATB1 Missense_Mutation p.Q728K 0.14 deleterious(0) probably_damaging(0.994) TCGA-J2-8194-01 3 47378117 47378117 G A KLHL18 Missense_Mutation p.V331M 0.17 deleterious(0) probably_damaging(0.93) TCGA-J2-8194-01 3 48622350 48622350 C T COL7A1 Missense_Mutation p.G1335E 0.41 unknown(0) TCGA-J2-8194-01 3 52406055 52406055 G A DNAH1 Missense_Mutation p.V2207M 0.19 benign(0.269) TCGA-J2-8194-01 3 54914846 54914846 G T CACNA2D3 Missense_Mutation p.G623V 0.18 deleterious(0) probably_damaging(1) TCGA-J2-8194-01 3 6903075 6903075 C G GRM7 5'UTR 0.20 TCGA-J2-8194-01 3 89457224 89457224 G T EPHA3 Missense_Mutation p.G569C 0.15 tolerated(0.07) benign(0.003) TCGA-J2-8194-01 3 97251210 97251210 G T EPHA6 Nonsense_Mutation p.G737* 0.16 TCGA-J2-8194-01 4 101947149 101947149 T A PPP3CA Missense_Mutation p.N480I 0.18 deleterious(0) possibly_damaging(0.873) TCGA-J2-8194-01 4 126328085 126328085 T C FAT4 Silent p.S1786S 0.12 TCGA-J2-8194-01 4 140811953 140811953 G A MAML3 Missense_Mutation p.P213S 0.19 benign(0.006) TCGA-J2-8194-01 4 142949899 142949899 G T INPP4B 3'UTR 0.13 TCGA-J2-8194-01 4 169923221 169923221 C A CBR4 Splice_Site p.X179_splice 0.20 TCGA-J2-8194-01 4 169923222 169923222 C T CBR4 Missense_Mutation p.G179R 0.21 deleterious(0) probably_damaging(0.991) TCGA-J2-8194-01 4 38776410 38776410 G T TLR10 Missense_Mutation p.H268N 0.44 tolerated(0.14) benign(0.216) TCGA-J2-8194-01 5 120021985 120021985 A T PRR16 Missense_Mutation p.I143F 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.613) TCGA-J2-8194-01 5 140562629 140562629 T A PCDHB16 Missense_Mutation p.N165K 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-J2-8194-01 5 140563817 140563817 G T PCDHB16 Silent p.V561V 0.28 TCGA-J2-8194-01 5 149452885 149452885 G T CSF1R Missense_Mutation p.A354D 0.32 tolerated(0.24) benign(0.001) TCGA-J2-8194-01 5 150078094 150078094 C T RBM22 Missense_Mutation p.V80I 0.14 tolerated(0.07) benign(0.134) TCGA-J2-8194-01 5 154393470 154393470 C A KIF4B Silent p.R17R 0.29 TCGA-J2-8194-01 5 178581153 178581153 C T ADAMTS2 Missense_Mutation p.D427N 0.38 deleterious(0) probably_damaging(0.955) TCGA-J2-8194-01 5 22142550 22142550 A G CDH12 Intron 0.29 TCGA-J2-8194-01 5 33576549 33576549 C A ADAMTS12 Missense_Mutation p.M1194I 0.13 tolerated(0.33) benign(0) TCGA-J2-8194-01 5 68715775 68715775 C T MARVELD2 Missense_Mutation p.S188L 0.18 deleterious(0) probably_damaging(1) TCGA-J2-8194-01 6 102134086 102134086 G A GRIK2 Missense_Mutation p.R270Q 0.30 tolerated(0.15) possibly_damaging(0.849) TCGA-J2-8194-01 6 107390363 107390363 C A BEND3 Nonsense_Mutation p.E678* 0.50 TCGA-J2-8194-01 6 1611214 1611214 C G FOXC1 Missense_Mutation p.D178E 0.35 deleterious(0.01) probably_damaging(0.964) TCGA-J2-8194-01 6 42196348 42196348 T A TRERF1 Missense_Mutation p.E1113V 0.46 deleterious(0) benign(0.403) TCGA-J2-8194-01 6 42237013 42237013 T C TRERF1 Missense_Mutation p.M106V 0.11 tolerated_low_confidence(0.32) benign(0.029) TCGA-J2-8194-01 6 53385639 53385639 C T GCLC Missense_Mutation p.R128Q 0.12 deleterious(0) probably_damaging(1) TCGA-J2-8194-01 6 55406887 55406887 C A HMGCLL1 Missense_Mutation p.G84W 0.38 deleterious(0) probably_damaging(1) TCGA-J2-8194-01 6 91246099 91246099 C A MAP3K7 Missense_Mutation p.R438I 0.38 tolerated(0.09) possibly_damaging(0.84) TCGA-J2-8194-01 7 100732116 100732116 C T TRIM56 Missense_Mutation p.P508L 0.13 deleterious(0) probably_damaging(0.999) TCGA-J2-8194-01 7 116830964 116830964 G T ST7 Missense_Mutation p.V410L 0.25 tolerated(0.07) possibly_damaging(0.864) TCGA-J2-8194-01 7 120480153 120480153 A C TSPAN12 Missense_Mutation p.I26S 0.21 tolerated(0.15) benign(0.038) TCGA-J2-8194-01 7 142364634 142364634 A G TRBV24-1 Missense_Mutation p.Q90R 0.18 tolerated(0.16) benign(0.021) TCGA-J2-8194-01 7 19765134 19765134 C A TMEM196 Intron 0.36 TCGA-J2-8194-01 7 37253031 37253031 T C ELMO1 Missense_Mutation p.N288S 0.30 tolerated(0.63) benign(0.028) TCGA-J2-8194-01 7 42088289 42088289 G A GLI3 Silent p.S160S 0.17 TCGA-J2-8194-01 8 113518972 113518972 C A CSMD3 Missense_Mutation p.D1615Y 0.11 deleterious(0) probably_damaging(0.982) TCGA-J2-8194-01 8 125499537 125499537 C T RNF139 Silent p.I549I 0.45 TCGA-J2-8194-01 8 77690600 77690600 C A ZFHX4 Missense_Mutation p.Q1084K 0.12 benign(0.092) TCGA-J2-8194-01 8 92346661 92346661 G T SLC26A7 Missense_Mutation p.V261L 0.46 tolerated(0.27) benign(0.059) TCGA-J2-8194-01 9 117124077 117124077 G A AKNA Silent p.S677S 0.18 TCGA-J2-8194-01 9 125621313 125621313 T A RC3H2 Missense_Mutation p.N640Y 0.10 tolerated(0.13) benign(0.121) TCGA-J2-8194-01 9 136321324 136321324 C - ADAMTS13 Frame_Shift_Del p.N1235Tfs*26 0.27 TCGA-J2-8194-01 9 138703415 138703415 G A CAMSAP1 Missense_Mutation p.R1517C 0.13 deleterious(0) probably_damaging(0.999) TCGA-J2-8194-01 X 100509551 100509551 G C DRP2 Splice_Site p.X705_splice 0.13 TCGA-J2-8194-01 X 10107495 10107495 G T WWC3 Nonsense_Mutation p.E1043* 0.23 TCGA-J2-8194-01 X 104463878 104463878 G T TEX13A Missense_Mutation p.P333H 0.18 tolerated(0.42) probably_damaging(0.953) TCGA-J2-8194-01 X 104463955 104463955 A G TEX13A Silent p.P307P 0.05 TCGA-J2-8194-01 X 106201566 106201566 C T MORC4 Missense_Mutation p.R462K 0.32 tolerated(0.14) benign(0.052) TCGA-J2-8194-01 X 109696967 109696967 C G RGAG1 Missense_Mutation p.P1041R 0.27 deleterious(0) benign(0.376) TCGA-J2-8194-01 X 117106827 117106827 G A KLHL13 Intron 0.29 TCGA-J2-8194-01 X 12906750 12906750 T C TLR7 Silent p.Y1041Y 0.20 TCGA-J2-8194-01 X 142717092 142717092 A C SLITRK4 Silent p.P611P 0.29 TCGA-J2-8194-01 X 150906969 150906969 C A CNGA2 Missense_Mutation p.T5N 0.27 tolerated_low_confidence(0.18) benign(0.004) TCGA-J2-8194-01 X 15287910 15287910 C T ASB9 Silent p.L29L 0.24 TCGA-J2-8194-01 X 153055714 153055714 C T IDH3G Missense_Mutation p.V57M 0.08 deleterious(0) probably_damaging(1) TCGA-J2-8194-01 X 153524109 153524109 G C TKTL1 5'UTR 0.18 TCGA-J2-8194-01 X 19854298 19854298 C A SH3KBP1 Missense_Mutation p.W36L 0.23 deleterious(0) benign(0.003) TCGA-J2-8194-01 X 31089959 31089959 T A FTHL17 Missense_Mutation p.M38L 0.25 tolerated(0.12) benign(0.176) TCGA-J2-8194-01 X 31089960 31089960 A C FTHL17 Silent p.S37S 0.24 TCGA-J2-8194-01 X 31838119 31838119 C G DMD Missense_Mutation p.A2428P 0.30 benign(0.066) TCGA-J2-8194-01 X 50053712 50053712 C G CCNB3 Missense_Mutation p.P848R 0.16 tolerated(0.14) possibly_damaging(0.804) TCGA-J2-8194-01 X 54567807 54567807 G A GNL3L Silent p.E97E 0.29 TCGA-J2-8194-01 X 54956660 54956660 G A TRO Missense_Mutation p.C1168Y 0.29 tolerated(0.14) probably_damaging(0.963) TCGA-J2-8194-01 X 55514840 55514840 C A USP51 Missense_Mutation p.G178V 0.17 tolerated_low_confidence(0.13) benign(0.002) TCGA-J2-8194-01 X 63569931 63569931 G T MTMR8 Missense_Mutation p.P163H 0.30 deleterious(0.04) benign(0.202) TCGA-J2-8194-01 X 70352357 70352357 C T MED12 Missense_Mutation p.R1462C 0.27 possibly_damaging(0.872) TCGA-J2-8194-01 X 72783354 72783354 G A CHIC1 Silent p.E78E 0.17 TCGA-J2-8194-01 X 84258934 84258934 G A APOOL Splice_Site p.X5_splice 0.20 TCGA-J2-8194-01 X 99662703 99662703 A C PCDH19 Missense_Mutation p.V298G 0.07 deleterious(0) possibly_damaging(0.609) TCGA-J2-A4AD-01 10 103988756 103988756 T C ELOVL3 Missense_Mutation p.L187P 0.29 deleterious(0) probably_damaging(0.968) TCGA-J2-A4AD-01 10 108377956 108377956 G T SORCS1 Silent p.V957V 0.17 TCGA-J2-A4AD-01 10 108469084 108469084 G A SORCS1 Missense_Mutation p.T347I 0.17 deleterious(0) benign(0.251) TCGA-J2-A4AD-01 10 115391348 115391348 C T NRAP Missense_Mutation p.E588K 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-J2-A4AD-01 10 118084852 118084852 G A CCDC172 Silent p.K39K 0.13 TCGA-J2-A4AD-01 10 127548252 127548252 C G DHX32 Missense_Mutation p.E257Q 0.28 tolerated(0.38) benign(0.002) TCGA-J2-A4AD-01 10 127569375 127569375 C A DHX32 Nonsense_Mutation p.E7* 0.05 TCGA-J2-A4AD-01 10 15210655 15210655 G C NMT2 5'UTR 0.13 TCGA-J2-A4AD-01 10 29822269 29822269 G C SVIL Missense_Mutation p.Q343E 0.10 deleterious(0) benign(0.41) TCGA-J2-A4AD-01 10 31137626 31137626 C A ZNF438 Nonsense_Mutation p.E570* 0.34 TCGA-J2-A4AD-01 10 43088750 43088750 C - ZNF33B Frame_Shift_Del p.E550Rfs*47 0.16 TCGA-J2-A4AD-01 10 75276726 75276726 C G USP54 Missense_Mutation p.R1153T 0.23 tolerated_low_confidence(0.09) benign(0.064) TCGA-J2-A4AD-01 10 75277238 75277238 C T USP54 Silent p.E982E 0.20 TCGA-J2-A4AD-01 10 75286500 75286500 G A USP54 Missense_Mutation p.S700F 0.14 deleterious(0) possibly_damaging(0.613) TCGA-J2-A4AD-01 10 75391696 75391696 C A MYOZ1 Nonsense_Mutation p.E298* 0.26 TCGA-J2-A4AD-01 10 8007307 8007307 G C TAF3 Missense_Mutation p.E612Q 0.13 deleterious_low_confidence(0.02) probably_damaging(0.932) TCGA-J2-A4AD-01 10 98105661 98105661 T G OPALIN 3'UTR 0.35 TCGA-J2-A4AD-01 11 1027505 1027505 G T MUC6 Missense_Mutation p.T665K 0.30 unknown(0) TCGA-J2-A4AD-01 11 10500167 10500167 A G AMPD3 Missense_Mutation p.M115V 0.31 tolerated(0.29) benign(0) TCGA-J2-A4AD-01 11 111941308 111941308 G C PIH1D2 Missense_Mutation p.S222C 0.08 tolerated(0.08) benign(0.439) TCGA-J2-A4AD-01 11 116629059 116629059 G A BUD13 Silent p.L475L 0.24 TCGA-J2-A4AD-01 11 117100130 117100130 T C PCSK7 Missense_Mutation p.H144R 0.09 tolerated(0.1) benign(0.001) TCGA-J2-A4AD-01 11 117234158 117234158 C G CEP164 Nonsense_Mutation p.S234* 0.12 TCGA-J2-A4AD-01 11 118374583 118374583 G C KMT2A Missense_Mutation p.R2659P 0.30 probably_damaging(0.998) TCGA-J2-A4AD-01 11 123480519 123480519 A T GRAMD1B Silent p.P415P 0.17 TCGA-J2-A4AD-01 11 125888241 125888241 T G CDON Silent p.R208R 0.04 TCGA-J2-A4AD-01 11 133715385 133715385 T C SPATA19 5'UTR 0.06 TCGA-J2-A4AD-01 11 18339331 18339331 G C HPS5 Silent p.L25L 0.09 TCGA-J2-A4AD-01 11 18723358 18723358 A C TMEM86A Silent p.T175T 0.10 TCGA-J2-A4AD-01 11 34673102 34673102 G A EHF Missense_Mutation p.M162I 0.11 tolerated(0.56) benign(0.004) TCGA-J2-A4AD-01 11 4674623 4674623 C G OR51E1 Silent p.L289L 0.11 TCGA-J2-A4AD-01 11 47236630 47236630 C G DDB2 5'UTR 0.13 TCGA-J2-A4AD-01 11 48286094 48286094 T G OR4X1 Missense_Mutation p.L228V 0.09 tolerated(0.09) benign(0.103) TCGA-J2-A4AD-01 11 49178291 49178291 C A FOLH1 Missense_Mutation p.R534I 0.13 deleterious(0.04) probably_damaging(0.965) TCGA-J2-A4AD-01 11 55681511 55681511 G C OR5W2 Missense_Mutation p.P183R 0.25 deleterious(0) probably_damaging(0.99) TCGA-J2-A4AD-01 11 55889872 55889872 A T OR8H3 Silent p.T8T 0.18 TCGA-J2-A4AD-01 11 56019692 56019692 C A OR5T3 Missense_Mutation p.T6K 0.28 tolerated_low_confidence(0.22) benign(0.005) TCGA-J2-A4AD-01 11 56143722 56143722 T A OR8U1 Missense_Mutation p.I208N 0.07 deleterious(0) probably_damaging(0.969) TCGA-J2-A4AD-01 11 57367687 57367687 C G SERPING1 Silent p.L129L 0.26 TCGA-J2-A4AD-01 11 57996236 57996236 G A OR10Q1 Missense_Mutation p.L38F 0.21 deleterious(0.03) benign(0.157) TCGA-J2-A4AD-01 11 63313826 63313826 C T RARRES3 3'UTR 0.34 TCGA-J2-A4AD-01 11 65403712 65403712 G T PCNXL3 Missense_Mutation p.G1843C 0.45 deleterious(0) possibly_damaging(0.756) TCGA-J2-A4AD-01 11 66638533 66638533 T C PC Missense_Mutation p.H208R 0.18 tolerated(1) benign(0.001) TCGA-J2-A4AD-01 11 73748566 73748566 C G C2CD3 Missense_Mutation p.E1946D 0.11 tolerated(0.08) probably_damaging(0.979) TCGA-J2-A4AD-01 11 74555242 74555242 G C XRRA1 Missense_Mutation p.Q664E 0.11 deleterious(0) possibly_damaging(0.868) TCGA-J2-A4AD-01 11 76169287 76169287 G A C11orf30 Silent p.L102L 0.15 TCGA-J2-A4AD-01 11 82879653 82879653 C A PCF11 Nonsense_Mutation p.S759* 0.08 TCGA-J2-A4AD-01 11 92600140 92600140 G A FAT3 Silent p.A3964A 0.21 TCGA-J2-A4AD-01 11 94862742 94862742 A G ENDOD1 Silent p.%3D 0.24 TCGA-J2-A4AD-01 11 9875094 9875094 C G SBF2 Missense_Mutation p.M843I 0.18 deleterious(0) possibly_damaging(0.625) TCGA-J2-A4AD-01 12 11244547 11244547 G C TAS2R43 Missense_Mutation p.F94L 0.51 tolerated(0.06) benign(0.299) TCGA-J2-A4AD-01 12 118588791 118588791 A C TAOK3 3'UTR 0.17 TCGA-J2-A4AD-01 12 122285119 122285119 A T HPD Missense_Mutation p.Y200N 0.27 deleterious(0) probably_damaging(1) TCGA-J2-A4AD-01 12 123067261 123067261 G C KNTC1 Missense_Mutation p.E998Q 0.33 deleterious(0.01) benign(0.127) TCGA-J2-A4AD-01 12 123067393 123067393 G A KNTC1 Missense_Mutation p.E1042K 0.23 tolerated(1) benign(0.001) TCGA-J2-A4AD-01 12 126135286 126135286 C A TMEM132B Silent p.S562S 0.10 TCGA-J2-A4AD-01 12 12940525 12940525 A G APOLD1 Missense_Mutation p.K260R 0.15 tolerated_low_confidence(0.06) possibly_damaging(0.549) TCGA-J2-A4AD-01 12 130892270 130892270 C A RIMBP2 Splice_Site p.X975_splice 0.26 TCGA-J2-A4AD-01 12 130892271 130892271 C A RIMBP2 Missense_Mutation p.E975D 0.26 deleterious(0) possibly_damaging(0.842) TCGA-J2-A4AD-01 12 131561352 131561352 A G GPR133 Missense_Mutation p.K494E 0.09 tolerated(0.68) benign(0.005) TCGA-J2-A4AD-01 12 14947650 14947650 G C WBP11 Missense_Mutation p.S181C 0.09 deleterious(0.01) unknown(0) TCGA-J2-A4AD-01 12 22025600 22025600 G A ABCC9 Silent p.L719L 0.13 TCGA-J2-A4AD-01 12 22211632 22211632 C T CMAS Nonsense_Mutation p.Q231* 0.24 TCGA-J2-A4AD-01 12 22677460 22677460 G A C2CD5 Missense_Mutation p.R183C 0.13 deleterious(0) probably_damaging(0.957) TCGA-J2-A4AD-01 12 401983 401983 G C KDM5A Missense_Mutation p.S1603C 0.10 deleterious(0) probably_damaging(0.987) TCGA-J2-A4AD-01 12 42853979 42853979 C T PRICKLE1 Missense_Mutation p.E710K 0.18 tolerated(0.15) benign(0.002) TCGA-J2-A4AD-01 12 51072622 51072622 G A DIP2B Silent p.L359L 0.29 TCGA-J2-A4AD-01 12 51318914 51318914 A T METTL7A Silent p.I31I 0.05 TCGA-J2-A4AD-01 12 53242447 53242447 G T KRT78 Missense_Mutation p.Q90K 0.13 tolerated(0.25) benign(0.01) TCGA-J2-A4AD-01 12 56531655 56531655 G A ESYT1 Missense_Mutation p.E729K 0.06 deleterious(0) possibly_damaging(0.897) TCGA-J2-A4AD-01 12 65857119 65857119 G A MSRB3 3'UTR 0.24 TCGA-J2-A4AD-01 12 81110965 81110965 G A MYF5 Silent p.A41A 0.09 TCGA-J2-A4AD-01 12 85518101 85518101 G C LRRIQ1 Missense_Mutation p.V1271L 0.23 tolerated(0.65) benign(0.021) TCGA-J2-A4AD-01 12 88381726 88381726 G A C12orf50 Missense_Mutation p.H240Y 0.06 tolerated(0.1) possibly_damaging(0.72) TCGA-J2-A4AD-01 12 91502271 91502271 G - LUM Frame_Shift_Del p.F163Sfs*9 0.24 TCGA-J2-A4AD-01 12 95668600 95668600 G A VEZT Missense_Mutation p.E311K 0.08 tolerated(0.33) possibly_damaging(0.497) TCGA-J2-A4AD-01 12 98993431 98993431 C G SLC25A3 Intron 0.10 TCGA-J2-A4AD-01 13 24453417 24453417 G A MIPEP Missense_Mutation p.P177S 0.44 tolerated(0.22) benign(0.028) TCGA-J2-A4AD-01 13 35619537 35619537 C T NBEA Missense_Mutation p.A241V 0.75 deleterious(0) possibly_damaging(0.804) TCGA-J2-A4AD-01 13 77664249 77664249 C G MYCBP2 Missense_Mutation p.G3468A 0.15 probably_damaging(0.996) TCGA-J2-A4AD-01 14 102912215 102912216 - G TECPR2 Frame_Shift_Ins p.N1004Efs*17 0.20 TCGA-J2-A4AD-01 14 107083713 107083713 C A IGHV4-59 5'UTR 0.12 TCGA-J2-A4AD-01 14 19563438 19563438 G T POTEG Missense_Mutation p.A318S 0.24 tolerated(0.33) possibly_damaging(0.796) TCGA-J2-A4AD-01 14 19563616 19563616 A T POTEG Intron 0.18 TCGA-J2-A4AD-01 14 22539218 22539218 G C TRAV22 Missense_Mutation p.Q26H 0.09 deleterious(0.01) probably_damaging(0.955) TCGA-J2-A4AD-01 14 23346022 23346022 A G LRP10 Missense_Mutation p.N517D 0.25 deleterious(0.01) benign(0.169) TCGA-J2-A4AD-01 14 31855664 31855664 C - HEATR5A Frame_Shift_Del p.G143Afs*32 0.23 TCGA-J2-A4AD-01 14 36008712 36008712 T C RALGAPA1 3'UTR 0.41 TCGA-J2-A4AD-01 14 58033204 58033204 G T SLC35F4 Missense_Mutation p.P438H 0.33 deleterious(0) probably_damaging(0.999) TCGA-J2-A4AD-01 14 64656819 64656819 G C SYNE2 Missense_Mutation p.E5968Q 0.17 probably_damaging(0.999) TCGA-J2-A4AD-01 14 64882151 64882151 G C MTHFD1 Missense_Mutation p.E106Q 0.09 tolerated(0.32) benign(0.101) TCGA-J2-A4AD-01 14 68162372 68162372 G C RDH11 Missense_Mutation p.L17V 0.31 tolerated(0.17) benign(0.364) TCGA-J2-A4AD-01 14 77767499 77767499 G T POMT2 Silent p.I250I 0.31 TCGA-J2-A4AD-01 14 78390887 78390887 G C ADCK1 Missense_Mutation p.V316L 0.28 deleterious(0) probably_damaging(0.967) TCGA-J2-A4AD-01 14 92949061 92949080 GCCCCTCATCTTCCTCCTGT - SLC24A4 Frame_Shift_Del p.P432Rfs*91 0.17 TCGA-J2-A4AD-01 15 24924508 24924508 C A NPAP1 3'UTR 0.07 TCGA-J2-A4AD-01 15 33925194 33925194 C T RYR3 Missense_Mutation p.S971F 0.09 probably_damaging(0.99) TCGA-J2-A4AD-01 15 38988835 38988835 C A C15orf53 Missense_Mutation p.D9E 0.27 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-J2-A4AD-01 15 38988836 38988836 C A C15orf53 Missense_Mutation p.L10M 0.27 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-J2-A4AD-01 15 40293422 40293422 G A EIF2AK4 Silent p.L1052L 0.19 TCGA-J2-A4AD-01 15 40588986 40588986 C A PLCB2 Missense_Mutation p.G483C 0.30 tolerated(0.07) benign(0.005) TCGA-J2-A4AD-01 15 40916161 40916161 C T CASC5 Silent p.L1259L 0.10 TCGA-J2-A4AD-01 15 41276098 41276098 G A INO80 Missense_Mutation p.H1367Y 0.08 tolerated(0.66) benign(0.001) TCGA-J2-A4AD-01 15 43020192 43020192 T C CDAN1 Missense_Mutation p.T970A 0.31 tolerated(0.13) benign(0.217) TCGA-J2-A4AD-01 15 45564553 45564553 C A SLC28A2 Missense_Mutation p.T570K 0.10 deleterious(0) possibly_damaging(0.876) TCGA-J2-A4AD-01 15 50294357 50294357 G C ATP8B4 Missense_Mutation p.L167V 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-J2-A4AD-01 16 12136764 12136764 C G SNX29 Missense_Mutation p.F86L 0.08 tolerated(0.09) benign(0.074) TCGA-J2-A4AD-01 16 2160778 2160778 C T PKD1 Missense_Mutation p.E1464K 0.08 benign(0.081) TCGA-J2-A4AD-01 16 2813945 2813945 A C SRRM2 Missense_Mutation p.Q1139P 0.22 unknown(0) TCGA-J2-A4AD-01 16 28943360 28943360 C T CD19 Silent p.L13L 0.20 TCGA-J2-A4AD-01 16 30999312 30999312 G C HSD3B7 Missense_Mutation p.Q306H 0.31 tolerated(0.08) benign(0.099) TCGA-J2-A4AD-01 16 31926778 31926778 C G ZNF267 Missense_Mutation p.T403S 0.26 tolerated(0.11) benign(0.01) TCGA-J2-A4AD-01 16 3613822 3613822 G A NLRC3 Silent p.L419L 0.35 TCGA-J2-A4AD-01 16 3817811 3817811 C T CREBBP Missense_Mutation p.E1054K 0.19 unknown(0) TCGA-J2-A4AD-01 16 396838 396838 C A AXIN1 Missense_Mutation p.R63L 0.30 deleterious(0) probably_damaging(0.999) TCGA-J2-A4AD-01 16 55690762 55690762 C A SLC6A2 Missense_Mutation p.D52E 0.27 tolerated(1) benign(0.001) TCGA-J2-A4AD-01 16 57059866 57059866 G A NLRC5 Silent p.L337L 0.10 TCGA-J2-A4AD-01 16 67333384 67333384 C A KCTD19 Missense_Mutation p.A290S 0.19 deleterious(0) possibly_damaging(0.497) TCGA-J2-A4AD-01 16 72162582 72162582 G T PMFBP1 Missense_Mutation p.Q688K 0.25 tolerated(0.84) benign(0.006) TCGA-J2-A4AD-01 16 737292 737292 C G WDR24 Missense_Mutation p.E262Q 0.22 tolerated(1) benign(0.017) TCGA-J2-A4AD-01 16 86546692 86546692 G C FOXF1 3'UTR 0.17 TCGA-J2-A4AD-01 17 10356507 10356507 T C MYH4 Missense_Mutation p.T1025A 0.11 tolerated(0.08) benign(0.129) TCGA-J2-A4AD-01 17 16075263 16075263 A T NCOR1 Missense_Mutation p.S97T 0.09 possibly_damaging(0.791) TCGA-J2-A4AD-01 17 18158126 18158126 C T FLII Missense_Mutation p.E124K 0.11 deleterious(0.05) possibly_damaging(0.889) TCGA-J2-A4AD-01 17 19317898 19317898 G A RNF112 Splice_Site p.X312_splice 0.40 TCGA-J2-A4AD-01 17 21318743 21318743 G T KCNJ12 Missense_Mutation p.G30V 0.11 deleterious(0) probably_damaging(0.971) TCGA-J2-A4AD-01 17 27383322 27383322 G C PIPOX Nonstop_Mutation p.*391Sext*23 0.11 TCGA-J2-A4AD-01 17 30348805 30348805 A G LRRC37B Missense_Mutation p.K214E 0.08 deleterious(0.03) probably_damaging(0.937) TCGA-J2-A4AD-01 17 40934882 40934882 C G WNK4 Missense_Mutation p.S242W 0.15 deleterious(0) unknown(0) TCGA-J2-A4AD-01 17 41063288 41063288 C T G6PC Missense_Mutation p.H307Y 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-J2-A4AD-01 17 42083066 42083066 T A NAGS Missense_Mutation p.F163Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-J2-A4AD-01 17 42083067 42083067 C T NAGS Silent p.F163F 0.14 TCGA-J2-A4AD-01 17 43171164 43171164 G C NMT1 Missense_Mutation p.R166P 0.12 tolerated(1) benign(0) TCGA-J2-A4AD-01 17 4442280 4442280 G A SPNS2 3'UTR 0.12 TCGA-J2-A4AD-01 17 46654113 46654113 G T HOXB4 Silent p.R243R 0.31 TCGA-J2-A4AD-01 17 47788521 47788521 G C FAM117A 3'UTR 0.37 TCGA-J2-A4AD-01 17 57287917 57287917 C G SMG8 Missense_Mutation p.L169V 0.08 tolerated(0.22) benign(0.087) TCGA-J2-A4AD-01 17 57647885 57647885 C T DHX40 Missense_Mutation p.S96L 0.06 tolerated(0.07) benign(0.04) TCGA-J2-A4AD-01 17 66978702 66978702 C G ABCA9 Splice_Site p.X1574_splice 0.07 TCGA-J2-A4AD-01 17 67309290 67309290 C T ABCA5 Missense_Mutation p.V84M 0.23 deleterious(0.04) possibly_damaging(0.722) TCGA-J2-A4AD-01 17 74099601 74099601 C G EXOC7 Intron 0.27 TCGA-J2-A4AD-01 17 7577566 7577566 T C TP53 Missense_Mutation p.N239D 0.37 deleterious(0) probably_damaging(1) TCGA-J2-A4AD-01 17 7579518 7579518 C T TP53 Missense_Mutation p.D57N 0.12 tolerated(0.44) benign(0.002) TCGA-J2-A4AD-01 17 76989735 76989735 C T CANT1 Missense_Mutation p.G368D 0.09 deleterious(0) possibly_damaging(0.698) TCGA-J2-A4AD-01 17 8224416 8224416 T A ARHGEF15 3'UTR 0.32 TCGA-J2-A4AD-01 18 21740026 21740026 G A CABYR Missense_Mutation p.E378K 0.16 tolerated_low_confidence(0.31) possibly_damaging(0.486) TCGA-J2-A4AD-01 18 48510693 48510693 C G ELAC1 Missense_Mutation p.Q129E 0.13 tolerated(0.15) benign(0.101) TCGA-J2-A4AD-01 18 5291358 5291358 C - ZBTB14 Frame_Shift_Del p.K284Rfs*9 0.21 TCGA-J2-A4AD-01 18 61309036 61309036 G T SERPINB4 Silent p.I103I 0.20 TCGA-J2-A4AD-01 18 65178445 65178445 G A DSEL Missense_Mutation p.P1144L 0.38 deleterious(0) probably_damaging(0.999) TCGA-J2-A4AD-01 18 74637300 74637300 C T ZNF236 Nonsense_Mutation p.Q1271* 0.06 TCGA-J2-A4AD-01 19 1061873 1061873 G T ABCA7 Silent p.V1852V 0.40 TCGA-J2-A4AD-01 19 11145722 11145722 G A SMARCA4 Missense_Mutation p.E1362K 0.44 probably_damaging(0.995) TCGA-J2-A4AD-01 19 1556669 1556669 C G MEX3D Silent p.R283R 0.40 TCGA-J2-A4AD-01 19 16633941 16633941 G C CHERP Missense_Mutation p.I634M 0.41 tolerated(0.07) benign(0.008) TCGA-J2-A4AD-01 19 17036175 17036175 G A CPAMD8 Silent p.V1173V 0.37 TCGA-J2-A4AD-01 19 17927841 17927841 C T INSL3 Missense_Mutation p.D105N 0.45 tolerated_low_confidence(0.14) benign(0.021) TCGA-J2-A4AD-01 19 2102190 2102190 C T AP3D1 Silent p.A1210A 0.20 TCGA-J2-A4AD-01 19 22154277 22154277 G C ZNF208 Missense_Mutation p.H1187D 0.36 deleterious(0) probably_damaging(0.994) TCGA-J2-A4AD-01 19 3759787 3759787 G C APBA3 Missense_Mutation p.S159C 0.37 tolerated(0.08) benign(0.004) TCGA-J2-A4AD-01 19 39104543 39104543 G A MAP4K1 Silent p.L170L 0.22 TCGA-J2-A4AD-01 19 4292883 4292883 C T TMIGD2 Splice_Site p.X188_splice 0.51 TCGA-J2-A4AD-01 19 4523862 4523862 C G PLIN5 Missense_Mutation p.C357S 0.15 tolerated(1) benign(0.019) TCGA-J2-A4AD-01 19 47597252 47597252 C G ZC3H4 Missense_Mutation p.R156T 0.10 probably_damaging(0.957) TCGA-J2-A4AD-01 19 50399205 50399205 G T IL4I1 Missense_Mutation p.P62H 0.34 deleterious(0.03) benign(0.132) TCGA-J2-A4AD-01 19 53057934 53057934 C A ZNF808 Missense_Mutation p.H589N 0.21 deleterious(0) probably_damaging(0.987) TCGA-J2-A4AD-01 19 55605780 55605780 T C PPP1R12C Missense_Mutation p.D539G 0.39 deleterious(0) probably_damaging(0.993) TCGA-J2-A4AD-01 19 58928974 58928974 C - ZNF584 Frame_Shift_Del p.F363Lfs*87 0.26 TCGA-J2-A4AD-01 19 59060599 59060599 A G TRIM28 Missense_Mutation p.I552V 0.11 tolerated(0.32) benign(0) TCGA-J2-A4AD-01 19 9406031 9406031 C A ZNF699 3'UTR 0.14 TCGA-J2-A4AD-01 1 103379225 103379225 C G COL11A1 Missense_Mutation p.D1334H 0.08 unknown(0) TCGA-J2-A4AD-01 1 10435365 10435365 C T KIF1B Missense_Mutation p.A1735V 0.27 deleterious(0) probably_damaging(0.987) TCGA-J2-A4AD-01 1 11159855 11159855 G A EXOSC10 Silent p.L12L 0.12 TCGA-J2-A4AD-01 1 11298523 11298523 C G MTOR Missense_Mutation p.Q646H 0.05 tolerated(0.15) benign(0.187) TCGA-J2-A4AD-01 1 11303213 11303213 T C MTOR Missense_Mutation p.D457G 0.28 tolerated(0.39) benign(0.023) TCGA-J2-A4AD-01 1 116206605 116206605 A T VANGL1 Missense_Mutation p.R176S 0.30 deleterious(0.04) benign(0.403) TCGA-J2-A4AD-01 1 145293447 145293447 G C NBPF10 Missense_Mutation p.E14D 0.12 benign(0.405) TCGA-J2-A4AD-01 1 145473874 145473874 G T ANKRD34A Silent p.T182T 0.06 TCGA-J2-A4AD-01 1 150808792 150808792 G C ARNT Missense_Mutation p.R222G 0.11 deleterious(0) probably_damaging(0.996) TCGA-J2-A4AD-01 1 152128160 152128160 C A RPTN Missense_Mutation p.S472I 0.15 tolerated(0.09) benign(0.052) TCGA-J2-A4AD-01 1 155291198 155291198 C G RUSC1 Intron 0.61 TCGA-J2-A4AD-01 1 156618475 156618475 T G BCAN Missense_Mutation p.D295E 0.12 tolerated(0.07) possibly_damaging(0.527) TCGA-J2-A4AD-01 1 162352997 162352997 C T C1orf226 Missense_Mutation p.R158W 0.59 deleterious(0) probably_damaging(0.993) TCGA-J2-A4AD-01 1 16462184 16462184 C G EPHA2 Missense_Mutation p.R465P 0.26 tolerated(0.33) probably_damaging(0.956) TCGA-J2-A4AD-01 1 171293331 171293331 G C FMO4 Missense_Mutation p.D126H 0.05 deleterious(0.03) benign(0.06) TCGA-J2-A4AD-01 1 175937554 175937554 C G RFWD2 Intron 0.52 TCGA-J2-A4AD-01 1 178514997 178514997 C G C1ORF220 Missense_Mutation p.S128C 0.09 possibly_damaging(0.843) TCGA-J2-A4AD-01 1 181705510 181705510 G A CACNA1E Missense_Mutation p.R1121H 0.40 tolerated(0.08) possibly_damaging(0.522) TCGA-J2-A4AD-01 1 182026850 182026850 C A ZNF648 Missense_Mutation p.G99V 0.07 tolerated(0.11) benign(0.027) TCGA-J2-A4AD-01 1 182873351 182873351 A T SHCBP1L Silent p.A517A 0.49 TCGA-J2-A4AD-01 1 19481451 19481451 G T UBR4 Missense_Mutation p.T2140N 0.17 benign(0.001) TCGA-J2-A4AD-01 1 19610511 19610511 C A AKR7A3 Missense_Mutation p.M271I 0.14 tolerated(0.33) benign(0.01) TCGA-J2-A4AD-01 1 197030945 197030945 C T F13B Nonsense_Mutation p.W140* 0.10 TCGA-J2-A4AD-01 1 197030946 197030946 C G F13B Missense_Mutation p.W140S 0.10 deleterious(0) probably_damaging(1) TCGA-J2-A4AD-01 1 212964926 212964926 G C NSL1 Silent p.L60L 0.04 TCGA-J2-A4AD-01 1 22205117 22205117 G A HSPG2 Silent p.A837A 0.14 TCGA-J2-A4AD-01 1 224927060 224927060 G T CNIH3 3'UTR 0.13 TCGA-J2-A4AD-01 1 237802435 237802435 C A RYR2 Missense_Mutation p.A2350D 0.59 probably_damaging(0.96) TCGA-J2-A4AD-01 1 247695802 247695802 T A OR2C3 Silent p.I4I 0.07 TCGA-J2-A4AD-01 1 248458305 248458305 G C OR2T12 Silent p.V192V 0.05 TCGA-J2-A4AD-01 1 248569329 248569329 T G OR2T1 Missense_Mutation p.F12V 0.08 tolerated_low_confidence(0.05) benign(0.002) TCGA-J2-A4AD-01 1 26515821 26515821 C G CNKSR1 Missense_Mutation p.L642V 0.14 deleterious(0.04) probably_damaging(0.997) TCGA-J2-A4AD-01 1 26882043 26882043 G A RPS6KA1 Missense_Mutation p.M290I 0.33 tolerated(0.1) benign(0.088) TCGA-J2-A4AD-01 1 29602234 29602234 G T PTPRU Missense_Mutation p.E473D 0.15 tolerated(0.09) probably_damaging(0.968) TCGA-J2-A4AD-01 1 35580515 35580515 A C ZMYM1 Missense_Mutation p.R1028S 0.05 tolerated(0.08) probably_damaging(0.997) TCGA-J2-A4AD-01 1 36755327 36755327 C A THRAP3 Silent p.V569V 0.38 TCGA-J2-A4AD-01 1 47148989 47148989 C G EFCAB14 Missense_Mutation p.G432A 0.17 deleterious(0.04) possibly_damaging(0.843) TCGA-J2-A4AD-01 1 60312834 60312834 G A HOOK1 Silent p.L302L 0.20 TCGA-J2-A4AD-01 1 62959980 62959980 C A DOCK7 Missense_Mutation p.R1697L 0.18 tolerated(0.23) benign(0.01) TCGA-J2-A4AD-01 1 67559163 67559163 G T C1orf141 Missense_Mutation p.T243K 0.32 tolerated(0.27) possibly_damaging(0.895) TCGA-J2-A4AD-01 1 70687283 70687283 G C SRSF11 Intron 0.07 TCGA-J2-A4AD-01 1 7811314 7811314 G A CAMTA1 Missense_Mutation p.R1582Q 0.06 deleterious(0) probably_damaging(0.997) TCGA-J2-A4AD-01 1 78395188 78395188 T C NEXN Missense_Mutation p.M351T 0.28 deleterious(0.01) benign(0.097) TCGA-J2-A4AD-01 1 8384416 8384416 G T SLC45A1 Silent p.P9P 0.23 TCGA-J2-A4AD-01 1 85647996 85647996 G A SYDE2 Nonsense_Mutation p.Q777* 0.32 TCGA-J2-A4AD-01 20 25604606 25604606 C A NANP 5'UTR 0.26 TCGA-J2-A4AD-01 20 35580091 35580091 G C SAMHD1 5'UTR 0.10 TCGA-J2-A4AD-01 20 36718247 36718247 C G RPRD1B Silent p.P317P 0.10 TCGA-J2-A4AD-01 20 3675114 3675114 G A SIGLEC1 Silent p.L1004L 0.32 TCGA-J2-A4AD-01 20 40877324 40877324 C G PTPRT Intron 0.31 TCGA-J2-A4AD-01 20 41306758 41306758 C A PTPRT Missense_Mutation p.G301W 0.18 deleterious(0) probably_damaging(1) TCGA-J2-A4AD-01 20 41306759 41306759 C A PTPRT Silent p.V300V 0.17 TCGA-J2-A4AD-01 20 43851204 43851204 A C SEMG2 Missense_Mutation p.K311Q 0.30 tolerated(0.45) benign(0.084) TCGA-J2-A4AD-01 20 55028100 55028100 A G CASS4 Missense_Mutation p.Q623R 0.30 deleterious(0.01) possibly_damaging(0.77) TCGA-J2-A4AD-01 20 56140420 56140420 C A PCK1 Missense_Mutation p.H477N 0.21 tolerated(0.08) benign(0.38) TCGA-J2-A4AD-01 20 60509269 60509269 C T CDH4 Silent p.F845F 0.22 TCGA-J2-A4AD-01 20 62854695 62854695 C A MYT1 Silent p.A837A 0.26 TCGA-J2-A4AD-01 21 10996109 10996109 C A TPTE RNA 0.12 TCGA-J2-A4AD-01 21 19628934 19628934 G T CHODL Missense_Mutation p.S63I 0.35 tolerated(0.3) benign(0.004) TCGA-J2-A4AD-01 21 44479404 44479404 G A CBS Silent p.F385F 0.23 TCGA-J2-A4AD-01 22 16287899 16287899 C A POTEH 5'UTR 0.03 TCGA-J2-A4AD-01 22 23011181 23011181 G T IGLV3-27 Missense_Mutation p.G82C 0.20 deleterious(0) probably_damaging(0.999) TCGA-J2-A4AD-01 22 24125881 24125881 G C AP000349.1 Missense_Mutation p.H89D 0.14 unknown(0) TCGA-J2-A4AD-01 22 29120973 29120973 C T CHEK2 Missense_Mutation p.R238K 0.29 tolerated(0.95) benign(0.007) TCGA-J2-A4AD-01 22 42385625 42385625 C G SEPT3 Missense_Mutation p.I202M 0.12 deleterious(0.01) probably_damaging(0.967) TCGA-J2-A4AD-01 22 43996140 43996140 G A EFCAB6 Silent p.Y895Y 0.10 TCGA-J2-A4AD-01 2 109365543 109365543 G T RANBP2 Missense_Mutation p.V411L 0.24 deleterious(0.03) benign(0) TCGA-J2-A4AD-01 2 119750741 119750741 C T MARCO Nonsense_Mutation p.R432* 0.10 TCGA-J2-A4AD-01 2 121732616 121732616 C T GLI2 Silent p.V433V 0.12 TCGA-J2-A4AD-01 2 130952782 130952782 G C TUBA3E Missense_Mutation p.T82S 0.14 tolerated_low_confidence(0.06) benign(0.001) TCGA-J2-A4AD-01 2 132235914 132235914 C A TUBA3D Missense_Mutation p.H61N 0.36 deleterious_low_confidence(0) benign(0.347) TCGA-J2-A4AD-01 2 132238200 132238200 T C TUBA3D Missense_Mutation p.Y312H 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-J2-A4AD-01 2 138163244 138163244 A G THSD7B Silent p.T854T 0.28 TCGA-J2-A4AD-01 2 138400076 138400076 G T THSD7B Missense_Mutation p.R1276L 0.08 deleterious(0) unknown(0) TCGA-J2-A4AD-01 2 142012211 142012211 C T LRP1B Splice_Site p.X115_splice 0.22 TCGA-J2-A4AD-01 2 152553228 152553228 C G NEB Missense_Mutation p.D498H 0.09 probably_damaging(0.94) TCGA-J2-A4AD-01 2 160585672 160585672 G T MARCH7 Missense_Mutation p.D47Y 0.10 deleterious(0) possibly_damaging(0.896) TCGA-J2-A4AD-01 2 165984209 165984209 C G SCN3A Missense_Mutation p.E1109Q 0.22 deleterious(0.01) possibly_damaging(0.724) TCGA-J2-A4AD-01 2 166758261 166758261 C A TTC21B Missense_Mutation p.A910S 0.22 deleterious(0.02) probably_damaging(1) TCGA-J2-A4AD-01 2 170044616 170044616 C T LRP2 Silent p.L3064L 0.29 TCGA-J2-A4AD-01 2 178098936 178098944 ATACTTCTC - NFE2L2 In_Frame_Del p.R34_F37delinsL 0.24 TCGA-J2-A4AD-01 2 179170975 179170975 G T OSBPL6 Missense_Mutation p.A22S 0.24 tolerated_low_confidence(0.11) benign(0.168) TCGA-J2-A4AD-01 2 179472023 179472023 A C TTN Missense_Mutation p.L17769R 0.10 TCGA-J2-A4AD-01 2 179664293 179664293 G T TTN Silent p.R279R 0.24 TCGA-J2-A4AD-01 2 182346392 182346392 A T ITGA4 Missense_Mutation p.Q274H 0.28 deleterious(0) probably_damaging(0.999) TCGA-J2-A4AD-01 2 182468707 182468707 C A CERKL Missense_Mutation p.R113I 0.07 deleterious(0.01) benign(0.067) TCGA-J2-A4AD-01 2 183582879 183582879 G C DNAJC10 Silent p.L22L 0.06 TCGA-J2-A4AD-01 2 190428487 190428487 G A SLC40A1 Nonsense_Mutation p.R409* 0.07 TCGA-J2-A4AD-01 2 208865986 208865986 C T PLEKHM3 Silent p.R126R 0.08 TCGA-J2-A4AD-01 2 219252560 219252560 G C SLC11A1 Missense_Mutation p.R226P 0.35 deleterious(0.02) probably_damaging(0.939) TCGA-J2-A4AD-01 2 219886515 219886515 G T CCDC108 Missense_Mutation p.D1039E 0.22 tolerated(1) benign(0.003) TCGA-J2-A4AD-01 2 228882594 228882594 C G SPHKAP Silent p.V992V 0.22 TCGA-J2-A4AD-01 2 234638105 234638105 C T UGT1A3 Silent p.F111F 0.26 TCGA-J2-A4AD-01 2 241452252 241452252 T A ANKMY1 Silent p.A615A 0.29 TCGA-J2-A4AD-01 2 33812314 33812314 G C FAM98A Missense_Mutation p.A199G 0.28 tolerated(0.32) benign(0.039) TCGA-J2-A4AD-01 2 55546042 55546042 C G CCDC88A Missense_Mutation p.Q1086H 0.25 deleterious(0) probably_damaging(0.999) TCGA-J2-A4AD-01 2 62066702 62066702 A G FAM161A Silent p.D479D 0.26 TCGA-J2-A4AD-01 2 71653742 71653742 G A ZNF638 Silent p.K1581K 0.27 TCGA-J2-A4AD-01 2 71653747 71653747 A G ZNF638 Missense_Mutation p.K1583R 0.27 deleterious(0.04) benign(0.05) TCGA-J2-A4AD-01 2 96949018 96949018 C T SNRNP200 Silent p.T1612T 0.36 TCGA-J2-A4AD-01 2 98928442 98928442 T C VWA3B Missense_Mutation p.S1228P 0.31 deleterious_low_confidence(0.05) benign(0.003) TCGA-J2-A4AD-01 3 10491148 10491148 G T ATP2B2 Missense_Mutation p.T27K 0.23 deleterious(0.02) benign(0.046) TCGA-J2-A4AD-01 3 108541701 108541701 A G TRAT1 5'UTR 0.26 TCGA-J2-A4AD-01 3 112993415 112993415 C G BOC Missense_Mutation p.I476M 0.06 deleterious(0) possibly_damaging(0.691) TCGA-J2-A4AD-01 3 119885888 119885888 C G GPR156 Silent p.T812T 0.23 TCGA-J2-A4AD-01 3 120401096 120401096 G A HGD 5'UTR 0.43 TCGA-J2-A4AD-01 3 122287753 122287753 A C DTX3L Missense_Mutation p.N273H 0.25 deleterious(0.04) benign(0.19) TCGA-J2-A4AD-01 3 125271434 125271434 G T OSBPL11 Silent p.I415I 0.07 TCGA-J2-A4AD-01 3 127325523 127325523 C T MCM2 Missense_Mutation p.L322F 0.06 deleterious(0) probably_damaging(0.991) TCGA-J2-A4AD-01 3 127774424 127774424 G - SEC61A1 Frame_Shift_Del 0.21 TCGA-J2-A4AD-01 3 128292493 128292493 G T C3orf27 Missense_Mutation p.S27Y 0.24 possibly_damaging(0.781) TCGA-J2-A4AD-01 3 138376650 138376650 G C PIK3CB Missense_Mutation p.L942V 0.05 deleterious(0) probably_damaging(0.98) TCGA-J2-A4AD-01 3 138665206 138665209 CCGC - FOXL2 Frame_Shift_Del p.G119Afs*30 0.09 TCGA-J2-A4AD-01 3 15262455 15262455 A G CAPN7 Missense_Mutation p.Q202R 0.07 tolerated(0.52) benign(0.014) TCGA-J2-A4AD-01 3 15301118 15301118 G A SH3BP5 Intron 0.28 TCGA-J2-A4AD-01 3 167754759 167754759 T G GOLIM4 Missense_Mutation p.Q236H 0.31 deleterious(0) probably_damaging(0.986) TCGA-J2-A4AD-01 3 186501404 186501404 C T EIF4A2 Missense_Mutation p.S2F 0.31 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-J2-A4AD-01 3 186954337 186954337 C T MASP1 Missense_Mutation p.R441H 0.24 tolerated(0.44) benign(0.008) TCGA-J2-A4AD-01 3 187386820 187386820 G C SST 3'UTR 0.08 TCGA-J2-A4AD-01 3 189349229 189349229 C G TP63 5'UTR 0.25 TCGA-J2-A4AD-01 3 195960176 195960176 C A SLC51A 3'UTR 0.14 TCGA-J2-A4AD-01 3 44762394 44762394 G C ZNF502 Missense_Mutation p.E29Q 0.27 tolerated(0.15) benign(0.034) TCGA-J2-A4AD-01 3 44882588 44882588 T A KIF15 Missense_Mutation p.F1148Y 0.22 tolerated(0.07) benign(0.009) TCGA-J2-A4AD-01 3 45800469 45800469 C A SLC6A20 3'UTR 0.09 TCGA-J2-A4AD-01 3 47286910 47286910 C G KIF9 Splice_Site p.X460_splice 0.26 TCGA-J2-A4AD-01 3 52554261 52554261 C A STAB1 Silent p.T1818T 0.05 TCGA-J2-A4AD-01 3 53219629 53219629 C T PRKCD Missense_Mutation p.R300W 0.25 deleterious(0.04) possibly_damaging(0.556) TCGA-J2-A4AD-01 3 53223163 53223163 C - PRKCD Frame_Shift_Del p.H549Mfs*45 0.19 TCGA-J2-A4AD-01 3 62570863 62570863 G C CADPS Missense_Mutation p.S525C 0.10 tolerated(1) possibly_damaging(0.551) TCGA-J2-A4AD-01 3 64084988 64084988 C G PRICKLE2 Missense_Mutation p.Q758H 0.27 deleterious(0.02) benign(0.288) TCGA-J2-A4AD-01 4 114277491 114277491 G A ANK2 Missense_Mutation p.D2573N 0.06 probably_damaging(0.999) TCGA-J2-A4AD-01 4 123234828 123234828 G C KIAA1109 Missense_Mutation p.G3433A 0.14 probably_damaging(0.998) TCGA-J2-A4AD-01 4 123283358 123283358 C G KIAA1109 Missense_Mutation p.Q4992E 0.08 probably_damaging(0.935) TCGA-J2-A4AD-01 4 134073432 134073432 G A PCDH10 Missense_Mutation p.D713N 0.26 tolerated(0.61) benign(0.022) TCGA-J2-A4AD-01 4 13603287 13603287 C G BOD1L1 Missense_Mutation p.G1746A 0.29 benign(0.064) TCGA-J2-A4AD-01 4 139993119 139993119 C G ELF2 Missense_Mutation p.E131Q 0.22 deleterious(0.02) possibly_damaging(0.907) TCGA-J2-A4AD-01 4 16504392 16504392 G T LDB2 Missense_Mutation p.N332K 0.15 deleterious(0.01) possibly_damaging(0.777) TCGA-J2-A4AD-01 4 174449954 174449954 C G HAND2 Missense_Mutation p.E163Q 0.35 tolerated(0.08) benign(0.008) TCGA-J2-A4AD-01 4 25664326 25664326 G T SLC34A2 Splice_Site p.X38_splice 0.05 TCGA-J2-A4AD-01 4 25664327 25664327 C T SLC34A2 Missense_Mutation p.T38I 0.06 tolerated(0.26) benign(0.002) TCGA-J2-A4AD-01 4 44176969 44176969 G T KCTD8 Silent p.S420S 0.28 TCGA-J2-A4AD-01 4 47548749 47548749 G T ATP10D Missense_Mutation p.R502M 0.13 tolerated(0.08) benign(0.363) TCGA-J2-A4AD-01 4 5018897 5018897 C T CYTL1 Missense_Mutation p.V55M 0.13 deleterious(0.04) probably_damaging(0.994) TCGA-J2-A4AD-01 4 517578 517578 C T PIGG Missense_Mutation p.R649C 0.09 tolerated(0.19) benign(0.001) TCGA-J2-A4AD-01 4 6642857 6642857 G C MRFAP1 Missense_Mutation p.E90Q 0.32 tolerated(0.12) benign(0.021) TCGA-J2-A4AD-01 4 68919627 68919627 C G TMPRSS11F Nonstop_Mutation p.*439Yext*14 0.14 TCGA-J2-A4AD-01 4 7062754 7062754 C T GRPEL1 Silent p.L163L 0.05 TCGA-J2-A4AD-01 4 72622571 72622571 C G GC Missense_Mutation p.D317H 0.10 deleterious(0.04) benign(0.011) TCGA-J2-A4AD-01 4 72622615 72622615 A T GC Missense_Mutation p.V302E 0.08 tolerated(0.25) benign(0.012) TCGA-J2-A4AD-01 4 99214554 99214554 A T RAP1GDS1 Splice_Site p.X2_splice 0.19 TCGA-J2-A4AD-01 5 13759023 13759023 A G DNAH5 Silent p.L3451L 0.20 TCGA-J2-A4AD-01 5 13830724 13830724 G C DNAH5 Missense_Mutation p.L2015V 0.04 possibly_damaging(0.694) TCGA-J2-A4AD-01 5 140228264 140228264 C T PCDHA9 Missense_Mutation p.R62C 0.38 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-J2-A4AD-01 5 140553181 140553181 C A PCDHB7 Missense_Mutation p.S255R 0.22 deleterious_low_confidence(0.02) benign(0.056) TCGA-J2-A4AD-01 5 140553182 140553182 C G PCDHB7 Missense_Mutation p.P256A 0.22 deleterious_low_confidence(0.01) benign(0.038) TCGA-J2-A4AD-01 5 140683487 140683487 G C SLC25A2 5'UTR 0.43 TCGA-J2-A4AD-01 5 160034073 160034073 G C ATP10B Silent p.L953L 0.07 TCGA-J2-A4AD-01 5 16676259 16676259 T C MYO10 Missense_Mutation p.N1516S 0.21 tolerated(0.24) probably_damaging(0.97) TCGA-J2-A4AD-01 5 169812349 169812349 C A KCNMB1 Missense_Mutation p.V35F 0.39 deleterious(0) possibly_damaging(0.567) TCGA-J2-A4AD-01 5 169812350 169812350 C A KCNMB1 Silent p.L34L 0.37 TCGA-J2-A4AD-01 5 32074454 32074454 C G PDZD2 Nonsense_Mutation p.S1081* 0.16 TCGA-J2-A4AD-01 5 37048775 37048775 A G NIPBL Missense_Mutation p.D2254G 0.37 deleterious(0) benign(0.018) TCGA-J2-A4AD-01 5 41917195 41917195 G C C5orf51 Missense_Mutation p.D227H 0.09 tolerated(0.14) benign(0.003) TCGA-J2-A4AD-01 5 45262728 45262728 C G HCN1 Silent p.P656P 0.04 TCGA-J2-A4AD-01 5 484797 484797 A T SLC9A3 Missense_Mutation p.V257E 0.49 deleterious(0) probably_damaging(1) TCGA-J2-A4AD-01 5 50685659 50685659 C T ISL1 Missense_Mutation p.L220F 0.35 deleterious(0) probably_damaging(0.989) TCGA-J2-A4AD-01 5 64483995 64483995 G A ADAMTS6 Missense_Mutation p.R920C 0.11 deleterious(0) probably_damaging(0.987) TCGA-J2-A4AD-01 6 108076835 108076835 G T SCML4 Intron 0.24 TCGA-J2-A4AD-01 6 10902980 10902980 T C SYCP2L Silent p.H179H 0.29 TCGA-J2-A4AD-01 6 112462591 112462591 G T LAMA4 Missense_Mutation p.P928T 0.25 deleterious(0) probably_damaging(1) TCGA-J2-A4AD-01 6 116574353 116574353 T C TSPYL4 Silent p.E273E 0.12 TCGA-J2-A4AD-01 6 116579790 116579790 G T TSPYL4 5'Flank 0.07 TCGA-J2-A4AD-01 6 129826416 129826416 C A LAMA2 Silent p.P2873P 0.26 TCGA-J2-A4AD-01 6 132022279 132022279 G T OR2A4 Missense_Mutation p.A88D 0.15 tolerated(0.27) benign(0.004) TCGA-J2-A4AD-01 6 149911935 149911935 G C GINM1 Missense_Mutation p.E318D 0.16 tolerated(0.19) benign(0.423) TCGA-J2-A4AD-01 6 154412219 154412219 T C OPRM1 Missense_Mutation p.L352S 0.30 deleterious(0.05) probably_damaging(0.99) TCGA-J2-A4AD-01 6 154412220 154412220 G T OPRM1 Missense_Mutation p.L352F 0.31 tolerated(0.12) probably_damaging(0.997) TCGA-J2-A4AD-01 6 26032136 26032136 C G HIST1H3B Missense_Mutation p.E51D 0.04 deleterious_low_confidence(0.03) possibly_damaging(0.858) TCGA-J2-A4AD-01 6 31498604 31498604 C G DDX39B Missense_Mutation p.E408Q 0.10 deleterious(0.02) benign(0.016) TCGA-J2-A4AD-01 6 31503116 31503116 G C DDX39B Intron 0.08 TCGA-J2-A4AD-01 6 31612330 31612330 C T BAG6 Silent p.L479L 0.10 TCGA-J2-A4AD-01 6 31855418 31855418 G T EHMT2 Missense_Mutation p.F649L 0.28 tolerated(0.06) benign(0.075) TCGA-J2-A4AD-01 6 31855628 31855628 G A EHMT2 Missense_Mutation p.S619L 0.29 tolerated(0.09) benign(0.126) TCGA-J2-A4AD-01 6 31855825 31855825 G T EHMT2 Missense_Mutation p.Q580K 0.18 tolerated(0.55) benign(0.344) TCGA-J2-A4AD-01 6 31856762 31856762 G C EHMT2 Silent p.L400L 0.38 TCGA-J2-A4AD-01 6 36169089 36169089 G C BRPF3 Missense_Mutation p.Q330H 0.21 deleterious(0) probably_damaging(0.999) TCGA-J2-A4AD-01 6 40399695 40399695 G T LRFN2 Silent p.T386T 0.40 TCGA-J2-A4AD-01 6 44115224 44115224 G T TMEM63B Missense_Mutation p.R325L 0.27 tolerated(0.38) benign(0.061) TCGA-J2-A4AD-01 6 66112477 66112477 G T EYS Missense_Mutation p.P360T 0.24 tolerated(0.21) benign(0.003) TCGA-J2-A4AD-01 7 106843977 106843977 A G COG5 Missense_Mutation p.M856T 0.51 tolerated(0.62) benign(0.005) TCGA-J2-A4AD-01 7 114282484 114282484 G C FOXP2 Missense_Mutation p.E290D 0.12 tolerated(0.75) unknown(0) TCGA-J2-A4AD-01 7 135047834 135047834 C T CNOT4 Missense_Mutation p.A649T 0.35 deleterious_low_confidence(0.02) benign(0.004) TCGA-J2-A4AD-01 7 143049057 143049057 G C CLCN1 Nonstop_Mutation p.*989Sext*8 0.18 TCGA-J2-A4AD-01 7 149491977 149491977 C A SSPO RNA 0.59 TCGA-J2-A4AD-01 7 151945048 151945048 C A KMT2C Missense_Mutation p.G824V 0.16 probably_damaging(1) TCGA-J2-A4AD-01 7 151945483 151945483 C T KMT2C Missense_Mutation p.R679K 0.36 benign(0.001) TCGA-J2-A4AD-01 7 33427654 33427654 A C BBS9 Silent p.V671V 0.18 TCGA-J2-A4AD-01 7 34884569 34884569 C G NPSR1 Missense_Mutation p.I273M 0.09 deleterious(0) probably_damaging(0.916) TCGA-J2-A4AD-01 7 43546842 43546842 T C HECW1 Silent p.G1246G 0.12 TCGA-J2-A4AD-01 7 45142079 45142079 C T TBRG4 Silent p.K396K 0.18 TCGA-J2-A4AD-01 7 47872694 47872694 T A PKD1L1 Missense_Mutation p.T2111S 0.38 tolerated(1) benign(0) TCGA-J2-A4AD-01 7 5112640 5112640 C T RBAK-RBAKDN 3'UTR 0.16 TCGA-J2-A4AD-01 7 75511148 75511148 T G RHBDD2 Silent p.V60V 0.24 TCGA-J2-A4AD-01 7 77789517 77789517 G T MAGI2 Nonsense_Mutation p.Y890* 0.30 TCGA-J2-A4AD-01 7 96651595 96651595 G A DLX5 Nonsense_Mutation p.Q148* 0.20 TCGA-J2-A4AD-01 7 99621376 99621376 C T ZKSCAN1 Nonsense_Mutation p.Q83* 0.12 TCGA-J2-A4AD-01 8 100729495 100729495 G T VPS13B Missense_Mutation p.C2209F 0.06 deleterious(0) benign(0.088) TCGA-J2-A4AD-01 8 107752683 107752683 A G OXR1 Missense_Mutation p.D760G 0.19 deleterious(0) probably_damaging(0.975) TCGA-J2-A4AD-01 8 108913111 108913111 C T RSPO2 3'UTR 0.33 TCGA-J2-A4AD-01 8 11415514 11415514 G T BLK Missense_Mutation p.L332F 0.09 deleterious(0.01) possibly_damaging(0.842) TCGA-J2-A4AD-01 8 114449071 114449071 G A CSMD3 Missense_Mutation p.R5C 0.04 tolerated_low_confidence(0.2) benign(0) TCGA-J2-A4AD-01 8 141557617 141557617 C G AGO2 Missense_Mutation p.K566N 0.08 deleterious(0) probably_damaging(0.977) TCGA-J2-A4AD-01 8 144945687 144945687 C T EPPK1 Missense_Mutation p.D579N 0.30 benign(0.008) TCGA-J2-A4AD-01 8 22108115 22108115 G C POLR3D 3'UTR 0.16 TCGA-J2-A4AD-01 8 30700256 30700256 C G TEX15 Missense_Mutation p.W2093S 0.15 deleterious(0) probably_damaging(0.999) TCGA-J2-A4AD-01 8 53569599 53569600 - T RB1CC1 Frame_Shift_Ins p.D931Gfs*17 0.09 TCGA-J2-A4AD-01 8 70585343 70585343 G T SLCO5A1 Silent p.R770R 0.25 TCGA-J2-A4AD-01 8 88885613 88885613 G A DCAF4L2 Missense_Mutation p.A196V 0.28 tolerated(0.46) benign(0.091) TCGA-J2-A4AD-01 8 90777658 90777658 T C RIPK2 Silent p.T139T 0.37 TCGA-J2-A4AD-01 8 91057173 91057173 A G DECR1 Missense_Mutation p.N279D 0.38 deleterious(0.01) probably_damaging(0.981) TCGA-J2-A4AD-01 8 97244136 97244136 C A UQCRB Nonsense_Mutation p.E42* 0.11 TCGA-J2-A4AD-01 8 98900408 98900408 C T MATN2 Missense_Mutation p.S27L 0.43 tolerated(0.37) benign(0) TCGA-J2-A4AD-01 9 112969802 112969802 G A C9orf152 Missense_Mutation p.H20Y 0.07 tolerated(1) benign(0) TCGA-J2-A4AD-01 9 119097321 119097321 G A PAPPA Silent p.Q1193Q 0.39 TCGA-J2-A4AD-01 9 21409616 21409616 C G IFNA8 Missense_Mutation p.F147L 0.08 deleterious(0) probably_damaging(1) TCGA-J2-A4AD-01 9 21409697 21409697 C T IFNA8 Silent p.S174S 0.36 TCGA-J2-A4AD-01 9 33248468 33248468 G A SPINK4 Silent p.%3D 0.43 TCGA-J2-A4AD-01 9 396816 396816 T C DOCK8 Missense_Mutation p.M1001T 0.46 tolerated(1) benign(0.001) TCGA-J2-A4AD-01 9 406981 406981 G T DOCK8 Missense_Mutation p.D1148Y 0.08 deleterious(0) probably_damaging(0.983) TCGA-J2-A4AD-01 9 8484238 8484238 C A PTPRD Missense_Mutation p.R1098S 0.38 tolerated(0.47) probably_damaging(0.979) TCGA-J2-A4AD-01 X 100117726 100117726 G A NOX1 Missense_Mutation p.L141F 0.15 deleterious(0) probably_damaging(1) TCGA-J2-A4AD-01 X 100912526 100912526 C G ARMCX2 Missense_Mutation p.G17R 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-J2-A4AD-01 X 107084259 107084259 C A MID2 Silent p.R122R 0.11 TCGA-J2-A4AD-01 X 117676688 117676688 G C DOCK11 Missense_Mutation p.E35Q 0.06 tolerated(0.19) benign(0.013) TCGA-J2-A4AD-01 X 123197899 123197899 G C STAG2 Missense_Mutation p.E675Q 0.20 tolerated(0.07) benign(0.281) TCGA-J2-A4AD-01 X 127185866 127185866 A C ACTRT1 Missense_Mutation p.L107R 0.04 deleterious(0) probably_damaging(0.973) TCGA-J2-A4AD-01 X 129189975 129189975 C A BCORL1 Missense_Mutation p.T1667N 0.06 benign(0.194) TCGA-J2-A4AD-01 X 12939590 12939590 G C TLR8 Missense_Mutation p.G811R 0.04 tolerated(0.06) possibly_damaging(0.5) TCGA-J2-A4AD-01 X 12939943 12939943 C A TLR8 Silent p.I928I 0.29 TCGA-J2-A4AD-01 X 130410953 130410953 G C IGSF1 Missense_Mutation p.I861M 0.11 tolerated(0.25) possibly_damaging(0.521) TCGA-J2-A4AD-01 X 135863013 135863013 C G ARHGEF6 Missense_Mutation p.W10S 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-J2-A4AD-01 X 140995101 140995101 A G MAGEC1 Silent p.P637P 0.16 TCGA-J2-A4AD-01 X 147743929 147743929 A C AFF2 Missense_Mutation p.E227D 0.12 tolerated(0.75) benign(0.147) TCGA-J2-A4AD-01 X 148627093 148627093 C A CXorf40A Intron 0.19 TCGA-J2-A4AD-01 X 151997126 151997126 G A CETN2 Silent p.R128R 0.25 TCGA-J2-A4AD-01 X 154158072 154158072 C G F8 Missense_Mutation p.K1331N 0.09 deleterious(0.01) probably_damaging(0.954) TCGA-J2-A4AD-01 X 154159815 154159815 C T F8 Silent p.L750L 0.07 TCGA-J2-A4AD-01 X 154176162 154176162 C A F8 Missense_Mutation p.D642Y 0.10 deleterious(0) probably_damaging(0.91) TCGA-J2-A4AD-01 X 19983618 19983618 G T CXorf23 Nonsense_Mutation p.S273* 0.27 TCGA-J2-A4AD-01 X 23722069 23722069 T C ACOT9 Missense_Mutation p.H430R 0.20 deleterious(0.05) possibly_damaging(0.873) TCGA-J2-A4AD-01 X 31893485 31893485 G T DMD Silent p.S2306S 0.31 TCGA-J2-A4AD-01 X 3238940 3238940 C G MXRA5 Missense_Mutation p.D1596H 0.06 tolerated(0.16) benign(0.007) TCGA-J2-A4AD-01 X 3240148 3240148 G T MXRA5 Nonsense_Mutation p.S1193* 0.10 TCGA-J2-A4AD-01 X 3240149 3240149 A G MXRA5 Missense_Mutation p.S1193P 0.10 tolerated(1) benign(0) TCGA-J2-A4AD-01 X 34961849 34961849 G T FAM47B Nonsense_Mutation p.E301* 0.24 TCGA-J2-A4AD-01 X 48681203 48681203 G T HDAC6 Missense_Mutation p.M837I 0.16 tolerated(0.55) benign(0.027) TCGA-J2-A4AD-01 X 49237387 49237387 T A GAGE2B Missense_Mutation p.F31Y 0.04 benign(0.027) TCGA-J2-A4AD-01 X 57620098 57620098 G A ZXDB Silent p.L539L 0.23 TCGA-J2-A4AD-01 X 63412428 63412428 G C AMER1 Missense_Mutation p.P247A 0.15 tolerated(0.78) benign(0.048) TCGA-J2-A4AE-01 10 116056777 116056777 A G AFAP1L2 Missense_Mutation p.V797A 0.14 tolerated(0.25) possibly_damaging(0.493) TCGA-J2-A4AE-01 10 124380708 124380708 G A DMBT1 Missense_Mutation p.C1678Y 0.08 deleterious(0) probably_damaging(1) TCGA-J2-A4AE-01 10 126395236 126395236 G T FAM53B Missense_Mutation p.S16Y 0.07 tolerated(0.58) benign(0.096) TCGA-J2-A4AE-01 11 102650054 102650054 A G MMP10 Missense_Mutation p.V129A 0.06 deleterious(0) probably_damaging(0.981) TCGA-J2-A4AE-01 11 15134073 15134073 C G INSC Missense_Mutation p.L20V 0.32 tolerated_low_confidence(0.09) benign(0.002) TCGA-J2-A4AE-01 11 55322397 55322397 C G OR4C15 Silent p.G205G 0.05 TCGA-J2-A4AE-01 11 58126185 58126185 G A OR5B17 Missense_Mutation p.R120C 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.576) TCGA-J2-A4AE-01 12 1023154 1023154 C G RAD52 Missense_Mutation p.Q367H 0.29 tolerated(0.08) benign(0.002) TCGA-J2-A4AE-01 12 56510408 56510408 T G RPL41 5'UTR 0.19 TCGA-J2-A4AE-01 12 7044793 7044793 T C ATN1 Silent p.P121P 0.09 TCGA-J2-A4AE-01 12 78522539 78522539 G A NAV3 Missense_Mutation p.R1445H 0.10 tolerated(0.27) probably_damaging(0.999) TCGA-J2-A4AE-01 13 37619511 37619511 C G SUPT20H Splice_Site p.X56_splice 0.12 TCGA-J2-A4AE-01 13 48919276 48919277 TA - RB1 Frame_Shift_Del p.M148Vfs*8 0.18 TCGA-J2-A4AE-01 13 58208729 58208729 G A PCDH17 Silent p.S683S 0.11 TCGA-J2-A4AE-01 14 100374015 100374015 A G EML1 Missense_Mutation p.D369G 0.23 deleterious(0) probably_damaging(0.923) TCGA-J2-A4AE-01 14 103410340 103410340 G A CDC42BPB Silent p.L1432L 0.13 TCGA-J2-A4AE-01 14 22564882 22564882 T A TRDV1 Nonsense_Mutation p.C111* 0.08 TCGA-J2-A4AE-01 14 45433179 45433179 C G FAM179B Missense_Mutation p.L519V 0.27 deleterious(0) probably_damaging(0.999) TCGA-J2-A4AE-01 16 17353100 17353100 C T XYLT1 Missense_Mutation p.G220R 0.19 tolerated_low_confidence(0.33) benign(0.003) TCGA-J2-A4AE-01 16 66975426 66975426 C T CES2 Silent p.P375P 0.27 TCGA-J2-A4AE-01 16 89776218 89776218 G C VPS9D1 Missense_Mutation p.S452C 0.07 tolerated(0.06) benign(0.004) TCGA-J2-A4AE-01 17 45452190 45452190 G A EFCAB13 Silent p.L410L 0.10 TCGA-J2-A4AE-01 17 46685369 46685369 C T HOXB7 Silent p.T163T 0.24 TCGA-J2-A4AE-01 17 47299967 47299967 G A ABI3 Missense_Mutation p.E331K 0.12 tolerated(0.07) possibly_damaging(0.621) TCGA-J2-A4AE-01 17 62049506 62049506 T G SCN4A Missense_Mutation p.K158Q 0.25 deleterious(0.01) possibly_damaging(0.56) TCGA-J2-A4AE-01 18 44030317 44030317 G A RNF165 Missense_Mutation p.G225E 0.09 deleterious(0) possibly_damaging(0.743) TCGA-J2-A4AE-01 18 72109265 72109265 G A FAM69C Silent p.C321C 0.11 TCGA-J2-A4AE-01 19 17476574 17476574 C G PLVAP Missense_Mutation p.E234Q 0.08 tolerated(0.24) benign(0.11) TCGA-J2-A4AE-01 19 22157246 22157246 C G ZNF208 Missense_Mutation p.R197T 0.12 tolerated(0.28) benign(0.066) TCGA-J2-A4AE-01 19 42858801 42858801 C T MEGF8 Missense_Mutation p.S1291L 0.10 tolerated(0.13) probably_damaging(0.973) TCGA-J2-A4AE-01 19 55107798 55107798 G A LILRA1 Missense_Mutation p.R368H 0.15 tolerated(0.37) benign(0.039) TCGA-J2-A4AE-01 19 57286804 57286804 G A ZIM2 Missense_Mutation p.P279L 0.32 tolerated(0.87) benign(0.038) TCGA-J2-A4AE-01 1 155870346 155870346 C A RIT1 Missense_Mutation p.A182S 0.05 deleterious(0.03) probably_damaging(0.988) TCGA-J2-A4AE-01 1 170501349 170501349 C T GORAB Silent p.C20C 0.08 TCGA-J2-A4AE-01 1 185984321 185984321 C A HMCN1 Missense_Mutation p.T1554N 0.17 probably_damaging(0.998) TCGA-J2-A4AE-01 1 220192378 220192378 C T EPRS Missense_Mutation p.G465R 0.22 deleterious(0) probably_damaging(0.988) TCGA-J2-A4AE-01 1 22054976 22054976 T C USP48 Intron 0.25 TCGA-J2-A4AE-01 20 57474035 57474035 C T GNAS Silent p.S727S 0.16 TCGA-J2-A4AE-01 20 60911825 60911825 C A LAMA5 Missense_Mutation p.A728S 0.20 probably_damaging(0.928) TCGA-J2-A4AE-01 20 9496270 9496270 G A LAMP5 Missense_Mutation p.D79N 0.21 deleterious(0) probably_damaging(1) TCGA-J2-A4AE-01 21 15561403 15561403 G A LIPI Silent p.N149N 0.26 TCGA-J2-A4AE-01 2 179498611 179498611 C T TTN Silent p.L14205L 0.07 TCGA-J2-A4AE-01 2 238247748 238247748 A T COL6A3 Missense_Mutation p.F2826Y 0.17 unknown(0) TCGA-J2-A4AE-01 3 184090419 184090419 G A THPO Missense_Mutation p.T315I 0.11 tolerated_low_confidence(0.05) benign(0.01) TCGA-J2-A4AE-01 4 103553233 103553233 G T MANBA Missense_Mutation p.S874Y 0.08 deleterious(0) probably_damaging(0.992) TCGA-J2-A4AE-01 4 155489647 155489647 G T FGB Splice_Site p.X278_splice 0.09 TCGA-J2-A4AE-01 4 48584693 48584693 G A FRYL Silent p.L603L 0.25 TCGA-J2-A4AE-01 5 121488446 121488446 T C ZNF474 Missense_Mutation p.L254P 0.17 deleterious(0) probably_damaging(0.999) TCGA-J2-A4AE-01 5 140176960 140176960 C A PCDHA2 Intron 0.17 TCGA-J2-A4AE-01 5 16067569 16067569 T C MARCH11 3'UTR 0.09 TCGA-J2-A4AE-01 5 37364387 37364387 C T NUP155 Missense_Mutation p.R86K 0.14 tolerated(0.19) benign(0.326) TCGA-J2-A4AE-01 6 151277195 151277195 C T MTHFD1L Silent p.G597G 0.09 TCGA-J2-A4AE-01 6 29141532 29141532 G A OR2J2 Silent p.L40L 0.09 TCGA-J2-A4AE-01 7 116412043 116412043 G - MET Frame_Shift_Del 0.23 TCGA-J2-A4AE-01 9 114886607 114886607 G A SUSD1 Silent p.S272S 0.31 TCGA-J2-A4AE-01 9 131038503 131038503 G C SWI5 Missense_Mutation p.E27Q 0.11 tolerated_low_confidence(0.38) benign(0.031) TCGA-J2-A4AE-01 9 134366766 134366766 C T PRRC2B Intron 0.17 TCGA-J2-A4AE-01 9 16419598 16419598 C A BNC2 Missense_Mutation p.D897Y 0.22 tolerated(0.27) probably_damaging(0.999) TCGA-J2-A4AE-01 9 21206993 21206993 C G IFNA10 Missense_Mutation p.R35T 0.18 tolerated(0.11) possibly_damaging(0.46) TCGA-J2-A4AE-01 9 21304862 21304862 T C IFNA5 Missense_Mutation p.T132A 0.26 tolerated(0.31) benign(0.031) TCGA-J2-A4AE-01 9 5457194 5457194 T C CD274 Silent p.Y56Y 0.24 TCGA-J2-A4AE-01 X 100912444 100912444 C T ARMCX2 Missense_Mutation p.R44Q 0.24 deleterious_low_confidence(0.04) benign(0.016) TCGA-J2-A4AE-01 X 22095662 22095662 G T PHEX Missense_Mutation p.V169L 0.04 deleterious(0.01) possibly_damaging(0.816) TCGA-J2-A4AE-01 X 7811697 7811697 C T VCX Silent p.H87H 0.39 TCGA-J2-A4AG-01 10 43316379 43316379 A T BMS1 Intron 0.24 TCGA-J2-A4AG-01 10 99161040 99161040 G A RRP12 5'UTR 0.10 TCGA-J2-A4AG-01 11 102991263 102991263 G T DYNC2H1 Nonsense_Mutation p.E363* 0.14 TCGA-J2-A4AG-01 11 49204780 49204780 G A FOLH1 Missense_Mutation p.R281C 0.15 tolerated(0.07) benign(0.179) TCGA-J2-A4AG-01 11 55418445 55418445 G T OR4S2 Missense_Mutation p.E22D 0.06 deleterious(0) benign(0.169) TCGA-J2-A4AG-01 11 55418468 55418468 C - OR4S2 Frame_Shift_Del p.S30Ffs*5 0.08 TCGA-J2-A4AG-01 11 55595409 55595409 T A OR5L2 Missense_Mutation p.S239T 0.14 deleterious(0) probably_damaging(0.998) TCGA-J2-A4AG-01 11 605711 605711 G T PHRF1 Missense_Mutation p.V480L 0.13 tolerated(0.09) benign(0.059) TCGA-J2-A4AG-01 11 61504754 61504754 C A DAGLA Missense_Mutation p.T491N 0.12 tolerated(0.36) benign(0.022) TCGA-J2-A4AG-01 11 61549225 61549225 G A MYRF Missense_Mutation p.G982D 0.21 tolerated(0.13) benign(0.185) TCGA-J2-A4AG-01 11 65063373 65063373 T C POLA2 Missense_Mutation p.I520T 0.07 deleterious(0) possibly_damaging(0.71) TCGA-J2-A4AG-01 12 10541443 10541443 G T KLRK1 5'UTR 0.11 TCGA-J2-A4AG-01 12 108985527 108985527 G T TMEM119 Silent p.G211G 0.18 TCGA-J2-A4AG-01 12 114793760 114793760 G T TBX5 Nonsense_Mutation p.C378* 0.12 TCGA-J2-A4AG-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.18 deleterious(0) benign(0.361) TCGA-J2-A4AG-01 12 31132592 31132592 G A TSPAN11 Missense_Mutation p.R148Q 0.08 tolerated(0.35) benign(0.059) TCGA-J2-A4AG-01 12 6939934 6939934 G A LEPREL2 Missense_Mutation p.V328M 0.12 tolerated(0.07) possibly_damaging(0.889) TCGA-J2-A4AG-01 12 70195461 70195461 C T RAB3IP Missense_Mutation p.R380W 0.16 deleterious(0.01) possibly_damaging(0.822) TCGA-J2-A4AG-01 12 9313709 9313709 G T PZP Missense_Mutation p.A931D 0.12 tolerated(0.55) benign(0.05) TCGA-J2-A4AG-01 13 113200110 113200110 G C TUBGCP3 Missense_Mutation p.S413C 0.08 tolerated(0.06) benign(0.072) TCGA-J2-A4AG-01 14 52526862 52526862 C A NID2 Missense_Mutation p.Q249H 0.27 deleterious(0) probably_damaging(0.992) TCGA-J2-A4AG-01 14 65544712 65544712 G A MAX Nonsense_Mutation p.Q72* 0.17 TCGA-J2-A4AG-01 14 65544713 65544713 G A MAX Silent p.I71I 0.16 TCGA-J2-A4AG-01 14 95688095 95688095 G T CLMN Missense_Mutation p.S86Y 0.10 deleterious(0) probably_damaging(0.943) TCGA-J2-A4AG-01 16 19884024 19884024 C G GPRC5B Silent p.L48L 0.16 TCGA-J2-A4AG-01 16 27751673 27751673 T A KIAA0556 Silent p.T685T 0.09 TCGA-J2-A4AG-01 16 57601917 57601917 C T GPR114 Missense_Mutation p.A324V 0.14 deleterious(0.04) benign(0.292) TCGA-J2-A4AG-01 16 71318334 71318334 A - CMTR2 Frame_Shift_Del p.L497Wfs*9 0.18 TCGA-J2-A4AG-01 16 74660379 74660379 G A RFWD3 Silent p.I681I 0.19 TCGA-J2-A4AG-01 17 10300161 10300161 C T MYH8 Missense_Mutation p.A1441T 0.13 deleterious(0.05) benign(0.046) TCGA-J2-A4AG-01 17 18205695 18205695 C T TOP3A Missense_Mutation p.V233M 0.09 tolerated(0.09) possibly_damaging(0.82) TCGA-J2-A4AG-01 17 28776584 28776584 A T CPD Missense_Mutation p.T963S 0.12 tolerated(0.07) benign(0.004) TCGA-J2-A4AG-01 17 33521207 33521207 C - SLC35G3 Frame_Shift_Del p.L41Wfs*127 0.11 TCGA-J2-A4AG-01 17 4789857 4789857 G A MINK1 Silent p.E295E 0.16 TCGA-J2-A4AG-01 17 48655562 48655562 C G CACNA1G Missense_Mutation p.S646R 0.07 tolerated(0.18) benign(0.001) TCGA-J2-A4AG-01 17 56536222 56536222 C T HSF5 Missense_Mutation p.G543R 0.06 tolerated(0.14) benign(0.037) TCGA-J2-A4AG-01 18 28968923 28968923 C T DSG4 Silent p.N153N 0.28 TCGA-J2-A4AG-01 18 30092425 30092425 C G WBP11P1 RNA 0.11 TCGA-J2-A4AG-01 18 63547761 63547761 G T CDH7 Silent p.T663T 0.26 TCGA-J2-A4AG-01 18 63547762 63547762 G T CDH7 Nonsense_Mutation p.E664* 0.25 TCGA-J2-A4AG-01 19 14038722 14038722 G T CC2D1A Missense_Mutation p.R778L 0.09 deleterious(0) probably_damaging(0.965) TCGA-J2-A4AG-01 19 16222608 16222608 C G RAB8A 5'UTR 0.10 TCGA-J2-A4AG-01 19 17883286 17883286 G A FCHO1 Silent p.E205E 0.10 TCGA-J2-A4AG-01 19 22941413 22941413 G T ZNF99 Missense_Mutation p.A433D 0.14 deleterious(0.03) possibly_damaging(0.791) TCGA-J2-A4AG-01 19 31769253 31769253 G A TSHZ3 Silent p.D482D 0.13 TCGA-J2-A4AG-01 19 37880337 37880337 A T ZNF527 Missense_Mutation p.R462S 0.06 deleterious(0.02) possibly_damaging(0.578) TCGA-J2-A4AG-01 19 47761660 47761660 G A CCDC9 Translation_Start_Site p.M1? 0.08 deleterious(0) possibly_damaging(0.584) TCGA-J2-A4AG-01 19 57839339 57839339 A G ZNF543 Missense_Mutation p.K170R 0.15 deleterious(0.04) benign(0.003) TCGA-J2-A4AG-01 1 144882638 144882638 G C PDE4DIP Missense_Mutation p.S1127R 0.08 tolerated(0.07) benign(0.008) TCGA-J2-A4AG-01 1 152329055 152329055 G T FLG2 Missense_Mutation p.R403S 0.04 unknown(0) TCGA-J2-A4AG-01 1 153283156 153283156 C A PGLYRP3 5'UTR 0.05 TCGA-J2-A4AG-01 1 155239391 155239391 C A CLK2 Missense_Mutation p.R96L 0.14 tolerated(0.05) benign(0.43) TCGA-J2-A4AG-01 1 163117184 163117184 T C RGS5 Missense_Mutation p.D169G 0.21 deleterious(0) probably_damaging(1) TCGA-J2-A4AG-01 1 182354917 182354917 T A GLUL Missense_Mutation p.N194I 0.13 deleterious(0) probably_damaging(0.993) TCGA-J2-A4AG-01 1 19440472 19440472 G T UBR4 Nonsense_Mutation p.C3765* 0.15 TCGA-J2-A4AG-01 1 205495937 205495937 G T CDK18 Missense_Mutation p.G264V 0.18 deleterious(0) possibly_damaging(0.896) TCGA-J2-A4AG-01 1 216262362 216262362 T A USH2A Silent p.I1626I 0.12 TCGA-J2-A4AG-01 1 223177897 223177897 C T DISP1 Missense_Mutation p.A1053V 0.20 tolerated(0.22) benign(0.425) TCGA-J2-A4AG-01 1 248437045 248437045 G T OR2T33 Silent p.V24V 0.23 TCGA-J2-A4AG-01 1 248845027 248845027 T C OR14I1 Silent p.V193V 0.30 TCGA-J2-A4AG-01 1 2541155 2541155 G A MMEL1 Silent p.Y136Y 0.16 TCGA-J2-A4AG-01 1 43630368 43630368 C A EBNA1BP2 Silent p.R327R 0.16 TCGA-J2-A4AG-01 1 67517708 67517708 T C SLC35D1 Missense_Mutation p.T127A 0.07 deleterious(0) probably_damaging(0.997) TCGA-J2-A4AG-01 20 19664974 19664974 C T SLC24A3 Silent p.I352I 0.17 TCGA-J2-A4AG-01 20 36718325 36718325 G T RPRD1B 3'UTR 0.10 TCGA-J2-A4AG-01 20 42195004 42195004 T A SGK2 Missense_Mutation p.C17S 0.06 deleterious_low_confidence(0.02) benign(0.152) TCGA-J2-A4AG-01 20 61941839 61941839 G C COL20A1 Missense_Mutation p.G457A 0.18 tolerated(0.35) possibly_damaging(0.51) TCGA-J2-A4AG-01 22 25623918 25623918 C T CRYBB2 Missense_Mutation p.T91M 0.07 deleterious(0.03) possibly_damaging(0.784) TCGA-J2-A4AG-01 22 32477942 32477942 C A SLC5A1 Silent p.A189A 0.11 TCGA-J2-A4AG-01 2 141243003 141243003 C G LRP1B Missense_Mutation p.E3112Q 0.12 benign(0.403) TCGA-J2-A4AG-01 2 145155885 145155885 G T ZEB2 Silent p.R957R 0.14 TCGA-J2-A4AG-01 2 153574997 153574997 C A ARL6IP6 5'UTR 0.33 TCGA-J2-A4AG-01 2 165768148 165768148 C A SLC38A11 Nonsense_Mutation p.E265* 0.18 TCGA-J2-A4AG-01 2 176983781 176983782 AA - HOXD10 Frame_Shift_Del p.K283Rfs*18 0.08 TCGA-J2-A4AG-01 2 225750440 225750440 G A DOCK10 Missense_Mutation p.S232F 0.19 deleterious(0) probably_damaging(0.953) TCGA-J2-A4AG-01 2 241710412 241710412 G A KIF1A Silent p.S439S 0.07 TCGA-J2-A4AG-01 2 48915911 48915911 C A LHCGR Missense_Mutation p.R342L 0.12 tolerated(0.26) benign(0.081) TCGA-J2-A4AG-01 2 89278276 89278276 C G IGKV3-7 Missense_Mutation p.R20T 0.10 deleterious(0.01) benign(0.006) TCGA-J2-A4AG-01 2 90139426 90139426 C A IGKV1D-16 Missense_Mutation p.P66H 0.10 deleterious(0) probably_damaging(0.986) TCGA-J2-A4AG-01 3 127325633 127325633 C T MCM2 Silent p.A358A 0.08 TCGA-J2-A4AG-01 3 15311359 15311359 G A SH3BP5 Missense_Mutation p.T119M 0.05 deleterious(0) probably_damaging(0.987) TCGA-J2-A4AG-01 3 33442469 33442469 T C UBP1 Silent p.S357S 0.19 TCGA-J2-A4AG-01 3 93781877 93781877 G T NSUN3 5'UTR 0.26 TCGA-J2-A4AG-01 4 155250781 155250781 G T DCHS2 Missense_Mutation p.S816Y 0.12 tolerated(0.25) possibly_damaging(0.706) TCGA-J2-A4AG-01 4 156847223 156847223 C A CTSO Splice_Site p.X311_splice 0.22 TCGA-J2-A4AG-01 4 187630589 187630589 C T FAT1 Silent p.A131A 0.03 TCGA-J2-A4AG-01 4 23797458 23797458 C A PPARGC1A Missense_Mutation p.S795I 0.16 deleterious(0) unknown(0) TCGA-J2-A4AG-01 4 74702522 74702522 T C CXCL6 Missense_Mutation p.C19R 0.25 deleterious(0.02) benign(0.352) TCGA-J2-A4AG-01 5 140255260 140255260 C A PCDHA12 Missense_Mutation p.S68Y 0.14 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-J2-A4AG-01 5 140581672 140581672 G - PCDHB11 Frame_Shift_Del p.A776Qfs*38 0.09 TCGA-J2-A4AG-01 5 14336661 14336661 C T TRIO Missense_Mutation p.A624V 0.07 benign(0.312) TCGA-J2-A4AG-01 5 178139986 178139986 T C ZNF354A Missense_Mutation p.Y298C 0.16 deleterious(0.01) possibly_damaging(0.698) TCGA-J2-A4AG-01 5 33549426 33549426 G T ADAMTS12 Missense_Mutation p.D1396E 0.13 tolerated(0.34) benign(0.032) TCGA-J2-A4AG-01 5 82940364 82940364 C A HAPLN1 Missense_Mutation p.W198L 0.19 deleterious(0) probably_damaging(0.934) TCGA-J2-A4AG-01 5 83549983 83549983 G T EDIL3 Missense_Mutation p.P39T 0.10 tolerated(1) benign(0.001) TCGA-J2-A4AG-01 5 90159639 90159639 C - GPR98 Frame_Shift_Del p.L5941* 0.14 TCGA-J2-A4AG-01 5 90678629 90678629 C T ARRDC3 Splice_Site p.X94_splice 0.06 TCGA-J2-A4AG-01 6 116784525 116784525 T A FAM26F Missense_Mutation p.V202D 0.13 deleterious(0) probably_damaging(0.999) TCGA-J2-A4AG-01 6 66205197 66205197 G A EYS Missense_Mutation p.P36L 0.13 tolerated_low_confidence(0.17) benign(0.006) TCGA-J2-A4AG-01 6 90660323 90660323 G A BACH2 Missense_Mutation p.P501L 0.26 deleterious(0.02) probably_damaging(1) TCGA-J2-A4AG-01 7 100675990 100675990 C T MUC17 Silent p.S431S 0.14 TCGA-J2-A4AG-01 7 128491575 128491575 G T FLNC Missense_Mutation p.G1912V 0.16 deleterious(0) probably_damaging(1) TCGA-J2-A4AG-01 7 4839054 4839054 G A RADIL Silent p.D1061D 0.07 TCGA-J2-A4AG-01 7 63529299 63529299 G C ZNF727 Missense_Mutation p.E12Q 0.19 deleterious(0.01) probably_damaging(0.982) TCGA-J2-A4AG-01 7 87022300 87022300 G T CROT Silent p.L573L 0.14 TCGA-J2-A4AG-01 7 87022301 87022301 G T CROT Missense_Mutation p.V574F 0.14 deleterious(0.01) possibly_damaging(0.595) TCGA-J2-A4AG-01 8 113326771 113326771 G C CSMD3 Missense_Mutation p.P2479R 0.15 deleterious(0.02) probably_damaging(0.985) TCGA-J2-A4AG-01 8 113518987 113518987 G T CSMD3 Missense_Mutation p.H1610N 0.15 tolerated(0.38) probably_damaging(0.985) TCGA-J2-A4AG-01 8 23054712 23054712 C A TNFRSF10A Silent p.P340P 0.07 TCGA-J2-A4AG-01 8 35425721 35425721 G C UNC5D Missense_Mutation p.G143A 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-J2-A4AG-01 8 42275467 42275467 C T SLC20A2 Missense_Mutation p.V605M 0.14 deleterious(0) probably_damaging(0.955) TCGA-J2-A4AG-01 8 51442786 51442786 T C SNTG1 Silent p.S172S 0.08 TCGA-J2-A4AG-01 8 59405017 59405017 G A CYP7A1 Silent p.F370F 0.08 TCGA-J2-A4AG-01 8 81577153 81577153 C A ZNF704 Missense_Mutation p.R275L 0.09 tolerated(0.56) benign(0.226) TCGA-J2-A4AG-01 9 101585613 101585613 G T GALNT12 Missense_Mutation p.W149C 0.06 deleterious(0) probably_damaging(0.992) TCGA-J2-A4AG-01 9 21201678 21201678 C A IFNA7 Missense_Mutation p.A163S 0.09 deleterious(0.03) probably_damaging(0.923) TCGA-J2-A4AG-01 X 106070416 106070416 A C TBC1D8B Missense_Mutation p.K351T 0.08 deleterious(0.01) benign(0.367) TCGA-J2-A4AG-01 X 153138062 153138062 C A L1CAM Missense_Mutation p.G61V 0.08 deleterious(0) probably_damaging(0.999) TCGA-J2-A4AG-01 X 54785265 54785265 G T ITIH6 Silent p.V414V 0.09 TCGA-J2-A4AG-01 X 70466527 70466527 G T ZMYM3 Nonsense_Mutation p.S777* 0.10 TCGA-L4-A4E5-01 10 101150160 101150160 C A CNNM1 Silent p.T924T 0.19 TCGA-L4-A4E5-01 10 120354547 120354547 C A PRLHR Silent p.V70V 0.24 TCGA-L4-A4E5-01 10 127462520 127462520 C A MMP21 Missense_Mutation p.D193Y 0.58 deleterious(0) possibly_damaging(0.746) TCGA-L4-A4E5-01 10 15655727 15655727 C G ITGA8 Silent p.L495L 0.26 TCGA-L4-A4E5-01 10 15875667 15875667 G A FAM188A Missense_Mutation p.S231F 0.33 deleterious(0.03) probably_damaging(1) TCGA-L4-A4E5-01 10 17363074 17363074 G A ST8SIA6 Silent p.L334L 0.29 TCGA-L4-A4E5-01 10 18254432 18254432 G T SLC39A12 Silent p.L188L 0.22 TCGA-L4-A4E5-01 10 35928844 35928844 A G FZD8 Missense_Mutation p.V505A 0.11 tolerated(0.07) benign(0.377) TCGA-L4-A4E5-01 10 43280019 43280019 G T BMS1 Splice_Site p.X59_splice 0.23 TCGA-L4-A4E5-01 10 50960780 50960780 C A OGDHL Missense_Mutation p.G128C 0.32 deleterious(0) probably_damaging(0.999) TCGA-L4-A4E5-01 10 55568676 55568676 G A PCDH15 Missense_Mutation p.P646S 0.45 deleterious_low_confidence(0.02) unknown(0) TCGA-L4-A4E5-01 10 70332915 70332915 G A TET1 Missense_Mutation p.G274S 0.31 tolerated(0.11) possibly_damaging(0.788) TCGA-L4-A4E5-01 10 73553142 73553142 C A CDH23 5'Flank 0.32 TCGA-L4-A4E5-01 10 85984760 85984760 G T LRIT2 Missense_Mutation p.S74Y 0.36 deleterious(0) possibly_damaging(0.845) TCGA-L4-A4E5-01 11 105009615 105009615 G T CARD18 Silent p.P66P 0.28 TCGA-L4-A4E5-01 11 105929812 105929812 T C KBTBD3 Missense_Mutation p.M5V 0.39 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-L4-A4E5-01 11 113235730 113235730 G T TTC12 Missense_Mutation p.V664L 0.29 deleterious(0) probably_damaging(0.93) TCGA-L4-A4E5-01 11 114393049 114393049 C A NXPE1 Missense_Mutation p.D287Y 0.47 deleterious(0) probably_damaging(0.981) TCGA-L4-A4E5-01 11 116619159 116619159 C A BUD13 3'UTR 0.52 TCGA-L4-A4E5-01 11 119185742 119185742 C T MCAM Silent p.K67K 0.07 TCGA-L4-A4E5-01 11 123901127 123901127 T A OR10G8 Silent p.A266A 0.60 TCGA-L4-A4E5-01 11 14990275 14990275 G A CALCA 3'UTR 0.46 TCGA-L4-A4E5-01 11 16077320 16077320 G T SOX6 Missense_Mutation p.T410N 0.45 tolerated(0.43) benign(0.301) TCGA-L4-A4E5-01 11 5221900 5221900 C G OR51V1 Missense_Mutation p.V11L 0.43 tolerated(1) benign(0.097) TCGA-L4-A4E5-01 11 55340429 55340429 G C OR4C16 Missense_Mutation p.G276R 0.41 deleterious(0.03) probably_damaging(0.995) TCGA-L4-A4E5-01 11 55761932 55761932 G T OR5F1 Missense_Mutation p.T57K 0.23 deleterious(0.02) possibly_damaging(0.905) TCGA-L4-A4E5-01 11 56019916 56019916 G T OR5T3 Nonsense_Mutation p.E81* 0.26 TCGA-L4-A4E5-01 11 56019917 56019917 A T OR5T3 Missense_Mutation p.E81V 0.27 tolerated(0.56) benign(0.001) TCGA-L4-A4E5-01 11 56019918 56019918 G T OR5T3 Missense_Mutation p.E81D 0.26 tolerated(0.31) benign(0.09) TCGA-L4-A4E5-01 11 56409476 56409476 C A OR5AP2 Missense_Mutation p.C147F 0.28 deleterious(0) probably_damaging(0.924) TCGA-L4-A4E5-01 11 56468178 56468178 G C OR9G1 Silent p.G105G 0.15 TCGA-L4-A4E5-01 11 59271337 59271337 T C OR4D11 Missense_Mutation p.C97R 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-L4-A4E5-01 11 6190690 6190690 C A OR52B2 Silent p.L289L 0.58 TCGA-L4-A4E5-01 11 62752133 62752133 C T SLC22A6 Silent p.V10V 0.20 TCGA-L4-A4E5-01 11 66411601 66411601 T A RBM14-RBM4 Nonstop_Mutation p.*340Kext*75 0.32 TCGA-L4-A4E5-01 11 67074511 67074511 A T SSH3 Splice_Site p.X155_splice 0.25 TCGA-L4-A4E5-01 11 7111185 7111185 C A RBMXL2 Silent p.S278S 0.53 TCGA-L4-A4E5-01 11 76371559 76371559 C A LRRC32 Missense_Mutation p.G360C 0.37 deleterious(0) possibly_damaging(0.738) TCGA-L4-A4E5-01 11 8479028 8479028 T A STK33 Splice_Site p.X187_splice 0.45 TCGA-L4-A4E5-01 12 106460637 106460637 C A NUAK1 Missense_Mutation p.M643I 0.23 tolerated(0.14) probably_damaging(0.958) TCGA-L4-A4E5-01 12 109893952 109893952 C T KCTD10 Missense_Mutation p.V232I 0.06 deleterious(0.01) possibly_damaging(0.861) TCGA-L4-A4E5-01 12 111956183 111956183 G A ATXN2 Silent p.S505S 0.28 TCGA-L4-A4E5-01 12 113319606 113319606 G T RPH3A Missense_Mutation p.L427F 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-L4-A4E5-01 12 113379695 113379695 A T OAS3 Intron 0.32 TCGA-L4-A4E5-01 12 120783387 120783387 C A MSI1 3'UTR 0.22 TCGA-L4-A4E5-01 12 121093846 121093846 G A CABP1 Intron 0.22 TCGA-L4-A4E5-01 12 123186899 123186899 C A HCAR2 Missense_Mutation p.R311L 0.18 tolerated(0.46) benign(0.03) TCGA-L4-A4E5-01 12 123200353 123200353 C A HCAR3 Missense_Mutation p.R311L 0.13 tolerated(0.25) benign(0.265) TCGA-L4-A4E5-01 12 124417997 124417997 C T DNAH10 Silent p.T4354T 0.27 TCGA-L4-A4E5-01 12 125834188 125834188 C A TMEM132B Silent p.P81P 0.32 TCGA-L4-A4E5-01 12 14613614 14613614 C T ATF7IP Missense_Mutation p.P782S 0.38 deleterious_low_confidence(0.03) unknown(0) TCGA-L4-A4E5-01 12 14766090 14766090 C T GUCY2C Silent p.L1061L 0.22 TCGA-L4-A4E5-01 12 28458614 28458614 G T CCDC91 Nonsense_Mutation p.E48* 0.27 TCGA-L4-A4E5-01 12 31236900 31236900 G A DDX11 Missense_Mutation p.G100R 0.40 tolerated(0.35) benign(0.002) TCGA-L4-A4E5-01 12 4479936 4479936 G T FGF23 Missense_Mutation p.P110Q 0.26 tolerated(0.67) possibly_damaging(0.843) TCGA-L4-A4E5-01 12 50196879 50196879 C A NCKAP5L Splice_Site p.X64_splice 0.21 TCGA-L4-A4E5-01 12 5021199 5021199 G T KCNA1 Missense_Mutation p.D219Y 0.27 deleterious(0) possibly_damaging(0.787) TCGA-L4-A4E5-01 12 5021552 5021552 G T KCNA1 Silent p.G336G 0.32 TCGA-L4-A4E5-01 12 5154619 5154619 C A KCNA5 Missense_Mutation p.L436M 0.25 tolerated(0.1) probably_damaging(1) TCGA-L4-A4E5-01 12 51773503 51773503 C G GALNT6 Silent p.V21V 0.27 TCGA-L4-A4E5-01 12 52183073 52183073 G T SCN8A Missense_Mutation p.E1430D 0.31 tolerated(0.29) benign(0.004) TCGA-L4-A4E5-01 12 52407514 52407514 C A GRASP Silent p.I166I 0.25 TCGA-L4-A4E5-01 12 53186142 53186142 G A KRT3 Silent p.L357L 0.24 TCGA-L4-A4E5-01 12 63994156 63994156 C A DPY19L2 Missense_Mutation p.G430V 0.33 tolerated(0.09) benign(0.073) TCGA-L4-A4E5-01 12 72025989 72025989 T C ZFC3H1 Silent p.R1041R 0.34 TCGA-L4-A4E5-01 12 72771778 72771778 C A TRHDE Silent p.R353R 0.41 TCGA-L4-A4E5-01 12 78510650 78510650 C A NAV3 Missense_Mutation p.S912Y 0.34 deleterious(0.01) probably_damaging(0.967) TCGA-L4-A4E5-01 12 81101884 81101884 C A MYF6 Missense_Mutation p.P129H 0.40 deleterious(0) probably_damaging(1) TCGA-L4-A4E5-01 12 81472177 81472177 C A ACSS3 Missense_Mutation p.T93K 0.32 deleterious(0) possibly_damaging(0.541) TCGA-L4-A4E5-01 12 93793183 93793183 T C NUDT4 3'UTR 0.08 TCGA-L4-A4E5-01 12 98848691 98848691 C A SLC9A7P1 RNA 0.20 TCGA-L4-A4E5-01 13 114757965 114757965 C A RASA3 Missense_Mutation p.M747I 0.55 tolerated(0.09) probably_damaging(0.943) TCGA-L4-A4E5-01 13 29600186 29600186 G T MTUS2 Missense_Mutation p.D461Y 0.44 deleterious(0.02) possibly_damaging(0.66) TCGA-L4-A4E5-01 13 48955538 48955538 C T RB1 Nonsense_Mutation p.R552* 0.54 TCGA-L4-A4E5-01 13 61102533 61102533 G T TDRD3 Nonsense_Mutation p.G392* 0.36 TCGA-L4-A4E5-01 13 79191136 79191136 C G RNF219 Missense_Mutation p.V254L 0.43 tolerated(1) benign(0.016) TCGA-L4-A4E5-01 13 84453905 84453905 G A SLITRK1 Nonsense_Mutation p.Q580* 0.58 TCGA-L4-A4E5-01 14 102792914 102792914 A T ZNF839 Missense_Mutation p.Q294L 0.38 tolerated(0.12) benign(0.177) TCGA-L4-A4E5-01 14 20502819 20502819 C A OR4K13 Silent p.V33V 0.24 TCGA-L4-A4E5-01 14 20692141 20692141 C A OR11H6 Nonsense_Mutation p.Y91* 0.36 TCGA-L4-A4E5-01 14 23842152 23842152 G T IL25 5'UTR 0.40 TCGA-L4-A4E5-01 14 23889126 23889126 C T MYH7 Silent p.E1218E 0.26 TCGA-L4-A4E5-01 14 24900790 24900790 C T KHNYN Missense_Mutation p.S108L 0.38 deleterious(0) benign(0.019) TCGA-L4-A4E5-01 14 42360832 42360832 G A LRFN5 Missense_Mutation p.V589M 0.21 tolerated(0.22) benign(0.003) TCGA-L4-A4E5-01 14 60749937 60749937 A G PPM1A Silent p.K245K 0.24 TCGA-L4-A4E5-01 14 64434478 64434478 G T SYNE2 Missense_Mutation p.D348Y 0.30 possibly_damaging(0.894) TCGA-L4-A4E5-01 14 95108233 95108233 C G SERPINA13P RNA 0.46 TCGA-L4-A4E5-01 15 24922725 24922725 G T NPAP1 Missense_Mutation p.V571L 0.41 tolerated(1) benign(0.019) TCGA-L4-A4E5-01 15 32460144 32460144 A T CHRNA7 Nonsense_Mutation p.R361* 0.26 TCGA-L4-A4E5-01 15 40093791 40093791 G T GPR176 Missense_Mutation p.R364S 0.49 deleterious(0) probably_damaging(0.91) TCGA-L4-A4E5-01 15 48444471 48444471 C G MYEF2 Missense_Mutation p.M366I 0.37 tolerated(0.24) benign(0) TCGA-L4-A4E5-01 15 50535003 50535003 G T HDC Silent p.S481S 0.54 TCGA-L4-A4E5-01 15 51250712 51250712 C G AP4E1 Silent p.L524L 0.50 TCGA-L4-A4E5-01 15 75190115 75190115 T A MPI 3'UTR 0.50 TCGA-L4-A4E5-01 15 85669587 85669587 G T PDE8A Silent p.S745S 0.42 TCGA-L4-A4E5-01 16 11873190 11873190 A G ZC3H7A Silent p.L46L 0.38 TCGA-L4-A4E5-01 16 18882128 18882128 T C SMG1 Silent p.L795L 0.70 TCGA-L4-A4E5-01 16 24268276 24268276 C A CACNG3 Nonsense_Mutation p.C67* 0.61 TCGA-L4-A4E5-01 16 27497405 27497405 C A GTF3C1 Silent p.R1257R 0.44 TCGA-L4-A4E5-01 16 31383808 31383808 C A ITGAX Missense_Mutation p.A757D 0.36 deleterious(0.01) benign(0.004) TCGA-L4-A4E5-01 16 31427951 31427951 G A ITGAD Missense_Mutation p.R828Q 0.32 deleterious(0.04) possibly_damaging(0.543) TCGA-L4-A4E5-01 16 31470938 31470938 G T ARMC5 Missense_Mutation p.K31N 0.17 tolerated(0.19) unknown(0) TCGA-L4-A4E5-01 16 33020674 33020674 G T IGHV3OR16-8 Nonsense_Mutation p.G28* 0.16 TCGA-L4-A4E5-01 16 33020855 33020855 C G IGHV3OR16-8 Missense_Mutation p.T88S 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.578) TCGA-L4-A4E5-01 16 57151419 57151419 G T CPNE2 Missense_Mutation p.Q149H 0.45 deleterious(0) possibly_damaging(0.737) TCGA-L4-A4E5-01 16 57243045 57243045 A T RSPRY1 Silent p.P154P 0.49 TCGA-L4-A4E5-01 16 67943379 67943379 G T PSKH1 Missense_Mutation p.A243S 0.26 tolerated(0.32) probably_damaging(0.996) TCGA-L4-A4E5-01 16 71317669 71317669 G A CMTR2 Nonsense_Mutation p.Q719* 0.51 TCGA-L4-A4E5-01 16 9923437 9923437 A C GRIN2A Missense_Mutation p.V617G 0.50 deleterious(0) probably_damaging(1) TCGA-L4-A4E5-01 17 10267804 10267804 G T MYH13 Missense_Mutation p.P15H 0.25 deleterious(0.02) probably_damaging(0.997) TCGA-L4-A4E5-01 17 10399330 10399330 G T MYH1 Missense_Mutation p.S1702R 0.49 tolerated(0.08) possibly_damaging(0.47) TCGA-L4-A4E5-01 17 29652853 29652853 A T NF1 Missense_Mutation p.Q1617H 0.28 deleterious(0.01) probably_damaging(0.976) TCGA-L4-A4E5-01 17 37596726 37596726 C A MED1 Silent p.T104T 0.28 TCGA-L4-A4E5-01 17 39597093 39597093 G T KRT38 Silent p.P27P 0.32 TCGA-L4-A4E5-01 17 41955176 41955176 C A MPP2 Nonstop_Mutation p.*553Lext*12 0.21 TCGA-L4-A4E5-01 17 43516990 43516990 C T PLEKHM1 Missense_Mutation p.G971E 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-L4-A4E5-01 17 46030566 46030566 A T PRR15L Missense_Mutation p.F12Y 0.32 deleterious(0.02) possibly_damaging(0.733) TCGA-L4-A4E5-01 17 5461869 5461869 A G NLRP1 Missense_Mutation p.L716P 0.32 deleterious(0.02) probably_damaging(0.99) TCGA-L4-A4E5-01 17 56389368 56389368 G A BZRAP1 Silent p.G938G 0.37 TCGA-L4-A4E5-01 17 60469302 60469302 G T EFCAB3 Nonsense_Mutation p.E143* 0.25 TCGA-L4-A4E5-01 17 61914970 61914970 G A SMARCD2 Missense_Mutation p.P78S 0.11 tolerated_low_confidence(0.17) benign(0.03) TCGA-L4-A4E5-01 17 7578475 7578475 G A TP53 Missense_Mutation p.P152L 0.46 tolerated(0.08) probably_damaging(0.91) TCGA-L4-A4E5-01 17 78211342 78211342 G A SLC26A11 Missense_Mutation p.V312M 0.39 deleterious(0) possibly_damaging(0.531) TCGA-L4-A4E5-01 18 31324136 31324136 G C ASXL3 Missense_Mutation p.G1442R 0.39 probably_damaging(0.916) TCGA-L4-A4E5-01 18 31324783 31324783 C A ASXL3 Silent p.P1657P 0.48 TCGA-L4-A4E5-01 18 31325211 31325211 C A ASXL3 Missense_Mutation p.P1800H 0.53 benign(0.332) TCGA-L4-A4E5-01 18 3880085 3880085 C A DLGAP1 5'UTR 0.44 TCGA-L4-A4E5-01 18 56415185 56415185 A T MALT1 3'UTR 0.21 TCGA-L4-A4E5-01 18 67345071 67345071 G T DOK6 Missense_Mutation p.V131L 0.30 tolerated(0.18) benign(0.145) TCGA-L4-A4E5-01 18 67563079 67563079 T A CD226 Silent p.I195I 0.31 TCGA-L4-A4E5-01 18 74980827 74980827 C T GALR1 Missense_Mutation p.T340I 0.23 deleterious(0.05) benign(0.265) TCGA-L4-A4E5-01 18 77193733 77193733 G A NFATC1 Missense_Mutation p.V448M 0.17 deleterious(0) possibly_damaging(0.616) TCGA-L4-A4E5-01 19 14591296 14591296 C G GIPC1 Missense_Mutation p.R159P 0.56 deleterious(0) possibly_damaging(0.722) TCGA-L4-A4E5-01 19 22363521 22363521 C A ZNF676 Missense_Mutation p.G333V 0.12 deleterious(0) possibly_damaging(0.485) TCGA-L4-A4E5-01 19 42085895 42085895 G T CEACAM21 Missense_Mutation p.R205M 0.31 deleterious(0.02) possibly_damaging(0.593) TCGA-L4-A4E5-01 19 52327388 52327388 T A FPR3 Missense_Mutation p.H129Q 0.41 deleterious(0.02) probably_damaging(0.924) TCGA-L4-A4E5-01 19 54782813 54782813 C A LILRB2 Missense_Mutation p.R270L 0.35 tolerated(0.35) benign(0.042) TCGA-L4-A4E5-01 19 55019245 55019245 T C LAIR2 Silent p.D70D 0.47 TCGA-L4-A4E5-01 19 58868531 58868531 G T ZNF497 Missense_Mutation p.S157R 0.41 deleterious(0) benign(0.069) TCGA-L4-A4E5-01 19 7523433 7523433 C T ARHGEF18 Silent p.L551L 0.56 TCGA-L4-A4E5-01 19 9087985 9087985 G T MUC16 Missense_Mutation p.S1277Y 0.46 unknown(0) TCGA-L4-A4E5-01 1 100327860 100327860 G T AGL Missense_Mutation p.R114L 0.26 tolerated(0.14) benign(0.001) TCGA-L4-A4E5-01 1 110028744 110028744 G T ATXN7L2 Missense_Mutation p.D65Y 0.35 deleterious(0) probably_damaging(0.953) TCGA-L4-A4E5-01 1 111663244 111663244 A G DRAM2 Silent p.F137F 0.32 TCGA-L4-A4E5-01 1 115216366 115216366 G T AMPD1 Missense_Mutation p.P693H 0.40 deleterious(0.01) probably_damaging(0.995) TCGA-L4-A4E5-01 1 118165981 118165981 A T FAM46C Missense_Mutation p.N164I 0.15 deleterious(0) probably_damaging(0.998) TCGA-L4-A4E5-01 1 118568009 118568009 C T SPAG17 Nonsense_Mutation p.W1254* 0.28 TCGA-L4-A4E5-01 1 12856013 12856013 C A PRAMEF1 Silent p.T431T 0.07 TCGA-L4-A4E5-01 1 144917816 144917816 T C PDE4DIP Intron 0.10 TCGA-L4-A4E5-01 1 152186003 152186003 G T HRNR Nonsense_Mutation p.S2701* 0.22 TCGA-L4-A4E5-01 1 152280529 152280529 C A FLG Missense_Mutation p.G2278V 0.38 probably_damaging(0.953) TCGA-L4-A4E5-01 1 155030618 155030618 T G ADAM15 Missense_Mutation p.S570A 0.36 tolerated(0.07) benign(0.019) TCGA-L4-A4E5-01 1 156876137 156876137 G A PEAR1 Nonsense_Mutation p.W126* 0.10 TCGA-L4-A4E5-01 1 158325709 158325709 G T CD1E Missense_Mutation p.V240L 0.58 deleterious(0) benign(0.303) TCGA-L4-A4E5-01 1 158648289 158648289 C A SPTA1 Missense_Mutation p.K238N 0.18 deleterious(0) possibly_damaging(0.9) TCGA-L4-A4E5-01 1 159163344 159163344 C T CADM3 Missense_Mutation p.L206F 0.23 deleterious(0.01) probably_damaging(0.953) TCGA-L4-A4E5-01 1 160801009 160801009 A G CD244 3'UTR 0.32 TCGA-L4-A4E5-01 1 167095322 167095322 C A DUSP27 Missense_Mutation p.D318E 0.27 tolerated(0.3) benign(0.045) TCGA-L4-A4E5-01 1 175334331 175334331 G C TNR Missense_Mutation p.A801G 0.25 tolerated(0.35) probably_damaging(0.947) TCGA-L4-A4E5-01 1 178514940 178514940 A T C1ORF220 Missense_Mutation p.Q109L 0.16 benign(0.145) TCGA-L4-A4E5-01 1 179347826 179347826 G C AXDND1 Missense_Mutation p.K143N 0.23 tolerated(0.65) benign(0) TCGA-L4-A4E5-01 1 19611205 19611205 T A AKR7A3 Missense_Mutation p.T227S 0.23 tolerated(1) benign(0) TCGA-L4-A4E5-01 1 196227563 196227563 T A KCNT2 Missense_Mutation p.H991L 0.63 tolerated(0.39) benign(0.013) TCGA-L4-A4E5-01 1 201196294 201196294 A T IGFN1 Missense_Mutation p.T3691S 0.60 benign(0.425) TCGA-L4-A4E5-01 1 214491480 214491480 C G SMYD2 Nonsense_Mutation p.S136* 0.68 TCGA-L4-A4E5-01 1 221057636 221057636 G T HLX Missense_Mutation p.G353C 0.31 deleterious(0.01) possibly_damaging(0.855) TCGA-L4-A4E5-01 1 221879545 221879545 G A DUSP10 Missense_Mutation p.P359S 0.31 deleterious(0.01) probably_damaging(1) TCGA-L4-A4E5-01 1 222712029 222712029 T C HHIPL2 Missense_Mutation p.N513S 0.24 deleterious(0) probably_damaging(0.978) TCGA-L4-A4E5-01 1 228033725 228033725 G T PRSS38 Missense_Mutation p.G266V 0.26 deleterious(0) probably_damaging(0.999) TCGA-L4-A4E5-01 1 228482556 228482556 A T OBSCN Missense_Mutation p.E4253V 0.31 benign(0.175) TCGA-L4-A4E5-01 1 236201504 236201504 G T NID1 Missense_Mutation p.H395Q 0.71 tolerated(0.25) benign(0.004) TCGA-L4-A4E5-01 1 237791208 237791208 C T RYR2 Missense_Mutation p.R2090W 0.14 probably_damaging(1) TCGA-L4-A4E5-01 1 26104810 26104810 G A MAN1C1 Missense_Mutation p.R491H 0.31 deleterious(0) probably_damaging(0.985) TCGA-L4-A4E5-01 1 27057661 27057661 C T ARID1A Nonsense_Mutation p.Q457* 0.25 TCGA-L4-A4E5-01 1 33160497 33160497 T A SYNC Missense_Mutation p.Q401L 0.30 tolerated(0.09) possibly_damaging(0.854) TCGA-L4-A4E5-01 1 34123663 34123663 C T CSMD2 Missense_Mutation p.G1404S 0.23 deleterious(0.01) probably_damaging(0.918) TCGA-L4-A4E5-01 1 40768852 40768852 C A COL9A2 Silent p.R518R 0.44 TCGA-L4-A4E5-01 1 42645382 42645382 T A FOXJ3 Nonstop_Mutation p.*623Lext*10 0.25 TCGA-L4-A4E5-01 1 46669138 46669138 G T LURAP1 Missense_Mutation p.D14Y 0.28 deleterious(0) probably_damaging(0.962) TCGA-L4-A4E5-01 1 50885389 50885389 A T DMRTA2 Missense_Mutation p.F193I 0.36 deleterious(0.03) possibly_damaging(0.587) TCGA-L4-A4E5-01 1 54060032 54060032 G A GLIS1 Silent p.L182L 0.15 TCGA-L4-A4E5-01 1 67148047 67148047 C A SGIP1 Missense_Mutation p.T437N 0.29 tolerated(0.31) benign(0.054) TCGA-L4-A4E5-01 1 67148048 67148048 C G SGIP1 Silent p.T437T 0.29 TCGA-L4-A4E5-01 1 77093181 77093181 T C ST6GALNAC3 Missense_Mutation p.L223P 0.26 benign(0.266) TCGA-L4-A4E5-01 1 89847420 89847420 G A GBP6 Missense_Mutation p.D347N 0.34 deleterious(0.04) possibly_damaging(0.521) TCGA-L4-A4E5-01 1 91382337 91382337 T G ZNF644 3'UTR 0.41 TCGA-L4-A4E5-01 1 92185712 92185712 G A TGFBR3 Missense_Mutation p.P384L 0.20 deleterious(0.01) probably_damaging(0.917) TCGA-L4-A4E5-01 20 33203843 33203843 T C PIGU Intron 0.34 TCGA-L4-A4E5-01 20 33592273 33592273 C T TRPC4AP Silent p.Q679Q 0.64 TCGA-L4-A4E5-01 20 40102031 40102031 C A CHD6 Silent p.G865G 0.29 TCGA-L4-A4E5-01 20 43945347 43945347 C A RBPJL Nonsense_Mutation p.C434* 0.50 TCGA-L4-A4E5-01 20 44598228 44598228 C A ZNF335 Missense_Mutation p.G102C 0.56 deleterious(0.01) benign(0.004) TCGA-L4-A4E5-01 20 49620724 49620724 C A KCNG1 Missense_Mutation p.R465L 0.36 deleterious(0.03) probably_damaging(0.998) TCGA-L4-A4E5-01 20 55917832 55917832 A - SPO11 Frame_Shift_Del p.M337* 0.30 TCGA-L4-A4E5-01 20 57415940 57415940 A T RP4-806M20.3 5'Flank 0.42 TCGA-L4-A4E5-01 20 60587908 60587908 T A TAF4 Missense_Mutation p.Q535L 0.47 benign(0.344) TCGA-L4-A4E5-01 20 62076693 62076693 C A KCNQ2 Missense_Mutation p.G138C 0.27 deleterious(0) probably_damaging(1) TCGA-L4-A4E5-01 20 62200805 62200805 C A HELZ2 Missense_Mutation p.V262L 0.27 deleterious(0.01) benign(0.254) TCGA-L4-A4E5-01 21 10862905 10862905 G T IGHV1OR21-1 Missense_Mutation p.M67I 0.09 tolerated(0.97) benign(0.089) TCGA-L4-A4E5-01 21 10910333 10910333 C T TPTE Missense_Mutation p.D475N 0.15 deleterious(0) probably_damaging(0.998) TCGA-L4-A4E5-01 21 11039277 11039277 C G BAGE2 RNA 0.06 TCGA-L4-A4E5-01 21 19628912 19628912 G A CHODL Missense_Mutation p.E56K 0.35 deleterious(0) probably_damaging(1) TCGA-L4-A4E5-01 21 27124298 27124298 A T GABPA Splice_Site p.X103_splice 0.29 TCGA-L4-A4E5-01 21 30968941 30968941 G C GRIK1-AS2 3'UTR 0.35 TCGA-L4-A4E5-01 21 32582465 32582465 C T TIAM1 Missense_Mutation p.E762K 0.31 tolerated(0.12) benign(0.095) TCGA-L4-A4E5-01 21 32638809 32638809 C T TIAM1 Missense_Mutation p.M160I 0.37 tolerated_low_confidence(0.22) benign(0) TCGA-L4-A4E5-01 21 33318380 33318380 G T HUNK Missense_Mutation p.G215C 0.27 deleterious(0) probably_damaging(0.998) TCGA-L4-A4E5-01 21 41539168 41539168 G T DSCAM Missense_Mutation p.Q999K 0.37 deleterious(0.02) benign(0.253) TCGA-L4-A4E5-01 21 43805594 43805594 G T TMPRSS3 Silent p.R166R 0.31 TCGA-L4-A4E5-01 22 21161738 21161738 G A PI4KA Silent p.P360P 0.39 TCGA-L4-A4E5-01 22 30860829 30860829 G T SEC14L3 Silent p.R214R 0.33 TCGA-L4-A4E5-01 22 37913979 37913979 G A CARD10 Silent p.L124L 0.44 TCGA-L4-A4E5-01 22 38109218 38109218 G A TRIOBP Missense_Mutation p.G86S 0.53 tolerated_low_confidence(0.56) benign(0.012) TCGA-L4-A4E5-01 22 38109219 38109219 G T TRIOBP Missense_Mutation p.G86V 0.53 tolerated_low_confidence(0.23) benign(0.003) TCGA-L4-A4E5-01 22 40037050 40037050 C G CACNA1I Missense_Mutation p.R307G 0.37 tolerated(0.18) benign(0.234) TCGA-L4-A4E5-01 2 103067322 103067322 G A IL18RAP Missense_Mutation p.D409N 0.30 deleterious(0.02) possibly_damaging(0.752) TCGA-L4-A4E5-01 2 109383271 109383271 G T RANBP2 Silent p.T2092T 0.31 TCGA-L4-A4E5-01 2 11273691 11273691 G A C2orf50 Silent p.E77E 0.31 TCGA-L4-A4E5-01 2 112849289 112849289 G T TMEM87B Missense_Mutation p.G345C 0.22 deleterious(0.01) probably_damaging(0.972) TCGA-L4-A4E5-01 2 113819796 113819796 G A IL36RN Missense_Mutation p.G71R 0.21 tolerated(0.09) probably_damaging(0.991) TCGA-L4-A4E5-01 2 11780549 11780549 C A GREB1 Missense_Mutation p.P1940Q 0.31 deleterious(0) probably_damaging(1) TCGA-L4-A4E5-01 2 121743854 121743854 C A GLI2 Missense_Mutation p.L653M 0.26 tolerated(0.67) probably_damaging(0.998) TCGA-L4-A4E5-01 2 130832386 130832386 C A POTEF Missense_Mutation p.D887Y 0.21 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-L4-A4E5-01 2 131520883 131520883 C A AMER3 Missense_Mutation p.P413Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-L4-A4E5-01 2 132021687 132021687 G T POTEE Missense_Mutation p.D887Y 0.11 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-L4-A4E5-01 2 132558674 132558674 A G C2orf27B 5'UTR 0.27 TCGA-L4-A4E5-01 2 141055420 141055420 G T LRP1B Nonsense_Mutation p.Y4308* 0.39 TCGA-L4-A4E5-01 2 141707867 141707867 A T LRP1B Missense_Mutation p.C1025S 0.24 possibly_damaging(0.845) TCGA-L4-A4E5-01 2 145157659 145157659 G A ZEB2 Silent p.A365A 0.29 TCGA-L4-A4E5-01 2 14774527 14774527 C A FAM84A Missense_Mutation p.P142T 0.50 deleterious(0.01) probably_damaging(0.998) TCGA-L4-A4E5-01 2 152482118 152482118 G A NEB Missense_Mutation p.T3461I 0.33 benign(0.057) TCGA-L4-A4E5-01 2 155555326 155555326 G T KCNJ3 Missense_Mutation p.Q13H 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-L4-A4E5-01 2 161223780 161223780 G C RBMS1 Missense_Mutation p.I66M 0.44 deleterious(0) probably_damaging(1) TCGA-L4-A4E5-01 2 168103889 168103889 C A XIRP2 Missense_Mutation p.T1996N 0.45 benign(0.22) TCGA-L4-A4E5-01 2 169764323 169764323 G T G6PC2 Missense_Mutation p.G268C 0.36 deleterious(0.02) probably_damaging(1) TCGA-L4-A4E5-01 2 17773430 17773430 G T VSNL1 Missense_Mutation p.W30L 0.26 deleterious(0.02) probably_damaging(0.988) TCGA-L4-A4E5-01 2 189975091 189975091 A G COL5A2 Missense_Mutation p.I61T 0.57 probably_damaging(0.979) TCGA-L4-A4E5-01 2 191231523 191231523 G C INPP1 Missense_Mutation p.R123T 0.37 tolerated(0.15) benign(0.079) TCGA-L4-A4E5-01 2 196749473 196749473 A G DNAH7 Silent p.L1867L 0.49 TCGA-L4-A4E5-01 2 209212620 209212620 G T PIKFYVE Silent p.G1749G 0.58 TCGA-L4-A4E5-01 2 21229594 21229594 C A APOB Missense_Mutation p.E3382D 0.31 probably_damaging(0.997) TCGA-L4-A4E5-01 2 218747119 218747119 T G TNS1 Missense_Mutation p.E296A 0.47 deleterious(0) benign(0.371) TCGA-L4-A4E5-01 2 219676956 219676956 A G CYP27A1 Missense_Mutation p.H153R 0.49 tolerated(0.76) benign(0.004) TCGA-L4-A4E5-01 2 232323096 232323096 T G NCL Silent p.R390R 0.34 TCGA-L4-A4E5-01 2 233899570 233899570 C A NEU2 Missense_Mutation p.P316T 0.39 tolerated(0.65) possibly_damaging(0.815) TCGA-L4-A4E5-01 2 27804737 27804737 T C C2orf16 Silent p.H1766H 0.26 TCGA-L4-A4E5-01 2 44201894 44201894 G A LRPPRC Silent p.L290L 0.17 TCGA-L4-A4E5-01 2 48915224 48915224 A G LHCGR Missense_Mutation p.M571T 0.25 deleterious(0) probably_damaging(1) TCGA-L4-A4E5-01 2 68270044 68270044 T C C1D Missense_Mutation p.N135D 0.44 tolerated(0.3) benign(0.001) TCGA-L4-A4E5-01 2 69472355 69472355 A G ANTXR1 Splice_Site p.X479_splice 0.29 TCGA-L4-A4E5-01 2 87042518 87042518 A G CD8B 3'Flank 0.32 TCGA-L4-A4E5-01 2 96040128 96040128 C G KCNIP3 Missense_Mutation p.T89S 0.21 tolerated(0.33) benign(0.031) TCGA-L4-A4E5-01 2 97373074 97373074 C G LMAN2L Silent p.L333L 0.30 TCGA-L4-A4E5-01 2 97377665 97377665 G A LMAN2L Missense_Mutation p.A213V 0.40 tolerated(0.12) probably_damaging(0.933) TCGA-L4-A4E5-01 3 113850171 113850171 G T DRD3 Missense_Mutation p.P267Q 0.38 tolerated(0.06) benign(0.301) TCGA-L4-A4E5-01 3 124165679 124165679 G T KALRN Nonsense_Mutation p.E1165* 0.33 TCGA-L4-A4E5-01 3 129251554 129251554 C A RHO Missense_Mutation p.A292E 0.30 deleterious(0) possibly_damaging(0.761) TCGA-L4-A4E5-01 3 129262103 129262103 G - H1FOO Frame_Shift_Del p.T15Lfs*83 0.35 TCGA-L4-A4E5-01 3 136573684 136573684 C T SLC35G2 Missense_Mutation p.R128W 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-L4-A4E5-01 3 138291772 138291772 T A CEP70 Intron 0.31 TCGA-L4-A4E5-01 3 139180975 139180975 G C RBP2 Missense_Mutation p.S77R 0.37 deleterious(0.01) benign(0.094) TCGA-L4-A4E5-01 3 145789157 145789157 C A PLOD2 Missense_Mutation p.M634I 0.33 deleterious(0) probably_damaging(0.962) TCGA-L4-A4E5-01 3 164905988 164905988 G T SLITRK3 Silent p.G877G 0.38 TCGA-L4-A4E5-01 3 165548395 165548395 C A BCHE Missense_Mutation p.G143C 0.23 deleterious(0) probably_damaging(1) TCGA-L4-A4E5-01 3 183667834 183667834 T A ABCC5 Silent p.A1008A 0.34 TCGA-L4-A4E5-01 3 194062731 194062731 G C CPN2 Missense_Mutation p.P234R 0.42 tolerated(0.07) benign(0.058) TCGA-L4-A4E5-01 3 195599255 195599255 C T TNK2 Missense_Mutation p.G511D 0.08 deleterious(0.03) probably_damaging(0.947) TCGA-L4-A4E5-01 3 39227928 39227928 A T XIRP1 Silent p.P1003P 0.34 TCGA-L4-A4E5-01 3 42835654 42835654 G A HIGD1A Missense_Mutation p.P45L 0.52 tolerated(0.06) probably_damaging(0.995) TCGA-L4-A4E5-01 3 52504893 52504893 G T NISCH Missense_Mutation p.A127S 0.35 deleterious(0.01) possibly_damaging(0.663) TCGA-L4-A4E5-01 4 100341690 100341690 C T ADH7 Missense_Mutation p.M295I 0.33 deleterious(0.04) benign(0.054) TCGA-L4-A4E5-01 4 151504028 151504028 C A MAB21L2 5'UTR 0.38 TCGA-L4-A4E5-01 4 22414882 22414882 C A GPR125 Missense_Mutation p.G719W 0.41 deleterious(0) probably_damaging(1) TCGA-L4-A4E5-01 4 70080013 70080013 G T UGT2B11 Nonsense_Mutation p.S143* 0.53 TCGA-L4-A4E5-01 4 8207411 8207411 G T SH3TC1 Intron 0.45 TCGA-L4-A4E5-01 4 88767672 88767672 C G MEPE 3'UTR 0.42 TCGA-L4-A4E5-01 5 10683654 10683654 C A DAP Missense_Mutation p.G61V 0.11 deleterious(0) possibly_damaging(0.656) TCGA-L4-A4E5-01 5 114469662 114469662 C A TRIM36 Missense_Mutation p.D477Y 0.50 tolerated(0.27) possibly_damaging(0.903) TCGA-L4-A4E5-01 5 129072919 129072919 C A ADAMTS19 3'UTR 0.40 TCGA-L4-A4E5-01 5 130775406 130775406 T A RAPGEF6 Missense_Mutation p.T1213S 0.52 tolerated_low_confidence(0.67) benign(0.002) TCGA-L4-A4E5-01 5 135382091 135382091 G T TGFBI Silent p.T122T 0.43 TCGA-L4-A4E5-01 5 135382544 135382544 T A TGFBI Missense_Mutation p.V155E 0.29 deleterious(0.03) probably_damaging(0.91) TCGA-L4-A4E5-01 5 140167622 140167622 C A PCDHA1 Silent p.R583R 0.52 TCGA-L4-A4E5-01 5 140202139 140202139 T A PCDHA5 Missense_Mutation p.V260D 0.51 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-L4-A4E5-01 5 140482468 140482468 G A PCDHB3 Silent p.L745L 0.36 TCGA-L4-A4E5-01 5 140595852 140595852 G T PCDHB13 Silent p.A719A 0.48 TCGA-L4-A4E5-01 5 140718615 140718615 C T PCDHGA2 Missense_Mutation p.A26V 0.43 tolerated_low_confidence(0.13) benign(0.022) TCGA-L4-A4E5-01 5 15928043 15928043 C A FBXL7 Missense_Mutation p.L58M 0.17 tolerated(0.12) probably_damaging(0.99) TCGA-L4-A4E5-01 5 167379631 167379631 C A TENM2 Missense_Mutation p.P251T 0.64 deleterious_low_confidence(0.01) benign(0.294) TCGA-L4-A4E5-01 5 167379632 167379632 C A TENM2 Missense_Mutation p.P251H 0.65 deleterious_low_confidence(0) benign(0.018) TCGA-L4-A4E5-01 5 169507181 169507181 T A DOCK2 Missense_Mutation p.H1727Q 0.58 tolerated_low_confidence(1) benign(0.001) TCGA-L4-A4E5-01 5 171583631 171583631 C A STK10 Silent p.L106L 0.54 TCGA-L4-A4E5-01 5 172539307 172539307 A G CREBRF Splice_Site p.X536_splice 0.61 TCGA-L4-A4E5-01 5 19544055 19544055 C A CDH18 Missense_Mutation p.G438V 0.13 deleterious(0) probably_damaging(1) TCGA-L4-A4E5-01 5 23523398 23523398 A T PRDM9 Splice_Site p.X295_splice 0.32 TCGA-L4-A4E5-01 5 36137401 36137401 C A LMBRD2 Missense_Mutation p.V171L 0.59 tolerated(0.7) benign(0.095) TCGA-L4-A4E5-01 5 38964892 38964892 A C RICTOR Splice_Site p.X467_splice 0.17 TCGA-L4-A4E5-01 5 40835308 40835308 C A RPL37 5'UTR 0.06 TCGA-L4-A4E5-01 5 41005653 41005653 C A MROH2B Missense_Mutation p.G1282C 0.11 deleterious(0.03) possibly_damaging(0.677) TCGA-L4-A4E5-01 5 45262305 45262305 C G HCN1 Silent p.V797V 0.11 TCGA-L4-A4E5-01 5 54329823 54329824 - T GZMK 3'UTR 0.23 TCGA-L4-A4E5-01 5 60369018 60369018 G T NDUFAF2 Missense_Mutation p.G65V 0.47 deleterious(0) probably_damaging(0.974) TCGA-L4-A4E5-01 5 78416283 78416283 G A BHMT Silent p.K132K 0.50 TCGA-L4-A4E5-01 6 11575731 11575731 G T TMEM170B Missense_Mutation p.W112C 0.30 deleterious(0) possibly_damaging(0.526) TCGA-L4-A4E5-01 6 123102473 123102473 G C FABP7 Intron 0.36 TCGA-L4-A4E5-01 6 129618909 129618909 G A LAMA2 Missense_Mutation p.C979Y 0.27 deleterious(0) probably_damaging(1) TCGA-L4-A4E5-01 6 138202310 138202310 A T TNFAIP3 Missense_Mutation p.M743L 0.52 tolerated(0.38) benign(0) TCGA-L4-A4E5-01 6 157522229 157522229 G T ARID1B Missense_Mutation p.V1501L 0.49 possibly_damaging(0.679) TCGA-L4-A4E5-01 6 25517621 25517621 G T LRRC16A Missense_Mutation p.D618Y 0.40 deleterious(0) probably_damaging(0.996) TCGA-L4-A4E5-01 6 25551278 25551278 G T LRRC16A Missense_Mutation p.L823F 0.41 deleterious(0) probably_damaging(0.992) TCGA-L4-A4E5-01 6 31660742 31660742 C A ABHD16A Intron 0.33 TCGA-L4-A4E5-01 6 35928624 35928624 C T SLC26A8 Missense_Mutation p.R545Q 0.24 tolerated(0.06) benign(0.41) TCGA-L4-A4E5-01 6 43608008 43608008 G T MAD2L1BP Missense_Mutation p.R220L 0.25 deleterious(0) probably_damaging(1) TCGA-L4-A4E5-01 6 54792322 54792322 C G FAM83B Missense_Mutation p.T209R 0.19 deleterious(0) probably_damaging(0.999) TCGA-L4-A4E5-01 6 56422281 56422281 C T DST Missense_Mutation p.D2203N 0.23 possibly_damaging(0.506) TCGA-L4-A4E5-01 6 62688014 62688014 C A KHDRBS2 Missense_Mutation p.R147L 0.24 tolerated(0.21) probably_damaging(0.995) TCGA-L4-A4E5-01 6 69646516 69646516 A G BAI3 Missense_Mutation p.H325R 0.24 tolerated(0.61) possibly_damaging(0.778) TCGA-L4-A4E5-01 6 7370222 7370222 T A CAGE1 Missense_Mutation p.K608I 0.40 deleterious(0) benign(0.311) TCGA-L4-A4E5-01 6 90660915 90660915 C A BACH2 Missense_Mutation p.A304S 0.51 tolerated(0.63) benign(0.021) TCGA-L4-A4E5-01 7 100373332 100373332 C T ZAN Silent p.I2022I 0.80 TCGA-L4-A4E5-01 7 100866969 100866969 G A ZNHIT1 Missense_Mutation p.E97K 0.70 tolerated(0.36) benign(0.001) TCGA-L4-A4E5-01 7 123302237 123302237 T A LMOD2 Silent p.I199I 0.53 TCGA-L4-A4E5-01 7 140287578 140287578 T A DENND2A Missense_Mutation p.K333M 0.69 deleterious(0) probably_damaging(0.967) TCGA-L4-A4E5-01 7 142008772 142008772 G T TRBV3-1 Missense_Mutation p.R82L 0.60 deleterious(0) probably_damaging(0.994) TCGA-L4-A4E5-01 7 142021135 142021135 A G TRBV5-1 Missense_Mutation p.T39A 0.16 tolerated(0.13) possibly_damaging(0.461) TCGA-L4-A4E5-01 7 142494808 142494808 G - TRBJ2-5 Frame_Shift_Del p.E3Rfs*? 0.75 TCGA-L4-A4E5-01 7 15240884 15240884 A T AGMO 3'UTR 0.28 TCGA-L4-A4E5-01 7 15599877 15599877 G T AGMO Missense_Mutation p.S49Y 0.48 tolerated(1) benign(0.092) TCGA-L4-A4E5-01 7 2987266 2987266 G A CARD11 Nonsense_Mutation p.Q55* 0.58 TCGA-L4-A4E5-01 7 34118542 34118542 G T BMPER Silent p.G384G 0.15 TCGA-L4-A4E5-01 7 38369982 38369982 G T TRGV8 Missense_Mutation p.R106S 0.24 tolerated(1) benign(0) TCGA-L4-A4E5-01 7 43484469 43484469 G C HECW1 Silent p.L566L 0.17 TCGA-L4-A4E5-01 7 44191933 44191933 G T GCK Missense_Mutation p.S101R 0.48 tolerated(0.17) benign(0.03) TCGA-L4-A4E5-01 7 45004682 45004682 C A MYO1G Silent p.R796R 0.50 TCGA-L4-A4E5-01 7 45004683 45004683 C A MYO1G Missense_Mutation p.R796L 0.51 deleterious(0.03) probably_damaging(0.994) TCGA-L4-A4E5-01 7 49977035 49977035 G T ZPBP 3'Flank 0.50 TCGA-L4-A4E5-01 7 75191385 75191385 C T HIP1 Silent p.K370K 0.64 TCGA-L4-A4E5-01 7 81381506 81381506 C T HGF Silent p.G185G 0.78 TCGA-L4-A4E5-01 7 81746469 81746469 C A CACNA2D1 Missense_Mutation p.E139D 0.69 tolerated(0.21) benign(0.005) TCGA-L4-A4E5-01 7 82583881 82583881 C A PCLO Missense_Mutation p.V2130F 0.64 unknown(0) TCGA-L4-A4E5-01 7 94058538 94058538 G T COL1A2 Missense_Mutation p.M1250I 0.81 unknown(0) TCGA-L4-A4E5-01 8 100732572 100732572 G T VPS13B Splice_Site p.X2245_splice 0.24 TCGA-L4-A4E5-01 8 103289393 103289393 C T UBR5 Missense_Mutation p.A2106T 0.27 tolerated(0.13) probably_damaging(0.914) TCGA-L4-A4E5-01 8 105456598 105456598 G T DPYS Missense_Mutation p.A224E 0.32 tolerated(1) benign(0.008) TCGA-L4-A4E5-01 8 10587895 10587895 G C SOX7 Missense_Mutation p.P17A 0.33 tolerated(0.08) benign(0.002) TCGA-L4-A4E5-01 8 110631194 110631194 C A SYBU Missense_Mutation p.G102C 0.31 deleterious(0.01) probably_damaging(0.957) TCGA-L4-A4E5-01 8 120581547 120581547 G T ENPP2 Missense_Mutation p.P713T 0.27 tolerated(0.21) benign(0.034) TCGA-L4-A4E5-01 8 139165293 139165293 T G FAM135B Missense_Mutation p.E475D 0.28 tolerated(0.15) benign(0.004) TCGA-L4-A4E5-01 8 144940912 144940912 T C EPPK1 Silent p.K2170K 0.21 TCGA-L4-A4E5-01 8 145625643 145625643 G A CPSF1 Missense_Mutation p.S285L 0.31 deleterious(0) probably_damaging(0.961) TCGA-L4-A4E5-01 8 24771353 24771353 G T NEFM Missense_Mutation p.R16L 0.55 deleterious(0.04) unknown(0) TCGA-L4-A4E5-01 8 3063026 3063026 C G CSMD1 Missense_Mutation p.V1662L 0.50 probably_damaging(0.974) TCGA-L4-A4E5-01 8 51465633 51465633 C A SNTG1 Missense_Mutation p.A235D 0.26 deleterious(0) probably_damaging(0.992) TCGA-L4-A4E5-01 8 52321303 52321303 C A PXDNL Missense_Mutation p.A961S 0.33 tolerated(0.06) possibly_damaging(0.865) TCGA-L4-A4E5-01 8 53085061 53085061 A T ST18 Silent p.S120S 0.06 TCGA-L4-A4E5-01 8 69129848 69129848 C T PREX2 Intron 0.22 TCGA-L4-A4E5-01 8 76476336 76476336 G A HNF4G 3'UTR 0.15 TCGA-L4-A4E5-01 8 77763349 77763349 C A ZFHX4 Missense_Mutation p.R1398S 0.54 possibly_damaging(0.555) TCGA-L4-A4E5-01 8 77763469 77763469 C G ZFHX4 Missense_Mutation p.Q1438E 0.58 benign(0.092) TCGA-L4-A4E5-01 8 87229853 87229853 A G SLC7A13 Missense_Mutation p.L342P 0.51 deleterious(0.04) probably_damaging(0.98) TCGA-L4-A4E5-01 8 88885795 88885795 C A DCAF4L2 Silent p.L135L 0.27 TCGA-L4-A4E5-01 8 88885796 88885796 A G DCAF4L2 Missense_Mutation p.L135P 0.27 deleterious(0.01) probably_damaging(0.984) TCGA-L4-A4E5-01 8 89180161 89180161 C A MMP16 Missense_Mutation p.R149L 0.33 tolerated(0.41) benign(0.411) TCGA-L4-A4E5-01 8 89209503 89209503 C A MMP16 Silent p.P55P 0.32 TCGA-L4-A4E5-01 8 92090845 92090845 G A OTUD6B Missense_Mutation p.D223N 0.23 deleterious(0.03) possibly_damaging(0.781) TCGA-L4-A4E5-01 9 114176891 114176891 C A KIAA0368 Missense_Mutation p.G780V 0.26 deleterious(0) probably_damaging(0.991) TCGA-L4-A4E5-01 9 133901747 133901747 G A LAMC3 Missense_Mutation p.R150H 0.06 deleterious(0) probably_damaging(1) TCGA-L4-A4E5-01 9 139272416 139272416 C A SNAPC4 Missense_Mutation p.G1288V 0.29 deleterious(0) probably_damaging(0.999) TCGA-L4-A4E5-01 9 139911033 139911033 C - ABCA2 Frame_Shift_Del p.R973Afs*36 0.19 TCGA-L4-A4E5-01 9 15695284 15695284 G T CCDC171 Nonsense_Mutation p.E423* 0.28 TCGA-L4-A4E5-01 9 21481770 21481770 G T IFNE 5'UTR 0.28 TCGA-L4-A4E5-01 9 3288187 3288187 C A RFX3 Silent p.L265L 0.33 TCGA-L4-A4E5-01 9 33264433 33264433 C A BAG1 Silent p.S80S 0.35 TCGA-L4-A4E5-01 9 34557624 34557624 G T CNTFR Nonsense_Mutation p.Y168* 0.42 TCGA-L4-A4E5-01 9 43626729 43626729 T A SPATA31A6 Missense_Mutation p.Q653L 0.54 deleterious(0) probably_damaging(0.969) TCGA-L4-A4E5-01 9 6328608 6328608 A C TPD52L3 Silent p.R5R 0.30 TCGA-L4-A4E5-01 9 6620184 6620184 C A GLDC Missense_Mutation p.W157L 0.23 deleterious(0) possibly_damaging(0.527) TCGA-L4-A4E5-01 9 80869758 80869758 G T CEP78 Missense_Mutation p.G421C 0.38 deleterious(0.05) possibly_damaging(0.708) TCGA-L4-A4E5-01 9 8331608 8331608 T G PTPRD Missense_Mutation p.Q1836H 0.30 deleterious(0) probably_damaging(0.993) TCGA-L4-A4E5-01 9 85637336 85637336 T A RASEF Missense_Mutation p.Q195L 0.33 deleterious(0) probably_damaging(0.996) TCGA-L4-A4E5-01 9 86900992 86900992 C T SLC28A3 Missense_Mutation p.G439R 0.31 deleterious(0) probably_damaging(0.999) TCGA-L4-A4E5-01 9 95077288 95077288 C T NOL8 Missense_Mutation p.R540H 0.22 tolerated(0.56) benign(0) TCGA-L4-A4E5-01 9 95993313 95993313 G T WNK2 Missense_Mutation p.G333V 0.32 unknown(0) TCGA-L4-A4E5-01 X 100912701 100912701 C A ARMCX2 Intron 0.33 TCGA-L4-A4E5-01 X 10106817 10106817 G T WWC3 Silent p.A975A 0.27 TCGA-L4-A4E5-01 X 101971025 101971025 G C GPRASP2 Missense_Mutation p.E410Q 0.22 tolerated(0.36) benign(0.104) TCGA-L4-A4E5-01 X 102338170 102338170 G T NXF3 Missense_Mutation p.P191H 0.29 deleterious(0) probably_damaging(1) TCGA-L4-A4E5-01 X 103359390 103359390 C A ZCCHC18 Silent p.L196L 0.19 TCGA-L4-A4E5-01 X 105142675 105142675 G A NRK Missense_Mutation p.D227N 0.24 deleterious(0.02) possibly_damaging(0.504) TCGA-L4-A4E5-01 X 112021793 112021793 G A AMOT 3'UTR 0.25 TCGA-L4-A4E5-01 X 117033102 117033102 A T KLHL13 Missense_Mutation p.D582E 0.30 tolerated(1) benign(0.178) TCGA-L4-A4E5-01 X 117960206 117960206 G T ZCCHC12 Silent p.G333G 0.26 TCGA-L4-A4E5-01 X 123164822 123164822 A T STAG2 Missense_Mutation p.K45N 0.24 tolerated(0.13) possibly_damaging(0.787) TCGA-L4-A4E5-01 X 129190077 129190077 G T BCORL1 Missense_Mutation p.G1701V 0.34 probably_damaging(1) TCGA-L4-A4E5-01 X 129518896 129518896 G T GPR119 Missense_Mutation p.P176T 0.25 deleterious(0) probably_damaging(0.98) TCGA-L4-A4E5-01 X 129629924 129629924 C T RP1-274L7.1 Intron 0.31 TCGA-L4-A4E5-01 X 129630185 129630185 C A RP1-274L7.1 Intron 0.28 TCGA-L4-A4E5-01 X 130215823 130215823 A T ARHGAP36 Nonsense_Mutation p.K62* 0.31 TCGA-L4-A4E5-01 X 130217867 130217867 G T ARHGAP36 Missense_Mutation p.G160V 0.22 tolerated(0.07) possibly_damaging(0.901) TCGA-L4-A4E5-01 X 130419787 130419787 C A IGSF1 Missense_Mutation p.E111D 0.30 tolerated(0.42) possibly_damaging(0.749) TCGA-L4-A4E5-01 X 132473342 132473342 C A GPC4 Missense_Mutation p.G63V 0.28 deleterious(0) possibly_damaging(0.475) TCGA-L4-A4E5-01 X 134994106 134994106 G - SAGE1 Frame_Shift_Del p.Q840Kfs*17 0.23 TCGA-L4-A4E5-01 X 135122279 135122279 C A SLC9A6 Missense_Mutation p.T591K 0.39 tolerated(0.18) benign(0.197) TCGA-L4-A4E5-01 X 135432101 135432101 G T GPR112 Missense_Mutation p.G2079V 0.31 tolerated(0.11) benign(0.005) TCGA-L4-A4E5-01 X 144337400 144337400 A G SPANXN1 3'UTR 0.31 TCGA-L4-A4E5-01 X 147007065 147007065 C A FMR1 Missense_Mutation p.P38T 0.24 deleterious(0) benign(0.009) TCGA-L4-A4E5-01 X 149014068 149014068 G T MAGEA8 3'UTR 0.21 TCGA-L4-A4E5-01 X 151284180 151284180 G T RP11-1007I13.4 RNA 0.40 TCGA-L4-A4E5-01 X 153005660 153005660 C T ABCD1 Missense_Mutation p.P535S 0.20 tolerated(0.27) benign(0.014) TCGA-L4-A4E5-01 X 153073937 153073937 C A PDZD4 Silent p.G58G 0.24 TCGA-L4-A4E5-01 X 153996933 153996933 A T DKC1 Intron 0.26 TCGA-L4-A4E5-01 X 17743770 17743770 G T NHS Missense_Mutation p.G494V 0.40 tolerated(0.24) possibly_damaging(0.462) TCGA-L4-A4E5-01 X 20043802 20043802 C A MAP7D2 Missense_Mutation p.A426S 0.53 tolerated(0.41) benign(0.277) TCGA-L4-A4E5-01 X 22266064 22266064 C G PHEX Silent p.L748L 0.39 TCGA-L4-A4E5-01 X 48933296 48933296 G T WDR45 Silent p.S212S 0.19 TCGA-L4-A4E5-01 X 49597220 49597220 C A PAGE4 Missense_Mutation p.P87T 0.34 tolerated(0.05) probably_damaging(0.999) TCGA-L4-A4E5-01 X 54957025 54957025 G T TRO Missense_Mutation p.G1290C 0.24 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-L4-A4E5-01 X 62857995 62857995 C A ARHGEF9 Missense_Mutation p.Q488H 0.29 deleterious_low_confidence(0.01) probably_damaging(0.971) TCGA-L4-A4E5-01 X 64722693 64722693 C T ZC3H12B Silent p.S705S 0.21 TCGA-L4-A4E5-01 X 66765344 66765344 C A AR Missense_Mutation p.P119Q 0.25 tolerated_low_confidence(1) benign(0) TCGA-L4-A4E5-01 X 71915557 71915557 C - PHKA1 Splice_Site p.X152_splice 0.21 TCGA-L4-A4E5-01 X 77245205 77245205 C A ATP7A Missense_Mutation p.L363I 0.30 tolerated(0.34) benign(0.004) TCGA-L4-A4E5-01 X 77289215 77289216 AT - ATP7A Frame_Shift_Del p.I1137Rfs*4 0.22 TCGA-L4-A4E5-01 X 78011549 78011549 T A LPAR4 3'UTR 0.21 TCGA-L4-A4E5-01 X 80370643 80370643 T A HMGN5 Silent p.A118A 0.36 TCGA-L4-A4E5-01 X 84525058 84525058 G A ZNF711 Silent p.Q338Q 0.23 TCGA-L4-A4E5-01 X 85211189 85211189 C A CHM Missense_Mutation p.G379C 0.36 deleterious(0) probably_damaging(1) TCGA-L4-A4E6-01 11 134238566 134238566 G T GLB1L2 Silent p.V306V 0.07 TCGA-L4-A4E6-01 14 61858001 61858001 C A PRKCH Missense_Mutation p.T141N 0.14 tolerated(0.44) possibly_damaging(0.709) TCGA-L4-A4E6-01 16 4935331 4935331 C G PPL Missense_Mutation p.E1109Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-L4-A4E6-01 19 55143042 55143042 G A LILRB1 Silent p.E54E 0.05 TCGA-L4-A4E6-01 19 56296933 56296933 C T NLRP11 3'UTR 0.21 TCGA-L4-A4E6-01 19 56704080 56704080 G T ZSCAN5B Missense_Mutation p.D114E 0.05 tolerated(0.36) benign(0.083) TCGA-L4-A4E6-01 1 152648902 152648902 C G LCE2C 3'UTR 0.09 TCGA-L4-A4E6-01 22 17450878 17450878 C A GAB4 Missense_Mutation p.G298C 0.04 deleterious(0.01) benign(0.238) TCGA-L4-A4E6-01 2 103063627 103063627 G T IL18RAP Silent p.L390L 0.04 TCGA-L4-A4E6-01 2 211532996 211532996 G C CPS1 Silent p.L1369L 0.05 TCGA-L4-A4E6-01 2 233785120 233785120 C A NGEF Missense_Mutation p.K234N 0.04 tolerated(0.3) benign(0.103) TCGA-L4-A4E6-01 5 140580953 140580953 C G PCDHB11 Missense_Mutation p.R536G 0.06 tolerated_low_confidence(0.3) benign(0.01) TCGA-L4-A4E6-01 7 100680859 100680859 G T MUC17 Silent p.T2054T 0.03 TCGA-L4-A4E6-01 7 140453124 140453124 C A BRAF Missense_Mutation p.W604L 0.09 deleterious(0) probably_damaging(0.932) TCGA-L4-A4E6-01 7 27194807 27194807 C G HOXA7 Silent p.T138T 0.06 TCGA-L4-A4E6-01 8 27779483 27779483 G A SCARA5 Missense_Mutation p.T174M 0.29 deleterious(0.03) benign(0.008) TCGA-L4-A4E6-01 9 26842344 26842344 C G CAAP1 Silent p.A347A 0.06 TCGA-L4-A4E6-01 X 110495622 110495622 G A CAPN6 Silent p.Y204Y 0.12 TCGA-L4-A4E6-01 X 151869808 151869808 G C MAGEA6 Silent p.L166L 0.07 TCGA-L4-A4E6-01 X 53106254 53106254 T C GPR173 Missense_Mutation p.S151P 0.11 deleterious(0.01) probably_damaging(0.988) TCGA-L9-A443-01 10 28905236 28905236 G T WAC Missense_Mutation p.S564I 0.40 deleterious(0) benign(0.089) TCGA-L9-A443-01 10 436800 436800 C A DIP2C Missense_Mutation p.A422S 0.14 tolerated(0.11) probably_damaging(0.999) TCGA-L9-A443-01 10 50396340 50396340 C A C10orf128 Silent p.L14L 0.28 TCGA-L9-A443-01 10 64159576 64159576 C A ZNF365 Intron 0.30 TCGA-L9-A443-01 10 78651374 78651374 C T KCNMA1 Missense_Mutation p.G1067D 0.51 tolerated(0.13) probably_damaging(0.961) TCGA-L9-A443-01 10 79556322 79556322 T A DLG5 Missense_Mutation p.Q1732L 0.51 deleterious(0.03) probably_damaging(0.978) TCGA-L9-A443-01 10 89504897 89504898 - C PAPSS2 Frame_Shift_Ins p.G546Wfs*26 0.43 TCGA-L9-A443-01 11 108203580 108203580 A G ATM Missense_Mutation p.Y2627C 0.55 deleterious(0) probably_damaging(0.995) TCGA-L9-A443-01 11 108380319 108380319 G T EXPH5 Missense_Mutation p.T1972K 0.53 deleterious(0) probably_damaging(0.999) TCGA-L9-A443-01 11 1157905 1157906 - C MUC5AC Frame_Shift_Ins p.Q326Pfs*7 0.10 TCGA-L9-A443-01 11 120707502 120707502 A C GRIK4 Silent p.A231A 0.47 TCGA-L9-A443-01 11 28090905 28090905 C A KIF18A Missense_Mutation p.R497S 0.31 deleterious(0) benign(0.013) TCGA-L9-A443-01 11 28090906 28090906 C A KIF18A Missense_Mutation p.R497M 0.30 deleterious(0.04) benign(0.312) TCGA-L9-A443-01 11 30033789 30033789 T C KCNA4 Missense_Mutation p.D146G 0.12 deleterious(0.04) benign(0.272) TCGA-L9-A443-01 11 55579745 55579745 G C OR5L1 Missense_Mutation p.G268A 0.42 tolerated(0.74) benign(0.002) TCGA-L9-A443-01 11 56230535 56230535 C A OR5M9 Missense_Mutation p.V115L 0.13 tolerated(0.09) benign(0.011) TCGA-L9-A443-01 11 59377944 59377944 G A OSBP Silent p.L161L 0.26 TCGA-L9-A443-01 11 60229804 60229804 C T MS4A1 5'UTR 0.20 TCGA-L9-A443-01 11 6647467 6647467 C T DCHS1 Missense_Mutation p.R2170H 0.27 deleterious(0) probably_damaging(0.978) TCGA-L9-A443-01 11 67400442 67400442 C G TBX10 Missense_Mutation p.V228L 0.11 deleterious(0) probably_damaging(0.998) TCGA-L9-A443-01 11 8248528 8248528 T C LMO1 Missense_Mutation p.N120S 0.14 tolerated(0.13) benign(0.054) TCGA-L9-A443-01 11 88301038 88301038 G T GRM5 Missense_Mutation p.R605S 0.38 tolerated(0.05) possibly_damaging(0.737) TCGA-L9-A443-01 11 94040649 94040649 C A FOLR4 Missense_Mutation p.P175T 0.30 deleterious(0) probably_damaging(0.959) TCGA-L9-A443-01 12 105198958 105198958 C A SLC41A2 Missense_Mutation p.G565V 0.25 deleterious(0) probably_damaging(0.994) TCGA-L9-A443-01 12 108634153 108634153 G A WSCD2 Missense_Mutation p.G393R 0.09 tolerated(0.45) probably_damaging(0.986) TCGA-L9-A443-01 12 121775093 121775093 C A ANAPC5 Splice_Site p.X253_splice 0.13 TCGA-L9-A443-01 12 13102545 13102545 G C GPRC5D Missense_Mutation p.I258M 0.29 deleterious(0.05) probably_damaging(0.963) TCGA-L9-A443-01 12 13906594 13906594 G A GRIN2B Missense_Mutation p.L223F 0.24 tolerated(0.06) probably_damaging(0.999) TCGA-L9-A443-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.19 deleterious(0) possibly_damaging(0.479) TCGA-L9-A443-01 12 39726892 39726892 C - KIF21A Frame_Shift_Del p.Q836Kfs*2 0.33 TCGA-L9-A443-01 12 4430393 4430393 G C C12orf5 5'UTR 0.30 TCGA-L9-A443-01 12 4737285 4737285 A T AKAP3 Missense_Mutation p.F261L 0.14 tolerated(1) benign(0.002) TCGA-L9-A443-01 12 4874713 4874713 G T GALNT8 Splice_Site p.X587_splice 0.21 TCGA-L9-A443-01 12 52200137 52200137 C A SCN8A Missense_Mutation p.R1623S 0.27 deleterious(0) probably_damaging(0.961) TCGA-L9-A443-01 12 52284948 52284948 G C ANKRD33 Missense_Mutation p.K406N 0.29 deleterious(0) probably_damaging(0.997) TCGA-L9-A443-01 12 52284949 52284949 G T ANKRD33 Missense_Mutation p.A407S 0.29 deleterious(0.05) possibly_damaging(0.782) TCGA-L9-A443-01 12 52967355 52967355 C A KRT74 Silent p.R69R 0.23 TCGA-L9-A443-01 12 54797467 54797467 G T ITGA5 Missense_Mutation p.T573N 0.16 tolerated(1) possibly_damaging(0.757) TCGA-L9-A443-01 12 67696279 67696279 G C CAND1 Missense_Mutation p.D393H 0.32 deleterious(0) probably_damaging(0.999) TCGA-L9-A443-01 12 70070785 70070785 G T BEST3 Missense_Mutation p.P260T 0.43 tolerated(0.1) benign(0.366) TCGA-L9-A443-01 13 115089293 115089293 G T CHAMP1 5'UTR 0.27 TCGA-L9-A443-01 13 53418661 53418661 G T PCDH8 3'UTR 0.28 TCGA-L9-A443-01 13 72147052 72147052 G T DACH1 Missense_Mutation p.H409N 0.18 possibly_damaging(0.79) TCGA-L9-A443-01 13 72147053 72147053 G T DACH1 Missense_Mutation p.N408K 0.18 possibly_damaging(0.804) TCGA-L9-A443-01 13 78493488 78493488 G T EDNRB Intron 0.24 TCGA-L9-A443-01 13 78493763 78493763 A G EDNRB 5'UTR 0.21 TCGA-L9-A443-01 14 106478380 106478380 C G IGHV4-4 Silent p.S26S 0.43 TCGA-L9-A443-01 14 20528829 20528829 C T OR4L1 Missense_Mutation p.T209I 0.13 tolerated(0.98) benign(0.002) TCGA-L9-A443-01 14 30107998 30107998 G T PRKD1 Missense_Mutation p.P270Q 0.41 deleterious(0) probably_damaging(0.997) TCGA-L9-A443-01 14 47566206 47566206 G T MDGA2 Missense_Mutation p.S349Y 0.15 tolerated(0.84) possibly_damaging(0.861) TCGA-L9-A443-01 14 65199616 65199616 T C PLEKHG3 Missense_Mutation p.S392P 0.30 deleterious(0) possibly_damaging(0.882) TCGA-L9-A443-01 14 72921267 72921267 C A RGS6 Missense_Mutation p.N72K 0.21 deleterious(0.02) benign(0.314) TCGA-L9-A443-01 14 76150070 76150070 A C TTLL5 Intron 0.17 TCGA-L9-A443-01 14 89038545 89038545 A C ZC3H14 Missense_Mutation p.Q136P 0.40 tolerated(0.18) possibly_damaging(0.522) TCGA-L9-A443-01 14 90509526 90509526 G T TDP1 3'UTR 0.55 TCGA-L9-A443-01 14 95053977 95053977 A T SERPINA5 Missense_Mutation p.E93V 0.21 deleterious(0.01) benign(0.067) TCGA-L9-A443-01 15 24922699 24922699 C T NPAP1 Missense_Mutation p.S562F 0.19 tolerated(0.17) probably_damaging(0.982) TCGA-L9-A443-01 15 48725070 48725070 C A FBN1 Missense_Mutation p.M2244I 0.48 probably_damaging(0.989) TCGA-L9-A443-01 15 78526712 78526712 C A ACSBG1 Splice_Site p.X44_splice 0.40 TCGA-L9-A443-01 15 89870430 89870430 G A POLG Silent p.A467A 0.11 TCGA-L9-A443-01 16 249126 249126 C A LUC7L Missense_Mutation p.D208Y 0.32 deleterious(0) probably_damaging(1) TCGA-L9-A443-01 16 30536894 30536894 G T ZNF768 Silent p.S189S 0.15 TCGA-L9-A443-01 16 3333778 3333778 G T ZNF263 5'UTR 0.10 TCGA-L9-A443-01 16 47684469 47684469 C T PHKB Silent p.F604F 0.13 TCGA-L9-A443-01 16 55862803 55862803 G T CES1 Missense_Mutation p.Q46K 0.16 tolerated(0.36) benign(0.003) TCGA-L9-A443-01 16 67220492 67220492 C T EXOC3L1 Missense_Mutation p.M451I 0.48 deleterious(0) possibly_damaging(0.752) TCGA-L9-A443-01 16 69988469 69988469 A G CLEC18A Missense_Mutation p.Y150C 0.41 deleterious(0) probably_damaging(0.995) TCGA-L9-A443-01 16 71220769 71220769 C A HYDIN Missense_Mutation p.M10I 0.34 benign(0.052) TCGA-L9-A443-01 16 76495878 76495878 G T CNTNAP4 Missense_Mutation p.W380C 0.20 deleterious(0) probably_damaging(1) TCGA-L9-A443-01 16 81927378 81927378 A T PLCG2 Missense_Mutation p.M351L 0.21 tolerated(0.17) benign(0) TCGA-L9-A443-01 17 2091701 2091701 G A SMG6 Missense_Mutation p.S993F 0.19 tolerated(0.71) benign(0.37) TCGA-L9-A443-01 17 27240038 27240038 T C PHF12 Silent p.L517L 0.35 TCGA-L9-A443-01 17 3593973 3593973 T C P2RX5 Missense_Mutation p.N121S 0.36 tolerated(1) benign(0.002) TCGA-L9-A443-01 17 41898399 41898399 T C MPP3 Missense_Mutation p.N238D 0.29 tolerated(0.62) benign(0.005) TCGA-L9-A443-01 17 42992694 42992694 A T GFAP Missense_Mutation p.L54Q 0.17 tolerated(0.38) possibly_damaging(0.894) TCGA-L9-A443-01 17 49708815 49708815 G A CA10 3'UTR 0.13 TCGA-L9-A443-01 17 5436228 5436228 C T NLRP1 Silent p.T1070T 0.26 TCGA-L9-A443-01 17 55917207 55917207 T G MRPS23 Missense_Mutation p.E170D 0.45 tolerated(0.15) benign(0.006) TCGA-L9-A443-01 17 74721564 74721564 C A JMJD6 Missense_Mutation p.R168L 0.22 deleterious(0.04) benign(0.137) TCGA-L9-A443-01 17 78328116 78328116 C T RNF213 Intron 0.09 TCGA-L9-A443-01 18 29511436 29511436 T A TRAPPC8 Missense_Mutation p.I70L 0.21 tolerated(0.14) benign(0.02) TCGA-L9-A443-01 18 29511437 29511437 C A TRAPPC8 Missense_Mutation p.K69N 0.21 deleterious(0) benign(0.058) TCGA-L9-A443-01 18 52928721 52928721 A T TCF4 Missense_Mutation p.D424E 0.13 deleterious(0) probably_damaging(0.991) TCGA-L9-A443-01 18 59206296 59206296 A T CDH20 Missense_Mutation p.K483I 0.24 deleterious(0) possibly_damaging(0.7) TCGA-L9-A443-01 19 1632117 1632117 T C TCF3 Splice_Site p.X74_splice 0.43 TCGA-L9-A443-01 19 36041962 36041962 G C ATP4A Missense_Mutation p.F979L 0.24 tolerated(0.16) benign(0.013) TCGA-L9-A443-01 19 37676536 37676536 C A ZNF585B Missense_Mutation p.V635L 0.18 tolerated(0.06) possibly_damaging(0.729) TCGA-L9-A443-01 19 38160106 38160106 A T ZNF781 Missense_Mutation p.V315D 0.28 deleterious(0.01) benign(0.004) TCGA-L9-A443-01 19 40710420 40710421 - C MAP3K10 Frame_Shift_Ins p.E300Gfs*6 0.20 TCGA-L9-A443-01 19 43411986 43411986 T C PSG6 Missense_Mutation p.I243V 0.28 deleterious(0.05) benign(0.381) TCGA-L9-A443-01 19 47524369 47524369 C A NPAS1 Missense_Mutation p.A22D 0.31 deleterious_low_confidence(0.01) benign(0.05) TCGA-L9-A443-01 19 49934366 49934366 C A SLC17A7 Missense_Mutation p.R432L 0.27 deleterious(0.01) benign(0.142) TCGA-L9-A443-01 19 51526438 51526438 C A KLK11 Missense_Mutation p.E202D 0.19 tolerated(0.46) benign(0.01) TCGA-L9-A443-01 19 51628573 51628574 GG - SIGLEC9 Frame_Shift_Del p.G115Efs*16 0.20 TCGA-L9-A443-01 19 52568955 52568955 T C ZNF841 Missense_Mutation p.H727R 0.36 deleterious(0) probably_damaging(0.995) TCGA-L9-A443-01 19 54307321 54307321 C A NLRP12 Missense_Mutation p.G824C 0.25 deleterious(0.02) benign(0.006) TCGA-L9-A443-01 19 9525380 9525380 C A ZNF266 Missense_Mutation p.G74V 0.46 deleterious(0.01) benign(0.112) TCGA-L9-A443-01 1 1146903 1146903 C T TNFRSF4 3'UTR 0.30 TCGA-L9-A443-01 1 12835281 12835281 C A PRAMEF12 Missense_Mutation p.Q91K 0.39 deleterious(0.01) possibly_damaging(0.828) TCGA-L9-A443-01 1 151149016 151149026 AGGCAAAGATC - VPS72 3'UTR 0.34 TCGA-L9-A443-01 1 152283723 152283723 G T FLG Silent p.S1213S 0.14 TCGA-L9-A443-01 1 158911890 158911890 C A PYHIN1 Missense_Mutation p.Q235K 0.37 tolerated(1) benign(0.005) TCGA-L9-A443-01 1 159922325 159922325 C G SLAMF9 Splice_Site p.X131_splice 0.07 TCGA-L9-A443-01 1 161641217 161641217 C T FCGR2B Nonsense_Mutation p.Q57* 0.21 TCGA-L9-A443-01 1 165370478 165370478 G T RXRG 3'UTR 0.54 TCGA-L9-A443-01 1 165872427 165872427 G T UCK2 Missense_Mutation p.D170Y 0.46 deleterious(0.01) probably_damaging(0.998) TCGA-L9-A443-01 1 170964581 170964581 G T MROH9 Missense_Mutation p.V416L 0.58 deleterious(0.03) probably_damaging(0.944) TCGA-L9-A443-01 1 173019957 173019957 C T TNFSF18 Nonsense_Mutation p.W49* 0.22 TCGA-L9-A443-01 1 185992264 185992264 C T HMCN1 Missense_Mutation p.H1910Y 0.14 benign(0.317) TCGA-L9-A443-01 1 192545425 192545425 A T RGS1 Missense_Mutation p.M50L 0.09 tolerated(1) benign(0) TCGA-L9-A443-01 1 19610499 19610499 T A AKR7A3 Silent p.S275S 0.35 TCGA-L9-A443-01 1 196887426 196887426 G T CFHR4 Missense_Mutation p.G542W 0.54 deleterious(0) probably_damaging(0.999) TCGA-L9-A443-01 1 200377053 200377053 T A ZNF281 Missense_Mutation p.K594I 0.08 deleterious(0) probably_damaging(0.997) TCGA-L9-A443-01 1 202462265 202462265 A C PPP1R12B Missense_Mutation p.Q655H 0.08 deleterious(0.04) probably_damaging(0.989) TCGA-L9-A443-01 1 204924075 204924075 C T NFASC Silent p.S177S 0.47 TCGA-L9-A443-01 1 208225697 208225697 C A PLXNA2 Missense_Mutation p.G990C 0.16 deleterious(0) probably_damaging(0.999) TCGA-L9-A443-01 1 20879578 20879578 C A FAM43B Missense_Mutation p.R38S 0.27 deleterious(0) probably_damaging(0.927) TCGA-L9-A443-01 1 216051189 216051189 T C USH2A Silent p.P2864P 0.06 TCGA-L9-A443-01 1 226340303 226340303 C T ACBD3 Missense_Mutation p.A370T 0.09 tolerated(0.19) benign(0.076) TCGA-L9-A443-01 1 23418465 23418465 C A LUZP1 Missense_Mutation p.D764Y 0.14 deleterious(0) probably_damaging(0.991) TCGA-L9-A443-01 1 236384262 236384262 G A ERO1LB Nonsense_Mutation p.Q405* 0.12 TCGA-L9-A443-01 1 236647706 236647706 A T EDARADD 3'Flank 0.16 TCGA-L9-A443-01 1 236849906 236849906 C T ACTN2 5'UTR 0.22 TCGA-L9-A443-01 1 237947215 237947215 C A RYR2 Missense_Mutation p.S4068Y 0.64 probably_damaging(0.998) TCGA-L9-A443-01 1 2418735 2418735 T A PLCH2 Missense_Mutation p.L318H 0.12 deleterious(0) probably_damaging(1) TCGA-L9-A443-01 1 244218469 244218469 C A ZBTB18 Missense_Mutation p.H465N 0.12 deleterious(0) probably_damaging(0.987) TCGA-L9-A443-01 1 24465126 24465126 C T IL22RA1 Nonsense_Mutation p.W41* 0.23 TCGA-L9-A443-01 1 247712356 247712356 A T GCSAML 5'Flank 0.25 TCGA-L9-A443-01 1 247769094 247769094 G T OR2G3 Silent p.L69L 0.27 TCGA-L9-A443-01 1 247769095 247769095 G T OR2G3 Missense_Mutation p.D70Y 0.27 deleterious(0.01) possibly_damaging(0.557) TCGA-L9-A443-01 1 35227626 35227626 G A GJB4 Silent p.S257S 0.35 TCGA-L9-A443-01 1 41228590 41228590 G C NFYC Missense_Mutation p.G198R 0.09 tolerated(0.05) benign(0.053) TCGA-L9-A443-01 1 52442607 52442607 C A RAB3B Silent p.V61V 0.18 TCGA-L9-A443-01 1 6208916 6208916 T C CHD5 Missense_Mutation p.T461A 0.34 tolerated(0.07) benign(0.159) TCGA-L9-A443-01 1 62747267 62747267 C T KANK4 5'UTR 0.22 TCGA-L9-A443-01 1 63005563 63005563 C A DOCK7 Missense_Mutation p.V985L 0.30 deleterious(0.01) benign(0.272) TCGA-L9-A443-01 1 67236111 67236111 G A TCTEX1D1 Missense_Mutation p.R54H 0.20 tolerated(0.99) benign(0.001) TCGA-L9-A443-01 1 78098492 78098492 C T ZZZ3 Missense_Mutation p.S183N 0.13 tolerated(0.32) benign(0.001) TCGA-L9-A443-01 1 84880578 84880578 C A DNASE2B 3'UTR 0.24 TCGA-L9-A443-01 20 23016434 23016434 C A SSTR4 Nonsense_Mutation p.S105* 0.31 TCGA-L9-A443-01 20 3003399 3003399 G T PTPRA Nonsense_Mutation p.E465* 0.25 TCGA-L9-A443-01 20 55748120 55748120 G A BMP7 Intron 0.23 TCGA-L9-A443-01 20 60735004 60735004 C A SS18L1 Missense_Mutation p.S73Y 0.28 deleterious(0) probably_damaging(0.961) TCGA-L9-A443-01 20 62038704 62038704 C G KCNQ2 Missense_Mutation p.D638H 0.30 deleterious(0) probably_damaging(0.997) TCGA-L9-A443-01 20 7866452 7866452 G A HAO1 Silent p.D291D 0.25 TCGA-L9-A443-01 21 32253299 32253299 G A KRTAP11-1 3'UTR 0.20 TCGA-L9-A443-01 21 32496962 32496962 C T TIAM1 Missense_Mutation p.R1395H 0.15 deleterious(0) possibly_damaging(0.894) TCGA-L9-A443-01 22 30951465 30951465 C G GAL3ST1 Silent p.V249V 0.35 TCGA-L9-A443-01 22 31484882 31484882 A T SMTN Missense_Mutation p.Y133F 0.28 tolerated(0.44) benign(0.101) TCGA-L9-A443-01 22 37319310 37319310 G T CSF2RB Missense_Mutation p.R34L 0.40 deleterious(0.02) benign(0.063) TCGA-L9-A443-01 22 50167894 50167894 C A BRD1 Missense_Mutation p.S1055I 0.18 deleterious_low_confidence(0) benign(0.421) TCGA-L9-A443-01 2 102000099 102000099 C G CREG2 Silent p.G169G 0.35 TCGA-L9-A443-01 2 103095306 103095306 C G SLC9A4 Missense_Mutation p.L89V 0.32 tolerated(0.32) benign(0.211) TCGA-L9-A443-01 2 103321036 103321036 G T SLC9A2 Missense_Mutation p.D627Y 0.11 deleterious(0) possibly_damaging(0.854) TCGA-L9-A443-01 2 131521603 131521603 G T AMER3 Missense_Mutation p.C653F 0.11 tolerated(0.17) benign(0.312) TCGA-L9-A443-01 2 131985953 131985953 G T POTEE Missense_Mutation p.V352L 0.16 tolerated_low_confidence(0.25) benign(0.058) TCGA-L9-A443-01 2 133403566 133403566 G T LYPD1 3'UTR 0.19 TCGA-L9-A443-01 2 133403567 133403567 G T LYPD1 3'UTR 0.19 TCGA-L9-A443-01 2 141751626 141751626 C G LRP1B Missense_Mutation p.R861P 0.23 probably_damaging(0.944) TCGA-L9-A443-01 2 163124717 163124717 T C IFIH1 Missense_Mutation p.Y896C 0.15 tolerated(0.21) benign(0.006) TCGA-L9-A443-01 2 165802156 165802156 C T SLC38A11 Missense_Mutation p.G48D 0.09 deleterious(0) probably_damaging(0.998) TCGA-L9-A443-01 2 167168069 167168069 A T SCN9A Silent p.I66I 0.12 TCGA-L9-A443-01 2 167760210 167760210 C A XIRP2 Nonsense_Mutation p.S73* 0.26 TCGA-L9-A443-01 2 186689171 186689171 G A FSIP2 Missense_Mutation p.D6902N 0.19 benign(0.359) TCGA-L9-A443-01 2 200193506 200193506 T A SATB2 Missense_Mutation p.Q434L 0.11 deleterious(0.02) possibly_damaging(0.534) TCGA-L9-A443-01 2 208994226 208994226 G T CRYGC Missense_Mutation p.P64H 0.17 deleterious(0) probably_damaging(0.967) TCGA-L9-A443-01 2 209010608 209010608 G T CRYGB Missense_Mutation p.R48S 0.24 deleterious(0.01) possibly_damaging(0.783) TCGA-L9-A443-01 2 220379832 220379832 G T ASIC4 Missense_Mutation p.S256I 0.35 deleterious(0) probably_damaging(0.917) TCGA-L9-A443-01 2 230650530 230650530 A C TRIP12 Silent p.S1604S 0.17 TCGA-L9-A443-01 2 233410439 233410439 C T CHRNG 3'UTR 0.39 TCGA-L9-A443-01 2 26683860 26683860 C A OTOF Missense_Mutation p.A1858S 0.30 tolerated(0.05) benign(0.064) TCGA-L9-A443-01 2 27601842 27601842 C T ZNF513 Silent p.A97A 0.16 TCGA-L9-A443-01 2 32640656 32640656 T G BIRC6 Missense_Mutation p.L766W 0.16 probably_damaging(0.993) TCGA-L9-A443-01 2 45169292 45169292 C A SIX3 Missense_Mutation p.P17T 0.43 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-L9-A443-01 2 50699546 50699546 G A NRXN1 Missense_Mutation p.A1085V 0.18 deleterious(0) possibly_damaging(0.696) TCGA-L9-A443-01 2 63220752 63220752 G A EHBP1 Missense_Mutation p.V1012I 0.43 tolerated(0.07) benign(0.027) TCGA-L9-A443-01 2 69271933 69271933 T A ANTXR1 Missense_Mutation p.L95Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-L9-A443-01 2 71825792 71825792 G T DYSF Nonsense_Mutation p.E1225* 0.10 TCGA-L9-A443-01 2 77746950 77746950 C A LRRTM4 Silent p.V15V 0.29 TCGA-L9-A443-01 2 85097793 85097793 C G TRABD2A Missense_Mutation p.K75N 0.43 deleterious(0) probably_damaging(0.999) TCGA-L9-A443-01 2 86968121 86968121 G C RMND5A Missense_Mutation p.V72L 0.23 tolerated(0.24) benign(0.02) TCGA-L9-A443-01 2 99651799 99651799 G T TSGA10 Missense_Mutation p.S503Y 0.34 deleterious(0.03) probably_damaging(0.98) TCGA-L9-A443-01 3 10157374 10157374 C T BRK1 5'UTR 0.26 TCGA-L9-A443-01 3 164716431 164716431 C G SI Silent p.G1479G 0.27 TCGA-L9-A443-01 3 164906344 164906344 G T SLITRK3 Missense_Mutation p.R759S 0.28 deleterious(0.02) benign(0.204) TCGA-L9-A443-01 3 165547681 165547681 C G BCHE Missense_Mutation p.G381R 0.44 deleterious(0) possibly_damaging(0.871) TCGA-L9-A443-01 3 171410234 171410234 T G PLD1 Splice_Site p.X410_splice 0.09 TCGA-L9-A443-01 3 179439297 179439297 G T USP13 Silent p.T336T 0.34 TCGA-L9-A443-01 3 18436366 18436366 T C SATB1 Missense_Mutation p.N265S 0.30 tolerated(0.43) benign(0.061) TCGA-L9-A443-01 3 21467117 21467117 G T ZNF385D Missense_Mutation p.T240N 0.40 tolerated(0.08) benign(0.054) TCGA-L9-A443-01 3 36587858 36587858 A G STAC 3'UTR 0.32 TCGA-L9-A443-01 3 370039 370039 T A CHL1 Splice_Site p.X129_splice 0.31 TCGA-L9-A443-01 3 40574037 40574037 G T ZNF621 Missense_Mutation p.G259V 0.16 deleterious(0) probably_damaging(0.944) TCGA-L9-A443-01 3 49692502 49692502 G T BSN Missense_Mutation p.G1838V 0.26 unknown(0) TCGA-L9-A443-01 3 52360261 52360261 A G DNAH1 Missense_Mutation p.Y171C 0.33 possibly_damaging(0.447) TCGA-L9-A443-01 3 87017773 87017773 C G VGLL3 Missense_Mutation p.V302L 0.27 tolerated(0.43) benign(0.073) TCGA-L9-A443-01 3 97596606 97596606 G T CRYBG3 Missense_Mutation p.V242F 0.14 tolerated(0.5) benign(0) TCGA-L9-A443-01 4 104059534 104059534 G T CENPE Missense_Mutation p.L2093M 0.14 benign(0.215) TCGA-L9-A443-01 4 123227198 123227198 G C KIAA1109 Missense_Mutation p.R3280T 0.10 possibly_damaging(0.882) TCGA-L9-A443-01 4 145061890 145061890 G T GYPA 5'UTR 0.53 TCGA-L9-A443-01 4 145061891 145061891 G T GYPA 5'UTR 0.53 TCGA-L9-A443-01 4 162307071 162307071 C A FSTL5 Missense_Mutation p.W791L 0.27 deleterious(0.02) possibly_damaging(0.842) TCGA-L9-A443-01 4 175598277 175598277 C G GLRA3 Silent p.V293V 0.27 TCGA-L9-A443-01 4 183658210 183658210 G T TENM3 Missense_Mutation p.G1073C 0.28 deleterious(0) probably_damaging(0.979) TCGA-L9-A443-01 4 52861217 52861217 T C LRRC66 Silent p.P657P 0.17 TCGA-L9-A443-01 4 5332966 5332966 G T STK32B Nonsense_Mutation p.E94* 0.37 TCGA-L9-A443-01 4 55133531 55133531 G T PDGFRA Nonsense_Mutation p.E279* 0.31 TCGA-L9-A443-01 4 69512854 69512854 C A UGT2B15 Missense_Mutation p.A521S 0.29 tolerated(0.14) benign(0.388) TCGA-L9-A443-01 4 70355157 70355157 C A UGT2B4 Missense_Mutation p.K334N 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-L9-A443-01 4 70504927 70504927 C T UGT2A2 Silent p.L144L 0.25 TCGA-L9-A443-01 4 74315176 74315176 G A AFP Missense_Mutation p.D395N 0.13 tolerated(0.64) benign(0.048) TCGA-L9-A443-01 4 88901228 88901228 A T SPP1 Missense_Mutation p.T42S 0.39 tolerated(0.5) possibly_damaging(0.621) TCGA-L9-A443-01 5 110730481 110730481 G T CAMK4 Splice_Site p.X153_splice 0.15 TCGA-L9-A443-01 5 118969670 118969670 A T FAM170A Missense_Mutation p.H76L 0.15 tolerated(0.13) benign(0.022) TCGA-L9-A443-01 5 121786712 121786712 C A SNCAIP Missense_Mutation p.H724N 0.13 tolerated(0.07) probably_damaging(0.993) TCGA-L9-A443-01 5 127595101 127595101 G T FBN2 3'UTR 0.13 TCGA-L9-A443-01 5 127800598 127800598 C A FBN2 Silent p.P215P 0.40 TCGA-L9-A443-01 5 131347271 131347271 C G ACSL6 5'UTR 0.77 TCGA-L9-A443-01 5 140235972 140235972 G C PCDHA10 Silent p.L113L 0.32 TCGA-L9-A443-01 5 140730454 140730454 G A PCDHGB1 Silent p.L209L 0.19 TCGA-L9-A443-01 5 143853639 143853640 CC - KCTD16 Frame_Shift_Del p.P417Lfs*4 0.24 TCGA-L9-A443-01 5 149602583 149602583 G T CAMK2A Missense_Mutation p.H479N 0.11 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-L9-A443-01 5 156186328 156186328 C A SGCD Missense_Mutation p.A267D 0.15 deleterious(0.01) benign(0.017) TCGA-L9-A443-01 5 156592686 156592686 A C FAM71B Missense_Mutation p.F165C 0.40 deleterious(0) probably_damaging(1) TCGA-L9-A443-01 5 157075727 157075727 T A SOX30 Missense_Mutation p.Q382L 0.37 deleterious(0) probably_damaging(0.999) TCGA-L9-A443-01 5 160063281 160063281 G A ATP10B Missense_Mutation p.P346S 0.12 tolerated(0.05) probably_damaging(1) TCGA-L9-A443-01 5 167851021 167851021 G - WWC1 Frame_Shift_Del p.E587Kfs*19 0.10 TCGA-L9-A443-01 5 21760768 21760768 C A CDH12 Missense_Mutation p.S511I 0.15 deleterious(0) possibly_damaging(0.903) TCGA-L9-A443-01 5 26890660 26890660 G T CDH9 Silent p.R423R 0.16 TCGA-L9-A443-01 5 33459816 33459816 G T TARS Missense_Mutation p.R400I 0.21 deleterious(0) probably_damaging(0.982) TCGA-L9-A443-01 5 36118015 36118015 C A LMBRD2 Missense_Mutation p.W375L 0.13 deleterious(0) probably_damaging(1) TCGA-L9-A443-01 5 41382113 41382113 C G PLCXD3 Silent p.G209G 0.32 TCGA-L9-A443-01 5 42695111 42695111 C A GHR Missense_Mutation p.S120Y 0.29 deleterious(0.01) probably_damaging(1) TCGA-L9-A443-01 5 50683527 50683527 T G ISL1 Missense_Mutation p.L141R 0.34 tolerated(0.33) benign(0.005) TCGA-L9-A443-01 5 55212517 55212517 G C IL31RA Missense_Mutation p.D622H 0.11 deleterious(0) possibly_damaging(0.734) TCGA-L9-A443-01 5 70308532 70308532 C A NAIP Nonsense_Mutation p.E71* 0.39 TCGA-L9-A443-01 5 83362356 83362356 C A EDIL3 Nonsense_Mutation p.E241* 0.24 TCGA-L9-A443-01 5 92923651 92923651 C A NR2F1 Silent p.T164T 0.12 TCGA-L9-A443-01 5 92923652 92923652 C A NR2F1 Missense_Mutation p.Q165K 0.12 tolerated(0.06) benign(0.022) TCGA-L9-A443-01 6 105219114 105219114 G C HACE1 Missense_Mutation p.P722R 0.09 deleterious(0.02) possibly_damaging(0.475) TCGA-L9-A443-01 6 107100091 107100091 G T QRSL1 Nonsense_Mutation p.G189* 0.14 TCGA-L9-A443-01 6 107100092 107100092 G T QRSL1 Missense_Mutation p.G189V 0.14 deleterious(0) probably_damaging(0.994) TCGA-L9-A443-01 6 112462121 112462125 CACCC ACCA LAMA4 Splice_Site p.X938_splice 0.14 TCGA-L9-A443-01 6 126329582 126329582 G T TRMT11 Missense_Mutation p.G242W 0.13 deleterious(0) probably_damaging(1) TCGA-L9-A443-01 6 135778818 135778818 C A AHI1 Missense_Mutation p.G322V 0.26 tolerated(0.1) probably_damaging(1) TCGA-L9-A443-01 6 152642485 152642485 T C SYNE1 Missense_Mutation p.E5375G 0.17 probably_damaging(0.998) TCGA-L9-A443-01 6 152737745 152737745 C A SYNE1 Nonsense_Mutation p.E1943* 0.24 TCGA-L9-A443-01 6 158507977 158507977 A G SYNJ2 Missense_Mutation p.N1100S 0.18 tolerated_low_confidence(0.58) benign(0.005) TCGA-L9-A443-01 6 160200815 160200815 C A TCP1 Missense_Mutation p.R433L 0.21 deleterious(0) probably_damaging(0.938) TCGA-L9-A443-01 6 26225792 26225792 G T HIST1H3E Nonstop_Mutation p.*137Lext*? 0.18 TCGA-L9-A443-01 6 32165128 32165128 C A NOTCH4 Missense_Mutation p.G1667V 0.14 deleterious(0) probably_damaging(1) TCGA-L9-A443-01 6 41738548 41738548 G A FRS3 Missense_Mutation p.P430S 0.27 tolerated(0.84) benign(0.001) TCGA-L9-A443-01 6 43273467 43273467 G T CRIP3 3'UTR 0.20 TCGA-L9-A443-01 6 47847287 47847287 T A PTCHD4 Missense_Mutation p.Q431H 0.12 tolerated(0.13) possibly_damaging(0.483) TCGA-L9-A443-01 6 52053904 52053904 C A IL17A Nonsense_Mutation p.C94* 0.20 TCGA-L9-A443-01 6 52053905 52053905 C A IL17A Missense_Mutation p.R95S 0.20 tolerated(0.07) benign(0.041) TCGA-L9-A443-01 6 55223780 55223780 G T GFRAL Missense_Mutation p.D266Y 0.06 deleterious(0) probably_damaging(0.997) TCGA-L9-A443-01 6 66204600 66204600 C A EYS Missense_Mutation p.W235L 0.38 tolerated_low_confidence(0.27) benign(0.111) TCGA-L9-A443-01 7 107323961 107323961 T C SLC26A4 Missense_Mutation p.I327T 0.44 tolerated(0.07) possibly_damaging(0.679) TCGA-L9-A443-01 7 107688373 107688373 C A LAMB4 Missense_Mutation p.V1436F 0.23 tolerated(0.15) benign(0.008) TCGA-L9-A443-01 7 107688374 107688374 C A LAMB4 Missense_Mutation p.Q1435H 0.22 tolerated(0.08) benign(0.038) TCGA-L9-A443-01 7 116960734 116960734 C A WNT2 Missense_Mutation p.S66I 0.23 deleterious(0) benign(0.378) TCGA-L9-A443-01 7 120770246 120770246 T C CPED1 Missense_Mutation p.V492A 0.19 deleterious(0.03) benign(0.016) TCGA-L9-A443-01 7 126173493 126173493 C A GRM8 Missense_Mutation p.C648F 0.15 deleterious(0) probably_damaging(0.999) TCGA-L9-A443-01 7 15405784 15405784 C G AGMO Missense_Mutation p.G380R 0.16 deleterious(0) probably_damaging(0.997) TCGA-L9-A443-01 7 19765250 19765250 C A TMEM196 Missense_Mutation p.G116W 0.25 deleterious_low_confidence(0.02) probably_damaging(0.992) TCGA-L9-A443-01 7 20698852 20698852 G C ABCB5 Intron 0.21 TCGA-L9-A443-01 7 31682808 31682808 G T CCDC129 Missense_Mutation p.K634N 0.35 tolerated(0.21) benign(0.014) TCGA-L9-A443-01 7 39491135 39491135 C T POU6F2 Missense_Mutation p.H413Y 0.12 tolerated(1) unknown(0) TCGA-L9-A443-01 7 44097413 44097414 TG - DBNL Frame_Shift_Del p.E170Dfs*2 0.10 TCGA-L9-A443-01 7 44151646 44151646 G C AEBP1 Missense_Mutation p.Q678H 0.10 deleterious(0.02) possibly_damaging(0.673) TCGA-L9-A443-01 7 48392059 48392059 C A ABCA13 Missense_Mutation p.P3555T 0.53 probably_damaging(0.999) TCGA-L9-A443-01 7 50057837 50057837 T A ZPBP Missense_Mutation p.K261M 0.11 deleterious(0) probably_damaging(1) TCGA-L9-A443-01 7 5983602 5983603 AG - RSPH10B Frame_Shift_Del p.F517Lfs*25 0.20 TCGA-L9-A443-01 7 6820456 6820457 CT - RSPH10B2 Frame_Shift_Del p.F517Lfs*25 0.09 TCGA-L9-A443-01 7 75630223 75630223 G A STYXL1 Silent p.N265N 0.05 TCGA-L9-A443-01 7 82578939 82578939 T A PCLO Missense_Mutation p.K3655N 0.21 unknown(0) TCGA-L9-A443-01 7 99526821 99526821 C T GJC3 Silent p.L141L 0.09 TCGA-L9-A443-01 8 10480516 10480516 C A RP1L1 Missense_Mutation p.D66Y 0.19 probably_damaging(1) TCGA-L9-A443-01 8 113293413 113293413 A T CSMD3 Silent p.P3166P 0.06 TCGA-L9-A443-01 8 113293414 113293414 G T CSMD3 Missense_Mutation p.P3166H 0.06 deleterious(0) benign(0.226) TCGA-L9-A443-01 8 119391764 119391764 C T SAMD12 Silent p.G166G 0.11 TCGA-L9-A443-01 8 120079600 120079600 G T COLEC10 Missense_Mutation p.G27V 0.15 tolerated(0.6) benign(0.12) TCGA-L9-A443-01 8 145584054 145584054 C T SLC52A2 Missense_Mutation p.S301F 0.26 deleterious(0) probably_damaging(0.998) TCGA-L9-A443-01 8 36788575 36788575 C T KCNU1 Missense_Mutation p.A948V 0.38 deleterious(0.05) benign(0.003) TCGA-L9-A443-01 8 65494345 65494345 C T BHLHE22 Missense_Mutation p.A333V 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.806) TCGA-L9-A443-01 8 72958760 72958760 A T TRPA1 Silent p.L683L 0.11 TCGA-L9-A443-01 8 72987703 72987703 G A TRPA1 5'UTR 0.20 TCGA-L9-A443-01 8 77764394 77764394 C A ZFHX4 Missense_Mutation p.T1746K 0.16 benign(0.005) TCGA-L9-A443-01 8 95186111 95186111 T C CDH17 Missense_Mutation p.I233V 0.28 tolerated(0.35) benign(0.002) TCGA-L9-A443-01 9 104335536 104335536 G T GRIN3A Missense_Mutation p.R1090S 0.16 deleterious(0) benign(0.09) TCGA-L9-A443-01 9 106877102 106877102 G A SMC2 Missense_Mutation p.D555N 0.21 deleterious(0.02) probably_damaging(0.979) TCGA-L9-A443-01 9 111673441 111673441 G T IKBKAP Silent p.V403V 0.45 TCGA-L9-A443-01 9 111911937 111911937 C T FRRS1L Missense_Mutation p.G152E 0.14 deleterious(0.01) possibly_damaging(0.892) TCGA-L9-A443-01 9 125330011 125330011 A G OR1L8 Missense_Mutation p.V249A 0.27 deleterious(0) probably_damaging(0.982) TCGA-L9-A443-01 9 133914556 133914556 G T LAMC3 Missense_Mutation p.A402S 0.34 tolerated(0.86) benign(0.026) TCGA-L9-A443-01 9 134165561 134165561 A G PPAPDC3 Silent p.R59R 0.19 TCGA-L9-A443-01 9 134463356 134463356 C G RAPGEF1 Silent p.L869L 0.27 TCGA-L9-A443-01 9 139090759 139090759 C A LHX3 Missense_Mutation p.V206L 0.50 deleterious(0.05) benign(0.248) TCGA-L9-A443-01 9 140952683 140952683 G C CACNA1B Missense_Mutation p.C1430S 0.14 tolerated(0.06) possibly_damaging(0.684) TCGA-L9-A443-01 9 16419245 16419245 G A BNC2 Silent p.S1014S 0.39 TCGA-L9-A443-01 9 21217275 21217275 G T IFNA16 Silent p.A10A 0.43 TCGA-L9-A443-01 9 21217276 21217276 G T IFNA16 Missense_Mutation p.A10D 0.41 deleterious(0) possibly_damaging(0.594) TCGA-L9-A443-01 9 96305727 96305727 C T FAM120A Silent p.H711H 0.39 TCGA-L9-A443-01 X 100608946 100608946 T A BTK Silent p.S554S 0.52 TCGA-L9-A443-01 X 103042762 103042762 G T PLP1 Missense_Mutation p.W163C 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-L9-A443-01 X 12627909 12627909 T A FRMPD4 Silent p.P76P 0.60 TCGA-L9-A443-01 X 127186073 127186073 A G ACTRT1 Missense_Mutation p.V38A 0.23 deleterious(0.02) benign(0.043) TCGA-L9-A443-01 X 142717414 142717414 C A SLITRK4 Missense_Mutation p.R504M 0.47 deleterious(0) benign(0.34) TCGA-L9-A443-01 X 150912485 150912485 G A CNGA2 Missense_Mutation p.D504N 0.52 deleterious(0) probably_damaging(0.957) TCGA-L9-A443-01 X 152853661 152853661 C A FAM58A 3'UTR 0.35 TCGA-L9-A443-01 X 18265997 18265997 C G SCML2 Missense_Mutation p.E488Q 0.18 tolerated(0.09) benign(0.035) TCGA-L9-A443-01 X 23876836 23876836 T A APOO Nonsense_Mutation p.K135* 0.22 TCGA-L9-A443-01 X 34962455 34962455 G T FAM47B Nonsense_Mutation p.E503* 0.19 TCGA-L9-A443-01 X 39931977 39931977 T A BCOR Silent p.P874P 0.16 TCGA-L9-A443-01 X 40999908 40999908 G C USP9X Splice_Site p.X219_splice 0.26 TCGA-L9-A443-01 X 73047050 73047050 C A XIST RNA 0.41 TCGA-L9-A443-01 X 91133758 91133758 C A PCDH11X Missense_Mutation p.P840Q 0.22 tolerated(0.11) probably_damaging(0.985) TCGA-L9-A443-01 X 91133759 91133759 A C PCDH11X Silent p.P840P 0.22 TCGA-L9-A444-01 10 103988198 103988198 G C ELOVL3 Missense_Mutation p.W86C 0.34 tolerated(0.09) probably_damaging(1) TCGA-L9-A444-01 10 1088655 1088655 C A IDI1 Nonsense_Mutation p.E152* 0.12 TCGA-L9-A444-01 10 123274745 123274745 C A FGFR2 Missense_Mutation p.M392I 0.41 tolerated(0.13) probably_damaging(0.98) TCGA-L9-A444-01 10 124358347 124358347 G T DMBT1 Missense_Mutation p.R1005L 0.14 deleterious(0) probably_damaging(0.974) TCGA-L9-A444-01 10 125769613 125769613 C A CHST15 3'UTR 0.25 TCGA-L9-A444-01 10 128974598 128974598 G T FAM196A Missense_Mutation p.A21D 0.31 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 10 15089284 15089284 C - OLAH 5'UTR 0.27 TCGA-L9-A444-01 10 16918960 16918960 C A CUBN Silent p.L3014L 0.23 TCGA-L9-A444-01 10 24783426 24783426 C T KIAA1217 Intron 0.12 TCGA-L9-A444-01 10 24884657 24884657 A G ARHGAP21 Missense_Mutation p.L1234P 0.09 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 10 26513546 26513546 G T GAD2 Missense_Mutation p.W230C 0.22 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 10 27512357 27512357 C T ACBD5 Missense_Mutation p.E134K 0.42 deleterious(0.03) possibly_damaging(0.69) TCGA-L9-A444-01 10 38344949 38344949 G - ZNF33A Frame_Shift_Del p.E634Rfs*19 0.24 TCGA-L9-A444-01 10 55566664 55566664 C A PCDH15 Missense_Mutation p.G1574V 0.37 deleterious_low_confidence(0) benign(0.013) TCGA-L9-A444-01 10 55566665 55566665 C A PCDH15 Missense_Mutation p.G1574W 0.38 deleterious_low_confidence(0) benign(0.198) TCGA-L9-A444-01 10 55755349 55755349 A G PCDH15 Intron 0.47 TCGA-L9-A444-01 10 5956210 5956210 G T FBXO18 Silent p.V509V 0.24 TCGA-L9-A444-01 10 5978452 5978452 G A FBXO18 Missense_Mutation p.V1006I 0.15 tolerated(0.17) benign(0.087) TCGA-L9-A444-01 10 60037063 60037063 G T CISD1 Missense_Mutation p.R73L 0.23 deleterious(0) probably_damaging(0.92) TCGA-L9-A444-01 10 81317071 81317071 C A SFTPA2 Missense_Mutation p.G214V 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-L9-A444-01 10 81929007 81929007 G A ANXA11 Silent p.P93P 0.33 TCGA-L9-A444-01 10 85973030 85973030 G T CDHR1 Missense_Mutation p.V656L 0.34 deleterious(0.02) possibly_damaging(0.841) TCGA-L9-A444-01 10 89120742 89120742 G T NUTM2D Missense_Mutation p.G224V 0.29 tolerated(0.29) probably_damaging(0.921) TCGA-L9-A444-01 10 89536108 89536108 C A ATAD1 Missense_Mutation p.W220C 0.22 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 10 92508918 92508918 C G HTR7 Missense_Mutation p.A325P 0.41 deleterious(0) probably_damaging(0.998) TCGA-L9-A444-01 10 93256105 93256105 G T HECTD2 Silent p.V552V 0.28 TCGA-L9-A444-01 11 101342867 101342867 C T TRPC6 Splice_Site p.X735_splice 0.24 TCGA-L9-A444-01 11 117389430 117389430 G C DSCAML1 Missense_Mutation p.P481A 0.10 tolerated(0.12) probably_damaging(0.916) TCGA-L9-A444-01 11 117860281 117860281 G T IL10RA Missense_Mutation p.G105C 0.33 deleterious(0) probably_damaging(0.997) TCGA-L9-A444-01 11 117860282 117860282 G T IL10RA Missense_Mutation p.G105V 0.34 deleterious(0) probably_damaging(0.978) TCGA-L9-A444-01 11 124766467 124766467 G A ROBO4 Missense_Mutation p.P167L 0.26 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 11 124793266 124793266 G T HEPACAM Missense_Mutation p.T258K 0.20 deleterious(0) possibly_damaging(0.827) TCGA-L9-A444-01 11 1266117 1266117 G A MUC5B Silent p.V2669V 0.18 TCGA-L9-A444-01 11 1298461 1298461 G A TOLLIP Silent p.P211P 0.21 TCGA-L9-A444-01 11 14808074 14808074 C T PDE3B Missense_Mutation p.P374L 0.20 deleterious(0.03) benign(0.32) TCGA-L9-A444-01 11 22380974 22380974 C A SLC17A6 Silent p.A158A 0.13 TCGA-L9-A444-01 11 33564431 33564431 C A KIAA1549L Missense_Mutation p.A144E 0.17 deleterious_low_confidence(0.01) benign(0.005) TCGA-L9-A444-01 11 33689573 33689574 TG A KIAA1549L Frame_Shift_Del p.L1808Qfs*11 0.11 TCGA-L9-A444-01 11 40137255 40137255 C A LRRC4C Silent p.L196L 0.23 TCGA-L9-A444-01 11 4470980 4470980 C A OR52K2 Silent p.V137V 0.14 TCGA-L9-A444-01 11 4566752 4566752 C A OR52M1 Missense_Mutation p.T111N 0.13 deleterious(0.05) possibly_damaging(0.696) TCGA-L9-A444-01 11 45992814 45992814 G A PHF21A Silent p.T155T 0.14 TCGA-L9-A444-01 11 46455144 46455144 C A AMBRA1 Missense_Mutation p.M862I 0.20 deleterious(0) probably_damaging(0.964) TCGA-L9-A444-01 11 46455146 46455146 T A AMBRA1 Missense_Mutation p.M862L 0.20 tolerated(0.13) possibly_damaging(0.867) TCGA-L9-A444-01 11 55322807 55322807 T C OR4C15 Missense_Mutation p.F342S 0.12 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-L9-A444-01 11 55406028 55406028 A G OR4P4 Silent p.S65S 0.31 TCGA-L9-A444-01 11 55432657 55432657 C T OR4C6 Silent p.N5N 0.12 TCGA-L9-A444-01 11 55890462 55890462 C A OR8H3 Missense_Mutation p.S205Y 0.11 tolerated(0.68) benign(0.078) TCGA-L9-A444-01 11 55890463 55890463 C A OR8H3 Silent p.S205S 0.11 TCGA-L9-A444-01 11 55999725 55999725 C A OR5T2 Missense_Mutation p.V313L 0.18 deleterious(0.03) benign(0.232) TCGA-L9-A444-01 11 57798764 57798764 A C OR6Q1 Missense_Mutation p.T114P 0.19 deleterious(0) possibly_damaging(0.522) TCGA-L9-A444-01 11 57971640 57971640 C A OR1S2 Missense_Mutation p.C5F 0.10 tolerated_low_confidence(0.24) benign(0.008) TCGA-L9-A444-01 11 57982355 57982355 A T OR1S1 Missense_Mutation p.M47L 0.14 deleterious(0.02) benign(0.086) TCGA-L9-A444-01 11 58126223 58126223 G T OR5B17 Missense_Mutation p.T107N 0.09 deleterious_low_confidence(0.04) benign(0.154) TCGA-L9-A444-01 11 58170448 58170448 G T OR5B3 Silent p.G145G 0.26 TCGA-L9-A444-01 11 58207595 58207595 G C OR5B12 Missense_Mutation p.F10L 0.34 deleterious_low_confidence(0) possibly_damaging(0.588) TCGA-L9-A444-01 11 58979278 58979278 T C MPEG1 Missense_Mutation p.N354S 0.11 tolerated(0.43) benign(0.002) TCGA-L9-A444-01 11 59131997 59131997 C A OR5AN1 Silent p.P22P 0.14 TCGA-L9-A444-01 11 5968663 5968663 C A OR56A3 Missense_Mutation p.H29Q 0.16 tolerated(0.07) benign(0.003) TCGA-L9-A444-01 11 59861479 59861479 G C MS4A2 Missense_Mutation p.G194R 0.18 tolerated(0.14) probably_damaging(0.949) TCGA-L9-A444-01 11 59861480 59861480 G A MS4A2 Missense_Mutation p.G194D 0.19 tolerated(0.09) probably_damaging(0.926) TCGA-L9-A444-01 11 60048189 60048189 G T MS4A4A Missense_Mutation p.S14I 0.10 deleterious(0) possibly_damaging(0.864) TCGA-L9-A444-01 11 60048190 60048190 G T MS4A4A Splice_Site p.X14_splice 0.08 TCGA-L9-A444-01 11 60183160 60183160 C A MS4A14 Missense_Mutation p.S273Y 0.17 tolerated(0.08) possibly_damaging(0.504) TCGA-L9-A444-01 11 61111447 61111447 G C DAK Missense_Mutation p.G368R 0.13 tolerated(0.31) benign(0.197) TCGA-L9-A444-01 11 61120465 61120465 G A CYB561A3 Silent p.F197F 0.10 TCGA-L9-A444-01 11 64757170 64757170 T C BATF2 Missense_Mutation p.M86V 0.31 tolerated(0.69) benign(0.002) TCGA-L9-A444-01 11 66258843 66258843 G T DPP3 Nonsense_Mutation p.E263* 0.43 TCGA-L9-A444-01 11 66323691 66323691 G A CTD-3074O7.2 3'Flank 0.10 TCGA-L9-A444-01 11 66327771 66327771 G A CTSF 3'Flank 0.15 TCGA-L9-A444-01 11 66328128 66328128 G A CTSF 3'Flank 0.10 TCGA-L9-A444-01 11 66328139 66328139 G C CTSF 3'Flank 0.09 TCGA-L9-A444-01 11 67018026 67018026 C T KDM2A Missense_Mutation p.A842V 0.25 tolerated(0.62) benign(0.026) TCGA-L9-A444-01 11 69063637 69063637 C A MYEOV Missense_Mutation p.H240Q 0.34 deleterious_low_confidence(0) benign(0.006) TCGA-L9-A444-01 12 101880389 101880389 C T SPIC Missense_Mutation p.A196V 0.24 tolerated(0.4) benign(0.019) TCGA-L9-A444-01 12 10215663 10215663 G T CLEC9A Missense_Mutation p.S110I 0.07 deleterious(0.01) benign(0.013) TCGA-L9-A444-01 12 106734657 106734657 A T TCP11L2 Missense_Mutation p.E399V 0.16 deleterious(0) possibly_damaging(0.692) TCGA-L9-A444-01 12 123099538 123099538 G T KNTC1 Missense_Mutation p.A1960S 0.23 deleterious(0.01) possibly_damaging(0.5) TCGA-L9-A444-01 12 20854252 20854252 G T SLCO1C1 Missense_Mutation p.V44L 0.28 tolerated(0.29) benign(0.01) TCGA-L9-A444-01 12 21919023 21919023 A G KCNJ8 Silent p.T303T 0.28 TCGA-L9-A444-01 12 31605091 31605092 - T DENND5B Frame_Shift_Ins p.M471Nfs*9 0.15 TCGA-L9-A444-01 12 49447317 49447317 T A KMT2D Missense_Mutation p.T261S 0.27 unknown(0) TCGA-L9-A444-01 12 50452666 50452666 G C ASIC1 Silent p.L39L 0.39 TCGA-L9-A444-01 12 52788815 52788815 G T KRT82 Silent p.R496R 0.35 TCGA-L9-A444-01 12 54910681 54910681 G T NCKAP1L Missense_Mutation p.G334C 0.27 deleterious(0.04) probably_damaging(0.971) TCGA-L9-A444-01 12 62931012 62931012 C T MON2 Missense_Mutation p.P661L 0.26 tolerated(0.05) probably_damaging(0.966) TCGA-L9-A444-01 12 85277545 85277545 G T SLC6A15 Intron 0.24 TCGA-L9-A444-01 12 85460559 85460559 T G LRRIQ1 Missense_Mutation p.L860V 0.27 deleterious(0) possibly_damaging(0.837) TCGA-L9-A444-01 13 111088631 111088631 C G COL4A2 Missense_Mutation p.P248A 0.54 possibly_damaging(0.636) TCGA-L9-A444-01 13 25823505 25823505 G A MTMR6 Silent p.P577P 0.33 TCGA-L9-A444-01 13 36049334 36049334 C A MAB21L1 Silent p.R314R 0.44 TCGA-L9-A444-01 13 38156502 38156502 C T POSTN Splice_Site p.X464_splice 0.45 TCGA-L9-A444-01 13 53418798 53418798 C A PCDH8 Missense_Mutation p.R1037L 0.28 deleterious(0.01) probably_damaging(0.974) TCGA-L9-A444-01 13 53603101 53603101 T G OLFM4 Missense_Mutation p.S44A 0.29 tolerated_low_confidence(0.69) unknown(0) TCGA-L9-A444-01 13 84453978 84453978 G A SLITRK1 Silent p.D555D 0.32 TCGA-L9-A444-01 13 84454113 84454113 C T SLITRK1 Silent p.P510P 0.19 TCGA-L9-A444-01 14 105419037 105419037 G - AHNAK2 Frame_Shift_Del p.V919Wfs*18 0.25 TCGA-L9-A444-01 14 106235793 106235793 G T IGHG3 Missense_Mutation p.S305R 0.28 tolerated(0.08) possibly_damaging(0.78) TCGA-L9-A444-01 14 106926209 106926209 G T IGHV3-43 Silent p.A111A 0.05 TCGA-L9-A444-01 14 20216021 20216021 G A OR4Q3 Silent p.L145L 0.18 TCGA-L9-A444-01 14 20692418 20692418 C A OR11H6 Missense_Mutation p.L184I 0.24 deleterious(0.01) probably_damaging(1) TCGA-L9-A444-01 14 22133496 22133496 C T OR4E2 Missense_Mutation p.S67F 0.11 deleterious(0) probably_damaging(0.999) TCGA-L9-A444-01 14 22356393 22356393 G C TRAV12-2 Missense_Mutation p.W17C 0.18 tolerated(0.09) unknown(0) TCGA-L9-A444-01 14 23792683 23792683 A T PABPN1 Missense_Mutation p.H211L 0.31 deleterious(0) probably_damaging(0.998) TCGA-L9-A444-01 14 23859615 23859615 C T MYH6 Missense_Mutation p.R1128H 0.40 deleterious(0.04) probably_damaging(1) TCGA-L9-A444-01 14 23868030 23868030 C T MYH6 Missense_Mutation p.D600N 0.27 deleterious(0) possibly_damaging(0.878) TCGA-L9-A444-01 14 50626741 50626742 - A SOS2 Frame_Shift_Ins p.M420Ifs*3 0.28 TCGA-L9-A444-01 14 50802858 50802858 G T CDKL1 Intron 0.16 TCGA-L9-A444-01 14 52194666 52194666 A G FRMD6 Silent p.Q596Q 0.12 TCGA-L9-A444-01 14 52471326 52471326 G T C14orf166 3'UTR 0.20 TCGA-L9-A444-01 14 59112945 59112945 G T DACT1 Missense_Mutation p.R535M 0.06 deleterious(0) probably_damaging(0.999) TCGA-L9-A444-01 14 71502789 71502789 G C PCNX Missense_Mutation p.R1261P 0.36 tolerated(0.07) probably_damaging(0.996) TCGA-L9-A444-01 15 100672287 100672287 C A ADAMTS17 Missense_Mutation p.W549L 0.23 deleterious(0.02) benign(0.034) TCGA-L9-A444-01 15 102291824 102291824 C T DNM1P47 RNA 0.16 TCGA-L9-A444-01 15 22382918 22382918 G T OR4N4 Missense_Mutation p.W149L 0.27 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 15 42028612 42028612 G T MGA Missense_Mutation p.G1384C 0.22 deleterious(0) probably_damaging(0.995) TCGA-L9-A444-01 15 50264945 50264945 C A ATP8B4 Missense_Mutation p.W359C 0.13 deleterious(0.01) benign(0.055) TCGA-L9-A444-01 15 50264946 50264946 C A ATP8B4 Missense_Mutation p.W359L 0.13 deleterious(0.01) possibly_damaging(0.521) TCGA-L9-A444-01 15 52849298 52849298 C A ARPP19 Missense_Mutation p.G56V 0.32 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 15 54306499 54306499 G A UNC13C Missense_Mutation p.V467M 0.26 tolerated_low_confidence(0.36) benign(0.013) TCGA-L9-A444-01 15 65347491 65347491 C A RASL12 Missense_Mutation p.A183S 0.14 tolerated(0.13) benign(0.017) TCGA-L9-A444-01 15 74486213 74486213 G A STRA6 Silent p.L255L 0.12 TCGA-L9-A444-01 15 74703654 74703654 A C SEMA7A Missense_Mutation p.C541G 0.15 deleterious(0) benign(0.147) TCGA-L9-A444-01 15 75309085 75309085 C T SCAMP5 Silent p.A96A 0.27 TCGA-L9-A444-01 15 79090406 79090406 T A ADAMTS7 Missense_Mutation p.D169V 0.35 tolerated(0.05) benign(0.315) TCGA-L9-A444-01 15 85400512 85400512 C A ALPK3 Missense_Mutation p.P1050Q 0.23 deleterious_low_confidence(0.04) possibly_damaging(0.525) TCGA-L9-A444-01 16 1573549 1573549 C A IFT140 Missense_Mutation p.R1141S 0.10 deleterious(0) benign(0.103) TCGA-L9-A444-01 16 20360436 20360436 A T UMOD Missense_Mutation p.C63S 0.28 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 16 20448669 20448669 C A ACSM5 Missense_Mutation p.P506T 0.07 deleterious(0) probably_damaging(0.998) TCGA-L9-A444-01 16 20748201 20748201 C T THUMPD1 3'UTR 0.14 TCGA-L9-A444-01 16 22926438 22926438 C A HS3ST2 Missense_Mutation p.S220Y 0.15 deleterious(0) probably_damaging(0.997) TCGA-L9-A444-01 16 24919375 24919375 T C SLC5A11 Missense_Mutation p.S453P 0.08 deleterious(0) possibly_damaging(0.649) TCGA-L9-A444-01 16 25239902 25239902 A T AQP8 3'UTR 0.27 TCGA-L9-A444-01 16 2880741 2880741 C T ZG16B Silent p.D69D 0.19 TCGA-L9-A444-01 16 31072428 31072428 C A ZNF668 Silent p.L630L 0.16 TCGA-L9-A444-01 16 4910714 4910714 G - UBN1 Frame_Shift_Del p.A242Lfs*2 0.10 TCGA-L9-A444-01 16 66436602 66436602 C A CDH5 Missense_Mutation p.R629S 0.17 tolerated(0.49) benign(0.03) TCGA-L9-A444-01 16 84270899 84270899 C A KCNG4 Missense_Mutation p.V65L 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-L9-A444-01 16 87744895 87744895 G A KLHDC4 Silent p.N330N 0.12 TCGA-L9-A444-01 16 88947753 88947753 G T CBFA2T3 Missense_Mutation p.P450T 0.14 tolerated(0.09) benign(0.009) TCGA-L9-A444-01 17 10348296 10348296 G T MYH4 Silent p.A1821A 0.07 TCGA-L9-A444-01 17 10369894 10369894 C A MYH4 Missense_Mutation p.G57W 0.34 deleterious(0) possibly_damaging(0.904) TCGA-L9-A444-01 17 11572536 11572536 G T DNAH9 Missense_Mutation p.V963L 0.35 benign(0.028) TCGA-L9-A444-01 17 16612307 16612307 G T CCDC144A Silent p.P312P 0.18 TCGA-L9-A444-01 17 21319828 21319828 G A KCNJ12 Missense_Mutation p.A392T 0.09 tolerated(0.54) benign(0.008) TCGA-L9-A444-01 17 2593934 2593934 G A CLUH Missense_Mutation p.S1295F 0.56 deleterious_low_confidence(0) possibly_damaging(0.901) TCGA-L9-A444-01 17 26982419 26982419 T A SDF2 Silent p.T78T 0.35 TCGA-L9-A444-01 17 28575975 28575975 G C BLMH 3'UTR 0.16 TCGA-L9-A444-01 17 28575986 28575986 T G BLMH 3'UTR 0.09 TCGA-L9-A444-01 17 29670153 29670153 G T NF1 Missense_Mutation p.G2397W 0.25 deleterious(0) probably_damaging(0.998) TCGA-L9-A444-01 17 3195021 3195021 G T OR3A1 Missense_Mutation p.P286T 0.28 deleterious(0) probably_damaging(0.973) TCGA-L9-A444-01 17 32483142 32483142 A G ASIC2 Missense_Mutation p.L137P 0.28 tolerated(0.08) probably_damaging(1) TCGA-L9-A444-01 17 32597352 32597352 G T CCL7 Missense_Mutation p.A15S 0.19 deleterious(0.04) possibly_damaging(0.739) TCGA-L9-A444-01 17 33330164 33330164 G - LIG3 Intron 0.36 TCGA-L9-A444-01 17 33513459 33513459 G T UNC45B Nonsense_Mutation p.E893* 0.32 TCGA-L9-A444-01 17 36499155 36499155 G T GPR179 Missense_Mutation p.T173N 0.09 deleterious(0.01) probably_damaging(0.982) TCGA-L9-A444-01 17 37667793 37667793 C G CDK12 Missense_Mutation p.T893R 0.17 probably_damaging(0.999) TCGA-L9-A444-01 17 39182937 39182937 G T KRTAP1-5 Silent p.S157S 0.32 TCGA-L9-A444-01 17 3919740 3919740 C A ZZEF1 Missense_Mutation p.Q2674H 0.29 tolerated(0.26) benign(0.001) TCGA-L9-A444-01 17 42255693 42255693 C G ASB16 Missense_Mutation p.R433G 0.16 tolerated(0.1) benign(0.094) TCGA-L9-A444-01 17 46804115 46804115 C A HOXB13 3'UTR 0.07 TCGA-L9-A444-01 17 4994981 4994981 A G ZFP3 Missense_Mutation p.Q61R 0.11 tolerated(0.47) benign(0.001) TCGA-L9-A444-01 17 51901244 51901244 G C KIF2B Missense_Mutation p.A284P 0.33 deleterious(0) probably_damaging(0.992) TCGA-L9-A444-01 17 57651101 57651101 G T DHX40 Missense_Mutation p.D183Y 0.21 deleterious(0) probably_damaging(0.994) TCGA-L9-A444-01 17 67031405 67031405 G A ABCA9 Silent p.F370F 0.19 TCGA-L9-A444-01 17 7578475 7578475 G A TP53 Missense_Mutation p.P152L 0.31 tolerated(0.08) probably_damaging(0.91) TCGA-L9-A444-01 17 79073865 79073865 G C BAIAP2 Silent p.A209A 0.16 TCGA-L9-A444-01 17 79479155 79479155 C A ACTG1 Missense_Mutation p.G46V 0.29 deleterious_low_confidence(0.01) benign(0.331) TCGA-L9-A444-01 17 80407049 80407049 C A C17orf62 Missense_Mutation p.V28F 0.38 tolerated(0.08) probably_damaging(0.917) TCGA-L9-A444-01 17 8167822 8167822 A G PFAS Missense_Mutation p.Q651R 0.18 tolerated(0.26) benign(0.001) TCGA-L9-A444-01 18 13645410 13645410 C A LDLRAD4 Missense_Mutation p.S225R 0.25 tolerated_low_confidence(0.5) benign(0.106) TCGA-L9-A444-01 18 31324530 31324530 C A ASXL3 Missense_Mutation p.T1573N 0.26 benign(0.031) TCGA-L9-A444-01 18 33048704 33048704 G A INO80C Silent p.A186A 0.19 TCGA-L9-A444-01 18 34378497 34378499 GCA CC TPGS2 Frame_Shift_Del p.Y192Ifs*52 0.16 TCGA-L9-A444-01 18 43523984 43523984 C A EPG5 Silent p.G593G 0.21 TCGA-L9-A444-01 18 43842951 43842951 G A C18orf25 Missense_Mutation p.G361D 0.12 possibly_damaging(0.86) TCGA-L9-A444-01 18 44560774 44560774 C T TCEB3B Missense_Mutation p.A288T 0.21 tolerated(0.29) benign(0.039) TCGA-L9-A444-01 18 47107849 47107849 G T LIPG Silent p.V286V 0.12 TCGA-L9-A444-01 18 47753828 47753828 C T CCDC11 Missense_Mutation p.V490I 0.26 tolerated(1) benign(0.003) TCGA-L9-A444-01 18 50432614 50432614 G T DCC Missense_Mutation p.G205W 0.16 deleterious(0.01) probably_damaging(0.938) TCGA-L9-A444-01 18 59763127 59763127 T A PIGN Missense_Mutation p.S712C 0.36 deleterious(0) probably_damaging(0.996) TCGA-L9-A444-01 18 59854909 59854909 A T KIAA1468 Silent p.P57P 0.16 TCGA-L9-A444-01 18 63548148 63548148 G T CDH7 3'UTR 0.17 TCGA-L9-A444-01 18 74620439 74620439 A T ZNF236 Missense_Mutation p.M819L 0.16 tolerated(0.29) benign(0.001) TCGA-L9-A444-01 19 12542629 12542629 A G ZNF443 Silent p.N119N 0.44 TCGA-L9-A444-01 19 15132729 15132729 C A CCDC105 Missense_Mutation p.Q417K 0.56 tolerated(0.18) probably_damaging(0.935) TCGA-L9-A444-01 19 18252756 18252756 G C MAST3 Missense_Mutation p.S728T 0.40 deleterious_low_confidence(0.04) benign(0.334) TCGA-L9-A444-01 19 23869938 23869938 G A ZNF675 5'UTR 0.38 TCGA-L9-A444-01 19 31768133 31768133 C T TSHZ3 Missense_Mutation p.E856K 0.15 tolerated(0.62) benign(0.256) TCGA-L9-A444-01 19 31768498 31768498 C A TSHZ3 Missense_Mutation p.G734V 0.35 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 19 31768499 31768499 C A TSHZ3 Missense_Mutation p.G734C 0.35 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 19 35786760 35786760 G C MAG Silent p.L97L 0.04 TCGA-L9-A444-01 19 36224535 36224535 G T KMT2B Missense_Mutation p.G2333W 0.56 probably_damaging(0.953) TCGA-L9-A444-01 19 37203335 37203335 G T ZNF567 5'UTR 0.10 TCGA-L9-A444-01 19 38104045 38104045 C G ZNF540 Missense_Mutation p.L622V 0.43 deleterious(0.01) probably_damaging(0.954) TCGA-L9-A444-01 19 40540461 40540461 C G ZNF780B Missense_Mutation p.V769L 0.21 tolerated(0.25) benign(0.417) TCGA-L9-A444-01 19 41860617 41860617 G A B9D2 Silent p.G172G 0.06 TCGA-L9-A444-01 19 41919953 41919953 G - BCKDHA Splice_Site p.X126_splice 0.22 TCGA-L9-A444-01 19 43259170 43259170 G T PSG8 Missense_Mutation p.R320S 0.27 tolerated(0.44) benign(0.026) TCGA-L9-A444-01 19 43259171 43259171 G T PSG8 Silent p.I319I 0.28 TCGA-L9-A444-01 19 43414992 43414992 G T PSG6 Missense_Mutation p.S149Y 0.05 tolerated(0.4) benign(0.016) TCGA-L9-A444-01 19 43522990 43522990 G A PSG11 Missense_Mutation p.P214L 0.04 deleterious(0.04) probably_damaging(1) TCGA-L9-A444-01 19 43708129 43708129 C T PSG4 Silent p.T113T 0.05 TCGA-L9-A444-01 19 44285125 44285125 T G KCNN4 5'UTR 0.23 TCGA-L9-A444-01 19 45818846 45818846 C T CKM Missense_Mutation p.D120N 0.36 tolerated(0.24) benign(0.009) TCGA-L9-A444-01 19 47941192 47941192 C T SLC8A2 Missense_Mutation p.A642T 0.06 tolerated(0.37) possibly_damaging(0.899) TCGA-L9-A444-01 19 48837343 48837343 C T TMEM143 Missense_Mutation p.D363N 0.38 deleterious(0.03) probably_damaging(0.956) TCGA-L9-A444-01 19 49622383 49622383 G T C19orf73 5'UTR 0.32 TCGA-L9-A444-01 19 50193062 50193062 A G ADM5 5'UTR 0.38 TCGA-L9-A444-01 19 50212075 50212075 G A CPT1C Silent p.L515L 0.21 TCGA-L9-A444-01 19 50213977 50213977 C T CPT1C Intron 0.47 TCGA-L9-A444-01 19 50804978 50804978 G T MYH14 Missense_Mutation p.G1844W 0.22 deleterious(0) probably_damaging(0.973) TCGA-L9-A444-01 19 53652569 53652569 T A ZNF347 Missense_Mutation p.T23S 0.21 deleterious(0.02) possibly_damaging(0.452) TCGA-L9-A444-01 19 53793948 53793948 G T BIRC8 5'UTR 0.40 TCGA-L9-A444-01 19 54314259 54314259 C T NLRP12 Silent p.A218A 0.35 TCGA-L9-A444-01 19 54327485 54327485 G C NLRP12 5'UTR 0.22 TCGA-L9-A444-01 19 5455880 5455880 C A ZNRF4 Silent p.P126P 0.40 TCGA-L9-A444-01 19 55284965 55284965 A C KIR2DL1 Missense_Mutation p.N84T 0.33 deleterious(0.05) probably_damaging(0.997) TCGA-L9-A444-01 19 55349260 55349260 C A KIR2DS4 Nonsense_Mutation p.C100* 0.58 TCGA-L9-A444-01 19 56244148 56244148 C A NLRP9 Missense_Mutation p.R350M 0.36 deleterious(0) possibly_damaging(0.525) TCGA-L9-A444-01 19 57286535 57286535 G T ZIM2 Missense_Mutation p.P369T 0.19 tolerated(0.11) benign(0.091) TCGA-L9-A444-01 19 57335852 57335852 C A PEG3 Missense_Mutation p.V58F 0.30 deleterious(0) probably_damaging(0.94) TCGA-L9-A444-01 19 57647455 57647455 C A ZIM3 Missense_Mutation p.G84W 0.32 tolerated(0.23) benign(0) TCGA-L9-A444-01 19 6495850 6495850 G - TUBB4A Frame_Shift_Del p.T221Pfs*13 0.12 TCGA-L9-A444-01 19 6697805 6697805 C A C3 Missense_Mutation p.G814V 0.23 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 19 8429487 8429487 G A ANGPTL4 Silent p.E94E 0.21 TCGA-L9-A444-01 19 8651345 8651345 G T ADAMTS10 Silent p.R805R 0.50 TCGA-L9-A444-01 19 9047616 9047616 C A MUC16 Nonsense_Mutation p.E11339* 0.38 TCGA-L9-A444-01 19 9048755 9048755 G A MUC16 Missense_Mutation p.P10959L 0.37 benign(0.007) TCGA-L9-A444-01 19 9072391 9072391 T G MUC16 Missense_Mutation p.M5019L 0.34 unknown(0) TCGA-L9-A444-01 1 107599901 107599901 C G PRMT6 Silent p.S188S 0.13 TCGA-L9-A444-01 1 107691370 107691370 C A NTNG1 Missense_Mutation p.P52Q 0.15 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 1 111060567 111060567 C A KCNA10 Missense_Mutation p.W281C 0.16 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 1 111147447 111147447 G T KCNA2 5'UTR 0.16 TCGA-L9-A444-01 1 111862912 111862912 A T CHIA Missense_Mutation p.S419C 0.11 deleterious(0.02) possibly_damaging(0.873) TCGA-L9-A444-01 1 11288728 11288728 C A MTOR Silent p.R1009R 0.15 TCGA-L9-A444-01 1 114511108 114511108 G T HIPK1 Missense_Mutation p.G870V 0.11 tolerated(0.27) benign(0.063) TCGA-L9-A444-01 1 115168389 115168389 C T DENND2C Missense_Mutation p.V73I 0.10 tolerated(0.42) benign(0) TCGA-L9-A444-01 1 117131613 117131613 C A IGSF3 Missense_Mutation p.V735L 0.06 deleterious(0.01) benign(0.361) TCGA-L9-A444-01 1 120438670 120438670 C G ADAM30 Missense_Mutation p.G97A 0.31 deleterious(0.01) probably_damaging(0.985) TCGA-L9-A444-01 1 13496119 13496119 T A PRAMEF16 Nonsense_Mutation p.L147* 0.25 TCGA-L9-A444-01 1 145415733 145415733 A T HFE2 Silent p.T184T 0.13 TCGA-L9-A444-01 1 145538996 145538996 G A ITGA10 Missense_Mutation p.C979Y 0.07 tolerated(0.68) probably_damaging(1) TCGA-L9-A444-01 1 1500000 1500000 C A SSU72 Intron 0.20 TCGA-L9-A444-01 1 152281399 152281399 C A FLG Missense_Mutation p.G1988V 0.08 probably_damaging(0.953) TCGA-L9-A444-01 1 152281400 152281400 C A FLG Nonsense_Mutation p.G1988* 0.08 TCGA-L9-A444-01 1 152281833 152281833 G T FLG Missense_Mutation p.H1843Q 0.04 benign(0.227) TCGA-L9-A444-01 1 152282086 152282086 G T FLG Missense_Mutation p.S1759Y 0.06 possibly_damaging(0.608) TCGA-L9-A444-01 1 152282096 152282096 C T FLG Missense_Mutation p.G1756R 0.05 probably_damaging(0.953) TCGA-L9-A444-01 1 152732729 152732729 G T KPRP Missense_Mutation p.R222L 0.09 tolerated(0.07) benign(0.006) TCGA-L9-A444-01 1 152732846 152732846 G T KPRP Missense_Mutation p.R261L 0.14 tolerated(0.1) possibly_damaging(0.569) TCGA-L9-A444-01 1 152748887 152748887 C G LCE1F Missense_Mutation p.P14A 0.08 deleterious_low_confidence(0) unknown(0) TCGA-L9-A444-01 1 152770554 152770554 C A LCE1D Missense_Mutation p.P95H 0.05 unknown(0) TCGA-L9-A444-01 1 152800040 152800040 C A LCE1A Missense_Mutation p.P31Q 0.06 tolerated_low_confidence(0.12) unknown(0) TCGA-L9-A444-01 1 153314169 153314169 C A PGLYRP4 Missense_Mutation p.V187F 0.13 tolerated(0.09) benign(0.017) TCGA-L9-A444-01 1 154229620 154229620 C - UBAP2L Frame_Shift_Del p.P748Qfs*19 0.32 TCGA-L9-A444-01 1 154247908 154247908 C T HAX1 Missense_Mutation p.R235W 0.12 deleterious(0.04) benign(0.031) TCGA-L9-A444-01 1 155904167 155904167 C A KIAA0907 5'UTR 0.17 TCGA-L9-A444-01 1 157068986 157068986 G T ETV3L Silent p.G81G 0.09 TCGA-L9-A444-01 1 158369176 158369176 C A OR10T2 Silent p.L27L 0.11 TCGA-L9-A444-01 1 160722020 160722020 T A SLAMF7 Silent p.T306T 0.30 TCGA-L9-A444-01 1 161163935 161163935 G T ADAMTS4 Missense_Mutation p.D446E 0.56 tolerated(0.06) benign(0.392) TCGA-L9-A444-01 1 165370478 165370478 G T RXRG 3'UTR 0.14 TCGA-L9-A444-01 1 166927063 166927063 C T ILDR2 Missense_Mutation p.G108S 0.30 deleterious(0) probably_damaging(0.999) TCGA-L9-A444-01 1 179013040 179013040 A T FAM20B Missense_Mutation p.T20S 0.31 tolerated_low_confidence(0.69) benign(0.039) TCGA-L9-A444-01 1 181058756 181058756 A T IER5 Nonsense_Mutation p.K240* 0.14 TCGA-L9-A444-01 1 181479635 181479635 G T CACNA1E Missense_Mutation p.A97S 0.14 deleterious(0) benign(0.364) TCGA-L9-A444-01 1 18661436 18661436 G C IGSF21 Missense_Mutation p.G119A 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-L9-A444-01 1 192548325 192548325 C A RGS1 Missense_Mutation p.P168H 0.32 tolerated(0.55) benign(0.004) TCGA-L9-A444-01 1 197069855 197069855 C A ASPM Silent p.R2842R 0.10 TCGA-L9-A444-01 1 198682201 198682201 G C PTPRC Missense_Mutation p.E431Q 0.07 tolerated(0.4) benign(0.01) TCGA-L9-A444-01 1 203188947 203188947 C A CHIT1 Missense_Mutation p.G254W 0.21 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 1 203316864 203316864 T A FMOD Nonsense_Mutation p.R179* 0.30 TCGA-L9-A444-01 1 204438804 204438804 C A PIK3C2B Missense_Mutation p.D43Y 0.20 deleterious_low_confidence(0) benign(0.235) TCGA-L9-A444-01 1 205042912 205042912 T A CNTN2 3'UTR 0.15 TCGA-L9-A444-01 1 206821128 206821128 G T DYRK3 Silent p.G195G 0.15 TCGA-L9-A444-01 1 207286463 207286463 A G C4BPA Silent p.P31P 0.21 TCGA-L9-A444-01 1 207307858 207307858 A C C4BPA Silent p.S398S 0.08 TCGA-L9-A444-01 1 213146093 213146093 G T VASH2 Silent p.R179R 0.12 TCGA-L9-A444-01 1 220835231 220835231 G A MARK1 Nonsense_Mutation p.W704* 0.12 TCGA-L9-A444-01 1 228602389 228602389 G T TRIM17 Missense_Mutation p.L129M 0.24 tolerated(0.11) benign(0.051) TCGA-L9-A444-01 1 229588299 229588299 T C NUP133 Silent p.P1024P 0.13 TCGA-L9-A444-01 1 232601163 232601163 C A SIPA1L2 Splice_Site p.X748_splice 0.30 TCGA-L9-A444-01 1 232649718 232649718 G C SIPA1L2 Silent p.S456S 0.13 TCGA-L9-A444-01 1 237947837 237947837 C A RYR2 Silent p.T4275T 0.21 TCGA-L9-A444-01 1 243327842 243327842 T G CEP170 Silent p.G1140G 0.22 TCGA-L9-A444-01 1 245704133 245704133 G T KIF26B Missense_Mutation p.A411S 0.21 tolerated(0.82) unknown(0) TCGA-L9-A444-01 1 245704134 245704134 C G KIF26B Missense_Mutation p.A411G 0.21 tolerated(0.38) unknown(0) TCGA-L9-A444-01 1 247921569 247921569 G T OR1C1 Missense_Mutation p.A47E 0.39 deleterious(0) benign(0.004) TCGA-L9-A444-01 1 248039253 248039253 C A TRIM58 Missense_Mutation p.A308D 0.15 tolerated(0.34) benign(0.02) TCGA-L9-A444-01 1 248039254 248039254 C A TRIM58 Silent p.A308A 0.14 TCGA-L9-A444-01 1 248128778 248128778 C A OR2AK2 Missense_Mutation p.L49I 0.16 tolerated(1) benign(0.014) TCGA-L9-A444-01 1 248308685 248308685 C A OR2M5 Missense_Mutation p.P79H 0.23 deleterious(0) probably_damaging(0.98) TCGA-L9-A444-01 1 248308686 248308686 C A OR2M5 Silent p.P79P 0.23 TCGA-L9-A444-01 1 248366611 248366611 T A OR2M3 Missense_Mutation p.M81K 0.27 deleterious(0) possibly_damaging(0.774) TCGA-L9-A444-01 1 248402304 248402304 C A OR2M4 Missense_Mutation p.T25N 0.20 tolerated(0.3) possibly_damaging(0.563) TCGA-L9-A444-01 1 248636963 248636963 C T OR2T3 Silent p.I104I 0.23 TCGA-L9-A444-01 1 248845238 248845238 G T OR14I1 Missense_Mutation p.A123D 0.10 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 1 35226811 35226811 C A GJB4 5'UTR 0.33 TCGA-L9-A444-01 1 36215321 36215321 C A CLSPN Missense_Mutation p.G707V 0.50 tolerated(0.07) possibly_damaging(0.568) TCGA-L9-A444-01 1 37307352 37307352 C T GRIK3 Silent p.K505K 0.07 TCGA-L9-A444-01 1 46656055 46656055 T - POMGNT1 Intron 0.31 TCGA-L9-A444-01 1 53543413 53543413 C A PODN Silent p.R313R 0.16 TCGA-L9-A444-01 1 55118765 55118765 G A MROH7 Missense_Mutation p.A56T 0.14 deleterious_low_confidence(0.01) benign(0.016) TCGA-L9-A444-01 1 6166831 6166831 G T CHD5 Missense_Mutation p.Q1863K 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-L9-A444-01 1 62739175 62739175 C T KANK4 Missense_Mutation p.G534E 0.09 tolerated(0.16) benign(0.017) TCGA-L9-A444-01 1 67142658 67142658 C A AL139147.1 Splice_Site 0.20 TCGA-L9-A444-01 1 71535040 71535040 C A ZRANB2 Missense_Mutation p.R230L 0.20 deleterious(0.04) unknown(0) TCGA-L9-A444-01 1 72400883 72400883 C G NEGR1 Missense_Mutation p.L96F 0.28 tolerated(0.12) benign(0.325) TCGA-L9-A444-01 1 75072507 75072507 C A C1orf173 Nonsense_Mutation p.E423* 0.33 TCGA-L9-A444-01 1 84880355 84880355 C A DNASE2B Missense_Mutation p.S297Y 0.32 tolerated(0.79) possibly_damaging(0.707) TCGA-L9-A444-01 1 86919102 86919102 G C CLCA2 Missense_Mutation p.E736Q 0.19 tolerated(0.86) benign(0.215) TCGA-L9-A444-01 1 90180586 90180586 A C LRRC8C 3'UTR 0.33 TCGA-L9-A444-01 1 92195393 92195393 C G TGFBR3 Missense_Mutation p.E236Q 0.13 deleterious(0.04) probably_damaging(0.933) TCGA-L9-A444-01 20 1456789 1456789 G T SIRPB2 3'UTR 0.35 TCGA-L9-A444-01 20 21687004 21687004 C A PAX1 Intron 0.27 TCGA-L9-A444-01 20 21687005 21687005 G A PAX1 Intron 0.28 TCGA-L9-A444-01 20 30064536 30064536 G T REM1 Missense_Mutation p.L96F 0.35 tolerated(0.08) probably_damaging(0.969) TCGA-L9-A444-01 20 30686860 30686860 T A HCK Missense_Mutation p.F434I 0.30 deleterious(0) probably_damaging(0.999) TCGA-L9-A444-01 20 33104243 33104243 G T DYNLRB1 5'UTR 0.30 TCGA-L9-A444-01 20 34241753 34241753 G A RBM12 Missense_Mutation p.R498C 0.05 deleterious(0.05) possibly_damaging(0.726) TCGA-L9-A444-01 20 35509091 35509091 C A TLDC2 Missense_Mutation p.L126I 0.33 tolerated(0.1) benign(0.201) TCGA-L9-A444-01 20 36932746 36932746 C A BPI Missense_Mutation p.L45M 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-L9-A444-01 20 44580851 44580851 C A ZNF335 Missense_Mutation p.A1042S 0.53 tolerated(0.3) benign(0.171) TCGA-L9-A444-01 20 52644865 52644865 G T BCAS1 Intron 0.48 TCGA-L9-A444-01 20 57036150 57036150 G T APCDD1L Missense_Mutation p.P401Q 0.43 deleterious(0.03) probably_damaging(0.983) TCGA-L9-A444-01 20 58519859 58519859 A T FAM217B Missense_Mutation p.E287D 0.43 tolerated(0.29) benign(0.027) TCGA-L9-A444-01 20 62203652 62203652 C A HELZ2 Silent p.T29T 0.73 TCGA-L9-A444-01 21 11049563 11049563 G T BAGE2 RNA 0.06 TCGA-L9-A444-01 21 11097565 11097565 G T BAGE2 RNA 0.06 TCGA-L9-A444-01 21 19685284 19685284 C A TMPRSS15 Missense_Mutation p.V715F 0.21 tolerated(0.07) possibly_damaging(0.737) TCGA-L9-A444-01 21 31538715 31538715 G T CLDN17 Missense_Mutation p.P74Q 0.23 deleterious(0) probably_damaging(0.978) TCGA-L9-A444-01 21 31654650 31654650 G T KRTAP24-1 Missense_Mutation p.Q201K 0.14 tolerated(1) benign(0.292) TCGA-L9-A444-01 21 31654781 31654781 C A KRTAP24-1 Missense_Mutation p.C157F 0.21 tolerated(0.52) probably_damaging(0.951) TCGA-L9-A444-01 21 31691807 31691807 G T KRTAP26-1 Missense_Mutation p.L183I 0.10 tolerated(0.11) possibly_damaging(0.597) TCGA-L9-A444-01 21 31691808 31691808 G T KRTAP26-1 Missense_Mutation p.S182R 0.10 tolerated(0.1) probably_damaging(0.972) TCGA-L9-A444-01 21 31709808 31709808 C G KRTAP27-1 Missense_Mutation p.C60S 0.19 tolerated(0.21) benign(0.242) TCGA-L9-A444-01 21 32185425 32185425 C T KRTAP8-1 Silent p.V38V 0.17 TCGA-L9-A444-01 21 40250739 40250739 G T AF064858.6 RNA 0.22 TCGA-L9-A444-01 21 43803252 43803252 C G TMPRSS3 Missense_Mutation p.L224F 0.09 tolerated(0.11) benign(0.353) TCGA-L9-A444-01 21 45833862 45833862 G T TRPM2 Missense_Mutation p.R1017S 0.14 tolerated(0.22) benign(0.009) TCGA-L9-A444-01 21 45999654 45999654 G A KRTAP10-5 Missense_Mutation p.R268C 0.20 deleterious(0.01) possibly_damaging(0.658) TCGA-L9-A444-01 22 30409368 30409368 G T MTMR3 Missense_Mutation p.M447I 0.37 deleterious(0.04) benign(0.403) TCGA-L9-A444-01 22 32506128 32506128 G T SLC5A1 Missense_Mutation p.W641C 0.20 deleterious(0.01) probably_damaging(0.947) TCGA-L9-A444-01 22 32843292 32843292 G A BPIFC Missense_Mutation p.S94L 0.24 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 22 39884247 39884247 G T MGAT3 Missense_Mutation p.D299Y 0.27 deleterious(0.01) benign(0.045) TCGA-L9-A444-01 22 51018794 51018794 G T CHKB Silent p.I243I 0.25 TCGA-L9-A444-01 2 10101349 10101349 G A GRHL1 Silent p.T151T 0.07 TCGA-L9-A444-01 2 105858930 105858930 C G GPR45 Missense_Mutation p.F205L 0.17 tolerated(0.06) benign(0.401) TCGA-L9-A444-01 2 107041350 107041350 C A RGPD3 Missense_Mutation p.D1025Y 0.18 deleterious(0) possibly_damaging(0.682) TCGA-L9-A444-01 2 128389184 128389184 G A MYO7B Missense_Mutation p.R1676Q 0.06 deleterious(0.02) benign(0.003) TCGA-L9-A444-01 2 128754025 128754025 C A SAP130 Silent p.R444R 0.34 TCGA-L9-A444-01 2 133541659 133541659 G T NCKAP5 Missense_Mutation p.P909T 0.34 tolerated(0.06) benign(0.026) TCGA-L9-A444-01 2 141571230 141571230 G T LRP1B Silent p.I1785I 0.29 TCGA-L9-A444-01 2 141819627 141819627 C A LRP1B Missense_Mutation p.G410V 0.12 probably_damaging(0.988) TCGA-L9-A444-01 2 152739886 152739886 T A CACNB4 Splice_Site p.X50_splice 0.21 TCGA-L9-A444-01 2 15432722 15432722 C A NBAS Missense_Mutation p.D1656Y 0.18 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 2 16082270 16082270 C T MYCN Silent p.F28F 0.05 TCGA-L9-A444-01 2 169801180 169801180 C T ABCB11 Missense_Mutation p.D849N 0.14 tolerated(0.12) benign(0.443) TCGA-L9-A444-01 2 173825957 173825957 G T RAPGEF4 Splice_Site p.X233_splice 0.27 TCGA-L9-A444-01 2 176981722 176981722 T A HOXD10 Missense_Mutation p.L54H 0.31 deleterious(0) probably_damaging(0.999) TCGA-L9-A444-01 2 189599587 189599587 C A DIRC1 Nonsense_Mutation p.G21* 0.24 TCGA-L9-A444-01 2 209200839 209200839 A T PIKFYVE Missense_Mutation p.T1479S 0.33 tolerated(1) benign(0.001) TCGA-L9-A444-01 2 211441075 211441075 C A CPS1 Missense_Mutation p.P87Q 0.18 deleterious(0) possibly_damaging(0.61) TCGA-L9-A444-01 2 212426697 212426697 C T ERBB4 Silent p.E806E 0.08 TCGA-L9-A444-01 2 220354220 220354220 C T SPEG Missense_Mutation p.P2827L 0.23 benign(0.001) TCGA-L9-A444-01 2 223168736 223168736 C T CCDC140 Nonsense_Mutation p.R39* 0.30 TCGA-L9-A444-01 2 233431561 233431561 G T EIF4E2 Missense_Mutation p.G133V 0.20 deleterious(0) probably_damaging(0.998) TCGA-L9-A444-01 2 234669220 234669220 G C UGT1A8 Intron 0.31 TCGA-L9-A444-01 2 242097241 242097241 G T PPP1R7 Silent p.V67V 0.17 TCGA-L9-A444-01 2 242594717 242594717 A T ATG4B Silent p.I139I 0.22 TCGA-L9-A444-01 2 242683209 242683209 G T D2HGDH Silent p.G221G 0.58 TCGA-L9-A444-01 2 47184002 47184002 C T TTC7A Silent p.L125L 0.27 TCGA-L9-A444-01 2 50850540 50850540 C A NRXN1 Missense_Mutation p.G382V 0.34 deleterious(0.01) probably_damaging(1) TCGA-L9-A444-01 2 69397403 69397403 C A ANTXR1 Silent p.P357P 0.23 TCGA-L9-A444-01 2 69397404 69397404 C G ANTXR1 Missense_Mutation p.P358A 0.22 deleterious(0.02) benign(0.117) TCGA-L9-A444-01 2 71192252 71192252 C G ATP6V1B1 3'UTR 0.22 TCGA-L9-A444-01 2 74808872 74808872 T G M1AP Missense_Mutation p.D233A 0.27 deleterious(0) probably_damaging(0.939) TCGA-L9-A444-01 2 75113474 75113474 G T HK2 Missense_Mutation p.M663I 0.26 tolerated(0.15) probably_damaging(0.998) TCGA-L9-A444-01 2 76975878 76975878 G T LRRTM4 Silent p.I572I 0.16 TCGA-L9-A444-01 2 80529316 80529316 G T LRRTM1 3'UTR 0.28 TCGA-L9-A444-01 2 88874587 88874587 G A EIF2AK3 Missense_Mutation p.S805L 0.31 deleterious(0) possibly_damaging(0.564) TCGA-L9-A444-01 2 89035241 89035241 A G RPIA Missense_Mutation p.I195V 0.33 tolerated(0.77) benign(0.098) TCGA-L9-A444-01 2 89292352 89292352 G C IGKV1-8 Missense_Mutation p.P16A 0.22 deleterious(0.03) benign(0.109) TCGA-L9-A444-01 2 89568218 89568218 G T IGKV1-33 Silent p.V5V 0.12 TCGA-L9-A444-01 2 89901369 89901369 G A IGKV1D-39 Missense_Mutation p.G19S 0.31 deleterious(0.05) benign(0.256) TCGA-L9-A444-01 2 90229117 90229117 C A IGKV1D-42 Missense_Mutation p.P18Q 0.17 tolerated(0.09) probably_damaging(0.912) TCGA-L9-A444-01 2 96932194 96932194 G T CIAO1 Missense_Mutation p.G36C 0.24 deleterious(0) probably_damaging(0.996) TCGA-L9-A444-01 2 98834364 98834364 C A VWA3B Missense_Mutation p.T631N 0.32 deleterious(0) probably_damaging(0.984) TCGA-L9-A444-01 3 107435617 107435617 G C BBX Missense_Mutation p.G109A 0.23 deleterious(0) benign(0.393) TCGA-L9-A444-01 3 115395237 115395237 C G GAP43 Silent p.G172G 0.11 TCGA-L9-A444-01 3 121238866 121238866 C A POLQ Missense_Mutation p.L440F 0.11 deleterious(0) possibly_damaging(0.774) TCGA-L9-A444-01 3 121341392 121341392 A T FBXO40 Silent p.P372P 0.27 TCGA-L9-A444-01 3 121720293 121720293 T A ILDR1 Missense_Mutation p.T170S 0.30 deleterious(0.02) probably_damaging(0.992) TCGA-L9-A444-01 3 122002829 122002829 G T CASR Silent p.T686T 0.08 TCGA-L9-A444-01 3 122478136 122478136 C T HSPBAP1 Silent p.L168L 0.38 TCGA-L9-A444-01 3 122964799 122964799 A T SEC22A Missense_Mutation p.S199C 0.30 deleterious(0) benign(0.036) TCGA-L9-A444-01 3 122990393 122990393 G T SEC22A Missense_Mutation p.G250C 0.16 tolerated(0.2) benign(0.017) TCGA-L9-A444-01 3 122990394 122990394 G T SEC22A Missense_Mutation p.G250V 0.17 tolerated(0.7) benign(0.001) TCGA-L9-A444-01 3 123005630 123005630 C A ADCY5 Missense_Mutation p.G1187W 0.13 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 3 125271202 125271202 T G OSBPL11 Missense_Mutation p.T493P 0.16 tolerated(0.25) benign(0.002) TCGA-L9-A444-01 3 127820453 127820453 T A RUVBL1 Silent p.R184R 0.30 TCGA-L9-A444-01 3 128181651 128181651 C T DNAJB8 Silent p.E146E 0.13 TCGA-L9-A444-01 3 128622927 128622927 C T ACAD9 Silent p.C327C 0.11 TCGA-L9-A444-01 3 147128116 147128116 G T ZIC1 Missense_Mutation p.A73S 0.26 tolerated(0.21) possibly_damaging(0.746) TCGA-L9-A444-01 3 164760960 164760960 C A SI Nonsense_Mutation p.G631* 0.17 TCGA-L9-A444-01 3 165503969 165503969 A T BCHE Missense_Mutation p.W550R 0.12 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 3 184081331 184081331 G A POLR2H Silent p.P17P 0.11 TCGA-L9-A444-01 3 186953906 186953906 G - MASP1 Frame_Shift_Del p.H585Tfs*16 0.11 TCGA-L9-A444-01 3 189711925 189711925 C A LEPREL1 Nonsense_Mutation p.E261* 0.08 TCGA-L9-A444-01 3 36899238 36899238 C A TRANK1 Missense_Mutation p.D615Y 0.14 deleterious(0) possibly_damaging(0.907) TCGA-L9-A444-01 3 440826 440826 A T CHL1 Missense_Mutation p.Y1127F 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-L9-A444-01 3 447382 447382 C A CHL1 Silent p.P1221P 0.39 TCGA-L9-A444-01 3 47629677 47629677 G A SMARCC1 3'UTR 0.16 TCGA-L9-A444-01 3 48465346 48465346 C A PLXNB1 Silent p.G225G 0.25 TCGA-L9-A444-01 3 48604356 48604356 C A COL7A1 Missense_Mutation p.G2737V 0.22 probably_damaging(1) TCGA-L9-A444-01 3 48604357 48604357 C A COL7A1 Nonsense_Mutation p.G2737* 0.23 TCGA-L9-A444-01 3 49162352 49162352 C A LAMB2 Missense_Mutation p.R964L 0.10 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 3 69026885 69026885 T A EOGT Nonsense_Mutation p.K406* 0.10 TCGA-L9-A444-01 3 7348224 7348224 C A GRM7 Silent p.G306G 0.12 TCGA-L9-A444-01 3 7348225 7348225 C A GRM7 Missense_Mutation p.H307N 0.12 tolerated(0.07) benign(0.011) TCGA-L9-A444-01 3 8671361 8671361 C A SSUH2 Missense_Mutation p.G193W 0.09 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 3 87017812 87017812 A T VGLL3 Missense_Mutation p.S289T 0.07 tolerated(1) benign(0) TCGA-L9-A444-01 3 98304296 98304296 G T CPOX Silent p.L387L 0.12 TCGA-L9-A444-01 4 101946897 101946897 C A PPP3CA 3'UTR 0.33 TCGA-L9-A444-01 4 109667553 109667553 A T ETNPPL Splice_Site p.X435_splice 0.20 TCGA-L9-A444-01 4 114195618 114195618 C T ANK2 Missense_Mutation p.T499I 0.12 probably_damaging(0.998) TCGA-L9-A444-01 4 114239702 114239702 G T ANK2 Missense_Mutation p.R942S 0.25 probably_damaging(0.917) TCGA-L9-A444-01 4 119953027 119953027 C A SYNPO2 Missense_Mutation p.P1033T 0.15 tolerated(0.3) benign(0.009) TCGA-L9-A444-01 4 140282926 140282926 A T NAA15 Missense_Mutation p.M530L 0.29 tolerated(0.24) probably_damaging(0.997) TCGA-L9-A444-01 4 151850104 151850104 G C LRBA Silent p.V110V 0.16 TCGA-L9-A444-01 4 155157460 155157460 G A DCHS2 Silent p.L2327L 0.12 TCGA-L9-A444-01 4 157693995 157693995 T A PDGFC Silent p.P182P 0.12 TCGA-L9-A444-01 4 169632829 169632829 C A PALLD Silent p.S573S 0.14 TCGA-L9-A444-01 4 173269745 173269745 G T GALNTL6 Missense_Mutation p.W153L 0.15 tolerated(0.46) possibly_damaging(0.573) TCGA-L9-A444-01 4 175416775 175416775 C A HPGD Missense_Mutation p.G141V 0.32 deleterious(0.03) possibly_damaging(0.871) TCGA-L9-A444-01 4 188924072 188924072 G T ZFP42 Missense_Mutation p.Q37H 0.12 deleterious(0.03) possibly_damaging(0.459) TCGA-L9-A444-01 4 38830217 38830217 C G TLR6 Missense_Mutation p.R293P 0.14 tolerated(0.09) benign(0.004) TCGA-L9-A444-01 4 419564 419564 C A ABCA11P RNA 0.23 TCGA-L9-A444-01 4 44450244 44450244 G A KCTD8 Silent p.I99I 0.22 TCGA-L9-A444-01 4 46305546 46305546 T C GABRA2 Missense_Mutation p.M263V 0.31 deleterious(0) possibly_damaging(0.803) TCGA-L9-A444-01 4 52861939 52861939 C A LRRC66 Missense_Mutation p.D417Y 0.08 deleterious(0.03) possibly_damaging(0.646) TCGA-L9-A444-01 4 52883431 52883431 T A LRRC66 Missense_Mutation p.S117C 0.15 deleterious(0) probably_damaging(0.981) TCGA-L9-A444-01 4 53283 53283 C A ZNF595 5'UTR 0.07 TCGA-L9-A444-01 4 55955876 55955876 A G KDR Missense_Mutation p.W1096R 0.20 deleterious(0.02) probably_damaging(0.998) TCGA-L9-A444-01 4 57215456 57215456 A G AASDH Missense_Mutation p.S821P 0.15 deleterious(0) probably_damaging(0.992) TCGA-L9-A444-01 4 6474013 6474013 G T PPP2R2C 5'UTR 0.49 TCGA-L9-A444-01 4 68699015 68699015 C G TMPRSS11D Missense_Mutation p.W200S 0.22 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 4 71232458 71232458 C A SMR3A Missense_Mutation p.P51Q 0.15 deleterious_low_confidence(0.03) unknown(0) TCGA-L9-A444-01 4 71232460 71232460 C A SMR3A Missense_Mutation p.P52T 0.16 deleterious_low_confidence(0.02) unknown(0) TCGA-L9-A444-01 4 71255480 71255480 C T SMR3B Missense_Mutation p.P52L 0.20 deleterious_low_confidence(0) unknown(0) TCGA-L9-A444-01 4 73942003 73942003 C T ANKRD17 Nonsense_Mutation p.W2586* 0.24 TCGA-L9-A444-01 4 74351680 74351680 T C AFM Silent p.C124C 0.11 TCGA-L9-A444-01 4 74853242 74853242 G T PPBP Silent p.V92V 0.30 TCGA-L9-A444-01 4 79371405 79371405 G T FRAS1 Silent p.G2125G 0.18 TCGA-L9-A444-01 4 8621242 8621242 C - CPZ Frame_Shift_Del p.R620Gfs*22 0.24 TCGA-L9-A444-01 4 89352418 89352418 G A HERC6 Missense_Mutation p.M737I 0.20 tolerated(0.38) benign(0.01) TCGA-L9-A444-01 5 121488214 121488214 C T ZNF474 Missense_Mutation p.P177S 0.20 deleterious(0.04) probably_damaging(0.976) TCGA-L9-A444-01 5 1232368 1232368 C A SLC6A18 Silent p.V65V 0.44 TCGA-L9-A444-01 5 1243730 1243730 G T SLC6A18 Missense_Mutation p.G398W 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-L9-A444-01 5 127614382 127614382 A T FBN2 Silent p.T2430T 0.28 TCGA-L9-A444-01 5 1280366 1280366 G C TERT Silent p.S619S 0.10 TCGA-L9-A444-01 5 128365338 128365338 G T SLC27A6 Missense_Mutation p.V541F 0.44 tolerated(0.06) benign(0.001) TCGA-L9-A444-01 5 129037267 129037267 G T ADAMTS19 Missense_Mutation p.E1041D 0.23 deleterious(0.04) possibly_damaging(0.659) TCGA-L9-A444-01 5 129040072 129040072 T A ADAMTS19 Silent p.G1094G 0.31 TCGA-L9-A444-01 5 131923330 131923330 G T RAD50 Missense_Mutation p.R278L 0.14 tolerated(0.09) benign(0.016) TCGA-L9-A444-01 5 137593516 137593516 C A GFRA3 Missense_Mutation p.Q199H 0.35 tolerated(0.13) probably_damaging(0.99) TCGA-L9-A444-01 5 140563269 140563269 G A PCDHB16 Missense_Mutation p.G379R 0.27 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-L9-A444-01 5 140798842 140798842 G T PCDHGB7 Silent p.A472A 0.22 TCGA-L9-A444-01 5 149216066 149216066 G A PPARGC1B Missense_Mutation p.R683H 0.31 deleterious(0.03) benign(0.099) TCGA-L9-A444-01 5 149754297 149754297 G T TCOF1 Missense_Mutation p.A401S 0.28 deleterious(0.02) probably_damaging(0.967) TCGA-L9-A444-01 5 151049293 151049293 G T SPARC Missense_Mutation p.T128K 0.15 deleterious(0.01) possibly_damaging(0.668) TCGA-L9-A444-01 5 158743766 158743766 C A IL12B Missense_Mutation p.S305I 0.32 tolerated(0.08) benign(0.006) TCGA-L9-A444-01 5 161324432 161324432 T A GABRA1 3'UTR 0.11 TCGA-L9-A444-01 5 167643911 167643911 G C TENM2 Missense_Mutation p.S1406T 0.21 tolerated(0.74) possibly_damaging(0.867) TCGA-L9-A444-01 5 169267845 169267845 C A DOCK2 Missense_Mutation p.H930N 0.28 tolerated(0.58) benign(0.001) TCGA-L9-A444-01 5 178552142 178552142 A T ADAMTS2 Nonsense_Mutation p.C930* 0.31 TCGA-L9-A444-01 5 31799685 31799685 G T PDZD2 Missense_Mutation p.Q110H 0.38 deleterious(0.01) possibly_damaging(0.885) TCGA-L9-A444-01 5 33649788 33649788 T C ADAMTS12 Missense_Mutation p.H402R 0.47 deleterious(0) probably_damaging(0.955) TCGA-L9-A444-01 5 35965989 35965989 C A UGT3A1 Missense_Mutation p.M114I 0.48 tolerated(0.11) benign(0.014) TCGA-L9-A444-01 5 39110456 39110456 A T FYB Splice_Site p.X822_splice 0.26 TCGA-L9-A444-01 5 40934430 40934431 CG - C7 Frame_Shift_Del p.R48Qfs*21 0.17 TCGA-L9-A444-01 5 40959645 40959645 C A C7 Silent p.P528P 0.26 TCGA-L9-A444-01 5 43298925 43298925 G C HMGCS1 Missense_Mutation p.T48S 0.44 deleterious(0) possibly_damaging(0.906) TCGA-L9-A444-01 5 45645631 45645631 C A HCN1 Nonsense_Mutation p.E169* 0.25 TCGA-L9-A444-01 5 45695936 45695936 G T HCN1 Missense_Mutation p.P87H 0.50 tolerated(0.12) benign(0.339) TCGA-L9-A444-01 5 50679412 50679412 T C ISL1 5'UTR 0.19 TCGA-L9-A444-01 5 55202103 55202103 G T IL31RA Missense_Mutation p.W413C 0.30 deleterious(0) probably_damaging(0.987) TCGA-L9-A444-01 5 82948630 82948630 G T HAPLN1 Silent p.P38P 0.22 TCGA-L9-A444-01 5 9119136 9119136 C A SEMA5A Silent p.V633V 0.23 TCGA-L9-A444-01 6 102516280 102516280 G C GRIK2 Missense_Mutation p.R874P 0.29 tolerated(0.07) probably_damaging(0.963) TCGA-L9-A444-01 6 110301342 110301342 C A GPR6 Missense_Mutation p.L343M 0.28 deleterious(0.02) probably_damaging(0.986) TCGA-L9-A444-01 6 112462696 112462696 C G LAMA4 Missense_Mutation p.E893Q 0.12 deleterious(0.01) possibly_damaging(0.574) TCGA-L9-A444-01 6 129674435 129674435 T C LAMA2 Silent p.P1550P 0.12 TCGA-L9-A444-01 6 135360766 135360766 C T HBS1L Silent p.V125V 0.21 TCGA-L9-A444-01 6 146276454 146276454 C A SHPRH Missense_Mutation p.S2I 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L9-A444-01 6 151239763 151239763 G T MTHFD1L Nonsense_Mutation p.E315* 0.27 TCGA-L9-A444-01 6 152129212 152129212 C T ESR1 Silent p.P55P 0.38 TCGA-L9-A444-01 6 154360788 154360788 T A OPRM1 Missense_Mutation p.L130I 0.31 tolerated(0.08) benign(0.189) TCGA-L9-A444-01 6 15452269 15452269 A T JARID2 Missense_Mutation p.Q119L 0.27 deleterious(0) probably_damaging(0.989) TCGA-L9-A444-01 6 157150382 157150382 G T ARID1B Missense_Mutation p.V522L 0.20 benign(0.406) TCGA-L9-A444-01 6 160106029 160106029 G A SOD2 Missense_Mutation p.S127F 0.09 deleterious(0) probably_damaging(0.968) TCGA-L9-A444-01 6 25917221 25917221 G T SLC17A2 Missense_Mutation p.H248Q 0.23 deleterious(0) benign(0.377) TCGA-L9-A444-01 6 26252270 26252270 G T HIST1H2BH 3'UTR 0.29 TCGA-L9-A444-01 6 26393421 26393421 A G BTN2A2 3'UTR 0.10 TCGA-L9-A444-01 6 26451940 26451940 C T BTN3A3 Silent p.I352I 0.11 TCGA-L9-A444-01 6 27222774 27222774 A T PRSS16 Missense_Mutation p.D447V 0.28 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 6 27776021 27776021 C G HIST1H2AI Missense_Mutation p.R12G 0.12 deleterious_low_confidence(0.04) unknown(0) TCGA-L9-A444-01 6 29430475 29430475 G C OR2H1 Missense_Mutation p.R310T 0.24 tolerated(0.12) benign(0.002) TCGA-L9-A444-01 6 32133937 32133937 C A PPT2 3'Flank 0.22 TCGA-L9-A444-01 6 39693053 39693053 C A KIF6 Missense_Mutation p.V12L 0.29 tolerated(0.14) benign(0.075) TCGA-L9-A444-01 6 40400468 40400468 G C LRFN2 Missense_Mutation p.L129V 0.19 deleterious(0) probably_damaging(0.982) TCGA-L9-A444-01 6 42987063 42987063 T A KLHDC3 Silent p.I347I 0.29 TCGA-L9-A444-01 6 46801245 46801245 T C MEP1A Missense_Mutation p.F527L 0.09 tolerated(0.23) benign(0.116) TCGA-L9-A444-01 6 47650028 47650028 C A GPR111 Missense_Mutation p.T578N 0.13 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 6 47678552 47678552 C A GPR115 Missense_Mutation p.T77K 0.21 tolerated(0.25) benign(0.086) TCGA-L9-A444-01 6 47682590 47682590 A T GPR115 Missense_Mutation p.T537S 0.21 deleterious(0) probably_damaging(0.999) TCGA-L9-A444-01 6 47847372 47847372 C T PTCHD4 Missense_Mutation p.S403N 0.21 tolerated(0.26) probably_damaging(0.966) TCGA-L9-A444-01 6 49587008 49587008 A T RHAG Nonsense_Mutation p.Y75* 0.13 TCGA-L9-A444-01 6 49754205 49754205 A C PGK2 Missense_Mutation p.N232K 0.18 deleterious(0) possibly_damaging(0.57) TCGA-L9-A444-01 6 4996558 4996558 C A RPP40 Missense_Mutation p.C219F 0.08 deleterious(0.04) probably_damaging(0.993) TCGA-L9-A444-01 6 5109625 5109625 C A LYRM4 3'UTR 0.19 TCGA-L9-A444-01 6 5369389 5369389 G T FARS2 Missense_Mutation p.A196S 0.11 deleterious(0.02) benign(0.081) TCGA-L9-A444-01 6 55223807 55223807 T A GFRAL Missense_Mutation p.C275S 0.41 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 6 55378832 55378832 G T HMGCLL1 Intron 0.18 TCGA-L9-A444-01 6 56468749 56468749 T A DST Intron 0.22 TCGA-L9-A444-01 6 6145775 6145775 C A F13A1 3'UTR 0.30 TCGA-L9-A444-01 6 69640475 69640475 C T BAI3 Missense_Mutation p.T261I 0.33 tolerated(0.13) benign(0.027) TCGA-L9-A444-01 6 71010021 71010021 C A COL9A1 Missense_Mutation p.D53Y 0.34 unknown(0) TCGA-L9-A444-01 6 74073515 74073515 G A KHDC3L Missense_Mutation p.E196K 0.08 tolerated(0.8) benign(0.028) TCGA-L9-A444-01 6 75823384 75823384 C A COL12A1 Missense_Mutation p.D2592Y 0.26 possibly_damaging(0.583) TCGA-L9-A444-01 6 89910980 89910980 T C GABRR1 Missense_Mutation p.I60V 0.37 tolerated_low_confidence(0.42) benign(0) TCGA-L9-A444-01 6 89967559 89967559 G T GABRR2 Missense_Mutation p.H410N 0.32 tolerated(0.4) benign(0.367) TCGA-L9-A444-01 6 89978866 89978866 C A GABRR2 Missense_Mutation p.D126Y 0.26 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 6 96651252 96651252 G T FUT9 Missense_Mutation p.G74V 0.27 deleterious(0) probably_damaging(0.997) TCGA-L9-A444-01 7 100457640 100457640 G T SLC12A9 Missense_Mutation p.A371S 0.24 deleterious(0) probably_damaging(0.997) TCGA-L9-A444-01 7 106508151 106508151 C G PIK3CG Missense_Mutation p.R49G 0.29 tolerated_low_confidence(0.2) benign(0.062) TCGA-L9-A444-01 7 107834760 107834760 C A NRCAM Missense_Mutation p.V526F 0.09 deleterious(0.02) possibly_damaging(0.876) TCGA-L9-A444-01 7 113518416 113518416 G T PPP1R3A Missense_Mutation p.Q911K 0.26 tolerated(0.29) benign(0.028) TCGA-L9-A444-01 7 11675828 11675828 C A THSD7A Missense_Mutation p.W317C 0.37 deleterious(0.03) benign(0.008) TCGA-L9-A444-01 7 126079092 126079092 C A GRM8 3'UTR 0.12 TCGA-L9-A444-01 7 128478095 128478095 C A FLNC Missense_Mutation p.P342T 0.05 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 7 131128298 131128298 G T MKLN1 Missense_Mutation p.C411F 0.31 tolerated(0.34) benign(0.003) TCGA-L9-A444-01 7 131888128 131888128 G T PLXNA4 Silent p.V783V 0.28 TCGA-L9-A444-01 7 133749104 133749104 G T EXOC4 Missense_Mutation p.Q916H 0.32 tolerated(0.46) possibly_damaging(0.671) TCGA-L9-A444-01 7 135419058 135419058 C A FAM180A Missense_Mutation p.A63S 0.32 tolerated(0.14) benign(0.406) TCGA-L9-A444-01 7 138252366 138252366 G A TRIM24 Silent p.Q557Q 0.10 TCGA-L9-A444-01 7 141765394 141765394 T C MGAM Intron 0.17 TCGA-L9-A444-01 7 142566455 142566455 G C EPHB6 Silent p.T748T 0.25 TCGA-L9-A444-01 7 143036376 143036376 C A CLCN1 Missense_Mutation p.P478T 0.10 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 7 143175275 143175275 A T TAS2R41 Missense_Mutation p.S104C 0.08 deleterious(0) probably_damaging(0.999) TCGA-L9-A444-01 7 146829375 146829375 G C CNTNAP2 Silent p.V374V 0.26 TCGA-L9-A444-01 7 149531022 149531022 C A ZNF862 5'Flank 0.35 TCGA-L9-A444-01 7 150174514 150174514 G T GIMAP8 Silent p.L548L 0.25 TCGA-L9-A444-01 7 150417699 150417699 C T GIMAP1 Nonsense_Mutation p.Q203* 0.37 TCGA-L9-A444-01 7 151962236 151962236 G T KMT2C Missense_Mutation p.F357L 0.06 benign(0.02) TCGA-L9-A444-01 7 17379124 17379124 G T AHR Nonsense_Mutation p.E559* 0.10 TCGA-L9-A444-01 7 37780442 37780442 C A GPR141 Silent p.P149P 0.20 TCGA-L9-A444-01 7 37780443 37780443 C T GPR141 Silent p.L150L 0.19 TCGA-L9-A444-01 7 44149840 44149840 C T AEBP1 Missense_Mutation p.A432V 0.07 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 7 45753346 45753346 C A ADCY1 Silent p.R1038R 0.36 TCGA-L9-A444-01 7 48431657 48431657 G A ABCA13 Missense_Mutation p.V3932I 0.11 possibly_damaging(0.479) TCGA-L9-A444-01 7 50444305 50444305 G A IKZF1 Missense_Mutation p.A79T 0.15 tolerated(0.27) benign(0.086) TCGA-L9-A444-01 7 73731974 73731974 C A CLIP2 Missense_Mutation p.A33E 0.12 tolerated(0.16) benign(0.018) TCGA-L9-A444-01 7 81593628 81593628 C A CACNA2D1 Silent p.L874L 0.37 TCGA-L9-A444-01 7 86556212 86556212 C T KIAA1324L Nonsense_Mutation p.W370* 0.11 TCGA-L9-A444-01 7 892570 892570 G T SUN1 Missense_Mutation p.R345L 0.10 tolerated(0.57) benign(0.003) TCGA-L9-A444-01 7 94048850 94048850 C A COL1A2 Missense_Mutation p.A689D 0.22 unknown(0) TCGA-L9-A444-01 8 102213836 102213836 C G ZNF706 Missense_Mutation p.R45T 0.26 deleterious(0.02) unknown(0) TCGA-L9-A444-01 8 104922393 104922393 G T RIMS2 Silent p.T552T 0.16 TCGA-L9-A444-01 8 113504735 113504735 G T CSMD3 Missense_Mutation p.A1754D 0.28 tolerated(0.22) probably_damaging(0.953) TCGA-L9-A444-01 8 113562993 113562993 G T CSMD3 Missense_Mutation p.P1491T 0.07 deleterious(0.02) probably_damaging(0.993) TCGA-L9-A444-01 8 113702249 113702249 C A CSMD3 Missense_Mutation p.G668V 0.29 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 8 125115446 125115446 G T FER1L6 Missense_Mutation p.D1729Y 0.15 tolerated(0.07) possibly_damaging(0.677) TCGA-L9-A444-01 8 126049485 126049485 T A KIAA0196 Missense_Mutation p.N1059Y 0.28 deleterious(0.01) possibly_damaging(0.447) TCGA-L9-A444-01 8 128429005 128429005 G T POU5F1B Missense_Mutation p.E298D 0.16 tolerated(0.36) benign(0.025) TCGA-L9-A444-01 8 132052202 132052202 G T ADCY8 Missense_Mutation p.D126E 0.33 tolerated(0.21) probably_damaging(0.935) TCGA-L9-A444-01 8 139158277 139158277 G C FAM135B Silent p.L1155L 0.16 TCGA-L9-A444-01 8 20107146 20107146 G T LZTS1 3'UTR 0.39 TCGA-L9-A444-01 8 37686427 37686427 C T GPR124 Silent p.I120I 0.18 TCGA-L9-A444-01 8 37687014 37687014 C G GPR124 Missense_Mutation p.S164C 0.10 deleterious(0) probably_damaging(0.998) TCGA-L9-A444-01 8 37687024 37687024 C A GPR124 Silent p.I167I 0.12 TCGA-L9-A444-01 8 39624695 39624695 C G ADAM2 Missense_Mutation p.G430R 0.17 deleterious(0) probably_damaging(0.996) TCGA-L9-A444-01 8 41585468 41585468 C A ANK1 Silent p.R128R 0.17 TCGA-L9-A444-01 8 41791426 41791426 C A KAT6A Nonsense_Mutation p.E1438* 0.12 TCGA-L9-A444-01 8 48848447 48848447 T A PRKDC Missense_Mutation p.Y431F 0.08 benign(0.202) TCGA-L9-A444-01 8 52384755 52384755 T C PXDNL Missense_Mutation p.I268M 0.30 tolerated(0.33) possibly_damaging(0.703) TCGA-L9-A444-01 8 53071530 53071530 G T ST18 Silent p.I578I 0.18 TCGA-L9-A444-01 8 53074101 53074101 G A ST18 Silent p.F476F 0.21 TCGA-L9-A444-01 8 53555067 53555067 C A RB1CC1 Missense_Mutation p.S1394I 0.28 deleterious(0.04) benign(0.1) TCGA-L9-A444-01 8 54163421 54163421 C A OPRK1 Silent p.P59P 0.17 TCGA-L9-A444-01 8 54684616 54684616 C A ATP6V1H Missense_Mutation p.D328Y 0.22 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 8 65494171 65494171 C T BHLHE22 Missense_Mutation p.P275L 0.16 deleterious(0) probably_damaging(0.963) TCGA-L9-A444-01 8 67998346 67998346 G T CSPP1 Splice_Site p.X137_splice 0.26 TCGA-L9-A444-01 8 68396992 68396992 C A CPA6 Missense_Mutation p.M223I 0.39 tolerated(0.08) benign(0.042) TCGA-L9-A444-01 8 73480547 73480547 A T KCNB2 Missense_Mutation p.K193M 0.13 deleterious(0) probably_damaging(0.928) TCGA-L9-A444-01 8 73848448 73848448 C A KCNB2 Silent p.S286S 0.31 TCGA-L9-A444-01 8 77766866 77766866 C - ZFHX4 Frame_Shift_Del p.T2572Qfs*7 0.19 TCGA-L9-A444-01 8 87076716 87076716 G C PSKH2 Missense_Mutation p.S110R 0.26 tolerated(0.55) benign(0.015) TCGA-L9-A444-01 8 94930028 94930028 G T PDP1 Intron 0.26 TCGA-L9-A444-01 9 100963925 100963925 C A TBC1D2 Missense_Mutation p.D765Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-L9-A444-01 9 100963926 100963926 C A TBC1D2 Missense_Mutation p.Q764H 0.31 deleterious(0) possibly_damaging(0.789) TCGA-L9-A444-01 9 101829290 101829290 G T COL15A1 Missense_Mutation p.D1260Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-L9-A444-01 9 101830877 101830877 G A COL15A1 Missense_Mutation p.G1293D 0.23 deleterious(0.04) probably_damaging(0.999) TCGA-L9-A444-01 9 107361685 107361685 C - OR13C5 Frame_Shift_Del p.E4Kfs*11 0.16 TCGA-L9-A444-01 9 110248040 110248040 G T KLF4 Missense_Mutation p.H478N 0.06 deleterious(0) possibly_damaging(0.888) TCGA-L9-A444-01 9 111625524 111625524 G A ACTL7A Missense_Mutation p.E308K 0.31 tolerated(0.05) benign(0.004) TCGA-L9-A444-01 9 115337091 115337092 CC T KIAA1958 Frame_Shift_Del p.P244Lfs*4 0.28 TCGA-L9-A444-01 9 117386678 117386678 G A C9orf91 Missense_Mutation p.C52Y 0.27 deleterious(0) probably_damaging(0.942) TCGA-L9-A444-01 9 125152497 125152497 G T PTGS1 Missense_Mutation p.M439I 0.28 tolerated(1) benign(0.001) TCGA-L9-A444-01 9 125486611 125486611 C T OR1L4 Silent p.L115L 0.26 TCGA-L9-A444-01 9 126125255 126125255 G T CRB2 Missense_Mutation p.R69L 0.35 tolerated(0.13) unknown(0) TCGA-L9-A444-01 9 127982955 127982955 A T RABEPK Missense_Mutation p.T168S 0.29 tolerated(0.75) benign(0.04) TCGA-L9-A444-01 9 13247787 13247787 G A MPDZ Silent p.A10A 0.14 TCGA-L9-A444-01 9 133553951 133553951 C A PRDM12 Nonsense_Mutation p.Y202* 0.17 TCGA-L9-A444-01 9 135698627 135698627 G T AK8 Missense_Mutation p.A285D 0.22 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 9 139103180 139103180 C A QSOX2 Silent p.S493S 0.19 TCGA-L9-A444-01 9 140449977 140449977 C A DPH7 Missense_Mutation p.S358I 0.07 deleterious(0.01) benign(0.374) TCGA-L9-A444-01 9 16436720 16436720 G C BNC2 Missense_Mutation p.A491G 0.23 deleterious(0) possibly_damaging(0.867) TCGA-L9-A444-01 9 17340936 17340936 G T CNTLN Missense_Mutation p.G586C 0.21 deleterious(0.01) probably_damaging(0.922) TCGA-L9-A444-01 9 17340937 17340937 G T CNTLN Missense_Mutation p.G586V 0.21 deleterious(0.01) possibly_damaging(0.799) TCGA-L9-A444-01 9 18941822 18941822 A T FAM154A Silent p.P78P 0.23 TCGA-L9-A444-01 9 19102711 19102711 C A HAUS6 5'UTR 0.19 TCGA-L9-A444-01 9 21409357 21409358 - C IFNA8 Frame_Shift_Ins p.Q63Pfs*5 0.25 TCGA-L9-A444-01 9 26999679 26999679 C T LRRC19 Missense_Mutation p.G5D 0.19 tolerated(0.3) benign(0.025) TCGA-L9-A444-01 9 27948772 27948772 T C LINGO2 3'UTR 0.25 TCGA-L9-A444-01 9 32635031 32635031 C A TAF1L Missense_Mutation p.D183Y 0.30 deleterious_low_confidence(0.01) benign(0.007) TCGA-L9-A444-01 9 33030644 33030644 T A DNAJA1 Missense_Mutation p.L208I 0.27 tolerated(0.12) benign(0.258) TCGA-L9-A444-01 9 35751270 35751270 G T RGP1 Missense_Mutation p.Q165H 0.28 tolerated(0.13) benign(0.021) TCGA-L9-A444-01 9 38395801 38395801 A G ALDH1B1 Missense_Mutation p.Y19C 0.08 tolerated(0.17) possibly_damaging(0.518) TCGA-L9-A444-01 9 5300202 5300202 C A RLN2 Missense_Mutation p.G152C 0.11 deleterious(0.02) probably_damaging(0.963) TCGA-L9-A444-01 9 69112869 69112869 C A RP11-87H9.3 5'Flank 0.23 TCGA-L9-A444-01 9 72131967 72131967 C A APBA1 Missense_Mutation p.G54W 0.20 deleterious_low_confidence(0) possibly_damaging(0.461) TCGA-L9-A444-01 9 73424926 73424926 C A TRPM3 Intron 0.29 TCGA-L9-A444-01 9 78973812 78973812 G T PCSK5 Missense_Mutation p.D1853Y 0.20 deleterious(0) unknown(0) TCGA-L9-A444-01 9 8341205 8341205 A G PTPRD Missense_Mutation p.F1671L 0.28 deleterious(0) probably_damaging(0.945) TCGA-L9-A444-01 X 100871220 100871220 G A ARMCX6 Missense_Mutation p.L131F 0.25 deleterious(0) possibly_damaging(0.49) TCGA-L9-A444-01 X 100879880 100879880 C T ARMCX3 5'UTR 0.10 TCGA-L9-A444-01 X 102842351 102842351 C A TCEAL4 3'UTR 0.13 TCGA-L9-A444-01 X 108780217 108780217 C A NXT2 Missense_Mutation p.H49Q 0.12 tolerated_low_confidence(0.59) benign(0.001) TCGA-L9-A444-01 X 110653473 110653473 C A DCX Missense_Mutation p.A133S 0.22 tolerated(0.05) probably_damaging(0.969) TCGA-L9-A444-01 X 110654026 110654026 A - DCX Frame_Shift_Del p.F59Lfs*18 0.10 TCGA-L9-A444-01 X 11793188 11793188 C - MSL3 Frame_Shift_Del p.A519Efs*10 0.08 TCGA-L9-A444-01 X 117959872 117959872 G T ZCCHC12 Missense_Mutation p.W222L 0.13 deleterious(0.02) benign(0.258) TCGA-L9-A444-01 X 119005484 119005484 T C RNF113A Silent p.R31R 0.12 TCGA-L9-A444-01 X 119388096 119388096 C T ZBTB33 Silent p.L276L 0.15 TCGA-L9-A444-01 X 123197787 123197787 T A STAG2 Missense_Mutation p.H637Q 0.24 tolerated(0.29) benign(0.002) TCGA-L9-A444-01 X 123556388 123556388 C G TENM1 Missense_Mutation p.R1402P 0.17 deleterious(0) possibly_damaging(0.887) TCGA-L9-A444-01 X 123587342 123587342 C A TENM1 Splice_Site p.X1317_splice 0.31 TCGA-L9-A444-01 X 125686553 125686553 C A DCAF12L1 Silent p.A13A 0.21 TCGA-L9-A444-01 X 12734686 12734686 C A FRMPD4 Missense_Mutation p.P703Q 0.06 deleterious_low_confidence(0.01) benign(0.041) TCGA-L9-A444-01 X 128963063 128963063 C A ZDHHC9 Missense_Mutation p.M74I 0.19 tolerated(0.65) benign(0) TCGA-L9-A444-01 X 129271320 129271320 C A AIFM1 Intron 0.19 TCGA-L9-A444-01 X 129343687 129343687 G T ZNF280C Missense_Mutation p.S661Y 0.11 tolerated(0.19) benign(0.003) TCGA-L9-A444-01 X 129630093 129630093 G A RP1-274L7.1 Intron 0.13 TCGA-L9-A444-01 X 130218636 130218636 C T ARHGAP36 Missense_Mutation p.S262F 0.16 deleterious(0) probably_damaging(0.999) TCGA-L9-A444-01 X 13337594 13337594 G T ATXN3L Silent p.R154R 0.20 TCGA-L9-A444-01 X 134494411 134494411 C A ZNF449 Missense_Mutation p.H323N 0.25 tolerated(0.12) possibly_damaging(0.854) TCGA-L9-A444-01 X 13786256 13786256 A G OFD1 Missense_Mutation p.I947M 0.26 tolerated(0.88) benign(0) TCGA-L9-A444-01 X 140985087 140985087 G T MAGEC3 Missense_Mutation p.D515Y 0.12 deleterious(0) probably_damaging(0.986) TCGA-L9-A444-01 X 140994194 140994194 A T MAGEC1 Missense_Mutation p.Q335L 0.23 deleterious_low_confidence(0) benign(0.069) TCGA-L9-A444-01 X 140996597 140996597 C A MAGEC1 Missense_Mutation p.S1136Y 0.11 tolerated_low_confidence(0.14) unknown(0) TCGA-L9-A444-01 X 148578033 148578033 C A IDS Missense_Mutation p.L30F 0.13 deleterious(0) probably_damaging(0.979) TCGA-L9-A444-01 X 148798206 148798206 G T MAGEA11 Nonsense_Mutation p.E354* 0.20 TCGA-L9-A444-01 X 149826501 149826501 G T MTM1 Splice_Site p.X420_splice 0.10 TCGA-L9-A444-01 X 150840123 150840123 C A PASD1 Missense_Mutation p.Q437K 0.20 tolerated(0.08) possibly_damaging(0.714) TCGA-L9-A444-01 X 151869766 151869766 C G MAGEA6 Missense_Mutation p.S152R 0.33 tolerated(0.58) benign(0.029) TCGA-L9-A444-01 X 152101461 152101461 C T ZNF185 Missense_Mutation p.T355M 0.37 tolerated(0.44) benign(0.026) TCGA-L9-A444-01 X 15267024 15267024 G T ASB9 Missense_Mutation p.S201Y 0.22 deleterious(0) probably_damaging(0.995) TCGA-L9-A444-01 X 152710479 152710479 C G TREX2 Missense_Mutation p.R137P 0.38 tolerated(0.27) benign(0.031) TCGA-L9-A444-01 X 152915684 152915684 C A DUSP9 Missense_Mutation p.A360E 0.09 tolerated(1) benign(0) TCGA-L9-A444-01 X 153039883 153039883 G T PLXNB3 Missense_Mutation p.M1252I 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-L9-A444-01 X 153068799 153068799 C A PDZD4 3'UTR 0.30 TCGA-L9-A444-01 X 153170479 153170479 A G AVPR2 5'UTR 0.09 TCGA-L9-A444-01 X 153660668 153660668 A T ATP6AP1 Silent p.A140A 0.26 TCGA-L9-A444-01 X 153760820 153760820 C A G6PD Nonsense_Mutation p.E447* 0.15 TCGA-L9-A444-01 X 153993240 153993240 C T DKC1 Missense_Mutation p.A28V 0.16 deleterious(0.03) benign(0.15) TCGA-L9-A444-01 X 16707680 16707680 C A CTPS2 Silent p.V255V 0.19 TCGA-L9-A444-01 X 19507055 19507055 G A MAP3K15 Missense_Mutation p.S131F 0.13 tolerated(0.7) benign(0.004) TCGA-L9-A444-01 X 21534639 21534639 C A CNKSR2 Silent p.R283R 0.05 TCGA-L9-A444-01 X 21674179 21674179 C G KLHL34 Silent p.L576L 0.20 TCGA-L9-A444-01 X 23411072 23411072 G T PTCHD1 Missense_Mutation p.E479D 0.31 tolerated(0.9) benign(0.003) TCGA-L9-A444-01 X 27840432 27840432 A T MAGEB10 Nonsense_Mutation p.K337* 0.33 TCGA-L9-A444-01 X 2951417 2951417 G T ARSH Missense_Mutation p.M560I 0.27 tolerated(0.2) benign(0) TCGA-L9-A444-01 X 2951418 2951418 G T ARSH Missense_Mutation p.A561S 0.27 tolerated_low_confidence(0.23) benign(0.025) TCGA-L9-A444-01 X 30715865 30715865 T A GK Intron 0.26 TCGA-L9-A444-01 X 3227872 3227872 G T MXRA5 Missense_Mutation p.P2791H 0.09 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 X 3228020 3228020 C T MXRA5 Missense_Mutation p.V2742I 0.12 deleterious(0.03) probably_damaging(0.981) TCGA-L9-A444-01 X 32536136 32536136 C A DMD Nonsense_Mutation p.E761* 0.17 TCGA-L9-A444-01 X 34149899 34149899 C A FAM47A Missense_Mutation p.C166F 0.45 deleterious(0.03) probably_damaging(0.989) TCGA-L9-A444-01 X 34961216 34961216 C A FAM47B Missense_Mutation p.R90S 0.14 deleterious(0.05) benign(0) TCGA-L9-A444-01 X 37028854 37028854 C G FAM47C Missense_Mutation p.P791A 0.16 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 X 39932576 39932576 C A BCOR Missense_Mutation p.G675C 0.33 deleterious(0) probably_damaging(0.921) TCGA-L9-A444-01 X 44120530 44120530 G T EFHC2 Missense_Mutation p.R133S 0.31 deleterious(0) probably_damaging(0.991) TCGA-L9-A444-01 X 46388277 46388277 G A ZNF674 Missense_Mutation p.A28V 0.09 tolerated(0.07) benign(0.132) TCGA-L9-A444-01 X 47836557 47836557 C A ZNF182 Missense_Mutation p.R310M 0.07 deleterious(0) probably_damaging(1) TCGA-L9-A444-01 X 48418903 48418903 C A TBC1D25 Missense_Mutation p.S536Y 0.16 deleterious(0.03) benign(0.135) TCGA-L9-A444-01 X 48418904 48418904 C A TBC1D25 Silent p.S536S 0.16 TCGA-L9-A444-01 X 49063300 49063300 C A CACNA1F Nonsense_Mutation p.E1761* 0.19 TCGA-L9-A444-01 X 49689788 49689788 G T CLCN5 5'UTR 0.21 TCGA-L9-A444-01 X 49689794 49689794 G T CLCN5 5'UTR 0.23 TCGA-L9-A444-01 X 53279982 53279982 G T IQSEC2 Silent p.P592P 0.23 TCGA-L9-A444-01 X 53581872 53581872 G A HUWE1 Missense_Mutation p.P2739L 0.27 benign(0) TCGA-L9-A444-01 X 53629547 53629547 C A HUWE1 Silent p.T983T 0.25 TCGA-L9-A444-01 X 54784414 54784414 G C ITIH6 Nonsense_Mutation p.S698* 0.09 TCGA-L9-A444-01 X 54949856 54949856 C G TRO Silent p.P297P 0.33 TCGA-L9-A444-01 X 55479556 55479556 T A MAGEH1 3'UTR 0.20 TCGA-L9-A444-01 X 55515098 55515098 T C USP51 Missense_Mutation p.H92R 0.26 deleterious_low_confidence(0.01) unknown(0) TCGA-L9-A444-01 X 57620124 57620124 G A ZXDB Missense_Mutation p.R548H 0.13 tolerated(0.07) benign(0.056) TCGA-L9-A444-01 X 63444922 63444922 G T ASB12 Missense_Mutation p.H203Q 0.28 tolerated(0.29) possibly_damaging(0.867) TCGA-L9-A444-01 X 68725528 68725528 G T FAM155B Missense_Mutation p.G135C 0.17 deleterious(0.04) probably_damaging(0.995) TCGA-L9-A444-01 X 70465660 70465660 C G ZMYM3 Missense_Mutation p.L906F 0.27 deleterious(0) probably_damaging(0.994) TCGA-L9-A444-01 X 70524986 70524986 G C ITGB1BP2 Missense_Mutation p.D330H 0.27 deleterious(0.01) unknown(0) TCGA-L9-A444-01 X 70608161 70608161 C A TAF1 Silent p.A854A 0.19 TCGA-L9-A444-01 X 71360366 71360366 C T NHSL2 Nonsense_Mutation p.Q990* 0.14 TCGA-L9-A444-01 X 74332752 74332752 C G ABCB7 Missense_Mutation p.G102A 0.31 tolerated(0.19) benign(0.236) TCGA-L9-A444-01 X 85950040 85950040 C A DACH2 Silent p.S263S 0.10 TCGA-L9-A444-01 X 8767095 8767095 C T FAM9A Missense_Mutation p.M44I 0.24 deleterious_low_confidence(0.02) benign(0.216) TCGA-L9-A444-01 X 89177444 89177444 C A TGIF2LX Silent p.P120P 0.13 TCGA-L9-A444-01 X 90691596 90691596 C A PABPC5 Silent p.G340G 0.12 TCGA-L9-A444-01 X 91873605 91873605 C T PCDH11X Missense_Mutation p.S1237L 0.18 tolerated_low_confidence(0.18) benign(0.034) TCGA-L9-A444-01 X 96603139 96603139 C A DIAPH2 Missense_Mutation p.Q957K 0.37 deleterious(0.03) probably_damaging(0.989) TCGA-L9-A444-01 X 99930963 99930963 G T SYTL4 3'UTR 0.23 TCGA-L9-A50W-01 10 88419114 88419114 C T OPN4 Missense_Mutation p.P241L 0.05 tolerated(0.09) probably_damaging(0.968) TCGA-L9-A50W-01 12 1517384 1517384 C T ERC1 Nonsense_Mutation p.Q999* 0.41 TCGA-L9-A50W-01 13 64321286 64321286 G A AL445989.1 Missense_Mutation p.R118Q 0.29 unknown(0) TCGA-L9-A50W-01 14 65266528 65266528 A G SPTB Missense_Mutation p.L334P 0.28 deleterious(0) probably_damaging(1) TCGA-L9-A50W-01 15 44907579 44907579 A C SPG11 Missense_Mutation p.V1007G 0.39 deleterious(0) possibly_damaging(0.851) TCGA-L9-A50W-01 15 52536675 52536675 C T MYO5C Silent p.L756L 0.41 TCGA-L9-A50W-01 15 70961553 70961553 T A UACA Missense_Mutation p.E490D 0.36 tolerated(0.24) benign(0.138) TCGA-L9-A50W-01 15 76496169 76496169 C T C15orf27 Missense_Mutation p.S370F 0.30 deleterious_low_confidence(0) possibly_damaging(0.768) TCGA-L9-A50W-01 16 5061197 5061197 C T SEC14L5 Silent p.V634V 0.41 TCGA-L9-A50W-01 17 11984785 11984785 G T MAP2K4 Nonsense_Mutation p.G111* 0.60 TCGA-L9-A50W-01 17 42850783 42850783 C G ADAM11 Missense_Mutation p.T327S 0.32 deleterious(0) benign(0.155) TCGA-L9-A50W-01 17 48433217 48433217 G T XYLT2 Missense_Mutation p.Q388H 0.44 tolerated(0.13) benign(0.025) TCGA-L9-A50W-01 17 80445954 80445954 C G NARF Missense_Mutation p.S431C 0.38 deleterious(0) probably_damaging(0.972) TCGA-L9-A50W-01 19 17991733 17991733 C A SLC5A5 Missense_Mutation p.F343L 0.36 deleterious(0.01) probably_damaging(1) TCGA-L9-A50W-01 19 8533703 8533703 C T HNRNPM Missense_Mutation p.P294S 0.28 tolerated(0.19) benign(0.044) TCGA-L9-A50W-01 1 159283843 159283843 C A OR10J3 Missense_Mutation p.V203F 0.28 tolerated(0.11) benign(0.445) TCGA-L9-A50W-01 1 231472048 231472048 C T EXOC8 Missense_Mutation p.D482N 0.44 tolerated(1) benign(0) TCGA-L9-A50W-01 1 231902914 231902914 C G DISC1 Missense_Mutation p.L433V 0.30 tolerated(0.29) possibly_damaging(0.571) TCGA-L9-A50W-01 1 245850438 245850438 A C KIF26B Missense_Mutation p.I1385L 0.29 tolerated(0.37) unknown(0) TCGA-L9-A50W-01 21 47746425 47746425 C T PCNT Silent p.L63L 0.36 TCGA-L9-A50W-01 2 113414820 113414820 T C SLC20A1 Splice_Site p.X260_splice 0.36 TCGA-L9-A50W-01 2 166896104 166896104 A C SCN1A Silent p.V806V 0.33 TCGA-L9-A50W-01 2 179460509 179460509 A T TTN Missense_Mutation p.F19191Y 0.36 TCGA-L9-A50W-01 3 151545622 151545622 C T AADAC Missense_Mutation p.P288S 0.22 deleterious(0.01) probably_damaging(0.97) TCGA-L9-A50W-01 3 3887072 3887072 C A LRRN1 Missense_Mutation p.N249K 0.08 deleterious(0) probably_damaging(1) TCGA-L9-A50W-01 4 73414482 73414482 C T ADAMTS3 Missense_Mutation p.V73M 0.42 tolerated(0.06) possibly_damaging(0.767) TCGA-L9-A50W-01 5 112162946 112162946 T G APC Splice_Site p.X516_splice 0.48 TCGA-L9-A50W-01 7 121653221 121653221 T C PTPRZ1 Missense_Mutation p.V1374A 0.26 tolerated_low_confidence(0.09) benign(0.026) TCGA-L9-A50W-01 7 124511034 124511034 A T POT1 Missense_Mutation p.F62L 0.20 deleterious(0) probably_damaging(0.998) TCGA-L9-A50W-01 7 4959942 4959942 G T MMD2 Silent p.I50I 0.27 TCGA-L9-A50W-01 7 55249071 55249071 C T EGFR Missense_Mutation p.T790M 0.55 deleterious(0) probably_damaging(1) TCGA-L9-A50W-01 7 55259515 55259515 T G EGFR Missense_Mutation p.L858R 0.39 deleterious(0) probably_damaging(1) TCGA-L9-A50W-01 8 113697868 113697868 G T CSMD3 Missense_Mutation p.T750K 0.24 tolerated(0.17) probably_damaging(0.979) TCGA-L9-A50W-01 8 42914303 42914303 T C FNTA Missense_Mutation p.I90T 0.50 deleterious(0) probably_damaging(0.986) TCGA-L9-A50W-01 X 12728641 12728641 G A FRMPD4 Missense_Mutation p.A532T 0.72 tolerated(0.1) benign(0.017) TCGA-L9-A50W-01 X 47034489 47034489 C T RBM10 Nonsense_Mutation p.Q192* 0.67 TCGA-L9-A5IP-01 10 108448006 108448006 G C SORCS1 Missense_Mutation p.R502G 0.49 tolerated(0.15) benign(0.421) TCGA-L9-A5IP-01 10 118897542 118897542 T A VAX1 Missense_Mutation p.D9V 0.53 deleterious_low_confidence(0) unknown(0) TCGA-L9-A5IP-01 10 118969605 118969605 G T KCNK18 Missense_Mutation p.C317F 0.53 deleterious(0) probably_damaging(0.927) TCGA-L9-A5IP-01 10 16866950 16866950 G T CUBN 3'UTR 0.45 TCGA-L9-A5IP-01 10 95072832 95072832 G A MYOF Missense_Mutation p.S1945F 0.34 deleterious(0.01) probably_damaging(0.95) TCGA-L9-A5IP-01 10 95083098 95083098 C G MYOF Missense_Mutation p.W1763C 0.32 deleterious(0) probably_damaging(0.999) TCGA-L9-A5IP-01 10 96748809 96748809 T A CYP2C9 3'UTR 0.50 TCGA-L9-A5IP-01 11 103339339 103339339 G T DYNC2H1 Missense_Mutation p.G4231V 0.50 probably_damaging(0.996) TCGA-L9-A5IP-01 11 1083135 1083135 C A MUC2 Missense_Mutation p.R679S 0.50 probably_damaging(0.999) TCGA-L9-A5IP-01 11 111167010 111167010 T G COLCA1 Missense_Mutation p.D65A 0.60 possibly_damaging(0.728) TCGA-L9-A5IP-01 11 1154280 1154280 C A MUC5AC Silent p.L42L 0.44 TCGA-L9-A5IP-01 11 118376140 118376140 C T KMT2A Missense_Mutation p.P3178L 0.55 possibly_damaging(0.511) TCGA-L9-A5IP-01 11 123814480 123814480 G T OR6T1 Silent p.L22L 0.61 TCGA-L9-A5IP-01 11 125300030 125300030 C - PKNOX2 Frame_Shift_Del p.D397Mfs*25 0.42 TCGA-L9-A5IP-01 11 14632521 14632521 G T PSMA1 Missense_Mutation p.S4R 0.47 tolerated_low_confidence(0.53) benign(0.002) TCGA-L9-A5IP-01 11 17552770 17552770 C A USH1C Silent p.L106L 0.47 TCGA-L9-A5IP-01 11 30358310 30358310 G C ARL14EP Missense_Mutation p.G251R 0.48 deleterious(0.01) probably_damaging(1) TCGA-L9-A5IP-01 11 4409545 4409545 T G TRIM21 Silent p.A240A 0.65 TCGA-L9-A5IP-01 11 5172891 5172891 T C OR52A1 Missense_Mutation p.R237G 0.51 deleterious(0) benign(0.169) TCGA-L9-A5IP-01 11 56344736 56344736 A T OR5M10 Silent p.L154L 0.50 TCGA-L9-A5IP-01 11 57958274 57958274 C T OR9Q2 Silent p.F104F 0.55 TCGA-L9-A5IP-01 11 63999905 63999905 C T DNAJC4 Missense_Mutation p.H62Y 0.35 deleterious(0) probably_damaging(1) TCGA-L9-A5IP-01 11 65266441 65266441 C A MALAT1 RNA 0.52 TCGA-L9-A5IP-01 12 108642165 108642165 A T WSCD2 3'UTR 0.68 TCGA-L9-A5IP-01 12 110230479 110230479 G T TRPV4 Missense_Mutation p.T601N 0.59 deleterious(0) probably_damaging(0.995) TCGA-L9-A5IP-01 12 117701745 117701745 G T NOS1 Missense_Mutation p.T724N 0.61 tolerated(0.33) benign(0.004) TCGA-L9-A5IP-01 12 133384625 133384625 T C GOLGA3 Missense_Mutation p.M344V 0.58 tolerated_low_confidence(0.35) benign(0.001) TCGA-L9-A5IP-01 12 29624797 29624797 G T OVCH1 Nonsense_Mutation p.Y598* 0.64 TCGA-L9-A5IP-01 12 40012625 40012625 A T ABCD2 Missense_Mutation p.Y265N 0.60 tolerated(0.29) benign(0.435) TCGA-L9-A5IP-01 12 41421754 41421754 A G CNTN1 Missense_Mutation p.T936A 0.58 tolerated(1) benign(0) TCGA-L9-A5IP-01 12 52380600 52380600 A C ACVR1B Splice_Site p.X420_splice 0.60 TCGA-L9-A5IP-01 12 52380601 52380601 G T ACVR1B Splice_Site p.X420_splice 0.61 TCGA-L9-A5IP-01 12 8813475 8813475 G T MFAP5 Silent p.V26V 0.56 TCGA-L9-A5IP-01 12 93793065 93793065 T C NUDT4 Silent p.N152N 0.19 TCGA-L9-A5IP-01 13 101277883 101277883 C A TMTC4 Missense_Mutation p.S581I 0.57 deleterious(0.01) possibly_damaging(0.871) TCGA-L9-A5IP-01 13 111088686 111088686 G T COL4A2 Missense_Mutation p.G266V 0.55 benign(0.076) TCGA-L9-A5IP-01 13 38166236 38166236 C A POSTN Splice_Site p.X95_splice 0.54 TCGA-L9-A5IP-01 13 38225485 38225485 G A TRPC4 Missense_Mutation p.L666F 0.41 tolerated(0.72) benign(0.005) TCGA-L9-A5IP-01 13 38357147 38357147 G C TRPC4 Silent p.V108V 0.40 TCGA-L9-A5IP-01 13 46057470 46057470 A G COG3 Missense_Mutation p.T275A 0.28 deleterious(0.03) probably_damaging(0.942) TCGA-L9-A5IP-01 13 49281115 49281115 G T CYSLTR2 Missense_Mutation p.L54F 0.53 tolerated(0.26) benign(0.18) TCGA-L9-A5IP-01 13 52951577 52951577 C A THSD1 Missense_Mutation p.S843I 0.39 deleterious(0) probably_damaging(0.999) TCGA-L9-A5IP-01 14 23457139 23457141 CTC - C14orf93 In_Frame_Del p.E390del 0.60 TCGA-L9-A5IP-01 14 24619513 24619513 G T RNF31 Silent p.R351R 0.53 TCGA-L9-A5IP-01 14 47120362 47120362 T C RPL10L Missense_Mutation p.D193G 0.61 deleterious(0) possibly_damaging(0.818) TCGA-L9-A5IP-01 14 55458068 55458068 C A WDHD1 Missense_Mutation p.D402Y 0.50 deleterious(0) probably_damaging(0.928) TCGA-L9-A5IP-01 14 63174862 63174862 G T KCNH5 Missense_Mutation p.N777K 0.42 tolerated_low_confidence(0.91) benign(0.058) TCGA-L9-A5IP-01 14 73138004 73138004 G T DPF3 Missense_Mutation p.A305D 0.50 deleterious(0.04) benign(0.002) TCGA-L9-A5IP-01 15 23931972 23931972 G T NDN Missense_Mutation p.S131R 0.34 deleterious(0.03) probably_damaging(0.973) TCGA-L9-A5IP-01 15 33765619 33765619 G T RYR3 Splice_Site p.X18_splice 0.66 TCGA-L9-A5IP-01 15 34648880 34648880 C A NUTM1 Missense_Mutation p.Q863K 0.22 deleterious(0.01) benign(0.437) TCGA-L9-A5IP-01 15 40857052 40857052 G C C15orf57 5'UTR 0.71 TCGA-L9-A5IP-01 15 56207882 56207882 C T NEDD4 Missense_Mutation p.R383Q 0.15 tolerated_low_confidence(1) benign(0.001) TCGA-L9-A5IP-01 15 63918254 63918254 C T HERC1 Missense_Mutation p.R4402Q 0.28 probably_damaging(0.99) TCGA-L9-A5IP-01 15 69318865 69318865 C T NOX5 Intron 0.52 TCGA-L9-A5IP-01 15 72142376 72142376 C A MYO9A Splice_Site p.X2238_splice 0.20 TCGA-L9-A5IP-01 15 85488437 85488437 G A SLC28A1 3'UTR 0.43 TCGA-L9-A5IP-01 16 19451440 19451440 A T TMC5 Missense_Mutation p.Q27L 0.26 deleterious_low_confidence(0.03) benign(0.003) TCGA-L9-A5IP-01 16 20451670 20451670 C A ACSM5 Missense_Mutation p.A554D 0.40 deleterious(0.01) benign(0.217) TCGA-L9-A5IP-01 16 20554296 20554296 C A ACSM2B Missense_Mutation p.M483I 0.20 tolerated(1) benign(0.046) TCGA-L9-A5IP-01 16 20994060 20994060 A C DNAH3 Missense_Mutation p.D2614E 0.26 tolerated(1) benign(0.004) TCGA-L9-A5IP-01 16 2129153 2129153 G A TSC2 Missense_Mutation p.M1029I 0.19 deleterious(0.01) possibly_damaging(0.824) TCGA-L9-A5IP-01 16 24373181 24373181 C G CACNG3 Silent p.V315V 0.10 TCGA-L9-A5IP-01 16 24580622 24580622 A T RBBP6 Missense_Mutation p.R871W 0.45 deleterious_low_confidence(0) unknown(0) TCGA-L9-A5IP-01 16 2881822 2881822 T A ZG16B Missense_Mutation p.W97R 0.25 deleterious(0) probably_damaging(1) TCGA-L9-A5IP-01 16 3100339 3100339 G A MMP25 Missense_Mutation p.M151I 0.11 tolerated(0.36) benign(0.003) TCGA-L9-A5IP-01 16 31373186 31373186 G T ITGAX Nonsense_Mutation p.E348* 0.16 TCGA-L9-A5IP-01 16 3187420 3187420 C T ZNF213 Missense_Mutation p.R47C 0.06 deleterious(0.05) benign(0.21) TCGA-L9-A5IP-01 16 3433208 3433208 C T ZSCAN32 Missense_Mutation p.G368R 0.44 deleterious(0.05) probably_damaging(0.953) TCGA-L9-A5IP-01 16 47684742 47684742 A G PHKB Silent p.R627R 0.40 TCGA-L9-A5IP-01 16 4924790 4924790 C A UBN1 Silent p.P793P 0.33 TCGA-L9-A5IP-01 16 52484374 52484374 G A TOX3 Missense_Mutation p.R165C 0.14 deleterious(0.01) possibly_damaging(0.543) TCGA-L9-A5IP-01 16 56396158 56396162 GCCGG ACCCGC AMFR 3'UTR 0.33 TCGA-L9-A5IP-01 16 56534866 56534866 T A BBS2 Missense_Mutation p.S433C 0.47 deleterious(0.02) possibly_damaging(0.882) TCGA-L9-A5IP-01 16 65006883 65006883 A C CDH11 Silent p.G438G 0.26 TCGA-L9-A5IP-01 16 66850883 66850883 C A NAE1 Missense_Mutation p.D245Y 0.14 deleterious(0) benign(0.201) TCGA-L9-A5IP-01 16 67693452 67693452 C A ACD Missense_Mutation p.R220L 0.29 tolerated(0.3) benign(0.004) TCGA-L9-A5IP-01 16 70935012 70935012 A G HYDIN Silent p.T2981T 0.37 TCGA-L9-A5IP-01 16 74943406 74943406 G A WDR59 Silent p.C545C 0.41 TCGA-L9-A5IP-01 16 76556103 76556103 G T CNTNAP4 Missense_Mutation p.A829S 0.15 deleterious(0.02) possibly_damaging(0.849) TCGA-L9-A5IP-01 16 88902618 88902618 G A GALNS Silent p.I208I 0.21 TCGA-L9-A5IP-01 16 89653122 89653122 C G CPNE7 Silent p.R350R 0.40 TCGA-L9-A5IP-01 16 9210856 9210856 A G C16orf72 3'UTR 0.52 TCGA-L9-A5IP-01 17 29576001 29576001 G T NF1 Splice_Site p.X1325_splice 0.56 TCGA-L9-A5IP-01 17 3194985 3194985 G T OR3A1 Missense_Mutation p.P298T 0.53 tolerated(0.07) benign(0.021) TCGA-L9-A5IP-01 17 33680452 33680452 C A SLFN11 Missense_Mutation p.A609S 0.40 deleterious(0) probably_damaging(0.997) TCGA-L9-A5IP-01 17 38508184 38508184 G C RARA Missense_Mutation p.K164N 0.75 deleterious(0.01) possibly_damaging(0.776) TCGA-L9-A5IP-01 17 46629555 46629555 G - HOXB3 Frame_Shift_Del p.A95Hfs*39 0.37 TCGA-L9-A5IP-01 17 5998510 5998510 C A WSCD1 Silent p.T272T 0.47 TCGA-L9-A5IP-01 17 64210681 64210681 A G APOH Missense_Mutation p.L291P 0.53 tolerated(0.12) benign(0.027) TCGA-L9-A5IP-01 17 6939726 6939726 G A SLC16A13 Missense_Mutation p.D9N 0.52 deleterious(0) possibly_damaging(0.634) TCGA-L9-A5IP-01 17 75484377 75484377 C T SEPT9 Silent p.F366F 0.47 TCGA-L9-A5IP-01 17 7577082 7577082 C T TP53 Missense_Mutation p.E286K 0.60 deleterious(0) probably_damaging(0.982) TCGA-L9-A5IP-01 18 13885349 13885349 C A MC2R Missense_Mutation p.A57S 0.47 tolerated(1) benign(0.001) TCGA-L9-A5IP-01 18 25591825 25591825 A T CDH2 Silent p.P177P 0.54 TCGA-L9-A5IP-01 18 28916336 28916336 T A DSG1 Missense_Mutation p.M342K 0.60 deleterious(0.01) benign(0.044) TCGA-L9-A5IP-01 18 30977123 30977123 C G CCDC178 Missense_Mutation p.R36S 0.63 tolerated(0.74) benign(0.004) TCGA-L9-A5IP-01 18 32407579 32407579 A T DTNA Missense_Mutation p.M342L 0.51 tolerated(0.79) benign(0.003) TCGA-L9-A5IP-01 18 43311144 43311144 A T SLC14A1 Missense_Mutation p.M162L 0.48 deleterious(0.01) benign(0) TCGA-L9-A5IP-01 18 54385269 54385269 A G WDR7 Silent p.K551K 0.57 TCGA-L9-A5IP-01 18 74701982 74701982 C T MBP Missense_Mutation p.G71D 0.50 deleterious(0) probably_damaging(0.992) TCGA-L9-A5IP-01 18 76752256 76752256 C T SALL3 Missense_Mutation p.P89S 0.45 tolerated(0.66) unknown(0) TCGA-L9-A5IP-01 18 76754343 76754343 C A SALL3 Silent p.A784A 0.39 TCGA-L9-A5IP-01 18 905328 905328 G T ADCYAP1 5'UTR 0.57 TCGA-L9-A5IP-01 19 1063638 1063638 G T ABCA7 Silent p.T1936T 0.42 TCGA-L9-A5IP-01 19 10655803 10655803 A T ATG4D Nonsense_Mutation p.R164* 0.51 TCGA-L9-A5IP-01 19 11541732 11541732 A T CCDC151 Missense_Mutation p.L118Q 0.40 tolerated(0.09) benign(0.189) TCGA-L9-A5IP-01 19 14083554 14083554 C A RFX1 Splice_Site p.X438_splice 0.48 TCGA-L9-A5IP-01 19 15754817 15754817 G T CYP4F3 Intron 0.51 TCGA-L9-A5IP-01 19 16000280 16000280 C A CYP4F2 Missense_Mutation p.A291S 0.49 tolerated(0.14) benign(0.038) TCGA-L9-A5IP-01 19 17056415 17056415 C A CPAMD8 Missense_Mutation p.A960S 0.53 tolerated(0.52) benign(0.034) TCGA-L9-A5IP-01 19 18260454 18260454 G C MAST3 Missense_Mutation p.G1283A 0.40 tolerated_low_confidence(0.12) benign(0.02) TCGA-L9-A5IP-01 19 23405963 23405963 C A ZNF724P Nonsense_Mutation p.G362* 0.38 TCGA-L9-A5IP-01 19 31767983 31767983 G T TSHZ3 Missense_Mutation p.L906I 0.69 deleterious(0) probably_damaging(0.996) TCGA-L9-A5IP-01 19 36000829 36000829 C G DMKN Missense_Mutation p.G341A 0.61 tolerated(0.5) unknown(0) TCGA-L9-A5IP-01 19 39361726 39361726 T A RINL Missense_Mutation p.H198L 0.73 tolerated(0.19) benign(0.001) TCGA-L9-A5IP-01 19 43359769 43359769 C A PSG10P RNA 0.60 TCGA-L9-A5IP-01 19 48636319 48636319 G T LIG1 Silent p.R549R 0.61 TCGA-L9-A5IP-01 19 50473733 50473733 C G SIGLEC16 RNA 0.38 TCGA-L9-A5IP-01 19 53383961 53383961 T A ZNF320 Missense_Mutation p.Q473L 0.68 deleterious(0.03) benign(0.102) TCGA-L9-A5IP-01 19 54313651 54313651 C A NLRP12 Missense_Mutation p.G421V 0.64 deleterious(0) probably_damaging(1) TCGA-L9-A5IP-01 19 56972080 56972080 A G ZNF667 Silent p.N46N 0.70 TCGA-L9-A5IP-01 19 57326400 57326400 C A PEG3 Missense_Mutation p.S1137I 0.65 tolerated(0.08) benign(0.374) TCGA-L9-A5IP-01 19 5754202 5754202 G T CATSPERD Missense_Mutation p.Q408H 0.55 deleterious(0.05) benign(0.015) TCGA-L9-A5IP-01 19 8137968 8137968 C A FBN3 Missense_Mutation p.G2639V 0.44 deleterious(0) probably_damaging(1) TCGA-L9-A5IP-01 19 9237510 9237510 C A OR7G3 Missense_Mutation p.M39I 0.57 tolerated(0.29) benign(0.001) TCGA-L9-A5IP-01 19 9579814 9579814 A T ZNF560 Missense_Mutation p.N193K 0.41 tolerated(0.93) benign(0.035) TCGA-L9-A5IP-01 1 1120494 1120494 G T TTLL10 Intron 0.62 TCGA-L9-A5IP-01 1 12939873 12939873 T A PRAMEF4 Missense_Mutation p.E310V 0.43 deleterious(0) probably_damaging(0.987) TCGA-L9-A5IP-01 1 149877476 149877476 A T SV2A Missense_Mutation p.N667K 0.16 deleterious(0) probably_damaging(0.997) TCGA-L9-A5IP-01 1 152129128 152129128 A T RPTN Silent p.P149P 0.55 TCGA-L9-A5IP-01 1 152285608 152285608 C T FLG Missense_Mutation p.G585E 0.16 probably_damaging(0.986) TCGA-L9-A5IP-01 1 152732688 152732688 C A KPRP Missense_Mutation p.F208L 0.10 tolerated_low_confidence(0.51) benign(0.034) TCGA-L9-A5IP-01 1 153012657 153012657 G C SPRR2D Missense_Mutation p.P56A 0.51 tolerated_low_confidence(0.3) unknown(0) TCGA-L9-A5IP-01 1 154942593 154942593 T A SHC1 Missense_Mutation p.H137L 0.08 tolerated(0.18) benign(0.011) TCGA-L9-A5IP-01 1 155722195 155722195 G T GON4L Missense_Mutation p.S2009Y 0.14 tolerated_low_confidence(0.09) possibly_damaging(0.781) TCGA-L9-A5IP-01 1 158592859 158592859 C G SPTA1 Missense_Mutation p.A2012P 0.17 tolerated(0.27) probably_damaging(0.983) TCGA-L9-A5IP-01 1 159558377 159558377 C T APCS Missense_Mutation p.P184L 0.17 deleterious(0.01) benign(0.198) TCGA-L9-A5IP-01 1 159803089 159803089 G A SLAMF8 Silent p.V237V 0.16 TCGA-L9-A5IP-01 1 160393851 160393851 G T VANGL2 Silent p.V361V 0.10 TCGA-L9-A5IP-01 1 165173273 165173273 G T LMX1A Silent p.A331A 0.44 TCGA-L9-A5IP-01 1 165397966 165397966 G T RXRG Missense_Mutation p.P96H 0.67 tolerated(0.07) possibly_damaging(0.478) TCGA-L9-A5IP-01 1 169510556 169510556 G T F5 Missense_Mutation p.L1258I 0.17 tolerated_low_confidence(0.07) benign(0.024) TCGA-L9-A5IP-01 1 169510958 169510958 C T F5 Missense_Mutation p.E1124K 0.59 deleterious(0.03) benign(0.272) TCGA-L9-A5IP-01 1 17326519 17326519 C T ATP13A2 Silent p.E342E 0.50 TCGA-L9-A5IP-01 1 175355369 175355369 G T TNR Missense_Mutation p.P526T 0.24 tolerated(0.09) probably_damaging(1) TCGA-L9-A5IP-01 1 17682583 17682583 G A PADI4 Silent p.V472V 0.59 TCGA-L9-A5IP-01 1 177199068 177199068 G T BRINP2 Missense_Mutation p.W19L 0.61 tolerated_low_confidence(0.08) possibly_damaging(0.641) TCGA-L9-A5IP-01 1 185939571 185939571 G C HMCN1 Missense_Mutation p.V773L 0.13 probably_damaging(0.98) TCGA-L9-A5IP-01 1 186276141 186276141 C A PRG4 Silent p.T430T 0.59 TCGA-L9-A5IP-01 1 186415603 186415603 A T PDC Silent p.P56P 0.62 TCGA-L9-A5IP-01 1 214795485 214795485 G T CENPF Missense_Mutation p.G310V 0.12 possibly_damaging(0.73) TCGA-L9-A5IP-01 1 215793773 215793773 G T KCTD3 Missense_Mutation p.R754M 0.60 deleterious_low_confidence(0) benign(0.299) TCGA-L9-A5IP-01 1 215821043 215821043 G C USH2A Missense_Mutation p.P4871R 0.53 benign(0.2) TCGA-L9-A5IP-01 1 215821044 215821044 G T USH2A Missense_Mutation p.P4871T 0.52 benign(0.148) TCGA-L9-A5IP-01 1 224468853 224468853 G A NVL Missense_Mutation p.S645F 0.25 deleterious(0) probably_damaging(0.999) TCGA-L9-A5IP-01 1 22816548 22816549 GG - ZBTB40 Frame_Shift_Del p.R36Sfs*19 0.28 TCGA-L9-A5IP-01 1 228486403 228486403 A T OBSCN Missense_Mutation p.T4399S 0.09 benign(0.348) TCGA-L9-A5IP-01 1 228525997 228525997 C G OBSCN Missense_Mutation p.P6627A 0.44 probably_damaging(0.999) TCGA-L9-A5IP-01 1 235295031 235295031 T C RBM34 Silent p.K430K 0.56 TCGA-L9-A5IP-01 1 237791128 237791128 C T RYR2 Missense_Mutation p.S2063F 0.61 probably_damaging(0.999) TCGA-L9-A5IP-01 1 247587695 247587695 C T NLRP3 Missense_Mutation p.P317L 0.14 tolerated(0.06) benign(0.028) TCGA-L9-A5IP-01 1 247592948 247592948 A T NLRP3 Missense_Mutation p.S740C 0.62 deleterious(0) possibly_damaging(0.612) TCGA-L9-A5IP-01 1 248366714 248366714 G - OR2M3 Frame_Shift_Del p.A116Lfs*15 0.13 TCGA-L9-A5IP-01 1 248756420 248756420 G C OR2T10 Missense_Mutation p.S217C 0.79 deleterious(0) probably_damaging(0.998) TCGA-L9-A5IP-01 1 27721047 27721047 C G GPR3 Missense_Mutation p.L249V 0.46 tolerated(0.22) possibly_damaging(0.759) TCGA-L9-A5IP-01 1 33291987 33291987 G T S100PBP Missense_Mutation p.R96L 0.50 deleterious(0) benign(0.002) TCGA-L9-A5IP-01 1 39376991 39376991 G A RHBDL2 Intron 0.76 TCGA-L9-A5IP-01 1 54417760 54417760 G T LRRC42 Missense_Mutation p.A30S 0.54 tolerated(0.66) benign(0.077) TCGA-L9-A5IP-01 1 70758174 70758174 G A ANKRD13C Missense_Mutation p.S371L 0.61 deleterious(0) probably_damaging(0.925) TCGA-L9-A5IP-01 1 79094666 79094666 G T IFI44L Missense_Mutation p.R170M 0.54 deleterious(0) possibly_damaging(0.805) TCGA-L9-A5IP-01 1 89401876 89401876 T A CCBL2 Missense_Mutation p.Q452L 0.70 deleterious(0.01) benign(0.02) TCGA-L9-A5IP-01 20 14306368 14306368 C A FLRT3 Missense_Mutation p.Q595H 0.22 deleterious(0.02) probably_damaging(0.954) TCGA-L9-A5IP-01 20 1538276 1538276 G T RP4-576H24.4 Intron 0.41 TCGA-L9-A5IP-01 20 2591220 2591220 C A TMC2 Silent p.A523A 0.35 TCGA-L9-A5IP-01 20 30037910 30037910 G C DEFB123 Missense_Mutation p.C46S 0.54 deleterious(0) probably_damaging(0.989) TCGA-L9-A5IP-01 20 3090849 3090849 C A UBOX5 Missense_Mutation p.R510L 0.35 deleterious(0) probably_damaging(1) TCGA-L9-A5IP-01 20 57768659 57768659 C A ZNF831 Missense_Mutation p.P862H 0.36 tolerated(0.17) possibly_damaging(0.818) TCGA-L9-A5IP-01 21 22790792 22790792 G T NCAM2 Splice_Site p.X462_splice 0.49 TCGA-L9-A5IP-01 21 34059360 34059360 T C SYNJ1 Silent p.L331L 0.55 TCGA-L9-A5IP-01 21 43706010 43706010 A T ABCG1 Silent p.G293G 0.54 TCGA-L9-A5IP-01 21 46011777 46011777 G T KRTAP10-6 Missense_Mutation p.Q197K 0.45 tolerated(0.31) unknown(0) TCGA-L9-A5IP-01 22 17072826 17072826 C A CCT8L2 Silent p.V205V 0.38 TCGA-L9-A5IP-01 22 18374335 18374335 C A MICAL3 Missense_Mutation p.G537V 0.45 probably_damaging(0.995) TCGA-L9-A5IP-01 22 29763209 29763209 G T AP1B1 Silent p.T8T 0.23 TCGA-L9-A5IP-01 22 29885359 29885359 A T NEFH Missense_Mutation p.E577V 0.47 deleterious(0.02) unknown(0) TCGA-L9-A5IP-01 22 37333998 37333998 C A CSF2RB Missense_Mutation p.D716E 0.45 tolerated(0.05) benign(0.339) TCGA-L9-A5IP-01 22 45197957 45197957 G T ARHGAP8 Missense_Mutation p.G149V 0.54 deleterious(0.01) probably_damaging(1) TCGA-L9-A5IP-01 2 102992386 102992386 T G IL18R1 Missense_Mutation p.L163R 0.31 tolerated(0.54) possibly_damaging(0.697) TCGA-L9-A5IP-01 2 105665766 105665766 G A MRPS9 Missense_Mutation p.M91I 0.35 tolerated(0.08) benign(0.41) TCGA-L9-A5IP-01 2 107459940 107459940 G T ST6GAL2 Missense_Mutation p.A165D 0.34 benign(0.012) TCGA-L9-A5IP-01 2 125504875 125504875 C A CNTNAP5 Missense_Mutation p.P715H 0.34 deleterious(0) probably_damaging(0.977) TCGA-L9-A5IP-01 2 130898790 130898790 C A CCDC74B Missense_Mutation p.E208D 0.20 deleterious(0.05) benign(0.05) TCGA-L9-A5IP-01 2 141245249 141245249 G T LRP1B Silent p.I3060I 0.32 TCGA-L9-A5IP-01 2 141751625 141751625 C A LRP1B Silent p.R861R 0.30 TCGA-L9-A5IP-01 2 152534207 152534207 C G NEB Missense_Mutation p.V1216L 0.32 possibly_damaging(0.742) TCGA-L9-A5IP-01 2 166747087 166747087 C A TTC21B Missense_Mutation p.W1055C 0.35 deleterious(0) probably_damaging(0.999) TCGA-L9-A5IP-01 2 17697572 17697572 C A RAD51AP2 Missense_Mutation p.R704I 0.32 deleterious(0) benign(0.243) TCGA-L9-A5IP-01 2 177034016 177034016 C G HOXD3 Silent p.S58S 0.38 TCGA-L9-A5IP-01 2 182322475 182322475 C A ITGA4 Missense_Mutation p.R32S 0.35 tolerated(0.79) benign(0.003) TCGA-L9-A5IP-01 2 186678510 186678513 AAGT - FSIP2 Frame_Shift_Del p.E6778Afs*15 0.41 TCGA-L9-A5IP-01 2 187615994 187615994 G A FAM171B Silent p.G286G 0.14 TCGA-L9-A5IP-01 2 202625946 202625946 G A ALS2 Silent p.C257C 0.39 TCGA-L9-A5IP-01 2 220089808 220089808 A G ATG9A Silent p.A167A 0.52 TCGA-L9-A5IP-01 2 228884095 228884095 G T SPHKAP Missense_Mutation p.P492H 0.45 deleterious(0.02) possibly_damaging(0.75) TCGA-L9-A5IP-01 2 240033226 240033226 C A HDAC4 Silent p.T653T 0.50 TCGA-L9-A5IP-01 2 241569759 241569759 C T GPR35 Silent p.P161P 0.47 TCGA-L9-A5IP-01 2 27804327 27804327 C A C2orf16 Missense_Mutation p.L1630I 0.40 tolerated(0.39) benign(0.019) TCGA-L9-A5IP-01 2 61505327 61505327 T C USP34 Silent p.P1802P 0.14 TCGA-L9-A5IP-01 2 70122235 70122235 G C SNRNP27 Missense_Mutation p.R15P 0.41 deleterious_low_confidence(0) unknown(0) TCGA-L9-A5IP-01 2 71058896 71058896 C T CD207 Missense_Mutation p.A258T 0.50 tolerated(0.23) benign(0.016) TCGA-L9-A5IP-01 2 71368464 71368464 G A MPHOSPH10 Missense_Mutation p.E471K 0.44 deleterious(0) possibly_damaging(0.745) TCGA-L9-A5IP-01 2 84652634 84652634 C A SUCLG1 Nonsense_Mutation p.G307* 0.16 TCGA-L9-A5IP-01 2 89986393 89986393 G T IGKV2D-29 Missense_Mutation p.W14C 0.10 deleterious(0.05) benign(0.17) TCGA-L9-A5IP-01 2 95691607 95691607 G T MAL Missense_Mutation p.D24Y 0.78 deleterious(0.02) probably_damaging(0.999) TCGA-L9-A5IP-01 2 95950752 95950752 G T PROM2 Silent p.L588L 0.21 TCGA-L9-A5IP-01 3 108565943 108565943 C A TRAT1 Missense_Mutation p.P61T 0.27 deleterious(0) probably_damaging(1) TCGA-L9-A5IP-01 3 12198429 12198429 G A TIMP4 Silent p.F81F 0.55 TCGA-L9-A5IP-01 3 14731538 14731538 C A C3orf20 Missense_Mutation p.N220K 0.57 deleterious(0.01) probably_damaging(0.957) TCGA-L9-A5IP-01 3 179050899 179050899 G T ZNF639 Missense_Mutation p.A98S 0.45 tolerated(0.82) benign(0) TCGA-L9-A5IP-01 3 184071977 184071977 C A CLCN2 Missense_Mutation p.A545S 0.62 tolerated(0.09) probably_damaging(0.964) TCGA-L9-A5IP-01 3 186336322 186336322 C A AHSG Intron 0.58 TCGA-L9-A5IP-01 3 195009889 195009889 C A ACAP2 Missense_Mutation p.S712I 0.52 deleterious(0.01) benign(0.003) TCGA-L9-A5IP-01 3 3196462 3196462 T C CRBN Silent p.L268L 0.47 TCGA-L9-A5IP-01 3 39227769 39227769 C A XIRP1 Missense_Mutation p.Q1056H 0.68 deleterious(0) possibly_damaging(0.862) TCGA-L9-A5IP-01 3 49949441 49949441 G A MON1A Missense_Mutation p.A141V 0.47 tolerated(0.05) probably_damaging(0.997) TCGA-L9-A5IP-01 3 50103695 50103695 G T RBM6 Silent p.L901L 0.42 TCGA-L9-A5IP-01 3 57130450 57130450 C A IL17RD Missense_Mutation p.D731Y 0.53 deleterious_low_confidence(0.01) possibly_damaging(0.653) TCGA-L9-A5IP-01 3 8669398 8669398 C - SSUH2 Frame_Shift_Del p.S221Pfs*113 0.39 TCGA-L9-A5IP-01 3 9475631 9475631 T A SETD5 Nonsense_Mutation p.Y58* 0.62 TCGA-L9-A5IP-01 4 114254280 114254280 A T ANK2 Missense_Mutation p.S1099C 0.58 probably_damaging(0.998) TCGA-L9-A5IP-01 4 129913322 129913322 C A SCLT1 Missense_Mutation p.R229M 0.50 deleterious(0) probably_damaging(0.998) TCGA-L9-A5IP-01 4 170028263 170028263 C A SH3RF1 Nonsense_Mutation p.E745* 0.68 TCGA-L9-A5IP-01 4 17586685 17586685 G T LAP3 Missense_Mutation p.M210I 0.34 tolerated(0.24) benign(0.025) TCGA-L9-A5IP-01 4 177077239 177077239 G A WDR17 Missense_Mutation p.A848T 0.46 deleterious(0) benign(0.012) TCGA-L9-A5IP-01 4 4190681 4190681 A T OTOP1 Missense_Mutation p.F563Y 0.16 deleterious(0) probably_damaging(0.966) TCGA-L9-A5IP-01 4 49030720 49030720 A T CWH43 Silent p.L447L 0.35 TCGA-L9-A5IP-01 4 69693267 69693267 G A UGT2B10 Splice_Site p.X436_splice 0.49 TCGA-L9-A5IP-01 4 71892385 71892385 C G DCK Silent p.T223T 0.40 TCGA-L9-A5IP-01 4 96123936 96123936 C G UNC5C Silent p.S694S 0.67 TCGA-L9-A5IP-01 5 108281830 108281830 G T FER Splice_Site p.X413_splice 0.44 TCGA-L9-A5IP-01 5 113699675 113699675 G T KCNN2 Missense_Mutation p.V187L 0.66 tolerated(0.77) benign(0.047) TCGA-L9-A5IP-01 5 126769088 126769088 G T MEGF10 Missense_Mutation p.R576L 0.48 tolerated(0.75) benign(0.116) TCGA-L9-A5IP-01 5 140476716 140476716 C A PCDHB2 Missense_Mutation p.A781E 0.45 tolerated_low_confidence(0.34) benign(0.001) TCGA-L9-A5IP-01 5 140516336 140516336 C G PCDHB5 Silent p.V440V 0.52 TCGA-L9-A5IP-01 5 151784181 151784181 C A NMUR2 Missense_Mutation p.R165M 0.50 deleterious(0) probably_damaging(0.937) TCGA-L9-A5IP-01 5 156659381 156659381 G T ITK Missense_Mutation p.A249S 0.41 tolerated(0.27) probably_damaging(0.984) TCGA-L9-A5IP-01 5 158603785 158603785 C A RNF145 Missense_Mutation p.R189L 0.42 deleterious(0) probably_damaging(0.992) TCGA-L9-A5IP-01 5 169023660 169023660 A T SPDL1 Missense_Mutation p.E329D 0.54 deleterious(0) probably_damaging(0.998) TCGA-L9-A5IP-01 5 22078699 22078699 C A CDH12 Missense_Mutation p.Q29H 0.29 tolerated(0.28) benign(0.094) TCGA-L9-A5IP-01 5 31323349 31323349 C A CDH6 Missense_Mutation p.D769E 0.37 tolerated(0.48) benign(0.03) TCGA-L9-A5IP-01 5 33576944 33576944 C A ADAMTS12 Missense_Mutation p.G1063C 0.28 tolerated(0.05) benign(0.293) TCGA-L9-A5IP-01 5 35659161 35659161 G T SPEF2 Missense_Mutation p.R340L 0.41 deleterious(0) probably_damaging(0.997) TCGA-L9-A5IP-01 5 35876181 35876181 C A IL7R Missense_Mutation p.Q325K 0.41 tolerated(0.05) possibly_damaging(0.858) TCGA-L9-A5IP-01 5 43245938 43245938 C A NIM1K Silent p.R21R 0.34 TCGA-L9-A5IP-01 5 43245939 43245939 G T NIM1K Missense_Mutation p.R21L 0.33 tolerated_low_confidence(0.08) benign(0.036) TCGA-L9-A5IP-01 5 5464202 5464202 G A KIAA0947 Silent p.Q1585Q 0.21 TCGA-L9-A5IP-01 5 71524108 71524108 C A MRPS27 Missense_Mutation p.G227C 0.43 deleterious(0) probably_damaging(0.998) TCGA-L9-A5IP-01 5 82816254 82816254 G T VCAN Missense_Mutation p.S710I 0.43 deleterious(0.03) benign(0.07) TCGA-L9-A5IP-01 6 117203541 117203541 G C RFX6 Missense_Mutation p.Q172H 0.41 deleterious(0.01) probably_damaging(1) TCGA-L9-A5IP-01 6 126206311 126206311 G C NCOA7 Missense_Mutation p.V236L 0.47 deleterious(0) probably_damaging(0.999) TCGA-L9-A5IP-01 6 152738043 152738043 C G SYNE1 Missense_Mutation p.Q1843H 0.53 probably_damaging(0.994) TCGA-L9-A5IP-01 6 169628344 169628344 C A THBS2 Missense_Mutation p.Q764H 0.62 deleterious(0) probably_damaging(0.999) TCGA-L9-A5IP-01 6 25862652 25862652 G T SLC17A3 Missense_Mutation p.R38S 0.41 deleterious(0) probably_damaging(0.998) TCGA-L9-A5IP-01 6 304631 304631 C A DUSP22 Missense_Mutation p.L9M 0.23 deleterious(0.03) benign(0.342) TCGA-L9-A5IP-01 6 32812243 32812243 C T PSMB8 5'Flank 0.48 TCGA-L9-A5IP-01 6 33555384 33555384 A C GGNBP1 Intron 0.39 TCGA-L9-A5IP-01 6 38773340 38773340 G A DNAH8 Missense_Mutation p.D823N 0.50 benign(0.002) TCGA-L9-A5IP-01 6 47649364 47649364 G T GPR111 Nonsense_Mutation p.E357* 0.52 TCGA-L9-A5IP-01 6 50696644 50696644 C T TFAP2D Missense_Mutation p.S225F 0.45 deleterious(0.01) probably_damaging(0.993) TCGA-L9-A5IP-01 6 50791352 50791352 C G TFAP2B Missense_Mutation p.P105R 0.61 deleterious(0.02) benign(0.023) TCGA-L9-A5IP-01 6 54805457 54805457 C A FAM83B Missense_Mutation p.S563Y 0.63 tolerated(0.09) probably_damaging(0.999) TCGA-L9-A5IP-01 6 6152184 6152184 T A F13A1 Splice_Site p.X637_splice 0.46 TCGA-L9-A5IP-01 6 82924269 82924269 T C IBTK Missense_Mutation p.M627V 0.48 tolerated(0.16) benign(0.007) TCGA-L9-A5IP-01 7 100388661 100388661 C A ZAN Silent p.A2484A 0.35 TCGA-L9-A5IP-01 7 105207627 105207627 G T RINT1 Missense_Mutation p.V750L 0.39 tolerated(0.13) benign(0.053) TCGA-L9-A5IP-01 7 106515167 106515167 G T PIK3CG Missense_Mutation p.K770N 0.26 tolerated(0.13) benign(0.209) TCGA-L9-A5IP-01 7 107746307 107746307 G A LAMB4 Silent p.R275R 0.33 TCGA-L9-A5IP-01 7 107823258 107823258 G C NRCAM Missense_Mutation p.S804C 0.28 tolerated(0.05) probably_damaging(0.999) TCGA-L9-A5IP-01 7 11675887 11675887 C G THSD7A Missense_Mutation p.E298Q 0.45 tolerated(0.07) possibly_damaging(0.45) TCGA-L9-A5IP-01 7 126173753 126173753 T A GRM8 Missense_Mutation p.R561S 0.47 tolerated(0.15) possibly_damaging(0.639) TCGA-L9-A5IP-01 7 138732324 138732324 G C ZC3HAV1 3'UTR 0.57 TCGA-L9-A5IP-01 7 142013448 142013448 G T TRBV4-1 Missense_Mutation p.Q101H 0.45 tolerated(0.07) benign(0.058) TCGA-L9-A5IP-01 7 142021335 142021335 G T TRBV5-1 Silent p.S105S 0.38 TCGA-L9-A5IP-01 7 142498994 142498994 C A TRBC2 Missense_Mutation p.R91S 0.25 tolerated(0.08) possibly_damaging(0.726) TCGA-L9-A5IP-01 7 149430594 149430594 G T KRBA1 Missense_Mutation p.A850S 0.70 tolerated(0.08) benign(0.038) TCGA-L9-A5IP-01 7 150324883 150324883 C A GIMAP6 Missense_Mutation p.W268L 0.60 tolerated(0.28) benign(0.004) TCGA-L9-A5IP-01 7 150554006 150554006 C A AOC1 Missense_Mutation p.L150I 0.57 tolerated(0.08) possibly_damaging(0.536) TCGA-L9-A5IP-01 7 158902543 158902543 C A VIPR2 Silent p.V73V 0.46 TCGA-L9-A5IP-01 7 27203171 27203171 C A HOXA9 3'UTR 0.32 TCGA-L9-A5IP-01 7 27204533 27204533 T A HOXA9 Missense_Mutation p.N182Y 0.40 deleterious(0.03) possibly_damaging(0.601) TCGA-L9-A5IP-01 7 27565772 27565772 C A HIBADH 3'UTR 0.50 TCGA-L9-A5IP-01 7 30492365 30492365 C T NOD1 Missense_Mutation p.R223Q 0.33 tolerated(0.54) benign(0.008) TCGA-L9-A5IP-01 7 31829755 31829755 C G PDE1C Intron 0.40 TCGA-L9-A5IP-01 7 34118765 34118765 G A BMPER Missense_Mutation p.D459N 0.32 deleterious(0.01) benign(0.331) TCGA-L9-A5IP-01 7 38514930 38514930 C T AMPH Splice_Site p.X197_splice 0.31 TCGA-L9-A5IP-01 7 45223072 45223072 G T RAMP3 3'UTR 0.13 TCGA-L9-A5IP-01 7 47842935 47842935 C A PKD1L1 Missense_Mutation p.R2612L 0.27 deleterious(0) probably_damaging(0.976) TCGA-L9-A5IP-01 7 47853559 47853559 C A PKD1L1 Missense_Mutation p.Q2381H 0.30 deleterious(0) probably_damaging(0.948) TCGA-L9-A5IP-01 7 48443349 48443349 G T ABCA13 Missense_Mutation p.K3981N 0.36 probably_damaging(0.971) TCGA-L9-A5IP-01 7 53103913 53103913 C A POM121L12 Missense_Mutation p.S183R 0.38 tolerated(0.72) benign(0.042) TCGA-L9-A5IP-01 7 5347821 5347821 G A TNRC18 Silent p.S2941S 0.27 TCGA-L9-A5IP-01 7 63538632 63538632 G T ZNF727 Missense_Mutation p.G402V 0.18 deleterious(0) probably_damaging(0.998) TCGA-L9-A5IP-01 7 63720681 63720681 A G ZNF679 Missense_Mutation p.Y41C 0.37 deleterious(0) probably_damaging(0.999) TCGA-L9-A5IP-01 7 64023457 64023457 C A ZNF680 5'UTR 0.50 TCGA-L9-A5IP-01 7 64023458 64023458 C A ZNF680 5'UTR 0.50 TCGA-L9-A5IP-01 7 71571194 71571194 C A CALN1 Missense_Mutation p.L110F 0.28 deleterious(0) probably_damaging(0.986) TCGA-L9-A5IP-01 7 72732902 72732902 G T TRIM50 Silent p.A215A 0.24 TCGA-L9-A5IP-01 7 76984892 76984893 - A GSAP Frame_Shift_Ins p.C367Lfs*10 0.32 TCGA-L9-A5IP-01 7 77708276 77708276 C A MAGI2 Missense_Mutation p.V1232F 0.27 deleterious(0) probably_damaging(0.997) TCGA-L9-A5IP-01 7 81334706 81334706 C T HGF Silent p.E670E 0.30 TCGA-L9-A5IP-01 7 81334995 81334995 C A HGF Missense_Mutation p.S611I 0.23 tolerated(0.46) benign(0.102) TCGA-L9-A5IP-01 7 91729073 91729073 A T AKAP9 Missense_Mutation p.T3596S 0.35 probably_damaging(0.997) TCGA-L9-A5IP-01 7 96653825 96653825 C A DLX5 Missense_Mutation p.L37F 0.34 deleterious(0) probably_damaging(0.996) TCGA-L9-A5IP-01 7 98254244 98254244 C A NPTX2 Silent p.A218A 0.35 TCGA-L9-A5IP-01 8 106814906 106814906 G T ZFPM2 Missense_Mutation p.V866L 0.32 tolerated(0.07) probably_damaging(0.997) TCGA-L9-A5IP-01 8 110394726 110394726 A T PKHD1L1 Missense_Mutation p.S115C 0.36 deleterious(0.01) probably_damaging(0.994) TCGA-L9-A5IP-01 8 113678631 113678631 G T CSMD3 Silent p.G897G 0.47 TCGA-L9-A5IP-01 8 113988181 113988181 G T CSMD3 Missense_Mutation p.N409K 0.31 tolerated_low_confidence(0.62) benign(0) TCGA-L9-A5IP-01 8 113988244 113988244 A G CSMD3 Silent p.H388H 0.41 TCGA-L9-A5IP-01 8 118169934 118169934 C - SLC30A8 Frame_Shift_Del p.G143Vfs*12 0.24 TCGA-L9-A5IP-01 8 139255198 139255198 G T FAM135B Missense_Mutation p.P219Q 0.29 tolerated(0.52) benign(0.342) TCGA-L9-A5IP-01 8 140630514 140630514 C T KCNK9 Missense_Mutation p.R371Q 0.17 deleterious(0) possibly_damaging(0.59) TCGA-L9-A5IP-01 8 143695036 143695036 G A ARC Silent p.P199P 0.31 TCGA-L9-A5IP-01 8 28695282 28695282 T C INTS9 Missense_Mutation p.I91M 0.62 tolerated(0.14) benign(0.107) TCGA-L9-A5IP-01 8 3263589 3263589 G A CSMD1 Silent p.D742D 0.40 TCGA-L9-A5IP-01 8 52258433 52258433 G T PXDNL Missense_Mutation p.P1326T 0.38 tolerated(0.15) benign(0.15) TCGA-L9-A5IP-01 8 52321784 52321784 C A PXDNL Silent p.T800T 0.31 TCGA-L9-A5IP-01 8 55537727 55537727 A T RP1 Missense_Mutation p.T429S 0.40 tolerated(1) benign(0.005) TCGA-L9-A5IP-01 8 77764436 77764436 C - ZFHX4 Frame_Shift_Del p.T1761Hfs*7 0.20 TCGA-L9-A5IP-01 8 89086951 89086951 C A MMP16 Silent p.V368V 0.37 TCGA-L9-A5IP-01 9 100326344 100326344 A T TMOD1 Missense_Mutation p.K171M 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-L9-A5IP-01 9 109736464 109736464 G T ZNF462 Nonsense_Mutation p.E2248* 0.21 TCGA-L9-A5IP-01 9 114820806 114820806 T C SUSD1 Missense_Mutation p.I671V 0.40 tolerated(0.14) benign(0.021) TCGA-L9-A5IP-01 9 123753526 123753526 T A C5 Missense_Mutation p.R962W 0.45 deleterious(0.01) possibly_damaging(0.825) TCGA-L9-A5IP-01 9 125240158 125240158 G T OR1J1 Silent p.G16G 0.26 TCGA-L9-A5IP-01 9 127561600 127561600 G A OLFML2A Missense_Mutation p.V167M 0.23 tolerated(0.61) benign(0.091) TCGA-L9-A5IP-01 9 131185252 131185252 G T CERCAM Missense_Mutation p.E101D 0.46 tolerated(0.09) benign(0.012) TCGA-L9-A5IP-01 9 131810738 131810738 A T FAM73B Missense_Mutation p.S114C 0.33 tolerated(0.07) benign(0.038) TCGA-L9-A5IP-01 9 133907555 133907555 G A LAMC3 Missense_Mutation p.G268S 0.40 deleterious(0.02) probably_damaging(0.997) TCGA-L9-A5IP-01 9 139289780 139289780 C A SNAPC4 Missense_Mutation p.K147N 0.61 deleterious(0) probably_damaging(0.999) TCGA-L9-A5IP-01 9 139974553 139974553 A G UAP1L1 Missense_Mutation p.I379M 0.42 tolerated(0.17) probably_damaging(0.998) TCGA-L9-A5IP-01 9 140139831 140139831 C T FAM166A Silent p.L150L 0.23 TCGA-L9-A5IP-01 9 18681811 18681811 G A ADAMTSL1 Missense_Mutation p.C448Y 0.55 deleterious(0) probably_damaging(0.992) TCGA-L9-A5IP-01 9 27949481 27949481 G T LINGO2 Missense_Mutation p.H397N 0.62 deleterious(0.03) benign(0.016) TCGA-L9-A5IP-01 9 37719119 37719120 - A FRMPD1 Frame_Shift_Ins p.N155Kfs*9 0.29 TCGA-L9-A5IP-01 9 712851 712851 C T KANK1 Silent p.C695C 0.58 TCGA-L9-A5IP-01 9 94499681 94499681 C G ROR2 Missense_Mutation p.R205P 0.42 deleterious(0.01) possibly_damaging(0.852) TCGA-L9-A5IP-01 9 99694509 99694509 C A NUTM2G Missense_Mutation p.N174K 0.18 tolerated(0.83) possibly_damaging(0.885) TCGA-L9-A5IP-01 X 101096880 101096880 G A NXF5 Silent p.V39V 0.39 TCGA-L9-A5IP-01 X 105165970 105165970 G T NRK Nonsense_Mutation p.E844* 0.64 TCGA-L9-A5IP-01 X 114869240 114869240 T C PLS3 Silent p.H210H 0.31 TCGA-L9-A5IP-01 X 123554632 123554632 G T TENM1 Missense_Mutation p.P1504H 0.41 deleterious(0) probably_damaging(0.995) TCGA-L9-A5IP-01 X 134683730 134683730 A G DDX26B Silent p.L302L 0.48 TCGA-L9-A5IP-01 X 134993753 134993753 A G SAGE1 Missense_Mutation p.H721R 0.49 deleterious(0.01) probably_damaging(0.995) TCGA-L9-A5IP-01 X 148072751 148072751 T A AFF2 Silent p.G1275G 0.51 TCGA-L9-A5IP-01 X 153178960 153178960 G A ARHGAP4 Missense_Mutation p.S450F 0.39 deleterious(0) probably_damaging(0.999) TCGA-L9-A5IP-01 X 153187116 153187116 C G ARHGAP4 Missense_Mutation p.E72Q 0.60 deleterious(0) probably_damaging(0.974) TCGA-L9-A5IP-01 X 30695568 30695568 G T GK Silent p.V112V 0.46 TCGA-L9-A5IP-01 X 34962495 34962495 A T FAM47B Missense_Mutation p.D516V 0.51 deleterious(0.01) possibly_damaging(0.731) TCGA-L9-A5IP-01 X 38144746 38144746 C T RPGR 3'UTR 0.38 TCGA-L9-A5IP-01 X 78216927 78216927 C T P2RY10 Missense_Mutation p.L304F 0.38 deleterious(0) probably_damaging(0.956) TCGA-L9-A5IP-01 X 84526744 84526744 A C ZNF711 Silent p.P732P 0.44 TCGA-L9-A5IP-01 X 86869500 86869500 C A KLHL4 Silent p.A218A 0.18 TCGA-L9-A743-01 10 120354628 120354628 G A PRLHR Silent p.D43D 0.10 TCGA-L9-A743-01 10 33475316 33475316 G A NRP1 Silent p.C721C 0.09 TCGA-L9-A743-01 10 48388725 48388725 G T RBP3 Missense_Mutation p.P718H 0.17 deleterious(0) possibly_damaging(0.893) TCGA-L9-A743-01 10 48413959 48413959 G T GDF2 Missense_Mutation p.D303E 0.11 tolerated(1) benign(0.001) TCGA-L9-A743-01 10 49643090 49643090 G C MAPK8 3'UTR 0.22 TCGA-L9-A743-01 10 50315782 50315782 T A VSTM4 Missense_Mutation p.Q105L 0.07 deleterious(0.05) benign(0.122) TCGA-L9-A743-01 10 52912951 52912951 C T PRKG1 Silent p.I113I 0.12 TCGA-L9-A743-01 10 70451087 70451087 C T TET1 Missense_Mutation p.S1976F 0.12 deleterious(0) probably_damaging(0.994) TCGA-L9-A743-01 10 79793589 79793589 G T RPS24 5'UTR 0.08 TCGA-L9-A743-01 10 91404751 91404751 A G PANK1 Silent p.N103N 0.14 TCGA-L9-A743-01 10 98180778 98180778 C G TLL2 Silent p.V286V 0.06 TCGA-L9-A743-01 11 126333182 126333182 C - KIRREL3 Frame_Shift_Del p.K204Nfs*113 0.25 TCGA-L9-A743-01 11 1275440 1275440 C T MUC5B Silent p.L5112L 0.09 TCGA-L9-A743-01 11 21594816 21594816 G C NELL1 Missense_Mutation p.R748P 0.07 deleterious(0) probably_damaging(0.939) TCGA-L9-A743-01 11 3700797 3700797 C A NUP98 Missense_Mutation p.R1687L 0.15 tolerated(0.29) benign(0.116) TCGA-L9-A743-01 11 55406490 55406490 A G OR4P4 Missense_Mutation p.I219M 0.05 deleterious(0.02) possibly_damaging(0.841) TCGA-L9-A743-01 11 58034405 58034405 C T OR10W1 3'UTR 0.08 TCGA-L9-A743-01 11 58477145 58477145 C A GLYAT 3'UTR 0.23 TCGA-L9-A743-01 11 6623256 6623256 G C RRP8 Missense_Mutation p.Q97E 0.07 deleterious_low_confidence(0.02) benign(0.08) TCGA-L9-A743-01 12 100042057 100042057 C A FAM71C Silent p.G35G 0.14 TCGA-L9-A743-01 12 105388413 105388413 C G C12orf45 Missense_Mutation p.S166C 0.06 deleterious(0) probably_damaging(0.957) TCGA-L9-A743-01 12 13715633 13715633 C - GRIN2B 3'UTR 0.12 TCGA-L9-A743-01 12 64377726 64377726 G C SRGAP1 Splice_Site p.X23_splice 0.09 TCGA-L9-A743-01 12 85623399 85623399 G A LRRIQ1 Missense_Mutation p.E1643K 0.06 deleterious(0.02) possibly_damaging(0.907) TCGA-L9-A743-01 12 88486490 88486490 C A CEP290 Missense_Mutation p.K1143N 0.14 probably_damaging(0.942) TCGA-L9-A743-01 13 103443387 103443387 C A KDELC1 Missense_Mutation p.R316I 0.15 deleterious(0) probably_damaging(1) TCGA-L9-A743-01 13 114290334 114290334 G T TFDP1 Nonsense_Mutation p.E244* 0.06 TCGA-L9-A743-01 13 52598929 52598929 A T ALG11 Missense_Mutation p.N355Y 0.05 deleterious(0.02) benign(0.389) TCGA-L9-A743-01 14 106067970 106067970 C A IGHE Silent p.T32T 0.08 TCGA-L9-A743-01 14 106667740 106667740 C A IGHV3-20 Silent p.L64L 0.09 TCGA-L9-A743-01 14 22363163 22363163 C A TRAV8-4 Silent p.P98P 0.10 TCGA-L9-A743-01 14 50585218 50585218 C A SOS2 Missense_Mutation p.Q1281H 0.09 tolerated_low_confidence(0.39) benign(0) TCGA-L9-A743-01 14 89154735 89154735 A G EML5 Silent p.T874T 0.06 TCGA-L9-A743-01 15 41384296 41384296 C G INO80 Missense_Mutation p.E156Q 0.10 tolerated(0.11) probably_damaging(0.995) TCGA-L9-A743-01 15 43817850 43817850 T A MAP1A Silent p.A1393A 0.07 TCGA-L9-A743-01 15 43817851 43817851 C G MAP1A Missense_Mutation p.L1394V 0.07 possibly_damaging(0.79) TCGA-L9-A743-01 15 52567822 52567822 G A MYO5C Silent p.V181V 0.08 TCGA-L9-A743-01 15 77241577 77241577 C T RCN2 3'UTR 0.10 TCGA-L9-A743-01 15 78757682 78757682 C T IREB2 Missense_Mutation p.P121L 0.07 deleterious(0.03) probably_damaging(1) TCGA-L9-A743-01 15 90210249 90210249 G C PLIN1 Missense_Mutation p.T376S 0.09 tolerated(0.13) benign(0.026) TCGA-L9-A743-01 16 20387405 20387405 G A PDILT Silent p.I176I 0.15 TCGA-L9-A743-01 16 20693630 20693630 G T ACSM1 Missense_Mutation p.L187M 0.11 tolerated(0.06) probably_damaging(0.994) TCGA-L9-A743-01 16 21136508 21136508 G A DNAH3 Silent p.F464F 0.08 TCGA-L9-A743-01 16 2581104 2581104 G T CEMP1 5'UTR 0.11 TCGA-L9-A743-01 16 84163767 84163767 G A HSDL1 Nonsense_Mutation p.Q164* 0.08 TCGA-L9-A743-01 17 19584865 19584865 C T SLC47A2 Missense_Mutation p.R464K 0.20 tolerated(1) benign(0.035) TCGA-L9-A743-01 17 29541542 29541542 A G NF1 Missense_Mutation p.Y489C 0.28 tolerated(0.08) possibly_damaging(0.635) TCGA-L9-A743-01 17 37873784 37873784 C G ERBB2 Intron 0.12 TCGA-L9-A743-01 17 39316848 39316848 C T KRTAP4-4 Silent p.R32R 0.06 TCGA-L9-A743-01 17 40828443 40828443 G T PLEKHH3 Missense_Mutation p.P47T 0.14 deleterious(0.02) unknown(0) TCGA-L9-A743-01 17 42392139 42392139 T A RUNDC3A Missense_Mutation p.D165E 0.26 tolerated(1) benign(0.003) TCGA-L9-A743-01 17 45822238 45822238 G T TBX21 Missense_Mutation p.D372Y 0.11 deleterious(0.03) possibly_damaging(0.67) TCGA-L9-A743-01 17 70120365 70120365 C A SOX9 Missense_Mutation p.A456E 0.14 deleterious(0.01) possibly_damaging(0.548) TCGA-L9-A743-01 17 7577509 7577509 C G TP53 Missense_Mutation p.E258Q 0.13 deleterious(0) probably_damaging(0.96) TCGA-L9-A743-01 17 77755613 77755613 G A CBX2 Intron 0.06 TCGA-L9-A743-01 19 3823279 3823279 C G ZFR2 Missense_Mutation p.D446H 0.07 deleterious(0) probably_damaging(0.982) TCGA-L9-A743-01 19 4323358 4323358 C G FSD1 Missense_Mutation p.F435L 0.15 deleterious(0) probably_damaging(0.916) TCGA-L9-A743-01 19 44988628 44988628 C G ZNF180 Missense_Mutation p.E51Q 0.09 deleterious(0.04) possibly_damaging(0.767) TCGA-L9-A743-01 19 53385180 53385180 C T ZNF320 Missense_Mutation p.E67K 0.04 tolerated(0.06) probably_damaging(0.994) TCGA-L9-A743-01 19 6760967 6760967 T A SH2D3A Missense_Mutation p.D34V 0.27 deleterious(0) probably_damaging(0.971) TCGA-L9-A743-01 19 8922691 8922691 T C ZNF558 Missense_Mutation p.K159E 0.17 deleterious(0) probably_damaging(0.948) TCGA-L9-A743-01 1 109268537 109268537 C G FNDC7 Missense_Mutation p.S341C 0.04 tolerated(0.5) possibly_damaging(0.897) TCGA-L9-A743-01 1 152191339 152191339 A T HRNR Missense_Mutation p.H922Q 0.13 unknown(0) TCGA-L9-A743-01 1 152285036 152285036 G T FLG Missense_Mutation p.Q776K 0.14 benign(0.035) TCGA-L9-A743-01 1 156213653 156213653 C T PAQR6 Silent p.%3D 0.07 TCGA-L9-A743-01 1 158151926 158151926 C A CD1D Missense_Mutation p.Q145K 0.06 tolerated(0.3) benign(0.022) TCGA-L9-A743-01 1 158604378 158604378 A G SPTA1 Silent p.A1840A 0.18 TCGA-L9-A743-01 1 165218670 165218670 C G LMX1A Silent p.L157L 0.07 TCGA-L9-A743-01 1 167517297 167517297 C T CREG1 Missense_Mutation p.G139E 0.08 tolerated(1) benign(0.048) TCGA-L9-A743-01 1 169500092 169500092 C T F5 Missense_Mutation p.E1714K 0.07 tolerated(0.3) benign(0.02) TCGA-L9-A743-01 1 171560832 171560832 C T PRRC2C Missense_Mutation p.S2767L 0.06 benign(0.445) TCGA-L9-A743-01 1 186097255 186097255 G A HMCN1 Missense_Mutation p.G4246S 0.10 probably_damaging(0.999) TCGA-L9-A743-01 1 186275791 186275791 G C PRG4 Missense_Mutation p.E314Q 0.06 probably_damaging(0.971) TCGA-L9-A743-01 1 204438008 204438008 G A PIK3C2B Missense_Mutation p.S308F 0.07 deleterious(0) probably_damaging(0.998) TCGA-L9-A743-01 1 228563506 228563506 T A OBSCN Silent p.I8546I 0.33 TCGA-L9-A743-01 1 237777801 237777801 C A RYR2 Silent p.T1791T 0.26 TCGA-L9-A743-01 1 241761109 241761109 T C OPN3 Missense_Mutation p.Y295C 0.13 deleterious(0.02) possibly_damaging(0.704) TCGA-L9-A743-01 1 248224107 248224107 C A OR2L3 Missense_Mutation p.L42I 0.06 tolerated(0.43) benign(0.012) TCGA-L9-A743-01 1 27706479 27706479 G A CD164L2 3'UTR 0.05 TCGA-L9-A743-01 1 39826587 39826587 A G MACF1 Missense_Mutation p.I2061V 0.11 benign(0.002) TCGA-L9-A743-01 1 78326906 78326906 C T FAM73A Intron 0.19 TCGA-L9-A743-01 1 91840948 91840948 G T HFM1 Missense_Mutation p.A551D 0.08 deleterious(0.01) possibly_damaging(0.544) TCGA-L9-A743-01 20 8755211 8755211 G T PLCB1 Missense_Mutation p.G986C 0.05 deleterious(0.05) benign(0.195) TCGA-L9-A743-01 21 27840852 27840852 G T CYYR1 Missense_Mutation p.P145T 0.14 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-L9-A743-01 21 30698514 30698514 T A BACH1 Missense_Mutation p.F123L 0.10 deleterious(0) probably_damaging(0.978) TCGA-L9-A743-01 21 31720751 31720751 T A KRTAP23-1 Silent p.S58S 0.08 TCGA-L9-A743-01 21 47700447 47700447 T A MCM3AP Nonsense_Mutation p.K496* 0.05 TCGA-L9-A743-01 22 30860877 30860877 G A SEC14L3 Silent p.F198F 0.10 TCGA-L9-A743-01 22 31533867 31533867 G A PLA2G3 Missense_Mutation p.P299S 0.12 tolerated(0.1) benign(0.025) TCGA-L9-A743-01 22 39917917 39917917 C G ATF4 Silent p.L122L 0.10 TCGA-L9-A743-01 2 152402928 152402928 C T NEB Silent p.L6799L 0.08 TCGA-L9-A743-01 2 15467913 15467913 C T NBAS Missense_Mutation p.E1515K 0.06 deleterious(0.04) benign(0.01) TCGA-L9-A743-01 2 164466137 164466137 C T FIGN Silent p.K735K 0.05 TCGA-L9-A743-01 2 166210986 166210986 C G SCN2A Silent p.L1068L 0.07 TCGA-L9-A743-01 2 168097244 168097244 C T XIRP2 Missense_Mutation p.T347I 0.07 possibly_damaging(0.828) TCGA-L9-A743-01 2 172690507 172690507 G C SLC25A12 Missense_Mutation p.L271V 0.05 deleterious(0.02) probably_damaging(0.999) TCGA-L9-A743-01 2 179471877 179471877 C G TTN Missense_Mutation p.E17818Q 0.05 TCGA-L9-A743-01 2 179638805 179638805 C T TTN Missense_Mutation p.D2364N 0.05 TCGA-L9-A743-01 2 184022179 184022179 C T NUP35 Nonsense_Mutation p.Q183* 0.06 TCGA-L9-A743-01 2 190329914 190329914 G T WDR75 Missense_Mutation p.R408L 0.12 tolerated(0.1) benign(0.034) TCGA-L9-A743-01 2 190329915 190329915 G T WDR75 Silent p.R408R 0.12 TCGA-L9-A743-01 2 33518340 33518340 C A LTBP1 Missense_Mutation p.H1076N 0.07 tolerated(0.15) benign(0.232) TCGA-L9-A743-01 2 80101316 80101316 G C CTNNA2 Missense_Mutation p.A234P 0.07 tolerated(0.14) benign(0.102) TCGA-L9-A743-01 2 88890359 88890359 C A EIF2AK3 Nonsense_Mutation p.G327* 0.05 TCGA-L9-A743-01 3 10370599 10370599 T A ATP2B2 Missense_Mutation p.S1211C 0.11 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-L9-A743-01 3 107097428 107097428 G A CCDC54 3'UTR 0.08 TCGA-L9-A743-01 3 193333544 193333544 G A OPA1 Missense_Mutation p.E145K 0.04 tolerated(0.26) benign(0.04) TCGA-L9-A743-01 3 49412884 49412884 C T RHOA Missense_Mutation p.E47K 0.06 deleterious(0.04) possibly_damaging(0.846) TCGA-L9-A743-01 4 109088791 109088791 C T LEF1 Missense_Mutation p.E45K 0.10 tolerated(0.08) probably_damaging(0.998) TCGA-L9-A743-01 4 120192973 120192973 G C USP53 Missense_Mutation p.R653T 0.12 deleterious(0) possibly_damaging(0.69) TCGA-L9-A743-01 4 16168344 16168344 T A TAPT1 Missense_Mutation p.K462N 0.08 tolerated(0.25) benign(0.015) TCGA-L9-A743-01 4 26483553 26483553 C T CCKAR Missense_Mutation p.A332T 0.07 tolerated(0.06) probably_damaging(0.916) TCGA-L9-A743-01 4 71522069 71522069 G T IGJ Missense_Mutation p.P153T 0.07 deleterious(0) probably_damaging(1) TCGA-L9-A743-01 4 71628271 71628271 C T RUFY3 Missense_Mutation p.L72F 0.04 deleterious(0) probably_damaging(0.999) TCGA-L9-A743-01 4 94376855 94376855 C T GRID2 Missense_Mutation p.R530C 0.09 deleterious(0) probably_damaging(1) TCGA-L9-A743-01 5 113740431 113740431 G A KCNN2 Silent p.K293K 0.06 TCGA-L9-A743-01 5 140581263 140581263 G T PCDHB11 Missense_Mutation p.R639M 0.15 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-L9-A743-01 5 140740983 140740983 G T PCDHGB2 Silent p.G427G 0.12 TCGA-L9-A743-01 5 145537134 145537134 C G LARS Missense_Mutation p.M299I 0.08 deleterious(0) benign(0.061) TCGA-L9-A743-01 5 150932881 150932881 G T FAT2 Missense_Mutation p.P1338H 0.16 possibly_damaging(0.664) TCGA-L9-A743-01 5 156899376 156899376 G T NIPAL4 Missense_Mutation p.C270F 0.15 deleterious(0.02) probably_damaging(0.992) TCGA-L9-A743-01 5 24509858 24509858 C T CDH10 Missense_Mutation p.R358H 0.08 tolerated(0.05) benign(0.009) TCGA-L9-A743-01 5 35955686 35955686 A T UGT3A1 Intron 0.22 TCGA-L9-A743-01 5 38407006 38407006 C A EGFLAM Missense_Mutation p.P302Q 0.05 tolerated_low_confidence(0.08) benign(0.011) TCGA-L9-A743-01 5 40853043 40853043 G C CARD6 Missense_Mutation p.E537Q 0.04 tolerated(0.08) benign(0.032) TCGA-L9-A743-01 5 42719376 42719376 G T GHR Missense_Mutation p.E589D 0.43 tolerated(0.15) benign(0.129) TCGA-L9-A743-01 5 75997019 75997019 G T IQGAP2 Missense_Mutation p.D1496Y 0.10 deleterious(0) probably_damaging(0.964) TCGA-L9-A743-01 5 96121518 96121518 G A ERAP1 Silent p.L639L 0.11 TCGA-L9-A743-01 6 111896976 111896976 C T TRAF3IP2 Silent p.E357E 0.21 TCGA-L9-A743-01 6 129601245 129601245 G C LAMA2 Missense_Mutation p.L830F 0.08 tolerated(0.1) benign(0.247) TCGA-L9-A743-01 6 129775406 129775406 C G LAMA2 Nonsense_Mutation p.S2227* 0.05 TCGA-L9-A743-01 6 143092271 143092271 T C HIVEP2 Missense_Mutation p.Q1202R 0.06 tolerated(0.63) benign(0.118) TCGA-L9-A743-01 6 152740748 152740748 C G SYNE1 Missense_Mutation p.E1793Q 0.05 possibly_damaging(0.448) TCGA-L9-A743-01 6 160200802 160200802 C G TCP1 Silent p.A437A 0.09 TCGA-L9-A743-01 6 161575295 161575295 G C AGPAT4 Missense_Mutation p.I132M 0.10 deleterious(0.02) probably_damaging(0.996) TCGA-L9-A743-01 6 167789469 167789469 C T TCP10 Missense_Mutation p.A225T 0.17 deleterious(0.02) benign(0.402) TCGA-L9-A743-01 6 37439674 37439674 C A CMTR1 Silent p.L538L 0.10 TCGA-L9-A743-01 6 43174142 43174142 A G CUL9 Silent p.P1702P 0.19 TCGA-L9-A743-01 6 88049943 88049943 A C SMIM8 Missense_Mutation p.D82A 0.10 deleterious(0) possibly_damaging(0.546) TCGA-L9-A743-01 6 96034799 96034799 A T MANEA Missense_Mutation p.S162C 0.15 deleterious(0) probably_damaging(0.999) TCGA-L9-A743-01 7 100681027 100681027 C A MUC17 Missense_Mutation p.S2110R 0.06 unknown(0) TCGA-L9-A743-01 7 11630159 11630159 T A THSD7A Missense_Mutation p.T461S 0.18 tolerated(0.08) benign(0.349) TCGA-L9-A743-01 7 146741135 146741135 G T CNTNAP2 Missense_Mutation p.G180V 0.18 deleterious(0) probably_damaging(0.995) TCGA-L9-A743-01 7 27135518 27135518 C G HOXA1 Missense_Mutation p.R5T 0.14 tolerated(0.09) possibly_damaging(0.52) TCGA-L9-A743-01 7 38424353 38424353 C T AMPH 3'UTR 0.14 TCGA-L9-A743-01 7 54612385 54612385 C A VSTM2A Missense_Mutation p.F50L 0.07 deleterious(0.03) possibly_damaging(0.78) TCGA-L9-A743-01 7 64004747 64004747 T A ZNF680 Missense_Mutation p.T32S 0.09 tolerated(0.14) probably_damaging(0.997) TCGA-L9-A743-01 7 95223025 95223025 C A PDK4 Missense_Mutation p.Q110H 0.05 tolerated(0.3) benign(0.002) TCGA-L9-A743-01 8 104897822 104897822 G T RIMS2 Missense_Mutation p.R332L 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L9-A743-01 8 113392612 113392612 A G CSMD3 Silent p.V2035V 0.07 TCGA-L9-A743-01 8 139164800 139164800 G T FAM135B Missense_Mutation p.P640T 0.08 tolerated(0.15) benign(0.006) TCGA-L9-A743-01 8 27634593 27634593 G A ESCO2 Silent p.A256A 0.09 TCGA-L9-A743-01 8 36642072 36642072 C G KCNU1 Missense_Mutation p.I48M 0.16 tolerated(0.1) benign(0.084) TCGA-L9-A743-01 8 77766229 77766229 C A ZFHX4 Missense_Mutation p.Q2358K 0.16 probably_damaging(0.91) TCGA-L9-A743-01 8 86044011 86044011 A G LRRCC1 Missense_Mutation p.R595G 0.08 deleterious(0) possibly_damaging(0.616) TCGA-L9-A743-01 8 87541247 87541247 T A CPNE3 Missense_Mutation p.F69L 0.14 deleterious(0) possibly_damaging(0.868) TCGA-L9-A743-01 9 124522422 124522422 G T DAB2IP Missense_Mutation p.G264C 0.14 deleterious(0) probably_damaging(1) TCGA-L9-A743-01 9 127715207 127715207 T C SCAI Missense_Mutation p.Y590C 0.11 tolerated(0.15) benign(0.029) TCGA-L9-A743-01 9 32633849 32633849 G C TAF1L Missense_Mutation p.Q577E 0.06 tolerated(0.15) benign(0.208) TCGA-L9-A743-01 X 101098158 101098158 G T NXF5 5'UTR 0.12 TCGA-L9-A743-01 X 111025368 111025368 T C TRPC5 Splice_Site p.X633_splice 0.16 TCGA-L9-A743-01 X 111195530 111195530 A G TRPC5 Missense_Mutation p.V40A 0.18 tolerated(0.19) probably_damaging(0.999) TCGA-L9-A743-01 X 117815131 117815131 G C DOCK11 Missense_Mutation p.E1928Q 0.10 deleterious(0) possibly_damaging(0.85) TCGA-L9-A743-01 X 128724363 128724363 T C OCRL 3'UTR 0.19 TCGA-L9-A743-01 X 12906561 12906561 C A TLR7 Silent p.L978L 0.10 TCGA-L9-A743-01 X 140995964 140995964 T C MAGEC1 Missense_Mutation p.V925A 0.09 tolerated(1) unknown(0) TCGA-L9-A743-01 X 153588251 153588251 A C FLNA Silent p.T1276T 0.19 TCGA-L9-A743-01 X 30237166 30237166 T A MAGEB2 Missense_Mutation p.S157T 0.17 tolerated(0.09) benign(0.291) TCGA-L9-A743-01 X 34648488 34648488 G A TMEM47 Missense_Mutation p.S163L 0.09 tolerated(0.17) probably_damaging(0.988) TCGA-L9-A743-01 X 92927556 92927556 C A NAP1L3 Nonsense_Mutation p.E250* 0.09 TCGA-L9-A7SV-01 10 100904082 100904082 C A HPSE2 Nonsense_Mutation p.E175* 0.58 TCGA-L9-A7SV-01 10 101595953 101595953 C T ABCC2 Missense_Mutation p.R1174C 0.24 deleterious(0) probably_damaging(0.997) TCGA-L9-A7SV-01 10 101835759 101835759 C A CPN1 Missense_Mutation p.R110M 0.37 deleterious(0) benign(0.404) TCGA-L9-A7SV-01 10 103799806 103799806 C A C10orf76 Missense_Mutation p.K22N 0.38 deleterious(0) probably_damaging(0.992) TCGA-L9-A7SV-01 10 106130692 106130692 G T CCDC147 Missense_Mutation p.G324W 0.33 deleterious(0.01) possibly_damaging(0.775) TCGA-L9-A7SV-01 10 106207516 106207516 G T CCDC147 Missense_Mutation p.A773S 0.40 deleterious(0.01) possibly_damaging(0.69) TCGA-L9-A7SV-01 10 106976744 106976744 T A SORCS3 Silent p.A866A 0.33 TCGA-L9-A7SV-01 10 108337047 108337047 G T SORCS1 Intron 0.20 TCGA-L9-A7SV-01 10 108412222 108412222 C A SORCS1 Missense_Mutation p.R798L 0.69 deleterious(0.01) possibly_damaging(0.597) TCGA-L9-A7SV-01 10 11207591 11207591 G T CELF2 Missense_Mutation p.V73F 0.52 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 10 112838847 112838847 G T ADRA2A Missense_Mutation p.G365W 0.44 deleterious(0.02) possibly_damaging(0.521) TCGA-L9-A7SV-01 10 117154183 117154183 G T ATRNL1 Missense_Mutation p.G1064C 0.12 deleterious(0) probably_damaging(0.959) TCGA-L9-A7SV-01 10 118386413 118386413 G T PNLIPRP2 Silent p.V123V 0.25 TCGA-L9-A7SV-01 10 118386414 118386414 G T PNLIPRP2 Missense_Mutation p.D124Y 0.25 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 10 120353576 120353576 G T PRLHR 3'UTR 0.41 TCGA-L9-A7SV-01 10 120789940 120789940 C G NANOS1 Silent p.P209P 0.25 TCGA-L9-A7SV-01 10 124189152 124189152 G T PLEKHA1 Missense_Mutation p.G305C 0.30 tolerated(0.36) benign(0) TCGA-L9-A7SV-01 10 124345872 124345872 A T DMBT1 Missense_Mutation p.S586C 0.29 tolerated(0.18) unknown(0) TCGA-L9-A7SV-01 10 124608844 124608844 C A FAM24B Silent p.L68L 0.21 TCGA-L9-A7SV-01 10 125639816 125639816 C T CPXM2 Missense_Mutation p.S105N 0.34 tolerated_low_confidence(0.31) benign(0) TCGA-L9-A7SV-01 10 127686049 127686049 G C FANK1 Missense_Mutation p.K178N 0.19 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 10 128147629 128147629 G T C10orf90 Missense_Mutation p.T626K 0.20 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 10 128192583 128192583 C T C10orf90 Missense_Mutation p.A396T 0.10 tolerated(0.67) benign(0.035) TCGA-L9-A7SV-01 10 13234568 13234568 G C MCM10 Missense_Mutation p.R583P 0.19 deleterious(0.01) probably_damaging(0.979) TCGA-L9-A7SV-01 10 134014346 134014346 C A DPYSL4 Missense_Mutation p.S323R 0.31 tolerated(0.37) possibly_damaging(0.794) TCGA-L9-A7SV-01 10 134941918 134941918 G T GPR123 Missense_Mutation p.G196C 0.33 tolerated(0.33) benign(0.009) TCGA-L9-A7SV-01 10 134942976 134942976 C A GPR123 Missense_Mutation p.N548K 0.17 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 10 135195132 135195132 G T PAOX Silent p.P279P 0.20 TCGA-L9-A7SV-01 10 13538799 13538799 T A BEND7 Nonsense_Mutation p.K128* 0.47 TCGA-L9-A7SV-01 10 17126298 17126298 T A CUBN Missense_Mutation p.Q758L 0.42 tolerated(0.09) possibly_damaging(0.507) TCGA-L9-A7SV-01 10 17362958 17362958 C T ST8SIA6 Missense_Mutation p.M372I 0.15 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 10 17641328 17641328 C A PTPLA Missense_Mutation p.S189I 0.25 deleterious(0.01) possibly_damaging(0.683) TCGA-L9-A7SV-01 10 18122771 18122771 C G MRC1 Missense_Mutation p.H261D 0.42 deleterious(0) probably_damaging(0.93) TCGA-L9-A7SV-01 10 18242189 18242189 G T SLC39A12 5'UTR 0.18 TCGA-L9-A7SV-01 10 18242295 18242295 A C SLC39A12 Silent p.S30S 0.24 TCGA-L9-A7SV-01 10 18250568 18250568 G T SLC39A12 Missense_Mutation p.R107I 0.41 tolerated(0.11) benign(0.163) TCGA-L9-A7SV-01 10 18787355 18787355 G T CACNB2 Silent p.V135V 0.49 TCGA-L9-A7SV-01 10 22048429 22048429 C A DNAJC1 Silent p.A422A 0.57 TCGA-L9-A7SV-01 10 22607067 22607067 G A COMMD3 Silent p.E95E 0.11 TCGA-L9-A7SV-01 10 23482654 23482654 C A PTF1A Missense_Mutation p.P269H 0.17 deleterious(0) unknown(0) TCGA-L9-A7SV-01 10 24834066 24834066 G C KIAA1217 Intron 0.42 TCGA-L9-A7SV-01 10 26414395 26414395 A G MYO3A Missense_Mutation p.R658G 0.50 deleterious(0) possibly_damaging(0.587) TCGA-L9-A7SV-01 10 26414417 26414417 C T MYO3A Missense_Mutation p.P665L 0.18 deleterious(0.01) benign(0.16) TCGA-L9-A7SV-01 10 27448599 27448599 G T MASTL Missense_Mutation p.G126C 0.24 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 10 27702359 27702359 A T PTCHD3 Missense_Mutation p.V274E 0.42 tolerated(0.32) benign(0.018) TCGA-L9-A7SV-01 10 27702586 27702586 G A PTCHD3 Silent p.S198S 0.37 TCGA-L9-A7SV-01 10 28225747 28225747 G A ARMC4 Silent p.A720A 0.21 TCGA-L9-A7SV-01 10 28233217 28233217 G T ARMC4 Silent p.I559I 0.25 TCGA-L9-A7SV-01 10 30318389 30318389 G A KIAA1462 Missense_Mutation p.R230C 0.40 deleterious(0) probably_damaging(0.931) TCGA-L9-A7SV-01 10 32304518 32304518 C A KIF5B Missense_Mutation p.G944V 0.48 deleterious(0.03) benign(0.086) TCGA-L9-A7SV-01 10 43127869 43127869 C A ZNF33B Missense_Mutation p.G10W 0.13 deleterious(0) possibly_damaging(0.695) TCGA-L9-A7SV-01 10 43701402 43701402 C A RASGEF1A Nonsense_Mutation p.E55* 0.24 TCGA-L9-A7SV-01 10 43870975 43870975 G T FXYD4 Silent p.L42L 0.11 TCGA-L9-A7SV-01 10 45430367 45430367 C A TMEM72 Missense_Mutation p.L205M 0.12 tolerated(0.3) benign(0.046) TCGA-L9-A7SV-01 10 45495807 45495807 G T C10orf25 3'UTR 0.11 TCGA-L9-A7SV-01 10 45644234 45644234 C A RP11-445N18.7 RNA 0.18 TCGA-L9-A7SV-01 10 45941109 45941109 C T ALOX5 Missense_Mutation p.R667W 0.11 deleterious(0.01) possibly_damaging(0.777) TCGA-L9-A7SV-01 10 46967570 46967570 G C SYT15 Missense_Mutation p.I169M 0.08 tolerated(0.11) possibly_damaging(0.612) TCGA-L9-A7SV-01 10 46999734 46999734 G T GPRIN2 Missense_Mutation p.G285V 0.09 tolerated(0.22) benign(0.054) TCGA-L9-A7SV-01 10 48371237 48371237 T A ZNF488 Silent p.G235G 0.13 TCGA-L9-A7SV-01 10 48389509 48389509 C A RBP3 Missense_Mutation p.A457S 0.11 tolerated(0.09) probably_damaging(0.919) TCGA-L9-A7SV-01 10 48426469 48426469 A C GDF10 3'UTR 0.19 TCGA-L9-A7SV-01 10 5037949 5037949 A G AKR1C2 Missense_Mutation p.W227R 0.15 deleterious(0.02) benign(0.384) TCGA-L9-A7SV-01 10 50666903 50666903 A G ERCC6 Silent p.S1480S 0.13 TCGA-L9-A7SV-01 10 50723379 50723379 C A ERCC6-PGBD3 Nonstop_Mutation p.*1062Yext*? 0.37 TCGA-L9-A7SV-01 10 50819213 50819213 G T SLC18A3 Missense_Mutation p.G143W 0.16 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 10 50819832 50819832 C A SLC18A3 Missense_Mutation p.A349E 0.14 deleterious(0.01) probably_damaging(0.989) TCGA-L9-A7SV-01 10 51580611 51580611 G T NCOA4 Missense_Mutation p.R82L 0.58 deleterious(0) probably_damaging(0.914) TCGA-L9-A7SV-01 10 51853055 51853055 C T FAM21A Missense_Mutation p.P344L 0.27 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 10 5203731 5203731 C A AKR1CL1 Intron 0.39 TCGA-L9-A7SV-01 10 52610472 52610472 C A A1CF Nonsense_Mutation p.G26* 0.12 TCGA-L9-A7SV-01 10 54040670 54040670 C A PRKG1 Missense_Mutation p.H509N 0.20 tolerated(0.69) benign(0.002) TCGA-L9-A7SV-01 10 54042066 54042066 C A PRKG1 Missense_Mutation p.L567M 0.22 tolerated(0.12) possibly_damaging(0.84) TCGA-L9-A7SV-01 10 54074385 54074385 C A DKK1 Missense_Mutation p.P64Q 0.24 deleterious(0) possibly_damaging(0.904) TCGA-L9-A7SV-01 10 54530474 54530474 G T MBL2 Nonsense_Mutation p.S87* 0.17 TCGA-L9-A7SV-01 10 5498959 5498959 G T NET1 3'UTR 0.48 TCGA-L9-A7SV-01 10 55568576 55568576 C G PCDH15 Missense_Mutation p.S679T 0.11 deleterious_low_confidence(0) unknown(0) TCGA-L9-A7SV-01 10 5567432 5567432 C A CALML3 Silent p.A128A 0.45 TCGA-L9-A7SV-01 10 55700691 55700691 C A PCDH15 Missense_Mutation p.G1056V 0.14 deleterious(0.05) benign(0.247) TCGA-L9-A7SV-01 10 61011384 61011384 G T FAM13C Silent p.R529R 0.20 TCGA-L9-A7SV-01 10 61830817 61830817 G A ANK3 Silent p.L3274L 0.51 TCGA-L9-A7SV-01 10 61832577 61832577 T C ANK3 Missense_Mutation p.T2688A 0.12 benign(0) TCGA-L9-A7SV-01 10 61834117 61834117 C A ANK3 Missense_Mutation p.R2174S 0.16 probably_damaging(0.95) TCGA-L9-A7SV-01 10 63212808 63212808 G T TMEM26 Missense_Mutation p.A11D 0.37 deleterious(0) possibly_damaging(0.588) TCGA-L9-A7SV-01 10 63212900 63212900 G T TMEM26 5'UTR 0.49 TCGA-L9-A7SV-01 10 64136571 64136571 A G ZNF365 Missense_Mutation p.K207E 0.14 tolerated(0.93) possibly_damaging(0.877) TCGA-L9-A7SV-01 10 64913387 64913387 C G NRBF2 Missense_Mutation p.D91E 0.09 tolerated(0.27) benign(0.031) TCGA-L9-A7SV-01 10 68526156 68526156 C T CTNNA3 Missense_Mutation p.D383N 0.23 deleterious(0) possibly_damaging(0.543) TCGA-L9-A7SV-01 10 68686344 68686344 G T LRRTM3 Translation_Start_Site p.M1? 0.08 deleterious(0.04) benign(0.002) TCGA-L9-A7SV-01 10 69565387 69565387 G T DNAJC12 Silent p.P152P 0.33 TCGA-L9-A7SV-01 10 70202736 70202736 C A DNA2 Missense_Mutation p.E537D 0.48 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 10 70231739 70231739 C A DNA2 Silent p.R47R 0.13 TCGA-L9-A7SV-01 10 70644733 70644733 G T STOX1 Missense_Mutation p.G394V 0.22 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 10 72326434 72326434 G T PALD1 Missense_Mutation p.R839L 0.67 deleterious(0) possibly_damaging(0.643) TCGA-L9-A7SV-01 10 73376973 73376973 G T CDH23 Silent p.L319L 0.11 TCGA-L9-A7SV-01 10 73472321 73472321 A T C10orf105 3'UTR 0.19 TCGA-L9-A7SV-01 10 73492048 73492048 C A CDH23 Silent p.I1345I 0.12 TCGA-L9-A7SV-01 10 75519503 75519503 G T SEC24C Missense_Mutation p.Q144H 0.14 tolerated(0.1) benign(0.004) TCGA-L9-A7SV-01 10 75608782 75608782 T A CAMK2G Missense_Mutation p.Q169L 0.14 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-L9-A7SV-01 10 78647175 78647175 G T KCNMA1 Missense_Mutation p.A1170D 0.48 tolerated(0.07) possibly_damaging(0.624) TCGA-L9-A7SV-01 10 78844458 78844458 C G KCNMA1 Missense_Mutation p.C487S 0.44 deleterious(0.01) probably_damaging(0.994) TCGA-L9-A7SV-01 10 81053505 81053505 G T ZMIZ1 Intron 0.42 TCGA-L9-A7SV-01 10 82040018 82040018 T C MAT1A Missense_Mutation p.I154V 0.54 tolerated(0.57) benign(0.005) TCGA-L9-A7SV-01 10 82112220 82112220 C A DYDC1 Missense_Mutation p.M46I 0.34 tolerated(0.49) benign(0.004) TCGA-L9-A7SV-01 10 85933640 85933640 T A C10orf99 Nonsense_Mutation p.C11* 0.12 TCGA-L9-A7SV-01 10 85971946 85971946 A T CDHR1 Missense_Mutation p.H522L 0.39 deleterious(0.02) benign(0.315) TCGA-L9-A7SV-01 10 882423 882423 C A LARP4B Nonsense_Mutation p.E224* 0.19 TCGA-L9-A7SV-01 10 93463 93463 G T TUBB8 Missense_Mutation p.T290N 0.38 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-L9-A7SV-01 10 94669368 94669368 G T EXOC6 Missense_Mutation p.G215C 0.53 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 10 94818076 94818076 G A EXOC6 Silent p.L793L 0.22 TCGA-L9-A7SV-01 10 95129402 95129402 C A MYOF Missense_Mutation p.M863I 0.18 tolerated(0.06) benign(0.206) TCGA-L9-A7SV-01 10 95848995 95848995 G T PLCE1 Intron 0.28 TCGA-L9-A7SV-01 10 95892012 95892012 G T PLCE1 Nonsense_Mutation p.E430* 0.28 TCGA-L9-A7SV-01 10 96005876 96005876 C G PLCE1 Missense_Mutation p.A865G 0.11 deleterious(0.01) possibly_damaging(0.507) TCGA-L9-A7SV-01 10 98741280 98741280 G T C10orf12 Missense_Mutation p.G45W 0.21 deleterious(0) probably_damaging(0.995) TCGA-L9-A7SV-01 10 99349613 99349613 G T C10orf62 5'UTR 0.54 TCGA-L9-A7SV-01 11 102650370 102650370 C A MMP10 Missense_Mutation p.G71V 0.90 deleterious(0) probably_damaging(0.997) TCGA-L9-A7SV-01 11 102825297 102825297 A T MMP13 Missense_Mutation p.V134D 0.88 deleterious(0) probably_damaging(0.989) TCGA-L9-A7SV-01 11 102991423 102991423 G C DYNC2H1 Missense_Mutation p.L380F 0.77 possibly_damaging(0.865) TCGA-L9-A7SV-01 11 105732785 105732785 G C GRIA4 Missense_Mutation p.G175R 0.92 tolerated(0.12) possibly_damaging(0.654) TCGA-L9-A7SV-01 11 105924825 105924825 T A KBTBD3 Silent p.V197V 0.77 TCGA-L9-A7SV-01 11 10800224 10800224 A T CTR9 Splice_Site p.X1032_splice 0.60 TCGA-L9-A7SV-01 11 114401388 114401388 C A NXPE1 5'UTR 0.64 TCGA-L9-A7SV-01 11 117870085 117870085 C T IL10RA Missense_Mutation p.P489L 0.88 tolerated(0.36) benign(0.012) TCGA-L9-A7SV-01 11 118770632 118770632 C T BCL9L Missense_Mutation p.G1134R 0.80 benign(0.148) TCGA-L9-A7SV-01 11 119243865 119243865 C A USP2 Missense_Mutation p.G109V 0.87 deleterious_low_confidence(0) possibly_damaging(0.904) TCGA-L9-A7SV-01 11 120776146 120776146 G C GRIK4 Missense_Mutation p.G474R 0.82 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 11 123676586 123676586 T C OR6M1 Missense_Mutation p.T158A 0.18 tolerated(0.16) benign(0.073) TCGA-L9-A7SV-01 11 123908923 123908923 G T OR10G7 Silent p.G262G 0.85 TCGA-L9-A7SV-01 11 124180137 124180137 G C OR8D1 Missense_Mutation p.H176D 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-L9-A7SV-01 11 124413437 124413437 C A OR8B12 Silent p.V38V 0.45 TCGA-L9-A7SV-01 11 124805877 124805877 G T HEPACAM Missense_Mutation p.S9Y 0.38 deleterious(0.04) benign(0.049) TCGA-L9-A7SV-01 11 128638127 128638127 C A FLI1 Silent p.P115P 0.46 TCGA-L9-A7SV-01 11 128710154 128710154 C T KCNJ1 Silent p.R14R 0.44 TCGA-L9-A7SV-01 11 133816102 133816102 T A IGSF9B Missense_Mutation p.E39V 0.33 deleterious(0) probably_damaging(0.926) TCGA-L9-A7SV-01 11 14991589 14991589 G A CALCA Missense_Mutation p.A40V 0.83 tolerated(0.4) benign(0.005) TCGA-L9-A7SV-01 11 18054828 18054828 T A TPH1 Missense_Mutation p.D132V 0.33 deleterious(0) possibly_damaging(0.8) TCGA-L9-A7SV-01 11 1955013 1955013 C A TNNT3 Missense_Mutation p.H78Q 0.42 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 11 27528293 27528293 C A LIN7C Missense_Mutation p.A3S 0.22 tolerated_low_confidence(0.32) benign(0.002) TCGA-L9-A7SV-01 11 28311857 28311857 G T METTL15 Missense_Mutation p.G171V 0.81 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 11 3141724 3141724 T A OSBPL5 Missense_Mutation p.E178V 0.83 deleterious(0) possibly_damaging(0.769) TCGA-L9-A7SV-01 11 33121206 33121206 T C CSTF3 Missense_Mutation p.Y295C 0.38 tolerated(0.13) benign(0.259) TCGA-L9-A7SV-01 11 33667339 33667339 C A KIAA1549L Missense_Mutation p.S1542R 0.81 deleterious(0.01) probably_damaging(0.989) TCGA-L9-A7SV-01 11 35211485 35211485 C A CD44 Missense_Mutation p.S180R 0.84 deleterious(0) probably_damaging(0.966) TCGA-L9-A7SV-01 11 45245849 45245849 T G PRDM11 Missense_Mutation p.V275G 0.43 deleterious(0) benign(0.253) TCGA-L9-A7SV-01 11 45245850 45245850 G A PRDM11 Silent p.V275V 0.43 TCGA-L9-A7SV-01 11 47861651 47861651 T C NUP160 Intron 0.48 TCGA-L9-A7SV-01 11 48185160 48185160 G T PTPRJ Missense_Mutation p.V1237L 0.38 deleterious(0) probably_damaging(0.997) TCGA-L9-A7SV-01 11 4824708 4824708 C G OR52R1 Missense_Mutation p.Q301H 0.73 deleterious(0.01) possibly_damaging(0.853) TCGA-L9-A7SV-01 11 48266915 48266915 G A OR4X2 Nonsense_Mutation p.W87* 0.75 TCGA-L9-A7SV-01 11 4928924 4928924 G C OR51A7 Missense_Mutation p.V109L 0.34 tolerated(0.72) benign(0.013) TCGA-L9-A7SV-01 11 5020965 5020965 T A OR51L1 Silent p.L251L 0.44 TCGA-L9-A7SV-01 11 51412176 51412176 T A OR4A5 Missense_Mutation p.T74S 0.25 tolerated_low_confidence(0.44) benign(0.006) TCGA-L9-A7SV-01 11 51515788 51515788 T A OR4C46 Silent p.P169P 0.38 TCGA-L9-A7SV-01 11 5221658 5221658 C T OR51V1 Silent p.L91L 0.42 TCGA-L9-A7SV-01 11 5410654 5410654 C T OR51M1 Missense_Mutation p.P9L 0.37 deleterious(0.03) benign(0.002) TCGA-L9-A7SV-01 11 55110973 55110973 C A OR4A16 Silent p.L99L 0.60 TCGA-L9-A7SV-01 11 55339642 55339642 T A OR4C16 Silent p.L13L 0.52 TCGA-L9-A7SV-01 11 55418434 55418434 C A OR4S2 Missense_Mutation p.P19T 0.28 tolerated(0.06) benign(0.075) TCGA-L9-A7SV-01 11 55579073 55579073 G T OR5L1 Missense_Mutation p.G44V 0.21 deleterious(0) probably_damaging(0.967) TCGA-L9-A7SV-01 11 55579290 55579290 C A OR5L1 Silent p.A116A 0.22 TCGA-L9-A7SV-01 11 55595169 55595169 C A OR5L2 Missense_Mutation p.H159N 0.62 deleterious(0.04) probably_damaging(0.999) TCGA-L9-A7SV-01 11 55606681 55606681 G T OR5D16 Missense_Mutation p.A152S 0.24 tolerated(0.8) benign(0.052) TCGA-L9-A7SV-01 11 55657434 55657434 C A TRIM51 Missense_Mutation p.L260M 0.49 deleterious(0.01) possibly_damaging(0.863) TCGA-L9-A7SV-01 11 55761285 55761285 C A OR5F1 Missense_Mutation p.V273L 0.33 deleterious(0.03) possibly_damaging(0.824) TCGA-L9-A7SV-01 11 55873142 55873142 G T OR8H2 Missense_Mutation p.M208I 0.28 tolerated(0.34) benign(0.02) TCGA-L9-A7SV-01 11 55890405 55890405 C T OR8H3 Missense_Mutation p.A186V 0.46 tolerated(0.11) benign(0.098) TCGA-L9-A7SV-01 11 55999735 55999735 A T OR5T2 Missense_Mutation p.H309Q 0.25 tolerated(0.67) benign(0.175) TCGA-L9-A7SV-01 11 56019989 56019989 C G OR5T3 Missense_Mutation p.T105R 0.27 deleterious(0) possibly_damaging(0.638) TCGA-L9-A7SV-01 11 56043280 56043280 G T OR5T1 Missense_Mutation p.G56W 0.45 deleterious(0) probably_damaging(0.998) TCGA-L9-A7SV-01 11 56043281 56043281 G T OR5T1 Missense_Mutation p.G56V 0.44 deleterious(0.01) possibly_damaging(0.623) TCGA-L9-A7SV-01 11 56057816 56057816 G A OR8H1 Silent p.A241A 0.57 TCGA-L9-A7SV-01 11 56114333 56114333 T C OR8K1 Silent p.T273T 0.28 TCGA-L9-A7SV-01 11 56184820 56184820 C A OR5R1 Missense_Mutation p.V297L 0.56 deleterious(0) benign(0.401) TCGA-L9-A7SV-01 11 56230590 56230590 C A OR5M9 Missense_Mutation p.L96F 0.60 tolerated(0.64) benign(0.027) TCGA-L9-A7SV-01 11 56258287 56258287 G A OR5M8 Missense_Mutation p.A187V 0.23 deleterious(0.01) possibly_damaging(0.904) TCGA-L9-A7SV-01 11 56258307 56258307 G T OR5M8 Missense_Mutation p.D180E 0.28 deleterious(0.02) probably_damaging(0.983) TCGA-L9-A7SV-01 11 56344466 56344466 G T OR5M10 Missense_Mutation p.H244Q 0.41 deleterious(0.01) probably_damaging(0.962) TCGA-L9-A7SV-01 11 56409322 56409322 G T OR5AP2 Silent p.T198T 0.55 TCGA-L9-A7SV-01 11 57982282 57982282 C G OR1S1 Missense_Mutation p.I22M 0.30 deleterious(0.03) possibly_damaging(0.548) TCGA-L9-A7SV-01 11 58491959 58491959 G A GLYAT Missense_Mutation p.P4L 0.44 tolerated(0.65) benign(0.012) TCGA-L9-A7SV-01 11 58920916 58920916 G T FAM111A Missense_Mutation p.W592L 0.24 deleterious(0) possibly_damaging(0.685) TCGA-L9-A7SV-01 11 59189994 59189994 T A OR5A2 Missense_Mutation p.M145L 0.21 tolerated(0.6) benign(0.03) TCGA-L9-A7SV-01 11 5968761 5968761 C A OR56A3 Missense_Mutation p.P62H 0.78 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 11 60064764 60064764 T - MS4A4A Frame_Shift_Del p.V99Gfs*11 0.19 TCGA-L9-A7SV-01 11 60165411 60165411 C A MS4A14 Silent p.P75P 0.20 TCGA-L9-A7SV-01 11 60285675 60285675 G T MS4A13 Missense_Mutation p.W40L 0.22 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 11 607164 607164 G T PHRF1 Missense_Mutation p.A569S 0.44 tolerated(0.58) benign(0.108) TCGA-L9-A7SV-01 11 60777206 60777206 C A CD6 Missense_Mutation p.P315H 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-L9-A7SV-01 11 6129380 6129380 G - OR56B4 Frame_Shift_Del p.A125Qfs*2 0.47 TCGA-L9-A7SV-01 11 61404802 61404802 G T RPLP0P2 RNA 0.15 TCGA-L9-A7SV-01 11 61570287 61570287 G A FADS1 Silent p.F480F 0.20 TCGA-L9-A7SV-01 11 61729902 61729902 C - BEST1 Frame_Shift_Del p.N368Tfs*54 0.32 TCGA-L9-A7SV-01 11 61897384 61897384 G T INCENP Missense_Mutation p.A129S 0.31 deleterious(0.04) unknown(0) TCGA-L9-A7SV-01 11 62571284 62571284 C G NXF1 Missense_Mutation p.Q65H 0.25 tolerated(1) benign(0.001) TCGA-L9-A7SV-01 11 63065180 63065180 G T SLC22A10 Missense_Mutation p.V271F 0.58 tolerated(0.21) benign(0.072) TCGA-L9-A7SV-01 11 63918710 63918710 C A MACROD1 Splice_Site p.X173_splice 0.24 TCGA-L9-A7SV-01 11 63918711 63918711 C A MACROD1 Missense_Mutation p.A173S 0.24 deleterious(0) possibly_damaging(0.874) TCGA-L9-A7SV-01 11 64361204 64361204 C A SLC22A12 Nonsense_Mutation p.Y253* 0.22 TCGA-L9-A7SV-01 11 64367915 64367915 C A SLC22A12 Silent p.I454I 0.36 TCGA-L9-A7SV-01 11 64397918 64397918 G T NRXN2 Missense_Mutation p.T1238N 0.11 deleterious(0) probably_damaging(0.968) TCGA-L9-A7SV-01 11 64678583 64678583 C A ATG2A Missense_Mutation p.G465W 0.54 deleterious(0) probably_damaging(0.924) TCGA-L9-A7SV-01 11 65124535 65124535 G A TIGD3 Missense_Mutation p.G419E 0.46 tolerated(0.26) benign(0.022) TCGA-L9-A7SV-01 11 65267708 65267708 G C MALAT1 RNA 0.21 TCGA-L9-A7SV-01 11 66189683 66189683 G T NPAS4 Missense_Mutation p.A90S 0.19 tolerated(0.96) benign(0.085) TCGA-L9-A7SV-01 11 66191767 66191767 A T NPAS4 Missense_Mutation p.Q469L 0.41 tolerated_low_confidence(0.34) possibly_damaging(0.838) TCGA-L9-A7SV-01 11 66359590 66359590 G - CCDC87 Frame_Shift_Del p.S300Rfs*36 0.26 TCGA-L9-A7SV-01 11 66637856 66637856 C A PC Missense_Mutation p.V274L 0.17 deleterious(0.04) benign(0.433) TCGA-L9-A7SV-01 11 67218881 67218881 G T GPR152 Missense_Mutation p.P439T 0.33 deleterious_low_confidence(0.02) benign(0.058) TCGA-L9-A7SV-01 11 6789946 6789946 G T OR2AG2 Silent p.A81A 0.49 TCGA-L9-A7SV-01 11 6816598 6816598 G T OR6A2 Nonsense_Mutation p.C114* 0.79 TCGA-L9-A7SV-01 11 68777428 68777428 G - MRGPRF Intron 0.33 TCGA-L9-A7SV-01 11 69062907 69062907 C T MYEOV Missense_Mutation p.P29L 0.64 deleterious_low_confidence(0.02) benign(0.038) TCGA-L9-A7SV-01 11 69933921 69933921 G T ANO1 Missense_Mutation p.G58C 0.66 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 11 71939252 71939252 C A INPPL1 Missense_Mutation p.H67Q 0.22 deleterious(0) probably_damaging(0.993) TCGA-L9-A7SV-01 11 7324536 7324536 C A SYT9 Missense_Mutation p.L138I 0.75 tolerated(0.33) benign(0.248) TCGA-L9-A7SV-01 11 74000173 74000173 T A P4HA3 Silent p.A240A 0.18 TCGA-L9-A7SV-01 11 75599948 75599948 G T UVRAG Splice_Site p.X169_splice 0.51 TCGA-L9-A7SV-01 11 76370889 76370889 G C LRRC32 Missense_Mutation p.A583G 0.59 tolerated(0.26) benign(0.009) TCGA-L9-A7SV-01 11 76372190 76372190 G T LRRC32 Silent p.P149P 0.23 TCGA-L9-A7SV-01 11 76376963 76376963 C A LRRC32 Silent p.L12L 0.33 TCGA-L9-A7SV-01 11 76751322 76751322 C A B3GNT6 Missense_Mutation p.R243S 0.60 deleterious(0.04) benign(0.033) TCGA-L9-A7SV-01 11 77775285 77775285 C A THRSP Missense_Mutation p.L120I 0.14 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 11 7982196 7982196 C A NLRP10 Silent p.A321A 0.77 TCGA-L9-A7SV-01 11 804132 804132 G A PIDD Missense_Mutation p.P86L 0.57 deleterious(0.04) probably_damaging(0.981) TCGA-L9-A7SV-01 11 82564309 82564309 C A PRCP Missense_Mutation p.W128C 0.10 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 11 86518688 86518688 G - PRSS23 Frame_Shift_Del p.A2Qfs*20 0.43 TCGA-L9-A7SV-01 11 89537250 89537250 C A TRIM49 Nonsense_Mutation p.E130* 0.31 TCGA-L9-A7SV-01 11 89935523 89935523 C T CHORDC1 3'UTR 0.33 TCGA-L9-A7SV-01 11 92714881 92714881 C T MTNR1B Silent p.I164I 0.20 TCGA-L9-A7SV-01 11 99715642 99715642 T A CNTN5 Silent p.T112T 0.23 TCGA-L9-A7SV-01 12 100887138 100887138 T A NR1H4 Missense_Mutation p.L13I 0.28 tolerated(0.3) benign(0.002) TCGA-L9-A7SV-01 12 101581234 101581234 C A SLC5A8 Missense_Mutation p.G298V 0.73 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 12 103234266 103234266 G T PAH Silent p.P409P 0.30 TCGA-L9-A7SV-01 12 104054152 104054152 C A STAB2 Missense_Mutation p.P593Q 0.18 deleterious(0.04) possibly_damaging(0.766) TCGA-L9-A7SV-01 12 104056714 104056714 C A STAB2 Missense_Mutation p.P654T 0.21 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 12 104084226 104084226 C A STAB2 Nonsense_Mutation p.Y1069* 0.17 TCGA-L9-A7SV-01 12 104390519 104390519 T A GLT8D2 Silent p.G198G 0.21 TCGA-L9-A7SV-01 12 107090072 107090072 C A RFX4 Missense_Mutation p.F236L 0.27 tolerated(0.44) possibly_damaging(0.791) TCGA-L9-A7SV-01 12 108985487 108985487 G T TMEM119 Missense_Mutation p.P225T 0.24 tolerated(0.13) benign(0.022) TCGA-L9-A7SV-01 12 108986011 108986011 G T TMEM119 Missense_Mutation p.S50Y 0.41 tolerated(0.16) probably_damaging(0.939) TCGA-L9-A7SV-01 12 111785978 111785978 C A CUX2 Missense_Mutation p.P1437H 0.56 tolerated_low_confidence(0.08) probably_damaging(0.931) TCGA-L9-A7SV-01 12 112892387 112892387 G A PTPN11 Missense_Mutation p.G182D 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-L9-A7SV-01 12 112924408 112924408 G T PTPN11 Missense_Mutation p.A452S 0.28 tolerated(0.29) probably_damaging(0.975) TCGA-L9-A7SV-01 12 113334574 113334574 T A RPH3A Missense_Mutation p.S692T 0.33 tolerated_low_confidence(0.07) benign(0.011) TCGA-L9-A7SV-01 12 11421062 11421062 G T PRB3 Missense_Mutation p.P41T 0.76 deleterious(0.01) unknown(0) TCGA-L9-A7SV-01 12 117705888 117705888 G C NOS1 Missense_Mutation p.A634G 0.35 deleterious(0.01) possibly_damaging(0.659) TCGA-L9-A7SV-01 12 118298188 118298188 C T KSR2 Missense_Mutation p.V77I 0.50 deleterious(0.05) possibly_damaging(0.89) TCGA-L9-A7SV-01 12 118533537 118533537 C A VSIG10 Silent p.V54V 0.22 TCGA-L9-A7SV-01 12 118827731 118827731 G T SUDS3 Splice_Site p.X114_splice 0.21 TCGA-L9-A7SV-01 12 120594409 120594409 C A GCN1L1 Splice_Site p.X1057_splice 0.48 TCGA-L9-A7SV-01 12 120597821 120597821 C A GCN1L1 Missense_Mutation p.G853W 0.27 benign(0.205) TCGA-L9-A7SV-01 12 121125323 121125323 G T MLEC Missense_Mutation p.R75L 0.30 deleterious(0.01) benign(0.139) TCGA-L9-A7SV-01 12 122716678 122716678 C A VPS33A 3'UTR 0.50 TCGA-L9-A7SV-01 12 123187579 123187579 C T HCAR2 Missense_Mutation p.M84I 0.25 tolerated(0.07) benign(0.003) TCGA-L9-A7SV-01 12 123646734 123646734 C A MPHOSPH9 Missense_Mutation p.V869F 0.15 tolerated(0.61) probably_damaging(0.977) TCGA-L9-A7SV-01 12 128899758 128899758 G A TMEM132C Silent p.G189G 0.29 TCGA-L9-A7SV-01 12 130648101 130648101 C G FZD10 Missense_Mutation p.A205G 0.60 tolerated(0.41) benign(0.001) TCGA-L9-A7SV-01 12 33031865 33031865 C A PKP2 Missense_Mutation p.D109Y 0.60 deleterious(0.01) probably_damaging(0.927) TCGA-L9-A7SV-01 12 41419022 41419022 C A CNTN1 Nonsense_Mutation p.S865* 0.31 TCGA-L9-A7SV-01 12 41422964 41422964 G T CNTN1 Nonsense_Mutation p.E975* 0.48 TCGA-L9-A7SV-01 12 43769196 43769196 G A ADAMTS20 Missense_Mutation p.S1811F 0.24 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 12 43769199 43769199 G A ADAMTS20 Missense_Mutation p.T1810I 0.22 tolerated(0.17) benign(0.011) TCGA-L9-A7SV-01 12 45567351 45567351 G A PLEKHA8P1 RNA 0.17 TCGA-L9-A7SV-01 12 46322572 46322572 T A SCAF11 Silent p.T304T 0.31 TCGA-L9-A7SV-01 12 4714129 4714129 G T DYRK4 Silent p.L277L 0.55 TCGA-L9-A7SV-01 12 48723370 48723370 C A H1FNT Missense_Mutation p.A99E 0.50 tolerated(0.31) probably_damaging(0.962) TCGA-L9-A7SV-01 12 49176707 49176707 C A ADCY6 Missense_Mutation p.A171S 0.21 tolerated(0.28) benign(0.09) TCGA-L9-A7SV-01 12 49230441 49230441 C A DDX23 Missense_Mutation p.G383C 0.27 deleterious(0) probably_damaging(0.998) TCGA-L9-A7SV-01 12 49729971 49729971 G T C1QL4 Missense_Mutation p.P97Q 0.38 tolerated(0.54) possibly_damaging(0.647) TCGA-L9-A7SV-01 12 50152536 50152536 G C TMBIM6 Missense_Mutation p.W226C 0.26 tolerated(0.1) possibly_damaging(0.854) TCGA-L9-A7SV-01 12 51064995 51064995 G T DIP2B Missense_Mutation p.G152C 0.27 deleterious(0) possibly_damaging(0.88) TCGA-L9-A7SV-01 12 5153869 5153869 C T KCNA5 Missense_Mutation p.R186W 0.54 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 12 5153929 5153929 G T KCNA5 Missense_Mutation p.G206W 0.50 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 12 5154300 5154300 C G KCNA5 Silent p.T329T 0.67 TCGA-L9-A7SV-01 12 51585516 51585516 C A POU6F1 Silent p.G141G 0.58 TCGA-L9-A7SV-01 12 51865278 51865278 C A SLC4A8 Silent p.I622I 0.21 TCGA-L9-A7SV-01 12 52139812 52139812 A T SCN8A Silent p.L708L 0.34 TCGA-L9-A7SV-01 12 52281884 52281884 C A ANKRD33 5'UTR 0.24 TCGA-L9-A7SV-01 12 52448996 52448996 G C NR4A1 Intron 0.24 TCGA-L9-A7SV-01 12 53188049 53188049 T C KRT3 Missense_Mutation p.T238A 0.57 tolerated(0.32) benign(0.173) TCGA-L9-A7SV-01 12 57464625 57464625 C T TMEM194A Missense_Mutation p.E102K 0.26 deleterious(0.02) benign(0.091) TCGA-L9-A7SV-01 12 57843416 57843416 C A INHBC Silent p.R224R 0.48 TCGA-L9-A7SV-01 12 57969498 57969498 T C KIF5A Missense_Mutation p.Y661H 0.26 tolerated(0.42) benign(0.008) TCGA-L9-A7SV-01 12 58016675 58016675 C A SLC26A10 Silent p.S299S 0.46 TCGA-L9-A7SV-01 12 62261134 62261134 C A FAM19A2 Missense_Mutation p.G25W 0.09 tolerated(0.07) possibly_damaging(0.447) TCGA-L9-A7SV-01 12 70953102 70953102 G T PTPRB Intron 0.29 TCGA-L9-A7SV-01 12 72021558 72021558 G A ZFC3H1 Missense_Mutation p.A1368V 0.34 deleterious(0) benign(0.357) TCGA-L9-A7SV-01 12 72038763 72038763 C A ZFC3H1 Missense_Mutation p.Q391H 0.21 deleterious(0) probably_damaging(0.99) TCGA-L9-A7SV-01 12 72372794 72372794 G T TPH2 Nonsense_Mutation p.G290* 0.22 TCGA-L9-A7SV-01 12 72666948 72666948 G T TRHDE Silent p.R130R 0.27 TCGA-L9-A7SV-01 12 76783507 76783507 C A OSBPL8 Missense_Mutation p.V424F 0.25 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 12 76783508 76783508 C G OSBPL8 Silent p.V423V 0.25 TCGA-L9-A7SV-01 12 78400253 78400253 C A NAV3 Missense_Mutation p.P312H 0.20 deleterious(0) possibly_damaging(0.58) TCGA-L9-A7SV-01 12 78401075 78401075 G T NAV3 Missense_Mutation p.R586M 0.26 deleterious(0) possibly_damaging(0.718) TCGA-L9-A7SV-01 12 80626780 80626780 G T OTOGL Silent p.G231G 0.17 TCGA-L9-A7SV-01 12 80730203 80730203 C A OTOGL Silent p.S1528S 0.88 TCGA-L9-A7SV-01 12 80730314 80730314 C G OTOGL Missense_Mutation p.I1565M 0.17 deleterious(0) possibly_damaging(0.771) TCGA-L9-A7SV-01 12 81112769 81112769 C A MYF5 Missense_Mutation p.T236N 0.28 tolerated(0.38) benign(0.022) TCGA-L9-A7SV-01 12 81751891 81751891 G T PPFIA2 Silent p.G581G 0.73 TCGA-L9-A7SV-01 12 88530451 88530451 T G CEP290 Missense_Mutation p.E137A 0.16 possibly_damaging(0.592) TCGA-L9-A7SV-01 12 8987266 8987266 G C A2ML1 Missense_Mutation p.M157I 0.57 tolerated(0.27) benign(0.002) TCGA-L9-A7SV-01 12 9027068 9027068 G T A2ML1 Silent p.V1423V 0.60 TCGA-L9-A7SV-01 12 96077290 96077290 C A NTN4 Nonsense_Mutation p.G460* 0.33 TCGA-L9-A7SV-01 12 96300231 96300231 T A CCDC38 Splice_Site p.X102_splice 0.17 TCGA-L9-A7SV-01 12 97043812 97043812 C A C12orf55 Missense_Mutation p.H1612N 0.47 deleterious(0.02) possibly_damaging(0.654) TCGA-L9-A7SV-01 12 97306446 97306446 G T NEDD1 Intron 0.47 TCGA-L9-A7SV-01 12 98849547 98849547 G A SLC9A7P1 RNA 0.38 TCGA-L9-A7SV-01 12 99007549 99007549 C G IKBIP Missense_Mutation p.K289N 0.25 tolerated(0.05) probably_damaging(0.997) TCGA-L9-A7SV-01 12 99640476 99640476 C T ANKS1B Silent p.L641L 0.22 TCGA-L9-A7SV-01 13 25009223 25009223 T A PARP4 Silent p.S1352S 0.83 TCGA-L9-A7SV-01 13 28009300 28009300 G T GTF3A Missense_Mutation p.D302Y 0.43 deleterious(0) probably_damaging(0.992) TCGA-L9-A7SV-01 13 29599824 29599824 G T MTUS2 Missense_Mutation p.G340V 0.41 tolerated(0.08) benign(0.387) TCGA-L9-A7SV-01 13 31480611 31480611 C A MEDAG 5'UTR 0.50 TCGA-L9-A7SV-01 13 36049777 36049777 C A MAB21L1 Missense_Mutation p.V167L 0.43 tolerated(0.24) benign(0.09) TCGA-L9-A7SV-01 13 36396928 36396928 C A DCLK1 Missense_Mutation p.A498S 0.37 deleterious(0) possibly_damaging(0.709) TCGA-L9-A7SV-01 13 52586564 52586564 G T ALG11 Missense_Mutation p.G4C 0.83 tolerated_low_confidence(0.08) benign(0.229) TCGA-L9-A7SV-01 13 52604173 52604173 A T UTP14C Silent p.P411P 0.36 TCGA-L9-A7SV-01 13 52604648 52604648 G T UTP14C Missense_Mutation p.V570L 0.33 tolerated(0.07) benign(0.064) TCGA-L9-A7SV-01 13 52971671 52971671 T C THSD1 Silent p.K239K 0.37 TCGA-L9-A7SV-01 13 58207325 58207325 C A PCDH17 Silent p.A215A 0.27 TCGA-L9-A7SV-01 13 58208175 58208175 C A PCDH17 Missense_Mutation p.P499T 0.82 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 13 72049295 72049295 T A DACH1 Silent p.T689T 0.67 TCGA-L9-A7SV-01 13 72440219 72440219 G A DACH1 Missense_Mutation p.T230M 0.52 probably_damaging(1) TCGA-L9-A7SV-01 13 77817238 77817238 T G MYCBP2 Missense_Mutation p.K824T 0.72 probably_damaging(0.979) TCGA-L9-A7SV-01 13 84453623 84453623 G A SLITRK1 Missense_Mutation p.H674Y 0.55 tolerated(0.06) possibly_damaging(0.51) TCGA-L9-A7SV-01 14 101004366 101004366 C T BEGAIN Silent p.S574S 0.33 TCGA-L9-A7SV-01 14 105353026 105353026 G T CEP170B Missense_Mutation p.G817V 0.47 tolerated(0.32) benign(0.049) TCGA-L9-A7SV-01 14 105419372 105419372 G T AHNAK2 Missense_Mutation p.P806T 0.36 probably_damaging(0.961) TCGA-L9-A7SV-01 14 105521817 105521817 C A GPR132 5'UTR 0.44 TCGA-L9-A7SV-01 14 106967321 106967321 C A IGHV1-46 Missense_Mutation p.G27W 0.76 deleterious(0.02) possibly_damaging(0.797) TCGA-L9-A7SV-01 14 107048805 107048805 C G IGHV3-53 Missense_Mutation p.S72T 0.21 tolerated_low_confidence(0.27) benign(0.005) TCGA-L9-A7SV-01 14 107218927 107218927 C T IGHV3-74 Missense_Mutation p.G34R 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.63) TCGA-L9-A7SV-01 14 21250133 21250133 G A RNASE6 Missense_Mutation p.C92Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 14 21624050 21624050 G T OR5AU1 Silent p.I45I 0.29 TCGA-L9-A7SV-01 14 21838632 21838632 T C SUPT16H Missense_Mutation p.S116G 0.26 tolerated(0.48) benign(0) TCGA-L9-A7SV-01 14 22090593 22090593 G A TRAV1-1 Missense_Mutation p.A67T 0.08 tolerated(0.47) benign(0.012) TCGA-L9-A7SV-01 14 23523504 23523504 C G CDH24 Missense_Mutation p.G273A 0.17 tolerated(0.28) benign(0.033) TCGA-L9-A7SV-01 14 24108146 24108146 A C DHRS2 Missense_Mutation p.S25R 0.28 deleterious(0.01) possibly_damaging(0.618) TCGA-L9-A7SV-01 14 24768327 24768327 G T DHRS1 5'UTR 0.12 TCGA-L9-A7SV-01 14 25043617 25043617 G T CTSG Missense_Mutation p.T143N 0.44 deleterious(0.04) probably_damaging(0.994) TCGA-L9-A7SV-01 14 25043648 25043648 G A CTSG Nonsense_Mutation p.Q133* 0.37 TCGA-L9-A7SV-01 14 33005003 33005003 A T AKAP6 Missense_Mutation p.T190S 0.27 deleterious(0.04) benign(0.341) TCGA-L9-A7SV-01 14 34243737 34243737 G C NPAS3 Splice_Site p.X349_splice 0.29 TCGA-L9-A7SV-01 14 34419944 34419944 G A EGLN3 Silent p.H5H 0.23 TCGA-L9-A7SV-01 14 39788493 39788493 G T CTAGE5 Missense_Mutation p.R519I 0.44 deleterious(0) probably_damaging(0.956) TCGA-L9-A7SV-01 14 47120365 47120365 G T RPL10L Missense_Mutation p.P192H 0.29 deleterious(0.02) possibly_damaging(0.671) TCGA-L9-A7SV-01 14 47504275 47504275 G T MDGA2 Silent p.T586T 0.23 TCGA-L9-A7SV-01 14 52194554 52194554 C T FRMD6 Missense_Mutation p.A559V 0.34 deleterious(0.05) probably_damaging(0.997) TCGA-L9-A7SV-01 14 52520449 52520449 C G NID2 Missense_Mutation p.G426A 0.25 tolerated(0.33) benign(0.004) TCGA-L9-A7SV-01 14 52781680 52781680 C A PTGER2 Silent p.I138I 0.26 TCGA-L9-A7SV-01 14 52781702 52781702 C A PTGER2 Missense_Mutation p.R146S 0.23 tolerated(0.05) benign(0.396) TCGA-L9-A7SV-01 14 55004873 55004873 G T CGRRF1 Silent p.V257V 0.26 TCGA-L9-A7SV-01 14 57268684 57268684 G T OTX2 Silent p.P221P 0.11 TCGA-L9-A7SV-01 14 60213090 60213090 C T RTN1 Silent p.Q117Q 0.33 TCGA-L9-A7SV-01 14 61113088 61113088 G T SIX1 Silent p.P256P 0.27 TCGA-L9-A7SV-01 14 61180280 61180280 T A SIX4 Missense_Mutation p.S731C 0.32 deleterious_low_confidence(0) benign(0.293) TCGA-L9-A7SV-01 14 61510221 61510221 G T SLC38A6 Missense_Mutation p.E248D 0.17 deleterious(0) possibly_damaging(0.693) TCGA-L9-A7SV-01 14 61917652 61917652 G T PRKCH Silent p.L265L 0.33 TCGA-L9-A7SV-01 14 62242899 62242899 G T SNAPC1 Missense_Mutation p.L207F 0.16 deleterious(0) probably_damaging(0.994) TCGA-L9-A7SV-01 14 68192858 68192858 G C RDH12 Missense_Mutation p.G145A 0.31 tolerated(0.06) benign(0.192) TCGA-L9-A7SV-01 14 69704367 69704367 G T EXD2 Silent p.L456L 0.39 TCGA-L9-A7SV-01 14 70461185 70461185 A T SMOC1 Missense_Mutation p.I218L 0.60 tolerated(0.68) benign(0.01) TCGA-L9-A7SV-01 14 70515479 70515479 C G SLC8A3 Intron 0.28 TCGA-L9-A7SV-01 14 70712770 70712770 C A ADAM21P1 RNA 0.14 TCGA-L9-A7SV-01 14 71197426 71197426 G T MAP3K9 Missense_Mutation p.R1010S 0.28 deleterious(0) probably_damaging(0.997) TCGA-L9-A7SV-01 14 72171987 72171987 G T SIPA1L1 Missense_Mutation p.R1253L 0.44 tolerated(0.08) probably_damaging(0.987) TCGA-L9-A7SV-01 14 73464765 73464765 G A ZFYVE1 Nonsense_Mutation p.Q248* 0.49 TCGA-L9-A7SV-01 14 74358849 74358849 G T ZNF410 5'UTR 0.60 TCGA-L9-A7SV-01 14 74976012 74976012 G A LTBP2 Missense_Mutation p.T1111M 0.63 deleterious(0.02) probably_damaging(1) TCGA-L9-A7SV-01 14 75248353 75248353 C T YLPM1 Missense_Mutation p.P536L 0.25 unknown(0) TCGA-L9-A7SV-01 14 75265061 75265061 A G YLPM1 Missense_Mutation p.R1021G 0.43 probably_damaging(0.974) TCGA-L9-A7SV-01 14 76238085 76238085 A T TTLL5 Missense_Mutation p.Q675L 0.27 deleterious(0) probably_damaging(0.978) TCGA-L9-A7SV-01 14 77270248 77270248 C T ANGEL1 Missense_Mutation p.G463E 0.28 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 14 81952030 81952030 C G SEL1L Missense_Mutation p.R620T 0.30 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 14 88792801 88792801 C G KCNK10 5'Flank 0.46 TCGA-L9-A7SV-01 14 90650923 90650923 G A KCNK13 Missense_Mutation p.G268D 0.34 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 14 92900286 92900286 C G SLC24A4 Missense_Mutation p.S91C 0.39 deleterious(0) benign(0.03) TCGA-L9-A7SV-01 14 93199081 93199081 G A LGMN Silent p.A17A 0.29 TCGA-L9-A7SV-01 14 93199085 93199085 C A LGMN Missense_Mutation p.G16V 0.30 tolerated(0.08) benign(0.197) TCGA-L9-A7SV-01 14 93408209 93408209 G T ITPK1 Missense_Mutation p.N314K 0.86 tolerated(0.09) possibly_damaging(0.583) TCGA-L9-A7SV-01 14 94107551 94107551 C A UNC79 Missense_Mutation p.P1816H 0.76 deleterious_low_confidence(0) probably_damaging(1) TCGA-L9-A7SV-01 14 94847422 94847422 C A SERPINA1 Missense_Mutation p.D235Y 0.45 deleterious(0) probably_damaging(0.994) TCGA-L9-A7SV-01 14 96134629 96134629 G A TCL6 Intron 0.45 TCGA-L9-A7SV-01 14 96730898 96730898 C A BDKRB1 Silent p.G293G 0.62 TCGA-L9-A7SV-01 14 99724081 99724081 C A BCL11B Missense_Mutation p.D52Y 0.88 deleterious(0) possibly_damaging(0.49) TCGA-L9-A7SV-01 15 100636615 100636615 C A ADAMTS17 Missense_Mutation p.D695Y 0.44 deleterious(0) probably_damaging(0.931) TCGA-L9-A7SV-01 15 100801721 100801721 C A ADAMTS17 Missense_Mutation p.D332Y 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-L9-A7SV-01 15 101933558 101933558 C A PCSK6 Silent p.S355S 0.37 TCGA-L9-A7SV-01 15 102346672 102346672 C T OR4F6 Silent p.V250V 0.39 TCGA-L9-A7SV-01 15 20657771 20657771 G T HERC2P3 RNA 0.88 TCGA-L9-A7SV-01 15 23261859 23261859 C A GOLGA8I Missense_Mutation p.A324D 0.43 deleterious(0.04) benign(0.38) TCGA-L9-A7SV-01 15 25417842 25417842 C A SNORD115-2 RNA 0.28 TCGA-L9-A7SV-01 15 28000584 28000584 C A OCA2 Missense_Mutation p.V823F 0.48 deleterious(0) possibly_damaging(0.9) TCGA-L9-A7SV-01 15 32976825 32976825 G T SCG5 Missense_Mutation p.Q148H 0.64 deleterious(0) probably_damaging(0.996) TCGA-L9-A7SV-01 15 35044985 35044985 G T GJD2 Silent p.L220L 0.67 TCGA-L9-A7SV-01 15 44053654 44053654 G T PDIA3 Nonsense_Mutation p.G133* 0.56 TCGA-L9-A7SV-01 15 45003781 45003782 CT - B2M Frame_Shift_Del p.L15Ffs*41 0.49 TCGA-L9-A7SV-01 15 48499912 48499912 G T SLC12A1 5'UTR 0.27 TCGA-L9-A7SV-01 15 49089881 49089881 G A CEP152 Silent p.L80L 0.17 TCGA-L9-A7SV-01 15 49170554 49170554 G T EID1 Nonsense_Mutation p.E61* 0.59 TCGA-L9-A7SV-01 15 50534807 50534807 C A HDC Missense_Mutation p.D547Y 0.44 deleterious_low_confidence(0) benign(0.157) TCGA-L9-A7SV-01 15 62214909 62214909 G A VPS13C Missense_Mutation p.P2221L 0.35 deleterious(0.03) benign(0.341) TCGA-L9-A7SV-01 15 63555848 63555848 C T RAB8B 3'UTR 0.12 TCGA-L9-A7SV-01 15 63845955 63845955 G T USP3 Missense_Mutation p.G109V 0.41 deleterious(0.01) possibly_damaging(0.642) TCGA-L9-A7SV-01 15 63930698 63930698 C A HERC1 Missense_Mutation p.W4002L 0.51 probably_damaging(0.998) TCGA-L9-A7SV-01 15 64968323 64968323 G T ZNF609 Silent p.P1090P 0.43 TCGA-L9-A7SV-01 15 65502108 65502108 C A CILP 5'UTR 0.25 TCGA-L9-A7SV-01 15 70346919 70346919 T A TLE3 Missense_Mutation p.T565S 0.42 tolerated(0.11) benign(0.235) TCGA-L9-A7SV-01 15 71952967 71952967 G T THSD4 Silent p.V417V 0.35 TCGA-L9-A7SV-01 15 72030070 72030070 G T THSD4 Splice_Site p.X544_splice 0.47 TCGA-L9-A7SV-01 15 73009140 73009140 A T BBS4 Missense_Mutation p.K118N 0.44 deleterious(0.01) possibly_damaging(0.644) TCGA-L9-A7SV-01 15 75979870 75979870 C T CSPG4 Missense_Mutation p.R1179Q 0.40 tolerated(0.13) benign(0.035) TCGA-L9-A7SV-01 15 77771574 77771574 C T HMG20A Missense_Mutation p.H321Y 0.39 deleterious(0.04) benign(0.248) TCGA-L9-A7SV-01 15 78471970 78471970 C A ACSBG1 Missense_Mutation p.R469L 0.45 deleterious(0.03) possibly_damaging(0.564) TCGA-L9-A7SV-01 15 79067003 79067003 C A ADAMTS7 Missense_Mutation p.K613N 0.35 deleterious(0.02) probably_damaging(0.934) TCGA-L9-A7SV-01 15 81181065 81181065 C A KIAA1199 Silent p.R298R 0.35 TCGA-L9-A7SV-01 15 81592702 81592702 C A IL16 Missense_Mutation p.A1012D 0.39 deleterious(0.05) benign(0.002) TCGA-L9-A7SV-01 15 83932315 83932315 G T BNC1 Nonsense_Mutation p.S563* 0.38 TCGA-L9-A7SV-01 15 84257453 84257453 G T SH3GL3 Missense_Mutation p.K256N 0.30 tolerated(0.36) benign(0.051) TCGA-L9-A7SV-01 15 86064804 86064804 C T AKAP13 Missense_Mutation p.P60L 0.37 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 15 86807656 86807656 G T AGBL1 Missense_Mutation p.R372S 0.45 tolerated(0.75) benign(0.002) TCGA-L9-A7SV-01 15 91832811 91832811 C A SV2B Missense_Mutation p.S590Y 0.35 deleterious(0) possibly_damaging(0.714) TCGA-L9-A7SV-01 16 11647391 11647391 C A LITAF Silent p.L125L 0.36 TCGA-L9-A7SV-01 16 11770025 11770025 G A SNN Missense_Mutation p.R37Q 0.33 deleterious_low_confidence(0.03) possibly_damaging(0.626) TCGA-L9-A7SV-01 16 11794332 11794332 T A TXNDC11 Missense_Mutation p.L294F 0.36 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 16 1510477 1510477 C A CLCN7 Missense_Mutation p.W179L 0.21 deleterious(0.03) benign(0.047) TCGA-L9-A7SV-01 16 15797863 15797863 G T MYH11 Silent p.T1975T 0.23 TCGA-L9-A7SV-01 16 16173234 16173234 G A ABCC1 Missense_Mutation p.A672T 0.32 tolerated(0.14) benign(0.003) TCGA-L9-A7SV-01 16 17211674 17211674 C A XYLT1 Missense_Mutation p.D796Y 0.25 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 16 18847471 18847471 C A SMG1 Missense_Mutation p.S2614I 0.31 tolerated(0.15) possibly_damaging(0.878) TCGA-L9-A7SV-01 16 19548614 19548614 G C CCP110 Silent p.L541L 0.27 TCGA-L9-A7SV-01 16 20327295 20327295 C A GP2 Missense_Mutation p.G498V 0.17 deleterious(0) probably_damaging(0.997) TCGA-L9-A7SV-01 16 20556578 20556578 A G ACSM2B Silent p.V394V 0.14 TCGA-L9-A7SV-01 16 20556580 20556580 C T ACSM2B Missense_Mutation p.V394I 0.15 tolerated(1) benign(0.007) TCGA-L9-A7SV-01 16 20648500 20648500 G T ACSM1 Intron 0.42 TCGA-L9-A7SV-01 16 20702476 20702476 C T ACSM1 Missense_Mutation p.G12D 0.36 tolerated(0.34) benign(0.021) TCGA-L9-A7SV-01 16 21011682 21011682 C A DNAH3 Silent p.T2095T 0.62 TCGA-L9-A7SV-01 16 23702320 23702320 G T ERN2 Silent p.L919L 0.21 TCGA-L9-A7SV-01 16 23768936 23768936 C A CHP2 3'UTR 0.33 TCGA-L9-A7SV-01 16 24881221 24881221 G T SLC5A11 Splice_Site p.X70_splice 0.67 TCGA-L9-A7SV-01 16 26147087 26147087 G T HS3ST4 Missense_Mutation p.D297Y 0.58 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 16 27373960 27373960 G A IL4R Silent p.E429E 0.22 TCGA-L9-A7SV-01 16 27460222 27460222 C A IL21R Missense_Mutation p.P412Q 0.53 tolerated(0.32) benign(0.2) TCGA-L9-A7SV-01 16 27499885 27499885 G T GTF3C1 Silent p.L1167L 0.29 TCGA-L9-A7SV-01 16 27517433 27517433 C T GTF3C1 Silent p.G519G 0.48 TCGA-L9-A7SV-01 16 27772740 27772740 A T KIAA0556 Missense_Mutation p.Q1213L 0.56 tolerated(0.12) benign(0.105) TCGA-L9-A7SV-01 16 29113446 29113446 C T RRN3P2 RNA 0.26 TCGA-L9-A7SV-01 16 30490775 30490775 C A ITGAL Nonsense_Mutation p.S190* 0.44 TCGA-L9-A7SV-01 16 30750050 30750050 G T SRCAP Missense_Mutation p.G2897W 0.24 unknown(0) TCGA-L9-A7SV-01 16 31051066 31051066 G T STX4 Missense_Mutation p.C279F 0.28 deleterious(0.04) probably_damaging(0.997) TCGA-L9-A7SV-01 16 31154992 31154992 C A PRSS36 Missense_Mutation p.G296V 0.32 deleterious(0.04) benign(0.257) TCGA-L9-A7SV-01 16 31194082 31194082 G T FUS Intron 0.15 TCGA-L9-A7SV-01 16 31286938 31286938 T A ITGAM Silent p.R309R 0.22 TCGA-L9-A7SV-01 16 31374530 31374530 C A ITGAX Silent p.G515G 0.31 TCGA-L9-A7SV-01 16 31471198 31471198 G T ARMC5 Missense_Mutation p.S118I 0.67 tolerated_low_confidence(0.14) unknown(0) TCGA-L9-A7SV-01 16 31477400 31477400 G T ARMC5 Silent p.R666R 0.60 TCGA-L9-A7SV-01 16 3306444 3306444 G T MEFV Silent p.A48A 0.28 TCGA-L9-A7SV-01 16 3458578 3458578 A G ZNF174 Missense_Mutation p.R295G 0.22 tolerated(0.12) benign(0.326) TCGA-L9-A7SV-01 16 3554824 3554824 G T CLUAP1 Missense_Mutation p.V43L 0.29 tolerated(0.08) benign(0.062) TCGA-L9-A7SV-01 16 3831213 3831213 C A CREBBP Silent p.G556G 0.71 TCGA-L9-A7SV-01 16 48180404 48180404 A C ABCC12 5'UTR 0.40 TCGA-L9-A7SV-01 16 49430416 49430416 C A C16orf78 Silent p.P159P 0.34 TCGA-L9-A7SV-01 16 51173381 51173381 C A SALL1 Missense_Mutation p.A918S 0.58 tolerated(0.09) probably_damaging(0.994) TCGA-L9-A7SV-01 16 51174702 51174702 G T SALL1 Missense_Mutation p.F477L 0.85 deleterious(0) possibly_damaging(0.844) TCGA-L9-A7SV-01 16 53692703 53692703 C A RPGRIP1L Missense_Mutation p.R444L 0.38 deleterious(0.02) benign(0.048) TCGA-L9-A7SV-01 16 55690777 55690777 G A SLC6A2 Silent p.E57E 0.24 TCGA-L9-A7SV-01 16 56436899 56436899 G A AMFR Silent p.A324A 0.34 TCGA-L9-A7SV-01 16 56903716 56903716 C A SLC12A3 Missense_Mutation p.T194N 0.37 deleterious(0) benign(0.31) TCGA-L9-A7SV-01 16 57181440 57181440 C G CPNE2 Intron 0.74 TCGA-L9-A7SV-01 16 57714214 57714214 G T GPR97 Silent p.T235T 0.33 TCGA-L9-A7SV-01 16 67679959 67679959 G T RLTPR Missense_Mutation p.M75I 0.38 tolerated(0.9) benign(0.006) TCGA-L9-A7SV-01 16 68363044 68363044 A G PRMT7 Missense_Mutation p.N120D 0.44 tolerated(0.05) benign(0.41) TCGA-L9-A7SV-01 16 71317630 71317630 T A CMTR2 Nonsense_Mutation p.K732* 0.80 TCGA-L9-A7SV-01 16 71610155 71610155 G T TAT Missense_Mutation p.P55H 0.41 deleterious(0) probably_damaging(0.994) TCGA-L9-A7SV-01 16 71823279 71823279 C A AP1G1 Missense_Mutation p.R35L 0.30 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 16 72158741 72158741 G T PMFBP1 Silent p.A838A 0.75 TCGA-L9-A7SV-01 16 73127045 73127045 A G HCCAT5 RNA 0.80 TCGA-L9-A7SV-01 16 74394530 74394530 C A RP11-252A24.2 Splice_Site 0.32 TCGA-L9-A7SV-01 16 75513268 75513268 G A CHST6 Silent p.C153C 0.39 TCGA-L9-A7SV-01 16 76389318 76389318 T A CNTNAP4 Nonsense_Mutation p.Y75* 0.70 TCGA-L9-A7SV-01 16 76389319 76389319 G A CNTNAP4 Missense_Mutation p.G76S 0.70 tolerated(0.16) probably_damaging(0.999) TCGA-L9-A7SV-01 16 77232110 77232110 G A MON1B Missense_Mutation p.D517N 0.36 tolerated(0.07) possibly_damaging(0.475) TCGA-L9-A7SV-01 16 81095104 81095104 G T C16orf46 Missense_Mutation p.P284T 0.37 tolerated(0.1) benign(0.354) TCGA-L9-A7SV-01 16 81388107 81388107 G T GAN Missense_Mutation p.G127V 0.80 tolerated(0.08) benign(0.085) TCGA-L9-A7SV-01 16 87677996 87677996 C A JPH3 Missense_Mutation p.T172N 0.80 deleterious(0.03) benign(0.004) TCGA-L9-A7SV-01 16 87677997 87677997 C G JPH3 Silent p.T172T 0.80 TCGA-L9-A7SV-01 16 87742982 87742982 C T KLHDC4 Missense_Mutation p.V446I 0.44 tolerated(0.11) benign(0.277) TCGA-L9-A7SV-01 16 89764324 89764324 C G SPATA2L Missense_Mutation p.L231F 0.35 tolerated(0.2) benign(0.317) TCGA-L9-A7SV-01 16 9857650 9857650 C A GRIN2A Missense_Mutation p.D1251Y 0.42 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 17 10359034 10359034 C G MYH4 Missense_Mutation p.E691Q 0.27 tolerated(0.64) benign(0.083) TCGA-L9-A7SV-01 17 10447331 10447331 C A MYH2 Missense_Mutation p.G179V 0.28 deleterious(0) probably_damaging(0.995) TCGA-L9-A7SV-01 17 10535845 10535845 C A MYH3 Missense_Mutation p.R1635L 0.59 deleterious(0.01) benign(0.198) TCGA-L9-A7SV-01 17 11583159 11583159 G T DNAH9 Nonsense_Mutation p.E1147* 0.29 TCGA-L9-A7SV-01 17 11790162 11790162 T A DNAH9 Silent p.T3664T 0.22 TCGA-L9-A7SV-01 17 15341218 15341218 C A CDRT4 Missense_Mutation p.A110S 0.18 tolerated(0.75) benign(0.008) TCGA-L9-A7SV-01 17 1542118 1542118 C A SCARF1 Missense_Mutation p.R449L 0.35 tolerated(0.1) benign(0.393) TCGA-L9-A7SV-01 17 1543289 1543289 G T SCARF1 Silent p.G352G 0.28 TCGA-L9-A7SV-01 17 17699150 17699150 G T RAI1 Missense_Mutation p.G963V 0.19 tolerated(0.23) benign(0.003) TCGA-L9-A7SV-01 17 18062661 18062661 G T MYO15A Missense_Mutation p.A3077S 0.21 unknown(0) TCGA-L9-A7SV-01 17 1840248 1840248 C A RTN4RL1 Missense_Mutation p.G290C 0.33 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 17 18422877 18422877 C A CTD-2303H24.2 RNA 0.96 TCGA-L9-A7SV-01 17 2239813 2239813 G T TSR1 5'UTR 0.37 TCGA-L9-A7SV-01 17 2310402 2310403 CC A AC006435.1 Frame_Shift_Del p.V124Ffs*16 0.21 TCGA-L9-A7SV-01 17 25752517 25752517 G A TBC1D3P5 RNA 0.47 TCGA-L9-A7SV-01 17 26370162 26370162 G T NLK Missense_Mutation p.G88V 0.11 tolerated_low_confidence(0.16) benign(0.172) TCGA-L9-A7SV-01 17 27434199 27434199 C A MYO18A Missense_Mutation p.D1114Y 0.53 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 17 27857542 27857542 G T TAOK1 Missense_Mutation p.V756F 0.15 tolerated(0.07) benign(0.021) TCGA-L9-A7SV-01 17 3100956 3100956 C A OR1A2 Silent p.A48A 0.29 TCGA-L9-A7SV-01 17 31348263 31348263 T A ASIC2 Missense_Mutation p.K472M 0.13 deleterious(0) probably_damaging(0.997) TCGA-L9-A7SV-01 17 32953891 32953891 C T TMEM132E Silent p.I181I 0.38 TCGA-L9-A7SV-01 17 33463516 33463516 C G NLE1 Missense_Mutation p.G277R 0.17 deleterious(0) probably_damaging(0.998) TCGA-L9-A7SV-01 17 33585887 33585887 G T SLFN5 Missense_Mutation p.A60S 0.39 deleterious(0.05) possibly_damaging(0.585) TCGA-L9-A7SV-01 17 33769072 33769072 C A SLFN13 Nonsense_Mutation p.E478* 0.24 TCGA-L9-A7SV-01 17 34499221 34499221 C G TBC1D3B Missense_Mutation p.G164R 0.10 tolerated(0.05) probably_damaging(0.993) TCGA-L9-A7SV-01 17 35913784 35913784 C A SYNRG Missense_Mutation p.G681C 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.698) TCGA-L9-A7SV-01 17 36104663 36104663 C A HNF1B Missense_Mutation p.K71N 0.16 tolerated(0.09) possibly_damaging(0.513) TCGA-L9-A7SV-01 17 36358961 36358961 A G RP11-1407O15.2 Missense_Mutation p.Y244H 0.05 TCGA-L9-A7SV-01 17 3717615 3717615 C A C17orf85 Splice_Site p.X543_splice 0.25 TCGA-L9-A7SV-01 17 38140681 38140681 G T PSMD3 Missense_Mutation p.G119C 0.36 deleterious(0.02) possibly_damaging(0.894) TCGA-L9-A7SV-01 17 3846694 3846694 G T ATP2A3 Silent p.A470A 0.33 TCGA-L9-A7SV-01 17 38487464 38487464 G T RARA 5'UTR 0.40 TCGA-L9-A7SV-01 17 38911445 38911445 C A KRT25 Nonsense_Mutation p.G27* 0.29 TCGA-L9-A7SV-01 17 38911446 38911446 C A KRT25 Silent p.G26G 0.28 TCGA-L9-A7SV-01 17 38975401 38975401 G T KRT10 Silent p.G462G 0.50 TCGA-L9-A7SV-01 17 39388891 39388891 C T KRTAP9-3 Silent p.C46C 0.16 TCGA-L9-A7SV-01 17 39580207 39580207 T A KRT37 Intron 0.22 TCGA-L9-A7SV-01 17 39623520 39623520 G T KRT32 Silent p.R20R 0.22 TCGA-L9-A7SV-01 17 39644581 39644581 C A KRT36 Nonsense_Mutation p.E205* 0.56 TCGA-L9-A7SV-01 17 39646084 39646084 G T KRT36 Silent p.S11S 0.47 TCGA-L9-A7SV-01 17 40837378 40837378 C T CNTNAP1 Nonsense_Mutation p.Q219* 0.24 TCGA-L9-A7SV-01 17 40932814 40932814 A T WNK4 Missense_Mutation p.Q33L 0.39 tolerated_low_confidence(0.13) unknown(0) TCGA-L9-A7SV-01 17 43013509 43013509 C A KIF18B Silent p.L68L 0.51 TCGA-L9-A7SV-01 17 43481692 43481692 T A ARHGAP27 Silent p.A133A 0.17 TCGA-L9-A7SV-01 17 43884429 43884429 C T CRHR1 Silent p.H29H 0.56 TCGA-L9-A7SV-01 17 45362041 45362041 C A ITGB3 Silent p.A198A 0.50 TCGA-L9-A7SV-01 17 45362042 45362042 C A ITGB3 Missense_Mutation p.L199I 0.50 tolerated(0.91) benign(0.005) TCGA-L9-A7SV-01 17 4536467 4536467 C A ALOX15 Silent p.A464A 0.62 TCGA-L9-A7SV-01 17 47656623 47656623 C T NXPH3 Silent p.Y240Y 0.24 TCGA-L9-A7SV-01 17 48603365 48603365 G T MYCBPAP Nonsense_Mutation p.E679* 0.17 TCGA-L9-A7SV-01 17 48745040 48745040 G T ABCC3 Missense_Mutation p.Q519H 0.62 deleterious(0.02) benign(0.049) TCGA-L9-A7SV-01 17 48917814 48917814 C G WFIKKN2 Missense_Mutation p.P389A 0.16 deleterious(0.01) probably_damaging(0.982) TCGA-L9-A7SV-01 17 5076185 5076185 C A USP6 Missense_Mutation p.P1378Q 0.48 deleterious_low_confidence(0) benign(0.299) TCGA-L9-A7SV-01 17 51901201 51901201 C T KIF2B Silent p.A269A 0.45 TCGA-L9-A7SV-01 17 51902455 51902455 C T KIF2B 3'UTR 0.24 TCGA-L9-A7SV-01 17 56327910 56327910 G T LPO Silent p.L236L 0.37 TCGA-L9-A7SV-01 17 56435463 56435463 G T RNF43 Nonsense_Mutation p.Y558* 0.21 TCGA-L9-A7SV-01 17 56437583 56437583 C A RNF43 Missense_Mutation p.E293D 0.12 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 17 56440641 56440641 C A RNF43 Missense_Mutation p.A193S 0.27 tolerated(0.17) benign(0.042) TCGA-L9-A7SV-01 17 56599263 56599263 G - SEPT4 Intron 0.24 TCGA-L9-A7SV-01 17 58711232 58711232 G T PPM1D Silent p.G240G 0.37 TCGA-L9-A7SV-01 17 59545000 59545000 C G TBX4 Missense_Mutation p.H177Q 0.11 tolerated(0.06) possibly_damaging(0.896) TCGA-L9-A7SV-01 17 59560788 59560788 C A TBX4 Missense_Mutation p.L517I 0.15 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-L9-A7SV-01 17 60112936 60112936 C T MED13 Silent p.L168L 0.25 TCGA-L9-A7SV-01 17 60505177 60505177 T A METTL2A Missense_Mutation p.F196Y 0.13 deleterious(0.02) possibly_damaging(0.6) TCGA-L9-A7SV-01 17 60742103 60742103 G A MRC2 Missense_Mutation p.A105T 0.10 tolerated(0.27) benign(0.002) TCGA-L9-A7SV-01 17 60743929 60743929 G T MRC2 Missense_Mutation p.G270C 0.50 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 17 60744859 60744859 A C MRC2 Missense_Mutation p.K361T 0.11 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 17 61561215 61561215 T A ACE Missense_Mutation p.F531Y 0.29 deleterious(0.04) probably_damaging(1) TCGA-L9-A7SV-01 17 61613095 61613095 G T KCNH6 Missense_Mutation p.K389N 0.28 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 17 61619747 61619747 T C KCNH6 Silent p.F700F 0.16 TCGA-L9-A7SV-01 17 61660935 61660935 G T DCAF7 Intron 0.12 TCGA-L9-A7SV-01 17 61666370 61666370 C T DCAF7 Missense_Mutation p.H89Y 0.09 tolerated(0.46) benign(0.065) TCGA-L9-A7SV-01 17 61949725 61949725 C G CSH2 Intron 0.37 TCGA-L9-A7SV-01 17 63739208 63739208 C A CEP112 Missense_Mutation p.R862I 0.16 deleterious(0.01) possibly_damaging(0.804) TCGA-L9-A7SV-01 17 64880762 64880762 C A CACNG5 Missense_Mutation p.S185Y 0.09 deleterious(0) probably_damaging(0.981) TCGA-L9-A7SV-01 17 65026904 65026904 G T CACNG4 Missense_Mutation p.R256S 0.30 deleterious(0.03) possibly_damaging(0.889) TCGA-L9-A7SV-01 17 66898975 66898975 A G ABCA8 Silent p.Y841Y 0.16 TCGA-L9-A7SV-01 17 66915483 66915483 C A ABCA8 Missense_Mutation p.A583S 0.12 deleterious(0.01) probably_damaging(1) TCGA-L9-A7SV-01 17 67008177 67008177 C A ABCA9 Missense_Mutation p.W1029C 0.14 tolerated(0.07) benign(0.076) TCGA-L9-A7SV-01 17 67197793 67197793 C A ABCA10 Silent p.G341G 0.15 TCGA-L9-A7SV-01 17 67290821 67290821 C A ABCA5 Missense_Mutation p.K490N 0.10 tolerated(0.11) benign(0.021) TCGA-L9-A7SV-01 17 71027757 71027757 C A SLC39A11 Missense_Mutation p.A82S 0.39 tolerated(0.16) possibly_damaging(0.646) TCGA-L9-A7SV-01 17 72310351 72310351 C G DNAI2 Missense_Mutation p.A605G 0.11 tolerated_low_confidence(0.29) unknown(0) TCGA-L9-A7SV-01 17 72537802 72537802 C T CD300C Missense_Mutation p.A201T 0.25 deleterious(0.02) possibly_damaging(0.75) TCGA-L9-A7SV-01 17 72588201 72588201 C T C17orf77 Silent p.L6L 0.10 TCGA-L9-A7SV-01 17 72739309 72739309 C A RAB37 Silent p.T101T 0.55 TCGA-L9-A7SV-01 17 73094157 73094157 G T SLC16A5 Missense_Mutation p.G75V 0.14 tolerated(0.12) benign(0.049) TCGA-L9-A7SV-01 17 73814218 73814218 G T UNK Missense_Mutation p.S447I 0.13 tolerated(0.05) benign(0.074) TCGA-L9-A7SV-01 17 74018523 74018523 C A EVPL Missense_Mutation p.G193W 0.50 deleterious(0) probably_damaging(0.998) TCGA-L9-A7SV-01 17 74527192 74527192 G T CYGB Silent p.A136A 0.22 TCGA-L9-A7SV-01 17 74717951 74717951 G A JMJD6 Silent p.S290S 0.12 TCGA-L9-A7SV-01 17 74717952 74717952 C A JMJD6 Missense_Mutation p.S290I 0.12 deleterious(0) probably_damaging(0.993) TCGA-L9-A7SV-01 17 7577120 7577120 C A TP53 Missense_Mutation p.R273L 0.35 deleterious(0) probably_damaging(0.993) TCGA-L9-A7SV-01 17 7578266 7578266 T A TP53 Missense_Mutation p.I195F 0.50 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 17 76120118 76120118 G A TMC6 Missense_Mutation p.S345F 0.13 tolerated(1) benign(0) TCGA-L9-A7SV-01 17 76167988 76167988 G T SYNGR2 Nonsense_Mutation p.E216* 0.12 TCGA-L9-A7SV-01 17 7623102 7623102 C A DNAH2 Missense_Mutation p.S17Y 0.21 benign(0.009) TCGA-L9-A7SV-01 17 76482487 76482487 C A DNAH17 Missense_Mutation p.R2293L 0.48 benign(0.173) TCGA-L9-A7SV-01 17 7750427 7750427 A G KDM6B Missense_Mutation p.Q305R 0.21 unknown(0) TCGA-L9-A7SV-01 17 78069155 78069155 G T CCDC40 Nonsense_Mutation p.E976* 0.35 TCGA-L9-A7SV-01 17 78188529 78188529 C A SGSH Missense_Mutation p.V131L 0.07 deleterious(0.04) benign(0.38) TCGA-L9-A7SV-01 17 78210787 78210787 G T SLC26A11 Missense_Mutation p.G266V 0.09 deleterious(0.02) possibly_damaging(0.566) TCGA-L9-A7SV-01 17 78237453 78237453 G T RNF213 5'UTR 0.13 TCGA-L9-A7SV-01 17 7917985 7917985 T A GUCY2D Missense_Mutation p.Y827N 0.32 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 17 80037414 80037414 T C FASN Missense_Mutation p.K2406R 0.13 tolerated(0.47) benign(0.001) TCGA-L9-A7SV-01 17 80274570 80274570 C A CD7 Missense_Mutation p.G124C 0.54 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 17 80332526 80332526 C A UTS2R Missense_Mutation p.A109D 0.13 deleterious(0.02) possibly_damaging(0.821) TCGA-L9-A7SV-01 17 80606282 80606282 T A WDR45B 5'UTR 0.13 TCGA-L9-A7SV-01 17 8108705 8108705 C A AURKB Missense_Mutation p.R230S 0.28 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 17 8159828 8159828 G T PFAS Intron 0.32 TCGA-L9-A7SV-01 17 8701482 8701482 T A MFSD6L Silent p.R319R 0.70 TCGA-L9-A7SV-01 17 9631346 9631346 G T USP43 Missense_Mutation p.R804L 0.24 deleterious(0.01) benign(0.119) TCGA-L9-A7SV-01 17 9820584 9820584 G T GAS7 Missense_Mutation p.H464Q 0.06 deleterious(0.03) benign(0.26) TCGA-L9-A7SV-01 18 14533188 14533188 G T POTEC Silent p.L309L 0.57 TCGA-L9-A7SV-01 18 22805253 22805253 C A ZNF521 Nonsense_Mutation p.E877* 0.22 TCGA-L9-A7SV-01 18 22806187 22806187 A G ZNF521 Silent p.C565C 0.41 TCGA-L9-A7SV-01 18 23724557 23724557 G T PSMA8 Missense_Mutation p.G46V 0.43 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 18 2847889 2847889 A T EMILIN2 Missense_Mutation p.N73Y 0.93 deleterious(0.05) probably_damaging(0.983) TCGA-L9-A7SV-01 18 28588045 28588045 C A DSC3 Missense_Mutation p.D534Y 0.24 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 18 28991326 28991326 G T DSG4 Missense_Mutation p.R776M 0.16 deleterious(0.01) probably_damaging(0.94) TCGA-L9-A7SV-01 18 29437747 29437747 T C TRAPPC8 Missense_Mutation p.K982E 0.22 deleterious(0.05) benign(0.097) TCGA-L9-A7SV-01 18 29867321 29867321 C A GAREM Missense_Mutation p.W413C 0.21 tolerated(0.05) probably_damaging(0.94) TCGA-L9-A7SV-01 18 29867506 29867506 C A GAREM Nonsense_Mutation p.E352* 0.26 TCGA-L9-A7SV-01 18 30093682 30093682 G T WBP11P1 RNA 0.45 TCGA-L9-A7SV-01 18 31323339 31323339 G T ASXL3 Missense_Mutation p.R1176L 0.23 probably_damaging(0.998) TCGA-L9-A7SV-01 18 31324349 31324349 C A ASXL3 Missense_Mutation p.P1513T 0.27 benign(0.219) TCGA-L9-A7SV-01 18 31324350 31324350 C A ASXL3 Missense_Mutation p.P1513H 0.29 possibly_damaging(0.717) TCGA-L9-A7SV-01 18 32374142 32374142 C A DTNA Missense_Mutation p.P97Q 0.31 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 18 32455224 32455224 C A DTNA Missense_Mutation p.R502S 0.39 tolerated(0.1) benign(0.222) TCGA-L9-A7SV-01 18 33724899 33724899 T A ELP2 Intron 0.22 TCGA-L9-A7SV-01 18 39570441 39570441 A T PIK3C3 Missense_Mutation p.N213Y 0.39 deleterious(0) possibly_damaging(0.784) TCGA-L9-A7SV-01 18 40695526 40695526 C T RIT2 5'UTR 0.17 TCGA-L9-A7SV-01 18 42531969 42531969 C T SETBP1 Silent p.S888S 0.12 TCGA-L9-A7SV-01 18 43247832 43247832 C A SLC14A2 Silent p.V584V 0.23 TCGA-L9-A7SV-01 18 48593394 48593394 A T SMAD4 Missense_Mutation p.H382L 0.20 deleterious(0.03) probably_damaging(1) TCGA-L9-A7SV-01 18 50683781 50683781 G T DCC Missense_Mutation p.L439F 0.18 deleterious(0) probably_damaging(0.946) TCGA-L9-A7SV-01 18 54398816 54398816 G T WDR7 Missense_Mutation p.E659D 0.44 tolerated(0.72) benign(0.001) TCGA-L9-A7SV-01 18 56205283 56205283 G A ALPK2 Silent p.P712P 0.51 TCGA-L9-A7SV-01 18 56247685 56247685 G T ALPK2 Nonsense_Mutation p.S108* 0.44 TCGA-L9-A7SV-01 18 56414648 56414648 C G MALT1 Silent p.V683V 0.06 TCGA-L9-A7SV-01 18 57133999 57133999 G A CCBE1 Silent p.T175T 0.21 TCGA-L9-A7SV-01 18 580652 580652 G T CETN1 Missense_Mutation p.G82W 0.56 deleterious(0) probably_damaging(0.997) TCGA-L9-A7SV-01 18 59166488 59166488 G C CDH20 Missense_Mutation p.V106L 0.47 tolerated(0.2) benign(0.178) TCGA-L9-A7SV-01 18 63547941 63547941 T A CDH7 Silent p.G723G 0.23 TCGA-L9-A7SV-01 18 65181830 65181830 T A DSEL Missense_Mutation p.T16S 0.15 deleterious_low_confidence(0.05) possibly_damaging(0.801) TCGA-L9-A7SV-01 18 67781803 67781803 C A RTTN Silent p.L1187L 0.20 TCGA-L9-A7SV-01 18 67991886 67991886 G T SOCS6 5'UTR 0.19 TCGA-L9-A7SV-01 18 7012066 7012066 C A LAMA1 Silent p.L1145L 0.86 TCGA-L9-A7SV-01 18 7013868 7013868 G A LAMA1 Silent p.N1103N 0.45 TCGA-L9-A7SV-01 18 72343287 72343287 G T ZNF407 Silent p.G104G 0.18 TCGA-L9-A7SV-01 18 72632684 72632684 A T ZNF407 Intron 0.40 TCGA-L9-A7SV-01 18 74622758 74622758 G T ZNF236 Silent p.G930G 0.20 TCGA-L9-A7SV-01 18 756778 756778 C A YES1 Missense_Mutation p.R17I 0.36 tolerated(0.12) benign(0.045) TCGA-L9-A7SV-01 18 76753506 76753506 C A SALL3 Silent p.P505P 0.28 TCGA-L9-A7SV-01 18 76967003 76967003 G T ATP9B Missense_Mutation p.V341F 0.38 deleterious(0.01) probably_damaging(0.972) TCGA-L9-A7SV-01 18 9254778 9254778 G T ANKRD12 Missense_Mutation p.V505L 0.74 tolerated_low_confidence(0.23) benign(0.003) TCGA-L9-A7SV-01 19 10084597 10084597 C A COL5A3 Nonsense_Mutation p.E1186* 0.73 TCGA-L9-A7SV-01 19 12090647 12090647 A G ZNF763 3'UTR 0.30 TCGA-L9-A7SV-01 19 1257318 1257318 G A MIDN 3'UTR 0.45 TCGA-L9-A7SV-01 19 12981742 12981742 C A MAST1 Silent p.V1036V 0.75 TCGA-L9-A7SV-01 19 13470474 13470474 C T CACNA1A Silent p.V308V 0.75 TCGA-L9-A7SV-01 19 16974496 16974496 G A SIN3B Silent p.L456L 0.40 TCGA-L9-A7SV-01 19 17088285 17088285 G A CPAMD8 Missense_Mutation p.P598S 0.91 tolerated(0.58) benign(0.013) TCGA-L9-A7SV-01 19 17750652 17750652 G T UNC13A Nonsense_Mutation p.Y951* 0.90 TCGA-L9-A7SV-01 19 1784942 1784942 G A ATP8B3 Missense_Mutation p.A1179V 0.71 tolerated(0.47) benign(0.104) TCGA-L9-A7SV-01 19 19141870 19141870 C A SUGP2 Missense_Mutation p.R4I 0.36 deleterious(0) probably_damaging(0.991) TCGA-L9-A7SV-01 19 22156711 22156711 G T ZNF208 Silent p.G375G 0.35 TCGA-L9-A7SV-01 19 23543793 23543793 C A ZNF91 Missense_Mutation p.C663F 0.31 deleterious(0) probably_damaging(0.995) TCGA-L9-A7SV-01 19 24010427 24010427 G T RPSAP58 Missense_Mutation p.R155L 0.47 deleterious(0.03) benign(0.029) TCGA-L9-A7SV-01 19 2438389 2438389 C A LMNB2 Missense_Mutation p.R181L 0.69 deleterious(0.01) benign(0.022) TCGA-L9-A7SV-01 19 2877548 2877548 A T ZNF556 Missense_Mutation p.S198C 0.82 tolerated(0.07) probably_damaging(0.99) TCGA-L9-A7SV-01 19 30934605 30934605 G T ZNF536 Missense_Mutation p.A46S 0.19 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-L9-A7SV-01 19 31040070 31040070 G T ZNF536 Missense_Mutation p.D1182Y 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.855) TCGA-L9-A7SV-01 19 34263647 34263647 G T CHST8 Silent p.V318V 0.52 TCGA-L9-A7SV-01 19 35251390 35251390 C A ZNF599 Nonsense_Mutation p.E106* 0.29 TCGA-L9-A7SV-01 19 35251391 35251391 C A ZNF599 Missense_Mutation p.Q105H 0.28 tolerated(0.14) benign(0.004) TCGA-L9-A7SV-01 19 35657216 35657216 A G FXYD5 Missense_Mutation p.I159V 0.24 tolerated(1) benign(0.01) TCGA-L9-A7SV-01 19 35775992 35775992 G A HAMP 3'UTR 0.35 TCGA-L9-A7SV-01 19 35786657 35786657 G T MAG Missense_Mutation p.S63I 0.24 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 19 35800818 35800818 C G MAG Missense_Mutation p.R425G 0.21 tolerated(0.09) benign(0.037) TCGA-L9-A7SV-01 19 35849879 35862348 19:35849879-35862348 - FFAR3 large deletion 0.28 TCGA-L9-A7SV-01 19 36340149 36340149 G T NPHS1 Missense_Mutation p.Q277K 0.12 deleterious(0.03) possibly_damaging(0.899) TCGA-L9-A7SV-01 19 38572624 38572624 G T SIPA1L3 Missense_Mutation p.R140L 0.33 tolerated(0.18) probably_damaging(0.954) TCGA-L9-A7SV-01 19 38954469 38954469 A T RYR1 Missense_Mutation p.Q922L 0.60 benign(0.348) TCGA-L9-A7SV-01 19 38976258 38976258 C T RYR1 Missense_Mutation p.R1655C 0.51 benign(0.047) TCGA-L9-A7SV-01 19 39078458 39078458 C T MAP4K1 Splice_Site p.X832_splice 0.21 TCGA-L9-A7SV-01 19 39575898 39575898 C G PAPL 5'UTR 0.21 TCGA-L9-A7SV-01 19 39798456 39798456 C T LRFN1 Silent p.G711G 0.58 TCGA-L9-A7SV-01 19 39924262 39924262 T A RPS16 Intron 0.52 TCGA-L9-A7SV-01 19 41497363 41497363 A T CYP2B6 Silent p.L51L 0.23 TCGA-L9-A7SV-01 19 41518200 41518200 C A CYP2B6 Intron 0.26 TCGA-L9-A7SV-01 19 4157247 4157247 G T CREB3L3 Missense_Mutation p.G138W 0.80 deleterious(0) possibly_damaging(0.72) TCGA-L9-A7SV-01 19 4168353 4168353 G A CREB3L3 Silent p.E240E 0.77 TCGA-L9-A7SV-01 19 42091799 42091799 C A CEACAM21 Silent p.A267A 0.42 TCGA-L9-A7SV-01 19 42133324 42133324 G T CEACAM4 Missense_Mutation p.P3H 0.21 tolerated(0.07) benign(0.334) TCGA-L9-A7SV-01 19 42311283 42311283 G T CEACAM3 Intron 0.26 TCGA-L9-A7SV-01 19 42473734 42473734 T A ATP1A3 Splice_Site p.X861_splice 0.30 TCGA-L9-A7SV-01 19 42584512 42584512 G T ZNF574 Missense_Mutation p.G585V 0.29 deleterious(0) probably_damaging(0.972) TCGA-L9-A7SV-01 19 42793440 42793440 G A CIC Silent p.G414G 0.37 TCGA-L9-A7SV-01 19 4310480 4310480 T C FSD1 Missense_Mutation p.M126T 0.86 deleterious(0.01) benign(0.116) TCGA-L9-A7SV-01 19 43382158 43382158 T G PSG1 Missense_Mutation p.T113P 0.56 deleterious(0) probably_damaging(0.992) TCGA-L9-A7SV-01 19 43990952 43990952 C G PHLDB3 Silent p.L440L 0.59 TCGA-L9-A7SV-01 19 44590660 44590660 C T ZNF284 Silent p.Y343Y 0.45 TCGA-L9-A7SV-01 19 45448528 45448528 C T APOC4 Missense_Mutation p.P117L 0.55 deleterious(0) probably_damaging(0.998) TCGA-L9-A7SV-01 19 45476404 45476404 G T CLPTM1 Missense_Mutation p.Q82H 0.62 tolerated(0.1) possibly_damaging(0.796) TCGA-L9-A7SV-01 19 45655240 45655240 A T NKPD1 Missense_Mutation p.C819S 0.17 tolerated_low_confidence(0.72) benign(0.005) TCGA-L9-A7SV-01 19 46280645 46280645 G A DMPK Silent p.T372T 0.49 TCGA-L9-A7SV-01 19 47127074 47127074 G T PTGIR Missense_Mutation p.R137S 0.21 tolerated(0.27) possibly_damaging(0.635) TCGA-L9-A7SV-01 19 48523034 48523034 T A ELSPBP1 Missense_Mutation p.N138K 0.19 tolerated(1) benign(0.005) TCGA-L9-A7SV-01 19 49391429 49391429 C A TULP2 Silent p.L242L 0.34 TCGA-L9-A7SV-01 19 49526178 49526178 G T CGB Missense_Mutation p.P155T 0.56 tolerated_low_confidence(0.08) benign(0.05) TCGA-L9-A7SV-01 19 49526179 49526179 G T CGB Silent p.L154L 0.56 TCGA-L9-A7SV-01 19 49540075 49540075 C A CTB-60B18.6 5'UTR 0.43 TCGA-L9-A7SV-01 19 50550060 50550060 G A ZNF473 Missense_Mutation p.R787K 0.30 tolerated(0.88) benign(0.003) TCGA-L9-A7SV-01 19 50951570 50951570 G T MYBPC2 Missense_Mutation p.E465D 0.24 tolerated(0.08) benign(0.06) TCGA-L9-A7SV-01 19 51136054 51136054 G T SYT3 Missense_Mutation p.L55M 0.54 deleterious(0) probably_damaging(0.997) TCGA-L9-A7SV-01 19 51470521 51470521 G T KLK6 Missense_Mutation p.P34H 0.55 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 19 51856395 51856395 C A ETFB Silent p.L213L 0.30 TCGA-L9-A7SV-01 19 52658936 52658936 T C ZNF836 Missense_Mutation p.K667R 0.57 tolerated(0.05) probably_damaging(0.976) TCGA-L9-A7SV-01 19 52941845 52941845 G T ZNF534 Nonsense_Mutation p.G391* 0.55 TCGA-L9-A7SV-01 19 53391459 53391459 C T ZNF320 Silent p.E21E 0.16 TCGA-L9-A7SV-01 19 53770711 53770711 C A VN1R4 Missense_Mutation p.G70W 0.62 deleterious(0) probably_damaging(0.994) TCGA-L9-A7SV-01 19 53856660 53856660 G C ZNF845 Missense_Mutation p.G911A 0.22 deleterious(0.03) benign(0.064) TCGA-L9-A7SV-01 19 53911832 53911832 C G ZNF765 Missense_Mutation p.L342V 0.25 deleterious(0) possibly_damaging(0.83) TCGA-L9-A7SV-01 19 54754563 54754563 C A LILRB5 3'UTR 0.44 TCGA-L9-A7SV-01 19 54760526 54760526 C T LILRB5 Missense_Mutation p.D61N 0.58 tolerated(0.3) benign(0.16) TCGA-L9-A7SV-01 19 54782199 54782199 C A LILRB2 Silent p.A391A 0.21 TCGA-L9-A7SV-01 19 54802086 54802086 G C LILRA3 Missense_Mutation p.R368G 0.25 deleterious(0.03) possibly_damaging(0.797) TCGA-L9-A7SV-01 19 54803141 54803141 C A LILRA3 Missense_Mutation p.R179L 0.33 deleterious(0.03) benign(0.004) TCGA-L9-A7SV-01 19 54818588 54818588 G T LILRA5 3'UTR 0.39 TCGA-L9-A7SV-01 19 54822758 54822758 C A LILRA5 Missense_Mutation p.R213I 0.56 deleterious(0.01) probably_damaging(0.996) TCGA-L9-A7SV-01 19 55014134 55014134 C A LAIR2 5'UTR 0.58 TCGA-L9-A7SV-01 19 55044260 55044260 A T KIR3DX1 Splice_Site p.X12_splice 0.24 TCGA-L9-A7SV-01 19 55143547 55143547 G T LILRB1 Missense_Mutation p.A174S 0.28 tolerated(0.32) benign(0.002) TCGA-L9-A7SV-01 19 55329801 55329801 G T KIR3DL1 Missense_Mutation p.W34C 0.76 deleterious(0) possibly_damaging(0.887) TCGA-L9-A7SV-01 19 55350961 55350961 G C KIR2DS4 Missense_Mutation p.S150T 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.712) TCGA-L9-A7SV-01 19 55401161 55401161 C A FCAR Missense_Mutation p.P266T 0.46 tolerated(0.93) benign(0.002) TCGA-L9-A7SV-01 19 55417563 55417563 T C NCR1 Silent p.P6P 0.21 TCGA-L9-A7SV-01 19 55451494 55451494 C A NLRP7 Missense_Mutation p.W231C 0.49 tolerated(0.36) benign(0.004) TCGA-L9-A7SV-01 19 55816206 55816206 G T BRSK1 Silent p.G545G 0.82 TCGA-L9-A7SV-01 19 56047543 56047543 C T SBK2 Missense_Mutation p.R40H 0.13 tolerated(0.12) unknown(0) TCGA-L9-A7SV-01 19 56423525 56423525 G T NLRP13 Missense_Mutation p.P553H 0.61 tolerated(0.05) possibly_damaging(0.473) TCGA-L9-A7SV-01 19 56473520 56473520 G A NLRP8 Missense_Mutation p.M710I 0.59 deleterious(0.04) benign(0.002) TCGA-L9-A7SV-01 19 56538694 56538694 T A NLRP5 Missense_Mutation p.D365E 0.64 tolerated(0.24) possibly_damaging(0.507) TCGA-L9-A7SV-01 19 56561834 56561834 C A NLRP5 Missense_Mutation p.A1003E 0.31 deleterious(0.01) possibly_damaging(0.775) TCGA-L9-A7SV-01 19 56953357 56953357 C A ZNF667 Missense_Mutation p.G336V 0.55 deleterious(0) benign(0.229) TCGA-L9-A7SV-01 19 57176326 57176326 G T ZNF835 Silent p.R81R 0.67 TCGA-L9-A7SV-01 19 57286768 57286768 C G ZIM2 Missense_Mutation p.S291T 0.24 tolerated(0.23) benign(0.258) TCGA-L9-A7SV-01 19 57335018 57335018 C A PEG3 Missense_Mutation p.D142Y 0.52 deleterious(0.01) possibly_damaging(0.706) TCGA-L9-A7SV-01 19 57862925 57862925 G T ZNF304 5'UTR 0.41 TCGA-L9-A7SV-01 19 58455329 58455329 C G ZNF256 Missense_Mutation p.E45Q 0.53 deleterious(0.01) probably_damaging(0.961) TCGA-L9-A7SV-01 19 58864216 58864216 G A A1BG Intron 0.33 TCGA-L9-A7SV-01 19 6686770 6686770 C A C3 Silent p.L1211L 0.83 TCGA-L9-A7SV-01 19 6702507 6702507 C A C3 Missense_Mutation p.D777Y 0.92 deleterious(0.03) benign(0.375) TCGA-L9-A7SV-01 19 6828895 6828895 C A VAV1 Missense_Mutation p.R417S 0.29 tolerated(0.11) possibly_damaging(0.584) TCGA-L9-A7SV-01 19 6937653 6937653 C A EMR1 Silent p.S883S 0.80 TCGA-L9-A7SV-01 19 7618766 7618766 G T PNPLA6 Missense_Mutation p.G766W 0.37 deleterious(0.03) possibly_damaging(0.818) TCGA-L9-A7SV-01 19 9046903 9046903 C A MUC16 Silent p.T11576T 0.55 TCGA-L9-A7SV-01 19 9056511 9056511 G T MUC16 Missense_Mutation p.P10312H 0.77 benign(0.027) TCGA-L9-A7SV-01 19 9059348 9059348 G T MUC16 Silent p.A9366A 0.40 TCGA-L9-A7SV-01 19 9064748 9064748 C - MUC16 Frame_Shift_Del p.S7567Pfs*35 0.33 TCGA-L9-A7SV-01 19 9082951 9082951 G T MUC16 Nonsense_Mutation p.S2955* 0.81 TCGA-L9-A7SV-01 19 9090084 9090084 T C MUC16 Silent p.T577T 0.86 TCGA-L9-A7SV-01 19 9677550 9677550 C A ZNF121 Missense_Mutation p.R80I 0.36 deleterious(0.01) possibly_damaging(0.553) TCGA-L9-A7SV-01 1 102270027 102270028 - A OLFM3 Frame_Shift_Ins p.G382Wfs*27 0.22 TCGA-L9-A7SV-01 1 103354315 103354315 C A COL11A1 Splice_Site p.X1507_splice 0.28 TCGA-L9-A7SV-01 1 103385913 103385913 T C COL11A1 Missense_Mutation p.Q1239R 0.23 unknown(0) TCGA-L9-A7SV-01 1 103468348 103468348 C A COL11A1 Splice_Site p.X667_splice 0.27 TCGA-L9-A7SV-01 1 103484400 103484400 C T COL11A1 Missense_Mutation p.G442R 0.46 probably_damaging(1) TCGA-L9-A7SV-01 1 103548361 103548361 C G COL11A1 Missense_Mutation p.G92R 0.18 probably_damaging(0.979) TCGA-L9-A7SV-01 1 10386320 10386320 G A KIF1B Missense_Mutation p.A897T 0.50 tolerated(1) benign(0) TCGA-L9-A7SV-01 1 10523246 10523246 C A DFFA Nonsense_Mutation p.E218* 0.09 TCGA-L9-A7SV-01 1 107866939 107866939 G C NTNG1 Silent p.A94A 0.32 TCGA-L9-A7SV-01 1 110031485 110031485 A T ATXN7L2 Missense_Mutation p.Q267L 0.56 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 1 111146421 111146421 C A KCNA2 Missense_Mutation p.L328F 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-L9-A7SV-01 1 113459736 113459736 C T SLC16A1 Intron 0.44 TCGA-L9-A7SV-01 1 115238127 115238127 T C AMPD1 Missense_Mutation p.Y22C 0.16 tolerated_low_confidence(0.13) benign(0) TCGA-L9-A7SV-01 1 115260736 115260736 C A CSDE1 3'UTR 0.48 TCGA-L9-A7SV-01 1 11575543 11575543 T A PTCHD2 Missense_Mutation p.F524Y 0.30 deleterious(0) probably_damaging(0.998) TCGA-L9-A7SV-01 1 117695730 117695730 C A VTCN1 Missense_Mutation p.G236V 0.12 deleterious(0.04) possibly_damaging(0.688) TCGA-L9-A7SV-01 1 118644400 118644400 C A SPAG17 Missense_Mutation p.K199N 0.41 deleterious(0) possibly_damaging(0.725) TCGA-L9-A7SV-01 1 119427516 119427516 C A TBX15 Missense_Mutation p.G444W 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-L9-A7SV-01 1 119584948 119584948 C A WARS2 Missense_Mutation p.D152Y 0.51 deleterious(0.01) benign(0.351) TCGA-L9-A7SV-01 1 120168552 120168552 C A ZNF697 Missense_Mutation p.G58C 0.12 tolerated_low_confidence(0.07) benign(0.372) TCGA-L9-A7SV-01 1 12020778 12020778 G T PLOD1 Missense_Mutation p.G351C 0.56 deleterious(0) possibly_damaging(0.894) TCGA-L9-A7SV-01 1 12726108 12726108 G C AADACL4 Missense_Mutation p.G196R 0.10 deleterious(0) probably_damaging(0.995) TCGA-L9-A7SV-01 1 12785277 12785277 T C AADACL3 Missense_Mutation p.Y123H 0.46 deleterious(0.03) benign(0.086) TCGA-L9-A7SV-01 1 12837668 12837668 G A PRAMEF12 Missense_Mutation p.G460S 0.51 deleterious(0.05) probably_damaging(0.915) TCGA-L9-A7SV-01 1 12887676 12887676 G T PRAMEF11 Missense_Mutation p.Q61K 0.48 tolerated(0.12) benign(0.132) TCGA-L9-A7SV-01 1 144994930 144994930 G T PDE4DIP 5'UTR 0.23 TCGA-L9-A7SV-01 1 145474710 145474710 C A ANKRD34A Missense_Mutation p.S461Y 0.67 deleterious(0.01) possibly_damaging(0.675) TCGA-L9-A7SV-01 1 149783916 149783916 A C HIST2H2BF 5'UTR 0.06 TCGA-L9-A7SV-01 1 152081260 152081260 A T TCHH Missense_Mutation p.L1478Q 0.16 unknown(0) TCGA-L9-A7SV-01 1 152278802 152278802 A T FLG Missense_Mutation p.S2854T 0.03 benign(0.286) TCGA-L9-A7SV-01 1 152282751 152282751 G C FLG Silent p.P1537P 0.67 TCGA-L9-A7SV-01 1 152282752 152282752 G T FLG Missense_Mutation p.P1537H 0.67 possibly_damaging(0.893) TCGA-L9-A7SV-01 1 152538282 152538282 C A LCE3E 3'UTR 0.19 TCGA-L9-A7SV-01 1 152595361 152595361 A G LCE3A Silent p.G73G 0.13 TCGA-L9-A7SV-01 1 152733487 152733487 C A KPRP Silent p.R475R 0.18 TCGA-L9-A7SV-01 1 152800123 152800123 G T LCE1A Missense_Mutation p.G59C 0.75 tolerated_low_confidence(0.19) unknown(0) TCGA-L9-A7SV-01 1 153430306 153430306 C A S100A7 Silent p.A94A 0.84 TCGA-L9-A7SV-01 1 153614864 153614864 G A CHTOP Missense_Mutation p.R121H 0.79 tolerated(0.57) unknown(0) TCGA-L9-A7SV-01 1 153660217 153660217 C A NPR1 Missense_Mutation p.L734M 0.13 tolerated(0.06) probably_damaging(1) TCGA-L9-A7SV-01 1 153727151 153727151 G A INTS3 Missense_Mutation p.R298Q 0.06 deleterious(0) possibly_damaging(0.677) TCGA-L9-A7SV-01 1 155106546 155106546 G A EFNA1 3'UTR 0.12 TCGA-L9-A7SV-01 1 155209426 155209426 T A GBA Missense_Mutation p.K145N 0.28 deleterious(0.05) benign(0.064) TCGA-L9-A7SV-01 1 155254416 155254416 T C HCN3 Silent p.P319P 0.18 TCGA-L9-A7SV-01 1 155884138 155884138 C A KIAA0907 Intron 0.21 TCGA-L9-A7SV-01 1 156376737 156376737 G T C1orf61 Intron 0.21 TCGA-L9-A7SV-01 1 156556350 156556350 C T TTC24 3'UTR 0.16 TCGA-L9-A7SV-01 1 157737391 157737391 C A FCRL2 Intron 0.11 TCGA-L9-A7SV-01 1 157789881 157789881 C T FCRL1 5'UTR 0.72 TCGA-L9-A7SV-01 1 158227566 158227566 C A CD1A 3'UTR 0.08 TCGA-L9-A7SV-01 1 158435834 158435834 C A OR10K1 Silent p.S161S 0.06 TCGA-L9-A7SV-01 1 158609377 158609377 G T SPTA1 Silent p.R1659R 0.79 TCGA-L9-A7SV-01 1 158654943 158654943 G T SPTA1 Silent p.V73V 0.14 TCGA-L9-A7SV-01 1 158686963 158686963 C A OR6K3 Missense_Mutation p.G315C 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.628) TCGA-L9-A7SV-01 1 158736374 158736374 G T OR6N1 Silent p.L33L 0.09 TCGA-L9-A7SV-01 1 158911925 158911925 G C PYHIN1 Missense_Mutation p.Q246H 0.09 tolerated(0.05) possibly_damaging(0.69) TCGA-L9-A7SV-01 1 159035710 159035710 A G AIM2 Missense_Mutation p.V269A 0.05 tolerated(0.39) benign(0.371) TCGA-L9-A7SV-01 1 159175632 159175632 G A DARC Missense_Mutation p.V137I 0.27 tolerated(0.21) benign(0.126) TCGA-L9-A7SV-01 1 159803053 159803053 A C SLAMF8 Silent p.A225A 0.11 TCGA-L9-A7SV-01 1 159825840 159825840 G T VSIG8 Silent p.I268I 0.18 TCGA-L9-A7SV-01 1 159922077 159922077 G T SLAMF9 Silent p.P213P 0.18 TCGA-L9-A7SV-01 1 160011947 160011947 G T KCNJ10 Missense_Mutation p.Q126K 0.60 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 1 160275292 160275292 C A COPA Missense_Mutation p.G542V 0.17 deleterious(0) possibly_damaging(0.899) TCGA-L9-A7SV-01 1 161141686 161141686 C T B4GALT3 Missense_Mutation p.E368K 0.12 deleterious_low_confidence(0.04) benign(0.045) TCGA-L9-A7SV-01 1 161519598 161519598 A G FCGR3A Missense_Mutation p.S13P 0.64 tolerated_low_confidence(0.12) possibly_damaging(0.6) TCGA-L9-A7SV-01 1 161561031 161561031 C G FCGR2C 5'Flank 0.09 TCGA-L9-A7SV-01 1 161681214 161681214 C T FCRLA Missense_Mutation p.P173L 0.82 deleterious(0.04) possibly_damaging(0.452) TCGA-L9-A7SV-01 1 161681216 161681216 G T FCRLA Missense_Mutation p.G174C 0.83 tolerated(0.07) probably_damaging(1) TCGA-L9-A7SV-01 1 162335209 162335209 G C RP11-565P22.6 Missense_Mutation p.D5H 0.73 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 1 166039667 166039667 C G FAM78B Silent p.V199V 0.03 TCGA-L9-A7SV-01 1 166826943 166826943 A G TADA1 Missense_Mutation p.V290A 0.25 tolerated(0.11) benign(0.006) TCGA-L9-A7SV-01 1 167059572 167059572 C A GPA33 5'UTR 0.43 TCGA-L9-A7SV-01 1 167400979 167400979 A T CD247 Missense_Mutation p.L145H 0.19 deleterious(0) probably_damaging(0.997) TCGA-L9-A7SV-01 1 167666552 167666552 C A RCSD1 Missense_Mutation p.L231M 0.68 tolerated(0.22) benign(0.389) TCGA-L9-A7SV-01 1 167830256 167830256 G T ADCY10 Missense_Mutation p.F554L 0.58 deleterious(0) benign(0.077) TCGA-L9-A7SV-01 1 168054683 168054683 G T GPR161 3'UTR 0.21 TCGA-L9-A7SV-01 1 168511296 168511296 G T XCL2 Silent p.T37T 0.59 TCGA-L9-A7SV-01 1 169953798 169953798 G T KIFAP3 Silent p.R440R 0.36 TCGA-L9-A7SV-01 1 171621517 171621517 T A MYOC Missense_Mutation p.S79C 0.18 deleterious(0.02) possibly_damaging(0.789) TCGA-L9-A7SV-01 1 171890902 171890902 G T DNM3 Missense_Mutation p.R59L 0.17 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 1 172389949 172389949 C G C1orf105 5'UTR 0.35 TCGA-L9-A7SV-01 1 172411499 172411499 A T PIGC Silent p.T88T 0.12 TCGA-L9-A7SV-01 1 17257090 17257091 - T CROCC Splice_Site p.X283_splice 0.28 TCGA-L9-A7SV-01 1 172634905 172634905 G A FASLG Missense_Mutation p.G199S 0.14 tolerated(0.12) benign(0.256) TCGA-L9-A7SV-01 1 173836855 173836855 C T ZBTB37 5'Flank 0.71 TCGA-L9-A7SV-01 1 175335185 175335185 G T TNR Missense_Mutation p.H715N 0.21 tolerated(0.08) probably_damaging(0.988) TCGA-L9-A7SV-01 1 175372488 175372488 G T TNR Missense_Mutation p.P255H 0.51 deleterious(0.01) benign(0.264) TCGA-L9-A7SV-01 1 17552349 17552349 T A PADI1 Missense_Mutation p.L151Q 0.14 deleterious(0) probably_damaging(0.949) TCGA-L9-A7SV-01 1 176563727 176563727 G A PAPPA2 Silent p.K329K 0.78 TCGA-L9-A7SV-01 1 176668352 176668352 C A PAPPA2 Missense_Mutation p.L955M 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-L9-A7SV-01 1 18149602 18149602 G A ACTL8 Silent p.V33V 0.33 TCGA-L9-A7SV-01 1 181767623 181767623 G T CACNA1E Missense_Mutation p.A2199S 0.74 tolerated(0.1) benign(0.018) TCGA-L9-A7SV-01 1 181767904 181767904 G T CACNA1E Silent p.G2292G 0.17 TCGA-L9-A7SV-01 1 182368850 182368850 C A TEDDM1 Missense_Mutation p.E257D 0.29 tolerated(0.1) benign(0.027) TCGA-L9-A7SV-01 1 182847264 182847264 G T DHX9 Silent p.R769R 0.67 TCGA-L9-A7SV-01 1 183196754 183196754 T A LAMC2 Missense_Mutation p.C464S 0.17 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 1 183891426 183891426 C G RGL1 Missense_Mutation p.P727R 0.58 tolerated(0.88) benign(0.039) TCGA-L9-A7SV-01 1 184663428 184663428 T A EDEM3 Silent p.A856A 0.74 TCGA-L9-A7SV-01 1 184787880 184787880 C A FAM129A Missense_Mutation p.M355I 0.22 deleterious(0) probably_damaging(0.947) TCGA-L9-A7SV-01 1 186034394 186034394 G T HMCN1 Missense_Mutation p.W2513L 0.15 probably_damaging(0.996) TCGA-L9-A7SV-01 1 186646019 186646041 AGTTTCACCGTAAATATGATTTA - PTGS2 Frame_Shift_Del p.L216Sfs*3 0.16 TCGA-L9-A7SV-01 1 192153741 192153741 C A RGS18 3'UTR 0.33 TCGA-L9-A7SV-01 1 19501515 19501515 T A UBR4 Missense_Mutation p.H929L 0.24 benign(0) TCGA-L9-A7SV-01 1 196311295 196311295 G T KCNT2 Silent p.V489V 0.72 TCGA-L9-A7SV-01 1 196458987 196458987 G C KCNT2 Missense_Mutation p.P86A 0.13 deleterious(0.04) benign(0.083) TCGA-L9-A7SV-01 1 196977672 196977672 G A CFHR5 Nonsense_Mutation p.W523* 0.69 TCGA-L9-A7SV-01 1 197313441 197313441 G A CRB1 Missense_Mutation p.C228Y 0.25 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 1 200017391 200017391 C A NR5A2 Silent p.L185L 0.26 TCGA-L9-A7SV-01 1 200972894 200972894 G T KIF21B Silent p.I344I 0.13 TCGA-L9-A7SV-01 1 202544245 202544245 C T PPP1R12B Intron 0.66 TCGA-L9-A7SV-01 1 202544246 202544246 G C PPP1R12B Intron 0.65 TCGA-L9-A7SV-01 1 203316688 203316688 C G FMOD Missense_Mutation p.K237N 0.26 deleterious(0) possibly_damaging(0.857) TCGA-L9-A7SV-01 1 206649676 206649676 G T IKBKE Missense_Mutation p.V171F 0.16 deleterious(0) possibly_damaging(0.852) TCGA-L9-A7SV-01 1 206905407 206905407 G T MAPKAPK2 Intron 0.50 TCGA-L9-A7SV-01 1 207782973 207782973 C A CR1 Missense_Mutation p.H2079N 0.32 tolerated(0.62) benign(0.01) TCGA-L9-A7SV-01 1 209956353 209956353 C A C1orf74 Missense_Mutation p.W209C 0.44 tolerated(0.43) probably_damaging(0.994) TCGA-L9-A7SV-01 1 210014388 210014388 G T DIEXF Missense_Mutation p.W491C 0.09 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 1 21036160 21036160 G T KIF17 Missense_Mutation p.F214L 0.14 deleterious(0.01) probably_damaging(0.955) TCGA-L9-A7SV-01 1 21050177 21050177 G T SH2D5 Missense_Mutation p.L284M 0.70 deleterious(0.01) possibly_damaging(0.872) TCGA-L9-A7SV-01 1 210856846 210856846 G T KCNH1 Missense_Mutation p.P916H 0.49 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-L9-A7SV-01 1 211093222 211093222 C A KCNH1 Nonsense_Mutation p.E408* 0.70 TCGA-L9-A7SV-01 1 211487173 211487173 C G RCOR3 3'UTR 0.27 TCGA-L9-A7SV-01 1 212798307 212798307 C T FAM71A Nonsense_Mutation p.R30* 0.09 TCGA-L9-A7SV-01 1 213174128 213174128 C T ANGEL2 Missense_Mutation p.D421N 0.15 tolerated(0.25) benign(0.134) TCGA-L9-A7SV-01 1 215179262 215179262 C A KCNK2 5'UTR 0.13 TCGA-L9-A7SV-01 1 215368387 215368387 C A KCNK2 Missense_Mutation p.S305R 0.66 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 1 215747159 215747159 G T KCTD3 Missense_Mutation p.W38C 0.11 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 1 215848765 215848765 A T USH2A Missense_Mutation p.V4163D 0.20 possibly_damaging(0.723) TCGA-L9-A7SV-01 1 216019278 216019278 A C USH2A Silent p.S2981S 0.24 TCGA-L9-A7SV-01 1 216219839 216219839 G T USH2A Missense_Mutation p.Q2087K 0.70 benign(0.064) TCGA-L9-A7SV-01 1 216405463 216405463 G T USH2A Missense_Mutation p.P942Q 0.19 possibly_damaging(0.516) TCGA-L9-A7SV-01 1 218610754 218610754 G T TGFB2 Missense_Mutation p.W362C 0.14 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 1 220826639 220826639 A T MARK1 Nonsense_Mutation p.R645* 0.74 TCGA-L9-A7SV-01 1 220870126 220870126 G A C1orf115 3'UTR 0.30 TCGA-L9-A7SV-01 1 22172735 22172735 C A HSPG2 Missense_Mutation p.R2777L 0.45 benign(0.015) TCGA-L9-A7SV-01 1 22178284 22178284 G A HSPG2 Missense_Mutation p.P2336S 0.23 benign(0.006) TCGA-L9-A7SV-01 1 222715433 222715433 C G HHIPL2 Missense_Mutation p.D347H 0.26 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 1 224804929 224804929 C T CNIH3 Missense_Mutation p.A18V 0.21 tolerated(0.07) benign(0.02) TCGA-L9-A7SV-01 1 226128696 226128696 C A LEFTY2 Nonsense_Mutation p.E49* 0.24 TCGA-L9-A7SV-01 1 227198703 227198703 A C CDC42BPA Intron 0.31 TCGA-L9-A7SV-01 1 227843182 227843182 G T ZNF678 Missense_Mutation p.G411W 0.20 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 1 228005024 228005024 G T PRSS38 Missense_Mutation p.E142D 0.11 tolerated(0.06) possibly_damaging(0.534) TCGA-L9-A7SV-01 1 228452088 228452088 G T OBSCN Silent p.V1803V 0.67 TCGA-L9-A7SV-01 1 229625824 229625824 C A NUP133 Missense_Mutation p.A358S 0.15 deleterious(0.01) probably_damaging(0.983) TCGA-L9-A7SV-01 1 230492952 230492952 G C PGBD5 Missense_Mutation p.F80L 0.74 tolerated(0.25) benign(0.257) TCGA-L9-A7SV-01 1 231376904 231376904 C T C1orf131 5'UTR 0.53 TCGA-L9-A7SV-01 1 235715260 235715260 G T GNG4 3'UTR 0.35 TCGA-L9-A7SV-01 1 236371487 236371487 C A GPR137B 3'UTR 0.17 TCGA-L9-A7SV-01 1 236647158 236647158 G T EDARADD 3'Flank 0.18 TCGA-L9-A7SV-01 1 236647391 236647391 C A EDARADD 3'Flank 0.44 TCGA-L9-A7SV-01 1 236759190 236759190 C A HEATR1 Missense_Mutation p.G300V 0.20 deleterious(0) probably_damaging(0.997) TCGA-L9-A7SV-01 1 236920788 236920788 C A ACTN2 Missense_Mutation p.H719Q 0.15 tolerated(0.06) possibly_damaging(0.856) TCGA-L9-A7SV-01 1 236973870 236973870 G T MTR Silent p.V159V 0.67 TCGA-L9-A7SV-01 1 237586401 237586401 A T RYR2 Silent p.G286G 0.18 TCGA-L9-A7SV-01 1 237586510 237586510 G A RYR2 Missense_Mutation p.D323N 0.29 benign(0.026) TCGA-L9-A7SV-01 1 237586533 237586533 C A RYR2 Silent p.T330T 0.29 TCGA-L9-A7SV-01 1 237868546 237868546 C A RYR2 Silent p.A3161A 0.25 TCGA-L9-A7SV-01 1 237895352 237895352 G T RYR2 Missense_Mutation p.G3648W 0.18 possibly_damaging(0.71) TCGA-L9-A7SV-01 1 237982485 237982485 A T RYR2 Silent p.I4861I 0.40 TCGA-L9-A7SV-01 1 238051675 238051675 C A ZP4 Missense_Mutation p.C179F 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-L9-A7SV-01 1 238051772 238051772 G T ZP4 Missense_Mutation p.P147T 0.12 tolerated(0.3) benign(0.196) TCGA-L9-A7SV-01 1 240497426 240497426 G A FMN2 Silent p.Q1554Q 0.16 TCGA-L9-A7SV-01 1 241767593 241767594 - A OPN3 Frame_Shift_Ins p.C221Lfs*30 0.47 TCGA-L9-A7SV-01 1 244756846 244756846 G T C1orf101 Missense_Mutation p.D757Y 0.08 tolerated(0.14) benign(0.046) TCGA-L9-A7SV-01 1 247615227 247615227 C G OR2B11 Missense_Mutation p.G20R 0.10 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 1 247654952 247654952 G T OR2W5 RNA 0.22 TCGA-L9-A7SV-01 1 247655011 247655011 G T OR2W5 RNA 0.47 TCGA-L9-A7SV-01 1 247695584 247695584 C A OR2C3 Missense_Mutation p.S77I 0.58 deleterious(0) probably_damaging(0.994) TCGA-L9-A7SV-01 1 247769736 247769736 C A OR2G3 Silent p.P283P 0.10 TCGA-L9-A7SV-01 1 247875786 247875786 G A OR6F1 Missense_Mutation p.T91I 0.18 deleterious(0.04) benign(0.012) TCGA-L9-A7SV-01 1 247902367 247902367 G A OR14K1 Missense_Mutation p.G151R 0.17 tolerated(0.35) probably_damaging(0.916) TCGA-L9-A7SV-01 1 248059119 248059119 C G OR2W3 Silent p.S77S 0.74 TCGA-L9-A7SV-01 1 248262961 248262961 G A OR2L13 Missense_Mutation p.G95E 0.22 deleterious(0.01) probably_damaging(0.931) TCGA-L9-A7SV-01 1 248366914 248366914 C T OR2M3 Missense_Mutation p.P182L 0.17 deleterious(0.05) possibly_damaging(0.864) TCGA-L9-A7SV-01 1 248367150 248367150 C A OR2M3 Silent p.R261R 0.17 TCGA-L9-A7SV-01 1 248458452 248458452 G T OR2T12 Silent p.T143T 0.50 TCGA-L9-A7SV-01 1 248512929 248512929 C G OR14C36 Missense_Mutation p.P285A 0.23 deleterious(0) probably_damaging(0.94) TCGA-L9-A7SV-01 1 248569804 248569804 A C OR2T1 Missense_Mutation p.Y170S 0.14 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 1 248685330 248685330 G T OR2G6 Missense_Mutation p.R128L 0.19 deleterious(0.01) benign(0.048) TCGA-L9-A7SV-01 1 248844763 248844763 G A OR14I1 Silent p.P281P 0.14 TCGA-L9-A7SV-01 1 26349797 26349797 C A EXTL1 Silent p.P220P 0.42 TCGA-L9-A7SV-01 1 27216406 27216406 C A GPN2 Missense_Mutation p.G61V 0.57 tolerated(0.07) benign(0.102) TCGA-L9-A7SV-01 1 2938609 2938609 G T ACTRT2 Missense_Mutation p.R120L 0.65 deleterious(0) probably_damaging(0.998) TCGA-L9-A7SV-01 1 33354587 33354587 T A HPCA Missense_Mutation p.W30R 0.32 deleterious(0.01) probably_damaging(1) TCGA-L9-A7SV-01 1 34090696 34090696 G T CSMD2 Missense_Mutation p.P1779T 0.48 deleterious(0) probably_damaging(0.984) TCGA-L9-A7SV-01 1 34330071 34330071 C A HMGB4 Silent p.P93P 0.11 TCGA-L9-A7SV-01 1 3511931 3511931 T A MEGF6 Missense_Mutation p.Q116L 0.15 deleterious(0) possibly_damaging(0.58) TCGA-L9-A7SV-01 1 36226409 36226409 T G CLSPN Silent p.A371A 0.29 TCGA-L9-A7SV-01 1 36367128 36367128 G C AGO1 Missense_Mutation p.Q358H 0.53 deleterious(0) probably_damaging(0.998) TCGA-L9-A7SV-01 1 36820827 36820827 C A STK40 Missense_Mutation p.V184L 0.46 tolerated(0.07) possibly_damaging(0.796) TCGA-L9-A7SV-01 1 39798057 39798057 G T MACF1 Intron 0.09 TCGA-L9-A7SV-01 1 39826509 39826509 G T MACF1 Nonsense_Mutation p.E2035* 0.55 TCGA-L9-A7SV-01 1 39927573 39927573 T C MACF1 Missense_Mutation p.L5122S 0.56 probably_damaging(0.984) TCGA-L9-A7SV-01 1 40928197 40928197 A T ZFP69B Missense_Mutation p.S181C 0.47 tolerated(0.18) benign(0.01) TCGA-L9-A7SV-01 1 42880748 42880748 G T RIMKLA 3'UTR 0.25 TCGA-L9-A7SV-01 1 44461645 44461645 G T CCDC24 Missense_Mutation p.R246I 0.20 tolerated(0.07) benign(0.147) TCGA-L9-A7SV-01 1 45809306 45809306 A T TOE1 Nonsense_Mutation p.K489* 0.44 TCGA-L9-A7SV-01 1 47407033 47407033 G A CYP4A11 Missense_Mutation p.L25F 0.12 tolerated(0.5) benign(0.32) TCGA-L9-A7SV-01 1 52275987 52275987 C A NRD1 Missense_Mutation p.K691N 0.29 deleterious(0.04) benign(0.439) TCGA-L9-A7SV-01 1 52956474 52956474 C A ZCCHC11 Splice_Site p.X440_splice 0.38 TCGA-L9-A7SV-01 1 53164008 53164008 C A COA7 5'UTR 0.18 TCGA-L9-A7SV-01 1 55319266 55319266 C A DHCR24 Missense_Mutation p.C413F 0.36 deleterious(0.01) probably_damaging(0.992) TCGA-L9-A7SV-01 1 57383440 57383440 C A C8A 3'UTR 0.78 TCGA-L9-A7SV-01 1 58992941 58992941 C A OMA1 Missense_Mutation p.A403S 0.34 deleterious(0) probably_damaging(0.986) TCGA-L9-A7SV-01 1 58996335 58996335 C A OMA1 Missense_Mutation p.A360S 0.15 deleterious(0) probably_damaging(0.966) TCGA-L9-A7SV-01 1 6214887 6214887 C A CHD5 Missense_Mutation p.R193L 0.46 deleterious(0) probably_damaging(0.988) TCGA-L9-A7SV-01 1 63999869 63999869 G T EFCAB7 Missense_Mutation p.M262I 0.45 tolerated(0.53) benign(0) TCGA-L9-A7SV-01 1 65656501 65656501 G T AK4 Missense_Mutation p.W85L 0.30 deleterious(0.02) probably_damaging(0.944) TCGA-L9-A7SV-01 1 6680123 6680123 G T PHF13 Silent p.G134G 0.52 TCGA-L9-A7SV-01 1 67299789 67299789 C A WDR78 Missense_Mutation p.Q592H 0.28 deleterious(0.02) possibly_damaging(0.885) TCGA-L9-A7SV-01 1 68905287 68905287 G T RPE65 Missense_Mutation p.Q228K 0.15 tolerated(0.06) probably_damaging(0.995) TCGA-L9-A7SV-01 1 70503933 70503933 G T LRRC7 Missense_Mutation p.G771V 0.09 tolerated_low_confidence(0.08) benign(0.221) TCGA-L9-A7SV-01 1 70710427 70710427 C T SRSF11 Silent p.S287S 0.17 TCGA-L9-A7SV-01 1 74507163 74507163 T A LRRIQ3 Silent p.R484R 0.23 TCGA-L9-A7SV-01 1 76190374 76190374 G C ACADM 5'Flank 0.54 TCGA-L9-A7SV-01 1 76388009 76388009 C A ASB17 Missense_Mutation p.S146I 0.43 deleterious(0.03) benign(0.029) TCGA-L9-A7SV-01 1 77806143 77806143 C A AK5 Missense_Mutation p.Q261K 0.47 tolerated(0.06) probably_damaging(0.973) TCGA-L9-A7SV-01 1 78324707 78324707 G T FAM73A Missense_Mutation p.V361F 0.32 deleterious(0.04) probably_damaging(0.912) TCGA-L9-A7SV-01 1 79002461 79002461 C G PTGFR 3'UTR 0.29 TCGA-L9-A7SV-01 1 7907687 7907687 G T UTS2 3'Flank 0.15 TCGA-L9-A7SV-01 1 79093913 79093913 C - IFI44L Frame_Shift_Del p.P105Qfs*28 0.27 TCGA-L9-A7SV-01 1 79106710 79106710 A T IFI44L Silent p.I351I 0.55 TCGA-L9-A7SV-01 1 79107563 79107563 A G IFI44L 3'UTR 0.22 TCGA-L9-A7SV-01 1 79411966 79411966 G C ELTD1 Silent p.V106V 0.24 TCGA-L9-A7SV-01 1 8075326 8075326 C G ERRFI1 Intron 0.23 TCGA-L9-A7SV-01 1 82402452 82402452 G T LPHN2 Missense_Mutation p.D110Y 0.24 deleterious(0) probably_damaging(0.997) TCGA-L9-A7SV-01 1 82409160 82409160 G T LPHN2 Missense_Mutation p.W302L 0.34 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 1 82456772 82456772 G T LPHN2 Silent p.G1385G 0.52 TCGA-L9-A7SV-01 1 8425928 8425928 G A RERE Missense_Mutation p.T464I 0.14 probably_damaging(0.99) TCGA-L9-A7SV-01 1 84383358 84383358 C A TTLL7 Missense_Mutation p.D506Y 0.33 deleterious(0) probably_damaging(0.985) TCGA-L9-A7SV-01 1 84415628 84415628 C T TTLL7 Missense_Mutation p.D67N 0.63 tolerated(0.1) benign(0.156) TCGA-L9-A7SV-01 1 85121612 85121612 C A SSX2IP Missense_Mutation p.R431L 0.19 deleterious(0) possibly_damaging(0.82) TCGA-L9-A7SV-01 1 85331113 85331113 G T LPAR3 Silent p.R231R 0.22 TCGA-L9-A7SV-01 1 86524821 86524821 C A COL24A1 Missense_Mutation p.G597C 0.09 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 1 89520553 89520553 G A GBP1 Missense_Mutation p.R493C 0.15 tolerated(0.07) benign(0.015) TCGA-L9-A7SV-01 1 92613327 92613327 T G BTBD8 Missense_Mutation p.M369R 0.52 tolerated(0.06) possibly_damaging(0.899) TCGA-L9-A7SV-01 1 95710166 95710166 G T RWDD3 Missense_Mutation p.W162L 0.21 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 1 982776 982776 A T AGRN Missense_Mutation p.E1153V 0.13 deleterious(0) probably_damaging(0.961) TCGA-L9-A7SV-01 20 10603457 10603457 G T SLX4IP Missense_Mutation p.M219I 0.53 tolerated(0.33) benign(0.005) TCGA-L9-A7SV-01 20 11904128 11904128 C A BTBD3 Silent p.I461I 0.23 TCGA-L9-A7SV-01 20 18295824 18295824 G T ZNF133 Missense_Mutation p.C109F 0.19 deleterious(0.04) possibly_damaging(0.784) TCGA-L9-A7SV-01 20 20258023 20258023 G T C20orf26 Missense_Mutation p.W906L 0.26 tolerated(0.06) probably_damaging(0.996) TCGA-L9-A7SV-01 20 21494251 21494251 C A NKX2-2 Silent p.P19P 0.22 TCGA-L9-A7SV-01 20 21689209 21689209 G C PAX1 Silent p.G310G 0.27 TCGA-L9-A7SV-01 20 23017256 23017256 G A SSTR4 Missense_Mutation p.R379H 0.26 tolerated_low_confidence(0.34) benign(0) TCGA-L9-A7SV-01 20 23856845 23856845 A T CST5 Missense_Mutation p.Y137N 0.58 tolerated(0.36) benign(0.005) TCGA-L9-A7SV-01 20 24524090 24524090 G T SYNDIG1 Silent p.R119R 0.32 TCGA-L9-A7SV-01 20 25472135 25472135 C A NINL Missense_Mutation p.R446M 0.36 deleterious(0) possibly_damaging(0.776) TCGA-L9-A7SV-01 20 26084154 26084154 G C NCOR1P1 RNA 0.21 TCGA-L9-A7SV-01 20 31606481 31606481 C A BPIFB2 Silent p.P236P 0.44 TCGA-L9-A7SV-01 20 3240632 3240632 C A C20orf194 Missense_Mutation p.M972I 0.20 tolerated(0.15) possibly_damaging(0.648) TCGA-L9-A7SV-01 20 33297210 33297210 C A TP53INP2 Missense_Mutation p.L99I 0.14 deleterious(0) probably_damaging(0.998) TCGA-L9-A7SV-01 20 33442348 33442348 C T GGT7 Missense_Mutation p.M435I 0.14 tolerated(0.23) benign(0.012) TCGA-L9-A7SV-01 20 33874923 33874923 G T FAM83C Missense_Mutation p.S553R 0.40 deleterious_low_confidence(0.01) benign(0.398) TCGA-L9-A7SV-01 20 33875320 33875320 G T FAM83C Missense_Mutation p.P421Q 0.09 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-L9-A7SV-01 20 33891700 33891700 C A UQCC1 3'UTR 0.09 TCGA-L9-A7SV-01 20 34487348 34487348 G C PHF20 Missense_Mutation p.D447H 0.66 deleterious(0.02) probably_damaging(0.975) TCGA-L9-A7SV-01 20 35075311 35075311 G T DLGAP4 Missense_Mutation p.G540V 0.14 tolerated(0.19) benign(0.131) TCGA-L9-A7SV-01 20 35293457 35293457 C A NDRG3 Nonsense_Mutation p.E268* 0.66 TCGA-L9-A7SV-01 20 35731114 35731114 C A MROH8 Missense_Mutation p.K1062N 0.30 tolerated_low_confidence(0.09) benign(0.052) TCGA-L9-A7SV-01 20 35827526 35827526 A G RPN2 Missense_Mutation p.Y126C 0.68 deleterious(0.02) probably_damaging(0.928) TCGA-L9-A7SV-01 20 36869143 36869143 G T KIAA1755 Missense_Mutation p.P464T 0.64 tolerated(0.2) benign(0.004) TCGA-L9-A7SV-01 20 37356749 37356749 G T SLC32A1 Missense_Mutation p.V349L 0.35 tolerated(0.29) benign(0.023) TCGA-L9-A7SV-01 20 3778396 3778396 G T CDC25B Missense_Mutation p.G110C 0.27 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 20 42965888 42965888 C A R3HDML Missense_Mutation p.P31T 0.13 tolerated(0.56) benign(0.019) TCGA-L9-A7SV-01 20 43139946 43139946 C T SERINC3 Silent p.G153G 0.19 TCGA-L9-A7SV-01 20 43836175 43836175 C A SEMG1 Silent p.S79S 0.50 TCGA-L9-A7SV-01 20 44404082 44404082 C A WFDC3 Missense_Mutation p.W218L 0.27 tolerated_low_confidence(0.6) benign(0.003) TCGA-L9-A7SV-01 20 44505372 44505372 G T ZSWIM3 Missense_Mutation p.V59F 0.25 deleterious(0.04) probably_damaging(0.998) TCGA-L9-A7SV-01 20 44670146 44670146 G C SLC12A5 Missense_Mutation p.G368R 0.47 deleterious(0) probably_damaging(0.98) TCGA-L9-A7SV-01 20 44869839 44869839 C A CDH22 Missense_Mutation p.G105C 0.26 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 20 46266436 46266436 G T NCOA3 Silent p.L807L 0.11 TCGA-L9-A7SV-01 20 47267490 47267490 C A PREX1 Missense_Mutation p.R920L 0.33 tolerated(0.06) benign(0.003) TCGA-L9-A7SV-01 20 4764824 4764824 C G RASSF2 3'UTR 0.40 TCGA-L9-A7SV-01 20 4764863 4764863 G T RASSF2 3'UTR 0.30 TCGA-L9-A7SV-01 20 48140703 48140703 C A PTGIS Silent p.R249R 0.21 TCGA-L9-A7SV-01 20 50235292 50235292 C A ATP9A Silent p.P753P 0.20 TCGA-L9-A7SV-01 20 51871462 51871462 C - TSHZ2 Frame_Shift_Del p.Q489Kfs*4 0.10 TCGA-L9-A7SV-01 20 52835702 52835702 A T PFDN4 3'UTR 0.12 TCGA-L9-A7SV-01 20 5294713 5294713 C A PROKR2 Silent p.L101L 0.38 TCGA-L9-A7SV-01 20 55093201 55093201 G T RTFDC1 Missense_Mutation p.R267S 0.55 tolerated(0.13) probably_damaging(0.985) TCGA-L9-A7SV-01 20 55206885 55206885 C A TFAP2C Missense_Mutation p.L187M 0.26 tolerated(0.34) benign(0.425) TCGA-L9-A7SV-01 20 56094304 56094304 C T CTCFL Missense_Mutation p.R295H 0.18 deleterious(0) possibly_damaging(0.905) TCGA-L9-A7SV-01 20 56138640 56138640 C A PCK1 Missense_Mutation p.P273H 0.26 deleterious(0) probably_damaging(0.998) TCGA-L9-A7SV-01 20 56185311 56185311 G T ZBP1 Silent p.L329L 0.12 TCGA-L9-A7SV-01 20 57767332 57767332 G T ZNF831 Missense_Mutation p.D420Y 0.19 deleterious(0) probably_damaging(0.95) TCGA-L9-A7SV-01 20 57769697 57769697 C A ZNF831 Missense_Mutation p.A1208E 0.15 deleterious(0.01) possibly_damaging(0.84) TCGA-L9-A7SV-01 20 58448981 58448981 G T SYCP2 Missense_Mutation p.P1162H 0.43 deleterious(0.01) probably_damaging(0.926) TCGA-L9-A7SV-01 20 5903606 5903606 T C CHGB Silent p.S272S 0.21 TCGA-L9-A7SV-01 20 5903607 5903607 G T CHGB Nonsense_Mutation p.E273* 0.21 TCGA-L9-A7SV-01 20 60887366 60887366 G A LAMA5 Missense_Mutation p.R3123C 0.14 benign(0.086) TCGA-L9-A7SV-01 20 6100114 6100114 T A FERMT1 Missense_Mutation p.T30S 0.29 tolerated(0.15) benign(0.011) TCGA-L9-A7SV-01 20 61303116 61303116 C G SLCO4A1 Silent p.L680L 0.25 TCGA-L9-A7SV-01 20 61512498 61512498 C A DIDO1 Missense_Mutation p.A1604S 0.17 benign(0.004) TCGA-L9-A7SV-01 20 61574442 61574442 A T GID8 Silent p.I74I 0.35 TCGA-L9-A7SV-01 20 61939959 61939959 G T COL20A1 Missense_Mutation p.A281S 0.44 tolerated(0.19) benign(0.14) TCGA-L9-A7SV-01 20 62364587 62364587 G T ZGPAT Missense_Mutation p.V201L 0.13 tolerated(0.1) benign(0.106) TCGA-L9-A7SV-01 20 62714761 62714761 G C C20orf201 Missense_Mutation p.P234A 0.12 tolerated_low_confidence(0.33) benign(0) TCGA-L9-A7SV-01 20 62737222 62737222 G A NPBWR2 Silent p.D321D 0.16 TCGA-L9-A7SV-01 20 9364957 9364957 C A PLCB4 Missense_Mutation p.H321Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 20 9510435 9510435 C A LAMP5 Silent p.R271R 0.21 TCGA-L9-A7SV-01 20 9561440 9561440 G A PAK7 Silent p.S114S 0.18 TCGA-L9-A7SV-01 21 10862654 10862654 G T IGHV1OR21-1 Silent p.V11V 0.15 TCGA-L9-A7SV-01 21 10906893 10906893 G T TPTE 3'UTR 0.19 TCGA-L9-A7SV-01 21 27945228 27945228 C T CYYR1 Missense_Mutation p.G11E 0.26 tolerated_low_confidence(0.12) probably_damaging(0.982) TCGA-L9-A7SV-01 21 28212276 28212276 G T ADAMTS1 Silent p.V590V 0.38 TCGA-L9-A7SV-01 21 28214933 28214933 G T ADAMTS1 Missense_Mutation p.Q268K 0.36 tolerated(0.15) benign(0.314) TCGA-L9-A7SV-01 21 28315748 28315748 C T ADAMTS5 Nonsense_Mutation p.W452* 0.33 TCGA-L9-A7SV-01 21 31588002 31588002 C T CLDN8 Missense_Mutation p.R81K 0.33 deleterious(0) probably_damaging(0.997) TCGA-L9-A7SV-01 21 31655008 31655008 G A KRTAP24-1 Silent p.C81C 0.30 TCGA-L9-A7SV-01 21 31797946 31797946 C A KRTAP13-3 Missense_Mutation p.M95I 0.55 tolerated(0.08) benign(0.001) TCGA-L9-A7SV-01 21 31797950 31797950 G C KRTAP13-3 Missense_Mutation p.T94S 0.34 tolerated(0.27) benign(0.199) TCGA-L9-A7SV-01 21 31852539 31852539 C A KRTAP19-1 Missense_Mutation p.C33F 0.26 tolerated_low_confidence(0.65) unknown(0) TCGA-L9-A7SV-01 21 31852540 31852540 A G KRTAP19-1 Missense_Mutation p.C33R 0.25 tolerated_low_confidence(0.89) unknown(0) TCGA-L9-A7SV-01 21 31986141 31986141 C A KRTAP6-1 Missense_Mutation p.G28V 0.26 unknown(0) TCGA-L9-A7SV-01 21 32253499 32253499 T A KRTAP11-1 Silent p.G115G 0.62 TCGA-L9-A7SV-01 21 32496866 32496866 C G TIAM1 Missense_Mutation p.G1427A 0.22 deleterious(0.04) benign(0.298) TCGA-L9-A7SV-01 21 32526611 32526611 C A TIAM1 Missense_Mutation p.R1042L 0.21 deleterious(0) probably_damaging(0.925) TCGA-L9-A7SV-01 21 34056419 34056419 C G SYNJ1 Missense_Mutation p.G416R 0.23 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 21 34727818 34727818 G T IFNAR1 Missense_Mutation p.S546I 0.27 tolerated(0.05) benign(0.184) TCGA-L9-A7SV-01 21 37442687 37442687 G T CBR1 Missense_Mutation p.G92C 0.57 deleterious(0) probably_damaging(0.994) TCGA-L9-A7SV-01 21 38558007 38558007 G C TTC3 Missense_Mutation p.M1586I 0.24 tolerated(0.54) benign(0.002) TCGA-L9-A7SV-01 21 41385184 41385184 C T DSCAM Missense_Mutation p.R1939H 0.60 deleterious_low_confidence(0.02) benign(0.39) TCGA-L9-A7SV-01 21 41684220 41684220 C G DSCAM Missense_Mutation p.C617S 0.58 deleterious(0.02) possibly_damaging(0.759) TCGA-L9-A7SV-01 21 42080451 42080451 T A DSCAM Missense_Mutation p.D97V 0.60 deleterious(0.02) probably_damaging(0.999) TCGA-L9-A7SV-01 21 43771059 43771059 C A TFF2 Missense_Mutation p.R3L 0.33 tolerated(0.68) benign(0) TCGA-L9-A7SV-01 21 43800229 43800229 C A TMPRSS3 Nonsense_Mutation p.G349* 0.27 TCGA-L9-A7SV-01 21 44270341 44270341 C A WDR4 Missense_Mutation p.A353S 0.25 tolerated(0.44) benign(0.012) TCGA-L9-A7SV-01 21 45798997 45798997 C A TRPM2 Missense_Mutation p.L378M 0.29 deleterious(0.01) probably_damaging(0.928) TCGA-L9-A7SV-01 21 45860765 45860765 G T TRPM2 Missense_Mutation p.V1455L 0.21 tolerated(0.26) benign(0.006) TCGA-L9-A7SV-01 21 47423614 47423614 G T COL6A1 Missense_Mutation p.R925L 0.34 tolerated(0.09) possibly_damaging(0.556) TCGA-L9-A7SV-01 21 47570096 47570096 C A FTCD Silent p.A281A 0.24 TCGA-L9-A7SV-01 21 47648483 47648483 C A LSS Missense_Mutation p.K15N 0.35 deleterious(0.03) benign(0.441) TCGA-L9-A7SV-01 21 47737200 47737200 C A C21orf58 Intron 0.20 TCGA-L9-A7SV-01 21 47953466 47953466 G T DIP2A Silent p.L445L 0.29 TCGA-L9-A7SV-01 22 17443620 17443620 G T GAB4 3'UTR 0.85 TCGA-L9-A7SV-01 22 21340139 21340139 G C LZTR1 Missense_Mutation p.M91I 0.82 tolerated(0.05) probably_damaging(0.999) TCGA-L9-A7SV-01 22 23165344 23165344 C G IGLV2-8 Silent p.L10L 0.83 TCGA-L9-A7SV-01 22 23256461 23256461 G T IGLJ5 Silent p.G18G 0.49 TCGA-L9-A7SV-01 22 25771910 25771910 T A LRP5L 5'UTR 0.33 TCGA-L9-A7SV-01 22 26861507 26861507 C G HPS4 Missense_Mutation p.L239F 0.87 tolerated(0.11) benign(0.315) TCGA-L9-A7SV-01 22 29913331 29913331 C A THOC5 Missense_Mutation p.S505I 0.56 tolerated(0.15) benign(0.003) TCGA-L9-A7SV-01 22 30738254 30738254 T A SF3A1 Missense_Mutation p.Y271F 0.31 tolerated(0.13) probably_damaging(0.973) TCGA-L9-A7SV-01 22 31946320 31946320 G C SFI1 Missense_Mutation p.R177T 0.81 tolerated(0.12) possibly_damaging(0.571) TCGA-L9-A7SV-01 22 36334910 36334910 T A RBFOX2 Silent p.P74P 0.60 TCGA-L9-A7SV-01 22 36537076 36537076 T A APOL3 3'UTR 0.82 TCGA-L9-A7SV-01 22 37209745 37209745 G T PVALB Silent p.T83T 0.83 TCGA-L9-A7SV-01 22 37261003 37261003 C A NCF4 Missense_Mutation p.L54I 0.90 tolerated(0.09) probably_damaging(0.921) TCGA-L9-A7SV-01 22 37464718 37464718 A T TMPRSS6 Intron 0.83 TCGA-L9-A7SV-01 22 37485702 37485702 C A TMPRSS6 Missense_Mutation p.R260L 0.27 deleterious(0.02) benign(0.314) TCGA-L9-A7SV-01 22 37499308 37499308 C A TMPRSS6 Silent p.L59L 0.43 TCGA-L9-A7SV-01 22 37769343 37769343 C A ELFN2 Silent p.S744S 0.61 TCGA-L9-A7SV-01 22 40415325 40415325 G T FAM83F Missense_Mutation p.D215Y 0.85 deleterious(0.01) possibly_damaging(0.863) TCGA-L9-A7SV-01 22 42607278 42607278 C T TCF20 Missense_Mutation p.R1345Q 0.82 probably_damaging(0.997) TCGA-L9-A7SV-01 22 46594393 46594393 C T PPARA Missense_Mutation p.S38L 0.89 deleterious_low_confidence(0) benign(0.356) TCGA-L9-A7SV-01 22 50277613 50277613 C G ZBED4 Silent p.A101A 0.37 TCGA-L9-A7SV-01 22 50279414 50279414 A T ZBED4 Missense_Mutation p.R702W 0.87 deleterious(0.01) probably_damaging(0.938) TCGA-L9-A7SV-01 22 51160635 51160635 C T SHANK3 Silent p.A1474A 0.67 TCGA-L9-A7SV-01 2 100623686 100623686 G T AFF3 Silent p.P162P 0.21 TCGA-L9-A7SV-01 2 102965565 102965565 G T IL1RL1 Missense_Mutation p.V382F 0.27 deleterious(0) benign(0.305) TCGA-L9-A7SV-01 2 105472206 105472206 G T POU3F3 Missense_Mutation p.G80W 0.35 deleterious_low_confidence(0) benign(0.245) TCGA-L9-A7SV-01 2 105889415 105889415 C A TGFBRAP1 Missense_Mutation p.Q623H 0.26 tolerated(0.25) benign(0.009) TCGA-L9-A7SV-01 2 105896992 105896992 C A TGFBRAP1 Missense_Mutation p.S437I 0.21 deleterious(0.01) possibly_damaging(0.661) TCGA-L9-A7SV-01 2 107459972 107459972 C A ST6GAL2 Silent p.G154G 0.32 TCGA-L9-A7SV-01 2 107459973 107459973 C A ST6GAL2 Missense_Mutation p.G154V 0.32 benign(0.1) TCGA-L9-A7SV-01 2 108476253 108476253 C A RGPD4 Silent p.G570G 0.23 TCGA-L9-A7SV-01 2 108479461 108479461 G - RGPD4 Frame_Shift_Del p.M814Ifs*6 0.15 TCGA-L9-A7SV-01 2 108998285 108998285 G T SULT1C4 Silent p.R79R 0.34 TCGA-L9-A7SV-01 2 109398838 109398838 G T RANBP2 Missense_Mutation p.W3005C 0.17 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 2 109398839 109398839 A T RANBP2 Missense_Mutation p.T3006S 0.17 tolerated(0.16) probably_damaging(0.999) TCGA-L9-A7SV-01 2 113308538 113308538 C G POLR1B Missense_Mutation p.R241G 0.13 deleterious(0) benign(0.015) TCGA-L9-A7SV-01 2 113308549 113308549 G T POLR1B Silent p.L244L 0.10 TCGA-L9-A7SV-01 2 113588949 113588949 G T IL1B Missense_Mutation p.P173T 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-L9-A7SV-01 2 120194722 120194722 C G TMEM37 Missense_Mutation p.S93R 0.21 deleterious(0.04) possibly_damaging(0.887) TCGA-L9-A7SV-01 2 121728011 121728011 C A GLI2 Nonsense_Mutation p.Y296* 0.48 TCGA-L9-A7SV-01 2 125405486 125405486 G T CNTNAP5 Missense_Mutation p.E675D 0.23 deleterious(0) possibly_damaging(0.744) TCGA-L9-A7SV-01 2 128186197 128186197 G A PROC Missense_Mutation p.R354K 0.52 tolerated(0.47) benign(0.018) TCGA-L9-A7SV-01 2 128342367 128342367 C T MYO7B Silent p.T523T 0.20 TCGA-L9-A7SV-01 2 128384885 128384885 G T MYO7B Missense_Mutation p.R1461M 0.15 deleterious(0) possibly_damaging(0.695) TCGA-L9-A7SV-01 2 128388369 128388369 C A MYO7B Nonsense_Mutation p.S1582* 0.20 TCGA-L9-A7SV-01 2 130897804 130897804 C A CCDC74B Missense_Mutation p.C275F 0.45 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 2 131487481 131487481 G C GPR148 Missense_Mutation p.G253R 0.25 tolerated(0.56) benign(0.014) TCGA-L9-A7SV-01 2 131521006 131521006 G T AMER3 Missense_Mutation p.G454V 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-L9-A7SV-01 2 131521329 131521329 G C AMER3 Missense_Mutation p.A562P 0.40 tolerated(0.06) benign(0.048) TCGA-L9-A7SV-01 2 131521336 131521336 G T AMER3 Missense_Mutation p.S564I 0.44 deleterious(0.01) possibly_damaging(0.671) TCGA-L9-A7SV-01 2 131829451 131829451 C A FAM168B Missense_Mutation p.G44V 0.50 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-L9-A7SV-01 2 131897824 131897824 G T PLEKHB2 Missense_Mutation p.V178L 0.44 tolerated(0.09) benign(0.037) TCGA-L9-A7SV-01 2 132021660 132021660 C A POTEE Missense_Mutation p.L878I 0.18 tolerated_low_confidence(0.09) possibly_damaging(0.662) TCGA-L9-A7SV-01 2 133403722 133403722 C G LYPD1 Missense_Mutation p.G108R 0.23 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 2 136393497 136393497 A T R3HDM1 Nonsense_Mutation p.K246* 0.28 TCGA-L9-A7SV-01 2 136566473 136566473 C A LCT Missense_Mutation p.Q1148H 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-L9-A7SV-01 2 136575454 136575454 C A LCT Missense_Mutation p.W388C 0.28 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 2 136594420 136594420 T A LCT Missense_Mutation p.E107V 0.73 deleterious(0.03) benign(0.281) TCGA-L9-A7SV-01 2 141113987 141113987 A T LRP1B Nonsense_Mutation p.C3818* 0.24 TCGA-L9-A7SV-01 2 141214172 141214172 A T LRP1B Missense_Mutation p.V3272D 0.33 possibly_damaging(0.485) TCGA-L9-A7SV-01 2 141819673 141819673 C A LRP1B Nonsense_Mutation p.G395* 0.27 TCGA-L9-A7SV-01 2 1457595 1457595 G T TPO Silent p.P204P 0.50 TCGA-L9-A7SV-01 2 14774235 14774235 G C FAM84A Silent p.L44L 0.37 TCGA-L9-A7SV-01 2 1500384 1500384 C G TPO Missense_Mutation p.P745A 0.59 tolerated(0.05) possibly_damaging(0.899) TCGA-L9-A7SV-01 2 152490460 152490460 T A NEB Missense_Mutation p.Y3041F 0.23 probably_damaging(0.995) TCGA-L9-A7SV-01 2 152553211 152553211 G T NEB Silent p.T503T 0.25 TCGA-L9-A7SV-01 2 157185913 157185913 C A NR4A2 Silent p.L262L 0.25 TCGA-L9-A7SV-01 2 158177917 158177917 G T ERMN Missense_Mutation p.Q254K 0.29 tolerated(0.08) possibly_damaging(0.574) TCGA-L9-A7SV-01 2 158182066 158182066 C A ERMN Missense_Mutation p.S43I 0.58 tolerated(0.37) benign(0.016) TCGA-L9-A7SV-01 2 159170378 159170378 A T CCDC148 Missense_Mutation p.W265R 0.34 deleterious(0.04) probably_damaging(0.934) TCGA-L9-A7SV-01 2 159481927 159481927 G T PKP4 Missense_Mutation p.D381Y 0.44 deleterious(0.01) probably_damaging(0.977) TCGA-L9-A7SV-01 2 160335086 160335086 C A BAZ2B Nonsense_Mutation p.G49* 0.50 TCGA-L9-A7SV-01 2 160994585 160994585 C A ITGB6 Silent p.V411V 0.33 TCGA-L9-A7SV-01 2 162813564 162813564 G T SLC4A10 Missense_Mutation p.M869I 0.75 deleterious(0) probably_damaging(0.985) TCGA-L9-A7SV-01 2 165542457 165542457 T G COBLL1 Nonstop_Mutation p.*1167Sext*19 0.31 TCGA-L9-A7SV-01 2 166026975 166026975 A T SCN3A Silent p.P116P 0.38 TCGA-L9-A7SV-01 2 166032699 166032699 G T SCN3A Missense_Mutation p.P69H 0.33 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 2 166183469 166183469 C A SCN2A Silent p.A708A 0.35 TCGA-L9-A7SV-01 2 166221770 166221770 G T SCN2A Nonsense_Mutation p.E1173* 0.22 TCGA-L9-A7SV-01 2 166626778 166626778 C A GALNT3 Nonsense_Mutation p.E145* 0.60 TCGA-L9-A7SV-01 2 166847997 166847997 G A SCN1A Missense_Mutation p.L1930F 0.27 deleterious(0) possibly_damaging(0.697) TCGA-L9-A7SV-01 2 166868766 166868766 C A SCN1A Missense_Mutation p.Q1244H 0.39 deleterious(0) possibly_damaging(0.892) TCGA-L9-A7SV-01 2 166892830 166892830 C G SCN1A Missense_Mutation p.D1053H 0.29 tolerated(0.05) benign(0.016) TCGA-L9-A7SV-01 2 16740758 16740759 - A FAM49A Frame_Shift_Ins p.A271Sfs*42 0.46 TCGA-L9-A7SV-01 2 168101090 168101090 C A XIRP2 Missense_Mutation p.P1063H 0.26 probably_damaging(1) TCGA-L9-A7SV-01 2 168104387 168104387 G T XIRP2 Missense_Mutation p.S2162I 0.36 benign(0.025) TCGA-L9-A7SV-01 2 170042416 170042416 G T LRP2 Silent p.R3148R 0.22 TCGA-L9-A7SV-01 2 170062635 170062635 T A LRP2 Missense_Mutation p.Y2485F 0.35 benign(0.032) TCGA-L9-A7SV-01 2 170129455 170129455 C A LRP2 Missense_Mutation p.D700Y 0.22 probably_damaging(0.986) TCGA-L9-A7SV-01 2 170462570 170462570 C G PPIG Nonsense_Mutation p.S53* 0.21 TCGA-L9-A7SV-01 2 170493150 170493150 G T PPIG Missense_Mutation p.R461M 0.72 deleterious(0) unknown(0) TCGA-L9-A7SV-01 2 174230214 174230214 C A CDCA7 Nonsense_Mutation p.S310* 0.45 TCGA-L9-A7SV-01 2 17699542 17699542 C A RAD51AP2 Silent p.A47A 0.10 TCGA-L9-A7SV-01 2 17773480 17773480 G T VSNL1 Nonsense_Mutation p.E47* 0.16 TCGA-L9-A7SV-01 2 179528621 179528621 C A TTN Missense_Mutation p.A12125S 0.20 TCGA-L9-A7SV-01 2 179546436 179546436 C G TTN Missense_Mutation p.V11042L 0.22 TCGA-L9-A7SV-01 2 179578829 179578829 T A TTN Silent p.T8852T 0.19 TCGA-L9-A7SV-01 2 179579949 179579949 A T TTN Missense_Mutation p.L8655Q 0.26 TCGA-L9-A7SV-01 2 179584080 179584080 G T TTN Missense_Mutation p.P8013T 0.33 TCGA-L9-A7SV-01 2 179584402 179584402 G A TTN Silent p.F7939F 0.25 TCGA-L9-A7SV-01 2 179584955 179584955 G T TTN Nonsense_Mutation p.S7805* 0.23 TCGA-L9-A7SV-01 2 179605149 179605149 G T TTN Missense_Mutation p.H4271N 0.32 TCGA-L9-A7SV-01 2 179611762 179611762 C A TTN Intron 0.36 TCGA-L9-A7SV-01 2 179616722 179616722 G A TTN Intron 0.23 TCGA-L9-A7SV-01 2 183070741 183070741 G T PDE1A Missense_Mutation p.H292Q 0.24 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 2 185800924 185800924 G T ZNF804A Silent p.V267V 0.23 TCGA-L9-A7SV-01 2 185801033 185801033 G C ZNF804A Missense_Mutation p.D304H 0.33 deleterious(0.03) possibly_damaging(0.599) TCGA-L9-A7SV-01 2 185801034 185801034 A T ZNF804A Missense_Mutation p.D304V 0.32 deleterious(0) possibly_damaging(0.606) TCGA-L9-A7SV-01 2 186672665 186672665 A T FSIP2 Missense_Mutation p.K6300I 0.45 possibly_damaging(0.83) TCGA-L9-A7SV-01 2 187495542 187495542 G T ITGAV Missense_Mutation p.G181V 0.27 deleterious(0) possibly_damaging(0.886) TCGA-L9-A7SV-01 2 187618728 187618728 G T FAM171B Missense_Mutation p.A322S 0.31 deleterious(0) possibly_damaging(0.883) TCGA-L9-A7SV-01 2 189929738 189929738 C G COL5A2 Missense_Mutation p.G537R 0.29 probably_damaging(1) TCGA-L9-A7SV-01 2 190656599 190656599 G C PMS1 Missense_Mutation p.V22L 0.17 tolerated(0.08) benign(0.314) TCGA-L9-A7SV-01 2 191301924 191301924 G T MFSD6 Missense_Mutation p.R390L 0.31 deleterious(0.04) benign(0.257) TCGA-L9-A7SV-01 2 1915834 1915834 G T MYT1L Missense_Mutation p.T554K 0.67 deleterious(0) possibly_damaging(0.84) TCGA-L9-A7SV-01 2 1915839 1915839 G T MYT1L Silent p.G552G 0.20 TCGA-L9-A7SV-01 2 202002346 202002346 G T CFLAR Intron 0.36 TCGA-L9-A7SV-01 2 202195243 202195243 C A ALS2CR12 Nonsense_Mutation p.E209* 0.62 TCGA-L9-A7SV-01 2 206166217 206166217 G T PARD3B Missense_Mutation p.G746C 0.51 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 2 207041849 207041849 G T GPR1 Silent p.S41S 0.24 TCGA-L9-A7SV-01 2 207459463 207459463 G T ADAM23 Missense_Mutation p.G694V 0.28 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 2 207557985 207557985 C - DYTN Frame_Shift_Del p.R299Afs*17 0.39 TCGA-L9-A7SV-01 2 207564915 207564915 C G DYTN Missense_Mutation p.R170P 0.53 tolerated(0.23) probably_damaging(0.968) TCGA-L9-A7SV-01 2 209165712 209165712 G T PIKFYVE Nonsense_Mutation p.G368* 0.12 TCGA-L9-A7SV-01 2 211454872 211454872 A T CPS1 Missense_Mutation p.T258S 0.26 tolerated(0.7) benign(0.015) TCGA-L9-A7SV-01 2 21225463 21225463 T C APOB Silent p.S4277S 0.13 TCGA-L9-A7SV-01 2 21228560 21228560 G T APOB Missense_Mutation p.A3727D 0.15 benign(0.009) TCGA-L9-A7SV-01 2 21231402 21231402 C T APOB Missense_Mutation p.G2780R 0.68 benign(0.034) TCGA-L9-A7SV-01 2 21247912 21247912 G T APOB Missense_Mutation p.L777I 0.17 probably_damaging(0.998) TCGA-L9-A7SV-01 2 212488698 212488698 C A ERBB4 Missense_Mutation p.E717D 0.30 deleterious(0) probably_damaging(0.93) TCGA-L9-A7SV-01 2 215862492 215862492 A G ABCA12 Missense_Mutation p.M1074T 0.28 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 2 216248759 216248759 G A FN1 Silent p.S1626S 0.19 TCGA-L9-A7SV-01 2 217543705 217543705 G C IGFBP5 Silent p.S145S 0.29 TCGA-L9-A7SV-01 2 218713233 218713233 C G TNS1 Silent p.L544L 0.64 TCGA-L9-A7SV-01 2 219000489 219000489 G T CXCR2 Missense_Mutation p.R322L 0.27 deleterious(0) probably_damaging(0.993) TCGA-L9-A7SV-01 2 219247097 219247097 A T SLC11A1 Silent p.T2T 0.41 TCGA-L9-A7SV-01 2 219249000 219249000 C A SLC11A1 Missense_Mutation p.T62K 0.24 deleterious(0) possibly_damaging(0.496) TCGA-L9-A7SV-01 2 219538628 219538628 G T STK36 Missense_Mutation p.E84D 0.25 deleterious(0.01) benign(0.1) TCGA-L9-A7SV-01 2 219757806 219757806 G T WNT10A Missense_Mutation p.G356V 0.18 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 2 219875572 219875572 G T CCDC108 Silent p.A1368A 0.16 TCGA-L9-A7SV-01 2 220039551 220039552 - C CNPPD1 Frame_Shift_Ins p.V154Cfs*24 0.27 TCGA-L9-A7SV-01 2 220096697 220096697 A - ANKZF1 Frame_Shift_Del p.M66Wfs*35 0.12 TCGA-L9-A7SV-01 2 220405176 220405176 C A CHPF Silent p.R419R 0.65 TCGA-L9-A7SV-01 2 220439845 220439845 C T INHA Missense_Mutation p.S233L 0.54 deleterious(0) probably_damaging(0.971) TCGA-L9-A7SV-01 2 220494379 220494379 G T SLC4A3 Silent p.V191V 0.54 TCGA-L9-A7SV-01 2 220499313 220499313 T A SLC4A3 Missense_Mutation p.L605H 0.07 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 2 222307686 222307686 C A EPHA4 Missense_Mutation p.R646I 0.39 deleterious(0) possibly_damaging(0.905) TCGA-L9-A7SV-01 2 224862987 224862987 G T SERPINE2 Missense_Mutation p.A123D 0.15 deleterious(0) probably_damaging(0.987) TCGA-L9-A7SV-01 2 230231588 230231588 C A DNER Splice_Site p.X701_splice 0.16 TCGA-L9-A7SV-01 2 230231589 230231589 C A DNER Missense_Mutation p.R701M 0.18 deleterious(0) possibly_damaging(0.837) TCGA-L9-A7SV-01 2 231110636 231110636 A C SP140 Missense_Mutation p.L241F 0.46 tolerated(0.05) possibly_damaging(0.816) TCGA-L9-A7SV-01 2 231624800 231624800 G T CAB39 Missense_Mutation p.K28N 0.58 tolerated(0.22) benign(0.013) TCGA-L9-A7SV-01 2 234590890 234590890 C A UGT1A7 Silent p.R103R 0.26 TCGA-L9-A7SV-01 2 234602232 234602232 G C UGT1A6 Missense_Mutation p.R194S 0.30 deleterious(0.03) possibly_damaging(0.462) TCGA-L9-A7SV-01 2 234668951 234668951 G A UGT1A8 Intron 0.28 TCGA-L9-A7SV-01 2 237032575 237032575 G A AGAP1 Missense_Mutation p.V795I 0.42 tolerated(0.12) benign(0.136) TCGA-L9-A7SV-01 2 238277490 238277490 C A COL6A3 Missense_Mutation p.G1539V 0.30 probably_damaging(0.997) TCGA-L9-A7SV-01 2 238283646 238283646 C A COL6A3 Missense_Mutation p.V1030L 0.36 probably_damaging(0.963) TCGA-L9-A7SV-01 2 238285557 238285557 C T COL6A3 Silent p.K976K 0.30 TCGA-L9-A7SV-01 2 239234555 239234555 G T TRAF3IP1 Nonsense_Mutation p.E100* 0.55 TCGA-L9-A7SV-01 2 240921555 240921555 C T NDUFA10 Intron 0.21 TCGA-L9-A7SV-01 2 241622133 241622133 G A AQP12B Missense_Mutation p.A41V 0.18 tolerated(0.32) benign(0.009) TCGA-L9-A7SV-01 2 241682370 241682370 G T KIF1A Silent p.R1206R 0.36 TCGA-L9-A7SV-01 2 241826530 241826530 C A C2orf54 Missense_Mutation p.S434I 0.18 tolerated(0.05) benign(0.317) TCGA-L9-A7SV-01 2 25469574 25469574 G A DNMT3A Silent p.A398A 0.10 TCGA-L9-A7SV-01 2 27505599 27505599 G C TRIM54 5'UTR 0.10 TCGA-L9-A7SV-01 2 27535591 27535591 C A MPV17 Missense_Mutation p.G79C 0.13 deleterious(0) probably_damaging(0.929) TCGA-L9-A7SV-01 2 27600892 27600892 G A ZNF513 Silent p.H382H 0.83 TCGA-L9-A7SV-01 2 27682361 27682361 G T IFT172 Missense_Mutation p.L891M 0.13 deleterious(0.01) benign(0.096) TCGA-L9-A7SV-01 2 29135492 29135492 A G WDR43 Silent p.L174L 0.70 TCGA-L9-A7SV-01 2 29293619 29293619 C A C2orf71 Missense_Mutation p.W1170L 0.07 tolerated(0.15) benign(0.046) TCGA-L9-A7SV-01 2 29295751 29295751 A T C2orf71 Missense_Mutation p.F459L 0.84 tolerated(1) benign(0.002) TCGA-L9-A7SV-01 2 31467209 31467209 G T EHD3 Silent p.A99A 0.06 TCGA-L9-A7SV-01 2 32958931 32958931 G T TTC27 Missense_Mutation p.V424L 0.12 deleterious(0.03) benign(0.021) TCGA-L9-A7SV-01 2 37292897 37292897 C A HEATR5B Splice_Site p.X445_splice 0.14 TCGA-L9-A7SV-01 2 44436459 44436459 G T PPM1B Silent p.R319R 0.27 TCGA-L9-A7SV-01 2 44503040 44503040 C A SLC3A1 Silent p.P122P 0.25 TCGA-L9-A7SV-01 2 45704154 45704154 T A SRBD1 Missense_Mutation p.H676L 0.25 deleterious(0) probably_damaging(0.99) TCGA-L9-A7SV-01 2 54128641 54128641 T A PSME4 Missense_Mutation p.H1044L 0.20 tolerated(0.1) benign(0.147) TCGA-L9-A7SV-01 2 61753540 61753540 C A XPO1 Intron 0.41 TCGA-L9-A7SV-01 2 62099300 62099300 C A CCT4 Missense_Mutation p.G470C 0.21 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 2 63053376 63053376 G A EHBP1 Missense_Mutation p.C156Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 2 66664948 66664948 G T MEIS1 Missense_Mutation p.R31M 0.24 deleterious(0.02) possibly_damaging(0.458) TCGA-L9-A7SV-01 2 66666989 66666989 C G MEIS1 Missense_Mutation p.P85R 0.40 deleterious(0) probably_damaging(0.966) TCGA-L9-A7SV-01 2 68873054 68873054 C A PROKR1 Missense_Mutation p.P34Q 0.24 tolerated(0.14) benign(0.275) TCGA-L9-A7SV-01 2 7033835 7033835 G A RSAD2 Splice_Site p.X307_splice 0.38 TCGA-L9-A7SV-01 2 71892361 71892361 T A DYSF Missense_Mutation p.H1748Q 0.26 tolerated(0.13) benign(0.001) TCGA-L9-A7SV-01 2 72802621 72802621 C G EXOC6B Missense_Mutation p.E282D 0.37 tolerated(0.2) benign(0.004) TCGA-L9-A7SV-01 2 73677391 73677391 G C ALMS1 Missense_Mutation p.G1245A 0.26 benign(0.097) TCGA-L9-A7SV-01 2 74273448 74273448 A T TET3 5'Flank 0.52 TCGA-L9-A7SV-01 2 77746350 77746350 G C LRRTM4 Missense_Mutation p.N215K 0.28 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 2 79365160 79365160 G T REG1P RNA 0.48 TCGA-L9-A7SV-01 2 79878717 79878717 G - CTNNA2 Frame_Shift_Del p.D13Tfs*10 0.22 TCGA-L9-A7SV-01 2 80101245 80101245 G T CTNNA2 Missense_Mutation p.R210L 0.24 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 2 80530451 80530451 G T LRRTM1 Missense_Mutation p.T165K 0.30 tolerated(0.07) benign(0.41) TCGA-L9-A7SV-01 2 80530545 80530545 G T LRRTM1 Silent p.R134R 0.27 TCGA-L9-A7SV-01 2 84517871 84517871 C G FUNDC2P2 RNA 0.31 TCGA-L9-A7SV-01 2 86067489 86067489 G A ST3GAL5 Silent p.A345A 0.29 TCGA-L9-A7SV-01 2 86968139 86968139 G A RMND5A Missense_Mutation p.D78N 0.15 tolerated(0.09) benign(0.009) TCGA-L9-A7SV-01 2 88082287 88082287 C T RGPD2 Nonsense_Mutation p.W1419* 0.21 TCGA-L9-A7SV-01 2 88407899 88407899 C A SMYD1 Nonsense_Mutation p.Y385* 0.47 TCGA-L9-A7SV-01 2 89309634 89309634 G A IGKV1-9 Missense_Mutation p.P66S 0.21 deleterious_low_confidence(0.01) probably_damaging(0.944) TCGA-L9-A7SV-01 2 89339728 89339728 C A IGKV1-12 Missense_Mutation p.S115I 0.10 deleterious(0.02) benign(0.097) TCGA-L9-A7SV-01 2 89339865 89339865 C A IGKV1-12 Silent p.L69L 0.23 TCGA-L9-A7SV-01 2 89399797 89399797 C A IGKV1-16 Missense_Mutation p.G11W 0.26 tolerated(0.06) possibly_damaging(0.866) TCGA-L9-A7SV-01 2 89986887 89986887 C A IGKV2D-29 Silent p.T56T 0.23 TCGA-L9-A7SV-01 2 90139135 90139135 G T IGKV1D-16 Missense_Mutation p.G11W 0.08 tolerated(0.05) possibly_damaging(0.496) TCGA-L9-A7SV-01 2 90249173 90249173 C T IGKV1D-43 Silent p.I43I 0.05 TCGA-L9-A7SV-01 2 91843517 91843517 C A AC027612.6 RNA 0.09 TCGA-L9-A7SV-01 2 97271172 97271172 C G KANSL3 Silent p.S606S 0.27 TCGA-L9-A7SV-01 2 99909015 99909015 G T LYG1 Missense_Mutation p.H44Q 0.28 tolerated(0.3) benign(0.008) TCGA-L9-A7SV-01 3 100948254 100948254 C G IMPG2 Missense_Mutation p.Q1201H 0.31 tolerated(1) benign(0.004) TCGA-L9-A7SV-01 3 108366866 108366866 A G DZIP3 Silent p.K623K 0.56 TCGA-L9-A7SV-01 3 111264079 111264079 G T CD96 Missense_Mutation p.R83I 0.20 tolerated(0.32) benign(0.002) TCGA-L9-A7SV-01 3 111394113 111394113 C A PLCXD2 Silent p.A7A 0.17 TCGA-L9-A7SV-01 3 111632351 111632351 G A PHLDB2 Silent p.R507R 0.21 TCGA-L9-A7SV-01 3 111769519 111769519 G T TMPRSS7 Missense_Mutation p.K238N 0.17 deleterious(0.04) benign(0.088) TCGA-L9-A7SV-01 3 111775869 111775869 C G TMPRSS7 Intron 0.22 TCGA-L9-A7SV-01 3 112992177 112992177 C A BOC Missense_Mutation p.T408N 0.50 tolerated(0.1) probably_damaging(0.99) TCGA-L9-A7SV-01 3 112998109 112998109 C G BOC Silent p.P609P 0.25 TCGA-L9-A7SV-01 3 114014585 114014585 G T TIGIT Silent p.V85V 0.24 TCGA-L9-A7SV-01 3 114014620 114014620 C G TIGIT Missense_Mutation p.S97W 0.59 tolerated(0.07) benign(0.139) TCGA-L9-A7SV-01 3 119378826 119378826 C A POPDC2 Nonsense_Mutation p.E149* 0.61 TCGA-L9-A7SV-01 3 119451177 119451177 A T MAATS1 Missense_Mutation p.E352V 0.22 deleterious(0.01) probably_damaging(0.935) TCGA-L9-A7SV-01 3 119451179 119451179 G T MAATS1 Missense_Mutation p.G353W 0.22 deleterious(0) probably_damaging(0.996) TCGA-L9-A7SV-01 3 119451290 119451290 G T MAATS1 Missense_Mutation p.V390L 0.33 tolerated(0.11) benign(0.012) TCGA-L9-A7SV-01 3 120871406 120871406 A T STXBP5L Missense_Mutation p.E251V 0.16 deleterious(0.05) probably_damaging(0.976) TCGA-L9-A7SV-01 3 121345700 121345700 C A FBXO40 Silent p.A691A 0.58 TCGA-L9-A7SV-01 3 121345828 121345828 T C FBXO40 3'UTR 0.30 TCGA-L9-A7SV-01 3 121388059 121388059 C A GOLGB1 Silent p.A3107A 0.45 TCGA-L9-A7SV-01 3 121641141 121641141 T C SLC15A2 Missense_Mutation p.C258R 0.16 deleterious(0) probably_damaging(0.985) TCGA-L9-A7SV-01 3 121641142 121641142 G A SLC15A2 Missense_Mutation p.C258Y 0.16 deleterious(0) possibly_damaging(0.877) TCGA-L9-A7SV-01 3 12195062 12195062 C A TIMP4 Missense_Mutation p.G210C 0.36 deleterious(0) possibly_damaging(0.701) TCGA-L9-A7SV-01 3 122631793 122631793 G C SEMA5B Silent p.R928R 0.41 TCGA-L9-A7SV-01 3 123221442 123221442 T C PTPLB Silent p.L156L 0.29 TCGA-L9-A7SV-01 3 123426763 123426763 G T MYLK Missense_Mutation p.A743D 0.24 deleterious(0.01) benign(0.149) TCGA-L9-A7SV-01 3 123427610 123427610 G T MYLK Missense_Mutation p.T692K 0.33 tolerated(0.76) possibly_damaging(0.832) TCGA-L9-A7SV-01 3 123688966 123688966 G A ROPN1 Silent p.Y165Y 0.24 TCGA-L9-A7SV-01 3 12475626 12475626 C A PPARG Silent p.I500I 0.34 TCGA-L9-A7SV-01 3 125877269 125877269 C A ALDH1L1 Missense_Mutation p.R124L 0.25 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-L9-A7SV-01 3 129824435 129824435 C A FAM86HP RNA 0.53 TCGA-L9-A7SV-01 3 130380674 130380674 C A COL6A6 Missense_Mutation p.D2008E 0.25 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 3 132185171 132185171 G T DNAJC13 Missense_Mutation p.S666I 0.28 deleterious(0) probably_damaging(0.913) TCGA-L9-A7SV-01 3 132201159 132201159 G T DNAJC13 Silent p.P988P 0.21 TCGA-L9-A7SV-01 3 132224254 132224254 A T DNAJC13 Nonsense_Mutation p.K1665* 0.37 TCGA-L9-A7SV-01 3 133476699 133476699 C A TF Missense_Mutation p.H319Q 0.20 tolerated(0.52) benign(0.008) TCGA-L9-A7SV-01 3 134369722 134369722 C A KY Missense_Mutation p.Q27H 0.29 tolerated_low_confidence(0.17) benign(0.008) TCGA-L9-A7SV-01 3 134670868 134670868 A G EPHB1 Missense_Mutation p.E260G 0.26 deleterious(0) probably_damaging(0.931) TCGA-L9-A7SV-01 3 134884854 134884854 G T EPHB1 Missense_Mutation p.G544C 0.21 tolerated(0.12) probably_damaging(0.995) TCGA-L9-A7SV-01 3 135721516 135721516 G T PPP2R3A Missense_Mutation p.Q392H 0.23 tolerated_low_confidence(0.13) benign(0.172) TCGA-L9-A7SV-01 3 136573785 136573785 C A SLC35G2 Silent p.P161P 0.25 TCGA-L9-A7SV-01 3 13679116 13679116 G T FBLN2 Silent p.A1131A 0.30 TCGA-L9-A7SV-01 3 1371509 1371509 G T CNTN6 Missense_Mutation p.K418N 0.16 tolerated(0.19) benign(0.001) TCGA-L9-A7SV-01 3 1371511 1371511 C T CNTN6 Missense_Mutation p.S419F 0.16 tolerated(0.06) probably_damaging(0.985) TCGA-L9-A7SV-01 3 1371516 1371516 G A CNTN6 Missense_Mutation p.V421I 0.18 tolerated(0.33) possibly_damaging(0.491) TCGA-L9-A7SV-01 3 137786447 137786447 C G DZIP1L Missense_Mutation p.R643P 0.31 tolerated(0.24) benign(0.002) TCGA-L9-A7SV-01 3 137843592 137843592 C A A4GNT Missense_Mutation p.E179D 0.31 tolerated(0.36) benign(0.014) TCGA-L9-A7SV-01 3 140281736 140281736 C A CLSTN2 Missense_Mutation p.R766S 0.31 tolerated(0.08) benign(0.021) TCGA-L9-A7SV-01 3 142606602 142606602 C A PCOLCE2 Missense_Mutation p.G34V 0.20 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 3 142681420 142681420 C A PAQR9 Missense_Mutation p.M253I 0.21 tolerated(0.46) probably_damaging(0.932) TCGA-L9-A7SV-01 3 14708434 14708434 A T CCDC174 Missense_Mutation p.Y235F 0.42 tolerated(0.06) possibly_damaging(0.874) TCGA-L9-A7SV-01 3 15070154 15070154 T C NR2C2 Missense_Mutation p.L306P 0.43 deleterious(0) benign(0.006) TCGA-L9-A7SV-01 3 151012737 151012737 G T GPR87 Silent p.V99V 0.25 TCGA-L9-A7SV-01 3 151093942 151093942 C A MED12L Silent p.G1296G 0.29 TCGA-L9-A7SV-01 3 160129708 160129708 G T SMC4 Missense_Mutation p.G230C 0.20 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 3 160786849 160786849 G T PPM1L Missense_Mutation p.K329N 0.30 deleterious(0) possibly_damaging(0.771) TCGA-L9-A7SV-01 3 16254173 16254173 C A GALNT15 Missense_Mutation p.A432D 0.40 tolerated(0.12) possibly_damaging(0.779) TCGA-L9-A7SV-01 3 16261510 16261510 C A GALNT15 Silent p.R540R 0.49 TCGA-L9-A7SV-01 3 164733018 164733018 G T SI Missense_Mutation p.P1298T 0.33 deleterious(0) probably_damaging(0.959) TCGA-L9-A7SV-01 3 165503946 165503946 G A BCHE Silent p.V557V 0.36 TCGA-L9-A7SV-01 3 167543129 167543129 A T SERPINI1 3'UTR 0.23 TCGA-L9-A7SV-01 3 169985727 169985727 G T PRKCI Missense_Mutation p.R130L 0.64 deleterious(0.03) probably_damaging(0.987) TCGA-L9-A7SV-01 3 172166054 172166054 G A GHSR Silent p.C50C 0.63 TCGA-L9-A7SV-01 3 172478014 172478014 A C ECT2 Silent p.T215T 0.55 TCGA-L9-A7SV-01 3 172607456 172607456 G C SPATA16 Nonsense_Mutation p.Y538* 0.54 TCGA-L9-A7SV-01 3 17279813 17279813 C A TBC1D5 Missense_Mutation p.S477I 0.42 deleterious(0.03) benign(0.128) TCGA-L9-A7SV-01 3 173998981 173998981 C G NLGN1 Missense_Mutation p.T787S 0.35 tolerated_low_confidence(1) benign(0.015) TCGA-L9-A7SV-01 3 175165158 175165159 - G NAALADL2 Frame_Shift_Ins p.N411Kfs*2 0.65 TCGA-L9-A7SV-01 3 179066666 179066666 G C MFN1 Missense_Mutation p.K9N 0.27 deleterious(0) benign(0.13) TCGA-L9-A7SV-01 3 179322427 179322427 G A MRPL47 5'UTR 0.30 TCGA-L9-A7SV-01 3 179597731 179597731 G A PEX5L Missense_Mutation p.S164L 0.31 tolerated_low_confidence(0.07) benign(0.01) TCGA-L9-A7SV-01 3 182683427 182683427 C A DCUN1D1 Missense_Mutation p.A40S 0.47 tolerated(0.08) possibly_damaging(0.448) TCGA-L9-A7SV-01 3 183491480 183491480 G T YEATS2 Missense_Mutation p.G756C 0.54 deleterious_low_confidence(0) probably_damaging(1) TCGA-L9-A7SV-01 3 183777710 183777710 C A HTR3C Silent p.P340P 0.62 TCGA-L9-A7SV-01 3 184104715 184104715 C A CHRD Missense_Mutation p.P760H 0.21 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 3 185375099 185375099 G T IGF2BP2 Missense_Mutation p.A454E 0.56 tolerated(0.18) probably_damaging(0.971) TCGA-L9-A7SV-01 3 186331066 186331066 G T AHSG Missense_Mutation p.D46Y 0.72 deleterious(0) probably_damaging(0.929) TCGA-L9-A7SV-01 3 186917357 186917357 C A RTP1 Nonsense_Mutation p.C97* 0.32 TCGA-L9-A7SV-01 3 188590510 188590510 G T LPP Missense_Mutation p.A557S 0.41 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 3 194344327 194344327 C T TMEM44 Nonsense_Mutation p.W152* 0.21 TCGA-L9-A7SV-01 3 19559560 19559560 C G KCNH8 Missense_Mutation p.N871K 0.38 deleterious(0.03) possibly_damaging(0.787) TCGA-L9-A7SV-01 3 196387547 196387547 G T NRROS Missense_Mutation p.D345Y 0.22 tolerated(0.09) possibly_damaging(0.868) TCGA-L9-A7SV-01 3 20212686 20212686 G A SGOL1 Silent p.L441L 0.44 TCGA-L9-A7SV-01 3 21606151 21606151 A T ZNF385D Missense_Mutation p.I64K 0.19 deleterious(0) benign(0.278) TCGA-L9-A7SV-01 3 3072623 3072623 G T CNTN4 Missense_Mutation p.D583Y 0.34 deleterious(0) probably_damaging(0.997) TCGA-L9-A7SV-01 3 30842391 30842391 C A GADL1 Missense_Mutation p.A414S 0.29 tolerated(0.21) benign(0.199) TCGA-L9-A7SV-01 3 3085315 3085315 C A CNTN4 Nonsense_Mutation p.S913* 0.53 TCGA-L9-A7SV-01 3 31641868 31641868 G T STT3B Missense_Mutation p.G265V 0.33 deleterious(0) probably_damaging(0.994) TCGA-L9-A7SV-01 3 33249409 33249409 C T SUSD5 Silent p.V100V 0.54 TCGA-L9-A7SV-01 3 33883431 33883431 G T PDCD6IP Silent p.V413V 0.32 TCGA-L9-A7SV-01 3 36779008 36779008 G T DCLK3 Silent p.A381A 0.51 TCGA-L9-A7SV-01 3 36873104 36873104 C A TRANK1 Missense_Mutation p.G2613V 0.32 deleterious(0) probably_damaging(0.967) TCGA-L9-A7SV-01 3 38793795 38793795 G T SCN10A Missense_Mutation p.P557H 0.45 tolerated(0.22) benign(0.005) TCGA-L9-A7SV-01 3 39229528 39229528 G C XIRP1 Missense_Mutation p.T470S 0.44 tolerated(0.39) benign(0.028) TCGA-L9-A7SV-01 3 424333 424333 C G CHL1 Missense_Mutation p.H719D 0.29 deleterious(0) possibly_damaging(0.602) TCGA-L9-A7SV-01 3 42727308 42727308 G T KLHL40 Silent p.P66P 0.47 TCGA-L9-A7SV-01 3 440019 440019 G A CHL1 Nonsense_Mutation p.W1068* 0.35 TCGA-L9-A7SV-01 3 45436077 45436077 G C LARS2 Silent p.T44T 0.33 TCGA-L9-A7SV-01 3 46542162 46542162 C A RTP3 Missense_Mutation p.L158M 0.53 deleterious(0.03) probably_damaging(0.979) TCGA-L9-A7SV-01 3 47543284 47543284 C A ELP6 Missense_Mutation p.K127N 0.32 tolerated(0.4) benign(0.222) TCGA-L9-A7SV-01 3 48266819 48266819 C T CAMP Missense_Mutation p.R143W 0.35 tolerated(0.06) benign(0.055) TCGA-L9-A7SV-01 3 49135662 49135662 G T QARS Missense_Mutation p.T705N 0.41 tolerated(1) benign(0.003) TCGA-L9-A7SV-01 3 49691211 49691211 C A BSN Missense_Mutation p.R1408S 0.39 unknown(0) TCGA-L9-A7SV-01 3 49693146 49693146 G C BSN Missense_Mutation p.A2053P 0.24 unknown(0) TCGA-L9-A7SV-01 3 51664401 51664401 G T RAD54L2 Missense_Mutation p.D199Y 0.28 deleterious(0.01) probably_damaging(0.979) TCGA-L9-A7SV-01 3 51751734 51751734 A G GRM2 Missense_Mutation p.I816V 0.31 tolerated(0.39) benign(0.077) TCGA-L9-A7SV-01 3 52400770 52400770 G T DNAH1 Missense_Mutation p.A1878S 0.39 probably_damaging(0.951) TCGA-L9-A7SV-01 3 52842664 52842664 C G ITIH3 Silent p.V880V 0.48 TCGA-L9-A7SV-01 3 52842732 52842732 C G ITIH3 3'UTR 0.35 TCGA-L9-A7SV-01 3 56468626 56468626 G A ERC2 Missense_Mutation p.S137F 0.41 deleterious(0.03) possibly_damaging(0.616) TCGA-L9-A7SV-01 3 56651221 56651221 C T CCDC66 Missense_Mutation p.S642F 0.37 deleterious(0) probably_damaging(0.998) TCGA-L9-A7SV-01 3 57132555 57132555 G T IL17RD Missense_Mutation p.D392E 0.39 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 3 57743439 57743439 C A SLMAP Missense_Mutation p.H21N 0.48 tolerated(0.13) benign(0.437) TCGA-L9-A7SV-01 3 58111307 58111307 G T FLNB Splice_Site p.X1300_splice 0.31 TCGA-L9-A7SV-01 3 65415289 65415289 C A MAGI1 Missense_Mutation p.K691N 0.42 deleterious(0) probably_damaging(0.996) TCGA-L9-A7SV-01 3 7340473 7340473 C A GRM7 Missense_Mutation p.S280Y 0.45 deleterious(0.01) possibly_damaging(0.452) TCGA-L9-A7SV-01 3 74420439 74420439 G T CNTN3 Missense_Mutation p.S189Y 0.35 deleterious(0.01) possibly_damaging(0.474) TCGA-L9-A7SV-01 3 85775664 85775664 G T CADM2 Missense_Mutation p.L11F 0.58 deleterious(0.04) benign(0.018) TCGA-L9-A7SV-01 3 87017960 87017960 G T VGLL3 Silent p.R239R 0.30 TCGA-L9-A7SV-01 3 89456519 89456519 G T EPHA3 Silent p.G565G 0.29 TCGA-L9-A7SV-01 3 93803026 93803026 A G NSUN3 Silent p.E66E 0.25 TCGA-L9-A7SV-01 3 96706625 96706625 G T EPHA6 Missense_Mutation p.C301F 0.29 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 3 98110270 98110270 T - OR5K3 Frame_Shift_Del p.L254Pfs*25 0.18 TCGA-L9-A7SV-01 4 103553174 103553174 T C MANBA 3'UTR 0.56 TCGA-L9-A7SV-01 4 103964475 103964475 C A SLC9B2 Missense_Mutation p.G375V 0.20 deleterious(0) possibly_damaging(0.686) TCGA-L9-A7SV-01 4 106746933 106746933 T C GSTCD Silent p.Y502Y 0.57 TCGA-L9-A7SV-01 4 107258088 107258088 A T AIMP1 Missense_Mutation p.L246F 0.25 deleterious(0.01) benign(0.315) TCGA-L9-A7SV-01 4 107268722 107268722 G T AIMP1 Missense_Mutation p.W295L 0.32 deleterious(0.01) probably_damaging(0.991) TCGA-L9-A7SV-01 4 109571910 109571910 G T OSTC Silent p.V33V 0.20 TCGA-L9-A7SV-01 4 109745199 109745199 C A COL25A1 Intron 0.22 TCGA-L9-A7SV-01 4 110786422 110786422 A T LRIT3 Intron 0.60 TCGA-L9-A7SV-01 4 111539411 111539411 T A PITX2 Missense_Mutation p.D282V 0.23 deleterious(0) probably_damaging(0.986) TCGA-L9-A7SV-01 4 113461019 113461019 C G C4orf21 Missense_Mutation p.G2058R 0.27 deleterious(0) possibly_damaging(0.793) TCGA-L9-A7SV-01 4 113540783 113540783 C A C4orf21 Missense_Mutation p.A139S 0.21 deleterious(0.01) benign(0.201) TCGA-L9-A7SV-01 4 113540784 113540784 A G C4orf21 Silent p.A138A 0.21 TCGA-L9-A7SV-01 4 114199068 114199068 G T ANK2 Missense_Mutation p.A587S 0.31 probably_damaging(0.991) TCGA-L9-A7SV-01 4 114251412 114251412 A T ANK2 Missense_Mutation p.S971C 0.25 probably_damaging(0.997) TCGA-L9-A7SV-01 4 114277143 114277143 C A ANK2 Missense_Mutation p.P2457T 0.32 probably_damaging(1) TCGA-L9-A7SV-01 4 115792015 115792015 C G NDST4 Missense_Mutation p.W543S 0.30 deleterious(0.01) benign(0) TCGA-L9-A7SV-01 4 122681360 122681360 C A TMEM155 3'UTR 0.46 TCGA-L9-A7SV-01 4 122775937 122775937 C G BBS7 Missense_Mutation p.G214R 0.37 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 4 122800980 122800980 C A TRPC3 Nonsense_Mutation p.E893* 0.46 TCGA-L9-A7SV-01 4 128625426 128625426 G C INTU Missense_Mutation p.G516A 0.38 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 4 134073194 134073194 G A PCDH10 Nonsense_Mutation p.W633* 0.32 TCGA-L9-A7SV-01 4 138449650 138449650 C G PCDH18 Missense_Mutation p.D908H 0.37 tolerated(0.17) possibly_damaging(0.838) TCGA-L9-A7SV-01 4 138452462 138452462 C A PCDH18 Missense_Mutation p.V261F 0.32 tolerated(0.12) possibly_damaging(0.493) TCGA-L9-A7SV-01 4 148867814 148867814 G T ARHGAP10 Missense_Mutation p.W450C 0.28 deleterious(0.01) possibly_damaging(0.897) TCGA-L9-A7SV-01 4 154318466 154318466 G T MND1 Silent p.P149P 0.31 TCGA-L9-A7SV-01 4 154501976 154501976 A T KIAA0922 Splice_Site p.X221_splice 0.48 TCGA-L9-A7SV-01 4 155219732 155219732 G T DCHS2 Missense_Mutation p.P1457T 0.46 deleterious(0.01) possibly_damaging(0.624) TCGA-L9-A7SV-01 4 162508631 162508631 G T FSTL5 Missense_Mutation p.Q331K 0.34 deleterious(0) probably_damaging(0.952) TCGA-L9-A7SV-01 4 165962564 165962564 C A TRIM60 Missense_Mutation p.A447D 0.43 tolerated(0.07) possibly_damaging(0.649) TCGA-L9-A7SV-01 4 166795126 166795126 G T TLL1 Nonsense_Mutation p.E24* 0.41 TCGA-L9-A7SV-01 4 166935704 166935704 G C TLL1 Missense_Mutation p.R345T 0.38 deleterious(0) benign(0.356) TCGA-L9-A7SV-01 4 173873199 173873199 G T GALNTL6 Silent p.R387R 0.30 TCGA-L9-A7SV-01 4 174448472 174448472 T A HAND2 Missense_Mutation p.T204S 0.23 deleterious(0.04) probably_damaging(0.935) TCGA-L9-A7SV-01 4 177648957 177648957 G T VEGFC Missense_Mutation p.T176N 0.40 deleterious(0.01) benign(0.269) TCGA-L9-A7SV-01 4 183694627 183694627 A G TENM3 Missense_Mutation p.Y1632C 0.43 deleterious(0) possibly_damaging(0.827) TCGA-L9-A7SV-01 4 185940085 185940085 G T HELT Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0) benign(0.107) TCGA-L9-A7SV-01 4 185941928 185941928 G A HELT 3'Flank 0.45 TCGA-L9-A7SV-01 4 187206793 187206793 G T F11 Missense_Mutation p.V436L 0.24 tolerated(1) benign(0.002) TCGA-L9-A7SV-01 4 187455345 187455345 C A MTNR1A Missense_Mutation p.S184I 0.40 deleterious(0) possibly_damaging(0.507) TCGA-L9-A7SV-01 4 188924477 188924477 T C ZFP42 Silent p.A172A 0.30 TCGA-L9-A7SV-01 4 189022338 189022338 C T TRIML2 Missense_Mutation p.E68K 0.31 tolerated(0.07) possibly_damaging(0.53) TCGA-L9-A7SV-01 4 189064812 189064812 C A TRIML1 Intron 0.61 TCGA-L9-A7SV-01 4 23816228 23816228 C A PPARGC1A Missense_Mutation p.G293V 0.38 deleterious(0) probably_damaging(0.981) TCGA-L9-A7SV-01 4 25398363 25398363 G T ANAPC4 Missense_Mutation p.G380V 0.35 deleterious(0.01) probably_damaging(0.995) TCGA-L9-A7SV-01 4 26483742 26483742 A T CCKAR Missense_Mutation p.C269S 0.34 deleterious(0.02) probably_damaging(0.995) TCGA-L9-A7SV-01 4 3432178 3432178 G C RGS12 Missense_Mutation p.D1204H 0.38 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 4 3449251 3449251 G T HGFAC Missense_Mutation p.G463V 0.39 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 4 3478223 3478223 C A DOK7 Silent p.A162A 0.28 TCGA-L9-A7SV-01 4 38879885 38879885 G T FAM114A1 Silent p.G62G 0.59 TCGA-L9-A7SV-01 4 40245018 40245018 C T RHOH Silent p.S4S 0.42 TCGA-L9-A7SV-01 4 41984726 41984726 G T DCAF4L1 Missense_Mutation p.R306M 0.45 tolerated(0.34) benign(0.044) TCGA-L9-A7SV-01 4 42003636 42003636 G T SLC30A9 Missense_Mutation p.W38L 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.787) TCGA-L9-A7SV-01 4 47548685 47548685 G T ATP10D Missense_Mutation p.D481Y 0.33 deleterious(0) probably_damaging(0.923) TCGA-L9-A7SV-01 4 47850234 47850234 C A NFXL1 Silent p.V894V 0.50 TCGA-L9-A7SV-01 4 52936069 52936069 C A SPATA18 Missense_Mutation p.Q169K 0.35 deleterious(0.04) possibly_damaging(0.486) TCGA-L9-A7SV-01 4 55143628 55143628 T A PDGFRA Silent p.P620P 0.36 TCGA-L9-A7SV-01 4 56336920 56336920 C A CLOCK Silent p.V134V 0.24 TCGA-L9-A7SV-01 4 57182744 57182744 G T KIAA1211 Nonsense_Mutation p.G1026* 0.45 TCGA-L9-A7SV-01 4 57193817 57193817 C A KIAA1211 Silent p.I1183I 0.44 TCGA-L9-A7SV-01 4 65155467 65155467 G T TECRL Missense_Mutation p.H265N 0.32 deleterious(0.02) probably_damaging(0.994) TCGA-L9-A7SV-01 4 68490716 68490716 C A UBA6 Missense_Mutation p.G903V 0.27 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 4 69195728 69195728 C A YTHDC1 Missense_Mutation p.W447C 0.33 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 4 69816863 69816863 G T UGT2A3 Missense_Mutation p.L206M 0.37 tolerated(1) benign(0.14) TCGA-L9-A7SV-01 4 70066304 70066304 C A UGT2B11 Missense_Mutation p.D482Y 0.37 deleterious(0) probably_damaging(0.98) TCGA-L9-A7SV-01 4 70361499 70361499 C G UGT2B4 Silent p.L27L 0.27 TCGA-L9-A7SV-01 4 70513387 70513387 G T UGT2A1 5'UTR 0.53 TCGA-L9-A7SV-01 4 70599965 70599965 A T SULT1B1 Silent p.R131R 0.59 TCGA-L9-A7SV-01 4 70920139 70920139 G C HTN1 Missense_Mutation p.R25T 0.43 deleterious_low_confidence(0.02) possibly_damaging(0.765) TCGA-L9-A7SV-01 4 71024562 71024562 C A C4orf40 Missense_Mutation p.P198H 0.30 deleterious(0) unknown(0) TCGA-L9-A7SV-01 4 71465272 71465272 G T AMBN Missense_Mutation p.G68V 0.16 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 4 72338512 72338512 G T SLC4A4 Missense_Mutation p.L576F 0.37 deleterious(0.03) probably_damaging(0.987) TCGA-L9-A7SV-01 4 74285310 74285310 A T ALB Missense_Mutation p.E580V 0.38 deleterious(0) benign(0.187) TCGA-L9-A7SV-01 4 74352727 74352727 C A AFM Missense_Mutation p.P176T 0.34 tolerated(0.07) possibly_damaging(0.888) TCGA-L9-A7SV-01 4 74352729 74352729 T G AFM Silent p.P176P 0.33 TCGA-L9-A7SV-01 4 76943931 76943931 C A CXCL10 Missense_Mutation p.S34I 0.48 tolerated(0.14) benign(0.011) TCGA-L9-A7SV-01 4 77936099 77936099 A C SEPT11 Missense_Mutation p.S206R 0.26 tolerated(0.05) benign(0.049) TCGA-L9-A7SV-01 4 79387580 79387580 G T FRAS1 Silent p.G2416G 0.38 TCGA-L9-A7SV-01 4 80247002 80247002 G T NAA11 Missense_Mutation p.D10E 0.27 deleterious(0) probably_damaging(0.993) TCGA-L9-A7SV-01 4 83277726 83277726 C A HNRNPD Missense_Mutation p.G322C 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-L9-A7SV-01 4 85639611 85639611 G C WDFY3 Missense_Mutation p.T2573S 0.34 tolerated(0.45) benign(0.023) TCGA-L9-A7SV-01 4 88106552 88106552 C A KLHL8 Missense_Mutation p.V206L 0.25 tolerated(1) benign(0.003) TCGA-L9-A7SV-01 4 90034830 90034830 A T TIGD2 Silent p.R235R 0.26 TCGA-L9-A7SV-01 4 90168908 90168908 C A GPRIN3 3'UTR 0.25 TCGA-L9-A7SV-01 4 95497016 95497016 G T PDLIM5 Intron 0.28 TCGA-L9-A7SV-01 5 10450224 10450224 G T ROPN1L Missense_Mutation p.G139V 0.14 tolerated(0.34) possibly_damaging(0.889) TCGA-L9-A7SV-01 5 108207842 108207842 G T FER Silent p.L284L 0.83 TCGA-L9-A7SV-01 5 108281912 108281912 G T FER Missense_Mutation p.G440C 0.25 tolerated(0.19) benign(0.376) TCGA-L9-A7SV-01 5 108516532 108516532 T G FER Silent p.G711G 0.33 TCGA-L9-A7SV-01 5 108516533 108516533 G T FER Nonsense_Mutation p.G712* 0.34 TCGA-L9-A7SV-01 5 108714435 108714435 C T PJA2 Silent p.Q251Q 0.14 TCGA-L9-A7SV-01 5 112175434 112175434 A G APC Silent p.P1381P 0.79 TCGA-L9-A7SV-01 5 118529583 118529583 G T DMXL1 Missense_Mutation p.D2459Y 0.80 deleterious(0) benign(0.398) TCGA-L9-A7SV-01 5 1246012 1246012 C G SLC6A18 Missense_Mutation p.A569G 0.22 tolerated(0.06) possibly_damaging(0.472) TCGA-L9-A7SV-01 5 126746206 126746206 A T MEGF10 Missense_Mutation p.E348V 0.45 tolerated(0.08) benign(0.017) TCGA-L9-A7SV-01 5 126769063 126769063 T A MEGF10 Missense_Mutation p.C568S 0.72 deleterious(0) possibly_damaging(0.731) TCGA-L9-A7SV-01 5 127614521 127614521 C A FBN2 Missense_Mutation p.G2384V 0.43 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 5 131007717 131007717 T A FNIP1 Missense_Mutation p.E807V 0.15 tolerated(0.27) benign(0.353) TCGA-L9-A7SV-01 5 132403186 132403186 G T HSPA4 Missense_Mutation p.E81D 0.80 deleterious(0.02) benign(0.155) TCGA-L9-A7SV-01 5 135587353 135587353 C A TRPC7 Silent p.V521V 0.50 TCGA-L9-A7SV-01 5 135692505 135692505 C A TRPC7 Nonsense_Mutation p.E191* 0.41 TCGA-L9-A7SV-01 5 13794169 13794169 T A DNAH5 Splice_Site p.X2630_splice 0.07 TCGA-L9-A7SV-01 5 13871828 13871828 C A DNAH5 Missense_Mutation p.W1148L 0.21 benign(0.307) TCGA-L9-A7SV-01 5 13901539 13901539 C A DNAH5 Missense_Mutation p.G625V 0.20 probably_damaging(0.988) TCGA-L9-A7SV-01 5 140166685 140166685 C A PCDHA1 Missense_Mutation p.D270E 0.76 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-L9-A7SV-01 5 140182402 140182402 G T PCDHA3 Silent p.A540A 0.82 TCGA-L9-A7SV-01 5 140221027 140221027 C G PCDHA8 Missense_Mutation p.H41D 0.45 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-L9-A7SV-01 5 140431927 140431927 C T PCDHB1 Missense_Mutation p.T291M 0.41 deleterious(0.01) benign(0.374) TCGA-L9-A7SV-01 5 140476417 140476417 C A PCDHB2 Silent p.A681A 0.36 TCGA-L9-A7SV-01 5 140482270 140482270 C A PCDHB3 Silent p.A679A 0.29 TCGA-L9-A7SV-01 5 140590417 140590417 C A PCDHB12 Missense_Mutation p.D646E 0.55 deleterious_low_confidence(0.01) possibly_damaging(0.558) TCGA-L9-A7SV-01 5 140605207 140605207 G T PCDHB14 Silent p.A710A 0.37 TCGA-L9-A7SV-01 5 140682784 140682784 C T SLC25A2 Missense_Mutation p.G217R 0.23 deleterious(0) probably_damaging(0.997) TCGA-L9-A7SV-01 5 140740014 140740014 G T PCDHGB2 Silent p.L104L 0.38 TCGA-L9-A7SV-01 5 140744173 140744173 G T PCDHGA5 Silent p.R92R 0.28 TCGA-L9-A7SV-01 5 140794798 140794798 G T PCDHGA10 Missense_Mutation p.A686S 0.73 tolerated_low_confidence(0.22) benign(0.007) TCGA-L9-A7SV-01 5 141023813 141023813 C A FCHSD1 Missense_Mutation p.G612V 0.73 deleterious(0.01) benign(0.011) TCGA-L9-A7SV-01 5 142780186 142780186 C A NR3C1 Silent p.A73A 0.76 TCGA-L9-A7SV-01 5 14330943 14330943 G T TRIO Silent p.V596V 0.21 TCGA-L9-A7SV-01 5 14330944 14330944 G T TRIO Missense_Mutation p.G597W 0.20 probably_damaging(0.953) TCGA-L9-A7SV-01 5 14369527 14369527 A G TRIO Silent p.E1037E 0.07 TCGA-L9-A7SV-01 5 148627394 148627394 G T ABLIM3 Missense_Mutation p.R534L 0.62 deleterious(0.02) probably_damaging(0.916) TCGA-L9-A7SV-01 5 149006822 149006822 G T ARHGEF37 Missense_Mutation p.V550L 0.34 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 5 150090695 150090695 C T DCTN4 3'UTR 0.57 TCGA-L9-A7SV-01 5 150416376 150416376 G A TNIP1 Missense_Mutation p.T457M 0.29 deleterious(0.04) benign(0.09) TCGA-L9-A7SV-01 5 154315457 154315457 G A GEMIN5 Silent p.P151P 0.74 TCGA-L9-A7SV-01 5 154393356 154393356 C A KIF4B 5'UTR 0.91 TCGA-L9-A7SV-01 5 154393357 154393357 G A KIF4B 5'UTR 0.91 TCGA-L9-A7SV-01 5 156381553 156381553 C A TIMD4 Silent p.P91P 0.85 TCGA-L9-A7SV-01 5 156592629 156592629 C A FAM71B Missense_Mutation p.S184I 0.78 deleterious(0) possibly_damaging(0.835) TCGA-L9-A7SV-01 5 158223433 158223433 C A EBF1 Missense_Mutation p.G277C 0.82 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 5 15928387 15928387 G A FBXL7 Silent p.V172V 0.16 TCGA-L9-A7SV-01 5 159707701 159707701 C T CCNJL Silent p.K37K 0.50 TCGA-L9-A7SV-01 5 161117306 161117306 C - GABRA6 Frame_Shift_Del p.Q259Rfs*23 0.37 TCGA-L9-A7SV-01 5 161324348 161324348 T G GABRA1 Missense_Mutation p.F431V 0.16 deleterious(0) probably_damaging(0.982) TCGA-L9-A7SV-01 5 161578753 161578753 C T GABRG2 Silent p.S422S 0.78 TCGA-L9-A7SV-01 5 161580247 161580247 C A GABRG2 Missense_Mutation p.T474K 0.78 tolerated(0.08) possibly_damaging(0.46) TCGA-L9-A7SV-01 5 163414 163414 A T PLEKHG4B Missense_Mutation p.Q720L 0.12 tolerated(1) benign(0.001) TCGA-L9-A7SV-01 5 168127682 168127682 G T SLIT3 Silent p.G949G 0.40 TCGA-L9-A7SV-01 5 169111285 169111285 T A DOCK2 Missense_Mutation p.V231E 0.45 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 5 169230064 169230064 T A DOCK2 Missense_Mutation p.C853S 0.72 tolerated(0.05) benign(0.348) TCGA-L9-A7SV-01 5 175763817 175763817 C T SIMC1 Missense_Mutation p.P322S 0.82 tolerated(0.12) possibly_damaging(0.728) TCGA-L9-A7SV-01 5 177669352 177669352 C A COL23A1 Missense_Mutation p.R495L 0.29 deleterious(0) probably_damaging(0.964) TCGA-L9-A7SV-01 5 178556978 178556978 C A ADAMTS2 Missense_Mutation p.E804D 0.70 tolerated(0.06) possibly_damaging(0.874) TCGA-L9-A7SV-01 5 178559231 178559231 C A ADAMTS2 Missense_Mutation p.A764S 0.50 tolerated(0.06) benign(0.126) TCGA-L9-A7SV-01 5 179565020 179565020 G T RASGEF1C Silent p.V11V 0.96 TCGA-L9-A7SV-01 5 180622435 180622435 G C TRIM7 Missense_Mutation p.L423V 0.38 tolerated(0.1) probably_damaging(0.999) TCGA-L9-A7SV-01 5 21783527 21783527 C A CDH12 Nonsense_Mutation p.E445* 0.76 TCGA-L9-A7SV-01 5 24535336 24535336 G A CDH10 Silent p.Y233Y 0.04 TCGA-L9-A7SV-01 5 2748996 2748996 C A IRX2 Missense_Mutation p.G276C 0.10 tolerated(0.05) benign(0.145) TCGA-L9-A7SV-01 5 31799314 31799314 G T PDZD2 5'UTR 0.17 TCGA-L9-A7SV-01 5 32780847 32780847 C A NPR3 Silent p.S405S 0.20 TCGA-L9-A7SV-01 5 33624436 33624436 C A ADAMTS12 Missense_Mutation p.E681D 0.07 deleterious(0.02) possibly_damaging(0.648) TCGA-L9-A7SV-01 5 33641914 33641914 C A ADAMTS12 Splice_Site p.X573_splice 0.70 TCGA-L9-A7SV-01 5 33684125 33684125 G T ADAMTS12 Silent p.R224R 0.18 TCGA-L9-A7SV-01 5 33937013 33937013 G T RXFP3 Missense_Mutation p.L56F 0.15 tolerated_low_confidence(0.15) benign(0.061) TCGA-L9-A7SV-01 5 33937020 33937020 G T RXFP3 Missense_Mutation p.G59C 0.05 tolerated(0.07) probably_damaging(0.965) TCGA-L9-A7SV-01 5 33947433 33947433 G C SLC45A2 Nonsense_Mutation p.Y401* 0.16 TCGA-L9-A7SV-01 5 33989450 33989450 A T AMACR Silent p.T299T 0.12 TCGA-L9-A7SV-01 5 34954686 34954686 A G DNAJC21 Missense_Mutation p.H533R 0.74 tolerated(0.11) possibly_damaging(0.669) TCGA-L9-A7SV-01 5 35641771 35641771 G T SPEF2 Missense_Mutation p.D134Y 0.22 deleterious(0.01) possibly_damaging(0.877) TCGA-L9-A7SV-01 5 35873713 35873713 T A IL7R Missense_Mutation p.S223R 0.12 deleterious(0) probably_damaging(0.962) TCGA-L9-A7SV-01 5 35876103 35876103 A T IL7R Missense_Mutation p.N299Y 0.71 deleterious(0) probably_damaging(0.992) TCGA-L9-A7SV-01 5 35954310 35954310 C A UGT3A1 Missense_Mutation p.K522N 0.16 deleterious(0.01) benign(0.424) TCGA-L9-A7SV-01 5 35957362 35957362 G A UGT3A1 Missense_Mutation p.H335Y 0.12 tolerated(0.28) benign(0.049) TCGA-L9-A7SV-01 5 3599613 3599613 G T IRX1 Missense_Mutation p.R184L 0.07 deleterious(0) probably_damaging(0.982) TCGA-L9-A7SV-01 5 36986210 36986210 G T NIPBL Missense_Mutation p.M976I 0.10 tolerated_low_confidence(0.53) benign(0) TCGA-L9-A7SV-01 5 37167264 37167264 T A C5orf42 Missense_Mutation p.S2429C 0.15 tolerated(0.14) benign(0.022) TCGA-L9-A7SV-01 5 39315903 39315903 G T C9 Missense_Mutation p.L282I 0.09 tolerated(0.2) benign(0.405) TCGA-L9-A7SV-01 5 39377260 39377260 G T DAB2 Silent p.P543P 0.16 TCGA-L9-A7SV-01 5 40728504 40728504 T A TTC33 Silent p.S126S 0.09 TCGA-L9-A7SV-01 5 43245943 43245943 C A NIM1K Silent p.R22R 0.79 TCGA-L9-A7SV-01 5 44388667 44388667 G T FGF10 Missense_Mutation p.L40I 0.05 tolerated(0.37) benign(0.004) TCGA-L9-A7SV-01 5 45261936 45261936 G T HCN1 3'UTR 0.79 TCGA-L9-A7SV-01 5 45303935 45303935 C G HCN1 Missense_Mutation p.V462L 0.10 deleterious(0.01) probably_damaging(0.926) TCGA-L9-A7SV-01 5 45695840 45695840 G T HCN1 Missense_Mutation p.A119E 0.10 deleterious(0) probably_damaging(0.996) TCGA-L9-A7SV-01 5 465252 465252 C T EXOC3 Silent p.R601R 0.17 TCGA-L9-A7SV-01 5 56170924 56170924 C T MAP3K1 Silent p.L584L 0.46 TCGA-L9-A7SV-01 5 71495896 71495896 T A MAP1B Missense_Mutation p.D2238E 0.81 benign(0.422) TCGA-L9-A7SV-01 5 7706856 7706856 G T ADCY2 Splice_Site p.X370_splice 0.17 TCGA-L9-A7SV-01 5 7706866 7706866 G C ADCY2 Missense_Mutation p.R373S 0.19 deleterious(0) probably_damaging(0.985) TCGA-L9-A7SV-01 5 7831872 7831872 G A C5orf49 3'UTR 0.79 TCGA-L9-A7SV-01 5 78326774 78326774 T C DMGDH Missense_Mutation p.Y522C 0.26 tolerated(1) benign(0.004) TCGA-L9-A7SV-01 5 7875450 7875450 G T MTRR Silent p.R148R 0.10 TCGA-L9-A7SV-01 5 9054363 9054363 C A SEMA5A Missense_Mutation p.G842V 0.11 deleterious(0) probably_damaging(0.979) TCGA-L9-A7SV-01 5 9154695 9154695 C A SEMA5A Silent p.L462L 0.04 TCGA-L9-A7SV-01 5 9190424 9190424 C A SEMA5A Missense_Mutation p.V410L 0.10 tolerated(0.06) probably_damaging(0.998) TCGA-L9-A7SV-01 5 94814141 94814141 C A TTC37 Silent p.L1406L 0.73 TCGA-L9-A7SV-01 5 94834081 94834081 C A TTC37 Missense_Mutation p.V1186F 0.34 deleterious(0) possibly_damaging(0.846) TCGA-L9-A7SV-01 5 96460238 96460238 G T LIX1 Missense_Mutation p.P60T 0.82 deleterious(0.03) benign(0.168) TCGA-L9-A7SV-01 6 100841691 100841691 C T SIM1 Silent p.T414T 0.36 TCGA-L9-A7SV-01 6 102134111 102134111 G C GRIK2 Silent p.G278G 0.20 TCGA-L9-A7SV-01 6 108489342 108489342 C A NR2E1 Intron 0.56 TCGA-L9-A7SV-01 6 108843627 108843627 A T LACE1 Nonstop_Mutation p.*482Lext*7 0.38 TCGA-L9-A7SV-01 6 109850183 109850183 C A AK9 Intron 0.46 TCGA-L9-A7SV-01 6 10995404 10995404 T A ELOVL2 Missense_Mutation p.K114M 0.92 deleterious(0.01) possibly_damaging(0.843) TCGA-L9-A7SV-01 6 110550148 110550148 G T CDC40 Missense_Mutation p.A511S 0.28 tolerated(0.07) possibly_damaging(0.718) TCGA-L9-A7SV-01 6 111346624 111346624 A T RPF2 Missense_Mutation p.I254F 0.22 deleterious(0) benign(0.369) TCGA-L9-A7SV-01 6 111583497 111583498 - T KIAA1919 Frame_Shift_Ins p.L23Ffs*11 0.32 TCGA-L9-A7SV-01 6 112462089 112462089 G T LAMA4 Missense_Mutation p.P950Q 0.48 deleterious(0.01) probably_damaging(0.96) TCGA-L9-A7SV-01 6 117127728 117127728 A T GPRC6A Silent p.S380S 0.33 TCGA-L9-A7SV-01 6 117244364 117244364 C A RFX6 Missense_Mutation p.T511N 0.33 deleterious(0) probably_damaging(0.996) TCGA-L9-A7SV-01 6 126319441 126319441 G A TRMT11 Missense_Mutation p.E123K 0.35 tolerated(0.11) possibly_damaging(0.461) TCGA-L9-A7SV-01 6 131190813 131190813 C A EPB41L2 Missense_Mutation p.A833S 0.32 tolerated(0.6) benign(0.045) TCGA-L9-A7SV-01 6 132207812 132207812 A T ENPP1 Missense_Mutation p.D852V 0.28 deleterious(0) probably_damaging(0.936) TCGA-L9-A7SV-01 6 132694104 132694106 GTG TT MOXD1 Frame_Shift_Del p.H148Nfs*25 0.24 TCGA-L9-A7SV-01 6 133849867 133849867 A T EYA4 Missense_Mutation p.N615I 0.30 deleterious(0) possibly_damaging(0.772) TCGA-L9-A7SV-01 6 135250279 135250279 T C ALDH8A1 Silent p.V308V 0.50 TCGA-L9-A7SV-01 6 1395118 1395118 C A FOXF2 3'UTR 0.71 TCGA-L9-A7SV-01 6 139609681 139609681 G T TXLNB Missense_Mutation p.P119Q 0.46 deleterious(0.04) possibly_damaging(0.472) TCGA-L9-A7SV-01 6 142721659 142721659 C T GPR126 Silent p.Y535Y 0.60 TCGA-L9-A7SV-01 6 146256140 146256140 T A SHPRH Missense_Mutation p.R965W 0.36 deleterious(0) probably_damaging(0.995) TCGA-L9-A7SV-01 6 151671259 151671259 G A AKAP12 Missense_Mutation p.C578Y 0.38 deleterious(0.05) probably_damaging(0.938) TCGA-L9-A7SV-01 6 151790042 151790042 G T C6orf211 Missense_Mutation p.G375C 0.37 deleterious(0) probably_damaging(0.997) TCGA-L9-A7SV-01 6 154439842 154439842 G C OPRM1 Missense_Mutation p.A490P 0.42 deleterious_low_confidence(0.01) benign(0.26) TCGA-L9-A7SV-01 6 154743738 154743738 T A CNKSR3 Missense_Mutation p.T283S 0.40 tolerated(1) benign(0.004) TCGA-L9-A7SV-01 6 159653439 159653439 G T FNDC1 Missense_Mutation p.R632L 0.30 deleterious_low_confidence(0.02) unknown(0) TCGA-L9-A7SV-01 6 160241522 160241522 G T PNLDC1 Silent p.A512A 0.56 TCGA-L9-A7SV-01 6 160899703 160899703 T C LPAL2 RNA 0.27 TCGA-L9-A7SV-01 6 160968840 160968840 C T LPA Nonsense_Mutation p.W1762* 0.44 TCGA-L9-A7SV-01 6 161152823 161152823 C A PLG Silent p.T495T 0.32 TCGA-L9-A7SV-01 6 163483258 163483258 A G PACRG Missense_Mutation p.Y123C 0.44 tolerated(0.05) possibly_damaging(0.77) TCGA-L9-A7SV-01 6 165809932 165809932 C T PDE10A Missense_Mutation p.R432H 0.37 deleterious(0) probably_damaging(0.935) TCGA-L9-A7SV-01 6 165829744 165829744 C A PDE10A Missense_Mutation p.G342C 0.25 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 6 166580296 166580296 G T T Missense_Mutation p.N85K 0.36 deleterious(0.05) benign(0.308) TCGA-L9-A7SV-01 6 167787858 167787858 G T TCP10 Missense_Mutation p.P257Q 0.25 deleterious(0.01) benign(0.147) TCGA-L9-A7SV-01 6 169064760 169064760 G C SMOC2 Missense_Mutation p.R442T 0.26 tolerated_low_confidence(0.15) benign(0.131) TCGA-L9-A7SV-01 6 25420375 25420375 G T LRRC16A Missense_Mutation p.A58S 0.24 tolerated(0.14) benign(0.021) TCGA-L9-A7SV-01 6 26377178 26377178 G T BTN3A2 3'UTR 0.85 TCGA-L9-A7SV-01 6 26392872 26392872 T A BTN2A2 Missense_Mutation p.F417I 0.88 deleterious(0) probably_damaging(0.952) TCGA-L9-A7SV-01 6 28501858 28501858 C A GPX5 Missense_Mutation p.P194T 0.59 deleterious(0.01) probably_damaging(0.996) TCGA-L9-A7SV-01 6 29408244 29408244 G T OR10C1 Missense_Mutation p.G151V 0.62 deleterious(0.01) probably_damaging(1) TCGA-L9-A7SV-01 6 2948612 2948612 C A SERPINB6 Missense_Mutation p.A351S 0.98 deleterious(0) probably_damaging(0.998) TCGA-L9-A7SV-01 6 3106106 3106106 A G RIPK1 Missense_Mutation p.N466S 0.61 tolerated(0.44) benign(0.007) TCGA-L9-A7SV-01 6 31379726 31379726 C - MICA Frame_Shift_Del p.M208Wfs*2 0.42 TCGA-L9-A7SV-01 6 31541418 31541418 C A LTA Missense_Mutation p.P189H 0.24 tolerated(0.11) benign(0.002) TCGA-L9-A7SV-01 6 31550099 31550099 C A LTB Missense_Mutation p.L32F 0.60 deleterious(0.02) probably_damaging(0.952) TCGA-L9-A7SV-01 6 31855575 31855575 C A EHMT2 Missense_Mutation p.V637F 0.52 deleterious(0.02) possibly_damaging(0.701) TCGA-L9-A7SV-01 6 31996280 31996280 G T C4B Silent p.A1067A 0.58 TCGA-L9-A7SV-01 6 32726626 32726626 C A HLA-DQB2 Splice_Site p.X216_splice 0.89 TCGA-L9-A7SV-01 6 34730420 34730420 G T SNRPC Missense_Mutation p.V34L 0.87 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 6 38858510 38858510 G T DNAH8 Silent p.V2635V 0.92 TCGA-L9-A7SV-01 6 39046730 39046730 C A GLP1R Intron 0.26 TCGA-L9-A7SV-01 6 39843195 39843195 C G DAAM2 Missense_Mutation p.P418A 0.28 tolerated(0.05) probably_damaging(0.998) TCGA-L9-A7SV-01 6 41117408 41117408 G T TREML1 Missense_Mutation p.N290K 0.24 tolerated(0.15) benign(0) TCGA-L9-A7SV-01 6 42603153 42603154 AA T UBR2 Splice_Site p.X516_splice 0.30 TCGA-L9-A7SV-01 6 42823599 42823599 G T GLTSCR1L Missense_Mutation p.E684D 0.50 tolerated(1) benign(0) TCGA-L9-A7SV-01 6 43109950 43109950 G C PTK7 Missense_Mutation p.V662L 0.40 deleterious(0.02) probably_damaging(1) TCGA-L9-A7SV-01 6 43230653 43230653 T A TTBK1 Silent p.S517S 0.39 TCGA-L9-A7SV-01 6 43320126 43320126 T C ZNF318 Missense_Mutation p.H920R 0.52 benign(0.076) TCGA-L9-A7SV-01 6 44150909 44150909 G C CAPN11 Missense_Mutation p.D691H 0.44 tolerated(0.08) possibly_damaging(0.74) TCGA-L9-A7SV-01 6 46656537 46656537 C T TDRD6 Silent p.V224V 0.39 TCGA-L9-A7SV-01 6 46656999 46656999 G T TDRD6 Missense_Mutation p.L378F 0.35 deleterious(0) probably_damaging(0.996) TCGA-L9-A7SV-01 6 46977087 46977087 T C GPR110 Missense_Mutation p.Q695R 0.58 tolerated(0.62) benign(0.002) TCGA-L9-A7SV-01 6 46977088 46977088 G T GPR110 Missense_Mutation p.Q695K 0.58 tolerated(1) benign(0.02) TCGA-L9-A7SV-01 6 47680332 47680332 A G GPR115 Silent p.R180R 0.34 TCGA-L9-A7SV-01 6 49665576 49665576 G T CRISP2 Missense_Mutation p.P171H 0.34 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 6 49665577 49665577 G T CRISP2 Missense_Mutation p.P171T 0.35 deleterious(0) probably_damaging(0.992) TCGA-L9-A7SV-01 6 50683294 50683294 G T TFAP2D Missense_Mutation p.G169W 0.34 deleterious(0) possibly_damaging(0.486) TCGA-L9-A7SV-01 6 51524748 51524748 C A PKHD1 Missense_Mutation p.Q3392H 0.37 deleterious(0.03) possibly_damaging(0.825) TCGA-L9-A7SV-01 6 52761604 52761604 T A GSTA3 Nonstop_Mutation p.*223Yext*1 0.36 TCGA-L9-A7SV-01 6 52995636 52995636 C T GCM1 Missense_Mutation p.V179I 0.13 tolerated(0.1) benign(0.001) TCGA-L9-A7SV-01 6 5545480 5545480 C T FARS2 Silent p.Y324Y 0.19 TCGA-L9-A7SV-01 6 56470430 56470430 C A DST Intron 0.58 TCGA-L9-A7SV-01 6 56472702 56472702 C A DST Intron 0.11 TCGA-L9-A7SV-01 6 70071182 70071182 G A BAI3 Silent p.R1339R 0.51 TCGA-L9-A7SV-01 6 70992731 70992731 C A COL9A1 Intron 0.57 TCGA-L9-A7SV-01 6 7585694 7585694 G T DSP Silent p.T2733T 0.93 TCGA-L9-A7SV-01 6 76728473 76728473 G T IMPG1 Missense_Mutation p.P257T 0.44 tolerated(0.12) benign(0.21) TCGA-L9-A7SV-01 6 84270619 84270619 G T SNAP91 Silent p.A830A 0.43 TCGA-L9-A7SV-01 6 85446496 85446496 C T TBX18 Silent p.L577L 0.50 TCGA-L9-A7SV-01 6 90089934 90089934 C A RRAGD Missense_Mutation p.R199S 0.39 deleterious(0) possibly_damaging(0.588) TCGA-L9-A7SV-01 6 90424397 90424397 T C MDN1 Missense_Mutation p.I2312V 0.33 possibly_damaging(0.684) TCGA-L9-A7SV-01 6 90718370 90718370 G C BACH2 Missense_Mutation p.A65G 0.27 tolerated(0.53) benign(0.013) TCGA-L9-A7SV-01 6 97247454 97247454 C A GPR63 Missense_Mutation p.A52S 0.38 tolerated_low_confidence(0.63) benign(0.001) TCGA-L9-A7SV-01 7 100187504 100187504 G A FBXO24 Intron 0.20 TCGA-L9-A7SV-01 7 100421286 100421286 T C EPHB4 Missense_Mutation p.M131V 0.48 tolerated(0.24) probably_damaging(0.994) TCGA-L9-A7SV-01 7 100490810 100490810 G T ACHE Missense_Mutation p.N348K 0.40 tolerated(0.4) benign(0.241) TCGA-L9-A7SV-01 7 100683307 100683307 A T MUC17 Silent p.L2870L 0.39 TCGA-L9-A7SV-01 7 100816639 100816639 G T NAT16 Missense_Mutation p.L159I 0.38 deleterious(0.02) possibly_damaging(0.524) TCGA-L9-A7SV-01 7 103243833 103243833 T G RELN Missense_Mutation p.Q1084P 0.38 tolerated(0.31) possibly_damaging(0.71) TCGA-L9-A7SV-01 7 103281027 103281027 A C RELN Missense_Mutation p.C678G 0.32 deleterious(0.01) probably_damaging(0.993) TCGA-L9-A7SV-01 7 103338307 103338307 G T RELN Missense_Mutation p.T379K 0.37 deleterious(0.04) probably_damaging(0.991) TCGA-L9-A7SV-01 7 104377158 104377158 A C LHFPL3 Missense_Mutation p.D161A 0.25 tolerated(0.28) benign(0.311) TCGA-L9-A7SV-01 7 105903963 105903963 C A NAMPT Missense_Mutation p.D282Y 0.41 deleterious(0) probably_damaging(0.997) TCGA-L9-A7SV-01 7 105903964 105903964 A C NAMPT Nonsense_Mutation p.Y281* 0.42 TCGA-L9-A7SV-01 7 106545560 106545560 T C PIK3CG Missense_Mutation p.C1013R 0.37 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 7 107330585 107330585 G T SLC26A4 Missense_Mutation p.G389V 0.17 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 7 107580556 107580556 G A LAMB1 Silent p.I1213I 0.23 TCGA-L9-A7SV-01 7 107596005 107596005 C A LAMB1 Missense_Mutation p.D921Y 0.27 deleterious(0.01) probably_damaging(0.987) TCGA-L9-A7SV-01 7 107704271 107704271 T C LAMB4 Missense_Mutation p.Q999R 0.41 tolerated(0.23) benign(0.073) TCGA-L9-A7SV-01 7 107720050 107720050 G T LAMB4 Missense_Mutation p.T628N 0.21 deleterious(0.03) benign(0.248) TCGA-L9-A7SV-01 7 107752332 107752332 G T LAMB4 Silent p.P84P 0.39 TCGA-L9-A7SV-01 7 107824871 107824871 C A NRCAM Silent p.T741T 0.52 TCGA-L9-A7SV-01 7 107834476 107834476 A T NRCAM Missense_Mutation p.S590R 0.52 tolerated(0.36) benign(0.143) TCGA-L9-A7SV-01 7 110764721 110764721 C A LRRN3 Silent p.A631A 0.26 TCGA-L9-A7SV-01 7 112462224 112462224 C A C7orf60 Nonsense_Mutation p.E265* 0.38 TCGA-L9-A7SV-01 7 112723657 112723657 T C GPR85 3'UTR 0.18 TCGA-L9-A7SV-01 7 113522186 113522186 C A PPP1R3A Nonsense_Mutation p.E292* 0.29 TCGA-L9-A7SV-01 7 11445961 11445961 C A THSD7A Missense_Mutation p.M1401I 0.26 tolerated(0.66) benign(0.001) TCGA-L9-A7SV-01 7 117351760 117351760 C T CTTNBP2 Missense_Mutation p.R1608K 0.17 tolerated(0.12) benign(0.057) TCGA-L9-A7SV-01 7 119915466 119915466 T A KCND2 Missense_Mutation p.S260R 0.42 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 7 120381649 120381649 G T KCND2 Missense_Mutation p.S447I 0.25 tolerated(0.21) benign(0.222) TCGA-L9-A7SV-01 7 121941901 121941901 A T FEZF1 3'UTR 0.32 TCGA-L9-A7SV-01 7 122338886 122338886 C G RNF133 Missense_Mutation p.Q29H 0.42 tolerated(0.59) benign(0.003) TCGA-L9-A7SV-01 7 123269188 123269188 C T ASB15 Silent p.P380P 0.35 TCGA-L9-A7SV-01 7 126079098 126079098 G A GRM8 3'UTR 0.34 TCGA-L9-A7SV-01 7 127222900 127222900 G A GCC1 Missense_Mutation p.A499V 0.25 deleterious(0) probably_damaging(0.981) TCGA-L9-A7SV-01 7 1275531 1275531 C A UNCX Silent p.R172R 0.29 TCGA-L9-A7SV-01 7 128320124 128320124 C T FAM71F2 Missense_Mutation p.P219S 0.29 tolerated(1) benign(0) TCGA-L9-A7SV-01 7 129915024 129915024 G A CPA2 Silent p.L174L 0.26 TCGA-L9-A7SV-01 7 131172490 131172490 G T MKLN1 3'UTR 0.32 TCGA-L9-A7SV-01 7 131883312 131883312 G T PLXNA4 Silent p.I890I 0.44 TCGA-L9-A7SV-01 7 133812138 133812138 G T LRGUK Missense_Mutation p.R6S 0.41 tolerated_low_confidence(0.4) unknown(0) TCGA-L9-A7SV-01 7 134260625 134260625 C A AKR1B15 Missense_Mutation p.S230Y 0.37 deleterious(0.01) probably_damaging(0.952) TCGA-L9-A7SV-01 7 134889119 134889119 C A WDR91 Silent p.S264S 0.20 TCGA-L9-A7SV-01 7 134896282 134896282 G A WDR91 5'UTR 0.37 TCGA-L9-A7SV-01 7 135368920 135368920 G T SLC13A4 Silent p.P565P 0.34 TCGA-L9-A7SV-01 7 136588039 136588039 C G CHRM2 Intron 0.43 TCGA-L9-A7SV-01 7 136699603 136699603 A G CHRM2 5'UTR 0.40 TCGA-L9-A7SV-01 7 136700063 136700063 T C CHRM2 Missense_Mutation p.S151P 0.23 deleterious(0) possibly_damaging(0.859) TCGA-L9-A7SV-01 7 138862971 138862971 G T TTC26 Missense_Mutation p.G361W 0.25 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 7 138862981 138862981 G T TTC26 Missense_Mutation p.C364F 0.25 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 7 138968513 138968513 C T UBN2 Silent p.P954P 0.32 TCGA-L9-A7SV-01 7 139662033 139662033 G T TBXAS1 Splice_Site p.X425_splice 0.48 TCGA-L9-A7SV-01 7 139734086 139734087 - A PARP12 Frame_Shift_Ins p.C457Lfs*48 0.14 TCGA-L9-A7SV-01 7 141490167 141490167 G C TAS2R5 Silent p.L2L 0.27 TCGA-L9-A7SV-01 7 141705441 141705441 G A MGAM Silent p.E37E 0.57 TCGA-L9-A7SV-01 7 141721473 141721473 C A MGAM Missense_Mutation p.Q216K 0.39 tolerated(0.56) benign(0) TCGA-L9-A7SV-01 7 142001007 142001007 G A TRBV2 5'UTR 0.20 TCGA-L9-A7SV-01 7 142111564 142111564 G T TRBV5-7 Missense_Mutation p.L58M 0.26 tolerated(0.11) benign(0.383) TCGA-L9-A7SV-01 7 142119872 142119872 G T TRBV7-7 Missense_Mutation p.Q99K 0.21 tolerated(0.09) benign(0.107) TCGA-L9-A7SV-01 7 142131874 142131874 C A TRBV5-6 Missense_Mutation p.G2C 0.29 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 7 142162144 142162144 T A TRBV6-6 Missense_Mutation p.Q44L 0.21 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 7 142423394 142423394 G T TRBV27 Missense_Mutation p.G17V 0.43 TCGA-L9-A7SV-01 7 142448728 142448728 T G TRBV29-1 Missense_Mutation p.C108G 0.44 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 7 142564021 142564021 G T EPHB6 Missense_Mutation p.S470I 0.38 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 7 143701311 143701311 C A OR6B1 Silent p.I74I 0.39 TCGA-L9-A7SV-01 7 144098654 144098654 G T NOBOX Missense_Mutation p.P110H 0.42 tolerated_low_confidence(0.25) benign(0.005) TCGA-L9-A7SV-01 7 14517846 14517846 G T DGKB Missense_Mutation p.A593D 0.71 deleterious(0) probably_damaging(0.984) TCGA-L9-A7SV-01 7 146536993 146536993 C A CNTNAP2 Silent p.I133I 0.33 TCGA-L9-A7SV-01 7 148112618 148112618 G A CNTNAP2 Silent p.E1302E 0.20 TCGA-L9-A7SV-01 7 149493779 149493779 T A SSPO RNA 0.30 TCGA-L9-A7SV-01 7 150557537 150557537 A G AOC1 Intron 0.44 TCGA-L9-A7SV-01 7 150647421 150647421 C A KCNH2 Missense_Mutation p.G745W 0.19 deleterious(0) probably_damaging(0.992) TCGA-L9-A7SV-01 7 150695472 150695472 G T NOS3 Missense_Mutation p.A204S 0.27 deleterious(0) possibly_damaging(0.736) TCGA-L9-A7SV-01 7 154876222 154876222 G C HTR5A 3'UTR 0.41 TCGA-L9-A7SV-01 7 154876248 154876248 C A HTR5A 3'UTR 0.46 TCGA-L9-A7SV-01 7 155473476 155473476 G T RBM33 Missense_Mutation p.Q147H 0.16 tolerated(0.24) probably_damaging(0.953) TCGA-L9-A7SV-01 7 157369417 157369417 A T PTPRN2 Missense_Mutation p.Y891N 0.57 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 7 157387954 157387954 G T PTPRN2 Silent p.P824P 0.43 TCGA-L9-A7SV-01 7 157959841 157959841 G T PTPRN2 Missense_Mutation p.P231H 0.35 deleterious(0) possibly_damaging(0.753) TCGA-L9-A7SV-01 7 158557501 158557501 C G ESYT2 Missense_Mutation p.G371A 0.23 tolerated(0.6) benign(0.006) TCGA-L9-A7SV-01 7 18788672 18788672 G T HDAC9 Missense_Mutation p.G652C 0.15 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 7 20199721 20199721 C T MACC1 Missense_Mutation p.R88K 0.60 tolerated(1) benign(0) TCGA-L9-A7SV-01 7 20795049 20795049 G C ABCB5 Splice_Site p.X1193_splice 0.20 TCGA-L9-A7SV-01 7 21698433 21698433 G T DNAH11 Silent p.L1709L 0.47 TCGA-L9-A7SV-01 7 22852683 22852683 C A TOMM7 3'UTR 0.19 TCGA-L9-A7SV-01 7 23313751 23313751 G T GPNMB Missense_Mutation p.V543F 0.26 deleterious(0.03) benign(0.252) TCGA-L9-A7SV-01 7 25175564 25175564 T A C7orf31 3'UTR 0.69 TCGA-L9-A7SV-01 7 27832788 27832788 G C TAX1BP1 Missense_Mutation p.C456S 0.70 deleterious(0.03) probably_damaging(1) TCGA-L9-A7SV-01 7 30118248 30118248 G T PLEKHA8 Missense_Mutation p.A469S 0.59 deleterious(0.02) probably_damaging(1) TCGA-L9-A7SV-01 7 30915272 30915272 G T FAM188B Splice_Site p.X657_splice 0.26 TCGA-L9-A7SV-01 7 31732068 31732068 G T PPP1R17 Nonsense_Mutation p.E5* 0.42 TCGA-L9-A7SV-01 7 32110103 32110103 C G PDE1C Intron 0.28 TCGA-L9-A7SV-01 7 36571789 36571789 C T AOAH Missense_Mutation p.M463I 0.21 deleterious(0.01) benign(0.062) TCGA-L9-A7SV-01 7 4014096 4014096 G T SDK1 Missense_Mutation p.W638L 0.39 deleterious(0.03) possibly_damaging(0.506) TCGA-L9-A7SV-01 7 42004025 42004025 G T GLI3 Missense_Mutation p.A1549E 0.54 deleterious(0) benign(0.174) TCGA-L9-A7SV-01 7 42018227 42018227 G T GLI3 Missense_Mutation p.H540N 0.25 deleterious(0) probably_damaging(0.909) TCGA-L9-A7SV-01 7 42187903 42187903 C G GLI3 Missense_Mutation p.V97L 0.25 tolerated_low_confidence(1) benign(0) TCGA-L9-A7SV-01 7 43916856 43916856 C A URGCP Missense_Mutation p.A736S 0.22 tolerated(0.45) possibly_damaging(0.661) TCGA-L9-A7SV-01 7 44147283 44147283 G A AEBP1 Silent p.R241R 0.74 TCGA-L9-A7SV-01 7 45726212 45726212 G T ADCY1 Silent p.L798L 0.69 TCGA-L9-A7SV-01 7 47342696 47342696 C A TNS3 Silent p.R1103R 0.21 TCGA-L9-A7SV-01 7 48684324 48684324 T A ABCA13 Missense_Mutation p.S5019T 0.65 benign(0.022) TCGA-L9-A7SV-01 7 50097705 50097705 C A ZPBP Nonsense_Mutation p.G123* 0.38 TCGA-L9-A7SV-01 7 53103573 53103573 G T POM121L12 Missense_Mutation p.R70L 0.13 deleterious(0.01) possibly_damaging(0.858) TCGA-L9-A7SV-01 7 5540809 5540809 C A FBXL18 Missense_Mutation p.R364L 0.82 deleterious(0) possibly_damaging(0.617) TCGA-L9-A7SV-01 7 57193746 57193746 C A ZNF479 Nonsense_Mutation p.E81* 0.44 TCGA-L9-A7SV-01 7 57528977 57528977 A T ZNF716 Silent p.T270T 0.50 TCGA-L9-A7SV-01 7 57528979 57528979 G T ZNF716 Missense_Mutation p.C271F 0.51 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 7 5920536 5920536 G A OCM Missense_Mutation p.V6M 0.18 tolerated(0.12) benign(0.001) TCGA-L9-A7SV-01 7 64292558 64292558 G T ZNF138 Missense_Mutation p.G287V 0.55 deleterious(0) probably_damaging(0.979) TCGA-L9-A7SV-01 7 65557918 65557918 C G ASL 3'UTR 0.27 TCGA-L9-A7SV-01 7 71175863 71175863 G T WBSCR17 Missense_Mutation p.D540Y 0.18 deleterious(0.04) benign(0.346) TCGA-L9-A7SV-01 7 72413711 72413711 C A POM121 Missense_Mutation p.S795Y 0.44 deleterious(0) possibly_damaging(0.739) TCGA-L9-A7SV-01 7 80301303 80301303 G A CD36 Missense_Mutation p.D358N 0.26 tolerated(0.19) benign(0.102) TCGA-L9-A7SV-01 7 81588658 81588658 G A CACNA2D1 Missense_Mutation p.P1031L 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-L9-A7SV-01 7 81624239 81624239 A T CACNA2D1 Missense_Mutation p.I560N 0.16 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 7 82390749 82390749 C A PCLO Missense_Mutation p.G5023V 0.44 unknown(0) TCGA-L9-A7SV-01 7 82390750 82390750 C A PCLO Missense_Mutation p.G5023C 0.44 unknown(0) TCGA-L9-A7SV-01 7 82578956 82578956 C G PCLO Missense_Mutation p.D3650H 0.30 unknown(0) TCGA-L9-A7SV-01 7 82580115 82580115 C A PCLO Missense_Mutation p.M3263I 0.27 unknown(0) TCGA-L9-A7SV-01 7 87175275 87175275 G T ABCB1 Silent p.V597V 0.51 TCGA-L9-A7SV-01 7 87774734 87774734 G T ADAM22 Missense_Mutation p.C466F 0.23 deleterious(0.01) probably_damaging(1) TCGA-L9-A7SV-01 7 90741907 90741907 G C CDK14 Missense_Mutation p.C384S 0.39 tolerated(0.34) possibly_damaging(0.635) TCGA-L9-A7SV-01 7 90895112 90895112 A G FZD1 Missense_Mutation p.Y306C 0.38 tolerated(0.18) possibly_damaging(0.593) TCGA-L9-A7SV-01 7 92027877 92027877 G T ANKIB1 Missense_Mutation p.D962Y 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.51) TCGA-L9-A7SV-01 7 92734879 92734879 C T SAMD9 Missense_Mutation p.D178N 0.15 tolerated(0.96) benign(0) TCGA-L9-A7SV-01 7 92761675 92761675 C G SAMD9L Missense_Mutation p.G1204R 0.27 deleterious(0.01) probably_damaging(0.913) TCGA-L9-A7SV-01 7 93108740 93108740 C A CALCR Missense_Mutation p.G62V 0.21 tolerated(0.11) probably_damaging(0.959) TCGA-L9-A7SV-01 7 94989374 94989374 C A PON3 Missense_Mutation p.V326L 0.31 tolerated(0.1) probably_damaging(0.966) TCGA-L9-A7SV-01 7 95221883 95221883 C A PDK4 Nonsense_Mutation p.G186* 0.31 TCGA-L9-A7SV-01 7 95662084 95662084 A G DYNC1I1 Missense_Mutation p.T425A 0.26 tolerated(0.07) benign(0.003) TCGA-L9-A7SV-01 7 96637090 96637090 G T DLX6 Missense_Mutation p.A193S 0.21 deleterious(0.01) possibly_damaging(0.727) TCGA-L9-A7SV-01 7 97823414 97823414 G A LMTK2 Missense_Mutation p.D1213N 0.13 tolerated(0.06) benign(0.022) TCGA-L9-A7SV-01 7 98592371 98592371 G T TRRAP Silent p.S3389S 0.55 TCGA-L9-A7SV-01 7 99627563 99627563 A T ZKSCAN1 Silent p.T220T 0.30 TCGA-L9-A7SV-01 7 99758434 99758434 C G GAL3ST4 Missense_Mutation p.R193P 0.30 tolerated(0.2) possibly_damaging(0.8) TCGA-L9-A7SV-01 8 100168909 100168909 A T VPS13B Missense_Mutation p.S716C 0.25 deleterious(0) probably_damaging(0.971) TCGA-L9-A7SV-01 8 101059721 101059721 C A RGS22 Missense_Mutation p.G598V 0.15 tolerated(0.64) benign(0.001) TCGA-L9-A7SV-01 8 101075826 101075826 C G RGS22 Missense_Mutation p.E390D 0.22 tolerated(0.18) benign(0.033) TCGA-L9-A7SV-01 8 10469675 10469675 C A RP1L1 Missense_Mutation p.A645S 0.82 benign(0.241) TCGA-L9-A7SV-01 8 10480323 10480323 C A RP1L1 Missense_Mutation p.R130L 0.93 benign(0.1) TCGA-L9-A7SV-01 8 104831715 104831715 G T RIMS2 Intron 0.37 TCGA-L9-A7SV-01 8 105503425 105503425 C A LRP12 Nonsense_Mutation p.E686* 0.47 TCGA-L9-A7SV-01 8 10623173 10623173 C T PINX1 Missense_Mutation p.R242K 0.80 tolerated(0.46) benign(0.001) TCGA-L9-A7SV-01 8 106813286 106813286 G A ZFPM2 Missense_Mutation p.E326K 0.16 deleterious(0.01) probably_damaging(0.917) TCGA-L9-A7SV-01 8 106814631 106814631 A T ZFPM2 Missense_Mutation p.Q774L 0.43 tolerated(0.2) possibly_damaging(0.663) TCGA-L9-A7SV-01 8 106814942 106814942 C A ZFPM2 Missense_Mutation p.P878T 0.18 deleterious(0) probably_damaging(0.975) TCGA-L9-A7SV-01 8 106814943 106814943 C A ZFPM2 Missense_Mutation p.P878Q 0.18 deleterious(0.02) possibly_damaging(0.863) TCGA-L9-A7SV-01 8 109094837 109094837 G T RSPO2 Silent p.L10L 0.32 TCGA-L9-A7SV-01 8 110355660 110355660 G C ENY2 Missense_Mutation p.E86Q 0.65 deleterious(0) probably_damaging(0.979) TCGA-L9-A7SV-01 8 110432848 110432848 C A PKHD1L1 Missense_Mutation p.Q876K 0.22 tolerated(0.32) benign(0.032) TCGA-L9-A7SV-01 8 110509423 110509423 T C PKHD1L1 Silent p.N3507N 0.21 TCGA-L9-A7SV-01 8 113277719 113277719 G T CSMD3 Nonsense_Mutation p.Y3203* 0.39 TCGA-L9-A7SV-01 8 113299343 113299343 C A CSMD3 Missense_Mutation p.R3094I 0.62 tolerated(0.07) probably_damaging(0.968) TCGA-L9-A7SV-01 8 113421196 113421196 G T CSMD3 Missense_Mutation p.P1821T 0.15 tolerated(0.33) possibly_damaging(0.648) TCGA-L9-A7SV-01 8 113649083 113649083 G T CSMD3 Silent p.G1226G 0.39 TCGA-L9-A7SV-01 8 114186066 114186066 G T CSMD3 Missense_Mutation p.D198E 0.23 deleterious(0.03) benign(0.071) TCGA-L9-A7SV-01 8 116632121 116632121 A T TRPS1 Missense_Mutation p.N68K 0.12 deleterious_low_confidence(0.01) benign(0.046) TCGA-L9-A7SV-01 8 120430298 120430298 C G NOV Missense_Mutation p.A104G 0.08 deleterious(0.01) benign(0.006) TCGA-L9-A7SV-01 8 121267591 121267591 C G COL14A1 Silent p.L955L 0.29 TCGA-L9-A7SV-01 8 121322278 121322278 C A COL14A1 Missense_Mutation p.Q1478K 0.57 tolerated(0.05) possibly_damaging(0.525) TCGA-L9-A7SV-01 8 121379457 121379457 C A COL14A1 Missense_Mutation p.Q1709K 0.17 tolerated(0.2) probably_damaging(0.966) TCGA-L9-A7SV-01 8 121522221 121522221 A T MTBP Missense_Mutation p.Q644L 0.59 deleterious(0.02) benign(0.008) TCGA-L9-A7SV-01 8 122626968 122626968 C A HAS2 Missense_Mutation p.W347L 0.14 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 8 124553288 124553288 G A FBXO32 5'UTR 0.25 TCGA-L9-A7SV-01 8 124810341 124810341 G T FAM91A1 Missense_Mutation p.D475Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 8 127568982 127568982 C A FAM84B Missense_Mutation p.G218V 0.52 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 8 131193082 131193082 C A ASAP1 Missense_Mutation p.G192V 0.54 deleterious(0) probably_damaging(0.994) TCGA-L9-A7SV-01 8 133196585 133196585 G T KCNQ3 Silent p.A169A 0.26 TCGA-L9-A7SV-01 8 134262742 134262742 C A NDRG1 Missense_Mutation p.Q213H 0.26 tolerated(0.55) benign(0.007) TCGA-L9-A7SV-01 8 139323083 139323083 C A FAM135B Splice_Site p.X53_splice 0.51 TCGA-L9-A7SV-01 8 139323119 139323119 G T FAM135B Missense_Mutation p.P41H 0.34 deleterious(0) probably_damaging(0.997) TCGA-L9-A7SV-01 8 139767453 139767453 C A COL22A1 Nonsense_Mutation p.G660* 0.59 TCGA-L9-A7SV-01 8 143425729 143425729 C A TSNARE1 Missense_Mutation p.G115W 0.50 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-L9-A7SV-01 8 144994340 144994340 C G PLEC Missense_Mutation p.A3354P 0.09 benign(0.082) TCGA-L9-A7SV-01 8 145095281 145095281 G A SPATC1 Missense_Mutation p.R228K 0.74 tolerated_low_confidence(0.12) possibly_damaging(0.513) TCGA-L9-A7SV-01 8 145106707 145106707 C A OPLAH Missense_Mutation p.G1215C 0.27 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 8 145661149 145661149 C G TONSL Silent p.A889A 0.22 TCGA-L9-A7SV-01 8 1497030 1497030 G T DLGAP2 Silent p.P57P 0.67 TCGA-L9-A7SV-01 8 17133938 17133938 A T VPS37A Silent p.P225P 0.62 TCGA-L9-A7SV-01 8 21964963 21964963 C A NUDT18 Missense_Mutation p.V274L 0.67 tolerated(0.29) benign(0.159) TCGA-L9-A7SV-01 8 24365048 24365048 G A ADAM7 Silent p.%3D 0.72 TCGA-L9-A7SV-01 8 27312093 27312093 C A PTK2B Missense_Mutation p.L927I 1.00 tolerated(1) benign(0.003) TCGA-L9-A7SV-01 8 27362537 27362537 C A EPHX2 Silent p.A137A 0.94 TCGA-L9-A7SV-01 8 2967854 2967854 G T CSMD1 Missense_Mutation p.P2145H 1.00 probably_damaging(1) TCGA-L9-A7SV-01 8 3063086 3063086 G T CSMD1 Missense_Mutation p.P1642T 0.73 probably_damaging(1) TCGA-L9-A7SV-01 8 33319024 33319024 C A FUT10 5'UTR 0.87 TCGA-L9-A7SV-01 8 38934810 38934810 G T ADAM9 Silent p.V587V 0.34 TCGA-L9-A7SV-01 8 42038061 42038061 G T PLAT Silent p.G344G 0.20 TCGA-L9-A7SV-01 8 48743264 48743264 C A PRKDC Missense_Mutation p.A2766S 0.86 benign(0.17) TCGA-L9-A7SV-01 8 51314880 51314880 G T SNTG1 Silent p.V46V 0.48 TCGA-L9-A7SV-01 8 54708363 54708363 C A ATP6V1H Missense_Mutation p.Q238H 0.27 deleterious(0) probably_damaging(0.954) TCGA-L9-A7SV-01 8 57025849 57025849 G T MOS Nonsense_Mutation p.C231* 0.33 TCGA-L9-A7SV-01 8 67089255 67089255 C A CRH Missense_Mutation p.R153L 0.91 deleterious(0) possibly_damaging(0.884) TCGA-L9-A7SV-01 8 67925333 67925333 T G PPP1R42 Splice_Site p.X99_splice 0.87 TCGA-L9-A7SV-01 8 6794322 6794322 G T DEFA4 Missense_Mutation p.Q34K 0.68 deleterious(0.01) probably_damaging(0.936) TCGA-L9-A7SV-01 8 68074067 68074067 A G CSPP1 Missense_Mutation p.I849V 0.60 tolerated(1) benign(0) TCGA-L9-A7SV-01 8 74005091 74005091 G T SBSPON Missense_Mutation p.P71Q 0.58 deleterious(0) probably_damaging(0.984) TCGA-L9-A7SV-01 8 85774568 85774568 C G RALYL Missense_Mutation p.R164G 0.19 deleterious(0.01) benign(0.171) TCGA-L9-A7SV-01 8 87076515 87076515 C A PSKH2 Silent p.L177L 0.10 TCGA-L9-A7SV-01 8 88365941 88365941 A T CNBD1 Missense_Mutation p.Q410H 0.13 deleterious(0.03) benign(0.139) TCGA-L9-A7SV-01 8 88885062 88885062 C A DCAF4L2 Missense_Mutation p.G380W 0.19 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 8 89053684 89053684 C G MMP16 3'UTR 0.26 TCGA-L9-A7SV-01 8 92008959 92008959 T A TMEM55A Missense_Mutation p.S185C 0.60 tolerated(0.11) benign(0.007) TCGA-L9-A7SV-01 8 92999144 92999144 A T RUNX1T1 Missense_Mutation p.W361R 0.19 deleterious(0) possibly_damaging(0.873) TCGA-L9-A7SV-01 8 95531475 95531475 C A KIAA1429 Missense_Mutation p.G751C 0.14 deleterious(0.03) probably_damaging(0.981) TCGA-L9-A7SV-01 8 96166798 96166798 C T PLEKHF2 Missense_Mutation p.R176C 0.23 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 8 97797117 97797117 G A CPQ 5'UTR 0.61 TCGA-L9-A7SV-01 8 97797456 97797456 C T CPQ Missense_Mutation p.P111S 0.22 deleterious(0.04) benign(0.252) TCGA-L9-A7SV-01 8 99170563 99170563 G T POP1 3'UTR 0.43 TCGA-L9-A7SV-01 9 100693265 100693265 G T HEMGN Missense_Mutation p.Q138K 0.32 tolerated(0.06) benign(0.003) TCGA-L9-A7SV-01 9 101817620 101817620 G C COL15A1 Missense_Mutation p.G1053A 0.17 tolerated(0.08) probably_damaging(0.992) TCGA-L9-A7SV-01 9 103338944 103338944 G A TMEFF1 3'UTR 0.63 TCGA-L9-A7SV-01 9 104357285 104357285 G T GRIN3A Intron 0.35 TCGA-L9-A7SV-01 9 104375759 104375759 C A GRIN3A Nonsense_Mutation p.E889* 0.14 TCGA-L9-A7SV-01 9 105765490 105765490 G C CYLC2 Missense_Mutation p.R42P 0.27 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 9 107289255 107289255 G T OR13C4 Missense_Mutation p.P79H 0.24 deleterious(0) possibly_damaging(0.895) TCGA-L9-A7SV-01 9 111679912 111679912 G C IKBKAP Missense_Mutation p.P260R 0.22 deleterious(0) probably_damaging(0.987) TCGA-L9-A7SV-01 9 111849479 111849479 T A TMEM245 Nonsense_Mutation p.K432* 0.28 TCGA-L9-A7SV-01 9 116269720 116269720 G T RGS3 Silent p.G413G 0.48 TCGA-L9-A7SV-01 9 119976808 119976808 C A ASTN2 Missense_Mutation p.V282L 0.18 tolerated_low_confidence(1) unknown(0) TCGA-L9-A7SV-01 9 119976852 119976852 C T ASTN2 Missense_Mutation p.S267N 0.47 deleterious_low_confidence(0.01) unknown(0) TCGA-L9-A7SV-01 9 120476501 120476501 G T TLR4 Missense_Mutation p.G699W 0.47 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 9 123202029 123202029 C T CDK5RAP2 Missense_Mutation p.E1124K 0.25 deleterious(0.05) benign(0.004) TCGA-L9-A7SV-01 9 123249605 123249605 T C CDK5RAP2 Silent p.Q531Q 0.27 TCGA-L9-A7SV-01 9 123676548 123676548 C A TRAF1 Missense_Mutation p.G87W 0.14 tolerated(0.06) possibly_damaging(0.599) TCGA-L9-A7SV-01 9 125239834 125239834 C A OR1J1 Silent p.V124V 0.34 TCGA-L9-A7SV-01 9 125438219 125438219 C A OR1L3 Silent p.R271R 0.20 TCGA-L9-A7SV-01 9 125562562 125562562 C A OR1K1 Missense_Mutation p.P54Q 0.57 deleterious(0.03) benign(0.147) TCGA-L9-A7SV-01 9 125582314 125582314 C A PDCL 3'UTR 0.53 TCGA-L9-A7SV-01 9 125616469 125616469 G T RC3H2 Missense_Mutation p.Q993K 0.57 deleterious(0.02) possibly_damaging(0.824) TCGA-L9-A7SV-01 9 127781160 127781160 C A SCAI Missense_Mutation p.G283V 0.23 tolerated(0.11) benign(0.027) TCGA-L9-A7SV-01 9 130473638 130473638 A G C9orf117 Missense_Mutation p.R240G 0.40 deleterious(0) benign(0.292) TCGA-L9-A7SV-01 9 130980565 130980565 C A DNM1 Missense_Mutation p.L73M 0.31 deleterious(0.01) probably_damaging(1) TCGA-L9-A7SV-01 9 131008770 131008770 A C DNM1 Missense_Mutation p.N590T 0.37 tolerated(0.08) possibly_damaging(0.691) TCGA-L9-A7SV-01 9 131403161 131403161 G A WDR34 Missense_Mutation p.H82Y 0.28 tolerated(0.75) benign(0.009) TCGA-L9-A7SV-01 9 132381836 132381836 C A C9orf50 Missense_Mutation p.D227Y 0.55 deleterious(0) benign(0.191) TCGA-L9-A7SV-01 9 132662336 132662336 A G FNBP1 Missense_Mutation p.M532T 0.29 tolerated(0.53) benign(0) TCGA-L9-A7SV-01 9 133495827 133495827 G - FUBP3 Frame_Shift_Del p.G252Efs*5 0.20 TCGA-L9-A7SV-01 9 133507639 133507639 G C FUBP3 Missense_Mutation p.W495S 0.22 deleterious(0.01) probably_damaging(0.937) TCGA-L9-A7SV-01 9 133577570 133577570 A T EXOSC2 Missense_Mutation p.Q182L 0.24 tolerated(0.19) benign(0.019) TCGA-L9-A7SV-01 9 135102236 135102236 G T NTNG2 Missense_Mutation p.R286S 0.27 deleterious(0.03) benign(0.059) TCGA-L9-A7SV-01 9 137772729 137772729 G C FCN2 Missense_Mutation p.G21A 0.56 tolerated(0.6) benign(0.001) TCGA-L9-A7SV-01 9 139281990 139281990 C A SNAPC4 Missense_Mutation p.W424C 0.49 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 9 139342099 139342099 G A SEC16A Missense_Mutation p.P2161S 0.40 deleterious(0) probably_damaging(0.992) TCGA-L9-A7SV-01 9 139744522 139744522 G T PHPT1 Missense_Mutation p.C73F 0.35 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 9 140438210 140438210 T C PNPLA7 Missense_Mutation p.R111G 0.23 deleterious(0.01) benign(0.072) TCGA-L9-A7SV-01 9 140611392 140611392 G T EHMT1 Missense_Mutation p.A134S 0.24 tolerated_low_confidence(0.44) benign(0) TCGA-L9-A7SV-01 9 15744331 15744331 G A CCDC171 Missense_Mutation p.E704K 0.37 deleterious(0.01) benign(0.423) TCGA-L9-A7SV-01 9 19102592 19102592 C A HAUS6 Missense_Mutation p.A20S 0.26 deleterious(0.01) possibly_damaging(0.846) TCGA-L9-A7SV-01 9 20778689 20778689 G T FOCAD Missense_Mutation p.V306F 0.25 tolerated(0.45) benign(0.004) TCGA-L9-A7SV-01 9 21334475 21334475 A C KLHL9 Silent p.A128A 0.49 TCGA-L9-A7SV-01 9 21367446 21367446 C A IFNA13 Missense_Mutation p.R188S 0.14 tolerated(0.7) benign(0.004) TCGA-L9-A7SV-01 9 21367447 21367447 C A IFNA13 Missense_Mutation p.R188M 0.15 tolerated(0.11) benign(0.063) TCGA-L9-A7SV-01 9 21409360 21409360 C T IFNA8 Missense_Mutation p.P62L 0.41 deleterious(0) possibly_damaging(0.892) TCGA-L9-A7SV-01 9 21441066 21441066 G T IFNA1 Missense_Mutation p.R187M 0.20 tolerated(0.11) benign(0.063) TCGA-L9-A7SV-01 9 21441067 21441067 G T IFNA1 Missense_Mutation p.R187S 0.20 tolerated(0.72) benign(0.004) TCGA-L9-A7SV-01 9 21481348 21481348 G T IFNE Missense_Mutation p.Q116K 0.36 deleterious(0.01) possibly_damaging(0.686) TCGA-L9-A7SV-01 9 215376 215376 G C C9orf66 Silent p.R7R 0.36 TCGA-L9-A7SV-01 9 22823356 22823356 G T RP11-399D6.2 RNA 0.32 TCGA-L9-A7SV-01 9 26935113 26935113 G C PLAA Missense_Mutation p.P81A 0.41 tolerated(0.1) possibly_damaging(0.836) TCGA-L9-A7SV-01 9 27169485 27169485 C A TEK Silent p.I162I 0.41 TCGA-L9-A7SV-01 9 27949488 27949488 C A LINGO2 Missense_Mutation p.K394N 0.40 tolerated(0.11) benign(0.117) TCGA-L9-A7SV-01 9 3257186 3257186 C A RFX3 Missense_Mutation p.W540L 0.39 deleterious(0) probably_damaging(0.926) TCGA-L9-A7SV-01 9 32784601 32784601 C A TMEM215 Silent p.P140P 0.43 TCGA-L9-A7SV-01 9 34513163 34513163 G T DNAI1 Missense_Mutation p.G515C 0.36 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 9 34557671 34557671 C A CNTFR Missense_Mutation p.V153F 0.38 tolerated(0.68) benign(0.101) TCGA-L9-A7SV-01 9 34614102 34614102 T C DCTN3 Intron 0.38 TCGA-L9-A7SV-01 9 35677844 35677844 G T CA9 Missense_Mutation p.A300S 0.36 tolerated(0.77) benign(0.172) TCGA-L9-A7SV-01 9 35750663 35750663 G T RGP1 Missense_Mutation p.G88C 0.31 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 9 39361218 39361218 A T SPATA31A1 Silent p.P1152P 0.41 TCGA-L9-A7SV-01 9 43627403 43627403 C A SPATA31A6 Silent p.V428V 0.35 TCGA-L9-A7SV-01 9 43627621 43627621 G T SPATA31A6 Missense_Mutation p.P356T 0.11 tolerated(0.22) benign(0.27) TCGA-L9-A7SV-01 9 6981062 6981062 C T KDM4C Silent p.T353T 0.33 TCGA-L9-A7SV-01 9 70177168 70177168 C A FOXD4L5 Silent p.L272L 0.12 TCGA-L9-A7SV-01 9 70177169 70177169 A G FOXD4L5 Missense_Mutation p.L272P 0.12 deleterious(0.03) probably_damaging(0.979) TCGA-L9-A7SV-01 9 74975669 74975669 G A ZFAND5 Missense_Mutation p.P9L 0.29 deleterious(0.04) benign(0.008) TCGA-L9-A7SV-01 9 75357412 75357412 C G TMC1 Missense_Mutation p.P169R 0.24 deleterious(0) probably_damaging(0.999) TCGA-L9-A7SV-01 9 75407169 75407169 C A TMC1 Silent p.A489A 0.21 TCGA-L9-A7SV-01 9 78794552 78794552 G C PCSK5 Silent p.G647G 0.24 TCGA-L9-A7SV-01 9 79007414 79007414 T A RFK Missense_Mutation p.S52C 0.32 tolerated(0.34) benign(0.035) TCGA-L9-A7SV-01 9 79252446 79252446 C A PRUNE2 Nonsense_Mutation p.E2951* 0.23 TCGA-L9-A7SV-01 9 79270342 79270342 G T PRUNE2 Missense_Mutation p.P2785T 0.35 deleterious(0) probably_damaging(0.998) TCGA-L9-A7SV-01 9 79325448 79325448 G C PRUNE2 Missense_Mutation p.S581C 0.28 tolerated(0.4) benign(0.09) TCGA-L9-A7SV-01 9 79973271 79973271 A G VPS13A Splice_Site p.X2652_splice 0.20 TCGA-L9-A7SV-01 9 82333808 82333808 G C TLE4 Silent p.T504T 0.53 TCGA-L9-A7SV-01 9 84532090 84532090 A G SPATA31D5P RNA 0.21 TCGA-L9-A7SV-01 9 84562539 84562539 G C RP11-383M4.6 Intron 0.37 TCGA-L9-A7SV-01 9 8465628 8465628 T A PTPRD Missense_Mutation p.R1184S 0.70 tolerated(0.08) probably_damaging(0.979) TCGA-L9-A7SV-01 9 86895754 86895754 G T SLC28A3 Missense_Mutation p.A564D 0.52 deleterious(0) probably_damaging(0.939) TCGA-L9-A7SV-01 9 88590067 88590067 G T NAA35 Missense_Mutation p.V208L 0.18 tolerated(0.32) benign(0.015) TCGA-L9-A7SV-01 9 94486418 94486418 G C ROR2 Nonsense_Mutation p.Y786* 0.29 TCGA-L9-A7SV-01 9 95086476 95086476 T C NOL8 5'UTR 0.32 TCGA-L9-A7SV-01 9 96024977 96024977 C A WNK2 Missense_Mutation p.P1129H 0.79 unknown(0) TCGA-L9-A7SV-01 9 97087907 97087907 C A NUTM2F Missense_Mutation p.W109L 0.19 deleterious(0) probably_damaging(0.998) TCGA-L9-A7SV-01 9 990261 990261 G T DMRT3 Silent p.A225A 0.36 TCGA-L9-A7SV-01 9 99694189 99694189 C A NUTM2G Missense_Mutation p.Q68K 0.32 tolerated(0.13) possibly_damaging(0.831) TCGA-L9-A7SV-01 X 106186415 106186415 C T MORC4 Missense_Mutation p.G569D 0.40 tolerated(0.34) benign(0.091) TCGA-L9-A7SV-01 X 107434764 107434764 C A COL4A6 Splice_Site p.X395_splice 0.93 TCGA-L9-A7SV-01 X 107976416 107976416 C A IRS4 Missense_Mutation p.E1053D 0.44 deleterious_low_confidence(0.01) unknown(0) TCGA-L9-A7SV-01 X 109696473 109696473 G T RGAG1 Missense_Mutation p.M876I 0.40 tolerated(0.16) benign(0.007) TCGA-L9-A7SV-01 X 109696761 109696761 T C RGAG1 Silent p.S972S 0.36 TCGA-L9-A7SV-01 X 109697237 109697237 C A RGAG1 Missense_Mutation p.A1131E 0.45 tolerated_low_confidence(0.79) benign(0.052) TCGA-L9-A7SV-01 X 110496428 110496428 T G CAPN6 Missense_Mutation p.K105T 0.44 tolerated(0.11) benign(0.051) TCGA-L9-A7SV-01 X 111090380 111090380 C A TRPC5 Missense_Mutation p.K554N 0.55 tolerated(0.24) probably_damaging(0.944) TCGA-L9-A7SV-01 X 111874535 111874535 G T LHFPL1 3'UTR 0.38 TCGA-L9-A7SV-01 X 120008927 120008927 C A CT47B1 Missense_Mutation p.A200S 0.35 tolerated(0.36) unknown(0) TCGA-L9-A7SV-01 X 120182418 120182418 G A GLUD2 Missense_Mutation p.G294R 0.37 deleterious(0) probably_damaging(0.95) TCGA-L9-A7SV-01 X 125299265 125299265 C A DCAF12L2 Missense_Mutation p.G215C 0.80 deleterious(0) probably_damaging(1) TCGA-L9-A7SV-01 X 125686504 125686504 C G DCAF12L1 Missense_Mutation p.A30P 0.88 tolerated(0.07) benign(0.004) TCGA-L9-A7SV-01 X 12938303 12938303 C G TLR8 Missense_Mutation p.L382V 0.67 tolerated(0.09) benign(0.144) TCGA-L9-A7SV-01 X 130415307 130415307 G C IGSF1 Missense_Mutation p.L511V 0.60 tolerated(0.31) benign(0.008) TCGA-L9-A7SV-01 X 132160018 132160018 C A USP26 Missense_Mutation p.G744V 0.81 tolerated(0.23) benign(0.305) TCGA-L9-A7SV-01 X 133551320 133551320 G T PHF6 Missense_Mutation p.R319L 0.19 deleterious(0.02) possibly_damaging(0.89) TCGA-L9-A7SV-01 X 135738578 135738578 G T CD40LG Splice_Site p.X137_splice 0.92 TCGA-L9-A7SV-01 X 135956205 135956205 A C RBMX 3'UTR 0.32 TCGA-L9-A7SV-01 X 140993687 140993687 C T MAGEC1 Missense_Mutation p.P166L 0.15 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-L9-A7SV-01 X 144906014 144906014 C A SLITRK2 Missense_Mutation p.P691T 0.31 deleterious(0.01) benign(0.391) TCGA-L9-A7SV-01 X 147062981 147062981 G C FMR1NB Missense_Mutation p.R20P 0.41 tolerated(0.05) benign(0.057) TCGA-L9-A7SV-01 X 148664772 148664772 C A MAGEA9B Missense_Mutation p.D22Y 0.13 deleterious(0.01) benign(0.37) TCGA-L9-A7SV-01 X 148796146 148796146 C A MAGEA11 Missense_Mutation p.S34R 0.38 tolerated_low_confidence(0.62) benign(0) TCGA-L9-A7SV-01 X 148797870 148797870 C A MAGEA11 Missense_Mutation p.L242M 0.40 deleterious(0.01) benign(0.081) TCGA-L9-A7SV-01 X 149013886 149013886 C A MAGEA8 Silent p.A280A 0.48 TCGA-L9-A7SV-01 X 149809820 149809820 G T MTM1 Missense_Mutation p.V203L 0.48 deleterious(0.01) benign(0.036) TCGA-L9-A7SV-01 X 150912770 150912770 G T CNGA2 Nonsense_Mutation p.E599* 0.40 TCGA-L9-A7SV-01 X 151900752 151900752 C A MAGEA12 Nonsense_Mutation p.E17* 0.89 TCGA-L9-A7SV-01 X 19935378 19935378 C G CXorf23 3'UTR 0.75 TCGA-L9-A7SV-01 X 26212497 26212497 A T MAGEB6 Silent p.V178V 0.49 TCGA-L9-A7SV-01 X 30872362 30872362 C A TAB3 Nonsense_Mutation p.E474* 0.88 TCGA-L9-A7SV-01 X 3240138 3240138 C A MXRA5 Silent p.V1196V 0.76 TCGA-L9-A7SV-01 X 34150106 34150106 A T FAM47A Missense_Mutation p.L97Q 0.28 tolerated(0.11) probably_damaging(0.983) TCGA-L9-A7SV-01 X 34961533 34961533 G T FAM47B Silent p.P195P 0.91 TCGA-L9-A7SV-01 X 34962671 34962671 G T FAM47B Nonsense_Mutation p.E575* 0.35 TCGA-L9-A7SV-01 X 37027154 37027154 C A FAM47C Missense_Mutation p.P224Q 0.42 deleterious(0.03) probably_damaging(0.943) TCGA-L9-A7SV-01 X 37641367 37641367 C A CYBB Missense_Mutation p.F24L 0.42 tolerated(0.2) benign(0.004) TCGA-L9-A7SV-01 X 37665661 37665661 C A CYBB Silent p.R446R 0.81 TCGA-L9-A7SV-01 X 38129073 38129073 T G TM4SF2 Intron 0.69 TCGA-L9-A7SV-01 X 39931816 39931816 C A BCOR Missense_Mutation p.S928I 0.49 deleterious(0.02) benign(0.282) TCGA-L9-A7SV-01 X 46332329 46332329 G A KRBOX4 Missense_Mutation p.S133N 0.62 tolerated(0.41) benign(0.004) TCGA-L9-A7SV-01 X 47315755 47315755 C A ZNF41 Nonsense_Mutation p.E39* 0.24 TCGA-L9-A7SV-01 X 49084722 49084722 C G CACNA1F Silent p.V335V 0.34 TCGA-L9-A7SV-01 X 49355818 49355818 G T GAGE2A Nonsense_Mutation p.E34* 0.25 TCGA-L9-A7SV-01 X 49961638 49961638 A G AKAP4 Silent p.A60A 0.88 TCGA-L9-A7SV-01 X 51150878 51150878 C A CXorf67 Missense_Mutation p.T337N 0.19 tolerated(0.53) possibly_damaging(0.471) TCGA-L9-A7SV-01 X 53574963 53574963 T A HUWE1 Missense_Mutation p.N3436I 0.56 possibly_damaging(0.703) TCGA-L9-A7SV-01 X 57619592 57619592 G T ZXDB Nonsense_Mutation p.E371* 0.36 TCGA-L9-A7SV-01 X 5821198 5821198 G T NLGN4X Silent p.L507L 0.93 TCGA-L9-A7SV-01 X 70340946 70340946 G T MED12 Nonsense_Mutation p.E227* 0.42 TCGA-L9-A7SV-01 X 72433139 72433139 C A NAP1L2 Missense_Mutation p.R397L 0.32 deleterious(0) possibly_damaging(0.587) TCGA-L9-A7SV-01 X 7268024 7268024 A T STS Missense_Mutation p.S492C 0.86 deleterious(0) benign(0.328) TCGA-L9-A7SV-01 X 73063569 73063569 G T XIST RNA 0.44 TCGA-L9-A7SV-01 X 73524515 73524515 C A ZCCHC13 Missense_Mutation p.H138Q 0.57 deleterious(0) probably_damaging(0.998) TCGA-L9-A7SV-01 X 75650649 75650649 G T MAGEE1 Missense_Mutation p.G776C 0.87 tolerated(0.11) probably_damaging(1) TCGA-L9-A7SV-01 X 78618468 78618468 G A ITM2A Missense_Mutation p.P138S 0.88 deleterious(0.01) possibly_damaging(0.8) TCGA-L9-A7SV-01 X 86888816 86888816 T G KLHL4 Silent p.T539T 0.92 TCGA-L9-A7SV-01 X 90690753 90690753 G T PABPC5 Silent p.L59L 0.80 TCGA-L9-A7SV-01 X 91131978 91131978 C A PCDH11X Missense_Mutation p.P247T 0.83 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 10 101595847 101595847 G T ABCC2 Splice_Site p.X1139_splice 0.22 TCGA-L9-A8F4-01 10 102088994 102088994 A G PKD2L1 Missense_Mutation p.I108T 0.12 deleterious(0.01) benign(0.009) TCGA-L9-A8F4-01 10 102265887 102265887 C G SEC31B Silent p.V318V 0.06 TCGA-L9-A8F4-01 10 102505911 102505911 A C PAX2 5'UTR 0.14 TCGA-L9-A8F4-01 10 103607336 103607336 G A C10orf76 Silent p.F673F 0.17 TCGA-L9-A8F4-01 10 104592810 104592810 G T CYP17A1 Silent p.G303G 0.16 TCGA-L9-A8F4-01 10 108434828 108434828 C T SORCS1 Missense_Mutation p.G640E 0.19 tolerated(0.07) possibly_damaging(0.686) TCGA-L9-A8F4-01 10 115381822 115381822 C A NRAP Nonsense_Mutation p.E859* 0.27 TCGA-L9-A8F4-01 10 117884914 117884914 G T GFRA1 Silent p.L196L 0.15 TCGA-L9-A8F4-01 10 119043168 119043168 C T PDZD8 Missense_Mutation p.G1026S 0.07 tolerated(0.41) benign(0.079) TCGA-L9-A8F4-01 10 128191373 128191373 A T C10orf90 Intron 0.06 TCGA-L9-A8F4-01 10 134161861 134161861 G C LRRC27 Splice_Site p.X309_splice 0.26 TCGA-L9-A8F4-01 10 1405251 1405251 C A ADARB2 Missense_Mutation p.G350V 0.36 tolerated(0.16) benign(0.049) TCGA-L9-A8F4-01 10 16547156 16547156 G T PTER Missense_Mutation p.R279I 0.08 tolerated(0.05) benign(0.148) TCGA-L9-A8F4-01 10 17107561 17107561 C T CUBN Missense_Mutation p.D1029N 0.23 tolerated(0.26) benign(0.003) TCGA-L9-A8F4-01 10 18827267 18827267 T C CACNB2 Silent p.L487L 0.07 TCGA-L9-A8F4-01 10 24911752 24911752 T A ARHGAP21 Intron 0.31 TCGA-L9-A8F4-01 10 25464744 25464744 C A GPR158 Missense_Mutation p.A132D 0.13 deleterious(0) probably_damaging(0.992) TCGA-L9-A8F4-01 10 27702294 27702294 A T PTCHD3 Missense_Mutation p.Y296N 0.16 tolerated(0.16) possibly_damaging(0.693) TCGA-L9-A8F4-01 10 32983899 32983899 C A C10ORF68 Missense_Mutation p.P120T 0.10 tolerated(0.18) probably_damaging(0.93) TCGA-L9-A8F4-01 10 37482124 37482124 G T ANKRD30A Missense_Mutation p.R795I 0.11 tolerated(0.09) benign(0.003) TCGA-L9-A8F4-01 10 45956740 45956740 C A MARCH8 Missense_Mutation p.R121L 0.19 deleterious(0) probably_damaging(0.959) TCGA-L9-A8F4-01 10 48389863 48389863 C A RBP3 Missense_Mutation p.D339Y 0.31 deleterious(0) probably_damaging(0.928) TCGA-L9-A8F4-01 10 48390420 48390420 G A RBP3 Missense_Mutation p.A153V 0.12 tolerated(0.12) possibly_damaging(0.547) TCGA-L9-A8F4-01 10 55700623 55700623 C A PCDH15 Intron 0.17 TCGA-L9-A8F4-01 10 62648663 62648663 C T RHOBTB1 Missense_Mutation p.E255K 0.16 tolerated(0.78) benign(0.075) TCGA-L9-A8F4-01 10 64950776 64950776 A G JMJD1C Missense_Mutation p.S2057P 0.06 tolerated(0.19) benign(0.03) TCGA-L9-A8F4-01 10 70154104 70154104 C - RUFY2 Frame_Shift_Del p.G203Efs*4 0.13 TCGA-L9-A8F4-01 10 73558951 73558951 C A CDH23 Missense_Mutation p.P140T 0.08 deleterious(0) probably_damaging(0.979) TCGA-L9-A8F4-01 10 7618637 7618637 A T ITIH5 Missense_Mutation p.L586Q 0.09 tolerated(0.06) benign(0.351) TCGA-L9-A8F4-01 10 77807029 77807029 G C C10orf11 Missense_Mutation p.L94F 0.29 tolerated(0.28) benign(0.077) TCGA-L9-A8F4-01 10 79603269 79603270 TC - DLG5 Frame_Shift_Del p.E353Dfs*24 0.13 TCGA-L9-A8F4-01 10 79745708 79745708 G A POLR3A Silent p.P1008P 0.13 TCGA-L9-A8F4-01 10 81049613 81049613 G T ZMIZ1 Silent p.T169T 0.37 TCGA-L9-A8F4-01 10 82369273 82369273 G A SH2D4B Silent p.E317E 0.12 TCGA-L9-A8F4-01 10 84498375 84498375 G T NRG3 Silent p.L332L 0.18 TCGA-L9-A8F4-01 10 90045136 90045136 A G RNLS Missense_Mutation p.L335P 0.30 deleterious(0.02) possibly_damaging(0.808) TCGA-L9-A8F4-01 10 92672587 92672587 A G ANKRD1 3'UTR 0.14 TCGA-L9-A8F4-01 10 95123772 95123772 C T MYOF Silent p.E938E 0.31 TCGA-L9-A8F4-01 10 98157031 98157031 C T TLL2 Silent p.E432E 0.26 TCGA-L9-A8F4-01 10 98802762 98802762 C A SLIT1 Missense_Mutation p.R687L 0.27 deleterious(0) probably_damaging(0.991) TCGA-L9-A8F4-01 10 98816982 98816982 T A SLIT1 Missense_Mutation p.Y381F 0.12 tolerated(0.71) benign(0.009) TCGA-L9-A8F4-01 10 99531184 99531184 G C SFRP5 Missense_Mutation p.A136G 0.34 tolerated(0.09) benign(0.025) TCGA-L9-A8F4-01 11 101375132 101375132 T C TRPC6 Missense_Mutation p.K190E 0.16 tolerated(0.77) probably_damaging(0.998) TCGA-L9-A8F4-01 11 10327881 10327881 G T ADM Missense_Mutation p.S84I 0.29 tolerated(0.05) benign(0.007) TCGA-L9-A8F4-01 11 104877830 104877830 T A CASP5 Missense_Mutation p.Q151L 0.06 tolerated(0.13) benign(0.175) TCGA-L9-A8F4-01 11 111405284 111405284 C A C11orf88 Intron 0.29 TCGA-L9-A8F4-01 11 111779494 111779494 C T CRYAB Silent p.K174K 0.22 TCGA-L9-A8F4-01 11 113235641 113235641 A G TTC12 Missense_Mutation p.E634G 0.12 tolerated(0.1) benign(0.414) TCGA-L9-A8F4-01 11 113661234 113661234 T - ATF4P4 RNA 0.13 TCGA-L9-A8F4-01 11 113661441 113661441 C A ATF4P4 RNA 0.23 TCGA-L9-A8F4-01 11 118772377 118772377 T - BCL9L Frame_Shift_Del p.Q692Rfs*20 0.14 TCGA-L9-A8F4-01 11 122930706 122930706 C A HSPA8 Missense_Mutation p.D199Y 0.26 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-L9-A8F4-01 11 124189483 124189483 C A OR8D2 Missense_Mutation p.G204V 0.06 tolerated(0.06) probably_damaging(1) TCGA-L9-A8F4-01 11 124967553 124967553 T C TMEM218 Silent p.L99L 0.12 TCGA-L9-A8F4-01 11 125359417 125359417 G T FEZ1 Missense_Mutation p.P86H 0.12 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 11 125478034 125478034 T C STT3A Missense_Mutation p.F271L 0.05 tolerated(1) benign(0.001) TCGA-L9-A8F4-01 11 125617646 125617646 A G PATE1 Missense_Mutation p.K59R 0.07 tolerated(0.28) benign(0.064) TCGA-L9-A8F4-01 11 130058079 130058079 G A ST14 Missense_Mutation p.G51D 0.08 deleterious(0.03) benign(0.295) TCGA-L9-A8F4-01 11 1643218 1643218 C A KRTAP5-4 Missense_Mutation p.G36W 0.32 deleterious_low_confidence(0) unknown(0) TCGA-L9-A8F4-01 11 20628645 20628645 G T SLC6A5 Nonsense_Mutation p.G258* 0.29 TCGA-L9-A8F4-01 11 32949575 32949575 G A QSER1 Translation_Start_Site p.M1? 0.21 deleterious(0) benign(0.098) TCGA-L9-A8F4-01 11 45671611 45671611 A G CHST1 Missense_Mutation p.M288T 0.27 tolerated(0.27) benign(0) TCGA-L9-A8F4-01 11 46693827 46693827 C G ATG13 Missense_Mutation p.A533G 0.10 deleterious(0.01) probably_damaging(0.978) TCGA-L9-A8F4-01 11 4945176 4945176 G T OR51G1 Missense_Mutation p.L132M 0.15 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 11 49974093 49974093 A G OR4C13 Missense_Mutation p.N40S 0.11 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-L9-A8F4-01 11 5443658 5443658 C T OR51Q1 Silent p.T76T 0.36 TCGA-L9-A8F4-01 11 56310225 56310225 G T OR5M11 Missense_Mutation p.S170Y 0.35 deleterious(0) probably_damaging(0.976) TCGA-L9-A8F4-01 11 57413536 57413536 G C YPEL4 Missense_Mutation p.A101G 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-L9-A8F4-01 11 59837833 59837833 A T MS4A3 3'UTR 0.50 TCGA-L9-A8F4-01 11 61048547 61048547 G T VWCE Silent p.T316T 0.33 TCGA-L9-A8F4-01 11 6239283 6239283 C A FAM160A2 Silent p.L525L 0.35 TCGA-L9-A8F4-01 11 63960753 63960753 G T STIP1 Missense_Mutation p.W71C 0.36 deleterious(0) probably_damaging(0.971) TCGA-L9-A8F4-01 11 65714954 65714954 C A TSGA10IP RNA 0.36 TCGA-L9-A8F4-01 11 66192030 66192030 C A NPAS4 Missense_Mutation p.P557T 0.16 tolerated_low_confidence(0.3) benign(0.002) TCGA-L9-A8F4-01 11 68029342 68029342 T A C11orf24 Missense_Mutation p.D374V 0.27 deleterious(0) probably_damaging(0.972) TCGA-L9-A8F4-01 11 7022167 7022167 G C ZNF214 Missense_Mutation p.C249W 0.10 deleterious(0) possibly_damaging(0.787) TCGA-L9-A8F4-01 11 76980956 76980956 C G GDPD4 Missense_Mutation p.K150N 0.16 deleterious(0.01) possibly_damaging(0.848) TCGA-L9-A8F4-01 11 77774927 77774927 C A THRSP 5'UTR 0.21 TCGA-L9-A8F4-01 11 7847149 7847149 A T OR5P3 Missense_Mutation p.V124E 0.16 deleterious(0.01) benign(0.078) TCGA-L9-A8F4-01 11 82951929 82951929 C T ANKRD42 Missense_Mutation p.A355V 0.10 tolerated(0.07) benign(0.079) TCGA-L9-A8F4-01 11 9165715 9165715 C G DENND5A Missense_Mutation p.R1078P 0.37 deleterious(0.03) possibly_damaging(0.818) TCGA-L9-A8F4-01 11 92087503 92087503 G T FAT3 Missense_Mutation p.G742V 0.20 probably_damaging(1) TCGA-L9-A8F4-01 11 92532804 92532804 A T FAT3 Missense_Mutation p.N2209Y 0.21 probably_damaging(1) TCGA-L9-A8F4-01 11 92533871 92533871 A G FAT3 Silent p.L2564L 0.14 TCGA-L9-A8F4-01 11 94197406 94197406 C A MRE11A Splice_Site p.X367_splice 0.27 TCGA-L9-A8F4-01 12 10218275 10218275 C A CLEC9A 3'UTR 0.17 TCGA-L9-A8F4-01 12 104155106 104155106 C A STAB2 Missense_Mutation p.A2426D 0.10 tolerated(0.19) probably_damaging(0.953) TCGA-L9-A8F4-01 12 104157379 104157379 C G STAB2 Missense_Mutation p.P2533R 0.14 tolerated(0.06) benign(0.04) TCGA-L9-A8F4-01 12 110777390 110777391 AG - ATP2A2 Frame_Shift_Del p.K543Dfs*10 0.14 TCGA-L9-A8F4-01 12 122392091 122392091 C G WDR66 Silent p.L462L 0.21 TCGA-L9-A8F4-01 12 122684735 122684735 G A LRRC43 Splice_Site p.X450_splice 0.19 TCGA-L9-A8F4-01 12 126004148 126004148 G C TMEM132B Missense_Mutation p.V419L 0.10 tolerated(0.13) benign(0.362) TCGA-L9-A8F4-01 12 13717132 13717132 G T GRIN2B Missense_Mutation p.Q1014K 0.10 tolerated(0.55) possibly_damaging(0.855) TCGA-L9-A8F4-01 12 1741919 1741919 G T WNT5B Missense_Mutation p.R59M 0.20 tolerated(0.07) probably_damaging(0.93) TCGA-L9-A8F4-01 12 18524197 18524197 A T PIK3C2G Missense_Mutation p.N570I 0.12 deleterious(0.02) possibly_damaging(0.515) TCGA-L9-A8F4-01 12 20896278 20896278 C A SLCO1C1 Silent p.I591I 0.10 TCGA-L9-A8F4-01 12 25047208 25047208 C A BCAT1 Splice_Site p.X105_splice 0.16 TCGA-L9-A8F4-01 12 29644098 29644098 G T OVCH1 Missense_Mutation p.P161H 0.16 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 12 3018724 3018724 G T TULP3 Missense_Mutation p.R24L 0.22 deleterious(0) probably_damaging(0.932) TCGA-L9-A8F4-01 12 49658922 49658922 C T TUBA1C 5'UTR 0.13 TCGA-L9-A8F4-01 12 49854792 49854792 G T SPATS2 5'UTR 0.24 TCGA-L9-A8F4-01 12 5020833 5020833 C A KCNA1 Missense_Mutation p.Q97K 0.16 deleterious(0) benign(0.35) TCGA-L9-A8F4-01 12 52284450 52284450 G T ANKRD33 Silent p.V240V 0.33 TCGA-L9-A8F4-01 12 52374900 52374900 C A ACVR1B Missense_Mutation p.S243Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-L9-A8F4-01 12 52470812 52470812 G T C12orf44 Missense_Mutation p.L165F 0.06 deleterious(0.01) possibly_damaging(0.885) TCGA-L9-A8F4-01 12 52799674 52799674 G A KRT82 Missense_Mutation p.R130C 0.11 deleterious(0) probably_damaging(0.975) TCGA-L9-A8F4-01 12 52884503 52884503 C A KRT6A Missense_Mutation p.M309I 0.05 tolerated(0.15) benign(0.123) TCGA-L9-A8F4-01 12 53045731 53045731 G T KRT2 Missense_Mutation p.L66I 0.23 deleterious(0.01) unknown(0) TCGA-L9-A8F4-01 12 55024624 55024624 C A LACRT 3'UTR 0.21 TCGA-L9-A8F4-01 12 56332317 56332317 G T DGKA Silent p.T124T 0.14 TCGA-L9-A8F4-01 12 56743439 56743439 G C STAT2 Intron 0.16 TCGA-L9-A8F4-01 12 57881766 57881766 G A MARS 5'UTR 0.18 TCGA-L9-A8F4-01 12 58006604 58006604 G A ARHGEF25 Intron 0.14 TCGA-L9-A8F4-01 12 66152475 66152475 G T RPSAP52 RNA 0.15 TCGA-L9-A8F4-01 12 72007112 72007112 T A ZFC3H1 Intron 0.19 TCGA-L9-A8F4-01 12 78400770 78400770 C A NAV3 Silent p.V484V 0.07 TCGA-L9-A8F4-01 12 85257235 85257235 C T SLC6A15 Missense_Mutation p.A601T 0.10 deleterious(0.02) probably_damaging(1) TCGA-L9-A8F4-01 13 24234597 24234597 G T TNFRSF19 Missense_Mutation p.C235F 0.29 deleterious(0) probably_damaging(0.957) TCGA-L9-A8F4-01 13 25419184 25419184 G A RNF17 Missense_Mutation p.R1023K 0.35 tolerated(0.72) probably_damaging(0.92) TCGA-L9-A8F4-01 13 35615294 35615294 G T NBEA Missense_Mutation p.M173I 0.19 tolerated(0.23) benign(0.175) TCGA-L9-A8F4-01 13 37014237 37014237 C T CCNA1 Silent p.L339L 0.17 TCGA-L9-A8F4-01 13 41650333 41650333 G T WBP4 Missense_Mutation p.G239V 0.22 tolerated(0.15) benign(0) TCGA-L9-A8F4-01 13 50275916 50275916 G C KPNA3 3'UTR 0.22 TCGA-L9-A8F4-01 13 52678664 52678664 G C NEK5 Silent p.V193V 0.12 TCGA-L9-A8F4-01 13 52952598 52952598 G T THSD1 Missense_Mutation p.P503T 0.14 tolerated(0.11) benign(0.027) TCGA-L9-A8F4-01 13 64321158 64321158 C A AL445989.1 Silent p.G75G 0.31 TCGA-L9-A8F4-01 13 67801939 67801939 T A PCDH9 Nonsense_Mutation p.R212* 0.25 TCGA-L9-A8F4-01 13 72255960 72255960 C A DACH1 Missense_Mutation p.G313C 0.30 probably_damaging(0.993) TCGA-L9-A8F4-01 13 77736079 77736079 C G MYCBP2 Missense_Mutation p.E2149Q 0.11 probably_damaging(0.977) TCGA-L9-A8F4-01 14 105415953 105415953 G T AHNAK2 Silent p.P1945P 0.15 TCGA-L9-A8F4-01 14 106610790 106610790 C T IGHV3-15 5'UTR 0.14 TCGA-L9-A8F4-01 14 106926462 106926462 C T IGHV3-43 Missense_Mutation p.G27E 0.05 deleterious_low_confidence(0.02) benign(0.296) TCGA-L9-A8F4-01 14 19377598 19377598 G C OR11H12 Missense_Mutation p.C2S 0.17 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-L9-A8F4-01 14 19378202 19378202 T C OR11H12 Silent p.D203D 0.21 TCGA-L9-A8F4-01 14 20249108 20249108 G T OR4M1 Silent p.V209V 0.08 TCGA-L9-A8F4-01 14 20444596 20444596 A T OR4K15 Missense_Mutation p.N307Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-L9-A8F4-01 14 20854292 20854292 G A TEP1 Missense_Mutation p.S975F 0.27 deleterious(0) probably_damaging(0.984) TCGA-L9-A8F4-01 14 21968706 21968706 T A METTL3 Missense_Mutation p.D412V 0.23 deleterious(0) probably_damaging(0.999) TCGA-L9-A8F4-01 14 22192367 22192367 G A TRAV3 Missense_Mutation p.G48R 0.13 tolerated(0.2) benign(0.072) TCGA-L9-A8F4-01 14 22933198 22933198 A G TRDC Missense_Mutation p.I117V 0.21 tolerated(0.57) benign(0.003) TCGA-L9-A8F4-01 14 23859493 23859493 G T MYH6 Missense_Mutation p.R1169S 0.17 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 14 23884955 23884955 C A MYH7 Silent p.L1680L 0.24 TCGA-L9-A8F4-01 14 24774860 24774860 C T CIDEB Silent p.K213K 0.25 TCGA-L9-A8F4-01 14 32319328 32319328 A G NUBPL Missense_Mutation p.D273G 0.19 tolerated(0.08) possibly_damaging(0.694) TCGA-L9-A8F4-01 14 32561844 32561844 G T ARHGAP5 Missense_Mutation p.G657W 0.19 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 14 36841142 36841142 G T DPPA3P2 RNA 0.19 TCGA-L9-A8F4-01 14 44975012 44975012 G T FSCB Silent p.P393P 0.23 TCGA-L9-A8F4-01 14 45716574 45716574 C A MIS18BP1 5'UTR 0.14 TCGA-L9-A8F4-01 14 58953873 58953873 G T KIAA0586 Missense_Mutation p.C1151F 0.13 tolerated(0.81) benign(0) TCGA-L9-A8F4-01 14 61201535 61201535 C T MNAT1 5'UTR 0.27 TCGA-L9-A8F4-01 14 67389580 67389580 G C GPHN Missense_Mutation p.E218D 0.06 deleterious_low_confidence(0.02) benign(0.034) TCGA-L9-A8F4-01 14 67390935 67390935 G T GPHN Missense_Mutation p.A252S 0.25 tolerated_low_confidence(0.43) benign(0.052) TCGA-L9-A8F4-01 14 71500146 71500146 G T PCNX Missense_Mutation p.D1187Y 0.19 deleterious(0) possibly_damaging(0.873) TCGA-L9-A8F4-01 14 74449720 74449720 C T ENTPD5 Splice_Site p.X147_splice 0.07 TCGA-L9-A8F4-01 14 77860977 77860977 T C NOXRED1 Silent p.Q359Q 0.11 TCGA-L9-A8F4-01 14 79181366 79181366 G T NRXN3 Missense_Mutation p.S270I 0.14 tolerated(0.13) probably_damaging(0.921) TCGA-L9-A8F4-01 14 88904317 88904317 G A SPATA7 Missense_Mutation p.E451K 0.31 tolerated(0.28) benign(0.002) TCGA-L9-A8F4-01 14 89038938 89038938 G T ZC3H14 Nonsense_Mutation p.G150* 0.29 TCGA-L9-A8F4-01 14 95591000 95591000 T C DICER1 Silent p.L303L 0.17 TCGA-L9-A8F4-01 14 99641484 99641484 G T BCL11B Missense_Mutation p.S563R 0.13 tolerated(0.21) possibly_damaging(0.767) TCGA-L9-A8F4-01 15 100332706 100332706 C A AC090825.1 3'Flank 0.29 TCGA-L9-A8F4-01 15 20170323 20170323 A T IGHV1OR15-9 Missense_Mutation p.V11E 0.24 deleterious(0) possibly_damaging(0.84) TCGA-L9-A8F4-01 15 24921526 24921526 G A NPAP1 Missense_Mutation p.G171E 0.21 deleterious(0.01) possibly_damaging(0.842) TCGA-L9-A8F4-01 15 25422039 25422039 C A SNORD115-4 RNA 0.32 TCGA-L9-A8F4-01 15 25490507 25490507 C A SNORD115-40 3'Flank 0.23 TCGA-L9-A8F4-01 15 27182439 27182439 C A GABRA5 Missense_Mutation p.Q230K 0.31 tolerated(0.08) benign(0.174) TCGA-L9-A8F4-01 15 28519557 28519557 T G HERC2 Missense_Mutation p.E227A 0.43 possibly_damaging(0.836) TCGA-L9-A8F4-01 15 33962717 33962717 A T RYR3 Silent p.P1940P 0.33 TCGA-L9-A8F4-01 15 34115263 34115263 C A RYR3 Missense_Mutation p.Q3688K 0.40 benign(0.044) TCGA-L9-A8F4-01 15 43282277 43282277 C A UBR1 Missense_Mutation p.D1267Y 0.39 deleterious(0) benign(0.429) TCGA-L9-A8F4-01 15 50782458 50782458 A C USP8 Splice_Site p.X658_splice 0.06 TCGA-L9-A8F4-01 15 51773041 51773041 A T DMXL2 Missense_Mutation p.C2088S 0.05 deleterious(0) possibly_damaging(0.855) TCGA-L9-A8F4-01 15 54025231 54025231 C AA WDR72 Frame_Shift_Ins p.G39Vfs*11 0.23 TCGA-L9-A8F4-01 15 54306675 54306675 A T UNC13C Silent p.T525T 0.25 TCGA-L9-A8F4-01 15 56144740 56144740 A T NEDD4 Missense_Mutation p.L690H 0.29 deleterious(0.03) probably_damaging(0.994) TCGA-L9-A8F4-01 15 58971391 58971391 G A ADAM10 Missense_Mutation p.P139L 0.27 tolerated(0.11) benign(0.345) TCGA-L9-A8F4-01 15 69689848 69689848 G T PAQR5 Missense_Mutation p.R185L 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-L9-A8F4-01 15 72190083 72190083 T C MYO9A Silent p.K1587K 0.22 TCGA-L9-A8F4-01 15 75042851 75042851 C A CYP1A2 Missense_Mutation p.Q258K 0.35 tolerated(0.76) benign(0.001) TCGA-L9-A8F4-01 15 75722653 75722653 C A SIN3A Missense_Mutation p.G22C 0.32 tolerated_low_confidence(0.06) benign(0.299) TCGA-L9-A8F4-01 15 81631039 81631039 T A TMC3 Missense_Mutation p.I680F 0.12 deleterious(0) benign(0.04) TCGA-L9-A8F4-01 15 84560078 84560078 T C ADAMTSL3 Intron 0.28 TCGA-L9-A8F4-01 15 86076815 86076815 G A AKAP13 Missense_Mutation p.G61D 0.35 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 16 14306227 14306227 G T MKL2 Silent p.A79A 0.22 TCGA-L9-A8F4-01 16 19522217 19522217 C G GDE1 Missense_Mutation p.E163Q 0.18 tolerated(0.05) probably_damaging(0.998) TCGA-L9-A8F4-01 16 19693584 19693584 A C C16orf62 Missense_Mutation p.E889A 0.15 tolerated(0.47) benign(0.023) TCGA-L9-A8F4-01 16 19800160 19800160 C T IQCK Silent p.H202H 0.24 TCGA-L9-A8F4-01 16 20043618 20043618 G A GPR139 Silent p.P167P 0.18 TCGA-L9-A8F4-01 16 20386243 20386243 C T PDILT Silent p.V194V 0.08 TCGA-L9-A8F4-01 16 20566720 20566720 G T ACSM2B Missense_Mutation p.A156D 0.21 deleterious(0) probably_damaging(0.967) TCGA-L9-A8F4-01 16 20673126 20673126 C A ACSM1 Missense_Mutation p.D328Y 0.14 deleterious(0) possibly_damaging(0.652) TCGA-L9-A8F4-01 16 20986669 20986669 G T DNAH3 Silent p.A2715A 0.22 TCGA-L9-A8F4-01 16 21693073 21693073 C A OTOA Missense_Mutation p.T65K 0.20 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-L9-A8F4-01 16 21693074 21693074 G T OTOA Silent p.T65T 0.20 TCGA-L9-A8F4-01 16 24166113 24166113 C T PRKCB Missense_Mutation p.R392W 0.21 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 16 24909428 24909428 C A SLC5A11 Missense_Mutation p.P335Q 0.29 deleterious(0) probably_damaging(0.991) TCGA-L9-A8F4-01 16 2510818 2510818 A G C16orf59 Silent p.A66A 0.29 TCGA-L9-A8F4-01 16 27221722 27221722 G T KDM8 Missense_Mutation p.R131L 0.12 deleterious(0.02) benign(0.105) TCGA-L9-A8F4-01 16 27454429 27454429 T A IL21R Missense_Mutation p.W167R 0.23 deleterious(0.04) benign(0.032) TCGA-L9-A8F4-01 16 27761391 27761391 G A KIAA0556 Missense_Mutation p.G1037E 0.30 deleterious(0) probably_damaging(0.976) TCGA-L9-A8F4-01 16 28841307 28841307 G T ATXN2L Missense_Mutation p.R321L 0.24 deleterious(0.04) probably_damaging(0.918) TCGA-L9-A8F4-01 16 29888180 29888180 C A SEZ6L2 Silent p.V667V 0.35 TCGA-L9-A8F4-01 16 30001120 30001120 A T TAOK2 3'Flank 0.18 TCGA-L9-A8F4-01 16 30129386 30129386 C A MAPK3 Missense_Mutation p.E214D 0.26 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 16 30744621 30744621 G T SRCAP Missense_Mutation p.V2050L 0.23 benign(0.138) TCGA-L9-A8F4-01 16 30750554 30750554 C T SRCAP Missense_Mutation p.R3065C 0.26 unknown(0) TCGA-L9-A8F4-01 16 30762880 30762880 C T PHKG2 Silent p.I94I 0.23 TCGA-L9-A8F4-01 16 30964852 30964852 G T ORAI3 Missense_Mutation p.R192L 0.22 tolerated_low_confidence(0.34) benign(0) TCGA-L9-A8F4-01 16 32891015 32891015 A G SLC6A10P RNA 0.09 TCGA-L9-A8F4-01 16 34739758 34739758 G T RP11-80F22.15 RNA 0.12 TCGA-L9-A8F4-01 16 4016268 4016268 G A ADCY9 Silent p.T1190T 0.28 TCGA-L9-A8F4-01 16 48250123 48250123 A T ABCC11 Missense_Mutation p.C285S 0.23 tolerated(0.54) benign(0.01) TCGA-L9-A8F4-01 16 48250124 48250124 G T ABCC11 Silent p.T284T 0.23 TCGA-L9-A8F4-01 16 49433176 49433176 G T C16orf78 Missense_Mutation p.S262I 0.21 deleterious(0) possibly_damaging(0.899) TCGA-L9-A8F4-01 16 50324395 50324395 G T ADCY7 Missense_Mutation p.G67C 0.14 tolerated(0.21) benign(0.006) TCGA-L9-A8F4-01 16 50744961 50744961 G T NOD2 Missense_Mutation p.G380V 0.26 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 16 5122987 5122988 AG - ALG1 Frame_Shift_Del p.R82Nfs*55 0.12 TCGA-L9-A8F4-01 16 53503942 53503942 G T RBL2 Missense_Mutation p.R697L 0.19 tolerated(0.32) benign(0.002) TCGA-L9-A8F4-01 16 55725832 55725832 G C SLC6A2 Silent p.V262V 0.19 TCGA-L9-A8F4-01 16 57996958 57996958 T A CNGB1 Missense_Mutation p.R101W 0.13 tolerated_low_confidence(0.35) benign(0) TCGA-L9-A8F4-01 16 61858921 61858921 G T CDH8 Missense_Mutation p.A277E 0.22 deleterious(0.02) benign(0.147) TCGA-L9-A8F4-01 16 66643345 66643345 T C CMTM3 Missense_Mutation p.L104P 0.17 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 16 72110231 72110231 C A HPR Missense_Mutation p.P100T 0.16 deleterious(0.04) benign(0.028) TCGA-L9-A8F4-01 16 72130349 72130349 A T DHX38 Missense_Mutation p.D98V 0.18 tolerated(0.22) benign(0.045) TCGA-L9-A8F4-01 16 74446715 74446715 C T CLEC18B Missense_Mutation p.C247Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-L9-A8F4-01 16 89253873 89253873 G A CDH15 Missense_Mutation p.D234N 0.45 deleterious(0.01) probably_damaging(0.938) TCGA-L9-A8F4-01 16 89590614 89590614 G T SPG7 Nonsense_Mutation p.E193* 0.20 TCGA-L9-A8F4-01 16 89661937 89661937 G - CPNE7 Frame_Shift_Del p.V564Sfs*81 0.31 TCGA-L9-A8F4-01 17 10357108 10357108 C T MYH4 Missense_Mutation p.R929K 0.34 tolerated(0.07) probably_damaging(0.989) TCGA-L9-A8F4-01 17 10542711 10542711 C T MYH3 Silent p.E1002E 0.07 TCGA-L9-A8F4-01 17 18395818 18395818 G T LGALS9C Missense_Mutation p.K240N 0.16 deleterious(0.04) probably_damaging(0.982) TCGA-L9-A8F4-01 17 19584876 19584876 G T SLC47A2 Silent p.T460T 0.21 TCGA-L9-A8F4-01 17 19609960 19609960 C G SLC47A2 Splice_Site p.X317_splice 0.36 TCGA-L9-A8F4-01 17 21731077 21731077 G T UBBP4 Nonsense_Mutation p.E127* 0.18 TCGA-L9-A8F4-01 17 21825523 21825523 C A FAM27L RNA 0.15 TCGA-L9-A8F4-01 17 21826136 21826136 C A FAM27L RNA 0.15 TCGA-L9-A8F4-01 17 25748778 25748778 G C TBC1D3P5 RNA 0.33 TCGA-L9-A8F4-01 17 31350951 31350951 A T ASIC2 Missense_Mutation p.M426K 0.38 deleterious(0) possibly_damaging(0.9) TCGA-L9-A8F4-01 17 33520841 33520841 C A SLC35G3 Silent p.L162L 0.14 TCGA-L9-A8F4-01 17 34266271 34266271 C T LYZL6 Silent p.V30V 0.41 TCGA-L9-A8F4-01 17 3628058 3628058 G T GSG2 Missense_Mutation p.V277L 0.31 tolerated_low_confidence(0.44) benign(0.001) TCGA-L9-A8F4-01 17 36936827 36936827 T A PIP4K2B Missense_Mutation p.S129C 0.39 tolerated(0.17) benign(0.049) TCGA-L9-A8F4-01 17 38175838 38175838 C A MED24 Missense_Mutation p.D972Y 0.38 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 17 38175839 38175839 C A MED24 Silent p.T971T 0.38 TCGA-L9-A8F4-01 17 39726463 39726463 G C KRT9 Missense_Mutation p.L218V 0.30 deleterious(0.02) benign(0.1) TCGA-L9-A8F4-01 17 39846405 39846405 T C EIF1 Silent p.G87G 0.21 TCGA-L9-A8F4-01 17 40001565 40001565 C A KLHL10 Missense_Mutation p.A291D 0.34 tolerated(0.47) benign(0.001) TCGA-L9-A8F4-01 17 48433545 48433545 T A XYLT2 Missense_Mutation p.C469S 0.31 deleterious(0.01) benign(0.099) TCGA-L9-A8F4-01 17 5071263 5071263 C T USP6 Nonsense_Mutation p.R1025* 0.33 TCGA-L9-A8F4-01 17 5392853 5392853 G T MIS12 3'UTR 0.50 TCGA-L9-A8F4-01 17 57058312 57058312 T A PPM1E Missense_Mutation p.Y730N 0.34 tolerated_low_confidence(0.16) benign(0.242) TCGA-L9-A8F4-01 17 58725444 58725444 G T PPM1D Splice_Site p.X339_splice 0.12 TCGA-L9-A8F4-01 17 61560492 61560492 G C ACE Missense_Mutation p.R482P 0.25 tolerated(0.26) possibly_damaging(0.817) TCGA-L9-A8F4-01 17 61988504 61988504 C A CSHL1 Intron 0.18 TCGA-L9-A8F4-01 17 648796 648796 C T GEMIN4 Silent p.S829S 0.43 TCGA-L9-A8F4-01 17 67280207 67280207 A G ABCA5 Missense_Mutation p.F760S 0.33 deleterious(0) probably_damaging(0.999) TCGA-L9-A8F4-01 17 67299038 67299038 C A ABCA5 Missense_Mutation p.A314S 0.09 tolerated(0.67) possibly_damaging(0.669) TCGA-L9-A8F4-01 17 73486431 73486431 G T KIAA0195 Silent p.L357L 0.33 TCGA-L9-A8F4-01 17 73564915 73564915 C T LLGL2 Silent p.L439L 0.33 TCGA-L9-A8F4-01 17 74732218 74732218 C T SRSF2 3'UTR 0.10 TCGA-L9-A8F4-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.30 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 17 8726325 8726325 T C PIK3R6 Missense_Mutation p.K569E 0.32 tolerated(0.35) possibly_damaging(0.788) TCGA-L9-A8F4-01 18 31319985 31319985 G A ASXL3 Missense_Mutation p.E873K 0.11 possibly_damaging(0.497) TCGA-L9-A8F4-01 18 31320092 31320092 C A ASXL3 Silent p.I908I 0.22 TCGA-L9-A8F4-01 18 3880115 3880115 G T DLGAP1 5'UTR 0.46 TCGA-L9-A8F4-01 18 44408003 44408003 C A PIAS2 Missense_Mutation p.S476I 0.22 deleterious(0) benign(0.164) TCGA-L9-A8F4-01 18 7034666 7034666 T A LAMA1 Silent p.T621T 0.26 TCGA-L9-A8F4-01 18 77227510 77227510 G T NFATC1 Missense_Mutation p.V661F 0.26 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 19 10463645 10463645 C T TYK2 Missense_Mutation p.E1053K 0.22 tolerated(0.28) benign(0.259) TCGA-L9-A8F4-01 19 1207065 1207065 G - STK11 Frame_Shift_Del p.D53Tfs*11 0.30 TCGA-L9-A8F4-01 19 12767784 12767784 C A MAN2B1 Silent p.P502P 0.20 TCGA-L9-A8F4-01 19 14992062 14992062 G T OR7A17 Missense_Mutation p.L36M 0.30 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-L9-A8F4-01 19 15198736 15198736 C G OR1I1 Missense_Mutation p.P287R 0.22 deleterious(0) possibly_damaging(0.845) TCGA-L9-A8F4-01 19 30934636 30934636 C A ZNF536 Missense_Mutation p.P56H 0.26 deleterious_low_confidence(0) possibly_damaging(0.503) TCGA-L9-A8F4-01 19 30934971 30934971 G C ZNF536 Missense_Mutation p.A168P 0.13 tolerated(0.05) probably_damaging(0.999) TCGA-L9-A8F4-01 19 31038993 31038993 G C ZNF536 Missense_Mutation p.D823H 0.23 deleterious(0) possibly_damaging(0.8) TCGA-L9-A8F4-01 19 35232785 35232785 G A ZNF181 Missense_Mutation p.C500Y 0.28 tolerated(1) probably_damaging(0.99) TCGA-L9-A8F4-01 19 35804336 35804336 T C MAG Silent p.Y620Y 0.28 TCGA-L9-A8F4-01 19 36351482 36351482 G C KIRREL2 Missense_Mutation p.D281H 0.22 deleterious(0) probably_damaging(0.992) TCGA-L9-A8F4-01 19 37734162 37734162 G T ZNF383 Nonsense_Mutation p.E342* 0.18 TCGA-L9-A8F4-01 19 38960044 38960044 A T RYR1 Missense_Mutation p.Q1219L 0.25 probably_damaging(0.933) TCGA-L9-A8F4-01 19 38969099 38969099 G T RYR1 Missense_Mutation p.M1493I 0.15 possibly_damaging(0.56) TCGA-L9-A8F4-01 19 40354434 40354434 C A FCGBP Silent p.G5345G 0.14 TCGA-L9-A8F4-01 19 41211240 41211240 G A ADCK4 Silent p.L160L 0.33 TCGA-L9-A8F4-01 19 41270931 41270931 G C SNRPA Missense_Mutation p.E236D 0.17 deleterious(0.04) probably_damaging(0.973) TCGA-L9-A8F4-01 19 42479927 42479927 C T ATP1A3 Missense_Mutation p.G719E 0.06 deleterious(0.02) probably_damaging(1) TCGA-L9-A8F4-01 19 4318945 4318945 C G FSD1 Missense_Mutation p.L346V 0.14 tolerated(0.06) possibly_damaging(0.837) TCGA-L9-A8F4-01 19 43763149 43763149 C A PSG9 Missense_Mutation p.S283I 0.41 deleterious(0.03) benign(0.063) TCGA-L9-A8F4-01 19 43772027 43772027 G T PSG9 Silent p.T113T 0.23 TCGA-L9-A8F4-01 19 44933443 44933443 G T ZNF229 Missense_Mutation p.Q505K 0.27 tolerated(0.12) benign(0.057) TCGA-L9-A8F4-01 19 47856759 47856759 G T DHX34 Nonsense_Mutation p.E158* 0.30 TCGA-L9-A8F4-01 19 49539411 49539411 G A CGB1 Silent p.A53A 0.05 TCGA-L9-A8F4-01 19 49692320 49692320 G T TRPM4 Missense_Mutation p.R664L 0.23 deleterious(0.04) benign(0.169) TCGA-L9-A8F4-01 19 49812569 49812569 C A SLC6A16 Missense_Mutation p.V326L 0.17 tolerated(1) benign(0.003) TCGA-L9-A8F4-01 19 49812626 49812626 C A SLC6A16 Missense_Mutation p.G307C 0.17 tolerated(1) benign(0.009) TCGA-L9-A8F4-01 19 49912245 49912245 C A CCDC155 Missense_Mutation p.R339S 0.47 deleterious(0.03) benign(0.132) TCGA-L9-A8F4-01 19 50247519 50247519 A G TSKS Missense_Mutation p.S444P 0.12 tolerated(0.42) benign(0.002) TCGA-L9-A8F4-01 19 50812334 50812334 G T MYH14 Missense_Mutation p.A1954S 0.14 tolerated(0.34) possibly_damaging(0.495) TCGA-L9-A8F4-01 19 51135641 51135641 C T SYT3 Silent p.G192G 0.20 TCGA-L9-A8F4-01 19 51411733 51411733 A C KLK4 Missense_Mutation p.L165R 0.26 deleterious(0.04) probably_damaging(1) TCGA-L9-A8F4-01 19 51466655 51466655 G T KLK6 Silent p.A116A 0.10 TCGA-L9-A8F4-01 19 52023400 52023400 T A SIGLEC6 Missense_Mutation p.K433M 0.19 tolerated(0.08) benign(0.154) TCGA-L9-A8F4-01 19 52728993 52728993 C A PPP2R1A Missense_Mutation p.P562H 0.11 deleterious(0.01) possibly_damaging(0.843) TCGA-L9-A8F4-01 19 53014861 53014861 T C ZNF578 Silent p.N409N 0.13 TCGA-L9-A8F4-01 19 53571686 53571686 C A ZNF160 Nonsense_Mutation p.G701* 0.17 TCGA-L9-A8F4-01 19 53611794 53611794 C A ZNF415 Missense_Mutation p.G502C 0.21 deleterious(0) probably_damaging(0.996) TCGA-L9-A8F4-01 19 53741033 53741033 T C ZNF677 Missense_Mutation p.E316G 0.14 tolerated(0.05) probably_damaging(0.997) TCGA-L9-A8F4-01 19 53994393 53994393 G C ZNF813 Missense_Mutation p.E303Q 0.23 deleterious(0.05) probably_damaging(0.913) TCGA-L9-A8F4-01 19 54172411 54172411 G T MIR512-2 RNA 0.13 TCGA-L9-A8F4-01 19 54240097 54240097 T C RNU6-980P 5'Flank 0.45 TCGA-L9-A8F4-01 19 54395039 54395039 C A PRKCG Missense_Mutation p.T214K 0.17 deleterious(0.04) benign(0.031) TCGA-L9-A8F4-01 19 54758778 54758778 C G LILRB5 Missense_Mutation p.G359R 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-L9-A8F4-01 19 55085853 55085853 C A LILRA2 Missense_Mutation p.S52R 0.40 deleterious(0.02) benign(0.019) TCGA-L9-A8F4-01 19 55106233 55106233 C A LILRA1 Nonsense_Mutation p.Y58* 0.14 TCGA-L9-A8F4-01 19 55174433 55174433 C T LILRB4 5'UTR 0.42 TCGA-L9-A8F4-01 19 55424189 55424189 A G NCR1 Missense_Mutation p.R289G 0.30 tolerated(0.11) benign(0.015) TCGA-L9-A8F4-01 19 55508828 55508828 G A NLRP2 Missense_Mutation p.C1008Y 0.19 tolerated(1) benign(0) TCGA-L9-A8F4-01 19 55823303 55823303 G T BRSK1 Missense_Mutation p.R735L 0.14 tolerated_low_confidence(0.16) possibly_damaging(0.688) TCGA-L9-A8F4-01 19 55857894 55857894 G C SUV420H2 Missense_Mutation p.R245T 0.30 deleterious(0.05) benign(0.051) TCGA-L9-A8F4-01 19 55889191 55889191 T G TMEM190 Missense_Mutation p.M81R 0.42 deleterious(0) benign(0.402) TCGA-L9-A8F4-01 19 57293327 57293327 A T ZIM2 Missense_Mutation p.S214T 0.12 tolerated(0.06) possibly_damaging(0.752) TCGA-L9-A8F4-01 19 58578710 58578710 C A ZNF135 Silent p.I310I 0.35 TCGA-L9-A8F4-01 19 58640843 58640843 A G ZNF329 Missense_Mutation p.F10L 0.37 tolerated(0.07) benign(0) TCGA-L9-A8F4-01 19 58773949 58773949 T A ZNF544 Silent p.P659P 0.11 TCGA-L9-A8F4-01 19 6496225 6496225 G A TUBB4A Silent p.S95S 0.30 TCGA-L9-A8F4-01 19 6696396 6696396 G A C3 Silent p.L982L 0.30 TCGA-L9-A8F4-01 19 7163193 7163193 C A INSR Missense_Mutation p.D627Y 0.26 deleterious(0) probably_damaging(0.99) TCGA-L9-A8F4-01 19 8807780 8807780 C A ACTL9 3'UTR 0.17 TCGA-L9-A8F4-01 19 8931940 8931941 - A ZNF558 Frame_Shift_Ins p.E55* 0.17 TCGA-L9-A8F4-01 19 9060752 9060752 C G MUC16 Missense_Mutation p.L8898F 0.31 unknown(0) TCGA-L9-A8F4-01 19 9089657 9089657 T C MUC16 Missense_Mutation p.I720V 0.13 unknown(0) TCGA-L9-A8F4-01 1 100575922 100575922 C A SASS6 Missense_Mutation p.D263Y 0.19 deleterious(0) probably_damaging(0.94) TCGA-L9-A8F4-01 1 101188699 101188699 G T VCAM1 Missense_Mutation p.G155V 0.16 deleterious(0.01) probably_damaging(0.971) TCGA-L9-A8F4-01 1 10386167 10386167 A G KIF1B Splice_Site p.X846_splice 0.20 TCGA-L9-A8F4-01 1 10720588 10720588 C T CASZ1 Missense_Mutation p.A171T 0.29 tolerated_low_confidence(0.06) benign(0.108) TCGA-L9-A8F4-01 1 11298633 11298633 A G MTOR Missense_Mutation p.F610L 0.09 tolerated(0.05) benign(0.217) TCGA-L9-A8F4-01 1 14108979 14108979 G T PRDM2 Silent p.V1563V 0.28 TCGA-L9-A8F4-01 1 149905376 149905376 A T MTMR11 Missense_Mutation p.V303E 0.23 deleterious(0) probably_damaging(0.998) TCGA-L9-A8F4-01 1 152128833 152128833 G T RPTN Missense_Mutation p.Q248K 0.19 deleterious(0.02) benign(0.41) TCGA-L9-A8F4-01 1 152187673 152187673 A G HRNR Silent p.S2144S 0.03 TCGA-L9-A8F4-01 1 152187848 152187848 G C HRNR Missense_Mutation p.S2086C 0.04 unknown(0) TCGA-L9-A8F4-01 1 152191897 152191897 T G HRNR Silent p.S736S 0.13 TCGA-L9-A8F4-01 1 152285664 152285664 A T FLG Missense_Mutation p.S566R 0.17 probably_damaging(0.987) TCGA-L9-A8F4-01 1 152484375 152484375 C A LCE5A 3'UTR 0.21 TCGA-L9-A8F4-01 1 152958061 152958061 A T SPRR1A 3'UTR 0.38 TCGA-L9-A8F4-01 1 156376950 156376950 G T C1orf61 Silent p.S115S 0.28 TCGA-L9-A8F4-01 1 157738268 157738268 A G FCRL2 Silent p.Y273Y 0.23 TCGA-L9-A8F4-01 1 157765775 157765775 T G FCRL1 3'UTR 0.18 TCGA-L9-A8F4-01 1 158450183 158450183 C A OR10R2 Silent p.G172G 0.14 TCGA-L9-A8F4-01 1 158516949 158516949 C A OR6Y1 Missense_Mutation p.G316V 0.16 tolerated(0.55) benign(0.001) TCGA-L9-A8F4-01 1 158746916 158746916 A T OR6N2 Silent p.A170A 0.13 TCGA-L9-A8F4-01 1 159284029 159284029 C A OR10J3 Missense_Mutation p.A141S 0.11 tolerated(0.06) benign(0.038) TCGA-L9-A8F4-01 1 159284030 159284030 C A OR10J3 Missense_Mutation p.R140S 0.10 tolerated(0.19) benign(0.05) TCGA-L9-A8F4-01 1 159890222 159890222 C T TAGLN2 Silent p.L26L 0.19 TCGA-L9-A8F4-01 1 160064989 160064989 A T IGSF8 Missense_Mutation p.Y38N 0.26 deleterious(0) probably_damaging(0.999) TCGA-L9-A8F4-01 1 160109502 160109502 G A ATP1A2 Missense_Mutation p.M971I 0.11 tolerated(0.05) benign(0.115) TCGA-L9-A8F4-01 1 160144492 160144492 C G ATP1A4 Missense_Mutation p.L756V 0.21 deleterious(0) probably_damaging(0.984) TCGA-L9-A8F4-01 1 161681880 161681880 G T FCRLA Missense_Mutation p.R242M 0.11 tolerated(0.13) probably_damaging(0.928) TCGA-L9-A8F4-01 1 161953827 161953827 G T OLFML2B Missense_Mutation p.L631I 0.13 tolerated(0.6) benign(0.361) TCGA-L9-A8F4-01 1 165378835 165378835 T A RXRG Missense_Mutation p.S336C 0.21 deleterious(0) probably_damaging(0.998) TCGA-L9-A8F4-01 1 167025039 167025039 C A GPA33 Missense_Mutation p.G207C 0.20 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 1 168074010 168074010 T A GPR161 Missense_Mutation p.I47F 0.29 tolerated(0.18) benign(0.043) TCGA-L9-A8F4-01 1 168683470 168683470 T A DPT Silent p.P140P 0.27 TCGA-L9-A8F4-01 1 169267907 169267907 C A NME7 Missense_Mutation p.A179S 0.13 tolerated(0.31) benign(0.012) TCGA-L9-A8F4-01 1 170964610 170964610 G T MROH9 Silent p.T425T 0.13 TCGA-L9-A8F4-01 1 179603612 179603612 G T TDRD5 Nonsense_Mutation p.E383* 0.20 TCGA-L9-A8F4-01 1 182025622 182025622 C G ZNF648 Missense_Mutation p.E508D 0.38 tolerated(0.42) benign(0.261) TCGA-L9-A8F4-01 1 183230436 183230436 C T NMNAT2 Missense_Mutation p.M218I 0.09 tolerated(1) benign(0.192) TCGA-L9-A8F4-01 1 186280206 186280206 T A PRG4 Silent p.S1180S 0.21 TCGA-L9-A8F4-01 1 196311322 196311322 C A KCNT2 Missense_Mutation p.M480I 0.18 tolerated(0.3) benign(0.002) TCGA-L9-A8F4-01 1 200014698 200014698 G T NR5A2 Missense_Mutation p.G150V 0.14 deleterious(0) probably_damaging(0.986) TCGA-L9-A8F4-01 1 20005444 20005444 C G HTR6 Missense_Mutation p.F302L 0.11 deleterious(0) possibly_damaging(0.759) TCGA-L9-A8F4-01 1 201839929 201839929 G C IPO9 Missense_Mutation p.Q784H 0.28 deleterious(0.01) benign(0.004) TCGA-L9-A8F4-01 1 202549699 202549699 A G PPP1R12B 3'UTR 0.19 TCGA-L9-A8F4-01 1 207758045 207758045 C A CR1 Missense_Mutation p.T1785N 0.15 tolerated(0.51) benign(0.022) TCGA-L9-A8F4-01 1 208202323 208202323 C A PLXNA2 Missense_Mutation p.G1764C 0.22 deleterious(0) probably_damaging(0.951) TCGA-L9-A8F4-01 1 209878280 209878280 C T HSD11B1 5'UTR 0.17 TCGA-L9-A8F4-01 1 21133940 21133940 C T EIF4G3 Missense_Mutation p.D1550N 0.28 deleterious(0) probably_damaging(0.99) TCGA-L9-A8F4-01 1 214170144 214170144 G T PROX1 Missense_Mutation p.G89V 0.23 deleterious(0) probably_damaging(0.999) TCGA-L9-A8F4-01 1 216062230 216062230 C G USH2A Silent p.V2587V 0.10 TCGA-L9-A8F4-01 1 216062261 216062261 C G USH2A Missense_Mutation p.R2577T 0.11 benign(0.001) TCGA-L9-A8F4-01 1 220156686 220156686 G C EPRS Missense_Mutation p.L1049V 0.26 deleterious(0) probably_damaging(0.938) TCGA-L9-A8F4-01 1 220752748 220752748 G A MARK1 Missense_Mutation p.S35N 0.25 deleterious(0) benign(0.205) TCGA-L9-A8F4-01 1 226822349 226822349 G T ITPKB 3'UTR 0.14 TCGA-L9-A8F4-01 1 231935886 231935886 G T DISC1 Silent p.L574L 0.20 TCGA-L9-A8F4-01 1 231954224 231954224 A T DISC1 Nonsense_Mutation p.R648* 0.10 TCGA-L9-A8F4-01 1 237753196 237753196 G T RYR2 Missense_Mutation p.E1234D 0.17 benign(0.422) TCGA-L9-A8F4-01 1 237788985 237788985 C T RYR2 Missense_Mutation p.S2016F 0.15 benign(0.104) TCGA-L9-A8F4-01 1 238053382 238053382 G T ZP4 Silent p.T90T 0.27 TCGA-L9-A8F4-01 1 240255908 240255908 G T FMN2 Missense_Mutation p.A167S 0.24 unknown(0) TCGA-L9-A8F4-01 1 2411657 2411658 - C PLCH2 Frame_Shift_Ins p.G158Rfs*37 0.17 TCGA-L9-A8F4-01 1 24424469 24424469 A G MYOM3 Missense_Mutation p.V230A 0.18 tolerated(0.95) benign(0.414) TCGA-L9-A8F4-01 1 246903601 246903601 A G SCCPDH Missense_Mutation p.N171S 0.25 tolerated(0.41) benign(0.009) TCGA-L9-A8F4-01 1 247065950 247065950 T C AHCTF1 Missense_Mutation p.T341A 0.16 deleterious(0.02) possibly_damaging(0.452) TCGA-L9-A8F4-01 1 247588891 247588891 T A NLRP3 Missense_Mutation p.C716S 0.23 tolerated(0.23) benign(0.006) TCGA-L9-A8F4-01 1 247769207 247769207 T A OR2G3 Missense_Mutation p.L107Q 0.13 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 1 247875831 247875831 G T OR6F1 Missense_Mutation p.A76E 0.16 deleterious(0.01) probably_damaging(0.935) TCGA-L9-A8F4-01 1 247902207 247902207 G T OR14K1 Missense_Mutation p.L97F 0.17 tolerated(0.48) benign(0.005) TCGA-L9-A8F4-01 1 248059426 248059426 G C OR2W3 Missense_Mutation p.E180Q 0.23 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 1 248343522 248343522 C T OR2M2 Missense_Mutation p.P79S 0.27 deleterious(0) probably_damaging(0.931) TCGA-L9-A8F4-01 1 248436861 248436861 C A OR2T33 Nonsense_Mutation p.G86* 0.16 TCGA-L9-A8F4-01 1 248458065 248458065 C A OR2T12 Silent p.V272V 0.10 TCGA-L9-A8F4-01 1 29189260 29189260 C A OPRD1 Missense_Mutation p.A195E 0.12 tolerated(0.69) benign(0.038) TCGA-L9-A8F4-01 1 34042909 34042909 G T CSMD2 Silent p.I2523I 0.16 TCGA-L9-A8F4-01 1 39838272 39838272 A G MACF1 Intron 0.26 TCGA-L9-A8F4-01 1 44386130 44386130 C T ST3GAL3 Missense_Mutation p.P336S 0.10 tolerated(0.69) benign(0.022) TCGA-L9-A8F4-01 1 45224942 45224942 A T KIF2C Missense_Mutation p.Q430L 0.09 deleterious(0) probably_damaging(0.988) TCGA-L9-A8F4-01 1 51831687 51831687 C A EPS15 Missense_Mutation p.A712S 0.10 tolerated(0.3) benign(0.169) TCGA-L9-A8F4-01 1 53287260 53287260 C T ZYG11B Missense_Mutation p.P732S 0.22 tolerated(0.16) probably_damaging(0.996) TCGA-L9-A8F4-01 1 6525564 6525564 C G TNFRSF25 Missense_Mutation p.R32S 0.15 tolerated(0.1) benign(0.096) TCGA-L9-A8F4-01 1 66384459 66384459 G T PDE4B Silent p.P74P 0.22 TCGA-L9-A8F4-01 1 67724344 67724344 G A IL23R Missense_Mutation p.V475I 0.26 tolerated(0.21) possibly_damaging(0.621) TCGA-L9-A8F4-01 1 70504663 70504664 GG A LRRC7 Frame_Shift_Del p.P1016Hfs*8 0.10 TCGA-L9-A8F4-01 1 75038467 75038467 C T C1orf173 Missense_Mutation p.G976E 0.19 tolerated(0.11) possibly_damaging(0.9) TCGA-L9-A8F4-01 1 75608920 75608920 G T LHX8 Missense_Mutation p.R169S 0.16 deleterious(0) probably_damaging(0.999) TCGA-L9-A8F4-01 1 75702712 75702712 C T SLC44A5 Missense_Mutation p.V234M 0.26 deleterious(0.01) benign(0.403) TCGA-L9-A8F4-01 1 78392295 78392295 T C NEXN Missense_Mutation p.M229T 0.13 tolerated(0.67) benign(0.004) TCGA-L9-A8F4-01 1 85406654 85406654 C T MCOLN2 Missense_Mutation p.V290I 0.17 tolerated(0.74) benign(0.003) TCGA-L9-A8F4-01 1 85656355 85656355 G A SYDE2 Missense_Mutation p.H276Y 0.16 tolerated_low_confidence(0.06) benign(0.001) TCGA-L9-A8F4-01 1 91733341 91733341 T C HFM1 Missense_Mutation p.T1282A 0.17 tolerated_low_confidence(0.51) benign(0.002) TCGA-L9-A8F4-01 1 98164927 98164927 T C DPYD Silent p.Q220Q 0.15 TCGA-L9-A8F4-01 20 1961533 1961533 A T PDYN Silent p.S67S 0.15 TCGA-L9-A8F4-01 20 20036641 20036641 C T CRNKL1 Silent p.E6E 0.07 TCGA-L9-A8F4-01 20 21492625 21492625 G T NKX2-2 Nonsense_Mutation p.S253* 0.17 TCGA-L9-A8F4-01 20 23066071 23066071 C T CD93 Silent p.S253S 0.33 TCGA-L9-A8F4-01 20 2312705 2312705 C A TGM3 Missense_Mutation p.T464K 0.19 tolerated(0.91) benign(0.001) TCGA-L9-A8F4-01 20 31022745 31022745 G T ASXL1 Nonsense_Mutation p.G744* 0.17 TCGA-L9-A8F4-01 20 31601634 31601634 G T BPIFB2 Missense_Mutation p.E109D 0.11 tolerated(0.3) possibly_damaging(0.761) TCGA-L9-A8F4-01 20 3211800 3211800 G A SLC4A11 Missense_Mutation p.T389I 0.06 tolerated(0.11) probably_damaging(0.988) TCGA-L9-A8F4-01 20 32194848 32194848 C T CBFA2T2 Missense_Mutation p.P50S 0.22 tolerated(0.1) probably_damaging(1) TCGA-L9-A8F4-01 20 32664960 32664960 C A RALY Missense_Mutation p.T262K 0.17 deleterious_low_confidence(0.05) benign(0.185) TCGA-L9-A8F4-01 20 33320399 33320399 T A NCOA6 Missense_Mutation p.E1988V 0.15 probably_damaging(0.968) TCGA-L9-A8F4-01 20 33764163 33764164 AC T PROCR Frame_Shift_Del p.N172Ifs*56 0.15 TCGA-L9-A8F4-01 20 34021977 34021977 C T GDF5 Missense_Mutation p.M412I 0.13 deleterious(0) benign(0.036) TCGA-L9-A8F4-01 20 34025219 34025219 G T GDF5 Missense_Mutation p.P164T 0.35 tolerated(0.53) probably_damaging(0.995) TCGA-L9-A8F4-01 20 35125201 35125201 G T DLGAP4 Missense_Mutation p.S581I 0.15 deleterious(0) probably_damaging(0.999) TCGA-L9-A8F4-01 20 35812638 35812638 G T RPN2 Silent p.L23L 0.10 TCGA-L9-A8F4-01 20 3683877 3683877 C A SIGLEC1 Nonsense_Mutation p.E399* 0.18 TCGA-L9-A8F4-01 20 3686650 3686650 C A SIGLEC1 Missense_Mutation p.E149D 0.22 tolerated(0.37) benign(0.03) TCGA-L9-A8F4-01 20 3732749 3732749 T A HSPA12B Missense_Mutation p.V666D 0.18 deleterious(0) probably_damaging(0.988) TCGA-L9-A8F4-01 20 39317335 39317335 G T MAFB Silent p.A52A 0.22 TCGA-L9-A8F4-01 20 44505912 44505912 G C ZSWIM3 Missense_Mutation p.V239L 0.09 tolerated(0.07) probably_damaging(0.998) TCGA-L9-A8F4-01 20 44680417 44680417 G T SLC12A5 Missense_Mutation p.G785V 0.13 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 20 45130371 45130371 T C ZNF334 Missense_Mutation p.Q536R 0.30 tolerated(0.49) benign(0.001) TCGA-L9-A8F4-01 20 46311854 46311854 G T SULF2 Silent p.A316A 0.22 TCGA-L9-A8F4-01 20 49620954 49620954 G A KCNG1 Silent p.I388I 0.38 TCGA-L9-A8F4-01 20 49626220 49626220 C G KCNG1 Missense_Mutation p.R219T 0.33 deleterious(0.03) benign(0.064) TCGA-L9-A8F4-01 20 56137940 56137940 C T PCK1 Missense_Mutation p.P199S 0.11 deleterious(0) possibly_damaging(0.699) TCGA-L9-A8F4-01 20 60906138 60906138 C A LAMA5 Silent p.V1200V 0.28 TCGA-L9-A8F4-01 20 61473242 61473242 C A TCFL5 3'UTR 0.12 TCGA-L9-A8F4-01 20 61512546 61512546 C G DIDO1 Missense_Mutation p.G1588R 0.10 benign(0.23) TCGA-L9-A8F4-01 20 62374348 62374348 G T SLC2A4RG 3'UTR 0.50 TCGA-L9-A8F4-01 20 7894839 7894839 T A HAO1 Missense_Mutation p.N173Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-L9-A8F4-01 21 22849696 22849696 G T NCAM2 Missense_Mutation p.G661W 0.09 deleterious(0) probably_damaging(0.99) TCGA-L9-A8F4-01 21 28338401 28338401 G T ADAMTS5 Silent p.R104R 0.10 TCGA-L9-A8F4-01 21 30715159 30715159 G T BACH1 3'UTR 0.16 TCGA-L9-A8F4-01 21 30949485 30949485 G T GRIK1 Silent p.P643P 0.10 TCGA-L9-A8F4-01 21 31964796 31964796 G T KRTAP6-3 Missense_Mutation p.S4I 0.20 unknown(0) TCGA-L9-A8F4-01 21 31964838 31964838 G T KRTAP6-3 Missense_Mutation p.C18F 0.20 unknown(0) TCGA-L9-A8F4-01 21 32524953 32524953 C A TIAM1 Splice_Site p.X1122_splice 0.26 TCGA-L9-A8F4-01 21 35468164 35468164 G A SLC5A3 Missense_Mutation p.D223N 0.17 tolerated(1) benign(0) TCGA-L9-A8F4-01 21 37572785 37572785 C T DOPEY2 Silent p.S159S 0.08 TCGA-L9-A8F4-01 21 46047911 46047911 G C KRTAP10-9 Missense_Mutation p.V275L 0.06 tolerated(0.11) benign(0.141) TCGA-L9-A8F4-01 22 16449044 16449044 G C OR11H1 Missense_Mutation p.S254C 0.30 deleterious(0) probably_damaging(0.992) TCGA-L9-A8F4-01 22 20024413 20024413 G C TANGO2 Intron 0.16 TCGA-L9-A8F4-01 22 20077608 20077608 C A DGCR8 Missense_Mutation p.P378H 0.13 deleterious(0.01) benign(0.401) TCGA-L9-A8F4-01 22 21988776 21988776 G T CCDC116 Missense_Mutation p.A180S 0.15 tolerated(0.21) benign(0.222) TCGA-L9-A8F4-01 22 22324736 22324736 C A TOP3B Missense_Mutation p.G143C 0.19 deleterious(0.02) possibly_damaging(0.563) TCGA-L9-A8F4-01 22 29169717 29169718 TC - CCDC117 Frame_Shift_Del p.S64Cfs*4 0.17 TCGA-L9-A8F4-01 22 36055321 36055321 G T APOL6 Missense_Mutation p.G237V 0.35 deleterious(0.01) possibly_damaging(0.491) TCGA-L9-A8F4-01 22 41537055 41537055 G C EP300 Missense_Mutation p.E628Q 0.29 unknown(0) TCGA-L9-A8F4-01 22 45939352 45939352 C G FBLN1 Missense_Mutation p.L423V 0.35 tolerated(0.38) benign(0) TCGA-L9-A8F4-01 22 50555696 50555696 G A MOV10L1 Missense_Mutation p.R457H 0.31 tolerated(0.13) benign(0.336) TCGA-L9-A8F4-01 22 50718151 50718151 C T PLXNB2 Missense_Mutation p.E1433K 0.36 deleterious(0) probably_damaging(0.999) TCGA-L9-A8F4-01 22 50720024 50720024 C T PLXNB2 Missense_Mutation p.D1165N 0.26 deleterious(0.03) probably_damaging(0.983) TCGA-L9-A8F4-01 22 51176735 51176735 G T ACR Silent p.T24T 0.27 TCGA-L9-A8F4-01 2 107446598 107446598 T A ST6GAL2 Silent p.I414I 0.11 TCGA-L9-A8F4-01 2 112847280 112847280 G T TMEM87B Silent p.V339V 0.13 TCGA-L9-A8F4-01 2 130831809 130831809 G T POTEF 3'UTR 0.16 TCGA-L9-A8F4-01 2 130831816 130831816 C A POTEF 3'UTR 0.17 TCGA-L9-A8F4-01 2 133543015 133543015 G A NCKAP5 Silent p.L457L 0.20 TCGA-L9-A8F4-01 2 133887548 133887548 A T NCKAP5 Splice_Site p.X114_splice 0.32 TCGA-L9-A8F4-01 2 141004723 141004723 G A LRP1B Missense_Mutation p.T4419I 0.24 possibly_damaging(0.507) TCGA-L9-A8F4-01 2 141243061 141243061 A T LRP1B Silent p.L3092L 0.11 TCGA-L9-A8F4-01 2 141528464 141528464 C T LRP1B Missense_Mutation p.R1871H 0.14 possibly_damaging(0.522) TCGA-L9-A8F4-01 2 141773486 141773486 T A LRP1B Splice_Site p.X657_splice 0.15 TCGA-L9-A8F4-01 2 1437233 1437233 T A TPO Missense_Mutation p.L68H 0.33 tolerated(0.55) benign(0.416) TCGA-L9-A8F4-01 2 145187498 145187498 C G ZEB2 Missense_Mutation p.D57H 0.17 deleterious(0.01) possibly_damaging(0.707) TCGA-L9-A8F4-01 2 153530214 153530214 A G PRPF40A Silent p.T346T 0.17 TCGA-L9-A8F4-01 2 158991296 158991296 A G UPP2 Missense_Mutation p.D340G 0.27 deleterious(0.05) benign(0.128) TCGA-L9-A8F4-01 2 160092552 160092552 G C WDSUB1 Missense_Mutation p.Q475E 0.13 deleterious_low_confidence(0.04) benign(0.015) TCGA-L9-A8F4-01 2 160697293 160697293 C A LY75-CD302 Missense_Mutation p.V1152L 0.29 deleterious(0.01) possibly_damaging(0.893) TCGA-L9-A8F4-01 2 168098310 168098310 G C XIRP2 Missense_Mutation p.E356Q 0.27 probably_damaging(0.996) TCGA-L9-A8F4-01 2 178534229 178534229 T A PDE11A Missense_Mutation p.T852S 0.13 tolerated(0.08) benign(0.162) TCGA-L9-A8F4-01 2 179248858 179248858 T C OSBPL6 Silent p.Y681Y 0.23 TCGA-L9-A8F4-01 2 179414966 179414966 A T TTN Missense_Mutation p.F30533L 0.19 TCGA-L9-A8F4-01 2 179425064 179425064 G C TTN Missense_Mutation p.R28599G 0.19 TCGA-L9-A8F4-01 2 179465800 179465800 C A TTN Missense_Mutation p.V18611F 0.24 TCGA-L9-A8F4-01 2 179600480 179600480 T A TTN Missense_Mutation p.Q4898L 0.24 TCGA-L9-A8F4-01 2 179629360 179629360 G T TTN Nonsense_Mutation p.Y3294* 0.20 TCGA-L9-A8F4-01 2 182423373 182423373 G T CERKL Missense_Mutation p.A273D 0.18 deleterious(0) probably_damaging(0.983) TCGA-L9-A8F4-01 2 185802325 185802325 G T ZNF804A Missense_Mutation p.Q734H 0.29 tolerated(0.16) benign(0) TCGA-L9-A8F4-01 2 185802924 185802924 T A ZNF804A Missense_Mutation p.L934H 0.32 tolerated(0.26) probably_damaging(0.993) TCGA-L9-A8F4-01 2 191848437 191848439 GGA - STAT1 In_Frame_Del p.S459del 0.36 TCGA-L9-A8F4-01 2 197707510 197707510 C A PGAP1 Missense_Mutation p.L855F 0.23 tolerated(0.65) possibly_damaging(0.512) TCGA-L9-A8F4-01 2 197860124 197860124 T C ANKRD44 Missense_Mutation p.E912G 0.21 deleterious(0.02) benign(0.029) TCGA-L9-A8F4-01 2 210560969 210560969 G A MAP2 Missense_Mutation p.V1359I 0.32 tolerated(0.69) benign(0.019) TCGA-L9-A8F4-01 2 211069313 211069313 G T ACADL Missense_Mutation p.L288I 0.36 deleterious(0) probably_damaging(0.96) TCGA-L9-A8F4-01 2 230253098 230253098 T G DNER Missense_Mutation p.I580L 0.22 tolerated(0.05) benign(0.005) TCGA-L9-A8F4-01 2 238681557 238681557 C G LRRFIP1 Missense_Mutation p.S559C 0.07 tolerated(0.1) benign(0.316) TCGA-L9-A8F4-01 2 27354942 27354942 C A PREB Missense_Mutation p.G312V 0.12 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 2 27354943 27354943 C A PREB Missense_Mutation p.G312C 0.12 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 2 27886665 27886665 T C SLC4A1AP Missense_Mutation p.S16P 0.10 tolerated_low_confidence(0.48) benign(0) TCGA-L9-A8F4-01 2 29498087 29498087 C A ALK Missense_Mutation p.G640V 0.25 deleterious(0.01) possibly_damaging(0.632) TCGA-L9-A8F4-01 2 31189105 31189105 G T GALNT14 Missense_Mutation p.N126K 0.17 deleterious(0) probably_damaging(0.995) TCGA-L9-A8F4-01 2 42720313 42720313 T A KCNG3 Missense_Mutation p.Y110F 0.38 tolerated(0.69) benign(0.006) TCGA-L9-A8F4-01 2 47301049 47301049 C T TTC7A Missense_Mutation p.P855L 0.27 deleterious(0) probably_damaging(0.947) TCGA-L9-A8F4-01 2 48010482 48010482 C T MSH6 Missense_Mutation p.A37V 0.22 tolerated(0.32) benign(0) TCGA-L9-A8F4-01 2 48896973 48896973 C A STON1-GTF2A1L Missense_Mutation p.T1068K 0.39 tolerated(0.42) benign(0.016) TCGA-L9-A8F4-01 2 54880836 54880836 C T SPTBN1 Silent p.L1890L 0.28 TCGA-L9-A8F4-01 2 55490896 55490896 C A MTIF2 Missense_Mutation p.W33C 0.23 deleterious_low_confidence(0.03) benign(0.033) TCGA-L9-A8F4-01 2 55490897 55490897 C T MTIF2 Nonsense_Mutation p.W33* 0.23 TCGA-L9-A8F4-01 2 61180159 61180159 T A PUS10 Missense_Mutation p.K427N 0.10 tolerated(0.24) benign(0.002) TCGA-L9-A8F4-01 2 63272647 63272647 G T EHBP1 3'UTR 0.17 TCGA-L9-A8F4-01 2 68480203 68480203 G A PPP3R1 5'Flank 0.22 TCGA-L9-A8F4-01 2 77745587 77745587 C A LRRTM4 Missense_Mutation p.A470S 0.16 tolerated(0.64) benign(0.047) TCGA-L9-A8F4-01 2 80096984 80096984 C A CTNNA2 Missense_Mutation p.Q170K 0.19 tolerated(0.68) benign(0.009) TCGA-L9-A8F4-01 2 80831284 80831284 G C CTNNA2 Missense_Mutation p.A759P 0.15 deleterious(0.01) possibly_damaging(0.888) TCGA-L9-A8F4-01 2 8926021 8926021 G A KIDINS220 Silent p.L693L 0.21 TCGA-L9-A8F4-01 2 89476609 89476609 C A IGKV2-24 Missense_Mutation p.R2S 0.15 deleterious(0.01) probably_damaging(1) TCGA-L9-A8F4-01 2 90078190 90078190 C A IGKV3D-20 Missense_Mutation p.A76D 0.11 tolerated(0.24) possibly_damaging(0.581) TCGA-L9-A8F4-01 2 95770407 95770407 C G MRPS5 Silent p.V247V 0.15 TCGA-L9-A8F4-01 3 101572000 101572000 G T NFKBIZ Missense_Mutation p.Q210H 0.14 tolerated_low_confidence(0.55) benign(0.001) TCGA-L9-A8F4-01 3 105252472 105252472 G T ALCAM Missense_Mutation p.S162I 0.23 deleterious(0.01) possibly_damaging(0.616) TCGA-L9-A8F4-01 3 107524311 107524311 C T BBX 3'UTR 0.07 TCGA-L9-A8F4-01 3 108330135 108330135 A T DZIP3 Nonsense_Mutation p.K73* 0.21 TCGA-L9-A8F4-01 3 113376951 113376951 G T KIAA2018 Missense_Mutation p.P1193Q 0.11 benign(0.265) TCGA-L9-A8F4-01 3 113775361 113775361 T C KIAA1407 5'UTR 0.10 TCGA-L9-A8F4-01 3 115395340 115395340 C A GAP43 Missense_Mutation p.P207T 0.27 deleterious(0) probably_damaging(0.998) TCGA-L9-A8F4-01 3 118621605 118621605 T A IGSF11 Missense_Mutation p.N353I 0.17 tolerated(0.12) benign(0.001) TCGA-L9-A8F4-01 3 119120823 119120823 G T ARHGAP31 Missense_Mutation p.E408D 0.21 tolerated(0.08) benign(0.358) TCGA-L9-A8F4-01 3 123039598 123039598 G A ADCY5 Silent p.D703D 0.45 TCGA-L9-A8F4-01 3 124438258 124438258 G C RP11-71H17.7 5'Flank 0.38 TCGA-L9-A8F4-01 3 124952769 124952769 T A ZNF148 Silent p.T267T 0.09 TCGA-L9-A8F4-01 3 125850346 125850346 C A ALDH1L1 Nonsense_Mutation p.E512* 0.25 TCGA-L9-A8F4-01 3 126708353 126708353 G T PLXNA1 Missense_Mutation p.G306V 0.31 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 3 12858665 12858665 G T CAND2 Missense_Mutation p.R745L 0.14 tolerated(0.08) benign(0.049) TCGA-L9-A8F4-01 3 128621414 128621414 A T ACAD9 Missense_Mutation p.N301Y 0.41 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 3 128712102 128712102 C A KIAA1257 Nonsense_Mutation p.E16* 0.21 TCGA-L9-A8F4-01 3 130290028 130290028 C A COL6A6 Missense_Mutation p.S923Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-L9-A8F4-01 3 130311457 130311457 G T COL6A6 Splice_Site p.X1448_splice 0.13 TCGA-L9-A8F4-01 3 133327442 133327442 T C TOPBP1 Silent p.A1454A 0.18 TCGA-L9-A8F4-01 3 13364836 13364836 C G NUP210 Missense_Mutation p.V1581L 0.20 tolerated(0.18) benign(0.001) TCGA-L9-A8F4-01 3 13368732 13368732 G A NUP210 Silent p.L1498L 0.21 TCGA-L9-A8F4-01 3 134967252 134967252 A G EPHB1 Missense_Mutation p.D864G 0.07 deleterious(0.04) possibly_damaging(0.896) TCGA-L9-A8F4-01 3 134968281 134968281 T G EPHB1 Missense_Mutation p.F932V 0.07 deleterious(0) possibly_damaging(0.899) TCGA-L9-A8F4-01 3 137881045 137881045 C A DBR1 Missense_Mutation p.V441L 0.34 tolerated(0.51) benign(0.002) TCGA-L9-A8F4-01 3 139067066 139067066 G T MRPS22 Missense_Mutation p.R135L 0.11 deleterious(0) probably_damaging(0.998) TCGA-L9-A8F4-01 3 151165119 151165119 C A IGSF10 Missense_Mutation p.G884C 0.28 deleterious(0.01) possibly_damaging(0.635) TCGA-L9-A8F4-01 3 158980514 158980514 C A IQCJ Intron 0.21 TCGA-L9-A8F4-01 3 160804507 160804507 C T B3GALNT1 Silent p.R12R 0.17 TCGA-L9-A8F4-01 3 161221316 161221316 G A OTOL1 Silent p.V340V 0.39 TCGA-L9-A8F4-01 3 16306251 16306251 C A DPH3 Intron 0.28 TCGA-L9-A8F4-01 3 164786565 164786565 A T SI Missense_Mutation p.I143N 0.15 deleterious(0) possibly_damaging(0.862) TCGA-L9-A8F4-01 3 164906588 164906588 G T SLITRK3 Nonsense_Mutation p.Y677* 0.10 TCGA-L9-A8F4-01 3 169654173 169654173 C A SAMD7 Missense_Mutation p.T363K 0.19 deleterious(0) possibly_damaging(0.881) TCGA-L9-A8F4-01 3 171405281 171405281 C G PLD1 Missense_Mutation p.D545H 0.19 deleterious(0.03) benign(0.365) TCGA-L9-A8F4-01 3 172165994 172165994 G C GHSR Silent p.R70R 0.24 TCGA-L9-A8F4-01 3 172227093 172227093 G - TNFSF10 Frame_Shift_Del p.S111Ffs*3 0.18 TCGA-L9-A8F4-01 3 172631507 172631507 C G SPATA16 Missense_Mutation p.D511H 0.32 deleterious(0) probably_damaging(0.934) TCGA-L9-A8F4-01 3 178560595 178560595 C A KCNMB2 Missense_Mutation p.S193Y 0.12 tolerated(0.17) benign(0.003) TCGA-L9-A8F4-01 3 178961026 178961026 T A KCNMB3 Missense_Mutation p.N169I 0.18 tolerated(0.14) benign(0.038) TCGA-L9-A8F4-01 3 183961369 183961369 C G ALG3 Missense_Mutation p.V328L 0.21 tolerated(0.37) benign(0.003) TCGA-L9-A8F4-01 3 184045054 184045054 G C EIF4G1 Missense_Mutation p.R1167P 0.17 deleterious(0.03) possibly_damaging(0.852) TCGA-L9-A8F4-01 3 184100892 184100892 G A CHRD Nonsense_Mutation p.W385* 0.33 TCGA-L9-A8F4-01 3 184870689 184870689 T A C3orf70 5'UTR 0.36 TCGA-L9-A8F4-01 3 186274280 186274280 C A TBCCD1 Missense_Mutation p.W259C 0.26 tolerated(0.1) possibly_damaging(0.452) TCGA-L9-A8F4-01 3 187442823 187442823 T C BCL6 Missense_Mutation p.K628R 0.20 deleterious(0) probably_damaging(0.999) TCGA-L9-A8F4-01 3 187447224 187447224 C A BCL6 Silent p.L323L 0.36 TCGA-L9-A8F4-01 3 189711884 189711884 T A LEPREL1 Silent p.A274A 0.07 TCGA-L9-A8F4-01 3 193120654 193120654 C A ATP13A4 Splice_Site p.X1127_splice 0.21 TCGA-L9-A8F4-01 3 193156814 193156814 C A ATP13A4 Missense_Mutation p.G854W 0.15 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 3 194362822 194362822 C A LSG1 Missense_Mutation p.R651I 0.13 deleterious(0) probably_damaging(0.996) TCGA-L9-A8F4-01 3 194362893 194362893 C A LSG1 Silent p.A627A 0.37 TCGA-L9-A8F4-01 3 195517392 195517392 T G MUC4 Missense_Mutation p.L353F 0.05 unknown(0) TCGA-L9-A8F4-01 3 197803771 197803771 C G ANKRD18DP RNA 0.21 TCGA-L9-A8F4-01 3 20017589 20017589 A G RAB5A Silent p.A122A 0.38 TCGA-L9-A8F4-01 3 20215825 20215825 C A SGOL1 Missense_Mutation p.V400F 0.35 deleterious(0.01) possibly_damaging(0.671) TCGA-L9-A8F4-01 3 38595839 38595839 G T SCN5A Missense_Mutation p.L1582M 0.37 deleterious(0) probably_damaging(0.956) TCGA-L9-A8F4-01 3 38622535 38622535 G T SCN5A Missense_Mutation p.P1039T 0.32 tolerated(0.4) benign(0.182) TCGA-L9-A8F4-01 3 39110273 39110273 A T WDR48 Missense_Mutation p.S165C 0.16 tolerated(0.1) possibly_damaging(0.886) TCGA-L9-A8F4-01 3 46491448 46491448 A G LTF Missense_Mutation p.L318P 0.43 deleterious(0) probably_damaging(0.99) TCGA-L9-A8F4-01 3 46965103 46965103 C G CCDC12 Missense_Mutation p.E113D 0.50 tolerated(0.36) benign(0.043) TCGA-L9-A8F4-01 3 46965105 46965105 C T CCDC12 Missense_Mutation p.E113K 0.50 deleterious(0.04) benign(0.133) TCGA-L9-A8F4-01 3 4774899 4774899 G T ITPR1 Missense_Mutation p.G1768V 0.20 tolerated(0.32) benign(0.021) TCGA-L9-A8F4-01 3 51864773 51864773 C G IQCF3 Missense_Mutation p.P141A 0.35 tolerated(0.77) benign(0.002) TCGA-L9-A8F4-01 3 85775661 85775661 C T CADM2 Silent p.S10S 0.24 TCGA-L9-A8F4-01 3 8590426 8590426 A C LMCD1 Missense_Mutation p.K187T 0.27 deleterious(0.01) possibly_damaging(0.828) TCGA-L9-A8F4-01 3 93845334 93845334 A G NSUN3 Nonstop_Mutation p.*341Wext*16 0.12 TCGA-L9-A8F4-01 3 96963161 96963161 G T EPHA6 Intron 0.30 TCGA-L9-A8F4-01 3 97868586 97868586 A G OR5H14 Silent p.A119A 0.20 TCGA-L9-A8F4-01 3 98188687 98188687 C G OR5K1 Missense_Mutation p.N89K 0.19 deleterious(0.01) benign(0.022) TCGA-L9-A8F4-01 3 99513220 99513220 A G COL8A1 Missense_Mutation p.K159E 0.19 tolerated(0.13) unknown(0) TCGA-L9-A8F4-01 3 9962198 9962198 C T IL17RC Silent p.F234F 0.26 TCGA-L9-A8F4-01 4 108991854 108991854 G T LEF1 Missense_Mutation p.Q361K 0.22 tolerated(0.12) probably_damaging(0.996) TCGA-L9-A8F4-01 4 114294519 114294519 C A ANK2 Missense_Mutation p.Q3925K 0.27 benign(0.442) TCGA-L9-A8F4-01 4 115997975 115997975 G C NDST4 Missense_Mutation p.T73R 0.34 tolerated(0.54) benign(0.086) TCGA-L9-A8F4-01 4 126372525 126372525 G T FAT4 Missense_Mutation p.A3452S 0.27 possibly_damaging(0.601) TCGA-L9-A8F4-01 4 134073626 134073626 G A PCDH10 Silent p.A777A 0.31 TCGA-L9-A8F4-01 4 1360024 1360024 G C UVSSA Intron 0.12 TCGA-L9-A8F4-01 4 154548755 154548755 A T KIAA0922 Splice_Site p.X1375_splice 0.20 TCGA-L9-A8F4-01 4 156831190 156831190 C A TDO2 Missense_Mutation p.P149T 0.38 tolerated(0.19) benign(0.046) TCGA-L9-A8F4-01 4 169433288 169433288 G T PALLD Silent p.P211P 0.31 TCGA-L9-A8F4-01 4 17616319 17616319 C A MED28 Silent p.P14P 0.26 TCGA-L9-A8F4-01 4 184240812 184240812 G T CLDN22 Missense_Mutation p.A187D 0.28 deleterious(0.01) possibly_damaging(0.714) TCGA-L9-A8F4-01 4 187629165 187629165 A G FAT1 Missense_Mutation p.I606T 0.37 benign(0.011) TCGA-L9-A8F4-01 4 2272435 2272435 C A ZFYVE28 3'UTR 0.31 TCGA-L9-A8F4-01 4 26483482 26483482 G A CCKAR Silent p.I355I 0.29 TCGA-L9-A8F4-01 4 42895534 42895534 C G GRXCR1 Missense_Mutation p.A84G 0.33 tolerated(0.34) possibly_damaging(0.505) TCGA-L9-A8F4-01 4 46043132 46043132 G T GABRG1 Missense_Mutation p.T424K 0.21 tolerated(0.21) benign(0.084) TCGA-L9-A8F4-01 4 46314665 46314665 C T GABRA2 Missense_Mutation p.M108I 0.24 tolerated(0.38) benign(0.19) TCGA-L9-A8F4-01 4 65274913 65274916 TGAC - TECRL Frame_Shift_Del p.V52Nfs*27 0.30 TCGA-L9-A8F4-01 4 68964620 68964620 G T TMPRSS11F Missense_Mutation p.H50N 0.17 deleterious(0.01) benign(0.272) TCGA-L9-A8F4-01 4 69097045 69097045 C A TMPRSS11B Nonsense_Mutation p.G188* 0.27 TCGA-L9-A8F4-01 4 69536145 69536145 G - UGT2B15 Frame_Shift_Del p.N65Mfs*10 0.28 TCGA-L9-A8F4-01 4 74719033 74719033 C A PF4V1 5'UTR 0.23 TCGA-L9-A8F4-01 4 78527084 78527084 G A CXCL13 Splice_Site p.X22_splice 0.33 TCGA-L9-A8F4-01 4 83970342 83970342 G T COPS4 Missense_Mutation p.V60L 0.30 deleterious(0) possibly_damaging(0.646) TCGA-L9-A8F4-01 4 87643410 87643410 G C PTPN13 Missense_Mutation p.E477D 0.45 deleterious(0.03) benign(0.149) TCGA-L9-A8F4-01 5 101774447 101774447 C A SLCO6A1 Missense_Mutation p.V384L 0.10 tolerated(0.41) benign(0.027) TCGA-L9-A8F4-01 5 109178133 109178133 A C MAN2A1 Silent p.R891R 0.10 TCGA-L9-A8F4-01 5 118877735 118877735 C T HSD17B4 3'UTR 0.17 TCGA-L9-A8F4-01 5 126887481 126887481 T A PRRC1 Nonsense_Mutation p.L404* 0.25 TCGA-L9-A8F4-01 5 127510314 127510314 T A SLC12A2 Nonsense_Mutation p.L962* 0.15 TCGA-L9-A8F4-01 5 127607795 127607795 T A FBN2 Missense_Mutation p.D2619V 0.37 deleterious(0.03) benign(0.315) TCGA-L9-A8F4-01 5 131543518 131543518 C A P4HA2 Missense_Mutation p.Q321H 0.06 tolerated(0.53) benign(0.001) TCGA-L9-A8F4-01 5 132202694 132202694 C T UQCRQ Missense_Mutation p.R41C 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-L9-A8F4-01 5 133887879 133887879 C T JADE2 Silent p.A97A 0.22 TCGA-L9-A8F4-01 5 135583227 135583227 G A TRPC7 Silent p.A592A 0.16 TCGA-L9-A8F4-01 5 137721872 137721872 C T KDM3B Silent p.S314S 0.23 TCGA-L9-A8F4-01 5 138860887 138860887 C A TMEM173 Missense_Mutation p.G90C 0.37 deleterious(0.03) benign(0.264) TCGA-L9-A8F4-01 5 140175621 140175621 C - PCDHA2 Frame_Shift_Del p.I359Sfs*31 0.16 TCGA-L9-A8F4-01 5 140208286 140208286 G T PCDHA6 Nonsense_Mutation p.E204* 0.17 TCGA-L9-A8F4-01 5 140214801 140214801 T C PCDHA7 Missense_Mutation p.I278T 0.26 tolerated_low_confidence(0.76) benign(0.001) TCGA-L9-A8F4-01 5 140264194 140264194 G T PCDHA13 Missense_Mutation p.G781C 0.18 deleterious_low_confidence(0.02) benign(0.144) TCGA-L9-A8F4-01 5 140558527 140558527 A G PCDHB8 Silent p.L304L 0.08 TCGA-L9-A8F4-01 5 140731189 140731189 G T PCDHGB1 Silent p.V454V 0.09 TCGA-L9-A8F4-01 5 140764432 140764432 G T PCDHGA7 Missense_Mutation p.A656S 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.654) TCGA-L9-A8F4-01 5 141316922 141316922 G T KIAA0141 Missense_Mutation p.A437S 0.19 deleterious(0.03) possibly_damaging(0.546) TCGA-L9-A8F4-01 5 14687694 14687694 A G FAM105B Missense_Mutation p.D178G 0.08 tolerated(0.41) benign(0.002) TCGA-L9-A8F4-01 5 14746012 14746012 C A ANKH Silent p.T294T 0.19 TCGA-L9-A8F4-01 5 1474800 1474800 C A LPCAT1 Missense_Mutation p.E300D 0.11 tolerated(0.15) benign(0.005) TCGA-L9-A8F4-01 5 147480130 147480130 G T SPINK5 Missense_Mutation p.M402I 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-L9-A8F4-01 5 147793781 147793781 G A FBXO38 Missense_Mutation p.M392I 0.19 tolerated(0.27) benign(0.008) TCGA-L9-A8F4-01 5 148745541 148745541 G T PCYOX1L Silent p.S169S 0.28 TCGA-L9-A8F4-01 5 150276503 150276503 A G ZNF300 Missense_Mutation p.C116R 0.17 tolerated(0.46) benign(0.186) TCGA-L9-A8F4-01 5 150502514 150502514 C A ANXA6 Missense_Mutation p.Q399H 0.16 deleterious(0) probably_damaging(0.96) TCGA-L9-A8F4-01 5 150924937 150924937 G T FAT2 Silent p.T1917T 0.24 TCGA-L9-A8F4-01 5 150925684 150925684 C T FAT2 Silent p.E1668E 0.19 TCGA-L9-A8F4-01 5 156479611 156479611 C A HAVCR1 Missense_Mutation p.R145L 0.11 tolerated(0.38) unknown(0) TCGA-L9-A8F4-01 5 160030972 160030972 C A ATP10B Missense_Mutation p.Q1079H 0.22 deleterious(0) probably_damaging(0.999) TCGA-L9-A8F4-01 5 161128601 161128601 C A GABRA6 Missense_Mutation p.P395H 0.16 tolerated(0.22) benign(0.316) TCGA-L9-A8F4-01 5 161128602 161128602 C T GABRA6 Silent p.P395P 0.16 TCGA-L9-A8F4-01 5 16699672 16699672 C A MYO10 Missense_Mutation p.S1148I 0.10 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-L9-A8F4-01 5 177576758 177576758 C T NHP2 Missense_Mutation p.D140N 0.10 tolerated(0.11) benign(0.006) TCGA-L9-A8F4-01 5 26906901 26906901 G T CDH9 Missense_Mutation p.N190K 0.09 deleterious(0.03) benign(0.272) TCGA-L9-A8F4-01 5 26915837 26915837 C A CDH9 Nonsense_Mutation p.E142* 0.20 TCGA-L9-A8F4-01 5 32789821 32789821 G T AC026703.1 Missense_Mutation p.G105V 0.29 probably_damaging(0.979) TCGA-L9-A8F4-01 5 33467732 33467732 G T TARS Silent p.G730G 0.08 TCGA-L9-A8F4-01 5 33881418 33881418 C A ADAMTS12 Nonsense_Mutation p.E99* 0.44 TCGA-L9-A8F4-01 5 37016225 37016225 G T NIPBL Nonsense_Mutation p.E1577* 0.12 TCGA-L9-A8F4-01 5 37049273 37049273 G C NIPBL Missense_Mutation p.S2275T 0.11 deleterious(0.01) probably_damaging(0.99) TCGA-L9-A8F4-01 5 37107720 37107720 C A C5orf42 Missense_Mutation p.W3193L 0.68 deleterious_low_confidence(0.04) benign(0.009) TCGA-L9-A8F4-01 5 38407935 38407935 T A EGFLAM Missense_Mutation p.F392L 0.12 tolerated(0.34) benign(0.04) TCGA-L9-A8F4-01 5 39202248 39202248 C A FYB Missense_Mutation p.G282V 0.34 tolerated(0.2) benign(0.001) TCGA-L9-A8F4-01 5 39341746 39341746 G A C9 Silent p.D80D 0.20 TCGA-L9-A8F4-01 5 41009471 41009471 G T MROH2B Missense_Mutation p.P1111T 0.09 deleterious(0.04) benign(0.012) TCGA-L9-A8F4-01 5 41739577 41739577 T C OXCT1 Missense_Mutation p.D479G 0.06 deleterious(0.01) benign(0.168) TCGA-L9-A8F4-01 5 43277292 43277292 C T NIM1K Silent p.T142T 0.13 TCGA-L9-A8F4-01 5 45645474 45645474 C A HCN1 Missense_Mutation p.W221L 0.12 deleterious(0) probably_damaging(0.996) TCGA-L9-A8F4-01 5 55407375 55407375 C T ANKRD55 Silent p.Q400Q 0.14 TCGA-L9-A8F4-01 5 64466556 64466556 C A ADAMTS6 Missense_Mutation p.Q1044H 0.16 tolerated(0.09) benign(0.033) TCGA-L9-A8F4-01 5 6742615 6742615 A G PAPD7 Missense_Mutation p.K91E 0.14 deleterious(0) probably_damaging(0.988) TCGA-L9-A8F4-01 5 70808208 70808208 G T BDP1 Silent p.G1400G 0.16 TCGA-L9-A8F4-01 5 70809057 70809057 A T BDP1 Silent p.A1431A 0.10 TCGA-L9-A8F4-01 5 72184040 72184040 A C TNPO1 Missense_Mutation p.Q480P 0.16 deleterious(0.01) benign(0.133) TCGA-L9-A8F4-01 5 72469131 72469131 T A TMEM174 Missense_Mutation p.Y21N 0.22 tolerated(0.08) probably_damaging(0.962) TCGA-L9-A8F4-01 5 74078923 74078923 C T FAM169A Missense_Mutation p.D433N 0.13 deleterious(0.04) possibly_damaging(0.615) TCGA-L9-A8F4-01 5 76029085 76029085 C A F2R Silent p.T345T 0.20 TCGA-L9-A8F4-01 5 76251689 76251689 G A CRHBP Splice_Site p.X182_splice 0.16 TCGA-L9-A8F4-01 5 7690873 7690873 C A ADCY2 Missense_Mutation p.L264M 0.46 deleterious(0) benign(0.41) TCGA-L9-A8F4-01 5 78293979 78293979 T A DMGDH Missense_Mutation p.I843L 0.15 tolerated(0.76) benign(0.009) TCGA-L9-A8F4-01 5 78417056 78417056 G A BHMT Missense_Mutation p.E165K 0.16 deleterious(0.01) possibly_damaging(0.49) TCGA-L9-A8F4-01 5 825288 825288 C A ZDHHC11 Silent p.S338S 0.10 TCGA-L9-A8F4-01 5 82835891 82835891 C A VCAN Missense_Mutation p.H2357N 0.14 deleterious(0.01) possibly_damaging(0.691) TCGA-L9-A8F4-01 5 90670987 90670987 T A ARRDC3 Missense_Mutation p.I208F 0.13 deleterious(0) possibly_damaging(0.888) TCGA-L9-A8F4-01 6 100368745 100368745 C G MCHR2 3'UTR 0.29 TCGA-L9-A8F4-01 6 102074308 102074308 T A GRIK2 Missense_Mutation p.S113T 0.10 tolerated(0.53) possibly_damaging(0.505) TCGA-L9-A8F4-01 6 10430443 10430443 C A LINC00518 RNA 0.23 TCGA-L9-A8F4-01 6 105526690 105526690 C A LIN28B 3'UTR 0.23 TCGA-L9-A8F4-01 6 108582149 108582149 C A SNX3 5'UTR 0.44 TCGA-L9-A8F4-01 6 110300543 110300543 C T GPR6 Silent p.D76D 0.15 TCGA-L9-A8F4-01 6 112671298 112671298 C A RFPL4B Missense_Mutation p.P130T 0.19 tolerated(0.11) benign(0.232) TCGA-L9-A8F4-01 6 117043341 117043341 A G KPNA5 Missense_Mutation p.D270G 0.08 deleterious(0) probably_damaging(0.923) TCGA-L9-A8F4-01 6 12124074 12124074 C T HIVEP1 Missense_Mutation p.A1349V 0.38 tolerated(0.32) benign(0.354) TCGA-L9-A8F4-01 6 127648147 127648147 C A ECHDC1 Missense_Mutation p.E127D 0.22 tolerated(0.2) benign(0.038) TCGA-L9-A8F4-01 6 132910343 132910343 C A TAAR5 Silent p.V161V 0.12 TCGA-L9-A8F4-01 6 133836456 133836456 C A EYA4 Intron 0.14 TCGA-L9-A8F4-01 6 134305773 134305773 T G TBPL1 Missense_Mutation p.L149V 0.34 tolerated(0.07) benign(0.248) TCGA-L9-A8F4-01 6 136599609 136599609 C A BCLAF1 Missense_Mutation p.R137M 0.10 deleterious_low_confidence(0.04) unknown(0) TCGA-L9-A8F4-01 6 136704853 136704853 C G MAP7 Missense_Mutation p.R220P 0.19 deleterious(0) probably_damaging(0.998) TCGA-L9-A8F4-01 6 138726399 138726399 C G HEBP2 Missense_Mutation p.Q74E 0.11 tolerated(0.24) benign(0.002) TCGA-L9-A8F4-01 6 145157603 145157603 A G UTRN Missense_Mutation p.R3331G 0.27 deleterious(0) probably_damaging(0.952) TCGA-L9-A8F4-01 6 146755179 146755179 G T GRM1 Silent p.L944L 0.14 TCGA-L9-A8F4-01 6 154732198 154732198 G A CNKSR3 Silent p.S383S 0.17 TCGA-L9-A8F4-01 6 157527526 157527526 G C ARID1B Missense_Mutation p.D1751H 0.05 possibly_damaging(0.661) TCGA-L9-A8F4-01 6 160240145 160240145 G C PNLDC1 Missense_Mutation p.K464N 0.12 tolerated(0.39) probably_damaging(0.965) TCGA-L9-A8F4-01 6 160670340 160670340 C A SLC22A2 Silent p.L250L 0.22 TCGA-L9-A8F4-01 6 161006171 161006171 G T LPA Missense_Mutation p.T1399K 0.14 tolerated(0.49) probably_damaging(0.999) TCGA-L9-A8F4-01 6 161152179 161152179 G A PLG Silent p.L451L 0.31 TCGA-L9-A8F4-01 6 165715562 165715562 G T C6orf118 Silent p.A83A 0.10 TCGA-L9-A8F4-01 6 24436927 24436927 A G GPLD1 Silent p.D745D 0.26 TCGA-L9-A8F4-01 6 25850805 25850805 C G SLC17A3 Missense_Mutation p.R292T 0.15 deleterious(0.04) benign(0.05) TCGA-L9-A8F4-01 6 25913482 25913482 G A SLC17A2 3'UTR 0.22 TCGA-L9-A8F4-01 6 26104245 26104245 C T HIST1H4C Missense_Mutation p.R24W 0.16 deleterious(0.02) benign(0.287) TCGA-L9-A8F4-01 6 2623819 2623819 C A C6orf195 Missense_Mutation p.G80C 0.12 tolerated_low_confidence(0.1) benign(0.013) TCGA-L9-A8F4-01 6 26373241 26373241 A G BTN3A2 Missense_Mutation p.T278A 0.17 tolerated(0.4) benign(0.003) TCGA-L9-A8F4-01 6 26373514 26373514 G C BTN3A2 Missense_Mutation p.Q309H 0.14 tolerated(0.1) benign(0.01) TCGA-L9-A8F4-01 6 28358519 28358519 C A ZSCAN12 Missense_Mutation p.Q516H 0.20 deleterious(0.01) probably_damaging(0.964) TCGA-L9-A8F4-01 6 29454983 29454983 C T MAS1L Missense_Mutation p.A233T 0.13 tolerated(0.07) benign(0.021) TCGA-L9-A8F4-01 6 29454984 29454984 A T MAS1L Missense_Mutation p.H232Q 0.13 deleterious(0.04) benign(0.073) TCGA-L9-A8F4-01 6 30522838 30522838 C A GNL1 Missense_Mutation p.G124C 0.10 deleterious(0) probably_damaging(0.998) TCGA-L9-A8F4-01 6 31549603 31549603 G T LTB Missense_Mutation p.Q66K 0.16 tolerated(0.34) benign(0.073) TCGA-L9-A8F4-01 6 31592296 31592296 G C PRRC2A Missense_Mutation p.D154H 0.27 unknown(0) TCGA-L9-A8F4-01 6 31828398 31828399 TC - NEU1 Splice_Site p.X206_splice 0.18 TCGA-L9-A8F4-01 6 31931241 31931241 G T SKIV2L Silent p.V485V 0.06 TCGA-L9-A8F4-01 6 32138811 32138811 C A AGPAT1 Silent p.L79L 0.20 TCGA-L9-A8F4-01 6 32157580 32157580 C A PBX2 Missense_Mutation p.G38V 0.27 tolerated_low_confidence(0.21) unknown(0) TCGA-L9-A8F4-01 6 39272426 39272426 C A KCNK17 Missense_Mutation p.G120C 0.24 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 6 39284719 39284719 A T KCNK16 Missense_Mutation p.L167Q 0.12 deleterious(0.02) benign(0.281) TCGA-L9-A8F4-01 6 43221061 43221061 G T TTBK1 Missense_Mutation p.G97C 0.10 probably_damaging(0.998) TCGA-L9-A8F4-01 6 43483692 43483692 C A YIPF3 Nonsense_Mutation p.E75* 0.25 TCGA-L9-A8F4-01 6 45480075 45480075 A T RUNX2 Missense_Mutation p.T318S 0.17 tolerated(0.07) probably_damaging(0.986) TCGA-L9-A8F4-01 6 46656530 46656530 C T TDRD6 Missense_Mutation p.S222F 0.18 tolerated(0.13) benign(0.007) TCGA-L9-A8F4-01 6 46656886 46656886 G T TDRD6 Missense_Mutation p.A341S 0.18 deleterious(0.03) probably_damaging(0.996) TCGA-L9-A8F4-01 6 46690607 46690607 C A PLA2G7 Missense_Mutation p.V8L 0.25 tolerated_low_confidence(0.34) benign(0.001) TCGA-L9-A8F4-01 6 51907672 51907672 T C PKHD1 Missense_Mutation p.R1028G 0.08 tolerated(0.06) possibly_damaging(0.497) TCGA-L9-A8F4-01 6 51923337 51923337 C G PKHD1 Missense_Mutation p.R432S 0.11 tolerated(0.69) benign(0.011) TCGA-L9-A8F4-01 6 52993289 52993289 T A GCM1 Silent p.P342P 0.12 TCGA-L9-A8F4-01 6 55039517 55039517 G A HCRTR2 Nonsense_Mutation p.W44* 0.13 TCGA-L9-A8F4-01 6 56443679 56443679 C A DST Silent p.T1697T 0.25 TCGA-L9-A8F4-01 6 56480550 56480550 G C DST Intron 0.15 TCGA-L9-A8F4-01 6 69943210 69943210 C T BAI3 Nonsense_Mutation p.Q837* 0.21 TCGA-L9-A8F4-01 6 71242914 71242914 C A FAM135A Missense_Mutation p.P1276H 0.09 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 6 7378866 7378866 G T CAGE1 Missense_Mutation p.P224Q 0.12 tolerated(1) benign(0.021) TCGA-L9-A8F4-01 6 73904393 73904393 G T KCNQ5 Silent p.S704S 0.12 TCGA-L9-A8F4-01 6 75812383 75812383 A G COL12A1 Missense_Mutation p.I2782T 0.21 benign(0) TCGA-L9-A8F4-01 6 80723084 80723084 G T TTK Splice_Site p.X328_splice 0.13 TCGA-L9-A8F4-01 6 88773886 88773886 T C SPACA1 Missense_Mutation p.V227A 0.19 tolerated(0.06) probably_damaging(0.998) TCGA-L9-A8F4-01 6 90482299 90482299 G A MDN1 Silent p.H692H 0.13 TCGA-L9-A8F4-01 6 97052681 97052681 G A FHL5 Missense_Mutation p.C72Y 0.26 deleterious(0) probably_damaging(0.984) TCGA-L9-A8F4-01 6 99848452 99848452 T A PNISR Silent p.A794A 0.11 TCGA-L9-A8F4-01 7 100391523 100391523 G T ZAN Intron 0.20 TCGA-L9-A8F4-01 7 100549841 100549841 C A MUC3A Missense_Mutation p.P141H 0.10 deleterious(0) unknown(0) TCGA-L9-A8F4-01 7 102952094 102952094 C T PMPCB Nonsense_Mutation p.R387* 0.10 TCGA-L9-A8F4-01 7 106508535 106508535 C G PIK3CG Missense_Mutation p.R177G 0.12 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 7 120478917 120478917 T C TSPAN12 Missense_Mutation p.M67V 0.18 tolerated(0.35) benign(0.002) TCGA-L9-A8F4-01 7 123269387 123269387 G T ASB15 Missense_Mutation p.D447Y 0.13 deleterious(0) possibly_damaging(0.759) TCGA-L9-A8F4-01 7 126086349 126086349 G T GRM8 Silent p.P836P 0.21 TCGA-L9-A8F4-01 7 126542621 126542621 C A GRM8 Missense_Mutation p.R377S 0.15 tolerated(0.56) possibly_damaging(0.779) TCGA-L9-A8F4-01 7 127950808 127950808 G C RBM28 3'UTR 0.06 TCGA-L9-A8F4-01 7 133160147 133160147 A T EXOC4 Silent p.L416L 0.22 TCGA-L9-A8F4-01 7 134916770 134916770 C A STRA8 Missense_Mutation p.Q14K 0.20 tolerated_low_confidence(1) benign(0) TCGA-L9-A8F4-01 7 141635636 141635636 A T CLEC5A Missense_Mutation p.I108N 0.18 deleterious(0) probably_damaging(0.998) TCGA-L9-A8F4-01 7 142428889 142428889 C A TRBV28 Nonsense_Mutation p.Y83* 0.34 TCGA-L9-A8F4-01 7 142829230 142829230 G A PIP Silent p.L7L 0.15 TCGA-L9-A8F4-01 7 142836194 142836194 C A PIP Silent p.I76I 0.21 TCGA-L9-A8F4-01 7 143017799 143017799 G T CLCN1 Missense_Mutation p.G115V 0.29 deleterious(0) probably_damaging(0.999) TCGA-L9-A8F4-01 7 143806989 143806989 C A OR2A2 Missense_Mutation p.A105D 0.06 deleterious(0) benign(0.226) TCGA-L9-A8F4-01 7 148312516 148312516 C T C7orf33 3'UTR 0.23 TCGA-L9-A8F4-01 7 148802261 148802261 C - ZNF425 Frame_Shift_Del p.R234Sfs*24 0.11 TCGA-L9-A8F4-01 7 149519224 149519224 C G SSPO RNA 0.12 TCGA-L9-A8F4-01 7 149545158 149545158 C T ZNF862 Silent p.Y192Y 0.30 TCGA-L9-A8F4-01 7 150217499 150217499 T A GIMAP7 Missense_Mutation p.I146K 0.17 deleterious(0) possibly_damaging(0.77) TCGA-L9-A8F4-01 7 150417292 150417292 C A GIMAP1 Missense_Mutation p.T67N 0.16 deleterious(0.04) benign(0.063) TCGA-L9-A8F4-01 7 150817200 150817200 A G AGAP3 Missense_Mutation p.K366E 0.17 deleterious(0.01) possibly_damaging(0.883) TCGA-L9-A8F4-01 7 155604586 155604586 G T SHH Silent p.T77T 0.19 TCGA-L9-A8F4-01 7 18625048 18625048 A T HDAC9 Missense_Mutation p.Q56L 0.15 deleterious(0.01) probably_damaging(0.995) TCGA-L9-A8F4-01 7 21938969 21938969 C A DNAH11 Silent p.L4362L 0.23 TCGA-L9-A8F4-01 7 27147767 27147767 C A HOXA3 Missense_Mutation p.V367L 0.29 tolerated(0.05) benign(0.072) TCGA-L9-A8F4-01 7 27150337 27150337 C A HOXA3 5'UTR 0.30 TCGA-L9-A8F4-01 7 27222544 27222544 G C HOXA11 Silent p.R271R 0.15 TCGA-L9-A8F4-01 7 2998182 2998182 G T CARD11 5'UTR 0.16 TCGA-L9-A8F4-01 7 34888193 34888193 A C NPSR1 Missense_Mutation p.I315L 0.24 deleterious(0.04) possibly_damaging(0.47) TCGA-L9-A8F4-01 7 35009066 35009066 A C DPY19L1 Silent p.A258A 0.17 TCGA-L9-A8F4-01 7 38256644 38256644 A G STARD3NL Missense_Mutation p.S134G 0.17 deleterious(0.01) possibly_damaging(0.854) TCGA-L9-A8F4-01 7 42085089 42085089 C G GLI3 Missense_Mutation p.Q240H 0.26 deleterious(0.01) benign(0.014) TCGA-L9-A8F4-01 7 47408887 47408887 A T TNS3 Missense_Mutation p.S452R 0.16 tolerated(0.23) benign(0.439) TCGA-L9-A8F4-01 7 48314040 48314040 G T ABCA13 Missense_Mutation p.V1593L 0.19 benign(0.001) TCGA-L9-A8F4-01 7 50684029 50684029 T C GRB10 Missense_Mutation p.S288G 0.22 tolerated(0.77) benign(0.008) TCGA-L9-A8F4-01 7 56007764 56007764 C A ZNF713 3'UTR 0.23 TCGA-L9-A8F4-01 7 6178808 6178808 C G USP42 Missense_Mutation p.C213W 0.41 deleterious(0) probably_damaging(0.999) TCGA-L9-A8F4-01 7 65552363 65552363 G T ASL Silent p.L215L 0.18 TCGA-L9-A8F4-01 7 70886029 70886029 G A WBSCR17 Nonsense_Mutation p.W300* 0.19 TCGA-L9-A8F4-01 7 79828668 79828668 G T GNAI1 Missense_Mutation p.R144L 0.14 deleterious(0.01) probably_damaging(0.951) TCGA-L9-A8F4-01 7 80374267 80374267 C A SEMA3C Missense_Mutation p.K733N 0.23 deleterious(0) possibly_damaging(0.691) TCGA-L9-A8F4-01 7 82583527 82583527 C A PCLO Missense_Mutation p.D2248Y 0.21 unknown(0) TCGA-L9-A8F4-01 7 8260937 8260937 T G ICA1 Silent p.T116T 0.26 TCGA-L9-A8F4-01 7 86539175 86539175 C A KIAA1324L Missense_Mutation p.R771L 0.18 deleterious(0.04) benign(0.126) TCGA-L9-A8F4-01 7 881662 881662 G A SUN1 Missense_Mutation p.V116I 0.16 tolerated(0.53) benign(0.001) TCGA-L9-A8F4-01 7 88962676 88962676 G T ZNF804B Splice_Site p.X127_splice 0.30 TCGA-L9-A8F4-01 7 88964691 88964691 C G ZNF804B Missense_Mutation p.R799G 0.15 deleterious(0.01) benign(0.172) TCGA-L9-A8F4-01 7 89939549 89939549 G C C7orf63 Silent p.T941T 0.10 TCGA-L9-A8F4-01 7 92764590 92764590 C A SAMD9L Missense_Mutation p.R232L 0.27 deleterious(0) possibly_damaging(0.907) TCGA-L9-A8F4-01 7 94898588 94898588 T C PPP1R9A Missense_Mutation p.S965P 0.07 tolerated(0.08) possibly_damaging(0.876) TCGA-L9-A8F4-01 7 95166944 95166944 T A ASB4 Missense_Mutation p.M385K 0.16 tolerated(0.17) benign(0.017) TCGA-L9-A8F4-01 7 95216435 95216435 C A PDK4 Missense_Mutation p.A328S 0.17 deleterious(0) possibly_damaging(0.75) TCGA-L9-A8F4-01 7 97484725 97484725 C A ASNS Silent p.V359V 0.14 TCGA-L9-A8F4-01 7 99767929 99767929 C T GPC2 Missense_Mutation p.G555E 0.29 deleterious(0) probably_damaging(0.981) TCGA-L9-A8F4-01 7 99800113 99800113 T A STAG3 Missense_Mutation p.L867Q 0.24 deleterious(0) probably_damaging(0.998) TCGA-L9-A8F4-01 8 100146880 100146880 G T VPS13B Missense_Mutation p.E409D 0.26 tolerated(0.19) possibly_damaging(0.636) TCGA-L9-A8F4-01 8 10387189 10387189 C A PRSS55 Nonsense_Mutation p.C109* 0.27 TCGA-L9-A8F4-01 8 104943518 104943518 C A RIMS2 Missense_Mutation p.H758N 0.12 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-L9-A8F4-01 8 107763121 107763121 G C OXR1 Missense_Mutation p.K859N 0.22 deleterious(0) benign(0.407) TCGA-L9-A8F4-01 8 110463272 110463272 C T PKHD1L1 Missense_Mutation p.P2082S 0.14 tolerated(0.71) benign(0.006) TCGA-L9-A8F4-01 8 110487448 110487448 G T PKHD1L1 Missense_Mutation p.V2903L 0.27 tolerated(0.16) benign(0.008) TCGA-L9-A8F4-01 8 113317133 113317133 G A CSMD3 Missense_Mutation p.P2695S 0.18 tolerated(0.07) possibly_damaging(0.531) TCGA-L9-A8F4-01 8 116599705 116599705 C A TRPS1 Missense_Mutation p.E741D 0.14 tolerated_low_confidence(0.6) benign(0.005) TCGA-L9-A8F4-01 8 124975585 124975585 G T FER1L6 Missense_Mutation p.L48F 0.13 tolerated_low_confidence(0.31) benign(0.002) TCGA-L9-A8F4-01 8 125083765 125083765 A C FER1L6 Missense_Mutation p.K1329Q 0.13 deleterious(0.01) possibly_damaging(0.821) TCGA-L9-A8F4-01 8 126021464 126021464 G C SQLE Silent p.P329P 0.33 TCGA-L9-A8F4-01 8 13259087 13259087 C A DLC1 Missense_Mutation p.M355I 0.20 deleterious_low_confidence(0.04) possibly_damaging(0.889) TCGA-L9-A8F4-01 8 133045336 133045336 C A OC90 Missense_Mutation p.G270V 0.29 deleterious(0.01) probably_damaging(0.964) TCGA-L9-A8F4-01 8 133045337 133045337 C A OC90 Missense_Mutation p.G270W 0.33 deleterious(0) probably_damaging(0.998) TCGA-L9-A8F4-01 8 143832523 143832523 T A LYPD2 Missense_Mutation p.T42S 0.19 tolerated(0.12) benign(0.129) TCGA-L9-A8F4-01 8 144659234 144659234 G T NAPRT1 Missense_Mutation p.P228T 0.25 tolerated(0.49) benign(0.016) TCGA-L9-A8F4-01 8 144919283 144919283 C T NRBP2 Silent p.L397L 0.10 TCGA-L9-A8F4-01 8 146015205 146015205 T A RPL8 Missense_Mutation p.Q253L 0.22 tolerated_low_confidence(0.09) benign(0) TCGA-L9-A8F4-01 8 1626554 1626554 A T DLGAP2 Silent p.V741V 0.32 TCGA-L9-A8F4-01 8 21926991 21926991 G T DMTN Missense_Mutation p.G119V 0.20 tolerated(0.37) benign(0.13) TCGA-L9-A8F4-01 8 23538714 23538714 G A NKX3-1 3'UTR 0.24 TCGA-L9-A8F4-01 8 27094410 27094410 C A STMN4 Nonsense_Mutation p.E202* 0.29 TCGA-L9-A8F4-01 8 28908626 28908626 G A HMBOX1 Missense_Mutation p.R406Q 0.24 tolerated(0.11) benign(0.044) TCGA-L9-A8F4-01 8 37607944 37607944 G T ERLIN2 Missense_Mutation p.A197S 0.19 tolerated(0.68) benign(0.441) TCGA-L9-A8F4-01 8 52773655 52773655 T C PCMTD1 Silent p.K19K 0.16 TCGA-L9-A8F4-01 8 54656143 54656143 T C ATP6V1H Missense_Mutation p.H462R 0.21 deleterious(0) possibly_damaging(0.85) TCGA-L9-A8F4-01 8 55370980 55370980 C A SOX17 Missense_Mutation p.H94Q 0.10 deleterious(0) possibly_damaging(0.611) TCGA-L9-A8F4-01 8 57025645 57025645 G T MOS Silent p.L299L 0.33 TCGA-L9-A8F4-01 8 57354023 57354023 T A PENK Missense_Mutation p.K204N 0.23 tolerated(0.07) possibly_damaging(0.603) TCGA-L9-A8F4-01 8 67405829 67405829 G C C8orf46 5'UTR 0.23 TCGA-L9-A8F4-01 8 67405830 67405830 G T C8orf46 5'UTR 0.23 TCGA-L9-A8F4-01 8 67790929 67790929 G T MCMDC2 Missense_Mutation p.G201V 0.17 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 8 72211302 72211302 G T EYA1 Missense_Mutation p.A269E 0.28 tolerated(0.13) probably_damaging(0.997) TCGA-L9-A8F4-01 8 72756351 72756351 G T MSC Nonsense_Mutation p.Y21* 0.20 TCGA-L9-A8F4-01 8 7305446 7305446 G T SPAG11B 3'Flank 0.62 TCGA-L9-A8F4-01 8 73848548 73848548 G A KCNB2 Missense_Mutation p.G320S 0.23 deleterious(0.02) probably_damaging(0.996) TCGA-L9-A8F4-01 8 87242395 87242395 C A SLC7A13 Missense_Mutation p.V38L 0.03 deleterious(0.02) probably_damaging(0.957) TCGA-L9-A8F4-01 8 88885266 88885266 C A DCAF4L2 Missense_Mutation p.V312L 0.06 tolerated(0.65) benign(0.062) TCGA-L9-A8F4-01 8 88886082 88886082 C T DCAF4L2 Missense_Mutation p.A40T 0.12 tolerated(1) benign(0.001) TCGA-L9-A8F4-01 8 90995001 90995001 C A NBN Silent p.S40S 0.16 TCGA-L9-A8F4-01 8 92307824 92307824 C A SLC26A7 Missense_Mutation p.Q124K 0.17 tolerated(0.75) benign(0.029) TCGA-L9-A8F4-01 9 100124077 100124077 G T CCDC180 Missense_Mutation p.A1229S 0.21 tolerated(0.28) benign(0.001) TCGA-L9-A8F4-01 9 127670699 127670699 G C GOLGA1 Missense_Mutation p.A341G 0.06 tolerated(0.32) benign(0.018) TCGA-L9-A8F4-01 9 13219567 13219567 T A MPDZ Silent p.P359P 0.26 TCGA-L9-A8F4-01 9 135562661 135562661 T C GTF3C4 Missense_Mutation p.I784T 0.05 tolerated(0.82) benign(0.002) TCGA-L9-A8F4-01 9 139409980 139409980 C A NOTCH1 Missense_Mutation p.D620Y 0.50 deleterious(0) probably_damaging(0.986) TCGA-L9-A8F4-01 9 14841493 14841494 TT ATG FREM1 Frame_Shift_Ins p.Q611Pfs*9 0.24 TCGA-L9-A8F4-01 9 16437487 16437487 G A BNC2 Silent p.I235I 0.38 TCGA-L9-A8F4-01 9 35558521 35558521 A T RUSC2 Missense_Mutation p.S1100C 0.30 deleterious(0) probably_damaging(0.963) TCGA-L9-A8F4-01 9 40716075 40716075 G A FAM74A3 RNA 0.13 TCGA-L9-A8F4-01 9 77275543 77275543 A T RORB Silent p.A216A 0.24 TCGA-L9-A8F4-01 9 82188676 82188676 C A TLE4 Missense_Mutation p.Q40K 0.17 tolerated(0.11) benign(0.098) TCGA-L9-A8F4-01 9 8331675 8331675 G T PTPRD Missense_Mutation p.P1814Q 0.12 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 9 95792238 95792238 C T FGD3 Missense_Mutation p.S547F 0.31 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 9 96054655 96054655 C A WNK2 Missense_Mutation p.H1705N 0.36 unknown(0) TCGA-L9-A8F4-01 X 100183239 100183239 G C XKRX Missense_Mutation p.L19V 0.18 tolerated(0.43) benign(0.001) TCGA-L9-A8F4-01 X 100603571 100603571 G T TIMM8A Missense_Mutation p.Q28K 0.25 deleterious(0.02) benign(0.395) TCGA-L9-A8F4-01 X 101098203 101098203 T A NXF5 5'UTR 0.17 TCGA-L9-A8F4-01 X 101821927 101821927 G C NXF4 RNA 0.27 TCGA-L9-A8F4-01 X 103267783 103267783 C A H2BFWT Missense_Mutation p.M150I 0.12 tolerated(1) benign(0.237) TCGA-L9-A8F4-01 X 103411570 103411570 G C FAM199X Missense_Mutation p.S35T 0.24 tolerated_low_confidence(0.23) benign(0) TCGA-L9-A8F4-01 X 104464325 104464325 C G TEX13A Missense_Mutation p.A185P 0.10 tolerated(0.06) possibly_damaging(0.908) TCGA-L9-A8F4-01 X 106846237 106846237 G T FRMPD3 Silent p.L1689L 0.17 TCGA-L9-A8F4-01 X 107225028 107225028 G T TEX13B Missense_Mutation p.N110K 0.12 deleterious(0) benign(0.425) TCGA-L9-A8F4-01 X 107930891 107930891 C A COL4A5 Missense_Mutation p.Q1499K 0.19 probably_damaging(0.997) TCGA-L9-A8F4-01 X 107976597 107976597 G C IRS4 Missense_Mutation p.A993G 0.19 deleterious(0) unknown(0) TCGA-L9-A8F4-01 X 107979118 107979118 A T IRS4 Missense_Mutation p.C153S 0.10 deleterious(0) probably_damaging(0.99) TCGA-L9-A8F4-01 X 11161903 11161903 C G ARHGAP6 Intron 0.28 TCGA-L9-A8F4-01 X 11682519 11682519 C A ARHGAP6 Missense_Mutation p.A144S 0.25 tolerated_low_confidence(0.65) benign(0.003) TCGA-L9-A8F4-01 X 117796663 117796663 G T DOCK11 Nonsense_Mutation p.G1662* 0.09 TCGA-L9-A8F4-01 X 119077318 119077318 G T NKAP Missense_Mutation p.P84H 0.27 deleterious(0.01) probably_damaging(0.968) TCGA-L9-A8F4-01 X 123034470 123034470 T A XIAP Silent p.V409V 0.12 TCGA-L9-A8F4-01 X 123787596 123787596 A T TENM1 Silent p.V402V 0.27 TCGA-L9-A8F4-01 X 125299423 125299423 G T DCAF12L2 Missense_Mutation p.T162K 0.27 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 X 127186128 127186128 G C ACTRT1 Missense_Mutation p.L20V 0.25 tolerated(0.28) benign(0.031) TCGA-L9-A8F4-01 X 12725698 12725698 C G FRMPD4 Missense_Mutation p.H466Q 0.20 deleterious(0.05) probably_damaging(1) TCGA-L9-A8F4-01 X 128615094 128615094 G T SMARCA1 Nonsense_Mutation p.Y762* 0.18 TCGA-L9-A8F4-01 X 128940207 128940207 G A ZDHHC9 3'UTR 0.24 TCGA-L9-A8F4-01 X 129147034 129147034 C T BCORL1 Nonsense_Mutation p.Q96* 0.21 TCGA-L9-A8F4-01 X 129281818 129281818 G T AIFM1 Missense_Mutation p.A128E 0.16 tolerated(0.33) benign(0.02) TCGA-L9-A8F4-01 X 129765537 129765537 G T ENOX2 Missense_Mutation p.S507Y 0.25 tolerated(0.2) benign(0.003) TCGA-L9-A8F4-01 X 134991812 134991812 C G SAGE1 Missense_Mutation p.Q533E 0.13 deleterious(0.01) possibly_damaging(0.764) TCGA-L9-A8F4-01 X 135313018 135313018 C A MAP7D3 Silent p.L507L 0.15 TCGA-L9-A8F4-01 X 139037987 139037987 G T CXorf66 3'UTR 0.21 TCGA-L9-A8F4-01 X 140984733 140984733 C A MAGEC3 Missense_Mutation p.Q397K 0.36 tolerated(0.27) benign(0.025) TCGA-L9-A8F4-01 X 141291394 141291394 C A MAGEC2 Missense_Mutation p.C127F 0.09 tolerated(0.71) benign(0.024) TCGA-L9-A8F4-01 X 142803798 142803798 C T SPANXN2 5'UTR 0.04 TCGA-L9-A8F4-01 X 148062289 148062289 C A AFF2 Missense_Mutation p.Q1198K 0.19 deleterious(0) benign(0.102) TCGA-L9-A8F4-01 X 148585771 148585771 G C IDS Silent p.G52G 0.16 TCGA-L9-A8F4-01 X 151869678 151869678 A T MAGEA6 Missense_Mutation p.K123M 0.19 deleterious(0) probably_damaging(0.999) TCGA-L9-A8F4-01 X 153072743 153072743 C G PDZD4 Silent p.L126L 0.19 TCGA-L9-A8F4-01 X 153132839 153132839 G C L1CAM Silent p.V703V 0.17 TCGA-L9-A8F4-01 X 153490609 153490609 C A OPN1MW2 Silent p.V115V 0.14 TCGA-L9-A8F4-01 X 153549180 153549180 G T TKTL1 Missense_Mutation p.R369L 0.06 deleterious(0.02) probably_damaging(0.993) TCGA-L9-A8F4-01 X 153662678 153662678 G T ATP6AP1 Missense_Mutation p.W270L 0.15 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 X 154493665 154493665 C G RAB39B 5'UTR 0.33 TCGA-L9-A8F4-01 X 155004505 155004505 A T SPRY3 3'UTR 0.50 TCGA-L9-A8F4-01 X 155227353 155227353 G C IL9R 5'UTR 0.19 TCGA-L9-A8F4-01 X 15706785 15706785 G A CA5BP1 Intron 0.26 TCGA-L9-A8F4-01 X 1584858 1584858 G A P2RY8 Silent p.F198F 0.17 TCGA-L9-A8F4-01 X 19021114 19021114 A T GPR64 Missense_Mutation p.C694S 0.28 deleterious(0) probably_damaging(1) TCGA-L9-A8F4-01 X 216005 216005 G T PLCXD1 3'UTR 0.12 TCGA-L9-A8F4-01 X 21674916 21674916 C A KLHL34 Nonsense_Mutation p.E331* 0.25 TCGA-L9-A8F4-01 X 24024370 24024370 G A KLHL15 Silent p.I147I 0.10 TCGA-L9-A8F4-01 X 30254295 30254295 G C MAGEB3 Missense_Mutation p.G85A 0.12 tolerated(0.09) benign(0.135) TCGA-L9-A8F4-01 X 31222100 31222100 C T DMD Missense_Mutation p.S3262N 0.31 benign(0.195) TCGA-L9-A8F4-01 X 3239524 3239524 C A MXRA5 Missense_Mutation p.G1401V 0.28 tolerated(0.45) benign(0.001) TCGA-L9-A8F4-01 X 3240478 3240478 G T MXRA5 Missense_Mutation p.S1083Y 0.19 tolerated(0.2) possibly_damaging(0.556) TCGA-L9-A8F4-01 X 3242454 3242454 C A MXRA5 Missense_Mutation p.Q424H 0.16 tolerated(0.63) benign(0.006) TCGA-L9-A8F4-01 X 3242792 3242792 G T MXRA5 Missense_Mutation p.Q312K 0.22 deleterious(0.04) benign(0.298) TCGA-L9-A8F4-01 X 34149027 34149027 C T FAM47A Missense_Mutation p.E457K 0.13 tolerated(0.24) benign(0.061) TCGA-L9-A8F4-01 X 34149028 34149028 G T FAM47A Silent p.T456T 0.11 TCGA-L9-A8F4-01 X 34150392 34150392 C A FAM47A Missense_Mutation p.G2W 0.25 deleterious(0) probably_damaging(0.988) TCGA-L9-A8F4-01 X 34648547 34648547 C A TMEM47 Missense_Mutation p.L143F 0.19 deleterious(0.01) possibly_damaging(0.659) TCGA-L9-A8F4-01 X 36103561 36103561 G T CHDC2 Nonsense_Mutation p.G183* 0.12 TCGA-L9-A8F4-01 X 36103562 36103562 G T CHDC2 Missense_Mutation p.G183V 0.12 deleterious(0) probably_damaging(0.997) TCGA-L9-A8F4-01 X 36162964 36162964 C A CHDC2 3'UTR 0.15 TCGA-L9-A8F4-01 X 37028757 37028757 C T FAM47C Silent p.R758R 0.13 TCGA-L9-A8F4-01 X 37913572 37913572 G T SYTL5 Missense_Mutation p.D76Y 0.15 deleterious(0.03) probably_damaging(0.95) TCGA-L9-A8F4-01 X 39913551 39913551 C A BCOR Missense_Mutation p.D1593Y 0.18 deleterious(0) possibly_damaging(0.602) TCGA-L9-A8F4-01 X 40460122 40460122 G T ATP6AP2 Missense_Mutation p.A283S 0.19 tolerated(1) benign(0.004) TCGA-L9-A8F4-01 X 40460123 40460123 C T ATP6AP2 Missense_Mutation p.A283V 0.18 tolerated(0.09) benign(0.005) TCGA-L9-A8F4-01 X 41084182 41084182 C T USP9X Silent p.F2313F 0.17 TCGA-L9-A8F4-01 X 44703659 44703659 C A DUSP21 Missense_Mutation p.T94N 0.22 tolerated(0.2) benign(0.006) TCGA-L9-A8F4-01 X 47070254 47070254 G A UBA1 Missense_Mutation p.G738E 0.35 deleterious(0) probably_damaging(0.99) TCGA-L9-A8F4-01 X 47269774 47269774 G T ZNF157 Nonsense_Mutation p.E58* 0.10 TCGA-L9-A8F4-01 X 47500706 47500706 C A ELK1 Silent p.L45L 0.20 TCGA-L9-A8F4-01 X 48118047 48118047 C A SSX1 Missense_Mutation p.D87E 0.16 deleterious(0.04) probably_damaging(0.962) TCGA-L9-A8F4-01 X 48325378 48325378 G A SLC38A5 Silent p.A72A 0.15 TCGA-L9-A8F4-01 X 48417427 48417427 C A TBC1D25 Intron 0.16 TCGA-L9-A8F4-01 X 48661550 48661550 G T HDAC6 Missense_Mutation p.A80S 0.14 tolerated(0.38) benign(0.013) TCGA-L9-A8F4-01 X 48839714 48839714 G C GRIPAP1 Missense_Mutation p.R471G 0.21 possibly_damaging(0.813) TCGA-L9-A8F4-01 X 49236882 49236882 G C GAGE2B Missense_Mutation p.E18Q 0.48 benign(0.011) TCGA-L9-A8F4-01 X 50053162 50053162 G C CCNB3 Missense_Mutation p.A665P 0.17 tolerated(0.18) benign(0.001) TCGA-L9-A8F4-01 X 53271034 53271034 C T IQSEC2 Missense_Mutation p.D983N 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-L9-A8F4-01 X 53575917 53575917 C A HUWE1 Intron 0.36 TCGA-L9-A8F4-01 X 53592128 53592128 G C HUWE1 Silent p.P2260P 0.19 TCGA-L9-A8F4-01 X 54482124 54482124 C A FGD1 Splice_Site p.X645_splice 0.27 TCGA-L9-A8F4-01 X 54777781 54777781 G T ITIH6 Missense_Mutation p.P1129T 0.24 deleterious(0) probably_damaging(0.999) TCGA-L9-A8F4-01 X 55478977 55478977 C A MAGEH1 Missense_Mutation p.T57N 0.32 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-L9-A8F4-01 X 55514743 55514743 G T USP51 Missense_Mutation p.N210K 0.18 tolerated(0.15) benign(0.008) TCGA-L9-A8F4-01 X 56292166 56292166 A G KLF8 Missense_Mutation p.N212S 0.07 tolerated(0.61) benign(0.017) TCGA-L9-A8F4-01 X 5821827 5821827 G T NLGN4X Silent p.R298R 0.25 TCGA-L9-A8F4-01 X 64949467 64949467 G A MSN Silent p.E120E 0.18 TCGA-L9-A8F4-01 X 65824950 65824950 C A EDA2R Missense_Mutation p.R69L 0.24 deleterious(0.02) possibly_damaging(0.712) TCGA-L9-A8F4-01 X 68381806 68381806 C G PJA1 Missense_Mutation p.G426R 0.17 tolerated(0.24) benign(0.166) TCGA-L9-A8F4-01 X 69639962 69639962 C A KIF4A Silent p.P1182P 0.16 TCGA-L9-A8F4-01 X 69671809 69671809 C A DLG3 Missense_Mutation p.P360T 0.20 tolerated(0.23) benign(0.006) TCGA-L9-A8F4-01 X 69773184 69773184 C G TEX11 Missense_Mutation p.E806Q 0.20 tolerated(1) benign(0.008) TCGA-L9-A8F4-01 X 70323848 70323848 G A CXorf65 Nonsense_Mutation p.Q181* 0.15 TCGA-L9-A8F4-01 X 70324650 70324650 A T CXorf65 Silent p.P96P 0.20 TCGA-L9-A8F4-01 X 70462189 70462189 G T ZMYM3 Silent p.T1211T 0.21 TCGA-L9-A8F4-01 X 70617267 70617267 G T TAF1 Missense_Mutation p.V1211F 0.20 deleterious(0.01) possibly_damaging(0.762) TCGA-L9-A8F4-01 X 70828843 70828843 C A ACRC Missense_Mutation p.P496H 0.18 unknown(0) TCGA-L9-A8F4-01 X 70837297 70837297 G C CXCR3 Missense_Mutation p.Q56E 0.13 tolerated(0.15) possibly_damaging(0.547) TCGA-L9-A8F4-01 X 71933677 71933677 C T PHKA1 Missense_Mutation p.V18M 0.22 deleterious(0) probably_damaging(0.962) TCGA-L9-A8F4-01 X 73066790 73066790 G A XIST RNA 0.17 TCGA-L9-A8F4-01 X 75649460 75649460 C A MAGEE1 Silent p.S379S 0.17 TCGA-L9-A8F4-01 X 76776334 76776334 C T ATRX Missense_Mutation p.A2378T 0.13 possibly_damaging(0.561) TCGA-L9-A8F4-01 X 76937414 76937414 T C ATRX Missense_Mutation p.T1112A 0.08 benign(0.009) TCGA-L9-A8F4-01 X 76944412 76944412 G C ATRX Missense_Mutation p.L165V 0.12 probably_damaging(0.948) TCGA-L9-A8F4-01 X 77112320 77112320 C A MAGT1 Missense_Mutation p.L226F 0.16 tolerated(0.12) benign(0.085) TCGA-L9-A8F4-01 X 77373668 77373668 G T PGK1 Splice_Site p.X214_splice 0.17 TCGA-L9-A8F4-01 X 77912481 77912481 G T ZCCHC5 3'UTR 0.14 TCGA-L9-A8F4-01 X 78427154 78427154 C A GPR174 Missense_Mutation p.P217H 0.16 tolerated(0.12) possibly_damaging(0.612) TCGA-L9-A8F4-01 X 79698202 79698202 G T FAM46D Missense_Mutation p.G55V 0.20 deleterious(0) possibly_damaging(0.756) TCGA-L9-A8F4-01 X 83141578 83141578 C A CYLC1 Missense_Mutation p.H648N 0.05 tolerated(0.12) benign(0.097) TCGA-L9-A8F4-01 X 84349921 84349921 C - SATL1 Splice_Site p.X592_splice 0.14 TCGA-L9-A8F4-01 X 85404004 85404004 A T DACH2 Missense_Mutation p.Q127L 0.19 deleterious(0) benign(0.359) TCGA-L9-A8F4-01 X 86873095 86873095 T A KLHL4 Nonsense_Mutation p.C296* 0.17 TCGA-L9-A8F4-01 X 96213028 96213028 C A DIAPH2 Missense_Mutation p.P606T 0.10 tolerated(0.42) unknown(0) TCGA-L9-A8F4-01 X 96213029 96213029 C A DIAPH2 Missense_Mutation p.P606Q 0.10 tolerated(0.32) unknown(0) TCGA-L9-A8F4-01 X 96369793 96369793 C A DIAPH2 Missense_Mutation p.H806Q 0.24 tolerated(1) possibly_damaging(0.531) TCGA-MN-A4N1-01 10 114205200 114205200 C A ZDHHC6 5'UTR 0.32 TCGA-MN-A4N1-01 10 118101652 118101652 G A CCDC172 Missense_Mutation p.M129I 0.31 tolerated(1) benign(0.002) TCGA-MN-A4N1-01 10 122665427 122665427 C T WDR11 Missense_Mutation p.R1111W 0.19 deleterious(0) probably_damaging(0.988) TCGA-MN-A4N1-01 10 124331855 124331855 C A DMBT1 Silent p.T71T 0.34 TCGA-MN-A4N1-01 10 125805372 125805372 G A CHST15 Silent p.N119N 0.05 TCGA-MN-A4N1-01 10 126495432 126495432 G C FAM175B Missense_Mutation p.E35D 0.15 deleterious(0.02) possibly_damaging(0.791) TCGA-MN-A4N1-01 10 134218991 134218991 G A PWWP2B Silent p.P329P 0.17 TCGA-MN-A4N1-01 10 134623945 134623945 T C TTC40 Silent p.S2544S 0.21 TCGA-MN-A4N1-01 10 135101784 135101784 T A TUBGCP2 Missense_Mutation p.Q552L 0.21 deleterious(0.03) benign(0.046) TCGA-MN-A4N1-01 10 135165541 135165541 G A PRAP1 Silent p.P53P 0.30 TCGA-MN-A4N1-01 10 135165965 135165965 C - PRAP1 3'UTR 0.10 TCGA-MN-A4N1-01 10 16979676 16979676 G T CUBN Silent p.S1947S 0.23 TCGA-MN-A4N1-01 10 18787350 18787350 C G CACNB2 Missense_Mutation p.P134A 0.07 deleterious(0) probably_damaging(0.989) TCGA-MN-A4N1-01 10 24762443 24762443 A G KIAA1217 Missense_Mutation p.D378G 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-MN-A4N1-01 10 25877959 25877959 G C GPR158 Missense_Mutation p.G593R 0.38 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N1-01 10 25888130 25888130 C A GPR158 Missense_Mutation p.A1192D 0.36 tolerated_low_confidence(0.19) benign(0.008) TCGA-MN-A4N1-01 10 26849658 26849658 G T APBB1IP Splice_Site p.X419_splice 0.25 TCGA-MN-A4N1-01 10 27335364 27335364 C G ANKRD26 Missense_Mutation p.G635R 0.25 deleterious(0.04) benign(0.014) TCGA-MN-A4N1-01 10 45499096 45499096 C T ZNF22 Nonsense_Mutation p.Q94* 0.14 TCGA-MN-A4N1-01 10 50530794 50530794 C - C10orf71 Frame_Shift_Del p.Q69Rfs*65 0.13 TCGA-MN-A4N1-01 10 50532488 50532488 G A C10orf71 Missense_Mutation p.C633Y 0.27 tolerated(0.78) benign(0.156) TCGA-MN-A4N1-01 10 55587194 55587194 C A PCDH15 Silent p.P1442P 0.31 TCGA-MN-A4N1-01 10 68687123 68687123 C A LRRTM3 Missense_Mutation p.S150Y 0.32 deleterious(0) possibly_damaging(0.903) TCGA-MN-A4N1-01 10 70246956 70246956 C A SLC25A16 Missense_Mutation p.V263L 0.17 deleterious(0.01) benign(0.264) TCGA-MN-A4N1-01 10 7214087 7214087 C T SFMBT2 Missense_Mutation p.D729N 0.53 deleterious(0.03) benign(0.287) TCGA-MN-A4N1-01 10 72534009 72534009 C A TBATA Missense_Mutation p.V293L 0.50 tolerated(0.38) benign(0.004) TCGA-MN-A4N1-01 10 73521611 73521611 C G C10orf54 Missense_Mutation p.E85D 0.06 tolerated(0.22) benign(0.013) TCGA-MN-A4N1-01 10 85971437 85971437 G T CDHR1 Missense_Mutation p.V507L 0.07 tolerated(0.19) benign(0.277) TCGA-MN-A4N1-01 10 85971440 85971440 A G CDHR1 Missense_Mutation p.K508E 0.07 tolerated(0.06) benign(0.082) TCGA-MN-A4N1-01 10 90429697 90429697 A G LIPF Missense_Mutation p.T186A 0.27 deleterious(0.03) possibly_damaging(0.476) TCGA-MN-A4N1-01 10 92509074 92509074 G T HTR7 Missense_Mutation p.H273N 0.07 deleterious(0.01) probably_damaging(0.95) TCGA-MN-A4N1-01 10 95134609 95134609 C T MYOF Missense_Mutation p.V738M 0.41 tolerated(0.1) benign(0.013) TCGA-MN-A4N1-01 10 98138814 98138814 G A TLL2 Nonsense_Mutation p.Q744* 0.33 TCGA-MN-A4N1-01 11 102743720 102743720 C A MMP12 RNA 0.29 TCGA-MN-A4N1-01 11 105880228 105880228 T A MSANTD4 3'UTR 0.21 TCGA-MN-A4N1-01 11 107526690 107526690 A G ELMOD1 Missense_Mutation p.T244A 0.28 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N1-01 11 111749769 111749769 G A FDXACB1 Missense_Mutation p.L30F 0.12 deleterious(0.04) benign(0.119) TCGA-MN-A4N1-01 11 111952619 111952619 A G C11orf57 Intron 0.53 TCGA-MN-A4N1-01 11 113935191 113935191 A T ZBTB16 Missense_Mutation p.E390V 0.12 deleterious(0) possibly_damaging(0.544) TCGA-MN-A4N1-01 11 117308726 117308726 G A DSCAML1 Silent p.S1499S 0.31 TCGA-MN-A4N1-01 11 118242371 118242371 C A UBE4A Missense_Mutation p.A184D 0.35 tolerated(0.06) benign(0.206) TCGA-MN-A4N1-01 11 123900399 123900399 C A OR10G8 Missense_Mutation p.P24T 0.28 tolerated(0.51) benign(0.001) TCGA-MN-A4N1-01 11 128781998 128781998 C A KCNJ5 Missense_Mutation p.S277Y 0.45 deleterious(0) probably_damaging(0.975) TCGA-MN-A4N1-01 11 134090506 134090506 C G NCAPD3 Missense_Mutation p.S60T 0.26 tolerated(0.24) benign(0.011) TCGA-MN-A4N1-01 11 21581802 21581802 G A NELL1 Silent p.G618G 0.52 TCGA-MN-A4N1-01 11 2436377 2436377 C A TRPM5 Missense_Mutation p.G485C 0.90 tolerated(0.22) possibly_damaging(0.735) TCGA-MN-A4N1-01 11 24750759 24750759 A T LUZP2 Missense_Mutation p.K36M 0.68 tolerated(0.11) possibly_damaging(0.81) TCGA-MN-A4N1-01 11 27076976 27076976 A T BBOX1 5'UTR 0.07 TCGA-MN-A4N1-01 11 27528284 27528284 C A LIN7C Nonsense_Mutation p.E6* 0.07 TCGA-MN-A4N1-01 11 30942363 30942363 C A DCDC1 Nonsense_Mutation p.E1085* 0.56 TCGA-MN-A4N1-01 11 48238825 48238825 T G OR4B1 Missense_Mutation p.I155R 0.43 deleterious(0) benign(0.278) TCGA-MN-A4N1-01 11 55065400 55065400 A T TRIM51HP RNA 0.22 TCGA-MN-A4N1-01 11 55065648 55065648 C A TRIM51HP RNA 0.46 TCGA-MN-A4N1-01 11 55406034 55406034 C G OR4P4 Silent p.S67S 0.72 TCGA-MN-A4N1-01 11 55406035 55406035 G A OR4P4 Missense_Mutation p.D68N 0.72 deleterious(0.01) possibly_damaging(0.907) TCGA-MN-A4N1-01 11 55418589 55418589 T G OR4S2 Missense_Mutation p.C70W 0.04 deleterious(0.01) possibly_damaging(0.867) TCGA-MN-A4N1-01 11 55798754 55798754 C A OR5AS1 Missense_Mutation p.P287Q 0.47 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N1-01 11 55944161 55944162 - A OR5J2 Frame_Shift_Ins p.A25Sfs*97 0.20 TCGA-MN-A4N1-01 11 56143193 56143193 T G OR8U1 Missense_Mutation p.L32V 0.07 deleterious(0.01) benign(0.41) TCGA-MN-A4N1-01 11 57798838 57798838 T - OR6Q1 Frame_Shift_Del p.F139Lfs*17 0.29 TCGA-MN-A4N1-01 11 58275334 58275334 G C OR5B21 Missense_Mutation p.A82G 0.40 tolerated_low_confidence(1) benign(0.257) TCGA-MN-A4N1-01 11 58892865 58892865 A T FAM111B Missense_Mutation p.N432I 0.49 deleterious(0.03) benign(0.418) TCGA-MN-A4N1-01 11 58920302 58920302 A T FAM111A Silent p.I387I 0.20 TCGA-MN-A4N1-01 11 59211014 59211014 C A OR5A1 Silent p.R125R 0.23 TCGA-MN-A4N1-01 11 59834550 59834550 C A MS4A3 Missense_Mutation p.P160T 0.34 tolerated(0.13) possibly_damaging(0.688) TCGA-MN-A4N1-01 11 60150733 60150733 G T MS4A7 Missense_Mutation p.G40V 0.43 tolerated(0.24) benign(0.045) TCGA-MN-A4N1-01 11 60150734 60150734 G T MS4A7 Silent p.G40G 0.43 TCGA-MN-A4N1-01 11 64369044 64369044 G T SLC22A12 3'UTR 0.22 TCGA-MN-A4N1-01 11 65268260 65268262 TGT - MALAT1 RNA 0.10 TCGA-MN-A4N1-01 11 65268734 65268734 T A MALAT1 RNA 0.09 TCGA-MN-A4N1-01 11 68031265 68031265 C G C11orf24 5'UTR 0.08 TCGA-MN-A4N1-01 11 68564363 68564363 T A CPT1A Silent p.G244G 0.77 TCGA-MN-A4N1-01 11 68704180 68704180 G T IGHMBP2 Missense_Mutation p.L744F 0.12 deleterious(0.04) probably_damaging(0.991) TCGA-MN-A4N1-01 11 85989077 85989077 C G EED Intron 0.13 TCGA-MN-A4N1-01 12 100787245 100787245 T A SLC17A8 Missense_Mutation p.L191Q 0.52 deleterious(0) probably_damaging(1) TCGA-MN-A4N1-01 12 10464060 10464060 C G KLRD1 Intron 0.10 TCGA-MN-A4N1-01 12 10525605 10525605 G C KLRK1 3'UTR 0.21 TCGA-MN-A4N1-01 12 108939030 108939030 T A SART3 Missense_Mutation p.K205I 0.55 deleterious(0.01) probably_damaging(0.928) TCGA-MN-A4N1-01 12 111742115 111742115 T A CUX2 Missense_Mutation p.S285R 0.15 deleterious(0.03) benign(0.355) TCGA-MN-A4N1-01 12 121891037 121891037 C G KDM2B Missense_Mutation p.K615N 0.29 deleterious(0) probably_damaging(0.952) TCGA-MN-A4N1-01 12 122684751 122684751 C T LRRC43 Silent p.S455S 0.14 TCGA-MN-A4N1-01 12 130841621 130841621 C A PIWIL1 Silent p.A521A 0.14 TCGA-MN-A4N1-01 12 2692049 2692049 C A CACNA1C Missense_Mutation p.P722H 0.41 deleterious(0.01) probably_damaging(0.996) TCGA-MN-A4N1-01 12 2692050 2692050 C A CACNA1C Silent p.P722P 0.41 TCGA-MN-A4N1-01 12 29639225 29639225 G C OVCH1 Missense_Mutation p.L317V 0.06 tolerated(0.27) benign(0.221) TCGA-MN-A4N1-01 12 29670432 29670432 G T TMTC1 Nonsense_Mutation p.Y699* 0.42 TCGA-MN-A4N1-01 12 48368090 48368090 C A COL2A1 Missense_Mutation p.A1367S 0.52 unknown(0) TCGA-MN-A4N1-01 12 48483056 48483056 C G SENP1 Intron 0.47 TCGA-MN-A4N1-01 12 53566323 53566323 C A CSAD Missense_Mutation p.R106L 0.37 deleterious(0) benign(0.253) TCGA-MN-A4N1-01 12 57058178 57058178 C G PTGES3 3'UTR 0.12 TCGA-MN-A4N1-01 12 57327752 57327752 G T SDR9C7 Silent p.G98G 0.61 TCGA-MN-A4N1-01 12 58022045 58022045 C A B4GALNT1 Missense_Mutation p.G335C 0.08 deleterious(0) probably_damaging(1) TCGA-MN-A4N1-01 12 6143899 6143899 C A VWF Silent p.G880G 0.26 TCGA-MN-A4N1-01 12 64519928 64519928 T C SRGAP1 Missense_Mutation p.V799A 0.41 deleterious(0.01) possibly_damaging(0.665) TCGA-MN-A4N1-01 12 78400736 78400736 G - NAV3 Frame_Shift_Del p.D474Tfs*18 0.37 TCGA-MN-A4N1-01 12 81568566 81568566 G - ACSS3 Splice_Site p.X367_splice 0.17 TCGA-MN-A4N1-01 12 88568433 88568433 C A TMTC3 Missense_Mutation p.H417N 0.52 deleterious(0.03) benign(0.119) TCGA-MN-A4N1-01 13 102231698 102231698 G T ITGBL1 Missense_Mutation p.C216F 0.60 deleterious(0) probably_damaging(1) TCGA-MN-A4N1-01 13 113768213 113768213 C A F7 Missense_Mutation p.D123E 0.60 deleterious(0.04) possibly_damaging(0.776) TCGA-MN-A4N1-01 13 21565415 21565415 G A LATS2 Silent p.S157S 0.54 TCGA-MN-A4N1-01 13 23905531 23905531 C A SACS Missense_Mutation p.A4162S 0.61 benign(0.007) TCGA-MN-A4N1-01 13 48542854 48542854 C A SUCLA2 Missense_Mutation p.M226I 0.17 tolerated(0.11) benign(0.247) TCGA-MN-A4N1-01 13 76287385 76287385 G T RP11-29G8.3 RNA 0.74 TCGA-MN-A4N1-01 13 77669555 77669555 T A MYCBP2 Missense_Mutation p.K3341N 0.35 probably_damaging(0.957) TCGA-MN-A4N1-01 13 79177451 79177451 A T POU4F1 Missense_Mutation p.M4K 0.48 deleterious_low_confidence(0) possibly_damaging(0.84) TCGA-MN-A4N1-01 13 95264515 95264515 T C GPR180 Missense_Mutation p.Y126H 0.12 deleterious(0) probably_damaging(0.996) TCGA-MN-A4N1-01 14 106321881 106321881 G - IGHM Frame_Shift_Del p.P118Hfs*61 0.11 TCGA-MN-A4N1-01 14 106962979 106962979 C A IGHV1-45 Missense_Mutation p.E101D 0.07 tolerated(0.06) benign(0.162) TCGA-MN-A4N1-01 14 107048839 107048839 C A IGHV3-53 Missense_Mutation p.G61W 0.06 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-MN-A4N1-01 14 23609766 23609766 G A SLC7A8 Silent p.V234V 0.11 TCGA-MN-A4N1-01 14 23829249 23829249 C A EFS Splice_Site p.X147_splice 0.43 TCGA-MN-A4N1-01 14 23876264 23876264 C A MYH6 Missense_Mutation p.G57C 0.12 deleterious(0) possibly_damaging(0.796) TCGA-MN-A4N1-01 14 23884888 23884888 C A MYH7 Nonsense_Mutation p.E1703* 0.19 TCGA-MN-A4N1-01 14 23902905 23902905 C T MYH7 Missense_Mutation p.A13T 0.48 deleterious(0.01) possibly_damaging(0.663) TCGA-MN-A4N1-01 14 28733993 28733993 A C BNIP3P1 RNA 0.08 TCGA-MN-A4N1-01 14 42355926 42355926 T C LRFN5 Missense_Mutation p.L33P 0.66 deleterious(0.02) probably_damaging(0.984) TCGA-MN-A4N1-01 14 44974188 44974188 G T FSCB Missense_Mutation p.A668D 0.61 tolerated(0.13) unknown(0) TCGA-MN-A4N1-01 14 52520995 52520995 C G NID2 Missense_Mutation p.G271A 0.13 deleterious(0.01) probably_damaging(0.972) TCGA-MN-A4N1-01 14 58827655 58827655 G T ARID4A Nonsense_Mutation p.E659* 0.06 TCGA-MN-A4N1-01 14 59113725 59113725 C T DACT1 Missense_Mutation p.T795M 0.09 tolerated(0.1) possibly_damaging(0.711) TCGA-MN-A4N1-01 14 61187137 61187137 T A SIX4 Missense_Mutation p.E297V 0.17 deleterious(0) probably_damaging(0.978) TCGA-MN-A4N1-01 14 62463176 62463176 C A SYT16 Missense_Mutation p.L147I 0.11 tolerated_low_confidence(0.37) benign(0.073) TCGA-MN-A4N1-01 14 70924374 70924374 G A ADAM21 Missense_Mutation p.R53K 0.05 tolerated(0.13) benign(0.049) TCGA-MN-A4N1-01 14 71540488 71540488 G T PCNX Silent p.R1693R 0.42 TCGA-MN-A4N1-01 14 92471367 92471367 C A TRIP11 Missense_Mutation p.D985Y 0.07 tolerated(0.18) possibly_damaging(0.632) TCGA-MN-A4N1-01 14 93673329 93673329 C T C14orf142 Silent p.R18R 0.22 TCGA-MN-A4N1-01 14 94083515 94083515 G A UNC79 Silent p.V1186V 0.20 TCGA-MN-A4N1-01 14 94964292 94964292 C T SERPINA12 Missense_Mutation p.R148H 0.04 deleterious(0.01) possibly_damaging(0.586) TCGA-MN-A4N1-01 14 95035766 95035766 C A SERPINA4 Missense_Mutation p.A373D 0.11 tolerated(0.3) benign(0.25) TCGA-MN-A4N1-01 14 95081184 95081184 A T SERPINA3 Missense_Mutation p.S136C 0.56 deleterious(0) probably_damaging(0.956) TCGA-MN-A4N1-01 14 95584083 95584083 T C DICER1 Missense_Mutation p.K462R 0.12 tolerated(0.14) possibly_damaging(0.492) TCGA-MN-A4N1-01 15 101170282 101170282 T A ASB7 Intron 0.45 TCGA-MN-A4N1-01 15 35275603 35275603 C A ZNF770 Missense_Mutation p.K11N 0.48 deleterious(0) probably_damaging(0.997) TCGA-MN-A4N1-01 15 69696023 69696023 C A PAQR5 Silent p.A285A 0.55 TCGA-MN-A4N1-01 15 74653930 74653930 C A CYP11A1 Intron 0.52 TCGA-MN-A4N1-01 15 75047189 75047189 C A CYP1A2 Silent p.G437G 0.32 TCGA-MN-A4N1-01 15 85147051 85147051 C T ZSCAN2 Intron 0.50 TCGA-MN-A4N1-01 15 91519973 91519973 G A PRC1 Missense_Mutation p.T379I 0.56 tolerated(0.1) benign(0.003) TCGA-MN-A4N1-01 16 10846519 10846519 G C NUBP1 Missense_Mutation p.G104A 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-MN-A4N1-01 16 16278829 16278829 G C ABCC6 Missense_Mutation p.P644A 0.29 deleterious(0.03) benign(0.001) TCGA-MN-A4N1-01 16 2013170 2013170 C A RPS2 Missense_Mutation p.G119C 0.23 deleterious(0) probably_damaging(1) TCGA-MN-A4N1-01 16 20634759 20634759 G A ACSM1 3'UTR 0.07 TCGA-MN-A4N1-01 16 20966243 20966243 G A DNAH3 Missense_Mutation p.P3655S 0.11 tolerated(0.08) benign(0.1) TCGA-MN-A4N1-01 16 23721519 23721519 C G ERN2 Missense_Mutation p.G142R 0.26 deleterious(0) probably_damaging(0.992) TCGA-MN-A4N1-01 16 29115246 29115246 G T CTB-134H23.3 RNA 0.40 TCGA-MN-A4N1-01 16 30733960 30733960 G T SRCAP Missense_Mutation p.Q1261H 0.05 unknown(0) TCGA-MN-A4N1-01 16 32264777 32264777 G A TP53TG3D Missense_Mutation p.G35R 0.21 tolerated_low_confidence(0.22) probably_damaging(0.98) TCGA-MN-A4N1-01 16 3454806 3454806 G T ZNF174 Intron 0.14 TCGA-MN-A4N1-01 16 51175028 51175028 C T SALL1 Missense_Mutation p.A369T 0.31 tolerated(0.47) benign(0.05) TCGA-MN-A4N1-01 16 57415950 57415950 C A CX3CL1 Missense_Mutation p.T67K 0.19 deleterious(0) probably_damaging(1) TCGA-MN-A4N1-01 16 58750695 58750695 A G GOT2 Missense_Mutation p.F242S 0.33 deleterious(0) probably_damaging(0.989) TCGA-MN-A4N1-01 16 67314995 67314995 C T PLEKHG4 Missense_Mutation p.P241S 0.55 tolerated(0.09) benign(0.022) TCGA-MN-A4N1-01 16 68010120 68010120 C T DPEP3 Missense_Mutation p.G394E 0.31 deleterious(0.03) probably_damaging(0.924) TCGA-MN-A4N1-01 16 76569582 76569582 G T CNTNAP4 Missense_Mutation p.G893W 0.60 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N1-01 16 77850840 77850840 A C VAT1L Missense_Mutation p.M86L 0.12 tolerated(0.21) possibly_damaging(0.869) TCGA-MN-A4N1-01 16 85946784 85946784 G T IRF8 Silent p.P165P 0.07 TCGA-MN-A4N1-01 17 10429113 10429113 G A MYH2 Missense_Mutation p.T1423M 0.21 deleterious(0.02) probably_damaging(0.983) TCGA-MN-A4N1-01 17 18541189 18541189 C G TBC1D28 Missense_Mutation p.R162T 0.06 deleterious(0) probably_damaging(0.93) TCGA-MN-A4N1-01 17 3119153 3119153 A G OR1A1 Missense_Mutation p.K80R 0.62 deleterious(0.01) benign(0.077) TCGA-MN-A4N1-01 17 32961855 32961855 G T TMEM132E Nonsense_Mutation p.E486* 0.33 TCGA-MN-A4N1-01 17 39134323 39134323 G T KRT40 3'UTR 0.23 TCGA-MN-A4N1-01 17 39728094 39728094 T A KRT9 Missense_Mutation p.S51C 0.48 tolerated_low_confidence(0.05) unknown(0) TCGA-MN-A4N1-01 17 40003661 40003661 C A KLHL10 Missense_Mutation p.A484E 0.11 deleterious(0.03) probably_damaging(0.995) TCGA-MN-A4N1-01 17 40344665 40344665 G A GHDC Silent p.P161P 0.21 TCGA-MN-A4N1-01 17 41243708 41243708 A G BRCA1 Silent p.S1280S 0.46 TCGA-MN-A4N1-01 17 41836155 41836155 C A SOST 5'UTR 0.20 TCGA-MN-A4N1-01 17 41926320 41926320 G T CD300LG Intron 0.18 TCGA-MN-A4N1-01 17 46607999 46607999 T A HOXB1 Missense_Mutation p.S90C 0.11 tolerated(0.11) possibly_damaging(0.779) TCGA-MN-A4N1-01 17 48673997 48673997 G T CACNA1G Missense_Mutation p.K1018N 0.44 tolerated(0.09) possibly_damaging(0.767) TCGA-MN-A4N1-01 17 49197817 49197817 C T SPAG9 Silent p.Q67Q 0.16 TCGA-MN-A4N1-01 17 57262910 57262910 A T PRR11 Missense_Mutation p.Q130L 0.40 deleterious(0) possibly_damaging(0.904) TCGA-MN-A4N1-01 17 59885879 59885879 G A BRIP1 Silent p.V289V 0.20 TCGA-MN-A4N1-01 17 67031487 67031487 C A ABCA9 Missense_Mutation p.G343V 0.17 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N1-01 17 72351480 72351480 C G KIF19 3'UTR 0.18 TCGA-MN-A4N1-01 17 7577082 7577082 C G TP53 Missense_Mutation p.E286Q 0.74 deleterious(0) probably_damaging(0.98) TCGA-MN-A4N1-01 18 11864539 11864539 T C GNAL Missense_Mutation p.L262P 0.13 deleterious(0) probably_damaging(1) TCGA-MN-A4N1-01 18 13645527 13645527 C T LDLRAD4 Silent p.G264G 0.12 TCGA-MN-A4N1-01 18 19995574 19995574 G T CTAGE1 Missense_Mutation p.P734Q 0.25 tolerated(0.13) benign(0) TCGA-MN-A4N1-01 18 2763714 2763714 C G SMCHD1 Missense_Mutation p.T1549S 0.09 tolerated(0.88) benign(0.002) TCGA-MN-A4N1-01 18 28742602 28742602 C T DSC1 5'UTR 0.23 TCGA-MN-A4N1-01 18 29056235 29056235 T A DSG3 3'UTR 0.21 TCGA-MN-A4N1-01 18 30518001 30518001 C A CCDC178 Missense_Mutation p.D860Y 0.20 deleterious(0) probably_damaging(0.977) TCGA-MN-A4N1-01 18 44260188 44260188 C A ST8SIA5 Silent p.V316V 0.31 TCGA-MN-A4N1-01 18 54694330 54694330 G T WDR7 Silent p.A1455A 0.19 TCGA-MN-A4N1-01 18 61018170 61018170 G T KDSR Missense_Mutation p.S187Y 0.37 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N1-01 18 61256037 61256037 C A SERPINB13 Silent p.R46R 0.10 TCGA-MN-A4N1-01 18 61323175 61323175 C T SERPINB3 Missense_Mutation p.D297N 0.36 tolerated(0.5) benign(0.008) TCGA-MN-A4N1-01 18 77170563 77170563 G C NFATC1 Silent p.G83G 0.35 TCGA-MN-A4N1-01 18 77474522 77474522 G A CTDP1 Silent p.E354E 0.28 TCGA-MN-A4N1-01 18 77895876 77895876 G T ADNP2 Missense_Mutation p.R860S 0.22 tolerated(0.07) probably_damaging(0.98) TCGA-MN-A4N1-01 19 10112289 10112289 T A COL5A3 Missense_Mutation p.R341W 0.29 unknown(0) TCGA-MN-A4N1-01 19 1376597 1376597 C T MUM1 3'UTR 0.17 TCGA-MN-A4N1-01 19 14698430 14698430 C A CLEC17A Silent p.T42T 0.37 TCGA-MN-A4N1-01 19 14707945 14707945 C A CLEC17A Missense_Mutation p.S206R 0.29 tolerated(0.07) benign(0.383) TCGA-MN-A4N1-01 19 16514615 16514615 T G EPS15L1 Missense_Mutation p.I519L 0.34 tolerated(0.75) benign(0.008) TCGA-MN-A4N1-01 19 18378365 18378365 T G KIAA1683 Intron 0.16 TCGA-MN-A4N1-01 19 18780076 18780076 C G KLHL26 3'UTR 0.39 TCGA-MN-A4N1-01 19 19751333 19751333 C T GMIP Missense_Mutation p.A96T 0.19 tolerated(0.25) benign(0.05) TCGA-MN-A4N1-01 19 19766876 19766876 G A ATP13A1 Silent p.T400T 0.21 TCGA-MN-A4N1-01 19 24010340 24010340 A T RPSAP58 Missense_Mutation p.D126V 0.10 deleterious(0.02) possibly_damaging(0.561) TCGA-MN-A4N1-01 19 34791292 34791292 A C KIAA0355 5'UTR 0.24 TCGA-MN-A4N1-01 19 35435441 35435441 G A ZNF30 Missense_Mutation p.G525D 0.15 tolerated(0.14) possibly_damaging(0.566) TCGA-MN-A4N1-01 19 36273517 36273517 G T ARHGAP33 Missense_Mutation p.G417W 0.59 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-MN-A4N1-01 19 39898663 39898663 C T ZFP36 Missense_Mutation p.S108L 0.12 deleterious(0) possibly_damaging(0.642) TCGA-MN-A4N1-01 19 40368822 40368822 C A FCGBP Missense_Mutation p.V4176L 0.24 benign(0.299) TCGA-MN-A4N1-01 19 4207939 4207939 C T ANKRD24 Missense_Mutation p.A269V 0.23 deleterious(0.02) possibly_damaging(0.75) TCGA-MN-A4N1-01 19 43244502 43244502 C A PSG3 Missense_Mutation p.R12L 0.56 tolerated(0.69) benign(0.004) TCGA-MN-A4N1-01 19 4433137 4433137 G T CHAF1A Missense_Mutation p.Q758H 0.11 deleterious(0) probably_damaging(0.989) TCGA-MN-A4N1-01 19 4954450 4954450 G T UHRF1 RNA 0.19 TCGA-MN-A4N1-01 19 51563874 51563874 C G KLK13 Missense_Mutation p.V19L 0.62 tolerated(0.67) benign(0.001) TCGA-MN-A4N1-01 19 51918538 51918538 G T SIGLEC10 Silent p.V409V 0.74 TCGA-MN-A4N1-01 19 52001407 52001407 G T SIGLEC12 Missense_Mutation p.Q424K 0.74 tolerated(0.21) benign(0.173) TCGA-MN-A4N1-01 19 53762759 53762759 C A VN1R2 Silent p.L377L 0.05 TCGA-MN-A4N1-01 19 55672062 55672062 C T DNAAF3 Missense_Mutation p.G400R 0.53 tolerated(0.12) benign(0.099) TCGA-MN-A4N1-01 19 6418059 6418059 C A KHSRP Missense_Mutation p.R304L 0.36 deleterious(0.01) benign(0.361) TCGA-MN-A4N1-01 19 8564088 8564088 G T PRAM1 Missense_Mutation p.P202T 0.34 tolerated(0.09) possibly_damaging(0.772) TCGA-MN-A4N1-01 19 8808686 8808686 C T ACTL9 Nonsense_Mutation p.W122* 0.39 TCGA-MN-A4N1-01 19 9073257 9073257 T A MUC16 Missense_Mutation p.D4730V 0.38 unknown(0) TCGA-MN-A4N1-01 19 9074248 9074248 C A MUC16 Missense_Mutation p.G4400C 0.20 unknown(0) TCGA-MN-A4N1-01 19 9077662 9077662 G T MUC16 Missense_Mutation p.L3262M 0.37 unknown(0) TCGA-MN-A4N1-01 19 9084409 9084409 G T MUC16 Missense_Mutation p.S2469Y 0.13 unknown(0) TCGA-MN-A4N1-01 1 110031523 110031523 G T ATXN7L2 Missense_Mutation p.V280L 0.05 tolerated(0.23) probably_damaging(0.978) TCGA-MN-A4N1-01 1 111434074 111434074 T A CD53 Missense_Mutation p.F15Y 0.32 tolerated(0.32) possibly_damaging(0.511) TCGA-MN-A4N1-01 1 117311268 117311268 C T CD2 Nonsense_Mutation p.Q307* 0.04 TCGA-MN-A4N1-01 1 118479440 118479440 C T WDR3 Missense_Mutation p.R144C 0.25 deleterious(0) probably_damaging(1) TCGA-MN-A4N1-01 1 120437986 120437986 A G ADAM30 Missense_Mutation p.L325P 0.30 tolerated(0.4) benign(0.006) TCGA-MN-A4N1-01 1 147230606 147230606 C T GJA5 Silent p.K247K 0.49 TCGA-MN-A4N1-01 1 152193469 152193469 G T HRNR Silent p.S212S 0.28 TCGA-MN-A4N1-01 1 153933029 153933029 T C SLC39A1 Missense_Mutation p.T174A 0.45 tolerated(1) benign(0.001) TCGA-MN-A4N1-01 1 154099826 154099826 G T NUP210L Missense_Mutation p.D382E 0.20 tolerated(1) benign(0.004) TCGA-MN-A4N1-01 1 155920787 155920787 G A ARHGEF2 Missense_Mutation p.R846W 0.50 deleterious(0.01) probably_damaging(0.995) TCGA-MN-A4N1-01 1 156696732 156696732 A C ISG20L2 Missense_Mutation p.V238G 0.21 tolerated(0.16) benign(0.387) TCGA-MN-A4N1-01 1 158435749 158435749 C A OR10K1 Nonsense_Mutation p.S133* 0.42 TCGA-MN-A4N1-01 1 158585162 158585162 C T SPTA1 Missense_Mutation p.R2211H 0.21 tolerated(0.14) benign(0.099) TCGA-MN-A4N1-01 1 165182954 165182954 G T LMX1A Missense_Mutation p.P198Q 0.19 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N1-01 1 16817159 16817159 C T CROCCP3 RNA 0.33 TCGA-MN-A4N1-01 1 16892177 16892177 G A NBPF1 Silent p.S1005S 0.03 TCGA-MN-A4N1-01 1 17250952 17250952 A T CROCC Missense_Mutation p.K110M 0.08 probably_damaging(1) TCGA-MN-A4N1-01 1 176863698 176863698 C A ASTN1 Missense_Mutation p.R980S 0.10 deleterious(0.01) benign(0.054) TCGA-MN-A4N1-01 1 176918415 176918415 C G ASTN1 Missense_Mutation p.D654H 0.25 deleterious(0) probably_damaging(1) TCGA-MN-A4N1-01 1 176927608 176927608 T A ASTN1 Missense_Mutation p.T537S 0.19 tolerated(0.87) benign(0.056) TCGA-MN-A4N1-01 1 178490224 178490224 G A TEX35 Intron 0.37 TCGA-MN-A4N1-01 1 179530469 179530469 T C NPHS2 Missense_Mutation p.I136V 0.21 tolerated(0.28) benign(0.129) TCGA-MN-A4N1-01 1 181765911 181765911 G T CACNA1E Missense_Mutation p.G2106W 0.25 tolerated(0.18) probably_damaging(0.984) TCGA-MN-A4N1-01 1 186275545 186275545 A T PRG4 Nonsense_Mutation p.K232* 0.25 TCGA-MN-A4N1-01 1 186283048 186283048 T C TPR 3'UTR 0.37 TCGA-MN-A4N1-01 1 18809504 18809504 G T KLHDC7A Missense_Mutation p.G677C 0.28 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N1-01 1 193149616 193149616 G T B3GALT2 Silent p.P359P 0.27 TCGA-MN-A4N1-01 1 19441958 19441958 G A UBR4 Missense_Mutation p.S3666L 0.24 possibly_damaging(0.885) TCGA-MN-A4N1-01 1 197072651 197072651 C A ASPM Missense_Mutation p.M1910I 0.53 tolerated(0.06) possibly_damaging(0.589) TCGA-MN-A4N1-01 1 200587358 200587358 C A KIF14 Missense_Mutation p.R165M 0.37 deleterious(0.03) benign(0.104) TCGA-MN-A4N1-01 1 201182428 201182428 G T IGFN1 Nonsense_Mutation p.E2803* 0.36 TCGA-MN-A4N1-01 1 205687434 205687434 C G NUCKS1 Missense_Mutation p.D236H 0.15 deleterious(0.02) probably_damaging(0.934) TCGA-MN-A4N1-01 1 210329137 210329137 A T SYT14 Missense_Mutation p.E457D 0.29 tolerated(0.05) benign(0.005) TCGA-MN-A4N1-01 1 213415084 213415084 C G RPS6KC1 Silent p.P755P 0.22 TCGA-MN-A4N1-01 1 214814252 214814252 G T CENPF Silent p.V857V 0.27 TCGA-MN-A4N1-01 1 215777545 215777545 C T KCTD3 Missense_Mutation p.P404S 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-MN-A4N1-01 1 223177007 223177007 G A DISP1 Silent p.R756R 0.27 TCGA-MN-A4N1-01 1 231339757 231339757 G C TRIM67 Missense_Mutation p.R560P 0.36 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N1-01 1 235612115 235612115 C A TBCE 3'UTR 0.28 TCGA-MN-A4N1-01 1 237947801 237947801 C A RYR2 Missense_Mutation p.S4263R 0.12 benign(0.273) TCGA-MN-A4N1-01 1 237948065 237948065 G T RYR2 Missense_Mutation p.R4351S 0.47 benign(0.067) TCGA-MN-A4N1-01 1 238090349 238090349 G - RP11-193H5.1 RNA 0.23 TCGA-MN-A4N1-01 1 242162078 242162078 C T MAP1LC3C Silent p.P38P 0.26 TCGA-MN-A4N1-01 1 244218218 244218218 G T ZBTB18 Missense_Mutation p.C381F 0.24 deleterious(0.01) probably_damaging(0.978) TCGA-MN-A4N1-01 1 247875417 247875417 G A OR6F1 Missense_Mutation p.T214I 0.42 tolerated(0.08) possibly_damaging(0.768) TCGA-MN-A4N1-01 1 248262775 248262775 T C OR2L13 Missense_Mutation p.I33T 0.45 tolerated(0.06) benign(0.046) TCGA-MN-A4N1-01 1 248616860 248616860 G T OR2T2 Silent p.G254G 0.18 TCGA-MN-A4N1-01 1 248790395 248790395 A T OR2T11 Missense_Mutation p.L12Q 0.23 deleterious(0.01) probably_damaging(0.91) TCGA-MN-A4N1-01 1 248801801 248801801 C A OR2T35 Silent p.G253G 0.19 TCGA-MN-A4N1-01 1 32842197 32842197 C T BSDC1 Silent p.V291V 0.24 TCGA-MN-A4N1-01 1 34037283 34037283 G T CSMD2 Silent p.G2604G 0.28 TCGA-MN-A4N1-01 1 34209180 34209180 G T CSMD2 Missense_Mutation p.P585Q 0.26 deleterious(0) probably_damaging(0.986) TCGA-MN-A4N1-01 1 3646622 3646622 G T TP73 Missense_Mutation p.G419W 0.31 deleterious(0) probably_damaging(0.974) TCGA-MN-A4N1-01 1 37267332 37267332 C G GRIK3 3'UTR 0.31 TCGA-MN-A4N1-01 1 43748474 43748474 C G C1orf210 Missense_Mutation p.R108S 0.40 deleterious(0) possibly_damaging(0.616) TCGA-MN-A4N1-01 1 43788393 43788393 A G TIE1 Nonstop_Mutation p.*1139Wext*29 0.16 TCGA-MN-A4N1-01 1 44035402 44035402 C T PTPRF Missense_Mutation p.P174L 0.12 deleterious(0) probably_damaging(1) TCGA-MN-A4N1-01 1 47685826 47685826 G A TAL1 Missense_Mutation p.R188W 0.09 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N1-01 1 47717292 47717292 C A STIL Missense_Mutation p.G1128V 0.26 deleterious(0) probably_damaging(1) TCGA-MN-A4N1-01 1 62675956 62675956 C A L1TD1 Missense_Mutation p.R504S 0.11 tolerated(0.42) benign(0.003) TCGA-MN-A4N1-01 1 67724866 67724866 T A IL23R 3'UTR 0.15 TCGA-MN-A4N1-01 1 68906661 68906661 G A RPE65 Missense_Mutation p.S173F 0.20 deleterious(0) probably_damaging(0.973) TCGA-MN-A4N1-01 1 70502132 70502132 A T LRRC7 Missense_Mutation p.T667S 0.20 tolerated(0.11) probably_damaging(0.986) TCGA-MN-A4N1-01 1 70728218 70728218 C T ANKRD13C 3'UTR 0.21 TCGA-MN-A4N1-01 1 75038945 75038945 C G C1orf173 Missense_Mutation p.E817Q 0.22 deleterious(0.03) probably_damaging(0.92) TCGA-MN-A4N1-01 1 75602802 75602802 G C LHX8 Silent p.A41A 0.22 TCGA-MN-A4N1-01 1 75602803 75602803 G T LHX8 Missense_Mutation p.G42W 0.23 tolerated_low_confidence(0.06) benign(0.133) TCGA-MN-A4N1-01 1 7737696 7737696 C G CAMTA1 Missense_Mutation p.F939L 0.27 tolerated(0.65) possibly_damaging(0.478) TCGA-MN-A4N1-01 1 8426008 8426008 A G RERE Silent p.Y437Y 0.32 TCGA-MN-A4N1-01 1 85135577 85135577 C A SSX2IP Splice_Site p.X72_splice 0.37 TCGA-MN-A4N1-01 20 2097904 2097904 G T STK35 Missense_Mutation p.R495S 0.24 deleterious(0.05) benign(0.237) TCGA-MN-A4N1-01 20 2321181 2321181 A C TGM3 Missense_Mutation p.K679T 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-MN-A4N1-01 20 2398049 2398049 A G TGM6 Missense_Mutation p.E503G 0.10 tolerated(0.91) benign(0.159) TCGA-MN-A4N1-01 20 29623212 29623212 C A FRG1B Missense_Mutation p.H8Q 0.03 tolerated(0.25) benign(0.046) TCGA-MN-A4N1-01 20 31571647 31571647 G T SUN5 Missense_Mutation p.P365T 0.41 deleterious_low_confidence(0.02) benign(0.147) TCGA-MN-A4N1-01 20 33345891 33345891 G A NCOA6 Silent p.L220L 0.07 TCGA-MN-A4N1-01 20 34144999 34144999 A G ERGIC3 Missense_Mutation p.I356V 0.34 deleterious(0.01) possibly_damaging(0.895) TCGA-MN-A4N1-01 20 35060836 35060836 C A DLGAP4 Missense_Mutation p.P239Q 0.25 tolerated(0.11) probably_damaging(0.988) TCGA-MN-A4N1-01 20 3766380 3766380 G A CENPB Missense_Mutation p.R251C 0.56 deleterious(0) unknown(0) TCGA-MN-A4N1-01 20 46292328 46292328 C T SULF2 Missense_Mutation p.R699Q 0.40 tolerated(0.08) benign(0.206) TCGA-MN-A4N1-01 20 47267577 47267577 G T PREX1 Missense_Mutation p.A891D 0.43 deleterious(0) benign(0.258) TCGA-MN-A4N1-01 20 50140534 50140534 G A NFATC2 Silent p.P82P 0.37 TCGA-MN-A4N1-01 20 50401130 50401130 C A SALL4 Nonsense_Mutation p.G946* 0.27 TCGA-MN-A4N1-01 20 52192683 52192683 C A ZNF217 Missense_Mutation p.G874C 0.21 tolerated(0.19) probably_damaging(0.911) TCGA-MN-A4N1-01 20 55033539 55033539 C T CASS4 Silent p.P699P 0.11 TCGA-MN-A4N1-01 20 57599155 57599155 C G TUBB1 Missense_Mutation p.L225V 0.22 deleterious_low_confidence(0) probably_damaging(0.944) TCGA-MN-A4N1-01 20 57768951 57768951 A T ZNF831 Silent p.G959G 0.15 TCGA-MN-A4N1-01 20 61594070 61594070 G T SLC17A9 Missense_Mutation p.V198L 0.30 tolerated(0.17) benign(0.1) TCGA-MN-A4N1-01 20 61991020 61991020 G T CHRNA4 Silent p.A36A 0.39 TCGA-MN-A4N1-01 20 62493319 62493319 C A ABHD16B Silent p.R142R 0.37 TCGA-MN-A4N1-01 20 62724131 62724131 G T OPRL1 Missense_Mutation p.G20C 0.25 deleterious(0) benign(0.299) TCGA-MN-A4N1-01 20 62839668 62839668 G A MYT1 Missense_Mutation p.M373I 0.31 benign(0.146) TCGA-MN-A4N1-01 20 8698484 8698484 C A PLCB1 Missense_Mutation p.S501Y 0.38 deleterious(0) benign(0.327) TCGA-MN-A4N1-01 20 8862605 8862605 G T PLCB1 3'UTR 0.37 TCGA-MN-A4N1-01 21 22841067 22841067 G T NCAM2 Missense_Mutation p.G620V 0.26 deleterious(0) probably_damaging(1) TCGA-MN-A4N1-01 21 31720819 31720819 C - KRTAP23-1 Frame_Shift_Del p.V36Sfs*7 0.21 TCGA-MN-A4N1-01 21 31802931 31802931 G T KRTAP13-4 Missense_Mutation p.R113I 0.08 deleterious(0) probably_damaging(0.995) TCGA-MN-A4N1-01 21 31971130 31971130 C G KRTAP6-2 Missense_Mutation p.G22R 0.19 unknown(0) TCGA-MN-A4N1-01 21 31971133 31971133 C T KRTAP6-2 Missense_Mutation p.E21K 0.18 unknown(0) TCGA-MN-A4N1-01 21 32253665 32253665 C - KRTAP11-1 Frame_Shift_Del p.C60Sfs*24 0.24 TCGA-MN-A4N1-01 21 32492745 32492745 C A TIAM1 Missense_Mutation p.V1573F 0.26 deleterious_low_confidence(0) possibly_damaging(0.736) TCGA-MN-A4N1-01 21 33064701 33064701 G A SCAF4 Silent p.A525A 0.08 TCGA-MN-A4N1-01 21 34901177 34901177 G T GART Missense_Mutation p.Q264K 0.27 tolerated(0.43) benign(0.003) TCGA-MN-A4N1-01 21 38639552 38639552 A G DSCR3 Missense_Mutation p.V15A 0.09 deleterious(0.01) benign(0.37) TCGA-MN-A4N1-01 21 43412959 43412959 T C ZBTB21 Missense_Mutation p.T416A 0.20 tolerated(0.41) benign(0.003) TCGA-MN-A4N1-01 22 17264927 17264927 C A XKR3 Missense_Mutation p.C321F 0.36 deleterious(0) probably_damaging(0.951) TCGA-MN-A4N1-01 22 22869781 22869781 G A ZNF280A Silent p.V58V 0.25 TCGA-MN-A4N1-01 22 23401674 23401674 C A RTDR1 Missense_Mutation p.R338L 0.32 tolerated(0.14) benign(0.004) TCGA-MN-A4N1-01 22 23915507 23915507 G T IGLL1 Silent p.V196V 0.36 TCGA-MN-A4N1-01 22 32894433 32894433 G T FBXO7 Missense_Mutation p.L495F 0.21 tolerated(0.06) benign(0.03) TCGA-MN-A4N1-01 22 36537881 36537881 G T APOL3 Missense_Mutation p.S192R 0.31 deleterious(0.04) possibly_damaging(0.879) TCGA-MN-A4N1-01 22 40139649 40139649 C A ENTHD1 3'UTR 0.29 TCGA-MN-A4N1-01 22 41305156 41305156 G C XPNPEP3 Missense_Mutation p.D296H 0.04 deleterious(0.01) benign(0.063) TCGA-MN-A4N1-01 2 103128694 103128695 TG - SLC9A4 Frame_Shift_Del p.C509Wfs*13 0.16 TCGA-MN-A4N1-01 2 103281616 103281616 G T SLC9A2 Missense_Mutation p.V271L 0.46 deleterious(0.01) benign(0.331) TCGA-MN-A4N1-01 2 118854203 118854203 A G INSIG2 Missense_Mutation p.Q24R 0.12 tolerated_low_confidence(0.88) benign(0) TCGA-MN-A4N1-01 2 1204889 1204889 G A SNTG2 Missense_Mutation p.R231K 0.68 tolerated(0.12) probably_damaging(0.942) TCGA-MN-A4N1-01 2 128081534 128081534 C - MAP3K2 Frame_Shift_Del p.G261Efs*39 0.41 TCGA-MN-A4N1-01 2 131521277 131521277 G - AMER3 Frame_Shift_Del p.G546Afs*138 0.19 TCGA-MN-A4N1-01 2 136872637 136872637 G T CXCR4 Silent p.T291T 0.21 TCGA-MN-A4N1-01 2 136872638 136872638 G T CXCR4 Missense_Mutation p.T291N 0.21 deleterious(0) probably_damaging(0.974) TCGA-MN-A4N1-01 2 141032060 141032060 C G LRP1B Missense_Mutation p.D4359H 0.20 possibly_damaging(0.861) TCGA-MN-A4N1-01 2 141458082 141458082 C A LRP1B Missense_Mutation p.G2179V 0.44 probably_damaging(0.953) TCGA-MN-A4N1-01 2 141533750 141533750 C A LRP1B Missense_Mutation p.R1806I 0.36 benign(0.308) TCGA-MN-A4N1-01 2 144903179 144903179 C A GTDC1 Nonsense_Mutation p.E103* 0.18 TCGA-MN-A4N1-01 2 149220167 149220167 T C MBD5 Silent p.L44L 0.16 TCGA-MN-A4N1-01 2 152492776 152492776 C A NEB Missense_Mutation p.V3023L 0.62 benign(0.089) TCGA-MN-A4N1-01 2 158617506 158617506 G A ACVR1 Missense_Mutation p.P384S 0.47 deleterious(0) probably_damaging(1) TCGA-MN-A4N1-01 2 160139338 160139338 C A WDSUB1 Missense_Mutation p.W81C 0.23 deleterious(0) probably_damaging(1) TCGA-MN-A4N1-01 2 166245789 166245789 C T SCN2A Silent p.L1825L 0.19 TCGA-MN-A4N1-01 2 169948376 169948376 G T DHRS9 Missense_Mutation p.V217L 0.33 tolerated(0.32) benign(0.003) TCGA-MN-A4N1-01 2 170148851 170148851 G A LRP2 Silent p.F227F 0.09 TCGA-MN-A4N1-01 2 170591670 170591670 A G KLHL23 Missense_Mutation p.H49R 0.41 tolerated(1) benign(0.003) TCGA-MN-A4N1-01 2 179414719 179414719 C A TTN Missense_Mutation p.V30616L 0.21 TCGA-MN-A4N1-01 2 179596215 179596215 T A TTN Missense_Mutation p.T5760S 0.10 TCGA-MN-A4N1-01 2 179658144 179658144 A C TTN Missense_Mutation p.V508G 0.45 TCGA-MN-A4N1-01 2 189916052 189916052 C A COL5A2 Silent p.G975G 0.35 TCGA-MN-A4N1-01 2 197143336 197143336 C A HECW2 Silent p.R1017R 0.23 TCGA-MN-A4N1-01 2 197143337 197143337 C A HECW2 Missense_Mutation p.R1017L 0.23 deleterious(0.02) probably_damaging(1) TCGA-MN-A4N1-01 2 202545744 202545744 G T MPP4 Missense_Mutation p.A249D 0.23 deleterious(0) possibly_damaging(0.873) TCGA-MN-A4N1-01 2 219499220 219499220 T C PLCD4 Missense_Mutation p.I588T 0.19 deleterious(0) possibly_damaging(0.751) TCGA-MN-A4N1-01 2 231177429 231177429 C T SP140 3'UTR 0.27 TCGA-MN-A4N1-01 2 234113075 234113075 G A INPP5D Silent p.E1081E 0.17 TCGA-MN-A4N1-01 2 238977941 238977941 A T SCLY Missense_Mutation p.N111Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N1-01 2 241066156 241066156 C A MYEOV2 Nonsense_Mutation p.G195* 0.44 TCGA-MN-A4N1-01 2 29225484 29225484 G A FAM179A Silent p.R170R 0.10 TCGA-MN-A4N1-01 2 32341274 32341274 G T SPAST Missense_Mutation p.R364M 0.69 deleterious(0) probably_damaging(0.997) TCGA-MN-A4N1-01 2 61118822 61118822 G A REL Silent p.A5A 0.61 TCGA-MN-A4N1-01 2 61577705 61577705 G T USP34 Missense_Mutation p.Q459K 0.39 deleterious(0) possibly_damaging(0.761) TCGA-MN-A4N1-01 2 71780146 71780146 C A DYSF Nonsense_Mutation p.Y604* 0.57 TCGA-MN-A4N1-01 2 85890580 85890581 AG - SFTPB Frame_Shift_Del p.S309* 0.16 TCGA-MN-A4N1-01 2 88408039 88408039 C T SMYD1 Missense_Mutation p.P432L 0.51 deleterious(0.01) probably_damaging(0.945) TCGA-MN-A4N1-01 2 88825152 88825152 G T TEX37 Splice_Site 0.20 TCGA-MN-A4N1-01 2 88892863 88892863 C - EIF2AK3 Frame_Shift_Del p.E232Rfs*74 0.27 TCGA-MN-A4N1-01 2 89278140 89278140 G T IGKV3-7 Silent p.P65P 0.45 TCGA-MN-A4N1-01 2 90249316 90249316 C A IGKV1D-43 Missense_Mutation p.T91K 0.31 deleterious(0.02) benign(0.331) TCGA-MN-A4N1-01 3 10183846 10183846 G T VHL Silent p.T105T 0.25 TCGA-MN-A4N1-01 3 111886149 111886149 G T SLC9C1 Missense_Mutation p.P1095T 0.21 tolerated(0.5) benign(0.004) TCGA-MN-A4N1-01 3 113323790 113323790 G A SIDT1 Silent p.L457L 0.11 TCGA-MN-A4N1-01 3 113634612 113634612 T A GRAMD1C Silent p.A339A 0.11 TCGA-MN-A4N1-01 3 118913203 118913203 G T UPK1B Silent p.L202L 0.24 TCGA-MN-A4N1-01 3 122180126 122180126 C A KPNA1 Missense_Mutation p.G126V 0.10 deleterious(0) probably_damaging(0.939) TCGA-MN-A4N1-01 3 123512525 123512525 C A MYLK Missense_Mutation p.R55L 0.17 deleterious(0) benign(0.429) TCGA-MN-A4N1-01 3 128181585 128181585 G A DNAJB8 Silent p.S168S 0.36 TCGA-MN-A4N1-01 3 130422696 130422696 T A PIK3R4 Missense_Mutation p.H990L 0.32 deleterious(0) probably_damaging(0.978) TCGA-MN-A4N1-01 3 133329850 133329850 C T TOPBP1 Missense_Mutation p.E1391K 0.15 deleterious(0.03) benign(0.115) TCGA-MN-A4N1-01 3 13679312 13679312 G T FBLN2 Nonsense_Mutation p.E1197* 0.24 TCGA-MN-A4N1-01 3 140281653 140281653 G T CLSTN2 Missense_Mutation p.G738V 0.21 deleterious(0) probably_damaging(0.996) TCGA-MN-A4N1-01 3 148459962 148459962 C A AGTR1 3'UTR 0.23 TCGA-MN-A4N1-01 3 151056584 151056584 C T P2RY12 Missense_Mutation p.C17Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N1-01 3 164748595 164748595 G T SI Missense_Mutation p.Q933K 0.31 tolerated(0.94) benign(0.032) TCGA-MN-A4N1-01 3 179287650 179287650 A G ACTL6A Missense_Mutation p.T22A 0.14 deleterious(0.03) benign(0.006) TCGA-MN-A4N1-01 3 179605563 179605563 C T PEX5L Missense_Mutation p.E70K 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-MN-A4N1-01 3 183906918 183906918 G T ABCF3 Silent p.R340R 0.40 TCGA-MN-A4N1-01 3 186969470 186969470 G C MASP1 Missense_Mutation p.F321L 0.22 tolerated(0.4) probably_damaging(0.945) TCGA-MN-A4N1-01 3 194063289 194063289 G T CPN2 Missense_Mutation p.P48Q 0.28 deleterious(0) probably_damaging(1) TCGA-MN-A4N1-01 3 3111820 3111820 A T IL5RA 3'UTR 0.19 TCGA-MN-A4N1-01 3 38770228 38770228 G A SCN10A Silent p.N815N 0.15 TCGA-MN-A4N1-01 3 38770230 38770230 T A SCN10A Missense_Mutation p.N815Y 0.16 deleterious(0.02) benign(0.217) TCGA-MN-A4N1-01 3 41977433 41977433 C T ULK4 Splice_Site p.X80_splice 0.15 TCGA-MN-A4N1-01 3 432415 432415 G A CHL1 Silent p.V834V 0.17 TCGA-MN-A4N1-01 3 46414395 46414395 T C CCR5 Translation_Start_Site p.M1? 0.25 deleterious(0) benign(0.118) TCGA-MN-A4N1-01 3 48617740 48617740 C A COL7A1 Missense_Mutation p.G1697V 0.24 unknown(0) TCGA-MN-A4N1-01 3 48617741 48617741 C A COL7A1 Missense_Mutation p.G1697W 0.24 unknown(0) TCGA-MN-A4N1-01 3 50222217 50222217 G C SEMA3F Missense_Mutation p.G476R 0.33 deleterious(0) probably_damaging(1) TCGA-MN-A4N1-01 3 51308406 51308406 G T DOCK3 Missense_Mutation p.R839M 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-MN-A4N1-01 3 53820925 53820925 A G CACNA1D Silent p.K1643K 0.13 TCGA-MN-A4N1-01 3 57138387 57138387 C A IL17RD Missense_Mutation p.G266W 0.23 deleterious(0) probably_damaging(0.994) TCGA-MN-A4N1-01 3 88188386 88188386 C T ZNF654 5'UTR 0.33 TCGA-MN-A4N1-01 3 89390210 89390210 T C EPHA3 Missense_Mutation p.M320T 0.13 tolerated(0.44) benign(0.084) TCGA-MN-A4N1-01 3 9121754 9121754 C A SRGAP3 Silent p.L147L 0.28 TCGA-MN-A4N1-01 3 93699181 93699181 T A ARL13B 5'UTR 0.30 TCGA-MN-A4N1-01 3 97311456 97311456 G T EPHA6 Missense_Mutation p.R796I 0.30 tolerated(0.38) benign(0.08) TCGA-MN-A4N1-01 3 97311457 97311457 A T EPHA6 Missense_Mutation p.R796S 0.30 tolerated(0.61) benign(0.039) TCGA-MN-A4N1-01 3 97888271 97888271 C A OR5H15 Missense_Mutation p.A243D 0.30 deleterious(0.01) possibly_damaging(0.892) TCGA-MN-A4N1-01 4 114275990 114275990 C G ANK2 Silent p.S2072S 0.15 TCGA-MN-A4N1-01 4 114288739 114288739 G C ANK2 Missense_Mutation p.E3684Q 0.11 possibly_damaging(0.877) TCGA-MN-A4N1-01 4 114290746 114290746 G T ANK2 Nonsense_Mutation p.E3799* 0.42 TCGA-MN-A4N1-01 4 119059388 119059388 C A NDST3 Missense_Mutation p.N468K 0.42 deleterious(0.01) probably_damaging(0.946) TCGA-MN-A4N1-01 4 128814463 128814463 G T PLK4 Missense_Mutation p.D738Y 0.46 deleterious(0.01) possibly_damaging(0.642) TCGA-MN-A4N1-01 4 152095961 152095961 C A SH3D19 Silent p.G185G 0.13 TCGA-MN-A4N1-01 4 154519882 154519882 G A KIAA0922 Missense_Mutation p.R755K 0.09 tolerated(0.1) possibly_damaging(0.702) TCGA-MN-A4N1-01 4 155161792 155161792 A T DCHS2 Missense_Mutation p.L1964H 0.28 tolerated(0.6) benign(0.086) TCGA-MN-A4N1-01 4 156135124 156135124 C G NPY2R Missense_Mutation p.N11K 0.15 deleterious_low_confidence(0.05) possibly_damaging(0.578) TCGA-MN-A4N1-01 4 164393193 164393193 T A TKTL2 Missense_Mutation p.D565V 0.10 deleterious(0) probably_damaging(0.994) TCGA-MN-A4N1-01 4 177648974 177648974 C A VEGFC Silent p.G170G 0.12 TCGA-MN-A4N1-01 4 187541633 187541633 C T FAT1 Missense_Mutation p.G2036D 0.48 probably_damaging(1) TCGA-MN-A4N1-01 4 46976327 46976327 G T GABRA4 Missense_Mutation p.P215T 0.06 deleterious(0) probably_damaging(1) TCGA-MN-A4N1-01 4 57180261 57180261 G C KIAA1211 Missense_Mutation p.G198A 0.19 deleterious(0.01) probably_damaging(0.994) TCGA-MN-A4N1-01 4 6325220 6325220 G T PPP2R2C Silent p.R385R 0.29 TCGA-MN-A4N1-01 4 68797774 68797774 T C TMPRSS11A Missense_Mutation p.D89G 0.48 deleterious(0) possibly_damaging(0.487) TCGA-MN-A4N1-01 4 69188509 69188509 C A YTHDC1 Missense_Mutation p.R520L 0.44 deleterious(0.01) possibly_damaging(0.833) TCGA-MN-A4N1-01 4 71227848 71227848 T C SMR3A Missense_Mutation p.W6R 0.34 deleterious_low_confidence(0.02) unknown(0) TCGA-MN-A4N1-01 4 74852905 74852905 G T PPBP 3'UTR 0.42 TCGA-MN-A4N1-01 4 8394170 8394170 C A ACOX3 Missense_Mutation p.G397V 0.27 deleterious(0) possibly_damaging(0.702) TCGA-MN-A4N1-01 4 89912116 89912116 T C FAM13A Intron 0.09 TCGA-MN-A4N1-01 5 10973685 10973685 G C CTNND2 Silent p.T1186T 0.15 TCGA-MN-A4N1-01 5 112177975 112177975 G A APC Silent p.R2228R 0.48 TCGA-MN-A4N1-01 5 11397316 11397316 C A CTNND2 Splice_Site p.X147_splice 0.20 TCGA-MN-A4N1-01 5 11565071 11565071 C A CTNND2 Missense_Mutation p.S91I 0.10 deleterious(0) benign(0.003) TCGA-MN-A4N1-01 5 121409844 121409844 T G LOX Missense_Mutation p.E300A 0.32 tolerated(0.47) benign(0.148) TCGA-MN-A4N1-01 5 135692770 135692770 G C TRPC7 Missense_Mutation p.N102K 0.58 tolerated(0.13) benign(0.023) TCGA-MN-A4N1-01 5 138282972 138282972 G A SIL1 Missense_Mutation p.T407I 0.58 tolerated(0.39) benign(0.211) TCGA-MN-A4N1-01 5 140167512 140167512 G C PCDHA1 Missense_Mutation p.G546A 0.51 deleterious_low_confidence(0.04) benign(0.209) TCGA-MN-A4N1-01 5 140559208 140559208 G T PCDHB8 Silent p.R531R 0.24 TCGA-MN-A4N1-01 5 140604796 140604796 C T PCDHB14 Silent p.T573T 0.60 TCGA-MN-A4N1-01 5 140719108 140719108 G T PCDHGA2 Missense_Mutation p.K190N 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.708) TCGA-MN-A4N1-01 5 140774610 140774610 G T PCDHGA8 Nonsense_Mutation p.E744* 0.25 TCGA-MN-A4N1-01 5 140792938 140792938 C A PCDHGA10 Missense_Mutation p.R66S 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.706) TCGA-MN-A4N1-01 5 148997777 148997777 G T ARHGEF37 Nonsense_Mutation p.E233* 0.35 TCGA-MN-A4N1-01 5 149313562 149313562 A T PDE6A Missense_Mutation p.N216K 0.69 tolerated(0.19) possibly_damaging(0.562) TCGA-MN-A4N1-01 5 160049536 160049536 C A ATP10B Silent p.L559L 0.43 TCGA-MN-A4N1-01 5 167379751 167379751 G T TENM2 Missense_Mutation p.D291Y 0.21 deleterious(0) probably_damaging(0.995) TCGA-MN-A4N1-01 5 169805729 169805729 G T KCNMB1 Silent p.S185S 0.47 TCGA-MN-A4N1-01 5 173316776 173316776 A C CPEB4 Missense_Mutation p.T14P 0.11 deleterious_low_confidence(0.01) benign(0.424) TCGA-MN-A4N1-01 5 21975359 21975359 G T CDH12 Missense_Mutation p.P123T 0.18 tolerated(0.29) possibly_damaging(0.653) TCGA-MN-A4N1-01 5 23509058 23509058 G A PRDM9 Splice_Site 0.13 TCGA-MN-A4N1-01 5 33457507 33457507 G A TARS Missense_Mutation p.R361K 0.16 tolerated(1) benign(0.002) TCGA-MN-A4N1-01 5 34915014 34915014 G A RAD1 5'UTR 0.63 TCGA-MN-A4N1-01 5 34954833 34954833 G T DNAJC21 3'UTR 0.21 TCGA-MN-A4N1-01 5 35084693 35084693 G T PRLR Missense_Mutation p.N84K 0.64 deleterious(0) probably_damaging(0.927) TCGA-MN-A4N1-01 5 35771843 35771843 G C SPEF2 Missense_Mutation p.D1312H 0.17 deleterious(0.03) possibly_damaging(0.832) TCGA-MN-A4N1-01 5 35910466 35910466 A T CAPSL Splice_Site p.X105_splice 0.19 TCGA-MN-A4N1-01 5 39202820 39202820 C T FYB Silent p.P91P 0.06 TCGA-MN-A4N1-01 5 40681212 40681212 C T PTGER4 Silent p.I39I 0.19 TCGA-MN-A4N1-01 5 41196022 41196022 G T C6 Silent p.A153A 0.25 TCGA-MN-A4N1-01 5 43446580 43446580 G C C5orf28 Missense_Mutation p.T131S 0.11 tolerated(0.41) benign(0.038) TCGA-MN-A4N1-01 5 65084184 65084184 T A NLN Missense_Mutation p.L400M 0.57 deleterious(0) probably_damaging(0.913) TCGA-MN-A4N1-01 5 68425393 68425393 A C SLC30A5 Silent p.T749T 0.53 TCGA-MN-A4N1-01 5 7706920 7706920 C A ADCY2 Silent p.V391V 0.18 TCGA-MN-A4N1-01 5 78181548 78181548 C A ARSB Missense_Mutation p.S334I 0.25 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N1-01 5 79026035 79026035 G A CMYA5 Missense_Mutation p.E483K 0.52 benign(0.003) TCGA-MN-A4N1-01 5 82948642 82948642 T G HAPLN1 Silent p.A34A 0.55 TCGA-MN-A4N1-01 5 85592221 85592221 C A NBPF22P RNA 0.29 TCGA-MN-A4N1-01 5 90149128 90149128 A G GPR98 Silent p.P5744P 0.60 TCGA-MN-A4N1-01 5 9063162 9063162 C A SEMA5A Silent p.G785G 0.20 TCGA-MN-A4N1-01 6 100838747 100838747 C A SIM1 Silent p.G597G 0.06 TCGA-MN-A4N1-01 6 107780523 107780523 T A PDSS2 5'UTR 0.53 TCGA-MN-A4N1-01 6 110110875 110110875 A T FIG4 Silent p.V725V 0.08 TCGA-MN-A4N1-01 6 121768175 121768175 G C GJA1 Missense_Mutation p.C61S 0.50 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N1-01 6 133013645 133013645 G A VNN1 Missense_Mutation p.S302L 0.14 deleterious(0) benign(0.124) TCGA-MN-A4N1-01 6 13364977 13364977 A C GFOD1 Nonstop_Mutation p.*391Eext*9 0.25 TCGA-MN-A4N1-01 6 150343314 150343314 C T RAET1L Missense_Mutation p.A51T 0.12 tolerated(0.25) benign(0.012) TCGA-MN-A4N1-01 6 154567940 154567940 G T IPCEF1 Intron 0.39 TCGA-MN-A4N1-01 6 155775988 155775988 G T NOX3 Missense_Mutation p.P71H 0.20 deleterious(0) probably_damaging(1) TCGA-MN-A4N1-01 6 160468875 160468875 C A IGF2R Missense_Mutation p.P761T 0.25 deleterious(0) probably_damaging(1) TCGA-MN-A4N1-01 6 166571795 166571795 T A T 3'UTR 0.14 TCGA-MN-A4N1-01 6 167549852 167549852 C T CCR6 Missense_Mutation p.S45F 0.33 deleterious(0.01) possibly_damaging(0.497) TCGA-MN-A4N1-01 6 25606432 25606432 C A LRRC16A Missense_Mutation p.Q1260K 0.24 deleterious_low_confidence(0) benign(0.056) TCGA-MN-A4N1-01 6 26598917 26598917 C T ABT1 3'UTR 0.15 TCGA-MN-A4N1-01 6 27440132 27440132 C A ZNF184 5'UTR 0.38 TCGA-MN-A4N1-01 6 27792258 27792258 A G HIST1H4J 3'Flank 0.18 TCGA-MN-A4N1-01 6 28327678 28327678 G T ZKSCAN3 Missense_Mutation p.W105C 0.09 deleterious(0) probably_damaging(0.981) TCGA-MN-A4N1-01 6 28547182 28547182 T A SCAND3 Silent p.T145T 0.20 TCGA-MN-A4N1-01 6 29231693 29231693 G T XXbac-BPG308J9.3 RNA 0.22 TCGA-MN-A4N1-01 6 29231724 29231724 G A XXbac-BPG308J9.3 RNA 0.21 TCGA-MN-A4N1-01 6 30951775 30951775 C A MUC21 Missense_Mutation p.L14I 0.14 tolerated_low_confidence(0.22) unknown(0) TCGA-MN-A4N1-01 6 32036219 32036219 G A TNXB Silent p.Y2056Y 0.09 TCGA-MN-A4N1-01 6 35837334 35837334 G A SRPK1 Nonsense_Mutation p.Q446* 0.10 TCGA-MN-A4N1-01 6 54254598 54254598 A C TINAG Missense_Mutation p.N436H 0.13 deleterious(0) probably_damaging(1) TCGA-MN-A4N1-01 6 55935574 55935574 A C COL21A1 Missense_Mutation p.I663S 0.31 tolerated(0.62) benign(0.003) TCGA-MN-A4N1-01 6 6654820 6654820 C G LY86 Missense_Mutation p.S150C 0.20 tolerated(0.17) possibly_damaging(0.839) TCGA-MN-A4N1-01 6 70610163 70610163 C G COL19A1 Missense_Mutation p.R67G 0.25 tolerated(0.07) unknown(0) TCGA-MN-A4N1-01 6 73919742 73919742 G T RP11-257K9.8 3'UTR 0.40 TCGA-MN-A4N1-01 6 83075079 83075079 G A TPBG Missense_Mutation p.R134H 0.16 tolerated(0.15) benign(0.002) TCGA-MN-A4N1-01 7 100490117 100490117 C A ACHE Missense_Mutation p.R464L 0.05 deleterious(0) probably_damaging(1) TCGA-MN-A4N1-01 7 100552303 100552303 C A MUC3A Missense_Mutation p.P352T 0.11 deleterious(0.03) benign(0.242) TCGA-MN-A4N1-01 7 103179771 103179771 G T RELN Missense_Mutation p.L2312I 0.12 tolerated(0.19) probably_damaging(0.992) TCGA-MN-A4N1-01 7 103194274 103194274 C G RELN Missense_Mutation p.K1934N 0.05 tolerated(0.08) probably_damaging(0.98) TCGA-MN-A4N1-01 7 107602082 107602082 G A LAMB1 Nonsense_Mutation p.R633* 0.15 TCGA-MN-A4N1-01 7 107605038 107605038 C A LAMB1 Missense_Mutation p.D553Y 0.14 deleterious(0) probably_damaging(0.971) TCGA-MN-A4N1-01 7 107605039 107605039 C A LAMB1 Silent p.L552L 0.15 TCGA-MN-A4N1-01 7 107696319 107696319 A T LAMB4 Silent p.T1171T 0.06 TCGA-MN-A4N1-01 7 112462055 112462055 A G C7orf60 Missense_Mutation p.I321T 0.16 tolerated(0.46) benign(0.001) TCGA-MN-A4N1-01 7 117230459 117230459 C G CFTR Missense_Mutation p.L578V 0.16 tolerated(0.49) benign(0.015) TCGA-MN-A4N1-01 7 132192404 132192405 - G PLXNA4 Frame_Shift_Ins p.L350Pfs*3 0.08 TCGA-MN-A4N1-01 7 134552482 134552482 A C CALD1 5'UTR 0.19 TCGA-MN-A4N1-01 7 138968044 138968044 G C UBN2 Missense_Mutation p.R798P 0.05 deleterious_low_confidence(0.02) probably_damaging(0.993) TCGA-MN-A4N1-01 7 140481417 140481417 C A BRAF Missense_Mutation p.G464V 0.73 deleterious(0) probably_damaging(0.986) TCGA-MN-A4N1-01 7 140482946 140482946 C T BRAF Missense_Mutation p.G397S 0.08 tolerated(0.35) benign(0.23) TCGA-MN-A4N1-01 7 141766520 141766520 G C MGAM Intron 0.48 TCGA-MN-A4N1-01 7 142724158 142724158 C T OR9A2 Missense_Mutation p.G21E 0.13 tolerated(1) benign(0) TCGA-MN-A4N1-01 7 143748173 143748173 A T OR2A5 Missense_Mutation p.R227W 0.55 deleterious(0) probably_damaging(0.963) TCGA-MN-A4N1-01 7 144150626 144150626 C A TPK1 3'UTR 0.55 TCGA-MN-A4N1-01 7 150439455 150439455 G T GIMAP5 Missense_Mutation p.R76S 0.44 deleterious(0) probably_damaging(0.984) TCGA-MN-A4N1-01 7 151135213 151135213 C A CRYGN Nonsense_Mutation p.G47* 0.36 TCGA-MN-A4N1-01 7 1513208 1513208 G A INTS1 Missense_Mutation p.P1984L 0.30 tolerated(0.33) benign(0.017) TCGA-MN-A4N1-01 7 157926482 157926482 C A PTPRN2 Silent p.S481S 0.18 TCGA-MN-A4N1-01 7 18868823 18868823 G C HDAC9 Missense_Mutation p.E788Q 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-MN-A4N1-01 7 19761655 19761655 C T TMEM196 3'UTR 0.40 TCGA-MN-A4N1-01 7 27147915 27147915 G T HOXA3 Silent p.P317P 0.47 TCGA-MN-A4N1-01 7 27222391 27222391 C A HOXA11 3'UTR 0.44 TCGA-MN-A4N1-01 7 2962384 2962384 C A CARD11 Missense_Mutation p.C718F 0.27 tolerated(0.18) benign(0.117) TCGA-MN-A4N1-01 7 31683125 31683125 C G CCDC129 Missense_Mutation p.S740C 0.10 tolerated(0.1) benign(0.275) TCGA-MN-A4N1-01 7 36895022 36895022 G T ELMO1 3'UTR 0.43 TCGA-MN-A4N1-01 7 4008964 4008964 C T SDK1 Missense_Mutation p.A541V 0.19 deleterious(0.02) benign(0.009) TCGA-MN-A4N1-01 7 44097821 44097821 G T DBNL Nonsense_Mutation p.E216* 0.43 TCGA-MN-A4N1-01 7 44573448 44573448 A T NPC1L1 Missense_Mutation p.L724Q 0.47 tolerated(0.46) possibly_damaging(0.808) TCGA-MN-A4N1-01 7 45956236 45956236 G T IGFBP3 Missense_Mutation p.L227M 0.22 tolerated(0.07) possibly_damaging(0.517) TCGA-MN-A4N1-01 7 50097609 50097609 G C ZPBP Missense_Mutation p.L155V 0.19 tolerated(0.11) benign(0.023) TCGA-MN-A4N1-01 7 71252855 71252855 C T CALN1 Missense_Mutation p.V231I 0.14 deleterious(0) probably_damaging(0.981) TCGA-MN-A4N1-01 7 81964568 81964568 C A CACNA2D1 Splice_Site p.X60_splice 0.24 TCGA-MN-A4N1-01 7 83590802 83590802 C A SEMA3A Missense_Mutation p.R734L 0.47 deleterious(0.04) probably_damaging(0.998) TCGA-MN-A4N1-01 7 99489691 99489691 C A TRIM4 3'UTR 0.19 TCGA-MN-A4N1-01 7 99489692 99489692 C A TRIM4 3'UTR 0.17 TCGA-MN-A4N1-01 8 105235931 105235931 C A RIMS2 Intron 0.28 TCGA-MN-A4N1-01 8 10555405 10555405 G T C8orf74 Missense_Mutation p.A180S 0.51 tolerated(0.07) benign(0.028) TCGA-MN-A4N1-01 8 106800951 106800951 C A ZFPM2 Missense_Mutation p.Q180K 0.33 deleterious(0.02) possibly_damaging(0.82) TCGA-MN-A4N1-01 8 144464692 144464692 G T RHPN1 Missense_Mutation p.W628C 0.61 deleterious(0.01) possibly_damaging(0.632) TCGA-MN-A4N1-01 8 145697972 145697972 G T KIFC2 Missense_Mutation p.G582W 0.17 deleterious(0) probably_damaging(1) TCGA-MN-A4N1-01 8 21552004 21552004 G T GFRA2 Missense_Mutation p.S415Y 0.31 deleterious(0) possibly_damaging(0.901) TCGA-MN-A4N1-01 8 24256489 24256489 A C ADAMDEC1 Missense_Mutation p.N289H 0.13 deleterious(0.02) benign(0.126) TCGA-MN-A4N1-01 8 2818669 2818669 G C CSMD1 Silent p.G3232G 0.18 TCGA-MN-A4N1-01 8 37690525 37690525 C G GPR124 Intron 0.48 TCGA-MN-A4N1-01 8 37756983 37756983 G T RAB11FIP1 5'Flank 0.21 TCGA-MN-A4N1-01 8 42841873 42841873 A T HOOK3 Silent p.I489I 0.19 TCGA-MN-A4N1-01 8 4851865 4851865 G A CSMD1 Missense_Mutation p.T25I 0.13 benign(0.039) TCGA-MN-A4N1-01 8 48794511 48794511 T C PRKDC Missense_Mutation p.K1641E 0.17 possibly_damaging(0.823) TCGA-MN-A4N1-01 8 52321471 52321471 G T PXDNL Silent p.R905R 0.35 TCGA-MN-A4N1-01 8 52733039 52733039 C A PCMTD1 Nonsense_Mutation p.E316* 0.19 TCGA-MN-A4N1-01 8 53586700 53586700 C A RB1CC1 Missense_Mutation p.R236I 0.49 deleterious(0.02) benign(0.031) TCGA-MN-A4N1-01 8 59058719 59058719 G T FAM110B 5'UTR 0.35 TCGA-MN-A4N1-01 8 69136813 69136813 C A PREX2 Missense_Mutation p.T1576K 0.38 tolerated(0.11) benign(0.115) TCGA-MN-A4N1-01 8 7308365 7308365 C G SPAG11B Missense_Mutation p.R91T 0.09 deleterious(0.01) probably_damaging(0.995) TCGA-MN-A4N1-01 8 7308423 7308423 C T SPAG11B Splice_Site p.X72_splice 0.11 TCGA-MN-A4N1-01 8 73480146 73480146 G A KCNB2 Silent p.T59T 0.06 TCGA-MN-A4N1-01 8 77618118 77618118 G T ZFHX4 Missense_Mutation p.G599C 0.46 probably_damaging(0.984) TCGA-MN-A4N1-01 8 77619897 77619897 C G ZFHX4 Missense_Mutation p.L903V 0.20 possibly_damaging(0.567) TCGA-MN-A4N1-01 8 77767876 77767876 C A ZFHX4 Missense_Mutation p.P2907T 0.19 probably_damaging(0.996) TCGA-MN-A4N1-01 8 77767877 77767877 C A ZFHX4 Missense_Mutation p.P2907Q 0.17 probably_damaging(0.999) TCGA-MN-A4N1-01 8 89068390 89068390 C A MMP16 Missense_Mutation p.D447Y 0.16 deleterious(0.04) probably_damaging(0.975) TCGA-MN-A4N1-01 8 93017289 93017289 T A RUNX1T1 Intron 0.49 TCGA-MN-A4N1-01 8 99129313 99129313 C G HRSP12 Missense_Mutation p.L4F 0.11 deleterious(0.05) benign(0.006) TCGA-MN-A4N1-01 9 101980818 101980818 C G ALG2 Missense_Mutation p.D217H 0.06 tolerated(0.17) benign(0.049) TCGA-MN-A4N1-01 9 120476588 120476588 C A TLR4 Missense_Mutation p.H728N 0.47 deleterious(0.04) probably_damaging(0.976) TCGA-MN-A4N1-01 9 122004402 122004402 C A BRINP1 Missense_Mutation p.A168S 0.47 deleterious(0) probably_damaging(0.991) TCGA-MN-A4N1-01 9 125141152 125141152 C A PTGS1 Missense_Mutation p.L151M 0.11 deleterious(0) probably_damaging(0.991) TCGA-MN-A4N1-01 9 127566484 127566484 C A OLFML2A Missense_Mutation p.S344Y 0.59 tolerated(0.06) benign(0.004) TCGA-MN-A4N1-01 9 135173644 135173644 C T SETX Silent p.P1868P 0.21 TCGA-MN-A4N1-01 9 135458235 135458235 G A BARHL1 Silent p.A17A 0.44 TCGA-MN-A4N1-01 9 139277798 139277798 T A SNAPC4 Missense_Mutation p.Q608L 0.36 tolerated(0.09) benign(0.015) TCGA-MN-A4N1-01 9 140414421 140414421 G T PNPLA7 Silent p.G344G 0.08 TCGA-MN-A4N1-01 9 19446416 19446416 G C ACER2 Missense_Mutation p.W214S 0.63 tolerated(0.05) probably_damaging(1) TCGA-MN-A4N1-01 9 34249887 34249887 G A UBAP1 Silent p.T462T 0.60 TCGA-MN-A4N1-01 9 3937160 3937160 C A GLIS3 Missense_Mutation p.R580S 0.53 deleterious(0) probably_damaging(0.994) TCGA-MN-A4N1-01 9 40705437 40705437 G T SPATA31A3 Missense_Mutation p.V1032L 0.63 tolerated(0.16) benign(0.031) TCGA-MN-A4N1-01 9 72520897 72520897 A G C9orf135 Missense_Mutation p.I179V 0.53 tolerated(0.55) benign(0.208) TCGA-MN-A4N1-01 9 8319964 8319964 G T PTPRD Missense_Mutation p.A1846E 0.62 deleterious(0) probably_damaging(1) TCGA-MN-A4N1-01 9 92011694 92011694 G A SEMA4D Silent p.Y124Y 0.41 TCGA-MN-A4N1-01 9 96860191 96860191 G T PTPDC1 Missense_Mutation p.S446I 0.56 deleterious(0) probably_damaging(1) TCGA-MN-A4N1-01 9 97522375 97522375 A C C9orf3 Missense_Mutation p.K104Q 0.35 deleterious(0.01) possibly_damaging(0.709) TCGA-MN-A4N1-01 X 103045517 103045517 C T PLP1 Silent p.T275T 0.63 TCGA-MN-A4N1-01 X 104464010 104464010 G T TEX13A Nonsense_Mutation p.S289* 0.63 TCGA-MN-A4N1-01 X 125298902 125298902 G T DCAF12L2 Missense_Mutation p.Q336K 0.58 tolerated(0.09) benign(0.019) TCGA-MN-A4N1-01 X 127185519 127185519 C A ACTRT1 Missense_Mutation p.A223S 0.68 tolerated(0.1) probably_damaging(0.954) TCGA-MN-A4N1-01 X 153220946 153220946 C A HCFC1 Silent p.G968G 0.56 TCGA-MN-A4N1-01 X 20033362 20033362 C A MAP7D2 Missense_Mutation p.Q576H 0.53 deleterious(0) unknown(0) TCGA-MN-A4N1-01 X 3228257 3228257 C A MXRA5 Missense_Mutation p.G2663W 0.58 deleterious(0) probably_damaging(0.987) TCGA-MN-A4N1-01 X 36091356 36091356 T C CHDC2 Silent p.S97S 0.06 TCGA-MN-A4N1-01 X 48896791 48896791 C A TFE3 Silent p.A125A 0.73 TCGA-MN-A4N1-01 X 53621555 53621555 C T HUWE1 Missense_Mutation p.G1136D 0.14 probably_damaging(0.995) TCGA-MN-A4N1-01 X 69478592 69478592 C A P2RY4 Missense_Mutation p.A295S 0.75 deleterious(0) possibly_damaging(0.781) TCGA-MN-A4N1-01 X 69649412 69649412 C T GDPD2 Missense_Mutation p.P336S 0.57 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N1-01 X 78010523 78010523 G T LPAR4 Missense_Mutation p.G53C 0.68 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 10 100904084 100904084 A G HPSE2 Missense_Mutation p.L174P 0.28 tolerated(0.27) probably_damaging(0.987) TCGA-MN-A4N4-01 10 101606720 101606720 C A ABCC2 Missense_Mutation p.D1383E 0.17 tolerated(0.08) probably_damaging(1) TCGA-MN-A4N4-01 10 102003470 102003470 G A CWF19L1 Silent p.V343V 0.04 TCGA-MN-A4N4-01 10 102706859 102706859 G T FAM178A Missense_Mutation p.V1000L 0.22 deleterious(0) probably_damaging(0.959) TCGA-MN-A4N4-01 10 102896723 102896723 C A TLX1 3'UTR 0.32 TCGA-MN-A4N4-01 10 104122311 104122311 C A GBF1 Missense_Mutation p.T588N 0.16 deleterious(0) possibly_damaging(0.703) TCGA-MN-A4N4-01 10 105209648 105209648 C G CALHM2 Missense_Mutation p.K17N 0.08 deleterious(0) possibly_damaging(0.853) TCGA-MN-A4N4-01 10 106849540 106849540 G T SORCS3 Missense_Mutation p.A346S 0.20 tolerated(1) benign(0) TCGA-MN-A4N4-01 10 108439090 108439090 C G SORCS1 Missense_Mutation p.G555A 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-MN-A4N4-01 10 115385834 115385834 G C NRAP Missense_Mutation p.A739G 0.62 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 10 115805007 115805007 C T ADRB1 Silent p.F372F 0.18 TCGA-MN-A4N4-01 10 120353942 120353942 C A PRLHR Missense_Mutation p.R272L 0.20 deleterious(0) probably_damaging(0.983) TCGA-MN-A4N4-01 10 122280571 122280571 G A PPAPDC1A Missense_Mutation p.E137K 0.11 deleterious(0) probably_damaging(0.995) TCGA-MN-A4N4-01 10 122610918 122610918 G T WDR11 5'UTR 0.46 TCGA-MN-A4N4-01 10 123846414 123846414 C T TACC2 Missense_Mutation p.P1467S 0.07 benign(0.147) TCGA-MN-A4N4-01 10 124249001 124249001 T A HTRA1 Missense_Mutation p.D212E 0.13 deleterious(0.03) benign(0.199) TCGA-MN-A4N4-01 10 129875932 129875932 C T PTPRE Missense_Mutation p.H593Y 0.12 deleterious(0.03) probably_damaging(0.998) TCGA-MN-A4N4-01 10 132944916 132944916 C A TCERG1L Missense_Mutation p.V348F 0.14 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 10 134660743 134660743 G T TTC40 Missense_Mutation p.P2012Q 0.20 tolerated(0.23) benign(0.124) TCGA-MN-A4N4-01 10 135126285 135126285 A G ZNF511 Intron 0.17 TCGA-MN-A4N4-01 10 135233685 135233685 G A MTG1 3'UTR 0.24 TCGA-MN-A4N4-01 10 15120433 15120433 G A ACBD7 3'UTR 0.14 TCGA-MN-A4N4-01 10 16873389 16873389 G C CUBN Missense_Mutation p.P3464A 0.27 deleterious(0.04) probably_damaging(0.998) TCGA-MN-A4N4-01 10 21804607 21804607 C A SKIDA1 Missense_Mutation p.K715N 0.18 tolerated(0.09) unknown(0) TCGA-MN-A4N4-01 10 25887240 25887240 A T GPR158 Silent p.R895R 0.18 TCGA-MN-A4N4-01 10 26581444 26581444 G T GAD2 Missense_Mutation p.E479D 0.30 tolerated(0.09) probably_damaging(0.922) TCGA-MN-A4N4-01 10 29769596 29769596 G A SVIL Silent p.I1749I 0.06 TCGA-MN-A4N4-01 10 31810091 31810091 G A ZEB1 Missense_Mutation p.E611K 0.11 deleterious(0) probably_damaging(0.992) TCGA-MN-A4N4-01 10 35500307 35500307 A T CREM Intron 0.10 TCGA-MN-A4N4-01 10 38404184 38404184 A T ZNF37A Silent p.I68I 0.26 TCGA-MN-A4N4-01 10 44140022 44140022 T A ZNF32 Missense_Mutation p.T100S 0.19 deleterious(0.04) possibly_damaging(0.594) TCGA-MN-A4N4-01 10 44874046 44874046 T A CXCL12 Intron 0.18 TCGA-MN-A4N4-01 10 46222876 46222876 G T FAM21C Silent p.T5T 0.18 TCGA-MN-A4N4-01 10 48382046 48382046 C A RBP3 Silent p.S1201S 0.22 TCGA-MN-A4N4-01 10 48388043 48388043 C T RBP3 Silent p.G945G 0.11 TCGA-MN-A4N4-01 10 50686483 50686483 G A ERCC6 Nonsense_Mutation p.R735* 0.28 TCGA-MN-A4N4-01 10 50732182 50732182 C - ERCC6-PGBD3 Frame_Shift_Del p.E432Kfs*8 0.08 TCGA-MN-A4N4-01 10 55570374 55570374 C A PCDH15 Missense_Mutation p.G1482V 0.11 benign(0.3) TCGA-MN-A4N4-01 10 55663010 55663010 C T PCDH15 Missense_Mutation p.R1165K 0.12 tolerated(0.91) benign(0.004) TCGA-MN-A4N4-01 10 56077074 56077074 C A PCDH15 Missense_Mutation p.R278L 0.08 tolerated(0.72) possibly_damaging(0.647) TCGA-MN-A4N4-01 10 56287590 56287590 C T PCDH15 Missense_Mutation p.D47N 0.11 deleterious_low_confidence(0) possibly_damaging(0.858) TCGA-MN-A4N4-01 10 5808094 5808094 C A GDI2 Missense_Mutation p.D405Y 0.06 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 10 64415371 64415371 A G ZNF365 Intron 0.24 TCGA-MN-A4N4-01 10 6525494 6525494 C G PRKCQ Missense_Mutation p.E363Q 0.05 tolerated(0.55) benign(0.002) TCGA-MN-A4N4-01 10 68687430 68687430 G A LRRTM3 Nonsense_Mutation p.W252* 0.06 TCGA-MN-A4N4-01 10 68979560 68979560 G T CTNNA3 Silent p.P216P 0.11 TCGA-MN-A4N4-01 10 69793923 69793923 C A HERC4 Nonsense_Mutation p.G162* 0.15 TCGA-MN-A4N4-01 10 69921506 69921506 C A MYPN Missense_Mutation p.P494T 0.22 deleterious(0.01) probably_damaging(0.934) TCGA-MN-A4N4-01 10 70043977 70043977 C T PBLD Missense_Mutation p.R275K 0.36 tolerated(0.74) benign(0.002) TCGA-MN-A4N4-01 10 7290522 7290522 C A SFMBT2 Silent p.A320A 0.25 TCGA-MN-A4N4-01 10 73122269 73122269 G T SLC29A3 Missense_Mutation p.E444D 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-MN-A4N4-01 10 73579246 73579246 G A PSAP Silent p.F442F 0.15 TCGA-MN-A4N4-01 10 74658755 74658755 G A OIT3 Missense_Mutation p.R132H 0.27 tolerated(0.09) benign(0.014) TCGA-MN-A4N4-01 10 74660145 74660145 C T OIT3 Silent p.D149D 0.12 TCGA-MN-A4N4-01 10 7771949 7771949 T A ITIH2 Silent p.V438V 0.41 TCGA-MN-A4N4-01 10 7805721 7805721 C A KIN Nonsense_Mutation p.G295* 0.17 TCGA-MN-A4N4-01 10 7805722 7805722 C A KIN Silent p.L294L 0.16 TCGA-MN-A4N4-01 10 7830106 7830106 T A ATP5C1 5'UTR 0.24 TCGA-MN-A4N4-01 10 78846342 78846342 G - KCNMA1 Frame_Shift_Del p.N449Tfs*33 0.08 TCGA-MN-A4N4-01 10 79628975 79628975 C A AL391421.1 3'UTR 0.21 TCGA-MN-A4N4-01 10 85984319 85984319 G T LRIT2 Missense_Mutation p.P221Q 0.28 deleterious(0.03) probably_damaging(0.948) TCGA-MN-A4N4-01 10 87362020 87362020 G T GRID1 3'UTR 0.30 TCGA-MN-A4N4-01 10 87407174 87407174 C A GRID1 Intron 0.26 TCGA-MN-A4N4-01 10 88425498 88425498 C A OPN4 Missense_Mutation p.P487H 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.518) TCGA-MN-A4N4-01 10 89501120 89501120 G A PAPSS2 Missense_Mutation p.M405I 0.08 tolerated(0.18) benign(0.234) TCGA-MN-A4N4-01 10 89624031 89624031 G T PTEN 5'UTR 0.33 TCGA-MN-A4N4-01 10 91497636 91497636 C G KIF20B Nonsense_Mutation p.S973* 0.14 TCGA-MN-A4N4-01 10 92680884 92680884 C A ANKRD1 5'UTR 0.17 TCGA-MN-A4N4-01 10 93778679 93778679 C T BTAF1 Missense_Mutation p.S1617L 0.05 tolerated(0.09) benign(0.003) TCGA-MN-A4N4-01 10 94602 94602 C T TUBB8 Missense_Mutation p.R77H 0.10 deleterious_low_confidence(0.03) benign(0.092) TCGA-MN-A4N4-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.35 TCGA-MN-A4N4-01 10 96466635 96466635 A T CYP2C18 Missense_Mutation p.E246V 0.15 deleterious(0) possibly_damaging(0.62) TCGA-MN-A4N4-01 10 96740945 96740945 G T CYP2C9 Missense_Mutation p.V323F 0.32 deleterious(0) possibly_damaging(0.816) TCGA-MN-A4N4-01 10 99967953 99967953 G T R3HCC1L Missense_Mutation p.A28S 0.23 tolerated(0.26) benign(0.046) TCGA-MN-A4N4-01 11 1015908 1015908 G C MUC6 Missense_Mutation p.S2298C 0.07 unknown(0) TCGA-MN-A4N4-01 11 102641488 102641488 T C MMP10 3'UTR 0.41 TCGA-MN-A4N4-01 11 102663432 102663432 C T MMP1 Missense_Mutation p.E313K 0.12 deleterious(0.02) probably_damaging(0.976) TCGA-MN-A4N4-01 11 102742605 102742605 T G MMP12 RNA 0.15 TCGA-MN-A4N4-01 11 103814309 103814309 C T PDGFD Missense_Mutation p.A215T 0.29 tolerated(0.18) possibly_damaging(0.698) TCGA-MN-A4N4-01 11 108115618 108115618 G C ATM Missense_Mutation p.D256H 0.05 deleterious(0) possibly_damaging(0.77) TCGA-MN-A4N4-01 11 108124589 108124589 A T ATM Missense_Mutation p.E649D 0.38 deleterious(0.01) probably_damaging(0.976) TCGA-MN-A4N4-01 11 108141819 108141819 G A ATM Missense_Mutation p.G956E 0.09 tolerated(0.39) benign(0.044) TCGA-MN-A4N4-01 11 108381885 108381885 C T EXPH5 Missense_Mutation p.S1450N 0.13 tolerated(0.2) benign(0.014) TCGA-MN-A4N4-01 11 113266928 113266928 G A ANKK1 Silent p.K274K 0.13 TCGA-MN-A4N4-01 11 113934449 113934449 G T ZBTB16 Nonsense_Mutation p.E143* 0.36 TCGA-MN-A4N4-01 11 114392897 114392897 G A NXPE1 Silent p.N337N 0.05 TCGA-MN-A4N4-01 11 114393722 114393722 A G NXPE1 Silent p.F187F 0.34 TCGA-MN-A4N4-01 11 114401564 114401564 G T NXPE1 5'UTR 0.22 TCGA-MN-A4N4-01 11 114401565 114401565 G T NXPE1 5'UTR 0.22 TCGA-MN-A4N4-01 11 116654245 116654245 C A ZNF259 Splice_Site p.X327_splice 0.27 TCGA-MN-A4N4-01 11 120198011 120198011 G C TMEM136 5'UTR 0.15 TCGA-MN-A4N4-01 11 120322433 120322433 G C ARHGEF12 Missense_Mutation p.G686R 0.15 tolerated(0.18) benign(0.288) TCGA-MN-A4N4-01 11 120989109 120989109 G C TECTA Missense_Mutation p.Q295H 0.08 tolerated(0.17) benign(0.035) TCGA-MN-A4N4-01 11 122775027 122775027 C T C11orf63 Missense_Mutation p.R247W 0.35 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 11 123777749 123777749 G T OR8D4 Missense_Mutation p.G204V 0.22 deleterious(0.04) probably_damaging(1) TCGA-MN-A4N4-01 11 123893778 123893778 G T OR10G9 Missense_Mutation p.G20V 0.18 tolerated(0.07) benign(0) TCGA-MN-A4N4-01 11 124180648 124180648 A C OR8D1 Missense_Mutation p.N5K 0.15 deleterious(0) possibly_damaging(0.743) TCGA-MN-A4N4-01 11 124189321 124189321 A G OR8D2 Missense_Mutation p.M258T 0.13 deleterious(0.03) probably_damaging(0.985) TCGA-MN-A4N4-01 11 124189392 124189392 T A OR8D2 Missense_Mutation p.Q234H 0.17 deleterious(0) benign(0.183) TCGA-MN-A4N4-01 11 124267015 124267015 G T OR8B3 Missense_Mutation p.T78N 0.11 deleterious_low_confidence(0) possibly_damaging(0.548) TCGA-MN-A4N4-01 11 124440205 124440205 A T OR8A1 Missense_Mutation p.S81C 0.04 deleterious(0.04) probably_damaging(0.954) TCGA-MN-A4N4-01 11 124481557 124481557 C A PANX3 Missense_Mutation p.D35E 0.27 deleterious(0) probably_damaging(0.996) TCGA-MN-A4N4-01 11 124765693 124765693 C - ROBO4 Frame_Shift_Del p.W265Cfs*59 0.11 TCGA-MN-A4N4-01 11 124765723 124765723 T A ROBO4 Silent p.A255A 0.22 TCGA-MN-A4N4-01 11 124792656 124792656 G T HEPACAM Missense_Mutation p.R288S 0.32 tolerated(0.75) benign(0.003) TCGA-MN-A4N4-01 11 125853846 125853846 C A CDON Silent p.V972V 0.37 TCGA-MN-A4N4-01 11 1276738 1276738 G T MUC5B Missense_Mutation p.R5339L 0.50 unknown(0) TCGA-MN-A4N4-01 11 128628042 128628042 C A FLI1 Silent p.S17S 0.29 TCGA-MN-A4N4-01 11 128709379 128709379 C T KCNJ1 Missense_Mutation p.D273N 0.11 tolerated(0.13) probably_damaging(0.997) TCGA-MN-A4N4-01 11 128709852 128709852 G A KCNJ1 Missense_Mutation p.S115F 0.07 deleterious(0.01) possibly_damaging(0.657) TCGA-MN-A4N4-01 11 129991662 129991662 G C APLP2 Missense_Mutation p.E224Q 0.05 tolerated(0.3) benign(0.066) TCGA-MN-A4N4-01 11 130773248 130773248 C A SNX19 Silent p.L825L 0.13 TCGA-MN-A4N4-01 11 130785619 130785619 C A SNX19 Silent p.V72V 0.16 TCGA-MN-A4N4-01 11 130785628 130785628 G T SNX19 Silent p.L69L 0.11 TCGA-MN-A4N4-01 11 134029825 134029825 C A NCAPD3 Missense_Mutation p.G1277W 0.22 deleterious(0.02) possibly_damaging(0.6) TCGA-MN-A4N4-01 11 16847834 16847834 C T PLEKHA7 Silent p.E392E 0.35 TCGA-MN-A4N4-01 11 16877392 16877392 C A PLEKHA7 Silent p.T125T 0.11 TCGA-MN-A4N4-01 11 17191091 17191091 C T PIK3C2A Silent p.Q66Q 0.10 TCGA-MN-A4N4-01 11 17553052 17553052 G T USH1C Missense_Mutation p.L48M 0.32 tolerated(0.08) possibly_damaging(0.651) TCGA-MN-A4N4-01 11 1858527 1858527 C T SYT8 Missense_Mutation p.H358Y 0.21 deleterious(0) probably_damaging(0.974) TCGA-MN-A4N4-01 11 22382442 22382442 G A SLC17A6 Splice_Site p.X192_splice 0.39 TCGA-MN-A4N4-01 11 22396322 22396322 C T SLC17A6 Missense_Mutation p.P355S 0.05 deleterious(0) probably_damaging(0.989) TCGA-MN-A4N4-01 11 25100231 25100231 C A LUZP2 3'UTR 0.39 TCGA-MN-A4N4-01 11 26695068 26695068 T C SLC5A12 Missense_Mutation p.R530G 0.11 deleterious(0.02) benign(0.013) TCGA-MN-A4N4-01 11 30900213 30900213 C A DCDC1 Missense_Mutation p.R1757L 0.42 deleterious(0.01) benign(0.433) TCGA-MN-A4N4-01 11 33049339 33049339 C T DEPDC7 Missense_Mutation p.S191F 0.28 deleterious(0.04) benign(0.008) TCGA-MN-A4N4-01 11 33596253 33596253 G T KIAA1549L Silent p.V1115V 0.11 TCGA-MN-A4N4-01 11 33604987 33604987 C T KIAA1549L Silent p.C1205C 0.40 TCGA-MN-A4N4-01 11 35828092 35828092 G T TRIM44 3'UTR 0.12 TCGA-MN-A4N4-01 11 40136269 40136269 G A LRRC4C Missense_Mutation p.T525I 0.15 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 11 44080198 44080198 C A ACCSL Missense_Mutation p.P525T 0.17 deleterious(0.02) possibly_damaging(0.811) TCGA-MN-A4N4-01 11 4471055 4471055 C T OR52K2 Silent p.P162P 0.25 TCGA-MN-A4N4-01 11 4608818 4608818 C A OR52I2 Missense_Mutation p.S259Y 0.07 deleterious(0) probably_damaging(0.987) TCGA-MN-A4N4-01 11 46744803 46744803 G T F2 Missense_Mutation p.Q130H 0.31 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 11 46774957 46774957 G A CKAP5 Missense_Mutation p.R1654W 0.18 deleterious(0) probably_damaging(0.987) TCGA-MN-A4N4-01 11 46774958 46774958 A G CKAP5 Silent p.S1653S 0.18 TCGA-MN-A4N4-01 11 46890545 46890545 G T LRP4 Missense_Mutation p.Q1611K 0.19 deleterious(0) probably_damaging(0.943) TCGA-MN-A4N4-01 11 4703575 4703575 C A OR51E2 Missense_Mutation p.V123L 0.10 deleterious(0.01) benign(0.016) TCGA-MN-A4N4-01 11 4903943 4903943 A G OR51T1 Missense_Mutation p.R299G 0.10 deleterious(0.04) benign(0.407) TCGA-MN-A4N4-01 11 49831332 49831332 A T RP11-707M1.1 RNA 0.17 TCGA-MN-A4N4-01 11 49974451 49974451 C T OR4C13 Silent p.L159L 0.27 TCGA-MN-A4N4-01 11 51412281 51412281 C T OR4A5 Missense_Mutation p.G39R 0.32 deleterious_low_confidence(0) possibly_damaging(0.5) TCGA-MN-A4N4-01 11 51515378 51515378 T A OR4C46 Missense_Mutation p.Y33N 0.23 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-MN-A4N4-01 11 5221796 5221796 G T OR51V1 Silent p.A45A 0.06 TCGA-MN-A4N4-01 11 5345028 5345028 C A OR51B2 Missense_Mutation p.C167F 0.06 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N4-01 11 55321919 55321919 G C OR4C15 Missense_Mutation p.G46A 0.08 tolerated_low_confidence(1) benign(0) TCGA-MN-A4N4-01 11 5536898 5536898 C A UBQLNL Silent p.L258L 0.27 TCGA-MN-A4N4-01 11 55418543 55418543 C A OR4S2 Nonsense_Mutation p.S55* 0.19 TCGA-MN-A4N4-01 11 55541188 55541188 G A OR5D13 Missense_Mutation p.R92K 0.20 tolerated(0.29) benign(0.37) TCGA-MN-A4N4-01 11 55563454 55563454 G T OR5D14 Missense_Mutation p.R141S 0.23 deleterious(0.04) benign(0.232) TCGA-MN-A4N4-01 11 55595340 55595340 A C OR5L2 Missense_Mutation p.T216P 0.17 deleterious(0.01) probably_damaging(0.938) TCGA-MN-A4N4-01 11 55681661 55681661 G A OR5W2 Missense_Mutation p.T133I 0.10 deleterious(0.01) benign(0.061) TCGA-MN-A4N4-01 11 55890633 55890633 C G OR8H3 Missense_Mutation p.P262R 0.25 deleterious(0) probably_damaging(0.966) TCGA-MN-A4N4-01 11 5602111 5602111 C A OR52B6 Missense_Mutation p.A2E 0.31 deleterious_low_confidence(0.02) benign(0.017) TCGA-MN-A4N4-01 11 56058385 56058385 C A OR8H1 Missense_Mutation p.D52Y 0.19 deleterious(0) probably_damaging(0.98) TCGA-MN-A4N4-01 11 56114282 56114282 G T OR8K1 Missense_Mutation p.M256I 0.24 tolerated_low_confidence(0.12) benign(0.003) TCGA-MN-A4N4-01 11 56127851 56127851 G T OR8J1 Silent p.L43L 0.24 TCGA-MN-A4N4-01 11 56143964 56143964 A T OR8U1 Missense_Mutation p.I289F 0.14 deleterious(0) possibly_damaging(0.796) TCGA-MN-A4N4-01 11 56230116 56230116 G A OR5M9 Silent p.I254I 0.22 TCGA-MN-A4N4-01 11 56237922 56237922 G T OR5M3 Missense_Mutation p.R18S 0.14 tolerated(0.2) benign(0.004) TCGA-MN-A4N4-01 11 56409040 56409040 A T OR5AP2 Missense_Mutation p.N292K 0.17 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 11 56409608 56409608 C A OR5AP2 Missense_Mutation p.C103F 0.30 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 11 57070189 57070189 G A TNKS1BP1 Missense_Mutation p.S1476L 0.33 tolerated(0.18) benign(0.017) TCGA-MN-A4N4-01 11 5758678 5758678 T A OR56B1 Missense_Mutation p.F311Y 0.08 deleterious(0) possibly_damaging(0.616) TCGA-MN-A4N4-01 11 5776477 5776477 C T OR52N4 Silent p.P169P 0.28 TCGA-MN-A4N4-01 11 57798758 57798758 G C OR6Q1 Missense_Mutation p.G112R 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-MN-A4N4-01 11 57799110 57799110 T C OR6Q1 Missense_Mutation p.L229P 0.23 deleterious(0) probably_damaging(0.93) TCGA-MN-A4N4-01 11 5799285 5799285 C T OR52N5 Missense_Mutation p.V194I 0.11 deleterious(0.05) possibly_damaging(0.566) TCGA-MN-A4N4-01 11 58190267 58190267 G A OR5B2 Silent p.F156F 0.06 TCGA-MN-A4N4-01 11 58207473 58207473 G T OR5B12 Missense_Mutation p.S51Y 0.19 deleterious_low_confidence(0.01) benign(0.16) TCGA-MN-A4N4-01 11 59245668 59245668 T C OR4D10 Missense_Mutation p.Y256H 0.14 deleterious(0) probably_damaging(0.992) TCGA-MN-A4N4-01 11 59630138 59630138 C T TCN1 Missense_Mutation p.R106H 0.12 tolerated(0.52) benign(0.001) TCGA-MN-A4N4-01 11 59942901 59942901 A T MS4A6A Missense_Mutation p.C203S 0.33 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N4-01 11 61067671 61067671 C A DDB1 Missense_Mutation p.M1120I 0.08 tolerated(0.45) benign(0.003) TCGA-MN-A4N4-01 11 61179384 61179384 C A CPSF7 Silent p.T413T 0.37 TCGA-MN-A4N4-01 11 61323636 61323636 G A SYT7 Silent p.T25T 0.14 TCGA-MN-A4N4-01 11 62302542 62302542 C A AHNAK Missense_Mutation p.R92L 0.36 possibly_damaging(0.619) TCGA-MN-A4N4-01 11 62375729 62375729 C T EML3 Missense_Mutation p.E384K 0.11 deleterious(0) possibly_damaging(0.867) TCGA-MN-A4N4-01 11 62744705 62744705 C A SLC22A6 Nonsense_Mutation p.E506* 0.27 TCGA-MN-A4N4-01 11 64514710 64514710 G T PYGM Silent p.L766L 0.24 TCGA-MN-A4N4-01 11 65271249 65271249 G T MALAT1 RNA 0.12 TCGA-MN-A4N4-01 11 65620876 65620876 C T SNX32 3'UTR 0.12 TCGA-MN-A4N4-01 11 65638662 65638662 T A EFEMP2 Silent p.P111P 0.12 TCGA-MN-A4N4-01 11 65688366 65688366 G T DRAP1 Missense_Mutation p.E145D 0.11 tolerated(0.28) unknown(0) TCGA-MN-A4N4-01 11 65734948 65734948 G T SART1 Silent p.R440R 0.30 TCGA-MN-A4N4-01 11 66055592 66055592 C T YIF1A Missense_Mutation p.S68N 0.31 deleterious(0.01) benign(0.084) TCGA-MN-A4N4-01 11 66472379 66472379 G A SPTBN2 Missense_Mutation p.R790W 0.28 deleterious(0) probably_damaging(0.94) TCGA-MN-A4N4-01 11 6661949 6661949 C A DCHS1 Missense_Mutation p.S299I 0.33 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 11 68154173 68154173 G T LRP5 Missense_Mutation p.V469L 0.24 tolerated(0.27) benign(0.002) TCGA-MN-A4N4-01 11 68193606 68193606 C T LRP5 Silent p.A1196A 0.18 TCGA-MN-A4N4-01 11 6912997 6912997 G A OR2D2 Silent p.L245L 0.25 TCGA-MN-A4N4-01 11 7021001 7021001 G A ZNF214 3'UTR 0.31 TCGA-MN-A4N4-01 11 71146664 71146664 C A DHCR7 Silent p.L395L 0.41 TCGA-MN-A4N4-01 11 71932569 71932569 C A FOLR2 Silent p.P177P 0.14 TCGA-MN-A4N4-01 11 73881872 73881872 C A C2CD3 5'UTR 0.38 TCGA-MN-A4N4-01 11 73988125 73988125 T A P4HA3 Missense_Mutation p.T414S 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-MN-A4N4-01 11 73988126 73988126 G A P4HA3 Silent p.L413L 0.09 TCGA-MN-A4N4-01 11 74546607 74546607 C T RNF169 Missense_Mutation p.P320L 0.08 tolerated(0.27) benign(0.261) TCGA-MN-A4N4-01 11 7981802 7981802 G A NLRP10 Nonsense_Mutation p.Q453* 0.06 TCGA-MN-A4N4-01 11 85435131 85435131 G A SYTL2 Missense_Mutation p.S790F 0.44 deleterious(0) possibly_damaging(0.834) TCGA-MN-A4N4-01 11 85956226 85956226 G T EED 5'UTR 0.48 TCGA-MN-A4N4-01 11 92715250 92715250 G T MTNR1B Missense_Mutation p.E287D 0.11 tolerated(0.07) benign(0.042) TCGA-MN-A4N4-01 11 93127795 93127795 A G CCDC67 Missense_Mutation p.I404M 0.11 deleterious(0.04) probably_damaging(0.967) TCGA-MN-A4N4-01 11 93796685 93796685 C G HEPHL1 Missense_Mutation p.P143A 0.39 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 11 94038896 94038896 C A FOLR4 Missense_Mutation p.H32N 0.26 deleterious(0.05) possibly_damaging(0.809) TCGA-MN-A4N4-01 12 100774638 100774638 C G SLC17A8 Missense_Mutation p.C87W 0.21 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 12 101740332 101740332 C T UTP20 Missense_Mutation p.A1617V 0.26 tolerated(0.28) possibly_damaging(0.562) TCGA-MN-A4N4-01 12 104373620 104373620 G - TDG Frame_Shift_Del p.G60Efs*45 0.20 TCGA-MN-A4N4-01 12 10601972 10601972 T A KLRC1 Missense_Mutation p.H118L 0.48 deleterious(0.01) possibly_damaging(0.54) TCGA-MN-A4N4-01 12 107048035 107048035 G T RFX4 Missense_Mutation p.G83V 0.17 deleterious(0) probably_damaging(0.986) TCGA-MN-A4N4-01 12 107114572 107114572 G T RFX4 Silent p.V432V 0.22 TCGA-MN-A4N4-01 12 108145600 108145600 C T PRDM4 Missense_Mutation p.V240M 0.14 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-MN-A4N4-01 12 108589605 108589605 C A WSCD2 5'UTR 0.19 TCGA-MN-A4N4-01 12 108600106 108600106 G A WSCD2 Silent p.R141R 0.20 TCGA-MN-A4N4-01 12 108685800 108685800 T A CMKLR1 Missense_Mutation p.I314F 0.18 tolerated(0.09) benign(0.159) TCGA-MN-A4N4-01 12 108685961 108685961 T C CMKLR1 Missense_Mutation p.K260R 0.21 tolerated(0.3) possibly_damaging(0.666) TCGA-MN-A4N4-01 12 109016956 109016956 G T SELPLG Silent p.P392P 0.22 TCGA-MN-A4N4-01 12 109889506 109889506 G T KCTD10 Missense_Mutation p.A279E 0.22 tolerated(0.15) possibly_damaging(0.656) TCGA-MN-A4N4-01 12 113706664 113706664 G A TPCN1 Missense_Mutation p.G288S 0.12 tolerated(0.09) probably_damaging(0.93) TCGA-MN-A4N4-01 12 114793417 114793417 C A TBX5 Missense_Mutation p.V493L 0.12 tolerated_low_confidence(0.22) benign(0.005) TCGA-MN-A4N4-01 12 120589172 120589172 G A GCN1L1 Silent p.C1362C 0.37 TCGA-MN-A4N4-01 12 120600725 120600725 C G GCN1L1 Missense_Mutation p.D697H 0.24 possibly_damaging(0.88) TCGA-MN-A4N4-01 12 120649934 120649934 T A PXN 3'UTR 0.14 TCGA-MN-A4N4-01 12 123214304 123214304 A T HCAR1 Missense_Mutation p.C195S 0.21 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 12 123950129 123950129 C G SNRNP35 Silent p.L19L 0.32 TCGA-MN-A4N4-01 12 123950942 123950942 G A SNRNP35 3'Flank 0.35 TCGA-MN-A4N4-01 12 124409700 124409700 A T DNAH10 Missense_Mutation p.D3839V 0.23 probably_damaging(0.999) TCGA-MN-A4N4-01 12 126135372 126135372 G T TMEM132B Missense_Mutation p.G591V 0.32 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N4-01 12 126138380 126138380 C G TMEM132B Silent p.V787V 0.19 TCGA-MN-A4N4-01 12 130827548 130827548 G T PIWIL1 Missense_Mutation p.G31V 0.31 tolerated(0.19) probably_damaging(0.988) TCGA-MN-A4N4-01 12 13243746 13243746 G T GSG1 Missense_Mutation p.L19I 0.17 deleterious(0.03) possibly_damaging(0.69) TCGA-MN-A4N4-01 12 133218935 133218935 G A POLE Silent p.F1667F 0.11 TCGA-MN-A4N4-01 12 13716971 13716971 G C GRIN2B Silent p.T1067T 0.09 TCGA-MN-A4N4-01 12 13717031 13717031 G A GRIN2B Silent p.D1047D 0.32 TCGA-MN-A4N4-01 12 13764766 13764766 A T GRIN2B Missense_Mutation p.V558E 0.10 deleterious(0) benign(0.197) TCGA-MN-A4N4-01 12 14619498 14619498 A T ATF7IP Nonsense_Mutation p.K946* 0.12 TCGA-MN-A4N4-01 12 14993577 14993577 C G ART4 Missense_Mutation p.E219Q 0.09 tolerated(0.42) benign(0.012) TCGA-MN-A4N4-01 12 15677803 15677803 C T PTPRO Silent p.I649I 0.06 TCGA-MN-A4N4-01 12 16035650 16035650 G T STRAP Missense_Mutation p.M3I 0.14 tolerated(0.14) benign(0.006) TCGA-MN-A4N4-01 12 1993990 1993990 C A CACNA2D4 Missense_Mutation p.G406C 0.31 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 12 21665283 21665283 C A GOLT1B Silent p.S117S 0.12 TCGA-MN-A4N4-01 12 22063861 22063861 C G ABCC9 Missense_Mutation p.A355P 0.39 deleterious(0.03) benign(0.036) TCGA-MN-A4N4-01 12 25149232 25149232 G T C12orf77 Silent p.V15V 0.45 TCGA-MN-A4N4-01 12 2705117 2705117 G T CACNA1C Missense_Mutation p.S914I 0.46 deleterious(0) probably_damaging(0.957) TCGA-MN-A4N4-01 12 27553547 27553547 A T ARNTL2 Missense_Mutation p.R334W 0.08 deleterious(0.02) possibly_damaging(0.682) TCGA-MN-A4N4-01 12 2757647 2757647 G A CACNA1C Missense_Mutation p.E1355K 0.06 tolerated(0.58) benign(0.138) TCGA-MN-A4N4-01 12 310985 310985 C A SLC6A12 Missense_Mutation p.G174V 0.43 tolerated(0.51) benign(0.01) TCGA-MN-A4N4-01 12 310986 310986 C A SLC6A12 Nonsense_Mutation p.G174* 0.42 TCGA-MN-A4N4-01 12 31256874 31256874 G A DDX11 Silent p.V940V 0.09 TCGA-MN-A4N4-01 12 32137259 32137259 C T KIAA1551 Nonsense_Mutation p.Q1124* 0.04 TCGA-MN-A4N4-01 12 40076660 40076660 G T C12orf40 Nonsense_Mutation p.E312* 0.58 TCGA-MN-A4N4-01 12 41463807 41463807 C T CNTN1 Silent p.A1009A 0.06 TCGA-MN-A4N4-01 12 41966351 41966351 G A PDZRN4 Silent p.Q590Q 0.51 TCGA-MN-A4N4-01 12 41966838 41966838 G C PDZRN4 Missense_Mutation p.D753H 0.06 deleterious(0.01) possibly_damaging(0.907) TCGA-MN-A4N4-01 12 43846346 43846346 T A ADAMTS20 Missense_Mutation p.N638I 0.09 deleterious(0) probably_damaging(0.915) TCGA-MN-A4N4-01 12 43858416 43858416 C G ADAMTS20 Missense_Mutation p.G496A 0.07 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 12 43860496 43860496 G T ADAMTS20 Missense_Mutation p.S442R 0.10 tolerated(0.05) benign(0.398) TCGA-MN-A4N4-01 12 45269077 45269077 C G NELL2 Missense_Mutation p.G89R 0.21 tolerated(0.4) possibly_damaging(0.834) TCGA-MN-A4N4-01 12 4554566 4554566 C A FGF6 Silent p.L57L 0.06 TCGA-MN-A4N4-01 12 4554571 4554571 T G FGF6 Missense_Mutation p.T56P 0.07 deleterious(0.01) benign(0.132) TCGA-MN-A4N4-01 12 46245178 46245178 G C ARID2 Missense_Mutation p.R1091T 0.12 tolerated_low_confidence(0.07) possibly_damaging(0.791) TCGA-MN-A4N4-01 12 4919408 4919408 C A KCNA6 Silent p.L67L 0.10 TCGA-MN-A4N4-01 12 50036084 50036084 A T PRPF40B Missense_Mutation p.R651W 0.20 tolerated(0.07) probably_damaging(0.987) TCGA-MN-A4N4-01 12 51590671 51590671 C T POU6F1 5'UTR 0.18 TCGA-MN-A4N4-01 12 51891031 51891031 C T SLC4A8 Intron 0.18 TCGA-MN-A4N4-01 12 52845511 52845511 G T KRT6B Missense_Mutation p.L118I 0.13 tolerated(0.39) unknown(0) TCGA-MN-A4N4-01 12 52943885 52943885 A T KRT71 Missense_Mutation p.L195Q 0.17 tolerated(0.06) benign(0.344) TCGA-MN-A4N4-01 12 52979952 52979952 G A KRT72 Silent p.V450V 0.18 TCGA-MN-A4N4-01 12 53096952 53096952 C T KRT77 Silent p.G89G 0.21 TCGA-MN-A4N4-01 12 54385556 54385556 C A RP11-834C11.12 Intron 0.29 TCGA-MN-A4N4-01 12 54903456 54903457 CC - NCKAP1L Frame_Shift_Del p.P171Qfs*13 0.14 TCGA-MN-A4N4-01 12 56088670 56088670 C A ITGA7 Silent p.S700S 0.22 TCGA-MN-A4N4-01 12 56482537 56482537 G A ERBB3 Missense_Mutation p.E332K 0.22 tolerated(0.15) possibly_damaging(0.67) TCGA-MN-A4N4-01 12 57548025 57548025 C T LRP1 Silent p.G292G 0.11 TCGA-MN-A4N4-01 12 57570823 57570823 G T LRP1 Splice_Site p.X1331_splice 0.10 TCGA-MN-A4N4-01 12 58112076 58112076 G A OS9 Missense_Mutation p.D428N 0.06 deleterious(0.01) possibly_damaging(0.753) TCGA-MN-A4N4-01 12 58135931 58135931 A T AGAP2 5'Flank 0.54 TCGA-MN-A4N4-01 12 5860068 5860068 G T ANO2 Missense_Mutation p.P371Q 0.38 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 12 5860069 5860069 G T ANO2 Missense_Mutation p.P371T 0.38 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 12 6080792 6080792 C A VWF Silent p.R2507R 0.10 TCGA-MN-A4N4-01 12 6173538 6173538 G T VWF Missense_Mutation p.R436S 0.37 tolerated(0.15) benign(0.067) TCGA-MN-A4N4-01 12 62778050 62778050 A G USP15 Silent p.L480L 0.18 TCGA-MN-A4N4-01 12 6707253 6707253 A G CHD4 Missense_Mutation p.C567R 0.29 tolerated(0.19) probably_damaging(0.951) TCGA-MN-A4N4-01 12 67706666 67706666 A T CAND1 3'UTR 0.19 TCGA-MN-A4N4-01 12 6971651 6971651 C T USP5 Missense_Mutation p.S564L 0.07 deleterious(0) probably_damaging(0.959) TCGA-MN-A4N4-01 12 69983324 69983324 C G CCT2 Nonsense_Mutation p.S169* 0.21 TCGA-MN-A4N4-01 12 7064629 7064629 G T PTPN6 Missense_Mutation p.G243V 0.13 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 12 71029450 71029450 C A PTPRB Splice_Site p.X151_splice 0.15 TCGA-MN-A4N4-01 12 75698574 75698574 G T CAPS2 Missense_Mutation p.P267T 0.21 deleterious(0) possibly_damaging(0.792) TCGA-MN-A4N4-01 12 7947055 7947055 G A NANOG Silent p.V139V 0.15 TCGA-MN-A4N4-01 12 81111287 81111287 C A MYF5 Missense_Mutation p.P149T 0.24 tolerated(0.1) possibly_damaging(0.825) TCGA-MN-A4N4-01 12 81111334 81111334 T A MYF5 Silent p.S164S 0.15 TCGA-MN-A4N4-01 12 81627215 81627215 G A ACSS3 Missense_Mutation p.A562T 0.31 deleterious(0) probably_damaging(0.948) TCGA-MN-A4N4-01 12 81688775 81688775 G T PPFIA2 Silent p.R922R 0.12 TCGA-MN-A4N4-01 12 81839476 81839476 G A PPFIA2 Silent p.C143C 0.17 TCGA-MN-A4N4-01 12 8327850 8327851 - T ZNF705A Frame_Shift_Ins p.L57Ffs*29 0.19 TCGA-MN-A4N4-01 12 85449777 85449777 G C LRRIQ1 Missense_Mutation p.K402N 0.21 tolerated(0.05) benign(0.132) TCGA-MN-A4N4-01 12 85450529 85450529 G A LRRIQ1 Missense_Mutation p.S653N 0.16 tolerated(0.36) benign(0.006) TCGA-MN-A4N4-01 12 8756903 8756903 C A AICDA Missense_Mutation p.A192S 0.45 tolerated_low_confidence(0.08) benign(0.045) TCGA-MN-A4N4-01 12 90028881 90028881 T C ATP2B1 Missense_Mutation p.Q185R 0.23 deleterious(0.01) probably_damaging(0.986) TCGA-MN-A4N4-01 12 9009819 9009819 T A A2ML1 Missense_Mutation p.C970S 0.47 deleterious(0) probably_damaging(0.934) TCGA-MN-A4N4-01 12 9242575 9242575 C A A2M Nonsense_Mutation p.E881* 0.41 TCGA-MN-A4N4-01 12 9355245 9355245 G C PZP Missense_Mutation p.F101L 0.38 tolerated(0.1) benign(0.081) TCGA-MN-A4N4-01 12 95603414 95603414 C T FGD6 Missense_Mutation p.R549H 0.21 tolerated_low_confidence(0.95) benign(0.001) TCGA-MN-A4N4-01 12 97078807 97078807 G T C12orf55 Missense_Mutation p.R1935S 0.19 tolerated(0.18) benign(0) TCGA-MN-A4N4-01 12 9754098 9754098 T A KLRB1 Silent p.S61S 0.42 TCGA-MN-A4N4-01 12 9995033 9995033 G A KLRF1 Splice_Site p.X197_splice 0.18 TCGA-MN-A4N4-01 13 101833212 101833212 C T NALCN Intron 0.27 TCGA-MN-A4N4-01 13 101890161 101890161 C A NALCN Missense_Mutation p.G460V 0.32 tolerated(0.07) probably_damaging(0.967) TCGA-MN-A4N4-01 13 103053849 103053849 C A FGF14 Missense_Mutation p.K60N 0.10 tolerated(0.07) benign(0.01) TCGA-MN-A4N4-01 13 103446052 103446052 C A KDELC1 Missense_Mutation p.A165S 0.16 tolerated(0.57) benign(0.003) TCGA-MN-A4N4-01 13 21751066 21751066 C T MRP63 Missense_Mutation p.T4I 0.22 tolerated(0.06) benign(0.039) TCGA-MN-A4N4-01 13 25875926 25875926 C G NUPL1 Missense_Mutation p.F5L 0.33 tolerated(0.19) unknown(0) TCGA-MN-A4N4-01 13 27259981 27259981 G T WASF3 Nonstop_Mutation p.*503Lext*27 0.19 TCGA-MN-A4N4-01 13 28903806 28903806 T C FLT1 Missense_Mutation p.I885V 0.19 deleterious(0) probably_damaging(0.977) TCGA-MN-A4N4-01 13 29005430 29005430 G A FLT1 Silent p.S277S 0.23 TCGA-MN-A4N4-01 13 29600749 29600749 G A MTUS2 Silent p.K648K 0.32 TCGA-MN-A4N4-01 13 31037772 31037772 A T HMGB1 Missense_Mutation p.Y16N 0.06 deleterious(0.01) benign(0.37) TCGA-MN-A4N4-01 13 38158943 38158943 C A POSTN Missense_Mutation p.V340L 0.21 tolerated(0.41) benign(0.126) TCGA-MN-A4N4-01 13 39262316 39262316 T A FREM2 Missense_Mutation p.W279R 0.05 deleterious(0.02) benign(0.327) TCGA-MN-A4N4-01 13 39450188 39450188 G T FREM2 Missense_Mutation p.A2771S 0.27 tolerated(0.4) benign(0.002) TCGA-MN-A4N4-01 13 39544409 39544409 C A STOML3 Silent p.L143L 0.14 TCGA-MN-A4N4-01 13 44433833 44433833 C A CCDC122 Missense_Mutation p.G177V 0.23 deleterious(0.02) benign(0.002) TCGA-MN-A4N4-01 13 46542136 46542136 G A ZC3H13 Missense_Mutation p.S1275L 0.19 unknown(0) TCGA-MN-A4N4-01 13 46544582 46544582 T A ZC3H13 Missense_Mutation p.E829D 0.13 unknown(0) TCGA-MN-A4N4-01 13 46559471 46559471 C A ZC3H13 Missense_Mutation p.G561C 0.26 probably_damaging(1) TCGA-MN-A4N4-01 13 46718621 46718621 C A LCP1 Missense_Mutation p.W403C 0.09 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 13 49281666 49281666 T A CYSLTR2 Missense_Mutation p.L238Q 0.23 tolerated(0.63) benign(0.098) TCGA-MN-A4N4-01 13 58207296 58207296 C G PCDH17 Missense_Mutation p.Q206E 0.16 deleterious(0.05) benign(0.1) TCGA-MN-A4N4-01 13 61068701 61068701 A G TDRD3 Missense_Mutation p.R284G 0.06 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 13 61985690 61985690 T A PCDH20 Missense_Mutation p.S848C 0.10 deleterious(0.03) benign(0.023) TCGA-MN-A4N4-01 13 61987482 61987482 C A PCDH20 Silent p.L250L 0.19 TCGA-MN-A4N4-01 13 64321142 64321142 G T AL445989.1 Missense_Mutation p.C70F 0.40 unknown(0) TCGA-MN-A4N4-01 13 70370987 70370987 G C KLHL1 Missense_Mutation p.L508V 0.28 deleterious(0.01) probably_damaging(0.919) TCGA-MN-A4N4-01 13 70681815 70681815 C T KLHL1 Missense_Mutation p.R6Q 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.885) TCGA-MN-A4N4-01 13 77566205 77566205 G T CLN5 Missense_Mutation p.R40I 0.13 tolerated_low_confidence(0.08) benign(0) TCGA-MN-A4N4-01 13 78133957 78133957 G T SCEL Missense_Mutation p.R60S 0.20 deleterious(0) probably_damaging(0.925) TCGA-MN-A4N4-01 13 86369917 86369917 C A SLITRK6 Missense_Mutation p.G243C 0.51 deleterious(0) probably_damaging(0.938) TCGA-MN-A4N4-01 13 88328100 88328100 G T SLITRK5 Nonsense_Mutation p.E153* 0.04 TCGA-MN-A4N4-01 13 88328596 88328596 C G SLITRK5 Missense_Mutation p.T318S 0.06 tolerated(0.14) benign(0.05) TCGA-MN-A4N4-01 13 94680115 94680115 G T GPC6 Missense_Mutation p.A282S 0.11 deleterious(0) benign(0.217) TCGA-MN-A4N4-01 13 95121298 95121298 T C DCT Silent p.G99G 0.08 TCGA-MN-A4N4-01 13 95271476 95271476 G T GPR180 Missense_Mutation p.W193L 0.13 deleterious(0.04) benign(0.132) TCGA-MN-A4N4-01 13 97639959 97639959 C A OXGR1 Missense_Mutation p.A19S 0.42 tolerated(0.74) benign(0.007) TCGA-MN-A4N4-01 14 100795944 100795944 G A SLC25A47 Missense_Mutation p.E297K 0.16 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 14 101451120 101451120 G A SNORD114-24 RNA 0.16 TCGA-MN-A4N4-01 14 101453434 101453434 G T SNORD114-26 RNA 0.27 TCGA-MN-A4N4-01 14 102449535 102449535 G T DYNC1H1 Missense_Mutation p.V381L 0.22 possibly_damaging(0.458) TCGA-MN-A4N4-01 14 102912201 102912201 G T TECPR2 Missense_Mutation p.A998S 0.08 deleterious(0) possibly_damaging(0.904) TCGA-MN-A4N4-01 14 105181143 105181143 C T INF2 Missense_Mutation p.S1215L 0.24 deleterious_low_confidence(0) unknown(0) TCGA-MN-A4N4-01 14 105419214 105419214 C G AHNAK2 Silent p.V858V 0.18 TCGA-MN-A4N4-01 14 106110218 106110218 G T IGHG2 Silent p.R134R 0.12 TCGA-MN-A4N4-01 14 106494401 106494401 C A IGHV2-5 Missense_Mutation p.V31L 0.44 tolerated(0.16) benign(0.003) TCGA-MN-A4N4-01 14 106539345 106539345 C G IGHV1-8 Missense_Mutation p.E29Q 0.06 deleterious(0.02) possibly_damaging(0.57) TCGA-MN-A4N4-01 14 106691702 106691702 C T IGHV3-21 Missense_Mutation p.E108K 0.12 deleterious_low_confidence(0.03) benign(0.105) TCGA-MN-A4N4-01 14 106691831 106691831 C G IGHV3-21 Missense_Mutation p.E65Q 0.10 tolerated_low_confidence(0.14) possibly_damaging(0.551) TCGA-MN-A4N4-01 14 106780765 106780765 A T IGHV4-28 Silent p.P33P 0.06 TCGA-MN-A4N4-01 14 107034931 107034931 C A IGHV5-51 Missense_Mutation p.S50I 0.12 deleterious(0.01) benign(0.246) TCGA-MN-A4N4-01 14 107083496 107083496 G T IGHV4-59 Silent p.T36T 0.16 TCGA-MN-A4N4-01 14 19553442 19553442 C A POTEG Missense_Mutation p.P9Q 0.11 deleterious_low_confidence(0) possibly_damaging(0.738) TCGA-MN-A4N4-01 14 20345098 20345098 T C OR4K2 Silent p.T224T 0.06 TCGA-MN-A4N4-01 14 20482660 20482660 G T OR4K14 Silent p.A231A 0.11 TCGA-MN-A4N4-01 14 20528261 20528261 C A OR4L1 Silent p.R20R 0.18 TCGA-MN-A4N4-01 14 20711193 20711193 C A OR11H4 Silent p.I81I 0.22 TCGA-MN-A4N4-01 14 21216280 21216280 C A EDDM3A 3'UTR 0.29 TCGA-MN-A4N4-01 14 21542220 21542220 C T ARHGEF40 Missense_Mutation p.P111S 0.07 deleterious(0.02) probably_damaging(0.986) TCGA-MN-A4N4-01 14 22337431 22337431 C G TRAV13-1 Silent p.G74G 0.24 TCGA-MN-A4N4-01 14 23243652 23243652 T A SLC7A7 Missense_Mutation p.S386C 0.18 tolerated(0.07) possibly_damaging(0.656) TCGA-MN-A4N4-01 14 23355422 23355422 C A REM2 Silent p.R237R 0.14 TCGA-MN-A4N4-01 14 23586926 23586926 C G CEBPE Missense_Mutation p.E206Q 0.07 deleterious(0) probably_damaging(0.992) TCGA-MN-A4N4-01 14 23857878 23857878 G T MYH6 Intron 0.24 TCGA-MN-A4N4-01 14 24911971 24911971 C G SDR39U1 Missense_Mutation p.R2P 0.06 deleterious(0.01) probably_damaging(0.956) TCGA-MN-A4N4-01 14 26917986 26917986 C A NOVA1 Nonsense_Mutation p.E235* 0.25 TCGA-MN-A4N4-01 14 30066964 30066964 C A PRKD1 Missense_Mutation p.V723L 0.23 tolerated(0.05) possibly_damaging(0.791) TCGA-MN-A4N4-01 14 31917457 31917457 C G DTD2 Missense_Mutation p.E129Q 0.34 tolerated(0.39) benign(0.052) TCGA-MN-A4N4-01 14 33046325 33046325 G T AKAP6 Splice_Site p.X783_splice 0.36 TCGA-MN-A4N4-01 14 34266712 34266712 C A NPAS3 Missense_Mutation p.L451M 0.29 tolerated(0.06) probably_damaging(0.969) TCGA-MN-A4N4-01 14 35872911 35872911 C A NFKBIA Missense_Mutation p.Q107H 0.33 deleterious(0.03) benign(0.051) TCGA-MN-A4N4-01 14 38679167 38679167 C G SSTR1 Silent p.P191P 0.21 TCGA-MN-A4N4-01 14 39510009 39510009 T A SEC23A Missense_Mutation p.D690V 0.23 tolerated(0.13) benign(0.067) TCGA-MN-A4N4-01 14 39510010 39510010 C A SEC23A Missense_Mutation p.D690Y 0.22 deleterious(0.02) benign(0.212) TCGA-MN-A4N4-01 14 42355819 42355819 C A LRFN5 5'UTR 0.28 TCGA-MN-A4N4-01 14 42373450 42373450 G T LRFN5 3'UTR 0.39 TCGA-MN-A4N4-01 14 45431826 45431826 G C FAM179B Missense_Mutation p.A68P 0.17 deleterious_low_confidence(0.04) benign(0.009) TCGA-MN-A4N4-01 14 45542540 45542540 G A FAM179B Missense_Mutation p.E1647K 0.25 deleterious(0.04) probably_damaging(0.983) TCGA-MN-A4N4-01 14 47120343 47120343 G C RPL10L Nonsense_Mutation p.Y199* 0.28 TCGA-MN-A4N4-01 14 47121001 47121001 G T RPL10L 5'UTR 0.23 TCGA-MN-A4N4-01 14 50069182 50069182 G A LRR1 Missense_Mutation p.S93N 0.28 tolerated(0.15) possibly_damaging(0.677) TCGA-MN-A4N4-01 14 51446129 51446129 C G TRIM9 Silent p.A682A 0.28 TCGA-MN-A4N4-01 14 51448586 51448587 - T TRIM9 Frame_Shift_Ins p.D613Efs*11 0.15 TCGA-MN-A4N4-01 14 52433430 52433430 C A GNG2 3'UTR 0.23 TCGA-MN-A4N4-01 14 54976643 54976643 G T CGRRF1 5'UTR 0.29 TCGA-MN-A4N4-01 14 57114063 57114063 G T TMEM260 Missense_Mutation p.A658S 0.19 tolerated(0.39) benign(0.024) TCGA-MN-A4N4-01 14 58681922 58681922 G A ACTR10 Splice_Site p.X173_splice 0.28 TCGA-MN-A4N4-01 14 58690364 58690364 T G ACTR10 Missense_Mutation p.L220R 0.27 tolerated(0.06) possibly_damaging(0.718) TCGA-MN-A4N4-01 14 63174460 63174460 C A KCNH5 Missense_Mutation p.Q911H 0.28 tolerated_low_confidence(0.66) benign(0.002) TCGA-MN-A4N4-01 14 64194140 64194140 G A SGPP1 Nonsense_Mutation p.Q175* 0.09 TCGA-MN-A4N4-01 14 64463803 64463803 G C SYNE2 Missense_Mutation p.E1027Q 0.13 probably_damaging(0.917) TCGA-MN-A4N4-01 14 64464045 64464045 G T SYNE2 Missense_Mutation p.R1060I 0.35 benign(0.17) TCGA-MN-A4N4-01 14 64727423 64727423 C T ESR2 Silent p.Q232Q 0.20 TCGA-MN-A4N4-01 14 64935578 64935578 G T AKAP5 Nonsense_Mutation p.E156* 0.06 TCGA-MN-A4N4-01 14 68257294 68257294 G A ZFYVE26 Missense_Mutation p.A917V 0.32 deleterious(0) probably_damaging(0.997) TCGA-MN-A4N4-01 14 71445201 71445204 TAAC AAT PCNX Nonsense_Mutation p.L716* 0.17 TCGA-MN-A4N4-01 14 74179620 74179620 C G PNMA1 Missense_Mutation p.E241D 0.07 tolerated(0.54) benign(0.003) TCGA-MN-A4N4-01 14 74360539 74360539 G T ZNF410 Nonsense_Mutation p.G25* 0.21 TCGA-MN-A4N4-01 14 74413269 74413269 C G FAM161B Missense_Mutation p.E95Q 0.05 deleterious(0.02) possibly_damaging(0.691) TCGA-MN-A4N4-01 14 75276401 75276401 C T YLPM1 Missense_Mutation p.H1614Y 0.27 possibly_damaging(0.854) TCGA-MN-A4N4-01 14 79181241 79181241 C G NRXN3 Silent p.A228A 0.35 TCGA-MN-A4N4-01 14 86089223 86089223 G A FLRT2 Silent p.V455V 0.07 TCGA-MN-A4N4-01 14 90651206 90651206 C T KCNK13 Silent p.I362I 0.12 TCGA-MN-A4N4-01 14 91252635 91252635 C A TTC7B Silent p.L53L 0.16 TCGA-MN-A4N4-01 14 91739123 91739123 G A CCDC88C Missense_Mutation p.P1978L 0.21 tolerated(1) benign(0.001) TCGA-MN-A4N4-01 14 93273276 93273276 C T GOLGA5 Missense_Mutation p.S247L 0.11 tolerated(0.08) benign(0.031) TCGA-MN-A4N4-01 14 93714902 93714902 C A BTBD7 Missense_Mutation p.G681C 0.24 deleterious(0.03) possibly_damaging(0.884) TCGA-MN-A4N4-01 14 93760476 93760476 C A BTBD7 Missense_Mutation p.R297L 0.17 tolerated(0.07) probably_damaging(0.947) TCGA-MN-A4N4-01 14 94052998 94052998 A G UNC79 Missense_Mutation p.R777G 0.09 deleterious(0.05) benign(0.068) TCGA-MN-A4N4-01 14 94776180 94776180 G T SERPINA6 Silent p.G259G 0.25 TCGA-MN-A4N4-01 14 94936106 94936106 G T SERPINA9 Silent p.A42A 0.27 TCGA-MN-A4N4-01 14 95557422 95557422 C A DICER1 Missense_Mutation p.R1851L 0.28 deleterious(0.01) possibly_damaging(0.77) TCGA-MN-A4N4-01 15 102261472 102261472 C T TARSL2 Silent p.L141L 0.29 TCGA-MN-A4N4-01 15 20496659 20496659 C G CHEK2P2 RNA 0.10 TCGA-MN-A4N4-01 15 22369410 22369410 T A OR4M2 Missense_Mutation p.L279I 0.19 tolerated(0.29) benign(0) TCGA-MN-A4N4-01 15 22383204 22383204 C T OR4N4 Silent p.V244V 0.05 TCGA-MN-A4N4-01 15 23811918 23811918 G C MKRN3 Missense_Mutation p.G330A 0.13 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 15 24922303 24922303 C A NPAP1 Missense_Mutation p.A430D 0.20 deleterious(0.03) probably_damaging(0.976) TCGA-MN-A4N4-01 15 25417700 25417700 A T SNORD115-3 5'Flank 0.23 TCGA-MN-A4N4-01 15 25474051 25474051 G T SNORD115-33 5'Flank 0.28 TCGA-MN-A4N4-01 15 25483203 25483203 A G SNORD115-37 RNA 0.12 TCGA-MN-A4N4-01 15 26793245 26793245 C A GABRB3 Nonsense_Mutation p.E373* 0.10 TCGA-MN-A4N4-01 15 31218081 31218081 G T FAN1 Silent p.T809T 0.18 TCGA-MN-A4N4-01 15 31822943 31822943 C A OTUD7A Missense_Mutation p.D207Y 0.24 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 15 34078113 34078113 G A RYR3 Silent p.L3173L 0.26 TCGA-MN-A4N4-01 15 34123255 34123255 C A RYR3 Missense_Mutation p.T3809N 0.11 possibly_damaging(0.471) TCGA-MN-A4N4-01 15 34140574 34140574 C G RYR3 Missense_Mutation p.S4527C 0.06 possibly_damaging(0.469) TCGA-MN-A4N4-01 15 34355842 34355842 C A CHRM5 Silent p.S308S 0.12 TCGA-MN-A4N4-01 15 34634191 34634191 T A NOP10 Missense_Mutation p.Q58L 0.32 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N4-01 15 37100530 37100530 G T C15orf41 Missense_Mutation p.G241V 0.23 deleterious(0) probably_damaging(0.99) TCGA-MN-A4N4-01 15 37390311 37390311 G A MEIS2 Silent p.P34P 0.13 TCGA-MN-A4N4-01 15 41066554 41066554 C A DNAJC17 Silent p.A227A 0.23 TCGA-MN-A4N4-01 15 43476676 43476676 G T TMEM62 Silent p.R608R 0.20 TCGA-MN-A4N4-01 15 45389484 45389484 G T DUOX2 Silent p.R1267R 0.16 TCGA-MN-A4N4-01 15 48063769 48063769 C A SEMA6D Silent p.T1003T 0.14 TCGA-MN-A4N4-01 15 48787758 48787758 C A FBN1 Missense_Mutation p.C816F 0.13 probably_damaging(0.999) TCGA-MN-A4N4-01 15 50866543 50866543 C G TRPM7 Missense_Mutation p.E1746Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 15 51012167 51012167 C TA SPPL2A Frame_Shift_Ins p.M486Ifs*8 0.22 TCGA-MN-A4N4-01 15 51017460 51017460 T A SPPL2A Missense_Mutation p.M403L 0.18 tolerated(0.45) benign(0.004) TCGA-MN-A4N4-01 15 55677870 55677870 T A CCPG1 Missense_Mutation p.S35C 0.17 tolerated(0.22) possibly_damaging(0.882) TCGA-MN-A4N4-01 15 58004326 58004326 G C POLR2M Silent p.T301T 0.14 TCGA-MN-A4N4-01 15 59515350 59515350 G A MYO1E Missense_Mutation p.T273M 0.15 tolerated(0.31) possibly_damaging(0.555) TCGA-MN-A4N4-01 15 59961130 59961130 A - BNIP2 Frame_Shift_Del p.V406Afs*12 0.16 TCGA-MN-A4N4-01 15 60747597 60747597 T C NARG2 Missense_Mutation p.I237M 0.21 deleterious(0.04) benign(0.129) TCGA-MN-A4N4-01 15 60795017 60795017 C G RORA Missense_Mutation p.Q408H 0.23 tolerated(0.12) benign(0.014) TCGA-MN-A4N4-01 15 64008546 64008546 C T HERC1 Missense_Mutation p.E1369K 0.05 benign(0.013) TCGA-MN-A4N4-01 15 65621336 65621336 G T IGDCC3 Missense_Mutation p.P786T 0.18 tolerated_low_confidence(0.11) benign(0) TCGA-MN-A4N4-01 15 66797704 66797704 G C ZWILCH Missense_Mutation p.E10Q 0.06 tolerated(0.12) possibly_damaging(0.898) TCGA-MN-A4N4-01 15 72954853 72954853 C A GOLGA6B Missense_Mutation p.Q370K 0.10 tolerated(0.89) benign(0.092) TCGA-MN-A4N4-01 15 73552639 73552639 C G NEO1 Missense_Mutation p.S744C 0.19 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 15 74178933 74178933 G A TBC1D21 Missense_Mutation p.D253N 0.20 deleterious(0) probably_damaging(0.997) TCGA-MN-A4N4-01 15 74476207 74476207 A G STRA6 Silent p.F469F 0.11 TCGA-MN-A4N4-01 15 74919956 74919956 A T CLK3 Missense_Mutation p.H478L 0.18 deleterious(0) probably_damaging(0.987) TCGA-MN-A4N4-01 15 75673049 75673049 C T SIN3A Missense_Mutation p.V1102M 0.21 tolerated(0.2) benign(0.123) TCGA-MN-A4N4-01 15 76430164 76430164 T A C15orf27 Missense_Mutation p.L52Q 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-MN-A4N4-01 15 77241468 77241468 G A RCN2 Missense_Mutation p.E287K 0.20 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 15 78789628 78789628 C T IREB2 Missense_Mutation p.S919F 0.08 deleterious(0.05) benign(0.001) TCGA-MN-A4N4-01 15 79183909 79183909 G T MORF4L1 Nonsense_Mutation p.E184* 0.35 TCGA-MN-A4N4-01 15 80181466 80181466 C A ST20-MTHFS Missense_Mutation p.E92D 0.18 tolerated(0.89) benign(0.001) TCGA-MN-A4N4-01 15 81572084 81572084 C T IL16 Silent p.Y350Y 0.17 TCGA-MN-A4N4-01 15 83328639 83328639 G T AP3B2 Missense_Mutation p.A1019D 0.14 deleterious(0) possibly_damaging(0.665) TCGA-MN-A4N4-01 15 84581900 84581900 T G ADAMTSL3 Missense_Mutation p.V586G 0.16 deleterious(0.02) possibly_damaging(0.772) TCGA-MN-A4N4-01 15 90799512 90799512 C G TTLL13 Missense_Mutation p.Q230E 0.13 deleterious(0) probably_damaging(0.997) TCGA-MN-A4N4-01 15 93489273 93489273 A T CHD2 Missense_Mutation p.S402C 0.19 deleterious(0) benign(0.109) TCGA-MN-A4N4-01 15 97328413 97328413 G T SPATA8 3'UTR 0.23 TCGA-MN-A4N4-01 15 99459974 99459974 G A IGF1R Silent p.E690E 0.32 TCGA-MN-A4N4-01 16 11071251 11071251 G T CLEC16A Missense_Mutation p.D300Y 0.22 deleterious(0.01) benign(0.01) TCGA-MN-A4N4-01 16 11868106 11868106 T C ZC3H7A Missense_Mutation p.N297D 0.28 tolerated(1) benign(0) TCGA-MN-A4N4-01 16 1254177 1254177 G C CACNA1H Missense_Mutation p.G724R 0.10 deleterious(0.04) benign(0.096) TCGA-MN-A4N4-01 16 1272688 1272688 A T TPSG1 Missense_Mutation p.C159S 0.19 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N4-01 16 1399303 1399303 G T TSR3 3'UTR 0.15 TCGA-MN-A4N4-01 16 14397884 14397884 C T MIR193B RNA 0.09 TCGA-MN-A4N4-01 16 1573581 1573581 C A IFT140 Missense_Mutation p.D1131Y 0.20 deleterious(0) probably_damaging(0.95) TCGA-MN-A4N4-01 16 17211546 17211546 G A XYLT1 Silent p.L838L 0.07 TCGA-MN-A4N4-01 16 17232305 17232305 G C XYLT1 Silent p.R557R 0.20 TCGA-MN-A4N4-01 16 18794288 18794288 G A RPS15A 3'UTR 0.11 TCGA-MN-A4N4-01 16 2024386 2024386 G T TBL3 Nonsense_Mutation p.E67* 0.17 TCGA-MN-A4N4-01 16 20337722 20337722 G T GP2 Missense_Mutation p.S11Y 0.25 deleterious_low_confidence(0.04) benign(0.312) TCGA-MN-A4N4-01 16 20432579 20432579 G A ACSM5 Splice_Site p.X208_splice 0.27 TCGA-MN-A4N4-01 16 20432688 20432688 G T ACSM5 Missense_Mutation p.Q244H 0.11 tolerated(1) benign(0.006) TCGA-MN-A4N4-01 16 20448451 20448451 T A ACSM5 Missense_Mutation p.D462E 0.16 tolerated(0.33) benign(0.084) TCGA-MN-A4N4-01 16 20975809 20975809 C G DNAH3 Missense_Mutation p.E3133Q 0.06 deleterious(0.01) benign(0.257) TCGA-MN-A4N4-01 16 21696565 21696565 C A OTOA Missense_Mutation p.N94K 0.29 deleterious(0.01) possibly_damaging(0.462) TCGA-MN-A4N4-01 16 2203150 2203150 T C RAB26 Missense_Mutation p.Y199H 0.07 tolerated(0.18) possibly_damaging(0.9) TCGA-MN-A4N4-01 16 23646430 23646430 C T PALB2 Silent p.Q479Q 0.05 TCGA-MN-A4N4-01 16 27480738 27480738 C A GTF3C1 Missense_Mutation p.G1650C 0.38 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 16 2809355 2809355 C T SRRM2 Missense_Mutation p.S231F 0.09 unknown(0) TCGA-MN-A4N4-01 16 2816510 2816510 C G SRRM2 Missense_Mutation p.S1994C 0.24 unknown(0) TCGA-MN-A4N4-01 16 28617118 28617118 C G SULT1A1 3'UTR 0.08 TCGA-MN-A4N4-01 16 28617479 28617479 G A SULT1A1 Nonsense_Mutation p.Q225* 0.06 TCGA-MN-A4N4-01 16 28997869 28997869 G T LAT Missense_Mutation p.V143L 0.34 deleterious_low_confidence(0.03) benign(0.014) TCGA-MN-A4N4-01 16 29934567 29934567 C T KCTD13 Missense_Mutation p.E120K 0.17 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 16 30005442 30005442 C T HIRIP3 Missense_Mutation p.G342R 0.26 tolerated(0.53) benign(0.05) TCGA-MN-A4N4-01 16 30035054 30035054 G A C16orf92 Missense_Mutation p.R46K 0.11 tolerated(0.08) possibly_damaging(0.567) TCGA-MN-A4N4-01 16 30747679 30747679 C T SRCAP Silent p.S2296S 0.35 TCGA-MN-A4N4-01 16 30747680 30747680 C T SRCAP Missense_Mutation p.R2297W 0.35 probably_damaging(0.963) TCGA-MN-A4N4-01 16 31090371 31090371 T C ZNF646 Missense_Mutation p.M909T 0.09 tolerated(0.59) benign(0.001) TCGA-MN-A4N4-01 16 31371783 31371783 G T ITGAX Missense_Mutation p.G287V 0.33 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 16 31424184 31424184 C A ITGAD Missense_Mutation p.P578H 0.17 deleterious(0.01) benign(0.118) TCGA-MN-A4N4-01 16 3142750 3142750 G T ZSCAN10 Missense_Mutation p.S8R 0.38 deleterious(0) possibly_damaging(0.791) TCGA-MN-A4N4-01 16 31471185 31471185 G T ARMC5 Missense_Mutation p.V114L 0.38 tolerated_low_confidence(0.2) unknown(0) TCGA-MN-A4N4-01 16 31895846 31895846 G T ZNF267 Missense_Mutation p.V11L 0.22 deleterious(0.04) benign(0.006) TCGA-MN-A4N4-01 16 32892094 32892094 C G SLC6A10P RNA 0.25 TCGA-MN-A4N4-01 16 3349789 3349789 G C TIGD7 Missense_Mutation p.H276D 0.13 tolerated(0.52) benign(0) TCGA-MN-A4N4-01 16 3367318 3367318 G C ZNF75A Missense_Mutation p.E114Q 0.06 tolerated(0.07) benign(0.178) TCGA-MN-A4N4-01 16 3406430 3406430 C G OR2C1 Missense_Mutation p.L164V 0.05 tolerated(0.22) benign(0.065) TCGA-MN-A4N4-01 16 34624175 34624175 G A RP11-488I20.3 RNA 0.16 TCGA-MN-A4N4-01 16 3487174 3487174 C G ZNF597 Missense_Mutation p.Q175H 0.05 deleterious(0.01) probably_damaging(0.981) TCGA-MN-A4N4-01 16 3487301 3487301 G C ZNF597 Missense_Mutation p.S133C 0.05 deleterious(0) probably_damaging(0.966) TCGA-MN-A4N4-01 16 3544729 3544731 CAG AT C16orf90 Frame_Shift_Del p.L65Mfs*196 0.27 TCGA-MN-A4N4-01 16 3778145 3778145 C T CREBBP Missense_Mutation p.M2301I 0.09 unknown(0) TCGA-MN-A4N4-01 16 4242845 4242845 T A SRL Missense_Mutation p.K244M 0.30 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 16 47630430 47630430 G T PHKB Missense_Mutation p.A451S 0.15 tolerated(0.36) probably_damaging(0.999) TCGA-MN-A4N4-01 16 48596271 48596271 C G N4BP1 Missense_Mutation p.E95Q 0.08 tolerated(1) benign(0) TCGA-MN-A4N4-01 16 49669702 49669702 G T ZNF423 Missense_Mutation p.R1121S 0.31 deleterious(0) possibly_damaging(0.844) TCGA-MN-A4N4-01 16 50744743 50744743 G A NOD2 Silent p.T307T 0.28 TCGA-MN-A4N4-01 16 50783814 50783814 C T CYLD Nonsense_Mutation p.Q69* 0.07 TCGA-MN-A4N4-01 16 5145516 5145516 C G FAM86A Splice_Site p.X33_splice 0.05 TCGA-MN-A4N4-01 16 53404637 53404637 C A RP11-44F14.1 RNA 0.13 TCGA-MN-A4N4-01 16 53698861 53698861 C G RPGRIP1L Missense_Mutation p.Q388H 0.16 deleterious(0) benign(0.172) TCGA-MN-A4N4-01 16 54318964 54318964 C T IRX3 Missense_Mutation p.D277N 0.09 tolerated(0.25) benign(0.002) TCGA-MN-A4N4-01 16 56370737 56370737 G A GNAO1 Missense_Mutation p.G230S 0.23 tolerated(0.12) possibly_damaging(0.781) TCGA-MN-A4N4-01 16 56659724 56659724 C T MT1E 5'UTR 0.35 TCGA-MN-A4N4-01 16 56906695 56906695 C A SLC12A3 Silent p.L364L 0.26 TCGA-MN-A4N4-01 16 633391 633391 C T PIGQ Silent p.P680P 0.05 TCGA-MN-A4N4-01 16 65026921 65026921 C A CDH11 Missense_Mutation p.Q180H 0.22 deleterious(0.01) possibly_damaging(0.562) TCGA-MN-A4N4-01 16 67281374 67281374 C T FHOD1 5'UTR 0.16 TCGA-MN-A4N4-01 16 67315483 67315483 G T PLEKHG4 Missense_Mutation p.G276V 0.29 tolerated(0.05) possibly_damaging(0.889) TCGA-MN-A4N4-01 16 67681432 67681432 C A RLTPR Silent p.A266A 0.27 TCGA-MN-A4N4-01 16 68279360 68279360 G T PLA2G15 Missense_Mutation p.G11W 0.14 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-MN-A4N4-01 16 70363367 70363367 C A DDX19B Silent p.I260I 0.08 TCGA-MN-A4N4-01 16 70975590 70975590 G T HYDIN Missense_Mutation p.Q2268K 0.11 possibly_damaging(0.828) TCGA-MN-A4N4-01 16 716961 716961 G T WDR90 Silent p.G1687G 0.28 TCGA-MN-A4N4-01 16 726420 726420 G A RHBDL1 Missense_Mutation p.A107T 0.12 tolerated(0.6) benign(0.007) TCGA-MN-A4N4-01 16 74908272 74908272 G A WDR59 Silent p.F920F 0.12 TCGA-MN-A4N4-01 16 75574074 75574074 T C TMEM231 Splice_Site p.X286_splice 0.52 TCGA-MN-A4N4-01 16 76461375 76461375 C G CNTNAP4 Missense_Mutation p.D114E 0.20 tolerated(0.21) probably_damaging(0.995) TCGA-MN-A4N4-01 16 84101950 84101950 G C MBTPS1 Missense_Mutation p.Q689E 0.11 tolerated(0.25) benign(0.004) TCGA-MN-A4N4-01 16 86601483 86601483 C G FOXC2 Missense_Mutation p.A181G 0.15 tolerated(0.38) benign(0.001) TCGA-MN-A4N4-01 16 8738439 8738439 G A METTL22 Missense_Mutation p.D346N 0.11 deleterious(0) probably_damaging(0.984) TCGA-MN-A4N4-01 16 89657607 89657607 C G CPNE7 Missense_Mutation p.A489G 0.31 deleterious(0.01) probably_damaging(0.976) TCGA-MN-A4N4-01 16 89696855 89696855 G T DPEP1 Missense_Mutation p.V13F 0.15 tolerated(0.24) benign(0.005) TCGA-MN-A4N4-01 16 89712979 89712979 C A CHMP1A Silent p.V175V 0.17 TCGA-MN-A4N4-01 16 90162653 90162653 G C TUBB8P7 RNA 0.20 TCGA-MN-A4N4-01 17 10258269 10258269 C A MYH13 Nonsense_Mutation p.E282* 0.35 TCGA-MN-A4N4-01 17 10309366 10309366 C A MYH8 Missense_Mutation p.L808F 0.37 tolerated(0.06) benign(0.002) TCGA-MN-A4N4-01 17 10317571 10317571 C A MYH8 Missense_Mutation p.V316F 0.16 deleterious(0) probably_damaging(0.953) TCGA-MN-A4N4-01 17 10404775 10404775 C A MYH1 Silent p.R1130R 0.30 TCGA-MN-A4N4-01 17 10417170 10417170 T C MYH1 Missense_Mutation p.K237E 0.07 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 17 10539066 10539066 C T MYH3 Missense_Mutation p.E1321K 0.08 deleterious(0) probably_damaging(0.989) TCGA-MN-A4N4-01 17 11572723 11572723 C T DNAH9 Missense_Mutation p.R989W 0.07 probably_damaging(0.952) TCGA-MN-A4N4-01 17 11603084 11603084 G T DNAH9 Missense_Mutation p.A1637S 0.35 benign(0.14) TCGA-MN-A4N4-01 17 1377914 1377914 C A MYO1C Missense_Mutation p.R596L 0.31 deleterious(0.04) probably_damaging(0.968) TCGA-MN-A4N4-01 17 15231318 15231318 T A TEKT3 Missense_Mutation p.Q218H 0.42 tolerated(0.11) benign(0.003) TCGA-MN-A4N4-01 17 17697997 17697997 C G RAI1 Missense_Mutation p.L579V 0.06 deleterious(0.04) probably_damaging(0.94) TCGA-MN-A4N4-01 17 18390985 18390985 G T LGALS9C Missense_Mutation p.V120L 0.14 tolerated(0.43) benign(0.011) TCGA-MN-A4N4-01 17 19186861 19186861 G T EPN2 Missense_Mutation p.E143D 0.34 deleterious(0.04) probably_damaging(0.999) TCGA-MN-A4N4-01 17 21730782 21730782 C A UBBP4 Silent p.A28A 0.31 TCGA-MN-A4N4-01 17 26657479 26657479 T C IFT20 Missense_Mutation p.E94G 0.05 deleterious(0) probably_damaging(0.913) TCGA-MN-A4N4-01 17 26857768 26857768 A G FOXN1 Missense_Mutation p.I278V 0.19 tolerated(0.06) probably_damaging(0.928) TCGA-MN-A4N4-01 17 27401207 27401207 G A TIAF1 Missense_Mutation p.P4L 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.851) TCGA-MN-A4N4-01 17 2883648 2883648 C G RAP1GAP2 Missense_Mutation p.Q222E 0.09 tolerated(0.12) benign(0.022) TCGA-MN-A4N4-01 17 30376182 30376182 G C LRRC37B Silent p.V815V 0.08 TCGA-MN-A4N4-01 17 30377081 30377081 G T LRRC37B Silent p.V912V 0.16 TCGA-MN-A4N4-01 17 31618904 31618904 G T ASIC2 Missense_Mutation p.T77K 0.39 tolerated(0.16) possibly_damaging(0.701) TCGA-MN-A4N4-01 17 32954002 32954002 G T TMEM132E Silent p.V218V 0.09 TCGA-MN-A4N4-01 17 32955579 32955579 C A TMEM132E Intron 0.42 TCGA-MN-A4N4-01 17 33585968 33585968 G T SLFN5 Missense_Mutation p.D87Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 17 34072740 34072740 C A GAS2L2 Missense_Mutation p.L592F 0.29 deleterious(0.02) possibly_damaging(0.771) TCGA-MN-A4N4-01 17 34077163 34077163 G T GAS2L2 Missense_Mutation p.P187Q 0.11 deleterious(0.04) benign(0.033) TCGA-MN-A4N4-01 17 34261663 34261663 G T LYZL6 3'UTR 0.27 TCGA-MN-A4N4-01 17 34956174 34956174 C G DHRS11 Silent p.A219A 0.18 TCGA-MN-A4N4-01 17 35300370 35300370 C A LHX1 Missense_Mutation p.A388E 0.23 deleterious(0.03) benign(0.106) TCGA-MN-A4N4-01 17 35913973 35913973 C G SYNRG Missense_Mutation p.D618H 0.10 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 17 37331623 37331623 C T CACNB1 Silent p.T540T 0.06 TCGA-MN-A4N4-01 17 39139320 39139320 C A KRT40 Missense_Mutation p.A170S 0.28 deleterious(0) probably_damaging(0.912) TCGA-MN-A4N4-01 17 39406071 39406071 C T KRTAP9-4 Silent p.S33S 0.07 TCGA-MN-A4N4-01 17 39522854 39522854 C A KRT33B Silent p.R152R 0.25 TCGA-MN-A4N4-01 17 39578641 39578641 C A KRT37 Nonsense_Mutation p.E260* 0.28 TCGA-MN-A4N4-01 17 3962561 3962561 C G ZZEF1 Missense_Mutation p.C1636S 0.31 tolerated(0.22) benign(0.083) TCGA-MN-A4N4-01 17 39680734 39680734 G A KRT19 Missense_Mutation p.A240V 0.08 deleterious(0.02) benign(0.212) TCGA-MN-A4N4-01 17 40344282 40344282 G C GHDC Missense_Mutation p.S289C 0.07 deleterious(0.02) possibly_damaging(0.861) TCGA-MN-A4N4-01 17 40376833 40376833 C T STAT5B Silent p.L113L 0.11 TCGA-MN-A4N4-01 17 41020375 41020375 T C AOC4P RNA 0.24 TCGA-MN-A4N4-01 17 41573548 41573548 G T DHX8 Splice_Site p.X405_splice 0.20 TCGA-MN-A4N4-01 17 42477414 42477414 C G GPATCH8 Missense_Mutation p.K677N 0.14 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-MN-A4N4-01 17 42850448 42850448 G A ADAM11 Missense_Mutation p.D274N 0.26 deleterious(0) possibly_damaging(0.908) TCGA-MN-A4N4-01 17 44051795 44051795 G T MAPT Missense_Mutation p.A89S 0.18 deleterious(0.03) benign(0.202) TCGA-MN-A4N4-01 17 46669527 46669527 G T HOXB5 3'UTR 0.20 TCGA-MN-A4N4-01 17 47486768 47486768 G A PHB Silent p.I106I 0.06 TCGA-MN-A4N4-01 17 49098707 49098707 C A SPAG9 Missense_Mutation p.S268I 0.09 tolerated(0.08) benign(0.147) TCGA-MN-A4N4-01 17 51901071 51901071 G A KIF2B Missense_Mutation p.R226Q 0.26 tolerated(0.51) benign(0.042) TCGA-MN-A4N4-01 17 530465 530465 C A VPS53 Missense_Mutation p.R308L 0.19 tolerated(0.59) benign(0.001) TCGA-MN-A4N4-01 17 55193573 55193573 G T AKAP1 Missense_Mutation p.D795Y 0.24 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 17 56332323 56332323 C A LPO Silent p.A419A 0.24 TCGA-MN-A4N4-01 17 56358093 56358093 G A MPO Silent p.L9L 0.10 TCGA-MN-A4N4-01 17 57288644 57288644 G T SMG8 Missense_Mutation p.R411L 0.23 tolerated(0.11) benign(0.015) TCGA-MN-A4N4-01 17 57682541 57682541 C G DHX40 Nonsense_Mutation p.S656* 0.09 TCGA-MN-A4N4-01 17 60526014 60526014 G A METTL2A Missense_Mutation p.R354Q 0.05 deleterious(0) probably_damaging(0.964) TCGA-MN-A4N4-01 17 60679466 60679466 C T TLK2 Missense_Mutation p.S595L 0.08 deleterious(0) probably_damaging(0.984) TCGA-MN-A4N4-01 17 60814758 60814761 ACCA - MARCH10 Intron 0.19 TCGA-MN-A4N4-01 17 61905501 61905501 G A PSMC5 Missense_Mutation p.E10K 0.16 tolerated_low_confidence(0.1) benign(0.001) TCGA-MN-A4N4-01 17 61949761 61949761 C A CSH2 Intron 0.31 TCGA-MN-A4N4-01 17 61972388 61972388 G A CSH1 Silent p.G216G 0.20 TCGA-MN-A4N4-01 17 61988157 61988157 T A CSHL1 Silent p.A46A 0.11 TCGA-MN-A4N4-01 17 61988161 61988161 C A CSHL1 Missense_Mutation p.R45L 0.12 deleterious(0.01) benign(0.238) TCGA-MN-A4N4-01 17 61988403 61988403 G C CSHL1 Intron 0.10 TCGA-MN-A4N4-01 17 65909151 65909151 G A BPTF Silent p.K1717K 0.06 TCGA-MN-A4N4-01 17 65989128 65989128 A T C17orf58 Intron 0.33 TCGA-MN-A4N4-01 17 66339807 66339807 G T ARSG Missense_Mutation p.G94V 0.18 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 17 66887654 66887654 G A ABCA8 Silent p.A1000A 0.10 TCGA-MN-A4N4-01 17 66887655 66887655 G T ABCA8 Missense_Mutation p.A1000D 0.10 deleterious(0) probably_damaging(0.952) TCGA-MN-A4N4-01 17 67031800 67031800 C G ABCA9 Splice_Site p.X314_splice 0.11 TCGA-MN-A4N4-01 17 6716158 6716158 G C TEKT1 Missense_Mutation p.L282V 0.05 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 17 6716210 6716210 G C TEKT1 Missense_Mutation p.F264L 0.05 tolerated(0.29) benign(0.116) TCGA-MN-A4N4-01 17 6716245 6716245 G A TEKT1 Silent p.L253L 0.06 TCGA-MN-A4N4-01 17 6718509 6718509 G A TEKT1 Missense_Mutation p.S201F 0.13 tolerated(0.64) possibly_damaging(0.722) TCGA-MN-A4N4-01 17 70119947 70119947 G T SOX9 Missense_Mutation p.G317C 0.20 deleterious(0) possibly_damaging(0.868) TCGA-MN-A4N4-01 17 72851107 72851107 G T GRIN2C Missense_Mutation p.P42H 0.24 deleterious(0.01) benign(0.422) TCGA-MN-A4N4-01 17 7339899 7339899 G C TMEM102 Missense_Mutation p.E201Q 0.06 tolerated_low_confidence(0.14) benign(0.008) TCGA-MN-A4N4-01 17 74625198 74625198 G A ST6GALNAC1 Missense_Mutation p.P243S 0.21 benign(0.077) TCGA-MN-A4N4-01 17 75471617 75471617 G T SEPT9 Intron 0.20 TCGA-MN-A4N4-01 17 7577117 7577117 A T TP53 Missense_Mutation p.V274D 0.50 deleterious(0) probably_damaging(0.994) TCGA-MN-A4N4-01 17 77081773 77081773 G C ENGASE Missense_Mutation p.S591T 0.17 tolerated(0.08) possibly_damaging(0.515) TCGA-MN-A4N4-01 17 7750311 7750311 G T KDM6B Missense_Mutation p.G296C 0.14 unknown(0) TCGA-MN-A4N4-01 17 78112900 78112900 G A EIF4A3 Silent p.L216L 0.07 TCGA-MN-A4N4-01 17 7830694 7830694 C T KCNAB3 Silent p.L124L 0.32 TCGA-MN-A4N4-01 17 78727894 78727894 G A RPTOR Missense_Mutation p.E247K 0.20 tolerated(0.17) benign(0.023) TCGA-MN-A4N4-01 17 79095610 79095610 G T AATK Missense_Mutation p.P709H 0.38 deleterious(0.04) possibly_damaging(0.576) TCGA-MN-A4N4-01 17 79495633 79495633 G C FSCN2 Missense_Mutation p.A26P 0.25 deleterious(0) probably_damaging(0.995) TCGA-MN-A4N4-01 17 7976222 7976222 G - ALOX12B Frame_Shift_Del p.P658Rfs*5 0.12 TCGA-MN-A4N4-01 17 79817162 79817162 C G P4HB Missense_Mutation p.D83H 0.07 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 17 79975206 79975206 C A ASPSCR1 3'UTR 0.09 TCGA-MN-A4N4-01 17 80195567 80195567 C T SLC16A3 Silent p.L307L 0.14 TCGA-MN-A4N4-01 17 8638827 8638827 C G CCDC42 Missense_Mutation p.A199P 0.35 tolerated(0.08) probably_damaging(0.998) TCGA-MN-A4N4-01 18 14184184 14184184 C T ANKRD20A5P Intron 0.31 TCGA-MN-A4N4-01 18 14763736 14763736 C G ANKRD30B Missense_Mutation p.T291R 0.37 deleterious(0) probably_damaging(0.966) TCGA-MN-A4N4-01 18 15316741 15316741 C T RNU6-721P 3'Flank 0.12 TCGA-MN-A4N4-01 18 19444611 19444611 G T MIB1 Missense_Mutation p.R1002M 0.34 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 18 19997177 19997177 C T CTAGE1 Missense_Mutation p.E200K 0.09 deleterious(0.02) benign(0.16) TCGA-MN-A4N4-01 18 21422450 21422450 C T LAMA3 Missense_Mutation p.A1143V 0.06 benign(0.002) TCGA-MN-A4N4-01 18 22804948 22804948 T G ZNF521 Missense_Mutation p.K978N 0.10 deleterious(0) probably_damaging(0.997) TCGA-MN-A4N4-01 18 22807042 22807055 GGCCGCTCGGTCCT A ZNF521 Frame_Shift_Del p.E276Vfs*12 0.21 TCGA-MN-A4N4-01 18 22807585 22807585 A - ZNF521 Frame_Shift_Del p.S100Afs*34 0.08 TCGA-MN-A4N4-01 18 2885091 2885091 C A EMILIN2 Silent p.L129L 0.25 TCGA-MN-A4N4-01 18 28918414 28918414 G C DSG1 Missense_Mutation p.D468H 0.13 deleterious(0.01) benign(0.062) TCGA-MN-A4N4-01 18 29340020 29340020 G C SLC25A52 Missense_Mutation p.P212R 0.09 deleterious(0) probably_damaging(0.995) TCGA-MN-A4N4-01 18 31319214 31319214 G C ASXL3 Missense_Mutation p.E616Q 0.25 benign(0.064) TCGA-MN-A4N4-01 18 331763 331763 T C COLEC12 Silent p.K656K 0.18 TCGA-MN-A4N4-01 18 33795492 33795497 GTGGGG CTGGGGGT MOCOS Frame_Shift_Ins p.C450Sfs*9 0.23 TCGA-MN-A4N4-01 18 34833896 34833896 C A CELF4 Missense_Mutation p.V447L 0.17 deleterious(0) possibly_damaging(0.868) TCGA-MN-A4N4-01 18 40851687 40851687 G T SYT4 Silent p.S320S 0.15 TCGA-MN-A4N4-01 18 48450486 48450486 G C ME2 Missense_Mutation p.D359H 0.13 tolerated(0.11) possibly_damaging(0.781) TCGA-MN-A4N4-01 18 5291625 5291625 C G ZBTB14 Silent p.T194T 0.32 TCGA-MN-A4N4-01 18 61306546 61306546 C A SERPINB4 Missense_Mutation p.R214M 0.34 tolerated(0.22) possibly_damaging(0.795) TCGA-MN-A4N4-01 18 61582864 61582864 C A SERPINB10 Silent p.T40T 0.25 TCGA-MN-A4N4-01 18 63530153 63530153 G T CDH7 Missense_Mutation p.V622L 0.29 tolerated(0.09) benign(0.354) TCGA-MN-A4N4-01 18 6859896 6859896 G T ARHGAP28 Silent p.V83V 0.31 TCGA-MN-A4N4-01 18 6942086 6942086 C A LAMA1 Nonsense_Mutation p.E3074* 0.25 TCGA-MN-A4N4-01 18 70417453 70417453 G A NETO1 Missense_Mutation p.P462L 0.29 tolerated_low_confidence(0.13) benign(0.113) TCGA-MN-A4N4-01 18 706520 706520 C - ENOSF1 Frame_Shift_Del p.G69Efs*22 0.20 TCGA-MN-A4N4-01 18 7080339 7080339 G T LAMA1 Missense_Mutation p.P60H 0.22 deleterious(0) probably_damaging(0.948) TCGA-MN-A4N4-01 18 74620367 74620367 C G ZNF236 Missense_Mutation p.Q795E 0.06 tolerated(0.38) benign(0.004) TCGA-MN-A4N4-01 18 77703445 77703445 T A PQLC1 Missense_Mutation p.E74V 0.22 deleterious(0) possibly_damaging(0.795) TCGA-MN-A4N4-01 19 10169670 10169670 A C C3P1 RNA 0.14 TCGA-MN-A4N4-01 19 10946725 10946725 T A TMED1 Missense_Mutation p.Q48L 0.36 deleterious(0) probably_damaging(0.979) TCGA-MN-A4N4-01 19 11411786 11411786 C G TSPAN16 Intron 0.18 TCGA-MN-A4N4-01 19 12186396 12186396 C T ZNF844 Missense_Mutation p.P154L 0.11 deleterious(0.04) possibly_damaging(0.908) TCGA-MN-A4N4-01 19 12298901 12298901 C T ZNF136 3'UTR 0.31 TCGA-MN-A4N4-01 19 1272339 1272339 G T CIRBP Intron 0.21 TCGA-MN-A4N4-01 19 12874185 12874185 G A HOOK2 Silent p.L691L 0.37 TCGA-MN-A4N4-01 19 12874186 12874186 G A HOOK2 Silent p.F690F 0.38 TCGA-MN-A4N4-01 19 13186466 13186466 G T NFIX Missense_Mutation p.W312C 0.31 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 19 14000997 14000997 T A C19orf57 Silent p.T224T 0.05 TCGA-MN-A4N4-01 19 14031678 14031678 G A CC2D1A Silent p.K528K 0.07 TCGA-MN-A4N4-01 19 14208578 14208578 G C PRKACA Missense_Mutation p.Q182E 0.12 deleterious(0.03) benign(0.006) TCGA-MN-A4N4-01 19 17337905 17337905 G C OCEL1 Missense_Mutation p.E117Q 0.06 tolerated(0.08) benign(0.338) TCGA-MN-A4N4-01 19 17533169 17533169 G T MVB12A Missense_Mutation p.M105I 0.42 tolerated(0.32) benign(0.005) TCGA-MN-A4N4-01 19 17615394 17615394 C A SLC27A1 Silent p.R638R 0.06 TCGA-MN-A4N4-01 19 17837988 17837988 G T MAP1S Missense_Mutation p.G599C 0.58 deleterious(0.03) possibly_damaging(0.83) TCGA-MN-A4N4-01 19 1820268 1820268 C T REXO1 Missense_Mutation p.E841K 0.19 deleterious(0.04) benign(0.298) TCGA-MN-A4N4-01 19 19906313 19906313 C G ZNF506 Missense_Mutation p.R128T 0.05 tolerated(0.24) possibly_damaging(0.448) TCGA-MN-A4N4-01 19 21606007 21606007 C G ZNF493 Missense_Mutation p.F182L 0.08 tolerated(0.15) probably_damaging(0.995) TCGA-MN-A4N4-01 19 22157531 22157531 C A ZNF208 Missense_Mutation p.R102M 0.38 tolerated(0.05) probably_damaging(0.962) TCGA-MN-A4N4-01 19 22255610 22255610 G C ZNF257 Splice_Site p.X2_splice 0.37 TCGA-MN-A4N4-01 19 22575664 22575664 A G ZNF98 Missense_Mutation p.Y125H 0.23 tolerated(0.09) possibly_damaging(0.462) TCGA-MN-A4N4-01 19 22836767 22836767 G T ZNF492 Missense_Mutation p.G27V 0.28 deleterious(0.03) probably_damaging(0.972) TCGA-MN-A4N4-01 19 22939426 22939426 C A ZNF99 3'Flank 0.34 TCGA-MN-A4N4-01 19 24010603 24010603 G T RPSAP58 Nonsense_Mutation p.E214* 0.17 TCGA-MN-A4N4-01 19 30935751 30935751 T A ZNF536 Missense_Mutation p.S428T 0.06 tolerated(0.08) probably_damaging(0.977) TCGA-MN-A4N4-01 19 31040349 31040349 G T ZNF536 Missense_Mutation p.G1275C 0.51 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-MN-A4N4-01 19 3452590 3452590 C T NFIC Missense_Mutation p.H399Y 0.10 deleterious(0) possibly_damaging(0.885) TCGA-MN-A4N4-01 19 35512753 35512753 G T GRAMD1A Missense_Mutation p.G580C 0.09 tolerated(0.06) benign(0.374) TCGA-MN-A4N4-01 19 35514224 35514224 G T GRAMD1A Missense_Mutation p.W646C 0.18 deleterious(0) probably_damaging(0.993) TCGA-MN-A4N4-01 19 37676093 37676093 C A ZNF585B 3'UTR 0.14 TCGA-MN-A4N4-01 19 3822106 3822106 C T ZFR2 Silent p.R488R 0.21 TCGA-MN-A4N4-01 19 38692560 38692560 G T SIPA1L3 Silent p.P1681P 0.10 TCGA-MN-A4N4-01 19 38964151 38964151 C A RYR1 Missense_Mutation p.F1300L 0.17 benign(0.443) TCGA-MN-A4N4-01 19 38993165 38993165 G T RYR1 Nonsense_Mutation p.E2545* 0.29 TCGA-MN-A4N4-01 19 39109821 39109821 C T EIF3K 5'UTR 0.67 TCGA-MN-A4N4-01 19 39328075 39328075 C T AC104534.3 Missense_Mutation p.D171N 0.06 deleterious(0.04) benign(0.001) TCGA-MN-A4N4-01 19 39591685 39591685 C A PAPL Missense_Mutation p.H302N 0.42 tolerated(0.25) benign(0.014) TCGA-MN-A4N4-01 19 39798581 39798581 G T LRFN1 Silent p.R670R 0.27 TCGA-MN-A4N4-01 19 39899334 39899334 G T ZFP36 Nonsense_Mutation p.E332* 0.09 TCGA-MN-A4N4-01 19 40222003 40222003 G T CLC 3'UTR 0.11 TCGA-MN-A4N4-01 19 40739787 40739787 G A AKT2 Missense_Mutation p.R480C 0.10 deleterious_low_confidence(0) benign(0.247) TCGA-MN-A4N4-01 19 40741976 40741976 G T AKT2 Missense_Mutation p.D332E 0.09 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 19 40904367 40904367 G C PRX Intron 0.53 TCGA-MN-A4N4-01 19 41245390 41245390 G T ITPKC Missense_Mutation p.E659D 0.47 deleterious(0.01) possibly_damaging(0.556) TCGA-MN-A4N4-01 19 43242965 43242965 C A PSG3 Missense_Mutation p.R114L 0.41 tolerated(0.23) benign(0.1) TCGA-MN-A4N4-01 19 43243158 43243158 C A PSG3 Missense_Mutation p.D50Y 0.40 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 19 43268158 43268158 G T PSG8 Missense_Mutation p.Q114K 0.10 tolerated(0.47) benign(0.001) TCGA-MN-A4N4-01 19 43373066 43373066 C A PSG1 Missense_Mutation p.G277V 0.30 deleterious(0) possibly_damaging(0.46) TCGA-MN-A4N4-01 19 43519471 43519471 C A PSG11 Missense_Mutation p.G254V 0.40 deleterious(0.02) benign(0.367) TCGA-MN-A4N4-01 19 44160728 44160728 C G PLAUR Missense_Mutation p.M125I 0.06 tolerated(0.14) possibly_damaging(0.56) TCGA-MN-A4N4-01 19 44604977 44604977 G T ZNF224 Silent p.V13V 0.11 TCGA-MN-A4N4-01 19 44661977 44661977 A T ZNF234 Missense_Mutation p.K603M 0.30 deleterious(0) probably_damaging(0.992) TCGA-MN-A4N4-01 19 44933269 44933269 G C ZNF229 Missense_Mutation p.Q563E 0.05 deleterious(0.01) probably_damaging(0.985) TCGA-MN-A4N4-01 19 45179541 45179542 AG - CEACAM19 Splice_Site p.X142_splice 0.15 TCGA-MN-A4N4-01 19 45565454 45565454 G C CLASRP Splice_Site p.X302_splice 0.09 TCGA-MN-A4N4-01 19 45805712 45805712 G T MARK4 Missense_Mutation p.R668L 0.34 tolerated(0.19) benign(0.129) TCGA-MN-A4N4-01 19 46351009 46351009 C A SYMPK Splice_Site p.X226_splice 0.17 TCGA-MN-A4N4-01 19 46543594 46543594 C T IGFL4 Missense_Mutation p.G51S 0.10 deleterious(0.02) benign(0.164) TCGA-MN-A4N4-01 19 46733605 46733605 C A IGFL1 Missense_Mutation p.Q52K 0.12 deleterious(0.02) benign(0.069) TCGA-MN-A4N4-01 19 47127176 47127176 C T PTGIR Missense_Mutation p.G103S 0.15 tolerated(0.85) possibly_damaging(0.747) TCGA-MN-A4N4-01 19 47231989 47231989 C T STRN4 Missense_Mutation p.E309K 0.07 tolerated(0.06) benign(0.291) TCGA-MN-A4N4-01 19 47589724 47589724 T A ZC3H4 Missense_Mutation p.R263W 0.47 probably_damaging(0.987) TCGA-MN-A4N4-01 19 47941172 47941172 C T SLC8A2 Missense_Mutation p.M648I 0.36 deleterious(0.01) benign(0.065) TCGA-MN-A4N4-01 19 4861347 4861347 T A PLIN3 Silent p.V20V 0.13 TCGA-MN-A4N4-01 19 48807280 48807280 G C CCDC114 Missense_Mutation p.H224Q 0.13 deleterious(0.03) probably_damaging(0.982) TCGA-MN-A4N4-01 19 49225213 49225213 C A RASIP1 Missense_Mutation p.A864S 0.15 tolerated(0.13) possibly_damaging(0.886) TCGA-MN-A4N4-01 19 49447759 49447759 G A DHDH Missense_Mutation p.R297H 0.07 tolerated(0.12) benign(0.073) TCGA-MN-A4N4-01 19 50031870 50031870 C A RCN3 Missense_Mutation p.D47E 0.07 tolerated(0.14) possibly_damaging(0.488) TCGA-MN-A4N4-01 19 50386136 50386136 G A TBC1D17 Missense_Mutation p.R305Q 0.13 tolerated(0.61) benign(0.011) TCGA-MN-A4N4-01 19 50463968 50463968 C - SIGLEC11 Frame_Shift_Del p.D101Tfs*17 0.25 TCGA-MN-A4N4-01 19 50863008 50863008 G C NAPSA Missense_Mutation p.I260M 0.09 deleterious(0.01) probably_damaging(0.932) TCGA-MN-A4N4-01 19 50967736 50967736 G A MYBPC2 Missense_Mutation p.R1121Q 0.24 deleterious(0.04) benign(0.087) TCGA-MN-A4N4-01 19 51021448 51021448 C A LRRC4B Missense_Mutation p.G508W 0.13 tolerated_low_confidence(0.18) possibly_damaging(0.812) TCGA-MN-A4N4-01 19 51381679 51381679 T G KLK2 Missense_Mutation p.L217R 0.06 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 19 51480877 51480877 C T KLK7 Missense_Mutation p.C226Y 0.47 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 19 52272705 52272705 C T FPR2 Missense_Mutation p.T265I 0.07 deleterious(0.05) benign(0.071) TCGA-MN-A4N4-01 19 52942208 52942208 T A ZNF534 Missense_Mutation p.C512S 0.18 deleterious(0.01) possibly_damaging(0.886) TCGA-MN-A4N4-01 19 53015467 53015467 G T ZNF578 3'Flank 0.11 TCGA-MN-A4N4-01 19 53343653 53343653 C A ZNF468 3'UTR 0.28 TCGA-MN-A4N4-01 19 53573327 53573327 C A ZNF160 Nonsense_Mutation p.G154* 0.35 TCGA-MN-A4N4-01 19 53644971 53644971 C T ZNF347 Silent p.E371E 0.04 TCGA-MN-A4N4-01 19 54545592 54545592 G A VSTM1 Silent p.S142S 0.11 TCGA-MN-A4N4-01 19 54621767 54621767 G A PRPF31 Missense_Mutation p.E37K 0.05 tolerated(0.34) unknown(0) TCGA-MN-A4N4-01 19 54866935 54866935 G - LAIR1 Frame_Shift_Del p.P269Hfs*54 0.09 TCGA-MN-A4N4-01 19 55086397 55086397 C A LILRA2 Silent p.P184P 0.26 TCGA-MN-A4N4-01 19 55377999 55377999 A T KIR3DL2 Missense_Mutation p.Q394L 0.34 deleterious(0) benign(0.027) TCGA-MN-A4N4-01 19 55445024 55445024 C G NLRP7 Missense_Mutation p.C852S 0.11 tolerated(0.84) benign(0.062) TCGA-MN-A4N4-01 19 56133065 56133065 C T ZNF784 3'UTR 0.46 TCGA-MN-A4N4-01 19 56297075 56297075 A - NLRP11 Frame_Shift_Del p.N1007Ifs*16 0.10 TCGA-MN-A4N4-01 19 56370573 56370573 C T NLRP4 Missense_Mutation p.S605F 0.07 deleterious(0) probably_damaging(0.957) TCGA-MN-A4N4-01 19 56424579 56424579 C A NLRP13 Missense_Mutation p.V202L 0.10 tolerated(0.05) benign(0.027) TCGA-MN-A4N4-01 19 56539556 56539556 C G NLRP5 Missense_Mutation p.L653V 0.08 deleterious(0) probably_damaging(0.977) TCGA-MN-A4N4-01 19 56539786 56539786 C A NLRP5 Missense_Mutation p.H729Q 0.17 tolerated(0.15) benign(0.073) TCGA-MN-A4N4-01 19 58213190 58213190 T C ZNF154 Missense_Mutation p.Q376R 0.18 tolerated(0.33) benign(0.031) TCGA-MN-A4N4-01 19 5832021 5832021 C A FUT6 Silent p.S186S 0.14 TCGA-MN-A4N4-01 19 58806302 58806302 A G ZNF8 Silent p.K376K 0.14 TCGA-MN-A4N4-01 19 59022778 59022778 G A SLC27A5 Missense_Mutation p.S182F 0.30 deleterious(0.01) possibly_damaging(0.726) TCGA-MN-A4N4-01 19 629550 629550 C G POLRMT Missense_Mutation p.W271S 0.21 deleterious(0) probably_damaging(0.996) TCGA-MN-A4N4-01 19 6928186 6928186 C G EMR1 Missense_Mutation p.I751M 0.07 deleterious(0.01) probably_damaging(0.964) TCGA-MN-A4N4-01 19 7150532 7150532 G C INSR Nonsense_Mutation p.S748* 0.16 TCGA-MN-A4N4-01 19 7830136 7830136 G A CLEC4M Missense_Mutation p.V66M 0.07 tolerated(0.08) possibly_damaging(0.459) TCGA-MN-A4N4-01 19 8180431 8180431 T C FBN3 Missense_Mutation p.Y1269C 0.41 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N4-01 19 8670136 8670136 G T ADAMTS10 Missense_Mutation p.R66S 0.27 tolerated(0.13) probably_damaging(1) TCGA-MN-A4N4-01 19 8976393 8976393 G T MUC16 Silent p.T14145T 0.34 TCGA-MN-A4N4-01 19 9072528 9072528 G A MUC16 Missense_Mutation p.T4973I 0.12 unknown(0) TCGA-MN-A4N4-01 19 9073207 9073207 A T MUC16 Missense_Mutation p.S4747T 0.28 unknown(0) TCGA-MN-A4N4-01 19 9074639 9074639 G T MUC16 Silent p.S4269S 0.23 TCGA-MN-A4N4-01 19 9084072 9084072 G T MUC16 Silent p.P2581P 0.35 TCGA-MN-A4N4-01 19 9213203 9213203 G T OR7G2 Silent p.S260S 0.19 TCGA-MN-A4N4-01 19 9676986 9676986 G A ZNF121 Missense_Mutation p.S268F 0.06 deleterious(0.04) benign(0.156) TCGA-MN-A4N4-01 1 100152286 100152286 G A PALMD Silent p.K102K 0.13 TCGA-MN-A4N4-01 1 10132239 10132239 A G UBE4B Missense_Mutation p.M60V 0.15 tolerated_low_confidence(1) benign(0.019) TCGA-MN-A4N4-01 1 103427815 103427815 G T COL11A1 Missense_Mutation p.P1011T 0.31 unknown(0) TCGA-MN-A4N4-01 1 104160111 104160111 T C AMY2A Missense_Mutation p.Y17H 0.14 tolerated(0.65) benign(0.005) TCGA-MN-A4N4-01 1 108766259 108766259 G T NBPF4 3'UTR 0.15 TCGA-MN-A4N4-01 1 110018286 110018286 G A SYPL2 Silent p.K71K 0.18 TCGA-MN-A4N4-01 1 110033558 110033558 C A ATXN7L2 Missense_Mutation p.A458E 0.13 deleterious(0) possibly_damaging(0.603) TCGA-MN-A4N4-01 1 110086734 110086734 C A GPR61 Missense_Mutation p.P364T 0.26 tolerated(0.51) benign(0.01) TCGA-MN-A4N4-01 1 110148666 110148666 C T GNAT2 Missense_Mutation p.E216K 0.07 deleterious(0) probably_damaging(0.984) TCGA-MN-A4N4-01 1 110217459 110217459 G T GSTM2 3'UTR 0.15 TCGA-MN-A4N4-01 1 110709580 110709580 G T SLC6A17 Missense_Mutation p.R10L 0.09 deleterious(0) benign(0.087) TCGA-MN-A4N4-01 1 11181321 11181321 C T MTOR Silent p.L2305L 0.12 TCGA-MN-A4N4-01 1 111964210 111964210 G C OVGP1 Missense_Mutation p.L232V 0.06 tolerated(0.5) benign(0.133) TCGA-MN-A4N4-01 1 11217213 11217213 C A MTOR Nonsense_Mutation p.E1489* 0.25 TCGA-MN-A4N4-01 1 115128099 115128099 C A DENND2C 3'UTR 0.50 TCGA-MN-A4N4-01 1 115168483 115168483 C A DENND2C Missense_Mutation p.W41C 0.17 tolerated(0.18) benign(0.002) TCGA-MN-A4N4-01 1 115829160 115829160 C A NGF Missense_Mutation p.R86L 0.11 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N4-01 1 118461337 118461337 C T GDAP2 Silent p.L66L 0.08 TCGA-MN-A4N4-01 1 11898489 11898489 G T CLCN6 Missense_Mutation p.R798L 0.25 tolerated(0.07) possibly_damaging(0.904) TCGA-MN-A4N4-01 1 120056632 120056632 T - HSD3B1 Frame_Shift_Del p.E163Rfs*12 0.24 TCGA-MN-A4N4-01 1 120279817 120279817 T A PHGDH Silent p.A291A 0.14 TCGA-MN-A4N4-01 1 120462957 120462957 G A NOTCH2 Nonsense_Mutation p.Q1792* 0.32 TCGA-MN-A4N4-01 1 12059061 12059061 A T MFN2 Missense_Mutation p.H242L 0.14 deleterious(0) probably_damaging(0.997) TCGA-MN-A4N4-01 1 12322098 12322098 C G VPS13D Missense_Mutation p.Q519E 0.13 benign(0) TCGA-MN-A4N4-01 1 12382768 12382768 G C VPS13D Missense_Mutation p.R2627T 0.12 benign(0.028) TCGA-MN-A4N4-01 1 12409389 12409390 GA - VPS13D Frame_Shift_Del p.E3131Vfs*34 0.11 TCGA-MN-A4N4-01 1 12721820 12721820 G T AADACL4 Missense_Mutation p.C135F 0.29 deleterious(0.01) possibly_damaging(0.568) TCGA-MN-A4N4-01 1 149858693 149858693 G C HIST2H2AC Missense_Mutation p.E57Q 0.06 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-MN-A4N4-01 1 149884826 149884826 C A SV2A Silent p.V189V 0.25 TCGA-MN-A4N4-01 1 150483608 150483608 G T ECM1 Missense_Mutation p.E241D 0.31 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N4-01 1 150933357 150933357 C T SETDB1 Missense_Mutation p.S940F 0.10 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-MN-A4N4-01 1 151491571 151491571 G T CGN Missense_Mutation p.Q192H 0.05 tolerated(0.13) benign(0.052) TCGA-MN-A4N4-01 1 151491572 151491572 G T CGN Missense_Mutation p.A193S 0.05 tolerated(0.67) benign(0.009) TCGA-MN-A4N4-01 1 152082681 152082681 C T TCHH Silent p.L1004L 0.08 TCGA-MN-A4N4-01 1 152083055 152083055 C T TCHH Missense_Mutation p.E880K 0.04 unknown(0) TCGA-MN-A4N4-01 1 152128244 152128244 C G RPTN Missense_Mutation p.R444T 0.04 deleterious(0.03) possibly_damaging(0.731) TCGA-MN-A4N4-01 1 152193102 152193102 G T HRNR Missense_Mutation p.R335S 0.23 unknown(0) TCGA-MN-A4N4-01 1 152279619 152279619 C G FLG Missense_Mutation p.E2581D 0.04 possibly_damaging(0.637) TCGA-MN-A4N4-01 1 152323303 152323303 G T FLG2 Missense_Mutation p.S2320Y 0.22 possibly_damaging(0.608) TCGA-MN-A4N4-01 1 152327995 152327995 G C FLG2 Missense_Mutation p.S756C 0.25 unknown(0) TCGA-MN-A4N4-01 1 152328505 152328505 C G FLG2 Missense_Mutation p.G586A 0.12 unknown(0) TCGA-MN-A4N4-01 1 152648474 152648474 G T LCE2C 5'UTR 0.26 TCGA-MN-A4N4-01 1 152659544 152659544 C - LCE2B Frame_Shift_Del p.H76Tfs*39 0.12 TCGA-MN-A4N4-01 1 152759947 152759947 G T LCE1E Missense_Mutation p.G58C 0.15 tolerated_low_confidence(0.19) unknown(0) TCGA-MN-A4N4-01 1 153785903 153785903 C A GATAD2B Silent p.R414R 0.14 TCGA-MN-A4N4-01 1 154558266 154558266 T A ADAR Missense_Mutation p.D1093V 0.15 deleterious(0.03) benign(0.158) TCGA-MN-A4N4-01 1 154558267 154558267 C T ADAR Missense_Mutation p.D1093N 0.15 tolerated(0.22) benign(0.008) TCGA-MN-A4N4-01 1 154841868 154841868 G A KCNN3 Silent p.L191L 0.05 TCGA-MN-A4N4-01 1 155170353 155170353 C G THBS3 Missense_Mutation p.D533H 0.05 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 1 155491343 155491343 G A ASH1L 5'UTR 0.12 TCGA-MN-A4N4-01 1 155735564 155735564 C T GON4L Missense_Mutation p.A1234T 0.13 tolerated_low_confidence(0.06) benign(0.101) TCGA-MN-A4N4-01 1 156498300 156498300 C A IQGAP3 Splice_Site p.X1558_splice 0.30 TCGA-MN-A4N4-01 1 156698856 156698856 C T RRNAD1 5'UTR 0.19 TCGA-MN-A4N4-01 1 156880116 156880116 C T PEAR1 Missense_Mutation p.P590L 0.33 deleterious(0.03) benign(0.076) TCGA-MN-A4N4-01 1 157668288 157668288 C A FCRL3 Nonsense_Mutation p.E62* 0.22 TCGA-MN-A4N4-01 1 158058184 158058184 C T KIRREL Silent p.T328T 0.25 TCGA-MN-A4N4-01 1 158259787 158259787 G T CD1C 5'UTR 0.42 TCGA-MN-A4N4-01 1 158369194 158369194 C G OR10T2 Silent p.L21L 0.18 TCGA-MN-A4N4-01 1 158390158 158390158 G T OR10K2 Missense_Mutation p.P167T 0.25 deleterious(0.02) probably_damaging(0.973) TCGA-MN-A4N4-01 1 158390614 158390614 G T OR10K2 Missense_Mutation p.L15I 0.23 tolerated(0.18) probably_damaging(0.997) TCGA-MN-A4N4-01 1 158609780 158609780 C G SPTA1 Silent p.L1585L 0.34 TCGA-MN-A4N4-01 1 158623154 158623154 C T SPTA1 Missense_Mutation p.R1033K 0.14 tolerated(1) benign(0) TCGA-MN-A4N4-01 1 158906881 158906881 G T PYHIN1 Missense_Mutation p.G61C 0.26 tolerated(0.36) possibly_damaging(0.797) TCGA-MN-A4N4-01 1 159283846 159283846 C A OR10J3 Missense_Mutation p.V202F 0.16 tolerated(0.32) benign(0.02) TCGA-MN-A4N4-01 1 160097452 160097452 G A ATP1A2 Missense_Mutation p.E287K 0.04 tolerated(0.08) possibly_damaging(0.448) TCGA-MN-A4N4-01 1 160493017 160493017 G C SLAMF6 5'UTR 0.07 TCGA-MN-A4N4-01 1 161165369 161165369 G T ADAMTS4 Missense_Mutation p.P383T 0.17 tolerated(0.3) benign(0.047) TCGA-MN-A4N4-01 1 161495211 161495211 C A HSPA6 Missense_Mutation p.L255M 0.44 tolerated_low_confidence(0.14) benign(0.058) TCGA-MN-A4N4-01 1 161697507 161697507 C A FCRLB 3'UTR 0.24 TCGA-MN-A4N4-01 1 161967990 161967990 G T OLFML2B Silent p.R367R 0.37 TCGA-MN-A4N4-01 1 162346643 162346643 C A C1orf111 5'UTR 0.25 TCGA-MN-A4N4-01 1 162825107 162825107 C G C1orf110 Missense_Mutation p.K119N 0.23 deleterious(0.05) benign(0.402) TCGA-MN-A4N4-01 1 163043367 163043367 C A RGS4 Silent p.A208A 0.18 TCGA-MN-A4N4-01 1 163117085 163117085 T A RGS5 3'UTR 0.16 TCGA-MN-A4N4-01 1 16559423 16559423 C G RSG1 Missense_Mutation p.E119Q 0.07 deleterious(0.05) possibly_damaging(0.461) TCGA-MN-A4N4-01 1 166904632 166904632 G C ILDR2 Silent p.V262V 0.08 TCGA-MN-A4N4-01 1 166974573 166974573 T C MAEL Missense_Mutation p.S262P 0.10 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N4-01 1 167096825 167096825 C A DUSP27 Silent p.T819T 0.23 TCGA-MN-A4N4-01 1 167097668 167097668 G T DUSP27 Missense_Mutation p.E1100D 0.08 tolerated(0.07) benign(0.14) TCGA-MN-A4N4-01 1 167805754 167805754 G A ADCY10 Silent p.I1034I 0.07 TCGA-MN-A4N4-01 1 169351408 169351408 G T BLZF1 Missense_Mutation p.L302F 0.25 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 1 169562912 169562912 C A SELP Missense_Mutation p.A780S 0.14 tolerated(0.09) probably_damaging(0.987) TCGA-MN-A4N4-01 1 169562913 169562913 C A SELP Silent p.V779V 0.13 TCGA-MN-A4N4-01 1 169890762 169890762 C A KIFAP3 3'UTR 0.38 TCGA-MN-A4N4-01 1 170043691 170043691 C A KIFAP3 5'UTR 0.35 TCGA-MN-A4N4-01 1 171514751 171514751 G T PRRC2C Missense_Mutation p.D1631Y 0.39 unknown(0) TCGA-MN-A4N4-01 1 17349133 17349133 G A SDHB Silent p.T245T 0.15 TCGA-MN-A4N4-01 1 175046766 175046766 C G TNN Missense_Mutation p.S71W 0.07 deleterious(0.01) possibly_damaging(0.712) TCGA-MN-A4N4-01 1 175048757 175048757 G C TNN Missense_Mutation p.C233S 0.50 deleterious(0) probably_damaging(0.989) TCGA-MN-A4N4-01 1 175087826 175087826 G T TNN Missense_Mutation p.R839M 0.08 deleterious(0.01) possibly_damaging(0.811) TCGA-MN-A4N4-01 1 176525492 176525492 G A PAPPA2 Missense_Mutation p.A12T 0.29 deleterious_low_confidence(0.01) benign(0.036) TCGA-MN-A4N4-01 1 176525940 176525940 G T PAPPA2 Missense_Mutation p.G161V 0.23 deleterious_low_confidence(0.01) benign(0.002) TCGA-MN-A4N4-01 1 176668357 176668357 C A PAPPA2 Silent p.L956L 0.30 TCGA-MN-A4N4-01 1 176760504 176760504 G T PAPPA2 Nonsense_Mutation p.E1636* 0.19 TCGA-MN-A4N4-01 1 176863701 176863701 C G ASTN1 Missense_Mutation p.Q979H 0.10 deleterious(0.02) benign(0.318) TCGA-MN-A4N4-01 1 176915100 176915100 C G ASTN1 Missense_Mutation p.K737N 0.04 tolerated(0.21) benign(0.012) TCGA-MN-A4N4-01 1 177936885 177936885 C T SEC16B Missense_Mutation p.D78N 0.18 tolerated(0.23) benign(0.048) TCGA-MN-A4N4-01 1 178063796 178063796 G T RASAL2 Missense_Mutation p.V57L 0.38 tolerated_low_confidence(0.26) benign(0.002) TCGA-MN-A4N4-01 1 179603636 179603636 C A TDRD5 Missense_Mutation p.P391T 0.20 tolerated(0.35) benign(0.057) TCGA-MN-A4N4-01 1 179603637 179603637 C A TDRD5 Missense_Mutation p.P391Q 0.20 tolerated(0.06) possibly_damaging(0.599) TCGA-MN-A4N4-01 1 181680130 181680130 G T CACNA1E Missense_Mutation p.A366S 0.23 tolerated(0.08) benign(0.364) TCGA-MN-A4N4-01 1 181690897 181690897 C A CACNA1E Missense_Mutation p.L654M 0.25 deleterious(0) possibly_damaging(0.887) TCGA-MN-A4N4-01 1 182836116 182836116 G T DHX9 Nonsense_Mutation p.E499* 0.11 TCGA-MN-A4N4-01 1 182873532 182873532 G C SHCBP1L Missense_Mutation p.S457C 0.18 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 1 18961628 18961629 - A PAX7 Frame_Shift_Ins p.I118Dfs*2 0.11 TCGA-MN-A4N4-01 1 190067754 190067754 C A BRINP3 Missense_Mutation p.L565F 0.21 deleterious(0.04) probably_damaging(0.997) TCGA-MN-A4N4-01 1 190067816 190067816 T G BRINP3 Missense_Mutation p.S545R 0.17 tolerated(0.15) benign(0.024) TCGA-MN-A4N4-01 1 190068079 190068079 C A BRINP3 Missense_Mutation p.R457L 0.06 tolerated(0.66) benign(0.001) TCGA-MN-A4N4-01 1 19510629 19510629 G A UBR4 Missense_Mutation p.S660F 0.08 benign(0.122) TCGA-MN-A4N4-01 1 19565330 19565330 C T EMC1 Missense_Mutation p.D350N 0.27 tolerated(0.2) benign(0.013) TCGA-MN-A4N4-01 1 197091640 197091640 T A ASPM Missense_Mutation p.D1159V 0.25 deleterious(0) possibly_damaging(0.71) TCGA-MN-A4N4-01 1 197115471 197115471 C A ASPM Missense_Mutation p.A33S 0.14 tolerated(0.28) benign(0.03) TCGA-MN-A4N4-01 1 197390485 197390485 C A CRB1 Missense_Mutation p.N509K 0.19 deleterious(0.02) benign(0.14) TCGA-MN-A4N4-01 1 197643273 197643273 G A DENND1B Silent p.F51F 0.10 TCGA-MN-A4N4-01 1 198222169 198222169 G T NEK7 Splice_Site p.X20_splice 0.23 TCGA-MN-A4N4-01 1 198828240 198828240 C G MIR181A1 RNA 0.08 TCGA-MN-A4N4-01 1 200013008 200013008 T G NR5A2 Missense_Mutation p.C103W 0.22 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 1 201081542 201081542 C A CACNA1S 5'UTR 0.36 TCGA-MN-A4N4-01 1 202698303 202698303 T A KDM5B Splice_Site p.X1500_splice 0.23 TCGA-MN-A4N4-01 1 202702698 202702698 G C KDM5B Missense_Mutation p.P1247R 0.10 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 1 203134332 203134332 G T ADORA1 Intron 0.32 TCGA-MN-A4N4-01 1 203455889 203455889 C A PRELP Silent p.S343S 0.24 TCGA-MN-A4N4-01 1 204418313 204418313 C A PIK3C2B Missense_Mutation p.Q782H 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-MN-A4N4-01 1 205238836 205238836 G T TMCC2 Silent p.G502G 0.33 TCGA-MN-A4N4-01 1 206224747 206224747 C A AVPR1B Missense_Mutation p.P103T 0.31 deleterious(0.02) possibly_damaging(0.566) TCGA-MN-A4N4-01 1 207940411 207940411 G - CD46 Frame_Shift_Del p.G243Efs*55 0.16 TCGA-MN-A4N4-01 1 208201402 208201402 C G PLXNA2 Silent p.L1847L 0.17 TCGA-MN-A4N4-01 1 209948949 209948949 C A TRAF3IP3 Silent p.S307S 0.09 TCGA-MN-A4N4-01 1 210948691 210948691 C A KCNH1 Missense_Mutation p.R704M 0.29 deleterious(0) possibly_damaging(0.872) TCGA-MN-A4N4-01 1 212798941 212798941 G C FAM71A Missense_Mutation p.G241A 0.17 deleterious(0) possibly_damaging(0.813) TCGA-MN-A4N4-01 1 213134652 213134652 G T VASH2 Intron 0.20 TCGA-MN-A4N4-01 1 214209278 214209278 G T PROX1 3'UTR 0.40 TCGA-MN-A4N4-01 1 214557043 214557043 C A PTPN14 Nonsense_Mutation p.E719* 0.22 TCGA-MN-A4N4-01 1 214811235 214811235 T C CENPF Silent p.L491L 0.07 TCGA-MN-A4N4-01 1 216166452 216166452 C A USH2A Missense_Mutation p.D2239Y 0.12 benign(0.092) TCGA-MN-A4N4-01 1 216420406 216420406 C G USH2A Missense_Mutation p.C777S 0.14 probably_damaging(1) TCGA-MN-A4N4-01 1 216497615 216497615 T A USH2A Missense_Mutation p.D408V 0.09 benign(0.071) TCGA-MN-A4N4-01 1 220091815 220091815 C A SLC30A10 Missense_Mutation p.G247V 0.34 deleterious(0) probably_damaging(0.927) TCGA-MN-A4N4-01 1 220142279 220142279 C G EPRS Missense_Mutation p.G1470R 0.38 tolerated(0.17) possibly_damaging(0.593) TCGA-MN-A4N4-01 1 220287687 220287687 G T IARS2 Missense_Mutation p.G504V 0.32 tolerated(0.17) benign(0.1) TCGA-MN-A4N4-01 1 220986874 220986874 G C MARC1 3'UTR 0.16 TCGA-MN-A4N4-01 1 222717342 222717342 G T HHIPL2 Missense_Mutation p.L171I 0.14 tolerated(0.06) possibly_damaging(0.874) TCGA-MN-A4N4-01 1 224544695 224544695 C T CNIH4 Silent p.F23F 0.23 TCGA-MN-A4N4-01 1 226128916 226128916 G T LEFTY2 5'UTR 0.47 TCGA-MN-A4N4-01 1 226438584 226438584 G A LIN9 Missense_Mutation p.H375Y 0.09 tolerated(1) benign(0.029) TCGA-MN-A4N4-01 1 226923663 226923663 C G ITPKB Silent p.V499V 0.45 TCGA-MN-A4N4-01 1 228487150 228487150 G T OBSCN Silent p.L4467L 0.39 TCGA-MN-A4N4-01 1 22924644 22924644 G T EPHA8 Missense_Mutation p.G706V 0.11 tolerated(0.11) possibly_damaging(0.745) TCGA-MN-A4N4-01 1 22924651 22924651 G T EPHA8 Silent p.L708L 0.11 TCGA-MN-A4N4-01 1 229631693 229631693 T C NUP133 Silent p.A307A 0.22 TCGA-MN-A4N4-01 1 229794874 229794874 C G URB2 Missense_Mutation p.L1469V 0.05 tolerated(0.18) probably_damaging(0.976) TCGA-MN-A4N4-01 1 231401504 231401504 G C GNPAT Missense_Mutation p.R248P 0.30 deleterious(0) probably_damaging(0.986) TCGA-MN-A4N4-01 1 235292196 235292196 G C TOMM20 5'UTR 0.17 TCGA-MN-A4N4-01 1 236205435 236205435 C A NID1 Missense_Mutation p.G304C 0.32 tolerated(0.19) possibly_damaging(0.469) TCGA-MN-A4N4-01 1 236912553 236912553 G C ACTN2 Missense_Mutation p.E549Q 0.08 tolerated(0.1) benign(0.09) TCGA-MN-A4N4-01 1 237604647 237604647 A T RYR2 Missense_Mutation p.E345V 0.33 benign(0.396) TCGA-MN-A4N4-01 1 237620026 237620026 G T RYR2 Nonsense_Mutation p.E535* 0.10 TCGA-MN-A4N4-01 1 237729923 237729923 G T RYR2 Nonsense_Mutation p.E1091* 0.31 TCGA-MN-A4N4-01 1 237777430 237777430 G T RYR2 Missense_Mutation p.G1668W 0.09 probably_damaging(1) TCGA-MN-A4N4-01 1 237777523 237777523 C A RYR2 Missense_Mutation p.R1699S 0.44 probably_damaging(0.999) TCGA-MN-A4N4-01 1 237778122 237778122 G T RYR2 Silent p.L1898L 0.42 TCGA-MN-A4N4-01 1 237801691 237801691 G A RYR2 Missense_Mutation p.S2276N 0.06 probably_damaging(0.964) TCGA-MN-A4N4-01 1 237868594 237868594 A C RYR2 Missense_Mutation p.K3177N 0.16 benign(0.113) TCGA-MN-A4N4-01 1 237936851 237936851 C A RYR2 Missense_Mutation p.S3893Y 0.10 probably_damaging(0.997) TCGA-MN-A4N4-01 1 237957256 237957256 T A RYR2 Missense_Mutation p.D4624E 0.22 possibly_damaging(0.857) TCGA-MN-A4N4-01 1 237957257 237957257 G T RYR2 Missense_Mutation p.D4625Y 0.22 benign(0.118) TCGA-MN-A4N4-01 1 238053769 238053769 A G ZP4 Missense_Mutation p.I56T 0.20 tolerated(0.77) benign(0.004) TCGA-MN-A4N4-01 1 241850794 241850794 A G WDR64 Missense_Mutation p.M281V 0.09 tolerated(0.31) benign(0.008) TCGA-MN-A4N4-01 1 245027438 245027438 C A HNRNPU Missense_Mutation p.G58C 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-MN-A4N4-01 1 247264355 247264355 C G ZNF669 Missense_Mutation p.R239T 0.12 tolerated(0.24) probably_damaging(0.997) TCGA-MN-A4N4-01 1 247614710 247614710 G C OR2B11 Missense_Mutation p.S192W 0.20 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 1 247752012 247752012 C A OR2G2 Silent p.L117L 0.34 TCGA-MN-A4N4-01 1 247752174 247752174 C T OR2G2 Silent p.F171F 0.07 TCGA-MN-A4N4-01 1 247835951 247835951 A G OR13G1 Silent p.T131T 0.12 TCGA-MN-A4N4-01 1 247901926 247901926 C G OR14K1 Missense_Mutation p.Q4E 0.08 tolerated(0.27) benign(0.003) TCGA-MN-A4N4-01 1 248059312 248059312 C A OR2W3 Silent p.R142R 0.36 TCGA-MN-A4N4-01 1 248059897 248059897 C A OR2W3 3'UTR 0.33 TCGA-MN-A4N4-01 1 248059898 248059898 C A OR2W3 3'UTR 0.35 TCGA-MN-A4N4-01 1 248112720 248112720 C A OR2L8 Silent p.A187A 0.34 TCGA-MN-A4N4-01 1 248113009 248113009 C A OR2L8 Missense_Mutation p.L284I 0.29 deleterious(0.01) possibly_damaging(0.765) TCGA-MN-A4N4-01 1 248128823 248128823 A G OR2AK2 Missense_Mutation p.I64V 0.08 deleterious(0.01) possibly_damaging(0.521) TCGA-MN-A4N4-01 1 248201636 248201636 G T OR2L2 Missense_Mutation p.G23C 0.09 deleterious(0.01) probably_damaging(0.928) TCGA-MN-A4N4-01 1 248224544 248224544 C A OR2L3 Silent p.A187A 0.09 TCGA-MN-A4N4-01 1 248458094 248458094 G A OR2T12 Missense_Mutation p.H263Y 0.27 tolerated(1) benign(0.002) TCGA-MN-A4N4-01 1 249108734 249108734 C A SH3BP5L Missense_Mutation p.V151L 0.14 deleterious(0) probably_damaging(0.951) TCGA-MN-A4N4-01 1 249210883 249210883 G T PGBD2 Nonsense_Mutation p.E34* 0.27 TCGA-MN-A4N4-01 1 27094352 27094352 G T ARID1A Missense_Mutation p.R1020S 0.23 unknown(0) TCGA-MN-A4N4-01 1 27677345 27677345 G A SYTL1 Missense_Mutation p.E356K 0.09 deleterious(0.01) probably_damaging(0.993) TCGA-MN-A4N4-01 1 27875292 27875292 T A AHDC1 Missense_Mutation p.Q1112L 0.32 deleterious(0.01) benign(0.145) TCGA-MN-A4N4-01 1 2938122 2938122 C A ACTRT2 5'UTR 0.15 TCGA-MN-A4N4-01 1 29447848 29447848 A T TMEM200B Missense_Mutation p.W165R 0.38 tolerated(0.47) possibly_damaging(0.896) TCGA-MN-A4N4-01 1 29647337 29647337 G T PTPRU Missense_Mutation p.W1286C 0.13 deleterious_low_confidence(0.02) probably_damaging(0.969) TCGA-MN-A4N4-01 1 31212778 31212778 C T LAPTM5 Missense_Mutation p.E89K 0.30 tolerated(0.06) possibly_damaging(0.72) TCGA-MN-A4N4-01 1 31230511 31230511 G C LAPTM5 Missense_Mutation p.H28D 0.15 deleterious(0.01) probably_damaging(0.993) TCGA-MN-A4N4-01 1 31406157 31406157 G A PUM1 Silent p.Y1156Y 0.17 TCGA-MN-A4N4-01 1 32687573 32687573 C A TMEM234 Silent p.T21T 0.12 TCGA-MN-A4N4-01 1 32740484 32740484 C G LCK Intron 0.17 TCGA-MN-A4N4-01 1 34033422 34033422 G T CSMD2 Intron 0.29 TCGA-MN-A4N4-01 1 34037155 34037155 C A CSMD2 Missense_Mutation p.G2647V 0.21 tolerated(0.16) benign(0.371) TCGA-MN-A4N4-01 1 3424437 3424437 G A MEGF6 Nonsense_Mutation p.Q571* 0.14 TCGA-MN-A4N4-01 1 34663022 34663022 C G C1orf94 Missense_Mutation p.R173G 0.18 tolerated(0.5) benign(0.078) TCGA-MN-A4N4-01 1 3548040 3548040 C T WRAP73 Silent p.V410V 0.36 TCGA-MN-A4N4-01 1 36307053 36307053 G T AGO4 Missense_Mutation p.G671V 0.17 deleterious(0) benign(0.384) TCGA-MN-A4N4-01 1 37324787 37324787 C G GRIK3 Missense_Mutation p.Q342H 0.29 deleterious(0.02) benign(0.013) TCGA-MN-A4N4-01 1 38171195 38171195 G A CDCA8 Missense_Mutation p.D223N 0.10 tolerated(0.2) probably_damaging(0.993) TCGA-MN-A4N4-01 1 38227014 38227015 CT - EPHA10 Intron 0.24 TCGA-MN-A4N4-01 1 38323248 38323248 C T MTF1 Missense_Mutation p.R28K 0.17 tolerated(0.59) benign(0.017) TCGA-MN-A4N4-01 1 39765951 39765951 G A MACF1 Missense_Mutation p.V856I 0.11 benign(0.002) TCGA-MN-A4N4-01 1 40034599 40034599 T C PABPC4 Missense_Mutation p.M251V 0.05 tolerated(0.07) possibly_damaging(0.457) TCGA-MN-A4N4-01 1 40432832 40432832 G T MFSD2A Silent p.L347L 0.24 TCGA-MN-A4N4-01 1 40734155 40734155 G A ZMPSTE24 Nonsense_Mutation p.W141* 0.36 TCGA-MN-A4N4-01 1 40737572 40737572 G C ZMPSTE24 Missense_Mutation p.V212L 0.24 tolerated(0.38) benign(0.006) TCGA-MN-A4N4-01 1 42047784 42047784 C A HIVEP3 Missense_Mutation p.Q895H 0.33 probably_damaging(0.997) TCGA-MN-A4N4-01 1 43021938 43021938 G T CCDC30 Missense_Mutation p.M179I 0.16 tolerated(0.67) benign(0.149) TCGA-MN-A4N4-01 1 43241036 43241036 G A C1orf50 Missense_Mutation p.E191K 0.09 deleterious(0.02) benign(0.242) TCGA-MN-A4N4-01 1 44437938 44437938 C G DPH2 Nonsense_Mutation p.S426* 0.11 TCGA-MN-A4N4-01 1 44474152 44474152 C T SLC6A9 Missense_Mutation p.D228N 0.05 tolerated(0.43) benign(0.128) TCGA-MN-A4N4-01 1 44713611 44713611 C A ERI3 Missense_Mutation p.D311Y 0.15 deleterious(0) probably_damaging(0.997) TCGA-MN-A4N4-01 1 46489460 46489460 C T MAST2 Missense_Mutation p.R530W 0.12 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-MN-A4N4-01 1 46500362 46500362 A T MAST2 Missense_Mutation p.I1341F 0.29 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-MN-A4N4-01 1 4772157 4772157 C A AJAP1 Missense_Mutation p.A76D 0.30 tolerated(0.29) benign(0.009) TCGA-MN-A4N4-01 1 54233523 54233523 C A NDC1 3'UTR 0.25 TCGA-MN-A4N4-01 1 55521812 55521812 G T PCSK9 Missense_Mutation p.G316C 0.67 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 1 55572930 55572930 C - USP24 Frame_Shift_Del p.A1582Qfs*15 0.10 TCGA-MN-A4N4-01 1 62979214 62979214 T C DOCK7 Missense_Mutation p.K1364E 0.06 deleterious(0) benign(0.138) TCGA-MN-A4N4-01 1 66085628 66085628 G T LEPR Nonsense_Mutation p.E805* 0.08 TCGA-MN-A4N4-01 1 66834571 66834571 G C PDE4B Missense_Mutation p.Q588H 0.08 tolerated(0.47) benign(0.002) TCGA-MN-A4N4-01 1 67147722 67147722 C A SGIP1 Missense_Mutation p.P329T 0.12 deleterious_low_confidence(0.05) benign(0.034) TCGA-MN-A4N4-01 1 67560950 67560950 C A C1orf141 Missense_Mutation p.V191F 0.25 deleterious(0.01) probably_damaging(0.946) TCGA-MN-A4N4-01 1 67881016 67881016 C A SERBP1 Missense_Mutation p.A335S 0.14 tolerated(0.34) benign(0.044) TCGA-MN-A4N4-01 1 75037810 75037810 T C C1orf173 Missense_Mutation p.E1195G 0.35 tolerated(0.06) benign(0.013) TCGA-MN-A4N4-01 1 76262741 76262741 G T MSH4 Missense_Mutation p.R24L 0.08 tolerated_low_confidence(0.15) benign(0.018) TCGA-MN-A4N4-01 1 8000021 8000021 G C TNFRSF9 Missense_Mutation p.L12V 0.08 tolerated(1) benign(0.001) TCGA-MN-A4N4-01 1 880946 880946 C T NOC2L Missense_Mutation p.D669N 0.06 deleterious(0.01) possibly_damaging(0.71) TCGA-MN-A4N4-01 1 89846021 89846021 C T GBP6 Silent p.F234F 0.07 TCGA-MN-A4N4-01 1 97700425 97700425 C A DPYD Missense_Mutation p.G809C 0.14 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 1 98058886 98058886 C A DPYD Missense_Mutation p.G339V 0.20 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 1 98144650 98144650 C A DPYD Splice_Site p.X284_splice 0.60 TCGA-MN-A4N4-01 1 99753634 99753634 C A LPPR4 Nonsense_Mutation p.Y112* 0.17 TCGA-MN-A4N4-01 1 99771309 99771309 G T LPPR4 Missense_Mutation p.R345S 0.40 tolerated(0.16) benign(0.004) TCGA-MN-A4N4-01 20 10630189 10630189 C A JAG1 Missense_Mutation p.M443I 0.21 tolerated(0.23) benign(0.049) TCGA-MN-A4N4-01 20 17475314 17475314 T C BFSP1 Missense_Mutation p.E468G 0.17 tolerated(1) benign(0.001) TCGA-MN-A4N4-01 20 20180536 20180536 C G C20orf26 Missense_Mutation p.S641C 0.06 deleterious(0.02) probably_damaging(0.965) TCGA-MN-A4N4-01 20 20232387 20232387 T C C20orf26 Missense_Mutation p.C770R 0.19 deleterious(0) probably_damaging(0.986) TCGA-MN-A4N4-01 20 20493372 20493372 T A RALGAPA2 Silent p.L1547L 0.13 TCGA-MN-A4N4-01 20 21494163 21494163 C A NKX2-2 Missense_Mutation p.G49W 0.30 deleterious(0.01) possibly_damaging(0.533) TCGA-MN-A4N4-01 20 21687487 21687487 C A PAX1 Missense_Mutation p.P233Q 0.16 tolerated(0.24) benign(0.239) TCGA-MN-A4N4-01 20 2290851 2290851 C G TGM3 Missense_Mutation p.T70R 0.10 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 20 23028912 23028912 C A THBD Missense_Mutation p.Q410H 0.22 tolerated(0.05) benign(0.319) TCGA-MN-A4N4-01 20 23804580 23804580 G T CST2 3'UTR 0.15 TCGA-MN-A4N4-01 20 25056989 25056989 T C VSX1 Missense_Mutation p.T336A 0.19 tolerated(0.21) benign(0.004) TCGA-MN-A4N4-01 20 2572998 2572998 G T TMC2 Missense_Mutation p.V293L 0.32 deleterious(0) possibly_damaging(0.893) TCGA-MN-A4N4-01 20 30556528 30556528 C A XKR7 Missense_Mutation p.L184I 0.27 tolerated(0.28) benign(0.028) TCGA-MN-A4N4-01 20 30584664 30584664 C A XKR7 Missense_Mutation p.R382S 0.22 tolerated(0.36) benign(0.33) TCGA-MN-A4N4-01 20 30585221 30585221 G T XKR7 Silent p.G567G 0.34 TCGA-MN-A4N4-01 20 31601730 31601730 G T BPIFB2 Silent p.S141S 0.17 TCGA-MN-A4N4-01 20 32295631 32295631 G A PXMP4 Missense_Mutation p.H174Y 0.06 tolerated(0.22) benign(0.23) TCGA-MN-A4N4-01 20 33364108 33364108 C A NCOA6 Missense_Mutation p.V127F 0.19 possibly_damaging(0.83) TCGA-MN-A4N4-01 20 33969786 33969786 C A UQCC1 Missense_Mutation p.V90F 0.34 deleterious(0.03) probably_damaging(0.962) TCGA-MN-A4N4-01 20 34302265 34302265 C A RBM39 Missense_Mutation p.G313V 0.11 deleterious(0) probably_damaging(0.992) TCGA-MN-A4N4-01 20 36965639 36965639 G T BPI 3'UTR 0.29 TCGA-MN-A4N4-01 20 37531419 37531419 C T PPP1R16B Missense_Mutation p.A227V 0.09 tolerated(0.11) benign(0.005) TCGA-MN-A4N4-01 20 37647446 37647446 G T DHX35 Splice_Site p.X468_splice 0.36 TCGA-MN-A4N4-01 20 39791089 39791089 C T PLCG1 Intron 0.10 TCGA-MN-A4N4-01 20 40045906 40045906 C A CHD6 Missense_Mutation p.A2071S 0.10 tolerated(0.51) benign(0.005) TCGA-MN-A4N4-01 20 40743857 40743857 G A PTPRT Silent p.R1027R 0.33 TCGA-MN-A4N4-01 20 40944618 40944618 G C PTPRT Silent p.V628V 0.29 TCGA-MN-A4N4-01 20 43029995 43029995 G T HNF4A 5'UTR 0.14 TCGA-MN-A4N4-01 20 43723422 43723422 G A KCNS1 3'UTR 0.08 TCGA-MN-A4N4-01 20 44477211 44477211 G A ACOT8 Silent p.F122F 0.20 TCGA-MN-A4N4-01 20 46264785 46264785 C T NCOA3 Missense_Mutation p.P552L 0.07 deleterious(0.02) possibly_damaging(0.887) TCGA-MN-A4N4-01 20 46305861 46305861 T C SULF2 Missense_Mutation p.K404R 0.12 tolerated(0.13) benign(0.062) TCGA-MN-A4N4-01 20 47587801 47587801 C T ARFGEF2 Silent p.V445V 0.36 TCGA-MN-A4N4-01 20 50139925 50139925 G A NFATC2 Silent p.P285P 0.37 TCGA-MN-A4N4-01 20 55020994 55020994 G A CASS4 Silent p.L166L 0.24 TCGA-MN-A4N4-01 20 55026874 55026874 G T CASS4 Splice_Site p.X215_splice 0.17 TCGA-MN-A4N4-01 20 55026919 55026919 C T CASS4 Silent p.G229G 0.22 TCGA-MN-A4N4-01 20 56093759 56093759 G T CTCFL Intron 0.20 TCGA-MN-A4N4-01 20 56188268 56188268 C G ZBP1 Missense_Mutation p.Q207H 0.05 deleterious(0) probably_damaging(0.986) TCGA-MN-A4N4-01 20 57484272 57484272 G T GNAS Splice_Site p.X838_splice 0.37 TCGA-MN-A4N4-01 20 57766530 57766530 C T ZNF831 Silent p.D152D 0.09 TCGA-MN-A4N4-01 20 57766531 57766531 T G ZNF831 Missense_Mutation p.C153G 0.09 deleterious(0) probably_damaging(0.997) TCGA-MN-A4N4-01 20 57829581 57829581 C A ZNF831 Missense_Mutation p.P1606H 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-MN-A4N4-01 20 58571809 58571809 C T CDH26 Missense_Mutation p.S671L 0.16 tolerated(0.75) benign(0.012) TCGA-MN-A4N4-01 20 5904165 5904165 C A CHGB Missense_Mutation p.H459N 0.31 deleterious(0.03) benign(0.152) TCGA-MN-A4N4-01 20 5905683 5905683 C T CHGB Silent p.S674S 0.17 TCGA-MN-A4N4-01 20 60912964 60912965 - C LAMA5 Frame_Shift_Ins p.D641Gfs*42 0.15 TCGA-MN-A4N4-01 20 61525342 61525342 C T DIDO1 Missense_Mutation p.R926K 0.06 benign(0.006) TCGA-MN-A4N4-01 20 61538498 61538498 C A DIDO1 Splice_Site p.X458_splice 0.31 TCGA-MN-A4N4-01 20 62331892 62331892 C A ARFRP1 Intron 0.35 TCGA-MN-A4N4-01 20 9543577 9543577 A G PAK7 Missense_Mutation p.L526P 0.14 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 21 11020853 11020853 T A BAGE2 RNA 0.23 TCGA-MN-A4N4-01 21 11039210 11039210 G A BAGE2 RNA 0.06 TCGA-MN-A4N4-01 21 15746219 15746219 G A HSPA13 Nonsense_Mutation p.Q379* 0.05 TCGA-MN-A4N4-01 21 27284128 27284128 C G APP Missense_Mutation p.E612Q 0.12 tolerated(0.08) possibly_damaging(0.782) TCGA-MN-A4N4-01 21 30357072 30357072 C T LTN1 Missense_Mutation p.A219T 0.47 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 21 30547129 30547129 G T MAP3K7CL Silent p.R215R 0.44 TCGA-MN-A4N4-01 21 31023563 31023563 T G GRIK1 Missense_Mutation p.M277L 0.30 tolerated(0.51) benign(0.028) TCGA-MN-A4N4-01 21 32598101 32598101 C A TIAM1 Missense_Mutation p.G584C 0.35 deleterious(0) probably_damaging(0.98) TCGA-MN-A4N4-01 21 34633010 34633010 G C IFNAR2 Missense_Mutation p.R273T 0.05 deleterious(0.01) possibly_damaging(0.879) TCGA-MN-A4N4-01 21 37785246 37785246 G C CHAF1B Missense_Mutation p.E376Q 0.09 tolerated(0.19) benign(0.197) TCGA-MN-A4N4-01 21 46686322 46686323 CC - POFUT2 Intron 0.38 TCGA-MN-A4N4-01 22 19776300 19776300 C T GNB1L Missense_Mutation p.D306N 0.10 tolerated(0.48) benign(0.021) TCGA-MN-A4N4-01 22 22730725 22730725 G T IGLV5-45 Missense_Mutation p.D74Y 0.09 deleterious(0.03) possibly_damaging(0.524) TCGA-MN-A4N4-01 22 23011178 23011178 T G IGLV3-27 Missense_Mutation p.S81A 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-MN-A4N4-01 22 23165295 23165295 G C IGLV2-8 5'UTR 0.35 TCGA-MN-A4N4-01 22 25131729 25131729 C - PIWIL3 Frame_Shift_Del p.G527Vfs*12 0.09 TCGA-MN-A4N4-01 22 26343750 26343750 G A MYO18B Missense_Mutation p.D1902N 0.31 deleterious(0) possibly_damaging(0.894) TCGA-MN-A4N4-01 22 28193887 28193887 C A MN1 Missense_Mutation p.G882V 0.11 possibly_damaging(0.52) TCGA-MN-A4N4-01 22 30067927 30067927 A T NF2 Missense_Mutation p.N371I 0.33 deleterious(0.02) possibly_damaging(0.904) TCGA-MN-A4N4-01 22 30951977 30951977 C A GAL3ST1 Missense_Mutation p.V79L 0.14 deleterious(0.04) possibly_damaging(0.531) TCGA-MN-A4N4-01 22 31487245 31487245 G A SMTN Silent p.Q412Q 0.12 TCGA-MN-A4N4-01 22 31487345 31487345 G T SMTN Missense_Mutation p.V446L 0.43 tolerated(0.21) benign(0.365) TCGA-MN-A4N4-01 22 32044214 32044214 C G PISD Missense_Mutation p.R65P 0.30 deleterious(0) possibly_damaging(0.798) TCGA-MN-A4N4-01 22 32179912 32179912 C T DEPDC5 Missense_Mutation p.S168L 0.04 deleterious(0) benign(0.113) TCGA-MN-A4N4-01 22 34157501 34157501 T C LARGE 5'UTR 0.31 TCGA-MN-A4N4-01 22 35729396 35729396 G T TOM1 Splice_Site p.X312_splice 0.33 TCGA-MN-A4N4-01 22 36122426 36122426 C A APOL5 Nonsense_Mutation p.S104* 0.12 TCGA-MN-A4N4-01 22 37602995 37602995 C A SSTR3 Missense_Mutation p.C283F 0.15 tolerated(0.76) benign(0.392) TCGA-MN-A4N4-01 22 38016323 38016323 G A GGA1 Missense_Mutation p.E128K 0.06 deleterious(0.04) benign(0.113) TCGA-MN-A4N4-01 22 39884592 39884592 T G MGAT3 Missense_Mutation p.F414V 0.10 deleterious(0.02) benign(0.229) TCGA-MN-A4N4-01 22 40669592 40669592 G T TNRC6B Missense_Mutation p.K1043N 0.38 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 22 43614456 43614456 C T SCUBE1 Missense_Mutation p.E566K 0.05 deleterious(0.05) benign(0.001) TCGA-MN-A4N4-01 22 46657913 46657913 C A PKDREJ Missense_Mutation p.R436L 0.06 deleterious(0.01) possibly_damaging(0.672) TCGA-MN-A4N4-01 2 100035309 100035309 C G REV1 Missense_Mutation p.Q644H 0.18 tolerated(0.06) probably_damaging(0.94) TCGA-MN-A4N4-01 2 101911639 101911639 T A RNF149 Silent p.T155T 0.14 TCGA-MN-A4N4-01 2 102501655 102501655 A G MAP4K4 Missense_Mutation p.Y1031C 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-MN-A4N4-01 2 102959916 102959916 C G IL1RL1 Intron 0.08 TCGA-MN-A4N4-01 2 107073498 107073498 C A RGPD3 Nonsense_Mutation p.G112* 0.22 TCGA-MN-A4N4-01 2 108476256 108476256 T G RGPD4 Silent p.L571L 0.10 TCGA-MN-A4N4-01 2 108868891 108868891 C A SULT1C3 Silent p.A81A 0.37 TCGA-MN-A4N4-01 2 109087236 109087236 G T GCC2 Missense_Mutation p.R484L 0.23 deleterious(0) probably_damaging(0.995) TCGA-MN-A4N4-01 2 109379948 109379948 C G RANBP2 Missense_Mutation p.P985A 0.08 deleterious(0.04) benign(0.002) TCGA-MN-A4N4-01 2 110927505 110927505 C T NPHP1 Missense_Mutation p.E134K 0.07 tolerated(0.14) benign(0.011) TCGA-MN-A4N4-01 2 111907683 111907683 C A BCL2L11 Silent p.R153R 0.17 TCGA-MN-A4N4-01 2 116599810 116599810 C A DPP10 Missense_Mutation p.N764K 0.21 tolerated(0.16) benign(0.068) TCGA-MN-A4N4-01 2 11922625 11922625 G T LPIN1 Missense_Mutation p.R468M 0.17 deleterious(0) benign(0.217) TCGA-MN-A4N4-01 2 11922626 11922626 G T LPIN1 Missense_Mutation p.R468S 0.17 tolerated(0.08) benign(0.061) TCGA-MN-A4N4-01 2 131099249 131099249 G T CCDC115 Missense_Mutation p.R97S 0.17 tolerated(0.51) benign(0.009) TCGA-MN-A4N4-01 2 131126742 131126742 C G PTPN18 Missense_Mutation p.P151A 0.10 tolerated(0.09) benign(0.132) TCGA-MN-A4N4-01 2 131976175 131976175 A G POTEE Missense_Mutation p.H67R 0.04 deleterious_low_confidence(0) benign(0.227) TCGA-MN-A4N4-01 2 132021602 132021602 G T POTEE Silent p.G858G 0.04 TCGA-MN-A4N4-01 2 132558497 132558497 G T C2orf27B Missense_Mutation p.P5H 0.16 unknown(0) TCGA-MN-A4N4-01 2 133174715 133174715 A T GPR39 Missense_Mutation p.I34F 0.17 tolerated(0.1) benign(0.07) TCGA-MN-A4N4-01 2 135741290 135741290 G T MAP3K19 Missense_Mutation p.L1060I 0.13 deleterious(0.04) benign(0.101) TCGA-MN-A4N4-01 2 135744028 135744028 G A MAP3K19 Missense_Mutation p.S805L 0.09 deleterious(0.01) benign(0.132) TCGA-MN-A4N4-01 2 137852612 137852612 G T THSD7B Nonsense_Mutation p.G374* 0.22 TCGA-MN-A4N4-01 2 137990531 137990531 T G THSD7B Missense_Mutation p.C660G 0.18 deleterious(0) possibly_damaging(0.765) TCGA-MN-A4N4-01 2 139429191 139429191 C A NXPH2 Silent p.L32L 0.25 TCGA-MN-A4N4-01 2 140995771 140995771 G T LRP1B Missense_Mutation p.H4504N 0.18 benign(0.107) TCGA-MN-A4N4-01 2 143986237 143986237 G T ARHGAP15 Missense_Mutation p.M128I 0.22 tolerated(0.36) benign(0.008) TCGA-MN-A4N4-01 2 149241147 149241147 A T MBD5 Intron 0.27 TCGA-MN-A4N4-01 2 152518729 152518729 G T NEB Missense_Mutation p.P1964T 0.23 probably_damaging(1) TCGA-MN-A4N4-01 2 155711265 155711265 T A KCNJ3 Missense_Mutation p.Y316N 0.11 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 2 159519885 159519885 A T PKP4 Silent p.A835A 0.21 TCGA-MN-A4N4-01 2 160240155 160240155 C G BAZ2B Missense_Mutation p.L1241F 0.09 probably_damaging(0.98) TCGA-MN-A4N4-01 2 16082395 16082395 A T MYCN Missense_Mutation p.H70L 0.16 tolerated(0.67) benign(0.001) TCGA-MN-A4N4-01 2 165404204 165404204 C A GRB14 Missense_Mutation p.W149C 0.16 deleterious(0.03) probably_damaging(0.949) TCGA-MN-A4N4-01 2 165771773 165771773 G T SLC38A11 Nonsense_Mutation p.C177* 0.17 TCGA-MN-A4N4-01 2 166616013 166616013 T A GALNT3 Silent p.V302V 0.19 TCGA-MN-A4N4-01 2 166616015 166616015 C G GALNT3 Missense_Mutation p.V302L 0.18 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 2 167055456 167055456 C A SCN9A Missense_Mutation p.R1887L 0.23 deleterious(0) possibly_damaging(0.894) TCGA-MN-A4N4-01 2 168107707 168107707 G T XIRP2 Missense_Mutation p.A3269S 0.16 benign(0.023) TCGA-MN-A4N4-01 2 169791846 169791846 C G ABCB11 Missense_Mutation p.E968D 0.06 tolerated(0.39) benign(0.008) TCGA-MN-A4N4-01 2 170072850 170072850 G C LRP2 Silent p.L1913L 0.06 TCGA-MN-A4N4-01 2 170112703 170112703 C A LRP2 Nonsense_Mutation p.E895* 0.20 TCGA-MN-A4N4-01 2 170592214 170592214 A G KLHL23 Missense_Mutation p.I230M 0.20 tolerated(0.06) benign(0.025) TCGA-MN-A4N4-01 2 172195976 172195976 C T METTL8 Silent p.L108L 0.12 TCGA-MN-A4N4-01 2 17697400 17697400 T A RAD51AP2 Missense_Mutation p.Q761H 0.18 deleterious(0.03) probably_damaging(0.947) TCGA-MN-A4N4-01 2 176983899 176983899 C A HOXD10 Silent p.L321L 0.05 TCGA-MN-A4N4-01 2 178936367 178936367 C G PDE11A Silent p.L266L 0.25 TCGA-MN-A4N4-01 2 179436361 179436361 G T TTN Missense_Mutation p.P24833H 0.15 TCGA-MN-A4N4-01 2 179505287 179505287 C A TTN Missense_Mutation p.K13568N 0.06 TCGA-MN-A4N4-01 2 179546399 179546399 G T TTN Missense_Mutation p.P11054Q 0.17 TCGA-MN-A4N4-01 2 179567269 179567269 T G TTN Silent p.T10115T 0.28 TCGA-MN-A4N4-01 2 179586701 179586701 G A TTN Silent p.I7563I 0.05 TCGA-MN-A4N4-01 2 179592841 179592841 C G TTN Silent p.V6570V 0.36 TCGA-MN-A4N4-01 2 179649030 179649030 C T TTN Missense_Mutation p.A848T 0.21 TCGA-MN-A4N4-01 2 181922478 181922478 G T UBE2E3 Missense_Mutation p.G102C 0.05 deleterious(0) probably_damaging(0.994) TCGA-MN-A4N4-01 2 183011797 183011797 G T PDE1A 3'UTR 0.14 TCGA-MN-A4N4-01 2 183291442 183291442 G T PDE1A Intron 0.27 TCGA-MN-A4N4-01 2 185800741 185800741 G T ZNF804A Silent p.G206G 0.24 TCGA-MN-A4N4-01 2 187541997 187541997 G A ITGAV Missense_Mutation p.G1042D 0.18 deleterious(0) possibly_damaging(0.807) TCGA-MN-A4N4-01 2 1893051 1893051 G T MYT1L Missense_Mutation p.P826T 0.16 tolerated(0.4) benign(0.205) TCGA-MN-A4N4-01 2 189931462 189931462 C A COL5A2 Missense_Mutation p.G483V 0.26 probably_damaging(0.998) TCGA-MN-A4N4-01 2 190585481 190585481 C T ANKAR Missense_Mutation p.P868L 0.08 tolerated(0.33) benign(0.097) TCGA-MN-A4N4-01 2 197873728 197873728 C A ANKRD44 Missense_Mutation p.R626L 0.18 tolerated(0.29) possibly_damaging(0.888) TCGA-MN-A4N4-01 2 198540293 198540293 C A RFTN2 5'UTR 0.16 TCGA-MN-A4N4-01 2 200245187 200245187 G - SATB2 Frame_Shift_Del p.P166Lfs*14 0.15 TCGA-MN-A4N4-01 2 201438678 201438678 G T SGOL2 Silent p.R1203R 0.09 TCGA-MN-A4N4-01 2 202588165 202588165 C A ALS2 Splice_Site p.X1171_splice 0.18 TCGA-MN-A4N4-01 2 204013744 204013744 G A NBEAL1 Missense_Mutation p.A1750T 0.15 tolerated(0.18) benign(0.011) TCGA-MN-A4N4-01 2 204066416 204066416 C G NBEAL1 Missense_Mutation p.I2434M 0.07 deleterious(0.02) benign(0.133) TCGA-MN-A4N4-01 2 204591407 204591407 C T CD28 Missense_Mutation p.A35V 0.08 tolerated(0.25) benign(0.123) TCGA-MN-A4N4-01 2 206592625 206592625 G T NRP2 Missense_Mutation p.R334L 0.11 deleterious(0.03) possibly_damaging(0.709) TCGA-MN-A4N4-01 2 206641191 206641191 C A NRP2 Intron 0.30 TCGA-MN-A4N4-01 2 208994248 208994248 A G CRYGC Silent p.L57L 0.05 TCGA-MN-A4N4-01 2 209010870 209010870 C T CRYGB 5'UTR 0.09 TCGA-MN-A4N4-01 2 209169784 209169784 G - PIKFYVE Intron 0.24 TCGA-MN-A4N4-01 2 211464234 211464234 C A CPS1 Missense_Mutation p.Q506K 0.21 tolerated(0.26) benign(0) TCGA-MN-A4N4-01 2 211540453 211540453 T A CPS1 Missense_Mutation p.L1394Q 0.10 deleterious(0) probably_damaging(0.986) TCGA-MN-A4N4-01 2 211541815 211541815 G T CPS1 Silent p.R1459R 0.22 TCGA-MN-A4N4-01 2 215632364 215632366 ATT - BARD1 In_Frame_Del p.N470del 0.16 TCGA-MN-A4N4-01 2 218925282 218925282 C A CXCR2P1 RNA 0.20 TCGA-MN-A4N4-01 2 219563774 219563774 G T STK36 Silent p.R1169R 0.15 TCGA-MN-A4N4-01 2 219679356 219679356 G A CYP27A1 Missense_Mutation p.R451K 0.28 deleterious(0.04) benign(0.248) TCGA-MN-A4N4-01 2 220404194 220404194 G A CHPF Missense_Mutation p.R747C 0.23 deleterious(0) probably_damaging(0.932) TCGA-MN-A4N4-01 2 226516204 226516204 C T NYAP2 Missense_Mutation p.P629S 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.641) TCGA-MN-A4N4-01 2 228881838 228881838 G T SPHKAP Silent p.S1244S 0.22 TCGA-MN-A4N4-01 2 228882064 228882064 C G SPHKAP Missense_Mutation p.R1169P 0.07 deleterious(0.04) benign(0.103) TCGA-MN-A4N4-01 2 228884208 228884208 C A SPHKAP Missense_Mutation p.Q454H 0.20 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 2 231113674 231113674 G A SP140 Missense_Mutation p.E323K 0.22 tolerated(0.15) benign(0.018) TCGA-MN-A4N4-01 2 232879677 232879677 G T DIS3L2 Missense_Mutation p.G14W 0.12 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-MN-A4N4-01 2 234106825 234106825 C A INPP5D Silent p.P914P 0.21 TCGA-MN-A4N4-01 2 234581326 234581326 C G UGT1A9 Nonsense_Mutation p.S249* 0.04 TCGA-MN-A4N4-01 2 234678201 234678201 G C UGT1A10 Intron 0.29 TCGA-MN-A4N4-01 2 237074614 237074614 G A GBX2 Silent p.H330H 0.11 TCGA-MN-A4N4-01 2 240985270 240985270 C T OR6B3 Missense_Mutation p.V74M 0.14 deleterious(0.01) benign(0.068) TCGA-MN-A4N4-01 2 242572659 242572659 C G THAP4 Missense_Mutation p.A305P 0.33 tolerated_low_confidence(0.08) benign(0.261) TCGA-MN-A4N4-01 2 24952479 24952479 C T NCOA1 Missense_Mutation p.S999F 0.15 tolerated(0.07) possibly_damaging(0.591) TCGA-MN-A4N4-01 2 26531875 26531875 A T GPR113 3'Flank 0.31 TCGA-MN-A4N4-01 2 26950582 26950582 A T KCNK3 Missense_Mutation p.M111L 0.17 deleterious(0) probably_damaging(0.987) TCGA-MN-A4N4-01 2 26950927 26950927 G T KCNK3 Missense_Mutation p.V226F 0.16 tolerated(0.06) benign(0.104) TCGA-MN-A4N4-01 2 27360806 27360806 G T C2orf53 Missense_Mutation p.S131Y 0.37 deleterious(0) possibly_damaging(0.804) TCGA-MN-A4N4-01 2 27373037 27373037 G T TCF23 Missense_Mutation p.R90M 0.18 deleterious(0) probably_damaging(0.976) TCGA-MN-A4N4-01 2 27604592 27604592 G C PPM1G Missense_Mutation p.F505L 0.12 tolerated(0.35) benign(0.041) TCGA-MN-A4N4-01 2 27664485 27664485 G T NRBP1 Missense_Mutation p.S500I 0.14 deleterious(0.02) probably_damaging(0.949) TCGA-MN-A4N4-01 2 27746342 27746342 C G GCKR 3'UTR 0.31 TCGA-MN-A4N4-01 2 27802028 27802028 C T C2orf16 Silent p.L863L 0.06 TCGA-MN-A4N4-01 2 29135524 29135524 C T WDR43 Missense_Mutation p.S185L 0.06 deleterious(0) probably_damaging(0.978) TCGA-MN-A4N4-01 2 32678889 32678889 C T BIRC6 Silent p.V1544V 0.07 TCGA-MN-A4N4-01 2 3405632 3405632 G T TRAPPC12 Nonsense_Mutation p.E378* 0.25 TCGA-MN-A4N4-01 2 40656339 40656339 C A SLC8A1 Missense_Mutation p.R361I 0.26 deleterious(0) probably_damaging(0.992) TCGA-MN-A4N4-01 2 49190564 49190564 C A FSHR Nonsense_Mutation p.E466* 0.39 TCGA-MN-A4N4-01 2 50765564 50765564 C T NRXN1 Missense_Mutation p.R697Q 0.30 tolerated(0.11) possibly_damaging(0.592) TCGA-MN-A4N4-01 2 50850585 50850585 G T NRXN1 Missense_Mutation p.A367D 0.26 deleterious(0) probably_damaging(0.951) TCGA-MN-A4N4-01 2 53941579 53941579 C A ASB3 Missense_Mutation p.A343S 0.19 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 2 55253342 55253342 C T RTN4 Silent p.V631V 0.11 TCGA-MN-A4N4-01 2 61719827 61719827 G A XPO1 Missense_Mutation p.H481Y 0.10 deleterious(0.03) benign(0.005) TCGA-MN-A4N4-01 2 67631357 67631357 A G ETAA1 Missense_Mutation p.T515A 0.17 tolerated(0.77) benign(0.164) TCGA-MN-A4N4-01 2 6991688 6991688 C A CMPK2 Silent p.L373L 0.27 TCGA-MN-A4N4-01 2 70904014 70904014 G T ADD2 Silent p.R503R 0.19 TCGA-MN-A4N4-01 2 71360631 71360631 G T MPHOSPH10 Missense_Mutation p.E231D 0.25 tolerated(0.33) benign(0.058) TCGA-MN-A4N4-01 2 7160679 7160679 G T RNF144A Missense_Mutation p.G126V 0.22 tolerated(0.2) benign(0.143) TCGA-MN-A4N4-01 2 72360190 72360190 C A CYP26B1 Missense_Mutation p.G370C 0.14 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 2 72360244 72360244 G T CYP26B1 Missense_Mutation p.R352S 0.16 tolerated(0.14) benign(0.069) TCGA-MN-A4N4-01 2 74328471 74328471 G T TET3 Missense_Mutation p.G1384V 0.28 deleterious(0.01) possibly_damaging(0.841) TCGA-MN-A4N4-01 2 74708963 74708963 C G CCDC142 Silent p.L334L 0.06 TCGA-MN-A4N4-01 2 74763994 74763994 C T LOXL3 Missense_Mutation p.E252K 0.06 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 2 74883723 74883723 G A SEMA4F Missense_Mutation p.V70M 0.25 deleterious(0.01) probably_damaging(0.967) TCGA-MN-A4N4-01 2 74907119 74907119 G T SEMA4F Missense_Mutation p.G699V 0.13 deleterious(0) probably_damaging(0.946) TCGA-MN-A4N4-01 2 77746371 77746371 C T LRRTM4 Silent p.K208K 0.11 TCGA-MN-A4N4-01 2 79386500 79386500 G T REG3A Missense_Mutation p.S11Y 0.19 tolerated(0.13) possibly_damaging(0.646) TCGA-MN-A4N4-01 2 80136878 80136878 C T CTNNA2 Silent p.A337A 0.16 TCGA-MN-A4N4-01 2 86305393 86305393 C G POLR1A Missense_Mutation p.L367F 0.10 tolerated(0.71) benign(0.025) TCGA-MN-A4N4-01 2 88422740 88422740 G T FABP1 Intron 0.22 TCGA-MN-A4N4-01 2 8870893 8870893 G C KIDINS220 Missense_Mutation p.S1758C 0.09 tolerated_low_confidence(0.15) benign(0.008) TCGA-MN-A4N4-01 2 89309477 89309477 G T IGKV1-9 3'Flank 0.31 TCGA-MN-A4N4-01 2 8931286 8931286 C A KIDINS220 Missense_Mutation p.D449Y 0.08 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 2 89339991 89339991 G A IGKV1-12 Silent p.T27T 0.12 TCGA-MN-A4N4-01 2 89568176 89568176 A T IGKV1-33 Splice_Site p.X19_splice 0.12 TCGA-MN-A4N4-01 2 89568177 89568177 C A IGKV1-33 Splice_Site p.X19_splice 0.13 TCGA-MN-A4N4-01 2 89976454 89976454 G T IGKV2D-30 Missense_Mutation p.G109W 0.13 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 2 95484575 95484575 G T ANKRD20A8P RNA 0.28 TCGA-MN-A4N4-01 2 95847464 95847464 G A ZNF2 Silent p.Q297Q 0.08 TCGA-MN-A4N4-01 2 95940352 95940352 C T PROM2 Silent p.L7L 0.08 TCGA-MN-A4N4-01 2 96040954 96040954 G A KCNIP3 Missense_Mutation p.E149K 0.15 deleterious(0.03) possibly_damaging(0.86) TCGA-MN-A4N4-01 2 96953654 96953654 C A SNRNP200 Missense_Mutation p.W1104C 0.19 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 2 99944032 99944032 C T TXNDC9 Missense_Mutation p.V92M 0.20 tolerated(0.16) possibly_damaging(0.794) TCGA-MN-A4N4-01 3 101540717 101540717 G T NXPE3 Silent p.P533P 0.33 TCGA-MN-A4N4-01 3 10188229 10188229 A C VHL Silent p.T124T 0.34 TCGA-MN-A4N4-01 3 10251326 10251326 G C IRAK2 Missense_Mutation p.D160H 0.39 deleterious(0.01) benign(0.114) TCGA-MN-A4N4-01 3 10379997 10379997 C T ATP2B2 Missense_Mutation p.A1095T 0.36 tolerated(0.06) probably_damaging(0.995) TCGA-MN-A4N4-01 3 108300983 108300983 C T KIAA1524 Missense_Mutation p.E142K 0.06 tolerated(0.08) benign(0.207) TCGA-MN-A4N4-01 3 108746723 108746723 C A MORC1 Nonsense_Mutation p.E527* 0.13 TCGA-MN-A4N4-01 3 109046868 109046868 G T DPPA4 Missense_Mutation p.N294K 0.13 deleterious(0.02) probably_damaging(0.986) TCGA-MN-A4N4-01 3 11058895 11058895 G T SLC6A1 5'UTR 0.35 TCGA-MN-A4N4-01 3 111312502 111312502 C A ZBED2 Nonsense_Mutation p.E183* 0.11 TCGA-MN-A4N4-01 3 111426975 111426975 G T PLCXD2 Silent p.G122G 0.11 TCGA-MN-A4N4-01 3 111427069 111427069 C T PLCXD2 Missense_Mutation p.P154S 0.14 tolerated(0.22) benign(0.114) TCGA-MN-A4N4-01 3 112647776 112647776 C G CD200R1 Missense_Mutation p.G219A 0.44 deleterious(0.01) probably_damaging(0.972) TCGA-MN-A4N4-01 3 112648338 112648338 A T CD200R1 Silent p.P73P 0.40 TCGA-MN-A4N4-01 3 113866356 113866356 C A DRD3 Missense_Mutation p.Q144H 0.32 tolerated(0.67) benign(0) TCGA-MN-A4N4-01 3 113866357 113866357 T A DRD3 Missense_Mutation p.Q144L 0.32 tolerated(0.09) benign(0.009) TCGA-MN-A4N4-01 3 114018505 114018505 G T TIGIT Silent p.V151V 0.39 TCGA-MN-A4N4-01 3 115805197 115805197 G T LSAMP Missense_Mutation p.T121N 0.35 deleterious(0) probably_damaging(0.944) TCGA-MN-A4N4-01 3 118865578 118865578 G C C3orf30 Missense_Mutation p.R181T 0.38 deleterious(0.01) benign(0.121) TCGA-MN-A4N4-01 3 118865680 118865680 C A C3orf30 Missense_Mutation p.S215Y 0.29 tolerated(0.08) probably_damaging(0.983) TCGA-MN-A4N4-01 3 119134187 119134187 A C ARHGAP31 Silent p.P1137P 0.11 TCGA-MN-A4N4-01 3 119134524 119134524 G T ARHGAP31 Missense_Mutation p.D1250Y 0.18 deleterious(0.01) possibly_damaging(0.855) TCGA-MN-A4N4-01 3 119367346 119367346 C A POPDC2 Missense_Mutation p.G257V 0.34 deleterious(0) probably_damaging(0.939) TCGA-MN-A4N4-01 3 121340541 121340541 C A FBXO40 Missense_Mutation p.P89T 0.30 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 3 121416859 121416859 C A GOLGB1 Silent p.L837L 0.32 TCGA-MN-A4N4-01 3 12198946 12198946 G - TIMP4 Frame_Shift_Del p.P59Rfs*20 0.26 TCGA-MN-A4N4-01 3 124437805 124437805 G T RP11-71H17.7 5'Flank 0.34 TCGA-MN-A4N4-01 3 12458242 12458242 G T PPARG Nonsense_Mutation p.E287* 0.43 TCGA-MN-A4N4-01 3 124996588 124996588 G A ZNF148 Missense_Mutation p.H217Y 0.15 deleterious(0) possibly_damaging(0.814) TCGA-MN-A4N4-01 3 126201221 126201221 G T UROC1 Missense_Mutation p.D726E 0.19 tolerated(0.17) benign(0.019) TCGA-MN-A4N4-01 3 127339570 127339570 G T MCM2 Silent p.R765R 0.10 TCGA-MN-A4N4-01 3 127981045 127981045 A T EEFSEC Missense_Mutation p.Q200L 0.13 tolerated(0.69) benign(0.006) TCGA-MN-A4N4-01 3 131206585 131206585 C T MRPL3 Splice_Site p.X190_splice 0.16 TCGA-MN-A4N4-01 3 132413787 132413787 C G NPHP3 Missense_Mutation p.D732H 0.05 deleterious(0) possibly_damaging(0.681) TCGA-MN-A4N4-01 3 133473450 133473450 G T TF Missense_Mutation p.G146V 0.30 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 3 137880800 137880800 T C DBR1 Silent p.R522R 0.13 TCGA-MN-A4N4-01 3 138291755 138291755 G A CEP70 Silent p.A5A 0.11 TCGA-MN-A4N4-01 3 138724540 138724540 G T PRR23A Silent p.R191R 0.24 TCGA-MN-A4N4-01 3 141697400 141697400 C A TFDP2 Nonsense_Mutation p.E161* 0.32 TCGA-MN-A4N4-01 3 14220350 14220350 G T LSM3 5'UTR 0.21 TCGA-MN-A4N4-01 3 142746000 142746000 C T U2SURP Silent p.L428L 0.08 TCGA-MN-A4N4-01 3 142840702 142840702 C T CHST2 Silent p.L348L 0.30 TCGA-MN-A4N4-01 3 143412140 143412140 C G SLC9A9 Missense_Mutation p.M181I 0.29 deleterious(0.04) benign(0.014) TCGA-MN-A4N4-01 3 145828166 145828166 C A PLOD2 Silent p.V136V 0.32 TCGA-MN-A4N4-01 3 148558710 148558710 C A CPB1 Missense_Mutation p.S141Y 0.37 deleterious(0.03) probably_damaging(0.995) TCGA-MN-A4N4-01 3 148928104 148928104 C A CP Nonsense_Mutation p.E153* 0.24 TCGA-MN-A4N4-01 3 149205513 149205513 T C TM4SF4 Silent p.N124N 0.08 TCGA-MN-A4N4-01 3 158262012 158262012 A T RSRC1 Missense_Mutation p.K318M 0.15 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-MN-A4N4-01 3 159976353 159976353 G C IFT80 Nonsense_Mutation p.S765* 0.10 TCGA-MN-A4N4-01 3 161220139 161220139 G T OTOL1 Nonsense_Mutation p.G167* 0.30 TCGA-MN-A4N4-01 3 170184720 170184720 G T SLC7A14 3'UTR 0.26 TCGA-MN-A4N4-01 3 170198683 170198683 G T SLC7A14 Missense_Mutation p.A463D 0.30 tolerated(0.39) benign(0.005) TCGA-MN-A4N4-01 3 174814685 174814685 G A NAALADL2 Nonsense_Mutation p.W50* 0.19 TCGA-MN-A4N4-01 3 179426584 179426584 A T USP13 Missense_Mutation p.D215V 0.25 deleterious(0) possibly_damaging(0.788) TCGA-MN-A4N4-01 3 179439258 179439258 G T USP13 Silent p.S323S 0.40 TCGA-MN-A4N4-01 3 180364925 180364925 G - CCDC39 Frame_Shift_Del p.S490Ffs*41 0.08 TCGA-MN-A4N4-01 3 182871591 182871591 C A LAMP3 Missense_Mutation p.G213V 0.13 deleterious(0.05) benign(0.415) TCGA-MN-A4N4-01 3 182871592 182871592 C A LAMP3 Missense_Mutation p.G213W 0.12 deleterious(0) probably_damaging(0.997) TCGA-MN-A4N4-01 3 183699584 183699584 C T ABCC5 Missense_Mutation p.E360K 0.05 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 3 186299788 186299788 G T DNAJB11 Missense_Mutation p.V202L 0.16 deleterious(0.02) probably_damaging(0.991) TCGA-MN-A4N4-01 3 186335035 186335035 G T AHSG Missense_Mutation p.D157Y 0.19 deleterious(0) probably_damaging(0.981) TCGA-MN-A4N4-01 3 186502264 186502264 G C EIF4A2 Missense_Mutation p.E25Q 0.23 tolerated_low_confidence(0.1) benign(0.025) TCGA-MN-A4N4-01 3 187444586 187444586 C A BCL6 Missense_Mutation p.K547N 0.35 deleterious(0) possibly_damaging(0.879) TCGA-MN-A4N4-01 3 189713232 189713232 C G LEPREL1 Splice_Site p.X161_splice 0.12 TCGA-MN-A4N4-01 3 193132429 193132429 T A ATP13A4 Missense_Mutation p.M985L 0.30 tolerated(0.48) benign(0.006) TCGA-MN-A4N4-01 3 19491708 19491708 G T KCNH8 Missense_Mutation p.V496F 0.37 tolerated(0.2) possibly_damaging(0.777) TCGA-MN-A4N4-01 3 196387597 196387597 G T NRROS Missense_Mutation p.Q361H 0.18 tolerated(0.14) benign(0.038) TCGA-MN-A4N4-01 3 36897943 36897943 C A TRANK1 Missense_Mutation p.L1046F 0.33 deleterious(0) probably_damaging(0.946) TCGA-MN-A4N4-01 3 38596038 38596038 G T SCN5A Missense_Mutation p.N1515K 0.36 deleterious(0) possibly_damaging(0.812) TCGA-MN-A4N4-01 3 38743502 38743502 C T SCN10A Silent p.V1495V 0.45 TCGA-MN-A4N4-01 3 39230502 39230502 C A XIRP1 Missense_Mutation p.R145S 0.09 tolerated(0.58) benign(0.028) TCGA-MN-A4N4-01 3 40352406 40352406 G C EIF1B Missense_Mutation p.K18N 0.48 tolerated(0.06) possibly_damaging(0.518) TCGA-MN-A4N4-01 3 41291039 41291039 C T ULK4 Silent p.E1235E 0.28 TCGA-MN-A4N4-01 3 44488061 44488061 C T ZNF445 3'UTR 0.33 TCGA-MN-A4N4-01 3 4459700 4459700 T C SUMF1 Missense_Mutation p.H240R 0.33 tolerated(0.09) benign(0) TCGA-MN-A4N4-01 3 45972589 45972589 C T FYCO1 Missense_Mutation p.E1409K 0.15 tolerated(0.18) benign(0.063) TCGA-MN-A4N4-01 3 46009326 46009326 C G FYCO1 Missense_Mutation p.E500D 0.08 deleterious(0.04) probably_damaging(0.996) TCGA-MN-A4N4-01 3 47454076 47454076 C A PTPN23 Missense_Mutation p.P1464T 0.08 benign(0.035) TCGA-MN-A4N4-01 3 48697067 48697067 G A CELSR3 Nonsense_Mutation p.Q1001* 0.13 TCGA-MN-A4N4-01 3 49162828 49162828 G A LAMB2 Missense_Mutation p.R860C 0.08 deleterious(0) possibly_damaging(0.555) TCGA-MN-A4N4-01 3 49755625 49755625 G C AMIGO3 Missense_Mutation p.P425R 0.18 deleterious(0.01) possibly_damaging(0.907) TCGA-MN-A4N4-01 3 51930855 51930855 G A IQCF1 Missense_Mutation p.S55L 0.14 tolerated(0.41) benign(0) TCGA-MN-A4N4-01 3 56779427 56779427 C G ARHGEF3 Missense_Mutation p.D258H 0.12 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N4-01 3 7348275 7348275 G C GRM7 Silent p.L323L 0.45 TCGA-MN-A4N4-01 3 7620617 7620617 C T GRM7 Missense_Mutation p.T675M 0.07 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 3 93646103 93646103 G T PROS1 Missense_Mutation p.D75E 0.31 tolerated(0.08) benign(0.057) TCGA-MN-A4N4-01 3 9512404 9512404 G A SETD5 Missense_Mutation p.A996T 0.37 tolerated(0.14) benign(0.37) TCGA-MN-A4N4-01 3 98189143 98189143 T A OR5K1 Nonsense_Mutation p.C241* 0.08 TCGA-MN-A4N4-01 3 99568588 99568588 G T FILIP1L Silent p.A644A 0.15 TCGA-MN-A4N4-01 4 100867609 100867609 C A DNAJB14 Silent p.L40L 0.26 TCGA-MN-A4N4-01 4 104032029 104032029 C A CENPE Missense_Mutation p.K2560N 0.09 probably_damaging(0.991) TCGA-MN-A4N4-01 4 10446036 10446036 C A ZNF518B Silent p.L639L 0.14 TCGA-MN-A4N4-01 4 106621078 106621078 C T INTS12 Missense_Mutation p.E29K 0.05 deleterious(0.01) possibly_damaging(0.889) TCGA-MN-A4N4-01 4 107169463 107169463 C G TBCK Missense_Mutation p.E241Q 0.24 tolerated(0.34) benign(0.043) TCGA-MN-A4N4-01 4 107169465 107169465 T A TBCK Splice_Site p.X241_splice 0.26 TCGA-MN-A4N4-01 4 107216292 107216292 T C TBCK Silent p.E75E 0.32 TCGA-MN-A4N4-01 4 113359731 113359731 G T ALPK1 Nonsense_Mutation p.E1094* 0.07 TCGA-MN-A4N4-01 4 114279715 114279715 C A ANK2 Missense_Mutation p.P3314Q 0.07 benign(0.014) TCGA-MN-A4N4-01 4 114288814 114288814 C A ANK2 Missense_Mutation p.P3709T 0.09 probably_damaging(1) TCGA-MN-A4N4-01 4 115856464 115856464 C G NDST4 Missense_Mutation p.L478F 0.34 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N4-01 4 118005285 118005285 C A TRAM1L1 3'UTR 0.19 TCGA-MN-A4N4-01 4 118005286 118005286 C G TRAM1L1 3'UTR 0.19 TCGA-MN-A4N4-01 4 119059326 119059326 A T NDST3 Missense_Mutation p.S448C 0.20 deleterious(0) probably_damaging(0.979) TCGA-MN-A4N4-01 4 119202977 119202977 C G PRSS12 3'UTR 0.36 TCGA-MN-A4N4-01 4 119951360 119951360 G T SYNPO2 Missense_Mutation p.R477I 0.29 tolerated(0.14) benign(0.019) TCGA-MN-A4N4-01 4 121706204 121706204 C - PRDM5 Frame_Shift_Del p.A411Lfs*14 0.09 TCGA-MN-A4N4-01 4 122749568 122749568 C T BBS7 Missense_Mutation p.D627N 0.07 tolerated(0.05) possibly_damaging(0.465) TCGA-MN-A4N4-01 4 13597517 13597517 C T BOD1L1 Missense_Mutation p.E2691K 0.10 benign(0.022) TCGA-MN-A4N4-01 4 141313777 141313777 G T CLGN Missense_Mutation p.A485E 0.23 deleterious(0.02) benign(0.24) TCGA-MN-A4N4-01 4 144918704 144918704 G T GYPB Silent p.R87R 0.31 TCGA-MN-A4N4-01 4 145040914 145040914 A G GYPA Missense_Mutation p.Y53H 0.11 tolerated(0.47) probably_damaging(0.921) TCGA-MN-A4N4-01 4 155665926 155665926 G T LRAT Missense_Mutation p.G150C 0.10 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 4 15717419 15717419 A G BST1 Missense_Mutation p.N234S 0.08 tolerated(0.52) benign(0.004) TCGA-MN-A4N4-01 4 164272318 164272318 C G NPY5R Missense_Mutation p.P298R 0.06 deleterious(0.02) probably_damaging(1) TCGA-MN-A4N4-01 4 166924548 166924548 G T TLL1 Missense_Mutation p.C213F 0.25 deleterious(0) probably_damaging(0.997) TCGA-MN-A4N4-01 4 169146820 169146820 A C DDX60 Missense_Mutation p.L1514R 0.11 deleterious(0) probably_damaging(0.996) TCGA-MN-A4N4-01 4 175896665 175896665 G T ADAM29 5'UTR 0.10 TCGA-MN-A4N4-01 4 17816489 17816489 G C NCAPG Missense_Mutation p.L186F 0.07 deleterious(0.01) possibly_damaging(0.684) TCGA-MN-A4N4-01 4 17841769 17841769 G C NCAPG Missense_Mutation p.G902R 0.31 tolerated(0.26) benign(0.005) TCGA-MN-A4N4-01 4 183635317 183635317 G T TENM3 Nonsense_Mutation p.G767* 0.12 TCGA-MN-A4N4-01 4 186427700 186427700 G A PDLIM3 Nonsense_Mutation p.Q257* 0.11 TCGA-MN-A4N4-01 4 187088164 187088164 C A FAM149A Missense_Mutation p.P403T 0.42 tolerated(0.06) possibly_damaging(0.542) TCGA-MN-A4N4-01 4 20619215 20619215 T G SLIT2 Silent p.G1430G 0.11 TCGA-MN-A4N4-01 4 2242561 2242561 G A HAUS3 Missense_Mutation p.S38L 0.13 tolerated(0.07) benign(0.031) TCGA-MN-A4N4-01 4 25677836 25677836 G T SLC34A2 Missense_Mutation p.R513L 0.54 tolerated(0.06) benign(0.287) TCGA-MN-A4N4-01 4 39449014 39449014 A G KLB Missense_Mutation p.S890G 0.11 deleterious(0.02) benign(0.011) TCGA-MN-A4N4-01 4 4190634 4190634 C A OTOP1 Missense_Mutation p.G579C 0.06 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 4 44177089 44177089 T A KCTD8 Silent p.T380T 0.16 TCGA-MN-A4N4-01 4 47408869 47408869 C A GABRB1 Missense_Mutation p.P336T 0.11 deleterious(0.04) possibly_damaging(0.817) TCGA-MN-A4N4-01 4 47628524 47628524 G A CORIN Missense_Mutation p.T738I 0.15 deleterious(0) possibly_damaging(0.486) TCGA-MN-A4N4-01 4 48491057 48491057 C A SLC10A4 3'UTR 0.26 TCGA-MN-A4N4-01 4 48993518 48993518 G T CWH43 Missense_Mutation p.V95F 0.27 tolerated(0.13) benign(0.045) TCGA-MN-A4N4-01 4 55151573 55151573 T A PDGFRA Missense_Mutation p.S787T 0.38 tolerated(0.07) benign(0.029) TCGA-MN-A4N4-01 4 55151575 55151575 A T PDGFRA Silent p.S787S 0.36 TCGA-MN-A4N4-01 4 57181271 57181271 C A KIAA1211 Silent p.R535R 0.33 TCGA-MN-A4N4-01 4 62775326 62775326 C A LPHN3 Missense_Mutation p.Q578K 0.29 tolerated(0.19) benign(0.007) TCGA-MN-A4N4-01 4 62903554 62903554 C A LPHN3 Missense_Mutation p.R1165S 0.11 tolerated(0.05) probably_damaging(0.961) TCGA-MN-A4N4-01 4 66467419 66467419 C A EPHA5 Missense_Mutation p.V284L 0.36 deleterious(0) possibly_damaging(0.891) TCGA-MN-A4N4-01 4 69337200 69337200 G T TMPRSS11E Missense_Mutation p.A117S 0.36 tolerated(0.05) benign(0.372) TCGA-MN-A4N4-01 4 70713502 70713502 C T SULT1E1 Missense_Mutation p.G169S 0.08 deleterious(0) probably_damaging(0.96) TCGA-MN-A4N4-01 4 70822064 70822064 C T CSN2 3'UTR 0.12 TCGA-MN-A4N4-01 4 71396794 71396794 C A AMTN Missense_Mutation p.F132L 0.33 tolerated(0.15) benign(0.01) TCGA-MN-A4N4-01 4 73957440 73957440 G A ANKRD17 Missense_Mutation p.P1969S 0.37 benign(0.001) TCGA-MN-A4N4-01 4 75066999 75066999 A G MTHFD2L Silent p.K208K 0.31 TCGA-MN-A4N4-01 4 76442141 76442141 G A THAP6 Silent p.L80L 0.21 TCGA-MN-A4N4-01 4 80328714 80328714 T A GK2 Missense_Mutation p.E214V 0.09 deleterious(0.02) benign(0.049) TCGA-MN-A4N4-01 4 81967473 81967473 A T BMP3 Missense_Mutation p.N300Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 4 8583184 8583184 C A GPR78 Missense_Mutation p.R159S 0.60 tolerated(0.41) benign(0.29) TCGA-MN-A4N4-01 4 88048269 88048269 A T AFF1 Missense_Mutation p.K968I 0.41 deleterious(0.01) unknown(0) TCGA-MN-A4N4-01 4 88583880 88583880 C T DMP1 Missense_Mutation p.S317F 0.06 deleterious(0) probably_damaging(0.995) TCGA-MN-A4N4-01 4 89442932 89442932 C A PIGY Silent p.L3L 0.23 TCGA-MN-A4N4-01 4 90874332 90874332 C T MMRN1 Silent p.T1150T 0.07 TCGA-MN-A4N4-01 4 91230736 91230736 G C CCSER1 Missense_Mutation p.G434A 0.18 tolerated(0.13) probably_damaging(0.999) TCGA-MN-A4N4-01 4 94032010 94032010 C A GRID2 Missense_Mutation p.T214N 0.27 deleterious(0.05) probably_damaging(0.959) TCGA-MN-A4N4-01 4 94032021 94032021 G C GRID2 Missense_Mutation p.E218Q 0.26 tolerated(0.17) possibly_damaging(0.883) TCGA-MN-A4N4-01 4 94693401 94693401 C A GRID2 Missense_Mutation p.H926N 0.33 tolerated_low_confidence(0.22) benign(0.306) TCGA-MN-A4N4-01 5 10290834 10290834 T C CMBL Missense_Mutation p.H14R 0.10 tolerated(0.06) benign(0.266) TCGA-MN-A4N4-01 5 108516524 108516524 G T FER Nonsense_Mutation p.E709* 0.06 TCGA-MN-A4N4-01 5 10988344 10988344 T A CTNND2 Silent p.P1074P 0.07 TCGA-MN-A4N4-01 5 114499327 114499327 C A TRIM36 Silent p.L62L 0.08 TCGA-MN-A4N4-01 5 115336130 115336130 G A AQPEP Missense_Mutation p.G506R 0.25 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 5 115351343 115351343 C A AQPEP Silent p.I879I 0.23 TCGA-MN-A4N4-01 5 115783244 115783244 C G SEMA6A Missense_Mutation p.E720Q 0.09 deleterious(0.04) possibly_damaging(0.752) TCGA-MN-A4N4-01 5 118469618 118469618 G A DMXL1 Missense_Mutation p.D667N 0.07 deleterious(0.05) benign(0.24) TCGA-MN-A4N4-01 5 121188124 121188124 G T FTMT Missense_Mutation p.G156W 0.23 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 5 121297701 121297701 G T SRFBP1 5'UTR 0.10 TCGA-MN-A4N4-01 5 127624176 127624176 G C FBN2 Missense_Mutation p.C2237W 0.10 deleterious(0) probably_damaging(0.994) TCGA-MN-A4N4-01 5 128441061 128441061 G A ISOC1 Missense_Mutation p.V205I 0.11 tolerated(0.22) benign(0.085) TCGA-MN-A4N4-01 5 131539826 131539826 C A P4HA2 Missense_Mutation p.R367L 0.19 tolerated(0.1) possibly_damaging(0.53) TCGA-MN-A4N4-01 5 137626362 137626362 G C CDC25C Missense_Mutation p.S277C 0.07 tolerated(0.12) possibly_damaging(0.784) TCGA-MN-A4N4-01 5 137727580 137727580 G T KDM3B Silent p.G753G 0.15 TCGA-MN-A4N4-01 5 13867922 13867922 G A DNAH5 Silent p.F1338F 0.08 TCGA-MN-A4N4-01 5 13923410 13923410 G C DNAH5 Missense_Mutation p.I139M 0.53 benign(0.262) TCGA-MN-A4N4-01 5 139744082 139744082 G T SLC4A9 Missense_Mutation p.C532F 0.31 deleterious(0) probably_damaging(0.982) TCGA-MN-A4N4-01 5 140168035 140168035 G C PCDHA1 Silent p.A720A 0.17 TCGA-MN-A4N4-01 5 140189128 140189128 C A PCDHA4 Missense_Mutation p.L786M 0.30 tolerated_low_confidence(0.11) benign(0.009) TCGA-MN-A4N4-01 5 140222196 140222196 G T PCDHA8 Silent p.G430G 0.22 TCGA-MN-A4N4-01 5 140229932 140229932 G T PCDHA9 Missense_Mutation p.A618S 0.24 tolerated_low_confidence(0.14) benign(0.016) TCGA-MN-A4N4-01 5 140230364 140230364 G A PCDHA9 Missense_Mutation p.E762K 0.07 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-MN-A4N4-01 5 140256600 140256600 G T PCDHA12 Missense_Mutation p.G515C 0.25 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-MN-A4N4-01 5 140346880 140346880 G T PCDHAC2 Missense_Mutation p.V177L 0.26 tolerated(0.08) benign(0.053) TCGA-MN-A4N4-01 5 140432654 140432654 G - PCDHB1 Frame_Shift_Del p.A534Qfs*9 0.19 TCGA-MN-A4N4-01 5 140476694 140476694 C T PCDHB2 Missense_Mutation p.P774S 0.19 tolerated_low_confidence(0.09) benign(0.081) TCGA-MN-A4N4-01 5 140482185 140482186 CG - PCDHB3 Frame_Shift_Del p.R652Lfs*111 0.31 TCGA-MN-A4N4-01 5 140503499 140503499 T C PCDHB4 Missense_Mutation p.V640A 0.21 deleterious_low_confidence(0) benign(0.006) TCGA-MN-A4N4-01 5 140580977 140580977 G A PCDHB11 Missense_Mutation p.E544K 0.10 deleterious_low_confidence(0.01) benign(0.105) TCGA-MN-A4N4-01 5 140581088 140581088 G C PCDHB11 Missense_Mutation p.E581Q 0.06 deleterious_low_confidence(0.04) possibly_damaging(0.635) TCGA-MN-A4N4-01 5 140627114 140627114 C A PCDHB15 Silent p.A656A 0.10 TCGA-MN-A4N4-01 5 140710926 140710926 C A PCDHGA1 Silent p.T225T 0.18 TCGA-MN-A4N4-01 5 140720633 140720633 G T PCDHGA2 Missense_Mutation p.A699S 0.15 tolerated_low_confidence(0.08) benign(0.082) TCGA-MN-A4N4-01 5 140720867 140720867 G T PCDHGA2 Missense_Mutation p.D777Y 0.07 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-MN-A4N4-01 5 140774430 140774430 C A PCDHGA8 Missense_Mutation p.P684T 0.12 deleterious_low_confidence(0.02) benign(0.043) TCGA-MN-A4N4-01 5 140783007 140783007 G T PCDHGA9 Missense_Mutation p.G163V 0.17 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-MN-A4N4-01 5 140869579 140869579 G C PCDHGC5 Missense_Mutation p.G258R 0.17 deleterious(0.01) probably_damaging(1) TCGA-MN-A4N4-01 5 141242793 141242793 C T PCDH1 Intron 0.17 TCGA-MN-A4N4-01 5 141358145 141358145 C T RNF14 Missense_Mutation p.S195L 0.09 deleterious(0.03) benign(0.009) TCGA-MN-A4N4-01 5 14399012 14399012 C G TRIO Missense_Mutation p.Q1483E 0.05 probably_damaging(0.983) TCGA-MN-A4N4-01 5 14462950 14462950 G T TRIO Missense_Mutation p.E1861D 0.08 benign(0.001) TCGA-MN-A4N4-01 5 14472747 14472747 G T TRIO Missense_Mutation p.D1987Y 0.62 benign(0.24) TCGA-MN-A4N4-01 5 146778740 146778740 G A DPYSL3 Missense_Mutation p.P510S 0.07 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 5 147021329 147021329 T A JAKMIP2 Splice_Site p.X409_splice 0.16 TCGA-MN-A4N4-01 5 147051347 147051347 T A JAKMIP2 Missense_Mutation p.K8M 0.11 deleterious(0) probably_damaging(0.995) TCGA-MN-A4N4-01 5 147902826 147902826 C T HTR4 Nonsense_Mutation p.W146* 0.09 TCGA-MN-A4N4-01 5 149460402 149460402 T G CSF1R Missense_Mutation p.T79P 0.16 deleterious(0) probably_damaging(0.984) TCGA-MN-A4N4-01 5 153065884 153065884 C T GRIA1 Nonsense_Mutation p.R387* 0.22 TCGA-MN-A4N4-01 5 157164911 157164911 A G THG1L Missense_Mutation p.D215G 0.13 deleterious(0) benign(0.02) TCGA-MN-A4N4-01 5 167625979 167625979 G A TENM2 Missense_Mutation p.V1008M 0.27 deleterious(0.04) benign(0.048) TCGA-MN-A4N4-01 5 168098328 168098328 G T SLIT3 Silent p.S1334S 0.11 TCGA-MN-A4N4-01 5 168671728 168671728 G T SLIT3 Missense_Mutation p.L108M 0.18 tolerated(0.36) probably_damaging(0.999) TCGA-MN-A4N4-01 5 169472897 169472897 C T DOCK2 Silent p.L1318L 0.07 TCGA-MN-A4N4-01 5 169535261 169535261 C A FOXI1 Silent p.T261T 0.24 TCGA-MN-A4N4-01 5 172396539 172396539 G A RPL26L1 Missense_Mutation p.E145K 0.09 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N4-01 5 17354063 17354063 G T CTD-2139B15.2 RNA 0.70 TCGA-MN-A4N4-01 5 17354393 17354393 C A CTD-2139B15.2 RNA 0.42 TCGA-MN-A4N4-01 5 174869708 174869708 T A DRD1 Missense_Mutation p.E132V 0.27 deleterious(0) probably_damaging(0.976) TCGA-MN-A4N4-01 5 175110326 175110326 C A HRH2 Silent p.L30L 0.13 TCGA-MN-A4N4-01 5 175923620 175923620 C A FAF2 Silent p.I265I 0.06 TCGA-MN-A4N4-01 5 176522652 176522652 G T FGFR4 Silent p.P583P 0.21 TCGA-MN-A4N4-01 5 176710860 176710860 G A NSD1 Missense_Mutation p.E2028K 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-MN-A4N4-01 5 176919548 176919548 C A PDLIM7 Missense_Mutation p.R76L 0.21 deleterious(0.02) benign(0.255) TCGA-MN-A4N4-01 5 176951477 176951477 C A FAM193B Missense_Mutation p.A669S 0.29 tolerated(1) benign(0.007) TCGA-MN-A4N4-01 5 179227540 179227540 G C MGAT4B Missense_Mutation p.F236L 0.12 deleterious(0) possibly_damaging(0.688) TCGA-MN-A4N4-01 5 179252158 179252158 C T SQSTM1 Missense_Mutation p.S229L 0.12 tolerated(0.06) benign(0.043) TCGA-MN-A4N4-01 5 180377516 180377516 C A BTNL8 Missense_Mutation p.T492K 0.08 tolerated(0.74) benign(0.006) TCGA-MN-A4N4-01 5 21752244 21752244 C T CDH12 Missense_Mutation p.E663K 0.08 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 5 224543 224543 C T SDHA Silent p.G73G 0.04 TCGA-MN-A4N4-01 5 23509620 23509620 G T PRDM9 Missense_Mutation p.K37N 0.05 deleterious_low_confidence(0) benign(0.32) TCGA-MN-A4N4-01 5 24509906 24509906 C G CDH10 Missense_Mutation p.R342T 0.45 tolerated(0.16) probably_damaging(0.977) TCGA-MN-A4N4-01 5 31302240 31302240 T A CDH6 Silent p.P278P 0.68 TCGA-MN-A4N4-01 5 33937001 33937001 G T RXFP3 Silent p.L52L 0.04 TCGA-MN-A4N4-01 5 33937002 33937002 G T RXFP3 Missense_Mutation p.G53W 0.04 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-MN-A4N4-01 5 34823250 34823250 C G RAI14 Missense_Mutation p.Q438E 0.04 tolerated(0.07) probably_damaging(0.995) TCGA-MN-A4N4-01 5 35670354 35670354 G A SPEF2 Intron 0.68 TCGA-MN-A4N4-01 5 36037942 36037942 C T UGT3A2 Missense_Mutation p.E418K 0.04 deleterious(0.01) benign(0.12) TCGA-MN-A4N4-01 5 36262117 36262117 T C RANBP3L Missense_Mutation p.S195G 0.09 tolerated(0.31) benign(0.013) TCGA-MN-A4N4-01 5 36608542 36608542 G A SLC1A3 Missense_Mutation p.G6E 0.07 deleterious_low_confidence(0.03) benign(0.006) TCGA-MN-A4N4-01 5 37348642 37348642 C G NUP155 Missense_Mutation p.Q320H 0.07 tolerated(0.49) benign(0.302) TCGA-MN-A4N4-01 5 38407176 38407176 G T EGFLAM Missense_Mutation p.V359F 0.70 deleterious(0.04) benign(0.439) TCGA-MN-A4N4-01 5 38451530 38451530 T C EGFLAM Missense_Mutation p.L894S 0.68 deleterious(0) probably_damaging(0.993) TCGA-MN-A4N4-01 5 38510812 38510812 C G LIFR Missense_Mutation p.D249H 0.63 tolerated(0.1) benign(0.19) TCGA-MN-A4N4-01 5 38953162 38953162 T C RICTOR Missense_Mutation p.N941S 0.06 tolerated(0.32) benign(0.06) TCGA-MN-A4N4-01 5 40852696 40852697 - G CARD6 Frame_Shift_Ins p.A423Gfs*42 0.36 TCGA-MN-A4N4-01 5 42801362 42801362 C A SEPP1 Silent p.S202S 0.66 TCGA-MN-A4N4-01 5 44388738 44388738 A T FGF10 Missense_Mutation p.L16Q 0.59 tolerated(0.24) probably_damaging(0.993) TCGA-MN-A4N4-01 5 5146425 5146425 G A ADAMTS16 Missense_Mutation p.A120T 0.10 deleterious(0.03) probably_damaging(0.911) TCGA-MN-A4N4-01 5 55212886 55212886 G C IL31RA Missense_Mutation p.V745L 0.08 deleterious(0.04) benign(0.185) TCGA-MN-A4N4-01 5 57913636 57913636 G T RAB3C Missense_Mutation p.G64V 0.34 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 5 68524191 68524191 C G MRPS36 Missense_Mutation p.Q91E 0.04 tolerated(0.72) benign(0.021) TCGA-MN-A4N4-01 5 68677881 68677881 A T RAD17 Missense_Mutation p.T180S 0.16 tolerated(0.41) benign(0.004) TCGA-MN-A4N4-01 5 68903026 68903026 T A RP11-848G14.2 RNA 0.10 TCGA-MN-A4N4-01 5 71493644 71493644 C T MAP1B Missense_Mutation p.P1488S 0.23 benign(0.01) TCGA-MN-A4N4-01 5 74988263 74988263 T A POC5 Silent p.T251T 0.31 TCGA-MN-A4N4-01 5 75923290 75923290 A T IQGAP2 Missense_Mutation p.D526V 0.22 tolerated(0.56) benign(0.028) TCGA-MN-A4N4-01 5 76029171 76029171 C A F2R Missense_Mutation p.A374D 0.20 deleterious(0) probably_damaging(0.99) TCGA-MN-A4N4-01 5 80553612 80553612 C A CKMT2 Silent p.I272I 0.16 TCGA-MN-A4N4-01 5 80643701 80643701 G T ACOT12 Missense_Mutation p.S182Y 0.16 tolerated(0.16) benign(0.003) TCGA-MN-A4N4-01 5 82818060 82818060 C T VCAN Missense_Mutation p.P1312L 0.19 deleterious(0) probably_damaging(0.962) TCGA-MN-A4N4-01 5 83360583 83360583 G A EDIL3 Silent p.L296L 0.22 TCGA-MN-A4N4-01 5 840641 840641 C A ZDHHC11 Silent p.L251L 0.07 TCGA-MN-A4N4-01 5 85578559 85578559 T C NBPF22P RNA 0.27 TCGA-MN-A4N4-01 5 90055329 90055329 G C GPR98 Missense_Mutation p.G4015A 0.17 probably_damaging(0.981) TCGA-MN-A4N4-01 5 9054273 9054273 G T SEMA5A Missense_Mutation p.A872D 0.35 deleterious(0.01) probably_damaging(0.924) TCGA-MN-A4N4-01 5 9119232 9119232 C T SEMA5A Nonsense_Mutation p.W601* 0.41 TCGA-MN-A4N4-01 5 9136722 9136722 C A SEMA5A Missense_Mutation p.G498V 0.07 deleterious(0.02) probably_damaging(0.931) TCGA-MN-A4N4-01 5 9197323 9197323 C G SEMA5A Missense_Mutation p.R342P 0.28 deleterious(0.01) probably_damaging(1) TCGA-MN-A4N4-01 5 96086363 96086363 G C CAST Missense_Mutation p.A460P 0.26 deleterious(0.02) benign(0.03) TCGA-MN-A4N4-01 5 99871248 99871248 A C FAM174A Missense_Mutation p.Q5P 0.20 deleterious_low_confidence(0.02) benign(0.001) TCGA-MN-A4N4-01 6 100369120 100369120 C A MCHR2 Missense_Mutation p.S240I 0.16 deleterious(0) benign(0.323) TCGA-MN-A4N4-01 6 10404901 10404901 C T TFAP2A Missense_Mutation p.G202S 0.32 tolerated(0.24) benign(0.23) TCGA-MN-A4N4-01 6 107955605 107955605 G T SOBP Silent p.P519P 0.43 TCGA-MN-A4N4-01 6 112454580 112454580 C A LAMA4 Missense_Mutation p.V1223F 0.35 deleterious(0) benign(0.279) TCGA-MN-A4N4-01 6 129674473 129674473 G T LAMA2 Missense_Mutation p.W1563L 0.42 deleterious(0.02) benign(0.005) TCGA-MN-A4N4-01 6 130497017 130497017 C A SAMD3 Missense_Mutation p.R264I 0.09 deleterious(0.01) benign(0.149) TCGA-MN-A4N4-01 6 131190899 131190899 C A EPB41L2 Missense_Mutation p.G804V 0.20 tolerated(0.1) probably_damaging(0.996) TCGA-MN-A4N4-01 6 132618313 132618313 C A MOXD1 Silent p.T607T 0.42 TCGA-MN-A4N4-01 6 136599710 136599710 C A BCLAF1 Missense_Mutation p.R103S 0.19 tolerated_low_confidence(0.23) unknown(0) TCGA-MN-A4N4-01 6 137479531 137479531 C - IL22RA2 Frame_Shift_Del p.R51Gfs*22 0.26 TCGA-MN-A4N4-01 6 1390608 1390608 G T FOXF2 Missense_Mutation p.Q142H 0.37 deleterious(0.01) probably_damaging(0.979) TCGA-MN-A4N4-01 6 149916239 149916239 G C KATNA1 Missense_Mutation p.S470C 0.07 tolerated(0.06) probably_damaging(0.999) TCGA-MN-A4N4-01 6 160455534 160455534 T G IGF2R Missense_Mutation p.F432C 0.28 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 6 160978566 160978566 C A LPA Missense_Mutation p.G1557W 0.16 deleterious(0.01) probably_damaging(0.947) TCGA-MN-A4N4-01 6 167550839 167550839 T C CCR6 Missense_Mutation p.M374T 0.37 deleterious(0) benign(0.439) TCGA-MN-A4N4-01 6 167570985 167570985 C A GPR31 Missense_Mutation p.R112L 0.12 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N4-01 6 168227253 168227253 C T MLLT4 5'Flank 0.07 TCGA-MN-A4N4-01 6 22294785 22294785 G T PRL Missense_Mutation p.N19K 0.32 deleterious(0.02) possibly_damaging(0.489) TCGA-MN-A4N4-01 6 24134573 24134573 C G NRSN1 Missense_Mutation p.N6K 0.17 tolerated(0.14) benign(0.035) TCGA-MN-A4N4-01 6 24871099 24871099 C A FAM65B Missense_Mutation p.D119Y 0.29 deleterious(0) probably_damaging(0.997) TCGA-MN-A4N4-01 6 25488758 25488758 C G LRRC16A Missense_Mutation p.S337C 0.08 deleterious(0) possibly_damaging(0.548) TCGA-MN-A4N4-01 6 25779518 25779518 G C SLC17A4 3'UTR 0.29 TCGA-MN-A4N4-01 6 25850334 25850334 A T SLC17A3 Missense_Mutation p.D355E 0.26 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 6 26027128 26027128 C - HIST1H4B 3'UTR 0.10 TCGA-MN-A4N4-01 6 26123964 26123964 A T HIST1H2BC Missense_Mutation p.S57T 0.29 deleterious_low_confidence(0.03) benign(0.091) TCGA-MN-A4N4-01 6 26184177 26184177 G T HIST1H2BE Missense_Mutation p.D52Y 0.08 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-MN-A4N4-01 6 26216720 26216720 G C HIST1H2BG Missense_Mutation p.P51R 0.20 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-MN-A4N4-01 6 26234735 26234735 C A HIST1H1D Missense_Mutation p.A143S 0.35 tolerated(0.73) unknown(0) TCGA-MN-A4N4-01 6 26247201 26247201 G A HIST1H4G Missense_Mutation p.S2F 0.14 deleterious_low_confidence(0) benign(0.001) TCGA-MN-A4N4-01 6 26410254 26410254 G A BTN3A1 Missense_Mutation p.A320T 0.05 tolerated(0.11) benign(0.001) TCGA-MN-A4N4-01 6 27101145 27101145 G T HIST1H2AG Missense_Mutation p.G99C 0.18 deleterious_low_confidence(0.05) possibly_damaging(0.815) TCGA-MN-A4N4-01 6 27421013 27421013 C A ZNF184 Missense_Mutation p.V109L 0.18 tolerated(0.3) benign(0) TCGA-MN-A4N4-01 6 27782880 27782880 A G HIST1H2BM Missense_Mutation p.N20S 0.06 tolerated_low_confidence(0.08) benign(0) TCGA-MN-A4N4-01 6 27799282 27799282 C A HIST1H4K Silent p.G8G 0.11 TCGA-MN-A4N4-01 6 27839717 27839717 T A HIST1H3I Missense_Mutation p.Q126L 0.14 deleterious_low_confidence(0) benign(0.014) TCGA-MN-A4N4-01 6 27858295 27858295 C G HIST1H3J Silent p.A92A 0.13 TCGA-MN-A4N4-01 6 28056781 28056781 C G ZNF165 Missense_Mutation p.L331V 0.07 deleterious(0) benign(0.02) TCGA-MN-A4N4-01 6 29274914 29274914 G T OR14J1 Missense_Mutation p.G150W 0.18 deleterious(0.01) probably_damaging(1) TCGA-MN-A4N4-01 6 29627220 29627220 C A MOG Silent p.P71P 0.28 TCGA-MN-A4N4-01 6 30310098 30310098 G A TRIM39 3'UTR 0.14 TCGA-MN-A4N4-01 6 30867118 30867118 A T DDR1 3'UTR 0.32 TCGA-MN-A4N4-01 6 31508135 31508135 C A DDX39B Missense_Mutation p.A59S 0.23 tolerated(0.1) benign(0.113) TCGA-MN-A4N4-01 6 32010099 32010099 C G TNXB Missense_Mutation p.R513T 0.32 deleterious(0) probably_damaging(0.966) TCGA-MN-A4N4-01 6 32021388 32021388 G T TNXB Silent p.T2854T 0.31 TCGA-MN-A4N4-01 6 32088575 32088575 G T ATF6B Missense_Mutation p.L269M 0.04 deleterious(0.04) probably_damaging(0.999) TCGA-MN-A4N4-01 6 32134872 32134872 G T EGFL8 Nonsense_Mutation p.E147* 0.18 TCGA-MN-A4N4-01 6 32147882 32147882 G A RNF5 Missense_Mutation p.E142K 0.06 tolerated(0.1) possibly_damaging(0.715) TCGA-MN-A4N4-01 6 33541968 33541968 C A BAK1 Missense_Mutation p.W125L 0.34 deleterious(0) probably_damaging(0.93) TCGA-MN-A4N4-01 6 34385290 34385290 G T RPS10 Missense_Mutation p.P164H 0.37 deleterious(0.01) unknown(0) TCGA-MN-A4N4-01 6 34389536 34389536 C G RPS10 Missense_Mutation p.R124T 0.05 deleterious(0) benign(0.285) TCGA-MN-A4N4-01 6 35261526 35261526 A T ZNF76 Splice_Site p.X444_splice 0.47 TCGA-MN-A4N4-01 6 35278301 35278301 G A DEF6 Silent p.K101K 0.12 TCGA-MN-A4N4-01 6 38754656 38754656 G T DNAH8 Missense_Mutation p.L620F 0.08 benign(0.261) TCGA-MN-A4N4-01 6 4068873 4068873 C T FAM217A 3'UTR 0.10 TCGA-MN-A4N4-01 6 41743255 41743255 C G FRS3 Missense_Mutation p.R52P 0.22 deleterious(0) probably_damaging(0.958) TCGA-MN-A4N4-01 6 42656060 42656060 G A UBR2 Missense_Mutation p.E1654K 0.04 deleterious(0.03) benign(0.044) TCGA-MN-A4N4-01 6 42902230 42902230 G T CNPY3 Missense_Mutation p.V57L 0.23 tolerated(0.31) benign(0.026) TCGA-MN-A4N4-01 6 43322794 43322794 G C ZNF318 Missense_Mutation p.Q760E 0.23 probably_damaging(0.993) TCGA-MN-A4N4-01 6 43399993 43399993 G T ABCC10 Missense_Mutation p.G92V 0.28 tolerated(0.22) benign(0.038) TCGA-MN-A4N4-01 6 44148732 44148732 G A CAPN11 Missense_Mutation p.D623N 0.26 deleterious(0) probably_damaging(0.994) TCGA-MN-A4N4-01 6 45870993 45870993 C G CLIC5 Splice_Site p.X356_splice 0.20 TCGA-MN-A4N4-01 6 46659556 46659556 A T TDRD6 Missense_Mutation p.T1231S 0.14 tolerated(0.05) benign(0.014) TCGA-MN-A4N4-01 6 47591975 47591975 C A CD2AP 3'UTR 0.16 TCGA-MN-A4N4-01 6 47682216 47682216 C G GPR115 Nonsense_Mutation p.S412* 0.08 TCGA-MN-A4N4-01 6 49802826 49802826 G T CRISP1 3'UTR 0.40 TCGA-MN-A4N4-01 6 49986718 49986718 G C DEFB110 Missense_Mutation p.P59R 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-MN-A4N4-01 6 51824730 51824730 T C PKHD1 Missense_Mutation p.E1949G 0.20 tolerated(0.08) possibly_damaging(0.717) TCGA-MN-A4N4-01 6 51890118 51890118 C T PKHD1 Missense_Mutation p.G1497E 0.25 deleterious(0.03) probably_damaging(0.986) TCGA-MN-A4N4-01 6 51890803 51890803 C G PKHD1 Missense_Mutation p.V1269L 0.12 deleterious(0.01) possibly_damaging(0.861) TCGA-MN-A4N4-01 6 51935861 51935861 T A PKHD1 Missense_Mutation p.I204F 0.22 deleterious(0.03) benign(0.002) TCGA-MN-A4N4-01 6 52101940 52101940 G T IL17F Missense_Mutation p.P94H 0.24 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 6 54791227 54791227 A T FAM83B Missense_Mutation p.E168V 0.14 deleterious(0) possibly_damaging(0.868) TCGA-MN-A4N4-01 6 54804697 54804697 G T FAM83B Missense_Mutation p.V310L 0.12 tolerated(0.74) benign(0.002) TCGA-MN-A4N4-01 6 54805281 54805281 T C FAM83B Silent p.H504H 0.08 TCGA-MN-A4N4-01 6 55300297 55300297 T G HMGCLL1 3'UTR 0.30 TCGA-MN-A4N4-01 6 56483219 56483219 G T DST Intron 0.23 TCGA-MN-A4N4-01 6 64421811 64421811 C T PHF3 Missense_Mutation p.L1443F 0.36 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 6 70071376 70071376 G T BAI3 Missense_Mutation p.G1404V 0.16 tolerated(0.58) possibly_damaging(0.56) TCGA-MN-A4N4-01 6 70639431 70639431 C G COL19A1 Missense_Mutation p.R169G 0.40 deleterious(0) unknown(0) TCGA-MN-A4N4-01 6 7230732 7230732 G T RREB1 Silent p.A800A 0.17 TCGA-MN-A4N4-01 6 7231430 7231430 C T RREB1 Missense_Mutation p.S1033L 0.13 tolerated(0.24) benign(0.381) TCGA-MN-A4N4-01 6 7574355 7574355 C T DSP Missense_Mutation p.L723F 0.06 probably_damaging(0.997) TCGA-MN-A4N4-01 6 75855921 75855921 C A COL12A1 Missense_Mutation p.G1486V 0.25 possibly_damaging(0.904) TCGA-MN-A4N4-01 6 76425176 76425176 G A SENP6 Missense_Mutation p.E1069K 0.09 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N4-01 6 76751662 76751662 C T IMPG1 Silent p.Q83Q 0.27 TCGA-MN-A4N4-01 6 8419813 8419813 C A SLC35B3 Missense_Mutation p.M260I 0.34 tolerated(0.33) benign(0.088) TCGA-MN-A4N4-01 6 86176988 86176988 C T NT5E Missense_Mutation p.L184F 0.22 deleterious(0) possibly_damaging(0.737) TCGA-MN-A4N4-01 6 88140771 88140771 G A C6ORF165 Missense_Mutation p.D394N 0.36 deleterious(0.01) probably_damaging(0.932) TCGA-MN-A4N4-01 6 93967191 93967191 C A EPHA7 Missense_Mutation p.A721S 0.28 tolerated(1) benign(0.008) TCGA-MN-A4N4-01 6 94120376 94120376 G T EPHA7 Silent p.S225S 0.39 TCGA-MN-A4N4-01 6 97246934 97246934 C A GPR63 Missense_Mutation p.R225L 0.08 deleterious(0.05) possibly_damaging(0.866) TCGA-MN-A4N4-01 6 97679330 97679330 G A MMS22L Missense_Mutation p.P501S 0.21 tolerated(0.4) benign(0.306) TCGA-MN-A4N4-01 7 100421853 100421853 C A EPHB4 Missense_Mutation p.W32L 0.13 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 7 100676818 100676818 C A MUC17 Silent p.T707T 0.05 TCGA-MN-A4N4-01 7 100681737 100681737 C T MUC17 Missense_Mutation p.T2347I 0.35 unknown(0) TCGA-MN-A4N4-01 7 100839311 100839311 G T MOGAT3 Silent p.L314L 0.17 TCGA-MN-A4N4-01 7 100849618 100849618 C A PLOD3 Missense_Mutation p.G721W 0.12 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 7 100860066 100860066 C T PLOD3 Silent p.E37E 0.28 TCGA-MN-A4N4-01 7 102912241 102912241 C A DPY19L2P2 RNA 0.10 TCGA-MN-A4N4-01 7 103180698 103180698 G A RELN Silent p.R2292R 0.38 TCGA-MN-A4N4-01 7 107559470 107559470 G T DLD Missense_Mutation p.V464L 0.31 deleterious(0.03) benign(0.021) TCGA-MN-A4N4-01 7 107692542 107692542 C A LAMB4 Missense_Mutation p.D1306Y 0.11 deleterious(0.01) probably_damaging(0.943) TCGA-MN-A4N4-01 7 111927113 111927113 G T ZNF277 Missense_Mutation p.V93F 0.37 deleterious(0) probably_damaging(0.931) TCGA-MN-A4N4-01 7 112724774 112724774 C A GPR85 Translation_Start_Site p.M1? 0.23 deleterious_low_confidence(0) benign(0) TCGA-MN-A4N4-01 7 115892431 115892431 C T TES Silent p.F326F 0.08 TCGA-MN-A4N4-01 7 121608082 121608082 G A PTPRZ1 Missense_Mutation p.E68K 0.22 deleterious(0) probably_damaging(0.996) TCGA-MN-A4N4-01 7 123105039 123105039 C A IQUB Nonsense_Mutation p.E536* 0.12 TCGA-MN-A4N4-01 7 123508818 123508818 G T HYAL4 Missense_Mutation p.R164I 0.08 deleterious(0) probably_damaging(0.977) TCGA-MN-A4N4-01 7 123594064 123594064 G A SPAM1 Nonsense_Mutation p.W147* 0.10 TCGA-MN-A4N4-01 7 126086157 126086157 C A GRM8 Intron 0.27 TCGA-MN-A4N4-01 7 126542595 126542595 C A GRM8 Splice_Site p.X386_splice 0.15 TCGA-MN-A4N4-01 7 128494892 128494892 C A FLNC Missense_Mutation p.P2354H 0.15 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 7 128494959 128494959 G A FLNC Silent p.Q2376Q 0.10 TCGA-MN-A4N4-01 7 128843243 128843243 G T SMO Missense_Mutation p.R117L 0.62 tolerated(0.06) possibly_damaging(0.597) TCGA-MN-A4N4-01 7 129658511 129658511 G A ZC3HC1 Missense_Mutation p.S501L 0.14 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-MN-A4N4-01 7 130027674 130027674 G T CPA1 Missense_Mutation p.S361I 0.19 deleterious(0) probably_damaging(0.994) TCGA-MN-A4N4-01 7 135047450 135047450 A G CNOT4 3'UTR 0.39 TCGA-MN-A4N4-01 7 135099131 135099131 G C CNOT4 Silent p.L170L 0.05 TCGA-MN-A4N4-01 7 136700011 136700011 C A CHRM2 Silent p.V133V 0.16 TCGA-MN-A4N4-01 7 137773393 137773393 C A AKR1D1 Missense_Mutation p.T47K 0.20 deleterious(0) benign(0.002) TCGA-MN-A4N4-01 7 138833076 138833076 C T TTC26 Missense_Mutation p.L224F 0.12 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 7 141708481 141708481 C A MGAM Nonsense_Mutation p.C101* 0.31 TCGA-MN-A4N4-01 7 142131834 142131834 C A TRBV5-6 Missense_Mutation p.G15V 0.14 tolerated(0.06) benign(0.086) TCGA-MN-A4N4-01 7 142131835 142131835 C A TRBV5-6 Nonsense_Mutation p.G15* 0.14 TCGA-MN-A4N4-01 7 142168638 142168638 G T TRBV5-4 Missense_Mutation p.H29N 0.19 tolerated(0.09) benign(0.073) TCGA-MN-A4N4-01 7 142168650 142168650 G T TRBV5-4 Missense_Mutation p.Q25K 0.30 deleterious(0) possibly_damaging(0.779) TCGA-MN-A4N4-01 7 142176554 142176554 C A TRBV7-4 Missense_Mutation p.R41M 0.13 deleterious(0.02) probably_damaging(0.953) TCGA-MN-A4N4-01 7 142458452 142458452 C T PRSS1 Silent p.N29N 0.16 TCGA-MN-A4N4-01 7 142459849 142459849 C A PRSS1 Missense_Mutation p.S142Y 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-MN-A4N4-01 7 142561077 142561077 C T EPHB6 Missense_Mutation p.A31V 0.18 deleterious(0.02) probably_damaging(0.985) TCGA-MN-A4N4-01 7 142561806 142561806 G A EPHB6 Missense_Mutation p.G83D 0.10 tolerated(0.24) probably_damaging(0.971) TCGA-MN-A4N4-01 7 142562357 142562357 G A EPHB6 Missense_Mutation p.E267K 0.34 tolerated(0.11) benign(0.016) TCGA-MN-A4N4-01 7 142575447 142575447 G A TRPV6 Silent p.A102A 0.32 TCGA-MN-A4N4-01 7 142983285 142983285 G A TMEM139 Missense_Mutation p.G79S 0.35 tolerated(0.67) benign(0.271) TCGA-MN-A4N4-01 7 143421523 143421523 C A FAM115C Missense_Mutation p.D746E 0.23 tolerated(0.29) benign(0.047) TCGA-MN-A4N4-01 7 143807592 143807592 G A OR2A2 Missense_Mutation p.R306K 0.32 tolerated(1) benign(0.008) TCGA-MN-A4N4-01 7 148544312 148544312 T A EZH2 Nonsense_Mutation p.R27* 0.18 TCGA-MN-A4N4-01 7 148702342 148702342 C A PDIA4 Silent p.G471G 0.15 TCGA-MN-A4N4-01 7 148947854 148947854 A C ZNF212 Missense_Mutation p.Y166S 0.26 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 7 149174746 149174746 C A ZNF746 Missense_Mutation p.W207C 0.25 tolerated(0.08) probably_damaging(0.993) TCGA-MN-A4N4-01 7 149486408 149486408 G T SSPO RNA 0.18 TCGA-MN-A4N4-01 7 149517829 149517829 A T SSPO RNA 0.18 TCGA-MN-A4N4-01 7 150698952 150698952 A T NOS3 Nonsense_Mutation p.K516* 0.31 TCGA-MN-A4N4-01 7 150768924 150768924 G A SLC4A2 Silent p.S780S 0.35 TCGA-MN-A4N4-01 7 151873492 151873492 G A KMT2C Nonsense_Mutation p.Q3016* 0.11 TCGA-MN-A4N4-01 7 151878315 151878315 T C KMT2C Silent p.P2210P 0.22 TCGA-MN-A4N4-01 7 15601444 15601444 A T AGMO Missense_Mutation p.D9E 0.33 tolerated(0.6) benign(0) TCGA-MN-A4N4-01 7 15601562 15601562 G T AGMO 5'UTR 0.33 TCGA-MN-A4N4-01 7 15601599 15601599 C A AGMO 5'UTR 0.24 TCGA-MN-A4N4-01 7 158456929 158456929 C G NCAPG2 Missense_Mutation p.E588Q 0.17 deleterious(0.03) possibly_damaging(0.556) TCGA-MN-A4N4-01 7 1586709 1586709 T A TMEM184A Missense_Mutation p.Y374F 0.37 deleterious(0) possibly_damaging(0.867) TCGA-MN-A4N4-01 7 16341047 16341047 C A ISPD Missense_Mutation p.K278N 0.22 deleterious(0) probably_damaging(0.978) TCGA-MN-A4N4-01 7 16649291 16649291 G A ANKMY2 Silent p.L282L 0.19 TCGA-MN-A4N4-01 7 20180730 20180730 C A MACC1 Nonsense_Mutation p.G800* 0.32 TCGA-MN-A4N4-01 7 21813507 21813507 G A DNAH11 Missense_Mutation p.E3083K 0.33 possibly_damaging(0.575) TCGA-MN-A4N4-01 7 21940666 21940666 C G DNAH11 Missense_Mutation p.R4456G 0.27 possibly_damaging(0.474) TCGA-MN-A4N4-01 7 23750000 23750000 G T STK31 Intron 0.46 TCGA-MN-A4N4-01 7 27135347 27135347 C A HOXA1 Missense_Mutation p.G62V 0.27 tolerated(0.13) benign(0.003) TCGA-MN-A4N4-01 7 27150356 27150356 C G HOXA3 5'UTR 0.22 TCGA-MN-A4N4-01 7 27832703 27832703 G T TAX1BP1 Nonsense_Mutation p.E428* 0.21 TCGA-MN-A4N4-01 7 30890106 30890106 C T FAM188B Silent p.C494C 0.12 TCGA-MN-A4N4-01 7 30951862 30951862 C G AQP1 Nonsense_Mutation p.S113* 0.06 TCGA-MN-A4N4-01 7 34977696 34977696 C T DPY19L1 Missense_Mutation p.R594Q 0.16 deleterious(0) probably_damaging(0.997) TCGA-MN-A4N4-01 7 37780354 37780354 G T GPR141 Missense_Mutation p.C120F 0.06 deleterious(0.05) benign(0.005) TCGA-MN-A4N4-01 7 37890307 37890307 G T NME8 Silent p.L56L 0.22 TCGA-MN-A4N4-01 7 37949246 37949246 C T SFRP4 Nonsense_Mutation p.W276* 0.05 TCGA-MN-A4N4-01 7 43590133 43590133 G A HECW1 Nonsense_Mutation p.W1446* 0.10 TCGA-MN-A4N4-01 7 44148723 44148723 G T AEBP1 Missense_Mutation p.D346Y 0.29 deleterious_low_confidence(0) benign(0.006) TCGA-MN-A4N4-01 7 44280317 44280317 C A CAMK2B Missense_Mutation p.R312L 0.26 deleterious_low_confidence(0) benign(0.352) TCGA-MN-A4N4-01 7 47947761 47947761 G T PKD1L1 Missense_Mutation p.H439N 0.22 tolerated(0.43) benign(0.07) TCGA-MN-A4N4-01 7 49815505 49815505 G T VWC2 Missense_Mutation p.E158D 0.23 tolerated(0.3) probably_damaging(0.978) TCGA-MN-A4N4-01 7 49951728 49951728 T G VWC2 Missense_Mutation p.W309G 0.11 deleterious(0) probably_damaging(0.994) TCGA-MN-A4N4-01 7 53104149 53104149 C T POM121L12 Missense_Mutation p.S262F 0.18 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-MN-A4N4-01 7 55750190 55750190 C A RNU6-389P 5'Flank 0.36 TCGA-MN-A4N4-01 7 57188312 57188312 C G ZNF479 Silent p.T270T 0.23 TCGA-MN-A4N4-01 7 69064861 69064861 G A AUTS2 Silent p.R74R 0.15 TCGA-MN-A4N4-01 7 71571150 71571150 C G CALN1 Missense_Mutation p.R125P 0.38 deleterious(0) possibly_damaging(0.78) TCGA-MN-A4N4-01 7 71571192 71571192 C A CALN1 Missense_Mutation p.G111V 0.22 deleterious(0) possibly_damaging(0.808) TCGA-MN-A4N4-01 7 73459565 73459565 C T ELN Silent p.P161P 0.14 TCGA-MN-A4N4-01 7 73954274 73954274 G T GTF2IRD1 Missense_Mutation p.G564C 0.24 deleterious(0.01) probably_damaging(0.921) TCGA-MN-A4N4-01 7 751135 751135 G A PRKAR1B Missense_Mutation p.S3F 0.08 deleterious_low_confidence(0) benign(0.067) TCGA-MN-A4N4-01 7 75174063 75174063 T A HIP1 Missense_Mutation p.K899I 0.13 deleterious(0) probably_damaging(0.909) TCGA-MN-A4N4-01 7 75174065 75174065 C A HIP1 Silent p.G898G 0.12 TCGA-MN-A4N4-01 7 75174401 75174401 C A HIP1 Missense_Mutation p.G882V 0.19 deleterious(0) probably_damaging(0.99) TCGA-MN-A4N4-01 7 82584492 82584492 T C PCLO Missense_Mutation p.H1926R 0.14 unknown(0) TCGA-MN-A4N4-01 7 82784736 82784736 T C PCLO Silent p.P407P 0.18 TCGA-MN-A4N4-01 7 82785155 82785155 C A PCLO Missense_Mutation p.D268Y 0.08 unknown(0) TCGA-MN-A4N4-01 7 83031961 83031961 G T SEMA3E Missense_Mutation p.P377Q 0.21 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 7 84628776 84628776 G A SEMA3D Missense_Mutation p.P772S 0.07 deleterious(0) benign(0) TCGA-MN-A4N4-01 7 91732067 91732067 G C AKAP9 Missense_Mutation p.E3753Q 0.13 probably_damaging(0.999) TCGA-MN-A4N4-01 7 92764428 92764428 T A SAMD9L Missense_Mutation p.E286V 0.16 deleterious(0.03) benign(0.078) TCGA-MN-A4N4-01 7 94041939 94041939 C A COL1A2 Missense_Mutation p.A483D 0.24 unknown(0) TCGA-MN-A4N4-01 7 94043576 94043576 C T COL1A2 Missense_Mutation p.P570S 0.26 unknown(0) TCGA-MN-A4N4-01 7 95457405 95457405 G T DYNC1I1 Missense_Mutation p.Q134H 0.36 tolerated(0.06) probably_damaging(0.986) TCGA-MN-A4N4-01 7 96747071 96747071 G T ACN9 Missense_Mutation p.L12F 0.28 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N4-01 7 99258208 99258208 G T CYP3A5 Missense_Mutation p.L314I 0.08 tolerated(0.08) possibly_damaging(0.872) TCGA-MN-A4N4-01 7 99621109 99621109 A T ZKSCAN1 5'UTR 0.28 TCGA-MN-A4N4-01 8 100974952 100974952 C A RGS22 Missense_Mutation p.M1251I 0.38 tolerated(0.12) benign(0.009) TCGA-MN-A4N4-01 8 103358521 103358521 C T UBR5 Missense_Mutation p.D227N 0.06 deleterious(0) probably_damaging(0.981) TCGA-MN-A4N4-01 8 10470501 10470501 C G RP1L1 Missense_Mutation p.W369C 0.34 possibly_damaging(0.488) TCGA-MN-A4N4-01 8 10470502 10470502 C A RP1L1 Missense_Mutation p.W369L 0.35 benign(0.189) TCGA-MN-A4N4-01 8 104922381 104922381 G A RIMS2 Nonsense_Mutation p.W548* 0.26 TCGA-MN-A4N4-01 8 106814290 106814290 T A ZFPM2 Missense_Mutation p.D660E 0.36 tolerated(1) benign(0.036) TCGA-MN-A4N4-01 8 10755644 10755644 C A XKR6 Missense_Mutation p.G582W 0.28 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 8 110100134 110100134 C G TRHR Missense_Mutation p.I131M 0.07 tolerated(0.73) possibly_damaging(0.531) TCGA-MN-A4N4-01 8 110457385 110457385 G T PKHD1L1 Missense_Mutation p.V1763L 0.23 tolerated(0.05) benign(0.065) TCGA-MN-A4N4-01 8 110488847 110488847 G T PKHD1L1 Missense_Mutation p.K2956N 0.25 tolerated(0.21) benign(0.011) TCGA-MN-A4N4-01 8 11157544 11157544 C G MTMR9 Missense_Mutation p.L102V 0.27 tolerated(0.18) benign(0.094) TCGA-MN-A4N4-01 8 113259300 113259300 G A CSMD3 Missense_Mutation p.R3391C 0.23 deleterious(0) probably_damaging(0.99) TCGA-MN-A4N4-01 8 113308102 113308102 T A CSMD3 Missense_Mutation p.Q2858H 0.35 deleterious(0.03) probably_damaging(0.981) TCGA-MN-A4N4-01 8 114031350 114031350 G A CSMD3 Missense_Mutation p.H326Y 0.22 tolerated(0.27) benign(0.186) TCGA-MN-A4N4-01 8 118147563 118147563 C G SLC30A8 5'Flank 0.15 TCGA-MN-A4N4-01 8 122629386 122629386 C G HAS2 Missense_Mutation p.E230Q 0.16 deleterious(0.05) benign(0.14) TCGA-MN-A4N4-01 8 125565642 125565642 G T MTSS1 Missense_Mutation p.T620N 0.24 deleterious(0) probably_damaging(0.997) TCGA-MN-A4N4-01 8 131138201 131138201 C A ASAP1 Splice_Site p.X505_splice 0.21 TCGA-MN-A4N4-01 8 131916260 131916260 C G ADCY8 Missense_Mutation p.D557H 0.14 deleterious(0) probably_damaging(0.989) TCGA-MN-A4N4-01 8 139144989 139144989 G A FAM135B Silent p.A1356A 0.05 TCGA-MN-A4N4-01 8 139164562 139164562 C T FAM135B Missense_Mutation p.R719Q 0.07 tolerated(0.1) benign(0.025) TCGA-MN-A4N4-01 8 13947982 13947982 C G SGCZ Missense_Mutation p.Q303H 0.06 tolerated(0.26) benign(0.018) TCGA-MN-A4N4-01 8 139601504 139601504 C A COL22A1 Missense_Mutation p.G1625C 0.26 unknown(0) TCGA-MN-A4N4-01 8 139820032 139820032 G T COL22A1 Silent p.P491P 0.21 TCGA-MN-A4N4-01 8 142506508 142506508 G T MROH5 Silent p.T23T 0.16 TCGA-MN-A4N4-01 8 143998477 143998477 C T CYP11B2 Silent p.L131L 0.29 TCGA-MN-A4N4-01 8 144811493 144811493 C A FAM83H Missense_Mutation p.V150L 0.17 deleterious(0) probably_damaging(0.979) TCGA-MN-A4N4-01 8 145101532 145101532 C T SPATC1 Missense_Mutation p.S484F 0.11 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N4-01 8 16921683 16921683 G C MICU3 Missense_Mutation p.E158Q 0.35 deleterious(0.04) benign(0.007) TCGA-MN-A4N4-01 8 20004792 20004792 G T SLC18A1 Missense_Mutation p.P481T 0.44 deleterious(0) probably_damaging(0.99) TCGA-MN-A4N4-01 8 22426700 22426700 C A SORBS3 Missense_Mutation p.P449T 0.08 deleterious(0.01) probably_damaging(0.974) TCGA-MN-A4N4-01 8 23302001 23302001 G A ENTPD4 Silent p.L177L 0.30 TCGA-MN-A4N4-01 8 24357726 24357726 A T ADAM7 Missense_Mutation p.E653D 0.12 deleterious(0.04) benign(0.037) TCGA-MN-A4N4-01 8 25280740 25280740 C G GNRH1 Missense_Mutation p.R36T 0.09 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 8 2886902 2886902 C G CSMD1 Missense_Mutation p.R2598S 0.17 possibly_damaging(0.824) TCGA-MN-A4N4-01 8 28976417 28976417 C A KIF13B Nonsense_Mutation p.E1210* 0.25 TCGA-MN-A4N4-01 8 35544182 35544182 C G UNC5D Missense_Mutation p.L347V 0.36 tolerated(0.48) benign(0.004) TCGA-MN-A4N4-01 8 35606108 35606108 G T UNC5D Missense_Mutation p.M610I 0.26 tolerated(0.19) benign(0.002) TCGA-MN-A4N4-01 8 42012422 42012422 G A AP3M2 Missense_Mutation p.E73K 0.12 deleterious(0) probably_damaging(0.996) TCGA-MN-A4N4-01 8 42040260 42040260 G A PLAT Silent p.G260G 0.05 TCGA-MN-A4N4-01 8 42206594 42206594 C T POLB Missense_Mutation p.R83C 0.12 deleterious(0) possibly_damaging(0.71) TCGA-MN-A4N4-01 8 43171081 43171081 G - POTEA RNA 0.12 TCGA-MN-A4N4-01 8 51617300 51617300 A G SNTG1 Silent p.V393V 0.31 TCGA-MN-A4N4-01 8 52322097 52322097 G T PXDNL Missense_Mutation p.S696Y 0.09 deleterious(0) probably_damaging(0.99) TCGA-MN-A4N4-01 8 55542116 55542116 C - RP1 Frame_Shift_Del p.P1892Lfs*5 0.14 TCGA-MN-A4N4-01 8 67488256 67488256 A G MYBL1 Missense_Mutation p.F486L 0.33 deleterious(0) probably_damaging(0.92) TCGA-MN-A4N4-01 8 67579089 67579089 C A VCPIP1 Silent p.G35G 0.11 TCGA-MN-A4N4-01 8 68102923 68102923 G T CSPP1 Missense_Mutation p.V1082F 0.22 tolerated(0.26) benign(0.078) TCGA-MN-A4N4-01 8 68170321 68170321 C A ARFGEF1 Nonsense_Mutation p.G814* 0.25 TCGA-MN-A4N4-01 8 68956723 68956723 C T PREX2 Missense_Mutation p.R281W 0.23 deleterious(0.01) probably_damaging(0.993) TCGA-MN-A4N4-01 8 68956724 68956724 G A PREX2 Missense_Mutation p.R281Q 0.24 tolerated(0.1) probably_damaging(0.978) TCGA-MN-A4N4-01 8 69017513 69017513 A T PREX2 Intron 0.22 TCGA-MN-A4N4-01 8 70536260 70536260 G C SULF1 Missense_Mutation p.E560Q 0.31 tolerated(0.6) benign(0.238) TCGA-MN-A4N4-01 8 72128978 72128978 G T EYA1 Missense_Mutation p.R437S 0.23 deleterious(0) possibly_damaging(0.753) TCGA-MN-A4N4-01 8 72754697 72754697 C A MSC 3'UTR 0.26 TCGA-MN-A4N4-01 8 72754698 72754698 C A MSC 3'UTR 0.26 TCGA-MN-A4N4-01 8 72935284 72935284 C A TRPA1 Nonsense_Mutation p.E1073* 0.24 TCGA-MN-A4N4-01 8 72973926 72973926 G C TRPA1 Missense_Mutation p.S293W 0.29 deleterious(0) probably_damaging(0.965) TCGA-MN-A4N4-01 8 73849188 73849188 A T KCNB2 Missense_Mutation p.Q533L 0.21 deleterious_low_confidence(0.03) probably_damaging(0.925) TCGA-MN-A4N4-01 8 77616858 77616858 C T ZFHX4 Nonsense_Mutation p.Q179* 0.30 TCGA-MN-A4N4-01 8 77618304 77618304 G T ZFHX4 Missense_Mutation p.A661S 0.29 possibly_damaging(0.567) TCGA-MN-A4N4-01 8 77618493 77618493 C T ZFHX4 Silent p.L724L 0.32 TCGA-MN-A4N4-01 8 77767249 77767249 C A ZFHX4 Missense_Mutation p.H2698N 0.34 probably_damaging(0.946) TCGA-MN-A4N4-01 8 77767250 77767250 A C ZFHX4 Missense_Mutation p.H2698P 0.34 probably_damaging(0.984) TCGA-MN-A4N4-01 8 80553642 80553642 G T STMN2 Missense_Mutation p.A49S 0.37 tolerated(0.13) benign(0.084) TCGA-MN-A4N4-01 8 82627319 82627319 C A ZFAND1 Missense_Mutation p.D57Y 0.06 deleterious(0.01) possibly_damaging(0.781) TCGA-MN-A4N4-01 8 87638250 87638250 A G CNGB3 Silent p.D513D 0.09 TCGA-MN-A4N4-01 8 95690554 95690554 C T ESRP1 Missense_Mutation p.P592L 0.22 deleterious(0.05) probably_damaging(1) TCGA-MN-A4N4-01 8 99168552 99168552 C T POP1 Nonsense_Mutation p.Q778* 0.17 TCGA-MN-A4N4-01 9 101824377 101824377 T A COL15A1 Nonsense_Mutation p.L1176* 0.05 TCGA-MN-A4N4-01 9 104071593 104071593 A T LPPR1 Silent p.P162P 0.16 TCGA-MN-A4N4-01 9 107266817 107266817 A G OR13F1 Missense_Mutation p.I92V 0.35 deleterious(0.05) benign(0.173) TCGA-MN-A4N4-01 9 107331787 107331787 G C OR13C8 Missense_Mutation p.M113I 0.34 tolerated(0.13) benign(0.001) TCGA-MN-A4N4-01 9 107591246 107591246 C G ABCA1 Missense_Mutation p.S689T 0.12 deleterious(0.04) probably_damaging(0.992) TCGA-MN-A4N4-01 9 109687314 109687314 C T ZNF462 Missense_Mutation p.S374F 0.20 possibly_damaging(0.485) TCGA-MN-A4N4-01 9 109688841 109688841 G T ZNF462 Missense_Mutation p.S883I 0.28 probably_damaging(0.996) TCGA-MN-A4N4-01 9 113170810 113170810 C A SVEP1 Missense_Mutation p.G2357V 0.16 probably_damaging(1) TCGA-MN-A4N4-01 9 115422298 115422298 C T KIAA1958 Silent p.V700V 0.09 TCGA-MN-A4N4-01 9 117002738 117002738 C T COL27A1 Missense_Mutation p.P936S 0.34 unknown(0) TCGA-MN-A4N4-01 9 123202072 123202072 T C CDK5RAP2 Silent p.T1109T 0.19 TCGA-MN-A4N4-01 9 124936801 124936801 C A MORN5 Missense_Mutation p.P112T 0.44 deleterious(0) probably_damaging(0.978) TCGA-MN-A4N4-01 9 125140252 125140252 G T PTGS1 Missense_Mutation p.D57Y 0.27 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 9 125512887 125512887 G T OR1L6 Missense_Mutation p.G254V 0.11 deleterious(0.01) probably_damaging(1) TCGA-MN-A4N4-01 9 126129537 126129537 G C CRB2 Missense_Mutation p.D281H 0.18 deleterious(0.02) unknown(0) TCGA-MN-A4N4-01 9 130206496 130206496 G C ZNF79 Missense_Mutation p.E173Q 0.36 tolerated(0.17) benign(0.036) TCGA-MN-A4N4-01 9 135276915 135276915 C A TTF1 Missense_Mutation p.G432C 0.18 tolerated(0.07) benign(0.001) TCGA-MN-A4N4-01 9 135942502 135942502 G T CEL Missense_Mutation p.G272C 0.33 deleterious(0) benign(0.304) TCGA-MN-A4N4-01 9 137005059 137005059 G T WDR5 Silent p.S20S 0.18 TCGA-MN-A4N4-01 9 137622106 137622106 G T COL5A1 Missense_Mutation p.A317S 0.32 possibly_damaging(0.449) TCGA-MN-A4N4-01 9 138590927 138590927 C A SOHLH1 Silent p.R37R 0.27 TCGA-MN-A4N4-01 9 139090631 139090631 C A LHX3 Missense_Mutation p.R219S 0.29 deleterious(0) possibly_damaging(0.861) TCGA-MN-A4N4-01 9 139313653 139313653 G A PMPCA Intron 0.16 TCGA-MN-A4N4-01 9 139887515 139887515 G A C9orf142 Missense_Mutation p.E81K 0.17 tolerated(0.17) benign(0.02) TCGA-MN-A4N4-01 9 140442061 140442061 C A PNPLA7 Silent p.T27T 0.36 TCGA-MN-A4N4-01 9 140509144 140509144 C T ARRDC1 Missense_Mutation p.S310F 0.06 deleterious(0) probably_damaging(0.966) TCGA-MN-A4N4-01 9 140777443 140777443 C G CACNA1B Intron 0.11 TCGA-MN-A4N4-01 9 140777444 140777444 C A CACNA1B Intron 0.11 TCGA-MN-A4N4-01 9 14842359 14842359 G A FREM1 Missense_Mutation p.P565S 0.32 tolerated(0.08) possibly_damaging(0.664) TCGA-MN-A4N4-01 9 172139 172139 C A CBWD1 Missense_Mutation p.M124I 0.04 deleterious(0) benign(0.362) TCGA-MN-A4N4-01 9 18770771 18770771 T A ADAMTSL1 Missense_Mutation p.W797R 0.38 deleterious(0) probably_damaging(0.987) TCGA-MN-A4N4-01 9 20414142 20414142 C T MLLT3 Silent p.K234K 0.22 TCGA-MN-A4N4-01 9 20948277 20948277 G A FOCAD Missense_Mutation p.G1228D 0.38 deleterious(0) probably_damaging(0.971) TCGA-MN-A4N4-01 9 32632132 32632132 C T TAF1L Missense_Mutation p.R1149Q 0.47 tolerated(1) benign(0) TCGA-MN-A4N4-01 9 33166815 33166815 G A B4GALT1 Missense_Mutation p.P118L 0.29 tolerated(0.12) benign(0.002) TCGA-MN-A4N4-01 9 34256133 34256133 C T KIF24 Missense_Mutation p.E1158K 0.28 tolerated(0.12) benign(0.004) TCGA-MN-A4N4-01 9 35068309 35068309 G A VCP Missense_Mutation p.P23L 0.16 tolerated(0.06) benign(0.01) TCGA-MN-A4N4-01 9 35403857 35403857 G T UNC13B Missense_Mutation p.D1535Y 0.19 deleterious(0) possibly_damaging(0.466) TCGA-MN-A4N4-01 9 35869979 35869979 G A OR13J1 Silent p.L140L 0.26 TCGA-MN-A4N4-01 9 36147844 36147844 C A GLIPR2 Silent p.G25G 0.30 TCGA-MN-A4N4-01 9 5923224 5923224 C T KIAA2026 Silent p.K924K 0.05 TCGA-MN-A4N4-01 9 6605203 6605203 C G GLDC Missense_Mutation p.L263F 0.44 deleterious(0.01) probably_damaging(0.971) TCGA-MN-A4N4-01 9 72746455 72746455 C G MAMDC2 Missense_Mutation p.F307L 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-MN-A4N4-01 9 73151529 73151529 T G TRPM3 Silent p.S1488S 0.15 TCGA-MN-A4N4-01 9 77415180 77415180 G T TRPM6 Missense_Mutation p.S743Y 0.35 deleterious(0) probably_damaging(0.945) TCGA-MN-A4N4-01 9 77418751 77418751 G C TRPM6 Missense_Mutation p.H564D 0.27 deleterious(0.03) probably_damaging(0.996) TCGA-MN-A4N4-01 9 78722224 78722224 G C PCSK5 Missense_Mutation p.A389P 0.21 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 9 79118156 79118156 G T GCNT1 Missense_Mutation p.A287S 0.28 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 9 79320107 79320107 G T PRUNE2 Silent p.I2361I 0.35 TCGA-MN-A4N4-01 9 82187669 82187669 G T TLE4 5'UTR 0.29 TCGA-MN-A4N4-01 9 84606240 84606240 C T SPATA31D1 Silent p.A285A 0.28 TCGA-MN-A4N4-01 9 84606651 84606651 G T SPATA31D1 Missense_Mutation p.R422S 0.49 deleterious(0) probably_damaging(0.979) TCGA-MN-A4N4-01 9 84609637 84609637 G C SPATA31D1 Missense_Mutation p.G1418R 0.09 tolerated(0.07) possibly_damaging(0.901) TCGA-MN-A4N4-01 9 8471058 8471058 C T PTPRD Silent p.L1147L 0.08 TCGA-MN-A4N4-01 9 86617752 86617752 G A RMI1 Silent p.E617E 0.28 TCGA-MN-A4N4-01 9 87563493 87563493 C A NTRK2 Missense_Mutation p.D627E 0.22 tolerated(0.71) benign(0.02) TCGA-MN-A4N4-01 9 91616385 91616385 C G S1PR3 Missense_Mutation p.I90M 0.14 deleterious(0.01) possibly_damaging(0.806) TCGA-MN-A4N4-01 9 95298264 95298264 G C ECM2 5'UTR 0.21 TCGA-MN-A4N4-01 9 95778049 95778049 A C FGD3 Missense_Mutation p.K405Q 0.06 deleterious(0) probably_damaging(0.983) TCGA-MN-A4N4-01 9 98270446 98270446 G T PTCH1 Silent p.S66S 0.17 TCGA-MN-A4N4-01 X 100276298 100276298 C G TRMT2B Missense_Mutation p.M286I 0.13 tolerated(0.13) benign(0.064) TCGA-MN-A4N4-01 X 100381766 100381766 A G CENPI Silent p.V252V 0.36 TCGA-MN-A4N4-01 X 101382207 101382207 C A TCEAL2 Silent p.P135P 0.15 TCGA-MN-A4N4-01 X 101770089 101770089 C A TMSB15A Translation_Start_Site p.M1? 0.42 deleterious(0.04) benign(0) TCGA-MN-A4N4-01 X 108619336 108619336 G T GUCY2F Missense_Mutation p.P1071T 0.11 deleterious(0) benign(0.307) TCGA-MN-A4N4-01 X 111155608 111155608 G C TRPC5 Missense_Mutation p.H271D 0.47 deleterious(0.01) possibly_damaging(0.625) TCGA-MN-A4N4-01 X 11174649 11174649 G T ARHGAP6 Nonsense_Mutation p.S636* 0.47 TCGA-MN-A4N4-01 X 112024005 112024005 C A AMOT Intron 0.27 TCGA-MN-A4N4-01 X 112024006 112024006 C A AMOT Intron 0.27 TCGA-MN-A4N4-01 X 11204421 11204421 A T ARHGAP6 Missense_Mutation p.L403Q 0.48 deleterious(0) probably_damaging(0.93) TCGA-MN-A4N4-01 X 119565035 119565035 G C LAMP2 Intron 0.17 TCGA-MN-A4N4-01 X 123514556 123514556 C A TENM1 Nonsense_Mutation p.E2677* 0.47 TCGA-MN-A4N4-01 X 12734828 12734828 C A FRMPD4 Missense_Mutation p.D750E 0.47 deleterious_low_confidence(0.01) benign(0.081) TCGA-MN-A4N4-01 X 129361676 129361676 C T ZNF280C Missense_Mutation p.E410K 0.30 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 X 134680696 134680696 A T DDX26B Missense_Mutation p.R167W 0.32 deleterious(0) probably_damaging(0.995) TCGA-MN-A4N4-01 X 135404984 135404984 G C GPR112 Missense_Mutation p.D40H 0.57 tolerated(0.06) probably_damaging(0.969) TCGA-MN-A4N4-01 X 137821454 137821454 C A FGF13 Intron 0.40 TCGA-MN-A4N4-01 X 140336566 140336566 C A SPANXC Missense_Mutation p.G9W 0.18 deleterious(0) probably_damaging(0.979) TCGA-MN-A4N4-01 X 140985304 140985304 G A MAGEC3 Intron 0.21 TCGA-MN-A4N4-01 X 1413304 1413304 C T CSF2RA Nonsense_Mutation p.Q244* 0.38 TCGA-MN-A4N4-01 X 142718375 142718375 C T SLITRK4 Missense_Mutation p.D184N 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-MN-A4N4-01 X 144904208 144904208 G T SLITRK2 Missense_Mutation p.V89L 0.32 tolerated(0.05) benign(0.215) TCGA-MN-A4N4-01 X 14592454 14592454 G T GLRA2 Splice_Site p.X68_splice 0.38 TCGA-MN-A4N4-01 X 14625351 14625351 G A GLRA2 Missense_Mutation p.E226K 0.25 tolerated(0.07) probably_damaging(0.936) TCGA-MN-A4N4-01 X 148037902 148037902 C A AFF2 Missense_Mutation p.P776Q 0.53 tolerated(0.85) possibly_damaging(0.798) TCGA-MN-A4N4-01 X 149100786 149100786 C T CXorf40B Silent p.L151L 0.34 TCGA-MN-A4N4-01 X 149887136 149887136 G T MTMR1 Missense_Mutation p.A98S 0.35 tolerated(0.45) benign(0.063) TCGA-MN-A4N4-01 X 1501551 1501551 C T IL3RA 3'UTR 0.47 TCGA-MN-A4N4-01 X 150773180 150773180 G C PASD1 Missense_Mutation p.D31H 0.33 deleterious(0) probably_damaging(0.933) TCGA-MN-A4N4-01 X 151896316 151896316 G C MAGEA12 3'Flank 0.42 TCGA-MN-A4N4-01 X 151935697 151935697 G A MAGEA3 Missense_Mutation p.S157F 0.13 tolerated(0.52) benign(0.011) TCGA-MN-A4N4-01 X 152225360 152225360 G T PNMA3 5'UTR 0.31 TCGA-MN-A4N4-01 X 18189171 18189171 A T BEND2 Missense_Mutation p.L712Q 0.12 tolerated(0.22) benign(0.253) TCGA-MN-A4N4-01 X 19025389 19025389 G T GPR64 Missense_Mutation p.N551K 0.42 deleterious(0.04) probably_damaging(0.999) TCGA-MN-A4N4-01 X 19555848 19555848 C A SH3KBP1 Missense_Mutation p.R648L 0.46 deleterious(0) probably_damaging(0.954) TCGA-MN-A4N4-01 X 31496435 31496435 C A DMD Nonsense_Mutation p.E2909* 0.12 TCGA-MN-A4N4-01 X 3241049 3241049 C T MXRA5 Missense_Mutation p.E893K 0.11 tolerated(0.57) benign(0.003) TCGA-MN-A4N4-01 X 32509537 32509537 C - DMD Frame_Shift_Del p.E827Sfs*19 0.09 TCGA-MN-A4N4-01 X 32841472 32841472 G A DMD Silent p.I99I 0.19 TCGA-MN-A4N4-01 X 32841504 32841504 C A DMD Missense_Mutation p.V89F 0.18 probably_damaging(0.961) TCGA-MN-A4N4-01 X 34149102 34149102 G A FAM47A Silent p.L432L 0.46 TCGA-MN-A4N4-01 X 34961124 34961124 G T FAM47B Missense_Mutation p.R59L 0.43 deleterious(0.05) possibly_damaging(0.853) TCGA-MN-A4N4-01 X 34962665 34962665 G A FAM47B Missense_Mutation p.V573I 0.15 tolerated(0.1) benign(0.082) TCGA-MN-A4N4-01 X 34962886 34962886 G A FAM47B Silent p.%3D 0.32 TCGA-MN-A4N4-01 X 37642838 37642838 C T CYBB Silent p.L79L 0.25 TCGA-MN-A4N4-01 X 39933592 39933592 G T BCOR Nonsense_Mutation p.S336* 0.23 TCGA-MN-A4N4-01 X 41091776 41091776 G A USP9X Silent p.%3D 0.09 TCGA-MN-A4N4-01 X 44929405 44929405 G A KDM6A Silent p.Q835Q 0.23 TCGA-MN-A4N4-01 X 47101481 47101481 G T USP11 Nonsense_Mutation p.E437* 0.33 TCGA-MN-A4N4-01 X 48629412 48629412 C A GLOD5 Missense_Mutation p.P91T 0.60 deleterious(0.01) probably_damaging(0.988) TCGA-MN-A4N4-01 X 48631913 48631913 A T GLOD5 3'UTR 0.19 TCGA-MN-A4N4-01 X 49063317 49063317 C A CACNA1F Splice_Site p.X1755_splice 0.47 TCGA-MN-A4N4-01 X 49965625 49965625 C A AKAP4 5'UTR 0.16 TCGA-MN-A4N4-01 X 50118032 50118032 C T DGKK RNA 0.48 TCGA-MN-A4N4-01 X 53641508 53641508 C G HUWE1 Missense_Mutation p.E750Q 0.21 benign(0.048) TCGA-MN-A4N4-01 X 54028636 54028636 C G PHF8 Missense_Mutation p.E401Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 X 55052419 55052419 G T ALAS2 Silent p.A5A 0.38 TCGA-MN-A4N4-01 X 57620720 57620721 AG - ZXDB Frame_Shift_Del p.S747Cfs*17 0.09 TCGA-MN-A4N4-01 X 66931264 66931264 G T AR Missense_Mutation p.G636C 0.25 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 X 70598299 70598299 T A TAF1 Missense_Mutation p.I403K 0.14 tolerated(0.93) benign(0.001) TCGA-MN-A4N4-01 X 73749081 73749081 A G SLC16A2 Missense_Mutation p.M402V 0.64 deleterious(0.04) benign(0.145) TCGA-MN-A4N4-01 X 74742845 74742845 C A ZDHHC15 Missense_Mutation p.W5C 0.09 tolerated_low_confidence(0.36) benign(0.002) TCGA-MN-A4N4-01 X 77245369 77245369 G T ATP7A Silent p.G417G 0.39 TCGA-MN-A4N4-01 X 78010784 78010784 A T LPAR4 Missense_Mutation p.I140F 0.43 deleterious(0) probably_damaging(1) TCGA-MN-A4N4-01 X 7811598 7811598 G A VCX Silent p.G54G 0.19 TCGA-MN-A4N4-01 X 84559354 84559354 A G POF1B Missense_Mutation p.S521P 0.28 deleterious(0.04) probably_damaging(0.988) TCGA-MN-A4N4-01 X 85994858 85994858 C G DACH2 Missense_Mutation p.Q405E 0.27 tolerated(0.54) benign(0.103) TCGA-MN-A4N4-01 X 86890717 86890717 G - KLHL4 Frame_Shift_Del p.H625Mfs*32 0.44 TCGA-MN-A4N4-01 X 91132951 91132951 C A PCDH11X Missense_Mutation p.T571N 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-MN-A4N4-01 X 91133214 91133214 G A PCDH11X Missense_Mutation p.V659I 0.31 tolerated(0.1) possibly_damaging(0.776) TCGA-MN-A4N4-01 X 91642909 91642909 A T PCDH11X Missense_Mutation p.D1107V 0.25 deleterious(0) probably_damaging(0.986) TCGA-MN-A4N4-01 X 92927879 92927879 G C NAP1L3 Missense_Mutation p.P142R 0.13 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N4-01 X 92927990 92927990 C G NAP1L3 Missense_Mutation p.R105T 0.14 deleterious(0) probably_damaging(0.985) TCGA-MN-A4N4-01 X 92965225 92965225 C A FAM133A 3'UTR 0.12 TCGA-MN-A4N4-01 X 9900701 9900701 C T SHROOM2 Silent p.T1126T 0.20 TCGA-MN-A4N4-01 Y 16942334 16942334 C G NLGN4Y Missense_Mutation p.F512L 0.06 deleterious(0.01) probably_damaging(0.915) TCGA-MN-A4N4-01 Y 4968113 4968114 AT - PCDH11Y Frame_Shift_Del p.I832Sfs*2 0.08 TCGA-MN-A4N5-01 10 101829626 101829626 C A CPN1 Missense_Mutation p.G141C 0.33 deleterious(0) possibly_damaging(0.725) TCGA-MN-A4N5-01 10 103342589 103342589 G T POLL Silent p.I375I 0.13 TCGA-MN-A4N5-01 10 108437123 108437123 C A SORCS1 Missense_Mutation p.G594C 0.36 deleterious(0) probably_damaging(1) TCGA-MN-A4N5-01 10 118689426 118689426 C G KIAA1598 Missense_Mutation p.D316H 0.14 deleterious(0) probably_damaging(0.991) TCGA-MN-A4N5-01 10 126311602 126311602 C T FAM53B 3'UTR 0.25 TCGA-MN-A4N5-01 10 24813628 24813628 A G KIAA1217 Missense_Mutation p.M945V 0.06 tolerated(0.19) benign(0.003) TCGA-MN-A4N5-01 10 25886815 25886815 A T GPR158 Missense_Mutation p.I754F 0.24 deleterious(0.01) benign(0.016) TCGA-MN-A4N5-01 10 25887777 25887777 G T GPR158 Missense_Mutation p.W1074C 0.21 deleterious(0) possibly_damaging(0.571) TCGA-MN-A4N5-01 10 28348647 28348647 C T MPP7 Silent p.Q410Q 0.21 TCGA-MN-A4N5-01 10 30318251 30318251 C T KIAA1462 Missense_Mutation p.E276K 0.11 deleterious(0.04) possibly_damaging(0.471) TCGA-MN-A4N5-01 10 38647352 38647352 G C HSD17B7P2 RNA 0.21 TCGA-MN-A4N5-01 10 48413582 48413582 C G GDF2 Missense_Mutation p.R429T 0.17 deleterious(0) probably_damaging(1) TCGA-MN-A4N5-01 10 55569024 55569024 C G PCDH15 Missense_Mutation p.V530L 0.10 deleterious_low_confidence(0) unknown(0) TCGA-MN-A4N5-01 10 76857553 76857553 C T DUSP13 Silent p.S80S 0.27 TCGA-MN-A4N5-01 10 78868278 78868278 T C KCNMA1 Missense_Mutation p.K395R 0.42 tolerated(0.58) benign(0.005) TCGA-MN-A4N5-01 10 8007492 8007492 G T TAF3 Missense_Mutation p.R673S 0.27 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-MN-A4N5-01 10 85968013 85968013 C T CDHR1 Silent p.H349H 0.19 TCGA-MN-A4N5-01 11 108385583 108385583 G A EXPH5 Silent p.S217S 0.47 TCGA-MN-A4N5-01 11 111782353 111782353 C A CRYAB Silent p.L32L 0.29 TCGA-MN-A4N5-01 11 113568013 113568013 C A TMPRSS5 Silent p.G152G 0.36 TCGA-MN-A4N5-01 11 117785164 117785164 C A TMPRSS13 Missense_Mutation p.A208S 0.27 tolerated(0.31) benign(0.08) TCGA-MN-A4N5-01 11 14535935 14535935 C A PSMA1 Intron 0.22 TCGA-MN-A4N5-01 11 14539204 14539204 C A PSMA1 Missense_Mutation p.D86Y 0.11 deleterious(0) probably_damaging(1) TCGA-MN-A4N5-01 11 14666479 14666479 G T PDE3B Silent p.V286V 0.17 TCGA-MN-A4N5-01 11 18231801 18231801 G T RP11-113D6.10 3'UTR 0.32 TCGA-MN-A4N5-01 11 20869207 20869207 G T NELL1 Missense_Mutation p.E138D 0.28 deleterious(0) possibly_damaging(0.898) TCGA-MN-A4N5-01 11 22360063 22360063 C A SLC17A6 5'UTR 0.23 TCGA-MN-A4N5-01 11 34133651 34133651 C T NAT10 Silent p.L85L 0.08 TCGA-MN-A4N5-01 11 44129683 44129683 G C EXT2 Missense_Mutation p.D174H 0.16 tolerated(0.14) possibly_damaging(0.482) TCGA-MN-A4N5-01 11 45891164 45891164 G T CRY2 Silent p.G351G 0.28 TCGA-MN-A4N5-01 11 47653259 47653263 GTTGT - MTCH2 Frame_Shift_Del p.T124Sfs*39 0.28 TCGA-MN-A4N5-01 11 55681632 55681632 G T OR5W2 Missense_Mutation p.L143I 0.36 tolerated(0.19) benign(0.064) TCGA-MN-A4N5-01 11 58477574 58477574 G T GLYAT Missense_Mutation p.H186N 0.44 tolerated(0.47) benign(0.008) TCGA-MN-A4N5-01 11 58605747 58605747 C A GLYATL2 Missense_Mutation p.R58L 0.49 deleterious(0.01) possibly_damaging(0.496) TCGA-MN-A4N5-01 11 59283134 59283134 A G OR4D9 Missense_Mutation p.H250R 0.29 tolerated(0.35) possibly_damaging(0.883) TCGA-MN-A4N5-01 11 608234 608234 G T PHRF1 Missense_Mutation p.Q925H 0.27 deleterious(0.04) possibly_damaging(0.892) TCGA-MN-A4N5-01 11 62358977 62358978 - A TUT1 Frame_Shift_Ins p.C32Lfs*39 0.19 TCGA-MN-A4N5-01 11 64022373 64022373 C T PLCB3 Missense_Mutation p.P84S 0.08 tolerated(0.11) benign(0.036) TCGA-MN-A4N5-01 11 6661509 6661509 C A DCHS1 Missense_Mutation p.D446Y 0.12 deleterious(0) probably_damaging(1) TCGA-MN-A4N5-01 11 68574989 68574989 G T CPT1A Missense_Mutation p.H133Q 0.36 tolerated(0.08) benign(0.186) TCGA-MN-A4N5-01 11 7064353 7064353 T C NLRP14 Missense_Mutation p.C366R 0.24 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N5-01 11 73429731 73429731 T C RAB6A Intron 0.45 TCGA-MN-A4N5-01 11 7531164 7531165 AG T OLFML1 Frame_Shift_Del p.E318Dfs*53 0.15 TCGA-MN-A4N5-01 11 76877153 76877153 T C MYO7A Missense_Mutation p.V581A 0.14 deleterious(0) probably_damaging(0.957) TCGA-MN-A4N5-01 11 78381536 78381536 G T TENM4 Missense_Mutation p.R1952S 0.36 tolerated(0.13) possibly_damaging(0.545) TCGA-MN-A4N5-01 11 85630558 85630558 G A CCDC83 3'UTR 0.22 TCGA-MN-A4N5-01 11 92534789 92534789 C A FAT3 Missense_Mutation p.S2870R 0.32 probably_damaging(0.948) TCGA-MN-A4N5-01 11 99944985 99944985 C A CNTN5 Silent p.I513I 0.47 TCGA-MN-A4N5-01 12 117681165 117681165 G T NOS1 Missense_Mutation p.R1001S 0.36 tolerated(0.53) probably_damaging(0.93) TCGA-MN-A4N5-01 12 129569276 129569276 G T TMEM132D Intron 0.39 TCGA-MN-A4N5-01 12 22796881 22796881 A G ETNK1 Missense_Mutation p.N203S 0.34 tolerated(0.17) benign(0.057) TCGA-MN-A4N5-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.41 deleterious(0.04) probably_damaging(0.993) TCGA-MN-A4N5-01 12 39735910 39735910 C A KIF21A Missense_Mutation p.D577Y 0.21 deleterious(0.01) benign(0.1) TCGA-MN-A4N5-01 12 45410260 45410260 G T DBX2 Missense_Mutation p.P277T 0.17 tolerated(0.15) benign(0.039) TCGA-MN-A4N5-01 12 46765158 46765158 T A SLC38A2 5'UTR 0.18 TCGA-MN-A4N5-01 12 54854184 54854184 G - GTSF1 Frame_Shift_Del p.P155Rfs*15 0.24 TCGA-MN-A4N5-01 12 58335607 58335607 C T XRCC6BP1 Silent p.F41F 0.13 TCGA-MN-A4N5-01 12 6058234 6058234 C A VWF Nonsense_Mutation p.E2797* 0.32 TCGA-MN-A4N5-01 12 63954444 63954444 T A DPY19L2 Splice_Site p.X709_splice 0.13 TCGA-MN-A4N5-01 12 9333618 9333618 C A PZP Silent p.V600V 0.25 TCGA-MN-A4N5-01 12 95397414 95397414 T G NDUFA12 Missense_Mutation p.T15P 0.30 tolerated(0.16) benign(0.037) TCGA-MN-A4N5-01 13 106118652 106118652 G T DAOA Silent p.L5L 0.16 TCGA-MN-A4N5-01 13 20411925 20411925 T C ZMYM5 Silent p.P303P 0.35 TCGA-MN-A4N5-01 13 23906171 23906171 C G SACS Missense_Mutation p.Q3948H 0.30 probably_damaging(0.986) TCGA-MN-A4N5-01 13 25009358 25009358 T A PARP4 Silent p.P1307P 0.12 TCGA-MN-A4N5-01 13 25267035 25267035 G A ATP12A Splice_Site p.X465_splice 0.09 TCGA-MN-A4N5-01 13 28901622 28901622 G T FLT1 Missense_Mutation p.R925S 0.21 deleterious(0) probably_damaging(1) TCGA-MN-A4N5-01 13 31513830 31513830 G A TEX26 Splice_Site p.X21_splice 0.17 TCGA-MN-A4N5-01 13 36744674 36744674 G T SOHLH2 Missense_Mutation p.N494K 0.15 tolerated(0.16) benign(0.024) TCGA-MN-A4N5-01 13 37679472 37679472 C A CSNK1A1L 5'UTR 0.24 TCGA-MN-A4N5-01 13 46924402 46924402 G C KIAA0226L Missense_Mutation p.P472R 0.36 deleterious(0) probably_damaging(1) TCGA-MN-A4N5-01 13 60498954 60498954 T C DIAPH3 Missense_Mutation p.I709V 0.26 tolerated(1) benign(0.283) TCGA-MN-A4N5-01 13 76423332 76423332 G T LMO7 Missense_Mutation p.R1190M 0.15 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N5-01 13 92003630 92003630 G T MIR17HG RNA 0.17 TCGA-MN-A4N5-01 14 101349287 101349287 G A RTL1 Silent p.T613T 0.13 TCGA-MN-A4N5-01 14 104206854 104206854 C A PPP1R13B Silent p.T633T 0.32 TCGA-MN-A4N5-01 14 105419028 105419028 C T AHNAK2 Silent p.E920E 0.16 TCGA-MN-A4N5-01 14 106320570 106320570 C A IGHM Missense_Mutation p.V414L 0.38 tolerated(0.25) benign(0.174) TCGA-MN-A4N5-01 14 20691912 20691912 C G OR11H6 Missense_Mutation p.T15R 0.21 tolerated_low_confidence(0.06) benign(0.004) TCGA-MN-A4N5-01 14 23826629 23826629 C A EFS Missense_Mutation p.A498S 0.24 tolerated(0.07) possibly_damaging(0.472) TCGA-MN-A4N5-01 14 23855660 23855660 C T MYH6 Missense_Mutation p.R1608H 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-MN-A4N5-01 14 50089059 50089059 T G MGAT2 Missense_Mutation p.L358R 0.15 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N5-01 14 51448809 51448809 G T TRIM9 Missense_Mutation p.A539D 0.14 deleterious(0.03) benign(0.09) TCGA-MN-A4N5-01 14 58031040 58031040 G T SLC35F4 Missense_Mutation p.T460N 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-MN-A4N5-01 14 62567436 62567436 C A SYT16 3'UTR 0.13 TCGA-MN-A4N5-01 14 64882111 64882115 TACTG - MTHFD1 Frame_Shift_Del p.V94Wfs*15 0.09 TCGA-MN-A4N5-01 14 65251017 65251017 G C SPTB Missense_Mutation p.A1317G 0.35 deleterious(0) possibly_damaging(0.873) TCGA-MN-A4N5-01 14 69349638 69349638 G C ACTN1 Missense_Mutation p.N590K 0.16 tolerated(0.06) probably_damaging(0.989) TCGA-MN-A4N5-01 14 73577824 73577824 G A RBM25 Missense_Mutation p.E660K 0.15 benign(0.292) TCGA-MN-A4N5-01 14 80130247 80130247 A G NRXN3 Missense_Mutation p.T818A 0.07 deleterious(0) benign(0) TCGA-MN-A4N5-01 14 91770194 91770194 C A CCDC88C Silent p.A1162A 0.11 TCGA-MN-A4N5-01 14 94582778 94582778 G T IFI27 Splice_Site p.X92_splice 0.47 TCGA-MN-A4N5-01 14 94953739 94953739 G T SERPINA12 Silent p.L382L 0.29 TCGA-MN-A4N5-01 14 96134629 96134629 G T TCL6 Intron 0.15 TCGA-MN-A4N5-01 14 96136810 96136810 C T TCL6 RNA 0.19 TCGA-MN-A4N5-01 14 99641339 99641339 C G BCL11B Missense_Mutation p.E612Q 0.40 tolerated(0.07) benign(0.111) TCGA-MN-A4N5-01 15 24922625 24922625 C T NPAP1 Silent p.S537S 0.15 TCGA-MN-A4N5-01 15 33954942 33954942 G T RYR3 Silent p.V1737V 0.30 TCGA-MN-A4N5-01 15 34102754 34102754 C T RYR3 Silent p.I3367I 0.29 TCGA-MN-A4N5-01 15 34546748 34546748 C G SLC12A6 Missense_Mutation p.A307P 0.18 tolerated(0.33) benign(0.009) TCGA-MN-A4N5-01 15 34656217 34656217 G C LPCAT4 Missense_Mutation p.P217A 0.14 deleterious(0.01) probably_damaging(1) TCGA-MN-A4N5-01 15 38990648 38990648 G C C15orf53 Missense_Mutation p.G148R 0.36 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-MN-A4N5-01 15 40005743 40005743 G T FSIP1 Missense_Mutation p.P364T 0.13 deleterious(0) probably_damaging(0.976) TCGA-MN-A4N5-01 15 40630768 40630768 G T C15orf52 Missense_Mutation p.Q205K 0.14 deleterious(0.04) possibly_damaging(0.487) TCGA-MN-A4N5-01 15 48450410 48450410 C A MYEF2 Missense_Mutation p.G295W 0.29 deleterious(0) probably_damaging(1) TCGA-MN-A4N5-01 15 48539146 48539146 C T SLC12A1 Missense_Mutation p.A498V 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-MN-A4N5-01 15 51350068 51350068 G A TNFAIP8L3 3'UTR 0.35 TCGA-MN-A4N5-01 15 52098712 52098712 G T TMOD2 Missense_Mutation p.D339Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N5-01 15 59911871 59911871 G T GCNT3 3'UTR 0.13 TCGA-MN-A4N5-01 15 78466004 78466004 C T ACSBG1 Missense_Mutation p.A674T 0.16 deleterious(0.02) possibly_damaging(0.643) TCGA-MN-A4N5-01 15 78922111 78922111 G T CHRNB4 Missense_Mutation p.T179K 0.12 tolerated(0.12) possibly_damaging(0.676) TCGA-MN-A4N5-01 15 81295609 81295609 G T MESDC1 Missense_Mutation p.V333L 0.28 deleterious(0.01) benign(0.129) TCGA-MN-A4N5-01 15 82337975 82337975 C A MEX3B Silent p.G24G 0.31 TCGA-MN-A4N5-01 15 84159546 84159546 C A SH3GL3 Intron 0.29 TCGA-MN-A4N5-01 15 86124640 86124640 A G AKAP13 Missense_Mutation p.D1114G 0.30 tolerated_low_confidence(0.11) benign(0.013) TCGA-MN-A4N5-01 15 90255326 90255326 C A WDR93 Missense_Mutation p.L211I 0.36 deleterious(0.01) probably_damaging(0.939) TCGA-MN-A4N5-01 15 91524890 91524890 G T PRC1 Missense_Mutation p.R171S 0.24 deleterious(0.04) benign(0.061) TCGA-MN-A4N5-01 16 1034721 1034721 A T SOX8 Missense_Mutation p.T226S 0.23 deleterious(0.02) probably_damaging(0.993) TCGA-MN-A4N5-01 16 27689260 27689260 C T KIAA0556 Missense_Mutation p.R251C 0.26 tolerated(0.31) benign(0.002) TCGA-MN-A4N5-01 16 30409152 30409152 G T ZNF48 Missense_Mutation p.C194F 0.12 deleterious(0) probably_damaging(1) TCGA-MN-A4N5-01 16 30941470 30941470 G A FBXL19 Missense_Mutation p.R309H 0.28 deleterious(0.02) possibly_damaging(0.894) TCGA-MN-A4N5-01 16 3294277 3294277 C A MEFV Missense_Mutation p.R579L 0.10 tolerated(0.07) benign(0.111) TCGA-MN-A4N5-01 16 3647809 3647809 C A SLX4 Missense_Mutation p.R452I 0.26 deleterious(0) possibly_damaging(0.743) TCGA-MN-A4N5-01 16 57261275 57261275 G A RSPRY1 Missense_Mutation p.D395N 0.19 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N5-01 16 57261318 57261318 G A RSPRY1 Nonsense_Mutation p.W409* 0.30 TCGA-MN-A4N5-01 16 64982513 64982513 G T CDH11 Intron 0.28 TCGA-MN-A4N5-01 16 74425441 74425441 A G NPIPB15 Silent p.T265T 0.08 TCGA-MN-A4N5-01 16 74499668 74499668 C A GLG1 Missense_Mutation p.R858L 0.27 tolerated(0.31) benign(0.017) TCGA-MN-A4N5-01 16 90124291 90124291 C T PRDM7 3'UTR 0.23 TCGA-MN-A4N5-01 17 10298754 10298754 G T MYH8 Missense_Mutation p.S1553Y 0.39 deleterious(0) benign(0.367) TCGA-MN-A4N5-01 17 10415793 10415793 A G MYH1 Missense_Mutation p.M360T 0.20 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N5-01 17 25937217 25937217 G T KSR1 Missense_Mutation p.A669S 0.20 deleterious(0.03) possibly_damaging(0.467) TCGA-MN-A4N5-01 17 26110107 26110107 T A NOS2 Missense_Mutation p.R165W 0.18 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N5-01 17 32690181 32690181 G T CCL1 5'UTR 0.19 TCGA-MN-A4N5-01 17 33504150 33504150 G T UNC45B Splice_Site p.X715_splice 0.22 TCGA-MN-A4N5-01 17 38033005 38033005 C A ZPBP2 Silent p.T320T 0.24 TCGA-MN-A4N5-01 17 39092907 39092907 C T KRT23 5'UTR 0.15 TCGA-MN-A4N5-01 17 39596429 39596429 C A KRT38 Missense_Mutation p.D187Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N5-01 17 43111636 43111636 G A DCAKD Missense_Mutation p.R79W 0.29 deleterious(0) possibly_damaging(0.773) TCGA-MN-A4N5-01 17 51900544 51900544 C A KIF2B Missense_Mutation p.N50K 0.27 tolerated(0.19) benign(0.003) TCGA-MN-A4N5-01 17 56274299 56274299 G A EPX Splice_Site p.X268_splice 0.25 TCGA-MN-A4N5-01 17 56387495 56387495 C A BZRAP1 Missense_Mutation p.V1242F 0.20 tolerated(0.26) benign(0.304) TCGA-MN-A4N5-01 17 72356188 72356188 G T BTBD17 Missense_Mutation p.F94L 0.23 tolerated(0.11) benign(0.032) TCGA-MN-A4N5-01 17 73832278 73832278 C T UNC13D Intron 0.11 TCGA-MN-A4N5-01 17 74005485 74005485 C A EVPL Silent p.L1267L 0.18 TCGA-MN-A4N5-01 17 7574000 7574000 C A TP53 Nonsense_Mutation p.E343* 0.45 TCGA-MN-A4N5-01 18 13056398 13056398 C A CEP192 Missense_Mutation p.P1270H 0.27 deleterious(0.03) probably_damaging(0.926) TCGA-MN-A4N5-01 18 13387708 13387708 G T LDLRAD4 5'UTR 0.28 TCGA-MN-A4N5-01 18 13826277 13826277 G - MC5R Frame_Shift_Del p.G172Afs*89 0.22 TCGA-MN-A4N5-01 18 21418823 21418823 G T LAMA3 Missense_Mutation p.G1058W 0.31 probably_damaging(0.95) TCGA-MN-A4N5-01 18 28610996 28610996 A T DSC3 Silent p.S99S 0.22 TCGA-MN-A4N5-01 18 28919881 28919881 T A DSG1 Missense_Mutation p.V527E 0.23 tolerated(0.77) benign(0.021) TCGA-MN-A4N5-01 18 33689687 33689687 C T SLC39A6 Missense_Mutation p.D713N 0.66 tolerated(0.06) probably_damaging(1) TCGA-MN-A4N5-01 18 34322723 34322723 C A FHOD3 Missense_Mutation p.D1086E 0.83 deleterious(0) benign(0.258) TCGA-MN-A4N5-01 18 3879834 3879834 G T DLGAP1 Missense_Mutation p.Q79K 0.44 tolerated(0.14) benign(0.021) TCGA-MN-A4N5-01 18 51731388 51731388 C T MBD2 Missense_Mutation p.D228N 0.34 deleterious(0.01) possibly_damaging(0.691) TCGA-MN-A4N5-01 18 65179918 65179918 C A DSEL Missense_Mutation p.S653I 0.34 deleterious(0) possibly_damaging(0.643) TCGA-MN-A4N5-01 18 67672461 67672461 C A RTTN Missense_Mutation p.D2190Y 0.20 deleterious(0) probably_damaging(0.91) TCGA-MN-A4N5-01 18 67836099 67836099 C A RTTN Missense_Mutation p.G561W 0.34 tolerated(0.11) possibly_damaging(0.625) TCGA-MN-A4N5-01 18 72345667 72345667 T C ZNF407 Missense_Mutation p.C898R 0.19 deleterious(0.02) probably_damaging(0.997) TCGA-MN-A4N5-01 19 14034203 14034203 G T CC2D1A Missense_Mutation p.G567C 0.38 deleterious(0.04) benign(0.132) TCGA-MN-A4N5-01 19 1488000 1488000 C T PCSK4 Missense_Mutation p.G160D 0.30 deleterious(0) probably_damaging(1) TCGA-MN-A4N5-01 19 16268598 16268598 A G HSH2D 3'Flank 0.58 TCGA-MN-A4N5-01 19 17108088 17108088 C G CPAMD8 Missense_Mutation p.E357Q 0.23 tolerated(0.11) possibly_damaging(0.747) TCGA-MN-A4N5-01 19 19360802 19360802 A G NCAN 3'UTR 0.38 TCGA-MN-A4N5-01 19 22154264 22154264 T A ZNF208 Missense_Mutation p.H1191L 0.21 deleterious(0) probably_damaging(0.932) TCGA-MN-A4N5-01 19 22154265 22154265 G T ZNF208 Missense_Mutation p.H1191N 0.22 deleterious(0) probably_damaging(0.978) TCGA-MN-A4N5-01 19 23541850 23541850 T G ZNF91 3'UTR 0.73 TCGA-MN-A4N5-01 19 35791296 35791296 T A MAG Missense_Mutation p.L320H 0.16 deleterious(0) probably_damaging(0.995) TCGA-MN-A4N5-01 19 36362895 36362895 G T APLP1 Silent p.T269T 0.14 TCGA-MN-A4N5-01 19 37005004 37005004 C T ZNF260 Missense_Mutation p.M379I 0.12 deleterious(0) possibly_damaging(0.507) TCGA-MN-A4N5-01 19 39026032 39026032 G T RYR1 Missense_Mutation p.S3839I 0.35 benign(0) TCGA-MN-A4N5-01 19 39026033 39026033 G T RYR1 Splice_Site p.X3839_splice 0.35 TCGA-MN-A4N5-01 19 44635689 44635689 A G ZNF225 Missense_Mutation p.M308V 0.37 tolerated(0.19) benign(0.006) TCGA-MN-A4N5-01 19 48517565 48517565 G T ELSPBP1 Missense_Mutation p.D70Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N5-01 19 48620982 48620982 G A LIG1 Silent p.P832P 0.29 TCGA-MN-A4N5-01 19 48620984 48620984 G A LIG1 Missense_Mutation p.P832S 0.29 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N5-01 19 50214066 50214066 G T CPT1C Silent p.T606T 0.36 TCGA-MN-A4N5-01 19 50548853 50548853 A G ZNF473 Missense_Mutation p.R385G 0.37 deleterious(0.05) possibly_damaging(0.849) TCGA-MN-A4N5-01 19 52091501 52091501 A G ZNF175 Silent p.G639G 0.19 TCGA-MN-A4N5-01 19 52272302 52272302 G T FPR2 Missense_Mutation p.V131F 0.13 deleterious(0) probably_damaging(0.954) TCGA-MN-A4N5-01 19 54299229 54299229 C A NLRP12 Silent p.L994L 0.17 TCGA-MN-A4N5-01 19 54561818 54561818 C G VSTM1 Missense_Mutation p.A33P 0.28 deleterious(0) probably_damaging(0.998) TCGA-MN-A4N5-01 19 55221917 55221917 G T AC098784.2 3'Flank 0.31 TCGA-MN-A4N5-01 19 56369623 56369623 G C NLRP4 Silent p.R288R 0.12 TCGA-MN-A4N5-01 19 57334979 57334979 G C PEG3 Missense_Mutation p.H155D 0.09 deleterious(0) benign(0.008) TCGA-MN-A4N5-01 19 58437744 58437744 C G ZNF418 Missense_Mutation p.R602P 0.26 tolerated(0.23) benign(0.217) TCGA-MN-A4N5-01 19 58437745 58437745 G A ZNF418 Nonsense_Mutation p.R602* 0.26 TCGA-MN-A4N5-01 19 58437746 58437746 A G ZNF418 Silent p.T601T 0.26 TCGA-MN-A4N5-01 19 7527130 7527130 G T ARHGEF18 Missense_Mutation p.D661Y 0.14 deleterious(0) possibly_damaging(0.827) TCGA-MN-A4N5-01 19 9236778 9236778 G T OR7G3 Silent p.P283P 0.28 TCGA-MN-A4N5-01 19 9236779 9236779 G T OR7G3 Missense_Mutation p.P283H 0.27 deleterious(0) probably_damaging(0.951) TCGA-MN-A4N5-01 19 9325150 9325150 G T OR7D4 Silent p.R122R 0.32 TCGA-MN-A4N5-01 19 9453364 9453364 C A ZNF559 Missense_Mutation p.Q413K 0.30 tolerated(0.59) benign(0) TCGA-MN-A4N5-01 1 112524698 112524698 C A KCND3 Silent p.P217P 0.22 TCGA-MN-A4N5-01 1 114225007 114225007 T A MAGI3 Intron 0.31 TCGA-MN-A4N5-01 1 115217372 115217372 C A AMPD1 Splice_Site p.X633_splice 0.09 TCGA-MN-A4N5-01 1 115217373 115217373 C A AMPD1 Missense_Mutation p.K633N 0.07 deleterious(0) probably_damaging(1) TCGA-MN-A4N5-01 1 120466386 120466386 C A NOTCH2 Missense_Mutation p.R1578L 0.24 tolerated(0.58) probably_damaging(0.999) TCGA-MN-A4N5-01 1 1273928 1273928 T C DVL1 Missense_Mutation p.K413R 0.28 deleterious(0) probably_damaging(0.953) TCGA-MN-A4N5-01 1 145561799 145561799 G T ANKRD35 Missense_Mutation p.R496M 0.12 deleterious(0.02) possibly_damaging(0.507) TCGA-MN-A4N5-01 1 149882227 149882227 G C SV2A Nonsense_Mutation p.Y328* 0.50 TCGA-MN-A4N5-01 1 151779815 151779815 T A RORC 3'UTR 0.39 TCGA-MN-A4N5-01 1 152770563 152770563 G T LCE1D Missense_Mutation p.G98V 0.20 unknown(0) TCGA-MN-A4N5-01 1 153346375 153346375 G T S100A12 Silent p.V69V 0.17 TCGA-MN-A4N5-01 1 157771726 157771726 C A FCRL1 Missense_Mutation p.A289S 0.48 tolerated(0.29) benign(0.066) TCGA-MN-A4N5-01 1 158224989 158224989 C G CD1A Missense_Mutation p.D58E 0.33 tolerated(0.27) benign(0.038) TCGA-MN-A4N5-01 1 158576853 158576853 G A OR10Z1 Missense_Mutation p.V209I 0.10 tolerated(0.38) benign(0.006) TCGA-MN-A4N5-01 1 158590067 158590067 C A SPTA1 Nonsense_Mutation p.E2104* 0.44 TCGA-MN-A4N5-01 1 161682007 161682007 G T FCRLA Missense_Mutation p.Q284H 0.15 tolerated(0.12) benign(0.008) TCGA-MN-A4N5-01 1 16378257 16378257 G T CLCNKB Missense_Mutation p.E450D 0.32 tolerated(0.81) possibly_damaging(0.497) TCGA-MN-A4N5-01 1 165182917 165182917 G T LMX1A Missense_Mutation p.F210L 0.13 deleterious(0.01) benign(0.159) TCGA-MN-A4N5-01 1 167032843 167032843 G A GPA33 Nonsense_Mutation p.Q183* 0.14 TCGA-MN-A4N5-01 1 169677576 169677576 C A SELL Missense_Mutation p.A165S 0.46 tolerated(0.47) possibly_damaging(0.482) TCGA-MN-A4N5-01 1 169677577 169677577 C A SELL Missense_Mutation p.K164N 0.47 deleterious(0) probably_damaging(1) TCGA-MN-A4N5-01 1 17084254 17084254 G T MST1L RNA 0.05 TCGA-MN-A4N5-01 1 170952569 170952569 G T MROH9 Missense_Mutation p.G208V 0.08 tolerated(0.67) benign(0.006) TCGA-MN-A4N5-01 1 17570585 17570585 G A PADI1 Silent p.E613E 0.21 TCGA-MN-A4N5-01 1 176526234 176526234 G T PAPPA2 Missense_Mutation p.G259V 0.07 tolerated(0.05) possibly_damaging(0.655) TCGA-MN-A4N5-01 1 176659474 176659474 G C PAPPA2 Missense_Mutation p.S780T 0.06 tolerated(0.29) possibly_damaging(0.794) TCGA-MN-A4N5-01 1 176838098 176838098 A T ASTN1 Missense_Mutation p.Y1177N 0.39 deleterious(0) probably_damaging(0.995) TCGA-MN-A4N5-01 1 177911136 177911136 C T SEC16B Missense_Mutation p.G641S 0.12 deleterious(0) probably_damaging(1) TCGA-MN-A4N5-01 1 181764058 181764058 C T CACNA1E Missense_Mutation p.S2029L 0.13 tolerated(0.57) possibly_damaging(0.693) TCGA-MN-A4N5-01 1 182025429 182025429 G T ZNF648 3'UTR 0.40 TCGA-MN-A4N5-01 1 19468000 19468000 C A UBR4 Nonsense_Mutation p.E2777* 0.14 TCGA-MN-A4N5-01 1 19468001 19468001 C A UBR4 Silent p.L2776L 0.14 TCGA-MN-A4N5-01 1 197071303 197071303 C A ASPM Missense_Mutation p.A2360S 0.13 deleterious(0.03) probably_damaging(0.999) TCGA-MN-A4N5-01 1 204394102 204394102 C A PIK3C2B Nonsense_Mutation p.E1595* 0.36 TCGA-MN-A4N5-01 1 207966929 207966929 G A CD46 Missense_Mutation p.R398K 0.22 tolerated_low_confidence(0.37) benign(0.002) TCGA-MN-A4N5-01 1 215345380 215345380 C A KCNK2 Missense_Mutation p.T226K 0.17 deleterious(0) probably_damaging(0.987) TCGA-MN-A4N5-01 1 21548312 21548312 C G ECE1 Missense_Mutation p.K688N 0.32 tolerated(0.05) benign(0.024) TCGA-MN-A4N5-01 1 215802194 215802194 A G USH2A Missense_Mutation p.S5161P 0.15 benign(0.073) TCGA-MN-A4N5-01 1 216251619 216251619 T A USH2A Missense_Mutation p.Y1795F 0.46 probably_damaging(0.944) TCGA-MN-A4N5-01 1 216260141 216260141 C T USH2A Missense_Mutation p.G1636D 0.07 probably_damaging(0.998) TCGA-MN-A4N5-01 1 217856598 217856598 A T SPATA17 Splice_Site p.X98_splice 0.12 TCGA-MN-A4N5-01 1 22157517 22157517 C A HSPG2 Missense_Mutation p.G3877W 0.30 probably_damaging(0.983) TCGA-MN-A4N5-01 1 222742974 222742974 C G TAF1A Missense_Mutation p.E258Q 0.09 tolerated(0.64) benign(0.223) TCGA-MN-A4N5-01 1 233802555 233802555 C T KCNK1 Silent p.V190V 0.09 TCGA-MN-A4N5-01 1 234367440 234367440 G A SLC35F3 Silent p.G187G 0.13 TCGA-MN-A4N5-01 1 235909637 235909637 T G LYST Missense_Mutation p.Q2657H 0.08 tolerated(0.21) probably_damaging(0.928) TCGA-MN-A4N5-01 1 244218390 244218390 G A ZBTB18 Silent p.E438E 0.08 TCGA-MN-A4N5-01 1 247588649 247588649 A T NLRP3 Missense_Mutation p.Y635F 0.51 tolerated(0.06) benign(0.076) TCGA-MN-A4N5-01 1 247695733 247695733 G T OR2C3 Silent p.V27V 0.42 TCGA-MN-A4N5-01 1 247752154 247752154 C G OR2G2 Missense_Mutation p.L165V 0.41 tolerated(0.11) possibly_damaging(0.803) TCGA-MN-A4N5-01 1 248039374 248039374 G T TRIM58 Missense_Mutation p.W348C 0.12 deleterious(0) probably_damaging(1) TCGA-MN-A4N5-01 1 248039810 248039810 C G TRIM58 3'UTR 0.07 TCGA-MN-A4N5-01 1 248487293 248487293 G A OR2M7 Missense_Mutation p.S193L 0.19 tolerated(0.1) benign(0.03) TCGA-MN-A4N5-01 1 248616540 248616540 G T OR2T2 Missense_Mutation p.G148C 0.17 deleterious(0.01) probably_damaging(0.943) TCGA-MN-A4N5-01 1 248685090 248685090 T C OR2G6 Missense_Mutation p.V48A 0.45 tolerated(0.08) benign(0.071) TCGA-MN-A4N5-01 1 248722660 248722660 C T OR2T29 Missense_Mutation p.G45R 0.15 deleterious(0.01) benign(0.03) TCGA-MN-A4N5-01 1 248738039 248738039 G T OR2T34 Missense_Mutation p.T7N 0.05 tolerated(0.27) benign(0.003) TCGA-MN-A4N5-01 1 38483327 38483327 A T UTP11L Intron 0.16 TCGA-MN-A4N5-01 1 39851595 39851595 C T MACF1 Missense_Mutation p.L2718F 0.37 probably_damaging(0.986) TCGA-MN-A4N5-01 1 42048440 42048441 - A HIVEP3 Frame_Shift_Ins p.A677Cfs*10 0.20 TCGA-MN-A4N5-01 1 47685802 47685802 C T TAL1 Missense_Mutation p.E196K 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-MN-A4N5-01 1 57480937 57480937 G C DAB1 Missense_Mutation p.P355A 0.21 tolerated(0.79) benign(0.005) TCGA-MN-A4N5-01 1 70504759 70504759 G T LRRC7 Missense_Mutation p.K1046N 0.16 tolerated(0.07) possibly_damaging(0.859) TCGA-MN-A4N5-01 1 75766357 75766357 C A SLC44A5 Missense_Mutation p.V39F 0.18 deleterious(0.03) benign(0.077) TCGA-MN-A4N5-01 1 78433873 78433873 T C FUBP1 Missense_Mutation p.K76E 0.29 deleterious(0) probably_damaging(0.913) TCGA-MN-A4N5-01 1 78959097 78959097 A G PTGFR Silent p.T223T 0.30 TCGA-MN-A4N5-01 1 84399291 84399291 C A TTLL7 Missense_Mutation p.E349D 0.16 deleterious(0) probably_damaging(0.936) TCGA-MN-A4N5-01 1 89585971 89585971 C A GBP2 Missense_Mutation p.G107C 0.22 deleterious(0) possibly_damaging(0.649) TCGA-MN-A4N5-01 1 94670650 94670650 T C ARHGAP29 Missense_Mutation p.I222V 0.25 tolerated(0.44) benign(0.114) TCGA-MN-A4N5-01 20 10622435 10622435 G A JAG1 Missense_Mutation p.S893L 0.10 deleterious(0.04) benign(0.114) TCGA-MN-A4N5-01 20 13846030 13846030 A G SEL1L2 Intron 0.22 TCGA-MN-A4N5-01 20 13846064 13846064 G C SEL1L2 Intron 0.27 TCGA-MN-A4N5-01 20 18377163 18377163 C T DZANK1 Missense_Mutation p.G522S 0.19 tolerated(0.06) probably_damaging(0.967) TCGA-MN-A4N5-01 20 21695332 21695332 C A PAX1 Missense_Mutation p.P499Q 0.25 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-MN-A4N5-01 20 23966569 23966569 C A GGTLC1 Missense_Mutation p.G116V 0.25 deleterious(0) possibly_damaging(0.616) TCGA-MN-A4N5-01 20 29956487 29956487 G A DEFB118 Missense_Mutation p.V12M 0.44 deleterious(0.04) unknown(0) TCGA-MN-A4N5-01 20 40126116 40126116 T A CHD6 Missense_Mutation p.T334S 0.32 tolerated(0.13) possibly_damaging(0.826) TCGA-MN-A4N5-01 20 42328565 42328565 G C MYBL2 Missense_Mutation p.D278H 0.23 tolerated(0.07) benign(0.27) TCGA-MN-A4N5-01 20 46279894 46279894 C G NCOA3 Missense_Mutation p.Q1274E 0.31 tolerated(0.11) possibly_damaging(0.491) TCGA-MN-A4N5-01 20 47589794 47589794 A G ARFGEF2 Silent p.G546G 0.22 TCGA-MN-A4N5-01 20 48129704 48129704 T A PTGIS Silent p.R373R 0.24 TCGA-MN-A4N5-01 20 50781235 50781235 C A ZFP64 Silent p.T170T 0.23 TCGA-MN-A4N5-01 20 53259999 53259999 C A DOK5 Silent p.L246L 0.18 TCGA-MN-A4N5-01 20 57876509 57876509 G T EDN3 Missense_Mutation p.V33L 0.21 tolerated(0.63) benign(0.008) TCGA-MN-A4N5-01 20 5903217 5903217 C A CHGB Missense_Mutation p.P143T 0.36 tolerated(0.17) benign(0.222) TCGA-MN-A4N5-01 20 5903218 5903218 C A CHGB Missense_Mutation p.P143H 0.36 deleterious(0.03) probably_damaging(0.951) TCGA-MN-A4N5-01 20 61386213 61386213 C A NTSR1 Silent p.A297A 0.31 TCGA-MN-A4N5-01 20 62172701 62172701 C A SRMS Splice_Site p.X377_splice 0.18 TCGA-MN-A4N5-01 20 9417672 9417672 T A PLCB4 Missense_Mutation p.S867R 0.13 tolerated(0.15) benign(0.068) TCGA-MN-A4N5-01 21 32492963 32492963 T C TIAM1 Missense_Mutation p.K1500R 0.54 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N5-01 21 39087298 39087298 C A KCNJ6 Missense_Mutation p.Q54H 0.49 deleterious(0.05) possibly_damaging(0.887) TCGA-MN-A4N5-01 21 41684179 41684179 G T DSCAM Missense_Mutation p.Q631K 0.57 tolerated(0.39) benign(0.145) TCGA-MN-A4N5-01 21 45820197 45820197 G T TRPM2 Missense_Mutation p.R755L 0.45 deleterious(0.01) possibly_damaging(0.828) TCGA-MN-A4N5-01 21 46057540 46057540 C A KRTAP10-10 Missense_Mutation p.S69Y 0.66 deleterious(0.01) benign(0.043) TCGA-MN-A4N5-01 21 47549271 47549271 G T COL6A2 Intron 0.65 TCGA-MN-A4N5-01 22 17443701 17443701 G T GAB4 Silent p.T549T 0.29 TCGA-MN-A4N5-01 22 32242824 32242824 G C DEPDC5 Missense_Mutation p.G1000A 0.27 tolerated(0.08) benign(0.1) TCGA-MN-A4N5-01 22 39884250 39884250 G T MGAT3 Missense_Mutation p.G300C 0.35 deleterious(0) probably_damaging(0.983) TCGA-MN-A4N5-01 22 40059774 40059774 C A CACNA1I Silent p.V1175V 0.44 TCGA-MN-A4N5-01 22 40216998 40216998 C A ENTHD1 Missense_Mutation p.D278Y 0.20 deleterious(0) possibly_damaging(0.885) TCGA-MN-A4N5-01 22 42564737 42564737 G A TCF20 Silent p.P1935P 0.36 TCGA-MN-A4N5-01 2 101192951 101192951 G T PDCL3 Missense_Mutation p.G238V 0.30 tolerated(0.21) benign(0.172) TCGA-MN-A4N5-01 2 102992364 102992364 C A IL18R1 Intron 0.17 TCGA-MN-A4N5-01 2 108618413 108618413 G T SLC5A7 Missense_Mutation p.V220L 0.16 tolerated(0.43) benign(0.001) TCGA-MN-A4N5-01 2 112779855 112779855 G T MERTK Missense_Mutation p.M790I 0.19 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N5-01 2 112922727 112922727 G T FBLN7 Missense_Mutation p.G129W 0.25 deleterious(0.01) probably_damaging(0.99) TCGA-MN-A4N5-01 2 113885161 113885161 G T IL1RN Intron 0.15 TCGA-MN-A4N5-01 2 130911948 130911948 C T SMPD4 Missense_Mutation p.V560I 0.21 tolerated(0.49) possibly_damaging(0.621) TCGA-MN-A4N5-01 2 130911949 130911949 C G SMPD4 Silent p.A559A 0.17 TCGA-MN-A4N5-01 2 155115579 155115579 C T GALNT13 Silent p.Y301Y 0.25 TCGA-MN-A4N5-01 2 15523359 15523359 C G NBAS Missense_Mutation p.D1114H 0.17 tolerated(0.1) possibly_damaging(0.841) TCGA-MN-A4N5-01 2 155555495 155555495 G T KCNJ3 Missense_Mutation p.D70Y 0.22 deleterious(0) possibly_damaging(0.853) TCGA-MN-A4N5-01 2 158275081 158275081 C A CYTIP Missense_Mutation p.W189C 0.05 deleterious(0.01) possibly_damaging(0.711) TCGA-MN-A4N5-01 2 1653209 1653209 G T PXDN Silent p.I781I 0.33 TCGA-MN-A4N5-01 2 168100393 168100393 G T XIRP2 Nonsense_Mutation p.E831* 0.31 TCGA-MN-A4N5-01 2 168104712 168104712 C G XIRP2 Silent p.S2270S 0.30 TCGA-MN-A4N5-01 2 170134345 170134345 C A LRP2 Missense_Mutation p.G561V 0.22 probably_damaging(0.999) TCGA-MN-A4N5-01 2 175260428 175260428 C A CIR1 5'UTR 0.26 TCGA-MN-A4N5-01 2 177017353 177017353 G C HOXD4 Missense_Mutation p.G151R 0.16 deleterious(0) probably_damaging(0.995) TCGA-MN-A4N5-01 2 179197661 179197661 C T OSBPL6 Nonsense_Mutation p.Q184* 0.15 TCGA-MN-A4N5-01 2 179422258 179422258 G A TTN Missense_Mutation p.P29244L 0.27 TCGA-MN-A4N5-01 2 179458856 179458856 T C TTN Missense_Mutation p.K19422E 0.17 TCGA-MN-A4N5-01 2 179579216 179579216 G A TTN Missense_Mutation p.A8762V 0.23 TCGA-MN-A4N5-01 2 182783514 182783514 G T SSFA2 Silent p.R966R 0.32 TCGA-MN-A4N5-01 2 187627367 187627367 A T FAM171B Silent p.G766G 0.27 TCGA-MN-A4N5-01 2 197584323 197584323 G T CCDC150 Missense_Mutation p.A700S 0.19 tolerated(0.13) possibly_damaging(0.547) TCGA-MN-A4N5-01 2 21225606 21225606 G T APOB Missense_Mutation p.Q4230K 0.23 benign(0.023) TCGA-MN-A4N5-01 2 212522711 212522711 C A ERBB4 Intron 0.18 TCGA-MN-A4N5-01 2 215645577 215645577 G C BARD1 Missense_Mutation p.L341V 0.11 tolerated(0.32) benign(0.003) TCGA-MN-A4N5-01 2 219754831 219754831 G T WNT10A Nonsense_Mutation p.E168* 0.22 TCGA-MN-A4N5-01 2 220329240 220329240 G T SPEG Missense_Mutation p.A931S 0.20 possibly_damaging(0.627) TCGA-MN-A4N5-01 2 222322690 222322690 C A EPHA4 Missense_Mutation p.V447F 0.17 deleterious(0) benign(0.078) TCGA-MN-A4N5-01 2 224760284 224760284 T C WDFY1 Missense_Mutation p.N221S 0.26 deleterious(0.02) benign(0.04) TCGA-MN-A4N5-01 2 225362566 225362566 C G CUL3 Missense_Mutation p.R537S 0.25 tolerated(1) benign(0.01) TCGA-MN-A4N5-01 2 228476250 228476250 C A C2orf83 Missense_Mutation p.A105S 0.26 deleterious_low_confidence(0) benign(0.364) TCGA-MN-A4N5-01 2 242577114 242577114 C T ATG4B 5'UTR 0.25 TCGA-MN-A4N5-01 2 31189121 31189121 A T GALNT14 Missense_Mutation p.I121N 0.17 deleterious(0) probably_damaging(0.931) TCGA-MN-A4N5-01 2 53992517 53992517 C A ASB3 Missense_Mutation p.A100S 0.23 tolerated(0.15) benign(0.192) TCGA-MN-A4N5-01 2 54873547 54873547 G C SPTBN1 Missense_Mutation p.A1601P 0.21 deleterious(0.01) possibly_damaging(0.704) TCGA-MN-A4N5-01 2 60688017 60688017 C - BCL11A Frame_Shift_Del p.G677Efs*113 0.23 TCGA-MN-A4N5-01 2 68882274 68882274 C A PROKR1 Missense_Mutation p.L250M 0.24 tolerated(0.18) benign(0.411) TCGA-MN-A4N5-01 2 73172101 73172101 C A SFXN5 3'UTR 0.33 TCGA-MN-A4N5-01 2 73678467 73678468 - A ALMS1 Frame_Shift_Ins p.T1607Dfs*2 0.11 TCGA-MN-A4N5-01 2 74307623 74307623 A G TET3 Splice_Site p.X727_splice 0.17 TCGA-MN-A4N5-01 2 80529344 80529344 G T LRRTM1 3'UTR 0.09 TCGA-MN-A4N5-01 2 89475825 89475825 G T IGKV2-24 Missense_Mutation p.A116D 0.26 tolerated(0.29) benign(0.004) TCGA-MN-A4N5-01 2 90044322 90044322 T C IGKV2D-24 Silent p.S81S 0.21 TCGA-MN-A4N5-01 2 90153787 90153787 C T IGKV3D-15 Missense_Mutation p.L15F 0.22 tolerated(0.19) probably_damaging(0.932) TCGA-MN-A4N5-01 2 96950132 96950132 C A SNRNP200 Silent p.V1452V 0.20 TCGA-MN-A4N5-01 2 99725413 99725413 T C TSGA10 Silent p.R31R 0.24 TCGA-MN-A4N5-01 3 108163735 108163735 G T MYH15 Missense_Mutation p.L823I 0.14 tolerated(0.54) benign(0.015) TCGA-MN-A4N5-01 3 10885953 10885953 G T SLC6A11 Missense_Mutation p.W226C 0.39 deleterious(0) possibly_damaging(0.882) TCGA-MN-A4N5-01 3 126190819 126190819 C A ZXDC Missense_Mutation p.R379I 0.12 tolerated(0.05) benign(0.391) TCGA-MN-A4N5-01 3 130363832 130363832 C A COL6A6 Intron 0.28 TCGA-MN-A4N5-01 3 145794590 145794590 C G PLOD2 Missense_Mutation p.W552C 0.41 deleterious(0) probably_damaging(0.947) TCGA-MN-A4N5-01 3 15720997 15720997 T A ANKRD28 Silent p.P791P 0.48 TCGA-MN-A4N5-01 3 164906382 164906382 G T SLITRK3 Missense_Mutation p.P746Q 0.18 deleterious(0) probably_damaging(0.941) TCGA-MN-A4N5-01 3 17425455 17425455 C A TBC1D5 Missense_Mutation p.D188Y 0.44 deleterious(0) probably_damaging(0.997) TCGA-MN-A4N5-01 3 178976866 178976866 C T LRRFIP1P1 RNA 0.15 TCGA-MN-A4N5-01 3 183474377 183474377 C T YEATS2 Silent p.V484V 0.12 TCGA-MN-A4N5-01 3 183873398 183873398 G T DVL3 5'UTR 0.33 TCGA-MN-A4N5-01 3 183960437 183960437 G A ALG3 Silent p.L394L 0.12 TCGA-MN-A4N5-01 3 187440292 187440292 C T BCL6 Missense_Mutation p.R692H 0.16 deleterious(0) possibly_damaging(0.568) TCGA-MN-A4N5-01 3 193375013 193375013 G A OPA1 Missense_Mutation p.D757N 0.21 tolerated(0.09) benign(0.224) TCGA-MN-A4N5-01 3 194081214 194081214 G A LRRC15 Missense_Mutation p.H193Y 0.10 tolerated(0.42) benign(0.003) TCGA-MN-A4N5-01 3 196674691 196674698 GGCACCCA - PIGZ Frame_Shift_Del p.L357Pfs*26 0.28 TCGA-MN-A4N5-01 3 24138614 24138614 C T LINC00691 RNA 0.52 TCGA-MN-A4N5-01 3 25650682 25650682 C A TOP2B Missense_Mutation p.R1357I 0.31 deleterious(0) possibly_damaging(0.684) TCGA-MN-A4N5-01 3 40351427 40351427 T C EIF1B 5'UTR 0.31 TCGA-MN-A4N5-01 3 431143 431143 A T CHL1 Missense_Mutation p.Y819F 0.30 deleterious(0.01) probably_damaging(0.934) TCGA-MN-A4N5-01 3 49689964 49689964 C G BSN Missense_Mutation p.S992W 0.21 unknown(0) TCGA-MN-A4N5-01 3 86115940 86115940 G T CADM2 3'Flank 0.32 TCGA-MN-A4N5-01 3 98001735 98001735 T G OR5H2 Missense_Mutation p.S2A 0.33 tolerated_low_confidence(0.06) benign(0.066) TCGA-MN-A4N5-01 3 9956202 9956202 T C IL17RE Intron 0.06 TCGA-MN-A4N5-01 4 100540220 100540220 G T MTTP Missense_Mutation p.L769F 0.19 tolerated(0.05) probably_damaging(0.997) TCGA-MN-A4N5-01 4 10099480 10099480 G A WDR1 Missense_Mutation p.S138F 0.09 deleterious(0) possibly_damaging(0.851) TCGA-MN-A4N5-01 4 101947159 101947159 C A PPP3CA Missense_Mutation p.D477Y 0.22 deleterious(0) probably_damaging(0.968) TCGA-MN-A4N5-01 4 104101486 104101486 C A CENPE Silent p.T408T 0.18 TCGA-MN-A4N5-01 4 110925712 110925712 C A EGF Missense_Mutation p.S1075R 0.25 tolerated(0.46) benign(0.036) TCGA-MN-A4N5-01 4 113553125 113553125 C - C4orf21 Frame_Shift_Del p.W21Cfs*6 0.16 TCGA-MN-A4N5-01 4 114277008 114277008 G T ANK2 Missense_Mutation p.A2412S 0.26 benign(0.008) TCGA-MN-A4N5-01 4 119252906 119252906 G T PRSS12 Silent p.A312A 0.30 TCGA-MN-A4N5-01 4 119952986 119952986 T A SYNPO2 Missense_Mutation p.V1019E 0.22 tolerated(0.23) benign(0.018) TCGA-MN-A4N5-01 4 121706218 121706218 C A PRDM5 Missense_Mutation p.C406F 0.25 deleterious(0) probably_damaging(0.982) TCGA-MN-A4N5-01 4 123113463 123113463 A G KIAA1109 Silent p.P327P 0.19 TCGA-MN-A4N5-01 4 13616969 13616969 C A BOD1L1 Missense_Mutation p.D176Y 0.23 probably_damaging(0.935) TCGA-MN-A4N5-01 4 138442386 138442386 A G PCDH18 Missense_Mutation p.C1069R 0.33 tolerated(0.35) benign(0) TCGA-MN-A4N5-01 4 155155618 155155618 G T DCHS2 3'UTR 0.60 TCGA-MN-A4N5-01 4 155156083 155156083 C G DCHS2 Missense_Mutation p.E2786Q 0.38 deleterious(0.02) possibly_damaging(0.685) TCGA-MN-A4N5-01 4 170912532 170912532 G C MFAP3L Silent p.V409V 0.28 TCGA-MN-A4N5-01 4 183710441 183710441 C T TENM3 Nonsense_Mutation p.R1834* 0.27 TCGA-MN-A4N5-01 4 188924605 188924605 G T ZFP42 Missense_Mutation p.R215L 0.32 deleterious(0) probably_damaging(0.996) TCGA-MN-A4N5-01 4 189012499 189012499 C A TRIML2 3'UTR 0.46 TCGA-MN-A4N5-01 4 189012654 189012654 G T TRIML2 Missense_Mutation p.S346Y 0.35 deleterious(0.04) probably_damaging(0.972) TCGA-MN-A4N5-01 4 20591313 20591313 C A SLIT2 Missense_Mutation p.N1045K 0.13 deleterious(0.01) possibly_damaging(0.814) TCGA-MN-A4N5-01 4 2230726 2230726 G C HAUS3 3'UTR 0.24 TCGA-MN-A4N5-01 4 22415260 22415260 G C GPR125 Missense_Mutation p.R663G 0.22 deleterious(0) possibly_damaging(0.899) TCGA-MN-A4N5-01 4 30725602 30725602 T A PCDH7 Missense_Mutation p.I853K 0.28 deleterious(0) benign(0.417) TCGA-MN-A4N5-01 4 38995480 38995480 C A TMEM156 Missense_Mutation p.G166V 0.25 deleterious(0.03) benign(0.299) TCGA-MN-A4N5-01 4 38995481 38995481 C A TMEM156 Nonsense_Mutation p.G166* 0.25 TCGA-MN-A4N5-01 4 44176787 44176787 C T KCTD8 3'UTR 0.27 TCGA-MN-A4N5-01 4 46967193 46967193 A T GABRA4 Missense_Mutation p.L310M 0.28 deleterious(0) probably_damaging(1) TCGA-MN-A4N5-01 4 5053597 5053597 G T STK32B Missense_Mutation p.G3W 0.22 deleterious(0.02) possibly_damaging(0.571) TCGA-MN-A4N5-01 4 53379 53379 G T ZNF595 5'UTR 0.06 TCGA-MN-A4N5-01 4 54257623 54257623 A T FIP1L1 Silent p.T221T 0.41 TCGA-MN-A4N5-01 4 56344980 56344980 A G CLOCK Splice_Site p.X86_splice 0.18 TCGA-MN-A4N5-01 4 57344756 57344756 A T SRP72 Splice_Site p.X256_splice 0.23 TCGA-MN-A4N5-01 4 5758009 5758009 G T EVC Nonsense_Mutation p.E495* 0.17 TCGA-MN-A4N5-01 4 661735 661735 G A PDE6B Missense_Mutation p.E815K 0.04 deleterious(0.01) benign(0.242) TCGA-MN-A4N5-01 4 70455092 70455092 A - UGT2A1 Frame_Shift_Del p.*694R 0.18 TCGA-MN-A4N5-01 4 70715267 70715267 G T SULT1E1 Nonsense_Mutation p.C128* 0.22 TCGA-MN-A4N5-01 4 73012740 73012740 G T NPFFR2 Missense_Mutation p.K260N 0.27 tolerated(0.13) benign(0.056) TCGA-MN-A4N5-01 4 85729569 85729569 G A WDFY3 Missense_Mutation p.R783C 0.09 deleterious(0.01) benign(0.003) TCGA-MN-A4N5-01 4 8602999 8602999 G - CPZ Frame_Shift_Del p.G91Afs*107 0.12 TCGA-MN-A4N5-01 4 90168838 90168838 T A GPRIN3 3'UTR 0.09 TCGA-MN-A4N5-01 4 90848962 90848962 G T MMRN1 Missense_Mutation p.M324I 0.14 tolerated(0.06) benign(0.006) TCGA-MN-A4N5-01 4 90874479 90874479 G T MMRN1 Missense_Mutation p.Q1199H 0.26 deleterious(0) probably_damaging(1) TCGA-MN-A4N5-01 4 94128588 94128588 C A GRID2 Missense_Mutation p.H257N 0.31 tolerated(0.1) benign(0.222) TCGA-MN-A4N5-01 5 101816130 101816130 A G SLCO6A1 Missense_Mutation p.F123L 0.18 tolerated(0.12) benign(0.269) TCGA-MN-A4N5-01 5 1052411 1052411 C A SLC12A7 3'UTR 0.47 TCGA-MN-A4N5-01 5 127800477 127800477 C T FBN2 Missense_Mutation p.A256T 0.10 tolerated(0.05) probably_damaging(0.945) TCGA-MN-A4N5-01 5 129521095 129521095 G C CHSY3 Missense_Mutation p.V754L 0.15 tolerated(0.1) benign(0.05) TCGA-MN-A4N5-01 5 139193008 139193008 C T PSD2 Silent p.D162D 0.15 TCGA-MN-A4N5-01 5 140432971 140432971 A C PCDHB1 Missense_Mutation p.Q639P 0.30 deleterious(0) possibly_damaging(0.56) TCGA-MN-A4N5-01 5 140502591 140502591 G T PCDHB4 Silent p.V337V 0.12 TCGA-MN-A4N5-01 5 140503755 140503755 G T PCDHB4 Silent p.S725S 0.26 TCGA-MN-A4N5-01 5 140625958 140625958 C A PCDHB15 Missense_Mutation p.T271N 0.07 deleterious_low_confidence(0.01) benign(0.189) TCGA-MN-A4N5-01 5 140711007 140711007 C A PCDHGA1 Silent p.P252P 0.23 TCGA-MN-A4N5-01 5 140720281 140720281 C A PCDHGA2 Silent p.S581S 0.29 TCGA-MN-A4N5-01 5 140739820 140739820 G T PCDHGB2 Nonsense_Mutation p.E40* 0.08 TCGA-MN-A4N5-01 5 140744961 140744961 C A PCDHGA5 Nonsense_Mutation p.S355* 0.21 TCGA-MN-A4N5-01 5 140750090 140750090 G T PCDHGB3 Missense_Mutation p.R43S 0.11 deleterious(0.01) benign(0.109) TCGA-MN-A4N5-01 5 140764433 140764433 C A PCDHGA7 Missense_Mutation p.A656D 0.11 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-MN-A4N5-01 5 14508097 14508097 G T TRIO Missense_Mutation p.G2954W 0.08 unknown(0) TCGA-MN-A4N5-01 5 150701753 150701753 A G SLC36A2 Missense_Mutation p.L345P 0.41 deleterious(0) probably_damaging(0.991) TCGA-MN-A4N5-01 5 154172338 154172338 G T LARP1 Missense_Mutation p.G164C 0.23 deleterious(0.01) possibly_damaging(0.73) TCGA-MN-A4N5-01 5 161116329 161116329 C G GABRA6 Silent p.L172L 0.24 TCGA-MN-A4N5-01 5 167379775 167379775 G T TENM2 Missense_Mutation p.V299F 0.23 deleterious(0) probably_damaging(1) TCGA-MN-A4N5-01 5 167645728 167645728 G C TENM2 Missense_Mutation p.G1611A 0.38 deleterious(0) possibly_damaging(0.881) TCGA-MN-A4N5-01 5 170814838 170814838 C A NPM1 5'UTR 0.17 TCGA-MN-A4N5-01 5 172750395 172750395 G A STC2 Silent p.A111A 0.19 TCGA-MN-A4N5-01 5 175582018 175582018 C A RP11-844P9.2 RNA 0.30 TCGA-MN-A4N5-01 5 176793205 176793205 G T RGS14 Missense_Mutation p.G32V 0.32 tolerated(0.23) benign(0.282) TCGA-MN-A4N5-01 5 179467604 179467604 G A RNF130 Silent p.V97V 0.33 TCGA-MN-A4N5-01 5 179467605 179467605 A C RNF130 Missense_Mutation p.V97G 0.33 tolerated(0.05) possibly_damaging(0.575) TCGA-MN-A4N5-01 5 21751801 21751801 T C CDH12 3'UTR 0.27 TCGA-MN-A4N5-01 5 21802410 21802410 G T CDH12 Missense_Mutation p.S374R 0.47 tolerated(0.23) benign(0.074) TCGA-MN-A4N5-01 5 24487836 24487837 - T CDH10 Nonsense_Mutation p.W768* 0.30 TCGA-MN-A4N5-01 5 24488122 24488122 C A CDH10 Missense_Mutation p.G673C 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-MN-A4N5-01 5 24488174 24488174 C T CDH10 Silent p.V655V 0.10 TCGA-MN-A4N5-01 5 32263237 32263237 C T MTMR12 Missense_Mutation p.G232D 0.15 tolerated(0.08) benign(0.007) TCGA-MN-A4N5-01 5 32789509 32789509 T A AC026703.1 Translation_Start_Site p.M1? 0.49 benign(0.092) TCGA-MN-A4N5-01 5 33576254 33576254 G T ADAMTS12 Missense_Mutation p.L1293M 0.46 tolerated(0.05) probably_damaging(0.969) TCGA-MN-A4N5-01 5 35957301 35957301 C A UGT3A1 Missense_Mutation p.S355I 0.52 deleterious(0.02) benign(0.117) TCGA-MN-A4N5-01 5 39288988 39288988 C A C9 Missense_Mutation p.L494F 0.30 deleterious(0) probably_damaging(0.991) TCGA-MN-A4N5-01 5 66462888 66462888 G T MAST4 3'UTR 0.24 TCGA-MN-A4N5-01 5 7520907 7520907 G A ADCY2 Missense_Mutation p.M155I 0.46 deleterious(0.05) benign(0.206) TCGA-MN-A4N5-01 5 75950036 75950036 G A IQGAP2 Nonsense_Mutation p.W730* 0.18 TCGA-MN-A4N5-01 5 79030116 79030116 C A CMYA5 Missense_Mutation p.S1843Y 0.14 benign(0) TCGA-MN-A4N5-01 5 79034733 79034733 A C CMYA5 Missense_Mutation p.E3382A 0.24 benign(0.132) TCGA-MN-A4N5-01 5 86686669 86686669 A G RASA1 Missense_Mutation p.N1038S 0.12 tolerated(0.73) benign(0.001) TCGA-MN-A4N5-01 5 896837 896837 G A TRIP13 Missense_Mutation p.G106S 0.44 tolerated(0.1) benign(0.141) TCGA-MN-A4N5-01 6 118635341 118635341 C T SLC35F1 Nonsense_Mutation p.Q385* 0.19 TCGA-MN-A4N5-01 6 129725054 129725054 G T LAMA2 Nonsense_Mutation p.E1939* 0.17 TCGA-MN-A4N5-01 6 130761975 130761975 C T TMEM200A Silent p.G136G 0.13 TCGA-MN-A4N5-01 6 132859775 132859775 G C TAAR9 Missense_Mutation p.C116S 0.08 deleterious(0.03) possibly_damaging(0.8) TCGA-MN-A4N5-01 6 132910162 132910162 T A TAAR5 Missense_Mutation p.I222F 0.23 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N5-01 6 138584447 138584447 T - KIAA1244 Frame_Shift_Del p.S610Pfs*28 0.17 TCGA-MN-A4N5-01 6 160903793 160903793 A T LPAL2 RNA 0.17 TCGA-MN-A4N5-01 6 165752815 165752815 A T PDE10A Silent p.P710P 0.11 TCGA-MN-A4N5-01 6 166733724 166733724 C G SFT2D1 Missense_Mutation p.C154S 0.18 deleterious(0.04) possibly_damaging(0.756) TCGA-MN-A4N5-01 6 169632179 169632179 C G THBS2 Missense_Mutation p.G683R 0.24 deleterious(0) probably_damaging(1) TCGA-MN-A4N5-01 6 17794831 17794831 T C KIF13A Missense_Mutation p.N1016S 0.22 tolerated(0.81) benign(0.1) TCGA-MN-A4N5-01 6 26123854 26123854 C A HIST1H2BC Missense_Mutation p.R93S 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.834) TCGA-MN-A4N5-01 6 26123855 26123855 C A HIST1H2BC Missense_Mutation p.R93M 0.18 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-MN-A4N5-01 6 29323504 29323504 C T OR5V1 Missense_Mutation p.V157M 0.18 tolerated(0.3) benign(0.029) TCGA-MN-A4N5-01 6 31610072 31610072 G C BAG6 Missense_Mutation p.P688A 0.19 tolerated(0.36) benign(0.068) TCGA-MN-A4N5-01 6 33560967 33560967 C A GGNBP1 3'Flank 0.40 TCGA-MN-A4N5-01 6 40399511 40399511 G A LRFN2 Missense_Mutation p.R448W 0.17 tolerated(0.08) possibly_damaging(0.892) TCGA-MN-A4N5-01 6 42833237 42833237 C T GLTSCR1L 3'UTR 0.31 TCGA-MN-A4N5-01 6 44310904 44310904 C T SPATS1 Silent p.C24C 0.06 TCGA-MN-A4N5-01 6 46656287 46656287 C A TDRD6 Missense_Mutation p.A141E 0.42 tolerated(0.31) possibly_damaging(0.447) TCGA-MN-A4N5-01 6 49585802 49585802 G T RHAG Nonsense_Mutation p.Y157* 0.27 TCGA-MN-A4N5-01 6 50805704 50805704 G - TFAP2B Frame_Shift_Del p.R282Dfs*7 0.20 TCGA-MN-A4N5-01 6 52615399 52615399 T A GSTA2 Missense_Mutation p.E215D 0.30 tolerated(0.28) benign(0.03) TCGA-MN-A4N5-01 6 6225017 6225017 G T F13A1 Missense_Mutation p.A292D 0.20 deleterious(0) probably_damaging(1) TCGA-MN-A4N5-01 6 70847628 70847628 A T COL19A1 Nonsense_Mutation p.K479* 0.16 TCGA-MN-A4N5-01 6 7576572 7576572 T C DSP Silent p.R892R 0.16 TCGA-MN-A4N5-01 6 7899862 7899862 C G TXNDC5 Missense_Mutation p.D156H 0.24 deleterious(0) probably_damaging(0.995) TCGA-MN-A4N5-01 6 80747683 80747683 G T TTK Splice_Site p.X684_splice 0.25 TCGA-MN-A4N5-01 6 90432747 90432747 C A MDN1 Missense_Mutation p.G1965V 0.17 probably_damaging(0.971) TCGA-MN-A4N5-01 6 90642556 90642556 C A BACH2 Missense_Mutation p.M699I 0.14 deleterious(0.01) possibly_damaging(0.612) TCGA-MN-A4N5-01 6 97063492 97063492 A C FHL5 Silent p.T233T 0.23 TCGA-MN-A4N5-01 7 100086358 100086358 G T NYAP1 Silent p.L338L 0.15 TCGA-MN-A4N5-01 7 100552935 100552935 G T MUC3A Missense_Mutation p.G527V 0.15 deleterious(0) probably_damaging(0.929) TCGA-MN-A4N5-01 7 112407404 112407404 A T TMEM168 Missense_Mutation p.Y648N 0.16 tolerated(0.13) benign(0.372) TCGA-MN-A4N5-01 7 1132176 1132176 G T GPER1 Missense_Mutation p.C271F 0.27 tolerated(0.13) probably_damaging(1) TCGA-MN-A4N5-01 7 123332590 123332590 C T WASL Silent p.P386P 0.12 TCGA-MN-A4N5-01 7 127224324 127224324 C T GCC1 Missense_Mutation p.E305K 0.16 tolerated(0.17) benign(0.063) TCGA-MN-A4N5-01 7 129914997 129914997 C T CPA2 Silent p.T165T 0.10 TCGA-MN-A4N5-01 7 130023612 130023612 G T CPA1 Missense_Mutation p.G225C 0.14 deleterious(0) probably_damaging(1) TCGA-MN-A4N5-01 7 131883374 131883374 G A PLXNA4 Missense_Mutation p.R870W 0.30 tolerated(0.07) probably_damaging(0.939) TCGA-MN-A4N5-01 7 136700293 136700293 C A CHRM2 Missense_Mutation p.N227K 0.14 tolerated(0.84) benign(0.009) TCGA-MN-A4N5-01 7 139820322 139820322 G T KDM7A Silent p.I353I 0.30 TCGA-MN-A4N5-01 7 142180678 142180678 C A TRBV6-5 Missense_Mutation p.G61W 0.19 deleterious(0) probably_damaging(1) TCGA-MN-A4N5-01 7 142232026 142232026 A C TRBV10-1 5'UTR 0.16 TCGA-MN-A4N5-01 7 142423636 142423636 G T TRBV27 Nonsense_Mutation p.E98* 0.28 TCGA-MN-A4N5-01 7 142638313 142638313 G A KEL 3'UTR 0.18 TCGA-MN-A4N5-01 7 143573544 143573544 G A FAM115A Missense_Mutation p.S53F 0.12 tolerated(0.48) benign(0.005) TCGA-MN-A4N5-01 7 148801537 148801537 C A ZNF425 Missense_Mutation p.G476C 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-MN-A4N5-01 7 149486273 149486273 G C SSPO RNA 0.20 TCGA-MN-A4N5-01 7 150768258 150768258 G T SLC4A2 Missense_Mutation p.V617L 0.26 tolerated(0.17) benign(0.039) TCGA-MN-A4N5-01 7 151921547 151921547 A G KMT2C Missense_Mutation p.V1044A 0.09 probably_damaging(0.999) TCGA-MN-A4N5-01 7 18624908 18624908 T A HDAC9 Missense_Mutation p.D9E 0.32 tolerated_low_confidence(0.17) benign(0.088) TCGA-MN-A4N5-01 7 31920385 31920385 C A PDE1C Nonsense_Mutation p.E133* 0.35 TCGA-MN-A4N5-01 7 33945158 33945158 A T BMPER 5'UTR 0.25 TCGA-MN-A4N5-01 7 39247170 39247170 A T POU6F2 Silent p.A154A 0.28 TCGA-MN-A4N5-01 7 43546757 43546757 G C HECW1 Missense_Mutation p.R1218T 0.09 tolerated(0.13) possibly_damaging(0.686) TCGA-MN-A4N5-01 7 45743065 45743065 T A ADCY1 Missense_Mutation p.F849I 0.34 deleterious(0) probably_damaging(0.999) TCGA-MN-A4N5-01 7 48312459 48312459 A T ABCA13 Nonsense_Mutation p.K1066* 0.24 TCGA-MN-A4N5-01 7 53103418 53103418 G T POM121L12 Silent p.A18A 0.44 TCGA-MN-A4N5-01 7 57193782 57193782 C G ZNF479 Missense_Mutation p.E69Q 0.20 deleterious(0.04) benign(0.38) TCGA-MN-A4N5-01 7 64004736 64004736 C A ZNF680 Silent p.R35R 0.12 TCGA-MN-A4N5-01 7 7413110 7413110 C A COL28A1 Silent p.V809V 0.20 TCGA-MN-A4N5-01 7 77885377 77885377 C T MAGI2 Missense_Mutation p.D644N 0.14 deleterious(0) probably_damaging(1) TCGA-MN-A4N5-01 7 87160609 87160609 C G ABCB1 Splice_Site p.X895_splice 0.16 TCGA-MN-A4N5-01 7 87369118 87369118 A C RUNDC3B Missense_Mutation p.E174A 0.19 tolerated(0.25) benign(0.007) TCGA-MN-A4N5-01 7 91625044 91625044 A G AKAP9 Missense_Mutation p.Y287C 0.24 probably_damaging(0.997) TCGA-MN-A4N5-01 7 93623571 93623572 - A BET1 Frame_Shift_Ins p.I110Yfs*7 0.23 TCGA-MN-A4N5-01 7 96279825 96279825 C G RP11-682N22.1 Intron 0.25 TCGA-MN-A4N5-01 7 97821707 97821707 G A LMTK2 Missense_Mutation p.D644N 0.17 deleterious(0.02) benign(0.258) TCGA-MN-A4N5-01 7 99798418 99798418 C A STAG3 Silent p.L629L 0.39 TCGA-MN-A4N5-01 8 10466539 10466539 T A RP1L1 Missense_Mutation p.Q1690L 0.22 unknown(0) TCGA-MN-A4N5-01 8 104897845 104897845 G T RIMS2 Missense_Mutation p.A340S 0.45 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-MN-A4N5-01 8 107782146 107782146 A T ABRA Missense_Mutation p.D91E 0.07 tolerated(0.31) benign(0.004) TCGA-MN-A4N5-01 8 108334164 108334164 G T ANGPT1 Missense_Mutation p.D256E 0.44 tolerated(1) benign(0.01) TCGA-MN-A4N5-01 8 113293468 113293468 G A CSMD3 Missense_Mutation p.S3148F 0.13 deleterious(0) possibly_damaging(0.616) TCGA-MN-A4N5-01 8 113585828 113585828 A G CSMD3 Missense_Mutation p.M1315T 0.50 deleterious(0.03) benign(0.328) TCGA-MN-A4N5-01 8 114448927 114448927 A T CSMD3 Missense_Mutation p.L53M 0.12 tolerated_low_confidence(0.16) benign(0.212) TCGA-MN-A4N5-01 8 119938900 119938900 G T TNFRSF11B Missense_Mutation p.P217H 0.48 deleterious(0) probably_damaging(0.99) TCGA-MN-A4N5-01 8 133984060 133984060 G A TG Silent p.R1999R 0.48 TCGA-MN-A4N5-01 8 143559658 143559658 G T BAI1 Missense_Mutation p.G500W 0.31 deleterious(0) probably_damaging(0.995) TCGA-MN-A4N5-01 8 144331914 144331914 G A ZFP41 5'UTR 0.41 TCGA-MN-A4N5-01 8 144991709 144991709 T C PLEC Missense_Mutation p.N4231D 0.36 probably_damaging(0.985) TCGA-MN-A4N5-01 8 18658841 18658841 T C PSD3 Silent p.R654R 0.22 TCGA-MN-A4N5-01 8 1873470 1873470 G A ARHGEF10 Nonsense_Mutation p.W837* 0.31 TCGA-MN-A4N5-01 8 3265596 3265596 C A CSMD1 Missense_Mutation p.E632D 0.17 probably_damaging(0.914) TCGA-MN-A4N5-01 8 38175409 38175409 C T WHSC1L1 Intron 0.35 TCGA-MN-A4N5-01 8 48743246 48743246 T C PRKDC Missense_Mutation p.R2772G 0.12 probably_damaging(1) TCGA-MN-A4N5-01 8 54142070 54142070 G T OPRK1 Silent p.S310S 0.13 TCGA-MN-A4N5-01 8 67012257 67012257 A G DNAJC5B Silent p.T197T 0.41 TCGA-MN-A4N5-01 8 7308259 7308259 C A SPAG11B Missense_Mutation p.E126D 0.29 deleterious_low_confidence(0.05) benign(0.011) TCGA-MN-A4N5-01 8 8185546 8185546 C A SGK223 Missense_Mutation p.A916S 0.26 benign(0.306) TCGA-MN-A4N5-01 8 86027748 86027748 C G LRRCC1 Missense_Mutation p.H287D 0.14 tolerated(0.21) benign(0.045) TCGA-MN-A4N5-01 8 99148943 99148943 T C POP1 Silent p.S415S 0.16 TCGA-MN-A4N5-01 9 106889692 106889692 G T SMC2 Missense_Mutation p.Q907H 0.66 tolerated(0.06) benign(0.033) TCGA-MN-A4N5-01 9 114140904 114140904 G C KIAA0368 Missense_Mutation p.Q1482E 0.12 tolerated(0.37) possibly_damaging(0.674) TCGA-MN-A4N5-01 9 131197999 131197999 G C CERCAM Missense_Mutation p.A535P 0.46 deleterious(0.01) benign(0.323) TCGA-MN-A4N5-01 9 132632799 132632799 G T USP20 Missense_Mutation p.A545S 0.47 tolerated(0.07) probably_damaging(0.967) TCGA-MN-A4N5-01 9 137808267 137808267 G T FCN1 Silent p.T48T 0.52 TCGA-MN-A4N5-01 9 139905665 139905665 A T ABCA2 Missense_Mutation p.Y1966N 0.27 deleterious(0.04) probably_damaging(1) TCGA-MN-A4N5-01 9 139905666 139905666 C T ABCA2 Silent p.E1965E 0.28 TCGA-MN-A4N5-01 9 140904459 140904459 C A CACNA1B Intron 0.60 TCGA-MN-A4N5-01 9 14776192 14776192 G A FREM1 Silent p.I1484I 0.14 TCGA-MN-A4N5-01 9 23701545 23701545 G A ELAVL2 Missense_Mutation p.A182V 0.38 deleterious(0) probably_damaging(0.995) TCGA-MN-A4N5-01 9 27169605 27169605 C A TEK Silent p.A202A 0.39 TCGA-MN-A4N5-01 9 34089569 34089569 G A DCAF12 Silent p.F348F 0.18 TCGA-MN-A4N5-01 X 112022847 112022847 T C AMOT Silent p.P845P 0.40 TCGA-MN-A4N5-01 X 122538599 122538599 T G GRIA3 Missense_Mutation p.L445R 0.16 deleterious(0.02) benign(0.148) TCGA-MN-A4N5-01 X 122830694 122830694 T A THOC2 Splice_Site p.X116_splice 0.12 TCGA-MN-A4N5-01 X 135956317 135956317 C A RBMX Missense_Mutation p.G387V 0.09 tolerated(0.23) unknown(0) TCGA-MN-A4N5-01 X 15315770 15315770 C A ASB11 Missense_Mutation p.V99L 0.21 deleterious(0) probably_damaging(0.997) TCGA-MN-A4N5-01 X 153695659 153695659 G A PLXNA3 Missense_Mutation p.E1096K 0.18 tolerated(0.18) possibly_damaging(0.454) TCGA-MN-A4N5-01 X 26213218 26213218 G A MAGEB6 3'UTR 0.28 TCGA-MN-A4N5-01 X 27998776 27998776 C A DCAF8L1 Missense_Mutation p.V226L 0.44 tolerated(0.17) benign(0.003) TCGA-MN-A4N5-01 X 3019199 3019199 G T ARSF Nonsense_Mutation p.G347* 0.15 TCGA-MN-A4N5-01 X 37028950 37028950 C A FAM47C Missense_Mutation p.H823N 0.31 deleterious(0.04) possibly_damaging(0.674) TCGA-MN-A4N5-01 X 41586834 41586834 C A GPR82 Missense_Mutation p.S185R 0.26 tolerated(0.49) benign(0.035) TCGA-MN-A4N5-01 X 49106113 49106113 A G CCDC22 Missense_Mutation p.N566S 0.08 tolerated(0.07) probably_damaging(0.951) TCGA-MN-A4N5-01 X 55052278 55052278 G T ALAS2 Missense_Mutation p.H52Q 0.43 tolerated(0.64) benign(0.139) TCGA-MN-A4N5-01 X 55052281 55052281 G C ALAS2 Missense_Mutation p.I51M 0.44 tolerated(0.08) possibly_damaging(0.738) TCGA-MN-A4N5-01 X 64708993 64708993 G A ZC3H12B Silent p.L104L 0.48 TCGA-MN-A4N5-01 X 70521717 70521717 C T ITGB1BP2 Missense_Mutation p.P21S 0.59 tolerated(0.32) benign(0.018) TCGA-MN-A4N5-01 X 77913325 77913325 T C ZCCHC5 Missense_Mutation p.Q198R 0.42 deleterious(0) possibly_damaging(0.469) TCGA-MN-A4N5-01 X 99596976 99596976 G T PCDH19 Missense_Mutation p.L925M 0.53 tolerated(0.22) possibly_damaging(0.781) TCGA-MP-A4SV-01 10 105350169 105350169 G A NEURL1 3'UTR 0.25 TCGA-MP-A4SV-01 10 116930952 116930952 A G ATRNL1 Missense_Mutation p.H417R 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-MP-A4SV-01 10 127708341 127708341 G T ADAM12 Silent p.A864A 0.37 TCGA-MP-A4SV-01 10 24833116 24833116 G A KIAA1217 Silent p.R1639R 0.12 TCGA-MP-A4SV-01 10 26465772 26465772 C T MYO3A Missense_Mutation p.S1479L 0.09 deleterious_low_confidence(0.01) benign(0.024) TCGA-MP-A4SV-01 10 45940992 45940992 G C ALOX5 Missense_Mutation p.E628Q 0.13 deleterious(0) probably_damaging(0.996) TCGA-MP-A4SV-01 10 53227522 53227522 G T PRKG1 Missense_Mutation p.C173F 0.08 tolerated(0.1) benign(0.129) TCGA-MP-A4SV-01 10 60154929 60154929 G T TFAM 3'UTR 0.29 TCGA-MP-A4SV-01 10 73039801 73039801 C T UNC5B Silent p.T101T 0.11 TCGA-MP-A4SV-01 10 76603121 76603121 G T KAT6B Missense_Mutation p.G169V 0.10 possibly_damaging(0.869) TCGA-MP-A4SV-01 10 76603141 76603141 T G KAT6B Missense_Mutation p.Y176D 0.10 possibly_damaging(0.632) TCGA-MP-A4SV-01 10 81053410 81053410 G A ZMIZ1 Silent p.E410E 0.06 TCGA-MP-A4SV-01 10 88761447 88761447 G C RP11-96C23.14 RNA 0.06 TCGA-MP-A4SV-01 10 88764085 88764085 G C RP11-96C23.14 RNA 0.05 TCGA-MP-A4SV-01 10 91404901 91404901 G T PANK1 Silent p.P53P 0.33 TCGA-MP-A4SV-01 10 91465055 91465055 G A KIF20B Missense_Mutation p.E2K 0.14 deleterious(0) probably_damaging(0.994) TCGA-MP-A4SV-01 10 93622785 93622785 G A TNKS2 3'UTR 0.19 TCGA-MP-A4SV-01 10 99139474 99139474 C A RRP12 Silent p.A529A 0.31 TCGA-MP-A4SV-01 11 104905202 104905202 C A CASP1 Splice_Site p.X3_splice 0.07 TCGA-MP-A4SV-01 11 105797466 105797466 G T GRIA4 Splice_Site p.X616_splice 0.20 TCGA-MP-A4SV-01 11 112089387 112089387 G T BCO2 3'UTR 0.12 TCGA-MP-A4SV-01 11 1606004 1606004 G A KRTAP5-1 Missense_Mutation p.S159F 0.09 deleterious_low_confidence(0) unknown(0) TCGA-MP-A4SV-01 11 17132110 17132110 T A PIK3C2A Splice_Site p.X1139_splice 0.15 TCGA-MP-A4SV-01 11 19864441 19864441 A C NAV2 Missense_Mutation p.N137T 0.11 deleterious(0) probably_damaging(0.994) TCGA-MP-A4SV-01 11 22248881 22248881 A C ANO5 Missense_Mutation p.I133L 0.04 tolerated(0.27) probably_damaging(0.969) TCGA-MP-A4SV-01 11 2433468 2433468 C T TRPM5 Missense_Mutation p.E791K 0.06 tolerated(0.53) benign(0.133) TCGA-MP-A4SV-01 11 281208 281208 G C NLRP6 Missense_Mutation p.E492Q 0.05 deleterious(0.01) possibly_damaging(0.886) TCGA-MP-A4SV-01 11 31284598 31284598 C T DCDC1 3'UTR 0.09 TCGA-MP-A4SV-01 11 4661484 4661484 C - OR51D1 Frame_Shift_Del p.K156Rfs*7 0.20 TCGA-MP-A4SV-01 11 46884215 46884215 A T LRP4 Missense_Mutation p.V1776E 0.28 deleterious(0) benign(0.328) TCGA-MP-A4SV-01 11 4869801 4869801 G T OR51S1 Missense_Mutation p.A213D 0.09 deleterious(0) possibly_damaging(0.635) TCGA-MP-A4SV-01 11 51515668 51515668 C A OR4C46 Missense_Mutation p.H129Q 0.15 deleterious_low_confidence(0.01) benign(0.191) TCGA-MP-A4SV-01 11 55135686 55135687 GA TAT OR4A15 Frame_Shift_Ins p.M109Ifs*4 0.15 TCGA-MP-A4SV-01 11 55432682 55432682 G A OR4C6 Missense_Mutation p.G14S 0.20 deleterious_low_confidence(0.02) benign(0.275) TCGA-MP-A4SV-01 11 56143344 56143344 T A OR8U1 Missense_Mutation p.L82H 0.25 deleterious(0) probably_damaging(0.966) TCGA-MP-A4SV-01 11 56143601 56143601 T G OR8U1 Missense_Mutation p.Y168D 0.08 deleterious(0) probably_damaging(0.984) TCGA-MP-A4SV-01 11 58170112 58170112 G C OR5B3 Nonsense_Mutation p.Y257* 0.24 TCGA-MP-A4SV-01 11 60070084 60070084 G T MS4A4A Missense_Mutation p.G147V 0.21 deleterious(0) possibly_damaging(0.896) TCGA-MP-A4SV-01 11 61015906 61015906 C A PGA5 Silent p.G224G 0.20 TCGA-MP-A4SV-01 11 61404333 61404333 C A RPLP0P2 RNA 0.24 TCGA-MP-A4SV-01 11 62289005 62289005 C A AHNAK Missense_Mutation p.G4295V 0.31 probably_damaging(1) TCGA-MP-A4SV-01 11 62381857 62381857 G C ROM1 Missense_Mutation p.D240H 0.07 deleterious(0) probably_damaging(0.987) TCGA-MP-A4SV-01 11 62381902 62381902 G A ROM1 Missense_Mutation p.E255K 0.07 tolerated(0.22) benign(0.179) TCGA-MP-A4SV-01 11 6453034 6453034 C A HPX Splice_Site p.X323_splice 0.06 TCGA-MP-A4SV-01 11 64953739 64953739 C T CAPN1 Missense_Mutation p.A230V 0.37 deleterious(0.03) benign(0.079) TCGA-MP-A4SV-01 11 66190200 66190200 A C NPAS4 Silent p.A162A 0.08 TCGA-MP-A4SV-01 11 66323653 66323653 C T CTD-3074O7.2 3'Flank 0.05 TCGA-MP-A4SV-01 11 66327497 66327497 C T CTSF 3'Flank 0.33 TCGA-MP-A4SV-01 11 66626438 66626438 C A LRFN4 Missense_Mutation p.A408D 0.24 tolerated(0.62) benign(0.139) TCGA-MP-A4SV-01 11 6867160 6867160 C T OR10A5 Silent p.L83L 0.33 TCGA-MP-A4SV-01 11 7950125 7950125 C A OR10A6 Missense_Mutation p.V29L 0.05 tolerated(0.65) benign(0.001) TCGA-MP-A4SV-01 12 101017696 101017696 T C GAS2L3 Silent p.S371S 0.31 TCGA-MP-A4SV-01 12 104458418 104458418 G C HCFC2 Missense_Mutation p.R27P 0.15 deleterious(0) benign(0.418) TCGA-MP-A4SV-01 12 120210636 120210636 C T CIT Missense_Mutation p.E674K 0.25 deleterious(0.02) possibly_damaging(0.761) TCGA-MP-A4SV-01 12 121206210 121206210 G C SPPL3 Missense_Mutation p.L231V 0.05 tolerated(1) benign(0.017) TCGA-MP-A4SV-01 12 122716619 122716619 A G VPS33A 3'UTR 0.31 TCGA-MP-A4SV-01 12 123801892 123801892 G A SBNO1 Silent p.I937I 0.09 TCGA-MP-A4SV-01 12 132528737 132528737 G T EP400 Missense_Mutation p.A2156S 0.23 unknown(0) TCGA-MP-A4SV-01 12 133358997 133358997 T C GOLGA3 Missense_Mutation p.E1117G 0.06 deleterious(0) probably_damaging(0.999) TCGA-MP-A4SV-01 12 2022235 2022235 G A CACNA2D4 Missense_Mutation p.S127L 0.28 deleterious(0) benign(0.392) TCGA-MP-A4SV-01 12 21643161 21643161 A T RECQL Nonsense_Mutation p.C122* 0.24 TCGA-MP-A4SV-01 12 21997461 21997461 G T ABCC9 Missense_Mutation p.L1091M 0.12 deleterious(0.03) possibly_damaging(0.482) TCGA-MP-A4SV-01 12 26784835 26784835 C G ITPR2 Silent p.V966V 0.06 TCGA-MP-A4SV-01 12 29642559 29642559 G T OVCH1 Silent p.A232A 0.21 TCGA-MP-A4SV-01 12 30872148 30872148 G A CAPRIN2 Intron 0.12 TCGA-MP-A4SV-01 12 32858780 32858780 C G DNM1L Intron 0.08 TCGA-MP-A4SV-01 12 43777520 43777520 T C ADAMTS20 Silent p.S1546S 0.39 TCGA-MP-A4SV-01 12 49666960 49666960 G A TUBA1C Missense_Mutation p.E434K 0.10 deleterious_low_confidence(0.01) unknown(0) TCGA-MP-A4SV-01 12 52139713 52139713 G C SCN8A Missense_Mutation p.K675N 0.12 tolerated(0.07) benign(0.035) TCGA-MP-A4SV-01 12 53068972 53068972 T C KRT1 3'UTR 0.27 TCGA-MP-A4SV-01 12 53086232 53086232 C A KRT77 Missense_Mutation p.R467L 0.36 deleterious(0) benign(0.438) TCGA-MP-A4SV-01 12 53200974 53200974 C G KRT4 Missense_Mutation p.G481A 0.18 tolerated_low_confidence(0.08) unknown(0) TCGA-MP-A4SV-01 12 53876099 53876099 G T MAP3K12 Missense_Mutation p.L765M 0.05 tolerated_low_confidence(0.06) possibly_damaging(0.899) TCGA-MP-A4SV-01 12 56383883 56383883 G T RAB5B Splice_Site p.X105_splice 0.14 TCGA-MP-A4SV-01 12 57442099 57442099 G T MYO1A Silent p.L3L 0.19 TCGA-MP-A4SV-01 12 64061838 64061838 G A DPY19L2 Silent p.I112I 0.10 TCGA-MP-A4SV-01 12 6646140 6646140 G T GAPDH Missense_Mutation p.E97D 0.10 deleterious_low_confidence(0.02) benign(0.021) TCGA-MP-A4SV-01 12 7087520 7087520 G A LPCAT3 Silent p.T341T 0.05 TCGA-MP-A4SV-01 12 70963564 70963564 G A PTPRB Silent p.H1175H 0.08 TCGA-MP-A4SV-01 12 78513443 78513443 G A NAV3 Missense_Mutation p.R1156K 0.09 deleterious(0) probably_damaging(0.995) TCGA-MP-A4SV-01 12 8375360 8375360 C T FAM90A1 Silent p.P151P 0.11 TCGA-MP-A4SV-01 12 89744505 89744505 A T DUSP6 Missense_Mutation p.I233N 0.25 deleterious(0) probably_damaging(1) TCGA-MP-A4SV-01 12 9006759 9006759 G A A2ML1 Missense_Mutation p.D876N 0.15 tolerated(0.15) benign(0.009) TCGA-MP-A4SV-01 13 109438052 109438052 G C MYO16 Missense_Mutation p.E171Q 0.17 deleterious(0) probably_damaging(0.986) TCGA-MP-A4SV-01 13 113536242 113536242 C G ATP11A 3'UTR 0.07 TCGA-MP-A4SV-01 13 39600484 39600484 G C PROSER1 Missense_Mutation p.S137C 0.12 deleterious(0) probably_damaging(0.998) TCGA-MP-A4SV-01 13 41706138 41706138 C T KBTBD6 Silent p.L170L 0.09 TCGA-MP-A4SV-01 13 49089420 49089420 C G RCBTB2 Silent p.R90R 0.06 TCGA-MP-A4SV-01 13 49684458 49684458 C T FNDC3A Intron 0.12 TCGA-MP-A4SV-01 13 49684459 49684459 C T FNDC3A Intron 0.12 TCGA-MP-A4SV-01 13 53624181 53624181 C A OLFM4 Missense_Mutation p.L270I 0.18 deleterious(0.03) benign(0.006) TCGA-MP-A4SV-01 13 58299506 58299506 C G PCDH17 3'UTR 0.29 TCGA-MP-A4SV-01 13 77589595 77589595 C T FBXL3 Missense_Mutation p.D198N 0.12 tolerated(0.08) benign(0.261) TCGA-MP-A4SV-01 13 99462425 99462425 C G DOCK9 Missense_Mutation p.E1751Q 0.22 tolerated(0.19) probably_damaging(0.99) TCGA-MP-A4SV-01 14 100996353 100996353 G T WDR25 Missense_Mutation p.G537V 0.08 tolerated(0.08) benign(0.424) TCGA-MP-A4SV-01 14 106110430 106110430 A G IGHG2 Silent p.C102C 0.24 TCGA-MP-A4SV-01 14 107078510 107078510 C T IGHV1-58 Missense_Mutation p.V72I 0.23 benign(0.102) TCGA-MP-A4SV-01 14 19904383 19904383 C G BMS1P18 RNA 0.25 TCGA-MP-A4SV-01 14 20344899 20344899 G T OR4K2 Missense_Mutation p.S158I 0.24 tolerated(0.05) probably_damaging(0.978) TCGA-MP-A4SV-01 14 21162189 21162189 G T ANG 3'UTR 0.05 TCGA-MP-A4SV-01 14 23315054 23315054 G C MMP14 Missense_Mutation p.E519Q 0.06 tolerated(0.42) benign(0.062) TCGA-MP-A4SV-01 14 30135403 30135403 A T PRKD1 Missense_Mutation p.F139I 0.07 tolerated(0.36) benign(0.016) TCGA-MP-A4SV-01 14 44975506 44975506 G C FSCB Missense_Mutation p.L229V 0.05 tolerated(0.18) benign(0.275) TCGA-MP-A4SV-01 14 50626701 50626701 C G SOS2 Missense_Mutation p.D434H 0.07 deleterious(0) possibly_damaging(0.755) TCGA-MP-A4SV-01 14 72152331 72152331 G C SIPA1L1 Silent p.G1119G 0.08 TCGA-MP-A4SV-01 14 74409272 74409272 G A FAM161B Silent p.L421L 0.04 TCGA-MP-A4SV-01 14 92911683 92911683 T A SLC24A4 Missense_Mutation p.V227E 0.21 tolerated(0.25) benign(0.014) TCGA-MP-A4SV-01 14 93118855 93118855 G T RIN3 Silent p.A487A 0.20 TCGA-MP-A4SV-01 14 93199070 93199070 T C LGMN Missense_Mutation p.D21G 0.15 deleterious(0.04) benign(0.009) TCGA-MP-A4SV-01 14 94526680 94526680 C A DDX24 Silent p.T559T 0.22 TCGA-MP-A4SV-01 14 96707445 96707445 G T BDKRB2 Missense_Mutation p.K260N 0.22 tolerated(0.39) probably_damaging(0.983) TCGA-MP-A4SV-01 15 24922485 24922485 G T NPAP1 Missense_Mutation p.A491S 0.09 tolerated(0.29) possibly_damaging(0.55) TCGA-MP-A4SV-01 15 34628689 34628689 C G SLC12A6 Missense_Mutation p.G65R 0.09 tolerated_low_confidence(0.23) benign(0.002) TCGA-MP-A4SV-01 15 35082648 35082648 C G ACTC1 Missense_Mutation p.A367P 0.26 tolerated_low_confidence(0.06) benign(0.226) TCGA-MP-A4SV-01 15 40398001 40398001 A T BMF Missense_Mutation p.F96Y 0.10 deleterious(0) probably_damaging(0.99) TCGA-MP-A4SV-01 15 43622606 43622606 C G LCMT2 Missense_Mutation p.A28P 0.21 deleterious(0.02) probably_damaging(0.997) TCGA-MP-A4SV-01 15 75093898 75093898 G A CSK Silent p.R283R 0.09 TCGA-MP-A4SV-01 16 31090721 31090721 G A ZNF646 Missense_Mutation p.E1026K 0.10 tolerated(0.13) benign(0.418) TCGA-MP-A4SV-01 16 47684775 47684775 G - PHKB Frame_Shift_Del p.A639Qfs*7 0.27 TCGA-MP-A4SV-01 16 66919531 66919531 G - PDP2 Frame_Shift_Del p.L450Sfs*25 0.33 TCGA-MP-A4SV-01 16 69703977 69703977 G A NFAT5 Silent p.L489L 0.14 TCGA-MP-A4SV-01 16 71318329 71318329 C A CMTR2 Nonsense_Mutation p.G499* 0.43 TCGA-MP-A4SV-01 16 89348306 89348306 C T ANKRD11 Missense_Mutation p.M1548I 0.07 benign(0) TCGA-MP-A4SV-01 17 10243662 10243662 C A MYH13 Missense_Mutation p.V651L 0.37 deleterious(0.04) probably_damaging(0.977) TCGA-MP-A4SV-01 17 12655861 12655861 C T MYOCD Missense_Mutation p.T419M 0.45 deleterious(0) probably_damaging(1) TCGA-MP-A4SV-01 17 16004574 16004574 C T NCOR1 Missense_Mutation p.E894K 0.08 benign(0.218) TCGA-MP-A4SV-01 17 29227570 29227570 C G TEFM Missense_Mutation p.S169T 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-MP-A4SV-01 17 30349328 30349328 A G LRRC37B Missense_Mutation p.D388G 0.24 tolerated(0.09) benign(0.01) TCGA-MP-A4SV-01 17 30594882 30594882 C T RHBDL3 Intron 0.07 TCGA-MP-A4SV-01 17 33434396 33434396 C A RAD51D Missense_Mutation p.G132C 0.16 deleterious(0) probably_damaging(1) TCGA-MP-A4SV-01 17 34305249 34305249 C T CCL16 Missense_Mutation p.E43K 0.06 tolerated(0.13) possibly_damaging(0.78) TCGA-MP-A4SV-01 17 3808613 3808613 G A P2RX1 Silent p.I62I 0.06 TCGA-MP-A4SV-01 17 38450672 38450672 G C CDC6 Missense_Mutation p.E334Q 0.08 tolerated(0.15) benign(0.006) TCGA-MP-A4SV-01 17 40462682 40462688 TCATGAA - STAT5A Missense_Mutation 0.26 TCGA-MP-A4SV-01 17 4047030 4047030 G A CYB5D2 5'UTR 0.07 TCGA-MP-A4SV-01 17 40939347 40939347 G T WNK4 Missense_Mutation p.V510L 0.20 deleterious(0) unknown(0) TCGA-MP-A4SV-01 17 42477153 42477153 C T GPATCH8 Silent p.G764G 0.06 TCGA-MP-A4SV-01 17 4448613 4448613 C G MYBBP1A Missense_Mutation p.E701Q 0.10 deleterious(0) probably_damaging(0.972) TCGA-MP-A4SV-01 17 45734268 45734268 G A KPNB1 Missense_Mutation p.A109T 0.31 deleterious(0.01) probably_damaging(0.949) TCGA-MP-A4SV-01 17 47246954 47246954 C G B4GALNT2 Missense_Mutation p.S522C 0.10 deleterious(0.01) possibly_damaging(0.598) TCGA-MP-A4SV-01 17 5041455 5041455 G C USP6 Missense_Mutation p.R322P 0.39 deleterious_low_confidence(0.05) possibly_damaging(0.453) TCGA-MP-A4SV-01 17 51900587 51900587 G T KIF2B Missense_Mutation p.V65F 0.25 tolerated(0.05) probably_damaging(0.93) TCGA-MP-A4SV-01 17 5418344 5418344 C A NLRP1 Missense_Mutation p.Q1384H 0.26 deleterious(0.02) probably_damaging(0.949) TCGA-MP-A4SV-01 17 60814711 60814711 A C MARCH10 Intron 0.29 TCGA-MP-A4SV-01 17 686352 686352 C A RNMTL1 Missense_Mutation p.P115Q 0.08 tolerated(0.37) benign(0.006) TCGA-MP-A4SV-01 17 72888695 72888695 G T FADS6 Silent p.T104T 0.22 TCGA-MP-A4SV-01 17 7577574 7577574 T C TP53 Missense_Mutation p.Y236C 0.44 deleterious(0) probably_damaging(0.996) TCGA-MP-A4SV-01 17 7836253 7836253 C T CNTROB 5'UTR 0.69 TCGA-MP-A4SV-01 17 79803471 79803471 G A P4HB Missense_Mutation p.T442I 0.20 deleterious(0) probably_damaging(1) TCGA-MP-A4SV-01 18 12325389 12325389 T A TUBB6 Missense_Mutation p.C201S 0.05 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-MP-A4SV-01 18 14479179 14479179 C T CXADRP3 RNA 0.09 TCGA-MP-A4SV-01 18 21761174 21761174 A G OSBPL1A Missense_Mutation p.Y583H 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-MP-A4SV-01 18 31325651 31325651 C T ASXL3 Silent p.L1947L 0.06 TCGA-MP-A4SV-01 18 33272258 33272258 C T GALNT1 Missense_Mutation p.P425S 0.05 deleterious(0) possibly_damaging(0.868) TCGA-MP-A4SV-01 18 47778106 47778106 C T CCDC11 Silent p.K174K 0.32 TCGA-MP-A4SV-01 18 50705365 50705365 C A DCC Silent p.S484S 0.11 TCGA-MP-A4SV-01 18 51858172 51858172 G T STARD6 Silent p.R109R 0.28 TCGA-MP-A4SV-01 18 5433526 5433526 T C EPB41L3 Missense_Mutation p.H285R 0.09 deleterious(0) benign(0.293) TCGA-MP-A4SV-01 18 56414745 56414745 G C MALT1 Missense_Mutation p.D716H 0.11 deleterious(0.02) possibly_damaging(0.743) TCGA-MP-A4SV-01 18 73139445 73139445 G T SMIM21 Missense_Mutation p.A25E 0.28 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-MP-A4SV-01 19 10799240 10799240 G T ILF3 Nonsense_Mutation p.G817* 0.15 TCGA-MP-A4SV-01 19 12551781 12551781 C T CTD-3105H18.16 5'UTR 0.19 TCGA-MP-A4SV-01 19 12551782 12551782 G T CTD-3105H18.16 5'UTR 0.18 TCGA-MP-A4SV-01 19 16006318 16006318 G A CYP4F2 Missense_Mutation p.S114L 0.06 deleterious(0.01) benign(0.171) TCGA-MP-A4SV-01 19 17780381 17780381 C A UNC13A Silent p.T125T 0.27 TCGA-MP-A4SV-01 19 32844925 32844925 G C ZNF507 Missense_Mutation p.V397L 0.14 deleterious(0) possibly_damaging(0.872) TCGA-MP-A4SV-01 19 33464391 33464391 T C C19orf40 Missense_Mutation p.C56R 0.20 tolerated(0.12) benign(0.014) TCGA-MP-A4SV-01 19 36109870 36109870 G A HAUS5 Silent p.Q366Q 0.12 TCGA-MP-A4SV-01 19 40366284 40366284 G A FCGBP Silent p.C4650C 0.11 TCGA-MP-A4SV-01 19 43262304 43262304 G C PSG8 Missense_Mutation p.L187V 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-MP-A4SV-01 19 43683276 43683276 T A PSG5 Intron 0.06 TCGA-MP-A4SV-01 19 44079131 44079131 G C XRCC1 Silent p.L25L 0.13 TCGA-MP-A4SV-01 19 4511063 4511063 C T PLIN4 Missense_Mutation p.G956E 0.19 tolerated(0.08) probably_damaging(0.971) TCGA-MP-A4SV-01 19 4552560 4552560 G A SEMA6B Missense_Mutation p.A288V 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-MP-A4SV-01 19 46287938 46287938 T A AC011530.4 Missense_Mutation p.E52D 0.19 tolerated_low_confidence(0.54) possibly_damaging(0.726) TCGA-MP-A4SV-01 19 46973670 46973670 G C PNMAL1 Missense_Mutation p.S208C 0.06 tolerated(0.15) possibly_damaging(0.843) TCGA-MP-A4SV-01 19 47725046 47725046 C T BBC3 Missense_Mutation p.R233H 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.741) TCGA-MP-A4SV-01 19 50165692 50165692 C T IRF3 Silent p.V197V 0.31 TCGA-MP-A4SV-01 19 51767259 51767259 G T SIGLECL1 5'UTR 0.15 TCGA-MP-A4SV-01 19 53740671 53740672 CA - ZNF677 Frame_Shift_Del p.C436Wfs*26 0.16 TCGA-MP-A4SV-01 19 55098804 55098804 C A LILRA2 Silent p.A481A 0.20 TCGA-MP-A4SV-01 19 56552345 56552345 C A NLRP5 Silent p.V948V 0.07 TCGA-MP-A4SV-01 19 5680538 5680538 C T C19orf70 5'UTR 0.18 TCGA-MP-A4SV-01 19 5705926 5705926 G C LONP1 Silent p.G408G 0.21 TCGA-MP-A4SV-01 19 57089781 57089781 G T ZNF470 Missense_Mutation p.A662S 0.20 tolerated(1) benign(0.006) TCGA-MP-A4SV-01 19 58370928 58370928 G T ZNF587 Missense_Mutation p.G383V 0.22 tolerated(0.11) benign(0.293) TCGA-MP-A4SV-01 19 58452647 58452647 T A ZNF256 Missense_Mutation p.Q510L 0.07 deleterious(0.02) probably_damaging(0.934) TCGA-MP-A4SV-01 1 103444963 103444963 C A COL11A1 Missense_Mutation p.G862V 0.24 unknown(0) TCGA-MP-A4SV-01 1 103444964 103444964 C A COL11A1 Missense_Mutation p.G862C 0.24 unknown(0) TCGA-MP-A4SV-01 1 108160255 108160255 C A VAV3 Splice_Site p.X639_splice 0.12 TCGA-MP-A4SV-01 1 113616159 113616159 C T LRIG2 Missense_Mutation p.P44L 0.27 deleterious(0) benign(0.031) TCGA-MP-A4SV-01 1 118516175 118516175 G T SPAG17 Missense_Mutation p.S2005Y 0.37 tolerated(0.69) benign(0.187) TCGA-MP-A4SV-01 1 12835253 12835253 G T PRAMEF12 Silent p.V81V 0.07 TCGA-MP-A4SV-01 1 145578314 145578314 C G PIAS3 Missense_Mutation p.L93V 0.05 tolerated(0.63) benign(0.026) TCGA-MP-A4SV-01 1 152058229 152058229 T C TCHHL1 Silent p.P643P 0.08 TCGA-MP-A4SV-01 1 152080777 152080777 T G TCHH Missense_Mutation p.Q1639P 0.22 unknown(0) TCGA-MP-A4SV-01 1 152281218 152281218 C A FLG Missense_Mutation p.E2048D 0.29 possibly_damaging(0.523) TCGA-MP-A4SV-01 1 153028937 153028937 A G SPRR2A 3'UTR 0.08 TCGA-MP-A4SV-01 1 158517453 158517453 G T OR6Y1 Missense_Mutation p.T148K 0.20 tolerated(0.13) benign(0.102) TCGA-MP-A4SV-01 1 158687584 158687584 C T OR6K3 Missense_Mutation p.E108K 0.05 deleterious(0) benign(0) TCGA-MP-A4SV-01 1 160394029 160394029 C A VANGL2 Missense_Mutation p.L421M 0.09 tolerated(0.07) possibly_damaging(0.787) TCGA-MP-A4SV-01 1 169435115 169435115 T A SLC19A2 Missense_Mutation p.Q489L 0.20 tolerated(0.28) benign(0) TCGA-MP-A4SV-01 1 176525925 176525925 C G PAPPA2 Missense_Mutation p.S156C 0.04 deleterious_low_confidence(0.04) benign(0.156) TCGA-MP-A4SV-01 1 176659498 176659498 C G PAPPA2 Missense_Mutation p.P788R 0.24 deleterious(0) probably_damaging(1) TCGA-MP-A4SV-01 1 177198967 177198967 G A BRINP2 5'UTR 0.11 TCGA-MP-A4SV-01 1 179414242 179414242 G T AXDND1 Missense_Mutation p.E567D 0.30 tolerated(0.72) benign(0.176) TCGA-MP-A4SV-01 1 180897675 180897675 C A KIAA1614 Missense_Mutation p.H391N 0.25 deleterious(0) probably_damaging(0.999) TCGA-MP-A4SV-01 1 197147607 197147607 C A ZBTB41 Missense_Mutation p.G571V 0.22 deleterious(0) probably_damaging(0.977) TCGA-MP-A4SV-01 1 197147608 197147608 C T ZBTB41 Missense_Mutation p.G571R 0.22 deleterious(0) probably_damaging(0.977) TCGA-MP-A4SV-01 1 197889242 197889242 C T LHX9 Silent p.L105L 0.08 TCGA-MP-A4SV-01 1 205039123 205039123 C T CNTN2 Missense_Mutation p.R789C 0.10 deleterious(0) probably_damaging(0.953) TCGA-MP-A4SV-01 1 216420325 216420325 G T USH2A Missense_Mutation p.P804H 0.15 probably_damaging(0.954) TCGA-MP-A4SV-01 1 220406155 220406155 C A RAB3GAP2 Nonsense_Mutation p.E56* 0.25 TCGA-MP-A4SV-01 1 22173083 22173083 C A HSPG2 Missense_Mutation p.S2725I 0.05 benign(0.004) TCGA-MP-A4SV-01 1 235973570 235973570 C G LYST Missense_Mutation p.R183T 0.05 deleterious_low_confidence(0.01) benign(0.125) TCGA-MP-A4SV-01 1 236647707 236647707 G A EDARADD 3'Flank 0.12 TCGA-MP-A4SV-01 1 237778090 237778090 C G RYR2 Missense_Mutation p.R1888G 0.34 benign(0) TCGA-MP-A4SV-01 1 238053768 238053768 T A ZP4 Silent p.I56I 0.07 TCGA-MP-A4SV-01 1 238090737 238090737 C A RP11-193H5.1 RNA 0.12 TCGA-MP-A4SV-01 1 24077443 24077443 G A TCEB3 Nonsense_Mutation p.W142* 0.10 TCGA-MP-A4SV-01 1 24078182 24078182 G C TCEB3 Missense_Mutation p.E389Q 0.05 tolerated(0.13) benign(0.044) TCGA-MP-A4SV-01 1 24463630 24463630 G C IL22RA1 Missense_Mutation p.L116V 0.08 tolerated(0.25) benign(0.053) TCGA-MP-A4SV-01 1 248039777 248039777 G T TRIM58 Missense_Mutation p.D483Y 0.25 deleterious_low_confidence(0.02) benign(0.08) TCGA-MP-A4SV-01 1 248366854 248366854 C A OR2M3 Missense_Mutation p.A162E 0.05 tolerated(0.07) benign(0.049) TCGA-MP-A4SV-01 1 248367127 248367127 G T OR2M3 Missense_Mutation p.G253V 0.32 deleterious(0) probably_damaging(0.994) TCGA-MP-A4SV-01 1 25549807 25549807 T C SYF2 Missense_Mutation p.K228E 0.26 tolerated(0.35) benign(0.163) TCGA-MP-A4SV-01 1 28169792 28169792 G T PPP1R8 Missense_Mutation p.R196S 0.05 tolerated(0.12) benign(0.285) TCGA-MP-A4SV-01 1 2939071 2939071 C A ACTRT2 Missense_Mutation p.P274H 0.25 deleterious(0.02) probably_damaging(0.983) TCGA-MP-A4SV-01 1 31655426 31655426 G A NKAIN1 Silent p.F161F 0.11 TCGA-MP-A4SV-01 1 34042925 34042925 A T CSMD2 Missense_Mutation p.L2518Q 0.12 tolerated(0.8) benign(0.006) TCGA-MP-A4SV-01 1 35259992 35259992 G T GJA4 Missense_Mutation p.G60C 0.13 deleterious(0) probably_damaging(1) TCGA-MP-A4SV-01 1 36474327 36474327 G C AGO3 Missense_Mutation p.R277T 0.12 deleterious(0.04) possibly_damaging(0.495) TCGA-MP-A4SV-01 1 36933673 36933673 C A CSF3R Intron 0.13 TCGA-MP-A4SV-01 1 40131834 40131834 G A NT5C1A Silent p.I70I 0.06 TCGA-MP-A4SV-01 1 40928765 40928765 A C ZFP69B Missense_Mutation p.K370T 0.08 deleterious(0) probably_damaging(0.999) TCGA-MP-A4SV-01 1 41012295 41012295 G A ZNF684 Silent p.L100L 0.09 TCGA-MP-A4SV-01 1 53553735 53553735 A T SLC1A7 Silent p.A543A 0.24 TCGA-MP-A4SV-01 1 71477983 71477983 G C PTGER3 Intron 0.11 TCGA-MP-A4SV-01 1 79387416 79387416 A T ELTD1 Missense_Mutation p.M380K 0.07 deleterious(0.03) probably_damaging(0.93) TCGA-MP-A4SV-01 1 82436124 82436124 A - LPHN2 Frame_Shift_Del p.K938Nfs*54 0.08 TCGA-MP-A4SV-01 1 87569262 87569262 C G HS2ST1 Silent p.L278L 0.08 TCGA-MP-A4SV-01 1 957815 957815 C G AGRN Missense_Mutation p.L146V 0.33 deleterious_low_confidence(0) benign(0.009) TCGA-MP-A4SV-01 20 16729511 16729511 G T OTOR Splice_Site p.X39_splice 0.45 TCGA-MP-A4SV-01 20 30507720 30507720 C T TTLL9 Silent p.I186I 0.05 TCGA-MP-A4SV-01 20 33345057 33345057 G C NCOA6 Missense_Mutation p.N498K 0.21 benign(0.219) TCGA-MP-A4SV-01 20 37357005 37357005 C T SLC32A1 Missense_Mutation p.T434M 0.21 tolerated(0.21) benign(0.069) TCGA-MP-A4SV-01 20 39987102 39987102 G A LPIN3 Silent p.V777V 0.06 TCGA-MP-A4SV-01 20 44577669 44577669 C T ZNF335 Missense_Mutation p.E1318K 0.06 deleterious(0.01) probably_damaging(0.989) TCGA-MP-A4SV-01 20 44664506 44664506 G A SLC12A5 Missense_Mutation p.V147M 0.34 deleterious(0) probably_damaging(0.969) TCGA-MP-A4SV-01 20 47839913 47839913 G T DDX27 Missense_Mutation p.D168Y 0.07 deleterious(0) benign(0.109) TCGA-MP-A4SV-01 21 11038778 11038778 G C BAGE2 RNA 0.06 TCGA-MP-A4SV-01 21 38884454 38884454 A T DYRK1A Missense_Mutation p.N638Y 0.14 deleterious_low_confidence(0.01) benign(0.007) TCGA-MP-A4SV-01 21 45540513 45540513 T C PWP2 Missense_Mutation p.Y447H 0.11 deleterious(0) probably_damaging(0.999) TCGA-MP-A4SV-01 21 45811307 45811307 G C TRPM2 Silent p.L531L 0.11 TCGA-MP-A4SV-01 22 19959935 19959935 C G ARVCF Splice_Site p.X881_splice 0.09 TCGA-MP-A4SV-01 22 19960535 19960535 C A ARVCF Silent p.A821A 0.11 TCGA-MP-A4SV-01 22 19967376 19967376 T C ARVCF Missense_Mutation p.Y429C 0.30 deleterious(0) probably_damaging(0.933) TCGA-MP-A4SV-01 22 22893242 22893242 G A PRAME Silent p.F97F 0.18 TCGA-MP-A4SV-01 22 45608107 45608107 G A KIAA0930 Intron 0.19 TCGA-MP-A4SV-01 22 46653555 46653555 G T PKDREJ Missense_Mutation p.Q1889K 0.14 deleterious(0.02) benign(0.397) TCGA-MP-A4SV-01 22 50217642 50217642 G A BRD1 Silent p.H108H 0.12 TCGA-MP-A4SV-01 2 103274377 103274377 C G SLC9A2 Nonsense_Mutation p.S215* 0.08 TCGA-MP-A4SV-01 2 103335600 103335600 C T MFSD9 Missense_Mutation p.R235Q 0.07 tolerated(0.59) benign(0.067) TCGA-MP-A4SV-01 2 128051575 128051575 G A ERCC3 Intron 0.23 TCGA-MP-A4SV-01 2 128051576 128051576 G T ERCC3 Intron 0.23 TCGA-MP-A4SV-01 2 128522374 128522374 T A WDR33 Intron 0.35 TCGA-MP-A4SV-01 2 131883344 131883344 G T PLEKHB2 Missense_Mutation p.W19L 0.09 deleterious(0) probably_damaging(1) TCGA-MP-A4SV-01 2 133426000 133426000 G C LYPD1 Missense_Mutation p.Q55E 0.07 tolerated(0.09) possibly_damaging(0.83) TCGA-MP-A4SV-01 2 144903231 144903231 C G GTDC1 Missense_Mutation p.K85N 0.07 deleterious(0) probably_damaging(0.999) TCGA-MP-A4SV-01 2 145157316 145157316 C A ZEB2 Missense_Mutation p.A480S 0.11 tolerated(0.21) benign(0.001) TCGA-MP-A4SV-01 2 161056643 161056643 G A ITGB6 5'UTR 0.10 TCGA-MP-A4SV-01 2 168104094 168104094 C T XIRP2 Silent p.V2064V 0.06 TCGA-MP-A4SV-01 2 170044658 170044658 G A LRP2 Silent p.V3050V 0.09 TCGA-MP-A4SV-01 2 172822973 172822973 G T HAT1 Missense_Mutation p.V219L 0.36 deleterious(0.04) benign(0.221) TCGA-MP-A4SV-01 2 174085953 174085953 G C MLTK Intron 0.16 TCGA-MP-A4SV-01 2 174086214 174086214 G C MLTK Intron 0.10 TCGA-MP-A4SV-01 2 179319183 179319183 G A DFNB59 Silent p.V112V 0.11 TCGA-MP-A4SV-01 2 179598581 179598581 C T TTN Missense_Mutation p.A5179T 0.10 TCGA-MP-A4SV-01 2 179614618 179614618 C T TTN Intron 0.29 TCGA-MP-A4SV-01 2 185803878 185803878 G T ZNF804A 3'UTR 0.32 TCGA-MP-A4SV-01 2 197028013 197028013 T C STK17B Missense_Mutation p.Y32C 0.46 deleterious(0.01) probably_damaging(0.968) TCGA-MP-A4SV-01 2 207171696 207171696 T C ZDBF2 Missense_Mutation p.V815A 0.07 tolerated(0.05) possibly_damaging(0.481) TCGA-MP-A4SV-01 2 210558582 210558582 A G MAP2 Missense_Mutation p.Y563C 0.37 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-MP-A4SV-01 2 211455575 211455575 T C CPS1 Silent p.L304L 0.09 TCGA-MP-A4SV-01 2 212248726 212248726 G A ERBB4 Nonsense_Mutation p.Q1181* 0.06 TCGA-MP-A4SV-01 2 216284084 216284084 C A FN1 Missense_Mutation p.G567V 0.08 deleterious(0) benign(0.286) TCGA-MP-A4SV-01 2 219868828 219868828 C G CCDC108 Missense_Mutation p.E1801Q 0.10 tolerated(0.48) unknown(0) TCGA-MP-A4SV-01 2 220073905 220073905 G A ZFAND2B Intron 0.18 TCGA-MP-A4SV-01 2 228881739 228881739 G C SPHKAP Silent p.V1277V 0.10 TCGA-MP-A4SV-01 2 234359637 234359637 C T DGKD Missense_Mutation p.P703L 0.06 deleterious(0.04) benign(0.02) TCGA-MP-A4SV-01 2 238250802 238250802 G C COL6A3 Missense_Mutation p.I2557M 0.14 unknown(0) TCGA-MP-A4SV-01 2 240085567 240085567 A G HDAC4 Silent p.N181N 0.28 TCGA-MP-A4SV-01 2 26725264 26725264 A C OTOF Missense_Mutation p.L205R 0.19 deleterious(0.01) possibly_damaging(0.701) TCGA-MP-A4SV-01 2 27479696 27479696 G A SLC30A3 Silent p.T281T 0.33 TCGA-MP-A4SV-01 2 27851919 27851919 G C GPN1 Missense_Mutation p.R12S 0.05 tolerated_low_confidence(0.32) benign(0.227) TCGA-MP-A4SV-01 2 27883966 27883966 G C SUPT7L Missense_Mutation p.L102V 0.10 tolerated(0.18) probably_damaging(0.973) TCGA-MP-A4SV-01 2 40366544 40366544 G C SLC8A1 Missense_Mutation p.P848A 0.55 deleterious(0.01) probably_damaging(1) TCGA-MP-A4SV-01 2 43958690 43958690 G C PLEKHH2 Silent p.L964L 0.44 TCGA-MP-A4SV-01 2 63667070 63667070 C A WDPCP Intron 0.29 TCGA-MP-A4SV-01 2 68544395 68544395 G A CNRIP1 Missense_Mutation p.S75F 0.06 deleterious(0) benign(0.421) TCGA-MP-A4SV-01 2 80530877 80530877 C A LRRTM1 Missense_Mutation p.C23F 0.08 tolerated(0.19) benign(0.001) TCGA-MP-A4SV-01 2 90044247 90044247 C A IGKV2D-24 Silent p.T56T 0.29 TCGA-MP-A4SV-01 2 90077804 90077804 C A IGKV3D-20 Missense_Mutation p.L10I 0.31 tolerated(0.09) probably_damaging(0.998) TCGA-MP-A4SV-01 3 121151780 121151780 T A POLQ Missense_Mutation p.E2548D 0.54 deleterious(0.02) possibly_damaging(0.863) TCGA-MP-A4SV-01 3 121414349 121414349 T G GOLGB1 Missense_Mutation p.Q1674P 0.08 possibly_damaging(0.776) TCGA-MP-A4SV-01 3 127816235 127816235 G A RUVBL1 Silent p.D308D 0.59 TCGA-MP-A4SV-01 3 136699372 136699372 C G IL20RB Silent p.L51L 0.05 TCGA-MP-A4SV-01 3 148757822 148757822 G A HLTF Missense_Mutation p.S833L 0.11 deleterious(0) possibly_damaging(0.902) TCGA-MP-A4SV-01 3 157815885 157815885 G C SHOX2 Silent p.T333T 0.06 TCGA-MP-A4SV-01 3 169801827 169801827 G T GPR160 Missense_Mutation p.D23Y 0.06 deleterious(0) possibly_damaging(0.906) TCGA-MP-A4SV-01 3 171177825 171177825 G A TNIK Silent p.L10L 0.56 TCGA-MP-A4SV-01 3 171417558 171417558 C T PLD1 Missense_Mutation p.D402N 0.05 deleterious(0) possibly_damaging(0.766) TCGA-MP-A4SV-01 3 193385011 193385011 T A OPA1 Missense_Mutation p.D957E 0.45 tolerated(0.08) possibly_damaging(0.831) TCGA-MP-A4SV-01 3 193385012 193385012 G T OPA1 Missense_Mutation p.G958C 0.46 tolerated(0.06) benign(0.001) TCGA-MP-A4SV-01 3 42907022 42907022 C T ACKR2 Missense_Mutation p.S343L 0.12 tolerated(0.23) benign(0.002) TCGA-MP-A4SV-01 3 48690480 48690480 C G CELSR3 Silent p.R1863R 0.48 TCGA-MP-A4SV-01 3 49314379 49314379 G A C3orf62 5'UTR 0.31 TCGA-MP-A4SV-01 3 50645412 50645412 C A CISH Missense_Mutation p.D152Y 0.07 deleterious(0.01) probably_damaging(0.914) TCGA-MP-A4SV-01 3 89390966 89390966 C A EPHA3 Missense_Mutation p.D344E 0.42 tolerated(1) benign(0.066) TCGA-MP-A4SV-01 4 100208759 100208759 C G ADH1A Missense_Mutation p.E28Q 0.10 tolerated(0.1) probably_damaging(0.996) TCGA-MP-A4SV-01 4 107846989 107846989 C A DKK2 Missense_Mutation p.G114C 0.29 deleterious(0.01) probably_damaging(1) TCGA-MP-A4SV-01 4 123249451 123249451 G A KIAA1109 Missense_Mutation p.E3730K 0.19 possibly_damaging(0.626) TCGA-MP-A4SV-01 4 1235180 1235180 C G CTBP1 Intron 0.10 TCGA-MP-A4SV-01 4 124235184 124235184 G C SPATA5 Missense_Mutation p.D883H 0.10 deleterious(0.02) possibly_damaging(0.67) TCGA-MP-A4SV-01 4 134072151 134072151 G T PCDH10 Missense_Mutation p.V286L 0.25 tolerated(0.26) benign(0.233) TCGA-MP-A4SV-01 4 140810658 140810658 C A MAML3 Missense_Mutation p.Q644H 0.21 benign(0.188) TCGA-MP-A4SV-01 4 149357510 149357510 G C NR3C2 Missense_Mutation p.S168C 0.10 tolerated_low_confidence(0.1) benign(0.425) TCGA-MP-A4SV-01 4 154625341 154625341 A C TLR2 Missense_Mutation p.M428L 0.26 tolerated(0.14) possibly_damaging(0.662) TCGA-MP-A4SV-01 4 170913201 170913201 G A MFAP3L Silent p.I186I 0.08 TCGA-MP-A4SV-01 4 183635269 183635269 G T TENM3 Nonsense_Mutation p.G751* 0.19 TCGA-MP-A4SV-01 4 184210674 184210674 G A WWC2 Silent p.L1090L 0.23 TCGA-MP-A4SV-01 4 188924141 188924141 T A ZFP42 Silent p.P60P 0.06 TCGA-MP-A4SV-01 4 2241950 2241950 C G HAUS3 Missense_Mutation p.D242H 0.12 deleterious(0.03) possibly_damaging(0.688) TCGA-MP-A4SV-01 4 2242367 2242367 C A HAUS3 Nonsense_Mutation p.E103* 0.09 TCGA-MP-A4SV-01 4 25785871 25785871 C T SEL1L3 Silent p.L753L 0.09 TCGA-MP-A4SV-01 4 48486095 48486095 C A SLC10A4 Missense_Mutation p.L173M 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-MP-A4SV-01 4 52894225 52894225 T A SGCB Missense_Mutation p.D221V 0.22 tolerated(0.15) benign(0.257) TCGA-MP-A4SV-01 4 5733209 5733209 T C EVC Silent p.L148L 0.05 TCGA-MP-A4SV-01 4 62849323 62849323 T A LPHN3 Splice_Site p.X1011_splice 0.06 TCGA-MP-A4SV-01 4 68506893 68506893 G A UBA6 Silent p.F510F 0.08 TCGA-MP-A4SV-01 4 69973927 69973927 A G UGT2B7 Silent p.Q399Q 0.07 TCGA-MP-A4SV-01 4 70823091 70823091 A T CSN2 Silent p.P192P 0.28 TCGA-MP-A4SV-01 4 73185191 73185191 A C ADAMTS3 Missense_Mutation p.L404V 0.16 deleterious(0.01) probably_damaging(0.967) TCGA-MP-A4SV-01 4 79400611 79400611 G T FRAS1 Missense_Mutation p.G2728C 0.23 probably_damaging(0.994) TCGA-MP-A4SV-01 4 89668138 89668138 T A FAM13A Missense_Mutation p.E804V 0.21 deleterious(0) probably_damaging(0.999) TCGA-MP-A4SV-01 5 107684233 107684233 T C FBXL17 Splice_Site p.X459_splice 0.15 TCGA-MP-A4SV-01 5 114860108 114860108 G A FEM1C Missense_Mutation p.T584I 0.07 tolerated(0.37) benign(0.001) TCGA-MP-A4SV-01 5 140182821 140182821 C T PCDHA3 Missense_Mutation p.S680F 0.21 deleterious_low_confidence(0.04) benign(0.168) TCGA-MP-A4SV-01 5 140553937 140553937 C A PCDHB7 Missense_Mutation p.N507K 0.17 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-MP-A4SV-01 5 140683155 140683155 C A SLC25A2 Missense_Mutation p.R93M 0.17 tolerated(0.11) possibly_damaging(0.89) TCGA-MP-A4SV-01 5 140711919 140711919 C T PCDHGA1 Silent p.N556N 0.05 TCGA-MP-A4SV-01 5 153381906 153381906 G A FAM114A2 Silent p.A387A 0.12 TCGA-MP-A4SV-01 5 156590266 156590266 G T FAM71B Missense_Mutation p.S337Y 0.19 deleterious(0) probably_damaging(0.969) TCGA-MP-A4SV-01 5 159776680 159776680 C T C1QTNF2 Missense_Mutation p.G163E 0.07 deleterious(0) unknown(0) TCGA-MP-A4SV-01 5 31983647 31983647 G C PDZD2 Missense_Mutation p.R288T 0.05 tolerated(0.21) benign(0.01) TCGA-MP-A4SV-01 5 43161564 43161564 G T ZNF131 Missense_Mutation p.Q195H 0.17 deleterious(0.01) possibly_damaging(0.834) TCGA-MP-A4SV-01 5 43161568 43161568 G T ZNF131 Missense_Mutation p.V197L 0.17 tolerated(0.54) benign(0.001) TCGA-MP-A4SV-01 5 76251547 76251547 G A CRHBP Missense_Mutation p.E135K 0.12 deleterious(0.04) benign(0.035) TCGA-MP-A4SV-01 5 95743963 95743963 A G PCSK1 Missense_Mutation p.L387P 0.24 deleterious(0) probably_damaging(1) TCGA-MP-A4SV-01 6 102134115 102134115 A G GRIK2 Missense_Mutation p.R280G 0.15 deleterious(0) probably_damaging(0.989) TCGA-MP-A4SV-01 6 10398634 10398634 G A TFAP2A 3'UTR 0.12 TCGA-MP-A4SV-01 6 112455759 112455759 C T LAMA4 Missense_Mutation p.R1156K 0.25 tolerated(0.25) possibly_damaging(0.812) TCGA-MP-A4SV-01 6 122777625 122777625 C G SERINC1 Splice_Site p.X124_splice 0.11 TCGA-MP-A4SV-01 6 129468137 129468137 G A LAMA2 Missense_Mutation p.G285R 0.18 deleterious(0) probably_damaging(1) TCGA-MP-A4SV-01 6 143753700 143753700 C G ADAT2 Missense_Mutation p.C134S 0.13 deleterious(0.01) possibly_damaging(0.854) TCGA-MP-A4SV-01 6 153043475 153043475 C T MYCT1 3'UTR 0.25 TCGA-MP-A4SV-01 6 26452203 26452203 A G BTN3A3 Missense_Mutation p.N440S 0.07 tolerated(0.09) benign(0.011) TCGA-MP-A4SV-01 6 27782162 27782162 C G HIST1H2AJ Missense_Mutation p.K119N 0.06 deleterious_low_confidence(0.02) benign(0.293) TCGA-MP-A4SV-01 6 30552239 30552239 C A ABCF1 Silent p.A429A 0.06 TCGA-MP-A4SV-01 6 30633346 30633346 C A DHX16 Silent p.R277R 0.08 TCGA-MP-A4SV-01 6 32627886 32627886 G A HLA-DQB1 3'UTR 0.23 TCGA-MP-A4SV-01 6 44081947 44081947 C T MRPL14 Splice_Site p.X24_splice 0.06 TCGA-MP-A4SV-01 6 49696497 49696497 C A CRISP3 Missense_Mutation p.Q251H 0.18 tolerated(0.08) benign(0.227) TCGA-MP-A4SV-01 6 50791168 50791168 G A TFAP2B Missense_Mutation p.G44S 0.17 tolerated(0.64) benign(0.052) TCGA-MP-A4SV-01 6 51701242 51701242 G A PKHD1 Silent p.V2711V 0.10 TCGA-MP-A4SV-01 6 56880096 56880096 C G BEND6 Missense_Mutation p.S155C 0.05 deleterious_low_confidence(0.04) benign(0.221) TCGA-MP-A4SV-01 6 66063351 66063351 C A EYS Nonsense_Mutation p.G487* 0.21 TCGA-MP-A4SV-01 6 76660548 76660548 G T IMPG1 Missense_Mutation p.L519I 0.13 tolerated(0.08) possibly_damaging(0.637) TCGA-MP-A4SV-01 6 79650952 79650952 T A PHIP Nonsense_Mutation p.K1642* 0.19 TCGA-MP-A4SV-01 6 97489402 97489402 C T KLHL32 Missense_Mutation p.A80V 0.21 tolerated(0.34) probably_damaging(0.998) TCGA-MP-A4SV-01 7 100679320 100679320 C T MUC17 Silent p.T1541T 0.08 TCGA-MP-A4SV-01 7 101845298 101845298 G A CUX1 Silent p.Q918Q 0.05 TCGA-MP-A4SV-01 7 103290767 103290767 C G RELN Missense_Mutation p.W652C 0.08 deleterious(0) probably_damaging(0.998) TCGA-MP-A4SV-01 7 106841863 106841863 C G HBP1 Nonsense_Mutation p.S511* 0.16 TCGA-MP-A4SV-01 7 123599866 123599866 G C SPAM1 Missense_Mutation p.C458S 0.48 deleterious(0.04) probably_damaging(1) TCGA-MP-A4SV-01 7 137782639 137782639 G A AKR1D1 Missense_Mutation p.E136K 0.06 tolerated(0.14) benign(0.012) TCGA-MP-A4SV-01 7 141754683 141754683 C T MGAM Missense_Mutation p.R1097C 0.12 deleterious(0.01) probably_damaging(0.977) TCGA-MP-A4SV-01 7 142032484 142032484 C A TRBV7-1 Missense_Mutation p.Q102K 0.41 tolerated(0.13) benign(0.006) TCGA-MP-A4SV-01 7 142562064 142562064 C T EPHB6 Missense_Mutation p.S169F 0.08 tolerated(0.24) probably_damaging(0.99) TCGA-MP-A4SV-01 7 142583200 142583200 C A TRPV6 Missense_Mutation p.R21I 0.17 tolerated(0.4) benign(0.092) TCGA-MP-A4SV-01 7 143632906 143632906 C T OR2F2 Missense_Mutation p.S194F 0.19 tolerated(0.53) benign(0.02) TCGA-MP-A4SV-01 7 150648799 150648799 G A KCNH2 Missense_Mutation p.A561V 0.31 deleterious(0) probably_damaging(0.997) TCGA-MP-A4SV-01 7 158715070 158715070 C T WDR60 Nonsense_Mutation p.R642* 0.08 TCGA-MP-A4SV-01 7 16502135 16502135 G A SOSTDC1 3'UTR 0.05 TCGA-MP-A4SV-01 7 22532236 22532236 G C STEAP1B Missense_Mutation p.S237C 0.07 deleterious(0) probably_damaging(0.999) TCGA-MP-A4SV-01 7 43540317 43540317 C A HECW1 Silent p.R1153R 0.40 TCGA-MP-A4SV-01 7 47814742 47814742 C T PKD1L1 Silent p.%3D 0.04 TCGA-MP-A4SV-01 7 73521483 73521483 G A LIMK1 Missense_Mutation p.G342E 0.18 deleterious(0) probably_damaging(0.982) TCGA-MP-A4SV-01 7 73521484 73521484 G T LIMK1 Silent p.G342G 0.20 TCGA-MP-A4SV-01 7 82582194 82582194 C T PCLO Missense_Mutation p.S2692N 0.07 unknown(0) TCGA-MP-A4SV-01 7 82997168 82997168 C T SEMA3E Missense_Mutation p.E688K 0.06 tolerated(0.34) benign(0.002) TCGA-MP-A4SV-01 7 944739 944740 - A ADAP1 Frame_Shift_Ins p.T154Dfs*14 0.33 TCGA-MP-A4SV-01 8 10466057 10466057 C A RP1L1 Missense_Mutation p.V1851L 0.19 unknown(0) TCGA-MP-A4SV-01 8 106810990 106810990 C T ZFPM2 Missense_Mutation p.R260W 0.09 deleterious(0) probably_damaging(1) TCGA-MP-A4SV-01 8 113694842 113694842 C A CSMD3 Missense_Mutation p.D836Y 0.04 deleterious(0) probably_damaging(1) TCGA-MP-A4SV-01 8 120942174 120942174 G A DEPTOR Missense_Mutation p.E141K 0.09 deleterious(0.02) probably_damaging(0.987) TCGA-MP-A4SV-01 8 124027671 124027671 G T DERL1 3'UTR 0.08 TCGA-MP-A4SV-01 8 25226163 25226163 C T DOCK5 Silent p.L1120L 0.15 TCGA-MP-A4SV-01 8 26212074 26212074 G T PPP2R2A Nonsense_Mutation p.E101* 0.10 TCGA-MP-A4SV-01 8 42036448 42036448 G T PLAT Silent p.G499G 0.36 TCGA-MP-A4SV-01 8 53074007 53074007 C G ST18 Missense_Mutation p.D508H 0.16 deleterious(0) probably_damaging(0.992) TCGA-MP-A4SV-01 8 68018141 68018141 G T CSPP1 Missense_Mutation p.A351S 0.40 tolerated(0.39) benign(0.034) TCGA-MP-A4SV-01 8 81899639 81899639 G A PAG1 Silent p.S80S 0.10 TCGA-MP-A4SV-01 8 87060869 87060869 G T PSKH2 Missense_Mutation p.S327Y 0.26 deleterious(0) possibly_damaging(0.642) TCGA-MP-A4SV-01 8 88885984 88885984 G T DCAF4L2 Missense_Mutation p.D72E 0.25 tolerated(0.08) benign(0.028) TCGA-MP-A4SV-01 8 92365217 92365217 T C SLC26A7 Missense_Mutation p.I436T 0.26 tolerated(0.12) possibly_damaging(0.779) TCGA-MP-A4SV-01 9 111899750 111899750 C G FRRS1L Missense_Mutation p.L340F 0.06 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-MP-A4SV-01 9 120476640 120476640 G C TLR4 Missense_Mutation p.R745P 0.07 deleterious(0.01) probably_damaging(0.994) TCGA-MP-A4SV-01 9 130289575 130289575 G A FAM129B Silent p.F71F 0.08 TCGA-MP-A4SV-01 9 131502280 131502280 C T ZER1 Missense_Mutation p.E658K 0.08 tolerated(0.74) benign(0.038) TCGA-MP-A4SV-01 9 16419110 16419110 C G BNC2 Missense_Mutation p.L1059F 0.05 deleterious(0) probably_damaging(0.997) TCGA-MP-A4SV-01 9 20717839 20717839 C T FOCAD Missense_Mutation p.S35L 0.10 tolerated(0.09) benign(0.016) TCGA-MP-A4SV-01 9 21367767 21367767 G T IFNA13 Silent p.L81L 0.20 TCGA-MP-A4SV-01 9 5044488 5044488 G C JAK2 Missense_Mutation p.D146H 0.11 deleterious(0) probably_damaging(0.999) TCGA-MP-A4SV-01 9 74485025 74485025 C A ABHD17B Missense_Mutation p.K207N 0.21 deleterious(0.04) benign(0.008) TCGA-MP-A4SV-01 9 79320937 79320937 C T PRUNE2 Missense_Mutation p.E2085K 0.06 deleterious(0.02) benign(0.023) TCGA-MP-A4SV-01 9 86616726 86616726 A T RMI1 Silent p.S275S 0.33 TCGA-MP-A4SV-01 9 94487322 94487322 C A ROR2 Missense_Mutation p.G485V 0.12 deleterious(0) probably_damaging(1) TCGA-MP-A4SV-01 9 96233642 96233642 C A FAM120A Missense_Mutation p.R232S 0.09 tolerated(0.15) possibly_damaging(0.774) TCGA-MP-A4SV-01 X 105855874 105855874 C T CXorf57 Silent p.Y188Y 0.12 TCGA-MP-A4SV-01 X 109924723 109924723 C G CHRDL1 Missense_Mutation p.W381C 0.06 deleterious(0) probably_damaging(0.999) TCGA-MP-A4SV-01 X 123631040 123631040 T A TENM1 Missense_Mutation p.N1174I 0.38 deleterious(0) possibly_damaging(0.862) TCGA-MP-A4SV-01 X 141290902 141290902 T G MAGEC2 Missense_Mutation p.H291P 0.12 deleterious(0) benign(0.187) TCGA-MP-A4SV-01 X 149638282 149638282 T A MAMLD1 Missense_Mutation p.V121E 0.12 tolerated(0.08) benign(0.394) TCGA-MP-A4SV-01 X 30237513 30237513 A G MAGEB2 Silent p.Q272Q 0.44 TCGA-MP-A4SV-01 X 48209460 48209460 C - SSX3 Frame_Shift_Del p.G143Efs*11 0.36 TCGA-MP-A4SV-01 X 50051844 50051844 C A CCNB3 Silent p.T225T 0.12 TCGA-MP-A4SV-01 X 51640673 51640673 C T MAGED1 Missense_Mutation p.T562I 0.08 tolerated_low_confidence(0.06) probably_damaging(0.947) TCGA-MP-A4SV-01 X 53222367 53222367 C T KDM5C Missense_Mutation p.A1489T 0.55 tolerated_low_confidence(0.57) benign(0.039) TCGA-MP-A4SV-01 X 5821329 5821329 C T NLGN4X Missense_Mutation p.G464S 0.38 tolerated(0.13) probably_damaging(0.998) TCGA-MP-A4SV-01 X 73069253 73069253 G C XIST RNA 0.08 TCGA-MP-A4SV-01 X 73960838 73960838 C A KIAA2022 Missense_Mutation p.G1185V 0.09 tolerated(0.21) benign(0.014) TCGA-MP-A4SV-01 X 78426721 78426721 C A GPR174 Missense_Mutation p.P73T 0.65 deleterious(0) probably_damaging(1) TCGA-MP-A4SV-01 X 82763436 82763436 A T POU3F4 Missense_Mutation p.Q35L 0.56 tolerated(0.29) benign(0.101) TCGA-MP-A4SV-01 X 86869563 86869563 T G KLHL4 Nonsense_Mutation p.Y239* 0.24 TCGA-MP-A4SV-01 X 86872977 86872977 C A KLHL4 Missense_Mutation p.A257D 0.18 tolerated(0.09) possibly_damaging(0.691) TCGA-MP-A4SV-01 X 88008501 88008501 C A CPXCR1 Missense_Mutation p.T29K 0.53 tolerated(0.05) possibly_damaging(0.895) TCGA-MP-A4SV-01 X 88009103 88009103 C T CPXCR1 Missense_Mutation p.R230C 0.37 deleterious(0.01) benign(0.356) TCGA-MP-A4SV-01 Y 4967199 4967199 G T PCDH11Y Missense_Mutation p.S527I 0.11 deleterious(0) possibly_damaging(0.517) TCGA-MP-A4SW-01 10 124345674 124345674 G A DMBT1 Missense_Mutation p.D520N 0.10 deleterious(0.03) unknown(0) TCGA-MP-A4SW-01 10 5567196 5567196 C T CALML3 Missense_Mutation p.R50W 0.11 deleterious_low_confidence(0) possibly_damaging(0.842) TCGA-MP-A4SW-01 11 16068085 16068085 C A SOX6 Missense_Mutation p.G533V 0.15 deleterious(0.05) probably_damaging(0.978) TCGA-MP-A4SW-01 11 47311440 47311440 G T MADD Nonsense_Mutation p.E947* 0.28 TCGA-MP-A4SW-01 12 1022618 1022618 C G RAD52 Missense_Mutation p.G399A 0.12 tolerated(0.27) benign(0.033) TCGA-MP-A4SW-01 12 11286342 11286342 A G TAS2R30 Silent p.L168L 0.06 TCGA-MP-A4SW-01 12 120650261 120650261 G A PXN Silent p.G558G 0.18 TCGA-MP-A4SW-01 12 13716483 13716483 G A GRIN2B Missense_Mutation p.T1230M 0.05 deleterious(0.02) benign(0.206) TCGA-MP-A4SW-01 12 52775274 52775274 C T KRT84 Silent p.T316T 0.14 TCGA-MP-A4SW-01 12 53427591 53427591 T C EIF4B Silent p.G327G 0.31 TCGA-MP-A4SW-01 12 6103065 6103065 G A VWF Silent p.N2187N 0.28 TCGA-MP-A4SW-01 13 107145365 107145365 C T EFNB2 3'UTR 0.12 TCGA-MP-A4SW-01 13 42748264 42748264 C T DGKH Missense_Mutation p.A479V 0.18 tolerated(0.35) benign(0.028) TCGA-MP-A4SW-01 14 106208462 106208462 C G IGHG1 Silent p.V146V 0.20 TCGA-MP-A4SW-01 14 21798405 21798405 A C RPGRIP1 Intron 0.36 TCGA-MP-A4SW-01 14 76906056 76906056 C T ESRRB Silent p.C120C 0.25 TCGA-MP-A4SW-01 15 35222464 35222464 G A AQR Silent p.L337L 0.09 TCGA-MP-A4SW-01 15 58285002 58285002 G A ALDH1A2 Silent p.P233P 0.31 TCGA-MP-A4SW-01 16 31012888 31012888 C T STX1B Missense_Mutation p.V23M 0.11 tolerated(0.14) benign(0.022) TCGA-MP-A4SW-01 16 31072956 31072956 C A ZNF668 Missense_Mutation p.N48K 0.16 unknown(0) TCGA-MP-A4SW-01 16 31230733 31230733 G A TRIM72 Missense_Mutation p.A204T 0.09 tolerated(0.06) possibly_damaging(0.826) TCGA-MP-A4SW-01 17 4500520 4500520 C T SMTNL2 Silent p.C387C 0.19 TCGA-MP-A4SW-01 17 4849177 4849177 G C PFN1 3'UTR 0.15 TCGA-MP-A4SW-01 18 6992567 6992567 C A LAMA1 Nonsense_Mutation p.E1721* 0.18 TCGA-MP-A4SW-01 19 14862341 14862341 T A EMR2 Missense_Mutation p.K644M 0.09 deleterious(0) probably_damaging(0.994) TCGA-MP-A4SW-01 19 18710390 18710390 A C CRLF1 Missense_Mutation p.C128G 0.07 deleterious(0.02) probably_damaging(0.998) TCGA-MP-A4SW-01 19 50661593 50661595 TCT CC IZUMO2 Frame_Shift_Del p.E144Rfs*85 0.14 TCGA-MP-A4SW-01 19 52537030 52537030 G A ZNF432 Silent p.F634F 0.09 TCGA-MP-A4SW-01 19 52715982 52715982 C T PPP2R1A Missense_Mutation p.R183W 0.35 deleterious(0) probably_damaging(1) TCGA-MP-A4SW-01 19 58371288 58371288 C T ZNF587 Missense_Mutation p.S503F 0.12 tolerated(0.29) benign(0.012) TCGA-MP-A4SW-01 19 9067667 9067667 T A MUC16 Silent p.A6593A 0.18 TCGA-MP-A4SW-01 1 110051193 110051193 G T AMIGO1 Nonsense_Mutation p.Y114* 0.19 TCGA-MP-A4SW-01 1 145328378 145328378 T G NBPF10 Missense_Mutation p.I1409S 0.12 benign(0.146) TCGA-MP-A4SW-01 1 150549905 150549905 C A MCL1 Silent p.L333L 0.12 TCGA-MP-A4SW-01 1 176668716 176668716 T C PAPPA2 Missense_Mutation p.F1076S 0.08 deleterious(0.01) probably_damaging(0.981) TCGA-MP-A4SW-01 1 17690071 17690071 G A PADI4 Missense_Mutation p.V605I 0.10 tolerated(1) benign(0.004) TCGA-MP-A4SW-01 1 178411963 178411963 G A RASAL2 Missense_Mutation p.G361S 0.05 deleterious(0.01) probably_damaging(0.991) TCGA-MP-A4SW-01 1 181741329 181741329 G A CACNA1E Missense_Mutation p.V1701M 0.12 deleterious(0.01) possibly_damaging(0.867) TCGA-MP-A4SW-01 1 22176603 22176603 G A HSPG2 Silent p.L2459L 0.13 TCGA-MP-A4SW-01 1 223994607 223994607 C G TP53BP2 Missense_Mutation p.E139Q 0.25 deleterious(0) possibly_damaging(0.697) TCGA-MP-A4SW-01 1 247737762 247737762 G A GCSAML 3'UTR 0.07 TCGA-MP-A4SW-01 1 248458808 248458808 G A OR2T12 Missense_Mutation p.L25F 0.06 tolerated(0.06) benign(0.32) TCGA-MP-A4SW-01 1 27216426 27216426 G A GPN2 Silent p.Y54Y 0.17 TCGA-MP-A4SW-01 1 4772619 4772619 C T AJAP1 Missense_Mutation p.T230M 0.20 deleterious(0.03) benign(0.003) TCGA-MP-A4SW-01 1 55148431 55148431 C T MROH7 Silent p.V828V 0.09 TCGA-MP-A4SW-01 1 6880310 6880310 G A CAMTA1 Missense_Mutation p.D39N 0.07 deleterious_low_confidence(0.03) probably_damaging(0.98) TCGA-MP-A4SW-01 20 32369123 32369123 C T ZNF341 Missense_Mutation p.S543F 0.08 deleterious(0) possibly_damaging(0.642) TCGA-MP-A4SW-01 21 10952925 10952925 G T TPTE Missense_Mutation p.S91Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-MP-A4SW-01 22 21989500 21989500 G C CCDC116 Missense_Mutation p.R383T 0.15 tolerated(0.3) benign(0.03) TCGA-MP-A4SW-01 22 26422429 26422429 G C MYO18B Silent p.G2163G 0.19 TCGA-MP-A4SW-01 22 50720743 50720743 C A PLXNB2 Splice_Site p.X996_splice 0.17 TCGA-MP-A4SW-01 2 11332817 11332817 C G ROCK2 Missense_Mutation p.E1237Q 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-MP-A4SW-01 2 132290639 132290644 AATGGT - CCDC74A Splice_Site p.X336_splice 0.19 TCGA-MP-A4SW-01 2 179589178 179589178 G A TTN Missense_Mutation p.P6975L 0.13 TCGA-MP-A4SW-01 2 210557457 210557457 C T MAP2 Missense_Mutation p.P188L 0.09 deleterious_low_confidence(0) possibly_damaging(0.87) TCGA-MP-A4SW-01 2 234173588 234173588 A G ATG16L1 Missense_Mutation p.D147G 0.14 tolerated(0.21) benign(0.364) TCGA-MP-A4SW-01 3 109049515 109049515 G A DPPA4 Silent p.L179L 0.26 TCGA-MP-A4SW-01 3 142402845 142402845 C G PLS1 Intron 0.09 TCGA-MP-A4SW-01 3 48605322 48605322 A T COL7A1 Silent p.G2626G 0.35 TCGA-MP-A4SW-01 4 104640635 104640635 C T TACR3 Silent p.A66A 0.12 TCGA-MP-A4SW-01 4 113436004 113436004 G A NEUROG2 Missense_Mutation p.P210S 0.19 tolerated_low_confidence(0.14) benign(0.018) TCGA-MP-A4SW-01 4 154216475 154216475 C A TRIM2 Nonsense_Mutation p.S266* 0.38 TCGA-MP-A4SW-01 4 158254022 158254022 C T GRIA2 Missense_Mutation p.R312C 0.18 deleterious(0.01) possibly_damaging(0.816) TCGA-MP-A4SW-01 4 169340496 169340496 C T DDX60L Missense_Mutation p.R856H 0.19 tolerated(0.17) benign(0.022) TCGA-MP-A4SW-01 4 1956924 1956924 A G WHSC1 Missense_Mutation p.Y792C 0.13 deleterious(0) probably_damaging(0.999) TCGA-MP-A4SW-01 4 2831500 2831500 C T SH3BP2 Silent p.P346P 0.09 TCGA-MP-A4SW-01 4 44682821 44682821 G A GUF1 Missense_Mutation p.E130K 0.10 tolerated(0.56) benign(0.006) TCGA-MP-A4SW-01 5 140626789 140626789 G A PCDHB15 Missense_Mutation p.R548Q 0.23 tolerated_low_confidence(0.08) possibly_damaging(0.645) TCGA-MP-A4SW-01 5 158140136 158140136 G A EBF1 Missense_Mutation p.A404V 0.27 deleterious_low_confidence(0) possibly_damaging(0.83) TCGA-MP-A4SW-01 5 40771891 40771891 C A PRKAA1 Silent p.V161V 0.10 TCGA-MP-A4SW-01 5 65054569 65054569 G C NLN Missense_Mutation p.D73H 0.05 deleterious(0) probably_damaging(0.958) TCGA-MP-A4SW-01 6 27799293 27799293 C T HIST1H4K Missense_Mutation p.G5S 0.19 tolerated_low_confidence(0.08) unknown(0) TCGA-MP-A4SW-01 6 85446667 85446667 A T TBX18 Silent p.T520T 0.04 TCGA-MP-A4SW-01 7 157370783 157370783 G A PTPRN2 Missense_Mutation p.A849V 0.10 tolerated(1) benign(0.007) TCGA-MP-A4SW-01 7 24718860 24718860 G A MPP6 Missense_Mutation p.E409K 0.23 deleterious(0) probably_damaging(0.991) TCGA-MP-A4SW-01 7 45954501 45954501 A G IGFBP3 Missense_Mutation p.V271A 0.24 deleterious(0) probably_damaging(0.999) TCGA-MP-A4SW-01 7 55259515 55259515 T G EGFR Missense_Mutation p.L858R 0.57 deleterious(0) probably_damaging(1) TCGA-MP-A4SW-01 7 57194319 57194319 T A ZNF479 Missense_Mutation p.Y49F 0.18 deleterious(0.02) probably_damaging(0.996) TCGA-MP-A4SW-01 7 82538284 82538284 C G PCLO Missense_Mutation p.R4449T 0.15 unknown(0) TCGA-MP-A4SW-01 8 146278517 146278517 C T C8orf33 Missense_Mutation p.P130S 0.06 tolerated(0.34) benign(0.245) TCGA-MP-A4SW-01 8 68074105 68074105 C T CSPP1 Silent p.L861L 0.04 TCGA-MP-A4SW-01 9 101014136 101014136 G A TBC1D2 Missense_Mutation p.P148S 0.05 tolerated(1) benign(0.02) TCGA-MP-A4SW-01 9 33026883 33026883 G T DNAJA1 Nonsense_Mutation p.E69* 0.05 TCGA-MP-A4SW-01 X 130419264 130419264 T A IGSF1 Missense_Mutation p.I186F 0.05 deleterious(0) possibly_damaging(0.886) TCGA-MP-A4SW-01 X 131573568 131573568 C G MBNL3 Missense_Mutation p.Q24H 0.08 deleterious(0) probably_damaging(0.996) TCGA-MP-A4SW-01 X 23397975 23397975 G A PTCHD1 Missense_Mutation p.E207K 0.06 tolerated(0.58) benign(0.018) TCGA-MP-A4SW-01 X 47045187 47045187 G T RBM10 Nonsense_Mutation p.E810* 0.31 TCGA-MP-A4SY-01 10 116331142 116331142 C T ABLIM1 Missense_Mutation p.R196Q 0.07 deleterious(0.01) probably_damaging(0.995) TCGA-MP-A4SY-01 10 127798373 127798373 C A ADAM12 Nonsense_Mutation p.E217* 0.06 TCGA-MP-A4SY-01 10 15614366 15614366 C T ITGA8 Silent p.L827L 0.12 TCGA-MP-A4SY-01 10 30915771 30915771 C T LYZL2 Missense_Mutation p.C71Y 0.04 deleterious(0.01) benign(0.048) TCGA-MP-A4SY-01 10 43089103 43089103 T A ZNF33B Missense_Mutation p.Q432L 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-MP-A4SY-01 10 43650598 43650598 A G CSGALNACT2 Translation_Start_Site p.M1? 0.13 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-MP-A4SY-01 10 50953495 50953495 G T OGDHL Missense_Mutation p.F508L 0.08 deleterious(0) probably_damaging(0.914) TCGA-MP-A4SY-01 10 55782910 55782910 C A PCDH15 Missense_Mutation p.L756F 0.09 deleterious(0) probably_damaging(0.996) TCGA-MP-A4SY-01 10 76989401 76989401 G A VDAC2 Splice_Site p.X261_splice 0.10 TCGA-MP-A4SY-01 10 7763681 7763681 G T ITIH2 Missense_Mutation p.D270Y 0.06 deleterious(0) possibly_damaging(0.806) TCGA-MP-A4SY-01 10 92672613 92672613 G A ANKRD1 3'UTR 0.12 TCGA-MP-A4SY-01 10 98715318 98715318 C T LCOR Missense_Mutation p.S314L 0.10 tolerated(0.37) possibly_damaging(0.587) TCGA-MP-A4SY-01 11 114569398 114569398 G C NXPE2 Missense_Mutation p.C255S 0.12 deleterious(0.04) possibly_damaging(0.859) TCGA-MP-A4SY-01 11 117267878 117267878 T C CEP164 Missense_Mutation p.L1117P 0.15 deleterious(0) probably_damaging(1) TCGA-MP-A4SY-01 11 119142461 119142461 C G CBL Missense_Mutation p.L154V 0.06 deleterious(0) probably_damaging(0.984) TCGA-MP-A4SY-01 11 122017283 122017283 C A MIRLET7A2 RNA 0.09 TCGA-MP-A4SY-01 11 124792302 124792302 G T HEPACAM Silent p.L310L 0.05 TCGA-MP-A4SY-01 11 125875949 125875949 G A CDON Missense_Mutation p.P519L 0.13 deleterious(0.02) benign(0.26) TCGA-MP-A4SY-01 11 129751682 129751682 C A NFRKB Missense_Mutation p.A445S 0.11 tolerated(0.05) unknown(0) TCGA-MP-A4SY-01 11 1643245 1643245 C A KRTAP5-4 Missense_Mutation p.G27C 0.21 deleterious_low_confidence(0) unknown(0) TCGA-MP-A4SY-01 11 44089220 44089220 T G ACCS Missense_Mutation p.C15G 0.11 tolerated_low_confidence(0.14) benign(0.003) TCGA-MP-A4SY-01 11 44956548 44956548 C T TP53I11 Missense_Mutation p.E153K 0.09 deleterious(0.01) benign(0.355) TCGA-MP-A4SY-01 11 55653532 55653532 C G TRIM51 Intron 0.12 TCGA-MP-A4SY-01 11 6244451 6244451 G C FAM160A2 Silent p.L265L 0.14 TCGA-MP-A4SY-01 11 64940302 64940302 C T SPDYC Missense_Mutation p.P222S 0.14 tolerated(0.22) benign(0.008) TCGA-MP-A4SY-01 11 68529098 68529098 G A CPT1A Missense_Mutation p.R645C 0.04 deleterious(0) probably_damaging(0.983) TCGA-MP-A4SY-01 11 77301280 77301280 C T AQP11 Silent p.L81L 0.10 TCGA-MP-A4SY-01 11 88300586 88300586 G A GRM5 Silent p.T755T 0.10 TCGA-MP-A4SY-01 11 9759781 9759781 C T SWAP70 Missense_Mutation p.R368C 0.11 deleterious(0.04) possibly_damaging(0.855) TCGA-MP-A4SY-01 12 103248983 103248983 G A PAH Missense_Mutation p.L213F 0.13 deleterious(0) probably_damaging(0.996) TCGA-MP-A4SY-01 12 120214502 120214502 T G CIT Missense_Mutation p.T604P 0.19 deleterious(0.05) benign(0.025) TCGA-MP-A4SY-01 12 123011439 123011439 G C RSRC2 5'UTR 0.15 TCGA-MP-A4SY-01 12 132334399 132334399 C T MMP17 Silent p.R419R 0.17 TCGA-MP-A4SY-01 12 133324548 133324548 C A ANKLE2 Missense_Mutation p.C367F 0.16 deleterious(0) probably_damaging(0.976) TCGA-MP-A4SY-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.19 deleterious(0) benign(0.361) TCGA-MP-A4SY-01 12 31256834 31256834 T C DDX11 Missense_Mutation p.F927S 0.14 deleterious_low_confidence(0) benign(0.307) TCGA-MP-A4SY-01 12 332396 332396 C T SLC6A13 Missense_Mutation p.G439E 0.08 deleterious(0) probably_damaging(1) TCGA-MP-A4SY-01 12 5154148 5154148 C T KCNA5 Missense_Mutation p.R279C 0.14 deleterious(0) possibly_damaging(0.53) TCGA-MP-A4SY-01 12 6619539 6619539 T G NCAPD2 Intron 0.03 TCGA-MP-A4SY-01 12 7187961 7187961 T C C1R Missense_Mutation p.T613A 0.12 tolerated(0.1) benign(0.002) TCGA-MP-A4SY-01 12 98849563 98849563 A T SLC9A7P1 RNA 0.09 TCGA-MP-A4SY-01 13 20716810 20716810 G C GJA3 Missense_Mutation p.F206L 0.13 deleterious(0) probably_damaging(0.968) TCGA-MP-A4SY-01 13 24242153 24242153 G C TNFRSF19 Missense_Mutation p.E257D 0.33 tolerated(1) benign(0.003) TCGA-MP-A4SY-01 13 26343364 26343364 A G ATP8A2 Silent p.A855A 0.23 TCGA-MP-A4SY-01 13 35747693 35747693 G T NBEA Nonsense_Mutation p.E1506* 0.14 TCGA-MP-A4SY-01 13 36202279 36202279 A T NBEA Missense_Mutation p.Y2504F 0.20 tolerated(0.06) probably_damaging(0.921) TCGA-MP-A4SY-01 13 42888032 42888032 A G AKAP11 Missense_Mutation p.D1787G 0.12 deleterious(0) probably_damaging(1) TCGA-MP-A4SY-01 13 58208912 58208912 C A PCDH17 Silent p.I744I 0.10 TCGA-MP-A4SY-01 13 77799691 77799691 T C MYCBP2 Splice_Site p.X875_splice 0.09 TCGA-MP-A4SY-01 14 106586374 106586374 C G IGHV3-13 Silent p.L37L 0.15 TCGA-MP-A4SY-01 14 19563492 19563492 C A POTEG Missense_Mutation p.L336I 0.05 tolerated(0.71) benign(0.027) TCGA-MP-A4SY-01 14 20528894 20528894 C A OR4L1 Missense_Mutation p.H231N 0.18 deleterious(0.05) benign(0) TCGA-MP-A4SY-01 14 20692722 20692722 C T OR11H6 Missense_Mutation p.P285L 0.15 deleterious(0.04) possibly_damaging(0.794) TCGA-MP-A4SY-01 14 23944419 23944419 A T NGDN Missense_Mutation p.M62L 0.08 tolerated(0.35) benign(0.007) TCGA-MP-A4SY-01 14 90778852 90778852 C T NRDE2 Missense_Mutation p.R148H 0.05 tolerated(0.18) benign(0.009) TCGA-MP-A4SY-01 14 94772468 94772468 C A SERPINA6 Missense_Mutation p.L324F 0.10 deleterious(0.03) benign(0.427) TCGA-MP-A4SY-01 15 25486747 25486747 C T SNORD115-40 5'Flank 0.11 TCGA-MP-A4SY-01 15 41823316 41823316 C T RPAP1 Missense_Mutation p.G283E 0.12 tolerated(0.66) benign(0.004) TCGA-MP-A4SY-01 15 45059749 45059749 G A TRIM69 Missense_Mutation p.D428N 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-MP-A4SY-01 15 45404770 45404770 C T DUOX2 Missense_Mutation p.V103I 0.07 deleterious(0) probably_damaging(0.997) TCGA-MP-A4SY-01 15 69327747 69327747 A T NOX5 Missense_Mutation p.Q303H 0.15 tolerated(0.3) benign(0.012) TCGA-MP-A4SY-01 15 75499660 75499660 A T C15orf39 Missense_Mutation p.Q424L 0.11 deleterious(0.04) benign(0.145) TCGA-MP-A4SY-01 16 18823362 18823362 G C SMG1 Nonsense_Mutation p.S3570* 0.13 TCGA-MP-A4SY-01 16 46694361 46694361 G C VPS35 3'UTR 0.07 TCGA-MP-A4SY-01 16 70894023 70894023 G A HYDIN Missense_Mutation p.A4026V 0.16 possibly_damaging(0.866) TCGA-MP-A4SY-01 16 71212867 71212867 G C HYDIN Silent p.V115V 0.08 TCGA-MP-A4SY-01 16 72110963 72110963 A T HPR Missense_Mutation p.T344S 0.10 tolerated(0.12) possibly_damaging(0.811) TCGA-MP-A4SY-01 16 77389917 77389917 G T ADAMTS18 Silent p.I460I 0.17 TCGA-MP-A4SY-01 17 29556469 29556469 G T NF1 Missense_Mutation p.D946Y 0.13 deleterious(0) probably_damaging(0.996) TCGA-MP-A4SY-01 17 39553699 39553699 C A KRT31 Silent p.L31L 0.14 TCGA-MP-A4SY-01 17 40997280 40997280 C T AOC2 Missense_Mutation p.R213C 0.04 deleterious(0.02) benign(0.022) TCGA-MP-A4SY-01 17 41926224 41926224 C T CD300LG Silent p.P114P 0.06 TCGA-MP-A4SY-01 17 56166763 56166763 C T DYNLL2 3'UTR 0.10 TCGA-MP-A4SY-01 17 66986005 66986005 T C ABCA9 Missense_Mutation p.K1302E 0.21 deleterious(0) possibly_damaging(0.78) TCGA-MP-A4SY-01 17 76799722 76799722 G A USP36 Missense_Mutation p.P852L 0.06 tolerated_low_confidence(0.54) benign(0.003) TCGA-MP-A4SY-01 18 19761486 19761486 G A GATA6 Missense_Mutation p.A459T 0.05 tolerated(0.06) possibly_damaging(0.547) TCGA-MP-A4SY-01 18 29039046 29039046 T A DSG3 Silent p.L141L 0.14 TCGA-MP-A4SY-01 18 29039060 29039060 A G DSG3 Missense_Mutation p.K146R 0.14 tolerated(0.38) probably_damaging(1) TCGA-MP-A4SY-01 19 11144149 11144149 C G SMARCA4 Missense_Mutation p.R1244G 0.15 possibly_damaging(0.45) TCGA-MP-A4SY-01 19 12384377 12384377 A G ZNF44 Silent p.S279S 0.09 TCGA-MP-A4SY-01 19 12920891 12920891 G A RNASEH2A Missense_Mutation p.V140M 0.07 deleterious(0) probably_damaging(0.991) TCGA-MP-A4SY-01 19 16319899 16319899 G A AP1M1 Missense_Mutation p.V153I 0.15 tolerated(0.1) benign(0.108) TCGA-MP-A4SY-01 19 50031856 50031856 G T RCN3 Missense_Mutation p.A43S 0.09 tolerated(0.7) benign(0.334) TCGA-MP-A4SY-01 19 53686154 53686154 C G ZNF665 5'UTR 0.07 TCGA-MP-A4SY-01 19 53770827 53770827 G T VN1R4 Missense_Mutation p.S31Y 0.08 tolerated(0.22) benign(0.022) TCGA-MP-A4SY-01 19 54403952 54403952 C T PRKCG Silent p.P508P 0.11 TCGA-MP-A4SY-01 19 5784089 5784089 G C CTB-54O9.9 3'UTR 0.05 TCGA-MP-A4SY-01 19 57868948 57868948 A G ZNF304 Missense_Mutation p.S571G 0.13 deleterious(0.02) probably_damaging(0.997) TCGA-MP-A4SY-01 19 58038939 58038939 C A ZNF549 5'UTR 0.10 TCGA-MP-A4SY-01 19 6686782 6686784 AAG - C3 In_Frame_Del p.L1207del 0.11 TCGA-MP-A4SY-01 19 8999024 8999024 C A MUC16 Splice_Site p.X13607_splice 0.11 TCGA-MP-A4SY-01 19 9086080 9086080 G T MUC16 Missense_Mutation p.P1912H 0.08 unknown(0) TCGA-MP-A4SY-01 19 9525300 9525300 T A ZNF266 Missense_Mutation p.N101Y 0.14 deleterious(0) benign(0.066) TCGA-MP-A4SY-01 1 100672076 100672076 C A DBT Missense_Mutation p.Q378H 0.08 tolerated(0.12) benign(0.014) TCGA-MP-A4SY-01 1 12887539 12887539 G C PRAMEF11 Silent p.P106P 0.11 TCGA-MP-A4SY-01 1 12887540 12887540 G T PRAMEF11 Missense_Mutation p.P106H 0.11 deleterious(0) probably_damaging(0.973) TCGA-MP-A4SY-01 1 151021310 151021310 G A C1orf56 Silent p.V329V 0.09 TCGA-MP-A4SY-01 1 154218748 154218748 C G UBAP2L Missense_Mutation p.P304R 0.10 tolerated(0.06) unknown(0) TCGA-MP-A4SY-01 1 157522168 157522168 C A FCRL5 5'UTR 0.17 TCGA-MP-A4SY-01 1 161165373 161165373 A C ADAMTS4 Missense_Mutation p.N381K 0.04 tolerated(0.18) probably_damaging(1) TCGA-MP-A4SY-01 1 16953684 16953684 T C CROCCP2 3'Flank 0.06 TCGA-MP-A4SY-01 1 179100521 179100521 C T ABL2 Missense_Mutation p.E106K 0.15 deleterious(0) possibly_damaging(0.601) TCGA-MP-A4SY-01 1 180775292 180775292 A T XPR1 Missense_Mutation p.E181V 0.10 deleterious(0) possibly_damaging(0.507) TCGA-MP-A4SY-01 1 186278054 186278054 T C PRG4 Missense_Mutation p.I1068T 0.09 unknown(0) TCGA-MP-A4SY-01 1 196800951 196800951 T C CFHR1 Missense_Mutation p.I272T 0.16 tolerated(0.16) benign(0.142) TCGA-MP-A4SY-01 1 197026510 197026510 T A F13B Silent p.I297I 0.27 TCGA-MP-A4SY-01 1 213003527 213003527 G T C1orf227 3'UTR 0.25 TCGA-MP-A4SY-01 1 231067531 231067531 A T TTC13 Missense_Mutation p.M359K 0.08 tolerated(0.96) benign(0.014) TCGA-MP-A4SY-01 1 238090679 238090679 G A RP11-193H5.1 RNA 0.16 TCGA-MP-A4SY-01 1 247921334 247921334 C A OR1C1 Silent p.A125A 0.08 TCGA-MP-A4SY-01 1 248039717 248039717 A G TRIM58 Missense_Mutation p.I463V 0.12 deleterious(0.05) benign(0) TCGA-MP-A4SY-01 1 3328998 3328998 C G PRDM16 Missense_Mutation p.A746G 0.10 tolerated(0.42) benign(0.003) TCGA-MP-A4SY-01 1 62921109 62921109 C T DOCK7 Missense_Mutation p.M2102I 0.14 tolerated_low_confidence(0.54) benign(0.001) TCGA-MP-A4SY-01 1 66831407 66831407 G T PDE4B Missense_Mutation p.V448F 0.14 deleterious(0) probably_damaging(1) TCGA-MP-A4SY-01 1 70503924 70503924 G A LRRC7 Nonsense_Mutation p.W768* 0.07 TCGA-MP-A4SY-01 1 85462516 85462516 G T MCOLN2 Missense_Mutation p.P14T 0.10 tolerated(0.3) benign(0.002) TCGA-MP-A4SY-01 1 87797801 87797801 C G LMO4 Missense_Mutation p.L35V 0.10 deleterious(0) probably_damaging(0.987) TCGA-MP-A4SY-01 1 89843692 89843692 G A GBP6 Missense_Mutation p.A117T 0.05 tolerated(0.07) possibly_damaging(0.831) TCGA-MP-A4SY-01 1 97278356 97278356 G A PTBP2 Silent p.E420E 0.08 TCGA-MP-A4SY-01 20 30366710 30366710 C A TPX2 Missense_Mutation p.P326H 0.10 deleterious(0.02) possibly_damaging(0.8) TCGA-MP-A4SY-01 20 48156158 48156158 G A PTGIS Missense_Mutation p.R208C 0.39 deleterious(0) probably_damaging(1) TCGA-MP-A4SY-01 20 57392721 57392721 A T MIR296 RNA 0.10 TCGA-MP-A4SY-01 20 61916180 61916180 G T ARFGAP1 Intron 0.12 TCGA-MP-A4SY-01 21 16340347 16340347 C A NRIP1 Missense_Mutation p.S56I 0.07 tolerated(0.4) benign(0.261) TCGA-MP-A4SY-01 21 31655256 31655256 G T KRTAP24-1 5'UTR 0.11 TCGA-MP-A4SY-01 21 45681097 45681097 C T DNMT3L Missense_Mutation p.D16N 0.08 deleterious(0.02) possibly_damaging(0.515) TCGA-MP-A4SY-01 22 16287775 16287775 C A POTEH Silent p.G37G 0.09 TCGA-MP-A4SY-01 22 18300359 18300359 C A MICAL3 Nonsense_Mutation p.E1690* 0.19 TCGA-MP-A4SY-01 22 23040598 23040598 G C IGLV2-23 Splice_Site p.X16_splice 0.14 TCGA-MP-A4SY-01 22 29735036 29735036 G C AP1B1 Silent p.L702L 0.07 TCGA-MP-A4SY-01 22 38201991 38201991 A G H1F0 Missense_Mutation p.K147R 0.13 tolerated(1) unknown(0) TCGA-MP-A4SY-01 2 167142965 167142965 C T SCN9A Missense_Mutation p.G495R 0.07 tolerated(0.18) benign(0.016) TCGA-MP-A4SY-01 2 179567187 179567187 C T TTN Missense_Mutation p.D10143N 0.06 TCGA-MP-A4SY-01 2 179650817 179650817 C A TTN Missense_Mutation p.D710Y 0.20 TCGA-MP-A4SY-01 2 180008450 180008450 C A SESTD1 Nonsense_Mutation p.E240* 0.14 TCGA-MP-A4SY-01 2 203072017 203072017 C G SUMO1 Missense_Mutation p.E89Q 0.13 deleterious(0) possibly_damaging(0.886) TCGA-MP-A4SY-01 2 215855593 215855593 C A ABCA12 Missense_Mutation p.D1153Y 0.12 deleterious(0) probably_damaging(0.99) TCGA-MP-A4SY-01 2 216226174 216226174 T G FN1 3'UTR 0.11 TCGA-MP-A4SY-01 2 220496696 220496696 G T SLC4A3 Missense_Mutation p.R300L 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-MP-A4SY-01 2 26152910 26152910 G A KIF3C Missense_Mutation p.R677W 0.09 probably_damaging(0.996) TCGA-MP-A4SY-01 2 26739456 26739456 G T OTOF Nonsense_Mutation p.C113* 0.06 TCGA-MP-A4SY-01 2 27481716 27481716 G T SLC30A3 Missense_Mutation p.P61Q 0.24 tolerated(0.12) benign(0.019) TCGA-MP-A4SY-01 2 70520827 70520827 G A SNRPG 5'UTR 0.15 TCGA-MP-A4SY-01 2 71043961 71043961 C T CLEC4F Silent p.K184K 0.11 TCGA-MP-A4SY-01 3 10886026 10886026 G A SLC6A11 Missense_Mutation p.G251R 0.09 deleterious(0) probably_damaging(1) TCGA-MP-A4SY-01 3 111639233 111639233 A T PHLDB2 Missense_Mutation p.E656D 0.11 tolerated(0.35) benign(0.008) TCGA-MP-A4SY-01 3 142098971 142098971 T A XRN1 Missense_Mutation p.S890C 0.11 deleterious(0.01) benign(0.017) TCGA-MP-A4SY-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.15 tolerated(0.11) possibly_damaging(0.529) TCGA-MP-A4SY-01 3 38050763 38050763 C T PLCD1 Missense_Mutation p.G557R 0.20 deleterious(0) possibly_damaging(0.88) TCGA-MP-A4SY-01 3 39156148 39156148 G T TTC21A Missense_Mutation p.G211W 0.12 deleterious(0) possibly_damaging(0.827) TCGA-MP-A4SY-01 3 44541285 44541285 T C ZNF852 Silent p.K328K 0.22 TCGA-MP-A4SY-01 3 47125821 47125821 C A SETD2 Nonsense_Mutation p.E1817* 0.20 TCGA-MP-A4SY-01 3 9911905 9911905 C A CIDEC Silent p.G113G 0.09 TCGA-MP-A4SY-01 4 102951124 102951124 G T BANK1 Missense_Mutation p.M534I 0.11 tolerated(0.63) benign(0.004) TCGA-MP-A4SY-01 4 108831573 108831573 T C SGMS2 Missense_Mutation p.F321S 0.11 deleterious(0) benign(0.139) TCGA-MP-A4SY-01 4 119631241 119631241 G C METTL14 Missense_Mutation p.L385F 0.09 deleterious(0.03) probably_damaging(0.991) TCGA-MP-A4SY-01 4 120166510 120166510 A G USP53 Missense_Mutation p.I55V 0.15 tolerated(0.13) benign(0.17) TCGA-MP-A4SY-01 4 148545212 148545212 G C TMEM184C Splice_Site p.X85_splice 0.15 TCGA-MP-A4SY-01 4 158255237 158255237 C A GRIA2 Missense_Mutation p.L411I 0.10 tolerated(0.55) benign(0.011) TCGA-MP-A4SY-01 4 187455687 187455687 G A MTNR1A Missense_Mutation p.A70V 0.10 deleterious(0.01) probably_damaging(0.973) TCGA-MP-A4SY-01 4 30725202 30725202 C T PCDH7 Missense_Mutation p.P720S 0.24 deleterious(0.01) probably_damaging(0.91) TCGA-MP-A4SY-01 4 55946082 55946082 G A KDR 3'UTR 0.14 TCGA-MP-A4SY-01 4 62453109 62453109 G T LPHN3 Nonsense_Mutation p.E74* 0.10 TCGA-MP-A4SY-01 4 74283994 74283994 C A ALB Missense_Mutation p.L540I 0.13 tolerated(0.21) benign(0.018) TCGA-MP-A4SY-01 4 85617130 85617130 G A WDFY3 Missense_Mutation p.P2965L 0.11 deleterious(0) probably_damaging(1) TCGA-MP-A4SY-01 5 110428032 110428032 G T WDR36 Missense_Mutation p.A16S 0.22 deleterious_low_confidence(0) benign(0.002) TCGA-MP-A4SY-01 5 121309952 121309952 G A SRFBP1 Missense_Mutation p.R33K 0.08 deleterious(0.01) probably_damaging(0.996) TCGA-MP-A4SY-01 5 1246003 1246003 G - SLC6A18 Frame_Shift_Del p.A567Rfs*? 0.13 TCGA-MP-A4SY-01 5 141016186 141016186 G A HDAC3 Missense_Mutation p.P23S 0.39 deleterious(0) probably_damaging(0.938) TCGA-MP-A4SY-01 5 142680131 142680131 T A NR3C1 Missense_Mutation p.T557S 0.09 tolerated(1) benign(0.001) TCGA-MP-A4SY-01 5 16681427 16681427 T G MYO10 Missense_Mutation p.K1459Q 0.07 tolerated(0.15) probably_damaging(0.998) TCGA-MP-A4SY-01 5 176011589 176011589 G C CDHR2 Missense_Mutation p.E769D 0.05 tolerated(0.73) possibly_damaging(0.572) TCGA-MP-A4SY-01 5 176799114 176799114 G A RGS14 3'UTR 0.04 TCGA-MP-A4SY-01 5 178413862 178413862 A T GRM6 Missense_Mutation p.W493R 0.09 deleterious(0) probably_damaging(1) TCGA-MP-A4SY-01 5 26881636 26881636 T G CDH9 Missense_Mutation p.N660T 0.14 deleterious(0) probably_damaging(0.995) TCGA-MP-A4SY-01 5 32090217 32090217 G A PDZD2 Silent p.R2221R 0.07 TCGA-MP-A4SY-01 5 33546236 33546236 T C ADAMTS12 Silent p.T1458T 0.27 TCGA-MP-A4SY-01 5 52778794 52778794 G T FST Missense_Mutation p.S57I 0.19 tolerated(0.08) benign(0.023) TCGA-MP-A4SY-01 5 60195454 60195454 C T ERCC8 Missense_Mutation p.A240T 0.14 tolerated(0.72) benign(0.006) TCGA-MP-A4SY-01 5 71739752 71739752 T A ZNF366 Missense_Mutation p.Q689L 0.27 tolerated_low_confidence(0.29) benign(0) TCGA-MP-A4SY-01 5 98224786 98224786 G C CHD1 Silent p.A779A 0.31 TCGA-MP-A4SY-01 6 26459792 26459792 G C BTN2A1 Missense_Mutation p.E56Q 0.11 tolerated(0.08) probably_damaging(0.991) TCGA-MP-A4SY-01 6 27834926 27834926 C A HIST1H1B Missense_Mutation p.A128S 0.08 tolerated(1) unknown(0) TCGA-MP-A4SY-01 6 32064693 32064693 G A TNXB Missense_Mutation p.R313W 0.21 probably_damaging(0.988) TCGA-MP-A4SY-01 6 34789490 34789490 G T UHRF1BP1 Missense_Mutation p.Q35H 0.12 deleterious(0.02) possibly_damaging(0.819) TCGA-MP-A4SY-01 6 42976164 42976164 T A PPP2R5D Missense_Mutation p.V326D 0.11 deleterious(0) probably_damaging(1) TCGA-MP-A4SY-01 6 51751996 51751996 C A PKHD1 Missense_Mutation p.M2348I 0.13 tolerated(0.19) benign(0.001) TCGA-MP-A4SY-01 6 69684698 69684698 G T BAI3 Silent p.V523V 0.21 TCGA-MP-A4SY-01 6 74171583 74171583 C G MTO1 Missense_Mutation p.F2L 0.13 tolerated_low_confidence(0.19) benign(0.014) TCGA-MP-A4SY-01 6 74228304 74228304 C G EEF1A1 Missense_Mutation p.E268Q 0.08 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-MP-A4SY-01 6 75815007 75815007 C A COL12A1 Missense_Mutation p.R2727I 0.27 probably_damaging(0.996) TCGA-MP-A4SY-01 7 124464072 124464072 C G POT1 Missense_Mutation p.D617H 0.11 deleterious(0.01) benign(0.17) TCGA-MP-A4SY-01 7 124464073 124464073 T A POT1 Silent p.T616T 0.11 TCGA-MP-A4SY-01 7 141766520 141766520 G C MGAM Intron 0.08 TCGA-MP-A4SY-01 7 149529907 149529907 G A SSPO RNA 0.06 TCGA-MP-A4SY-01 7 154561152 154561152 A T DPP6 Silent p.A303A 0.09 TCGA-MP-A4SY-01 7 76109901 76109901 G T DTX2 Missense_Mutation p.Q25H 0.25 tolerated(0.05) benign(0.05) TCGA-MP-A4SY-01 7 79818422 79818422 G T GNAI1 Missense_Mutation p.G60C 0.09 deleterious(0) probably_damaging(1) TCGA-MP-A4SY-01 7 83095804 83095804 A G SEMA3E Silent p.H150H 0.10 TCGA-MP-A4SY-01 7 86820293 86820293 G C DMTF1 Missense_Mutation p.E482Q 0.10 deleterious(0.04) probably_damaging(0.959) TCGA-MP-A4SY-01 8 10466071 10466071 G T RP1L1 Missense_Mutation p.P1846Q 0.27 unknown(0) TCGA-MP-A4SY-01 8 133953596 133953596 G T TG Missense_Mutation p.G1681V 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-MP-A4SY-01 8 30694770 30694770 C T TEX15 Silent p.Q2627Q 0.04 TCGA-MP-A4SY-01 8 33371025 33371025 G C TTI2 5'UTR 0.06 TCGA-MP-A4SY-01 8 35608152 35608152 C T UNC5D Missense_Mutation p.P663L 0.05 deleterious(0.02) benign(0.114) TCGA-MP-A4SY-01 8 39604093 39604093 A C ADAM2 Nonsense_Mutation p.L691* 0.28 TCGA-MP-A4SY-01 8 42294630 42294630 C A SLC20A2 Missense_Mutation p.R467L 0.24 tolerated(0.33) benign(0.003) TCGA-MP-A4SY-01 8 42294715 42294715 C A SLC20A2 Missense_Mutation p.A439S 0.08 tolerated(0.13) possibly_damaging(0.874) TCGA-MP-A4SY-01 8 51664586 51664586 C T SNTG1 Missense_Mutation p.S437F 0.06 deleterious(0) probably_damaging(0.926) TCGA-MP-A4SY-01 8 89053550 89053550 C A MMP16 3'UTR 0.27 TCGA-MP-A4SY-01 9 111689719 111689719 C T IKBKAP Silent p.G106G 0.14 TCGA-MP-A4SY-01 9 125315750 125315750 A T OR1N2 Missense_Mutation p.N101I 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-MP-A4SY-01 9 125437626 125437626 A G OR1L3 Missense_Mutation p.Y73C 0.03 deleterious(0) possibly_damaging(0.827) TCGA-MP-A4SY-01 9 8340450 8340450 C A PTPRD Missense_Mutation p.A1716S 0.13 deleterious(0.02) probably_damaging(0.999) TCGA-MP-A4SY-01 9 90501788 90501788 G C SPATA31E1 Missense_Mutation p.V796L 0.19 tolerated(0.9) benign(0.004) TCGA-MP-A4SY-01 9 98231341 98231341 G C PTCH1 Missense_Mutation p.H648D 0.04 tolerated(0.49) possibly_damaging(0.831) TCGA-MP-A4SY-01 X 135426725 135426725 C G GPR112 Missense_Mutation p.S287C 0.11 deleterious(0) possibly_damaging(0.887) TCGA-MP-A4SY-01 X 153581235 153581235 T C FLNA Missense_Mutation p.E2095G 0.09 deleterious(0.01) benign(0.016) TCGA-MP-A4SY-01 X 69623832 69623832 A T KIF4A Missense_Mutation p.E913V 0.14 deleterious(0) possibly_damaging(0.883) TCGA-MP-A4T2-01 10 11060015 11060015 G A CELF2 5'UTR 0.45 TCGA-MP-A4T2-01 10 31810011 31810011 C - ZEB1 Frame_Shift_Del p.S584Ffs*7 0.18 TCGA-MP-A4T2-01 10 33190488 33190488 C T ITGB1 3'UTR 0.27 TCGA-MP-A4T2-01 10 43697256 43697256 C T RASGEF1A Silent p.E153E 0.26 TCGA-MP-A4T2-01 10 6067955 6067955 T A IL2RA Missense_Mutation p.H33L 0.43 tolerated(0.43) benign(0.186) TCGA-MP-A4T2-01 10 72307080 72307080 C T PALD1 Nonsense_Mutation p.Q714* 0.38 TCGA-MP-A4T2-01 10 90661432 90661432 A G STAMBPL1 5'UTR 0.07 TCGA-MP-A4T2-01 11 117969743 117969743 C T TMPRSS4 Silent p.F29F 0.05 TCGA-MP-A4T2-01 11 134126982 134126982 G A ACAD8 Missense_Mutation p.E71K 0.07 tolerated(0.67) benign(0.178) TCGA-MP-A4T2-01 11 27520276 27520276 G A LIN7C Nonsense_Mutation p.R172* 0.08 TCGA-MP-A4T2-01 11 5291163 5291163 G A HBE1 5'UTR 0.12 TCGA-MP-A4T2-01 11 5730866 5730866 A G TRIM22 Silent p.P495P 0.12 TCGA-MP-A4T2-01 11 60565933 60565933 C T MS4A10 Missense_Mutation p.P223L 0.13 tolerated(0.08) benign(0.38) TCGA-MP-A4T2-01 11 65004286 65004286 G T SLC22A20 RNA 0.16 TCGA-MP-A4T2-01 11 65269385 65269385 A G MALAT1 RNA 0.10 TCGA-MP-A4T2-01 11 9770693 9770693 G A SWAP70 Silent p.V538V 0.09 TCGA-MP-A4T2-01 11 99715611 99715611 T A CNTN5 Missense_Mutation p.V102E 0.25 tolerated(0.06) benign(0.428) TCGA-MP-A4T2-01 12 110581239 110581239 T A IFT81 Silent p.T278T 0.21 TCGA-MP-A4T2-01 12 133683172 133683172 C G ZNF140 Missense_Mutation p.L437V 0.05 tolerated(0.06) benign(0.001) TCGA-MP-A4T2-01 12 43846450 43846450 T C ADAMTS20 Silent p.R603R 0.16 TCGA-MP-A4T2-01 12 72680525 72680525 C T TRHDE Missense_Mutation p.P282S 0.12 deleterious(0) probably_damaging(1) TCGA-MP-A4T2-01 12 8196336 8196336 C T FOXJ2 Nonsense_Mutation p.R150* 0.35 TCGA-MP-A4T2-01 12 85638813 85638813 G T LRRIQ1 3'UTR 0.33 TCGA-MP-A4T2-01 12 97331052 97331052 G A NEDD1 Missense_Mutation p.G340E 0.09 tolerated(0.07) probably_damaging(0.929) TCGA-MP-A4T2-01 13 49281117 49281117 G A CYSLTR2 Missense_Mutation p.G55E 0.21 deleterious(0.03) possibly_damaging(0.873) TCGA-MP-A4T2-01 14 20586291 20586291 C G OR4K17 Missense_Mutation p.F242L 0.45 deleterious(0.01) possibly_damaging(0.615) TCGA-MP-A4T2-01 14 69814736 69814736 C T GALNT16 Intron 0.14 TCGA-MP-A4T2-01 15 72638941 72638941 G T HEXA Silent p.P419P 0.06 TCGA-MP-A4T2-01 16 20990681 20990681 A T DNAH3 Missense_Mutation p.L2683M 0.38 deleterious(0) probably_damaging(0.999) TCGA-MP-A4T2-01 16 58620552 58620552 T C CNOT1 Missense_Mutation p.I178M 0.14 tolerated(0.09) possibly_damaging(0.569) TCGA-MP-A4T2-01 16 66969599 66969599 C T CES2 Missense_Mutation p.L85F 0.05 tolerated(0.18) benign(0.043) TCGA-MP-A4T2-01 17 34849832 34849832 C G ZNHIT3 Missense_Mutation p.Q90E 0.09 tolerated(0.09) benign(0.009) TCGA-MP-A4T2-01 17 61907817 61907817 A T PSMC5 Nonsense_Mutation p.K170* 0.32 TCGA-MP-A4T2-01 17 66879937 66879937 G T ABCA8 Missense_Mutation p.F1194L 0.23 tolerated(0.1) benign(0.001) TCGA-MP-A4T2-01 17 7324312 7324312 G A SPEM1 Silent p.P106P 0.44 TCGA-MP-A4T2-01 17 7557386 7557386 C T ATP1B2 Silent p.I121I 0.04 TCGA-MP-A4T2-01 18 59954680 59954680 A G KIAA1468 Missense_Mutation p.Y1117C 0.06 deleterious(0) probably_damaging(0.996) TCGA-MP-A4T2-01 18 72346069 72346069 C G ZNF407 Missense_Mutation p.L1032V 0.07 deleterious(0) probably_damaging(0.999) TCGA-MP-A4T2-01 19 21350417 21350417 A G ZNF431 Silent p.Q89Q 0.21 TCGA-MP-A4T2-01 19 37368460 37368460 C A ZNF345 Nonsense_Mutation p.S243* 0.26 TCGA-MP-A4T2-01 19 38774438 38774438 G T SPINT2 Splice_Site p.X93_splice 0.30 TCGA-MP-A4T2-01 19 40149108 40149108 C A LGALS16 Missense_Mutation p.P34Q 0.25 deleterious(0) probably_damaging(1) TCGA-MP-A4T2-01 19 43523042 43523042 C T PSG11 Missense_Mutation p.E197K 0.08 tolerated(0.93) benign(0.003) TCGA-MP-A4T2-01 19 47422511 47422511 G A ARHGAP35 Silent p.K193K 0.16 TCGA-MP-A4T2-01 19 53217368 53217368 A T ZNF611 Silent p.A30A 0.04 TCGA-MP-A4T2-01 19 55451567 55451567 G A NLRP7 Missense_Mutation p.A207V 0.29 tolerated(0.14) possibly_damaging(0.784) TCGA-MP-A4T2-01 19 55805488 55805488 G A BRSK1 Missense_Mutation p.E188K 0.05 deleterious(0.01) possibly_damaging(0.621) TCGA-MP-A4T2-01 19 56701546 56701546 C G ZSCAN5B Missense_Mutation p.D380H 0.06 deleterious(0) possibly_damaging(0.764) TCGA-MP-A4T2-01 1 101185407 101185407 G A VCAM1 5'UTR 0.45 TCGA-MP-A4T2-01 1 116670829 116670829 G A MAB21L3 Missense_Mutation p.E242K 0.06 deleterious(0.01) benign(0.169) TCGA-MP-A4T2-01 1 12677258 12677258 C T DHRS3 Silent p.K32K 0.14 TCGA-MP-A4T2-01 1 149901551 149901551 C T MTMR11 Nonsense_Mutation p.W635* 0.04 TCGA-MP-A4T2-01 1 150923334 150923334 G T SETDB1 Missense_Mutation p.D661Y 0.15 deleterious(0) probably_damaging(1) TCGA-MP-A4T2-01 1 150923335 150923335 A T SETDB1 Missense_Mutation p.D661V 0.15 deleterious(0) probably_damaging(1) TCGA-MP-A4T2-01 1 156642197 156642197 C T NES Missense_Mutation p.E595K 0.15 tolerated(0.12) benign(0.039) TCGA-MP-A4T2-01 1 186045577 186045577 A G HMCN1 Missense_Mutation p.K2770E 0.15 probably_damaging(0.977) TCGA-MP-A4T2-01 1 19062344 19062344 C A PAX7 Silent p.A458A 0.46 TCGA-MP-A4T2-01 1 201030409 201030409 G A CACNA1S Silent p.L1081L 0.11 TCGA-MP-A4T2-01 1 236734889 236734889 C G HEATR1 Missense_Mutation p.D1269H 0.07 deleterious(0.01) benign(0.129) TCGA-MP-A4T2-01 1 33138267 33138267 A G RBBP4 Silent p.P356P 0.14 TCGA-MP-A4T2-01 1 54562017 54562017 C T TCEANC2 Silent p.L166L 0.06 TCGA-MP-A4T2-01 1 8421438 8421438 C T RERE Missense_Mutation p.S710N 0.17 probably_damaging(0.985) TCGA-MP-A4T2-01 20 34243194 34243194 C T RBM12 Missense_Mutation p.M17I 0.47 tolerated(0.16) unknown(0) TCGA-MP-A4T2-01 20 35176517 35176517 G T MYL9 Missense_Mutation p.M89I 0.17 deleterious(0.03) benign(0) TCGA-MP-A4T2-01 20 3761874 3761874 G A SPEF1 Missense_Mutation p.P21S 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-MP-A4T2-01 20 40050142 40050142 C T CHD6 Silent p.K1711K 0.05 TCGA-MP-A4T2-01 20 44691259 44691259 G A NCOA5 Nonsense_Mutation p.Q474* 0.04 TCGA-MP-A4T2-01 20 50782414 50782414 C G ZFP64 Missense_Mutation p.C146S 0.17 deleterious(0) probably_damaging(0.977) TCGA-MP-A4T2-01 20 61594048 61594048 C T SLC17A9 Silent p.S190S 0.09 TCGA-MP-A4T2-01 20 62737878 62737878 C A NPBWR2 Missense_Mutation p.A103S 0.12 deleterious(0) possibly_damaging(0.549) TCGA-MP-A4T2-01 21 32624298 32624298 G T TIAM1 Missense_Mutation p.L391M 0.07 deleterious(0) probably_damaging(1) TCGA-MP-A4T2-01 22 26888076 26888076 C T TFIP11 Missense_Mutation p.R806H 0.13 tolerated(0.13) benign(0.01) TCGA-MP-A4T2-01 22 40803490 40803490 A T SGSM3 Missense_Mutation p.H481L 0.49 deleterious(0.04) benign(0.028) TCGA-MP-A4T2-01 22 50664767 50664767 C G TUBGCP6 Missense_Mutation p.A548P 0.39 deleterious(0.01) possibly_damaging(0.806) TCGA-MP-A4T2-01 2 160673443 160673443 T A LY75-CD302 Silent p.A1418A 0.28 TCGA-MP-A4T2-01 2 185803762 185803762 A C ZNF804A 3'UTR 0.10 TCGA-MP-A4T2-01 2 190531771 190531771 G T ASNSD1 Nonsense_Mutation p.E305* 0.11 TCGA-MP-A4T2-01 2 55867787 55867787 T C PNPT1 Missense_Mutation p.H708R 0.31 tolerated(0.26) possibly_damaging(0.598) TCGA-MP-A4T2-01 2 66739372 66739372 C T MEIS1 Silent p.I278I 0.15 TCGA-MP-A4T2-01 3 114057956 114057956 C A ZBTB20 Missense_Mutation p.A708S 0.10 tolerated_low_confidence(0.28) benign(0.027) TCGA-MP-A4T2-01 3 128706617 128706617 A G KIAA1257 Missense_Mutation p.F170S 0.30 deleterious(0) probably_damaging(0.999) TCGA-MP-A4T2-01 3 196626846 196626846 A T SENP5 Missense_Mutation p.K557N 0.24 tolerated(0.07) possibly_damaging(0.776) TCGA-MP-A4T2-01 3 197241159 197241159 G C BDH1 Missense_Mutation p.L180V 0.24 deleterious(0) probably_damaging(0.978) TCGA-MP-A4T2-01 3 41977406 41977406 G C ULK4 Missense_Mutation p.Q89E 0.05 deleterious(0.01) possibly_damaging(0.521) TCGA-MP-A4T2-01 4 110788911 110788911 C G LRIT3 Missense_Mutation p.P235R 0.16 deleterious(0) probably_damaging(0.994) TCGA-MP-A4T2-01 4 184367364 184367364 C T CDKN2AIP Missense_Mutation p.S176L 0.09 deleterious_low_confidence(0.01) unknown(0) TCGA-MP-A4T2-01 4 4199064 4199064 G T OTOP1 Silent p.A499A 0.20 TCGA-MP-A4T2-01 5 1879834 1879834 C T IRX4 Missense_Mutation p.E174K 0.05 deleterious(0) probably_damaging(1) TCGA-MP-A4T2-01 5 39394427 39394427 A G DAB2 5'UTR 0.21 TCGA-MP-A4T2-01 5 43292578 43292578 C G HMGCS1 Missense_Mutation p.E491Q 0.07 tolerated_low_confidence(0.06) benign(0.012) TCGA-MP-A4T2-01 6 109983767 109983767 A G AK9 Missense_Mutation p.I144T 0.18 deleterious(0) possibly_damaging(0.685) TCGA-MP-A4T2-01 6 31118624 31118624 C G CCHCR1 Missense_Mutation p.D327H 0.12 deleterious(0.01) probably_damaging(0.937) TCGA-MP-A4T2-01 6 36043628 36043628 C T MAPK14 Silent p.L167L 0.16 TCGA-MP-A4T2-01 6 74228434 74228434 G A EEF1A1 Silent p.V253V 0.05 TCGA-MP-A4T2-01 7 111509639 111509639 C A DOCK4 Missense_Mutation p.E700D 0.09 tolerated(0.21) benign(0.007) TCGA-MP-A4T2-01 7 1527480 1527480 C A INTS1 Missense_Mutation p.G811V 0.13 tolerated(0.13) benign(0.019) TCGA-MP-A4T2-01 7 37903017 37903017 T C NME8 Missense_Mutation p.V136A 0.07 tolerated(0.28) benign(0.008) TCGA-MP-A4T2-01 7 54612423 54612423 G T VSTM2A Missense_Mutation p.W63L 0.17 deleterious(0) possibly_damaging(0.883) TCGA-MP-A4T2-01 7 72657809 72657809 T A GTF2IRD2P1 RNA 0.05 TCGA-MP-A4T2-01 8 101287227 101287227 A G RNF19A Silent p.T279T 0.14 TCGA-MP-A4T2-01 8 110587689 110587689 C G SYBU Missense_Mutation p.G480R 0.13 tolerated(0.13) benign(0.008) TCGA-MP-A4T2-01 8 22449117 22449117 G T PDLIM2 Missense_Mutation p.A523S 0.12 tolerated(0.27) benign(0.028) TCGA-MP-A4T2-01 8 30469903 30469903 G C GTF2E2 Silent p.L154L 0.06 TCGA-MP-A4T2-01 8 30948004 30948004 C T WRN Missense_Mutation p.S559L 0.06 deleterious(0) probably_damaging(1) TCGA-MP-A4T2-01 9 107651438 107651438 G C ABCA1 Missense_Mutation p.I35M 0.09 deleterious(0) benign(0.413) TCGA-MP-A4T2-01 9 132632069 132632069 G A USP20 Missense_Mutation p.G504E 0.26 deleterious(0) probably_damaging(0.981) TCGA-MP-A4T2-01 9 137777146 137777146 C G FCN2 Missense_Mutation p.I121M 0.11 deleterious(0) probably_damaging(0.988) TCGA-MP-A4T2-01 9 139927432 139927432 C T C9orf139 5'UTR 0.09 TCGA-MP-A4T2-01 9 21227650 21227650 G A IFNA17 Missense_Mutation p.L175F 0.42 tolerated(1) benign(0.006) TCGA-MP-A4T2-01 9 90321635 90321635 A C DAPK1 Missense_Mutation p.S1217R 0.11 tolerated(0.07) benign(0.342) TCGA-MP-A4T2-01 X 3235197 3235197 C T MXRA5 Nonsense_Mutation p.W2175* 0.50 TCGA-MP-A4T2-01 Y 16734057 16734057 A T NLGN4Y Missense_Mutation p.M20L 0.67 tolerated_low_confidence(0.78) benign(0) TCGA-MP-A4T4-01 10 102250470 102250470 T C SEC31B Silent p.V881V 0.16 TCGA-MP-A4T4-01 10 116919851 116919851 C - ATRNL1 Frame_Shift_Del p.P294Qfs*10 0.10 TCGA-MP-A4T4-01 10 15254858 15254858 A G FAM171A1 3'UTR 0.09 TCGA-MP-A4T4-01 10 18276506 18276506 C A SLC39A12 Missense_Mutation p.L399I 0.14 deleterious(0.02) possibly_damaging(0.558) TCGA-MP-A4T4-01 10 21959512 21959512 T C MLLT10 Silent p.T310T 0.10 TCGA-MP-A4T4-01 10 25887191 25887191 C A GPR158 Nonsense_Mutation p.S879* 0.16 TCGA-MP-A4T4-01 10 3155606 3155606 G C PFKP Missense_Mutation p.A423P 0.16 tolerated(0.19) benign(0.159) TCGA-MP-A4T4-01 10 38344077 38344077 C T ZNF33A Missense_Mutation p.S342L 0.08 tolerated(0.24) benign(0.026) TCGA-MP-A4T4-01 10 48414138 48414138 C T GDF2 Missense_Mutation p.V244I 0.19 tolerated(0.17) probably_damaging(0.942) TCGA-MP-A4T4-01 10 55566707 55566707 G T PCDH15 Missense_Mutation p.L1560I 0.19 tolerated_low_confidence(0.39) benign(0) TCGA-MP-A4T4-01 10 55839101 55839101 C A PCDH15 Missense_Mutation p.R694M 0.19 deleterious(0.01) probably_damaging(0.976) TCGA-MP-A4T4-01 10 69752385 69752385 A T HERC4 Missense_Mutation p.F375Y 0.22 deleterious(0.02) benign(0.221) TCGA-MP-A4T4-01 10 69881414 69881414 C T MYPN Silent p.D73D 0.21 TCGA-MP-A4T4-01 10 70333702 70333702 C A TET1 Missense_Mutation p.A536D 0.18 tolerated(0.09) possibly_damaging(0.634) TCGA-MP-A4T4-01 10 70644800 70644800 G - STOX1 Frame_Shift_Del p.G417Vfs*55 0.19 TCGA-MP-A4T4-01 10 72536994 72536994 C A TBATA Missense_Mutation p.R202L 0.10 deleterious(0.04) benign(0.275) TCGA-MP-A4T4-01 10 73560449 73560449 G T CDH23 Silent p.L233L 0.09 TCGA-MP-A4T4-01 10 98307736 98307736 T C TM9SF3 Missense_Mutation p.M324V 0.18 tolerated(0.31) benign(0.003) TCGA-MP-A4T4-01 11 100169967 100169967 G T CNTN5 Missense_Mutation p.G820V 0.10 tolerated(0.22) probably_damaging(1) TCGA-MP-A4T4-01 11 100170098 100170098 C A CNTN5 Missense_Mutation p.Q864K 0.07 tolerated(0.17) benign(0.001) TCGA-MP-A4T4-01 11 1017653 1017653 G T MUC6 Silent p.P1716P 0.05 TCGA-MP-A4T4-01 11 105623807 105623807 C T GRIA4 Silent p.S116S 0.15 TCGA-MP-A4T4-01 11 108389099 108389099 T A EXPH5 Missense_Mutation p.Q165L 0.09 deleterious(0.04) possibly_damaging(0.743) TCGA-MP-A4T4-01 11 118375125 118375125 A T KMT2A Missense_Mutation p.N2840Y 0.10 probably_damaging(0.998) TCGA-MP-A4T4-01 11 124252969 124252969 T C OR8B2 Missense_Mutation p.I91V 0.09 tolerated_low_confidence(0.23) benign(0) TCGA-MP-A4T4-01 11 18317640 18317640 C G HPS5 Missense_Mutation p.E514Q 0.12 deleterious_low_confidence(0.03) benign(0.133) TCGA-MP-A4T4-01 11 24998157 24998157 G T LUZP2 Silent p.L181L 0.09 TCGA-MP-A4T4-01 11 27371746 27371746 T A CCDC34 Intron 0.14 TCGA-MP-A4T4-01 11 43284654 43284654 T A HNRNPKP3 RNA 0.20 TCGA-MP-A4T4-01 11 45924236 45924236 G T MAPK8IP1 Silent p.R306R 0.10 TCGA-MP-A4T4-01 11 4936428 4936428 G T OR51G2 Missense_Mutation p.R156S 0.12 deleterious(0) probably_damaging(0.937) TCGA-MP-A4T4-01 11 56237319 56237319 T A OR5M3 Missense_Mutation p.I219F 0.12 deleterious(0) probably_damaging(0.995) TCGA-MP-A4T4-01 11 5757848 5757848 C A OR56B1 Missense_Mutation p.H34Q 0.12 tolerated(0.1) possibly_damaging(0.835) TCGA-MP-A4T4-01 11 60105415 60105415 C A MS4A6E Missense_Mutation p.L117M 0.12 deleterious(0.01) probably_damaging(1) TCGA-MP-A4T4-01 11 6260715 6260715 G T CNGA4 Missense_Mutation p.R55I 0.12 deleterious(0) probably_damaging(0.949) TCGA-MP-A4T4-01 11 6261311 6261311 G T CNGA4 Missense_Mutation p.G96V 0.16 deleterious(0) probably_damaging(1) TCGA-MP-A4T4-01 11 64418096 64418096 A T NRXN2 Missense_Mutation p.V978E 0.15 deleterious(0) probably_damaging(0.999) TCGA-MP-A4T4-01 11 65780884 65780884 G A CST6 3'UTR 0.08 TCGA-MP-A4T4-01 11 70279240 70279240 A T CTTN Nonsense_Mutation p.R397* 0.06 TCGA-MP-A4T4-01 11 78369407 78369407 T C TENM4 Missense_Mutation p.Q2669R 0.10 tolerated(0.13) benign(0.022) TCGA-MP-A4T4-01 11 7982713 7982713 G A NLRP10 Missense_Mutation p.S149F 0.12 deleterious(0.05) benign(0.015) TCGA-MP-A4T4-01 11 86086236 86086236 G T CCDC81 Missense_Mutation p.D11Y 0.05 deleterious(0) probably_damaging(0.94) TCGA-MP-A4T4-01 11 89133529 89133529 C A NOX4 Nonsense_Mutation p.G289* 0.10 TCGA-MP-A4T4-01 11 94731561 94731561 G T KDM4D Missense_Mutation p.R342L 0.18 tolerated(0.53) benign(0.023) TCGA-MP-A4T4-01 12 100751157 100751157 C A SLC17A8 5'UTR 0.16 TCGA-MP-A4T4-01 12 102025835 102025835 G T MYBPC1 Missense_Mutation p.D134Y 0.11 tolerated(0.1) possibly_damaging(0.667) TCGA-MP-A4T4-01 12 109613747 109613747 G A ACACB Missense_Mutation p.E410K 0.09 tolerated(0.14) benign(0.003) TCGA-MP-A4T4-01 12 110933846 110933846 C T VPS29 Missense_Mutation p.V60I 0.06 tolerated(0.13) benign(0.057) TCGA-MP-A4T4-01 12 11546459 11546459 G T PRB2 Missense_Mutation p.P185T 0.04 tolerated(0.09) unknown(0) TCGA-MP-A4T4-01 12 130927174 130927174 C T RIMBP2 Silent p.V224V 0.07 TCGA-MP-A4T4-01 12 132562035 132562035 G T EP400 Silent p.V3063V 0.08 TCGA-MP-A4T4-01 12 133198153 133198153 C T P2RX2 Silent p.S363S 0.06 TCGA-MP-A4T4-01 12 1943698 1943698 G T LRTM2 Missense_Mutation p.M308I 0.10 tolerated(0.86) benign(0) TCGA-MP-A4T4-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.19 deleterious(0) possibly_damaging(0.479) TCGA-MP-A4T4-01 12 27568866 27568866 G C ARNTL2 Missense_Mutation p.V551L 0.07 tolerated(0.63) benign(0.003) TCGA-MP-A4T4-01 12 2927335 2927335 G T ITFG2 Missense_Mutation p.V100L 0.10 tolerated(0.38) benign(0.002) TCGA-MP-A4T4-01 12 33592414 33592414 T C SYT10 Missense_Mutation p.K15R 0.09 tolerated(0.45) benign(0.001) TCGA-MP-A4T4-01 12 39752135 39752135 C G KIF21A Missense_Mutation p.D354H 0.09 deleterious(0.01) probably_damaging(1) TCGA-MP-A4T4-01 12 4479788 4479788 G A FGF23 Silent p.S159S 0.17 TCGA-MP-A4T4-01 12 49729948 49729948 C A C1QL4 Missense_Mutation p.G105C 0.60 tolerated(0.17) benign(0.392) TCGA-MP-A4T4-01 12 53579215 53579215 T A ZNF740 Missense_Mutation p.D68E 0.08 tolerated(0.36) benign(0.417) TCGA-MP-A4T4-01 12 65141690 65141690 T A GNS Silent p.P87P 0.08 TCGA-MP-A4T4-01 12 6924043 6924043 G T CD4 Missense_Mutation p.Q164H 0.07 tolerated(0.11) benign(0.007) TCGA-MP-A4T4-01 12 78401105 78401105 C A NAV3 Missense_Mutation p.S596Y 0.22 tolerated(0.07) benign(0.346) TCGA-MP-A4T4-01 12 78553040 78553040 A G NAV3 Missense_Mutation p.S1615G 0.19 deleterious(0.01) possibly_damaging(0.622) TCGA-MP-A4T4-01 12 80661056 80661056 G T OTOGL Missense_Mutation p.R796M 0.29 tolerated(0.36) benign(0.32) TCGA-MP-A4T4-01 12 81110984 81110984 G T MYF5 Missense_Mutation p.G48C 0.13 tolerated(0.13) benign(0.038) TCGA-MP-A4T4-01 12 86373367 86373367 A G MGAT4C Silent p.F379F 0.17 TCGA-MP-A4T4-01 12 86377366 86377366 G C MGAT4C Missense_Mutation p.S77C 0.08 deleterious(0.05) probably_damaging(0.95) TCGA-MP-A4T4-01 12 94976162 94976163 - T TMCC3 Frame_Shift_Ins p.V78Gfs*8 0.11 TCGA-MP-A4T4-01 12 968494 968494 G T WNK1 Missense_Mutation p.G495V 0.12 deleterious(0) unknown(0) TCGA-MP-A4T4-01 12 988806 988806 C T WNK1 Missense_Mutation p.S814L 0.05 deleterious(0) benign(0.042) TCGA-MP-A4T4-01 13 102366841 102366841 G - ITGBL1 Frame_Shift_Del p.E446Sfs*79 0.14 TCGA-MP-A4T4-01 13 114287474 114287474 A G TFDP1 Silent p.L116L 0.14 TCGA-MP-A4T4-01 13 29600401 29600401 C A MTUS2 Silent p.T532T 0.13 TCGA-MP-A4T4-01 13 53250391 53250391 G A SUGT1 Silent p.E250E 0.20 TCGA-MP-A4T4-01 14 101404533 101404533 G A SNORD113-5 RNA 0.29 TCGA-MP-A4T4-01 14 105412520 105412520 G A AHNAK2 Silent p.L3090L 0.04 TCGA-MP-A4T4-01 14 105612832 105612832 C T JAG2 Missense_Mutation p.G867R 0.20 deleterious(0.02) benign(0.444) TCGA-MP-A4T4-01 14 106518705 106518705 C G IGHV3-7 Splice_Site p.X16_splice 0.07 TCGA-MP-A4T4-01 14 20019971 20019971 C G POTEM Missense_Mutation p.G84R 0.04 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-MP-A4T4-01 14 21883951 21883951 T A CHD8 Missense_Mutation p.E611V 0.18 tolerated(0.07) benign(0.027) TCGA-MP-A4T4-01 14 21971952 21971952 G A METTL3 Missense_Mutation p.S58F 0.06 deleterious(0.05) benign(0.011) TCGA-MP-A4T4-01 14 24788553 24788553 A T ADCY4 Silent p.S941S 0.14 TCGA-MP-A4T4-01 14 24839564 24839564 C A NFATC4 Silent p.A383A 0.17 TCGA-MP-A4T4-01 14 34266696 34266696 C T NPAS3 Silent p.I445I 0.11 TCGA-MP-A4T4-01 14 34269550 34269550 C A NPAS3 Silent p.P679P 0.13 TCGA-MP-A4T4-01 14 42356284 42356284 G T LRFN5 Silent p.L152L 0.17 TCGA-MP-A4T4-01 14 51443962 51443962 C A TRIM9 3'UTR 0.25 TCGA-MP-A4T4-01 14 74976541 74976541 C G LTBP2 Missense_Mutation p.R1058P 0.21 tolerated(0.29) possibly_damaging(0.904) TCGA-MP-A4T4-01 14 89061257 89061257 G T ZC3H14 Intron 0.15 TCGA-MP-A4T4-01 14 95108172 95108172 G T SERPINA13P RNA 0.23 TCGA-MP-A4T4-01 14 95918632 95918632 A G SYNE3 Missense_Mutation p.L409P 0.26 tolerated(0.32) benign(0.003) TCGA-MP-A4T4-01 15 100821582 100821582 C A ADAMTS17 Missense_Mutation p.R214M 0.22 deleterious(0.01) benign(0.155) TCGA-MP-A4T4-01 15 101031075 101031075 G A CERS3 Missense_Mutation p.P79S 0.14 deleterious(0.03) probably_damaging(0.92) TCGA-MP-A4T4-01 15 101555608 101555608 G T LRRK1 Splice_Site p.X537_splice 0.14 TCGA-MP-A4T4-01 15 23811596 23811596 G T MKRN3 Missense_Mutation p.A223S 0.12 tolerated(0.05) benign(0.265) TCGA-MP-A4T4-01 15 40093282 40093282 C G GPR176 3'UTR 0.14 TCGA-MP-A4T4-01 15 48064097 48064097 C A SEMA6D 3'UTR 0.14 TCGA-MP-A4T4-01 15 49148230 49148230 C T SHC4 Missense_Mutation p.V388I 0.16 tolerated(0.33) benign(0.004) TCGA-MP-A4T4-01 15 81592192 81592192 G T IL16 Missense_Mutation p.R842I 0.10 deleterious(0.01) probably_damaging(0.993) TCGA-MP-A4T4-01 15 89386758 89386758 C T ACAN Silent p.P310P 0.26 TCGA-MP-A4T4-01 15 89401655 89401655 C A ACAN Missense_Mutation p.Q1947K 0.10 tolerated(0.14) probably_damaging(0.93) TCGA-MP-A4T4-01 15 90992861 90992861 A G IQGAP1 Missense_Mutation p.Q383R 0.17 tolerated(0.24) benign(0.017) TCGA-MP-A4T4-01 15 94841936 94841936 G T MCTP2 Missense_Mutation p.G148W 0.14 deleterious(0.01) benign(0.325) TCGA-MP-A4T4-01 16 112552 112552 G A RHBDF1 Missense_Mutation p.R313C 0.10 deleterious(0.02) possibly_damaging(0.841) TCGA-MP-A4T4-01 16 19127438 19127438 C T ITPRIPL2 3'UTR 0.14 TCGA-MP-A4T4-01 16 20975863 20975863 G T DNAH3 Missense_Mutation p.L3115M 0.16 tolerated(0.07) possibly_damaging(0.903) TCGA-MP-A4T4-01 16 28877882 28877882 G T SH2B1 Missense_Mutation p.R156L 0.06 deleterious(0) possibly_damaging(0.676) TCGA-MP-A4T4-01 16 31409138 31409138 G T ITGAD Missense_Mutation p.R112I 0.15 deleterious(0) possibly_damaging(0.794) TCGA-MP-A4T4-01 16 4164240 4164240 C A ADCY9 Missense_Mutation p.G402C 0.10 deleterious(0) probably_damaging(1) TCGA-MP-A4T4-01 16 50744526 50744526 G T NOD2 Missense_Mutation p.R235L 0.11 tolerated(0.09) benign(0.082) TCGA-MP-A4T4-01 16 55364267 55364267 C T IRX6 3'UTR 0.11 TCGA-MP-A4T4-01 16 57003425 57003425 G T CETP Missense_Mutation p.A121S 0.05 deleterious(0.03) benign(0.369) TCGA-MP-A4T4-01 16 71220769 71220770 - A HYDIN Frame_Shift_Ins p.M10Ifs*83 0.09 TCGA-MP-A4T4-01 16 7568266 7568266 G A RBFOX1 Missense_Mutation p.A69T 0.20 tolerated(1) benign(0.048) TCGA-MP-A4T4-01 16 89703638 89703638 G T DPEP1 Silent p.L206L 0.08 TCGA-MP-A4T4-01 16 9857945 9857945 C T GRIN2A Silent p.Q1152Q 0.08 TCGA-MP-A4T4-01 17 10296273 10296273 C G MYH8 Missense_Mutation p.A1780P 0.10 deleterious(0.01) benign(0.378) TCGA-MP-A4T4-01 17 10346797 10346797 G T MYH4 Missense_Mutation p.H1905Q 0.10 deleterious(0.03) probably_damaging(1) TCGA-MP-A4T4-01 17 11515212 11515212 C G DNAH9 Intron 0.21 TCGA-MP-A4T4-01 17 11543666 11543666 G T DNAH9 Missense_Mutation p.Q622H 0.10 benign(0.049) TCGA-MP-A4T4-01 17 16526281 16526281 T C ZNF624 Missense_Mutation p.Y640C 0.18 deleterious(0) probably_damaging(0.961) TCGA-MP-A4T4-01 17 18023144 18023144 G T MYO15A Missense_Mutation p.D344Y 0.14 possibly_damaging(0.861) TCGA-MP-A4T4-01 17 25975974 25975974 G A LGALS9 Missense_Mutation p.G345E 0.07 tolerated(0.52) benign(0.283) TCGA-MP-A4T4-01 17 33313130 33313130 G T LIG3 Missense_Mutation p.R224L 0.09 tolerated(0.12) benign(0.021) TCGA-MP-A4T4-01 17 3583022 3583022 G A P2RX5 Missense_Mutation p.S374F 0.11 deleterious(0.03) benign(0.165) TCGA-MP-A4T4-01 17 38562659 38562659 C A TOP2A Nonsense_Mutation p.E644* 0.09 TCGA-MP-A4T4-01 17 39183319 39183319 C T KRTAP1-5 Missense_Mutation p.C30Y 0.14 deleterious(0) unknown(0) TCGA-MP-A4T4-01 17 42636413 42636413 G A FZD2 Missense_Mutation p.E453K 0.07 deleterious(0.01) benign(0.343) TCGA-MP-A4T4-01 17 44128063 44128063 C A KANSL1 Missense_Mutation p.R619L 0.22 deleterious(0) benign(0.177) TCGA-MP-A4T4-01 17 51902396 51902396 G T KIF2B Missense_Mutation p.V668L 0.10 tolerated_low_confidence(0.07) benign(0.004) TCGA-MP-A4T4-01 17 56399715 56399715 C A BZRAP1 Missense_Mutation p.R459L 0.12 tolerated(0.52) benign(0.021) TCGA-MP-A4T4-01 17 57842496 57842496 G T VMP1 Missense_Mutation p.M193I 0.09 deleterious(0.01) possibly_damaging(0.748) TCGA-MP-A4T4-01 17 65924504 65924504 G A BPTF Missense_Mutation p.A1929T 0.10 benign(0.12) TCGA-MP-A4T4-01 17 66274420 66274420 C T SLC16A6 Silent p.V14V 0.23 TCGA-MP-A4T4-01 17 67136851 67136851 T A ABCA6 5'UTR 0.12 TCGA-MP-A4T4-01 17 67250456 67250456 C A ABCA5 Missense_Mutation p.R1415L 0.06 deleterious(0.02) possibly_damaging(0.827) TCGA-MP-A4T4-01 17 72950295 72950295 C G HID1 Missense_Mutation p.G601A 0.23 tolerated(0.4) benign(0.081) TCGA-MP-A4T4-01 17 7320633 7320633 G T NLGN2 Nonsense_Mutation p.E675* 0.26 TCGA-MP-A4T4-01 17 73492399 73492399 C T KIAA0195 Silent p.S1030S 0.26 TCGA-MP-A4T4-01 17 7578457 7578457 C G TP53 Missense_Mutation p.R158P 0.06 deleterious(0) probably_damaging(0.997) TCGA-MP-A4T4-01 17 77043765 77043765 C A C1QTNF1 Silent p.A147A 0.30 TCGA-MP-A4T4-01 17 80319864 80319864 C A TEX19 5'UTR 0.20 TCGA-MP-A4T4-01 18 14542927 14542927 C T POTEC Silent p.R73R 0.05 TCGA-MP-A4T4-01 18 14851683 14851683 T A ANKRD30B Missense_Mutation p.M1128K 0.08 tolerated(1) benign(0.346) TCGA-MP-A4T4-01 18 28909927 28909927 G T DSG1 Missense_Mutation p.D149Y 0.06 deleterious(0) probably_damaging(0.999) TCGA-MP-A4T4-01 18 28935062 28935062 C A DSG1 Missense_Mutation p.T968N 0.10 tolerated(0.16) benign(0.008) TCGA-MP-A4T4-01 18 29340762 29340762 C A SLC25A52 5'UTR 0.13 TCGA-MP-A4T4-01 18 31325402 31325402 G C ASXL3 Missense_Mutation p.G1864R 0.07 possibly_damaging(0.636) TCGA-MP-A4T4-01 18 43405636 43405636 C A SIGLEC15 5'UTR 0.14 TCGA-MP-A4T4-01 18 77107811 77107811 G C ATP9B Silent p.T908T 0.19 TCGA-MP-A4T4-01 18 8379322 8379322 A G PTPRM Missense_Mutation p.N1257S 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-MP-A4T4-01 19 19654200 19654200 G T CILP2 Missense_Mutation p.R374L 0.21 tolerated(0.7) benign(0.003) TCGA-MP-A4T4-01 19 33078159 33078159 T C PDCD5 Missense_Mutation p.F111L 0.14 deleterious(0.03) possibly_damaging(0.51) TCGA-MP-A4T4-01 19 35616112 35616112 G T LGI4 Silent p.I533I 0.08 TCGA-MP-A4T4-01 19 37879787 37879787 G A ZNF527 Missense_Mutation p.C279Y 0.12 deleterious(0.03) benign(0.016) TCGA-MP-A4T4-01 19 38077359 38077359 C A ZNF571 Intron 0.33 TCGA-MP-A4T4-01 19 38858213 38858213 G T CATSPERG Splice_Site p.X945_splice 0.10 TCGA-MP-A4T4-01 19 42585432 42585432 G A ZNF574 Missense_Mutation p.V892I 0.07 tolerated(0.3) benign(0.417) TCGA-MP-A4T4-01 19 43358247 43358247 T C PSG10P RNA 0.23 TCGA-MP-A4T4-01 19 43773566 43773566 G T PSG9 Silent p.A6A 0.14 TCGA-MP-A4T4-01 19 43773577 43773577 G T PSG9 Missense_Mutation p.P3T 0.13 deleterious(0.04) benign(0.018) TCGA-MP-A4T4-01 19 44223558 44223559 - A IRGC Frame_Shift_Ins p.G284Rfs*8 0.24 TCGA-MP-A4T4-01 19 44681232 44681232 G A ZNF226 Missense_Mutation p.C606Y 0.31 tolerated(0.1) probably_damaging(0.981) TCGA-MP-A4T4-01 19 44792546 44792546 T C ZNF235 Missense_Mutation p.T348A 0.39 deleterious(0.04) benign(0.044) TCGA-MP-A4T4-01 19 45682624 45682624 G T BLOC1S3 Nonsense_Mutation p.E24* 0.35 TCGA-MP-A4T4-01 19 49259627 49259627 G A FGF21 Missense_Mutation p.R45Q 0.22 deleterious(0) probably_damaging(1) TCGA-MP-A4T4-01 19 52919085 52919085 G T ZNF528 Missense_Mutation p.C327F 0.30 deleterious(0) probably_damaging(1) TCGA-MP-A4T4-01 19 54080096 54080096 C T ZNF331 Silent p.R94R 0.26 TCGA-MP-A4T4-01 19 54377253 54377253 G T MYADM Missense_Mutation p.W157L 0.24 tolerated(0.12) benign(0.168) TCGA-MP-A4T4-01 19 54515470 54515470 A G CACNG6 3'UTR 0.17 TCGA-MP-A4T4-01 19 54600406 54600406 G T OSCAR Missense_Mutation p.P43Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-MP-A4T4-01 19 55098805 55098805 G T LILRA2 Missense_Mutation p.G482W 0.20 deleterious(0.02) benign(0.345) TCGA-MP-A4T4-01 19 55286745 55286745 C A KIR2DL1 Missense_Mutation p.H167N 0.24 tolerated(0.26) possibly_damaging(0.649) TCGA-MP-A4T4-01 19 55399671 55399671 G T FCAR Intron 0.32 TCGA-MP-A4T4-01 19 55995009 55995009 G T ZNF628 Missense_Mutation p.G817W 0.23 deleterious(0) unknown(0) TCGA-MP-A4T4-01 19 56423247 56423247 G C NLRP13 Missense_Mutation p.Q646E 0.23 deleterious(0) benign(0.138) TCGA-MP-A4T4-01 19 58198441 58198441 T G ZNF551 Silent p.L266L 0.27 TCGA-MP-A4T4-01 19 8808110 8808110 G C ACTL9 Silent p.G314G 0.12 TCGA-MP-A4T4-01 19 9084564 9084564 T A MUC16 Silent p.T2417T 0.24 TCGA-MP-A4T4-01 1 103354144 103354144 G T COL11A1 Missense_Mutation p.P1533T 0.17 unknown(0) TCGA-MP-A4T4-01 1 103379962 103379962 C A COL11A1 Splice_Site p.X1309_splice 0.08 TCGA-MP-A4T4-01 1 10702986 10702986 C A CASZ1 Missense_Mutation p.M1364I 0.17 tolerated_low_confidence(0.43) benign(0.003) TCGA-MP-A4T4-01 1 109479896 109479896 C T CLCC1 Missense_Mutation p.A396T 0.06 tolerated(0.09) benign(0.153) TCGA-MP-A4T4-01 1 11103021 11103021 A T MASP2 Missense_Mutation p.I267N 0.10 deleterious(0) probably_damaging(0.999) TCGA-MP-A4T4-01 1 113266586 113266586 C A FAM19A3 Missense_Mutation p.H95Q 0.12 tolerated(0.52) benign(0.005) TCGA-MP-A4T4-01 1 115222973 115222973 C A AMPD1 Missense_Mutation p.S258I 0.07 tolerated(0.1) benign(0.035) TCGA-MP-A4T4-01 1 149755764 149755764 G C FCGR1A Missense_Mutation p.Q86H 0.15 deleterious(0.01) probably_damaging(0.977) TCGA-MP-A4T4-01 1 149858043 149858043 G - HIST2H2BE Frame_Shift_Del p.H50Tfs*14 0.13 TCGA-MP-A4T4-01 1 152383002 152383002 A G CRNN Missense_Mutation p.S186P 0.09 tolerated(0.27) benign(0.127) TCGA-MP-A4T4-01 1 156262718 156262718 A G C1orf85 3'UTR 0.23 TCGA-MP-A4T4-01 1 156642667 156642667 G T NES Missense_Mutation p.A438D 0.22 tolerated(0.08) possibly_damaging(0.793) TCGA-MP-A4T4-01 1 157555993 157555993 G C FCRL4 Missense_Mutation p.P367R 0.24 tolerated(0.19) possibly_damaging(0.564) TCGA-MP-A4T4-01 1 158581060 158581060 G T SPTA1 Silent p.G2418G 0.20 TCGA-MP-A4T4-01 1 161762105 161762105 G T ATF6 Missense_Mutation p.A226S 0.29 deleterious(0.01) benign(0.437) TCGA-MP-A4T4-01 1 172007534 172007534 C A DNM3 Missense_Mutation p.H309N 0.14 deleterious(0.01) benign(0.006) TCGA-MP-A4T4-01 1 181754455 181754455 C A CACNA1E Silent p.A1860A 0.32 TCGA-MP-A4T4-01 1 204400812 204400812 G A PIK3C2B Missense_Mutation p.S1422F 0.16 tolerated(0.3) possibly_damaging(0.789) TCGA-MP-A4T4-01 1 204408126 204408126 G A PIK3C2B Silent p.F1151F 0.23 TCGA-MP-A4T4-01 1 21191717 21191717 C A EIF4G3 Silent p.V837V 0.15 TCGA-MP-A4T4-01 1 227083161 227083161 A C PSEN2 Missense_Mutation p.K410Q 0.24 deleterious(0.02) probably_damaging(0.987) TCGA-MP-A4T4-01 1 228482481 228482481 C A OBSCN Missense_Mutation p.A4228D 0.08 probably_damaging(0.998) TCGA-MP-A4T4-01 1 237919648 237919648 G T RYR2 Missense_Mutation p.A3736S 0.22 possibly_damaging(0.893) TCGA-MP-A4T4-01 1 238090695 238090695 G T RP11-193H5.1 RNA 0.33 TCGA-MP-A4T4-01 1 243385065 243385065 C T CEP170 Silent p.T52T 0.37 TCGA-MP-A4T4-01 1 247921446 247921446 C G OR1C1 Missense_Mutation p.G88A 0.10 tolerated(0.06) benign(0.053) TCGA-MP-A4T4-01 1 248309285 248309285 C A OR2M5 Missense_Mutation p.T279N 0.08 deleterious(0.01) probably_damaging(0.958) TCGA-MP-A4T4-01 1 248309286 248309286 C A OR2M5 Silent p.T279T 0.08 TCGA-MP-A4T4-01 1 27226753 27226753 C G GPATCH3 Missense_Mutation p.A61P 0.13 tolerated(0.13) benign(0.005) TCGA-MP-A4T4-01 1 39845039 39845039 G A MACF1 Missense_Mutation p.E2419K 0.08 benign(0.025) TCGA-MP-A4T4-01 1 39893285 39893285 A G MACF1 Missense_Mutation p.K3430R 0.06 probably_damaging(0.999) TCGA-MP-A4T4-01 1 40124835 40124835 G T NT5C1A Silent p.P355P 0.14 TCGA-MP-A4T4-01 1 6203990 6203990 C A CHD5 Nonsense_Mutation p.E646* 0.21 TCGA-MP-A4T4-01 1 75677224 75677224 C A SLC44A5 Missense_Mutation p.G659V 0.07 deleterious(0) probably_damaging(0.989) TCGA-MP-A4T4-01 1 77510154 77510154 A T ST6GALNAC5 Missense_Mutation p.Y176F 0.18 probably_damaging(0.952) TCGA-MP-A4T4-01 1 99772153 99772153 C A LPPR4 Missense_Mutation p.P627T 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-MP-A4T4-01 20 2411632 2411632 G T TGM6 Missense_Mutation p.M642I 0.12 tolerated(0.21) benign(0.002) TCGA-MP-A4T4-01 20 30522575 30522575 G T TTLL9 Missense_Mutation p.R296S 0.12 tolerated(0.78) benign(0.003) TCGA-MP-A4T4-01 20 3127521 3127521 C A FASTKD5 Silent p.V732V 0.12 TCGA-MP-A4T4-01 20 34770228 34770228 C T EPB41L1 Silent p.F175F 0.13 TCGA-MP-A4T4-01 20 43929751 43929751 T A MATN4 Missense_Mutation p.S294C 0.11 possibly_damaging(0.754) TCGA-MP-A4T4-01 20 61430922 61430922 G T MRGBP Missense_Mutation p.R181L 0.17 deleterious(0) probably_damaging(0.972) TCGA-MP-A4T4-01 20 62172643 62172643 C T SRMS Missense_Mutation p.E396K 0.10 deleterious(0) probably_damaging(1) TCGA-MP-A4T4-01 20 62836964 62836964 C T MYT1 Silent p.L70L 0.11 TCGA-MP-A4T4-01 20 896564 896564 C G ANGPT4 Silent p.T98T 0.14 TCGA-MP-A4T4-01 21 22710824 22710824 G T NCAM2 Silent p.V338V 0.20 TCGA-MP-A4T4-01 21 31869192 31869192 G C KRTAP19-4 Missense_Mutation p.F79L 0.06 deleterious_low_confidence(0) unknown(0) TCGA-MP-A4T4-01 21 34132240 34132240 G A PAXBP1 Silent p.Y347Y 0.09 TCGA-MP-A4T4-01 21 43704715 43704715 A T ABCG1 Missense_Mutation p.K260N 0.20 deleterious(0.01) benign(0.079) TCGA-MP-A4T4-01 21 44524456 44524456 G A U2AF1 Missense_Mutation p.S34F 0.06 deleterious(0) possibly_damaging(0.835) TCGA-MP-A4T4-01 21 46057730 46057730 C - KRTAP10-10 Frame_Shift_Del p.Q133Sfs*134 0.10 TCGA-MP-A4T4-01 21 47831287 47831287 A T PCNT Missense_Mutation p.Q1767L 0.19 benign(0.403) TCGA-MP-A4T4-01 22 22890790 22890790 G T PRAME Missense_Mutation p.T410N 0.12 deleterious(0.03) probably_damaging(0.936) TCGA-MP-A4T4-01 22 29885855 29885855 A G NEFH Silent p.E742E 0.12 TCGA-MP-A4T4-01 22 30741167 30741167 C A SF3A1 Missense_Mutation p.V136L 0.10 tolerated(0.15) possibly_damaging(0.785) TCGA-MP-A4T4-01 22 37602592 37602592 G T SSTR3 Nonsense_Mutation p.Y417* 0.14 TCGA-MP-A4T4-01 22 38891937 38891937 T A DDX17 Silent p.L248L 0.10 TCGA-MP-A4T4-01 22 39817937 39817937 G A TAB1 Silent p.K294K 0.17 TCGA-MP-A4T4-01 22 40662138 40662138 A T TNRC6B Missense_Mutation p.D635V 0.12 deleterious(0) probably_damaging(0.939) TCGA-MP-A4T4-01 22 45309769 45309769 G T PHF21B Missense_Mutation p.P255Q 0.20 deleterious(0.01) probably_damaging(0.917) TCGA-MP-A4T4-01 2 113251938 113251938 C T TTL Missense_Mutation p.S152L 0.14 deleterious(0) probably_damaging(0.93) TCGA-MP-A4T4-01 2 141116459 141116459 G T LRP1B Missense_Mutation p.L3730I 0.12 benign(0.364) TCGA-MP-A4T4-01 2 152548389 152548389 G A NEB Nonsense_Mutation p.Q734* 0.22 TCGA-MP-A4T4-01 2 168103980 168103980 A G XIRP2 Silent p.V2026V 0.12 TCGA-MP-A4T4-01 2 189871694 189871694 C A COL3A1 Missense_Mutation p.P1078H 0.26 probably_damaging(0.999) TCGA-MP-A4T4-01 2 204591549 204591549 G T CD28 Silent p.T82T 0.10 TCGA-MP-A4T4-01 2 205829958 205829958 T A PARD3B Missense_Mutation p.D102E 0.15 tolerated(0.6) benign(0.057) TCGA-MP-A4T4-01 2 211454926 211454926 C T CPS1 Missense_Mutation p.L276F 0.12 tolerated(0.13) benign(0.022) TCGA-MP-A4T4-01 2 224462577 224462577 G C SCG2 Missense_Mutation p.S475W 0.12 deleterious(0.01) possibly_damaging(0.818) TCGA-MP-A4T4-01 2 230923853 230923853 G A SLC16A14 Silent p.T72T 0.06 TCGA-MP-A4T4-01 2 231264921 231264921 A T SP140L Missense_Mutation p.H426L 0.10 deleterious(0) probably_damaging(1) TCGA-MP-A4T4-01 2 238296688 238296688 C A COL6A3 Silent p.V283V 0.10 TCGA-MP-A4T4-01 2 240985320 240985320 C T OR6B3 Missense_Mutation p.R57K 0.13 tolerated(1) benign(0.001) TCGA-MP-A4T4-01 2 240985321 240985321 T A OR6B3 Missense_Mutation p.R57W 0.13 deleterious(0) possibly_damaging(0.812) TCGA-MP-A4T4-01 2 242815228 242815228 G C CXXC11 Missense_Mutation p.K507N 0.08 deleterious(0.01) possibly_damaging(0.514) TCGA-MP-A4T4-01 2 27657624 27657624 C T NRBP1 Silent p.A187A 0.25 TCGA-MP-A4T4-01 2 29498275 29498275 G T ALK Nonsense_Mutation p.Y635* 0.16 TCGA-MP-A4T4-01 2 3200658 3200658 C A TSSC1 Missense_Mutation p.S216I 0.15 deleterious(0.01) probably_damaging(0.944) TCGA-MP-A4T4-01 2 33413727 33413727 G C LTBP1 Missense_Mutation p.D504H 0.14 deleterious(0) probably_damaging(0.928) TCGA-MP-A4T4-01 2 50149279 50149279 G T NRXN1 Missense_Mutation p.L1483M 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-MP-A4T4-01 2 50318463 50318463 G A NRXN1 Missense_Mutation p.A1279V 0.11 tolerated(0.13) possibly_damaging(0.637) TCGA-MP-A4T4-01 2 71891415 71891415 G C DYSF Missense_Mutation p.C1674S 0.20 deleterious(0) possibly_damaging(0.888) TCGA-MP-A4T4-01 2 74089345 74089345 A G STAMBP Missense_Mutation p.T412A 0.15 tolerated(0.68) benign(0.036) TCGA-MP-A4T4-01 2 90139574 90139574 T G IGKV1D-16 Missense_Mutation p.S115R 0.09 deleterious(0.02) benign(0.03) TCGA-MP-A4T4-01 3 108139993 108139993 C T MYH15 Silent p.K1277K 0.16 TCGA-MP-A4T4-01 3 111426976 111426976 G A PLCXD2 Missense_Mutation p.D123N 0.09 tolerated(0.27) benign(0.383) TCGA-MP-A4T4-01 3 11400018 11400018 G T ATG7 Missense_Mutation p.V471F 0.11 deleterious(0) probably_damaging(0.95) TCGA-MP-A4T4-01 3 118647436 118647436 G T IGSF11 Missense_Mutation p.T115N 0.15 deleterious(0.01) probably_damaging(0.99) TCGA-MP-A4T4-01 3 122658312 122658312 T A SEMA5B Missense_Mutation p.Y199F 0.08 tolerated(0.18) benign(0.012) TCGA-MP-A4T4-01 3 123634519 123634519 C A CCDC14 Missense_Mutation p.D616Y 0.14 deleterious(0) probably_damaging(0.979) TCGA-MP-A4T4-01 3 124449224 124449224 G A UMPS 5'UTR 0.13 TCGA-MP-A4T4-01 3 133489414 133489414 G T TF Missense_Mutation p.G562V 0.06 deleterious(0) benign(0.112) TCGA-MP-A4T4-01 3 141497311 141497311 A T GRK7 Missense_Mutation p.Q62L 0.10 deleterious(0.05) benign(0.022) TCGA-MP-A4T4-01 3 155200721 155200721 C T PLCH1 Missense_Mutation p.G1040R 0.11 tolerated_low_confidence(0.58) benign(0.003) TCGA-MP-A4T4-01 3 167218056 167218056 C G WDR49 Silent p.L620L 0.17 TCGA-MP-A4T4-01 3 167322236 167322236 C A WDR49 5'UTR 0.34 TCGA-MP-A4T4-01 3 183884240 183884240 G A DVL3 Missense_Mutation p.E304K 0.06 deleterious(0) possibly_damaging(0.582) TCGA-MP-A4T4-01 3 3111831 3111831 C G IL5RA 3'UTR 0.10 TCGA-MP-A4T4-01 3 3111910 3111910 C A IL5RA Nonstop_Mutation p.*421Lext*133 0.06 TCGA-MP-A4T4-01 3 38936211 38936211 A T SCN11A Missense_Mutation p.L883Q 0.16 tolerated(0.33) benign(0.393) TCGA-MP-A4T4-01 3 42632352 42632352 G T SS18L2 5'UTR 0.09 TCGA-MP-A4T4-01 3 46399923 46399923 C G CCR2 Missense_Mutation p.P302R 0.12 deleterious(0) probably_damaging(1) TCGA-MP-A4T4-01 3 4693834 4693834 G C ITPR1 Missense_Mutation p.G295R 0.09 deleterious(0) probably_damaging(1) TCGA-MP-A4T4-01 3 4735201 4735201 G A ITPR1 Missense_Mutation p.V1338M 0.08 tolerated(0.06) probably_damaging(0.999) TCGA-MP-A4T4-01 3 47951053 47951053 C A MAP4 Intron 0.06 TCGA-MP-A4T4-01 3 48454580 48454580 T G PLXNB1 Splice_Site p.X1512_splice 0.07 TCGA-MP-A4T4-01 3 48629629 48629629 C A COL7A1 Silent p.L382L 0.15 TCGA-MP-A4T4-01 3 50339834 50339834 C T HYAL1 Missense_Mutation p.G185D 0.09 tolerated(0.62) benign(0.022) TCGA-MP-A4T4-01 3 58141750 58141750 C T FLNB Missense_Mutation p.P2310L 0.09 tolerated(0.52) probably_damaging(0.999) TCGA-MP-A4T4-01 4 100235202 100235202 C T ADH1B Missense_Mutation p.G202R 0.12 deleterious(0) probably_damaging(0.931) TCGA-MP-A4T4-01 4 114199086 114199086 G T ANK2 Missense_Mutation p.G593W 0.15 probably_damaging(1) TCGA-MP-A4T4-01 4 114277274 114277274 G A ANK2 Silent p.T2500T 0.12 TCGA-MP-A4T4-01 4 120428831 120428831 A G PDE5A Missense_Mutation p.I706T 0.06 tolerated(0.57) benign(0.116) TCGA-MP-A4T4-01 4 126367576 126367576 G T FAT4 Missense_Mutation p.G2441V 0.18 probably_damaging(0.999) TCGA-MP-A4T4-01 4 128626942 128626942 G T INTU Missense_Mutation p.R588I 0.12 deleterious(0) probably_damaging(0.997) TCGA-MP-A4T4-01 4 1369228 1369228 G T UVSSA Silent p.S455S 0.06 TCGA-MP-A4T4-01 4 153273933 153273933 C T FBXW7 Intron 0.21 TCGA-MP-A4T4-01 4 154709790 154709790 G T SFRP2 Missense_Mutation p.H66Q 0.15 deleterious(0) possibly_damaging(0.897) TCGA-MP-A4T4-01 4 156135803 156135803 T C NPY2R Missense_Mutation p.S238P 0.06 deleterious(0.01) benign(0.431) TCGA-MP-A4T4-01 4 173730626 173730626 C A GALNTL6 Missense_Mutation p.A223D 0.16 deleterious(0) probably_damaging(0.997) TCGA-MP-A4T4-01 4 189060920 189060920 C A TRIML1 Missense_Mutation p.R70S 0.14 tolerated(0.19) benign(0.343) TCGA-MP-A4T4-01 4 3422440 3422440 G C RGS12 Missense_Mutation p.D945H 0.15 deleterious(0) probably_damaging(0.94) TCGA-MP-A4T4-01 4 38047450 38047450 A G TBC1D1 Missense_Mutation p.R519G 0.12 tolerated(0.08) benign(0.069) TCGA-MP-A4T4-01 4 42403323 42403323 C A SHISA3 Nonsense_Mutation p.S191* 0.11 TCGA-MP-A4T4-01 4 66217165 66217165 G T EPHA5 Missense_Mutation p.S817Y 0.17 deleterious(0) probably_damaging(0.998) TCGA-MP-A4T4-01 4 69434196 69434196 G T UGT2B17 Missense_Mutation p.L3M 0.11 tolerated(1) benign(0.017) TCGA-MP-A4T4-01 4 70156389 70156389 G T UGT2B28 Missense_Mutation p.M390I 0.13 tolerated(0.06) benign(0.144) TCGA-MP-A4T4-01 4 70460961 70460961 A T UGT2A1 Missense_Mutation p.W501R 0.22 deleterious(0) probably_damaging(1) TCGA-MP-A4T4-01 4 79199899 79199899 G T FRAS1 Splice_Site p.X357_splice 0.09 TCGA-MP-A4T4-01 4 84525896 84525896 T C AGPAT9 Silent p.I427I 0.20 TCGA-MP-A4T4-01 4 89034705 89034705 G A ABCG2 Missense_Mutation p.A315V 0.14 tolerated(0.2) benign(0.002) TCGA-MP-A4T4-01 4 90844395 90844395 G A MMRN1 Silent p.Q309Q 0.19 TCGA-MP-A4T4-01 4 94031908 94031908 G T GRID2 Missense_Mutation p.G180V 0.18 deleterious(0.01) probably_damaging(0.978) TCGA-MP-A4T4-01 4 99960603 99960603 G C METAP1 Missense_Mutation p.R140P 0.16 deleterious(0) probably_damaging(0.967) TCGA-MP-A4T4-01 5 101834385 101834385 G T SLCO6A1 Missense_Mutation p.P55Q 0.08 deleterious(0) probably_damaging(0.997) TCGA-MP-A4T4-01 5 120021757 120021757 T C PRR16 Missense_Mutation p.S67P 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-MP-A4T4-01 5 121356346 121356346 G T SRFBP1 Nonsense_Mutation p.E306* 0.08 TCGA-MP-A4T4-01 5 1219741 1219741 C T SLC6A19 Silent p.C500C 0.05 TCGA-MP-A4T4-01 5 127681244 127681244 C - FBN2 Frame_Shift_Del p.D1008Mfs*99 0.14 TCGA-MP-A4T4-01 5 140167411 140167411 G C PCDHA1 Silent p.A512A 0.21 TCGA-MP-A4T4-01 5 140503736 140503736 C G PCDHB4 Missense_Mutation p.A719G 0.19 deleterious_low_confidence(0.03) benign(0.078) TCGA-MP-A4T4-01 5 140516886 140516886 C A PCDHB5 Missense_Mutation p.R624S 0.17 deleterious_low_confidence(0) possibly_damaging(0.858) TCGA-MP-A4T4-01 5 140563600 140563600 C A PCDHB16 Nonsense_Mutation p.S489* 0.19 TCGA-MP-A4T4-01 5 140783162 140783162 T A PCDHGA9 Missense_Mutation p.S215T 0.09 tolerated_low_confidence(0.46) benign(0.045) TCGA-MP-A4T4-01 5 140812531 140812531 G A PCDHGA12 Silent p.A735A 0.19 TCGA-MP-A4T4-01 5 156768109 156768109 G T CYFIP2 Nonsense_Mutation p.E847* 0.17 TCGA-MP-A4T4-01 5 15936776 15936776 G T FBXL7 Silent p.L319L 0.22 TCGA-MP-A4T4-01 5 172590834 172590834 G T BNIP1 Silent p.L242L 0.07 TCGA-MP-A4T4-01 5 176004515 176004515 C T CDHR2 Missense_Mutation p.A437V 0.19 tolerated(0.09) benign(0.001) TCGA-MP-A4T4-01 5 176018311 176018311 T A CDHR2 Missense_Mutation p.Y1214N 0.14 deleterious(0) possibly_damaging(0.86) TCGA-MP-A4T4-01 5 177547593 177547593 G A N4BP3 Missense_Mutation p.E249K 0.19 deleterious(0.02) benign(0.431) TCGA-MP-A4T4-01 5 24535335 24535335 G T CDH10 Missense_Mutation p.Q234K 0.11 tolerated(0.77) possibly_damaging(0.681) TCGA-MP-A4T4-01 5 26881323 26881323 A G CDH9 Silent p.Y764Y 0.14 TCGA-MP-A4T4-01 5 32230382 32230382 T C MTMR12 Silent p.E582E 0.06 TCGA-MP-A4T4-01 5 33577138 33577138 G C ADAMTS12 Missense_Mutation p.S998C 0.11 deleterious(0.01) probably_damaging(0.951) TCGA-MP-A4T4-01 5 35955712 35955712 A T UGT3A1 Intron 0.15 TCGA-MP-A4T4-01 5 38451500 38451500 C A EGFLAM Missense_Mutation p.P884H 0.05 deleterious(0.04) possibly_damaging(0.639) TCGA-MP-A4T4-01 5 45262472 45262472 G T HCN1 Missense_Mutation p.Q742K 0.23 tolerated_low_confidence(0.92) benign(0.003) TCGA-MP-A4T4-01 5 45396759 45396759 G T HCN1 Missense_Mutation p.H355Q 0.10 deleterious(0) possibly_damaging(0.69) TCGA-MP-A4T4-01 5 57755593 57755593 G C PLK2 Missense_Mutation p.S65W 0.12 deleterious(0.01) benign(0.367) TCGA-MP-A4T4-01 5 71015211 71015211 G A CARTPT Missense_Mutation p.A31T 0.09 tolerated(0.51) benign(0.028) TCGA-MP-A4T4-01 6 124604158 124604158 T A NKAIN2 Missense_Mutation p.V21E 0.13 deleterious(0) possibly_damaging(0.741) TCGA-MP-A4T4-01 6 129511368 129511368 G T LAMA2 Missense_Mutation p.D496Y 0.05 deleterious(0.01) benign(0.071) TCGA-MP-A4T4-01 6 129823803 129823803 G C LAMA2 Splice_Site p.X2749_splice 0.19 TCGA-MP-A4T4-01 6 132061456 132061456 C A ENPP3 Missense_Mutation p.P798H 0.08 tolerated(0.1) possibly_damaging(0.852) TCGA-MP-A4T4-01 6 133005619 133005619 G T VNN1 Missense_Mutation p.T405K 0.07 deleterious(0.04) benign(0.329) TCGA-MP-A4T4-01 6 136472317 136472317 G A PDE7B Silent p.L134L 0.08 TCGA-MP-A4T4-01 6 139564270 139564270 G A TXLNB Missense_Mutation p.S483F 0.05 deleterious(0) benign(0.048) TCGA-MP-A4T4-01 6 143091916 143091916 C A HIVEP2 Silent p.S1320S 0.14 TCGA-MP-A4T4-01 6 145956520 145956520 C A EPM2A Missense_Mutation p.Q193H 0.11 deleterious(0) probably_damaging(1) TCGA-MP-A4T4-01 6 151674107 151674107 T A AKAP12 Missense_Mutation p.S1527R 0.10 tolerated(0.14) benign(0.006) TCGA-MP-A4T4-01 6 161152903 161152903 C A PLG Missense_Mutation p.P522Q 0.05 deleterious(0) probably_damaging(0.993) TCGA-MP-A4T4-01 6 163149103 163149103 C A PACRG Intron 0.11 TCGA-MP-A4T4-01 6 163991813 163991813 A T QKI 3'UTR 0.12 TCGA-MP-A4T4-01 6 167587375 167587375 G A TCP10L2 Silent p.L93L 0.06 TCGA-MP-A4T4-01 6 168445555 168445555 G A KIF25 Missense_Mutation p.R345K 0.09 tolerated(1) benign(0.04) TCGA-MP-A4T4-01 6 169641875 169641875 G T THBS2 Missense_Mutation p.S291R 0.07 tolerated(0.49) benign(0.001) TCGA-MP-A4T4-01 6 170627703 170627703 C T FAM120B Missense_Mutation p.P409S 0.05 tolerated_low_confidence(0.62) benign(0.001) TCGA-MP-A4T4-01 6 17507476 17507476 G T CAP2 Missense_Mutation p.G126V 0.15 deleterious(0.01) probably_damaging(0.995) TCGA-MP-A4T4-01 6 26157343 26157343 A T HIST1H1E 3'UTR 0.13 TCGA-MP-A4T4-01 6 27925506 27925506 C A OR2B6 Missense_Mutation p.T163N 0.06 deleterious(0) probably_damaging(0.99) TCGA-MP-A4T4-01 6 29012573 29012573 C A OR2W1 Missense_Mutation p.C127F 0.12 deleterious(0.01) benign(0.055) TCGA-MP-A4T4-01 6 33284169 33284169 G A ZBTB22 Silent p.S175S 0.12 TCGA-MP-A4T4-01 6 33423791 33423791 G T ZBTB9 Missense_Mutation p.G305V 0.09 deleterious(0.02) benign(0.44) TCGA-MP-A4T4-01 6 556008 556008 G A EXOC2 Silent p.F646F 0.12 TCGA-MP-A4T4-01 6 73951300 73951300 G T KHDC1 Nonsense_Mutation p.Y222* 0.13 TCGA-MP-A4T4-01 6 97052763 97052763 C T FHL5 Silent p.S99S 0.08 TCGA-MP-A4T4-01 7 100238704 100238704 G C TFR2 Missense_Mutation p.P61A 0.14 tolerated(0.24) benign(0.018) TCGA-MP-A4T4-01 7 107815775 107815775 G A NRCAM Missense_Mutation p.A1060V 0.50 tolerated(0.29) benign(0.06) TCGA-MP-A4T4-01 7 112723643 112723643 T C GPR85 3'UTR 0.19 TCGA-MP-A4T4-01 7 113519949 113519949 A G PPP1R3A Missense_Mutation p.C400R 0.18 tolerated(0.32) benign(0.137) TCGA-MP-A4T4-01 7 126882965 126882965 C A GRM8 Silent p.L98L 0.22 TCGA-MP-A4T4-01 7 126882966 126882966 A T GRM8 Missense_Mutation p.L98Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-MP-A4T4-01 7 135406163 135406163 C T SLC13A4 Missense_Mutation p.G70R 0.09 deleterious(0.01) probably_damaging(1) TCGA-MP-A4T4-01 7 141635616 141635616 G T CLEC5A Missense_Mutation p.L115M 0.12 tolerated(0.1) possibly_damaging(0.79) TCGA-MP-A4T4-01 7 141724919 141724919 G A MGAM Missense_Mutation p.G318R 0.16 deleterious(0) probably_damaging(0.981) TCGA-MP-A4T4-01 7 142111599 142111599 G A TRBV5-7 Missense_Mutation p.S46F 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-MP-A4T4-01 7 142251120 142251120 C A TRBV6-4 Silent p.L6L 0.25 TCGA-MP-A4T4-01 7 142364518 142364518 G T TRBV24-1 Missense_Mutation p.M51I 0.21 deleterious(0) probably_damaging(0.994) TCGA-MP-A4T4-01 7 147336206 147336206 G T CNTNAP2 Missense_Mutation p.V636L 0.19 deleterious(0.03) benign(0.358) TCGA-MP-A4T4-01 7 150555073 150555073 G A AOC1 Silent p.L505L 0.10 TCGA-MP-A4T4-01 7 150839138 150839138 A T AGAP3 Missense_Mutation p.K653M 0.18 deleterious(0) probably_damaging(0.97) TCGA-MP-A4T4-01 7 157208747 157208747 G T DNAJB6 Missense_Mutation p.Q312H 0.30 tolerated(0.47) unknown(0) TCGA-MP-A4T4-01 7 20438512 20438512 G - ITGB8 Frame_Shift_Del p.E393Kfs*30 0.11 TCGA-MP-A4T4-01 7 28534607 28534607 T A CREB5 Missense_Mutation p.N53K 0.11 deleterious(0.02) possibly_damaging(0.449) TCGA-MP-A4T4-01 7 28534608 28534608 A T CREB5 Missense_Mutation p.M54L 0.11 tolerated(0.17) benign(0.01) TCGA-MP-A4T4-01 7 40723699 40723699 T C SUGCT Silent p.H385H 0.14 TCGA-MP-A4T4-01 7 48080933 48080933 T A C7orf57 Missense_Mutation p.W20R 0.07 deleterious(0) probably_damaging(0.98) TCGA-MP-A4T4-01 7 57188167 57188167 G A ZNF479 Missense_Mutation p.H319Y 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-MP-A4T4-01 7 64864036 64864036 G T ZNF92 Missense_Mutation p.G337W 0.22 deleterious(0) probably_damaging(1) TCGA-MP-A4T4-01 7 65435326 65435326 C T GUSB Silent p.L473L 0.11 TCGA-MP-A4T4-01 7 72413367 72413367 C A POM121 Silent p.T680T 0.04 TCGA-MP-A4T4-01 7 72892701 72892701 C G BAZ1B Missense_Mutation p.E364Q 0.09 tolerated_low_confidence(0.08) benign(0.013) TCGA-MP-A4T4-01 7 79846821 79846821 C T GNAI1 3'UTR 0.24 TCGA-MP-A4T4-01 7 80141143 80141143 C A GNAT3 Missense_Mutation p.V34L 0.12 tolerated(0.17) possibly_damaging(0.489) TCGA-MP-A4T4-01 7 82585284 82585284 C A PCLO Missense_Mutation p.G1662V 0.24 unknown(0) TCGA-MP-A4T4-01 7 82595459 82595459 A G PCLO Silent p.P1215P 0.22 TCGA-MP-A4T4-01 7 94053648 94053648 G T COL1A2 Nonsense_Mutation p.G856* 0.15 TCGA-MP-A4T4-01 7 99022942 99022942 T C ATP5J2-PTCD1 Missense_Mutation p.R454G 0.17 tolerated(0.23) benign(0.011) TCGA-MP-A4T4-01 8 10469652 10469652 G T RP1L1 Missense_Mutation p.S652R 0.12 possibly_damaging(0.86) TCGA-MP-A4T4-01 8 10469740 10469740 C A RP1L1 Missense_Mutation p.G623V 0.19 probably_damaging(0.96) TCGA-MP-A4T4-01 8 106815037 106815037 C G ZFPM2 Nonsense_Mutation p.Y909* 0.30 TCGA-MP-A4T4-01 8 110255367 110255367 C A NUDCD1 Missense_Mutation p.Q541H 0.27 deleterious(0.01) benign(0.168) TCGA-MP-A4T4-01 8 113303862 113303862 C A CSMD3 Nonsense_Mutation p.G2951* 0.09 TCGA-MP-A4T4-01 8 124985674 124985674 G T FER1L6 Missense_Mutation p.V150F 0.33 deleterious(0.03) probably_damaging(1) TCGA-MP-A4T4-01 8 128429069 128429069 G T POU5F1B Missense_Mutation p.G320C 0.24 tolerated(0.07) probably_damaging(0.961) TCGA-MP-A4T4-01 8 139164810 139164810 G T FAM135B Silent p.T636T 0.09 TCGA-MP-A4T4-01 8 142445289 142445289 G T PTP4A3 3'Flank 0.22 TCGA-MP-A4T4-01 8 143922575 143922575 G C GML Missense_Mutation p.D39H 0.09 tolerated(0.05) possibly_damaging(0.693) TCGA-MP-A4T4-01 8 17063254 17063254 A G ZDHHC2 Silent p.T189T 0.11 TCGA-MP-A4T4-01 8 17796448 17796448 A G PCM1 Missense_Mutation p.N181S 0.15 tolerated(0.34) benign(0.117) TCGA-MP-A4T4-01 8 27764669 27764669 G T SCARA5 Missense_Mutation p.F364L 0.16 tolerated(0.44) possibly_damaging(0.832) TCGA-MP-A4T4-01 8 2910038 2910038 C A CSMD1 Missense_Mutation p.V2536L 0.21 benign(0.11) TCGA-MP-A4T4-01 8 2975921 2975921 C A CSMD1 Missense_Mutation p.A2144S 0.14 benign(0.163) TCGA-MP-A4T4-01 8 41836245 41836245 G A KAT6A Silent p.L320L 0.14 TCGA-MP-A4T4-01 8 48746958 48746958 C T PRKDC Splice_Site p.X2650_splice 0.11 TCGA-MP-A4T4-01 8 51617237 51617237 G A SNTG1 Silent p.V372V 0.12 TCGA-MP-A4T4-01 8 51617238 51617238 G C SNTG1 Missense_Mutation p.E373Q 0.12 deleterious(0) probably_damaging(0.994) TCGA-MP-A4T4-01 8 53596279 53596279 C A RB1CC1 Missense_Mutation p.D67Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-MP-A4T4-01 8 71646129 71646129 G A XKR9 Missense_Mutation p.G198R 0.15 tolerated(0.55) benign(0.315) TCGA-MP-A4T4-01 8 72184123 72184123 G T EYA1 Missense_Mutation p.T279K 0.11 tolerated(0.11) possibly_damaging(0.571) TCGA-MP-A4T4-01 8 77766696 77766696 C A ZFHX4 Missense_Mutation p.H2513Q 0.10 probably_damaging(0.962) TCGA-MP-A4T4-01 8 88885901 88885901 C A DCAF4L2 Missense_Mutation p.G100V 0.15 deleterious(0) probably_damaging(0.988) TCGA-MP-A4T4-01 8 95523749 95523749 C A KIAA1429 Silent p.T1018T 0.16 TCGA-MP-A4T4-01 9 101797391 101797391 C T COL15A1 Silent p.P725P 0.21 TCGA-MP-A4T4-01 9 107367201 107367201 T A OR13C2 Missense_Mutation p.K236N 0.08 deleterious(0) probably_damaging(0.999) TCGA-MP-A4T4-01 9 119097165 119097165 C G PAPPA Missense_Mutation p.N1141K 0.19 tolerated(0.62) benign(0.403) TCGA-MP-A4T4-01 9 119802225 119802225 C T ASTN2 Silent p.V381V 0.07 TCGA-MP-A4T4-01 9 119976695 119976695 G T ASTN2 Silent p.T319T 0.17 TCGA-MP-A4T4-01 9 123165239 123165239 G A CDK5RAP2 Silent p.L1718L 0.08 TCGA-MP-A4T4-01 9 134183564 134183564 C A PPAPDC3 Missense_Mutation p.H236N 0.11 tolerated(0.74) possibly_damaging(0.618) TCGA-MP-A4T4-01 9 135940592 135940592 G C CEL Missense_Mutation p.G172A 0.06 deleterious(0) probably_damaging(0.997) TCGA-MP-A4T4-01 9 140166575 140166575 A G NELFB Missense_Mutation p.H463R 0.13 deleterious(0) probably_damaging(0.92) TCGA-MP-A4T4-01 9 18675895 18675895 C A ADAMTSL1 Missense_Mutation p.P376T 0.05 deleterious(0) probably_damaging(1) TCGA-MP-A4T4-01 9 33386978 33386978 C A AQP7 Missense_Mutation p.G86V 0.04 deleterious(0) probably_damaging(1) TCGA-MP-A4T4-01 9 33941703 33941703 T C UBAP2 Missense_Mutation p.R625G 0.16 tolerated(0.08) possibly_damaging(0.715) TCGA-MP-A4T4-01 9 37735666 37735666 C A FRMPD1 Missense_Mutation p.R446S 0.13 deleterious(0) probably_damaging(0.978) TCGA-MP-A4T4-01 9 73150881 73150881 G A TRPM3 Silent p.S1704S 0.11 TCGA-MP-A4T4-01 9 77353506 77353506 A T TRPM6 Missense_Mutation p.Y1865N 0.10 deleterious(0) probably_damaging(0.982) TCGA-MP-A4T4-01 9 84607377 84607377 C A SPATA31D1 Missense_Mutation p.F664L 0.06 tolerated(0.46) possibly_damaging(0.503) TCGA-MP-A4T4-01 9 87339212 87339212 C A NTRK2 Missense_Mutation p.S265Y 0.19 deleterious(0.03) possibly_damaging(0.891) TCGA-MP-A4T4-01 9 91690072 91690072 C T SHC3 Silent p.L227L 0.07 TCGA-MP-A4T4-01 9 95609412 95609412 C A ZNF484 Nonsense_Mutation p.E555* 0.04 TCGA-MP-A4T4-01 X 100625027 100625027 G A BTK Missense_Mutation p.T117I 0.13 deleterious(0) possibly_damaging(0.828) TCGA-MP-A4T4-01 X 101153127 101153127 C A ZMAT1 Missense_Mutation p.G99C 0.18 deleterious(0) possibly_damaging(0.695) TCGA-MP-A4T4-01 X 102528906 102528906 C A TCEAL5 Missense_Mutation p.G196C 0.16 deleterious(0.03) probably_damaging(0.986) TCGA-MP-A4T4-01 X 106228379 106228379 A T MORC4 Missense_Mutation p.F207L 0.04 tolerated(0.4) benign(0.442) TCGA-MP-A4T4-01 X 107224317 107224317 C - TEX13B Frame_Shift_Del p.G311Afs*74 0.08 TCGA-MP-A4T4-01 X 109694116 109694116 C A RGAG1 Missense_Mutation p.L91I 0.07 tolerated(0.06) probably_damaging(0.999) TCGA-MP-A4T4-01 X 117527114 117527114 C A WDR44 Missense_Mutation p.P236T 0.15 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-MP-A4T4-01 X 117540951 117540951 C G WDR44 Missense_Mutation p.Q499E 0.11 tolerated(0.1) benign(0.017) TCGA-MP-A4T4-01 X 117959311 117959311 C T ZCCHC12 Missense_Mutation p.P35L 0.08 deleterious(0.01) probably_damaging(0.927) TCGA-MP-A4T4-01 X 118724569 118724569 G C NKRF Silent p.L288L 0.10 TCGA-MP-A4T4-01 X 119077419 119077419 G T NKAP Silent p.S50S 0.19 TCGA-MP-A4T4-01 X 123556329 123556329 G T TENM1 Missense_Mutation p.L1422M 0.13 tolerated(0.05) benign(0.258) TCGA-MP-A4T4-01 X 123637455 123637455 C A TENM1 Nonsense_Mutation p.G1134* 0.12 TCGA-MP-A4T4-01 X 123657355 123657355 G T TENM1 Silent p.V964V 0.12 TCGA-MP-A4T4-01 X 125685528 125685528 G T DCAF12L1 Nonsense_Mutation p.S355* 0.07 TCGA-MP-A4T4-01 X 128599874 128599874 C A SMARCA1 Nonsense_Mutation p.G922* 0.13 TCGA-MP-A4T4-01 X 130222706 130222706 C G ARHGAP36 Missense_Mutation p.R531G 0.17 tolerated_low_confidence(0.21) benign(0.09) TCGA-MP-A4T4-01 X 135750262 135750262 C A ARHGEF6 Missense_Mutation p.V753L 0.10 deleterious(0.01) benign(0.082) TCGA-MP-A4T4-01 X 139865578 139865578 C T CDR1 3'UTR 0.15 TCGA-MP-A4T4-01 X 142717508 142717508 G T SLITRK4 Missense_Mutation p.P473T 0.16 deleterious(0.03) possibly_damaging(0.812) TCGA-MP-A4T4-01 X 152031267 152031267 G T NSDHL Missense_Mutation p.R181M 0.11 deleterious(0.03) benign(0.098) TCGA-MP-A4T4-01 X 152088940 152088940 C A ZNF185 Missense_Mutation p.A200D 0.18 deleterious(0) possibly_damaging(0.817) TCGA-MP-A4T4-01 X 153046700 153046700 C T SRPK3 Missense_Mutation p.S30L 0.12 tolerated_low_confidence(0.24) unknown(0) TCGA-MP-A4T4-01 X 153132121 153132121 C T L1CAM Missense_Mutation p.G805D 0.15 deleterious(0) probably_damaging(1) TCGA-MP-A4T4-01 X 153608050 153608050 G T EMD Missense_Mutation p.G28V 0.12 deleterious(0) probably_damaging(1) TCGA-MP-A4T4-01 X 153626716 153626716 G T RPL10 5'UTR 0.13 TCGA-MP-A4T4-01 X 154132244 154132244 C T F8 Missense_Mutation p.G1979R 0.14 deleterious(0) probably_damaging(1) TCGA-MP-A4T4-01 X 154293986 154293986 T A MTCP1 Missense_Mutation p.T62S 0.09 tolerated(0.14) benign(0.019) TCGA-MP-A4T4-01 X 155003852 155003852 C A SPRY3 Missense_Mutation p.P107T 0.14 tolerated(0.69) benign(0.412) TCGA-MP-A4T4-01 X 155003853 155003853 C A SPRY3 Missense_Mutation p.P107H 0.15 tolerated(1) benign(0.008) TCGA-MP-A4T4-01 X 16888213 16888213 G T RBBP7 5'Flank 0.13 TCGA-MP-A4T4-01 X 20071027 20071027 G A MAP7D2 Silent p.S188S 0.13 TCGA-MP-A4T4-01 X 26213004 26213004 G T MAGEB6 Silent p.V347V 0.11 TCGA-MP-A4T4-01 X 34961618 34961618 C A FAM47B Missense_Mutation p.R224S 0.14 tolerated(0.42) benign(0.059) TCGA-MP-A4T4-01 X 54956235 54956235 T A TRO Missense_Mutation p.N1026K 0.08 deleterious(0.01) possibly_damaging(0.766) TCGA-MP-A4T4-01 X 57162438 57162438 G T SPIN2A Missense_Mutation p.T198K 0.14 deleterious(0.04) benign(0.001) TCGA-MP-A4T4-01 X 6069297 6069297 C A NLGN4X Nonsense_Mutation p.E71* 0.11 TCGA-MP-A4T4-01 X 64722527 64722527 G T ZC3H12B Missense_Mutation p.G650V 0.24 tolerated(0.3) benign(0.001) TCGA-MP-A4T4-01 X 69454538 69454538 C A AWAT1 5'UTR 0.25 TCGA-MP-A4T4-01 X 70341627 70341627 G T MED12 Missense_Mutation p.Q354H 0.11 probably_damaging(0.999) TCGA-MP-A4T4-01 X 71425637 71425637 G T ERCC6L Missense_Mutation p.H994N 0.12 tolerated(0.48) benign(0.002) TCGA-MP-A4T4-01 X 74273222 74273222 C T ABCB7 Missense_Mutation p.G749R 0.07 deleterious_low_confidence(0) probably_damaging(1) TCGA-MP-A4T4-01 X 78010344 78010344 C A LPAR4 5'UTR 0.15 TCGA-MP-A4T4-01 X 84363240 84363240 T G SATL1 Missense_Mutation p.Q245H 0.12 deleterious(0.01) possibly_damaging(0.829) TCGA-MP-A4T4-01 X 84363392 84363392 G T SATL1 Missense_Mutation p.Q195K 0.05 deleterious(0.04) benign(0.092) TCGA-MP-A4T4-01 X 84363866 84363866 C A SATL1 Missense_Mutation p.G37W 0.19 deleterious(0.02) benign(0.005) TCGA-MP-A4T4-01 X 84510735 84510735 G A ZNF711 Missense_Mutation p.V184I 0.20 tolerated(0.38) possibly_damaging(0.739) TCGA-MP-A4T4-01 X 86773044 86773044 G C KLHL4 Missense_Mutation p.G50R 0.08 deleterious_low_confidence(0) possibly_damaging(0.856) TCGA-MP-A4T4-01 X 88009255 88009255 C G CPXCR1 Missense_Mutation p.I280M 0.15 deleterious(0.01) possibly_damaging(0.844) TCGA-MP-A4T4-01 X 91090922 91090922 C A PCDH11X Missense_Mutation p.P140Q 0.11 tolerated(0.05) possibly_damaging(0.742) TCGA-MP-A4T4-01 X 96354717 96354717 C G DIAPH2 Missense_Mutation p.Q758E 0.11 tolerated(0.29) probably_damaging(0.991) TCGA-MP-A4T4-01 X 99551345 99551345 C A PCDH19 Missense_Mutation p.S1126I 0.21 deleterious_low_confidence(0) benign(0) TCGA-MP-A4T6-01 11 113075148 113075148 G A NCAM1 Missense_Mutation p.D149N 0.12 tolerated(0.25) benign(0.314) TCGA-MP-A4T6-01 11 118047197 118047197 A G SCN2B 5'UTR 0.23 TCGA-MP-A4T6-01 11 1263123 1263123 G A MUC5B Silent p.T1671T 0.33 TCGA-MP-A4T6-01 11 16823301 16823301 G A PLEKHA7 Nonsense_Mutation p.Q741* 0.15 TCGA-MP-A4T6-01 11 230517 230517 G T SIRT3 Missense_Mutation p.H248N 0.15 deleterious(0) probably_damaging(0.999) TCGA-MP-A4T6-01 11 6498959 6498959 C T ARFIP2 Missense_Mutation p.E287K 0.10 deleterious(0) benign(0.372) TCGA-MP-A4T6-01 12 121202748 121202748 T C SPPL3 3'UTR 0.14 TCGA-MP-A4T6-01 12 53722857 53722857 G T SP7 Silent p.P123P 0.14 TCGA-MP-A4T6-01 12 58176936 58176936 T A TSFM Missense_Mutation p.F34Y 0.19 tolerated(0.06) possibly_damaging(0.478) TCGA-MP-A4T6-01 14 105410281 105410281 T C AHNAK2 Missense_Mutation p.D3836G 0.45 benign(0.376) TCGA-MP-A4T6-01 14 51224990 51224990 C T NIN Missense_Mutation p.E920K 0.44 tolerated(0.07) possibly_damaging(0.661) TCGA-MP-A4T6-01 15 39874036 39874039 TGCT GCC THBS1 5'UTR 0.37 TCGA-MP-A4T6-01 15 52404691 52404691 A G BCL2L10 Missense_Mutation p.V78A 0.54 tolerated(0.12) benign(0.111) TCGA-MP-A4T6-01 15 76016572 76016572 T C ODF3L1 Missense_Mutation p.V11A 0.12 tolerated_low_confidence(0.25) benign(0.15) TCGA-MP-A4T6-01 16 15695990 15695990 C T KIAA0430 Missense_Mutation p.R1495Q 0.15 tolerated(0.05) probably_damaging(0.999) TCGA-MP-A4T6-01 16 28925559 28925559 C G RABEP2 Missense_Mutation p.E298Q 0.15 deleterious(0.05) benign(0.005) TCGA-MP-A4T6-01 16 67271205 67271205 G C FHOD1 Silent p.V310V 0.13 TCGA-MP-A4T6-01 16 67271384 67271384 G C FHOD1 Missense_Mutation p.I281M 0.16 deleterious(0) probably_damaging(0.997) TCGA-MP-A4T6-01 16 86544852 86544852 G T FOXF1 Missense_Mutation p.G226V 0.42 deleterious(0) benign(0.071) TCGA-MP-A4T6-01 16 89977541 89977541 G A TCF25 Silent p.L642L 0.30 TCGA-MP-A4T6-01 16 89977623 89977623 G T TCF25 Nonsense_Mutation p.E670* 0.29 TCGA-MP-A4T6-01 17 62522248 62522248 A T CEP95 Missense_Mutation p.K361M 0.08 deleterious(0.01) possibly_damaging(0.792) TCGA-MP-A4T6-01 17 78320203 78320203 G A RNF213 Missense_Mutation p.G2690R 0.08 probably_damaging(0.997) TCGA-MP-A4T6-01 19 10568764 10568764 G C PDE4A Missense_Mutation p.E363Q 0.11 tolerated(0.06) benign(0.32) TCGA-MP-A4T6-01 19 17743615 17743615 T C UNC13A Missense_Mutation p.K1135R 0.09 deleterious(0.04) benign(0.002) TCGA-MP-A4T6-01 19 19748831 19748831 G A GMIP Silent p.V275V 0.50 TCGA-MP-A4T6-01 19 36259105 36259105 G C C19orf55 Missense_Mutation p.K423N 0.24 unknown(0) TCGA-MP-A4T6-01 19 39421887 39421887 C T MRPS12 5'UTR 0.14 TCGA-MP-A4T6-01 19 9072666 9072666 A G MUC16 Missense_Mutation p.V4927A 0.04 unknown(0) TCGA-MP-A4T6-01 19 9077501 9077501 G A MUC16 Silent p.S3315S 0.23 TCGA-MP-A4T6-01 1 152286961 152286961 C G FLG Missense_Mutation p.R134T 0.10 possibly_damaging(0.52) TCGA-MP-A4T6-01 1 161953644 161953644 G A OLFML2B Missense_Mutation p.R692W 0.13 deleterious(0) probably_damaging(0.999) TCGA-MP-A4T6-01 1 175335092 175335092 G A TNR Missense_Mutation p.P746S 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-MP-A4T6-01 1 181024418 181024418 T A MR1 3'UTR 0.13 TCGA-MP-A4T6-01 1 183559585 183559585 T A NCF2 5'UTR 0.25 TCGA-MP-A4T6-01 1 186062653 186062653 G T HMCN1 Nonsense_Mutation p.E3350* 0.13 TCGA-MP-A4T6-01 1 197407783 197407783 C G CRB1 Missense_Mutation p.R1286G 0.32 tolerated(0.2) benign(0.002) TCGA-MP-A4T6-01 1 28600590 28600590 G A SESN2 Missense_Mutation p.C314Y 0.28 tolerated(1) possibly_damaging(0.817) TCGA-MP-A4T6-01 1 36316528 36316528 T C AGO4 Missense_Mutation p.L784P 0.16 deleterious(0) probably_damaging(0.998) TCGA-MP-A4T6-01 1 42047825 42047825 C T HIVEP3 Missense_Mutation p.E882K 0.08 probably_damaging(0.993) TCGA-MP-A4T6-01 1 62995045 62995045 C T DOCK7 Silent p.R1197R 0.17 TCGA-MP-A4T6-01 1 63307117 63307117 C T ATG4C Missense_Mutation p.P370S 0.23 deleterious(0) probably_damaging(1) TCGA-MP-A4T6-01 20 18143376 18143376 G A CSRP2BP Silent p.P486P 0.09 TCGA-MP-A4T6-01 20 55208625 55208625 G A TFAP2C Missense_Mutation p.R268K 0.28 deleterious(0.01) benign(0.402) TCGA-MP-A4T6-01 20 61461720 61461720 C T COL9A3 Silent p.L390L 0.29 TCGA-MP-A4T6-01 22 18018336 18018336 C T CECR2 Silent p.D407D 0.49 TCGA-MP-A4T6-01 2 100210349 100210349 C T AFF3 Missense_Mutation p.E617K 0.22 deleterious(0) possibly_damaging(0.462) TCGA-MP-A4T6-01 2 238283328 238283328 G A COL6A3 Silent p.L1136L 0.15 TCGA-MP-A4T6-01 2 26950617 26950617 C T KCNK3 Silent p.L122L 0.22 TCGA-MP-A4T6-01 2 27676911 27676911 G A IFT172 Nonsense_Mutation p.Q1217* 0.20 TCGA-MP-A4T6-01 2 27693878 27693878 C T IFT172 Missense_Mutation p.V537M 0.46 deleterious(0) probably_damaging(1) TCGA-MP-A4T6-01 3 123411657 123411657 C T MYLK Missense_Mutation p.D1164N 0.64 deleterious(0.04) benign(0.288) TCGA-MP-A4T6-01 3 140397395 140397395 C G TRIM42 Silent p.L108L 0.30 TCGA-MP-A4T6-01 3 171320773 171320773 C T PLD1 3'UTR 0.50 TCGA-MP-A4T6-01 3 47950808 47950808 G A MAP4 Intron 0.11 TCGA-MP-A4T6-01 3 48697251 48697251 T C CELSR3 Silent p.P939P 0.26 TCGA-MP-A4T6-01 3 96963154 96963154 C T EPHA6 Intron 0.14 TCGA-MP-A4T6-01 3 9974846 9974846 G T IL17RC Missense_Mutation p.V649F 0.70 deleterious(0) probably_damaging(0.948) TCGA-MP-A4T6-01 4 52779738 52779738 A G DCUN1D4 Silent p.K289K 0.14 TCGA-MP-A4T6-01 4 80328399 80328399 T G GK2 Missense_Mutation p.E319A 0.16 deleterious(0) probably_damaging(1) TCGA-MP-A4T6-01 5 11236849 11236849 G C CTNND2 Missense_Mutation p.A572G 0.12 deleterious(0.02) probably_damaging(0.961) TCGA-MP-A4T6-01 5 137492882 137492882 G C BRD8 Intron 0.11 TCGA-MP-A4T6-01 5 13920675 13920675 T C DNAH5 Missense_Mutation p.T238A 0.38 benign(0) TCGA-MP-A4T6-01 5 147209174 147209174 G A SPINK1 Silent p.S25S 0.24 TCGA-MP-A4T6-01 5 169101400 169101400 C A DOCK2 Missense_Mutation p.L141M 0.09 tolerated(0.1) possibly_damaging(0.557) TCGA-MP-A4T6-01 5 179306709 179306709 C A TBC1D9B Silent p.A445A 0.28 TCGA-MP-A4T6-01 5 23522936 23522936 C T PRDM9 Missense_Mutation p.P275L 0.32 deleterious(0) possibly_damaging(0.584) TCGA-MP-A4T6-01 5 66479084 66479084 G T CD180 Missense_Mutation p.H529Q 0.65 deleterious(0.03) benign(0.023) TCGA-MP-A4T6-01 6 10881939 10881939 G C GCM2 Missense_Mutation p.Q30E 0.21 deleterious(0) benign(0.138) TCGA-MP-A4T6-01 6 17809015 17809015 A C KIF13A Missense_Mutation p.L716R 0.35 deleterious(0) probably_damaging(0.987) TCGA-MP-A4T6-01 6 27100920 27100920 C A HIST1H2AG Missense_Mutation p.L24I 0.43 deleterious_low_confidence(0.02) possibly_damaging(0.632) TCGA-MP-A4T6-01 6 34494074 34494074 G A PACSIN1 5'UTR 0.17 TCGA-MP-A4T6-01 6 36098330 36098330 C T MAPK13 5'UTR 0.33 TCGA-MP-A4T6-01 6 49663607 49663607 C T CRISP2 Silent p.P182P 0.07 TCGA-MP-A4T6-01 6 51524441 51524441 G A PKHD1 Missense_Mutation p.L3495F 0.17 tolerated(0.1) possibly_damaging(0.671) TCGA-MP-A4T6-01 6 90333173 90333173 G A ANKRD6 Silent p.V314V 0.42 TCGA-MP-A4T6-01 6 90438841 90438841 T G MDN1 Missense_Mutation p.N1720H 0.60 benign(0.005) TCGA-MP-A4T6-01 7 105645063 105645063 C A CDHR3 Missense_Mutation p.R328S 0.37 tolerated(0.15) possibly_damaging(0.804) TCGA-MP-A4T6-01 7 143826975 143826975 C T OR2A14 Missense_Mutation p.T257M 0.09 tolerated(1) benign(0.008) TCGA-MP-A4T6-01 7 150935688 150935688 T C CHPF2 Missense_Mutation p.L747P 0.15 tolerated(0.15) possibly_damaging(0.884) TCGA-MP-A4T6-01 7 150935689 150935689 C T CHPF2 Silent p.L747L 0.14 TCGA-MP-A4T6-01 7 157396739 157396739 C T PTPRN2 Silent p.A791A 0.10 TCGA-MP-A4T6-01 7 55242469 55242478 TTAAGAGAAG C EGFR In_Frame_Del p.L747_A750delinsP 0.28 TCGA-MP-A4T6-01 7 99022877 99022877 G A ATP5J2-PTCD1 Silent p.L475L 0.29 TCGA-MP-A4T6-01 8 26722336 26722336 C T ADRA1A Missense_Mutation p.V51I 0.05 deleterious(0.02) probably_damaging(0.999) TCGA-MP-A4T6-01 8 28206270 28206270 C T ZNF395 Missense_Mutation p.R503Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-MP-A4T6-01 8 29194805 29194805 T C DUSP4 Missense_Mutation p.E308G 0.17 deleterious(0) probably_damaging(0.983) TCGA-MP-A4T6-01 8 37732478 37732478 T C RAB11FIP1 Missense_Mutation p.M393V 0.10 deleterious(0) benign(0.307) TCGA-MP-A4T6-01 8 54142271 54142271 G A OPRK1 Silent p.I243I 0.13 TCGA-MP-A4T6-01 9 107457305 107457305 T A OR13D1 Nonsense_Mutation p.C201* 0.13 TCGA-MP-A4T6-01 9 130494250 130494250 G C TOR2A 3'UTR 0.30 TCGA-MP-A4T6-01 9 139650908 139650908 G T LCN8 Intron 0.16 TCGA-MP-A4T6-01 9 140108780 140108780 A G NDOR1 Missense_Mutation p.M213V 0.23 tolerated(0.82) benign(0.001) TCGA-MP-A4T6-01 9 35403451 35403451 G A UNC13B Missense_Mutation p.D1449N 0.25 tolerated(0.2) probably_damaging(1) TCGA-MP-A4T6-01 X 49021098 49021098 C G MAGIX Missense_Mutation p.H84D 0.06 deleterious(0.04) benign(0.206) TCGA-MP-A4T7-01 10 104174690 104174690 C T PSD Missense_Mutation p.E352K 0.09 tolerated(0.4) benign(0.01) TCGA-MP-A4T7-01 10 105824201 105824201 C A COL17A1 Missense_Mutation p.G254V 0.56 unknown(0) TCGA-MP-A4T7-01 10 117027919 117027919 A G ATRNL1 Missense_Mutation p.M700V 0.49 tolerated(0.87) benign(0) TCGA-MP-A4T7-01 10 117704271 117704271 G A ATRNL1 Missense_Mutation p.R1374H 0.16 tolerated(0.39) benign(0.001) TCGA-MP-A4T7-01 10 52619741 52619741 G T A1CF 5'UTR 0.56 TCGA-MP-A4T7-01 10 73406545 73406545 G T CDH23 3'UTR 0.16 TCGA-MP-A4T7-01 10 85973960 85973960 C A CDHR1 Silent p.T721T 0.42 TCGA-MP-A4T7-01 11 118948590 118948590 T G VPS11 Missense_Mutation p.N524K 0.17 tolerated(0.62) benign(0.341) TCGA-MP-A4T7-01 11 120744853 120744853 G T GRIK4 Missense_Mutation p.G329C 0.11 deleterious(0.01) possibly_damaging(0.869) TCGA-MP-A4T7-01 11 44077843 44077843 C A ACCSL Missense_Mutation p.Q432K 0.36 deleterious(0) probably_damaging(0.996) TCGA-MP-A4T7-01 11 46776449 46776449 T A CKAP5 Missense_Mutation p.N1620Y 0.22 tolerated(0.17) benign(0.429) TCGA-MP-A4T7-01 11 51411695 51411695 A T OR4A5 Nonsense_Mutation p.L234* 0.17 TCGA-MP-A4T7-01 11 5529959 5529959 G A UBQLN3 Missense_Mutation p.P277L 0.13 deleterious(0) possibly_damaging(0.807) TCGA-MP-A4T7-01 11 68201169 68201169 A T LRP5 Missense_Mutation p.D1288V 0.10 deleterious(0) probably_damaging(0.999) TCGA-MP-A4T7-01 11 89531628 89531628 C A TRIM49 Missense_Mutation p.W343C 0.24 deleterious(0) probably_damaging(1) TCGA-MP-A4T7-01 11 92568124 92568124 T C FAT3 Silent p.A3320A 0.50 TCGA-MP-A4T7-01 12 112843080 112843080 C A RPL6 Missense_Mutation p.R272L 0.22 tolerated(0.24) benign(0.038) TCGA-MP-A4T7-01 12 113398949 113398949 C A OAS3 Silent p.G577G 0.25 TCGA-MP-A4T7-01 12 132400636 132400636 G T ULK1 Missense_Mutation p.G604C 0.21 tolerated(0.06) possibly_damaging(0.594) TCGA-MP-A4T7-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.27 deleterious(0) possibly_damaging(0.479) TCGA-MP-A4T7-01 12 313794 313794 C T SLC6A12 Silent p.A95A 0.16 TCGA-MP-A4T7-01 12 32135427 32135427 G T KIAA1551 Missense_Mutation p.R513L 0.22 tolerated(1) benign(0.001) TCGA-MP-A4T7-01 12 4920453 4920453 G T KCNA6 Missense_Mutation p.A416S 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-MP-A4T7-01 12 57858477 57858477 G A GLI1 Missense_Mutation p.R72Q 0.11 deleterious(0) probably_damaging(0.986) TCGA-MP-A4T7-01 12 78400264 78400264 G C NAV3 Missense_Mutation p.G316R 0.26 deleterious(0.02) probably_damaging(1) TCGA-MP-A4T7-01 13 101755662 101755662 G T NALCN Missense_Mutation p.P973H 0.19 deleterious(0) probably_damaging(0.998) TCGA-MP-A4T7-01 13 108881948 108881948 G T ABHD13 Missense_Mutation p.G128C 0.19 deleterious(0) probably_damaging(1) TCGA-MP-A4T7-01 13 49771056 49771056 G T FNDC3A Missense_Mutation p.G757V 0.15 deleterious(0) benign(0.048) TCGA-MP-A4T7-01 13 58207686 58207686 A G PCDH17 Missense_Mutation p.K336E 0.21 deleterious(0) probably_damaging(0.999) TCGA-MP-A4T7-01 14 101531868 101531868 G C MIR412 RNA 0.13 TCGA-MP-A4T7-01 14 105609326 105609326 C T JAG2 Silent p.P1141P 0.18 TCGA-MP-A4T7-01 14 107170052 107170052 G T IGHV1-69 Missense_Mutation p.A77E 0.17 deleterious(0) benign(0.092) TCGA-MP-A4T7-01 14 19559091 19559091 C A POTEG Missense_Mutation p.A246D 0.19 deleterious(0) probably_damaging(1) TCGA-MP-A4T7-01 14 21052360 21052360 C G RNASE11 Missense_Mutation p.G92R 0.08 tolerated(0.39) probably_damaging(0.93) TCGA-MP-A4T7-01 14 21679307 21679307 G A HNRNPC 3'UTR 0.16 TCGA-MP-A4T7-01 14 23549650 23549650 C T ACIN1 Silent p.Q356Q 0.16 TCGA-MP-A4T7-01 14 23826487 23826487 A T EFS Missense_Mutation p.L545Q 0.20 deleterious(0) probably_damaging(1) TCGA-MP-A4T7-01 14 24771457 24771457 C T NOP9 Nonsense_Mutation p.R324* 0.18 TCGA-MP-A4T7-01 14 76643024 76643024 G T GPATCH2L Missense_Mutation p.R348L 0.14 tolerated(0.58) benign(0.313) TCGA-MP-A4T7-01 14 80971341 80971341 C G CEP128 Missense_Mutation p.G1032A 0.09 tolerated(0.89) benign(0.009) TCGA-MP-A4T7-01 15 22382919 22382919 G T OR4N4 Missense_Mutation p.W149C 0.23 deleterious(0.01) probably_damaging(1) TCGA-MP-A4T7-01 15 23811086 23811086 A T MKRN3 Missense_Mutation p.R53W 0.28 tolerated(0.09) benign(0.237) TCGA-MP-A4T7-01 15 23932097 23932097 G T NDN Missense_Mutation p.P90T 0.36 tolerated(0.78) probably_damaging(0.997) TCGA-MP-A4T7-01 15 49170594 49170594 G T EID1 Missense_Mutation p.S74I 0.24 tolerated(0.06) benign(0.367) TCGA-MP-A4T7-01 15 52017012 52017012 C T LYSMD2 Missense_Mutation p.A194T 0.22 deleterious(0) probably_damaging(0.968) TCGA-MP-A4T7-01 15 54527229 54527229 G T UNC13C Missense_Mutation p.A1025S 0.13 tolerated_low_confidence(0.12) benign(0.004) TCGA-MP-A4T7-01 15 74473635 74473635 C T STRA6 Splice_Site p.X601_splice 0.25 TCGA-MP-A4T7-01 15 89417110 89417110 G T ACAN Missense_Mutation p.R2457S 0.19 deleterious(0) probably_damaging(0.998) TCGA-MP-A4T7-01 16 19127416 19127416 C T ITPRIPL2 3'UTR 0.35 TCGA-MP-A4T7-01 16 46696267 46696267 T A VPS35 Missense_Mutation p.Q652L 0.09 deleterious(0) possibly_damaging(0.899) TCGA-MP-A4T7-01 16 66651243 66651243 G A CMTM4 Silent p.N214N 0.37 TCGA-MP-A4T7-01 17 16004603 16004603 C T NCOR1 Missense_Mutation p.S884N 0.29 possibly_damaging(0.882) TCGA-MP-A4T7-01 17 3101236 3101236 A T OR1A2 Missense_Mutation p.I142F 0.12 tolerated(0.22) benign(0.004) TCGA-MP-A4T7-01 17 39305766 39305766 C A KRTAP4-5 Missense_Mutation p.C85F 0.12 unknown(0) TCGA-MP-A4T7-01 17 46627886 46627886 G C HOXB3 Missense_Mutation p.S369C 0.14 deleterious(0) probably_damaging(0.992) TCGA-MP-A4T7-01 17 7404339 7404339 C T POLR2A Silent p.H654H 0.10 TCGA-MP-A4T7-01 17 76171214 76171214 C T TK1 Missense_Mutation p.E144K 0.28 deleterious(0) probably_damaging(0.999) TCGA-MP-A4T7-01 17 8013540 8013540 T G ALOXE3 Missense_Mutation p.K524T 0.26 deleterious(0) probably_damaging(1) TCGA-MP-A4T7-01 18 34322723 34322723 C A FHOD3 Missense_Mutation p.D1086E 0.14 deleterious(0) benign(0.258) TCGA-MP-A4T7-01 19 10600417 10600417 C A KEAP1 Missense_Mutation p.G480W 0.28 deleterious(0) probably_damaging(1) TCGA-MP-A4T7-01 19 37853914 37853919 CACATT - HKR1 In_Frame_Del p.H407_S408del 0.11 TCGA-MP-A4T7-01 19 39421116 39421116 G A SARS2 Silent p.P87P 0.16 TCGA-MP-A4T7-01 19 41778106 41778106 G T HNRNPUL1 Nonsense_Mutation p.G180* 0.15 TCGA-MP-A4T7-01 19 47281994 47281994 G A SLC1A5 Silent p.N332N 0.17 TCGA-MP-A4T7-01 19 55143140 55143140 C A LILRB1 Missense_Mutation p.S87Y 0.21 tolerated(0.63) benign(0.006) TCGA-MP-A4T7-01 19 58724155 58724155 G T ZNF274 Silent p.V535V 0.22 TCGA-MP-A4T7-01 19 9451835 9451835 G T ZNF559 Missense_Mutation p.G73V 0.35 tolerated(0.53) probably_damaging(0.972) TCGA-MP-A4T7-01 1 151345156 151345156 G A SELENBP1 5'UTR 0.23 TCGA-MP-A4T7-01 1 152193403 152193403 G T HRNR Missense_Mutation p.H234Q 0.40 unknown(0) TCGA-MP-A4T7-01 1 158627359 158627359 G T SPTA1 Missense_Mutation p.L905M 0.09 tolerated(0.06) possibly_damaging(0.641) TCGA-MP-A4T7-01 1 159799710 159799710 C A SLAMF8 Nonsense_Mutation p.S32* 0.20 TCGA-MP-A4T7-01 1 160063082 160063082 C A IGSF8 Missense_Mutation p.R315L 0.12 tolerated(0.18) probably_damaging(0.994) TCGA-MP-A4T7-01 1 161790885 161790885 C G ATF6 Missense_Mutation p.P374R 0.17 deleterious(0.01) possibly_damaging(0.786) TCGA-MP-A4T7-01 1 162336934 162336934 C T RP11-565P22.6 Missense_Mutation p.H86Y 0.21 tolerated(1) benign(0.002) TCGA-MP-A4T7-01 1 171083346 171083346 A T FMO3 Missense_Mutation p.I343F 0.18 deleterious(0.03) possibly_damaging(0.905) TCGA-MP-A4T7-01 1 175067497 175067497 G C TNN Missense_Mutation p.D629H 0.24 deleterious(0.02) probably_damaging(0.948) TCGA-MP-A4T7-01 1 17597662 17597662 C A PADI3 Missense_Mutation p.R346S 0.35 deleterious(0) probably_damaging(0.946) TCGA-MP-A4T7-01 1 176526126 176526126 C A PAPPA2 Missense_Mutation p.P223H 0.13 deleterious(0.04) benign(0.007) TCGA-MP-A4T7-01 1 177001606 177001606 A C ASTN1 Missense_Mutation p.M284R 0.11 tolerated_low_confidence(0.07) benign(0.432) TCGA-MP-A4T7-01 1 212798865 212798865 C T FAM71A Nonsense_Mutation p.Q216* 0.20 TCGA-MP-A4T7-01 1 233134126 233134126 C A PCNXL2 Nonsense_Mutation p.G1888* 0.15 TCGA-MP-A4T7-01 1 248402466 248402466 C A OR2M4 Missense_Mutation p.P79H 0.18 deleterious(0) probably_damaging(0.986) TCGA-MP-A4T7-01 20 21492978 21492978 G A NKX2-2 Silent p.F135F 0.26 TCGA-MP-A4T7-01 20 3209205 3209205 C T SLC4A11 Missense_Mutation p.D824N 0.33 tolerated(0.26) possibly_damaging(0.736) TCGA-MP-A4T7-01 20 40877379 40877379 G T PTPRT Missense_Mutation p.L754I 0.11 tolerated(1) benign(0.002) TCGA-MP-A4T7-01 21 45819207 45819207 C T TRPM2 Silent p.D697D 0.15 TCGA-MP-A4T7-01 22 23040631 23040631 G A IGLV2-23 Missense_Mutation p.A27T 0.20 tolerated_low_confidence(0.06) benign(0.1) TCGA-MP-A4T7-01 22 23915773 23915773 C A IGLL1 Splice_Site p.X108_splice 0.09 TCGA-MP-A4T7-01 22 50714334 50714334 T A AL022328.1 Missense_Mutation p.L51Q 0.26 deleterious_low_confidence(0) unknown(0) TCGA-MP-A4T7-01 2 130951747 130951747 G T TUBA3E Missense_Mutation p.T223K 0.08 deleterious_low_confidence(0.02) benign(0.007) TCGA-MP-A4T7-01 2 160706611 160706611 T G LY75-CD302 Missense_Mutation p.L1010F 0.12 tolerated(0.1) probably_damaging(0.986) TCGA-MP-A4T7-01 2 163256864 163256864 C A KCNH7 Missense_Mutation p.G748W 0.10 deleterious(0) probably_damaging(0.998) TCGA-MP-A4T7-01 2 220471461 220471461 A T STK11IP Missense_Mutation p.M350L 0.24 tolerated(0.36) benign(0.001) TCGA-MP-A4T7-01 2 234590605 234590605 G T UGT1A7 Missense_Mutation p.G8C 0.31 deleterious(0.02) possibly_damaging(0.759) TCGA-MP-A4T7-01 2 39088695 39088695 C A DHX57 Missense_Mutation p.R286L 0.10 tolerated(0.3) benign(0.03) TCGA-MP-A4T7-01 2 73519483 73519483 G T EGR4 Missense_Mutation p.A291E 0.60 deleterious(0.04) probably_damaging(1) TCGA-MP-A4T7-01 2 89416880 89416880 G T IGKV1-17 Missense_Mutation p.P102T 0.07 deleterious(0.04) benign(0.417) TCGA-MP-A4T7-01 3 1371543 1371543 G T CNTN6 Nonsense_Mutation p.G430* 0.11 TCGA-MP-A4T7-01 3 142841203 142841203 G C CHST2 Missense_Mutation p.E515D 0.35 tolerated(0.22) benign(0.004) TCGA-MP-A4T7-01 3 14861278 14861278 G T FGD5 Missense_Mutation p.G234C 0.22 deleterious_low_confidence(0.03) benign(0.159) TCGA-MP-A4T7-01 3 148711957 148711957 C T GYG1 Silent p.N12N 0.11 TCGA-MP-A4T7-01 3 164777778 164777778 A G SI Missense_Mutation p.L353P 0.30 deleterious(0) probably_damaging(1) TCGA-MP-A4T7-01 3 186395211 186395211 G A HRG Missense_Mutation p.E373K 0.36 tolerated(0.2) benign(0) TCGA-MP-A4T7-01 3 192053249 192053249 G T FGF12 Silent p.L105L 0.24 TCGA-MP-A4T7-01 3 38592059 38592059 C A SCN5A Missense_Mutation p.G1935V 0.24 tolerated(0.11) benign(0.35) TCGA-MP-A4T7-01 3 71008387 71008387 C A FOXP1 3'UTR 0.10 TCGA-MP-A4T7-01 3 78701070 78701070 C A ROBO1 Missense_Mutation p.G875V 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-MP-A4T7-01 3 87027892 87027892 G T VGLL3 Missense_Mutation p.Q63K 0.07 tolerated(0.31) benign(0.058) TCGA-MP-A4T7-01 4 119665232 119665232 G C SEC24D Missense_Mutation p.L636V 0.21 tolerated(0.09) probably_damaging(0.999) TCGA-MP-A4T7-01 4 134073644 134073644 C T PCDH10 Silent p.S783S 0.27 TCGA-MP-A4T7-01 4 158257547 158257547 G C GRIA2 Missense_Mutation p.A498P 0.10 deleterious(0.02) probably_damaging(0.972) TCGA-MP-A4T7-01 4 164466813 164466813 A T MARCH1 Missense_Mutation p.V169E 0.21 deleterious(0) probably_damaging(0.917) TCGA-MP-A4T7-01 4 175897108 175897108 G A ADAM29 Silent p.T144T 0.11 TCGA-MP-A4T7-01 4 187628360 187628360 C A FAT1 Silent p.T874T 0.24 TCGA-MP-A4T7-01 4 30921781 30921781 C T PCDH7 Missense_Mutation p.R1061C 0.27 deleterious(0) possibly_damaging(0.899) TCGA-MP-A4T7-01 4 4269734 4269734 T C LYAR Missense_Mutation p.Y341C 0.13 deleterious(0) benign(0.146) TCGA-MP-A4T7-01 4 47163294 47163294 A C GABRB1 Missense_Mutation p.Q90P 0.25 deleterious(0) probably_damaging(1) TCGA-MP-A4T7-01 4 71201736 71201736 C T CABS1 Missense_Mutation p.A327V 0.17 tolerated(0.24) benign(0.032) TCGA-MP-A4T7-01 4 88901272 88901272 C A SPP1 Silent p.A56A 0.15 TCGA-MP-A4T7-01 5 113822775 113822775 G - KCNN2 Frame_Shift_Del p.E429Kfs*4 0.25 TCGA-MP-A4T7-01 5 138223196 138223196 G C CTNNA1 Missense_Mutation p.M387I 0.30 tolerated(0.48) benign(0.001) TCGA-MP-A4T7-01 5 140558944 140558944 G C PCDHB8 Silent p.S443S 0.06 TCGA-MP-A4T7-01 5 140627174 140627174 G T PCDHB15 Silent p.A676A 0.20 TCGA-MP-A4T7-01 5 140784690 140784690 T A PCDHGA9 Missense_Mutation p.L724Q 0.25 deleterious_low_confidence(0.04) benign(0.187) TCGA-MP-A4T7-01 5 141334914 141334914 G T PCDH12 Missense_Mutation p.P835T 0.28 tolerated(0.56) benign(0.021) TCGA-MP-A4T7-01 5 171482780 171482780 C A STK10 Nonsense_Mutation p.E780* 0.20 TCGA-MP-A4T7-01 5 45262144 45262144 G A HCN1 Missense_Mutation p.P851L 0.24 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-MP-A4T7-01 6 130031287 130031287 G A ARHGAP18 5'UTR 0.29 TCGA-MP-A4T7-01 6 130425702 130425702 C T L3MBTL3 Missense_Mutation p.S623F 0.21 tolerated(0.05) possibly_damaging(0.779) TCGA-MP-A4T7-01 6 29556028 29556028 C T OR2H2 Silent p.L103L 0.16 TCGA-MP-A4T7-01 6 36336760 36336760 C A ETV7 Missense_Mutation p.K251N 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-MP-A4T7-01 6 79671407 79671407 C A PHIP Missense_Mutation p.R1219M 0.15 deleterious(0) probably_damaging(0.998) TCGA-MP-A4T7-01 7 100682271 100682271 C T MUC17 Missense_Mutation p.T2525M 0.27 probably_damaging(0.99) TCGA-MP-A4T7-01 7 121653017 121653017 C A PTPRZ1 Missense_Mutation p.P1306Q 0.12 tolerated_low_confidence(0.09) benign(0.01) TCGA-MP-A4T7-01 7 147336349 147336349 G T CNTNAP2 Missense_Mutation p.E683D 0.15 deleterious(0.01) benign(0.179) TCGA-MP-A4T7-01 7 149505384 149505384 G T SSPO RNA 0.21 TCGA-MP-A4T7-01 7 150768258 150768258 G T SLC4A2 Missense_Mutation p.V617L 0.16 tolerated(0.17) benign(0.039) TCGA-MP-A4T7-01 8 133900507 133900507 C A TG Missense_Mutation p.L819I 0.24 tolerated(0.48) benign(0.011) TCGA-MP-A4T7-01 8 145638293 145638293 C A SLC39A4 Silent p.V555V 0.21 TCGA-MP-A4T7-01 8 20022587 20022587 A G SLC18A1 Missense_Mutation p.L297P 0.23 deleterious(0) probably_damaging(0.991) TCGA-MP-A4T7-01 8 38839176 38839176 G C HTRA4 Missense_Mutation p.G335A 0.27 deleterious(0.02) probably_damaging(1) TCGA-MP-A4T7-01 9 123924403 123924403 G T CNTRL Missense_Mutation p.Q1759H 0.35 probably_damaging(0.984) TCGA-MP-A4T7-01 9 125582702 125582702 C T PDCL Missense_Mutation p.D190N 0.25 tolerated(0.41) possibly_damaging(0.454) TCGA-MP-A4T7-01 9 134387478 134387478 C T POMT1 Missense_Mutation p.P368L 0.48 deleterious(0.01) probably_damaging(1) TCGA-MP-A4T7-01 9 136594980 136594980 C A SARDH Missense_Mutation p.W274C 0.20 deleterious(0) probably_damaging(0.992) TCGA-MP-A4T7-01 9 21367746 21367746 G T IFNA13 Silent p.I88I 0.30 TCGA-MP-A4T7-01 X 118147029 118147029 G T LONRF3 Missense_Mutation p.E613D 0.20 deleterious(0) probably_damaging(0.999) TCGA-MP-A4T7-01 X 129190043 129190043 G T BCORL1 Missense_Mutation p.V1690L 0.26 possibly_damaging(0.829) TCGA-MP-A4T7-01 X 13337312 13337312 G C ATXN3L Missense_Mutation p.R248G 0.28 deleterious(0.01) possibly_damaging(0.787) TCGA-MP-A4T7-01 X 135761737 135761737 G C ARHGEF6 Missense_Mutation p.P596R 0.18 deleterious(0) probably_damaging(0.996) TCGA-MP-A4T7-01 X 144903936 144903936 G T SLITRK2 5'UTR 0.11 TCGA-MP-A4T7-01 X 151869584 151869584 G T MAGEA6 Nonsense_Mutation p.E92* 0.20 TCGA-MP-A4T7-01 X 152031163 152031163 C A NSDHL Silent p.A146A 0.24 TCGA-MP-A4T7-01 X 18195792 18195792 C A BEND2 Missense_Mutation p.L509F 0.16 deleterious(0) probably_damaging(1) TCGA-MP-A4T7-01 X 23411312 23411312 C G PTCHD1 Nonsense_Mutation p.Y559* 0.23 TCGA-MP-A4T7-01 X 53616745 53616745 C A HUWE1 Missense_Mutation p.R1408L 0.33 benign(0.035) TCGA-MP-A4T7-01 X 57620350 57620350 G A ZXDB Silent p.L623L 0.18 TCGA-MP-A4T7-01 X 69640090 69640090 C A KIF4A Missense_Mutation p.S1225Y 0.22 deleterious_low_confidence(0) possibly_damaging(0.571) TCGA-MP-A4T7-01 X 70320970 70320970 C T FOXO4 Missense_Mutation p.P297L 0.19 tolerated(0.13) probably_damaging(0.974) TCGA-MP-A4T7-01 X 72797281 72797281 C G CHIC1 Missense_Mutation p.S112C 0.20 deleterious(0.04) probably_damaging(0.99) TCGA-MP-A4T7-01 X 75648300 75648300 A G MAGEE1 5'UTR 0.24 TCGA-MP-A4T8-01 10 106865212 106865212 C T SORCS3 Missense_Mutation p.P384L 0.29 tolerated(0.16) benign(0.224) TCGA-MP-A4T8-01 10 93753493 93753493 G T BTAF1 Missense_Mutation p.A1030S 0.36 deleterious(0.04) possibly_damaging(0.483) TCGA-MP-A4T8-01 11 113650978 113650978 C A CLDN25 Missense_Mutation p.P154H 0.19 deleterious(0) probably_damaging(0.999) TCGA-MP-A4T8-01 11 1155707 1155707 C A MUC5AC Missense_Mutation p.T132K 0.61 deleterious(0.04) possibly_damaging(0.526) TCGA-MP-A4T8-01 11 26552859 26552859 C A ANO3 Missense_Mutation p.P282H 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-MP-A4T8-01 11 47464341 47464341 G A RAPSN Missense_Mutation p.P186L 0.46 tolerated(0.57) probably_damaging(0.91) TCGA-MP-A4T8-01 11 55927228 55927228 C A OR8K5 Missense_Mutation p.C189F 0.63 deleterious_low_confidence(0.01) possibly_damaging(0.722) TCGA-MP-A4T8-01 11 60971003 60971003 G A PGA3 5'UTR 0.13 TCGA-MP-A4T8-01 11 63487517 63487517 G A RTN3 Missense_Mutation p.E515K 0.07 deleterious(0.03) benign(0.317) TCGA-MP-A4T8-01 11 74914052 74914052 C T SLCO2B1 Intron 0.14 TCGA-MP-A4T8-01 11 74914059 74914059 C T SLCO2B1 Intron 0.16 TCGA-MP-A4T8-01 11 74914075 74914075 C T SLCO2B1 Intron 0.14 TCGA-MP-A4T8-01 11 74914121 74914121 C T SLCO2B1 Intron 0.15 TCGA-MP-A4T8-01 12 101779470 101779470 G A UTP20 Silent p.E2722E 0.18 TCGA-MP-A4T8-01 12 13061511 13061512 - G GPRC5A Frame_Shift_Ins p.S110Cfs*42 0.33 TCGA-MP-A4T8-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.40 deleterious(0) benign(0.361) TCGA-MP-A4T8-01 12 44915859 44915859 C A NELL2 Missense_Mutation p.C750F 0.17 deleterious(0) probably_damaging(0.998) TCGA-MP-A4T8-01 12 52387839 52387839 T C ACVR1B Missense_Mutation p.L529P 0.11 deleterious(0) probably_damaging(1) TCGA-MP-A4T8-01 12 52387845 52387845 T G ACVR1B Missense_Mutation p.I531S 0.11 deleterious(0) probably_damaging(0.999) TCGA-MP-A4T8-01 12 52863675 52863675 C G KRT6C Splice_Site p.X402_splice 0.15 TCGA-MP-A4T8-01 12 7024938 7024938 C A ENO2 5'UTR 0.44 TCGA-MP-A4T8-01 12 8212563 8212563 G T C3AR1 Silent p.L73L 0.24 TCGA-MP-A4T8-01 12 96704897 96704897 T C CDK17 Missense_Mutation p.E159G 0.21 deleterious(0.02) benign(0.253) TCGA-MP-A4T8-01 13 101742240 101742240 C A NALCN Missense_Mutation p.G1116V 0.36 deleterious(0) probably_damaging(0.992) TCGA-MP-A4T8-01 13 114523877 114523877 G T GAS6 Missense_Mutation p.T666K 0.18 tolerated(0.33) probably_damaging(0.998) TCGA-MP-A4T8-01 13 32913737 32913737 T C BRCA2 Missense_Mutation p.Y1749H 0.58 tolerated(0.5) probably_damaging(0.919) TCGA-MP-A4T8-01 13 95055323 95055323 C A GPC6 Missense_Mutation p.P507H 0.28 tolerated(0.3) probably_damaging(0.928) TCGA-MP-A4T8-01 14 106452900 106452900 C T IGHV1-2 Missense_Mutation p.C41Y 0.17 deleterious(0.01) probably_damaging(0.967) TCGA-MP-A4T8-01 14 22616368 22616368 C A TRAV27 Missense_Mutation p.L37I 0.10 tolerated(0.23) benign(0.003) TCGA-MP-A4T8-01 14 53175517 53175517 G C PSMC6 Missense_Mutation p.V95L 0.22 deleterious(0) benign(0.444) TCGA-MP-A4T8-01 14 70714181 70714181 C A ADAM21P1 RNA 0.24 TCGA-MP-A4T8-01 14 94770745 94770745 G T SERPINA6 3'UTR 0.19 TCGA-MP-A4T8-01 15 25458823 25458823 C G SNORD115-24 RNA 0.36 TCGA-MP-A4T8-01 15 25616291 25616291 T G UBE3A Missense_Mutation p.I347L 0.28 tolerated(0.08) benign(0.411) TCGA-MP-A4T8-01 15 70960252 70960252 C A UACA Missense_Mutation p.S924I 0.19 deleterious(0) possibly_damaging(0.558) TCGA-MP-A4T8-01 15 78819900 78819904 GAGAA - HYKK Frame_Shift_Del p.R219Lfs*8 0.23 TCGA-MP-A4T8-01 16 2011189 2011191 TAC - NDUFB10 In_Frame_Del p.Y58del 0.12 TCGA-MP-A4T8-01 16 20384444 20384444 C T PDILT Missense_Mutation p.G228R 0.22 deleterious(0.02) probably_damaging(0.982) TCGA-MP-A4T8-01 16 31045556 31045556 A G STX4 Missense_Mutation p.I48V 0.47 tolerated(0.15) benign(0.035) TCGA-MP-A4T8-01 16 46710517 46710517 T C VPS35 Missense_Mutation p.I298V 0.15 tolerated(0.11) benign(0.173) TCGA-MP-A4T8-01 16 50745748 50745748 G T NOD2 Missense_Mutation p.R642S 0.10 tolerated(0.89) benign(0.011) TCGA-MP-A4T8-01 16 56906650 56906650 C A SLC12A3 Silent p.P349P 0.41 TCGA-MP-A4T8-01 16 630919 630919 C G PIGQ Missense_Mutation p.S493C 0.15 deleterious(0.03) possibly_damaging(0.864) TCGA-MP-A4T8-01 16 65022083 65022083 C A CDH11 Nonsense_Mutation p.E326* 0.20 TCGA-MP-A4T8-01 16 69349944 69349944 G A VPS4A Missense_Mutation p.E19K 0.24 tolerated(0.11) benign(0.188) TCGA-MP-A4T8-01 16 85121944 85121944 G A KIAA0513 3'UTR 0.09 TCGA-MP-A4T8-01 16 88767747 88767747 T C RNF166 Missense_Mutation p.K79E 0.43 tolerated(0.17) possibly_damaging(0.491) TCGA-MP-A4T8-01 17 10415206 10415206 T A MYH1 Missense_Mutation p.R456W 0.54 deleterious(0) probably_damaging(0.989) TCGA-MP-A4T8-01 17 43176875 43176875 G A NMT1 Silent p.L329L 0.51 TCGA-MP-A4T8-01 17 56356388 56356388 G C MPO Missense_Mutation p.P289R 0.50 tolerated(0.06) probably_damaging(0.959) TCGA-MP-A4T8-01 17 61912160 61912160 G C SMARCD2 Missense_Mutation p.P242A 0.21 tolerated(0.08) benign(0.01) TCGA-MP-A4T8-01 18 10677747 10677747 G T PIEZO2 Missense_Mutation p.P2580Q 0.45 deleterious(0.01) benign(0.044) TCGA-MP-A4T8-01 18 34320643 34320643 G A FHOD3 Missense_Mutation p.D1026N 0.15 deleterious(0) benign(0.06) TCGA-MP-A4T8-01 19 11917623 11917623 A T ZNF491 Silent p.S285S 0.28 TCGA-MP-A4T8-01 19 14854557 14854557 C A EMR2 Silent p.L741L 0.36 TCGA-MP-A4T8-01 19 15726455 15726455 G T AD000091.2 5'Flank 0.13 TCGA-MP-A4T8-01 19 17025272 17025272 C T CPAMD8 Missense_Mutation p.V1322M 0.24 deleterious(0) probably_damaging(0.998) TCGA-MP-A4T8-01 19 20307982 20307982 C T ZNF486 Nonsense_Mutation p.Q155* 0.25 TCGA-MP-A4T8-01 19 21299711 21299711 G A ZNF714 Missense_Mutation p.E81K 0.31 tolerated(0.23) benign(0.015) TCGA-MP-A4T8-01 19 41765594 41765594 A G AXL Missense_Mutation p.M824V 0.26 deleterious(0.03) probably_damaging(0.993) TCGA-MP-A4T8-01 19 43269763 43269763 T G PSG8 5'UTR 0.28 TCGA-MP-A4T8-01 19 43348663 43348663 T A PSG10P RNA 0.30 TCGA-MP-A4T8-01 19 51381894 51381894 G T KLK2 3'UTR 0.14 TCGA-MP-A4T8-01 19 53959272 53959272 G T ZNF761 RNA 0.04 TCGA-MP-A4T8-01 19 56244436 56244436 G T NLRP9 Missense_Mutation p.P254Q 0.23 tolerated(1) benign(0.005) TCGA-MP-A4T8-01 1 111495203 111495203 G A LRIF1 Silent p.A101A 0.23 TCGA-MP-A4T8-01 1 116310962 116310962 T C CASQ2 Silent p.Q67Q 0.26 TCGA-MP-A4T8-01 1 19633591 19633591 G ACC AKR7A2 Frame_Shift_Ins p.L232Vfs*3 0.27 TCGA-MP-A4T8-01 1 196952085 196952085 C T CFHR5 Silent p.S43S 0.19 TCGA-MP-A4T8-01 1 204924040 204924040 C T NFASC Missense_Mutation p.P166S 0.16 tolerated(0.07) probably_damaging(0.968) TCGA-MP-A4T8-01 1 205038964 205038964 C T CNTN2 Missense_Mutation p.R736W 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-MP-A4T8-01 1 34006136 34006136 G A CSMD2 Missense_Mutation p.P3063L 0.32 deleterious(0.02) probably_damaging(1) TCGA-MP-A4T8-01 1 78001629 78001629 A T AK5 Missense_Mutation p.D509V 0.26 deleterious(0) benign(0.038) TCGA-MP-A4T8-01 20 23028868 23028868 C T THBD Missense_Mutation p.C425Y 0.36 deleterious(0) probably_damaging(1) TCGA-MP-A4T8-01 20 23346382 23346382 G A GZF1 Missense_Mutation p.M454I 0.18 tolerated(0.38) benign(0.023) TCGA-MP-A4T8-01 20 30584535 30584535 A T XKR7 Missense_Mutation p.M339L 0.42 deleterious(0) probably_damaging(0.997) TCGA-MP-A4T8-01 20 33509133 33509133 G T ACSS2 Missense_Mutation p.K439N 0.28 tolerated(0.05) possibly_damaging(0.84) TCGA-MP-A4T8-01 20 37580193 37580193 C T FAM83D Missense_Mutation p.T293M 0.36 deleterious(0.01) probably_damaging(0.962) TCGA-MP-A4T8-01 20 43056995 43056995 C A HNF4A Missense_Mutation p.H384N 0.23 tolerated(0.21) probably_damaging(0.985) TCGA-MP-A4T8-01 21 33340621 33340621 C T HUNK Nonsense_Mutation p.Q312* 0.17 TCGA-MP-A4T8-01 22 18324716 18324716 G T MICAL3 Silent p.I891I 0.75 TCGA-MP-A4T8-01 22 38038480 38038480 G A SH3BP1 Intron 0.25 TCGA-MP-A4T8-01 2 107007384 107007384 T A PLGLA RNA 0.41 TCGA-MP-A4T8-01 2 124999891 124999891 A T CNTNAP5 Missense_Mutation p.D101V 0.14 deleterious(0) probably_damaging(0.999) TCGA-MP-A4T8-01 2 141771172 141771172 C T LRP1B Missense_Mutation p.R778K 0.17 benign(0.067) TCGA-MP-A4T8-01 2 162804198 162804198 C A SLC4A10 Silent p.T742T 0.36 TCGA-MP-A4T8-01 2 170411659 170411659 C - FASTKD1 Frame_Shift_Del p.A397Rfs*11 0.20 TCGA-MP-A4T8-01 2 188223813 188223813 C A CALCRL Missense_Mutation p.G296C 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-MP-A4T8-01 2 220355624 220355624 A C SPEG Missense_Mutation p.N3111H 0.14 possibly_damaging(0.847) TCGA-MP-A4T8-01 2 240985173 240985173 G A OR6B3 Missense_Mutation p.S106F 0.33 tolerated(0.13) possibly_damaging(0.872) TCGA-MP-A4T8-01 2 242755751 242755751 G A NEU4 Missense_Mutation p.V37M 0.16 deleterious(0) probably_damaging(0.994) TCGA-MP-A4T8-01 2 24930250 24930250 G T NCOA1 Missense_Mutation p.L637F 0.43 deleterious(0) probably_damaging(1) TCGA-MP-A4T8-01 2 3597991 3597991 C T RNASEH1 Missense_Mutation p.G161S 0.05 deleterious(0) probably_damaging(0.995) TCGA-MP-A4T8-01 2 89416963 89416963 G T IGKV1-17 Missense_Mutation p.S74Y 0.50 deleterious(0) benign(0.399) TCGA-MP-A4T8-01 3 14799125 14799125 C A C3orf20 Missense_Mutation p.L730M 0.46 tolerated(0.17) possibly_damaging(0.527) TCGA-MP-A4T8-01 3 36875410 36875410 C A TRANK1 Missense_Mutation p.K1844N 0.36 deleterious(0) possibly_damaging(0.652) TCGA-MP-A4T8-01 3 36875411 36875411 C T TRANK1 Splice_Site p.X1844_splice 0.36 TCGA-MP-A4T8-01 3 49698498 49698498 G T BSN Nonsense_Mutation p.G3074* 0.28 TCGA-MP-A4T8-01 3 52425531 52425531 A T DNAH1 Missense_Mutation p.M3322L 0.30 benign(0.002) TCGA-MP-A4T8-01 3 7620594 7620594 C A GRM7 Nonsense_Mutation p.C667* 0.23 TCGA-MP-A4T8-01 4 113436340 113436340 G T NEUROG2 Silent p.R98R 0.25 TCGA-MP-A4T8-01 4 153691534 153691535 TT - TIGD4 Frame_Shift_Del p.K208Vfs*45 0.30 TCGA-MP-A4T8-01 4 3129109 3129109 G A HTT Silent p.A507A 0.35 TCGA-MP-A4T8-01 4 7012481 7012481 G A TBC1D14 Missense_Mutation p.M540I 0.31 deleterious(0.02) probably_damaging(0.938) TCGA-MP-A4T8-01 4 7012482 7012482 G T TBC1D14 Missense_Mutation p.A541S 0.31 tolerated(0.12) probably_damaging(0.989) TCGA-MP-A4T8-01 4 73990933 73990933 G T ANKRD17 Missense_Mutation p.H1111N 0.35 benign(0.112) TCGA-MP-A4T8-01 4 8242469 8242469 C T SH3TC1 Silent p.A1266A 0.05 TCGA-MP-A4T8-01 5 137034054 137034054 G A KLHL3 Silent p.D95D 0.32 TCGA-MP-A4T8-01 5 140725148 140725148 G T PCDHGA3 Silent p.A516A 0.33 TCGA-MP-A4T8-01 5 140890726 140890743 AAGGAGAAGAAGTAACAT - PCDHGB6 Missense_Mutation 0.27 TCGA-MP-A4T8-01 5 145610329 145610329 A G RBM27 Silent p.A233A 0.29 TCGA-MP-A4T8-01 5 160721085 160721085 G C GABRB2 3'UTR 0.28 TCGA-MP-A4T8-01 5 176318132 176318132 C T HK3 Nonsense_Mutation p.W107* 0.20 TCGA-MP-A4T8-01 5 41149524 41149524 G T C6 Silent p.P814P 0.21 TCGA-MP-A4T8-01 5 68902954 68902954 G T RP11-848G14.2 RNA 0.15 TCGA-MP-A4T8-01 6 13615826 13615826 A T NOL7 Missense_Mutation p.E79V 0.38 tolerated(0.06) benign(0.242) TCGA-MP-A4T8-01 6 29976122 29976122 A G ZNRD1-AS1 Intron 0.58 TCGA-MP-A4T8-01 6 32138254 32138254 C A AGPAT1 Missense_Mutation p.G153V 0.24 tolerated(0.1) benign(0.166) TCGA-MP-A4T8-01 6 70070791 70070791 C A BAI3 Missense_Mutation p.A1209E 0.44 deleterious(0.05) possibly_damaging(0.778) TCGA-MP-A4T8-01 6 76385162 76385162 T G SENP6 Missense_Mutation p.D468E 0.17 tolerated(0.12) benign(0.002) TCGA-MP-A4T8-01 6 85446362 85446362 A G TBX18 3'UTR 0.10 TCGA-MP-A4T8-01 7 103368622 103368622 T C RELN Missense_Mutation p.Q230R 0.09 tolerated(0.18) benign(0.011) TCGA-MP-A4T8-01 7 142045372 142045372 A G TRBV4-2 Missense_Mutation p.R4G 0.07 tolerated(0.21) unknown(0) TCGA-MP-A4T8-01 7 142168408 142168408 C A TRBV5-4 Silent p.S105S 0.24 TCGA-MP-A4T8-01 7 147183026 147183026 G T CNTNAP2 Splice_Site p.X557_splice 0.29 TCGA-MP-A4T8-01 7 150164040 150164040 A G GIMAP8 Missense_Mutation p.H85R 0.24 tolerated(0.6) benign(0.001) TCGA-MP-A4T8-01 7 1513272 1513272 T C INTS1 Missense_Mutation p.I1963V 0.40 tolerated(0.47) benign(0.002) TCGA-MP-A4T8-01 7 15652113 15652113 G A MEOX2 Silent p.L272L 0.31 TCGA-MP-A4T8-01 7 158672379 158672379 A T WDR60 Missense_Mutation p.Q193L 0.34 deleterious(0.03) benign(0.007) TCGA-MP-A4T8-01 7 18684407 18684407 C A HDAC9 Silent p.S342S 0.22 TCGA-MP-A4T8-01 7 21908534 21908534 A C DNAH11 Missense_Mutation p.L3971F 0.36 probably_damaging(0.999) TCGA-MP-A4T8-01 7 5336798 5336798 A G SLC29A4 Missense_Mutation p.H284R 0.35 tolerated(0.17) possibly_damaging(0.904) TCGA-MP-A4T8-01 7 6838048 6838048 G T RSPH10B2 Silent p.V829V 0.44 TCGA-MP-A4T8-01 7 72658712 72658712 C G GTF2IRD2P1 RNA 0.36 TCGA-MP-A4T8-01 7 81799909 81799909 G T CACNA2D1 Missense_Mutation p.A104E 0.34 deleterious(0) probably_damaging(0.994) TCGA-MP-A4T8-01 8 139163766 139163766 A T FAM135B Silent p.T984T 0.38 TCGA-MP-A4T8-01 8 144669022 144669022 G A EEF1D Silent p.N364N 0.35 TCGA-MP-A4T8-01 8 17500265 17500265 T C PDGFRL Silent p.N361N 0.19 TCGA-MP-A4T8-01 8 30702133 30702133 C T TEX15 Silent p.A1467A 0.25 TCGA-MP-A4T8-01 8 3165232 3165232 G T CSMD1 Missense_Mutation p.P1312Q 0.17 benign(0.034) TCGA-MP-A4T8-01 8 36664947 36664947 T C KCNU1 Missense_Mutation p.I212T 0.19 deleterious(0) possibly_damaging(0.902) TCGA-MP-A4T8-01 8 73848883 73848883 G A KCNB2 Silent p.E431E 0.27 TCGA-MP-A4T8-01 8 90993642 90993642 C A NBN Missense_Mutation p.G94V 0.32 deleterious(0) probably_damaging(0.989) TCGA-MP-A4T8-01 8 92083505 92083505 T C OTUD6B Silent p.T104T 0.63 TCGA-MP-A4T8-01 9 111625066 111625066 G A ACTL7A Missense_Mutation p.R155Q 0.12 tolerated(0.31) benign(0.003) TCGA-MP-A4T8-01 9 119858331 119858331 C T ASTN2 Missense_Mutation p.R372H 0.28 deleterious(0.01) unknown(0) TCGA-MP-A4T8-01 9 5080377 5080377 A T JAK2 Missense_Mutation p.Q760H 0.47 deleterious(0.03) possibly_damaging(0.516) TCGA-MP-A4T8-01 9 5361759 5361759 C A PLGRKT Nonsense_Mutation p.G71* 0.12 TCGA-MP-A4T8-01 9 72006534 72006534 G T FAM189A2 Missense_Mutation p.Q389H 0.12 deleterious(0.03) benign(0.062) TCGA-MP-A4T8-01 9 75531945 75531945 A G ALDH1A1 Missense_Mutation p.I309T 0.46 tolerated(1) benign(0.374) TCGA-MP-A4T8-01 9 78910311 78910311 G C PCSK5 Missense_Mutation p.E1102D 0.20 tolerated(0.37) benign(0.051) TCGA-MP-A4T8-01 9 8460570 8460570 T C PTPRD Missense_Mutation p.K1239R 0.27 tolerated(0.51) benign(0.082) TCGA-MP-A4T8-01 X 32662374 32662374 C A DMD Missense_Mutation p.L402F 0.74 probably_damaging(0.943) TCGA-MP-A4T8-01 X 54949475 54949475 G T TRO Missense_Mutation p.L170F 0.73 deleterious(0) unknown(0) TCGA-MP-A4T8-01 X 54951138 54951138 C A TRO Missense_Mutation p.D459E 0.64 deleterious(0) unknown(0) TCGA-MP-A4T8-01 X 5821806 5821806 C A NLGN4X Missense_Mutation p.G305C 0.71 deleterious(0) probably_damaging(0.999) TCGA-MP-A4T9-01 11 71725388 71725388 T A NUMA1 Missense_Mutation p.H1054L 0.05 benign(0.005) TCGA-MP-A4T9-01 12 69230479 69230479 G T MDM2 Missense_Mutation p.G290W 0.05 deleterious(0.01) possibly_damaging(0.858) TCGA-MP-A4T9-01 12 7842942 7842942 A G GDF3 Silent p.D209D 0.11 TCGA-MP-A4T9-01 14 20528290 20528290 G T OR4L1 Silent p.V29V 0.04 TCGA-MP-A4T9-01 14 24784977 24785003 GTGGAGTATCCTGAAAAGGATGCAGAA - LTB4R In_Frame_Del p.W41_K49del 0.10 TCGA-MP-A4T9-01 14 77917601 77917601 C T VIPAS39 Missense_Mutation p.R91Q 0.06 tolerated(0.55) benign(0.36) TCGA-MP-A4T9-01 14 89128042 89128042 C A EML5 Missense_Mutation p.G1211W 0.08 deleterious(0) probably_damaging(1) TCGA-MP-A4T9-01 16 20337679 20337679 C T GP2 Silent p.Q25Q 0.14 TCGA-MP-A4T9-01 16 28497916 28497916 G A CLN3 Silent p.L172L 0.46 TCGA-MP-A4T9-01 16 30391351 30391351 G T SEPT1 Silent p.R193R 0.12 TCGA-MP-A4T9-01 16 66967955 66967955 T A FAM96B Missense_Mutation p.I53F 0.13 deleterious(0) probably_damaging(0.996) TCGA-MP-A4T9-01 16 9858060 9858060 C G GRIN2A Missense_Mutation p.R1114T 0.05 tolerated(0.2) possibly_damaging(0.472) TCGA-MP-A4T9-01 17 38510648 38510648 G T RARA Missense_Mutation p.G301V 0.09 deleterious(0.02) probably_damaging(1) TCGA-MP-A4T9-01 17 7576853 7576853 C T TP53 Silent p.Q331Q 0.15 TCGA-MP-A4T9-01 18 56585912 56585912 G T ZNF532 Silent p.P131P 0.08 TCGA-MP-A4T9-01 19 44470451 44470451 G C ZNF221 Missense_Mutation p.R266T 0.04 deleterious(0.04) probably_damaging(0.963) TCGA-MP-A4T9-01 19 48807229 48807229 C A CCDC114 Silent p.L241L 0.12 TCGA-MP-A4T9-01 19 56569755 56569755 C T NLRP5 Missense_Mutation p.T1150M 0.09 tolerated(0.1) benign(0.11) TCGA-MP-A4T9-01 1 108681704 108681704 C A SLC25A24 Missense_Mutation p.V409L 0.12 tolerated(0.07) benign(0.075) TCGA-MP-A4T9-01 1 220805632 220805632 C T MARK1 Missense_Mutation p.L367F 0.05 deleterious(0) probably_damaging(1) TCGA-MP-A4T9-01 1 85718325 85718325 T C C1orf52 Missense_Mutation p.K179R 0.11 tolerated(0.07) benign(0.011) TCGA-MP-A4T9-01 20 47587681 47587681 G A ARFGEF2 Silent p.V405V 0.11 TCGA-MP-A4T9-01 21 47851912 47851912 C T PCNT Missense_Mutation p.S2845L 0.08 benign(0.004) TCGA-MP-A4T9-01 22 32015685 32015685 C A PISD Silent p.V347V 0.08 TCGA-MP-A4T9-01 2 15608557 15608557 C T NBAS Missense_Mutation p.G609D 0.11 deleterious(0) probably_damaging(0.959) TCGA-MP-A4T9-01 2 159537274 159537274 G A PKP4 3'UTR 0.07 TCGA-MP-A4T9-01 2 196729175 196729175 G C DNAH7 Missense_Mutation p.Q2402E 0.05 deleterious(0) probably_damaging(0.951) TCGA-MP-A4T9-01 2 96933137 96933137 G T CIAO1 Missense_Mutation p.G73V 0.17 deleterious(0) probably_damaging(1) TCGA-MP-A4T9-01 3 167512516 167512516 T A SERPINI1 Missense_Mutation p.V262D 0.09 deleterious(0) possibly_damaging(0.845) TCGA-MP-A4T9-01 4 114275390 114275390 G A ANK2 Silent p.S1872S 0.10 TCGA-MP-A4T9-01 4 129776952 129776952 G A JADE1 Silent p.E288E 0.08 TCGA-MP-A4T9-01 4 1961398 1961398 C T WHSC1 Silent p.Y1062Y 0.08 TCGA-MP-A4T9-01 4 57514834 57514834 G C HOPX 3'UTR 0.08 TCGA-MP-A4T9-01 4 87968671 87968671 C T AFF1 Silent p.T328T 0.08 TCGA-MP-A4T9-01 5 140772467 140772467 A G PCDHGA8 Silent p.G29G 0.07 TCGA-MP-A4T9-01 5 150029662 150029662 C T SYNPO Missense_Mutation p.P853S 0.06 tolerated(0.18) benign(0.167) TCGA-MP-A4T9-01 6 122753222 122753222 A G HSF2 Missense_Mutation p.S490G 0.19 tolerated(0.29) benign(0.001) TCGA-MP-A4T9-01 6 50805757 50805757 G A TFAP2B Silent p.A297A 0.13 TCGA-MP-A4T9-01 7 148951187 148951187 G C ZNF212 Missense_Mutation p.C390S 0.13 tolerated(0.34) benign(0.15) TCGA-MP-A4T9-01 7 49951718 49951718 G C VWC2 Missense_Mutation p.E305D 0.07 tolerated(0.24) probably_damaging(0.978) TCGA-MP-A4T9-01 7 55259515 55259515 T G EGFR Missense_Mutation p.L858R 0.28 deleterious(0) probably_damaging(1) TCGA-MP-A4T9-01 7 96651595 96651595 G A DLX5 Nonsense_Mutation p.Q148* 0.06 TCGA-MP-A4T9-01 X 129519184 129519184 G T GPR119 Missense_Mutation p.L80M 0.09 tolerated(0.09) possibly_damaging(0.861) TCGA-MP-A4T9-01 X 134654786 134654786 T - DDX26B 5'UTR 0.13 TCGA-MP-A4T9-01 X 135427689 135427689 C A GPR112 Nonsense_Mutation p.Y608* 0.08 TCGA-MP-A4T9-01 X 135579988 135579988 C T HTATSF1 Missense_Mutation p.P49S 0.06 deleterious(0.03) benign(0.085) TCGA-MP-A4T9-01 X 1475147 1475147 G T IL3RA Missense_Mutation p.C217F 0.06 deleterious(0) probably_damaging(0.994) TCGA-MP-A4T9-01 X 48896748 48896748 C A TFE3 Missense_Mutation p.A140S 0.20 tolerated(0.45) unknown(0) TCGA-MP-A4TA-01 10 102058413 102058413 G A PKD2L1 Missense_Mutation p.H213Y 0.23 tolerated(0.26) benign(0.191) TCGA-MP-A4TA-01 10 106160477 106160477 C T CCDC147 Missense_Mutation p.R619W 0.05 deleterious(0) probably_damaging(0.997) TCGA-MP-A4TA-01 10 106163575 106163575 G A CCDC147 Missense_Mutation p.V710M 0.21 deleterious(0) benign(0.258) TCGA-MP-A4TA-01 10 111642316 111642316 C A XPNPEP1 Missense_Mutation p.R305S 0.32 tolerated(0.85) benign(0.001) TCGA-MP-A4TA-01 10 112335124 112335124 G T SMC3 Missense_Mutation p.S54I 0.10 deleterious(0) possibly_damaging(0.593) TCGA-MP-A4TA-01 10 118138884 118138884 G T CCDC172 3'UTR 0.16 TCGA-MP-A4TA-01 10 119044981 119044981 A T PDZD8 Silent p.G421G 0.13 TCGA-MP-A4TA-01 10 125426214 125426214 G T GPR26 Missense_Mutation p.M97I 0.38 tolerated(0.13) benign(0.349) TCGA-MP-A4TA-01 10 127726893 127726893 G T ADAM12 Missense_Mutation p.R759S 0.12 tolerated(1) benign(0.002) TCGA-MP-A4TA-01 10 129903542 129903542 C A MKI67 Missense_Mutation p.A2188S 0.15 deleterious(0.01) possibly_damaging(0.883) TCGA-MP-A4TA-01 10 134628380 134628380 T C TTC40 Missense_Mutation p.K2386E 0.05 deleterious(0.04) benign(0.346) TCGA-MP-A4TA-01 10 18155512 18155512 C - MRC1 Frame_Shift_Del p.M603* 0.13 TCGA-MP-A4TA-01 10 18250567 18250567 A G SLC39A12 Missense_Mutation p.R107G 0.10 tolerated(0.29) benign(0.001) TCGA-MP-A4TA-01 10 27324282 27324282 C G ANKRD26 Missense_Mutation p.A1033P 0.08 deleterious(0.01) probably_damaging(0.921) TCGA-MP-A4TA-01 10 29891191 29891191 A T SVIL Intron 0.10 TCGA-MP-A4TA-01 10 47929868 47929868 C G FAM21B Missense_Mutation p.P617A 0.28 deleterious(0.02) probably_damaging(0.981) TCGA-MP-A4TA-01 10 50531523 50531523 G T C10orf71 Missense_Mutation p.L311F 0.09 tolerated(0.16) possibly_damaging(0.897) TCGA-MP-A4TA-01 10 61840373 61840373 C A ANK3 Nonsense_Mutation p.E1452* 0.11 TCGA-MP-A4TA-01 10 68688196 68688196 T C LRRTM3 Missense_Mutation p.S508P 0.12 deleterious(0.03) probably_damaging(0.979) TCGA-MP-A4TA-01 10 75672001 75672001 A G C10orf55 Translation_Start_Site p.M1? 0.15 deleterious_low_confidence(0) benign(0.092) TCGA-MP-A4TA-01 10 79737343 79737343 C A POLR3A Nonsense_Mutation p.G1356* 0.16 TCGA-MP-A4TA-01 10 8055777 8055777 C T TAF3 Silent p.D884D 0.06 TCGA-MP-A4TA-01 10 86014178 86014178 G T RGR Silent p.L207L 0.14 TCGA-MP-A4TA-01 10 90521183 90521183 A T LIPN Silent p.T7T 0.14 TCGA-MP-A4TA-01 10 90987961 90987961 A C LIPA Missense_Mutation p.F142V 0.15 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TA-01 10 93754312 93754312 A G BTAF1 Missense_Mutation p.K1074E 0.12 tolerated(0.76) benign(0.001) TCGA-MP-A4TA-01 11 111745877 111745877 T A FDXACB1 Missense_Mutation p.K548N 0.12 tolerated(0.06) benign(0.271) TCGA-MP-A4TA-01 11 117314753 117314753 A T DSCAML1 Silent p.A1297A 0.12 TCGA-MP-A4TA-01 11 120702730 120702730 C A GRIK4 Silent p.I227I 0.19 TCGA-MP-A4TA-01 11 1215368 1215368 A C MUC5AC RNA 0.09 TCGA-MP-A4TA-01 11 12379950 12379950 G A MICALCL Missense_Mutation p.R671H 0.15 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TA-01 11 123908878 123908878 C A OR10G7 Silent p.T277T 0.13 TCGA-MP-A4TA-01 11 125499162 125499162 A T CHEK1 Nonsense_Mutation p.R109* 0.14 TCGA-MP-A4TA-01 11 126143255 126143255 C T FOXRED1 Missense_Mutation p.P148S 0.11 tolerated(0.07) benign(0.439) TCGA-MP-A4TA-01 11 128710111 128710111 C T KCNJ1 Missense_Mutation p.V29I 0.06 tolerated(0.24) benign(0) TCGA-MP-A4TA-01 11 18330573 18330573 G A HPS5 Silent p.S177S 0.08 TCGA-MP-A4TA-01 11 22833489 22833489 C A GAS2 Missense_Mutation p.T290N 0.18 tolerated(0.59) benign(0) TCGA-MP-A4TA-01 11 32635143 32635143 G A CCDC73 Silent p.P907P 0.12 TCGA-MP-A4TA-01 11 3424170 3424170 G T TSSC2 RNA 0.16 TCGA-MP-A4TA-01 11 35453843 35453843 G C PAMR1 3'UTR 0.10 TCGA-MP-A4TA-01 11 43603032 43603032 C A MIR129-2 RNA 0.18 TCGA-MP-A4TA-01 11 47317068 47317068 A T MADD Missense_Mutation p.I1180F 0.13 tolerated(0.64) benign(0.025) TCGA-MP-A4TA-01 11 48238820 48238820 C A OR4B1 Missense_Mutation p.H153Q 0.10 deleterious(0) probably_damaging(0.962) TCGA-MP-A4TA-01 11 48267490 48267490 T A OR4X2 Missense_Mutation p.Y279N 0.16 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TA-01 11 48346775 48346775 G T OR4C3 Missense_Mutation p.D95Y 0.06 deleterious(0) probably_damaging(0.995) TCGA-MP-A4TA-01 11 49197488 49197488 T A FOLH1 Silent p.P314P 0.15 TCGA-MP-A4TA-01 11 51411838 51411838 G T OR4A5 Nonsense_Mutation p.C186* 0.09 TCGA-MP-A4TA-01 11 5153015 5153015 G T OR52A5 Silent p.V286V 0.19 TCGA-MP-A4TA-01 11 5172960 5172960 G T OR52A1 Missense_Mutation p.L214I 0.15 tolerated(1) benign(0.012) TCGA-MP-A4TA-01 11 5291151 5291151 G A HBE1 5'UTR 0.09 TCGA-MP-A4TA-01 11 540679 540679 A G LRRC56 5'UTR 0.11 TCGA-MP-A4TA-01 11 5474828 5474828 T A OR51I2 Missense_Mutation p.V37E 0.16 deleterious(0) benign(0.138) TCGA-MP-A4TA-01 11 55135590 55135590 C T OR4A15 Silent p.I77I 0.15 TCGA-MP-A4TA-01 11 5528786 5528786 C A UBQLN3 3'UTR 0.10 TCGA-MP-A4TA-01 11 55541283 55541283 C A OR5D13 Missense_Mutation p.R124S 0.14 deleterious(0) possibly_damaging(0.575) TCGA-MP-A4TA-01 11 55587189 55587189 C A OR5D18 Silent p.L28L 0.20 TCGA-MP-A4TA-01 11 55606337 55606337 A G OR5D16 Missense_Mutation p.Y37C 0.15 deleterious(0) probably_damaging(1) TCGA-MP-A4TA-01 11 55658655 55658655 G C TRIM51 Silent p.L302L 0.16 TCGA-MP-A4TA-01 11 56020602 56020602 A G OR5T3 Silent p.T309T 0.18 TCGA-MP-A4TA-01 11 56431310 56431310 C A OR5AR1 Missense_Mutation p.T50K 0.13 tolerated(0.38) benign(0.009) TCGA-MP-A4TA-01 11 5731007 5731007 G T TRIM22 3'UTR 0.12 TCGA-MP-A4TA-01 11 5757857 5757857 T A OR56B1 Silent p.S37S 0.11 TCGA-MP-A4TA-01 11 59282831 59282831 G T OR4D9 Missense_Mutation p.W149L 0.19 deleterious(0) possibly_damaging(0.558) TCGA-MP-A4TA-01 11 59623483 59623483 G T TCN1 Missense_Mutation p.Q266K 0.15 tolerated(0.27) benign(0.091) TCGA-MP-A4TA-01 11 59814572 59814572 G T OOSP2 3'UTR 0.17 TCGA-MP-A4TA-01 11 6007848 6007848 C A OR52L1 Missense_Mutation p.V105F 0.31 tolerated(1) benign(0.003) TCGA-MP-A4TA-01 11 61541455 61541455 C A MYRF Missense_Mutation p.R378S 0.11 tolerated(0.05) possibly_damaging(0.498) TCGA-MP-A4TA-01 11 62009745 62009745 T A SCGB1D2 5'UTR 0.24 TCGA-MP-A4TA-01 11 62389348 62389348 C A B3GAT3 Silent p.L24L 0.30 TCGA-MP-A4TA-01 11 62568824 62568824 T A NXF1 Missense_Mutation p.I259F 0.17 deleterious(0) probably_damaging(0.937) TCGA-MP-A4TA-01 11 65422484 65422484 G C RELA Intron 0.25 TCGA-MP-A4TA-01 11 72289976 72289976 G T PDE2A Missense_Mutation p.Q812K 0.22 deleterious(0.01) probably_damaging(0.964) TCGA-MP-A4TA-01 11 73022702 73022702 A G ARHGEF17 Missense_Mutation p.T1007A 0.12 deleterious_low_confidence(0) possibly_damaging(0.635) TCGA-MP-A4TA-01 11 8190567 8190567 C A RIC3 5'Flank 0.21 TCGA-MP-A4TA-01 11 8190568 8190568 C A RIC3 5'Flank 0.21 TCGA-MP-A4TA-01 11 82693306 82693306 G A RAB30 Silent p.I171I 0.14 TCGA-MP-A4TA-01 11 85606379 85606379 C A CCDC83 Silent p.I185I 0.17 TCGA-MP-A4TA-01 11 92531081 92531081 G C FAT3 Missense_Mutation p.M1634I 0.16 benign(0.003) TCGA-MP-A4TA-01 12 129467801 129467801 A T GLT1D1 3'UTR 0.29 TCGA-MP-A4TA-01 12 13906740 13906740 G T GRIN2B Missense_Mutation p.T174N 0.13 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TA-01 12 15262139 15262139 G T RERG Missense_Mutation p.R169S 0.24 deleterious(0) possibly_damaging(0.687) TCGA-MP-A4TA-01 12 18854481 18854481 G C PLCZ1 Missense_Mutation p.T324R 0.29 tolerated(0.44) benign(0.002) TCGA-MP-A4TA-01 12 1967775 1967775 T C CACNA2D4 Missense_Mutation p.Y659C 0.12 deleterious(0) possibly_damaging(0.664) TCGA-MP-A4TA-01 12 21608979 21608979 G A PYROXD1 Missense_Mutation p.A234T 0.15 deleterious(0) probably_damaging(0.987) TCGA-MP-A4TA-01 12 28603157 28603157 G T CCDC91 Missense_Mutation p.A276S 0.14 tolerated(0.09) possibly_damaging(0.618) TCGA-MP-A4TA-01 12 4736530 4736530 G C AKAP3 Missense_Mutation p.P513R 0.15 tolerated(0.83) benign(0.446) TCGA-MP-A4TA-01 12 48369267 48369267 C T COL2A1 Missense_Mutation p.R1240Q 0.18 unknown(0) TCGA-MP-A4TA-01 12 48383582 48383582 G T COL2A1 Silent p.R344R 0.15 TCGA-MP-A4TA-01 12 4855345 4855345 G T GALNT8 Missense_Mutation p.R365M 0.12 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TA-01 12 50598413 50598413 G T LIMA1 Silent p.L262L 0.27 TCGA-MP-A4TA-01 12 52370271 52370271 G - ACVR1B Frame_Shift_Del p.E165Kfs*69 0.15 TCGA-MP-A4TA-01 12 52565150 52565150 G A KRT80 3'UTR 0.24 TCGA-MP-A4TA-01 12 58001202 58001202 G T DTX3 Nonsense_Mutation p.E186* 0.18 TCGA-MP-A4TA-01 12 65462552 65462552 C A WIF1 Missense_Mutation p.C177F 0.32 deleterious(0) probably_damaging(0.979) TCGA-MP-A4TA-01 12 7656274 7656274 T G CD163 Silent p.R5R 0.15 TCGA-MP-A4TA-01 12 81648674 81648674 C T ACSS3 Silent p.H678H 0.20 TCGA-MP-A4TA-01 13 101735485 101735485 G T NALCN Silent p.I1216I 0.22 TCGA-MP-A4TA-01 13 113158417 113158417 G C TUBGCP3 Missense_Mutation p.H746D 0.18 tolerated(0.27) benign(0.023) TCGA-MP-A4TA-01 13 20763553 20763553 C A GJB2 Silent p.L56L 0.16 TCGA-MP-A4TA-01 13 32759186 32759186 A T FRY Missense_Mutation p.M1074L 0.21 tolerated(0.71) benign(0.001) TCGA-MP-A4TA-01 13 36046592 36046592 G T NBEA Missense_Mutation p.K2168N 0.13 tolerated(0.08) benign(0.037) TCGA-MP-A4TA-01 13 52439616 52439616 C T CCDC70 Silent p.P34P 0.24 TCGA-MP-A4TA-01 13 58298772 58298772 G C PCDH17 Missense_Mutation p.D942H 0.19 deleterious(0) possibly_damaging(0.873) TCGA-MP-A4TA-01 14 104028348 104028348 C G BAG5 5'UTR 0.08 TCGA-MP-A4TA-01 14 106641567 106641567 G A IGHV1-18 Missense_Mutation p.A116V 0.18 tolerated(0.09) benign(0.075) TCGA-MP-A4TA-01 14 106757818 106757818 C A IGHV2-26 Silent p.G63G 0.11 TCGA-MP-A4TA-01 14 107048875 107048875 T A IGHV3-53 Missense_Mutation p.S49C 0.12 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-MP-A4TA-01 14 107095200 107095200 T A IGHV4-61 Missense_Mutation p.T94S 0.08 deleterious(0.04) benign(0.189) TCGA-MP-A4TA-01 14 21424045 21424045 G C RNASE2 Missense_Mutation p.E39Q 0.22 tolerated(0.38) benign(0.025) TCGA-MP-A4TA-01 14 39763269 39763269 A T CTAGE5 Silent p.V192V 0.15 TCGA-MP-A4TA-01 14 52477609 52477609 A T NID2 Missense_Mutation p.V1236E 0.05 deleterious(0) probably_damaging(0.982) TCGA-MP-A4TA-01 14 64491694 64491694 A G SYNE2 Missense_Mutation p.M1969V 0.13 benign(0.006) TCGA-MP-A4TA-01 14 67576858 67576858 C G GPHN Missense_Mutation p.P432R 0.10 tolerated(0.09) probably_damaging(1) TCGA-MP-A4TA-01 14 74823781 74823781 G T VRTN Missense_Mutation p.G99C 0.32 deleterious(0) probably_damaging(1) TCGA-MP-A4TA-01 14 89307380 89307380 G A TTC8 Splice_Site p.X110_splice 0.08 TCGA-MP-A4TA-01 14 90432512 90432512 G A TDP1 Missense_Mutation p.G194E 0.11 deleterious(0) probably_damaging(1) TCGA-MP-A4TA-01 14 94964383 94964383 A G SERPINA12 Missense_Mutation p.Y118H 0.26 tolerated(0.43) benign(0.081) TCGA-MP-A4TA-01 15 25326336 25326336 G A SNORD116-12 3'Flank 0.11 TCGA-MP-A4TA-01 15 39874466 39874466 G - THBS1 Frame_Shift_Del p.R47Hfs*3 0.21 TCGA-MP-A4TA-01 15 49924460 49924460 G T DTWD1 Silent p.T123T 0.23 TCGA-MP-A4TA-01 15 50226286 50226286 C G ATP8B4 Missense_Mutation p.D461H 0.16 deleterious(0.03) probably_damaging(0.92) TCGA-MP-A4TA-01 15 74636303 74636303 T A CYP11A1 Missense_Mutation p.Q219L 0.18 tolerated(1) benign(0.002) TCGA-MP-A4TA-01 15 75122474 75122474 G T CPLX3 Nonsense_Mutation p.E86* 0.17 TCGA-MP-A4TA-01 15 75682080 75682080 C A SIN3A Missense_Mutation p.Q978H 0.17 tolerated(0.06) benign(0.007) TCGA-MP-A4TA-01 15 75702199 75702199 G A SIN3A Missense_Mutation p.T432I 0.16 tolerated(0.28) benign(0.001) TCGA-MP-A4TA-01 15 75977206 75977206 C T CSPG4 Silent p.L1440L 0.20 TCGA-MP-A4TA-01 15 76496149 76496149 C A C15orf27 Missense_Mutation p.N363K 0.15 deleterious_low_confidence(0.01) benign(0.202) TCGA-MP-A4TA-01 15 89382207 89382207 T A ACAN Silent p.S128S 0.21 TCGA-MP-A4TA-01 15 89834929 89834929 C T FANCI Missense_Mutation p.S659F 0.16 tolerated(1) benign(0.001) TCGA-MP-A4TA-01 16 1391405 1391405 G T BAIAP3 Missense_Mutation p.G251C 0.19 deleterious(0.03) probably_damaging(0.984) TCGA-MP-A4TA-01 16 14041630 14041630 G C ERCC4 Missense_Mutation p.R726P 0.14 deleterious(0) probably_damaging(1) TCGA-MP-A4TA-01 16 20476863 20476863 G T ACSM2A Missense_Mutation p.A68S 0.09 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TA-01 16 24196851 24196851 A T PRKCB Missense_Mutation p.K562M 0.36 deleterious(0.02) probably_damaging(0.969) TCGA-MP-A4TA-01 16 30715383 30715383 A T SRCAP Splice_Site p.X19_splice 0.15 TCGA-MP-A4TA-01 16 30733463 30733463 G - SRCAP Frame_Shift_Del p.Q1189Sfs*2 0.15 TCGA-MP-A4TA-01 16 31434963 31434963 C A ITGAD Silent p.P1013P 0.13 TCGA-MP-A4TA-01 16 56396463 56396463 G A AMFR 3'UTR 0.07 TCGA-MP-A4TA-01 16 58571124 58571124 T C CNOT1 Silent p.G1805G 0.15 TCGA-MP-A4TA-01 16 58615251 58615251 G A CNOT1 Nonsense_Mutation p.Q405* 0.13 TCGA-MP-A4TA-01 16 68265157 68265157 T G ESRP2 Silent p.T545T 0.08 TCGA-MP-A4TA-01 16 68265990 68265990 C T ESRP2 Silent p.V338V 0.12 TCGA-MP-A4TA-01 16 70841704 70841704 T C HYDIN Missense_Mutation p.M5049V 0.06 benign(0.001) TCGA-MP-A4TA-01 16 70993553 70993553 A T HYDIN Missense_Mutation p.S2047T 0.11 probably_damaging(0.916) TCGA-MP-A4TA-01 16 71196621 71196621 T A HYDIN Missense_Mutation p.T177S 0.36 benign(0.012) TCGA-MP-A4TA-01 16 75204189 75204189 G T ZFP1 Missense_Mutation p.R394L 0.10 tolerated(0.67) benign(0.131) TCGA-MP-A4TA-01 16 84353038 84353038 A T WFDC1 Silent p.A141A 0.18 TCGA-MP-A4TA-01 16 88747978 88747978 G A SNAI3 Missense_Mutation p.P74L 0.22 tolerated(0.12) possibly_damaging(0.713) TCGA-MP-A4TA-01 17 11671768 11671768 A T DNAH9 Splice_Site p.X2391_splice 0.12 TCGA-MP-A4TA-01 17 38907492 38907492 C A KRT25 Silent p.L252L 0.06 TCGA-MP-A4TA-01 17 38991028 38991028 G A TMEM99 Missense_Mutation p.C87Y 0.08 tolerated_low_confidence(0.09) benign(0) TCGA-MP-A4TA-01 17 39190602 39190602 A T KRTAP1-3 Missense_Mutation p.C158S 0.09 deleterious(0) benign(0.291) TCGA-MP-A4TA-01 17 40652822 40652822 A T ATP6V0A1 Nonsense_Mutation p.K600* 0.08 TCGA-MP-A4TA-01 17 43531527 43531527 A G PLEKHM1 Missense_Mutation p.L564P 0.14 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TA-01 17 49124736 49124736 C G SPAG9 Missense_Mutation p.R197T 0.09 deleterious(0.01) possibly_damaging(0.655) TCGA-MP-A4TA-01 17 56060314 56060314 T C VEZF1 Silent p.P158P 0.14 TCGA-MP-A4TA-01 17 60749182 60749182 C G MRC2 Silent p.T430T 0.17 TCGA-MP-A4TA-01 17 66352911 66352911 G A ARSG Missense_Mutation p.A224T 0.15 tolerated(0.27) benign(0.098) TCGA-MP-A4TA-01 17 66511483 66511483 T A PRKAR1A Intron 0.17 TCGA-MP-A4TA-01 17 72741179 72741179 C A RAB37 Silent p.A179A 0.09 TCGA-MP-A4TA-01 17 72851153 72851153 C T GRIN2C Missense_Mutation p.E27K 0.12 tolerated(0.1) benign(0.007) TCGA-MP-A4TA-01 17 73015848 73015848 A G ICT1 Missense_Mutation p.N93D 0.10 deleterious(0.02) probably_damaging(0.997) TCGA-MP-A4TA-01 17 7577099 7577099 C A TP53 Missense_Mutation p.R280I 0.25 deleterious(0) probably_damaging(0.977) TCGA-MP-A4TA-01 17 80615707 80615707 G A RAB40B 3'UTR 0.14 TCGA-MP-A4TA-01 18 28574287 28574292 CATAAT - DSC3 In_Frame_Del p.D847_Y848del 0.15 TCGA-MP-A4TA-01 18 33706778 33706778 C T SLC39A6 Missense_Mutation p.G65R 0.14 deleterious(0) probably_damaging(1) TCGA-MP-A4TA-01 18 45374866 45374866 T G SMAD2 Missense_Mutation p.E326A 0.12 deleterious(0.02) probably_damaging(0.979) TCGA-MP-A4TA-01 18 50683728 50683728 A T DCC Missense_Mutation p.I422F 0.10 tolerated(0.59) benign(0.002) TCGA-MP-A4TA-01 19 11114068 11114068 G T SMARCA4 Nonsense_Mutation p.E666* 0.15 TCGA-MP-A4TA-01 19 11660568 11660568 C A CNN1 Silent p.P284P 0.16 TCGA-MP-A4TA-01 19 13418936 13418936 G T CACNA1A Silent p.G637G 0.21 TCGA-MP-A4TA-01 19 14991685 14991685 T C OR7A17 Silent p.L161L 0.16 TCGA-MP-A4TA-01 19 16631494 16631494 G A C19orf44 3'UTR 0.30 TCGA-MP-A4TA-01 19 20117398 20117398 T C ZNF682 Missense_Mutation p.T305A 0.22 tolerated(0.48) benign(0.129) TCGA-MP-A4TA-01 19 20807709 20807709 G T ZNF626 Missense_Mutation p.S325Y 0.07 tolerated(0.22) benign(0.029) TCGA-MP-A4TA-01 19 30934862 30934862 G T ZNF536 Silent p.P131P 0.15 TCGA-MP-A4TA-01 19 41216037 41216037 C A ADCK4 Silent p.L98L 0.17 TCGA-MP-A4TA-01 19 44636250 44636250 C T ZNF225 Nonsense_Mutation p.Q495* 0.16 TCGA-MP-A4TA-01 19 46828896 46828896 G T HIF3A Missense_Mutation p.Q480H 0.24 deleterious(0.03) benign(0.12) TCGA-MP-A4TA-01 19 56313016 56313016 C G NLRP11 Missense_Mutation p.C698S 0.20 tolerated(0.21) possibly_damaging(0.681) TCGA-MP-A4TA-01 19 56369395 56369395 C T NLRP4 Silent p.P212P 0.20 TCGA-MP-A4TA-01 19 56701792 56701792 T C ZSCAN5B Missense_Mutation p.R298G 0.21 deleterious(0) benign(0.345) TCGA-MP-A4TA-01 19 8152786 8152786 C A FBN3 Missense_Mutation p.C2181F 0.11 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TA-01 19 8152788 8152788 G T FBN3 Silent p.R2180R 0.11 TCGA-MP-A4TA-01 19 9069056 9069056 G T MUC16 Silent p.S6130S 0.15 TCGA-MP-A4TA-01 1 100327973 100327973 G A AGL Missense_Mutation p.E152K 0.13 deleterious(0.04) benign(0.196) TCGA-MP-A4TA-01 1 104116955 104116955 A G AMY2B Missense_Mutation p.Y273C 0.15 deleterious(0) probably_damaging(0.995) TCGA-MP-A4TA-01 1 111824376 111824376 T A CHIAP2 RNA 0.11 TCGA-MP-A4TA-01 1 113197232 113197232 A G CAPZA1 Missense_Mutation p.E122G 0.15 tolerated(0.11) benign(0.063) TCGA-MP-A4TA-01 1 117311298 117311298 G A CD2 Missense_Mutation p.G317S 0.08 deleterious(0.04) probably_damaging(0.947) TCGA-MP-A4TA-01 1 118570996 118570996 G T SPAG17 Missense_Mutation p.P1211T 0.09 tolerated(0.19) benign(0.031) TCGA-MP-A4TA-01 1 150525586 150525586 C A ADAMTSL4 Silent p.P97P 0.22 TCGA-MP-A4TA-01 1 152191361 152191361 C T HRNR Missense_Mutation p.R915Q 0.09 unknown(0) TCGA-MP-A4TA-01 1 158669490 158669490 C A OR6K2 Missense_Mutation p.G318V 0.22 deleterious_low_confidence(0.02) benign(0) TCGA-MP-A4TA-01 1 165877039 165877039 G C UCK2 Missense_Mutation p.E255D 0.27 deleterious(0.04) benign(0.016) TCGA-MP-A4TA-01 1 17084092 17084092 C G MST1L RNA 0.03 TCGA-MP-A4TA-01 1 171254514 171254514 G A FMO1 Missense_Mutation p.G477D 0.23 deleterious(0) probably_damaging(0.995) TCGA-MP-A4TA-01 1 171561047 171561047 G T PRRC2C 3'UTR 0.19 TCGA-MP-A4TA-01 1 186076022 186076022 G A HMCN1 Missense_Mutation p.D3593N 0.09 probably_damaging(0.998) TCGA-MP-A4TA-01 1 197115399 197115399 G T ASPM Missense_Mutation p.L57M 0.23 tolerated(0.1) possibly_damaging(0.646) TCGA-MP-A4TA-01 1 198700799 198700799 G C PTPRC Missense_Mutation p.E640Q 0.14 deleterious(0) possibly_damaging(0.529) TCGA-MP-A4TA-01 1 20517069 20517069 C T UBXN10 Silent p.A5A 0.09 TCGA-MP-A4TA-01 1 209964079 209964079 A T IRF6 Missense_Mutation p.V274D 0.19 deleterious(0) probably_damaging(0.996) TCGA-MP-A4TA-01 1 214818923 214818923 G T CENPF Missense_Mutation p.V2004L 0.26 benign(0.056) TCGA-MP-A4TA-01 1 215408461 215408461 G T KCNK2 Missense_Mutation p.E418D 0.14 tolerated_low_confidence(0.32) benign(0.001) TCGA-MP-A4TA-01 1 216373051 216373051 G A USH2A Silent p.P1243P 0.20 TCGA-MP-A4TA-01 1 223284336 223284336 T A TLR5 Nonsense_Mutation p.K680* 0.30 TCGA-MP-A4TA-01 1 228509157 228509157 T A OBSCN Missense_Mutation p.M5829K 0.20 possibly_damaging(0.688) TCGA-MP-A4TA-01 1 228509158 228509158 G T OBSCN Missense_Mutation p.M5829I 0.20 benign(0.249) TCGA-MP-A4TA-01 1 22987885 22987885 G A C1QB 3'UTR 0.07 TCGA-MP-A4TA-01 1 235969330 235969330 C T LYST Missense_Mutation p.E1036K 0.07 tolerated_low_confidence(0.08) benign(0.003) TCGA-MP-A4TA-01 1 237732581 237732581 G T RYR2 Missense_Mutation p.G1187V 0.11 probably_damaging(1) TCGA-MP-A4TA-01 1 238051808 238051808 G T ZP4 Silent p.R135R 0.18 TCGA-MP-A4TA-01 1 240255983 240255983 C T FMN2 Nonsense_Mutation p.Q192* 0.23 TCGA-MP-A4TA-01 1 240372002 240372002 A T FMN2 Missense_Mutation p.Y1297F 0.23 possibly_damaging(0.863) TCGA-MP-A4TA-01 1 247588785 247588785 C A NLRP3 Silent p.S680S 0.15 TCGA-MP-A4TA-01 1 247875566 247875566 A T OR6F1 Missense_Mutation p.S164R 0.12 deleterious(0) possibly_damaging(0.877) TCGA-MP-A4TA-01 1 248262679 248262679 T C OR2L13 Translation_Start_Site p.M1? 0.09 deleterious(0) probably_damaging(0.996) TCGA-MP-A4TA-01 1 248756791 248756791 C A OR2T10 Silent p.S93S 0.33 TCGA-MP-A4TA-01 1 248790367 248790367 G T OR2T11 Silent p.A21A 0.23 TCGA-MP-A4TA-01 1 25824924 25824924 C T TMEM57 Silent p.P654P 0.14 TCGA-MP-A4TA-01 1 26603736 26603736 G A CEP85 Missense_Mutation p.M747I 0.09 tolerated(1) benign(0.004) TCGA-MP-A4TA-01 1 32650179 32650179 G T TXLNA Nonsense_Mutation p.E187* 0.13 TCGA-MP-A4TA-01 1 34117964 34117964 C G CSMD2 Silent p.V1475V 0.19 TCGA-MP-A4TA-01 1 35580573 35580573 G A ZMYM1 Missense_Mutation p.V1048I 0.19 tolerated(1) benign(0.002) TCGA-MP-A4TA-01 1 5924047 5924047 T A NPHP4 Missense_Mutation p.K1348M 0.19 deleterious(0) probably_damaging(1) TCGA-MP-A4TA-01 1 64643225 64643225 C A ROR1 Missense_Mutation p.Q501K 0.10 tolerated(0.08) probably_damaging(0.993) TCGA-MP-A4TA-01 1 67685376 67685376 T C IL23R Silent p.P306P 0.13 TCGA-MP-A4TA-01 1 70303923 70303923 C T LRRC7 Missense_Mutation p.R164W 0.10 deleterious(0) probably_damaging(0.938) TCGA-MP-A4TA-01 1 79387397 79387397 T A ELTD1 Silent p.S386S 0.05 TCGA-MP-A4TA-01 20 20453524 20453524 C A RALGAPA2 Missense_Mutation p.C1815F 0.14 deleterious(0) possibly_damaging(0.884) TCGA-MP-A4TA-01 20 23667808 23667808 C T CST4 Missense_Mutation p.V87I 0.20 tolerated(0.07) benign(0.157) TCGA-MP-A4TA-01 20 25666740 25666740 C T ZNF337 Missense_Mutation p.D16N 0.11 deleterious(0) possibly_damaging(0.822) TCGA-MP-A4TA-01 20 270260 270260 C G C20orf96 Missense_Mutation p.V43L 0.13 tolerated(0.65) benign(0.01) TCGA-MP-A4TA-01 20 3028485 3028485 G C MRPS26 Silent p.L196L 0.15 TCGA-MP-A4TA-01 20 34081266 34081266 G T CEP250 Missense_Mutation p.G967V 0.15 possibly_damaging(0.586) TCGA-MP-A4TA-01 20 34090953 34090953 C T CEP250 Nonsense_Mutation p.Q1586* 0.11 TCGA-MP-A4TA-01 20 35060543 35060543 C T DLGAP4 Silent p.H141H 0.14 TCGA-MP-A4TA-01 20 3672708 3672708 C G SIGLEC1 Missense_Mutation p.G1391A 0.19 tolerated(0.11) possibly_damaging(0.73) TCGA-MP-A4TA-01 20 36848061 36848061 G T KIAA1755 Missense_Mutation p.L843M 0.17 tolerated(0.07) possibly_damaging(0.533) TCGA-MP-A4TA-01 20 43058358 43058358 G T HNF4A 3'UTR 0.15 TCGA-MP-A4TA-01 20 57036136 57036136 G A APCDD1L Missense_Mutation p.L406F 0.20 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TA-01 20 5932746 5932746 G A MCM8 Missense_Mutation p.G29R 0.13 deleterious_low_confidence(0) possibly_damaging(0.824) TCGA-MP-A4TA-01 20 8737757 8737757 G T PLCB1 Missense_Mutation p.G863V 0.08 deleterious(0.04) possibly_damaging(0.767) TCGA-MP-A4TA-01 21 10921973 10921973 A G TPTE Silent p.C350C 0.07 TCGA-MP-A4TA-01 21 15323418 15323418 G T ANKRD20A11P RNA 0.10 TCGA-MP-A4TA-01 21 32638650 32638650 C A TIAM1 Silent p.G213G 0.11 TCGA-MP-A4TA-01 21 34707908 34707908 G C IFNAR1 Missense_Mutation p.S52T 0.22 tolerated(0.13) benign(0.062) TCGA-MP-A4TA-01 21 34861694 34861694 T C DNAJC28 Missense_Mutation p.T3A 0.12 tolerated_low_confidence(0.44) benign(0.034) TCGA-MP-A4TA-01 21 41423905 41423905 G C DSCAM Nonsense_Mutation p.S1722* 0.15 TCGA-MP-A4TA-01 21 46645384 46645384 A C ADARB1 3'UTR 0.09 TCGA-MP-A4TA-01 22 24584390 24584390 G T SUSD2 Missense_Mutation p.G819C 0.19 deleterious(0.01) benign(0.319) TCGA-MP-A4TA-01 22 33960892 33960892 C A LARGE Silent p.T243T 0.24 TCGA-MP-A4TA-01 22 38026925 38026925 A T GGA1 Silent p.P449P 0.12 TCGA-MP-A4TA-01 2 103124708 103124708 C G SLC9A4 Missense_Mutation p.L457V 0.23 deleterious(0.05) possibly_damaging(0.677) TCGA-MP-A4TA-01 2 103431211 103431211 C A TMEM182 Silent p.I158I 0.32 TCGA-MP-A4TA-01 2 108487809 108487809 A G RGPD4 Missense_Mutation p.T1117A 0.19 tolerated(0.09) probably_damaging(0.951) TCGA-MP-A4TA-01 2 113089679 113089679 C A ZC3H6 Missense_Mutation p.L1062I 0.16 tolerated(0.19) benign(0.107) TCGA-MP-A4TA-01 2 116525923 116525923 G T DPP10 Silent p.V392V 0.17 TCGA-MP-A4TA-01 2 12880672 12880672 C A TRIB2 Missense_Mutation p.L262I 0.15 deleterious(0) probably_damaging(1) TCGA-MP-A4TA-01 2 137814741 137814741 A G THSD7B Missense_Mutation p.I297M 0.19 deleterious(0.02) possibly_damaging(0.887) TCGA-MP-A4TA-01 2 168115466 168115466 G T XIRP2 3'UTR 0.24 TCGA-MP-A4TA-01 2 172942561 172942561 A C METAP1D Silent p.P247P 0.24 TCGA-MP-A4TA-01 2 179447686 179447686 G T TTN Silent p.T21948T 0.10 TCGA-MP-A4TA-01 2 179453673 179453673 G A TTN Missense_Mutation p.R20927C 0.13 TCGA-MP-A4TA-01 2 179463668 179463668 C A TTN Missense_Mutation p.M18923I 0.19 TCGA-MP-A4TA-01 2 179596221 179596221 G A TTN Missense_Mutation p.P5758S 0.12 TCGA-MP-A4TA-01 2 182438565 182438565 T C CERKL Silent p.Q176Q 0.16 TCGA-MP-A4TA-01 2 189872836 189872836 C T COL3A1 Missense_Mutation p.P1165S 0.11 unknown(0) TCGA-MP-A4TA-01 2 193059164 193059164 T C TMEFF2 Silent p.L29L 0.20 TCGA-MP-A4TA-01 2 207172049 207172049 G C ZDBF2 Missense_Mutation p.D933H 0.17 deleterious(0.05) probably_damaging(0.969) TCGA-MP-A4TA-01 2 207611130 207611130 C G MDH1B Missense_Mutation p.G413R 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-MP-A4TA-01 2 220503474 220503474 C A SLC4A3 Nonsense_Mutation p.S996* 0.09 TCGA-MP-A4TA-01 2 228228680 228228680 A G TM4SF20 Silent p.S150S 0.16 TCGA-MP-A4TA-01 2 237994652 237994652 G C COPS8 Missense_Mutation p.K15N 0.20 deleterious(0.01) benign(0.101) TCGA-MP-A4TA-01 2 238296628 238296628 G C COL6A3 Silent p.A303A 0.13 TCGA-MP-A4TA-01 2 242573004 242573004 C T THAP4 Missense_Mutation p.A190T 0.15 tolerated_low_confidence(0.05) benign(0.027) TCGA-MP-A4TA-01 2 242758329 242758329 G T NEU4 Silent p.P483P 0.19 TCGA-MP-A4TA-01 2 24929506 24929506 G T NCOA1 Silent p.S389S 0.13 TCGA-MP-A4TA-01 2 25467188 25467188 C T DNMT3A Missense_Mutation p.V563M 0.36 deleterious(0.01) possibly_damaging(0.906) TCGA-MP-A4TA-01 2 32445437 32445437 A T SLC30A6 Silent p.A387A 0.07 TCGA-MP-A4TA-01 2 33590570 33590570 G C LTBP1 Missense_Mutation p.D1571H 0.10 deleterious(0.02) probably_damaging(0.971) TCGA-MP-A4TA-01 2 3596229 3596229 C - RNASEH1 Splice_Site p.X217_splice 0.09 TCGA-MP-A4TA-01 2 50699553 50699553 C T NRXN1 Missense_Mutation p.V1083I 0.11 tolerated(0.42) benign(0.404) TCGA-MP-A4TA-01 2 69172517 69172517 C A GKN2 Missense_Mutation p.A180S 0.12 tolerated(0.22) benign(0.021) TCGA-MP-A4TA-01 2 71791192 71791192 A T DYSF Missense_Mutation p.Q805L 0.10 deleterious(0) probably_damaging(0.994) TCGA-MP-A4TA-01 2 77745780 77745780 G C LRRTM4 Silent p.S405S 0.18 TCGA-MP-A4TA-01 2 80835392 80835392 C A CTNNA2 Missense_Mutation p.S793R 0.09 deleterious(0) probably_damaging(0.94) TCGA-MP-A4TA-01 2 86371398 86371398 G A IMMT Missense_Mutation p.P757L 0.15 tolerated_low_confidence(0.19) benign(0.158) TCGA-MP-A4TA-01 2 89292385 89292385 C A IGKV1-8 Missense_Mutation p.A5S 0.11 tolerated(0.2) benign(0.022) TCGA-MP-A4TA-01 2 90198980 90198980 G T IGKV1D-12 Silent p.A47A 0.07 TCGA-MP-A4TA-01 2 98351725 98351725 C A ZAP70 Missense_Mutation p.D365E 0.14 tolerated(0.71) possibly_damaging(0.737) TCGA-MP-A4TA-01 3 108403130 108403130 A - DZIP3 Frame_Shift_Del p.M985Cfs*19 0.13 TCGA-MP-A4TA-01 3 108776288 108776288 G T MORC1 Missense_Mutation p.N359K 0.12 deleterious(0) possibly_damaging(0.843) TCGA-MP-A4TA-01 3 112642509 112642509 C A CD200R1 3'UTR 0.13 TCGA-MP-A4TA-01 3 130283847 130283847 G A COL6A6 Missense_Mutation p.G224D 0.18 tolerated(0.16) probably_damaging(1) TCGA-MP-A4TA-01 3 130284290 130284290 G A COL6A6 Missense_Mutation p.D372N 0.13 tolerated(0.65) benign(0.004) TCGA-MP-A4TA-01 3 130285665 130285665 A T COL6A6 Missense_Mutation p.I468F 0.19 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TA-01 3 131254157 131254157 A T CPNE4 Missense_Mutation p.L519Q 0.08 deleterious(0) probably_damaging(0.997) TCGA-MP-A4TA-01 3 140409891 140409891 G T TRIM42 Missense_Mutation p.V648L 0.09 deleterious(0.02) probably_damaging(0.952) TCGA-MP-A4TA-01 3 142772595 142772595 C T U2SURP Silent p.D911D 0.12 TCGA-MP-A4TA-01 3 151075070 151075070 A G MED12L Missense_Mutation p.T876A 0.12 tolerated(0.09) benign(0.416) TCGA-MP-A4TA-01 3 151156157 151156157 G T IGSF10 Silent p.G2064G 0.10 TCGA-MP-A4TA-01 3 155551291 155551291 T C SLC33A1 Missense_Mutation p.Y411C 0.06 deleterious(0.02) possibly_damaging(0.895) TCGA-MP-A4TA-01 3 164776961 164776961 T C SI Missense_Mutation p.I425V 0.12 deleterious(0.04) possibly_damaging(0.841) TCGA-MP-A4TA-01 3 192053230 192053230 C A FGF12 Missense_Mutation p.G112C 0.17 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TA-01 3 197427574 197427574 C A KIAA0226 Nonsense_Mutation p.E391* 0.05 TCGA-MP-A4TA-01 3 197430434 197430434 C T KIAA0226 Silent p.Q185Q 0.20 TCGA-MP-A4TA-01 3 38739966 38739966 C G SCN10A Missense_Mutation p.R1582P 0.14 deleterious(0) probably_damaging(0.997) TCGA-MP-A4TA-01 3 58178645 58178645 C A DNASE1L3 Intron 0.27 TCGA-MP-A4TA-01 3 77623698 77623698 C T ROBO2 Nonsense_Mutation p.Q690* 0.09 TCGA-MP-A4TA-01 3 78667116 78667116 G A ROBO1 Silent p.P1317P 0.08 TCGA-MP-A4TA-01 3 78734957 78734957 G C ROBO1 Missense_Mutation p.I427M 0.27 tolerated(0.13) probably_damaging(0.934) TCGA-MP-A4TA-01 4 104103946 104103946 A G CENPE Silent p.S312S 0.15 TCGA-MP-A4TA-01 4 106819105 106819105 G T NPNT Missense_Mutation p.G40V 0.13 tolerated(0.07) benign(0.082) TCGA-MP-A4TA-01 4 123377618 123377618 G - IL2 5'UTR 0.10 TCGA-MP-A4TA-01 4 155510605 155510605 C A FGA Missense_Mutation p.C55F 0.11 deleterious(0) possibly_damaging(0.837) TCGA-MP-A4TA-01 4 159092507 159092507 C A FAM198B Silent p.P7P 0.20 TCGA-MP-A4TA-01 4 164534487 164534487 G T MARCH1 Missense_Mutation p.P74Q 0.22 tolerated(0.07) possibly_damaging(0.858) TCGA-MP-A4TA-01 4 26997038 26997038 G T STIM2 Missense_Mutation p.L145F 0.14 deleterious(0) probably_damaging(1) TCGA-MP-A4TA-01 4 46043188 46043188 C A GABRG1 Missense_Mutation p.Q405H 0.17 deleterious(0.05) benign(0.116) TCGA-MP-A4TA-01 4 57861554 57861554 C G POLR2B Missense_Mutation p.S238R 0.19 tolerated(0.22) benign(0.155) TCGA-MP-A4TA-01 4 71509712 71509712 C A ENAM Missense_Mutation p.P857T 0.08 deleterious(0) probably_damaging(0.923) TCGA-MP-A4TA-01 4 72205110 72205110 C T SLC4A4 Nonsense_Mutation p.R93* 0.06 TCGA-MP-A4TA-01 4 83799972 83799972 T A SEC31A Nonsense_Mutation p.K105* 0.17 TCGA-MP-A4TA-01 4 86938299 86938299 T C MAPK10 3'UTR 0.10 TCGA-MP-A4TA-01 4 88766948 88766948 G A MEPE Missense_Mutation p.E310K 0.11 tolerated(0.09) benign(0.079) TCGA-MP-A4TA-01 5 121759050 121759050 A T SNCAIP Silent p.P206P 0.06 TCGA-MP-A4TA-01 5 131545982 131545982 G C P4HA2 Missense_Mutation p.S235C 0.16 deleterious(0.02) benign(0.345) TCGA-MP-A4TA-01 5 13719020 13719022 AGT GAGG DNAH5 Frame_Shift_Ins p.R4158Pfs*9 0.16 TCGA-MP-A4TA-01 5 137897272 137897272 G A HSPA9 Silent p.P393P 0.15 TCGA-MP-A4TA-01 5 140175016 140175016 G T PCDHA2 Missense_Mutation p.G156V 0.11 deleterious_low_confidence(0) possibly_damaging(0.714) TCGA-MP-A4TA-01 5 140176084 140176084 C T PCDHA2 Missense_Mutation p.A512V 0.12 deleterious_low_confidence(0) possibly_damaging(0.547) TCGA-MP-A4TA-01 5 140203659 140203659 G T PCDHA5 Missense_Mutation p.D767Y 0.16 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-MP-A4TA-01 5 140481026 140481026 T C PCDHB3 Missense_Mutation p.S265P 0.07 deleterious_low_confidence(0) benign(0.169) TCGA-MP-A4TA-01 5 140589142 140589142 C A PCDHB12 Silent p.P221P 0.18 TCGA-MP-A4TA-01 5 147505144 147505144 C T SPINK5 Missense_Mutation p.R933C 0.20 tolerated(0.09) benign(0) TCGA-MP-A4TA-01 5 149264102 149264102 T C PDE6A Missense_Mutation p.E656G 0.10 deleterious(0) benign(0.422) TCGA-MP-A4TA-01 5 154396219 154396219 C G KIF4B Missense_Mutation p.L934V 0.15 deleterious(0.02) benign(0.047) TCGA-MP-A4TA-01 5 156479455 156479455 G T HAVCR1 Missense_Mutation p.P197Q 0.11 deleterious(0.01) unknown(0) TCGA-MP-A4TA-01 5 16671037 16671037 G T MYO10 Silent p.L1827L 0.17 TCGA-MP-A4TA-01 5 167798481 167798481 G T WWC1 Nonsense_Mutation p.G58* 0.12 TCGA-MP-A4TA-01 5 167850626 167850626 G T WWC1 Missense_Mutation p.D455Y 0.13 deleterious(0) probably_damaging(0.967) TCGA-MP-A4TA-01 5 167850627 167850627 A G WWC1 Missense_Mutation p.D455G 0.14 tolerated(1) benign(0.02) TCGA-MP-A4TA-01 5 170346493 170346493 C T RANBP17 Nonsense_Mutation p.Q384* 0.10 TCGA-MP-A4TA-01 5 178392991 178392991 A T ZNF454 3'UTR 0.29 TCGA-MP-A4TA-01 5 179300160 179300160 C T TBC1D9B Missense_Mutation p.A759T 0.18 tolerated(0.18) benign(0.001) TCGA-MP-A4TA-01 5 180219536 180219536 C A MGAT1 Nonsense_Mutation p.E146* 0.10 TCGA-MP-A4TA-01 5 21755910 21755910 G A CDH12 Missense_Mutation p.R559C 0.21 deleterious(0) probably_damaging(0.996) TCGA-MP-A4TA-01 5 23527274 23527274 G T PRDM9 Missense_Mutation p.V693F 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-MP-A4TA-01 5 34043216 34043216 C T C1QTNF3 Silent p.Q5Q 0.18 TCGA-MP-A4TA-01 5 39202591 39202591 T G FYB Missense_Mutation p.T168P 0.14 tolerated(0.15) benign(0.001) TCGA-MP-A4TA-01 5 41049486 41049486 G A MROH2B Missense_Mutation p.A466V 0.29 tolerated(0.24) benign(0.168) TCGA-MP-A4TA-01 5 41149434 41149434 T A C6 Missense_Mutation p.E844D 0.07 tolerated(0.82) benign(0.001) TCGA-MP-A4TA-01 5 45262738 45262738 G T HCN1 Missense_Mutation p.T653N 0.14 tolerated(0.3) benign(0.026) TCGA-MP-A4TA-01 5 72311461 72311461 A G FCHO2 Silent p.Q203Q 0.09 TCGA-MP-A4TA-01 5 93076429 93076429 C A POU5F2 Missense_Mutation p.A281S 0.17 deleterious(0.04) benign(0.364) TCGA-MP-A4TA-01 6 102372515 102372515 C A GRIK2 Missense_Mutation p.N596K 0.12 deleterious(0.03) probably_damaging(0.963) TCGA-MP-A4TA-01 6 117128109 117128109 G T GPRC6A Silent p.T253T 0.15 TCGA-MP-A4TA-01 6 117128110 117128110 G T GPRC6A Missense_Mutation p.T253N 0.14 tolerated(0.18) benign(0.042) TCGA-MP-A4TA-01 6 147124122 147124122 C A ADGB Intron 0.12 TCGA-MP-A4TA-01 6 149983376 149983376 T A LATS1 Splice_Site p.X962_splice 0.16 TCGA-MP-A4TA-01 6 160328098 160328098 G T MAS1 Missense_Mutation p.W37C 0.26 deleterious(0.01) possibly_damaging(0.593) TCGA-MP-A4TA-01 6 160454099 160454099 C G IGF2R Missense_Mutation p.Q391E 0.22 tolerated(0.14) benign(0.079) TCGA-MP-A4TA-01 6 167789462 167789462 C G TCP10 Missense_Mutation p.R227T 0.21 tolerated(0.25) benign(0.009) TCGA-MP-A4TA-01 6 28264625 28264625 G T PGBD1 Missense_Mutation p.Q225H 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.533) TCGA-MP-A4TA-01 6 38029416 38029416 A G ZFAND3 Missense_Mutation p.N54D 0.08 tolerated(0.06) benign(0.002) TCGA-MP-A4TA-01 6 39552729 39552729 C G KIF6 Missense_Mutation p.R341P 0.23 deleterious(0) probably_damaging(1) TCGA-MP-A4TA-01 6 49665656 49665656 C A CRISP2 Silent p.S144S 0.16 TCGA-MP-A4TA-01 6 49754625 49754625 A G PGK2 Silent p.D92D 0.15 TCGA-MP-A4TA-01 6 50683058 50683058 A G TFAP2D Missense_Mutation p.Y90C 0.20 deleterious(0) benign(0.184) TCGA-MP-A4TA-01 6 51503747 51503747 G T PKHD1 Silent p.T3802T 0.18 TCGA-MP-A4TA-01 6 54805102 54805102 G A FAM83B Missense_Mutation p.A445T 0.13 tolerated(0.14) possibly_damaging(0.838) TCGA-MP-A4TA-01 6 55145137 55145137 G A HCRTR2 Missense_Mutation p.A334T 0.15 tolerated(0.61) benign(0.001) TCGA-MP-A4TA-01 6 56031727 56031727 T C COL21A1 Missense_Mutation p.T419A 0.14 deleterious(0) possibly_damaging(0.507) TCGA-MP-A4TA-01 6 56989601 56989601 G T ZNF451 Missense_Mutation p.A86S 0.14 deleterious(0) probably_damaging(0.991) TCGA-MP-A4TA-01 6 57012847 57012847 G T ZNF451 Missense_Mutation p.C655F 0.11 tolerated(0.3) probably_damaging(0.998) TCGA-MP-A4TA-01 6 57512704 57512704 C T PRIM2 3'UTR 0.04 TCGA-MP-A4TA-01 6 75823356 75823356 T A COL12A1 Missense_Mutation p.D2601V 0.13 probably_damaging(0.998) TCGA-MP-A4TA-01 7 103338516 103338516 G A RELN Silent p.I309I 0.18 TCGA-MP-A4TA-01 7 106526685 106526685 T C PIK3CG Missense_Mutation p.F993S 0.14 deleterious(0.02) benign(0.191) TCGA-MP-A4TA-01 7 112415279 112415279 C A TMEM168 Missense_Mutation p.G408V 0.12 deleterious(0) possibly_damaging(0.643) TCGA-MP-A4TA-01 7 112415280 112415280 C A TMEM168 Nonsense_Mutation p.G408* 0.12 TCGA-MP-A4TA-01 7 113517870 113517870 C A PPP1R3A Missense_Mutation p.D1093Y 0.14 deleterious(0) probably_damaging(1) TCGA-MP-A4TA-01 7 119915261 119915261 G T KCND2 Missense_Mutation p.G192V 0.17 deleterious(0.02) probably_damaging(0.996) TCGA-MP-A4TA-01 7 122755557 122755557 G C SLC13A1 3'UTR 0.09 TCGA-MP-A4TA-01 7 127235454 127235454 G T FSCN3 Missense_Mutation p.G80C 0.17 deleterious(0) probably_damaging(1) TCGA-MP-A4TA-01 7 141292984 141292984 A T AGK Missense_Mutation p.Q47L 0.10 tolerated(0.11) benign(0.002) TCGA-MP-A4TA-01 7 141952015 141952015 G T PRSS58 3'UTR 0.30 TCGA-MP-A4TA-01 7 142139455 142139455 G A TRBV7-6 Missense_Mutation p.A57V 0.14 tolerated(0.08) benign(0.015) TCGA-MP-A4TA-01 7 142723821 142723821 G T OR9A2 Missense_Mutation p.N133K 0.10 deleterious(0.03) possibly_damaging(0.616) TCGA-MP-A4TA-01 7 149493712 149493712 G C SSPO RNA 0.17 TCGA-MP-A4TA-01 7 154875908 154875908 G A HTR5A Missense_Mutation p.R262H 0.17 tolerated(0.11) benign(0.013) TCGA-MP-A4TA-01 7 24870414 24870414 G T OSBPL3 Missense_Mutation p.D619E 0.15 tolerated(0.11) benign(0.248) TCGA-MP-A4TA-01 7 27831727 27831727 G C TAX1BP1 Missense_Mutation p.V381L 0.13 tolerated(0.09) probably_damaging(0.994) TCGA-MP-A4TA-01 7 33312624 33312624 G T BBS9 Missense_Mutation p.V235L 0.17 tolerated(0.39) benign(0.137) TCGA-MP-A4TA-01 7 38398336 38398336 G T TRGV3 Missense_Mutation p.T44N 0.21 tolerated(0.49) benign(0.042) TCGA-MP-A4TA-01 7 4167059 4167059 G A SDK1 Silent p.S1290S 0.14 TCGA-MP-A4TA-01 7 45750210 45750210 G T ADCY1 Missense_Mutation p.A1006S 0.10 deleterious(0.04) probably_damaging(1) TCGA-MP-A4TA-01 7 83277873 83277873 C A SEMA3E 5'UTR 0.18 TCGA-MP-A4TA-01 7 91624937 91624937 G A AKAP9 Silent p.L251L 0.13 TCGA-MP-A4TA-01 7 96651579 96651579 T C DLX5 Missense_Mutation p.Q153R 0.16 deleterious(0) benign(0.172) TCGA-MP-A4TA-01 7 99669713 99669713 G A ZNF3 Nonsense_Mutation p.R132* 0.21 TCGA-MP-A4TA-01 8 100155213 100155213 C G VPS13B Missense_Mutation p.Q555E 0.15 tolerated(0.4) benign(0.217) TCGA-MP-A4TA-01 8 103316394 103316394 G A UBR5 Missense_Mutation p.A944V 0.15 tolerated(0.3) possibly_damaging(0.541) TCGA-MP-A4TA-01 8 103841564 103841564 C A AZIN1 Nonsense_Mutation p.E391* 0.18 TCGA-MP-A4TA-01 8 105160931 105160931 G A RIMS2 Intron 0.11 TCGA-MP-A4TA-01 8 113317058 113317058 T C CSMD3 Missense_Mutation p.K2720E 0.09 tolerated(0.12) possibly_damaging(0.796) TCGA-MP-A4TA-01 8 11406632 11406632 G A BLK Splice_Site p.X123_splice 0.33 TCGA-MP-A4TA-01 8 124031533 124031533 C T DERL1 Silent p.E173E 0.11 TCGA-MP-A4TA-01 8 133816219 133816219 T A PHF20L1 Nonsense_Mutation p.C221* 0.10 TCGA-MP-A4TA-01 8 13948038 13948038 C A SGCZ Missense_Mutation p.V285F 0.21 deleterious(0) possibly_damaging(0.605) TCGA-MP-A4TA-01 8 139603681 139603681 G T COL22A1 Missense_Mutation p.P1560H 0.12 unknown(0) TCGA-MP-A4TA-01 8 144994826 144994826 C A PLEC Missense_Mutation p.V3192L 0.23 benign(0.125) TCGA-MP-A4TA-01 8 144997239 144997239 C T PLEC Silent p.A2423A 0.20 TCGA-MP-A4TA-01 8 145699818 145699818 G T FOXH1 Missense_Mutation p.P301T 0.15 deleterious(0) possibly_damaging(0.77) TCGA-MP-A4TA-01 8 2910088 2910088 T A CSMD1 Missense_Mutation p.Y2519F 0.38 probably_damaging(0.995) TCGA-MP-A4TA-01 8 30657229 30657229 G A PPP2CB Missense_Mutation p.R49C 0.16 deleterious(0.03) benign(0.243) TCGA-MP-A4TA-01 8 30890211 30890211 G T PURG Missense_Mutation p.L30I 0.29 tolerated_low_confidence(0.32) benign(0.004) TCGA-MP-A4TA-01 8 37602157 37602157 G T ERLIN2 Nonsense_Mutation p.E123* 0.12 TCGA-MP-A4TA-01 8 39505941 39505941 A T ADAM18 Missense_Mutation p.K375N 0.37 tolerated(0.05) benign(0.34) TCGA-MP-A4TA-01 8 40532251 40532251 C - ZMAT4 Frame_Shift_Del p.T184Qfs*8 0.10 TCGA-MP-A4TA-01 8 41906267 41906267 G C KAT6A Missense_Mutation p.P77A 0.13 probably_damaging(0.978) TCGA-MP-A4TA-01 8 43173743 43173743 A G POTEA RNA 0.16 TCGA-MP-A4TA-01 8 51363113 51363113 C A SNTG1 Intron 0.20 TCGA-MP-A4TA-01 8 52732935 52732935 G T PCMTD1 Nonsense_Mutation p.Y350* 0.10 TCGA-MP-A4TA-01 8 68131671 68131671 T C ARFGEF1 Missense_Mutation p.T1445A 0.12 tolerated(0.15) benign(0.013) TCGA-MP-A4TA-01 8 72951130 72951130 A G TRPA1 Silent p.T755T 0.18 TCGA-MP-A4TA-01 8 76456116 76456116 G T HNF4G Silent p.G53G 0.18 TCGA-MP-A4TA-01 8 87439906 87439906 T C WWP1 Missense_Mutation p.Y398H 0.17 deleterious(0) probably_damaging(0.962) TCGA-MP-A4TA-01 9 104499661 104499661 G - GRIN3A Frame_Shift_Del p.Q201Rfs*6 0.12 TCGA-MP-A4TA-01 9 120476201 120476201 C T TLR4 Nonsense_Mutation p.Q599* 0.21 TCGA-MP-A4TA-01 9 127789172 127789172 G C SCAI Missense_Mutation p.T167S 0.11 tolerated(0.09) benign(0.011) TCGA-MP-A4TA-01 9 13168519 13168519 G A MPDZ Nonsense_Mutation p.R1034* 0.19 TCGA-MP-A4TA-01 9 136131529 136131529 C A RP11-430N14.4 5'Flank 0.28 TCGA-MP-A4TA-01 9 27950700 27950700 C T LINGO2 5'UTR 0.13 TCGA-MP-A4TA-01 9 37746084 37746084 A T FRMPD1 Missense_Mutation p.E1352V 0.17 tolerated(0.05) possibly_damaging(0.779) TCGA-MP-A4TA-01 9 43627229 43627229 C A SPATA31A6 Silent p.L486L 0.17 TCGA-MP-A4TA-01 9 75435985 75435985 G A TMC1 Missense_Mutation p.C664Y 0.17 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TA-01 9 79323521 79323521 G T PRUNE2 Silent p.V1223V 0.17 TCGA-MP-A4TA-01 9 87482253 87482253 C A NTRK2 Missense_Mutation p.P514T 0.14 tolerated(0.25) probably_damaging(0.999) TCGA-MP-A4TA-01 9 90502746 90502746 G A SPATA31E1 Missense_Mutation p.R1115H 0.09 tolerated(0.55) benign(0.034) TCGA-MP-A4TA-01 9 97897669 97897669 A T FANCC Missense_Mutation p.C268S 0.13 tolerated(0.59) benign(0.005) TCGA-MP-A4TA-01 X 101911201 101911201 A T GPRASP1 Missense_Mutation p.E787V 0.14 deleterious(0.03) possibly_damaging(0.796) TCGA-MP-A4TA-01 X 108636226 108636226 A T GUCY2F Nonsense_Mutation p.L828* 0.14 TCGA-MP-A4TA-01 X 108719012 108719012 G T GUCY2F Missense_Mutation p.P52T 0.14 tolerated(1) benign(0.115) TCGA-MP-A4TA-01 X 112021645 112021645 T A AMOT 3'UTR 0.17 TCGA-MP-A4TA-01 X 113965706 113965706 G C HTR2C Silent p.V13V 0.08 TCGA-MP-A4TA-01 X 118221392 118221392 C A KIAA1210 Missense_Mutation p.R1267S 0.12 tolerated(0.17) benign(0.179) TCGA-MP-A4TA-01 X 123519834 123519834 C A TENM1 Missense_Mutation p.M1923I 0.05 deleterious(0) benign(0.324) TCGA-MP-A4TA-01 X 150889973 150889973 G T FATE1 Missense_Mutation p.R114L 0.15 tolerated(0.15) benign(0.117) TCGA-MP-A4TA-01 X 153582539 153582539 T C FLNA Missense_Mutation p.Y1846C 0.09 tolerated(0.06) benign(0.112) TCGA-MP-A4TA-01 X 19389509 19389509 G T MAP3K15 Nonsense_Mutation p.S1083* 0.10 TCGA-MP-A4TA-01 X 26157554 26157554 G C MAGEB18 Missense_Mutation p.R151T 0.24 deleterious(0) probably_damaging(0.98) TCGA-MP-A4TA-01 X 3228223 3228223 G T MXRA5 Missense_Mutation p.P2674H 0.13 deleterious(0) probably_damaging(1) TCGA-MP-A4TA-01 X 32305710 32305710 C A DMD Nonsense_Mutation p.E2076* 0.11 TCGA-MP-A4TA-01 X 32305711 32305711 C A DMD Missense_Mutation p.Q2075H 0.11 benign(0.387) TCGA-MP-A4TA-01 X 34149594 34149594 C T FAM47A Missense_Mutation p.D268N 0.17 tolerated(0.57) possibly_damaging(0.728) TCGA-MP-A4TA-01 X 35820410 35820410 G C MAGEB16 Missense_Mutation p.A33P 0.18 tolerated(0.08) benign(0.131) TCGA-MP-A4TA-01 X 49084716 49084716 G A CACNA1F Silent p.Y337Y 0.16 TCGA-MP-A4TA-01 X 52893883 52893883 A C XAGE3 Silent p.T78T 0.17 TCGA-MP-A4TA-01 X 67339135 67339135 T A OPHN1 Missense_Mutation p.D439V 0.12 tolerated(0.06) possibly_damaging(0.858) TCGA-MP-A4TA-01 X 77387162 77387162 T A TAF9B Missense_Mutation p.E234V 0.13 tolerated(0.09) possibly_damaging(0.501) TCGA-MP-A4TA-01 X 83128822 83128822 C A CYLC1 Missense_Mutation p.S369Y 0.10 deleterious(0) unknown(0) TCGA-MP-A4TA-01 X 92927307 92927307 C T NAP1L3 Missense_Mutation p.D333N 0.23 deleterious(0) probably_damaging(0.945) TCGA-MP-A4TA-01 X 9656164 9656164 T A TBL1X Silent p.A155A 0.16 TCGA-MP-A4TC-01 10 104414874 104414874 A C TRIM8 Missense_Mutation p.Q235P 0.22 deleterious(0.03) possibly_damaging(0.528) TCGA-MP-A4TC-01 10 105037910 105037910 G A INA Silent p.E314E 0.10 TCGA-MP-A4TC-01 10 17199591 17199591 T C TRDMT1 Missense_Mutation p.S246G 0.09 tolerated(0.1) benign(0.021) TCGA-MP-A4TC-01 10 28970916 28970916 A T BAMBI Missense_Mutation p.Q123H 0.25 tolerated(0.16) benign(0.264) TCGA-MP-A4TC-01 10 64950823 64950824 TC - JMJD1C Frame_Shift_Del p.E2041Tfs*5 0.16 TCGA-MP-A4TC-01 10 71146111 71146111 G C HK1 Missense_Mutation p.K628N 0.10 tolerated(0.4) benign(0.169) TCGA-MP-A4TC-01 10 73039629 73039629 C G UNC5B Missense_Mutation p.A44G 0.12 tolerated(0.63) benign(0.043) TCGA-MP-A4TC-01 11 1016832 1016832 T C MUC6 Missense_Mutation p.Q1990R 0.03 possibly_damaging(0.766) TCGA-MP-A4TC-01 11 103052498 103052498 A T DYNC2H1 Silent p.T2120T 0.46 TCGA-MP-A4TC-01 11 104879579 104879579 G T CASP5 Missense_Mutation p.Q59K 0.45 tolerated_low_confidence(0.27) benign(0.016) TCGA-MP-A4TC-01 11 1096443 1096443 C A MUC2 Missense_Mutation p.F2156L 0.23 unknown(0) TCGA-MP-A4TC-01 11 123677045 123677045 T C OR6M1 Missense_Mutation p.S5G 0.06 deleterious(0) benign(0.009) TCGA-MP-A4TC-01 11 4608694 4608694 G - OR52I2 Frame_Shift_Del p.A218Hfs*13 0.21 TCGA-MP-A4TC-01 11 55340279 55340279 C A OR4C16 Missense_Mutation p.H226N 0.35 deleterious(0.01) probably_damaging(0.976) TCGA-MP-A4TC-01 11 55659007 55659007 G T TRIM51 Missense_Mutation p.V420L 0.27 deleterious(0.04) possibly_damaging(0.692) TCGA-MP-A4TC-01 11 55735576 55735576 G C OR10AG1 Missense_Mutation p.Q122E 0.19 deleterious(0.01) benign(0.086) TCGA-MP-A4TC-01 11 57982753 57982753 G C OR1S1 Missense_Mutation p.L179F 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-MP-A4TC-01 11 59807815 59807815 A G OOSP2 5'UTR 0.71 TCGA-MP-A4TC-01 11 61960974 61960974 G T SCGB1D1 3'UTR 0.57 TCGA-MP-A4TC-01 11 62040593 62040593 C A SCGB2A2 3'UTR 0.55 TCGA-MP-A4TC-01 11 66102440 66102440 T A RIN1 Missense_Mutation p.Q277L 0.52 tolerated(0.12) benign(0.055) TCGA-MP-A4TC-01 11 84245694 84245694 G T DLG2 Silent p.L146L 0.42 TCGA-MP-A4TC-01 11 99932052 99932052 T A CNTN5 Missense_Mutation p.D363E 0.41 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TC-01 12 107090155 107090155 G A RFX4 Missense_Mutation p.C264Y 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-MP-A4TC-01 12 132334346 132334346 G A MMP17 Splice_Site p.X402_splice 0.22 TCGA-MP-A4TC-01 12 18715656 18715656 G T PIK3C2G Nonsense_Mutation p.E1163* 0.21 TCGA-MP-A4TC-01 12 1940272 1940272 T G LRTM2 Missense_Mutation p.L80R 0.20 deleterious(0) probably_damaging(0.994) TCGA-MP-A4TC-01 12 20787935 20787935 C A PDE3A Missense_Mutation p.P649H 0.17 tolerated(0.08) benign(0.345) TCGA-MP-A4TC-01 12 24365410 24365410 G A MIR920 RNA 0.18 TCGA-MP-A4TC-01 12 250611 250611 C A IQSEC3 Intron 0.45 TCGA-MP-A4TC-01 12 45269063 45269063 G A NELL2 Silent p.T93T 0.18 TCGA-MP-A4TC-01 12 5020569 5020569 G C KCNA1 Missense_Mutation p.V9L 0.16 tolerated_low_confidence(0.47) benign(0.007) TCGA-MP-A4TC-01 12 52284630 52284630 G T ANKRD33 Missense_Mutation p.Q300H 0.12 deleterious(0.01) probably_damaging(0.986) TCGA-MP-A4TC-01 12 78604198 78604198 C A NAV3 Silent p.L2331L 0.34 TCGA-MP-A4TC-01 12 97084906 97084906 G T C12orf55 Missense_Mutation p.G2028C 0.12 deleterious(0.02) benign(0.01) TCGA-MP-A4TC-01 13 109475580 109475580 C G MYO16 Missense_Mutation p.P329A 0.23 tolerated(0.05) benign(0.146) TCGA-MP-A4TC-01 13 19748132 19748132 G T TUBA3C Nonsense_Mutation p.Y408* 0.24 TCGA-MP-A4TC-01 13 28589810 28589810 G T FLT3 Missense_Mutation p.P857H 0.22 deleterious(0) probably_damaging(1) TCGA-MP-A4TC-01 13 33017743 33017743 C A N4BP2L2 Missense_Mutation p.D311Y 0.32 deleterious(0) possibly_damaging(0.77) TCGA-MP-A4TC-01 13 50065878 50065878 G T SETDB2 Missense_Mutation p.A685S 0.19 deleterious(0) probably_damaging(1) TCGA-MP-A4TC-01 13 79175493 79175493 C A POU4F1 3'UTR 0.26 TCGA-MP-A4TC-01 13 79175494 79175494 C A POU4F1 3'UTR 0.32 TCGA-MP-A4TC-01 14 106866430 106866430 C A IGHV3-38 Silent p.T108T 0.25 TCGA-MP-A4TC-01 14 45473548 45473548 G T FAM179B Missense_Mutation p.D875Y 0.24 deleterious(0) possibly_damaging(0.691) TCGA-MP-A4TC-01 14 70926539 70926539 T C ADAM21 3'UTR 0.31 TCGA-MP-A4TC-01 14 74179744 74179744 C T PNMA1 Missense_Mutation p.R200Q 0.32 deleterious(0.04) probably_damaging(0.975) TCGA-MP-A4TC-01 14 80669252 80669252 C A DIO2 Missense_Mutation p.R237L 0.22 tolerated(0.09) benign(0.081) TCGA-MP-A4TC-01 14 86088227 86088227 C A FLRT2 Silent p.T123T 0.17 TCGA-MP-A4TC-01 15 101120467 101120467 C A LINS Splice_Site p.X163_splice 0.26 TCGA-MP-A4TC-01 15 22383492 22383492 C A OR4N4 3'UTR 0.40 TCGA-MP-A4TC-01 15 34168175 34168175 C A AVEN Missense_Mutation p.R156L 0.36 deleterious(0) probably_damaging(1) TCGA-MP-A4TC-01 15 50534988 50534988 C A HDC Silent p.R486R 0.17 TCGA-MP-A4TC-01 16 1866941 1866941 C A HAGH Missense_Mutation p.V234L 0.21 deleterious(0.03) benign(0.136) TCGA-MP-A4TC-01 16 22120870 22120870 C A VWA3A Missense_Mutation p.P184H 0.11 tolerated(0.18) benign(0.213) TCGA-MP-A4TC-01 16 31422824 31422824 C A ITGAD Missense_Mutation p.P565T 0.07 tolerated(0.12) benign(0.01) TCGA-MP-A4TC-01 16 74455049 74455049 G T CLEC18B Silent p.A40A 0.30 TCGA-MP-A4TC-01 16 82033595 82033595 C G SDR42E1 Missense_Mutation p.R101S 0.27 tolerated(0.08) benign(0.063) TCGA-MP-A4TC-01 17 19316283 19316283 G T RNF112 Silent p.L138L 0.30 TCGA-MP-A4TC-01 17 43198595 43198595 G A PLCD3 Missense_Mutation p.A103V 0.18 deleterious(0.02) possibly_damaging(0.626) TCGA-MP-A4TC-01 17 66343280 66343280 G T ARSG Nonsense_Mutation p.G141* 0.36 TCGA-MP-A4TC-01 17 7010563 7010563 G C ASGR2 Silent p.L166L 0.27 TCGA-MP-A4TC-01 17 7193723 7193723 T A YBX2 Silent p.A197A 0.39 TCGA-MP-A4TC-01 17 73568119 73568119 C G LLGL2 Missense_Mutation p.L812V 0.33 tolerated(0.36) benign(0.164) TCGA-MP-A4TC-01 17 7578454 7578454 G A TP53 Missense_Mutation p.A159V 0.29 deleterious(0) possibly_damaging(0.9) TCGA-MP-A4TC-01 18 10697878 10697878 C T PIEZO2 Missense_Mutation p.G2119D 0.28 tolerated(0.08) probably_damaging(0.937) TCGA-MP-A4TC-01 18 28649018 28649018 T A DSC2 Missense_Mutation p.I784F 0.18 tolerated(0.88) benign(0.06) TCGA-MP-A4TC-01 18 48581198 48581198 G T SMAD4 Nonsense_Mutation p.G168* 0.30 TCGA-MP-A4TC-01 18 48703429 48703429 C T MEX3C Silent p.A424A 0.29 TCGA-MP-A4TC-01 19 10461800 10461800 C T TYK2 Missense_Mutation p.M1119I 0.35 tolerated(0.08) benign(0.008) TCGA-MP-A4TC-01 19 19249247 19249247 G A TMEM161A 5'UTR 0.60 TCGA-MP-A4TC-01 19 19369375 19369375 G T HAPLN4 Silent p.A258A 0.21 TCGA-MP-A4TC-01 19 39379730 39379730 C A SIRT2 Silent p.T166T 0.36 TCGA-MP-A4TC-01 19 40366203 40366203 C A FCGBP Silent p.P4677P 0.49 TCGA-MP-A4TC-01 19 41081484 41081484 C A SPTBN4 3'UTR 0.30 TCGA-MP-A4TC-01 19 43439730 43439730 C A PSG7 Missense_Mutation p.G86C 0.43 deleterious(0.03) possibly_damaging(0.79) TCGA-MP-A4TC-01 19 44152994 44152994 C A PLAUR 3'UTR 0.35 TCGA-MP-A4TC-01 19 4529375 4529375 C A PLIN5 Intron 0.25 TCGA-MP-A4TC-01 19 52469189 52469189 G A ZNF350 Missense_Mutation p.H173Y 0.40 tolerated(0.35) benign(0.009) TCGA-MP-A4TC-01 19 54849295 54849295 G T LILRA4 Missense_Mutation p.N189K 0.08 deleterious(0.02) benign(0.071) TCGA-MP-A4TC-01 19 55696967 55696967 C A PTPRH Missense_Mutation p.V989F 0.32 probably_damaging(0.997) TCGA-MP-A4TC-01 19 57133350 57133350 A T ZNF71 Missense_Mutation p.H232L 0.38 deleterious(0) probably_damaging(0.996) TCGA-MP-A4TC-01 19 9064900 9064900 C T MUC16 Missense_Mutation p.D7516N 0.24 unknown(0) TCGA-MP-A4TC-01 1 101705059 101705059 C - S1PR1 Frame_Shift_Del p.L174Wfs*62 0.13 TCGA-MP-A4TC-01 1 103355061 103355061 C A COL11A1 Missense_Mutation p.D1472Y 0.18 unknown(0) TCGA-MP-A4TC-01 1 10689760 10689760 G T PEX14 Nonsense_Mutation p.E284* 0.19 TCGA-MP-A4TC-01 1 108185291 108185291 C A VAV3 Missense_Mutation p.G622W 0.19 deleterious(0) probably_damaging(0.993) TCGA-MP-A4TC-01 1 109394792 109394792 G T AKNAD1 Silent p.T165T 0.19 TCGA-MP-A4TC-01 1 111216798 111216798 G C KCNA3 Missense_Mutation p.P212A 0.24 deleterious(0) probably_damaging(0.915) TCGA-MP-A4TC-01 1 115144193 115144193 C A DENND2C Missense_Mutation p.G584V 0.25 deleterious(0) probably_damaging(1) TCGA-MP-A4TC-01 1 118485096 118485096 G T WDR3 Missense_Mutation p.E342D 0.11 tolerated(0.19) benign(0.001) TCGA-MP-A4TC-01 1 12785630 12785630 G T AADACL3 Missense_Mutation p.R240S 0.26 deleterious(0.04) possibly_damaging(0.742) TCGA-MP-A4TC-01 1 12921355 12921355 C T PRAMEF2 Silent p.F382F 0.08 TCGA-MP-A4TC-01 1 144816486 144816486 G T NBPF9 Missense_Mutation p.A206S 0.08 tolerated(0.1) probably_damaging(0.98) TCGA-MP-A4TC-01 1 144881511 144881511 C G PDE4DIP Missense_Mutation p.D1229H 0.10 deleterious(0) probably_damaging(0.996) TCGA-MP-A4TC-01 1 149908090 149908090 C A MTMR11 Missense_Mutation p.R33S 0.24 tolerated(0.56) benign(0.003) TCGA-MP-A4TC-01 1 152882805 152882805 C A IVL Missense_Mutation p.Q178K 0.21 tolerated(0.06) unknown(0) TCGA-MP-A4TC-01 1 153916758 153916758 A T DENND4B Silent p.V31V 0.17 TCGA-MP-A4TC-01 1 155581973 155581973 G T MSTO1 Missense_Mutation p.G227C 0.26 deleterious(0) probably_damaging(1) TCGA-MP-A4TC-01 1 155649305 155649305 T G YY1AP1 Splice_Site p.X146_splice 0.19 TCGA-MP-A4TC-01 1 158326366 158326366 G T CD1E Missense_Mutation p.R328L 0.09 tolerated(0.05) benign(0.001) TCGA-MP-A4TC-01 1 158639347 158639347 C A SPTA1 Missense_Mutation p.A562S 0.20 tolerated(0.73) benign(0.07) TCGA-MP-A4TC-01 1 159275777 159275777 G T FCER1A Splice_Site p.X111_splice 0.16 TCGA-MP-A4TC-01 1 159779229 159779229 G T FCRL6 Silent p.G214G 0.17 TCGA-MP-A4TC-01 1 161049571 161049571 T A PVRL4 Missense_Mutation p.H83L 0.20 deleterious(0) possibly_damaging(0.632) TCGA-MP-A4TC-01 1 161200824 161200824 G T NR1I3 Intron 0.27 TCGA-MP-A4TC-01 1 165601488 165601488 G T MGST3 Intron 0.20 TCGA-MP-A4TC-01 1 170961334 170961334 G T MROH9 Missense_Mutation p.C353F 0.23 deleterious(0) benign(0.002) TCGA-MP-A4TC-01 1 171509394 171509394 G C PRRC2C Missense_Mutation p.G928A 0.12 unknown(0) TCGA-MP-A4TC-01 1 173941763 173941763 C A RC3H1 Missense_Mutation p.A369S 0.18 tolerated(0.1) possibly_damaging(0.58) TCGA-MP-A4TC-01 1 175365809 175365809 G T TNR Missense_Mutation p.Q371K 0.21 tolerated(0.3) benign(0.089) TCGA-MP-A4TC-01 1 176992581 176992581 C A ASTN1 Missense_Mutation p.R466L 0.46 deleterious(0) probably_damaging(0.996) TCGA-MP-A4TC-01 1 177250067 177250067 C T BRINP2 Silent p.V585V 0.11 TCGA-MP-A4TC-01 1 182026466 182026466 G C ZNF648 Missense_Mutation p.A227G 0.18 tolerated(0.15) benign(0.002) TCGA-MP-A4TC-01 1 186302287 186302287 G T TPR Silent p.R1808R 0.24 TCGA-MP-A4TC-01 1 190423854 190423854 C A BRINP3 Missense_Mutation p.R56L 0.17 deleterious(0.04) possibly_damaging(0.552) TCGA-MP-A4TC-01 1 196342309 196342309 G C KCNT2 Missense_Mutation p.S455C 0.20 deleterious(0) possibly_damaging(0.739) TCGA-MP-A4TC-01 1 197097663 197097663 C A ASPM Missense_Mutation p.V965F 0.15 deleterious(0) probably_damaging(0.979) TCGA-MP-A4TC-01 1 197160928 197160928 T A ZBTB41 Nonsense_Mutation p.R408* 0.18 TCGA-MP-A4TC-01 1 202163291 202163291 C A LGR6 Silent p.S58S 0.32 TCGA-MP-A4TC-01 1 203186229 203186229 G A CHIT1 Missense_Mutation p.L397F 0.20 tolerated(0.4) benign(0.051) TCGA-MP-A4TC-01 1 215408306 215408306 G T KCNK2 Missense_Mutation p.A367S 0.21 tolerated(0.85) benign(0.007) TCGA-MP-A4TC-01 1 216420435 216420435 C A USH2A Missense_Mutation p.E767D 0.17 benign(0.033) TCGA-MP-A4TC-01 1 228528892 228528892 T C OBSCN Missense_Mutation p.C6889R 0.31 possibly_damaging(0.868) TCGA-MP-A4TC-01 1 228582417 228582417 C A TRIM11 Missense_Mutation p.A466S 0.31 tolerated_low_confidence(0.29) benign(0.022) TCGA-MP-A4TC-01 1 232002370 232002370 T A DISC1 3'UTR 0.18 TCGA-MP-A4TC-01 1 23405517 23405517 G A KDM1A Silent p.T634T 0.26 TCGA-MP-A4TC-01 1 236766524 236766524 T - HEATR1 Frame_Shift_Del p.I99Ffs*19 0.14 TCGA-MP-A4TC-01 1 240255697 240255697 T C FMN2 Silent p.D96D 0.17 TCGA-MP-A4TC-01 1 241667498 241667498 G A FH Missense_Mutation p.H318Y 0.15 deleterious(0) probably_damaging(0.989) TCGA-MP-A4TC-01 1 241798177 241798177 T A CHML Missense_Mutation p.M298L 0.16 deleterious(0.01) possibly_damaging(0.543) TCGA-MP-A4TC-01 1 248112303 248112303 C A OR2L8 Silent p.I48I 0.20 TCGA-MP-A4TC-01 1 27092812 27092812 G T ARID1A Nonsense_Mutation p.G945* 0.12 TCGA-MP-A4TC-01 1 2938455 2938455 C A ACTRT2 Missense_Mutation p.L69M 0.26 deleterious(0) probably_damaging(0.989) TCGA-MP-A4TC-01 1 36553655 36553655 C A TEKT2 Missense_Mutation p.D387E 0.26 tolerated(0.47) possibly_damaging(0.826) TCGA-MP-A4TC-01 1 39341675 39341675 A - GJA9 Frame_Shift_Del p.R33Efs*7 0.25 TCGA-MP-A4TC-01 1 43784954 43784954 C G TIE1 Missense_Mutation p.L991V 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-MP-A4TC-01 1 46978254 46978254 C A DMBX1 3'UTR 0.22 TCGA-MP-A4TC-01 1 53542950 53542950 C A PODN Missense_Mutation p.L272M 0.18 tolerated(0.37) benign(0.129) TCGA-MP-A4TC-01 1 6169915 6169915 G T CHD5 Missense_Mutation p.Q1840K 0.28 deleterious(0.02) possibly_damaging(0.705) TCGA-MP-A4TC-01 1 62740092 62740092 G T KANK4 Silent p.V228V 0.14 TCGA-MP-A4TC-01 1 70339372 70339372 A G LRRC7 Intron 0.33 TCGA-MP-A4TC-01 1 99470015 99470015 C T LPPR5 Silent p.L71L 0.12 TCGA-MP-A4TC-01 20 23064582 23064582 C T CD93 3'UTR 0.20 TCGA-MP-A4TC-01 20 37126103 37126103 T G RALGAPB Nonsense_Mutation p.L166* 0.09 TCGA-MP-A4TC-01 20 56083663 56083663 C A CTCFL Missense_Mutation p.W558L 0.25 tolerated(0.2) benign(0.057) TCGA-MP-A4TC-01 20 56090726 56090726 A G CTCFL Intron 0.28 TCGA-MP-A4TC-01 20 60419732 60419732 C A CDH4 Silent p.S195S 0.23 TCGA-MP-A4TC-01 21 11098851 11098851 C A BAGE2 RNA 0.07 TCGA-MP-A4TC-01 21 15882670 15882670 G C SAMSN1 Missense_Mutation p.F242L 0.12 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TC-01 21 19629022 19629022 A T CHODL Silent p.T92T 0.19 TCGA-MP-A4TC-01 21 30342994 30342994 C A LTN1 Missense_Mutation p.G398V 0.23 deleterious(0.01) probably_damaging(1) TCGA-MP-A4TC-01 21 30342995 30342995 C A LTN1 Missense_Mutation p.G398C 0.23 tolerated(0.1) probably_damaging(1) TCGA-MP-A4TC-01 21 40630520 40630520 A G BRWD1 Missense_Mutation p.L655P 0.37 deleterious(0) probably_damaging(0.991) TCGA-MP-A4TC-01 21 45971117 45971117 G A KRTAP10-2 Silent p.C75C 0.22 TCGA-MP-A4TC-01 21 46086830 46086830 G T KRTAP12-2 5'UTR 0.25 TCGA-MP-A4TC-01 22 18075414 18075414 G C ATP6V1E1 3'UTR 0.24 TCGA-MP-A4TC-01 22 20977064 20977064 G T SMPD4P1 RNA 0.21 TCGA-MP-A4TC-01 22 30136684 30136684 G A ZMAT5 Missense_Mutation p.H76Y 0.17 deleterious(0) probably_damaging(0.965) TCGA-MP-A4TC-01 22 32841929 32841929 G A BPIFC Silent p.I143I 0.17 TCGA-MP-A4TC-01 22 38504295 38504295 G T BAIAP2L2 Missense_Mutation p.R61S 0.23 deleterious(0) benign(0.089) TCGA-MP-A4TC-01 22 39413824 39413824 C T APOBEC3C Silent p.C76C 0.24 TCGA-MP-A4TC-01 2 10917755 10917755 G A ATP6V1C2 Silent p.P290P 0.15 TCGA-MP-A4TC-01 2 128388849 128388849 C T MYO7B Missense_Mutation p.A1643V 0.20 tolerated(0.13) benign(0.01) TCGA-MP-A4TC-01 2 130832599 130832599 G T POTEF Missense_Mutation p.R816S 0.15 deleterious_low_confidence(0) possibly_damaging(0.669) TCGA-MP-A4TC-01 2 133489570 133489570 G A NCKAP5 Missense_Mutation p.P1728L 0.11 deleterious(0) probably_damaging(0.988) TCGA-MP-A4TC-01 2 149679792 149679792 C T KIF5C Silent p.V71V 0.23 TCGA-MP-A4TC-01 2 152322278 152322278 G C RIF1 Missense_Mutation p.A2082P 0.13 tolerated_low_confidence(0.24) benign(0.002) TCGA-MP-A4TC-01 2 152474831 152474831 C A NEB Silent p.P3678P 0.15 TCGA-MP-A4TC-01 2 152521350 152521350 C A NEB Missense_Mutation p.D1756Y 0.16 possibly_damaging(0.455) TCGA-MP-A4TC-01 2 152521351 152521351 C A NEB Missense_Mutation p.K1755N 0.17 possibly_damaging(0.816) TCGA-MP-A4TC-01 2 162735785 162735785 C G SLC4A10 Missense_Mutation p.P365A 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-MP-A4TC-01 2 167279814 167279814 G T SCN7A Silent p.A994A 0.10 TCGA-MP-A4TC-01 2 167279815 167279815 G T SCN7A Missense_Mutation p.A994D 0.10 tolerated(0.18) probably_damaging(0.971) TCGA-MP-A4TC-01 2 170103224 170103224 C A LRP2 Missense_Mutation p.G1061C 0.18 probably_damaging(0.928) TCGA-MP-A4TC-01 2 179430839 179430839 C A TTN Missense_Mutation p.A26674S 0.10 TCGA-MP-A4TC-01 2 182786887 182786887 A G SSFA2 Silent p.P1141P 0.16 TCGA-MP-A4TC-01 2 1926752 1926752 G A MYT1L Silent p.D263D 0.20 TCGA-MP-A4TC-01 2 198948520 198948520 C A PLCL1 Silent p.T93T 0.16 TCGA-MP-A4TC-01 2 209315508 209315508 G C PTH2R Silent p.V296V 0.09 TCGA-MP-A4TC-01 2 211342469 211342469 G A CPS1 5'UTR 0.20 TCGA-MP-A4TC-01 2 21255365 21255365 G T APOB Missense_Mutation p.P405T 0.16 probably_damaging(0.999) TCGA-MP-A4TC-01 2 220078673 220078673 C T ABCB6 Missense_Mutation p.G485S 0.13 tolerated(0.74) benign(0.001) TCGA-MP-A4TC-01 2 234627630 234627630 G T UGT1A4 Missense_Mutation p.G55V 0.21 deleterious(0) probably_damaging(1) TCGA-MP-A4TC-01 2 238247687 238247687 C A COL6A3 Missense_Mutation p.K2846N 0.11 unknown(0) TCGA-MP-A4TC-01 2 239039105 239039105 C T ESPNL Missense_Mutation p.P584S 0.36 tolerated_low_confidence(0.08) benign(0.011) TCGA-MP-A4TC-01 2 239141152 239141152 C A AC016757.3 5'Flank 0.20 TCGA-MP-A4TC-01 2 27800941 27800941 T A C2orf16 Missense_Mutation p.V501E 0.18 deleterious(0) benign(0.001) TCGA-MP-A4TC-01 2 33952349 33952349 C A AC009499.1 Intron 0.16 TCGA-MP-A4TC-01 2 3750099 3750099 G A ALLC Silent p.R374R 0.30 TCGA-MP-A4TC-01 2 38976798 38976798 G T SRSF7 Silent p.R87R 0.17 TCGA-MP-A4TC-01 2 43986102 43986102 T A PLEKHH2 Nonsense_Mutation p.C1335* 0.16 TCGA-MP-A4TC-01 2 47378566 47378566 T C C2orf61 Missense_Mutation p.N77S 0.17 tolerated(0.26) probably_damaging(0.919) TCGA-MP-A4TC-01 2 49210069 49210069 G T FSHR Missense_Mutation p.A217D 0.16 deleterious(0) possibly_damaging(0.599) TCGA-MP-A4TC-01 2 74042489 74042489 T C C2orf78 Missense_Mutation p.I380T 0.20 tolerated(0.56) benign(0.023) TCGA-MP-A4TC-01 2 90212219 90212219 C A IGKV3D-11 Missense_Mutation p.A104E 0.14 deleterious(0) probably_damaging(0.939) TCGA-MP-A4TC-01 2 95954277 95954277 C T PROM2 Missense_Mutation p.P794L 0.19 deleterious(0.03) probably_damaging(0.991) TCGA-MP-A4TC-01 2 96944367 96944367 G A SNRNP200 Silent p.I1802I 0.21 TCGA-MP-A4TC-01 3 10360953 10360953 G T SEC13 Intron 0.27 TCGA-MP-A4TC-01 3 122003307 122003307 G T CASR Missense_Mutation p.V846L 0.17 deleterious(0.01) probably_damaging(0.982) TCGA-MP-A4TC-01 3 13367381 13367381 G A NUP210 Missense_Mutation p.P1520S 0.30 tolerated(0.69) benign(0.009) TCGA-MP-A4TC-01 3 138665437 138665437 C A FOXL2 Missense_Mutation p.G43V 0.34 tolerated_low_confidence(0.29) unknown(0) TCGA-MP-A4TC-01 3 138668431 138668431 C A C3orf72 Missense_Mutation p.P57H 0.38 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-MP-A4TC-01 3 16254253 16254253 G T GALNT15 Missense_Mutation p.A459S 0.11 deleterious(0.03) probably_damaging(0.997) TCGA-MP-A4TC-01 3 180323570 180323570 G A TTC14 Missense_Mutation p.D292N 0.24 tolerated(0.11) possibly_damaging(0.632) TCGA-MP-A4TC-01 3 185364843 185364843 G A IGF2BP2 Silent p.V559V 0.20 TCGA-MP-A4TC-01 3 21706489 21706489 G A ZNF385D Silent p.A18A 0.25 TCGA-MP-A4TC-01 3 26751682 26751682 A T LRRC3B Missense_Mutation p.K173N 0.30 tolerated(0.29) benign(0.002) TCGA-MP-A4TC-01 3 51708435 51708435 G T TEX264 Missense_Mutation p.G39W 0.31 deleterious(0) probably_damaging(1) TCGA-MP-A4TC-01 3 64619204 64619204 C T ADAMTS9 Missense_Mutation p.D707N 0.24 tolerated(0.08) possibly_damaging(0.866) TCGA-MP-A4TC-01 3 9490102 9490102 G T SETD5 Missense_Mutation p.A712S 0.24 tolerated(0.73) benign(0.445) TCGA-MP-A4TC-01 3 97503893 97503893 G A ARL6 Missense_Mutation p.D117N 0.29 deleterious(0.04) benign(0.105) TCGA-MP-A4TC-01 3 98235627 98235627 C G CLDND1 Missense_Mutation p.G236A 0.16 deleterious(0) probably_damaging(1) TCGA-MP-A4TC-01 4 113352716 113352716 G C ALPK1 Missense_Mutation p.L671F 0.14 tolerated(0.5) benign(0.006) TCGA-MP-A4TC-01 4 11401266 11401266 C A HS3ST1 Missense_Mutation p.A122S 0.23 tolerated(0.34) probably_damaging(0.994) TCGA-MP-A4TC-01 4 123665068 123665068 G T BBS12 Missense_Mutation p.R674L 0.14 deleterious(0) probably_damaging(1) TCGA-MP-A4TC-01 4 147204395 147204395 C T SLC10A7 Missense_Mutation p.A266T 0.17 tolerated(0.14) benign(0.295) TCGA-MP-A4TC-01 4 155225908 155225908 C - DCHS2 Frame_Shift_Del p.E1385Kfs*12 0.16 TCGA-MP-A4TC-01 4 156273849 156273849 T A MAP9 Nonsense_Mutation p.K574* 0.24 TCGA-MP-A4TC-01 4 158142073 158142073 G A GRIA2 5'UTR 0.15 TCGA-MP-A4TC-01 4 164393095 164393095 G A TKTL2 Nonsense_Mutation p.Q598* 0.19 TCGA-MP-A4TC-01 4 166976399 166976399 G T TLL1 Missense_Mutation p.G566W 0.18 deleterious(0) probably_damaging(1) TCGA-MP-A4TC-01 4 173232881 173232881 C G GALNTL6 Missense_Mutation p.L122V 0.14 tolerated(0.57) benign(0.096) TCGA-MP-A4TC-01 4 173803978 173803978 C A GALNTL6 Silent p.R321R 0.19 TCGA-MP-A4TC-01 4 173873260 173873260 A T GALNTL6 Missense_Mutation p.R408W 0.13 deleterious(0) probably_damaging(0.985) TCGA-MP-A4TC-01 4 177241174 177241174 G A SPCS3 5'UTR 0.18 TCGA-MP-A4TC-01 4 187175751 187175751 G T KLKB1 Silent p.L441L 0.10 TCGA-MP-A4TC-01 4 38776785 38776785 G A TLR10 Missense_Mutation p.H143Y 0.14 deleterious(0.01) possibly_damaging(0.556) TCGA-MP-A4TC-01 4 39482431 39482431 C T LIAS 3'Flank 0.19 TCGA-MP-A4TC-01 4 46053634 46053634 A G GABRG1 Missense_Mutation p.M313T 0.19 deleterious(0) probably_damaging(0.968) TCGA-MP-A4TC-01 4 5687126 5687126 C A EVC2 Missense_Mutation p.A263S 0.11 deleterious(0) probably_damaging(0.978) TCGA-MP-A4TC-01 4 70723302 70723302 T C SULT1E1 Missense_Mutation p.K21E 0.25 tolerated(0.38) benign(0.006) TCGA-MP-A4TC-01 4 87653868 87653868 G C PTPN13 Missense_Mutation p.A603P 0.11 deleterious(0) probably_damaging(1) TCGA-MP-A4TC-01 4 87653869 87653869 C A PTPN13 Missense_Mutation p.A603E 0.11 deleterious(0) probably_damaging(1) TCGA-MP-A4TC-01 4 89198288 89198288 T C PPM1K Intron 0.11 TCGA-MP-A4TC-01 4 89576424 89576424 G C HERC3 Missense_Mutation p.G293R 0.22 deleterious(0) probably_damaging(0.969) TCGA-MP-A4TC-01 5 110730469 110730469 G T CAMK4 Nonsense_Mutation p.E150* 0.35 TCGA-MP-A4TC-01 5 11117651 11117651 G T CTNND2 Missense_Mutation p.R730S 0.51 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TC-01 5 140250843 140250843 G A PCDHA11 Missense_Mutation p.A719T 0.29 deleterious_low_confidence(0) benign(0.18) TCGA-MP-A4TC-01 5 140720438 140720438 G T PCDHGA2 Missense_Mutation p.D634Y 0.26 deleterious_low_confidence(0) possibly_damaging(0.628) TCGA-MP-A4TC-01 5 140731921 140731921 C G PCDHGB1 Silent p.L698L 0.25 TCGA-MP-A4TC-01 5 141019127 141019127 C G RELL2 Missense_Mutation p.S138R 0.24 tolerated(0.43) benign(0.001) TCGA-MP-A4TC-01 5 159821596 159821607 ATGAAATTTATT - C5orf54 In_Frame_Del p.I298_I301del 0.21 TCGA-MP-A4TC-01 5 16067750 16067750 G T MARCH11 Missense_Mutation p.P347T 0.17 tolerated(0.06) benign(0.024) TCGA-MP-A4TC-01 5 16475069 16475069 G A FAM134B Silent p.I425I 0.14 TCGA-MP-A4TC-01 5 22142591 22142591 C G CDH12 Intron 0.12 TCGA-MP-A4TC-01 5 24493018 24493018 C A CDH10 Missense_Mutation p.S511I 0.36 deleterious(0) probably_damaging(0.99) TCGA-MP-A4TC-01 5 32072266 32072266 G A PDZD2 Splice_Site p.X857_splice 0.10 TCGA-MP-A4TC-01 5 32101285 32101285 G C PDZD2 Missense_Mutation p.D2765H 0.13 deleterious(0) probably_damaging(1) TCGA-MP-A4TC-01 5 33577118 33577118 G T ADAMTS12 Missense_Mutation p.P1005T 0.40 deleterious(0.05) possibly_damaging(0.461) TCGA-MP-A4TC-01 5 35954354 35954354 C A UGT3A1 Missense_Mutation p.G508C 0.14 tolerated(0.08) probably_damaging(0.987) TCGA-MP-A4TC-01 5 43039511 43039511 T G ANXA2R 3'UTR 0.12 TCGA-MP-A4TC-01 5 7892876 7892876 C T MTRR Silent p.V496V 0.10 TCGA-MP-A4TC-01 5 86672758 86672758 C T RASA1 Nonsense_Mutation p.R749* 0.29 TCGA-MP-A4TC-01 5 94956253 94956253 G A GPR150 Missense_Mutation p.A92T 0.33 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TC-01 6 102376391 102376391 G A GRIK2 Missense_Mutation p.A657T 0.37 deleterious(0) probably_damaging(1) TCGA-MP-A4TC-01 6 117113985 117113985 G T GPRC6A Missense_Mutation p.L701I 0.22 tolerated(0.2) possibly_damaging(0.491) TCGA-MP-A4TC-01 6 117113986 117113986 G T GPRC6A Nonsense_Mutation p.C700* 0.22 TCGA-MP-A4TC-01 6 138576586 138576586 C T KIAA1244 Missense_Mutation p.P262S 0.25 deleterious(0) probably_damaging(0.974) TCGA-MP-A4TC-01 6 150005698 150005698 T A LATS1 Missense_Mutation p.Q176L 0.35 deleterious_low_confidence(0) benign(0.4) TCGA-MP-A4TC-01 6 17292270 17292270 G A RBM24 Missense_Mutation p.A211T 0.27 tolerated(0.36) possibly_damaging(0.502) TCGA-MP-A4TC-01 6 32023794 32023794 G A TNXB Silent p.T2767T 0.09 TCGA-MP-A4TC-01 6 32184943 32184943 G C NOTCH4 Missense_Mutation p.C575W 0.32 deleterious(0) probably_damaging(1) TCGA-MP-A4TC-01 6 33382126 33382126 A T PHF1 Missense_Mutation p.S287C 0.18 tolerated(0.19) possibly_damaging(0.447) TCGA-MP-A4TC-01 6 36294809 36294809 C G C6orf222 Missense_Mutation p.E264Q 0.27 tolerated(0.11) possibly_damaging(0.859) TCGA-MP-A4TC-01 6 37254842 37254842 A G TBC1D22B Silent p.V287V 0.22 TCGA-MP-A4TC-01 6 43306724 43306724 T C ZNF318 Missense_Mutation p.Y1671C 0.30 benign(0.022) TCGA-MP-A4TC-01 6 51732801 51732801 C A PKHD1 Silent p.L2531L 0.21 TCGA-MP-A4TC-01 6 51774244 51774244 C T PKHD1 Missense_Mutation p.M2173I 0.30 deleterious(0) benign(0.01) TCGA-MP-A4TC-01 6 52660981 52660981 G T GSTA1 Missense_Mutation p.L91M 0.26 tolerated(0.16) benign(0.125) TCGA-MP-A4TC-01 6 55147281 55147281 G T HCRTR2 3'UTR 0.21 TCGA-MP-A4TC-01 6 70847634 70847634 G T COL19A1 Nonsense_Mutation p.E481* 0.29 TCGA-MP-A4TC-01 7 100184219 100184219 C T FBXO24 5'Flank 0.12 TCGA-MP-A4TC-01 7 101200769 101200769 C T COL26A1 Missense_Mutation p.P428S 0.12 tolerated_low_confidence(0.19) benign(0.043) TCGA-MP-A4TC-01 7 113558889 113558889 C A PPP1R3A Missense_Mutation p.D55Y 0.17 deleterious(0.02) possibly_damaging(0.827) TCGA-MP-A4TC-01 7 116165002 116165002 C - CAV1 5'UTR 0.17 TCGA-MP-A4TC-01 7 123092723 123092723 T A IQUB 3'UTR 0.14 TCGA-MP-A4TC-01 7 129093069 129093069 T C STRIP2 Silent p.G137G 0.21 TCGA-MP-A4TC-01 7 134346557 134346557 A T BPGM Missense_Mutation p.R100W 0.24 deleterious(0) probably_damaging(1) TCGA-MP-A4TC-01 7 136912709 136912709 C A PTN 3'UTR 0.19 TCGA-MP-A4TC-01 7 140111716 140111716 A - RAB19 Frame_Shift_Del p.I82Sfs*34 0.09 TCGA-MP-A4TC-01 7 142162144 142162144 T A TRBV6-6 Missense_Mutation p.Q44L 0.18 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TC-01 7 142459714 142459714 C G PRSS1 Missense_Mutation p.P97R 0.12 deleterious(0) possibly_damaging(0.812) TCGA-MP-A4TC-01 7 148288121 148288121 G T C7orf33 Missense_Mutation p.R35L 0.23 tolerated_low_confidence(0.15) benign(0.433) TCGA-MP-A4TC-01 7 148963547 148963547 C G ZNF783 Missense_Mutation p.A49G 0.18 deleterious(0) probably_damaging(0.995) TCGA-MP-A4TC-01 7 158449021 158449021 G A NCAPG2 Silent p.N773N 0.21 TCGA-MP-A4TC-01 7 21658759 21658759 G C DNAH11 Missense_Mutation p.L1437F 0.20 probably_damaging(1) TCGA-MP-A4TC-01 7 23682710 23682710 G A CCDC126 Silent p.T133T 0.18 TCGA-MP-A4TC-01 7 36552834 36552834 C A AOAH 3'UTR 0.16 TCGA-MP-A4TC-01 7 38505846 38505846 C A AMPH Missense_Mutation p.R198L 0.17 deleterious(0.01) probably_damaging(1) TCGA-MP-A4TC-01 7 48028461 48028461 C T SUN3 Missense_Mutation p.C293Y 0.25 tolerated(0.48) probably_damaging(0.981) TCGA-MP-A4TC-01 7 56006846 56006846 A T ZNF713 Missense_Mutation p.H147L 0.25 deleterious(0.04) benign(0.006) TCGA-MP-A4TC-01 7 72925073 72925073 C A BAZ1B Missense_Mutation p.A73S 0.21 tolerated(0.62) possibly_damaging(0.575) TCGA-MP-A4TC-01 7 83634789 83634789 A T SEMA3A Missense_Mutation p.M409K 0.17 deleterious(0) probably_damaging(0.997) TCGA-MP-A4TC-01 7 99808706 99808706 C T STAG3 Missense_Mutation p.P1104L 0.16 tolerated(0.1) benign(0.001) TCGA-MP-A4TC-01 8 104943521 104943521 C T RIMS2 Nonsense_Mutation p.Q759* 0.36 TCGA-MP-A4TC-01 8 113347694 113347694 T A CSMD3 Silent p.P2343P 0.44 TCGA-MP-A4TC-01 8 113599407 113599407 G T CSMD3 Missense_Mutation p.P1258Q 0.40 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TC-01 8 113988290 113988290 G T CSMD3 Missense_Mutation p.T373K 0.47 tolerated(0.4) benign(0) TCGA-MP-A4TC-01 8 116427059 116427059 C A TRPS1 Missense_Mutation p.S1026I 0.37 deleterious(0) probably_damaging(0.917) TCGA-MP-A4TC-01 8 144941167 144941167 C A EPPK1 Silent p.V2085V 0.41 TCGA-MP-A4TC-01 8 144992171 144992171 C A PLEC Missense_Mutation p.V4077L 0.50 possibly_damaging(0.7) TCGA-MP-A4TC-01 8 42611934 42611934 T C CHRNA6 Silent p.T136T 0.29 TCGA-MP-A4TC-01 8 49986622 49986622 C T C8orf22 Silent p.S20S 0.35 TCGA-MP-A4TC-01 8 77690659 77690659 C A ZFHX4 Nonsense_Mutation p.C1103* 0.41 TCGA-MP-A4TC-01 8 99962949 99962949 G T OSR2 Missense_Mutation p.R241I 0.28 deleterious(0) benign(0.024) TCGA-MP-A4TC-01 9 104239314 104239314 C A TMEM246 Missense_Mutation p.G21C 0.17 deleterious(0) possibly_damaging(0.634) TCGA-MP-A4TC-01 9 110249810 110249810 C A KLF4 Missense_Mutation p.G289C 0.17 deleterious(0.05) benign(0.432) TCGA-MP-A4TC-01 9 125486859 125486859 G A OR1L4 Silent p.Q197Q 0.12 TCGA-MP-A4TC-01 9 130107733 130107733 G C GARNL3 Missense_Mutation p.A470P 0.21 deleterious(0.01) benign(0.179) TCGA-MP-A4TC-01 9 130511803 130511803 C A SH2D3C Nonsense_Mutation p.E276* 0.24 TCGA-MP-A4TC-01 9 134074071 134074071 A T NUP214 Silent p.S1730S 0.21 TCGA-MP-A4TC-01 9 136384027 136384027 C - TMEM8C Frame_Shift_Del p.G123Afs*15 0.20 TCGA-MP-A4TC-01 9 139272247 139272247 C T SNAPC4 Silent p.L1344L 0.22 TCGA-MP-A4TC-01 9 17395013 17395013 G T CNTLN Missense_Mutation p.S854I 0.20 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TC-01 9 73240191 73240191 C T TRPM3 Silent p.E563E 0.23 TCGA-MP-A4TC-01 9 77377481 77377481 A C TRPM6 Missense_Mutation p.V1369G 0.17 tolerated_low_confidence(0.31) benign(0.001) TCGA-MP-A4TC-01 9 79634642 79634642 G T FOXB2 Missense_Mutation p.M24I 0.16 deleterious(0) unknown(0) TCGA-MP-A4TC-01 9 8485990 8485990 C A PTPRD Missense_Mutation p.V943F 0.12 tolerated(0.18) benign(0.121) TCGA-MP-A4TC-01 9 90584814 90584814 C A CDK20 Missense_Mutation p.G195V 0.16 deleterious(0) probably_damaging(0.982) TCGA-MP-A4TC-01 9 93375827 93375827 C A DIRAS2 Nonsense_Mutation p.E95* 0.20 TCGA-MP-A4TC-01 9 94485994 94485994 C A ROR2 Missense_Mutation p.D928Y 0.18 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-MP-A4TC-01 9 94485995 94485995 C T ROR2 Silent p.G927G 0.18 TCGA-MP-A4TC-01 X 10180534 10180534 A G CLCN4 Missense_Mutation p.M473V 0.25 deleterious(0) benign(0.101) TCGA-MP-A4TC-01 X 109963074 109963074 C A CHRDL1 Missense_Mutation p.R177L 0.30 tolerated(0.29) benign(0.003) TCGA-MP-A4TC-01 X 134994545 134994545 G T SAGE1 Missense_Mutation p.V863F 0.38 deleterious(0.05) benign(0.111) TCGA-MP-A4TC-01 X 139038792 139038792 C T CXorf66 Missense_Mutation p.D117N 0.38 deleterious(0.01) possibly_damaging(0.908) TCGA-MP-A4TC-01 X 140969493 140969493 C G MAGEC3 Missense_Mutation p.R274G 0.33 tolerated(1) possibly_damaging(0.569) TCGA-MP-A4TC-01 X 144906483 144906483 G A SLITRK2 3'UTR 0.30 TCGA-MP-A4TC-01 X 153068880 153068880 C T PDZD4 Missense_Mutation p.M746I 0.57 deleterious(0) benign(0.23) TCGA-MP-A4TC-01 X 153070161 153070161 C G PDZD4 Silent p.G319G 0.09 TCGA-MP-A4TC-01 X 1720178 1720178 C T AKAP17A Silent p.D593D 0.21 TCGA-MP-A4TC-01 X 22244622 22244622 T C PHEX Silent p.F654F 0.43 TCGA-MP-A4TC-01 X 27999258 27999258 G C DCAF8L1 Missense_Mutation p.T65R 0.40 tolerated(0.32) possibly_damaging(0.71) TCGA-MP-A4TC-01 X 3241716 3241716 C A MXRA5 Missense_Mutation p.K670N 0.38 deleterious(0.04) possibly_damaging(0.881) TCGA-MP-A4TC-01 X 34148479 34148480 - T FAM47A Frame_Shift_Ins p.H639Qfs*2 0.29 TCGA-MP-A4TC-01 X 44386527 44386527 G A FUNDC1 Nonsense_Mutation p.R116* 0.14 TCGA-MP-A4TC-01 X 69699100 69699100 G A DLG3 Silent p.R502R 0.44 TCGA-MP-A4TC-01 X 91134173 91134173 C A PCDH11X Silent p.I978I 0.33 TCGA-MP-A4TD-01 10 27539714 27539714 A - RP11-85G18.6 RNA 0.19 TCGA-MP-A4TD-01 10 29777611 29777611 G T SVIL Missense_Mutation p.L1423M 0.34 deleterious(0) probably_damaging(1) TCGA-MP-A4TD-01 10 61829653 61829653 T C ANK3 Silent p.S3662S 0.16 TCGA-MP-A4TD-01 11 1905162 1905162 C T LSP1 Missense_Mutation p.H295Y 0.11 deleterious_low_confidence(0.01) benign(0.288) TCGA-MP-A4TD-01 11 30033986 30033986 C A KCNA4 Silent p.R80R 0.23 TCGA-MP-A4TD-01 11 47364158 47364158 C - MYBPC3 Frame_Shift_Del p.G532Afs*23 0.23 TCGA-MP-A4TD-01 11 55321896 55321896 C T OR4C15 Silent p.C38C 0.07 TCGA-MP-A4TD-01 11 56043303 56043303 G C OR5T1 Silent p.G63G 0.08 TCGA-MP-A4TD-01 11 63398539 63398539 A G ATL3 Silent p.D504D 0.17 TCGA-MP-A4TD-01 11 64717893 64717893 G A C11orf85 Missense_Mutation p.R53C 0.17 deleterious(0) possibly_damaging(0.632) TCGA-MP-A4TD-01 11 69625448 69625448 G A FGF3 Silent p.C115C 0.24 TCGA-MP-A4TD-01 11 85445176 85445176 C T SYTL2 Missense_Mutation p.S398N 0.29 tolerated(0.26) benign(0.007) TCGA-MP-A4TD-01 12 105151376 105151376 A G CHST11 Missense_Mutation p.D285G 0.11 deleterious(0) probably_damaging(1) TCGA-MP-A4TD-01 12 23687282 23687282 A G SOX5 Silent p.H721H 0.17 TCGA-MP-A4TD-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.15 deleterious(0.04) probably_damaging(0.993) TCGA-MP-A4TD-01 12 32491827 32491827 T A BICD1 Missense_Mutation p.F893Y 0.11 tolerated_low_confidence(0.35) benign(0.001) TCGA-MP-A4TD-01 12 49415856 49415858 GAT - KMT2D In_Frame_Del p.I5497del 0.19 TCGA-MP-A4TD-01 12 99056506 99056506 G A APAF1 Missense_Mutation p.E293K 0.14 deleterious(0.01) possibly_damaging(0.713) TCGA-MP-A4TD-01 13 113719372 113719372 G T MCF2L Silent p.A243A 0.23 TCGA-MP-A4TD-01 14 105849203 105849203 G A PACS2 Silent p.A526A 0.09 TCGA-MP-A4TD-01 14 106805393 106805393 C G IGHV4-31 Missense_Mutation p.W57S 0.03 deleterious(0) probably_damaging(1) TCGA-MP-A4TD-01 14 57698288 57698288 C T EXOC5 Missense_Mutation p.A362T 0.20 tolerated(0.53) benign(0.004) TCGA-MP-A4TD-01 14 74874276 74874276 C A SYNDIG1L Missense_Mutation p.A227S 0.26 deleterious(0) probably_damaging(0.985) TCGA-MP-A4TD-01 14 74874277 74874277 C T SYNDIG1L Silent p.V226V 0.26 TCGA-MP-A4TD-01 14 93709111 93709111 T A BTBD7 Missense_Mutation p.Q969H 0.17 tolerated_low_confidence(0.12) benign(0) TCGA-MP-A4TD-01 15 45567713 45567713 G T SLC28A2 3'UTR 0.20 TCGA-MP-A4TD-01 15 78780596 78780596 C T IREB2 Silent p.A623A 0.27 TCGA-MP-A4TD-01 16 19184038 19184038 G A SYT17 Intron 0.20 TCGA-MP-A4TD-01 16 20335521 20335521 G A GP2 Missense_Mutation p.P51L 0.13 tolerated(0.08) benign(0.067) TCGA-MP-A4TD-01 16 20335522 20335522 G T GP2 Missense_Mutation p.P51T 0.14 tolerated(0.19) benign(0.067) TCGA-MP-A4TD-01 16 28989271 28989271 A C SPNS1 Missense_Mutation p.Y117S 0.20 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TD-01 16 31426269 31426269 G A ITGAD Missense_Mutation p.R747H 0.26 tolerated(0.06) benign(0.064) TCGA-MP-A4TD-01 16 4751474 4751474 G A ANKS3 Silent p.A360A 0.09 TCGA-MP-A4TD-01 16 67375936 67375936 T A LRRC36 Missense_Mutation p.F49L 0.14 tolerated(0.32) probably_damaging(0.994) TCGA-MP-A4TD-01 17 41926210 41926210 G A CD300LG Missense_Mutation p.E110K 0.25 tolerated(0.84) benign(0.01) TCGA-MP-A4TD-01 17 48186757 48186757 A G PDK2 Missense_Mutation p.Y359C 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-MP-A4TD-01 17 55962667 55962667 T C CUEDC1 Missense_Mutation p.M87V 0.13 deleterious(0) probably_damaging(0.962) TCGA-MP-A4TD-01 18 28991154 28991154 G C DSG4 Missense_Mutation p.A719P 0.19 tolerated(0.28) benign(0.007) TCGA-MP-A4TD-01 19 1207077 1207077 G - STK11 Frame_Shift_Del p.E57Kfs*7 0.30 TCGA-MP-A4TD-01 19 22940042 22940042 T C ZNF99 3'Flank 0.30 TCGA-MP-A4TD-01 19 23159797 23159797 T A ZNF728 Missense_Mutation p.K114N 0.04 tolerated(0.08) benign(0.415) TCGA-MP-A4TD-01 19 39214854 39214854 C T ACTN4 Missense_Mutation p.R584C 0.08 tolerated(0.18) probably_damaging(0.956) TCGA-MP-A4TD-01 19 41250511 41250511 C G C19orf54 Missense_Mutation p.R157P 0.14 deleterious(0.02) possibly_damaging(0.479) TCGA-MP-A4TD-01 19 51010941 51010941 G T JOSD2 Silent p.S54S 0.24 TCGA-MP-A4TD-01 19 51918586 51918586 G A SIGLEC10 Silent p.T393T 0.28 TCGA-MP-A4TD-01 1 152009496 152009496 C G S100A11 5'UTR 0.15 TCGA-MP-A4TD-01 1 152058135 152058135 C T TCHHL1 Missense_Mutation p.A675T 0.16 tolerated(0.36) benign(0.028) TCGA-MP-A4TD-01 1 152277431 152277431 C G FLG Missense_Mutation p.D3311H 0.16 unknown(0) TCGA-MP-A4TD-01 1 152659657 152659657 G T LCE2B 3'UTR 0.33 TCGA-MP-A4TD-01 1 170967428 170967428 G C MROH9 Intron 0.11 TCGA-MP-A4TD-01 1 171227255 171227255 C A FMO1 Missense_Mutation p.A10D 0.29 deleterious(0) probably_damaging(0.992) TCGA-MP-A4TD-01 1 175048576 175048576 G A TNN Missense_Mutation p.G173R 0.33 deleterious(0.01) benign(0.014) TCGA-MP-A4TD-01 1 196197422 196197422 C A KCNT2 Nonsense_Mutation p.E1114* 0.31 TCGA-MP-A4TD-01 1 197890681 197890681 G T LHX9 Missense_Mutation p.G209C 0.33 deleterious(0.02) possibly_damaging(0.712) TCGA-MP-A4TD-01 1 248570365 248570365 G T OR2T1 Missense_Mutation p.R357M 0.03 deleterious(0.02) possibly_damaging(0.873) TCGA-MP-A4TD-01 20 20243672 20243672 C A C20orf26 Silent p.R801R 0.20 TCGA-MP-A4TD-01 20 44639909 44639909 G T MMP9 Silent p.T259T 0.13 TCGA-MP-A4TD-01 20 62198566 62198566 C A HELZ2 Silent p.T715T 0.14 TCGA-MP-A4TD-01 20 7875872 7875872 C A HAO1 Splice_Site p.X241_splice 0.22 TCGA-MP-A4TD-01 21 28337622 28337622 G T ADAMTS5 Silent p.I363I 0.08 TCGA-MP-A4TD-01 21 30933956 30933956 C T GRIK1 Missense_Mutation p.G782E 0.12 deleterious(0.02) probably_damaging(1) TCGA-MP-A4TD-01 21 30953832 30953832 G T GRIK1 Missense_Mutation p.P609T 0.19 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TD-01 21 42748859 42748859 C T MX2 Missense_Mutation p.P9L 0.18 tolerated_low_confidence(0.17) benign(0.003) TCGA-MP-A4TD-01 2 141135788 141135788 C T LRP1B Nonsense_Mutation p.W3533* 0.12 TCGA-MP-A4TD-01 2 141135789 141135789 C A LRP1B Missense_Mutation p.W3533L 0.12 possibly_damaging(0.637) TCGA-MP-A4TD-01 2 169952102 169952102 C T DHRS9 Missense_Mutation p.S262F 0.11 tolerated(0.15) benign(0.04) TCGA-MP-A4TD-01 2 182781154 182781154 G T SSFA2 Missense_Mutation p.Q929H 0.09 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TD-01 2 207040991 207040991 C A GPR1 Silent p.L327L 0.12 TCGA-MP-A4TD-01 2 233759576 233759576 G T NGEF Missense_Mutation p.N293K 0.08 tolerated(0.23) benign(0.122) TCGA-MP-A4TD-01 2 3358370 3358370 T A TSSC1 Missense_Mutation p.D26V 0.18 deleterious(0) probably_damaging(0.954) TCGA-MP-A4TD-01 2 44428719 44428719 G C PPM1B Missense_Mutation p.M127I 0.11 tolerated(0.21) benign(0) TCGA-MP-A4TD-01 3 121414126 121414126 C A GOLGB1 Missense_Mutation p.Q1748H 0.34 benign(0.382) TCGA-MP-A4TD-01 3 126181064 126181064 C A ZXDC Splice_Site p.X481_splice 0.31 TCGA-MP-A4TD-01 4 141481127 141481127 C A UCP1 Missense_Mutation p.V283F 0.06 deleterious(0) possibly_damaging(0.734) TCGA-MP-A4TD-01 4 158091889 158091889 T C GLRB 3'UTR 0.11 TCGA-MP-A4TD-01 4 186515086 186515086 G A SORBS2 Nonsense_Mutation p.Q1130* 0.22 TCGA-MP-A4TD-01 4 70361502 70361502 C A UGT2B4 Silent p.V26V 0.04 TCGA-MP-A4TD-01 4 7069712 7069712 C A GRPEL1 Missense_Mutation p.L16F 0.07 tolerated(0.1) benign(0.002) TCGA-MP-A4TD-01 4 78652634 78652634 C A CNOT6L Missense_Mutation p.D311Y 0.22 deleterious(0) benign(0.44) TCGA-MP-A4TD-01 5 140531421 140531421 G A PCDHB6 Missense_Mutation p.R528H 0.04 tolerated(0.23) benign(0.017) TCGA-MP-A4TD-01 5 156921695 156921695 C G ADAM19 Missense_Mutation p.R568T 0.14 deleterious(0) probably_damaging(0.923) TCGA-MP-A4TD-01 5 176338362 176338362 C T UIMC1 Silent p.K542K 0.19 TCGA-MP-A4TD-01 5 38406983 38406983 C T EGFLAM Silent p.S294S 0.19 TCGA-MP-A4TD-01 6 159239192 159239192 T C EZR 5'UTR 0.23 TCGA-MP-A4TD-01 6 165715557 165715557 C T C6orf118 Missense_Mutation p.R85Q 0.20 tolerated(0.07) benign(0.176) TCGA-MP-A4TD-01 7 110763695 110763695 G - LRRN3 Frame_Shift_Del p.I291* 0.17 TCGA-MP-A4TD-01 7 123516999 123516999 C T HYAL4 Silent p.D412D 0.24 TCGA-MP-A4TD-01 7 141796180 141796180 G C MGAM Missense_Mutation p.G1657R 0.12 deleterious(0) probably_damaging(1) TCGA-MP-A4TD-01 7 142143882 142143882 C G TRBV6-7 Missense_Mutation p.M38I 0.05 tolerated(0.21) benign(0.137) TCGA-MP-A4TD-01 7 48313691 48313691 A T ABCA13 Silent p.T1476T 0.08 TCGA-MP-A4TD-01 8 124664963 124664963 C A KLHL38 Silent p.R68R 0.44 TCGA-MP-A4TD-01 8 133899345 133899345 A T TG Missense_Mutation p.E576D 0.11 tolerated(0.06) benign(0.091) TCGA-MP-A4TD-01 8 17612089 17612089 C T MTUS1 Missense_Mutation p.G410R 0.28 deleterious(0) benign(0.047) TCGA-MP-A4TD-01 8 51503459 51503459 C A SNTG1 Missense_Mutation p.N277K 0.09 tolerated(0.28) benign(0.065) TCGA-MP-A4TD-01 8 52773540 52773540 G A PCMTD1 Missense_Mutation p.H58Y 0.06 deleterious(0.02) probably_damaging(0.953) TCGA-MP-A4TD-01 8 57079623 57079623 G - PLAG1 Frame_Shift_Del p.L228* 0.11 TCGA-MP-A4TD-01 8 69136826 69136826 G T PREX2 Missense_Mutation p.L1580F 0.09 deleterious(0) benign(0.168) TCGA-MP-A4TD-01 8 88886298 88886298 T G DCAF4L2 5'Flank 0.16 TCGA-MP-A4TD-01 9 102691086 102691086 G T STX17 Missense_Mutation p.K50N 0.14 deleterious(0.01) benign(0.249) TCGA-MP-A4TD-01 9 121930200 121930200 A C BRINP1 Missense_Mutation p.F483C 0.06 deleterious(0) possibly_damaging(0.849) TCGA-MP-A4TD-01 9 127982816 127982816 A C RABEPK Splice_Site p.X122_splice 0.18 TCGA-MP-A4TD-01 9 130501170 130501170 A T SH2D3C Missense_Mutation p.V813E 0.33 deleterious(0) probably_damaging(0.942) TCGA-MP-A4TD-01 9 138011949 138011949 G T OLFM1 Silent p.L443L 0.09 TCGA-MP-A4TD-01 9 139910292 139910292 G A ABCA2 Missense_Mutation p.R1117W 0.10 deleterious(0) probably_damaging(1) TCGA-MP-A4TD-01 9 5787065 5787065 C G ERMP1 3'UTR 0.17 TCGA-MP-A4TD-01 X 145075810 145075810 A G MIR890 RNA 0.30 TCGA-MP-A4TD-01 X 54955036 54955036 G T TRO Missense_Mutation p.V627L 0.26 deleterious(0.03) unknown(0) TCGA-MP-A4TE-01 10 129847916 129847916 C T PTPRE Missense_Mutation p.R136W 0.23 deleterious(0) probably_damaging(1) TCGA-MP-A4TE-01 10 27423040 27423040 G T YME1L1 Silent p.R292R 0.28 TCGA-MP-A4TE-01 10 46967683 46967683 A T SYT15 Missense_Mutation p.Y132N 0.05 deleterious(0) probably_damaging(0.962) TCGA-MP-A4TE-01 10 56129019 56129019 T A PCDH15 Missense_Mutation p.H112L 0.18 tolerated(0.09) benign(0.105) TCGA-MP-A4TE-01 10 98760934 98760934 C A SLIT1 Missense_Mutation p.D1514Y 0.22 deleterious(0) probably_damaging(0.948) TCGA-MP-A4TE-01 11 102818723 102818723 T - MMP13 Frame_Shift_Del p.I370Yfs*13 0.19 TCGA-MP-A4TE-01 11 108549100 108549100 G A DDX10 Missense_Mutation p.G199D 0.21 deleterious(0) probably_damaging(1) TCGA-MP-A4TE-01 11 123756029 123756029 T A TMEM225 Missense_Mutation p.E35V 0.05 tolerated(0.05) benign(0.293) TCGA-MP-A4TE-01 11 125788526 125788526 C T DDX25 Missense_Mutation p.R348C 0.20 deleterious(0) probably_damaging(0.983) TCGA-MP-A4TE-01 11 1642785 1642785 C A KRTAP5-4 Missense_Mutation p.C180F 0.25 deleterious_low_confidence(0) unknown(0) TCGA-MP-A4TE-01 11 21581913 21581913 T C NELL1 Silent p.S655S 0.19 TCGA-MP-A4TE-01 11 45672478 45672478 G A CHST1 5'UTR 0.59 TCGA-MP-A4TE-01 11 5020813 5020813 G - OR51L1 Frame_Shift_Del p.L202Ffs*3 0.15 TCGA-MP-A4TE-01 11 55682056 55682056 C T OR5W2 Translation_Start_Site p.M1? 0.42 deleterious(0.02) benign(0.259) TCGA-MP-A4TE-01 11 55945001 55945001 G A OR5J2 Missense_Mutation p.R303K 0.23 tolerated(0.91) benign(0.002) TCGA-MP-A4TE-01 11 62362104 62362104 C A MTA2 Missense_Mutation p.A526S 0.17 tolerated_low_confidence(0.54) benign(0.016) TCGA-MP-A4TE-01 11 62519805 62519805 G C ZBTB3 Missense_Mutation p.H494Q 0.25 deleterious(0) probably_damaging(1) TCGA-MP-A4TE-01 11 7817763 7817763 C A OR5P2 Missense_Mutation p.V243L 0.04 deleterious(0) benign(0.314) TCGA-MP-A4TE-01 11 92714945 92714945 C T MTNR1B Missense_Mutation p.R186C 0.12 deleterious(0.02) benign(0.373) TCGA-MP-A4TE-01 11 94599178 94599178 A C AMOTL1 Missense_Mutation p.K778T 0.22 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TE-01 12 100042229 100042229 G T FAM71C Missense_Mutation p.A93S 0.13 tolerated(0.52) benign(0.007) TCGA-MP-A4TE-01 12 1137214 1137214 G C ERC1 Missense_Mutation p.G49R 0.57 deleterious(0.03) possibly_damaging(0.703) TCGA-MP-A4TE-01 12 18854696 18854696 T A PLCZ1 Missense_Mutation p.K293N 0.12 deleterious(0) probably_damaging(0.993) TCGA-MP-A4TE-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.54 deleterious(0.04) probably_damaging(0.993) TCGA-MP-A4TE-01 12 29786199 29786199 C A TMTC1 Missense_Mutation p.D337Y 0.68 deleterious(0) probably_damaging(0.997) TCGA-MP-A4TE-01 12 41419053 41419053 C A CNTN1 Silent p.T875T 0.14 TCGA-MP-A4TE-01 12 52695847 52695847 C T KRT86 Silent p.S49S 0.14 TCGA-MP-A4TE-01 12 55688658 55688658 C T OR6C6 Missense_Mutation p.R120H 0.63 tolerated_low_confidence(0.05) benign(0.052) TCGA-MP-A4TE-01 12 57577918 57577918 C T LRP1 Missense_Mutation p.L1994F 0.12 probably_damaging(1) TCGA-MP-A4TE-01 12 58016619 58016619 G T SLC26A10 Missense_Mutation p.A281S 0.20 tolerated(0.31) possibly_damaging(0.796) TCGA-MP-A4TE-01 12 7551135 7551135 C G CD163L1 Missense_Mutation p.C485S 0.15 deleterious(0) probably_damaging(1) TCGA-MP-A4TE-01 12 75875810 75875810 A G GLIPR1 Missense_Mutation p.Y124C 0.19 deleterious(0) probably_damaging(1) TCGA-MP-A4TE-01 12 8084033 8084033 G A SLC2A3 Silent p.C106C 0.59 TCGA-MP-A4TE-01 13 38266439 38266439 C A TRPC4 Missense_Mutation p.A311S 0.25 tolerated(0.11) possibly_damaging(0.514) TCGA-MP-A4TE-01 14 23793490 23793490 C T PABPN1 Silent p.R291R 0.15 TCGA-MP-A4TE-01 14 77492110 77492110 T C IRF2BPL Missense_Mutation p.N676D 0.33 tolerated(0.11) unknown(0) TCGA-MP-A4TE-01 14 89163292 89163292 C G EML5 Missense_Mutation p.G748A 0.40 deleterious(0) probably_damaging(0.975) TCGA-MP-A4TE-01 14 93118469 93118469 A T RIN3 Missense_Mutation p.M359L 0.30 tolerated(0.36) benign(0.024) TCGA-MP-A4TE-01 15 74836697 74836697 A G ARID3B Silent p.L140L 0.32 TCGA-MP-A4TE-01 15 74919993 74919993 G A CLK3 Silent p.P490P 0.25 TCGA-MP-A4TE-01 16 1509122 1509122 C A CLCN7 Missense_Mutation p.V221L 0.26 tolerated(0.13) benign(0.279) TCGA-MP-A4TE-01 16 16173332 16173332 C T ABCC1 Silent p.I704I 0.14 TCGA-MP-A4TE-01 16 28922453 28922453 G C RABEP2 Missense_Mutation p.D314E 0.27 tolerated(0.31) benign(0.001) TCGA-MP-A4TE-01 16 2980841 2980841 G A FLYWCH1 Silent p.L251L 0.14 TCGA-MP-A4TE-01 16 30566485 30566485 G A ZNF764 3'UTR 0.19 TCGA-MP-A4TE-01 16 46729524 46729525 - A ORC6 Frame_Shift_Ins p.A170Sfs*4 0.20 TCGA-MP-A4TE-01 16 58528891 58528891 G A NDRG4 Silent p.L52L 0.20 TCGA-MP-A4TE-01 16 61687617 61687617 G T CDH8 Silent p.T765T 0.45 TCGA-MP-A4TE-01 17 45886269 45886269 G T OSBPL7 Nonsense_Mutation p.S753* 0.58 TCGA-MP-A4TE-01 17 51902186 51902186 G T KIF2B Missense_Mutation p.V598F 0.07 tolerated(0.09) benign(0.071) TCGA-MP-A4TE-01 17 73132090 73132092 CTT - HN1 3'UTR 0.15 TCGA-MP-A4TE-01 17 73840388 73840388 G A UNC13D Missense_Mutation p.R11C 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-MP-A4TE-01 17 73900770 73900770 C A MRPL38 Missense_Mutation p.G33V 0.21 deleterious_low_confidence(0) probably_damaging(1) TCGA-MP-A4TE-01 17 73900774 73900774 G T MRPL38 Missense_Mutation p.L32M 0.22 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-MP-A4TE-01 17 76535859 76535859 C G DNAH17 Missense_Mutation p.R879P 0.10 benign(0.392) TCGA-MP-A4TE-01 18 14478711 14478711 G T CXADRP3 RNA 0.12 TCGA-MP-A4TE-01 18 30091811 30091812 - AA WBP11P1 RNA 0.14 TCGA-MP-A4TE-01 18 43330069 43330069 C A SLC14A1 3'UTR 0.31 TCGA-MP-A4TE-01 18 48500918 48500918 C T ELAC1 Silent p.S48S 0.11 TCGA-MP-A4TE-01 18 51750540 51750540 C T MBD2 Silent p.P130P 0.62 TCGA-MP-A4TE-01 19 10597393 10597393 C - KEAP1 Frame_Shift_Del p.V604Wfs*68 0.43 TCGA-MP-A4TE-01 19 10747091 10747091 G A SLC44A2 Silent p.L442L 0.46 TCGA-MP-A4TE-01 19 11353740 11353740 A T DOCK6 Missense_Mutation p.V492E 0.16 deleterious(0) possibly_damaging(0.459) TCGA-MP-A4TE-01 19 1221228 1221228 G T STK11 Missense_Mutation p.G251C 0.79 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TE-01 19 1230954 1230954 C T C19orf26 Missense_Mutation p.G434R 0.72 tolerated_low_confidence(0.18) benign(0) TCGA-MP-A4TE-01 19 19356206 19356206 G A NCAN Missense_Mutation p.G1193R 0.27 deleterious(0) probably_damaging(1) TCGA-MP-A4TE-01 19 3425170 3425170 C T NFIC Missense_Mutation p.T210M 0.30 tolerated(0.24) benign(0.23) TCGA-MP-A4TE-01 19 35630982 35630982 C A FXYD1 5'UTR 0.61 TCGA-MP-A4TE-01 19 44378155 44378155 C G ZNF404 Missense_Mutation p.E71Q 0.20 tolerated(0.25) probably_damaging(0.986) TCGA-MP-A4TE-01 19 46375619 46375619 C T FOXA3 Missense_Mutation p.P119L 0.25 deleterious(0) probably_damaging(1) TCGA-MP-A4TE-01 19 49641581 49641581 C T PPFIA3 Missense_Mutation p.S658F 0.66 deleterious(0.02) probably_damaging(0.949) TCGA-MP-A4TE-01 19 56156438 56156438 C G ZNF581 Missense_Mutation p.H167Q 0.24 deleterious(0) probably_damaging(0.996) TCGA-MP-A4TE-01 1 103405969 103405969 G T COL11A1 Missense_Mutation p.P1100T 0.71 unknown(0) TCGA-MP-A4TE-01 1 14107968 14107968 C T PRDM2 Silent p.S1226S 0.33 TCGA-MP-A4TE-01 1 145663350 145663350 A T RNF115 Missense_Mutation p.R137S 0.29 tolerated(0.38) benign(0.062) TCGA-MP-A4TE-01 1 161088957 161088957 C G NIT1 Missense_Mutation p.C44W 0.17 tolerated(0.16) benign(0) TCGA-MP-A4TE-01 1 1635300 1635300 C A CDK11A Missense_Mutation p.G625V 0.41 deleterious(0) unknown(0) TCGA-MP-A4TE-01 1 181702135 181702135 A C CACNA1E Silent p.P971P 0.16 TCGA-MP-A4TE-01 1 196759338 196759338 G A CFHR3 Silent p.S259S 0.15 TCGA-MP-A4TE-01 1 196762482 196762482 A G CFHR3 Missense_Mutation p.N278D 0.13 tolerated(0.59) benign(0.332) TCGA-MP-A4TE-01 1 203053044 203053044 G T MYOG Silent p.P223P 0.33 TCGA-MP-A4TE-01 1 203148531 203148531 A C CHI3L1 3'UTR 0.46 TCGA-MP-A4TE-01 1 220273896 220273896 G T IARS2 Missense_Mutation p.G152V 0.44 deleterious(0) probably_damaging(1) TCGA-MP-A4TE-01 1 226455689 226455689 C T LIN9 Missense_Mutation p.G278E 0.17 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TE-01 1 228582919 228582919 A T TRIM11 Silent p.P298P 0.21 TCGA-MP-A4TE-01 1 236917318 236917318 T G ACTN2 Silent p.R637R 0.27 TCGA-MP-A4TE-01 1 240370748 240370748 C A FMN2 Missense_Mutation p.P879Q 0.18 unknown(0) TCGA-MP-A4TE-01 1 243471358 243471358 C A SDCCAG8 Missense_Mutation p.L270I 0.16 deleterious(0.04) possibly_damaging(0.869) TCGA-MP-A4TE-01 1 247978703 247978703 A C OR14A16 Missense_Mutation p.L110R 0.12 deleterious(0) possibly_damaging(0.707) TCGA-MP-A4TE-01 1 6655607 6655607 C T KLHL21 Missense_Mutation p.A480T 0.29 tolerated(0.39) benign(0.013) TCGA-MP-A4TE-01 1 67519653 67519653 T A SLC35D1 Missense_Mutation p.E15V 0.65 tolerated_low_confidence(0.23) benign(0.012) TCGA-MP-A4TE-01 1 87045966 87045966 C G CLCA4 Missense_Mutation p.L900V 0.29 tolerated(0.21) benign(0.039) TCGA-MP-A4TE-01 20 16730539 16730539 G T OTOR Intron 0.27 TCGA-MP-A4TE-01 20 21376892 21376892 C T NKX2-4 Missense_Mutation p.R241Q 0.29 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TE-01 20 33874903 33874903 C T FAM83C Missense_Mutation p.R560Q 0.31 tolerated_low_confidence(1) benign(0.002) TCGA-MP-A4TE-01 20 43927090 43927090 C T MATN4 Silent p.T382T 0.19 TCGA-MP-A4TE-01 20 47863686 47863686 A G ZNFX1 3'UTR 0.50 TCGA-MP-A4TE-01 20 61950473 61950473 C A COL20A1 Silent p.P909P 0.19 TCGA-MP-A4TE-01 20 9495396 9495396 C T LAMP5 5'UTR 0.36 TCGA-MP-A4TE-01 20 9520107 9520107 G T PAK7 3'UTR 0.20 TCGA-MP-A4TE-01 21 15870823 15870823 C A SAMSN1 Nonsense_Mutation p.E355* 0.63 TCGA-MP-A4TE-01 21 39493332 39493332 C A DSCR4 Missense_Mutation p.L6F 0.36 possibly_damaging(0.765) TCGA-MP-A4TE-01 22 22316964 22316964 C G TOP3B Missense_Mutation p.E454D 0.62 tolerated(0.35) benign(0.1) TCGA-MP-A4TE-01 22 29517411 29517411 C T KREMEN1 Missense_Mutation p.T140M 0.42 deleterious(0.03) probably_damaging(0.994) TCGA-MP-A4TE-01 22 47393548 47393548 C G TBC1D22A Missense_Mutation p.Q382E 0.24 deleterious(0) probably_damaging(0.983) TCGA-MP-A4TE-01 2 125281904 125281904 G T CNTNAP5 Missense_Mutation p.W450L 0.30 deleterious(0) probably_damaging(1) TCGA-MP-A4TE-01 2 168102371 168102371 C A XIRP2 Missense_Mutation p.A1490D 0.50 probably_damaging(0.996) TCGA-MP-A4TE-01 2 175335284 175335284 C A GPR155 Splice_Site p.X287_splice 0.20 TCGA-MP-A4TE-01 2 175618415 175618415 G T CHRNA1 Silent p.I223I 0.38 TCGA-MP-A4TE-01 2 179545887 179545887 G C TTN Missense_Mutation p.P11087A 0.16 TCGA-MP-A4TE-01 2 179598558 179598558 G T TTN Silent p.T5186T 0.21 TCGA-MP-A4TE-01 2 187531903 187531903 C A ITGAV Missense_Mutation p.P758Q 0.30 tolerated(0.25) probably_damaging(0.974) TCGA-MP-A4TE-01 2 20174334 20174334 G A WDR35 Missense_Mutation p.H211Y 0.41 deleterious(0.04) benign(0.085) TCGA-MP-A4TE-01 2 219869128 219869128 C G CCDC108 Missense_Mutation p.V1701L 0.23 tolerated(0.29) benign(0.094) TCGA-MP-A4TE-01 2 242202218 242202218 C A HDLBP Missense_Mutation p.A120S 0.40 tolerated(0.44) benign(0.004) TCGA-MP-A4TE-01 2 33588493 33588493 G T LTBP1 Missense_Mutation p.C1436F 0.43 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TE-01 2 71797812 71797812 C T DYSF Missense_Mutation p.R1057W 0.29 deleterious(0.02) probably_damaging(0.963) TCGA-MP-A4TE-01 3 142151651 142151651 T C XRN1 Missense_Mutation p.R54G 0.23 deleterious(0) possibly_damaging(0.57) TCGA-MP-A4TE-01 3 16250090 16250090 G A GALNT15 Missense_Mutation p.G331E 0.24 deleterious(0) probably_damaging(1) TCGA-MP-A4TE-01 3 183887980 183887980 G T DVL3 Missense_Mutation p.G562V 0.46 tolerated(0.34) probably_damaging(0.988) TCGA-MP-A4TE-01 3 188406620 188406620 C T LPP Intron 0.43 TCGA-MP-A4TE-01 3 33896716 33896716 T A PDCD6IP Missense_Mutation p.V700D 0.22 deleterious(0) probably_damaging(0.969) TCGA-MP-A4TE-01 3 52248317 52248317 T G ALAS1 3'UTR 0.59 TCGA-MP-A4TE-01 3 52469787 52469787 C T SEMA3G Silent p.E727E 0.17 TCGA-MP-A4TE-01 3 55733405 55733405 C A ERC2 Splice_Site p.X949_splice 0.25 TCGA-MP-A4TE-01 3 62636610 62636610 C T CADPS Missense_Mutation p.R372H 0.21 deleterious(0.03) possibly_damaging(0.522) TCGA-MP-A4TE-01 3 73438977 73438977 C T PDZRN3 Missense_Mutation p.R469H 0.13 deleterious(0) benign(0.289) TCGA-MP-A4TE-01 3 74418510 74418510 A T CNTN3 Missense_Mutation p.I259N 0.25 deleterious(0) probably_damaging(1) TCGA-MP-A4TE-01 4 119475217 119475217 C A CEP170P1 RNA 0.20 TCGA-MP-A4TE-01 4 129783281 129783281 C T JADE1 Silent p.T468T 0.29 TCGA-MP-A4TE-01 4 134073609 134073609 G T PCDH10 Missense_Mutation p.G772C 0.17 tolerated(0.13) possibly_damaging(0.681) TCGA-MP-A4TE-01 4 3344676 3344676 G - RGS12 Frame_Shift_Del p.R633Gfs*43 0.39 TCGA-MP-A4TE-01 4 80327718 80327718 G T GK2 Missense_Mutation p.A546E 0.17 deleterious(0) possibly_damaging(0.792) TCGA-MP-A4TE-01 4 84216552 84216552 G A HPSE Missense_Mutation p.A526V 0.38 tolerated(0.05) possibly_damaging(0.756) TCGA-MP-A4TE-01 5 110428002 110428002 G T WDR36 Missense_Mutation p.G6C 0.29 deleterious_low_confidence(0.03) benign(0.005) TCGA-MP-A4TE-01 5 140167228 140167228 C T PCDHA1 Silent p.N451N 0.28 TCGA-MP-A4TE-01 5 167674260 167674260 G A TENM2 Missense_Mutation p.V2106I 0.24 tolerated(0.13) benign(0.015) TCGA-MP-A4TE-01 5 172659551 172659551 C T NKX2-5 3'UTR 0.39 TCGA-MP-A4TE-01 5 33461006 33461006 G C TARS Splice_Site p.X450_splice 0.27 TCGA-MP-A4TE-01 5 35910141 35910141 G A CAPSL Nonsense_Mutation p.Q118* 0.48 TCGA-MP-A4TE-01 5 7690864 7690864 A C ADCY2 Missense_Mutation p.I261L 0.10 tolerated(0.07) benign(0.005) TCGA-MP-A4TE-01 6 107955499 107955499 C T SOBP Missense_Mutation p.P484L 0.78 tolerated(0.63) possibly_damaging(0.905) TCGA-MP-A4TE-01 6 127797442 127797442 C T SOGA3 Missense_Mutation p.G577R 0.09 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TE-01 6 24437512 24437512 C T GPLD1 Missense_Mutation p.V676M 0.14 tolerated(0.13) benign(0.032) TCGA-MP-A4TE-01 6 46605583 46605583 C A CYP39A1 Missense_Mutation p.L207F 0.05 deleterious(0.01) possibly_damaging(0.905) TCGA-MP-A4TE-01 6 52622776 52622776 C G GSTA2 Splice_Site 0.27 TCGA-MP-A4TE-01 7 100211254 100211254 G T MOSPD3 Nonsense_Mutation p.G146* 0.23 TCGA-MP-A4TE-01 7 129962506 129962506 A T CPA4 Missense_Mutation p.N419I 0.48 deleterious(0) possibly_damaging(0.493) TCGA-MP-A4TE-01 7 131853219 131853219 C T PLXNA4 Missense_Mutation p.S1377N 0.16 tolerated(0.54) possibly_damaging(0.849) TCGA-MP-A4TE-01 7 131878846 131878846 C A PLXNA4 Missense_Mutation p.R944L 0.25 tolerated(0.45) benign(0.028) TCGA-MP-A4TE-01 7 136699568 136699568 T A CHRM2 Intron 0.27 TCGA-MP-A4TE-01 7 150733016 150733016 G C ABCB8 Silent p.R325R 0.31 TCGA-MP-A4TE-01 7 22999967 22999967 C T FAM126A Missense_Mutation p.C300Y 0.29 deleterious(0.02) possibly_damaging(0.879) TCGA-MP-A4TE-01 7 29132283 29132283 G A CPVL Silent p.H166H 0.26 TCGA-MP-A4TE-01 8 12040295 12040295 G T FAM86B1 3'UTR 0.14 TCGA-MP-A4TE-01 8 122641181 122641181 A T HAS2 Missense_Mutation p.F134I 0.11 deleterious(0) probably_damaging(0.945) TCGA-MP-A4TE-01 8 133980142 133980142 C T TG Silent p.D1930D 0.12 TCGA-MP-A4TE-01 8 143994079 143994079 C T CYP11B2 Missense_Mutation p.R422Q 0.29 tolerated(0.08) benign(0.401) TCGA-MP-A4TE-01 8 145151603 145151603 C T CYC1 Missense_Mutation p.A243V 0.27 deleterious(0) benign(0.261) TCGA-MP-A4TE-01 8 43152486 43152486 C A POTEA RNA 0.36 TCGA-MP-A4TE-01 8 43197450 43197450 C A POTEA RNA 0.15 TCGA-MP-A4TE-01 8 59059512 59059512 C T FAM110B Silent p.A241A 0.13 TCGA-MP-A4TE-01 8 77765957 77765957 C G ZFHX4 Missense_Mutation p.T2267S 0.26 possibly_damaging(0.598) TCGA-MP-A4TE-01 8 87439919 87439919 A G WWP1 Missense_Mutation p.H402R 0.31 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TE-01 9 104238104 104238104 G C TMEM246 3'UTR 0.39 TCGA-MP-A4TE-01 9 120475523 120475523 C A TLR4 Missense_Mutation p.P373T 0.35 tolerated(0.08) possibly_damaging(0.831) TCGA-MP-A4TE-01 9 140139180 140139180 C T FAM166A Missense_Mutation p.G221S 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-MP-A4TE-01 9 20414269 20414269 C G MLLT3 Missense_Mutation p.S192T 0.35 tolerated(0.19) possibly_damaging(0.899) TCGA-MP-A4TE-01 9 35105221 35105221 G C FAM214B Silent p.P538P 0.43 TCGA-MP-A4TE-01 9 95875330 95875330 G A C9orf89 Missense_Mutation p.D165N 0.38 tolerated(0.41) benign(0.041) TCGA-MP-A4TE-01 9 99286009 99286009 T A CDC14B Splice_Site p.X316_splice 0.24 TCGA-MP-A4TE-01 X 107923922 107923922 G T COL4A5 Missense_Mutation p.R1319L 0.54 benign(0) TCGA-MP-A4TE-01 X 133922824 133922824 G T FAM122B Missense_Mutation p.S124Y 0.36 deleterious(0) probably_damaging(0.993) TCGA-MP-A4TE-01 X 17750171 17750171 G T NHS Nonsense_Mutation p.E1494* 0.05 TCGA-MP-A4TE-01 X 17750172 17750172 A C NHS Missense_Mutation p.E1494A 0.05 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TE-01 X 22095703 22095703 G A PHEX Silent p.E182E 0.80 TCGA-MP-A4TE-01 X 30269467 30269467 T C MAGEB1 Missense_Mutation p.L286P 0.46 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TE-01 X 3235842 3235842 G T MXRA5 Silent p.V1960V 0.26 TCGA-MP-A4TE-01 X 36007510 36007510 G T CXorf22 Nonsense_Mutation p.E930* 0.71 TCGA-MP-A4TE-01 X 50089773 50089773 C A CCNB3 Silent p.P1259P 0.29 TCGA-MP-A4TF-01 10 104417001 104417001 C T TRIM8 Missense_Mutation p.L516F 0.23 tolerated_low_confidence(0.07) possibly_damaging(0.845) TCGA-MP-A4TF-01 10 108367055 108367055 C A SORCS1 Missense_Mutation p.A1012S 0.23 tolerated(0.06) benign(0.086) TCGA-MP-A4TF-01 10 121657964 121657964 G A SEC23IP Silent p.E63E 0.08 TCGA-MP-A4TF-01 10 135369108 135369108 G T SYCE1 Silent p.R275R 0.21 TCGA-MP-A4TF-01 10 26800733 26800733 C A APBB1IP Silent p.R197R 0.13 TCGA-MP-A4TF-01 10 28273196 28273196 G C ARMC4 Missense_Mutation p.T200R 0.36 tolerated(0.08) benign(0.046) TCGA-MP-A4TF-01 10 28527578 28527578 C A MPP7 5'UTR 0.10 TCGA-MP-A4TF-01 10 37414907 37414907 C T ANKRD30A Silent p.I8I 0.22 TCGA-MP-A4TF-01 10 43293976 43293976 G T BMS1 Missense_Mutation p.R717L 0.31 deleterious(0.01) benign(0.31) TCGA-MP-A4TF-01 10 85972037 85972037 C T CDHR1 Silent p.D552D 0.27 TCGA-MP-A4TF-01 10 85981750 85981750 C G LRIT2 Missense_Mutation p.V527L 0.31 tolerated(0.16) benign(0.033) TCGA-MP-A4TF-01 11 113816855 113816855 T A HTR3B Missense_Mutation p.V441E 0.08 deleterious_low_confidence(0) benign(0.002) TCGA-MP-A4TF-01 11 116661596 116661596 G T APOA5 Missense_Mutation p.L117M 0.18 deleterious(0.04) possibly_damaging(0.776) TCGA-MP-A4TF-01 11 121498360 121498360 G T SORL1 Missense_Mutation p.G2154V 0.16 deleterious(0) probably_damaging(0.95) TCGA-MP-A4TF-01 11 125280765 125280766 AC - PKNOX2 Frame_Shift_Del p.Q272Gfs*2 0.20 TCGA-MP-A4TF-01 11 1904654 1904654 G T LSP1 Missense_Mutation p.G249V 0.25 tolerated_low_confidence(0.27) benign(0.005) TCGA-MP-A4TF-01 11 19174127 19174127 G A ZDHHC13 Missense_Mutation p.A257T 0.07 deleterious(0) benign(0.304) TCGA-MP-A4TF-01 11 19251866 19251866 G T E2F8 Missense_Mutation p.S427Y 0.16 tolerated(0.48) benign(0.014) TCGA-MP-A4TF-01 11 20629117 20629117 T A SLC6A5 Missense_Mutation p.F302I 0.25 deleterious(0.03) possibly_damaging(0.457) TCGA-MP-A4TF-01 11 21592418 21592418 C G NELL1 Missense_Mutation p.Q697E 0.11 deleterious(0.03) possibly_damaging(0.793) TCGA-MP-A4TF-01 11 2444276 2444276 T C TRPM5 5'Flank 0.24 TCGA-MP-A4TF-01 11 35236458 35236458 G T CD44 Missense_Mutation p.D624Y 0.43 deleterious(0.01) benign(0.057) TCGA-MP-A4TF-01 11 4389490 4389490 T A OR52B4 Silent p.T12T 0.17 TCGA-MP-A4TF-01 11 47711628 47711628 C A AGBL2 Missense_Mutation p.R544I 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-MP-A4TF-01 11 4976025 4976025 T C OR51A2 Missense_Mutation p.K307E 0.37 deleterious(0.03) benign(0.167) TCGA-MP-A4TF-01 11 51515457 51515457 T A OR4C46 Missense_Mutation p.L59H 0.32 deleterious_low_confidence(0) benign(0.083) TCGA-MP-A4TF-01 11 5373488 5373488 G A OR51B6 Missense_Mutation p.V251I 0.08 tolerated(1) benign(0.047) TCGA-MP-A4TF-01 11 55761925 55761925 C A OR5F1 Missense_Mutation p.M59I 0.26 deleterious(0.01) benign(0.049) TCGA-MP-A4TF-01 11 56757047 56757047 A G OR5AK2 Missense_Mutation p.Y220C 0.05 tolerated(0.16) benign(0.049) TCGA-MP-A4TF-01 11 59211158 59211158 G T OR5A1 Nonsense_Mutation p.G173* 0.35 TCGA-MP-A4TF-01 11 59245438 59245438 G T OR4D10 Missense_Mutation p.C179F 0.15 deleterious(0) probably_damaging(1) TCGA-MP-A4TF-01 11 59577327 59577327 C T MRPL16 Splice_Site p.X41_splice 0.13 TCGA-MP-A4TF-01 11 6048098 6048098 G C OR56A1 Missense_Mutation p.I279M 0.29 deleterious(0) possibly_damaging(0.715) TCGA-MP-A4TF-01 11 68549407 68549407 C A CPT1A Missense_Mutation p.R395L 0.29 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TF-01 11 7982000 7982000 C A NLRP10 Missense_Mutation p.A387S 0.09 tolerated(0.39) benign(0.214) TCGA-MP-A4TF-01 11 8111755 8111755 G T TUB Missense_Mutation p.S132I 0.08 tolerated(0.17) possibly_damaging(0.884) TCGA-MP-A4TF-01 11 82905737 82905737 C T ANKRD42 Missense_Mutation p.P9S 0.07 tolerated_low_confidence(0.11) benign(0.047) TCGA-MP-A4TF-01 11 85459342 85459342 T C SYTL2 Missense_Mutation p.M76V 0.13 deleterious(0) probably_damaging(0.968) TCGA-MP-A4TF-01 11 88338109 88338109 G T GRM5 Missense_Mutation p.H391N 0.27 deleterious(0) benign(0.362) TCGA-MP-A4TF-01 11 8970008 8970008 A G TMEM9B Silent p.F152F 0.06 TCGA-MP-A4TF-01 11 94126761 94126761 G T GPR83 Silent p.P179P 0.15 TCGA-MP-A4TF-01 12 103795382 103795382 C A C12orf42 Intron 0.60 TCGA-MP-A4TF-01 12 104089416 104089416 G A STAB2 Missense_Mutation p.G1155D 0.68 tolerated(0.19) probably_damaging(0.972) TCGA-MP-A4TF-01 12 111342585 111342585 G T CCDC63 Missense_Mutation p.R512S 0.58 tolerated(0.43) benign(0.117) TCGA-MP-A4TF-01 12 113285519 113285519 C A RPH3A Silent p.S34S 0.55 TCGA-MP-A4TF-01 12 119563201 119563201 C A SRRM4 Silent p.P177P 0.49 TCGA-MP-A4TF-01 12 123087193 123087193 G T KNTC1 Missense_Mutation p.L1577F 0.49 deleterious(0.03) probably_damaging(0.991) TCGA-MP-A4TF-01 12 124397642 124397642 T C DNAH10 Intron 0.41 TCGA-MP-A4TF-01 12 13716151 13716151 C A GRIN2B Nonsense_Mutation p.E1341* 0.22 TCGA-MP-A4TF-01 12 18234122 18234122 C T RERGL 3'UTR 0.35 TCGA-MP-A4TF-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.95 deleterious(0.04) probably_damaging(0.993) TCGA-MP-A4TF-01 12 26714828 26714828 A C ITPR2 Missense_Mutation p.F1563C 0.05 deleterious(0.01) possibly_damaging(0.664) TCGA-MP-A4TF-01 12 32793576 32793576 A T FGD4 3'UTR 0.82 TCGA-MP-A4TF-01 12 33560178 33560178 C T SYT10 Missense_Mutation p.R208K 0.07 deleterious(0.04) probably_damaging(0.986) TCGA-MP-A4TF-01 12 3757647 3757647 T G EFCAB4B Intron 0.08 TCGA-MP-A4TF-01 12 46582627 46582627 C T SLC38A1 3'UTR 0.67 TCGA-MP-A4TF-01 12 4737738 4737738 G C AKAP3 Silent p.G110G 0.27 TCGA-MP-A4TF-01 12 49425532 49425532 C A KMT2D Missense_Mutation p.R4319I 0.55 unknown(0) TCGA-MP-A4TF-01 12 50029010 50029010 A G PRPF40B Missense_Mutation p.E377G 0.41 tolerated(0.05) probably_damaging(0.998) TCGA-MP-A4TF-01 12 50186493 50186493 G A NCKAP5L Missense_Mutation p.P1206L 0.55 tolerated(0.37) possibly_damaging(0.49) TCGA-MP-A4TF-01 12 50834246 50834246 G T LARP4 Nonsense_Mutation p.E222* 0.51 TCGA-MP-A4TF-01 12 52984643 52984643 C A KRT72 Nonsense_Mutation p.E356* 0.55 TCGA-MP-A4TF-01 12 72094703 72094703 G T TMEM19 Silent p.V313V 0.53 TCGA-MP-A4TF-01 12 7526095 7526095 A T CD163L1 Missense_Mutation p.L1184Q 0.15 deleterious(0) probably_damaging(1) TCGA-MP-A4TF-01 12 7637774 7637774 A T CD163 Silent p.P899P 0.23 TCGA-MP-A4TF-01 12 7899986 7899986 T C CLEC4C 5'UTR 0.08 TCGA-MP-A4TF-01 12 80735801 80735801 A T OTOGL Silent p.I1699I 0.55 TCGA-MP-A4TF-01 12 91539978 91539978 A C DCN Missense_Mutation p.C313G 0.53 deleterious(0) probably_damaging(0.937) TCGA-MP-A4TF-01 12 94243813 94243813 G T CRADD Missense_Mutation p.Q122H 0.53 tolerated(0.06) benign(0.281) TCGA-MP-A4TF-01 13 101997632 101997632 C A NALCN Missense_Mutation p.G262C 0.18 deleterious(0) probably_damaging(1) TCGA-MP-A4TF-01 13 103271180 103271180 G A TPP2 Missense_Mutation p.D202N 0.28 deleterious(0.01) probably_damaging(0.99) TCGA-MP-A4TF-01 13 103718243 103718243 G T SLC10A2 Silent p.V119V 0.22 TCGA-MP-A4TF-01 13 110857883 110857883 G T COL4A1 Silent p.G287G 0.23 TCGA-MP-A4TF-01 13 46287439 46287439 C A SPERT Missense_Mutation p.N93K 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.767) TCGA-MP-A4TF-01 13 46287440 46287440 C A SPERT Missense_Mutation p.R94S 0.26 tolerated_low_confidence(0.06) benign(0.361) TCGA-MP-A4TF-01 13 51957591 51957591 C A INTS6 Missense_Mutation p.V352L 0.18 tolerated(0.07) benign(0.207) TCGA-MP-A4TF-01 13 52660466 52660466 G T NEK5 Missense_Mutation p.Q476K 0.24 deleterious(0.01) benign(0.176) TCGA-MP-A4TF-01 13 70314547 70314547 C T KLHL1 Missense_Mutation p.G594D 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-MP-A4TF-01 13 79933805 79933805 T C RBM26 Silent p.K478K 0.11 TCGA-MP-A4TF-01 13 84453469 84453469 C A SLITRK1 3'UTR 0.22 TCGA-MP-A4TF-01 13 84453492 84453492 G T SLITRK1 3'UTR 0.20 TCGA-MP-A4TF-01 14 106452975 106452975 C T IGHV1-2 Missense_Mutation p.G16E 0.43 deleterious(0) probably_damaging(0.93) TCGA-MP-A4TF-01 14 20666461 20666461 C A OR11G2 Missense_Mutation p.L323I 0.11 tolerated(0.34) benign(0.011) TCGA-MP-A4TF-01 14 21025061 21025061 G T RNASE9 Silent p.P61P 0.26 TCGA-MP-A4TF-01 14 21052167 21052167 G T RNASE11 Missense_Mutation p.T156K 0.29 deleterious(0) possibly_damaging(0.891) TCGA-MP-A4TF-01 14 21109607 21109607 T G OR6S1 Missense_Mutation p.K82Q 0.34 deleterious(0) probably_damaging(0.996) TCGA-MP-A4TF-01 14 21558875 21558875 C A ZNF219 Missense_Mutation p.L663F 0.39 deleterious(0.02) probably_damaging(0.996) TCGA-MP-A4TF-01 14 21623620 21623620 G C OR5AU1 Missense_Mutation p.P189A 0.08 tolerated(0.2) benign(0.057) TCGA-MP-A4TF-01 14 23511731 23511731 C A PSMB11 Silent p.A99A 0.30 TCGA-MP-A4TF-01 14 25101280 25101280 C T GZMB Silent p.R128R 0.25 TCGA-MP-A4TF-01 14 32562393 32562393 A G ARHGAP5 Missense_Mutation p.I840V 0.28 tolerated(0.24) benign(0.254) TCGA-MP-A4TF-01 14 38724284 38724284 G - CLEC14A Frame_Shift_Del p.P315Rfs*26 0.13 TCGA-MP-A4TF-01 14 51224581 51224581 C T NIN Missense_Mutation p.G1056E 0.16 deleterious(0.02) probably_damaging(1) TCGA-MP-A4TF-01 14 53345401 53345401 C A FERMT2 Missense_Mutation p.A288S 0.30 tolerated(0.18) probably_damaging(0.996) TCGA-MP-A4TF-01 14 57755738 57755738 G C AP5M1 3'UTR 0.36 TCGA-MP-A4TF-01 14 61442312 61442312 G A TRMT5 Missense_Mutation p.S442F 0.21 deleterious(0.01) benign(0.096) TCGA-MP-A4TF-01 14 63175170 63175170 T A KCNH5 Missense_Mutation p.I675F 0.16 deleterious(0) benign(0.134) TCGA-MP-A4TF-01 14 88477802 88477802 G T GPR65 Missense_Mutation p.R204L 0.44 tolerated(0.15) benign(0.003) TCGA-MP-A4TF-01 14 94776111 94776111 C G SERPINA6 Silent p.R282R 0.42 TCGA-MP-A4TF-01 15 23889611 23889611 C A MAGEL2 Silent p.L490L 0.32 TCGA-MP-A4TF-01 15 25473956 25473956 G T SNORD115-33 5'Flank 0.19 TCGA-MP-A4TF-01 15 26812732 26812732 G T GABRB3 Silent p.A277A 0.30 TCGA-MP-A4TF-01 15 27222179 27222179 A T GABRG3 Missense_Mutation p.E28D 0.14 tolerated(0.32) benign(0.002) TCGA-MP-A4TF-01 15 28356949 28356949 A T HERC2 Missense_Mutation p.F4822Y 0.16 probably_damaging(0.957) TCGA-MP-A4TF-01 15 28387465 28387465 C T HERC2 Nonsense_Mutation p.W3873* 0.24 TCGA-MP-A4TF-01 15 32460312 32460312 G T CHRNA7 Missense_Mutation p.G417C 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-MP-A4TF-01 15 34129142 34129142 G T RYR3 Missense_Mutation p.L3868F 0.25 possibly_damaging(0.641) TCGA-MP-A4TF-01 15 41798201 41798201 G A LTK Missense_Mutation p.A515V 0.13 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-MP-A4TF-01 15 42147884 42147884 C A SPTBN5 Missense_Mutation p.M3027I 0.47 benign(0.073) TCGA-MP-A4TF-01 15 42185162 42185162 G A SPTBN5 Missense_Mutation p.P105L 0.10 probably_damaging(1) TCGA-MP-A4TF-01 15 42742657 42742657 G A ZNF106 Nonsense_Mutation p.Q582* 0.13 TCGA-MP-A4TF-01 15 45003745 45003745 A G B2M Translation_Start_Site p.M1? 0.12 deleterious(0) possibly_damaging(0.678) TCGA-MP-A4TF-01 15 64017568 64017568 G A HERC1 Missense_Mutation p.P1164L 0.36 benign(0) TCGA-MP-A4TF-01 15 70976721 70976721 C T UACA Missense_Mutation p.G223S 0.15 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TF-01 15 72023484 72023484 G T THSD4 Missense_Mutation p.G520C 0.25 deleterious(0) probably_damaging(1) TCGA-MP-A4TF-01 15 75500340 75500340 T A C15orf39 Missense_Mutation p.F651I 0.12 deleterious(0) benign(0) TCGA-MP-A4TF-01 15 81440246 81440246 G C C15orf26 Silent p.L228L 0.16 TCGA-MP-A4TF-01 15 81440757 81440757 C A C15orf26 Missense_Mutation p.H263Q 0.27 deleterious(0.02) benign(0.167) TCGA-MP-A4TF-01 15 81440758 81440758 T G C15orf26 Missense_Mutation p.W264G 0.26 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TF-01 15 81571979 81571979 C A IL16 Silent p.P315P 0.14 TCGA-MP-A4TF-01 15 83328339 83328339 C A AP3B2 Missense_Mutation p.K1074N 0.14 tolerated(0.54) benign(0.403) TCGA-MP-A4TF-01 15 83328342 83328342 T A AP3B2 Silent p.V1073V 0.14 TCGA-MP-A4TF-01 15 83781563 83781563 T A TM6SF1 Missense_Mutation p.V36E 0.15 deleterious(0.01) benign(0.347) TCGA-MP-A4TF-01 15 88423613 88423613 C A NTRK3 Missense_Mutation p.S741I 0.24 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TF-01 15 88678445 88678445 A G NTRK3 Missense_Mutation p.L364P 0.07 tolerated(0.2) possibly_damaging(0.611) TCGA-MP-A4TF-01 15 89073873 89073873 C T DET1 Missense_Mutation p.R366Q 0.11 tolerated(0.08) benign(0.169) TCGA-MP-A4TF-01 15 99434579 99434579 G T IGF1R Silent p.R222R 0.19 TCGA-MP-A4TF-01 16 15703571 15703571 C A KIAA0430 Missense_Mutation p.D1255Y 0.23 deleterious(0) probably_damaging(0.967) TCGA-MP-A4TF-01 16 15758648 15758648 G T NDE1 Nonsense_Mutation p.G5* 0.09 TCGA-MP-A4TF-01 16 1866946 1866946 C A HAGH Missense_Mutation p.R232L 0.22 tolerated(1) benign(0.003) TCGA-MP-A4TF-01 16 20043561 20043561 G A GPR139 Silent p.I186I 0.09 TCGA-MP-A4TF-01 16 20702397 20702397 T C ACSM1 Silent p.P38P 0.26 TCGA-MP-A4TF-01 16 21658471 21658471 G T IGSF6 Missense_Mutation p.T137N 0.12 deleterious(0) probably_damaging(1) TCGA-MP-A4TF-01 16 22149824 22149824 G T VWA3A Silent p.G761G 0.08 TCGA-MP-A4TF-01 16 23706575 23706575 C A ERN2 Silent p.R630R 0.16 TCGA-MP-A4TF-01 16 28995594 28995594 G T SPNS1 Missense_Mutation p.V521L 0.16 tolerated(0.11) possibly_damaging(0.595) TCGA-MP-A4TF-01 16 4410327 4410327 A G CORO7 Missense_Mutation p.I687T 0.10 deleterious(0.02) benign(0.14) TCGA-MP-A4TF-01 16 46761280 46761280 C G MYLK3 Silent p.G594G 0.32 TCGA-MP-A4TF-01 16 48234320 48234320 G T ABCC11 Missense_Mutation p.S650Y 0.50 deleterious(0) probably_damaging(0.994) TCGA-MP-A4TF-01 16 57953043 57953043 C A CNGB1 Missense_Mutation p.W639C 0.14 deleterious(0.01) benign(0.106) TCGA-MP-A4TF-01 16 58712337 58712337 G T SLC38A7 Missense_Mutation p.P171T 0.59 tolerated(0.17) benign(0.112) TCGA-MP-A4TF-01 16 67709596 67709596 T C GFOD2 Missense_Mutation p.Q207R 0.42 deleterious(0.03) probably_damaging(0.999) TCGA-MP-A4TF-01 16 68014130 68014130 G T DPEP3 Missense_Mutation p.P77T 0.24 deleterious_low_confidence(0.02) benign(0.033) TCGA-MP-A4TF-01 16 71186637 71186637 T C HYDIN Missense_Mutation p.M256V 0.30 benign(0.053) TCGA-MP-A4TF-01 16 72110594 72110594 G A HPR Missense_Mutation p.G221S 0.09 deleterious(0) probably_damaging(1) TCGA-MP-A4TF-01 16 72166651 72166651 C A PMFBP1 Silent p.L481L 0.11 TCGA-MP-A4TF-01 16 76513354 76513354 G T CNTNAP4 Nonsense_Mutation p.G528* 0.23 TCGA-MP-A4TF-01 16 772735 772735 C T CCDC78 3'UTR 0.11 TCGA-MP-A4TF-01 16 82182336 82182336 T A MPHOSPH6 Nonstop_Mutation p.*161Yext*28 0.36 TCGA-MP-A4TF-01 16 88052125 88052125 C T BANP Silent p.I241I 0.29 TCGA-MP-A4TF-01 16 90126815 90126815 C A PRDM7 Missense_Mutation p.M389I 0.11 tolerated_low_confidence(0.23) benign(0.001) TCGA-MP-A4TF-01 17 10323377 10323377 G T MYH8 Missense_Mutation p.S56R 0.33 deleterious(0) possibly_damaging(0.863) TCGA-MP-A4TF-01 17 10351224 10351224 G C MYH4 Missense_Mutation p.L1626V 0.14 tolerated(0.07) benign(0.168) TCGA-MP-A4TF-01 17 11784668 11784668 C A DNAH9 Missense_Mutation p.L3582M 0.37 probably_damaging(0.969) TCGA-MP-A4TF-01 17 1782684 1782684 C G RPA1 Missense_Mutation p.S312W 0.32 deleterious(0.01) possibly_damaging(0.492) TCGA-MP-A4TF-01 17 21208419 21208419 C G MAP2K3 Silent p.V251V 0.08 TCGA-MP-A4TF-01 17 21731236 21731236 G T UBBP4 Intron 0.17 TCGA-MP-A4TF-01 17 30611762 30611762 A G RHBDL3 Missense_Mutation p.K74E 0.17 deleterious(0) probably_damaging(0.987) TCGA-MP-A4TF-01 17 32688847 32688847 A G CCL1 Missense_Mutation p.C49R 0.09 deleterious(0) possibly_damaging(0.796) TCGA-MP-A4TF-01 17 33503017 33503017 G A UNC45B Silent p.K665K 0.33 TCGA-MP-A4TF-01 17 35914083 35914083 G A SYNRG Missense_Mutation p.P581L 0.29 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TF-01 17 39254152 39254152 G T KRTAP4-8 Missense_Mutation p.P62H 0.18 deleterious(0.01) unknown(0) TCGA-MP-A4TF-01 17 40318544 40318544 G C KCNH4 Missense_Mutation p.D537E 0.09 tolerated(0.32) benign(0.001) TCGA-MP-A4TF-01 17 40556906 40556906 G A PTRF Silent p.H324H 0.15 TCGA-MP-A4TF-01 17 41243619 41243619 G A BRCA1 Missense_Mutation p.T1310I 0.17 deleterious(0.01) possibly_damaging(0.878) TCGA-MP-A4TF-01 17 44039772 44039772 G T MAPT Missense_Mutation p.R23S 0.33 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-MP-A4TF-01 17 4607409 4607409 T C PELP1 5'UTR 0.32 TCGA-MP-A4TF-01 17 46103774 46103774 G A COPZ2 3'UTR 0.21 TCGA-MP-A4TF-01 17 46669567 46669567 G A HOXB5 3'UTR 0.27 TCGA-MP-A4TF-01 17 48699021 48699021 A T CACNA1G Missense_Mutation p.I1976F 0.10 deleterious(0) possibly_damaging(0.783) TCGA-MP-A4TF-01 17 58506881 58506881 G T C17orf64 Silent p.L196L 0.14 TCGA-MP-A4TF-01 17 62019061 62019061 G T SCN4A Silent p.I1527I 0.27 TCGA-MP-A4TF-01 17 72297197 72297197 G A DNAI2 Missense_Mutation p.D293N 0.08 deleterious(0) probably_damaging(0.994) TCGA-MP-A4TF-01 17 7577535 7577535 C A TP53 Missense_Mutation p.R249M 0.32 deleterious(0) probably_damaging(0.993) TCGA-MP-A4TF-01 17 79204519 79204519 C A ENTHD2 Intron 0.44 TCGA-MP-A4TF-01 17 79426086 79426086 C T RP11-1055B8.7 Missense_Mutation p.S1871L 0.27 probably_damaging(0.993) TCGA-MP-A4TF-01 18 31319061 31319061 G T ASXL3 Missense_Mutation p.V565L 0.50 benign(0) TCGA-MP-A4TF-01 18 35145573 35145573 C A CELF4 Missense_Mutation p.G11V 0.35 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-MP-A4TF-01 18 40323563 40323563 C G RIT2 Missense_Mutation p.K183N 0.42 tolerated(0.07) benign(0.17) TCGA-MP-A4TF-01 18 42532789 42532789 C A SETBP1 Silent p.R1162R 0.40 TCGA-MP-A4TF-01 18 42533124 42533124 G A SETBP1 Silent p.T1273T 0.25 TCGA-MP-A4TF-01 18 43329997 43329997 G A SLC14A1 3'UTR 0.22 TCGA-MP-A4TF-01 18 56246538 56246538 T A ALPK2 Silent p.S490S 0.41 TCGA-MP-A4TF-01 18 67872503 67872503 C A RTTN Missense_Mutation p.C27F 0.38 tolerated(0.54) benign(0.006) TCGA-MP-A4TF-01 18 6961949 6961949 G C LAMA1 Missense_Mutation p.L2483V 0.22 tolerated(0.18) probably_damaging(0.999) TCGA-MP-A4TF-01 19 12995807 12995807 G T KLF1 Silent p.T327T 0.29 TCGA-MP-A4TF-01 19 15726454 15726454 G A AD000091.2 5'Flank 0.37 TCGA-MP-A4TF-01 19 2877370 2877370 G C ZNF556 Missense_Mutation p.K138N 0.17 tolerated(0.17) benign(0.317) TCGA-MP-A4TF-01 19 30934626 30934626 C G ZNF536 Missense_Mutation p.R53G 0.25 deleterious_low_confidence(0) possibly_damaging(0.599) TCGA-MP-A4TF-01 19 30934627 30934627 G C ZNF536 Missense_Mutation p.R53P 0.25 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-MP-A4TF-01 19 35843026 35843026 T G FFAR1 Missense_Mutation p.F191C 0.15 deleterious(0) probably_damaging(0.988) TCGA-MP-A4TF-01 19 36273568 36273568 C T ARHGAP33 Missense_Mutation p.P434S 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.682) TCGA-MP-A4TF-01 19 37367868 37367868 C A ZNF345 Missense_Mutation p.P46T 0.05 deleterious(0.03) benign(0.024) TCGA-MP-A4TF-01 19 38189530 38189530 C A ZNF607 Missense_Mutation p.G501V 0.26 deleterious(0) probably_damaging(0.982) TCGA-MP-A4TF-01 19 38980796 38980796 T C RYR1 Silent p.Y1965Y 0.11 TCGA-MP-A4TF-01 19 39804889 39804889 C A LRFN1 Missense_Mutation p.R363M 0.25 deleterious(0) possibly_damaging(0.871) TCGA-MP-A4TF-01 19 40433984 40433986 CTT AA FCGBP Frame_Shift_Del p.K95Lfs*4 0.34 TCGA-MP-A4TF-01 19 43097973 43097973 C A CEACAM8 Silent p.G48G 0.20 TCGA-MP-A4TF-01 19 43683102 43683102 C A PSG5 Intron 0.39 TCGA-MP-A4TF-01 19 43708209 43708209 G C PSG4 Missense_Mutation p.Q87E 0.47 tolerated(0.61) benign(0.01) TCGA-MP-A4TF-01 19 48832627 48832627 A T EMP3 Missense_Mutation p.Q67L 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-MP-A4TF-01 19 49621787 49621787 T C C19orf73 3'UTR 0.18 TCGA-MP-A4TF-01 19 53740937 53740937 T G ZNF677 Missense_Mutation p.K348T 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-MP-A4TF-01 19 54483184 54483184 T C CACNG8 Missense_Mutation p.V144A 0.13 deleterious(0.05) benign(0.03) TCGA-MP-A4TF-01 19 54618077 54618077 G A TFPT Silent p.T9T 0.22 TCGA-MP-A4TF-01 19 55098720 55098720 G T LILRA2 Missense_Mutation p.M453I 0.26 deleterious(0.04) benign(0.003) TCGA-MP-A4TF-01 19 55098832 55098832 C G LILRA2 3'UTR 0.19 TCGA-MP-A4TF-01 19 55377875 55377875 C A KIR3DL2 Missense_Mutation p.Q386K 0.18 deleterious(0) benign(0.071) TCGA-MP-A4TF-01 19 55447766 55447766 C T NLRP7 Silent p.R721R 0.14 TCGA-MP-A4TF-01 19 55815089 55815089 G T BRSK1 Missense_Mutation p.R394L 0.33 deleterious(0) benign(0.25) TCGA-MP-A4TF-01 19 55994196 55994196 G T ZNF628 Missense_Mutation p.A546S 0.12 tolerated(0.14) probably_damaging(0.971) TCGA-MP-A4TF-01 19 5844168 5844168 G C FUT3 Missense_Mutation p.P228R 0.34 deleterious(0.03) possibly_damaging(0.747) TCGA-MP-A4TF-01 19 5918527 5918527 C T RANBP3 Missense_Mutation p.V485M 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-MP-A4TF-01 19 9069328 9069329 GT - MUC16 Frame_Shift_Del p.P6040Sfs*22 0.31 TCGA-MP-A4TF-01 19 9075908 9075908 T C MUC16 Silent p.P3846P 0.43 TCGA-MP-A4TF-01 1 100587068 100587068 C A SASS6 Missense_Mutation p.D117Y 0.13 deleterious(0) benign(0.119) TCGA-MP-A4TF-01 1 101705330 101705330 G A S1PR1 Missense_Mutation p.V264I 0.32 deleterious(0.02) benign(0.18) TCGA-MP-A4TF-01 1 102270134 102270134 G T OLFM3 Missense_Mutation p.A346E 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-MP-A4TF-01 1 109554145 109554145 A C WDR47 Missense_Mutation p.F182V 0.20 deleterious(0) possibly_damaging(0.722) TCGA-MP-A4TF-01 1 115828679 115828679 C G NGF 3'UTR 0.25 TCGA-MP-A4TF-01 1 12632845 12632845 C A DHRS3 Silent p.T245T 0.29 TCGA-MP-A4TF-01 1 150526107 150526107 C A ADAMTSL4 Missense_Mutation p.L214I 0.06 tolerated(0.27) benign(0.039) TCGA-MP-A4TF-01 1 150921726 150921726 C T SETDB1 Missense_Mutation p.P466S 0.30 tolerated(0.32) benign(0.001) TCGA-MP-A4TF-01 1 152277512 152277512 C G FLG Missense_Mutation p.G3284R 0.10 unknown(0) TCGA-MP-A4TF-01 1 153279741 153279741 T A PGLYRP3 Missense_Mutation p.T20S 0.45 tolerated(0.33) benign(0.002) TCGA-MP-A4TF-01 1 156811947 156811947 G T INSRR Silent p.A1118A 0.14 TCGA-MP-A4TF-01 1 156821693 156821693 G T INSRR Missense_Mutation p.R310S 0.10 tolerated(0.19) possibly_damaging(0.696) TCGA-MP-A4TF-01 1 158299843 158299843 G C CD1B Missense_Mutation p.L136V 0.46 tolerated(0.05) benign(0.002) TCGA-MP-A4TF-01 1 159161786 159161786 G A CADM3 Missense_Mutation p.C84Y 0.51 deleterious(0) probably_damaging(1) TCGA-MP-A4TF-01 1 159161787 159161787 C T CADM3 Silent p.C84C 0.51 TCGA-MP-A4TF-01 1 159161788 159161788 C T CADM3 Nonsense_Mutation p.Q85* 0.52 TCGA-MP-A4TF-01 1 159832288 159832288 G A VSIG8 Silent p.H8H 0.09 TCGA-MP-A4TF-01 1 160784510 160784510 C T LY9 Missense_Mutation p.S344F 0.07 tolerated(0.08) probably_damaging(0.987) TCGA-MP-A4TF-01 1 161641339 161641339 C T FCGR2B Silent p.P97P 0.51 TCGA-MP-A4TF-01 1 163172637 163172637 G T RGS5 5'UTR 0.43 TCGA-MP-A4TF-01 1 164761970 164761970 G T PBX1 Nonsense_Mutation p.E169* 0.15 TCGA-MP-A4TF-01 1 1688274 1688274 A T NADK Intron 0.17 TCGA-MP-A4TF-01 1 175048647 175048647 C A TNN Missense_Mutation p.D196E 0.16 deleterious(0.01) benign(0.41) TCGA-MP-A4TF-01 1 175048695 175048695 C A TNN Nonsense_Mutation p.C212* 0.29 TCGA-MP-A4TF-01 1 175067570 175067570 G A TNN Missense_Mutation p.R653H 0.53 tolerated(0.07) benign(0.082) TCGA-MP-A4TF-01 1 176564554 176564554 C A PAPPA2 Missense_Mutation p.T605K 0.14 deleterious(0) probably_damaging(0.984) TCGA-MP-A4TF-01 1 200842207 200842207 G T GPR25 Silent p.A14A 0.36 TCGA-MP-A4TF-01 1 203148507 203148507 C A CHI3L1 3'UTR 0.50 TCGA-MP-A4TF-01 1 203148508 203148508 C G CHI3L1 3'UTR 0.50 TCGA-MP-A4TF-01 1 216061791 216061791 C T USH2A Missense_Mutation p.V2734M 0.13 probably_damaging(0.996) TCGA-MP-A4TF-01 1 228475826 228475826 G T OBSCN Silent p.T3721T 0.48 TCGA-MP-A4TF-01 1 228612922 228612922 G A HIST3H3 Silent p.G35G 0.06 TCGA-MP-A4TF-01 1 236645742 236645742 G A EDARADD Silent p.G147G 0.40 TCGA-MP-A4TF-01 1 240371125 240371125 G T FMN2 Nonsense_Mutation p.G1005* 0.35 TCGA-MP-A4TF-01 1 241797223 241797223 T A CHML Missense_Mutation p.I616F 0.35 deleterious(0) possibly_damaging(0.882) TCGA-MP-A4TF-01 1 24666221 24666221 C T GRHL3 Missense_Mutation p.S339F 0.29 deleterious(0) probably_damaging(1) TCGA-MP-A4TF-01 1 247614733 247614733 C G OR2B11 Missense_Mutation p.E184D 0.55 deleterious(0.01) probably_damaging(0.992) TCGA-MP-A4TF-01 1 248367048 248367048 C T OR2M3 Missense_Mutation p.H227Y 0.39 tolerated(0.09) benign(0.014) TCGA-MP-A4TF-01 1 25944266 25944267 - T MAN1C1 5'UTR 0.44 TCGA-MP-A4TF-01 1 40028026 40028026 T A PABPC4 Silent p.A577A 0.36 TCGA-MP-A4TF-01 1 46659586 46659586 G T POMGNT1 Missense_Mutation p.N297K 0.10 probably_damaging(0.914) TCGA-MP-A4TF-01 1 63100466 63100466 T A DOCK7 Missense_Mutation p.Q338L 0.20 deleterious(0.01) benign(0.003) TCGA-MP-A4TF-01 1 6653604 6653604 C A KLHL21 Missense_Mutation p.A539S 0.18 tolerated(0.8) benign(0.007) TCGA-MP-A4TF-01 1 70502175 70502175 G C LRRC7 Missense_Mutation p.S681T 0.32 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-MP-A4TF-01 1 86921203 86921203 T A CLCA2 Nonsense_Mutation p.L942* 0.33 TCGA-MP-A4TF-01 1 90049149 90049149 G T LRRC8B Missense_Mutation p.V314F 0.28 deleterious(0.04) probably_damaging(0.991) TCGA-MP-A4TF-01 1 978992 978992 G A AGRN Missense_Mutation p.V560M 0.25 deleterious(0.01) possibly_damaging(0.867) TCGA-MP-A4TF-01 1 99771691 99771691 C A LPPR4 Missense_Mutation p.P473T 0.16 deleterious(0.01) possibly_damaging(0.754) TCGA-MP-A4TF-01 1 99772577 99772577 T A LPPR4 3'UTR 0.20 TCGA-MP-A4TF-01 20 13074220 13074220 C T SPTLC3 Silent p.H274H 0.30 TCGA-MP-A4TF-01 20 19998040 19998040 G T NAA20 5'UTR 0.15 TCGA-MP-A4TF-01 20 23065554 23065554 G T CD93 Missense_Mutation p.Q426K 0.34 tolerated(1) benign(0.002) TCGA-MP-A4TF-01 20 25596776 25596776 C A NANP Nonsense_Mutation p.G178* 0.30 TCGA-MP-A4TF-01 20 35882716 35882716 G A GHRH Nonsense_Mutation p.R69* 0.36 TCGA-MP-A4TF-01 20 50418997 50418997 C A SALL4 5'UTR 0.25 TCGA-MP-A4TF-01 20 57035972 57035972 G C APCDD1L Silent p.P460P 0.31 TCGA-MP-A4TF-01 20 57428498 57428498 C A GNAS Missense_Mutation p.P60T 0.36 deleterious_low_confidence(0) unknown(0) TCGA-MP-A4TF-01 20 57428499 57428499 C A GNAS Missense_Mutation p.P60H 0.29 deleterious_low_confidence(0.03) unknown(0) TCGA-MP-A4TF-01 20 6022885 6022885 C G LRRN4 Missense_Mutation p.D336H 0.30 deleterious(0) probably_damaging(0.985) TCGA-MP-A4TF-01 20 61143405 61143405 T A C20orf166 5'Flank 0.39 TCGA-MP-A4TF-01 20 8862318 8862318 C A PLCB1 Missense_Mutation p.P1158H 0.27 deleterious(0.03) probably_damaging(0.986) TCGA-MP-A4TF-01 20 9561229 9561229 C - PAK7 Frame_Shift_Del p.V185* 0.27 TCGA-MP-A4TF-01 21 11039328 11039328 C G BAGE2 RNA 0.03 TCGA-MP-A4TF-01 21 28296468 28296468 C T ADAMTS5 Silent p.T899T 0.36 TCGA-MP-A4TF-01 21 30316856 30316856 G T LTN1 Missense_Mutation p.S1323R 0.11 deleterious(0.04) benign(0.096) TCGA-MP-A4TF-01 21 43412890 43412890 C A ZBTB21 Missense_Mutation p.D439Y 0.36 deleterious(0) probably_damaging(0.98) TCGA-MP-A4TF-01 21 47967060 47967060 C T DIP2A Intron 0.58 TCGA-MP-A4TF-01 22 16256622 16256622 T G POTEH 3'UTR 0.10 TCGA-MP-A4TF-01 22 17618888 17618888 C G CECR5 3'UTR 0.36 TCGA-MP-A4TF-01 22 20020699 20020699 G T TANGO2 Intron 0.22 TCGA-MP-A4TF-01 22 21330059 21330059 G T AIFM3 Nonsense_Mutation p.E267* 0.26 TCGA-MP-A4TF-01 22 21350158 21350158 C G LZTR1 Missense_Mutation p.S689C 0.11 tolerated(1) benign(0.013) TCGA-MP-A4TF-01 22 24452786 24452786 G T CABIN1 Missense_Mutation p.D409Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TF-01 22 24629893 24629893 T A GGT5 Missense_Mutation p.S85C 0.13 deleterious(0.01) probably_damaging(1) TCGA-MP-A4TF-01 22 26854458 26854458 C T HPS4 Missense_Mutation p.S600N 0.24 tolerated(0.13) possibly_damaging(0.535) TCGA-MP-A4TF-01 22 30412545 30412545 G C MTMR3 Missense_Mutation p.C511S 0.29 deleterious(0.04) probably_damaging(0.998) TCGA-MP-A4TF-01 22 32179896 32179896 G T DEPDC5 Missense_Mutation p.V163L 0.11 deleterious(0) possibly_damaging(0.717) TCGA-MP-A4TF-01 22 32934075 32934075 G A SYN3 Silent p.N313N 0.20 TCGA-MP-A4TF-01 22 46655131 46655131 A G PKDREJ Silent p.S1363S 0.12 TCGA-MP-A4TF-01 22 50877098 50877098 G A PPP6R2 Missense_Mutation p.A653T 0.06 tolerated(0.5) benign(0.005) TCGA-MP-A4TF-01 2 103324646 103324646 C A SLC9A2 Missense_Mutation p.R713S 0.22 tolerated(0.34) benign(0.061) TCGA-MP-A4TF-01 2 108475844 108475844 C A RGPD4 Missense_Mutation p.L490I 0.14 deleterious(0.04) possibly_damaging(0.636) TCGA-MP-A4TF-01 2 108488618 108488618 G T RGPD4 Missense_Mutation p.Q1386H 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-MP-A4TF-01 2 11284256 11284256 T A C2orf50 3'UTR 0.11 TCGA-MP-A4TF-01 2 119915833 119915833 G T C1QL2 Missense_Mutation p.L5M 0.16 deleterious_low_confidence(0) unknown(0) TCGA-MP-A4TF-01 2 120703968 120703968 G T PTPN4 Missense_Mutation p.D523Y 0.11 deleterious(0) probably_damaging(1) TCGA-MP-A4TF-01 2 127958834 127958834 G A CYP27C1 Silent p.Y84Y 0.15 TCGA-MP-A4TF-01 2 128367441 128367441 G T MYO7B Missense_Mutation p.W1014C 0.48 deleterious(0.01) probably_damaging(0.996) TCGA-MP-A4TF-01 2 128367490 128367490 G T MYO7B Missense_Mutation p.A1031S 0.52 tolerated(0.63) benign(0.022) TCGA-MP-A4TF-01 2 130897181 130897181 G A CCDC74B Nonsense_Mutation p.Q364* 0.36 TCGA-MP-A4TF-01 2 133543028 133543028 G T NCKAP5 Nonsense_Mutation p.C452* 0.15 TCGA-MP-A4TF-01 2 136566235 136566235 C A LCT Missense_Mutation p.D1228Y 0.08 tolerated(1) benign(0.008) TCGA-MP-A4TF-01 2 141081582 141081582 C A LRP1B Nonsense_Mutation p.G4132* 0.09 TCGA-MP-A4TF-01 2 1652372 1652372 G T PXDN Silent p.G1060G 0.15 TCGA-MP-A4TF-01 2 168102830 168102830 G C XIRP2 Missense_Mutation p.R1643T 0.44 benign(0.38) TCGA-MP-A4TF-01 2 179582923 179582923 C A TTN Silent p.L8270L 0.39 TCGA-MP-A4TF-01 2 198953726 198953726 C A PLCL1 Missense_Mutation p.L954M 0.09 tolerated(0.45) benign(0.299) TCGA-MP-A4TF-01 2 206480452 206480452 C T PARD3B Missense_Mutation p.P1116L 0.40 deleterious(0.01) benign(0.028) TCGA-MP-A4TF-01 2 207509321 207509321 G T AC010731.4 RNA 0.15 TCGA-MP-A4TF-01 2 211502540 211502540 G T CPS1 Missense_Mutation p.K940N 0.11 tolerated(0.14) benign(0.004) TCGA-MP-A4TF-01 2 21226161 21226161 C T APOB Missense_Mutation p.V4045I 0.04 benign(0) TCGA-MP-A4TF-01 2 21226163 21226163 C A APOB Missense_Mutation p.R4044M 0.04 possibly_damaging(0.817) TCGA-MP-A4TF-01 2 212295767 212295767 A C ERBB4 Missense_Mutation p.V849G 0.42 deleterious(0) probably_damaging(0.995) TCGA-MP-A4TF-01 2 217234623 217234623 C A MARCH4 Missense_Mutation p.G121C 0.50 deleterious_low_confidence(0.02) possibly_damaging(0.766) TCGA-MP-A4TF-01 2 220072490 220072490 C G ZFAND2B Missense_Mutation p.Q91E 0.20 tolerated(0.45) benign(0.214) TCGA-MP-A4TF-01 2 220423972 220423972 C A OBSL1 Silent p.S1067S 0.10 TCGA-MP-A4TF-01 2 231115750 231115750 C A SP140 Missense_Mutation p.S344Y 0.14 tolerated(0.17) possibly_damaging(0.655) TCGA-MP-A4TF-01 2 231334811 231334811 C T SP100 Missense_Mutation p.S476L 0.33 deleterious(0) possibly_damaging(0.838) TCGA-MP-A4TF-01 2 241528883 241528883 C A CAPN10 Missense_Mutation p.L89M 0.11 tolerated(0.07) probably_damaging(0.951) TCGA-MP-A4TF-01 2 32361989 32361989 C A SPAST Missense_Mutation p.H455Q 0.38 deleterious(0) probably_damaging(1) TCGA-MP-A4TF-01 2 49190099 49190099 C T FSHR Missense_Mutation p.A621T 0.06 deleterious(0) possibly_damaging(0.814) TCGA-MP-A4TF-01 2 50724730 50724730 A T NRXN1 Missense_Mutation p.F914I 0.28 deleterious(0) possibly_damaging(0.864) TCGA-MP-A4TF-01 2 54482987 54482987 G T TSPYL6 Missense_Mutation p.A101D 0.08 tolerated(0.1) benign(0.081) TCGA-MP-A4TF-01 2 58386899 58386899 T G FANCL 3'UTR 0.14 TCGA-MP-A4TF-01 2 61448649 61448649 C T USP34 Silent p.Q2629Q 0.33 TCGA-MP-A4TF-01 2 64863727 64863727 G A SERTAD2 Silent p.T93T 0.09 TCGA-MP-A4TF-01 2 69207142 69207142 T A GKN1 Missense_Mutation p.I152N 0.06 deleterious(0) probably_damaging(0.989) TCGA-MP-A4TF-01 2 7154643 7154643 G C RNF144A Missense_Mutation p.C65S 0.45 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TF-01 2 71742833 71742833 G C DYSF Missense_Mutation p.Q280H 0.18 deleterious(0.04) benign(0.011) TCGA-MP-A4TF-01 2 79384747 79384747 G T REG3A Silent p.P137P 0.08 TCGA-MP-A4TF-01 2 86669144 86669144 G A KDM3A 5'UTR 0.47 TCGA-MP-A4TF-01 2 89196852 89196852 G T IGKV5-2 Missense_Mutation p.W14C 0.58 deleterious(0.04) benign(0.093) TCGA-MP-A4TF-01 2 90139510 90139510 C A IGKV1D-16 Missense_Mutation p.T94N 0.38 deleterious(0) probably_damaging(0.956) TCGA-MP-A4TF-01 2 96947605 96947605 A - SNRNP200 Frame_Shift_Del p.A1658Pfs*4 0.10 TCGA-MP-A4TF-01 2 96955684 96955684 T C SNRNP200 Silent p.R931R 0.08 TCGA-MP-A4TF-01 3 111356058 111356058 C A CD96 Missense_Mutation p.P462H 0.28 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TF-01 3 123427737 123427737 G T MYLK Missense_Mutation p.P650T 0.17 deleterious(0) benign(0.005) TCGA-MP-A4TF-01 3 128706631 128706631 C G KIAA1257 Silent p.S165S 0.50 TCGA-MP-A4TF-01 3 129810184 129810184 T C RP11-93K22.13 Intron 0.09 TCGA-MP-A4TF-01 3 138219359 138219360 GA - CEP70 Frame_Shift_Del p.F473Sfs*5 0.29 TCGA-MP-A4TF-01 3 142094688 142094688 C G XRN1 Missense_Mutation p.W977S 0.16 deleterious(0) probably_damaging(0.993) TCGA-MP-A4TF-01 3 147131163 147131163 G T ZIC1 Missense_Mutation p.G390V 0.22 deleterious(0.03) benign(0.134) TCGA-MP-A4TF-01 3 14744759 14744759 T C C3orf20 Missense_Mutation p.C290R 0.28 deleterious(0) probably_damaging(1) TCGA-MP-A4TF-01 3 160786693 160786693 G T PPM1L Silent p.V277V 0.43 TCGA-MP-A4TF-01 3 161146916 161146916 T G RP11-3P17.5 RNA 0.08 TCGA-MP-A4TF-01 3 167167118 167167118 G T SERPINI2 Missense_Mutation p.A346D 0.20 deleterious(0) probably_damaging(0.984) TCGA-MP-A4TF-01 3 17109492 17109492 G A PLCL2 Missense_Mutation p.G921S 0.29 deleterious(0.05) probably_damaging(0.998) TCGA-MP-A4TF-01 3 173997160 173997160 C A NLGN1 Missense_Mutation p.L457M 0.26 tolerated(0.1) probably_damaging(0.997) TCGA-MP-A4TF-01 3 180675715 180675718 ACGT - FXR1 Splice_Site p.X330_splice 0.16 TCGA-MP-A4TF-01 3 183882070 183882070 G T DVL3 Missense_Mutation p.G83C 0.09 deleterious(0) possibly_damaging(0.506) TCGA-MP-A4TF-01 3 184005667 184005667 G T ECE2 Missense_Mutation p.D554Y 0.30 deleterious(0.03) probably_damaging(1) TCGA-MP-A4TF-01 3 190106098 190106098 C A CLDN16 Missense_Mutation p.P64T 0.33 deleterious_low_confidence(0.03) benign(0.007) TCGA-MP-A4TF-01 3 49848010 49848010 C A UBA7 Missense_Mutation p.M469I 0.27 deleterious(0) probably_damaging(0.938) TCGA-MP-A4TF-01 3 73432744 73432744 C A PDZRN3 Silent p.R991R 0.28 TCGA-MP-A4TF-01 3 95374269 95374269 C A MTHFD2P1 RNA 0.22 TCGA-MP-A4TF-01 4 148944525 148944525 C - ARHGAP10 Frame_Shift_Del p.V611Wfs*37 0.11 TCGA-MP-A4TF-01 4 164449875 164449875 G T MARCH1 3'UTR 0.42 TCGA-MP-A4TF-01 4 20529948 20529948 C T SLIT2 Intron 0.16 TCGA-MP-A4TF-01 4 23830166 23830166 C A PPARGC1A Missense_Mutation p.R205L 0.29 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TF-01 4 24541830 24541830 C A DHX15 Missense_Mutation p.A563S 0.18 tolerated(0.55) benign(0.437) TCGA-MP-A4TF-01 4 2831222 2831222 G T SH3BP2 Missense_Mutation p.A254S 0.23 tolerated_low_confidence(0.47) benign(0.024) TCGA-MP-A4TF-01 4 46979147 46979147 C A GABRA4 Missense_Mutation p.A170S 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-MP-A4TF-01 4 57219586 57219586 T C AASDH Silent p.L520L 0.30 TCGA-MP-A4TF-01 4 70513163 70513163 G - UGT2A1 Frame_Shift_Del p.P67Hfs*3 0.20 TCGA-MP-A4TF-01 4 7069712 7069712 C A GRPEL1 Missense_Mutation p.L16F 0.37 tolerated(0.1) benign(0.002) TCGA-MP-A4TF-01 4 8603120 8603120 C G CPZ Missense_Mutation p.P131R 0.22 tolerated(0.49) benign(0.034) TCGA-MP-A4TF-01 4 90170970 90170970 C A GPRIN3 Missense_Mutation p.G98C 0.43 tolerated(0.06) benign(0.283) TCGA-MP-A4TF-01 4 9783854 9783854 G T DRD5 Silent p.R67R 0.38 TCGA-MP-A4TF-01 5 100147501 100147501 C A ST8SIA4 3'UTR 0.22 TCGA-MP-A4TF-01 5 101585493 101585493 C A SLCO4C1 Splice_Site p.X490_splice 0.20 TCGA-MP-A4TF-01 5 112420977 112420977 C T MCC Missense_Mutation p.V477M 0.26 tolerated(0.25) benign(0.415) TCGA-MP-A4TF-01 5 11411701 11411701 C T CTNND2 Missense_Mutation p.R129K 0.32 deleterious(0.03) benign(0.099) TCGA-MP-A4TF-01 5 128369044 128369044 G C SLC27A6 3'UTR 0.33 TCGA-MP-A4TF-01 5 135587487 135587487 C G TRPC7 Missense_Mutation p.G477R 0.21 deleterious(0.03) possibly_damaging(0.843) TCGA-MP-A4TF-01 5 137803195 137803195 G A EGR1 Missense_Mutation p.D353N 0.23 deleterious(0.01) unknown(0) TCGA-MP-A4TF-01 5 140175683 140175683 C A PCDHA2 Missense_Mutation p.D378E 0.24 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-MP-A4TF-01 5 140201877 140201877 C A PCDHA5 Missense_Mutation p.P173T 0.30 tolerated_low_confidence(0.1) benign(0.226) TCGA-MP-A4TF-01 5 140228945 140228945 A G PCDHA9 Missense_Mutation p.I289V 0.33 tolerated_low_confidence(1) benign(0.006) TCGA-MP-A4TF-01 5 140432648 140432648 G T PCDHB1 Silent p.V531V 0.28 TCGA-MP-A4TF-01 5 140516278 140516278 C T PCDHB5 Missense_Mutation p.T421I 0.23 deleterious_low_confidence(0.01) benign(0.13) TCGA-MP-A4TF-01 5 140554443 140554443 C G PCDHB7 Missense_Mutation p.A676G 0.30 tolerated_low_confidence(0.08) benign(0.031) TCGA-MP-A4TF-01 5 140572578 140572578 A T PCDHB10 Silent p.A151A 0.27 TCGA-MP-A4TF-01 5 140755457 140755457 T A PCDHGA6 Missense_Mutation p.W603R 0.31 deleterious_low_confidence(0) possibly_damaging(0.744) TCGA-MP-A4TF-01 5 156381729 156381729 C G TIMD4 Missense_Mutation p.G33R 0.19 deleterious(0) probably_damaging(1) TCGA-MP-A4TF-01 5 168180868 168180868 C T SLIT3 Splice_Site p.X610_splice 0.17 TCGA-MP-A4TF-01 5 176311047 176311047 C A HK3 Missense_Mutation p.R649L 0.14 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TF-01 5 176311048 176311048 G T HK3 Missense_Mutation p.R649S 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-MP-A4TF-01 5 180582841 180582841 G A OR2V2 Missense_Mutation p.G300E 0.38 tolerated(0.17) benign(0.049) TCGA-MP-A4TF-01 5 180665099 180665099 C T GNB2L1 Nonsense_Mutation p.W259* 0.13 TCGA-MP-A4TF-01 5 24593505 24593505 G T CDH10 Missense_Mutation p.P32Q 0.30 tolerated(0.22) benign(0.006) TCGA-MP-A4TF-01 5 34020776 34020776 A T C1QTNF3 Missense_Mutation p.V291D 0.08 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TF-01 5 35857044 35857044 C T IL7R 5'UTR 0.16 TCGA-MP-A4TF-01 5 38886172 38886172 A G OSMR Missense_Mutation p.K291E 0.26 tolerated(0.23) benign(0.146) TCGA-MP-A4TF-01 5 54398579 54398579 A G GZMA Silent p.E23E 0.07 TCGA-MP-A4TF-01 5 6753016 6753016 G A PAPD7 Missense_Mutation p.G434R 0.05 tolerated_low_confidence(0.06) benign(0.303) TCGA-MP-A4TF-01 5 79734766 79734766 G T ZFYVE16 Missense_Mutation p.M754I 0.25 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TF-01 5 87564610 87564610 G C TMEM161B 5'UTR 0.14 TCGA-MP-A4TF-01 5 89953995 89953995 G T GPR98 Missense_Mutation p.G1551V 0.20 benign(0.441) TCGA-MP-A4TF-01 5 94903724 94903724 G T ARSK Silent p.L129L 0.15 TCGA-MP-A4TF-01 6 108616295 108616295 C G LACE1 Silent p.S4S 0.44 TCGA-MP-A4TF-01 6 108616316 108616316 G T LACE1 Silent p.L11L 0.51 TCGA-MP-A4TF-01 6 109179403 109179403 C T ARMC2 Missense_Mutation p.L74F 0.40 deleterious(0) possibly_damaging(0.896) TCGA-MP-A4TF-01 6 121563451 121563451 G A TBC1D32 Silent p.L685L 0.30 TCGA-MP-A4TF-01 6 132195472 132195472 A G ENPP1 Missense_Mutation p.M544V 0.43 deleterious(0) probably_damaging(0.984) TCGA-MP-A4TF-01 6 159461846 159461846 G T TAGAP Missense_Mutation p.P166T 0.14 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TF-01 6 160212138 160212138 C T MRPL18 Silent p.P73P 0.22 TCGA-MP-A4TF-01 6 17761007 17761007 G C KIF13A 3'Flank 0.13 TCGA-MP-A4TF-01 6 24205414 24205414 T G DCDC2 Intron 0.07 TCGA-MP-A4TF-01 6 24784384 24784384 A T GMNN Missense_Mutation p.K115M 0.15 deleterious(0) probably_damaging(0.946) TCGA-MP-A4TF-01 6 27925276 27925276 C A OR2B6 Nonsense_Mutation p.C86* 0.25 TCGA-MP-A4TF-01 6 28268598 28268598 T A PGBD1 Missense_Mutation p.W323R 0.10 tolerated_low_confidence(0.12) probably_damaging(0.998) TCGA-MP-A4TF-01 6 29627124 29627124 C A MOG Missense_Mutation p.H39Q 0.43 tolerated(0.23) benign(0.007) TCGA-MP-A4TF-01 6 29796362 29796362 C A HLA-G Missense_Mutation p.S129Y 0.07 deleterious_low_confidence(0) possibly_damaging(0.86) TCGA-MP-A4TF-01 6 29796363 29796363 C G HLA-G Silent p.S129S 0.07 TCGA-MP-A4TF-01 6 30653377 30653377 C G PPP1R18 Missense_Mutation p.R140T 0.08 deleterious_low_confidence(0) benign(0.311) TCGA-MP-A4TF-01 6 30675938 30675938 C A MDC1 Silent p.G806G 0.08 TCGA-MP-A4TF-01 6 32185835 32185835 G T NOTCH4 Missense_Mutation p.P521T 0.19 deleterious(0) probably_damaging(1) TCGA-MP-A4TF-01 6 35480629 35480629 G A TULP1 Silent p.L3L 0.47 TCGA-MP-A4TF-01 6 35773498 35773498 C A LHFPL5 Missense_Mutation p.N17K 0.23 deleterious(0.04) benign(0.16) TCGA-MP-A4TF-01 6 43097973 43097973 C T PTK7 Missense_Mutation p.T167I 0.28 tolerated(0.11) benign(0.103) TCGA-MP-A4TF-01 6 44268383 44268383 C G AARS2 Missense_Mutation p.K953N 0.09 tolerated(0.1) possibly_damaging(0.838) TCGA-MP-A4TF-01 6 54806504 54806504 C A FAM83B Missense_Mutation p.P912H 0.40 deleterious(0.01) benign(0.422) TCGA-MP-A4TF-01 6 84799290 84799290 G A MRAP2 3'UTR 0.14 TCGA-MP-A4TF-01 6 97634566 97634566 C T MMS22L Silent p.R680R 0.51 TCGA-MP-A4TF-01 7 100675087 100675087 C A MUC17 Silent p.P130P 0.18 TCGA-MP-A4TF-01 7 113518976 113518976 T C PPP1R3A Missense_Mutation p.K724R 0.06 deleterious(0.04) benign(0.167) TCGA-MP-A4TF-01 7 11486862 11486862 A G THSD7A Missense_Mutation p.L932P 0.09 deleterious(0.02) benign(0.012) TCGA-MP-A4TF-01 7 120906445 120906445 G T CPED1 Missense_Mutation p.W825C 0.19 deleterious(0) probably_damaging(1) TCGA-MP-A4TF-01 7 123296014 123296014 G A LMOD2 5'UTR 0.27 TCGA-MP-A4TF-01 7 124510965 124510965 C A POT1 Missense_Mutation p.K85N 0.26 deleterious(0) probably_damaging(0.968) TCGA-MP-A4TF-01 7 127670418 127670418 G A LRRC4 Silent p.A92A 0.12 TCGA-MP-A4TF-01 7 128477712 128477712 C A FLNC Missense_Mutation p.T291N 0.20 tolerated(0.2) benign(0.395) TCGA-MP-A4TF-01 7 128489515 128489515 G A FLNC Silent p.V1694V 0.19 TCGA-MP-A4TF-01 7 128493840 128493840 C A FLNC Missense_Mutation p.P2145T 0.23 tolerated(0.07) benign(0.059) TCGA-MP-A4TF-01 7 129049315 129049315 A C AHCYL2 Splice_Site p.X432_splice 0.05 TCGA-MP-A4TF-01 7 137597695 137597695 C A CREB3L2 Intron 0.40 TCGA-MP-A4TF-01 7 137597699 137597699 A T CREB3L2 Intron 0.40 TCGA-MP-A4TF-01 7 141803203 141803203 C T MGAM Silent p.V1820V 0.25 TCGA-MP-A4TF-01 7 142460862 142460862 C G PRSS1 Silent p.A245A 0.06 TCGA-MP-A4TF-01 7 142637651 142637651 C A C7orf34 Missense_Mutation p.L141I 0.32 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-MP-A4TF-01 7 143701383 143701383 G A OR6B1 Missense_Mutation p.M98I 0.10 tolerated(0.13) probably_damaging(0.991) TCGA-MP-A4TF-01 7 149559007 149559007 G T ZNF862 Missense_Mutation p.D920Y 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-MP-A4TF-01 7 150839652 150839652 A G AGAP3 Missense_Mutation p.N735S 0.15 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TF-01 7 154876187 154876187 G T HTR5A Missense_Mutation p.R355M 0.22 deleterious(0) possibly_damaging(0.713) TCGA-MP-A4TF-01 7 20698292 20698292 T A ABCB5 Missense_Mutation p.L567Q 0.16 deleterious(0) probably_damaging(1) TCGA-MP-A4TF-01 7 27194830 27194830 T G HOXA7 Missense_Mutation p.K131Q 0.09 deleterious(0) probably_damaging(0.99) TCGA-MP-A4TF-01 7 2974248 2974248 G T CARD11 Missense_Mutation p.L453M 0.06 tolerated(0.1) benign(0.285) TCGA-MP-A4TF-01 7 32910118 32910118 C G KBTBD2 Silent p.L237L 0.08 TCGA-MP-A4TF-01 7 37907472 37907472 C A NME8 Missense_Mutation p.P264T 0.38 tolerated(0.31) benign(0.001) TCGA-MP-A4TF-01 7 48567860 48567860 C A ABCA13 Missense_Mutation p.A4758D 0.44 possibly_damaging(0.71) TCGA-MP-A4TF-01 7 5568059 5568059 C A ACTB Missense_Mutation p.V219F 0.14 deleterious_low_confidence(0) possibly_damaging(0.716) TCGA-MP-A4TF-01 7 56174072 56174072 A T CHCHD2 Missense_Mutation p.M12K 0.21 tolerated(0.28) unknown(0) TCGA-MP-A4TF-01 7 57200007 57200007 C A ZNF479 Nonsense_Mutation p.G9* 0.30 TCGA-MP-A4TF-01 7 63727072 63727072 G T ZNF679 Missense_Mutation p.C354F 0.36 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TF-01 7 64168798 64168798 A G ZNF107 Missense_Mutation p.N706D 0.10 tolerated(0.49) benign(0.358) TCGA-MP-A4TF-01 7 73635038 73635038 C T LAT2 Silent p.S102S 0.35 TCGA-MP-A4TF-01 7 74237255 74237255 C A GTF2IRD2 Missense_Mutation p.G147W 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-MP-A4TF-01 7 81594981 81594981 C A CACNA2D1 Missense_Mutation p.V835L 0.12 tolerated(0.59) benign(0.048) TCGA-MP-A4TF-01 7 87170775 87170775 A T ABCB1 Missense_Mutation p.F739L 0.15 deleterious(0.02) benign(0.233) TCGA-MP-A4TF-01 7 87170780 87170780 C T ABCB1 Missense_Mutation p.V738I 0.13 tolerated(0.45) benign(0.002) TCGA-MP-A4TF-01 7 88847551 88847551 A G ZNF804B Missense_Mutation p.Y64C 0.31 deleterious(0) probably_damaging(1) TCGA-MP-A4TF-01 7 93055545 93055545 C A CALCR 3'UTR 0.31 TCGA-MP-A4TF-01 7 93055547 93055547 C A CALCR 3'UTR 0.33 TCGA-MP-A4TF-01 7 93065265 93065265 T A CALCR Missense_Mutation p.Q417L 0.30 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TF-01 7 98581766 98581766 A T TRRAP Missense_Mutation p.N3029Y 0.35 possibly_damaging(0.727) TCGA-MP-A4TF-01 7 99032727 99032727 T A ATP5J2-PTCD1 Missense_Mutation p.S96C 0.29 tolerated(0.19) benign(0.032) TCGA-MP-A4TF-01 7 99869631 99869631 C A GATS 5'UTR 0.40 TCGA-MP-A4TF-01 7 99869632 99869632 C A GATS 5'UTR 0.40 TCGA-MP-A4TF-01 8 105361083 105361083 T A DCSTAMP Silent p.A101A 0.36 TCGA-MP-A4TF-01 8 10555335 10555335 C A C8orf74 Silent p.G156G 0.33 TCGA-MP-A4TF-01 8 10555359 10555359 C T C8orf74 Silent p.H164H 0.31 TCGA-MP-A4TF-01 8 110100421 110100421 C A TRHR Missense_Mutation p.P227H 0.28 tolerated(0.09) benign(0.081) TCGA-MP-A4TF-01 8 113236962 113236962 C A CSMD3 3'UTR 0.38 TCGA-MP-A4TF-01 8 113277760 113277760 C A CSMD3 Missense_Mutation p.V3190L 0.27 tolerated(0.23) benign(0.058) TCGA-MP-A4TF-01 8 116617089 116617089 C A TRPS1 Missense_Mutation p.Q369H 0.33 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-MP-A4TF-01 8 121509713 121509713 T G MTBP Missense_Mutation p.F510V 0.26 tolerated(0.08) possibly_damaging(0.859) TCGA-MP-A4TF-01 8 128428269 128428269 C A POU5F1B Missense_Mutation p.P53Q 0.23 deleterious(0) possibly_damaging(0.739) TCGA-MP-A4TF-01 8 143958520 143958520 G T CYP11B1 Missense_Mutation p.L172M 0.36 tolerated(0.08) probably_damaging(0.999) TCGA-MP-A4TF-01 8 144621379 144621379 C A ZC3H3 Missense_Mutation p.R53L 0.33 tolerated(0.23) benign(0.268) TCGA-MP-A4TF-01 8 17422489 17422489 G T SLC7A2 Missense_Mutation p.R644I 0.45 deleterious(0.04) possibly_damaging(0.535) TCGA-MP-A4TF-01 8 25161794 25161794 C T DOCK5 Missense_Mutation p.H334Y 0.38 deleterious(0.03) benign(0.209) TCGA-MP-A4TF-01 8 3019793 3019793 C A CSMD1 Missense_Mutation p.G1911V 0.38 benign(0.138) TCGA-MP-A4TF-01 8 48715952 48715952 G C PRKDC Missense_Mutation p.S3278R 0.09 possibly_damaging(0.805) TCGA-MP-A4TF-01 8 59515859 59515859 G T NSMAF Missense_Mutation p.L350I 0.23 tolerated(0.27) possibly_damaging(0.61) TCGA-MP-A4TF-01 8 67039489 67039489 G A TRIM55 5'UTR 0.20 TCGA-MP-A4TF-01 8 77616945 77616945 G T ZFHX4 Missense_Mutation p.D208Y 0.29 probably_damaging(0.963) TCGA-MP-A4TF-01 8 87738863 87738863 G T CNGB3 Silent p.S78S 0.29 TCGA-MP-A4TF-01 8 88885795 88885795 C A DCAF4L2 Silent p.L135L 0.25 TCGA-MP-A4TF-01 8 9599184 9599184 C T TNKS Intron 0.41 TCGA-MP-A4TF-01 9 119461837 119461837 G A TRIM32 Missense_Mutation p.G606R 0.19 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TF-01 9 12821465 12821465 G T LURAP1L Missense_Mutation p.M131I 0.43 tolerated(0.1) benign(0.027) TCGA-MP-A4TF-01 9 137982046 137982046 G T OLFM1 Silent p.L34L 0.32 TCGA-MP-A4TF-01 9 138678316 138678316 G T KCNT1 Nonsense_Mutation p.E1151* 0.35 TCGA-MP-A4TF-01 9 15468704 15468707 TCTT - PSIP1 Frame_Shift_Del p.Q447Hfs*21 0.22 TCGA-MP-A4TF-01 9 18928274 18928274 G A FAM154A Missense_Mutation p.P401S 0.20 tolerated(0.05) possibly_damaging(0.806) TCGA-MP-A4TF-01 9 82267570 82267570 C A TLE4 Missense_Mutation p.H151Q 0.17 tolerated(0.07) benign(0.429) TCGA-MP-A4TF-01 9 91943789 91943789 A T SECISBP2 Silent p.A263A 0.38 TCGA-MP-A4TF-01 9 96051832 96051832 G T WNK2 Missense_Mutation p.G1636V 0.25 unknown(0) TCGA-MP-A4TF-01 X 100808215 100808215 G T ARMCX1 Missense_Mutation p.G101V 0.15 deleterious_low_confidence(0.01) benign(0.007) TCGA-MP-A4TF-01 X 101911168 101911168 G T GPRASP1 Missense_Mutation p.G776V 0.12 deleterious(0.01) benign(0.019) TCGA-MP-A4TF-01 X 10423065 10423065 G C MID1 Silent p.S500S 0.10 TCGA-MP-A4TF-01 X 104465032 104465032 A G TEX13A Missense_Mutation p.V17A 0.12 deleterious(0) probably_damaging(0.928) TCGA-MP-A4TF-01 X 110494191 110494191 G T CAPN6 Nonsense_Mutation p.S371* 0.13 TCGA-MP-A4TF-01 X 114540880 114540880 C T LUZP4 Silent p.G151G 0.19 TCGA-MP-A4TF-01 X 117960381 117960381 C T ZCCHC12 Missense_Mutation p.P392S 0.08 tolerated_low_confidence(0.21) benign(0.023) TCGA-MP-A4TF-01 X 118223007 118223007 C A KIAA1210 Missense_Mutation p.C729F 0.19 tolerated(0.49) benign(0.013) TCGA-MP-A4TF-01 X 118708684 118708684 C A UBE2A Missense_Mutation p.P4T 0.20 tolerated(0.17) benign(0.025) TCGA-MP-A4TF-01 X 119211088 119211088 C - RHOXF2B Frame_Shift_Del p.G82Afs*90 0.11 TCGA-MP-A4TF-01 X 128614691 128614691 G A SMARCA1 Missense_Mutation p.T810I 0.23 tolerated(0.06) possibly_damaging(0.657) TCGA-MP-A4TF-01 X 130410142 130410142 C T IGSF1 Missense_Mutation p.G902R 0.25 deleterious(0.01) probably_damaging(0.976) TCGA-MP-A4TF-01 X 135314096 135314096 C A MAP7D3 Silent p.V340V 0.12 TCGA-MP-A4TF-01 X 135741382 135741382 C A CD40LG Silent p.P198P 0.11 TCGA-MP-A4TF-01 X 13753406 13753406 G A OFD1 Missense_Mutation p.E18K 0.24 deleterious(0) probably_damaging(0.957) TCGA-MP-A4TF-01 X 138870421 138870421 T C ATP11C Missense_Mutation p.T487A 0.12 tolerated(0.78) benign(0.012) TCGA-MP-A4TF-01 X 138870464 138870464 A T ATP11C Nonsense_Mutation p.C472* 0.08 TCGA-MP-A4TF-01 X 139038364 139038364 G T CXorf66 Missense_Mutation p.N259K 0.08 tolerated(0.15) possibly_damaging(0.859) TCGA-MP-A4TF-01 X 140953352 140953352 G T MAGEC3 Missense_Mutation p.Q73H 0.23 deleterious_low_confidence(0) benign(0.216) TCGA-MP-A4TF-01 X 140969237 140969237 G T MAGEC3 Silent p.V188V 0.08 TCGA-MP-A4TF-01 X 141291122 141291122 C A MAGEC2 Missense_Mutation p.G218C 0.13 deleterious(0.01) probably_damaging(1) TCGA-MP-A4TF-01 X 142596720 142596720 G C SPANXN3 Nonsense_Mutation p.S117* 0.14 TCGA-MP-A4TF-01 X 151283809 151283809 G T RP11-1007I13.4 RNA 0.09 TCGA-MP-A4TF-01 X 152158990 152158990 C A PNMA5 Missense_Mutation p.G385C 0.37 deleterious(0.01) possibly_damaging(0.646) TCGA-MP-A4TF-01 X 152159629 152159629 C A PNMA5 Nonsense_Mutation p.E172* 0.08 TCGA-MP-A4TF-01 X 153033039 153033039 G A PLXNB3 Missense_Mutation p.A276T 0.44 tolerated(0.53) benign(0.234) TCGA-MP-A4TF-01 X 15381328 15381328 C A FIGF Missense_Mutation p.R68S 0.09 deleterious(0.02) benign(0.356) TCGA-MP-A4TF-01 X 153880387 153880387 G T CTAG2 3'UTR 0.27 TCGA-MP-A4TF-01 X 154736621 154736621 G A TMLHE Silent p.H311H 0.13 TCGA-MP-A4TF-01 X 15809060 15809061 - A ZRSR2 Frame_Shift_Ins p.Y18Vfs*37 0.12 TCGA-MP-A4TF-01 X 16773128 16773128 A T SYAP1 Silent p.S212S 0.24 TCGA-MP-A4TF-01 X 34150079 34150079 T G FAM47A Missense_Mutation p.K106T 0.05 tolerated(0.49) probably_damaging(0.943) TCGA-MP-A4TF-01 X 37027759 37027759 C T FAM47C Missense_Mutation p.L426F 0.22 tolerated_low_confidence(0.23) probably_damaging(0.994) TCGA-MP-A4TF-01 X 45051016 45051016 G T CXorf36 Missense_Mutation p.L160I 0.10 tolerated(0.1) probably_damaging(0.997) TCGA-MP-A4TF-01 X 48378930 48378930 G A PORCN 3'UTR 0.18 TCGA-MP-A4TF-01 X 48631956 48631956 G T GLOD5 3'UTR 0.14 TCGA-MP-A4TF-01 X 48929488 48929488 G T AF196779.12 3'UTR 0.18 TCGA-MP-A4TF-01 X 53114910 53114910 A T TSPYL2 Missense_Mutation p.T446S 0.13 deleterious_low_confidence(0.03) benign(0.032) TCGA-MP-A4TF-01 X 53432308 53432308 C G SMC1A Missense_Mutation p.G643R 0.16 deleterious(0) probably_damaging(1) TCGA-MP-A4TF-01 X 53458305 53458305 A G HSD17B10 3'UTR 0.20 TCGA-MP-A4TF-01 X 53458307 53458307 G T HSD17B10 3'UTR 0.20 TCGA-MP-A4TF-01 X 54472587 54472587 G A FGD1 Silent p.A947A 0.10 TCGA-MP-A4TF-01 X 55033565 55033565 G C APEX2 Missense_Mutation p.M418I 0.12 tolerated(0.21) benign(0.005) TCGA-MP-A4TF-01 X 55041424 55041424 C - ALAS2 Frame_Shift_Del p.G398Afs*35 0.18 TCGA-MP-A4TF-01 X 6069339 6069339 C A NLGN4X Missense_Mutation p.G57C 0.22 deleterious(0) probably_damaging(1) TCGA-MP-A4TF-01 X 6069340 6069340 C A NLGN4X Silent p.R56R 0.22 TCGA-MP-A4TF-01 X 65486331 65486331 G T HEPH Missense_Mutation p.M1152I 0.14 tolerated(0.42) benign(0.001) TCGA-MP-A4TF-01 X 69649360 69649360 G T GDPD2 Silent p.G318G 0.13 TCGA-MP-A4TF-01 X 70325862 70325862 G A CXorf65 Missense_Mutation p.R80C 0.08 tolerated(0.09) probably_damaging(0.97) TCGA-MP-A4TF-01 X 70349190 70349190 C A MED12 Missense_Mutation p.S1201Y 0.16 benign(0.108) TCGA-MP-A4TF-01 X 71802254 71802254 T C PHKA1 Silent p.Q1164Q 0.22 TCGA-MP-A4TF-01 X 73740856 73740856 C A SLC16A2 Silent p.I154I 0.07 TCGA-MP-A4TF-01 X 77365415 77365415 G T PGK1 Splice_Site p.X39_splice 0.14 TCGA-MP-A4TF-01 X 83129040 83129040 G T CYLC1 Nonsense_Mutation p.E442* 0.26 TCGA-MP-A4TF-01 X 84510303 84510303 C G ZNF711 Missense_Mutation p.H40D 0.16 deleterious_low_confidence(0.03) benign(0.053) TCGA-MP-A4TF-01 X 86087118 86087118 A G DACH2 Missense_Mutation p.Y587C 0.12 tolerated_low_confidence(0.11) possibly_damaging(0.525) TCGA-MP-A4TF-01 X 88009036 88009036 C A CPXCR1 Silent p.P207P 0.13 TCGA-MP-A4TF-01 X 91134048 91134048 C T PCDH11X Nonsense_Mutation p.R937* 0.13 TCGA-MP-A4TH-01 10 120917526 120917526 G A SFXN4 Missense_Mutation p.P137S 0.22 tolerated(0.4) benign(0.16) TCGA-MP-A4TH-01 10 21805251 21805251 C A SKIDA1 Missense_Mutation p.D501Y 0.08 deleterious_low_confidence(0) unknown(0) TCGA-MP-A4TH-01 10 95429496 95429496 T C FRA10AC1 3'UTR 0.22 TCGA-MP-A4TH-01 11 123598272 123598272 G A ZNF202 Silent p.S288S 0.22 TCGA-MP-A4TH-01 11 15994282 15994282 G C SOX6 3'UTR 0.19 TCGA-MP-A4TH-01 11 36595703 36595703 C A RAG1 Missense_Mutation p.F283L 0.17 tolerated_low_confidence(0.39) benign(0.011) TCGA-MP-A4TH-01 11 55065393 55065393 G T TRIM51HP RNA 0.17 TCGA-MP-A4TH-01 11 56468240 56468240 C T OR9G1 Missense_Mutation p.S126F 0.08 deleterious(0.01) benign(0.064) TCGA-MP-A4TH-01 11 60048145 60048145 C G MS4A4A 5'UTR 0.21 TCGA-MP-A4TH-01 11 92577545 92577545 G A FAT3 Missense_Mutation p.R3671H 0.16 possibly_damaging(0.749) TCGA-MP-A4TH-01 12 26276042 26276042 G A BHLHE41 Nonsense_Mutation p.Q136* 0.29 TCGA-MP-A4TH-01 12 40044124 40044124 A G C12orf40 Silent p.T218T 0.18 TCGA-MP-A4TH-01 12 4479533 4479533 G C FGF23 Missense_Mutation p.C244W 0.17 deleterious_low_confidence(0) probably_damaging(0.936) TCGA-MP-A4TH-01 12 51097973 51097973 C T DIP2B Silent p.I792I 0.14 TCGA-MP-A4TH-01 12 85450464 85450464 A G LRRIQ1 Silent p.Q631Q 0.11 TCGA-MP-A4TH-01 13 32910990 32910990 T G BRCA2 Missense_Mutation p.L833R 0.20 deleterious(0.05) benign(0.373) TCGA-MP-A4TH-01 13 46544074 46544074 G A ZC3H13 Nonsense_Mutation p.R869* 0.19 TCGA-MP-A4TH-01 14 105061390 105061390 C T TMEM179 3'UTR 0.17 TCGA-MP-A4TH-01 14 68050718 68050718 G T PLEKHH1 Silent p.L1192L 0.13 TCGA-MP-A4TH-01 14 95688087 95688087 G C CLMN Missense_Mutation p.H89D 0.09 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TH-01 15 43572113 43572113 G A TGM7 Missense_Mutation p.S463F 0.19 tolerated(0.08) possibly_damaging(0.736) TCGA-MP-A4TH-01 15 45007690 45007690 A G B2M Missense_Mutation p.Y46C 0.24 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TH-01 15 48052582 48052582 A G SEMA6D Missense_Mutation p.K64R 0.14 tolerated(0.87) possibly_damaging(0.685) TCGA-MP-A4TH-01 15 65559053 65559053 C T PARP16 Silent p.P122P 0.13 TCGA-MP-A4TH-01 15 69347710 69347710 C A NOX5 Missense_Mutation p.A679E 0.22 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TH-01 16 2333334 2333334 A T ABCA3 Nonsense_Mutation p.Y1296* 0.18 TCGA-MP-A4TH-01 16 2333341 2333341 T G ABCA3 Missense_Mutation p.N1294T 0.21 deleterious(0.02) benign(0.175) TCGA-MP-A4TH-01 16 71318455 71318455 C T CMTR2 Missense_Mutation p.D457N 0.15 tolerated(0.06) benign(0.033) TCGA-MP-A4TH-01 16 84256090 84256090 G A KCNG4 Silent p.G431G 0.29 TCGA-MP-A4TH-01 17 46423351 46423351 C G SKAP1 Missense_Mutation p.D66H 0.27 deleterious(0) probably_damaging(0.913) TCGA-MP-A4TH-01 17 47075159 47075159 T A IGF2BP1 Missense_Mutation p.L18M 0.23 deleterious(0.01) probably_damaging(0.991) TCGA-MP-A4TH-01 17 47246047 47246047 G A B4GALNT2 Missense_Mutation p.G427D 0.14 deleterious(0) probably_damaging(1) TCGA-MP-A4TH-01 17 62964219 62964219 T A AMZ2P1 RNA 0.23 TCGA-MP-A4TH-01 17 8192461 8192461 C T SLC25A35 3'UTR 0.51 TCGA-MP-A4TH-01 18 11852092 11852092 C T CHMP1B Silent p.R194R 0.31 TCGA-MP-A4TH-01 18 39575888 39575890 CCC GCCG PIK3C3 Frame_Shift_Ins p.A274Gfs*10 0.26 TCGA-MP-A4TH-01 18 56586594 56586594 C T ZNF532 Missense_Mutation p.P359S 0.16 deleterious(0) possibly_damaging(0.897) TCGA-MP-A4TH-01 19 14569168 14569168 A T PKN1 Missense_Mutation p.Q473L 0.28 deleterious(0.01) possibly_damaging(0.905) TCGA-MP-A4TH-01 19 37210704 37210704 A T ZNF567 Missense_Mutation p.T329S 0.27 tolerated(0.43) probably_damaging(0.981) TCGA-MP-A4TH-01 19 37367862 37367862 G T ZNF345 Missense_Mutation p.D44Y 0.30 tolerated(0.08) benign(0.122) TCGA-MP-A4TH-01 19 44981877 44981877 C A ZNF180 Missense_Mutation p.G274V 0.12 tolerated(0.1) benign(0.011) TCGA-MP-A4TH-01 19 45998092 45998092 C T RTN2 Missense_Mutation p.R84H 0.11 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-MP-A4TH-01 19 53571582 53571582 A G ZNF160 Silent p.C735C 0.34 TCGA-MP-A4TH-01 19 54967417 54967417 C T LENG8 Missense_Mutation p.R433C 0.29 deleterious(0) possibly_damaging(0.9) TCGA-MP-A4TH-01 19 55718224 55718224 T C PTPRH Missense_Mutation p.N62S 0.28 benign(0.063) TCGA-MP-A4TH-01 19 56329269 56329269 C T NLRP11 Splice_Site p.X91_splice 0.36 TCGA-MP-A4TH-01 19 56704345 56704345 A C ZSCAN5B Missense_Mutation p.V26G 0.31 deleterious(0.02) possibly_damaging(0.475) TCGA-MP-A4TH-01 19 881567 881567 G C MED16 Missense_Mutation p.P378R 0.27 deleterious(0) probably_damaging(0.942) TCGA-MP-A4TH-01 1 111494366 111494366 G C LRIF1 Missense_Mutation p.D380E 0.20 tolerated(0.11) possibly_damaging(0.866) TCGA-MP-A4TH-01 1 173780306 173780306 T A CENPL Silent p.P44P 0.17 TCGA-MP-A4TH-01 1 180243354 180243354 T C LHX4 Silent p.N271N 0.31 TCGA-MP-A4TH-01 1 200635197 200635197 C A DDX59 Missense_Mutation p.E224D 0.09 tolerated(0.18) benign(0.014) TCGA-MP-A4TH-01 1 200635199 200635199 C A DDX59 Nonsense_Mutation p.E224* 0.10 TCGA-MP-A4TH-01 1 214560259 214560259 G A PTPN14 Nonsense_Mutation p.Q332* 0.14 TCGA-MP-A4TH-01 1 215901478 215901478 T C USH2A Missense_Mutation p.K3987R 0.29 benign(0.009) TCGA-MP-A4TH-01 1 21771605 21771605 G T NBPF3 Missense_Mutation p.G9V 0.20 deleterious_low_confidence(0.01) probably_damaging(0.972) TCGA-MP-A4TH-01 1 221054572 221054572 G T HLX Missense_Mutation p.G210V 0.27 deleterious(0) probably_damaging(0.953) TCGA-MP-A4TH-01 1 234541755 234541755 T A TARBP1 Nonsense_Mutation p.K1295* 0.20 TCGA-MP-A4TH-01 1 240370204 240370204 C T FMN2 Missense_Mutation p.P698S 0.15 unknown(0) TCGA-MP-A4TH-01 20 3210840 3210840 C A SLC4A11 Silent p.T537T 0.18 TCGA-MP-A4TH-01 20 58349302 58349302 C T PHACTR3 Nonsense_Mutation p.Q311* 0.12 TCGA-MP-A4TH-01 20 58349430 58349430 A C PHACTR3 Silent p.R353R 0.14 TCGA-MP-A4TH-01 20 58349450 58349450 A G PHACTR3 Missense_Mutation p.E360G 0.17 deleterious(0) benign(0.194) TCGA-MP-A4TH-01 20 58349490 58349490 A C PHACTR3 Missense_Mutation p.K373N 0.19 tolerated(0.05) benign(0.075) TCGA-MP-A4TH-01 21 10862811 10862811 C A IGHV1OR21-1 Nonsense_Mutation p.S36* 0.05 TCGA-MP-A4TH-01 22 27012291 27012291 G A CRYBB1 5'UTR 0.17 TCGA-MP-A4TH-01 22 50719544 50719544 C T PLXNB2 Missense_Mutation p.R1246Q 0.25 deleterious(0) probably_damaging(0.997) TCGA-MP-A4TH-01 2 141115668 141115668 C A LRP1B Missense_Mutation p.A3759S 0.22 benign(0.002) TCGA-MP-A4TH-01 2 141130687 141130687 C A LRP1B Missense_Mutation p.C3553F 0.15 possibly_damaging(0.639) TCGA-MP-A4TH-01 2 14774226 14774226 G - FAM84A Frame_Shift_Del p.E42Kfs*14 0.22 TCGA-MP-A4TH-01 2 14775003 14775003 C T FAM84A 3'UTR 0.19 TCGA-MP-A4TH-01 2 168103015 168103015 C A XIRP2 Missense_Mutation p.R1705S 0.21 possibly_damaging(0.866) TCGA-MP-A4TH-01 2 176794625 176794625 C A KIAA1715 3'UTR 0.23 TCGA-MP-A4TH-01 2 179452702 179452702 C A TTN Missense_Mutation p.R21144S 0.22 TCGA-MP-A4TH-01 2 179572463 179572463 A T TTN Missense_Mutation p.C9611S 0.19 TCGA-MP-A4TH-01 2 190922057 190922057 T C MSTN Missense_Mutation p.Y352C 0.22 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TH-01 2 21228092 21228092 A T APOB Missense_Mutation p.L3883Q 0.20 probably_damaging(0.998) TCGA-MP-A4TH-01 2 220161532 220161532 C T PTPRN Missense_Mutation p.R750H 0.08 deleterious(0) probably_damaging(1) TCGA-MP-A4TH-01 2 228384687 228384687 A T AGFG1 Silent p.G95G 0.27 TCGA-MP-A4TH-01 2 88861822 88861822 C A EIF2AK3 Missense_Mutation p.Q1024H 0.10 deleterious(0.01) benign(0.043) TCGA-MP-A4TH-01 2 89512961 89512961 G - IGKV1-27 Frame_Shift_Del p.L100Cfs*? 0.11 TCGA-MP-A4TH-01 2 95847957 95847957 C G ZNF2 3'UTR 0.23 TCGA-MP-A4TH-01 3 126142390 126142390 C A CCDC37 Missense_Mutation p.L397M 0.12 tolerated(0.46) probably_damaging(0.946) TCGA-MP-A4TH-01 3 138724681 138724681 C A PRR23A Missense_Mutation p.A144S 0.23 deleterious(0.04) possibly_damaging(0.792) TCGA-MP-A4TH-01 3 142145685 142145685 T A XRN1 Splice_Site p.X103_splice 0.14 TCGA-MP-A4TH-01 3 194118596 194118596 T C GP5 Missense_Mutation p.Q139R 0.22 tolerated(0.1) benign(0.196) TCGA-MP-A4TH-01 3 37396632 37396632 A G GOLGA4 Missense_Mutation p.D2221G 0.12 probably_damaging(0.927) TCGA-MP-A4TH-01 3 49200405 49200405 T G CCDC71 Missense_Mutation p.K413Q 0.08 deleterious(0.02) unknown(0) TCGA-MP-A4TH-01 3 49200970 49200970 C A CCDC71 Silent p.R224R 0.20 TCGA-MP-A4TH-01 3 49881252 49881252 C A TRAIP Missense_Mutation p.M130I 0.17 tolerated(0.11) benign(0.254) TCGA-MP-A4TH-01 3 52366197 52366197 G C DNAH1 Missense_Mutation p.R358P 0.30 probably_damaging(0.998) TCGA-MP-A4TH-01 3 73433384 73433384 G C PDZRN3 Missense_Mutation p.S778C 0.17 deleterious(0.03) probably_damaging(0.993) TCGA-MP-A4TH-01 4 159627456 159627456 G C ETFDH Silent p.G467G 0.13 TCGA-MP-A4TH-01 4 187455142 187455142 C - MTNR1A Frame_Shift_Del p.A252Lfs*3 0.11 TCGA-MP-A4TH-01 4 38800295 38800295 G A TLR1 Missense_Mutation p.S53L 0.13 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TH-01 4 53325 53325 G T ZNF595 5'UTR 0.08 TCGA-MP-A4TH-01 5 110784900 110784900 C A CAMK4 Nonsense_Mutation p.C208* 0.12 TCGA-MP-A4TH-01 5 137206498 137206498 C A MYOT Missense_Mutation p.S53Y 0.27 deleterious(0.01) possibly_damaging(0.636) TCGA-MP-A4TH-01 5 137753202 137753202 C A KDM3B Missense_Mutation p.A1113D 0.08 deleterious(0.02) benign(0.119) TCGA-MP-A4TH-01 5 140788740 140788740 G A PCDHGB6 Missense_Mutation p.G324E 0.37 deleterious(0.03) possibly_damaging(0.905) TCGA-MP-A4TH-01 5 14390383 14390383 G T TRIO Missense_Mutation p.D1368Y 0.44 probably_damaging(0.999) TCGA-MP-A4TH-01 6 138196953 138196953 G T TNFAIP3 Missense_Mutation p.R205S 0.17 deleterious(0) probably_damaging(1) TCGA-MP-A4TH-01 6 30587514 30587514 C T MRPS18B Silent p.P72P 0.18 TCGA-MP-A4TH-01 6 39325070 39325070 T C KIF6 Silent p.Q721Q 0.15 TCGA-MP-A4TH-01 6 46190910 46190910 G T RCAN2 Missense_Mutation p.R234S 0.13 deleterious(0.01) probably_damaging(0.956) TCGA-MP-A4TH-01 6 46658186 46658186 T C TDRD6 Missense_Mutation p.V774A 0.13 deleterious(0.02) possibly_damaging(0.461) TCGA-MP-A4TH-01 6 47847175 47847175 T A PTCHD4 Missense_Mutation p.I469F 0.08 deleterious(0.01) benign(0.261) TCGA-MP-A4TH-01 6 54806408 54806408 G T FAM83B Missense_Mutation p.R880M 0.17 tolerated(0.09) benign(0.332) TCGA-MP-A4TH-01 6 54806409 54806409 G T FAM83B Missense_Mutation p.R880S 0.17 tolerated(0.91) benign(0.003) TCGA-MP-A4TH-01 6 75836172 75836172 G A COL12A1 Missense_Mutation p.P2119S 0.18 probably_damaging(1) TCGA-MP-A4TH-01 7 103294578 103294578 G T RELN Missense_Mutation p.H506N 0.12 tolerated(0.29) benign(0.204) TCGA-MP-A4TH-01 7 142131427 142131428 AG - TRBV5-6 Frame_Shift_Del p.A111Qfs*? 0.18 TCGA-MP-A4TH-01 7 148921513 148921513 C T ZNF282 Missense_Mutation p.T597M 0.15 deleterious(0) probably_damaging(0.911) TCGA-MP-A4TH-01 7 150068670 150068670 C G REPIN1 Missense_Mutation p.L171V 0.25 tolerated(0.17) benign(0.005) TCGA-MP-A4TH-01 7 88963465 88963465 T A ZNF804B Missense_Mutation p.L390Q 0.13 tolerated(0.83) benign(0.125) TCGA-MP-A4TH-01 8 116616914 116616914 C A TRPS1 Missense_Mutation p.V428L 0.17 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-MP-A4TH-01 8 2021432 2021432 A G MYOM2 Silent p.K324K 0.22 TCGA-MP-A4TH-01 8 37734704 37734704 A G RAB11FIP1 Missense_Mutation p.V246A 0.32 deleterious(0.02) probably_damaging(0.95) TCGA-MP-A4TH-01 8 39775455 39775455 T A IDO1 Missense_Mutation p.I50K 0.39 deleterious(0) probably_damaging(1) TCGA-MP-A4TH-01 8 54163498 54163498 C G OPRK1 Missense_Mutation p.A34P 0.29 tolerated(0.2) benign(0.001) TCGA-MP-A4TH-01 8 56436491 56436491 G A XKR4 Missense_Mutation p.R553H 0.30 tolerated(0.06) possibly_damaging(0.572) TCGA-MP-A4TH-01 9 128118030 128118030 G T GAPVD1 Nonsense_Mutation p.E1316* 0.21 TCGA-MP-A4TH-01 9 135116406 135116406 G A NTNG2 Silent p.T444T 0.25 TCGA-MP-A4TH-01 9 140055651 140055651 T A GRIN1 Splice_Site p.X468_splice 0.45 TCGA-MP-A4TH-01 9 33988990 33988990 G C UBAP2 Silent p.G141G 0.16 TCGA-MP-A4TH-01 9 99581808 99581808 T C ZNF782 Missense_Mutation p.N166S 0.16 tolerated(0.11) benign(0.004) TCGA-MP-A4TH-01 X 100401267 100401267 G C CENPI Splice_Site p.X609_splice 0.20 TCGA-MP-A4TH-01 X 10047839 10047839 G C WWC3 Silent p.L124L 0.10 TCGA-MP-A4TH-01 X 105189873 105189873 G T NRK Missense_Mutation p.D1358Y 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-MP-A4TH-01 X 107369381 107369381 G T ATG4A Missense_Mutation p.V29L 0.25 deleterious(0.03) benign(0.338) TCGA-MP-A4TH-01 X 119077245 119077245 G T NKAP Nonsense_Mutation p.Y108* 0.17 TCGA-MP-A4TH-01 X 120009352 120009352 A C CT47B1 Missense_Mutation p.V58G 0.18 tolerated(0.1) benign(0.399) TCGA-MP-A4TH-01 X 131540291 131540291 G T MBNL3 Missense_Mutation p.Q103K 0.19 deleterious(0.03) benign(0.442) TCGA-MP-A4TH-01 X 151283471 151283471 C A RP11-1007I13.4 RNA 0.11 TCGA-MP-A4TH-01 X 17744844 17744844 C A NHS Missense_Mutation p.P852Q 0.22 deleterious(0) probably_damaging(1) TCGA-MP-A4TH-01 X 34148040 34148040 C A FAM47A Nonsense_Mutation p.E786* 0.25 TCGA-MP-A4TH-01 X 41056749 41056749 G A USP9X Missense_Mutation p.A1456T 0.10 tolerated(0.31) probably_damaging(0.98) TCGA-MP-A4TH-01 X 48888919 48888919 C A TFE3 Missense_Mutation p.R426L 0.32 deleterious(0) benign(0) TCGA-MP-A4TH-01 X 53661217 53661217 C T HUWE1 Missense_Mutation p.A180T 0.17 probably_damaging(0.993) TCGA-MP-A4TH-01 X 54978500 54978500 C G PFKFB1 Missense_Mutation p.M228I 0.15 benign(0.001) TCGA-MP-A4TH-01 X 57620626 57620626 A G ZXDB Silent p.K715K 0.17 TCGA-MP-A4TH-01 X 70774360 70774360 T A OGT Intron 0.16 TCGA-MP-A4TH-01 X 77244929 77244929 C A ATP7A Missense_Mutation p.P271T 0.16 tolerated(0.31) benign(0.001) TCGA-MP-A4TH-01 X 86924403 86924403 C A KLHL4 3'UTR 0.19 TCGA-MP-A4TI-01 10 102048169 102048169 G A PKD2L1 Missense_Mutation p.T801M 0.08 tolerated_low_confidence(0.38) benign(0) TCGA-MP-A4TI-01 10 102056836 102056836 G A PKD2L1 Silent p.F362F 0.13 TCGA-MP-A4TI-01 10 11560554 11560554 G C USP6NL Missense_Mutation p.H76D 0.08 tolerated(0.08) benign(0.043) TCGA-MP-A4TI-01 10 118424322 118424322 G A C10orf82 Silent p.F137F 0.10 TCGA-MP-A4TI-01 10 18789789 18789789 G A CACNB2 Missense_Mutation p.E169K 0.05 deleterious(0.01) possibly_damaging(0.806) TCGA-MP-A4TI-01 10 20466293 20466293 C T PLXDC2 Missense_Mutation p.S339F 0.12 deleterious(0) possibly_damaging(0.812) TCGA-MP-A4TI-01 10 26581402 26581402 C A GAD2 Silent p.T465T 0.09 TCGA-MP-A4TI-01 10 28897232 28897232 C T WAC Missense_Mutation p.S346F 0.12 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-MP-A4TI-01 10 50902699 50902699 C A C10orf53 Intron 0.12 TCGA-MP-A4TI-01 10 70673214 70673214 G A DDX50 Silent p.Q275Q 0.07 TCGA-MP-A4TI-01 10 73464679 73464679 C G CDH23 Missense_Mutation p.I507M 0.12 tolerated(0.11) possibly_damaging(0.769) TCGA-MP-A4TI-01 10 75406633 75406633 G C SYNPO2L Nonsense_Mutation p.S926* 0.11 TCGA-MP-A4TI-01 11 108213995 108213995 G A ATM Missense_Mutation p.G2772E 0.10 deleterious(0.02) possibly_damaging(0.795) TCGA-MP-A4TI-01 11 116661139 116661139 C T APOA5 Missense_Mutation p.G269E 0.09 tolerated(0.28) benign(0.017) TCGA-MP-A4TI-01 11 118244398 118244398 C T UBE4A Nonsense_Mutation p.Q379* 0.18 TCGA-MP-A4TI-01 11 120673542 120673542 A T GRIK4 Missense_Mutation p.S75C 0.07 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TI-01 11 121058557 121058557 G C TECTA Missense_Mutation p.D2006H 0.22 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TI-01 11 1213404 1213404 C A MUC5AC RNA 0.05 TCGA-MP-A4TI-01 11 36250936 36250936 G A LDLRAD3 Missense_Mutation p.E343K 0.11 deleterious_low_confidence(0.01) benign(0.005) TCGA-MP-A4TI-01 11 40136720 40136720 A G LRRC4C Missense_Mutation p.C375R 0.09 deleterious(0) probably_damaging(1) TCGA-MP-A4TI-01 11 47296554 47296554 G T MADD Missense_Mutation p.R168L 0.11 deleterious(0.03) benign(0.033) TCGA-MP-A4TI-01 11 5221648 5221648 A C OR51V1 Missense_Mutation p.W95G 0.06 deleterious(0) probably_damaging(0.919) TCGA-MP-A4TI-01 11 5566631 5566631 G A OR52H1 Silent p.I41I 0.10 TCGA-MP-A4TI-01 11 55761299 55761299 A G OR5F1 Missense_Mutation p.L268P 0.12 tolerated(0.08) benign(0.033) TCGA-MP-A4TI-01 11 56000119 56000119 C T OR5T2 Missense_Mutation p.M181I 0.08 tolerated(0.19) benign(0.004) TCGA-MP-A4TI-01 11 56128020 56128020 C A OR8J1 Missense_Mutation p.Q100K 0.08 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TI-01 11 57099940 57099940 G C SSRP1 Missense_Mutation p.I263M 0.09 deleterious(0) probably_damaging(0.996) TCGA-MP-A4TI-01 11 58892467 58892467 A T FAM111B Silent p.I299I 0.08 TCGA-MP-A4TI-01 11 591441 591441 C G PHRF1 Missense_Mutation p.Q160E 0.14 tolerated(0.14) benign(0.022) TCGA-MP-A4TI-01 11 59420359 59420359 C A PATL1 Missense_Mutation p.M418I 0.12 deleterious(0.04) benign(0.011) TCGA-MP-A4TI-01 11 62489591 62489591 C T HNRNPUL2 Missense_Mutation p.E453K 0.13 deleterious(0) benign(0.182) TCGA-MP-A4TI-01 11 63057853 63057853 C G SLC22A10 Silent p.L72L 0.08 TCGA-MP-A4TI-01 11 64434870 64434870 C A NRXN2 Silent p.R550R 0.11 TCGA-MP-A4TI-01 11 6646661 6646661 G C DCHS1 Nonsense_Mutation p.S2305* 0.13 TCGA-MP-A4TI-01 11 67203497 67203497 C A PTPRCAP Nonsense_Mutation p.E110* 0.16 TCGA-MP-A4TI-01 11 67795528 67795528 C G ALDH3B1 3'UTR 0.11 TCGA-MP-A4TI-01 11 7981820 7981820 G C NLRP10 Missense_Mutation p.L447V 0.06 tolerated(0.05) possibly_damaging(0.46) TCGA-MP-A4TI-01 11 92624330 92624330 G C FAT3 3'UTR 0.17 TCGA-MP-A4TI-01 12 100042150 100042150 C A FAM71C Silent p.A66A 0.08 TCGA-MP-A4TI-01 12 100732542 100732542 C T SCYL2 Silent p.F794F 0.08 TCGA-MP-A4TI-01 12 102025811 102025811 G A MYBPC1 Missense_Mutation p.E126K 0.08 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TI-01 12 10374538 10374538 C A GABARAPL1 3'UTR 0.12 TCGA-MP-A4TI-01 12 10962016 10962016 C G TAS2R9 Missense_Mutation p.R220T 0.06 deleterious(0) probably_damaging(0.995) TCGA-MP-A4TI-01 12 113722426 113722426 G A TPCN1 Silent p.E533E 0.08 TCGA-MP-A4TI-01 12 120741615 120741615 G A SIRT4 Missense_Mutation p.R84H 0.06 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TI-01 12 120995422 120995422 G A RNF10 Missense_Mutation p.G302R 0.11 deleterious(0) probably_damaging(0.953) TCGA-MP-A4TI-01 12 123687289 123687289 C G MPHOSPH9 Missense_Mutation p.E403Q 0.11 deleterious(0.01) possibly_damaging(0.885) TCGA-MP-A4TI-01 12 133306800 133306800 C A ANKLE2 Nonsense_Mutation p.E650* 0.09 TCGA-MP-A4TI-01 12 14018857 14018857 C T GRIN2B Missense_Mutation p.G96R 0.09 deleterious(0) probably_damaging(1) TCGA-MP-A4TI-01 12 22208502 22208502 G A CMAS Missense_Mutation p.V173M 0.12 deleterious(0) possibly_damaging(0.747) TCGA-MP-A4TI-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.12 deleterious(0.04) probably_damaging(0.993) TCGA-MP-A4TI-01 12 32138114 32138114 G A KIAA1551 Missense_Mutation p.D1409N 0.07 tolerated(1) benign(0) TCGA-MP-A4TI-01 12 32907006 32907006 C G YARS2 Missense_Mutation p.D265H 0.10 deleterious(0.02) possibly_damaging(0.697) TCGA-MP-A4TI-01 12 32908175 32908175 C T YARS2 Missense_Mutation p.E212K 0.08 tolerated(0.1) benign(0.013) TCGA-MP-A4TI-01 12 44913794 44913794 C A NELL2 Missense_Mutation p.Q848H 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-MP-A4TI-01 12 49485105 49485105 C T DHH Missense_Mutation p.R124Q 0.09 deleterious(0) probably_damaging(1) TCGA-MP-A4TI-01 12 49994192 49994192 C G FAM186B Missense_Mutation p.E411Q 0.10 tolerated(0.07) possibly_damaging(0.502) TCGA-MP-A4TI-01 12 50187189 50187189 C T NCKAP5L Missense_Mutation p.E1096K 0.18 tolerated(0.34) benign(0.281) TCGA-MP-A4TI-01 12 54686353 54686353 G A NFE2 Silent p.L309L 0.07 TCGA-MP-A4TI-01 12 56082728 56082728 C T ITGA7 Missense_Mutation p.G957D 0.17 deleterious(0.01) possibly_damaging(0.844) TCGA-MP-A4TI-01 12 58014071 58014071 G T SLC26A10 Missense_Mutation p.R23M 0.08 tolerated_low_confidence(0.09) benign(0.016) TCGA-MP-A4TI-01 12 59282683 59282683 G A LRIG3 Silent p.L241L 0.11 TCGA-MP-A4TI-01 12 7045212 7045212 C G ATN1 Nonsense_Mutation p.S261* 0.10 TCGA-MP-A4TI-01 12 78593302 78593302 G A NAV3 Missense_Mutation p.V2214I 0.14 deleterious(0.03) probably_damaging(0.997) TCGA-MP-A4TI-01 12 80749652 80749652 G C OTOGL Silent p.T1901T 0.16 TCGA-MP-A4TI-01 12 88388419 88388419 C G C12orf50 Missense_Mutation p.E195Q 0.08 deleterious(0.01) probably_damaging(0.962) TCGA-MP-A4TI-01 12 993991 993991 A C WNK1 Missense_Mutation p.S1341R 0.10 deleterious(0) possibly_damaging(0.449) TCGA-MP-A4TI-01 13 113333785 113333785 C G C13orf35 Missense_Mutation p.S31C 0.11 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-MP-A4TI-01 13 50062753 50062753 G T SETDB2 Missense_Mutation p.G647V 0.10 deleterious(0) probably_damaging(1) TCGA-MP-A4TI-01 13 53603017 53603017 G T OLFM4 Missense_Mutation p.G16C 0.06 deleterious_low_confidence(0.01) unknown(0) TCGA-MP-A4TI-01 13 60240977 60240977 T C DIAPH3 Missense_Mutation p.N1108S 0.09 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-MP-A4TI-01 13 96505887 96505887 C G UGGT2 Missense_Mutation p.K1398N 0.10 deleterious(0) probably_damaging(0.958) TCGA-MP-A4TI-01 14 102825812 102825812 G A CINP Silent p.L55L 0.11 TCGA-MP-A4TI-01 14 20692728 20692728 G T OR11H6 Missense_Mutation p.G287V 0.10 deleterious(0.03) benign(0.055) TCGA-MP-A4TI-01 14 33292194 33292194 A T AKAP6 Silent p.S1725S 0.10 TCGA-MP-A4TI-01 14 35592775 35592775 G A KIAA0391 Silent p.V108V 0.09 TCGA-MP-A4TI-01 14 44973709 44973709 C A FSCB 3'UTR 0.12 TCGA-MP-A4TI-01 14 61113211 61113211 G A SIX1 Silent p.S215S 0.12 TCGA-MP-A4TI-01 14 75248679 75248679 C T YLPM1 Nonsense_Mutation p.Q645* 0.13 TCGA-MP-A4TI-01 14 77935506 77935506 G C AHSA1 Missense_Mutation p.E311Q 0.09 tolerated(0.07) possibly_damaging(0.576) TCGA-MP-A4TI-01 14 81952072 81952072 C G SEL1L Missense_Mutation p.G606A 0.09 tolerated(0.7) benign(0.007) TCGA-MP-A4TI-01 14 92472313 92472313 C G TRIP11 Missense_Mutation p.K669N 0.12 tolerated(0.4) benign(0.011) TCGA-MP-A4TI-01 14 93412782 93412782 G A ITPK1 Silent p.L265L 0.07 TCGA-MP-A4TI-01 14 94088015 94088015 G T UNC79 Missense_Mutation p.S1302I 0.10 deleterious_low_confidence(0) benign(0.429) TCGA-MP-A4TI-01 14 94700010 94700010 C T PPP4R4 Silent p.S179S 0.12 TCGA-MP-A4TI-01 15 28117044 28117044 C A OCA2 Nonsense_Mutation p.E702* 0.08 TCGA-MP-A4TI-01 15 56208063 56208063 C A NEDD4 Missense_Mutation p.V323F 0.09 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-MP-A4TI-01 16 1498464 1498464 C G CLCN7 Silent p.V635V 0.20 TCGA-MP-A4TI-01 16 18878081 18878081 A C SMG1 Missense_Mutation p.V1071G 0.10 tolerated(0.4) probably_damaging(0.915) TCGA-MP-A4TI-01 16 2030133 2030133 C A NOXO1 Missense_Mutation p.G156C 0.25 tolerated(0.08) possibly_damaging(0.711) TCGA-MP-A4TI-01 16 29937290 29937290 G C KCTD13 Missense_Mutation p.S22W 0.18 deleterious_low_confidence(0) benign(0.033) TCGA-MP-A4TI-01 16 3117519 3117519 C T IL32 Intron 0.08 TCGA-MP-A4TI-01 16 31200443 31200443 G A FUS Splice_Site p.X278_splice 0.11 TCGA-MP-A4TI-01 16 3142060 3142060 C T ZSCAN10 Silent p.L163L 0.10 TCGA-MP-A4TI-01 16 57789824 57789824 G A KATNB1 Silent p.Q546Q 0.07 TCGA-MP-A4TI-01 16 58752180 58752180 G A GOT2 Missense_Mutation p.L208F 0.09 deleterious(0) probably_damaging(0.969) TCGA-MP-A4TI-01 16 66998347 66998347 C T CES3 Silent p.F216F 0.10 TCGA-MP-A4TI-01 16 69725833 69725833 C T NFAT5 Missense_Mutation p.S702L 0.13 benign(0.11) TCGA-MP-A4TI-01 16 7760716 7760716 G T RBFOX1 Missense_Mutation p.R409L 0.06 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TI-01 17 34236274 34236274 G T AC015849.16 RNA 0.07 TCGA-MP-A4TI-01 17 37331332 37331332 T C CACNB1 3'UTR 0.12 TCGA-MP-A4TI-01 17 37343069 37343069 C T CACNB1 Silent p.L176L 0.06 TCGA-MP-A4TI-01 17 39190711 39190711 G A KRTAP1-3 Silent p.P121P 0.12 TCGA-MP-A4TI-01 17 54535256 54535256 G A ANKFN1 Silent p.L494L 0.06 TCGA-MP-A4TI-01 17 62968902 62968902 C T AMZ2P1 RNA 0.17 TCGA-MP-A4TI-01 17 65890174 65890174 G C BPTF Missense_Mutation p.Q812H 0.14 possibly_damaging(0.805) TCGA-MP-A4TI-01 17 65971937 65971937 G A BPTF Silent p.L2863L 0.09 TCGA-MP-A4TI-01 17 67178412 67178412 G T ABCA10 Missense_Mutation p.A884E 0.18 deleterious(0.03) probably_damaging(0.979) TCGA-MP-A4TI-01 17 72537648 72537648 C A CD300C 3'UTR 0.19 TCGA-MP-A4TI-01 17 7578448 7578448 G T TP53 Missense_Mutation p.A161D 0.12 deleterious(0) probably_damaging(1) TCGA-MP-A4TI-01 17 7579525 7579525 G A TP53 Silent p.F54F 0.08 TCGA-MP-A4TI-01 18 120840 120840 G C ROCK1P1 RNA 0.27 TCGA-MP-A4TI-01 18 21914232 21914232 T C OSBPL1A Missense_Mutation p.K153E 0.09 tolerated(0.39) benign(0) TCGA-MP-A4TI-01 18 30847250 30847250 C G CCDC178 Missense_Mutation p.L396F 0.14 deleterious(0.04) probably_damaging(0.982) TCGA-MP-A4TI-01 18 31803023 31803023 G T NOL4 Silent p.G65G 0.08 TCGA-MP-A4TI-01 18 48331593 48331593 C A MRO Missense_Mutation p.K134N 0.15 tolerated(0.13) benign(0.137) TCGA-MP-A4TI-01 18 54448787 54448787 G T WDR7 Silent p.L1030L 0.11 TCGA-MP-A4TI-01 18 54448788 54448788 C T WDR7 Missense_Mutation p.L1031F 0.11 deleterious(0) possibly_damaging(0.888) TCGA-MP-A4TI-01 19 10610212 10610212 G A KEAP1 Silent p.S166S 0.19 TCGA-MP-A4TI-01 19 1106545 1106545 G A GPX4 Missense_Mutation p.E190K 0.13 tolerated(0.1) benign(0.136) TCGA-MP-A4TI-01 19 12184963 12184963 G A ZNF844 Missense_Mutation p.A41T 0.10 tolerated(0.21) probably_damaging(0.945) TCGA-MP-A4TI-01 19 37117246 37117246 A T ZNF382 Silent p.L149L 0.07 TCGA-MP-A4TI-01 19 40877597 40877597 G A PLD3 Silent p.V232V 0.21 TCGA-MP-A4TI-01 19 42912158 42912158 G C LIPE Missense_Mutation p.F542L 0.12 deleterious(0) probably_damaging(0.98) TCGA-MP-A4TI-01 19 43709720 43709720 G T PSG4 5'UTR 0.13 TCGA-MP-A4TI-01 19 4432137 4432137 G A CHAF1A Silent p.L712L 0.07 TCGA-MP-A4TI-01 19 44932687 44932687 C A ZNF229 Missense_Mutation p.G757C 0.07 tolerated(0.07) probably_damaging(0.987) TCGA-MP-A4TI-01 19 51274166 51274166 C T GPR32 Silent p.V103V 0.08 TCGA-MP-A4TI-01 19 52955006 52955006 G A ZNF578 5'Flank 0.14 TCGA-MP-A4TI-01 19 53056424 53056424 C G ZNF808 Missense_Mutation p.I85M 0.09 deleterious(0.03) benign(0.131) TCGA-MP-A4TI-01 19 54659091 54659091 G A CNOT3 Silent p.K736K 0.12 TCGA-MP-A4TI-01 19 54848314 54848314 G A LILRA4 Silent p.F351F 0.09 TCGA-MP-A4TI-01 19 57325607 57325607 A C PEG3 Silent p.A1401A 0.12 TCGA-MP-A4TI-01 19 58320115 58320115 C T ZNF552 Missense_Mutation p.E173K 0.09 tolerated(0.17) benign(0.031) TCGA-MP-A4TI-01 19 59010976 59010976 C T SLC27A5 Missense_Mutation p.R517Q 0.07 deleterious(0.02) benign(0.131) TCGA-MP-A4TI-01 19 9075313 9075313 T A MUC16 Nonsense_Mutation p.K4045* 0.04 TCGA-MP-A4TI-01 1 107691165 107691165 C T NTNG1 5'UTR 0.18 TCGA-MP-A4TI-01 1 145747081 145747081 C T PDZK1 Missense_Mutation p.S13F 0.07 deleterious(0) probably_damaging(0.96) TCGA-MP-A4TI-01 1 145747191 145747191 C T PDZK1 Nonsense_Mutation p.Q50* 0.09 TCGA-MP-A4TI-01 1 152277854 152277854 G T FLG Missense_Mutation p.Q3170K 0.11 unknown(0) TCGA-MP-A4TI-01 1 153661496 153661496 G T NPR1 Nonsense_Mutation p.E829* 0.08 TCGA-MP-A4TI-01 1 155348115 155348115 C T ASH1L Missense_Mutation p.D2097N 0.14 tolerated_low_confidence(0.09) benign(0.005) TCGA-MP-A4TI-01 1 157497440 157497440 G T FCRL5 Missense_Mutation p.Q643K 0.10 tolerated(0.13) benign(0.102) TCGA-MP-A4TI-01 1 158612333 158612333 C A SPTA1 Splice_Site p.X1536_splice 0.17 TCGA-MP-A4TI-01 1 159283787 159283787 G A OR10J3 Silent p.L221L 0.06 TCGA-MP-A4TI-01 1 159863061 159863061 G C CCDC19 Missense_Mutation p.S13C 0.04 deleterious(0.01) possibly_damaging(0.863) TCGA-MP-A4TI-01 1 161018419 161018419 C T ARHGAP30 Missense_Mutation p.E798K 0.06 deleterious_low_confidence(0.02) benign(0.014) TCGA-MP-A4TI-01 1 162257211 162257211 G A NOS1AP Silent p.L85L 0.10 TCGA-MP-A4TI-01 1 16272689 16272689 G A ZBTB17 Silent p.L165L 0.17 TCGA-MP-A4TI-01 1 173703376 173703376 G T KLHL20 Missense_Mutation p.R183L 0.09 tolerated(0.28) benign(0.132) TCGA-MP-A4TI-01 1 178489553 178489553 C T TEX35 Missense_Mutation p.T108I 0.17 tolerated(1) probably_damaging(0.986) TCGA-MP-A4TI-01 1 17914910 17914910 G A ARHGEF10L Intron 0.12 TCGA-MP-A4TI-01 1 183079706 183079706 G A LAMC1 Missense_Mutation p.G313E 0.05 deleterious(0) probably_damaging(1) TCGA-MP-A4TI-01 1 200967536 200967536 G T KIF21B Missense_Mutation p.R685S 0.16 deleterious(0) probably_damaging(0.991) TCGA-MP-A4TI-01 1 205238836 205238836 G A TMCC2 Silent p.G502G 0.13 TCGA-MP-A4TI-01 1 208062964 208062964 C T CD34 Silent p.A200A 0.12 TCGA-MP-A4TI-01 1 21268606 21268606 T A EIF4G3 Silent p.P297P 0.13 TCGA-MP-A4TI-01 1 215408400 215408400 C A KCNK2 Missense_Mutation p.P398H 0.15 deleterious_low_confidence(0) possibly_damaging(0.491) TCGA-MP-A4TI-01 1 215408401 215408401 C A KCNK2 Silent p.P398P 0.13 TCGA-MP-A4TI-01 1 223177851 223177851 G C DISP1 Missense_Mutation p.E1038Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TI-01 1 223284749 223284749 G A TLR5 Missense_Mutation p.S542F 0.11 tolerated(0.12) benign(0.018) TCGA-MP-A4TI-01 1 229440968 229440968 A C SPHAR Missense_Mutation p.K29N 0.17 tolerated_low_confidence(0.15) possibly_damaging(0.607) TCGA-MP-A4TI-01 1 233190170 233190170 C T PCNXL2 Missense_Mutation p.E1399K 0.08 tolerated(0.07) benign(0.011) TCGA-MP-A4TI-01 1 23688594 23688594 G A ZNF436 Silent p.F427F 0.12 TCGA-MP-A4TI-01 1 242052912 242052912 G T EXO1 3'UTR 0.12 TCGA-MP-A4TI-01 1 247902012 247902012 C A OR14K1 Silent p.I32I 0.11 TCGA-MP-A4TI-01 1 25628093 25628093 C G RHD Missense_Mutation p.F239L 0.25 tolerated(0.31) benign(0.107) TCGA-MP-A4TI-01 1 27099437 27099437 C G ARID1A Missense_Mutation p.S1225C 0.09 unknown(0) TCGA-MP-A4TI-01 1 39750797 39750797 C T MACF1 Missense_Mutation p.H397Y 0.09 possibly_damaging(0.854) TCGA-MP-A4TI-01 1 39927593 39927593 G A MACF1 Missense_Mutation p.D5129N 0.08 probably_damaging(0.967) TCGA-MP-A4TI-01 1 40313265 40313265 C T TRIT1 Missense_Mutation p.E295K 0.05 tolerated(0.08) benign(0.285) TCGA-MP-A4TI-01 1 41979191 41979191 G A HIVEP3 Nonsense_Mutation p.Q1901* 0.09 TCGA-MP-A4TI-01 1 43905556 43905556 G C SZT2 Missense_Mutation p.Q2292H 0.12 tolerated(0.17) benign(0.001) TCGA-MP-A4TI-01 1 46740345 46740345 C A RAD54L Silent p.R609R 0.08 TCGA-MP-A4TI-01 1 54661256 54661256 C T CYB5RL Missense_Mutation p.E12K 0.11 tolerated(0.1) benign(0.292) TCGA-MP-A4TI-01 1 55063027 55063027 G T ACOT11 Missense_Mutation p.G235C 0.08 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TI-01 1 75672358 75672358 G A SLC44A5 Silent p.F698F 0.06 TCGA-MP-A4TI-01 20 13756665 13756665 C A ESF1 Missense_Mutation p.D297Y 0.13 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TI-01 20 25261030 25261030 C G PYGB Missense_Mutation p.I407M 0.12 deleterious(0) probably_damaging(0.982) TCGA-MP-A4TI-01 20 25507217 25507217 C T NINL Missense_Mutation p.E3K 0.16 deleterious(0) possibly_damaging(0.83) TCGA-MP-A4TI-01 20 36627655 36627655 C A TTI1 Missense_Mutation p.A910S 0.11 tolerated(0.08) benign(0.008) TCGA-MP-A4TI-01 20 44698888 44698888 C G NCOA5 Missense_Mutation p.R109T 0.10 deleterious(0) unknown(0) TCGA-MP-A4TI-01 20 45985432 45985432 G C ZMYND8 5'Flank 0.08 TCGA-MP-A4TI-01 20 54824859 54824859 G T MC3R Missense_Mutation p.M320I 0.05 tolerated(0.24) benign(0.003) TCGA-MP-A4TI-01 20 61513083 61513083 C T DIDO1 Missense_Mutation p.E1409K 0.05 benign(0.114) TCGA-MP-A4TI-01 21 31311760 31311760 G T GRIK1 Missense_Mutation p.A20E 0.21 tolerated_low_confidence(0.53) benign(0.009) TCGA-MP-A4TI-01 22 18653645 18653645 G T USP18 Missense_Mutation p.Q283H 0.07 deleterious(0.03) probably_damaging(0.928) TCGA-MP-A4TI-01 22 19376021 19376021 G C HIRA Missense_Mutation p.I331M 0.06 deleterious(0) probably_damaging(0.959) TCGA-MP-A4TI-01 22 24982373 24982373 C T FAM211B Silent p.K143K 0.05 TCGA-MP-A4TI-01 22 30740979 30740979 G C SF3A1 Silent p.L198L 0.11 TCGA-MP-A4TI-01 22 37271902 37271902 C T NCF4 Missense_Mutation p.H279Y 0.09 deleterious_low_confidence(0) benign(0.152) TCGA-MP-A4TI-01 22 37332659 37332659 G A CSF2RB Silent p.Q511Q 0.17 TCGA-MP-A4TI-01 22 37603254 37603254 C G SSTR3 Missense_Mutation p.E197Q 0.42 tolerated(0.1) benign(0.306) TCGA-MP-A4TI-01 22 42807442 42807442 C T NFAM1 Missense_Mutation p.R141K 0.13 tolerated(1) benign(0.004) TCGA-MP-A4TI-01 22 45996261 45996261 G A FBLN1 Missense_Mutation p.G683R 0.18 tolerated(0.29) probably_damaging(0.98) TCGA-MP-A4TI-01 22 50728917 50728917 C A PLXNB2 Nonsense_Mutation p.E33* 0.28 TCGA-MP-A4TI-01 2 101654041 101654041 C G TBC1D8 Missense_Mutation p.V454L 0.09 tolerated(0.57) benign(0) TCGA-MP-A4TI-01 2 103090339 103090339 G T SLC9A4 Missense_Mutation p.A41S 0.07 tolerated(0.68) benign(0.001) TCGA-MP-A4TI-01 2 141680707 141680707 G A LRP1B Missense_Mutation p.S1049F 0.06 possibly_damaging(0.828) TCGA-MP-A4TI-01 2 141771218 141771218 G A LRP1B Nonsense_Mutation p.Q763* 0.08 TCGA-MP-A4TI-01 2 1488400 1488400 C A TPO Silent p.I457I 0.13 TCGA-MP-A4TI-01 2 155711600 155711600 C A KCNJ3 Silent p.A427A 0.11 TCGA-MP-A4TI-01 2 165986770 165986770 G T SCN3A Missense_Mutation p.L868I 0.08 deleterious(0) probably_damaging(0.968) TCGA-MP-A4TI-01 2 168101002 168101002 C T XIRP2 Missense_Mutation p.H1034Y 0.11 possibly_damaging(0.848) TCGA-MP-A4TI-01 2 186671048 186671048 C T FSIP2 Missense_Mutation p.S5761L 0.09 benign(0.01) TCGA-MP-A4TI-01 2 189875046 189875046 G A COL3A1 Silent p.E1322E 0.08 TCGA-MP-A4TI-01 2 189875404 189875404 G A COL3A1 Missense_Mutation p.D1348N 0.10 unknown(0) TCGA-MP-A4TI-01 2 200137314 200137314 C T SATB2 Missense_Mutation p.E608K 0.11 tolerated(0.08) benign(0.101) TCGA-MP-A4TI-01 2 207454132 207454132 G C ADAM23 Splice_Site p.X618_splice 0.19 TCGA-MP-A4TI-01 2 27597003 27597003 C T SNX17 Silent p.L162L 0.08 TCGA-MP-A4TI-01 2 29551276 29551276 C A ALK Missense_Mutation p.G452W 0.10 deleterious(0.05) probably_damaging(1) TCGA-MP-A4TI-01 2 37520348 37520348 C G PRKD3 Missense_Mutation p.E119Q 0.14 tolerated(0.38) benign(0.017) TCGA-MP-A4TI-01 2 43937394 43937394 G T PLEKHH2 Missense_Mutation p.M713I 0.08 deleterious(0.02) benign(0.155) TCGA-MP-A4TI-01 2 48049410 48049410 C G FBXO11 Missense_Mutation p.G550A 0.10 deleterious(0.03) probably_damaging(1) TCGA-MP-A4TI-01 2 49195911 49195911 C T FSHR Silent p.K260K 0.10 TCGA-MP-A4TI-01 2 50149325 50149325 G T NRXN1 Silent p.S1467S 0.06 TCGA-MP-A4TI-01 2 50149326 50149326 G T NRXN1 Missense_Mutation p.S1467Y 0.06 deleterious(0) probably_damaging(0.992) TCGA-MP-A4TI-01 2 65473820 65473820 T G ACTR2 Missense_Mutation p.L113V 0.10 deleterious(0.02) benign(0.045) TCGA-MP-A4TI-01 2 68615558 68615558 G T PLEK Missense_Mutation p.D233Y 0.08 deleterious(0.01) possibly_damaging(0.702) TCGA-MP-A4TI-01 2 68882250 68882250 G T PROKR1 Missense_Mutation p.V242L 0.05 tolerated(0.53) benign(0.013) TCGA-MP-A4TI-01 2 71012592 71012592 G T FIGLA Missense_Mutation p.H188Q 0.10 tolerated(1) benign(0) TCGA-MP-A4TI-01 2 71742830 71742830 G A DYSF Silent p.G279G 0.09 TCGA-MP-A4TI-01 2 73476214 73476214 C A CCT7 Silent p.L293L 0.12 TCGA-MP-A4TI-01 2 73679645 73679645 G C ALMS1 Missense_Mutation p.K1996N 0.13 possibly_damaging(0.52) TCGA-MP-A4TI-01 2 76975855 76975855 G T LRRTM4 Missense_Mutation p.A580E 0.07 tolerated_low_confidence(0.13) benign(0.284) TCGA-MP-A4TI-01 2 85766470 85766470 C T MAT2A Silent p.F20F 0.13 TCGA-MP-A4TI-01 2 86386710 86386710 T C IMMT Silent p.A327A 0.10 TCGA-MP-A4TI-01 2 89156898 89156898 C T IGKC Silent p.K100K 0.11 TCGA-MP-A4TI-01 2 90193302 90193302 G A IGKV1D-13 Missense_Mutation p.E77K 0.10 tolerated(0.17) benign(0.005) TCGA-MP-A4TI-01 3 118870145 118870145 G C C3orf30 3'UTR 0.11 TCGA-MP-A4TI-01 3 120315260 120315260 C T NDUFB4 Silent p.L18L 0.13 TCGA-MP-A4TI-01 3 124157861 124157861 G A KALRN Missense_Mutation p.E1057K 0.13 deleterious(0.03) possibly_damaging(0.58) TCGA-MP-A4TI-01 3 133098753 133098753 G C TMEM108 Silent p.L66L 0.09 TCGA-MP-A4TI-01 3 178927405 178927405 G A PIK3CA Missense_Mutation p.D390N 0.09 tolerated(0.08) probably_damaging(0.975) TCGA-MP-A4TI-01 3 45677727 45677727 C T LIMD1 Silent p.F498F 0.05 TCGA-MP-A4TI-01 3 49153902 49153902 G A USP19 Missense_Mutation p.T422M 0.05 deleterious(0.01) probably_damaging(1) TCGA-MP-A4TI-01 3 51457258 51457258 G A VPRBP Missense_Mutation p.R627C 0.05 deleterious(0.03) benign(0.043) TCGA-MP-A4TI-01 3 52538856 52538856 C T STAB1 Silent p.A447A 0.07 TCGA-MP-A4TI-01 4 103534677 103534677 G A NFKB1 Silent p.V896V 0.13 TCGA-MP-A4TI-01 4 114823913 114823913 C G ARSJ Silent p.G439G 0.22 TCGA-MP-A4TI-01 4 119644688 119644688 G C SEC24D Missense_Mutation p.I1027M 0.13 deleterious(0) possibly_damaging(0.823) TCGA-MP-A4TI-01 4 128949783 128949783 A G C4orf29 Missense_Mutation p.K285E 0.08 tolerated(0.51) benign(0.005) TCGA-MP-A4TI-01 4 155309 155309 T C ZNF718 RNA 0.18 TCGA-MP-A4TI-01 4 156136118 156136118 G A NPY2R Missense_Mutation p.E343K 0.07 tolerated(0.52) benign(0.005) TCGA-MP-A4TI-01 4 164271557 164271557 G T NPY5R Silent p.L44L 0.14 TCGA-MP-A4TI-01 4 169060648 169060648 G A ANXA10 Missense_Mutation p.D38N 0.09 tolerated(0.08) probably_damaging(0.938) TCGA-MP-A4TI-01 4 187130345 187130345 G A CYP4V2 Missense_Mutation p.E442K 0.08 deleterious(0.05) probably_damaging(0.983) TCGA-MP-A4TI-01 4 2698293 2698293 G A FAM193A Silent p.A869A 0.10 TCGA-MP-A4TI-01 4 2877750 2877750 G A ADD1 Silent p.L36L 0.20 TCGA-MP-A4TI-01 4 40337874 40337874 A T CHRNA9 Missense_Mutation p.Q32L 0.13 deleterious(0.03) benign(0.201) TCGA-MP-A4TI-01 4 74361118 74361118 C A AFM Missense_Mutation p.T387K 0.11 tolerated(0.2) benign(0.124) TCGA-MP-A4TI-01 4 8602885 8602885 G A CPZ Missense_Mutation p.D53N 0.15 deleterious(0) probably_damaging(0.986) TCGA-MP-A4TI-01 4 89425423 89425423 G C HERC5 Missense_Mutation p.D875H 0.11 deleterious(0) possibly_damaging(0.89) TCGA-MP-A4TI-01 4 898542 898542 T G GAK Missense_Mutation p.K136N 0.23 tolerated(0.13) benign(0.333) TCGA-MP-A4TI-01 5 137756418 137756418 C T KDM3B Missense_Mutation p.L1247F 0.10 tolerated(0.06) benign(0.058) TCGA-MP-A4TI-01 5 140735098 140735098 G C PCDHGA4 Missense_Mutation p.E111Q 0.11 deleterious_low_confidence(0.01) probably_damaging(0.913) TCGA-MP-A4TI-01 5 140741832 140741832 A T PCDHGB2 Silent p.A710A 0.05 TCGA-MP-A4TI-01 5 141243883 141243883 C G PCDH1 Silent p.L671L 0.09 TCGA-MP-A4TI-01 5 149360119 149360119 C T SLC26A2 Silent p.L321L 0.12 TCGA-MP-A4TI-01 5 154185581 154185581 G A LARP1 Missense_Mutation p.R819H 0.07 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TI-01 5 156915349 156915349 A C ADAM19 Missense_Mutation p.I825R 0.07 tolerated(0.18) benign(0.128) TCGA-MP-A4TI-01 5 161113949 161113949 C A GABRA6 Silent p.V55V 0.17 TCGA-MP-A4TI-01 5 178503489 178503489 A T ZNF354C Missense_Mutation p.D24V 0.14 deleterious(0) possibly_damaging(0.867) TCGA-MP-A4TI-01 5 311475 311475 G A PDCD6 Silent p.Q145Q 0.14 TCGA-MP-A4TI-01 5 36253826 36253826 G A RANBP3L Nonsense_Mutation p.Q389* 0.08 TCGA-MP-A4TI-01 5 38953591 38953591 T A RICTOR Missense_Mutation p.K921I 0.21 tolerated(0.26) possibly_damaging(0.845) TCGA-MP-A4TI-01 5 43040006 43040006 G A ANXA2R Missense_Mutation p.S48L 0.10 tolerated(0.08) probably_damaging(0.948) TCGA-MP-A4TI-01 5 56177500 56177500 A G MAP3K1 Missense_Mutation p.R825G 0.14 deleterious(0) possibly_damaging(0.791) TCGA-MP-A4TI-01 5 637772 637772 G A CEP72 Missense_Mutation p.E349K 0.12 tolerated(0.43) benign(0.006) TCGA-MP-A4TI-01 5 74109763 74109763 C A FAM169A Missense_Mutation p.G191V 0.13 deleterious(0) probably_damaging(0.994) TCGA-MP-A4TI-01 6 130762039 130762039 A G TMEM200A Missense_Mutation p.I158V 0.14 deleterious(0) probably_damaging(0.994) TCGA-MP-A4TI-01 6 131191138 131191138 A G EPB41L2 Silent p.R724R 0.15 TCGA-MP-A4TI-01 6 160908334 160908334 C T LPAL2 Intron 0.13 TCGA-MP-A4TI-01 6 26217250 26217250 A G HIST1H2AE Silent p.K16K 0.07 TCGA-MP-A4TI-01 6 31170488 31170488 C A HCG27 Missense_Mutation p.P155Q 0.11 deleterious_low_confidence(0) unknown(0) TCGA-MP-A4TI-01 6 54208044 54208044 T C TINAG Silent p.T215T 0.24 TCGA-MP-A4TI-01 6 74229648 74229648 G C EEF1A1 Missense_Mutation p.I34M 0.11 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-MP-A4TI-01 6 83732233 83732233 G C UBE3D Missense_Mutation p.S262C 0.16 deleterious(0) benign(0.248) TCGA-MP-A4TI-01 7 100350277 100350277 C A ZAN Missense_Mutation p.P850H 0.05 unknown(0) TCGA-MP-A4TI-01 7 102962386 102962386 G A DNAJC2 Missense_Mutation p.S359L 0.08 tolerated(0.7) benign(0.021) TCGA-MP-A4TI-01 7 119915274 119915274 C A KCND2 Silent p.A196A 0.10 TCGA-MP-A4TI-01 7 121651958 121651958 C T PTPRZ1 Missense_Mutation p.S953F 0.06 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-MP-A4TI-01 7 129944317 129944317 G A CPA4 Splice_Site p.X129_splice 0.06 TCGA-MP-A4TI-01 7 142162361 142162361 C T TRBV6-6 Translation_Start_Site p.M1? 0.09 deleterious(0) possibly_damaging(0.657) TCGA-MP-A4TI-01 7 149506172 149506172 C A SSPO RNA 0.17 TCGA-MP-A4TI-01 7 150721185 150721185 G C ATG9B Missense_Mutation p.S109C 0.14 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-MP-A4TI-01 7 44157328 44157328 G C POLD2 Missense_Mutation p.P119R 0.09 deleterious(0) possibly_damaging(0.743) TCGA-MP-A4TI-01 7 97857328 97857328 G A TECPR1 Silent p.S837S 0.15 TCGA-MP-A4TI-01 7 98460874 98460874 G A TMEM130 Silent p.L79L 0.10 TCGA-MP-A4TI-01 8 100883805 100883805 C T VPS13B Silent p.V3900V 0.14 TCGA-MP-A4TI-01 8 106815341 106815341 G T ZFPM2 Nonsense_Mutation p.E1011* 0.21 TCGA-MP-A4TI-01 8 134108461 134108461 G C TG Silent p.V2472V 0.07 TCGA-MP-A4TI-01 8 142505507 142505507 C G MROH5 Missense_Mutation p.K78N 0.13 tolerated(0.07) possibly_damaging(0.904) TCGA-MP-A4TI-01 8 144403516 144403516 G A TOP1MT Missense_Mutation p.A334V 0.08 tolerated(0.05) benign(0.014) TCGA-MP-A4TI-01 8 145692700 145692700 C T KIFC2 Missense_Mutation p.R149W 0.07 deleterious_low_confidence(0.02) benign(0.394) TCGA-MP-A4TI-01 8 21560409 21560409 G T GFRA2 Missense_Mutation p.P376T 0.23 tolerated(0.16) possibly_damaging(0.907) TCGA-MP-A4TI-01 8 35624496 35624496 C T UNC5D Missense_Mutation p.P797L 0.06 tolerated(0.21) benign(0.035) TCGA-MP-A4TI-01 8 51415347 51415347 C A SNTG1 Missense_Mutation p.L125I 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-MP-A4TI-01 8 70744570 70744570 C A SLCO5A1 Missense_Mutation p.M113I 0.22 tolerated_low_confidence(0.63) benign(0.004) TCGA-MP-A4TI-01 8 87549856 87549856 A T CPNE3 Silent p.L175L 0.06 TCGA-MP-A4TI-01 9 108397356 108397356 G T FKTN Silent p.L399L 0.08 TCGA-MP-A4TI-01 9 135778078 135778078 C T TSC1 Missense_Mutation p.D769N 0.08 deleterious(0.01) benign(0.027) TCGA-MP-A4TI-01 9 37692718 37692718 G A FRMPD1 Missense_Mutation p.R27H 0.10 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TI-01 9 78923570 78923570 G C PCSK5 Missense_Mutation p.R1178T 0.09 tolerated(0.61) benign(0.003) TCGA-MP-A4TI-01 X 101857412 101857412 A G ARMCX5 Missense_Mutation p.R115G 0.30 tolerated(0.1) benign(0.162) TCGA-MP-A4TI-01 X 109697875 109697875 C T RGAG1 Nonsense_Mutation p.Q1344* 0.33 TCGA-MP-A4TI-01 X 111698467 111698467 C T ZCCHC16 Nonsense_Mutation p.Q171* 0.24 TCGA-MP-A4TI-01 X 13061341 13061341 C T FAM9C Missense_Mutation p.E30K 0.09 deleterious(0.01) possibly_damaging(0.636) TCGA-MP-A4TI-01 X 135438286 135438286 G C GPR112 Missense_Mutation p.D2297H 0.29 deleterious(0) possibly_damaging(0.459) TCGA-MP-A4TI-01 X 1413304 1413304 C T CSF2RA Nonsense_Mutation p.Q244* 0.09 TCGA-MP-A4TI-01 X 30327009 30327009 C T NR0B1 Missense_Mutation p.V158M 0.30 deleterious_low_confidence(0.03) benign(0.243) TCGA-MP-A4TI-01 X 34961693 34961693 G A FAM47B Missense_Mutation p.V249M 0.07 tolerated(0.2) benign(0.006) TCGA-MP-A4TI-01 Y 3447938 3447938 G A TGIF2LY 3'UTR 0.08 TCGA-MP-A4TJ-01 10 106865239 106865239 C - SORCS3 Frame_Shift_Del p.L394Wfs*12 0.11 TCGA-MP-A4TJ-01 10 115985826 115985826 G A TDRD1 Missense_Mutation p.R1009H 0.07 deleterious(0) probably_damaging(0.984) TCGA-MP-A4TJ-01 10 50902734 50902734 G T C10orf53 Intron 0.15 TCGA-MP-A4TJ-01 10 5204938 5204938 C T AKR1CL1 Missense_Mutation p.V47I 0.08 tolerated(0.12) benign(0.055) TCGA-MP-A4TJ-01 10 85956336 85956336 G T CDHR1 Missense_Mutation p.S76I 0.06 deleterious_low_confidence(0) possibly_damaging(0.616) TCGA-MP-A4TJ-01 11 108158325 108158325 A T ATM Splice_Site p.X1332_splice 0.22 TCGA-MP-A4TJ-01 11 1093909 1093909 C A MUC2 Missense_Mutation p.P1910T 0.18 unknown(0) TCGA-MP-A4TJ-01 11 133715058 133715058 C T SPATA19 Missense_Mutation p.V36M 0.14 deleterious(0) probably_damaging(0.934) TCGA-MP-A4TJ-01 11 18497043 18497043 T C LDHAL6A Missense_Mutation p.L150S 0.08 deleterious(0) probably_damaging(1) TCGA-MP-A4TJ-01 11 27401839 27401839 C - LGR4 Frame_Shift_Del p.G317Efs*8 0.11 TCGA-MP-A4TJ-01 11 33308085 33308085 G C HIPK3 Missense_Mutation p.R42P 0.15 deleterious(0.03) benign(0.356) TCGA-MP-A4TJ-01 11 33581342 33581342 C A KIAA1549L Silent p.V1004V 0.17 TCGA-MP-A4TJ-01 11 51515630 51515630 G T OR4C46 Missense_Mutation p.A117S 0.21 deleterious_low_confidence(0.01) probably_damaging(0.956) TCGA-MP-A4TJ-01 11 55872744 55872744 A G OR8H2 Missense_Mutation p.T76A 0.14 deleterious(0) benign(0.039) TCGA-MP-A4TJ-01 11 57003303 57003303 C A APLNR 3'UTR 0.18 TCGA-MP-A4TJ-01 11 65486372 65486372 A G KAT5 Missense_Mutation p.K485E 0.13 deleterious(0.01) probably_damaging(0.954) TCGA-MP-A4TJ-01 11 65486377 65486377 G T KAT5 Missense_Mutation p.E486D 0.12 tolerated(0.19) benign(0.268) TCGA-MP-A4TJ-01 11 67069049 67069049 G A ANKRD13D Missense_Mutation p.R480Q 0.11 tolerated(0.22) probably_damaging(0.995) TCGA-MP-A4TJ-01 12 117768464 117768464 G C NOS1 Missense_Mutation p.H137Q 0.07 tolerated_low_confidence(0.36) benign(0.001) TCGA-MP-A4TJ-01 12 42503473 42503473 T C GXYLT1 Silent p.L169L 0.17 TCGA-MP-A4TJ-01 12 53012280 53012280 C - KRT73 Frame_Shift_Del p.G10Efs*108 0.16 TCGA-MP-A4TJ-01 12 53187978 53187978 G T KRT3 Nonsense_Mutation p.Y261* 0.12 TCGA-MP-A4TJ-01 12 57642983 57642983 G A STAC3 Missense_Mutation p.P59S 0.19 tolerated(0.14) benign(0.027) TCGA-MP-A4TJ-01 13 38158961 38158961 C G POSTN Missense_Mutation p.D334H 0.07 deleterious(0) possibly_damaging(0.812) TCGA-MP-A4TJ-01 13 52972320 52972320 T A THSD1 Missense_Mutation p.E23V 0.08 deleterious(0) possibly_damaging(0.846) TCGA-MP-A4TJ-01 13 84454563 84454563 G A SLITRK1 Silent p.N360N 0.15 TCGA-MP-A4TJ-01 14 31762385 31762385 A G RP11-596D21.1 Intron 0.16 TCGA-MP-A4TJ-01 14 61924377 61924377 T C PRKCH Missense_Mutation p.F420L 0.08 tolerated(0.07) benign(0.125) TCGA-MP-A4TJ-01 14 65253316 65253316 A T SPTB Missense_Mutation p.S1123T 0.19 tolerated(0.67) benign(0.001) TCGA-MP-A4TJ-01 15 101717763 101717763 G A CHSY1 Missense_Mutation p.H747Y 0.08 deleterious(0) probably_damaging(1) TCGA-MP-A4TJ-01 15 25467551 25467551 G A SNORD115-28 RNA 0.08 TCGA-MP-A4TJ-01 15 33358942 33358942 C A FMN1 Missense_Mutation p.G382C 0.08 deleterious(0) unknown(0) TCGA-MP-A4TJ-01 16 20681298 20681298 G A ACSM1 Missense_Mutation p.R255W 0.09 deleterious(0) benign(0.01) TCGA-MP-A4TJ-01 16 28604869 28604869 G A SULT1A2 Silent p.N131N 0.08 TCGA-MP-A4TJ-01 16 4491433 4491433 G T DNAJA3 Missense_Mutation p.D163Y 0.10 deleterious(0.01) probably_damaging(0.927) TCGA-MP-A4TJ-01 16 8987832 8987832 C T USP7 3'UTR 0.10 TCGA-MP-A4TJ-01 17 10369670 10369670 C A MYH4 Missense_Mutation p.D90Y 0.09 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TJ-01 17 39726468 39726468 A G KRT9 Missense_Mutation p.V216A 0.17 deleterious(0.01) benign(0.1) TCGA-MP-A4TJ-01 17 6547862 6547862 G A MED31 Silent p.H107H 0.18 TCGA-MP-A4TJ-01 17 67031813 67031813 A G ABCA9 Silent p.Y310Y 0.18 TCGA-MP-A4TJ-01 17 74080637 74080637 G T EXOC7 Silent p.I630I 0.29 TCGA-MP-A4TJ-01 18 10471888 10471888 G A APCDD1 Missense_Mutation p.V202M 0.11 deleterious(0.03) benign(0.03) TCGA-MP-A4TJ-01 18 14542740 14542740 G A POTEC Missense_Mutation p.R136C 0.07 deleterious(0.05) benign(0.004) TCGA-MP-A4TJ-01 18 14542831 14542831 G A POTEC Silent p.C105C 0.06 TCGA-MP-A4TJ-01 18 3879862 3879862 G C DLGAP1 Silent p.T69T 0.12 TCGA-MP-A4TJ-01 19 2833964 2833964 T C ZNF554 Missense_Mutation p.L244S 0.10 tolerated(0.43) benign(0.073) TCGA-MP-A4TJ-01 19 42818473 42818473 T A TMEM145 Missense_Mutation p.L57Q 0.14 deleterious(0) probably_damaging(0.969) TCGA-MP-A4TJ-01 19 43762549 43762549 G T PSG9 Missense_Mutation p.L350I 0.13 tolerated(0.25) probably_damaging(0.975) TCGA-MP-A4TJ-01 19 48339500 48339500 G T CRX Missense_Mutation p.S34I 0.18 deleterious(0.01) benign(0.16) TCGA-MP-A4TJ-01 19 50461700 50461700 G C SIGLEC11 Missense_Mutation p.N497K 0.12 deleterious(0.03) benign(0.424) TCGA-MP-A4TJ-01 19 52394239 52394239 A T ZNF649 Missense_Mutation p.S384T 0.06 tolerated(0.21) benign(0.132) TCGA-MP-A4TJ-01 19 53770421 53770421 G A VN1R4 Silent p.Y166Y 0.13 TCGA-MP-A4TJ-01 1 109284427 109284427 C G FNDC7 3'UTR 0.09 TCGA-MP-A4TJ-01 1 12855737 12855737 C A PRAMEF1 Silent p.P339P 0.08 TCGA-MP-A4TJ-01 1 151504882 151504882 A G CGN Missense_Mutation p.E859G 0.08 deleterious(0.01) benign(0.008) TCGA-MP-A4TJ-01 1 158607824 158607824 C A SPTA1 Nonsense_Mutation p.E1730* 0.07 TCGA-MP-A4TJ-01 1 167096578 167096578 A T DUSP27 Missense_Mutation p.Q737L 0.08 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TJ-01 1 175372516 175372516 C T TNR Missense_Mutation p.V246M 0.16 tolerated(0.08) benign(0.068) TCGA-MP-A4TJ-01 1 185969288 185969288 C T HMCN1 Missense_Mutation p.T1329I 0.10 probably_damaging(0.998) TCGA-MP-A4TJ-01 1 247835921 247835921 C A OR13G1 Missense_Mutation p.L141F 0.06 deleterious(0.01) possibly_damaging(0.881) TCGA-MP-A4TJ-01 1 248343887 248343887 C T OR2M2 Silent p.F200F 0.09 TCGA-MP-A4TJ-01 1 248366527 248366527 C A OR2M3 Missense_Mutation p.T53N 0.08 tolerated(0.06) benign(0.009) TCGA-MP-A4TJ-01 1 248436778 248436778 T C OR2T33 Silent p.L113L 0.09 TCGA-MP-A4TJ-01 1 32086547 32086547 C T HCRTR1 Missense_Mutation p.A161V 0.11 deleterious(0) possibly_damaging(0.896) TCGA-MP-A4TJ-01 1 54605298 54605298 G A CDCP2 Silent p.L415L 0.07 TCGA-MP-A4TJ-01 1 7724790 7724790 G A CAMTA1 Missense_Mutation p.R728Q 0.13 tolerated_low_confidence(0.3) probably_damaging(0.99) TCGA-MP-A4TJ-01 20 13866984 13866984 T A SEL1L2 Missense_Mutation p.I284L 0.20 tolerated(1) benign(0.003) TCGA-MP-A4TJ-01 20 23016628 23016628 G A SSTR4 Missense_Mutation p.V170M 0.07 deleterious(0.02) probably_damaging(0.968) TCGA-MP-A4TJ-01 22 17579776 17579776 G A IL17RA Missense_Mutation p.R141Q 0.13 tolerated(0.09) benign(0.035) TCGA-MP-A4TJ-01 2 125281949 125281949 C G CNTNAP5 Missense_Mutation p.T465S 0.11 tolerated(0.14) benign(0.099) TCGA-MP-A4TJ-01 2 15615878 15615878 G T NBAS Missense_Mutation p.S425Y 0.07 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TJ-01 2 185803180 185803180 A G ZNF804A Silent p.T1019T 0.06 TCGA-MP-A4TJ-01 2 231155242 231155242 G T SP140 Silent p.G596G 0.07 TCGA-MP-A4TJ-01 2 33505166 33505166 G T LTBP1 Missense_Mutation p.G1018V 0.06 deleterious(0) probably_damaging(1) TCGA-MP-A4TJ-01 2 70906082 70906082 T C ADD2 Silent p.T379T 0.09 TCGA-MP-A4TJ-01 2 89416936 89416936 C A IGKV1-17 Missense_Mutation p.R83M 0.18 deleterious(0.01) probably_damaging(0.922) TCGA-MP-A4TJ-01 3 100348497 100348497 C A GPR128 Silent p.T57T 0.09 TCGA-MP-A4TJ-01 3 154832934 154832934 C T MME Silent p.V116V 0.26 TCGA-MP-A4TJ-01 3 38278358 38278358 G A OXSR1 Missense_Mutation p.R327H 0.10 tolerated(0.29) benign(0.008) TCGA-MP-A4TJ-01 4 88343961 88343961 A G NUDT9 5'UTR 0.20 TCGA-MP-A4TJ-01 4 99812437 99812437 C G EIF4E Missense_Mutation p.A58P 0.10 tolerated(0.1) possibly_damaging(0.782) TCGA-MP-A4TJ-01 5 109124647 109124647 G C MAN2A1 Silent p.S591S 0.19 TCGA-MP-A4TJ-01 5 126755819 126755819 G T MEGF10 Missense_Mutation p.G504W 0.11 deleterious(0) probably_damaging(0.964) TCGA-MP-A4TJ-01 5 140783982 140783982 T C PCDHGA9 Missense_Mutation p.I488T 0.07 tolerated_low_confidence(1) benign(0.003) TCGA-MP-A4TJ-01 5 33881256 33881256 C A ADAMTS12 Missense_Mutation p.G153W 0.17 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TJ-01 5 43139272 43139272 A T ZNF131 Missense_Mutation p.S78C 0.05 deleterious(0.03) possibly_damaging(0.891) TCGA-MP-A4TJ-01 5 64748720 64748720 C A ADAMTS6 Missense_Mutation p.W219C 0.10 tolerated(0.12) benign(0.008) TCGA-MP-A4TJ-01 5 64748726 64748726 T G ADAMTS6 Missense_Mutation p.K217N 0.10 tolerated(0.15) benign(0.001) TCGA-MP-A4TJ-01 6 28540255 28540255 T C SCAND3 Silent p.K1137K 0.12 TCGA-MP-A4TJ-01 6 29591120 29591120 T A GABBR1 Missense_Mutation p.I309F 0.11 deleterious(0.05) possibly_damaging(0.717) TCGA-MP-A4TJ-01 6 35825060 35825060 T A SRPK1 Missense_Mutation p.D533V 0.15 deleterious(0) probably_damaging(1) TCGA-MP-A4TJ-01 6 57048723 57048723 T G BAG2 Missense_Mutation p.F124C 0.10 tolerated(0.1) benign(0.166) TCGA-MP-A4TJ-01 6 7398966 7398966 T C RIOK1 Missense_Mutation p.V158A 0.08 tolerated(0.28) possibly_damaging(0.725) TCGA-MP-A4TJ-01 6 97063683 97063683 C T FHL5 3'UTR 0.12 TCGA-MP-A4TJ-01 7 1040160 1040160 C T C7orf50 Silent p.R117R 0.12 TCGA-MP-A4TJ-01 7 113519315 113519315 C A PPP1R3A Missense_Mutation p.G611V 0.07 tolerated(0.06) benign(0.312) TCGA-MP-A4TJ-01 7 20768076 20768076 C T ABCB5 Silent p.F955F 0.14 TCGA-MP-A4TJ-01 7 26232877 26232877 C A HNRNPA2B1 Missense_Mutation p.G332C 0.11 deleterious(0) benign(0.14) TCGA-MP-A4TJ-01 7 38388966 38388966 G T TRGV5 Missense_Mutation p.T115N 0.20 tolerated(0.22) benign(0.02) TCGA-MP-A4TJ-01 7 48634336 48634336 T C ABCA13 Missense_Mutation p.S4891P 0.11 probably_damaging(0.999) TCGA-MP-A4TJ-01 7 6026570 6026570 A C PMS2 Missense_Mutation p.V609G 0.07 tolerated(0.09) possibly_damaging(0.707) TCGA-MP-A4TJ-01 7 72722736 72722736 G A NSUN5 Nonsense_Mutation p.Q18* 0.16 TCGA-MP-A4TJ-01 7 73456953 73456953 C A ELN Missense_Mutation p.A81D 0.16 unknown(0) TCGA-MP-A4TJ-01 8 110355839 110355839 A G ENY2 3'UTR 0.39 TCGA-MP-A4TJ-01 8 77776386 77776386 C A ZFHX4 Missense_Mutation p.A3479E 0.26 probably_damaging(0.994) TCGA-MP-A4TJ-01 8 89180030 89180030 G T MMP16 Missense_Mutation p.H193N 0.07 deleterious(0) probably_damaging(1) TCGA-MP-A4TJ-01 9 113703833 113703833 T A LPAR1 Missense_Mutation p.M221L 0.14 deleterious(0.01) benign(0.146) TCGA-MP-A4TJ-01 9 127715064 127715064 T C SCAI 3'Flank 0.17 TCGA-MP-A4TJ-01 9 134346228 134346228 C A PRRC2B Missense_Mutation p.H655Q 0.10 deleterious(0.04) possibly_damaging(0.881) TCGA-MP-A4TJ-01 9 32407428 32407428 G T ACO1 Splice_Site p.X89_splice 0.13 TCGA-MP-A4TJ-01 9 35846586 35846586 C A TMEM8B Nonsense_Mutation p.Y206* 0.33 TCGA-MP-A4TJ-01 9 6420991 6420991 A G UHRF2 Missense_Mutation p.D78G 0.09 tolerated(0.21) benign(0.03) TCGA-MP-A4TJ-01 9 8499821 8499821 G T PTPRD Silent p.R716R 0.25 TCGA-MP-A4TJ-01 9 86917186 86917186 G C SLC28A3 Nonsense_Mutation p.Y151* 0.15 TCGA-MP-A4TJ-01 9 91617049 91617049 C G S1PR3 Missense_Mutation p.L312V 0.19 tolerated(0.27) possibly_damaging(0.751) TCGA-MP-A4TJ-01 X 129190016 129190016 C T BCORL1 Missense_Mutation p.P1681S 0.16 benign(0.101) TCGA-MP-A4TJ-01 X 129813577 129813577 C A ENOX2 Missense_Mutation p.K162N 0.16 deleterious(0) possibly_damaging(0.56) TCGA-MP-A4TJ-01 X 151366193 151366193 C A GABRA3 Missense_Mutation p.Q281H 0.15 deleterious(0.01) possibly_damaging(0.533) TCGA-MP-A4TK-01 10 101590192 101590192 T C ABCC2 Splice_Site p.X916_splice 0.16 TCGA-MP-A4TK-01 10 102746373 102746373 C T MRPL43 Intron 0.20 TCGA-MP-A4TK-01 10 104128006 104128006 A G GBF1 Missense_Mutation p.T891A 0.14 deleterious(0.01) benign(0.354) TCGA-MP-A4TK-01 10 118969033 118969033 C A KCNK18 Silent p.T126T 0.27 TCGA-MP-A4TK-01 10 25888009 25888009 C T GPR158 Missense_Mutation p.R1152C 0.17 deleterious(0.04) benign(0.39) TCGA-MP-A4TK-01 10 48371219 48371219 C T ZNF488 Silent p.L229L 0.16 TCGA-MP-A4TK-01 10 64960397 64960397 G T JMJD1C Silent p.V1705V 0.11 TCGA-MP-A4TK-01 10 65225295 65225295 C A JMJD1C Missense_Mutation p.R43L 0.53 deleterious(0) probably_damaging(0.997) TCGA-MP-A4TK-01 10 68280387 68280387 G T CTNNA3 Missense_Mutation p.L507I 0.13 deleterious(0.01) possibly_damaging(0.822) TCGA-MP-A4TK-01 10 68280388 68280388 G T CTNNA3 Missense_Mutation p.F506L 0.12 deleterious(0) possibly_damaging(0.453) TCGA-MP-A4TK-01 10 73828004 73828004 T A SPOCK2 Missense_Mutation p.E177V 0.30 deleterious(0.02) benign(0.032) TCGA-MP-A4TK-01 10 90707082 90707082 C G ACTA2 Missense_Mutation p.R64T 0.15 deleterious_low_confidence(0) possibly_damaging(0.894) TCGA-MP-A4TK-01 11 100922228 100922228 C A PGR Missense_Mutation p.G762C 0.12 deleterious(0.02) probably_damaging(0.995) TCGA-MP-A4TK-01 11 121461782 121461782 G T SORL1 Missense_Mutation p.G1429V 0.38 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TK-01 11 30928087 30928087 C G DCDC1 Missense_Mutation p.E1368D 0.12 deleterious(0) benign(0) TCGA-MP-A4TK-01 11 33880935 33880935 G C LMO2 Missense_Mutation p.I217M 0.05 deleterious(0.02) probably_damaging(0.992) TCGA-MP-A4TK-01 11 45246543 45246543 G T PRDM11 3'UTR 0.16 TCGA-MP-A4TK-01 11 46785064 46785064 C T CKAP5 Silent p.Q1218Q 0.14 TCGA-MP-A4TK-01 11 4976806 4976806 G T OR51A2 Silent p.T46T 0.12 TCGA-MP-A4TK-01 11 55595440 55595440 C T OR5L2 Missense_Mutation p.T249I 0.09 tolerated(0.26) benign(0.015) TCGA-MP-A4TK-01 11 55798441 55798441 C A OR5AS1 Missense_Mutation p.P183T 0.08 deleterious(0.02) probably_damaging(0.957) TCGA-MP-A4TK-01 11 56143856 56143856 G T OR8U1 Missense_Mutation p.G253W 0.24 deleterious(0) probably_damaging(0.99) TCGA-MP-A4TK-01 11 56185160 56185160 G A OR5R1 Silent p.P183P 0.18 TCGA-MP-A4TK-01 11 56258733 56258733 C A OR5M8 Silent p.V38V 0.10 TCGA-MP-A4TK-01 11 57996176 57996176 T A OR10Q1 Missense_Mutation p.T58S 0.18 tolerated(1) benign(0) TCGA-MP-A4TK-01 11 5862376 5862376 G T OR52E6 Missense_Mutation p.A251D 0.10 deleterious(0) possibly_damaging(0.719) TCGA-MP-A4TK-01 11 5862664 5862664 A T OR52E6 Nonsense_Mutation p.L155* 0.15 TCGA-MP-A4TK-01 11 59271544 59271544 C T OR4D11 Missense_Mutation p.L166F 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-MP-A4TK-01 11 59860900 59860900 G T MS4A2 Missense_Mutation p.A136S 0.13 deleterious(0.03) benign(0.342) TCGA-MP-A4TK-01 11 59939613 59939613 A G MS4A6A 3'Flank 0.21 TCGA-MP-A4TK-01 11 59943065 59943065 C G MS4A6A Missense_Mutation p.G148A 0.13 tolerated(0.88) benign(0.01) TCGA-MP-A4TK-01 11 61015981 61015981 G T PGA5 Missense_Mutation p.E249D 0.09 tolerated(0.06) benign(0.037) TCGA-MP-A4TK-01 11 61300518 61300518 G C SYT7 Silent p.T173T 0.11 TCGA-MP-A4TK-01 11 62415198 62415198 T A INTS5 Missense_Mutation p.H785L 0.11 tolerated(0.32) benign(0.114) TCGA-MP-A4TK-01 11 64359296 64359296 C A SLC22A12 Missense_Mutation p.R90S 0.16 deleterious(0) probably_damaging(0.948) TCGA-MP-A4TK-01 11 66325225 66325225 C A CTD-3074O7.2 3'Flank 0.17 TCGA-MP-A4TK-01 11 6649860 6649860 C A DCHS1 Missense_Mutation p.R1788L 0.13 deleterious(0.02) benign(0.023) TCGA-MP-A4TK-01 11 68777342 68777342 G A MRGPRF Missense_Mutation p.H10Y 0.10 tolerated_low_confidence(0.09) benign(0.002) TCGA-MP-A4TK-01 11 6953462 6953462 G T ZNF215 5'UTR 0.09 TCGA-MP-A4TK-01 11 73849816 73849816 C T C2CD3 Missense_Mutation p.D302N 0.09 tolerated(0.36) benign(0.012) TCGA-MP-A4TK-01 11 77991884 77991884 C A GAB2 Nonsense_Mutation p.E47* 0.10 TCGA-MP-A4TK-01 11 77991885 77991885 C T GAB2 Silent p.L46L 0.10 TCGA-MP-A4TK-01 11 87013415 87013415 G T TMEM135 Missense_Mutation p.R210I 0.10 tolerated(0.2) benign(0.038) TCGA-MP-A4TK-01 11 92523186 92523186 G A FAT3 Silent p.E1471E 0.25 TCGA-MP-A4TK-01 12 101442178 101442178 G T ANO4 Missense_Mutation p.W402C 0.12 deleterious(0) probably_damaging(1) TCGA-MP-A4TK-01 12 10218303 10218303 C A CLEC9A 3'UTR 0.27 TCGA-MP-A4TK-01 12 108105911 108105911 G A PWP1 Missense_Mutation p.E474K 0.07 tolerated(0.15) benign(0.045) TCGA-MP-A4TK-01 12 108620910 108620910 T A WSCD2 Missense_Mutation p.S316R 0.14 tolerated(0.38) benign(0.001) TCGA-MP-A4TK-01 12 115120681 115120681 C A TBX3 Missense_Mutation p.A109S 0.23 tolerated(0.24) benign(0.231) TCGA-MP-A4TK-01 12 124332538 124332538 G T DNAH10 Missense_Mutation p.A1831S 0.17 probably_damaging(0.984) TCGA-MP-A4TK-01 12 125834065 125834065 G T TMEM132B Silent p.T40T 0.10 TCGA-MP-A4TK-01 12 133324508 133324508 C T ANKLE2 Missense_Mutation p.M380I 0.14 deleterious(0.05) benign(0.035) TCGA-MP-A4TK-01 12 13717189 13717189 C T GRIN2B Missense_Mutation p.G995S 0.36 tolerated(0.08) possibly_damaging(0.809) TCGA-MP-A4TK-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.38 deleterious(0) possibly_damaging(0.479) TCGA-MP-A4TK-01 12 27152467 27152467 G A TM7SF3 Missense_Mutation p.S130L 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-MP-A4TK-01 12 33003756 33003756 C A PKP2 Missense_Mutation p.R441L 0.42 tolerated(0.37) benign(0.009) TCGA-MP-A4TK-01 12 41961624 41961624 T A PDZRN4 Missense_Mutation p.L503I 0.23 deleterious(0.02) probably_damaging(0.996) TCGA-MP-A4TK-01 12 43822162 43822162 T A ADAMTS20 Missense_Mutation p.Q1276L 0.16 tolerated(0.1) possibly_damaging(0.559) TCGA-MP-A4TK-01 12 43945011 43945011 C T ADAMTS20 Missense_Mutation p.G52R 0.16 deleterious(0) probably_damaging(1) TCGA-MP-A4TK-01 12 48272780 48272780 C G VDR Missense_Mutation p.M89I 0.12 deleterious(0.01) benign(0.253) TCGA-MP-A4TK-01 12 48383570 48383570 C A COL2A1 Missense_Mutation p.G348C 0.09 unknown(0) TCGA-MP-A4TK-01 12 48386711 48386711 G C COL2A1 Missense_Mutation p.P325A 0.19 unknown(0) TCGA-MP-A4TK-01 12 49422659 49422659 T A KMT2D Missense_Mutation p.K4778N 0.16 unknown(0) TCGA-MP-A4TK-01 12 5154534 5154534 G T KCNA5 Silent p.V407V 0.19 TCGA-MP-A4TK-01 12 51733746 51733746 G T CELA1 Silent p.P169P 0.16 TCGA-MP-A4TK-01 12 52080980 52080980 A T SCN8A Missense_Mutation p.L197F 0.19 tolerated(0.06) probably_damaging(0.999) TCGA-MP-A4TK-01 12 56536482 56536482 C A ESYT1 Missense_Mutation p.P962T 0.14 tolerated(0.25) benign(0.096) TCGA-MP-A4TK-01 12 57009107 57009107 G A BAZ2A Missense_Mutation p.R143W 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-MP-A4TK-01 12 57971861 57971861 A T KIF5A Nonsense_Mutation p.K811* 0.04 TCGA-MP-A4TK-01 12 57987807 57987807 G A PIP4K2C Splice_Site p.X59_splice 0.05 TCGA-MP-A4TK-01 12 69965131 69965131 T G FRS2 Missense_Mutation p.I110R 0.04 deleterious(0) possibly_damaging(0.717) TCGA-MP-A4TK-01 12 85285610 85285610 C A SLC6A15 Splice_Site p.X97_splice 0.13 TCGA-MP-A4TK-01 13 113563574 113563574 G A MCF2L Silent p.S59S 0.10 TCGA-MP-A4TK-01 13 26621084 26621084 C A SHISA2 Missense_Mutation p.S152I 0.16 deleterious(0.01) possibly_damaging(0.812) TCGA-MP-A4TK-01 13 27246096 27246096 A T WASF3 Missense_Mutation p.E170D 0.17 deleterious(0) benign(0.038) TCGA-MP-A4TK-01 13 37014302 37014302 G T CCNA1 Missense_Mutation p.R360S 0.13 deleterious(0.04) possibly_damaging(0.832) TCGA-MP-A4TK-01 13 41345277 41345277 G A MRPS31 5'UTR 0.17 TCGA-MP-A4TK-01 13 46946333 46946333 G T KIAA0226L Nonsense_Mutation p.S93* 0.14 TCGA-MP-A4TK-01 13 46946509 46946509 G T KIAA0226L Missense_Mutation p.N34K 0.12 tolerated(0.06) benign(0.05) TCGA-MP-A4TK-01 13 70456627 70456627 C A KLHL1 Nonsense_Mutation p.E339* 0.23 TCGA-MP-A4TK-01 13 70456628 70456628 C A KLHL1 Splice_Site p.X339_splice 0.23 TCGA-MP-A4TK-01 13 78143520 78143520 C T SCEL Missense_Mutation p.S138L 0.15 tolerated(1) benign(0.004) TCGA-MP-A4TK-01 13 88329492 88329492 G T SLITRK5 Missense_Mutation p.D617Y 0.18 deleterious(0.03) benign(0.039) TCGA-MP-A4TK-01 14 100184456 100184456 G A CYP46A1 Missense_Mutation p.V325M 0.11 tolerated(0.13) benign(0.009) TCGA-MP-A4TK-01 14 104643500 104643500 C A KIF26A Missense_Mutation p.P1459T 0.25 tolerated(0.48) benign(0.026) TCGA-MP-A4TK-01 14 105861129 105861129 A G PACS2 3'UTR 0.24 TCGA-MP-A4TK-01 14 20248864 20248864 G T OR4M1 Missense_Mutation p.R128L 0.12 deleterious(0) benign(0.217) TCGA-MP-A4TK-01 14 20585873 20585873 C A OR4K17 Missense_Mutation p.T103N 0.10 deleterious(0.04) benign(0.138) TCGA-MP-A4TK-01 14 20767578 20767578 C A TTC5 Silent p.L142L 0.12 TCGA-MP-A4TK-01 14 23940127 23940127 A T NGDN Missense_Mutation p.T29S 0.20 tolerated(0.14) probably_damaging(0.942) TCGA-MP-A4TK-01 14 39721951 39721951 G A MIA2 Splice_Site p.X523_splice 0.12 TCGA-MP-A4TK-01 14 45374605 45374605 A T C14orf28 Missense_Mutation p.E262V 0.11 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-MP-A4TK-01 14 47342682 47342682 A T MDGA2 Silent p.T902T 0.12 TCGA-MP-A4TK-01 14 51081230 51081230 G A ATL1 Splice_Site p.X288_splice 0.09 TCGA-MP-A4TK-01 14 55241779 55241779 G A SAMD4A Missense_Mutation p.G615S 0.12 tolerated(0.49) probably_damaging(1) TCGA-MP-A4TK-01 14 59930848 59930848 G T GPR135 Nonsense_Mutation p.S366* 0.15 TCGA-MP-A4TK-01 14 61446174 61446174 G C TRMT5 Missense_Mutation p.H148D 0.10 tolerated(0.28) benign(0) TCGA-MP-A4TK-01 14 70477595 70477595 C A SMOC1 Missense_Mutation p.H263Q 0.10 deleterious(0) possibly_damaging(0.799) TCGA-MP-A4TK-01 14 73140963 73140963 C A DPF3 Missense_Mutation p.D286Y 0.20 deleterious(0) possibly_damaging(0.635) TCGA-MP-A4TK-01 14 74969971 74969971 G T LTBP2 Missense_Mutation p.D1613E 0.10 tolerated(0.27) probably_damaging(0.958) TCGA-MP-A4TK-01 14 81609461 81609461 C T TSHR Silent p.Y353Y 0.15 TCGA-MP-A4TK-01 15 101605871 101605871 T C LRRK1 Silent p.S1743S 0.32 TCGA-MP-A4TK-01 15 22382499 22382499 G T OR4N4 Silent p.V9V 0.14 TCGA-MP-A4TK-01 15 25616590 25616590 A C UBE3A Missense_Mutation p.L247R 0.12 deleterious(0.03) possibly_damaging(0.887) TCGA-MP-A4TK-01 15 52879354 52879354 T C FAM214A Missense_Mutation p.I957M 0.12 deleterious(0) probably_damaging(0.933) TCGA-MP-A4TK-01 15 83328232 83328232 G T AP3B2 3'UTR 0.39 TCGA-MP-A4TK-01 15 85164419 85164419 G C ZSCAN2 Missense_Mutation p.E331D 0.19 deleterious(0) probably_damaging(0.971) TCGA-MP-A4TK-01 16 1891923 1891923 A G MEIOB Missense_Mutation p.L311S 0.15 tolerated(0.19) benign(0.021) TCGA-MP-A4TK-01 16 20432684 20432684 C A ACSM5 Missense_Mutation p.S243Y 0.12 deleterious(0) probably_damaging(0.982) TCGA-MP-A4TK-01 16 28840733 28840733 G T ATXN2L Missense_Mutation p.W251C 0.44 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TK-01 16 30364772 30364772 G A CD2BP2 Missense_Mutation p.P242L 0.20 tolerated(0.22) benign(0.013) TCGA-MP-A4TK-01 16 3119036 3119036 C T IL32 Nonsense_Mutation p.R83* 0.09 TCGA-MP-A4TK-01 16 31503523 31503523 C A C16orf58 Missense_Mutation p.R409L 0.23 tolerated(0.73) benign(0.002) TCGA-MP-A4TK-01 16 418328 418328 C G MRPL28 Missense_Mutation p.K221N 0.23 deleterious(0.04) benign(0.382) TCGA-MP-A4TK-01 16 58438668 58438668 G T GINS3 3'UTR 0.36 TCGA-MP-A4TK-01 16 66430075 66430075 C T CDH5 Missense_Mutation p.T444I 0.13 deleterious(0.04) probably_damaging(0.995) TCGA-MP-A4TK-01 16 68156120 68156120 C G NFATC3 Missense_Mutation p.Q112E 0.14 tolerated(0.32) probably_damaging(0.983) TCGA-MP-A4TK-01 16 68598074 68598074 A T ZFP90 Missense_Mutation p.I462F 0.26 tolerated(0.7) benign(0.004) TCGA-MP-A4TK-01 16 70292121 70292121 C T AARS Splice_Site p.X665_splice 0.23 TCGA-MP-A4TK-01 16 71007821 71007821 C T HYDIN Missense_Mutation p.G1714R 0.09 probably_damaging(0.998) TCGA-MP-A4TK-01 16 72137632 72137632 C T DHX38 Missense_Mutation p.A590V 0.21 deleterious(0) probably_damaging(1) TCGA-MP-A4TK-01 16 81385211 81385211 C T GAN Missense_Mutation p.P64L 0.21 deleterious(0.01) possibly_damaging(0.699) TCGA-MP-A4TK-01 16 87678008 87678008 C A JPH3 Missense_Mutation p.A176E 0.25 deleterious(0.02) benign(0.203) TCGA-MP-A4TK-01 17 10219063 10219063 C A MYH13 Missense_Mutation p.A1311S 0.17 tolerated(0.88) benign(0.005) TCGA-MP-A4TK-01 17 10358513 10358513 G T MYH4 Silent p.T758T 0.21 TCGA-MP-A4TK-01 17 11872848 11872848 C A DNAH9 3'UTR 0.14 TCGA-MP-A4TK-01 17 16005057 16005057 G C NCOR1 Missense_Mutation p.P733A 0.37 benign(0.011) TCGA-MP-A4TK-01 17 19186416 19186416 T A EPN2 5'UTR 0.48 TCGA-MP-A4TK-01 17 25972376 25972376 G T LGALS9 Splice_Site p.X192_splice 0.17 TCGA-MP-A4TK-01 17 26976080 26976080 C T SDF2 Nonsense_Mutation p.W188* 0.17 TCGA-MP-A4TK-01 17 27010351 27010351 G T SUPT6H Silent p.L648L 0.09 TCGA-MP-A4TK-01 17 30190434 30190434 C G UTP6 Missense_Mutation p.E580Q 0.07 tolerated(0.11) benign(0.045) TCGA-MP-A4TK-01 17 33680458 33680458 T A SLFN11 Missense_Mutation p.I607F 0.18 deleterious(0) probably_damaging(0.98) TCGA-MP-A4TK-01 17 34308430 34308430 A T CCL16 Silent p.S9S 0.14 TCGA-MP-A4TK-01 17 37441767 37441767 C A FBXL20 Missense_Mutation p.C153F 0.14 deleterious(0) probably_damaging(0.954) TCGA-MP-A4TK-01 17 38447375 38447375 G C CDC6 Missense_Mutation p.E82Q 0.10 deleterious(0.01) probably_damaging(0.917) TCGA-MP-A4TK-01 17 38457222 38457222 G T CDC6 Missense_Mutation p.L464F 0.17 deleterious(0.01) possibly_damaging(0.665) TCGA-MP-A4TK-01 17 39521052 39521052 A C KRT33B Missense_Mutation p.L359R 0.15 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TK-01 17 41222996 41222996 C A BRCA1 Missense_Mutation p.R1666S 0.13 deleterious(0.04) benign(0.112) TCGA-MP-A4TK-01 17 44060902 44060902 G T MAPT Silent p.R244R 0.20 TCGA-MP-A4TK-01 17 46606855 46606855 G T HOXB1 3'UTR 0.17 TCGA-MP-A4TK-01 17 4688618 4688618 G A VMO1 3'UTR 0.54 TCGA-MP-A4TK-01 17 48615485 48615485 G T EPN3 Missense_Mutation p.R203L 0.12 deleterious(0.01) benign(0.134) TCGA-MP-A4TK-01 17 62135179 62135179 T A ERN1 Missense_Mutation p.I461F 0.13 deleterious(0.04) benign(0.148) TCGA-MP-A4TK-01 17 64875124 64875124 T A CACNG5 Nonsense_Mutation p.Y77* 0.15 TCGA-MP-A4TK-01 17 66982403 66982403 C A ABCA9 Missense_Mutation p.E1370D 0.23 deleterious(0.02) possibly_damaging(0.791) TCGA-MP-A4TK-01 17 68128158 68128158 A - KCNJ16 5'UTR 0.12 TCGA-MP-A4TK-01 17 7318356 7318356 G T NLGN2 Missense_Mutation p.R309L 0.36 tolerated(0.18) possibly_damaging(0.491) TCGA-MP-A4TK-01 17 73238914 73238914 C A GGA3 Nonsense_Mutation p.E203* 0.09 TCGA-MP-A4TK-01 17 74077469 74077469 T A ZACN Missense_Mutation p.C219S 0.08 tolerated(0.44) benign(0.045) TCGA-MP-A4TK-01 17 7577556 7577556 C A TP53 Missense_Mutation p.C242F 0.42 deleterious(0) probably_damaging(1) TCGA-MP-A4TK-01 17 76499139 76499139 C A DNAH17 Intron 0.15 TCGA-MP-A4TK-01 17 77758759 77758759 C T CBX2 Missense_Mutation p.T506I 0.12 deleterious(0) probably_damaging(0.913) TCGA-MP-A4TK-01 17 7797466 7797466 G A CHD3 Missense_Mutation p.E379K 0.12 benign(0.292) TCGA-MP-A4TK-01 17 8784263 8784263 G A PIK3R5 Silent p.C818C 0.08 TCGA-MP-A4TK-01 18 10468556 10468556 C G APCDD1 Nonsense_Mutation p.S50* 0.09 TCGA-MP-A4TK-01 18 14478927 14478927 C G CXADRP3 RNA 0.20 TCGA-MP-A4TK-01 18 214838 214838 G T THOC1 Missense_Mutation p.L588M 0.36 deleterious(0) probably_damaging(1) TCGA-MP-A4TK-01 18 3187488 3187488 G A MYOM1 Missense_Mutation p.R307C 0.09 deleterious(0) probably_damaging(0.993) TCGA-MP-A4TK-01 18 34205489 34205489 G T FHOD3 Nonsense_Mutation p.E325* 0.22 TCGA-MP-A4TK-01 18 42533108 42533108 G T SETBP1 Missense_Mutation p.G1268V 0.36 tolerated_low_confidence(0.31) possibly_damaging(0.837) TCGA-MP-A4TK-01 18 43262416 43262416 T A SLC14A2 Missense_Mutation p.Y899N 0.33 deleterious(0) benign(0.372) TCGA-MP-A4TK-01 18 47405327 47405327 C A MYO5B Missense_Mutation p.M1088I 0.32 tolerated(0.27) benign(0.001) TCGA-MP-A4TK-01 18 67614118 67614118 C G CD226 Missense_Mutation p.R78S 0.15 deleterious(0) possibly_damaging(0.828) TCGA-MP-A4TK-01 18 77891036 77891036 G T ADNP2 Missense_Mutation p.W53C 0.35 deleterious(0) probably_damaging(0.997) TCGA-MP-A4TK-01 19 12060271 12060271 G T ZNF700 Nonsense_Mutation p.E478* 0.29 TCGA-MP-A4TK-01 19 2229803 2229803 C T DOT1L 3'UTR 0.15 TCGA-MP-A4TK-01 19 39589283 39589283 C T PAPL Missense_Mutation p.P103S 0.24 deleterious(0.02) possibly_damaging(0.566) TCGA-MP-A4TK-01 19 42583222 42583222 A T ZNF574 Missense_Mutation p.K155M 0.33 tolerated(0.09) benign(0.024) TCGA-MP-A4TK-01 19 48789060 48789060 C A ZNF114 Missense_Mutation p.P60Q 0.19 tolerated(0.86) benign(0.053) TCGA-MP-A4TK-01 19 49674891 49674891 G T TRPM4 Silent p.G305G 0.25 TCGA-MP-A4TK-01 19 52722945 52722945 G T PPP2R1A Missense_Mutation p.C377F 0.36 tolerated(1) benign(0.01) TCGA-MP-A4TK-01 19 55815433 55815433 T C BRSK1 Silent p.S434S 0.47 TCGA-MP-A4TK-01 19 56204343 56204343 G T EPN1 Missense_Mutation p.D488Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TK-01 19 56953401 56953401 T G ZNF667 Missense_Mutation p.Q321H 0.31 tolerated(0.09) benign(0.008) TCGA-MP-A4TK-01 19 5746053 5746053 C A CATSPERD Missense_Mutation p.L263M 0.33 deleterious(0) probably_damaging(1) TCGA-MP-A4TK-01 19 57953309 57953309 C T ZNF749 Silent p.I24I 0.04 TCGA-MP-A4TK-01 19 6496096 6496096 C A TUBB4A Silent p.S138S 0.33 TCGA-MP-A4TK-01 1 102290643 102290643 C T OLFM3 Silent p.E177E 0.14 TCGA-MP-A4TK-01 1 103400022 103400022 C A COL11A1 Missense_Mutation p.G1195C 0.10 unknown(0) TCGA-MP-A4TK-01 1 107979309 107979309 C A NTNG1 Silent p.G426G 0.12 TCGA-MP-A4TK-01 1 11199668 11199668 C A MTOR Silent p.R1640R 0.09 TCGA-MP-A4TK-01 1 115576769 115576769 G A TSHB Missense_Mutation p.S113N 0.14 tolerated(0.23) benign(0.371) TCGA-MP-A4TK-01 1 118439530 118439530 T C GDAP2 Missense_Mutation p.D293G 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-MP-A4TK-01 1 118479397 118479397 A T WDR3 Silent p.T129T 0.12 TCGA-MP-A4TK-01 1 147381023 147381023 G T GJA8 Missense_Mutation p.R314L 0.28 tolerated(0.11) possibly_damaging(0.495) TCGA-MP-A4TK-01 1 152957926 152957926 C A SPRR1A Missense_Mutation p.P74T 0.13 tolerated(0.05) probably_damaging(0.995) TCGA-MP-A4TK-01 1 156012595 156012595 C A UBQLN4 Silent p.T412T 0.11 TCGA-MP-A4TK-01 1 156220781 156220781 G A SMG5 Silent p.L945L 0.08 TCGA-MP-A4TK-01 1 156821692 156821692 C A INSRR Missense_Mutation p.R310L 0.37 tolerated(0.11) benign(0.009) TCGA-MP-A4TK-01 1 158548912 158548912 G - OR10X1 Frame_Shift_Del p.H260Tfs*6 0.14 TCGA-MP-A4TK-01 1 160385651 160385651 G T VANGL2 Silent p.S8S 0.11 TCGA-MP-A4TK-01 1 160915034 160915034 A G ITLN2 Missense_Mutation p.C292R 0.20 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TK-01 1 170940947 170940947 C A MROH9 Missense_Mutation p.S180Y 0.13 deleterious(0.04) possibly_damaging(0.813) TCGA-MP-A4TK-01 1 170967428 170967428 G A MROH9 Intron 0.05 TCGA-MP-A4TK-01 1 170967593 170967593 G A MROH9 Intron 0.17 TCGA-MP-A4TK-01 1 170967596 170967596 G A MROH9 Intron 0.17 TCGA-MP-A4TK-01 1 171605353 171605353 C T MYOC Silent p.E409E 0.20 TCGA-MP-A4TK-01 1 17316433 17316433 G A ATP13A2 Silent p.S826S 0.31 TCGA-MP-A4TK-01 1 175048774 175048774 G T TNN Missense_Mutation p.G239C 0.25 deleterious(0) probably_damaging(0.94) TCGA-MP-A4TK-01 1 176563660 176563660 G T PAPPA2 Missense_Mutation p.G307V 0.09 deleterious(0) probably_damaging(1) TCGA-MP-A4TK-01 1 179520369 179520369 G C NPHS2 Missense_Mutation p.P364R 0.08 deleterious(0.04) possibly_damaging(0.764) TCGA-MP-A4TK-01 1 181453016 181453016 A T CACNA1E Missense_Mutation p.R46W 0.17 deleterious(0) possibly_damaging(0.675) TCGA-MP-A4TK-01 1 19166915 19166915 G A TAS1R2 Silent p.T566T 0.06 TCGA-MP-A4TK-01 1 19184092 19184092 C T TAS1R2 Missense_Mutation p.M72I 0.35 deleterious(0.04) benign(0.159) TCGA-MP-A4TK-01 1 197890471 197890471 G A LHX9 Missense_Mutation p.G139S 0.17 tolerated(0.1) possibly_damaging(0.74) TCGA-MP-A4TK-01 1 198721722 198721722 G T PTPRC Splice_Site p.X1111_splice 0.10 TCGA-MP-A4TK-01 1 201027590 201027590 A C CACNA1S Missense_Mutation p.F1185L 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-MP-A4TK-01 1 203276426 203276426 A T BTG2 Missense_Mutation p.I113F 0.07 deleterious(0.03) possibly_damaging(0.893) TCGA-MP-A4TK-01 1 203465316 203465316 C A OPTC Missense_Mutation p.D61E 0.09 deleterious(0.05) benign(0.156) TCGA-MP-A4TK-01 1 215987158 215987158 C A USH2A Missense_Mutation p.G3220V 0.11 benign(0.009) TCGA-MP-A4TK-01 1 216062138 216062138 C A USH2A Missense_Mutation p.W2618L 0.09 benign(0.138) TCGA-MP-A4TK-01 1 216062139 216062139 A T USH2A Missense_Mutation p.W2618R 0.09 benign(0.002) TCGA-MP-A4TK-01 1 216462736 216462736 C A USH2A Silent p.L619L 0.20 TCGA-MP-A4TK-01 1 223164061 223164061 G A DISP1 Missense_Mutation p.E212K 0.18 tolerated(0.23) benign(0.005) TCGA-MP-A4TK-01 1 228248100 228248100 C T WNT3A 3'UTR 0.11 TCGA-MP-A4TK-01 1 235577898 235577898 G C TBCE Missense_Mutation p.E112D 0.15 deleterious(0.04) benign(0.191) TCGA-MP-A4TK-01 1 236759145 236759145 C G HEATR1 Missense_Mutation p.S315T 0.13 tolerated(0.25) benign(0.008) TCGA-MP-A4TK-01 1 236759172 236759172 A G HEATR1 Missense_Mutation p.V306A 0.13 tolerated(0.09) benign(0.284) TCGA-MP-A4TK-01 1 240071141 240071141 C T CHRM3 Silent p.I130I 0.13 TCGA-MP-A4TK-01 1 24113774 24113774 C T PITHD1 Missense_Mutation p.H182Y 0.15 deleterious(0.04) probably_damaging(0.961) TCGA-MP-A4TK-01 1 247875339 247875339 G T OR6F1 Missense_Mutation p.T240K 0.25 deleterious(0) probably_damaging(0.997) TCGA-MP-A4TK-01 1 248059389 248059389 C A OR2W3 Silent p.P167P 0.17 TCGA-MP-A4TK-01 1 249142776 249142776 G T ZNF672 Missense_Mutation p.A435S 0.27 tolerated_low_confidence(0.14) benign(0.004) TCGA-MP-A4TK-01 1 34123565 34123565 G - CSMD2 Frame_Shift_Del p.S1437Afs*13 0.21 TCGA-MP-A4TK-01 1 38227598 38227598 C A EPHA10 Missense_Mutation p.R110L 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-MP-A4TK-01 1 38344085 38344085 A G INPP5B Intron 0.13 TCGA-MP-A4TK-01 1 40148235 40148235 C A HPCAL4 Missense_Mutation p.L183F 0.12 tolerated(0.11) probably_damaging(0.997) TCGA-MP-A4TK-01 1 53535774 53535774 G T PODN Missense_Mutation p.G131C 0.28 deleterious(0.03) benign(0.052) TCGA-MP-A4TK-01 1 57411516 57411516 G T C8B Missense_Mutation p.N361K 0.07 deleterious(0.01) benign(0.238) TCGA-MP-A4TK-01 1 64644310 64644310 G A ROR1 Silent p.S862S 0.22 TCGA-MP-A4TK-01 1 67155937 67155937 C G SGIP1 Missense_Mutation p.A503G 0.21 deleterious(0.01) probably_damaging(0.935) TCGA-MP-A4TK-01 1 68947889 68947889 C A DEPDC1 Missense_Mutation p.M534I 0.29 tolerated(0.4) benign(0.003) TCGA-MP-A4TK-01 1 75055640 75055640 C A C1orf173 Missense_Mutation p.R617S 0.11 tolerated(1) benign(0) TCGA-MP-A4TK-01 1 7848195 7848195 G A PER3 Missense_Mutation p.V161I 0.30 tolerated(0.1) benign(0.417) TCGA-MP-A4TK-01 1 89237233 89237233 G A PKN2 Missense_Mutation p.R251K 0.10 tolerated(0.52) benign(0.042) TCGA-MP-A4TK-01 1 90180335 90180336 - T LRRC8C Frame_Shift_Ins p.G737Wfs*26 0.09 TCGA-MP-A4TK-01 20 13107247 13107247 G T SPTLC3 Missense_Mutation p.D388Y 0.16 deleterious(0) probably_damaging(0.997) TCGA-MP-A4TK-01 20 21695213 21695213 C A PAX1 Silent p.P459P 0.38 TCGA-MP-A4TK-01 20 2384052 2384052 T C TGM6 Silent p.H333H 0.16 TCGA-MP-A4TK-01 20 2955860 2955860 G A PTPRA Splice_Site p.X139_splice 0.29 TCGA-MP-A4TK-01 20 31671270 31671270 C T BPIFB4 Silent p.H89H 0.18 TCGA-MP-A4TK-01 20 33981905 33981905 C A UQCC1 Missense_Mutation p.R40L 0.22 deleterious_low_confidence(0.05) benign(0.019) TCGA-MP-A4TK-01 20 35689507 35689507 C G RBL1 Missense_Mutation p.E417Q 0.21 deleterious(0.04) benign(0.297) TCGA-MP-A4TK-01 20 40739001 40739001 C A PTPRT Nonsense_Mutation p.E1076* 0.12 TCGA-MP-A4TK-01 20 44429749 44429749 C T DNTTIP1 Missense_Mutation p.P137S 0.12 tolerated(0.06) benign(0.014) TCGA-MP-A4TK-01 20 57611530 57611530 C A SLMO2 Missense_Mutation p.S154I 0.18 tolerated(0.12) benign(0.039) TCGA-MP-A4TK-01 20 61340911 61340911 C T NTSR1 Silent p.L118L 0.12 TCGA-MP-A4TK-01 20 9561436 9561436 C A PAK7 Missense_Mutation p.G116C 0.32 tolerated(0.05) possibly_damaging(0.682) TCGA-MP-A4TK-01 21 19737503 19737503 A T TMPRSS15 Missense_Mutation p.Y243N 0.13 deleterious(0) possibly_damaging(0.845) TCGA-MP-A4TK-01 21 31692204 31692204 G A KRTAP26-1 Silent p.T50T 0.12 TCGA-MP-A4TK-01 21 31863940 31863940 C A KRTAP19-3 3'UTR 0.15 TCGA-MP-A4TK-01 21 32554781 32554781 G T TIAM1 Silent p.A948A 0.12 TCGA-MP-A4TK-01 21 43706065 43706065 G T ABCG1 Missense_Mutation p.G312C 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-MP-A4TK-01 22 26743756 26743756 G A SEZ6L Missense_Mutation p.E762K 0.20 deleterious(0.01) possibly_damaging(0.889) TCGA-MP-A4TK-01 22 41513609 41513609 G T EP300 Silent p.A171A 0.16 TCGA-MP-A4TK-01 22 44564601 44564601 G T PARVB 3'UTR 0.32 TCGA-MP-A4TK-01 2 106498290 106498290 G T NCK2 Missense_Mutation p.G245C 0.14 deleterious(0) probably_damaging(1) TCGA-MP-A4TK-01 2 114004416 114004416 C A PAX8 Missense_Mutation p.D36Y 0.09 deleterious(0) probably_damaging(0.98) TCGA-MP-A4TK-01 2 130877938 130877938 C A POTEF Missense_Mutation p.D51Y 0.04 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-MP-A4TK-01 2 152222682 152222682 C A TNFAIP6 Silent p.I115I 0.08 TCGA-MP-A4TK-01 2 154800962 154800962 A G GALNT13 5'UTR 0.12 TCGA-MP-A4TK-01 2 159196813 159196813 G C CCDC148 Missense_Mutation p.H143D 0.20 tolerated(0.1) possibly_damaging(0.702) TCGA-MP-A4TK-01 2 160289280 160289280 C T BAZ2B Missense_Mutation p.D630N 0.12 possibly_damaging(0.539) TCGA-MP-A4TK-01 2 179613089 179613089 G C TTN Intron 0.05 TCGA-MP-A4TK-01 2 179636116 179636116 T C TTN Silent p.P2646P 0.27 TCGA-MP-A4TK-01 2 196883970 196883970 T A DNAH7 Missense_Mutation p.S265C 0.35 deleterious(0.05) benign(0.003) TCGA-MP-A4TK-01 2 200173611 200173611 G - SATB2 Frame_Shift_Del p.L538Sfs*8 0.22 TCGA-MP-A4TK-01 2 202469339 202469339 C T ALS2CR11 Missense_Mutation p.D105N 0.09 tolerated(0.05) possibly_damaging(0.638) TCGA-MP-A4TK-01 2 225661686 225661686 A C DOCK10 Missense_Mutation p.L1608V 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-MP-A4TK-01 2 228881127 228881127 G T SPHKAP Silent p.I1481I 0.04 TCGA-MP-A4TK-01 2 239160389 239160389 G A PER2 Missense_Mutation p.S1042L 0.07 tolerated(0.33) benign(0.169) TCGA-MP-A4TK-01 2 26505906 26505906 C A HADHB Missense_Mutation p.Q350K 0.11 deleterious(0.01) possibly_damaging(0.734) TCGA-MP-A4TK-01 2 27715271 27715271 A T FNDC4 3'UTR 0.07 TCGA-MP-A4TK-01 2 46739287 46739287 C A ATP6V1E2 Missense_Mutation p.Q188H 0.20 tolerated(0.21) benign(0.002) TCGA-MP-A4TK-01 2 54871600 54871600 C T SPTBN1 Silent p.A1382A 0.14 TCGA-MP-A4TK-01 2 56611472 56611472 G C CCDC85A Missense_Mutation p.Q548H 0.41 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-MP-A4TK-01 2 62065758 62065758 G C FAM161A Missense_Mutation p.Q556E 0.10 deleterious(0) probably_damaging(0.997) TCGA-MP-A4TK-01 2 73441463 73441463 G T SMYD5 Silent p.V23V 0.11 TCGA-MP-A4TK-01 2 74666725 74666725 C - RTKN Intron 0.23 TCGA-MP-A4TK-01 2 89326851 89326851 G A IGKV3-11 Silent p.A54A 0.19 TCGA-MP-A4TK-01 2 9568905 9568905 A G CPSF3 Missense_Mutation p.Q21R 0.09 deleterious(0.01) possibly_damaging(0.699) TCGA-MP-A4TK-01 2 96262151 96262151 T C TRIM43 Missense_Mutation p.C237R 0.21 tolerated(0.07) benign(0.133) TCGA-MP-A4TK-01 2 96873971 96873971 G A STARD7 Missense_Mutation p.R68C 0.22 deleterious(0) benign(0.005) TCGA-MP-A4TK-01 2 99438649 99438649 C A KIAA1211L Missense_Mutation p.R696M 0.26 deleterious(0) probably_damaging(0.984) TCGA-MP-A4TK-01 3 10188296 10188296 A G VHL Missense_Mutation p.I147V 0.08 tolerated(0.48) benign(0.108) TCGA-MP-A4TK-01 3 10320661 10320661 C A TATDN2 Silent p.L746L 0.09 TCGA-MP-A4TK-01 3 123512533 123512533 G A MYLK Silent p.F52F 0.21 TCGA-MP-A4TK-01 3 147128843 147128843 G C ZIC1 Missense_Mutation p.R315P 0.08 deleterious(0) probably_damaging(0.985) TCGA-MP-A4TK-01 3 148760062 148760062 C A HLTF Silent p.G696G 0.24 TCGA-MP-A4TK-01 3 148927139 148927139 C T CP Missense_Mutation p.D214N 0.09 deleterious(0.04) benign(0.329) TCGA-MP-A4TK-01 3 148927163 148927163 C T CP Missense_Mutation p.D206N 0.18 tolerated(0.38) benign(0.027) TCGA-MP-A4TK-01 3 167506947 167506947 G T SERPINI1 Missense_Mutation p.V11F 0.09 deleterious(0.02) benign(0.049) TCGA-MP-A4TK-01 3 182941210 182941210 A T MCF2L2 Missense_Mutation p.L742Q 0.17 deleterious(0) probably_damaging(1) TCGA-MP-A4TK-01 3 186449341 186449341 G T KNG1 Missense_Mutation p.G227V 0.28 deleterious(0.02) possibly_damaging(0.501) TCGA-MP-A4TK-01 3 19575166 19575166 G T KCNH8 Missense_Mutation p.G967W 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.467) TCGA-MP-A4TK-01 3 195960061 195960061 C G SLC51A Silent p.L338L 0.12 TCGA-MP-A4TK-01 3 21478501 21478501 C G ZNF385D Missense_Mutation p.A212P 0.10 deleterious(0.01) probably_damaging(0.995) TCGA-MP-A4TK-01 3 31661244 31661244 G C STT3B Missense_Mutation p.D417H 0.07 deleterious(0) probably_damaging(1) TCGA-MP-A4TK-01 3 31661314 31661314 G C STT3B Missense_Mutation p.R440T 0.05 tolerated(0.22) probably_damaging(1) TCGA-MP-A4TK-01 3 36880147 36880147 G A TRANK1 Missense_Mutation p.H1737Y 0.11 deleterious(0) possibly_damaging(0.491) TCGA-MP-A4TK-01 3 38938618 38938618 G A SCN11A Silent p.V707V 0.06 TCGA-MP-A4TK-01 3 40299767 40299767 G A MYRIP 3'UTR 0.12 TCGA-MP-A4TK-01 3 47894833 47894833 C A MAP4 Missense_Mutation p.G1091C 0.17 deleterious(0) probably_damaging(0.995) TCGA-MP-A4TK-01 3 48611943 48611943 G A COL7A1 Missense_Mutation p.P2145L 0.18 unknown(0) TCGA-MP-A4TK-01 3 49155487 49155487 G A USP19 Missense_Mutation p.S64L 0.12 tolerated_low_confidence(0.8) benign(0) TCGA-MP-A4TK-01 3 52825633 52825633 C T ITIH1 Silent p.L865L 0.14 TCGA-MP-A4TK-01 3 88205656 88205656 G T C3orf38 Silent p.P287P 0.25 TCGA-MP-A4TK-01 3 9880791 9880791 C T RPUSD3 Missense_Mutation p.M263I 0.32 tolerated(0.08) benign(0.001) TCGA-MP-A4TK-01 4 104116268 104116268 C T CENPE Intron 0.09 TCGA-MP-A4TK-01 4 109783673 109783673 C A COL25A1 Missense_Mutation p.G394V 0.26 deleterious(0) probably_damaging(1) TCGA-MP-A4TK-01 4 114203953 114203953 G T ANK2 Silent p.L668L 0.10 TCGA-MP-A4TK-01 4 114286286 114286286 C A ANK2 Silent p.I3660I 0.07 TCGA-MP-A4TK-01 4 123225987 123225987 G A KIAA1109 Missense_Mutation p.R3174K 0.11 benign(0.164) TCGA-MP-A4TK-01 4 156784795 156784795 T A ASIC5 Missense_Mutation p.H51L 0.14 tolerated(0.06) benign(0.105) TCGA-MP-A4TK-01 4 162306972 162306972 C G FSTL5 Missense_Mutation p.R824P 0.06 deleterious(0) probably_damaging(0.986) TCGA-MP-A4TK-01 4 164393388 164393388 C A TKTL2 Missense_Mutation p.R500L 0.22 tolerated(0.11) benign(0.11) TCGA-MP-A4TK-01 4 166976289 166976289 A G TLL1 Missense_Mutation p.N529S 0.07 tolerated(0.65) benign(0.003) TCGA-MP-A4TK-01 4 24534678 24534678 C A DHX15 Splice_Site p.X637_splice 0.22 TCGA-MP-A4TK-01 4 37848597 37848597 G T PGM2 Silent p.L351L 0.20 TCGA-MP-A4TK-01 4 38798662 38798662 C A TLR1 Silent p.V597V 0.37 TCGA-MP-A4TK-01 4 39851196 39851196 C G PDS5A Missense_Mutation p.E1055Q 0.09 tolerated(0.08) probably_damaging(0.991) TCGA-MP-A4TK-01 4 46930560 46930560 T A GABRA4 Missense_Mutation p.R449S 0.06 tolerated_low_confidence(0.19) possibly_damaging(0.472) TCGA-MP-A4TK-01 4 47685831 47685831 C A CORIN Missense_Mutation p.C313F 0.17 deleterious(0) probably_damaging(1) TCGA-MP-A4TK-01 4 66509147 66509147 T A EPHA5 Splice_Site p.X61_splice 0.20 TCGA-MP-A4TK-01 4 69343205 69343205 T A TMPRSS11E Missense_Mutation p.Y276N 0.12 tolerated(1) benign(0.371) TCGA-MP-A4TK-01 4 8584335 8584335 C A GPR78 Missense_Mutation p.T249N 0.17 deleterious(0.01) possibly_damaging(0.493) TCGA-MP-A4TK-01 4 88532074 88532074 C T DSPP Missense_Mutation p.T5I 0.10 benign(0.008) TCGA-MP-A4TK-01 4 88532075 88532075 A T DSPP Silent p.T5T 0.10 TCGA-MP-A4TK-01 4 90816139 90816139 T A MMRN1 Nonsense_Mutation p.L6* 0.23 TCGA-MP-A4TK-01 4 94693373 94693373 G T GRID2 Silent p.L916L 0.18 TCGA-MP-A4TK-01 4 96123960 96123960 G A UNC5C Silent p.I686I 0.12 TCGA-MP-A4TK-01 4 98480126 98480126 T C STPG2 3'UTR 0.12 TCGA-MP-A4TK-01 5 108714367 108714367 C A PJA2 Missense_Mutation p.S274I 0.20 tolerated(0.05) benign(0.016) TCGA-MP-A4TK-01 5 108714369 108714369 A G PJA2 Silent p.T273T 0.21 TCGA-MP-A4TK-01 5 11098763 11098763 A G CTNND2 Missense_Mutation p.L854P 0.10 deleterious(0) probably_damaging(1) TCGA-MP-A4TK-01 5 11397223 11397224 GG A CTNND2 Frame_Shift_Del p.L178Wfs*154 0.12 TCGA-MP-A4TK-01 5 128302195 128302195 G A SLC27A6 Nonsense_Mutation p.W122* 0.13 TCGA-MP-A4TK-01 5 140188117 140188117 A T PCDHA4 Missense_Mutation p.N449Y 0.14 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-MP-A4TK-01 5 140222982 140222982 G T PCDHA8 Silent p.A692A 0.36 TCGA-MP-A4TK-01 5 140250221 140250221 G T PCDHA11 Silent p.A511A 0.14 TCGA-MP-A4TK-01 5 140573164 140573164 C A PCDHB10 Missense_Mutation p.L347M 0.14 deleterious_low_confidence(0) benign(0.169) TCGA-MP-A4TK-01 5 140616047 140616047 G T PCDHB18 RNA 0.11 TCGA-MP-A4TK-01 5 140794245 140794245 G A PCDHGA10 Silent p.Q501Q 0.17 TCGA-MP-A4TK-01 5 148712379 148712379 G T AFAP1L1 Missense_Mutation p.Q699H 0.29 deleterious(0.01) benign(0.005) TCGA-MP-A4TK-01 5 150701674 150701674 G T SLC36A2 Silent p.S371S 0.15 TCGA-MP-A4TK-01 5 154393370 154393370 G T KIF4B 5'UTR 0.25 TCGA-MP-A4TK-01 5 154393371 154393371 G T KIF4B 5'UTR 0.26 TCGA-MP-A4TK-01 5 156997940 156997940 G T ADAM19 Missense_Mutation p.P48H 0.10 deleterious(0) probably_damaging(0.992) TCGA-MP-A4TK-01 5 15937169 15937169 C A FBXL7 Silent p.A450A 0.20 TCGA-MP-A4TK-01 5 161522540 161522540 G T GABRG2 Missense_Mutation p.S100I 0.18 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TK-01 5 161576111 161576111 C A GABRG2 Intron 0.21 TCGA-MP-A4TK-01 5 169724620 169724620 G C LCP2 5'UTR 0.19 TCGA-MP-A4TK-01 5 175525555 175525555 T C FAM153B Silent p.V100V 0.07 TCGA-MP-A4TK-01 5 176079834 176079834 A T TSPAN17 Missense_Mutation p.N126Y 0.13 tolerated(0.76) benign(0.03) TCGA-MP-A4TK-01 5 176311060 176311060 C - HK3 Frame_Shift_Del p.E645Kfs*11 0.16 TCGA-MP-A4TK-01 5 179201689 179201689 G T MAML1 Silent p.G954G 0.17 TCGA-MP-A4TK-01 5 19839116 19839116 C G CDH18 5'UTR 0.15 TCGA-MP-A4TK-01 5 21752278 21752278 T - CDH12 Frame_Shift_Del p.D652Tfs*27 0.12 TCGA-MP-A4TK-01 5 24537552 24537552 C A CDH10 Missense_Mutation p.D155Y 0.19 deleterious(0) probably_damaging(0.993) TCGA-MP-A4TK-01 5 33683177 33683177 A - ADAMTS12 Frame_Shift_Del p.I287Mfs*22 0.16 TCGA-MP-A4TK-01 5 5186342 5186342 A T ADAMTS16 Missense_Mutation p.Y314F 0.39 deleterious(0.03) probably_damaging(0.979) TCGA-MP-A4TK-01 5 54646807 54646807 C T SKIV2L2 Missense_Mutation p.P461S 0.08 deleterious(0) probably_damaging(1) TCGA-MP-A4TK-01 5 73072468 73072468 G T ARHGEF28 Missense_Mutation p.A263S 0.12 tolerated(0.94) benign(0.016) TCGA-MP-A4TK-01 5 82808082 82808082 C A VCAN Missense_Mutation p.S303R 0.13 deleterious(0) probably_damaging(0.999) TCGA-MP-A4TK-01 6 100368858 100368858 C G MCHR2 Missense_Mutation p.K327N 0.11 tolerated(0.16) benign(0.002) TCGA-MP-A4TK-01 6 100838764 100838764 G A SIM1 Silent p.L592L 0.21 TCGA-MP-A4TK-01 6 25770378 25770378 C A SLC17A4 Silent p.P127P 0.22 TCGA-MP-A4TK-01 6 35544904 35544926 AGCACTTTCTCAAAGTCACCCTT GG FKBP5 In_Frame_Del p.K371_L378delinsP 0.14 TCGA-MP-A4TK-01 6 41162539 41162547 GTGTGAAAG - TREML2 In_Frame_Del p.P134_T136del 0.25 TCGA-MP-A4TK-01 6 42236006 42236006 C A TRERF1 Silent p.L441L 0.30 TCGA-MP-A4TK-01 6 42986281 42986281 G C KLHDC3 Silent p.R240R 0.32 TCGA-MP-A4TK-01 6 43484793 43484793 G T POLR1C 5'UTR 0.07 TCGA-MP-A4TK-01 6 47976436 47976436 C A PTCHD4 Missense_Mutation p.G281W 0.15 deleterious(0) probably_damaging(1) TCGA-MP-A4TK-01 6 51524392 51524392 C A PKHD1 Missense_Mutation p.G3511V 0.12 tolerated(0.09) benign(0.372) TCGA-MP-A4TK-01 6 51947264 51947264 C A PKHD1 Silent p.V69V 0.21 TCGA-MP-A4TK-01 6 52103567 52103567 C A IL17F Missense_Mutation p.R72L 0.36 tolerated(0.71) benign(0.024) TCGA-MP-A4TK-01 6 52878678 52878678 C A ICK Missense_Mutation p.G312C 0.07 tolerated(0.07) benign(0.345) TCGA-MP-A4TK-01 6 54254845 54254845 T A TINAG 3'UTR 0.22 TCGA-MP-A4TK-01 6 54805498 54805498 C A FAM83B Missense_Mutation p.P577T 0.22 tolerated(0.13) benign(0.019) TCGA-MP-A4TK-01 6 55119943 55119943 G T HCRTR2 Missense_Mutation p.V138L 0.17 deleterious(0.01) probably_damaging(0.93) TCGA-MP-A4TK-01 6 74183372 74183372 A C MTO1 Missense_Mutation p.I274L 0.17 tolerated(0.41) benign(0.065) TCGA-MP-A4TK-01 6 75848594 75848594 C A COL12A1 Missense_Mutation p.D1681Y 0.25 probably_damaging(1) TCGA-MP-A4TK-01 6 88855026 88855026 T G CNR1 5'UTR 0.11 TCGA-MP-A4TK-01 6 94120701 94120701 C T EPHA7 Missense_Mutation p.G117E 0.10 deleterious(0) probably_damaging(0.99) TCGA-MP-A4TK-01 7 100682446 100682446 C A MUC17 Silent p.T2583T 0.09 TCGA-MP-A4TK-01 7 11022326 11022326 C T PHF14 Missense_Mutation p.S147F 0.21 deleterious_low_confidence(0.02) unknown(0) TCGA-MP-A4TK-01 7 123516863 123516863 C A HYAL4 Missense_Mutation p.A367D 0.16 deleterious(0.02) benign(0.09) TCGA-MP-A4TK-01 7 127014982 127014982 T C ZNF800 Missense_Mutation p.I136M 0.09 deleterious(0) probably_damaging(0.986) TCGA-MP-A4TK-01 7 129962562 129962562 C A CPA4 3'UTR 0.18 TCGA-MP-A4TK-01 7 136699975 136699975 G T CHRM2 Missense_Mutation p.R121S 0.18 deleterious(0) probably_damaging(1) TCGA-MP-A4TK-01 7 138601707 138601707 C A KIAA1549 Missense_Mutation p.G889C 0.23 deleterious(0.02) possibly_damaging(0.764) TCGA-MP-A4TK-01 7 138764582 138764582 G A ZC3HAV1 Nonsense_Mutation p.Q369* 0.17 TCGA-MP-A4TK-01 7 139756777 139756777 C T PARP12 Silent p.L213L 0.16 TCGA-MP-A4TK-01 7 142566381 142566381 G A EPHB6 Missense_Mutation p.G724S 0.21 deleterious(0) probably_damaging(0.981) TCGA-MP-A4TK-01 7 144097381 144097381 A C NOBOX Missense_Mutation p.I290R 0.16 deleterious(0) probably_damaging(0.964) TCGA-MP-A4TK-01 7 1535125 1535125 C A INTS1 Missense_Mutation p.W592C 0.27 deleterious(0) probably_damaging(0.935) TCGA-MP-A4TK-01 7 156743080 156743080 G C NOM1 Missense_Mutation p.D217H 0.09 deleterious(0) probably_damaging(0.953) TCGA-MP-A4TK-01 7 28997265 28997265 A T AC005013.5 5'Flank 0.25 TCGA-MP-A4TK-01 7 42949554 42949554 C G C7orf25 Missense_Mutation p.D374H 0.14 deleterious(0.02) possibly_damaging(0.735) TCGA-MP-A4TK-01 7 50512969 50512969 C A FIGNL1 Nonsense_Mutation p.G673* 0.22 TCGA-MP-A4TK-01 7 70853281 70853281 G A WBSCR17 Silent p.V161V 0.12 TCGA-MP-A4TK-01 7 75511472 75511472 G T RHBDD2 Silent p.P168P 0.21 TCGA-MP-A4TK-01 7 94185027 94185027 G T CASD1 Missense_Mutation p.G784V 0.07 tolerated(0.98) benign(0.008) TCGA-MP-A4TK-01 7 96747029 96747029 G T ACN9 5'UTR 0.33 TCGA-MP-A4TK-01 7 99521172 99521172 G T GJC3 Missense_Mutation p.A279D 0.09 deleterious_low_confidence(0) benign(0.1) TCGA-MP-A4TK-01 7 99630947 99630947 G T ZKSCAN1 Missense_Mutation p.E273D 0.13 tolerated(0.21) benign(0.014) TCGA-MP-A4TK-01 8 113304771 113304771 C A CSMD3 Missense_Mutation p.C2928F 0.17 deleterious(0.05) probably_damaging(0.999) TCGA-MP-A4TK-01 8 125343017 125343017 T A TMEM65 Silent p.P107P 0.23 TCGA-MP-A4TK-01 8 145095506 145095506 C A SPATC1 Missense_Mutation p.D268E 0.19 tolerated(0.22) benign(0.009) TCGA-MP-A4TK-01 8 145737669 145737669 C G RECQL4 Missense_Mutation p.E1032Q 0.11 deleterious(0.04) benign(0.015) TCGA-MP-A4TK-01 8 20067030 20067030 G T ATP6V1B2 Missense_Mutation p.K93N 0.11 tolerated(0.06) possibly_damaging(0.776) TCGA-MP-A4TK-01 8 2886890 2886890 G C CSMD1 Missense_Mutation p.C2602W 0.45 probably_damaging(0.999) TCGA-MP-A4TK-01 8 37602261 37602261 G A ERLIN2 Intron 0.14 TCGA-MP-A4TK-01 8 41470440 41470440 A C AGPAT6 Missense_Mutation p.E291A 0.26 deleterious(0) probably_damaging(0.989) TCGA-MP-A4TK-01 8 72755860 72755860 C G RP11-383H13.1 Missense_Mutation p.P75R 0.17 unknown(0) TCGA-MP-A4TK-01 8 77763747 77763747 G A ZFHX4 Silent p.T1530T 0.33 TCGA-MP-A4TK-01 8 82607048 82607048 G T SLC10A5 Silent p.R54R 0.20 TCGA-MP-A4TK-01 8 93003869 93003869 A T RUNX1T1 Missense_Mutation p.M341K 0.24 tolerated(0.46) benign(0.002) TCGA-MP-A4TK-01 8 94722018 94722018 G C FAM92A1 Missense_Mutation p.R153T 0.12 deleterious(0) possibly_damaging(0.827) TCGA-MP-A4TK-01 9 125289254 125289254 C T OR1N1 Missense_Mutation p.D107N 0.10 tolerated(0.15) possibly_damaging(0.769) TCGA-MP-A4TK-01 9 129928387 129928387 A G RALGPS1 Missense_Mutation p.Y217C 0.13 deleterious(0) probably_damaging(0.994) TCGA-MP-A4TK-01 9 133498163 133498163 G C FUBP3 Missense_Mutation p.Q280H 0.11 deleterious(0) probably_damaging(0.998) TCGA-MP-A4TK-01 9 140082025 140082025 C T ANAPC2 Silent p.L216L 0.13 TCGA-MP-A4TK-01 9 35092168 35092168 G T PIGO Silent p.A572A 0.12 TCGA-MP-A4TK-01 9 43624585 43624585 A T SPATA31A6 3'UTR 0.17 TCGA-MP-A4TK-01 9 74360076 74360076 G A TMEM2 Nonsense_Mutation p.Q298* 0.13 TCGA-MP-A4TK-01 9 79321351 79321351 C T PRUNE2 Missense_Mutation p.D1947N 0.09 tolerated(0.56) benign(0.014) TCGA-MP-A4TK-01 9 79441495 79441495 C T PRUNE2 Splice_Site p.X221_splice 0.05 TCGA-MP-A4TK-01 9 95236999 95236999 C T ASPN Missense_Mutation p.E61K 0.28 tolerated(0.41) benign(0.002) TCGA-MP-A4TK-01 X 108631806 108631806 C G GUCY2F Missense_Mutation p.M956I 0.16 deleterious(0) benign(0.055) TCGA-MP-A4TK-01 X 117043634 117043634 C T KLHL13 Silent p.R335R 0.14 TCGA-MP-A4TK-01 X 118540465 118540465 G A SLC25A43 Silent p.Q106Q 0.09 TCGA-MP-A4TK-01 X 127185278 127185278 C A ACTRT1 Missense_Mutation p.G303V 0.06 deleterious(0) probably_damaging(0.993) TCGA-MP-A4TK-01 X 127185279 127185279 C A ACTRT1 Missense_Mutation p.G303C 0.06 deleterious(0) probably_damaging(0.995) TCGA-MP-A4TK-01 X 129546815 129546815 G T RBMX2 Missense_Mutation p.R321L 0.15 deleterious_low_confidence(0.02) unknown(0) TCGA-MP-A4TK-01 X 134683590 134683590 C A DDX26B Missense_Mutation p.P256T 0.13 tolerated(0.17) benign(0.001) TCGA-MP-A4TK-01 X 135292129 135292129 G A FHL1 3'UTR 0.12 TCGA-MP-A4TK-01 X 135427727 135427727 C A GPR112 Missense_Mutation p.T621N 0.06 deleterious(0.01) possibly_damaging(0.543) TCGA-MP-A4TK-01 X 139587104 139587104 C A SOX3 Missense_Mutation p.S41I 0.33 deleterious_low_confidence(0) benign(0.058) TCGA-MP-A4TK-01 X 140786601 140786601 G C SPANXD 5'UTR 0.08 TCGA-MP-A4TK-01 X 145078767 145078767 G T MIR892B RNA 0.20 TCGA-MP-A4TK-01 X 148048601 148048601 T A AFF2 Missense_Mutation p.F1065L 0.07 tolerated(0.09) benign(0.225) TCGA-MP-A4TK-01 X 150348992 150348992 C T GPR50 Missense_Mutation p.R313W 0.14 tolerated(0.17) benign(0.007) TCGA-MP-A4TK-01 X 23018372 23018372 C G DDX53 Nonsense_Mutation p.Y66* 0.13 TCGA-MP-A4TK-01 X 3240525 3240525 T C MXRA5 Silent p.L1067L 0.17 TCGA-MP-A4TK-01 X 53457659 53457659 C T RIBC1 Nonsense_Mutation p.Q327* 0.17 TCGA-MP-A4TK-01 X 54012259 54012259 C A PHF8 Missense_Mutation p.A743S 0.21 tolerated(0.81) benign(0.012) TCGA-MP-A4TK-01 X 57146452 57146452 C A SPIN2B Missense_Mutation p.G204V 0.19 tolerated(0.18) benign(0.007) TCGA-MP-A4TK-01 X 65413397 65413397 G T HEPH Missense_Mutation p.W483L 0.09 tolerated(0.72) possibly_damaging(0.561) TCGA-MP-A4TK-01 X 69478547 69478547 C A P2RY4 Missense_Mutation p.G310W 0.13 deleterious(0) probably_damaging(0.997) TCGA-MP-A4TK-01 X 77912897 77912897 T A ZCCHC5 Missense_Mutation p.T341S 0.24 tolerated(0.13) benign(0.054) TCGA-MP-A4TK-01 X 83599266 83599266 C A HDX Missense_Mutation p.S551I 0.12 tolerated(0.28) probably_damaging(0.915) TCGA-MP-A4TK-01 X 90691533 90691533 G T PABPC5 Missense_Mutation p.K319N 0.10 deleterious(0) possibly_damaging(0.484) TCGA-MP-A5C7-01 10 105785591 105785591 T C SLK 3'UTR 0.26 TCGA-MP-A5C7-01 10 88259733 88259733 C T WAPAL Missense_Mutation p.D423N 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.773) TCGA-MP-A5C7-01 10 93390557 93390557 C A PPP1R3C Missense_Mutation p.R27S 0.29 tolerated(0.12) benign(0.005) TCGA-MP-A5C7-01 11 124617482 124617482 C T VSIG2 Silent p.S311S 0.12 TCGA-MP-A5C7-01 11 55371650 55371650 G A OR4C11 Missense_Mutation p.A67V 0.35 tolerated(0.42) benign(0.033) TCGA-MP-A5C7-01 11 55579617 55579617 C A OR5L1 Silent p.I225I 0.52 TCGA-MP-A5C7-01 11 6023879 6023879 G T OR56A4 Missense_Mutation p.S167Y 0.44 deleterious(0) probably_damaging(0.985) TCGA-MP-A5C7-01 11 6477672 6477672 C T TRIM3 Silent p.P428P 0.35 TCGA-MP-A5C7-01 11 68154038 68154038 G T LRP5 Missense_Mutation p.D424Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-MP-A5C7-01 11 74800041 74800041 C A OR2AT4 Missense_Mutation p.A240S 0.41 tolerated(1) benign(0.006) TCGA-MP-A5C7-01 11 869929 869929 G A CHID1 Missense_Mutation p.R396W 0.32 deleterious(0.01) possibly_damaging(0.559) TCGA-MP-A5C7-01 12 110983717 110983717 G A PPTC7 Silent p.P190P 0.34 TCGA-MP-A5C7-01 12 14959334 14959334 G T SMCO3 Missense_Mutation p.T94N 0.37 tolerated(0.55) possibly_damaging(0.742) TCGA-MP-A5C7-01 12 32137642 32137642 A G KIAA1551 Silent p.L1251L 0.43 TCGA-MP-A5C7-01 12 40728853 40728853 G T LRRK2 Nonsense_Mutation p.E1948* 0.36 TCGA-MP-A5C7-01 12 52777428 52777429 - G KRT84 Frame_Shift_Ins p.R234Pfs*5 0.21 TCGA-MP-A5C7-01 12 8757414 8757414 G A AICDA Missense_Mutation p.R178C 0.45 deleterious(0.02) probably_damaging(0.992) TCGA-MP-A5C7-01 13 36747942 36747942 T C SOHLH2 Missense_Mutation p.N373S 0.38 tolerated(0.29) benign(0.007) TCGA-MP-A5C7-01 13 39622123 39622123 A - NHLRC3 3'UTR 0.23 TCGA-MP-A5C7-01 14 106237030 106237030 T G IGHG3 Missense_Mutation p.T108P 0.41 tolerated(0.64) benign(0) TCGA-MP-A5C7-01 14 62187197 62187197 C - HIF1A Frame_Shift_Del p.P69Hfs*6 0.26 TCGA-MP-A5C7-01 14 79423698 79423698 G T NRXN3 Missense_Mutation p.A424S 0.32 tolerated(0.1) probably_damaging(0.957) TCGA-MP-A5C7-01 15 22332776 22332776 G T RP11-69H14.6 Intron 0.27 TCGA-MP-A5C7-01 15 54803996 54803997 - A UNC13C Frame_Shift_Ins p.M1811Nfs*3 0.50 TCGA-MP-A5C7-01 15 72502814 72502814 A T PKM Missense_Mutation p.H84Q 0.29 deleterious(0.02) probably_damaging(0.937) TCGA-MP-A5C7-01 16 19873158 19873158 C T GPRC5B Splice_Site p.X389_splice 0.47 TCGA-MP-A5C7-01 16 61689414 61689414 G A CDH8 Silent p.G622G 0.49 TCGA-MP-A5C7-01 17 3119132 3119132 T C OR1A1 Missense_Mutation p.F73S 0.45 deleterious(0.01) benign(0.082) TCGA-MP-A5C7-01 17 3119133 3119133 C A OR1A1 Missense_Mutation p.F73L 0.45 tolerated(0.09) benign(0.012) TCGA-MP-A5C7-01 17 37347768 37347768 C T CACNB1 Missense_Mutation p.E84K 0.41 deleterious(0) probably_damaging(0.998) TCGA-MP-A5C7-01 17 76122914 76122914 G A TMC6 5'UTR 0.62 TCGA-MP-A5C7-01 17 78931486 78931486 C T RPTOR Missense_Mutation p.R1145W 0.40 deleterious(0) probably_damaging(0.999) TCGA-MP-A5C7-01 18 2892185 2892185 C T EMILIN2 Missense_Mutation p.A687V 0.39 tolerated(0.15) benign(0.002) TCGA-MP-A5C7-01 18 57103121 57103121 G A CCBE1 3'UTR 0.35 TCGA-MP-A5C7-01 19 10602543 10602543 G C KEAP1 Nonsense_Mutation p.Y345* 0.79 TCGA-MP-A5C7-01 19 11942769 11942769 G C ZNF440 Missense_Mutation p.E260Q 0.72 tolerated(0.68) benign(0.02) TCGA-MP-A5C7-01 19 49935887 49935887 G A SLC17A7 Missense_Mutation p.P347S 0.86 deleterious(0) probably_damaging(0.912) TCGA-MP-A5C7-01 19 58117187 58117187 A C ZNF530 Silent p.P98P 0.08 TCGA-MP-A5C7-01 1 1152878 1152878 G C SDF4 3'UTR 0.47 TCGA-MP-A5C7-01 1 152188249 152188249 G T HRNR Silent p.G1952G 0.09 TCGA-MP-A5C7-01 1 152882791 152882791 T G IVL Missense_Mutation p.L173R 0.13 deleterious(0.05) unknown(0) TCGA-MP-A5C7-01 1 156280743 156280744 GA - CCT3 Frame_Shift_Del p.R467Gfs*9 0.18 TCGA-MP-A5C7-01 1 16528913 16528913 C A ARHGEF19 Silent p.T688T 0.12 TCGA-MP-A5C7-01 1 175335202 175335202 G T TNR Missense_Mutation p.A709D 0.21 tolerated(0.09) probably_damaging(0.999) TCGA-MP-A5C7-01 1 177133540 177133540 G A ASTN1 Silent p.Y91Y 0.28 TCGA-MP-A5C7-01 1 180959233 180959233 C T STX6 Missense_Mutation p.D126N 0.16 tolerated(1) benign(0.103) TCGA-MP-A5C7-01 1 190067483 190067483 G T BRINP3 Silent p.R656R 0.22 TCGA-MP-A5C7-01 1 200959157 200959157 G C KIF21B Silent p.S1015S 0.15 TCGA-MP-A5C7-01 1 202103599 202103599 C T ARL8A Missense_Mutation p.S186N 0.20 tolerated_low_confidence(0.08) benign(0.006) TCGA-MP-A5C7-01 1 215990521 215990521 A G USH2A Missense_Mutation p.W3130R 0.29 probably_damaging(1) TCGA-MP-A5C7-01 1 225592188 225592188 T C LBR Silent p.L535L 0.18 TCGA-MP-A5C7-01 1 75055724 75055724 A G C1orf173 Silent p.P589P 0.44 TCGA-MP-A5C7-01 21 34950583 34950583 C T DONSON 3'UTR 0.23 TCGA-MP-A5C7-01 22 16449713 16449713 C A OR11H1 Missense_Mutation p.G31V 0.25 deleterious(0) possibly_damaging(0.54) TCGA-MP-A5C7-01 22 37209741 37209741 T A PVALB Missense_Mutation p.M85L 0.42 deleterious(0.02) benign(0.005) TCGA-MP-A5C7-01 22 50719902 50719902 C A PLXNB2 Silent p.V1183V 0.27 TCGA-MP-A5C7-01 2 135744717 135744717 C T MAP3K19 Silent p.P575P 0.27 TCGA-MP-A5C7-01 2 138208578 138208578 G T THSD7B Silent p.L1041L 0.58 TCGA-MP-A5C7-01 2 166226649 166226649 T C SCN2A Missense_Mutation p.I1230T 0.45 deleterious(0) probably_damaging(0.999) TCGA-MP-A5C7-01 2 202900126 202900126 C T FZD7 Silent p.F252F 0.46 TCGA-MP-A5C7-01 2 230231612 230231612 G A DNER Silent p.A693A 0.46 TCGA-MP-A5C7-01 2 233527526 233527526 G T EFHD1 Missense_Mutation p.R106L 0.33 deleterious(0.01) possibly_damaging(0.672) TCGA-MP-A5C7-01 2 29449860 29449860 G T ALK Missense_Mutation p.P999T 0.39 tolerated(0.31) benign(0.298) TCGA-MP-A5C7-01 2 48688354 48688354 T C PPP1R21 Missense_Mutation p.V226A 0.08 deleterious(0) benign(0.123) TCGA-MP-A5C7-01 2 71415554 71415554 G A PAIP2B 3'UTR 0.40 TCGA-MP-A5C7-01 2 97856868 97856868 C G ANKRD36 Missense_Mutation p.S766C 0.38 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-MP-A5C7-01 3 191861870 191861870 T C FGF12 Silent p.Q220Q 0.38 TCGA-MP-A5C7-01 3 197348670 197348670 G T AC024560.3 RNA 0.40 TCGA-MP-A5C7-01 3 52380539 52380539 C A DNAH1 Missense_Mutation p.R570S 0.35 benign(0.158) TCGA-MP-A5C7-01 4 101947148 101947148 A C PPP3CA Missense_Mutation p.N480K 0.42 deleterious(0) possibly_damaging(0.589) TCGA-MP-A5C7-01 4 189060940 189060940 C A TRIML1 Missense_Mutation p.S76R 0.41 tolerated(0.22) benign(0.059) TCGA-MP-A5C7-01 4 85630181 85630181 T C WDFY3 Missense_Mutation p.R2700G 0.44 deleterious(0) probably_damaging(0.988) TCGA-MP-A5C7-01 4 96106276 96106276 G T UNC5C Silent p.G736G 0.40 TCGA-MP-A5C7-01 5 112170781 112170782 - A APC Frame_Shift_Ins p.N627Kfs*7 0.37 TCGA-MP-A5C7-01 5 133996938 133996938 A G SEC24A Missense_Mutation p.Y76C 0.73 deleterious_low_confidence(0.02) benign(0.376) TCGA-MP-A5C7-01 5 140871239 140871239 G A PCDHGC5 Missense_Mutation p.R811H 0.11 tolerated(0.12) benign(0.001) TCGA-MP-A5C7-01 5 146077624 146077624 C T PPP2R2B Silent p.K87K 0.07 TCGA-MP-A5C7-01 5 34936260 34936260 G A DNAJC21 Silent p.T109T 0.29 TCGA-MP-A5C7-01 5 38950137 38950137 C T RICTOR Silent p.T1271T 0.43 TCGA-MP-A5C7-01 6 143081594 143081594 G A HIVEP2 Missense_Mutation p.S1944F 0.62 deleterious(0.03) probably_damaging(0.998) TCGA-MP-A5C7-01 6 17804715 17804715 A G KIF13A Silent p.G777G 0.13 TCGA-MP-A5C7-01 7 101944511 101944511 G A SH2B2 Missense_Mutation p.R269H 0.33 deleterious(0.03) benign(0.032) TCGA-MP-A5C7-01 7 128486043 128486043 G C FLNC Splice_Site p.X1264_splice 0.33 TCGA-MP-A5C7-01 7 143827139 143827139 G T OR2A14 3'UTR 0.40 TCGA-MP-A5C7-01 7 23338986 23338986 C T MALSU1 Silent p.G5G 0.44 TCGA-MP-A5C7-01 7 87079361 87079361 T A ABCB4 Silent p.A252A 0.46 TCGA-MP-A5C7-01 7 88965324 88965324 C T ZNF804B Missense_Mutation p.H1010Y 0.28 deleterious(0) benign(0.013) TCGA-MP-A5C7-01 8 121290443 121290443 A G COL14A1 Missense_Mutation p.I1103V 0.50 tolerated(0.18) benign(0.07) TCGA-MP-A5C7-01 8 24324450 24324450 C A ADAM7 Silent p.T176T 0.44 TCGA-MP-A5C7-01 9 131007027 131007027 C A DNM1 Intron 0.32 TCGA-MP-A5C7-01 9 132689528 132689528 A G FNBP1 Silent p.I245I 0.37 TCGA-MP-A5C7-01 9 5922122 5922122 C T KIAA2026 Missense_Mutation p.V1292I 0.58 deleterious(0) probably_damaging(0.971) TCGA-MP-A5C7-01 X 100656568 100656568 A G RPL36A-HNRNPH2 Intron 0.44 TCGA-MP-A5C7-01 X 125299867 125299867 G T DCAF12L2 Missense_Mutation p.P14H 0.33 deleterious_low_confidence(0) benign(0.255) TCGA-MP-A5C7-01 X 23018147 23018147 C A DDX53 5'UTR 0.50 TCGA-MP-A5C7-01 X 24746020 24746020 G T POLA1 Missense_Mutation p.K545N 0.42 deleterious(0) possibly_damaging(0.821) TCGA-MP-A5C7-01 X 30254629 30254629 G A MAGEB3 Silent p.R196R 0.07 TCGA-MP-A5C7-01 X 54956904 54956904 C T TRO Silent p.F1249F 0.09 TCGA-MP-A5C7-01 X 67731778 67731778 T C YIPF6 Missense_Mutation p.F49L 0.40 tolerated(0.33) benign(0) TCGA-MP-A5C7-01 X 70348241 70348241 C A MED12 Missense_Mutation p.S1102Y 0.26 probably_damaging(0.999) TCGA-MP-A5C7-01 X 70460705 70460705 T A ZMYM3 3'UTR 0.46 TCGA-MP-A5C7-01 X 72673397 72673397 C T CDX4 Missense_Mutation p.H183Y 0.27 deleterious(0) possibly_damaging(0.793) TCGA-NJ-A4YF-01 10 102566190 102566190 T C PAX2 Missense_Mutation p.V230A 0.24 tolerated(0.28) benign(0.045) TCGA-NJ-A4YF-01 10 116919879 116919879 T C ATRNL1 Missense_Mutation p.V303A 0.13 tolerated(0.11) benign(0.05) TCGA-NJ-A4YF-01 10 124092011 124092011 G A BTBD16 Missense_Mutation p.G383R 0.65 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 10 15614353 15614353 G T ITGA8 Missense_Mutation p.P832T 0.47 deleterious(0.01) probably_damaging(1) TCGA-NJ-A4YF-01 10 17362943 17362943 G T ST8SIA6 Missense_Mutation p.S377R 0.56 tolerated(0.36) benign(0.008) TCGA-NJ-A4YF-01 10 17432531 17432531 C A ST8SIA6 Missense_Mutation p.G97W 0.09 deleterious(0.01) possibly_damaging(0.711) TCGA-NJ-A4YF-01 10 22678195 22678195 T C SPAG6 Missense_Mutation p.V320A 0.58 deleterious(0) benign(0.064) TCGA-NJ-A4YF-01 10 30318174 30318174 G C KIAA1462 Missense_Mutation p.H301Q 0.17 tolerated(0.08) benign(0.426) TCGA-NJ-A4YF-01 10 45799232 45799232 G T OR13A1 Missense_Mutation p.N213K 0.14 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YF-01 10 47158850 47158850 C G ANXA8L1 Missense_Mutation p.G324A 0.36 deleterious(0.02) probably_damaging(0.997) TCGA-NJ-A4YF-01 10 55566771 55566771 A T PCDH15 Missense_Mutation p.S1538R 0.53 tolerated_low_confidence(0.05) benign(0.001) TCGA-NJ-A4YF-01 10 55582223 55582223 G T PCDH15 Missense_Mutation p.P1757T 0.23 tolerated_low_confidence(0.92) unknown(0) TCGA-NJ-A4YF-01 10 71176137 71176137 A G TACR2 5'UTR 0.48 TCGA-NJ-A4YF-01 10 74167778 74167778 C G MICU1 Missense_Mutation p.E363D 0.50 tolerated(0.78) benign(0.11) TCGA-NJ-A4YF-01 10 79753002 79753002 C T POLR3A Missense_Mutation p.G914R 0.55 deleterious(0) probably_damaging(0.91) TCGA-NJ-A4YF-01 10 85992159 85992159 A C LRIT1 Missense_Mutation p.F466V 0.55 deleterious(0) probably_damaging(0.911) TCGA-NJ-A4YF-01 10 87379741 87379741 T A GRID1 Missense_Mutation p.Y748F 0.54 deleterious(0) benign(0.299) TCGA-NJ-A4YF-01 10 88213072 88213072 C T WAPAL Missense_Mutation p.G952R 0.17 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 10 94264645 94264645 G C IDE Missense_Mutation p.L446V 0.27 tolerated(0.05) benign(0.006) TCGA-NJ-A4YF-01 10 95720270 95720270 A G PIPSL RNA 0.15 TCGA-NJ-A4YF-01 11 100170000 100170000 C A CNTN5 Missense_Mutation p.A831D 0.11 deleterious(0) probably_damaging(0.975) TCGA-NJ-A4YF-01 11 102269561 102269561 C A TMEM123 3'UTR 0.46 TCGA-NJ-A4YF-01 11 103907790 103907790 G T DDI1 Silent p.V80V 0.28 TCGA-NJ-A4YF-01 11 105924081 105924081 G C KBTBD3 Nonsense_Mutation p.Y445* 0.30 TCGA-NJ-A4YF-01 11 108547965 108547965 G T DDX10 Nonsense_Mutation p.G178* 0.36 TCGA-NJ-A4YF-01 11 113803667 113803667 T C HTR3B Missense_Mutation p.V183A 0.50 deleterious(0) possibly_damaging(0.747) TCGA-NJ-A4YF-01 11 116633488 116633488 C A BUD13 Missense_Mutation p.D273Y 0.68 deleterious(0) possibly_damaging(0.634) TCGA-NJ-A4YF-01 11 128677124 128677124 G T FLI1 Silent p.R257R 0.27 TCGA-NJ-A4YF-01 11 130286092 130286092 G T ADAMTS8 Silent p.A410A 0.54 TCGA-NJ-A4YF-01 11 17527486 17527486 G - USH1C Frame_Shift_Del p.P675Qfs*32 0.18 TCGA-NJ-A4YF-01 11 26682113 26682113 T A ANO3 3'UTR 0.26 TCGA-NJ-A4YF-01 11 30032622 30032622 A T KCNA4 Missense_Mutation p.V535E 0.16 deleterious(0) probably_damaging(0.995) TCGA-NJ-A4YF-01 11 34473748 34473748 C T CAT Silent p.P158P 0.16 TCGA-NJ-A4YF-01 11 44080172 44080172 G T ACCSL Missense_Mutation p.R516L 0.42 tolerated(0.65) benign(0.283) TCGA-NJ-A4YF-01 11 45948932 45948932 A C GYLTL1B Silent p.T464T 0.25 TCGA-NJ-A4YF-01 11 46916282 46916282 G A LRP4 Silent p.N466N 0.08 TCGA-NJ-A4YF-01 11 47772743 47772743 G A FNBP4 Missense_Mutation p.P246L 0.24 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 11 5364533 5364533 G T OR51B5 Silent p.T74T 0.29 TCGA-NJ-A4YF-01 11 55595033 55595033 C - OR5L2 Frame_Shift_Del p.L114Cfs*4 0.26 TCGA-NJ-A4YF-01 11 55607148 55607148 C A OR5D16 Silent p.I307I 0.18 TCGA-NJ-A4YF-01 11 55927256 55927256 C T OR8K5 Missense_Mutation p.D180N 0.17 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-NJ-A4YF-01 11 55944498 55944498 C A OR5J2 Silent p.A135A 0.15 TCGA-NJ-A4YF-01 11 56020579 56020579 A T OR5T3 Missense_Mutation p.I302F 0.16 deleterious(0.03) benign(0.158) TCGA-NJ-A4YF-01 11 56043473 56043473 G T OR5T1 Missense_Mutation p.G120V 0.16 tolerated(0.23) benign(0.196) TCGA-NJ-A4YF-01 11 56086250 56086250 T C OR8K3 Silent p.S156S 0.18 TCGA-NJ-A4YF-01 11 56086338 56086338 C A OR8K3 Missense_Mutation p.P186T 0.14 tolerated_low_confidence(0.2) benign(0.005) TCGA-NJ-A4YF-01 11 56143841 56143841 G T OR8U1 Missense_Mutation p.V248F 0.41 deleterious(0) probably_damaging(0.974) TCGA-NJ-A4YF-01 11 56258428 56258428 C A OR5M8 Missense_Mutation p.C140F 0.42 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 11 5776439 5776439 C A OR52N4 Missense_Mutation p.L157I 0.26 tolerated(0.14) possibly_damaging(0.844) TCGA-NJ-A4YF-01 11 58390246 58390246 A T CNTF Silent p.S7S 0.29 TCGA-NJ-A4YF-01 11 59224473 59224473 T C OR4D6 Missense_Mutation p.F14L 0.45 tolerated(0.82) probably_damaging(0.98) TCGA-NJ-A4YF-01 11 60665647 60665647 C A PRPF19 Missense_Mutation p.D413Y 0.32 deleterious(0.03) probably_damaging(0.997) TCGA-NJ-A4YF-01 11 60785758 60785758 C A CD6 Intron 0.38 TCGA-NJ-A4YF-01 11 62933635 62933635 G A SLC22A25 Missense_Mutation p.T389I 0.14 tolerated(0.14) benign(0.033) TCGA-NJ-A4YF-01 11 6411875 6411875 G T SMPD1 Missense_Mutation p.G16V 0.47 tolerated_low_confidence(0.12) benign(0.206) TCGA-NJ-A4YF-01 11 64361183 64361183 C A SLC22A12 Silent p.G246G 0.29 TCGA-NJ-A4YF-01 11 64662492 64662492 G - ATG2A Frame_Shift_Del p.H1924Tfs*53 0.19 TCGA-NJ-A4YF-01 11 65108946 65108946 C T DPF2 Silent p.D126D 0.19 TCGA-NJ-A4YF-01 11 65687863 65687863 G T DRAP1 Missense_Mutation p.V87L 0.16 deleterious(0) probably_damaging(0.974) TCGA-NJ-A4YF-01 11 65687872 65687872 G T DRAP1 Missense_Mutation p.V90F 0.17 deleterious(0) possibly_damaging(0.858) TCGA-NJ-A4YF-01 11 71276697 71276697 G T KRTAP5-10 Missense_Mutation p.G22W 0.40 unknown(0) TCGA-NJ-A4YF-01 11 7530966 7530966 C A OLFML1 Silent p.L252L 0.40 TCGA-NJ-A4YF-01 11 75902629 75902629 C A WNT11 Missense_Mutation p.G290V 0.48 deleterious(0) probably_damaging(0.974) TCGA-NJ-A4YF-01 11 82868423 82868423 G T PCF11 5'UTR 0.13 TCGA-NJ-A4YF-01 11 89936557 89936557 C A CHORDC1 Missense_Mutation p.Q236H 0.21 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 11 92087817 92087817 G C FAT3 Missense_Mutation p.G847R 0.48 probably_damaging(0.986) TCGA-NJ-A4YF-01 11 92495068 92495068 G T FAT3 Missense_Mutation p.W1239L 0.51 benign(0.364) TCGA-NJ-A4YF-01 11 92532696 92532696 G C FAT3 Missense_Mutation p.E2173Q 0.11 probably_damaging(0.978) TCGA-NJ-A4YF-01 11 92613977 92613977 C T FAT3 Missense_Mutation p.R4070W 0.14 probably_damaging(0.952) TCGA-NJ-A4YF-01 11 94862629 94862629 C G ENDOD1 Silent p.V463V 0.31 TCGA-NJ-A4YF-01 11 95712167 95712167 T C MAML2 Missense_Mutation p.N1139S 0.08 unknown(0) TCGA-NJ-A4YF-01 11 99690497 99690497 G A CNTN5 Splice_Site p.X93_splice 0.38 TCGA-NJ-A4YF-01 11 99942489 99942489 C A CNTN5 Nonsense_Mutation p.S451* 0.33 TCGA-NJ-A4YF-01 12 100433439 100433439 C A UHRF1BP1L Missense_Mutation p.G1404W 0.28 deleterious(0.01) benign(0.325) TCGA-NJ-A4YF-01 12 100887062 100887062 G T NR1H4 5'UTR 0.40 TCGA-NJ-A4YF-01 12 10145683 10145683 A G CLEC1B 3'UTR 0.26 TCGA-NJ-A4YF-01 12 101477480 101477480 G T ANO4 Missense_Mutation p.A439S 0.19 deleterious(0.01) probably_damaging(0.947) TCGA-NJ-A4YF-01 12 101490387 101490387 G T ANO4 Silent p.L569L 0.23 TCGA-NJ-A4YF-01 12 102057294 102057294 C A MYBPC1 Missense_Mutation p.A746E 0.27 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YF-01 12 104408807 104408807 C A GLT8D2 Silent p.V32V 0.21 TCGA-NJ-A4YF-01 12 10750682 10750682 C A KLRAP1 RNA 0.26 TCGA-NJ-A4YF-01 12 10782263 10782263 C T STYK1 Silent p.G154G 0.27 TCGA-NJ-A4YF-01 12 109577486 109577486 A C ACACB Silent p.L92L 0.11 TCGA-NJ-A4YF-01 12 111776137 111776137 G T CUX2 Missense_Mutation p.V1082L 0.57 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YF-01 12 112673516 112673516 T C HECTD4 Silent p.Q1693Q 0.13 TCGA-NJ-A4YF-01 12 113830710 113830710 G C SDS 3'UTR 0.13 TCGA-NJ-A4YF-01 12 117701725 117701725 G T NOS1 Silent p.R731R 0.53 TCGA-NJ-A4YF-01 12 118457468 118457468 A G RFC5 Silent p.P54P 0.49 TCGA-NJ-A4YF-01 12 123476314 123476314 C A PITPNM2 Intron 0.64 TCGA-NJ-A4YF-01 12 125834577 125834577 G A TMEM132B Missense_Mutation p.G211E 0.62 tolerated(1) benign(0.009) TCGA-NJ-A4YF-01 12 13715933 13715933 C A GRIN2B Silent p.G1413G 0.18 TCGA-NJ-A4YF-01 12 14577246 14577246 G C ATF7IP Missense_Mutation p.D133H 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.878) TCGA-NJ-A4YF-01 12 21450339 21450339 C A SLCO1A2 Missense_Mutation p.M358I 0.32 tolerated(1) benign(0.001) TCGA-NJ-A4YF-01 12 25147218 25147218 C A C12orf77 3'UTR 0.50 TCGA-NJ-A4YF-01 12 26775302 26775302 T C ITPR2 Silent p.G1053G 0.46 TCGA-NJ-A4YF-01 12 33559774 33559774 C A SYT10 Missense_Mutation p.D343Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YF-01 12 40013511 40013511 G T ABCD2 5'UTR 0.20 TCGA-NJ-A4YF-01 12 45209899 45209899 C A NELL2 Missense_Mutation p.A119S 0.17 deleterious(0.04) probably_damaging(0.99) TCGA-NJ-A4YF-01 12 49229929 49229929 T C DDX23 Missense_Mutation p.I453V 0.15 deleterious(0.02) benign(0.371) TCGA-NJ-A4YF-01 12 50369477 50369477 C A AQP6 3'UTR 0.24 TCGA-NJ-A4YF-01 12 51511500 51511500 T A TFCP2 Missense_Mutation p.N102I 0.38 deleterious(0) possibly_damaging(0.848) TCGA-NJ-A4YF-01 12 51722333 51722333 G - CELA1 3'UTR 0.15 TCGA-NJ-A4YF-01 12 52845737 52845737 C A KRT6B Missense_Mutation p.R42S 0.18 tolerated(1) unknown(0) TCGA-NJ-A4YF-01 12 52886532 52886532 G A KRT6A Silent p.P147P 0.20 TCGA-NJ-A4YF-01 12 53215566 53215566 C A KRT79 3'UTR 0.33 TCGA-NJ-A4YF-01 12 55614831 55614831 G A OR10A7 Missense_Mutation p.R8K 0.22 tolerated(0.53) benign(0) TCGA-NJ-A4YF-01 12 56559102 56559102 C A SMARCC2 Missense_Mutation p.G1047C 0.16 tolerated_low_confidence(0.09) unknown(0) TCGA-NJ-A4YF-01 12 57437115 57437115 C T MYO1A Missense_Mutation p.G307D 0.31 deleterious(0.04) benign(0.191) TCGA-NJ-A4YF-01 12 57881752 57881752 G T MARS 5'UTR 0.33 TCGA-NJ-A4YF-01 12 70974916 70974916 G C PTPRB Nonsense_Mutation p.Y826* 0.20 TCGA-NJ-A4YF-01 12 71158552 71158552 G T PTPRR Missense_Mutation p.Q122K 0.19 tolerated(0.14) benign(0.006) TCGA-NJ-A4YF-01 12 71918239 71918239 T A LGR5 Missense_Mutation p.L113H 0.25 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 12 7639539 7639540 CA T CD163 Frame_Shift_Del p.L698* 0.20 TCGA-NJ-A4YF-01 12 8800681 8800681 C A MFAP5 3'UTR 0.31 TCGA-NJ-A4YF-01 12 8904555 8904555 G T RIMKLB Missense_Mutation p.G137C 0.20 deleterious(0) probably_damaging(0.971) TCGA-NJ-A4YF-01 12 93881322 93881322 A T MRPL42 Missense_Mutation p.Q90L 0.25 tolerated(0.15) benign(0.021) TCGA-NJ-A4YF-01 13 107187328 107187328 A T EFNB2 5'UTR 0.38 TCGA-NJ-A4YF-01 13 21557821 21557821 C A LATS2 Missense_Mutation p.G675V 0.26 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 13 24465993 24465993 C T C1QTNF9B Missense_Mutation p.G146D 0.21 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 13 25264849 25264849 G T ATP12A Silent p.T263T 0.24 TCGA-NJ-A4YF-01 13 26621047 26621047 G T SHISA2 Silent p.I164I 0.43 TCGA-NJ-A4YF-01 13 28537263 28537263 C A CDX2 Missense_Mutation p.V311F 0.55 deleterious_low_confidence(0) unknown(0) TCGA-NJ-A4YF-01 13 35683457 35683457 C T NBEA Silent p.L571L 0.44 TCGA-NJ-A4YF-01 13 36348790 36348790 T C DCLK1 Missense_Mutation p.T727A 0.39 deleterious_low_confidence(0) benign(0.001) TCGA-NJ-A4YF-01 13 38229378 38229378 C G TRPC4 Silent p.G577G 0.24 TCGA-NJ-A4YF-01 13 41517143 41517143 C A ELF1 Missense_Mutation p.G251W 0.18 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 13 50489123 50489123 T C SPRYD7 3'UTR 0.69 TCGA-NJ-A4YF-01 13 58299071 58299071 G T PCDH17 Missense_Mutation p.K1041N 0.27 tolerated_low_confidence(0.18) benign(0.016) TCGA-NJ-A4YF-01 13 58299167 58299167 C T PCDH17 Silent p.P1073P 0.27 TCGA-NJ-A4YF-01 13 77692590 77692590 T A MYCBP2 Intron 0.44 TCGA-NJ-A4YF-01 14 100118961 100118961 G T HHIPL1 Missense_Mutation p.W219L 0.67 deleterious(0.02) probably_damaging(1) TCGA-NJ-A4YF-01 14 19378004 19378004 G A OR11H12 Silent p.Q137Q 0.51 TCGA-NJ-A4YF-01 14 22966687 22966687 G A TRAJ41 Silent p.S16S 0.67 TCGA-NJ-A4YF-01 14 24542889 24542889 T A CPNE6 Splice_Site p.X116_splice 0.61 TCGA-NJ-A4YF-01 14 24567862 24567862 C T PCK2 Silent p.S213S 0.39 TCGA-NJ-A4YF-01 14 32328414 32328414 G A NUBPL 3'UTR 0.71 TCGA-NJ-A4YF-01 14 47311201 47311201 C A MDGA2 Missense_Mutation p.G1004V 0.48 tolerated_low_confidence(0.06) benign(0.114) TCGA-NJ-A4YF-01 14 47311202 47311202 C A MDGA2 Missense_Mutation p.G1004W 0.48 deleterious_low_confidence(0.01) possibly_damaging(0.719) TCGA-NJ-A4YF-01 14 60585185 60585185 T A PCNXL4 Missense_Mutation p.S339T 0.46 tolerated(0.16) benign(0.03) TCGA-NJ-A4YF-01 14 63417106 63417106 C A KCNH5 Missense_Mutation p.D372Y 0.54 tolerated(0.1) probably_damaging(0.995) TCGA-NJ-A4YF-01 14 76107310 76107310 T C FLVCR2 Silent p.T416T 0.44 TCGA-NJ-A4YF-01 14 80164008 80164008 A G NRXN3 Missense_Mutation p.I845V 0.53 tolerated(0.35) benign(0) TCGA-NJ-A4YF-01 14 99641428 99641428 C A BCL11B Missense_Mutation p.G582V 0.63 tolerated(0.26) possibly_damaging(0.573) TCGA-NJ-A4YF-01 15 26806203 26806203 A T GABRB3 Missense_Mutation p.L319Q 0.30 deleterious(0.03) probably_damaging(0.992) TCGA-NJ-A4YF-01 15 27571989 27571989 T A GABRG3 Missense_Mutation p.W102R 0.53 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YF-01 15 27571991 27571991 G A GABRG3 Nonsense_Mutation p.W102* 0.53 TCGA-NJ-A4YF-01 15 27765270 27765270 G C GABRG3 Missense_Mutation p.G289R 0.42 deleterious(0) probably_damaging(0.97) TCGA-NJ-A4YF-01 15 31334279 31334279 C G TRPM1 Missense_Mutation p.W671C 0.47 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YF-01 15 31362160 31362160 A T TRPM1 Intron 0.46 TCGA-NJ-A4YF-01 15 40949552 40949552 G T CASC5 Splice_Site p.X2225_splice 0.22 TCGA-NJ-A4YF-01 15 42568592 42568592 A T GANC Nonsense_Mutation p.K26* 0.12 TCGA-NJ-A4YF-01 15 43818676 43818676 C A MAP1A Missense_Mutation p.P1669T 0.39 benign(0.208) TCGA-NJ-A4YF-01 15 48063679 48063679 T C SEMA6D Silent p.S973S 0.20 TCGA-NJ-A4YF-01 15 50171572 50171572 C A ATP8B4 Splice_Site p.X927_splice 0.71 TCGA-NJ-A4YF-01 15 53081196 53081196 C G ONECUT1 Missense_Mutation p.E296Q 0.27 deleterious(0.04) benign(0.31) TCGA-NJ-A4YF-01 15 58247213 58247213 C T ALDH1A2 3'UTR 0.40 TCGA-NJ-A4YF-01 15 58933072 58933072 C A ADAM10 Nonsense_Mutation p.E306* 0.57 TCGA-NJ-A4YF-01 15 76496119 76496119 C A C15orf27 Silent p.T353T 0.22 TCGA-NJ-A4YF-01 15 83221240 83221240 C A CPEB1 Missense_Mutation p.R397L 0.29 deleterious(0) possibly_damaging(0.872) TCGA-NJ-A4YF-01 15 89056202 89056202 T A DET1 Missense_Mutation p.M556L 0.54 tolerated(0.53) benign(0.002) TCGA-NJ-A4YF-01 15 93510663 93510663 A T CHD2 Missense_Mutation p.K703N 0.24 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YF-01 16 15818106 15818106 T C NDE1 Nonstop_Mutation p.*336Rext*11 0.26 TCGA-NJ-A4YF-01 16 15818107 15818107 G T NDE1 Nonstop_Mutation p.*336Lext*11 0.27 TCGA-NJ-A4YF-01 16 20986733 20986733 G T DNAH3 Missense_Mutation p.A2694E 0.56 tolerated(0.05) benign(0.396) TCGA-NJ-A4YF-01 16 20986734 20986734 C T DNAH3 Missense_Mutation p.A2694T 0.55 tolerated(0.14) benign(0.007) TCGA-NJ-A4YF-01 16 23119382 23119382 G T USP31 Silent p.G252G 0.20 TCGA-NJ-A4YF-01 16 23360114 23360114 G T SCNN1B Missense_Mutation p.W65L 0.33 deleterious(0.02) probably_damaging(0.919) TCGA-NJ-A4YF-01 16 27448890 27448890 C A IL21R Silent p.T78T 0.29 TCGA-NJ-A4YF-01 16 29891309 29891309 T A SEZ6L2 Silent p.P483P 0.43 TCGA-NJ-A4YF-01 16 30198403 30198403 G - CORO1A Frame_Shift_Del p.A166Pfs*3 0.17 TCGA-NJ-A4YF-01 16 30734386 30734386 G T SRCAP Missense_Mutation p.R1332L 0.36 benign(0.25) TCGA-NJ-A4YF-01 16 30774447 30774447 G T RNF40 Missense_Mutation p.M47I 0.19 deleterious(0.02) benign(0.088) TCGA-NJ-A4YF-01 16 49670581 49670581 C T ZNF423 Missense_Mutation p.E828K 0.12 tolerated(0.14) benign(0.224) TCGA-NJ-A4YF-01 16 55806374 55806374 G T CES1P1 RNA 0.21 TCGA-NJ-A4YF-01 16 57718061 57718061 G T GPR97 Missense_Mutation p.A367S 0.31 tolerated(0.1) benign(0.209) TCGA-NJ-A4YF-01 16 57722429 57722429 A T GPR97 3'UTR 0.10 TCGA-NJ-A4YF-01 16 64981904 64981904 C A CDH11 Missense_Mutation p.D665Y 0.29 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 16 67210805 67210805 T C KIAA0895L Missense_Mutation p.Q442R 0.19 tolerated(0.11) benign(0.072) TCGA-NJ-A4YF-01 16 67719642 67719642 C A GFOD2 5'UTR 0.39 TCGA-NJ-A4YF-01 16 70363206 70363206 C T DDX19B Nonsense_Mutation p.Q207* 0.39 TCGA-NJ-A4YF-01 16 71606527 71606527 G C TAT Missense_Mutation p.P158R 0.43 tolerated(0.2) benign(0.023) TCGA-NJ-A4YF-01 16 75681551 75681551 C A KARS 5'UTR 0.40 TCGA-NJ-A4YF-01 16 81944140 81944140 C G PLCG2 Silent p.V583V 0.40 TCGA-NJ-A4YF-01 16 89789067 89789067 G T ZNF276 Missense_Mutation p.V112L 0.15 tolerated(0.25) benign(0.445) TCGA-NJ-A4YF-01 17 10356595 10356595 C A MYH4 Missense_Mutation p.K995N 0.21 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YF-01 17 10404447 10404447 C A MYH1 Nonsense_Mutation p.E1240* 0.57 TCGA-NJ-A4YF-01 17 11865293 11865293 C A DNAH9 Missense_Mutation p.A4318E 0.20 possibly_damaging(0.493) TCGA-NJ-A4YF-01 17 26818829 26818829 G T SLC13A2 Silent p.L328L 0.23 TCGA-NJ-A4YF-01 17 26946973 26946973 C - KIAA0100 Frame_Shift_Del p.E1809Sfs*31 0.32 TCGA-NJ-A4YF-01 17 31355322 31355322 C T ASIC2 Missense_Mutation p.R359K 0.23 deleterious(0) probably_damaging(0.996) TCGA-NJ-A4YF-01 17 32955581 32955581 G C TMEM132E Splice_Site p.X243_splice 0.44 TCGA-NJ-A4YF-01 17 33513716 33513716 G A UNC45B 3'UTR 0.27 TCGA-NJ-A4YF-01 17 3594303 3594304 - A P2RX5 Frame_Shift_Ins p.V103Cfs*18 0.31 TCGA-NJ-A4YF-01 17 36874126 36874126 G T MLLT6 Missense_Mutation p.S621I 0.32 deleterious(0) unknown(0) TCGA-NJ-A4YF-01 17 36909006 36909006 G T PSMB3 5'UTR 0.51 TCGA-NJ-A4YF-01 17 38937465 38937465 G C KRT27 Missense_Mutation p.L168V 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-NJ-A4YF-01 17 39538461 39538461 C A KRT34 Missense_Mutation p.R55L 0.12 tolerated(0.31) possibly_damaging(0.651) TCGA-NJ-A4YF-01 17 39981744 39981744 C A NT5C3B 3'Flank 0.52 TCGA-NJ-A4YF-01 17 41245429 41245429 C G BRCA1 Missense_Mutation p.G707R 0.18 deleterious(0) possibly_damaging(0.776) TCGA-NJ-A4YF-01 17 42476575 42476575 C A GPATCH8 Missense_Mutation p.R957L 0.46 deleterious(0) unknown(0) TCGA-NJ-A4YF-01 17 42928637 42928637 C A EFTUD2 3'UTR 0.16 TCGA-NJ-A4YF-01 17 46055224 46055224 G C CDK5RAP3 Missense_Mutation p.W312C 0.15 deleterious(0) probably_damaging(0.996) TCGA-NJ-A4YF-01 17 48557272 48557272 C A RSAD1 Missense_Mutation p.P101T 0.34 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 17 48680525 48680525 G T CACNA1G Missense_Mutation p.R1378S 0.46 deleterious(0.03) probably_damaging(0.977) TCGA-NJ-A4YF-01 17 5329319 5329319 G C RPAIN Missense_Mutation p.K114N 0.21 tolerated(0.11) possibly_damaging(0.726) TCGA-NJ-A4YF-01 17 55083532 55083532 A T SCPEP1 Splice_Site p.X433_splice 0.40 TCGA-NJ-A4YF-01 17 55478757 55478757 G T MSI2 Missense_Mutation p.K110N 0.08 deleterious(0) probably_damaging(0.973) TCGA-NJ-A4YF-01 17 55962795 55962795 C A CUEDC1 Missense_Mutation p.R44L 0.51 deleterious(0) probably_damaging(0.963) TCGA-NJ-A4YF-01 17 64683267 64683267 G A PRKCA Missense_Mutation p.G190R 0.23 deleterious(0) probably_damaging(0.987) TCGA-NJ-A4YF-01 17 66938152 66938152 C A ABCA8 Silent p.V8V 0.27 TCGA-NJ-A4YF-01 17 67132165 67132165 C A ABCA6 Intron 0.24 TCGA-NJ-A4YF-01 17 68128529 68128529 G C KCNJ16 Missense_Mutation p.D101H 0.24 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 17 68171520 68171520 G T KCNJ2 Missense_Mutation p.D114Y 0.22 deleterious(0.01) benign(0.294) TCGA-NJ-A4YF-01 17 6979160 6979160 G T CLEC10A Missense_Mutation p.Q189K 0.53 tolerated(0.06) benign(0.001) TCGA-NJ-A4YF-01 17 74469806 74469806 T A RHBDF2 Missense_Mutation p.R582W 0.27 deleterious(0.01) benign(0.325) TCGA-NJ-A4YF-01 17 74469808 74469808 G T RHBDF2 Missense_Mutation p.A581D 0.28 tolerated(0.57) benign(0.273) TCGA-NJ-A4YF-01 17 7578257 7578257 C A TP53 Nonsense_Mutation p.E198* 0.56 TCGA-NJ-A4YF-01 17 78268764 78268764 G T RNF213 Missense_Mutation p.A573S 0.35 benign(0.014) TCGA-NJ-A4YF-01 17 79650911 79650911 G T ARL16 5'UTR 0.20 TCGA-NJ-A4YF-01 17 8480657 8480657 C A MYH10 Splice_Site p.X177_splice 0.56 TCGA-NJ-A4YF-01 18 12427071 12427071 A T SLMO1 Missense_Mutation p.E108V 0.37 deleterious(0) probably_damaging(0.975) TCGA-NJ-A4YF-01 18 14543153 14543153 T A POTEC 5'Flank 0.21 TCGA-NJ-A4YF-01 18 14543156 14543156 C A POTEC 5'Flank 0.24 TCGA-NJ-A4YF-01 18 25570186 25570186 T A CDH2 Silent p.V491V 0.45 TCGA-NJ-A4YF-01 18 34191969 34191969 G T FHOD3 Nonsense_Mutation p.E290* 0.37 TCGA-NJ-A4YF-01 18 40854026 40854026 G T SYT4 Missense_Mutation p.P123Q 0.21 tolerated(0.21) benign(0.005) TCGA-NJ-A4YF-01 18 50918212 50918212 C A DCC Nonsense_Mutation p.Y881* 0.36 TCGA-NJ-A4YF-01 18 52937195 52937195 C A TCF4 Splice_Site p.X366_splice 0.24 TCGA-NJ-A4YF-01 18 54339881 54339881 C T WDR7 Silent p.L45L 0.49 TCGA-NJ-A4YF-01 18 56204259 56204259 G T ALPK2 Missense_Mutation p.Q1054K 0.55 tolerated(0.15) benign(0.031) TCGA-NJ-A4YF-01 18 61309072 61309072 T C SERPINB4 Silent p.E91E 0.26 TCGA-NJ-A4YF-01 19 10158050 10158050 C A C3P1 RNA 0.46 TCGA-NJ-A4YF-01 19 10450346 10450346 C A ICAM3 5'UTR 0.29 TCGA-NJ-A4YF-01 19 1220707 1220707 G T STK11 Missense_Mutation p.G242V 0.68 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 19 12902819 12902819 G C JUNB Silent p.A78A 0.81 TCGA-NJ-A4YF-01 19 14247228 14247228 T A ASF1B Missense_Mutation p.N14I 0.34 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YF-01 19 15052371 15052371 A T OR7C2 Missense_Mutation p.Q24L 0.54 deleterious_low_confidence(0) benign(0.367) TCGA-NJ-A4YF-01 19 19740856 19740856 T C GMIP Silent p.L943L 0.47 TCGA-NJ-A4YF-01 19 22154427 22154427 C A ZNF208 Nonsense_Mutation p.G1137* 0.48 TCGA-NJ-A4YF-01 19 37677025 37677025 C A ZNF585B Missense_Mutation p.G472W 0.59 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 19 38956792 38956792 C T RYR1 Missense_Mutation p.P978S 0.85 possibly_damaging(0.574) TCGA-NJ-A4YF-01 19 41019265 41019265 G T SPTBN4 Missense_Mutation p.V857L 0.69 tolerated(0.3) benign(0.437) TCGA-NJ-A4YF-01 19 45024562 45024562 C A CEACAM20 RNA 0.49 TCGA-NJ-A4YF-01 19 49259514 49259514 G T FGF21 Silent p.G7G 0.38 TCGA-NJ-A4YF-01 19 52003342 52003342 C A SIGLEC12 Nonsense_Mutation p.E214* 0.50 TCGA-NJ-A4YF-01 19 52443467 52443467 A T ZNF613 Silent p.S7S 0.54 TCGA-NJ-A4YF-01 19 54198475 54198475 G T MIR519B RNA 0.60 TCGA-NJ-A4YF-01 19 54754648 54754648 G T LILRB5 3'UTR 0.57 TCGA-NJ-A4YF-01 19 55085979 55085979 G T LILRA2 Silent p.R94R 0.62 TCGA-NJ-A4YF-01 19 55451188 55451188 G T NLRP7 Missense_Mutation p.F333L 0.54 deleterious(0.01) probably_damaging(0.986) TCGA-NJ-A4YF-01 19 55494170 55494170 C A NLRP2 Missense_Mutation p.F368L 0.08 deleterious(0.01) probably_damaging(0.957) TCGA-NJ-A4YF-01 19 9056773 9056773 C A MUC16 Missense_Mutation p.V10225L 0.46 benign(0.043) TCGA-NJ-A4YF-01 19 9087201 9087201 G A MUC16 Silent p.T1538T 0.55 TCGA-NJ-A4YF-01 19 9089551 9089551 C T MUC16 Missense_Mutation p.G755E 0.26 unknown(0) TCGA-NJ-A4YF-01 1 101004809 101004809 C T GPR88 Missense_Mutation p.T96I 0.56 tolerated(0.18) benign(0.276) TCGA-NJ-A4YF-01 1 102312544 102312544 T G OLFM3 Intron 0.06 TCGA-NJ-A4YF-01 1 104114790 104114790 G T AMY2B Missense_Mutation p.R76I 0.20 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 1 110295756 110295756 G A EPS8L3 Missense_Mutation p.P396S 0.19 tolerated(0.07) possibly_damaging(0.527) TCGA-NJ-A4YF-01 1 110302415 110302415 G T EPS8L3 Missense_Mutation p.P47H 0.29 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 1 111146622 111146622 C A KCNA2 Silent p.V261V 0.23 TCGA-NJ-A4YF-01 1 11126715 11126715 T C EXOSC10 3'UTR 0.27 TCGA-NJ-A4YF-01 1 112319769 112319769 G A KCND3 Missense_Mutation p.R549C 0.21 tolerated_low_confidence(0.09) possibly_damaging(0.898) TCGA-NJ-A4YF-01 1 1159233 1159233 C T SDF4 Missense_Mutation p.A148T 0.17 tolerated(0.3) benign(0.041) TCGA-NJ-A4YF-01 1 117509804 117509804 G T PTGFRN Missense_Mutation p.E637D 0.40 tolerated(0.08) probably_damaging(0.997) TCGA-NJ-A4YF-01 1 118583386 118583387 - C SPAG17 Frame_Shift_Ins p.Q1045Afs*3 0.19 TCGA-NJ-A4YF-01 1 12884856 12884856 G T PRAMEF11 Missense_Mutation p.P419T 0.17 deleterious(0) benign(0.392) TCGA-NJ-A4YF-01 1 143767400 143767400 C T PPIAL4G Missense_Mutation p.S150N 0.10 deleterious_low_confidence(0) benign(0.102) TCGA-NJ-A4YF-01 1 144882556 144882556 C A PDE4DIP Missense_Mutation p.G1155C 0.27 tolerated(0.22) benign(0.001) TCGA-NJ-A4YF-01 1 146747131 146747131 A T CHD1L Missense_Mutation p.K462M 0.27 deleterious(0) probably_damaging(0.982) TCGA-NJ-A4YF-01 1 147381150 147381150 G C GJA8 Silent p.L356L 0.56 TCGA-NJ-A4YF-01 1 152060628 152060628 A C TCHHL1 5'UTR 0.50 TCGA-NJ-A4YF-01 1 152188170 152188170 G T HRNR Missense_Mutation p.P1979T 0.05 unknown(0) TCGA-NJ-A4YF-01 1 152188358 152188358 C A HRNR Missense_Mutation p.S1916I 0.06 unknown(0) TCGA-NJ-A4YF-01 1 152285804 152285804 G T FLG Missense_Mutation p.P520T 0.46 benign(0.118) TCGA-NJ-A4YF-01 1 152285986 152285986 C A FLG Missense_Mutation p.G459V 0.42 probably_damaging(0.922) TCGA-NJ-A4YF-01 1 152286901 152286901 G C FLG Missense_Mutation p.S154C 0.13 probably_damaging(0.987) TCGA-NJ-A4YF-01 1 152760300 152760300 C T LCE1E 3'UTR 0.38 TCGA-NJ-A4YF-01 1 152777346 152777346 C A LCE1C 3'UTR 0.21 TCGA-NJ-A4YF-01 1 153012808 153012808 C A SPRR2D Missense_Mutation p.Q5H 0.25 deleterious_low_confidence(0.02) unknown(0) TCGA-NJ-A4YF-01 1 155922485 155922485 G C ARHGEF2 Missense_Mutation p.L640V 0.37 deleterious(0.04) probably_damaging(0.996) TCGA-NJ-A4YF-01 1 157493956 157493956 G T FCRL5 Intron 0.18 TCGA-NJ-A4YF-01 1 157771821 157771821 C A FCRL1 Missense_Mutation p.G257V 0.41 deleterious(0) probably_damaging(0.997) TCGA-NJ-A4YF-01 1 158324317 158324317 T A CD1E Missense_Mutation p.V70D 0.31 tolerated(0.62) benign(0.001) TCGA-NJ-A4YF-01 1 158517185 158517185 C A OR6Y1 Missense_Mutation p.Q237H 0.31 deleterious(0.05) benign(0.12) TCGA-NJ-A4YF-01 1 158517643 158517644 TG A OR6Y1 Frame_Shift_Del p.K85Rfs*19 0.10 TCGA-NJ-A4YF-01 1 158670283 158670283 G C OR6K2 Missense_Mutation p.H54D 0.44 deleterious(0.03) benign(0.104) TCGA-NJ-A4YF-01 1 159175408 159175408 C A DARC Missense_Mutation p.S62Y 0.43 deleterious(0.05) probably_damaging(0.999) TCGA-NJ-A4YF-01 1 160389256 160389256 C T VANGL2 Silent p.A219A 0.15 TCGA-NJ-A4YF-01 1 161200595 161200595 C T NR1I3 Intron 0.51 TCGA-NJ-A4YF-01 1 162335208 162335208 G T RP11-565P22.6 Missense_Mutation p.K4N 0.27 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YF-01 1 162569180 162569180 G A UAP1 3'UTR 0.19 TCGA-NJ-A4YF-01 1 172634968 172634968 C A FASLG Missense_Mutation p.Q220K 0.28 tolerated(0.72) benign(0.01) TCGA-NJ-A4YF-01 1 176833356 176833356 C A ASTN1 3'UTR 0.18 TCGA-NJ-A4YF-01 1 182874672 182874672 G T SHCBP1L Missense_Mutation p.A432D 0.23 deleterious(0) possibly_damaging(0.854) TCGA-NJ-A4YF-01 1 183908086 183908086 C A COLGALT2 Missense_Mutation p.G564C 0.24 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YF-01 1 186276832 186276832 C A PRG4 Missense_Mutation p.P661T 0.22 unknown(0) TCGA-NJ-A4YF-01 1 186281522 186281522 T A TPR 3'UTR 0.33 TCGA-NJ-A4YF-01 1 186957590 186957590 G T PLA2G4A Nonsense_Mutation p.E734* 0.35 TCGA-NJ-A4YF-01 1 18809043 18809043 G C KLHDC7A Missense_Mutation p.R523P 0.35 tolerated(0.25) benign(0.002) TCGA-NJ-A4YF-01 1 190068181 190068181 G A BRINP3 Missense_Mutation p.T423M 0.16 tolerated(0.06) benign(0.182) TCGA-NJ-A4YF-01 1 190250787 190250787 G C BRINP3 Missense_Mutation p.N110K 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-NJ-A4YF-01 1 192153733 192153733 T A RGS18 3'UTR 0.32 TCGA-NJ-A4YF-01 1 196963358 196963358 G A CFHR5 Silent p.G193G 0.37 TCGA-NJ-A4YF-01 1 197168763 197168763 T A ZBTB41 Missense_Mutation p.N281Y 0.27 deleterious(0.02) benign(0.254) TCGA-NJ-A4YF-01 1 197297791 197297791 G T CRB1 Missense_Mutation p.G104W 0.23 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 1 197391015 197391015 G C CRB1 Missense_Mutation p.R686P 0.34 deleterious(0) probably_damaging(0.939) TCGA-NJ-A4YF-01 1 197552327 197552327 C A DENND1B Missense_Mutation p.M368I 0.16 deleterious(0.03) benign(0.314) TCGA-NJ-A4YF-01 1 200558402 200558402 T A KIF14 Missense_Mutation p.E1019D 0.36 deleterious(0.01) probably_damaging(0.927) TCGA-NJ-A4YF-01 1 200811142 200811142 G T CAMSAP2 Missense_Mutation p.M316I 0.10 tolerated(0.35) benign(0.09) TCGA-NJ-A4YF-01 1 204412697 204412697 G A PIK3C2B Nonsense_Mutation p.Q966* 0.30 TCGA-NJ-A4YF-01 1 205210776 205210776 T C TMCC2 Silent p.H117H 0.24 TCGA-NJ-A4YF-01 1 207684993 207684994 TG - CR1 Frame_Shift_Del p.C161* 0.26 TCGA-NJ-A4YF-01 1 207751383 207751383 C A CR1 Missense_Mutation p.P1591T 0.16 deleterious(0) benign(0.124) TCGA-NJ-A4YF-01 1 207751384 207751384 C A CR1 Missense_Mutation p.P1591Q 0.16 deleterious(0) possibly_damaging(0.523) TCGA-NJ-A4YF-01 1 210334347 210334347 G T SYT14 Missense_Mutation p.G607V 0.32 deleterious(0) probably_damaging(0.991) TCGA-NJ-A4YF-01 1 216380620 216380620 G C USH2A Missense_Mutation p.P1104R 0.14 probably_damaging(0.993) TCGA-NJ-A4YF-01 1 216538378 216538378 T G USH2A Missense_Mutation p.H234P 0.22 benign(0.18) TCGA-NJ-A4YF-01 1 21797140 21797140 A T NBPF3 Missense_Mutation p.K120I 0.15 deleterious(0) possibly_damaging(0.902) TCGA-NJ-A4YF-01 1 222923346 222923346 G C FAM177B Silent p.G141G 0.39 TCGA-NJ-A4YF-01 1 228522212 228522212 G T OBSCN Splice_Site p.X6309_splice 0.18 TCGA-NJ-A4YF-01 1 229637784 229637784 G C NUP133 Missense_Mutation p.L123V 0.47 deleterious(0.04) probably_damaging(0.973) TCGA-NJ-A4YF-01 1 231830369 231830369 C A DISC1 Missense_Mutation p.R289S 0.34 tolerated(0.42) benign(0.031) TCGA-NJ-A4YF-01 1 233134990 233134990 C G PCNXL2 Missense_Mutation p.D1822H 0.33 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 1 236208834 236208834 T C NID1 Silent p.S225S 0.48 TCGA-NJ-A4YF-01 1 237604716 237604716 C A RYR2 Missense_Mutation p.T368K 0.29 benign(0.272) TCGA-NJ-A4YF-01 1 237880513 237880513 C G RYR2 Missense_Mutation p.Q3447E 0.58 benign(0.179) TCGA-NJ-A4YF-01 1 237897042 237897042 G T RYR2 Missense_Mutation p.D3693Y 0.14 possibly_damaging(0.88) TCGA-NJ-A4YF-01 1 237951287 237951287 G T RYR2 Splice_Site p.X4443_splice 0.54 TCGA-NJ-A4YF-01 1 238090195 238090195 C A RP11-193H5.1 RNA 0.58 TCGA-NJ-A4YF-01 1 238090305 238090305 C A RP11-193H5.1 RNA 0.12 TCGA-NJ-A4YF-01 1 247607989 247607989 G A NLRP3 Nonsense_Mutation p.W959* 0.13 TCGA-NJ-A4YF-01 1 248112391 248112391 C A OR2L8 Missense_Mutation p.P78T 0.16 deleterious(0) probably_damaging(0.945) TCGA-NJ-A4YF-01 1 248112392 248112392 C A OR2L8 Missense_Mutation p.P78H 0.16 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YF-01 1 248129575 248129575 G A OR2AK2 Silent p.G314G 0.11 TCGA-NJ-A4YF-01 1 248201571 248201571 T A OR2L2 Translation_Start_Site p.M1? 0.10 deleterious(0) possibly_damaging(0.852) TCGA-NJ-A4YF-01 1 248367069 248367069 C A OR2M3 Missense_Mutation p.R234S 0.10 deleterious(0.02) benign(0.396) TCGA-NJ-A4YF-01 1 248402328 248402328 G T OR2M4 Missense_Mutation p.G33V 0.11 tolerated(0.79) benign(0.033) TCGA-NJ-A4YF-01 1 248814083 248814083 A T OR2T27 Missense_Mutation p.F35I 0.08 deleterious(0.01) possibly_damaging(0.834) TCGA-NJ-A4YF-01 1 25717280 25717280 G T RHCE Nonsense_Mutation p.S254* 0.26 TCGA-NJ-A4YF-01 1 29018099 29018099 A C GMEB1 Missense_Mutation p.T82P 0.18 tolerated(0.29) benign(0) TCGA-NJ-A4YF-01 1 32154671 32154671 G A COL16A1 Nonsense_Mutation p.Q546* 0.17 TCGA-NJ-A4YF-01 1 32196546 32196546 T A BAI2 Missense_Mutation p.Y1412F 0.21 tolerated(0.44) benign(0.039) TCGA-NJ-A4YF-01 1 32636567 32636567 G T KPNA6 3'UTR 0.31 TCGA-NJ-A4YF-01 1 3432079 3432079 C T MEGF6 Missense_Mutation p.C206Y 0.26 deleterious(0.01) probably_damaging(0.922) TCGA-NJ-A4YF-01 1 36752726 36752726 C T THRAP3 Nonsense_Mutation p.Q299* 0.24 TCGA-NJ-A4YF-01 1 39340731 39340731 C T GJA9 Missense_Mutation p.S347N 0.45 tolerated(0.22) benign(0.001) TCGA-NJ-A4YF-01 1 39800894 39800894 G T MACF1 Intron 0.07 TCGA-NJ-A4YF-01 1 44257803 44257803 G T ST3GAL3 Missense_Mutation p.G65V 0.28 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-NJ-A4YF-01 1 44450671 44450671 C G B4GALT2 Nonsense_Mutation p.Y257* 0.27 TCGA-NJ-A4YF-01 1 54423866 54423866 G C LRRC42 Missense_Mutation p.R173P 0.24 deleterious(0.04) benign(0.284) TCGA-NJ-A4YF-01 1 55277779 55277779 C T C1orf177 Nonsense_Mutation p.R227* 0.04 TCGA-NJ-A4YF-01 1 6208915 6208915 G T CHD5 Missense_Mutation p.T461N 0.37 deleterious(0.03) possibly_damaging(0.763) TCGA-NJ-A4YF-01 1 66102072 66102072 C T LEPR Nonsense_Mutation p.Q958* 0.33 TCGA-NJ-A4YF-01 1 70385464 70385464 G T LRRC7 Intron 0.50 TCGA-NJ-A4YF-01 1 71538211 71538211 C A ZRANB2 Nonsense_Mutation p.E108* 0.31 TCGA-NJ-A4YF-01 1 75108771 75108771 C G C1orf173 Missense_Mutation p.Q85H 0.18 deleterious(0) possibly_damaging(0.835) TCGA-NJ-A4YF-01 1 75693544 75693544 T A SLC44A5 Splice_Site p.X285_splice 0.21 TCGA-NJ-A4YF-01 1 85397144 85397144 C G MCOLN2 Silent p.L481L 0.20 TCGA-NJ-A4YF-01 20 2321197 2321197 G A TGM3 Silent p.K684K 0.49 TCGA-NJ-A4YF-01 20 33570326 33570326 G C MYH7B Missense_Mutation p.A240P 0.67 probably_damaging(0.985) TCGA-NJ-A4YF-01 20 36694589 36694589 G A RPRD1B Silent p.L254L 0.36 TCGA-NJ-A4YF-01 20 39791175 39791175 C A PLCG1 Missense_Mutation p.T199K 0.63 tolerated(0.6) benign(0.081) TCGA-NJ-A4YF-01 20 41101110 41101110 G T PTPRT Missense_Mutation p.R416S 0.53 deleterious(0) probably_damaging(0.978) TCGA-NJ-A4YF-01 20 41419997 41419997 G T PTPRT Nonsense_Mutation p.Y108* 0.72 TCGA-NJ-A4YF-01 20 44036992 44036992 G T DBNDD2 Missense_Mutation p.G64V 0.66 tolerated_low_confidence(0.05) benign(0.07) TCGA-NJ-A4YF-01 20 44168073 44168073 G C WFDC6 5'UTR 0.66 TCGA-NJ-A4YF-01 20 48744631 48744631 G A TMEM189-UBE2V1 Missense_Mutation p.T191M 0.30 deleterious_low_confidence(0.03) probably_damaging(0.968) TCGA-NJ-A4YF-01 20 50713957 50713957 C T ZFP64 Missense_Mutation p.V114I 0.12 tolerated(0.58) probably_damaging(0.97) TCGA-NJ-A4YF-01 20 50769422 50769422 C - ZFP64 Frame_Shift_Del p.E437Rfs*22 0.10 TCGA-NJ-A4YF-01 20 50769804 50769804 C A ZFP64 Missense_Mutation p.K309N 0.11 tolerated(0.1) probably_damaging(0.994) TCGA-NJ-A4YF-01 20 54579031 54579031 G T CBLN4 Missense_Mutation p.A66E 0.10 deleterious(0.01) benign(0.408) TCGA-NJ-A4YF-01 20 55088422 55088422 G T RTFDC1 Nonsense_Mutation p.E177* 0.21 TCGA-NJ-A4YF-01 20 56136537 56136537 C A PCK1 Missense_Mutation p.P24T 0.18 tolerated(0.12) benign(0.004) TCGA-NJ-A4YF-01 20 60793637 60793637 C A HRH3 Silent p.L109L 0.09 TCGA-NJ-A4YF-01 20 61528088 61528088 C - DIDO1 Frame_Shift_Del p.A617Hfs*22 0.17 TCGA-NJ-A4YF-01 20 62172680 62172680 G T SRMS Missense_Mutation p.S383R 0.78 tolerated(1) benign(0.166) TCGA-NJ-A4YF-01 20 62836948 62836948 C A MYT1 Silent p.G64G 0.10 TCGA-NJ-A4YF-01 20 9496668 9496668 A G LAMP5 Missense_Mutation p.I87V 0.73 tolerated(0.5) benign(0.014) TCGA-NJ-A4YF-01 21 11038823 11038823 G T BAGE2 RNA 0.26 TCGA-NJ-A4YF-01 21 19713829 19713829 C A TMPRSS15 Missense_Mutation p.D489Y 0.30 deleterious(0) probably_damaging(0.992) TCGA-NJ-A4YF-01 21 27945232 27945232 G A CYYR1 Missense_Mutation p.P10S 0.18 tolerated_low_confidence(0.29) benign(0) TCGA-NJ-A4YF-01 21 27945326 27945326 A T CYYR1 5'UTR 0.17 TCGA-NJ-A4YF-01 21 32185289 32185289 G T KRTAP8-1 3'UTR 0.42 TCGA-NJ-A4YF-01 21 35742928 35742928 C A KCNE2 Missense_Mutation p.L51M 0.20 tolerated(0.07) probably_damaging(0.996) TCGA-NJ-A4YF-01 21 38538595 38538595 A C TTC3 Missense_Mutation p.Q1360P 0.17 tolerated(0.27) benign(0) TCGA-NJ-A4YF-01 21 39671519 39671520 CT - KCNJ15 Frame_Shift_Del p.L114Hfs*43 0.33 TCGA-NJ-A4YF-01 21 40552326 40552326 C A PSMG1 Missense_Mutation p.W93L 0.21 tolerated(0.07) probably_damaging(1) TCGA-NJ-A4YF-01 21 43309134 43309134 C A C2CD2 3'UTR 0.30 TCGA-NJ-A4YF-01 21 45994212 45994212 C A KRTAP10-4 Missense_Mutation p.P193T 0.27 deleterious(0.02) unknown(0) TCGA-NJ-A4YF-01 21 47556894 47556894 C A FTCD Intron 0.11 TCGA-NJ-A4YF-01 22 17443639 17443639 C A GAB4 Missense_Mutation p.R570M 0.21 deleterious(0) possibly_damaging(0.831) TCGA-NJ-A4YF-01 22 18846096 18846096 G C BCRP7 RNA 0.09 TCGA-NJ-A4YF-01 22 20080404 20080404 G T DGCR8 Missense_Mutation p.S560I 0.47 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YF-01 22 21363243 21363243 G C AC002472.1 5'Flank 0.31 TCGA-NJ-A4YF-01 22 22842223 22842223 C A ZNF280B Missense_Mutation p.V501F 0.49 deleterious(0) possibly_damaging(0.835) TCGA-NJ-A4YF-01 22 22868752 22868752 G T ZNF280A Nonsense_Mutation p.Y401* 0.18 TCGA-NJ-A4YF-01 22 23603638 23603638 G T BCR Nonsense_Mutation p.E555* 0.18 TCGA-NJ-A4YF-01 22 26164180 26164180 T A MYO18B Silent p.P99P 0.21 TCGA-NJ-A4YF-01 22 40696557 40696557 G C TNRC6B Silent p.L1269L 0.42 TCGA-NJ-A4YF-01 22 42322154 42322154 C A TNFRSF13C Silent p.R106R 0.24 TCGA-NJ-A4YF-01 2 102448264 102448264 C A MAP4K4 Missense_Mutation p.P197H 0.58 deleterious_low_confidence(0) unknown(0) TCGA-NJ-A4YF-01 2 106497818 106497818 G A NCK2 Silent p.R87R 0.34 TCGA-NJ-A4YF-01 2 106497819 106497819 G T NCK2 Missense_Mutation p.D88Y 0.34 deleterious(0.01) possibly_damaging(0.736) TCGA-NJ-A4YF-01 2 128409268 128409268 C A GPR17 Missense_Mutation p.P348Q 0.14 tolerated(0.63) benign(0.214) TCGA-NJ-A4YF-01 2 137814207 137814207 C T THSD7B Silent p.Y119Y 0.16 TCGA-NJ-A4YF-01 2 141128284 141128284 T A LRP1B Missense_Mutation p.E3668V 0.39 benign(0.001) TCGA-NJ-A4YF-01 2 141283850 141283850 T A LRP1B Missense_Mutation p.N2611I 0.50 possibly_damaging(0.904) TCGA-NJ-A4YF-01 2 141283880 141283880 C A LRP1B Missense_Mutation p.G2601V 0.30 probably_damaging(0.988) TCGA-NJ-A4YF-01 2 141680702 141680702 C A LRP1B Missense_Mutation p.A1051S 0.54 probably_damaging(0.954) TCGA-NJ-A4YF-01 2 152314448 152314448 G T RIF1 Silent p.V942V 0.58 TCGA-NJ-A4YF-01 2 152320733 152320733 A C RIF1 Missense_Mutation p.K1567Q 0.21 deleterious(0) probably_damaging(0.992) TCGA-NJ-A4YF-01 2 152507232 152507232 C A NEB Silent p.V2361V 0.65 TCGA-NJ-A4YF-01 2 1544421 1544421 C T TPO Missense_Mutation p.P892S 0.20 tolerated_low_confidence(0.44) benign(0.001) TCGA-NJ-A4YF-01 2 162799314 162799314 G T SLC4A10 Silent p.V670V 0.67 TCGA-NJ-A4YF-01 2 166183488 166183488 A T SCN2A Missense_Mutation p.M715L 0.62 tolerated(0.79) benign(0.023) TCGA-NJ-A4YF-01 2 166740437 166740437 G A TTC21B Missense_Mutation p.A1184V 0.57 tolerated(0.08) benign(0.149) TCGA-NJ-A4YF-01 2 168100032 168100032 G T XIRP2 Silent p.V710V 0.64 TCGA-NJ-A4YF-01 2 171260812 171260812 G T MYO3B Missense_Mutation p.R778L 0.56 deleterious(0.01) benign(0.055) TCGA-NJ-A4YF-01 2 179594871 179594871 G T TTN Missense_Mutation p.L6086I 0.38 TCGA-NJ-A4YF-01 2 186670281 186670281 C A FSIP2 Silent p.T5505T 0.43 TCGA-NJ-A4YF-01 2 188228229 188228229 C G CALCRL Missense_Mutation p.K167N 0.09 deleterious(0) probably_damaging(0.956) TCGA-NJ-A4YF-01 2 189875080 189875080 G A COL3A1 Missense_Mutation p.G1334S 0.51 unknown(0) TCGA-NJ-A4YF-01 2 197674167 197674167 C A C2orf66 5'UTR 0.69 TCGA-NJ-A4YF-01 2 202698678 202698678 C A CDK15 Silent p.L238L 0.62 TCGA-NJ-A4YF-01 2 204735475 204735475 G T CTLA4 Silent p.G92G 0.39 TCGA-NJ-A4YF-01 2 205986661 205986661 G A PARD3B Missense_Mutation p.D385N 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-NJ-A4YF-01 2 206023588 206023588 G T PARD3B Intron 0.71 TCGA-NJ-A4YF-01 2 215843578 215843578 C A ABCA12 Missense_Mutation p.G1643C 0.64 deleterious(0.01) possibly_damaging(0.572) TCGA-NJ-A4YF-01 2 219267782 219267782 G T CTDSP1 Missense_Mutation p.V135L 0.66 deleterious(0.03) possibly_damaging(0.834) TCGA-NJ-A4YF-01 2 219301287 219301287 C G VIL1 Missense_Mutation p.P637A 0.33 tolerated(0.52) benign(0.003) TCGA-NJ-A4YF-01 2 219886553 219886553 G A CCDC108 Missense_Mutation p.R1027C 0.15 tolerated(0.14) benign(0.048) TCGA-NJ-A4YF-01 2 220161725 220161725 G T PTPRN Missense_Mutation p.H740N 0.60 tolerated(0.54) benign(0.001) TCGA-NJ-A4YF-01 2 222301267 222301267 C A EPHA4 Missense_Mutation p.G733V 0.57 deleterious(0.01) probably_damaging(0.999) TCGA-NJ-A4YF-01 2 225266487 225266487 G T FAM124B 5'UTR 0.53 TCGA-NJ-A4YF-01 2 232263211 232263211 G T B3GNT7 Nonsense_Mutation p.E261* 0.24 TCGA-NJ-A4YF-01 2 233246361 233246361 C A ALPP Silent p.A488A 0.58 TCGA-NJ-A4YF-01 2 234862640 234862640 C A TRPM8 Missense_Mutation p.A407D 0.10 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YF-01 2 242140752 242140752 C T ANO7 Silent p.S252S 0.41 TCGA-NJ-A4YF-01 2 24345376 24345376 G A PFN4 Silent p.D10D 0.65 TCGA-NJ-A4YF-01 2 24929831 24929831 G A NCOA1 Missense_Mutation p.A498T 0.57 deleterious(0.04) benign(0.002) TCGA-NJ-A4YF-01 2 27706463 27706463 C A IFT172 Missense_Mutation p.V156L 0.21 tolerated(0.07) benign(0.247) TCGA-NJ-A4YF-01 2 29011673 29011673 C G PPP1CB Missense_Mutation p.Q248E 0.13 deleterious_low_confidence(0.04) benign(0.031) TCGA-NJ-A4YF-01 2 43571345 43571345 G T THADA Missense_Mutation p.S1420Y 0.61 deleterious(0.04) benign(0.342) TCGA-NJ-A4YF-01 2 79347994 79347994 C A REG1A Missense_Mutation p.Q3K 0.43 tolerated(0.33) benign(0.042) TCGA-NJ-A4YF-01 2 80835441 80835441 G T CTNNA2 Missense_Mutation p.G810W 0.18 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YF-01 2 89521289 89521289 G A IGKV2-28 Missense_Mutation p.P84S 0.76 tolerated(0.13) benign(0.217) TCGA-NJ-A4YF-01 2 89999461 89999461 G T IGKV2D-28 Missense_Mutation p.S88I 0.54 deleterious(0.04) benign(0.35) TCGA-NJ-A4YF-01 2 90108971 90108971 C T IGKV6D-41 Missense_Mutation p.P79L 0.61 deleterious(0) possibly_damaging(0.879) TCGA-NJ-A4YF-01 2 90122045 90122045 G C IGKV1D-17 Missense_Mutation p.G88A 0.29 deleterious(0) possibly_damaging(0.898) TCGA-NJ-A4YF-01 2 91843514 91843514 G T AC027612.6 RNA 0.17 TCGA-NJ-A4YF-01 2 98458307 98458307 T C TMEM131 Missense_Mutation p.I232V 0.44 deleterious(0.02) probably_damaging(0.992) TCGA-NJ-A4YF-01 2 99977666 99977666 A G EIF5B Missense_Mutation p.Q101R 0.18 unknown(0) TCGA-NJ-A4YF-01 3 108189630 108189630 G T MYH15 Missense_Mutation p.A453E 0.35 tolerated(0.18) possibly_damaging(0.874) TCGA-NJ-A4YF-01 3 108476056 108476056 G T RETNLB 5'UTR 0.38 TCGA-NJ-A4YF-01 3 112357060 112357060 T A CCDC80 Missense_Mutation p.S565C 0.34 deleterious(0) possibly_damaging(0.72) TCGA-NJ-A4YF-01 3 11348451 11348451 A G ATG7 Missense_Mutation p.I84V 0.54 tolerated(0.55) benign(0) TCGA-NJ-A4YF-01 3 113850215 113850215 C A DRD3 Silent p.L252L 0.28 TCGA-NJ-A4YF-01 3 119367340 119367340 C A POPDC2 Missense_Mutation p.R259L 0.31 tolerated(0.14) benign(0.261) TCGA-NJ-A4YF-01 3 120121657 120121657 T A FSTL1 Missense_Mutation p.D268V 0.31 deleterious(0) benign(0.235) TCGA-NJ-A4YF-01 3 121305341 121305341 C A ARGFX Missense_Mutation p.A281E 0.25 tolerated(0.44) benign(0.002) TCGA-NJ-A4YF-01 3 121395775 121395775 G A GOLGB1 Nonsense_Mutation p.Q3048* 0.18 TCGA-NJ-A4YF-01 3 121435856 121435856 G A GOLGB1 Missense_Mutation p.S339F 0.31 probably_damaging(0.978) TCGA-NJ-A4YF-01 3 124207162 124207162 G C KALRN Missense_Mutation p.G1464R 0.35 deleterious(0) possibly_damaging(0.792) TCGA-NJ-A4YF-01 3 124378304 124378304 G A KALRN Silent p.K163K 0.19 TCGA-NJ-A4YF-01 3 127327830 127327830 C A MCM2 Silent p.I464I 0.37 TCGA-NJ-A4YF-01 3 127327831 127327831 A T MCM2 Missense_Mutation p.T465S 0.37 tolerated(0.22) benign(0.016) TCGA-NJ-A4YF-01 3 128181856 128181860 CCGCC GCGCAA DNAJB8 Frame_Shift_Ins p.G77Lfs*19 0.27 TCGA-NJ-A4YF-01 3 130799425 130799425 A G NEK11 Missense_Mutation p.Y110C 0.13 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YF-01 3 134851773 134851773 C T EPHB1 Silent p.I393I 0.27 TCGA-NJ-A4YF-01 3 140401978 140401978 G T TRIM42 Missense_Mutation p.S339I 0.14 deleterious(0.01) possibly_damaging(0.901) TCGA-NJ-A4YF-01 3 146173138 146173138 C A PLSCR2 Missense_Mutation p.G143V 0.35 deleterious(0) probably_damaging(0.993) TCGA-NJ-A4YF-01 3 146307519 146307519 G T PLSCR5 Missense_Mutation p.A233D 0.40 deleterious(0) probably_damaging(0.933) TCGA-NJ-A4YF-01 3 148727066 148727066 G T GYG1 Missense_Mutation p.G162V 0.32 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YF-01 3 151475552 151475552 C A AADACL2 3'UTR 0.33 TCGA-NJ-A4YF-01 3 164766972 164766972 C A SI Missense_Mutation p.G553V 0.18 deleterious(0.05) possibly_damaging(0.659) TCGA-NJ-A4YF-01 3 169540380 169540380 C A LRRIQ4 Missense_Mutation p.P224H 0.39 tolerated(0.47) benign(0.209) TCGA-NJ-A4YF-01 3 169540381 169540381 C A LRRIQ4 Silent p.P224P 0.39 TCGA-NJ-A4YF-01 3 170201230 170201230 C A SLC7A14 Missense_Mutation p.G330W 0.32 deleterious(0) probably_damaging(0.992) TCGA-NJ-A4YF-01 3 172065050 172065050 G T FNDC3B Nonsense_Mutation p.G805* 0.09 TCGA-NJ-A4YF-01 3 179615952 179615952 G T PEX5L Missense_Mutation p.P59H 0.29 deleterious_low_confidence(0) unknown(0) TCGA-NJ-A4YF-01 3 184040239 184040239 G C EIF4G1 Splice_Site p.X543_splice 0.45 TCGA-NJ-A4YF-01 3 184801030 184801030 C T C3orf70 Missense_Mutation p.S173N 0.19 tolerated_low_confidence(0.25) benign(0.006) TCGA-NJ-A4YF-01 3 185212434 185212434 T A TMEM41A Missense_Mutation p.Q184L 0.27 tolerated(0.66) benign(0.001) TCGA-NJ-A4YF-01 3 186395251 186395251 C A HRG Missense_Mutation p.P386H 0.40 tolerated(0.07) possibly_damaging(0.893) TCGA-NJ-A4YF-01 3 186395473 186395473 G T HRG Missense_Mutation p.R460L 0.45 deleterious(0) possibly_damaging(0.902) TCGA-NJ-A4YF-01 3 197427824 197427824 C A KIAA0226 Missense_Mutation p.W307C 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.566) TCGA-NJ-A4YF-01 3 38645254 38645254 G T SCN5A Silent p.S613S 0.34 TCGA-NJ-A4YF-01 3 45837889 45837889 C A SLC6A20 Missense_Mutation p.W8L 0.29 deleterious(0) possibly_damaging(0.539) TCGA-NJ-A4YF-01 3 45972732 45972732 C A FYCO1 Missense_Mutation p.G1361V 0.45 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 3 58728174 58728174 C A C3orf67 3'UTR 0.54 TCGA-NJ-A4YF-01 3 65342344 65342344 G A MAGI1 Silent p.S1366S 0.46 TCGA-NJ-A4YF-01 3 69990455 69990455 G T MITF Missense_Mutation p.M245I 0.21 tolerated(0.74) benign(0.012) TCGA-NJ-A4YF-01 3 97198180 97198180 G T EPHA6 Missense_Mutation p.K682N 0.39 tolerated(0.06) benign(0.026) TCGA-NJ-A4YF-01 4 100341940 100341940 C A ADH7 Missense_Mutation p.G212V 0.42 deleterious(0) probably_damaging(0.924) TCGA-NJ-A4YF-01 4 102750973 102750973 A G BANK1 Missense_Mutation p.K27E 0.33 deleterious(0.04) benign(0.359) TCGA-NJ-A4YF-01 4 106157960 106157960 G C TET2 Missense_Mutation p.W954S 0.34 deleterious(0.04) possibly_damaging(0.889) TCGA-NJ-A4YF-01 4 114386723 114386723 C T CAMK2D Silent p.L357L 0.23 TCGA-NJ-A4YF-01 4 1165770 1165770 C T SPON2 Silent p.G30G 0.31 TCGA-NJ-A4YF-01 4 119444510 119444510 C G CEP170P1 RNA 0.21 TCGA-NJ-A4YF-01 4 145567970 145567970 T C HHIP Missense_Mutation p.L48P 0.21 tolerated(0.06) probably_damaging(0.967) TCGA-NJ-A4YF-01 4 146696969 146696969 C G ZNF827 Missense_Mutation p.D889H 0.25 tolerated(0.18) possibly_damaging(0.894) TCGA-NJ-A4YF-01 4 155505263 155505263 C G FGA 3'UTR 0.18 TCGA-NJ-A4YF-01 4 178355548 178355548 C A AGA Missense_Mutation p.R265L 0.24 deleterious(0) probably_damaging(0.997) TCGA-NJ-A4YF-01 4 178358560 178358560 A T AGA Silent p.I207I 0.27 TCGA-NJ-A4YF-01 4 184240489 184240489 G T CLDN22 3'UTR 0.38 TCGA-NJ-A4YF-01 4 186508724 186508724 C T SORBS2 3'UTR 0.36 TCGA-NJ-A4YF-01 4 39448103 39448103 T C KLB Missense_Mutation p.L586P 0.18 deleterious(0) probably_damaging(0.988) TCGA-NJ-A4YF-01 4 47667250 47667250 C G CORIN Missense_Mutation p.C463S 0.21 deleterious(0) probably_damaging(0.928) TCGA-NJ-A4YF-01 4 47850169 47850169 C G NFXL1 3'UTR 0.32 TCGA-NJ-A4YF-01 4 54232062 54232062 T A SCFD2 Missense_Mutation p.Q16L 0.26 tolerated(0.13) benign(0.002) TCGA-NJ-A4YF-01 4 5624282 5624282 C G EVC2 Missense_Mutation p.W828S 0.13 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YF-01 4 6087184 6087184 G T JAKMIP1 Missense_Mutation p.P266H 0.15 tolerated(0.06) possibly_damaging(0.774) TCGA-NJ-A4YF-01 4 62849274 62849274 G T LPHN3 Silent p.V995V 0.19 TCGA-NJ-A4YF-01 4 65147232 65147232 C A TECRL Missense_Mutation p.W293L 0.32 tolerated(0.21) probably_damaging(0.998) TCGA-NJ-A4YF-01 4 69313180 69313180 C A TMPRSS11E 5'UTR 0.24 TCGA-NJ-A4YF-01 4 70346450 70346450 G T UGT2B4 Missense_Mutation p.L497M 0.21 deleterious(0.02) probably_damaging(1) TCGA-NJ-A4YF-01 4 71232547 71232547 C A SMR3A Missense_Mutation p.P81T 0.19 tolerated_low_confidence(0.52) unknown(0) TCGA-NJ-A4YF-01 4 71255618 71255618 C A SMR3B 3'UTR 0.32 TCGA-NJ-A4YF-01 4 71508513 71508513 C A ENAM Missense_Mutation p.P457H 0.31 deleterious(0) probably_damaging(0.978) TCGA-NJ-A4YF-01 4 7435456 7435456 G C PSAPL1 Missense_Mutation p.S384C 0.37 deleterious(0.04) possibly_damaging(0.57) TCGA-NJ-A4YF-01 4 74719786 74719786 G T PF4V1 Missense_Mutation p.D88Y 0.22 deleterious(0) probably_damaging(0.995) TCGA-NJ-A4YF-01 4 77274333 77274333 T A CCDC158 Silent p.R796R 0.26 TCGA-NJ-A4YF-01 4 84457653 84457653 G T AGPAT9 Intron 0.56 TCGA-NJ-A4YF-01 4 8582790 8582790 G T GPR78 Silent p.L27L 0.25 TCGA-NJ-A4YF-01 4 87680206 87680206 C T PTPN13 Missense_Mutation p.P1178L 0.17 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 4 88989137 88989137 G A PKD2 Missense_Mutation p.D816N 0.17 tolerated(0.1) possibly_damaging(0.678) TCGA-NJ-A4YF-01 4 94750372 94750372 G T ATOH1 Missense_Mutation p.V99L 0.25 tolerated(0.08) benign(0.001) TCGA-NJ-A4YF-01 5 106762991 106762991 A G EFNA5 Silent p.S115S 0.18 TCGA-NJ-A4YF-01 5 11159742 11159742 C A CTNND2 Missense_Mutation p.R702L 0.12 deleterious(0.02) benign(0.131) TCGA-NJ-A4YF-01 5 118506226 118506226 G T DMXL1 Missense_Mutation p.A1914S 0.28 tolerated(1) benign(0.001) TCGA-NJ-A4YF-01 5 132232265 132232265 C G AFF4 Missense_Mutation p.S686T 0.28 tolerated(0.73) possibly_damaging(0.781) TCGA-NJ-A4YF-01 5 140024738 140024738 C T TMCO6 3'UTR 0.21 TCGA-NJ-A4YF-01 5 140202957 140202957 C A PCDHA5 Missense_Mutation p.Q533K 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.878) TCGA-NJ-A4YF-01 5 140590113 140590113 C A PCDHB12 Missense_Mutation p.A545E 0.26 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-NJ-A4YF-01 5 140735382 140735382 G T PCDHGA4 Missense_Mutation p.E205D 0.26 deleterious_low_confidence(0.03) benign(0.382) TCGA-NJ-A4YF-01 5 140751466 140751466 C T PCDHGB3 Missense_Mutation p.S502L 0.61 tolerated(0.09) possibly_damaging(0.494) TCGA-NJ-A4YF-01 5 140768418 140768418 G A PCDHGB4 Missense_Mutation p.G323R 0.22 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 5 147020382 147020382 G T JAKMIP2 Missense_Mutation p.P429H 0.14 tolerated(0.22) benign(0) TCGA-NJ-A4YF-01 5 149751647 149751647 C T TCOF1 Missense_Mutation p.P240S 0.10 deleterious(0.01) benign(0.041) TCGA-NJ-A4YF-01 5 150704958 150704958 G T SLC36A2 Missense_Mutation p.S300Y 0.14 tolerated(1) benign(0.002) TCGA-NJ-A4YF-01 5 150924311 150924311 G A FAT2 Missense_Mutation p.S2126L 0.15 possibly_damaging(0.861) TCGA-NJ-A4YF-01 5 159830426 159830426 T C SLU7 Missense_Mutation p.M543V 0.28 tolerated(0.11) benign(0.051) TCGA-NJ-A4YF-01 5 16067503 16067503 G C MARCH11 3'UTR 0.45 TCGA-NJ-A4YF-01 5 16465448 16465448 C A ZNF622 Missense_Mutation p.M109I 0.12 deleterious(0.01) benign(0.064) TCGA-NJ-A4YF-01 5 167553868 167553868 C T TENM2 Silent p.R773R 0.18 TCGA-NJ-A4YF-01 5 177690215 177690215 G T COL23A1 Silent p.G211G 0.17 TCGA-NJ-A4YF-01 5 178559281 178559281 C G ADAMTS2 Missense_Mutation p.G747A 0.47 deleterious(0) probably_damaging(0.997) TCGA-NJ-A4YF-01 5 19839107 19839107 T C CDH18 5'UTR 0.16 TCGA-NJ-A4YF-01 5 22078634 22078634 C G CDH12 Missense_Mutation p.R51P 0.30 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YF-01 5 33461299 33461299 C G TARS Missense_Mutation p.R517G 0.39 deleterious(0.01) benign(0.112) TCGA-NJ-A4YF-01 5 33944929 33944929 C A SLC45A2 Missense_Mutation p.G473C 0.60 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 5 38463032 38463032 A T EGFLAM Missense_Mutation p.T940S 0.40 tolerated(0.05) probably_damaging(0.994) TCGA-NJ-A4YF-01 5 41004914 41004914 G T MROH2B Silent p.R1325R 0.10 TCGA-NJ-A4YF-01 5 63256860 63256860 C T HTR1A Silent p.T229T 0.46 TCGA-NJ-A4YF-01 5 6337373 6337373 C A CTD-2324F15.2 RNA 0.34 TCGA-NJ-A4YF-01 5 63803677 63803677 C A RGS7BP Missense_Mutation p.A102E 0.61 deleterious_low_confidence(0.01) possibly_damaging(0.765) TCGA-NJ-A4YF-01 5 71479622 71479622 C A MAP1B Silent p.I113I 0.57 TCGA-NJ-A4YF-01 5 7520936 7520936 C A ADCY2 Missense_Mutation p.T165N 0.18 deleterious(0.01) possibly_damaging(0.564) TCGA-NJ-A4YF-01 5 79616057 79616057 C T SPZ1 Missense_Mutation p.A8V 0.29 tolerated(0.1) possibly_damaging(0.706) TCGA-NJ-A4YF-01 5 80369232 80369232 C A RASGRF2 Missense_Mutation p.P283H 0.20 deleterious(0) benign(0.211) TCGA-NJ-A4YF-01 5 82816596 82816596 C G VCAN Nonsense_Mutation p.S824* 0.35 TCGA-NJ-A4YF-01 6 110429812 110429812 C A WASF1 Missense_Mutation p.R114L 0.63 deleterious(0) unknown(0) TCGA-NJ-A4YF-01 6 116442406 116442406 C - COL10A1 Frame_Shift_Del p.P293Qfs*14 0.29 TCGA-NJ-A4YF-01 6 130762062 130762062 C A TMEM200A Silent p.S165S 0.26 TCGA-NJ-A4YF-01 6 131944587 131944587 G A MED23 Silent p.S100S 0.25 TCGA-NJ-A4YF-01 6 132195453 132195453 T A ENPP1 Silent p.S537S 0.48 TCGA-NJ-A4YF-01 6 133091301 133091301 G A SLC18B1 3'UTR 0.52 TCGA-NJ-A4YF-01 6 152671408 152671408 T C SYNE1 Silent p.Q3932Q 0.48 TCGA-NJ-A4YF-01 6 155743913 155743913 C A NOX3 Missense_Mutation p.G408V 0.45 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 6 157528210 157528210 A T ARID1B Missense_Mutation p.I1979F 0.50 probably_damaging(0.983) TCGA-NJ-A4YF-01 6 161010584 161010584 C A LPA Splice_Site p.X1316_splice 0.41 TCGA-NJ-A4YF-01 6 161032716 161032716 G T LPA Nonsense_Mutation p.Y827* 0.20 TCGA-NJ-A4YF-01 6 163510298 163510298 G T PACRG Missense_Mutation p.L157F 0.46 deleterious(0.01) probably_damaging(0.942) TCGA-NJ-A4YF-01 6 167550923 167550923 C A CCR6 3'UTR 0.20 TCGA-NJ-A4YF-01 6 20131385 20131385 C A MBOAT1 Missense_Mutation p.Q155H 0.18 deleterious(0.05) benign(0.232) TCGA-NJ-A4YF-01 6 26250504 26250504 C G HIST1H3F Silent p.L110L 0.42 TCGA-NJ-A4YF-01 6 26598247 26598247 G T ABT1 Missense_Mutation p.R116L 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-NJ-A4YF-01 6 27222623 27222623 T C PRSS16 Silent p.P434P 0.15 TCGA-NJ-A4YF-01 6 27835112 27835112 T C HIST1H1B Missense_Mutation p.K66E 0.41 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YF-01 6 28964137 28964137 G - ZNF311 Frame_Shift_Del p.C215Afs*14 0.12 TCGA-NJ-A4YF-01 6 29639150 29639150 C T MOG Intron 0.23 TCGA-NJ-A4YF-01 6 30121521 30121521 C A TRIM10 3'UTR 0.17 TCGA-NJ-A4YF-01 6 31112828 31112828 C A CCHCR1 Silent p.L633L 0.41 TCGA-NJ-A4YF-01 6 31827583 31827583 G T NEU1 Silent p.P387P 0.05 TCGA-NJ-A4YF-01 6 35704940 35704940 G T ARMC12 Missense_Mutation p.V19F 0.33 deleterious(0) possibly_damaging(0.847) TCGA-NJ-A4YF-01 6 36076332 36076332 A G MAPK14 3'UTR 0.33 TCGA-NJ-A4YF-01 6 43222304 43222304 G T TTBK1 Missense_Mutation p.R164M 0.18 probably_damaging(0.997) TCGA-NJ-A4YF-01 6 43310508 43310509 - A ZNF318 Frame_Shift_Ins p.Y1061Lfs*2 0.16 TCGA-NJ-A4YF-01 6 47649821 47649821 G C GPR111 Missense_Mutation p.S509T 0.14 tolerated(0.28) possibly_damaging(0.559) TCGA-NJ-A4YF-01 6 49580203 49580203 G T RHAG Silent p.G284G 0.14 TCGA-NJ-A4YF-01 6 49753711 49753711 C T PGK2 Missense_Mutation p.G397D 0.37 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 6 51875189 51875189 G T PKHD1 Missense_Mutation p.A1890E 0.16 deleterious(0) probably_damaging(0.95) TCGA-NJ-A4YF-01 6 51890056 51890056 C A PKHD1 Missense_Mutation p.V1518L 0.41 deleterious(0) possibly_damaging(0.803) TCGA-NJ-A4YF-01 6 52052535 52052535 G T IL17A Silent p.R54R 0.15 TCGA-NJ-A4YF-01 6 53883830 53883830 G C MLIP Missense_Mutation p.E2Q 0.10 deleterious(0.01) possibly_damaging(0.634) TCGA-NJ-A4YF-01 6 56471396 56471396 C A DST Intron 0.45 TCGA-NJ-A4YF-01 6 6175039 6175039 G T F13A1 Silent p.L507L 0.37 TCGA-NJ-A4YF-01 6 6175041 6175041 G T F13A1 Missense_Mutation p.L507I 0.37 tolerated(0.28) benign(0.001) TCGA-NJ-A4YF-01 6 73023342 73023342 C T RIMS1 Missense_Mutation p.S1366L 0.59 deleterious(0) probably_damaging(0.992) TCGA-NJ-A4YF-01 6 74407141 74407141 A T CD109 Silent p.T31T 0.47 TCGA-NJ-A4YF-01 6 76376476 76376476 G T SENP6 Missense_Mutation p.R348I 0.22 tolerated(0.38) probably_damaging(0.996) TCGA-NJ-A4YF-01 6 78172176 78172176 G T HTR1B Silent p.T315T 0.22 TCGA-NJ-A4YF-01 6 89890145 89890145 C A GABRR1 Missense_Mutation p.V338F 0.53 deleterious(0.02) probably_damaging(0.997) TCGA-NJ-A4YF-01 7 100365576 100365576 C G ZAN Missense_Mutation p.S1661R 0.17 unknown(0) TCGA-NJ-A4YF-01 7 100771831 100771831 C A SERPINE1 Missense_Mutation p.R53S 0.34 tolerated(0.4) possibly_damaging(0.45) TCGA-NJ-A4YF-01 7 103206688 103206688 A G RELN Missense_Mutation p.I1640T 0.08 tolerated(0.41) benign(0.001) TCGA-NJ-A4YF-01 7 105182916 105182916 A C RINT1 Missense_Mutation p.E112A 0.17 tolerated(0.43) benign(0.009) TCGA-NJ-A4YF-01 7 120773890 120773890 G T CPED1 Nonsense_Mutation p.E531* 0.05 TCGA-NJ-A4YF-01 7 122338115 122338115 C A RNF133 Missense_Mutation p.W286C 0.32 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 7 126746692 126746692 C A GRM8 Silent p.V195V 0.11 TCGA-NJ-A4YF-01 7 128488646 128488646 G A FLNC Missense_Mutation p.D1538N 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-NJ-A4YF-01 7 136700532 136700532 C A CHRM2 Missense_Mutation p.T307K 0.16 tolerated(0.42) benign(0.008) TCGA-NJ-A4YF-01 7 138440503 138440503 G T ATP6V0A4 Nonsense_Mutation p.C249* 0.09 TCGA-NJ-A4YF-01 7 141443384 141443384 G T SSBP1 Missense_Mutation p.G37W 0.08 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YF-01 7 141954911 141954911 A T PRSS58 Missense_Mutation p.S134T 0.18 tolerated(0.32) benign(0.008) TCGA-NJ-A4YF-01 7 142099640 142099640 G T TRBV7-8 Nonsense_Mutation p.Y54* 0.18 TCGA-NJ-A4YF-01 7 142104539 142104539 G T TRBV6-9 Silent p.L5L 0.27 TCGA-NJ-A4YF-01 7 142168481 142168481 G T TRBV5-4 Missense_Mutation p.P81H 0.24 tolerated(0.05) benign(0) TCGA-NJ-A4YF-01 7 142168482 142168482 G T TRBV5-4 Missense_Mutation p.P81T 0.23 tolerated(0.07) benign(0.002) TCGA-NJ-A4YF-01 7 142334656 142334656 C A TRBV20-1 Silent p.I26I 0.25 TCGA-NJ-A4YF-01 7 142480036 142480036 G T PRSS3P2 RNA 0.16 TCGA-NJ-A4YF-01 7 142498876 142498876 G C TRBC2 Missense_Mutation p.E51D 0.12 deleterious(0.01) benign(0.234) TCGA-NJ-A4YF-01 7 142499065 142499065 C A TRBC2 Silent p.A114A 0.12 TCGA-NJ-A4YF-01 7 142658955 142658955 C A KEL Missense_Mutation p.G3V 0.38 deleterious_low_confidence(0.01) benign(0.121) TCGA-NJ-A4YF-01 7 143701143 143701143 T A OR6B1 Silent p.P18P 0.36 TCGA-NJ-A4YF-01 7 143807627 143807627 C G OR2A2 Missense_Mutation p.L318V 0.12 tolerated_low_confidence(1) possibly_damaging(0.636) TCGA-NJ-A4YF-01 7 149129869 149129869 C A ZNF777 Missense_Mutation p.E498D 0.10 tolerated(0.27) benign(0.002) TCGA-NJ-A4YF-01 7 149423124 149423124 G T KRBA1 Missense_Mutation p.G483W 0.24 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YF-01 7 157926564 157926564 T A PTPRN2 Missense_Mutation p.K454I 0.31 deleterious(0) benign(0.393) TCGA-NJ-A4YF-01 7 20682814 20682814 C G ABCB5 Missense_Mutation p.L108V 0.16 tolerated(0.09) benign(0.126) TCGA-NJ-A4YF-01 7 23823249 23823249 G A STK31 Silent p.L705L 0.20 TCGA-NJ-A4YF-01 7 2577951 2577951 T A BRAT1 Missense_Mutation p.R740W 0.22 deleterious(0.02) benign(0.267) TCGA-NJ-A4YF-01 7 27150147 27150147 G C HOXA3 Missense_Mutation p.A38G 0.32 tolerated(0.46) benign(0.258) TCGA-NJ-A4YF-01 7 27194648 27194648 G A HOXA7 Silent p.D191D 0.18 TCGA-NJ-A4YF-01 7 2946221 2946221 G C CARD11 3'UTR 0.29 TCGA-NJ-A4YF-01 7 2959200 2959200 C G CARD11 Silent p.S772S 0.13 TCGA-NJ-A4YF-01 7 32209467 32209467 G T PDE1C Missense_Mutation p.P80T 0.13 tolerated(0.72) possibly_damaging(0.796) TCGA-NJ-A4YF-01 7 36438782 36438782 G T ANLN Missense_Mutation p.E89D 0.20 tolerated(0.46) benign(0.389) TCGA-NJ-A4YF-01 7 37780137 37780137 C G GPR141 Missense_Mutation p.R48G 0.29 tolerated(0.07) probably_damaging(0.913) TCGA-NJ-A4YF-01 7 37896883 37896883 C A NME8 Missense_Mutation p.A69D 0.22 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YF-01 7 4091284 4091284 G T SDK1 Silent p.P911P 0.24 TCGA-NJ-A4YF-01 7 4169604 4169604 C G SDK1 Missense_Mutation p.T1335R 0.20 deleterious(0.02) benign(0.386) TCGA-NJ-A4YF-01 7 43590049 43590049 G C HECW1 Silent p.T1418T 0.27 TCGA-NJ-A4YF-01 7 44838863 44838863 C T PPIA Silent p.V29V 0.32 TCGA-NJ-A4YF-01 7 45725604 45725604 C - ADCY1 Frame_Shift_Del p.L707Wfs*35 0.30 TCGA-NJ-A4YF-01 7 48015209 48015209 C A HUS1 Splice_Site p.X180_splice 0.23 TCGA-NJ-A4YF-01 7 48312683 48312683 G T ABCA13 Missense_Mutation p.K1140N 0.22 benign(0.05) TCGA-NJ-A4YF-01 7 49842391 49842391 G T VWC2 Missense_Mutation p.D261Y 0.40 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 7 57188112 57188112 G T ZNF479 Missense_Mutation p.S337Y 0.19 tolerated(0.15) benign(0.247) TCGA-NJ-A4YF-01 7 57509912 57509912 G T ZNF716 5'UTR 0.24 TCGA-NJ-A4YF-01 7 57529240 57529240 G T ZNF716 Missense_Mutation p.G358V 0.36 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 7 75185334 75185334 G A HIP1 Missense_Mutation p.T608I 0.28 tolerated(0.16) benign(0.05) TCGA-NJ-A4YF-01 7 78636412 78636412 C T MAGI2 Missense_Mutation p.V138M 0.09 deleterious(0.03) possibly_damaging(0.837) TCGA-NJ-A4YF-01 7 81334788 81334788 C A HGF Missense_Mutation p.S643I 0.28 deleterious(0.03) benign(0.156) TCGA-NJ-A4YF-01 7 81381531 81381531 C A HGF Missense_Mutation p.C177F 0.28 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 7 82476511 82476511 T A PCLO Missense_Mutation p.E4569D 0.38 unknown(0) TCGA-NJ-A4YF-01 7 82580168 82580168 G - PCLO Frame_Shift_Del p.R3246Efs*18 0.18 TCGA-NJ-A4YF-01 7 87178756 87178756 G - ABCB1 Frame_Shift_Del p.L545Wfs*40 0.28 TCGA-NJ-A4YF-01 7 89906610 89906610 G T C7orf63 Missense_Mutation p.V373L 0.24 tolerated(0.81) benign(0.017) TCGA-NJ-A4YF-01 7 94937377 94937377 A T PON1 Missense_Mutation p.V215E 0.28 tolerated(0.25) benign(0.059) TCGA-NJ-A4YF-01 7 99097648 99097648 C A ZNF394 Silent p.A23A 0.14 TCGA-NJ-A4YF-01 8 100515177 100515177 A T VPS13B Missense_Mutation p.S1386C 0.11 deleterious(0.05) benign(0.215) TCGA-NJ-A4YF-01 8 103357641 103357641 C A UBR5 Missense_Mutation p.R290M 0.16 deleterious(0) probably_damaging(0.921) TCGA-NJ-A4YF-01 8 10470495 10470495 G T RP1L1 Silent p.G371G 0.51 TCGA-NJ-A4YF-01 8 104897683 104897683 G A RIMS2 Missense_Mutation p.E286K 0.26 deleterious_low_confidence(0.05) benign(0.138) TCGA-NJ-A4YF-01 8 105367346 105367346 T G DCSTAMP Missense_Mutation p.L424R 0.09 deleterious(0) possibly_damaging(0.885) TCGA-NJ-A4YF-01 8 106814594 106814594 G T ZFPM2 Missense_Mutation p.D762Y 0.30 deleterious(0.03) benign(0.305) TCGA-NJ-A4YF-01 8 110476589 110476589 C A PKHD1L1 Missense_Mutation p.H2510N 0.12 tolerated(0.57) benign(0.034) TCGA-NJ-A4YF-01 8 110980455 110980455 G T KCNV1 Silent p.T455T 0.13 TCGA-NJ-A4YF-01 8 113317028 113317028 G T CSMD3 Missense_Mutation p.H2730N 0.21 deleterious(0.03) benign(0.154) TCGA-NJ-A4YF-01 8 113484887 113484887 T A CSMD3 Silent p.P1776P 0.10 TCGA-NJ-A4YF-01 8 113504765 113504765 C G CSMD3 Missense_Mutation p.G1744A 0.16 deleterious(0.03) probably_damaging(0.964) TCGA-NJ-A4YF-01 8 113702182 113702182 G T CSMD3 Nonsense_Mutation p.C690* 0.10 TCGA-NJ-A4YF-01 8 113988350 113988350 G A CSMD3 Missense_Mutation p.S353F 0.29 deleterious(0.04) benign(0) TCGA-NJ-A4YF-01 8 121239570 121239570 G A COL14A1 Missense_Mutation p.V706M 0.12 deleterious(0.02) possibly_damaging(0.707) TCGA-NJ-A4YF-01 8 124265955 124265955 C A ZHX1 Silent p.G744G 0.21 TCGA-NJ-A4YF-01 8 125025887 125025887 T C FER1L6 Intron 0.18 TCGA-NJ-A4YF-01 8 125061921 125061921 C G FER1L6 Missense_Mutation p.P933R 0.08 deleterious(0) possibly_damaging(0.86) TCGA-NJ-A4YF-01 8 128429069 128429069 G T POU5F1B Missense_Mutation p.G320C 0.30 tolerated(0.07) probably_damaging(0.961) TCGA-NJ-A4YF-01 8 131128984 131128984 C T ASAP1 Silent p.Q668Q 0.07 TCGA-NJ-A4YF-01 8 131200412 131200412 G A ASAP1 Silent p.H141H 0.20 TCGA-NJ-A4YF-01 8 139155316 139155316 G C FAM135B Missense_Mutation p.R1193G 0.08 deleterious(0) probably_damaging(0.973) TCGA-NJ-A4YF-01 8 140630540 140630540 G T KCNK9 Silent p.T362T 0.36 TCGA-NJ-A4YF-01 8 142160995 142160995 C A DENND3 Silent p.I186I 0.09 TCGA-NJ-A4YF-01 8 145110063 145110063 C A OPLAH Missense_Mutation p.A760S 0.18 tolerated(1) benign(0.085) TCGA-NJ-A4YF-01 8 16921649 16921649 G T MICU3 Missense_Mutation p.E146D 0.51 deleterious(0) benign(0.104) TCGA-NJ-A4YF-01 8 2910053 2910053 G T CSMD1 Missense_Mutation p.Q2531K 0.36 benign(0.138) TCGA-NJ-A4YF-01 8 30550566 30550566 T A GSR Nonsense_Mutation p.R268* 0.24 TCGA-NJ-A4YF-01 8 32621290 32621290 G T NRG1 Silent p.P436P 0.26 TCGA-NJ-A4YF-01 8 37730441 37730441 C A RAB11FIP1 Nonsense_Mutation p.G627* 0.20 TCGA-NJ-A4YF-01 8 39645620 39645620 C T ADAM2 Missense_Mutation p.V265M 0.15 tolerated(0.48) benign(0.129) TCGA-NJ-A4YF-01 8 41585447 41585447 G A ANK1 Silent p.A135A 0.24 TCGA-NJ-A4YF-01 8 51465654 51465654 G T SNTG1 Missense_Mutation p.G242V 0.31 deleterious(0) probably_damaging(0.99) TCGA-NJ-A4YF-01 8 62212503 62212503 C A CLVS1 Silent p.R39R 0.11 TCGA-NJ-A4YF-01 8 65291727 65291727 C A MIR124-2 RNA 0.09 TCGA-NJ-A4YF-01 8 67047232 67047232 A T TRIM55 Nonsense_Mutation p.K117* 0.08 TCGA-NJ-A4YF-01 8 67476837 67476837 C A MYBL1 3'UTR 0.25 TCGA-NJ-A4YF-01 8 70981642 70981642 G T PRDM14 Missense_Mutation p.P152T 0.05 tolerated(0.15) benign(0.118) TCGA-NJ-A4YF-01 8 72951100 72951100 C G TRPA1 Silent p.T765T 0.09 TCGA-NJ-A4YF-01 8 72987567 72987567 C G TRPA1 Silent p.P26P 0.10 TCGA-NJ-A4YF-01 8 75898352 75898352 G T CRISPLD1 Missense_Mutation p.G44C 0.32 deleterious(0) possibly_damaging(0.653) TCGA-NJ-A4YF-01 8 77617551 77617551 G T ZFHX4 Missense_Mutation p.G410W 0.05 probably_damaging(0.984) TCGA-NJ-A4YF-01 8 77762481 77762481 G A ZFHX4 Missense_Mutation p.V1283M 0.16 possibly_damaging(0.781) TCGA-NJ-A4YF-01 8 77767855 77767855 G C ZFHX4 Missense_Mutation p.E2900Q 0.14 probably_damaging(0.992) TCGA-NJ-A4YF-01 8 87437524 87437524 G T WWP1 Missense_Mutation p.E378D 0.08 tolerated(0.15) probably_damaging(0.999) TCGA-NJ-A4YF-01 8 91962042 91962042 A T NECAB1 Missense_Mutation p.I290L 0.17 tolerated(0.15) benign(0.146) TCGA-NJ-A4YF-01 8 92401653 92401653 C T SLC26A7 Missense_Mutation p.S588F 0.08 deleterious(0.01) probably_damaging(0.917) TCGA-NJ-A4YF-01 8 94767281 94767281 G T TMEM67 Nonsense_Mutation p.E47* 0.23 TCGA-NJ-A4YF-01 8 94934695 94934695 A G PDP1 Silent p.R161R 0.13 TCGA-NJ-A4YF-01 8 95188810 95188810 T A CDH17 Missense_Mutation p.Q128L 0.20 deleterious(0.02) benign(0.111) TCGA-NJ-A4YF-01 8 96060747 96060747 A G NDUFAF6 Missense_Mutation p.I259M 0.13 deleterious(0.02) benign(0.392) TCGA-NJ-A4YF-01 8 99169904 99169904 G T POP1 Missense_Mutation p.R827L 0.18 deleterious(0.03) benign(0.246) TCGA-NJ-A4YF-01 9 104303159 104303159 G T RNF20 Missense_Mutation p.R177L 0.14 deleterious(0.03) benign(0) TCGA-NJ-A4YF-01 9 104335419 104335419 A T GRIN3A 3'UTR 0.30 TCGA-NJ-A4YF-01 9 106864430 106864430 G C SMC2 Missense_Mutation p.A276P 0.32 tolerated(0.07) possibly_damaging(0.637) TCGA-NJ-A4YF-01 9 107457517 107457517 C A OR13D1 Missense_Mutation p.T272N 0.20 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 9 108468021 108468021 G T TMEM38B Missense_Mutation p.A86S 0.32 deleterious(0) probably_damaging(0.994) TCGA-NJ-A4YF-01 9 111617915 111617915 C G ACTL7B Missense_Mutation p.G99A 0.08 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YF-01 9 112900794 112900794 C T PALM2-AKAP2 Silent p.S990S 0.29 TCGA-NJ-A4YF-01 9 112963077 112963077 C A C9orf152 3'UTR 0.68 TCGA-NJ-A4YF-01 9 120053686 120053686 C A ASTN2 Silent p.L183L 0.52 TCGA-NJ-A4YF-01 9 120475913 120475913 C A TLR4 Missense_Mutation p.L503I 0.23 tolerated(1) benign(0.262) TCGA-NJ-A4YF-01 9 121929239 121929239 C A BRINP1 3'UTR 0.62 TCGA-NJ-A4YF-01 9 123367348 123367348 T C MEGF9 3'UTR 0.11 TCGA-NJ-A4YF-01 9 124329405 124329405 C T DAB2IP 5'UTR 0.29 TCGA-NJ-A4YF-01 9 125140711 125140711 G T PTGS1 Splice_Site p.X71_splice 0.10 TCGA-NJ-A4YF-01 9 125315897 125315897 G A OR1N2 Missense_Mutation p.S150N 0.23 tolerated(0.05) benign(0.003) TCGA-NJ-A4YF-01 9 133779474 133779474 G A FIBCD1 Missense_Mutation p.R455W 0.22 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 9 133779622 133779622 G A FIBCD1 Silent p.Y405Y 0.18 TCGA-NJ-A4YF-01 9 135139862 135139862 G A SETX Missense_Mutation p.H2600Y 0.32 tolerated_low_confidence(0.21) benign(0.004) TCGA-NJ-A4YF-01 9 136234180 136234180 G A SURF4 Silent p.L64L 0.50 TCGA-NJ-A4YF-01 9 136918440 136918440 G A BRD3 Nonsense_Mutation p.Q54* 0.17 TCGA-NJ-A4YF-01 9 138457654 138457654 T A PAEP Intron 0.17 TCGA-NJ-A4YF-01 9 138671204 138671204 G T KCNT1 Splice_Site p.X910_splice 0.24 TCGA-NJ-A4YF-01 9 139265007 139265007 C A CARD9 Missense_Mutation p.Q258H 0.17 tolerated(0.09) possibly_damaging(0.519) TCGA-NJ-A4YF-01 9 139874452 139874452 C T PTGDS Missense_Mutation p.A129V 0.06 deleterious(0) probably_damaging(0.994) TCGA-NJ-A4YF-01 9 140051461 140051461 A T GRIN1 Missense_Mutation p.I335F 0.59 tolerated(0.27) possibly_damaging(0.74) TCGA-NJ-A4YF-01 9 19785954 19785954 G T SLC24A2 Missense_Mutation p.A304E 0.23 tolerated(0.22) benign(0.007) TCGA-NJ-A4YF-01 9 2811432 2811432 C A KIAA0020 Missense_Mutation p.V522F 0.18 tolerated(0.05) benign(0.255) TCGA-NJ-A4YF-01 9 32550857 32550857 C - TOPORS Frame_Shift_Del p.G38Dfs*30 0.18 TCGA-NJ-A4YF-01 9 32633492 32633492 C A TAF1L Missense_Mutation p.D696Y 0.37 deleterious(0) probably_damaging(0.954) TCGA-NJ-A4YF-01 9 33384951 33384951 C T AQP7 3'UTR 0.22 TCGA-NJ-A4YF-01 9 33386974 33386974 G T AQP7 Silent p.R87R 0.09 TCGA-NJ-A4YF-01 9 36669321 36669321 C T MELK Silent p.L475L 0.40 TCGA-NJ-A4YF-01 9 37015150 37015150 C A PAX5 Missense_Mutation p.G85V 0.13 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 9 37737135 37737135 G T FRMPD1 Missense_Mutation p.A482S 0.41 tolerated(0.31) benign(0.069) TCGA-NJ-A4YF-01 9 6329060 6329060 T A TPD52L3 3'UTR 0.32 TCGA-NJ-A4YF-01 9 73736141 73736141 G A TRPM3 Missense_Mutation p.R44W 0.20 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-NJ-A4YF-01 9 73736142 73736142 G A TRPM3 Silent p.I43I 0.19 TCGA-NJ-A4YF-01 9 75773355 75773355 T C ANXA1 5'UTR 0.16 TCGA-NJ-A4YF-01 9 79259794 79259794 C A PRUNE2 Missense_Mutation p.E2863D 0.12 deleterious(0.01) possibly_damaging(0.665) TCGA-NJ-A4YF-01 9 79320556 79320556 G T PRUNE2 Missense_Mutation p.P2212T 0.31 tolerated(0.39) benign(0.006) TCGA-NJ-A4YF-01 9 84605750 84605750 G T SPATA31D1 Missense_Mutation p.R122L 0.26 deleterious(0.01) possibly_damaging(0.697) TCGA-NJ-A4YF-01 9 8492932 8492932 G A PTPRD Silent p.T799T 0.28 TCGA-NJ-A4YF-01 9 8521487 8521487 C A PTPRD Nonsense_Mutation p.G251* 0.28 TCGA-NJ-A4YF-01 9 8526626 8526626 C A PTPRD Splice_Site p.X190_splice 0.24 TCGA-NJ-A4YF-01 9 86530332 86530332 C T KIF27 Missense_Mutation p.E59K 0.12 deleterious(0.01) possibly_damaging(0.861) TCGA-NJ-A4YF-01 9 89771702 89771702 C A C9orf170 3'UTR 0.29 TCGA-NJ-A4YF-01 9 89771703 89771703 C A C9orf170 3'UTR 0.33 TCGA-NJ-A4YF-01 9 90263781 90263781 A C DAPK1 Missense_Mutation p.N472T 0.26 deleterious(0.01) benign(0.409) TCGA-NJ-A4YF-01 9 95055751 95055751 T G IARS 5'UTR 0.23 TCGA-NJ-A4YF-01 9 96392312 96392312 T G PHF2 Missense_Mutation p.C53W 0.16 deleterious(0) unknown(0) TCGA-NJ-A4YF-01 9 96392313 96392313 G T PHF2 Nonsense_Mutation p.E54* 0.16 TCGA-NJ-A4YF-01 9 990877 990877 G A DMRT3 Missense_Mutation p.E431K 0.25 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-NJ-A4YF-01 X 101821916 101821916 T A NXF4 RNA 0.30 TCGA-NJ-A4YF-01 X 101826499 101826499 C A NXF4 RNA 0.64 TCGA-NJ-A4YF-01 X 106884134 106884134 C A PRPS1 Missense_Mutation p.S103R 0.47 deleterious(0) probably_damaging(0.919) TCGA-NJ-A4YF-01 X 107977503 107977503 G T IRS4 Missense_Mutation p.A691D 0.51 deleterious_low_confidence(0) unknown(0) TCGA-NJ-A4YF-01 X 11316746 11316746 C T AMELX Missense_Mutation p.P89S 0.49 tolerated(0.25) unknown(0) TCGA-NJ-A4YF-01 X 123615742 123615742 A T TENM1 Missense_Mutation p.N1263K 0.24 tolerated(0.13) benign(0.045) TCGA-NJ-A4YF-01 X 123615743 123615743 T A TENM1 Missense_Mutation p.N1263I 0.24 deleterious(0.01) benign(0.011) TCGA-NJ-A4YF-01 X 127185199 127185199 C G ACTRT1 Missense_Mutation p.K329N 0.57 deleterious(0.02) probably_damaging(0.937) TCGA-NJ-A4YF-01 X 127185218 127185218 G T ACTRT1 Missense_Mutation p.S323Y 0.55 deleterious(0.01) probably_damaging(0.951) TCGA-NJ-A4YF-01 X 12720094 12720095 - A FRMPD4 Frame_Shift_Ins p.Q347Afs*52 0.20 TCGA-NJ-A4YF-01 X 13061295 13061295 T A FAM9C Missense_Mutation p.D45V 0.51 deleterious(0.01) probably_damaging(0.937) TCGA-NJ-A4YF-01 X 131219733 131219733 T A FRMD7 Missense_Mutation p.D174V 0.24 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YF-01 X 131234703 131234703 G T FRMD7 Missense_Mutation p.S33R 0.56 tolerated(0.24) possibly_damaging(0.839) TCGA-NJ-A4YF-01 X 133087159 133087159 T A GPC3 Silent p.A85A 0.27 TCGA-NJ-A4YF-01 X 134856896 134856896 G T CT45A1 3'UTR 0.04 TCGA-NJ-A4YF-01 X 14882881 14882881 T A FANCB Missense_Mutation p.Q251L 0.29 deleterious(0) possibly_damaging(0.57) TCGA-NJ-A4YF-01 X 149639081 149639081 C A MAMLD1 Missense_Mutation p.S387R 0.63 deleterious(0) probably_damaging(0.951) TCGA-NJ-A4YF-01 X 151093104 151093104 C T MAGEA4 3'UTR 0.56 TCGA-NJ-A4YF-01 X 153461470 153461470 C A OPN1MW Missense_Mutation p.S345Y 0.34 deleterious(0.01) benign(0.027) TCGA-NJ-A4YF-01 X 18183169 18183169 G C BEND2 Nonsense_Mutation p.S787* 0.26 TCGA-NJ-A4YF-01 X 26157193 26157193 A G MAGEB18 Missense_Mutation p.T31A 0.56 tolerated(0.14) benign(0.329) TCGA-NJ-A4YF-01 X 32459413 32459413 G T DMD Missense_Mutation p.H1269N 0.22 possibly_damaging(0.584) TCGA-NJ-A4YF-01 X 34149547 34149547 C A FAM47A Silent p.R283R 0.66 TCGA-NJ-A4YF-01 X 35820799 35820799 A T MAGEB16 Silent p.L162L 0.28 TCGA-NJ-A4YF-01 X 35820938 35820938 G T MAGEB16 Missense_Mutation p.V209F 0.52 deleterious(0) possibly_damaging(0.85) TCGA-NJ-A4YF-01 X 37312723 37312723 C T PRRG1 Missense_Mutation p.P169L 0.50 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YF-01 X 41010268 41010268 G C USP9X Missense_Mutation p.R574T 0.75 deleterious(0) benign(0.081) TCGA-NJ-A4YF-01 X 68749624 68749624 C T FAM155B Missense_Mutation p.P415L 0.33 deleterious(0.01) benign(0.133) TCGA-NJ-A4YF-01 X 70145695 70145695 C A SLC7A3 Missense_Mutation p.D610Y 0.65 deleterious(0) benign(0.14) TCGA-NJ-A4YF-01 X 71360653 71360653 A T NHSL2 Intron 0.40 TCGA-NJ-A4YF-01 X 72674378 72674378 G T CDX4 Missense_Mutation p.G271V 0.47 tolerated(0.21) possibly_damaging(0.71) TCGA-NJ-A4YF-01 X 73043431 73043431 A T XIST RNA 0.25 TCGA-NJ-A4YF-01 X 73062534 73062534 G A XIST RNA 0.23 TCGA-NJ-A4YF-01 X 77112883 77112883 G A MAGT1 Missense_Mutation p.R200W 0.63 deleterious(0.01) benign(0.119) TCGA-NJ-A4YF-01 X 84349180 84349180 G T SATL1 Silent p.G610G 0.48 TCGA-NJ-A4YF-01 X 91132933 91132933 A T PCDH11X Missense_Mutation p.D565V 0.58 deleterious(0) probably_damaging(1) TCGA-NJ-A4YF-01 X 96197084 96197084 C G DIAPH2 Missense_Mutation p.P465A 0.18 deleterious(0) unknown(0) TCGA-NJ-A4YF-01 X 96354699 96354699 G T DIAPH2 Missense_Mutation p.V752L 0.39 tolerated(0.14) possibly_damaging(0.74) TCGA-NJ-A4YF-01 X 96354701 96354701 G T DIAPH2 Silent p.V752V 0.38 TCGA-NJ-A4YF-01 X 99663435 99663435 T C PCDH19 Missense_Mutation p.D54G 0.24 tolerated(0.32) benign(0.029) TCGA-NJ-A4YG-01 10 111628386 111628386 G C XPNPEP1 Missense_Mutation p.L620V 0.04 deleterious(0) probably_damaging(0.992) TCGA-NJ-A4YG-01 10 112724813 112724813 G A SHOC2 Missense_Mutation p.E233K 0.07 tolerated(0.61) possibly_damaging(0.767) TCGA-NJ-A4YG-01 10 122334668 122334668 G A PPAPDC1A Silent p.T157T 0.07 TCGA-NJ-A4YG-01 10 21784583 21784583 G A CASC10 Silent p.L119L 0.05 TCGA-NJ-A4YG-01 10 49457143 49457143 G C FRMPD2 Missense_Mutation p.S77C 0.12 tolerated(0.07) probably_damaging(0.969) TCGA-NJ-A4YG-01 10 70892681 70892681 A T VPS26A Missense_Mutation p.I11F 0.09 deleterious(0.02) benign(0.071) TCGA-NJ-A4YG-01 10 74914025 74914025 T C ECD Missense_Mutation p.I258V 0.20 tolerated(1) benign(0.014) TCGA-NJ-A4YG-01 10 7820939 7820939 C T KIN Silent p.Q140Q 0.05 TCGA-NJ-A4YG-01 11 108383184 108383184 G C EXPH5 Missense_Mutation p.T1017R 0.14 deleterious(0) probably_damaging(0.937) TCGA-NJ-A4YG-01 11 118106221 118106221 C T MPZL3 Missense_Mutation p.V179M 0.15 deleterious(0) possibly_damaging(0.664) TCGA-NJ-A4YG-01 11 118965881 118965881 T C H2AFX Missense_Mutation p.K75R 0.18 deleterious_low_confidence(0.02) benign(0.169) TCGA-NJ-A4YG-01 11 120347996 120347996 C T ARHGEF12 Missense_Mutation p.P1145L 0.11 deleterious(0.05) benign(0.003) TCGA-NJ-A4YG-01 11 30034216 30034216 C A KCNA4 Missense_Mutation p.A4S 0.18 deleterious_low_confidence(0) unknown(0) TCGA-NJ-A4YG-01 11 3988913 3988913 G T STIM1 Splice_Site p.X90_splice 0.22 TCGA-NJ-A4YG-01 11 49598065 49598065 A T RP11-707M1.1 RNA 0.21 TCGA-NJ-A4YG-01 11 55038556 55038556 T C TRIM48 3'UTR 0.18 TCGA-NJ-A4YG-01 11 55339921 55339921 C A OR4C16 Silent p.G106G 0.15 TCGA-NJ-A4YG-01 11 55419084 55419084 C A OR4S2 Silent p.L235L 0.16 TCGA-NJ-A4YG-01 11 63141182 63141182 C A SLC22A9 Silent p.A191A 0.18 TCGA-NJ-A4YG-01 11 64606967 64606967 G A CDC42BPG Missense_Mutation p.L220F 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-NJ-A4YG-01 11 67259700 67259700 G A PITPNM1 Missense_Mutation p.S1180L 0.19 tolerated(0.05) benign(0.003) TCGA-NJ-A4YG-01 11 82643386 82643386 G A C11orf82 Missense_Mutation p.D336N 0.08 tolerated(0.4) benign(0.035) TCGA-NJ-A4YG-01 12 107048022 107048022 G C RFX4 Missense_Mutation p.E79Q 0.08 deleterious(0.01) probably_damaging(0.983) TCGA-NJ-A4YG-01 12 18891290 18891290 G T CAPZA3 Missense_Mutation p.A30S 0.26 tolerated(0.07) benign(0.072) TCGA-NJ-A4YG-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.37 deleterious(0) benign(0.361) TCGA-NJ-A4YG-01 12 2602389 2602389 C T CACNA1C Missense_Mutation p.A317V 0.10 deleterious(0.02) possibly_damaging(0.674) TCGA-NJ-A4YG-01 12 49743205 49743205 C T DNAJC22 Missense_Mutation p.R184C 0.06 tolerated(0.2) benign(0.026) TCGA-NJ-A4YG-01 12 58001239 58001239 C A DTX3 Missense_Mutation p.A198D 0.40 deleterious(0) possibly_damaging(0.786) TCGA-NJ-A4YG-01 12 68549256 68549256 C A IFNG Missense_Mutation p.L126F 0.31 tolerated(0.15) benign(0.014) TCGA-NJ-A4YG-01 12 68715370 68715370 C G MDM1 Missense_Mutation p.E280D 0.25 tolerated(0.17) probably_damaging(0.999) TCGA-NJ-A4YG-01 13 114535760 114535760 T A GAS6 Intron 0.38 TCGA-NJ-A4YG-01 13 27254301 27254301 C T WASF3 Intron 0.08 TCGA-NJ-A4YG-01 13 43537455 43537455 A G EPSTI1 Missense_Mutation p.V142A 0.21 tolerated(0.31) benign(0.058) TCGA-NJ-A4YG-01 14 100705969 100705969 C G YY1 Missense_Mutation p.Q130E 0.07 tolerated(0.07) benign(0.062) TCGA-NJ-A4YG-01 14 105916637 105916637 G A MTA1 Silent p.S136S 0.10 TCGA-NJ-A4YG-01 14 20502637 20502637 C A OR4K13 Missense_Mutation p.W94L 0.09 tolerated(0.17) benign(0.001) TCGA-NJ-A4YG-01 14 33014449 33014449 C T AKAP6 Missense_Mutation p.S197F 0.11 deleterious(0) possibly_damaging(0.748) TCGA-NJ-A4YG-01 14 58666919 58666919 C G ACTR10 5'UTR 0.11 TCGA-NJ-A4YG-01 14 61180201 61180201 T C SIX4 Missense_Mutation p.E757G 0.11 tolerated_low_confidence(0.23) probably_damaging(0.986) TCGA-NJ-A4YG-01 14 65054903 65054903 C T PPP1R36 Silent p.L324L 0.08 TCGA-NJ-A4YG-01 14 71051411 71051411 T A MED6 3'UTR 0.10 TCGA-NJ-A4YG-01 14 95670315 95670315 C T CLMN Silent p.L457L 0.06 TCGA-NJ-A4YG-01 15 25492350 25492350 C A SNORD115-40 3'Flank 0.16 TCGA-NJ-A4YG-01 15 27185160 27185160 C A GABRA5 Silent p.T271T 0.19 TCGA-NJ-A4YG-01 15 33988480 33988480 G T RYR3 Missense_Mutation p.Q1974H 0.13 possibly_damaging(0.781) TCGA-NJ-A4YG-01 15 44037352 44037352 G A PDIA3 5'Flank 0.11 TCGA-NJ-A4YG-01 15 65490508 65490508 C T CILP Missense_Mutation p.G706R 0.06 deleterious(0) probably_damaging(1) TCGA-NJ-A4YG-01 16 10032131 10032131 C G GRIN2A Missense_Mutation p.C231S 0.15 deleterious(0.03) probably_damaging(0.985) TCGA-NJ-A4YG-01 16 20565243 20565243 C G ACSM2B Splice_Site p.X199_splice 0.05 TCGA-NJ-A4YG-01 16 23403743 23403743 C T COG7 Missense_Mutation p.E702K 0.09 tolerated(0.17) benign(0.043) TCGA-NJ-A4YG-01 16 31142154 31142154 C A KAT8 Silent p.I415I 0.07 TCGA-NJ-A4YG-01 16 4942171 4942171 C T PPL Missense_Mutation p.R565Q 0.09 tolerated(0.44) benign(0.001) TCGA-NJ-A4YG-01 16 57803856 57803856 G T KIFC3 Nonsense_Mutation p.Y317* 0.09 TCGA-NJ-A4YG-01 16 614977 614977 C T C16orf11 Silent p.D462D 0.17 TCGA-NJ-A4YG-01 16 8898643 8898643 T C PMM2 Silent p.Y66Y 0.35 TCGA-NJ-A4YG-01 17 10297607 10297607 G T MYH8 Missense_Mutation p.L1709I 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-NJ-A4YG-01 17 27013422 27013422 A T SUPT6H Silent p.A851A 0.12 TCGA-NJ-A4YG-01 17 39768577 39768577 G A KRT16 Nonsense_Mutation p.Q122* 0.18 TCGA-NJ-A4YG-01 17 4416587 4416587 G T SPNS2 Missense_Mutation p.G139V 0.09 tolerated(0.17) benign(0.398) TCGA-NJ-A4YG-01 17 46804384 46804384 G T HOXB13 Missense_Mutation p.P208H 0.17 tolerated(0.31) benign(0.095) TCGA-NJ-A4YG-01 17 65144705 65144705 G A HELZ Silent p.R867R 0.21 TCGA-NJ-A4YG-01 17 7010355 7010355 G T ASGR2 Missense_Mutation p.N209K 0.11 deleterious(0.02) benign(0.233) TCGA-NJ-A4YG-01 17 77757912 77757912 G T CBX2 Missense_Mutation p.G224C 0.15 deleterious(0.02) probably_damaging(0.923) TCGA-NJ-A4YG-01 18 28711478 28711478 G C DSC1 Intron 0.21 TCGA-NJ-A4YG-01 18 34380235 34380235 C T TPGS2 Missense_Mutation p.R141H 0.05 deleterious(0.05) benign(0.125) TCGA-NJ-A4YG-01 18 67365761 67365761 G T DOK6 Silent p.V177V 0.11 TCGA-NJ-A4YG-01 18 67365762 67365762 A T DOK6 Missense_Mutation p.M178L 0.11 tolerated(0.16) benign(0.063) TCGA-NJ-A4YG-01 19 11832450 11832450 C G ZNF823 3'UTR 0.11 TCGA-NJ-A4YG-01 19 17337064 17337064 A G OCEL1 Missense_Mutation p.N3S 0.17 tolerated_low_confidence(0.06) benign(0.001) TCGA-NJ-A4YG-01 19 18273875 18273875 A G PIK3R2 Missense_Mutation p.N403S 0.15 tolerated(0.21) benign(0.003) TCGA-NJ-A4YG-01 19 19136389 19136389 G T SUGP2 Silent p.P256P 0.15 TCGA-NJ-A4YG-01 19 23159438 23159438 C G ZNF728 Missense_Mutation p.G234A 0.16 deleterious(0.01) possibly_damaging(0.693) TCGA-NJ-A4YG-01 19 31039929 31039929 C A ZNF536 Missense_Mutation p.P1135T 0.13 tolerated_low_confidence(0.43) benign(0.002) TCGA-NJ-A4YG-01 19 31039930 31039930 C A ZNF536 Missense_Mutation p.P1135H 0.13 tolerated_low_confidence(0.06) possibly_damaging(0.503) TCGA-NJ-A4YG-01 19 39219949 39219950 - C ACTN4 Frame_Shift_Ins p.D874Rfs*17 0.24 TCGA-NJ-A4YG-01 19 53269378 53269378 T G ZNF600 Missense_Mutation p.H544P 0.07 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YG-01 19 53857201 53857201 A G ZNF845 3'UTR 0.14 TCGA-NJ-A4YG-01 19 9065769 9065769 G C MUC16 Nonsense_Mutation p.S7226* 0.12 TCGA-NJ-A4YG-01 19 9083393 9083393 A C MUC16 Missense_Mutation p.S2808A 0.15 unknown(0) TCGA-NJ-A4YG-01 19 9237522 9237522 G T OR7G3 Nonsense_Mutation p.Y35* 0.14 TCGA-NJ-A4YG-01 19 9577183 9577183 A T ZNF560 3'UTR 0.24 TCGA-NJ-A4YG-01 1 10709362 10709362 G A CASZ1 Missense_Mutation p.P1005S 0.24 tolerated(0.5) benign(0.089) TCGA-NJ-A4YG-01 1 149755593 149755593 A G FCGR1A Silent p.P29P 0.35 TCGA-NJ-A4YG-01 1 155340428 155340428 C G ASH1L Missense_Mutation p.E2185Q 0.05 deleterious_low_confidence(0.02) probably_damaging(0.979) TCGA-NJ-A4YG-01 1 156352445 156352445 C T RHBG Intron 0.25 TCGA-NJ-A4YG-01 1 157069347 157069347 G A ETV3L 5'UTR 0.20 TCGA-NJ-A4YG-01 1 158577092 158577092 T G OR10Z1 Missense_Mutation p.I288M 0.13 tolerated(0.52) benign(0.284) TCGA-NJ-A4YG-01 1 159170716 159170716 C T CADM3 3'UTR 0.06 TCGA-NJ-A4YG-01 1 161145756 161145756 C T B4GALT3 Missense_Mutation p.R32Q 0.05 tolerated(0.15) benign(0.022) TCGA-NJ-A4YG-01 1 171168556 171168556 C T FMO2 Missense_Mutation p.R186C 0.05 deleterious(0) possibly_damaging(0.906) TCGA-NJ-A4YG-01 1 179437795 179437795 C T AXDND1 Intron 0.15 TCGA-NJ-A4YG-01 1 212560333 212560333 G A TMEM206 Silent p.A142A 0.08 TCGA-NJ-A4YG-01 1 2160607 2160607 C T SKI Silent p.F134F 0.11 TCGA-NJ-A4YG-01 1 216062216 216062216 G T USH2A Missense_Mutation p.P2592Q 0.09 probably_damaging(0.999) TCGA-NJ-A4YG-01 1 237632425 237632425 C A RYR2 Missense_Mutation p.A549D 0.09 possibly_damaging(0.815) TCGA-NJ-A4YG-01 1 237659945 237659945 C A RYR2 Missense_Mutation p.S699Y 0.11 benign(0.435) TCGA-NJ-A4YG-01 1 237659946 237659946 C A RYR2 Silent p.S699S 0.11 TCGA-NJ-A4YG-01 1 240072601 240072601 G T CHRM3 3'UTR 0.17 TCGA-NJ-A4YG-01 1 248059389 248059389 C G OR2W3 Silent p.P167P 0.07 TCGA-NJ-A4YG-01 1 248551341 248551341 C G OR2T6 Missense_Mutation p.I144M 0.26 tolerated(0.91) benign(0.363) TCGA-NJ-A4YG-01 1 34330356 34330356 G T HMGB4 3'UTR 0.09 TCGA-NJ-A4YG-01 1 44595173 44595173 C T KLF17 Missense_Mutation p.A77V 0.10 tolerated(0.07) benign(0.091) TCGA-NJ-A4YG-01 1 45475126 45475126 C T HECTD3 Missense_Mutation p.D302N 0.17 deleterious(0.04) benign(0.446) TCGA-NJ-A4YG-01 1 47685502 47685502 C A TAL1 Missense_Mutation p.D296Y 0.10 deleterious(0) probably_damaging(0.996) TCGA-NJ-A4YG-01 1 47767372 47767372 T A STIL Missense_Mutation p.E105V 0.13 deleterious(0) probably_damaging(0.929) TCGA-NJ-A4YG-01 1 62677093 62677093 C A L1TD1 3'UTR 0.08 TCGA-NJ-A4YG-01 1 66723129 66723129 A T PDE4B Intron 0.07 TCGA-NJ-A4YG-01 20 13830888 13830888 G T SEL1L2 Silent p.A519A 0.10 TCGA-NJ-A4YG-01 20 271350 271350 G T C20orf96 5'UTR 0.24 TCGA-NJ-A4YG-01 20 34242536 34242536 G A RBM12 Missense_Mutation p.P237S 0.16 tolerated(0.93) unknown(0) TCGA-NJ-A4YG-01 20 61951500 61951500 C T COL20A1 Missense_Mutation p.T1009M 0.27 tolerated(1) benign(0.008) TCGA-NJ-A4YG-01 21 15746311 15746311 C A HSPA13 Missense_Mutation p.G348V 0.25 tolerated(0.12) benign(0.17) TCGA-NJ-A4YG-01 21 37758382 37758382 G A CHAF1B 5'UTR 0.14 TCGA-NJ-A4YG-01 22 38130958 38130959 - G TRIOBP Frame_Shift_Ins p.A1541Gfs*12 0.18 TCGA-NJ-A4YG-01 22 38541632 38541632 C A PLA2G6 Missense_Mutation p.A80S 0.25 deleterious(0) probably_damaging(1) TCGA-NJ-A4YG-01 2 10187792 10187792 C G KLF11 Missense_Mutation p.Q110E 0.15 deleterious(0.03) probably_damaging(0.986) TCGA-NJ-A4YG-01 2 103011082 103011082 G C IL18R1 Missense_Mutation p.G422A 0.11 deleterious(0.02) probably_damaging(1) TCGA-NJ-A4YG-01 2 107041575 107041575 G T RGPD3 Missense_Mutation p.Q950K 0.18 tolerated(0.73) benign(0.053) TCGA-NJ-A4YG-01 2 128466446 128466446 G A WDR33 Missense_Mutation p.R1196C 0.18 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-NJ-A4YG-01 2 168106901 168106901 C G XIRP2 Missense_Mutation p.A3000G 0.17 probably_damaging(0.928) TCGA-NJ-A4YG-01 2 170177288 170177288 G A LRP2 Silent p.C62C 0.16 TCGA-NJ-A4YG-01 2 191897800 191897800 C T STAT4 Missense_Mutation p.R643Q 0.07 deleterious(0.01) possibly_damaging(0.853) TCGA-NJ-A4YG-01 2 201371684 201371684 C A KCTD18 Missense_Mutation p.G19V 0.19 deleterious(0) probably_damaging(0.981) TCGA-NJ-A4YG-01 2 216990696 216990696 G T XRCC5 Missense_Mutation p.W247L 0.19 deleterious(0) probably_damaging(0.987) TCGA-NJ-A4YG-01 2 242755838 242755838 C T NEU4 Missense_Mutation p.R66C 0.22 tolerated(0.18) benign(0.023) TCGA-NJ-A4YG-01 2 48809571 48809571 G C STON1-GTF2A1L Missense_Mutation p.R600P 0.14 tolerated(0.12) benign(0.019) TCGA-NJ-A4YG-01 2 66798499 66798499 C A MEIS1 3'UTR 0.25 TCGA-NJ-A4YG-01 2 89157136 89157136 C T IGKC Missense_Mutation p.G21E 0.18 deleterious(0.05) possibly_damaging(0.688) TCGA-NJ-A4YG-01 2 99938575 99938575 C G TXNDC9 Missense_Mutation p.E136Q 0.06 tolerated(0.17) benign(0.34) TCGA-NJ-A4YG-01 3 164907391 164907391 C A SLITRK3 Missense_Mutation p.A410S 0.14 deleterious(0.04) possibly_damaging(0.524) TCGA-NJ-A4YG-01 3 194373598 194373598 C T LSG1 Missense_Mutation p.E345K 0.07 tolerated(0.29) benign(0.021) TCGA-NJ-A4YG-01 3 32576092 32576114 TATATTTTTGTTTTCTTTTACTG - DYNC1LI1 Frame_Shift_Del p.S286* 0.14 TCGA-NJ-A4YG-01 3 42751244 42751244 C A CCDC13 Missense_Mutation p.K640N 0.12 deleterious(0.04) possibly_damaging(0.629) TCGA-NJ-A4YG-01 3 44763242 44763242 G T ZNF502 Silent p.T311T 0.16 TCGA-NJ-A4YG-01 3 99568015 99568015 G A FILIP1L Silent p.D835D 0.20 TCGA-NJ-A4YG-01 4 140058905 140058905 G A ELF2 5'UTR 0.07 TCGA-NJ-A4YG-01 4 189068512 189068512 A T TRIML1 Missense_Mutation p.N465Y 0.10 deleterious_low_confidence(0.02) benign(0.365) TCGA-NJ-A4YG-01 4 25673328 25673328 G A SLC34A2 Missense_Mutation p.E345K 0.17 tolerated(0.43) benign(0.002) TCGA-NJ-A4YG-01 4 4323004 4323004 G T ZBTB49 Silent p.A753A 0.14 TCGA-NJ-A4YG-01 4 71628358 71628358 C T RUFY3 Missense_Mutation p.L101F 0.07 deleterious(0) probably_damaging(1) TCGA-NJ-A4YG-01 5 140241117 140241117 G A AC005609.1 3'UTR 0.19 TCGA-NJ-A4YG-01 5 140783009 140783009 G A PCDHGA9 Missense_Mutation p.V164M 0.09 tolerated_low_confidence(0.57) benign(0.084) TCGA-NJ-A4YG-01 5 140801028 140801028 G A PCDHGA11 Silent p.V78V 0.09 TCGA-NJ-A4YG-01 5 167419951 167419951 A G TENM2 Missense_Mutation p.H317R 0.09 deleterious(0) probably_damaging(0.925) TCGA-NJ-A4YG-01 5 176798011 176798011 G T RGS14 Silent p.P411P 0.26 TCGA-NJ-A4YG-01 5 36985251 36985251 A T NIPBL Nonsense_Mutation p.R657* 0.24 TCGA-NJ-A4YG-01 5 37331816 37331816 C G NUP155 Missense_Mutation p.E534Q 0.06 tolerated(0.19) benign(0.015) TCGA-NJ-A4YG-01 5 38407139 38407139 T A EGFLAM Silent p.P346P 0.19 TCGA-NJ-A4YG-01 5 41510621 41510621 G A PLCXD3 Missense_Mutation p.S3L 0.10 tolerated_low_confidence(0.07) benign(0.215) TCGA-NJ-A4YG-01 5 65372223 65372223 G A ERBB2IP Missense_Mutation p.R1355K 0.05 tolerated(0.87) benign(0.015) TCGA-NJ-A4YG-01 5 76259285 76259285 G T CRHBP Missense_Mutation p.A271S 0.21 deleterious(0.02) probably_damaging(0.955) TCGA-NJ-A4YG-01 5 9054339 9054339 C T SEMA5A Nonsense_Mutation p.W850* 0.09 TCGA-NJ-A4YG-01 5 95249609 95249609 C A ELL2 Missense_Mutation p.G116V 0.17 deleterious(0) probably_damaging(0.919) TCGA-NJ-A4YG-01 6 101296580 101296580 C T ASCC3 Missense_Mutation p.G82E 0.16 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YG-01 6 116757177 116757177 G T DSE Missense_Mutation p.D516Y 0.14 deleterious(0.02) possibly_damaging(0.814) TCGA-NJ-A4YG-01 6 133035010 133035010 C A VNN1 Silent p.R55R 0.14 TCGA-NJ-A4YG-01 6 136596984 136596984 T C BCLAF1 Missense_Mutation p.N560S 0.05 tolerated(0.97) possibly_damaging(0.486) TCGA-NJ-A4YG-01 6 136597148 136597148 G A BCLAF1 Silent p.L505L 0.04 TCGA-NJ-A4YG-01 6 160174524 160174524 G C WTAP Missense_Mutation p.R162P 0.09 deleterious(0) probably_damaging(1) TCGA-NJ-A4YG-01 6 25762221 25762221 G T SLC17A4 Missense_Mutation p.V11L 0.10 tolerated(0.28) benign(0.023) TCGA-NJ-A4YG-01 6 27805758 27805758 T A HIST1H2AK Missense_Mutation p.K120N 0.06 deleterious_low_confidence(0) benign(0.372) TCGA-NJ-A4YG-01 6 32190384 32190384 C A NOTCH4 Nonsense_Mutation p.E119* 0.08 TCGA-NJ-A4YG-01 6 38840728 38840728 G T DNAH8 Missense_Mutation p.W2211C 0.07 probably_damaging(1) TCGA-NJ-A4YG-01 6 86238081 86238081 C T SNX14 Splice_Site p.X632_splice 0.07 TCGA-NJ-A4YG-01 6 88318846 88318846 G C ORC3 Missense_Mutation p.R204S 0.17 tolerated(0.07) possibly_damaging(0.662) TCGA-NJ-A4YG-01 6 99797120 99797120 G T FAXC Silent p.I43I 0.12 TCGA-NJ-A4YG-01 7 116199313 116199313 T C CAV1 Missense_Mutation p.V170A 0.14 deleterious(0) benign(0.142) TCGA-NJ-A4YG-01 7 11676358 11676358 C A THSD7A Nonsense_Mutation p.E141* 0.10 TCGA-NJ-A4YG-01 7 128483892 128483892 C T FLNC Missense_Mutation p.P952S 0.14 tolerated(0.07) probably_damaging(0.969) TCGA-NJ-A4YG-01 7 129049354 129049354 A G AHCYL2 Missense_Mutation p.I445V 0.15 tolerated(0.34) benign(0.009) TCGA-NJ-A4YG-01 7 134644745 134644745 T A CALD1 Silent p.P694P 0.19 TCGA-NJ-A4YG-01 7 142605973 142605973 C A TRPV5 Missense_Mutation p.V633F 0.18 deleterious(0) possibly_damaging(0.707) TCGA-NJ-A4YG-01 7 16793610 16793610 C T TSPAN13 Silent p.F6F 0.09 TCGA-NJ-A4YG-01 7 27134229 27134229 G C HOXA1 Missense_Mutation p.R280G 0.16 deleterious(0) probably_damaging(0.969) TCGA-NJ-A4YG-01 7 44572952 44572952 G T NPC1L1 Intron 0.14 TCGA-NJ-A4YG-01 7 48319222 48319222 C A ABCA13 Missense_Mutation p.Q2811K 0.05 possibly_damaging(0.584) TCGA-NJ-A4YG-01 7 86547826 86547826 C T KIAA1324L Missense_Mutation p.E509K 0.08 deleterious(0.04) possibly_damaging(0.453) TCGA-NJ-A4YG-01 7 90492534 90492534 C T CDK14 Missense_Mutation p.H179Y 0.09 deleterious(0.03) probably_damaging(1) TCGA-NJ-A4YG-01 8 104933980 104933980 G A RIMS2 Missense_Mutation p.D722N 0.14 deleterious_low_confidence(0.03) probably_damaging(0.972) TCGA-NJ-A4YG-01 8 131793006 131793006 C T ADCY8 Missense_Mutation p.R1129Q 0.07 tolerated(0.06) possibly_damaging(0.553) TCGA-NJ-A4YG-01 8 139268941 139268941 C T FAM135B Missense_Mutation p.S120N 0.31 tolerated(0.2) benign(0.142) TCGA-NJ-A4YG-01 8 139889990 139889990 C A COL22A1 Intron 0.38 TCGA-NJ-A4YG-01 8 143747138 143747138 C T JRK RNA 0.20 TCGA-NJ-A4YG-01 8 2044236 2044236 G A MYOM2 Missense_Mutation p.E759K 0.11 deleterious(0) possibly_damaging(0.801) TCGA-NJ-A4YG-01 8 28214286 28214286 C A ZNF395 Missense_Mutation p.A162S 0.12 tolerated(0.14) possibly_damaging(0.784) TCGA-NJ-A4YG-01 8 2910135 2910135 G A CSMD1 Silent p.N2503N 0.14 TCGA-NJ-A4YG-01 8 52366204 52366204 C A PXDNL Missense_Mutation p.R375M 0.13 tolerated(0.22) possibly_damaging(0.796) TCGA-NJ-A4YG-01 8 59059448 59059448 C G FAM110B Missense_Mutation p.S220C 0.05 tolerated(0.14) probably_damaging(0.962) TCGA-NJ-A4YG-01 8 75227749 75227749 C T JPH1 Silent p.S162S 0.14 TCGA-NJ-A4YG-01 8 77616729 77616729 G T ZFHX4 Missense_Mutation p.D136Y 0.06 probably_damaging(0.934) TCGA-NJ-A4YG-01 9 120476170 120476170 G T TLR4 Missense_Mutation p.Q588H 0.33 deleterious(0.03) possibly_damaging(0.645) TCGA-NJ-A4YG-01 9 121929566 121929566 G C BRINP1 Silent p.L694L 0.07 TCGA-NJ-A4YG-01 9 134351251 134351251 C T PRRC2B Silent p.C1245C 0.10 TCGA-NJ-A4YG-01 9 33923274 33923274 G A UBAP2 Nonsense_Mutation p.Q972* 0.07 TCGA-NJ-A4YG-01 X 137714889 137714889 T C FGF13 3'Flank 0.30 TCGA-NJ-A4YG-01 X 13781935 13781935 G T OFD1 Missense_Mutation p.A854S 0.26 tolerated(0.38) benign(0.05) TCGA-NJ-A4YG-01 X 139038638 139038638 G A CXorf66 Missense_Mutation p.S168L 0.05 tolerated(0.25) possibly_damaging(0.765) TCGA-NJ-A4YG-01 X 14882880 14882880 C T FANCB Silent p.Q251Q 0.07 TCGA-NJ-A4YG-01 X 39921444 39921444 T C BCOR Missense_Mutation p.N1459S 0.28 deleterious(0) possibly_damaging(0.644) TCGA-NJ-A4YG-01 X 70784555 70784555 T C OGT Silent p.F847F 0.39 TCGA-NJ-A4YG-01 X 73046055 73046055 C A XIST RNA 0.27 TCGA-NJ-A4YI-01 10 115391691 115391691 C G NRAP Missense_Mutation p.K555N 0.61 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YI-01 10 115608890 115608897 ATTAATAA - DCLRE1A Frame_Shift_Del p.L656Hfs*4 0.31 TCGA-NJ-A4YI-01 10 122263327 122263327 C A PPAPDC1A Intron 0.45 TCGA-NJ-A4YI-01 10 127708298 127708298 G T ADAM12 Missense_Mutation p.Q879K 0.44 tolerated(0.21) benign(0.033) TCGA-NJ-A4YI-01 10 15761671 15761671 G T ITGA8 Missense_Mutation p.P34T 0.67 deleterious(0.05) possibly_damaging(0.827) TCGA-NJ-A4YI-01 10 18280126 18280126 A T SLC39A12 Missense_Mutation p.H439L 0.29 tolerated(0.53) benign(0.155) TCGA-NJ-A4YI-01 10 21101791 21101791 C G NEBL Missense_Mutation p.V809L 0.46 deleterious(0.02) benign(0.217) TCGA-NJ-A4YI-01 10 27497247 27497247 C G ACBD5 Silent p.L444L 0.28 TCGA-NJ-A4YI-01 10 31608200 31608200 G T ZEB1 Missense_Mutation p.A13S 0.80 tolerated(0.08) probably_damaging(0.989) TCGA-NJ-A4YI-01 10 55591283 55591283 C A PCDH15 Missense_Mutation p.G1332C 0.50 deleterious(0) probably_damaging(1) TCGA-NJ-A4YI-01 10 55600186 55600186 G T PCDH15 Silent p.R1293R 0.55 TCGA-NJ-A4YI-01 10 61413827 61413827 T A SLC16A9 Silent p.G319G 0.65 TCGA-NJ-A4YI-01 10 70333452 70333452 C A TET1 Missense_Mutation p.Q453K 0.43 tolerated(0.12) benign(0.114) TCGA-NJ-A4YI-01 10 94828426 94828426 C T CYP26C1 Missense_Mutation p.S514L 0.40 tolerated(0.13) benign(0.002) TCGA-NJ-A4YI-01 10 95418721 95418721 C A PDE6C Silent p.A700A 0.54 TCGA-NJ-A4YI-01 10 98770767 98770767 G A SLIT1 Silent p.L1108L 0.49 TCGA-NJ-A4YI-01 11 105923631 105923631 C A KBTBD3 Missense_Mutation p.Q595H 0.31 deleterious(0) probably_damaging(0.937) TCGA-NJ-A4YI-01 11 108277822 108277822 C T C11orf65 Splice_Site p.X76_splice 0.32 TCGA-NJ-A4YI-01 11 116701583 116701583 G T APOC3 Silent p.V50V 0.40 TCGA-NJ-A4YI-01 11 118963717 118963717 C T HMBS Missense_Mutation p.H300Y 0.17 tolerated(0.39) benign(0.018) TCGA-NJ-A4YI-01 11 11954630 11954630 G C USP47 Missense_Mutation p.K509N 0.35 tolerated(0.11) possibly_damaging(0.891) TCGA-NJ-A4YI-01 11 120744843 120744843 C A GRIK4 Missense_Mutation p.S325R 0.23 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YI-01 11 120744844 120744844 C A GRIK4 Missense_Mutation p.Q326K 0.22 tolerated(0.11) benign(0.014) TCGA-NJ-A4YI-01 11 123777894 123777894 T A OR8D4 Nonsense_Mutation p.Y252* 0.32 TCGA-NJ-A4YI-01 11 123777895 123777895 G T OR8D4 Missense_Mutation p.G253W 0.32 deleterious(0) probably_damaging(1) TCGA-NJ-A4YI-01 11 123988582 123988582 G T VWA5A Missense_Mutation p.K82N 0.40 deleterious(0.01) possibly_damaging(0.821) TCGA-NJ-A4YI-01 11 123988583 123988583 G T VWA5A Splice_Site p.X82_splice 0.39 TCGA-NJ-A4YI-01 11 132081914 132081914 A T NTM Splice_Site p.X134_splice 0.13 TCGA-NJ-A4YI-01 11 18159811 18159811 C A MRGPRX3 3'UTR 0.19 TCGA-NJ-A4YI-01 11 4510466 4510466 G T OR52K1 Missense_Mutation p.M112I 0.37 tolerated(0.22) benign(0.291) TCGA-NJ-A4YI-01 11 47305794 47305794 G C MADD Missense_Mutation p.S643T 0.30 tolerated(0.27) benign(0.04) TCGA-NJ-A4YI-01 11 48238928 48238928 C T OR4B1 Silent p.D189D 0.12 TCGA-NJ-A4YI-01 11 5012688 5012688 A G MMP26 Missense_Mutation p.H186R 0.37 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YI-01 11 5067933 5067933 C A OR52J3 Missense_Mutation p.P60T 0.40 deleterious(0) probably_damaging(0.973) TCGA-NJ-A4YI-01 11 5255681 5255681 G T HBD 5'UTR 0.17 TCGA-NJ-A4YI-01 11 5443826 5443826 C G OR51Q1 Silent p.L132L 0.33 TCGA-NJ-A4YI-01 11 55433077 55433077 G T OR4C6 Silent p.G145G 0.31 TCGA-NJ-A4YI-01 11 55594991 55594991 G A OR5L2 Silent p.V99V 0.22 TCGA-NJ-A4YI-01 11 55606501 55606501 A G OR5D16 Missense_Mutation p.R92G 0.33 deleterious(0.01) possibly_damaging(0.77) TCGA-NJ-A4YI-01 11 56431668 56431668 T A OR5AR1 Nonsense_Mutation p.C169* 0.32 TCGA-NJ-A4YI-01 11 57798733 57798733 C T OR6Q1 Silent p.S103S 0.33 TCGA-NJ-A4YI-01 11 60482864 60482864 A C MS4A8 Missense_Mutation p.S244R 0.51 deleterious(0.04) benign(0.151) TCGA-NJ-A4YI-01 11 62291631 62291631 C A AHNAK Missense_Mutation p.V3420L 0.37 benign(0.073) TCGA-NJ-A4YI-01 11 64875963 64875963 C T VPS51 Silent p.F340F 0.23 TCGA-NJ-A4YI-01 11 6501566 6501566 T C ARFIP2 Missense_Mutation p.D29G 0.29 deleterious_low_confidence(0.05) benign(0.345) TCGA-NJ-A4YI-01 11 6648429 6648429 G A DCHS1 Silent p.T1947T 0.31 TCGA-NJ-A4YI-01 11 69631163 69631163 C A FGF3 Silent p.V83V 0.36 TCGA-NJ-A4YI-01 11 7064694 7064694 C T NLRP14 Silent p.T479T 0.29 TCGA-NJ-A4YI-01 11 764846 764846 C T TALDO1 3'UTR 0.13 TCGA-NJ-A4YI-01 11 7982588 7982588 C - NLRP10 Frame_Shift_Del p.A191Pfs*16 0.21 TCGA-NJ-A4YI-01 11 8060507 8060507 C A TUB Silent p.P29P 0.33 TCGA-NJ-A4YI-01 11 82693450 82693450 C A RAB30 Missense_Mutation p.K123N 0.30 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YI-01 11 92088063 92088063 G A FAT3 Missense_Mutation p.V929I 0.33 possibly_damaging(0.541) TCGA-NJ-A4YI-01 11 92531882 92531882 G T FAT3 Missense_Mutation p.E1901D 0.16 probably_damaging(0.997) TCGA-NJ-A4YI-01 11 92714673 92714673 C T MTNR1B Missense_Mutation p.P95L 0.36 deleterious(0.04) probably_damaging(0.998) TCGA-NJ-A4YI-01 12 10599140 10599140 C A KLRC1 3'UTR 0.70 TCGA-NJ-A4YI-01 12 111701589 111701589 C A CUX2 Missense_Mutation p.Q83K 0.25 tolerated(1) benign(0.001) TCGA-NJ-A4YI-01 12 113379681 113379681 A T OAS3 Intron 0.44 TCGA-NJ-A4YI-01 12 114400175 114400175 C T RBM19 Silent p.T27T 0.29 TCGA-NJ-A4YI-01 12 121476600 121476600 C A OASL Missense_Mutation p.V59L 0.25 deleterious(0.04) benign(0.11) TCGA-NJ-A4YI-01 12 121681867 121681867 T A CAMKK2 Intron 0.35 TCGA-NJ-A4YI-01 12 122473321 122473321 A G BCL7A Missense_Mutation p.M87V 0.31 deleterious(0.02) possibly_damaging(0.55) TCGA-NJ-A4YI-01 12 130184571 130184571 C A TMEM132D Missense_Mutation p.R251L 0.48 deleterious(0.04) benign(0.083) TCGA-NJ-A4YI-01 12 131286002 131286002 T C STX2 Silent p.E165E 0.20 TCGA-NJ-A4YI-01 12 132195840 132195840 G T SFSWAP Silent p.G22G 0.47 TCGA-NJ-A4YI-01 12 14577230 14577230 T C ATF7IP Silent p.A127A 0.59 TCGA-NJ-A4YI-01 12 14577231 14577231 G T ATF7IP Nonsense_Mutation p.E128* 0.59 TCGA-NJ-A4YI-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.66 deleterious(0.04) probably_damaging(0.993) TCGA-NJ-A4YI-01 12 40681166 40681166 A G LRRK2 Silent p.T838T 0.27 TCGA-NJ-A4YI-01 12 4554424 4554424 G A FGF6 Missense_Mutation p.R105W 0.14 deleterious(0) possibly_damaging(0.794) TCGA-NJ-A4YI-01 12 49391468 49391468 A T DDN Missense_Mutation p.H397Q 0.42 tolerated_low_confidence(0.23) benign(0.01) TCGA-NJ-A4YI-01 12 50045884 50045884 C A FMNL3 Nonsense_Mutation p.E479* 0.43 TCGA-NJ-A4YI-01 12 5153823 5153823 C G KCNA5 Silent p.P170P 0.25 TCGA-NJ-A4YI-01 12 51863414 51863414 G T SLC4A8 Missense_Mutation p.V456L 0.34 tolerated(0.13) benign(0.021) TCGA-NJ-A4YI-01 12 52862794 52862794 G T KRT6C 3'UTR 0.15 TCGA-NJ-A4YI-01 12 53074043 53074043 C G KRT1 Missense_Mutation p.R30S 0.34 tolerated_low_confidence(0.22) unknown(0) TCGA-NJ-A4YI-01 12 54394247 54394247 A T HOXC9 Missense_Mutation p.Y92F 0.32 deleterious(0.02) benign(0.227) TCGA-NJ-A4YI-01 12 55641903 55641904 TC - OR6C74 Frame_Shift_Del p.S278Cfs*22 0.13 TCGA-NJ-A4YI-01 12 55759803 55759803 C A OR6C75 Silent p.V303V 0.27 TCGA-NJ-A4YI-01 12 56639370 56639370 C G ANKRD52 Missense_Mutation p.G732A 0.32 deleterious(0.01) possibly_damaging(0.869) TCGA-NJ-A4YI-01 12 56666954 56666954 T A CS Missense_Mutation p.S439C 0.10 deleterious(0) possibly_damaging(0.723) TCGA-NJ-A4YI-01 12 56992380 56992380 G A BAZ2A 3'UTR 0.33 TCGA-NJ-A4YI-01 12 63541350 63541350 A T AVPR1A Missense_Mutation p.M349K 0.31 deleterious(0) possibly_damaging(0.861) TCGA-NJ-A4YI-01 12 63541410 63541410 G T AVPR1A Missense_Mutation p.T329N 0.33 deleterious(0) benign(0.148) TCGA-NJ-A4YI-01 12 63544089 63544089 C A AVPR1A Silent p.V176V 0.34 TCGA-NJ-A4YI-01 12 64017820 64017820 C A DPY19L2 Missense_Mutation p.R318M 0.31 deleterious(0) probably_damaging(0.981) TCGA-NJ-A4YI-01 12 66703641 66703641 A G HELB Silent p.T311T 0.31 TCGA-NJ-A4YI-01 12 66932990 66932990 C G GRIP1 Missense_Mutation p.D96H 0.37 deleterious(0.01) benign(0.374) TCGA-NJ-A4YI-01 12 6709016 6709016 A G CHD4 Missense_Mutation p.S469P 0.61 deleterious(0.01) possibly_damaging(0.887) TCGA-NJ-A4YI-01 12 69326542 69326542 C A CPM Nonsense_Mutation p.E26* 0.19 TCGA-NJ-A4YI-01 12 70954616 70954616 C A PTPRB Nonsense_Mutation p.E1423* 0.35 TCGA-NJ-A4YI-01 12 81545816 81545816 G C ACSS3 Missense_Mutation p.G347R 0.30 deleterious(0) probably_damaging(1) TCGA-NJ-A4YI-01 12 94692549 94692549 G C PLXNC1 Missense_Mutation p.V1406L 0.24 tolerated(0.62) benign(0.274) TCGA-NJ-A4YI-01 13 19751590 19751590 G T TUBA3C Missense_Mutation p.S178Y 0.15 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-NJ-A4YI-01 13 19753612 19753612 G C TUBA3C Missense_Mutation p.P32R 0.38 deleterious_low_confidence(0) probably_damaging(0.924) TCGA-NJ-A4YI-01 13 25743872 25743872 G T AMER2 Missense_Mutation p.P629H 0.40 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YI-01 13 28636181 28636181 C A FLT3 Missense_Mutation p.G64V 0.36 deleterious(0) benign(0.236) TCGA-NJ-A4YI-01 13 28636182 28636182 C A FLT3 Missense_Mutation p.G64W 0.36 deleterious(0) possibly_damaging(0.822) TCGA-NJ-A4YI-01 13 43174903 43174903 G T TNFSF11 Missense_Mutation p.V135F 0.21 tolerated(0.1) benign(0.004) TCGA-NJ-A4YI-01 13 52661509 52661509 C G NEK5 Missense_Mutation p.E453Q 0.13 tolerated(0.6) benign(0.012) TCGA-NJ-A4YI-01 13 96506724 96506724 C T UGGT2 Silent p.V1338V 0.26 TCGA-NJ-A4YI-01 14 101531849 101531849 C T MIR412 RNA 0.25 TCGA-NJ-A4YI-01 14 102510336 102510336 G T DYNC1H1 Missense_Mutation p.R4213L 0.21 possibly_damaging(0.657) TCGA-NJ-A4YI-01 14 105404387 105404387 T A AHNAK2 3'UTR 0.21 TCGA-NJ-A4YI-01 14 105410888 105410888 T C AHNAK2 Missense_Mutation p.K3634E 0.19 probably_damaging(0.953) TCGA-NJ-A4YI-01 14 105410891 105410891 C G AHNAK2 Missense_Mutation p.A3633P 0.19 possibly_damaging(0.721) TCGA-NJ-A4YI-01 14 106209271 106209271 C A IGHG1 Silent p.L46L 0.27 TCGA-NJ-A4YI-01 14 106733361 106733361 C A IGHV1-24 Missense_Mutation p.G45V 0.23 deleterious(0) probably_damaging(0.991) TCGA-NJ-A4YI-01 14 107131320 107131320 C - IGHV3-66 Frame_Shift_Del p.V21Cfs*10 0.22 TCGA-NJ-A4YI-01 14 20216152 20216152 C T OR4Q3 Missense_Mutation p.A189V 0.32 deleterious(0.01) possibly_damaging(0.781) TCGA-NJ-A4YI-01 14 23853925 23853925 G T MYH6 Missense_Mutation p.A1764D 0.38 deleterious(0) probably_damaging(0.953) TCGA-NJ-A4YI-01 14 44974343 44974343 C A FSCB Missense_Mutation p.E616D 0.29 tolerated(0.12) benign(0.388) TCGA-NJ-A4YI-01 14 47351366 47351366 C G MDGA2 Missense_Mutation p.G766A 0.25 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YI-01 14 47389304 47389304 G A MDGA2 Missense_Mutation p.H717Y 0.32 tolerated(0.4) benign(0.131) TCGA-NJ-A4YI-01 14 69256459 69256460 - G ZFP36L1 Frame_Shift_Ins p.G270Rfs*21 0.32 TCGA-NJ-A4YI-01 14 75142850 75142850 G A AREL1 Silent p.L276L 0.30 TCGA-NJ-A4YI-01 14 79181278 79181278 C T NRXN3 Silent p.L241L 0.40 TCGA-NJ-A4YI-01 14 86089746 86089746 C A FLRT2 Missense_Mutation p.P630T 0.27 deleterious(0.01) probably_damaging(0.946) TCGA-NJ-A4YI-01 14 88729810 88729810 C A KCNK10 Silent p.P46P 0.39 TCGA-NJ-A4YI-01 14 92461848 92461848 C A TRIP11 Missense_Mutation p.S1635I 0.30 deleterious(0) possibly_damaging(0.718) TCGA-NJ-A4YI-01 15 22382687 22382687 C G OR4N4 Missense_Mutation p.S72C 0.09 tolerated(1) probably_damaging(0.999) TCGA-NJ-A4YI-01 15 24923186 24923186 C G NPAP1 Nonsense_Mutation p.Y724* 0.35 TCGA-NJ-A4YI-01 15 27017828 27017828 C A GABRB3 Missense_Mutation p.G58C 0.27 deleterious(0) probably_damaging(0.988) TCGA-NJ-A4YI-01 15 35176789 35176789 T A AQR Missense_Mutation p.E988D 0.20 tolerated(0.32) benign(0.02) TCGA-NJ-A4YI-01 15 41796153 41796153 C A LTK 3'UTR 0.31 TCGA-NJ-A4YI-01 15 41864670 41864670 C T TYRO3 Missense_Mutation p.R595C 0.22 tolerated(0.1) benign(0.365) TCGA-NJ-A4YI-01 15 42461932 42461932 T C VPS39 Missense_Mutation p.Y408C 0.26 deleterious(0) probably_damaging(0.992) TCGA-NJ-A4YI-01 15 42734441 42734441 G T ZNF106 Missense_Mutation p.S1175Y 0.26 deleterious(0.01) benign(0.11) TCGA-NJ-A4YI-01 15 48752480 48752480 T C FBN1 Silent p.P1753P 0.21 TCGA-NJ-A4YI-01 15 54542613 54542613 A T UNC13C Missense_Mutation p.Q1140L 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-NJ-A4YI-01 15 54685273 54685273 G T UNC13C Missense_Mutation p.D1581Y 0.36 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-NJ-A4YI-01 15 65208028 65208028 G T ANKDD1A Missense_Mutation p.A23S 0.16 deleterious(0.05) possibly_damaging(0.755) TCGA-NJ-A4YI-01 15 65623006 65623006 G T IGDCC3 Silent p.P545P 0.19 TCGA-NJ-A4YI-01 15 74467872 74467872 C T ISLR Missense_Mutation p.P225S 0.13 deleterious(0.04) benign(0.38) TCGA-NJ-A4YI-01 15 80762657 80762657 G A ARNT2 Missense_Mutation p.R98Q 0.25 deleterious(0) possibly_damaging(0.553) TCGA-NJ-A4YI-01 15 84611794 84611794 C A ADAMTSL3 Missense_Mutation p.T817K 0.23 tolerated(0.68) benign(0.421) TCGA-NJ-A4YI-01 16 10274061 10274061 C A GRIN2A Missense_Mutation p.V70L 0.25 tolerated(0.45) benign(0.036) TCGA-NJ-A4YI-01 16 17228583 17228583 G T XYLT1 Silent p.R592R 0.50 TCGA-NJ-A4YI-01 16 21078694 21078694 G A DNAH3 Missense_Mutation p.A1143V 0.11 deleterious(0.02) benign(0.008) TCGA-NJ-A4YI-01 16 2817109 2817109 C T SRRM2 Missense_Mutation p.R2194W 0.20 probably_damaging(0.997) TCGA-NJ-A4YI-01 16 2870974 2870974 C A PRSS21 Missense_Mutation p.T190N 0.14 tolerated(0.52) benign(0.017) TCGA-NJ-A4YI-01 16 28847908 28847908 G T ATXN2L Intron 0.38 TCGA-NJ-A4YI-01 16 3100309 3100309 C T MMP25 Silent p.L141L 0.11 TCGA-NJ-A4YI-01 16 4432789 4432789 A C VASN Silent p.A637A 0.62 TCGA-NJ-A4YI-01 16 4776715 4776715 C A ANKS3 Missense_Mutation p.G146W 0.38 deleterious(0) probably_damaging(1) TCGA-NJ-A4YI-01 16 55523570 55523570 C T MMP2 Silent p.S338S 0.46 TCGA-NJ-A4YI-01 16 56704483 56704483 A T MT1H Missense_Mutation p.S32C 0.35 deleterious(0) unknown(0) TCGA-NJ-A4YI-01 16 58220683 58220683 C A CSNK2A2 Silent p.L98L 0.22 TCGA-NJ-A4YI-01 16 64981474 64981474 C G CDH11 3'UTR 0.35 TCGA-NJ-A4YI-01 16 66622111 66622111 T A CMTM2 3'UTR 0.46 TCGA-NJ-A4YI-01 16 71682690 71682690 A C PHLPP2 3'UTR 0.28 TCGA-NJ-A4YI-01 17 10250059 10250059 G T MYH13 Missense_Mutation p.L401M 0.45 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YI-01 17 10265493 10265493 C G MYH13 Missense_Mutation p.Q149H 0.19 deleterious(0.01) probably_damaging(0.947) TCGA-NJ-A4YI-01 17 10351409 10351409 C T MYH4 Missense_Mutation p.R1564H 0.46 tolerated(0.09) benign(0.02) TCGA-NJ-A4YI-01 17 17718180 17718180 G A SREBF1 Silent p.F887F 0.38 TCGA-NJ-A4YI-01 17 21318754 21318754 G T KCNJ12 Missense_Mutation p.G34C 0.09 deleterious(0.02) probably_damaging(0.993) TCGA-NJ-A4YI-01 17 28539756 28539756 A T SLC6A4 Splice_Site p.X402_splice 0.16 TCGA-NJ-A4YI-01 17 3182029 3182029 G C OR3A2 Silent p.P67P 0.26 TCGA-NJ-A4YI-01 17 39279840 39279840 T C KRTAP4-12 Missense_Mutation p.T179A 0.50 deleterious(0.02) unknown(0) TCGA-NJ-A4YI-01 17 39388857 39388857 C T KRTAP9-3 Missense_Mutation p.P35L 0.16 deleterious(0) unknown(0) TCGA-NJ-A4YI-01 17 39636968 39636968 G T KRT35 Missense_Mutation p.R128S 0.37 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YI-01 17 41957272 41957272 C A MPP2 Missense_Mutation p.V411F 0.15 deleterious(0) benign(0.332) TCGA-NJ-A4YI-01 17 46804335 46804335 G A HOXB13 Silent p.S224S 0.40 TCGA-NJ-A4YI-01 17 53852152 53852152 G T PCTP Splice_Site p.X171_splice 0.31 TCGA-NJ-A4YI-01 17 56060466 56060466 T G VEZF1 Missense_Mutation p.T108P 0.17 deleterious(0.04) possibly_damaging(0.829) TCGA-NJ-A4YI-01 17 62050081 62050081 G C SCN4A Missense_Mutation p.R41G 0.24 deleterious(0.05) benign(0.205) TCGA-NJ-A4YI-01 17 63221303 63221303 G T RGS9 Nonsense_Mutation p.E531* 0.49 TCGA-NJ-A4YI-01 17 63545705 63545705 C T AXIN2 Missense_Mutation p.A297T 0.18 tolerated(0.15) possibly_damaging(0.53) TCGA-NJ-A4YI-01 17 65936752 65936752 A G BPTF Missense_Mutation p.T2153A 0.47 probably_damaging(0.998) TCGA-NJ-A4YI-01 17 72353265 72353265 G A BTBD17 Missense_Mutation p.A323V 0.50 tolerated(0.25) benign(0.019) TCGA-NJ-A4YI-01 17 72584840 72584840 G A CD300LD Silent p.I63I 0.44 TCGA-NJ-A4YI-01 17 72842922 72842922 G T GRIN2C Missense_Mutation p.D713E 0.18 tolerated(0.34) benign(0.09) TCGA-NJ-A4YI-01 17 76570861 76570861 C A DNAH17 Missense_Mutation p.R93S 0.29 benign(0.017) TCGA-NJ-A4YI-01 17 77709393 77709393 G T ENPP7 Missense_Mutation p.E317D 0.58 tolerated(0.07) benign(0.21) TCGA-NJ-A4YI-01 17 79910733 79910733 C A NOTUM 3'UTR 0.31 TCGA-NJ-A4YI-01 17 79910734 79910734 C A NOTUM 3'UTR 0.33 TCGA-NJ-A4YI-01 17 9546387 9546387 G C WDR16 Missense_Mutation p.V579L 0.60 deleterious(0.02) benign(0.405) TCGA-NJ-A4YI-01 17 960238 960238 C A ABR Missense_Mutation p.D496Y 0.16 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YI-01 18 14105358 14105358 T C ZNF519 Missense_Mutation p.H394R 0.36 deleterious(0.01) probably_damaging(0.984) TCGA-NJ-A4YI-01 18 22807168 22807168 C G ZNF521 Missense_Mutation p.E238D 0.35 tolerated_low_confidence(0.45) benign(0.005) TCGA-NJ-A4YI-01 18 28662387 28662387 A T DSC2 Nonsense_Mutation p.Y360* 0.29 TCGA-NJ-A4YI-01 18 29046556 29046556 G C DSG3 Missense_Mutation p.C492S 0.35 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YI-01 18 2946562 2946563 - A LPIN2 Intron 0.33 TCGA-NJ-A4YI-01 18 2946563 2946563 C A LPIN2 Intron 0.33 TCGA-NJ-A4YI-01 18 31322891 31322891 A T ASXL3 Missense_Mutation p.S1027C 0.38 probably_damaging(0.999) TCGA-NJ-A4YI-01 18 31324355 31324355 G C ASXL3 Missense_Mutation p.A1515P 0.45 benign(0.001) TCGA-NJ-A4YI-01 18 31325633 31325633 C A ASXL3 Missense_Mutation p.P1941T 0.36 benign(0.092) TCGA-NJ-A4YI-01 18 33691066 33691067 - AA SLC39A6 Frame_Shift_Ins p.A691Lfs*64 0.24 TCGA-NJ-A4YI-01 18 34833757 34833757 G C CELF4 3'UTR 0.35 TCGA-NJ-A4YI-01 18 42449194 42449194 G T SETBP1 Splice_Site p.X163_splice 0.31 TCGA-NJ-A4YI-01 18 42531601 42531601 C A SETBP1 Missense_Mutation p.Q766K 0.17 tolerated(0.09) probably_damaging(0.979) TCGA-NJ-A4YI-01 18 63477116 63477116 C A CDH7 Silent p.T129T 0.29 TCGA-NJ-A4YI-01 18 70532043 70532043 C T NETO1 Missense_Mutation p.A74T 0.20 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YI-01 18 7231995 7231995 G T LRRC30 Missense_Mutation p.G287C 0.26 deleterious(0) probably_damaging(1) TCGA-NJ-A4YI-01 18 72347394 72347394 G T ZNF407 Missense_Mutation p.Q1473H 0.42 deleterious(0.01) probably_damaging(0.988) TCGA-NJ-A4YI-01 18 74091247 74091247 C A ZNF516 Silent p.A941A 0.25 TCGA-NJ-A4YI-01 18 76757344 76757344 C A SALL3 3'Flank 0.34 TCGA-NJ-A4YI-01 19 13192576 13192576 G T NFIX Silent p.P387P 0.39 TCGA-NJ-A4YI-01 19 14262214 14262214 G A LPHN1 Missense_Mutation p.A1299V 0.29 tolerated(0.16) benign(0) TCGA-NJ-A4YI-01 19 19375448 19375448 C T TM6SF2 3'UTR 0.40 TCGA-NJ-A4YI-01 19 1979928 1979928 G T CSNK1G2 Missense_Mutation p.G369W 0.17 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YI-01 19 21910398 21910398 C A ZNF100 Missense_Mutation p.G239V 0.26 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YI-01 19 21910399 21910399 C A ZNF100 Missense_Mutation p.G239C 0.26 deleterious(0) probably_damaging(1) TCGA-NJ-A4YI-01 19 2247831 2247831 C T SF3A2 Silent p.P227P 0.33 TCGA-NJ-A4YI-01 19 23543874 23543874 C A ZNF91 Missense_Mutation p.G636V 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-NJ-A4YI-01 19 2916087 2916087 C T ZNF57 Nonsense_Mutation p.Q48* 0.37 TCGA-NJ-A4YI-01 19 32928131 32928131 A C DPY19L3 Missense_Mutation p.Y161S 0.19 tolerated(0.49) probably_damaging(0.983) TCGA-NJ-A4YI-01 19 36004175 36004175 C A DMKN Missense_Mutation p.S68I 0.43 tolerated(0.14) possibly_damaging(0.629) TCGA-NJ-A4YI-01 19 37210542 37210542 G T ZNF567 Nonsense_Mutation p.E275* 0.20 TCGA-NJ-A4YI-01 19 38886192 38886192 G T SPRED3 Missense_Mutation p.G214W 0.36 deleterious(0.02) benign(0.013) TCGA-NJ-A4YI-01 19 38956781 38956781 T C RYR1 Missense_Mutation p.V974A 0.21 probably_damaging(0.963) TCGA-NJ-A4YI-01 19 40328440 40328440 C T FBL Missense_Mutation p.R198H 0.21 deleterious(0.02) possibly_damaging(0.571) TCGA-NJ-A4YI-01 19 40433821 40433821 C A FCGBP Missense_Mutation p.G150C 0.35 probably_damaging(0.914) TCGA-NJ-A4YI-01 19 41444902 41444902 C G CYP2B7P RNA 0.17 TCGA-NJ-A4YI-01 19 41597750 41597750 G T CYP2A13 Missense_Mutation p.Q256H 0.42 deleterious(0.02) possibly_damaging(0.843) TCGA-NJ-A4YI-01 19 42354680 42354680 G T DMRTC2 Silent p.L301L 0.30 TCGA-NJ-A4YI-01 19 43349360 43349360 T A PSG10P RNA 0.35 TCGA-NJ-A4YI-01 19 43679524 43679524 T C PSG5 Silent p.A269A 0.33 TCGA-NJ-A4YI-01 19 43679537 43679537 G C PSG5 Missense_Mutation p.S265C 0.35 tolerated(0.06) probably_damaging(1) TCGA-NJ-A4YI-01 19 44469456 44469456 A T ZNF221 Missense_Mutation p.S94C 0.36 deleterious(0.01) possibly_damaging(0.662) TCGA-NJ-A4YI-01 19 44590787 44590787 C G ZNF284 Missense_Mutation p.L386V 0.35 deleterious(0.01) probably_damaging(0.989) TCGA-NJ-A4YI-01 19 45766420 45766420 A C MARK4 Missense_Mutation p.Q101P 0.31 deleterious(0.01) probably_damaging(0.99) TCGA-NJ-A4YI-01 19 463925 463925 G T ODF3L2 Silent p.R263R 0.36 TCGA-NJ-A4YI-01 19 47996260 47996260 C A NAPA Silent p.A173A 0.34 TCGA-NJ-A4YI-01 19 48220014 48220014 G T EHD2 Missense_Mutation p.A49S 0.26 tolerated(0.59) benign(0.006) TCGA-NJ-A4YI-01 19 48953774 48953774 C T GRWD1 Missense_Mutation p.R225W 0.28 deleterious(0.03) possibly_damaging(0.676) TCGA-NJ-A4YI-01 19 5033026 5033026 G T KDM4B Missense_Mutation p.R42L 0.31 possibly_damaging(0.494) TCGA-NJ-A4YI-01 19 50548075 50548075 G T ZNF473 Missense_Mutation p.L125F 0.35 tolerated(0.27) possibly_damaging(0.86) TCGA-NJ-A4YI-01 19 51021092 51021092 G C LRRC4B Silent p.A626A 0.44 TCGA-NJ-A4YI-01 19 51172542 51172542 C A SHANK1 Missense_Mutation p.G892V 0.44 possibly_damaging(0.694) TCGA-NJ-A4YI-01 19 51226669 51226670 - T CLEC11A 5'UTR 0.24 TCGA-NJ-A4YI-01 19 51729318 51729318 C G CD33 Silent p.T226T 0.33 TCGA-NJ-A4YI-01 19 52000637 52000637 G T SIGLEC12 Missense_Mutation p.L490M 0.32 deleterious(0.01) probably_damaging(0.987) TCGA-NJ-A4YI-01 19 5215597 5215597 C T PTPRS Missense_Mutation p.S1369N 0.28 tolerated(0.3) benign(0) TCGA-NJ-A4YI-01 19 53770578 53770578 G T VN1R4 Missense_Mutation p.S114Y 0.43 deleterious(0.01) benign(0.338) TCGA-NJ-A4YI-01 19 55143161 55143161 G T LILRB1 Missense_Mutation p.G94V 0.36 deleterious(0) probably_damaging(1) TCGA-NJ-A4YI-01 19 55147121 55147121 G T LILRB1 Intron 0.27 TCGA-NJ-A4YI-01 19 55281320 55281320 C A KIR2DL1 Silent p.V6V 0.25 TCGA-NJ-A4YI-01 19 55672063 55672063 C A DNAAF3 Silent p.G399G 0.34 TCGA-NJ-A4YI-01 19 55758645 55758645 T A PPP6R1 Intron 0.33 TCGA-NJ-A4YI-01 19 56307507 56307507 C T NLRP11 Missense_Mutation p.D761N 0.35 tolerated(0.25) benign(0.08) TCGA-NJ-A4YI-01 19 58904406 58904406 G A RPS5 Missense_Mutation p.A58T 0.49 tolerated(0.44) benign(0) TCGA-NJ-A4YI-01 19 58967770 58967770 G A ZNF324B Missense_Mutation p.G487S 0.16 deleterious(0) probably_damaging(0.933) TCGA-NJ-A4YI-01 19 6896449 6896449 C A EMR1 Silent p.A45A 0.33 TCGA-NJ-A4YI-01 19 9009642 9009642 C A MUC16 Missense_Mutation p.M13028I 0.27 possibly_damaging(0.825) TCGA-NJ-A4YI-01 19 9026276 9026276 G A MUC16 Missense_Mutation p.T12237I 0.30 possibly_damaging(0.491) TCGA-NJ-A4YI-01 19 9075111 9075111 G T MUC16 Missense_Mutation p.T4112K 0.33 unknown(0) TCGA-NJ-A4YI-01 19 9076853 9076853 G A MUC16 Silent p.T3531T 0.39 TCGA-NJ-A4YI-01 19 9204650 9204650 C A OR1M1 Missense_Mutation p.H244N 0.33 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YI-01 19 9325407 9325407 A G OR7D4 Missense_Mutation p.L36P 0.40 deleterious(0) probably_damaging(0.966) TCGA-NJ-A4YI-01 19 9361932 9361932 C T OR7E24 Silent p.S71S 0.23 TCGA-NJ-A4YI-01 1 10327515 10327515 T C KIF1B Silent p.R169R 0.32 TCGA-NJ-A4YI-01 1 110709731 110709731 G T SLC6A17 Silent p.R60R 0.53 TCGA-NJ-A4YI-01 1 112525136 112525136 C A KCND3 Missense_Mutation p.K71N 0.33 deleterious(0) benign(0.105) TCGA-NJ-A4YI-01 1 12294346 12294346 G T VPS13D Missense_Mutation p.W8L 0.30 probably_damaging(0.954) TCGA-NJ-A4YI-01 1 12294347 12294347 G T VPS13D Missense_Mutation p.W8C 0.31 probably_damaging(0.99) TCGA-NJ-A4YI-01 1 12979957 12979957 C T PRAMEF7 Silent p.F383F 0.16 TCGA-NJ-A4YI-01 1 14105507 14105507 G A PRDM2 Missense_Mutation p.R406Q 0.14 probably_damaging(1) TCGA-NJ-A4YI-01 1 152323988 152323988 G T FLG2 Missense_Mutation p.Q2092K 0.51 benign(0.066) TCGA-NJ-A4YI-01 1 152552228 152552228 C A LCE3D Missense_Mutation p.R62L 0.28 tolerated_low_confidence(0.2) unknown(0) TCGA-NJ-A4YI-01 1 152732507 152732507 G T KPRP Missense_Mutation p.C148F 0.49 tolerated(0.18) benign(0.195) TCGA-NJ-A4YI-01 1 153390627 153390627 T A S100A7A Silent p.R23R 0.49 TCGA-NJ-A4YI-01 1 153904858 153904858 C T DENND4B Missense_Mutation p.R1273H 0.09 deleterious(0.04) probably_damaging(0.991) TCGA-NJ-A4YI-01 1 155025221 155025221 G - ADAM15 Frame_Shift_Del p.D52Ifs*18 0.38 TCGA-NJ-A4YI-01 1 1562683 1562683 C T MIB2 Missense_Mutation p.T576I 0.27 tolerated(0.44) benign(0.004) TCGA-NJ-A4YI-01 1 156437901 156437901 T A MEF2D Missense_Mutation p.T480S 0.24 tolerated(0.18) benign(0.05) TCGA-NJ-A4YI-01 1 157557888 157557888 G T FCRL4 Missense_Mutation p.P110Q 0.24 deleterious(0.04) probably_damaging(1) TCGA-NJ-A4YI-01 1 158549135 158549135 G A OR10X1 Silent p.C185C 0.09 TCGA-NJ-A4YI-01 1 158746841 158746841 G T OR6N2 Missense_Mutation p.N195K 0.09 tolerated(0.16) probably_damaging(0.99) TCGA-NJ-A4YI-01 1 160054370 160054370 G A KCNJ9 Missense_Mutation p.G184R 0.19 deleterious(0.04) possibly_damaging(0.813) TCGA-NJ-A4YI-01 1 160293231 160293231 C A COPA Missense_Mutation p.W232C 0.40 deleterious(0) probably_damaging(1) TCGA-NJ-A4YI-01 1 164815962 164815962 G T PBX1 3'UTR 0.58 TCGA-NJ-A4YI-01 1 167868866 167868866 C A ADCY10 Missense_Mutation p.G146V 0.24 deleterious(0) probably_damaging(0.992) TCGA-NJ-A4YI-01 1 169528503 169528503 C A F5 Silent p.T206T 0.07 TCGA-NJ-A4YI-01 1 170695477 170695477 C A PRRX1 Silent p.P178P 0.32 TCGA-NJ-A4YI-01 1 17295692 17295692 A G CROCC Missense_Mutation p.S1720G 0.44 benign(0.294) TCGA-NJ-A4YI-01 1 176564196 176564196 C A PAPPA2 Missense_Mutation p.P486T 0.18 tolerated(0.08) benign(0.004) TCGA-NJ-A4YI-01 1 176564197 176564197 C A PAPPA2 Missense_Mutation p.P486Q 0.18 tolerated(0.07) benign(0.008) TCGA-NJ-A4YI-01 1 176740220 176740220 A T PAPPA2 Missense_Mutation p.H1540L 0.20 deleterious(0.01) benign(0.259) TCGA-NJ-A4YI-01 1 182922031 182922031 C A SHCBP1L Missense_Mutation p.D80Y 0.26 tolerated_low_confidence(0.09) benign(0.346) TCGA-NJ-A4YI-01 1 183195899 183195899 G T LAMC2 Missense_Mutation p.W378L 0.34 deleterious(0) probably_damaging(1) TCGA-NJ-A4YI-01 1 183195900 183195900 G T LAMC2 Missense_Mutation p.W378C 0.34 deleterious(0) probably_damaging(1) TCGA-NJ-A4YI-01 1 184588761 184588761 A G C1orf21 3'UTR 0.57 TCGA-NJ-A4YI-01 1 19181049 19181049 G A TAS1R2 Silent p.A305A 0.21 TCGA-NJ-A4YI-01 1 19209798 19209798 T C ALDH4A1 Missense_Mutation p.N193S 0.24 deleterious(0) probably_damaging(1) TCGA-NJ-A4YI-01 1 197062325 197062325 G T ASPM Silent p.R3051R 0.26 TCGA-NJ-A4YI-01 1 198718600 198718600 G A PTPRC Silent p.E998E 0.52 TCGA-NJ-A4YI-01 1 212529978 212529978 G T PPP2R5A Missense_Mutation p.G313V 0.08 deleterious(0.01) probably_damaging(0.989) TCGA-NJ-A4YI-01 1 214638249 214638249 C T PTPN14 5'UTR 0.29 TCGA-NJ-A4YI-01 1 215953366 215953366 G T USH2A Silent p.T3586T 0.12 TCGA-NJ-A4YI-01 1 216420087 216420087 C T USH2A Silent p.E883E 0.30 TCGA-NJ-A4YI-01 1 216595395 216595395 G T USH2A Missense_Mutation p.P95H 0.53 possibly_damaging(0.808) TCGA-NJ-A4YI-01 1 228491478 228491478 G T OBSCN Missense_Mutation p.W4614L 0.34 probably_damaging(1) TCGA-NJ-A4YI-01 1 23688985 23688985 T C ZNF436 Missense_Mutation p.Y297C 0.33 deleterious(0) possibly_damaging(0.899) TCGA-NJ-A4YI-01 1 237586456 237586456 T A RYR2 Missense_Mutation p.Y305N 0.47 probably_damaging(1) TCGA-NJ-A4YI-01 1 237711866 237711866 G T RYR2 Missense_Mutation p.Q1014H 0.11 probably_damaging(0.99) TCGA-NJ-A4YI-01 1 237886446 237886447 AG TAA RYR2 Nonsense_Mutation p.R3525* 0.20 TCGA-NJ-A4YI-01 1 24710418 24710419 TC A STPG1 Frame_Shift_Del p.K88Nfs*53 0.21 TCGA-NJ-A4YI-01 1 247769538 247769538 C A OR2G3 Silent p.S217S 0.22 TCGA-NJ-A4YI-01 1 248059170 248059170 C A OR2W3 Nonsense_Mutation p.Y94* 0.42 TCGA-NJ-A4YI-01 1 248129276 248129276 C T OR2AK2 Missense_Mutation p.L215F 0.15 tolerated(1) benign(0.33) TCGA-NJ-A4YI-01 1 248366750 248366750 C T OR2M3 Silent p.C127C 0.08 TCGA-NJ-A4YI-01 1 248737432 248737432 G A OR2T34 Silent p.I209I 0.19 TCGA-NJ-A4YI-01 1 248737539 248737539 A C OR2T34 Missense_Mutation p.C174G 0.18 deleterious(0.01) benign(0.003) TCGA-NJ-A4YI-01 1 249211655 249211655 G T PGBD2 Missense_Mutation p.R291L 0.56 tolerated(0.07) benign(0.274) TCGA-NJ-A4YI-01 1 27217224 27217224 A T GPATCH3 3'UTR 0.23 TCGA-NJ-A4YI-01 1 28339655 28339655 C A EYA3 Missense_Mutation p.A246S 0.40 tolerated(0.22) benign(0.087) TCGA-NJ-A4YI-01 1 31206674 31206674 G T LAPTM5 3'UTR 0.17 TCGA-NJ-A4YI-01 1 3703673 3703673 C T LRRC47 Missense_Mutation p.E273K 0.23 tolerated(0.17) benign(0.008) TCGA-NJ-A4YI-01 1 37270565 37270565 A T GRIK3 Intron 0.28 TCGA-NJ-A4YI-01 1 38183942 38183942 C G EPHA10 3'UTR 0.48 TCGA-NJ-A4YI-01 1 45251771 45251771 T A BEST4 Missense_Mutation p.D204V 0.36 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YI-01 1 46468496 46468496 T G MAST2 Missense_Mutation p.S230A 0.30 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-NJ-A4YI-01 1 47278284 47278284 C A CYP4B1 Missense_Mutation p.R162S 0.35 tolerated(0.09) benign(0.132) TCGA-NJ-A4YI-01 1 47395980 47395980 T A CYP4A11 Missense_Mutation p.N456I 0.25 deleterious(0) probably_damaging(0.997) TCGA-NJ-A4YI-01 1 63064423 63064423 C A ANGPTL3 Missense_Mutation p.D184E 0.37 tolerated(1) benign(0) TCGA-NJ-A4YI-01 1 67220360 67220360 G A TCTEX1D1 Missense_Mutation p.A7T 0.64 tolerated(0.13) benign(0.022) TCGA-NJ-A4YI-01 1 91405265 91405265 C A ZNF644 Missense_Mutation p.G549V 0.60 deleterious(0.02) probably_damaging(1) TCGA-NJ-A4YI-01 20 1161657 1161657 G T TMEM74B Silent p.G202G 0.40 TCGA-NJ-A4YI-01 20 139530 139530 C T DEFB127 Silent p.L55L 0.36 TCGA-NJ-A4YI-01 20 33862186 33862188 AGA - MMP24 In_Frame_Del p.K572del 0.38 TCGA-NJ-A4YI-01 20 35504605 35504605 C A TLDC2 Silent p.R10R 0.31 TCGA-NJ-A4YI-01 20 37518270 37518270 G A PPP1R16B Missense_Mutation p.D95N 0.35 tolerated(0.12) probably_damaging(1) TCGA-NJ-A4YI-01 20 42973947 42973947 C A R3HDML Silent p.T186T 0.32 TCGA-NJ-A4YI-01 20 49576319 49576319 G A MOCS3 Missense_Mutation p.A314T 0.40 tolerated(0.46) benign(0.015) TCGA-NJ-A4YI-01 20 52786159 52786159 G T CYP24A1 Nonsense_Mutation p.Y204* 0.28 TCGA-NJ-A4YI-01 20 55910931 55910931 T A SPO11 Missense_Mutation p.C238S 0.29 deleterious(0.04) benign(0.269) TCGA-NJ-A4YI-01 20 57768035 57768035 C A ZNF831 Missense_Mutation p.A654E 0.32 tolerated(0.46) benign(0.102) TCGA-NJ-A4YI-01 20 60773745 60773745 G - MTG2 Frame_Shift_Del p.C175Sfs*30 0.21 TCGA-NJ-A4YI-01 20 62038174 62038174 C A KCNQ2 Silent p.L814L 0.29 TCGA-NJ-A4YI-01 20 62322178 62322178 C T RTEL1 Missense_Mutation p.P836S 0.40 tolerated(0.59) benign(0.001) TCGA-NJ-A4YI-01 20 62891624 62891624 A T PCMTD2 Silent p.L102L 0.32 TCGA-NJ-A4YI-01 21 11039369 11039369 G T BAGE2 RNA 0.04 TCGA-NJ-A4YI-01 21 31913989 31913989 G T KRTAP19-6 Missense_Mutation p.S55Y 0.32 deleterious_low_confidence(0) unknown(0) TCGA-NJ-A4YI-01 21 37418170 37418170 C T SETD4 Missense_Mutation p.E146K 0.29 tolerated(0.1) benign(0.012) TCGA-NJ-A4YI-01 21 38117315 38117315 C T SIM2 Missense_Mutation p.A485V 0.32 tolerated_low_confidence(0.06) benign(0.297) TCGA-NJ-A4YI-01 21 38865332 38865332 T G DYRK1A Missense_Mutation p.I322S 0.14 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YI-01 21 46117389 46117389 G T KRTAP10-12 Missense_Mutation p.Q91H 0.18 deleterious(0.01) unknown(0) TCGA-NJ-A4YI-01 21 47541482 47541482 G A COL6A2 Missense_Mutation p.D491N 0.42 tolerated(0.1) benign(0.032) TCGA-NJ-A4YI-01 21 47545217 47545217 G T COL6A2 Missense_Mutation p.G603V 0.35 deleterious(0) probably_damaging(1) TCGA-NJ-A4YI-01 22 17073445 17073445 C A CCT8L2 5'UTR 0.24 TCGA-NJ-A4YI-01 22 21336744 21336744 G T LZTR1 Silent p.V28V 0.19 TCGA-NJ-A4YI-01 22 26222421 26222421 G A MYO18B Missense_Mutation p.G914D 0.17 deleterious(0) probably_damaging(0.954) TCGA-NJ-A4YI-01 22 32108337 32108337 C A PRR14L Nonsense_Mutation p.G1830* 0.26 TCGA-NJ-A4YI-01 22 39884102 39884102 G T MGAT3 Silent p.P250P 0.27 TCGA-NJ-A4YI-01 22 40015368 40015368 C A CACNA1I Missense_Mutation p.T179N 0.24 deleterious(0) probably_damaging(0.989) TCGA-NJ-A4YI-01 22 40662101 40662101 T G TNRC6B Missense_Mutation p.W623G 0.28 deleterious(0) probably_damaging(0.995) TCGA-NJ-A4YI-01 22 41736141 41736141 G A ZC3H7B Missense_Mutation p.E380K 0.35 tolerated(0.73) benign(0.047) TCGA-NJ-A4YI-01 22 41980548 41980548 G A PMM1 Nonsense_Mutation p.R89* 0.30 TCGA-NJ-A4YI-01 22 42537649 42537649 T A NDUFA6-AS1 3'Flank 0.23 TCGA-NJ-A4YI-01 22 43870810 43870810 G T MPPED1 Missense_Mutation p.V201L 0.38 tolerated(0.4) benign(0.271) TCGA-NJ-A4YI-01 2 105858853 105858853 C A GPR45 Missense_Mutation p.P180T 0.32 tolerated(0.11) benign(0.089) TCGA-NJ-A4YI-01 2 109347872 109347872 A G RANBP2 Missense_Mutation p.Y116C 0.36 deleterious(0) benign(0.413) TCGA-NJ-A4YI-01 2 11426679 11426679 C G ROCK2 Missense_Mutation p.G104R 0.14 deleterious(0) probably_damaging(1) TCGA-NJ-A4YI-01 2 114340670 114340670 A T MIR1302-3 RNA 0.23 TCGA-NJ-A4YI-01 2 1251197 1251197 C A SNTG2 Nonsense_Mutation p.Y329* 0.32 TCGA-NJ-A4YI-01 2 141294257 141294257 G T LRP1B Missense_Mutation p.A2512D 0.25 benign(0.003) TCGA-NJ-A4YI-01 2 149227562 149227562 G T MBD5 Nonsense_Mutation p.G684* 0.40 TCGA-NJ-A4YI-01 2 152544861 152544861 G T NEB Missense_Mutation p.P787Q 0.36 probably_damaging(0.997) TCGA-NJ-A4YI-01 2 155115634 155115634 C A GALNT13 Missense_Mutation p.L320I 0.17 deleterious(0) benign(0.126) TCGA-NJ-A4YI-01 2 158272292 158272292 C A CYTIP Missense_Mutation p.G326V 0.34 deleterious(0) probably_damaging(1) TCGA-NJ-A4YI-01 2 162273557 162273557 C T TBR1 Silent p.P212P 0.25 TCGA-NJ-A4YI-01 2 164467333 164467333 T A FIGN Missense_Mutation p.S337C 0.32 deleterious(0.01) possibly_damaging(0.846) TCGA-NJ-A4YI-01 2 165956856 165956856 C A SCN3A Missense_Mutation p.A1308S 0.19 deleterious(0.01) probably_damaging(0.978) TCGA-NJ-A4YI-01 2 190728561 190728561 G T PMS1 Missense_Mutation p.G650V 0.28 deleterious(0.04) possibly_damaging(0.461) TCGA-NJ-A4YI-01 2 1983501 1983501 C - MYT1L Frame_Shift_Del p.V17Ffs*64 0.32 TCGA-NJ-A4YI-01 2 206364714 206364714 G T PARD3B Missense_Mutation p.D985Y 0.27 tolerated(0.21) possibly_damaging(0.502) TCGA-NJ-A4YI-01 2 219483388 219483388 G T PLCD4 Missense_Mutation p.G90C 0.26 tolerated(1) probably_damaging(0.987) TCGA-NJ-A4YI-01 2 225266225 225266225 G T FAM124B Missense_Mutation p.D87E 0.11 tolerated(0.4) benign(0.061) TCGA-NJ-A4YI-01 2 233633139 233633139 C T KCNJ13 Missense_Mutation p.C282Y 0.31 tolerated(0.08) benign(0.083) TCGA-NJ-A4YI-01 2 234526615 234526615 C A UGT1A8 Silent p.R88R 0.33 TCGA-NJ-A4YI-01 2 25470966 25470966 C A DNMT3A Silent p.V265V 0.35 TCGA-NJ-A4YI-01 2 27121537 27121537 T C DPYSL5 Missense_Mutation p.L57P 0.38 deleterious(0) probably_damaging(1) TCGA-NJ-A4YI-01 2 27121538 27121538 G T DPYSL5 Silent p.L57L 0.38 TCGA-NJ-A4YI-01 2 42578485 42578486 CA - COX7A2L Frame_Shift_Del p.V73Afs*10 0.19 TCGA-NJ-A4YI-01 2 43019654 43019654 C A HAAO Missense_Mutation p.R8M 0.34 deleterious(0.02) benign(0.254) TCGA-NJ-A4YI-01 2 44049935 44049935 C A ABCG5 Splice_Site p.X488_splice 0.25 TCGA-NJ-A4YI-01 2 44115667 44115667 C A LRPPRC 3'UTR 0.35 TCGA-NJ-A4YI-01 2 50280515 50280515 G T NRXN1 Missense_Mutation p.T1381N 0.31 deleterious(0) possibly_damaging(0.786) TCGA-NJ-A4YI-01 2 66664824 66664824 C A MEIS1 Intron 0.41 TCGA-NJ-A4YI-01 2 71303805 71303805 G A NAGK Missense_Mutation p.V293I 0.10 tolerated(0.37) benign(0.005) TCGA-NJ-A4YI-01 2 79350388 79350388 G C REG1A 3'UTR 0.35 TCGA-NJ-A4YI-01 2 79364418 79364418 C T REG1P RNA 0.27 TCGA-NJ-A4YI-01 2 86258474 86258474 G A POLR1A Silent p.T1519T 0.39 TCGA-NJ-A4YI-01 2 89544427 89544427 C A IGKV2-30 Missense_Mutation p.G66V 0.30 deleterious(0) benign(0.424) TCGA-NJ-A4YI-01 3 115395186 115395186 C G GAP43 Silent p.A155A 0.32 TCGA-NJ-A4YI-01 3 119886981 119886981 C A GPR156 Missense_Mutation p.G448V 0.40 tolerated(0.72) benign(0.002) TCGA-NJ-A4YI-01 3 121151117 121151117 A T POLQ 3'UTR 0.29 TCGA-NJ-A4YI-01 3 121350731 121350731 C T HCLS1 Missense_Mutation p.G475R 0.30 deleterious(0) probably_damaging(0.988) TCGA-NJ-A4YI-01 3 129270016 129270016 G A H1FOO Missense_Mutation p.G292R 0.23 tolerated(0.67) benign(0.015) TCGA-NJ-A4YI-01 3 132415659 132415659 T G NPHP3 Splice_Site p.X697_splice 0.38 TCGA-NJ-A4YI-01 3 132437876 132437876 C A NPHP3 Missense_Mutation p.G211V 0.34 tolerated(0.18) benign(0.157) TCGA-NJ-A4YI-01 3 133921683 133921683 G A RYK Missense_Mutation p.R225C 0.12 tolerated(0.09) benign(0.011) TCGA-NJ-A4YI-01 3 148899834 148899834 C T CP Missense_Mutation p.G838R 0.25 deleterious(0) probably_damaging(1) TCGA-NJ-A4YI-01 3 15300517 15300517 G A SH3BP5 Missense_Mutation p.T237I 0.43 tolerated(0.14) benign(0.016) TCGA-NJ-A4YI-01 3 156249251 156249251 C A KCNAB1 Missense_Mutation p.P379T 0.37 tolerated(0.38) benign(0.01) TCGA-NJ-A4YI-01 3 184071074 184071079 CTCCTG - CLCN2 In_Frame_Del p.Q663_E664del 0.22 TCGA-NJ-A4YI-01 3 19295156 19295156 C T KCNH8 Silent p.F29F 0.15 TCGA-NJ-A4YI-01 3 196089298 196089298 C G UBXN7 Silent p.P365P 0.38 TCGA-NJ-A4YI-01 3 33879712 33879712 G C PDCD6IP Missense_Mutation p.M363I 0.05 deleterious(0.04) benign(0.054) TCGA-NJ-A4YI-01 3 38411653 38411653 A G XYLB Silent p.S251S 0.42 TCGA-NJ-A4YI-01 3 38651407 38651407 G T SCN5A Missense_Mutation p.A251D 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-NJ-A4YI-01 3 38739417 38739417 G T SCN10A Nonsense_Mutation p.S1765* 0.15 TCGA-NJ-A4YI-01 3 38797450 38797450 C A SCN10A Splice_Site p.X431_splice 0.39 TCGA-NJ-A4YI-01 3 44491060 44491060 C A ZNF445 Missense_Mutation p.W292C 0.32 deleterious(0.01) possibly_damaging(0.759) TCGA-NJ-A4YI-01 3 48445962 48445962 C G PLXNB1 Missense_Mutation p.Q2113H 0.25 deleterious(0) probably_damaging(0.997) TCGA-NJ-A4YI-01 3 48691216 48691216 C T CELSR3 Missense_Mutation p.A1762T 0.40 tolerated(0.23) benign(0) TCGA-NJ-A4YI-01 3 50355550 50355550 C T HYAL2 3'UTR 0.19 TCGA-NJ-A4YI-01 3 51661703 51661703 A G RAD54L2 Missense_Mutation p.N92D 0.22 tolerated_low_confidence(0.53) benign(0.006) TCGA-NJ-A4YI-01 3 51694122 51694122 A T RAD54L2 Missense_Mutation p.M1133L 0.17 tolerated(0.12) benign(0.001) TCGA-NJ-A4YI-01 3 53925935 53925935 G A SELK 5'UTR 0.50 TCGA-NJ-A4YI-01 3 54952669 54952669 G A LRTM1 Silent p.A285A 0.30 TCGA-NJ-A4YI-01 3 54952670 54952670 G T LRTM1 Missense_Mutation p.A285D 0.31 deleterious(0) probably_damaging(1) TCGA-NJ-A4YI-01 3 58385031 58385031 G T PXK Missense_Mutation p.V370L 0.32 tolerated(0.26) benign(0.105) TCGA-NJ-A4YI-01 3 64619399 64619399 C A ADAMTS9 Silent p.V671V 0.33 TCGA-NJ-A4YI-01 3 77638085 77638085 G T ROBO2 Splice_Site p.X911_splice 0.32 TCGA-NJ-A4YI-01 3 96706772 96706772 G T EPHA6 Missense_Mutation p.W350L 0.25 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YI-01 3 97888342 97888342 G C OR5H15 Missense_Mutation p.A267P 0.24 tolerated(0.06) possibly_damaging(0.905) TCGA-NJ-A4YI-01 4 100871390 100871390 G A H2AFZ 5'UTR 0.23 TCGA-NJ-A4YI-01 4 10445154 10445154 C A ZNF518B Missense_Mutation p.L933F 0.25 deleterious(0) probably_damaging(0.997) TCGA-NJ-A4YI-01 4 115997578 115997578 G T NDST4 Silent p.T205T 0.17 TCGA-NJ-A4YI-01 4 126408608 126408608 A T FAT4 Missense_Mutation p.I4309F 0.20 benign(0.345) TCGA-NJ-A4YI-01 4 129208545 129208545 C A PGRMC2 Missense_Mutation p.S158I 0.24 tolerated(0.08) possibly_damaging(0.693) TCGA-NJ-A4YI-01 4 134071984 134071984 G C PCDH10 Missense_Mutation p.R230P 0.22 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YI-01 4 142053974 142053974 G T RNF150 5'UTR 0.38 TCGA-NJ-A4YI-01 4 151520234 151520234 G A LRBA Missense_Mutation p.R1991C 0.48 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YI-01 4 166307423 166307423 G T CPE Intron 0.35 TCGA-NJ-A4YI-01 4 177713413 177713413 A G VEGFC Missense_Mutation p.L18P 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.885) TCGA-NJ-A4YI-01 4 187524354 187524354 T A FAT1 Missense_Mutation p.R3776W 0.14 probably_damaging(0.993) TCGA-NJ-A4YI-01 4 187557216 187557216 C A FAT1 Silent p.V1382V 0.24 TCGA-NJ-A4YI-01 4 23830043 23830043 G T PPARGC1A Nonsense_Mutation p.S246* 0.47 TCGA-NJ-A4YI-01 4 26487330 26487330 A G CCKAR Silent p.F185F 0.45 TCGA-NJ-A4YI-01 4 37841704 37841704 G T PGM2 Missense_Mutation p.G181V 0.42 deleterious(0) probably_damaging(0.986) TCGA-NJ-A4YI-01 4 40827944 40827944 G A APBB2 Silent p.H592H 0.49 TCGA-NJ-A4YI-01 4 57189575 57189575 G T KIAA1211 Missense_Mutation p.D1074Y 0.17 deleterious(0) probably_damaging(0.934) TCGA-NJ-A4YI-01 4 5960949 5960949 G T C4orf50 3'UTR 0.25 TCGA-NJ-A4YI-01 4 70455183 70455183 G T UGT2A1 Silent p.V663V 0.23 TCGA-NJ-A4YI-01 4 87968555 87968555 A T AFF1 Missense_Mutation p.S290C 0.46 deleterious(0.02) possibly_damaging(0.747) TCGA-NJ-A4YI-01 4 89618482 89618482 C T NAP1L5 Missense_Mutation p.E142K 0.18 tolerated(0.28) unknown(0) TCGA-NJ-A4YI-01 4 9784336 9784336 C A DRD5 Missense_Mutation p.S228Y 0.24 deleterious(0) probably_damaging(0.992) TCGA-NJ-A4YI-01 5 10981908 10981908 C A CTNND2 Missense_Mutation p.A1132S 0.37 tolerated(0.76) benign(0.002) TCGA-NJ-A4YI-01 5 126860299 126860299 G C PRRC1 Missense_Mutation p.Q60H 0.35 tolerated_low_confidence(0.57) possibly_damaging(0.497) TCGA-NJ-A4YI-01 5 127466899 127466899 G T SLC12A2 Splice_Site p.X396_splice 0.39 TCGA-NJ-A4YI-01 5 138266206 138266206 G A CTNNA1 Silent p.A685A 0.36 TCGA-NJ-A4YI-01 5 140167731 140167731 G A PCDHA1 Missense_Mutation p.R619H 0.17 tolerated_low_confidence(0.09) benign(0.139) TCGA-NJ-A4YI-01 5 140590530 140590530 A T PCDHB12 Missense_Mutation p.D684V 0.37 deleterious_low_confidence(0) possibly_damaging(0.852) TCGA-NJ-A4YI-01 5 140745211 140745211 C - PCDHGA5 Frame_Shift_Del p.L440* 0.29 TCGA-NJ-A4YI-01 5 140762682 140762682 G T PCDHGA7 Silent p.T72T 0.33 TCGA-NJ-A4YI-01 5 140762746 140762746 G A PCDHGA7 Missense_Mutation p.E94K 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.58) TCGA-NJ-A4YI-01 5 140768900 140768900 C A PCDHGB4 Silent p.G483G 0.14 TCGA-NJ-A4YI-01 5 141357914 141357914 G T RNF14 Missense_Mutation p.R118L 0.32 tolerated(0.09) benign(0.115) TCGA-NJ-A4YI-01 5 14280470 14280470 C T TRIO Missense_Mutation p.P91L 0.41 probably_damaging(0.998) TCGA-NJ-A4YI-01 5 149001340 149001340 G T ARHGEF37 Silent p.L350L 0.33 TCGA-NJ-A4YI-01 5 158223456 158223456 G T EBF1 Missense_Mutation p.P269Q 0.11 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YI-01 5 168112771 168112771 G T SLIT3 Missense_Mutation p.T1159N 0.29 deleterious(0) benign(0.395) TCGA-NJ-A4YI-01 5 168139308 168139308 G T SLIT3 Missense_Mutation p.D845E 0.20 deleterious(0.02) benign(0.199) TCGA-NJ-A4YI-01 5 174869390 174869390 G T DRD1 Missense_Mutation p.A238D 0.31 deleterious(0) probably_damaging(1) TCGA-NJ-A4YI-01 5 175110441 175110441 C A HRH2 Missense_Mutation p.L69I 0.38 tolerated(0.2) possibly_damaging(0.773) TCGA-NJ-A4YI-01 5 176951843 176951843 A G FAM193B Silent p.L547L 0.18 TCGA-NJ-A4YI-01 5 178552098 178552098 G T ADAMTS2 Missense_Mutation p.P945Q 0.28 tolerated(0.07) benign(0.234) TCGA-NJ-A4YI-01 5 31302237 31302237 T C CDH6 Silent p.T277T 0.18 TCGA-NJ-A4YI-01 5 33936956 33936956 G A RXFP3 Silent p.T37T 0.23 TCGA-NJ-A4YI-01 5 36117968 36117968 C T LMBRD2 Missense_Mutation p.V391M 0.18 deleterious(0.03) possibly_damaging(0.817) TCGA-NJ-A4YI-01 5 40692160 40692160 C A PTGER4 Silent p.R383R 0.32 TCGA-NJ-A4YI-01 5 52206125 52206125 T C ITGA1 Missense_Mutation p.V578A 0.36 deleterious(0) probably_damaging(0.936) TCGA-NJ-A4YI-01 5 54416314 54416314 C A CDC20B Missense_Mutation p.R427L 0.38 tolerated(0.78) benign(0.003) TCGA-NJ-A4YI-01 5 56778011 56778011 G T ACTBL2 Missense_Mutation p.A175D 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.893) TCGA-NJ-A4YI-01 5 70785408 70785408 G C BDP1 Missense_Mutation p.R464T 0.43 deleterious(0) possibly_damaging(0.888) TCGA-NJ-A4YI-01 5 72469541 72469541 G T TMEM174 Silent p.L157L 0.39 TCGA-NJ-A4YI-01 5 7773092 7773092 C A ADCY2 Missense_Mutation p.F754L 0.35 deleterious(0.02) possibly_damaging(0.562) TCGA-NJ-A4YI-01 5 7773093 7773093 C A ADCY2 Missense_Mutation p.L755M 0.35 deleterious(0) probably_damaging(0.987) TCGA-NJ-A4YI-01 5 78351669 78351669 G A DMGDH Silent p.I113I 0.19 TCGA-NJ-A4YI-01 5 79950566 79950566 C A MSH3 Missense_Mutation p.A7E 0.43 tolerated_low_confidence(0.1) benign(0.174) TCGA-NJ-A4YI-01 5 80946159 80946159 C A SSBP2 Splice_Site p.X21_splice 0.38 TCGA-NJ-A4YI-01 6 117243240 117243240 C T RFX6 Missense_Mutation p.L455F 0.57 deleterious(0) probably_damaging(0.973) TCGA-NJ-A4YI-01 6 117243241 117243241 T A RFX6 Missense_Mutation p.L455H 0.58 deleterious(0) probably_damaging(0.99) TCGA-NJ-A4YI-01 6 117888158 117888158 C T GOPC Missense_Mutation p.E373K 0.63 deleterious(0.01) possibly_damaging(0.829) TCGA-NJ-A4YI-01 6 146264551 146264551 C G SHPRH Missense_Mutation p.D656H 0.30 deleterious(0.01) possibly_damaging(0.695) TCGA-NJ-A4YI-01 6 152651554 152651554 C A SYNE1 Missense_Mutation p.V4756F 0.48 benign(0.157) TCGA-NJ-A4YI-01 6 155486469 155486469 G C TIAM2 Missense_Mutation p.G763R 0.50 deleterious(0) possibly_damaging(0.563) TCGA-NJ-A4YI-01 6 159172958 159172958 A T SYTL3 Splice_Site p.X345_splice 0.50 TCGA-NJ-A4YI-01 6 161505591 161505591 G A MAP3K4 Missense_Mutation p.E772K 0.53 tolerated(0.33) benign(0.009) TCGA-NJ-A4YI-01 6 1624766 1624766 G A GMDS Nonsense_Mutation p.Q333* 0.12 TCGA-NJ-A4YI-01 6 165706720 165706720 C A C6orf118 Intron 0.44 TCGA-NJ-A4YI-01 6 168944337 168944337 G T SMOC2 Missense_Mutation p.G166C 0.33 deleterious(0.01) probably_damaging(0.944) TCGA-NJ-A4YI-01 6 168944338 168944338 G T SMOC2 Missense_Mutation p.G166V 0.31 deleterious(0.01) possibly_damaging(0.802) TCGA-NJ-A4YI-01 6 28554455 28554455 G A SCAND3 Nonsense_Mutation p.Q14* 0.51 TCGA-NJ-A4YI-01 6 29634017 29634017 C G MOG Missense_Mutation p.F175L 0.20 tolerated(0.25) possibly_damaging(0.452) TCGA-NJ-A4YI-01 6 36930854 36930854 A G PI16 Missense_Mutation p.T246A 0.19 deleterious(0.02) benign(0.113) TCGA-NJ-A4YI-01 6 39512397 39512397 C A KIF6 Nonsense_Mutation p.E454* 0.27 TCGA-NJ-A4YI-01 6 40400490 40400490 C A LRFN2 Silent p.R121R 0.41 TCGA-NJ-A4YI-01 6 42797515 42797515 G T GLTSCR1L Nonsense_Mutation p.G482* 0.45 TCGA-NJ-A4YI-01 6 49753951 49753951 C T PGK2 Missense_Mutation p.G317D 0.19 deleterious(0.02) probably_damaging(0.993) TCGA-NJ-A4YI-01 6 54095673 54095673 G A MLIP Silent p.Q425Q 0.25 TCGA-NJ-A4YI-01 6 56504401 56504401 G A DST Silent p.S365S 0.40 TCGA-NJ-A4YI-01 6 56846632 56846632 T A BEND6 Missense_Mutation p.D8E 0.23 tolerated_low_confidence(0.14) benign(0.001) TCGA-NJ-A4YI-01 6 6305759 6305759 G C F13A1 Silent p.V48V 0.42 TCGA-NJ-A4YI-01 6 7585052 7585052 G T DSP Silent p.L2519L 0.20 TCGA-NJ-A4YI-01 6 96651655 96651655 G A FUT9 Silent p.E208E 0.58 TCGA-NJ-A4YI-01 7 100552055 100552055 T A MUC3A Missense_Mutation p.I269N 0.23 deleterious(0.01) benign(0.134) TCGA-NJ-A4YI-01 7 100675475 100675475 G T MUC17 Missense_Mutation p.A260S 0.38 benign(0.24) TCGA-NJ-A4YI-01 7 106526602 106526602 C A PIK3CG Missense_Mutation p.F965L 0.25 deleterious(0.04) benign(0.314) TCGA-NJ-A4YI-01 7 107431510 107431510 G T SLC26A3 Missense_Mutation p.L185I 0.49 deleterious(0.01) benign(0.355) TCGA-NJ-A4YI-01 7 107790357 107790357 A T NRCAM Nonstop_Mutation p.*1305Kext*42 0.43 TCGA-NJ-A4YI-01 7 121738922 121738922 T A AASS Splice_Site p.X469_splice 0.49 TCGA-NJ-A4YI-01 7 123277154 123277154 T C ASB15 3'UTR 0.40 TCGA-NJ-A4YI-01 7 136588040 136588040 C A CHRM2 Intron 0.33 TCGA-NJ-A4YI-01 7 142239628 142239628 G A TRBV9 Silent p.S84S 0.34 TCGA-NJ-A4YI-01 7 142378610 142378610 T C MTRNR2L6 3'Flank 0.48 TCGA-NJ-A4YI-01 7 142448495 142448495 G T TRBV29-1 Missense_Mutation p.R30L 0.29 tolerated(0.31) benign(0.017) TCGA-NJ-A4YI-01 7 142460755 142460755 C A PRSS1 Missense_Mutation p.L210I 0.14 deleterious(0.02) possibly_damaging(0.892) TCGA-NJ-A4YI-01 7 146536856 146536856 G A CNTNAP2 Missense_Mutation p.D88N 0.14 deleterious(0.03) probably_damaging(0.954) TCGA-NJ-A4YI-01 7 147259229 147259229 G T CNTNAP2 Splice_Site p.X593_splice 0.25 TCGA-NJ-A4YI-01 7 148702998 148702998 A T PDIA4 Missense_Mutation p.Y427N 0.36 deleterious(0.04) benign(0.293) TCGA-NJ-A4YI-01 7 148771595 148771595 T C ZNF786 Missense_Mutation p.I61V 0.20 deleterious(0.02) benign(0.266) TCGA-NJ-A4YI-01 7 154875878 154875878 C - HTR5A Frame_Shift_Del p.K253Nfs*84 0.25 TCGA-NJ-A4YI-01 7 20685413 20685413 C A ABCB5 Missense_Mutation p.A238D 0.18 deleterious(0) probably_damaging(0.983) TCGA-NJ-A4YI-01 7 38937723 38937723 C A VPS41 Missense_Mutation p.G10W 0.12 deleterious(0.02) benign(0.109) TCGA-NJ-A4YI-01 7 4862170 4862170 C A RADIL Silent p.S490S 0.20 TCGA-NJ-A4YI-01 7 50023055 50023055 C G ZPBP Missense_Mutation p.E282Q 0.19 tolerated(0.2) benign(0.175) TCGA-NJ-A4YI-01 7 5331444 5331444 G T SLC29A4 Missense_Mutation p.G179V 0.38 deleterious(0) probably_damaging(0.988) TCGA-NJ-A4YI-01 7 64453191 64453191 C G ERV3-1 Missense_Mutation p.D72H 0.35 tolerated(0.06) possibly_damaging(0.736) TCGA-NJ-A4YI-01 7 72658726 72658726 G T GTF2IRD2P1 RNA 0.32 TCGA-NJ-A4YI-01 7 74148302 74148302 C T GTF2I Missense_Mutation p.L448F 0.18 deleterious(0.02) possibly_damaging(0.575) TCGA-NJ-A4YI-01 7 7613240 7613240 G T MIOS Silent p.T378T 0.42 TCGA-NJ-A4YI-01 7 7613241 7613241 G C MIOS Missense_Mutation p.E379Q 0.42 tolerated(0.37) possibly_damaging(0.681) TCGA-NJ-A4YI-01 7 77756639 77756639 G T MAGI2 Missense_Mutation p.Q1100K 0.37 tolerated(0.07) benign(0.08) TCGA-NJ-A4YI-01 7 8126267 8126267 A G GLCCI1 3'UTR 0.24 TCGA-NJ-A4YI-01 7 82451676 82451676 C G PCLO Intron 0.29 TCGA-NJ-A4YI-01 7 83095868 83095868 T A SEMA3E Missense_Mutation p.H129L 0.35 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YI-01 7 89939508 89939508 G T C7orf63 Missense_Mutation p.A928S 0.32 tolerated_low_confidence(0.27) benign(0.017) TCGA-NJ-A4YI-01 8 101648225 101648225 A G SNX31 Silent p.F52F 0.44 TCGA-NJ-A4YI-01 8 10396326 10396326 T C PRSS55 3'UTR 0.57 TCGA-NJ-A4YI-01 8 10468894 10468894 G T RP1L1 Nonsense_Mutation p.S905* 0.44 TCGA-NJ-A4YI-01 8 104778578 104778578 A G RIMS2 Missense_Mutation p.R171G 0.45 tolerated_low_confidence(0.1) benign(0.131) TCGA-NJ-A4YI-01 8 113303893 113303893 G T CSMD3 Silent p.A2940A 0.22 TCGA-NJ-A4YI-01 8 125463071 125463071 C T TRMT12 5'UTR 0.48 TCGA-NJ-A4YI-01 8 139838901 139838901 C A COL22A1 Missense_Mutation p.Q323H 0.17 unknown(0) TCGA-NJ-A4YI-01 8 145947736 145947736 C A ZNF251 Nonsense_Mutation p.E437* 0.44 TCGA-NJ-A4YI-01 8 17613307 17613307 C T MTUS1 Missense_Mutation p.D4N 0.20 deleterious(0.02) possibly_damaging(0.675) TCGA-NJ-A4YI-01 8 22423981 22423981 C T SORBS3 Silent p.Y358Y 0.41 TCGA-NJ-A4YI-01 8 35583848 35583848 A T UNC5D Silent p.G494G 0.58 TCGA-NJ-A4YI-01 8 39613319 39613319 C T ADAM2 Silent p.V575V 0.30 TCGA-NJ-A4YI-01 8 42296978 42296978 C A SLC20A2 Silent p.R308R 0.31 TCGA-NJ-A4YI-01 8 42296979 42296979 C A SLC20A2 Missense_Mutation p.R308L 0.29 tolerated(0.27) benign(0.011) TCGA-NJ-A4YI-01 8 57358273 57358273 G A PENK Intron 0.13 TCGA-NJ-A4YI-01 8 67357514 67357514 G T ADHFE1 Missense_Mutation p.G139C 0.23 deleterious(0) probably_damaging(1) TCGA-NJ-A4YI-01 8 72938258 72938258 G T TRPA1 Silent p.R996R 0.51 TCGA-NJ-A4YI-01 8 87559999 87559999 G T CPNE3 Splice_Site p.X293_splice 0.52 TCGA-NJ-A4YI-01 8 88885699 88885699 G T DCAF4L2 Missense_Mutation p.S167R 0.38 deleterious(0.02) benign(0.374) TCGA-NJ-A4YI-01 8 94935532 94935532 G T PDP1 Missense_Mutation p.L440F 0.45 deleterious(0) probably_damaging(0.983) TCGA-NJ-A4YI-01 9 100326379 100326379 G T TMOD1 Missense_Mutation p.V183L 0.19 deleterious(0.04) benign(0) TCGA-NJ-A4YI-01 9 102626025 102626025 C - NR4A3 Frame_Shift_Del p.L598Wfs*2 0.25 TCGA-NJ-A4YI-01 9 107457179 107457179 C A OR13D1 Nonsense_Mutation p.C159* 0.22 TCGA-NJ-A4YI-01 9 113196658 113196658 G T SVEP1 Missense_Mutation p.L1673M 0.13 probably_damaging(0.934) TCGA-NJ-A4YI-01 9 120476617 120476617 G T TLR4 Silent p.V737V 0.12 TCGA-NJ-A4YI-01 9 129870489 129870489 G T ANGPTL2 Missense_Mutation p.S174R 0.22 tolerated(0.08) benign(0.107) TCGA-NJ-A4YI-01 9 139911369 139911369 T C ABCA2 Intron 0.45 TCGA-NJ-A4YI-01 9 140953137 140953137 C A CACNA1B Nonsense_Mutation p.Y1475* 0.45 TCGA-NJ-A4YI-01 9 22006055 22006055 G A CDKN2B Silent p.P116P 0.33 TCGA-NJ-A4YI-01 9 32544314 32544314 G A TOPORS Missense_Mutation p.S70L 0.36 deleterious(0) probably_damaging(0.972) TCGA-NJ-A4YI-01 9 79118131 79118131 C G GCNT1 Silent p.L278L 0.16 TCGA-NJ-A4YI-01 9 96435944 96435944 C A PHF2 Missense_Mutation p.S809Y 0.19 deleterious(0) unknown(0) TCGA-NJ-A4YI-01 9 97062180 97062180 G T ZNF169 Missense_Mutation p.G114C 0.24 tolerated(0.19) benign(0.011) TCGA-NJ-A4YI-01 X 100509461 100509461 C A DRP2 Missense_Mutation p.N675K 0.23 deleterious(0) possibly_damaging(0.73) TCGA-NJ-A4YI-01 X 100912119 100912119 T G ARMCX2 Silent p.A152A 0.47 TCGA-NJ-A4YI-01 X 106843916 106843916 C A FRMPD3 Missense_Mutation p.P916T 0.42 tolerated_low_confidence(0.12) benign(0.431) TCGA-NJ-A4YI-01 X 107224903 107224903 T A TEX13B Missense_Mutation p.H152L 0.52 deleterious(0.05) benign(0.076) TCGA-NJ-A4YI-01 X 125686544 125686544 G T DCAF12L1 Silent p.V16V 0.40 TCGA-NJ-A4YI-01 X 14625361 14625361 T G GLRA2 Missense_Mutation p.L229R 0.28 deleterious(0.01) probably_damaging(1) TCGA-NJ-A4YI-01 X 147014252 147014252 G A FMR1 Missense_Mutation p.D284N 0.46 deleterious(0.02) benign(0.1) TCGA-NJ-A4YI-01 X 150913028 150913028 A G CNGA2 3'UTR 0.45 TCGA-NJ-A4YI-01 X 26213091 26213091 G - MAGEB6 Frame_Shift_Del p.A377Pfs*19 0.36 TCGA-NJ-A4YI-01 X 30237051 30237051 G T MAGEB2 Missense_Mutation p.L118F 0.44 deleterious(0.03) possibly_damaging(0.896) TCGA-NJ-A4YI-01 X 44970627 44970627 G C KDM6A Missense_Mutation p.A1393P 0.60 deleterious(0.01) possibly_damaging(0.701) TCGA-NJ-A4YI-01 X 54957783 54957783 G A TRO 3'UTR 0.54 TCGA-NJ-A4YI-01 X 5811349 5811349 G T NLGN4X Missense_Mutation p.H654N 0.54 tolerated(0.37) benign(0.009) TCGA-NJ-A4YI-01 X 5821611 5821611 C A NLGN4X Missense_Mutation p.G370C 0.59 deleterious(0) probably_damaging(1) TCGA-NJ-A4YI-01 X 91873895 91873895 C - PCDH11X Frame_Shift_Del p.P1334Rfs*29 0.40 TCGA-NJ-A4YI-01 Y 16952651 16952651 C A NLGN4Y Missense_Mutation p.H654N 0.84 tolerated(0.37) benign(0.004) TCGA-NJ-A4YP-01 10 101117351 101117351 G A CNNM1 Silent p.T552T 0.31 TCGA-NJ-A4YP-01 10 102300526 102300526 C A HIF1AN Silent p.L188L 0.21 TCGA-NJ-A4YP-01 10 105330799 105330799 C A NEURL1 Missense_Mutation p.Q86K 0.25 tolerated(0.38) probably_damaging(0.988) TCGA-NJ-A4YP-01 10 117884901 117884901 C G GFRA1 Missense_Mutation p.D201H 0.14 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YP-01 10 131959182 131959182 C G GLRX3 Silent p.L133L 0.16 TCGA-NJ-A4YP-01 10 134884458 134884458 G T GPR123 Missense_Mutation p.R9L 0.25 deleterious_low_confidence(0) benign(0.433) TCGA-NJ-A4YP-01 10 14950876 14950876 G A DCLRE1C Missense_Mutation p.S537F 0.15 deleterious_low_confidence(0.04) probably_damaging(0.985) TCGA-NJ-A4YP-01 10 16562717 16562717 G C C1QL3 Missense_Mutation p.I116M 0.24 tolerated(0.24) probably_damaging(0.958) TCGA-NJ-A4YP-01 10 17210880 17210880 C A TRDMT1 Missense_Mutation p.D71Y 0.24 deleterious(0) probably_damaging(0.982) TCGA-NJ-A4YP-01 10 18289726 18289726 C G SLC39A12 Missense_Mutation p.I577M 0.06 deleterious(0.01) probably_damaging(1) TCGA-NJ-A4YP-01 10 24910189 24910189 G T ARHGAP21 Nonsense_Mutation p.S212* 0.23 TCGA-NJ-A4YP-01 10 34671615 34671615 G A PARD3 Missense_Mutation p.H418Y 0.17 tolerated(1) benign(0) TCGA-NJ-A4YP-01 10 35333508 35333508 G A CUL2 Nonsense_Mutation p.Q253* 0.26 TCGA-NJ-A4YP-01 10 37430751 37430751 T A ANKRD30A Nonsense_Mutation p.L253* 0.31 TCGA-NJ-A4YP-01 10 44052848 44052848 C A ZNF239 Missense_Mutation p.R227I 0.21 deleterious(0.02) possibly_damaging(0.675) TCGA-NJ-A4YP-01 10 45652248 45652248 T A RP11-445N18.7 RNA 0.29 TCGA-NJ-A4YP-01 10 47087676 47087676 G A NPY4R Missense_Mutation p.C298Y 0.05 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YP-01 10 52619632 52619632 C G A1CF 5'UTR 0.16 TCGA-NJ-A4YP-01 10 64973838 64973838 C T JMJD1C Missense_Mutation p.E697K 0.18 tolerated(0.16) possibly_damaging(0.777) TCGA-NJ-A4YP-01 10 69749992 69749992 C G HERC4 Missense_Mutation p.E537Q 0.12 tolerated(0.17) benign(0.01) TCGA-NJ-A4YP-01 10 70706284 70706284 G C DDX50 Missense_Mutation p.Q704H 0.12 tolerated_low_confidence(0.34) unknown(0) TCGA-NJ-A4YP-01 10 71160864 71160864 G T HK1 Silent p.V913V 0.14 TCGA-NJ-A4YP-01 10 75557778 75557778 C G ZSWIM8 Missense_Mutation p.S1301C 0.07 deleterious(0) probably_damaging(0.996) TCGA-NJ-A4YP-01 10 7801920 7801920 C T KIN Missense_Mutation p.R351K 0.08 deleterious(0.04) benign(0.004) TCGA-NJ-A4YP-01 10 7848938 7848938 G A ATP5C1 Missense_Mutation p.D298N 0.14 tolerated(0.13) benign(0.002) TCGA-NJ-A4YP-01 10 7849715 7849715 G T ATP5C1 3'UTR 0.15 TCGA-NJ-A4YP-01 10 96039673 96039673 G C PLCE1 Intron 0.28 TCGA-NJ-A4YP-01 10 99196180 99196180 C T EXOSC1 3'UTR 0.12 TCGA-NJ-A4YP-01 11 104776315 104776315 C T RP11-693N9.2 Intron 0.15 TCGA-NJ-A4YP-01 11 104901911 104901911 C T CASP1 Nonsense_Mutation p.W145* 0.11 TCGA-NJ-A4YP-01 11 108155180 108155180 G C ATM Missense_Mutation p.E1325Q 0.12 deleterious(0.03) benign(0.146) TCGA-NJ-A4YP-01 11 110451175 110451175 G T ARHGAP20 Missense_Mutation p.T832K 0.20 tolerated(0.19) benign(0.143) TCGA-NJ-A4YP-01 11 113186965 113186965 G T TTC12 Intron 0.12 TCGA-NJ-A4YP-01 11 120838024 120838024 G C GRIK4 Missense_Mutation p.R796T 0.11 tolerated(0.13) probably_damaging(0.998) TCGA-NJ-A4YP-01 11 122774697 122774697 G C C11orf63 Missense_Mutation p.E137Q 0.18 deleterious(0.05) possibly_damaging(0.453) TCGA-NJ-A4YP-01 11 124735554 124735554 C A ROBO3 Missense_Mutation p.S27R 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-NJ-A4YP-01 11 1265843 1265843 C T MUC5B Missense_Mutation p.T2578I 0.21 unknown(0) TCGA-NJ-A4YP-01 11 1266957 1266957 G T MUC5B Missense_Mutation p.Q2949H 0.16 unknown(0) TCGA-NJ-A4YP-01 11 134128465 134128465 G C ACAD8 Missense_Mutation p.C146S 0.22 deleterious(0.04) possibly_damaging(0.568) TCGA-NJ-A4YP-01 11 13729507 13729507 G T FAR1 Missense_Mutation p.M142I 0.09 deleterious(0.03) benign(0.02) TCGA-NJ-A4YP-01 11 1605586 1605586 G A KRTAP5-1 3'UTR 0.13 TCGA-NJ-A4YP-01 11 20959343 20959343 T C NELL1 Missense_Mutation p.Y337H 0.26 tolerated(0.07) probably_damaging(0.929) TCGA-NJ-A4YP-01 11 22399117 22399117 A T SLC17A6 Missense_Mutation p.E527V 0.19 tolerated(0.07) possibly_damaging(0.623) TCGA-NJ-A4YP-01 11 24759829 24759829 C A LUZP2 Missense_Mutation p.A105E 0.13 deleterious(0) probably_damaging(0.997) TCGA-NJ-A4YP-01 11 251591 251591 G A PSMD13 Missense_Mutation p.E297K 0.10 deleterious(0.01) possibly_damaging(0.835) TCGA-NJ-A4YP-01 11 32635205 32635205 C G CCDC73 Missense_Mutation p.D887H 0.22 deleterious(0) probably_damaging(1) TCGA-NJ-A4YP-01 11 32705004 32705004 C A CCDC73 Intron 0.17 TCGA-NJ-A4YP-01 11 32858356 32858356 G A PRRG4 Missense_Mutation p.E86K 0.22 tolerated(0.82) possibly_damaging(0.674) TCGA-NJ-A4YP-01 11 33375024 33375024 C T HIPK3 Silent p.I1186I 0.20 TCGA-NJ-A4YP-01 11 3721925 3721925 G C NUP98 Silent p.L1219L 0.11 TCGA-NJ-A4YP-01 11 431871 431871 C G ANO9 Missense_Mutation p.E148Q 0.13 deleterious(0.02) possibly_damaging(0.871) TCGA-NJ-A4YP-01 11 43349359 43349359 G C API5 Missense_Mutation p.E292D 0.21 tolerated(0.08) possibly_damaging(0.819) TCGA-NJ-A4YP-01 11 44640247 44640247 G T CD82 Missense_Mutation p.V234L 0.13 deleterious(0.03) benign(0.398) TCGA-NJ-A4YP-01 11 47189740 47189740 G A ARFGAP2 Missense_Mutation p.A335V 0.25 tolerated(0.05) benign(0.004) TCGA-NJ-A4YP-01 11 47593084 47593084 A T PTPMT1 Missense_Mutation p.H170L 0.24 tolerated(1) benign(0.001) TCGA-NJ-A4YP-01 11 49831554 49831554 G T RP11-707M1.1 RNA 0.27 TCGA-NJ-A4YP-01 11 5275556 5275556 C A HBG2 Missense_Mutation p.C94F 0.15 tolerated(0.06) possibly_damaging(0.716) TCGA-NJ-A4YP-01 11 5536578 5536578 G T UBQLNL Missense_Mutation p.T365N 0.27 tolerated(0.08) benign(0.004) TCGA-NJ-A4YP-01 11 55541004 55541004 C G OR5D13 Missense_Mutation p.L31V 0.23 deleterious(0.04) benign(0.259) TCGA-NJ-A4YP-01 11 55587266 55587266 C A OR5D18 Missense_Mutation p.P54H 0.25 deleterious(0.01) possibly_damaging(0.671) TCGA-NJ-A4YP-01 11 56185378 56185378 C A OR5R1 Nonsense_Mutation p.E111* 0.15 TCGA-NJ-A4YP-01 11 56380629 56380629 G A OR5M1 Missense_Mutation p.S117L 0.08 tolerated(0.1) possibly_damaging(0.493) TCGA-NJ-A4YP-01 11 56431372 56431372 C A OR5AR1 Missense_Mutation p.L71M 0.05 deleterious(0.01) possibly_damaging(0.448) TCGA-NJ-A4YP-01 11 57440471 57440471 C G ZDHHC5 5'UTR 0.17 TCGA-NJ-A4YP-01 11 57971557 57971557 G C OR1S2 Missense_Mutation p.Q33E 0.13 tolerated(0.15) benign(0.003) TCGA-NJ-A4YP-01 11 58892342 58892342 G A FAM111B Missense_Mutation p.E258K 0.09 tolerated(0.1) benign(0.024) TCGA-NJ-A4YP-01 11 60070147 60070147 A G MS4A4A Missense_Mutation p.Y168C 0.20 tolerated(0.19) possibly_damaging(0.814) TCGA-NJ-A4YP-01 11 60184183 60184183 C A MS4A14 Missense_Mutation p.S614Y 0.20 tolerated(0.19) benign(0.028) TCGA-NJ-A4YP-01 11 61300491 61300491 G A SYT7 Silent p.L182L 0.16 TCGA-NJ-A4YP-01 11 62554895 62554895 C T TMEM179B 5'Flank 0.29 TCGA-NJ-A4YP-01 11 62620824 62620824 C T SLC3A2 5'Flank 0.07 TCGA-NJ-A4YP-01 11 64393953 64393953 C G NRXN2 Missense_Mutation p.E1277Q 0.24 deleterious(0.05) probably_damaging(0.919) TCGA-NJ-A4YP-01 11 64666299 64666299 C T ATG2A Missense_Mutation p.E1494K 0.08 deleterious(0) probably_damaging(0.995) TCGA-NJ-A4YP-01 11 65035009 65035009 G C POLA2 Missense_Mutation p.G89A 0.09 tolerated(0.24) possibly_damaging(0.843) TCGA-NJ-A4YP-01 11 65746353 65746353 C T SART1 Silent p.I784I 0.08 TCGA-NJ-A4YP-01 11 67766695 67766695 G A UNC93B1 Missense_Mutation p.S212F 0.20 deleterious(0.01) possibly_damaging(0.807) TCGA-NJ-A4YP-01 11 6816569 6816569 G T OR6A2 Missense_Mutation p.A124D 0.19 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YP-01 11 70049625 70049625 G A FADD Silent p.L20L 0.29 TCGA-NJ-A4YP-01 11 70052393 70052393 C G FADD Missense_Mutation p.I147M 0.24 tolerated(0.09) benign(0.087) TCGA-NJ-A4YP-01 11 70176314 70176314 C T PPFIA1 Silent p.I322I 0.20 TCGA-NJ-A4YP-01 11 82868655 82868655 C T PCF11 Silent p.I58I 0.17 TCGA-NJ-A4YP-01 11 88027416 88027416 T C CTSC Missense_Mutation p.K384E 0.24 tolerated(0.15) benign(0.037) TCGA-NJ-A4YP-01 11 92086269 92086269 C A FAT3 Missense_Mutation p.Q331K 0.10 benign(0.001) TCGA-NJ-A4YP-01 11 92568196 92568196 C A FAT3 Missense_Mutation p.D3344E 0.16 benign(0.006) TCGA-NJ-A4YP-01 11 93797562 93797562 C G HEPHL1 Missense_Mutation p.L232V 0.21 tolerated(1) benign(0.006) TCGA-NJ-A4YP-01 11 9431505 9431505 C T IPO7 Silent p.I117I 0.24 TCGA-NJ-A4YP-01 11 94730600 94730600 C T KDM4D Missense_Mutation p.H22Y 0.07 tolerated(0.35) benign(0.024) TCGA-NJ-A4YP-01 11 94731557 94731557 G C KDM4D Missense_Mutation p.D341H 0.09 deleterious(0) benign(0.106) TCGA-NJ-A4YP-01 11 95516337 95516337 G A FAM76B Missense_Mutation p.S152L 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-NJ-A4YP-01 11 9608065 9608065 G A WEE1 Missense_Mutation p.E514K 0.23 tolerated(0.09) possibly_damaging(0.845) TCGA-NJ-A4YP-01 12 101510536 101510536 G A ANO4 Missense_Mutation p.D809N 0.21 tolerated(0.99) benign(0.001) TCGA-NJ-A4YP-01 12 102040645 102040645 C T MYBPC1 Missense_Mutation p.S332F 0.06 tolerated(0.79) benign(0.222) TCGA-NJ-A4YP-01 12 105446691 105446691 C T ALDH1L2 Missense_Mutation p.E436K 0.19 tolerated(0.95) benign(0) TCGA-NJ-A4YP-01 12 108685647 108685647 T C CMKLR1 Missense_Mutation p.M365V 0.24 tolerated(1) benign(0) TCGA-NJ-A4YP-01 12 109679000 109679000 C T ACACB Missense_Mutation p.P1646S 0.24 deleterious(0.02) probably_damaging(0.996) TCGA-NJ-A4YP-01 12 109679001 109679001 C T ACACB Missense_Mutation p.P1646L 0.24 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YP-01 12 110029114 110029114 G A MVK Silent p.L279L 0.16 TCGA-NJ-A4YP-01 12 110034491 110034491 T A MVK 3'UTR 0.33 TCGA-NJ-A4YP-01 12 110034493 110034493 G A MVK 3'UTR 0.33 TCGA-NJ-A4YP-01 12 110385163 110385163 C T GIT2 Missense_Mutation p.M513I 0.19 tolerated(0.29) benign(0.033) TCGA-NJ-A4YP-01 12 111749980 111749980 G A CUX2 Silent p.K659K 0.26 TCGA-NJ-A4YP-01 12 111908388 111908388 G C ATXN2 Missense_Mutation p.Q1053E 0.17 possibly_damaging(0.759) TCGA-NJ-A4YP-01 12 112616995 112616995 C T HECTD4 Missense_Mutation p.E3586K 0.27 possibly_damaging(0.801) TCGA-NJ-A4YP-01 12 112616996 112616996 C T HECTD4 Silent p.L3585L 0.27 TCGA-NJ-A4YP-01 12 1192399 1192399 C T ERC1 Nonsense_Mutation p.Q247* 0.11 TCGA-NJ-A4YP-01 12 121613190 121613190 G C P2RX7 Splice_Site p.X294_splice 0.12 TCGA-NJ-A4YP-01 12 124882710 124882710 C T NCOR2 Missense_Mutation p.E611K 0.14 unknown(0) TCGA-NJ-A4YP-01 12 129442186 129442186 C T GLT1D1 Nonsense_Mutation p.Q213* 0.08 TCGA-NJ-A4YP-01 12 133502297 133502297 C A ZNF605 Nonsense_Mutation p.E561* 0.18 TCGA-NJ-A4YP-01 12 15370532 15370532 A T RERG 5'UTR 0.28 TCGA-NJ-A4YP-01 12 1967762 1967762 C T CACNA2D4 Silent p.G663G 0.21 TCGA-NJ-A4YP-01 12 2074748 2074748 G C DCP1B Missense_Mutation p.I166M 0.23 deleterious(0) benign(0.092) TCGA-NJ-A4YP-01 12 21926330 21926330 A G KCNJ8 Missense_Mutation p.V74A 0.18 deleterious(0.02) probably_damaging(0.983) TCGA-NJ-A4YP-01 12 25398262 25398262 C A KRAS Missense_Mutation p.L19F 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-NJ-A4YP-01 12 27081681 27081681 C A ASUN Missense_Mutation p.R153L 0.17 deleterious(0.03) benign(0.026) TCGA-NJ-A4YP-01 12 29631788 29631788 G T OVCH1 Nonsense_Mutation p.S350* 0.17 TCGA-NJ-A4YP-01 12 32908421 32908421 C T YARS2 Missense_Mutation p.E130K 0.27 tolerated(0.24) benign(0.025) TCGA-NJ-A4YP-01 12 33579171 33579171 G A SYT10 Silent p.S137S 0.13 TCGA-NJ-A4YP-01 12 4778906 4778906 G T NDUFA9 Splice_Site p.X242_splice 0.23 TCGA-NJ-A4YP-01 12 50794742 50794742 G T LARP4 5'UTR 0.14 TCGA-NJ-A4YP-01 12 50829272 50829272 G A LARP4 Missense_Mutation p.E134K 0.20 deleterious(0) possibly_damaging(0.889) TCGA-NJ-A4YP-01 12 50869400 50869400 C A LARP4 Missense_Mutation p.S643Y 0.10 deleterious(0.02) possibly_damaging(0.845) TCGA-NJ-A4YP-01 12 521094 521094 G A CCDC77 Missense_Mutation p.E74K 0.07 deleterious(0.01) possibly_damaging(0.797) TCGA-NJ-A4YP-01 12 52385768 52385768 G C ACVR1B Missense_Mutation p.Q502H 0.18 tolerated(0.56) probably_damaging(0.998) TCGA-NJ-A4YP-01 12 52776281 52776281 G A KRT84 Silent p.L284L 0.18 TCGA-NJ-A4YP-01 12 52863629 52863629 C A KRT6C Nonsense_Mutation p.E417* 0.14 TCGA-NJ-A4YP-01 12 54577482 54577482 G A SMUG1 Silent p.F81F 0.08 TCGA-NJ-A4YP-01 12 56863238 56863238 G A SPRYD4 Silent p.V167V 0.22 TCGA-NJ-A4YP-01 12 57490209 57490210 - A STAT6 3'UTR 0.22 TCGA-NJ-A4YP-01 12 6128883 6128883 C A VWF Missense_Mutation p.C1234F 0.29 deleterious(0) benign(0.139) TCGA-NJ-A4YP-01 12 67686403 67686403 C T CAND1 Missense_Mutation p.L72F 0.12 deleterious(0.02) probably_damaging(0.955) TCGA-NJ-A4YP-01 12 7023076 7023076 C G LRRC23 3'UTR 0.17 TCGA-NJ-A4YP-01 12 8759543 8759543 C A AICDA Missense_Mutation p.R25L 0.20 deleterious(0.01) benign(0.041) TCGA-NJ-A4YP-01 12 95566440 95566440 G A FGD6 Missense_Mutation p.S841F 0.23 deleterious(0.01) probably_damaging(0.957) TCGA-NJ-A4YP-01 12 99059401 99059401 C G APAF1 Silent p.L342L 0.15 TCGA-NJ-A4YP-01 12 99093239 99093239 C G APAF1 Missense_Mutation p.F786L 0.09 tolerated(0.26) benign(0.002) TCGA-NJ-A4YP-01 13 106119491 106119491 G T DAOA Splice_Site p.X45_splice 0.23 TCGA-NJ-A4YP-01 13 111340150 111340150 C A CARS2 Silent p.L163L 0.05 TCGA-NJ-A4YP-01 13 113798232 113798232 C A F10 Missense_Mutation p.S190R 0.09 tolerated(0.43) benign(0.003) TCGA-NJ-A4YP-01 13 23913868 23913868 G C SACS Missense_Mutation p.H1383D 0.26 benign(0.021) TCGA-NJ-A4YP-01 13 36006412 36006412 G C NBEA Missense_Mutation p.L2062F 0.20 tolerated(0.13) possibly_damaging(0.637) TCGA-NJ-A4YP-01 13 38211743 38211743 G A TRPC4 Missense_Mutation p.S749F 0.14 deleterious(0) probably_damaging(0.997) TCGA-NJ-A4YP-01 13 39264368 39264368 G A FREM2 Missense_Mutation p.E963K 0.05 deleterious(0.05) possibly_damaging(0.69) TCGA-NJ-A4YP-01 13 50586697 50586697 G C TRIM13 Missense_Mutation p.M210I 0.30 tolerated(0.1) benign(0.341) TCGA-NJ-A4YP-01 13 50587237 50587237 G C TRIM13 Missense_Mutation p.K390N 0.26 tolerated_low_confidence(0.07) benign(0.004) TCGA-NJ-A4YP-01 13 52439700 52439700 A G CCDC70 Missense_Mutation p.I62M 0.17 tolerated(0.29) probably_damaging(0.912) TCGA-NJ-A4YP-01 13 72256022 72256022 G A DACH1 Missense_Mutation p.P292L 0.23 probably_damaging(0.999) TCGA-NJ-A4YP-01 14 102898216 102898216 G A TECPR2 Missense_Mutation p.E390K 0.18 tolerated(0.12) benign(0.005) TCGA-NJ-A4YP-01 14 105931079 105931079 C T MTA1 Silent p.F471F 0.19 TCGA-NJ-A4YP-01 14 24705212 24705212 G C GMPR2 Missense_Mutation p.E129Q 0.19 tolerated(0.2) benign(0.005) TCGA-NJ-A4YP-01 14 51347246 51347246 G - ABHD12B Frame_Shift_Del p.N139Tfs*20 0.33 TCGA-NJ-A4YP-01 14 60072208 60072208 C G RTN1 Missense_Mutation p.E664Q 0.21 deleterious(0) probably_damaging(0.977) TCGA-NJ-A4YP-01 14 62536486 62536486 C T SYT16 Missense_Mutation p.S230L 0.09 tolerated(1) benign(0) TCGA-NJ-A4YP-01 14 69259682 69259682 G T ZFP36L1 5'UTR 0.17 TCGA-NJ-A4YP-01 14 73569914 73569914 G T RBM25 Missense_Mutation p.E294D 0.19 unknown(0) TCGA-NJ-A4YP-01 14 90770363 90770363 G A NRDE2 Silent p.L307L 0.20 TCGA-NJ-A4YP-01 14 94849308 94849308 G A SERPINA1 Silent p.S89S 0.07 TCGA-NJ-A4YP-01 14 96852067 96852067 G A GSKIP 3'UTR 0.22 TCGA-NJ-A4YP-01 15 22383470 22383470 C A OR4N4 3'UTR 0.62 TCGA-NJ-A4YP-01 15 23012297 23012297 G A NIPA2 Missense_Mutation p.H144Y 0.06 tolerated(0.61) benign(0.034) TCGA-NJ-A4YP-01 15 24922997 24922997 C A NPAP1 Silent p.L661L 0.13 TCGA-NJ-A4YP-01 15 25310227 25310227 G A SNORD116-6 RNA 0.05 TCGA-NJ-A4YP-01 15 25479316 25479316 G T SNORD115-33 3'Flank 0.19 TCGA-NJ-A4YP-01 15 33955104 33955104 C G RYR3 Silent p.V1791V 0.23 TCGA-NJ-A4YP-01 15 35085757 35085757 C A ACTC1 Missense_Mutation p.G48V 0.29 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-NJ-A4YP-01 15 40565064 40565064 C T PAK6 Intron 0.10 TCGA-NJ-A4YP-01 15 52476783 52476783 G C GNB5 Missense_Mutation p.Q31E 0.30 tolerated_low_confidence(0.87) benign(0) TCGA-NJ-A4YP-01 15 57730633 57730633 C T CGNL1 Nonsense_Mutation p.Q146* 0.13 TCGA-NJ-A4YP-01 15 72190168 72190168 G A MYO9A Missense_Mutation p.S1559F 0.10 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-NJ-A4YP-01 15 75108852 75108852 G T LMAN1L Missense_Mutation p.D139Y 0.23 deleterious(0) probably_damaging(1) TCGA-NJ-A4YP-01 15 77407481 77407481 C T PEAK1 Missense_Mutation p.E1420K 0.13 tolerated(0.26) benign(0.036) TCGA-NJ-A4YP-01 15 83832755 83832755 C T HDGFRP3 Missense_Mutation p.E53K 0.17 deleterious(0.01) probably_damaging(0.97) TCGA-NJ-A4YP-01 15 86260571 86260571 C T AKAP13 Missense_Mutation p.S1933L 0.17 deleterious(0) probably_damaging(0.995) TCGA-NJ-A4YP-01 15 89864473 89864473 C T POLG Missense_Mutation p.E873K 0.19 deleterious(0) probably_damaging(1) TCGA-NJ-A4YP-01 15 90144596 90144596 G A TICRR Missense_Mutation p.D741N 0.18 deleterious(0.02) possibly_damaging(0.726) TCGA-NJ-A4YP-01 15 90144605 90144605 G A TICRR Missense_Mutation p.E744K 0.17 deleterious(0) probably_damaging(0.925) TCGA-NJ-A4YP-01 15 91463053 91463053 G T MAN2A2 3'UTR 0.24 TCGA-NJ-A4YP-01 16 15850335 15850335 C A MYH11 Nonsense_Mutation p.E545* 0.32 TCGA-NJ-A4YP-01 16 1705288 1705288 A T CRAMP1L Missense_Mutation p.H369L 0.26 deleterious(0.02) possibly_damaging(0.457) TCGA-NJ-A4YP-01 16 19721887 19721887 C T KNOP1 Missense_Mutation p.E337K 0.22 deleterious(0.03) possibly_damaging(0.857) TCGA-NJ-A4YP-01 16 2018885 2018885 G A RNF151 Missense_Mutation p.E233K 0.25 deleterious_low_confidence(0.03) probably_damaging(0.956) TCGA-NJ-A4YP-01 16 2030672 2030672 G A NOXO1 Missense_Mutation p.L70F 0.44 deleterious(0.01) probably_damaging(0.994) TCGA-NJ-A4YP-01 16 20563501 20563501 G C ACSM2B Missense_Mutation p.L287V 0.15 tolerated(0.17) benign(0.081) TCGA-NJ-A4YP-01 16 22269092 22269092 G A EEF2K Splice_Site p.X343_splice 0.23 TCGA-NJ-A4YP-01 16 23711921 23711921 C A ERN2 Silent p.R536R 0.28 TCGA-NJ-A4YP-01 16 24808843 24808843 A C TNRC6A Missense_Mutation p.E1198D 0.21 tolerated(0.26) benign(0.01) TCGA-NJ-A4YP-01 16 28167757 28167757 G A XPO6 Silent p.I245I 0.24 TCGA-NJ-A4YP-01 16 2821499 2821499 G A TCEB2 Nonsense_Mutation p.Q154* 0.18 TCGA-NJ-A4YP-01 16 28508385 28508385 G C APOBR Missense_Mutation p.E675Q 0.19 tolerated(0.07) possibly_damaging(0.607) TCGA-NJ-A4YP-01 16 30747668 30747668 G T SRCAP Nonsense_Mutation p.E2293* 0.26 TCGA-NJ-A4YP-01 16 30778076 30778076 G T RNF40 Silent p.G436G 0.20 TCGA-NJ-A4YP-01 16 31926049 31926049 A G ZNF267 Missense_Mutation p.Y160C 0.33 tolerated(0.05) benign(0.001) TCGA-NJ-A4YP-01 16 32264925 32264925 C A TP53TG3D Missense_Mutation p.T84N 0.09 tolerated_low_confidence(0.19) possibly_damaging(0.607) TCGA-NJ-A4YP-01 16 4731653 4731653 G A MGRN1 Missense_Mutation p.E412K 0.22 deleterious(0.04) possibly_damaging(0.759) TCGA-NJ-A4YP-01 16 4731731 4731731 G T MGRN1 Missense_Mutation p.D438Y 0.25 deleterious(0) probably_damaging(0.914) TCGA-NJ-A4YP-01 16 48210974 48210974 C A ABCC11 Missense_Mutation p.Q1133H 0.14 tolerated(0.26) benign(0.001) TCGA-NJ-A4YP-01 16 4848120 4848120 G T ROGDI Silent p.L199L 0.20 TCGA-NJ-A4YP-01 16 624618 624618 G C PIGQ Missense_Mutation p.D182H 0.36 tolerated_low_confidence(0.06) benign(0.043) TCGA-NJ-A4YP-01 16 633692 633692 C T PIGQ 3'UTR 0.26 TCGA-NJ-A4YP-01 16 64984838 64984838 C T CDH11 Missense_Mutation p.D576N 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-NJ-A4YP-01 16 67702293 67702293 C T C16orf86 Silent p.L248L 0.34 TCGA-NJ-A4YP-01 16 70301626 70301626 G C AARS Silent p.L386L 0.42 TCGA-NJ-A4YP-01 16 70302228 70302228 G A AARS Silent p.L339L 0.35 TCGA-NJ-A4YP-01 16 71317674 71317674 G C CMTR2 Nonsense_Mutation p.S717* 0.25 TCGA-NJ-A4YP-01 16 7703920 7703920 G T RBFOX1 Silent p.A307A 0.17 TCGA-NJ-A4YP-01 16 7703937 7703937 C A RBFOX1 Missense_Mutation p.P313Q 0.36 deleterious(0.01) benign(0.037) TCGA-NJ-A4YP-01 16 77369759 77369759 G T ADAMTS18 Missense_Mutation p.P585T 0.32 deleterious(0) probably_damaging(0.984) TCGA-NJ-A4YP-01 16 7760750 7760750 G T RBFOX1 3'UTR 0.19 TCGA-NJ-A4YP-01 17 15961826 15961826 T A NCOR1 Missense_Mutation p.Q1990L 0.11 benign(0.05) TCGA-NJ-A4YP-01 17 18775902 18775902 G C PRPSAP2 Missense_Mutation p.R60T 0.19 tolerated(0.58) benign(0.009) TCGA-NJ-A4YP-01 17 20805922 20805922 C T RP11-344E13.3 RNA 0.17 TCGA-NJ-A4YP-01 17 25630601 25630601 C T WSB1 Nonsense_Mutation p.Q140* 0.22 TCGA-NJ-A4YP-01 17 26105806 26105806 C G NOS2 Missense_Mutation p.R397S 0.24 tolerated(0.27) benign(0.102) TCGA-NJ-A4YP-01 17 26988924 26988924 C T SDF2 5'UTR 0.09 TCGA-NJ-A4YP-01 17 28435124 28435124 C T EFCAB5 3'UTR 0.15 TCGA-NJ-A4YP-01 17 30821873 30821873 C T MYO1D Silent p.K975K 0.12 TCGA-NJ-A4YP-01 17 3101279 3101279 C A OR1A2 Missense_Mutation p.A156D 0.24 deleterious(0) possibly_damaging(0.809) TCGA-NJ-A4YP-01 17 3475520 3475520 C G SHPK Silent p.T709T 0.22 TCGA-NJ-A4YP-01 17 37107915 37107915 C G FBXO47 Missense_Mutation p.E179Q 0.20 deleterious(0.03) possibly_damaging(0.873) TCGA-NJ-A4YP-01 17 37369772 37369772 C G STAC2 Missense_Mutation p.E327D 0.26 tolerated(0.09) possibly_damaging(0.798) TCGA-NJ-A4YP-01 17 37866063 37866063 C T ERBB2 Intron 0.13 TCGA-NJ-A4YP-01 17 38032984 38032984 G A ZPBP2 Silent p.Q313Q 0.07 TCGA-NJ-A4YP-01 17 38127854 38127854 C T GSDMA Silent p.V212V 0.17 TCGA-NJ-A4YP-01 17 38640801 38640801 T A TNS4 Missense_Mutation p.Y479F 0.19 tolerated(0.08) benign(0.255) TCGA-NJ-A4YP-01 17 3978714 3978714 C T ZZEF1 Missense_Mutation p.E1082K 0.08 deleterious(0.02) possibly_damaging(0.682) TCGA-NJ-A4YP-01 17 4080482 4080482 G C ANKFY1 Missense_Mutation p.S947C 0.25 tolerated(0.13) possibly_damaging(0.754) TCGA-NJ-A4YP-01 17 41720925 41720925 G T MEOX1 Silent p.A191A 0.19 TCGA-NJ-A4YP-01 17 43182236 43182236 G C NMT1 Missense_Mutation p.D448H 0.19 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YP-01 17 44101405 44101405 G A MAPT Silent p.V733V 0.22 TCGA-NJ-A4YP-01 17 4692920 4692920 G A GLTPD2 Missense_Mutation p.E96K 0.07 tolerated(0.32) benign(0.103) TCGA-NJ-A4YP-01 17 48460271 48460271 G C LRRC59 3'UTR 0.29 TCGA-NJ-A4YP-01 17 4848207 4848207 C G RNF167 Missense_Mutation p.L317V 0.21 tolerated(0.59) benign(0.004) TCGA-NJ-A4YP-01 17 48755124 48755124 C T ABCC3 Missense_Mutation p.S1133L 0.19 deleterious(0.01) probably_damaging(1) TCGA-NJ-A4YP-01 17 5009292 5009292 C T ZNF232 Missense_Mutation p.E388K 0.22 tolerated(0.08) possibly_damaging(0.486) TCGA-NJ-A4YP-01 17 5009304 5009304 C G ZNF232 Missense_Mutation p.E384Q 0.14 deleterious(0) benign(0.284) TCGA-NJ-A4YP-01 17 56232727 56232727 C G OR4D1 Silent p.L71L 0.26 TCGA-NJ-A4YP-01 17 56358158 56358158 C G MPO 5'UTR 0.16 TCGA-NJ-A4YP-01 17 61564032 61564032 C T ACE Nonsense_Mutation p.Q725* 0.16 TCGA-NJ-A4YP-01 17 62045711 62045711 C T SCN4A Silent p.L236L 0.20 TCGA-NJ-A4YP-01 17 62758608 62758608 G A hsa-mir-6080 RNA 0.23 TCGA-NJ-A4YP-01 17 65907168 65907168 A T BPTF Missense_Mutation p.K1056N 0.16 probably_damaging(0.982) TCGA-NJ-A4YP-01 17 67023852 67023852 G A ABCA9 Missense_Mutation p.L574F 0.18 deleterious(0) probably_damaging(1) TCGA-NJ-A4YP-01 17 72915569 72915569 C A USH1G Silent p.P454P 0.23 TCGA-NJ-A4YP-01 17 7346526 7346526 T C FGF11 3'UTR 0.26 TCGA-NJ-A4YP-01 17 79914845 79914845 C A NOTUM Missense_Mutation p.W267C 0.19 deleterious(0) probably_damaging(1) TCGA-NJ-A4YP-01 18 13099553 13099553 C G CEP192 Missense_Mutation p.I2212M 0.17 deleterious(0.04) probably_damaging(0.984) TCGA-NJ-A4YP-01 18 21479329 21479329 G T LAMA3 Nonsense_Mutation p.E1972* 0.16 TCGA-NJ-A4YP-01 18 28651775 28651775 G A DSC2 Missense_Mutation p.P641S 0.10 tolerated(0.06) possibly_damaging(0.616) TCGA-NJ-A4YP-01 18 31324549 31324549 T C ASXL3 Silent p.F1579F 0.22 TCGA-NJ-A4YP-01 18 63477170 63477170 C G CDH7 Missense_Mutation p.N147K 0.21 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YP-01 18 6964673 6964673 G A LAMA1 Missense_Mutation p.S2442L 0.04 tolerated(0.29) possibly_damaging(0.718) TCGA-NJ-A4YP-01 18 8825233 8825233 C T SOGA2 Missense_Mutation p.S1242F 0.14 tolerated(0.67) benign(0.003) TCGA-NJ-A4YP-01 19 1061793 1061793 C T ABCA7 Silent p.L1826L 0.26 TCGA-NJ-A4YP-01 19 10812882 10812882 G A QTRT1 Missense_Mutation p.E135K 0.10 tolerated(0.49) benign(0.005) TCGA-NJ-A4YP-01 19 1219335 1219335 G T STK11 Missense_Mutation p.M129I 0.40 deleterious(0.01) benign(0.339) TCGA-NJ-A4YP-01 19 1220706 1220706 G T STK11 Missense_Mutation p.G242W 0.21 deleterious(0) probably_damaging(1) TCGA-NJ-A4YP-01 19 13033469 13033469 G A FARSA 3'UTR 0.29 TCGA-NJ-A4YP-01 19 13033470 13033470 A T FARSA 3'UTR 0.31 TCGA-NJ-A4YP-01 19 13051205 13051205 C T CALR Missense_Mutation p.S214L 0.23 deleterious(0) benign(0.344) TCGA-NJ-A4YP-01 19 15124540 15124540 G A CCDC105 Missense_Mutation p.M209I 0.33 tolerated(0.07) benign(0.301) TCGA-NJ-A4YP-01 19 17599678 17599678 C T SLC27A1 Silent p.F272F 0.26 TCGA-NJ-A4YP-01 19 22574651 22574651 G T ZNF98 Nonsense_Mutation p.Y462* 0.08 TCGA-NJ-A4YP-01 19 2444431 2444431 C T LMNB2 Silent p.L124L 0.41 TCGA-NJ-A4YP-01 19 33639745 33639745 C T WDR88 Missense_Mutation p.S203L 0.23 tolerated(0.1) benign(0.093) TCGA-NJ-A4YP-01 19 36348266 36348266 G T KIRREL2 Silent p.L27L 0.19 TCGA-NJ-A4YP-01 19 37975989 37975989 C T ZNF570 Nonsense_Mutation p.Q489* 0.10 TCGA-NJ-A4YP-01 19 38102542 38102542 G C ZNF540 Missense_Mutation p.E121Q 0.17 tolerated(0.12) benign(0.034) TCGA-NJ-A4YP-01 19 38973702 38973702 C A RYR1 Missense_Mutation p.F1552L 0.19 probably_damaging(0.999) TCGA-NJ-A4YP-01 19 38976345 38976345 C G RYR1 Missense_Mutation p.L1684V 0.24 benign(0.278) TCGA-NJ-A4YP-01 19 41223333 41223333 C T ITPKC Missense_Mutation p.A98V 0.24 deleterious_low_confidence(0) benign(0.039) TCGA-NJ-A4YP-01 19 44001363 44001363 C T PHLDB3 Silent p.E244E 0.22 TCGA-NJ-A4YP-01 19 4409421 4409421 G A CHAF1A Missense_Mutation p.E209K 0.19 tolerated_low_confidence(0.57) unknown(0) TCGA-NJ-A4YP-01 19 44423752 44423752 C T ZNF45 Missense_Mutation p.E39K 0.05 deleterious(0) probably_damaging(0.994) TCGA-NJ-A4YP-01 19 50881426 50881426 G T NR1H2 Nonsense_Mutation p.E68* 0.16 TCGA-NJ-A4YP-01 19 51527441 51527441 C T KLK11 Missense_Mutation p.R140H 0.28 tolerated(0.06) probably_damaging(1) TCGA-NJ-A4YP-01 19 51656418 51656418 C T SIGLEC7 Silent p.L440L 0.19 TCGA-NJ-A4YP-01 19 51869556 51869556 C A CLDND2 3'Flank 0.24 TCGA-NJ-A4YP-01 19 54251946 54251946 G C MIR521-1 RNA 0.18 TCGA-NJ-A4YP-01 19 54313536 54313536 T A NLRP12 Missense_Mutation p.R459S 0.21 deleterious(0.01) benign(0.293) TCGA-NJ-A4YP-01 19 54760128 54760128 C T LILRB5 Missense_Mutation p.D145N 0.33 tolerated(0.07) benign(0.415) TCGA-NJ-A4YP-01 19 55147170 55147170 C A LILRB1 Intron 0.19 TCGA-NJ-A4YP-01 19 55401057 55401057 T A FCAR Missense_Mutation p.M231K 0.20 deleterious(0) benign(0.118) TCGA-NJ-A4YP-01 19 55993031 55993031 C G ZNF628 Missense_Mutation p.F157L 0.20 deleterious(0) probably_damaging(0.966) TCGA-NJ-A4YP-01 19 56223264 56223264 C T NLRP9 Silent p.L915L 0.07 TCGA-NJ-A4YP-01 19 56369554 56369554 G A NLRP4 Silent p.L265L 0.09 TCGA-NJ-A4YP-01 19 57863063 57863063 C T ZNF304 Nonsense_Mutation p.Q11* 0.16 TCGA-NJ-A4YP-01 19 57953345 57953345 G A ZNF749 Silent p.V36V 0.12 TCGA-NJ-A4YP-01 19 58863930 58863930 G A A1BG Intron 0.23 TCGA-NJ-A4YP-01 19 621716 621716 C A POLRMT Missense_Mutation p.G661V 0.24 deleterious(0) probably_damaging(1) TCGA-NJ-A4YP-01 19 6495311 6495311 C - TUBB4A Frame_Shift_Del p.G400Afs*16 0.23 TCGA-NJ-A4YP-01 19 757003 757003 C T MISP Silent p.T19T 0.20 TCGA-NJ-A4YP-01 19 8661426 8661426 C A ADAMTS10 Missense_Mutation p.G362C 0.12 deleterious(0.01) probably_damaging(1) TCGA-NJ-A4YP-01 19 8976589 8976589 G T MUC16 Silent p.I14129I 0.20 TCGA-NJ-A4YP-01 19 9063871 9063871 C T MUC16 Missense_Mutation p.A7859T 0.20 unknown(0) TCGA-NJ-A4YP-01 1 101343406 101343406 C T EXTL2 Missense_Mutation p.R20Q 0.15 deleterious_low_confidence(0.03) benign(0.075) TCGA-NJ-A4YP-01 1 109526005 109526005 T G WDR47 Missense_Mutation p.Y673S 0.20 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YP-01 1 11015223 11015223 C T C1orf127 Missense_Mutation p.E267K 0.22 tolerated(0.1) probably_damaging(0.953) TCGA-NJ-A4YP-01 1 114380719 114380719 C A PTPN22 Nonsense_Mutation p.G435* 0.22 TCGA-NJ-A4YP-01 1 11850725 11850725 C T MTHFR 3'UTR 0.28 TCGA-NJ-A4YP-01 1 11851273 11851273 C T MTHFR Missense_Mutation p.M581I 0.21 tolerated(0.3) benign(0.004) TCGA-NJ-A4YP-01 1 12884679 12884679 C T PRAMEF11 3'UTR 0.19 TCGA-NJ-A4YP-01 1 144912139 144912139 C T PDE4DIP Silent p.Q712Q 0.07 TCGA-NJ-A4YP-01 1 150737202 150737202 G A CTSS Missense_Mutation p.S13F 0.18 tolerated(0.72) benign(0.189) TCGA-NJ-A4YP-01 1 152127432 152127432 C A RPTN Missense_Mutation p.D715Y 0.14 deleterious(0) possibly_damaging(0.847) TCGA-NJ-A4YP-01 1 152187603 152187603 G A HRNR Nonsense_Mutation p.Q2168* 0.03 TCGA-NJ-A4YP-01 1 152671606 152671606 T G LCE2A Missense_Mutation p.F77V 0.08 tolerated_low_confidence(0.42) unknown(0) TCGA-NJ-A4YP-01 1 153721200 153721200 G A INTS3 Missense_Mutation p.E185K 0.22 deleterious(0) probably_damaging(0.994) TCGA-NJ-A4YP-01 1 155260453 155260453 G A PKLR Silent p.F545F 0.09 TCGA-NJ-A4YP-01 1 156040024 156040024 G T RAB25 Missense_Mutation p.Q196H 0.18 tolerated_low_confidence(0.13) benign(0.002) TCGA-NJ-A4YP-01 1 156640912 156640912 C T NES Missense_Mutation p.R1023K 0.05 tolerated(0.09) benign(0.03) TCGA-NJ-A4YP-01 1 156640980 156640980 C T NES Silent p.L1000L 0.05 TCGA-NJ-A4YP-01 1 156721201 156721201 C T HDGF Intron 0.13 TCGA-NJ-A4YP-01 1 158627389 158627389 G T SPTA1 Missense_Mutation p.L895I 0.14 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YP-01 1 158644178 158644178 C T SPTA1 Missense_Mutation p.E431K 0.13 tolerated(0.06) possibly_damaging(0.676) TCGA-NJ-A4YP-01 1 158746766 158746766 C T OR6N2 Silent p.R220R 0.17 TCGA-NJ-A4YP-01 1 158906918 158906918 C A PYHIN1 Missense_Mutation p.P73Q 0.12 deleterious(0.05) possibly_damaging(0.811) TCGA-NJ-A4YP-01 1 159023471 159023471 G A IFI16 Missense_Mutation p.G689E 0.13 tolerated(1) benign(0.051) TCGA-NJ-A4YP-01 1 160326973 160326973 C G NCSTN Missense_Mutation p.S646C 0.14 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YP-01 1 160390289 160390289 G T VANGL2 Missense_Mutation p.V297F 0.59 tolerated(0.38) possibly_damaging(0.758) TCGA-NJ-A4YP-01 1 161200682 161200682 C T NR1I3 Missense_Mutation p.E289K 0.10 tolerated(0.86) benign(0.008) TCGA-NJ-A4YP-01 1 161596006 161596006 G C FCGR3B Missense_Mutation p.S205C 0.13 deleterious(0.01) probably_damaging(0.989) TCGA-NJ-A4YP-01 1 16736388 16736388 G A SPATA21 Missense_Mutation p.H99Y 0.33 tolerated(0.06) possibly_damaging(0.791) TCGA-NJ-A4YP-01 1 171250035 171250035 C T FMO1 Silent p.S246S 0.18 TCGA-NJ-A4YP-01 1 171549011 171549011 G A PRRC2C Silent p.L2437L 0.15 TCGA-NJ-A4YP-01 1 171605676 171605676 C T MYOC Missense_Mutation p.D302N 0.09 tolerated(0.08) benign(0.013) TCGA-NJ-A4YP-01 1 173454505 173454505 C G PRDX6 Missense_Mutation p.I86M 0.12 deleterious(0) probably_damaging(0.963) TCGA-NJ-A4YP-01 1 179316742 179316742 G A SOAT1 Silent p.L375L 0.20 TCGA-NJ-A4YP-01 1 179959751 179959751 G C CEP350 Missense_Mutation p.R77T 0.24 possibly_damaging(0.843) TCGA-NJ-A4YP-01 1 180804096 180804096 G T XPR1 Silent p.L407L 0.18 TCGA-NJ-A4YP-01 1 182025411 182025411 C G ZNF648 3'UTR 0.17 TCGA-NJ-A4YP-01 1 182993002 182993002 A T LAMC1 Missense_Mutation p.M51L 0.10 tolerated(0.25) probably_damaging(0.945) TCGA-NJ-A4YP-01 1 183201894 183201894 C G LAMC2 Missense_Mutation p.L708V 0.14 deleterious(0.02) probably_damaging(0.979) TCGA-NJ-A4YP-01 1 183617477 183617477 C A APOBEC4 Missense_Mutation p.G147V 0.14 deleterious(0.01) benign(0.084) TCGA-NJ-A4YP-01 1 184446573 184446573 G C C1orf21 5'UTR 0.17 TCGA-NJ-A4YP-01 1 185703998 185703998 G C HMCN1 Missense_Mutation p.E29D 0.12 benign(0) TCGA-NJ-A4YP-01 1 185988694 185988694 C T HMCN1 Missense_Mutation p.S1831L 0.11 probably_damaging(0.992) TCGA-NJ-A4YP-01 1 192778220 192778220 T - RGS2 Frame_Shift_Del p.L7Wfs*27 0.14 TCGA-NJ-A4YP-01 1 193218895 193218895 C T CDC73 Silent p.L485L 0.11 TCGA-NJ-A4YP-01 1 19513101 19513101 G A UBR4 Silent p.S561S 0.21 TCGA-NJ-A4YP-01 1 197024868 197024868 C A F13B Missense_Mutation p.W444L 0.13 deleterious(0.04) probably_damaging(1) TCGA-NJ-A4YP-01 1 200587553 200587553 G A KIF14 Missense_Mutation p.S100L 0.19 tolerated(0.05) benign(0.013) TCGA-NJ-A4YP-01 1 200635800 200635800 C G DDX59 Missense_Mutation p.K23N 0.04 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-NJ-A4YP-01 1 204006311 204006311 T A LINC00303 Intron 0.76 TCGA-NJ-A4YP-01 1 204946006 204946006 G A NFASC Intron 0.15 TCGA-NJ-A4YP-01 1 20517387 20517387 C G UBXN10 Silent p.L111L 0.21 TCGA-NJ-A4YP-01 1 2105377 2105377 G C PRKCZ Missense_Mutation p.E443Q 0.08 deleterious(0.01) probably_damaging(0.978) TCGA-NJ-A4YP-01 1 210970944 210970944 G C KCNH1 Silent p.L607L 0.11 TCGA-NJ-A4YP-01 1 215813914 215813914 C G USH2A Missense_Mutation p.R4985T 0.10 possibly_damaging(0.873) TCGA-NJ-A4YP-01 1 216138672 216138672 G C USH2A Missense_Mutation p.F2369L 0.05 benign(0.188) TCGA-NJ-A4YP-01 1 220928439 220928439 C G MARC2 Silent p.S141S 0.14 TCGA-NJ-A4YP-01 1 227174301 227174301 C G ADCK3 Missense_Mutation p.P603A 0.06 deleterious(0) probably_damaging(0.984) TCGA-NJ-A4YP-01 1 234742849 234742849 G A IRF2BP2 3'UTR 0.29 TCGA-NJ-A4YP-01 1 23520424 23520424 C - HTR1D Frame_Shift_Del p.A97Pfs*62 0.16 TCGA-NJ-A4YP-01 1 235346019 235346019 C T ARID4B Missense_Mutation p.D739N 0.11 tolerated_low_confidence(0.11) benign(0.094) TCGA-NJ-A4YP-01 1 237806679 237806679 C T RYR2 Missense_Mutation p.S2425F 0.20 probably_damaging(0.999) TCGA-NJ-A4YP-01 1 237947556 237947556 G C RYR2 Missense_Mutation p.E4182Q 0.12 probably_damaging(0.999) TCGA-NJ-A4YP-01 1 23847476 23847476 C A E2F2 Missense_Mutation p.Q222H 0.17 deleterious(0.03) possibly_damaging(0.862) TCGA-NJ-A4YP-01 1 247039463 247039463 C G AHCTF1 Missense_Mutation p.E997D 0.13 deleterious(0.01) probably_damaging(0.971) TCGA-NJ-A4YP-01 1 247588854 247588854 G T NLRP3 Missense_Mutation p.M703I 0.14 tolerated(0.2) benign(0.002) TCGA-NJ-A4YP-01 1 247875598 247875598 C A OR6F1 Missense_Mutation p.V154L 0.44 tolerated(1) benign(0.001) TCGA-NJ-A4YP-01 1 248004562 248004563 - A OR11L1 Frame_Shift_Ins p.L213Sfs*57 0.15 TCGA-NJ-A4YP-01 1 25551510 25551510 G A SYF2 Silent p.V183V 0.17 TCGA-NJ-A4YP-01 1 28290149 28290149 G C XKR8 Missense_Mutation p.Q145H 0.24 deleterious(0.01) probably_damaging(0.992) TCGA-NJ-A4YP-01 1 32740623 32740623 G T LCK Nonsense_Mutation p.E73* 0.19 TCGA-NJ-A4YP-01 1 37282732 37282732 C T GRIK3 Missense_Mutation p.D674N 0.19 deleterious(0) probably_damaging(1) TCGA-NJ-A4YP-01 1 46295119 46295119 C A MAST2 Missense_Mutation p.L112M 0.13 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-NJ-A4YP-01 1 47040664 47040664 C T MKNK1 Missense_Mutation p.E115K 0.28 deleterious(0) possibly_damaging(0.745) TCGA-NJ-A4YP-01 1 6185633 6185633 C G CHD5 Missense_Mutation p.R1404T 0.18 deleterious(0.03) benign(0.065) TCGA-NJ-A4YP-01 1 63069891 63069891 C T ANGPTL3 Missense_Mutation p.P395S 0.23 tolerated(0.25) benign(0.021) TCGA-NJ-A4YP-01 1 65243706 65243706 C T RAVER2 Silent p.P239P 0.11 TCGA-NJ-A4YP-01 1 68512815 68512815 T A DIRAS3 Nonsense_Mutation p.K56* 0.27 TCGA-NJ-A4YP-01 1 71532463 71532463 C T ZRANB2 Missense_Mutation p.E309K 0.07 deleterious_low_confidence(0.04) unknown(0) TCGA-NJ-A4YP-01 1 74819794 74819794 G C FPGT-TNNI3K Missense_Mutation p.L500F 0.16 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YP-01 1 75065496 75065496 T G C1orf173 Missense_Mutation p.N537H 0.21 tolerated(0.3) benign(0.033) TCGA-NJ-A4YP-01 1 77334339 77334339 C T ST6GALNAC5 Missense_Mutation p.P58L 0.47 benign(0.119) TCGA-NJ-A4YP-01 1 87033222 87033222 A G CLCA4 Missense_Mutation p.N357S 0.21 tolerated(1) benign(0.004) TCGA-NJ-A4YP-01 1 89849809 89849809 G C GBP6 Silent p.L542L 0.19 TCGA-NJ-A4YP-01 1 91406639 91406639 T A ZNF644 Missense_Mutation p.Q91L 0.19 deleterious(0) benign(0.184) TCGA-NJ-A4YP-01 1 934952 934952 C T HES4 Silent p.E108E 0.25 TCGA-NJ-A4YP-01 1 99771716 99771716 C A LPPR4 Nonsense_Mutation p.S481* 0.20 TCGA-NJ-A4YP-01 20 1600576 1600576 G A SIRPB1 Silent p.A5A 0.08 TCGA-NJ-A4YP-01 20 16486496 16486496 C G KIF16B Missense_Mutation p.D291H 0.29 deleterious(0) probably_damaging(1) TCGA-NJ-A4YP-01 20 1902216 1902216 C G SIRPA Missense_Mutation p.S204R 0.22 tolerated(0.05) possibly_damaging(0.727) TCGA-NJ-A4YP-01 20 30672297 30672297 C T HCK Silent p.L262L 0.06 TCGA-NJ-A4YP-01 20 32341159 32341159 C T ZNF341 Missense_Mutation p.A224V 0.13 tolerated(0.58) benign(0.046) TCGA-NJ-A4YP-01 20 34572668 34572668 G A CNBD2 Silent p.Q228Q 0.23 TCGA-NJ-A4YP-01 20 3684093 3684093 C T SIGLEC1 Missense_Mutation p.E327K 0.19 tolerated(0.37) benign(0.033) TCGA-NJ-A4YP-01 20 3684575 3684575 C A SIGLEC1 Silent p.L290L 0.09 TCGA-NJ-A4YP-01 20 37384544 37384544 G A ACTR5 Silent p.L346L 0.27 TCGA-NJ-A4YP-01 20 3766566 3766566 G A CENPB Nonsense_Mutation p.Q189* 0.19 TCGA-NJ-A4YP-01 20 3766766 3766766 C A CENPB Missense_Mutation p.W122L 0.10 deleterious(0) unknown(0) TCGA-NJ-A4YP-01 20 4163347 4163347 G A SMOX Silent p.K407K 0.29 TCGA-NJ-A4YP-01 20 43559304 43559304 G A PABPC1L Silent p.L392L 0.07 TCGA-NJ-A4YP-01 20 46313262 46313262 G T SULF2 Silent p.P267P 0.20 TCGA-NJ-A4YP-01 20 48098843 48098843 T A KCNB1 Nonsense_Mutation p.K59* 0.26 TCGA-NJ-A4YP-01 20 54824447 54824447 C T MC3R Missense_Mutation p.S183L 0.28 tolerated(0.58) probably_damaging(0.999) TCGA-NJ-A4YP-01 20 56090727 56090727 G T CTCFL Intron 0.17 TCGA-NJ-A4YP-01 20 5948643 5948643 G T MCM8 Nonsense_Mutation p.E399* 0.29 TCGA-NJ-A4YP-01 20 62153120 62153120 C G PPDPF Missense_Mutation p.S78W 0.12 deleterious(0.02) benign(0.04) TCGA-NJ-A4YP-01 20 9404407 9404407 G C PLCB4 Missense_Mutation p.D766H 0.10 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YP-01 21 10942755 10942755 C T TPTE Missense_Mutation p.R229Q 0.10 deleterious(0.04) probably_damaging(0.982) TCGA-NJ-A4YP-01 21 22881290 22881290 G A NCAM2 Silent p.L732L 0.26 TCGA-NJ-A4YP-01 21 22906869 22906869 C A NCAM2 Nonsense_Mutation p.S765* 0.17 TCGA-NJ-A4YP-01 21 27945306 27945306 G A CYYR1 5'UTR 0.17 TCGA-NJ-A4YP-01 21 30378926 30378926 C T RWDD2B Missense_Mutation p.D258N 0.09 deleterious(0.01) probably_damaging(0.944) TCGA-NJ-A4YP-01 21 31913904 31913904 G A KRTAP19-6 3'UTR 0.23 TCGA-NJ-A4YP-01 21 32595897 32595897 C A TIAM1 Missense_Mutation p.W607L 0.22 deleterious(0) benign(0.122) TCGA-NJ-A4YP-01 21 39947589 39947589 G C ERG Missense_Mutation p.I12M 0.14 deleterious(0.03) benign(0.128) TCGA-NJ-A4YP-01 21 44441416 44441416 C T PKNOX1 Nonsense_Mutation p.Q242* 0.08 TCGA-NJ-A4YP-01 21 44836666 44836666 C T SIK1 Missense_Mutation p.D770N 0.22 deleterious_low_confidence(0.01) benign(0.398) TCGA-NJ-A4YP-01 22 16449707 16449707 G T OR11H1 Missense_Mutation p.S33Y 0.12 deleterious(0) possibly_damaging(0.519) TCGA-NJ-A4YP-01 22 17978481 17978481 G A CECR2 Missense_Mutation p.E108K 0.27 tolerated(0.06) possibly_damaging(0.641) TCGA-NJ-A4YP-01 22 22673515 22673515 C G IGLV5-52 Missense_Mutation p.S103C 0.16 deleterious(0) probably_damaging(0.985) TCGA-NJ-A4YP-01 22 29834839 29834839 C T RFPL1 Missense_Mutation p.P20L 0.22 tolerated_low_confidence(0.31) benign(0.025) TCGA-NJ-A4YP-01 22 30050647 30050647 A G NF2 Missense_Mutation p.Y150C 0.22 deleterious(0.04) probably_damaging(0.997) TCGA-NJ-A4YP-01 22 32352124 32352124 A C YWHAH Splice_Site p.X30_splice 0.18 TCGA-NJ-A4YP-01 22 35689737 35689737 G A HMGXB4 3'UTR 0.19 TCGA-NJ-A4YP-01 22 38121046 38121046 C G TRIOBP Missense_Mutation p.S828C 0.05 tolerated_low_confidence(0.11) benign(0.017) TCGA-NJ-A4YP-01 22 42557230 42557230 G C TCF20 3'UTR 0.29 TCGA-NJ-A4YP-01 22 44333103 44333103 G T PNPLA3 Silent p.L310L 0.23 TCGA-NJ-A4YP-01 22 46860001 46860001 G A CELSR1 Silent p.F1262F 0.22 TCGA-NJ-A4YP-01 22 50278846 50278846 G A ZBED4 Silent p.Q512Q 0.18 TCGA-NJ-A4YP-01 22 50279146 50279146 G A ZBED4 Silent p.L612L 0.28 TCGA-NJ-A4YP-01 22 50905860 50905860 G A SBF1 Silent p.I152I 0.06 TCGA-NJ-A4YP-01 22 51137192 51137192 G T SHANK3 Missense_Mutation p.V541L 0.10 benign(0.083) TCGA-NJ-A4YP-01 2 108479211 108479211 G A RGPD4 Missense_Mutation p.G760E 0.15 tolerated(0.25) probably_damaging(0.972) TCGA-NJ-A4YP-01 2 112592273 112592273 G T ANAPC1 Missense_Mutation p.F764L 0.13 tolerated(0.12) benign(0.023) TCGA-NJ-A4YP-01 2 113676327 113676327 G T IL37 Nonsense_Mutation p.E200* 0.18 TCGA-NJ-A4YP-01 2 120438503 120438503 C A TMEM177 Missense_Mutation p.A25E 0.10 deleterious(0.02) possibly_damaging(0.451) TCGA-NJ-A4YP-01 2 128393857 128393857 C T MYO7B Silent p.I2001I 0.08 TCGA-NJ-A4YP-01 2 130831816 130831816 C A POTEF 3'UTR 0.31 TCGA-NJ-A4YP-01 2 130831817 130831817 C A POTEF Nonstop_Mutation p.*1076Yext*73 0.31 TCGA-NJ-A4YP-01 2 152108144 152108144 G A RBM43 Missense_Mutation p.S117F 0.14 deleterious(0) probably_damaging(1) TCGA-NJ-A4YP-01 2 152320185 152320185 C A RIF1 Missense_Mutation p.S1384Y 0.19 deleterious(0.05) probably_damaging(0.95) TCGA-NJ-A4YP-01 2 157186105 157186105 C - NR4A2 Frame_Shift_Del p.H199Tfs*4 0.15 TCGA-NJ-A4YP-01 2 158114939 158114939 G A GALNT5 Silent p.Q115Q 0.06 TCGA-NJ-A4YP-01 2 160742944 160742944 G A LY75-CD302 Silent p.L300L 0.12 TCGA-NJ-A4YP-01 2 166854585 166854585 C A SCN1A Missense_Mutation p.G1480V 0.08 deleterious(0) probably_damaging(0.994) TCGA-NJ-A4YP-01 2 179477781 179477781 C T TTN Missense_Mutation p.G16556E 0.33 TCGA-NJ-A4YP-01 2 179532244 179532244 G T TTN Missense_Mutation p.P11880T 0.16 TCGA-NJ-A4YP-01 2 179600423 179600423 A G TTN Missense_Mutation p.V4917A 0.20 TCGA-NJ-A4YP-01 2 189864209 189864209 C T COL3A1 Missense_Mutation p.P712L 0.26 unknown(0) TCGA-NJ-A4YP-01 2 202050731 202050731 C A CASP10 Missense_Mutation p.F77L 0.11 deleterious(0) probably_damaging(0.931) TCGA-NJ-A4YP-01 2 202672348 202672348 G A CDK15 Silent p.L85L 0.10 TCGA-NJ-A4YP-01 2 207027515 207027515 G A EEF1B2 Missense_Mutation p.D196N 0.05 deleterious(0) benign(0.314) TCGA-NJ-A4YP-01 2 216226219 216226219 C G FN1 3'UTR 0.16 TCGA-NJ-A4YP-01 2 223488993 223488993 G A FARSB Nonsense_Mutation p.Q390* 0.15 TCGA-NJ-A4YP-01 2 225422486 225422486 G C CUL3 Missense_Mutation p.L52V 0.15 deleterious(0) possibly_damaging(0.823) TCGA-NJ-A4YP-01 2 228881246 228881246 C T SPHKAP Missense_Mutation p.E1442K 0.09 tolerated(0.1) benign(0.032) TCGA-NJ-A4YP-01 2 231036809 231036809 C T SP110 Silent p.E596E 0.10 TCGA-NJ-A4YP-01 2 231150529 231150529 G C SP140 Missense_Mutation p.D543H 0.16 tolerated(0.06) possibly_damaging(0.615) TCGA-NJ-A4YP-01 2 231328805 231328805 G A SP100 Missense_Mutation p.E361K 0.33 deleterious(0.04) benign(0.096) TCGA-NJ-A4YP-01 2 232645927 232645927 C T PDE6D 5'UTR 0.33 TCGA-NJ-A4YP-01 2 233127 233127 C T SH3YL1 Silent p.L169L 0.14 TCGA-NJ-A4YP-01 2 234858761 234858761 G A TRPM8 Missense_Mutation p.E371K 0.16 deleterious(0) probably_damaging(0.99) TCGA-NJ-A4YP-01 2 242610823 242610823 G A ATG4B Intron 0.15 TCGA-NJ-A4YP-01 2 25966945 25966945 G C ASXL2 Missense_Mutation p.S754C 0.18 tolerated_low_confidence(0.1) possibly_damaging(0.76) TCGA-NJ-A4YP-01 2 29006799 29006799 G A PPP1CB Missense_Mutation p.E183K 0.07 deleterious_low_confidence(0.03) benign(0.167) TCGA-NJ-A4YP-01 2 32832633 32832633 G A BIRC6 Missense_Mutation p.D4728N 0.16 possibly_damaging(0.648) TCGA-NJ-A4YP-01 2 33526632 33526632 G T LTBP1 Missense_Mutation p.Q1134H 0.10 tolerated(0.16) benign(0.006) TCGA-NJ-A4YP-01 2 36810584 36810584 G A FEZ2 Missense_Mutation p.S135L 0.15 deleterious(0.01) possibly_damaging(0.598) TCGA-NJ-A4YP-01 2 37035918 37035918 G A VIT Missense_Mutation p.D565N 0.15 tolerated(0.29) benign(0.103) TCGA-NJ-A4YP-01 2 39487861 39487861 C T MAP4K3 Missense_Mutation p.E732K 0.08 tolerated(0.08) probably_damaging(0.998) TCGA-NJ-A4YP-01 2 77745843 77745843 G A LRRTM4 Silent p.I384I 0.14 TCGA-NJ-A4YP-01 2 87017610 87017610 C T CD8A Missense_Mutation p.E82K 0.13 tolerated(0.16) benign(0.402) TCGA-NJ-A4YP-01 2 99938356 99938356 C G TXNDC9 Intron 0.19 TCGA-NJ-A4YP-01 3 101284217 101284217 G C TRMT10C Missense_Mutation p.A198P 0.20 deleterious(0) probably_damaging(0.996) TCGA-NJ-A4YP-01 3 10145979 10145979 G A FANCD2OS Silent p.L160L 0.12 TCGA-NJ-A4YP-01 3 107097305 107097305 C T CCDC54 Nonsense_Mutation p.Q291* 0.21 TCGA-NJ-A4YP-01 3 108476012 108476012 G T RETNLB Silent p.L7L 0.27 TCGA-NJ-A4YP-01 3 115395012 115395012 T A GAP43 Silent p.A97A 0.21 TCGA-NJ-A4YP-01 3 119134970 119134970 C T ARHGAP31 Silent p.V1398V 0.06 TCGA-NJ-A4YP-01 3 119217754 119217754 C T TIMMDC1 Silent p.L58L 0.18 TCGA-NJ-A4YP-01 3 119812362 119812362 G A GSK3B 5'UTR 0.17 TCGA-NJ-A4YP-01 3 119892253 119892253 C A GPR156 Missense_Mutation p.S333I 0.20 deleterious(0) probably_damaging(0.941) TCGA-NJ-A4YP-01 3 129304863 129304863 C T PLXND1 Missense_Mutation p.E595K 0.22 tolerated(0.07) benign(0.022) TCGA-NJ-A4YP-01 3 142188994 142188994 G A ATR Nonsense_Mutation p.Q2085* 0.21 TCGA-NJ-A4YP-01 3 143704687 143704687 A T C3orf58 Missense_Mutation p.Q320H 0.22 deleterious(0.04) possibly_damaging(0.769) TCGA-NJ-A4YP-01 3 150377805 150377805 C A FAM194A Missense_Mutation p.W622C 0.18 deleterious(0) probably_damaging(0.975) TCGA-NJ-A4YP-01 3 150659411 150659411 G T CLRN1 Missense_Mutation p.L131M 0.16 tolerated(0.06) probably_damaging(0.944) TCGA-NJ-A4YP-01 3 154859918 154859918 T A MME Splice_Site p.X365_splice 0.16 TCGA-NJ-A4YP-01 3 179754389 179754389 C T PEX5L 5'UTR 0.12 TCGA-NJ-A4YP-01 3 180630498 180630498 C T FXR1 Missense_Mutation p.R9C 0.15 tolerated(0.15) possibly_damaging(0.651) TCGA-NJ-A4YP-01 3 182597428 182597428 G A ATP11B Silent p.Q799Q 0.07 TCGA-NJ-A4YP-01 3 183446516 183446516 C G YEATS2 Nonsense_Mutation p.S230* 0.07 TCGA-NJ-A4YP-01 3 185993333 185993333 C G DGKG Intron 0.13 TCGA-NJ-A4YP-01 3 191888366 191888366 C T FGF12 Missense_Mutation p.R165H 0.05 deleterious(0.01) possibly_damaging(0.72) TCGA-NJ-A4YP-01 3 195492285 195492285 C T MUC4 Missense_Mutation p.E4552K 0.14 benign(0.286) TCGA-NJ-A4YP-01 3 195984696 195984696 G A PCYT1A Silent p.V60V 0.17 TCGA-NJ-A4YP-01 3 38936185 38936185 C G SCN11A Missense_Mutation p.E892Q 0.17 tolerated(0.25) benign(0.044) TCGA-NJ-A4YP-01 3 39231006 39231006 G C XIRP1 5'UTR 0.22 TCGA-NJ-A4YP-01 3 44776456 44776456 G C ZNF501 Missense_Mutation p.Q181H 0.18 deleterious_low_confidence(0.03) benign(0.162) TCGA-NJ-A4YP-01 3 47539857 47539857 C T ELP6 Silent p.L197L 0.33 TCGA-NJ-A4YP-01 3 49450518 49450518 G T TCTA Missense_Mutation p.D82Y 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-NJ-A4YP-01 3 50677799 50677799 C T MAPKAPK3 Silent p.L74L 0.23 TCGA-NJ-A4YP-01 3 52489697 52489697 G A NISCH Missense_Mutation p.E14K 0.32 deleterious(0.05) probably_damaging(0.995) TCGA-NJ-A4YP-01 3 52543237 52543237 G C STAB1 Silent p.G749G 0.13 TCGA-NJ-A4YP-01 3 52847505 52847505 C G ITIH4 Missense_Mutation p.E909Q 0.20 tolerated(0.58) benign(0.292) TCGA-NJ-A4YP-01 3 73004335 73004335 G A GXYLT2 Silent p.L229L 0.10 TCGA-NJ-A4YP-01 3 9594088 9594088 G C LHFPL4 Missense_Mutation p.F92L 0.22 deleterious(0.01) probably_damaging(0.968) TCGA-NJ-A4YP-01 4 101947147 101947147 C A PPP3CA Nonsense_Mutation p.E481* 0.18 TCGA-NJ-A4YP-01 4 13604728 13604728 C A BOD1L1 Missense_Mutation p.A1266S 0.21 benign(0.062) TCGA-NJ-A4YP-01 4 138451878 138451878 G A PCDH18 Silent p.I455I 0.14 TCGA-NJ-A4YP-01 4 139981552 139981552 G A ELF2 Silent p.I349I 0.30 TCGA-NJ-A4YP-01 4 153258956 153258956 C T FBXW7 Missense_Mutation p.E287K 0.17 deleterious(0) probably_damaging(0.986) TCGA-NJ-A4YP-01 4 153259073 153259073 C A FBXW7 Nonsense_Mutation p.E248* 0.32 TCGA-NJ-A4YP-01 4 166232659 166232659 G T KLHL2 Missense_Mutation p.W431C 0.20 deleterious(0.01) probably_damaging(1) TCGA-NJ-A4YP-01 4 169208281 169208281 G C DDX60 Silent p.V419V 0.15 TCGA-NJ-A4YP-01 4 1808320 1808320 C G FGFR3 Missense_Mutation p.S695C 0.16 deleterious(0) possibly_damaging(0.904) TCGA-NJ-A4YP-01 4 183600966 183600966 C A TENM3 Missense_Mutation p.H492N 0.17 deleterious(0.01) benign(0.403) TCGA-NJ-A4YP-01 4 187005192 187005192 C G TLR3 Silent p.L784L 0.15 TCGA-NJ-A4YP-01 4 1980533 1980533 C T WHSC1 Missense_Mutation p.S1332L 0.19 tolerated(0.22) benign(0.007) TCGA-NJ-A4YP-01 4 39448619 39448619 G A KLB Nonsense_Mutation p.W758* 0.22 TCGA-NJ-A4YP-01 4 42022529 42022529 C G SLC30A9 Missense_Mutation p.S144C 0.20 deleterious(0.01) possibly_damaging(0.447) TCGA-NJ-A4YP-01 4 44682781 44682781 C T GUF1 Silent p.I116I 0.26 TCGA-NJ-A4YP-01 4 46334680 46334680 G A GABRA2 Silent p.F69F 0.10 TCGA-NJ-A4YP-01 4 46930564 46930564 G A GABRA4 Missense_Mutation p.A448V 0.22 tolerated_low_confidence(0.14) benign(0.019) TCGA-NJ-A4YP-01 4 501316 501316 G A PIGG Silent p.L231L 0.22 TCGA-NJ-A4YP-01 4 52894977 52894977 G T SGCB Missense_Mutation p.F180L 0.20 tolerated(0.09) possibly_damaging(0.793) TCGA-NJ-A4YP-01 4 57877218 57877218 G A POLR2B Missense_Mutation p.M584I 0.06 tolerated(0.34) benign(0.02) TCGA-NJ-A4YP-01 4 70513316 70513316 C A UGT2A1 Missense_Mutation p.G16V 0.19 deleterious(0.01) possibly_damaging(0.889) TCGA-NJ-A4YP-01 4 70513317 70513317 C A UGT2A1 Nonsense_Mutation p.G16* 0.19 TCGA-NJ-A4YP-01 4 74902980 74902980 C T CXCL3 Silent p.%3D 0.22 TCGA-NJ-A4YP-01 4 76452281 76452281 G C THAP6 Missense_Mutation p.E176Q 0.24 deleterious(0.01) possibly_damaging(0.471) TCGA-NJ-A4YP-01 4 76793183 76793183 C A PPEF2 Missense_Mutation p.R548S 0.19 deleterious(0.03) benign(0.293) TCGA-NJ-A4YP-01 4 76943590 76943590 C G CXCL10 Missense_Mutation p.K69N 0.23 tolerated(1) benign(0.001) TCGA-NJ-A4YP-01 4 90856201 90856201 T C MMRN1 Missense_Mutation p.V457A 0.23 tolerated(0.12) benign(0.08) TCGA-NJ-A4YP-01 4 91230708 91230708 C T CCSER1 Missense_Mutation p.H425Y 0.12 tolerated_low_confidence(0.71) benign(0.073) TCGA-NJ-A4YP-01 5 108714262 108714262 G A PJA2 Missense_Mutation p.S309F 0.19 deleterious(0.04) benign(0.012) TCGA-NJ-A4YP-01 5 108714857 108714857 G C PJA2 Missense_Mutation p.Q111E 0.27 tolerated(0.06) benign(0.008) TCGA-NJ-A4YP-01 5 132534868 132534868 G C FSTL4 Missense_Mutation p.I816M 0.17 deleterious(0) possibly_damaging(0.714) TCGA-NJ-A4YP-01 5 137426590 137426590 C A WNT8A Missense_Mutation p.T295N 0.19 tolerated(0.32) benign(0.401) TCGA-NJ-A4YP-01 5 13902205 13902205 G C DNAH5 Missense_Mutation p.Q563E 0.11 benign(0.149) TCGA-NJ-A4YP-01 5 139193057 139193057 C T PSD2 Missense_Mutation p.P179S 0.07 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YP-01 5 139886559 139886559 C T ANKHD1 Missense_Mutation p.S1183L 0.06 unknown(0) TCGA-NJ-A4YP-01 5 140181792 140181792 T A PCDHA3 Missense_Mutation p.L337Q 0.20 tolerated_low_confidence(0.07) possibly_damaging(0.799) TCGA-NJ-A4YP-01 5 140475572 140475572 G A PCDHB2 Missense_Mutation p.E400K 0.15 tolerated_low_confidence(0.54) benign(0.026) TCGA-NJ-A4YP-01 5 140741900 140741900 C - PCDHGB2 Frame_Shift_Del p.K734Sfs*35 0.22 TCGA-NJ-A4YP-01 5 140772753 140772753 G C PCDHGA8 Missense_Mutation p.D125H 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-NJ-A4YP-01 5 140794397 140794397 T A PCDHGA10 Nonsense_Mutation p.L552* 0.21 TCGA-NJ-A4YP-01 5 140812230 140812230 G T PCDHGA12 Missense_Mutation p.R635I 0.20 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-NJ-A4YP-01 5 145883539 145883539 C G TCERG1 Missense_Mutation p.I900M 0.25 deleterious(0.05) unknown(0) TCGA-NJ-A4YP-01 5 147781565 147781565 C G FBXO38 Missense_Mutation p.L95V 0.21 tolerated(0.35) probably_damaging(0.969) TCGA-NJ-A4YP-01 5 156022008 156022008 T C SGCD Missense_Mutation p.F150S 0.18 deleterious(0) possibly_damaging(0.828) TCGA-NJ-A4YP-01 5 159854878 159854878 C G PTTG1 Missense_Mutation p.S176C 0.17 tolerated(0.12) benign(0.046) TCGA-NJ-A4YP-01 5 170827897 170827897 G A NPM1 Missense_Mutation p.D213N 0.08 tolerated(0.12) benign(0.06) TCGA-NJ-A4YP-01 5 175775307 175775307 G A KIAA1191 Missense_Mutation p.S171L 0.20 deleterious(0) benign(0.034) TCGA-NJ-A4YP-01 5 175927109 175927109 C T FAF2 Nonsense_Mutation p.R373* 0.05 TCGA-NJ-A4YP-01 5 176830358 176830358 C T F12 Silent p.A476A 0.10 TCGA-NJ-A4YP-01 5 176867754 176867754 C T GRK6 Silent p.V486V 0.08 TCGA-NJ-A4YP-01 5 179225254 179225254 C G MGAT4B Missense_Mutation p.E527Q 0.41 tolerated(0.09) benign(0.009) TCGA-NJ-A4YP-01 5 179227062 179227062 C T MGAT4B Missense_Mutation p.D283N 0.20 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YP-01 5 45262242 45262242 G C HCN1 Silent p.P818P 0.33 TCGA-NJ-A4YP-01 5 55168206 55168206 C T IL31RA Silent p.T127T 0.17 TCGA-NJ-A4YP-01 5 72865490 72865490 C G UTP15 Silent p.L179L 0.24 TCGA-NJ-A4YP-01 5 80604808 80604808 G A ZCCHC9 Silent p.G193G 0.17 TCGA-NJ-A4YP-01 5 82808185 82808185 G A VCAN Missense_Mutation p.D338N 0.16 deleterious(0) probably_damaging(0.981) TCGA-NJ-A4YP-01 5 82841369 82841369 C A VCAN Nonsense_Mutation p.C3093* 0.17 TCGA-NJ-A4YP-01 5 94050520 94050520 G A MCTP1 Silent p.I894I 0.10 TCGA-NJ-A4YP-01 5 99871249 99871249 G T FAM174A Missense_Mutation p.Q5H 0.28 tolerated_low_confidence(1) benign(0) TCGA-NJ-A4YP-01 6 112420561 112420561 T - FAM229B Frame_Shift_Del p.L27* 0.29 TCGA-NJ-A4YP-01 6 116784478 116784478 C T FAM26F Silent p.I186I 0.24 TCGA-NJ-A4YP-01 6 116784533 116784533 C T FAM26F Silent p.L205L 0.33 TCGA-NJ-A4YP-01 6 13182882 13182882 G T PHACTR1 Nonsense_Mutation p.E45* 0.24 TCGA-NJ-A4YP-01 6 137519721 137519721 G C IFNGR1 Nonsense_Mutation p.S306* 0.07 TCGA-NJ-A4YP-01 6 151331058 151331058 G T MTHFD1L Silent p.T743T 0.23 TCGA-NJ-A4YP-01 6 161574502 161574502 G A AGPAT4 Silent p.F180F 0.18 TCGA-NJ-A4YP-01 6 24596317 24596317 G A KIAA0319 Silent p.F195F 0.10 TCGA-NJ-A4YP-01 6 26032173 26032173 G T HIST1H3B Missense_Mutation p.P39H 0.17 deleterious_low_confidence(0.01) benign(0.001) TCGA-NJ-A4YP-01 6 26252292 26252292 C G HIST1H2BH 3'UTR 0.20 TCGA-NJ-A4YP-01 6 26413540 26413540 G A BTN3A1 Missense_Mutation p.E388K 0.14 tolerated(0.22) benign(0.054) TCGA-NJ-A4YP-01 6 2685801 2685801 G A MYLK4 Silent p.F117F 0.04 TCGA-NJ-A4YP-01 6 27806062 27806062 G A HIST1H2AK Missense_Mutation p.S19F 0.18 deleterious_low_confidence(0.01) unknown(0) TCGA-NJ-A4YP-01 6 32036316 32036316 C G TNXB Missense_Mutation p.G2024A 0.12 benign(0.04) TCGA-NJ-A4YP-01 6 33373021 33373021 A G KIFC1 Silent p.G383G 0.32 TCGA-NJ-A4YP-01 6 33384897 33384897 C A CUTA Nonsense_Mutation p.E133* 0.12 TCGA-NJ-A4YP-01 6 34214850 34214850 C G C6orf1 Missense_Mutation p.R32S 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.895) TCGA-NJ-A4YP-01 6 37430668 37430668 G A CMTR1 Silent p.V463V 0.18 TCGA-NJ-A4YP-01 6 41654762 41654762 G A TFEB Intron 0.38 TCGA-NJ-A4YP-01 6 42995194 42995194 C T RRP36 Missense_Mutation p.R208W 0.19 deleterious(0) probably_damaging(0.91) TCGA-NJ-A4YP-01 6 42997081 42997081 C G RRP36 3'UTR 0.12 TCGA-NJ-A4YP-01 6 43308105 43308105 C T ZNF318 Missense_Mutation p.E1211K 0.11 possibly_damaging(0.542) TCGA-NJ-A4YP-01 6 43333177 43333177 C A ZNF318 Missense_Mutation p.R134I 0.24 possibly_damaging(0.736) TCGA-NJ-A4YP-01 6 46977836 46977836 G A GPR110 Silent p.Y445Y 0.05 TCGA-NJ-A4YP-01 6 52103659 52103659 G A IL17F Silent p.F41F 0.20 TCGA-NJ-A4YP-01 6 53516497 53516497 C T KLHL31 Missense_Mutation p.E602K 0.11 deleterious(0.01) possibly_damaging(0.797) TCGA-NJ-A4YP-01 6 57018737 57018737 G C ZNF451 Missense_Mutation p.E988Q 0.11 tolerated_low_confidence(0.06) probably_damaging(0.997) TCGA-NJ-A4YP-01 6 80223453 80223453 G A LCA5 Missense_Mutation p.R66W 0.23 deleterious(0) possibly_damaging(0.885) TCGA-NJ-A4YP-01 6 83847154 83847154 G A DOPEY1 Silent p.V1131V 0.14 TCGA-NJ-A4YP-01 6 93956608 93956608 C A EPHA7 Missense_Mutation p.E876D 0.18 tolerated(1) benign(0) TCGA-NJ-A4YP-01 7 102755612 102755612 C T NAPEPLD Missense_Mutation p.M317I 0.14 deleterious(0.01) possibly_damaging(0.517) TCGA-NJ-A4YP-01 7 102960065 102960065 C T DNAJC2 Silent p.L411L 0.07 TCGA-NJ-A4YP-01 7 103197602 103197602 G T RELN Silent p.T1873T 0.15 TCGA-NJ-A4YP-01 7 105187513 105187513 C G RINT1 Silent p.L224L 0.06 TCGA-NJ-A4YP-01 7 106851020 106851020 G T COG5 Missense_Mutation p.Q807K 0.21 tolerated(0.15) benign(0.017) TCGA-NJ-A4YP-01 7 113558401 113558401 T C PPP1R3A Silent p.T217T 0.23 TCGA-NJ-A4YP-01 7 117375335 117375335 T C CTTNBP2 Missense_Mutation p.T1226A 0.06 tolerated(0.14) benign(0.129) TCGA-NJ-A4YP-01 7 120629782 120629782 G A CPED1 Missense_Mutation p.R36Q 0.06 tolerated(0.4) benign(0.313) TCGA-NJ-A4YP-01 7 122338834 122338834 G A RNF133 Missense_Mutation p.H47Y 0.18 tolerated(0.36) benign(0.005) TCGA-NJ-A4YP-01 7 127014756 127014756 G A ZNF800 Nonsense_Mutation p.Q212* 0.26 TCGA-NJ-A4YP-01 7 132937929 132937929 C G EXOC4 Silent p.L24L 0.05 TCGA-NJ-A4YP-01 7 134889090 134889090 G C WDR91 Nonsense_Mutation p.S274* 0.27 TCGA-NJ-A4YP-01 7 143027941 143027941 G T CLCN1 Silent p.T310T 0.27 TCGA-NJ-A4YP-01 7 143096457 143096457 G A EPHA1 Silent p.L295L 0.17 TCGA-NJ-A4YP-01 7 14775721 14775721 G A DGKB Silent p.N89N 0.21 TCGA-NJ-A4YP-01 7 149461792 149461792 G A ZNF467 3'UTR 0.38 TCGA-NJ-A4YP-01 7 150711226 150711226 A T NOS3 Missense_Mutation p.D1194V 0.36 deleterious_low_confidence(0) benign(0.03) TCGA-NJ-A4YP-01 7 154875961 154875961 G C HTR5A Missense_Mutation p.E280Q 0.27 deleterious(0) probably_damaging(0.962) TCGA-NJ-A4YP-01 7 19765303 19765303 G T TMEM196 Missense_Mutation p.S98Y 0.09 deleterious(0.03) possibly_damaging(0.781) TCGA-NJ-A4YP-01 7 21789371 21789371 G T DNAH11 Missense_Mutation p.V2924F 0.13 possibly_damaging(0.813) TCGA-NJ-A4YP-01 7 22766845 22766845 G A IL6 5'UTR 0.26 TCGA-NJ-A4YP-01 7 26411631 26411631 G A SNX10 Missense_Mutation p.D168N 0.09 tolerated(0.51) benign(0.025) TCGA-NJ-A4YP-01 7 28610085 28610085 C T CREB5 Nonsense_Mutation p.Q132* 0.26 TCGA-NJ-A4YP-01 7 30492319 30492319 C T NOD1 Missense_Mutation p.M238I 0.23 tolerated(0.18) benign(0.01) TCGA-NJ-A4YP-01 7 36934523 36934523 C T ELMO1 Missense_Mutation p.E513K 0.10 deleterious(0.01) probably_damaging(0.989) TCGA-NJ-A4YP-01 7 4169539 4169539 G T SDK1 Splice_Site p.X1314_splice 0.17 TCGA-NJ-A4YP-01 7 43843292 43843292 G C BLVRA Missense_Mutation p.E160Q 0.23 tolerated(0.39) benign(0.016) TCGA-NJ-A4YP-01 7 48520719 48520719 G A ABCA13 Silent p.E4354E 0.27 TCGA-NJ-A4YP-01 7 53103834 53103834 G C POM121L12 Missense_Mutation p.R157T 0.17 tolerated(0.71) possibly_damaging(0.765) TCGA-NJ-A4YP-01 7 56127301 56127301 G T CCT6A Nonsense_Mutation p.G345* 0.19 TCGA-NJ-A4YP-01 7 6196425 6196425 G A USP42 Missense_Mutation p.A1228T 0.33 tolerated(0.19) benign(0.017) TCGA-NJ-A4YP-01 7 62752285 62752285 G T ZNF733P RNA 0.18 TCGA-NJ-A4YP-01 7 63982109 63982109 C A ZNF680 Missense_Mutation p.K341N 0.22 deleterious(0.02) benign(0.212) TCGA-NJ-A4YP-01 7 63982111 63982111 T A ZNF680 Nonsense_Mutation p.K341* 0.21 TCGA-NJ-A4YP-01 7 64166700 64166700 A T ZNF107 Splice_Site p.X7_splice 0.12 TCGA-NJ-A4YP-01 7 72419226 72419226 C G POM121 3'UTR 0.06 TCGA-NJ-A4YP-01 7 7480459 7480459 G A COL28A1 Nonsense_Mutation p.Q562* 0.07 TCGA-NJ-A4YP-01 7 75625800 75625800 C A STYXL1 Missense_Mutation p.D310Y 0.27 deleterious(0) possibly_damaging(0.873) TCGA-NJ-A4YP-01 7 75625801 75625801 C T STYXL1 Missense_Mutation p.M309I 0.27 tolerated(0.07) benign(0.003) TCGA-NJ-A4YP-01 7 88424282 88424282 T C C7orf62 5'UTR 0.12 TCGA-NJ-A4YP-01 7 93116258 93116258 C A CALCR Silent p.L30L 0.16 TCGA-NJ-A4YP-01 7 97873911 97873911 C G TECPR1 Missense_Mutation p.R168T 0.27 deleterious(0) benign(0.393) TCGA-NJ-A4YP-01 8 100523679 100523679 C T VPS13B Silent p.V1549V 0.16 TCGA-NJ-A4YP-01 8 104427284 104427284 G A DCAF13 Silent p.T22T 0.14 TCGA-NJ-A4YP-01 8 10469027 10469027 G A RP1L1 Missense_Mutation p.P861S 0.33 benign(0.343) TCGA-NJ-A4YP-01 8 10469814 10469814 G T RP1L1 Silent p.T598T 0.28 TCGA-NJ-A4YP-01 8 113236853 113236853 G A CSMD3 3'UTR 0.19 TCGA-NJ-A4YP-01 8 113702250 113702250 C A CSMD3 Missense_Mutation p.G668C 0.14 deleterious(0) probably_damaging(1) TCGA-NJ-A4YP-01 8 116426596 116426596 C G TRPS1 Silent p.A1180A 0.17 TCGA-NJ-A4YP-01 8 11703277 11703277 C T CTSB Missense_Mutation p.G272E 0.18 deleterious(0.01) possibly_damaging(0.895) TCGA-NJ-A4YP-01 8 124266021 124266021 C G ZHX1 Missense_Mutation p.W722C 0.22 deleterious(0) probably_damaging(1) TCGA-NJ-A4YP-01 8 131896840 131896840 C A ADCY8 Silent p.L693L 0.16 TCGA-NJ-A4YP-01 8 133920472 133920472 C T TG Nonsense_Mutation p.Q1297* 0.14 TCGA-NJ-A4YP-01 8 30703508 30703508 C T TEX15 Missense_Mutation p.R1009K 0.09 tolerated(0.07) probably_damaging(0.996) TCGA-NJ-A4YP-01 8 38385958 38385958 T A C8orf86 Silent p.T66T 0.24 TCGA-NJ-A4YP-01 8 38840066 38840066 C T HTRA4 Silent p.L388L 0.12 TCGA-NJ-A4YP-01 8 41164258 41164258 G C SFRP1 Intron 0.33 TCGA-NJ-A4YP-01 8 41790583 41790583 C T KAT6A Missense_Mutation p.E1719K 0.06 unknown(0) TCGA-NJ-A4YP-01 8 42037474 42037474 C A PLAT Nonsense_Mutation p.E445* 0.24 TCGA-NJ-A4YP-01 8 62475342 62475342 C G ASPH Missense_Mutation p.L466F 0.18 deleterious(0) possibly_damaging(0.902) TCGA-NJ-A4YP-01 8 6679397 6679397 G C XKR5 RNA 0.18 TCGA-NJ-A4YP-01 8 75928922 75928922 A T CRISPLD1 Missense_Mutation p.I284L 0.17 tolerated(0.17) benign(0.001) TCGA-NJ-A4YP-01 8 75929290 75929290 G A CRISPLD1 Missense_Mutation p.C313Y 0.24 deleterious(0) probably_damaging(1) TCGA-NJ-A4YP-01 8 8235408 8235408 C A SGK223 Missense_Mutation p.G171C 0.26 probably_damaging(0.925) TCGA-NJ-A4YP-01 8 82359623 82359623 G A PMP2 5'UTR 0.23 TCGA-NJ-A4YP-01 8 87242267 87242267 T G SLC7A13 Missense_Mutation p.Q80H 0.18 tolerated(0.75) benign(0.012) TCGA-NJ-A4YP-01 8 87645071 87645071 C T CNGB3 Missense_Mutation p.G410D 0.17 deleterious(0) probably_damaging(0.952) TCGA-NJ-A4YP-01 8 92352717 92352717 G T SLC26A7 Missense_Mutation p.A322S 0.27 deleterious(0) possibly_damaging(0.84) TCGA-NJ-A4YP-01 8 94746110 94746110 G A RBM12B Silent p.F843F 0.10 TCGA-NJ-A4YP-01 8 99719466 99719466 T C STK3 Missense_Mutation p.K170R 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-NJ-A4YP-01 9 100204142 100204142 G T TDRD7 Missense_Mutation p.W280C 0.19 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YP-01 9 103271335 103271335 C G TMEFF1 Missense_Mutation p.Q119E 0.15 tolerated(0.08) benign(0.089) TCGA-NJ-A4YP-01 9 104449474 104449474 A T GRIN3A Silent p.L236L 0.21 TCGA-NJ-A4YP-01 9 111658818 111658818 A G IKBKAP Silent p.Y898Y 0.21 TCGA-NJ-A4YP-01 9 113547974 113547974 C A MUSK Missense_Mutation p.A585E 0.18 deleterious(0) probably_damaging(1) TCGA-NJ-A4YP-01 9 131301915 131301915 G T GLE1 Missense_Mutation p.M634I 0.06 deleterious(0.02) benign(0.385) TCGA-NJ-A4YP-01 9 131939601 131939601 G C IER5L Missense_Mutation p.S244W 0.07 deleterious_low_confidence(0) unknown(0) TCGA-NJ-A4YP-01 9 132671200 132671200 T A FNBP1 Missense_Mutation p.N422Y 0.30 deleterious(0) benign(0.372) TCGA-NJ-A4YP-01 9 135413007 135413007 G A C9orf171 Missense_Mutation p.D218N 0.16 deleterious(0) probably_damaging(0.988) TCGA-NJ-A4YP-01 9 136029195 136029195 C G GBGT1 Missense_Mutation p.R271S 0.24 tolerated(0.06) benign(0.072) TCGA-NJ-A4YP-01 9 136629040 136629040 C G VAV2 3'UTR 0.25 TCGA-NJ-A4YP-01 9 140059721 140059721 C T GRIN1 Silent p.F912F 0.16 TCGA-NJ-A4YP-01 9 140135804 140135804 G C TUBB4B 5'UTR 0.22 TCGA-NJ-A4YP-01 9 140444638 140444638 C G PNPLA7 Missense_Mutation p.E4D 0.14 tolerated_low_confidence(0.21) benign(0.006) TCGA-NJ-A4YP-01 9 140995585 140995586 - T CACNA1B Intron 0.29 TCGA-NJ-A4YP-01 9 14748416 14748416 G T FREM1 Missense_Mutation p.R1927S 0.31 tolerated(0.74) benign(0.081) TCGA-NJ-A4YP-01 9 154768 154768 G C CBWD1 Silent p.L201L 0.13 TCGA-NJ-A4YP-01 9 20413882 20413882 G A MLLT3 Missense_Mutation p.S321F 0.06 tolerated(0.72) probably_damaging(0.986) TCGA-NJ-A4YP-01 9 21227646 21227646 G C IFNA17 Missense_Mutation p.S176C 0.06 deleterious(0.01) benign(0.426) TCGA-NJ-A4YP-01 9 23762203 23762203 A T ELAVL2 Silent p.T10T 0.20 TCGA-NJ-A4YP-01 9 34311019 34311019 C T KIF24 Missense_Mutation p.R109K 0.17 tolerated(1) benign(0.002) TCGA-NJ-A4YP-01 9 35607591 35607591 G T TESK1 Missense_Mutation p.R211S 0.16 tolerated(0.13) possibly_damaging(0.484) TCGA-NJ-A4YP-01 9 35607664 35607664 G A TESK1 Missense_Mutation p.E236K 0.21 deleterious(0) probably_damaging(1) TCGA-NJ-A4YP-01 9 35752111 35752111 C T RGP1 Silent p.L307L 0.24 TCGA-NJ-A4YP-01 9 37516041 37516041 G A FBXO10 Silent p.I852I 0.34 TCGA-NJ-A4YP-01 9 77386716 77386716 G A TRPM6 Missense_Mutation p.H1147Y 0.15 tolerated(0.17) benign(0.014) TCGA-NJ-A4YP-01 9 79320766 79320766 C G PRUNE2 Missense_Mutation p.D2142H 0.07 tolerated(0.08) benign(0.023) TCGA-NJ-A4YP-01 9 80409473 80409473 C T GNAQ Missense_Mutation p.R214K 0.08 tolerated(0.73) benign(0.218) TCGA-NJ-A4YP-01 9 80851438 80851438 C G CEP78 Missense_Mutation p.L58V 0.22 tolerated(0.16) benign(0.265) TCGA-NJ-A4YP-01 9 82333636 82333636 G C TLE4 Splice_Site p.X447_splice 0.15 TCGA-NJ-A4YP-01 9 84267185 84267185 G A TLE1 Nonsense_Mutation p.Q106* 0.22 TCGA-NJ-A4YP-01 9 90503533 90503533 C A SPATA31E1 Nonsense_Mutation p.C1377* 0.08 TCGA-NJ-A4YP-01 X 100809149 100809149 C T ARMCX1 Silent p.F412F 0.42 TCGA-NJ-A4YP-01 X 110494154 110494154 C A CAPN6 Missense_Mutation p.Q383H 0.29 tolerated(0.18) probably_damaging(0.934) TCGA-NJ-A4YP-01 X 135579752 135579752 G T HTATSF1 Intron 0.38 TCGA-NJ-A4YP-01 X 13764992 13764992 G C OFD1 Missense_Mutation p.E250Q 0.24 deleterious(0.02) probably_damaging(0.911) TCGA-NJ-A4YP-01 X 153593022 153593022 C A FLNA Missense_Mutation p.D632Y 0.45 deleterious(0.02) probably_damaging(0.993) TCGA-NJ-A4YP-01 X 30268607 30268607 C A MAGEB1 5'UTR 0.20 TCGA-NJ-A4YP-01 X 70387540 70387540 T G NLGN3 Missense_Mutation p.F531L 0.08 deleterious(0.04) benign(0.074) TCGA-NJ-A4YP-01 X 71522722 71522722 C T CITED1 Missense_Mutation p.E26K 0.44 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-NJ-A4YP-01 Y 14903476 14903476 G A USP9Y Silent p.Q1244Q 0.38 TCGA-NJ-A4YQ-01 10 101825118 101825118 C A CPN1 Nonsense_Mutation p.E196* 0.08 TCGA-NJ-A4YQ-01 10 105209550 105209550 G T CALHM2 Missense_Mutation p.P50Q 0.18 deleterious(0.02) probably_damaging(0.992) TCGA-NJ-A4YQ-01 10 108923747 108923747 A T SORCS1 Missense_Mutation p.W180R 0.16 deleterious(0) probably_damaging(0.979) TCGA-NJ-A4YQ-01 10 115529575 115529575 C A PLEKHS1 Silent p.L150L 0.21 TCGA-NJ-A4YQ-01 10 115973184 115973184 A T TDRD1 Silent p.T637T 0.18 TCGA-NJ-A4YQ-01 10 117061366 117061366 T A ATRNL1 Silent p.V877V 0.20 TCGA-NJ-A4YQ-01 10 117075205 117075205 C A ATRNL1 Missense_Mutation p.P999H 0.16 deleterious(0) probably_damaging(0.968) TCGA-NJ-A4YQ-01 10 117228684 117228684 G T ATRNL1 Nonsense_Mutation p.G1167* 0.17 TCGA-NJ-A4YQ-01 10 124268283 124268283 A T HTRA1 Nonsense_Mutation p.K373* 0.16 TCGA-NJ-A4YQ-01 10 124268284 124268284 A T HTRA1 Missense_Mutation p.K373I 0.18 deleterious(0) benign(0.343) TCGA-NJ-A4YQ-01 10 126714996 126714996 A - CTBP2 Frame_Shift_Del p.C445Afs*3 0.15 TCGA-NJ-A4YQ-01 10 127755359 127755359 C A ADAM12 Missense_Mutation p.C450F 0.13 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 10 128019079 128019079 C A ADAM12 Splice_Site p.X30_splice 0.14 TCGA-NJ-A4YQ-01 10 13494596 13494596 C T BEND7 Missense_Mutation p.V324I 0.17 tolerated_low_confidence(0.07) probably_damaging(0.995) TCGA-NJ-A4YQ-01 10 135369108 135369108 G T SYCE1 Silent p.R275R 0.24 TCGA-NJ-A4YQ-01 10 17365095 17365095 C A ST8SIA6 Missense_Mutation p.V233L 0.08 deleterious(0) probably_damaging(0.98) TCGA-NJ-A4YQ-01 10 24922387 24922387 A G ARHGAP21 Silent p.N128N 0.18 TCGA-NJ-A4YQ-01 10 25312233 25312233 A T THNSL1 Missense_Mutation p.K27N 0.24 tolerated_low_confidence(0.15) benign(0.05) TCGA-NJ-A4YQ-01 10 27389173 27389173 C A ANKRD26 Missense_Mutation p.G28V 0.14 tolerated(0.29) benign(0.05) TCGA-NJ-A4YQ-01 10 28276389 28276389 C A ARMC4 Missense_Mutation p.S103I 0.16 deleterious(0) possibly_damaging(0.796) TCGA-NJ-A4YQ-01 10 38404208 38404208 G T ZNF37A Missense_Mutation p.Q76H 0.24 deleterious(0.03) benign(0.36) TCGA-NJ-A4YQ-01 10 402210 402210 C G DIP2C Intron 0.29 TCGA-NJ-A4YQ-01 10 43612112 43612112 C A RET Silent p.V739V 0.12 TCGA-NJ-A4YQ-01 10 44873823 44873823 C A CXCL12 Intron 0.12 TCGA-NJ-A4YQ-01 10 49376706 49376706 G T FRMPD2 Missense_Mutation p.Q1157K 0.12 tolerated(0.52) benign(0.037) TCGA-NJ-A4YQ-01 10 50724389 50724389 T A ERCC6-PGBD3 Missense_Mutation p.M726L 0.08 tolerated_low_confidence(1) unknown(0) TCGA-NJ-A4YQ-01 10 50952058 50952058 C A OGDHL Missense_Mutation p.D615Y 0.13 deleterious(0.01) benign(0.365) TCGA-NJ-A4YQ-01 10 5496922 5496922 A G NET1 Missense_Mutation p.I346M 0.13 deleterious(0.01) possibly_damaging(0.762) TCGA-NJ-A4YQ-01 10 5498651 5498651 T C NET1 Silent p.C495C 0.13 TCGA-NJ-A4YQ-01 10 61011294 61011294 T C FAM13C Intron 0.19 TCGA-NJ-A4YQ-01 10 68688096 68688096 C A LRRTM3 Silent p.P474P 0.10 TCGA-NJ-A4YQ-01 10 72307173 72307173 C A PALD1 Silent p.R745R 0.24 TCGA-NJ-A4YQ-01 10 8100626 8100626 C G GATA3 Missense_Mutation p.H200Q 0.12 tolerated(0.29) benign(0.189) TCGA-NJ-A4YQ-01 10 82182201 82182201 A T FAM213A Silent p.L69L 0.20 TCGA-NJ-A4YQ-01 10 85984142 85984142 G T LRIT2 Missense_Mutation p.P280H 0.18 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 10 98130016 98130016 G T TLL2 Missense_Mutation p.Q907K 0.18 tolerated(0.32) benign(0.081) TCGA-NJ-A4YQ-01 11 106558145 106558145 C T GUCY1A2 3'UTR 0.19 TCGA-NJ-A4YQ-01 11 106680934 106680934 G - GUCY1A2 Frame_Shift_Del p.L493Ffs*10 0.09 TCGA-NJ-A4YQ-01 11 106810812 106810812 C A GUCY1A2 Missense_Mutation p.G194C 0.15 deleterious(0) probably_damaging(0.967) TCGA-NJ-A4YQ-01 11 107427549 107427549 C A ALKBH8 Nonsense_Mutation p.E104* 0.09 TCGA-NJ-A4YQ-01 11 1087465 1087465 C A MUC2 Nonsense_Mutation p.Y1072* 0.13 TCGA-NJ-A4YQ-01 11 110007545 110007545 G T ZC3H12C Missense_Mutation p.W60L 0.16 tolerated_low_confidence(0.16) benign(0.008) TCGA-NJ-A4YQ-01 11 113103955 113103955 G T NCAM1 Missense_Mutation p.G586W 0.13 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 11 113103956 113103956 G T NCAM1 Missense_Mutation p.G586V 0.13 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 11 113270743 113270743 T G ANKK1 Missense_Mutation p.N684K 0.12 deleterious(0) benign(0.155) TCGA-NJ-A4YQ-01 11 114113009 114113009 G C ZBTB16 Missense_Mutation p.R525P 0.11 deleterious(0) probably_damaging(0.976) TCGA-NJ-A4YQ-01 11 114316770 114316770 A G REXO2 Missense_Mutation p.Y164C 0.16 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 11 117232681 117232684 CTGG TTT CEP164 Frame_Shift_Del p.S175Ffs*40 0.12 TCGA-NJ-A4YQ-01 11 118886114 118886114 C T CCDC84 Silent p.G301G 0.16 TCGA-NJ-A4YQ-01 11 118889410 118889410 G T TRAPPC4 5'UTR 0.14 TCGA-NJ-A4YQ-01 11 123484274 123484274 C G GRAMD1B Missense_Mutation p.A569G 0.14 tolerated(0.43) benign(0.146) TCGA-NJ-A4YQ-01 11 123504842 123504842 G T SCN3B 3'UTR 0.21 TCGA-NJ-A4YQ-01 11 123601240 123601240 C T ZNF202 Silent p.T119T 0.13 TCGA-NJ-A4YQ-01 11 123995097 123995097 G C VWA5A Intron 0.20 TCGA-NJ-A4YQ-01 11 124120705 124120705 C A OR8G1 Missense_Mutation p.P95T 0.09 tolerated_low_confidence(0.11) benign(0.02) TCGA-NJ-A4YQ-01 11 124440079 124440079 G T OR8A1 Missense_Mutation p.D39Y 0.15 deleterious(0) possibly_damaging(0.615) TCGA-NJ-A4YQ-01 11 124757285 124757285 C A ROBO4 Nonsense_Mutation p.E723* 0.21 TCGA-NJ-A4YQ-01 11 125255455 125255455 T - PKNOX2 Frame_Shift_Del p.F80Sfs*4 0.13 TCGA-NJ-A4YQ-01 11 125330419 125330419 G A FEZ1 Silent p.T214T 0.19 TCGA-NJ-A4YQ-01 11 125474073 125474073 G C STT3A Missense_Mutation p.A147P 0.20 deleterious(0.02) probably_damaging(0.988) TCGA-NJ-A4YQ-01 11 125889635 125889635 T C CDON Silent p.T125T 0.12 TCGA-NJ-A4YQ-01 11 126201400 126201400 G T DCPS Missense_Mutation p.R159S 0.12 deleterious(0.05) benign(0.001) TCGA-NJ-A4YQ-01 11 17316912 17316912 G A NUCB2 Silent p.L14L 0.15 TCGA-NJ-A4YQ-01 11 18732325 18732325 C A IGSF22 Missense_Mutation p.A817S 0.27 tolerated(0.42) benign(0.005) TCGA-NJ-A4YQ-01 11 20515790 20515790 A G PRMT3 Silent p.S492S 0.22 TCGA-NJ-A4YQ-01 11 20530003 20530003 G C PRMT3 3'UTR 0.10 TCGA-NJ-A4YQ-01 11 27114844 27114844 C G BBOX1 Missense_Mutation p.A155G 0.19 deleterious(0) probably_damaging(0.981) TCGA-NJ-A4YQ-01 11 293192 293192 G T ATHL1 Missense_Mutation p.G434W 0.15 deleterious(0.04) benign(0.111) TCGA-NJ-A4YQ-01 11 293193 293193 G C ATHL1 Missense_Mutation p.G434A 0.15 tolerated(0.12) benign(0.081) TCGA-NJ-A4YQ-01 11 30946867 30946867 T C DCDC1 Missense_Mutation p.R996G 0.15 deleterious(0) benign(0.291) TCGA-NJ-A4YQ-01 11 33581437 33581437 C T KIAA1549L Missense_Mutation p.P1036L 0.17 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 11 3430124 3430124 C A TSSC2 RNA 0.20 TCGA-NJ-A4YQ-01 11 36248807 36248807 C A LDLRAD3 Missense_Mutation p.H209Q 0.24 deleterious(0.05) possibly_damaging(0.528) TCGA-NJ-A4YQ-01 11 4608496 4608496 C A OR52I2 Missense_Mutation p.R152S 0.12 deleterious(0) probably_damaging(0.92) TCGA-NJ-A4YQ-01 11 51515984 51515984 C T OR4C46 Missense_Mutation p.L235F 0.14 deleterious_low_confidence(0.04) benign(0.311) TCGA-NJ-A4YQ-01 11 5443730 5443730 T G OR51Q1 Missense_Mutation p.F100L 0.13 tolerated(0.95) benign(0.212) TCGA-NJ-A4YQ-01 11 55339996 55339996 G T OR4C16 Missense_Mutation p.M131I 0.14 tolerated(0.32) benign(0.001) TCGA-NJ-A4YQ-01 11 55406177 55406177 G T OR4P4 Missense_Mutation p.G115V 0.27 tolerated(0.82) benign(0.025) TCGA-NJ-A4YQ-01 11 55433190 55433190 T A OR4C6 Nonsense_Mutation p.L183* 0.17 TCGA-NJ-A4YQ-01 11 55563154 55563154 G C OR5D14 Silent p.V41V 0.20 TCGA-NJ-A4YQ-01 11 55659078 55659078 C A TRIM51 Silent p.L443L 0.09 TCGA-NJ-A4YQ-01 11 55681186 55681186 G A OR5W2 Silent p.S291S 0.09 TCGA-NJ-A4YQ-01 11 56043637 56043637 A G OR5T1 Missense_Mutation p.T175A 0.14 tolerated(0.09) benign(0.17) TCGA-NJ-A4YQ-01 11 56043668 56043668 A T OR5T1 Missense_Mutation p.E185V 0.13 tolerated(0.34) benign(0.03) TCGA-NJ-A4YQ-01 11 56044093 56044093 T C OR5T1 Nonstop_Mutation p.*327Qext*2 0.14 TCGA-NJ-A4YQ-01 11 56058304 56058304 G T OR8H1 Missense_Mutation p.P79T 0.14 deleterious(0) probably_damaging(0.931) TCGA-NJ-A4YQ-01 11 56143710 56143710 G T OR8U1 Missense_Mutation p.G204V 0.11 deleterious(0.02) probably_damaging(0.973) TCGA-NJ-A4YQ-01 11 56237872 56237872 G T OR5M3 Silent p.I34I 0.12 TCGA-NJ-A4YQ-01 11 56310102 56310102 G T OR5M11 Missense_Mutation p.T211N 0.09 deleterious(0.02) benign(0.392) TCGA-NJ-A4YQ-01 11 56344315 56344315 T A OR5M10 Nonsense_Mutation p.R295* 0.15 TCGA-NJ-A4YQ-01 11 58338125 58338125 T A LPXN Silent p.P30P 0.11 TCGA-NJ-A4YQ-01 11 58482882 58482882 G T GLYAT Silent p.V32V 0.10 TCGA-NJ-A4YQ-01 11 5862647 5862647 G T OR52E6 Missense_Mutation p.L161M 0.16 tolerated(0.24) probably_damaging(0.933) TCGA-NJ-A4YQ-01 11 60233596 60233596 C - MS4A1 Frame_Shift_Del p.Q181Nfs*16 0.12 TCGA-NJ-A4YQ-01 11 61511784 61511784 G T DAGLA Silent p.S984S 0.14 TCGA-NJ-A4YQ-01 11 62377136 62377136 C A EML3 Missense_Mutation p.G200V 0.12 deleterious(0.01) probably_damaging(1) TCGA-NJ-A4YQ-01 11 62398635 62398635 C T GANAB Missense_Mutation p.M361I 0.11 tolerated(0.43) benign(0.009) TCGA-NJ-A4YQ-01 11 63059081 63059081 G C SLC22A10 Missense_Mutation p.V158L 0.12 tolerated(0.33) benign(0.107) TCGA-NJ-A4YQ-01 11 64120308 64120308 G T CCDC88B Missense_Mutation p.R1150L 0.17 deleterious(0.01) probably_damaging(0.962) TCGA-NJ-A4YQ-01 11 65793385 65793385 C A CATSPER1 Missense_Mutation p.G156C 0.08 deleterious(0.03) probably_damaging(0.984) TCGA-NJ-A4YQ-01 11 66325229 66325229 C A CTD-3074O7.2 3'Flank 0.13 TCGA-NJ-A4YQ-01 11 66475182 66475182 G A SPTBN2 Silent p.A486A 0.07 TCGA-NJ-A4YQ-01 11 66478175 66478175 C G SPTBN2 Silent p.L317L 0.15 TCGA-NJ-A4YQ-01 11 68029452 68029452 C A C11orf24 Silent p.G337G 0.19 TCGA-NJ-A4YQ-01 11 6815840 6815840 A G OR6A2 3'UTR 0.24 TCGA-NJ-A4YQ-01 11 68707029 68707029 G T IGHMBP2 Missense_Mutation p.A938S 0.14 tolerated(0.16) possibly_damaging(0.449) TCGA-NJ-A4YQ-01 11 71907192 71907192 G T FOLR1 Missense_Mutation p.A249S 0.20 tolerated(0.74) unknown(0) TCGA-NJ-A4YQ-01 11 76255427 76255427 A G C11orf30 Missense_Mutation p.Q945R 0.09 tolerated_low_confidence(0.35) benign(0.275) TCGA-NJ-A4YQ-01 11 76886496 76886496 A T MYO7A Nonsense_Mutation p.K725* 0.10 TCGA-NJ-A4YQ-01 11 7818310 7818310 G T OR5P2 Missense_Mutation p.S60R 0.11 deleterious(0.01) benign(0.111) TCGA-NJ-A4YQ-01 11 78380493 78380493 G C TENM4 Silent p.R2299R 0.16 TCGA-NJ-A4YQ-01 11 78440540 78440540 G T TENM4 Missense_Mutation p.A1096E 0.16 deleterious(0) possibly_damaging(0.828) TCGA-NJ-A4YQ-01 11 8060289 8060289 G T TUB 5'UTR 0.20 TCGA-NJ-A4YQ-01 11 86161369 86161369 C A ME3 Missense_Mutation p.V331L 0.12 tolerated(0.07) benign(0.153) TCGA-NJ-A4YQ-01 11 92086549 92086549 C A FAT3 Missense_Mutation p.P424H 0.19 benign(0.031) TCGA-NJ-A4YQ-01 11 92623757 92623757 G T FAT3 Missense_Mutation p.Q4416H 0.09 benign(0.002) TCGA-NJ-A4YQ-01 12 101551147 101551147 T G SLC5A8 Silent p.P581P 0.30 TCGA-NJ-A4YQ-01 12 107075928 107075928 G T RFX4 Intron 0.15 TCGA-NJ-A4YQ-01 12 108051303 108051303 G C BTBD11 Missense_Mutation p.E1041D 0.11 tolerated(0.08) benign(0.07) TCGA-NJ-A4YQ-01 12 111352081 111352081 C A MYL2 Silent p.V61V 0.13 TCGA-NJ-A4YQ-01 12 111748359 111748359 C A CUX2 Silent p.I591I 0.15 TCGA-NJ-A4YQ-01 12 111748360 111748360 C A CUX2 Missense_Mutation p.L592I 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-NJ-A4YQ-01 12 111902513 111902513 G A ATXN2 Missense_Mutation p.P1108L 0.11 possibly_damaging(0.747) TCGA-NJ-A4YQ-01 12 112308893 112308893 C T MAPKAPK5 Missense_Mutation p.A163V 0.16 tolerated(0.12) benign(0.306) TCGA-NJ-A4YQ-01 12 112677017 112677017 C G HECTD4 Missense_Mutation p.R1564P 0.17 benign(0.258) TCGA-NJ-A4YQ-01 12 113442939 113442939 G A OAS2 Silent p.K460K 0.14 TCGA-NJ-A4YQ-01 12 113445588 113445588 C A OAS2 Missense_Mutation p.Q579K 0.09 tolerated(0.15) benign(0.138) TCGA-NJ-A4YQ-01 12 11545752 11545752 G A PRB2 3'UTR 0.19 TCGA-NJ-A4YQ-01 12 116443771 116443771 C A MED13L Missense_Mutation p.R791I 0.18 deleterious(0.03) unknown(0) TCGA-NJ-A4YQ-01 12 119568529 119568529 C A SRRM4 Missense_Mutation p.H221N 0.10 tolerated_low_confidence(0.09) benign(0.096) TCGA-NJ-A4YQ-01 12 121000748 121000748 A G RNF10 Missense_Mutation p.T377A 0.13 tolerated(0.29) benign(0) TCGA-NJ-A4YQ-01 12 121891041 121891041 C A KDM2B Missense_Mutation p.R614L 0.15 deleterious(0.04) probably_damaging(0.946) TCGA-NJ-A4YQ-01 12 124191287 124191287 A T TCTN2 Missense_Mutation p.N595I 0.20 tolerated(0.23) benign(0.004) TCGA-NJ-A4YQ-01 12 124382516 124382516 T A DNAH10 Splice_Site p.X3042_splice 0.22 TCGA-NJ-A4YQ-01 12 124496713 124496713 T G ZNF664 Missense_Mutation p.C8G 0.14 deleterious(0) probably_damaging(0.976) TCGA-NJ-A4YQ-01 12 124497351 124497351 C G ZNF664 Silent p.V220V 0.10 TCGA-NJ-A4YQ-01 12 125576001 125576001 G T AACS Nonsense_Mutation p.E168* 0.06 TCGA-NJ-A4YQ-01 12 130184741 130184741 G T TMEM132D Silent p.A194A 0.14 TCGA-NJ-A4YQ-01 12 130648338 130648338 G T FZD10 Missense_Mutation p.G284V 0.11 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 12 14599921 14599921 G T ATF7IP Splice_Site p.X644_splice 0.10 TCGA-NJ-A4YQ-01 12 21467516 21467516 A T SLCO1A2 Missense_Mutation p.F101Y 0.20 deleterious(0.05) probably_damaging(0.974) TCGA-NJ-A4YQ-01 12 2717774 2717774 A G CACNA1C Missense_Mutation p.I1172V 0.21 tolerated(0.2) possibly_damaging(0.709) TCGA-NJ-A4YQ-01 12 34178815 34178815 G T ALG10 Missense_Mutation p.Q129H 0.15 deleterious(0.02) benign(0.196) TCGA-NJ-A4YQ-01 12 41967632 41967632 G T PDZRN4 Silent p.G1017G 0.09 TCGA-NJ-A4YQ-01 12 43828102 43828102 T C ADAMTS20 Missense_Mutation p.H889R 0.33 tolerated(0.69) benign(0.045) TCGA-NJ-A4YQ-01 12 4479626 4479626 G A FGF23 Silent p.A213A 0.16 TCGA-NJ-A4YQ-01 12 4705767 4705767 G T DYRK4 Missense_Mutation p.Q144H 0.16 deleterious(0) probably_damaging(0.993) TCGA-NJ-A4YQ-01 12 48367170 48367170 T - COL2A1 3'UTR 0.15 TCGA-NJ-A4YQ-01 12 4870123 4870123 G C GALNT8 Splice_Site p.X392_splice 0.23 TCGA-NJ-A4YQ-01 12 48921775 48921775 C A OR8S1 Silent p.T323T 0.10 TCGA-NJ-A4YQ-01 12 49438257 49438257 C A KMT2D Missense_Mutation p.S1671I 0.15 probably_damaging(0.93) TCGA-NJ-A4YQ-01 12 50186268 50186268 G C NCKAP5L Missense_Mutation p.C1251W 0.12 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 12 51717814 51717814 G A BIN2 Nonsense_Mutation p.Q25* 0.22 TCGA-NJ-A4YQ-01 12 51717879 51717879 T A BIN2 Missense_Mutation p.E3V 0.22 deleterious(0) unknown(0) TCGA-NJ-A4YQ-01 12 52635404 52635404 C T KRT7 Missense_Mutation p.A281V 0.17 deleterious(0.01) possibly_damaging(0.676) TCGA-NJ-A4YQ-01 12 52714815 52714815 G A KRT83 Missense_Mutation p.P102L 0.15 deleterious(0) possibly_damaging(0.847) TCGA-NJ-A4YQ-01 12 52884514 52884514 G T KRT6A Missense_Mutation p.L306M 0.16 deleterious(0.02) probably_damaging(0.934) TCGA-NJ-A4YQ-01 12 52886734 52886734 C A KRT6A Missense_Mutation p.S80I 0.15 tolerated(0.14) unknown(0) TCGA-NJ-A4YQ-01 12 53216829 53216829 G T KRT79 Nonsense_Mutation p.Y446* 0.11 TCGA-NJ-A4YQ-01 12 55615645 55615645 T A OR10A7 Silent p.T279T 0.10 TCGA-NJ-A4YQ-01 12 57858581 57858581 G T GLI1 Missense_Mutation p.V107L 0.14 deleterious(0) benign(0.037) TCGA-NJ-A4YQ-01 12 57883715 57883716 - C MARS Frame_Shift_Ins p.L152Pfs*13 0.12 TCGA-NJ-A4YQ-01 12 64173835 64173835 G C TMEM5 Missense_Mutation p.R32P 0.29 tolerated(0.17) benign(0.018) TCGA-NJ-A4YQ-01 12 6657972 6657972 C T IFFO1 Missense_Mutation p.R367Q 0.23 deleterious(0.02) possibly_damaging(0.897) TCGA-NJ-A4YQ-01 12 68646305 68646305 G T IL22 Silent p.L125L 0.12 TCGA-NJ-A4YQ-01 12 68708775 68708775 C G MDM1 Missense_Mutation p.E484D 0.06 tolerated(0.12) benign(0.073) TCGA-NJ-A4YQ-01 12 71002892 71002892 C A PTPRB Missense_Mutation p.R312S 0.05 tolerated(0.06) benign(0.062) TCGA-NJ-A4YQ-01 12 71016204 71016204 G A PTPRB Missense_Mutation p.S225L 0.10 tolerated_low_confidence(0.19) benign(0.001) TCGA-NJ-A4YQ-01 12 72094877 72094877 C T TMEM19 3'UTR 0.09 TCGA-NJ-A4YQ-01 12 72863661 72863661 C - TRHDE Frame_Shift_Del p.M436Wfs*16 0.15 TCGA-NJ-A4YQ-01 12 81111042 81111042 G T MYF5 Missense_Mutation p.C67F 0.18 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 12 81112822 81112822 G A MYF5 Missense_Mutation p.V254M 0.15 deleterious(0) possibly_damaging(0.903) TCGA-NJ-A4YQ-01 12 81283137 81283137 C A LIN7A Missense_Mutation p.A32S 0.22 tolerated(0.1) benign(0.031) TCGA-NJ-A4YQ-01 12 8197366 8197366 C A FOXJ2 Missense_Mutation p.S210Y 0.19 deleterious(0.04) benign(0.259) TCGA-NJ-A4YQ-01 12 88548084 88548084 G T TMTC3 Missense_Mutation p.R143I 0.05 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 12 93881410 93881410 T C MRPL42 Silent p.T119T 0.13 TCGA-NJ-A4YQ-01 12 980429 980429 A T WNK1 Splice_Site p.X714_splice 0.11 TCGA-NJ-A4YQ-01 12 99008049 99008049 G T IKBIP Missense_Mutation p.Q123K 0.13 tolerated(0.14) benign(0.197) TCGA-NJ-A4YQ-01 13 113771153 113771153 G A F7 Silent p.G215G 0.15 TCGA-NJ-A4YQ-01 13 114514732 114514732 G A TMEM255B Silent p.A279A 0.14 TCGA-NJ-A4YQ-01 13 21565414 21565414 G A LATS2 Missense_Mutation p.P158S 0.11 tolerated_low_confidence(0.06) benign(0.099) TCGA-NJ-A4YQ-01 13 26273433 26273433 G A ATP8A2 Silent p.R778R 0.13 TCGA-NJ-A4YQ-01 13 27257051 27257051 G T WASF3 Nonsense_Mutation p.E431* 0.13 TCGA-NJ-A4YQ-01 13 28644627 28644627 C A FLT3 Splice_Site p.X55_splice 0.14 TCGA-NJ-A4YQ-01 13 36903531 36903531 C A SPG20 Missense_Mutation p.D378Y 0.15 deleterious(0.01) benign(0.235) TCGA-NJ-A4YQ-01 13 38237681 38237681 T C TRPC4 Silent p.L520L 0.24 TCGA-NJ-A4YQ-01 13 46726970 46726970 C A LCP1 Silent p.L228L 0.16 TCGA-NJ-A4YQ-01 13 52035424 52035424 A G RPS4XP16 RNA 0.07 TCGA-NJ-A4YQ-01 13 52508992 52508992 A C ATP7B Missense_Mutation p.L1433R 0.10 deleterious(0.01) probably_damaging(0.987) TCGA-NJ-A4YQ-01 13 73482668 73482668 G T PIBF1 Splice_Site p.X497_splice 0.18 TCGA-NJ-A4YQ-01 13 73482669 73482669 G T PIBF1 Missense_Mutation p.V497F 0.18 deleterious(0) probably_damaging(0.997) TCGA-NJ-A4YQ-01 13 77759467 77759467 C T MYCBP2 Missense_Mutation p.C1459Y 0.09 possibly_damaging(0.899) TCGA-NJ-A4YQ-01 13 78492531 78492531 C A EDNRB Missense_Mutation p.A150S 0.22 tolerated(0.51) benign(0.01) TCGA-NJ-A4YQ-01 13 84455166 84455166 G T SLITRK1 Silent p.L159L 0.15 TCGA-NJ-A4YQ-01 13 98829158 98829158 G T RNF113B Silent p.T111T 0.13 TCGA-NJ-A4YQ-01 14 101200982 101200982 G T DLK1 Nonsense_Mutation p.E301* 0.09 TCGA-NJ-A4YQ-01 14 101488423 101488423 C G MIR379 RNA 0.11 TCGA-NJ-A4YQ-01 14 101514284 101514284 G T MIR889 RNA 0.10 TCGA-NJ-A4YQ-01 14 101514288 101514288 A T MIR889 RNA 0.10 TCGA-NJ-A4YQ-01 14 101531846 101531846 G T MIR412 RNA 0.07 TCGA-NJ-A4YQ-01 14 102910132 102910132 G T TECPR2 Silent p.P967P 0.08 TCGA-NJ-A4YQ-01 14 103934452 103934452 G A MARK3 Missense_Mutation p.G398D 0.18 tolerated(0.39) possibly_damaging(0.721) TCGA-NJ-A4YQ-01 14 105416830 105416830 G T AHNAK2 Missense_Mutation p.A1653D 0.10 probably_damaging(0.923) TCGA-NJ-A4YQ-01 14 107095142 107095142 A G IGHV4-61 Missense_Mutation p.V113A 0.06 deleterious(0.02) benign(0.261) TCGA-NJ-A4YQ-01 14 107095181 107095181 G C IGHV4-61 Missense_Mutation p.S100C 0.11 deleterious(0) probably_damaging(0.949) TCGA-NJ-A4YQ-01 14 20215915 20215915 C G OR4Q3 Missense_Mutation p.A110G 0.11 tolerated(1) benign(0.001) TCGA-NJ-A4YQ-01 14 20296046 20296046 G A OR4N2 Missense_Mutation p.A147T 0.08 tolerated(0.08) benign(0.046) TCGA-NJ-A4YQ-01 14 20404366 20404366 C A OR4K1 Missense_Mutation p.L181I 0.07 tolerated(0.1) probably_damaging(0.999) TCGA-NJ-A4YQ-01 14 20404500 20404500 C A OR4K1 Silent p.V225V 0.05 TCGA-NJ-A4YQ-01 14 20444618 20444618 G T OR4K15 Missense_Mutation p.R314I 0.09 deleterious(0) probably_damaging(0.987) TCGA-NJ-A4YQ-01 14 20502645 20502645 G T OR4K13 Silent p.T91T 0.16 TCGA-NJ-A4YQ-01 14 20528620 20528620 G T OR4L1 Missense_Mutation p.K139N 0.13 deleterious(0.05) benign(0.063) TCGA-NJ-A4YQ-01 14 20665761 20665761 G T OR11G2 Missense_Mutation p.W89C 0.12 tolerated(0.15) benign(0.005) TCGA-NJ-A4YQ-01 14 20692355 20692355 G T OR11H6 Missense_Mutation p.V163F 0.18 deleterious(0) possibly_damaging(0.795) TCGA-NJ-A4YQ-01 14 21052373 21052373 C A RNASE11 Missense_Mutation p.K87N 0.15 deleterious(0.01) possibly_damaging(0.882) TCGA-NJ-A4YQ-01 14 21561118 21561118 C A ZNF219 Missense_Mutation p.R113L 0.10 tolerated(0.19) probably_damaging(0.953) TCGA-NJ-A4YQ-01 14 21793437 21793437 G C RPGRIP1 Silent p.L754L 0.10 TCGA-NJ-A4YQ-01 14 21860930 21860930 C A CHD8 Missense_Mutation p.Q2169H 0.08 tolerated(0.48) benign(0.216) TCGA-NJ-A4YQ-01 14 22466256 22466256 C A TRAV17 Silent p.G62G 0.14 TCGA-NJ-A4YQ-01 14 22580406 22580406 T C TRAV25 Missense_Mutation p.W11R 0.18 deleterious(0) probably_damaging(0.917) TCGA-NJ-A4YQ-01 14 23524511 23524511 C A CDH24 Missense_Mutation p.G85W 0.17 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 14 23549553 23549553 G A ACIN1 Missense_Mutation p.P389S 0.16 possibly_damaging(0.677) TCGA-NJ-A4YQ-01 14 23872002 23872002 C T MYH6 Silent p.L302L 0.12 TCGA-NJ-A4YQ-01 14 24026169 24026169 G T THTPA Missense_Mutation p.G68V 0.17 tolerated(0.19) probably_damaging(0.961) TCGA-NJ-A4YQ-01 14 24808683 24808683 C A RIPK3 Silent p.V47V 0.09 TCGA-NJ-A4YQ-01 14 24877553 24877553 A T NYNRIN Missense_Mutation p.Q226L 0.16 tolerated_low_confidence(0.23) benign(0.002) TCGA-NJ-A4YQ-01 14 32328399 32328399 C T NUBPL 3'UTR 0.15 TCGA-NJ-A4YQ-01 14 34269178 34269178 C A NPAS3 Silent p.I555I 0.10 TCGA-NJ-A4YQ-01 14 35331515 35331515 G C BAZ1A Missense_Mutation p.R43G 0.13 deleterious(0) possibly_damaging(0.569) TCGA-NJ-A4YQ-01 14 36004579 36004579 G A INSM2 Missense_Mutation p.G374E 0.11 tolerated(0.52) benign(0.202) TCGA-NJ-A4YQ-01 14 36789865 36789865 G A MBIP 5'UTR 0.22 TCGA-NJ-A4YQ-01 14 39772720 39772720 G A CTAGE5 Missense_Mutation p.A324T 0.12 deleterious(0.02) benign(0.331) TCGA-NJ-A4YQ-01 14 50605379 50605379 T A SOS2 Missense_Mutation p.Q970L 0.15 deleterious(0.02) probably_damaging(0.997) TCGA-NJ-A4YQ-01 14 54976601 54976601 G T CGRRF1 5'UTR 0.19 TCGA-NJ-A4YQ-01 14 55236906 55236906 C A SAMD4A Missense_Mutation p.L561I 0.17 tolerated(0.17) benign(0.015) TCGA-NJ-A4YQ-01 14 62463160 62463160 G T SYT16 Silent p.A141A 0.15 TCGA-NJ-A4YQ-01 14 64604632 64604632 G T SYNE2 Missense_Mutation p.W4925L 0.12 probably_damaging(0.917) TCGA-NJ-A4YQ-01 14 64998641 64998641 G A RP11-973N13.4 Intron 0.23 TCGA-NJ-A4YQ-01 14 70634049 70634049 C A SLC8A3 Missense_Mutation p.G364V 0.15 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 14 76198730 76198730 G T TTLL5 Missense_Mutation p.L364F 0.18 deleterious(0) probably_damaging(0.949) TCGA-NJ-A4YQ-01 14 76452127 76452127 G T IFT43 5'UTR 0.14 TCGA-NJ-A4YQ-01 14 81558909 81558909 C T TSHR Missense_Mutation p.P168S 0.06 deleterious(0.01) possibly_damaging(0.86) TCGA-NJ-A4YQ-01 14 81743497 81743497 G A STON2 Missense_Mutation p.L720F 0.08 tolerated(0.1) probably_damaging(0.998) TCGA-NJ-A4YQ-01 14 86088162 86088162 G T FLRT2 Nonsense_Mutation p.E102* 0.09 TCGA-NJ-A4YQ-01 14 89038457 89038457 G T ZC3H14 Nonsense_Mutation p.E107* 0.10 TCGA-NJ-A4YQ-01 14 90509430 90509430 G C TDP1 Missense_Mutation p.W590C 0.07 deleterious(0) probably_damaging(0.993) TCGA-NJ-A4YQ-01 14 90651263 90651263 G T KCNK13 Silent p.L381L 0.11 TCGA-NJ-A4YQ-01 14 94067037 94067037 C A UNC79 Missense_Mutation p.F988L 0.15 deleterious(0.01) probably_damaging(0.99) TCGA-NJ-A4YQ-01 14 94088734 94088734 G T UNC79 Missense_Mutation p.D1542Y 0.13 deleterious_low_confidence(0.01) benign(0.126) TCGA-NJ-A4YQ-01 14 94770832 94770832 G T SERPINA6 Missense_Mutation p.Q381K 0.09 tolerated(0.25) benign(0.008) TCGA-NJ-A4YQ-01 14 94909495 94909495 G T SERPINA11 Missense_Mutation p.Q329K 0.08 tolerated(1) benign(0.001) TCGA-NJ-A4YQ-01 14 95090332 95090332 T A SERPINA3 3'UTR 0.38 TCGA-NJ-A4YQ-01 14 99865278 99865278 C A SETD3 Missense_Mutation p.G508V 0.06 deleterious(0.03) probably_damaging(0.953) TCGA-NJ-A4YQ-01 15 20495363 20495363 C A CHEK2P2 Intron 0.08 TCGA-NJ-A4YQ-01 15 20876546 20876546 C A NBEAP1 RNA 0.09 TCGA-NJ-A4YQ-01 15 22709206 22709206 G T AC116165.1 5'Flank 0.06 TCGA-NJ-A4YQ-01 15 22925788 22925788 G - CYFIP1 Frame_Shift_Del p.A3Pfs*3 0.18 TCGA-NJ-A4YQ-01 15 25331761 25331761 G A SNORD116-19 RNA 0.13 TCGA-NJ-A4YQ-01 15 25425501 25425501 G T SNORD115-6 5'Flank 0.13 TCGA-NJ-A4YQ-01 15 25451254 25451254 C A SNORD115-22 5'Flank 0.17 TCGA-NJ-A4YQ-01 15 25458680 25458680 C A SNORD115-22 3'Flank 0.19 TCGA-NJ-A4YQ-01 15 25463835 25463835 C T SNORD115-27 5'Flank 0.16 TCGA-NJ-A4YQ-01 15 25953156 25953156 C T ATP10A Missense_Mutation p.A848T 0.13 deleterious(0.01) benign(0.377) TCGA-NJ-A4YQ-01 15 27572176 27572176 G T GABRG3 Missense_Mutation p.R164M 0.09 deleterious(0) probably_damaging(0.911) TCGA-NJ-A4YQ-01 15 28273019 28273019 C A OCA2 Silent p.L171L 0.07 TCGA-NJ-A4YQ-01 15 29406162 29406162 C A APBA2 Missense_Mutation p.S707R 0.12 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 15 31776742 31776742 G C OTUD7A Silent p.S512S 0.17 TCGA-NJ-A4YQ-01 15 31776743 31776743 G T OTUD7A Missense_Mutation p.S512Y 0.17 deleterious(0) probably_damaging(0.993) TCGA-NJ-A4YQ-01 15 32929861 32929861 G T ARHGAP11A Missense_Mutation p.D963Y 0.14 deleterious(0) probably_damaging(0.968) TCGA-NJ-A4YQ-01 15 33261646 33261646 C A FMN1 Silent p.R529R 0.17 TCGA-NJ-A4YQ-01 15 33357257 33357257 C A FMN1 Nonsense_Mutation p.E465* 0.14 TCGA-NJ-A4YQ-01 15 33954398 33954398 G T RYR3 Missense_Mutation p.R1556L 0.24 benign(0.006) TCGA-NJ-A4YQ-01 15 34028461 34028461 C A RYR3 Missense_Mutation p.Q2484K 0.14 benign(0.066) TCGA-NJ-A4YQ-01 15 34355426 34355426 C A CHRM5 Missense_Mutation p.Q170K 0.18 deleterious(0) possibly_damaging(0.866) TCGA-NJ-A4YQ-01 15 37188828 37188828 C A MEIS2 Splice_Site p.X346_splice 0.11 TCGA-NJ-A4YQ-01 15 41067249 41067249 G A DNAJC17 Missense_Mutation p.L194F 0.17 deleterious(0) probably_damaging(0.996) TCGA-NJ-A4YQ-01 15 42170695 42170695 C A SPTBN5 Missense_Mutation p.Q1105H 0.11 benign(0.029) TCGA-NJ-A4YQ-01 15 43903143 43903143 C G STRC Missense_Mutation p.G1116R 0.08 tolerated(0.45) possibly_damaging(0.682) TCGA-NJ-A4YQ-01 15 45453956 45453956 C A DUOX1 Missense_Mutation p.Q1293K 0.15 tolerated(0.92) benign(0.015) TCGA-NJ-A4YQ-01 15 45695586 45695586 G T SPATA5L1 Missense_Mutation p.R320L 0.07 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 15 48458325 48458325 C A MYEF2 Missense_Mutation p.G142C 0.12 deleterious(0) probably_damaging(0.992) TCGA-NJ-A4YQ-01 15 50546732 50546732 C A HDC Missense_Mutation p.D191Y 0.20 deleterious(0) probably_damaging(0.996) TCGA-NJ-A4YQ-01 15 54914577 54914577 T G UNC13C Silent p.T2053T 0.11 TCGA-NJ-A4YQ-01 15 56032796 56032796 G T PRTG Missense_Mutation p.Q61K 0.11 tolerated(0.05) benign(0.403) TCGA-NJ-A4YQ-01 15 57743763 57743763 G A CGNL1 Silent p.V623V 0.15 TCGA-NJ-A4YQ-01 15 59172239 59172239 C A SLTM Nonsense_Mutation p.G1022* 0.09 TCGA-NJ-A4YQ-01 15 62205614 62205614 C A VPS13C Missense_Mutation p.V2816L 0.12 tolerated(0.14) benign(0.013) TCGA-NJ-A4YQ-01 15 63618539 63618539 T G CA12 Missense_Mutation p.N337T 0.16 deleterious(0.01) possibly_damaging(0.493) TCGA-NJ-A4YQ-01 15 64966341 64966341 G T ZNF609 Missense_Mutation p.V430F 0.11 deleterious(0) possibly_damaging(0.771) TCGA-NJ-A4YQ-01 15 65054585 65054585 C A RBPMS2 Intron 0.13 TCGA-NJ-A4YQ-01 15 65686837 65686837 G A IGDCC4 Silent p.D542D 0.15 TCGA-NJ-A4YQ-01 15 72172852 72172852 C A MYO9A Missense_Mutation p.G1816C 0.08 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 15 72189610 72189610 C A MYO9A Intron 0.20 TCGA-NJ-A4YQ-01 15 73615880 73615881 GT - HCN4 Frame_Shift_Del p.P852Vfs*119 0.27 TCGA-NJ-A4YQ-01 15 74468090 74468090 G T ISLR Silent p.V297V 0.11 TCGA-NJ-A4YQ-01 15 74473699 74473699 C A STRA6 Missense_Mutation p.A580S 0.18 tolerated(0.15) benign(0.214) TCGA-NJ-A4YQ-01 15 77407136 77407136 C A PEAK1 Missense_Mutation p.G1535C 0.12 tolerated(0.05) benign(0.009) TCGA-NJ-A4YQ-01 15 81173419 81173419 C A KIAA1199 Missense_Mutation p.R187S 0.12 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 15 81440790 81440790 C A C15orf26 Silent p.A274A 0.17 TCGA-NJ-A4YQ-01 15 81517752 81517752 C A IL16 Missense_Mutation p.H4Q 0.15 tolerated(0.12) benign(0.031) TCGA-NJ-A4YQ-01 15 81592487 81592487 G T IL16 Silent p.P940P 0.15 TCGA-NJ-A4YQ-01 15 83735784 83735784 C A BTBD1 Silent p.L40L 0.21 TCGA-NJ-A4YQ-01 15 83932667 83932667 T A BNC1 Missense_Mutation p.T446S 0.06 tolerated(0.46) benign(0.002) TCGA-NJ-A4YQ-01 15 84237387 84237387 G C SH3GL3 Silent p.L98L 0.12 TCGA-NJ-A4YQ-01 15 85411584 85411584 C T ALPK3 Missense_Mutation p.P1874L 0.16 tolerated(0.09) benign(0.005) TCGA-NJ-A4YQ-01 15 88472283 88472283 G T NTRK3 Intron 0.16 TCGA-NJ-A4YQ-01 15 89079562 89079562 C G DET1 Missense_Mutation p.V2L 0.16 tolerated_low_confidence(0.6) benign(0.097) TCGA-NJ-A4YQ-01 15 89079563 89079563 C A DET1 Translation_Start_Site p.M1? 0.17 deleterious_low_confidence(0) benign(0) TCGA-NJ-A4YQ-01 15 89833462 89833462 C T FANCI Nonsense_Mutation p.R614* 0.15 TCGA-NJ-A4YQ-01 15 90785111 90785111 A T GDPGP1 Missense_Mutation p.D324V 0.28 deleterious(0) benign(0.433) TCGA-NJ-A4YQ-01 16 1470233 1470233 C A C16orf91 Intron 0.11 TCGA-NJ-A4YQ-01 16 1706025 1706025 A G CRAMP1L Missense_Mutation p.T423A 0.23 deleterious(0) probably_damaging(0.997) TCGA-NJ-A4YQ-01 16 1798333 1798333 C T MAPK8IP3 Silent p.D360D 0.21 TCGA-NJ-A4YQ-01 16 18866197 18866197 T A SMG1 Missense_Mutation p.M1422L 0.13 tolerated(1) benign(0.001) TCGA-NJ-A4YQ-01 16 19547731 19547731 G T CCP110 Missense_Mutation p.S247I 0.17 deleterious(0) benign(0.361) TCGA-NJ-A4YQ-01 16 20432663 20432663 C - ACSM5 Frame_Shift_Del p.K238Rfs*24 0.10 TCGA-NJ-A4YQ-01 16 20489932 20489932 G C ACSM2A Missense_Mutation p.G405A 0.11 deleterious(0) possibly_damaging(0.648) TCGA-NJ-A4YQ-01 16 20693591 20693591 G T ACSM1 Silent p.R200R 0.14 TCGA-NJ-A4YQ-01 16 20838468 20838468 G C AC004381.6 Missense_Mutation p.D304H 0.11 deleterious(0) probably_damaging(0.943) TCGA-NJ-A4YQ-01 16 21995933 21995933 A C PDZD9 Missense_Mutation p.S90R 0.12 tolerated(0.09) benign(0.126) TCGA-NJ-A4YQ-01 16 23388520 23388520 G T SCNN1B Silent p.A435A 0.12 TCGA-NJ-A4YQ-01 16 23404669 23404669 C A COG7 Splice_Site p.X630_splice 0.14 TCGA-NJ-A4YQ-01 16 27459864 27459864 G T IL21R Missense_Mutation p.G293C 0.12 deleterious(0) probably_damaging(0.971) TCGA-NJ-A4YQ-01 16 27499898 27499898 C A GTF3C1 Missense_Mutation p.R1163L 0.13 deleterious(0.01) benign(0.324) TCGA-NJ-A4YQ-01 16 2811927 2811927 A T SRRM2 Silent p.R466R 0.12 TCGA-NJ-A4YQ-01 16 28468325 28468325 T C NPIPB7 Missense_Mutation p.H222R 0.15 deleterious_low_confidence(0) possibly_damaging(0.854) TCGA-NJ-A4YQ-01 16 28948839 28948839 C A CD19 Missense_Mutation p.S456Y 0.09 deleterious(0) probably_damaging(0.983) TCGA-NJ-A4YQ-01 16 30490510 30490510 G T ITGAL Missense_Mutation p.Q142H 0.12 deleterious(0.04) benign(0.119) TCGA-NJ-A4YQ-01 16 31160810 31160810 G T PRSS36 Missense_Mutation p.P28H 0.12 deleterious(0.01) possibly_damaging(0.778) TCGA-NJ-A4YQ-01 16 31371783 31371783 G T ITGAX Missense_Mutation p.G287V 0.14 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 16 3140367 3140367 G T ZSCAN10 Missense_Mutation p.F301L 0.10 tolerated(0.05) probably_damaging(0.998) TCGA-NJ-A4YQ-01 16 31471244 31471244 C T ARMC5 Silent p.L133L 0.14 TCGA-NJ-A4YQ-01 16 33647408 33647408 C A RP11-812E19.9 Silent p.L64L 0.14 TCGA-NJ-A4YQ-01 16 3565567 3565567 G T CLUAP1 Missense_Mutation p.M185I 0.10 tolerated(0.29) benign(0.006) TCGA-NJ-A4YQ-01 16 419158 419158 C T MRPL28 Silent p.E117E 0.19 TCGA-NJ-A4YQ-01 16 47189631 47189631 C A ITFG1 Nonstop_Mutation p.*613Lext*7 0.12 TCGA-NJ-A4YQ-01 16 48580110 48580110 C A N4BP1 Nonsense_Mutation p.G761* 0.12 TCGA-NJ-A4YQ-01 16 49669670 49669670 A T ZNF423 Missense_Mutation p.S1131R 0.08 deleterious(0.02) benign(0.061) TCGA-NJ-A4YQ-01 16 49670389 49670389 C G ZNF423 Missense_Mutation p.G892R 0.14 deleterious(0) probably_damaging(0.973) TCGA-NJ-A4YQ-01 16 5042018 5042018 G T SEC14L5 Silent p.A218A 0.23 TCGA-NJ-A4YQ-01 16 53726226 53726226 C A RPGRIP1L Missense_Mutation p.R94L 0.07 tolerated(0.07) benign(0.051) TCGA-NJ-A4YQ-01 16 55895369 55895369 C A CES5A Missense_Mutation p.R319S 0.15 tolerated(0.47) benign(0.253) TCGA-NJ-A4YQ-01 16 57485061 57485061 G T COQ9 Missense_Mutation p.Q61H 0.10 tolerated(0.19) benign(0.003) TCGA-NJ-A4YQ-01 16 61935146 61935147 - A CDH8 Frame_Shift_Ins p.D162* 0.08 TCGA-NJ-A4YQ-01 16 65345347 65345347 C G LINC00922 RNA 0.08 TCGA-NJ-A4YQ-01 16 66950328 66950328 G A CDH16 Missense_Mutation p.P45L 0.09 tolerated(0.35) benign(0.001) TCGA-NJ-A4YQ-01 16 67222801 67222801 A C EXOC3L1 Missense_Mutation p.W84G 0.10 tolerated(0.13) benign(0.001) TCGA-NJ-A4YQ-01 16 67762377 67762377 T G RANBP10 Missense_Mutation p.N464H 0.21 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 16 67861863 67861863 T A TSNAXIP1 Silent p.R648R 0.05 TCGA-NJ-A4YQ-01 16 68026487 68026487 C A DPEP2 Missense_Mutation p.D106Y 0.12 deleterious(0) possibly_damaging(0.901) TCGA-NJ-A4YQ-01 16 70531930 70531930 G C COG4 Silent p.L408L 0.11 TCGA-NJ-A4YQ-01 16 70917956 70917956 G T HYDIN Silent p.V3282V 0.15 TCGA-NJ-A4YQ-01 16 71061515 71061515 G C HYDIN Missense_Mutation p.A1011G 0.08 possibly_damaging(0.452) TCGA-NJ-A4YQ-01 16 7383081 7383081 C A RBFOX1 Missense_Mutation p.L27M 0.12 deleterious_low_confidence(0.05) possibly_damaging(0.554) TCGA-NJ-A4YQ-01 16 74447481 74447481 G A CLEC18B Missense_Mutation p.P184S 0.05 deleterious(0.02) probably_damaging(0.959) TCGA-NJ-A4YQ-01 16 7645557 7645557 G T RBFOX1 Missense_Mutation p.G179C 0.16 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 16 76486533 76486533 T A CNTNAP4 Silent p.T327T 0.13 TCGA-NJ-A4YQ-01 16 76569473 76569473 G T CNTNAP4 Silent p.L856L 0.09 TCGA-NJ-A4YQ-01 16 76569546 76569546 G C CNTNAP4 Missense_Mutation p.V881L 0.08 deleterious(0) possibly_damaging(0.486) TCGA-NJ-A4YQ-01 16 77918547 77918547 G A VAT1L Missense_Mutation p.E309K 0.19 tolerated(0.16) probably_damaging(0.993) TCGA-NJ-A4YQ-01 16 87743097 87743097 C A KLHDC4 Silent p.S407S 0.10 TCGA-NJ-A4YQ-01 16 8870254 8870254 G T ABAT Silent p.L392L 0.12 TCGA-NJ-A4YQ-01 17 10317596 10317596 G T MYH8 Silent p.T307T 0.10 TCGA-NJ-A4YQ-01 17 10317597 10317597 G T MYH8 Missense_Mutation p.T307N 0.10 deleterious(0) probably_damaging(0.92) TCGA-NJ-A4YQ-01 17 16455578 16455578 C - ZNF287 Frame_Shift_Del p.A628Hfs*137 0.12 TCGA-NJ-A4YQ-01 17 16527375 16527375 G A ZNF624 Silent p.P275P 0.19 TCGA-NJ-A4YQ-01 17 17997259 17997259 C T DRG2 Missense_Mutation p.A66V 0.11 tolerated(0.17) benign(0.171) TCGA-NJ-A4YQ-01 17 18023380 18023380 C G MYO15A Missense_Mutation p.H422Q 0.16 benign(0.227) TCGA-NJ-A4YQ-01 17 18566103 18566103 T C ZNF286B Missense_Mutation p.K239R 0.13 tolerated(0.48) benign(0.357) TCGA-NJ-A4YQ-01 17 32964202 32964202 C A TMEM132E Missense_Mutation p.L636I 0.10 tolerated(0.64) possibly_damaging(0.676) TCGA-NJ-A4YQ-01 17 33255006 33255006 T C CCT6B 3'UTR 0.08 TCGA-NJ-A4YQ-01 17 33495266 33495266 C G UNC45B Missense_Mutation p.I446M 0.21 deleterious(0) probably_damaging(0.91) TCGA-NJ-A4YQ-01 17 33513327 33513327 T A UNC45B Missense_Mutation p.W849R 0.08 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 17 34072770 34072770 C T GAS2L2 Silent p.E582E 0.11 TCGA-NJ-A4YQ-01 17 35487103 35487103 C A ACACA Silent p.G1907G 0.06 TCGA-NJ-A4YQ-01 17 36486912 36486912 C T GPR179 Missense_Mutation p.R847K 0.10 tolerated(0.26) benign(0.046) TCGA-NJ-A4YQ-01 17 36963205 36963205 C G CWC25 Missense_Mutation p.G239R 0.08 tolerated(0.85) benign(0.001) TCGA-NJ-A4YQ-01 17 36971335 36971335 C A CWC25 Missense_Mutation p.K69N 0.10 deleterious(0) probably_damaging(0.994) TCGA-NJ-A4YQ-01 17 37898958 37898958 A T GRB7 Missense_Mutation p.S122C 0.15 deleterious(0.05) probably_damaging(0.957) TCGA-NJ-A4YQ-01 17 3851119 3851119 C T ATP2A3 Missense_Mutation p.G221S 0.12 tolerated(0.07) probably_damaging(1) TCGA-NJ-A4YQ-01 17 39019768 39019768 A T KRT12 Missense_Mutation p.L355Q 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-NJ-A4YQ-01 17 39739859 39739859 C T KRT14 Missense_Mutation p.E333K 0.15 deleterious(0.02) probably_damaging(0.981) TCGA-NJ-A4YQ-01 17 40269976 40269976 C A KAT2A Missense_Mutation p.G414C 0.09 tolerated(0.06) benign(0.014) TCGA-NJ-A4YQ-01 17 40765028 40765028 G - TUBG1 Frame_Shift_Del p.V182Wfs*14 0.10 TCGA-NJ-A4YQ-01 17 40831515 40831515 C A CCR10 3'UTR 0.14 TCGA-NJ-A4YQ-01 17 41258541 41258541 C G BRCA1 Missense_Mutation p.M48I 0.12 deleterious(0) benign(0.019) TCGA-NJ-A4YQ-01 17 41590792 41590792 G T DHX8 Silent p.V855V 0.13 TCGA-NJ-A4YQ-01 17 42330543 42330543 G A SLC4A1 Nonsense_Mutation p.Q752* 0.14 TCGA-NJ-A4YQ-01 17 42338118 42338118 C A SLC4A1 Silent p.A78A 0.11 TCGA-NJ-A4YQ-01 17 43111635 43111635 C A DCAKD Missense_Mutation p.R79L 0.15 tolerated(0.21) benign(0.004) TCGA-NJ-A4YQ-01 17 46620951 46620951 C G HOXB2 Missense_Mutation p.E184Q 0.17 deleterious(0) probably_damaging(0.95) TCGA-NJ-A4YQ-01 17 46700214 46700214 G C HOXB9 3'UTR 0.30 TCGA-NJ-A4YQ-01 17 46804379 46804379 C A HOXB13 Missense_Mutation p.A210S 0.08 tolerated(0.76) benign(0) TCGA-NJ-A4YQ-01 17 47782569 47782569 C A SLC35B1 Missense_Mutation p.A149S 0.13 tolerated(0.28) benign(0.009) TCGA-NJ-A4YQ-01 17 48777210 48777210 G - ANKRD40 Frame_Shift_Del p.Q110Sfs*2 0.25 TCGA-NJ-A4YQ-01 17 49198014 49198014 C A SPAG9 Nonsense_Mutation p.E2* 0.33 TCGA-NJ-A4YQ-01 17 5250193 5250193 G T RABEP1 Nonsense_Mutation p.E253* 0.14 TCGA-NJ-A4YQ-01 17 56247381 56247381 G T OR4D2 Missense_Mutation p.R122L 0.22 deleterious(0.01) possibly_damaging(0.547) TCGA-NJ-A4YQ-01 17 56620084 56620084 T C C17orf47 Silent p.P488P 0.12 TCGA-NJ-A4YQ-01 17 56620085 56620085 G T C17orf47 Missense_Mutation p.P488Q 0.11 deleterious(0) probably_damaging(0.972) TCGA-NJ-A4YQ-01 17 58512726 58512726 G T C17orf64 3'Flank 0.24 TCGA-NJ-A4YQ-01 17 61566417 61566417 C A ACE Nonsense_Mutation p.Y855* 0.24 TCGA-NJ-A4YQ-01 17 61904229 61904229 G T FTSJ3 Silent p.R12R 0.24 TCGA-NJ-A4YQ-01 17 62499186 62499186 T A DDX5 Missense_Mutation p.T281S 0.14 deleterious(0) probably_damaging(0.996) TCGA-NJ-A4YQ-01 17 65850086 65850086 G A BPTF Missense_Mutation p.R215H 0.14 possibly_damaging(0.476) TCGA-NJ-A4YQ-01 17 70119772 70119772 C A SOX9 Silent p.P258P 0.27 TCGA-NJ-A4YQ-01 17 71166526 71166526 C A SSTR2 Silent p.T356T 0.10 TCGA-NJ-A4YQ-01 17 71410816 71410817 GG T SDK2 Frame_Shift_Del p.P817Hfs*13 0.22 TCGA-NJ-A4YQ-01 17 7324689 7324689 C T SPEM1 Missense_Mutation p.A232V 0.23 tolerated(0.23) benign(0.001) TCGA-NJ-A4YQ-01 17 74765851 74765851 G T MFSD11 Missense_Mutation p.G258C 0.21 deleterious(0) probably_damaging(0.992) TCGA-NJ-A4YQ-01 17 75398444 75398444 C T SEPT9 Missense_Mutation p.P127L 0.23 tolerated_low_confidence(0.76) benign(0.004) TCGA-NJ-A4YQ-01 17 76967590 76967590 G A LGALS3BP 3'UTR 0.30 TCGA-NJ-A4YQ-01 17 78071180 78071180 G T CCDC40 Missense_Mutation p.R1053L 0.17 tolerated(0.51) benign(0.382) TCGA-NJ-A4YQ-01 17 78262066 78262066 C T RNF213 Silent p.A238A 0.11 TCGA-NJ-A4YQ-01 17 78319153 78319153 G T RNF213 Missense_Mutation p.V2340F 0.11 probably_damaging(0.965) TCGA-NJ-A4YQ-01 17 79278868 79278868 C T LINC00482 RNA 0.20 TCGA-NJ-A4YQ-01 17 79427988 79427988 C T RP11-1055B8.7 Missense_Mutation p.A2100V 0.17 possibly_damaging(0.454) TCGA-NJ-A4YQ-01 17 80320602 80320602 C A TEX19 3'UTR 0.10 TCGA-NJ-A4YQ-01 17 80789901 80789901 C A ZNF750 Nonsense_Mutation p.E144* 0.26 TCGA-NJ-A4YQ-01 17 9532018 9532018 C A WDR16 Missense_Mutation p.A352D 0.16 deleterious(0) benign(0.03) TCGA-NJ-A4YQ-01 17 9792969 9792969 G T GLP2R Missense_Mutation p.D537Y 0.29 tolerated(0.05) benign(0.037) TCGA-NJ-A4YQ-01 18 13826108 13826108 A T MC5R Missense_Mutation p.D115V 0.12 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 18 13826140 13826140 G T MC5R Missense_Mutation p.V126L 0.11 tolerated(1) benign(0.098) TCGA-NJ-A4YQ-01 18 14537829 14537829 A G POTEC Missense_Mutation p.Y261H 0.05 tolerated(0.63) possibly_damaging(0.881) TCGA-NJ-A4YQ-01 18 14542946 14542946 T A POTEC Missense_Mutation p.H67L 0.08 deleterious_low_confidence(0) benign(0.227) TCGA-NJ-A4YQ-01 18 14787090 14787090 G T ANKRD30B Missense_Mutation p.W575C 0.07 tolerated(0.06) probably_damaging(0.977) TCGA-NJ-A4YQ-01 18 28587995 28587995 C A DSC3 Silent p.L550L 0.08 TCGA-NJ-A4YQ-01 18 30092551 30092551 G T WBP11P1 RNA 0.05 TCGA-NJ-A4YQ-01 18 30093108 30093108 C A WBP11P1 RNA 0.30 TCGA-NJ-A4YQ-01 18 30254405 30254405 C G KLHL14 3'UTR 0.27 TCGA-NJ-A4YQ-01 18 30254751 30254751 T C KLHL14 Missense_Mutation p.K586E 0.13 deleterious(0.03) probably_damaging(0.973) TCGA-NJ-A4YQ-01 18 30977163 30977163 C A CCDC178 Missense_Mutation p.C23F 0.14 deleterious_low_confidence(0) benign(0.217) TCGA-NJ-A4YQ-01 18 31599554 31599554 C T NOL4 Missense_Mutation p.A262T 0.20 deleterious(0.01) benign(0.138) TCGA-NJ-A4YQ-01 18 39535227 39535227 G T PIK3C3 5'UTR 0.09 TCGA-NJ-A4YQ-01 18 40695437 40695437 G T RIT2 Silent p.G16G 0.09 TCGA-NJ-A4YQ-01 18 42530251 42530251 G T SETBP1 Missense_Mutation p.D316Y 0.10 deleterious(0) possibly_damaging(0.902) TCGA-NJ-A4YQ-01 18 42532740 42532740 T G SETBP1 Silent p.G1145G 0.12 TCGA-NJ-A4YQ-01 18 43247047 43247047 G T SLC14A2 Nonsense_Mutation p.E569* 0.16 TCGA-NJ-A4YQ-01 18 43316485 43316485 C A SLC14A1 Missense_Mutation p.P235T 0.12 deleterious(0) probably_damaging(0.988) TCGA-NJ-A4YQ-01 18 43417013 43417013 A G SIGLEC15 Silent p.K24K 0.14 TCGA-NJ-A4YQ-01 18 51057115 51057115 A C DCC 3'UTR 0.11 TCGA-NJ-A4YQ-01 18 5478250 5478250 C G EPB41L3 Missense_Mutation p.C124S 0.10 deleterious(0.01) possibly_damaging(0.893) TCGA-NJ-A4YQ-01 18 55104121 55104121 G T ONECUT2 Missense_Mutation p.M391I 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-NJ-A4YQ-01 18 55143734 55143734 G T ONECUT2 Missense_Mutation p.V432L 0.10 deleterious(0) benign(0.16) TCGA-NJ-A4YQ-01 18 55217935 55217935 C G FECH 3'UTR 0.13 TCGA-NJ-A4YQ-01 18 59221631 59221631 C A CDH20 Silent p.P703P 0.25 TCGA-NJ-A4YQ-01 18 61449763 61449763 C A SERPINB7 Missense_Mutation p.Q53K 0.05 deleterious(0) probably_damaging(0.942) TCGA-NJ-A4YQ-01 18 61558715 61558715 C A SERPINB2 Missense_Mutation p.L13I 0.16 tolerated(0.1) benign(0.255) TCGA-NJ-A4YQ-01 18 65180485 65180485 T C DSEL Missense_Mutation p.Y464C 0.13 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 18 67508565 67508565 G T DOK6 Silent p.P314P 0.07 TCGA-NJ-A4YQ-01 18 6985289 6985289 G A LAMA1 Silent p.Y1869Y 0.11 TCGA-NJ-A4YQ-01 18 7034488 7034488 C A LAMA1 Missense_Mutation p.A681S 0.16 deleterious(0.01) possibly_damaging(0.741) TCGA-NJ-A4YQ-01 18 72223613 72223613 G T CNDP1 Missense_Mutation p.R22L 0.14 tolerated_low_confidence(0.64) benign(0.008) TCGA-NJ-A4YQ-01 19 10610475 10610475 C G KEAP1 Missense_Mutation p.V79L 0.17 tolerated(0.15) possibly_damaging(0.523) TCGA-NJ-A4YQ-01 19 11144114 11144114 G T SMARCA4 Missense_Mutation p.G1232V 0.15 probably_damaging(0.915) TCGA-NJ-A4YQ-01 19 11917429 11917429 G T ZNF491 Missense_Mutation p.G221W 0.14 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 19 13059350 13059350 C T RAD23A Silent p.D152D 0.12 TCGA-NJ-A4YQ-01 19 16060028 16060028 G A OR10H4 Missense_Mutation p.E71K 0.21 deleterious(0.01) possibly_damaging(0.728) TCGA-NJ-A4YQ-01 19 18368436 18368436 A T KIAA1683 Missense_Mutation p.C1220S 0.14 deleterious(0.03) possibly_damaging(0.894) TCGA-NJ-A4YQ-01 19 18704298 18704298 G T CRLF1 3'UTR 0.44 TCGA-NJ-A4YQ-01 19 19387760 19387760 G A SUGP1 Missense_Mutation p.P636L 0.11 deleterious(0) unknown(0) TCGA-NJ-A4YQ-01 19 22940999 22940999 C A ZNF99 Missense_Mutation p.G571V 0.17 deleterious(0) probably_damaging(0.972) TCGA-NJ-A4YQ-01 19 30934792 30934792 G T ZNF536 Missense_Mutation p.G108V 0.09 tolerated(0.08) probably_damaging(1) TCGA-NJ-A4YQ-01 19 31025778 31025778 C A ZNF536 Missense_Mutation p.S732Y 0.15 deleterious(0.02) benign(0.165) TCGA-NJ-A4YQ-01 19 34824629 34824629 G A KIAA0355 Silent p.Q428Q 0.25 TCGA-NJ-A4YQ-01 19 34890690 34890690 G T GPI Missense_Mutation p.G525V 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-NJ-A4YQ-01 19 35719441 35719441 C A FAM187B Missense_Mutation p.G48V 0.23 tolerated(0.06) probably_damaging(0.982) TCGA-NJ-A4YQ-01 19 36233657 36233657 T A U2AF1L4 Missense_Mutation p.I151F 0.17 tolerated_low_confidence(0.16) benign(0.029) TCGA-NJ-A4YQ-01 19 36342388 36342388 C A NPHS1 Missense_Mutation p.R82M 0.18 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YQ-01 19 36884694 36884694 T A ZFP82 Missense_Mutation p.Q183L 0.16 tolerated(0.11) possibly_damaging(0.765) TCGA-NJ-A4YQ-01 19 38850212 38850212 G A CATSPERG Silent p.E533E 0.14 TCGA-NJ-A4YQ-01 19 43528895 43528895 C T PSG11 Silent p.K126K 0.13 TCGA-NJ-A4YQ-01 19 44039424 44039424 C G ZNF575 Missense_Mutation p.A108G 0.22 deleterious(0) probably_damaging(0.965) TCGA-NJ-A4YQ-01 19 45213812 45213812 C A CEACAM16 3'UTR 0.23 TCGA-NJ-A4YQ-01 19 46314163 46314163 C T RSPH6A Intron 0.30 TCGA-NJ-A4YQ-01 19 46857126 46857126 G C PPP5C Silent p.A81A 0.29 TCGA-NJ-A4YQ-01 19 47151760 47151760 G A DACT3 Silent p.L623L 0.18 TCGA-NJ-A4YQ-01 19 48339506 48339506 C A CRX Missense_Mutation p.P36H 0.22 deleterious(0) probably_damaging(0.98) TCGA-NJ-A4YQ-01 19 51527302 51527302 C A KLK11 Missense_Mutation p.Q186H 0.44 deleterious(0.01) probably_damaging(0.979) TCGA-NJ-A4YQ-01 19 51919275 51919275 A G SIGLEC10 Missense_Mutation p.W301R 0.18 tolerated(0.5) benign(0.021) TCGA-NJ-A4YQ-01 19 51958789 51958789 G T SIGLEC8 Missense_Mutation p.L312M 0.14 deleterious(0.02) benign(0.111) TCGA-NJ-A4YQ-01 19 52568435 52568435 A C ZNF841 Silent p.A900A 0.20 TCGA-NJ-A4YQ-01 19 52724342 52724342 G T PPP2R1A Missense_Mutation p.D492Y 0.19 deleterious(0.01) benign(0.254) TCGA-NJ-A4YQ-01 19 54515433 54515433 G T CACNG6 Missense_Mutation p.R258L 0.19 tolerated_low_confidence(0.08) benign(0.061) TCGA-NJ-A4YQ-01 19 54868182 54868182 G C LAIR1 Silent p.L167L 0.19 TCGA-NJ-A4YQ-01 19 55179546 55179546 A T LILRB4 3'UTR 0.22 TCGA-NJ-A4YQ-01 19 55333131 55333131 C A KIR3DL1 Missense_Mutation p.S256Y 0.13 tolerated(1) benign(0.024) TCGA-NJ-A4YQ-01 19 55420614 55420614 C A NCR1 Missense_Mutation p.D122E 0.12 deleterious(0.01) benign(0.104) TCGA-NJ-A4YQ-01 19 56538870 56538870 C A NLRP5 Missense_Mutation p.P424H 0.27 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 19 57642596 57642596 G T USP29 Missense_Mutation p.Q851H 0.18 deleterious(0.04) probably_damaging(0.998) TCGA-NJ-A4YQ-01 19 58596425 58596425 C A ZSCAN18 Missense_Mutation p.S443I 0.25 deleterious(0.02) benign(0.011) TCGA-NJ-A4YQ-01 19 6183162 6183162 C A ACSBG2 Missense_Mutation p.L401I 0.18 tolerated(1) possibly_damaging(0.811) TCGA-NJ-A4YQ-01 19 6495336 6495336 T A TUBB4A Nonsense_Mutation p.K392* 0.15 TCGA-NJ-A4YQ-01 19 6495352 6495352 C G TUBB4A Silent p.T386T 0.17 TCGA-NJ-A4YQ-01 19 7125355 7125355 C A INSR Missense_Mutation p.R1066L 0.16 deleterious(0) probably_damaging(0.984) TCGA-NJ-A4YQ-01 19 8367478 8367478 C - CD320 Frame_Shift_Del p.A240Qfs*29 0.18 TCGA-NJ-A4YQ-01 19 9236787 9236787 C A OR7G3 Silent p.V280V 0.15 TCGA-NJ-A4YQ-01 19 9577950 9577950 T C ZNF560 Missense_Mutation p.Y558C 0.20 tolerated(0.2) probably_damaging(0.98) TCGA-NJ-A4YQ-01 1 103400050 103400050 C T COL11A1 Silent p.E1185E 0.12 TCGA-NJ-A4YQ-01 1 103544254 103544254 C A COL11A1 Missense_Mutation p.D150Y 0.12 probably_damaging(0.999) TCGA-NJ-A4YQ-01 1 103573716 103573716 T C COL11A1 Missense_Mutation p.R7G 0.20 probably_damaging(0.978) TCGA-NJ-A4YQ-01 1 110155606 110155606 C T GNAT2 5'UTR 0.09 TCGA-NJ-A4YQ-01 1 110586445 110586445 G A STRIP1 Missense_Mutation p.C418Y 0.12 tolerated(1) benign(0.043) TCGA-NJ-A4YQ-01 1 111216333 111216333 G T KCNA3 Missense_Mutation p.R367S 0.10 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 1 114402056 114402056 G T PTPN22 Nonsense_Mutation p.Y38* 0.08 TCGA-NJ-A4YQ-01 1 11561121 11561121 G T PTCHD2 Silent p.T24T 0.20 TCGA-NJ-A4YQ-01 1 11579501 11579501 A T PTCHD2 Missense_Mutation p.Q660L 0.16 tolerated(0.3) benign(0.312) TCGA-NJ-A4YQ-01 1 11897516 11897516 C A CLCN6 Missense_Mutation p.T752N 0.15 tolerated(0.36) benign(0.006) TCGA-NJ-A4YQ-01 1 120299944 120299944 G C HMGCS2 Missense_Mutation p.A323G 0.15 tolerated(0.41) benign(0.001) TCGA-NJ-A4YQ-01 1 12835790 12835790 G T PRAMEF12 Missense_Mutation p.R131L 0.16 tolerated(0.06) benign(0) TCGA-NJ-A4YQ-01 1 143767877 143767877 G T PPIAL4G 5'UTR 0.08 TCGA-NJ-A4YQ-01 1 145021127 145021127 T C RP11-326G21.1 3'Flank 0.03 TCGA-NJ-A4YQ-01 1 145295446 145295446 A G NBPF10 Missense_Mutation p.I67V 0.18 benign(0.152) TCGA-NJ-A4YQ-01 1 145562448 145562448 A G ANKRD35 Silent p.L712L 0.17 TCGA-NJ-A4YQ-01 1 150600004 150600004 T A ENSA Missense_Mutation p.Y41F 0.11 tolerated(0.14) possibly_damaging(0.723) TCGA-NJ-A4YQ-01 1 151634641 151634641 G T SNX27 Splice_Site p.X268_splice 0.09 TCGA-NJ-A4YQ-01 1 152080153 152080153 G T TCHH Missense_Mutation p.A1847E 0.17 possibly_damaging(0.726) TCGA-NJ-A4YQ-01 1 152187885 152187885 C A HRNR Missense_Mutation p.G2074W 0.10 unknown(0) TCGA-NJ-A4YQ-01 1 152188472 152188472 G T HRNR Nonsense_Mutation p.S1878* 0.02 TCGA-NJ-A4YQ-01 1 152190972 152190972 C A HRNR Missense_Mutation p.G1045C 0.23 unknown(0) TCGA-NJ-A4YQ-01 1 152276223 152276223 C A FLG Missense_Mutation p.Q3713H 0.13 unknown(0) TCGA-NJ-A4YQ-01 1 152276224 152276224 T A FLG Missense_Mutation p.Q3713L 0.13 unknown(0) TCGA-NJ-A4YQ-01 1 152278935 152278935 A G FLG Silent p.S2809S 0.09 TCGA-NJ-A4YQ-01 1 152286189 152286189 T C FLG Silent p.S391S 0.13 TCGA-NJ-A4YQ-01 1 152323049 152323049 C A FLG2 3'UTR 0.11 TCGA-NJ-A4YQ-01 1 152328134 152328134 C A FLG2 Missense_Mutation p.G710W 0.10 unknown(0) TCGA-NJ-A4YQ-01 1 152484248 152484248 C A LCE5A Missense_Mutation p.R80S 0.34 tolerated_low_confidence(0.39) unknown(0) TCGA-NJ-A4YQ-01 1 152648675 152648675 G T LCE2C Missense_Mutation p.G62C 0.14 deleterious_low_confidence(0.02) unknown(0) TCGA-NJ-A4YQ-01 1 152671546 152671546 G T LCE2A Missense_Mutation p.G57W 0.25 deleterious_low_confidence(0.03) unknown(0) TCGA-NJ-A4YQ-01 1 153066119 153066119 G C SPRR2E Missense_Mutation p.P37A 0.14 deleterious_low_confidence(0) unknown(0) TCGA-NJ-A4YQ-01 1 153430329 153430329 G T S100A7 Missense_Mutation p.H87N 0.11 deleterious(0) probably_damaging(0.996) TCGA-NJ-A4YQ-01 1 154295748 154295748 G T AQP10 Silent p.L134L 0.08 TCGA-NJ-A4YQ-01 1 156621281 156621281 C G BCAN Missense_Mutation p.S366C 0.09 tolerated(0.12) benign(0.401) TCGA-NJ-A4YQ-01 1 156821923 156821923 C T INSRR Missense_Mutation p.C233Y 0.16 deleterious(0) possibly_damaging(0.901) TCGA-NJ-A4YQ-01 1 156823913 156823913 C A INSRR Nonsense_Mutation p.G90* 0.13 TCGA-NJ-A4YQ-01 1 156849829 156849829 G T NTRK1 Silent p.P695P 0.13 TCGA-NJ-A4YQ-01 1 157504641 157504641 C A FCRL5 Missense_Mutation p.A482S 0.12 tolerated(0.12) possibly_damaging(0.474) TCGA-NJ-A4YQ-01 1 157517179 157517179 G A FCRL5 Intron 0.18 TCGA-NJ-A4YQ-01 1 157648398 157648398 C A FCRL3 3'UTR 0.16 TCGA-NJ-A4YQ-01 1 157895812 157895812 G A RP11-451O13.1 RNA 0.16 TCGA-NJ-A4YQ-01 1 158152695 158152695 G T CD1D Missense_Mutation p.G212V 0.10 deleterious(0.04) possibly_damaging(0.794) TCGA-NJ-A4YQ-01 1 158153931 158153931 C T CD1D Silent p.G333G 0.13 TCGA-NJ-A4YQ-01 1 158299678 158299678 C A CD1B Missense_Mutation p.V191F 0.12 deleterious(0) possibly_damaging(0.779) TCGA-NJ-A4YQ-01 1 158435410 158435410 T G OR10K1 Missense_Mutation p.L20R 0.08 deleterious(0.04) probably_damaging(0.933) TCGA-NJ-A4YQ-01 1 158549021 158549021 C A OR10X1 Missense_Mutation p.L223F 0.12 deleterious(0.01) probably_damaging(1) TCGA-NJ-A4YQ-01 1 158549267 158549267 G T OR10X1 Silent p.A141A 0.07 TCGA-NJ-A4YQ-01 1 158627452 158627452 C A SPTA1 Missense_Mutation p.V874F 0.26 deleterious(0) probably_damaging(0.958) TCGA-NJ-A4YQ-01 1 158670015 158670015 A T OR6K2 Missense_Mutation p.L143Q 0.14 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YQ-01 1 158736335 158736335 G T OR6N1 Missense_Mutation p.F46L 0.09 tolerated(0.12) benign(0.047) TCGA-NJ-A4YQ-01 1 158946583 158946583 C A PYHIN1 3'UTR 0.11 TCGA-NJ-A4YQ-01 1 159505662 159505662 C A OR10J5 Missense_Mutation p.V46L 0.09 tolerated(0.18) benign(0.033) TCGA-NJ-A4YQ-01 1 159557699 159557699 C A APCS 5'UTR 0.10 TCGA-NJ-A4YQ-01 1 159558554 159558554 C A APCS 3'UTR 0.27 TCGA-NJ-A4YQ-01 1 159752077 159752077 G A DUSP23 Silent p.E134E 0.07 TCGA-NJ-A4YQ-01 1 160209851 160209851 C A DCAF8 Missense_Mutation p.R120L 0.17 tolerated(0.8) benign(0.089) TCGA-NJ-A4YQ-01 1 160721138 160721138 A T SLAMF7 Missense_Mutation p.Y258F 0.13 tolerated(0.74) benign(0) TCGA-NJ-A4YQ-01 1 161495871 161495871 C T HSPA6 Nonsense_Mutation p.Q475* 0.09 TCGA-NJ-A4YQ-01 1 162829310 162829310 C T C1orf110 Missense_Mutation p.V43M 0.15 tolerated(0.62) benign(0.006) TCGA-NJ-A4YQ-01 1 162829312 162829312 T A C1orf110 Missense_Mutation p.H42L 0.16 deleterious(0) benign(0.06) TCGA-NJ-A4YQ-01 1 163310200 163310200 A G NUF2 Missense_Mutation p.E218G 0.10 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 1 164789390 164789390 G T PBX1 Missense_Mutation p.G360V 0.13 tolerated(0.07) benign(0.272) TCGA-NJ-A4YQ-01 1 166990361 166990361 T A MAEL Missense_Mutation p.S361T 0.11 tolerated(0.36) benign(0.064) TCGA-NJ-A4YQ-01 1 166990920 166990920 G T MAEL Missense_Mutation p.R378M 0.26 deleterious(0) benign(0.213) TCGA-NJ-A4YQ-01 1 166990921 166990921 G T MAEL Missense_Mutation p.R378S 0.26 deleterious(0.02) benign(0.005) TCGA-NJ-A4YQ-01 1 169572428 169572428 A C SELP Missense_Mutation p.L514R 0.06 tolerated(0.53) benign(0.02) TCGA-NJ-A4YQ-01 1 171076827 171076827 C A FMO3 Silent p.S111S 0.12 TCGA-NJ-A4YQ-01 1 171605316 171605316 G T MYOC Missense_Mutation p.R422S 0.15 deleterious(0.05) possibly_damaging(0.665) TCGA-NJ-A4YQ-01 1 175052939 175052939 G T TNN Missense_Mutation p.D368Y 0.14 deleterious(0.04) possibly_damaging(0.616) TCGA-NJ-A4YQ-01 1 175087694 175087694 C A TNN Intron 0.24 TCGA-NJ-A4YQ-01 1 175106062 175106062 T C TNN Missense_Mutation p.F1178S 0.20 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 1 175113615 175113615 G C TNN Missense_Mutation p.G1230R 0.12 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 1 175348727 175348727 G T TNR Missense_Mutation p.P642T 0.08 tolerated(0.05) possibly_damaging(0.837) TCGA-NJ-A4YQ-01 1 175365882 175365882 C A TNR Missense_Mutation p.W346C 0.11 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 1 175375908 175375908 G T TNR 5'UTR 0.10 TCGA-NJ-A4YQ-01 1 176015374 176015374 T G RFWD2 Missense_Mutation p.Q455P 0.06 tolerated(0.13) benign(0.032) TCGA-NJ-A4YQ-01 1 176934355 176934355 T C ASTN1 Missense_Mutation p.I514M 0.12 tolerated_low_confidence(0.1) benign(0.028) TCGA-NJ-A4YQ-01 1 177001594 177001594 G T ASTN1 Missense_Mutation p.P288Q 0.13 deleterious_low_confidence(0) benign(0.246) TCGA-NJ-A4YQ-01 1 178490398 178490398 G T TEX35 Silent p.R195R 0.10 TCGA-NJ-A4YQ-01 1 180003076 180003076 G A CEP350 Missense_Mutation p.D1269N 0.09 benign(0.027) TCGA-NJ-A4YQ-01 1 18152504 18152504 C G ACTL8 Missense_Mutation p.C197W 0.16 deleterious(0) benign(0.005) TCGA-NJ-A4YQ-01 1 185987352 185987352 G C HMCN1 Missense_Mutation p.G1780R 0.08 possibly_damaging(0.848) TCGA-NJ-A4YQ-01 1 186159120 186159120 T G HMCN1 3'UTR 0.12 TCGA-NJ-A4YQ-01 1 193028537 193028537 C G UCHL5 5'UTR 0.18 TCGA-NJ-A4YQ-01 1 196254836 196254836 G A KCNT2 Missense_Mutation p.A883V 0.17 deleterious(0.03) benign(0.12) TCGA-NJ-A4YQ-01 1 196715021 196715021 G A CFH Missense_Mutation p.A1129T 0.11 tolerated(0.3) benign(0.062) TCGA-NJ-A4YQ-01 1 197059396 197059396 A G ASPM Silent p.T3253T 0.13 TCGA-NJ-A4YQ-01 1 198492602 198492602 C G ATP6V1G3 Missense_Mutation p.M92I 0.10 tolerated(0.06) benign(0.004) TCGA-NJ-A4YQ-01 1 200567484 200567484 T C KIF14 Silent p.P810P 0.09 TCGA-NJ-A4YQ-01 1 200955994 200955994 A G KIF21B Missense_Mutation p.Y1223H 0.12 tolerated(0.14) probably_damaging(0.994) TCGA-NJ-A4YQ-01 1 201836004 201836004 G T IPO9 Missense_Mutation p.C591F 0.12 deleterious(0.04) benign(0.209) TCGA-NJ-A4YQ-01 1 202407172 202407172 G T PPP1R12B Intron 0.13 TCGA-NJ-A4YQ-01 1 204170926 204170926 G A GOLT1A Missense_Mutation p.T44M 0.05 deleterious(0.01) possibly_damaging(0.677) TCGA-NJ-A4YQ-01 1 204943331 204943331 C A NFASC Missense_Mutation p.P435H 0.29 deleterious(0) probably_damaging(0.988) TCGA-NJ-A4YQ-01 1 205116566 205116566 C A DSTYK 3'UTR 0.15 TCGA-NJ-A4YQ-01 1 205116567 205116567 A G DSTYK 3'UTR 0.15 TCGA-NJ-A4YQ-01 1 205819059 205819059 G T PM20D1 Missense_Mutation p.R48S 0.18 tolerated(0.06) benign(0.025) TCGA-NJ-A4YQ-01 1 206225298 206225298 C T AVPR1B Silent p.I286I 0.12 TCGA-NJ-A4YQ-01 1 206328753 206328753 G T CTSE Nonsense_Mutation p.E274* 0.17 TCGA-NJ-A4YQ-01 1 207263823 207263823 C A C4BPB Missense_Mutation p.R77S 0.19 tolerated(0.16) benign(0.063) TCGA-NJ-A4YQ-01 1 207504639 207504639 G T CD55 Missense_Mutation p.R284I 0.14 tolerated(0.22) benign(0.003) TCGA-NJ-A4YQ-01 1 207748993 207748993 C A CR1 Missense_Mutation p.A1502D 0.21 deleterious(0.01) possibly_damaging(0.552) TCGA-NJ-A4YQ-01 1 208219331 208219331 C A PLXNA2 Missense_Mutation p.L1129F 0.08 deleterious(0) probably_damaging(0.995) TCGA-NJ-A4YQ-01 1 210411403 210411403 G A SERTAD4 Missense_Mutation p.S33N 0.24 tolerated(0.33) benign(0.005) TCGA-NJ-A4YQ-01 1 210415071 210415071 T A SERTAD4 Missense_Mutation p.C154S 0.09 tolerated(0.07) benign(0.014) TCGA-NJ-A4YQ-01 1 211093240 211093240 C - KCNH1 Frame_Shift_Del p.D402Tfs*21 0.19 TCGA-NJ-A4YQ-01 1 211654759 211654759 G T RD3 5'UTR 0.30 TCGA-NJ-A4YQ-01 1 213303156 213303156 G T RPS6KC1 Missense_Mutation p.K253N 0.16 tolerated(0.07) probably_damaging(0.997) TCGA-NJ-A4YQ-01 1 214802421 214802421 G A CENPF Silent p.L367L 0.14 TCGA-NJ-A4YQ-01 1 215847765 215847765 A G USH2A Silent p.D4496D 0.13 TCGA-NJ-A4YQ-01 1 216017731 216017731 T A USH2A Missense_Mutation p.I3055F 0.21 possibly_damaging(0.739) TCGA-NJ-A4YQ-01 1 216062173 216062173 T C USH2A Silent p.K2606K 0.19 TCGA-NJ-A4YQ-01 1 216062356 216062356 C A USH2A Missense_Mutation p.K2545N 0.23 benign(0.405) TCGA-NJ-A4YQ-01 1 216371684 216371684 A G USH2A Missense_Mutation p.W1352R 0.10 benign(0.234) TCGA-NJ-A4YQ-01 1 226109641 226109641 T A PYCR2 Missense_Mutation p.M153L 0.35 tolerated(1) benign(0.001) TCGA-NJ-A4YQ-01 1 226175989 226175989 C A SDE2 Missense_Mutation p.A248S 0.07 tolerated(0.41) benign(0.004) TCGA-NJ-A4YQ-01 1 228003539 228003539 A C PRSS38 Missense_Mutation p.Q41P 0.18 tolerated(0.27) benign(0.003) TCGA-NJ-A4YQ-01 1 228109491 228109491 C G WNT9A Missense_Mutation p.G276R 0.09 tolerated(0.07) benign(0.124) TCGA-NJ-A4YQ-01 1 228210445 228210445 C A WNT3A Missense_Mutation p.P50H 0.08 deleterious(0.02) benign(0.236) TCGA-NJ-A4YQ-01 1 228334575 228334575 C A GUK1 Missense_Mutation p.R84S 0.07 tolerated(0.19) benign(0.069) TCGA-NJ-A4YQ-01 1 228433199 228433199 G T OBSCN Missense_Mutation p.E1281D 0.12 benign(0.063) TCGA-NJ-A4YQ-01 1 230459115 230459115 G A PGBD5 3'UTR 0.12 TCGA-NJ-A4YQ-01 1 231472295 231472295 G A EXOC8 Silent p.S399S 0.18 TCGA-NJ-A4YQ-01 1 232564261 232564261 C A SIPA1L2 Missense_Mutation p.V1436L 0.11 tolerated(0.38) benign(0.001) TCGA-NJ-A4YQ-01 1 232577089 232577089 C T SIPA1L2 Missense_Mutation p.R1197K 0.10 tolerated(0.09) benign(0.206) TCGA-NJ-A4YQ-01 1 233120047 233120047 C A PCNXL2 3'UTR 0.32 TCGA-NJ-A4YQ-01 1 235277177 235277177 C A TOMM20 Missense_Mutation p.C100F 0.18 deleterious(0.01) probably_damaging(0.925) TCGA-NJ-A4YQ-01 1 235582795 235582795 A T TBCE Missense_Mutation p.S127C 0.08 deleterious(0.03) possibly_damaging(0.571) TCGA-NJ-A4YQ-01 1 236195793 236195793 T C NID1 Missense_Mutation p.Y482C 0.13 tolerated(0.15) probably_damaging(0.977) TCGA-NJ-A4YQ-01 1 236195948 236195948 G T NID1 Silent p.S430S 0.05 TCGA-NJ-A4YQ-01 1 236211988 236211988 A T NID1 Splice_Site p.X175_splice 0.09 TCGA-NJ-A4YQ-01 1 236590748 236590748 C T EDARADD Nonsense_Mutation p.Q73* 0.10 TCGA-NJ-A4YQ-01 1 236645782 236645782 C T EDARADD Nonsense_Mutation p.Q161* 0.06 TCGA-NJ-A4YQ-01 1 237711811 237711811 T C RYR2 Missense_Mutation p.V996A 0.25 benign(0.388) TCGA-NJ-A4YQ-01 1 237730017 237730017 G T RYR2 Missense_Mutation p.C1122F 0.10 probably_damaging(0.939) TCGA-NJ-A4YQ-01 1 237777861 237777861 A C RYR2 Silent p.G1811G 0.20 TCGA-NJ-A4YQ-01 1 237789102 237789102 C A RYR2 Missense_Mutation p.S2055Y 0.18 possibly_damaging(0.615) TCGA-NJ-A4YQ-01 1 240071680 240071680 G T CHRM3 Missense_Mutation p.R310L 0.26 tolerated(0.41) benign(0.112) TCGA-NJ-A4YQ-01 1 240370354 240370354 C A FMN2 Missense_Mutation p.P748T 0.21 unknown(0) TCGA-NJ-A4YQ-01 1 240976921 240976921 G T RGS7 Missense_Mutation p.A318E 0.22 tolerated(0.94) benign(0.145) TCGA-NJ-A4YQ-01 1 241712173 241712173 G T KMO Missense_Mutation p.Q33H 0.09 tolerated(0.33) benign(0.033) TCGA-NJ-A4YQ-01 1 242511497 242511497 G A PLD5 Silent p.A79A 0.12 TCGA-NJ-A4YQ-01 1 245809467 245809467 T A KIF26B Missense_Mutation p.C715S 0.16 deleterious(0) unknown(0) TCGA-NJ-A4YQ-01 1 247615100 247615100 G C OR2B11 Missense_Mutation p.P62R 0.08 deleterious(0) probably_damaging(0.997) TCGA-NJ-A4YQ-01 1 247654715 247654715 G T OR2W5 RNA 0.06 TCGA-NJ-A4YQ-01 1 247654856 247654856 C G OR2W5 RNA 0.12 TCGA-NJ-A4YQ-01 1 247654980 247654980 T A OR2W5 RNA 0.11 TCGA-NJ-A4YQ-01 1 247655204 247655204 G T OR2W5 RNA 0.24 TCGA-NJ-A4YQ-01 1 247694758 247694758 T A OR2C3 3'UTR 0.13 TCGA-NJ-A4YQ-01 1 247751892 247751892 C A OR2G2 Silent p.T77T 0.13 TCGA-NJ-A4YQ-01 1 247752232 247752232 G T OR2G2 Missense_Mutation p.A191S 0.24 tolerated(0.27) probably_damaging(1) TCGA-NJ-A4YQ-01 1 247752243 247752243 C T OR2G2 Silent p.G194G 0.12 TCGA-NJ-A4YQ-01 1 247875464 247875464 C A OR6F1 Silent p.V198V 0.29 TCGA-NJ-A4YQ-01 1 247921269 247921269 C A OR1C1 Missense_Mutation p.G147V 0.35 tolerated(0.67) benign(0.045) TCGA-NJ-A4YQ-01 1 248084444 248084444 T A OR2T8 Missense_Mutation p.L42H 0.08 deleterious(0) probably_damaging(0.968) TCGA-NJ-A4YQ-01 1 248112226 248112226 G T OR2L8 Missense_Mutation p.D23Y 0.28 deleterious(0.02) benign(0.012) TCGA-NJ-A4YQ-01 1 248113003 248113003 C G OR2L8 Missense_Mutation p.P282A 0.10 deleterious(0) probably_damaging(0.996) TCGA-NJ-A4YQ-01 1 248224509 248224509 T A OR2L3 Missense_Mutation p.F176I 0.22 deleterious(0.01) benign(0.424) TCGA-NJ-A4YQ-01 1 248309257 248309257 C A OR2M5 Missense_Mutation p.Q270K 0.09 tolerated(0.25) benign(0.038) TCGA-NJ-A4YQ-01 1 248343347 248343347 C A OR2M2 Missense_Mutation p.H20Q 0.10 tolerated(0.13) benign(0.175) TCGA-NJ-A4YQ-01 1 248366567 248366567 G C OR2M3 Silent p.L66L 0.12 TCGA-NJ-A4YQ-01 1 248402679 248402679 C A OR2M4 Missense_Mutation p.T150N 0.10 deleterious(0.01) benign(0.008) TCGA-NJ-A4YQ-01 1 248436311 248436311 T C OR2T33 Missense_Mutation p.D269G 0.14 deleterious(0.01) probably_damaging(0.926) TCGA-NJ-A4YQ-01 1 248436531 248436531 C T OR2T33 Missense_Mutation p.A196T 0.10 deleterious(0.02) possibly_damaging(0.523) TCGA-NJ-A4YQ-01 1 248458817 248458817 G T OR2T12 Missense_Mutation p.H22N 0.21 tolerated(0.08) possibly_damaging(0.641) TCGA-NJ-A4YQ-01 1 248487137 248487137 A T OR2M7 Missense_Mutation p.L245H 0.14 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 1 248512413 248512413 C A OR14C36 Missense_Mutation p.L113I 0.18 deleterious(0.01) possibly_damaging(0.725) TCGA-NJ-A4YQ-01 1 248525838 248525838 C T OR2T4 Missense_Mutation p.P319L 0.17 deleterious(0) probably_damaging(0.971) TCGA-NJ-A4YQ-01 1 248569421 248569421 A G OR2T1 Silent p.L42L 0.19 TCGA-NJ-A4YQ-01 1 248637272 248637272 C A OR2T3 Nonsense_Mutation p.C207* 0.10 TCGA-NJ-A4YQ-01 1 248685221 248685221 A G OR2G6 Missense_Mutation p.M92V 0.11 deleterious(0.02) benign(0.001) TCGA-NJ-A4YQ-01 1 248685604 248685604 C T OR2G6 Silent p.G219G 0.23 TCGA-NJ-A4YQ-01 1 248685706 248685706 G T OR2G6 Silent p.G253G 0.09 TCGA-NJ-A4YQ-01 1 248685890 248685890 A G OR2G6 Missense_Mutation p.K315E 0.16 deleterious(0.04) benign(0.014) TCGA-NJ-A4YQ-01 1 248813508 248813508 A T OR2T27 Nonsense_Mutation p.Y226* 0.15 TCGA-NJ-A4YQ-01 1 249211883 249211883 G A PGBD2 Missense_Mutation p.G367E 0.09 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 1 249212626 249212626 G T PGBD2 3'UTR 0.12 TCGA-NJ-A4YQ-01 1 26751806 26751806 A G LIN28A Missense_Mutation p.M81V 0.18 tolerated(0.05) benign(0.145) TCGA-NJ-A4YQ-01 1 28476541 28476541 G A PTAFR Missense_Mutation p.P331L 0.20 deleterious(0) possibly_damaging(0.71) TCGA-NJ-A4YQ-01 1 32203837 32203837 G A BAI2 Silent p.S912S 0.20 TCGA-NJ-A4YQ-01 1 32712919 32712919 C A FAM167B 5'UTR 0.18 TCGA-NJ-A4YQ-01 1 33957208 33957208 G T ZSCAN20 Missense_Mutation p.M450I 0.15 tolerated(0.23) benign(0.003) TCGA-NJ-A4YQ-01 1 33957209 33957209 G T ZSCAN20 Missense_Mutation p.A451S 0.15 deleterious(0.02) benign(0.075) TCGA-NJ-A4YQ-01 1 34037282 34037282 G A CSMD2 Nonsense_Mutation p.R2605* 0.14 TCGA-NJ-A4YQ-01 1 34049273 34049273 C A CSMD2 Missense_Mutation p.E2405D 0.18 deleterious(0.01) possibly_damaging(0.852) TCGA-NJ-A4YQ-01 1 35227443 35227443 C T GJB4 Silent p.I196I 0.18 TCGA-NJ-A4YQ-01 1 3677865 3677865 G A CCDC27 Silent p.L244L 0.09 TCGA-NJ-A4YQ-01 1 39900304 39900304 G T MACF1 Missense_Mutation p.R3866S 0.29 probably_damaging(0.982) TCGA-NJ-A4YQ-01 1 40128993 40128993 T A NT5C1A Missense_Mutation p.I183F 0.14 deleterious(0) probably_damaging(0.934) TCGA-NJ-A4YQ-01 1 43748659 43748659 G A C1orf210 Missense_Mutation p.L47F 0.16 tolerated(0.07) benign(0.184) TCGA-NJ-A4YQ-01 1 43748661 43748661 A C C1orf210 Missense_Mutation p.L46R 0.14 deleterious(0) possibly_damaging(0.794) TCGA-NJ-A4YQ-01 1 52238379 52238379 G T OSBPL9 Missense_Mutation p.G395V 0.08 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 1 53730042 53730042 G - LRP8 Frame_Shift_Del p.P485Rfs*110 0.17 TCGA-NJ-A4YQ-01 1 54332053 54332053 T A YIPF1 Silent p.I217I 0.11 TCGA-NJ-A4YQ-01 1 55223833 55223833 C A PARS2 Silent p.L334L 0.08 TCGA-NJ-A4YQ-01 1 55331015 55331015 G A DHCR24 Silent p.Y327Y 0.10 TCGA-NJ-A4YQ-01 1 60456410 60456410 G T C1orf87 Missense_Mutation p.R526S 0.08 deleterious(0) benign(0.186) TCGA-NJ-A4YQ-01 1 62672826 62672826 G T L1TD1 Nonsense_Mutation p.E176* 0.31 TCGA-NJ-A4YQ-01 1 64624663 64624663 G T ROR1 Splice_Site p.X392_splice 0.13 TCGA-NJ-A4YQ-01 1 65234364 65234364 A C RAVER2 Missense_Mutation p.Y92S 0.15 deleterious(0) probably_damaging(0.981) TCGA-NJ-A4YQ-01 1 67293554 67293554 T A WDR78 Missense_Mutation p.I685F 0.06 deleterious(0) probably_damaging(0.997) TCGA-NJ-A4YQ-01 1 75039156 75039156 C A C1orf173 Missense_Mutation p.M746I 0.16 tolerated(0.06) benign(0.003) TCGA-NJ-A4YQ-01 1 7527948 7527948 A T CAMTA1 Missense_Mutation p.Y166F 0.15 deleterious(0) probably_damaging(0.968) TCGA-NJ-A4YQ-01 1 77510182 77510182 C A ST6GALNAC5 Silent p.V185V 0.10 TCGA-NJ-A4YQ-01 1 82450967 82450967 G A LPHN2 Missense_Mutation p.D1129N 0.21 deleterious(0.01) probably_damaging(0.925) TCGA-NJ-A4YQ-01 1 86173680 86173680 C A ZNHIT6 Missense_Mutation p.W96C 0.13 deleterious_low_confidence(0.05) possibly_damaging(0.832) TCGA-NJ-A4YQ-01 1 86173681 86173681 C A ZNHIT6 Missense_Mutation p.W96L 0.13 deleterious_low_confidence(0.04) benign(0.272) TCGA-NJ-A4YQ-01 1 86200608 86200608 G A COL24A1 Missense_Mutation p.H1608Y 0.17 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 1 86591173 86591173 A T COL24A1 Missense_Mutation p.D282E 0.11 tolerated(0.99) benign(0.002) TCGA-NJ-A4YQ-01 1 89449641 89449641 G T RBMXL1 5'UTR 0.11 TCGA-NJ-A4YQ-01 1 89637632 89637632 C T GBP7 5'UTR 0.08 TCGA-NJ-A4YQ-01 1 89844074 89844074 T A GBP6 Missense_Mutation p.F176Y 0.14 deleterious(0) probably_damaging(0.996) TCGA-NJ-A4YQ-01 1 90180148 90180148 G T LRRC8C Missense_Mutation p.E673D 0.10 deleterious(0.02) possibly_damaging(0.908) TCGA-NJ-A4YQ-01 1 91180296 91180296 C A BARHL2 Missense_Mutation p.D215Y 0.11 deleterious(0.02) unknown(0) TCGA-NJ-A4YQ-01 1 91781504 91781504 G T HFM1 Missense_Mutation p.A1003E 0.11 tolerated(0.08) benign(0.371) TCGA-NJ-A4YQ-01 1 92528642 92528642 C A EPHX4 Silent p.T296T 0.15 TCGA-NJ-A4YQ-01 1 94546251 94546251 C T ABCA4 Silent p.Q294Q 0.20 TCGA-NJ-A4YQ-01 1 99764758 99764758 T A LPPR4 Missense_Mutation p.S236T 0.19 tolerated(0.67) benign(0.257) TCGA-NJ-A4YQ-01 20 10394331 10394331 C G MKKS 5'UTR 0.25 TCGA-NJ-A4YQ-01 20 13867010 13867010 G T SEL1L2 Missense_Mutation p.S275Y 0.28 tolerated(0.36) probably_damaging(0.962) TCGA-NJ-A4YQ-01 20 1532543 1532543 C T SIRPD Missense_Mutation p.R72Q 0.09 tolerated(0.11) benign(0.38) TCGA-NJ-A4YQ-01 20 23424653 23424653 G A CSTL1 Missense_Mutation p.C101Y 0.18 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 20 23807101 23807101 C A CST2 Missense_Mutation p.R66L 0.18 deleterious(0.03) benign(0.361) TCGA-NJ-A4YQ-01 20 2582872 2582872 C - TMC2 Frame_Shift_Del p.L447Sfs*26 0.12 TCGA-NJ-A4YQ-01 20 2841419 2841419 G T VPS16 Missense_Mutation p.W180C 0.23 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 20 31021429 31021429 G T ASXL1 Silent p.L476L 0.17 TCGA-NJ-A4YQ-01 20 31873890 31873890 C G BPIFB1 Missense_Mutation p.P4R 0.08 deleterious(0.04) benign(0.067) TCGA-NJ-A4YQ-01 20 3209279 3209279 A G SLC4A11 Missense_Mutation p.L799P 0.11 deleterious(0) probably_damaging(0.997) TCGA-NJ-A4YQ-01 20 33703722 33703722 T A EDEM2 Silent p.R417R 0.17 TCGA-NJ-A4YQ-01 20 33703723 33703723 C A EDEM2 Missense_Mutation p.R417L 0.17 tolerated(0.22) benign(0.061) TCGA-NJ-A4YQ-01 20 36361319 36361319 G A CTNNBL1 Silent p.E23E 0.13 TCGA-NJ-A4YQ-01 20 36874463 36874463 G T KIAA1755 Silent p.A23A 0.17 TCGA-NJ-A4YQ-01 20 36954734 36954734 C A BPI Missense_Mutation p.S358Y 0.21 tolerated(0.14) possibly_damaging(0.845) TCGA-NJ-A4YQ-01 20 37356415 37356415 C A SLC32A1 Silent p.P237P 0.18 TCGA-NJ-A4YQ-01 20 37356582 37356582 C A SLC32A1 Missense_Mutation p.A293D 0.13 deleterious(0.03) benign(0.115) TCGA-NJ-A4YQ-01 20 37631511 37631511 G T DHX35 Missense_Mutation p.Q284H 0.13 deleterious(0.01) probably_damaging(0.971) TCGA-NJ-A4YQ-01 20 40730872 40730872 G A PTPRT Silent p.N1202N 0.12 TCGA-NJ-A4YQ-01 20 40944479 40944479 C A PTPRT Missense_Mutation p.V675F 0.15 deleterious(0.02) benign(0.109) TCGA-NJ-A4YQ-01 20 43058208 43058208 C A HNF4A Missense_Mutation p.S443Y 0.08 deleterious_low_confidence(0.02) benign(0.1) TCGA-NJ-A4YQ-01 20 43384801 43384801 C A RIMS4 Missense_Mutation p.V263L 0.16 deleterious_low_confidence(0.04) benign(0.003) TCGA-NJ-A4YQ-01 20 43547850 43547850 A T PABPC1L Missense_Mutation p.R224W 0.12 tolerated(0.18) possibly_damaging(0.886) TCGA-NJ-A4YQ-01 20 44639908 44639908 C A MMP9 Missense_Mutation p.T259K 0.08 deleterious(0) probably_damaging(0.987) TCGA-NJ-A4YQ-01 20 47570260 47570260 G T ARFGEF2 Missense_Mutation p.R257S 0.22 tolerated(0.7) benign(0.002) TCGA-NJ-A4YQ-01 20 4764982 4764982 G T RASSF2 Silent p.T306T 0.14 TCGA-NJ-A4YQ-01 20 480524 480524 C A CSNK2A1 Nonsense_Mutation p.G90* 0.07 TCGA-NJ-A4YQ-01 20 4855259 4855259 C G SLC23A2 Missense_Mutation p.W303S 0.10 tolerated(0.32) probably_damaging(0.999) TCGA-NJ-A4YQ-01 20 50407048 50407048 C A SALL4 Silent p.L658L 0.08 TCGA-NJ-A4YQ-01 20 5170919 5170919 C T CDS2 3'UTR 0.19 TCGA-NJ-A4YQ-01 20 51871975 51871975 G T TSHZ2 Nonsense_Mutation p.E660* 0.13 TCGA-NJ-A4YQ-01 20 54824139 54824139 G A MC3R Silent p.L80L 0.06 TCGA-NJ-A4YQ-01 20 54974275 54974275 T G CSTF1 Missense_Mutation p.F300V 0.18 deleterious(0) benign(0.146) TCGA-NJ-A4YQ-01 20 55012503 55012503 C A CASS4 Missense_Mutation p.P107H 0.12 deleterious(0) possibly_damaging(0.827) TCGA-NJ-A4YQ-01 20 5538643 5538643 C A GPCPD1 Nonsense_Mutation p.E593* 0.12 TCGA-NJ-A4YQ-01 20 60791200 60791200 G C HRH3 Silent p.L400L 0.22 TCGA-NJ-A4YQ-01 20 61303187 61303187 C T SLCO4A1 Missense_Mutation p.P704L 0.16 deleterious(0) possibly_damaging(0.878) TCGA-NJ-A4YQ-01 20 61542466 61542466 G A DIDO1 Missense_Mutation p.R167C 0.29 probably_damaging(0.98) TCGA-NJ-A4YQ-01 20 62069998 62069998 G T KCNQ2 Missense_Mutation p.P335T 0.08 deleterious(0.01) possibly_damaging(0.839) TCGA-NJ-A4YQ-01 20 9496214 9496214 C A LAMP5 Missense_Mutation p.A60E 0.14 deleterious(0.01) probably_damaging(0.994) TCGA-NJ-A4YQ-01 21 10862818 10862818 G A IGHV1OR21-1 Silent p.K38K 0.05 TCGA-NJ-A4YQ-01 21 11039155 11039155 T A BAGE2 RNA 0.03 TCGA-NJ-A4YQ-01 21 11049598 11049598 C A BAGE2 RNA 0.05 TCGA-NJ-A4YQ-01 21 27852654 27852654 G C CYYR1 Missense_Mutation p.H91D 0.13 tolerated(0.12) benign(0.018) TCGA-NJ-A4YQ-01 21 32598214 32598214 C T TIAM1 Missense_Mutation p.C546Y 0.12 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YQ-01 21 37741775 37741775 A G MORC3 Silent p.L703L 0.18 TCGA-NJ-A4YQ-01 21 37833637 37833637 G T CLDN14 Silent p.I119I 0.15 TCGA-NJ-A4YQ-01 21 38390322 38390322 C - RIPPLY3 Frame_Shift_Del p.P131Hfs*91 0.16 TCGA-NJ-A4YQ-01 21 43221323 43221323 T A PRDM15 3'Flank 0.18 TCGA-NJ-A4YQ-01 21 44485371 44485371 G A CBS Silent p.A226A 0.15 TCGA-NJ-A4YQ-01 22 24123440 24123440 G T MMP11 Nonsense_Mutation p.E307* 0.15 TCGA-NJ-A4YQ-01 22 26736411 26736411 G T SEZ6L Silent p.L675L 0.14 TCGA-NJ-A4YQ-01 22 32477882 32477882 C A SLC5A1 Silent p.I169I 0.12 TCGA-NJ-A4YQ-01 22 37902246 37902246 G A CARD10 Silent p.L446L 0.35 TCGA-NJ-A4YQ-01 22 39884219 39884219 C A MGAT3 Missense_Mutation p.D289E 0.19 tolerated(0.17) benign(0.398) TCGA-NJ-A4YQ-01 22 40036947 40036947 G T CACNA1I Silent p.S272S 0.18 TCGA-NJ-A4YQ-01 22 41536235 41536235 G A EP300 Missense_Mutation p.D618N 0.15 unknown(0) TCGA-NJ-A4YQ-01 22 42172193 42172193 G T MEI1 Missense_Mutation p.V878L 0.20 tolerated(0.28) benign(0.018) TCGA-NJ-A4YQ-01 22 50696672 50696672 A T MAPK12 Missense_Mutation p.F105Y 0.07 deleterious(0) possibly_damaging(0.896) TCGA-NJ-A4YQ-01 2 101010155 101010155 C A CHST10 Missense_Mutation p.R208L 0.13 deleterious(0.01) benign(0.374) TCGA-NJ-A4YQ-01 2 107423036 107423036 C A ST6GAL2 3'UTR 0.15 TCGA-NJ-A4YQ-01 2 107459806 107459806 C T ST6GAL2 Missense_Mutation p.G210R 0.07 probably_damaging(0.993) TCGA-NJ-A4YQ-01 2 113940528 113940528 G T PSD4 Missense_Mutation p.M165I 0.14 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-NJ-A4YQ-01 2 114002147 114002147 C A PAX8 Missense_Mutation p.K82N 0.10 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YQ-01 2 116539928 116539928 G T DPP10 Missense_Mutation p.G499V 0.17 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 2 121747365 121747365 C A GLI2 Missense_Mutation p.P1292H 0.17 deleterious_low_confidence(0.04) possibly_damaging(0.594) TCGA-NJ-A4YQ-01 2 124783286 124783286 A C CNTNAP5 Missense_Mutation p.H20P 0.10 tolerated(0.07) benign(0.406) TCGA-NJ-A4YQ-01 2 124979290 124979290 G C CNTNAP5 Missense_Mutation p.D31H 0.22 deleterious(0.03) possibly_damaging(0.826) TCGA-NJ-A4YQ-01 2 125627324 125627324 T G CNTNAP5 Missense_Mutation p.L1140V 0.09 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 2 125671702 125671702 G T CNTNAP5 Missense_Mutation p.C1253F 0.13 deleterious(0) possibly_damaging(0.474) TCGA-NJ-A4YQ-01 2 128351195 128351195 G - MYO7B Frame_Shift_Del p.K742Rfs*6 0.18 TCGA-NJ-A4YQ-01 2 128367240 128367240 C A MYO7B Silent p.R992R 0.16 TCGA-NJ-A4YQ-01 2 130877917 130877917 T A POTEF Missense_Mutation p.R58W 0.11 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-NJ-A4YQ-01 2 130897863 130897863 C A CCDC74B Silent p.A255A 0.13 TCGA-NJ-A4YQ-01 2 130951766 130951766 G T TUBA3E Missense_Mutation p.L217M 0.14 deleterious_low_confidence(0.02) probably_damaging(0.926) TCGA-NJ-A4YQ-01 2 135705409 135705409 A G CCNT2 Missense_Mutation p.T215A 0.12 deleterious(0.01) probably_damaging(0.93) TCGA-NJ-A4YQ-01 2 136396678 136396678 G T R3HDM1 Missense_Mutation p.R402M 0.16 deleterious(0) probably_damaging(0.928) TCGA-NJ-A4YQ-01 2 137928360 137928360 A G THSD7B Silent p.A525A 0.18 TCGA-NJ-A4YQ-01 2 137990559 137990559 C A THSD7B Missense_Mutation p.P669H 0.17 deleterious(0) possibly_damaging(0.878) TCGA-NJ-A4YQ-01 2 138373847 138373847 C A THSD7B Missense_Mutation p.L1179M 0.15 deleterious(0.01) unknown(0) TCGA-NJ-A4YQ-01 2 141143547 141143547 C A LRP1B Missense_Mutation p.Q3482H 0.10 possibly_damaging(0.522) TCGA-NJ-A4YQ-01 2 141299455 141299455 G A LRP1B Missense_Mutation p.A2427V 0.19 possibly_damaging(0.483) TCGA-NJ-A4YQ-01 2 141680609 141680609 C A LRP1B Missense_Mutation p.G1082C 0.13 probably_damaging(0.999) TCGA-NJ-A4YQ-01 2 143713799 143713799 C T KYNU Nonsense_Mutation p.R155* 0.08 TCGA-NJ-A4YQ-01 2 145147080 145147080 C A ZEB2 Nonsense_Mutation p.E1195* 0.11 TCGA-NJ-A4YQ-01 2 149247401 149247401 C T MBD5 Silent p.P1167P 0.17 TCGA-NJ-A4YQ-01 2 149837907 149837907 G C KIF5C Missense_Mutation p.Q467H 0.19 deleterious(0) probably_damaging(0.993) TCGA-NJ-A4YQ-01 2 152220477 152220477 C G TNFAIP6 Missense_Mutation p.H39D 0.10 deleterious(0) possibly_damaging(0.873) TCGA-NJ-A4YQ-01 2 152404840 152404840 G T NEB Silent p.V6713V 0.10 TCGA-NJ-A4YQ-01 2 158272299 158272299 T A CYTIP Missense_Mutation p.M324L 0.07 tolerated(0.66) benign(0.005) TCGA-NJ-A4YQ-01 2 162273325 162273325 C A TBR1 Missense_Mutation p.P135H 0.19 deleterious(0) probably_damaging(0.99) TCGA-NJ-A4YQ-01 2 162760562 162760562 C A SLC4A10 Missense_Mutation p.F497L 0.24 deleterious(0.04) benign(0.015) TCGA-NJ-A4YQ-01 2 163200676 163200676 C T GCA 5'UTR 0.16 TCGA-NJ-A4YQ-01 2 163302574 163302574 G T KCNH7 Missense_Mutation p.A503E 0.15 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 2 1652933 1652933 G T PXDN Silent p.A873A 0.10 TCGA-NJ-A4YQ-01 2 166535754 166535754 G T CSRNP3 Missense_Mutation p.A417S 0.14 tolerated(0.54) benign(0.142) TCGA-NJ-A4YQ-01 2 166866270 166866270 G C SCN1A Missense_Mutation p.L1321V 0.10 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 2 168103654 168103654 C A XIRP2 Missense_Mutation p.L1918I 0.12 benign(0.004) TCGA-NJ-A4YQ-01 2 168104966 168104966 C G XIRP2 Missense_Mutation p.S2355C 0.14 probably_damaging(0.91) TCGA-NJ-A4YQ-01 2 168107822 168107822 A T XIRP2 Missense_Mutation p.E3307V 0.14 probably_damaging(0.923) TCGA-NJ-A4YQ-01 2 170055393 170055393 T G LRP2 Silent p.T2827T 0.11 TCGA-NJ-A4YQ-01 2 170112653 170112653 C T LRP2 Silent p.E911E 0.19 TCGA-NJ-A4YQ-01 2 170151120 170151120 T A LRP2 Missense_Mutation p.E176D 0.20 probably_damaging(0.998) TCGA-NJ-A4YQ-01 2 172953076 172953076 G A DLX1 3'UTR 0.12 TCGA-NJ-A4YQ-01 2 176964685 176964685 C A HOXD12 Silent p.A52A 0.23 TCGA-NJ-A4YQ-01 2 178080811 178080811 G T HNRNPA3 Missense_Mutation p.G150C 0.17 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 2 179466615 179466615 A G TTN Silent p.D18432D 0.15 TCGA-NJ-A4YQ-01 2 179478579 179478579 A G TTN Silent p.D16477D 0.15 TCGA-NJ-A4YQ-01 2 179553837 179553837 G T TTN Missense_Mutation p.P10680T 0.12 TCGA-NJ-A4YQ-01 2 179580319 179580319 C G TTN Missense_Mutation p.E8608Q 0.19 TCGA-NJ-A4YQ-01 2 179594882 179594882 T A TTN Missense_Mutation p.Y6082F 0.16 TCGA-NJ-A4YQ-01 2 179632594 179632594 C A TTN Missense_Mutation p.M3121I 0.16 TCGA-NJ-A4YQ-01 2 179701621 179701621 C A CCDC141 Missense_Mutation p.W1442L 0.08 deleterious(0) probably_damaging(0.982) TCGA-NJ-A4YQ-01 2 182542871 182542871 G A NEUROD1 Silent p.V239V 0.16 TCGA-NJ-A4YQ-01 2 183795447 183795447 C G NCKAP1 Missense_Mutation p.V983L 0.11 tolerated(0.56) benign(0.004) TCGA-NJ-A4YQ-01 2 185731201 185731201 G A ZNF804A Missense_Mutation p.D73N 0.14 deleterious(0) probably_damaging(0.992) TCGA-NJ-A4YQ-01 2 185802200 185802200 T A ZNF804A Missense_Mutation p.C693S 0.11 tolerated(0.4) benign(0.001) TCGA-NJ-A4YQ-01 2 186670523 186670523 C G FSIP2 Missense_Mutation p.A5586G 0.11 benign(0.087) TCGA-NJ-A4YQ-01 2 186673508 186673508 C - FSIP2 Frame_Shift_Del p.Q6582Kfs*7 0.09 TCGA-NJ-A4YQ-01 2 1921052 1921052 C A MYT1L Missense_Mutation p.G513C 0.21 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 2 201399808 201399808 A G SGOL2 Missense_Mutation p.I75V 0.14 tolerated(0.1) benign(0.084) TCGA-NJ-A4YQ-01 2 201485848 201485848 T A AOX1 Missense_Mutation p.I627N 0.16 deleterious(0) possibly_damaging(0.814) TCGA-NJ-A4YQ-01 2 204820589 204820589 T C ICOS Missense_Mutation p.Y97H 0.22 tolerated(0.21) benign(0.005) TCGA-NJ-A4YQ-01 2 207564607 207564607 C G DYTN Missense_Mutation p.S188T 0.18 tolerated(0.17) probably_damaging(0.978) TCGA-NJ-A4YQ-01 2 211018645 211018645 T C KANSL1L Missense_Mutation p.H221R 0.30 tolerated(0.08) benign(0) TCGA-NJ-A4YQ-01 2 21228652 21228652 A C APOB Missense_Mutation p.I3696M 0.21 benign(0.004) TCGA-NJ-A4YQ-01 2 21230450 21230450 T C APOB Missense_Mutation p.K3097R 0.24 probably_damaging(0.993) TCGA-NJ-A4YQ-01 2 218677119 218677119 C A TNS1 Silent p.L1564L 0.15 TCGA-NJ-A4YQ-01 2 219360654 219360654 C A USP37 Missense_Mutation p.S434I 0.05 deleterious(0.01) benign(0.217) TCGA-NJ-A4YQ-01 2 219500599 219500599 C A PLCD4 Silent p.I659I 0.14 TCGA-NJ-A4YQ-01 2 219874159 219874159 C T CCDC108 Silent p.G1492G 0.12 TCGA-NJ-A4YQ-01 2 219941074 219941074 C A NHEJ1 3'UTR 0.06 TCGA-NJ-A4YQ-01 2 220113323 220113323 A T STK16 3'UTR 0.08 TCGA-NJ-A4YQ-01 2 223559247 223559247 G T MOGAT1 Missense_Mutation p.L215F 0.12 deleterious(0.01) probably_damaging(1) TCGA-NJ-A4YQ-01 2 225266188 225266188 G T FAM124B Missense_Mutation p.Q100K 0.24 deleterious(0.03) benign(0.242) TCGA-NJ-A4YQ-01 2 228881203 228881203 G T SPHKAP Missense_Mutation p.A1456E 0.12 tolerated(0.26) possibly_damaging(0.613) TCGA-NJ-A4YQ-01 2 234463172 234463172 C A USP40 Nonsense_Mutation p.E195* 0.08 TCGA-NJ-A4YQ-01 2 238266479 238266479 G A COL6A3 Missense_Mutation p.T2173I 0.10 benign(0.017) TCGA-NJ-A4YQ-01 2 238275606 238275606 G T COL6A3 Silent p.R1742R 0.13 TCGA-NJ-A4YQ-01 2 240969849 240969849 C A OR6B2 5'UTR 0.09 TCGA-NJ-A4YQ-01 2 24207567 24207567 A T UBXN2A Missense_Mutation p.K150N 0.16 deleterious(0.04) benign(0.347) TCGA-NJ-A4YQ-01 2 24507633 24507633 T A ITSN2 Missense_Mutation p.K648M 0.14 deleterious(0) unknown(0) TCGA-NJ-A4YQ-01 2 25458603 25458603 T A DNMT3A Missense_Mutation p.D857V 0.21 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 2 26688940 26688940 G A OTOF Missense_Mutation p.T1502M 0.08 deleterious(0.04) probably_damaging(0.999) TCGA-NJ-A4YQ-01 2 26717868 26717868 C A OTOF Missense_Mutation p.G280V 0.14 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 2 27301871 27301871 C T EMILIN1 5'UTR 0.24 TCGA-NJ-A4YQ-01 2 27505742 27505742 G T TRIM54 Missense_Mutation p.R48L 0.18 deleterious(0) possibly_damaging(0.884) TCGA-NJ-A4YQ-01 2 27703016 27703016 C A IFT172 Missense_Mutation p.R262S 0.15 deleterious(0) probably_damaging(0.962) TCGA-NJ-A4YQ-01 2 27722063 27722063 G A GCKR Silent p.E161E 0.19 TCGA-NJ-A4YQ-01 2 31562386 31562386 C T XDH Missense_Mutation p.C1248Y 0.19 deleterious(0.02) benign(0.281) TCGA-NJ-A4YQ-01 2 31599928 31599928 T A XDH Missense_Mutation p.Q473L 0.13 tolerated(1) benign(0.001) TCGA-NJ-A4YQ-01 2 32673983 32673983 A C BIRC6 Silent p.S1535S 0.16 TCGA-NJ-A4YQ-01 2 37041551 37041551 G T VIT 3'UTR 0.24 TCGA-NJ-A4YQ-01 2 37365665 37365665 C A EIF2AK2 Missense_Mutation p.V194L 0.15 tolerated(0.35) benign(0.027) TCGA-NJ-A4YQ-01 2 38977301 38977301 C A SRSF7 Missense_Mutation p.A22S 0.14 deleterious(0.01) probably_damaging(0.991) TCGA-NJ-A4YQ-01 2 42990807 42990807 C T OXER1 Missense_Mutation p.M171I 0.18 deleterious(0.01) benign(0.334) TCGA-NJ-A4YQ-01 2 44079902 44079902 A G ABCG8 Missense_Mutation p.T287A 0.10 tolerated(0.09) benign(0.011) TCGA-NJ-A4YQ-01 2 44508563 44508563 G T SLC3A1 Silent p.T216T 0.08 TCGA-NJ-A4YQ-01 2 47690261 47690261 A T MSH2 Missense_Mutation p.Q493L 0.13 deleterious(0.03) possibly_damaging(0.491) TCGA-NJ-A4YQ-01 2 47693845 47693845 G T MSH2 Missense_Mutation p.G520V 0.16 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 2 48915778 48915778 T C LHCGR Silent p.T386T 0.19 TCGA-NJ-A4YQ-01 2 50692613 50692613 T A NRXN1 Missense_Mutation p.M1151L 0.10 tolerated(0.07) probably_damaging(0.912) TCGA-NJ-A4YQ-01 2 62107478 62107478 A C CCT4 Missense_Mutation p.S108A 0.05 deleterious(0) probably_damaging(0.993) TCGA-NJ-A4YQ-01 2 64685537 64685537 A G LGALSL Missense_Mutation p.D165G 0.09 tolerated(0.06) benign(0.211) TCGA-NJ-A4YQ-01 2 67631469 67631469 G T ETAA1 Missense_Mutation p.G552V 0.12 deleterious(0) probably_damaging(0.964) TCGA-NJ-A4YQ-01 2 7018185 7018185 A G RSAD2 Missense_Mutation p.Y85C 0.09 deleterious(0) probably_damaging(0.976) TCGA-NJ-A4YQ-01 2 73315271 73315271 C A RAB11FIP5 Missense_Mutation p.G492V 0.11 deleterious(0.04) probably_damaging(1) TCGA-NJ-A4YQ-01 2 74140736 74140736 G T ACTG2 Missense_Mutation p.K192N 0.13 deleterious_low_confidence(0.04) possibly_damaging(0.729) TCGA-NJ-A4YQ-01 2 79385824 79385824 G C REG3A Missense_Mutation p.H50D 0.14 deleterious(0.05) possibly_damaging(0.605) TCGA-NJ-A4YQ-01 2 86088357 86088357 T A ST3GAL5 Missense_Mutation p.T89S 0.20 tolerated(0.49) benign(0.004) TCGA-NJ-A4YQ-01 2 89102387 89102387 G A ANKRD36BP2 RNA 0.25 TCGA-NJ-A4YQ-01 2 95847781 95847781 G T ZNF2 Missense_Mutation p.C403F 0.11 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 2 96789722 96789722 A T ASTL Missense_Mutation p.L388Q 0.11 tolerated_low_confidence(0.25) benign(0.023) TCGA-NJ-A4YQ-01 2 98195446 98195446 C A ANKRD36B RNA 0.08 TCGA-NJ-A4YQ-01 3 100373991 100373991 G C GPR128 Silent p.R564R 0.14 TCGA-NJ-A4YQ-01 3 100585731 100585731 G T ABI3BP Missense_Mutation p.P334H 0.13 tolerated(0.08) possibly_damaging(0.893) TCGA-NJ-A4YQ-01 3 101059014 101059014 C A SENP7 Missense_Mutation p.G761V 0.14 deleterious(0) probably_damaging(0.957) TCGA-NJ-A4YQ-01 3 108723663 108723663 C T MORC1 Splice_Site p.X695_splice 0.13 TCGA-NJ-A4YQ-01 3 112647835 112647835 C A CD200R1 Silent p.A199A 0.10 TCGA-NJ-A4YQ-01 3 113634669 113634669 T C GRAMD1C Silent p.S358S 0.13 TCGA-NJ-A4YQ-01 3 114026997 114026997 G A TIGIT 3'UTR 0.11 TCGA-NJ-A4YQ-01 3 121353096 121353096 C T HCLS1 Silent p.E287E 0.17 TCGA-NJ-A4YQ-01 3 121641150 121641150 G T SLC15A2 Splice_Site p.X260_splice 0.14 TCGA-NJ-A4YQ-01 3 122632184 122632184 C A SEMA5B Missense_Mutation p.G844C 0.25 tolerated(0.05) possibly_damaging(0.646) TCGA-NJ-A4YQ-01 3 122632241 122632241 G T SEMA5B Missense_Mutation p.P825T 0.27 deleterious(0.05) possibly_damaging(0.877) TCGA-NJ-A4YQ-01 3 122865078 122865080 AAG - PDIA5 In_Frame_Del p.K374del 0.10 TCGA-NJ-A4YQ-01 3 123687936 123687936 G T ROPN1 3'UTR 0.15 TCGA-NJ-A4YQ-01 3 125826090 125826090 C G ALDH1L1 Splice_Site p.X793_splice 0.16 TCGA-NJ-A4YQ-01 3 127379422 127379422 A G PODXL2 Missense_Mutation p.E184G 0.10 tolerated(0.09) benign(0.014) TCGA-NJ-A4YQ-01 3 128706480 128706480 C A KIAA1257 Missense_Mutation p.V216L 0.09 tolerated(0.37) benign(0.009) TCGA-NJ-A4YQ-01 3 129252663 129252663 A T RHO 3'UTR 0.14 TCGA-NJ-A4YQ-01 3 129275272 129275272 C A PLXND1 Splice_Site p.X1888_splice 0.14 TCGA-NJ-A4YQ-01 3 129290685 129290685 C A PLXND1 Missense_Mutation p.R1027L 0.18 tolerated(0.25) benign(0.087) TCGA-NJ-A4YQ-01 3 130305378 130305378 G T COL6A6 Silent p.L1333L 0.11 TCGA-NJ-A4YQ-01 3 130368298 130368298 C G COL6A6 Silent p.S1875S 0.27 TCGA-NJ-A4YQ-01 3 131254003 131254003 T - CPNE4 3'UTR 0.12 TCGA-NJ-A4YQ-01 3 136096525 136096525 C T STAG1 Missense_Mutation p.V783I 0.13 tolerated(0.28) benign(0.006) TCGA-NJ-A4YQ-01 3 140397252 140397252 C A TRIM42 Missense_Mutation p.P61T 0.14 deleterious(0.01) probably_damaging(0.962) TCGA-NJ-A4YQ-01 3 140397390 140397390 C A TRIM42 Missense_Mutation p.R107S 0.08 deleterious(0.01) possibly_damaging(0.508) TCGA-NJ-A4YQ-01 3 140401611 140401611 C G TRIM42 Missense_Mutation p.R217G 0.18 deleterious(0) probably_damaging(0.946) TCGA-NJ-A4YQ-01 3 142841163 142841163 C A CHST2 Missense_Mutation p.P502H 0.11 deleterious(0) probably_damaging(0.937) TCGA-NJ-A4YQ-01 3 147108782 147108782 C A ZIC4 Missense_Mutation p.G364C 0.16 tolerated_low_confidence(0.05) possibly_damaging(0.792) TCGA-NJ-A4YQ-01 3 147113896 147113896 C A ZIC4 Missense_Mutation p.C194F 0.15 deleterious(0) probably_damaging(0.99) TCGA-NJ-A4YQ-01 3 147120600 147120600 C A ZIC4 Splice_Site p.X46_splice 0.17 TCGA-NJ-A4YQ-01 3 148558672 148558672 G T CPB1 Missense_Mutation p.W128C 0.10 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 3 148597628 148597628 C A CPA3 Missense_Mutation p.H176Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YQ-01 3 148600343 148600343 G C CPA3 Missense_Mutation p.G247R 0.13 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 3 151129238 151129238 G T MED12L Missense_Mutation p.S1993I 0.11 deleterious_low_confidence(0) possibly_damaging(0.66) TCGA-NJ-A4YQ-01 3 151165546 151165546 C A IGSF10 Missense_Mutation p.R741S 0.12 deleterious(0.03) benign(0.112) TCGA-NJ-A4YQ-01 3 157034922 157034922 T A VEPH1 Missense_Mutation p.S602C 0.16 deleterious(0) probably_damaging(0.971) TCGA-NJ-A4YQ-01 3 164906283 164906283 C A SLITRK3 Missense_Mutation p.G779V 0.14 tolerated(0.29) probably_damaging(0.972) TCGA-NJ-A4YQ-01 3 172080423 172080423 G C FNDC3B Silent p.R932R 0.22 TCGA-NJ-A4YQ-01 3 179526078 179526078 G T PEX5L Silent p.A500A 0.08 TCGA-NJ-A4YQ-01 3 184103931 184103931 G A CHRD Missense_Mutation p.G639E 0.13 deleterious(0) probably_damaging(0.993) TCGA-NJ-A4YQ-01 3 184103932 184103932 G T CHRD Silent p.G639G 0.13 TCGA-NJ-A4YQ-01 3 185363248 185363248 G T IGF2BP2 3'UTR 0.16 TCGA-NJ-A4YQ-01 3 187416469 187416469 C A RTP2 Missense_Mutation p.W165C 0.15 deleterious(0.01) probably_damaging(0.94) TCGA-NJ-A4YQ-01 3 189526160 189526160 A T TP63 Missense_Mutation p.S142C 0.11 deleterious(0.01) possibly_damaging(0.701) TCGA-NJ-A4YQ-01 3 190120225 190120225 C G CLDN16 Missense_Mutation p.P142A 0.18 deleterious(0.02) possibly_damaging(0.619) TCGA-NJ-A4YQ-01 3 193082012 193082012 C A ATP13A5 Missense_Mutation p.V41L 0.09 tolerated(0.33) benign(0.026) TCGA-NJ-A4YQ-01 3 194081387 194081387 G T LRRC15 Missense_Mutation p.S135Y 0.08 deleterious(0) probably_damaging(0.94) TCGA-NJ-A4YQ-01 3 194118785 194118785 A C GP5 Missense_Mutation p.L76R 0.06 deleterious(0) probably_damaging(0.994) TCGA-NJ-A4YQ-01 3 194118786 194118786 G T GP5 Missense_Mutation p.L76M 0.07 deleterious(0.03) possibly_damaging(0.893) TCGA-NJ-A4YQ-01 3 195400778 195400778 C A SDHAP2 RNA 0.16 TCGA-NJ-A4YQ-01 3 197349060 197349060 C A AC024560.3 Intron 0.13 TCGA-NJ-A4YQ-01 3 197665601 197665601 C A IQCG Missense_Mutation p.M111I 0.04 tolerated(0.35) benign(0.004) TCGA-NJ-A4YQ-01 3 21606084 21606084 C A ZNF385D Missense_Mutation p.Q86H 0.11 tolerated(0.83) benign(0.16) TCGA-NJ-A4YQ-01 3 3081687 3081687 G T CNTN4 Intron 0.13 TCGA-NJ-A4YQ-01 3 33063130 33063130 T A GLB1 Silent p.A387A 0.18 TCGA-NJ-A4YQ-01 3 38645457 38645457 C A SCN5A Missense_Mutation p.D546Y 0.10 deleterious(0.03) probably_damaging(1) TCGA-NJ-A4YQ-01 3 42734231 42734231 A C HHATL 3'UTR 0.12 TCGA-NJ-A4YQ-01 3 48618579 48618579 T A COL7A1 Silent p.G1637G 0.38 TCGA-NJ-A4YQ-01 3 49308495 49308495 T A C3orf62 3'UTR 0.11 TCGA-NJ-A4YQ-01 3 51317536 51317536 G A DOCK3 Splice_Site p.X942_splice 0.12 TCGA-NJ-A4YQ-01 3 51673485 51673485 G T RAD54L2 Missense_Mutation p.L637F 0.12 deleterious(0.04) possibly_damaging(0.608) TCGA-NJ-A4YQ-01 3 52255417 52255417 C T TLR9 Missense_Mutation p.S1126N 0.09 tolerated(0.48) benign(0.274) TCGA-NJ-A4YQ-01 3 52821100 52821100 G A ITIH1 Missense_Mutation p.D625N 0.05 tolerated(0.16) possibly_damaging(0.74) TCGA-NJ-A4YQ-01 3 56674034 56674034 C T FAM208A Nonsense_Mutation p.W915* 0.18 TCGA-NJ-A4YQ-01 3 62860636 62860636 C A CADPS Silent p.V23V 0.15 TCGA-NJ-A4YQ-01 3 73433282 73433282 G T PDZRN3 Missense_Mutation p.T812K 0.12 tolerated(0.4) benign(0.178) TCGA-NJ-A4YQ-01 3 77147246 77147246 C A ROBO2 Missense_Mutation p.T64K 0.15 deleterious(0) unknown(0) TCGA-NJ-A4YQ-01 3 87017763 87017763 A T VGLL3 Missense_Mutation p.V305E 0.20 deleterious(0.03) benign(0.282) TCGA-NJ-A4YQ-01 3 89480348 89480348 G T EPHA3 Missense_Mutation p.G729W 0.12 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 3 89499326 89499326 G T EPHA3 Splice_Site p.X833_splice 0.16 TCGA-NJ-A4YQ-01 3 93624899 93624899 A G PROS1 Silent p.C145C 0.10 TCGA-NJ-A4YQ-01 3 96962846 96962846 C T EPHA6 Missense_Mutation p.L441F 0.15 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 3 97664120 97664120 T A MINA Missense_Mutation p.I436F 0.15 deleterious(0) benign(0.128) TCGA-NJ-A4YQ-01 4 100235173 100235173 G A ADH1B Silent p.G211G 0.18 TCGA-NJ-A4YQ-01 4 100334291 100334291 T G ADH7 3'UTR 0.12 TCGA-NJ-A4YQ-01 4 103635698 103635698 C A MANBA Missense_Mutation p.W190C 0.19 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 4 109767304 109767304 A T COL25A1 Silent p.P502P 0.13 TCGA-NJ-A4YQ-01 4 114251464 114251464 G T ANK2 Missense_Mutation p.G988V 0.17 probably_damaging(0.998) TCGA-NJ-A4YQ-01 4 114264292 114264292 T C ANK2 Silent p.F1414F 0.17 TCGA-NJ-A4YQ-01 4 119059214 119059214 C A NDST3 Missense_Mutation p.H410Q 0.21 tolerated(0.05) probably_damaging(0.952) TCGA-NJ-A4YQ-01 4 121732566 121732566 T A PRDM5 Nonsense_Mutation p.K302* 0.12 TCGA-NJ-A4YQ-01 4 123171680 123171680 G C KIAA1109 Silent p.R1958R 0.14 TCGA-NJ-A4YQ-01 4 126389833 126389833 G C FAT4 Silent p.R4022R 0.17 TCGA-NJ-A4YQ-01 4 126411546 126411546 G C FAT4 Silent p.L4523L 0.23 TCGA-NJ-A4YQ-01 4 128842778 128842778 G A MFSD8 Silent p.A417A 0.15 TCGA-NJ-A4YQ-01 4 13602464 13602464 T A BOD1L1 Missense_Mutation p.E2020D 0.19 benign(0.03) TCGA-NJ-A4YQ-01 4 13605278 13605278 C A BOD1L1 Missense_Mutation p.M1082I 0.11 benign(0.007) TCGA-NJ-A4YQ-01 4 1373847 1373847 G A UVSSA Silent p.Q527Q 0.17 TCGA-NJ-A4YQ-01 4 1389500 1389500 C T CRIPAK Silent p.L401L 0.14 TCGA-NJ-A4YQ-01 4 156136249 156136249 T A NPY2R 3'UTR 0.11 TCGA-NJ-A4YQ-01 4 160275017 160275017 C T RAPGEF2 Silent p.S1329S 0.06 TCGA-NJ-A4YQ-01 4 166964480 166964480 A T TLL1 Missense_Mutation p.Y478F 0.21 deleterious(0.04) possibly_damaging(0.554) TCGA-NJ-A4YQ-01 4 169606711 169606711 G T PALLD Splice_Site p.X445_splice 0.13 TCGA-NJ-A4YQ-01 4 174216996 174216996 T A GALNT7 Splice_Site p.X322_splice 0.15 TCGA-NJ-A4YQ-01 4 183609476 183609476 G C TENM3 Missense_Mutation p.Q731H 0.17 deleterious(0.01) probably_damaging(0.948) TCGA-NJ-A4YQ-01 4 184606486 184606486 G A TRAPPC11 Silent p.L564L 0.20 TCGA-NJ-A4YQ-01 4 187086525 187086525 C T FAM149A Silent p.S357S 0.28 TCGA-NJ-A4YQ-01 4 189012493 189012493 G T TRIML2 3'UTR 0.13 TCGA-NJ-A4YQ-01 4 1957770 1957770 G A WHSC1 Silent p.K912K 0.15 TCGA-NJ-A4YQ-01 4 20482357 20482357 G T SLIT2 Missense_Mutation p.Q162H 0.15 tolerated(0.55) benign(0.004) TCGA-NJ-A4YQ-01 4 21699070 21699070 C A KCNIP4 Intron 0.11 TCGA-NJ-A4YQ-01 4 22422626 22422626 T A GPR125 Silent p.A564A 0.10 TCGA-NJ-A4YQ-01 4 22749425 22749425 C A GBA3 Missense_Mutation p.P265T 0.13 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YQ-01 4 24572338 24572338 C A DHX15 Missense_Mutation p.G214C 0.12 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 4 30726139 30726139 G C PCDH7 Missense_Mutation p.G1032A 0.16 tolerated(0.25) probably_damaging(0.987) TCGA-NJ-A4YQ-01 4 3432593 3432593 T A RGS12 Missense_Mutation p.L1342Q 0.17 deleterious(0) probably_damaging(0.914) TCGA-NJ-A4YQ-01 4 39105132 39105132 G T KLHL5 Splice_Site p.X555_splice 0.11 TCGA-NJ-A4YQ-01 4 41992738 41992738 C T SLC30A9 Nonsense_Mutation p.R24* 0.19 TCGA-NJ-A4YQ-01 4 4199434 4199434 T A OTOP1 Missense_Mutation p.E376V 0.18 deleterious(0.04) possibly_damaging(0.821) TCGA-NJ-A4YQ-01 4 47625740 47625740 G T CORIN Silent p.A796A 0.15 TCGA-NJ-A4YQ-01 4 47645123 47645123 C A CORIN Intron 0.14 TCGA-NJ-A4YQ-01 4 53492221 53492221 C A USP46 Silent p.T175T 0.13 TCGA-NJ-A4YQ-01 4 54967967 54967967 C A GSX2 Missense_Mutation p.Q265K 0.19 tolerated(0.09) benign(0.024) TCGA-NJ-A4YQ-01 4 55973987 55973987 C G KDR Silent p.L443L 0.12 TCGA-NJ-A4YQ-01 4 55981172 55981172 C A KDR Missense_Mutation p.R176I 0.07 deleterious(0.04) benign(0.042) TCGA-NJ-A4YQ-01 4 57182706 57182706 G T KIAA1211 Missense_Mutation p.R1013L 0.14 tolerated(0.55) benign(0.433) TCGA-NJ-A4YQ-01 4 57182773 57182773 G T KIAA1211 Silent p.A1035A 0.17 TCGA-NJ-A4YQ-01 4 6107499 6107499 C G JAKMIP1 Missense_Mutation p.E109Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 4 65275116 65275116 C A TECRL 5'UTR 0.08 TCGA-NJ-A4YQ-01 4 66213922 66213922 C A EPHA5 Splice_Site p.X837_splice 0.15 TCGA-NJ-A4YQ-01 4 68484845 68484845 T C UBA6 Missense_Mutation p.H1010R 0.13 tolerated(0.57) benign(0.026) TCGA-NJ-A4YQ-01 4 68810257 68810257 G A TMPRSS11A Nonsense_Mutation p.R78* 0.21 TCGA-NJ-A4YQ-01 4 69972945 69972945 G T UGT2B7 Missense_Mutation p.R352L 0.27 deleterious(0) benign(0.409) TCGA-NJ-A4YQ-01 4 71201520 71201520 C T CABS1 Missense_Mutation p.A255V 0.06 tolerated(0.29) benign(0.025) TCGA-NJ-A4YQ-01 4 71250262 71250262 C A SMR3B Missense_Mutation p.A12D 0.22 deleterious_low_confidence(0) unknown(0) TCGA-NJ-A4YQ-01 4 71255663 71255663 C A SMR3B 3'UTR 0.13 TCGA-NJ-A4YQ-01 4 73964199 73964199 T A ANKRD17 Missense_Mutation p.T1538S 0.16 benign(0.176) TCGA-NJ-A4YQ-01 4 74304014 74304014 A T AFP Missense_Mutation p.L87F 0.35 tolerated(0.24) benign(0.052) TCGA-NJ-A4YQ-01 4 76678711 76678711 G T USO1 Nonsense_Mutation p.E92* 0.24 TCGA-NJ-A4YQ-01 4 79832115 79832115 A T BMP2K Missense_Mutation p.D805V 0.22 deleterious_low_confidence(0) unknown(0) TCGA-NJ-A4YQ-01 4 81884677 81884677 C A C4orf22 Missense_Mutation p.P222T 0.25 deleterious(0.01) probably_damaging(0.947) TCGA-NJ-A4YQ-01 4 84015830 84015830 C A PLAC8 3'UTR 0.12 TCGA-NJ-A4YQ-01 4 8603010 8603010 C A CPZ Missense_Mutation p.N94K 0.17 tolerated(0.06) possibly_damaging(0.791) TCGA-NJ-A4YQ-01 4 89358919 89358919 G T HERC6 Silent p.V847V 0.22 TCGA-NJ-A4YQ-01 4 90743487 90743487 C A SNCA Silent p.T72T 0.13 TCGA-NJ-A4YQ-01 4 90816308 90816308 G - MMRN1 Frame_Shift_Del p.A63Rfs*3 0.16 TCGA-NJ-A4YQ-01 4 9784075 9784075 C G DRD5 Missense_Mutation p.A141G 0.07 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 4 9784221 9784221 G T DRD5 Missense_Mutation p.G190W 0.15 deleterious(0) probably_damaging(0.917) TCGA-NJ-A4YQ-01 5 101606405 101606405 C A SLCO4C1 Missense_Mutation p.G242V 0.18 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 5 108713993 108713993 C A PJA2 Nonsense_Mutation p.G399* 0.11 TCGA-NJ-A4YQ-01 5 115319087 115319087 C T AQPEP Missense_Mutation p.H267Y 0.11 deleterious(0.01) possibly_damaging(0.826) TCGA-NJ-A4YQ-01 5 120022193 120022193 G A PRR16 Missense_Mutation p.S212N 0.10 tolerated_low_confidence(0.11) benign(0.015) TCGA-NJ-A4YQ-01 5 127420129 127420129 G T SLC12A2 Silent p.G161G 0.15 TCGA-NJ-A4YQ-01 5 127420130 127420130 G T SLC12A2 Missense_Mutation p.V162F 0.15 tolerated(0.56) benign(0.049) TCGA-NJ-A4YQ-01 5 127729049 127729049 C A FBN2 Missense_Mutation p.R415I 0.16 deleterious(0.03) possibly_damaging(0.568) TCGA-NJ-A4YQ-01 5 127872103 127872103 C A FBN2 Missense_Mutation p.C110F 0.11 deleterious(0) unknown(0) TCGA-NJ-A4YQ-01 5 129070804 129070804 T A ADAMTS19 Splice_Site p.X1158_splice 0.20 TCGA-NJ-A4YQ-01 5 1293519 1293519 G A TERT Silent p.F494F 0.14 TCGA-NJ-A4YQ-01 5 129520436 129520436 G T CHSY3 Missense_Mutation p.G534V 0.19 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 5 130840330 130840330 T C RAPGEF6 Missense_Mutation p.I415V 0.13 tolerated(0.48) probably_damaging(0.996) TCGA-NJ-A4YQ-01 5 135228050 135228050 T A IL9 3'UTR 0.17 TCGA-NJ-A4YQ-01 5 136328288 136328288 G T SPOCK1 Silent p.A197A 0.12 TCGA-NJ-A4YQ-01 5 137680774 137680774 G T FAM53C Missense_Mutation p.V133L 0.11 tolerated(0.74) benign(0.013) TCGA-NJ-A4YQ-01 5 13776555 13776555 T G DNAH5 Missense_Mutation p.L3122F 0.10 possibly_damaging(0.849) TCGA-NJ-A4YQ-01 5 13794062 13794062 T A DNAH5 Missense_Mutation p.N2665Y 0.19 possibly_damaging(0.904) TCGA-NJ-A4YQ-01 5 140167716 140167716 C A PCDHA1 Missense_Mutation p.A614E 0.15 tolerated_low_confidence(0.19) benign(0.082) TCGA-NJ-A4YQ-01 5 140222311 140222311 C A PCDHA8 Missense_Mutation p.P469T 0.09 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-NJ-A4YQ-01 5 140237825 140237825 G T PCDHA10 Missense_Mutation p.G731V 0.11 tolerated_low_confidence(0.05) benign(0.022) TCGA-NJ-A4YQ-01 5 140308176 140308176 G T PCDHAC1 Missense_Mutation p.V567L 0.11 tolerated(0.26) benign(0.132) TCGA-NJ-A4YQ-01 5 140503192 140503192 C A PCDHB4 Missense_Mutation p.P538T 0.14 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-NJ-A4YQ-01 5 140516075 140516075 C A PCDHB5 Missense_Mutation p.S353R 0.13 deleterious_low_confidence(0.02) benign(0.069) TCGA-NJ-A4YQ-01 5 140530449 140530449 A T PCDHB6 Missense_Mutation p.Q204L 0.10 deleterious(0.05) benign(0.011) TCGA-NJ-A4YQ-01 5 140554388 140554388 C A PCDHB7 Missense_Mutation p.L658M 0.07 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-NJ-A4YQ-01 5 140564179 140564179 A T PCDHB16 Missense_Mutation p.Q682L 0.15 deleterious_low_confidence(0.02) benign(0.075) TCGA-NJ-A4YQ-01 5 140579690 140579690 C T PCDHB11 Nonsense_Mutation p.Q115* 0.11 TCGA-NJ-A4YQ-01 5 140579691 140579691 A T PCDHB11 Missense_Mutation p.Q115L 0.12 deleterious_low_confidence(0) benign(0.018) TCGA-NJ-A4YQ-01 5 140625750 140625750 C G PCDHB15 Missense_Mutation p.R202G 0.14 deleterious_low_confidence(0) benign(0.251) TCGA-NJ-A4YQ-01 5 140626974 140626974 A T PCDHB15 Missense_Mutation p.T610S 0.19 tolerated_low_confidence(0.07) possibly_damaging(0.607) TCGA-NJ-A4YQ-01 5 140712169 140712169 C A PCDHGA1 Missense_Mutation p.Q640K 0.16 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-NJ-A4YQ-01 5 140719419 140719419 T A PCDHGA2 Missense_Mutation p.L294H 0.09 deleterious_low_confidence(0) probably_damaging(1) TCGA-NJ-A4YQ-01 5 140720216 140720216 C A PCDHGA2 Missense_Mutation p.P560T 0.12 deleterious_low_confidence(0) probably_damaging(0.948) TCGA-NJ-A4YQ-01 5 140730107 140730107 G A PCDHGB1 Missense_Mutation p.G94R 0.12 tolerated(0.07) possibly_damaging(0.73) TCGA-NJ-A4YQ-01 5 140730891 140730891 A G PCDHGB1 Missense_Mutation p.D355G 0.12 deleterious(0.04) benign(0.168) TCGA-NJ-A4YQ-01 5 140732048 140732048 G T PCDHGB1 Nonsense_Mutation p.E741* 0.16 TCGA-NJ-A4YQ-01 5 140754042 140754042 C A PCDHGA6 Missense_Mutation p.P131H 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 5 140774264 140774264 G T PCDHGA8 Silent p.T628T 0.15 TCGA-NJ-A4YQ-01 5 140783658 140783658 G T PCDHGA9 Missense_Mutation p.G380V 0.10 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-NJ-A4YQ-01 5 140783930 140783930 A G PCDHGA9 Missense_Mutation p.I471V 0.17 tolerated_low_confidence(0.05) benign(0.401) TCGA-NJ-A4YQ-01 5 140812204 140812204 G T PCDHGA12 Silent p.V626V 0.14 TCGA-NJ-A4YQ-01 5 140812537 140812537 G T PCDHGA12 Silent p.A737A 0.15 TCGA-NJ-A4YQ-01 5 141049581 141049581 T C ARAP3 Silent p.A719A 0.15 TCGA-NJ-A4YQ-01 5 14291249 14291249 G T TRIO Missense_Mutation p.R322L 0.16 probably_damaging(0.968) TCGA-NJ-A4YQ-01 5 14291250 14291250 G T TRIO Silent p.R322R 0.18 TCGA-NJ-A4YQ-01 5 145838472 145838472 G T TCERG1 Missense_Mutation p.R155L 0.14 deleterious(0.05) possibly_damaging(0.871) TCGA-NJ-A4YQ-01 5 147493975 147493976 CA - SPINK5 Frame_Shift_Del p.T647Kfs*4 0.11 TCGA-NJ-A4YQ-01 5 148748018 148748018 G T PCYOX1L Missense_Mutation p.G429V 0.12 tolerated(0.16) possibly_damaging(0.784) TCGA-NJ-A4YQ-01 5 149216290 149216290 C A PPARGC1B Missense_Mutation p.H758N 0.11 deleterious(0.04) possibly_damaging(0.864) TCGA-NJ-A4YQ-01 5 149278032 149278032 G T PDE6A Missense_Mutation p.P434H 0.10 deleterious(0) benign(0.241) TCGA-NJ-A4YQ-01 5 149360151 149360151 C T SLC26A2 Missense_Mutation p.P332L 0.09 deleterious(0.02) probably_damaging(1) TCGA-NJ-A4YQ-01 5 150666833 150666833 C T SLC36A3 Missense_Mutation p.A269T 0.13 tolerated(0.09) benign(0.059) TCGA-NJ-A4YQ-01 5 154174747 154174747 C G LARP1 Missense_Mutation p.F338L 0.08 deleterious(0) probably_damaging(0.994) TCGA-NJ-A4YQ-01 5 154394946 154394946 C T KIF4B Silent p.D509D 0.16 TCGA-NJ-A4YQ-01 5 156899946 156899946 A T NIPAL4 Missense_Mutation p.K460I 0.11 deleterious(0.03) possibly_damaging(0.677) TCGA-NJ-A4YQ-01 5 156917346 156917346 G A ADAM19 Missense_Mutation p.L738F 0.15 tolerated(0.56) possibly_damaging(0.89) TCGA-NJ-A4YQ-01 5 157073663 157073663 G T SOX30 Missense_Mutation p.P457T 0.13 tolerated(1) benign(0.001) TCGA-NJ-A4YQ-01 5 158585501 158585501 C A RNF145 3'UTR 0.22 TCGA-NJ-A4YQ-01 5 15928159 15928159 C A FBXL7 Silent p.L96L 0.12 TCGA-NJ-A4YQ-01 5 159839521 159839521 T C SLU7 Silent p.K192K 0.08 TCGA-NJ-A4YQ-01 5 160097606 160097606 C G ATP10B Missense_Mutation p.C180S 0.18 deleterious(0.04) possibly_damaging(0.773) TCGA-NJ-A4YQ-01 5 161119046 161119046 T A GABRA6 Missense_Mutation p.V309D 0.15 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 5 161128767 161128767 C T GABRA6 Silent p.S450S 0.15 TCGA-NJ-A4YQ-01 5 161520890 161520890 G C GABRG2 Missense_Mutation p.W55S 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-NJ-A4YQ-01 5 16177988 16177988 A T MARCH11 Silent p.G180G 0.11 TCGA-NJ-A4YQ-01 5 16701632 16701632 C A MYO10 Nonsense_Mutation p.E958* 0.13 TCGA-NJ-A4YQ-01 5 167419981 167419981 C A TENM2 Missense_Mutation p.T327K 0.12 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 5 167617511 167617511 T A TENM2 Missense_Mutation p.D913E 0.16 tolerated(0.27) benign(0.012) TCGA-NJ-A4YQ-01 5 169186775 169186775 C G DOCK2 Missense_Mutation p.L815V 0.13 deleterious(0) probably_damaging(0.983) TCGA-NJ-A4YQ-01 5 169468076 169468076 G T DOCK2 Missense_Mutation p.R1228L 0.11 tolerated(0.7) benign(0.282) TCGA-NJ-A4YQ-01 5 169484669 169484669 A T DOCK2 Missense_Mutation p.Q1489L 0.15 tolerated(0.19) benign(0.004) TCGA-NJ-A4YQ-01 5 170216196 170216196 T C GABRP Silent p.P39P 0.15 TCGA-NJ-A4YQ-01 5 175530244 175530244 G T FAM153B Missense_Mutation p.V150L 0.07 tolerated_low_confidence(0.29) benign(0.198) TCGA-NJ-A4YQ-01 5 176323127 176323127 C T HK3 Missense_Mutation p.G12R 0.17 tolerated_low_confidence(0.41) benign(0.002) TCGA-NJ-A4YQ-01 5 176831522 176831522 G T F12 Missense_Mutation p.L260M 0.33 deleterious(0) probably_damaging(0.988) TCGA-NJ-A4YQ-01 5 178553074 178553074 C A ADAMTS2 Missense_Mutation p.R892L 0.18 deleterious(0.01) possibly_damaging(0.697) TCGA-NJ-A4YQ-01 5 179674444 179674444 G A MAPK9 Missense_Mutation p.T228I 0.13 deleterious(0.02) benign(0.012) TCGA-NJ-A4YQ-01 5 180043473 180043473 A T FLT4 Missense_Mutation p.L1038Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 5 19483538 19483538 G T CDH18 Missense_Mutation p.T585N 0.20 deleterious(0) possibly_damaging(0.843) TCGA-NJ-A4YQ-01 5 31318052 31318052 T A CDH6 Intron 0.18 TCGA-NJ-A4YQ-01 5 32098644 32098644 A T PDZD2 Missense_Mutation p.M2708L 0.27 tolerated(0.25) benign(0.001) TCGA-NJ-A4YQ-01 5 35670180 35670180 A T SPEF2 Missense_Mutation p.M459L 0.13 deleterious(0.01) possibly_damaging(0.814) TCGA-NJ-A4YQ-01 5 35921198 35921198 G T CAPSL Silent p.R9R 0.11 TCGA-NJ-A4YQ-01 5 36066972 36066972 C G UGT3A2 5'UTR 0.21 TCGA-NJ-A4YQ-01 5 38407103 38407103 T C EGFLAM Silent p.N334N 0.11 TCGA-NJ-A4YQ-01 5 39202744 39202744 C A FYB Missense_Mutation p.V117L 0.23 tolerated(0.06) benign(0.027) TCGA-NJ-A4YQ-01 5 39202745 39202745 T A FYB Missense_Mutation p.K116N 0.24 tolerated(0.05) possibly_damaging(0.735) TCGA-NJ-A4YQ-01 5 43039635 43039635 C A ANXA2R Missense_Mutation p.V172F 0.09 deleterious_low_confidence(0.03) benign(0.075) TCGA-NJ-A4YQ-01 5 43446306 43446307 - T C5orf28 3'UTR 0.09 TCGA-NJ-A4YQ-01 5 482774 482774 G T SLC9A3 Silent p.R415R 0.12 TCGA-NJ-A4YQ-01 5 52374657 52374657 G A ITGA2 Missense_Mutation p.V961M 0.08 tolerated(0.06) probably_damaging(0.919) TCGA-NJ-A4YQ-01 5 5318377 5318377 C A ADAMTS16 Missense_Mutation p.P1181H 0.14 deleterious(0) possibly_damaging(0.823) TCGA-NJ-A4YQ-01 5 53814547 53814547 G T SNX18 Silent p.G255G 0.07 TCGA-NJ-A4YQ-01 5 56219845 56219845 A G MIER3 Missense_Mutation p.C316R 0.09 deleterious(0.04) benign(0.429) TCGA-NJ-A4YQ-01 5 60189225 60189225 C A ERCC8 Intron 0.12 TCGA-NJ-A4YQ-01 5 71491580 71491580 G T MAP1B Missense_Mutation p.G800C 0.16 unknown(0) TCGA-NJ-A4YQ-01 5 71756846 71756846 C A ZNF366 Missense_Mutation p.V160L 0.06 tolerated_low_confidence(0.31) benign(0.001) TCGA-NJ-A4YQ-01 5 75428131 75428131 C G SV2C Missense_Mutation p.P186A 0.10 deleterious(0.04) possibly_damaging(0.771) TCGA-NJ-A4YQ-01 5 75490886 75490886 T C SV2C Silent p.Y241Y 0.11 TCGA-NJ-A4YQ-01 5 75490924 75490924 G T SV2C Missense_Mutation p.G254V 0.12 deleterious(0) probably_damaging(0.959) TCGA-NJ-A4YQ-01 5 75967608 75967608 C T IQGAP2 Silent p.D956D 0.06 TCGA-NJ-A4YQ-01 5 75978942 75978942 C A IQGAP2 Silent p.L1221L 0.19 TCGA-NJ-A4YQ-01 5 76251488 76251488 G T CRHBP Missense_Mutation p.G115V 0.09 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 5 76359005 76359005 A G AGGF1 Silent p.E691E 0.16 TCGA-NJ-A4YQ-01 5 7892985 7892985 C A MTRR Missense_Mutation p.H533N 0.13 tolerated(0.63) benign(0) TCGA-NJ-A4YQ-01 5 7900080 7900080 G T MTRR Missense_Mutation p.S696I 0.10 deleterious(0.03) possibly_damaging(0.721) TCGA-NJ-A4YQ-01 5 82817222 82817222 G T VCAN Nonsense_Mutation p.E1033* 0.17 TCGA-NJ-A4YQ-01 5 82835668 82835668 A G VCAN Silent p.T2282T 0.13 TCGA-NJ-A4YQ-01 5 83356239 83356239 G T EDIL3 Missense_Mutation p.S339R 0.10 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 5 83525697 83525697 C T EDIL3 Missense_Mutation p.D68N 0.11 tolerated_low_confidence(0.63) benign(0.009) TCGA-NJ-A4YQ-01 5 9052056 9052056 G A SEMA5A Missense_Mutation p.P925L 0.12 deleterious(0.04) probably_damaging(1) TCGA-NJ-A4YQ-01 6 102483429 102483429 G T GRIK2 Missense_Mutation p.G767C 0.15 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 6 105231977 105231977 T A HACE1 Missense_Mutation p.H517L 0.14 deleterious(0.01) benign(0.102) TCGA-NJ-A4YQ-01 6 107955117 107955117 G T SOBP Nonsense_Mutation p.E357* 0.19 TCGA-NJ-A4YQ-01 6 109767479 109767479 T G MICAL1 Missense_Mutation p.Q814P 0.11 tolerated(0.29) benign(0.105) TCGA-NJ-A4YQ-01 6 109767562 109767562 T A MICAL1 Silent p.T786T 0.17 TCGA-NJ-A4YQ-01 6 111067334 111067334 T C CDK19 Missense_Mutation p.I67V 0.21 tolerated(0.07) benign(0.12) TCGA-NJ-A4YQ-01 6 112460954 112460954 C A LAMA4 Missense_Mutation p.R1037L 0.14 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 6 118596723 118596723 G T SLC35F1 Missense_Mutation p.V247L 0.12 tolerated(0.1) benign(0.081) TCGA-NJ-A4YQ-01 6 128319902 128319902 T A PTPRK Missense_Mutation p.K881M 0.16 deleterious(0) probably_damaging(0.994) TCGA-NJ-A4YQ-01 6 129498910 129498910 T A LAMA2 Missense_Mutation p.C456S 0.11 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 6 132781941 132781941 C A STX7 Nonsense_Mutation p.G248* 0.07 TCGA-NJ-A4YQ-01 6 133055416 133055416 C T VNN3 Nonsense_Mutation p.W107* 0.15 TCGA-NJ-A4YQ-01 6 133078932 133078932 A T VNN2 Missense_Mutation p.Y31N 0.15 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 6 136582546 136582546 C A BCLAF1 Missense_Mutation p.G872C 0.05 deleterious(0) probably_damaging(0.984) TCGA-NJ-A4YQ-01 6 136600952 136600952 T A BCLAF1 Missense_Mutation p.Q18L 0.07 deleterious_low_confidence(0.01) unknown(0) TCGA-NJ-A4YQ-01 6 136681912 136681912 C A MAP7 Nonsense_Mutation p.E598* 0.13 TCGA-NJ-A4YQ-01 6 138428378 138428378 C A PERP Missense_Mutation p.G34C 0.17 deleterious(0) probably_damaging(0.938) TCGA-NJ-A4YQ-01 6 144783812 144783812 A T UTRN Missense_Mutation p.N959I 0.11 tolerated(0.05) benign(0.258) TCGA-NJ-A4YQ-01 6 145115049 145115049 G C UTRN Missense_Mutation p.Q3000H 0.15 deleterious(0) probably_damaging(0.988) TCGA-NJ-A4YQ-01 6 151671717 151671717 G A AKAP12 Missense_Mutation p.G731S 0.13 tolerated(1) benign(0.004) TCGA-NJ-A4YQ-01 6 157527757 157527757 G T ARID1B Nonsense_Mutation p.E1828* 0.13 TCGA-NJ-A4YQ-01 6 157527821 157527821 C T ARID1B Missense_Mutation p.P1849L 0.10 benign(0.228) TCGA-NJ-A4YQ-01 6 160523633 160523633 G T IGF2R Missense_Mutation p.V2309L 0.18 deleterious(0.04) benign(0.011) TCGA-NJ-A4YQ-01 6 160679600 160679600 C A SLC22A2 Missense_Mutation p.G64C 0.15 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 6 163984649 163984649 G T QKI Missense_Mutation p.G278W 0.11 deleterious(0) possibly_damaging(0.493) TCGA-NJ-A4YQ-01 6 165715087 165715087 C A C6orf118 Missense_Mutation p.A242S 0.10 tolerated(0.19) possibly_damaging(0.654) TCGA-NJ-A4YQ-01 6 166580164 166580164 C G T Silent p.S129S 0.13 TCGA-NJ-A4YQ-01 6 167417874 167417874 G T FGFR1OP Silent p.G141G 0.16 TCGA-NJ-A4YQ-01 6 169629707 169629707 C A THBS2 Missense_Mutation p.C740F 0.14 deleterious(0) probably_damaging(0.987) TCGA-NJ-A4YQ-01 6 169632152 169632152 C A THBS2 Missense_Mutation p.G692W 0.09 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 6 170886617 170886617 A G PDCD2 3'UTR 0.12 TCGA-NJ-A4YQ-01 6 17629326 17629326 G A NUP153 Missense_Mutation p.P1035L 0.18 deleterious(0.05) benign(0) TCGA-NJ-A4YQ-01 6 24651011 24651011 G T TDP2 3'UTR 0.07 TCGA-NJ-A4YQ-01 6 25727522 25727522 C G HIST1H2BA 3'UTR 0.16 TCGA-NJ-A4YQ-01 6 25926062 25926062 G C SLC17A2 5'UTR 0.21 TCGA-NJ-A4YQ-01 6 26370772 26370772 C T BTN3A2 Missense_Mutation p.S219F 0.09 deleterious(0.01) probably_damaging(0.99) TCGA-NJ-A4YQ-01 6 32629851 32629851 C A HLA-DQB1 Missense_Mutation p.W185L 0.22 deleterious(0.01) possibly_damaging(0.734) TCGA-NJ-A4YQ-01 6 33374037 33374037 G T KIFC1 Missense_Mutation p.R534L 0.18 deleterious(0) probably_damaging(0.961) TCGA-NJ-A4YQ-01 6 33695901 33695901 A C IP6K3 Missense_Mutation p.W126G 0.13 tolerated(0.34) benign(0.287) TCGA-NJ-A4YQ-01 6 34003718 34003718 G T GRM4 Silent p.S723S 0.17 TCGA-NJ-A4YQ-01 6 348194 348194 C A DUSP22 Missense_Mutation p.R119S 0.08 deleterious(0) probably_damaging(0.925) TCGA-NJ-A4YQ-01 6 350715 350715 A T DUSP22 Intron 0.10 TCGA-NJ-A4YQ-01 6 36946279 36946279 A T MTCH1 Splice_Site p.X171_splice 0.19 TCGA-NJ-A4YQ-01 6 398864 398864 C A IRF4 Missense_Mutation p.P225Q 0.26 deleterious(0.05) possibly_damaging(0.817) TCGA-NJ-A4YQ-01 6 40400678 40400678 G T LRFN2 Missense_Mutation p.L59M 0.09 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 6 43273595 43273595 A G CRIP3 Missense_Mutation p.V191A 0.14 tolerated(0.4) probably_damaging(0.994) TCGA-NJ-A4YQ-01 6 45514706 45514706 C A RUNX2 Silent p.L410L 0.20 TCGA-NJ-A4YQ-01 6 47641198 47641198 C T GPR111 Intron 0.11 TCGA-NJ-A4YQ-01 6 47847253 47847253 G T PTCHD4 Missense_Mutation p.H443N 0.25 tolerated(0.79) benign(0) TCGA-NJ-A4YQ-01 6 52133973 52133973 C A MCM3 Missense_Mutation p.A672S 0.14 deleterious(0.03) probably_damaging(0.962) TCGA-NJ-A4YQ-01 6 56357081 56357081 G A DST Nonsense_Mutation p.Q4278* 0.18 TCGA-NJ-A4YQ-01 6 56535549 56535549 C T DST Silent p.L157L 0.17 TCGA-NJ-A4YQ-01 6 6145947 6145947 C A F13A1 Missense_Mutation p.G702W 0.25 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 6 69703720 69703720 A T BAI3 Missense_Mutation p.T599S 0.09 deleterious(0) possibly_damaging(0.793) TCGA-NJ-A4YQ-01 6 70970394 70970394 C A COL9A1 Missense_Mutation p.G472V 0.16 probably_damaging(0.974) TCGA-NJ-A4YQ-01 6 71562245 71562245 G T SMAP1 Missense_Mutation p.G223C 0.18 deleterious(0.01) probably_damaging(0.947) TCGA-NJ-A4YQ-01 6 71603914 71603914 T C B3GAT2 Missense_Mutation p.E218G 0.11 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 6 7229617 7229617 G T RREB1 Missense_Mutation p.A429S 0.13 tolerated(0.75) possibly_damaging(0.551) TCGA-NJ-A4YQ-01 6 83843957 83843957 A G DOPEY1 Missense_Mutation p.R941G 0.22 deleterious(0) benign(0.405) TCGA-NJ-A4YQ-01 6 84233788 84233788 G T PRSS35 Missense_Mutation p.A210S 0.15 tolerated(0.44) benign(0.328) TCGA-NJ-A4YQ-01 6 90605358 90605358 G T GJA10 Missense_Mutation p.D391Y 0.19 tolerated(0.07) benign(0.316) TCGA-NJ-A4YQ-01 6 97677144 97677144 C T MMS22L Silent p.L555L 0.16 TCGA-NJ-A4YQ-01 7 100184122 100184122 T A FBXO24 5'Flank 0.31 TCGA-NJ-A4YQ-01 7 100608750 100608750 C T MUC3A Missense_Mutation p.P710L 0.15 deleterious(0.03) possibly_damaging(0.791) TCGA-NJ-A4YQ-01 7 100859293 100859293 C A PLOD3 Missense_Mutation p.G171C 0.38 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 7 103206706 103206706 G A RELN Missense_Mutation p.S1634F 0.26 deleterious(0) probably_damaging(0.997) TCGA-NJ-A4YQ-01 7 106513170 106513170 G T PIK3CG Missense_Mutation p.G692C 0.47 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 7 107866784 107866784 C T NRCAM Missense_Mutation p.G197S 0.33 tolerated(0.17) probably_damaging(1) TCGA-NJ-A4YQ-01 7 112462131 112462131 C G C7orf60 Missense_Mutation p.A296P 0.17 deleterious(0.01) probably_damaging(0.985) TCGA-NJ-A4YQ-01 7 114298197 114298197 C T FOXP2 Missense_Mutation p.T473I 0.14 deleterious(0.01) unknown(0) TCGA-NJ-A4YQ-01 7 11581097 11581097 C A THSD7A Nonsense_Mutation p.E591* 0.09 TCGA-NJ-A4YQ-01 7 121623874 121623874 C A PTPRZ1 Missense_Mutation p.Q259K 0.10 deleterious(0) probably_damaging(0.957) TCGA-NJ-A4YQ-01 7 121676729 121676729 A C PTPRZ1 Missense_Mutation p.Y1787S 0.14 deleterious(0) probably_damaging(0.934) TCGA-NJ-A4YQ-01 7 121694040 121694040 T C PTPRZ1 Missense_Mutation p.I2110T 0.15 deleterious(0) possibly_damaging(0.858) TCGA-NJ-A4YQ-01 7 127014562 127014562 T A ZNF800 Silent p.G276G 0.09 TCGA-NJ-A4YQ-01 7 127729633 127729633 C - SND1 Frame_Shift_Del p.H839Mfs*18 0.21 TCGA-NJ-A4YQ-01 7 128470785 128470785 G T FLNC Missense_Mutation p.A32S 0.15 deleterious(0) possibly_damaging(0.495) TCGA-NJ-A4YQ-01 7 129919446 129919446 C A CPA2 Missense_Mutation p.L311M 0.12 tolerated(0.5) probably_damaging(1) TCGA-NJ-A4YQ-01 7 129989906 129989906 G T CPA5 Nonsense_Mutation p.E97* 0.15 TCGA-NJ-A4YQ-01 7 130370096 130370096 G T TSGA13 5'UTR 0.13 TCGA-NJ-A4YQ-01 7 131865425 131865425 C T PLXNA4 Missense_Mutation p.E1187K 0.13 tolerated(0.28) possibly_damaging(0.676) TCGA-NJ-A4YQ-01 7 134260639 134260639 G A AKR1B15 Missense_Mutation p.V235I 0.06 tolerated(0.35) benign(0.069) TCGA-NJ-A4YQ-01 7 137237295 137237295 C G DGKI Missense_Mutation p.G656A 0.08 deleterious(0.04) probably_damaging(0.921) TCGA-NJ-A4YQ-01 7 138264108 138264108 G T TRIM24 Missense_Mutation p.D806Y 0.13 deleterious(0.03) benign(0.176) TCGA-NJ-A4YQ-01 7 138391432 138391432 C T ATP6V0A4 Silent p.G820G 0.07 TCGA-NJ-A4YQ-01 7 141536276 141536276 G T PRSS37 Missense_Mutation p.H209Q 0.13 tolerated(0.18) benign(0.064) TCGA-NJ-A4YQ-01 7 141536288 141536288 G A PRSS37 Silent p.I205I 0.12 TCGA-NJ-A4YQ-01 7 142001045 142001045 C A TRBV2 Missense_Mutation p.S13Y 0.21 TCGA-NJ-A4YQ-01 7 142099481 142099481 G T TRBV7-8 Silent p.A107A 0.10 TCGA-NJ-A4YQ-01 7 142231813 142231813 C A TRBV10-1 Missense_Mutation p.G35V 0.18 deleterious(0) probably_damaging(0.969) TCGA-NJ-A4YQ-01 7 142231995 142231995 C A TRBV10-1 Missense_Mutation p.A10S 0.11 tolerated(0.11) benign(0.06) TCGA-NJ-A4YQ-01 7 142326467 142326467 T C TRBV19 5'UTR 0.27 TCGA-NJ-A4YQ-01 7 142494944 142494944 T A TRBJ2-6 Silent p.T8T 0.14 TCGA-NJ-A4YQ-01 7 142562313 142562313 G T EPHB6 Missense_Mutation p.G252V 0.20 deleterious(0.02) possibly_damaging(0.856) TCGA-NJ-A4YQ-01 7 142575695 142575695 C T TRPV6 Silent p.K71K 0.11 TCGA-NJ-A4YQ-01 7 142625849 142625849 G T TRPV5 Missense_Mutation p.D233E 0.10 tolerated(0.75) benign(0.002) TCGA-NJ-A4YQ-01 7 142658450 142658450 G C KEL Missense_Mutation p.P74A 0.07 tolerated(0.1) probably_damaging(0.972) TCGA-NJ-A4YQ-01 7 143028323 143028323 A T CLCN1 Splice_Site p.X327_splice 0.14 TCGA-NJ-A4YQ-01 7 143141151 143141151 G C TAS2R60 Missense_Mutation p.W202C 0.12 tolerated(0.09) probably_damaging(0.911) TCGA-NJ-A4YQ-01 7 143771913 143771913 G A OR2A25 Missense_Mutation p.G201R 0.11 deleterious(0.03) benign(0.424) TCGA-NJ-A4YQ-01 7 146997236 146997237 - T CNTNAP2 Frame_Shift_Ins p.G452Wfs*4 0.08 TCGA-NJ-A4YQ-01 7 147869345 147869345 G A CNTNAP2 Missense_Mutation p.G929S 0.10 tolerated(0.6) possibly_damaging(0.451) TCGA-NJ-A4YQ-01 7 147914554 147914554 G T CNTNAP2 Missense_Mutation p.C1062F 0.14 deleterious(0) possibly_damaging(0.611) TCGA-NJ-A4YQ-01 7 149152289 149152289 G C ZNF777 Silent p.G275G 0.13 TCGA-NJ-A4YQ-01 7 149430453 149430453 C A KRBA1 Missense_Mutation p.H803N 0.11 deleterious(0.03) possibly_damaging(0.888) TCGA-NJ-A4YQ-01 7 149502645 149502645 G T SSPO RNA 0.12 TCGA-NJ-A4YQ-01 7 149517985 149517985 G T SSPO RNA 0.21 TCGA-NJ-A4YQ-01 7 150656845 150656846 - C KCNH2 Intron 0.10 TCGA-NJ-A4YQ-01 7 150767561 150767561 A T SLC4A2 Silent p.P489P 0.13 TCGA-NJ-A4YQ-01 7 154143307 154143307 G T DPP6 Silent p.V84V 0.15 TCGA-NJ-A4YQ-01 7 154785453 154785453 C G PAXIP1 Missense_Mutation p.Q81H 0.15 deleterious(0.02) benign(0.213) TCGA-NJ-A4YQ-01 7 154862996 154862996 C G HTR5A-AS1 Missense_Mutation p.Q6H 0.14 deleterious_low_confidence(0.02) benign(0.387) TCGA-NJ-A4YQ-01 7 158534326 158534326 G A ESYT2 Silent p.L713L 0.18 TCGA-NJ-A4YQ-01 7 19184459 19184459 G T FERD3L 3'UTR 0.19 TCGA-NJ-A4YQ-01 7 19738309 19738309 T A TWISTNB Missense_Mutation p.E216V 0.10 tolerated(0.06) benign(0.007) TCGA-NJ-A4YQ-01 7 2260537 2260537 C A MAD1L1 Intron 0.11 TCGA-NJ-A4YQ-01 7 23306147 23306147 G T GPNMB Missense_Mutation p.D356Y 0.12 tolerated(0.08) benign(0.003) TCGA-NJ-A4YQ-01 7 27134297 27134297 G C HOXA1 Missense_Mutation p.A257G 0.09 deleterious(0) probably_damaging(0.971) TCGA-NJ-A4YQ-01 7 27141788 27141788 G A HOXA2 Missense_Mutation p.P111L 0.25 deleterious(0.02) benign(0.002) TCGA-NJ-A4YQ-01 7 30492002 30492002 C A NOD1 Missense_Mutation p.R344L 0.17 deleterious(0) possibly_damaging(0.674) TCGA-NJ-A4YQ-01 7 31682724 31682725 TG - CCDC129 Frame_Shift_Del p.V607Efs*3 0.16 TCGA-NJ-A4YQ-01 7 38433709 38433709 C A AMPH Missense_Mutation p.G502W 0.14 deleterious(0) possibly_damaging(0.686) TCGA-NJ-A4YQ-01 7 38785214 38785214 C T VPS41 Splice_Site p.X643_splice 0.10 TCGA-NJ-A4YQ-01 7 42005001 42005001 C A GLI3 Missense_Mutation p.G1224C 0.11 tolerated_low_confidence(0.1) benign(0.018) TCGA-NJ-A4YQ-01 7 43351506 43351507 - T HECW1 Frame_Shift_Ins p.H58Lfs*14 0.14 TCGA-NJ-A4YQ-01 7 44152230 44152230 G C AEBP1 Missense_Mutation p.G764A 0.16 deleterious(0.01) probably_damaging(0.923) TCGA-NJ-A4YQ-01 7 44180571 44180571 C A MYL7 Nonsense_Mutation p.E36* 0.10 TCGA-NJ-A4YQ-01 7 44524564 44524564 C A NUDCD3 Intron 0.18 TCGA-NJ-A4YQ-01 7 45216964 45216964 C A RAMP3 Missense_Mutation p.L39M 0.08 tolerated(0.23) benign(0.079) TCGA-NJ-A4YQ-01 7 45797685 45797685 T G SEPT7P2 RNA 0.17 TCGA-NJ-A4YQ-01 7 48285610 48285610 G T ABCA13 Missense_Mutation p.G548C 0.11 possibly_damaging(0.72) TCGA-NJ-A4YQ-01 7 48318231 48318231 T A ABCA13 Silent p.G2480G 0.17 TCGA-NJ-A4YQ-01 7 50467635 50467635 C G IKZF1 Missense_Mutation p.D248E 0.15 tolerated(0.18) benign(0.022) TCGA-NJ-A4YQ-01 7 51096452 51096452 C G COBL Missense_Mutation p.G781R 0.13 tolerated(0.06) benign(0.312) TCGA-NJ-A4YQ-01 7 5270471 5270471 A G WIPI2 Missense_Mutation p.T420A 0.12 tolerated(0.11) benign(0) TCGA-NJ-A4YQ-01 7 57187721 57187721 A G ZNF479 Silent p.C467C 0.11 TCGA-NJ-A4YQ-01 7 64439642 64439642 G A ZNF117 Missense_Mutation p.H103Y 0.23 tolerated(0.07) benign(0.013) TCGA-NJ-A4YQ-01 7 66771021 66771021 A C STAG3L4 RNA 0.15 TCGA-NJ-A4YQ-01 7 6732169 6732169 T C ZNF12 Missense_Mutation p.Y135C 0.11 tolerated(0.21) benign(0.002) TCGA-NJ-A4YQ-01 7 70228239 70228239 C A AUTS2 Missense_Mutation p.P376T 0.15 tolerated(0.06) probably_damaging(0.998) TCGA-NJ-A4YQ-01 7 7612383 7612383 G T MIOS Missense_Mutation p.G93C 0.10 deleterious(0) probably_damaging(0.982) TCGA-NJ-A4YQ-01 7 81374413 81374413 C A HGF Nonsense_Mutation p.E217* 0.52 TCGA-NJ-A4YQ-01 7 88423890 88423890 C G C7orf62 Missense_Mutation p.V123L 0.32 tolerated(0.07) benign(0) TCGA-NJ-A4YQ-01 7 90377088 90377088 C A CDK14 Missense_Mutation p.S136R 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-NJ-A4YQ-01 7 92015842 92015842 G T ANKIB1 Missense_Mutation p.W546L 0.33 deleterious(0) probably_damaging(0.996) TCGA-NJ-A4YQ-01 7 93518518 93518518 G - TFPI2 Frame_Shift_Del p.R97Gfs*4 0.21 TCGA-NJ-A4YQ-01 7 96650103 96650103 G T DLX5 Missense_Mutation p.P272Q 0.31 tolerated(1) benign(0) TCGA-NJ-A4YQ-01 7 98522798 98522798 G T TRRAP Missense_Mutation p.A963S 0.24 benign(0.175) TCGA-NJ-A4YQ-01 7 98956026 98956026 C T ARPC1A Silent p.S259S 0.25 TCGA-NJ-A4YQ-01 7 99764146 99764146 G A GAL3ST4 Silent p.H136H 0.31 TCGA-NJ-A4YQ-01 8 101020743 101020743 G A RGS22 Nonsense_Mutation p.Q741* 0.21 TCGA-NJ-A4YQ-01 8 10383104 10383104 G C PRSS55 Silent p.L3L 0.11 TCGA-NJ-A4YQ-01 8 104831779 104831780 CT A RIMS2 Intron 0.13 TCGA-NJ-A4YQ-01 8 105360819 105360819 T C DCSTAMP Silent p.S13S 0.11 TCGA-NJ-A4YQ-01 8 105361219 105361219 G A DCSTAMP Missense_Mutation p.A147T 0.16 deleterious(0.01) probably_damaging(0.971) TCGA-NJ-A4YQ-01 8 105361774 105361774 C - DCSTAMP Frame_Shift_Del p.P332Qfs*7 0.09 TCGA-NJ-A4YQ-01 8 106813842 106813842 C T ZFPM2 Missense_Mutation p.P511L 0.16 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 8 11281863 11281863 C A FAM167A 3'UTR 0.16 TCGA-NJ-A4YQ-01 8 113267542 113267542 G T CSMD3 Nonsense_Mutation p.S3326* 0.16 TCGA-NJ-A4YQ-01 8 113812480 113812480 T A CSMD3 Missense_Mutation p.D628V 0.17 deleterious(0) probably_damaging(0.935) TCGA-NJ-A4YQ-01 8 121309824 121309824 C A COL14A1 Silent p.G1437G 0.11 TCGA-NJ-A4YQ-01 8 121357758 121357758 G T COL14A1 Missense_Mutation p.G1678V 0.13 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 8 122626873 122626873 C A HAS2 Nonsense_Mutation p.E379* 0.14 TCGA-NJ-A4YQ-01 8 124033690 124033690 C A DERL1 Missense_Mutation p.G168V 0.14 deleterious(0) probably_damaging(0.968) TCGA-NJ-A4YQ-01 8 125052168 125052168 G T FER1L6 Missense_Mutation p.G837V 0.15 deleterious(0) possibly_damaging(0.884) TCGA-NJ-A4YQ-01 8 133041324 133041324 G - OC90 Frame_Shift_Del p.K379Sfs*23 0.16 TCGA-NJ-A4YQ-01 8 133141762 133141762 G A KCNQ3 Missense_Mutation p.P789L 0.16 deleterious(0.04) probably_damaging(1) TCGA-NJ-A4YQ-01 8 133898711 133898711 C T TG Missense_Mutation p.A365V 0.15 tolerated(0.7) benign(0.001) TCGA-NJ-A4YQ-01 8 133913597 133913597 G T TG Splice_Site p.X1145_splice 0.16 TCGA-NJ-A4YQ-01 8 133913770 133913770 C A TG Silent p.R1202R 0.11 TCGA-NJ-A4YQ-01 8 134108561 134108561 C A TG Missense_Mutation p.L2506M 0.15 deleterious(0) probably_damaging(0.989) TCGA-NJ-A4YQ-01 8 139180268 139180268 G T FAM135B Silent p.S376S 0.15 TCGA-NJ-A4YQ-01 8 139606328 139606328 G T COL22A1 Missense_Mutation p.P1516H 0.07 unknown(0) TCGA-NJ-A4YQ-01 8 141231578 141231578 C A TRAPPC9 Missense_Mutation p.G944C 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-NJ-A4YQ-01 8 143763462 143763462 G T PSCA Missense_Mutation p.S86I 0.22 deleterious(0) probably_damaging(0.942) TCGA-NJ-A4YQ-01 8 144643223 144643223 G - GSDMD Frame_Shift_Del p.G211Afs*55 0.14 TCGA-NJ-A4YQ-01 8 1497730 1497730 T A DLGAP2 Missense_Mutation p.W291R 0.21 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 8 1514007 1514007 A T DLGAP2 Silent p.L383L 0.19 TCGA-NJ-A4YQ-01 8 22212876 22212877 TG - PIWIL2 Frame_Shift_Del p.C928Pfs*33 0.12 TCGA-NJ-A4YQ-01 8 24359036 24359036 G T ADAM7 Missense_Mutation p.D719Y 0.14 deleterious(0) probably_damaging(0.959) TCGA-NJ-A4YQ-01 8 26484796 26484796 C A DPYSL2 Silent p.G202G 0.21 TCGA-NJ-A4YQ-01 8 27516099 27516099 G T SCARA3 Nonsense_Mutation p.G138* 0.19 TCGA-NJ-A4YQ-01 8 32600255 32600255 C A NRG1 Intron 0.11 TCGA-NJ-A4YQ-01 8 32621339 32621339 C - NRG1 Frame_Shift_Del p.P454Lfs*11 0.15 TCGA-NJ-A4YQ-01 8 41563750 41563750 T A ANK1 Missense_Mutation p.T703S 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-NJ-A4YQ-01 8 42177128 42177128 G C IKBKB Missense_Mutation p.W514C 0.17 deleterious(0) possibly_damaging(0.866) TCGA-NJ-A4YQ-01 8 49985367 49985367 G T C8orf22 5'UTR 0.17 TCGA-NJ-A4YQ-01 8 53062449 53062449 G T ST18 Missense_Mutation p.S632Y 0.11 deleterious(0) possibly_damaging(0.853) TCGA-NJ-A4YQ-01 8 6378889 6378889 G C ANGPT2 Missense_Mutation p.I203M 0.07 deleterious(0.02) benign(0.002) TCGA-NJ-A4YQ-01 8 69351697 69351697 T C C8orf34 Intron 0.17 TCGA-NJ-A4YQ-01 8 70488288 70488288 A T SULF1 Missense_Mutation p.M86L 0.23 deleterious(0.03) benign(0.053) TCGA-NJ-A4YQ-01 8 70536416 70536416 G T SULF1 Missense_Mutation p.V612F 0.12 deleterious(0.01) possibly_damaging(0.616) TCGA-NJ-A4YQ-01 8 70978683 70978683 A T PRDM14 Missense_Mutation p.W324R 0.17 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 8 72935251 72935251 G T TRPA1 Missense_Mutation p.H1084N 0.16 tolerated(1) benign(0.004) TCGA-NJ-A4YQ-01 8 77766230 77766230 A T ZFHX4 Missense_Mutation p.Q2358L 0.12 benign(0.254) TCGA-NJ-A4YQ-01 8 88249314 88249314 A G CNBD1 Missense_Mutation p.M249V 0.21 tolerated(0.25) benign(0.001) TCGA-NJ-A4YQ-01 8 88885054 88885054 G T DCAF4L2 Silent p.L382L 0.07 TCGA-NJ-A4YQ-01 8 88886136 88886136 C A DCAF4L2 Nonsense_Mutation p.G22* 0.15 TCGA-NJ-A4YQ-01 8 8998907 8998907 C G PPP1R3B Silent p.P85P 0.18 TCGA-NJ-A4YQ-01 8 97270750 97270750 C A MTERFD1 Nonsense_Mutation p.G57* 0.10 TCGA-NJ-A4YQ-01 8 97797370 97797370 A G CPQ Missense_Mutation p.K82R 0.19 tolerated(0.23) benign(0.001) TCGA-NJ-A4YQ-01 8 99170233 99170233 G T POP1 Missense_Mutation p.V937L 0.14 tolerated(0.49) benign(0.011) TCGA-NJ-A4YQ-01 9 100889046 100889046 C A CORO2A Missense_Mutation p.A411S 0.06 tolerated(0.77) benign(0) TCGA-NJ-A4YQ-01 9 101894847 101894847 G T TGFBR1 Missense_Mutation p.V134L 0.07 tolerated(0.12) benign(0.123) TCGA-NJ-A4YQ-01 9 103275609 103275609 G T TMEFF1 Nonsense_Mutation p.E153* 0.16 TCGA-NJ-A4YQ-01 9 104375662 104375662 G T GRIN3A Missense_Mutation p.T921K 0.09 deleterious(0) probably_damaging(0.998) TCGA-NJ-A4YQ-01 9 105766997 105766997 A T CYLC2 Missense_Mutation p.L67F 0.18 deleterious(0.03) possibly_damaging(0.465) TCGA-NJ-A4YQ-01 9 107457248 107457248 C G OR13D1 Missense_Mutation p.I182M 0.05 tolerated(0.12) benign(0.378) TCGA-NJ-A4YQ-01 9 111617946 111617946 C G ACTL7B Missense_Mutation p.A89P 0.12 deleterious(0.02) possibly_damaging(0.653) TCGA-NJ-A4YQ-01 9 112900127 112900127 G T PALM2-AKAP2 Missense_Mutation p.G768V 0.15 tolerated(0.63) possibly_damaging(0.878) TCGA-NJ-A4YQ-01 9 118950260 118950260 G T PAPPA Missense_Mutation p.D415Y 0.08 deleterious(0) probably_damaging(0.961) TCGA-NJ-A4YQ-01 9 124544879 124544879 G C DAB2IP Intron 0.18 TCGA-NJ-A4YQ-01 9 125316167 125316167 G C OR1N2 Missense_Mutation p.W240S 0.11 tolerated(0.94) benign(0.008) TCGA-NJ-A4YQ-01 9 130097597 130097597 A C GARNL3 Missense_Mutation p.K286N 0.19 tolerated(0.05) benign(0.032) TCGA-NJ-A4YQ-01 9 131004603 131004603 G T DNM1 Silent p.L550L 0.13 TCGA-NJ-A4YQ-01 9 133943616 133943616 G T LAMC3 Silent p.R915R 0.15 TCGA-NJ-A4YQ-01 9 134467558 134467558 T A RAPGEF1 Missense_Mutation p.Y733F 0.24 tolerated(0.17) benign(0.094) TCGA-NJ-A4YQ-01 9 135267595 135267595 T A TTF1 Splice_Site p.X619_splice 0.10 TCGA-NJ-A4YQ-01 9 135985807 135985807 C A RALGDS Nonsense_Mutation p.E122* 0.18 TCGA-NJ-A4YQ-01 9 136217159 136217159 C T RPL7A Silent p.D160D 0.11 TCGA-NJ-A4YQ-01 9 137801709 137801709 A T FCN1 Missense_Mutation p.W306R 0.13 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 9 18474251 18474251 A T ADAMTSL1 Silent p.A7A 0.12 TCGA-NJ-A4YQ-01 9 18680332 18680332 G T ADAMTSL1 Missense_Mutation p.A387S 0.18 tolerated(0.15) probably_damaging(0.919) TCGA-NJ-A4YQ-01 9 21026606 21026606 T G PTPLAD2 Silent p.R87R 0.09 TCGA-NJ-A4YQ-01 9 32633255 32633255 T A TAF1L Nonsense_Mutation p.K775* 0.12 TCGA-NJ-A4YQ-01 9 34556332 34556332 G A CNTFR Missense_Mutation p.S230L 0.19 deleterious(0) probably_damaging(0.913) TCGA-NJ-A4YQ-01 9 34627741 34627741 G A ARID3C Missense_Mutation p.P91S 0.08 tolerated(0.12) possibly_damaging(0.857) TCGA-NJ-A4YQ-01 9 35093138 35093138 T C PIGO Silent p.P336P 0.28 TCGA-NJ-A4YQ-01 9 35389884 35389884 G T UNC13B Silent p.R963R 0.10 TCGA-NJ-A4YQ-01 9 35609662 35609662 G T TESK1 Missense_Mutation p.G602C 0.25 deleterious(0.03) possibly_damaging(0.737) TCGA-NJ-A4YQ-01 9 35792873 35792873 A G NPR2 Silent p.L156L 0.19 TCGA-NJ-A4YQ-01 9 35792898 35792898 C T NPR2 Missense_Mutation p.R165C 0.18 deleterious(0.03) possibly_damaging(0.773) TCGA-NJ-A4YQ-01 9 36169749 36169749 C T CCIN Nonsense_Mutation p.Q84* 0.19 TCGA-NJ-A4YQ-01 9 37732318 37732318 C - FRMPD1 Frame_Shift_Del p.Q293Rfs*6 0.23 TCGA-NJ-A4YQ-01 9 39171395 39171395 G T CNTNAP3 Missense_Mutation p.P435Q 0.14 tolerated(0.21) benign(0.157) TCGA-NJ-A4YQ-01 9 71491657 71491657 T A PIP5K1B Missense_Mutation p.L89I 0.13 tolerated(0.59) benign(0.03) TCGA-NJ-A4YQ-01 9 71532568 71532568 T A PIP5K1B Silent p.P292P 0.07 TCGA-NJ-A4YQ-01 9 79325169 79325169 C A PRUNE2 Missense_Mutation p.S674I 0.13 deleterious(0) probably_damaging(0.945) TCGA-NJ-A4YQ-01 9 8486054 8486054 G T PTPRD Missense_Mutation p.F921L 0.10 tolerated(0.15) probably_damaging(0.977) TCGA-NJ-A4YQ-01 9 90534845 90534845 C A SPATA31C1 RNA 0.05 TCGA-NJ-A4YQ-01 9 90535884 90535884 G T SPATA31C1 RNA 0.12 TCGA-NJ-A4YQ-01 9 95012222 95012222 T C IARS Missense_Mutation p.Y845C 0.17 tolerated(0.07) probably_damaging(0.926) TCGA-NJ-A4YQ-01 9 95179521 95179521 G A OMD Missense_Mutation p.T107I 0.12 deleterious(0.03) possibly_damaging(0.88) TCGA-NJ-A4YQ-01 9 95378176 95378176 C A IPPK Missense_Mutation p.A472S 0.12 tolerated_low_confidence(0.77) benign(0.001) TCGA-NJ-A4YQ-01 9 95378177 95378177 G T IPPK Missense_Mutation p.N471K 0.12 tolerated_low_confidence(0.66) benign(0.015) TCGA-NJ-A4YQ-01 X 102005457 102005457 A C BHLHB9 Missense_Mutation p.N512H 0.18 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 X 105451271 105451271 G A MUM1L1 Missense_Mutation p.V616I 0.18 tolerated(1) benign(0.003) TCGA-NJ-A4YQ-01 X 107423779 107423779 C A COL4A6 Silent p.G700G 0.15 TCGA-NJ-A4YQ-01 X 107865950 107865950 G T COL4A5 Nonsense_Mutation p.G938* 0.29 TCGA-NJ-A4YQ-01 X 108924287 108924287 C A ACSL4 Nonsense_Mutation p.E240* 0.14 TCGA-NJ-A4YQ-01 X 109697062 109697062 C A RGAG1 Missense_Mutation p.L1073I 0.17 tolerated(0.07) possibly_damaging(0.87) TCGA-NJ-A4YQ-01 X 109764342 109764342 C A TDGF1P3 RNA 0.17 TCGA-NJ-A4YQ-01 X 110463671 110463671 G T PAK3 Missense_Mutation p.R580L 0.27 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-NJ-A4YQ-01 X 11207002 11207002 G T ARHGAP6 Missense_Mutation p.A308E 0.21 tolerated(0.75) benign(0.13) TCGA-NJ-A4YQ-01 X 113965955 113965955 C T HTR2C Silent p.A96A 0.18 TCGA-NJ-A4YQ-01 X 122760479 122760479 C A THOC2 Missense_Mutation p.C931F 0.21 tolerated(0.6) benign(0.106) TCGA-NJ-A4YQ-01 X 125299009 125299009 G T DCAF12L2 Missense_Mutation p.S300Y 0.13 deleterious(0.01) benign(0.078) TCGA-NJ-A4YQ-01 X 134303519 134303519 T A CT55 Missense_Mutation p.K93M 0.23 deleterious(0.03) possibly_damaging(0.781) TCGA-NJ-A4YQ-01 X 138644249 138644249 G T F9 3'UTR 0.18 TCGA-NJ-A4YQ-01 X 138886699 138886699 T G ATP11C Silent p.L165L 0.17 TCGA-NJ-A4YQ-01 X 139865906 139865906 G A CDR1 Missense_Mutation p.S209F 0.16 tolerated(0.06) possibly_damaging(0.683) TCGA-NJ-A4YQ-01 X 139866052 139866052 G T CDR1 Silent p.S160S 0.14 TCGA-NJ-A4YQ-01 X 140336571 140336571 G T SPANXC Missense_Mutation p.A7D 0.26 deleterious(0) benign(0.29) TCGA-NJ-A4YQ-01 X 140785680 140785680 G T SPANXD Missense_Mutation p.P79H 0.18 deleterious(0.01) probably_damaging(0.923) TCGA-NJ-A4YQ-01 X 140995492 140995492 G - MAGEC1 Frame_Shift_Del p.E768Rfs*20 0.13 TCGA-NJ-A4YQ-01 X 140996282 140996282 G T MAGEC1 Missense_Mutation p.G1031V 0.16 deleterious(0) unknown(0) TCGA-NJ-A4YQ-01 X 141291650 141291650 C G MAGEC2 Missense_Mutation p.A42P 0.17 tolerated(0.2) benign(0.003) TCGA-NJ-A4YQ-01 X 1428394 1428394 G T CSF2RA 3'UTR 0.14 TCGA-NJ-A4YQ-01 X 148068908 148068908 C - AFF2 Frame_Shift_Del p.P1213Qfs*54 0.17 TCGA-NJ-A4YQ-01 X 149642051 149642051 G A MAMLD1 Intron 0.20 TCGA-NJ-A4YQ-01 X 149895727 149895727 G T MTMR1 Silent p.V123V 0.18 TCGA-NJ-A4YQ-01 X 152815552 152815552 A T ATP2B3 Missense_Mutation p.E544V 0.11 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 X 153070011 153070011 G T PDZD4 Missense_Mutation p.N369K 0.20 tolerated(0.08) benign(0.019) TCGA-NJ-A4YQ-01 X 153496123 153496123 A T OPN1MW2 Missense_Mutation p.Y284F 0.15 deleterious(0) probably_damaging(0.987) TCGA-NJ-A4YQ-01 X 26157349 26157349 G A MAGEB18 Missense_Mutation p.E83K 0.18 tolerated(0.26) benign(0.329) TCGA-NJ-A4YQ-01 X 26157899 26157899 G C MAGEB18 Missense_Mutation p.R266P 0.23 tolerated(0.06) probably_damaging(0.948) TCGA-NJ-A4YQ-01 X 2779569 2779569 C T GYG2 Missense_Mutation p.H313Y 0.32 tolerated(0.14) benign(0.003) TCGA-NJ-A4YQ-01 X 27839625 27839625 C A MAGEB10 Missense_Mutation p.Q68K 0.15 tolerated(0.47) benign(0.039) TCGA-NJ-A4YQ-01 X 30872241 30872241 T C TAB3 Missense_Mutation p.Y514C 0.20 deleterious(0) probably_damaging(0.999) TCGA-NJ-A4YQ-01 X 31986606 31986606 C A DMD Missense_Mutation p.R2155L 0.15 benign(0.433) TCGA-NJ-A4YQ-01 X 34961936 34961936 C A FAM47B Missense_Mutation p.H330N 0.15 tolerated(0.1) benign(0.01) TCGA-NJ-A4YQ-01 X 38260568 38260568 T C OTC Missense_Mutation p.Y143H 0.11 tolerated(0.52) benign(0.016) TCGA-NJ-A4YQ-01 X 48934359 48934359 C A WDR45 Missense_Mutation p.V97L 0.14 deleterious(0.04) benign(0.202) TCGA-NJ-A4YQ-01 X 50339655 50339655 C A SHROOM4 3'UTR 0.15 TCGA-NJ-A4YQ-01 X 50659164 50659164 G A BMP15 Missense_Mutation p.A246T 0.24 tolerated(0.15) benign(0.009) TCGA-NJ-A4YQ-01 X 52896112 52896112 G T XAGE3 Missense_Mutation p.P18Q 0.24 tolerated(0.74) benign(0.005) TCGA-NJ-A4YQ-01 X 5811302 5811302 T A NLGN4X Silent p.R669R 0.16 TCGA-NJ-A4YQ-01 X 5821304 5821304 A G NLGN4X Missense_Mutation p.F472S 0.22 deleterious(0) probably_damaging(1) TCGA-NJ-A4YQ-01 X 64140089 64140089 C A ZC4H2 Silent p.L90L 0.19 TCGA-NJ-A4YQ-01 X 65476013 65476013 G A HEPH Missense_Mutation p.G967R 0.15 tolerated(0.56) benign(0.002) TCGA-NJ-A4YQ-01 X 74519687 74519687 C T UPRT Missense_Mutation p.P227L 0.14 deleterious(0.03) probably_damaging(0.989) TCGA-NJ-A4YQ-01 X 84526150 84526150 G T ZNF711 Missense_Mutation p.Q534H 0.23 tolerated(0.26) possibly_damaging(0.729) TCGA-NJ-A4YQ-01 X 84601001 84601001 G T POF1B Silent p.P196P 0.19 TCGA-NJ-A4YQ-01 X 99956298 99956298 C A SYTL4 Missense_Mutation p.W118C 0.24 deleterious(0) probably_damaging(0.994) TCGA-NJ-A55A-01 10 127697853 127697853 G T FANK1 Intron 0.12 TCGA-NJ-A55A-01 10 74914087 74914087 A T ECD Missense_Mutation p.L237Q 0.17 deleterious(0.01) probably_damaging(0.995) TCGA-NJ-A55A-01 10 88696485 88696485 G T MMRN2 3'UTR 0.04 TCGA-NJ-A55A-01 10 95849086 95849086 A T PLCE1 Intron 0.07 TCGA-NJ-A55A-01 11 117280492 117280492 C A CEP164 Missense_Mutation p.P1303T 0.08 tolerated(0.11) benign(0.011) TCGA-NJ-A55A-01 11 117651328 117651328 G C DSCAML1 Missense_Mutation p.L142V 0.04 deleterious(0) probably_damaging(0.999) TCGA-NJ-A55A-01 11 118370557 118370557 G C KMT2A Missense_Mutation p.M2029I 0.07 possibly_damaging(0.869) TCGA-NJ-A55A-01 11 30557654 30557654 G A MPPED2 Missense_Mutation p.T66I 0.12 tolerated(0.05) possibly_damaging(0.602) TCGA-NJ-A55A-01 11 32460497 32460497 G T WT1 5'Flank 0.16 TCGA-NJ-A55A-01 11 4510220 4510220 C A OR52K1 Silent p.S30S 0.04 TCGA-NJ-A55A-01 11 55419134 55419134 G T OR4S2 Missense_Mutation p.C252F 0.17 deleterious(0) probably_damaging(0.963) TCGA-NJ-A55A-01 11 60102448 60102448 C A MS4A6E Missense_Mutation p.P27H 0.09 tolerated(0.22) benign(0.007) TCGA-NJ-A55A-01 11 66331396 66331396 G C CTSF 3'UTR 0.14 TCGA-NJ-A55A-01 11 88300320 88300320 C A GRM5 Missense_Mutation p.R844L 0.11 deleterious(0) probably_damaging(0.998) TCGA-NJ-A55A-01 11 93542932 93542932 G T MED17 Missense_Mutation p.G545V 0.11 deleterious(0) probably_damaging(0.946) TCGA-NJ-A55A-01 12 105509500 105509500 C T KIAA1033 Silent p.F143F 0.06 TCGA-NJ-A55A-01 12 133248904 133248904 G A POLE Missense_Mutation p.P564L 0.08 deleterious(0.04) possibly_damaging(0.609) TCGA-NJ-A55A-01 12 30882027 30882027 G T CAPRIN2 Missense_Mutation p.T446N 0.06 tolerated(0.48) benign(0.088) TCGA-NJ-A55A-01 12 33003784 33003784 C A PKP2 Nonsense_Mutation p.E432* 0.09 TCGA-NJ-A55A-01 12 33579143 33579143 C A SYT10 Missense_Mutation p.A147S 0.09 tolerated(0.75) probably_damaging(0.994) TCGA-NJ-A55A-01 12 5154969 5154969 C A KCNA5 Silent p.V552V 0.18 TCGA-NJ-A55A-01 12 51586180 51586180 C A POU6F1 Missense_Mutation p.K108N 0.05 tolerated(0.39) benign(0.005) TCGA-NJ-A55A-01 12 51890830 51890830 G C SLC4A8 Silent p.L1001L 0.09 TCGA-NJ-A55A-01 12 53825288 53825288 G T AMHR2 3'UTR 0.08 TCGA-NJ-A55A-01 12 57881756 57881756 G A MARS 5'UTR 0.09 TCGA-NJ-A55A-01 12 5941687 5941687 C A ANO2 Missense_Mutation p.R235L 0.07 deleterious(0.02) benign(0.13) TCGA-NJ-A55A-01 12 92538211 92538211 T C BTG1 Missense_Mutation p.H54R 0.05 tolerated(0.07) benign(0.359) TCGA-NJ-A55A-01 13 20797511 20797511 C T GJB6 Missense_Mutation p.V37M 0.09 tolerated(0.1) possibly_damaging(0.898) TCGA-NJ-A55A-01 13 41706312 41706312 C A KBTBD6 Silent p.V112V 0.09 TCGA-NJ-A55A-01 13 43788051 43788051 C T ENOX1 3'UTR 0.06 TCGA-NJ-A55A-01 13 98116756 98116756 G T RAP2A 3'UTR 0.11 TCGA-NJ-A55A-01 14 66200027 66200027 A G FUT8 Silent p.S446S 0.08 TCGA-NJ-A55A-01 14 94121580 94121580 G T UNC79 Missense_Mutation p.G1957C 0.07 deleterious(0.01) probably_damaging(1) TCGA-NJ-A55A-01 15 22368622 22368622 G T OR4M2 Missense_Mutation p.G16V 0.04 deleterious(0) probably_damaging(0.999) TCGA-NJ-A55A-01 15 25488794 25488794 G C SNORD115-40 RNA 0.04 TCGA-NJ-A55A-01 15 45555407 45555407 C A SLC28A2 Silent p.P137P 0.07 TCGA-NJ-A55A-01 15 82336712 82336712 C A MEX3B Missense_Mutation p.V167L 0.10 deleterious(0.03) probably_damaging(0.996) TCGA-NJ-A55A-01 16 56385383 56385383 A C GNAO1 3'Flank 0.10 TCGA-NJ-A55A-01 16 81095408 81095408 C A C16orf46 Missense_Mutation p.R182S 0.08 tolerated(0.3) benign(0.013) TCGA-NJ-A55A-01 17 29585418 29585418 C - NF1 Frame_Shift_Del p.L1411Sfs*17 0.08 TCGA-NJ-A55A-01 17 35602115 35602115 T C ACACA Missense_Mutation p.M826V 0.05 deleterious(0.02) possibly_damaging(0.739) TCGA-NJ-A55A-01 17 56385969 56385969 C A BZRAP1 Missense_Mutation p.W1555L 0.12 deleterious(0.03) benign(0.012) TCGA-NJ-A55A-01 17 57275130 57275130 G C CTD-2510F5.6 Missense_Mutation p.A39P 0.09 deleterious_low_confidence(0.01) benign(0.006) TCGA-NJ-A55A-01 17 62783425 62783425 T A PLEKHM1P RNA 0.12 TCGA-NJ-A55A-01 17 74077351 74077351 C T ZACN Intron 0.06 TCGA-NJ-A55A-01 17 7605728 7605728 C T WRAP53 Missense_Mutation p.A341V 0.07 deleterious(0.02) probably_damaging(0.914) TCGA-NJ-A55A-01 17 8700984 8700984 G T MFSD6L Silent p.P485P 0.09 TCGA-NJ-A55A-01 18 29038475 29038475 C A DSG3 Missense_Mutation p.P95Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-NJ-A55A-01 18 61234102 61234102 C A SERPINB12 Missense_Mutation p.A359E 0.05 deleterious(0) probably_damaging(0.986) TCGA-NJ-A55A-01 18 63430261 63430261 G T CDH7 Missense_Mutation p.M61I 0.08 tolerated(0.16) benign(0.045) TCGA-NJ-A55A-01 18 72344503 72344503 G T ZNF407 Missense_Mutation p.D510Y 0.07 deleterious(0.05) benign(0.066) TCGA-NJ-A55A-01 19 38858761 38858761 G A CATSPERG Missense_Mutation p.E1002K 0.05 tolerated(0.5) possibly_damaging(0.502) TCGA-NJ-A55A-01 19 38985063 38985063 C A RYR1 Missense_Mutation p.L2116M 0.12 benign(0.137) TCGA-NJ-A55A-01 19 39994813 39994813 T C DLL3 Missense_Mutation p.V252A 0.11 tolerated(0.11) possibly_damaging(0.907) TCGA-NJ-A55A-01 19 43965940 43965940 C A LYPD3 Missense_Mutation p.D202Y 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-NJ-A55A-01 19 45161043 45161043 C T PVR Silent p.L286L 0.11 TCGA-NJ-A55A-01 19 48565388 48565388 A T PLA2G4C Missense_Mutation p.M385K 0.09 deleterious(0) possibly_damaging(0.609) TCGA-NJ-A55A-01 19 52249894 52249894 G A FPR1 Silent p.L118L 0.09 TCGA-NJ-A55A-01 19 55450401 55450401 T A NLRP7 Missense_Mutation p.I596F 0.08 deleterious(0.02) benign(0.003) TCGA-NJ-A55A-01 1 103354457 103354457 C A COL11A1 Missense_Mutation p.G1495C 0.05 unknown(0) TCGA-NJ-A55A-01 1 152282140 152282140 C A FLG Missense_Mutation p.G1741V 0.04 probably_damaging(0.953) TCGA-NJ-A55A-01 1 158390567 158390567 G C OR10K2 Missense_Mutation p.I30M 0.05 tolerated(0.05) benign(0.14) TCGA-NJ-A55A-01 1 158687489 158687489 C A OR6K3 Silent p.R139R 0.06 TCGA-NJ-A55A-01 1 158724953 158724953 G T OR6K6 Missense_Mutation p.E116D 0.10 tolerated(0.11) benign(0.019) TCGA-NJ-A55A-01 1 196300354 196300354 C T KCNT2 Missense_Mutation p.G679R 0.15 deleterious(0) probably_damaging(1) TCGA-NJ-A55A-01 1 228033263 228033263 C A PRSS38 Missense_Mutation p.P226T 0.14 tolerated(0.1) benign(0.438) TCGA-NJ-A55A-01 1 228645165 228645165 G T HIST3H2A Silent p.P118P 0.06 TCGA-NJ-A55A-01 1 237774134 237774134 C A RYR2 Missense_Mutation p.L1586I 0.19 benign(0.287) TCGA-NJ-A55A-01 1 242161821 242161821 G T MAP1LC3C Silent p.I72I 0.24 TCGA-NJ-A55A-01 1 3328245 3328245 C T PRDM16 Missense_Mutation p.P495L 0.05 deleterious(0.01) benign(0.248) TCGA-NJ-A55A-01 1 33487295 33487295 C T AK2 Missense_Mutation p.E77K 0.08 deleterious(0.01) possibly_damaging(0.604) TCGA-NJ-A55A-01 1 4829938 4829938 C A AJAP1 Silent p.T285T 0.05 TCGA-NJ-A55A-01 1 85113117 85113117 T C SSX2IP Nonstop_Mutation p.*615Wext*25 0.08 TCGA-NJ-A55A-01 20 35127677 35127677 G A DLGAP4 Silent p.S681S 0.13 TCGA-NJ-A55A-01 20 57769122 57769122 G C ZNF831 Silent p.G1016G 0.08 TCGA-NJ-A55A-01 20 9561423 9561423 G T PAK7 Missense_Mutation p.A120E 0.04 tolerated(1) benign(0.004) TCGA-NJ-A55A-01 21 11097636 11097636 G C BAGE2 RNA 0.08 TCGA-NJ-A55A-01 21 47851496 47851496 G C PCNT Silent p.V2706V 0.14 TCGA-NJ-A55A-01 22 24086927 24086927 G A ZNF70 Missense_Mutation p.P134L 0.05 deleterious(0.01) benign(0) TCGA-NJ-A55A-01 22 30980679 30980679 G A PES1 Missense_Mutation p.R132W 0.08 deleterious(0) probably_damaging(0.966) TCGA-NJ-A55A-01 22 38061668 38061668 C G PDXP Missense_Mutation p.S227R 0.05 tolerated(0.11) benign(0.001) TCGA-NJ-A55A-01 2 131486877 131486877 G T GPR148 Missense_Mutation p.W51C 0.07 tolerated(0.07) benign(0.053) TCGA-NJ-A55A-01 2 141079552 141079552 C T LRP1B Missense_Mutation p.C4207Y 0.07 benign(0.384) TCGA-NJ-A55A-01 2 179588190 179588190 T G TTN Missense_Mutation p.N7213H 0.14 TCGA-NJ-A55A-01 2 200173569 200173569 T C SATB2 Missense_Mutation p.R552G 0.07 deleterious(0) probably_damaging(0.999) TCGA-NJ-A55A-01 2 20478550 20478550 C A PUM2 Missense_Mutation p.R584M 0.06 deleterious(0) probably_damaging(0.999) TCGA-NJ-A55A-01 2 207426947 207426947 G C ADAM23 Silent p.V425V 0.05 TCGA-NJ-A55A-01 2 207527739 207527739 C G DYTN Silent p.V507V 0.08 TCGA-NJ-A55A-01 2 219506819 219506819 G A ZNF142 Missense_Mutation p.H1474Y 0.06 deleterious(0) benign(0.415) TCGA-NJ-A55A-01 2 220172232 220172232 G T PTPRN Missense_Mutation p.L72I 0.10 tolerated(0.36) benign(0.014) TCGA-NJ-A55A-01 2 230911166 230911166 C T SLC16A14 Missense_Mutation p.V226M 0.12 tolerated(0.23) benign(0.007) TCGA-NJ-A55A-01 2 241402806 241402806 G A GPC1 Missense_Mutation p.V254I 0.05 tolerated(0.21) benign(0.152) TCGA-NJ-A55A-01 2 26151931 26151931 A G KIF3C Silent p.S766S 0.07 TCGA-NJ-A55A-01 2 43783431 43783431 T C THADA Intron 0.12 TCGA-NJ-A55A-01 2 95539840 95539840 A T TEKT4 Missense_Mutation p.T234S 0.07 tolerated(0.1) benign(0.001) TCGA-NJ-A55A-01 3 121207965 121207965 T A POLQ Silent p.S1271S 0.08 TCGA-NJ-A55A-01 3 121353135 121353135 C A HCLS1 Missense_Mutation p.R274S 0.13 tolerated(0.28) benign(0.003) TCGA-NJ-A55A-01 3 14939574 14939574 G T FGD5 Missense_Mutation p.R1013L 0.08 tolerated(0.17) benign(0.323) TCGA-NJ-A55A-01 3 44670829 44670829 C T ZNF197 Silent p.S61S 0.04 TCGA-NJ-A55A-01 4 140641356 140641356 C A MAML3 Silent p.T846T 0.06 TCGA-NJ-A55A-01 4 15437422 15437422 C A C1QTNF7 Silent p.R26R 0.07 TCGA-NJ-A55A-01 4 175896894 175896894 T G ADAM29 Missense_Mutation p.L73W 0.17 deleterious(0) probably_damaging(0.96) TCGA-NJ-A55A-01 4 186185609 186185609 G T SNX25 Missense_Mutation p.R86I 0.07 deleterious(0.04) benign(0.145) TCGA-NJ-A55A-01 4 62758632 62758632 G T LPHN3 Missense_Mutation p.R512L 0.14 tolerated(0.29) possibly_damaging(0.454) TCGA-NJ-A55A-01 4 6599019 6599019 G A MAN2B2 Missense_Mutation p.A413T 0.07 deleterious(0.01) probably_damaging(0.992) TCGA-NJ-A55A-01 4 9784329 9784329 G T DRD5 Missense_Mutation p.A226S 0.06 deleterious(0.01) probably_damaging(1) TCGA-NJ-A55A-01 5 110407554 110407554 T C TSLP 5'UTR 0.09 TCGA-NJ-A55A-01 5 115782740 115782740 G T SEMA6A Missense_Mutation p.L888M 0.06 tolerated(0.12) probably_damaging(0.999) TCGA-NJ-A55A-01 5 140724783 140724783 G A PCDHGA3 Missense_Mutation p.E395K 0.05 deleterious_low_confidence(0.04) possibly_damaging(0.55) TCGA-NJ-A55A-01 5 140764844 140764844 C T PCDHGA7 Missense_Mutation p.T793I 0.07 tolerated_low_confidence(1) benign(0.001) TCGA-NJ-A55A-01 5 146971244 146971244 G T JAKMIP2 Missense_Mutation p.N806K 0.08 tolerated_low_confidence(0.24) benign(0.008) TCGA-NJ-A55A-01 5 147008373 147008373 T - JAKMIP2 Frame_Shift_Del p.R646Efs*8 0.20 TCGA-NJ-A55A-01 5 160033919 160033919 C A ATP10B Missense_Mutation p.A1005S 0.06 tolerated(0.1) benign(0.232) TCGA-NJ-A55A-01 5 36064394 36064394 A T UGT3A2 Missense_Mutation p.H51Q 0.05 deleterious(0.02) probably_damaging(0.994) TCGA-NJ-A55A-01 5 71492536 71492536 C T MAP1B Silent p.G1118G 0.17 TCGA-NJ-A55A-01 6 116757314 116757314 A T DSE Silent p.L561L 0.09 TCGA-NJ-A55A-01 6 165715716 165715716 G A C6orf118 Missense_Mutation p.T32M 0.16 deleterious(0.04) benign(0.05) TCGA-NJ-A55A-01 6 30297117 30297117 A T TRIM39 Missense_Mutation p.E8V 0.05 deleterious_low_confidence(0.04) unknown(0) TCGA-NJ-A55A-01 6 33281116 33281116 G A TAPBP Missense_Mutation p.P116L 0.11 deleterious(0) probably_damaging(0.969) TCGA-NJ-A55A-01 6 33657012 33657012 C T ITPR3 Intron 0.09 TCGA-NJ-A55A-01 6 43181476 43181476 G A CUL9 Silent p.G1838G 0.14 TCGA-NJ-A55A-01 6 51923312 51923312 T A PKHD1 Missense_Mutation p.T441S 0.11 tolerated(1) benign(0.016) TCGA-NJ-A55A-01 7 100349486 100349486 C A ZAN Silent p.V586V 0.18 TCGA-NJ-A55A-01 7 119915726 119915726 A T KCND2 Missense_Mutation p.K347M 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-NJ-A55A-01 7 132169773 132169773 C G PLXNA4 Intron 0.07 TCGA-NJ-A55A-01 7 141672585 141672585 G T TAS2R38 Missense_Mutation p.A302D 0.06 tolerated(0.07) possibly_damaging(0.638) TCGA-NJ-A55A-01 7 143140674 143140674 C A TAS2R60 Silent p.G43G 0.12 TCGA-NJ-A55A-01 7 147815290 147815290 G A CNTNAP2 Missense_Mutation p.D822N 0.07 deleterious(0) probably_damaging(0.993) TCGA-NJ-A55A-01 7 18625073 18625073 G T HDAC9 Silent p.L64L 0.08 TCGA-NJ-A55A-01 7 38530677 38530677 G T AMPH Silent p.T123T 0.11 TCGA-NJ-A55A-01 8 12594296 12594297 - T LONRF1 Frame_Shift_Ins p.N455Kfs*2 0.09 TCGA-NJ-A55A-01 8 13959901 13959901 T A SGCZ Missense_Mutation p.Q243L 0.09 tolerated(0.1) benign(0.009) TCGA-NJ-A55A-01 8 144103160 144103160 G T LY6E Missense_Mutation p.G117V 0.09 tolerated(0.06) probably_damaging(0.972) TCGA-NJ-A55A-01 8 145999360 145999360 T A ZNF34 Missense_Mutation p.H325L 0.24 deleterious(0) probably_damaging(0.996) TCGA-NJ-A55A-01 8 35406958 35406958 C A UNC5D Missense_Mutation p.F84L 0.26 deleterious(0) probably_damaging(0.98) TCGA-NJ-A55A-01 8 68340320 68340320 C A CPA6 Missense_Mutation p.G363V 0.11 deleterious(0.02) probably_damaging(1) TCGA-NJ-A55A-01 9 131191103 131191103 G T CERCAM Silent p.G318G 0.08 TCGA-NJ-A55A-01 9 131512964 131512964 C A ZER1 Missense_Mutation p.Q430H 0.12 tolerated(0.4) benign(0.172) TCGA-NJ-A55A-01 9 133779663 133779663 G T FIBCD1 Missense_Mutation p.R392S 0.05 deleterious(0.02) possibly_damaging(0.803) TCGA-NJ-A55A-01 9 135204865 135204865 A C SETX Missense_Mutation p.I707R 0.08 tolerated_low_confidence(0.18) benign(0.071) TCGA-NJ-A55A-01 9 34971461 34971461 C A KIAA1045 Missense_Mutation p.Q56K 0.07 tolerated(0.38) benign(0.006) TCGA-NJ-A55A-01 9 91994042 91994042 C A SEMA4D Silent p.S722S 0.12 TCGA-NJ-A55A-01 X 117582971 117582971 A G WDR44 3'UTR 0.19 TCGA-NJ-A55A-01 X 119672061 119672061 C T CUL4B Missense_Mutation p.C637Y 0.12 deleterious(0) probably_damaging(0.994) TCGA-NJ-A55A-01 X 134989562 134989562 T C SAGE1 Missense_Mutation p.I323T 0.12 deleterious(0.03) benign(0.001) TCGA-NJ-A55A-01 X 16672563 16672563 G A S100G Silent p.L57L 0.04 TCGA-NJ-A55A-01 X 18342108 18342108 C T SCML2 Missense_Mutation p.G90R 0.08 deleterious(0) probably_damaging(1) TCGA-NJ-A55A-01 X 34961215 34961215 C G FAM47B Missense_Mutation p.D89E 0.06 tolerated(0.39) probably_damaging(0.997) TCGA-NJ-A55A-01 X 70757866 70757866 G A OGT Missense_Mutation p.A136T 0.07 tolerated(0.49) benign(0.007) TCGA-NJ-A55A-01 X 77296212 77296212 C G ATP7A Missense_Mutation p.A1261G 0.06 deleterious(0) benign(0.018) TCGA-NJ-A55O-01 10 25885645 25885645 G A GPR158 Missense_Mutation p.R691Q 0.14 deleterious(0) probably_damaging(0.971) TCGA-NJ-A55O-01 10 37482000 37482000 G T ANKRD30A Missense_Mutation p.D785Y 0.12 deleterious(0.02) benign(0.043) TCGA-NJ-A55O-01 10 96271394 96271394 A T TBC1D12 Missense_Mutation p.R582W 0.12 deleterious(0) probably_damaging(0.998) TCGA-NJ-A55O-01 11 117979592 117979592 G T TMPRSS4 Silent p.L188L 0.12 TCGA-NJ-A55O-01 11 124765390 124765390 A T ROBO4 Silent p.P333P 0.08 TCGA-NJ-A55O-01 11 125864182 125864182 C A CDON Nonsense_Mutation p.E883* 0.13 TCGA-NJ-A55O-01 11 15197518 15197518 C A INSC Silent p.A143A 0.13 TCGA-NJ-A55O-01 11 20673935 20673935 G T SLC6A5 Missense_Mutation p.C724F 0.12 tolerated(0.6) benign(0.002) TCGA-NJ-A55O-01 11 55418856 55418856 T A OR4S2 Silent p.A159A 0.15 TCGA-NJ-A55O-01 11 55798280 55798280 C G OR5AS1 Missense_Mutation p.P129R 0.06 deleterious(0) probably_damaging(0.999) TCGA-NJ-A55O-01 11 55873323 55873323 G T OR8H2 Nonsense_Mutation p.G269* 0.11 TCGA-NJ-A55O-01 11 6472274 6472274 C T TRIM3 Missense_Mutation p.G573D 0.13 deleterious(0) probably_damaging(1) TCGA-NJ-A55O-01 11 72410115 72410115 G A ARAP1 Missense_Mutation p.R826W 0.06 deleterious(0) probably_damaging(1) TCGA-NJ-A55O-01 11 74914361 74914361 C A SLCO2B1 Missense_Mutation p.P613H 0.19 deleterious(0) probably_damaging(0.992) TCGA-NJ-A55O-01 11 82879581 82879581 G C PCF11 Missense_Mutation p.G735A 0.13 tolerated(0.41) benign(0.167) TCGA-NJ-A55O-01 11 92498130 92498130 C A FAT3 Missense_Mutation p.P1357H 0.06 possibly_damaging(0.894) TCGA-NJ-A55O-01 12 101436172 101436172 G T ANO4 Missense_Mutation p.M325I 0.11 deleterious(0.01) probably_damaging(0.942) TCGA-NJ-A55O-01 12 10373180 10373180 A T GABARAPL1 Intron 0.27 TCGA-NJ-A55O-01 12 112688129 112688129 T A HECTD4 Missense_Mutation p.S1111C 0.12 probably_damaging(0.982) TCGA-NJ-A55O-01 12 11546831 11546832 - A PRB2 Frame_Shift_Ins p.P61Sfs*364 0.09 TCGA-NJ-A55O-01 12 124297757 124297757 A T DNAH10 Missense_Mutation p.Q946L 0.13 benign(0.034) TCGA-NJ-A55O-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.24 deleterious(0.04) probably_damaging(0.993) TCGA-NJ-A55O-01 12 58174040 58174040 G T METTL21B Missense_Mutation p.G98W 0.15 deleterious(0) probably_damaging(1) TCGA-NJ-A55O-01 13 48575453 48575453 C G SUCLA2 5'UTR 0.30 TCGA-NJ-A55O-01 13 95847155 95847155 G A ABCC4 Missense_Mutation p.R400C 0.21 tolerated(0.05) benign(0) TCGA-NJ-A55O-01 14 24774918 24774918 A T CIDEB Missense_Mutation p.L194Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-NJ-A55O-01 14 78374163 78374163 G T ADCK1 Missense_Mutation p.W253C 0.12 deleterious(0) probably_damaging(0.99) TCGA-NJ-A55O-01 14 81296585 81296585 C A CEP128 Intron 0.33 TCGA-NJ-A55O-01 15 25339257 25339257 C A SNORD116-24 RNA 0.12 TCGA-NJ-A55O-01 15 33872315 33872315 C A RYR3 Silent p.L469L 0.32 TCGA-NJ-A55O-01 15 35192938 35192938 C A AQR Missense_Mutation p.A710S 0.06 tolerated(0.7) benign(0.002) TCGA-NJ-A55O-01 15 41814988 41814988 T A RPAP1 Missense_Mutation p.Q906L 0.14 tolerated(0.17) benign(0.013) TCGA-NJ-A55O-01 15 43282228 43282228 G A UBR1 Missense_Mutation p.S1283L 0.14 tolerated(0.33) benign(0.002) TCGA-NJ-A55O-01 15 62270944 62270944 T C VPS13C Missense_Mutation p.N724S 0.12 tolerated(0.57) benign(0.037) TCGA-NJ-A55O-01 15 84705711 84705711 G T ADAMTSL3 Missense_Mutation p.W1647C 0.20 deleterious(0) possibly_damaging(0.682) TCGA-NJ-A55O-01 15 85341199 85341199 C T ZNF592 Silent p.P833P 0.15 TCGA-NJ-A55O-01 15 90126152 90126152 C - TICRR Frame_Shift_Del p.S298Rfs*27 0.15 TCGA-NJ-A55O-01 16 76528937 76528937 C A CNTNAP4 Nonsense_Mutation p.C664* 0.06 TCGA-NJ-A55O-01 16 77401495 77401495 T A ADAMTS18 Silent p.A207A 0.12 TCGA-NJ-A55O-01 17 19216559 19216559 C T EPN2 Missense_Mutation p.P372S 0.09 tolerated(0.14) benign(0.005) TCGA-NJ-A55O-01 17 27209210 27209210 C T FLOT2 Missense_Mutation p.D209N 0.07 deleterious(0.02) benign(0.12) TCGA-NJ-A55O-01 17 28788988 28788988 A G CPD Missense_Mutation p.T1242A 0.12 tolerated(0.24) possibly_damaging(0.824) TCGA-NJ-A55O-01 17 32688895 32688895 A T CCL1 Missense_Mutation p.C33S 0.09 deleterious(0) probably_damaging(0.999) TCGA-NJ-A55O-01 17 39680656 39680656 T C KRT19 Missense_Mutation p.D266G 0.09 deleterious(0) probably_damaging(0.992) TCGA-NJ-A55O-01 17 9757867 9757867 C A GLP2R Missense_Mutation p.S187Y 0.07 tolerated(0.1) possibly_damaging(0.819) TCGA-NJ-A55O-01 18 28611064 28611064 C T DSC3 Missense_Mutation p.G77R 0.08 deleterious(0) probably_damaging(1) TCGA-NJ-A55O-01 18 61234132 61234132 A T SERPINB12 Missense_Mutation p.E369V 0.13 tolerated(0.65) benign(0.001) TCGA-NJ-A55O-01 18 63547940 63547940 G T CDH7 Missense_Mutation p.G723V 0.12 tolerated(0.09) benign(0.034) TCGA-NJ-A55O-01 19 1207118 1207118 C A STK11 Nonsense_Mutation p.S69* 0.11 TCGA-NJ-A55O-01 19 12779979 12779979 A T WDR83OS Missense_Mutation p.L40Q 0.06 deleterious(0) probably_damaging(0.996) TCGA-NJ-A55O-01 19 36967453 36967453 G A ZNF566 Nonsense_Mutation p.Q3* 0.14 TCGA-NJ-A55O-01 19 36967454 36967454 A G ZNF566 Silent p.A2A 0.13 TCGA-NJ-A55O-01 19 38911777 38911777 C A RASGRP4 Missense_Mutation p.W91L 0.12 tolerated(0.06) benign(0.029) TCGA-NJ-A55O-01 19 40520078 40520078 T C ZNF546 Missense_Mutation p.Y301H 0.08 tolerated(0.05) possibly_damaging(0.604) TCGA-NJ-A55O-01 19 51890567 51890567 C G LIM2 Missense_Mutation p.R44P 0.14 deleterious(0) probably_damaging(1) TCGA-NJ-A55O-01 19 52569093 52569093 T C ZNF841 Missense_Mutation p.Y681C 0.11 deleterious(0.01) possibly_damaging(0.54) TCGA-NJ-A55O-01 19 54265622 54265622 G A MIR519A2 RNA 0.12 TCGA-NJ-A55O-01 19 55501531 55501531 A T NLRP2 Missense_Mutation p.R836S 0.15 tolerated(0.05) possibly_damaging(0.56) TCGA-NJ-A55O-01 19 58214095 58214095 G T ZNF154 Silent p.A74A 0.12 TCGA-NJ-A55O-01 19 9045880 9045880 G T MUC16 Silent p.S11917S 0.07 TCGA-NJ-A55O-01 19 9058318 9058318 G T MUC16 Missense_Mutation p.P9710T 0.20 unknown(0) TCGA-NJ-A55O-01 19 9077796 9077796 C A MUC16 Missense_Mutation p.S3217I 0.13 unknown(0) TCGA-NJ-A55O-01 1 101190237 101190237 G T VCAM1 Missense_Mutation p.G240V 0.09 deleterious(0.02) possibly_damaging(0.71) TCGA-NJ-A55O-01 1 107867473 107867473 G A NTNG1 Silent p.G272G 0.15 TCGA-NJ-A55O-01 1 156816444 156816444 C A INSRR Silent p.G559G 0.10 TCGA-NJ-A55O-01 1 158623173 158623173 G C SPTA1 Missense_Mutation p.P1027A 0.13 deleterious(0.02) probably_damaging(0.938) TCGA-NJ-A55O-01 1 158639307 158639307 C A SPTA1 Missense_Mutation p.R575L 0.08 deleterious(0) probably_damaging(0.921) TCGA-NJ-A55O-01 1 158687040 158687040 T A OR6K3 Missense_Mutation p.Y289F 0.12 deleterious(0) probably_damaging(0.973) TCGA-NJ-A55O-01 1 158687044 158687044 T A OR6K3 Missense_Mutation p.I288F 0.14 deleterious(0) probably_damaging(0.963) TCGA-NJ-A55O-01 1 158687666 158687666 C G OR6K3 Missense_Mutation p.K80N 0.10 tolerated(0.24) benign(0.062) TCGA-NJ-A55O-01 1 160320040 160320040 G T NCSTN Missense_Mutation p.Q194H 0.10 deleterious(0) possibly_damaging(0.62) TCGA-NJ-A55O-01 1 161559416 161559416 T A RP11-25K21.6 Intron 0.07 TCGA-NJ-A55O-01 1 190068102 190068102 G T BRINP3 Nonsense_Mutation p.C449* 0.10 TCGA-NJ-A55O-01 1 19168283 19168283 G T TAS1R2 Missense_Mutation p.H511N 0.10 deleterious(0.02) benign(0.186) TCGA-NJ-A55O-01 1 201186487 201186487 C A IGFN1 Missense_Mutation p.A3223E 0.06 probably_damaging(0.994) TCGA-NJ-A55O-01 1 201759701 201759701 C A NAV1 Missense_Mutation p.S1080Y 0.06 deleterious(0) possibly_damaging(0.878) TCGA-NJ-A55O-01 1 203472699 203472699 C A OPTC Missense_Mutation p.Q284K 0.06 tolerated(0.1) benign(0.065) TCGA-NJ-A55O-01 1 204172024 204172024 G A GOLT1A Silent p.N39N 0.09 TCGA-NJ-A55O-01 1 207106505 207106505 C A PIGR Missense_Mutation p.R571L 0.10 tolerated(0.28) benign(0.109) TCGA-NJ-A55O-01 1 209969711 209969711 C A IRF6 Missense_Mutation p.G121C 0.11 deleterious(0.01) possibly_damaging(0.711) TCGA-NJ-A55O-01 1 212617691 212617691 A T NENF Silent p.G83G 0.12 TCGA-NJ-A55O-01 1 21268711 21268711 T A EIF4G3 Silent p.I262I 0.09 TCGA-NJ-A55O-01 1 232650439 232650439 C A SIPA1L2 Missense_Mutation p.R216L 0.13 deleterious(0) probably_damaging(0.99) TCGA-NJ-A55O-01 1 237729883 237729883 G A RYR2 Silent p.V1077V 0.13 TCGA-NJ-A55O-01 1 247902447 247902447 C T OR14K1 Silent p.C177C 0.10 TCGA-NJ-A55O-01 1 248202038 248202038 G T OR2L2 Missense_Mutation p.A157S 0.13 tolerated(0.07) benign(0.236) TCGA-NJ-A55O-01 1 248685229 248685229 C A OR2G6 Nonsense_Mutation p.Y94* 0.07 TCGA-NJ-A55O-01 1 40661420 40661420 A C RLF Silent p.P197P 0.16 TCGA-NJ-A55O-01 1 90048428 90048428 G A LRRC8B Silent p.L73L 0.07 TCGA-NJ-A55O-01 1 91784760 91784760 G A HFM1 Missense_Mutation p.S896L 0.10 deleterious(0.02) possibly_damaging(0.542) TCGA-NJ-A55O-01 20 271358 271358 A T C20orf96 5'UTR 0.19 TCGA-NJ-A55O-01 20 30753155 30753155 G A TM9SF4 Missense_Mutation p.V613I 0.12 tolerated(0.27) benign(0.071) TCGA-NJ-A55O-01 20 44645046 44645046 A T MMP9 3'UTR 0.11 TCGA-NJ-A55O-01 20 47990864 47990864 G C KCNB1 Missense_Mutation p.I411M 0.11 deleterious(0) probably_damaging(1) TCGA-NJ-A55O-01 20 9364878 9364878 A T PLCB4 Missense_Mutation p.Y295F 0.19 tolerated(0.21) benign(0.125) TCGA-NJ-A55O-01 21 32492919 32492919 C A TIAM1 Missense_Mutation p.V1515L 0.13 tolerated(0.67) benign(0.002) TCGA-NJ-A55O-01 22 30661059 30661059 C A OSM Missense_Mutation p.V37L 0.09 tolerated(0.24) benign(0.003) TCGA-NJ-A55O-01 22 36697096 36697096 G T MYH9 Missense_Mutation p.A880E 0.15 benign(0.001) TCGA-NJ-A55O-01 22 37407157 37407157 C T TST Missense_Mutation p.V269M 0.09 deleterious(0.01) probably_damaging(0.995) TCGA-NJ-A55O-01 22 38119239 38119239 C T TRIOBP Missense_Mutation p.R226W 0.12 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-NJ-A55O-01 2 107459708 107459708 C A ST6GAL2 Silent p.R242R 0.19 TCGA-NJ-A55O-01 2 127453712 127453712 T C GYPC Silent p.F127F 0.23 TCGA-NJ-A55O-01 2 131688546 131688546 C A ARHGEF4 Missense_Mutation p.P6T 0.10 tolerated_low_confidence(0.12) benign(0.034) TCGA-NJ-A55O-01 2 160035560 160035560 C T TANC1 Missense_Mutation p.S799F 0.12 deleterious(0) probably_damaging(0.999) TCGA-NJ-A55O-01 2 198266512 198266512 C A SF3B1 Missense_Mutation p.R775L 0.10 deleterious(0) probably_damaging(0.921) TCGA-NJ-A55O-01 2 21229787 21229787 G T APOB Missense_Mutation p.P3318Q 0.16 possibly_damaging(0.871) TCGA-NJ-A55O-01 2 238289948 238289949 - A COL6A3 Frame_Shift_Ins p.P503Sfs*32 0.12 TCGA-NJ-A55O-01 2 31135133 31135133 C T GALNT14 Missense_Mutation p.A491T 0.10 tolerated(0.16) benign(0.107) TCGA-NJ-A55O-01 3 128181655 128181655 A T DNAJB8 Missense_Mutation p.M145K 0.12 tolerated(0.87) benign(0.031) TCGA-NJ-A55O-01 3 142242938 142242938 G T ATR Missense_Mutation p.A1350D 0.09 deleterious(0.01) probably_damaging(0.974) TCGA-NJ-A55O-01 3 155215151 155215151 C A PLCH1 Missense_Mutation p.V606L 0.10 deleterious(0.02) possibly_damaging(0.633) TCGA-NJ-A55O-01 3 180397268 180397268 G T CCDC39 5'UTR 0.11 TCGA-NJ-A55O-01 3 25775411 25775411 C A NGLY1 Missense_Mutation p.K404N 0.10 tolerated(0.08) benign(0.049) TCGA-NJ-A55O-01 3 45776857 45776857 C T SACM1L Nonsense_Mutation p.Q411* 0.06 TCGA-NJ-A55O-01 4 126389937 126389937 G C FAT4 Missense_Mutation p.G4057A 0.14 benign(0.012) TCGA-NJ-A55O-01 4 154624528 154624528 G T TLR2 Nonsense_Mutation p.G157* 0.07 TCGA-NJ-A55O-01 4 174169303 174169303 G T GALNT7 Missense_Mutation p.G100V 0.14 tolerated(0.63) benign(0.002) TCGA-NJ-A55O-01 4 189068468 189068468 C A TRIML1 Missense_Mutation p.P450Q 0.07 deleterious(0.01) probably_damaging(1) TCGA-NJ-A55O-01 4 6863370 6863370 G T KIAA0232 Nonsense_Mutation p.E421* 0.11 TCGA-NJ-A55O-01 4 8398716 8398716 T A ACOX3 Missense_Mutation p.Q335L 0.11 deleterious(0.02) possibly_damaging(0.729) TCGA-NJ-A55O-01 4 89602477 89602477 G T HERC3 Splice_Site p.X836_splice 0.20 TCGA-NJ-A55O-01 5 121187742 121187742 C A FTMT Silent p.L28L 0.12 TCGA-NJ-A55O-01 5 137028039 137028039 C A KLHL3 Missense_Mutation p.G154V 0.12 deleterious(0) probably_damaging(0.994) TCGA-NJ-A55O-01 5 140515722 140515722 A - PCDHB5 Frame_Shift_Del p.N236Mfs*25 0.15 TCGA-NJ-A55O-01 5 140559037 140559037 C A PCDHB8 Silent p.V474V 0.08 TCGA-NJ-A55O-01 5 150947476 150947476 G A FAT2 Silent p.S339S 0.17 TCGA-NJ-A55O-01 5 31322957 31322957 C A CDH6 Missense_Mutation p.Q639K 0.16 tolerated(0.14) probably_damaging(0.973) TCGA-NJ-A55O-01 5 35070364 35070364 G T PRLR Missense_Mutation p.H183N 0.10 tolerated(0.18) possibly_damaging(0.787) TCGA-NJ-A55O-01 5 35876376 35876376 T A IL7R Missense_Mutation p.C390S 0.10 tolerated(0.17) benign(0.117) TCGA-NJ-A55O-01 5 82837386 82837386 G T VCAN Missense_Mutation p.G2855V 0.13 tolerated(0.23) benign(0.011) TCGA-NJ-A55O-01 5 86708440 86708440 C G CCNH Intron 0.20 TCGA-NJ-A55O-01 6 100841683 100841683 G T SIM1 Missense_Mutation p.P417Q 0.11 deleterious(0.03) probably_damaging(1) TCGA-NJ-A55O-01 6 108224067 108224067 C A SEC63 Missense_Mutation p.R397L 0.06 tolerated(0.23) benign(0.013) TCGA-NJ-A55O-01 6 55939056 55939056 C A COL21A1 Missense_Mutation p.G647C 0.15 deleterious(0) probably_damaging(1) TCGA-NJ-A55O-01 6 97051559 97051559 G T FHL5 Missense_Mutation p.D24Y 0.08 deleterious(0) possibly_damaging(0.798) TCGA-NJ-A55O-01 7 100013643 100013643 G A ZCWPW1 Missense_Mutation p.H236Y 0.08 tolerated(0.49) benign(0.004) TCGA-NJ-A55O-01 7 101265410 101265410 C A MYL10 Silent p.T140T 0.10 TCGA-NJ-A55O-01 7 101559447 101559447 A T CUX1 Missense_Mutation p.E39V 0.08 deleterious(0) unknown(0) TCGA-NJ-A55O-01 7 119915013 119915013 C A KCND2 Missense_Mutation p.H109Q 0.12 tolerated(0.77) benign(0) TCGA-NJ-A55O-01 7 133041305 133041305 G T EXOC4 Missense_Mutation p.V329F 0.07 tolerated(0.11) benign(0.035) TCGA-NJ-A55O-01 7 142572678 142572678 C A TRPV6 Missense_Mutation p.G422V 0.08 deleterious(0) probably_damaging(0.999) TCGA-NJ-A55O-01 7 146997278 146997278 C A CNTNAP2 Missense_Mutation p.A465D 0.13 deleterious(0.01) possibly_damaging(0.792) TCGA-NJ-A55O-01 7 150500761 150500761 C T TMEM176A Silent p.A132A 0.14 TCGA-NJ-A55O-01 9 107289059 107289059 C A OR13C4 Silent p.L144L 0.07 TCGA-NJ-A55O-01 9 107331895 107331895 G T OR13C8 Missense_Mutation p.W149C 0.10 deleterious(0) probably_damaging(1) TCGA-NJ-A55O-01 9 115935780 115935780 C T FKBP15 Missense_Mutation p.A829T 0.08 tolerated(0.08) benign(0.04) TCGA-NJ-A55O-01 9 125920674 125920674 G C STRBP Missense_Mutation p.D290E 0.09 tolerated(1) benign(0.004) TCGA-NJ-A55O-01 9 79520968 79520968 T A PRUNE2 5'UTR 0.15 TCGA-NJ-A55O-01 9 87425589 87425589 C A NTRK2 Intron 0.11 TCGA-NJ-A55O-01 X 100603638 100603638 G A TIMM8A Silent p.S5S 0.05 TCGA-NJ-A55O-01 X 100612562 100612562 G A BTK Missense_Mutation p.S371F 0.17 deleterious(0.01) possibly_damaging(0.876) TCGA-NJ-A55O-01 X 11778536 11778536 C A MSL3 Missense_Mutation p.A67E 0.06 deleterious(0.01) probably_damaging(0.981) TCGA-NJ-A55O-01 X 11778537 11778537 A G MSL3 Silent p.A67A 0.06 TCGA-NJ-A55O-01 X 122551379 122551379 G T GRIA3 Missense_Mutation p.G543C 0.06 deleterious(0.02) probably_damaging(0.99) TCGA-NJ-A55O-01 X 122551380 122551380 G T GRIA3 Missense_Mutation p.G543V 0.06 deleterious(0) probably_damaging(0.98) TCGA-NJ-A55O-01 X 128599832 128599832 G A SMARCA1 Silent p.L936L 0.06 TCGA-NJ-A55O-01 X 132159646 132159646 G C USP26 Missense_Mutation p.A868G 0.05 tolerated(0.07) possibly_damaging(0.719) TCGA-NJ-A55O-01 X 144906478 144906478 G C SLITRK2 Silent p.L845L 0.07 TCGA-NJ-A55O-01 X 150349475 150349475 C A GPR50 Missense_Mutation p.P474T 0.07 deleterious_low_confidence(0.01) benign(0.05) TCGA-NJ-A55O-01 X 151092209 151092209 C A MAGEA4 Missense_Mutation p.L25M 0.06 deleterious(0.03) probably_damaging(0.997) TCGA-NJ-A55O-01 X 21608721 21608721 C A CNKSR2 Nonsense_Mutation p.S547* 0.10 TCGA-NJ-A55O-01 X 29973778 29973778 C A IL1RAPL1 Silent p.G644G 0.12 TCGA-NJ-A55O-01 X 34961164 34961164 C A FAM47B Silent p.R72R 0.05 TCGA-NJ-A55O-01 X 54584913 54584913 G C GNL3L Missense_Mutation p.Q497H 0.13 deleterious(0.02) probably_damaging(0.997) TCGA-NJ-A55O-01 X 69502667 69502667 G C RAB41 Missense_Mutation p.D66H 0.05 deleterious(0) probably_damaging(0.999) TCGA-NJ-A55O-01 X 75650066 75650066 G C MAGEE1 Missense_Mutation p.M581I 0.14 tolerated(0.06) possibly_damaging(0.877) TCGA-NJ-A55O-01 X 77264618 77264618 C A ATP7A Missense_Mutation p.A576D 0.06 deleterious(0) probably_damaging(1) TCGA-NJ-A55O-01 X 79932147 79932147 T C BRWD3 Silent p.E1790E 0.13 TCGA-NJ-A55O-01 X 91132560 91132560 G T PCDH11X Missense_Mutation p.A441S 0.08 tolerated(1) benign(0.104) TCGA-NJ-A55R-01 10 106959756 106959756 G A SORCS3 Splice_Site p.X670_splice 0.37 TCGA-NJ-A55R-01 10 116032616 116032616 G - VWA2 Frame_Shift_Del p.D165Mfs*9 0.25 TCGA-NJ-A55R-01 10 13852880 13852880 T G FRMD4A Missense_Mutation p.D47A 0.23 deleterious(0) probably_damaging(0.998) TCGA-NJ-A55R-01 10 15290695 15290695 G T FAM171A1 Missense_Mutation p.Q233K 0.36 deleterious(0.05) benign(0.034) TCGA-NJ-A55R-01 10 17887137 17887137 C A MRC1L1 Intron 0.26 TCGA-NJ-A55R-01 10 54527930 54527930 G T MBL2 Silent p.T238T 0.05 TCGA-NJ-A55R-01 10 76803619 76803619 G T DUPD1 Missense_Mutation p.F119L 0.05 deleterious(0) probably_damaging(1) TCGA-NJ-A55R-01 10 95279445 95279445 G A CEP55 Missense_Mutation p.A358T 0.27 tolerated(0.09) benign(0.186) TCGA-NJ-A55R-01 10 99655677 99655677 T C CRTAC1 Missense_Mutation p.M428V 0.12 tolerated(0.59) benign(0.031) TCGA-NJ-A55R-01 11 15197534 15197534 C A INSC Silent p.R149R 0.14 TCGA-NJ-A55R-01 11 18291457 18291457 G A SAA1 3'UTR 0.26 TCGA-NJ-A55R-01 11 193860 193860 C T SCGB1C1 Silent p.S68S 0.09 TCGA-NJ-A55R-01 11 1977695 1977695 G T MRPL23 3'UTR 0.30 TCGA-NJ-A55R-01 11 20075694 20075694 G T NAV2 Missense_Mutation p.G1540V 0.24 tolerated(0.07) probably_damaging(1) TCGA-NJ-A55R-01 11 209578 209578 G C RIC8A Missense_Mutation p.E102Q 0.10 tolerated(0.19) benign(0.046) TCGA-NJ-A55R-01 11 30601896 30601896 C A MPPED2 Missense_Mutation p.G9C 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-NJ-A55R-01 11 30937203 30937203 T A DCDC1 Nonsense_Mutation p.R1170* 0.11 TCGA-NJ-A55R-01 11 33054483 33054483 C G DEPDC7 Missense_Mutation p.Q438E 0.10 tolerated(0.07) benign(0.038) TCGA-NJ-A55R-01 11 36595901 36595901 C A RAG1 Missense_Mutation p.S349R 0.11 deleterious_low_confidence(0.02) benign(0.282) TCGA-NJ-A55R-01 11 3660972 3660972 G T ART5 Silent p.V229V 0.19 TCGA-NJ-A55R-01 11 48177607 48177607 G T PTPRJ Missense_Mutation p.R1125L 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-NJ-A55R-01 11 4944834 4944834 G T OR51G1 Missense_Mutation p.H246N 0.19 deleterious(0) probably_damaging(1) TCGA-NJ-A55R-01 11 533462 533462 C G HRAS Missense_Mutation p.K147N 0.21 deleterious(0) probably_damaging(0.991) TCGA-NJ-A55R-01 11 5475624 5475624 C A OR51I2 Silent p.A302A 0.12 TCGA-NJ-A55R-01 11 55861397 55861397 C A OR8I2 Missense_Mutation p.T205N 0.12 tolerated(0.89) possibly_damaging(0.756) TCGA-NJ-A55R-01 11 58978579 58978579 G T MPEG1 Missense_Mutation p.S587Y 0.11 deleterious(0.01) possibly_damaging(0.494) TCGA-NJ-A55R-01 11 59271549 59271549 T A OR4D11 Silent p.P167P 0.14 TCGA-NJ-A55R-01 11 59271597 59271597 G T OR4D11 Missense_Mutation p.Q183H 0.31 deleterious(0.04) benign(0.062) TCGA-NJ-A55R-01 11 64427875 64427875 G A NRXN2 Missense_Mutation p.T773I 0.29 deleterious(0.02) benign(0.001) TCGA-NJ-A55R-01 11 68673583 68673583 G T IGHMBP2 Missense_Mutation p.V45L 0.23 tolerated(0.15) benign(0.224) TCGA-NJ-A55R-01 11 70201823 70201823 A G PPFIA1 Silent p.P798P 0.44 TCGA-NJ-A55R-01 11 7111281 7111281 G T RBMXL2 Missense_Mutation p.E310D 0.25 tolerated(1) benign(0.008) TCGA-NJ-A55R-01 11 73849914 73849914 G A C2CD3 Missense_Mutation p.S269F 0.06 tolerated(0.09) benign(0.019) TCGA-NJ-A55R-01 11 88924525 88924525 C A TYR Silent p.T325T 0.24 TCGA-NJ-A55R-01 12 10777427 10777427 C A STYK1 Missense_Mutation p.G250V 0.14 deleterious(0) probably_damaging(1) TCGA-NJ-A55R-01 12 108642027 108642027 G T WSCD2 Missense_Mutation p.M535I 0.22 deleterious(0) probably_damaging(0.991) TCGA-NJ-A55R-01 12 108985414 108985414 C A TMEM119 Missense_Mutation p.G249V 0.22 tolerated_low_confidence(0.06) benign(0.22) TCGA-NJ-A55R-01 12 109278920 109278920 C A DAO Missense_Mutation p.D46E 0.15 deleterious(0) possibly_damaging(0.888) TCGA-NJ-A55R-01 12 121881901 121881901 C G KDM2B Missense_Mutation p.G789R 0.24 deleterious(0.01) benign(0.226) TCGA-NJ-A55R-01 12 123200290 123200290 G T HCAR3 Missense_Mutation p.T332K 0.32 deleterious(0.01) possibly_damaging(0.783) TCGA-NJ-A55R-01 12 124798961 124798961 A C FAM101A Missense_Mutation p.T100P 0.20 deleterious(0.03) possibly_damaging(0.548) TCGA-NJ-A55R-01 12 13716375 13716375 G T GRIN2B Missense_Mutation p.P1266Q 0.20 tolerated(0.35) benign(0.042) TCGA-NJ-A55R-01 12 14975885 14975885 G C C12orf60 Missense_Mutation p.E6Q 0.05 deleterious(0.03) benign(0.324) TCGA-NJ-A55R-01 12 21069101 21069101 G T SLCO1B3 Missense_Mutation p.G677C 0.14 deleterious(0.01) possibly_damaging(0.571) TCGA-NJ-A55R-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.21 deleterious(0.02) possibly_damaging(0.773) TCGA-NJ-A55R-01 12 41587902 41587902 C T PDZRN4 Missense_Mutation p.S252L 0.28 deleterious_low_confidence(0.02) benign(0.092) TCGA-NJ-A55R-01 12 49061263 49061263 A T KANSL2 Intron 0.09 TCGA-NJ-A55R-01 12 49446173 49446173 C A KMT2D Missense_Mutation p.E431D 0.22 unknown(0) TCGA-NJ-A55R-01 12 49495284 49495284 C T LMBR1L Missense_Mutation p.D327N 0.21 tolerated(0.15) probably_damaging(1) TCGA-NJ-A55R-01 12 50190322 50190322 G A NCKAP5L Missense_Mutation p.P441S 0.17 tolerated(0.08) probably_damaging(0.999) TCGA-NJ-A55R-01 12 58109550 58109550 G T OS9 Missense_Mutation p.C196F 0.16 deleterious(0) probably_damaging(1) TCGA-NJ-A55R-01 12 64588290 64588290 G A C12orf66 Nonsense_Mutation p.Q224* 0.15 TCGA-NJ-A55R-01 12 68595540 68595540 A G IL26 3'UTR 0.21 TCGA-NJ-A55R-01 12 71974078 71974078 C A LGR5 Missense_Mutation p.A476D 0.24 deleterious(0) possibly_damaging(0.821) TCGA-NJ-A55R-01 12 75804383 75804383 G T GLIPR1L2 Missense_Mutation p.R135I 0.20 deleterious(0.01) possibly_damaging(0.877) TCGA-NJ-A55R-01 12 81101501 81101501 G T MYF6 Translation_Start_Site p.M1? 0.19 tolerated_low_confidence(0.1) benign(0) TCGA-NJ-A55R-01 12 81532956 81532956 G - ACSS3 Frame_Shift_Del p.V232* 0.14 TCGA-NJ-A55R-01 12 8211736 8211736 G A C3AR1 Missense_Mutation p.S349F 0.19 tolerated(1) benign(0.002) TCGA-NJ-A55R-01 13 20041365 20041365 C A TPTE2 Missense_Mutation p.R171I 0.27 deleterious(0) possibly_damaging(0.872) TCGA-NJ-A55R-01 13 23910188 23910188 T - SACS Frame_Shift_Del p.G2610Afs*15 0.23 TCGA-NJ-A55R-01 13 36700232 36700232 G T DCLK1 Silent p.R15R 0.11 TCGA-NJ-A55R-01 13 49086961 49086961 T G RCBTB2 Missense_Mutation p.L140F 0.07 tolerated(0.09) benign(0.036) TCGA-NJ-A55R-01 13 70681368 70681368 G T KLHL1 Missense_Mutation p.S155Y 0.25 deleterious_low_confidence(0.04) benign(0.232) TCGA-NJ-A55R-01 14 23512245 23512245 C T PSMB11 Missense_Mutation p.H271Y 0.17 tolerated_low_confidence(0.19) benign(0.026) TCGA-NJ-A55R-01 14 69259713 69259713 C A ZFP36L1 5'UTR 0.28 TCGA-NJ-A55R-01 14 81972490 81972490 T G SEL1L Silent p.R146R 0.23 TCGA-NJ-A55R-01 14 90650454 90650454 G A KCNK13 Splice_Site p.X112_splice 0.19 TCGA-NJ-A55R-01 14 90756952 90756952 C A NRDE2 Splice_Site p.X615_splice 0.23 TCGA-NJ-A55R-01 14 90782961 90782961 C A NRDE2 Missense_Mutation p.R123I 0.22 deleterious(0.03) benign(0.023) TCGA-NJ-A55R-01 14 93199083 93199083 C A LGMN Missense_Mutation p.A17S 0.17 tolerated(0.11) benign(0.059) TCGA-NJ-A55R-01 15 22383054 22383054 G A OR4N4 Silent p.V194V 0.18 TCGA-NJ-A55R-01 15 25321105 25321105 C A SNORD116-11 RNA 0.21 TCGA-NJ-A55R-01 15 25321113 25321113 A T SNORD116-11 RNA 0.21 TCGA-NJ-A55R-01 15 52488588 52488588 G A MYO5C Missense_Mutation p.A1638V 0.07 deleterious(0) probably_damaging(1) TCGA-NJ-A55R-01 15 52672056 52672056 C A MYO5A Nonsense_Mutation p.E688* 0.38 TCGA-NJ-A55R-01 15 58919977 58919978 - A ADAM10 Frame_Shift_Ins p.N428* 0.19 TCGA-NJ-A55R-01 15 63548753 63548753 T C RAB8B Missense_Mutation p.M125T 0.25 deleterious(0.02) probably_damaging(0.973) TCGA-NJ-A55R-01 15 73994861 73994861 G T CD276 Silent p.A115A 0.24 TCGA-NJ-A55R-01 15 86822927 86822927 T G AGBL1 Nonsense_Mutation p.Y665* 0.34 TCGA-NJ-A55R-01 16 26147276 26147276 C A HS3ST4 Missense_Mutation p.L360I 0.07 deleterious(0) probably_damaging(0.98) TCGA-NJ-A55R-01 16 2807886 2807886 A T SRRM2 Missense_Mutation p.D152V 0.12 unknown(0) TCGA-NJ-A55R-01 16 31373193 31373193 A T ITGAX Missense_Mutation p.E350V 0.22 deleterious(0) probably_damaging(0.989) TCGA-NJ-A55R-01 16 31374284 31374284 G T ITGAX Missense_Mutation p.C463F 0.28 deleterious(0) probably_damaging(0.998) TCGA-NJ-A55R-01 16 31414949 31414949 G C ITGAD Silent p.T229T 0.23 TCGA-NJ-A55R-01 16 50707434 50707434 G A SNX20 Silent p.Y278Y 0.35 TCGA-NJ-A55R-01 16 57685482 57685482 C T GPR56 Silent p.S145S 0.11 TCGA-NJ-A55R-01 16 71411575 71411575 G T CALB2 Silent p.A89A 0.23 TCGA-NJ-A55R-01 16 72832261 72832261 A T ZFHX3 Silent p.T1440T 0.09 TCGA-NJ-A55R-01 16 75513129 75513129 G T CHST6 Missense_Mutation p.L200M 0.29 deleterious(0) probably_damaging(1) TCGA-NJ-A55R-01 16 76461439 76461439 G A CNTNAP4 Missense_Mutation p.E136K 0.24 tolerated(0.32) benign(0.102) TCGA-NJ-A55R-01 16 88958857 88958857 T C CBFA2T3 Missense_Mutation p.N139S 0.20 tolerated(0.14) benign(0.014) TCGA-NJ-A55R-01 17 10428288 10428288 T C MYH2 Missense_Mutation p.D1586G 0.18 deleterious(0.01) probably_damaging(0.938) TCGA-NJ-A55R-01 17 11520887 11520887 C T DNAH9 Missense_Mutation p.P355L 0.22 probably_damaging(0.971) TCGA-NJ-A55R-01 17 11520888 11520888 G T DNAH9 Silent p.P355P 0.23 TCGA-NJ-A55R-01 17 11593217 11593217 G T DNAH9 Nonsense_Mutation p.E1360* 0.17 TCGA-NJ-A55R-01 17 11607714 11607714 C A DNAH9 Silent p.I1782I 0.13 TCGA-NJ-A55R-01 17 39119985 39119985 C T KRT39 Missense_Mutation p.G201D 0.25 deleterious(0.01) possibly_damaging(0.866) TCGA-NJ-A55R-01 17 39411800 39411800 A G KRTAP9-9 Missense_Mutation p.T55A 0.17 tolerated(0.06) unknown(0) TCGA-NJ-A55R-01 17 4352625 4352625 G A SPNS3 Missense_Mutation p.R289H 0.09 tolerated(0.12) benign(0.035) TCGA-NJ-A55R-01 17 48465443 48465443 C G LRRC59 Missense_Mutation p.Q160H 0.20 deleterious(0) probably_damaging(0.993) TCGA-NJ-A55R-01 17 56344885 56344885 G T LPO Silent p.R623R 0.20 TCGA-NJ-A55R-01 17 8139506 8139506 T A CTC1 Missense_Mutation p.Q316L 0.33 deleterious(0.02) benign(0.167) TCGA-NJ-A55R-01 17 9613325 9613325 G C USP43 Silent p.T688T 0.25 TCGA-NJ-A55R-01 18 14752854 14752854 G A ANKRD30B Missense_Mutation p.R118K 0.13 tolerated(0.19) benign(0.016) TCGA-NJ-A55R-01 18 14757862 14757862 C T ANKRD30B Silent p.G222G 0.19 TCGA-NJ-A55R-01 18 14822608 14822608 C A ANKRD30B Missense_Mutation p.T773N 0.40 tolerated(0.23) benign(0.001) TCGA-NJ-A55R-01 18 5398034 5398034 G A EPB41L3 Nonsense_Mutation p.Q820* 0.12 TCGA-NJ-A55R-01 18 59757811 59757811 C T PIGN Silent p.G727G 0.20 TCGA-NJ-A55R-01 19 10597491 10597491 C T KEAP1 Missense_Mutation p.G571D 0.23 deleterious(0) probably_damaging(1) TCGA-NJ-A55R-01 19 1220649 1220649 G T STK11 Nonsense_Mutation p.E223* 0.50 TCGA-NJ-A55R-01 19 1220652 1220652 A G STK11 Missense_Mutation p.I224V 0.48 deleterious(0.02) probably_damaging(0.998) TCGA-NJ-A55R-01 19 17516358 17516358 G T BST2 Nonsense_Mutation p.C9* 0.28 TCGA-NJ-A55R-01 19 20235970 20235970 G T CTC-260E6.2 RNA 0.31 TCGA-NJ-A55R-01 19 31038849 31038849 G A ZNF536 Splice_Site p.X775_splice 0.17 TCGA-NJ-A55R-01 19 43680055 43680055 T G PSG5 Missense_Mutation p.M226L 0.16 tolerated(0.09) benign(0.002) TCGA-NJ-A55R-01 19 51466621 51466621 C A KLK6 Nonsense_Mutation p.E128* 0.16 TCGA-NJ-A55R-01 19 51738461 51738461 T A CD33 Silent p.A265A 0.15 TCGA-NJ-A55R-01 19 51957991 51957991 C A SIGLEC8 Silent p.G365G 0.15 TCGA-NJ-A55R-01 19 52327394 52327394 C A FPR3 Silent p.A131A 0.10 TCGA-NJ-A55R-01 19 52394964 52394964 T A ZNF649 Missense_Mutation p.N142I 0.17 deleterious(0.01) possibly_damaging(0.569) TCGA-NJ-A55R-01 19 54072640 54072640 G T ZNF331 Splice_Site p.X3_splice 0.23 TCGA-NJ-A55R-01 19 55175255 55175255 G TT LILRB4 Frame_Shift_Ins p.I39Yfs*24 0.23 TCGA-NJ-A55R-01 19 56297072 56297072 A G NLRP11 Silent p.N1007N 0.30 TCGA-NJ-A55R-01 19 57746747 57746747 C T AURKC Nonsense_Mutation p.R298* 0.05 TCGA-NJ-A55R-01 19 58453703 58453703 C A ZNF256 Missense_Mutation p.S158I 0.15 deleterious(0) possibly_damaging(0.606) TCGA-NJ-A55R-01 19 9033621 9033621 G T MUC16 Missense_Mutation p.L12106M 0.30 possibly_damaging(0.881) TCGA-NJ-A55R-01 1 107961207 107961207 C A NTNG1 Intron 0.24 TCGA-NJ-A55R-01 1 107979390 107979390 G T NTNG1 Silent p.L453L 0.14 TCGA-NJ-A55R-01 1 11562003 11562003 C T PTCHD2 Silent p.P318P 0.07 TCGA-NJ-A55R-01 1 12919136 12919136 A T PRAMEF2 Missense_Mutation p.Q91L 0.27 deleterious(0.02) benign(0.005) TCGA-NJ-A55R-01 1 13001277 13001277 G T PRAMEF6 Missense_Mutation p.Q136K 0.11 tolerated(0.84) benign(0.076) TCGA-NJ-A55R-01 1 153910335 153910335 T A DENND4B Missense_Mutation p.H657L 0.19 tolerated(0.66) benign(0.031) TCGA-NJ-A55R-01 1 15440972 15440972 C A KAZN Silent p.P723P 0.24 TCGA-NJ-A55R-01 1 155912494 155912494 T A RXFP4 Missense_Mutation p.W332R 0.13 tolerated(0.16) benign(0.005) TCGA-NJ-A55R-01 1 158517445 158517445 C T OR6Y1 Missense_Mutation p.G151R 0.10 tolerated(0.07) possibly_damaging(0.653) TCGA-NJ-A55R-01 1 161173236 161173236 G T NDUFS2 Silent p.R35R 0.18 TCGA-NJ-A55R-01 1 161967618 161967618 T C OLFML2B Missense_Mutation p.I491V 0.09 tolerated(0.13) benign(0.393) TCGA-NJ-A55R-01 1 166904536 166904536 A G ILDR2 Splice_Site p.X294_splice 0.29 TCGA-NJ-A55R-01 1 167097487 167097487 A G DUSP27 Missense_Mutation p.Y1040C 0.24 deleterious(0) probably_damaging(0.944) TCGA-NJ-A55R-01 1 175372482 175372482 G A TNR Missense_Mutation p.T257I 0.08 tolerated(0.14) benign(0.008) TCGA-NJ-A55R-01 1 200860813 200860813 A C C1orf106 5'Flank 0.28 TCGA-NJ-A55R-01 1 200946363 200946363 G T KIF21B Silent p.A1434A 0.23 TCGA-NJ-A55R-01 1 212798781 212798781 C A FAM71A Missense_Mutation p.P188T 0.19 deleterious(0.04) probably_damaging(0.987) TCGA-NJ-A55R-01 1 226553694 226553694 A G PARP1 Silent p.H822H 0.12 TCGA-NJ-A55R-01 1 228210487 228210487 C A WNT3A Missense_Mutation p.P64H 0.18 tolerated(0.12) possibly_damaging(0.568) TCGA-NJ-A55R-01 1 228210488 228210488 C A WNT3A Silent p.P64P 0.19 TCGA-NJ-A55R-01 1 228462498 228462498 T C OBSCN Missense_Mutation p.V2345A 0.22 benign(0.014) TCGA-NJ-A55R-01 1 228487609 228487609 A T OBSCN Missense_Mutation p.M4501L 0.09 benign(0.008) TCGA-NJ-A55R-01 1 232649637 232649637 C A SIPA1L2 Silent p.G483G 0.16 TCGA-NJ-A55R-01 1 232649638 232649638 C A SIPA1L2 Missense_Mutation p.G483V 0.16 deleterious(0) probably_damaging(1) TCGA-NJ-A55R-01 1 237823308 237823308 A T RYR2 Silent p.G2744G 0.11 TCGA-NJ-A55R-01 1 237948056 237948056 G A RYR2 Silent p.E4348E 0.11 TCGA-NJ-A55R-01 1 238050678 238050678 C A ZP4 Missense_Mutation p.R246I 0.33 tolerated(0.44) benign(0.016) TCGA-NJ-A55R-01 1 247587673 247587673 G T NLRP3 Missense_Mutation p.A310S 0.27 tolerated(1) possibly_damaging(0.859) TCGA-NJ-A55R-01 1 247597576 247597576 G T NLRP3 Splice_Site p.X833_splice 0.28 TCGA-NJ-A55R-01 1 26513901 26513901 G T CNKSR1 Splice_Site p.X461_splice 0.30 TCGA-NJ-A55R-01 1 27745469 27745469 G A WASF2 Missense_Mutation p.P84L 0.21 deleterious(0) unknown(0) TCGA-NJ-A55R-01 1 39812877 39812877 G T MACF1 Intron 0.17 TCGA-NJ-A55R-01 1 45793448 45793448 G A HPDL Missense_Mutation p.G210R 0.17 deleterious(0.03) benign(0.263) TCGA-NJ-A55R-01 1 55078371 55078371 C A FAM151A Silent p.L196L 0.17 TCGA-NJ-A55R-01 1 6008139 6008139 G T NPHP4 Missense_Mutation p.S328Y 0.24 deleterious(0) probably_damaging(0.935) TCGA-NJ-A55R-01 1 68512912 68512912 C A DIRAS3 Silent p.L23L 0.16 TCGA-NJ-A55R-01 1 74701089 74701089 T C TNNI3K Intron 0.29 TCGA-NJ-A55R-01 1 91845681 91845681 A T HFM1 Nonsense_Mutation p.L329* 0.13 TCGA-NJ-A55R-01 1 93299218 93299221 GTAA - RPL5 Splice_Site p.X63_splice 0.31 TCGA-NJ-A55R-01 1 93744131 93744131 T G CCDC18 3'UTR 0.07 TCGA-NJ-A55R-01 1 97544653 97544653 C G DPYD Missense_Mutation p.C986S 0.12 deleterious(0) probably_damaging(1) TCGA-NJ-A55R-01 20 31390237 31390237 G C DNMT3B Missense_Mutation p.R731T 0.13 deleterious(0) probably_damaging(0.992) TCGA-NJ-A55R-01 20 34435328 34435328 G T PHF20 Silent p.P104P 0.11 TCGA-NJ-A55R-01 20 34761686 34761689 GCGT - EPB41L1 Intron 0.14 TCGA-NJ-A55R-01 20 35507481 35507481 C A TLDC2 Missense_Mutation p.P76H 0.30 deleterious(0) possibly_damaging(0.779) TCGA-NJ-A55R-01 20 55758925 55758925 G A BMP7 Nonsense_Mutation p.Q271* 0.20 TCGA-NJ-A55R-01 20 57415557 57415557 C A RP4-806M20.3 5'Flank 0.20 TCGA-NJ-A55R-01 20 57767984 57767984 C T ZNF831 Missense_Mutation p.A637V 0.20 deleterious(0.02) benign(0.196) TCGA-NJ-A55R-01 21 28212297 28212297 C G ADAMTS1 Missense_Mutation p.M583I 0.29 tolerated(0.38) benign(0.004) TCGA-NJ-A55R-01 22 18567976 18567976 C T PEX26 Missense_Mutation p.L256F 0.09 tolerated(0.42) benign(0.2) TCGA-NJ-A55R-01 22 21332293 21332293 G T AIFM3 Missense_Mutation p.Q492H 0.28 tolerated(1) benign(0.002) TCGA-NJ-A55R-01 22 35661239 35661239 G T HMGXB4 Silent p.G286G 0.18 TCGA-NJ-A55R-01 22 40661982 40661982 G T TNRC6B Missense_Mutation p.S583I 0.13 deleterious(0.05) benign(0.339) TCGA-NJ-A55R-01 22 46096245 46096245 C T ATXN10 Missense_Mutation p.P159S 0.24 deleterious(0) probably_damaging(0.989) TCGA-NJ-A55R-01 2 103149117 103149117 G T SLC9A4 Missense_Mutation p.R789S 0.14 deleterious_low_confidence(0.04) benign(0.016) TCGA-NJ-A55R-01 2 131883426 131883426 G T PLEKHB2 Missense_Mutation p.K46N 0.25 deleterious(0.01) probably_damaging(0.93) TCGA-NJ-A55R-01 2 158157473 158157473 C G GALNT5 Missense_Mutation p.P801A 0.23 deleterious(0.01) probably_damaging(0.94) TCGA-NJ-A55R-01 2 158272292 158272292 C A CYTIP Missense_Mutation p.G326V 0.16 deleterious(0) probably_damaging(1) TCGA-NJ-A55R-01 2 162873317 162873317 G A DPP4 Missense_Mutation p.P510S 0.19 deleterious(0) probably_damaging(0.916) TCGA-NJ-A55R-01 2 163027562 163027562 G T FAP Missense_Mutation p.S737Y 0.28 deleterious(0.01) benign(0.394) TCGA-NJ-A55R-01 2 179600298 179600298 C A TTN Missense_Mutation p.V4959F 0.15 TCGA-NJ-A55R-01 2 179641392 179641392 C A TTN Silent p.T1733T 0.27 TCGA-NJ-A55R-01 2 212587158 212587158 T G ERBB4 Silent p.A281A 0.19 TCGA-NJ-A55R-01 2 212587160 212587160 C A ERBB4 Missense_Mutation p.A281S 0.19 deleterious(0.03) possibly_damaging(0.462) TCGA-NJ-A55R-01 2 21263906 21263906 T C APOB Missense_Mutation p.Q96R 0.14 possibly_damaging(0.659) TCGA-NJ-A55R-01 2 212652753 212652753 C A ERBB4 Nonsense_Mutation p.G185* 0.18 TCGA-NJ-A55R-01 2 220022292 220022292 C A NHEJ1 Missense_Mutation p.D98Y 0.15 deleterious(0.05) probably_damaging(0.92) TCGA-NJ-A55R-01 2 225642911 225642911 G A DOCK10 Missense_Mutation p.L1916F 0.39 deleterious(0) probably_damaging(0.999) TCGA-NJ-A55R-01 2 230661362 230661362 G A TRIP12 Missense_Mutation p.A1179V 0.15 tolerated(0.61) benign(0.002) TCGA-NJ-A55R-01 2 230679845 230679845 T A TRIP12 Silent p.V519V 0.15 TCGA-NJ-A55R-01 2 242066565 242066565 C A PASK Missense_Mutation p.G589W 0.11 deleterious(0.01) possibly_damaging(0.773) TCGA-NJ-A55R-01 2 26357949 26357949 A T RAB10 3'UTR 0.47 TCGA-NJ-A55R-01 2 38525341 38525353 TCCCCAGAGTATT - ATL2 Frame_Shift_Del p.K522Sfs*8 0.15 TCGA-NJ-A55R-01 2 44132909 44132909 G A LRPPRC Missense_Mutation p.H1096Y 0.17 deleterious(0) possibly_damaging(0.696) TCGA-NJ-A55R-01 2 56419635 56419635 A T CCDC85A Missense_Mutation p.E100D 0.07 tolerated(0.55) possibly_damaging(0.741) TCGA-NJ-A55R-01 2 71043328 71043328 T G CLEC4F Missense_Mutation p.Q395H 0.12 deleterious(0.01) possibly_damaging(0.717) TCGA-NJ-A55R-01 2 77746674 77746674 C A LRRTM4 Silent p.G107G 0.24 TCGA-NJ-A55R-01 2 79350029 79350029 C A REG1A Silent p.A128A 0.15 TCGA-NJ-A55R-01 2 79384799 79384799 C G REG3A Missense_Mutation p.W120S 0.22 deleterious(0) probably_damaging(1) TCGA-NJ-A55R-01 2 86719304 86719304 G A KDM3A 3'UTR 0.12 TCGA-NJ-A55R-01 2 88367508 88367508 T A SMYD1 Missense_Mutation p.V42E 0.14 deleterious(0) probably_damaging(0.995) TCGA-NJ-A55R-01 2 89568031 89568031 C A IGKV1-33 Missense_Mutation p.M26I 0.13 deleterious(0.02) possibly_damaging(0.455) TCGA-NJ-A55R-01 2 90078276 90078276 G C IGKV3D-20 Missense_Mutation p.A105P 0.08 deleterious(0) probably_damaging(0.979) TCGA-NJ-A55R-01 3 109046827 109046827 C A DPPA4 3'UTR 0.23 TCGA-NJ-A55R-01 3 130159236 130159236 T C COL6A5 Silent p.S2018S 0.30 TCGA-NJ-A55R-01 3 134851891 134851891 G T EPHB1 Missense_Mutation p.A433S 0.10 deleterious(0.02) possibly_damaging(0.877) TCGA-NJ-A55R-01 3 134851892 134851892 G T EPHB1 Splice_Site p.X433_splice 0.10 TCGA-NJ-A55R-01 3 141497490 141497490 C A GRK7 Missense_Mutation p.P122T 0.26 tolerated(0.38) benign(0.158) TCGA-NJ-A55R-01 3 143704407 143704407 G T C3orf58 Missense_Mutation p.W227L 0.15 deleterious(0.02) possibly_damaging(0.881) TCGA-NJ-A55R-01 3 143704408 143704408 G T C3orf58 Missense_Mutation p.W227C 0.16 deleterious(0) probably_damaging(0.983) TCGA-NJ-A55R-01 3 155571743 155571744 CG T SLC33A1 Frame_Shift_Del p.R15Sfs*11 0.15 TCGA-NJ-A55R-01 3 167249008 167249008 C A WDR49 Missense_Mutation p.D353Y 0.16 deleterious(0.01) possibly_damaging(0.547) TCGA-NJ-A55R-01 3 171406513 171406513 C T PLD1 Missense_Mutation p.G498S 0.18 deleterious(0.05) probably_damaging(0.999) TCGA-NJ-A55R-01 3 183884013 183884013 C G DVL3 Missense_Mutation p.A288G 0.09 deleterious(0) probably_damaging(0.952) TCGA-NJ-A55R-01 3 191861864 191861864 A T FGF12 Silent p.R222R 0.23 TCGA-NJ-A55R-01 3 24138535 24138535 G T LINC00691 RNA 0.14 TCGA-NJ-A55R-01 3 25792606 25792606 G C NGLY1 Missense_Mutation p.A214G 0.20 deleterious(0) benign(0) TCGA-NJ-A55R-01 3 41973472 41973472 C G ULK4 Silent p.L135L 0.21 TCGA-NJ-A55R-01 3 424204 424204 G T CHL1 Nonsense_Mutation p.E676* 0.11 TCGA-NJ-A55R-01 3 48415121 48415121 A G FBXW12 Missense_Mutation p.H71R 0.21 tolerated(0.54) possibly_damaging(0.84) TCGA-NJ-A55R-01 3 52623110 52623110 C G PBRM1 Missense_Mutation p.E981Q 0.06 tolerated(0.09) benign(0.002) TCGA-NJ-A55R-01 3 6903551 6903551 G T GRM7 Missense_Mutation p.S159I 0.17 deleterious(0) possibly_damaging(0.583) TCGA-NJ-A55R-01 3 87017926 87017926 C A VGLL3 Missense_Mutation p.A251S 0.16 tolerated(0.66) benign(0.075) TCGA-NJ-A55R-01 3 89448515 89448515 T A EPHA3 Missense_Mutation p.N493K 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-NJ-A55R-01 3 98002185 98002185 T A OR5H2 Missense_Mutation p.F152I 0.19 tolerated(0.68) benign(0) TCGA-NJ-A55R-01 3 98073083 98073083 C A OR5K4 Missense_Mutation p.P129Q 0.14 deleterious(0) probably_damaging(1) TCGA-NJ-A55R-01 4 103647806 103647806 C T MANBA Missense_Mutation p.R71K 0.22 tolerated(0.14) benign(0.26) TCGA-NJ-A55R-01 4 113362530 113362530 G T ALPK1 3'UTR 0.21 TCGA-NJ-A55R-01 4 113362531 113362531 G T ALPK1 3'UTR 0.21 TCGA-NJ-A55R-01 4 114290868 114290868 C A ANK2 Missense_Mutation p.S3839R 0.23 benign(0.012) TCGA-NJ-A55R-01 4 126370440 126370440 G T FAT4 Missense_Mutation p.V2757L 0.16 possibly_damaging(0.78) TCGA-NJ-A55R-01 4 128719837 128719837 G A HSPA4L Silent p.K134K 0.18 TCGA-NJ-A55R-01 4 146475128 146475128 A G SMAD1 Missense_Mutation p.N397S 0.13 tolerated(0.24) benign(0.035) TCGA-NJ-A55R-01 4 189068074 189068074 G A TRIML1 Missense_Mutation p.D319N 0.24 tolerated(0.19) benign(0.151) TCGA-NJ-A55R-01 4 20852205 20852205 G C KCNIP4 Silent p.T83T 0.23 TCGA-NJ-A55R-01 4 38830296 38830296 C A TLR6 Missense_Mutation p.V267F 0.17 tolerated(0.3) benign(0.046) TCGA-NJ-A55R-01 4 38830297 38830297 C G TLR6 Silent p.L266L 0.17 TCGA-NJ-A55R-01 4 47746535 47746535 C A CORIN Missense_Mutation p.G228V 0.24 tolerated(0.07) possibly_damaging(0.891) TCGA-NJ-A55R-01 4 48996685 48996685 G - CWH43 Frame_Shift_Del p.M189Wfs*36 0.18 TCGA-NJ-A55R-01 4 57333827 57333836 TGTCAGTACC - SRP72 Frame_Shift_Del p.S10Rfs*6 0.22 TCGA-NJ-A55R-01 4 72620755 72620755 G A GC Silent p.T387T 0.18 TCGA-NJ-A55R-01 4 74853311 74853311 G A PPBP Silent p.T69T 0.17 TCGA-NJ-A55R-01 5 127664342 127664342 T C FBN2 Intron 0.15 TCGA-NJ-A55R-01 5 137496707 137496707 C A BRD8 Missense_Mutation p.R767L 0.06 deleterious(0.04) possibly_damaging(0.905) TCGA-NJ-A55R-01 5 140182408 140182408 G A PCDHA3 Silent p.V542V 0.20 TCGA-NJ-A55R-01 5 140215728 140215728 C G PCDHA7 Missense_Mutation p.A587G 0.18 deleterious_low_confidence(0.01) benign(0.323) TCGA-NJ-A55R-01 5 140603730 140603730 G T PCDHB14 Missense_Mutation p.G218V 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-NJ-A55R-01 5 140741263 140741263 G A PCDHGB2 Missense_Mutation p.D521N 0.20 deleterious(0) probably_damaging(0.999) TCGA-NJ-A55R-01 5 145537026 145537026 T A LARS Silent p.S335S 0.15 TCGA-NJ-A55R-01 5 149515136 149515136 G T PDGFRB Missense_Mutation p.L116I 0.23 tolerated(0.76) benign(0.003) TCGA-NJ-A55R-01 5 150923131 150923131 A G FAT2 Silent p.T2519T 0.24 TCGA-NJ-A55R-01 5 154396947 154396947 G T KIF4B Missense_Mutation p.E1176D 0.26 tolerated(0.89) benign(0.001) TCGA-NJ-A55R-01 5 169126462 169126462 G C DOCK2 Missense_Mutation p.G378R 0.07 deleterious(0) possibly_damaging(0.803) TCGA-NJ-A55R-01 5 169533165 169533165 C A FOXI1 Silent p.P68P 0.19 TCGA-NJ-A55R-01 5 40854201 40854201 G C CARD6 Missense_Mutation p.G923R 0.07 tolerated(0.87) benign(0.001) TCGA-NJ-A55R-01 5 41061673 41061673 T A MROH2B Missense_Mutation p.Q205L 0.17 tolerated(1) benign(0.002) TCGA-NJ-A55R-01 5 45645613 45645613 A T HCN1 Missense_Mutation p.W175R 0.23 deleterious(0) probably_damaging(0.996) TCGA-NJ-A55R-01 5 54527105 54527105 C G CCNO 3'UTR 0.24 TCGA-NJ-A55R-01 5 54557319 54557319 A G DHX29 Silent p.Y1279Y 0.25 TCGA-NJ-A55R-01 5 65334267 65334267 G A ERBB2IP Silent p.V421V 0.19 TCGA-NJ-A55R-01 5 7757687 7757687 C T ADCY2 Silent p.A694A 0.20 TCGA-NJ-A55R-01 5 79355604 79355604 G A THBS4 Missense_Mutation p.R288H 0.06 tolerated(0.14) benign(0.004) TCGA-NJ-A55R-01 5 79375746 79375746 G T THBS4 Missense_Mutation p.G844C 0.19 deleterious(0) probably_damaging(1) TCGA-NJ-A55R-01 6 107361034 107361034 G T C6orf203 Missense_Mutation p.G29C 0.24 deleterious(0.01) probably_damaging(0.913) TCGA-NJ-A55R-01 6 127471622 127471622 G T RSPO3 Missense_Mutation p.C114F 0.21 deleterious(0) probably_damaging(0.999) TCGA-NJ-A55R-01 6 131188650 131188650 T A EPB41L2 Missense_Mutation p.E893D 0.14 tolerated(0.31) probably_damaging(0.987) TCGA-NJ-A55R-01 6 157522483 157522483 C T ARID1B Silent p.P1585P 0.12 TCGA-NJ-A55R-01 6 161134115 161134115 C A PLG Missense_Mutation p.P169T 0.12 deleterious(0) possibly_damaging(0.881) TCGA-NJ-A55R-01 6 29141463 29141463 A G OR2J2 Silent p.G17G 0.05 TCGA-NJ-A55R-01 6 32190534 32190534 G A NOTCH4 Nonsense_Mutation p.Q69* 0.18 TCGA-NJ-A55R-01 6 42146129 42146129 G A GUCA1A Missense_Mutation p.G105S 0.11 deleterious(0) probably_damaging(1) TCGA-NJ-A55R-01 6 47846497 47846497 T C PTCHD4 Missense_Mutation p.I695V 0.24 tolerated(1) benign(0.001) TCGA-NJ-A55R-01 6 54804555 54804555 A T FAM83B Silent p.T262T 0.13 TCGA-NJ-A55R-01 6 54805230 54805230 C A FAM83B Silent p.T487T 0.26 TCGA-NJ-A55R-01 6 56458992 56458992 C A DST Splice_Site p.X1443_splice 0.20 TCGA-NJ-A55R-01 6 75847172 75847172 C G COL12A1 Missense_Mutation p.G1792A 0.12 benign(0.083) TCGA-NJ-A55R-01 6 8080245 8080245 C G EEF1E1 Missense_Mutation p.E135Q 0.19 deleterious(0.04) possibly_damaging(0.895) TCGA-NJ-A55R-01 7 100239142 100239142 C T TFR2 5'UTR 0.14 TCGA-NJ-A55R-01 7 100677445 100677445 C T MUC17 Silent p.T916T 0.04 TCGA-NJ-A55R-01 7 103230058 103230058 C A RELN Missense_Mutation p.R1377M 0.13 deleterious(0.01) possibly_damaging(0.871) TCGA-NJ-A55R-01 7 103270611 103270611 T C RELN Silent p.V826V 0.19 TCGA-NJ-A55R-01 7 128398933 128398933 G T CALU Missense_Mutation p.D150Y 0.21 deleterious(0.02) possibly_damaging(0.845) TCGA-NJ-A55R-01 7 142104244 142104244 G T TRBV6-9 Missense_Mutation p.T74N 0.23 tolerated(0.08) benign(0.116) TCGA-NJ-A55R-01 7 142326934 142326934 G T TRBV19 Missense_Mutation p.D78Y 0.15 deleterious(0) probably_damaging(1) TCGA-NJ-A55R-01 7 142723793 142723793 C T OR9A2 Missense_Mutation p.V143M 0.11 tolerated(0.29) benign(0.142) TCGA-NJ-A55R-01 7 143701237 143701237 C T OR6B1 Silent p.L50L 0.15 TCGA-NJ-A55R-01 7 143793096 143793096 C A OR2A12 Missense_Mutation p.A299D 0.25 deleterious(0.01) possibly_damaging(0.842) TCGA-NJ-A55R-01 7 143956724 143956724 C G OR2A7 5'UTR 0.10 TCGA-NJ-A55R-01 7 150269424 150269424 T A GIMAP4 Missense_Mutation p.I89N 0.22 deleterious(0) probably_damaging(0.987) TCGA-NJ-A55R-01 7 150325274 150325274 C T GIMAP6 Missense_Mutation p.E138K 0.26 deleterious(0) probably_damaging(0.979) TCGA-NJ-A55R-01 7 19184717 19184717 C A FERD3L Missense_Mutation p.G90V 0.36 tolerated(0.07) benign(0.094) TCGA-NJ-A55R-01 7 53103524 53103524 C T POM121L12 Missense_Mutation p.P54S 0.17 tolerated(0.31) benign(0.001) TCGA-NJ-A55R-01 7 6370132 6370132 G A FAM220A Silent p.P218P 0.16 TCGA-NJ-A55R-01 7 81355323 81355323 C A HGF Nonsense_Mutation p.E351* 0.26 TCGA-NJ-A55R-01 7 99274065 99274065 C T CYP3A5 Intron 0.13 TCGA-NJ-A55R-01 7 99274067 99274067 C T CYP3A5 Intron 0.13 TCGA-NJ-A55R-01 8 105368406 105368406 G A DCSTAMP Missense_Mutation p.A465T 0.12 tolerated(0.12) benign(0.035) TCGA-NJ-A55R-01 8 113651026 113651026 G T CSMD3 Missense_Mutation p.P1142H 0.16 deleterious(0) probably_damaging(1) TCGA-NJ-A55R-01 8 114389091 114389091 G A CSMD3 Intron 0.28 TCGA-NJ-A55R-01 8 121239565 121239565 A G COL14A1 Missense_Mutation p.E704G 0.21 tolerated(0.06) possibly_damaging(0.889) TCGA-NJ-A55R-01 8 131955652 131955652 T A ADCY8 Missense_Mutation p.Q433L 0.15 deleterious(0) probably_damaging(0.978) TCGA-NJ-A55R-01 8 133053389 133053389 T A OC90 Missense_Mutation p.H120L 0.31 deleterious(0) probably_damaging(0.999) TCGA-NJ-A55R-01 8 17601240 17601240 C G MTUS1 Missense_Mutation p.R720S 0.18 deleterious(0) probably_damaging(0.925) TCGA-NJ-A55R-01 8 21929835 21929835 A G DMTN Splice_Site p.X202_splice 0.20 TCGA-NJ-A55R-01 8 39080570 39080570 A T ADAM32 Silent p.S446S 0.15 TCGA-NJ-A55R-01 8 41551585 41551585 G T ANK1 Silent p.L1162L 0.15 TCGA-NJ-A55R-01 8 48874637 48874637 G T MCM4 Missense_Mutation p.S87I 0.12 deleterious(0) probably_damaging(0.988) TCGA-NJ-A55R-01 8 77690591 77690591 C A ZFHX4 Missense_Mutation p.Q1081K 0.19 benign(0.092) TCGA-NJ-A55R-01 8 77766583 77766583 C A ZFHX4 Missense_Mutation p.Q2476K 0.16 benign(0.006) TCGA-NJ-A55R-01 8 89053655 89053655 C T MMP16 3'UTR 0.22 TCGA-NJ-A55R-01 8 98735159 98735159 C T MTDH Missense_Mutation p.S525L 0.25 deleterious(0) benign(0.22) TCGA-NJ-A55R-01 9 104314043 104314043 G T RNF20 Missense_Mutation p.K450N 0.26 deleterious(0) benign(0.403) TCGA-NJ-A55R-01 9 113169428 113169428 C T SVEP1 Missense_Mutation p.D2818N 0.21 benign(0.006) TCGA-NJ-A55R-01 9 138588636 138588636 C T SOHLH1 Silent p.K161K 0.26 TCGA-NJ-A55R-01 9 32635575 32635575 C - TAF1L Frame_Shift_Del p.M1? 0.25 TCGA-NJ-A55R-01 9 8341179 8341179 C A PTPRD Missense_Mutation p.M1679I 0.24 deleterious(0.03) possibly_damaging(0.896) TCGA-NJ-A55R-01 9 84607902 84607902 G T SPATA31D1 Missense_Mutation p.E839D 0.16 tolerated(0.63) probably_damaging(0.966) TCGA-NJ-A55R-01 9 8518386 8518386 T A PTPRD Silent p.T335T 0.27 TCGA-NJ-A55R-01 X 105278240 105278240 G T SERPINA7 Missense_Mutation p.L344M 0.54 deleterious(0.01) probably_damaging(0.977) TCGA-NJ-A55R-01 X 132159518 132159518 G T USP26 Missense_Mutation p.Q911K 0.54 deleterious(0) possibly_damaging(0.877) TCGA-NJ-A55R-01 X 135106602 135106602 G T SLC9A6 Missense_Mutation p.G526C 0.38 deleterious(0) probably_damaging(0.991) TCGA-NJ-A55R-01 X 135453630 135453630 A T GPR112 Missense_Mutation p.M2514L 0.20 tolerated(0.07) benign(0.001) TCGA-NJ-A55R-01 X 13635972 13635972 C G EGFL6 Missense_Mutation p.P301R 0.43 deleterious(0.04) possibly_damaging(0.576) TCGA-NJ-A55R-01 X 154563924 154563924 C T CLIC2 5'UTR 0.38 TCGA-NJ-A55R-01 X 3242137 3242137 C A MXRA5 Missense_Mutation p.S530I 0.08 deleterious(0.01) probably_damaging(0.931) TCGA-NJ-A55R-01 X 36091481 36091481 G C CHDC2 Missense_Mutation p.R139T 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-NJ-A55R-01 X 50376865 50376865 T C SHROOM4 Silent p.P736P 0.37 TCGA-NJ-A55R-01 X 78216671 78216671 C A P2RY10 Silent p.T218T 0.54 TCGA-NJ-A55R-01 X 9622317 9622317 A T TBL1X Missense_Mutation p.S56C 0.43 deleterious(0) probably_damaging(0.966) TCGA-NJ-A7XG-01 11 122931957 122931957 C T HSPA8 Missense_Mutation p.V26I 0.08 deleterious_low_confidence(0.02) probably_damaging(0.993) TCGA-NJ-A7XG-01 12 111923117 111923117 T C ATXN2 Missense_Mutation p.M986V 0.22 benign(0.109) TCGA-NJ-A7XG-01 13 109672153 109672153 A T MYO16 Missense_Mutation p.E875V 0.17 deleterious(0.01) possibly_damaging(0.904) TCGA-NJ-A7XG-01 13 110826988 110826988 C T COL4A1 Missense_Mutation p.G1103R 0.28 probably_damaging(1) TCGA-NJ-A7XG-01 13 113158371 113158371 C T TUBGCP3 Missense_Mutation p.R761H 0.37 deleterious(0.04) benign(0.43) TCGA-NJ-A7XG-01 13 45517629 45517629 T - NUFIP1 Frame_Shift_Del p.N440Tfs*20 0.11 TCGA-NJ-A7XG-01 14 65262267 65262267 C A SPTB Missense_Mutation p.V478L 0.09 deleterious(0) probably_damaging(0.945) TCGA-NJ-A7XG-01 16 16110391 16110391 C T ABCC1 Silent p.Y176Y 0.10 TCGA-NJ-A7XG-01 16 70916681 70916681 T - HYDIN Frame_Shift_Del p.N3366Tfs*33 0.10 TCGA-NJ-A7XG-01 16 7759118 7759118 C T RBFOX1 Silent p.Y373Y 0.14 TCGA-NJ-A7XG-01 17 131592 131592 C T RPH3AL Silent p.L135L 0.09 TCGA-NJ-A7XG-01 19 38847409 38847410 AA - CATSPERG Frame_Shift_Del p.E408Vfs*5 0.26 TCGA-NJ-A7XG-01 19 49447726 49447727 - T DHDH Frame_Shift_Ins p.Y287Lfs*2 0.12 TCGA-NJ-A7XG-01 19 57743479 57743479 G T AURKC Silent p.R61R 0.29 TCGA-NJ-A7XG-01 1 110882665 110882665 G A RBM15 Missense_Mutation p.G213E 0.11 tolerated(0.72) benign(0.339) TCGA-NJ-A7XG-01 1 152281593 152281593 G A FLG Silent p.D1923D 0.29 TCGA-NJ-A7XG-01 1 155450824 155450824 C T ASH1L Missense_Mutation p.V613I 0.11 tolerated_low_confidence(0.62) benign(0.001) TCGA-NJ-A7XG-01 1 167097281 167097281 A G DUSP27 Silent p.T971T 0.08 TCGA-NJ-A7XG-01 1 201195052 201195052 G A IGFN1 Silent p.P3529P 0.24 TCGA-NJ-A7XG-01 1 213146031 213146031 C T VASH2 Missense_Mutation p.R159C 0.08 tolerated(0.06) benign(0.002) TCGA-NJ-A7XG-01 21 43519262 43519262 C T UMODL1 Silent p.D386D 0.16 TCGA-NJ-A7XG-01 22 31738931 31738931 G A PATZ1 Silent p.N429N 0.07 TCGA-NJ-A7XG-01 22 32289710 32289710 G A DEPDC5 Silent p.A1383A 0.19 TCGA-NJ-A7XG-01 2 160035603 160035603 C G TANC1 Missense_Mutation p.C813W 0.40 deleterious(0.02) probably_damaging(0.977) TCGA-NJ-A7XG-01 2 207603219 207603219 G T MDH1B Silent p.T515T 0.21 TCGA-NJ-A7XG-01 2 32670594 32670594 G T BIRC6 Missense_Mutation p.V1448F 0.23 benign(0.098) TCGA-NJ-A7XG-01 2 80136761 80136761 G T CTNNA2 Missense_Mutation p.R298S 0.07 tolerated(0.47) possibly_damaging(0.623) TCGA-NJ-A7XG-01 3 125250829 125250829 A T OSBPL11 Missense_Mutation p.L685Q 0.28 deleterious(0) probably_damaging(0.988) TCGA-NJ-A7XG-01 3 160804565 160804565 G A B3GALNT1 5'UTR 0.50 TCGA-NJ-A7XG-01 3 187086254 187086254 G C RTP4 Missense_Mutation p.E9Q 0.16 tolerated(0.07) probably_damaging(0.947) TCGA-NJ-A7XG-01 3 48691198 48691198 G A CELSR3 Missense_Mutation p.R1768C 0.13 tolerated(0.18) possibly_damaging(0.453) TCGA-NJ-A7XG-01 4 142145649 142145649 C T ZNF330 Silent p.D43D 0.07 TCGA-NJ-A7XG-01 4 174254749 174254749 A G HMGB2 Missense_Mutation p.F18L 0.07 deleterious(0.02) benign(0.423) TCGA-NJ-A7XG-01 4 20525792 20525792 G A SLIT2 Missense_Mutation p.R477H 0.37 deleterious(0) probably_damaging(0.997) TCGA-NJ-A7XG-01 4 44713072 44713072 C A GNPDA2 Missense_Mutation p.M164I 0.22 tolerated_low_confidence(0.23) benign(0.039) TCGA-NJ-A7XG-01 4 91230524 91230524 A C CCSER1 Silent p.S363S 0.17 TCGA-NJ-A7XG-01 5 640617 640617 G A CEP72 Silent p.L479L 0.34 TCGA-NJ-A7XG-01 6 152485433 152485433 T A SYNE1 Silent p.V7885V 0.51 TCGA-NJ-A7XG-01 6 3155016 3155016 C A TUBB2A Missense_Mutation p.G140V 0.27 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-NJ-A7XG-01 7 100349562 100349562 C A ZAN Missense_Mutation p.P612T 0.12 benign(0.099) TCGA-NJ-A7XG-01 7 121726195 121726195 G A AASS Silent p.A685A 0.35 TCGA-NJ-A7XG-01 7 45109505 45109505 C T CCM2 Silent p.D251D 0.09 TCGA-NJ-A7XG-01 7 48626853 48626853 C A ABCA13 Missense_Mutation p.A4870D 0.44 probably_damaging(1) TCGA-NJ-A7XG-01 7 4900797 4900797 C T PAPOLB Silent p.V214V 0.29 TCGA-NJ-A7XG-01 9 107360970 107360970 G C OR13C5 Nonsense_Mutation p.S242* 0.22 TCGA-NJ-A7XG-01 X 144905777 144905777 C A SLITRK2 Missense_Mutation p.L612I 0.14 tolerated(0.21) benign(0.001) TCGA-O1-A52J-01 10 108589332 108589332 C A SORCS1 Missense_Mutation p.K242N 0.42 tolerated(0.07) probably_damaging(0.962) TCGA-O1-A52J-01 10 117059672 117059672 A G ATRNL1 Silent p.A848A 0.37 TCGA-O1-A52J-01 10 124266402 124266402 G A HTRA1 Splice_Site p.X324_splice 0.34 TCGA-O1-A52J-01 10 18825059 18825059 G T CACNB2 Silent p.G412G 0.15 TCGA-O1-A52J-01 10 27703117 27703117 C A PTCHD3 Silent p.P21P 0.11 TCGA-O1-A52J-01 10 69961614 69961614 C T MYPN Silent p.I1174I 0.19 TCGA-O1-A52J-01 10 72434380 72434380 C T ADAMTS14 Missense_Mutation p.R51C 0.18 deleterious(0) probably_damaging(0.989) TCGA-O1-A52J-01 10 92617313 92617313 G T HTR7 Missense_Mutation p.P39Q 0.36 tolerated_low_confidence(0.36) benign(0.238) TCGA-O1-A52J-01 11 112088566 112088566 A T BCO2 Missense_Mutation p.Y570F 0.17 tolerated(0.06) probably_damaging(0.999) TCGA-O1-A52J-01 11 13729573 13729573 T G FAR1 Missense_Mutation p.D164E 0.43 tolerated(0.77) benign(0.001) TCGA-O1-A52J-01 11 193101 193101 T A SCGB1C1 Translation_Start_Site p.M1? 0.22 deleterious(0) probably_damaging(0.916) TCGA-O1-A52J-01 11 55135910 55135910 C A OR4A15 Nonsense_Mutation p.S184* 0.28 TCGA-O1-A52J-01 11 55659073 55659073 C A TRIM51 Missense_Mutation p.P442T 0.23 deleterious(0.01) possibly_damaging(0.9) TCGA-O1-A52J-01 11 59210985 59210985 G T OR5A1 Missense_Mutation p.C115F 0.34 deleterious(0.01) probably_damaging(0.982) TCGA-O1-A52J-01 11 62519459 62519459 G A ZBTB3 3'UTR 0.35 TCGA-O1-A52J-01 11 6292370 6292370 C A CCKBR Missense_Mutation p.P314Q 0.35 tolerated(0.44) benign(0.008) TCGA-O1-A52J-01 11 65271136 65271137 AT - MALAT1 RNA 0.21 TCGA-O1-A52J-01 11 66039733 66039733 G A RAB1B Intron 0.17 TCGA-O1-A52J-01 11 71724656 71724656 C A NUMA1 Missense_Mutation p.R1298L 0.32 probably_damaging(0.999) TCGA-O1-A52J-01 11 73584443 73584443 T C COA4 Intron 0.25 TCGA-O1-A52J-01 11 8413955 8413955 C A STK33 3'UTR 0.32 TCGA-O1-A52J-01 12 117658021 117658021 G T NOS1 Silent p.A1377A 0.28 TCGA-O1-A52J-01 12 122380855 122380855 G T WDR66 Nonsense_Mutation p.E389* 0.33 TCGA-O1-A52J-01 12 130833896 130833896 A T PIWIL1 Missense_Mutation p.M283L 0.35 tolerated(0.14) possibly_damaging(0.604) TCGA-O1-A52J-01 12 46764611 46764611 T A SLC38A2 Missense_Mutation p.Q49L 0.16 deleterious(0.04) benign(0.065) TCGA-O1-A52J-01 12 54963355 54963355 G C PDE1B Missense_Mutation p.V146L 0.29 tolerated(0.15) benign(0.045) TCGA-O1-A52J-01 12 72372748 72372748 G T TPH2 Silent p.T274T 0.53 TCGA-O1-A52J-01 12 95602903 95602903 A - FGD6 Frame_Shift_Del p.E720Sfs*74 0.34 TCGA-O1-A52J-01 13 109610081 109610081 T G MYO16 Silent p.R635R 0.43 TCGA-O1-A52J-01 13 50489242 50489242 G A SPRYD7 Missense_Mutation p.P183L 0.42 deleterious(0) probably_damaging(1) TCGA-O1-A52J-01 13 73346395 73346395 C A DIS3 Missense_Mutation p.D469Y 0.48 deleterious(0) probably_damaging(1) TCGA-O1-A52J-01 13 92003447 92003447 A C MIR17HG RNA 0.45 TCGA-O1-A52J-01 14 23354157 23354157 C A REM2 Silent p.G126G 0.25 TCGA-O1-A52J-01 14 38679639 38679639 G T SSTR1 Nonsense_Mutation p.E349* 0.47 TCGA-O1-A52J-01 14 53513433 53513433 T G DDHD1 3'UTR 0.08 TCGA-O1-A52J-01 15 30026560 30026560 G A TJP1 Silent p.I478I 0.19 TCGA-O1-A52J-01 15 43826763 43826763 C T PPIP5K1 3'UTR 0.12 TCGA-O1-A52J-01 15 50303081 50303081 C A ATP8B4 Silent p.V132V 0.14 TCGA-O1-A52J-01 15 50544885 50544885 C A HDC Missense_Mutation p.G292W 0.39 deleterious(0) probably_damaging(1) TCGA-O1-A52J-01 15 65490240 65490240 C A CILP Missense_Mutation p.R795L 0.46 deleterious(0) probably_damaging(0.994) TCGA-O1-A52J-01 15 84255752 84255752 G T SH3GL3 Missense_Mutation p.Q214H 0.48 deleterious(0.03) probably_damaging(0.999) TCGA-O1-A52J-01 15 89398465 89398465 T A ACAN Missense_Mutation p.S883R 0.33 deleterious(0.01) benign(0.222) TCGA-O1-A52J-01 15 99512854 99512854 G C PGPEP1L Silent p.T57T 0.36 TCGA-O1-A52J-01 16 14341060 14341060 C T MKL2 Missense_Mutation p.S648F 0.42 deleterious(0.03) benign(0.261) TCGA-O1-A52J-01 16 14341061 14341061 C T MKL2 Silent p.S648S 0.42 TCGA-O1-A52J-01 16 15528477 15528477 G T C16orf45 5'UTR 0.49 TCGA-O1-A52J-01 16 29675721 29675721 T C SPN Silent p.S224S 0.40 TCGA-O1-A52J-01 16 3097464 3097464 G T MMP25 Missense_Mutation p.A50S 0.27 tolerated(0.18) probably_damaging(1) TCGA-O1-A52J-01 16 3640068 3640068 G A SLX4 Silent p.L1191L 0.10 TCGA-O1-A52J-01 16 47143562 47143562 C A NETO2 Missense_Mutation p.V239F 0.45 deleterious(0) probably_damaging(0.996) TCGA-O1-A52J-01 16 50733866 50733866 G T NOD2 Splice_Site p.X180_splice 0.30 TCGA-O1-A52J-01 16 68395558 68395558 C T SMPD3 Missense_Mutation p.R605H 0.05 deleterious(0) probably_damaging(0.998) TCGA-O1-A52J-01 16 83065729 83065729 G A CDH13 Missense_Mutation p.G138D 0.27 tolerated(0.55) possibly_damaging(0.7) TCGA-O1-A52J-01 16 86544433 86544433 G T FOXF1 Silent p.R86R 0.52 TCGA-O1-A52J-01 16 86613379 86613379 G A FOXL1 3'UTR 0.13 TCGA-O1-A52J-01 17 11584138 11584138 G C DNAH9 Missense_Mutation p.Q1225H 0.58 benign(0.005) TCGA-O1-A52J-01 17 4836514 4836514 G C GP1BA Missense_Mutation p.K205N 0.35 tolerated(0.07) probably_damaging(0.977) TCGA-O1-A52J-01 17 54990997 54990997 G T TRIM25 Missense_Mutation p.T118K 0.23 deleterious(0) probably_damaging(0.997) TCGA-O1-A52J-01 17 60663513 60663513 G C TLK2 Missense_Mutation p.E462D 0.30 tolerated(0.09) benign(0.16) TCGA-O1-A52J-01 17 65887991 65887991 G T BPTF Silent p.G632G 0.37 TCGA-O1-A52J-01 17 7577046 7577046 C A TP53 Nonsense_Mutation p.E298* 0.37 TCGA-O1-A52J-01 17 7604137 7604137 G C WRAP53 Missense_Mutation p.D241H 0.48 tolerated(0.07) possibly_damaging(0.868) TCGA-O1-A52J-01 17 76201206 76201206 C T AFMID Missense_Mutation p.A167V 0.21 deleterious(0) possibly_damaging(0.856) TCGA-O1-A52J-01 18 23845153 23845153 T A TAF4B Missense_Mutation p.S121R 0.03 deleterious(0) possibly_damaging(0.774) TCGA-O1-A52J-01 18 31323859 31323859 T C ASXL3 Silent p.N1349N 0.33 TCGA-O1-A52J-01 18 43514841 43514841 C A EPG5 Nonsense_Mutation p.E731* 0.37 TCGA-O1-A52J-01 18 50866136 50866136 T A DCC Missense_Mutation p.C740S 0.48 tolerated(1) benign(0) TCGA-O1-A52J-01 18 9887154 9887154 G C TXNDC2 Missense_Mutation p.K226N 0.43 tolerated(0.34) benign(0.382) TCGA-O1-A52J-01 19 53138365 53138365 C A ZNF83 5'UTR 0.39 TCGA-O1-A52J-01 19 55349285 55349285 T - KIR2DS4 Frame_Shift_Del p.Y109Ifs*13 0.30 TCGA-O1-A52J-01 19 58101737 58101737 G T ZIK1 Silent p.L186L 0.49 TCGA-O1-A52J-01 19 58639494 58639494 C G ZNF329 Missense_Mutation p.Q459H 0.53 deleterious(0.02) probably_damaging(0.946) TCGA-O1-A52J-01 1 115828696 115828696 C T NGF Missense_Mutation p.A241T 0.26 deleterious_low_confidence(0.02) benign(0.287) TCGA-O1-A52J-01 1 158389805 158389805 C A OR10K2 Missense_Mutation p.L284F 0.37 deleterious(0.02) possibly_damaging(0.796) TCGA-O1-A52J-01 1 158670381 158670381 C A OR6K2 Missense_Mutation p.W21L 0.31 tolerated(0.65) benign(0.017) TCGA-O1-A52J-01 1 161695973 161695973 T C FCRLB Intron 0.39 TCGA-O1-A52J-01 1 169529934 169529934 G T F5 Nonsense_Mutation p.Y148* 0.09 TCGA-O1-A52J-01 1 170916688 170916688 C A MROH9 Missense_Mutation p.Q16K 0.22 tolerated_low_confidence(0.15) benign(0.114) TCGA-O1-A52J-01 1 220091644 220091644 G A SLC30A10 Missense_Mutation p.A304V 0.10 tolerated(0.75) benign(0.008) TCGA-O1-A52J-01 1 220154195 220154195 C A EPRS Missense_Mutation p.W1153L 0.31 deleterious(0) probably_damaging(1) TCGA-O1-A52J-01 1 230805105 230805105 A G COG2 Missense_Mutation p.I200V 0.49 deleterious(0.02) possibly_damaging(0.883) TCGA-O1-A52J-01 1 237893641 237893641 G A RYR2 Silent p.L3640L 0.44 TCGA-O1-A52J-01 1 243581331 243581331 A G SDCCAG8 Silent p.E602E 0.46 TCGA-O1-A52J-01 1 2453203 2453203 A C PANK4 Missense_Mutation p.V54G 0.37 tolerated(0.1) probably_damaging(0.975) TCGA-O1-A52J-01 1 248309060 248309060 T C OR2M5 Missense_Mutation p.I204T 0.41 deleterious(0.01) benign(0.41) TCGA-O1-A52J-01 1 248402960 248402960 C A OR2M4 Missense_Mutation p.H244N 0.34 deleterious(0.02) benign(0.443) TCGA-O1-A52J-01 1 248756338 248756338 G A OR2T10 Silent p.H244H 0.22 TCGA-O1-A52J-01 1 27278435 27278435 C A C1orf172 Missense_Mutation p.R146L 0.11 deleterious(0.03) probably_damaging(0.937) TCGA-O1-A52J-01 1 52289394 52289394 T A NRD1 Missense_Mutation p.R435S 0.23 deleterious(0.01) possibly_damaging(0.845) TCGA-O1-A52J-01 1 52849168 52849168 C A ORC1 Missense_Mutation p.R646L 0.15 deleterious(0) possibly_damaging(0.565) TCGA-O1-A52J-01 20 23028857 23028857 C T THBD Missense_Mutation p.E429K 0.07 deleterious(0.01) possibly_damaging(0.491) TCGA-O1-A52J-01 20 31625517 31625517 C A BPIFB6 Silent p.S273S 0.33 TCGA-O1-A52J-01 20 41306789 41306789 C A PTPRT Silent p.T290T 0.33 TCGA-O1-A52J-01 20 44685848 44685848 G T SLC12A5 Silent p.R1078R 0.29 TCGA-O1-A52J-01 20 44757644 44757645 AA - CD40 Frame_Shift_Del p.K267Rfs*39 0.10 TCGA-O1-A52J-01 20 50400740 50400740 C T SALL4 3'UTR 0.21 TCGA-O1-A52J-01 20 62595681 62595681 C T ZNF512B Missense_Mutation p.G442E 0.25 deleterious(0) probably_damaging(1) TCGA-O1-A52J-01 21 10996059 10996059 A T TPTE RNA 0.20 TCGA-O1-A52J-01 21 32127527 32127527 C A KRTAP21-1 Missense_Mutation p.G57V 0.65 deleterious_low_confidence(0) unknown(0) TCGA-O1-A52J-01 22 36681751 36681751 C A MYH9 Missense_Mutation p.G1743C 0.27 benign(0.03) TCGA-O1-A52J-01 22 37458588 37458588 G A KCTD17 Missense_Mutation p.G283E 0.19 deleterious_low_confidence(0.01) benign(0.217) TCGA-O1-A52J-01 22 50728156 50728156 C T PLXNB2 Silent p.A286A 0.36 TCGA-O1-A52J-01 2 1271287 1271287 G T SNTG2 Missense_Mutation p.A410S 0.33 deleterious(0.02) possibly_damaging(0.493) TCGA-O1-A52J-01 2 135738524 135738524 C A MAP3K19 Missense_Mutation p.G1263W 0.30 deleterious(0) probably_damaging(1) TCGA-O1-A52J-01 2 141267533 141267533 G C LRP1B Missense_Mutation p.P2788A 0.27 possibly_damaging(0.822) TCGA-O1-A52J-01 2 141609303 141609303 C G LRP1B Missense_Mutation p.M1543I 0.24 benign(0) TCGA-O1-A52J-01 2 14774438 14774438 C A FAM84A Missense_Mutation p.A112E 0.27 deleterious(0.01) benign(0.028) TCGA-O1-A52J-01 2 155252572 155252572 C T GALNT13 Missense_Mutation p.P409L 0.26 deleterious(0) benign(0.027) TCGA-O1-A52J-01 2 164467270 164467270 T C FIGN Missense_Mutation p.N358D 0.32 tolerated(0.72) benign(0.001) TCGA-O1-A52J-01 2 185463645 185463645 C A ZNF804A 5'UTR 0.48 TCGA-O1-A52J-01 2 204591706 204591706 G A CD28 Missense_Mutation p.V135M 0.06 deleterious(0) probably_damaging(0.988) TCGA-O1-A52J-01 2 225653864 225653864 C A DOCK10 Missense_Mutation p.A1779S 0.17 deleterious(0.05) possibly_damaging(0.684) TCGA-O1-A52J-01 2 233349783 233349783 C A ECEL1 Missense_Mutation p.V292L 0.21 tolerated(0.3) benign(0.005) TCGA-O1-A52J-01 2 27352734 27352734 C T ABHD1 Missense_Mutation p.P244S 0.29 deleterious(0.03) possibly_damaging(0.562) TCGA-O1-A52J-01 2 64139749 64139749 C A VPS54 Silent p.V823V 0.35 TCGA-O1-A52J-01 2 86998696 86998696 G T RMND5A Missense_Mutation p.G325C 0.33 deleterious(0) probably_damaging(1) TCGA-O1-A52J-01 2 90044203 90044203 T A IGKV2D-24 Missense_Mutation p.S42T 0.39 tolerated(0.08) benign(0.137) TCGA-O1-A52J-01 3 100963435 100963435 T C IMPG2 Silent p.L580L 0.37 TCGA-O1-A52J-01 3 107491536 107491536 C T BBX Missense_Mutation p.S323F 0.32 deleterious(0.04) benign(0.003) TCGA-O1-A52J-01 3 12977614 12977614 G A IQSEC1 Missense_Mutation p.P315L 0.40 tolerated_low_confidence(0.07) benign(0.077) TCGA-O1-A52J-01 3 136664548 136664548 A G NCK1 Missense_Mutation p.Y117C 0.20 deleterious(0.03) benign(0.35) TCGA-O1-A52J-01 3 136664575 136664575 C T NCK1 Missense_Mutation p.S126L 0.16 deleterious(0.01) possibly_damaging(0.904) TCGA-O1-A52J-01 3 137811326 137811326 C G DZIP1L Missense_Mutation p.E257Q 0.24 deleterious(0.04) benign(0.132) TCGA-O1-A52J-01 3 147114046 147114046 G C ZIC4 Missense_Mutation p.A144G 0.39 tolerated(0.31) probably_damaging(0.956) TCGA-O1-A52J-01 3 148562355 148562355 T C CPB1 Missense_Mutation p.Y223H 0.35 deleterious(0.01) probably_damaging(1) TCGA-O1-A52J-01 3 164906830 164906830 G T SLITRK3 Missense_Mutation p.L597I 0.34 tolerated(0.2) benign(0.034) TCGA-O1-A52J-01 3 165548190 165548190 G C BCHE Missense_Mutation p.A211G 0.35 tolerated(0.07) benign(0.024) TCGA-O1-A52J-01 3 189582051 189582051 C A TP63 Missense_Mutation p.Q204K 0.31 deleterious(0.05) probably_damaging(0.975) TCGA-O1-A52J-01 3 190347396 190347396 G C IL1RAP Intron 0.47 TCGA-O1-A52J-01 3 194392925 194392925 C A LSG1 5'UTR 0.44 TCGA-O1-A52J-01 3 197562608 197562608 A C LRCH3 Missense_Mutation p.E389A 0.38 deleterious(0.01) possibly_damaging(0.579) TCGA-O1-A52J-01 3 46306673 46306673 T A CCR3 Silent p.V29V 0.17 TCGA-O1-A52J-01 3 49877210 49877210 T G TRAIP Missense_Mutation p.L293F 0.31 tolerated(0.79) benign(0.001) TCGA-O1-A52J-01 4 119951945 119951945 A T SYNPO2 Missense_Mutation p.E672V 0.21 deleterious(0) probably_damaging(1) TCGA-O1-A52J-01 4 148653597 148653597 G T ARHGAP10 Missense_Mutation p.A49S 0.43 deleterious(0.01) benign(0.002) TCGA-O1-A52J-01 4 166976306 166976306 C T TLL1 Missense_Mutation p.R535C 0.49 deleterious(0.02) probably_damaging(0.972) TCGA-O1-A52J-01 4 189012877 189012877 G C TRIML2 Missense_Mutation p.H272D 0.19 tolerated(0.33) benign(0.005) TCGA-O1-A52J-01 4 39329255 39329272 CTTGGTCTTAGTGTTTTC - RFC1 In_Frame_Del p.E146_K151del 0.50 TCGA-O1-A52J-01 4 39409225 39409225 A G KLB Missense_Mutation p.N219S 0.04 tolerated(0.55) benign(0.344) TCGA-O1-A52J-01 4 40434756 40434756 T C RBM47 Missense_Mutation p.D485G 0.35 deleterious_low_confidence(0) benign(0.075) TCGA-O1-A52J-01 4 62849186 62849186 A C LPHN3 Missense_Mutation p.Y966S 0.14 deleterious(0) probably_damaging(1) TCGA-O1-A52J-01 4 66201747 66201747 G T EPHA5 Silent p.R919R 0.34 TCGA-O1-A52J-01 4 69811034 69811034 G A UGT2A3 Missense_Mutation p.A285V 0.17 deleterious(0.01) benign(0.039) TCGA-O1-A52J-01 4 9987363 9987363 C A SLC2A9 Missense_Mutation p.M155I 0.45 deleterious(0) possibly_damaging(0.877) TCGA-O1-A52J-01 5 118965321 118965321 C G FAM170A 5'UTR 0.14 TCGA-O1-A52J-01 5 140475181 140475181 G T PCDHB2 Missense_Mutation p.R269S 0.11 tolerated_low_confidence(0.19) benign(0.014) TCGA-O1-A52J-01 5 140554715 140554715 C A PCDHB7 Missense_Mutation p.P767T 0.16 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-O1-A52J-01 5 140554716 140554716 C A PCDHB7 Missense_Mutation p.P767Q 0.17 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-O1-A52J-01 5 140574146 140574146 C A PCDHB10 Missense_Mutation p.P674Q 0.71 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-O1-A52J-01 5 140603151 140603151 G A PCDHB14 Missense_Mutation p.R25Q 0.15 tolerated_low_confidence(0.71) benign(0) TCGA-O1-A52J-01 5 140719187 140719187 G T PCDHGA2 Missense_Mutation p.G217W 0.53 deleterious_low_confidence(0) probably_damaging(1) TCGA-O1-A52J-01 5 140719188 140719188 G T PCDHGA2 Missense_Mutation p.G217V 0.53 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-O1-A52J-01 5 141039448 141039448 C A ARAP3 Missense_Mutation p.L1055F 0.55 deleterious(0) probably_damaging(1) TCGA-O1-A52J-01 5 148579953 148579953 T C ABLIM3 Missense_Mutation p.M137T 0.48 tolerated(0.21) benign(0.012) TCGA-O1-A52J-01 5 5237155 5237155 A T ADAMTS16 Missense_Mutation p.K699N 0.65 deleterious(0.02) possibly_damaging(0.846) TCGA-O1-A52J-01 5 65105928 65105928 G T NLN Silent p.S593S 0.13 TCGA-O1-A52J-01 5 79030789 79030789 T C CMYA5 Silent p.S2067S 0.64 TCGA-O1-A52J-01 5 82833844 82833845 - A VCAN Frame_Shift_Ins p.R1675Kfs*9 0.32 TCGA-O1-A52J-01 6 100895209 100895209 C T SIM1 Silent p.A311A 0.09 TCGA-O1-A52J-01 6 117243315 117243315 G T RFX6 Splice_Site p.X479_splice 0.39 TCGA-O1-A52J-01 6 129380944 129380944 C A LAMA2 Missense_Mutation p.T100K 0.19 deleterious(0.01) benign(0.102) TCGA-O1-A52J-01 6 152671903 152671903 T A SYNE1 Silent p.S3861S 0.30 TCGA-O1-A52J-01 6 165715557 165715557 C G C6orf118 Missense_Mutation p.R85P 0.28 tolerated(0.08) benign(0.177) TCGA-O1-A52J-01 6 33693282 33693282 C T IP6K3 Missense_Mutation p.R234H 0.11 deleterious(0.01) probably_damaging(0.993) TCGA-O1-A52J-01 6 36075338 36075338 T C MAPK14 Silent p.D316D 0.49 TCGA-O1-A52J-01 6 42231086 42231086 G A TRERF1 Missense_Mutation p.S619L 0.05 tolerated(0.07) benign(0.32) TCGA-O1-A52J-01 6 49403168 49403168 C T MUT Splice_Site p.X708_splice 0.18 TCGA-O1-A52J-01 6 71003982 71003982 A T COL9A1 Missense_Mutation p.F195Y 0.30 unknown(0) TCGA-O1-A52J-01 7 127251160 127251160 G A PAX4 Silent p.A330A 0.42 TCGA-O1-A52J-01 7 128845077 128845077 G C SMO Missense_Mutation p.G191R 0.10 deleterious(0) possibly_damaging(0.883) TCGA-O1-A52J-01 7 129096342 129096342 C T STRIP2 Silent p.G299G 0.13 TCGA-O1-A52J-01 7 130020330 130020330 A T CPA1 5'UTR 0.39 TCGA-O1-A52J-01 7 14880861 14880861 G T DGKB Missense_Mutation p.L10I 0.57 tolerated(0.15) probably_damaging(0.911) TCGA-O1-A52J-01 7 21469830 21469830 C T SP4 Silent p.S349S 0.32 TCGA-O1-A52J-01 7 37934117 37934117 G T NME8 Silent p.V483V 0.23 TCGA-O1-A52J-01 7 4011187 4011187 C T SDK1 Missense_Mutation p.R602W 0.44 deleterious(0) probably_damaging(0.993) TCGA-O1-A52J-01 7 42064965 42064965 C T GLI3 Silent p.T418T 0.26 TCGA-O1-A52J-01 7 4259890 4259890 G T SDK1 Missense_Mutation p.G1897W 0.31 deleterious(0) probably_damaging(0.999) TCGA-O1-A52J-01 7 43484591 43484591 C A HECW1 Missense_Mutation p.A607D 0.20 deleterious_low_confidence(0.03) benign(0.172) TCGA-O1-A52J-01 7 43917743 43917743 C A URGCP Missense_Mutation p.R440L 0.31 deleterious(0.04) possibly_damaging(0.893) TCGA-O1-A52J-01 7 48311826 48311826 A T ABCA13 Missense_Mutation p.T855S 0.25 benign(0.173) TCGA-O1-A52J-01 7 82544166 82544166 C A PCLO Missense_Mutation p.G4379V 0.28 unknown(0) TCGA-O1-A52J-01 7 96651428 96651428 G T DLX5 Intron 0.35 TCGA-O1-A52J-01 8 14412310 14412310 C A SGCZ Silent p.L55L 0.37 TCGA-O1-A52J-01 8 20028934 20028934 G T SLC18A1 Missense_Mutation p.L266M 0.29 deleterious(0.02) probably_damaging(1) TCGA-O1-A52J-01 8 72971627 72971627 C A TRPA1 Missense_Mutation p.V331L 0.46 tolerated(0.31) benign(0.1) TCGA-O1-A52J-01 8 77616814 77616814 C T ZFHX4 Missense_Mutation p.A164V 0.47 possibly_damaging(0.695) TCGA-O1-A52J-01 8 80553719 80553719 A G STMN2 Silent p.P74P 0.57 TCGA-O1-A52J-01 8 88885853 88885853 G T DCAF4L2 Missense_Mutation p.P116Q 0.44 deleterious(0.01) benign(0.094) TCGA-O1-A52J-01 9 104357009 104357009 G T PPP3R2 Missense_Mutation p.D68E 0.56 tolerated(0.05) benign(0.035) TCGA-O1-A52J-01 9 138714221 138714221 G A CAMSAP1 Silent p.S762S 0.28 TCGA-O1-A52J-01 9 19786327 19786327 T C SLC24A2 Missense_Mutation p.M180V 0.43 deleterious(0) probably_damaging(0.999) TCGA-O1-A52J-01 9 70918972 70918972 C - FOXD4L3 Frame_Shift_Del p.L370Ffs*58 0.25 TCGA-O1-A52J-01 X 10058826 10058826 G T WWC3 Missense_Mutation p.M131I 0.33 deleterious(0.02) benign(0.085) TCGA-O1-A52J-01 X 107823921 107823921 G C COL4A5 Missense_Mutation p.G282R 0.09 unknown(0) TCGA-O1-A52J-01 X 11130219 11130219 G T HCCS Missense_Mutation p.Q13H 0.37 tolerated_low_confidence(0.13) possibly_damaging(0.522) TCGA-O1-A52J-01 X 134425457 134425457 C A ZNF75D Nonsense_Mutation p.E213* 0.31 TCGA-O1-A52J-01 X 134987408 134987408 C T SAGE1 Intron 0.48 TCGA-O1-A52J-01 X 135431298 135431298 C A GPR112 Silent p.A1811A 0.33 TCGA-O1-A52J-01 X 138612974 138612974 C A F9 Silent p.I17I 0.41 TCGA-O1-A52J-01 X 140984732 140984732 C A MAGEC3 Silent p.P396P 0.41 TCGA-O1-A52J-01 X 147924492 147924492 A T AFF2 Missense_Mutation p.E392D 0.38 tolerated(1) benign(0.192) TCGA-O1-A52J-01 X 151424354 151424354 C T GABRA3 Silent p.P149P 0.12 TCGA-O1-A52J-01 X 151870060 151870060 C G MAGEA6 Missense_Mutation p.F250L 0.11 tolerated(1) benign(0.001) TCGA-O1-A52J-01 X 17771589 17771589 G T SCML1 3'UTR 0.27 TCGA-O1-A52J-01 X 21875304 21875307 GCTG CCT YY2 Frame_Shift_Del p.Q234Hfs*8 0.09 TCGA-O1-A52J-01 X 24549852 24549852 G A PDK3 Missense_Mutation p.E348K 0.30 deleterious(0) probably_damaging(0.996) TCGA-O1-A52J-01 X 26212384 26212384 G T MAGEB6 Missense_Mutation p.D141Y 0.37 tolerated(0.1) benign(0.446) TCGA-O1-A52J-01 X 31187672 31187672 G T DMD Missense_Mutation p.Q3481K 0.32 benign(0.092) TCGA-O1-A52J-01 X 3228416 3228416 C A MXRA5 Missense_Mutation p.D2610Y 0.34 deleterious(0) probably_damaging(0.998) TCGA-O1-A52J-01 X 38146137 38146137 C A RPGR Missense_Mutation p.R705S 0.34 unknown(0) TCGA-O1-A52J-01 X 40489998 40489998 C A CXorf38 Nonsense_Mutation p.E277* 0.37 TCGA-O1-A52J-01 X 62893976 62893976 C A ARHGEF9 Missense_Mutation p.R289L 0.34 deleterious(0) probably_damaging(0.996) TCGA-O1-A52J-01 X 62898343 62898343 C A ARHGEF9 Missense_Mutation p.C224F 0.61 deleterious(0) probably_damaging(1) TCGA-O1-A52J-01 X 63557224 63557224 C A MTMR8 Missense_Mutation p.W342L 0.23 deleterious(0) probably_damaging(1) TCGA-O1-A52J-01 X 65420513 65420513 C T HEPH Nonsense_Mutation p.Q720* 0.22 TCGA-O1-A52J-01 X 66766100 66766100 T A AR Missense_Mutation p.L371Q 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-O1-A52J-01 X 68059870 68059870 C A EFNB1 Silent p.V189V 0.29 TCGA-O1-A52J-01 X 70781668 70781668 G T OGT Missense_Mutation p.G632V 0.24 deleterious(0) probably_damaging(0.999) TCGA-S2-AA1A-01 10 108432633 108432633 T A SORCS1 Missense_Mutation p.H684L 0.26 tolerated(0.38) benign(0.03) TCGA-S2-AA1A-01 11 1003792 1003792 C T AP2A2 Missense_Mutation p.R732W 0.36 deleterious(0) probably_damaging(0.979) TCGA-S2-AA1A-01 11 113853875 113853875 C A HTR3A Nonsense_Mutation p.Y142* 0.29 TCGA-S2-AA1A-01 11 18745714 18745714 G T IGSF22 Missense_Mutation p.H24N 0.10 deleterious_low_confidence(0.04) benign(0.016) TCGA-S2-AA1A-01 11 45672014 45672014 G T CHST1 Missense_Mutation p.R154S 0.12 deleterious(0.02) probably_damaging(0.952) TCGA-S2-AA1A-01 11 4976200 4976200 T G OR51A2 Silent p.A248A 0.24 TCGA-S2-AA1A-01 11 55032659 55032659 G T TRIM48 Missense_Mutation p.G110C 0.25 deleterious(0.02) probably_damaging(0.973) TCGA-S2-AA1A-01 11 55032660 55032660 G T TRIM48 Missense_Mutation p.G110V 0.25 tolerated(0.3) benign(0.155) TCGA-S2-AA1A-01 11 56058144 56058144 G T OR8H1 Missense_Mutation p.P132Q 0.24 tolerated(0.07) benign(0.008) TCGA-S2-AA1A-01 11 56143752 56143752 A G OR8U1 Missense_Mutation p.Y218C 0.11 deleterious(0) probably_damaging(1) TCGA-S2-AA1A-01 11 56950057 56950057 G T LRRC55 Silent p.G230G 0.21 TCGA-S2-AA1A-01 11 71946167 71946167 C G INPPL1 Missense_Mutation p.P808R 0.20 deleterious(0.01) benign(0.086) TCGA-S2-AA1A-01 12 104326685 104326685 C A HSP90B1 Missense_Mutation p.L126I 0.12 deleterious(0) possibly_damaging(0.822) TCGA-S2-AA1A-01 12 110226313 110226313 C A TRPV4 Silent p.V700V 0.19 TCGA-S2-AA1A-01 12 13719974 13719974 G T GRIN2B Silent p.V861V 0.10 TCGA-S2-AA1A-01 12 33579351 33579351 C A SYT10 Missense_Mutation p.W77C 0.30 deleterious(0) probably_damaging(0.998) TCGA-S2-AA1A-01 12 52913574 52913574 G A KRT5 Silent p.R169R 0.16 TCGA-S2-AA1A-01 12 7293958 7293958 C A CLSTN3 Missense_Mutation p.P482T 0.11 tolerated(0.35) benign(0.023) TCGA-S2-AA1A-01 12 88586432 88586432 T A TMTC3 Nonsense_Mutation p.Y586* 0.12 TCGA-S2-AA1A-01 12 88586434 88586434 T A TMTC3 Missense_Mutation p.L587H 0.12 tolerated(0.15) benign(0.333) TCGA-S2-AA1A-01 14 20483113 20483113 G T OR4K14 Silent p.P80P 0.29 TCGA-S2-AA1A-01 14 20483114 20483114 G T OR4K14 Missense_Mutation p.P80H 0.30 deleterious(0) probably_damaging(1) TCGA-S2-AA1A-01 14 39645753 39645753 G A PNN Missense_Mutation p.G70R 0.50 deleterious(0.02) possibly_damaging(0.752) TCGA-S2-AA1A-01 15 99892596 99892596 A G LRRC28 Silent p.L205L 0.15 TCGA-S2-AA1A-01 16 3254847 3254847 A T OR1F1 Missense_Mutation p.S201C 0.14 deleterious(0.01) possibly_damaging(0.637) TCGA-S2-AA1A-01 16 68712528 68712528 C T CDH3 Missense_Mutation p.P172L 0.29 deleterious(0.01) probably_damaging(1) TCGA-S2-AA1A-01 16 72828170 72828170 G C ZFHX3 Missense_Mutation p.S2804C 0.19 unknown(0) TCGA-S2-AA1A-01 17 11554413 11554413 T C DNAH9 Missense_Mutation p.Y709H 0.11 probably_damaging(0.994) TCGA-S2-AA1A-01 17 18638402 18638402 G T TRIM16L Missense_Mutation p.V226F 0.14 deleterious(0.02) benign(0.119) TCGA-S2-AA1A-01 17 39280089 39280089 A C KRTAP4-12 Missense_Mutation p.C96G 0.13 deleterious(0.05) unknown(0) TCGA-S2-AA1A-01 17 44061117 44061117 C T MAPT Missense_Mutation p.A316V 0.19 tolerated(0.23) benign(0.004) TCGA-S2-AA1A-01 17 55027464 55027464 C A COIL Missense_Mutation p.G380V 0.12 tolerated(0.12) benign(0.076) TCGA-S2-AA1A-01 17 57287967 57287967 A G SMG8 Silent p.A185A 0.20 TCGA-S2-AA1A-01 17 65628352 65628352 G C PITPNC1 Missense_Mutation p.E154Q 0.13 deleterious(0) probably_damaging(0.995) TCGA-S2-AA1A-01 17 67297308 67297308 C T ABCA5 Silent p.L413L 0.14 TCGA-S2-AA1A-01 17 72588850 72588850 C T C17orf77 Missense_Mutation p.A222V 0.18 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-S2-AA1A-01 17 73106586 73106586 C - ARMC7 Frame_Shift_Del p.A41Pfs*85 0.09 TCGA-S2-AA1A-01 18 29055963 29055963 G A DSG3 Missense_Mutation p.G914R 0.11 deleterious(0.04) benign(0.303) TCGA-S2-AA1A-01 18 42531861 42531861 G T SETBP1 Silent p.T852T 0.11 TCGA-S2-AA1A-01 18 64172365 64172365 C G CDH19 Missense_Mutation p.R668P 0.32 tolerated(0.28) benign(0.018) TCGA-S2-AA1A-01 19 22941115 22941115 A T ZNF99 Silent p.T532T 0.17 TCGA-S2-AA1A-01 19 39521919 39521919 A T FBXO27 Missense_Mutation p.W136R 0.15 tolerated(0.1) probably_damaging(1) TCGA-S2-AA1A-01 19 39521920 39521920 G T FBXO27 Silent p.G135G 0.13 TCGA-S2-AA1A-01 19 4171170 4171170 G A CREB3L3 Missense_Mutation p.A325T 0.11 tolerated(0.1) probably_damaging(0.974) TCGA-S2-AA1A-01 19 43441268 43441268 C A PSG7 5'UTR 0.16 TCGA-S2-AA1A-01 19 44832399 44832399 C A ZNF112 Silent p.G643G 0.13 TCGA-S2-AA1A-01 19 49129371 49129371 G A SPHK2 Missense_Mutation p.R88Q 0.21 deleterious(0.02) possibly_damaging(0.775) TCGA-S2-AA1A-01 19 51358218 51358218 G A KLK3 Missense_Mutation p.V3I 0.17 tolerated(0.06) benign(0.041) TCGA-S2-AA1A-01 19 53770610 53770610 G T VN1R4 Silent p.V103V 0.22 TCGA-S2-AA1A-01 19 54872787 54872787 C A LAIR1 Nonsense_Mutation p.E34* 0.25 TCGA-S2-AA1A-01 19 54932468 54932468 G C TTYH1 Missense_Mutation p.G108A 0.11 deleterious(0) probably_damaging(1) TCGA-S2-AA1A-01 19 8999423 8999423 G T MUC16 Nonsense_Mutation p.Y13584* 0.09 TCGA-S2-AA1A-01 19 9089904 9089904 G A MUC16 Silent p.S637S 0.12 TCGA-S2-AA1A-01 19 9089905 9089905 G T MUC16 Missense_Mutation p.S637Y 0.12 unknown(0) TCGA-S2-AA1A-01 1 100750788 100750788 A T RTCA Silent p.V281V 0.13 TCGA-S2-AA1A-01 1 10364310 10364310 C T KIF1B Intron 0.19 TCGA-S2-AA1A-01 1 109839520 109839520 G A MYBPHL Silent p.I205I 0.20 TCGA-S2-AA1A-01 1 156521850 156521850 C A IQGAP3 Missense_Mutation p.G496W 0.13 deleterious(0.01) possibly_damaging(0.682) TCGA-S2-AA1A-01 1 156639416 156639416 C T NES Missense_Mutation p.G1522R 0.09 tolerated(0.4) benign(0.03) TCGA-S2-AA1A-01 1 161642828 161642828 G A FCGR2B Missense_Mutation p.C152Y 0.20 deleterious(0) probably_damaging(1) TCGA-S2-AA1A-01 1 175372505 175372505 C A TNR Missense_Mutation p.E249D 0.17 deleterious(0.02) benign(0.002) TCGA-S2-AA1A-01 1 183519012 183519012 C T SMG7 Silent p.S983S 0.06 TCGA-S2-AA1A-01 1 186302375 186302375 G A TPR Silent p.P1778P 0.26 TCGA-S2-AA1A-01 1 197026199 197026199 C G F13B Missense_Mutation p.G372A 0.12 deleterious(0.02) probably_damaging(0.928) TCGA-S2-AA1A-01 1 202710653 202710653 G A KDM5B Silent p.D929D 0.22 TCGA-S2-AA1A-01 1 204006300 204006300 G T LINC00303 Intron 0.21 TCGA-S2-AA1A-01 1 248129378 248129378 C A OR2AK2 Missense_Mutation p.Q249K 0.10 tolerated(0.19) possibly_damaging(0.803) TCGA-S2-AA1A-01 1 36068944 36068944 G A PSMB2 Missense_Mutation p.T177I 0.15 tolerated(0.08) benign(0.03) TCGA-S2-AA1A-01 1 38082186 38082186 C A RSPO1 Missense_Mutation p.A86S 0.17 tolerated(0.07) benign(0.155) TCGA-S2-AA1A-01 1 44458225 44458225 C T CCDC24 Silent p.S111S 0.09 TCGA-S2-AA1A-01 1 44463569 44463569 G T SLC6A9 Silent p.A628A 0.16 TCGA-S2-AA1A-01 1 53927174 53927174 T C DMRTB1 Silent p.R202R 0.11 TCGA-S2-AA1A-01 1 68943509 68943509 C A DEPDC1 Missense_Mutation p.R753S 0.20 deleterious(0) benign(0.044) TCGA-S2-AA1A-01 20 33872368 33872368 C G EIF6 Intron 0.13 TCGA-S2-AA1A-01 20 45853002 45853002 C A ZMYND8 Missense_Mutation p.W1029L 0.24 deleterious(0) probably_damaging(0.999) TCGA-S2-AA1A-01 20 50048610 50048610 C G NFATC2 Missense_Mutation p.D906H 0.28 deleterious(0) probably_damaging(0.999) TCGA-S2-AA1A-01 20 50048611 50048611 C A NFATC2 Missense_Mutation p.L905F 0.27 deleterious(0) probably_damaging(0.999) TCGA-S2-AA1A-01 20 5556573 5556573 C A GPCPD1 Missense_Mutation p.G253C 0.07 deleterious(0) probably_damaging(0.996) TCGA-S2-AA1A-01 21 16338899 16338899 C T NRIP1 Missense_Mutation p.V539M 0.29 deleterious(0.02) probably_damaging(0.981) TCGA-S2-AA1A-01 21 35260488 35260488 G T ITSN1 Missense_Mutation p.D1684Y 0.27 deleterious(0.01) probably_damaging(0.921) TCGA-S2-AA1A-01 21 39086652 39086652 G T KCNJ6 Missense_Mutation p.R270S 0.29 deleterious(0.02) probably_damaging(1) TCGA-S2-AA1A-01 22 25627696 25627696 A T CRYBB2 Missense_Mutation p.D192V 0.19 deleterious(0) probably_damaging(1) TCGA-S2-AA1A-01 22 31859798 31859798 C A EIF4ENIF1 Nonsense_Mutation p.G152* 0.15 TCGA-S2-AA1A-01 2 10059900 10059900 C A TAF1B Missense_Mutation p.L506M 0.08 tolerated(0.22) benign(0.02) TCGA-S2-AA1A-01 2 11053925 11053925 G T KCNF1 Missense_Mutation p.G458V 0.21 deleterious(0) benign(0.059) TCGA-S2-AA1A-01 2 114476731 114476731 C T SLC35F5 Missense_Mutation p.R499K 0.17 tolerated(0.16) possibly_damaging(0.751) TCGA-S2-AA1A-01 2 234345078 234345078 C T DGKD Silent p.C270C 0.11 TCGA-S2-AA1A-01 2 32740270 32740270 T C BIRC6 Silent p.D3594D 0.15 TCGA-S2-AA1A-01 2 33335717 33335717 C A LTBP1 Missense_Mutation p.P311H 0.17 deleterious(0) possibly_damaging(0.897) TCGA-S2-AA1A-01 2 49190008 49190008 G T FSHR Missense_Mutation p.A651D 0.16 deleterious(0) probably_damaging(0.994) TCGA-S2-AA1A-01 3 120417286 120417286 G A RABL3 Missense_Mutation p.P173L 0.29 deleterious(0) benign(0.011) TCGA-S2-AA1A-01 3 146309646 146309646 C A PLSCR5 Missense_Mutation p.G159V 0.33 deleterious(0) probably_damaging(1) TCGA-S2-AA1A-01 3 147130397 147130397 G T ZIC1 Missense_Mutation p.D359Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-S2-AA1A-01 3 148563320 148563320 C A CPB1 Silent p.S296S 0.14 TCGA-S2-AA1A-01 3 16269012 16269012 C T GALNT15 3'UTR 0.20 TCGA-S2-AA1A-01 3 3221344 3221344 C G CRBN Missense_Mutation p.A10P 0.24 tolerated_low_confidence(0.29) benign(0.001) TCGA-S2-AA1A-01 3 56468427 56468427 C A ERC2 Silent p.R203R 0.20 TCGA-S2-AA1A-01 3 88040836 88040836 G T HTR1F Nonsense_Mutation p.E313* 0.10 TCGA-S2-AA1A-01 3 89445049 89445049 T A EPHA3 Missense_Mutation p.W457R 0.18 deleterious(0) probably_damaging(0.999) TCGA-S2-AA1A-01 4 123333964 123333964 G T ADAD1 Missense_Mutation p.G417C 0.14 deleterious(0) probably_damaging(1) TCGA-S2-AA1A-01 4 155019 155019 G T ZNF718 RNA 0.15 TCGA-S2-AA1A-01 4 16002154 16002154 T A PROM1 Missense_Mutation p.I515F 0.15 tolerated(0.06) benign(0.135) TCGA-S2-AA1A-01 4 3319283 3319283 G T RGS12 Silent p.G462G 0.18 TCGA-S2-AA1A-01 4 4304774 4304774 T G ZBTB49 Missense_Mutation p.F404C 0.14 deleterious(0) probably_damaging(1) TCGA-S2-AA1A-01 4 69093769 69093769 C A TMPRSS11B Missense_Mutation p.A371S 0.18 deleterious(0) benign(0.26) TCGA-S2-AA1A-01 4 71255619 71255619 A T SMR3B 3'UTR 0.08 TCGA-S2-AA1A-01 5 127670926 127670926 A T FBN2 Silent p.P1303P 0.15 TCGA-S2-AA1A-01 5 140564337 140564337 C T PCDHB16 Missense_Mutation p.R735C 0.16 deleterious_low_confidence(0) benign(0) TCGA-S2-AA1A-01 5 140682468 140682468 C A SLC25A2 3'UTR 0.29 TCGA-S2-AA1A-01 5 23509195 23509195 C A PRDM9 Missense_Mutation p.T18K 0.24 tolerated_low_confidence(0.32) unknown(0) TCGA-S2-AA1A-01 5 26903817 26903817 C A CDH9 Nonsense_Mutation p.G310* 0.29 TCGA-S2-AA1A-01 5 32780863 32780866 GACC - NPR3 Frame_Shift_Del p.R412Mfs*6 0.19 TCGA-S2-AA1A-01 5 74077753 74077753 G T FAM169A Silent p.S515S 0.19 TCGA-S2-AA1A-01 6 133049948 133049948 C A VNN3 Missense_Mutation p.G157C 0.20 deleterious(0) probably_damaging(0.999) TCGA-S2-AA1A-01 6 146673431 146673431 G A GRM1 Missense_Mutation p.G411E 0.19 tolerated(0.05) probably_damaging(0.919) TCGA-S2-AA1A-01 6 153332766 153332766 G T RGS17 Missense_Mutation p.N192K 0.17 tolerated(0.11) benign(0.275) TCGA-S2-AA1A-01 6 157744511 157744511 T A TMEM242 Silent p.A7A 0.19 TCGA-S2-AA1A-01 6 165715140 165715140 T A C6orf118 Missense_Mutation p.E224V 0.13 deleterious(0.01) possibly_damaging(0.735) TCGA-S2-AA1A-01 6 39835431 39835431 G T DAAM2 Missense_Mutation p.A192S 0.06 tolerated(0.2) probably_damaging(0.996) TCGA-S2-AA1A-01 6 99848702 99848702 A T PNISR Nonsense_Mutation p.L711* 0.17 TCGA-S2-AA1A-01 7 130002828 130002828 A G CPA5 Missense_Mutation p.H247R 0.18 deleterious(0.03) probably_damaging(0.968) TCGA-S2-AA1A-01 7 140302209 140302209 G T DENND2A 5'UTR 0.26 TCGA-S2-AA1A-01 7 144320333 144320333 G A TPK1 Missense_Mutation p.P94S 0.21 deleterious(0.05) benign(0.276) TCGA-S2-AA1A-01 7 17861301 17861301 T C SNX13 Intron 0.15 TCGA-S2-AA1A-01 7 37889861 37889861 G T NME8 Splice_Site 0.22 TCGA-S2-AA1A-01 7 70255423 70255423 C T AUTS2 Missense_Mutation p.P1074L 0.41 deleterious(0.05) probably_damaging(0.999) TCGA-S2-AA1A-01 8 121457330 121457330 G T MRPL13 Nonsense_Mutation p.S2* 0.12 TCGA-S2-AA1A-01 8 72967921 72967921 C A TRPA1 Missense_Mutation p.S455I 0.14 deleterious(0.03) probably_damaging(0.914) TCGA-S2-AA1A-01 8 77617666 77617666 C A ZFHX4 Missense_Mutation p.P448Q 0.23 possibly_damaging(0.904) TCGA-S2-AA1A-01 9 102607105 102607105 C A NR4A3 Missense_Mutation p.L488M 0.22 deleterious(0.02) possibly_damaging(0.62) TCGA-S2-AA1A-01 9 104449357 104449357 G T GRIN3A Missense_Mutation p.N275K 0.10 tolerated(0.15) possibly_damaging(0.606) TCGA-S2-AA1A-01 9 117819616 117819616 G T TNC Missense_Mutation p.F1465L 0.19 deleterious(0.02) probably_damaging(0.997) TCGA-S2-AA1A-01 9 131475832 131475832 G T PKN3 Missense_Mutation p.V383L 0.18 tolerated(0.36) benign(0.041) TCGA-S2-AA1A-01 9 136259429 136259429 A G C9orf96 Missense_Mutation p.K199E 0.13 deleterious(0) possibly_damaging(0.673) TCGA-S2-AA1A-01 X 100103626 100103626 G T NOX1 Missense_Mutation p.H521N 0.12 tolerated(0.13) benign(0.044) TCGA-S2-AA1A-01 X 100668237 100668237 G A HNRNPH2 Missense_Mutation p.G421R 0.04 deleterious(0.03) probably_damaging(0.998) TCGA-S2-AA1A-01 X 101970472 101970472 G T GPRASP2 Missense_Mutation p.W225C 0.11 deleterious(0) probably_damaging(0.986) TCGA-S2-AA1A-01 X 108673535 108673535 C A GUCY2F Splice_Site p.X597_splice 0.09 TCGA-S2-AA1A-01 X 134709092 134709092 G A DDX26B Missense_Mutation p.D572N 0.08 tolerated(0.11) probably_damaging(0.971) TCGA-S2-AA1A-01 X 135861647 135861647 C A ARHGEF6 Missense_Mutation p.D59Y 0.14 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-S2-AA1A-01 X 142605181 142605181 C T SPANXN3 Silent p.T13T 0.10 TCGA-S2-AA1A-01 X 153691778 153691778 C A PLXNA3 Silent p.V454V 0.11 TCGA-S2-AA1A-01 X 15560290 15560290 T A BMX Nonsense_Mutation p.L527* 0.17 TCGA-S2-AA1A-01 X 16142113 16142113 G T GRPR Missense_Mutation p.V13L 0.08 tolerated_low_confidence(0.33) benign(0) TCGA-S2-AA1A-01 X 27839491 27839491 A T MAGEB10 Missense_Mutation p.E23V 0.12 deleterious(0.01) benign(0.082) TCGA-S2-AA1A-01 X 41646450 41646450 G T CASK Missense_Mutation p.L87I 0.07 tolerated(0.1) benign(0.134)